Sequence	Length	Modifications	Modified sequence	Carbamidomethyl (C) Probabilities	Oxidation (M) Probabilities	Carbamidomethyl (C) Score Diffs	Oxidation (M) Score Diffs	Acetyl (Protein N-term)	Carbamidomethyl (C)	Oxidation (M)	Missed cleavages	Proteins	Leading proteins	Leading razor protein	Type	Raw file	Experiment	MS/MS m/z	Charge	m/z	Mass	Uncalibrated - Calibrated m/z [ppm]	Uncalibrated - Calibrated m/z [Da]	Mass error [ppm]	Mass error [Da]	Uncalibrated mass error [ppm]	Uncalibrated mass error [Da]	Max intensity m/z 0	Retention time	Retention length	Calibrated retention time	Calibrated retention time start	Calibrated retention time finish	Retention time calibration	Match time difference	Match m/z difference	Match q-value	Match score	Number of data points	Number of scans	Number of isotopic peaks	PIF	Fraction of total spectrum	Base peak fraction	PEP	MS/MS count	MS/MS scan number	MS/MS scan numbers	MS3 scan numbers	Score	Delta score	Combinatorics	Intensity	Reverse	Potential contaminant	id	Protein group IDs	Peptide ID	Mod. peptide ID	MS/MS IDs	Best MS/MS	Carbamidomethyl (C) site IDs	Oxidation (M) site IDs	Taxonomy IDs	Taxonomy names	Mass deficit
AAAAGVAGVI	10	Unmodified	_AAAAGVAGVI_					0	0	0			REV__ENST00000551766.5_1_16:22448505-22448907:-|nuORF	REV__ENST00000551766.5_1_16:22448505-22448907:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	400.238037109375	2	400.237253	798.459953	0.93434	0.00037396	1.8401	0.00073649	2.7745	0.0011104	400.2379920943081	43.376	0.72269	43.376	43.143	43.866	0					21	16	2	0	0	0	0.5794	1	2858	2858		44.531	0	1	557970	+		0	27488	0	0	0	0					0.052661306972822786
AAAFDFPTSF	10	Unmodified	_AAAFDFPTSF_					0	0	0		ENST00000497242.1_1_X:153631168-153631932:-|nuORF;ENSG00000013563|ENST00000369807|DNASE1L1	ENST00000497242.1_1_X:153631168-153631932:-|nuORF	ENST00000497242.1_1_X:153631168-153631932:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.2723388671875	2	537.250557	1072.48656	2.4417	0.0013118	-2.1205	-0.0011393	0.32115	0.00017254	537.2483814797745	89.103	0.55367	89.103	88.76	89.313	0					21	13	2	0	0	0	0.026802	1	9503	9503		42.396	13.247	1	577960			1	990	1	1	1	1					-0.046782252020420856
AAAFLPGIFL	10	Unmodified	_AAAFLPGIFL_					0	0	0		ENST00000527483.5_1_10:127395733-127396128:-|nuORF	ENST00000527483.5_1_10:127395733-127396128:-|nuORF	ENST00000527483.5_1_10:127395733-127396128:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	510.2990417480469	2	510.299853	1018.58515	2.6738	0.0013644	-4.3576	-0.0022237	-1.6838	-0.00085924	510.2974503076215	107.65	0.46211	107.65	107.4	107.86	0					21	10	3	0	0	0	0.5794	1	12164	12164		44.531	2.0566	1	565230			2	13237	2	2	2	2					0.07660422833657776
AAALGRKIDS	10	Unmodified	_AAALGRKIDS_					0	0	0		tr|A0A553SRF6|A0A553SRF6_NIACIGlycosidehydrolasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_00975PE=3SV=1	tr|A0A553SRF6|A0A553SRF6_NIACIGlycosidehydrolasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_00975PE=3SV=1	tr|A0A553SRF6|A0A553SRF6_NIACIGlycosidehydrolasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_00975PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2893371582031	2	501.290548	1000.56654	-1.4695	-0.00073667	1.3149	0.00065914	-0.15466	-7.7529E-05	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.69073	1	11253	11253		31.53	5.9558	1	97838			3	34259	3	3	3	3					0.06628261191792717
AAAPLGARVTG	11	Unmodified	_AAAPLGARVTG_					0	0	0			REV__ENST00000345057.8_1_16:67188417-67189138:-|nuORF	REV__ENST00000345057.8_1_16:67188417-67189138:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	492.2842712402344	2	492.285266	982.555979	-2.3423	-0.0011531	2.5437	0.0012522	0.2014	9.9145E-05	492.28641322443195	149.16	1.1047	148.94	148.52	149.62	-0.22696					49	21	3	0	0	0	0.71191	1	15095	15095		25.574	2.5316	1	83456	+		4	24688	4	4	4	4					0.06400278537364557
AAAPRPGHMQ	10	Unmodified	_AAAPRPGHMQ_					0	0	0		ENST00000407558.8_1_16:3536054-3536108:+|nuORF	ENST00000407558.8_1_16:3536054-3536108:+|nuORF	ENST00000407558.8_1_16:3536054-3536108:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	518.2625122070312	2	518.261268	1034.50798	1.0128	0.00052487	1.5506	0.00080362	2.5634	0.0013285	518.2618451712167	129.49	1.6325	128.38	127.94	129.57	-1.1121					68	32	4	0	0	0	0.7759	1	10272	10272		21.96	0	1	413920			5	11499	5	5	5	5					-0.007891186543020012
AAARARLH	8	Unmodified	_AAARARLH_					0	0	0		nc|ENSG00000136811|Q5BJF6-7|ODF2;ENSG00000136811|ENST00000351030|ODF2	nc|ENSG00000136811|Q5BJF6-7|ODF2	nc|ENSG00000136811|Q5BJF6-7|ODF2	MULTI-MSMS	OvCa9_classI_Rep2	2	433.25537109375	2	433.259385	864.504218	-4.9467	-0.0021432	-2.6989	-0.0011693	-7.6456	-0.0033125	433.25842702722366	162.77	0.23622	162.54	162.4	162.64	-0.22696					17	4	5	0	0	0	0.69415	1	16595	16595		44.531	16.277	1	407620			6	4516	6	6	6	6					0.06654579634130187
AAARARLH	8	Unmodified	_AAARARLH_					0	0	0		nc|ENSG00000136811|Q5BJF6-7|ODF2;ENSG00000136811|ENST00000351030|ODF2	nc|ENSG00000136811|Q5BJF6-7|ODF2	nc|ENSG00000136811|Q5BJF6-7|ODF2	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	433.259385	864.504218	-5.7476	-0.0024902	-4.1265	-0.0017878	-9.8741	-0.004278	433.25778720504144	164.1	0.24614	162.46	162.36	162.61	-1.6336	-0.067797	-0.0010429	NaN	44.531	19	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	709030			7	4516	6	6							0.06654579634130187
AAAYPHTSL	9	Unmodified	_AAAYPHTSL_					0	0	0		nc|ENSG00000142599|Q9P2R6-2|RERE;ENSG00000142599|ENST00000400908|RERE	nc|ENSG00000142599|Q9P2R6-2|RERE	nc|ENSG00000142599|Q9P2R6-2|RERE	MULTI-MSMS	OvCa99_classI_Rep5	1	465.7392578125	2	465.737617	929.460681	-0.041237	-1.9205E-05	0.53782	0.00025048	0.49659	0.00023128	465.7374679093358	60.577	0.74625	60.577	60.238	60.984	0					45	17	4	0	0	0	0.27546	1	5281	5281		65.803	9.0821	1	2427200			8	4981	7	7	7	7					-0.006870746536719707
AAAYPHTSL	9	Unmodified	_AAAYPHTSL_					0	0	0		nc|ENSG00000142599|Q9P2R6-2|RERE;ENSG00000142599|ENST00000400908|RERE	nc|ENSG00000142599|Q9P2R6-2|RERE	nc|ENSG00000142599|Q9P2R6-2|RERE	MULTI-MATCH	OvCa9_classI_Rep2	2		2	465.737617	929.460681	-1.9441	-0.00090543	1.526	0.00071073	-0.41806	-0.00019471	465.73811716636396	63.102	0.37218	60.357	60.161	60.533	-2.7444	-0.11008	0.00082158	NaN	65.803	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6498.5			9	4981	7	7							-0.006870746536719707
AADAESTSHG	10	Unmodified	_AADAESTSHG_					0	0	0			REV__ENST00000369799.9_1_1:110527397-110527685:+|nuORF	REV__ENST00000369799.9_1_1:110527397-110527685:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.7796936035156	2	473.199053	944.383553	-1.0271	-0.00048601	2.5369	0.0012005	1.5099	0.00071446	473.2000217736427	34.563	0.37425	34.563	34.304	34.679	0					9	7	2	0	0	0	0.026665	1	1679	1679		42.396	6.7778	1	35089	+		10	24948	8	8	8	8					-0.09086337660653498
AADALLRGLL	10	Unmodified	_AADALLRGLL_					0	0	0		ENSG00000187550|ENST00000413299|SBK2	ENSG00000187550|ENST00000413299|SBK2	ENSG00000187550|ENST00000413299|SBK2	MULTI-MSMS	OvCa9_classI_Rep2	2	506.808349609375	2	506.811116	1011.60768	-1.1259	-0.00057063	0.32757	0.00016601	-0.79835	-0.00040461	506.81130069607957	99.678	3.3722	98.848	98.219	101.59	-0.83051					157	66	4	0	0	0	0.50999	1	9193	9193		52.937	3.7259	1	2351400			11	8410	9	9	9	9					0.10234022231293238
AADAQLTNKAL	11	Unmodified	_AADAQLTNKAL_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1;REV__MACF1-CMTM4|1|fusion	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OvCa99_classI_Rep5	1	558.3062133789062	2	558.306395	1114.59824	0.58837	0.00032849	-1.0865	-0.00060658	-0.49809	-0.00027809	558.3057781598629	45.18	1.0025	45.18	44.932	45.934	0					55	22	4	0	0	0	0.38665	1	3118	3118		62.107	0	1	5230800	+		12	18823;28637	10	10	10	10					0.045522091550765253
AADKRSKAL	9	Unmodified	_AADKRSKAL_					0	0	0		ENSG00000156411|ENST00000286953|ATP5MJ;nc|ENSG00000156411|P56378-2|ATP5MJ	ENSG00000156411|ENST00000286953|ATP5MJ	ENSG00000156411|ENST00000286953|ATP5MJ	MULTI-MSMS	OvCa99_classI_Rep5	1	480.2850646972656	2	480.285266	958.555979	-0.18492	-8.8813E-05	0.20531	9.8607E-05	0.020391	9.7936E-06	480.28520273144085	23.425	0.45145	23.425	23.297	23.748	0					18	8	3	0	0	0	0.42576	1	330	330		49.536	13.089	1	261530			13	5837	11	11	11	11					0.0750427853738529
AADLMGRDFTI	11	Unmodified	_AADLMGRDFTI_					0	0	0		ENSG00000012171|ENST00000616701|SEMA3B;nc|ENSG00000012171|Q13214-2|SEMA3B	ENSG00000012171|ENST00000616701|SEMA3B	ENSG00000012171|ENST00000616701|SEMA3B	MULTI-SECPEP	OvCa99_classI_Rep5	1	605.8731079101562	2	605.300255	1208.58596	0.62623	0.00037906	-2.5352	-0.0015346	-1.909	-0.0011555	605.8012783992698	161.92	0.76152	161.92	161.72	162.48	0					20	14	2	0	0	0	0.025457	1	19051	19051		36.447	24.936	1	31289			14	972	12	12	12	12					-0.009991505795824196
AAEKEKRL	8	Unmodified	_AAEKEKRL_					0	0	0			REV__ENSG00000134899|ENST00000652225|ERCC5	REV__ENSG00000134899|ENST00000652225|ERCC5	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.7794494628906	2	472.779816	943.545079	0.48973	0.00023154	-1.0888	-0.00051477	-0.59908	-0.00028323	472.77918194813867	39.545	1.4111	36.619	36.196	37.607	-2.9264					62	27	3	0	0	0	0.58851	1	1629	1629		66.429	4.738	1	489150	+		15	19241	13	13	13	13					0.07104876163089102
AAEKEKRL	8	Unmodified	_AAEKEKRL_					0	0	0			REV__ENSG00000134899|ENST00000652225|ERCC5	REV__ENSG00000134899|ENST00000652225|ERCC5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	472.779816	943.545079	-0.82766	-0.0003913	0.77301	0.00036546	-0.054648	-2.5836E-05	472.780028211999	39.342	0.84292	36.632	36.459	37.302	-2.7097	0.0065734	0.0010506	NaN	66.429	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107250	+		16	19241	13	13							0.07104876163089102
AAEKERLK	8	Unmodified	_AAEKERLK_					0	0	0			REV__ENST00000532683.5_1_14:73569902-73577964:+|nuORF	REV__ENST00000532683.5_1_14:73569902-73577964:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	472.7796936035156	2	472.779816	943.545079	-1.0074	-0.00047626	0.28355	0.00013406	-0.72381	-0.0003422	472.77996860969245	34.655	1.4999	34.655	34.161	35.661	0					52	31	2	0	0	0	0.34187	1	1679	1679		99.375	0.79297	1	6003200	+		17	18463	14	14	14	14					0.07104876163100471
AAEKGVRTL	9	Unmodified	_AAEKGVRTL_					0	0	0		PLIN3|p.Q335Lfs*60|1|0.19|ENSG00000105355|chr19:4839495-4839496|-/CTGGAGT|frameshift_variant;nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3	PLIN3|p.Q335Lfs*60|1|0.19|ENSG00000105355|chr19:4839495-4839496|-/CTGGAGT|frameshift_variant	PLIN3|p.Q335Lfs*60|1|0.19|ENSG00000105355|chr19:4839495-4839496|-/CTGGAGT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	472.77960205078125	2	472.779816	943.545079	-1.0074	-0.00047626	0.28355	0.00013406	-0.72381	-0.0003422	472.77996860969245	34.655	1.4999	34.655	34.161	35.661	0					52	31	2	0	0	0	0.13326	1	1702	1702		88.177	36.841	1	6003200			18	2444	15	15	15	15					0.07104876163089102
AAEKLRKE	8	Unmodified	_AAEKLRKE_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.77899169921875	2	472.779816	943.545079	0.48973	0.00023154	-1.0888	-0.00051477	-0.59908	-0.00028323	472.77918194813867	39.545	1.4111	36.619	36.196	37.607	-2.9264					62	27	3	0	0	0	0.65062	1	1641	1641		53.351	0	1	489150			19	7740	16	16	16	16					0.07104876163100471
AAELFSTGGL	10	Unmodified	_AAELFSTGGL_					0	0	0		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-MSMS	OvCa9_classI_Rep3	3	483.25396728515625	2	483.250557	964.486562	1.2831	0.00062006	2.3562	0.0011386	3.6393	0.0017587	483.2516813704444	63.712	0.93725	60.719	60.407	61.344	-2.9933					23	18	2	0	0	0	0.67931	1	2411	2411		32.812	6.1195	1	14408			20	2585	17	17	17	17					0.0028977479797731576
AAFAIATSAFV	11	Unmodified	_AAFAIATSAFV_					0	0	0			REV__tr|A0A553SGR1|A0A553SGR1_NIACITransglutaminaseOS=NialliacirculansOX=1397GN=CEQ21_11305PE=4SV=1	REV__tr|A0A553SGR1|A0A553SGR1_NIACITransglutaminaseOS=NialliacirculansOX=1397GN=CEQ21_11305PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	534.7919921875	2	534.78985	1067.56515	3.0352	0.0016232	0.018347	9.812E-06	3.0536	0.001633	534.7896759823677	56.343	2.6096	53.193	52.451	55.06	-3.1504					179	83	3	0	0	0	0.72244	1	1580	1580		21.96	1.013	1	87189	+		21	29730	18	18	18	18					0.034066271030496864
AAFPPGSSCGQ	11	Unmodified	_AAFPPGSSCGQ_					0	0	0		ENST00000599145.1_1_19:58928113-58929148:+|nuORF;ENSG00000171574|ENST00000306910|ZNF584	ENST00000599145.1_1_19:58928113-58929148:+|nuORF	ENST00000599145.1_1_19:58928113-58929148:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	511.22576904296875	2	511.224017	1020.43348	0.71545	0.00036576	4.3632	0.0022306	5.0787	0.0025964	511.22611807898153	42.761	1.1373	40.052	39.769	40.906	-2.7097					49	22	3	0	0	0	0.69808	1	2335	2335		30.318	1.1682	1	130720			22	14204	19	19	19	19					-0.07591926256350234
AAFYFLPFLL	10	Unmodified	_AAFYFLPFLL_					0	0	0		tr|A0A553SRP9|A0A553SRP9_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_01485PE=4SV=1	tr|A0A553SRP9|A0A553SRP9_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_01485PE=4SV=1	tr|A0A553SRP9|A0A553SRP9_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_01485PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	601.3079223632812	2	601.336436	1200.65832	-1.7046	-0.001025	2.9097	0.0017497	1.2051	0.00072466	601.3381026404177	120.21	0.88791	120.04	119.79	120.68	-0.17137					37	17	3	0	0	0	0.026734	1	11629	11629		26.796	0	1	34830			23	34286	20	20	20	20					0.06601551556263985
AAGGYIFGTF	10	Unmodified	_AAGGYIFGTF_					0	0	0		tr|A0A7D6ZZF1|A0A7D6ZZF1_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05805PE=3SV=1	tr|A0A7D6ZZF1|A0A7D6ZZF1_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05805PE=3SV=1	tr|A0A7D6ZZF1|A0A7D6ZZF1_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05805PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.2276916503906	2	502.247818	1002.48108	-0.23563	-0.00011834	-4.3297	-0.0021746	-4.5653	-0.0022929	502.2454299823529	90.268	1.0685	87.693	87.348	88.417	-2.575					30	20	2	0	0	0	0.026822	1	7785	7785		47.916	28.556	1	40300			24	35959	21	21	21	21					-0.02005903993847369
AAIMLPTQ	8	Unmodified	_AAIMLPTQ_					0	0	0			REV__KIDINS220|p.H1622Qfs*20|1|0.07|ENSG00000134313|chr2:8731170-8731171|-/CACTTTGTTGGCAATTTTTAAAGCCC|frameshift_variant	REV__KIDINS220|p.H1622Qfs*20|1|0.07|ENSG00000134313|chr2:8731170-8731171|-/CACTTTGTTGGCAATTTTTAAAGCCC|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	422.7340393066406	2	422.733489	843.452425	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.09	1	143.09	142.59	143.59	0								0	0	0	0.30129	1	16721	16721		60.294	5.5293	1		+		25	19193	22	22	22	22					0.024436551053554467
AAITIKASLHV	11	Unmodified	_AAITIKASLHV_					0	0	0			REV__ENSG00000132182|ENST00000254508|NUP210	REV__ENSG00000132182|ENST00000254508|NUP210	MULTI-MSMS	OvCa9_classI_Rep2	2	562.343505859375	2	562.345323	1122.67609	-1.142	-0.00064221	-2.621	-0.0014739	-3.7631	-0.0021161	562.3438081477608	141.84	4.7959	141.62	140.24	145.03	-0.22697					133	96	2	0	0	0	0.72479	1	14357	14357		18.262	0.89712	1	113870	+		26	19058	23	23	23	23					0.11966266811100468
AAITSLGILI	10	Unmodified	_AAITSLGILI_					0	0	0			REV__tr|A0A553SP67|A0A553SP67_NIACICalcium-translocatingP-typeATPase,SERCA-typeOS=NialliacirculansOX=1397GN=CEQ21_25800PE=4SV=1	REV__tr|A0A553SP67|A0A553SP67_NIACICalcium-translocatingP-typeATPase,SERCA-typeOS=NialliacirculansOX=1397GN=CEQ21_25800PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	486.3105773925781	2	486.310418	970.606283	0.90838	0.00044175	0.56318	0.00027388	1.4716	0.00071563	486.3106117021353	156.85	1.0537	156.85	156.6	157.65	0					38	20	3	0	0	0	0.50656	1	18369	18369		53.351	2.016	1	125660	+		27	30502	24	24	24	24					0.11980388142512766
AAKLASRAQG	10	Unmodified	_AAKLASRAQG_					0	0	0		ENSG00000118491|ENST00000237275|ZC2HC1B	ENSG00000118491|ENST00000237275|ZC2HC1B	ENSG00000118491|ENST00000237275|ZC2HC1B	MULTI-MSMS	OvCa9_classI_Rep2	2	486.7830505371094	2	486.78289	971.551228	0.43908	0.00021374	-0.52243	-0.00025431	-0.083348	-4.0573E-05	486.7825302648535	31.131	0.98493	28.421	28.248	29.233	-2.7097					37	19	4	0	0	0	0.74374	1	931	931		25.574	1.3713	1	171450			28	3308	25	25	25	25					0.06431394394610379
AALEKEAQTSF	11	Unmodified	_AALEKEAQTSF_					0	0	0		ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-3|DDX1	ENSG00000079785|ENST00000233084|DDX1	ENSG00000079785|ENST00000233084|DDX1	MULTI-MSMS	OvCa99_classI_Rep5	1	597.807861328125	2	597.803685	1193.59282	-0.025081	-1.4993E-05	3.543	0.002118	3.5179	0.002103	597.8063889096685	68.631	0.95347	68.631	68.192	69.145	0					34	22	3	0	0	0	0.34309	1	6494	6494		65.278	10.501	1	2012600			29	1620	26	26	26	26					0.003764855726103633
AALEKEAQTSF	11	Unmodified	_AALEKEAQTSF_					0	0	0		ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-3|DDX1	ENSG00000079785|ENST00000233084|DDX1	ENSG00000079785|ENST00000233084|DDX1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	597.803685	1193.59282	0.078844	4.7133E-05	9.0626	0.0054177	9.1415	0.0054648	597.8090579201768	71.531	0.83901	69.024	68.594	69.433	-2.5071	0.19647	0.0010306	NaN	65.278	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25911			30	1620	26	26							0.003764855726103633
AALKNLPL	8	Unmodified	_AALKNLPL_					0	0	0		ENST00000474422.1_1_2:223795406-223797999:+|nuORF;ENSG00000123983|ENST00000357430|ACSL3	ENST00000474422.1_1_2:223795406-223797999:+|nuORF	ENST00000474422.1_1_2:223795406-223797999:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	420.270751953125	2	420.271096	838.527639	-1.0841	-0.00045562	1.3621	0.00057247	0.27804	0.00011685	420.27150279297234	121.04	1.2252	119.7	119.39	120.62	-1.3479					46	23	3	0	0	0	0.65582	1	11410	11410		52.299	0	1	105860			31	3618	27	27	27	27					0.1019158062807719
AALLKRQHR	9	Unmodified	_AALLKRQHR_					0	0	0			REV__SARNP-KCNN4|1|fusion	REV__SARNP-KCNN4|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.8126220703125	2	546.841074	1091.66759	-0.36753	-0.00020098	-3.1591	-0.0017275	-3.5267	-0.0019285	546.8396371393164	78.888	0.189	76.137	76.038	76.227	-2.7514					6	3	2	0	0	0	0.027462	1	6379	6379		47.916	1.9636	1	16394	+		32	17681	28	28	28	28					0.12542757685150718
AALLLPIKRRI	11	Unmodified	_AALLLPIKRRI_					0	0	0		tr|A0A553SIR7|A0A553SIR7_NIACIZIPfamilymetaltransporterOS=NialliacirculansOX=1397GN=CEQ21_15370PE=4SV=1	tr|A0A553SIR7|A0A553SIR7_NIACIZIPfamilymetaltransporterOS=NialliacirculansOX=1397GN=CEQ21_15370PE=4SV=1	tr|A0A553SIR7|A0A553SIR7_NIACIZIPfamilymetaltransporterOS=NialliacirculansOX=1397GN=CEQ21_15370PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	632.430908203125	2	632.434807	1262.85506	-5.7395	-0.0036299	-0.067111	-4.2443E-05	-5.8066	-0.0036723	632.4345273657251	163.44	1.2114	163.21	162.72	163.93	-0.22696					106	40	3	0	0	0	0.72571	1	16661	16661		6.3127	3.1534	1	356230			33	33418	29	29	29	29					0.2341477616987504
AALLQPRRRS	10	Unmodified	_AALLQPRRRS_					0	0	0			REV__ENST00000278426.7_2_11:57281475-57283007:-|nuORF	REV__ENST00000278426.7_2_11:57281475-57283007:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3557739257812	2	584.357088	1166.69962	-2.312	-0.0013511	1.1487	0.00067126	-1.1633	-0.0006798	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.79213	1	14682	14682		19.997	0.89325	1	180810	+		34	24108	30	30	30	30					0.12294125368293862
AALLRPDAALL	11	Unmodified	_AALLRPDAALL_					0	0	0		ENSG00000123095|ENST00000242728|BHLHE41	ENSG00000123095|ENST00000242728|BHLHE41	ENSG00000123095|ENST00000242728|BHLHE41	MULTI-MSMS	OvCa9_classI_Rep2	2	562.3423461914062	2	562.345323	1122.67609	-1.142	-0.00064221	-2.621	-0.0014739	-3.7631	-0.0021161	562.3438081477608	141.84	4.7959	141.62	140.24	145.03	-0.22697					133	96	2	0	0	0	0.71789	1	14224	14224		23.523	2.5758	1	113870			35	3570	31	31	31	31					0.11966266811100468
AALLSHVVFLG	11	Unmodified	_AALLSHVVFLG_					0	0	0			REV__tr|A0A7D7A1Y8|A0A7D7A1Y8_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_17470PE=4SV=1	REV__tr|A0A7D7A1Y8|A0A7D7A1Y8_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_17470PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	564.79736328125	2	563.834591	1125.65463	0.20412	0.00011509	0.4373	0.00024657	0.64142	0.00036165	563.8346895187073	31.775	0.69173	29.066	28.789	29.481	-2.7097					19	13	2	0	0	0	0.026149	1	997	997		23.042	3.0457	1	13272	+		36	32514	32	32	32	32					0.0968288178239618
AALPRFHLVSK	11	Unmodified	_AALPRFHLVSK_					0	0	0		ZNF280C|p.S105L|1|0.44|ENSG00000056277|chrX:130243630-130243630|G/A|missense_variant	ZNF280C|p.S105L|1|0.44|ENSG00000056277|chrX:130243630-130243630|G/A|missense_variant	ZNF280C|p.S105L|1|0.44|ENSG00000056277|chrX:130243630-130243630|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.86865234375	2	619.87204	1237.72953	-3.1194	-0.0019336	-1.2014	-0.00074472	-4.3208	-0.0026783	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.71789	1	15106	15106		23.523	0.94304	1	806750			37	36319	33	33	33	33					0.12017064313636183
AALRDRVHTE	10	Unmodified	_AALRDRVHTE_					0	0	0		nc|ENSG00000072121|Q68DK2-3|ZFYVE26;ENST00000394455.6_1_14:68196461-68236507:-|nuORF	nc|ENSG00000072121|Q68DK2-3|ZFYVE26	nc|ENSG00000072121|Q68DK2-3|ZFYVE26	MULTI-MSMS	OvCa99_classI_Rep5	1	584.3156127929688	2	584.315086	1166.61562	-0.67439	-0.00039406	1.067	0.00062348	0.39264	0.00022942	584.3156527662852	24.262	0.44848	24.262	24.137	24.586	0					20	8	4	0	0	0	0.73378	1	425	425		26.693	0	1	241840			38	11264	34	34	34	34					0.03897549480757334
AALRGLLGAL	10	Unmodified	_AALRGLLGAL_					0	0	0		ENST00000517801.5_1_8:130863079-130874553:-|nuORF;ENST00000523288.5_1_8:130864395-130891707:-|nuORF;FAM49B|p.L263Yfs*20|1|0.05|ENSG00000153310|chr8:129849297-129849298|-/AA|frameshift_variant;FAM49B|p.I262Sfs*29|1|0.05|ENSG00000153310|chr8:129849299-129849300|-/GGCCTTTGGCCAAAGGAATTAAAGGA|frameshift_variant;ENSG00000153310|ENST00000694912|CYRIB;chr8:129855744-129862229|119|14.09|0.37|5.26|-|2|None,CYRIB|1	ENST00000517801.5_1_8:130863079-130874553:-|nuORF	ENST00000517801.5_1_8:130863079-130874553:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.80926513671875	2	477.808377	953.6022	0.96609	0.0004616	-1.3912	-0.00066474	-0.42514	-0.00020314	477.80761077974176	67.155	1.5749	63.665	62.951	64.526	-3.4902					76	31	4	0	0	0	0.58282	1	4930	4930		44.117	3.5442	1	443930			39	5677	35	35	35	35					0.12354343439471904
AAMLDTVVFK	10	Unmodified	_AAMLDTVVFK_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14;ENST00000477232.5_1_2:162241962-162267908:+|nuORF;ENST00000492908.1_1_2:162265323-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	OvCa99_classI_Rep5	1	547.801513671875	2	547.79936	1093.58417	-2.5838	-0.0014154	-0.81768	-0.00044792	-3.4015	-0.0018633	547.7987764871438	103.91	1.063	103.91	103.55	104.62	0					70	24	4	0	0	0	0.022295	2	11646	11620;11646		145.16	62.915	1	11636000			40	3073	36	36	36;37	37					0.04111840402447342
AAMLDTVVFK	10	Unmodified	_AAMLDTVVFK_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14;ENST00000477232.5_1_2:162241962-162267908:+|nuORF;ENST00000492908.1_1_2:162265323-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MATCH	OvCa9_classI_Rep2	2		2	547.79936	1093.58417	-0.47592	-0.00026071	0.16139	8.841E-05	-0.31453	-0.0001723	547.7994188170571	104.35	0.93984	103.77	103.47	104.41	-0.57639	-0.0078601	0.00027377	NaN	145.16	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90310			41	3073	36	36							0.04111840402447342
AAMLDTVVFK	10	Unmodified	_AAMLDTVVFK_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14;ENST00000477232.5_1_2:162241962-162267908:+|nuORF;ENST00000492908.1_1_2:162265323-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MATCH	OvCa9_classI_Rep3	3		2	547.79936	1093.58417	-0.10554	-5.7812E-05	0.13527	7.4099E-05	0.029732	1.6287E-05	547.7994512654072	105.08	0.83308	103.73	103.47	104.3	-1.3482	-0.047133	0.00024515	NaN	145.16	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121540			42	3073	36	36							0.04111840402447342
AAMLDTVVFK	10	Unmodified	_AAMLDTVVFK_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14;ENST00000477232.5_1_2:162241962-162267908:+|nuORF;ENST00000492908.1_1_2:162265323-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	547.79936	1093.58417	-0.47026	-0.00025761	0.32067	0.00017566	-0.14959	-8.1945E-05	547.7995502202155	105.72	0.85923	103.7	103.4	104.26	-2.0161	-0.077325	0.00044827	NaN	145.16	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130390			43	3073	36	36							0.04111840402447342
AAMQDPEVM	9	Unmodified	_AAMQDPEVM_					0	0	0		ENSG00000100380|ENST00000216218|ST13;nc|ENSG00000212789|Q8NFI4|ST13P5	ENSG00000100380|ENST00000216218|ST13	ENSG00000100380|ENST00000216218|ST13	MULTI-MSMS	OvCa99_classI_Rep5	1	496.2156982421875	2	496.214803	990.415053	1.7888	0.00088762	0.20235	0.00010041	1.9911	0.00098802	496.2147464193884	82.878	0.64103	82.878	82.652	83.293	0					32	14	3	0	0	0	0.35444	1	8597	8597		56.721	5.3856	1	2126900			44	2059	37	37	38	38					-0.0805380422257258
AANKRGARI	9	Unmodified	_AANKRGARI_					0	0	0			REV__ENSG00000204599|ENST00000396551|TRIM39	REV__ENSG00000204599|ENST00000396551|TRIM39	MULTI-MSMS	OvCa9_classI_Rep2	2	478.79254150390625	2	478.79105	955.567546	0.14193	6.7955E-05	1.5566	0.00074528	1.6985	0.00081323	478.7916935444692	82.342	2.8721	80.713	80.198	83.07	-1.6293					121	56	4	0	0	0	0.38529	1	7013	7013		53.351	5.4358	1	897530	+		45	23172	38	38	39	39					0.08798520351376737
AANKVVLQL	9	Unmodified	_AANKVVLQL_					0	0	0		ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	MULTI-MSMS	OvCa9_classI_Rep2	2	478.2999572753906	2	478.300384	954.586216	0.13338	6.3796E-05	-1.0993	-0.00052578	-0.96589	-0.00046199	478.2997121772516	86.734	1.3256	85.303	84.962	86.288	-1.4311					71	25	4	0	0	0	0.079296	4	7541	7537;7541;7547;7553		102.77	29.426	1	552120			46	6967	39	39	40;41;42;43	41					0.10710637202578255
AANKVVLQL	9	Unmodified	_AANKVVLQL_					0	0	0		ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	ENSG00000169019|ENST00000381571|COMMD8	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.3017578125	2	478.300384	954.586216	-1.9526	-0.00093391	-0.25014	-0.00011964	-2.2027	-0.0010536	478.3001635603855	87.855	1.3099	85.229	84.952	86.262	-2.6269					63	25	4	0	0	0	0.22961	2	7472	7472;7484		71.296	10.005	1	743720			47	6967	39	39	44;45	44					0.10710637202578255
AAPEEPPRQL	10	Unmodified	_AAPEEPPRQL_					0	0	0			REV__ENSG00000123999|ENST00000243786|INHA	REV__ENSG00000123999|ENST00000243786|INHA	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.2938842773438	2	554.293288	1106.57202	-0.19102	-0.00010588	-1.3608	-0.00075428	-1.5518	-0.00086016	554.2931816622083	63.221	1.5941	59.746	59.386	60.98	-3.475					83	32	6	0	0	0	0.53885	1	4444	4444		49.442	8.0149	1	716740	+		48	18658	40	40	46	46					0.0229993998361806
AAPFAILFSL	10	Unmodified	_AAPFAILFSL_					0	0	0		tr|A0A553SF65|A0A553SF65_NIACIEffluxRNDtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08280PE=4SV=1	tr|A0A553SF65|A0A553SF65_NIACIEffluxRNDtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08280PE=4SV=1	tr|A0A553SF65|A0A553SF65_NIACIEffluxRNDtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08280PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.2844848632812	2	525.305136	1048.59572	-0.43352	-0.00022773	-0.3833	-0.00020135	-0.81682	-0.00042908	525.3046516286354	114.39	1.4881	113.33	113.05	114.54	-1.055					63	29	4	0	0	0	0.026519	1	8502	8502		76.847	5.4687	1	148950			49	32996	41	41	47	47					0.07336405488103992
AAPHPRPASR	10	Unmodified	_AAPHPRPASR_					0	0	0		nc|ENSG00000168061|A6NKF1-2|SAC3D1;nc|ENSG00000168061|A6NKF1|SAC3D1	nc|ENSG00000168061|A6NKF1-2|SAC3D1	nc|ENSG00000168061|A6NKF1-2|SAC3D1	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.3048706054688	2	530.293956	1058.57336	-1.4898	-0.00079006	3.2716	0.0017349	1.7817	0.00094484	530.2958234853693	103.68	0.93786	103.11	102.63	103.57	-0.57639					41	18	3	0	0	0	0.026551	1	9605	9605		42.864	10.052	1	105610			50	15164	42	42	48	48					0.046416188630246324
AAPKIIWIN	9	Unmodified	_AAPKIIWIN_					0	0	0			REV__ENSG00000138892|ENST00000433387|TTLL8	REV__ENSG00000138892|ENST00000433387|TTLL8	MULTI-MSMS	OvCa99_classI_Rep5	1	513.3126220703125	2	513.310752	1024.60695	-0.21894	-0.00011238	0.24605	0.0001263	0.027114	1.3918E-05	513.3107760483713	104.95	0.8735	104.95	104.7	105.57	0					54	19	4	0	0	0	0.16524	1	11782	11782		82.305	4.9875	1	7945300	+		51	19584	43	43	49	49					0.09563227582248146
AAPLTPRLLP	10	Unmodified	_AAPLTPRLLP_					0	0	0			REV__nc|ENSG00000117625|Q9P2K3|RCOR3	REV__nc|ENSG00000117625|Q9P2K3|RCOR3	MULTI-MSMS	OvCa9_classI_Rep2	2	524.827392578125	2	524.829309	1047.64407	-4.3888	-0.0023034	0.2202	0.00011557	-4.1686	-0.0021878	524.8292785030237	156.45	1.4045	156.23	155.89	157.3	-0.22696					98	36	4	0	0	0	0.81992	1	15972	15972		16.473	0.83134	1	556080	+		52	18362	44	44	50	50					0.12214899127980061
AAPLVRGRRP	10	Unmodified	_AAPLVRGRRP_					0	0	0			REV__ENST00000177694.1_1_17:45810693-45811185:+|nuORF	REV__ENST00000177694.1_1_17:45810693-45811185:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	546.8399658203125	2	546.841074	1091.66759	-4.8246	-0.0026383	3.4883	0.0019075	-1.3363	-0.00073075	546.8429110027589	158.57	1.287	158.34	158.06	159.35	-0.22697					77	26	5	0	0	0	0.76627	1	16104	16104		23.042	1.0826	1	487190	+		53	23688	45	45	51	51					0.12542757685173456
AAPRRRIQIT	10	Unmodified	_AAPRRRIQIT_					0	0	0		ENST00000568961.5_1_16:71915334-71918023:-|nuORF;ENST00000313565.10_1_16:71898855-71918020:-|nuORF	ENST00000568961.5_1_16:71915334-71918023:-|nuORF	ENST00000568961.5_1_16:71915334-71918023:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	592.3027954101562	2	591.364913	1180.71527	-0.83278	-0.00049247	0.66371	0.00039249	-0.16907	-9.998E-05	591.3652189051475	54.353	1.2303	51.106	50.722	51.953	-3.2474					58	23	3	0	0	0	0.027145	1	3401	3401		18.262	0	1	118570			54	10314	46	46	52	52					0.13214411885360278
AAPRRRIQIT	10	Unmodified	_AAPRRRIQIT_					0	0	0		ENST00000568961.5_1_16:71915334-71918023:-|nuORF;ENST00000313565.10_1_16:71898855-71918020:-|nuORF	ENST00000568961.5_1_16:71915334-71918023:-|nuORF	ENST00000568961.5_1_16:71915334-71918023:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	591.364913	1180.71527	-1.5338	-0.00090706	1.3924	0.00082341	-0.14146	-8.3654E-05	591.3655587650738	53.892	1.3954	51.079	50.727	52.122	-2.8139	-0.0135	0.00045738	NaN	22.58	65	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130800			55	10314	46	46							0.13214411885360278
AAPTEIMGIAR	11	Unmodified	_AAPTEIMGIAR_					0	0	0			REV__tr|A0A553SFI9|A0A553SFI9_NIACISporecoatproteinCotOOS=NialliacirculansOX=1397GN=CEQ21_08955PE=4SV=1	REV__tr|A0A553SFI9|A0A553SFI9_NIACISporecoatproteinCotOOS=NialliacirculansOX=1397GN=CEQ21_08955PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.3067626953125	2	565.305341	1128.59613	3.3072	0.0018696	2.2579	0.0012764	5.5651	0.003146	565.3064668312807	136.75	0.73138	135.21	135.03	135.76	-1.5437					24	14	2	0	0	0	0.68021	1	13295	13295		36.447	0	1	53938	+		56	29584	47	47	53	53					0.03697457145631233
AAQAELLPLAT	11	Unmodified	_AAQAELLPLAT_					0	0	0			REV__EPPK1|p.L2159Ffs*20|1|0.06|ENSG00000261150|chr8:143866777-143866778|-/G|frameshift_variant	REV__EPPK1|p.L2159Ffs*20|1|0.06|ENSG00000261150|chr8:143866777-143866778|-/G|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.3364868164062	2	549.313689	1096.61282	-0.14892	-8.1802E-05	-2.1858	-0.0012007	-2.3347	-0.0012825	549.3127124057607	31.051	0.2905	31.051	30.881	31.171	0					9	5	3	0	0	0	0.025418	1	1258	1258		40.058	7.2458	1	53805	+		57	23566	48	48	54	54					0.0683828130324855
AAQAELLPLAT	11	Unmodified	_AAQAELLPLAT_					0	0	0			REV__EPPK1|p.L2159Ffs*20|1|0.06|ENSG00000261150|chr8:143866777-143866778|-/G|frameshift_variant	REV__EPPK1|p.L2159Ffs*20|1|0.06|ENSG00000261150|chr8:143866777-143866778|-/G|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	549.313689	1096.61282	-0.82697	-0.00045427	-1.4385	-0.00079021	-2.2655	-0.0012445	549.8146261481165	33.766	0.29536	31.056	30.922	31.218	-2.7097	0.09335	-0.00061702	NaN	40.058	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17258	+		58	23566	48	48							0.0683828130324855
AAQAELLPLAT	11	Unmodified	_AAQAELLPLAT_					0	0	0			REV__EPPK1|p.L2159Ffs*20|1|0.06|ENSG00000261150|chr8:143866777-143866778|-/G|frameshift_variant	REV__EPPK1|p.L2159Ffs*20|1|0.06|ENSG00000261150|chr8:143866777-143866778|-/G|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	549.313689	1096.61282	0.55007	0.00030216	1.3145	0.00072207	1.8646	0.0010242	549.3144904757489	33.569	0.34589	30.781	30.608	30.953	-2.7881	-0.18201	0.0024076	NaN	40.058	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6043.5	+		59	23566	48	48							0.0683828130324855
AAQAHTREL	9	Unmodified	_AAQAHTREL_					0	0	0		ENSG00000103549|ENST00000324685|RNF40;nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;nc|ENSG00000103549|O75150-4|RNF40	ENSG00000103549|ENST00000324685|RNF40	ENSG00000103549|ENST00000324685|RNF40	MULTI-MSMS	OvCa99_classI_Rep5	1	498.7646179199219	2	498.764697	995.514842	-0.41879	-0.00020888	0.019638	9.7946E-06	-0.39916	-0.00019909	498.76460586452146	29.711	0.60033	29.711	29.536	30.136	0					29	11	4	0	0	0	0.22621	1	1090	1090		71.877	0.58177	1	745420			60	2330	49	49	55	55					0.016905174979115145
AAQAWGAY	8	Unmodified	_AAQAWGAY_					0	0	0			REV__nc|ENSG00000114026|O15527-8|OGG1	REV__nc|ENSG00000114026|O15527-8|OGG1	MULTI-MSMS	OvCa9_classI_Rep2	2	419.19842529296875	2	419.198128	836.381703	-0.68643	-0.00028775	0.85141	0.00035691	0.16498	6.9159E-05	419.1983518447222	49.852	2.9249	47.058	46.686	49.611	-2.794					110	58	3	0	0	0	0.72922	1	3202	3202		37.028	0	1	731490	+		61	28804	50	50	56	56					-0.04303301887955513
AAQGKTRTL	9	Unmodified	_AAQGKTRTL_					0	0	0		ENSG00000143333|ENST00000367558|RGS16	ENSG00000143333|ENST00000367558|RGS16	ENSG00000143333|ENST00000367558|RGS16	MULTI-MSMS	OvCa99_classI_Rep5	1	473.2772216796875	2	473.277441	944.540328	-0.83229	-0.00039391	0.52497	0.00024846	-0.30732	-0.00014545	473.27752099996314	27.316	0.54923	27.316	27.142	27.691	0					21	10	3	0	0	0	0.17606	1	792	792		80.455	42.643	1	263950			62	5036	51	51	57	57					0.06583992020341611
AAQKRAQSI	9	Unmodified	_AAQKRAQSI_					0	0	0			REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	486.7829284667969	2	486.78289	971.551228	0.43908	0.00021374	-0.52243	-0.00025431	-0.083348	-4.0573E-05	486.7825302648535	31.131	0.98493	28.421	28.248	29.233	-2.7097					37	19	4	0	0	0	0.48324	1	918	918		44.117	3.3386	1	171450	+		63	17513	52	52	58	58					0.06431394394610379
AARAAQRRRR	10	Unmodified	_AARAAQRRRR_					0	0	0		nc|ENSG00000136444|Q9HA92-2|RSAD1;ENST00000443328.2_1_17:48556221-48557532:+|nuORF;ENSG00000136444|ENST00000258955|RSAD1	nc|ENSG00000136444|Q9HA92-2|RSAD1	nc|ENSG00000136444|Q9HA92-2|RSAD1	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3689575195312	2	606.368853	1210.72315	-3.14	-0.001904	4.3686	0.002649	1.2286	0.00074499	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.7759	1	15039	15039		21.96	1.013	1	257720			64	4489	53	53	59	59					0.12621983925487257
AARARALLVP	10	Unmodified	_AARARALLVP_					0	0	0		ENST00000259006.7_2_17:61777393-61777495:-|nuORF	ENST00000259006.7_2_17:61777393-61777495:-|nuORF	ENST00000259006.7_2_17:61777393-61777495:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	519.332763671875	2	519.33255	1036.65055	0.67622	0.00035118	-1.2042	-0.00062537	-0.52796	-0.00027419	519.3318594599918	71.111	1.2027	68.392	68.008	69.211	-2.7196					78	23	4	0	0	0	0.59703	1	3294	3294		42.396	5.237	1	1378400			65	9839	54	54	60	60					0.1336883707938341
AARAVTGVL	9	Unmodified	_AARAVTGVL_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	429.2643127441406	2	429.263802	856.513051	1.9723	0.00084662	-2.0984	-0.00090077	-0.12614	-5.4149E-05	429.26283400884654	67.703	1.3741	64.213	63.888	65.262	-3.4902					73	27	3	0	0	0	0.12515	2	4989	4979;4989		90.37	21.583	1	985440			66	1073	55	55	61;62	62					0.07905508479962009
AARAVTGVL	9	Unmodified	_AARAVTGVL_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	429.263802	856.513051	-0.44452	-0.00019082	0.55118	0.0002366	0.10666	4.5783E-05	429.26390501606284	66.949	1.4877	64.288	63.701	65.189	-2.661	0.037644	0.0011894	NaN	90.37	77	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209690			67	1073	55	55							0.07905508479962009
AARIDQTL	8	Unmodified	_AARIDQTL_					0	0	0			REV__ENST00000475011.1_1_7:100230563-100231157:-|nuORF	REV__ENST00000475011.1_1_7:100230563-100231157:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	444.2505187988281	2	444.250892	886.48723	1.3499	0.00059967	-1.3711	-0.00060911	-0.021233	-9.4329E-06	444.2501838124347	46.728	1.6349	44.018	43.696	45.331	-2.7097					87	32	4	0	0	0	0.38598	1	2832	2832		90.777	3.0224	1	733010	+		68	17793	56	56	63	63					0.03944614237661881
AARIPMTVL	9	Unmodified	_AARIPMTVL_					0	0	0			REV__ENSG00000168813|ENST00000355898|ZNF507	REV__ENSG00000168813|ENST00000355898|ZNF507	MULTI-MSMS	OvCa9_classI_Rep2	2	486.288818359375	2	486.288963	970.563372	-0.051282	-2.4938E-05	0.13101	6.3706E-05	0.079724	3.8769E-05	486.28890972170547	95.271	2.7144	94.243	93.482	96.196	-1.0281					110	54	3	0	0	0	0.24951	2	8559	8559;8617		68.787	1.2168	1	2640800	+		69	21408	57	57	64;65	64					0.07691294813446348
AARIPMTVL	9	Unmodified	_AARIPMTVL_					0	0	0			REV__ENSG00000168813|ENST00000355898|ZNF507	REV__ENSG00000168813|ENST00000355898|ZNF507	MULTI-MSMS	OvCa9_classI_Rep3	3	486.2900695800781	2	486.288963	970.563372	-1.3386	-0.00065093	1.302	0.00063316	-0.036553	-1.7776E-05	486.28968430992785	96.173	2.6618	94.345	93.531	96.193	-1.8286					91	52	2	0	0	0	0.24951	1	6330	6330		68.787	0.30212	1	3287800	+		70	21408	57	57	66	66					0.07691294813446348
AARIPMTVL	9	Unmodified	_AARIPMTVL_					0	0	0			REV__ENSG00000168813|ENST00000355898|ZNF507	REV__ENSG00000168813|ENST00000355898|ZNF507	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.2890930175781	2	486.288963	970.563372	1.0523	0.00051172	-0.39232	-0.00019078	0.65997	0.00032094	486.2884483834136	96.773	2.621	94.348	93.609	96.23	-2.4256					142	51	5	0	0	0	0.33652	1	8535	8535		58.782	0.97068	1	3468200	+		71	21408	57	57	67	67					0.07691294813446348
AARLPLLLL	9	Unmodified	_AARLPLLLL_					0	0	0			REV__nc|ENSG00000254402|Q50LG9|LRRC24	REV__nc|ENSG00000254402|Q50LG9|LRRC24	MULTI-MSMS	OvCa9_classI_Rep2	2	490.33660888671875	2	490.33677	978.658987	0.31976	0.00015679	-1.1553	-0.00056648	-0.83553	-0.00040969	490.3362879264998	135.18	3.9777	134.96	134.64	138.62	-0.22697					225	81	5	0	0	0	0.59983	1	13527	13527		31.955	0	1	7114000	+		72	29173	58	58	68	68					0.16880390996004735
AARPATSTL	9	Unmodified	_AARPATSTL_					0	0	0		ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.E1239Rfs*4|1|0.06|ENSG00000114867|chr3:184327639-184327639|G/-|frameshift_variant	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	444.2513122558594	2	444.250892	886.48723	1.3499	0.00059967	-1.3711	-0.00060911	-0.021233	-9.4329E-06	444.2501838124347	46.728	1.6349	44.018	43.696	45.331	-2.7097					87	32	4	0	0	0	0.059253	2	2806	2800;2806		113.41	5.4645	1	733010			73	3048	59	59	69;70	70					0.03944614237661881
AARRAALH	8	Unmodified	_AARRAALH_					0	0	0			REV__ENSG00000184451|ENST00000332438|CCR10	REV__ENSG00000184451|ENST00000332438|CCR10	MULTI-MSMS	OvCa9_classI_Rep3	3	433.25653076171875	2	433.259385	864.504218	-6.3475	-0.0027501	-2.7123	-0.0011751	-9.0598	-0.0039253	433.2581836061101	163.98	0.2774	162.59	162.42	162.69	-1.3925					16	5	4	0	0	0	0.75991	1	14312	14312		21.702	0	1	874160	+		74	22429	60	60	71	71					0.06654579634107449
AARRAALH	8	Unmodified	_AARRAALH_					0	0	0			REV__ENSG00000184451|ENST00000332438|CCR10	REV__ENSG00000184451|ENST00000332438|CCR10	MULTI-MSMS	OvCa9_classI_Rep4_	4	433.2557067871094	2	433.259385	864.504218	-5.7476	-0.0024902	-4.1265	-0.0017878	-9.8741	-0.004278	433.25778720504144	164.1	0.24614	162.46	162.36	162.61	-1.6336					19	5	4	0	0	0	0.74595	1	16219	16219		14.664	4.4793	1	709030	+		75	22429	60	60	72	72					0.06654579634107449
AARRRAGGPGA	11	Unmodified	_AARRRAGGPGA_					0	0	0			REV__ENST00000262158.6_1_18:46476255-46476423:-|nuORF	REV__ENST00000262158.6_1_18:46476255-46476423:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.3451538085938	2	520.29703	1038.57951	3.511	0.0018268	-2.1981	-0.0011437	1.3129	0.00068309	520.2955348059595	26.008	0.67249	23.299	23.033	23.706	-2.7097					20	15	2	0	0	0	0.026056	1	291	291		20.947	9.4359	1	12545	+		76	23969	61	61	73	73					0.061761370945760063
AARTTKKRIPN	11	Unmodified	_AARTTKKRIPN_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX;ATRX|p.I1049Nfs*4|1|0.39|ENSG00000085224|chrX:77682110-77682111|-/T|frameshift_variant;nc|ENSG00000085224|P46100-6|ATRX;ATRX|p.R1371Kfs*6|1|0.17|ENSG00000085224|chrX:77663389-77663390|TC/-|frameshift_variant;ATRX|p.Y1667Sfs*13|1|0.04|ENSG00000085224|chrX:77633341-77633341|T/-|frameshift_variant	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	OvCa9_classI_Rep4_	4	628.38134765625	2	628.383303	1254.75205	-1.7019	-0.0010694	0.26231	0.00016483	-1.4396	-0.0009046	628.3832559511075	147.74	1.901	146.3	145.18	147.08	-1.435					72	37	2	0	0	0	0.71789	1	14548	14548		23.523	0	1	277210			77	1724	62	62	74	74					0.1348666371127365
AARTVPHGIY	10	Unmodified	_AARTVPHGIY_					0	0	0			REV__ENST00000450301.2_1_10:57427969-57428101:-|nuORF	REV__ENST00000450301.2_1_10:57427969-57428101:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	542.7962646484375	2	542.79854	1083.58253	-2.5657	-0.0013927	0.36969	0.00020066	-2.196	-0.001192	542.7985901751956	143.31	1.137	142.32	141.94	143.08	-0.9903					51	22	3	0	0	0	0.72319	1	11949	11949		27.882	1.1893	1	119450	+		78	25960	63	63	75	75					0.04407967428710435
AASEAGRAM	9	Unmodified	_AASEAGRAM_					0	0	0		ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	ENSG00000071859|ENST00000393600|FAM50A	MULTI-MSMS	OvCa99_classI_Rep5	1	432.2055358886719	2	432.205627	862.396701	0.39688	0.00017153	-0.5593	-0.00024173	-0.16242	-7.02E-05	432.2053120999591	31.584	0.6454	31.584	31.41	32.055	0					23	12	3	0	0	0	0.37135	1	1309	1309		54.776	8.8244	1	359290			79	1456	64	64	76	76					-0.04000178082264938
AASGVGRAEGV	11	Unmodified	_AASGVGRAEGV_					0	0	0		ENSG00000142599.19,RERE,chr1,-,I22.1,8423667,8424014|112|11.6|1|intron	ENSG00000142599.19,RERE,chr1,-,I22.1,8423667,8424014|112|11.6|1|intron	ENSG00000142599.19,RERE,chr1,-,I22.1,8423667,8424014|112|11.6|1|intron	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.2581481933594	2	487.256705	972.498858	-0.87759	-0.00042761	1.5611	0.00076066	0.68352	0.00033305	487.25712349468836	42.205	1.3938	39.224	38.959	40.352	-2.9804					82	26	5	0	0	0	0.34051	1	1942	1942		65.465	17.808	1	276190			80	4980	65	65	77	77					0.011508112609931231
AASGVGRAEGV	11	Unmodified	_AASGVGRAEGV_					0	0	0		ENSG00000142599.19,RERE,chr1,-,I22.1,8423667,8424014|112|11.6|1|intron	ENSG00000142599.19,RERE,chr1,-,I22.1,8423667,8424014|112|11.6|1|intron	ENSG00000142599.19,RERE,chr1,-,I22.1,8423667,8424014|112|11.6|1|intron	MULTI-MATCH	OvCa9_classI_Rep2	2		2	487.256705	972.498858	1.2015	0.00058542	-0.97636	-0.00047574	0.22509	0.00010968	487.25616103055137	41.862	1.0357	39.152	38.931	39.966	-2.7097	-0.036095	-0.00068882	NaN	65.465	30	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76521			81	4980	65	65							0.011508112609931231
AASKERSGVSL	11	Unmodified	_AASKERSGVSL_					0	0	0		ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000124575|ENST00000244534|H1-3	ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MULTI-MSMS	OvCa9_classI_Rep2	2	552.8038330078125	2	552.80402	1103.59349	1.7488	0.00096675	-2.2986	-0.0012707	-0.54983	-0.00030395	552.8027673574184	41.864	2.1726	39.155	38.881	41.054	-2.7097					165	43	7	0	0	0	0.053683	15	2223	2205;2211;2217;2223;2229;2235;2241;2248;2253;2259;2265;2272;2277;2284;2297		125.68	46.296	1	3653700			82	3662;6889;8438	66	66	78;79;80;81;82;83;84;85;86;87;88;89;90;91;92	81					0.04583325012345085
AASKERSGVSL	11	Unmodified	_AASKERSGVSL_					0	0	0		ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000124575|ENST00000244534|H1-3	ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.8048095703125	2	552.80402	1103.59349	-0.91093	-0.00050356	-0.22776	-0.0001259	-1.1387	-0.00062947	552.8040013901807	42.171	2.3611	39.191	38.853	41.215	-2.9804					216	45	7	0	0	0	0.050884	9	1957	1921;1933;1945;1957;1969;1981;1993;2006;2049		115.23	40.189	1	14361000			83	3662;6889;8438	66	66	93;94;95;96;97;98;99;100;101	96					0.04583325012345085
AASNLDPAALT	11	Unmodified	_AASNLDPAALT_					0	0	0		nc|ENSG00000141013|O95995-2|GAS8;ENSG00000141013|ENST00000268699|GAS8;ENST00000569558.5_1_16:90103573-90109750:+|nuORF;ENST00000540721.5_1_16:90089090-90108732:+|nuORF;ENST00000564789.5_1_16:90106452-90109750:+|nuORF	nc|ENSG00000141013|O95995-2|GAS8	nc|ENSG00000141013|O95995-2|GAS8	MULTI-MSMS	OvCa99_classI_Rep5	1	522.2735595703125	2	522.272021	1042.52949	-0.75597	-0.00039482	-0.29013	-0.00015153	-1.0461	-0.00054635	522.2718868405177	65.274	1.4969	65.274	64.955	66.452	0					101	37	5	0	0	0	0.26821	1	6049	6049		70.816	4.3869	1	39863000			84	4890	67	67	102	102					0.009925448553758542
AASSNQRVD	9	Unmodified	_AASSNQRVD_					0	0	0		ENST00000562331.5_1_16:74983814-75030914:-|nuORF;WDR59-CTRB1|1|fusion;nc|ENSG00000103091|Q6PJI9-2|WDR59;ENSG00000103091|ENST00000262144|WDR59	ENST00000562331.5_1_16:74983814-75030914:-|nuORF	ENST00000562331.5_1_16:74983814-75030914:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	474.251708984375	2	474.230687	946.446822	0.27094	0.00012849	-4.1924	-0.0019882	-3.9215	-0.0018597	474.22832417342033	62.697	0.8271	59.239	58.962	59.789	-3.4577					31	16	3	0	0	0	0.027462	1	4433	4433		16.717	0	1	78073			85	2282	68	68	103	103					-0.028543521527581106
AASTWEELVPP	11	Unmodified	_AASTWEELVPP_					0	0	0			REV__ENST00000421556.5_1_11:64494776-64511570:-|nuORF	REV__ENST00000421556.5_1_11:64494776-64511570:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	600.2990112304688	2	600.300778	1198.587	0.023114	1.3875E-05	-3.0498	-0.0018308	-3.0267	-0.0018169	600.2989237607527	71.554	2.0411	69.047	68.229	70.27	-2.5071					84	38	3	0	0	0	0.46188	1	5771	5771		47.657	0	1	1019300	+		86	25605	69	69	104	104					-0.004346129390341957
AATAYSNFIMI	11	Unmodified	_AATAYSNFIMI_					0	0	0			REV__sp|Q6SW98|UL33_HCMVMG-proteincoupledreceptorhomologUL33OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL33PE=3SV=1	REV__sp|Q6SW98|UL33_HCMVMG-proteincoupledreceptorhomologUL33OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL33PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	601.305419921875	2	601.299724	1200.5849	1.4821	0.00089119	3.4413	0.0020692	4.9234	0.0029604	601.30219782033	149.77	2.5731	149.77	149.4	151.97	0					182	51	8	0	0	0	0.31264	1	17557	17557		67.494	5.3863	1	11852000	+		87	29445	70	70	105	105					-0.007373649485089118
AATEPQKN	8	Unmodified	_AATEPQKN_					0	0	0			REV__nc|ENSG00000154305|Q5JRA6-2|MIA3;REV__ENST00000470521.1_1_1:222791452-222819114:+|nuORF	REV__nc|ENSG00000154305|Q5JRA6-2|MIA3	MULTI-SECPEP	OvCa99_classI_Rep5	1	429.3016052246094	2	429.719424	857.424296	0.57848	0.00024858	-0.81852	-0.00035173	-0.24004	-0.00010315	429.718982395188	66.745	0.36377	66.745	66.575	66.939	0					13	8	2	0	0	0	0.028476	1	6223	6223		68.787	15.435	1	265160	+		88	20376;26262	71	71	106	106					-0.010119515503788534
AATLEPKV	8	Unmodified	_AATLEPKV_					0	0	0			REV__ENSG00000135406|ENST00000257860|PRPH	REV__ENSG00000135406|ENST00000257860|PRPH	MSMS	OvCa99_classI_Rep5	1	414.7439270019531	2	414.744911	827.475269	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.554	1	39.554	39.054	40.054	0								0	0	0	0.30129	1	2335	2335		76.847	0	1		+		89	19284	72	72	107	107					0.054629974944646165
AATPALRASE	10	Unmodified	_AATPALRASE_					0	0	0			REV__tr|A0A7D6VMJ4|A0A7D6VMJ4_9CLOTNitroreductasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15665PE=3SV=1	REV__tr|A0A7D6VMJ4|A0A7D6VMJ4_9CLOTNitroreductasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15665PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.80133056640625	2	493.766906	985.519259	-0.2044	-0.00010092	-0.14276	-7.0492E-05	-0.34716	-0.00017142	493.7669421879049	46.912	0.79119	46.912	46.631	47.422	0					29	17	3	0	0	0	0.026523	1	3358	3358		52.937	0	1	1258900	+		90	31135	73	73	108	108					0.025919819207956607
AATPLRRT	8	Unmodified	_AATPLRRT_					0	0	0			REV__ENST00000562022.1_1_15:43093683-43094592:-|nuORF	REV__ENST00000562022.1_1_15:43093683-43094592:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.21600341796875	2	443.266876	884.519199	1.4421	0.00063923	-1.1185	-0.00049578	0.32361	0.00014344	443.2660967149974	45.434	0.64091	45.434	45.159	45.8	0					32	14	3	0	0	0	0.028476	1	3128	3128		38.806	18.324	1	506580	+		91	27643	74	74	109	109					0.07232026711460549
AATPRAHEVSE	11	Unmodified	_AATPRAHEVSE_					0	0	0		nc|ENSG00000170180|P02724-3|GYPA;nc|ENSG00000170180|P02724-2|GYPA;nc|ENSG00000170180|P02724|GYPA;ENSG00000170180|ENST00000641688|GYPA;ENST00000514603.1_1_4:145040770-145061788:-|nuORF	nc|ENSG00000170180|P02724-3|GYPA	nc|ENSG00000170180|P02724-3|GYPA	MULTI-SECPEP	OvCa9_classI_Rep2	2	584.3299560546875	2	584.291276	1166.568	0.20429	0.00011937	-0.57026	-0.0003332	-0.36597	-0.00021383	584.2907359167388	111.65	1.281	111.51	110.88	112.16	-0.13961					58	25	3	0	0	0	0.025265	1	10601	10601		35.152	5.982	1	74445			92	7079	75	75	110	110					-0.008621495100896936
AAVKKEIKLPT	11	Unmodified	_AAVKKEIKLPT_					0	0	0			REV__tr|A0A7D6VSK2|A0A7D6VSK2_9CLOTCrp/FnrfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23045PE=4SV=1	REV__tr|A0A7D6VSK2|A0A7D6VSK2_9CLOTCrp/FnrfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23045PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	599.3814697265625	2	599.381906	1196.74926	-5.9492	-0.0035659	4.2735	0.0025615	-1.6757	-0.0010044	599.3844944011306	164.14	0.27028	162.51	162.36	162.63	-1.6336					17	6	4	0	0	0	0.69808	1	16212	16212		30.318	1.1477	1	1190900	+		93	31513	76	76	111	111					0.15875395533726078
AAVLNAERL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AAVLNAERL_					1	0	0		ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	MULTI-MSMS	OvCa99_classI_Rep5	1	499.7868347167969	2	499.785099	997.555644	1.5939	0.00079663	1.1549	0.00057718	2.7488	0.0013738	499.7854977471157	118.7	0.70948	118.7	118.44	119.15	0					34	14	3	0	0	0	0.27001	1	13604	13604		66.429	8.618	1	615890			94	8028	77	77	112	112					0.05676858817514585
AAVLNAERL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AAVLNAERL_					1	0	0		ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	MULTI-MSMS	OvCa9_classI_Rep3	3	499.7845458984375	2	499.785099	997.555644	-0.41373	-0.00020678	0.037157	1.8571E-05	-0.37657	-0.0001882	499.785001315598	118.5	0.54613	117.47	117.19	117.73	-1.0271					28	10	3	0	0	0	0.31747	2	8960	8951;8960		60.972	15	1	170150			95	8028	77	77	113;114	114					0.05676858817514585
AAVLNAERL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AAVLNAERL_					1	0	0		ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	ENSG00000182827|ENST00000366812|ACBD3	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.7853088378906	2	499.785099	997.555644	-1.634	-0.00081666	2.4314	0.0012152	0.79743	0.00039854	499.78663317143213	118.74	1.2488	117.39	117.05	118.3	-1.3444					44	23	4	0	0	0	0.35444	2	11145	11133;11145		56.721	8.8055	1	240830			96	8028	77	77	115;116	116					0.05676858817514585
AAVSLGLGVAV	11	Unmodified	_AAVSLGLGVAV_					0	0	0		ENSG00000170113|ENST00000337435|NIPA1	ENSG00000170113|ENST00000337435|NIPA1	ENSG00000170113|ENST00000337435|NIPA1	MULTI-MSMS	OvCa99_classI_Rep5	1	478.7935791015625	2	478.792392	955.570232	2.2559	0.0010801	0.22682	0.0001086	2.4827	0.0011887	478.7924031970105	80.64	0.68088	80.64	80.399	81.08	0					39	15	4	0	0	0	0.32727	1	8293	8293		66.429	4.3219	1	2359000			97	7074	78	78	117	117					0.09066930965661868
AAVSVGHAQL	10	Unmodified	_AAVSVGHAQL_					0	0	0		ENST00000543473.1_1_12:118814449-118814500:+|nuORF	ENST00000543473.1_1_12:118814449-118814500:+|nuORF	ENST00000543473.1_1_12:118814449-118814500:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	476.7657470703125	2	476.764166	951.513779	0.2342	0.00011166	-0.18269	-8.7099E-05	0.051518	2.4562E-05	476.7640029544569	62.311	0.53982	62.311	62.081	62.621	0					26	12	3	0	0	0	0.20801	1	5533	5533		93.195	0.052222	1	1252900			98	13494	79	79	118	118					0.036083031289877
AAYEEVIREES	11	Unmodified	_AAYEEVIREES_					0	0	0		nc|ENSG00000113758|Q16643|DBN1;ENSG00000113758|ENST00000393565|DBN1	nc|ENSG00000113758|Q16643|DBN1	nc|ENSG00000113758|Q16643|DBN1	MULTI-MSMS	OvCa99_classI_Rep5	1	648.31005859375	2	648.309332	1294.60411	2.7543	0.0017856	-0.50474	-0.00032723	2.2495	0.0014584	648.3090886720773	75.615	0.46833	75.615	75.369	75.837	0					25	11	3	0	0	0	0.4397	1	7543	7543		58.246	16.82	1	717440			99	2993	80	80	119	119					-0.031407371238856285
AAYKEAFEI	9	Unmodified	_AAYKEAFEI_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF	ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	OvCa99_classI_Rep5	1	521.2667236328125	2	521.266207	1040.51786	2.8341	0.0014773	-0.73955	-0.0003855	2.0945	0.0010918	521.26569227539	88.114	0.8423	88.114	87.794	88.637	0					36	19	2	0	0	0	0.10502	1	9342	9342		95.815	26.188	1	6398200			100	3868	81	81	120	120					-0.0007765216794268781
ACALLGKK	8	Unmodified	_ACALLGKK_					0	0	0			REV__tr|A0A553SFH8|A0A553SFH8_NIACIDNA3'-5'helicaseOS=NialliacirculansOX=1397GN=CEQ21_08910PE=3SV=1	REV__tr|A0A553SFH8|A0A553SFH8_NIACIDNA3'-5'helicaseOS=NialliacirculansOX=1397GN=CEQ21_08910PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.21075439453125	2	402.244024	802.473494	0.41143	0.0001655	2.8354	0.0011405	3.2468	0.001306	402.2458185794004	27.842	0.25013	27.842	27.741	27.991	0					5	4	2	0	0	0	0.028476	1	846	846		8.2313	0	1	5218.3	+		101	29580	82	82	121	121					0.0643566520487866
ACFLHPVLV	9	Unmodified	_ACFLHPVLV_					0	0	0		ENSG00000187783|ENST00000389583|TMEM72	ENSG00000187783|ENST00000389583|TMEM72	ENSG00000187783|ENST00000389583|TMEM72	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.73095703125	2	499.778231	997.541908	-0.33007	-0.00016496	0.36822	0.00018403	0.038146	1.9064E-05	499.77842351772534	122.05	0.46424	120.7	120.51	120.98	-1.3479					12	8	2	0	0	0	0.027462	1	11542	11542		29.842	1.5873	1	16448			102	8434	83	83	122	122					0.04303909784721327
ACFLHPVLV	9	Unmodified	_ACFLHPVLV_					0	0	0		ENSG00000187783|ENST00000389583|TMEM72	ENSG00000187783|ENST00000389583|TMEM72	ENSG00000187783|ENST00000389583|TMEM72	MULTI-MATCH	OvCa9_classI_Rep2	2		2	499.778231	997.541908	-1.2784	-0.00063894	-0.43334	-0.00021658	-1.7118	-0.00085551	499.77845033135975	120.98	0.24631	120.78	120.56	120.8	-0.19718	0.039743	-0.00050841	NaN	21.702	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11362			103	8434	83	83							0.04303909784721327
ACFWRKKIL	9	Unmodified	_ACFWRKKIL_					0	0	0		ENST00000506323.1_1_4:101395197-101439143:-|nuORF	ENST00000506323.1_1_4:101395197-101439143:-|nuORF	ENST00000506323.1_1_4:101395197-101439143:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	582.837158203125	2	582.839154	1163.66375	0.27887	0.00016254	-4.4669	-0.0026035	-4.1881	-0.002441	582.8362711504487	124.91	1.0378	124.67	124.42	125.45	-0.2359					48	20	4	0	0	0	0.65476	1	12156	12156		25.45	0.93098	1	39604			104	12907	84	84	123	123					0.08846951867099051
ACHKIPVE	8	Unmodified	_ACHKIPVE_					0	0	0		ENSG00000164305|ENST00000308394|CASP3	ENSG00000164305|ENST00000308394|CASP3	ENSG00000164305|ENST00000308394|CASP3	MULTI-MSMS	OvCa99_classI_Rep5	1	448.73480224609375	2	448.736563	895.458573	0.046527	2.0878E-05	-3.2938	-0.001478	-3.2472	-0.0014572	448.73477851270786	38.555	0.57904	38.555	38.348	38.927	0					30	12	4	0	0	0	0.7043	1	2204	2204		42.474	5.3154	1	465860			105	6442	85	85	124	124					0.006661733368673595
ACKCPKIKPL	10	Unmodified	_ACKCPKIKPL_					0	0	0		ENSG00000065320|ENST00000173229|NTN1	ENSG00000065320|ENST00000173229|NTN1	ENSG00000065320|ENST00000173229|NTN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.297119140625	2	550.819573	1099.62459	-0.82682	-0.00045543	-0.84909	-0.00046769	-1.6759	-0.00092312	550.8187076651462	117.67	1.5239	116.33	116.05	117.58	-1.3444					51	28	3	0	0	0	0.027088	1	11046	11046		26.693	15.827	1	108480			106	1321	86	86	125	125					0.07876483521204136
ACKCPKIKPL	10	Unmodified	_ACKCPKIKPL_					0	0	0		ENSG00000065320|ENST00000173229|NTN1	ENSG00000065320|ENST00000173229|NTN1	ENSG00000065320|ENST00000173229|NTN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	550.819573	1099.62459	-0.30906	-0.00017023	0.081332	4.4799E-05	-0.22772	-0.00012544	550.8190455729822	116.44	1.0884	116.31	115.97	117.06	-0.12869	-0.017149	-0.00015459	NaN	19.997	57	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74312			107	1321	86	86							0.07876483521204136
ACKCPKIKPL	10	Unmodified	_ACKCPKIKPL_					0	0	0		ENSG00000065320|ENST00000173229|NTN1	ENSG00000065320|ENST00000173229|NTN1	ENSG00000065320|ENST00000173229|NTN1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	550.819573	1099.62459	-1.2766	-0.0007032	1.0123	0.00055761	-0.26432	-0.00014559	550.8195232751627	117.37	1.1887	116.34	116.04	117.23	-1.0324	0.014937	0.00087103	NaN	19.997	67	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111850			108	1321	86	86							0.07876483521204136
ACPESSSGQ	9	Unmodified	_ACPESSSGQ_					0	0	0			REV__nc|ENSG00000130305|Q96P11-3|NSUN5	REV__nc|ENSG00000130305|Q96P11-3|NSUN5	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1716613769531	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.51865	1	1581	1581		40.778	3.6191	1	60065	+		109	26284	87	87	126	126					-0.10924467452775843
ACPLWHLH	8	Unmodified	_ACPLWHLH_					0	0	0			REV__ENST00000560243.5_1_14:24734823-24736046:-|nuORF	REV__ENST00000560243.5_1_14:24734823-24736046:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	489.7393798828125	2	488.744722	975.474891	-1.1203	-0.00054754	1.8857	0.0009216	0.76535	0.00037406	488.74560464941493	118.76	0.57901	117.42	117.15	117.73	-1.3444					15	10	2	0	0	0	0.028476	1	11129	11129		24.504	0	1	18086	+		110	27613	88	88	127	127					-0.013827007063810015
ACPLWHLH	8	Unmodified	_ACPLWHLH_					0	0	0			REV__ENST00000560243.5_1_14:24734823-24736046:-|nuORF	REV__ENST00000560243.5_1_14:24734823-24736046:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	488.744722	975.474891	-0.9424	-0.00046059	1.9331	0.00094481	0.99072	0.00048421	488.745763719454	117.78	0.6458	117.63	117.44	118.08	-0.14755	0.10076	9.3598E-05	NaN	24.504	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6792.9	+		111	27613	88	88							-0.013827007063810015
ACPLWHLH	8	Unmodified	_ACPLWHLH_					0	0	0			REV__ENST00000560243.5_1_14:24734823-24736046:-|nuORF	REV__ENST00000560243.5_1_14:24734823-24736046:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	488.744722	975.474891	-0.55278	-0.00027017	1.3319	0.00065095	0.7791	0.00038078	488.74550988131796	118.57	0.49686	117.55	117.19	117.68	-1.0271	0.014607	-0.00049412	NaN	24.504	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17744	+		112	27613	88	88							-0.013827007063810015
ACPPEPPP	8	Unmodified	_ACPPEPPP_					0	0	0		ENSG00000027847|ENST00000029410|B4GALT7	ENSG00000027847|ENST00000029410|B4GALT7	ENSG00000027847|ENST00000029410|B4GALT7	MULTI-MSMS	OvCa9_classI_Rep4_	4	404.1852722167969	2	404.188914	806.363275	-4.7754	-0.0019302	-4.1855	-0.0016917	-8.961	-0.0036219	404.1871951904172	163.68	0.75046	162.04	161.73	162.48	-1.6336					39	20	2	0	0	0	0.75058	1	16196	16196		16.705	2.0409	1	62332			113	1056	89	89	128	128					-0.04765179854177859
ACPVLLKKRPN	11	Unmodified	_ACPVLLKKRPN_					0	0	0			REV__ISG20-UBA2|1|fusion	REV__ISG20-UBA2|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8685302734375	2	619.873725	1237.7329	-3.8587	-0.0023919	-3.029	-0.0018776	-6.8877	-0.0042695	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.70865	1	15267	15267		26.693	7.5894	1	492670	+		114	28316	90	90	129	129					0.12353991096006212
ACPVLLKKRPN	11	Unmodified	_ACPVLLKKRPN_					0	0	0			REV__ISG20-UBA2|1|fusion	REV__ISG20-UBA2|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8690185546875	2	619.873725	1237.7329	-3.6059	-0.0022352	-3.3723	-0.0020904	-6.9782	-0.0043256	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.72459	1	12767	12767		20.947	0.95016	1	664560	+		115	28316	90	90	130	130					0.12353991096006212
ACTNKVWQGL	10	Unmodified	_ACTNKVWQGL_					0	0	0			REV__ENSG00000165509|ENST00000298296|MAGEC3	REV__ENSG00000165509|ENST00000298296|MAGEC3	MULTI-MSMS	OvCa99_classI_Rep5	1	560.2847290039062	2	560.284408	1118.55426	0.084505	4.7347E-05	-2.7684	-0.0015511	-2.6839	-0.0015037	560.2825580294398	54.845	0.348	54.845	54.675	55.023	0					19	7	3	0	0	0	0.49558	1	4466	4466		54.776	0.053964	1	839810	+		116	21095	91	91	131	131					-0.00027098542886960786
ACWLAGVI	8	Unmodified	_ACWLAGVI_					0	0	0		ENSG00000204310|ENST00000375107|AGPAT1	ENSG00000204310|ENST00000375107|AGPAT1	ENSG00000204310|ENST00000375107|AGPAT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	416.55126953125	2	416.722924	831.431295	0.21756	9.0662E-05	4.3505	0.001813	4.5681	0.0019036	416.7242672207081	33.551	0.2467	33.551	33.434	33.681	0					6	4	2	0	0	0	0.028476	1	1548	1548		24.504	0	1	13900			117	8968	92	92	132	132					0.008836897964897616
ADALWWGL	8	Unmodified	_ADALWWGL_					0	0	0		nc|ENSG00000075043|O43526-6|KCNQ2;KCNQ2|p.S522Hfs*9|1|0.15|ENSG00000075043|chr20:63414155-63414156|-/GGGTG|frameshift_variant;nc|ENSG00000075043|O43526-4|KCNQ2;nc|ENSG00000075043|O43526-5|KCNQ2;nc|ENSG00000075043|O43526-3|KCNQ2;nc|ENSG00000075043|O43526-2|KCNQ2;ENSG00000075043|ENST00000359125|KCNQ2;ENST00000519589.1_1_8:133153289-133492518:-|nuORF;nc|ENSG00000184156|O43525-2|KCNQ3;KCNQ3|p.R780Lfs*21|1|0.2|ENSG00000184156|chr8:132129544-132129545|-/TAGGAAATGATGAAACCATCAAC|frameshift_variant;ENSG00000184156|ENST00000388996|KCNQ3	nc|ENSG00000075043|O43526-6|KCNQ2;KCNQ3|p.R780Lfs*21|1|0.2|ENSG00000184156|chr8:132129544-132129545|-/TAGGAAATGATGAAACCATCAAC|frameshift_variant	nc|ENSG00000075043|O43526-6|KCNQ2	MULTI-SECPEP	OvCa99_classI_Rep5	1	466.95355224609375	2	466.237253	930.459953	-0.38824	-0.00018101	-3.8081	-0.0017755	-4.1963	-0.0019565	466.2351318790708	55.365	0.32732	55.365	55.193	55.52	0					13	7	2	0	0	0	0.028476	1	4513	4513		25.45	0	1	345230			118	1521;8132	93	93	133	133					-0.008058693027237496
ADALWWGLITL	11	Unmodified	_ADALWWGLITL_					0	0	0		nc|ENSG00000075043|O43526-6|KCNQ2;KCNQ2|p.S522Hfs*9|1|0.15|ENSG00000075043|chr20:63414155-63414156|-/GGGTG|frameshift_variant;nc|ENSG00000075043|O43526-4|KCNQ2;nc|ENSG00000075043|O43526-5|KCNQ2;nc|ENSG00000075043|O43526-3|KCNQ2;nc|ENSG00000075043|O43526-2|KCNQ2;ENSG00000075043|ENST00000359125|KCNQ2;ENST00000519589.1_1_8:133153289-133492518:-|nuORF;nc|ENSG00000184156|O43525-2|KCNQ3;KCNQ3|p.R780Lfs*21|1|0.2|ENSG00000184156|chr8:132129544-132129545|-/TAGGAAATGATGAAACCATCAAC|frameshift_variant;ENSG00000184156|ENST00000388996|KCNQ3	nc|ENSG00000075043|O43526-6|KCNQ2;KCNQ3|p.R780Lfs*21|1|0.2|ENSG00000184156|chr8:132129544-132129545|-/TAGGAAATGATGAAACCATCAAC|frameshift_variant	nc|ENSG00000075043|O43526-6|KCNQ2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	420.92822265625	3	420.23253	1257.67576	-1.2531	-0.00052658	-0.28703	-0.00012062	-1.5401	-0.0006472	420.5662949888123	70.503	0.62784	67.021	66.787	67.415	-3.4812					13	12	2	0	0	0	0.025315	1	5319	5319		47.228	21.164	1	44469			119	1521;8132	94	94	134	134					0.05722847091283256
ADALWWGLITL	11	Unmodified	_ADALWWGLITL_					0	0	0		nc|ENSG00000075043|O43526-6|KCNQ2;KCNQ2|p.S522Hfs*9|1|0.15|ENSG00000075043|chr20:63414155-63414156|-/GGGTG|frameshift_variant;nc|ENSG00000075043|O43526-4|KCNQ2;nc|ENSG00000075043|O43526-5|KCNQ2;nc|ENSG00000075043|O43526-3|KCNQ2;nc|ENSG00000075043|O43526-2|KCNQ2;ENSG00000075043|ENST00000359125|KCNQ2;ENST00000519589.1_1_8:133153289-133492518:-|nuORF;nc|ENSG00000184156|O43525-2|KCNQ3;KCNQ3|p.R780Lfs*21|1|0.2|ENSG00000184156|chr8:132129544-132129545|-/TAGGAAATGATGAAACCATCAAC|frameshift_variant;ENSG00000184156|ENST00000388996|KCNQ3	nc|ENSG00000075043|O43526-6|KCNQ2;KCNQ3|p.R780Lfs*21|1|0.2|ENSG00000184156|chr8:132129544-132129545|-/TAGGAAATGATGAAACCATCAAC|frameshift_variant	nc|ENSG00000075043|O43526-6|KCNQ2	MULTI-MATCH	OvCa99_classI_Rep5	1		3	420.23253	1257.67576	0.32144	0.00013508	4.181	0.001757	4.5025	0.0018921	420.23442447264034	66.624	0.40385	66.624	66.412	66.816	0	-0.19857	0.00045332	NaN	47.228	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	531950			120	1521;8132	94	94							0.05722847091283256
ADASAIKGLL	10	Unmodified	_ADASAIKGLL_					0	0	0		tr|A0A553SJG7|A0A553SJG7_NIACIDUF86domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16770PE=3SV=1	tr|A0A553SJG7|A0A553SJG7_NIACIDUF86domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16770PE=3SV=1	tr|A0A553SJG7|A0A553SJG7_NIACIDUF86domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16770PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.7845764160156	2	479.782025	957.549496	1.4078	0.00067544	-1.025	-0.00049176	0.38283	0.00018367	479.7816242766973	85.53	1.5719	82.883	82.561	84.133	-2.6463					88	31	5	0	0	0	0.42962	1	7208	7208		64.207	2.0999	1	453630			121	33501	95	95	135	135					0.06902340586009359
ADAVMVDGGL	10	Unmodified	_ADAVMVDGGL_					0	0	0		CON__Q2HJF0	CON__Q2HJF0	CON__Q2HJF0	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.750244140625	2	474.228768	946.442982	-0.30728	-0.00014572	1.4275	0.00067698	1.1203	0.00053126	474.2284649109914	53.162	0.3898	53.162	52.999	53.389	0					12	8	3	0	0	0	0.026639	1	4240	4240		27.882	0	1	183300		+	122	639	96	96	136	136					-0.0323815797082716
ADCPVPITD	9	Unmodified	_ADCPVPITD_					0	0	0		ENST00000560078.1_1_15:41100333-41100738:+|nuORF;nc|ENSG00000166140|Q96K21-2|ZFYVE19	ENST00000560078.1_1_15:41100333-41100738:+|nuORF	ENST00000560078.1_1_15:41100333-41100738:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.75311279296875	2	465.715493	929.416433	-0.94015	-0.00043784	0.94198	0.00043869	0.0018326	8.5348E-07	465.7156920318906	56.175	0.79263	53.371	52.978	53.77	-2.804					24	15	2	0	0	0	0.027462	1	3913	3913		23.042	0	1	13180			123	13727	97	97	137	137					-0.05109846862183076
ADDFLPTLI	9	Unmodified	_ADDFLPTLI_					0	0	0		ENST00000461017.1_1_7:66262359-66272860:+|nuORF;ENSG00000154710|ENST00000284957|RABGEF1;nc|ENSG00000154710|Q9UJ41-4|RABGEF1;nc|ENSG00000154710|Q9UJ41-3|RABGEF1	ENST00000461017.1_1_7:66262359-66272860:+|nuORF	ENST00000461017.1_1_7:66262359-66272860:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	502.7706298828125	2	502.768583	1003.52261	1.4932	0.00075073	-0.13403	-6.7388E-05	1.3592	0.00068334	502.76845042847003	148.21	0.68797	148.21	147.93	148.62	0					26	13	3	0	0	0	0.29717	1	17337	17337		63.306	2.3343	1	101040			124	5748	98	98	138	138					0.020992319748188493
ADDKEACFAVE	11	Unmodified	_ADDKEACFAVE_					0	0	0		CON__P02769	CON__P02769	CON__P02769	MULTI-SECPEP	OvCa99_classI_Rep5	1	599.3015747070312	2	599.258253	1196.50195	0.57505	0.0003446	-1.1661	-0.00069878	-0.59102	-0.00035417	599.2567389830573	162.3	0.40305	162.3	162.02	162.43	0					9	7	2	0	0	0	0.025528	1	19008	19008		28.081	0	1	20819		+	125	618	99	99	139	139					-0.08843726467148372
ADEAGDTSEI	10	Unmodified	_ADEAGDTSEI_					0	0	0			REV__ENSG00000186566|ENST00000591680|GPATCH8	REV__ENSG00000186566|ENST00000591680|GPATCH8	MULTI-MSMS	OvCa99_classI_Rep5	1	504.21380615234375	2	504.211826	1006.4091	2.1712	0.0010948	1.2387	0.00062456	3.4099	0.0017193	504.2122391852433	95.192	0.71529	95.192	94.861	95.577	0					38	16	3	0	0	0	0.52321	1	10386	10386		51.335	0	1	1784200	+		126	22599	100	100	140	140					-0.0938490792890434
ADEAGDTSEI	10	Unmodified	_ADEAGDTSEI_					0	0	0			REV__ENSG00000186566|ENST00000591680|GPATCH8	REV__ENSG00000186566|ENST00000591680|GPATCH8	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	504.211826	1006.4091	2.1712	0.0010948	1.2387	0.00062456	3.4099	0.0017193	504.2122391852433	95.192	0.71529	95.192	94.861	95.577	0	0	0	NaN	51.335	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1784200	+		127	22599	100	100							-0.0938490792890434
ADEKITNINI	10	Unmodified	_ADEKITNINI_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MSMS	OvCa9_classI_Rep2	2	565.8092651367188	2	565.806228	1129.5979	1.7532	0.00099197	2.4612	0.0013926	4.2144	0.0023846	565.8074365868912	89.847	1.9606	88.545	88.087	90.047	-1.302					77	37	4	0	0	0	0.3094	1	7909	7909		79.713	5.4575	1	358310			128	8158	101	101	141	141					0.03828789435215185
ADEKITNINI	10	Unmodified	_ADEKITNINI_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	565.806228	1129.5979	-0.84249	-0.00047668	4.9479	0.0027995	4.1054	0.0023228	565.8088515647926	90.665	0.41035	88.585	88.413	88.823	-2.0805	0.019608	0.0024214	NaN	79.713	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84594			129	8158	101	101							0.03828789435215185
ADERIEKV	8	Unmodified	_ADERIEKV_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74592577-74593714:-|nuORF	nc|ENSG00000204843|Q14203-5|DCTN1;ENST00000466110.5_1_2:74592577-74593714:-|nuORF	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	OvCa99_classI_Rep5	1	480.2633056640625	2	480.261456	958.50836	-0.21022	-0.00010096	0.69359	0.0003331	0.48337	0.00023214	480.2616017396813	73.204	0.75568	73.204	72.842	73.597	0					49	18	4	0	0	0	0.65267	1	7194	7194		52.937	1.6012	1	3412500			130	9031;12283	102	102	142	142					0.02744579546526893
ADETADHGL	9	Unmodified	_ADETADHGL_					0	0	0			REV__nc|ENSG00000005189|Q96IC2-2|REXO5	REV__nc|ENSG00000005189|Q96IC2-2|REXO5	MULTI-MSMS	OvCa99_classI_Rep5	1	464.7046203613281	2	464.703971	927.393389	-0.30336	-0.00014097	0.35981	0.00016721	0.056448	2.6232E-05	464.70401701505693	41.266	0.57838	41.266	41.059	41.637	0					27	12	3	0	0	0	0.36502	1	2563	2563		55.504	0.72789	1	367220	+		131	16395	103	103	143	143					-0.07321149655274439
ADFANGGND	9	Unmodified	_ADFANGGND_					0	0	0			REV__tr|A0A553SJZ9|A0A553SJZ9_NIACIGlutathionehydrolaseproenzymeOS=NialliacirculansOX=1397GN=ggtPE=3SV=1	REV__tr|A0A553SJZ9|A0A553SJZ9_NIACIGlutathionehydrolaseproenzymeOS=NialliacirculansOX=1397GN=ggtPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	440.6741943359375	2	440.675214	879.335875	0.55126	0.00024293	-2.1569	-0.00095049	-1.6056	-0.00070756	440.674097425297	109.91	1.3163	108.31	108.02	109.33	-1.6011					54	24	3	0	0	0	0.5811	1	10103	10103		34.173	5.023	1	159190	+		132	30061	104	104	144	144					-0.10861991860838316
ADFANGGND	9	Unmodified	_ADFANGGND_					0	0	0			REV__tr|A0A553SJZ9|A0A553SJZ9_NIACIGlutathionehydrolaseproenzymeOS=NialliacirculansOX=1397GN=ggtPE=3SV=1	REV__tr|A0A553SJZ9|A0A553SJZ9_NIACIGlutathionehydrolaseproenzymeOS=NialliacirculansOX=1397GN=ggtPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	440.675214	879.335875	1.3287	0.00058553	-2.9547	-0.0013021	-1.626	-0.00071654	440.6737999571189	108.53	1.3854	108.3	107.68	109.06	-0.22498	0.044881	-0.00047158	NaN	34.173	50	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48619	+		133	30061	104	104							-0.10861991860838316
ADFANGGND	9	Unmodified	_ADFANGGND_					0	0	0			REV__tr|A0A553SJZ9|A0A553SJZ9_NIACIGlutathionehydrolaseproenzymeOS=NialliacirculansOX=1397GN=ggtPE=3SV=1	REV__tr|A0A553SJZ9|A0A553SJZ9_NIACIGlutathionehydrolaseproenzymeOS=NialliacirculansOX=1397GN=ggtPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	440.675214	879.335875	0.16254	7.1629E-05	-1.9528	-0.00086053	-1.7902	-0.0007889	440.6742261404938	109.31	1.3664	108.17	107.88	109.24	-1.1444	-0.092286	0.00041149	NaN	34.173	48	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138990	+		134	30061	104	104							-0.10861991860838316
ADFANGGND	9	Unmodified	_ADFANGGND_					0	0	0			REV__tr|A0A553SJZ9|A0A553SJZ9_NIACIGlutathionehydrolaseproenzymeOS=NialliacirculansOX=1397GN=ggtPE=3SV=1	REV__tr|A0A553SJZ9|A0A553SJZ9_NIACIGlutathionehydrolaseproenzymeOS=NialliacirculansOX=1397GN=ggtPE=3SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	440.675214	879.335875	0.55126	0.00024293	-2.1569	-0.00095049	-1.6056	-0.00070756	440.674097425297	109.91	1.3163	108.31	108.02	109.33	-1.6011	0.047404	0.00023158	NaN	34.173	54	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159190	+		135	30061	104	104							-0.10861991860838316
ADGALSLR	8	Unmodified	_ADGALSLR_					0	0	0			REV__ENST00000369096.8_1_6:106534283-106534403:+|nuORF	REV__ENST00000369096.8_1_6:106534283-106534403:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.8877258300781	2	401.72451	801.434466	0.73648	0.00029586	4.3562	0.00175	5.0927	0.0020459	401.7262457146441	43.427	0.55387	43.427	43.27	43.823	0					19	12	2	0	0	0	0.028476	1	2910	2910		37.159	0	1	259160	+		136	24933	105	105	145	145					0.025806561748595414
ADGEMRTRA	9	Unmodified	_ADGEMRTRA_					0	0	0		tr|A0A7D6VT41|A0A7D6VT41_9CLOTSporulationproteinYunBOS=ClostridiumintestinaleOX=36845GN=yunBPE=4SV=1	tr|A0A7D6VT41|A0A7D6VT41_9CLOTSporulationproteinYunBOS=ClostridiumintestinaleOX=36845GN=yunBPE=4SV=1	tr|A0A7D6VT41|A0A7D6VT41_9CLOTSporulationproteinYunBOS=ClostridiumintestinaleOX=36845GN=yunBPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.7637634277344	2	503.740365	1005.46618	0.66141	0.00033318	4.3912	0.002212	5.0526	0.0025452	503.7421095497946	101.57	1.2725	101.57	101.06	102.34	0					45	29	2	0	0	0	0.027448	1	11318	11318		27.882	0	1	173690			137	35085	106	106	146	146					-0.036337191335064745
ADGHFHLID	9	Unmodified	_ADGHFHLID_					0	0	0		ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3	ENSG00000013375|ENST00000513973|PGM3	ENSG00000013375|ENST00000513973|PGM3	MULTI-SECPEP	OvCa9_classI_Rep3	3	512.2800903320312	2	512.745973	1023.47739	1.7283	0.00088619	2.311	0.001185	4.0394	0.0020712	512.7469201968353	112.86	0.83671	111.78	111.17	112.01	-1.0753					24	16	2	0	0	0	0.027462	1	8280	8280		21.96	0	1	16807			138	985	107	107	147	147					-0.033405737677071556
ADGIHLLVGL	10	Unmodified	_ADGIHLLVGL_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	OvCa9_classI_Rep2	2	504.2969055175781	2	504.297842	1006.58113	-1.2162	-0.00061332	0.82605	0.00041658	-0.39013	-0.00019674	504.29821756982153	103.35	3.6196	102.66	102.28	105.9	-0.68459					195	72	4	0	0	0	0.58282	1	9583	9583		44.117	6.9577	1	812500			139	3125	108	108	148	148					0.07810333339955378
ADGIHLLVGL	10	Unmodified	_ADGIHLLVGL_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	OvCa9_classI_Rep3	3	504.29833984375	2	504.297842	1006.58113	-0.082287	-4.1497E-05	-0.36053	-0.00018182	-0.44282	-0.00022331	504.2976378271559	104.41	3.9037	102.97	102.5	106.4	-1.4347					184	75	5	0	0	0	0.53885	1	7292	7292		49.442	5.3247	1	927760			140	3125	108	108	149	149					0.07810333339955378
ADGIHLLVGL	10	Unmodified	_ADGIHLLVGL_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.2977600097656	2	504.297842	1006.58113	-0.73292	-0.00036961	0.18901	9.5318E-05	-0.5439	-0.00027429	504.2978909366257	105.14	3.2976	103.13	102.58	105.88	-2.0161					166	64	4	0	0	0	0.50656	1	9544	9544		53.351	5.4358	1	823080			141	3125	108	108	150	150					0.07810333339955378
ADGIKSFL	8	Unmodified	_ADGIKSFL_					0	0	0		ENSG00000105647|ENST00000222254|PIK3R2	ENSG00000105647|ENST00000222254|PIK3R2	ENSG00000105647|ENST00000222254|PIK3R2	MULTI-MSMS	OvCa9_classI_Rep4_	4	425.7380065917969	2	425.737086	849.459619	1.0285	0.00043788	-0.8692	-0.00037005	0.15933	6.7832E-05	425.7366052806573	96.621	1.6646	94.195	93.913	95.577	-2.4256					79	32	4	0	0	0	0.48084	1	8586	8586		79.451	2.6769	1	775360			142	2481	109	109	151	151					0.028867109774296296
ADGLHSEF	8	Unmodified	_ADGLHSEF_					0	0	0		nc|ENSG00000136141|Q9Y2L9-2|LRCH1;nc|ENSG00000136141|Q9Y2L9|LRCH1;ENSG00000136141|ENST00000389797|LRCH1;LRCH1|p.E457Vfs*53|1|0.03|ENSG00000136141|chr13:46701176-46701177|-/T|frameshift_variant;ENST00000443945.6_1_13:47127426-47279607:+|nuORF	nc|ENSG00000136141|Q9Y2L9-2|LRCH1	nc|ENSG00000136141|Q9Y2L9-2|LRCH1	MULTI-MSMS	OvCa99_classI_Rep5	1	438.19873046875	2	438.198325	874.382096	1.1298	0.00049506	-0.84654	-0.00037095	0.28323	0.00012411	438.1978394809023	46.363	1.0971	46.363	46.154	47.251	0					41	24	3	0	0	0	0.62934	1	3270	3270		57.811	5.5121	1	1119300			143	4460	110	110	152	152					-0.06011926958751701
ADGRPTLYI	9	Unmodified	_ADGRPTLYI_					0	0	0		ENSG00000151458|ENST00000504087|ANKRD50;nc|ENSG00000151458|Q9ULJ7-2|ANKRD50	ENSG00000151458|ENST00000504087|ANKRD50	ENSG00000151458|ENST00000504087|ANKRD50	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.26300048828125	2	503.271824	1004.5291	1.7443	0.00087787	-0.0018619	-9.3706E-07	1.7425	0.00087693	503.2713879080423	78.766	0.49824	78.766	78.457	78.955	0					19	11	2	0	0	0	0.027462	1	7978	7978		16.473	0	1	411990			144	5552	111	111	153	153					0.027011699261720423
ADGRWCEW	8	Unmodified	_ADGRWCEW_					0	0	0		nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.2264099121094	2	511.711076	1021.4076	-0.62264	-0.00031861	0.46427	0.00023757	-0.15837	-8.1038E-05	511.71150579847966	37.737	0.13869	37.737	37.668	37.806	0					4	2	2	0	0	0	0.028476	1	2098	2098		31.955	0	1	29097			145	15250	112	112	154	154					-0.1022477570799083
ADGSGQLRLPE	11	Unmodified	_ADGSGQLRLPE_					0	0	0		ENST00000240139.9_1_8:22298692-22298875:+|nuORF	ENST00000240139.9_1_8:22298692-22298875:+|nuORF	ENST00000240139.9_1_8:22298692-22298875:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.8311157226562	2	571.793652	1141.57275	0.040599	2.3214E-05	-1.2696	-0.00072597	-1.229	-0.00070276	571.7922343595146	57.399	0.42916	57.399	57.221	57.65	0					15	9	2	0	0	0	0.025406	1	4814	4814		46.457	0	1	478640			146	9758	113	113	155	155					0.00762734632644424
ADGTIYRE	8	Unmodified	_ADGTIYRE_					0	0	0			REV__tr|A0A553STS1|A0A553STS1_NIACIUronateisomeraseOS=NialliacirculansOX=1397GN=uxaCPE=3SV=1	REV__tr|A0A553STS1|A0A553STS1_NIACIUronateisomeraseOS=NialliacirculansOX=1397GN=uxaCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.7239685058594	2	462.724707	923.43486	-1.0622	-0.00049153	1.009	0.00046687	-0.053298	-2.4662E-05	462.72500988599785	51.271	1.4091	48.098	47.821	49.23	-3.1734					63	27	4	0	0	0	0.36941	1	2996	2996		94.006	3.2298	1	382200	+		147	31004	114	114	156	156					-0.02991968895946684
ADGTIYRE	8	Unmodified	_ADGTIYRE_					0	0	0			REV__tr|A0A553STS1|A0A553STS1_NIACIUronateisomeraseOS=NialliacirculansOX=1397GN=uxaCPE=3SV=1	REV__tr|A0A553STS1|A0A553STS1_NIACIUronateisomeraseOS=NialliacirculansOX=1397GN=uxaCPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	462.724707	923.43486	-1.3359	-0.00061817	1.0417	0.00048204	-0.29419	-0.00013613	462.72513011167035	51.141	0.9415	48.347	48.074	49.015	-2.794	0.12445	8.1858E-06	NaN	94.006	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60999	+		148	31004	114	114							-0.02991968895946684
ADGTIYRE	8	Unmodified	_ADGTIYRE_					0	0	0			REV__tr|A0A553STS1|A0A553STS1_NIACIUronateisomeraseOS=NialliacirculansOX=1397GN=uxaCPE=3SV=1	REV__tr|A0A553STS1|A0A553STS1_NIACIUronateisomeraseOS=NialliacirculansOX=1397GN=uxaCPE=3SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	462.724707	923.43486	-1.0622	-0.00049153	1.009	0.00046687	-0.053298	-2.4662E-05	462.72500988599785	51.271	1.4091	48.098	47.821	49.23	-3.1734	-0.12445	-2.2165E-05	NaN	94.006	63	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	382200	+		149	31004	114	114							-0.02991968895946684
ADGTVRSLV	9	Unmodified	_ADGTVRSLV_					0	0	0		nc|ENSG00000104936|Q09013-12|DMPK;nc|ENSG00000104936|Q09013-10|DMPK;nc|ENSG00000104936|Q09013-2|DMPK;nc|ENSG00000104936|Q09013-8|DMPK;ENST00000596686.5_1_19:46273741-46282867:-|nuORF;nc|ENSG00000104936|Q09013-7|DMPK;nc|ENSG00000104936|Q09013-11|DMPK;nc|ENSG00000104936|Q09013-15|DMPK;ENSG00000104936|ENST00000291270|DMPK;nc|ENSG00000104936|Q09013-16|DMPK;nc|ENSG00000104936|Q09013-6|DMPK;nc|ENSG00000104936|Q09013-1|DMPK	nc|ENSG00000104936|Q09013-12|DMPK	nc|ENSG00000104936|Q09013-12|DMPK	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.7725524902344	2	459.256174	916.497795	0.76627	0.00035191	-0.6126	-0.00028134	0.15367	7.0573E-05	459.2557993085736	66.901	0.75255	66.901	66.619	67.371	0					36	18	3	0	0	0	0.027441	1	6229	6229		40.778	0	1	1101400			150	2408	115	115	157	157					0.03620596892108097
ADGTWGHCL	9	Unmodified	_ADGTWGHCL_					0	0	0			REV__ENST00000424202.6_2_12:102869473-102872313:-|nuORF	REV__ENST00000424202.6_2_12:102869473-102872313:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.8067932128906	2	480.205627	958.396701	-0.084036	-4.0355E-05	1.2694	0.00060957	1.1854	0.00056922	480.20627592743244	56.272	0.30079	52.977	52.87	53.171	-3.2944					7	5	2	0	0	0	0.027449	1	3583	3583		31.955	0	1	12052	+		151	25640	116	116	158	158					-0.0841617808225692
ADGYEVENLI	10	Unmodified	_ADGYEVENLI_					0	0	0		UBOX5|p.A400Lfs*4|1|0.05|ENSG00000185019|chr20:3121441-3121441|C/-|frameshift_variant;nc|ENSG00000185019|O94941-2|UBOX5;ENSG00000185019|ENST00000217173|UBOX5	UBOX5|p.A400Lfs*4|1|0.05|ENSG00000185019|chr20:3121441-3121441|C/-|frameshift_variant	UBOX5|p.A400Lfs*4|1|0.05|ENSG00000185019|chr20:3121441-3121441|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.318359375	2	561.769311	1121.52407	0.73109	0.0004107	0.64145	0.00036035	1.3725	0.00077105	562.271400531853	66.71	0.52637	66.71	66.372	66.898	0					19	12	2	0	0	0	0.026674	1	6156	6156		40.058	0	1	560980			152	8214	117	117	159	159					-0.03183178727090308
ADHLTCLLS	9	Unmodified	_ADHLTCLLS_					0	0	0		ENSG00000151640|ENST00000338492|DPYSL4	ENSG00000151640|ENST00000338492|DPYSL4	ENSG00000151640|ENST00000338492|DPYSL4	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.2989196777344	2	486.744585	971.474617	-0.24777	-0.0001206	-2.4387	-0.001187	-2.6864	-0.0013076	486.7430438383351	64.261	0.63266	61.536	61.337	61.97	-2.7245					17	11	2	0	0	0	0.027462	1	4879	4879		29.15	4.9468	1	21066			153	5571	118	118	160	160					-0.012261652168717774
ADIAAQWSL	9	Unmodified	_ADIAAQWSL_					0	0	0			REV__CACNA1D-DNAH1|1|fusion;REV__CACNA1D|p.Q1955Pfs*19|1|0.09|ENSG00000157388|chr3:53808762-53808763|-/CTCCTCCTTCAGAGAGTGTTGTGCAG|frameshift_variant	REV__CACNA1D-DNAH1|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.27374267578125	2	487.750724	973.486896	-0.6222	-0.00030348	-3.8329	-0.0018695	-4.4551	-0.002173	487.7487489387812	61.763	0.49365	61.763	61.501	61.994	0					20	11	2	0	0	0	0.027461	1	5430	5430		32.812	0	1	1185500	+		154	15726;15727	119	119	161	161					-0.0009080548219344564
ADIFKGILE	9	Unmodified	_ADIFKGILE_					0	0	0		tr|A0A553SS01|A0A553SS01_NIACIThuA-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01995PE=4SV=1	tr|A0A553SS01|A0A553SS01_NIACIThuA-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01995PE=4SV=1	tr|A0A553SS01|A0A553SS01_NIACIThuA-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01995PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	503.2828369140625	2	503.2844	1004.55425	1.2036	0.00060574	-1.4142	-0.00071176	-0.21066	-0.00010602	503.2835348330118	112.57	2.3947	111.49	110.48	112.87	-1.0753					102	47	4	0	0	0	0.16264	1	8244	8244		82.75	13.904	1	395070			155	34319	120	120	162	162					0.05215224728760859
ADIGKHPK	8	Unmodified	_ADIGKHPK_					0	0	0			REV__tr|A0A7D6VTM1|A0A7D6VTM1_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08510PE=4SV=1	REV__tr|A0A7D6VTM1|A0A7D6VTM1_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08510PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	433.2491760253906	2	433.248152	864.481751	0.47012	0.00020368	-0.036261	-1.571E-05	0.43386	0.00018797	433.2479071902028	51.972	1.7086	48.798	48.072	49.781	-3.1734					101	33	5	0	0	0	0.62934	1	3087	3087		57.811	1.0902	1	504890	+		156	31614	121	121	163	163					0.04408935445837869
ADIGKHPK	8	Unmodified	_ADIGKHPK_					0	0	0			REV__tr|A0A7D6VTM1|A0A7D6VTM1_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08510PE=4SV=1	REV__tr|A0A7D6VTM1|A0A7D6VTM1_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08510PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	433.248152	864.481751	-1.2217	-0.00052928	3.0584	0.001325	1.8367	0.00079577	433.24931369655945	51.749	1.2879	48.936	48.403	49.691	-2.8129	0.068827	0.0024295	NaN	57.811	62	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100750	+		157	31614	121	121							0.04408935445837869
ADIKEVIDD	9	Unmodified	_ADIKEVIDD_					0	0	0			REV__ENSG00000152484|ENST00000282344|USP12	REV__ENSG00000152484|ENST00000282344|USP12	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.3077697753906	2	509.258579	1016.50261	-0.89399	-0.00045527	3.4548	0.0017594	2.5608	0.0013041	509.26023185614923	97.091	1.0796	95.324	94.683	95.763	-1.7668					64	20	4	0	0	0	0.027185	1	6456	6456		82.241	0	1	196330	+		158	20290	122	122	164	164					-0.00498563755820669
ADIRRQGGG	9	Unmodified	_ADIRRQGGG_					0	0	0			REV__ENSG00000114054|ENST00000251654|PCCB	REV__ENSG00000114054|ENST00000251654|PCCB	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.2522277832031	2	465.249215	928.483876	-0.15367	-7.1495E-05	4.3164	0.0020082	4.1627	0.0019367	465.25113265856197	57.714	1.1138	54.369	53.985	55.098	-3.3449					56	21	4	0	0	0	0.50149	1	3783	3783		42.396	5.237	1	803250	+		159	18176	123	123	165	165					0.016773641836721254
ADISIIMHTK	10	Unmodified	_ADISIIMHTK_					0	0	0			REV__L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|146|3|sense	REV__L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|146|3|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	564.8085327148438	2	564.807716	1127.60088	-0.6708	-0.00037887	-1.8948	-0.0010702	-2.5656	-0.0014491	564.8065459691159	99.395	2.9276	98.564	97.919	100.85	-0.83052					122	58	4	0	0	0	0.42298	1	9113	9113		65.157	6.3753	1	405350	+		160	28598	124	124	166	166					0.042183412884014615
ADISIIMHTK	10	Unmodified	_ADISIIMHTK_					0	0	0			REV__L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|146|3|sense	REV__L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|146|3|sense	MSMS	OvCa9_classI_Rep4_	4	564.810791015625	2	564.807716	1127.60088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101	1	98.734	98.234	99.234	-2.2665								0	0	0	0.10041	1	9050	9050		93.598	10.847	1		+		161	28598	124	124	167	167					0.042183412884014615
ADKRLSRLA	9	Unmodified	_ADKRLSRLA_					0	0	0			REV__ENST00000521903.5_1_8:124361561-124413087:-|nuORF	REV__ENST00000521903.5_1_8:124361561-124413087:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.3112182617188	2	515.311815	1028.60908	0.67052	0.00034553	-1.334	-0.00068741	-0.66345	-0.00034188	515.3111559710834	35.314	1.6978	32.465	32.19	33.887	-2.849					108	33	5	0	0	0	0.38969	1	1129	1129		52.937	3.4952	1	2437400	+		162	20495	125	125	168	168					0.09591656320048969
ADKVAQRLK	9	Unmodified	_ADKVAQRLK_					0	0	0			REV__NOC3L|p.L294Ffs*8|1|0.05|ENSG00000173145|chr10:94352380-94352381|-/CATATCTACA|frameshift_variant	REV__NOC3L|p.L294Ffs*8|1|0.05|ENSG00000173145|chr10:94352380-94352381|-/CATATCTACA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	514.7984008789062	2	514.81419	1027.61383	0.22051	0.00011352	3.2062	0.0016506	3.4267	0.0017641	514.8155179942008	118.33	1.0904	117.3	116.98	118.07	-1.0324					39	21	3	0	0	0	0.027462	1	8899	8899		9.7057	3.393	1	150620	+		163	21750	126	126	169	169					0.1011254046279646
ADKVAQRLK	9	Unmodified	_ADKVAQRLK_					0	0	0			REV__NOC3L|p.L294Ffs*8|1|0.05|ENSG00000173145|chr10:94352380-94352381|-/CATATCTACA|frameshift_variant	REV__NOC3L|p.L294Ffs*8|1|0.05|ENSG00000173145|chr10:94352380-94352381|-/CATATCTACA|frameshift_variant	MULTI-MATCH	OvCa99_classI_Rep5	1		2	514.81419	1027.61383	1.5144	0.00077962	4.4932	0.0023132	6.0076	0.0030928	514.81646147796	116.79	0.72543	116.79	116.64	117.37	0	-0.3132	0.00028827	NaN	2.5243	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	266830	+		164	21750	126	126							0.1011254046279646
ADKVKTALL	9	Unmodified	_ADKVKTALL_					0	0	0		nc|ENSG00000152969|Q96N16|JAKMIP1;ENSG00000152969|ENST00000409021|JAKMIP1;nc|ENSG00000152969|Q96N16-3|JAKMIP1;JAKMIP1|p.R424Sfs*9|1|0.04|ENSG00000152969|chr4:6078969-6078970|-/GAATA|frameshift_variant;nc|ENSG00000152969|Q96N16-4|JAKMIP1	nc|ENSG00000152969|Q96N16|JAKMIP1	nc|ENSG00000152969|Q96N16|JAKMIP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.801513671875	2	479.800217	957.585882	0.6793	0.00032593	-0.75053	-0.0003601	-0.071227	-3.4175E-05	479.79971261114326	97.623	1.3666	95.245	95.013	96.38	-2.3786					56	26	3	0	0	0	0.42676	1	8682	8682		49.442	1.7842	1	285700			165	5652	127	127	170	170					0.1053921748269886
ADKVKTALL	9	Unmodified	_ADKVKTALL_					0	0	0		nc|ENSG00000152969|Q96N16|JAKMIP1;ENSG00000152969|ENST00000409021|JAKMIP1;nc|ENSG00000152969|Q96N16-3|JAKMIP1;JAKMIP1|p.R424Sfs*9|1|0.04|ENSG00000152969|chr4:6078969-6078970|-/GAATA|frameshift_variant;nc|ENSG00000152969|Q96N16-4|JAKMIP1	nc|ENSG00000152969|Q96N16|JAKMIP1	nc|ENSG00000152969|Q96N16|JAKMIP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.78863525390625	2	479.800217	957.585882	0.20279	9.7298E-05	0.60475	0.00029016	0.80754	0.00038746	479.80145292690736	78.581	0.18523	75.83	75.714	75.899	-2.7514					5	3	2	0	0	0	0.027461	1	6344	6344		32.812	7.3622	1	39847			166	5652	127	127	171	171					0.1053921748269886
ADLGEMILLL	10	Unmodified	_ADLGEMILLL_					0	0	0		ENSG00000244067|ENST00000493422|GSTA2;ENSG00000243955|ENST00000334575|GSTA1	ENSG00000244067|ENST00000493422|GSTA2	ENSG00000244067|ENST00000493422|GSTA2	MULTI-SECPEP	OvCa9_classI_Rep2	2	544.8198852539062	2	544.307018	1086.59948	1.3718	0.00074667	4.1355	0.002251	5.5073	0.0029977	544.3090982790133	88.136	1.1803	86.769	86.495	87.675	-1.3676					48	23	3	0	0	0	0.026688	1	7807	7807		40.778	0	1	262560			167	9386	128	128	172	172					0.05964707199655095
ADLKKLPLE	9	Unmodified	_ADLKKLPLE_					0	0	0		ENSG00000133422|ENST00000397641|MORC2;MORC2|p.S686Afs*42|1|0.12|ENSG00000133422|chr22:30934896-30934918|TGCACCAGAGGGGCAGGTCGGGA/-|frameshift_variant;nc|ENSG00000133422|Q9Y6X9-2|MORC2	ENSG00000133422|ENST00000397641|MORC2	ENSG00000133422|ENST00000397641|MORC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.8168334960938	2	513.813325	1025.6121	-0.22749	-0.00011689	3.8065	0.0019558	3.579	0.0018389	513.8151298922651	75.964	2.6418	73.025	72.401	75.043	-2.9389					148	54	4	0	0	0	0.53483	1	6070	6070		39.253	0	1	2672000			168	4220	129	129	173	173					0.10031486654202126
ADLLWILL	8	Unmodified	_ADLLWILL_					0	0	0			REV__ENSG00000197136|ENST00000355703|PCNX3	REV__ENSG00000197136|ENST00000355703|PCNX3	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.2989807128906	2	478.794404	955.574254	-1.3956	-0.00066819	-2.2915	-0.0010971	-3.687	-0.0017653	478.79320369166174	52.248	0.59286	49.435	49.246	49.839	-2.8129					17	11	2	0	0	0	0.028476	1	3460	3460		44.531	0	1	45103	+		169	22895	130	130	174	174					0.09469020459391686
ADLRWLKL	8	Unmodified	_ADLRWLKL_					0	0	0		ENST00000468157.5_1_6:33255793-33256956:-|nuORF	ENST00000468157.5_1_6:33255793-33256956:-|nuORF	ENST00000468157.5_1_6:33255793-33256956:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.7838439941406	2	507.808377	1013.6022	-1.0907	-0.00055387	4.2135	0.0021397	3.1228	0.0015858	507.81026573828865	81.756	0.57877	79.073	78.767	79.346	-2.6829					31	11	3	0	0	0	0.028476	1	6759	6759		71.296	15.791	1	212520			170	12323	131	131	175	175					0.09594343439448494
ADMRLALLL	9	Unmodified	_ADMRLALLL_					0	0	0		tr|A0A553SH09|A0A553SH09_NIACITeichuronicacidbiosynthesisproteinTuaEOS=NialliacirculansOX=1397GN=CEQ21_11935PE=4SV=1	tr|A0A553SH09|A0A553SH09_NIACITeichuronicacidbiosynthesisproteinTuaEOS=NialliacirculansOX=1397GN=CEQ21_11935PE=4SV=1	tr|A0A553SH09|A0A553SH09_NIACITeichuronicacidbiosynthesisproteinTuaEOS=NialliacirculansOX=1397GN=CEQ21_11935PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	508.3027648925781	2	508.30207	1014.58959	-1.2021	-0.00061101	0.25996	0.00013214	-0.9421	-0.00047887	508.30219341276	91.129	3.5554	89.105	88.52	92.076	-2.0241					114	71	2	0	0	0	0.38529	1	5664	5664		53.351	2.016	1	1119200			171	33217	132	132	176	176					0.08287563984913504
ADNQGLTIGIL	11	Unmodified	_ADNQGLTIGIL_					0	0	0		ENSG00000148848|ENST00000448723|ADAM12;nc|ENSG00000148848|O43184|ADAM12	ENSG00000148848|ENST00000448723|ADAM12	ENSG00000148848|ENST00000448723|ADAM12	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.8113403320312	2	557.808771	1113.60299	-0.44839	-0.00025011	4.1017	0.0022879	3.6533	0.0020378	557.8109927845255	146.06	1.578	144.62	144.25	145.82	-1.4357					89	30	5	0	0	0	0.41656	1	14374	14374		59.931	5.1545	1	878120			172	5430	133	133	177	177					0.05073093297869491
ADPAGRLCP	9	Unmodified	_ADPAGRLCP_					0	0	0		ENST00000468365.1_1_1:1178822-1179616:-|nuORF	ENST00000468365.1_1_1:1178822-1179616:-|nuORF	ENST00000468365.1_1_1:1178822-1179616:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.22528076171875	2	450.22382	898.433086	0.46165	0.00020785	0.60493	0.00027235	1.0666	0.0004802	450.2240094327952	98.62	1.9451	96.242	95.921	97.866	-2.3786					76	37	3	0	0	0	0.53957	1	8775	8775		38.806	3.1879	1	455830			173	12328	134	134	178	178					-0.020193011855667464
ADQPHRFNV	9	Unmodified	_ADQPHRFNV_					0	0	0			REV__ENSG00000259956|ENST00000563281|RBM15B	REV__ENSG00000259956|ENST00000563281|RBM15B	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.7854614257812	2	542.270147	1082.52574	-0.33881	-0.00018373	-0.52011	-0.00028204	-0.85893	-0.00046577	542.2696984562323	90.728	0.41035	88.647	88.413	88.823	-2.0805					16	7	3	0	0	0	0.027461	1	5669	5669		40.778	0	1	20705	+		174	23557	135	135	179	179					-0.012220801278090221
ADQRIRPV	8	Unmodified	_ADQRIRPV_					0	0	0			REV__ENST00000492538.1_1_22:23412760-23437660:+|nuORF	REV__ENST00000492538.1_1_22:23412760-23437660:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.7787170410156	2	477.777608	953.540663	-0.82611	-0.0003947	0.0037772	1.8047E-06	-0.82233	-0.00039289	477.7776089014007	43.823	3.0314	40.816	40.483	43.515	-3.0074					146	58	4	0	0	0	0.61758	1	2197	2197		60.294	8.9585	1	12741000	+		175	26692	136	136	180	180					0.0620341174017085
ADRATYLR	8	Unmodified	_ADRATYLR_					0	0	0			REV__ENST00000591149.5_1_19:2807001-2808381:+|nuORF	REV__ENST00000591149.5_1_19:2807001-2808381:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	483.26177978515625	2	483.261791	964.509028	-0.28533	-0.00013789	-0.70389	-0.00034016	-0.98922	-0.00047805	483.26113821880995	29.76	0.49991	29.76	29.486	29.986	0					19	9	3	0	0	0	0.72896	1	1094	1094		37.159	6.6555	1	249720	+		176	21667	137	137	181	181					0.02535418986235527
ADRLCQLFN	9	Unmodified	_ADRLCQLFN_					0	0	0			REV__ENST00000368037.9_1_1:160797618-160797780:+|nuORF	REV__ENST00000368037.9_1_1:160797618-160797780:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.3295288085938	2	540.268758	1078.52296	1.7263	0.00093267	-1.6209	-0.00087573	0.10539	5.6941E-05	540.2684416446692	136.36	0.53555	134.82	134.6	135.13	-1.5437					14	10	2	0	0	0	0.027462	1	13253	13253		30.318	0	1	9569.6	+		177	24912	138	138	182	182					-0.013156715769810035
ADRSGSTDVSV	11	Unmodified	_ADRSGSTDVSV_					0	0	0		ENST00000502740.1_1_8:15664207-15664498:-|nuORF	ENST00000502740.1_1_8:15664207-15664498:-|nuORF	ENST00000502740.1_1_8:15664207-15664498:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	547.2642211914062	2	547.259642	1092.50473	2.1789	0.0011924	4.2934	0.0023496	6.4723	0.003542	547.2619083889039	91.774	0.84329	91.774	91.542	92.385	0					31	19	2	0	0	0	0.23673	1	9906	9906		75.043	6.2565	1	1684500			178	12854	139	139	183	183					-0.03782135017991095
ADSGMCCESDS	11	Unmodified	_ADSGMCCESDS_					0	0	0		ENSG00000174945|ENST00000683327|AMZ1	ENSG00000174945|ENST00000683327|AMZ1	ENSG00000174945|ENST00000683327|AMZ1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.8051147460938	2	552.667557	1103.32056	-0.92764	-0.00051268	2.0629	0.0011401	1.1353	0.00062742	552.6688418263792	42.192	0.29691	39.211	39.064	39.361	-2.9804					7	5	2	0	0	0	0.026339	1	1933	1933		15.642	0.77694	1	16832			179	7502	140	140	184	184					-0.22696730826874045
ADSMWHRK	8	Unmodified	_ADSMWHRK_					0	0	0		nc|ENSG00000179709|Q86W28-2|NLRP8;ENSG00000179709|ENST00000291971|NLRP8	nc|ENSG00000179709|Q86W28-2|NLRP8	nc|ENSG00000179709|Q86W28-2|NLRP8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.2810668945312	2	515.747993	1029.48143	1.0014	0.00051649	0.9209	0.00047495	1.9223	0.00099144	515.7482849029313	67.892	0.87788	64.402	64.136	65.014	-3.4902					30	17	3	0	0	0	0.028476	1	5075	5075		25.45	0	1	104560			180	7838	141	141	185	185					-0.03212807545673968
ADSRKRSLP	9	Unmodified	_ADSRKRSLP_					0	0	0		ENST00000297979.9_1_9:97849004-97849358:+|nuORF	ENST00000297979.9_1_9:97849004-97849358:+|nuORF	ENST00000297979.9_1_9:97849004-97849358:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	515.2933349609375	2	515.293622	1028.57269	-0.12853	-6.6231E-05	-1.2758	-0.0006574	-1.4043	-0.00072363	515.2930270331328	32.772	0.83178	32.772	32.503	33.335	0					67	16	5	0	0	0	0.46356	1	1468	1468		45.972	1.8554	1	13477000			181	10152	142	142	186	186					0.05954779423313994
ADTRSSITF	9	Unmodified	_ADTRSSITF_					0	0	0			REV__ENST00000463758.1_1_1:1244346-1244654:+|nuORF	REV__ENST00000463758.1_1_1:1244346-1244654:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.27166748046875	2	499.251089	996.487624	-0.71203	-0.00035548	1.6415	0.00081951	0.92944	0.00046402	499.25093655628734	89.297	0.39593	87.166	87.044	87.44	-2.1309					11	7	2	0	0	0	0.027137	1	5503	5503		90.37	10.919	1	8273.1	+		182	21502	143	143	187	187					-0.010760108331396623
ADTTYVEVMVN	11	Unmodified	_ADTTYVEVMVN_					0	0	0		nc|ENSG00000008300|Q9NYQ7-2|CELSR3;ENSG00000008300|ENST00000164024|CELSR3	nc|ENSG00000008300|Q9NYQ7-2|CELSR3	nc|ENSG00000008300|Q9NYQ7-2|CELSR3	MULTI-MSMS	OvCa99_classI_Rep5	1	621.2901611328125	2	621.289553	1240.56455	1.9885	0.0012354	-2.317	-0.0014395	-0.3285	-0.00020409	621.28815573853	107.48	4.1803	107.48	106.97	111.16	0					232	95	5	0	0	0	0.39136	1	12167	12167		44.377	0	1	27078000			183	916	144	144	188	188					-0.04610580398980346
ADVRGCFL	8	Unmodified	_ADVRGCFL_					0	0	0		ENST00000503766.5_1_6:43190510-43190918:+|nuORF	ENST00000503766.5_1_6:43190510-43190918:+|nuORF	ENST00000503766.5_1_6:43190510-43190918:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	440.72271728515625	2	440.720913	879.427273	4.0635	0.0017909	-0.59704	-0.00026313	3.4665	0.0015277	440.720523303343	99.056	1.0924	99.056	98.764	99.856	0					57	26	3	0	0	0	0.66704	1	10943	10943		50.025	0	1	14230000			184	12865	145	145	189	189					-0.017263996972246787
ADVTNIYTV	9	Unmodified	_ADVTNIYTV_					0	0	0			REV__tr|A0A7D6ZYI8|A0A7D6ZYI8_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02830PE=4SV=1	REV__tr|A0A7D6ZYI8|A0A7D6ZYI8_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02830PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	498.25830078125	2	498.25584	994.497126	0.70354	0.00035054	-0.55008	-0.00027408	0.15346	7.6463E-05	498.25547664067716	67.065	0.51421	67.065	66.857	67.371	0					29	12	3	0	0	0	0.28934	1	6254	6254		64.207	4.089	1	2295900	+		185	32376	146	146	190	190					-0.0003424254762194323
ADVVPNATI	9	Unmodified	_ADVVPNATI_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;ENST00000450651.5_1_22:21841260-21846319:-|nuORF;nc|ENSG00000290425|Q8N8J0|PI4KAP1;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;ENST00000467443.5_1_22:21831964-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2-4|PI4KAP2	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.2283630371094	2	450.245275	898.475997	0.66333	0.00029866	-0.60147	-0.00027081	0.061853	2.7849E-05	450.245008289262	71.914	0.37637	71.914	71.668	72.045	0					12	8	2	0	0	0	0.027453	1	6986	6986		30.318	4.7437	1	209630			186	9359	147	147	191	191					0.022697921435110402
ADYHGAQLL	9	Unmodified	_ADYHGAQLL_					0	0	0			REV__nc|ENSG00000160145|O60229|KALRN	REV__nc|ENSG00000160145|O60229|KALRN	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.2491149902344	2	494.248349	986.482145	1.2733	0.00062932	-1.3485	-0.0006665	-0.075241	-3.7188E-05	494.24752708817437	96.962	1.4081	94.536	94.22	95.628	-2.4256					74	27	4	0	0	0	0.51865	1	8592	8592		40.778	3.6191	1	607260	+		187	20640	148	148	192	192					-0.011636896249456186
AEAALSHL	8	Unmodified	_AEAALSHL_					0	0	0			REV__ENSG00000168813|ENST00000355898|ZNF507	REV__ENSG00000168813|ENST00000355898|ZNF507	MULTI-SECPEP	OvCa9_classI_Rep4_	4	406.2334289550781	2	406.21906	810.423567	1.586	0.00064426	-1.519	-0.00061706	0.066961	2.7201E-05	406.2183143163425	56.781	1.728	53.436	53.171	54.899	-3.3449					63	33	3	0	0	0	0.028476	1	3754	3754		42.474	1.9018	1	221680	+		188	21408	149	149	193	193					0.0107725380055399
AEAARAKKNK	10	Unmodified	_AEAARAKKNK_					0	0	0			REV__CDK13-POU6F2|2|fusion	REV__CDK13-POU6F2|2|fusion	MULTI-SECPEP	OvCa9_classI_Rep3	3	544.3009033203125	2	543.822547	1085.63054	1.1466	0.00062357	2.73	0.0014846	3.8766	0.0021082	543.8238635876636	66.098	0.86411	63.152	62.806	63.67	-2.9459					24	16	2	0	0	0	0.027028	1	2721	2721		39.253	8.7492	1	19229	+		189	15771	150	150	194	194					0.09115041348741215
AEAEERGEL	9	Unmodified	_AEAEERGEL_					0	0	0		ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENST00000552322.5_1_12:52638288-52642544:+|nuORF;DTX4-KRT7|1|fusion	ENSG00000135480|ENST00000331817|KRT7;DTX4-KRT7|1|fusion	ENSG00000135480|ENST00000331817|KRT7	MULTI-MSMS	OvCa9_classI_Rep2	2	502.23779296875	2	502.238178	1002.4618	-0.89962	-0.00045182	0.54755	0.000275	-0.35208	-0.00017683	502.238318170929	46.08	1.4407	43.37	43.048	44.489	-2.7097					59	28	5	0	0	0	0.18887	2	2723	2718;2723		78.264	6.9681	1	328560		+	190	646;764	151	151	195;196	196					-0.03932905075407689
AEAEERGEL	9	Unmodified	_AEAEERGEL_					0	0	0		ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENST00000552322.5_1_12:52638288-52642544:+|nuORF;DTX4-KRT7|1|fusion	ENSG00000135480|ENST00000331817|KRT7;DTX4-KRT7|1|fusion	ENSG00000135480|ENST00000331817|KRT7	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.2392272949219	2	502.238178	1002.4618	-1.265	-0.00063536	0.86712	0.0004355	-0.39793	-0.00019985	502.23856738863066	45.994	1.7055	42.922	42.666	44.371	-3.0724					89	32	5	0	0	0	0.036986	2	2391	2379;2391		129.42	18.948	1	918230		+	191	646;764	151	151	197;198	198					-0.03932905075407689
AEAEERGELAL	11	Unmodified	_AEAEERGELAL_					0	0	0		ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENST00000552322.5_1_12:52638288-52642544:+|nuORF;DTX4-KRT7|1|fusion	ENSG00000135480|ENST00000331817|KRT7;DTX4-KRT7|1|fusion	ENSG00000135480|ENST00000331817|KRT7	MULTI-MSMS	OvCa9_classI_Rep2	2	594.2987670898438	2	594.298767	1186.58298	-1.0714	-0.00063671	0.49601	0.00029478	-0.57535	-0.00034193	594.299039734462	75.518	2.2821	73.664	72.913	75.195	-1.854					147	43	5	0	0	0	0.14856	6	6184	6184;6190;6203;6209;6234;6241		86.882	15.534	1	1939700		+	192	646;764	152	152	199;200;201;202;203;204	199					-0.0028470243273659435
AEAEERGELAL	11	Unmodified	_AEAEERGELAL_					0	0	0		ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENST00000552322.5_1_12:52638288-52642544:+|nuORF;DTX4-KRT7|1|fusion	ENSG00000135480|ENST00000331817|KRT7;DTX4-KRT7|1|fusion	ENSG00000135480|ENST00000331817|KRT7	MULTI-MSMS	OvCa9_classI_Rep4_	4	594.3001098632812	2	594.298767	1186.58298	0.16637	9.8874E-05	-0.86787	-0.00051578	-0.7015	-0.0004169	594.2982637247995	76.399	2.3505	73.46	73.033	75.383	-2.9389					154	48	6	0	0	0	0.064268	5	6046	6046;6068;6080;6093;6106		106.88	18.703	1	7818100		+	193	646;764	152	152	205;206;207;208;209	205					-0.0028470243273659435
AEAEGVEWL	9	Unmodified	_AEAEGVEWL_					0	0	0			REV__SPTBN2|p.R1805Qfs*108|1|0.25|ENSG00000173898|chr11:66691414-66691435|TGGCGTGCCCCGTGCAGGAAGC/-|frameshift_variant	REV__SPTBN2|p.R1805Qfs*108|1|0.25|ENSG00000173898|chr11:66691414-66691435|TGGCGTGCCCCGTGCAGGAAGC/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	502.2377014160156	2	502.24019	1002.46583	-0.89962	-0.00045182	-3.4573	-0.0017364	-4.3569	-0.0021882	502.238318170929	46.08	1.4407	43.37	43.048	44.489	-2.7097					59	28	5	0	0	0	0.31747	1	2730	2730		60.972	4.5381	1	328560	+		194	21807	153	153	210	210					-0.03530815581711977
AEAEGVEWL	9	Unmodified	_AEAEGVEWL_					0	0	0			REV__SPTBN2|p.R1805Qfs*108|1|0.25|ENSG00000173898|chr11:66691414-66691435|TGGCGTGCCCCGTGCAGGAAGC/-|frameshift_variant	REV__SPTBN2|p.R1805Qfs*108|1|0.25|ENSG00000173898|chr11:66691414-66691435|TGGCGTGCCCCGTGCAGGAAGC/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.2380676269531	2	502.24019	1002.46583	-1.265	-0.00063536	-3.1377	-0.0015759	-4.4027	-0.0022112	502.23856738863066	45.994	1.7055	42.922	42.666	44.371	-3.0724					89	32	5	0	0	0	0.079296	1	2415	2415		102.77	1.1726	1	918230	+		195	21807	153	153	211	211					-0.03530815581711977
AEAEKKVQL	9	Unmodified	_AEAEKKVQL_					0	0	0		ENSG00000144747|ENST00000398559|TMF1;nc|ENSG00000144747|P82094-2|TMF1	ENSG00000144747|ENST00000398559|TMF1	ENSG00000144747|ENST00000398559|TMF1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.291748046875	2	508.292756	1014.57096	-0.37763	-0.00019195	0.090322	4.591E-05	-0.28731	-0.00014604	508.29274164802956	38.95	0.83905	38.95	38.75	39.589	0					33	18	4	0	0	0	0.14855	1	2256	2256		85.161	15.533	1	1789200			196	5180	154	154	212	212					0.06425725614712974
AEAEKVLAL	9	Unmodified	_AEAEKVLAL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.2774353027344	2	472.276575	942.538597	1.9894	0.00093956	-3.1928	-0.0015079	-1.2034	-0.00056833	472.27494541106154	86.348	1.6386	83.714	83.256	84.895	-2.6334					75	32	4	0	0	0	0.13326	1	7304	7304		88.177	15.298	1	972950			197	7740	155	155	213	213					0.06502938211713172
AEAEKVLAL	9	Unmodified	_AEAEKVLAL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	472.276575	942.538597	-1.6702	-0.00078878	1.0716	0.00050608	-0.59858	-0.0002827	472.27695122025665	85.276	2.3741	83.785	83.209	85.583	-1.4906	0.03527	0.0002687	NaN	88.177	96	46	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	441980			198	7740	155	155							0.06502938211713172
AEAGAEARL	9	Unmodified	_AEAGAEARL_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB;ENST00000525051.5_1_8:144874301-144875226:-|nuORF	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MSMS	OvCa99_classI_Rep5	1	444.23388671875	2	444.232699	886.450845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.995	1	45.995	45.495	46.495	0								0	0	0	0.11682	1	3218	3218		68.846	5.8677	1				199	7896	156	156	214	214					0.003077373409610118
AEAHAKVRL	9	Unmodified	_AEAHAKVRL_					0	0	0		ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	OvCa99_classI_Rep5	1	497.7927551269531	2	497.793258	993.571963	-0.045173	-2.2487E-05	-0.22729	-0.00011314	-0.27246	-0.00013563	497.7929566317532	32.627	0.93091	32.627	32.453	33.384	0					28	18	2	0	0	0	0.35444	1	1435	1435		56.721	10.769	1	765570			200	2389	157	157	215	215					0.07491984774276261
AEAKAKAKALV	11	Unmodified	_AEAKAKAKALV_					0	0	0			REV__chr9:35100996-35101426|101|50.77|0.0|22.28|-|2|None,STOML2|1	REV__chr9:35100996-35101426|101|50.77|0.0|22.28|-|2|None,STOML2|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.3272094726562	2	550.345323	1098.67609	1.0103	0.00055601	-0.43329	-0.00023846	0.577	0.00031755	550.3454493965884	86.754	0.29189	84.127	83.86	84.152	-2.6269					8	5	2	0	0	0	0.023097	1	7350	7350		66.962	6.8437	1	14400	+		201	16126	158	158	216	216					0.13070266811109832
AEAKKIERL	9	Unmodified	_AEAKKIERL_					0	0	0		ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;nc|ENSG00000183520|Q9Y3A2-2|UTP11	ENSG00000183520|ENST00000373014|UTP11	ENSG00000183520|ENST00000373014|UTP11	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.3221435546875	2	529.321848	1056.62914	-0.42285	-0.00022382	0.15093	7.9892E-05	-0.27192	-0.00014393	529.3218210721118	38.222	1.3387	35.296	35.057	36.395	-2.9264					74	26	4	0	0	0	0.23241	2	1468	1468;1493		70.816	0.50483	1	419980			202	8081	159	159	217;218	217					0.10309407260001535
AEALERMF	8	Unmodified	_AEALERMF_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966	ENSG00000206172|ENST00000320868|HBA1;CON__P01966	ENSG00000206172|ENST00000320868|HBA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	483.73907470703125	2	483.739302	965.464052	0.283	0.0001369	0.50443	0.00024401	0.78744	0.00038092	483.73945020448963	122.63	0.84311	121.27	121.06	121.9	-1.3666					25	16	2	0	0	0	0.72896	1	11589	11589		37.159	1.5408	1	61232		+	203	8476;615	160	160	219	219					-0.0200614787130462
AEALERMF	8	Unmodified	_AEALERMF_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966	ENSG00000206172|ENST00000320868|HBA1;CON__P01966	ENSG00000206172|ENST00000320868|HBA1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	483.739302	965.464052	-0.71258	-0.0003447	1.8575	0.00089856	1.1449	0.00055386	483.7399372440765	121.74	0.69317	121.55	121.25	121.94	-0.19718	0.17864	0.0011445	NaN	37.159	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23564		+	204	8476;615	160	160							-0.0200614787130462
AEALERMF	8	Unmodified	_AEALERMF_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2;CON__P01966	ENSG00000206172|ENST00000320868|HBA1;CON__P01966	ENSG00000206172|ENST00000320868|HBA1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	483.739302	965.464052	1.1287	0.000546	-0.19917	-9.6348E-05	0.92953	0.00044965	483.73903512930184	122.32	1.1547	121.29	121.01	122.16	-1.0286	-0.078176	-0.00084532	NaN	37.159	36	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63911		+	205	8476;615	160	160							-0.0200614787130462
AEALPEIIN	9	Unmodified	_AEALPEIIN_					0	0	0		tr|A0A7D6VVY7|A0A7D6VVY7_9CLOTPolysaccharidedeacetylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07040PE=4SV=1	tr|A0A7D6VVY7|A0A7D6VVY7_9CLOTPolysaccharidedeacetylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07040PE=4SV=1	tr|A0A7D6VVY7|A0A7D6VVY7_9CLOTPolysaccharidedeacetylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07040PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	485.2655334472656	2	485.266207	968.517862	0.5716	0.00027738	-0.71238	-0.00034569	-0.14078	-6.8317E-05	485.265720307919	71.372	2.094	68.865	68.281	70.375	-2.5071					105	39	4	0	0	0	0.38529	1	5739	5739		53.351	2.016	1	647640			206	35239	161	161	220	220					0.03234347832062667
AEALTSLIK	9	Unmodified	_AEALTSLIK_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	473.28387451171875	2	473.2844	944.554247	0.37929	0.00017951	-0.082379	-3.8989E-05	0.29691	0.00014052	473.28410446592477	125.1	1.0877	124.87	124.52	125.6	-0.2359					34	21	3	0	0	0	0.068524	1	12179	12179		108.09	3.3409	1	75666			207	13545	162	162	221	221					0.07975224728761532
AEALTSLIK	9	Unmodified	_AEALTSLIK_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	473.2844	944.554247	-1.6606	-0.00078594	1.53	0.00072412	-0.1306	-6.1812E-05	473.2850355269514	126.32	0.98356	124.9	124.58	125.56	-1.4143	0.0079176	0.0022447	NaN	108.09	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75394			208	13545	162	162							0.07975224728761532
AEAPLPSPKL	10	Unmodified	_AEAPLPSPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	OvCa9_classI_Rep3	3	512.2547607421875	2	511.797675	1021.5808	-0.88914	-0.00045506	0.56236	0.00028782	-0.32678	-0.00016724	511.79790034011944	87.031	1.5308	84.854	84.38	85.911	-2.1768					77	29	3	0	0	0	0.02709	1	5216	5216		96.034	33.926	1	481900			209	3687	163	163	222	222					0.07086913620082669
AEAPSQVRL	9	Unmodified	_AEAPSQVRL_					0	0	0		ENSG00000033100|ENST00000035307|CHPF2;nc|ENSG00000033100|Q9P2E5-2|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	MULTI-MSMS	OvCa99_classI_Rep5	1	485.7688903808594	2	485.769448	969.524344	-1.4651	-0.00071172	0.92319	0.00044846	-0.54194	-0.00026326	485.76976833660063	64.042	0.64703	64.042	63.814	64.461	0					37	15	3	0	0	0	0.094791	1	5795	5795		98.582	10.886	1	3444600			210	1074	164	164	223	223					0.03836285783427229
AEARVPVDL	9	Unmodified	_AEARVPVDL_					0	0	0			REV__ENST00000592462.5_1_17:42452826-42458421:-|nuORF	REV__ENST00000592462.5_1_17:42452826-42458421:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	485.270263671875	2	485.271824	968.529095	-1.1335	-0.00055003	1.9108	0.00092726	0.77736	0.00037723	485.27257043029624	53.07	2.1791	50.256	49.245	51.424	-2.8139					70	43	2	0	0	0	0.074342	1	3564	3564		104.75	19.387	1	257540	+		211	16407	165	165	224	224					0.04357169926197457
AEAVQKFFL	9	Unmodified	_AEAVQKFFL_					0	0	0		ENSG00000173726|ENST00000366607|TOMM20	ENSG00000173726|ENST00000366607|TOMM20	ENSG00000173726|ENST00000366607|TOMM20	MULTI-MSMS	OvCa99_classI_Rep5	1	526.7938232421875	2	526.792392	1051.57023	-0.42651	-0.00022468	0.17617	9.2806E-05	-0.25034	-0.00013187	526.7922799392193	104.85	0.77431	104.85	104.54	105.31	0					24	17	2	0	0	0	0.1944	1	11771	11771		77.318	18.536	1	921040			212	7409	166	166	225	225					0.046509309656585174
AEAVVEAMDF	10	Unmodified	_AEAVVEAMDF_					0	0	0		ENST00000528920.5_1_8:144695082-144695843:-|nuORF;ENST00000531473.5_1_8:144695082-144696778:-|nuORF;ENSG00000104522|ENST00000425753|GFUS	ENST00000528920.5_1_8:144695082-144695843:-|nuORF	ENST00000528920.5_1_8:144695082-144695843:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.3033447265625	2	541.247157	1080.47976	2.165	0.0011718	4.2051	0.002276	6.3701	0.0034478	541.2491026607719	110.62	0.75484	110.62	110.4	111.16	0					24	16	2	0	0	0	0.027028	1	12614	12614		31.53	13.205	1	141510			213	2381	167	167	226	226					-0.0572590614492583
AEAYLGKTV	9	Unmodified	_AEAYLGKTV_					0	0	0		nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000109971|ENST00000534624|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;HSPA8|p.A182Pfs*14|1|0.3|ENSG00000109971|chr11:123060136-123060137|-/TTTCTGGTGGAAACTACGAATGGTTTTGG|frameshift_variant;HSPA8|p.A182Vfs*18|1|0.31|ENSG00000109971|chr11:123060135-123060136|-/A|frameshift_variant;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;HSPA8|p.D333Gfs*25|1|0.46|ENSG00000109971|chr11:123059585-123059595|CAGGACAATAT/-|frameshift_variant;ENST00000456928.2_1_12:4206979-4207195:+|nuORF;ENST00000419827.2_1_7:10491071-10492091:+|nuORF	nc|ENSG00000109971|P11142-2|HSPA8	nc|ENSG00000109971|P11142-2|HSPA8	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.2640686035156	2	476.260925	950.507297	-0.54503	-0.00025958	0.2623	0.00012492	-0.28273	-0.00013466	476.26081758665725	65.887	1.5624	62.402	62.082	63.645	-3.4854					52	31	3	0	0	0	0.084918	1	4773	4773		101.25	5.4375	1	372270			214	2745	168	168	227	227					0.03006365177623138
AECPLTPVQ	9	Carbamidomethyl (C)	_AEC(Carbamidomethyl (C))PLTPVQ_	AEC(1)PLTPVQ		AEC(90)PLTPVQ		0	1	0			REV__ENSG00000148204|ENST00000373631|CRB2	REV__ENSG00000148204|ENST00000373631|CRB2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.8142395019531	2	507.749867	1013.48518	-0.045121	-2.291E-05	0.2414	0.00012257	0.19628	9.9661E-05	507.75000571488255	98.19	1.3666	95.812	95.013	96.38	-2.3786					36	26	2	0	0	0	0.027137	1	8655	8655		90.37	18.492	1	24125	+		215	20093	169	169	228	228	220				-0.02102182562452981
AEDASKFEL	9	Unmodified	_AEDASKFEL_					0	0	0		nc|ENSG00000020129|Q9UBB6-2|NCDN;ENSG00000020129|ENST00000373243|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	MULTI-MSMS	OvCa99_classI_Rep5	1	505.2461242675781	2	505.245472	1008.47639	1.3332	0.00067359	1.2072	0.00060994	2.5404	0.0012835	505.24592333381287	79.007	0.52518	79.007	78.75	79.276	0					24	12	3	0	0	0	0.10421	1	8042	8042		96.034	10.873	1	1384400			216	1020	170	170	229	229					-0.027508329272677656
AEDEFMLLA	9	Unmodified	_AEDEFMLLA_					0	0	0		nc|ENSG00000213889|Q8N819-2|PPM1N;ENSG00000213889|ENST00000451287|PPM1N	nc|ENSG00000213889|Q8N819-2|PPM1N	nc|ENSG00000213889|Q8N819-2|PPM1N	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.7781982421875	2	519.74425	1037.47395	0.039887	2.0731E-05	2.8411	0.0014766	2.881	0.0014974	519.7460374474921	78.718	0.20189	76.365	76.251	76.453	-2.3527					5	3	2	0	0	0	0.027462	1	4202	4202		33.516	0	1	9543.6			217	9153	171	171	230	230					-0.04329004656574398
AEDIVVNAPVE	11	Unmodified	_AEDIVVNAPVE_					0	0	0			REV__tr|A0A553SKW5|A0A553SKW5_NIACITranscriptionantiterminationproteinNusBOS=NialliacirculansOX=1397GN=nusBPE=3SV=1	REV__tr|A0A553SKW5|A0A553SKW5_NIACITranscriptionantiterminationproteinNusBOS=NialliacirculansOX=1397GN=nusBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.301025390625	2	578.298236	1154.58192	-0.9107	-0.00052665	3.0912	0.0017876	2.1805	0.001261	578.2998477716817	82.758	2.0258	80.075	79.684	81.71	-2.683					111	41	5	0	0	0	0.68059	1	6845	6845		36.318	0.69936	1	545120	+		218	30157	172	172	231	231					0.010810831983462776
AEDKDTPAL	9	Unmodified	_AEDKDTPAL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	OvCa99_classI_Rep5	1	480.2388000488281	2	480.237647	958.460741	-0.41202	-0.00019787	0.32426	0.00015572	-0.087762	-4.2147E-05	480.237753486205	51.729	1.2799	51.729	51.461	52.741	0					60	29	4	0	0	0	0.084918	2	4039	4007;4039		101.25	26.998	1	9541700			219	1754	173	173	232;233	233					-0.020151194443315035
AEDKPSTDL	9	Unmodified	_AEDKPSTDL_					0	0	0		nc|ENSG00000167674|Q7Z4V5-2|HDGFL2;ENSG00000167674|ENST00000616600|HDGFL2;nc|ENSG00000167674|Q7Z4V5-4|HDGFL2;nc|ENSG00000167674|Q7Z4V5-3|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	MULTI-MSMS	OvCa99_classI_Rep5	1	488.2333679199219	2	488.235104	974.455655	-0.081728	-3.9902E-05	0.21377	0.00010437	0.13204	6.4468E-05	488.2350865925281	46.653	0.7529	46.653	46.412	47.165	0					39	16	4	0	0	0	0.2422	1	3306	3306		69.628	2.134	1	1400800			220	6829	174	174	234	234					-0.03259423306928966
AEDPLGAIHL	10	Unmodified	_AEDPLGAIHL_					0	0	0		ENSG00000115956|ENST00000234313|PLEK	ENSG00000115956|ENST00000234313|PLEK	ENSG00000115956|ENST00000234313|PLEK	MULTI-MSMS	OvCa99_classI_Rep5	1	518.2787475585938	2	518.277106	1034.53966	1.2995	0.00067351	0.52401	0.00027158	1.8235	0.00094509	518.2772665637209	116.88	1.1476	116.88	116.55	117.7	0					60	24	4	0	0	0	0.015906	3	13375	13355;13375;13401		152.63	69.818	1	3807800			221	3141	175	175	235;236;237	236					0.023771525806296268
AEDPLGAIHL	10	Unmodified	_AEDPLGAIHL_					0	0	0		ENSG00000115956|ENST00000234313|PLEK	ENSG00000115956|ENST00000234313|PLEK	ENSG00000115956|ENST00000234313|PLEK	MULTI-MSMS	OvCa9_classI_Rep2	2	518.2760620117188	2	518.277106	1034.53966	-0.69548	-0.00036045	0.54159	0.00028069	-0.15389	-7.9757E-05	518.2772225893222	116.57	1.1377	116.44	116.12	117.26	-0.12869					55	22	3	0	0	0	0.16729	5	11145	11136;11140;11145;11153;11160		99.375	46.091	1	273590			222	3141	175	175	238;239;240;241;242	240					0.023771525806296268
AEDPLGAIHL	10	Unmodified	_AEDPLGAIHL_					0	0	0		ENSG00000115956|ENST00000234313|PLEK	ENSG00000115956|ENST00000234313|PLEK	ENSG00000115956|ENST00000234313|PLEK	MULTI-MSMS	OvCa9_classI_Rep3	3	518.2767333984375	2	518.277106	1034.53966	-0.42153	-0.00021847	0.355	0.00018399	-0.066526	-3.4479E-05	518.277134006681	117.26	1.0898	116.23	115.89	116.98	-1.0324					58	21	4	0	0	0	0.092658	5	8797	8786;8790;8797;8803;8809		115.46	49.03	1	249840			223	3141	175	175	243;244;245;246;247	245					0.023771525806296268
AEDPLGAIHL	10	Unmodified	_AEDPLGAIHL_					0	0	0		ENSG00000115956|ENST00000234313|PLEK	ENSG00000115956|ENST00000234313|PLEK	ENSG00000115956|ENST00000234313|PLEK	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.27685546875	2	518.277106	1034.53966	-0.88759	-0.00046002	0.66298	0.00034361	-0.22461	-0.00011641	518.2773199585503	117.49	1.0481	116.15	115.84	116.89	-1.3444					56	19	4	0	0	0	0.22395	4	10990	10980;10990;11002;11016		90.777	39.441	1	317980			224	3141	175	175	248;249;250;251	249					0.023771525806296268
AEDPLVQSL	9	Unmodified	_AEDPLVQSL_					0	0	0		nc|ENSG00000160285|P48449-2|LSS;nc|ENSG00000160285|P48449-3|LSS;ENSG00000160285|ENST00000397728|LSS	nc|ENSG00000160285|P48449-2|LSS	nc|ENSG00000160285|P48449-2|LSS	MULTI-MSMS	OvCa9_classI_Rep3	3	486.2568359375	2	486.25584	970.497126	-0.082695	-4.0211E-05	-0.5114	-0.00024867	-0.5941	-0.00028888	486.2553617212452	110.47	0.93076	109.32	109.03	109.96	-1.1444					31	17	4	0	0	0	0.14855	2	7980	7980;7986		85.161	10.906	1	141000			225	6053	176	176	252;253	252					0.01069757452387421
AEDPLVQSL	9	Unmodified	_AEDPLVQSL_					0	0	0		nc|ENSG00000160285|P48449-2|LSS;nc|ENSG00000160285|P48449-3|LSS;ENSG00000160285|ENST00000397728|LSS	nc|ENSG00000160285|P48449-2|LSS	nc|ENSG00000160285|P48449-2|LSS	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.25555419921875	2	486.25584	970.497126	0.65616	0.00031906	-0.75951	-0.00036932	-0.10335	-5.0256E-05	486.25529435295414	111.07	0.78917	109.47	109.17	109.96	-1.6011					38	14	4	0	0	0	0.38807	1	10233	10233		53.089	8.7118	1	125590			226	6053	176	176	254	254					0.01069757452387421
AEDRAQGL	8	Unmodified	_AEDRAQGL_					0	0	0		ENSG00000167460|ENST00000643579|TPM4;ENST00000587201.5_1_19:16187360-16198908:+|nuORF	ENSG00000167460|ENST00000643579|TPM4	ENSG00000167460|ENST00000643579|TPM4	MULTI-MSMS	OvCa99_classI_Rep5	1	430.2174072265625	2	430.217049	858.419545	-0.81904	-0.00035237	0.9351	0.0004023	0.11606	4.993E-05	430.21734627178466	36.893	0.49675	36.893	36.662	37.159	0					26	10	3	0	0	0	0.35821	1	1979	1979		96.19	18.873	1	589280			227	6790	177	177	255	255					-0.01532835693137713
AEDRPSEQL	9	Unmodified	_AEDRPSEQL_					0	0	0		nc|ENSG00000061273|Q8WUI4-9|HDAC7;nc|ENSG00000061273|Q8WUI4-2|HDAC7;nc|ENSG00000061273|Q8WUI4-10|HDAC7;nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;ENST00000459625.5_1_12:48177626-48178022:-|nuORF;ENST00000549883.5_1_12:48177626-48179064:-|nuORF;ENST00000380610.8_1_12:48177626-48179231:-|nuORF	nc|ENSG00000061273|Q8WUI4-9|HDAC7	nc|ENSG00000061273|Q8WUI4-9|HDAC7	MULTI-MSMS	OvCa99_classI_Rep5	1	522.7520751953125	2	522.751453	1043.48835	-0.83286	-0.00043538	0.32696	0.00017092	-0.5059	-0.00026446	522.7516167263819	48.004	0.81966	48.004	47.724	48.544	0					46	18	4	0	0	0	0.060996	1	3492	3492		112.41	27.051	1	3631300			228	1268	178	178	256	256					-0.031652161840838744
AEDSGLHII	9	Unmodified	_AEDSGLHII_					0	0	0		RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.T5031Rfs*29|1|0.06|ENSG00000173821|chr17:80389261-80389262|-/TCGG|frameshift_variant;RNF213|p.G5057Vfs*8|1|0.18|ENSG00000173821|chr17:80389340-80389340|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.N2986Tfs*32|1|0.9|ENSG00000173821|chr17:80347289-80347289|G/-|frameshift_variant;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	478.28564453125	2	477.748182	953.481811	0.09102	4.3485E-05	-0.13518	-6.4582E-05	-0.04416	-2.1098E-05	477.7479913515749	89.836	0.82118	87.755	87.388	88.209	-2.0805					25	15	2	0	0	0	0.027456	1	5531	5531		38.806	9.6566	1	48683			229	7416;32788	179	179	257	257					0.0032089065520040094
AEDSGLHII	9	Unmodified	_AEDSGLHII_					0	0	0		RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.T5031Rfs*29|1|0.06|ENSG00000173821|chr17:80389261-80389262|-/TCGG|frameshift_variant;RNF213|p.G5057Vfs*8|1|0.18|ENSG00000173821|chr17:80389340-80389340|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.N2986Tfs*32|1|0.9|ENSG00000173821|chr17:80347289-80347289|G/-|frameshift_variant;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	477.748182	953.481811	0.34992	0.00016717	-0.58714	-0.0002805	-0.23722	-0.00011333	477.74787733756324	90.542	0.71703	87.967	87.7	88.417	-2.575	0.10594	-0.00025958	NaN	38.806	25	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33755			230	7416;32788	179	179							0.0032089065520040094
AEDTPVVQL	9	Unmodified	_AEDTPVVQL_					0	0	0		ENSG00000013810|ENST00000313288|TACC3;ENST00000484651.5_1_4:1725148-1739714:+|nuORF	ENSG00000013810|ENST00000313288|TACC3	ENSG00000013810|ENST00000313288|TACC3	MULTI-MSMS	OvCa99_classI_Rep5	1	486.2570495605469	2	486.25584	970.497126	-2.6158	-0.001272	0.59144	0.00028759	-2.0244	-0.00098437	486.25602499314135	103.92	0.7225	103.92	103.64	104.36	0					35	16	3	0	0	0	0.13482	1	11627	11627		87.754	10.98	1	1352200			231	993	180	180	258	258					0.01069757452387421
AEDTPVVQL	9	Unmodified	_AEDTPVVQL_					0	0	0		ENSG00000013810|ENST00000313288|TACC3;ENST00000484651.5_1_4:1725148-1739714:+|nuORF	ENSG00000013810|ENST00000313288|TACC3	ENSG00000013810|ENST00000313288|TACC3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	486.25584	970.497126	-0.53427	-0.00025979	-1.251	-0.0006083	-1.7853	-0.0008681	486.2554339177638	104.32	0.44738	103.75	103.47	103.92	-0.57639	-0.087863	-0.001421	NaN	87.754	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29732			232	993	180	180							0.01069757452387421
AEDTRGQVL	9	Unmodified	_AEDTRGQVL_					0	0	0		LAMB2|p.A1715Sfs*4|1|0.69|ENSG00000172037|chr3:49121550-49121551|-/T|frameshift_variant;ENSG00000172037|ENST00000305544|LAMB2;LAMB2|p.P767Lfs*29|1|0.06|ENSG00000172037|chr3:49126011-49126012|-/TCCAAGACTTA|frameshift_variant;ENST00000483321.1_1_3:49166066-49166700:-|nuORF	LAMB2|p.A1715Sfs*4|1|0.69|ENSG00000172037|chr3:49121550-49121551|-/T|frameshift_variant	LAMB2|p.A1715Sfs*4|1|0.69|ENSG00000172037|chr3:49121550-49121551|-/T|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	494.7571105957031	2	494.756538	987.498523	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.681	1	47.681	47.181	48.181	0								0	0	0	0.027212	1	3450	3450		107.01	24.257	1				233	7262	181	181	259	259					0.004273915411431517
AEDVRKLKARP	11	Unmodified	_AEDVRKLKARP_					0	0	0		ENSG00000176244|ENST00000356189|ACBD7	ENSG00000176244|ENST00000356189|ACBD7	ENSG00000176244|ENST00000356189|ACBD7	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8831176757812	2	641.883136	1281.75172	-4.0037	-0.0025699	2.6785	0.0017193	-1.3252	-0.00085062	642.3862707583961	149.94	3.9275	149.71	147.52	151.45	-0.22696					225	78	5	0	0	0	0.72466	1	15231	15231		19.997	0.89325	1	222110			234	7593	182	182	260	260					0.12211243991396259
AEEAKEALL	9	Unmodified	_AEEAKEALL_					0	0	0		ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	MULTI-MSMS	OvCa99_classI_Rep5	1	487.2652282714844	2	487.263665	972.512776	-1.424	-0.00069387	0.95244	0.00046409	-0.47157	-0.00022978	487.26391091244705	64.096	0.88255	64.096	63.534	64.417	0					42	21	4	0	0	0	0.26076	1	5807	5807		67.494	1.0644	1	3901500			235	5327	183	183	261	261					0.025420439694244124
AEEASQEPEM	10	Unmodified	_AEEASQEPEM_					0	0	0		APBB1|p.I367Sfs*9|1|0.05|ENSG00000166313|chr11:6403151-6403151|C/-|frameshift_variant;nc|ENSG00000166313|O00213-2|APBB1;ENSG00000166313|ENST00000609360|APBB1	APBB1|p.I367Sfs*9|1|0.05|ENSG00000166313|chr11:6403151-6403151|C/-|frameshift_variant	APBB1|p.I367Sfs*9|1|0.05|ENSG00000166313|chr11:6403151-6403151|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.7979125976562	2	560.726786	1119.43902	3.3952	0.0019038	-3.2703	-0.0018337	0.12492	7.0048E-05	560.7249546433567	116.03	0.64301	116.03	115.77	116.42	0					19	13	2	0	0	0	0.026659	1	13261	13261		54.776	19.158	1	261410			236	100	184	184	262	262					-0.11592292255204484
AEEDKIPLL	9	Unmodified	_AEEDKIPLL_					0	0	0		ENSG00000144118|ENST00000272519|RALB;nc|ENSG00000144118|P11234-3|RALB;nc|ENSG00000144118|P11234-2|RALB	ENSG00000144118|ENST00000272519|RALB	ENSG00000144118|ENST00000272519|RALB	MULTI-MSMS	OvCa99_classI_Rep5	1	514.28857421875	2	514.28714	1026.55973	-0.068276	-3.5113E-05	3.5407	0.0018209	3.4724	0.0017858	514.2890122350611	101.71	0.89513	101.71	101.4	102.29	0					46	20	3	0	0	0	0.070405	1	11329	11329		107.01	4.2342	1	1628000			237	5130	185	185	263	263					0.047509035205848704
AEEEERQL	8	Unmodified	_AEEEERQL_					0	0	0			REV__ENSG00000154710|ENST00000284957|RABGEF1	REV__ENSG00000154710|ENST00000284957|RABGEF1	MULTI-MSMS	OvCa99_classI_Rep5	1	502.23828125	2	502.238178	1002.4618	-0.42147	-0.00021168	0.011023	5.5363E-06	-0.41045	-0.00020614	502.2381198665343	41.266	0.62403	41.266	40.969	41.594	0					33	13	4	0	0	0	0.38598	1	2560	2560		90.777	11.326	1	1424000	+		238	20393	186	186	264	264					-0.03932905075430426
AEEEERQL	8	Unmodified	_AEEEERQL_					0	0	0			REV__ENSG00000154710|ENST00000284957|RABGEF1	REV__ENSG00000154710|ENST00000284957|RABGEF1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	502.238178	1002.4618	-0.42147	-0.00021168	0.011023	5.5363E-06	-0.41045	-0.00020614	502.2381198665343	41.266	0.62403	41.266	40.969	41.594	0	0	0	NaN	90.777	33	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1424000	+		239	20393	186	186							-0.03932905075430426
AEEFWAAF	8	Unmodified	_AEEFWAAF_					0	0	0			REV__nc|ENSG00000108439|Q9NVS9-4|PNPO	REV__nc|ENSG00000108439|Q9NVS9-4|PNPO	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.78857421875	2	485.718893	969.423233	-0.080115	-3.8913E-05	-3.0901	-0.0015009	-3.1702	-0.0015398	485.71727301118625	76.195	0.37686	73.256	73.128	73.504	-2.9389					10	7	2	0	0	0	0.028476	1	6063	6063		21.702	0	1	26983	+		240	17887	187	187	265	265					-0.06270165919295323
AEEGGAARL	9	Unmodified	_AEEGGAARL_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;nc|ENSG00000173120|Q9Y2K7-4|KDM2A;nc|ENSG00000173120|Q9Y2K7-5|KDM2A;nc|ENSG00000173120|Q9Y2K7-2|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MULTI-MSMS	OvCa99_classI_Rep5	1	437.22540283203125	2	437.224874	872.435195	0.38699	0.0001692	-0.53668	-0.00023465	-0.14969	-6.545E-05	437.2245840885017	40.36	0.82402	40.36	39.971	40.795	0					35	17	4	0	0	0	0.37135	1	2444	2444		54.776	5.3348	1	689310			241	7350	188	188	266	266					-0.006125491761054036
AEEGRTLIR	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AEEGRTLIR_					1	0	0			REV__ENST00000476956.5_1_6:127588010-127588151:+|nuORF	REV__ENST00000476956.5_1_6:127588010-127588151:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	543.7984008789062	2	543.798737	1085.58292	-0.27846	-0.00015143	-0.8367	-0.000455	-1.1152	-0.00060642	543.798168443756	65.251	1.2563	65.251	64.955	66.212	0					85	31	5	0	0	0	0.14998	1	6024	6024		84.916	10.66	1	36400000	+		242	26376	189	189	267	267					0.043553423578941874
AEEIQKAID	9	Unmodified	_AEEIQKAID_					0	0	0		tr|A0A7D6W207|A0A7D6W207_9CLOTVWAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04665PE=4SV=1	tr|A0A7D6W207|A0A7D6W207_9CLOTVWAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04665PE=4SV=1	tr|A0A7D6W207|A0A7D6W207_9CLOTVWAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04665PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.3011474609375	2	508.766571	1015.51859	-1.2152	-0.00061825	0.64747	0.00032941	-0.56772	-0.00028884	508.76665185019226	102.59	1.1869	101.9	101.14	102.33	-0.68459					31	23	2	0	0	0	0.027459	1	9432	9432		29.17	12.697	1	14895			243	35419	190	190	268	268					0.011451424810957178
AEEKHLHVL	9	Unmodified	_AEEKHLHVL_					0	0	0		ENST00000553816.5_1_14:68151682-68162420:-|nuORF;nc|ENSG00000072042|Q8TC12-3|RDH11;nc|ENSG00000072042|Q8TC12-2|RDH11;ENSG00000072042|ENST00000381346|RDH11	ENST00000553816.5_1_14:68151682-68162420:-|nuORF	ENST00000553816.5_1_14:68151682-68162420:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	538.2996826171875	2	538.298373	1074.58219	-0.78753	-0.00042392	0.40942	0.00022039	-0.37811	-0.00020354	538.2984824596012	42.089	0.47646	42.089	41.853	42.329	0					26	10	3	0	0	0	0.27001	1	2678	2678		66.429	13.078	1	473190			244	1461	191	191	269	269					0.04788547708835722
AEEKLPMTL	9	Unmodified	_AEEKLPMTL_					0	0	0		ENSG00000165630|ENST00000378572|PRPF18	ENSG00000165630|ENST00000378572|PRPF18	ENSG00000165630|ENST00000378572|PRPF18	MULTI-SECPEP	OvCa9_classI_Rep3	3	516.8265380859375	2	516.275718	1030.53688	-0.022725	-1.1732E-05	0.28889	0.00014915	0.26617	0.00013742	516.2756478141728	94.482	1.1071	92.586	92.307	93.414	-1.8956					52	21	3	0	0	0	0.027353	1	6095	6095		62.107	5.6736	1	427700			245	6581	192	192	270	270					0.022835611314576454
AEEKLPMTL	9	Unmodified	_AEEKLPMTL_					0	0	0		ENSG00000165630|ENST00000378572|PRPF18	ENSG00000165630|ENST00000378572|PRPF18	ENSG00000165630|ENST00000378572|PRPF18	MULTI-MATCH	OvCa9_classI_Rep2	2		2	516.275718	1030.53688	-0.061472	-3.1737E-05	0.084549	4.3651E-05	0.023077	1.1914E-05	516.2755907089511	93.791	1.2244	92.692	92.382	93.606	-1.0995	0.053456	-0.0006475	NaN	62.107	52	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243630			246	6581	192	192							0.022835611314576454
AEEKLTHKM	9	Unmodified	_AEEKLTHKM_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF;nc|ENSG00000117632|P16949-2|STMN1;ENST00000485226.1_1_1:26227942-26230296:-|nuORF	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	OvCa99_classI_Rep5	1	543.7839965820312	2	543.784241	1085.55393	-0.23554	-0.00012809	0.41855	0.0002276	0.18301	9.9516E-05	543.7843028185409	30.111	0.59809	30.111	29.885	30.483	0					24	11	3	0	0	0	0.16264	1	1134	1134		82.75	13.123	1	346540			247	3269	193	193	271	271					0.0145748173724769
AEEKMRLV	8	Unmodified	_AEEKMRLV_					0	0	0		nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.26922607421875	2	488.268227	974.521901	-0.66992	-0.0003271	1.0989	0.00053658	0.42903	0.00020948	488.26881844340147	71.073	1.7956	67.617	67.251	69.047	-3.4563					76	36	3	0	0	0	0.53531	1	5422	5422		73.975	9.7675	1	1035500			248	7235	194	194	272	272					0.033621140541072236
AEEKTEIPK	9	Unmodified	_AEEKTEIPK_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.2792358398438	2	522.782222	1043.54989	-0.20753	-0.00010849	-0.75416	-0.00039426	-0.96169	-0.00050275	522.781535536533	74.528	1.5122	72.557	71.957	73.469	-1.9711					53	28	4	0	0	0	0.027462	1	6202	6202		34.173	1.3601	1	152190			249	7566	195	195	273	273					0.02985715515183074
AEELDIIKI	9	Unmodified	_AEELDIIKI_					0	0	0			REV__ENSG00000134602|ENST00000394334|STK26;REV__ENSG00000102572|ENST00000539966|STK24;REV__ENST00000495372.1_1_2:242440793-242447450:-|nuORF	REV__ENSG00000134602|ENST00000394334|STK26	MULTI-MSMS	OvCa9_classI_Rep3	3	522.3021240234375	2	522.30279	1042.59103	0.89914	0.00046962	-1.0118	-0.00052845	-0.11263	-5.8828E-05	522.3020473167026	127.79	1.1077	126.7	126.41	127.52	-1.0933					61	21	4	0	0	0	0.22621	1	10045	10045		71.877	2.2498	1	401130	+		250	19215;17563;26745	196	196	274	274					0.0714347655466554
AEELEKWI	8	Unmodified	_AEELEKWI_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;SPTAN1|p.Q1734Rfs*19|1|0.63|ENSG00000197694|chr9:128615697-128615725|CCAAGTAAAGGACAAGAGGGACACCATCA/-|frameshift_variant;SPTAN1|p.M1752Ifs*16|1|0.07|ENSG00000197694|chr9:128615752-128615753|-/TTCCTGAGTTCTTATG|frameshift_variant;SPTAN1|p.C956Afs*33|1|0.61|ENSG00000197694|chr9:128587691-128587691|C/-|frameshift_variant	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.271484375	2	509.266207	1016.51786	1.9141	0.0009748	-2.2556	-0.0011487	-0.34147	-0.0001739	509.76571960028696	92.551	0.41727	92.551	92.428	92.845	0					19	9	3	0	0	0	0.028476	1	10009	10009		79.451	17.344	1	686030			251	8736	197	197	275	275					0.010263478320553077
AEELEKWI	8	Unmodified	_AEELEKWI_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;SPTAN1|p.Q1734Rfs*19|1|0.63|ENSG00000197694|chr9:128615697-128615725|CCAAGTAAAGGACAAGAGGGACACCATCA/-|frameshift_variant;SPTAN1|p.M1752Ifs*16|1|0.07|ENSG00000197694|chr9:128615752-128615753|-/TTCCTGAGTTCTTATG|frameshift_variant;SPTAN1|p.C956Afs*33|1|0.61|ENSG00000197694|chr9:128587691-128587691|C/-|frameshift_variant	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	509.266207	1016.51786	-0.26741	-0.00013618	3.4646	0.0017644	3.1972	0.0016282	509.267846686126	93.555	1.3393	92.387	91.55	92.889	-1.168	-0.054039	-0.00036307	NaN	79.451	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98113			252	8736	197	197							0.010263478320553077
AEELEKWI	8	Unmodified	_AEELEKWI_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;SPTAN1|p.Q1734Rfs*19|1|0.63|ENSG00000197694|chr9:128615697-128615725|CCAAGTAAAGGACAAGAGGGACACCATCA/-|frameshift_variant;SPTAN1|p.M1752Ifs*16|1|0.07|ENSG00000197694|chr9:128615752-128615753|-/TTCCTGAGTTCTTATG|frameshift_variant;SPTAN1|p.C956Afs*33|1|0.61|ENSG00000197694|chr9:128587691-128587691|C/-|frameshift_variant	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	509.266207	1016.51786	-0.79964	-0.00040723	4.2652	0.0021721	3.4656	0.0017649	509.26821078808734	94.854	1.1022	92.386	91.96	93.062	-2.4685	-0.055746	0.0004524	NaN	79.451	42	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160710			253	8736	197	197							0.010263478320553077
AEELLRIGL	9	Unmodified	_AEELLRIGL_					0	0	0		nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF	nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-3|CCT8	MULTI-MSMS	OvCa9_classI_Rep2	2	507.30255126953125	2	507.303124	1012.5917	-0.33426	-0.00016957	0.43893	0.00022267	0.10467	5.3099E-05	507.30322999911056	114.47	1.3322	114.35	114.01	115.34	-0.11777					54	26	3	0	0	0	0.070405	2	10890	10890;10895		107.01	40.046	1	213220			254	5830	198	198	276;277	276					0.08590315994376851
AEELLRIGL	9	Unmodified	_AEELLRIGL_					0	0	0		nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF	nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-3|CCT8	MULTI-MSMS	OvCa9_classI_Rep3	3	507.30242919921875	2	507.303124	1012.5917	-0.72298	-0.00036677	1.4762	0.00074889	0.75323	0.00038211	507.30368528780406	115.24	1.7759	114.18	113.45	115.23	-1.055					83	35	3	0	0	0	0.094616	6	8545	8539;8545;8550;8555;8563;8568		98.629	32.2	1	234810			255	5830	198	198	278;279;280;281;282;283	279					0.08590315994376851
AEELLRIGL	9	Unmodified	_AEELLRIGL_					0	0	0		nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF	nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-3|CCT8	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.3023986816406	2	507.303124	1012.5917	-0.0021193	-1.0752E-06	0.63595	0.00032262	0.63383	0.00032154	507.3032500698358	115.55	1.6495	114.15	113.41	115.06	-1.3977					79	32	3	0	0	0	0.084918	3	10754	10746;10754;10766		101.25	30.975	1	276450			256	5830	198	198	284;285;286	285					0.08590315994376851
AEELRLLLP	9	Unmodified	_AEELRLLLP_					0	0	0		ENSG00000166946|ENST00000300213|CCNDBP1;ENST00000564630.5_1_15:43477651-43478217:+|nuORF;ENST00000566833.1_1_15:43477651-43481519:+|nuORF;nc|ENSG00000166946|O95273-2|CCNDBP1	ENSG00000166946|ENST00000300213|CCNDBP1	ENSG00000166946|ENST00000300213|CCNDBP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.3031616210938	2	527.318774	1052.623	1.5248	0.00080407	2.1891	0.0011543	3.7139	0.0019584	527.3191664679572	116.77	0.53589	116.77	116.42	116.95	0					15	11	2	0	0	0	0.027462	1	13366	13366		37.159	0	1	72522			257	6738	199	199	287	287					0.09878889028482263
AEEMENEDEM	10	Unmodified	_AEEMENEDEM_					0	0	0		ENSG00000116254|ENST00000262450|CHD5	ENSG00000116254|ENST00000262450|CHD5	ENSG00000116254|ENST00000262450|CHD5	MULTI-SECPEP	OvCa99_classI_Rep5	1	613.814697265625	2	613.713018	1225.41148	1.7618	0.0010812	-2.9676	-0.0018213	-1.2058	-0.00074003	614.212280834739	122.73	0.27505	122.73	122.63	122.91	0					10	5	3	0	0	0	0.027343	1	14149	14149		13.454	0	1	49076			258	3168	200	200	288	288					-0.19220563577755456
AEEPKARVL	9	Unmodified	_AEEPKARVL_					0	0	0		nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B;ENST00000468979.1_1_20:3782308-3783795:+|nuORF;ENST00000480816.5_1_20:3781734-3783795:+|nuORF	nc|ENSG00000101224|P30305-3|CDC25B	nc|ENSG00000101224|P30305-3|CDC25B	MULTI-MSMS	OvCa9_classI_Rep2	2	506.79229736328125	2	506.792924	1011.57129	-1.048	-0.00053113	0.696	0.00035273	-0.35202	-0.0001784	506.7931407063647	48.213	1.4407	45.504	45.133	46.573	-2.7097					54	28	2	0	0	0	0.10502	4	2992	2977;2981;2992;3007		95.815	13.575	1	333790			259	2156	201	201	289;290;291;292	291					0.06597145334569632
AEEPKARVL	9	Unmodified	_AEEPKARVL_					0	0	0		nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B;ENST00000468979.1_1_20:3782308-3783795:+|nuORF;ENST00000480816.5_1_20:3781734-3783795:+|nuORF	nc|ENSG00000101224|P30305-3|CDC25B	nc|ENSG00000101224|P30305-3|CDC25B	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.794189453125	2	506.792924	1011.57129	-1.3101	-0.00066397	0.29075	0.00014735	-1.0194	-0.00051662	506.79321373025203	48.637	1.5556	45.529	45.141	46.697	-3.1077					92	29	4	0	0	0	0.27001	2	2696	2696;2709		66.429	3.8775	1	1364100			260	2156	201	201	293;294	293					0.06597145334569632
AEEPLVDVYI	10	Unmodified	_AEEPLVDVYI_					0	0	0			REV__ENSG00000122122|ENST00000356892|SASH3	REV__ENSG00000122122|ENST00000356892|SASH3	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.34716796875	2	574.297704	1146.58086	1.8688	0.0010732	-2.8042	-0.0016104	-0.9354	-0.0005372	574.2958591972276	100.11	0.58556	100.11	99.817	100.4	0					31	13	3	0	0	0	0.026688	1	11088	11088		32.812	0	1	1354500	+		261	18577	202	202	295	295					0.013428688294425228
AEEPLVDVYI	10	Unmodified	_AEEPLVDVYI_					0	0	0			REV__ENSG00000122122|ENST00000356892|SASH3	REV__ENSG00000122122|ENST00000356892|SASH3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	574.297704	1146.58086	-1.959	-0.001125	1.5789	0.00090675	-0.38006	-0.00021827	574.2983274105571	101.13	0.29757	100.37	100.22	100.52	-0.76401	0.13079	0.004793	NaN	39.253	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9920.2	+		262	18577	202	202							0.013428688294425228
AEEPSRAVL	9	Unmodified	_AEEPSRAVL_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MULTI-MSMS	OvCa99_classI_Rep5	1	486.2624816894531	2	486.261456	970.50836	0.13173	6.4054E-05	-0.30737	-0.00014946	-0.17564	-8.5407E-05	486.26115702170455	57.632	0.67476	57.632	57.309	57.984	0					38	15	3	0	0	0	0.3076	1	4853	4853		62.107	5.3864	1	4090900			263	4083	203	203	296	296					0.021925795465108422
AEERAGAELI	10	Unmodified	_AEERAGAELI_					0	0	0		tr|A0A553SHT1|A0A553SHT1_NIACIPhosphate/phosphite/phosphonateABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13460PE=3SV=1	tr|A0A553SHT1|A0A553SHT1_NIACIPhosphate/phosphite/phosphonateABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13460PE=3SV=1	tr|A0A553SHT1|A0A553SHT1_NIACIPhosphate/phosphite/phosphonateABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13460PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.332763671875	2	529.77747	1057.54039	-1.3056	-0.0006917	1.557	0.00082486	0.25134	0.00013316	529.7780256207126	57.194	0.74331	54.402	54.08	54.823	-2.792					20	14	2	0	0	0	0.026577	1	4091	4091		58.23	10.573	1	31862			264	33307	204	204	297	297					0.01391947229649304
AEERLRPT	8	Unmodified	_AEERLRPT_					0	0	0		ENSG00000169641|ENST00000302291|LUZP1	ENSG00000169641|ENST00000302291|LUZP1	ENSG00000169641|ENST00000302291|LUZP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	485.2825927734375	2	486.267073	970.519593	-1.9372	-0.00094201	1.5296	0.00074381	-0.4076	-0.0001982	486.26772825487615	35.241	0.84521	32.531	32.306	33.152	-2.7097					29	16	3	0	0	0	0.028476	1	1389	1389		15.642	0	1	52734			265	7026	205	205	298	298					0.03315401640657001
AEESQIRIEL	10	Unmodified	_AEESQIRIEL_					0	0	0		ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	MULTI-MSMS	OvCa99_classI_Rep5	1	594.3192138671875	2	594.31696	1186.61937	2.3132	0.0013748	-2.4371	-0.0014484	-0.12392	-7.3651E-05	594.3147594028515	97.046	0.81366	97.046	96.753	97.566	0					28	18	2	0	0	0	0.32747	1	10652	10652		77.533	13.999	1	736200			266	4281	206	206	299	299					0.03352174463952906
AEESQIRIEL	10	Unmodified	_AEESQIRIEL_					0	0	0		ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	594.31696	1186.61937	0.10507	6.2444E-05	0.65706	0.0003905	0.76213	0.00045294	594.3172091815892	98.991	0.36184	96.666	96.382	96.743	-2.3253	-0.19034	0.0018894	NaN	77.533	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15566			267	4281	206	206							0.03352174463952906
AEEYLYPD	8	Unmodified	_AEEYLYPD_					0	0	0		ENSG00000153395|ENST00000283415|LPCAT1;ENST00000503252.1_1_5:1463768-1467406:-|nuORF	ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.2889404296875	2	500.218923	998.423293	-0.1882	-9.414E-05	0.5961	0.00029818	0.4079	0.00020404	500.21877292680495	80.2	0.55633	77.86	77.66	78.217	-2.3399					14	10	2	0	0	0	0.028476	1	4359	4359		25.45	0	1	17326			268	5679	207	207	300	300					-0.07598210709943487
AEFAERSVAKL	11	Unmodified	_AEFAERSVAKL_					0	0	0		nc|ENSG00000198467|P07951-3|TPM2;nc|ENSG00000198467|P07951-2|TPM2;CON__Q3SX28;ENSG00000198467|ENST00000645482|TPM2;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000143549|P06753-7|TPM3;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-5|TPM3;ENST00000600996.1_1_19:42012510-42012810:+|nuORF	nc|ENSG00000198467|P07951-3|TPM2;nc|ENSG00000143549|P06753-3|TPM3	nc|ENSG00000143549|P06753-3|TPM3	MULTI-MSMS	OvCa99_classI_Rep5	1	407.56121826171875	3	407.559305	1219.65609	0.50491	0.00020578	-0.5299	-0.00021597	-0.024989	-1.0185E-05	407.55896964684456	65.488	0.59682	65.488	65.271	65.867	0					35	14	4	0	0	0	0.55686	1	6020	6020		73.9	30.399	1	2047800		+	269	15257;15075	208	208	301	301					0.05504471080530493
AEFAERSVAKL	11	Unmodified	_AEFAERSVAKL_					0	0	0		nc|ENSG00000198467|P07951-3|TPM2;nc|ENSG00000198467|P07951-2|TPM2;CON__Q3SX28;ENSG00000198467|ENST00000645482|TPM2;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000143549|P06753-7|TPM3;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-5|TPM3;ENST00000600996.1_1_19:42012510-42012810:+|nuORF	nc|ENSG00000198467|P07951-3|TPM2;nc|ENSG00000143549|P06753-3|TPM3	nc|ENSG00000143549|P06753-3|TPM3	MULTI-MATCH	OvCa9_classI_Rep2	2		3	407.559305	1219.65609	0.063605	2.5923E-05	0.15053	6.1352E-05	0.21414	8.7275E-05	407.5592591552098	67.835	0.98579	65.174	64.892	65.878	-2.661	-0.12385	0.00088119	NaN	73.9	54	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103310		+	270	15257;15075	208	208							0.05504471080530493
AEFAERSVAKL	11	Unmodified	_AEFAERSVAKL_					0	0	0		nc|ENSG00000198467|P07951-3|TPM2;nc|ENSG00000198467|P07951-2|TPM2;CON__Q3SX28;ENSG00000198467|ENST00000645482|TPM2;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000143549|P06753-7|TPM3;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-5|TPM3;ENST00000600996.1_1_19:42012510-42012810:+|nuORF	nc|ENSG00000198467|P07951-3|TPM2;nc|ENSG00000143549|P06753-3|TPM3	nc|ENSG00000143549|P06753-3|TPM3	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	407.559305	1219.65609	1.3005	0.00053005	-1.1691	-0.0004765	0.13139	5.3549E-05	407.5587577440233	68.722	1.0832	65.232	64.965	66.048	-3.4902	-0.066006	-0.00073236	NaN	73.9	44	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139340		+	271	15257;15075	208	208							0.05504471080530493
AEFAERSVTKL	11	Unmodified	_AEFAERSVTKL_					0	0	0		nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-4|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-6|TPM1;ENSG00000140416|ENST00000403994|TPM1;ENST00000559108.1_1_15:63354467-63358183:+|nuORF;ENST00000558264.5_1_15:63353458-63363368:+|nuORF	nc|ENSG00000140416|P09493-8|TPM1	nc|ENSG00000140416|P09493-8|TPM1	MULTI-MSMS	OvCa99_classI_Rep5	1	417.5643310546875	3	417.562827	1249.66665	0.47852	0.00019981	-0.182	-7.5998E-05	0.29652	0.00012381	417.5627181066399	64.594	0.54102	64.594	64.334	64.875	0					35	12	4	0	0	0	0.38584	1	5873	5873		62.166	9.2295	1	2219100			272	15054	209	209	302	302					0.05180453734942603
AEFHTELERL	10	Unmodified	_AEFHTELERL_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	OvCa99_classI_Rep5	1	622.8193359375	2	622.817127	1243.6197	1.0538	0.00065631	1.092	0.00068014	2.1458	0.0013365	622.8173937069263	79.063	0.48081	79.063	78.83	79.311	0					29	11	4	0	0	0	0.47131	1	8054	8054		58.246	3.5239	1	1378200			273	1970	210	210	303	303					0.007635941838088911
AEFIDHPKV	9	Unmodified	_AEFIDHPKV_					0	0	0			REV__nc|ENSG00000130176|P51911-2|CNN1	REV__nc|ENSG00000130176|P51911-2|CNN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.7526245117188	2	528.279649	1054.54475	0.47417	0.00025049	2.1518	0.0011368	2.626	0.0013873	528.2803571454009	141.21	0.70525	141.21	140.88	141.59	0					24	13	3	0	0	0	0.027462	1	16491	16491		21.96	3.6355	1	92752	+		274	18926	211	211	304	304					0.0196545644323578
AEFIIGRLN	9	Unmodified	_AEFIIGRLN_					0	0	0			REV__ENSG00000176787|ENST00000321522|OR52E2	REV__ENSG00000176787|ENST00000321522|OR52E2	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.277099609375	2	516.795466	1031.57638	1.8612	0.00096184	4.0981	0.0021179	5.9593	0.0030797	516.7976155993917	92.859	0.29036	92.859	92.721	93.011	0					9	6	2	0	0	0	0.02741	1	10062	10062		71.296	18.359	1	130240	+		275	21969	212	212	305	305					0.06185449197187154
AEFKEAFQL	9	Unmodified	_AEFKEAFQL_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF;ENST00000549017.5_1_12:56552185-56553840:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-MSMS	OvCa99_classI_Rep5	1	541.78125	2	541.779482	1081.54441	1.2992	0.00070387	0.26321	0.0001426	1.5624	0.00084647	541.7796788225012	101.29	2.3236	101.29	100.98	103.3	0					187	54	6	0	0	0	0.0072874	4	11266	11236;11266;11298;11352		190.26	43.476	1	74144000			276	1901;14919	213	213	306;307;308;309	307					0.0069003672338112665
AEFKEAFQL	9	Unmodified	_AEFKEAFQL_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF;ENST00000549017.5_1_12:56552185-56553840:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-MSMS	OvCa9_classI_Rep2	2	541.7796630859375	2	541.779482	1081.54441	-1.6791	-0.0009097	1.3743	0.00074455	-0.30483	-0.00016515	541.7800786584007	102	1.9771	101.24	100.91	102.89	-0.76401					110	39	5	0	0	0	0.0085876	7	9381	9364;9369;9375;9381;9387;9393;9399		176.44	28.385	1	2753500			277	1901;14919	213	213	310;311;312;313;314;315;316	313					0.0069003672338112665
AEFKEAFQL	9	Unmodified	_AEFKEAFQL_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF;ENST00000549017.5_1_12:56552185-56553840:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-MSMS	OvCa9_classI_Rep3	3	541.780517578125	2	541.779482	1081.54441	0.12096	6.5533E-05	-0.46952	-0.00025438	-0.34857	-0.00018885	541.7790922187847	102.8	2.8693	101.28	100.63	103.5	-1.5211					122	54	5	0	0	0	0.0076252	8	7108	7074;7078;7084;7090;7096;7108;7114;7120		195.05	68.803	1	3334400			278	1901;14919	213	213	317;318;319;320;321;322;323;324	322					0.0069003672338112665
AEFKEAFQL	9	Unmodified	_AEFKEAFQL_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF;ENST00000549017.5_1_12:56552185-56553840:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.781005859375	2	541.779482	1081.54441	-1.0545	-0.00057129	0.57745	0.00031285	-0.47701	-0.00025843	541.7798411287257	103.42	2.2784	101.22	100.94	103.21	-2.1994					78	43	2	0	0	0	0.0079542	5	9338	9327;9338;9350;9362;9374		199.7	45.586	1	3250100			279	1901;14919	213	213	325;326;327;328;329	326					0.0069003672338112665
AEFKEAFQLF	10	Unmodified	_AEFKEAFQLF_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF;ENST00000549017.5_1_12:56552185-56553840:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-MSMS	OvCa99_classI_Rep5	1	615.31396484375	2	615.313689	1228.61282	1.6083	0.00098964	0.19149	0.00011783	1.7998	0.0011075	615.3137018346551	127.03	0.80571	127.03	126.69	127.49	0					44	17	5	0	0	0	0.33877	1	14689	14689		76.17	17.94	1	3069300			280	1901;14919	214	214	330	330					0.007662813032311533
AEFKEAFQLF	10	Unmodified	_AEFKEAFQLF_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF;ENST00000549017.5_1_12:56552185-56553840:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-MSMS	OvCa9_classI_Rep2	2	615.3142700195312	2	615.313689	1228.61282	0.20171	0.00012412	-0.40796	-0.00025102	-0.20625	-0.00012691	615.3133591810388	126.31	2.1704	126.07	125.75	127.92	-0.2359					129	43	5	0	0	0	0.013471	9	12317	12310;12317;12322;12328;12334;12341;12347;12353;12367		155.58	57.003	1	1360300			281	1901;14919	214	214	331;332;333;334;335;336;337;338;339	332					0.007662813032311533
AEFKEAFQLF	10	Unmodified	_AEFKEAFQLF_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF;ENST00000549017.5_1_12:56552185-56553840:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-MSMS	OvCa9_classI_Rep3	3	615.313720703125	2	615.313689	1228.61282	2.3588	0.0014514	-2.3923	-0.001472	-0.033458	-2.0587E-05	615.3121380084621	127.27	2.1219	126.2	125.86	127.98	-1.0715					127	41	5	0	0	0	0.017847	11	9971	9960;9965;9971;9977;9984;9990;9997;10004;10010;10016;10022		150.36	57.218	1	1410300			282	1901;14919	214	214	340;341;342;343;344;345;346;347;348;349;350	342					0.007662813032311533
AEFKEAFQLF	10	Unmodified	_AEFKEAFQLF_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF;ENST00000549017.5_1_12:56552185-56553840:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-MSMS	OvCa9_classI_Rep4_	4	615.3126831054688	2	615.313689	1228.61282	-0.58486	-0.00035987	0.18558	0.00011419	-0.39929	-0.00024569	615.3136875257243	127.55	2.6164	126.11	125.79	128.41	-1.4357					157	51	6	0	0	0	0.05764	9	12172	12150;12160;12172;12185;12197;12209;12221;12248;12260		126.24	32.61	1	1467500			283	1901;14919	214	214	351;352;353;354;355;356;357;358;359	353					0.007662813032311533
AEFKEAFSLF	10	Unmodified	_AEFKEAFSLF_					0	0	0		ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000556757.5_1_14:90863574-90867886:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF	ENSG00000198668|ENST00000356978|CALM1	ENSG00000198668|ENST00000356978|CALM1	MULTI-MSMS	OvCa9_classI_Rep2	2	594.8002319335938	2	594.800414	1187.58628	0.53832	0.00032019	-0.81392	-0.00048412	-0.2756	-0.00016393	594.7997667758614	127.64	1.4813	127.42	127.14	128.62	-0.22697					82	29	4	0	0	0	0.03438	5	12487	12487;12490;12496;12502;12509		134.77	47.011	1	412050			284	5109	215	215	360;361;362;363;364	360					-1.4075880926611717E-05
AEFKEAFSLF	10	Unmodified	_AEFKEAFSLF_					0	0	0		ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000556757.5_1_14:90863574-90867886:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF	ENSG00000198668|ENST00000356978|CALM1	ENSG00000198668|ENST00000356978|CALM1	MULTI-MSMS	OvCa9_classI_Rep3	3	594.80029296875	2	594.800414	1187.58628	1.1495	0.00068373	-1.1262	-0.00066989	0.023263	1.3837E-05	594.7996528767478	128.73	1.3837	127.64	127.32	128.7	-1.0933					81	27	4	0	0	0	0.010439	10	10139	10130;10133;10139;10144;10150;10157;10164;10170;10178;10202		159.28	49.156	1	364060			285	5109	215	215	365;366;367;368;369;370;371;372;373;374	367					-1.4075880926611717E-05
AEFKEAFSLF	10	Unmodified	_AEFKEAFSLF_					0	0	0		ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;ENST00000597868.5_1_19:47104691-47111872:+|nuORF;ENST00000556757.5_1_14:90863574-90867886:+|nuORF;ENST00000555267.1_1_14:90866417-90870426:+|nuORF	ENSG00000198668|ENST00000356978|CALM1	ENSG00000198668|ENST00000356978|CALM1	MULTI-MSMS	OvCa9_classI_Rep4_	4	594.7999267578125	2	594.800414	1187.58628	1.352	0.00080415	-1.4373	-0.00085488	-0.08529	-5.073E-05	594.7994258170389	128.98	1.7805	127.53	127.2	128.98	-1.4565					105	35	5	0	0	0	0.03438	7	12335	12324;12335;12346;12358;12371;12384;12397		134.77	38.95	1	471240			286	5109	215	215	375;376;377;378;379;380;381	376					-1.4075880926611717E-05
AEFKHLTL	8	Unmodified	_AEFKHLTL_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	OvCa9_classI_Rep2	2	479.7711486816406	2	479.77146	957.528367	-0.027451	-1.317E-05	0.12127	5.818E-05	0.093815	4.501E-05	479.7714361650209	72.282	1.7759	69.775	69.381	71.157	-2.5071					93	33	4	0	0	0	0.24597	1	5843	5843		116.9	5.2553	1	1082900			287	6923	216	216	382	382					0.04790375277127623
AEFKHLTL	8	Unmodified	_AEFKHLTL_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.7717590332031	2	479.77146	957.528367	-0.72858	-0.00034955	0.87923	0.00042183	0.15065	7.2279E-05	479.77180148237096	73.547	1.387	70.151	69.881	71.269	-3.3961					73	28	3	0	0	0	0.40148	1	5707	5707		87.754	7.8151	1	1146600			288	6923	216	216	383	383					0.04790375277127623
AEFKHLTL	8	Unmodified	_AEFKHLTL_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	479.77146	957.528367	0.44334	0.0002127	-0.53611	-0.00025721	-0.092764	-4.4505E-05	479.7710096779293	72.446	1.8355	69.844	69.62	71.456	-2.6023	-0.079355	-0.00040545	NaN	116.9	56	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131980			289	6923	216	216							0.04790375277127623
AEFKHPVED	9	Unmodified	_AEFKHPVED_					0	0	0			REV__tr|A0A7D6ZFJ8|A0A7D6ZFJ8_9CLOTcysteinedesulfuraseOS=ClostridiumintestinaleOX=36845GN=sufSPE=3SV=1	REV__tr|A0A7D6ZFJ8|A0A7D6ZFJ8_9CLOTcysteinedesulfuraseOS=ClostridiumintestinaleOX=36845GN=sufSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.2800903320312	2	536.258914	1070.50327	-1.7799	-0.00095449	4.3233	0.0023184	2.5434	0.0013639	536.2611096772134	73.489	0.58097	70.093	69.881	70.462	-3.3961					24	11	3	0	0	0	0.027462	1	5741	5741		27.882	0	1	112890	+		290	31972	217	217	384	384					-0.029157243160852886
AEFKHPVED	9	Unmodified	_AEFKHPVED_					0	0	0			REV__tr|A0A7D6ZFJ8|A0A7D6ZFJ8_9CLOTcysteinedesulfuraseOS=ClostridiumintestinaleOX=36845GN=sufSPE=3SV=1	REV__tr|A0A7D6ZFJ8|A0A7D6ZFJ8_9CLOTcysteinedesulfuraseOS=ClostridiumintestinaleOX=36845GN=sufSPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	536.258914	1070.50327	-0.60474	-0.0003243	3.2008	0.0017165	2.5961	0.0013922	536.2606328085566	72.226	1.2014	69.719	69.174	70.375	-2.5072	-0.18686	-0.00037979	NaN	40.778	37	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28327	+		291	31972	217	217							-0.029157243160852886
AEFKLIPGL	9	Unmodified	_AEFKLIPGL_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	OvCa9_classI_Rep2	2	494.2987365722656	2	494.29731	986.580068	0.59231	0.00029278	-0.68142	-0.00033682	-0.089108	-4.4046E-05	494.29678378725345	123.89	1.2329	123.66	123.34	124.57	-0.23193					56	24	3	0	0	0	0.44568	1	12025	12025		47.657	8.4045	1	136770			292	2130	218	218	385	385					0.08624118971033568
AEFLVLTLN	9	Unmodified	_AEFLVLTLN_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.7922058105469	2	510.292225	1018.5699	2.7097	0.0013827	-1.0669	-0.00054441	1.6428	0.00083833	510.2915817297384	87.806	1.0066	87.806	87.42	88.426	0					37	23	2	0	0	0	0.027462	1	9320	9320		41.427	15.853	1	423250			293	7566	219	219	386	386					0.06135511245804537
AEFQDALEKL	10	Unmodified	_AEFQDALEKL_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	OvCa99_classI_Rep5	1	582.3029174804688	2	582.300778	1162.587	2.0036	0.0011667	0.46084	0.00026835	2.4645	0.0014351	582.3008562943809	107.48	0.6282	107.48	107.23	107.86	0					37	14	3	0	0	0	0.18515	1	12131	12131		96.665	6.0642	1	2186700			294	9254	220	220	387	387					0.012213870609457445
AEFQDALEKL	10	Unmodified	_AEFQDALEKL_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	OvCa9_classI_Rep2	2	582.3012084960938	2	582.300778	1162.587	-0.098976	-5.7634E-05	0.062751	3.654E-05	-0.036224	-2.1094E-05	582.3007290963994	107.79	1.7147	107.49	107.03	108.74	-0.30051					70	34	3	0	0	0	0.093557	5	10078	10073;10078;10084;10090;10098		115.23	21.53	1	483070			295	9254	220	220	388;389;390;391;392	389					0.012213870609457445
AEFQDALEKL	10	Unmodified	_AEFQDALEKL_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	OvCa9_classI_Rep3	3	582.3016967773438	2	582.300778	1162.587	-1.1516	-0.00067058	1.4414	0.00083934	0.28982	0.00016876	582.3014720562243	108.59	1.8128	107.39	106.96	108.77	-1.1978					78	34	4	0	0	0	0.0076777	5	7760	7760;7764;7770;7777;7784		162.64	25.647	1	576680			296	9254	220	220	393;394;395;396;397	393					0.012213870609457445
AEFQDALEKL	10	Unmodified	_AEFQDALEKL_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	OvCa9_classI_Rep4_	4	582.3016967773438	2	582.300778	1162.587	-1.3273	-0.00077288	1.6291	0.00094862	0.3018	0.00017574	582.3016182084024	109.12	1.7654	107.4	106.97	108.73	-1.7256					78	33	4	0	0	0	0.022626	4	10001	10001;10011;10023;10035		144.77	38.085	1	574570			297	9254	220	220	398;399;400;401	398					0.012213870609457445
AEFQEHEHAL	10	Unmodified	_AEFQEHEHAL_					0	0	0		nc|ENSG00000106344|Q9NW13-2|RBM28;RBM28|p.N724Kfs*2|1|0.2|ENSG00000106344|chr7:128310905-128310906|-/C|frameshift_variant;ENSG00000106344|ENST00000223073|RBM28	nc|ENSG00000106344|Q9NW13-2|RBM28	nc|ENSG00000106344|Q9NW13-2|RBM28	MULTI-MSMS	OvCa99_classI_Rep5	1	605.7798461914062	2	605.778002	1209.54145	-0.29399	-0.00017809	0.14675	8.8899E-05	-0.14724	-8.9192E-05	605.7779250579979	50.752	0.52643	50.752	50.551	51.078	0					26	11	3	0	0	0	0.42082	1	3878	3878		65.465	14.273	1	1237600			298	2544	221	221	402	402					-0.054938384014121766
AEFTKSIAKF	10	Unmodified	_AEFTKSIAKF_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MSMS	OvCa9_classI_Rep2	2	571.316162109375	2	571.316232	1140.61791	-1.292	-0.00073816	0.93579	0.00053463	-0.35625	-0.00020353	571.3165780657878	75.255	1.5581	73.284	72.948	74.507	-1.9711					87	29	4	0	0	0	0.042975	2	6192	6187;6192		131.62	41.246	1	580650			299	3303	222	222	403;404	404					0.05322585165822602
AEFTKSIAKF	10	Unmodified	_AEFTKSIAKF_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MSMS	OvCa9_classI_Rep3	3	571.3171997070312	2	571.316232	1140.61791	-0.98778	-0.00056433	0.57968	0.00033118	-0.4081	-0.00023316	571.3164088414582	75.457	2.0015	73.046	72.726	74.728	-2.4106					115	38	5	0	0	0	0.03438	4	3824	3819;3824;3831;3837		134.77	55.315	1	911120			300	3303	222	222	405;406;407;408	406					0.05322585165822602
AEFTKSIAKF	10	Unmodified	_AEFTKSIAKF_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	571.3182373046875	2	571.316232	1140.61791	-0.20308	-0.00011602	-0.14329	-8.1866E-05	-0.34637	-0.00019789	571.3160272456398	76.274	1.3817	73.335	73.08	74.462	-2.9389					77	28	4	0	0	0	0.11648	2	6051	6041;6051		109.44	41.945	1	618760			301	3303	222	222	409;410	410					0.05322585165822602
AEFVFSVLV	9	Unmodified	_AEFVFSVLV_					0	0	0		nc|ENSG00000095539|Q9NTN9-3|SEMA4G;nc|ENSG00000095539|Q9NTN9|SEMA4G;ENSG00000095539|ENST00000210633|SEMA4G	nc|ENSG00000095539|Q9NTN9-3|SEMA4G	nc|ENSG00000095539|Q9NTN9-3|SEMA4G	MULTI-MSMS	OvCa9_classI_Rep2	2	505.77935791015625	2	505.781493	1009.54843	-5.3397	-0.0027007	-0.55561	-0.00028101	-5.8953	-0.0029817	505.7810830949029	160.38	0.80586	160.15	159.98	160.79	-0.22696					23	15	2	0	0	0	0.53957	1	16320	16320		38.806	1.647	1	68219			302	1931	223	223	411	411					0.044041262170935624
AEFVFSVLV	9	Unmodified	_AEFVFSVLV_					0	0	0		nc|ENSG00000095539|Q9NTN9-3|SEMA4G;nc|ENSG00000095539|Q9NTN9|SEMA4G;ENSG00000095539|ENST00000210633|SEMA4G	nc|ENSG00000095539|Q9NTN9-3|SEMA4G	nc|ENSG00000095539|Q9NTN9-3|SEMA4G	MULTI-MATCH	OvCa9_classI_Rep3	3		2	505.781493	1009.54843	-7.3093	-0.0036969	1.2518	0.00063315	-6.0575	-0.0030638	505.78198992823184	161.49	0.8385	160.12	159.84	160.68	-1.3692	-0.099076	0.00068035	NaN	38.806	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33027			303	1931	223	223							0.044041262170935624
AEFVFSVLV	9	Unmodified	_AEFVFSVLV_					0	0	0		nc|ENSG00000095539|Q9NTN9-3|SEMA4G;nc|ENSG00000095539|Q9NTN9|SEMA4G;ENSG00000095539|ENST00000210633|SEMA4G	nc|ENSG00000095539|Q9NTN9-3|SEMA4G	nc|ENSG00000095539|Q9NTN9-3|SEMA4G	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	505.781493	1009.54843	-6.8358	-0.0034574	1.0856	0.00054907	-5.7502	-0.0029083	505.7818207814875	162	0.56514	160.38	160.18	160.75	-1.6239	0.16125	0.00051218	NaN	38.806	25	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23727			304	1931	223	223							0.044041262170935624
AEGAFYGSR	9	Unmodified	_AEGAFYGSR_					0	0	0			REV__tr|A0A7D6VP87|A0A7D6VP87_9CLOTLD-carboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21545PE=3SV=1	REV__tr|A0A7D6VP87|A0A7D6VP87_9CLOTLD-carboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21545PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	479.224609375	2	479.224874	956.435195	-0.63931	-0.00030637	0.30021	0.00014387	-0.33909	-0.0001625	479.2249464491493	37.508	0.86343	37.508	37.205	38.069	0					41	18	4	0	0	0	0.22621	1	2058	2058		71.877	3.0906	1	1235900	+		305	31234	224	224	412	412					-0.044765491760927034
AEGAFYGSR	9	Unmodified	_AEGAFYGSR_					0	0	0			REV__tr|A0A7D6VP87|A0A7D6VP87_9CLOTLD-carboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21545PE=3SV=1	REV__tr|A0A7D6VP87|A0A7D6VP87_9CLOTLD-carboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21545PE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	479.224874	956.435195	-0.63931	-0.00030637	0.30021	0.00014387	-0.33909	-0.0001625	479.2249464491493	37.508	0.86343	37.508	37.205	38.069	0	0	0	NaN	71.877	41	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1235900	+		306	31234	224	224							-0.044765491760927034
AEGAPRAAI	9	Unmodified	_AEGAPRAAI_					0	0	0			REV__ENST00000576416.5_1_16:3185237-3185438:+|nuORF	REV__ENST00000576416.5_1_16:3185237-3185438:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	428.2387390136719	2	428.237784	854.461016	0.61498	0.00026336	-0.72308	-0.00030965	-0.1081	-4.6292E-05	428.2373350133255	47.955	1.8924	44.847	44.237	46.129	-3.1077					76	36	3	0	0	0	0.31747	1	2607	2607		60.972	0.67798	1	507230	+		307	25339	225	225	413	413					0.027963450661786737
AEGDLIEHF	9	Unmodified	_AEGDLIEHF_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MSMS	OvCa9_classI_Rep3	3	515.7459716796875	2	515.745639	1029.47673	-0.24824	-0.00012803	-0.059934	-3.0911E-05	-0.30818	-0.00015894	515.7455082038487	95.957	1.4646	94.128	93.88	95.345	-1.8286					70	28	4	0	0	0	0.010619	4	6277	6277;6283;6289;6295		166.78	78.14	1	652640			308	7709	226	226	414;415;416;417	414					-0.036834132074318404
AEGDLIEHF	9	Unmodified	_AEGDLIEHF_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7465209960938	2	515.745639	1029.47673	0.52734	0.00027197	-0.54447	-0.00028081	-0.017135	-8.8373E-06	515.7452324805904	96.616	1.2574	94.19	93.862	95.119	-2.4256					64	24	4	0	0	0	0.0076713	3	8525	8525;8536;8550		181.81	99.565	1	654650			309	7709	226	226	418;419;420	418					-0.036834132074318404
AEGDLIEHF	9	Unmodified	_AEGDLIEHF_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.745639	1029.47673	-0.036579	-1.8865E-05	-0.2595	-0.00013384	-0.29608	-0.0001527	515.7453882162783	95.336	1.4885	94.308	93.923	95.411	-1.0281	0.099296	-6.6468E-06	NaN	181.81	79	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	375780			310	7709	226	226							-0.036834132074318404
AEGDLVRLL	9	Unmodified	_AEGDLVRLL_					0	0	0		ENSG00000100365|ENST00000248899|NCF4	ENSG00000100365|ENST00000248899|NCF4	ENSG00000100365|ENST00000248899|NCF4	MULTI-MSMS	OvCa9_classI_Rep2	2	493.2870788574219	2	493.287474	984.560395	0.82619	0.00040755	-1.0665	-0.00052608	-0.2403	-0.00011853	493.2868798563699	111.47	1.4782	111.33	110.88	112.36	-0.13961					66	29	3	0	0	0	0.064985	3	10517	10517;10524;10537		110.12	13.283	1	352570			311	2058	227	227	421;422;423	421					0.06749742960278127
AEGDLVRLL	9	Unmodified	_AEGDLVRLL_					0	0	0		ENSG00000100365|ENST00000248899|NCF4	ENSG00000100365|ENST00000248899|NCF4	ENSG00000100365|ENST00000248899|NCF4	MULTI-MSMS	OvCa9_classI_Rep3	3	493.2864685058594	2	493.287474	984.560395	1.6253	0.00080173	-1.9004	-0.00093746	-0.27517	-0.00013574	493.28648571944865	112.27	1.3268	111.16	110.75	112.07	-1.1038					67	26	4	0	0	0	0.049969	4	8191	8191;8196;8202;8209		118.74	27.966	1	437200			312	2058	227	227	424;425;426;427	424					0.06749742960278127
AEGDLVRLL	9	Unmodified	_AEGDLVRLL_					0	0	0		ENSG00000100365|ENST00000248899|NCF4	ENSG00000100365|ENST00000248899|NCF4	ENSG00000100365|ENST00000248899|NCF4	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.2872314453125	2	493.287474	984.560395	0.46838	0.00023105	-0.89527	-0.00044163	-0.42689	-0.00021058	493.2869754558419	112.68	1.3465	111.17	110.74	112.08	-1.5111					73	26	4	0	0	0	0.060996	2	10410	10410;10419		112.41	19.215	1	486740			313	2058	227	227	428;429	428					0.06749742960278127
AEGDVAKLQV	10	Unmodified	_AEGDVAKLQV_					0	0	0			REV__ENST00000563000.5_1_15:45879846-45897630:+|nuORF	REV__ENST00000563000.5_1_15:45879846-45897630:+|nuORF	MSMS	OvCa9_classI_Rep2	2	515.283203125	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.43	1	106.12	105.62	106.62	-0.30836								0	0	0	0.035478	1	9910	9910		113.41	0	1		+		314	27653	228	228	430	430					0.037091352350216766
AEGHTDAVL	9	Unmodified	_AEGHTDAVL_					0	0	0		ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	MULTI-MSMS	OvCa99_classI_Rep5	1	456.72589111328125	2	456.724707	911.43486	-0.6731	-0.00030742	0.88495	0.00040418	0.21185	9.6756E-05	456.7249786055418	49.617	0.78571	49.617	49.287	50.073	0					36	17	3	0	0	0	0.19716	1	3713	3713		76.847	8.0598	1	2333600			315	4451	229	229	431	431					-0.024399688959533705
AEGHVESLQ	9	Unmodified	_AEGHVESLQ_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.P12974Lfs*4|1|0.05|ENSG00000155657|chr2:178631204-178631205|-/GTACA|frameshift_variant;TTN|p.E11597Rfs*5|1|0.5|ENSG00000155657|chr2:178651954-178651954|A/-|frameshift_variant;TTN|p.R11195Efs*5|1|0.15|ENSG00000155657|chr2:178674318-178674318|A/-|frameshift_variant;TTN|p.E9011Nfs*14|1|0.03|ENSG00000155657|chr2:178711255-178711255|T/-|frameshift_variant;TTN|p.G8550Tfs*3|1|0.05|ENSG00000155657|chr2:178714032-178714059|ATTTGTTGTCACTTGTTAGCTCTTTTCC/-|frameshift_variant;TTN|p.S7694Qfs*32|1|0.04|ENSG00000155657|chr2:178719360-178719360|G/-|frameshift_variant;TTN|p.C7689Pfs*18|1|0.03|ENSG00000155657|chr2:178719373-178719374|CA/-|frameshift_variant;TTN|p.L7641Yfs*6|1|0.07|ENSG00000155657|chr2:178719621-178719621|T/-|frameshift_variant;TTN|p.T6904Lfs*6|1|0.08|ENSG00000155657|chr2:178723439-178723439|T/-|frameshift_variant;TTN|p.V5150Afs*3|1|0.06|ENSG00000155657|chr2:178732661-178732661|A/-|frameshift_variant;TTN|p.R4157*|1|0.07|ENSG00000155657|chr2:178739814-178739815|-/C|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.84368896484375	2	485.235439	968.456324	0.81712	0.00039649	3.19	0.0015479	4.0071	0.0019444	485.23684139317214	66.983	0.59781	66.983	66.739	67.337	0					28	14	3	0	0	0	0.027402	1	6236	6236		66.429	10.925	1	1272500			316	5793;36288	230	230	432	432					-0.029165838672270183
AEGIVRYCPI	10	Unmodified	_AEGIVRYCPI_					0	0	0		tr|A0A553SGN0|A0A553SGN0_NIACIDUF2892domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11160PE=4SV=1	tr|A0A553SGN0|A0A553SGN0_NIACIDUF2892domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11160PE=4SV=1	tr|A0A553SGN0|A0A553SGN0_NIACIDUF2892domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11160PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.3126831054688	2	560.794609	1119.57467	2.5905	0.0014528	-3.6956	-0.0020725	-1.1051	-0.00061975	560.7920853364525	80.619	0.67715	80.619	80.443	81.12	0					25	15	2	0	0	0	0.026915	1	8286	8286		20.947	11.241	1	244800			317	33175	231	231	433	433					0.019660721168975215
AEGKDGEDSV	10	Unmodified	_AEGKDGEDSV_					0	0	0		ENSG00000004848|ENST00000379044|ARX	ENSG00000004848|ENST00000379044|ARX	ENSG00000004848|ENST00000379044|ARX	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.27764892578125	2	503.719818	1005.42508	0.083044	4.1831E-05	-4.2985	-0.0021653	-4.2155	-0.0021234	503.7174493733907	84.19	0.42386	81.527	81.215	81.639	-2.6629					9	8	2	0	0	0	0.027088	1	7034	7034		14.137	0	1	25480			318	835	232	232	434	434					-0.07741201691987953
AEGKDGEDSV	10	Unmodified	_AEGKDGEDSV_					0	0	0		ENSG00000004848|ENST00000379044|ARX	ENSG00000004848|ENST00000379044|ARX	ENSG00000004848|ENST00000379044|ARX	MULTI-MATCH	OvCa99_classI_Rep5	1		2	503.719818	1005.42508	0.53668	0.00027034	-4.2927	-0.0021623	-3.7561	-0.001892	503.7174915891662	81.168	0.46405	81.168	80.949	81.413	0	-0.17948	5.0431E-07	NaN	31.53	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	757690			319	835	232	232							-0.07741201691987953
AEGKFSVSL	9	Unmodified	_AEGKFSVSL_					0	0	0		ENSG00000205403|ENST00000394634|CFI	ENSG00000205403|ENST00000394634|CFI	ENSG00000205403|ENST00000394634|CFI	MULTI-MSMS	OvCa99_classI_Rep5	1	469.2544250488281	2	469.2531	936.491647	2.5584	0.0012005	-0.2929	-0.00013744	2.2655	0.0010631	469.2528182456816	84.534	1.3233	84.534	84.261	85.585	0					60	31	3	0	0	0	0.066102	1	8827	8827		109.48	29.766	1	5994500			320	9070	233	233	435	435					0.0208607866057946
AEGKFSVSL	9	Unmodified	_AEGKFSVSL_					0	0	0		ENSG00000205403|ENST00000394634|CFI	ENSG00000205403|ENST00000394634|CFI	ENSG00000205403|ENST00000394634|CFI	MULTI-MSMS	OvCa9_classI_Rep2	2	469.25299072265625	2	469.2531	936.491647	-0.81664	-0.00038321	0.22171	0.00010404	-0.59493	-0.00027918	469.25318248509967	85.958	1.5353	84.467	84.146	85.682	-1.4907					88	29	4	0	0	0	0.030867	8	7461	7433;7443;7449;7455;7461;7468;7476;7483		134.77	47.069	1	1202700			321	9070	233	233	436;437;438;439;440;441;442;443	440					0.0208607866057946
AEGKFSVSL	9	Unmodified	_AEGKFSVSL_					0	0	0		ENSG00000205403|ENST00000394634|CFI	ENSG00000205403|ENST00000394634|CFI	ENSG00000205403|ENST00000394634|CFI	MULTI-MSMS	OvCa9_classI_Rep3	3	469.2537536621094	2	469.2531	936.491647	-0.79526	-0.00037318	0.65772	0.00030864	-0.13754	-6.4541E-05	469.25341955315633	86.432	2.2386	84.255	84.03	86.269	-2.1768					105	43	4	0	0	0	0.013371	4	5146	5135;5140;5146;5160		158.07	32.838	1	2599900			322	9070	233	233	444;445;446;447	446					0.0208607866057946
AEGKFSVSL	9	Unmodified	_AEGKFSVSL_					0	0	0		ENSG00000205403|ENST00000394634|CFI	ENSG00000205403|ENST00000394634|CFI	ENSG00000205403|ENST00000394634|CFI	MULTI-MSMS	OvCa9_classI_Rep4_	4	469.2535705566406	2	469.2531	936.491647	0.31431	0.00014749	-1.0458	-0.00049074	-0.73148	-0.00034325	469.2526284802752	87.047	1.8582	84.42	84.152	86.01	-2.6269					102	36	5	0	0	0	0.012992	5	7380	7380;7392;7406;7418;7444		159.28	33.462	1	1998000			323	9070	233	233	448;449;450;451;452	448					0.0208607866057946
AEGPELVSL	9	Unmodified	_AEGPELVSL_					0	0	0		nc|ENSG00000204520|Q29983-2|MICA;nc|ENSG00000204516|Q29980-2|MICB;nc|ENSG00000204520|Q29983|MICA;ENSG00000204516|ENST00000252229|MICB	nc|ENSG00000204520|Q29983-2|MICA	nc|ENSG00000204520|Q29983-2|MICA	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.314453125	2	457.745108	913.475663	0.067663	3.0973E-05	0.91577	0.00041919	0.98343	0.00045016	457.74532751235245	71.643	0.56702	71.643	71.349	71.916	0					21	13	3	0	0	0	0.027462	1	6938	6938		14.865	0	1	211810			324	8994	234	234	453	453					0.015463724236610688
AEGQPSSPGQ	10	Unmodified	_AEGQPSSPGQ_					0	0	0			REV__nc|ENSG00000067369|Q12888|TP53BP1	REV__nc|ENSG00000067369|Q12888|TP53BP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.2635192871094	2	479.217246	956.419939	0.17066	8.1783E-05	-0.46581	-0.00022322	-0.29515	-0.00014144	479.2169185108532	32.279	0.4478	32.279	32.105	32.553	0					12	8	2	0	0	0	0.02676	1	1385	1385		41.427	15.853	1	74109	+		325	16833	235	235	454	454					-0.06001460763934574
AEGRGMVVAR	10	Unmodified	_AEGRGMVVAR_					0	0	0		ENST00000515562.1_1_5:176943012-176943857:-|nuORF;ENST00000505081.5_1_5:176943012-176943946:-|nuORF	ENST00000515562.1_1_5:176943012-176943857:-|nuORF	ENST00000515562.1_1_5:176943012-176943857:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	523.2809448242188	2	523.2822	1044.54985	-1.4275	-0.000747	0.68884	0.00036046	-0.73869	-0.00038654	523.2824999293261	36.739	0.62696	36.739	36.532	37.159	0					22	13	3	0	0	0	0.62299	1	1956	1956		39.253	3.6345	1	259410			326	12888	236	236	455	455					0.029354370341934555
AEGTDALGPNV	11	Unmodified	_AEGTDALGPNV_					0	0	0		nc|ENSG00000128487|Q5M775-5|SPECC1;nc|ENSG00000128487|Q5M775-3|SPECC1;nc|ENSG00000128487|Q5M775-2|SPECC1;nc|ENSG00000128487|Q5M775-4|SPECC1;ENSG00000128487|ENST00000395527|SPECC1	nc|ENSG00000128487|Q5M775-5|SPECC1	nc|ENSG00000128487|Q5M775-5|SPECC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.798583984375	2	522.253828	1042.4931	-0.42191	-0.00022034	0.76827	0.00040123	0.34636	0.00018089	522.2539954335925	58.999	1.0954	55.607	55.35	56.445	-3.392					31	21	2	0	0	0	0.025487	1	3922	3922		19.263	0	1	60863			327	3881	237	237	456	456					-0.026443320413363836
AEGTRNQAEL	10	Unmodified	_AEGTRNQAEL_					0	0	0			REV__nc|ENSG00000173230|Q14789|GOLGB1	REV__nc|ENSG00000173230|Q14789|GOLGB1	MULTI-MSMS	OvCa9_classI_Rep2	2	544.7718505859375	2	544.770177	1087.5258	0.58838	0.00032053	2.7326	0.0014886	3.321	0.0018092	544.7716121580505	42.458	1.4825	39.749	39.522	41.005	-2.7097					77	29	4	0	0	0	0.40664	1	2279	2279		67.494	10.773	1	940130	+		328	21758	238	238	457	457					-0.014461249184705594
AEGWGGSARGR	11	Unmodified	_AEGWGGSARGR_					0	0	0			REV__ENST00000482242.5_1_3:73046075-73046219:+|nuORF	REV__ENST00000482242.5_1_3:73046075-73046219:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.28955078125	2	552.270678	1102.5268	0.3476	0.00019197	3.6066	0.0019918	3.9542	0.0021838	552.2733233148879	94.73	0.68719	93.631	93.411	94.098	-1.0995					19	13	2	0	0	0	0.025457	1	8479	8479		22.58	0	1	15111	+		329	26498	239	239	458	458					-0.020358657588985807
AEHFCCILA	9	Unmodified	_AEHFCCILA_					0	0	0			REV__ENSG00000172209|ENST00000304402|GPR22	REV__ENSG00000172209|ENST00000304402|GPR22	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.784912109375	2	503.72788	1005.44121	-0.39059	-0.00019675	-1.5404	-0.00077596	-1.931	-0.00097271	503.7276301942519	68.528	0.37727	68.528	68.315	68.692	0					11	8	2	0	0	0	0.027462	1	6473	6473		38.806	0	1	106860	+		330	21681	240	240	459	459					-0.061294902604345225
AEHFLEQQM	9	Oxidation (M)	_AEHFLEQQM(Oxidation (M))_		AEHFLEQQM(1)		AEHFLEQQM(100)	0	0	1		ENSG00000163468|ENST00000295688|CCT3;nc|ENSG00000163468|P49368-2|CCT3;chr1:156333622-156338154|425|19.52|0.7|4.8|-|ENST00000533194|CCT3,CCT3	ENSG00000163468|ENST00000295688|CCT3	ENSG00000163468|ENST00000295688|CCT3	MULTI-MSMS	OvCa9_classI_Rep4_	4	574.75732421875	2	574.755681	1147.49681	-0.80471	-0.00046251	0.65396	0.00037587	-0.15075	-8.6646E-05	574.75573949101	63.506	1.2075	60.031	59.625	60.833	-3.475					58	24	3	0	0	0	0.075543	1	4473	4473		104.06	19.141	1	371540			331	6311	241	241	460	460		199			-0.07103985539129098
AEHFLEQQM	9	Oxidation (M)	_AEHFLEQQM(Oxidation (M))_					0	0	1		ENSG00000163468|ENST00000295688|CCT3;nc|ENSG00000163468|P49368-2|CCT3;chr1:156333622-156338154|425|19.52|0.7|4.8|-|ENST00000533194|CCT3,CCT3	ENSG00000163468|ENST00000295688|CCT3	ENSG00000163468|ENST00000295688|CCT3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	574.755681	1147.49681	-2.6948	-0.0015489	2.6789	0.0015397	-0.015936	-9.1591E-06	574.7569092362927	62.901	1.2427	60.157	59.548	60.79	-2.7444	0.063101	0.0011412	NaN	104.06	47	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54801			332	6311	241	241				199			-0.07103985539129098
AEHIESRTL	9	Unmodified	_AEHIESRTL_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;PLIN2|p.Q379Lfs*8|1|0.08|ENSG00000147872|chr9:19116426-19116427|-/TGTTTTCATGGAGA|frameshift_variant	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	OvCa99_classI_Rep5	1	528.2775268554688	2	528.277638	1054.54072	-0.69697	-0.00036819	0.023143	1.2226E-05	-0.67383	-0.00035597	528.277653630047	41.572	1.1776	41.572	41.195	42.372	0					78	26	5	0	0	0	0.014158	2	2596	2596;2620		155.58	62.389	1	10009000			333	5378	242	242	461;462	461					0.01563366949540068
AEHIESRTL	9	Unmodified	_AEHIESRTL_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;PLIN2|p.Q379Lfs*8|1|0.08|ENSG00000147872|chr9:19116426-19116427|-/TGTTTTCATGGAGA|frameshift_variant	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	OvCa9_classI_Rep2	2	528.27880859375	2	528.277638	1054.54072	-0.84285	-0.00044526	0.64543	0.00034097	-0.19742	-0.00010429	528.2777903129592	46.35	1.9317	43.64	43.349	45.281	-2.7097					82	38	3	0	0	0	0.24899	1	2754	2754		68.846	15.495	1	241450			334	5378	242	242	463	463					0.01563366949540068
AEHLASDLQ	9	Unmodified	_AEHLASDLQ_					0	0	0			REV__nc|ENSG00000051825|Q99550-2|MPHOSPH9	REV__nc|ENSG00000051825|Q99550-2|MPHOSPH9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.8188781738281	2	492.243264	982.471974	-0.078529	-3.8656E-05	0.64519	0.00031759	0.56666	0.00027893	492.2435762145913	62.862	1.3101	59.405	58.864	60.174	-3.4577					60	26	3	0	0	0	0.027426	1	4390	4390		53.351	2.016	1	300650	+		335	16689	243	243	464	464					-0.019962973501833403
AEHLEKSSL	9	Unmodified	_AEHLEKSSL_					0	0	0		RIF1|p.L2186Qfs*51|1|0.07|ENSG00000080345|chr2:151466077-151466077|T/-|frameshift_variant;nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1;SECISBP2-RIF1|1|fusion;SECISBP2-RIF1|2|fusion	RIF1|p.L2186Qfs*51|1|0.07|ENSG00000080345|chr2:151466077-151466077|T/-|frameshift_variant	RIF1|p.L2186Qfs*51|1|0.07|ENSG00000080345|chr2:151466077-151466077|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	507.266357421875	2	507.266739	1012.51892	-0.40263	-0.00020424	0.1657	8.4052E-05	-0.23694	-0.00012019	507.26668673768	38.871	0.6263	38.871	38.661	39.287	0					36	13	4	0	0	0	0.0441	1	2242	2242		123.21	5.397	1	1152800			336	1634	244	244	465	465					0.013165622009523759
AEHRTPDVL	9	Unmodified	_AEHRTPDVL_					0	0	0		ENST00000394563.4_1_X:85340081-85340624:-|nuORF;STIP1-GPR137|1|fusion;nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1	ENST00000394563.4_1_X:85340081-85340624:-|nuORF;STIP1-GPR137|1|fusion	STIP1-GPR137|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	519.2730712890625	2	519.272355	1036.53016	-0.50836	-0.00026398	0.33432	0.0001736	-0.17405	-9.0379E-05	519.2724920575374	46.985	0.87645	46.985	46.719	47.595	0					36	19	4	0	0	0	0.45842	1	3355	3355		46.457	10.01	1	933220			337	11270;6908	245	245	466	466					0.01335384295066433
AEHSLPHYL	9	Unmodified	_AEHSLPHYL_					0	0	0		ENSG00000167123|ENST00000372838|CERCAM;CERCAM|p.D282Tfs*9|1|0.18|ENSG00000167123|chr9:128428377-128428377|A/-|frameshift_variant;ENST00000493788.5_1_9:131183063-131183351:+|nuORF;ENST00000372842.5_2_9:131183063-131183354:+|nuORF	ENSG00000167123|ENST00000372838|CERCAM	ENSG00000167123|ENST00000372838|CERCAM	MULTI-MSMS	OvCa99_classI_Rep5	1	533.7717895507812	2	533.769448	1065.52434	0.15102	8.061E-05	-0.83711	-0.00044682	-0.68609	-0.00036621	533.7690850425232	64.708	0.81475	64.708	64.375	65.19	0					36	13	4	0	0	0	0.22961	1	5902	5902		71.296	19.96	1	2742900			338	6760	246	246	467	467					-0.005797142165874902
AEHSLPHYL	9	Unmodified	_AEHSLPHYL_					0	0	0		ENSG00000167123|ENST00000372838|CERCAM;CERCAM|p.D282Tfs*9|1|0.18|ENSG00000167123|chr9:128428377-128428377|A/-|frameshift_variant;ENST00000493788.5_1_9:131183063-131183351:+|nuORF;ENST00000372842.5_2_9:131183063-131183354:+|nuORF	ENSG00000167123|ENST00000372838|CERCAM	ENSG00000167123|ENST00000372838|CERCAM	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	533.769448	1065.52434	0.032915	1.7569E-05	0.8261	0.00044095	0.85901	0.00045851	534.2714487429056	68.111	0.24182	64.621	64.478	64.72	-3.4902	-0.043165	0.0011566	NaN	71.296	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11592			339	6760	246	246							-0.005797142165874902
AEHYTETAL	9	Unmodified	_AEHYTETAL_					0	0	0		nc|ENSG00000096063|Q96SB4-4|SRPK1;ENSG00000096063|ENST00000373825|SRPK1;nc|ENSG00000096063|Q96SB4-3|SRPK1;ENST00000513367.1_1_6:35855779-35888866:-|nuORF	nc|ENSG00000096063|Q96SB4-4|SRPK1	nc|ENSG00000096063|Q96SB4-4|SRPK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.2841796875	2	517.743096	1033.47164	-0.573	-0.00029667	0.37875	0.0001961	-0.19424	-0.00010057	517.7430952588408	58.764	0.40194	58.764	58.53	58.932	0					22	9	4	0	0	0	0.027433	1	5011	5011		60.972	23.813	1	1888700			340	1943	247	247	468	468					-0.04375717070047358
AEIDARNDSF	10	Unmodified	_AEIDARNDSF_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OvCa99_classI_Rep5	1	569.2637329101562	2	569.262185	1136.50982	-0.99724	-0.00056769	1.1809	0.00067223	0.18365	0.00010454	569.2625996370474	65.686	0.35756	65.686	65.546	65.904	0					21	8	3	0	0	0	0.11648	1	6050	6050		109.44	45.232	1	1014400			341	3083	248	248	469	469					-0.05297831155394306
AEIDARNDSF	10	Unmodified	_AEIDARNDSF_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	569.262185	1136.50982	-1.5493	-0.00088199	2.2883	0.0013026	0.73896	0.00042066	569.2630911553329	68.464	0.79153	65.844	65.376	66.167	-2.6203	0.11054	0.0015886	NaN	109.44	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30260			342	3083	248	248							-0.05297831155394306
AEIDARNDSF	10	Unmodified	_AEIDARNDSF_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	569.262185	1136.50982	-0.05795	-3.2989E-05	0.19606	0.00011161	0.13811	7.8623E-05	569.2618507167435	69.16	1.0276	65.67	65.212	66.24	-3.4902	-0.063478	-0.00079351	NaN	109.44	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128250			343	3083	248	248							-0.05297831155394306
AEIEKFDKSKL	11	Unmodified	_AEIEKFDKSKL_					0	0	0		ENSG00000154620|ENST00000284856|TMSB4Y;ENSG00000205542|ENST00000451311|TMSB4X;ENST00000323496.5_1_9:131104444-131104642:+|nuORF	ENSG00000154620|ENST00000284856|TMSB4Y	ENSG00000154620|ENST00000284856|TMSB4Y	MULTI-MSMS	OvCa9_classI_Rep2	2	436.5779724121094	3	436.578365	1306.71327	0.0019379	8.4604E-07	-0.0075082	-3.2779E-06	-0.0055703	-2.4319E-06	436.57825644012144	59.847	1.4639	57.077	56.672	58.136	-2.7702					93	27	6	0	0	0	0.10156	3	4386	4380;4386;4393		96.756	19.222	1	465830			344	5746	249	249	470;471;472	471					0.07217893566212297
AEIEKFDKSKL	11	Unmodified	_AEIEKFDKSKL_					0	0	0		ENSG00000154620|ENST00000284856|TMSB4Y;ENSG00000205542|ENST00000451311|TMSB4X;ENST00000323496.5_1_9:131104444-131104642:+|nuORF	ENSG00000154620|ENST00000284856|TMSB4Y	ENSG00000154620|ENST00000284856|TMSB4Y	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.5797424316406	3	436.578365	1306.71327	0.60728	0.00026512	-0.45729	-0.00019964	0.14999	6.5482E-05	436.57800505170314	60.667	1.4199	57.237	56.898	58.318	-3.43					80	28	5	0	0	0	0.38584	1	4126	4126		62.166	5.0174	1	588300			345	5746	249	249	473	473					0.07217893566212297
AEIEQYRL	8	Unmodified	_AEIEQYRL_					0	0	0		ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	ENSG00000136888|ENST00000374050|ATP6V1G1	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.2685241699219	2	511.269281	1020.52401	-0.81429	-0.00041632	1.1845	0.0006056	0.37022	0.00018928	511.26973748234553	80.181	1.1235	77.47	77.027	78.15	-2.7106					49	22	3	0	0	0	0.42649	1	6543	6543		84.916	4.9763	1	258680			346	4529	250	250	474	474					0.0145686606357458
AEIFSAVSAID	11	Unmodified	_AEIFSAVSAID_					0	0	0			REV__SPATA16|p.T232A|1|0.49|ENSG00000144962|chr3:173049013-173049013|T/C|missense_variant	REV__SPATA16|p.T232A|1|0.49|ENSG00000144962|chr3:173049013-173049013|T/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	561.3088989257812	2	561.787504	1121.56045	0.50278	0.00028245	-0.085458	-4.8009E-05	0.41732	0.00023444	561.7874377400185	80.64	0.82919	77.929	77.615	78.445	-2.7106					27	16	2	0	0	0	0.025457	1	6585	6585		36.447	19.974	1	40699	+		347	29447	251	251	475	475					0.0045369816962193
AEILGLPSPP	10	Unmodified	_AEILGLPSPP_					0	0	0			REV__ENSG00000050030|ENST00000055682|NEXMIF	REV__ENSG00000050030|ENST00000055682|NEXMIF	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.2612609863281	2	497.2844	992.554247	-0.50851	-0.00025288	-1.8229	-0.00090648	-2.3314	-0.0011594	497.2831111591909	40.567	0.41705	40.567	40.294	40.711	0					13	8	2	0	0	0	0.026915	1	2466	2466		35.618	0	1	123720	+		348	16682	252	252	476	476					0.05767224728754172
AEILKILSE	9	Unmodified	_AEILKILSE_					0	0	0		ENSG00000140015|ENST00000322893|KCNH5	ENSG00000140015|ENST00000322893|KCNH5	ENSG00000140015|ENST00000322893|KCNH5	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.8175048828125	2	508.305332	1014.59611	0.093183	4.7365E-05	-2.8822	-0.001465	-2.789	-0.0014177	508.30400397372324	31.943	0.44675	31.943	31.807	32.254	0					13	8	3	0	0	0	0.027462	1	1375	1375		31.53	4.8369	1	27611			349	4818	253	253	477	477					0.08939780417279053
AEINEIIRVL	10	Unmodified	_AEINEIIRVL_					0	0	0		VCL-ADK|2|fusion;VCL|p.R832Efs*23|1|0.05|ENSG00000035403|chr10:74107288-74107288|C/-|frameshift_variant;VCL-ADK|1|fusion;VCL-ADK|4|fusion;nc|ENSG00000035403|P18206-2|VCL;VCL-ADK|13|fusion;ENSG00000035403|ENST00000211998|VCL;nc|ENSG00000035403|P18206-3|VCL;VCL-ADK|12|fusion;VCL-ADK|3|fusion	VCL-ADK|2|fusion	VCL-ADK|2|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.371826171875	2	585.348063	1168.68157	1.5946	0.00093338	0.38392	0.00022473	1.9785	0.0011581	585.3480911403727	126.13	0.46983	126.13	125.9	126.37	0					23	9	4	0	0	0	0.026487	1	14593	14593		68.626	0	1	337260			350	1081	254	254	478	478					0.10397945602949221
AEINNIIKI	9	Unmodified	_AEINNIIKI_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;ENST00000491510.1_1_3:25668659-25671642:-|nuORF;TOP2A-STAU1|1|fusion;TOP2A-STAU1|2|fusion;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-MSMS	OvCa99_classI_Rep5	1	514.3111572265625	2	514.310949	1026.60735	-2.2322	-0.001148	0.61817	0.00031793	-1.614	-0.0008301	514.3110696229978	104.29	0.97487	104.29	103.81	104.79	0					59	20	5	0	0	0	0.021573	1	11676	11676		145.16	5.1852	1	3559500			351	1564;4088	255	255	479	479					0.09510602511409161
AEINNIIKI	9	Unmodified	_AEINNIIKI_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;ENST00000491510.1_1_3:25668659-25671642:-|nuORF;TOP2A-STAU1|1|fusion;TOP2A-STAU1|2|fusion;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	MSMS	OvCa9_classI_Rep2	2	514.311279296875	2	514.310949	1026.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.27	1	103.69	103.19	104.19	-0.57639								0	0	0	0.022462	1	9649	9649		95.815	0	1				352	1564;4088	255	255	480	480					0.09510602511409161
AEINNIIKI	9	Unmodified	_AEINNIIKI_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;ENST00000491510.1_1_3:25668659-25671642:-|nuORF;TOP2A-STAU1|1|fusion;TOP2A-STAU1|2|fusion;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	MSMS	OvCa9_classI_Rep2	2	514.3109130859375	2	514.310949	1026.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.3	1	103.72	103.22	104.22	-0.57639								0	0	0	0.026392	1	9653	9653		120.87	0	1				353	1564;4088	255	255	481	481					0.09510602511409161
AEINNIIKI	9	Unmodified	_AEINNIIKI_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;ENST00000491510.1_1_3:25668659-25671642:-|nuORF;TOP2A-STAU1|1|fusion;TOP2A-STAU1|2|fusion;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	MSMS	OvCa9_classI_Rep2	2	514.3107299804688	2	514.310949	1026.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.35	1	103.77	103.27	104.27	-0.57639								0	0	0	0.027981	1	9659	9659		115.49	0	1				354	1564;4088	255	255	482	482					0.09510602511409161
AEINNIIKI	9	Unmodified	_AEINNIIKI_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;ENST00000491510.1_1_3:25668659-25671642:-|nuORF;TOP2A-STAU1|1|fusion;TOP2A-STAU1|2|fusion;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	MSMS	OvCa9_classI_Rep2	2	514.3104248046875	2	514.310949	1026.60735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.4	1	103.82	103.32	104.32	-0.57639								0	0	0	0.028307	1	9665	9665		90.601	5.44	1				355	1564;4088	255	255	483	483					0.09510602511409161
AEINNIIKI	9	Unmodified	_AEINNIIKI_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;ENST00000491510.1_1_3:25668659-25671642:-|nuORF;TOP2A-STAU1|1|fusion;TOP2A-STAU1|2|fusion;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-MSMS	OvCa9_classI_Rep3	3	514.3101806640625	2	514.310949	1026.60735	0.77543	0.00039881	-1.0172	-0.00052318	-0.24181	-0.00012437	514.3103043600519	105.05	2.4418	103.7	103	105.44	-1.3482					111	46	4	0	0	0	0.025955	4	7349	7339;7349;7356;7369		139.97	0	1	848940			356	1564;4088	255	255	484;485;486;487	485					0.09510602511409161
AEINNIIKI	9	Unmodified	_AEINNIIKI_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;ENST00000491510.1_1_3:25668659-25671642:-|nuORF;TOP2A-STAU1|1|fusion;TOP2A-STAU1|2|fusion;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.3106079101562	2	514.310949	1026.60735	-0.39593	-0.00020363	-0.0067067	-3.4493E-06	-0.40263	-0.00020708	514.3108139269916	105.69	2.1337	103.67	102.79	104.93	-2.0161					102	41	4	0	0	0	0.025955	4	9614	9591;9602;9614;9628		139.97	0	1	806240			357	1564;4088	255	255	488;489;490;491	490					0.09510602511409161
AEIPAGTIL	9	Unmodified	_AEIPAGTIL_					0	0	0		ENSG00000104356|ENST00000401707|POP1	ENSG00000104356|ENST00000401707|POP1	ENSG00000104356|ENST00000401707|POP1	MULTI-SECPEP	OvCa9_classI_Rep3	3	442.2724914550781	2	442.758018	883.501483	-0.56118	-0.00024847	0.61739	0.00027335	0.056211	2.4888E-05	442.7581623663439	96.253	1.6259	94.424	94.027	95.652	-1.8286					63	31	3	0	0	0	0.027326	1	6428	6428		65.803	5.5092	1	284610			358	2369	256	256	492	492					0.05507266665961197
AEIRALYAF	9	Unmodified	_AEIRALYAF_					0	0	0		ENSG00000183196|ENST00000332272|CHST6;ENSG00000135702|ENST00000336257|CHST5;nc|ENSG00000135702|Q9GZS9-2|CHST5	ENSG00000183196|ENST00000332272|CHST6	ENSG00000183196|ENST00000332272|CHST6	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.29150390625	2	527.290017	1052.56548	-0.00046032	-2.4272E-07	-0.12553	-6.619E-05	-0.12599	-6.6433E-05	527.2898369129812	96.553	1.0016	94.127	93.862	94.863	-2.4256					34	19	2	0	0	0	0.35444	1	8532	8532		56.721	10.769	1	211600			359	4404	257	257	493	493					0.04130046822865552
AEIRALYAF	9	Unmodified	_AEIRALYAF_					0	0	0		ENSG00000183196|ENST00000332272|CHST6;ENSG00000135702|ENST00000336257|CHST5;nc|ENSG00000135702|Q9GZS9-2|CHST5	ENSG00000183196|ENST00000332272|CHST6	ENSG00000183196|ENST00000332272|CHST6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	527.290017	1052.56548	-0.54907	-0.00028952	0.16682	8.796E-05	-0.38225	-0.00020156	527.2899276896122	95.059	1.0373	94.01	93.705	94.742	-1.0498	-0.085226	-0.0003919	NaN	56.721	40	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167730			360	4404	257	257							0.04130046822865552
AEIRALYAF	9	Unmodified	_AEIRALYAF_					0	0	0		ENSG00000183196|ENST00000332272|CHST6;ENSG00000135702|ENST00000336257|CHST5;nc|ENSG00000135702|Q9GZS9-2|CHST5	ENSG00000183196|ENST00000332272|CHST6	ENSG00000183196|ENST00000332272|CHST6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	527.290017	1052.56548	-1.325	-0.00069866	1.1435	0.00060293	-0.18154	-9.5726E-05	527.290481385244	95.976	0.99741	94.148	93.83	94.827	-1.8286	0.053003	0.00063805	NaN	56.721	37	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217070			361	4404	257	257							0.04130046822865552
AEIRHVLVTL	10	Unmodified	_AEIRHVLVTL_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-MSMS	OvCa99_classI_Rep5	1	575.852294921875	2	575.850773	1149.68699	2.2149	0.0012755	-0.60663	-0.00034933	1.6083	0.00092612	575.8504279408902	84.453	2.134	84.453	84.177	86.311	0					148	51	5	0	0	0	0.013471	3	8836	8807;8836;8867		155.58	72.834	1	57433000			362	1901;14919	258	258	494;495;496	495					0.11813669185426079
AEIRHVLVTL	10	Unmodified	_AEIRHVLVTL_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8517456054688	2	575.850773	1149.68699	0.92745	0.00053407	-2.2317	-0.0012851	-1.3043	-0.00075107	575.8495520130135	87.768	2.7108	86.336	85.642	88.353	-1.4311					213	54	6	0	0	0	0.016395	20	7683	7649;7653;7659;7665;7671;7677;7683;7689;7695;7701;7707;7713;7719;7725;7731;7739;7745;7751;7757;7771		152.06	72.348	1	8722300			363	1901;14919	258	258	497;498;499;500;501;502;503;504;505;506;507;508;509;510;511;512;513;514;515;516	503					0.11813669185426079
AEIRHVLVTL	10	Unmodified	_AEIRHVLVTL_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8512573242188	2	575.850773	1149.68699	-1.1027	-0.00063501	-0.13499	-7.7737E-05	-1.2377	-0.00071275	575.8507452435357	88.816	2.3053	86.685	86.315	88.62	-2.1309					208	45	7	0	0	0	0.0091683	25	5405	5399;5405;5410;5416;5422;5428;5434;5440;5446;5452;5458;5464;5471;5477;5483;5489;5497;5502;5507;5513;5519;5525;5532;5538;5545		160.82	65.215	1	12018000			364	1901;14919	258	258	517;518;519;520;521;522;523;524;525;526;527;528;529;530;531;532;533;534;535;536;537;538;539;540;541	518					0.11813669185426079
AEIRHVLVTL	10	Unmodified	_AEIRHVLVTL_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8521118164062	2	575.850773	1149.68699	-0.40046	-0.00023061	-0.69571	-0.00040063	-1.0962	-0.00063123	575.85040348734	89.207	2.3616	86.605	86.286	88.648	-2.6027					202	46	6	0	0	0	0.023817	15	7668	7622;7632;7644;7656;7668;7680;7692;7705;7718;7730;7742;7753;7767;7779;7792		143.37	58.199	1	10168000			365	1901;14919	258	258	542;543;544;545;546;547;548;549;550;551;552;553;554;555;556	546					0.11813669185426079
AEIRVGSAAL	10	Unmodified	_AEIRVGSAAL_					0	0	0			REV__tr|A0A7D6VSW1|A0A7D6VSW1_9CLOTDNAtranslocaseFtsKOS=ClostridiumintestinaleOX=36845GN=HZF06_10740PE=3SV=1	REV__tr|A0A7D6VSW1|A0A7D6VSW1_9CLOTDNAtranslocaseFtsKOS=ClostridiumintestinaleOX=36845GN=HZF06_10740PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	493.7872619628906	2	493.785099	985.555644	-0.2692	-0.00013293	3.7452	0.0018493	3.476	0.0017164	493.7867393201552	121.47	1.3357	121.27	120.95	122.29	-0.19718					61	26	3	0	0	0	0.39172	1	11724	11724		69.628	6.3214	1	176810	+		366	31547	259	259	557	557					0.06228858817530636
AEIRYQEE	8	Unmodified	_AEIRYQEE_					0	0	0			REV__ENSG00000135976|ENST00000420699|ANKRD36	REV__ENSG00000135976|ENST00000420699|ANKRD36	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.30908203125	2	519.248546	1036.48254	-0.29752	-0.00015449	-1.3947	-0.00072422	-1.6923	-0.0008787	519.7475421255624	61.929	0.28449	58.471	58.382	58.667	-3.4577					6	5	2	0	0	0	0.028476	1	4287	4287		45.952	5.3793	1	30725	+		367	19345	260	260	558	558					-0.034243146957578574
AEISNGRDP	9	Unmodified	_AEISNGRDP_					0	0	0			REV__ENSG00000215421|ENST00000299687|ZNF407	REV__ENSG00000215421|ENST00000299687|ZNF407	MULTI-MSMS	OvCa99_classI_Rep5	1	479.7367248535156	2	479.733063	957.451573	2.3183	0.0011122	4.4295	0.002125	6.7478	0.0032372	479.73505923164066	95.17	0.70975	95.17	94.905	95.615	0					41	16	4	0	0	0	0.083631	1	10374	10374		101.6	22.15	1	1939000	+		368	23316	261	261	559	559					-0.028854680099925645
AEITDKLGL	9	Unmodified	_AEITDKLGL_					0	0	0		nc|ENSG00000134287|P61204-2|ARF3;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3;ENST00000444561.2_1_17:43710417-43713807:+|nuORF;ENST00000470670.5_1_1:228284963-228285711:+|nuORF	nc|ENSG00000134287|P61204-2|ARF3;ENST00000470670.5_1_1:228284963-228285711:+|nuORF	nc|ENSG00000134287|P61204-2|ARF3	MULTI-MSMS	OvCa99_classI_Rep5	1	480.2752685546875	2	480.274032	958.533512	2.2025	0.0010578	-0.18123	-8.7039E-05	2.0213	0.00097077	480.274001189228	92.824	1.5364	92.824	92.515	94.051	0					79	36	4	0	0	0	0.0087163	2	10066	10036;10066		209.84	28.914	1	56205000			369	4277;12368	262	262	560;561	561					0.05258634349092972
AEITDKLGL	9	Unmodified	_AEITDKLGL_					0	0	0		nc|ENSG00000134287|P61204-2|ARF3;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3;ENST00000444561.2_1_17:43710417-43713807:+|nuORF;ENST00000470670.5_1_1:228284963-228285711:+|nuORF	nc|ENSG00000134287|P61204-2|ARF3;ENST00000470670.5_1_1:228284963-228285711:+|nuORF	nc|ENSG00000134287|P61204-2|ARF3	MULTI-MSMS	OvCa9_classI_Rep2	2	480.2728271484375	2	480.274032	958.533512	-0.614	-0.00029489	0.42988	0.00020646	-0.18412	-8.8428E-05	480.2741379526989	94.27	1.7097	93.171	92.487	94.197	-1.0995					78	33	3	0	0	0	0.024645	3	8431	8431;8436;8442		141.52	26.026	1	552270			370	4277;12368	262	262	562;563;564	562					0.05258634349092972
AEITDKLGL	9	Unmodified	_AEITDKLGL_					0	0	0		nc|ENSG00000134287|P61204-2|ARF3;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3;ENST00000444561.2_1_17:43710417-43713807:+|nuORF;ENST00000470670.5_1_1:228284963-228285711:+|nuORF	nc|ENSG00000134287|P61204-2|ARF3;ENST00000470670.5_1_1:228284963-228285711:+|nuORF	nc|ENSG00000134287|P61204-2|ARF3	MULTI-MSMS	OvCa9_classI_Rep3	3	480.2745056152344	2	480.274032	958.533512	-0.25819	-0.000124	0.092774	4.4557E-05	-0.16541	-7.9444E-05	480.2740025164239	94.935	1.8458	93.039	92.358	94.204	-1.8956					93	36	4	0	0	0	0.014622	3	6163	6158;6163;6169		154.12	26.657	1	1018700			371	4277;12368	262	262	565;566;567	566					0.05258634349092972
AEITDKLGL	9	Unmodified	_AEITDKLGL_					0	0	0		nc|ENSG00000134287|P61204-2|ARF3;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3;ENST00000444561.2_1_17:43710417-43713807:+|nuORF;ENST00000470670.5_1_1:228284963-228285711:+|nuORF	nc|ENSG00000134287|P61204-2|ARF3;ENST00000470670.5_1_1:228284963-228285711:+|nuORF	nc|ENSG00000134287|P61204-2|ARF3	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.274658203125	2	480.274032	958.533512	-1.1801	-0.00056679	0.84015	0.0004035	-0.33999	-0.00016329	480.2743460661196	95.508	1.7683	93.04	92.46	94.229	-2.4685					85	34	3	0	0	0	0.051592	3	8403	8394;8403;8442		117.81	13.754	1	1062900			372	4277;12368	262	262	568;569;570	569					0.05258634349092972
AEIVKEGSVL	10	Unmodified	_AEIVKEGSVL_					0	0	0		NUP153|p.L603V|1|0.04|ENSG00000124789|chr6:17639978-17639978|G/C|missense_variant	NUP153|p.L603V|1|0.04|ENSG00000124789|chr6:17639978-17639978|G/C|missense_variant	NUP153|p.L603V|1|0.04|ENSG00000124789|chr6:17639978-17639978|G/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.8248291015625	2	522.800414	1043.58628	-1.2166	-0.00063605	-0.74094	-0.00038737	-1.9576	-0.0010234	523.3010027930159	81.498	0.44024	78.788	78.641	79.081	-2.7106					12	8	2	0	0	0	0.026464	1	6721	6721		60.118	0	1	16128			373	15444	263	263	571	571					0.06622592411918049
AEKAGLNPDN	10	Unmodified	_AEKAGLNPDN_					0	0	0		tr|A0A553SPJ3|A0A553SPJ3_NIACINAD(P)-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_26335PE=4SV=1	tr|A0A553SPJ3|A0A553SPJ3_NIACINAD(P)-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_26335PE=4SV=1	tr|A0A553SPJ3|A0A553SPJ3_NIACINAD(P)-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_26335PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.820068359375	2	514.753995	1027.49344	2.2612	0.001164	3.9859	0.0020518	6.2471	0.0032157	514.7559554874396	80.312	0.54083	80.312	80.074	80.615	0					24	12	3	0	0	0	0.026544	1	8272	8272		66.962	1.1587	1	553070			374	34051	264	264	572	572					-0.019209123214750434
AEKAGLNPDN	10	Unmodified	_AEKAGLNPDN_					0	0	0		tr|A0A553SPJ3|A0A553SPJ3_NIACINAD(P)-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_26335PE=4SV=1	tr|A0A553SPJ3|A0A553SPJ3_NIACINAD(P)-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_26335PE=4SV=1	tr|A0A553SPJ3|A0A553SPJ3_NIACINAD(P)-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_26335PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.753995	1027.49344	0.55107	0.00028367	9.4027	0.0048401	9.9538	0.0051237	515.2610699527379	81.978	1.1935	80.329	79.767	80.961	-1.6485	0.10284	0.0051857	NaN	66.962	33	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69326			375	34051	264	264							-0.019209123214750434
AEKAGLNPDN	10	Unmodified	_AEKAGLNPDN_					0	0	0		tr|A0A553SPJ3|A0A553SPJ3_NIACINAD(P)-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_26335PE=4SV=1	tr|A0A553SPJ3|A0A553SPJ3_NIACINAD(P)-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_26335PE=4SV=1	tr|A0A553SPJ3|A0A553SPJ3_NIACINAD(P)-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_26335PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	514.753995	1027.49344	-0.48477	-0.00024954	3.5182	0.001811	3.0334	0.0015615	514.7556258146295	82.334	0.59702	80.038	79.735	80.332	-2.2963	-0.1882	-0.00087249	NaN	66.962	18	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50399			376	34051	264	264							-0.019209123214750434
AEKAVTKEEF	10	Unmodified	_AEKAVTKEEF_					0	0	0		ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA	ENST00000478027.2_1_3:39450050-39453856:+|nuORF	ENST00000478027.2_1_3:39450050-39453856:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	576.3009033203125	2	576.300778	1150.587	-1.0434	-0.00060129	0.83682	0.00048226	-0.20654	-0.00011903	576.3011058911346	46.232	1.2388	43.522	43.25	44.489	-2.7097					69	24	4	0	0	0	0.20001	2	2747	2747;2753		94.409	30.875	1	340680			377	6866	265	265	573;574	573					0.01773387060939058
AEKAVTKEEF	10	Unmodified	_AEKAVTKEEF_					0	0	0		ENST00000478027.2_1_3:39450050-39453856:+|nuORF;nc|ENSG00000288920|A0A8I5KQE6|RPSA2;ENSG00000168028|ENST00000301821|RPSA	ENST00000478027.2_1_3:39450050-39453856:+|nuORF	ENST00000478027.2_1_3:39450050-39453856:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	576.302490234375	2	576.300778	1150.587	-0.8869	-0.00051112	0.75514	0.00043519	-0.13176	-7.5932E-05	576.3011342401386	46.599	1.6338	43.526	43.189	44.823	-3.0724					92	31	5	0	0	0	0.037145	4	2455	2446;2455;2468;2482		133.75	37.883	1	1487700			378	6866	265	265	575;576;577;578	576					0.01773387060939058
AEKAYHEQL	9	Unmodified	_AEKAYHEQL_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENSG00000183785|ENST00000330423|TUBA8;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENST00000437364.2_1_1:47358067-47358181:+|nuORF;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000167552|ENST00000301071|TUBA1A	MULTI-MSMS	OvCa99_classI_Rep5	1	544.7714233398438	2	544.772188	1087.52982	-0.81074	-0.00044167	-0.27434	-0.00014945	-1.0851	-0.00059112	544.7720371289383	37.507	1.1853	37.507	37.069	38.254	0					101	25	7	0	0	0	0.033166	2	2047	2047;2068		132.76	38.546	1	13054000			379	3593;6805;6806	266	266	579;580	579					-0.010440354247748473
AEKAYHEQL	9	Unmodified	_AEKAYHEQL_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENSG00000183785|ENST00000330423|TUBA8;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENST00000437364.2_1_1:47358067-47358181:+|nuORF;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000167552|ENST00000301071|TUBA1A	MULTI-MSMS	OvCa9_classI_Rep2	2	544.7716064453125	2	544.772188	1087.52982	0.58838	0.00032053	-0.95956	-0.00052274	-0.37118	-0.00020221	544.7716121580505	42.458	1.4825	39.749	39.522	41.005	-2.7097					77	29	4	0	0	0	0.075618	10	2289	2283;2289;2295;2301;2307;2313;2319;2325;2332;2339		104.01	16.317	1	940130			380	3593;6805;6806	266	266	581;582;583;584;585;586;587;588;589;590	582					-0.010440354247748473
AEKAYHEQL	9	Unmodified	_AEKAYHEQL_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENSG00000183785|ENST00000330423|TUBA8;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENST00000437364.2_1_1:47358067-47358181:+|nuORF;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000167552|ENST00000301071|TUBA1A	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.7724609375	2	544.772188	1087.52982	-1.4896	-0.00081152	0.77669	0.00042312	-0.71296	-0.0003884	544.7726136060659	42.731	1.9065	39.723	39.486	41.393	-3.0074					93	36	4	0	0	0	0.034473	7	2017	1995;2005;2017;2029;2041;2054;2081		131.62	33.034	1	4237400			381	3593;6805;6806	266	266	591;592;593;594;595;596;597	593					-0.010440354247748473
AEKEILEKGK	10	Unmodified	_AEKEILEKGK_					0	0	0			REV__tr|A0A7D6VP34|A0A7D6VP34_9CLOTGTPdiphosphokinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15075PE=3SV=1	REV__tr|A0A7D6VP34|A0A7D6VP34_9CLOTGTPdiphosphokinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15075PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	572.316162109375	2	572.832246	1143.64994	-0.91945	-0.00052669	-0.18863	-0.00010806	-1.1081	-0.00063475	572.8322236924704	95.722	1.533	94.694	94.367	95.9	-1.0281					73	30	3	0	0	0	0.026548	1	8644	8644		54.722	15.47	1	764460	+		382	31225	267	267	598	598					0.08385952848993838
AEKELVQSL	9	Unmodified	_AEKELVQSL_					0	0	0		ENST00000478055.1_1_5:131553347-131562829:-|nuORF;ENSG00000072682|ENST00000360568|P4HA2;nc|ENSG00000072682|O15460|P4HA2	ENST00000478055.1_1_5:131553347-131562829:-|nuORF	ENST00000478055.1_1_5:131553347-131562829:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	508.7864074707031	2	508.784764	1015.55498	-0.1507	-7.6672E-05	0.034705	1.7657E-05	-0.11599	-5.9015E-05	508.7846474646973	73.069	0.91303	73.069	72.804	73.717	0					44	22	3	0	0	0	0.023079	1	7153	7153		143.37	15.912	1	4810800			383	1477	268	268	599	599					0.04782019377796587
AEKFAAEK	8	Unmodified	_AEKFAAEK_					0	0	0			REV__tr|A0A553SUN1|A0A553SUN1_NIACIPhosphatasePAP2familyproteinOS=NialliacirculansOX=1397GN=CEQ21_03285PE=4SV=1	REV__tr|A0A553SUN1|A0A553SUN1_NIACIPhosphatasePAP2familyproteinOS=NialliacirculansOX=1397GN=CEQ21_03285PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	447.24102783203125	2	447.239993	892.465432	0.21712	9.7105E-05	-0.14694	-6.572E-05	0.070176	3.1386E-05	447.2397933722276	55.619	0.81961	55.619	55.358	56.178	0					53	19	4	0	0	0	0.17036	1	4552	4552		129.68	0	1	8176600	+		384	31098	269	269	600	600					0.014898094890895663
AEKFPVISV	9	Unmodified	_AEKFPVISV_					0	0	0		nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	MULTI-MSMS	OvCa9_classI_Rep2	2	495.2872314453125	2	495.286943	988.559333	-0.86687	-0.00042935	-0.43262	-0.00021427	-1.2995	-0.00064362	495.2870763482212	102.1	1.7794	101.34	100.82	102.6	-0.76094					67	35	4	0	0	0	0.1149	1	9391	9391		93.143	13.431	1	435190			385	7791	270	270	601	601					0.06459528591381059
AEKFPVISV	9	Unmodified	_AEKFPVISV_					0	0	0		nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	MULTI-MSMS	OvCa9_classI_Rep3	3	495.2875671386719	2	495.286943	988.559333	-0.41278	-0.00020444	-1.9784	-0.00097985	-2.3911	-0.0011843	495.28679410952253	102.81	1.4149	101.29	101	102.41	-1.5211					65	26	4	0	0	0	0.070405	1	7094	7094		107.01	13.812	1	557590			386	7791	270	270	602	602					0.06459528591381059
AEKFPVISV	9	Unmodified	_AEKFPVISV_					0	0	0		nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.2880859375	2	495.286943	988.559333	-0.37964	-0.00018803	-1.8145	-0.00089867	-2.1941	-0.0010867	495.2868711330298	103.48	1.4653	101.36	101.07	102.53	-2.1192					65	27	4	0	0	0	0.060996	1	9345	9345		112.41	30.17	1	480020			387	7791	270	270	603	603					0.06459528591381059
AEKHEKRKEEI	11	Unmodified	_AEKHEKRKEEI_					0	0	0			REV__ENSG00000085760|ENST00000263629|MTIF2	REV__ENSG00000085760|ENST00000263629|MTIF2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	467.25469970703125	3	466.256285	1395.74703	-0.941	-0.00043875	-3.046	-0.0014202	-3.987	-0.001859	466.25483466566214	55.516	0.50693	52.222	51.957	52.464	-3.2944					16	9	2	0	0	0	0.025864	1	3502	3502		28.577	17.48	1	28334	+		388	17140	271	271	604	604					0.06498315058024673
AEKLDEIYV	9	Unmodified	_AEKLDEIYV_					0	0	0		nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-MSMS	OvCa9_classI_Rep2	2	540.2839965820312	2	540.284597	1078.55464	0.71701	0.00038739	-1.2064	-0.00065182	-0.48943	-0.00026443	540.2838474213934	90.927	1.6026	89.692	89.143	90.746	-1.2355					68	30	3	0	0	0	0.17606	3	8063	8047;8058;8063		80.455	23.734	1	527920			389	4365	272	272	605;606;607	607					0.018505996579506245
AEKLDEIYV	9	Unmodified	_AEKLDEIYV_					0	0	0		nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-MSMS	OvCa9_classI_Rep3	3	540.2855834960938	2	540.284597	1078.55464	-0.32528	-0.00017574	-0.3772	-0.00020379	-0.70247	-0.00037954	540.284316762095	91.583	1.0289	89.559	89.332	90.361	-2.0241					50	20	3	0	0	0	0.26076	3	5747	5744;5747;5774		67.494	17.506	1	1170800			390	4365	272	272	608;609;610	609					0.018505996579506245
AEKLDEIYV	9	Unmodified	_AEKLDEIYV_					0	0	0		nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.2858276367188	2	540.284597	1078.55464	-1.4173	-0.00076575	1.0049	0.00054296	-0.41236	-0.00022279	540.2850976781742	92.085	1.1145	89.542	89.313	90.427	-2.5425					56	21	3	0	0	0	0.26076	2	7987	7987;7999		67.494	12.729	1	1077100			391	4365	272	272	611;612	611					0.018505996579506245
AEKLGGSAVI	10	Unmodified	_AEKLGGSAVI_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65622809-65623088:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	OvCa9_classI_Rep2	2	472.7743835449219	2	472.7742	943.533846	-0.37011	-0.00017498	0.13698	6.4758E-05	-0.23313	-0.00011022	472.7741276792271	69.709	2.1265	67.139	66.615	68.741	-2.5707					121	41	5	0	0	0	0.1266	2	5545	5545;5550		106.88	10.847	1	732550			392	7317	273	273	613;614	613					0.059820540689429436
AEKLGGSAVI	10	Unmodified	_AEKLGGSAVI_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65622809-65623088:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.7750549316406	2	472.7742	943.533846	-0.010424	-4.928E-06	-0.27158	-0.0001284	-0.28201	-0.00013333	472.77396931404974	70.587	2.1373	67.106	66.787	68.924	-3.4812					124	43	5	0	0	0	0.10517	6	5335	5324;5335;5348;5363;5375;5387		112.3	15.598	1	3157000			393	7317	273	273	615;616;617;618;619;620	616					0.059820540689429436
AEKLITQTF	9	Unmodified	_AEKLITQTF_					0	0	0		ARID1A-NUDC|2|fusion;ENSG00000090273|ENST00000321265|NUDC	ARID1A-NUDC|2|fusion	ARID1A-NUDC|2|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	525.7955322265625	2	525.795132	1049.57571	-1.7259	-0.00090747	0.97326	0.00051174	-0.75265	-0.00039574	525.7955106256957	85.103	2.625	83.557	83.001	85.626	-1.5462					132	51	4	0	0	0	0.0070154	8	7368	7330;7336;7342;7348;7355;7361;7368;7374		186.41	68.6	1	1001500			394	113	274	274	621;622;623;624;625;626;627;628	627					0.05290609757457787
AEKLITQTF	9	Unmodified	_AEKLITQTF_					0	0	0		ARID1A-NUDC|2|fusion;ENSG00000090273|ENST00000321265|NUDC	ARID1A-NUDC|2|fusion	ARID1A-NUDC|2|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	525.7964477539062	2	525.795132	1049.57571	-1.6249	-0.00085434	1.0914	0.00057387	-0.53342	-0.00028047	525.7956173331157	85.73	2.8766	83.51	82.888	85.765	-2.2204					165	56	6	0	0	0	0.0073712	10	5044	5040;5044;5050;5057;5063;5071;5076;5082;5089;5096		195.05	71.287	1	1801200			395	113	274	274	629;630;631;632;633;634;635;636;637;638	630					0.05290609757457787
AEKLITQTF	9	Unmodified	_AEKLITQTF_					0	0	0		ARID1A-NUDC|2|fusion;ENSG00000090273|ENST00000321265|NUDC	ARID1A-NUDC|2|fusion	ARID1A-NUDC|2|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.7964477539062	2	525.795132	1049.57571	0.6137	0.00032268	-1.5569	-0.00081863	-0.94324	-0.00049595	525.7942192747249	86.26	1.9437	83.614	83.091	85.035	-2.6463					97	38	3	0	0	0	0.0083283	5	7279	7279;7290;7303;7315;7330		204.79	77.326	1	2080300			396	113	274	274	639;640;641;642;643	639					0.05290609757457787
AEKNEDLAI	9	Unmodified	_AEKNEDLAI_					0	0	0			REV__nc|ENSG00000257335|O43451-1|MGAM	REV__nc|ENSG00000257335|O43451-1|MGAM	MULTI-MSMS	OvCa9_classI_Rep2	2	501.7589111328125	2	501.758746	1001.50294	-1.2873	-0.00064594	1.1231	0.00056355	-0.16421	-8.2392E-05	501.7592933844178	69.011	1.5923	66.391	65.77	67.362	-2.6203					59	31	2	0	0	0	0.34132	1	5484	5484		58.23	0.41864	1	925860	+		397	23546	275	275	644	644					0.002248559640406711
AEKNKSDKN	9	Unmodified	_AEKNKSDKN_					0	0	0			REV__tr|A0A553SFF7|A0A553SFF7_NIACISugarABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_08795PE=4SV=1	REV__tr|A0A553SFF7|A0A553SFF7_NIACISugarABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_08795PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	516.8265380859375	2	517.26727	1032.51999	-0.18165	-9.3961E-05	1.1316	0.00058533	0.94993	0.00049137	517.2670540919398	94.327	0.50906	92.431	92.102	92.612	-1.8956					14	9	3	0	0	0	0.027447	1	6095	6095		31.53	3.6476	1	20826	+		398	29573	276	276	645	645					0.005027765698514486
AEKPTACRL	9	Unmodified	_AEKPTACRL_					0	0	0		ENST00000378024.8_2_11:62284032-62284200:-|nuORF	ENST00000378024.8_2_11:62284032-62284200:-|nuORF	ENST00000378024.8_2_11:62284032-62284200:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.76715087890625	2	494.765852	987.51715	-0.031227	-1.545E-05	-0.80136	-0.00039649	-0.83259	-0.00041194	494.76553107709896	58.028	1.6628	54.683	54.189	55.852	-3.3449					62	32	3	0	0	0	0.33652	1	3815	3815		58.782	3.2778	1	199470			399	11097	277	277	646	646					0.022892299113323133
AEKREHEKEVL	11	Unmodified	_AEKREHEKEVL_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF;nc|ENSG00000117632|P16949-2|STMN1;ENST00000485226.1_1_1:26227942-26230296:-|nuORF	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	OvCa99_classI_Rep5	1	456.5808410644531	3	456.580769	1366.72048	-0.75746	-0.00034584	-0.00032616	-1.4892E-07	-0.75779	-0.00034599	456.5808028026354	28.016	1.3955	28.016	27.791	29.186	0					74	27	6	0	0	0	0.41331	1	892	892		60.167	19.087	1	4052500			400	3269	278	278	647	647					0.0517862616666207
AEKREHEKEVL	11	Unmodified	_AEKREHEKEVL_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF;nc|ENSG00000117632|P16949-2|STMN1;ENST00000485226.1_1_1:26227942-26230296:-|nuORF	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.58074951171875	3	456.580769	1366.72048	0.035569	1.624E-05	-0.36787	-0.00016796	-0.3323	-0.00015172	456.58058235023054	21.709	1.5452	20.371	20.017	21.562	-1.3386					108	32	6	0	0	0	0.36853	4	193	183;193;204;217		63.426	14.825	1	887710			401	3269	278	278	648;649;650;651	649					0.0517862616666207
AEKRIKWVPI	10	Unmodified	_AEKRIKWVPI_					0	0	0			REV__ENST00000512692.6_1_4:141290499-141294498:-|nuORF	REV__ENST00000512692.6_1_4:141290499-141294498:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	413.9230041503906	3	413.923919	1238.74993	0.26902	0.00011136	-3.5639	-0.0014752	-3.2948	-0.0013638	413.9224547119415	58.292	1.633	55.5	55.122	56.755	-2.792					103	31	5	0	0	0	0.6349	1	4200	4200		37.812	1.3648	1	599060	+		402	26972	279	279	652	652					0.1401023497346614
AEKTSKELRSR	11	Unmodified	_AEKTSKELRSR_					0	0	0		tr|A0A553SI27|A0A553SI27_NIACIThiolreductantABCexportersubunitCydDOS=NialliacirculansOX=1397GN=cydDPE=4SV=1	tr|A0A553SI27|A0A553SI27_NIACIThiolreductantABCexportersubunitCydDOS=NialliacirculansOX=1397GN=cydDPE=4SV=1	tr|A0A553SI27|A0A553SI27_NIACIThiolreductantABCexportersubunitCydDOS=NialliacirculansOX=1397GN=cydDPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	435.5774230957031	3	435.58088	1303.72081	-3.9701	-0.0017293	-3.6639	-0.0015959	-7.634	-0.0033252	435.57922182732636	156.17	0.67278	155.94	155.7	156.37	-0.22696					41	19	3	0	0	0	0.72511	1	15885	15885		14.086	0.57807	1	23638			403	33337	280	280	653	653					0.08110045886496664
AEKVEIATL	9	Unmodified	_AEKVEIATL_					0	0	0		ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	MULTI-MSMS	OvCa99_classI_Rep5	1	487.2843017578125	2	487.281857	972.549162	0.87764	0.00042766	1.5508	0.00075566	2.4284	0.0011833	487.28240739391737	81.016	0.71129	81.016	80.702	81.413	0					43	16	4	0	0	0	0.051592	2	8322	8322;8348		117.81	21.808	1	4694500			404	1118	281	281	654;655	654					0.06178920866148019
AEKVEIATL	9	Unmodified	_AEKVEIATL_					0	0	0		ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	MULTI-MSMS	OvCa9_classI_Rep2	2	487.2809753417969	2	487.281857	972.549162	0.57338	0.0002794	-1.0472	-0.00051029	-0.47384	-0.0002309	487.28128527694923	82.678	1.4366	81.08	80.436	81.872	-1.5989					86	28	4	0	0	0	0.010153	9	7057	7027;7032;7036;7043;7050;7057;7061;7068;7075		168.26	53.031	1	988310			405	1118	281	281	656;657;658;659;660;661;662;663;664	661					0.06178920866148019
AEKVEIATL	9	Unmodified	_AEKVEIATL_					0	0	0		ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	MULTI-MSMS	OvCa9_classI_Rep3	3	487.2833251953125	2	487.281857	972.549162	-1.4486	-0.00070585	0.82596	0.00040248	-0.62259	-0.00030338	487.2822933711793	83.052	1.5107	80.756	80.381	81.892	-2.2963					96	31	6	0	0	0	0.0072874	8	4733	4710;4715;4721;4727;4733;4741;4748;4755		204.62	71.287	1	2580400			406	1118	281	281	665;666;667;668;669;670;671;672	669					0.06178920866148019
AEKVEIATL	9	Unmodified	_AEKVEIATL_					0	0	0		ENSG00000041357|ENST00000044462|PSMA4;nc|ENSG00000041357|P25789-2|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.2826843261719	2	487.281857	972.549162	0.19642	9.5713E-05	-0.75112	-0.00036601	-0.5547	-0.0002703	487.2814411534872	83.594	1.3786	80.932	80.583	81.961	-2.6629					78	28	4	0	0	0	0.0086667	5	6955	6944;6955;6967;6980;6995		209.19	74.384	1	2024100			407	1118	281	281	673;674;675;676;677	674					0.06178920866148019
AEKVRLLSE	9	Unmodified	_AEKVRLLSE_					0	0	0			REV__nc|ENSG00000089177|Q96L93-6|KIF16B	REV__nc|ENSG00000089177|Q96L93-6|KIF16B	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.7785034179688	2	522.806031	1043.59751	-0.68849	-0.00035995	-0.068191	-3.5651E-05	-0.75669	-0.0003956	522.8058947399102	35.73	0.83094	35.73	35.52	36.351	0					37	17	4	0	0	0	0.027448	1	1822	1822		27.882	4.8398	1	1239100	+		408	17202	282	282	678	678					0.07745414506075576
AELAALEFPP	10	Unmodified	_AELAALEFPP_					0	0	0		nc|ENSG00000089177|Q96L93-5|KIF16B;nc|ENSG00000089177|Q96L93-6|KIF16B;ENSG00000089177|ENST00000354981|KIF16B	nc|ENSG00000089177|Q96L93-5|KIF16B	nc|ENSG00000089177|Q96L93-5|KIF16B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.8181762695312	2	529.281857	1056.54916	-1.0593	-0.00056065	-0.78922	-0.00041772	-1.8485	-0.00097837	529.2814926044008	117.09	1.2471	115.73	114.99	116.24	-1.3645					30	23	2	0	0	0	0.027056	1	10865	10865		14.865	0	1	17292			409	1815	283	283	679	679					0.023149208661379816
AELAEELCEL	10	Unmodified	_AELAEELCEL_					0	0	0			REV__nc|ENSG00000079931|Q6UVY6-2|MOXD1	REV__nc|ENSG00000079931|Q6UVY6-2|MOXD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.8046264648438	2	560.265547	1118.51654	1.7759	0.00099498	-4.3801	-0.002454	-2.6042	-0.0014591	560.2626319691715	144.91	0.72659	144.91	144.5	145.23	0					27	14	3	0	0	0	0.026606	1	16912	16912		52.937	0	1	57174	+		410	17047	284	284	680	680					-0.0379765431900978
AELANRWLKE	10	Unmodified	_AELANRWLKE_					0	0	0			REV__ENSG00000156413|ENST00000318336|FUT6	REV__ENSG00000156413|ENST00000318336|FUT6	MULTI-SECPEP	OvCa99_classI_Rep5	1	615.3108520507812	2	615.335487	1228.65642	1.6092	0.00099019	-1.2607	-0.00077575	0.3485	0.00021444	615.3345129308921	127.02	0.62945	127.02	126.69	127.32	0					25	13	3	0	0	0	0.026694	1	14713	14713		32.751	0	1	522680	+		411	20476	285	285	681	681					0.05123890800382469
AELCQAEPE	9	Unmodified	_AELCQAEPE_					0	0	0		ENSG00000115596|ENST00000233948|WNT6	ENSG00000115596|ENST00000233948|WNT6	ENSG00000115596|ENST00000233948|WNT6	MULTI-SECPEP	OvCa9_classI_Rep3	3	495.2982482910156	2	495.215857	988.417161	-0.58561	-0.00029	-0.85537	-0.00042359	-1.441	-0.00071359	495.215610516332	89.149	0.24578	87.018	86.798	87.044	-2.1309					5	4	2	0	0	0	0.027402	1	5448	5448		66.429	0.6261	1	3999.9			412	3111	286	286	682	682					-0.07751052213120602
AELEAGFLAI	10	Unmodified	_AELEAGFLAI_					0	0	0		tr|A0A553SLB4|A0A553SLB4_NIACIDynaminN-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20320PE=4SV=1	tr|A0A553SLB4|A0A553SLB4_NIACIDynaminN-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20320PE=4SV=1	tr|A0A553SLB4|A0A553SLB4_NIACIDynaminN-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20320PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.2820434570312	2	517.281857	1032.54916	1.0061	0.00052044	-0.91045	-0.00047096	0.095649	4.9477E-05	517.2812284083195	139.48	1.0755	137.98	137.73	138.81	-1.4952					50	20	4	0	0	0	0.58282	1	13587	13587		44.117	0	1	103460			413	33708	287	287	683	683					0.034189208661246084
AELEISPDL	9	Unmodified	_AELEISPDL_					0	0	0		FAM180A|p.R160Mfs*6|1|0.05|ENSG00000189320|chr7:135734018-135734019|-/CAACA|frameshift_variant;ENSG00000189320|ENST00000338588|FAM180A	FAM180A|p.R160Mfs*6|1|0.05|ENSG00000189320|chr7:135734018-135734019|-/CAACA|frameshift_variant	FAM180A|p.R160Mfs*6|1|0.05|ENSG00000189320|chr7:135734018-135734019|-/CAACA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.7970275878906	2	493.755672	985.496792	-0.018052	-8.9133E-06	3.4723	0.0017145	3.4543	0.0017056	493.75711708321035	101.82	0.34583	101.82	101.65	102	0					11	7	2	0	0	0	0.027456	1	11345	11345		57.811	28.662	1	133620			414	8548	288	288	684	684					0.003463377325374495
AELEKWHL	8	Unmodified	_AELEKWHL_					0	0	0		ENSG00000133789|ENST00000318950|SWAP70	ENSG00000133789|ENST00000318950|SWAP70	ENSG00000133789|ENST00000318950|SWAP70	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.7879028320312	2	513.274367	1024.53418	-2.5086	-0.0012876	-1.8769	-0.00096334	-4.3855	-0.002251	513.273255303899	36.151	0.5928	33.442	33.3	33.893	-2.7097					18	11	2	0	0	0	0.028476	1	1505	1505		40.573	9.0428	1	37681			415	4237	289	289	685	685					0.02289473788800933
AELERESLV	9	Unmodified	_AELERESLV_					0	0	0			REV__nc|ENSG00000214367|Q68CZ6-2|HAUS3	REV__nc|ENSG00000214367|Q68CZ6-2|HAUS3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.3015747070312	2	523.279846	1044.54514	0.89454	0.00046809	0.16684	8.7306E-05	1.0614	0.0005554	523.2798181127282	85.653	0.78345	83.006	82.66	83.443	-2.6463					36	15	3	0	0	0	0.027462	1	7174	7174		26.693	15.182	1	68340	+		416	23290	290	290	686	686					0.02464831372435583
AELERESLV	9	Unmodified	_AELERESLV_					0	0	0			REV__nc|ENSG00000214367|Q68CZ6-2|HAUS3	REV__nc|ENSG00000214367|Q68CZ6-2|HAUS3	MULTI-MATCH	OvCa99_classI_Rep5	1		2	523.279846	1044.54514	1.6637	0.00087057	0.58859	0.000308	2.2523	0.0011786	523.2801648846342	82.815	0.55617	82.815	82.522	83.078	0	-0.096379	-0.00047596	NaN	26.693	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	870590	+		417	23290	290	290							0.02464831372435583
AELERESLV	9	Unmodified	_AELERESLV_					0	0	0			REV__nc|ENSG00000214367|Q68CZ6-2|HAUS3	REV__nc|ENSG00000214367|Q68CZ6-2|HAUS3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	523.279846	1044.54514	-0.98109	-0.00051338	1.6592	0.00086823	0.67812	0.00035485	523.2804925021195	84.52	0.96648	82.974	82.483	83.449	-1.5462	0.06216	0.00064451	NaN	26.693	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35817	+		418	23290	290	290							0.02464831372435583
AELERESLV	9	Unmodified	_AELERESLV_					0	0	0			REV__nc|ENSG00000214367|Q68CZ6-2|HAUS3	REV__nc|ENSG00000214367|Q68CZ6-2|HAUS3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	523.279846	1044.54514	-1.3266	-0.00069418	1.1686	0.00061151	-0.15797	-8.2663E-05	523.28088354394	85.071	1.2855	82.851	82.251	83.536	-2.2204	-0.060703	0.00013107	NaN	26.693	62	25	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101770	+		419	23290	290	290							0.02464831372435583
AELFEEPFV	9	Unmodified	_AELFEEPFV_					0	0	0		ENSG00000070367|ENST00000621441|EXOC5;ENST00000555749.5_1_14:57710864-57735366:-|nuORF;ENST00000554598.5_1_14:57706266-57735366:-|nuORF	ENSG00000070367|ENST00000621441|EXOC5	ENSG00000070367|ENST00000621441|EXOC5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.3469848632812	2	540.76604	1079.51753	-1.5473	-0.00083673	-4.2531	-0.0022999	-5.8004	-0.0031367	541.263579519589	92.608	0.30389	90.101	89.857	90.161	-2.5072					6	5	2	0	0	0	0.027462	1	8044	8044		29.15	8.2026	1	9283.5			420	1425	291	291	687	687					-0.019050718877906547
AELGDEMTDV	10	Unmodified	_AELGDEMTDV_					0	0	0		ENSG00000135632|ENST00000389501|SMYD5	ENSG00000135632|ENST00000389501|SMYD5	ENSG00000135632|ENST00000389501|SMYD5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	539.2720336914062	2	540.231704	1078.44886	-0.17494	-9.451E-05	0.78143	0.00042215	0.60649	0.00032764	540.2316071266778	67.091	0.59377	63.601	63.344	63.938	-3.4902					18	11	2	0	0	0	0.026553	1	4906	4906		56.721	41.856	1	27410			421	4395	292	292	688	688					-0.08723104249838798
AELGRVAIA	9	Unmodified	_AELGRVAIA_					0	0	0			REV__ENST00000522497.1_1_16:69155041-69166435:-|nuORF	REV__ENST00000522497.1_1_16:69155041-69166435:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	450.2692565917969	2	450.269084	898.523616	1.3254	0.0005968	-1.7002	-0.00076554	-0.37475	-0.00016874	450.2680012991639	61.146	3.3168	58.387	57.67	60.987	-2.7593					139	63	5	0	0	0	0.48324	1	4589	4589		44.117	0	1	6706400	+		422	27085	293	293	689	689					0.07029491134369437
AELGRVPFLL	10	Unmodified	_AELGRVPFLL_					0	0	0			REV__ENST00000523421.5_1_16:69155038-69155351:-|nuORF	REV__ENST00000523421.5_1_16:69155038-69155351:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	558.3096923828125	2	557.834591	1113.65463	0.044045	2.457E-05	-0.72099	-0.00040219	-0.67695	-0.00037762	557.8340729147114	87.322	1.1543	84.695	84.349	85.503	-2.6269					52	22	3	0	0	0	0.026891	1	7466	7466		24.519	1.4767	1	208720	+		423	27093	294	294	690	690					0.10234881782434968
AELIDKIK	8	Unmodified	_AELIDKIK_					0	0	0			REV__tr|A0A7D7A424|A0A7D7A424_9CLOTDabbfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01555PE=4SV=1	REV__tr|A0A7D7A424|A0A7D7A424_9CLOTDabbfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01555PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	465.2860107421875	2	465.286943	928.559333	1.3406	0.00062376	-2.0993	-0.00097679	-0.75874	-0.00035303	465.28596646402366	125.96	2.9835	124.9	124.53	127.51	-1.0519					156	57	5	0	0	0	0.24597	1	9857	9857		116.9	1.4095	1	4345900	+		424	32599	295	295	691	691					0.09219528591381732
AELIDKIK	8	Unmodified	_AELIDKIK_					0	0	0			REV__tr|A0A7D7A424|A0A7D7A424_9CLOTDabbfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01555PE=4SV=1	REV__tr|A0A7D7A424|A0A7D7A424_9CLOTDabbfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01555PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.2864074707031	2	465.286943	928.559333	-2.3863	-0.0011103	1.7939	0.00083465	-0.59247	-0.00027567	465.2877596727037	126.27	3.4031	124.85	124.48	127.88	-1.4143					181	67	5	0	0	0	0.33046	1	12065	12065		101.6	2.9713	1	4410500	+		425	32599	295	295	692	692					0.09219528591381732
AELIRRID	8	Unmodified	_AELIRRID_					0	0	0			REV__nc|ENSG00000179603|O00222-2|GRM8	REV__nc|ENSG00000179603|O00222-2|GRM8	MULTI-SECPEP	OvCa9_classI_Rep3	3	492.3179626464844	2	493.293091	984.571629	-0.40722	-0.00020088	2.0041	0.0009886	1.5969	0.00078773	493.29361925102285	98.95	0.66718	97.265	97.009	97.676	-1.685					19	12	2	0	0	0	0.028476	1	6623	6623		51.335	12.083	1	33011	+		426	22131	296	296	693	693					0.07872565054424285
AELIVQPEL	9	Unmodified	_AELIVQPEL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP;DSP|p.R1308Pfs*18|1|0.56|ENSG00000096696|chr6:7580109-7580110|-/C|frameshift_variant;DSP|p.R1725Qfs*9|1|0.06|ENSG00000096696|chr6:7581363-7581364|-/A|frameshift_variant;DSP|p.V187Gfs*3|1|0.41|ENSG00000096696|chr6:7559362-7559380|GTCACCAGTGAATGTTTGG/-|frameshift_variant	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OvCa9_classI_Rep2	2	506.2895812988281	2	506.289682	1010.56481	-0.70946	-0.00035919	0.79488	0.00040244	0.085421	4.3248E-05	506.2899539709343	122.31	0.79041	122.09	121.77	122.56	-0.21803					37	15	4	0	0	0	0.59259	1	11845	11845		32.812	0.85756	1	56428			427	1949	297	297	694	694					0.059952073831937014
AELIVQPEL	9	Unmodified	_AELIVQPEL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP;DSP|p.R1308Pfs*18|1|0.56|ENSG00000096696|chr6:7580109-7580110|-/C|frameshift_variant;DSP|p.R1725Qfs*9|1|0.06|ENSG00000096696|chr6:7581363-7581364|-/A|frameshift_variant;DSP|p.V187Gfs*3|1|0.41|ENSG00000096696|chr6:7559362-7559380|GTCACCAGTGAATGTTTGG/-|frameshift_variant	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MATCH	OvCa9_classI_Rep3	3		2	506.289682	1010.56481	0.84853	0.0004296	-0.85511	-0.00043294	-0.006581	-3.3319E-06	506.2891358308033	122.86	0.88747	121.83	121.58	122.47	-1.0286	-0.088239	-0.0011592	NaN	32.812	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64970			428	1949	297	297							0.059952073831937014
AELIVQPEL	9	Unmodified	_AELIVQPEL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP;DSP|p.R1308Pfs*18|1|0.56|ENSG00000096696|chr6:7580109-7580110|-/C|frameshift_variant;DSP|p.R1725Qfs*9|1|0.06|ENSG00000096696|chr6:7581363-7581364|-/A|frameshift_variant;DSP|p.V187Gfs*3|1|0.41|ENSG00000096696|chr6:7559362-7559380|GTCACCAGTGAATGTTTGG/-|frameshift_variant	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	506.289682	1010.56481	-0.20532	-0.00010395	0.053203	2.6936E-05	-0.15212	-7.7018E-05	506.28957453985726	123.19	0.84187	121.83	121.6	122.45	-1.3666	-0.087301	-0.0002395	NaN	32.812	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77589			429	1949	297	297							0.059952073831937014
AELIVRGLL	9	Unmodified	_AELIVRGLL_					0	0	0		tr|A0A553SQV8|A0A553SQV8_NIACICpaFfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07340PE=3SV=1	tr|A0A553SQV8|A0A553SQV8_NIACICpaFfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07340PE=3SV=1	tr|A0A553SQV8|A0A553SQV8_NIACICpaFfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07340PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	492.3170471191406	2	492.316035	982.617516	0.37522	0.00018473	-0.87519	-0.00043087	-0.49997	-0.00024614	492.31549491018296	97.941	2.2247	97.048	96.776	99.001	-0.89305					86	44	4	0	0	0	0.24951	2	8879	8879;8885		68.787	4.5796	1	574150			430	34204	298	298	695;696	695					0.12551210236654242
AELIVRGLL	9	Unmodified	_AELIVRGLL_					0	0	0		tr|A0A553SQV8|A0A553SQV8_NIACICpaFfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07340PE=3SV=1	tr|A0A553SQV8|A0A553SQV8_NIACICpaFfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07340PE=3SV=1	tr|A0A553SQV8|A0A553SQV8_NIACICpaFfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07340PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	492.31591796875	2	492.316035	982.617516	-0.45847	-0.00022571	0.18173	8.9468E-05	-0.27674	-0.00013624	492.31603122769184	98.824	1.4451	97.139	96.852	98.297	-1.685					69	27	4	0	0	0	0.33652	1	6629	6629		58.782	4.0056	1	818000			431	34204	298	298	697	697					0.12551210236654242
AELIVRGLL	9	Unmodified	_AELIVRGLL_					0	0	0		tr|A0A553SQV8|A0A553SQV8_NIACICpaFfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07340PE=3SV=1	tr|A0A553SQV8|A0A553SQV8_NIACICpaFfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07340PE=3SV=1	tr|A0A553SQV8|A0A553SQV8_NIACICpaFfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07340PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.3169860839844	2	492.316035	982.617516	-0.36395	-0.00017918	0.020264	9.9762E-06	-0.34368	-0.0001692	492.3159243507644	99.407	1.3843	97.082	96.795	98.179	-2.3253					64	26	3	0	0	0	0.40667	1	8891	8891		51.335	1.7994	1	745510			432	34204	298	298	698	698					0.12551210236654242
AELKGLDVDSL	11	Unmodified	_AELKGLDVDSL_					0	0	0		nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17;ENST00000461464.1_1_4:57576495-57576777:+|nuORF;ENST00000498256.1_1_8:29489773-29490157:+|nuORF;ENST00000394133.2_1_10:95043842-95044274:-|nuORF	nc|ENSG00000265681|P18621-2|RPL17	nc|ENSG00000265681|P18621-2|RPL17	MULTI-MSMS	OvCa99_classI_Rep5	1	580.31640625	2	580.313886	1158.61322	2.3552	0.0013668	1.0705	0.00062125	3.4258	0.001988	580.314065175723	102.7	0.51016	102.7	102.42	102.93	0					26	11	4	0	0	0	0.1379	1	11462	11462		89.029	32.595	1	708120			433	9523	299	299	699	699					0.040256562324202605
AELKGLDVDSL	11	Unmodified	_AELKGLDVDSL_					0	0	0		nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17;ENST00000461464.1_1_4:57576495-57576777:+|nuORF;ENST00000498256.1_1_8:29489773-29490157:+|nuORF;ENST00000394133.2_1_10:95043842-95044274:-|nuORF	nc|ENSG00000265681|P18621-2|RPL17	nc|ENSG00000265681|P18621-2|RPL17	MULTI-MATCH	OvCa9_classI_Rep2	2		2	580.313886	1158.61322	-1.3025	-0.00075586	0.89836	0.00052133	-0.40415	-0.00023453	580.3144542437337	103.11	0.6408	102.43	102.08	102.72	-0.68459	0.027613	0.00037455	NaN	89.029	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16114			434	9523	299	299							0.040256562324202605
AELKGLDVDSL	11	Unmodified	_AELKGLDVDSL_					0	0	0		nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17;ENST00000461464.1_1_4:57576495-57576777:+|nuORF;ENST00000498256.1_1_8:29489773-29490157:+|nuORF;ENST00000394133.2_1_10:95043842-95044274:-|nuORF	nc|ENSG00000265681|P18621-2|RPL17	nc|ENSG00000265681|P18621-2|RPL17	MULTI-MATCH	OvCa9_classI_Rep3	3		2	580.313886	1158.61322	-0.79928	-0.00046383	-0.64191	-0.00037251	-1.4412	-0.00083634	580.3130217663339	103.73	0.57701	102.3	102.08	102.66	-1.4347	-0.10401	-0.0014131	NaN	89.029	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24624			435	9523	299	299							0.040256562324202605
AELKGLDVDSL	11	Unmodified	_AELKGLDVDSL_					0	0	0		nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17;ENST00000461464.1_1_4:57576495-57576777:+|nuORF;ENST00000498256.1_1_8:29489773-29490157:+|nuORF;ENST00000394133.2_1_10:95043842-95044274:-|nuORF	nc|ENSG00000265681|P18621-2|RPL17	nc|ENSG00000265681|P18621-2|RPL17	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	580.313886	1158.61322	-1.0646	-0.00061779	0.8692	0.00050441	-0.19538	-0.00011338	580.314317510863	104.29	0.68176	102.18	102.01	102.69	-2.1192	-0.22413	0.00034071	NaN	89.029	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16135			436	9523	299	299							0.040256562324202605
AELKHNIQS	9	Unmodified	_AELKHNIQS_					0	0	0			REV__nc|ENSG00000047932|Q9HD26-3|GOPC	REV__nc|ENSG00000047932|Q9HD26-3|GOPC	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.301513671875	2	520.28018	1038.54581	1.744	0.00090735	1.8818	0.00097907	3.6258	0.0018864	520.7822456865733	110.58	0.35835	110.58	110.4	110.76	0					12	7	2	0	0	0	0.027462	1	12562	12562		13.454	0	1	79445	+		437	16663	300	300	700	700					0.028076708121261618
AELKIVADQL	10	Unmodified	_AELKIVADQL_					0	0	0		nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF;nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-2|IST1	nc|ENSG00000182149|P53990-2|IST1	MULTI-MSMS	OvCa99_classI_Rep5	1	550.3230590820312	2	550.321514	1098.62847	2.6218	0.0014429	-0.40686	-0.0002239	2.215	0.001219	550.3212255596446	97.874	0.5101	97.874	97.611	98.121	0					34	11	4	0	0	0	0.012025	1	10764	10764		157.34	50.662	1	3652500			438	7970	301	301	701	701					0.08310567820285542
AELKIVADQL	10	Unmodified	_AELKIVADQL_					0	0	0		nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF;nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-2|IST1	nc|ENSG00000182149|P53990-2|IST1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	550.321514	1098.62847	0.016388	9.0186E-06	-0.47307	-0.00026034	-0.45668	-0.00025132	550.3211686271262	98.628	1.3316	97.735	96.974	98.305	-0.89305	-0.011581	-0.0004933	NaN	157.34	45	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74877			439	7970	301	301							0.08310567820285542
AELKIVADQL	10	Unmodified	_AELKIVADQL_					0	0	0		nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF;nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-2|IST1	nc|ENSG00000182149|P53990-2|IST1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	550.321514	1098.62847	-0.79537	-0.00043771	0.67412	0.00037098	-0.12126	-6.673E-05	550.3220248577384	99.455	0.77292	97.77	97.423	98.196	-1.685	0.02405	0.00076934	NaN	157.34	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68037			440	7970	301	301							0.08310567820285542
AELKKILAN	9	Unmodified	_AELKKILAN_					0	0	0		ENST00000560591.5_1_15:67835673-67951132:+|nuORF;nc|ENSG00000137764|Q13163-4|MAP2K5;nc|ENSG00000137764|Q13163-2|MAP2K5;nc|ENSG00000137764|Q13163-3|MAP2K5;ENSG00000137764|ENST00000178640|MAP2K5	ENST00000560591.5_1_15:67835673-67951132:+|nuORF	ENST00000560591.5_1_15:67835673-67951132:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	500.3124694824219	2	500.313492	998.612431	0.59332	0.00029685	-0.99705	-0.00049884	-0.40373	-0.00020199	500.3129079797688	127.44	1.7293	127.21	126.84	128.57	-0.2359					109	34	4	0	0	0	0.31747	1	12533	12533		60.972	2.19	1	1360100			441	4613	302	302	702	702					0.11306906374034043
AELKKILAN	9	Unmodified	_AELKKILAN_					0	0	0		ENST00000560591.5_1_15:67835673-67951132:+|nuORF;nc|ENSG00000137764|Q13163-4|MAP2K5;nc|ENSG00000137764|Q13163-2|MAP2K5;nc|ENSG00000137764|Q13163-3|MAP2K5;ENSG00000137764|ENST00000178640|MAP2K5	ENST00000560591.5_1_15:67835673-67951132:+|nuORF	ENST00000560591.5_1_15:67835673-67951132:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	500.3135986328125	2	500.313492	998.612431	0.37155	0.00018589	-0.7555	-0.00037799	-0.38395	-0.00019209	500.31302313941114	128.99	2.6573	127.9	127.57	130.22	-1.0933					135	53	5	0	0	0	0.19758	1	10192	10192		76.774	7.1465	1	747300			442	4613	302	302	703	703					0.11306906374034043
AELLHPNPRC	10	Unmodified	_AELLHPNPRC_					0	0	0			REV__ENST00000549384.5_1_12:109042450-109042558:-|nuORF	REV__ENST00000549384.5_1_12:109042450-109042558:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.8098754882812	2	575.295307	1148.57606	-1.5921	-0.00091595	-2.5731	-0.0014803	-4.1652	-0.0023962	575.2935148798854	124.6	0.83444	123.21	123.02	123.86	-1.3908					23	15	2	0	0	0	0.026734	1	11884	11884		31.53	0	1	30541	+		443	27456	303	303	704	704					0.007717062056826762
AELLKLIEI	9	Unmodified	_AELLKLIEI_					0	0	0		ENSG00000128052|ENST00000263923|KDR	ENSG00000128052|ENST00000263923|KDR	ENSG00000128052|ENST00000263923|KDR	MULTI-MSMS	OvCa9_classI_Rep2	2	521.3311767578125	2	521.33135	1040.64815	0.27913	0.00014552	-0.4707	-0.00024539	-0.19158	-9.9874E-05	521.3309489659422	134.75	0.9297	134.52	134.2	135.13	-0.22696					32	18	2	0	0	0	0.2077	1	13344	13344		75.043	12.936	1	77592			444	3864	304	304	705	705					0.12944943831030287
AELLQDHQL	9	Unmodified	_AELLQDHQL_					0	0	0		ENSG00000116685|ENST00000376572|KIAA2013;nc|ENSG00000116685|Q8IYS2-2|KIAA2013	ENSG00000116685|ENST00000376572|KIAA2013	ENSG00000116685|ENST00000376572|KIAA2013	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.7797241210938	2	533.780013	1065.54547	-2.2179	-0.0011839	1.7819	0.00095115	-0.43599	-0.00023272	533.7808028137017	72.515	1.6491	69.119	68.813	70.462	-3.3961					66	33	4	0	0	0	0.40818	1	5577	5577		51.193	0	1	549480			445	3196	305	305	706	706					0.015322510922715082
AELMKFLPA	9	Unmodified	_AELMKFLPA_					0	0	0			REV__tr|A0A7D6VRR4|A0A7D6VRR4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07955PE=4SV=1	REV__tr|A0A7D6VRR4|A0A7D6VRR4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07955PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.3026123046875	2	510.283346	1018.55214	-0.67991	-0.00034695	-3.5043	-0.0017882	-4.1842	-0.0021351	510.7830622654516	50.472	0.48388	50.472	50.201	50.685	0					28	10	3	0	0	0	0.027441	1	3824	3824		49.442	22.749	1	446550	+		446	31438	306	306	707	707					0.04360472719304198
AELMKRPL	8	Unmodified	_AELMKRPL_					0	0	0			REV__ENST00000393596.2_1_11:72929675-72939161:+|nuORF	REV__ENST00000393596.2_1_11:72929675-72939161:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	479.2801818847656	2	479.281137	956.547722	-0.4527	-0.00021697	-3.0726	-0.0014726	-3.5253	-0.0016896	479.2796688729981	96.325	1.9148	94.496	94.027	95.941	-1.8286					106	37	4	0	0	0	0.56195	1	6374	6374		71.296	5.4925	1	3171600	+		447	25283	307	307	708	708					0.0677100829640267
AELNKIFAL	9	Unmodified	_AELNKIFAL_					0	0	0		nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;CDK5RAP2|p.Y1498Gfs*4|1|0.29|ENSG00000136861|chr9:120409227-120409240|TCACGCTGGCATAC/-|frameshift_variant;ENST00000483412.5_1_9:123170580-123298708:-|nuORF	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.800048828125	2	509.800217	1017.58588	-0.99853	-0.00050905	0.60371	0.00030777	-0.39481	-0.00020128	509.80034064609833	117.88	0.94633	116.53	116.26	117.21	-1.3444					29	17	3	0	0	0	0.2784	1	11034	11034		65.465	10.743	1	90229			448	4524	308	308	709	709					0.07779217482709555
AELNKIFAL	9	Unmodified	_AELNKIFAL_					0	0	0		nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;CDK5RAP2|p.Y1498Gfs*4|1|0.29|ENSG00000136861|chr9:120409227-120409240|TCACGCTGGCATAC/-|frameshift_variant;ENST00000483412.5_1_9:123170580-123298708:-|nuORF	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	509.800217	1017.58588	-1.079	-0.00055008	0.63707	0.00032478	-0.44194	-0.0002253	509.80034836505587	116.7	0.98887	116.57	116.32	117.31	-0.12868	0.027958	0.00010838	NaN	65.465	32	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69795			449	4524	308	308							0.07779217482709555
AELNKIFAL	9	Unmodified	_AELNKIFAL_					0	0	0		nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;CDK5RAP2|p.Y1498Gfs*4|1|0.29|ENSG00000136861|chr9:120409227-120409240|TCACGCTGGCATAC/-|frameshift_variant;ENST00000483412.5_1_9:123170580-123298708:-|nuORF	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	509.800217	1017.58588	-0.85864	-0.00043774	0.42713	0.00021775	-0.43151	-0.00021999	509.8003340145297	117.57	0.84128	116.54	116.34	117.18	-1.0324	-0.011651	-0.00010568	NaN	65.465	31	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76794			450	4524	308	308							0.07779217482709555
AELNPRRL	8	Unmodified	_AELNPRRL_					0	0	0			REV__ENSG00000164399|ENST00000296870|IL3	REV__ENSG00000164399|ENST00000296870|IL3	MULTI-MSMS	OvCa99_classI_Rep5	1	484.784423828125	2	484.785433	967.556313	-0.55154	-0.00026738	0.58244	0.00028236	0.030905	1.4982E-05	484.7855324348961	38.23	0.63652	38.23	37.983	38.619	0					29	13	3	0	0	0	0.73494	1	2156	2156		34.173	1.3601	1	491820	+		451	20985	309	309	710	710					0.07123698257237265
AELNRDLR	8	Unmodified	_AELNRDLR_					0	0	0		ENSG00000166707|ENST00000650639|ZCCHC18	ENSG00000166707|ENST00000650639|ZCCHC18	ENSG00000166707|ENST00000650639|ZCCHC18	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.77423095703125	2	493.772522	985.530492	-0.37748	-0.00018639	-0.05967	-2.9463E-05	-0.43715	-0.00021585	493.772510117244	52.634	2.1276	49.426	49.044	51.171	-3.208					73	41	2	0	0	0	0.25402	1	3163	3163		115.46	5.3391	1	2012500			452	6702	310	310	711	711					0.03714804014941819
AELPLRLFL	9	Unmodified	_AELPLRLFL_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MSMS	OvCa99_classI_Rep5	1	536.3333129882812	2	536.331685	1070.64882	1.262	0.00067685	0.75451	0.00040467	2.0165	0.0010815	536.3319880865647	143.51	0.89139	143.51	143.17	144.06	0					49	17	4	0	0	0	0.22621	1	16766	16766		71.877	22.436	1	752510			453	1407	311	311	712	712					0.11631783270740925
AELPRPLLQ	9	Unmodified	_AELPRPLLQ_					0	0	0		ENST00000506637.2_1_4:81308203-81308479:-|nuORF	ENST00000506637.2_1_4:81308203-81308479:-|nuORF	ENST00000506637.2_1_4:81308203-81308479:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	518.8109130859375	2	518.811116	1035.60768	0.3563	0.00018485	-0.80321	-0.00041671	-0.44691	-0.00023186	518.8106044790309	108.96	1.5339	108.73	108.27	109.81	-0.22498					87	30	4	0	0	0	0.19758	1	10248	10248		76.774	2.5191	1	921920			454	12913	312	312	713	713					0.09130022231283874
AELPRPLLQ	9	Unmodified	_AELPRPLLQ_					0	0	0		ENST00000506637.2_1_4:81308203-81308479:-|nuORF	ENST00000506637.2_1_4:81308203-81308479:-|nuORF	ENST00000506637.2_1_4:81308203-81308479:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	518.8102416992188	2	518.811116	1035.60768	0.23501	0.00012192	-0.8243	-0.00042766	-0.5893	-0.00030573	518.8106156837061	109.74	1.9451	108.59	107.72	109.66	-1.1444					98	36	4	0	0	0	0.24951	1	7919	7919		68.787	6.6794	1	1215100			455	12913	312	312	714	714					0.09130022231283874
AELRHVMTNL	10	Unmodified	_AELRHVMTNL_					0	0	0		ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;ENST00000597868.5_1_19:47111871-47112407:+|nuORF;ENST00000482532.5_1_2:47387917-47389823:-|nuORF	ENSG00000198668|ENST00000356978|CALM1	ENSG00000198668|ENST00000356978|CALM1	MULTI-MSMS	OvCa99_classI_Rep5	1	592.3179931640625	2	592.31624	1182.61793	0.076321	4.5206E-05	0.33444	0.0001981	0.41076	0.0002433	592.3162840806718	68.883	0.658	68.883	68.649	69.307	0					38	15	3	0	0	0	0.20001	1	6516	6516		94.409	30.202	1	3084000			456	5109	313	313	715	715					0.033922618942142435
AELRHVMTNL	10	Unmodified	_AELRHVMTNL_					0	0	0		ENSG00000198668|ENST00000356978|CALM1;ENSG00000160014|ENST00000291295|CALM3;ENSG00000143933|ENST00000272298|CALM2;ENST00000597868.5_1_19:47111871-47112407:+|nuORF;ENST00000482532.5_1_2:47387917-47389823:-|nuORF	ENSG00000198668|ENST00000356978|CALM1	ENSG00000198668|ENST00000356978|CALM1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	592.31624	1182.61793	0.12288	7.2785E-05	1.1941	0.0007073	1.317	0.00078009	592.8192388600391	71.127	0.42125	68.62	68.541	68.963	-2.5071	-0.13163	0.00095299	NaN	94.409	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11447			457	5109	313	313							0.033922618942142435
AELRKRNVD	9	Unmodified	_AELRKRNVD_					0	0	0		ENST00000586934.5_1_19:5623180-5651054:+|nuORF;nc|ENSG00000160633|Q15424-2|SAFB;nc|ENSG00000160633|Q15424|SAFB;nc|ENSG00000160633|Q15424-4|SAFB;ENSG00000160633|ENST00000588852|SAFB	ENST00000586934.5_1_19:5623180-5651054:+|nuORF	ENST00000586934.5_1_19:5623180-5651054:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	550.8137817382812	2	550.812179	1099.60981	-0.16415	-9.0414E-05	1.4964	0.00082423	1.3323	0.00073382	550.8129696109856	107.26	1.4858	105.99	105.76	107.25	-1.267					67	28	4	0	0	0	0.48324	1	7621	7621		44.117	8.9648	1	254060			458	6076	314	314	716	716					0.06398450969095393
AELRRGTVC	9	Unmodified	_AELRRGTVC_					0	0	0		ENST00000304916.3_1_8:127568411-127568705:-|nuORF	ENST00000304916.3_1_8:127568411-127568705:-|nuORF	ENST00000304916.3_1_8:127568411-127568705:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.780517578125	2	502.768926	1003.5233	-2.1187	-0.0010652	-3.4114	-0.0017152	-5.5302	-0.0027804	502.76686786995424	87.656	1.4098	85.029	84.448	85.858	-2.6269					58	27	3	0	0	0	0.027462	1	7554	7554		23.042	0	1	226440			459	10228	315	315	717	717					0.02167748142869641
AELTALESLI	10	Unmodified	_AELTALESLI_					0	0	0		ENST00000532904.5_1_11:62446335-62446470:-|nuORF;ENST00000531056.5_1_11:62445958-62446470:-|nuORF;ENST00000528907.5_1_11:62445692-62446470:-|nuORF;ENST00000533908.5_1_11:62445382-62446470:-|nuORF;ENST00000525717.5_1_11:62445243-62446470:-|nuORF;ENST00000524762.5_1_11:62445008-62446470:-|nuORF;ENSG00000162191|ENST00000301935|UBXN1;nc|ENSG00000162191|Q04323-2|UBXN1	ENST00000532904.5_1_11:62446335-62446470:-|nuORF	ENST00000532904.5_1_11:62446335-62446470:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.2980346679688	2	530.300247	1058.58594	-1.4533	-0.00077069	-0.12436	-6.5946E-05	-1.5777	-0.00083664	530.3004531187839	101.39	0.81617	99.125	98.792	99.609	-2.2665					55	16	5	0	0	0	0.18827	1	9089	9089		96.19	2.995	1	496790			460	6161	316	316	718	718					0.058991726920339715
AELTAPPL	8	Unmodified	_AELTAPPL_					0	0	0			REV__ENSG00000133980|ENST00000256362|VRTN	REV__ENSG00000133980|ENST00000256362|VRTN	MULTI-MSMS	OvCa9_classI_Rep4_	4	406.2334289550781	2	406.231636	810.448719	1.3683	0.00055586	-1.2503	-0.00050792	0.11802	4.7945E-05	406.2309313067954	57.66	2.0728	54.315	53.679	55.752	-3.3449					85	40	5	0	0	0	0.67745	1	3754	3754		47.916	7.343	1	335870	+		461	19165	317	317	719	719					0.03591308603131438
AELTAPPL	8	Unmodified	_AELTAPPL_					0	0	0			REV__ENSG00000133980|ENST00000256362|VRTN	REV__ENSG00000133980|ENST00000256362|VRTN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	406.231636	810.448719	0.62125	0.00025237	-0.69353	-0.00028173	-0.072282	-2.9363E-05	406.23088062509936	57.268	1.3935	54.476	54.03	55.424	-2.792	0.080743	0.00034779	NaN	47.916	44	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48565	+		462	19165	317	317							0.03591308603131438
AELTGDHQL	9	Unmodified	_AELTGDHQL_					0	0	0		SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant;ENSG00000144028|ENST00000323853|SNRNP200;SNRNP200|p.D1323Lfs*87|1|0.04|ENSG00000144028|chr2:96286347-96286348|-/AG|frameshift_variant;SNRNP200|p.I595Pfs*10|1|0.03|ENSG00000144028|chr2:96295513-96295547|GTGTAGGTGCGCTCACCACCCTTGCGGGTGATGAT/-|frameshift_variant	SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	492.2451171875	2	492.243264	982.471974	-0.29024	-0.00014287	1.3467	0.0006629	1.0564	0.00052003	492.2433042914145	58.629	1.0438	58.629	58.112	59.156	0					65	25	4	0	0	0	0.10363	2	4986	4986;5016		96.19	27.028	1	4440200			463	5119	318	318	720;721	720					-0.019962973501833403
AELTKVFEI	9	Unmodified	_AELTKVFEI_					0	0	0		ENSG00000130755|ENST00000597595|GMFG;ENST00000601731.1_1_19:39819119-39826633:-|nuORF;ENSG00000197045|ENST00000358056|GMFB	ENSG00000130755|ENST00000597595|GMFG	ENSG00000130755|ENST00000597595|GMFG	MULTI-MSMS	OvCa9_classI_Rep2	2	525.2975463867188	2	525.297507	1048.58046	0.52578	0.00027619	-0.78466	-0.00041218	-0.25889	-0.00013599	525.2968589770251	112.28	1.2331	112.16	111.88	113.12	-0.12174					64	24	4	0	0	0	0.084918	3	10615	10615;10620;10627		101.25	12.273	1	233110			464	4010	319	319	722;723;724	722					0.05811493900228015
AELTKVFEI	9	Unmodified	_AELTKVFEI_					0	0	0		ENSG00000130755|ENST00000597595|GMFG;ENST00000601731.1_1_19:39819119-39826633:-|nuORF;ENSG00000197045|ENST00000358056|GMFB	ENSG00000130755|ENST00000597595|GMFG	ENSG00000130755|ENST00000597595|GMFG	MULTI-MSMS	OvCa9_classI_Rep3	3	525.298095703125	2	525.297507	1048.58046	0.69477	0.00036496	-0.37778	-0.00019845	0.31699	0.00016651	525.2970921444157	113.09	1.3718	112.02	111.71	113.08	-1.0753					70	26	4	0	0	0	0.021573	2	8294	8294;8300		145.16	16.36	1	258970			465	4010	319	319	725;726	725					0.05811493900228015
AELTKVFEI	9	Unmodified	_AELTKVFEI_					0	0	0		ENSG00000130755|ENST00000597595|GMFG;ENST00000601731.1_1_19:39819119-39826633:-|nuORF;ENSG00000197045|ENST00000358056|GMFB	ENSG00000130755|ENST00000597595|GMFG	ENSG00000130755|ENST00000597595|GMFG	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.2958374023438	2	525.297507	1048.58046	-0.10112	-5.3116E-05	-0.20479	-0.00010758	-0.30591	-0.00016069	525.2972170600306	113.47	1.3913	112.03	111.66	113.05	-1.4461					71	27	4	0	0	0	0.051592	3	10511	10511;10524;10536		117.81	21.621	1	307350			466	4010	319	319	727;728;729	727					0.05811493900228015
AELVPWLN	8	Unmodified	_AELVPWLN_					0	0	0		nc|ENSG00000114107|Q8NHQ1-2|CEP70;nc|ENSG00000114107|Q8NHQ1-5|CEP70;nc|ENSG00000114107|Q8NHQ1-4|CEP70;ENSG00000114107|ENST00000264982|CEP70	nc|ENSG00000114107|Q8NHQ1-2|CEP70	nc|ENSG00000114107|Q8NHQ1-2|CEP70	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.796875	2	471.258185	940.501818	0.2953	0.00013916	-4.3576	-0.0020536	-4.0624	-0.0019144	471.25612429475274	62.449	0.69488	62.449	62.165	62.86	0					24	16	2	0	0	0	0.028476	1	5549	5549		38.806	5.2906	1	536830			467	3012	320	320	730	730					0.029186863858058132
AEMAQNAVRL	10	Unmodified	_AEMAQNAVRL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OvCa99_classI_Rep5	1	551.7890014648438	2	551.787315	1101.56008	0.34936	0.00019277	-0.90205	-0.00049774	-0.55269	-0.00030496	551.786710051837	72.067	0.37186	72.067	71.877	72.249	0					16	8	2	0	0	0	0.20836	1	6996	6996		93.143	10.903	1	1435300			468	6867	321	321	731	731					0.01335999968773649
AEMLPGVLQQF	11	Oxidation (M)	_AEM(Oxidation (M))LPGVLQQF_		AEM(1)LPGVLQQF		AEM(77)LPGVLQQF	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;E2F5-NDRG1|1|fusion;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	OvCa9_classI_Rep2	2	624.8177490234375	2	624.818281	1247.62201	-0.15407	-9.6269E-05	0.045389	2.836E-05	-0.10869	-6.7909E-05	624.8180951589273	132.04	1.4208	131.81	131.3	132.72	-0.22696					77	28	4	0	0	0	0.21979	6	13026	12991;13015;13020;13026;13032;13039		77.318	31.345	1	257750			469	771	322	322	732;733;734;735;736;737	735		25			0.00810306597259114
AEMLPGVLQQF	11	Oxidation (M)	_AEM(Oxidation (M))LPGVLQQF_		AEM(1)LPGVLQQF		AEM(96)LPGVLQQF	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;E2F5-NDRG1|1|fusion;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	OvCa9_classI_Rep3	3	624.8181762695312	2	624.818281	1247.62201	0.58741	0.00036703	-0.47152	-0.00029461	0.11589	7.2411E-05	624.8177980755548	132.66	1.4284	131.53	131.04	132.47	-1.1249					71	28	3	0	0	0	0.10496	11	10618	10581;10587;10592;10599;10605;10612;10618;10624;10631;10637;10644		96.034	35.915	1	247860			470	771	322	322	738;739;740;741;742;743;744;745;746;747;748	744		25			0.00810306597259114
AEMLPGVLQQF	11	Oxidation (M)	_AEM(Oxidation (M))LPGVLQQF_		AEM(1)LPGVLQQF		AEM(100)LPGVLQQF	0	0	1		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;E2F5-NDRG1|1|fusion;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	OvCa9_classI_Rep4_	4	624.8165283203125	2	624.818281	1247.62201	3.7303	0.0023307	-3.8795	-0.002424	-0.14919	-9.3218E-05	624.8157318590386	133.04	1.6157	131.52	130.88	132.5	-1.5141					83	32	3	0	0	0	0.068862	5	12780	12780;12793;12804;12817;12843		104.01	50.06	1	316740			471	771	322	322	749;750;751;752;753	749		25			0.00810306597259114
AEMLPGVLQQF	11	Unmodified	_AEMLPGVLQQF_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;E2F5-NDRG1|1|fusion;ENST00000518010.5_1_8:134269105-134296554:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	OvCa9_classI_Rep4_	4	616.8219604492188	2	616.820824	1231.62709	-0.68259	-0.00042104	1.2398	0.00076476	0.55726	0.00034373	616.8212147168359	145	0.89395	143.56	143.25	144.15	-1.4357					39	16	4	0	0	0	0.68757	1	14220	14220		33.922	1.9668	1	70686			472	771	322	323	754	754					0.020546104598906823
AEMMQQKELS	10	Oxidation (M)	_AEMM(Oxidation (M))QQKELS_		AEM(0.017)M(0.983)QQKELS		AEM(-18)M(18)QQKELS	0	0	1			REV__nc|ENSG00000168491|Q8TBZ0-2|CCDC110	REV__nc|ENSG00000168491|Q8TBZ0-2|CCDC110	MULTI-MSMS	OvCa99_classI_Rep5	1	404.1890563964844	3	404.186263	1209.53696	0.81872	0.00033092	3.1622	0.0012781	3.9809	0.001609	404.18744024575903	50.751	0.56865	50.751	50.509	51.078	0					33	12	4	0	0	0	0.38315	1	3875	3875		70.816	21.28	2	1506700	+		473	21381	323	324	755	755		499			-0.05942806930875122
AEMMQQKELS	10	Oxidation (M)	_AEMM(Oxidation (M))QQKELS_					0	0	1			REV__nc|ENSG00000168491|Q8TBZ0-2|CCDC110	REV__nc|ENSG00000168491|Q8TBZ0-2|CCDC110	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	404.186263	1209.53696	0.81872	0.00033092	3.1622	0.0012781	3.9809	0.001609	404.18744024575903	50.751	0.56865	50.751	50.509	51.078	0	0	0	NaN	70.816	33	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1506700	+		474	21381	323	324				499			-0.05942806930875122
AENAKNLVYI	10	Unmodified	_AENAKNLVYI_					0	0	0			REV__tr|A0A7D7A660|A0A7D7A660_9CLOTtRNA(guanine-N(7)-)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=trmBPE=3SV=1	REV__tr|A0A7D7A660|A0A7D7A660_9CLOTtRNA(guanine-N(7)-)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=trmBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.81103515625	2	567.811313	1133.60807	0.016962	9.6314E-06	-0.19743	-0.0001121	-0.18047	-0.00010247	567.811208678959	114.23	1.3057	113.18	112.79	114.09	-1.055					67	25	3	0	0	0	0.53807	1	8429	8429		49.536	3.5638	1	291700	+		475	32652	324	325	756	756					0.04661397160475644
AENDVDNELLD	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AENDVDNELLD_					1	0	0		ENST00000481456.1_1_6:31503008-31508408:-|nuORF;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B;ENST00000431908.5_1_6:31504422-31508408:-|nuORF	ENST00000481456.1_1_6:31503008-31508408:-|nuORF	ENST00000481456.1_1_6:31503008-31508408:-|nuORF	MSMS	OvCa99_classI_Rep5	1	644.7823486328125	2	644.780604	1287.54666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.83	1	132.83	132.33	133.33	0								0	0	0	0.032079	1	15440	15440		82.831	31.495	1				476	8828	325	326	757	757					-0.08561624120125089
AENFYTLL	8	Unmodified	_AENFYTLL_					0	0	0		ENSG00000187372|ENST00000341948|PCDHB13	ENSG00000187372|ENST00000341948|PCDHB13	ENSG00000187372|ENST00000341948|PCDHB13	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.8253173828125	2	485.74765	969.480748	-0.48777	-0.00023693	3.373	0.0016384	2.8852	0.0014015	485.7485398043002	67.757	0.35067	67.757	67.604	67.955	0					12	8	2	0	0	0	0.028476	1	6356	6356		40.573	0	1	188970			477	8398	326	327	758	758					-0.00521323713712718
AENGRHSDL	9	Unmodified	_AENGRHSDL_					0	0	0		nc|ENSG00000179912|Q9Y2K5-3|R3HDM2;nc|ENSG00000179912|Q9Y2K5-2|R3HDM2;nc|ENSG00000179912|Q9Y2K5|R3HDM2;ENSG00000179912|ENST00000402412|R3HDM2	nc|ENSG00000179912|Q9Y2K5-3|R3HDM2	nc|ENSG00000179912|Q9Y2K5-3|R3HDM2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.7677307128906	2	499.736137	997.457721	0.5135	0.00025661	0.94026	0.00046988	1.4538	0.00072649	499.7352580527757	67.331	0.19889	63.841	63.689	63.888	-3.4902					5	3	2	0	0	0	0.027418	1	4923	4923		71.877	15.156	1	6650.6			478	7847	327	328	759	759					-0.041109497784759697
AENKDEIAL	9	Unmodified	_AENKDEIAL_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5-VWA3B|1|fusion;ENST00000429133.5_1_2:216974075-216982480:+|nuORF;ENST00000476360.1_1_2:216974075-216981630:+|nuORF	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	OvCa99_classI_Rep5	1	501.7602844238281	2	501.758746	1001.50294	-0.78297	-0.00039286	-0.64338	-0.00032282	-1.4264	-0.00071569	501.7584850892943	65.488	1.5895	65.488	65.15	66.739	0					117	39	6	0	0	0	0.013371	2	6022	5994;6022		158.07	18.104	1	127620000			479	1607	328	329	760;761	761					0.002248559640406711
AENKDEIAL	9	Unmodified	_AENKDEIAL_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5-VWA3B|1|fusion;ENST00000429133.5_1_2:216974075-216982480:+|nuORF;ENST00000476360.1_1_2:216974075-216981630:+|nuORF	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	OvCa9_classI_Rep2	2	501.7590637207031	2	501.758746	1001.50294	-1.2873	-0.00064594	1.1231	0.00056355	-0.16421	-8.2392E-05	501.7592933844178	69.011	1.5923	66.391	65.77	67.362	-2.6203					59	31	2	0	0	0	0.12515	2	5472	5472;5478		90.37	10.657	1	925860			480	1607	328	329	762;763	762					0.002248559640406711
AENKDEIAL	9	Unmodified	_AENKDEIAL_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5-VWA3B|1|fusion;ENST00000429133.5_1_2:216974075-216982480:+|nuORF;ENST00000476360.1_1_2:216974075-216981630:+|nuORF	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.7596740722656	2	501.758746	1001.50294	-1.2262	-0.00061525	0.8754	0.00043924	-0.35078	-0.00017601	501.75920761548286	69.754	2.5299	66.273	65.762	68.292	-3.4812					77	51	2	0	0	0	0.0094273	5	5233	5222;5233;5245;5258;5270		171.53	22.827	1	4689700			481	1607	328	329	764;765;766;767;768	765					0.002248559640406711
AENLLSDGAL	10	Unmodified	_AENLLSDGAL_					0	0	0			REV__tr|A0A7D6VSX6|A0A7D6VSX6_9CLOTGeranyltranstransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14470PE=3SV=1	REV__tr|A0A7D6VSX6|A0A7D6VSX6_9CLOTGeranyltranstransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14470PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.75982666015625	2	501.758746	1001.50294	-1.2262	-0.00061525	0.8754	0.00043924	-0.35078	-0.00017601	501.75920761548286	69.754	2.5299	66.273	65.762	68.292	-3.4812					77	51	2	0	0	0	0.55109	1	5297	5297		47.96	0	1	4689700	+		482	31551	329	330	769	769					0.0022485596406340846
AENMQRLL	8	Unmodified	_AENMQRLL_					0	0	0		ENST00000486916.5_1_6:160592405-160666544:-|nuORF	ENST00000486916.5_1_6:160592405-160666544:-|nuORF	ENST00000486916.5_1_6:160592405-160666544:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.7808532714844	2	487.758027	973.5015	-0.51533	-0.00025136	3.0435	0.0014845	2.5281	0.0012331	487.75737399039764	73.931	0.46879	70.7	70.531	71	-3.2308					13	9	2	0	0	0	0.028476	1	5751	5751		65.803	16.362	1	32356			483	12630	330	331	770	770					0.013689433943113727
AENNIQPIF	9	Unmodified	_AENNIQPIF_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46314678-46340855:-|nuORF	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MULTI-MSMS	OvCa9_classI_Rep2	2	523.2693481445312	2	523.269281	1044.52401	0.43587	0.00022808	-0.76422	-0.00039989	-0.32835	-0.00017182	523.2687191280446	110.76	1.4312	110.62	110.19	111.62	-0.13961					94	28	4	0	0	0	0.33652	1	10439	10439		58.782	3.2778	1	245360			484	6050	331	332	771	771					0.003528660635538472
AENNIQPIF	9	Unmodified	_AENNIQPIF_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46314678-46340855:-|nuORF	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MULTI-MSMS	OvCa9_classI_Rep3	3	523.268798828125	2	523.269281	1044.52401	1.3489	0.00070584	-1.6895	-0.00088407	-0.34061	-0.00017823	523.2682579368221	111.72	1.4316	110.62	110.2	111.63	-1.1038					79	28	4	0	0	0	0.36502	3	8117	8117;8130;8149		55.504	8.6634	1	588020			485	6050	331	332	772;773;774	772					0.003528660635538472
AENNIQPIF	9	Unmodified	_AENNIQPIF_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46314678-46340855:-|nuORF	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.2691650390625	2	523.269281	1044.52401	-0.22588	-0.0001182	-0.3914	-0.00020481	-0.61728	-0.000323	523.2690065306967	112.28	1.4786	110.77	110.21	111.69	-1.5111					72	28	4	0	0	0	0.35444	1	10372	10372		56.721	3.3696	1	617760			486	6050	331	332	775	775					0.003528660635538472
AENNISQE	8	Unmodified	_AENNISQE_					0	0	0		tr|A0A7D6ZGU5|A0A7D6ZGU5_9CLOTDUF3867domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20415PE=4SV=1	tr|A0A7D6ZGU5|A0A7D6ZGU5_9CLOTDUF3867domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20415PE=4SV=1	tr|A0A7D6ZGU5|A0A7D6ZGU5_9CLOTDUF3867domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20415PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	452.7046813964844	2	452.703971	903.393389	2.243	0.0010154	-1.5205	-0.00068832	0.72258	0.00032711	452.70324167027087	31.032	1.5294	28.322	28.15	29.679	-2.7097					67	30	4	0	0	0	0.60331	1	922	922		63.306	0	1	376420			487	35552	332	333	776	776					-0.06217149655276444
AENPGKYNIL	10	Unmodified	_AENPGKYNIL_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	OvCa9_classI_Rep3	3	559.7977905273438	2	559.795663	1117.57677	-0.18411	-0.00010306	-0.14359	-8.0384E-05	-0.3277	-0.00018345	559.795482047263	80.024	1.679	77.684	77.36	79.039	-2.3399					74	32	3	0	0	0	0.32926	1	4371	4371		77.318	24.381	1	1117400			488	5665	333	334	777	777					0.022688241263722375
AENQFKRII	9	Unmodified	_AENQFKRII_					0	0	0		ENST00000399586.2_1_X:74960734-74966719:-|nuORF;nc|ENSG00000182670|P53804-3|TTC3;nc|ENSG00000182670|P53804-2|TTC3;TTC3|p.H1771Tfs*34|1|0.14|ENSG00000182670|chr21:37195766-37195766|T/-|frameshift_variant;ENSG00000182670|ENST00000418766|TTC3	ENST00000399586.2_1_X:74960734-74966719:-|nuORF	ENST00000399586.2_1_X:74960734-74966719:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.798095703125	2	559.819473	1117.62439	0.27073	0.00015156	3.4654	0.00194	3.7361	0.0020916	559.8226069208312	80.607	1.5187	77.896	77.171	78.69	-2.7106					87	30	4	0	0	0	0.027441	1	6596	6596		58.782	43.14	1	212380			489	11394	334	335	778	778					0.07028523117219265
AENSSLHPE	9	Unmodified	_AENSSLHPE_					0	0	0		ENST00000543147.1_1_12:9908815-9913428:-|nuORF;ENST00000416624.6_1_12:9907639-9913428:-|nuORF;ENSG00000110848|ENST00000228434|CD69	ENST00000543147.1_1_12:9908815-9913428:-|nuORF	ENST00000543147.1_1_12:9908815-9913428:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.2733154296875	2	492.225071	982.435589	0.68086	0.00033514	-2.4447	-0.0012033	-1.7638	-0.0008682	492.2239989148729	38.388	0.29662	35.462	35.305	35.601	-2.9264					7	5	2	0	0	0	0.027462	1	1483	1483		35.618	3.6634	1	8147.2			490	2797	335	336	779	779					-0.05633174246895578
AEPEADKGTVL	11	Unmodified	_AEPEADKGTVL_					0	0	0		nc|ENSG00000239264|Q8NBS9-2|TXNDC5;ENSG00000239264|ENST00000379757|TXNDC5	nc|ENSG00000239264|Q8NBS9-2|TXNDC5	nc|ENSG00000239264|Q8NBS9-2|TXNDC5	MULTI-MSMS	OvCa99_classI_Rep5	1	565.2911376953125	2	565.290411	1128.56627	-0.19537	-0.00011044	-0.17373	-9.8207E-05	-0.3691	-0.00020865	565.2900889819576	59.859	0.9399	59.859	59.452	60.392	0					61	23	4	0	0	0	0.41331	1	5213	5213		60.167	16.516	1	5133000			491	9323	336	337	780	780					0.007127966812731756
AEPEDHYFL	9	Unmodified	_AEPEDHYFL_					0	0	0		ENSG00000115091|ENST00000263238|ACTR3;nc|ENSG00000133627|Q9P1U1-2|ACTR3B;nc|ENSG00000133627|Q9P1U1-3|ACTR3B;DPP6-ACTR3B|2|fusion;ENSG00000133627|ENST00000256001|ACTR3B;DPP6-ACTR3B|1|fusion;ENST00000541653.2_1_14:22054224-22054383:-|nuORF;ENST00000489779.1_1_2:114684960-114691984:+|nuORF	ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	MULTI-MSMS	OvCa99_classI_Rep5	1	560.751953125	2	560.750921	1119.48729	1.9636	0.0011011	0.38141	0.00021388	2.345	0.0013149	560.7510017613697	91.149	1.2225	91.149	90.656	91.879	0					92	29	4	0	0	0	0.27546	1	9808	9808		65.803	2.4969	1	9254000			492	3061	337	338	781	781					-0.06767430553009035
AEPELQYVAL	10	Unmodified	_AEPELQYVAL_					0	0	0		AP1B1|p.T737Rfs*121|1|0.13|ENSG00000100280|chr22:29334369-29334370|-/CCCA|frameshift_variant;AP1B1|p.G736Afs*18|1|0.18|ENSG00000100280|chr22:29334367-29334368|-/TACCG|frameshift_variant;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1	AP1B1|p.T737Rfs*121|1|0.13|ENSG00000100280|chr22:29334369-29334370|-/CCCA|frameshift_variant	AP1B1|p.T737Rfs*121|1|0.13|ENSG00000100280|chr22:29334369-29334370|-/CCCA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	566.7970581054688	2	566.797872	1131.58119	0.2417	0.000137	-0.58136	-0.00032951	-0.33965	-0.00019252	566.7974040314294	124.63	1.4318	124.4	123.98	125.41	-0.23193					67	28	4	0	0	0	0.64697	2	12130	12130;12143		36.447	5.9431	1	176250			493	97	338	339	782;783	782					0.020662885492811256
AEPGLRHTL	9	Unmodified	_AEPGLRHTL_					0	0	0			REV__ENSG00000155629|ENST00000339364|PIK3AP1	REV__ENSG00000155629|ENST00000339364|PIK3AP1	MSMS	OvCa9_classI_Rep2	2	496.9765625	2	497.277441	992.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	162.88	1	162.65	162.15	163.15	-0.22696								0	0	0	0.20692	1	16602	16602		25.45	0.94616	1		+		494	20432	339	340	784	784					0.04375992020322883
AEPGMWGY	8	Unmodified	_AEPGMWGY_					0	0	0		ENST00000592891.1_1_19:55831331-55832446:-|nuORF	ENST00000592891.1_1_19:55831331-55832446:-|nuORF	ENST00000592891.1_1_19:55831331-55832446:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.2696228027344	2	455.691821	909.369089	-0.09114	-4.1532E-05	-3.3847	-0.0015424	-3.4759	-0.0015839	455.6902229332652	76.821	0.5288	73.882	73.691	74.22	-2.9389					16	10	2	0	0	0	0.028476	1	6157	6157		14.664	2.4572	1	31144			495	14143	340	341	785	785					-0.08922081342495858
AEPIIETKGIS	11	Unmodified	_AEPIIETKGIS_					0	0	0			REV__tr|A0A7D7A384|A0A7D7A384_9CLOTPyrroline-5-carboxylatereductaseOS=ClostridiumintestinaleOX=36845GN=proCPE=3SV=1	REV__tr|A0A7D7A384|A0A7D7A384_9CLOTPyrroline-5-carboxylatereductaseOS=ClostridiumintestinaleOX=36845GN=proCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.3216552734375	2	579.324254	1156.63395	-1.8864	-0.0010928	-0.92101	-0.00053357	-2.8074	-0.0016264	579.3237390390577	50.507	2.0874	47.366	46.922	49.01	-3.1416					110	40	5	0	0	0	0.48812	1	2937	2937		54.722	7.065	1	2222100	+		496	32572	341	342	786	786					0.06190246612095507
AEPLEIILHL	10	Unmodified	_AEPLEIILHL_					0	0	0		ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	MULTI-MSMS	OvCa99_classI_Rep5	1	574.3399047851562	2	574.339707	1146.66486	0.5391	0.00030963	1.7371	0.00099767	2.2762	0.0013073	574.3406682338934	151.9	2.0448	151.9	151.5	153.55	0					116	45	5	0	0	0	0.03698	2	17796	17773;17796		133.81	43.036	1	4348200			497	2013	342	343	787;788	788					0.09739444717001788
AEPLGWLTV	9	Unmodified	_AEPLGWLTV_					0	0	0		nc|ENSG00000186891|Q9Y5U5-3|TNFRSF18;ENSG00000186891|ENST00000379268|TNFRSF18	nc|ENSG00000186891|Q9Y5U5-3|TNFRSF18	nc|ENSG00000186891|Q9Y5U5-3|TNFRSF18	MULTI-MSMS	OvCa9_classI_Rep3	3	493.27154541015625	2	493.271293	984.528032	-0.98844	-0.00048757	-0.59997	-0.00029595	-1.5884	-0.00078352	493.2709251990425	100.52	1.2653	98.915	98.706	99.972	-1.6053					52	24	3	0	0	0	0.22961	1	6830	6830		71.296	2.5089	1	318170			498	8373	343	344	789	789					0.03514955557284338
AEPLKIGPFL	10	Unmodified	_AEPLKIGPFL_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.2849731445312	2	542.823692	1083.63283	1.4398	0.00078154	-3.6221	-0.0019662	-2.1823	-0.0011846	542.8215907427066	112.02	0.77965	112.02	111.74	112.52	0					37	16	4	0	0	0	0.026553	1	12800	12800		47.657	5.2612	1	516220	+		499	21856	344	345	790	790					0.09436077033865331
AEPLTYKLL	9	Unmodified	_AEPLTYKLL_					0	0	0			REV__chr1:222058678-222064685|265|10.62|0.2|5.76|-|1|LINC01705,LINC01705|3	REV__chr1:222058678-222064685|265|10.62|0.2|5.76|-|1|LINC01705,LINC01705|3	MULTI-MSMS	OvCa99_classI_Rep5	1	524.3095092773438	2	524.307875	1046.6012	1.506	0.00078962	0.22676	0.00011889	1.7328	0.00090851	524.3078778271837	122.47	0.54789	122.47	122.22	122.77	0					27	11	3	0	0	0	0.27001	1	14097	14097		66.429	2.222	1	983500	+		500	15822	345	346	791	791					0.07976084279903262
AEPMEPEEN	9	Unmodified	_AEPMEPEEN_					0	0	0		sp|P09701|US23_HCMVATegumentproteinUS23OS=Humancytomegalovirus(strainAD169)OX=10360GN=US23PE=3SV=2;sp|F5HAZ3|US23_HCMVMProteinUS23OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US23PE=3SV=1	sp|P09701|US23_HCMVATegumentproteinUS23OS=Humancytomegalovirus(strainAD169)OX=10360GN=US23PE=3SV=2	sp|P09701|US23_HCMVATegumentproteinUS23OS=Humancytomegalovirus(strainAD169)OX=10360GN=US23PE=3SV=2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.3067016601562	2	523.210772	1044.40699	-0.14321	-7.4927E-05	0.42214	0.00022087	0.27893	0.00014594	523.2110250036225	109.66	0.68557	107.96	107.77	108.45	-1.6924					18	12	2	0	0	0	0.027462	1	10048	10048		53.351	12.779	1	18040			501	32850	346	347	792	792					-0.11343659938347628
AEPMEPEEN	9	Unmodified	_AEPMEPEEN_					0	0	0		sp|P09701|US23_HCMVATegumentproteinUS23OS=Humancytomegalovirus(strainAD169)OX=10360GN=US23PE=3SV=2;sp|F5HAZ3|US23_HCMVMProteinUS23OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US23PE=3SV=1	sp|P09701|US23_HCMVATegumentproteinUS23OS=Humancytomegalovirus(strainAD169)OX=10360GN=US23PE=3SV=2	sp|P09701|US23_HCMVATegumentproteinUS23OS=Humancytomegalovirus(strainAD169)OX=10360GN=US23PE=3SV=2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	523.210772	1044.40699	-0.30969	-0.00016203	0.36844	0.00019277	0.058746	3.0737E-05	523.2108998892847	109.16	0.47483	107.96	107.72	108.19	-1.1978	-0.0013606	-2.7978E-05	NaN	53.351	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10815			502	32850	346	347							-0.11343659938347628
AEPRARCCME	10	Unmodified	_AEPRARCCME_					0	0	0			REV__ENSG00000125826|ENST00000356286|RBCK1	REV__ENSG00000125826|ENST00000356286|RBCK1	MULTI-MSMS	OvCa9_classI_Rep2	2	583.2490844726562	2	583.249185	1164.48382	0.67489	0.00039363	-1.1253	-0.00065631	-0.45038	-0.00026268	583.2484035489165	130.41	1.8783	130.18	129.81	131.69	-0.22696					86	37	3	0	0	0	0.39172	1	12807	12807		69.628	16.691	1	516500	+		503	18749	347	348	793	793					-0.09184463194537784
AEPRARCCME	10	Unmodified	_AEPRARCCME_					0	0	0			REV__ENSG00000125826|ENST00000356286|RBCK1	REV__ENSG00000125826|ENST00000356286|RBCK1	MULTI-MSMS	OvCa9_classI_Rep3	3	583.2474975585938	2	583.249185	1164.48382	-1.0186	-0.00059412	0.5566	0.00032464	-0.46203	-0.00026948	583.2492999893292	131	1.923	129.88	129.51	131.44	-1.1249					92	38	4	0	0	0	0.69073	1	10467	10467		31.53	1.0262	1	472570	+		504	18749	347	348	794	794					-0.09184463194537784
AEPRLPLQL	9	Unmodified	_AEPRLPLQL_					0	0	0		ENSG00000115866|ENST00000264161|DARS1;DARS-R3HDM1|1|fusion;nc|ENSG00000115866|P14868-2|DARS1	ENSG00000115866|ENST00000264161|DARS1	ENSG00000115866|ENST00000264161|DARS1	MULTI-MSMS	OvCa99_classI_Rep5	1	518.812744140625	2	518.811116	1035.60768	1.0029	0.00052033	0.4185	0.00021712	1.4214	0.00073745	518.8111523581446	109.24	1.2888	109.24	108.89	110.18	0					52	28	3	0	0	0	0.2422	2	12362	12362;12385		69.628	18.292	1	852740			505	710	348	349	795;796	795					0.09130022231283874
AEPRLPLQL	9	Unmodified	_AEPRLPLQL_					0	0	0		ENSG00000115866|ENST00000264161|DARS1;DARS-R3HDM1|1|fusion;nc|ENSG00000115866|P14868-2|DARS1	ENSG00000115866|ENST00000264161|DARS1	ENSG00000115866|ENST00000264161|DARS1	MULTI-MSMS	OvCa9_classI_Rep2	2	518.810791015625	2	518.811116	1035.60768	0.3563	0.00018485	-0.80321	-0.00041671	-0.44691	-0.00023186	518.8106044790309	108.96	1.5339	108.73	108.27	109.81	-0.22498					87	30	4	0	0	0	0.094616	11	10222	10194;10198;10204;10211;10216;10222;10227;10234;10239;10254;10267		98.629	27.334	1	921920			506	710	348	349	797;798;799;800;801;802;803;804;805;806;807	802					0.09130022231283874
AEPRLPLQL	9	Unmodified	_AEPRLPLQL_					0	0	0		ENSG00000115866|ENST00000264161|DARS1;DARS-R3HDM1|1|fusion;nc|ENSG00000115866|P14868-2|DARS1	ENSG00000115866|ENST00000264161|DARS1	ENSG00000115866|ENST00000264161|DARS1	MULTI-MSMS	OvCa9_classI_Rep3	3	518.8112182617188	2	518.811116	1035.60768	0.23501	0.00012192	-0.8243	-0.00042766	-0.5893	-0.00030573	518.8106156837061	109.74	1.9451	108.59	107.72	109.66	-1.1444					98	36	4	0	0	0	0.084918	8	7902	7878;7883;7889;7896;7902;7907;7925;7933		101.25	21.267	1	1215100			507	710	348	349	808;809;810;811;812;813;814;815	812					0.09130022231283874
AEPRLPLQL	9	Unmodified	_AEPRLPLQL_					0	0	0		ENSG00000115866|ENST00000264161|DARS1;DARS-R3HDM1|1|fusion;nc|ENSG00000115866|P14868-2|DARS1	ENSG00000115866|ENST00000264161|DARS1	ENSG00000115866|ENST00000264161|DARS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.8108520507812	2	518.811116	1035.60768	0.56129	0.0002912	-0.83769	-0.0004346	-0.27639	-0.0001434	518.8104326125663	110.25	2.3159	108.65	108.17	110.49	-1.6011					109	43	4	0	0	0	0.10502	5	10143	10120;10131;10143;10155;10167		95.815	29.386	1	1267600			508	710	348	349	816;817;818;819;820	818					0.09130022231283874
AEPRNLSFFL	10	Unmodified	_AEPRNLSFFL_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1;ENST00000464072.1_1_2:191843483-191848388:-|nuORF	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.3179321289062	2	597.319306	1192.62406	0.092566	5.5291E-05	0.020551	1.2276E-05	0.11312	6.7567E-05	597.319080326334	121.42	0.92976	120.07	119.79	120.72	-1.3479					42	17	3	0	0	0	0.60504	1	11463	11463		41.427	4.9799	1	77810			509	3094	349	350	821	821					0.03545103397368621
AEPSKVRPEPS	11	Unmodified	_AEPSKVRPEPS_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	597.8323974609375	2	598.817127	1195.6197	-1.6937	-0.0010142	3.5074	0.0021003	1.8137	0.001086	598.8191909356024	108.02	0.78244	106.14	105.88	106.66	-1.8785					24	15	2	0	0	0	0.025701	1	9935	9935		29.17	0	1	37286	+		510	28942	350	351	822	822					0.02971594183804882
AEPSSDLASKL	11	Unmodified	_AEPSSDLASKL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	559.2904052734375	2	559.290411	1116.56627	2.9167	0.0016313	-1.166	-0.00065212	1.7507	0.00097915	559.2897229148696	76.015	1.198	76.015	75.601	76.799	0					67	29	3	0	0	0	0.29406	1	7584	7584		68.846	10.616	1	2653300			511	3744	351	352	823	823					0.012647966812892264
AEQEIARLVL	10	Unmodified	_AEQEIARLVL_					0	0	0		ENST00000486056.1_1_9:35733177-35736720:+|nuORF;nc|ENSG00000107175|O43889-3|CREB3;ENSG00000107175|ENST00000353704|CREB3	ENST00000486056.1_1_9:35733177-35736720:+|nuORF	ENST00000486056.1_1_9:35733177-35736720:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	571.33447265625	2	571.332413	1140.65027	-1.4165	-0.00080931	0.94754	0.00054136	-0.46899	-0.00026795	571.3327764157042	107.02	0.88624	105.15	104.85	105.74	-1.8785					46	16	4	0	0	0	0.62712	1	9762	9762		38.754	1.5945	1	241770			512	2592	352	353	824	824					0.08557372568861865
AEQFPRQVL	9	Unmodified	_AEQFPRQVL_					0	0	0		ENSG00000134717|ENST00000313334|BTF3L4;nc|ENSG00000134717|Q96K17-2|BTF3L4	ENSG00000134717|ENST00000313334|BTF3L4	ENSG00000134717|ENST00000313334|BTF3L4	MULTI-MSMS	OvCa9_classI_Rep3	3	544.3009643554688	2	544.298373	1086.58219	-1.0776	-0.00058652	-0.23015	-0.00012527	-1.3077	-0.00071179	544.2982149358995	84.489	1.1587	82.228	81.836	82.994	-2.261					56	22	3	0	0	0	0.23241	2	4897	4897;4903		70.816	10.885	1	285670			513	4321	353	354	825;826	825					0.04236547708865146
AEQFPRQVL	9	Unmodified	_AEQFPRQVL_					0	0	0		ENSG00000134717|ENST00000313334|BTF3L4;nc|ENSG00000134717|Q96K17-2|BTF3L4	ENSG00000134717|ENST00000313334|BTF3L4	ENSG00000134717|ENST00000313334|BTF3L4	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.299560546875	2	544.298373	1086.58219	0.67225	0.0003659	-2.3077	-0.0012561	-1.6354	-0.00089015	544.2969359767418	84.93	1.4506	82.284	81.792	83.243	-2.6463					63	29	3	0	0	0	0.29519	3	7137	7113;7137;7149		63.534	3.4156	1	205510			514	4321	353	354	827;828;829	828					0.04236547708865146
AEQGLRIPLP	10	Unmodified	_AEQGLRIPLP_					0	0	0		ENST00000395782.5_1_17:17412858-17480243:-|nuORF	ENST00000395782.5_1_17:17412858-17480243:-|nuORF	ENST00000395782.5_1_17:17412858-17480243:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.3231811523438	2	547.321848	1092.62914	-1.2803	-0.00070076	1.1759	0.00064361	-0.10443	-5.7157E-05	547.3223975818019	55.174	1.4231	51.927	51.644	53.067	-3.2474					60	27	4	0	0	0	0.22663	1	3466	3466		90.37	13.052	1	532540			515	11300	354	355	830	830					0.08653407259998858
AEQGLRIPLP	10	Unmodified	_AEQGLRIPLP_					0	0	0		ENST00000395782.5_1_17:17412858-17480243:-|nuORF	ENST00000395782.5_1_17:17412858-17480243:-|nuORF	ENST00000395782.5_1_17:17412858-17480243:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	547.321848	1092.62914	-0.98869	-0.00054113	0.66167	0.00036215	-0.32702	-0.00017898	547.3220080667369	54.827	1.0978	52.013	51.673	52.77	-2.8139	0.043177	-0.00043783	NaN	90.37	45	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136710			516	11300	354	355							0.08653407259998858
AEQIKHIL	8	Unmodified	_AEQIKHIL_					0	0	0		ENST00000490277.1_1_13:45913571-45913754:-|nuORF;ENST00000458298.1_1_6:86137181-86137394:-|nuORF;nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1	ENST00000490277.1_1_13:45913571-45913754:-|nuORF	ENST00000490277.1_1_13:45913571-45913754:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	476.2850036621094	2	476.284734	950.554916	-0.6069	-0.00028906	0.59542	0.00028359	-0.011472	-5.464E-06	476.2848782734841	58.479	2.2012	55.699	55.184	57.386	-2.7801					103	42	4	0	0	0	0.082392	2	4194	4194;4242		148.04	18.36	1	618100			517	4202	355	356	831;832	831					0.07766064168458797
AEQITVVLA	9	Unmodified	_AEQITVVLA_					0	0	0			REV__ENSG00000132718|ENST00000368324|SYT11	REV__ENSG00000132718|ENST00000368324|SYT11	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.2768859863281	2	472.276575	942.538597	1.9894	0.00093956	-3.1928	-0.0015079	-1.2034	-0.00056833	472.27494541106154	86.348	1.6386	83.714	83.256	84.895	-2.6334					75	32	4	0	0	0	0.16562	1	7292	7292		82.241	0	1	972950	+		518	19101	356	357	833	833					0.06502938211701803
AEQKLQQTL	9	Unmodified	_AEQKLQQTL_					0	0	0		PPFIA1|p.R461Kfs*27|1|0.07|ENSG00000131626|chr11:70335647-70335648|-/AGGTCATTGCTCGGCTGTGG|frameshift_variant;PPFIA1|p.L1093Tfs*23|1|0.06|ENSG00000131626|chr11:70375053-70375054|-/T|frameshift_variant;nc|ENSG00000131626|Q13136-2|PPFIA1;ENSG00000131626|ENST00000253925|PPFIA1	PPFIA1|p.R461Kfs*27|1|0.07|ENSG00000131626|chr11:70335647-70335648|-/AGGTCATTGCTCGGCTGTGG|frameshift_variant	PPFIA1|p.R461Kfs*27|1|0.07|ENSG00000131626|chr11:70335647-70335648|-/AGGTCATTGCTCGGCTGTGG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.7964477539062	2	529.795663	1057.57677	-1.0003	-0.00052995	0.089608	4.7474E-05	-0.91068	-0.00048247	529.7958749758516	58.72	1.2974	55.328	54.852	56.149	-3.392					60	25	4	0	0	0	0.010153	2	3878	3878;3890		168.26	33.493	1	652940			519	4078	357	358	834;835	834					0.05028824126384279
AEQKVEYTL	9	Unmodified	_AEQKVEYTL_					0	0	0		ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	540.7832641601562	2	540.782222	1079.54989	-0.081953	-4.4318E-05	0.015524	8.3952E-06	-0.066428	-3.5923E-05	540.7821938014241	69.206	1.3855	69.206	68.9	70.286	0					78	33	4	0	0	0	0.040625	2	6580	6551;6580		126.24	22.186	1	11864000			520	3048	358	359	836;837	837					0.013297155152031337
AEQKVEYTL	9	Unmodified	_AEQKVEYTL_					0	0	0		ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.782958984375	2	540.782222	1079.54989	-1.9395	-0.0010488	1.1155	0.00060325	-0.82396	-0.00044558	540.7826984010426	72.434	1.5046	69.038	68.716	70.22	-3.3961					79	30	3	0	0	0	0.056671	2	5588	5576;5588		114.89	36.52	1	1150000			521	3048	358	359	838;839	839					0.013297155152031337
AEQKVEYTL	9	Unmodified	_AEQKVEYTL_					0	0	0		ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	540.782222	1079.54989	-0.106	-5.7322E-05	0.09789	5.2937E-05	-0.0081081	-4.3847E-06	540.7820849759925	71.533	1.4661	69.026	68.541	70.008	-2.5072	-0.064264	-0.00060627	NaN	126.24	75	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226470			522	3048	358	359							0.013297155152031337
AEQNKKILD	9	Unmodified	_AEQNKKILD_					0	0	0		tr|A0A553STP2|A0A553STP2_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05540PE=3SV=1	tr|A0A553STP2|A0A553STP2_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05540PE=3SV=1	tr|A0A553STP2|A0A553STP2_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05540PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7686157226562	2	529.795663	1057.57677	3.229	0.0017107	-1.6493	-0.00087382	1.5796	0.00083689	529.7940408594311	97.493	1.7045	97.493	96.543	98.247	0					73	39	3	0	0	0	0.027459	1	10578	10578		29.17	0	1	2200900			523	34514	359	360	840	840					0.05028824126384279
AEQQGKGVAL	10	Unmodified	_AEQQGKGVAL_					0	0	0		ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	500.7749938964844	2	500.774731	999.534909	-0.025494	-1.2767E-05	-0.35808	-0.00017932	-0.38358	-0.00019209	500.77443652127243	46.608	0.57282	46.608	46.412	46.985	0					30	12	3	0	0	0	0.40664	1	3304	3304		67.494	7.3754	1	1258200			524	3048	360	361	841	841					0.03512268437862076
AEQRGELAL	9	Unmodified	_AEQRGELAL_					0	0	0		CON__Q5XQN5;CON__Q922U2;CON__P07744;ENSG00000170454|ENST00000252245|KRT75;CON__O95678;nc|ENSG00000170423|Q8N1N4-2|KRT78;ENSG00000170423|ENST00000304620|KRT78;CON__Q8N1N4-2;CON__Q7RTT2;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647	CON__Q5XQN5;ENST00000552629.5_1_12:52910419-52914113:-|nuORF	ENST00000552629.5_1_12:52910419-52914113:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	493.765869140625	2	493.766906	985.519259	-0.73998	-0.00036538	-0.23368	-0.00011539	-0.97367	-0.00048076	493.76710400194355	68.35	1.8857	65.73	65.18	67.066	-2.6203					109	37	6	0	0	0	0.3249	1	5369	5369		60.118	0	1	960960		+	525	653;627	361	362	842	842					0.025919819208070294
AEQTLRAEL	9	Unmodified	_AEQTLRAEL_					0	0	0		ENSG00000226321|ENST00000690015|CROCC2	ENSG00000226321|ENST00000690015|CROCC2	ENSG00000226321|ENST00000690015|CROCC2	MULTI-MSMS	OvCa99_classI_Rep5	1	515.7814331054688	2	515.780013	1029.54547	1.0439	0.00053842	-2.1842	-0.0011266	-1.1403	-0.00058815	515.7786163340129	146.25	0.59102	146.25	146.03	146.62	0					27	11	3	0	0	0	0.34132	1	17120	17120		58.23	1.5089	1	116250			526	9270	362	363	843	843					0.03188251092274186
AERAKPEMSR	10	Unmodified	_AERAKPEMSR_					0	0	0		nc|ENSG00000176601|Q56UN5-3|MAP3K19;ENSG00000176601|ENST00000392915|MAP3K19	nc|ENSG00000176601|Q56UN5-3|MAP3K19	nc|ENSG00000176601|Q56UN5-3|MAP3K19	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.8311157226562	2	587.803497	1173.59244	0.27028	0.00015887	3.7403	0.0021985	4.0106	0.0023574	588.3063884901211	46.068	0.57127	46.068	45.754	46.326	0					17	12	2	0	0	0	0.026548	1	3226	3226		46.457	5.0302	1	160480			527	7617	363	364	844	844					0.012587873717620823
AERAVRREKE	10	Unmodified	_AERAVRREKE_					0	0	0			REV__LARGE-OPA3|2|fusion	REV__LARGE-OPA3|2|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	622.34619140625	2	622.346917	1242.67928	1.3021	0.00081034	0.75561	0.00047025	2.0577	0.0012806	622.3472573537882	119.23	1.2864	118.2	117.83	119.12	-1.0271					70	25	4	0	0	0	0.38315	1	9025	9025		70.816	9.1249	1	444560	+		528	28614	364	365	845	845					0.06764909917842488
AEREVSVPTF	10	Unmodified	_AEREVSVPTF_					0	0	0		ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-3|FADS2	ENSG00000134824|ENST00000278840|FADS2	ENSG00000134824|ENST00000278840|FADS2	MULTI-MSMS	OvCa9_classI_Rep2	2	567.7926025390625	2	567.793121	1133.57169	1.4773	0.0008388	-1.3885	-0.00078837	0.088827	5.0435E-05	567.7921752278237	89.526	1.4353	88.224	87.642	89.077	-1.302					99	28	6	0	0	0	0.55109	1	7873	7873		47.96	3.5823	1	378540			529	4334	365	366	846	846					0.010245202637634065
AEREVSVPTF	10	Unmodified	_AEREVSVPTF_					0	0	0		ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-3|FADS2	ENSG00000134824|ENST00000278840|FADS2	ENSG00000134824|ENST00000278840|FADS2	MULTI-MSMS	OvCa9_classI_Rep3	3	567.7944946289062	2	567.793121	1133.57169	-0.74366	-0.00042224	0.56875	0.00032293	-0.17491	-9.931E-05	567.7933805931018	90.163	1.4315	88.082	87.541	88.973	-2.0805					79	27	4	0	0	0	0.48398	1	5582	5582		56.434	0.92959	1	748140			530	4334	365	366	847	847					0.010245202637634065
AEREVSVPTF	10	Unmodified	_AEREVSVPTF_					0	0	0		ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-3|FADS2	ENSG00000134824|ENST00000278840|FADS2	ENSG00000134824|ENST00000278840|FADS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.7946166992188	2	567.793121	1133.57169	0.56966	0.00032345	-0.68826	-0.00039079	-0.11859	-6.7335E-05	567.7926160895012	90.604	1.2294	88.029	87.65	88.879	-2.575					66	23	4	0	0	0	0.25842	3	7819	7806;7819;7833		85.862	25.744	1	656590			531	4334	365	366	848;849;850	849					0.010245202637634065
AEREWLRRYFH	11	Unmodified	_AEREWLRRYFH_					0	0	0			REV__ENSG00000170468|ENST00000304061|RIOX1	REV__ENSG00000170468|ENST00000304061|RIOX1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.7677612304688	3	521.604019	1561.79023	0.092569	4.8284E-05	-0.0055011	-2.8694E-06	0.087068	4.5415E-05	521.6040007799766	74.394	0.34033	74.394	74.176	74.517	0					14	8	2	0	0	0	0.026364	1	7357	7357		18.531	5.0231	1	243290	+		532	21541	366	367	851	851					0.031805496259266874
AERFNVPVSL	10	Unmodified	_AERFNVPVSL_					0	0	0		ENSG00000205323|ENST00000336133|SARNP;ENST00000552207.1_1_12:56188062-56211500:-|nuORF	ENSG00000205323|ENST00000336133|SARNP	ENSG00000205323|ENST00000336133|SARNP	MULTI-MSMS	OvCa9_classI_Rep3	3	566.310546875	2	566.31148	1130.60841	0.25991	0.00014719	-0.60759	-0.00034409	-0.34768	-0.00019689	566.3110208704823	105.99	0.99156	104.64	104.4	105.4	-1.3482					58	18	4	0	0	0	0.50873	1	7454	7454		53.089	0.15226	1	348950			533	9064	367	368	852	852					0.04832816880343671
AERFNVPVSL	10	Unmodified	_AERFNVPVSL_					0	0	0		ENSG00000205323|ENST00000336133|SARNP;ENST00000552207.1_1_12:56188062-56211500:-|nuORF	ENSG00000205323|ENST00000336133|SARNP	ENSG00000205323|ENST00000336133|SARNP	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.3120727539062	2	566.31148	1130.60841	-0.13049	-7.3899E-05	-0.23943	-0.00013559	-0.36992	-0.00020949	566.3112007083625	106.59	1.2951	104.68	104.41	105.71	-1.9115					55	21	3	0	0	0	0.47131	1	9700	9700		58.246	12.274	1	326300			534	9064	367	368	853	853					0.04832816880343671
AERFNVPVSL	10	Unmodified	_AERFNVPVSL_					0	0	0		ENSG00000205323|ENST00000336133|SARNP;ENST00000552207.1_1_12:56188062-56211500:-|nuORF	ENSG00000205323|ENST00000336133|SARNP	ENSG00000205323|ENST00000336133|SARNP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	566.31148	1130.60841	-0.49875	-0.00028245	0.0046265	2.62E-06	-0.49413	-0.00027983	566.3113905069746	105.2	1.0428	104.77	104.46	105.5	-0.43642	0.072493	0.00024312	NaN	58.246	56	20	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299600			535	9064	367	368							0.04832816880343671
AERIRAGGAGV	11	Unmodified	_AERIRAGGAGV_					0	0	0		ENSG00000083720|ENST00000196371|OXCT1;ENSG00000198754|ENST00000327582|OXCT2	ENSG00000083720|ENST00000196371|OXCT1	ENSG00000083720|ENST00000196371|OXCT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.3154907226562	2	528.799072	1055.58359	-0.48378	-0.00025582	1.9362	0.0010239	1.4524	0.00076803	529.3018611110015	33.558	0.34598	33.558	33.335	33.681	0					9	6	2	0	0	0	0.02538	1	1528	1528		37.812	4.9991	1	29755			536	1698	368	369	854	854					0.05802181797616868
AERLFENQL	9	Unmodified	_AERLFENQL_					0	0	0		ENSG00000101474|ENST00000217456|APMAP;nc|ENSG00000101474|Q9HDC9-2|APMAP	ENSG00000101474|ENST00000217456|APMAP	ENSG00000101474|ENST00000217456|APMAP	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.2943115234375	2	560.293288	1118.57202	0.39903	0.00022357	-0.32137	-0.00018006	0.077654	4.3509E-05	560.2929611147479	88.963	1.3372	86.36	86.085	87.422	-2.6027					45	26	2	0	0	0	0.084152	2	7610	7610;7624		101.46	10.873	1	419020			537	2183	369	370	855;856	855					0.017479399836020093
AERLFENQL	9	Unmodified	_AERLFENQL_					0	0	0		ENSG00000101474|ENST00000217456|APMAP;nc|ENSG00000101474|Q9HDC9-2|APMAP	ENSG00000101474|ENST00000217456|APMAP	ENSG00000101474|ENST00000217456|APMAP	MULTI-MATCH	OvCa99_classI_Rep5	1		2	560.293288	1118.57202	2.9639	0.0016607	-1.8803	-0.0010535	1.0836	0.00060715	560.7928388981554	86.195	0.27817	86.195	86.033	86.311	0	-0.084124	-0.0022631	NaN	101.46	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169210			538	2183	369	370							0.017479399836020093
AERLFENQL	9	Unmodified	_AERLFENQL_					0	0	0		ENSG00000101474|ENST00000217456|APMAP;nc|ENSG00000101474|Q9HDC9-2|APMAP	ENSG00000101474|ENST00000217456|APMAP	ENSG00000101474|ENST00000217456|APMAP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	560.293288	1118.57202	1.898	0.0010634	3.1772	0.0017802	5.0752	0.0028436	560.2921317539659	87.651	1.9399	86.22	85.228	87.168	-1.4311	-0.058845	0.0034042	NaN	101.46	85	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228540			539	2183	369	370							0.017479399836020093
AERLFENQL	9	Unmodified	_AERLFENQL_					0	0	0		ENSG00000101474|ENST00000217456|APMAP;nc|ENSG00000101474|Q9HDC9-2|APMAP	ENSG00000101474|ENST00000217456|APMAP	ENSG00000101474|ENST00000217456|APMAP	MULTI-MATCH	OvCa9_classI_Rep3	3		2	560.293288	1118.57202	-0.74165	-0.00041554	0.33607	0.0001883	-0.40558	-0.00022724	560.2930609311735	88.471	1.1285	86.34	86.061	87.189	-2.1309	0.061558	0.00022053	NaN	101.46	52	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	484040			540	2183	369	370							0.017479399836020093
AERLLTFI	8	Unmodified	_AERLLTFI_					0	0	0		ENST00000602523.1_1_10:22610509-22615561:+|nuORF	ENST00000602523.1_1_10:22610509-22615561:+|nuORF	ENST00000602523.1_1_10:22610509-22615561:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.787109375	2	481.78711	961.559667	-1.4604	-0.0007036	1.3039	0.00062822	-0.15644	-7.5373E-05	481.7875262663026	106.97	0.98602	105.09	104.8	105.79	-1.8785					48	18	4	0	0	0	0.64026	1	9756	9756		55.504	2.1528	1	174350			541	14238	370	371	857	857					0.07734948311224343
AERLLTFI	8	Unmodified	_AERLLTFI_					0	0	0		ENST00000602523.1_1_10:22610509-22615561:+|nuORF	ENST00000602523.1_1_10:22610509-22615561:+|nuORF	ENST00000602523.1_1_10:22610509-22615561:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	481.78711	961.559667	-0.62304	-0.00030017	0.39487	0.00019024	-0.22817	-0.00010993	481.78714702148784	105.35	1.4963	104.91	104.65	106.15	-0.43642	-0.11358	5.5653E-05	NaN	55.504	63	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136090			542	14238	370	371							0.07734948311224343
AERLLTFI	8	Unmodified	_AERLLTFI_					0	0	0		ENST00000602523.1_1_10:22610509-22615561:+|nuORF	ENST00000602523.1_1_10:22610509-22615561:+|nuORF	ENST00000602523.1_1_10:22610509-22615561:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	481.78711	961.559667	0.51161	0.00024649	-0.65217	-0.00031421	-0.14055	-6.7716E-05	481.78665625201654	106.34	1.4003	105.07	104.8	106.2	-1.267	0.044642	-0.00095325	NaN	55.504	54	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177920			543	14238	370	371							0.07734948311224343
AERLPLTPVSL	11	Unmodified	_AERLPLTPVSL_					0	0	0		ENSG00000145623|ENST00000274276|OSMR;nc|ENSG00000145623|Q99650-2|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MULTI-MSMS	OvCa9_classI_Rep2	2	598.3544921875	2	598.355888	1194.69722	0.0966	5.7801E-05	-0.47345	-0.00028329	-0.37685	-0.00022549	598.3555857649493	113.26	1.4319	113.14	112.77	114.2	-0.12174					64	28	3	0	0	0	0.20362	7	10734	10729;10734;10739;10744;10751;10757;10765		79.489	24.586	1	187900			544	5232	371	372	858;859;860;861;862;863;864	859					0.10766232119999586
AERLPLTPVSL	11	Unmodified	_AERLPLTPVSL_					0	0	0		ENSG00000145623|ENST00000274276|OSMR;nc|ENSG00000145623|Q99650-2|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MULTI-MSMS	OvCa9_classI_Rep3	3	598.3553466796875	2	598.355888	1194.69722	1.7755	0.0010624	-2.3304	-0.0013944	-0.55483	-0.00033199	598.3545660159793	114.03	1.2623	112.97	112.68	113.95	-1.055					65	24	4	0	0	0	0.10199	4	8412	8396;8408;8412;8419		96.665	41.943	1	254140			545	5232	371	372	865;866;867;868	867					0.10766232119999586
AERLPLTPVSL	11	Unmodified	_AERLPLTPVSL_					0	0	0		ENSG00000145623|ENST00000274276|OSMR;nc|ENSG00000145623|Q99650-2|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MULTI-MSMS	OvCa9_classI_Rep4_	4	598.3543701171875	2	598.355888	1194.69722	1.1372	0.00068044	-3.5121	-0.0021015	-2.3749	-0.001421	598.3529238644488	114.3	1.3388	112.86	112.34	113.67	-1.4461					60	25	4	0	0	0	0.27273	3	10629	10608;10618;10629		70.399	38.869	1	249520			546	5232	371	372	869;870;871	871					0.10766232119999586
AERMVNLVD	9	Unmodified	_AERMVNLVD_					0	0	0			REV__tr|A0A553SL61|A0A553SL61_NIACIStageIVsporulationproteinAOS=NialliacirculansOX=1397GN=spoIVAPE=4SV=1	REV__tr|A0A553SL61|A0A553SL61_NIACIStageIVsporulationproteinAOS=NialliacirculansOX=1397GN=spoIVAPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.8248291015625	2	523.768591	1045.52263	-1.2854	-0.00067328	-3.8577	-0.0020206	-5.1432	-0.0026938	524.7701244804156	81.319	0.73575	78.608	78.298	79.033	-2.7106					19	9	3	0	0	0	0.027418	1	6721	6721		52.937	1.6012	1	56602	+		547	30191	372	373	872	872					0.0016890870317638473
AERMVNLVD	9	Unmodified	_AERMVNLVD_					0	0	0			REV__tr|A0A553SL61|A0A553SL61_NIACIStageIVsporulationproteinAOS=NialliacirculansOX=1397GN=spoIVAPE=4SV=1	REV__tr|A0A553SL61|A0A553SL61_NIACIStageIVsporulationproteinAOS=NialliacirculansOX=1397GN=spoIVAPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	523.768591	1045.52263	-0.55184	-0.00028904	-4.9912	-0.0026142	-5.543	-0.0029032	523.7653035310979	81.042	0.311	78.719	78.543	78.854	-2.3226	0.055551	-0.00072302	NaN	52.937	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13703	+		548	30191	372	373							0.0016890870317638473
AERNVLPVL	9	Unmodified	_AERNVLPVL_					0	0	0		nc|ENSG00000102763|A3KMH1-2|VWA8;nc|ENSG00000102763|A3KMH1-3|VWA8;ENSG00000102763|ENST00000379310|VWA8	nc|ENSG00000102763|A3KMH1-2|VWA8	nc|ENSG00000102763|A3KMH1-2|VWA8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.7938537597656	2	505.803291	1009.59203	-1.9108	-0.00096647	1.3714	0.00069367	-0.53934	-0.0002728	505.8037711278869	49.219	2.5917	46.077	44.904	47.496	-3.1416					94	49	3	0	0	0	0.027448	1	2685	2685		35.618	0	1	34121			549	2252	373	374	873	873					0.08761735714222141
AERPGEAAV	9	Unmodified	_AERPGEAAV_					0	0	0		ENSG00000277443|ENST00000612661|MARCKS	ENSG00000277443|ENST00000612661|MARCKS	ENSG00000277443|ENST00000612661|MARCKS	MULTI-MSMS	OvCa9_classI_Rep2	2	450.2325744628906	2	450.232699	898.450845	2.8356	0.0012767	-2.8569	-0.0012863	-0.021271	-9.5771E-06	450.23128469538574	44.037	1.542	41.328	40.955	42.497	-2.7097					76	30	4	0	0	0	0.16562	7	2482	2473;2476;2482;2487;2494;2502;2508		82.241	18.033	1	858500			550	9584	374	375	874;875;876;877;878;879;880	876					-0.0024426265905503897
AERPGEAAV	9	Unmodified	_AERPGEAAV_					0	0	0		ENSG00000277443|ENST00000612661|MARCKS	ENSG00000277443|ENST00000612661|MARCKS	ENSG00000277443|ENST00000612661|MARCKS	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.2335205078125	2	450.232699	898.450845	-0.47401	-0.00021342	0.45359	0.00020422	-0.020425	-9.196E-06	450.232831869799	43.973	2.6125	40.966	40.641	43.254	-3.0074					107	50	4	0	0	0	0.13504	3	2167	2143;2167;2180		87.696	21.267	1	2585300			551	9584	374	375	881;882;883	882					-0.0024426265905503897
AERTRTDPT	9	Unmodified	_AERTRTDPT_					0	0	0			REV__ENST00000484352.5_1_2:74757313-74758690:+|nuORF	REV__ENST00000484352.5_1_2:74757313-74758690:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.2796020507812	2	523.764894	1045.51524	-0.63684	-0.00033355	-1.6032	-0.00083969	-2.24	-0.0011732	523.7641487809304	77.851	1.0172	75.034	74.536	75.554	-2.8165					26	20	2	0	0	0	0.027462	1	6191	6191		26.693	12.918	1	55133	+		552	18236	375	376	884	884					-0.00570107572912093
AERVEIEV	8	Unmodified	_AERVEIEV_					0	0	0		tr|A0A553SK72|A0A553SK72_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18265PE=4SV=1	tr|A0A553SK72|A0A553SK72_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18265PE=4SV=1	tr|A0A553SK72|A0A553SK72_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18265PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	472.7576599121094	2	472.756007	943.497461	-0.63547	-0.00030042	0.59525	0.00028141	-0.040218	-1.9013E-05	472.756115924002	66.165	0.75122	66.165	65.867	66.619	0					45	18	4	0	0	0	0.29515	1	6114	6114		108.09	14.081	1	3712700			553	33587	376	377	885	885					0.023451771722420744
AERVEIEV	8	Unmodified	_AERVEIEV_					0	0	0		tr|A0A553SK72|A0A553SK72_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18265PE=4SV=1	tr|A0A553SK72|A0A553SK72_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18265PE=4SV=1	tr|A0A553SK72|A0A553SK72_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18265PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	472.756007	943.497461	-0.83691	-0.00039565	1.0582	0.00050029	0.22133	0.00010464	472.75657775542294	69.041	0.64751	66.421	66.068	66.715	-2.6203	0.13101	0.00043228	NaN	108.09	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21197			554	33587	376	377							0.023451771722420744
AERVEIEV	8	Unmodified	_AERVEIEV_					0	0	0		tr|A0A553SK72|A0A553SK72_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18265PE=4SV=1	tr|A0A553SK72|A0A553SK72_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18265PE=4SV=1	tr|A0A553SK72|A0A553SK72_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18265PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	472.756007	943.497461	-0.021657	-1.0238E-05	0.42877	0.0002027	0.40711	0.00019246	472.7560658478178	69.765	0.73059	66.284	66.105	66.836	-3.4812	-0.0063095	-0.00016289	NaN	108.09	36	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106970			555	33587	376	377							0.023451771722420744
AERVGLAAL	9	Unmodified	_AERVGLAAL_					0	0	0		ENSG00000146282|ENST00000369536|RARS2;ENST00000497828.1_1_6:88228346-88228628:-|nuORF	ENSG00000146282|ENST00000369536|RARS2	ENSG00000146282|ENST00000369536|RARS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.2698974609375	2	450.269084	898.523616	0.66588	0.00029983	-1.2562	-0.00056561	-0.59027	-0.00026578	450.2683337986321	61.743	3.9648	58.286	57.567	61.531	-3.4577					187	81	5	0	0	0	0.33652	1	4297	4297		58.782	3.2778	1	30469000			556	5282	377	378	886	886					0.07029491134380805
AERVGLAALII	11	Unmodified	_AERVGLAALII_					0	0	0		ENSG00000146282|ENST00000369536|RARS2;ENST00000497828.1_1_6:88228346-88228628:-|nuORF	ENSG00000146282|ENST00000369536|RARS2	ENSG00000146282|ENST00000369536|RARS2	MULTI-MSMS	OvCa9_classI_Rep3	3	563.3544921875	2	563.353148	1124.69174	-1.0854	-0.00061147	0.27756	0.00015637	-0.80785	-0.00045511	563.3535121729102	117.2	1.8826	116.17	115.84	117.73	-1.0324					63	37	2	0	0	0	0.3578	2	8770	8770;8776		64.207	9.431	1	2467900			557	5282	378	379	887;888	887					0.1343855332820567
AESCYINI	8	Unmodified	_AESCYINI_					0	0	0		nc|ENSG00000070159|P26045-3|PTPN3;nc|ENSG00000070159|P26045-2|PTPN3;PTPN3|p.E797Dfs*21|1|0.03|ENSG00000070159|chr9:109382439-109382440|-/CAGAAAGTGCCAGCCACCG|frameshift_variant;ENSG00000070159|ENST00000374541|PTPN3	nc|ENSG00000070159|P26045-3|PTPN3	nc|ENSG00000070159|P26045-3|PTPN3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.76812744140625	2	456.710211	911.405868	0.32061	0.00014643	-1.1722	-0.00053537	-0.85163	-0.00038895	456.70951772632884	61.695	0.37408	58.237	57.916	58.29	-3.4577					11	7	2	0	0	0	0.028476	1	4204	4204		18.324	6.1176	1	10599			558	1420	379	380	889	889					-0.05337829516622605
AESEKSQKL	9	Unmodified	_AESEKSQKL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.K1766Qfs*38|1|0.11|ENSG00000137497|chr11:72007356-72007357|-/G|frameshift_variant	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	OvCa99_classI_Rep5	1	510.2720947265625	2	510.272021	1018.52949	-0.72516	-0.00037003	-0.82788	-0.00042244	-1.553	-0.00079247	510.27116847576144	26.32	0.60024	26.32	26.042	26.642	0					18	11	3	0	0	0	0.56189	1	677	677		36.447	1.2947	1	126660			559	4591	380	381	890	890					0.020965448553852184
AESGAKEEL	9	Unmodified	_AESGAKEEL_					0	0	0		ENSG00000277443|ENST00000612661|MARCKS	ENSG00000277443|ENST00000612661|MARCKS	ENSG00000277443|ENST00000612661|MARCKS	MULTI-MSMS	OvCa99_classI_Rep5	1	467.2297058105469	2	467.229822	932.445091	-0.77084	-0.00036016	-0.17249	-8.0594E-05	-0.94333	-0.00044075	467.22976900920787	37.182	1.2764	37.182	36.931	38.207	0					83	27	5	0	0	0	0.018335	2	2032	2008;2032		148.99	33.528	1	12822000			560	9584	381	382	891;892	892					-0.023834059613704994
AESIEMVRALF	11	Unmodified	_AESIEMVRALF_					0	0	0			REV__tr|A0A7D6ZZ20|A0A7D6ZZ20_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18605PE=4SV=1	REV__tr|A0A7D6ZZ20|A0A7D6ZZ20_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18605PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	632.375732421875	2	633.331556	1264.64856	-0.77035	-0.00048789	-3.8628	-0.0024464	-4.6331	-0.0029343	633.3295365228452	85.531	0.20126	83.31	83.184	83.386	-2.2204					6	3	2	0	0	0	0.02557	1	5029	5029		31.53	0	1	9463.6	+		561	32396	382	383	893	893					0.026819954885922925
AESKRVRIAPK	11	Unmodified	_AESKRVRIAPK_					0	0	0		FOXM1|p.H413_S414insEAE|1|0.07|ENSG00000111206|chr12:2864346-2864347|-/TTCTGCCTC|inframe_insertion	FOXM1|p.H413_S414insEAE|1|0.07|ENSG00000111206|chr12:2864346-2864347|-/TTCTGCCTC|inframe_insertion	FOXM1|p.H413_S414insEAE|1|0.07|ENSG00000111206|chr12:2864346-2864347|-/TTCTGCCTC|inframe_insertion	MULTI-MSMS	OvCa9_classI_Rep2	2	627.8853759765625	2	627.885678	1253.7568	1.5846	0.00099492	-1.5011	-0.00094252	0.083456	5.2401E-05	627.8845502144422	27.594	0.6021	24.885	24.742	25.344	-2.7097					21	13	3	0	0	0	0.72479	1	497	497		18.262	4.125	1	23299			562	14336	383	384	894	894					0.1400754785402114
AESLNVRR	8	Unmodified	_AESLNVRR_					0	0	0			REV__ENSG00000167157|ENST00000372469|PRRX2	REV__ENSG00000167157|ENST00000372469|PRRX2	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.75848388671875	2	472.76724	943.519927	-0.81883	-0.00038712	-0.59807	-0.00028275	-1.4169	-0.00066987	472.7668518563034	36.596	0.53402	36.596	36.397	36.931	0					17	11	2	0	0	0	0.028476	1	1932	1932		24.203	0	1	250260	+		563	21257	384	385	895	895					0.04590821360523023
AESLSSPPLH	10	Unmodified	_AESLSSPPLH_					0	0	0			REV__ENST00000285039.11_1_18:47367738-47367792:-|nuORF	REV__ENST00000285039.11_1_18:47367738-47367792:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.3329467773438	2	519.266739	1036.51892	-0.33566	-0.0001743	0.022877	1.1879E-05	-0.31278	-0.00016242	519.2666025051068	78.104	1.0481	75.288	75.018	76.067	-2.8165					34	21	3	0	0	0	0.026915	1	6254	6254		20.947	0	1	351940	+		564	24130	385	386	896	896					0.002125622009543804
AESLWGGQDEL	11	Unmodified	_AESLWGGQDEL_					0	0	0			REV__nc|ENSG00000249948|Q9H227|GBA3	REV__nc|ENSG00000249948|Q9H227|GBA3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	602.82080078125	2	602.777667	1203.54078	-0.27269	-0.00016437	0.69584	0.00041944	0.42315	0.00025507	602.7778121097647	106.61	0.71827	104.73	104.24	104.96	-1.8785					20	13	2	0	0	0	0.025466	1	9682	9682		47.96	0	1	12747	+		565	29170	386	387	897	897					-0.05284677841154917
AESPWEALD	9	Unmodified	_AESPWEALD_					0	0	0		ENSG00000178385|ENST00000427836|PLEKHM3;nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3;nc|ENSG00000178385|Q6ZWE6-3|PLEKHM3	ENSG00000178385|ENST00000427836|PLEKHM3	ENSG00000178385|ENST00000427836|PLEKHM3	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.3024597167969	2	509.229822	1016.44509	-0.60472	-0.00030794	-4.0279	-0.0020511	-4.6326	-0.0023591	509.22756712756853	88.614	0.57984	86.483	86.315	86.895	-2.1309					17	11	2	0	0	0	0.027417	1	5436	5436		65.803	18.146	1	17102			566	7749	387	388	898	898					-0.06247405961391905
AESQHVEHEF	10	Unmodified	_AESQHVEHEF_					0	0	0		nc|ENSG00000156299|Q13009-2|TIAM1;ENSG00000156299|ENST00000541036|TIAM1	nc|ENSG00000156299|Q13009-2|TIAM1	nc|ENSG00000156299|Q13009-2|TIAM1	MULTI-MSMS	OvCa99_classI_Rep5	1	606.7717895507812	2	606.767634	1211.52072	1.8694	0.0011343	3.2369	0.001964	5.1062	0.0030983	606.7694287402875	116.87	0.81734	116.87	116.6	117.41	0					34	17	3	0	0	0	0.64697	1	13379	13379		36.447	2.2742	1	1004200			567	5834	388	389	899	899					-0.0765842878111016
AESQILKHLL	10	Unmodified	_AESQILKHLL_					0	0	0		ENSG00000166741|ENST00000299964|NNMT;ENST00000546313.1_1_11:114167278-114168881:+|nuORF	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-MSMS	OvCa99_classI_Rep5	1	576.3458862304688	2	576.342781	1150.67101	2.5163	0.0014503	-0.27355	-0.00015766	2.2428	0.0012926	576.3425285311407	90.203	1.0509	90.203	89.848	90.899	0					52	25	4	0	0	0	0.40664	1	9653	9653		67.494	2.0283	1	3677500			568	6706	389	390	900	900					0.10169962948521061
AESSHTEPD	9	Unmodified	_AESSHTEPD_					0	0	0		ENSG00000275023|ENST00000621332|MLLT6	ENSG00000275023|ENST00000621332|MLLT6	ENSG00000275023|ENST00000621332|MLLT6	MULTI-SECPEP	OvCa9_classI_Rep3	3	485.78857421875	2	486.698886	971.383219	-1.2075	-0.00058768	-4.3151	-0.0021002	-5.5226	-0.0026878	486.69626591381535	87.659	0.77317	85.483	85.241	86.015	-2.1768					25	14	3	0	0	0	0.027462	1	5330	5330		30.504	5.0535	1	35755			569	9565	390	391	901	901					-0.10361757380508152
AESVDPLRWTL	11	Unmodified	_AESVDPLRWTL_					0	0	0			REV__nc|ENSG00000130475|O14526-3|FCHO1	REV__nc|ENSG00000130475|O14526-3|FCHO1	MULTI-MSMS	OvCa9_classI_Rep4_	4	429.56365966796875	3	429.562827	1285.66665	1.5749	0.0006765	-3.171	-0.0013622	-1.5962	-0.00068566	429.56142231080725	86.656	1.2921	84.03	83.762	85.055	-2.6269					67	25	4	0	0	0	0.67712	1	7348	7348		37.508	3.4217	1	399700	+		570	15970	391	392	902	902					0.035244537349626626
AESVDPLRWTL	11	Unmodified	_AESVDPLRWTL_					0	0	0			REV__nc|ENSG00000130475|O14526-3|FCHO1	REV__nc|ENSG00000130475|O14526-3|FCHO1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	429.562827	1285.66665	-1.5902	-0.00068309	0.76546	0.00032881	-0.82474	-0.00035428	429.56307937499787	85.588	1.2042	84.098	83.752	84.956	-1.4906	-0.0086158	0.00060901	NaN	37.508	67	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	315700	+		571	15970	391	392							0.035244537349626626
AESVDPLRWTL	11	Unmodified	_AESVDPLRWTL_					0	0	0			REV__nc|ENSG00000130475|O14526-3|FCHO1	REV__nc|ENSG00000130475|O14526-3|FCHO1	MULTI-MATCH	OvCa9_classI_Rep3	3		3	429.562827	1285.66665	-0.56492	-0.00024267	0.38116	0.00016373	-0.18376	-7.8936E-05	429.56292918703446	86.398	1.2104	84.192	83.95	85.16	-2.2064	0.085384	0.00011377	NaN	37.508	61	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	535200	+		572	15970	391	392							0.035244537349626626
AESVIDVI	8	Unmodified	_AESVIDVI_					0	0	0			REV__tr|A0A7D6VMM1|A0A7D6VMM1_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12300PE=4SV=1	REV__tr|A0A7D6VMM1|A0A7D6VMM1_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12300PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	423.2362060546875	2	423.234376	844.454199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.99	1	142.99	142.49	143.49	0								0	0	0	0.30129	1	16709	16709		42.474	7.2737	1		+		573	31137	392	393	903	903					0.025749873949507673
AETAVQLFI	9	Unmodified	_AETAVQLFI_					0	0	0		ENST00000503183.1_1_5:137848440-137853282:-|nuORF;ENST00000506345.5_1_5:137847134-137853282:-|nuORF;nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1	ENST00000503183.1_1_5:137848440-137853282:-|nuORF	ENST00000503183.1_1_5:137848440-137853282:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	496.27734375	2	496.276575	990.538597	0.73112	0.00036284	1.1034	0.00054759	1.8345	0.00091043	496.27712796425055	139.93	0.60757	139.93	139.7	140.31	0					24	12	3	0	0	0	0.074342	1	16346	16346		104.75	27.972	1	153190			574	3446	393	394	904	904					0.04294938211717181
AETEARFGAQL	11	Unmodified	_AETEARFGAQL_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19	CON__P08727	CON__P08727	MULTI-MSMS	OvCa99_classI_Rep5	1	596.8037109375	2	596.801477	1191.5884	2.6865	0.0016033	-0.24927	-0.00014876	2.4373	0.0014546	596.8011277405715	75.856	0.47785	75.856	75.68	76.158	0					23	11	3	0	0	0	0.068205	1	7573	7573		104.42	28.254	1	2207600		+	575	625	394	395	905	905					0.00027021149730899197
AETEARFGAQL	11	Unmodified	_AETEARFGAQL_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19	CON__P08727	CON__P08727	MULTI-MSMS	OvCa9_classI_Rep2	2	596.7999267578125	2	596.801477	1191.5884	-0.76274	-0.0004552	0.72336	0.0004317	-0.039378	-2.3501E-05	596.8017370356298	77.702	1.7389	75.913	75.259	76.998	-1.7894					121	33	5	0	0	0	0.0043654	4	6469	6469;6473;6479;6485		166.07	77.894	1	813710		+	576	625	394	395	906;907;908;909	906					0.00027021149730899197
AETEARFGAQL	11	Unmodified	_AETEARFGAQL_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19	CON__P08727	CON__P08727	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	596.801477	1191.5884	0.51424	0.0003069	-1.3188	-0.00078709	-0.8046	-0.00048019	596.8009369131216	78.58	2.3933	75.827	75.327	77.72	-2.7528	-0.037903	-0.002117	NaN	166.07	134	49	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3487200		+	577	625	394	395							0.00027021149730899197
AETEPIVKM	9	Oxidation (M)	_AETEPIVKM(Oxidation (M))_		AETEPIVKM(1)		AETEPIVKM(130)	0	0	1		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.2677001953125	2	517.26535	1032.51615	-1.1946	-0.00061793	1.1522	0.00059597	-0.04245	-2.1958E-05	517.2657064834607	54.253	1.1274	51.005	50.619	51.747	-3.2474					52	21	4	0	0	0	0.030815	1	3358	3358		134.81	49.895	1	226320			578	2373	395	396	910	910		78			0.0011897075178239902
AETEPIVKM	9	Oxidation (M)	_AETEPIVKM(Oxidation (M))_					0	0	1		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MATCH	OvCa9_classI_Rep2	2		2	517.26535	1032.51615	-0.91545	-0.00047353	0.63461	0.00032826	-0.28083	-0.00014526	517.2656156081187	54.213	0.74727	51.399	51.025	51.772	-2.8139	0.1969	-0.00031719	NaN	134.81	25	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35156			579	2373	395	396				78			0.0011897075178239902
AETHIVLLF	9	Unmodified	_AETHIVLLF_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	MULTI-MSMS	OvCa9_classI_Rep2	2	521.7993774414062	2	521.800217	1041.58588	0.7122	0.00037162	-2.7144	-0.0014164	-2.0022	-0.0010447	521.798133945385	124.62	1.1845	124.39	124.03	125.21	-0.23193					47	23	3	0	0	0	0.34496	2	12125	12118;12125		57.811	15.337	1	135240			580	2225	396	397	911;912	912					0.0667521748271156
AETHIVLLF	9	Unmodified	_AETHIVLLF_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	ENSG00000102158|ENST00000618282|MAGT1	MULTI-MSMS	OvCa9_classI_Rep3	3	521.7993774414062	2	521.800217	1041.58588	1.4995	0.00078246	-3.035	-0.0015837	-1.5355	-0.00080122	521.7982124194368	125.43	1.0915	124.38	124.11	125.2	-1.0519					48	20	3	0	0	0	0.34496	3	9773	9762;9766;9773		57.811	9.8957	1	205620			581	2225	396	397	913;914;915	915					0.0667521748271156
AETHRRHIN	9	Unmodified	_AETHRRHIN_					0	0	0		ENSG00000162390|ENST00000343744|ACOT11;nc|ENSG00000162390|Q8WXI4|ACOT11	ENSG00000162390|ENST00000343744|ACOT11	ENSG00000162390|ENST00000343744|ACOT11	MULTI-SECPEP	OvCa9_classI_Rep2	2	566.31201171875	2	567.29977	1132.58499	-0.68085	-0.00038625	-4.4312	-0.0025138	-5.112	-0.0029	567.7993361758138	59.744	0.72331	56.974	56.62	57.343	-2.7702					16	13	2	0	0	0	0.027461	1	4361	4361		25.574	0	1	12329			582	6175	397	398	916	916					0.02399815886383294
AETLKKEKL	9	Unmodified	_AETLKKEKL_					0	0	0		nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.3250732421875	2	530.324057	1058.63356	0.051686	2.741E-05	-0.4629	-0.00024549	-0.41121	-0.00021808	530.3237135886924	37.211	1.0975	34.318	33.993	35.09	-2.8925					41	21	3	0	0	0	0.21231	1	1354	1354		74.255	19.479	1	148320			583	6329	398	399	917	917					0.10658871682880999
AETLKKEKL	9	Unmodified	_AETLKKEKL_					0	0	0		nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.324057	1058.63356	-3.1685	-0.0016803	2.6894	0.0014262	-0.47911	-0.00025408	530.3252918334191	37.057	0.83736	34.347	34.14	34.977	-2.7097	0.014745	0.0025943	NaN	74.255	22	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36251			584	6329	398	399							0.10658871682880999
AETMAKSMKTE	11	Unmodified	_AETMAKSMKTE_					0	0	0		tr|A0A553SH76|A0A553SH76_NIACISporegernimationproteinGerDOS=NialliacirculansOX=1397GN=CEQ21_12285PE=4SV=1	tr|A0A553SH76|A0A553SH76_NIACISporegernimationproteinGerDOS=NialliacirculansOX=1397GN=CEQ21_12285PE=4SV=1	tr|A0A553SH76|A0A553SH76_NIACISporegernimationproteinGerDOS=NialliacirculansOX=1397GN=CEQ21_12285PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	410.2420959472656	3	409.530029	1225.56826	1.2832	0.00052551	3.1765	0.0013009	4.4597	0.0018264	409.5313034301965	45.251	2.2414	45.251	44.215	46.456	0					89	50	2	0	0	0	0.026007	1	3086	3086		4.8861	0	1	189540			585	33245	399	400	918	918					-0.03550233896771715
AETRESTQL	9	Unmodified	_AETRESTQL_					0	0	0		nc|ENSG00000037474|Q08J23-3|NSUN2;NSUN2|p.K565Gfs*9|1|0.04|ENSG00000037474|chr5:6605316-6605317|TT/-|frameshift_variant;NSUN2|p.A684Rfs*11|1|0.06|ENSG00000037474|chr5:6600180-6600181|-/G|frameshift_variant;nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	MULTI-MSMS	OvCa99_classI_Rep5	1	517.7593383789062	2	517.759278	1033.504	-0.87547	-0.00045328	0.61919	0.00032059	-0.25629	-0.00013269	517.7594117639472	39.411	0.60156	39.411	39.196	39.798	0					30	13	4	0	0	0	0.040625	1	2310	2310		126.24	23.469	1	1253200			586	1090	400	401	919	919					-0.011409296670308322
AETRQPVVI	9	Unmodified	_AETRQPVVI_					0	0	0		TMEM53|p.L213Nfs*19|1|0.05|ENSG00000126106|chr1:44654757-44654758|-/AAATGTTCTTACCAGAGTTTAAATTT|frameshift_variant;ENSG00000126106|ENST00000372237|TMEM53	TMEM53|p.L213Nfs*19|1|0.05|ENSG00000126106|chr1:44654757-44654758|-/AAATGTTCTTACCAGAGTTTAAATTT|frameshift_variant	TMEM53|p.L213Nfs*19|1|0.05|ENSG00000126106|chr1:44654757-44654758|-/AAATGTTCTTACCAGAGTTTAAATTT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	506.7922668457031	2	506.792924	1011.57129	-1.048	-0.00053113	0.696	0.00035273	-0.35202	-0.0001784	506.7931407063647	48.213	1.4407	45.504	45.133	46.573	-2.7097					54	28	2	0	0	0	0.3076	2	2986	2986;3013		62.107	1.9892	1	333790			587	3767	401	402	920;921	920					0.06597145334569632
AETRQVLDPDP	11	Unmodified	_AETRQVLDPDP_					0	0	0			REV__ENSG00000158321|ENST00000342771|AUTS2	REV__ENSG00000158321|ENST00000342771|AUTS2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	620.8336791992188	2	620.812042	1239.60953	-1.1798	-0.00073243	-3.846	-0.0023877	-5.0258	-0.0031201	620.8097654918633	100.22	1.3619	97.9	97.417	98.779	-2.3253					65	26	4	0	0	0	0.025457	1	8972	8972		52.937	13.684	1	205190	+		588	20564	402	403	922	922					-0.0006901354142883065
AETRRQASE	9	Unmodified	_AETRRQASE_					0	0	0		LAMB2|p.A1715Sfs*4|1|0.69|ENSG00000172037|chr3:49121550-49121551|-/T|frameshift_variant;ENSG00000172037|ENST00000305544|LAMB2;ENST00000469665.1_1_3:49160056-49160527:-|nuORF	LAMB2|p.A1715Sfs*4|1|0.69|ENSG00000172037|chr3:49121550-49121551|-/T|frameshift_variant	LAMB2|p.A1715Sfs*4|1|0.69|ENSG00000172037|chr3:49121550-49121551|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.279052734375	2	524.262519	1046.51048	-0.51069	-0.00026774	-2.6545	-0.0013916	-3.1652	-0.0016594	524.7624138468956	76.17	0.31743	74.316	74.044	74.361	-1.854					8	5	2	0	0	0	0.027433	1	6270	6270		64.207	23.429	1	17402			589	7262	403	404	923	923					-0.010909917156595839
AETRTGAL	8	Unmodified	_AETRTGAL_					0	0	0			REV__ENST00000531925.5_1_19:1806419-1810672:-|nuORF	REV__ENST00000531925.5_1_19:1806419-1810672:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	409.72222900390625	2	409.721967	817.429381	0.449	0.00018397	-0.039669	-1.6253E-05	0.40933	0.00016771	409.7218339695943	41.745	0.73673	41.745	41.505	42.242	0					34	16	3	0	0	0	0.47599	1	2634	2634		79.939	5.9645	1	1103000	+		590	27222	404	405	924	924					0.013363523122507104
AETRTGAL	8	Unmodified	_AETRTGAL_					0	0	0			REV__ENST00000531925.5_1_19:1806419-1810672:-|nuORF	REV__ENST00000531925.5_1_19:1806419-1810672:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	409.721967	817.429381	0.449	0.00018397	-0.039669	-1.6253E-05	0.40933	0.00016771	409.7218339695943	41.745	0.73673	41.745	41.505	42.242	0	0	0	NaN	79.939	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1103000	+		591	27222	404	405							0.013363523122507104
AETSSHLHAL	10	Unmodified	_AETSSHLHAL_					0	0	0		ENST00000369551.5_2_1:114522093-114522683:+|nuORF	ENST00000369551.5_2_1:114522093-114522683:+|nuORF	ENST00000369551.5_2_1:114522093-114522683:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	533.2715454101562	2	533.269813	1064.52507	0.90331	0.00048171	1.0167	0.00054216	1.92	0.0010239	533.2700914816122	139.85	0.65668	139.85	139.56	140.22	0					26	13	3	0	0	0	0.33376	2	16323	16323;16347		76.774	13.24	1	232130			592	10897	405	406	925;926	925					-0.004609195675357114
AETTDNVFTL	10	Unmodified	_AETTDNVFTL_					0	0	0		nc|ENSG00000048392|Q7LG56-2|RRM2B;ENSG00000048392|ENST00000251810|RRM2B;nc|ENSG00000048392|Q7LG56-6|RRM2B;nc|ENSG00000048392|Q7LG56-4|RRM2B;nc|ENSG00000048392|Q7LG56-3|RRM2B	nc|ENSG00000048392|Q7LG56-2|RRM2B	nc|ENSG00000048392|Q7LG56-2|RRM2B	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.768310546875	2	555.769311	1109.52407	-0.48676	-0.00027053	0.36537	0.00020306	-0.12139	-6.7465E-05	555.769307791197	120.51	0.92284	119.17	118.88	119.8	-1.3444					34	17	3	0	0	0	0.15491	1	11340	11340		101.25	23.935	1	80645			593	1155	406	407	927	927					-0.02631178727074257
AETTDNVFTL	10	Unmodified	_AETTDNVFTL_					0	0	0		nc|ENSG00000048392|Q7LG56-2|RRM2B;ENSG00000048392|ENST00000251810|RRM2B;nc|ENSG00000048392|Q7LG56-6|RRM2B;nc|ENSG00000048392|Q7LG56-4|RRM2B;nc|ENSG00000048392|Q7LG56-3|RRM2B	nc|ENSG00000048392|Q7LG56-2|RRM2B	nc|ENSG00000048392|Q7LG56-2|RRM2B	MULTI-MATCH	OvCa9_classI_Rep3	3		2	555.769311	1109.52407	0.6028	0.00033502	-0.97598	-0.00054242	-0.37318	-0.0002074	555.7687555770453	120.13	0.98351	119.1	118.87	119.86	-1.0271	-0.032694	-0.00073302	NaN	101.25	31	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66414			594	1155	406	407							-0.02631178727074257
AETTKLSKP	9	Unmodified	_AETTKLSKP_					0	0	0		nc|ENSG00000116138|Q9Y2G8-2|DNAJC16;ENSG00000116138|ENST00000375847|DNAJC16;ENST00000483270.1_1_1:15886792-15891842:+|nuORF	nc|ENSG00000116138|Q9Y2G8-2|DNAJC16	nc|ENSG00000116138|Q9Y2G8-2|DNAJC16	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.7803039550781	2	487.779482	973.544411	-0.66134	-0.00032259	-0.2251	-0.0001098	-0.88644	-0.00043239	487.7793241016113	73.463	3.7347	70.067	69.64	73.374	-3.3961					176	77	5	0	0	0	0.35444	1	5763	5763		56.721	0	1	2547300			595	3158	407	408	928	928					0.05658036723366422
AETTLTPKL	9	Unmodified	_AETTLTPKL_					0	0	0			REV__tr|A0A7D6VXN8|A0A7D6VXN8_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12720PE=4SV=1	REV__tr|A0A7D6VXN8|A0A7D6VXN8_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12720PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.28265380859375	2	487.281857	972.549162	-0.75313	-0.00036699	0.06037	2.9417E-05	-0.69276	-0.00033757	487.28181617652046	95.712	2.666	93.287	92.554	95.22	-2.4256					181	52	5	0	0	0	0.2422	1	8481	8481		69.628	3.1983	1	3865200	+		596	31782	408	409	929	929					0.061789208661252815
AETVKNKNKL	10	Unmodified	_AETVKNKNKL_					0	0	0			REV__ENST00000556516.1_1_14:71517389-71527455:+|nuORF	REV__ENST00000556516.1_1_14:71517389-71527455:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.3085327148438	2	572.837862	1143.66117	-1.0791	-0.00061814	-2.364	-0.0013542	-3.4431	-0.0019723	572.8362922073969	64.232	0.85544	64.232	63.854	64.71	0					37	20	3	0	0	0	0.026867	1	5838	5838		28.081	5.5018	1	1422200	+		597	27561	409	410	930	930					0.09508774943151366
AEVAATEIKM	10	Oxidation (M)	_AEVAATEIKM(Oxidation (M))_		AEVAATEIKM(1)		AEVAATEIKM(53)	0	0	1		HNRNPM|p.L411Sfs*117|1|0.08|ENSG00000099783|chr19:8485658-8485658|C/-|frameshift_variant;ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM	HNRNPM|p.L411Sfs*117|1|0.08|ENSG00000099783|chr19:8485658-8485658|C/-|frameshift_variant	HNRNPM|p.L411Sfs*117|1|0.08|ENSG00000099783|chr19:8485658-8485658|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	539.777099609375	2	539.776082	1077.53761	2.93	0.0015815	-2.9948	-0.0016165	-0.064829	-3.4993E-05	539.7742240839073	57.976	1.0782	54.849	54.499	55.577	-3.1264					43	27	3	0	0	0	0.50873	1	1767	1767		53.089	12.311	1	28519			598	1976	410	411	931	931		70			0.0019435578046795854
AEVADAGITL	10	Unmodified	_AEVADAGITL_					0	0	0			REV__nc|ENSG00000185053|Q96LD1|SGCZ	REV__nc|ENSG00000185053|Q96LD1|SGCZ	MULTI-MSMS	OvCa99_classI_Rep5	1	480.2557373046875	2	480.25584	958.497126	-0.023967	-1.151E-05	0.050783	2.4389E-05	0.026816	1.2878E-05	480.2556796391267	61.03	0.89648	61.03	60.646	61.542	0					62	20	4	0	0	0	0.48198	1	5395	5395		56.721	1.9447	1	3214800	+		599	22477	411	412	932	932					0.016217574523693656
AEVCFREF	8	Unmodified	_AEVCFREF_					0	0	0		tr|A0A553SR22|A0A553SR22_NIACIBeta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_00185PE=3SV=1	tr|A0A553SR22|A0A553SR22_NIACIBeta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_00185PE=3SV=1	tr|A0A553SR22|A0A553SR22_NIACIBeta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_00185PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	500.73065185546875	2	500.731477	999.448402	1.0007	0.00050108	-0.67273	-0.00033686	0.32797	0.00016423	500.73105104555606	121.96	1.1003	120.93	120.53	121.64	-1.0286					34	20	2	0	0	0	0.73938	1	9362	9362		31.955	1.4512	1	92255			600	34222	412	413	933	933					-0.051344343883556576
AEVDDVIQV	9	Unmodified	_AEVDDVIQV_					0	0	0		CON__Q28107;ENSG00000198734|ENST00000367797|F5	CON__Q28107;ENSG00000198734|ENST00000367797|F5	CON__Q28107	MULTI-SECPEP	OvCa9_classI_Rep3	3	494.295654296875	2	494.253297	986.492041	-1.1913	-0.00058879	1.1074	0.00054733	-0.083882	-4.1459E-05	494.25384508849896	91.636	0.9884	89.612	89.281	90.27	-2.0241					53	19	4	0	0	0	0.027402	1	5740	5740		47.657	0	1	732770		+	601	638;8861	413	414	934	934					-0.001745464102441474
AEVEAMRPPP	10	Unmodified	_AEVEAMRPPP_					0	0	0			REV__ENSG00000186501|ENST00000374076|TMEM222	REV__ENSG00000186501|ENST00000374076|TMEM222	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.6334838867188	2	548.776416	1095.53828	-0.085914	-4.7147E-05	1.2177	0.00066827	1.1318	0.00062112	548.7763108542158	31.859	0.34759	31.859	31.608	31.956	0					9	6	2	0	0	0	0.026734	1	1354	1354		39.253	5.0803	1	28499	+		602	22594	414	415	935	935					-0.0056680477980535215
AEVEKLKL	8	Unmodified	_AEVEKLKL_					0	0	0			REV__TCHP|p.R361Lfs*41|1|0.04|ENSG00000139437|chr12:109913017-109913018|-/ACTTCCAACAGTACTTTCCGTGGATGCT|frameshift_variant	REV__TCHP|p.R361Lfs*41|1|0.04|ENSG00000139437|chr12:109913017-109913018|-/ACTTCCAACAGTACTTTCCGTGGATGCT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	465.28692626953125	2	465.286943	928.559333	0.40865	0.00019014	-0.89022	-0.00041421	-0.48157	-0.00022407	465.2865075151942	125.02	3.4561	124.79	124.42	127.87	-0.2359					183	69	5	0	0	0	0.47824	1	12207	12207		79.713	5.4575	1	4060300	+		603	19612	415	416	936	936					0.09219528591370363
AEVEKLKL	8	Unmodified	_AEVEKLKL_					0	0	0			REV__TCHP|p.R361Lfs*41|1|0.04|ENSG00000139437|chr12:109913017-109913018|-/ACTTCCAACAGTACTTTCCGTGGATGCT|frameshift_variant	REV__TCHP|p.R361Lfs*41|1|0.04|ENSG00000139437|chr12:109913017-109913018|-/ACTTCCAACAGTACTTTCCGTGGATGCT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	465.2862243652344	2	465.286943	928.559333	1.3406	0.00062376	-2.0993	-0.00097679	-0.75874	-0.00035303	465.28596646402366	125.96	2.9835	124.9	124.53	127.51	-1.0519					156	57	5	0	0	0	0.28381	2	9832	9791;9832		110.12	6.0631	1	4345900	+		604	19612	415	416	937;938	938					0.09219528591370363
AEVEVSIPAKL	11	Unmodified	_AEVEVSIPAKL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OvCa99_classI_Rep5	1	578.336669921875	2	578.334621	1154.65469	-0.36967	-0.00021379	-0.6557	-0.00037922	-1.0254	-0.00059301	578.3339900006157	103.46	0.50787	103.46	103.22	103.73	0					23	11	3	0	0	0	0.068205	1	11569	11569		104.42	22.183	1	828480			605	3119	416	417	939	939					0.08354836991770753
AEVEVSIPAKL	11	Unmodified	_AEVEVSIPAKL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	578.334621	1154.65469	-1.2264	-0.00070928	4.9658	0.0028719	3.7394	0.0021626	578.3399282047842	104.1	0.24713	103.52	103.37	103.62	-0.57639	0.03153	0.004986	NaN	104.42	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5457.6			606	3119	416	417							0.08354836991770753
AEVFPLKVF	9	Unmodified	_AEVFPLKVF_					0	0	0		ENSG00000243749|ENST00000373337|TMEM35B	ENSG00000243749|ENST00000373337|TMEM35B	ENSG00000243749|ENST00000373337|TMEM35B	MULTI-MSMS	OvCa9_classI_Rep2	2	525.3047485351562	2	525.305136	1048.59572	0.77173	0.00040539	-1.5086	-0.00079248	-0.73689	-0.00038709	525.3044048306723	126.65	1.6779	126.41	126.1	127.78	-0.23589					88	33	5	0	0	0	0.094616	5	12372	12355;12366;12372;12384;12390		98.629	27.5	1	536860			607	9384	417	418	940;941;942;943;944	942					0.07336405488081255
AEVFPLKVF	9	Unmodified	_AEVFPLKVF_					0	0	0		ENSG00000243749|ENST00000373337|TMEM35B	ENSG00000243749|ENST00000373337|TMEM35B	ENSG00000243749|ENST00000373337|TMEM35B	MULTI-MSMS	OvCa9_classI_Rep3	3	525.3048095703125	2	525.305136	1048.59572	0.56609	0.00029737	-0.71111	-0.00037355	-0.14502	-7.618E-05	525.3046888649013	127.58	1.6133	126.49	126.1	127.71	-1.0933					76	31	4	0	0	0	0.074342	5	10009	9998;10003;10009;10015;10021		104.75	38.431	1	399690			608	9384	417	418	945;946;947;948;949	947					0.07336405488081255
AEVFPLKVF	9	Unmodified	_AEVFPLKVF_					0	0	0		ENSG00000243749|ENST00000373337|TMEM35B	ENSG00000243749|ENST00000373337|TMEM35B	ENSG00000243749|ENST00000373337|TMEM35B	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.30419921875	2	525.305136	1048.59572	-1.011	-0.00053107	0.44077	0.00023154	-0.5702	-0.00029953	525.3053010165273	127.8	1.8725	126.37	126.09	127.96	-1.4357					104	36	5	0	0	0	0.053172	6	12204	12193;12204;12216;12229;12242;12259		116.9	42.929	1	628780			609	9384	417	418	950;951;952;953;954;955	951					0.07336405488081255
AEVGAAETTL	10	Unmodified	_AEVGAAETTL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa99_classI_Rep5	1	481.2468566894531	2	481.245472	960.476391	1.8063	0.00086927	0.81121	0.00039039	2.6175	0.0012597	481.24565415169496	78.794	0.57854	78.794	78.54	79.119	0					36	13	5	0	0	0	0.11378	1	7997	7997		110.12	27.369	1	2246200			610	2808	418	419	956	956					-0.0054283292729451205
AEVGAAETTL	10	Unmodified	_AEVGAAETTL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.24658203125	2	481.245472	960.476391	-0.83645	-0.00040254	0.61555	0.00029623	-0.22089	-0.0001063	481.2456123359143	81.017	1.6051	78.307	77.954	79.559	-2.7106					90	32	5	0	0	0	0.24425	2	6646	6635;6646		87.696	11.514	1	658610			611	2808	418	419	957;958	958					-0.0054283292729451205
AEVGAAETTL	10	Unmodified	_AEVGAAETTL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MATCH	OvCa9_classI_Rep2	2		2	481.245472	960.476391	0.09962	4.7942E-05	-0.12109	-5.8272E-05	-0.021465	-1.033E-05	481.2452381229554	80.43	1.2944	78.734	78.124	79.418	-1.6951	-0.029958	-0.00019207	NaN	110.12	86	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133070			612	2808	418	419							-0.0054283292729451205
AEVIPTPAE	9	Unmodified	_AEVIPTPAE_					0	0	0			REV__ENST00000295549.8_1_2:177502248-177502497:-|nuORF	REV__ENST00000295549.8_1_2:177502248-177502497:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	463.7337951660156	2	463.745108	925.475663	-0.089117	-4.1327E-05	-0.64899	-0.00030097	-0.73811	-0.00034229	463.74586906247004	56.555	0.20084	56.555	56.422	56.623	0					11	4	4	0	0	0	0.027462	1	4680	4680		29.15	3.6994	1	189440	+		613	24191	419	420	959	959					0.009943724236563867
AEVIYRVQI	9	Unmodified	_AEVIYRVQI_					0	0	0		nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-MSMS	OvCa99_classI_Rep5	1	545.8179931640625	2	545.816399	1089.61824	2.6064	0.0014226	-0.35427	-0.00019336	2.2521	0.0012293	545.8161549560383	86.536	0.90362	86.536	86.231	87.135	0					62	21	5	0	0	0	0.16562	1	9148	9148		82.241	0	1	13666000			614	2100	420	421	960	960					0.07702004885709357
AEVKAYGSL	9	Unmodified	_AEVKAYGSL_					0	0	0			REV__tr|A0A7D6VTN9|A0A7D6VTN9_9CLOTTransmembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21960PE=4SV=1	REV__tr|A0A7D6VTN9|A0A7D6VTN9_9CLOTTransmembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21960PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	469.25384521484375	2	469.2531	936.491647	-0.79526	-0.00037318	0.65772	0.00030864	-0.13754	-6.4541E-05	469.25341955315633	86.432	2.2386	84.255	84.03	86.269	-2.1768					105	43	4	0	0	0	0.11471	2	5166	5166;5179		93.195	5.209	1	2599900	+		615	31618	421	422	961;962	961					0.0208607866057946
AEVKAYGSL	9	Unmodified	_AEVKAYGSL_					0	0	0			REV__tr|A0A7D6VTN9|A0A7D6VTN9_9CLOTTransmembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21960PE=4SV=1	REV__tr|A0A7D6VTN9|A0A7D6VTN9_9CLOTTransmembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21960PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	469.2539978027344	2	469.2531	936.491647	0.31431	0.00014749	-1.0458	-0.00049074	-0.73148	-0.00034325	469.2526284802752	87.047	1.8582	84.42	84.152	86.01	-2.6269					102	36	5	0	0	0	0.14998	1	7432	7432		84.916	2.6105	1	1998000	+		616	31618	421	422	963	963					0.0208607866057946
AEVKEKVVL	9	Unmodified	_AEVKEKVVL_					0	0	0		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	OvCa99_classI_Rep5	1	507.8144836425781	2	507.813325	1013.6121	-0.48912	-0.00024838	0.16414	8.335E-05	-0.32499	-0.00016503	507.81331159431664	53.753	1.0299	53.753	53.475	54.505	0					42	24	2	0	0	0	0.07097	1	4279	4279		106.68	8.0537	1	7079100			617	3330	422	423	964	964					0.10583486654184071
AEVKEKVVL	9	Unmodified	_AEVKEKVVL_					0	0	0		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	OvCa9_classI_Rep2	2	507.8123779296875	2	507.813325	1013.6121	-0.87805	-0.00044589	0.6113	0.00031043	-0.26675	-0.00013546	507.81340944911346	57.442	2.3909	54.65	53.436	55.826	-2.792					122	47	4	0	0	0	0.066102	9	4090	4081;4086;4090;4095;4101;4107;4114;4121;4128		109.48	27.238	1	666880			618	3330	422	423	965;966;967;968;969;970;971;972;973	967					0.10583486654184071
AEVKEKVVL	9	Unmodified	_AEVKEKVVL_					0	0	0		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.8143615722656	2	507.813325	1013.6121	-0.39175	-0.00019894	-0.50693	-0.00025743	-0.89869	-0.00045636	507.8129117453663	58.068	1.9646	54.723	54.035	56	-3.3449					110	38	4	0	0	0	0.033166	3	3805	3805;3817;3829		132.76	22.638	1	2106200			619	3330	422	423	974;975;976	974					0.10583486654184071
AEVKELIK	8	Unmodified	_AEVKELIK_					0	0	0			REV__ENST00000563629.1_1_16:50783909-50820919:+|nuORF	REV__ENST00000563629.1_1_16:50783909-50820919:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	465.2872009277344	2	465.286943	928.559333	0.40865	0.00019014	-0.89022	-0.00041421	-0.48157	-0.00022407	465.2865075151942	125.02	3.4561	124.79	124.42	127.87	-0.2359					183	69	5	0	0	0	0.21559	1	12154	12154		122.18	17.429	1	4060300	+		620	17109	423	424	977	977					0.09219528591381732
AEVKELIK	8	Unmodified	_AEVKELIK_					0	0	0			REV__ENST00000563629.1_1_16:50783909-50820919:+|nuORF	REV__ENST00000563629.1_1_16:50783909-50820919:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	465.28631591796875	2	465.286943	928.559333	1.3406	0.00062376	-2.0993	-0.00097679	-0.75874	-0.00035303	465.28596646402366	125.96	2.9835	124.9	124.53	127.51	-1.0519					156	57	5	0	0	0	0.2357	1	9820	9820		118.74	3.249	1	4345900	+		621	17109	423	424	978	978					0.09219528591381732
AEVKELIK	8	Unmodified	_AEVKELIK_					0	0	0			REV__ENST00000563629.1_1_16:50783909-50820919:+|nuORF	REV__ENST00000563629.1_1_16:50783909-50820919:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.2855529785156	2	465.286943	928.559333	-2.3863	-0.0011103	1.7939	0.00083465	-0.59247	-0.00027567	465.2877596727037	126.27	3.4031	124.85	124.48	127.88	-1.4143					181	67	5	0	0	0	0.36013	1	12040	12040		95.815	2.6719	1	4410500	+		622	17109	423	424	979	979					0.09219528591381732
AEVKERVTL	9	Unmodified	_AEVKERVTL_					0	0	0		ENSG00000145191|ENST00000648915|EIF2B5;ENST00000491144.5_1_3:183857994-183862728:+|nuORF;ENST00000492773.5_1_3:183859720-183860594:+|nuORF	ENSG00000145191|ENST00000648915|EIF2B5	ENSG00000145191|ENST00000648915|EIF2B5	MULTI-MSMS	OvCa99_classI_Rep5	1	522.8076171875	2	522.806031	1043.59751	-0.99387	-0.0005196	0.78632	0.00041109	-0.20755	-0.00010851	522.806266773274	51.792	0.66934	51.792	51.544	52.214	0					38	15	4	0	0	0	0.14445	1	4013	4013		85.862	19.433	1	3873100			623	5206	424	425	980	980					0.07745414506052839
AEVLEAHTI	9	Unmodified	_AEVLEAHTI_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;ZNFX1|p.V1053Afs*12|1|0.06|ENSG00000124201|chr20:49252778-49252779|-/TCTCGGCTCACTGCAACCACCG|frameshift_variant	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	OvCa99_classI_Rep5	1	491.7653503417969	2	491.763832	981.513111	0.31431	0.00015457	0.53173	0.00026149	0.84604	0.00041605	491.76384269901234	72.433	0.87001	72.433	72.165	73.035	0					54	21	5	0	0	0	0.041116	1	7040	7040		125.81	40.455	1	3215400			624	3631	425	426	981	981					0.02161463689287757
AEVLEAHTI	9	Unmodified	_AEVLEAHTI_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;ZNFX1|p.V1053Afs*12|1|0.06|ENSG00000124201|chr20:49252778-49252779|-/TCTCGGCTCACTGCAACCACCG|frameshift_variant	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	491.763832	981.513111	0.093114	4.579E-05	1.0107	0.000497	1.1038	0.00054279	491.76428014627015	74.488	1.4091	72.516	71.693	73.102	-1.9711	0.15543	0.0010342	NaN	125.81	45	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65174			625	3631	425	426							0.02161463689287757
AEVLEAHTI	9	Unmodified	_AEVLEAHTI_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;ZNFX1|p.V1053Afs*12|1|0.06|ENSG00000124201|chr20:49252778-49252779|-/TCTCGGCTCACTGCAACCACCG|frameshift_variant	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	491.763832	981.513111	0.41375	0.00020347	-0.84228	-0.0004142	-0.42853	-0.00021074	491.76321459834037	75.364	0.9213	72.133	71.867	72.788	-3.2308	-0.22791	-0.00078823	NaN	125.81	33	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260970			626	3631	425	426							0.02161463689287757
AEVLLLHAIQ	10	Unmodified	_AEVLLLHAIQ_					0	0	0		tr|A0A553SSA4|A0A553SSA4_NIACIMurR/RpiRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02705PE=4SV=1	tr|A0A553SSA4|A0A553SSA4_NIACIMurR/RpiRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02705PE=4SV=1	tr|A0A553SSA4|A0A553SSA4_NIACIMurR/RpiRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02705PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	553.8084716796875	2	553.832049	1105.64954	0.90108	0.00049904	-0.1616	-8.9498E-05	0.73948	0.00040955	553.8321306605746	97.088	0.43951	96.129	95.728	96.167	-0.95857					10	8	2	0	0	0	0.026802	1	8765	8765		34.173	13.226	1	43547			627	34350	426	427	982	982					0.10094577919790026
AEVLLPRL	8	Unmodified	_AEVLLPRL_					0	0	0		nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN;chr16:765223-765691|423|52.11|0.59|6.46|+|ENST00000563651|MSLN,MSLN	nc|ENSG00000102854|Q13421-4|MSLN	nc|ENSG00000102854|Q13421-4|MSLN	MSMS	OvCa9_classI_Rep2	2	455.7900390625	2	455.789653	909.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.5	1	106.19	105.69	106.69	-0.30836								0	0	0	0.30129	1	9919	9919		60.972	7.6205	1				628	2258	427	428	983	983					0.1063525217384722
AEVLLPRL	8	Unmodified	_AEVLLPRL_					0	0	0		nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN;chr16:765223-765691|423|52.11|0.59|6.46|+|ENST00000563651|MSLN,MSLN	nc|ENSG00000102854|Q13421-4|MSLN	nc|ENSG00000102854|Q13421-4|MSLN	MSMS	OvCa9_classI_Rep2	2	455.7898864746094	2	455.789653	909.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.6	1	106.29	105.79	106.79	-0.30836								0	0	0	0.30129	1	9931	9931		71.296	15.791	1				629	2258	427	428	984	984					0.1063525217384722
AEVLLPRL	8	Unmodified	_AEVLLPRL_					0	0	0		nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN;chr16:765223-765691|423|52.11|0.59|6.46|+|ENST00000563651|MSLN,MSLN	nc|ENSG00000102854|Q13421-4|MSLN	nc|ENSG00000102854|Q13421-4|MSLN	MSMS	OvCa9_classI_Rep2	2	455.7893981933594	2	455.789653	909.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.65	1	106.34	105.84	106.84	-0.30836								0	0	0	0.30129	1	9937	9937		60.972	5.4677	1				630	2258	427	428	985	985					0.1063525217384722
AEVLLPRL	8	Unmodified	_AEVLLPRL_					0	0	0		nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN;chr16:765223-765691|423|52.11|0.59|6.46|+|ENST00000563651|MSLN,MSLN	nc|ENSG00000102854|Q13421-4|MSLN	nc|ENSG00000102854|Q13421-4|MSLN	MSMS	OvCa9_classI_Rep3	3	455.789794921875	2	455.789653	909.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.37	1	106.1	105.6	106.6	-1.267								0	0	0	0.30129	1	7620	7620		60.972	5.4677	1				631	2258	427	428	986	986					0.1063525217384722
AEVLLPRL	8	Unmodified	_AEVLLPRL_					0	0	0		nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN;chr16:765223-765691|423|52.11|0.59|6.46|+|ENST00000563651|MSLN,MSLN	nc|ENSG00000102854|Q13421-4|MSLN	nc|ENSG00000102854|Q13421-4|MSLN	MSMS	OvCa9_classI_Rep3	3	455.78900146484375	2	455.789653	909.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.54	1	106.27	105.77	106.77	-1.267								0	0	0	0.30129	1	7640	7640		68.787	5.4806	1				632	2258	427	428	987	987					0.1063525217384722
AEVLLPRL	8	Unmodified	_AEVLLPRL_					0	0	0		nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN;chr16:765223-765691|423|52.11|0.59|6.46|+|ENST00000563651|MSLN,MSLN	nc|ENSG00000102854|Q13421-4|MSLN	nc|ENSG00000102854|Q13421-4|MSLN	MULTI-MSMS	OvCa9_classI_Rep4_	4	455.79010009765625	2	455.789653	909.564752	-1.8664	-0.00085071	1.3033	0.00059404	-0.56312	-0.00025666	455.79018128378505	107.87	1.3328	106	105.69	107.02	-1.8785					43	26	2	0	0	0	0.45246	1	9869	9869		82.305	0	1	218710			633	2258	427	428	988	988					0.1063525217384722
AEVLLPRLV	9	Unmodified	_AEVLLPRLV_					0	0	0		nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN	nc|ENSG00000102854|Q13421-4|MSLN	nc|ENSG00000102854|Q13421-4|MSLN	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.32305908203125	2	505.32386	1008.63317	-0.70978	-0.00035867	0.41914	0.0002118	-0.29064	-0.00014687	505.32402800214817	116.99	1.1525	115.63	115.3	116.45	-1.3645					42	21	3	0	0	0	0.37135	1	10937	10937		54.776	12.38	1	93308			634	2258	428	429	989	989					0.12919496753704607
AEVLLPRLV	9	Unmodified	_AEVLLPRLV_					0	0	0		nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN	nc|ENSG00000102854|Q13421-4|MSLN	nc|ENSG00000102854|Q13421-4|MSLN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	505.32386	1008.63317	-1.121	-0.00056647	1.0859	0.00054875	-0.035076	-1.7725E-05	505.3242246238777	115.88	0.99033	115.76	115.44	116.43	-0.11777	0.065882	0.0002937	NaN	54.776	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83788			635	2258	428	429							0.12919496753704607
AEVLLPRLV	9	Unmodified	_AEVLLPRLV_					0	0	0		nc|ENSG00000102854|Q13421-4|MSLN;ENSG00000102854|ENST00000545450|MSLN;nc|ENSG00000102854|Q13421|MSLN;nc|ENSG00000102854|Q13421-2|MSLN	nc|ENSG00000102854|Q13421-4|MSLN	nc|ENSG00000102854|Q13421-4|MSLN	MULTI-MATCH	OvCa9_classI_Rep3	3		2	505.32386	1008.63317	-1.2359	-0.00062452	1.0102	0.0005105	-0.22563	-0.00011401	505.3242245897572	116.74	1.1393	115.7	115.39	116.53	-1.0414	0.0035087	0.00021721	NaN	54.776	44	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85863			636	2258	428	429							0.12919496753704607
AEVLNKHSL	9	Unmodified	_AEVLNKHSL_					0	0	0		HNRNPM|p.L411Sfs*117|1|0.08|ENSG00000099783|chr19:8485658-8485658|C/-|frameshift_variant;ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM;ENST00000597813.5_1_19:8528492-8528615:+|nuORF	HNRNPM|p.L411Sfs*117|1|0.08|ENSG00000099783|chr19:8485658-8485658|C/-|frameshift_variant	HNRNPM|p.L411Sfs*117|1|0.08|ENSG00000099783|chr19:8485658-8485658|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	505.78570556640625	2	505.785099	1009.55564	0.071283	3.6054E-05	-0.37377	-0.00018905	-0.30248	-0.00015299	505.7848015700325	46.565	0.82528	46.565	46.069	46.894	0					34	18	3	0	0	0	0.030815	1	3294	3294		134.81	25.107	1	3571300			637	1976	429	430	990	990					0.051248588175326404
AEVLVRAKP	9	Unmodified	_AEVLVRAKP_					0	0	0		ENSG00000173431|ENST00000308227|RNASE8	ENSG00000173431|ENST00000308227|RNASE8	ENSG00000173431|ENST00000308227|RNASE8	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.27288818359375	2	491.805834	981.597115	-0.85555	-0.00042076	1.3937	0.00068542	0.53813	0.00026466	491.8061225258625	38.398	0.64245	35.688	35.469	36.112	-2.7097					31	12	3	0	0	0	0.027462	1	1791	1791		19.997	0	1	47076			638	7375	430	431	991	991					0.10558039576835654
AEVNADEVI	9	Unmodified	_AEVNADEVI_					0	0	0		ENSG00000159495|ENST00000452443|TGM7	ENSG00000159495|ENST00000452443|TGM7	ENSG00000159495|ENST00000452443|TGM7	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.2386474609375	2	480.237647	958.460741	-0.10482	-5.0339E-05	-0.13757	-6.6066E-05	-0.24239	-0.00011641	480.23757692570734	56.239	2.0804	52.945	52.567	54.647	-3.2944					82	40	4	0	0	0	0.26076	1	3591	3591		67.494	1.0644	1	1045200			639	6016	431	432	992	992					-0.020151194443315035
AEVNGQTITL	10	Unmodified	_AEVNGQTITL_					0	0	0			REV__ENSG00000168427|ENST00000409223|KLHL30	REV__ENSG00000168427|ENST00000409223|KLHL30	MULTI-MSMS	OvCa9_classI_Rep2	2	523.279052734375	2	523.279846	1044.54514	-0.34081	-0.00017834	-0.68044	-0.00035606	-1.0212	-0.0005344	523.2796362857813	75.589	2.6974	73.735	72.913	75.61	-1.854					146	51	4	0	0	0	0.13777	1	6270	6270		104.06	8.0232	1	3667000	+		640	21374	432	433	993	993					0.02464831372435583
AEVPESVFLHL	11	Unmodified	_AEVPESVFLHL_					0	0	0		chr14:103121499-103123437|388|11.02|0.0|20.07|+|ENST00000333007|TNFAIP2,TNFAIP2;ENSG00000185215|ENST00000560869|TNFAIP2	chr14:103121499-103123437|388|11.02|0.0|20.07|+|ENST00000333007|TNFAIP2,TNFAIP2	chr14:103121499-103123437|388|11.02|0.0|20.07|+|ENST00000333007|TNFAIP2,TNFAIP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	620.8330078125	2	620.832246	1239.64994	-2.1733	-0.0013492	1.5136	0.0009397	-0.65965	-0.00040953	620.8333350438218	126.55	0.98457	125.14	124.83	125.81	-1.4143					38	19	3	0	0	0	0.62561	1	12049	12049		25.574	0	1	45405			641	339	433	434	994	994					0.039699528490018565
AEVPGSPAVV	10	Unmodified	_AEVPGSPAVV_					0	0	0		nc|ENSG00000148204|Q5IJ48-3|CRB2;chr9:123368946-123370108|392|18.4|0.6|4.94|+|ENST00000460253|CRB2,CRB2;nc|ENSG00000148204|Q5IJ48-2|CRB2;ENSG00000148204|ENST00000373631|CRB2	nc|ENSG00000148204|Q5IJ48-3|CRB2	nc|ENSG00000148204|Q5IJ48-3|CRB2	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.2536926269531	2	463.2531	924.491647	-0.12571	-5.8237E-05	-0.014777	-6.8456E-06	-0.14049	-6.5083E-05	463.25297521688265	59.711	1.43	56.319	55.953	57.383	-3.392					75	28	4	0	0	0	0.55359	1	3992	3992		47.657	1.6851	1	780060			642	551	434	435	995	995					0.02638078660561405
AEVPKLTLLNL	11	Unmodified	_AEVPKLTLLNL_					0	0	0			REV__MPI|p.G265V|1|0.18|ENSG00000178802|chr15:74896275-74896275|G/T|missense_variant	REV__MPI|p.G265V|1|0.18|ENSG00000178802|chr15:74896275-74896275|G/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	605.8729248046875	2	605.873914	1209.73327	0.57838	0.00035042	-3.6882	-0.0022346	-3.1098	-0.0018842	605.8715656439838	162.48	0.50348	162.48	162.13	162.63	0					35	11	5	0	0	0	0.68399	1	19029	19029		35.152	7.0705	1	1755200	+		643	28677	435	436	996	996					0.13679689296850484
AEVTPVGKEI	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AEVTPVGKEI_					1	0	0			REV__ENST00000262995.8_1_4:144391813-144391873:+|nuORF	REV__ENST00000262995.8_1_4:144391813-144391873:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	542.7921752929688	2	542.797872	1083.58119	0.86019	0.00046691	0.29504	0.00016015	1.1552	0.00062706	542.7978567793076	153.16	2.0687	153.16	152.45	154.52	0					102	45	3	0	0	0	0.5675	1	18047	18047		45.972	10.354	1	105310	+		644	23989	436	437	997	997					0.04274288549299854
AEWGSRRRR	9	Unmodified	_AEWGSRRRR_					0	0	0			REV__ENST00000258648.6_1_13:48664543-48669210:-|nuORF	REV__ENST00000258648.6_1_13:48664543-48669210:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	587.3211059570312	2	587.321037	1172.62752	-0.8251	-0.0004846	-0.5195	-0.00030511	-1.3446	-0.00078971	587.3206832092721	25.918	0.64927	25.918	25.693	26.342	0					28	12	4	0	0	0	0.28934	1	619	619		64.207	14.671	1	529520	+		645	23912	437	438	998	998					0.04811211014612127
AEWGSRRRR	9	Unmodified	_AEWGSRRRR_					0	0	0			REV__ENST00000258648.6_1_13:48664543-48669210:-|nuORF	REV__ENST00000258648.6_1_13:48664543-48669210:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	587.321037	1172.62752	-0.8251	-0.0004846	-0.5195	-0.00030511	-1.3446	-0.00078971	587.3206832092721	25.918	0.64927	25.918	25.693	26.342	0	0	0	NaN	64.207	28	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	529520	+		646	23912	437	438							0.04811211014612127
AEWIPEERYG	10	Unmodified	_AEWIPEERYG_					0	0	0		ENST00000369903.6_1_1:109825347-109825730:-|nuORF;ENST00000418914.2_2_1:109825350-109825479:-|nuORF	ENST00000369903.6_1_1:109825347-109825730:-|nuORF	ENST00000369903.6_1_1:109825347-109825730:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	625.2933959960938	2	625.296027	1248.5775	-4.4959	-0.0028113	1.016	0.00063531	-3.4799	-0.002176	625.2965199042848	153.36	0.97864	152.39	152.03	153.01	-0.97301					42	20	3	0	0	0	0.75568	1	13125	13125		19.104	9.3979	1	67090			647	10910	438	439	999	999					-0.03684381224570643
AEYESMFFLL	10	Unmodified	_AEYESMFFLL_					0	0	0			REV__nc|ENSG00000164944|Q69YN4-4|VIRMA	REV__nc|ENSG00000164944|Q69YN4-4|VIRMA	MULTI-MSMS	OvCa9_classI_Rep2	2	625.2927856445312	2	625.294107	1248.57366	-4.4158	-0.0027612	4.0062	0.0025051	-0.40953	-0.00025608	625.2964528602282	153.01	0.78319	152.79	152.53	153.32	-0.22697					43	18	3	0	0	0	0.63752	1	15559	15559		25.574	4.6271	1	37795	+		648	21041	439	440	1000	1000					-0.04068187042639693
AEYGEIKNIHL	11	Unmodified	_AEYGEIKNIHL_					0	0	0		nc|ENSG00000265241|Q9Y5S9-2|RBM8A;ENSG00000265241|ENST00000583313|RBM8A	nc|ENSG00000265241|Q9Y5S9-2|RBM8A	nc|ENSG00000265241|Q9Y5S9-2|RBM8A	MULTI-MSMS	OvCa99_classI_Rep5	1	643.8431396484375	2	643.840602	1285.66665	2.6875	0.0017303	-0.54138	-0.00034856	2.1461	0.0013817	643.8399492123498	84.594	0.74291	84.594	84.303	85.046	0					48	17	4	0	0	0	0.1354	1	8840	8840		81.525	0	1	2158700			649	9522	440	441	1001	1001					0.035244537349626626
AEYGLHLY	8	Unmodified	_AEYGLHLY_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.D3716Mfs*6|1|0.06|ENSG00000157423|chr16:70868734-70868734|C/-|frameshift_variant;ENST00000309900.11_1_16:70928350-70955090:-|nuORF	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	482.7450866699219	2	483.239993	964.465432	-1.1072	-0.00053505	-3.4008	-0.0016434	-4.5081	-0.0021785	483.2382032446611	50.868	1.4717	47.695	47.153	48.624	-3.1734					82	28	4	0	0	0	0.028476	1	2987	2987		44.531	19.081	1	362680			650	5891	441	442	1002	1002					-0.018221905109157888
AEYGLHLY	8	Unmodified	_AEYGLHLY_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.D3716Mfs*6|1|0.06|ENSG00000157423|chr16:70868734-70868734|C/-|frameshift_variant;ENST00000309900.11_1_16:70928350-70955090:-|nuORF	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	483.239993	964.465432	-1.3286	-0.00064204	-3.3116	-0.0016003	-4.6402	-0.0022424	483.23829659606645	50.674	1.0908	47.88	47.43	48.521	-2.794	0.092493	4.7242E-05	NaN	44.531	46	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64400			651	5891	441	442							-0.018221905109157888
AEYLPKAF	8	Unmodified	_AEYLPKAF_					0	0	0			REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	OvCa9_classI_Rep2	2	469.74957275390625	2	469.752736	937.490919	-1.259	-0.00059142	-2.9262	-0.0013746	-4.1852	-0.001966	469.7511923496125	68.222	1.783	65.601	64.982	66.765	-2.6203					91	35	3	0	0	0	0.6962	1	5388	5388		44.117	5.3107	1	721920	+		652	17113	442	443	1003	1003					0.019672840115163126
AEYNFYTL	8	Unmodified	_AEYNFYTL_					0	0	0			REV__nc|ENSG00000253291|A0A0K0K1E9|TRBV7-7	REV__nc|ENSG00000253291|A0A0K0K1E9|TRBV7-7	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.8061218261719	2	510.737283	1019.46001	-0.64125	-0.00032751	1.2578	0.00064238	0.61651	0.00031487	510.73857581428484	98.925	0.19945	98.032	97.957	98.156	-0.89305					6	3	2	0	0	0	0.028476	1	9015	9015		47.916	3.3845	1	12461	+		653	29113	443	444	1004	1004					-0.04893914093383955
AEYQDLTFL	9	Unmodified	_AEYQDLTFL_					0	0	0		nc|ENSG00000185043|Q99828-2|CIB1;ENSG00000185043|ENST00000328649|CIB1	nc|ENSG00000185043|Q99828-2|CIB1	nc|ENSG00000185043|Q99828-2|CIB1	MULTI-MSMS	OvCa99_classI_Rep5	1	550.2710571289062	2	550.268947	1098.52334	1.5992	0.00087999	1.1857	0.00065248	2.7849	0.0015325	550.2693378474615	135.94	0.79874	135.94	135.69	136.49	0					40	16	4	0	0	0	0.26076	1	15830	15830		67.494	1.0644	1	700690			654	8218	444	445	1005	1005					-0.0219797337615546
AEYQDLTFL	9	Unmodified	_AEYQDLTFL_					0	0	0		nc|ENSG00000185043|Q99828-2|CIB1;ENSG00000185043|ENST00000328649|CIB1	nc|ENSG00000185043|Q99828-2|CIB1	nc|ENSG00000185043|Q99828-2|CIB1	MULTI-MSMS	OvCa9_classI_Rep3	3	550.26806640625	2	550.268947	1098.52334	-1.2272	-0.00067531	1.3953	0.0007678	0.16808	9.2492E-05	550.2695144418313	135.02	0.6897	133.9	133.7	134.39	-1.1226					27	13	3	0	0	0	0.28934	1	10914	10914		64.207	3.2353	1	47141			655	8218	444	445	1006	1006					-0.0219797337615546
AEYSTKNNAL	10	Unmodified	_AEYSTKNNAL_					0	0	0		ENST00000513139.1_1_4:177241188-177248429:+|nuORF;ENSG00000129128|ENST00000503362|SPCS3;ENST00000507678.5_1_4:177243228-177249478:+|nuORF	ENST00000513139.1_1_4:177241188-177248429:+|nuORF	ENST00000513139.1_1_4:177241188-177248429:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.7747192382812	2	555.774928	1109.5353	0.23824	0.00013241	-0.4538	-0.00025221	-0.21556	-0.0001198	555.77460180428	51.82	1.665	48.647	47.922	49.587	-3.1734					78	32	4	0	0	0	0.10472	2	3063	3063;3075		112.41	31.819	1	947320			656	3920	445	446	1007;1008	1007					-0.015083566329394671
AEYSTKNNAL	10	Unmodified	_AEYSTKNNAL_					0	0	0		ENST00000513139.1_1_4:177241188-177248429:+|nuORF;ENSG00000129128|ENST00000503362|SPCS3;ENST00000507678.5_1_4:177243228-177249478:+|nuORF	ENST00000513139.1_1_4:177241188-177248429:+|nuORF	ENST00000513139.1_1_4:177241188-177248429:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	555.774928	1109.5353	-0.59473	-0.00033054	0.31362	0.0001743	-0.28111	-0.00015623	555.7749293521218	51.589	1.0897	48.776	48.552	49.642	-2.8129	0.064727	0.00050628	NaN	112.41	45	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147220			657	3920	445	446							-0.015083566329394671
AEYTAKIAL	9	Unmodified	_AEYTAKIAL_					0	0	0		ENSG00000092820|ENST00000367075|EZR;EZR-PARP3|1|fusion	ENSG00000092820|ENST00000367075|EZR;EZR-PARP3|1|fusion	EZR-PARP3|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	490.2772216796875	2	490.276575	978.538597	2.2361	0.0010963	0.19778	9.6968E-05	2.4339	0.0011933	490.27638290682626	84.37	0.62463	84.37	83.965	84.589	0					32	14	3	0	0	0	0.10502	1	8802	8802		95.815	5.0385	1	1833700			658	14317;1900	446	447	1009	1009					0.04846938211710494
AEYTAKIAL	9	Unmodified	_AEYTAKIAL_					0	0	0		ENSG00000092820|ENST00000367075|EZR;EZR-PARP3|1|fusion	ENSG00000092820|ENST00000367075|EZR;EZR-PARP3|1|fusion	EZR-PARP3|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	490.2760314941406	2	490.276575	978.538597	-1.0763	-0.00052766	-0.0088866	-4.3569E-06	-1.0851	-0.00053202	490.2765699201797	85.222	2.5783	83.732	82.853	85.431	-1.4906					124	50	3	0	0	0	0.0070314	13	7377	7354;7359;7365;7371;7377;7383;7389;7396;7402;7408;7415;7422;7429		185.55	89.359	1	2076600			659	14317;1900	446	447	1010;1011;1012;1013;1014;1015;1016;1017;1018;1019;1020;1021;1022	1014					0.04846938211710494
AEYTAKIAL	9	Unmodified	_AEYTAKIAL_					0	0	0		ENSG00000092820|ENST00000367075|EZR;EZR-PARP3|1|fusion	ENSG00000092820|ENST00000367075|EZR;EZR-PARP3|1|fusion	EZR-PARP3|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	490.2769470214844	2	490.276575	978.538597	-1.4381	-0.00070509	0.66877	0.00032788	-0.76938	-0.00037721	490.2769512245952	85.947	2.8735	83.726	82.84	85.714	-2.2204					135	56	3	0	0	0	0.0070314	11	5074	5069;5074;5080;5086;5092;5099;5105;5111;5119;5125;5132		185.55	89.359	1	4145000			660	14317;1900	446	447	1023;1024;1025;1026;1027;1028;1029;1030;1031;1032;1033	1024					0.04846938211710494
AEYTAKIAL	9	Unmodified	_AEYTAKIAL_					0	0	0		ENSG00000092820|ENST00000367075|EZR;EZR-PARP3|1|fusion	ENSG00000092820|ENST00000367075|EZR;EZR-PARP3|1|fusion	EZR-PARP3|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.2771911621094	2	490.276575	978.538597	1.3458	0.00065983	-3.4878	-0.00171	-2.142	-0.0010501	490.27490697874697	86.414	2.5432	83.787	83.061	85.605	-2.6269					117	50	3	0	0	0	0.0094273	6	7308	7296;7308;7320;7333;7345;7371		171.53	75.341	1	4106400			661	14317;1900	446	447	1034;1035;1036;1037;1038;1039	1035					0.04846938211710494
AFAGNPYFIGL	11	Unmodified	_AFAGNPYFIGL_					0	0	0		tr|A0A7D6ZHP2|A0A7D6ZHP2_9CLOT4-alpha-glucanotransferaseOS=ClostridiumintestinaleOX=36845GN=malQPE=3SV=1	tr|A0A7D6ZHP2|A0A7D6ZHP2_9CLOT4-alpha-glucanotransferaseOS=ClostridiumintestinaleOX=36845GN=malQPE=3SV=1	tr|A0A7D6ZHP2|A0A7D6ZHP2_9CLOT4-alpha-glucanotransferaseOS=ClostridiumintestinaleOX=36845GN=malQPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	585.2970581054688	2	585.303124	1168.5917	-6.3089	-0.0036926	-3.3059	-0.0019349	-9.6148	-0.0056276	585.3009430852495	158.32	1.01	156.73	156.43	157.44	-1.5858					64	32	3	0	0	0	0.72459	1	15639	15639		20.947	1.8434	1	27296			662	35584	447	448	1040	1040					0.014143159943841965
AFAILVLAKF	10	Unmodified	_AFAILVLAKF_					0	0	0			REV__nc|ENSG00000163631|P02768-3|ALB	REV__nc|ENSG00000163631|P02768-3|ALB	MULTI-MSMS	OvCa9_classI_Rep2	2	546.840087890625	2	546.844428	1091.6743	-4.8246	-0.0026383	-2.6452	-0.0014465	-7.4698	-0.0040848	546.8429110027589	158.57	1.287	158.34	158.06	159.35	-0.22697					77	26	5	0	0	0	0.79715	1	16087	16087		19.36	3.7182	1	487190	+	+	663	16184	448	449	1041	1041					0.13213257793154298
AFANLRKVL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AFANLRKVL_					1	0	0		ENST00000496756.1_1_1:120254528-120263945:+|nuORF;PHGDH|p.V356Gfs*2|1|0.07|ENSG00000092621|chr1:119740507-119740507|T/-|frameshift_variant;ENSG00000092621|ENST00000641023|PHGDH	ENST00000496756.1_1_1:120254528-120263945:+|nuORF	ENST00000496756.1_1_1:120254528-120263945:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	537.3291625976562	2	537.326934	1072.63931	1.8732	0.0010065	0.39434	0.00021189	2.2675	0.0012184	537.3270560084636	118.42	0.84709	118.42	118.11	118.96	0					53	17	4	0	0	0	0.064607	2	13590	13568;13590		110.34	50.043	1	1163400			664	1899	449	450	1042;1043	1043					0.10590014985245944
AFAVAFTVTI	10	Unmodified	_AFAVAFTVTI_					0	0	0		tr|A0A553SJ78|A0A553SJ78_NIACIprotein-N(pi)-phosphohistidine--sucrosephosphotransferaseOS=NialliacirculansOX=1397GN=CEQ21_16205PE=4SV=1	tr|A0A553SJ78|A0A553SJ78_NIACIprotein-N(pi)-phosphohistidine--sucrosephosphotransferaseOS=NialliacirculansOX=1397GN=CEQ21_16205PE=4SV=1	tr|A0A553SJ78|A0A553SJ78_NIACIprotein-N(pi)-phosphohistidine--sucrosephosphotransferaseOS=NialliacirculansOX=1397GN=CEQ21_16205PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.7584838867188	2	520.294768	1038.57498	1.9161	0.00099695	2.8108	0.0014625	4.727	0.0024594	520.2957508539484	121	0.33795	121	120.87	121.21	0					9	7	2	0	0	0	0.026669	1	13916	13916		38.806	0	1	31723			665	33473	450	451	1044	1044					0.057238151084447964
AFCGTFSIYN	10	Unmodified	_AFCGTFSIYN_					0	0	0			REV__ENSG00000181767|ENST00000313503|OR8H2	REV__ENSG00000181767|ENST00000313503|OR8H2	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.751953125	2	561.749867	1121.48518	1.5754	0.000885	-0.06281	-3.5283E-05	1.5126	0.00084972	561.7497335181421	122.59	1.041	121.23	120.96	122	-1.3666					44	20	3	0	0	0	0.6104	1	11620	11620		40.778	4.3314	1	82022	+		666	22248	451	452	1045	1045					-0.07070182562461014
AFDLKCDSVCV	11	Unmodified	_AFDLKCDSVCV_					0	0	0		ENST00000589706.1_1_18:48573554-48575699:+|nuORF;ENST00000590722.2_1_18:48573416-48579019:+|nuORF;SMAD4|p.D415Efs*20|1|0.08|ENSG00000141646|chr18:51067121-51067124|AGAC/-|frameshift_variant;ENSG00000141646|ENST00000342988|SMAD4	ENST00000589706.1_1_18:48573554-48575699:+|nuORF	ENST00000589706.1_1_18:48573554-48575699:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	600.2701416015625	2	600.275392	1198.53623	-5.4284	-0.0032585	-0.13736	-8.2452E-05	-5.5658	-0.003341	600.275203760979	160.29	1.5488	160.06	159.78	161.33	-0.22697					74	31	3	0	0	0	0.72479	1	16409	16409		18.262	0.79408	1	65724			667	4932	452	453	1046	1046					-0.0550960157991085
AFDTNYSTEP	10	Unmodified	_AFDTNYSTEP_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6;ENST00000420752.1_1_10:50979994-50980189:+|nuORF	ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.3248291015625	2	572.743293	1143.47203	2.219	0.0012709	-2.6764	-0.0015329	-0.45739	-0.00026197	572.741682436805	91.761	0.4257	91.761	91.582	92.008	0					16	9	2	0	0	0	0.026931	1	9901	9901		30.318	5.7985	1	843060			668	1411	453	454	1047	1047					-0.09396342140848901
AFEVYKSN	8	Unmodified	_AFEVYKSN_					0	0	0		nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;IBTK|p.P1251Qfs*12|1|0.05|ENSG00000005700|chr6:82173412-82173412|G/-|frameshift_variant;ENSG00000005700|ENST00000306270|IBTK	nc|ENSG00000005700|Q9P2D0-2|IBTK	nc|ENSG00000005700|Q9P2D0-2|IBTK	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.75286865234375	2	479.23745	956.460347	-0.47509	-0.00022768	-0.66831	-0.00032028	-1.1434	-0.00054796	479.23726849150205	51.258	1.3078	48.085	47.62	48.927	-3.1734					26	25	2	0	0	0	0.028476	1	3027	3027		53.351	3.9099	1	22899			669	857	454	455	1048	1048					-0.019624943735266243
AFFELAKKV	9	Unmodified	_AFFELAKKV_					0	0	0		nc|ENSG00000168026|Q8NDW8-6|TTC21A;nc|ENSG00000168026|Q8NDW8-5|TTC21A;ENSG00000168026|ENST00000683103|TTC21A;nc|ENSG00000168026|Q8NDW8|TTC21A;nc|ENSG00000168026|Q8NDW8-7|TTC21A;nc|ENSG00000168026|Q8NDW8-3|TTC21A	nc|ENSG00000168026|Q8NDW8-6|TTC21A	nc|ENSG00000168026|Q8NDW8-6|TTC21A	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.3063354492188	2	526.810585	1051.60662	2.3017	0.0012126	3.7336	0.0019669	6.0353	0.0031795	526.8126714801541	75.707	1.1509	75.707	75.292	76.443	0					41	28	2	0	0	0	0.027456	1	7493	7493		30.504	0	1	250720			670	6865	455	456	1049	1049					0.08287807862370755
AFFWLTYA	8	Unmodified	_AFFWLTYA_					0	0	0			REV__ENSG00000167619|ENST00000301204|TMEM145	REV__ENSG00000167619|ENST00000301204|TMEM145	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.7583923339844	2	509.755278	1017.496	0.78612	0.00040073	0.68448	0.00034892	1.4706	0.00074965	509.75545378271215	140.24	0.90536	138.75	138.46	139.37	-1.4952					35	17	3	0	0	0	0.72134	1	13689	13689		39.021	0.21535	1	66635	+		671	21290	456	457	1050	1050					-0.01204412125878207
AFGGAIHAAF	10	Unmodified	_AFGGAIHAAF_					0	0	0			REV__ENSG00000158315|ENST00000372990|RHBDL2	REV__ENSG00000158315|ENST00000372990|RHBDL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.7796630859375	2	481.248152	960.481751	0.21146	0.00010176	-0.93328	-0.00044914	-0.72183	-0.00034738	481.2476001947904	64.827	0.40306	64.827	64.631	65.034	0					13	9	2	0	0	0	0.026672	1	5924	5924		35.201	15.841	1	364560	+		672	20563	457	458	1051	1051					-7.064554142743873E-05
AFGKINSKINK	11	Unmodified	_AFGKINSKINK_					0	0	0			REV__tr|A0A7D6VNW0|A0A7D6VNW0_9CLOTLTAsynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19795PE=3SV=1	REV__tr|A0A7D6VNW0|A0A7D6VNW0_9CLOTLTAsynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19795PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	611.3170776367188	2	610.361505	1218.70846	1.2009	0.00073296	3.046	0.0018591	4.2468	0.0025921	610.3630689651319	156.55	1.7631	156.55	155.73	157.5	0					54	34	2	0	0	0	0.025988	1	18339	18339		16.717	0	1	271000	+		673	31209	458	459	1052	1052					0.10785054214125012
AFGLVPSLCY	10	Acetyl (Protein N-term),Carbamidomethyl (C)	_(Acetyl (Protein N-term))AFGLVPSLC(Carbamidomethyl (C))Y_	AFGLVPSLC(1)Y		AFGLVPSLC(74)Y		1	1	0		L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|248|2|anti-sense;L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|159|1|anti-sense;L1PA7_dup282|chr1:88818677-88820142:+|1.0289078366989055|0.4624574098713206|1.15|428.0|50|1|anti-sense	L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|248|2|anti-sense	L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|248|2|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	584.7920532226562	2	584.788992	1167.56343	0.47903	0.00028013	4.2004	0.0024564	4.6794	0.0027365	584.7912197364769	159.31	1.1696	159.31	159.04	160.21	0					43	23	4	0	0	0	0.35697	1	18686	18686		73.975	7.5455	1	133460			674	14735	459	460	1053	1053	169				-0.01364749977210522
AFGSALTF	8	Unmodified	_AFGSALTF_					0	0	0		tr|A0A553SJF2|A0A553SJF2_NIACI3-dehydroquinatedehydrataseOS=NialliacirculansOX=1397GN=aroDPE=3SV=1	tr|A0A553SJF2|A0A553SJF2_NIACI3-dehydroquinatedehydrataseOS=NialliacirculansOX=1397GN=aroDPE=3SV=1	tr|A0A553SJF2|A0A553SJF2_NIACI3-dehydroquinatedehydrataseOS=NialliacirculansOX=1397GN=aroDPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.2320251464844	2	407.210704	812.406855	0.3941	0.00016048	-0.19808	-8.066E-05	0.19602	7.9823E-05	407.2104938373258	66.104	0.75122	66.104	65.867	66.619	0					26	18	2	0	0	0	0.028476	1	6169	6169		37.028	10.232	1	1388300			675	33496	460	461	1054	1054					-0.006852470853914383
AFHQLLDL	8	Unmodified	_AFHQLLDL_					0	0	0		ENST00000301067.11_1_12:49432587-49432647:-|nuORF	ENST00000301067.11_1_12:49432587-49432647:-|nuORF	ENST00000301067.11_1_12:49432587-49432647:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.306640625	2	478.763635	955.512717	-0.27698	-0.00013261	-3.5442	-0.0016968	-3.8212	-0.0018294	478.76175325468773	48.653	0.30749	48.653	48.544	48.851	0					9	6	2	0	0	0	0.028476	1	3571	3571		47.916	23.713	1	129840			676	10183	461	462	1055	1055					0.03318088760090632
AFHVCSQE	8	Unmodified	_AFHVCSQE_					0	0	0			REV__ENSG00000182752|ENST00000328252|PAPPA	REV__ENSG00000182752|ENST00000328252|PAPPA	MULTI-MSMS	OvCa99_classI_Rep5	1	460.7016906738281	2	460.700177	919.385802	-0.16479	-7.5918E-05	3.6596	0.001686	3.4948	0.0016101	460.7018105895419	22.565	4.1216	22.565	21.422	25.544	0					192	96	4	0	0	0	0.45246	2	233	211;233		82.305	13.82	1	499350	+		677	22315	462	463	1056;1057	1057					-0.07711580456543743
AFHVCSQE	8	Unmodified	_AFHVCSQE_					0	0	0			REV__ENSG00000182752|ENST00000328252|PAPPA	REV__ENSG00000182752|ENST00000328252|PAPPA	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	460.700177	919.385802	3.6993	0.0017043	-0.43701	-0.00020133	3.2623	0.0015029	460.69993588883796	25.12	1.0176	22.41	22.261	23.279	-2.7097	-0.077202	-0.0023822	NaN	82.305	37	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87303	+		678	22315	462	463							-0.07711580456543743
AFIEKHWTF	9	Unmodified	_AFIEKHWTF_					0	0	0		nc|ENSG00000149474|Q9H8E8-2|KAT14;ENSG00000149474|ENST00000688188|KAT14;nc|ENSG00000149474|Q9H8E8|KAT14	nc|ENSG00000149474|Q9H8E8-2|KAT14	nc|ENSG00000149474|Q9H8E8-2|KAT14	MULTI-MSMS	OvCa99_classI_Rep5	1	589.8060913085938	2	589.803291	1177.59203	1.6496	0.00097295	0.59467	0.00035074	2.2443	0.0013237	589.8035566106397	91.238	1.153	91.238	90.899	92.052	0					78	27	4	0	0	0	0.064985	1	9815	9815		110.12	19.75	1	5846300			679	5460	463	464	1058	1058					0.010337357142361725
AFIKRVFC	8	Unmodified	_AFIKRVFC_					0	0	0		ENST00000594708.1_1_9:72873172-72873439:-|nuORF	ENST00000594708.1_1_9:72873172-72873439:-|nuORF	ENST00000594708.1_1_9:72873172-72873439:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.2791748046875	2	492.278398	982.542243	-0.046023	-2.2656E-05	2.9011	0.0014281	2.855	0.0014055	492.2797952124057	104.64	1.6326	102.52	102.01	103.64	-2.1192					63	31	3	0	0	0	0.66704	1	9485	9485		50.025	0.58299	1	154220			680	14169	464	465	1059	1059					0.05027329504582667
AFIKRVFC	8	Unmodified	_AFIKRVFC_					0	0	0		ENST00000594708.1_1_9:72873172-72873439:-|nuORF	ENST00000594708.1_1_9:72873172-72873439:-|nuORF	ENST00000594708.1_1_9:72873172-72873439:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	492.278398	982.542243	-0.28903	-0.00014228	2.7879	0.0013724	2.4988	0.0012301	492.2797022448664	103.09	1.5786	102.41	101.93	103.51	-0.68459	-0.079129	9.6395E-05	NaN	50.025	71	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152180			681	14169	464	465							0.05027329504582667
AFIKRVFC	8	Unmodified	_AFIKRVFC_					0	0	0		ENST00000594708.1_1_9:72873172-72873439:-|nuORF	ENST00000594708.1_1_9:72873172-72873439:-|nuORF	ENST00000594708.1_1_9:72873172-72873439:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	492.278398	982.542243	0.022935	1.129E-05	1.8641	0.00091764	1.887	0.00092893	492.27968155777666	103.97	1.617	102.54	101.97	103.59	-1.4347	0.050335	-0.00081313	NaN	50.025	93	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182660			682	14169	464	465							0.05027329504582667
AFIRPKMPF	9	Unmodified	_AFIRPKMPF_					0	0	0		ENST00000467118.1_1_22:39064011-39066786:+|nuORF;ENST00000489847.1_1_22:39052727-39066786:+|nuORF;ENST00000485501.5_1_22:39052673-39067032:+|nuORF;ENST00000492537.5_1_22:39052727-39067259:+|nuORF;ENST00000492576.5_1_22:39052705-39067032:+|nuORF	ENST00000467118.1_1_22:39064011-39066786:+|nuORF	ENST00000467118.1_1_22:39064011-39066786:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.30029296875	2	553.812605	1105.61066	-0.023852	-1.321E-05	2.8564	0.0015819	2.8325	0.0015687	553.8144431229028	105.12	0.70074	103.11	102.85	103.55	-2.0161					26	13	3	0	0	0	0.027462	1	9563	9563		47.916	18.766	1	47168			683	12304	465	466	1060	1060					0.06207574084442058
AFKIFKCL	8	Unmodified	_AFKIFKCL_					0	0	0			REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.2174072265625	2	485.283149	968.551745	-0.015736	-7.6365E-06	0.047156	2.2884E-05	0.03142	1.5247E-05	485.2830668642737	31.051	0.43979	31.051	30.731	31.171	0					11	8	2	0	0	0	0.028476	1	1238	1238		8.2313	0	1	64247	+		684	21744	466	467	1061	1061					0.06621097790105068
AFKKCLMRV	9	Unmodified	_AFKKCLMRV_					0	0	0		ENST00000367577.6_2_1:181059693-181059858:+|nuORF	ENST00000367577.6_2_1:181059693-181059858:+|nuORF	ENST00000367577.6_2_1:181059693-181059858:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	548.3087768554688	2	548.311915	1094.60928	-0.2992	-0.00016405	-2.3542	-0.0012909	-2.6534	-0.0014549	548.3107504706112	22.771	0.42326	22.771	22.431	22.854	0					14	9	3	0	0	0	0.6653	1	252	252		24.203	3.7209	1	47874			685	10849	467	468	1062	1062					0.06575616724035172
AFKKELRQFV	10	Unmodified	_AFKKELRQFV_					0	0	0		nc|ENSG00000173786|P09543-2|CNP;ENSG00000173786|ENST00000393892|CNP	nc|ENSG00000173786|P09543-2|CNP	nc|ENSG00000173786|P09543-2|CNP	MSMS	OvCa9_classI_Rep4_	4	633.3703002929688	2	633.371872	1264.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	154.61	1	153.16	152.66	153.66	-1.4516								0	0	0	0.14049	1	15306	15306		23.042	1.0826	1				686	7414	468	469	1063	1063					0.10741644593804267
AFKKIMTG	8	Unmodified	_AFKKIMTG_					0	0	0		tr|A0A553SR73|A0A553SR73_NIACIBifunctionaltranscriptionalactivator/DNArepairproteinAdaOS=NialliacirculansOX=1397GN=CEQ21_00500PE=4SV=1	tr|A0A553SR73|A0A553SR73_NIACIBifunctionaltranscriptionalactivator/DNArepairproteinAdaOS=NialliacirculansOX=1397GN=CEQ21_00500PE=4SV=1	tr|A0A553SR73|A0A553SR73_NIACIBifunctionaltranscriptionalactivator/DNArepairproteinAdaOS=NialliacirculansOX=1397GN=CEQ21_00500PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	448.2589416503906	2	448.257131	894.499709	0.91254	0.00040905	3.3889	0.0015191	4.3015	0.0019282	448.25856617736815	142.24	1.5311	142.01	141.52	143.05	-0.22696					82	30	4	0	0	0	0.75661	1	14296	14296		19.36	4.6959	1	131560			687	34233	469	470	1064	1064					0.048239343763498255
AFKPLLLK	8	Unmodified	_AFKPLLLK_					0	0	0			REV__tr|A0A7D6W360|A0A7D6W360_9CLOTDUF2087domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08735PE=4SV=1	REV__tr|A0A7D6W360|A0A7D6W360_9CLOTDUF2087domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08735PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	465.2872009277344	2	465.312764	928.610974	0.39557	0.00018406	0.65927	0.00030677	1.0548	0.00049083	465.31412490163774	125.13	0.39437	124.9	124.61	125.01	-0.2359					10	7	2	0	0	0	0.028476	1	12154	12154		65.803	33.848	1	13291	+		688	31910	470	471	1065	1065					0.1438131707594721
AFLEQQLKLL	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AFLEQQLKLL_					1	0	0			REV__ENST00000507798.1_3_5:68471281-68471335:+|nuORF	REV__ENST00000507798.1_3_5:68471281-68471335:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	622.8666381835938	2	622.866089	1243.71762	0.080852	5.036E-05	0.055178	3.4369E-05	0.13603	8.4729E-05	622.8660250967379	130.93	1.4333	130.7	130.26	131.69	-0.22696					79	28	4	0	0	0	0.28845	2	12863	12863;12910		82.241	23.459	1	289850	+		689	26904	471	472	1066;1067	1066					0.10551402779810815
AFLEQQLKLL	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AFLEQQLKLL_					1	0	0			REV__ENST00000507798.1_3_5:68471281-68471335:+|nuORF	REV__ENST00000507798.1_3_5:68471281-68471335:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	622.8660888671875	2	622.866089	1243.71762	0.88915	0.00055382	-0.81681	-0.00050876	0.072344	4.5061E-05	622.8654000115959	131.71	1.5392	130.58	130.24	131.78	-1.1249					80	30	4	0	0	0	0.42962	1	10508	10508		64.207	7.4862	1	257180	+		690	26904	471	472	1068	1068					0.10551402779810815
AFLGSKYDI	9	Unmodified	_AFLGSKYDI_					0	0	0			REV__tr|A0A7D6ZTT5|A0A7D6ZTT5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12435PE=4SV=1	REV__tr|A0A7D6ZTT5|A0A7D6ZTT5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12435PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.26763916015625	2	507.26875	1012.52295	-2.4376	-0.0012365	-3.3003	-0.0016741	-5.7379	-0.0029107	507.26701545715287	87.855	2.4969	85.229	84.901	87.398	-2.6269					133	49	4	0	0	0	0.42676	1	7543	7543		49.442	1.7842	1	2015000	+		691	32209	472	473	1069	1069					0.01718651694648088
AFLKVERGHA	10	Unmodified	_AFLKVERGHA_					0	0	0		ENSG00000130347|ENST00000369063|RTN4IP1;ENST00000493619.1_1_6:107019873-107020229:-|nuORF;nc|ENSG00000130347|Q8WWV3-2|RTN4IP1	ENSG00000130347|ENST00000369063|RTN4IP1	ENSG00000130347|ENST00000369063|RTN4IP1	MULTI-MSMS	OvCa9_classI_Rep2	2	564.323974609375	2	564.31964	1126.62473	3.1763	0.0017924	3.3999	0.0019186	6.5762	0.0037111	564.3213788592631	26.344	0.90757	23.635	23.418	24.326	-2.7097					50	25	3	0	0	0	0.84764	1	392	392		12.959	1.4482	1	124260			692	3981	473	474	1070	1070					0.06647942837093979
AFLLHKKAI	9	Unmodified	_AFLLHKKAI_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2730712890625	2	520.834394	1039.65424	2.5165	0.0013107	-4.2989	-0.002239	-1.7824	-0.00092833	520.8320196116446	89.754	0.5038	89.754	89.516	90.02	0					25	11	3	0	0	0	0.027462	1	9572	9572		45.952	10.334	1	742230			693	3959	474	475	1071	1071					0.13599506853211096
AFLLLMDIHP	10	Unmodified	_AFLLLMDIHP_					0	0	0			REV__tr|A0A553SLQ4|A0A553SLQ4_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_21110PE=4SV=1	REV__tr|A0A553SLQ4|A0A553SLQ4_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_21110PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.3300170898438	2	585.323002	1168.63145	2.5437	0.0014889	-2.5544	-0.0014952	-0.01071	-6.2686E-06	585.3214573771775	96.275	0.54531	96.275	95.997	96.543	0					27	12	3	0	0	0	0.026612	1	10550	10550		55.504	19.886	1	537710	+		694	30251	475	476	1072	1072					0.05388119673443725
AFLLLMDIHP	10	Unmodified	_AFLLLMDIHP_					0	0	0			REV__tr|A0A553SLQ4|A0A553SLQ4_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_21110PE=4SV=1	REV__tr|A0A553SLQ4|A0A553SLQ4_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_21110PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	585.323002	1168.63145	-0.12654	-7.407E-05	1.7857	0.0010452	1.6591	0.00097113	585.3239044551624	97.205	0.93851	96.247	95.97	96.908	-0.95857	0.0085792	-0.00048356	NaN	37.159	44	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191950	+		695	30251	475	476							0.05388119673443725
AFLLLMDIHP	10	Unmodified	_AFLLLMDIHP_					0	0	0			REV__tr|A0A553SLQ4|A0A553SLQ4_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_21110PE=4SV=1	REV__tr|A0A553SLQ4|A0A553SLQ4_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_21110PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	585.323002	1168.63145	-1.764	-0.0010325	3.4383	0.0020125	1.6743	0.00098003	585.3247624999174	97.994	1.0767	96.235	95.962	97.038	-1.7595	-0.003349	0.0014511	NaN	37.159	58	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260240	+		696	30251	475	476							0.05388119673443725
AFLLLMDIHP	10	Unmodified	_AFLLLMDIHP_					0	0	0			REV__tr|A0A553SLQ4|A0A553SLQ4_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_21110PE=4SV=1	REV__tr|A0A553SLQ4|A0A553SLQ4_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_21110PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	585.323002	1168.63145	-0.60174	-0.00035221	2.5857	0.0015135	1.9839	0.0011612	585.3242722319395	98.574	1.6833	96.196	95.267	96.95	-2.3786	-0.042485	0.00045295	NaN	37.159	59	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250380	+		697	30251	475	476							0.05388119673443725
AFLQVVFKRH	10	Unmodified	_AFLQVVFKRH_					0	0	0			REV__ENSG00000066583|ENST00000173527|ISOC1	REV__ENSG00000066583|ENST00000173527|ISOC1	MULTI-MSMS	OvCa9_classI_Rep3	3	622.8655395507812	2	622.866757	1243.71896	0.88915	0.00055382	-1.8904	-0.0011775	-1.0012	-0.00062364	622.8654000115959	131.71	1.5392	130.58	130.24	131.78	-1.1249					80	30	4	0	0	0	0.69986	1	10565	10565		30.504	4.9296	1	257180	+		698	16818	476	477	1073	1073					0.10685081659221396
AFMDDMTGI	9	Unmodified	_AFMDDMTGI_					0	0	0		tr|A0A7D7A1K3|A0A7D7A1K3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12695PE=4SV=1	tr|A0A7D7A1K3|A0A7D7A1K3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12695PE=4SV=1	tr|A0A7D7A1K3|A0A7D7A1K3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12695PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.3054504394531	2	500.709353	999.404154	-0.70448	-0.00035274	0.69759	0.00034929	-0.0068987	-3.4542E-06	500.7093999101639	99.02	0.46642	96.694	96.484	96.951	-2.3253					13	8	2	0	0	0	0.027462	1	8802	8802		29.15	4.6455	1	18349			699	36039	477	478	1074	1074					-0.09557206596855394
AFMHKIPSV	9	Unmodified	_AFMHKIPSV_					0	0	0			REV__tr|A0A553SFV8|A0A553SFV8_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09605PE=4SV=1	REV__tr|A0A553SFV8|A0A553SFV8_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09605PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	515.2836303710938	2	515.281137	1028.54772	0.94125	0.00048501	1.2313	0.00063447	2.1726	0.0011195	515.2818157223961	106.61	4.2629	105.34	104.28	108.54	-1.267					165	82	5	0	0	0	0.65476	1	7590	7590		25.45	4.5032	1	4317700	+		700	29629	478	479	1075	1075					0.03459008296385946
AFMKGVFTF	9	Unmodified	_AFMKGVFTF_					0	0	0		ENST00000489739.1_1_9:139685858-139686514:+|nuORF;ENSG00000244187|ENST00000290079|TMEM141;ENST00000465017.5_1_9:139685862-139687281:+|nuORF	ENST00000489739.1_1_9:139685858-139686514:+|nuORF	ENST00000489739.1_1_9:139685858-139686514:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	524.2720947265625	2	524.270238	1046.52592	1.8719	0.00098136	0.43109	0.00022601	2.3029	0.0012074	524.2703344382161	121.92	1.5715	121.92	121.66	123.23	0					61	33	4	0	0	0	0.036687	2	14021	14021;14041		129.68	61.198	1	1198800			701	9392	479	480	1076;1077	1076					0.004522035478203179
AFMLLFKDLI	10	Oxidation (M)	_AFM(Oxidation (M))LLFKDLI_		AFM(1)LLFKDLI		AFM(51)LLFKDLI	0	0	1		nc|ENSG00000065609|O60641-3|SNAP91;nc|ENSG00000065609|O60641-4|SNAP91;ENSG00000065609|ENST00000369694|SNAP91	nc|ENSG00000065609|O60641-3|SNAP91	nc|ENSG00000065609|O60641-3|SNAP91	MULTI-MSMS	OvCa9_classI_Rep2	2	409.56524658203125	3	409.566632	1225.67807	0.26604	0.00010896	-0.27457	-0.00011246	-0.0085346	-3.4955E-06	409.5665107141036	60.403	1.4723	57.633	57.032	58.504	-2.7702					87	27	4	0	0	0	0.52439	1	4459	4459		51.193	8.3284	1	535930			702	1333	480	481	1078	1078		50			0.07425559504713419
AFPAVSAEPF	10	Unmodified	_AFPAVSAEPF_					0	0	0		ENST00000520124.5_1_8:22005675-22011752:-|nuORF;nc|ENSG00000168481|Q8N145-2|LGI3;LGI3|p.L527Sfs*14|1|0.09|ENSG00000168481|chr8:22148228-22148229|-/A|frameshift_variant;ENSG00000168481|ENST00000306317|LGI3	ENST00000520124.5_1_8:22005675-22011752:-|nuORF	ENST00000520124.5_1_8:22005675-22011752:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	518.2623901367188	2	518.260925	1034.5073	1.0128	0.00052487	2.2119	0.0011464	3.2247	0.0016712	518.2618451712167	129.49	1.6325	128.38	127.94	129.57	-1.1121					68	32	4	0	0	0	0.45225	1	10235	10235		60.972	13.315	1	413920			703	6911	481	482	1079	1079					-0.00857634822386899
AFPISEKLAQ	10	Unmodified	_AFPISEKLAQ_					0	0	0			REV__ENSG00000108387|ENST00000672673|SEPTIN4	REV__ENSG00000108387|ENST00000672673|SEPTIN4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.2559814453125	2	552.308406	1102.60226	-0.77509	-0.00042809	-0.27497	-0.00015187	-1.0501	-0.00057996	552.3081253935612	73.641	1.3386	70.245	69.979	71.317	-3.3961					74	27	4	0	0	0	0.026522	1	5719	5719		75.043	6.2565	1	1302400	+		704	17884	482	483	1080	1080					0.05506298648788288
AFPISEKLAQ	10	Unmodified	_AFPISEKLAQ_					0	0	0			REV__ENSG00000108387|ENST00000672673|SEPTIN4	REV__ENSG00000108387|ENST00000672673|SEPTIN4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	552.308406	1102.60226	0.83871	0.00046322	-1.6274	-0.00089884	-0.78873	-0.00043562	552.3070576482384	72.587	1.7239	70.187	69.54	71.264	-2.3999	-0.028609	-0.0012062	NaN	75.043	84	32	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	254440	+		705	17884	482	483							0.05506298648788288
AFPLSETR	8	Unmodified	_AFPLSETR_					0	0	0			REV__ENST00000498360.5_1_1:225142255-225148920:+|nuORF	REV__ENST00000498360.5_1_1:225142255-225148920:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	460.70172119140625	2	460.745442	919.476331	-0.16662	-7.6769E-05	-3.2208	-0.001484	-3.3874	-0.0015607	460.74399577171266	22.842	0.19358	22.842	22.7	22.894	0					7	4	2	0	0	0	0.028476	1	255	255		23.042	3.6825	1	16322	+		706	26793	483	484	1081	1081					0.013372118633810715
AFPPKKLF	8	Unmodified	_AFPPKKLF_					0	0	0		nc|ENSG00000115234|Q15036-2|SNX17;ENSG00000115234|ENST00000233575|SNX17;FOSL2-SNX17|1|fusion;ENST00000489402.1_1_2:27593562-27595723:+|nuORF	nc|ENSG00000115234|Q15036-2|SNX17	nc|ENSG00000115234|Q15036-2|SNX17	MULTI-MSMS	OvCa9_classI_Rep2	2	474.29119873046875	2	474.289288	946.564024	0.95771	0.00045423	2.3999	0.0011383	3.3577	0.0015925	474.29028339159595	128.45	2.7168	128.22	127.09	129.81	-0.22696					89	54	3	0	0	0	0.75991	1	12756	12756		21.702	3.3779	1	54113			707	3074	484	485	1082	1082					0.08860457524792764
AFQDMLHNRE	10	Unmodified	_AFQDMLHNRE_					0	0	0		ENSG00000144821|ENST00000693548|MYH15;MYH15|p.A228Gfs*20|1|0.08|ENSG00000144821|chr3:108495868-108495869|-/C|frameshift_variant	ENSG00000144821|ENST00000693548|MYH15	ENSG00000144821|ENST00000693548|MYH15	MULTI-SECPEP	OvCa99_classI_Rep5	1	630.2614135742188	2	630.793129	1259.5717	1.4572	0.00091917	-2.8472	-0.001796	-1.3901	-0.00087685	630.7913347271507	150.34	0.54758	150.34	150.1	150.64	0					13	10	2	0	0	0	0.026891	1	17575	17575		39.253	20.991	1	43335			708	5183	485	486	1083	1083					-0.04769803007889095
AFRKLFGG	8	Unmodified	_AFRKLFGG_					0	0	0			REV__ENSG00000181195|ENST00000451791|PENK	REV__ENSG00000181195|ENST00000451791|PENK	MULTI-MSMS	OvCa9_classI_Rep3	3	448.2586669921875	2	448.261062	894.507572	-2.462	-0.0011036	-1.7398	-0.0007799	-4.2018	-0.0018835	448.2601337945915	142.71	1.2357	141.7	141.38	142.62	-1.0102					68	24	5	0	0	0	0.75991	1	11838	11838		21.702	1.2205	1	329850	+		709	22220	486	487	1084	1084					0.056098296881373244
AFRRSYTLN	9	Unmodified	_AFRRSYTLN_					0	0	0		ENST00000530879.1_1_8:146029451-146033777:+|nuORF;ENSG00000197363|ENST00000359971|ZNF517	ENST00000530879.1_1_8:146029451-146033777:+|nuORF	ENST00000530879.1_1_8:146029451-146033777:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	564.2996215820312	2	564.301447	1126.58834	1.1607	0.00065497	-3.7213	-0.0020999	-2.5606	-0.001445	564.2991848172364	123.21	1.3481	122.17	121.84	123.18	-1.0377					40	23	2	0	0	0	0.46356	1	9505	9505		45.972	0.020292	1	156180			710	8706	487	488	1085	1085					0.030110659403817408
AFRSVFNGLG	10	Unmodified	_AFRSVFNGLG_					0	0	0			REV__ENSG00000163328|ENST00000392552|GPR155	REV__ENSG00000163328|ENST00000392552|GPR155	MULTI-MSMS	OvCa9_classI_Rep2	2	534.2830200195312	2	534.285266	1066.55598	-2.6253	-0.0014027	0.2567	0.00013715	-2.3686	-0.0012655	534.2853249457943	142.91	1.1362	142.68	142.26	143.4	-0.22696					49	22	3	0	0	0	0.71192	1	14328	14328		29.15	4.9468	1	71580	+		711	20827	488	489	1086	1086					0.025362785373772567
AFRVPGLI	8	Unmodified	_AFRVPGLI_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	435.87371826171875	2	436.771263	871.527973	0.82927	0.0003622	-0.4577	-0.00019991	0.37157	0.00016229	436.7709030402595	111.26	1.0533	109.72	109.5	110.55	-1.5408					26	19	2	0	0	0	0.028476	1	10302	10302		14.664	0	1	23774			712	5793;36288	489	490	1087	1087					0.08707000347953908
AFSMRKVPN	9	Unmodified	_AFSMRKVPN_					0	0	0		ENSG00000147003|ENST00000380342|CLTRN	ENSG00000147003|ENST00000380342|CLTRN	ENSG00000147003|ENST00000380342|CLTRN	MULTI-MSMS	OvCa99_classI_Rep5	1	525.2815551757812	2	525.281669	1048.54878	1.0807	0.00056765	-2.9473	-0.0015481	-1.8666	-0.0009805	525.2801071117069	119.63	0.75906	119.63	119.43	120.18	0					29	18	2	0	0	0	0.51865	1	13741	13741		40.778	0	1	593110			713	5322	490	491	1088	1088					0.026452226652963873
AFSVFGQVERA	11	Unmodified	_AFSVFGQVERA_					0	0	0		ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MSMS	OvCa99_classI_Rep5	1	605.81689453125	2	605.814387	1209.61422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.625	1	99.625	99.125	100.13	0								0	0	0	0.13913	1	11018	11018		58.63	3.8533	1				714	5334	491	492	1089	1089					0.01779915392012299
AFTAAERVLN	10	Unmodified	_AFTAAERVLN_					0	0	0			REV__VCL-ADK|5|fusion	REV__VCL-ADK|5|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.3177490234375	2	546.29583	1090.57711	-0.36413	-0.00019892	-3.7373	-0.0020417	-4.1015	-0.0022406	546.2931946988136	143	1.6377	141.56	140.52	142.16	-1.4427					47	31	3	0	0	0	0.026849	1	13933	13933		13.454	0	1	31960	+		715	32755	492	493	1090	1090					0.03544243846226891
AFVASILSQL	10	Unmodified	_AFVASILSQL_					0	0	0			REV__ENSG00000149150|ENST00000278426|SLC43A1	REV__ENSG00000149150|ENST00000278426|SLC43A1	MULTI-MSMS	OvCa9_classI_Rep2	2	524.805908203125	2	524.8055	1047.59645	-1.0909	-0.00057252	-1.8521	-0.00097202	-2.9431	-0.0015445	524.8041430606991	117.22	1.2891	117.09	116.96	118.25	-0.12869					58	25	3	0	0	0	0.32926	1	11229	11229		77.318	7.69	1	262990	+		716	20146	493	494	1091	1091					0.07455200137133033
AFVAYPEALTL	11	Unmodified	_AFVAYPEALTL_					0	0	0		ENSG00000196517|ENST00000372310|SLC6A9;nc|ENSG00000196517|P48067-3|SLC6A9;nc|ENSG00000196517|P48067|SLC6A9	ENSG00000196517|ENST00000372310|SLC6A9	ENSG00000196517|ENST00000372310|SLC6A9	MULTI-MSMS	OvCa9_classI_Rep3	3	598.3248901367188	2	597.823889	1193.63323	-3.9508	-0.0023619	4.3298	0.0025885	0.37898	0.00022656	597.8264327163745	153.21	0.96877	152.24	151.99	152.96	-0.97301					58	20	4	0	0	0	0.26031	1	13136	13136		71.877	7.6702	1	209360			717	8619	494	495	1092	1092					0.044154519630410505
AFVAYPEALTL	11	Unmodified	_AFVAYPEALTL_					0	0	0		ENSG00000196517|ENST00000372310|SLC6A9;nc|ENSG00000196517|P48067-3|SLC6A9;nc|ENSG00000196517|P48067|SLC6A9	ENSG00000196517|ENST00000372310|SLC6A9	ENSG00000196517|ENST00000372310|SLC6A9	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8252563476562	2	597.823889	1193.63323	-3.5409	-0.0021169	3.5707	0.0021346	0.029766	1.7795E-05	597.8259099431253	153.72	1.0458	152.27	151.95	153	-1.4516					81	31	4	0	0	0	0.67529	1	15251	15251		37.812	4.9991	1	181810			718	8619	494	495	1093	1093					0.044154519630410505
AFVGTLLAAM	10	Oxidation (M)	_AFVGTLLAAM(Oxidation (M))_		AFVGTLLAAM(1)		AFVGTLLAAM(85)	0	0	1			REV__ENSG00000233493|ENST00000444469|TMEM238	REV__ENSG00000233493|ENST00000444469|TMEM238	MULTI-MSMS	OvCa99_classI_Rep5	1	505.272705078125	2	505.272978	1008.5314	1.1188	0.00056531	-2.3026	-0.0011635	-1.1838	-0.00059815	505.2716726541482	143.09	1.1757	143.09	142.69	143.86	0					58	23	5	0	0	0	0.26259	1	16724	16724		85.359	11.385	1	640620	+		719	23397	495	496	1094	1094		546			0.027478823396336338
AFVGVKFRE	9	Unmodified	_AFVGVKFRE_					0	0	0		ENSG00000186810|ENST00000373693|CXCR3;nc|ENSG00000186810|P49682-2|CXCR3	ENSG00000186810|ENST00000373693|CXCR3	ENSG00000186810|ENST00000373693|CXCR3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.8250732421875	2	526.798009	1051.58147	-1.8624	-0.00098111	-2.9469	-0.0015524	-4.8093	-0.0025335	526.7963858548212	72.283	0.58559	68.826	68.656	69.241	-3.4563					16	11	2	0	0	0	0.027462	1	5594	5594		42.396	13.247	1	51838			720	8363	496	497	1095	1095					0.05773753059793307
AFVKVPDNL	9	Unmodified	_AFVKVPDNL_					0	0	0			REV__tr|A0A553SR98|A0A553SR98_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00710PE=3SV=1	REV__tr|A0A553SR98|A0A553SR98_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00710PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	501.7825012207031	2	501.784567	1001.55458	0.091507	4.5917E-05	-4.0509	-0.0020327	-3.9594	-0.0019867	501.7826806319989	70.776	0.46527	70.776	70.565	71.031	0					24	11	3	0	0	0	0.19758	1	6811	6811		76.774	8.2894	1	2961500	+		721	30708	497	498	1096	1096					0.05386644448606148
AFVKVPDNL	9	Unmodified	_AFVKVPDNL_					0	0	0			REV__tr|A0A553SR98|A0A553SR98_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00710PE=3SV=1	REV__tr|A0A553SR98|A0A553SR98_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00710PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	501.784567	1001.55458	-0.67292	-0.00033766	-3.8545	-0.0019341	-4.5274	-0.0022718	501.78248138211046	73.255	0.83326	70.855	70.325	71.158	-2.3999	0.072108	0.00011661	NaN	76.774	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36869	+		722	30708	497	498							0.05386644448606148
AFVKVPDNL	9	Unmodified	_AFVKVPDNL_					0	0	0			REV__tr|A0A553SR98|A0A553SR98_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00710PE=3SV=1	REV__tr|A0A553SR98|A0A553SR98_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00710PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	501.784567	1001.55458	-0.40769	-0.00020457	-3.9582	-0.0019862	-4.3659	-0.0021907	501.78231183166895	73.206	0.79323	70.719	70.482	71.275	-2.4873	-0.064535	1.2493E-05	NaN	76.774	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63796	+		723	30708	497	498							0.05386644448606148
AFVLLHKRIR	10	Unmodified	_AFVLLHKRIR_					0	0	0			REV__nc|ENSG00000029364|Q9NUM3-3|SLC39A9	REV__nc|ENSG00000029364|Q9NUM3-3|SLC39A9	MULTI-SECPEP	OvCa9_classI_Rep3	3	626.3890991210938	2	626.903674	1251.7928	-6.1616	-0.0038627	1.2607	0.00079032	-4.9009	-0.0030724	626.9031955144832	164.66	0.39825	163.25	163.18	163.57	-1.4083					18	14	2	0	0	0	0.027228	1	14385	14385		16.473	2.336	1	11607	+		724	16580	498	499	1097	1097					0.1769704982152689
AFVLRDLL	8	Unmodified	_AFVLRDLL_					0	0	0			REV__ENSG00000176894|ENST00000317479|PXMP2	REV__ENSG00000176894|ENST00000317479|PXMP2	MULTI-MSMS	OvCa99_classI_Rep5	1	473.7902526855469	2	473.789653	945.564752	-0.84386	-0.00039981	-1.4735	-0.00069811	-2.3173	-0.0010979	473.7887587496097	103.63	0.50926	103.63	103.43	103.94	0					21	11	3	0	0	0	0.73205	1	11599	11599		35.618	2.1027	1	907240	+		725	21973	499	500	1098	1098					0.08979252173844543
AFVLRDLL	8	Unmodified	_AFVLRDLL_					0	0	0			REV__ENSG00000176894|ENST00000317479|PXMP2	REV__ENSG00000176894|ENST00000317479|PXMP2	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	473.789653	945.564752	-0.84386	-0.00039981	-1.4735	-0.00069811	-2.3173	-0.0010979	473.7887587496097	103.63	0.50926	103.63	103.43	103.94	0	0	0	NaN	35.618	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	907240	+		726	21973	499	500							0.08979252173844543
AFVYPWVPPPI	11	Unmodified	_AFVYPWVPPPI_					0	0	0		ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	MULTI-SECPEP	OvCa9_classI_Rep2	2	429.25018310546875	3	429.237504	1284.69068	1.0675	0.0004582	-0.6875	-0.0002951	0.37999	0.0001631	429.5731253558065	90.873	0.46581	89.637	89.488	89.954	-1.2355					12	8	2	0	0	0	0.025332	1	8061	8061		41.427	0	1	12297			727	1872	500	501	1099	1099					0.05972338959281842
AFWKQMAN	8	Unmodified	_AFWKQMAN_					0	0	0		ENSG00000072840|ENST00000264956|EVC	ENSG00000072840|ENST00000264956|EVC	ENSG00000072840|ENST00000264956|EVC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.7596130371094	2	498.242012	994.469472	-0.40487	-0.00020172	4.2039	0.0020946	3.7991	0.0018929	498.2437034948556	65.252	0.57843	61.767	61.552	62.13	-3.4854					18	11	2	0	0	0	0.028476	1	4707	4707		52.299	15.852	1	69156			728	1482	501	502	1100	1100					-0.027984242888464905
AFYASKNR	8	Unmodified	_AFYASKNR_					0	0	0			REV__ENST00000477632.5_1_2:70037634-70052644:+|nuORF	REV__ENST00000477632.5_1_2:70037634-70052644:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.75286865234375	2	478.751059	955.487565	-0.5524	-0.00026446	3.2016	0.0015328	2.6492	0.0012683	478.75267825392433	51.072	2.719	47.898	47.464	50.183	-3.1734					136	53	4	0	0	0	0.66704	1	3027	3027		50.025	0.81375	1	6347700	+		729	22883	502	503	1101	1101					0.008040339575245525
AFYFDLFL	8	Unmodified	_AFYFDLFL_					0	0	0			REV__L1M4b_dup409|chr2:99315365-99316132:-|1.0427257755468466|0.2824116377342518|1.88|429.0|44|2|anti-sense	REV__L1M4b_dup409|chr2:99315365-99316132:-|1.0427257755468466|0.2824116377342518|1.88|429.0|44|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	518.2627563476562	2	518.262936	1034.51132	1.3847	0.00071764	-2.0999	-0.0010883	-0.71521	-0.00037066	518.2616936757189	128.68	1.5825	128.45	128.13	129.71	-0.22696					76	31	3	0	0	0	0.64377	1	12622	12622		54.765	0	1	418450	+		730	28364	503	504	1102	1102					-0.00455545328691187
AFYKLRKR	8	Unmodified	_AFYKLRKR_					0	0	0			REV__ENSG00000113318|ENST00000265081|MSH3	REV__ENSG00000113318|ENST00000265081|MSH3	MULTI-SECPEP	OvCa9_classI_Rep2	2	542.2972412109375	2	541.335093	1080.65563	-1.1875	-0.00064282	-2.7248	-0.001475	-3.9122	-0.0021178	541.333609804949	32.661	0.4442	29.951	29.828	30.272	-2.7097					14	8	2	0	0	0	0.028476	1	1122	1122		13.775	0	1	18086	+		731	18144	504	505	1103	1103					0.11853140941957463
AFYLKQWR	8	Unmodified	_AFYLKQWR_					0	0	0		ENSG00000139832|ENST00000267328|RAB20	ENSG00000139832|ENST00000267328|RAB20	ENSG00000139832|ENST00000267328|RAB20	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.326904296875	2	556.306001	1110.59745	1.8486	0.0010284	2.393	0.0013313	4.2416	0.0023597	556.3064759813659	85.677	0.99187	83.03	82.8	83.792	-2.6463					25	19	2	0	0	0	0.028476	1	7207	7207		33.516	4.366	1	14500			732	4806	505	506	1104	1104					0.04657459296709021
AGAARGPKRVD	11	Unmodified	_AGAARGPKRVD_					0	0	0			REV__nc|ENSG00000196411|P54760-3|EPHB4	REV__nc|ENSG00000196411|P54760-3|EPHB4	MULTI-MSMS	OvCa9_classI_Rep2	2	549.3134155273438	2	549.312346	1096.61014	-1.9654	-0.0010796	1.0227	0.0005618	-0.94264	-0.0005178	549.3130709406702	37.224	0.93481	34.514	34.238	35.173	-2.7097					44	18	3	0	0	0	0.72064	1	1661	1661		22.58	0.89391	1	132520	+		733	29077	506	507	1105	1105					0.06569870688940682
AGAITFAVM	9	Unmodified	_AGAITFAVM_					0	0	0		tr|A0A553SLA1|A0A553SLA1_NIACIPBP1Afamilypenicillin-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_20225PE=4SV=1	tr|A0A553SLA1|A0A553SLA1_NIACIPBP1Afamilypenicillin-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_20225PE=4SV=1	tr|A0A553SLA1|A0A553SLA1_NIACIPBP1Afamilypenicillin-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_20225PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	441.7151184082031	2	440.733489	879.452425	0.47285	0.0002084	4.1499	0.001829	4.6228	0.0020374	440.73532848543374	50.443	0.26218	50.443	50.332	50.594	0					9	5	2	0	0	0	0.027462	1	3827	3827		25.45	1.2474	1	49564			734	33703	507	508	1106	1106					0.007876551053527692
AGAKLREK	8	Unmodified	_AGAKLREK_					0	0	0			REV__ENSG00000167476|ENST00000300961|JSRP1	REV__ENSG00000167476|ENST00000300961|JSRP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.2141418457031	2	436.769252	871.52395	0.32979	0.00014404	-0.47145	-0.00020591	-0.14166	-6.1874E-05	436.76896215782205	39.044	1.1419	36.118	35.898	37.04	-2.9264					36	22	3	0	0	0	0.028476	1	1591	1591		30.504	13.139	1	50898	+		735	21279	508	509	1107	1107					0.0830491085422409
AGALIAGMC	9	Unmodified	_AGALIAGMC_					0	0	0		ENSG00000216588|ENST00000402988|IGSF23;PPP1R37-IGSF23|1|fusion	ENSG00000216588|ENST00000402988|IGSF23	ENSG00000216588|ENST00000402988|IGSF23	MULTI-MSMS	OvCa99_classI_Rep5	1	403.6988830566406	2	403.698592	805.382631	0.90284	0.00036447	0.054555	2.2024E-05	0.95739	0.0003865	403.6984728080894	24.262	0.44848	24.262	24.137	24.586	0					14	8	2	0	0	0	0.68641	1	433	433		21.702	2.3424	1	68012			736	9214	509	510	1108	1108					-0.027845468349028124
AGASKLKKL	9	Unmodified	_AGASKLKKL_					0	0	0		nc|ENSG00000140750|Q68EM7-3|ARHGAP17;ARHGAP17|p.S762Qfs*22|1|0.08|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17;ENST00000576387.1_1_16:24960717-24966004:-|nuORF;ENST00000575656.5_1_16:24960717-24971282:-|nuORF	nc|ENSG00000140750|Q68EM7-3|ARHGAP17	nc|ENSG00000140750|Q68EM7-3|ARHGAP17	MULTI-MSMS	OvCa99_classI_Rep5	1	458.30279541015625	2	458.302927	914.591301	-0.58993	-0.00027037	0.56663	0.00025969	-0.023306	-1.0681E-05	458.3030374367389	28.71	0.39873	28.71	28.539	28.937	0					17	7	3	0	0	0	0.31747	1	962	962		60.972	4.2509	1	187280			737	106	510	511	1109	1109					0.1305894106518508
AGCCRRREDL	10	Unmodified	_AGCCRRREDL_					0	0	0			REV__ENST00000236192.11_1_1:171707540-171711301:-|nuORF	REV__ENST00000236192.11_1_1:171707540-171711301:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	589.7791137695312	2	589.779499	1177.54444	0.31168	0.00018382	-1.0121	-0.00059689	-0.70039	-0.00041307	589.7787271785925	125.98	1.2829	125.75	125.31	126.59	-0.23589					39	25	2	0	0	0	0.50999	1	12288	12288		52.937	5.2794	1	98267	+		738	23806	511	512	1110	1110					-0.03722609819897116
AGDEERKV	8	Unmodified	_AGDEERKV_					0	0	0		KCNQ3|p.R780Lfs*21|1|0.2|ENSG00000184156|chr8:132129544-132129545|-/TAGGAAATGATGAAACCATCAAC|frameshift_variant;ENSG00000184156|ENST00000388996|KCNQ3	KCNQ3|p.R780Lfs*21|1|0.2|ENSG00000184156|chr8:132129544-132129545|-/TAGGAAATGATGAAACCATCAAC|frameshift_variant	KCNQ3|p.R780Lfs*21|1|0.2|ENSG00000184156|chr8:132129544-132129545|-/TAGGAAATGATGAAACCATCAAC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.2490539550781	2	452.230156	902.445759	-0.23401	-0.00010583	1.4239	0.00064393	1.1899	0.00053811	452.23070493290004	45.744	1.0443	42.706	42.178	43.223	-3.0385					24	19	2	0	0	0	0.028476	1	2303	2303		19.36	3.7182	1	20372			739	8132	512	513	1111	1111					-0.009365665216591879
AGDPPCLTYL	10	Unmodified	_AGDPPCLTYL_					0	0	0		ENSG00000181333|ENST00000315765|HEPHL1;HEPHL1|p.A683Gfs*12|1|0.45|ENSG00000181333|chr11:94086157-94086164|CCACAACA/-|frameshift_variant;HEPHL1|p.N891Kfs*8|1|0.16|ENSG00000181333|chr11:94103007-94103008|-/G|frameshift_variant	ENSG00000181333|ENST00000315765|HEPHL1	ENSG00000181333|ENST00000315765|HEPHL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.3212890625	2	525.252243	1048.48993	0.24463	0.00012849	-4.1005	-0.0021538	-3.8559	-0.0020253	525.2500392553956	110.59	0.73649	108.99	108.6	109.33	-1.6011					22	13	2	0	0	0	0.026688	1	10158	10158		49.442	5.3247	1	23478			740	7926	513	514	1112	1112					-0.03237298419708168
AGDPPCLTYL	10	Unmodified	_AGDPPCLTYL_					0	0	0		ENSG00000181333|ENST00000315765|HEPHL1;HEPHL1|p.A683Gfs*12|1|0.45|ENSG00000181333|chr11:94086157-94086164|CCACAACA/-|frameshift_variant;HEPHL1|p.N891Kfs*8|1|0.16|ENSG00000181333|chr11:94103007-94103008|-/G|frameshift_variant	ENSG00000181333|ENST00000315765|HEPHL1	ENSG00000181333|ENST00000315765|HEPHL1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	525.252243	1048.48993	-0.46167	-0.0002425	-4.1123	-0.00216	-4.574	-0.0024025	525.250205226033	110.07	0.83952	108.92	108.51	109.35	-1.1444	-0.038423	9.6944E-05	NaN	49.442	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10608			741	7926	513	514							-0.03237298419708168
AGDRIITAT	9	Unmodified	_AGDRIITAT_					0	0	0			REV__ENST00000381346.8_1_14:68144270-68144630:-|nuORF	REV__ENST00000381346.8_1_14:68144270-68144630:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	459.2574157714844	2	459.256174	916.497795	-0.14326	-6.5794E-05	-0.61921	-0.00028438	-0.76248	-0.00035017	459.25583040570086	47.417	1.3179	44.311	44.032	45.35	-3.1055					78	25	4	0	0	0	0.24951	1	2584	2584		68.787	1.2932	1	1474600	+		742	25196	514	515	1113	1113					0.03620596892096728
AGDVCSFESL	10	Carbamidomethyl (C)	_AGDVC(Carbamidomethyl (C))SFESL_	AGDVC(1)SFESL		AGDVC(79)SFESL		0	1	0		ENST00000264039.6_1_2:241407346-241407475:+|nuORF	ENST00000264039.6_1_2:241407346-241407475:+|nuORF	ENST00000264039.6_1_2:241407346-241407475:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	542.7376708984375	2	542.734414	1083.45428	-0.6814	-0.00036982	3.8052	0.0020652	3.1238	0.0016954	542.7363358130716	53.329	0.60508	53.329	53.087	53.692	0					30	13	3	0	0	0	0.31157	1	4231	4231		79.451	20.669	1	1754600			743	9926	515	516	1114	1114	101				-0.08411380667371304
AGEEHLPA	8	Unmodified	_AGEEHLPA_					0	0	0			REV__ENST00000532150.1_1_11:75917479-75921696:-|nuORF	REV__ENST00000532150.1_1_11:75917479-75921696:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	412.2074279785156	2	412.200867	822.387182	0.51002	0.00021023	-0.22093	-9.1068E-05	0.28909	0.00011916	412.20055366708215	51.645	1.2331	51.645	51.332	52.566	0					81	28	4	0	0	0	0.69415	2	3985	3985;4025		44.531	2.1349	1	10026000	+		744	27230	516	517	1115;1116	1115					-0.031116230961515612
AGEFLRRPDK	10	Unmodified	_AGEFLRRPDK_					0	0	0			REV__ENST00000460761.1_1_19:54705052-54705521:+|nuORF	REV__ENST00000460761.1_1_19:54705052-54705521:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	594.828369140625	2	594.827829	1187.64111	-1.0911	-0.00064901	1.3043	0.00077586	0.21326	0.00012685	594.8287093087835	76.656	1.4596	74.802	74.518	75.977	-1.854					101	27	5	0	0	0	0.59317	1	6367	6367		42.864	0	1	1003200	+		745	26090	517	518	1117	1117					0.05479024003170707
AGEHLLLG	8	Unmodified	_AGEHLLLG_					0	0	0		ENST00000372920.1_1_20:43030124-43058302:+|nuORF;nc|ENSG00000101076|P41235-4|HNF4A;HNF4A|p.Q327Hfs*25|1|0.8|ENSG00000101076|chr20:44424106-44424106|G/-|frameshift_variant;nc|ENSG00000101076|P41235-7|HNF4A;nc|ENSG00000164749|Q14541|HNF4G;nc|ENSG00000101076|P41235-3|HNF4A;nc|ENSG00000101076|P41235-6|HNF4A;nc|ENSG00000164749|Q14541-2|HNF4G;ENSG00000101076|ENST00000316673|HNF4A;ENSG00000164749|ENST00000396423|HNF4G;nc|ENSG00000101076|P41235-2|HNF4A;nc|ENSG00000101076|P41235|HNF4A	ENST00000372920.1_1_20:43030124-43058302:+|nuORF	ENST00000372920.1_1_20:43030124-43058302:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	405.230712890625	2	405.229428	808.444303	3.1367	0.0012711	-0.41357	-0.00016759	2.7231	0.0011035	405.22911953355566	79.452	2.4118	79.452	79.16	81.572	0					133	58	3	0	0	0	0.49583	3	8081	8081;8111;8141		77.944	20.491	1	10443000			746	10990	518	519	1118;1119;1120	1118					0.03241844180251974
AGEHVILGI	9	Unmodified	_AGEHVILGI_					0	0	0			REV__nc|ENSG00000183654|A6NNE9-2|MARCHF11	REV__nc|ENSG00000183654|A6NNE9-2|MARCHF11	MULTI-MSMS	OvCa99_classI_Rep5	1	454.7651062011719	2	454.763635	907.512717	2.0727	0.00094261	0.20451	9.3005E-05	2.2773	0.0010356	454.7636468337306	79.475	2.6153	79.475	79.16	81.776	0					183	63	4	0	0	0	0.25214	1	8134	8134		68.485	2.6815	1	26941000	+		747	22374	519	520	1121	1121					0.055260887600866226
AGEKEPDP	8	Unmodified	_AGEKEPDP_					0	0	0		ENST00000459982.5_1_5:131821868-131826375:-|nuORF;ENST00000472045.1_1_5:131822508-131823888:-|nuORF;IRF1|p.M170Rfs*35|1|0.36|ENSG00000125347|chr5:132486582-132486592|CAAGTCCTGCA/-|frameshift_variant;ENSG00000125347|ENST00000245414|IRF1	ENST00000459982.5_1_5:131821868-131826375:-|nuORF	ENST00000459982.5_1_5:131821868-131826375:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	421.69842529296875	2	421.698158	841.381762	-0.85142	-0.00035904	2.3642	0.00099698	1.5128	0.00063794	421.6990610201952	44.069	0.4842	44.069	43.866	44.35	0					19	10	2	0	0	0	0.72896	1	2965	2965		37.159	1.9584	1	354530			748	12143	520	521	1122	1122					-0.0452734667861705
AGFIEQLIKI	10	Unmodified	_AGFIEQLIKI_					0	0	0		ENST00000009041.11_1_7:38268451-38269655:+|nuORF	ENST00000009041.11_1_7:38268451-38269655:+|nuORF	ENST00000009041.11_1_7:38268451-38269655:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	566.3424072265625	2	566.342249	1130.66995	2.3077	0.001307	-2.1855	-0.0012378	0.12219	6.92E-05	566.34053781712	95.574	0.8829	95.574	95.37	96.253	0					44	20	3	0	0	0	0.072307	1	10434	10434		120.87	13.861	1	2435600			749	9625	521	522	1123	1123					0.1098374857961062
AGGDGGSL	8	Unmodified	_AGGDGGSL_					0	0	0		nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	MULTI-SECPEP	OvCa99_classI_Rep5	1	633.0259399414062	1	633.283845	632.276569	1.4046	0.00088948	3.7979	0.0024051	5.2024	0.0032946	633.2861387421791	142.72	1.0798	142.72	142.29	143.37	0					36	21	2	0	0	0	0.028476	1	16635	16635		25.45	4.9683	1	138430			750	15234	522	523	1124	1124					-0.054278430843737624
AGGGAPAI	8	Unmodified	_AGGGAPAI_					0	0	0		L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|173|3|sense;L1PA3_dup1152|chr2:117623254-117629278:+|1.1606400945596698|0.0841542146032081|3.79|394.0|3|1|sense;L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|5|1|sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.448906025747238|0.1317034148076854|3.46|417.0|144|3|sense;L1PA2_dup23|chr1:43114528-43120516:-|1.3533449411662286|0.3152228216366226|2.1|404.0|35|2|sense;L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|102|3|sense	L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|173|3|sense	L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|173|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	614.3095703125	1	613.330402	612.323125	1.925	0.0011807	1.2532	0.0007686	3.1782	0.0019493	613.3307029553166	128.15	0.79482	128.15	127.81	128.61	0					29	16	2	0	0	0	0.028476	1	14804	14804		16.705	0	1	84103			751	14530	523	524	1125	1125					0.0014564153756282394
AGGHTHSH	8	Unmodified	_AGGHTHSH_					0	0	0		ENSG00000125285|ENST00000376945|SOX21	ENSG00000125285|ENST00000376945|SOX21	ENSG00000125285|ENST00000376945|SOX21	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.928955078125	2	402.180801	802.347048	0.81237	0.00032672	2.9813	0.001199	3.7937	0.0015257	402.1819200631495	52.179	0.68704	52.179	51.747	52.434	0					26	15	3	0	0	0	0.028476	1	4024	4024		13.775	9.7901	1	425970			752	3696	524	525	1126	1126					-0.06203124976048002
AGGLRKQC	8	Unmodified	_AGGLRKQC_					0	0	0			REV__ENST00000487567.2_2_1:236686703-236687021:-|nuORF	REV__ENST00000487567.2_2_1:236686703-236687021:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	417.1883544921875	2	416.726529	831.438506	1.3115	0.00054652	0.71896	0.00029961	2.0304	0.00084613	416.7267378967546	74.376	0.7852	74.376	74.095	74.88	0					34	19	2	0	0	0	0.028476	1	7316	7316		13.775	6.582	1	1324600	+		753	26604	525	526	1127	1127					0.01604422396917471
AGGRGQVLL	9	Unmodified	_AGGRGQVLL_					0	0	0		ENSG00000204128|ENST00000373640|C2orf72	ENSG00000204128|ENST00000373640|C2orf72	ENSG00000204128|ENST00000373640|C2orf72	MULTI-SECPEP	OvCa99_classI_Rep5	1	436.2532958984375	2	435.761426	869.5083	-0.079632	-3.47E-05	0.32725	0.0001426	0.24761	0.0001079	435.7614023402389	37.371	0.78278	37.371	37.069	37.851	0					30	16	3	0	0	0	0.027456	1	2005	2005		30.504	17.544	1	213570			754	8949	526	527	1128	1128					0.0683262433717573
AGHANKHSVSG	11	Unmodified	_AGHANKHSVSG_					0	0	0		nc|ENSG00000071909|Q8WXR4-3|MYO3B;nc|ENSG00000071909|Q8WXR4-2|MYO3B;nc|ENSG00000071909|Q8WXR4-4|MYO3B;ENSG00000071909|ENST00000408978|MYO3B;nc|ENSG00000071909|Q8WXR4-7|MYO3B	nc|ENSG00000071909|Q8WXR4-3|MYO3B	nc|ENSG00000071909|Q8WXR4-3|MYO3B	MULTI-MSMS	OvCa9_classI_Rep2	2	532.7632446289062	2	532.765229	1063.5159	-2.1705	-0.0011564	-1.4354	-0.00076471	-3.6059	-0.0019211	532.7642907529109	117.77	2.6251	117.62	115.46	118.08	-0.14755					92	52	3	0	0	0	0.63561	1	11268	11268		41.427	2.1738	1	115690			755	1458	527	528	1129	1129					-0.013312681331854037
AGIASLTDLL	10	Unmodified	_AGIASLTDLL_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;ENSG00000164190|ENST00000282516|NIPBL;nc|ENSG00000164190|Q6KC79-3|NIPBL;NIPBL|p.D1127Vfs*46|1|0.16|ENSG00000164190|chr5:37000448-37000448|A/-|frameshift_variant	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MSMS	OvCa99_classI_Rep5	1	487.2845458984375	2	487.281857	972.549162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	156.01	1	156.01	155.51	156.51	0								0	0	0	0.049332	1	18281	18281		108.09	14.892	1				756	6432	528	529	1130	1130					0.06178920866148019
AGICLLIIIQL	11	Unmodified	_AGICLLIIIQL_					0	0	0		nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2	nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2	nc|ENSG00000065665|Q9H9S3-3|SEC61A2	MULTI-MSMS	OvCa99_classI_Rep5	1	585.373291015625	2	585.369952	1168.72535	1.4677	0.00085914	3.7415	0.0021902	5.2092	0.0030493	585.3720297150055	81.811	0.68795	81.811	81.493	82.181	0					34	16	3	0	0	0	0.52685	1	8449	8449		51.335	1.3109	1	898500			757	1335;12773;14885	529	530	1131	1131					0.147738387757272
AGIFLLLT	8	Unmodified	_AGIFLLLT_					0	0	0		nc|ENSG00000164168|Q9NVA4-2|TMEM184C;ENSG00000164168|ENST00000296582|TMEM184C	nc|ENSG00000164168|Q9NVA4-2|TMEM184C	nc|ENSG00000164168|Q9NVA4-2|TMEM184C	MULTI-SECPEP	OvCa99_classI_Rep5	1	425.2336120605469	2	424.268022	846.521491	-0.55367	-0.00023491	-3.8611	-0.0016382	-4.4148	-0.0018731	424.2663596013554	50.275	0.43439	50.275	50.031	50.465	0					14	9	2	0	0	0	0.028476	1	3776	3776		17.365	0	1	134750			758	6423	530	531	1132	1132					0.09209062396553236
AGIFYAFAIKI	11	Unmodified	_AGIFYAFAIKI_					0	0	0			REV__tr|A0A7D6ZWL9|A0A7D6ZWL9_9CLOTATPsynthasesubunitIOS=ClostridiumintestinaleOX=36845GN=HZF06_19520PE=4SV=1	REV__tr|A0A7D6ZWL9|A0A7D6ZWL9_9CLOTATPsynthasesubunitIOS=ClostridiumintestinaleOX=36845GN=HZF06_19520PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	405.2386779785156	3	405.237504	1212.69068	1.1781	0.00047739	1.5029	0.00060905	2.681	0.0010864	405.2380980368008	45.582	1.7446	42.872	42.448	44.192	-2.7097					104	34	5	0	0	0	0.56391	1	2704	2704		47.96	4.541	1	1021000	+		759	32295	531	532	1133	1133					0.09284338959241722
AGIIFYKAVAF	11	Unmodified	_AGIIFYKAVAF_					0	0	0			REV__tr|A0A553SLX3|A0A553SLX3_NIACIPermeaseOS=NialliacirculansOX=1397GN=CEQ21_21445PE=3SV=1	REV__tr|A0A553SLX3|A0A553SLX3_NIACIPermeaseOS=NialliacirculansOX=1397GN=CEQ21_21445PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	400.5661926269531	3	400.56562	1198.67503	0.8768	0.00035122	2.1452	0.00085931	3.022	0.0012105	400.56640806510717	35.177	0.47196	35.177	34.957	35.429	0					20	9	4	0	0	0	0.66495	1	1760	1760		38.754	0.039523	1	218730	+		760	30275	532	533	1134	1134					0.08364052442220782
AGILGLGINY	10	Unmodified	_AGILGLGINY_					0	0	0		tr|A0A7D6W2S1|A0A7D6W2S1_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07155PE=3SV=1	tr|A0A7D6W2S1|A0A7D6W2S1_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07155PE=3SV=1	tr|A0A7D6W2S1|A0A7D6W2S1_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07155PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.62750244140625	2	495.784567	989.554582	-0.64246	-0.00031852	0.12864	6.3777E-05	-0.51382	-0.00025475	495.78273880089966	29.183	0.25011	29.183	29.037	29.288	0					7	4	2	0	0	0	0.027021	1	1026	1026		29.15	3.6994	1	13195			761	35436	533	534	1135	1135					0.059386444485994616
AGILGLGINY	10	Unmodified	_AGILGLGINY_					0	0	0		tr|A0A7D6W2S1|A0A7D6W2S1_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07155PE=3SV=1	tr|A0A7D6W2S1|A0A7D6W2S1_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07155PE=3SV=1	tr|A0A7D6W2S1|A0A7D6W2S1_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07155PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	495.784567	989.554582	0.20378	0.00010103	-0.2157	-0.00010694	-0.011916	-5.908E-06	495.78504806226573	31.622	0.29559	28.912	28.789	29.085	-2.7097	-0.1353	-0.00017582	NaN	29.15	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3314.3			762	35436	533	534							0.059386444485994616
AGILHALI	8	Unmodified	_AGILHALI_					0	0	0		ENSG00000233412|ENST00000641450|OR5H15	ENSG00000233412|ENST00000641450|OR5H15	ENSG00000233412|ENST00000641450|OR5H15	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.2183837890625	2	404.257988	806.501424	-1.2092	-0.00048883	-0.28052	-0.0001134	-1.4897	-0.00060223	404.2578360334661	104.18	0.34163	104.18	103.98	104.32	0					11	7	2	0	0	0	0.028476	1	11672	11672		80.997	37.371	1	160940			763	9294	534	535	1136	1136					0.09043311456605352
AGILMPIILE	10	Unmodified	_AGILMPIILE_					0	0	0			REV__tr|A0A553ST71|A0A553ST71_NIACIOPTfamilyoligopeptidetransporterOS=NialliacirculansOX=1397GN=CEQ21_04365PE=4SV=1	REV__tr|A0A553ST71|A0A553ST71_NIACIOPTfamilyoligopeptidetransporterOS=NialliacirculansOX=1397GN=CEQ21_04365PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.3067016601562	2	535.319928	1068.6253	0.075464	4.0397E-05	2.1123	0.0011308	2.1878	0.0011712	535.3210437214042	100.66	1.6286	99.055	98.659	100.29	-1.6053					48	31	2	0	0	0	0.026612	1	6956	6956		65.803	23.407	1	184450	+		764	30923	535	536	1137	1137					0.09373601441939172
AGILMPIILE	10	Unmodified	_AGILMPIILE_					0	0	0			REV__tr|A0A553ST71|A0A553ST71_NIACIOPTfamilyoligopeptidetransporterOS=NialliacirculansOX=1397GN=CEQ21_04365PE=4SV=1	REV__tr|A0A553ST71|A0A553ST71_NIACIOPTfamilyoligopeptidetransporterOS=NialliacirculansOX=1397GN=CEQ21_04365PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	535.319928	1068.6253	2.6798	0.0014345	3.6449	0.0019512	6.3246	0.0033857	535.3217619089141	98.946	0.59707	98.946	98.638	99.236	0	-0.041909	0.00034081	NaN	65.803	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	751300	+		765	30923	535	536							0.09373601441939172
AGIPGFLGL	9	Unmodified	_AGIPGFLGL_					0	0	0		ENSG00000081052|ENST00000396625|COL4A4	ENSG00000081052|ENST00000396625|COL4A4	ENSG00000081052|ENST00000396625|COL4A4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	423.72802734375	2	422.749996	843.485439	-1.1267	-0.00047632	-2.7997	-0.0011836	-3.9264	-0.0016599	422.74828950428537	54.394	0.9215	51.147	50.774	51.695	-3.2474					31	17	3	0	0	0	0.027462	1	3399	3399		39.021	0	1	23837			766	1652	536	537	1138	1138					0.05743605219709025
AGIPWELK	8	Unmodified	_AGIPWELK_					0	0	0		ENSG00000100412|ENST00000216254|ACO2;ENST00000478010.1_1_22:41904038-41912046:+|nuORF	ENSG00000100412|ENST00000216254|ACO2	ENSG00000100412|ENST00000216254|ACO2	MULTI-MSMS	OvCa99_classI_Rep5	1	457.26007080078125	2	457.260728	912.506903	-0.073153	-3.345E-05	-0.39582	-0.00018099	-0.46897	-0.00021444	457.26059831172034	47.315	0.9102	47.315	47.03	47.941	0					37	20	2	0	0	0	0.65582	1	3414	3414		52.299	4.3396	1	1828200			767	2064	537	538	1139	1139					0.047149902484079576
AGISAKIQS	9	Unmodified	_AGISAKIQS_					0	0	0		ENST00000519207.5_1_8:19218811-19221604:+|nuORF	ENST00000519207.5_1_8:19218811-19221604:+|nuORF	ENST00000519207.5_1_8:19218811-19221604:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	437.7533264160156	2	437.753267	873.491981	-0.17219	-7.5375E-05	0.28315	0.00012395	0.11097	4.8577E-05	437.75330032578216	34.699	1.0795	34.699	34.304	35.384	0					53	22	4	0	0	0	0.22621	1	1669	1669		71.877	7.6702	1	1377500			768	13083	538	539	1140	1140					0.050174983804254225
AGKCELSPLLL	11	Unmodified	_AGKCELSPLLL_					0	0	0			REV__chr20:32706760-32719573|156|10.9|0.6|4.18|-|2|TE_info:AluSq2,AluSq2_dup58034,Alu,SINE,donor,+,32719573,32719676|COMMD7,None|1	REV__chr20:32706760-32719573|156|10.9|0.6|4.18|-|2|TE_info:AluSq2,AluSq2_dup58034,Alu,SINE,donor,+,32719573,32719676|COMMD7,None|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	572.3273315429688	2	572.325742	1142.63693	-0.31821	-0.00018212	3.2477	0.0018587	2.9295	0.0016766	572.3274499626856	39.245	1.8689	36.319	35.948	37.817	-2.9264					87	34	4	0	0	0	0.68399	1	1624	1624		35.152	0.97948	1	787270	+		769	16015	539	540	1141	1141					0.07131798465275097
AGKDQRGK	8	Unmodified	_AGKDQRGK_					0	0	0		ITGA8|p.V911Efs*13|1|0.04|ENSG00000077943|chr10:15558108-15558109|-/TT|frameshift_variant;ENSG00000077943|ENST00000378076|ITGA8	ITGA8|p.V911Efs*13|1|0.04|ENSG00000077943|chr10:15558108-15558109|-/TT|frameshift_variant	ITGA8|p.V911Efs*13|1|0.04|ENSG00000077943|chr10:15558108-15558109|-/TT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	429.89202880859375	2	430.240858	858.467164	-0.21517	-9.2576E-05	-3.4412	-0.0014805	-3.6564	-0.0015731	430.2397027687435	42.228	1.1318	39.248	38.748	39.88	-2.9804					28	21	2	0	0	0	0.028476	1	1887	1887		24.203	1.1603	1	53853			770	1580	540	541	1142	1142					0.032268632977206835
AGKEGKTGPIG	11	Unmodified	_AGKEGKTGPIG_					0	0	0			REV__SGPL1-COL13A1|10|fusion	REV__SGPL1-COL13A1|10|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	507.78509521484375	2	507.782556	1013.55056	1.702	0.00086427	2.4391	0.0012385	4.1411	0.0021028	507.7837327408491	28.178	0.84576	25.468	25.294	26.14	-2.7097					29	17	2	0	0	0	0.68399	1	562	562		35.152	3.1972	1	91619	+		771	29081	541	542	1143	1143					0.044325549548943854
AGKGQKPR	8	Unmodified	_AGKGQKPR_					0	0	0		nc|ENSG00000168539|P11229-2|CHRM1;ENSG00000168539|ENST00000306960|CHRM1	nc|ENSG00000168539|P11229-2|CHRM1	nc|ENSG00000168539|P11229-2|CHRM1	MULTI-MSMS	OvCa99_classI_Rep5	1	421.2525329589844	2	421.253769	840.492984	0.27114	0.00011422	-0.3865	-0.00016282	-0.11537	-4.8599E-05	421.2535633165654	45.015	0.49407	45.015	44.795	45.289	0					21	10	3	0	0	0	0.73288	1	3091	3091		35.201	3.2459	1	333960			772	6919	542	543	1144	1144					0.06635757539982023
AGKLFPYKLI	10	Unmodified	_AGKLFPYKLI_					0	0	0			REV__tr|A0A553SNF8|A0A553SNF8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24305PE=4SV=1	REV__tr|A0A553SNF8|A0A553SNF8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24305PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.350341796875	2	575.35516	1148.69577	-5.9937	-0.0034485	-1.2528	-0.00072081	-7.2465	-0.0041693	575.3543564636343	157.84	0.77951	156.29	156.09	156.87	-1.545					44	22	3	0	0	0	0.7759	1	15607	15607		21.96	1.013	1	71149	+		773	30418	543	544	1145	1145					0.1273664282189202
AGKRFKQAHSI	11	Unmodified	_AGKRFKQAHSI_					0	0	0			REV__nc|ENSG00000105048|P13805-2|TNNT1	REV__nc|ENSG00000105048|P13805-2|TNNT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.9059143066406	3	414.907039	1241.69929	1.0957	0.00045463	-4.3777	-0.0018164	-3.282	-0.0013617	414.9051689011235	35.699	1.347	32.85	32.54	33.887	-2.849					68	26	4	0	0	0	0.70032	1	1172	1172		29.551	1.9068	1	304470	+		774	17697	544	545	1146	1146					0.08810705648465955
AGKRQGIP	8	Unmodified	_AGKRQGIP_					0	0	0			REV__ENST00000579391.1_1_17:7127436-7127876:+|nuORF	REV__ENST00000579391.1_1_17:7127436-7127876:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	413.49029541015625	2	413.748319	825.482085	0.30183	0.00012488	-0.0040548	-1.6777E-06	0.29777	0.0001232	413.7482510628721	38.223	0.36974	38.223	38.024	38.394	0					12	7	2	0	0	0	0.028476	1	2174	2174		20.482	1.1219	1	50263	+		775	27814	545	546	1147	1147					0.06236355165719942
AGLDALMLLI	10	Oxidation (M)	_AGLDALM(Oxidation (M))LLI_		AGLDALM(1)LLI		AGLDALM(44)LLI	0	0	1			REV__tr|A0A553SUH9|A0A553SUH9_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_00075PE=3SV=1	REV__tr|A0A553SUH9|A0A553SUH9_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_00075PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3026123046875	2	523.301736	1044.58892	0.92494	0.00048402	2.5178	0.0013175	3.4427	0.0018016	523.3029320659484	30.44	0.93634	27.73	27.557	28.494	-2.7097					40	18	3	0	0	0	0.58282	1	853	853		44.117	11.304	1	187740	+		776	31081	546	547	1148	1148		688			0.06840724545213561
AGLGMGTDLLV	11	Unmodified	_AGLGMGTDLLV_					0	0	0			REV__ENSG00000128335|ENST00000358502|APOL2	REV__ENSG00000128335|ENST00000358502|APOL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7665405273438	2	523.781167	1045.54778	-0.82261	-0.00043087	3.7445	0.0019613	2.9219	0.0015305	523.7833665338939	29.397	0.2987	29.397	29.237	29.536	0					8	5	2	0	0	0	0.025681	1	1046	1046		26.693	0	1	26225	+		777	18852	547	548	1149	1149					0.026829635057310952
AGLKANRP	8	Unmodified	_AGLKANRP_					0	0	0		KCNJ15|p.F120Lfs*39|1|0.35|ENSG00000157551|chr21:38299620-38299621|-/AAGG|frameshift_variant;ENSG00000157551|ENST00000398938|KCNJ15	KCNJ15|p.F120Lfs*39|1|0.35|ENSG00000157551|chr21:38299620-38299621|-/AAGG|frameshift_variant	KCNJ15|p.F120Lfs*39|1|0.35|ENSG00000157551|chr21:38299620-38299621|-/AAGG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.7547607421875	2	413.748319	825.482085	0.50885	0.00021053	-2.7222	-0.0011263	-2.2134	-0.00091579	413.7481677349435	60.118	0.35722	60.118	59.957	60.314	0					12	8	2	0	0	0	0.028476	1	5228	5228		37.028	17.669	1	108570			778	5898	548	549	1150	1150					0.06236355165697205
AGLLQDKDLLL	11	Unmodified	_AGLLQDKDLLL_					0	0	0		ENSG00000162490|ENST00000294485|DRAXIN	ENSG00000162490|ENST00000294485|DRAXIN	ENSG00000162490|ENST00000294485|DRAXIN	MULTI-MSMS	OvCa9_classI_Rep4_	4	400.2406311035156	3	400.239573	1197.69689	2.9757	0.001191	-1.7053	-0.00068253	1.2704	0.00050844	400.2388154241701	34.481	0.90261	31.693	31.498	32.401	-2.7881					37	17	3	0	0	0	0.71321	1	1031	1031		25.126	3.4402	1	79502			779	6186	549	550	1151	1151					0.10594812400131559
AGMDSWAMGPW	11	Unmodified	_AGMDSWAMGPW_					0	0	0		ENST00000556618.1_3_15:91500699-91500907:+|nuORF	ENST00000556618.1_3_15:91500699-91500907:+|nuORF	ENST00000556618.1_3_15:91500699-91500907:+|nuORF	MSMS	OvCa9_classI_Rep2	2	604.74658203125	2	604.746802	1207.47905	NaN	NaN	NaN	NaN	NaN	NaN	NaN	161.19	1	160.96	160.46	161.46	-0.22696								0	0	0	0.19474	1	16410	16410		20.947	0.95016	1				780	13670	550	551	1152	1152					-0.11639024065607373
AGNLFQITII	10	Unmodified	_AGNLFQITII_					0	0	0		chr1:148433629-148435146|302|12.28|0.38|5.03|-|0|TE_info:MER66-int,MER66-int_dup67,ERV1,LTR,acceptor,-,148433383,148433629|None,LINC01138|1	chr1:148433629-148435146|302|12.28|0.38|5.03|-|0|TE_info:MER66-int,MER66-int_dup67,ERV1,LTR,acceptor,-,148433383,148433629|None,LINC01138|1	chr1:148433629-148435146|302|12.28|0.38|5.03|-|0|TE_info:MER66-int,MER66-int_dup67,ERV1,LTR,acceptor,-,148433383,148433629|None,LINC01138|1	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3170776367188	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.69073	1	14410	14410		31.53	4.8369	1	202430			781	240	551	552	1153	1153					0.08222889028479585
AGNLLIVL	8	Unmodified	_AGNLLIVL_					0	0	0		nc|ENSG00000262085|Q8NH06|OR1P1	nc|ENSG00000262085|Q8NH06|OR1P1	nc|ENSG00000262085|Q8NH06|OR1P1	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.6802673339844	2	406.765646	811.516739	3.2275	0.0013129	-2.3891	-0.0009718	0.83843	0.00034105	406.76544263415343	77.538	0.42102	77.538	77.293	77.714	0					13	9	2	0	0	0	0.028476	1	7805	7805		1.3276	0	1	78306			782	15365	552	553	1154	1154					0.10344178253785685
AGNLPLRILL	10	Unmodified	_AGNLPLRILL_					0	0	0		ENST00000476966.5_1_1:156383203-156383374:-|nuORF	ENST00000476966.5_1_1:156383203-156383374:-|nuORF	ENST00000476966.5_1_1:156383203-156383374:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.7825927734375	2	540.350409	1078.68626	-0.32621	-0.00017627	-0.70769	-0.0003824	-1.0339	-0.00055867	540.3502657370464	47.803	0.52098	47.803	47.595	48.116	0					25	11	3	0	0	0	0.027147	1	3475	3475		21.96	12.777	1	349270			783	12472	553	554	1155	1155					0.15006874536379655
AGPFISLF	8	Unmodified	_AGPFISLF_					0	0	0			REV__tr|A0A553SGL0|A0A553SGL0_NIACIMulti-TM2domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11070PE=4SV=1	REV__tr|A0A553SGL0|A0A553SGL0_NIACIMulti-TM2domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11070PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	425.74957275390625	2	426.236722	850.45889	-0.82719	-0.00035258	-3.5019	-0.0014926	-4.3291	-0.0018452	426.23509911563133	43.661	1.4194	40.653	40.326	41.745	-3.0074					62	27	3	0	0	0	0.028476	1	2237	2237		37.028	0	1	425710	+		784	29716	554	555	1156	1156					0.02767916328366482
AGPFLKILHD	10	Unmodified	_AGPFLKILHD_					0	0	0		tr|A0A553SRU7|A0A553SRU7_NIACIIsopentenyl-diphosphatedelta-isomeraseOS=NialliacirculansOX=1397GN=fniPE=3SV=1	tr|A0A553SRU7|A0A553SRU7_NIACIIsopentenyl-diphosphatedelta-isomeraseOS=NialliacirculansOX=1397GN=fniPE=3SV=1	tr|A0A553SRU7|A0A553SRU7_NIACIIsopentenyl-diphosphatedelta-isomeraseOS=NialliacirculansOX=1397GN=fniPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	555.823974609375	2	555.818941	1109.62333	4.315	0.0023984	1.8397	0.0010225	6.1547	0.0034209	555.8198103416565	25.114	1.0176	22.405	22.261	23.279	-2.7097					54	22	4	0	0	0	0.7759	1	239	239		21.96	1.9631	1	302060			785	34299	555	556	1157	1157					0.0729030874831551
AGPHHPPL	8	Unmodified	_AGPHHPPL_					0	0	0			REV__nc|ENSG00000099954|Q9BXF3|CECR2	REV__nc|ENSG00000099954|Q9BXF3|CECR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.5851135253906	2	413.221937	824.429321	-0.14548	-6.0115E-05	-1.3373	-0.00055259	-1.4827	-0.0006127	413.22162652163036	36.737	0.49079	36.737	36.532	37.023	0					15	10	2	0	0	0	0.028476	1	1964	1964		10.185	6.1995	1	61863	+		786	17343	556	557	1158	1158					0.010083971028848282
AGPKRRPK	8	Unmodified	_AGPKRRPK_					0	0	0			REV__FIP1L1|p.W165R|1|0.45|ENSG00000145216|chr4:53390616-53390616|T/A|missense_variant	REV__FIP1L1|p.W165R|1|0.45|ENSG00000145216|chr4:53390616-53390616|T/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.2696533203125	2	455.290685	908.566818	-0.17269	-7.8625E-05	-0.37267	-0.00016967	-0.54536	-0.0002483	455.2902358312705	41.262	0.40142	41.262	41.104	41.505	0					11	8	2	0	0	0	0.028476	1	2582	2582		25.45	0	1	49126	+		787	28135	557	558	1159	1159					0.1088772570232095
AGPLPRQPVAR	11	Unmodified	_AGPLPRQPVAR_					0	0	0			REV__ENST00000301732.9_1_16:2358503-2367727:-|nuORF	REV__ENST00000301732.9_1_16:2358503-2367727:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.28515625	2	581.346189	1160.67783	1.142	0.0006639	3.5848	0.002084	4.7268	0.0027479	581.3481037226321	115.18	0.7477	115.18	114.88	115.63	0					26	15	2	0	0	0	0.025746	1	13205	13205		25.574	0	1	84788	+		788	24251	558	559	1160	1160					0.10391320619737598
AGPMGGPLI	9	Unmodified	_AGPMGGPLI_					0	0	0			REV__tr|A0A7D6ZZ98|A0A7D6ZZ98_9CLOTDJ-1/PfpIfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05270PE=4SV=1	REV__tr|A0A7D6ZZ98|A0A7D6ZZ98_9CLOTDJ-1/PfpIfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05270PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.2392272949219	2	406.720381	811.42621	0.98235	0.00039954	-0.35668	-0.00014507	0.62568	0.00025448	406.72035639579525	41.081	0.27027	41.081	40.969	41.24	0					8	5	2	0	0	0	0.027462	1	2561	2561		21.702	1.2205	1	32249	+		789	32402	559	560	1161	1161					0.012953859338722395
AGPPKRAF	8	Unmodified	_AGPPKRAF_					0	0	0			REV__ENST00000509868.1_1_5:11508500-11903965:-|nuORF	REV__ENST00000509868.1_1_5:11508500-11903965:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	423.206787109375	2	422.245412	842.476272	-0.72425	-0.00030581	1.2328	0.00052055	0.50857	0.00021474	422.24588820261766	52.531	0.7002	49.323	49.094	49.795	-3.208					20	13	2	0	0	0	0.028476	1	3182	3182		20.482	0	1	45984	+		790	16254	560	561	1162	1162					0.04873256654036595
AGPRVLVR	8	Unmodified	_AGPRVLVR_					0	0	0			REV__ENSG00000170837|ENST00000304411|GPR27	REV__ENSG00000170837|ENST00000304411|GPR27	MULTI-SECPEP	OvCa9_classI_Rep4_	4	435.2598571777344	2	434.279786	866.54502	0.022275	9.6734E-06	0.16909	7.3432E-05	0.19136	8.3105E-05	434.279660842794	52.835	0.69682	49.627	49.298	49.995	-3.208					21	13	2	0	0	0	0.028476	1	3225	3225		18.324	13.643	1	38438	+		791	21566	561	562	1163	1163					0.10640920953744626
AGPRVLVR	8	Unmodified	_AGPRVLVR_					0	0	0			REV__ENSG00000170837|ENST00000304411|GPR27	REV__ENSG00000170837|ENST00000304411|GPR27	MULTI-MATCH	OvCa99_classI_Rep5	1		2	434.279786	866.54502	-0.30361	-0.00013185	0.11916	5.1749E-05	-0.18445	-8.0102E-05	434.2797189594933	49.878	0.43441	49.878	49.679	50.114	0	0.14671	-0.00017179	NaN	12.207	23	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	533460	+		792	21566	561	562							0.10640920953744626
AGPRVLVR	8	Unmodified	_AGPRVLVR_					0	0	0			REV__ENSG00000170837|ENST00000304411|GPR27	REV__ENSG00000170837|ENST00000304411|GPR27	MULTI-MATCH	OvCa9_classI_Rep2	2		2	434.279786	866.54502	-1.0372	-0.00045042	0.75463	0.00032772	-0.28255	-0.0001227	434.27999140796805	52.501	0.74101	49.688	49.196	49.937	-2.8129	-0.043164	0.00038015	NaN	12.207	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15032	+		793	21566	561	562							0.10640920953744626
AGPSPAPPTP	10	Unmodified	_AGPSPAPPTP_					0	0	0		MCOLN1|p.L396*|1|0.4|ENSG00000090674|chr19:7529151-7529166|GCTGGTGTGGGTGGGC/-|frameshift_variant;ENSG00000090674|ENST00000264079|MCOLN1;ENST00000596390.1_1_19:7587636-7590109:+|nuORF;ENST00000394321.9_1_19:7587636-7592563:+|nuORF	MCOLN1|p.L396*|1|0.4|ENSG00000090674|chr19:7529151-7529166|GCTGGTGTGGGTGGGC/-|frameshift_variant	MCOLN1|p.L396*|1|0.4|ENSG00000090674|chr19:7529151-7529166|GCTGGTGTGGGTGGGC/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	446.2294616699219	2	446.232168	890.449782	-6.2674	-0.0027967	0.49877	0.00022257	-5.7687	-0.0025742	446.23242416021094	164.23	0.17093	162.59	162.48	162.65	-1.6405					8	4	3	0	0	0	0.72319	1	16229	16229		27.882	4.8398	1	205690			794	1845	562	563	1164	1164					0.0001752297204120623
AGQLQNQLK	9	Unmodified	_AGQLQNQLK_					0	0	0			REV__ENST00000591475.5_1_18:61064221-61089576:-|nuORF	REV__ENST00000591475.5_1_18:61064221-61089576:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.3371887207031	2	500.282723	998.550893	-0.53753	-0.00026892	0.70054	0.00035047	0.16301	8.1549E-05	500.28292401820096	35.267	0.46792	35.267	35.052	35.52	0					22	9	4	0	0	0	0.027462	1	1793	1793		34.173	11.13	1	242120	+		795	18449	563	564	1165	1165					0.05155974674744357
AGQNLLQKL	9	Unmodified	_AGQNLLQKL_					0	0	0			REV__ENST00000443120.5_1_2:97505679-97506290:-|nuORF	REV__ENST00000443120.5_1_2:97505679-97506290:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	492.79547119140625	2	492.795466	983.57638	-0.61364	-0.0003024	0.50992	0.00025129	-0.10372	-5.1115E-05	492.7955881517548	74.379	1.8789	71.969	71.499	73.378	-2.4106					135	37	6	0	0	0	0.21395	1	3704	3704		73.975	2.5968	1	461870	+		796	20810	564	565	1166	1166					0.08393449197183145
AGRLAARPG	9	Unmodified	_AGRLAARPG_					0	0	0		ENSG00000167157|ENST00000372469|PRRX2;PRRX2-PPP2R4|2|fusion;PRRX2-PPP2R4|1|fusion;PRRX2-PPP2R4|3|fusion	ENSG00000167157|ENST00000372469|PRRX2;PRRX2-PPP2R4|2|fusion	PRRX2-PPP2R4|2|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	434.7593688964844	2	434.759218	867.503883	-1.3377	-0.00058158	1.4594	0.00063449	0.12169	5.2907E-05	434.7597358333452	139.11	1.8707	138.05	137.63	139.51	-1.0595					91	37	4	0	0	0	0.65476	1	11481	11481		25.45	4.9683	1	610970			797	6762;15526	565	566	1167	1167					0.06483159914284897
AGRLFPVLV	9	Unmodified	_AGRLFPVLV_					0	0	0		ENST00000532577.5_1_11:9482538-9494227:+|nuORF	ENST00000532577.5_1_11:9482538-9494227:+|nuORF	ENST00000532577.5_1_11:9482538-9494227:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	486.3050842285156	2	486.30547	970.596387	0.78572	0.0003821	-1.2488	-0.0006073	-0.46308	-0.0002252	486.30477333878326	121.54	2.2543	120.51	120.01	122.27	-1.0286					108	42	4	0	0	0	0.59983	1	9366	9366		31.955	3.7006	1	892460			798	13326	566	567	1168	1168					0.10991244927788557
AGRRVRPAPL	10	Unmodified	_AGRRVRPAPL_					0	0	0		ENST00000281961.2_1_2:39893203-39931290:+|nuORF	ENST00000281961.2_1_2:39893203-39931290:+|nuORF	ENST00000281961.2_1_2:39893203-39931290:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	546.8399047851562	2	546.841074	1091.66759	-4.8246	-0.0026383	3.4883	0.0019075	-1.3363	-0.00073075	546.8429110027589	158.57	1.287	158.34	158.06	159.35	-0.22697					77	26	5	0	0	0	0.64063	1	16113	16113		37.159	3.6435	1	487190			799	10052	567	568	1169	1169					0.12542757685173456
AGRVINEP	8	Unmodified	_AGRVINEP_					0	0	0		ENSG00000205667|ENST00000381130|ARSH	ENSG00000205667|ENST00000381130|ARSH	ENSG00000205667|ENST00000381130|ARSH	MULTI-SECPEP	OvCa99_classI_Rep5	1	428.2185363769531	2	428.237784	854.461016	-0.61821	-0.00026474	-0.12566	-5.3811E-05	-0.74387	-0.00031855	428.2375505402492	42.012	0.52091	42.012	41.809	42.329	0					22	11	3	0	0	0	0.028476	1	2670	2670		24.203	0	1	258220			800	9079	568	569	1170	1170					0.027963450661786737
AGSFLPNFFTL	11	Unmodified	_AGSFLPNFFTL_					0	0	0			REV__ENSG00000119720|ENST00000354366|NRDE2	REV__ENSG00000119720|ENST00000354366|NRDE2	MULTI-MSMS	OvCa9_classI_Rep4_	4	607.3150634765625	2	607.316232	1212.61791	-1.2203	-0.00074109	-2.3325	-0.0014166	-3.5527	-0.0021576	607.314776519483	107.39	1.3422	105.51	105.17	106.51	-1.8785					88	26	5	0	0	0	0.54737	1	9837	9837		32.751	0	1	1457500	+		801	18464	569	570	1171	1171					0.020105851658399843
AGSKTVAVH	9	Unmodified	_AGSKTVAVH_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OvCa9_classI_Rep4_	4	435.2456970214844	2	435.245609	868.476666	-0.39612	-0.00017241	0.423	0.00018411	0.026888	1.1703E-05	435.24565436424297	41.289	1.0922	38.309	38.075	39.167	-2.9804					55	20	4	0	0	0	0.38529	1	1844	1844		53.351	3.9099	1	482080			802	5793;36288	570	571	1172	1172					0.037166315832337204
AGSLEARL	8	Unmodified	_AGSLEARL_					0	0	0		YY1AP1-ARHGEF2|2|fusion;YY1AP1-ARHGEF2|3|fusion;YY1AP1-ARHGEF2|1|fusion;YY1AP1-ARHGEF2|14|fusion;YY1AP1-ARHGEF2|13|fusion;YY1AP1-ARHGEF2|8|fusion;YY1AP1-ARHGEF2|7|fusion;YY1AP1-ARHGEF2|16|fusion;YY1AP1-ARHGEF2|15|fusion;YY1AP1-ARHGEF2|4|fusion;YY1AP1-ARHGEF2|6|fusion;YY1AP1-ARHGEF2|5|fusion;YY1AP1-ARHGEF2|12|fusion;YY1AP1-ARHGEF2|11|fusion;YY1AP1-ARHGEF2|10|fusion;YY1AP1-ARHGEF2|9|fusion;ENSG00000116584|ENST00000361247|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;nc|ENSG00000116584|Q92974-3|ARHGEF2	YY1AP1-ARHGEF2|2|fusion	YY1AP1-ARHGEF2|2|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	408.7315673828125	2	408.732335	815.450116	0.14678	5.9995E-05	-0.17873	-7.3052E-05	-0.031945	-1.3057E-05	408.7321323707192	50.92	1.2115	47.746	47.464	48.676	-3.1734					65	23	4	0	0	0	0.64026	1	2969	2969		55.504	2.1528	1	717180			803	36311	571	572	1173	1173					0.03500942691891851
AGSNSSRGSS	10	Unmodified	_AGSNSSRGSS_					0	0	0		ENSG00000154134|ENST00000397801|ROBO3;ROBO3|p.T1343M|1|0.37|ENSG00000154134|chr11:124880487-124880487|C/T|missense_variant	ENSG00000154134|ENST00000397801|ROBO3	ENSG00000154134|ENST00000397801|ROBO3	MULTI-SECPEP	OvCa99_classI_Rep5	1	454.2366027832031	2	455.20467	908.394786	-0.5379	-0.00024485	1.9859	0.00090398	1.448	0.00065912	455.2056345354609	50.448	0.52863	50.448	50.201	50.73	0					23	11	3	0	0	0	0.026931	1	3833	3833		17.468	0	1	174760			804	5713	572	573	1174	1174					-0.06307515566504662
AGSTGTITT	9	Unmodified	_AGSTGTITT_					0	0	0		ENST00000531236.1_1_11:71192815-71195619:+|nuORF	ENST00000531236.1_1_11:71192815-71195619:+|nuORF	ENST00000531236.1_1_11:71192815-71195619:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.7515563964844	2	404.705983	807.397412	1.1299	0.00045728	-0.93525	-0.0003785	0.19466	7.878E-05	404.70593607710475	43.123	1.7338	43.123	42.839	44.573	0					94	39	4	0	0	0	0.027462	1	2789	2789		20.947	0	1	8967400			805	13303	573	574	1175	1175					-0.013990601615773812
AGTFTEKNIN	10	Unmodified	_AGTFTEKNIN_					0	0	0			REV__ENSG00000105708|ENST00000344099|ZNF14	REV__ENSG00000105708|ENST00000344099|ZNF14	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.3236694335938	2	547.77747	1093.54039	-0.20203	-0.00011067	-1.6912	-0.00092637	-1.8932	-0.001037	548.2803526778789	56.672	0.76196	56.672	56.459	57.221	0					30	17	3	0	0	0	0.026606	1	4763	4763		71.877	20.685	1	360420	+		806	17752	574	575	1176	1176					-0.0026405277030789875
AGTFTEKNIN	10	Unmodified	_AGTFTEKNIN_					0	0	0			REV__ENSG00000105708|ENST00000344099|ZNF14	REV__ENSG00000105708|ENST00000344099|ZNF14	MULTI-MATCH	OvCa9_classI_Rep2	2		2	547.77747	1093.54039	-0.39138	-0.00021439	-6.0189	-0.003297	-6.4102	-0.0035114	547.7741290649847	59.839	0.40862	57.068	56.882	57.291	-2.7702	0.19821	-0.0020703	NaN	71.877	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16873	+		807	17752	574	575							-0.0026405277030789875
AGTGHLDVYLQ	11	Unmodified	_AGTGHLDVYLQ_					0	0	0		LTR7_dup579|chr3:187466299-187466711:-|1.8444027474498268|0.0504993796162977|5.19|418.0|30|3|anti-sense	LTR7_dup579|chr3:187466299-187466711:-|1.8444027474498268|0.0504993796162977|5.19|418.0|30|3|anti-sense	LTR7_dup579|chr3:187466299-187466711:-|1.8444027474498268|0.0504993796162977|5.19|418.0|30|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	587.2962646484375	2	587.29857	1172.58259	-1.8304	-0.001075	-4.0507	-0.002379	-5.8812	-0.003454	587.2961004815837	119.51	2.07	118.17	117.83	119.9	-1.3444					114	39	5	0	0	0	0.70142	1	11205	11205		29.17	3.596	1	737630			808	14808	575	576	1177	1177					0.003199226380502296
AGTILLLSGKI	11	Unmodified	_AGTILLLSGKI_					0	0	0			REV__ENST00000254322.2_1_19:14625750-14625894:-|nuORF	REV__ENST00000254322.2_1_19:14625750-14625894:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	543.3473510742188	2	543.350074	1084.6856	-0.55112	-0.00029945	0.16238	8.823E-05	-0.38874	-0.00021122	543.35003399243	64.404	1.5541	61.679	61.389	62.943	-2.7246					78	29	4	0	0	0	0.29406	1	4921	4921		68.846	5.3123	1	578800	+		809	23877	576	577	1178	1178					0.1466403509666634
AGTKTKTT	8	Unmodified	_AGTKTKTT_					0	0	0		ENST00000359856.10_1_1:183596533-183596665:-|nuORF	ENST00000359856.10_1_1:183596533-183596665:-|nuORF	ENST00000359856.10_1_1:183596533-183596665:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	404.23272705078125	2	404.232168	806.449782	1.4985	0.00060574	0.40137	0.00016225	1.8999	0.00076799	404.2322157005619	134.25	0.93222	134.02	133.46	134.39	-0.22697					47	18	3	0	0	0	0.75006	1	13295	13295		16.473	2.6978	1	139150			810	10757	577	578	1179	1179					0.03881522972039875
AGTLGAIGLP	10	Unmodified	_AGTLGAIGLP_					0	0	0			REV__CON__P04258	REV__CON__P04258	MULTI-MSMS	OvCa9_classI_Rep2	2	435.25775146484375	2	435.258185	868.501818	-0.83065	-0.00036155	3.1909	0.0013889	2.3603	0.0010273	435.2599214188876	52.924	0.98755	50.11	49.788	50.776	-2.8139					45	19	4	0	0	0	0.50656	1	3558	3558		53.351	0	1	142060	+	+	811	16187	578	579	1180	1180					0.062306863857997996
AGTLQLTV	8	Unmodified	_AGTLQLTV_					0	0	0		ENSG00000058453|ENST00000375541|CROCC;nc|ENSG00000058453|Q5TZA2-2|CROCC	ENSG00000058453|ENST00000375541|CROCC	ENSG00000058453|ENST00000375541|CROCC	MULTI-SECPEP	OvCa9_classI_Rep2	2	402.25738525390625	2	401.737086	801.459619	0.12532	5.0344E-05	0.45505	0.00018281	0.58036	0.00023315	401.73707304407776	63.357	2.105	60.613	60.108	62.213	-2.7444					76	39	4	0	0	0	0.028476	1	4805	4805		27.882	0	1	484640			812	1245	579	580	1181	1181					0.05094710977414252
AGVAGSEERR	10	Unmodified	_AGVAGSEERR_					0	0	0			REV__ENST00000334464.6_1_10:119134722-119134830:-|nuORF	REV__ENST00000334464.6_1_10:119134722-119134830:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2951049804688	2	516.265062	1030.51557	-0.17631	-9.1023E-05	-1.3533	-0.00069865	-1.5296	-0.00078967	516.2644739100457	31.956	0.29798	31.956	31.757	32.055	0					6	5	2	0	0	0	0.02676	1	1333	1333		49.536	15.364	1	11684	+		813	24566	580	581	1182	1182					0.0015331214692650974
AGVEDAADANN	11	Unmodified	_AGVEDAADANN_					0	0	0		nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6;ENST00000511802.5_1_5:10353827-10401026:+|nuORF	nc|ENSG00000145495|O60337-6|MARCHF6;ENST00000511802.5_1_5:10353827-10401026:+|nuORF	nc|ENSG00000145495|O60337-6|MARCHF6	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.756591796875	2	523.722892	1045.43123	2.0701	0.0010842	-0.023853	-1.2492E-05	2.0463	0.0010717	523.722258175808	86.266	0.47736	86.266	85.994	86.471	0					17	11	2	0	0	0	0.025344	1	9114	9114		58.23	15.834	1	294520			814	5228;12987	581	582	1183	1183					-0.08966683460494096
AGVFGLFTLIL	11	Unmodified	_AGVFGLFTLIL_					0	0	0			REV__nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	REV__nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8425903320312	2	575.847167	1149.67978	-2.8608	-0.0016474	-4.0802	-0.0023496	-6.941	-0.0039969	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.68263	1	14732	14732		35.618	6.4687	1	356230	+		815	20648	582	583	1184	1184					0.11092936585009738
AGVGLPTRP	9	Unmodified	_AGVGLPTRP_					0	0	0			REV__ENST00000454748.7_1_19:49793382-49793970:-|nuORF	REV__ENST00000454748.7_1_19:49793382-49793970:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	434.2559814453125	2	434.255977	866.497401	-1.6226	-0.00070463	2.276	0.00098837	0.65339	0.00028374	434.25691311912357	37.956	1.2325	35.246	34.781	36.013	-2.7097					43	24	3	0	0	0	0.44294	1	1750	1750		47.916	1.9636	1	109840	+		816	26009	583	584	1185	1185					0.05881221962897598
AGVGPGLAEV	10	Unmodified	_AGVGPGLAEV_					0	0	0		ENST00000466132.5_1_6:31939873-31948823:+|nuORF;ENST00000492583.5_1_6:31939873-31948823:+|nuORF	ENST00000466132.5_1_6:31939873-31948823:+|nuORF	ENST00000466132.5_1_6:31939873-31948823:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	435.25775146484375	2	435.239993	868.465432	-0.81865	-0.00035631	1.189	0.00051751	0.37036	0.0001612	435.24011274271356	53.309	1.4866	50.495	49.788	51.275	-2.8139					53	29	3	0	0	0	0.026669	1	3558	3558		57.811	20.652	1	68667			817	12284	584	585	1186	1186					0.025938094890875618
AGVIRMAL	8	Unmodified	_AGVIRMAL_					0	0	0			REV__tr|A0A553SQD4|A0A553SQD4_NIACIAcyl-CoAdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_23340PE=4SV=1	REV__tr|A0A553SQD4|A0A553SQD4_NIACIAcyl-CoAdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_23340PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.89794921875	2	415.749473	829.484393	0.0010597	4.4055E-07	0.47921	0.00019923	0.48027	0.00019967	415.74957713032734	28.698	0.29965	28.698	28.588	28.888	0					7	5	2	0	0	0	0.028476	1	955	955		23.037	2.5549	1	14995	+		818	30624	585	586	1187	1187					0.06283067579158796
AGVTETIRLS	10	Unmodified	_AGVTETIRLS_					0	0	0		nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	MSMS	OvCa99_classI_Rep5	1	523.7964477539062	2	523.795663	1045.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.587	1	33.587	33.087	34.087	0								0	0	0	0.1467	1	1554	1554		37.812	1.3648	1				819	9076	586	587	1188	1188					0.055808241263775926
AGVTYNAQ	8	Unmodified	_AGVTYNAQ_					0	0	0			REV__nc|ENSG00000189056|P78509-3|RELN	REV__nc|ENSG00000189056|P78509-3|RELN	MULTI-MSMS	OvCa99_classI_Rep5	1	412.2029724121094	2	412.200867	822.387182	0.51002	0.00021023	-0.22093	-9.1068E-05	0.28909	0.00011916	412.20055366708215	51.645	1.2331	51.645	51.332	52.566	0					81	28	4	0	0	0	0.68704	1	3994	3994		45.972	1.4412	1	10026000	+		820	22758	587	588	1189	1189					-0.031116230961515612
AGWLQKVRRK	10	Unmodified	_AGWLQKVRRK_					0	0	0		chr8:127733959-127738794|400|10.04|0.42|4.57|-|2|CASC11,CASC11|1	chr8:127733959-127738794|400|10.04|0.42|4.57|-|2|CASC11,CASC11|1	chr8:127733959-127738794|400|10.04|0.42|4.57|-|2|CASC11,CASC11|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.5907897949219	3	414.591163	1240.75166	0.92323	0.00038276	-0.81974	-0.00033986	0.10349	4.2907E-05	414.5907458901833	32.76	2.0475	30.065	29.544	31.591	-2.6954					114	43	4	0	0	0	0.65849	1	793	793		35.152	2.4015	1	215500			821	537	588	589	1190	1190					0.14091288782060474
AGWNAYIDNL	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AGWNAYIDNL_					1	0	0		ENSG00000108518|ENST00000225655|PFN1;CON__P02584	ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	MSMS	OvCa99_classI_Rep5	1	589.7797241210938	2	589.77747	1177.54039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	162.52	1	162.52	162.02	163.02	0								0	0	0	0.10202	1	19057	19057		68.846	6.7387	1			+	822	2660	589	590	1191	1191					-0.041280527703293046
AHAAAELLGI	10	Unmodified	_AHAAAELLGI_					0	0	0		tr|A0A553SL86|A0A553SL86_NIACIBacillithiolbiosynthesisdeacetylaseBshB1OS=NialliacirculansOX=1397GN=bshB1PE=4SV=1	tr|A0A553SL86|A0A553SL86_NIACIBacillithiolbiosynthesisdeacetylaseBshB1OS=NialliacirculansOX=1397GN=bshB1PE=4SV=1	tr|A0A553SL86|A0A553SL86_NIACIBacillithiolbiosynthesisdeacetylaseBshB1OS=NialliacirculansOX=1397GN=bshB1PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	483.2748107910156	2	483.274367	964.53418	2.8405	0.0013728	-1.4491	-0.00070032	1.3914	0.00067244	483.2735443089121	99.212	0.61076	99.212	98.877	99.488	0					40	14	4	0	0	0	0.64063	1	10944	10944		37.159	1.5408	1	3792700			823	33694	590	591	1192	1192					0.05049473788801606
AHAKVKKLF	9	Unmodified	_AHAKVKKLF_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3397827148438	2	521.332019	1040.64948	-0.97542	-0.00050852	-3.7439	-0.0019518	-4.7193	-0.0024603	521.3297660388447	40.366	0.67696	37.411	37.112	37.789	-2.9541					17	12	2	0	0	0	0.027462	1	1705	1705		40.573	20.091	1	27385			824	7709	591	592	1193	1193					0.13078622710463605
AHALLDIFTI	10	Unmodified	_AHALLDIFTI_					0	0	0		ENSG00000232040|ENST00000452236|SCAND3	ENSG00000232040|ENST00000452236|SCAND3	ENSG00000232040|ENST00000452236|SCAND3	MULTI-SECPEP	OvCa9_classI_Rep2	2	556.7908935546875	2	557.318774	1112.623	-0.34314	-0.00019124	-3.8163	-0.0021269	-4.1594	-0.0023181	557.3166704387213	67.677	0.19804	65.016	64.941	65.139	-2.661					5	3	2	0	0	0	0.026956	1	5296	5296		26.693	0	1	8893.8			825	9290	592	593	1194	1194					0.07118889028470221
AHAPVRRRG	9	Unmodified	_AHAPVRRRG_					0	0	0			REV__ENST00000248098.7_1_16:1750970-1751195:+|nuORF	REV__ENST00000248098.7_1_16:1750970-1751195:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.77362060546875	2	510.302116	1018.58968	-1.2697	-0.00064791	3.9519	0.0020167	2.6822	0.0013688	510.30390571770744	43.638	1.2767	40.63	40.168	41.444	-3.0074					36	24	2	0	0	0	0.027462	1	2067	2067		12.207	3.9756	1	82318	+		826	23844	593	594	1195	1195					0.08112744819800355
AHAVPPQSRA	10	Unmodified	_AHAVPPQSRA_					0	0	0			REV__ENSG00000167971|ENST00000343516|CASKIN1	REV__ENSG00000167971|ENST00000343516|CASKIN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.8029174804688	2	517.280515	1032.54648	0.57721	0.00029858	2.5505	0.0013193	3.1277	0.0016179	517.281751240261	110.22	1.4743	108.62	107.96	109.44	-1.6011					72	27	4	0	0	0	0.026822	1	10109	10109		23.042	0	1	477320	+		827	21324	594	595	1196	1196					0.03150510251862215
AHCVFQNLI	9	Unmodified	_AHCVFQNLI_					0	0	0		ENST00000374279.3_1_9:114694631-114695170:+|nuORF	ENST00000374279.3_1_9:114694631-114695170:+|nuORF	ENST00000374279.3_1_9:114694631-114695170:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.3037109375	2	522.768394	1043.52224	-0.65014	-0.00033988	0.5115	0.00026739	-0.13865	-7.2481E-05	523.2701692348568	139.34	0.59158	139.11	138.91	139.5	-0.22697					16	11	2	0	0	0	0.027462	1	13893	13893		24.203	4.8428	1	11021			828	11031	595	596	1197	1197					0.0022153377396989526
AHCVRSLVH	9	Unmodified	_AHCVRSLVH_					0	0	0			REV__ENSG00000132004|ENST00000393261|FBXW9	REV__ENSG00000132004|ENST00000393261|FBXW9	MULTI-MSMS	OvCa99_classI_Rep5	1	511.2713928222656	2	511.271635	1020.52872	1.0981	0.00056142	-3.6668	-0.0018747	-2.5687	-0.0013133	511.269475257723	155.83	2.8733	155.83	155.27	158.15	0					88	56	2	0	0	0	0.40667	1	18278	18278		51.335	3.4199	1	115970	+		829	19047	596	597	1198	1198					0.019274717253324525
AHDCLQCKYPK	11	Unmodified	_AHDCLQCKYPK_					0	0	0			REV__nc|ENSG00000127152|Q9C0K0-2|BCL11B	REV__nc|ENSG00000127152|Q9C0K0-2|BCL11B	MULTI-MSMS	OvCa9_classI_Rep3	3	435.87408447265625	3	435.874131	1304.60056	1.6775	0.00073119	-1.9934	-0.00086889	-0.31591	-0.0001377	435.8731814901466	111.37	1.5316	110.26	109.85	111.39	-1.1038					87	30	4	0	0	0	0.63942	1	8094	8094		41.08	1.0219	1	394890	+		830	15696	597	598	1199	1199					-0.03955401703115058
AHDFRAKCR	9	Unmodified	_AHDFRAKCR_					0	0	0		TRIM35-PRPF38B|1|fusion;ENSG00000104228|ENST00000305364|TRIM35	TRIM35-PRPF38B|1|fusion	TRIM35-PRPF38B|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.297119140625	2	552.279992	1102.54543	-0.724	-0.00039985	-1.0681	-0.00058988	-1.7921	-0.00098973	552.7803768915987	117.7	0.52574	116.35	116.26	116.79	-1.3444					15	9	2	0	0	0	0.027462	1	11046	11046		19.104	12.791	1	24576			831	36276	598	599	1200	1200					-0.0017402738872078771
AHDLFKVF	8	Unmodified	_AHDLFKVF_					0	0	0			REV__nc|ENSG00000006071|Q09428-2|ABCC8	REV__nc|ENSG00000006071|Q09428-2|ABCC8	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.7698669433594	2	488.766178	975.517802	-1.0571	-0.00051666	0.016107	7.8726E-06	-1.041	-0.00050879	488.76599840059157	26.967	1.8466	26.967	26.642	28.489	0					77	36	3	0	0	0	0.028476	1	726	726		37.028	1.8278	1	202820	+		832	16409	599	600	1201	1201					0.029063926227081538
AHFIIPPLLI	10	Unmodified	_AHFIIPPLLI_					0	0	0			REV__nc|ENSG00000065923|Q96T83|SLC9A7	REV__nc|ENSG00000065923|Q96T83|SLC9A7	MULTI-MSMS	OvCa99_classI_Rep5	1	567.3594360351562	2	567.357702	1132.70085	1.0899	0.00061836	0.73503	0.00041703	1.8249	0.0010354	567.3579662194804	157.32	1.3723	157.32	157	158.37	0					74	27	4	0	0	0	0.65806	1	18423	18423		35.201	2.3883	1	864840	+		833	16805	600	601	1202	1202					0.13980946684523587
AHFLDKYELL	10	Unmodified	_AHFLDKYELL_					0	0	0		tr|A0A553SIG5|A0A553SIG5_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_14795PE=4SV=1	tr|A0A553SIG5|A0A553SIG5_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_14795PE=4SV=1	tr|A0A553SIG5|A0A553SIG5_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_14795PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	624.0125732421875	2	624.834788	1247.65502	0.21656	0.00013531	3.4447	0.0021523	3.6612	0.0022877	624.8377539711358	72.763	0.5819	72.763	72.492	73.074	0					42	14	4	0	0	0	0.026916	1	7140	7140		31.53	24.794	1	2195600			834	33380	601	602	1203	1203					0.04110256711624061
AHGGQASLM	9	Unmodified	_AHGGQASLM_					0	0	0		ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	MULTI-MSMS	OvCa99_classI_Rep5	1	436.21148681640625	2	436.20817	870.401786	3.1994	0.0013956	3.816	0.0016646	7.0154	0.0030602	436.20970827927425	108.17	0.33867	108.17	107.94	108.28	0					13	7	2	0	0	0	0.55588	1	12224	12224		37.159	0.13063	1	236320			835	6369	602	603	1204	1204					-0.03859874219642734
AHGKSYTI	8	Unmodified	_AHGKSYTI_					0	0	0			REV__tr|A0A7D6VSW7|A0A7D6VSW7_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06825PE=4SV=1	REV__tr|A0A7D6VSW7|A0A7D6VSW7_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06825PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	439.556640625	2	438.732335	875.450116	1.0569	0.00046371	-0.11129	-4.8826E-05	0.94565	0.00041489	438.73302959633037	31.051	0.2905	31.051	30.881	31.171	0					9	5	2	0	0	0	0.028476	1	1237	1237		21.702	4.3374	1	6672.4	+		836	31549	603	604	1205	1205					0.00740942691913915
AHHASTKPK	9	Unmodified	_AHHASTKPK_					0	0	0			REV__ENSG00000159788|ENST00000336727|RGS12	REV__ENSG00000159788|ENST00000336727|RGS12	MULTI-MSMS	OvCa99_classI_Rep5	1	488.7698669433594	2	488.769783	975.525013	-0.98426	-0.00048108	1.5964	0.00078029	0.61218	0.00029922	488.77029134011406	26.717	0.24868	26.717	26.593	26.841	0					7	4	2	0	0	0	0.48324	1	726	726		44.117	5.0953	1	74855	+		837	20627	604	605	1206	1206					0.03627125223135863
AHIDWEGDL	9	Unmodified	_AHIDWEGDL_					0	0	0		nc|ENSG00000177707|Q9NQS3-2|NECTIN3;nc|ENSG00000177707|Q9NQS3-3|NECTIN3;ENSG00000177707|ENST00000485303|NECTIN3	nc|ENSG00000177707|Q9NQS3-2|NECTIN3	nc|ENSG00000177707|Q9NQS3-2|NECTIN3	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.7652587890625	2	528.243264	1054.47197	1.9805	0.0010462	1.8377	0.00097078	3.8183	0.002017	528.2443745286066	76.412	0.8033	76.412	76.199	77.002	0					38	19	3	0	0	0	0.027462	1	7663	7663		23.042	0	1	603480			838	7706	605	606	1207	1207					-0.053082973501886954
AHIGALALSRS	11	Unmodified	_AHIGALALSRS_					0	0	0			REV__nc|ENSG00000007516|O94812-7|BAIAP3	REV__nc|ENSG00000007516|O94812-7|BAIAP3	MULTI-MSMS	OvCa9_classI_Rep3	3	548.317138671875	2	548.317097	1094.61964	-0.84164	-0.00046149	0.28768	0.00015774	-0.55396	-0.00030375	548.3171569301378	74.411	2.3795	72	71.151	73.531	-2.4106					140	47	5	0	0	0	0.71591	1	3697	3697		24.203	0	1	1829400	+		839	16437	606	607	1208	1208					0.07611638974458401
AHIIQQNL	8	Unmodified	_AHIIQQNL_					0	0	0		tr|A0A553SH27|A0A553SH27_NIACIMurR/RpiRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_12040PE=4SV=1	tr|A0A553SH27|A0A553SH27_NIACIMurR/RpiRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_12040PE=4SV=1	tr|A0A553SH27|A0A553SH27_NIACIMurR/RpiRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_12040PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	468.3066711425781	2	468.766709	935.518865	0.069736	3.269E-05	-0.88811	-0.00041632	-0.81838	-0.00038363	468.7663174860887	62.167	0.46633	62.167	61.869	62.335	0					16	10	2	0	0	0	0.028476	1	5530	5530		25.45	16.628	1	182360			840	33228	607	608	1209	1209					0.048526069916078995
AHIKEEHCIF	10	Unmodified	_AHIKEEHCIF_					0	0	0		nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	MULTI-MSMS	OvCa99_classI_Rep5	1	409.53765869140625	3	409.537736	1225.59138	0.6769	0.00027722	-3.4676	-0.0014201	-2.7907	-0.0011429	409.53630055980653	50.798	1.9252	50.798	50.509	52.434	0					104	44	6	0	0	0	0.44722	1	3863	3863		61.691	11.658	1	11037000			841	14875;1210	608	609	1210	1210					-0.012394269971309768
AHILCRELG	9	Unmodified	_AHILCRELG_					0	0	0		LOXL3|p.T452Pfs*8|1|0.03|ENSG00000115318|chr2:74535649-74535650|GT/-|frameshift_variant;nc|ENSG00000115318|P58215-3|LOXL3;ENSG00000115318|ENST00000264094|LOXL3	LOXL3|p.T452Pfs*8|1|0.03|ENSG00000115318|chr2:74535649-74535650|GT/-|frameshift_variant	LOXL3|p.T452Pfs*8|1|0.03|ENSG00000115318|chr2:74535649-74535650|GT/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	506.2740478515625	2	506.273844	1010.53313	1.7132	0.00086734	-1.7996	-0.00091107	-0.086391	-4.3737E-05	506.2727467608177	54.771	2.6321	51.6	50.779	53.411	-3.1715					173	88	3	0	0	0	0.70177	1	1510	1510		17.365	0.89182	1	154000			842	3087	609	610	1211	1211					0.028289361482507047
AHKALLAVHSM	11	Unmodified	_AHKALLAVHSM_					0	0	0			REV__COPA|p.H613Tfs*3|1|0.05|ENSG00000122218|chr1:160298986-160298986|C/-|frameshift_variant	REV__COPA|p.H613Tfs*3|1|0.05|ENSG00000122218|chr1:160298986-160298986|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.7672729492188	2	589.32915	1176.64375	1.5507	0.00091389	0.47301	0.00027876	2.0237	0.0011926	589.3295127862552	148.79	0.34636	148.79	148.62	148.97	0					9	6	2	0	0	0	0.026007	1	17403	17403		18.262	0	1	22495	+		843	16226	610	611	1212	1212					0.0624915613648227
AHKIAGDL	8	Unmodified	_AHKIAGDL_					0	0	0			REV__nc|ENSG00000130940|Q86V15-2|CASZ1	REV__nc|ENSG00000130940|Q86V15-2|CASZ1	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.9132080078125	2	412.734877	823.455202	-0.39483	-0.00016296	-0.12361	-5.1019E-05	-0.51844	-0.00021398	412.73466519725235	63.981	0.64397	63.981	63.773	64.417	0					20	15	2	0	0	0	0.028476	1	5821	5821		20.482	17.072	1	249810	+		844	18983	611	612	1213	1213					0.03641246554514055
AHKLVAVVMD	10	Unmodified	_AHKLVAVVMD_					0	0	0		ENSG00000105523|ENST00000263266|FAM83E	ENSG00000105523|ENST00000263266|FAM83E	ENSG00000105523|ENST00000263266|FAM83E	MULTI-MSMS	OvCa9_classI_Rep3	3	541.8052368164062	2	541.804977	1081.5954	0.70177	0.00038022	-1.2555	-0.00068022	-0.5537	-0.0003	541.8042248143938	79.731	1.1616	77.391	76.902	78.063	-2.3399					51	22	4	0	0	0	0.45225	1	4323	4323		60.972	9.6365	1	706290			845	2469	612	613	1214	1214					0.05786662496598183
AHKVRLQLV	9	Unmodified	_AHKVRLQLV_					0	0	0			REV__nc|ENSG00000127329|P23467-4|PTPRB	REV__nc|ENSG00000127329|P23467-4|PTPRB	MULTI-SECPEP	OvCa9_classI_Rep2	2	532.8082885742188	2	532.340375	1062.6662	-1.5961	-0.00084968	0.98849	0.00052621	-0.60763	-0.00032347	532.3409861986762	76.161	0.58008	74.307	74.044	74.624	-1.854					17	10	2	0	0	0	0.027462	1	6303	6303		25.45	0	1	28878	+		846	18810	613	614	1215	1215					0.13737123596411038
AHPEPVLLPD	10	Unmodified	_AHPEPVLLPD_					0	0	0		ENST00000588870.1_1_17:40811874-40817754:+|nuORF;TUBG2|p.Q175Hfs*86|1|0.04|ENSG00000037042|chr17:42663421-42663422|-/CTTTAAAATATCCTTTATAACAAAT|frameshift_variant	ENST00000588870.1_1_17:40811874-40817754:+|nuORF	ENST00000588870.1_1_17:40811874-40817754:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.3091430664062	2	544.292756	1086.57096	-0.47941	-0.00026094	-4.1488	-0.0022582	-4.6282	-0.0025191	544.2905548570612	42.652	0.343	42.652	42.496	42.839	0					11	7	2	0	0	0	0.026915	1	2772	2772		20.947	2.6225	1	183280			847	14079	614	615	1216	1216					0.031137256147076187
AHPFMLLWL	9	Unmodified	_AHPFMLLWL_					0	0	0		ENST00000474612.1_1_6:32164788-32165290:-|nuORF	ENST00000474612.1_1_6:32164788-32165290:-|nuORF	ENST00000474612.1_1_6:32164788-32165290:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	564.3241577148438	2	564.307155	1126.59976	-1.0157	-0.00057317	2.3124	0.0013049	1.2967	0.00073171	564.3085261104816	101.48	0.49483	100.71	100.62	101.11	-0.764					11	9	2	0	0	0	0.027462	1	9341	9341		29.842	0	1	14257			848	12436	615	616	1217	1217					0.041521717101659306
AHPLPNIR	8	Unmodified	_AHPLPNIR_					0	0	0		ZNF502|p.R117Pfs*104|1|0.15|ENSG00000196653|chr3:44721166-44721167|-/CCTTCACTCTGCCCTGTACAGGAGATATTCATTCT|frameshift_variant	ZNF502|p.R117Pfs*104|1|0.15|ENSG00000196653|chr3:44721166-44721167|-/CCTTCACTCTGCCCTGTACAGGAGATATTCATTCT|frameshift_variant	ZNF502|p.R117Pfs*104|1|0.15|ENSG00000196653|chr3:44721166-44721167|-/CCTTCACTCTGCCCTGTACAGGAGATATTCATTCT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	459.2686767578125	2	459.269419	916.524284	0.031118	1.4291E-05	-1.5967	-0.00073333	-1.5656	-0.00071904	459.26858042362244	123.09	1.0403	121.73	121.46	122.5	-1.3666					37	20	3	0	0	0	0.31087	1	11650	11650		105.27	11.262	1	76949			849	36321	616	617	1218	1218					0.06268330574073389
AHPPLLVL	8	Unmodified	_AHPPLLVL_					0	0	0		nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN;nc|ENSG00000130810|Q9NQ55-3|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	MULTI-MSMS	OvCa9_classI_Rep2	2	430.2733459472656	2	430.273638	858.532724	-0.29706	-0.00012782	0.34891	0.00015013	0.051854	2.2311E-05	430.27363198332677	107.54	1.9628	107.24	106.57	108.54	-0.30836					111	39	5	0	0	0	0.64315	3	10037	10037;10048;10055		54.895	21.402	1	399440			850	4017	617	618	1219;1220;1221	1219					0.09779884490706081
AHPPLLVL	8	Unmodified	_AHPPLLVL_					0	0	0		nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN;nc|ENSG00000130810|Q9NQ55-3|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	MULTI-MSMS	OvCa9_classI_Rep3	3	430.2733154296875	2	430.273638	858.532724	0.52903	0.00022763	-0.44668	-0.0001922	0.08235	3.5433E-05	430.27333471569034	108.54	1.6558	107.34	106.9	108.56	-1.1978					82	31	3	0	0	0	0.64315	3	7747	7747;7751;7765		54.895	21.402	1	490810			851	4017	617	618	1222;1223;1224	1222					0.09779884490706081
AHPPLLVL	8	Unmodified	_AHPPLLVL_					0	0	0		nc|ENSG00000130810|Q9NQ55-2|PPAN;ENSG00000130810|ENST00000253107|PPAN;nc|ENSG00000130810|Q9NQ55-3|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	nc|ENSG00000130810|Q9NQ55-2|PPAN	MULTI-MSMS	OvCa9_classI_Rep4_	4	430.2741394042969	2	430.273638	858.532724	0.20112	8.6536E-05	-0.046823	-2.0147E-05	0.1543	6.639E-05	430.27350674453226	109.1	1.7128	107.37	106.97	108.68	-1.7256					93	32	4	0	0	0	0.64315	3	10006	10006;10018;10044		54.895	19.694	1	507820			852	4017	617	618	1225;1226;1227	1225					0.09779884490706081
AHPSQPKPKG	10	Unmodified	_AHPSQPKPKG_					0	0	0		nc|ENSG00000183248|Q9H6K5-2|PRR36;ENSG00000183248|ENST00000618550|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.2769165039062	2	523.790715	1045.56688	-1.3997	-0.00073313	4.0968	0.0021458	2.6971	0.0014127	523.79284092282	41.792	0.41796	38.811	38.593	39.011	-2.9804					10	7	2	0	0	0	0.026782	1	1869	1869		54.776	20.604	1	23229			853	8059	618	619	1228	1228					0.04591680911653384
AHRIVKMNK	9	Unmodified	_AHRIVKMNK_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7;nc|ENSG00000166508|P33993-2|MCM7	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.299072265625	2	548.824035	1095.63352	1.226	0.00067283	-0.42256	-0.00023191	0.80339	0.00044092	548.8238630028934	133.11	0.60918	133.11	132.65	133.26	0					18	12	2	0	0	0	0.027462	1	15431	15431		17.365	0	1	46581			854	6688	619	620	1229	1229					0.08952593201888703
AHRIVSWAV	9	Unmodified	_AHRIVSWAV_					0	0	0		ENST00000261497.8_1_17:20904002-20904044:-|nuORF	ENST00000261497.8_1_17:20904002-20904044:-|nuORF	ENST00000261497.8_1_17:20904002-20904044:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.7720336914062	2	519.795801	1037.57705	-1.3177	-0.00068491	-1.4417	-0.00074937	-2.7593	-0.0014343	519.7950059841777	55.341	0.60975	52.046	51.854	52.464	-3.2944					24	11	3	0	0	0	0.027462	1	3530	3530		40.573	0	1	262790			855	9865	620	621	1230	1230					0.05976288636861682
AHRIVSWAV	9	Unmodified	_AHRIVSWAV_					0	0	0		ENST00000261497.8_1_17:20904002-20904044:-|nuORF	ENST00000261497.8_1_17:20904002-20904044:-|nuORF	ENST00000261497.8_1_17:20904002-20904044:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	519.795801	1037.57705	-0.7961	-0.00041381	-2.9864	-0.0015523	-3.7825	-0.0019661	519.7945746411042	54.952	0.74997	52.138	51.872	52.622	-2.8139	0.045781	-0.0010406	NaN	40.573	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66784			856	9865	620	621							0.05976288636861682
AHRPKLHS	8	Unmodified	_AHRPKLHS_					0	0	0			REV__ENST00000478198.1_1_7:756348-756453:-|nuORF	REV__ENST00000478198.1_1_7:756348-756453:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.7540283203125	2	473.272493	944.530432	-0.28141	-0.00013318	-3.2496	-0.0015379	-3.531	-0.0016711	473.2701101298782	54.764	0.41041	51.516	51.285	51.695	-3.2474					10	7	2	0	0	0	0.028476	1	3403	3403		25.45	11.675	1	8251.2	+		857	26408	621	622	1231	1231					0.05594848805606034
AHRRAGAIV	9	Unmodified	_AHRRAGAIV_					0	0	0			REV__SVA_C_dup104|chr4:48291729-48293365:+|1.5948730950857304|0.4994645192076182|1.67|429.0|16|2|sense	REV__SVA_C_dup104|chr4:48291729-48293365:+|1.5948730950857304|0.4994645192076182|1.67|429.0|16|2|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.7873840332031	2	475.785767	949.556982	1.3095	0.00062303	1.4415	0.00068587	2.751	0.0013089	475.78620886305947	140.59	1.0255	139.1	138.76	139.78	-1.4952					37	19	3	0	0	0	0.65476	1	13711	13711		25.45	2.4077	1	84644	+		858	29472	622	623	1232	1232					0.08018537696932526
AHSAWILIII	10	Unmodified	_AHSAWILIII_					0	0	0		sp|Q6SWC0|UL10_HCMVMUncharacterizedproteinUL10OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL10PE=3SV=1	sp|Q6SWC0|UL10_HCMVMUncharacterizedproteinUL10OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL10PE=3SV=1	sp|Q6SWC0|UL10_HCMVMUncharacterizedproteinUL10OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL10PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	568.8468627929688	2	568.844959	1135.67537	-0.94066	-0.00053509	3.7469	0.0021314	2.8063	0.0015963	568.8468987403617	122.03	1.7301	121.81	120.93	122.66	-0.21803					88	34	3	0	0	0	0.62668	1	11850	11850		38.806	3.1879	1	269790			859	32914	623	624	1233	1233					0.11295472162078113
AHSAWILIII	10	Unmodified	_AHSAWILIII_					0	0	0		sp|Q6SWC0|UL10_HCMVMUncharacterizedproteinUL10OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL10PE=3SV=1	sp|Q6SWC0|UL10_HCMVMUncharacterizedproteinUL10OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL10PE=3SV=1	sp|Q6SWC0|UL10_HCMVMUncharacterizedproteinUL10OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL10PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	568.845703125	2	568.844959	1135.67537	1.1361	0.00064626	1.8132	0.0010315	2.9493	0.0016777	568.845786397459	122.98	2.0826	121.95	121	123.08	-1.034					125	39	4	0	0	0	0.58282	1	9454	9454		44.117	12.162	1	474050			860	32914	623	624	1234	1234					0.11295472162078113
AHSRPVTLS	9	Unmodified	_AHSRPVTLS_					0	0	0		nc|ENSG00000197530|Q96AX9-9|MIB2;ENST00000511502.5_1_1:1550926-1563560:+|nuORF;nc|ENSG00000197530|Q96AX9-10|MIB2;nc|ENSG00000197530|Q96AX9-8|MIB2;nc|ENSG00000197530|Q96AX9-7|MIB2;nc|ENSG00000197530|Q96AX9-4|MIB2;ENSG00000197530|ENST00000355826|MIB2;ENST00000507229.5_1_1:1551767-1563881:+|nuORF;nc|ENSG00000197530|Q96AX9-6|MIB2;nc|ENSG00000197530|Q96AX9-5|MIB2;nc|ENSG00000197530|Q96AX9-3|MIB2	nc|ENSG00000197530|Q96AX9-9|MIB2	nc|ENSG00000197530|Q96AX9-9|MIB2	MULTI-MSMS	OvCa9_classI_Rep2	2	484.269287109375	2	484.269616	966.524678	-0.97487	-0.0004721	0.71113	0.00034438	-0.26374	-0.00012772	484.26987122252336	49.254	1.4869	46.494	45.779	47.266	-2.7603					73	29	3	0	0	0	0.35444	1	3109	3109		56.721	3.3696	1	266680			861	8718	624	625	1235	1235					0.04007705503283887
AHSSYCTDPDL	11	Unmodified	_AHSSYCTDPDL_					0	0	0		ENSG00000138190|ENST00000260762|EXOC6;nc|ENSG00000138190|Q8TAG9-2|EXOC6	ENSG00000138190|ENST00000260762|EXOC6	ENSG00000138190|ENST00000260762|EXOC6	MULTI-MSMS	OvCa9_classI_Rep2	2	604.74560546875	2	604.748053	1207.48155	-5.401	-0.0032662	1.8526	0.0011203	-3.5484	-0.0021459	604.7484452987635	159.25	1.3459	159.02	158.53	159.87	-0.22697					95	26	5	0	0	0	0.70865	1	16182	16182		26.693	0	1	111620			862	4668	625	626	1236	1236					-0.1138889712699438
AHTALERL	8	Unmodified	_AHTALERL_					0	0	0			REV__ENSG00000232434|ENST00000436881|AJM1	REV__ENSG00000232434|ENST00000436881|AJM1	MULTI-MSMS	OvCa9_classI_Rep2	2	455.7583923339844	2	455.758884	909.503215	-0.0063747	-2.9053E-06	-0.40682	-0.00018541	-0.41319	-0.00018832	455.75868139331794	51.389	1.4388	48.576	48.154	49.592	-2.8129					81	28	4	0	0	0	0.67745	1	3363	3363		47.916	3.7988	1	868170	+		863	23394	626	627	1237	1237					0.04484320474546166
AHTALERL	8	Unmodified	_AHTALERL_					0	0	0			REV__ENSG00000232434|ENST00000436881|AJM1	REV__ENSG00000232434|ENST00000436881|AJM1	MULTI-MSMS	OvCa9_classI_Rep4_	4	455.7568664550781	2	455.758884	909.503215	-0.061004	-2.7803E-05	-1.161	-0.00052915	-1.222	-0.00055695	455.7584840982158	51.569	2.2139	48.396	48.072	50.286	-3.1734					101	43	4	0	0	0	0.64026	2	3022	3022;3082		55.504	7.5886	1	5201200	+		864	23394	626	627	1238;1239	1238					0.04484320474546166
AHTIHAWSL	9	Unmodified	_AHTIHAWSL_					0	0	0		chr19:34399631-34399901|98|20.12|0.42|5.57|+|1|GPI,GPI|1	chr19:34399631-34399901|98|20.12|0.42|5.57|+|1|GPI,GPI|1	chr19:34399631-34399901|98|20.12|0.42|5.57|+|1|GPI,GPI|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.2962646484375	2	518.272158	1034.52976	-0.70896	-0.00036744	-3.8314	-0.0019857	-4.5403	-0.0023531	518.2701799718554	94.007	0.37914	91.5	91.393	91.772	-2.5072					14	7	3	0	0	0	0.027456	1	8246	8246		38.806	7.2763	1	22222			865	412	627	628	1240	1240					0.013880093658826809
AHTNKLNL	8	Unmodified	_AHTNKLNL_					0	0	0		L1PA13_dup8637|chr21:8327096-8327843:-|2.0869428863339463|0.0016665760926509|10.29|371.0|8|1|sense	L1PA13_dup8637|chr21:8327096-8327843:-|2.0869428863339463|0.0016665760926509|10.29|371.0|8|1|sense	L1PA13_dup8637|chr21:8327096-8327843:-|2.0869428863339463|0.0016665760926509|10.29|371.0|8|1|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	455.7587890625	2	455.758884	909.503215	-0.0063747	-2.9053E-06	-0.40682	-0.00018541	-0.41319	-0.00018832	455.75868139331794	51.389	1.4388	48.576	48.154	49.592	-2.8129					81	28	4	0	0	0	0.50674	4	3359	3359;3369;3375;3403		76.847	25.344	1	868170			866	14661	628	629	1241;1242;1243;1244	1241					0.04484320474546166
AHTNKLNL	8	Unmodified	_AHTNKLNL_					0	0	0		L1PA13_dup8637|chr21:8327096-8327843:-|2.0869428863339463|0.0016665760926509|10.29|371.0|8|1|sense	L1PA13_dup8637|chr21:8327096-8327843:-|2.0869428863339463|0.0016665760926509|10.29|371.0|8|1|sense	L1PA13_dup8637|chr21:8327096-8327843:-|2.0869428863339463|0.0016665760926509|10.29|371.0|8|1|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	455.7588195800781	2	455.758884	909.503215	-0.061004	-2.7803E-05	-1.161	-0.00052915	-1.222	-0.00055695	455.7584840982158	51.569	2.2139	48.396	48.072	50.286	-3.1734					101	43	4	0	0	0	0.50747	5	3055	3031;3043;3055;3067;3100		76.774	22.533	1	5201200			867	14661	628	629	1245;1246;1247;1248;1249	1247					0.04484320474546166
AHTRPAPK	8	Unmodified	_AHTRPAPK_					0	0	0			REV__ENST00000574951.5_1_17:4872053-4885503:-|nuORF	REV__ENST00000574951.5_1_17:4872053-4885503:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	439.22808837890625	2	439.253769	876.492984	0.30827	0.00013541	-3.4304	-0.0015068	-3.1221	-0.0013714	439.2533174151519	50.165	0.47695	50.165	49.944	50.421	0					18	10	3	0	0	0	0.028476	1	3788	3788		31.955	3.7006	1	110660	+		868	17892	629	630	1250	1250					0.049797575399907146
AHTSIMSYLN	10	Unmodified	_AHTSIMSYLN_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14;nc|ENSG00000175455|Q49A88-2|CCDC14;nc|ENSG00000175455|Q49A88-3|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MULTI-SECPEP	OvCa9_classI_Rep2	2	568.312255859375	2	568.773874	1135.53319	0.80466	0.00045767	-0.063809	-3.6293E-05	0.74085	0.00042137	568.7739337378907	87.444	0.29828	86.013	85.841	86.139	-1.4311					8	5	2	0	0	0	0.026956	1	7633	7633		26.693	0	1	7652.2			869	7545	630	631	1251	1251					-0.0291510864240081
AHVIAACLYL	10	Unmodified	_AHVIAACLYL_					0	0	0		nc|ENSG00000185024|Q92994-7|BRF1;nc|ENSG00000185024|Q92994-8|BRF1;nc|ENSG00000185024|Q92994-5|BRF1;ENSG00000185024|ENST00000547530|BRF1;nc|ENSG00000185024|Q92994-6|BRF1;nc|ENSG00000185024|Q92994-4|BRF1	nc|ENSG00000185024|Q92994-7|BRF1	nc|ENSG00000185024|Q92994-7|BRF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.32470703125	2	537.294245	1072.57394	-0.14991	-8.0546E-05	2.2158	0.0011905	2.0659	0.00111	537.2943895036248	33.289	0.19847	33.289	33.136	33.335	0					6	3	2	0	0	0	0.027007	1	1501	1501		7.6903	0	1	13170			870	8215	631	632	1252	1252					0.04055277467864471
AHYPGNLFEPA	11	Unmodified	_AHYPGNLFEPA_					0	0	0			REV__ENSG00000150394|ENST00000577390|CDH8	REV__ENSG00000150394|ENST00000577390|CDH8	MULTI-MSMS	OvCa9_classI_Rep3	3	405.8672790527344	3	405.864617	1214.57202	3.0032	0.0012189	2.7951	0.0011345	5.7983	0.0023533	405.8656502294352	58.999	2.532	55.873	55.114	57.646	-3.1264					157	70	3	0	0	0	0.70518	1	1932	1932		18.531	0	1	158560	+		871	20188	632	633	1253	1253					-0.026680600163672352
AHYVVQPLLRG	11	Unmodified	_AHYVVQPLLRG_					0	0	0			REV__ENSG00000185875|ENST00000376356|THNSL1	REV__ENSG00000185875|ENST00000376356|THNSL1	MULTI-MSMS	OvCa9_classI_Rep3	3	626.860107421875	2	626.861672	1251.70879	-4.5805	-0.0028714	-0.69914	-0.00043826	-5.2797	-0.0033096	626.8618407947226	153.3	3.2989	152.33	150.69	153.99	-0.97301					77	67	2	0	0	0	0.70865	1	13153	13153		26.693	4.733	1	17447	+		872	22539	633	634	1254	1254					0.09300473933990361
AIAAPILHV	9	Unmodified	_AIAAPILHV_					0	0	0		nc|ENSG00000099998|P36269-2|GGT5;ENSG00000099998|ENST00000327365|GGT5;nc|ENSG00000099998|P36269-3|GGT5	nc|ENSG00000099998|P36269-2|GGT5	nc|ENSG00000099998|P36269-2|GGT5	MULTI-MSMS	OvCa99_classI_Rep5	1	452.7858581542969	2	452.78437	903.554188	0.28966	0.00013115	2.186	0.00098979	2.4757	0.0011209	452.78519628339916	101.67	0.81049	101.67	101.36	102.17	0					46	18	4	0	0	0	0.22187	1	11303	11303		72.62	17.855	1	2410900			873	1992	634	635	1255	1255					0.09855269519425747
AIADYPTK	8	Unmodified	_AIADYPTK_					0	0	0			REV__tr|A0A553SIW7|A0A553SIW7_NIACIGlucose-1-phosphateadenylyltransferaseOS=NialliacirculansOX=1397GN=glgCPE=3SV=1	REV__tr|A0A553SIW7|A0A553SIW7_NIACIGlucose-1-phosphateadenylyltransferaseOS=NialliacirculansOX=1397GN=glgCPE=3SV=1	MSMS	OvCa99_classI_Rep5	1	439.7331237792969	2	439.734543	877.454533	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.242	1	24.242	23.742	24.742	0								0	0	0	0.30129	1	426	426		30.504	6.3009	1		+		874	29939	635	636	1256	1256					0.010904071147933792
AIAELGSAL	9	Unmodified	_AIAELGSAL_					0	0	0		tr|A0A7D7A0N2|A0A7D7A0N2_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00740PE=4SV=1	tr|A0A7D7A0N2|A0A7D7A0N2_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00740PE=4SV=1	tr|A0A7D7A0N2|A0A7D7A0N2_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00740PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	422.22430419921875	2	422.742368	843.470183	-0.097802	-4.1345E-05	3.4318	0.0014507	3.334	0.0014094	422.7442433037908	61.818	0.60795	58.36	58.01	58.618	-3.4577					18	12	2	0	0	0	0.027456	1	4238	4238		16.473	4.2663	1	58558			875	36000	636	637	1257	1257					0.04218693631867154
AIAESDVKEL	10	Unmodified	_AIAESDVKEL_					0	0	0			REV__tr|A0A553SFN8|A0A553SFN8_NIACIN-acetyl-gamma-glutamyl-phosphatereductaseOS=NialliacirculansOX=1397GN=argCPE=3SV=1	REV__tr|A0A553SFN8|A0A553SFN8_NIACIN-acetyl-gamma-glutamyl-phosphatereductaseOS=NialliacirculansOX=1397GN=argCPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	537.7877197265625	2	537.787504	1073.56045	0.54859	0.00029502	0.070501	3.7915E-05	0.61909	0.00033294	537.7873892515643	74.236	0.69273	74.236	73.983	74.676	0					42	17	4	0	0	0	0.41408	1	7333	7333		66.429	2.222	1	2961100	+		876	29599	637	638	1258	1258					0.02661698169617921
AIAFFGPIL	9	Unmodified	_AIAFFGPIL_					0	0	0			REV__tr|A0A553SSG8|A0A553SSG8_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=celBPE=4SV=1	REV__tr|A0A553SSG8|A0A553SSG8_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=celBPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.2572326660156	2	474.781296	947.54804	2.2816	0.0010833	-3.4505	-0.0016382	-1.1689	-0.00055496	474.7793986118692	77.189	0.41731	77.189	77.044	77.461	0					15	9	2	0	0	0	0.027462	1	7782	7782		14.664	0	1	238130	+		877	30837	638	639	1259	1259					0.07216751287910483
AIAGYSTLIL	10	Unmodified	_AIAGYSTLIL_					0	0	0			REV__ENSG00000204702|ENST00000641659|OR2J1	REV__ENSG00000204702|ENST00000641659|OR2J1	MULTI-MSMS	OvCa99_classI_Rep5	1	511.3016052246094	2	511.30005	1020.58555	1.2878	0.00065847	0.75822	0.00038768	2.0461	0.0010461	511.300302651226	146.1	0.94141	146.1	145.78	146.72	0					39	18	3	0	0	0	0.46756	1	17084	17084		58.782	9.2459	1	447090	+		878	23181	639	640	1260	1260					0.07607797762875634
AIAKEPMKLR	10	Unmodified	_AIAKEPMKLR_					0	0	0		tr|A0A553SLR8|A0A553SLR8_NIACIBeta-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_21165PE=3SV=1	tr|A0A553SLR8|A0A553SLR8_NIACIBeta-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_21165PE=3SV=1	tr|A0A553SLR8|A0A553SLR8_NIACIBeta-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_21165PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	578.85009765625	2	578.847176	1155.6798	-0.26138	-0.0001513	2.9573	0.0017118	2.6959	0.0015605	578.8488815686067	32.328	0.49667	32.328	32.154	32.651	0					27	9	4	0	0	0	0.36605	1	1404	1404		72.879	1.0018	1	489920			879	33757	640	641	1261	1261					0.10818613313335845
AIAKRIGAPK	10	Unmodified	_AIAKRIGAPK_					0	0	0		nc|ENSG00000106078|O75128-6|COBL;ENST00000462395.1_1_7:51085250-51098638:-|nuORF;nc|ENSG00000106078|O75128-3|COBL;ENSG00000106078|ENST00000265136|COBL;nc|ENSG00000106078|O75128-7|COBL;nc|ENSG00000106078|O75128-2|COBL	nc|ENSG00000106078|O75128-6|COBL	nc|ENSG00000106078|O75128-6|COBL	MULTI-MSMS	OvCa9_classI_Rep3	3	512.8353271484375	2	512.834926	1023.6553	-0.33027	-0.00016937	0.00014341	7.3545E-08	-0.33012	-0.0001693	512.8347899338833	89.789	1.9382	87.709	87.337	89.275	-2.0805					86	37	4	0	0	0	0.59703	1	5540	5540		42.396	1.618	1	487290			880	2527	641	642	1262	1262					0.14441721222124215
AIAPAGRVK	9	Unmodified	_AIAPAGRVK_					0	0	0			REV__ENST00000589290.1_1_19:13875402-13879305:+|nuORF	REV__ENST00000589290.1_1_19:13875402-13879305:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	441.7625427246094	2	441.779619	881.544686	0.89169	0.00039393	-0.74368	-0.00032854	0.14801	6.5388E-05	441.7791011206882	58.754	0.44268	58.754	58.53	58.973	0					21	10	3	0	0	0	0.027448	1	5033	5033		53.351	14.545	1	1068600	+		881	16613	642	643	1263	1263					0.09917501233883286
AIAPDIATL	9	Unmodified	_AIAPDIATL_					0	0	0			REV__ENST00000464037.5_1_21:33825516-33887497:+|nuORF	REV__ENST00000464037.5_1_21:33825516-33887497:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.22491455078125	2	442.758018	883.501483	0.73019	0.0003233	-3.8625	-0.0017102	-3.1323	-0.0013869	442.75622854995476	29.758	0.49996	29.758	29.586	30.086	0					22	9	4	0	0	0	0.027462	1	1074	1074		11.511	7.5258	1	152390	+		882	21244	643	644	1264	1264					0.055072666659384595
AIAPIIAAV	9	Unmodified	_AIAPIIAAV_					0	0	0		ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2;ELAC2|p.G331Rfs*34|1|0.18|ENSG00000006744|chr17:13003568-13003569|-/C|frameshift_variant;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	419.7734680175781	2	419.773471	837.53239	0.76778	0.00032229	-0.55186	-0.00023166	0.21592	9.0636E-05	419.77314101334446	129.27	0.93849	127.82	127.5	128.44	-1.4565					31	18	2	0	0	0	0.61768	1	12385	12385		29.842	8.1392	1	45628			883	891;12594	644	645	1265	1265					0.1071246477083605
AIAPIIAAV	9	Unmodified	_AIAPIIAAV_					0	0	0		ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2;ELAC2|p.G331Rfs*34|1|0.18|ENSG00000006744|chr17:13003568-13003569|-/C|frameshift_variant;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	419.773471	837.53239	1.437	0.0006032	-1.2427	-0.00052164	0.1943	8.156E-05	419.772953628918	128.13	0.68995	127.91	127.64	128.33	-0.22697	0.045493	-0.00018263	NaN	29.842	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32631			884	891;12594	644	645							0.1071246477083605
AIAPIIAAV	9	Unmodified	_AIAPIIAAV_					0	0	0		ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2;ELAC2|p.G331Rfs*34|1|0.18|ENSG00000006744|chr17:13003568-13003569|-/C|frameshift_variant;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	419.773471	837.53239	1.4378	0.00060355	-1.2524	-0.00052572	0.18541	7.7829E-05	419.7729736688001	128.95	0.74132	127.86	127.62	128.36	-1.0933	-0.00086097	-0.00019078	NaN	29.842	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18502			885	891;12594	644	645							0.1071246477083605
AIAPLTITLV	10	Unmodified	_AIAPLTITLV_					0	0	0		nc|ENSG00000120251|P42262-4|GRIA2;nc|ENSG00000120251|P42262-2|GRIA2;ENSG00000120251|ENST00000264426|GRIA2;nc|ENSG00000120251|P42262-3|GRIA2;GRIA2|p.L542Mfs*16|1|0.37|ENSG00000120251|chr4:157336524-157336530|CCTTTAG/-|frameshift_variant;ENSG00000152578|ENST00000282499|GRIA4	nc|ENSG00000120251|P42262-4|GRIA2	nc|ENSG00000120251|P42262-4|GRIA2	MULTI-MSMS	OvCa9_classI_Rep3	3	506.3250732421875	2	506.326068	1010.63758	-1.1859	-0.00060045	-1.3158	-0.00066623	-2.5017	-0.0012667	506.3252171865675	75.863	1.6032	73.491	73.112	74.715	-2.3715					111	30	6	0	0	0	0.61209	1	3866	3866		40.573	1.7665	1	794960			886	3421	645	646	1266	1266					0.1326896117659544
AIAQLVGLPI	10	Unmodified	_AIAQLVGLPI_					0	0	0			REV__ENSG00000146411|ENST00000275230|SLC2A12	REV__ENSG00000146411|ENST00000275230|SLC2A12	MULTI-MSMS	OvCa99_classI_Rep5	1	497.8194885253906	2	497.81841	993.622267	1.9364	0.00096399	0.20708	0.00010309	2.1435	0.0010671	497.81814880931734	136.77	0.57495	136.77	136.49	137.06	0					26	11	3	0	0	0	0.56767	1	15944	15944		45.952	7.1458	1	173860	+		887	20016	646	647	1267	1267					0.12520094379431157
AIAVSDLILV	10	Unmodified	_AIAVSDLILV_					0	0	0			REV__ENSG00000197790|ENST00000360213|OR52M1	REV__ENSG00000197790|ENST00000360213|OR52M1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.29144287109375	2	507.3157	1012.61685	-1.5442	-0.0007834	-2.2803	-0.0011568	-3.8245	-0.0019402	507.31447205946364	72.381	1.1662	68.985	68.667	69.833	-3.3961					38	23	2	0	0	0	0.026871	1	5589	5589		37.159	8.0096	1	113990	+		888	22952	647	648	1268	1268					0.11104370796965668
AICFWKKEIKR	11	Unmodified	_AICFWKKEIKR_					0	0	0		ENST00000279907.11_2_12:100444948-100451384:-|nuORF	ENST00000279907.11_2_12:100444948-100451384:-|nuORF	ENST00000279907.11_2_12:100444948-100451384:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.2907409667969	3	474.607713	1420.80131	1.1342	0.00053828	0.27216	0.00012917	1.4063	0.00066745	474.94232956975026	97.788	0.50932	95.41	95.166	95.675	-2.3786					17	9	3	0	0	0	0.026079	1	8644	8644		25.126	17.447	1	22807			889	10041	648	649	1269	1269					0.10774235675830823
AICIVHLPIVM	11	Unmodified	_AICIVHLPIVM_					0	0	0		ENST00000585799.5_1_19:11132109-11172489:+|nuORF	ENST00000585799.5_1_19:11132109-11172489:+|nuORF	ENST00000585799.5_1_19:11132109-11172489:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	604.84765625	2	604.84833	1207.68211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	151.38	1	149.94	149.44	150.44	-1.4344								0	0	0	0.19474	1	14961	14961		0.90815	0	1				890	14041	649	650	1270	1270					0.0865732572676734
AIDPHLLLSV	10	Unmodified	_AIDPHLLLSV_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	OvCa9_classI_Rep2	2	539.3182373046875	2	539.318774	1076.623	0.13855	7.4723E-05	-0.35134	-0.00018949	-0.21279	-0.00011476	539.3184004878584	126.78	1.1383	126.54	126.24	127.38	-0.2359					45	22	3	0	0	0	0.26627	1	12391	12391		84.916	18.486	1	124630			891	3504	650	651	1271	1271					0.08774889028472899
AIDPHLLLSV	10	Unmodified	_AIDPHLLLSV_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	OvCa9_classI_Rep4_	4	539.3172607421875	2	539.318774	1076.623	-1.2049	-0.00064984	0.77502	0.00041798	-0.4299	-0.00023185	539.319023111798	127.88	1.2801	126.44	125.99	127.27	-1.4357					46	24	3	0	0	0	0.35465	2	12223	12200;12223		74.255	22.92	1	179390			892	3504	650	651	1272;1273	1273					0.08774889028472899
AIEDKATGEQ	10	Unmodified	_AIEDKATGEQ_					0	0	0			REV__tr|A0A553SSV8|A0A553SSV8_NIACIProbablemembranetransporterproteinOS=NialliacirculansOX=1397GN=CEQ21_03930PE=3SV=1	REV__tr|A0A553SSV8|A0A553SSV8_NIACIProbablemembranetransporterproteinOS=NialliacirculansOX=1397GN=CEQ21_03930PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.2573852539062	2	531.259111	1060.50367	-1.9674	-0.0010452	-4.0943	-0.0021751	-6.0617	-0.0032204	531.2567008418094	45.28	2.4897	42.242	41.765	44.254	-3.0385					92	47	4	0	0	0	0.5635	1	2309	2309		46.457	0.48454	1	394290	+		893	30884	651	652	1274	1274					-0.024163493868854857
AIEDKATGEQ	10	Unmodified	_AIEDKATGEQ_					0	0	0			REV__tr|A0A553SSV8|A0A553SSV8_NIACIProbablemembranetransporterproteinOS=NialliacirculansOX=1397GN=CEQ21_03930PE=3SV=1	REV__tr|A0A553SSV8|A0A553SSV8_NIACIProbablemembranetransporterproteinOS=NialliacirculansOX=1397GN=CEQ21_03930PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	531.259111	1060.50367	-0.87095	-0.0004627	-5.5817	-0.0029654	-6.4527	-0.0034281	531.2559439893083	45.282	1.0506	42.572	42.099	43.15	-2.7097	0.165	-0.0009826	NaN	46.457	40	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75443	+		894	30884	651	652							-0.024163493868854857
AIEKIKNVALQ	11	Unmodified	_AIEKIKNVALQ_					0	0	0			REV__ENST00000461290.5_1_2:73461506-73471178:+|nuORF	REV__ENST00000461290.5_1_2:73461506-73471178:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	409.58624267578125	3	409.587084	1225.73942	0.32141	0.00013165	-2.4149	-0.00098913	-2.0935	-0.00085749	409.58604221610193	37.367	0.64686	37.367	37.114	37.761	0					35	13	4	0	0	0	0.71831	1	2041	2041		23.378	0.81632	1	582550	+		895	19306	652	653	1275	1275					0.13558207528376442
AIETSEHKV	9	Unmodified	_AIETSEHKV_					0	0	0		tr|A0A7D6W1E8|A0A7D6W1E8_9CLOTPhosphomannomutase/phosphoglucomutaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02450PE=3SV=1	tr|A0A7D6W1E8|A0A7D6W1E8_9CLOTPhosphomannomutase/phosphoglucomutaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02450PE=3SV=1	tr|A0A7D6W1E8|A0A7D6W1E8_9CLOTPhosphomannomutase/phosphoglucomutaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02450PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.271484375	2	507.266739	1012.51892	-0.33117	-0.00016799	2.9767	0.00151	2.6455	0.001342	507.2682408608797	90.587	1.3289	88.012	87.7	89.029	-2.575					56	25	4	0	0	0	0.38529	1	7816	7816		53.351	0.41475	1	237270			896	35408	653	654	1276	1276					0.013165622009523759
AIFIGKLPF	9	Unmodified	_AIFIGKLPF_					0	0	0			REV__DENND5A|p.L368Wfs*62|1|0.17|ENSG00000184014|chr11:9193511-9193529|GCTTTGACCGGTCATCCAG/-|frameshift_variant	REV__DENND5A|p.L368Wfs*62|1|0.17|ENSG00000184014|chr11:9193511-9193529|GCTTTGACCGGTCATCCAG/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	503.76409912109375	2	503.310221	1004.60589	-1.5944	-0.0008025	-2.7788	-0.0013986	-4.3732	-0.0022011	503.30870588581666	93.571	0.35121	91.609	91.378	91.729	-1.9617					10	6	2	0	0	0	0.027462	1	5998	5998		33.516	5.6333	1	10001	+		897	16287	654	655	1277	1277					0.10377013213326336
AIFVGGAGH	9	Unmodified	_AIFVGGAGH_					0	0	0			REV__ETNPPL|p.N329Rfs*16|1|0.16|ENSG00000164089|chr4:108748100-108748101|AT/-|frameshift_variant	REV__ETNPPL|p.N329Rfs*16|1|0.16|ENSG00000164089|chr4:108748100-108748101|AT/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.2103576660156	2	414.72177	827.428987	0.38787	0.00016086	-4.0943	-0.001698	-3.7064	-0.0015371	414.7199452000071	48.74	0.43981	48.74	48.455	48.895	0					17	9	3	0	0	0	0.027462	1	3578	3578		21.702	13.471	1	330600	+		898	20940	655	656	1278	1278					0.008369773830509075
AIGAPHALVL	10	Unmodified	_AIGAPHALVL_					0	0	0			REV__ENST00000322764.9_1_7:143087806-143088163:+|nuORF	REV__ENST00000322764.9_1_7:143087806-143088163:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	481.2956237792969	2	481.295102	960.575651	0.43241	0.00020812	-0.93648	-0.00045072	-0.50407	-0.00024261	481.2946009168863	92.061	1.4014	90.826	90.484	91.886	-1.2355					70	26	4	0	0	0	0.65806	1	8197	8197		35.201	1.6851	1	508530	+		899	24462	656	657	1279	1279					0.09378654548117993
AIGAPHALVL	10	Unmodified	_AIGAPHALVL_					0	0	0			REV__ENST00000322764.9_1_7:143087806-143088163:+|nuORF	REV__ENST00000322764.9_1_7:143087806-143088163:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.2964782714844	2	481.295102	960.575651	-0.76225	-0.00036687	0.085447	4.1125E-05	-0.67681	-0.00032574	481.2950772231885	93.318	1.3581	90.81	90.513	91.871	-2.5072					61	28	4	0	0	0	0.65806	1	8149	8149		35.201	4.6971	1	573940	+		900	24462	656	657	1280	1280					0.09378654548117993
AIGGRNENGAL	11	Unmodified	_AIGGRNENGAL_					0	0	0		ENSG00000135686|ENST00000564996|KLHL36;ENST00000325279.4_1_16:84693236-84695736:+|nuORF	ENSG00000135686|ENST00000564996|KLHL36	ENSG00000135686|ENST00000564996|KLHL36	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.2930297851562	2	536.280712	1070.54687	-1.5834	-0.00084915	-3.0117	-0.0016151	-4.5951	-0.0024643	536.2792583429155	70.744	0.76722	67.269	66.842	67.61	-3.4749					19	15	2	0	0	0	0.025822	1	5314	5314		54.722	0	1	31087			901	4401	657	658	1281	1281					0.014418851810432898
AIGIGVAGII	10	Unmodified	_AIGIGVAGII_					0	0	0			REV__ENSG00000010278|ENST00000009180|CD9	REV__ENSG00000010278|ENST00000009180|CD9	MULTI-MSMS	OvCa9_classI_Rep4_	4	442.2855529785156	2	442.284203	882.553853	0.10729	4.7454E-05	-0.064456	-2.8508E-05	0.042836	1.8946E-05	442.2840700770903	83.732	1.9627	81.069	80.681	82.643	-2.6629					125	40	4	0	0	0	0.49566	1	7016	7016		54.765	10.234	1	1109000	+		902	16475	658	659	1282	1282					0.10787849799555715
AIGKMKVL	8	Unmodified	_AIGKMKVL_					0	0	0		tr|A0A553SLI3|A0A553SLI3_NIACIYdcFfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20725PE=4SV=1	tr|A0A553SLI3|A0A553SLI3_NIACIYdcFfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20725PE=4SV=1	tr|A0A553SLI3|A0A553SLI3_NIACIYdcFfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20725PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	430.2738342285156	2	430.275324	858.536095	-0.29705	-0.00012782	-3.5681	-0.0015353	-3.8652	-0.0016631	430.27363198332677	107.54	1.9628	107.24	106.57	108.54	-0.30836					111	39	5	0	0	0	0.67106	1	10042	10042		49.211	5.5847	1	399440			903	33725	659	660	1283	1283					0.10116811273064741
AIGLDAILAVG	11	Unmodified	_AIGLDAILAVG_					0	0	0			REV__tr|A0A7D7A4C7|A0A7D7A4C7_9CLOTPDZdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02535PE=4SV=1	REV__tr|A0A7D7A4C7|A0A7D7A4C7_9CLOTPDZdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02535PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	506.8043212890625	2	506.8055	1011.59645	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.896	1	26.896	26.396	27.396	0								0	0	0	0.19359	1	744	744		37.159	2.9866	1		+		904	32603	660	661	1284	1284					0.09111200137135711
AIGNIPIYGF	10	Unmodified	_AIGNIPIYGF_					0	0	0			REV__L1PA15_dup4761|chrX:56137796-56140776:+|1.2704796762244717|0.2808252408673861|2.18|428.0|145|2|anti-sense	REV__L1PA15_dup4761|chrX:56137796-56140776:+|1.2704796762244717|0.2808252408673861|2.18|428.0|145|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.781494140625	2	532.792392	1063.57023	1.8097	0.00096418	-3.4414	-0.0018336	-1.6317	-0.00086937	532.7906040528635	79.5	1.1971	79.5	79.202	80.399	0					57	29	3	0	0	0	0.026939	1	8210	8210		24.203	4.206	1	2390500	+		905	28476	661	662	1285	1285					0.040989309656424666
AIGPCLVMLGG	11	Unmodified	_AIGPCLVMLGG_					0	0	0			REV__ENSG00000142484|ENST00000270560|TM4SF5	REV__ENSG00000142484|ENST00000270560|TM4SF5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.8152465820312	2	515.774831	1029.53511	-1.1881	-0.00061278	-0.91092	-0.00046983	-2.099	-0.0010826	515.7743623930415	127.44	1.0177	126	125.69	126.71	-1.4357					36	19	3	0	0	0	0.025361	1	12228	12228		24.203	0	1	51557	+		906	19786	662	663	1286	1286					0.02152228841850956
AIGPLKRSL	9	Unmodified	_AIGPLKRSL_					0	0	0			REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.9363098144531	2	477.808377	953.6022	-0.7443	-0.00035563	0.56311	0.00026906	-0.18119	-8.6576E-05	477.80846127722145	71.681	1.0726	68.225	67.975	69.047	-3.4563					44	21	3	0	0	0	0.027462	1	5462	5462		35.618	0.41757	1	118230	+		907	17513	663	664	1287	1287					0.12354343439471904
AIGRVPNT	8	Unmodified	_AIGRVPNT_					0	0	0		nc|ENSG00000104687|P00390-2|GSR;nc|ENSG00000104687|P00390-3|GSR;ENSG00000104687|ENST00000221130|GSR	nc|ENSG00000104687|P00390-2|GSR	nc|ENSG00000104687|P00390-2|GSR	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.21044921875	2	414.240327	826.466101	0.016968	7.0288E-06	0.2209	9.1505E-05	0.23787	9.8534E-05	414.2403061672314	50.354	0.78699	50.354	49.988	50.775	0					28	17	2	0	0	0	0.028476	1	3794	3794		30.504	1.3541	1	1950800			908	2385	664	665	1288	1288					0.045926489288035555
AIGVLWILVP	10	Unmodified	_AIGVLWILVP_					0	0	0			REV__tr|A0A7D6VUH7|A0A7D6VUH7_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_17505PE=4SV=1	REV__tr|A0A7D6VUH7|A0A7D6VUH7_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_17505PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.8322143554688	2	540.844428	1079.6743	-2.1456	-0.0011605	3.8866	0.002102	1.7409	0.00094158	540.8464073888392	125.04	0.31499	123.65	123.54	123.86	-1.3908					8	5	2	0	0	0	0.026839	1	11881	11881		26.796	0	1	15548	+		909	31679	665	666	1289	1289					0.13765257793193086
AIGVLWILVP	10	Unmodified	_AIGVLWILVP_					0	0	0			REV__tr|A0A7D6VUH7|A0A7D6VUH7_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_17505PE=4SV=1	REV__tr|A0A7D6VUH7|A0A7D6VUH7_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_17505PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	540.844428	1079.6743	1.0898	0.00058944	-3.1117	-0.0016829	-2.0218	-0.0010935	540.842655652273	123.67	0.54667	123.67	123.37	123.92	0	0.010036	-0.00069387	NaN	26.796	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145490	+		910	31679	665	666							0.13765257793193086
AIGWEWPWVYF	11	Unmodified	_AIGWEWPWVYF_					0	0	0		nc|ENSG00000157388|Q01668-2|CACNA1D	nc|ENSG00000157388|Q01668-2|CACNA1D	nc|ENSG00000157388|Q01668-2|CACNA1D	MULTI-MSMS	OvCa9_classI_Rep2	2	485.23712158203125	3	485.236163	1452.68666	-0.68923	-0.00033444	1.9646	0.00095328	1.2753	0.00061885	485.23718396391587	56.503	4.4081	53.699	53.324	57.732	-2.804					235	86	5	0	0	0	0.59615	3	3988	3982;3988;4018		45.022	7.4223	1	702640			911	15117	666	667	1290;1291;1292	1291					-0.021577505344566816
AIGYAEET	8	Unmodified	_AIGYAEET_					0	0	0		tr|A0A553SGN8|A0A553SGN8_NIACIAmidophosphoribosyltransferaseOS=NialliacirculansOX=1397GN=purFPE=3SV=1	tr|A0A553SGN8|A0A553SGN8_NIACIAmidophosphoribosyltransferaseOS=NialliacirculansOX=1397GN=purFPE=3SV=1	tr|A0A553SGN8|A0A553SGN8_NIACIAmidophosphoribosyltransferaseOS=NialliacirculansOX=1397GN=purFPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	427.87591552734375	2	427.200533	852.386513	0.21107	9.0168E-05	-0.47501	-0.00020293	-0.26395	-0.00011276	427.2003727522963	21.367	0.25462	20.028	19.813	20.068	-1.3386					7	4	2	0	0	0	0.028476	1	139	139		4.3163	0	1	6697.3			912	33178	667	668	1293	1293					-0.04558462535851504
AIIDHIFASK	10	Unmodified	_AIIDHIFASK_					0	0	0		nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1;nc|ENSG00000152332|Q8TAS1-2|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	MULTI-MSMS	OvCa9_classI_Rep2	2	557.815185546875	2	557.816399	1113.61824	1.7888	0.00099781	-2.4748	-0.0013805	-0.68597	-0.00038265	557.8147879156784	91.11	2.1299	89.874	89.143	91.273	-1.2355					69	40	2	0	0	0	0.35539	2	8069	8069;8082		74.165	20.792	1	579660			913	15099	668	669	1294;1295	1294					0.06598004885699993
AIIDHIFASK	10	Unmodified	_AIIDHIFASK_					0	0	0		nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1;nc|ENSG00000152332|Q8TAS1-2|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.8175048828125	2	557.816399	1113.61824	-0.098101	-5.4723E-05	-0.26359	-0.00014703	-0.36169	-0.00020176	557.8162371778843	92.39	1.1112	89.847	89.567	90.678	-2.5425					60	21	4	0	0	0	0.17251	1	8030	8030		98.582	29.736	1	659630			914	15099	668	669	1296	1296					0.06598004885699993
AIIDHIFASK	10	Unmodified	_AIIDHIFASK_					0	0	0		nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1;nc|ENSG00000152332|Q8TAS1-2|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	557.816399	1113.61824	-1.5131	-0.00084405	0.46428	0.00025898	-1.0489	-0.00058507	557.8166482591623	91.889	1.7325	89.865	89.534	91.266	-2.0241	0.0025209	0.0011613	NaN	98.582	65	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	775200			915	15099	668	669							0.06598004885699993
AIIDIFYLF	9	Unmodified	_AIIDIFYLF_					0	0	0			REV__ENST00000355773.5_1_6:74325102-74331662:-|nuORF	REV__ENST00000355773.5_1_6:74325102-74331662:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	557.8152465820312	2	557.812793	1113.61103	1.7888	0.00099781	3.9885	0.0022249	5.7773	0.0032227	557.8147879156784	91.11	2.1299	89.874	89.143	91.273	-1.2355					69	40	2	0	0	0	0.22913	1	8075	8075		71.378	5.9125	1	579660	+		916	24754	669	670	1297	1297					0.05877272285283652
AIIENAKIN	9	Unmodified	_AIIENAKIN_					0	0	0			REV__tr|A0A7D6VSE3|A0A7D6VSE3_9CLOTV-typeATPsynthasesubunitEOS=ClostridiumintestinaleOX=36845GN=HZF06_06145PE=3SV=1	REV__tr|A0A7D6VSE3|A0A7D6VSE3_9CLOTV-typeATPsynthasesubunitEOS=ClostridiumintestinaleOX=36845GN=HZF06_06145PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	493.2875061035156	2	493.287474	984.560395	-2.1082	-0.0010399	2.309	0.001139	0.20086	9.9083E-05	493.28819732144296	36.134	1.2341	33.425	33.251	34.485	-2.7097					50	24	3	0	0	0	0.59983	1	1530	1530		31.955	1.4512	1	188470	+		917	31494	670	671	1298	1298					0.06749742960289495
AIIFGRIVPE	10	Unmodified	_AIIFGRIVPE_					0	0	0			REV__ENSG00000163810|ENST00000296125|TGM4	REV__ENSG00000163810|ENST00000296125|TGM4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.8177490234375	2	557.834591	1113.65463	0.19667	0.00010971	2.7763	0.0015487	2.973	0.0016584	557.8356046575158	91.722	1.3709	89.179	88.553	89.924	-2.5425					33	26	2	0	0	0	0.026659	1	8017	8017		37.812	4.9991	1	30035	+		918	20893	671	672	1299	1299					0.10234881782434968
AIIFGRIVPE	10	Unmodified	_AIIFGRIVPE_					0	0	0			REV__ENSG00000163810|ENST00000296125|TGM4	REV__ENSG00000163810|ENST00000296125|TGM4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	557.834591	1113.65463	-1.2262	-0.00068399	4.2097	0.0023483	2.9836	0.0016643	557.8366419305562	91.246	1.1132	89.222	88.624	89.737	-2.0241	0.021177	0.00084577	NaN	37.812	30	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40040	+		919	20893	671	672							0.10234881782434968
AIIFTFIVLSI	11	Unmodified	_AIIFTFIVLSI_					0	0	0			REV__tr|A0A7D7AF40|A0A7D7AF40_9CLOTIronABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04560PE=3SV=1	REV__tr|A0A7D7AF40|A0A7D7AF40_9CLOTIronABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04560PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	412.92669677734375	3	412.924925	1235.75295	-0.25244	-0.00010424	3.8201	0.0015774	3.5677	0.0014732	412.92657077571874	54.81	2.7333	51.996	51.573	54.306	-2.8139					157	54	5	0	0	0	0.62561	1	3772	3772		42.338	10.704	1	2429000	+		920	32709	672	673	1300	1300					0.1445006530759656
AIIGVRGLSI	10	Unmodified	_AIIGVRGLSI_					0	0	0		ENST00000485159.5_1_9:82188246-82242462:+|nuORF	ENST00000485159.5_1_9:82188246-82242462:+|nuORF	ENST00000485159.5_1_9:82188246-82242462:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.7677307128906	2	499.821484	997.628415	-0.82225	-0.00041098	0.74792	0.00037383	-0.074324	-3.7149E-05	499.82186621623174	66.462	1.4208	62.972	62.467	63.888	-3.4902					64	28	3	0	0	0	0.026936	1	4923	4923		84.916	21.609	1	169580			921	12610	673	674	1301	1301					0.1295061261095043
AIILTHLDG	9	Unmodified	_AIILTHLDG_					0	0	0			REV__PALLD-NFE2L2|1|fusion	REV__PALLD-NFE2L2|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	476.77655029296875	2	476.776742	951.538931	1.2649	0.00060308	1.5738	0.00075035	2.8387	0.0013534	476.7758510903552	113.82	1.6266	112.75	112.3	113.93	-1.0726					103	31	5	0	0	0	0.39645	1	8413	8413		52.299	2.2746	1	578600	+		922	29275	674	675	1302	1302					0.061223579315765164
AIILVAPLMS	10	Unmodified	_AIILVAPLMS_					0	0	0			REV__ENST00000521792.2_1_8:43126156-43127029:-|nuORF	REV__ENST00000521792.2_1_8:43126156-43127029:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.7872924804688	2	514.314646	1026.61474	-0.39086	-0.00020102	2.7215	0.0013997	2.3306	0.0011987	514.3157637840427	39.473	1.1564	36.547	36.346	37.502	-2.9264					49	22	4	0	0	0	0.026768	1	1633	1633		24.203	0	1	169830	+		923	27076	675	676	1303	1303					0.10249618787474901
AIINNKLIN	9	Unmodified	_AIINNKLIN_					0	0	0			REV__tr|A0A7D6W185|A0A7D6W185_9CLOTIsochorismatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02240PE=4SV=1	REV__tr|A0A7D6W185|A0A7D6W185_9CLOTIsochorismatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02240PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.8102722167969	2	506.811116	1011.60768	-0.91945	-0.00046599	-1.1845	-0.0006003	-2.1039	-0.0010663	506.81048510289196	101.22	3.3613	98.954	98.29	101.65	-2.2665					172	65	4	0	0	0	0.16524	1	9080	9080		82.305	0.064519	1	2669900	+		924	31880	676	677	1304	1304					0.1023402223128187
AIIRPLPKVKR	11	Unmodified	_AIIRPLPKVKR_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-SECPEP	OvCa9_classI_Rep4_	4	646.3611450195312	2	645.940257	1289.86596	0.6401	0.00041347	-0.40552	-0.00026194	0.23459	0.00015153	646.4387210448082	61.514	0.33479	58.056	57.816	58.151	-3.4577					12	6	2	0	0	0	0.026007	1	4231	4231		18.262	8.5564	1	31599			925	4670	677	678	1305	1305					0.23262178544155176
AIISGPVSAIS	11	Unmodified	_AIISGPVSAIS_					0	0	0			REV__ENST00000300853.7_1_19:45912155-45912317:-|nuORF	REV__ENST00000300853.7_1_19:45912155-45912317:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	507.7959289550781	2	507.795132	1013.57571	0.46567	0.00023646	-0.74855	-0.00038011	-0.28288	-0.00014365	507.79468027624847	128.34	1.2845	127.25	126.97	128.26	-1.0933					67	25	4	0	0	0	0.48738	1	10122	10122		54.776	0.053964	1	352990	+		926	24238	678	679	1306	1306					0.06946609757483202
AIISLSWPR	9	Unmodified	_AIISLSWPR_					0	0	0		ENST00000494295.1_1_X:134477565-134477790:-|nuORF	ENST00000494295.1_1_X:134477565-134477790:-|nuORF	ENST00000494295.1_1_X:134477565-134477790:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.8154296875	2	521.805834	1041.59712	-1.5211	-0.00079374	-2.8605	-0.0014926	-4.3817	-0.0022864	521.8042128872286	65.864	0.6244	65.864	65.625	66.25	0					21	15	2	0	0	0	0.027441	1	6128	6128		45.952	0	1	665800			927	12752	679	680	1307	1307					0.07798039576823612
AIITNRQL	8	Unmodified	_AIITNRQL_					0	0	0			REV__ENST00000451384.6_2_2:98292117-98319261:+|nuORF	REV__ENST00000451384.6_2_2:98292117-98319261:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	464.782470703125	2	464.782359	927.550165	-0.73466	-0.00034146	0.49645	0.00023074	-0.23822	-0.00011072	464.78252171693356	52.634	1.4106	49.426	49.094	50.505	-3.208					56	27	3	0	0	0	0.64026	1	3183	3183		55.504	0.72789	1	665340	+		928	23376	680	681	1308	1308					0.08349180025709302
AIKAVLADNT	10	Unmodified	_AIKAVLADNT_					0	0	0		tr|A0A7D6ZFR6|A0A7D6ZFR6_9CLOTDUF1659domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16115PE=4SV=1	tr|A0A7D6ZFR6|A0A7D6ZFR6_9CLOTDUF1659domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16115PE=4SV=1	tr|A0A7D6ZFR6|A0A7D6ZFR6_9CLOTDUF1659domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16115PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.2938537597656	2	508.292756	1014.57096	0.075787	3.8522E-05	0.90398	0.00045949	0.97976	0.00049801	508.29328790385733	38.324	1.4878	35.397	35.007	36.495	-2.9264					57	29	3	0	0	0	0.44431	1	1481	1481		62.107	3.3255	1	183680			929	35521	681	682	1309	1309					0.06425725614690236
AIKAVLADNT	10	Unmodified	_AIKAVLADNT_					0	0	0		tr|A0A7D6ZFR6|A0A7D6ZFR6_9CLOTDUF1659domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16115PE=4SV=1	tr|A0A7D6ZFR6|A0A7D6ZFR6_9CLOTDUF1659domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16115PE=4SV=1	tr|A0A7D6ZFR6|A0A7D6ZFR6_9CLOTDUF1659domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16115PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	508.292756	1014.57096	-1.863	-0.00094697	3.6743	0.0018676	1.8113	0.00092067	508.29434788165537	38.07	1.2852	35.36	35.075	36.36	-2.7097	-0.018462	0.0019472	NaN	62.107	37	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45524			930	35521	681	682							0.06425725614690236
AIKDRLPRV	9	Unmodified	_AIKDRLPRV_					0	0	0			REV__ENSG00000154358|ENST00000680850|OBSCN	REV__ENSG00000154358|ENST00000680850|OBSCN	MULTI-MSMS	OvCa9_classI_Rep2	2	534.3369750976562	2	534.337833	1066.66111	-1.8836	-0.0010065	1.4667	0.00078373	-0.4169	-0.00022277	534.3385363027232	49.37	2.527	46.609	45.829	48.356	-2.7603					129	50	4	0	0	0	0.56889	1	3160	3160		35.618	2.1027	1	911830	+		931	20380	682	683	1310	1310					0.1304481973379552
AIKKKKPAFLV	11	Unmodified	_AIKKKKPAFLV_					0	0	0		ENSG00000107020|ENST00000223864|PLGRKT	ENSG00000107020|ENST00000223864|PLGRKT	ENSG00000107020|ENST00000223864|PLGRKT	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.90850830078125	3	414.948064	1241.82236	0.23967	9.945E-05	0.32021	0.00013287	0.55988	0.00023232	414.948397675232	42.526	0.29702	42.526	42.412	42.709	0					10	6	2	0	0	0	0.026221	1	2753	2753		14.086	0	1	61766			932	2581	683	684	1311	1311					0.2111256904702259
AIKLRPIAVIK	11	Unmodified	_AIKLRPIAVIK_					0	0	0		ENSG00000100220|ENST00000216038|RTCB	ENSG00000100220|ENST00000216038|RTCB	ENSG00000100220|ENST00000216038|RTCB	MULTI-SECPEP	OvCa99_classI_Rep5	1	611.2659912109375	2	611.423908	1220.83326	2.9338	0.0017938	-2.7684	-0.0016926	0.16545	0.00010116	611.4224112678738	86.469	0.16322	86.469	86.389	86.553	0					5	3	2	0	0	0	0.026521	1	9130	9130		2.5243	0	1	91325			933	2027	684	685	1312	1312					0.23167971421298716
AIKQASSETP	10	Unmodified	_AIKQASSETP_					0	0	0		nc|ENSG00000131374|Q92609|TBC1D5;ENSG00000131374|ENST00000696125|TBC1D5	nc|ENSG00000131374|Q92609|TBC1D5	nc|ENSG00000131374|Q92609|TBC1D5	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.272705078125	2	516.272021	1030.52949	-0.83522	-0.0004312	1.5811	0.00081628	0.74589	0.00038508	516.2724179692997	79.955	1.37	77.203	77.034	78.404	-2.7514					63	27	3	0	0	0	0.41408	1	6532	6532		66.429	4.738	1	944990			934	4058	685	686	1313	1313					0.01544544855391905
AIKRKRAAR	9	Unmodified	_AIKRKRAAR_					0	0	0			REV__ENST00000520294.5_1_8:109476316-109498824:+|nuORF	REV__ENST00000520294.5_1_8:109476316-109498824:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.7794189453125	2	535.356891	1068.69923	0.48413	0.00025918	2.0902	0.001119	2.5743	0.0013782	535.3579740347598	72.538	0.39009	72.538	72.333	72.723	0					17	9	2	0	0	0	0.027462	1	7075	7075		42.396	9.5837	1	316120	+		935	27054	686	687	1314	1314					0.16762750439102092
AIKTQLKRK	9	Unmodified	_AIKTQLKRK_					0	0	0		ENSG00000216937|ENST00000639629|CCDC7	ENSG00000216937|ENST00000639629|CCDC7	ENSG00000216937|ENST00000639629|CCDC7	MULTI-MSMS	OvCa9_classI_Rep2	2	543.3604125976562	2	543.361308	1084.70806	-0.87734	-0.00047672	0.68604	0.00037277	-0.1913	-0.00010395	543.3615318559256	32.393	0.98863	29.683	29.431	30.42	-2.7097					49	19	3	0	0	0	0.55588	1	1084	1084		37.159	1.5408	1	167070			936	9215	687	688	1315	1315					0.16909679284913182
AILAAFIFS	9	Unmodified	_AILAAFIFS_					0	0	0		tr|A0A553SI65|A0A553SI65_NIACIPBP1Afamilypenicillin-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_14170PE=4SV=1	tr|A0A553SI65|A0A553SI65_NIACIPBP1Afamilypenicillin-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_14170PE=4SV=1	tr|A0A553SI65|A0A553SI65_NIACIPBP1Afamilypenicillin-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_14170PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	476.77642822265625	2	476.778754	951.542954	1.2649	0.00060308	-2.6449	-0.001261	-1.38	-0.00065794	476.7758510903552	113.82	1.6266	112.75	112.3	113.93	-1.0726					103	31	5	0	0	0	0.22913	1	8420	8420		71.378	5.5747	1	578600			937	33349	688	689	1316	1316					0.06524447425272228
AILDAILAKD	10	Unmodified	_AILDAILAKD_					0	0	0		tr|A0A553SJQ2|A0A553SJQ2_NIACIS-adenosylmethioninesynthaseOS=NialliacirculansOX=1397GN=metKPE=3SV=1	tr|A0A553SJQ2|A0A553SJQ2_NIACIS-adenosylmethioninesynthaseOS=NialliacirculansOX=1397GN=metKPE=3SV=1	tr|A0A553SJQ2|A0A553SJQ2_NIACIS-adenosylmethioninesynthaseOS=NialliacirculansOX=1397GN=metKPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.7841186523438	2	521.810782	1041.60701	0.84043	0.00043855	1.8894	0.00098592	2.7298	0.0014245	521.8116732875379	90.77	0.39903	90.77	90.577	90.976	0					17	9	2	0	0	0	0.026994	1	9758	9758		40.778	30.513	1	1543000			938	33528	689	690	1317	1317					0.0878718279154782
AILDKTTNK	9	Unmodified	_AILDKTTNK_					0	0	0		ENSG00000153250|ENST00000348849|RBMS1;nc|ENSG00000153250|P29558-2|RBMS1;ENSG00000076067|ENST00000262031|RBMS2	ENSG00000153250|ENST00000348849|RBMS1	ENSG00000153250|ENST00000348849|RBMS1	MSMS	OvCa9_classI_Rep2	2	502.2935791015625	2	502.292756	1002.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.631	1	36.922	36.422	37.422	-2.7097								0	0	0	0.098766	1	1945	1945		71.296	2.811	1				939	5672	690	691	1318	1318					0.06977725614717656
AILDKTTNK	9	Unmodified	_AILDKTTNK_					0	0	0		ENSG00000153250|ENST00000348849|RBMS1;nc|ENSG00000153250|P29558-2|RBMS1;ENSG00000076067|ENST00000262031|RBMS2	ENSG00000153250|ENST00000348849|RBMS1	ENSG00000153250|ENST00000348849|RBMS1	MSMS	OvCa9_classI_Rep2	2	502.2926940917969	2	502.292756	1002.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.667	1	36.957	36.457	37.457	-2.7097								0	0	0	0.07114	1	1949	1949		75.043	21.692	1				940	5672	690	691	1319	1319					0.06977725614717656
AILEYAQIK	9	Unmodified	_AILEYAQIK_					0	0	0		tr|A0A553SIU6|A0A553SIU6_NIACIComFfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15555PE=4SV=1	tr|A0A553SIU6|A0A553SIU6_NIACIComFfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15555PE=4SV=1	tr|A0A553SIU6|A0A553SIU6_NIACIComFfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15555PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	524.8062133789062	2	524.8055	1047.59645	-1.0909	-0.00057252	-1.8521	-0.00097202	-2.9431	-0.0015445	524.8041430606991	117.22	1.2891	117.09	116.96	118.25	-0.12869					58	25	3	0	0	0	0.22961	1	11223	11223		71.296	4.8664	1	262990			941	33427	691	692	1320	1320					0.07455200137110296
AILFTLTLQ	9	Unmodified	_AILFTLTLQ_					0	0	0		ENSG00000254440|ENST00000527246|PBOV1	ENSG00000254440|ENST00000527246|PBOV1	ENSG00000254440|ENST00000527246|PBOV1	MULTI-MSMS	OvCa9_classI_Rep2	2	510.30975341796875	2	510.310418	1018.60628	0.72188	0.00036838	-1.0996	-0.00056114	-0.37773	-0.00019276	510.3097721938746	126.6	2.2195	126.37	126.05	128.27	-0.2359					111	44	5	0	0	0	0.31747	1	12402	12402		60.972	5.4677	1	879330			942	9444	692	693	1321	1321					0.09772388142516775
AILFTLTLQ	9	Unmodified	_AILFTLTLQ_					0	0	0		ENSG00000254440|ENST00000527246|PBOV1	ENSG00000254440|ENST00000527246|PBOV1	ENSG00000254440|ENST00000527246|PBOV1	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.30963134765625	2	510.310418	1018.60628	-0.60085	-0.00030662	-0.011383	-5.809E-06	-0.61223	-0.00031243	510.31033129324646	127.85	1.922	126.42	126.09	128.01	-1.4357					108	37	5	0	0	0	0.31747	1	12302	12302		60.972	5.4677	1	1190100			943	9444	692	693	1322	1322					0.09772388142516775
AILGYSVAVIS	11	Unmodified	_AILGYSVAVIS_					0	0	0			REV__ENSG00000171051|ENST00000304748|FPR1	REV__ENSG00000171051|ENST00000304748|FPR1	MULTI-SECPEP	OvCa9_classI_Rep3	3	545.8291015625	2	546.818607	1091.62266	-1.3115	-0.00071716	0.94639	0.0005175	-0.36512	-0.00019965	546.8185753089965	96.391	0.71867	94.562	94.369	95.088	-1.8286					31	13	3	0	0	0	0.025416	1	6395	6395		34.173	0	1	35937	+		944	21588	693	694	1323	1323					0.08051469308611559
AILIGIKAH	9	Unmodified	_AILIGIKAH_					0	0	0			REV__tr|A0A7D6VX67|A0A7D6VX67_9CLOTMethioninegamma-lyasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10815PE=4SV=1	REV__tr|A0A7D6VX67|A0A7D6VX67_9CLOTMethioninegamma-lyasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10815PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	469.25408935546875	2	468.30547	934.596387	-0.89586	-0.00041954	0.6019	0.00028187	-0.29396	-0.00013766	468.3057186387567	86.343	1.1581	84.123	83.885	85.043	-2.2204					45	22	4	0	0	0	0.027456	1	5174	5174		26.796	8.4717	1	182510	+		945	31766	694	695	1324	1324					0.12647244927791235
AILKHKVLE	9	Unmodified	_AILKHKVLE_					0	0	0			REV__ENST00000511920.1_1_5:96514654-96518862:-|nuORF	REV__ENST00000511920.1_1_5:96514654-96518862:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.2859497070312	2	525.837134	1049.65972	0.55065	0.00028955	-1.0147	-0.00053359	-0.46408	-0.00024403	525.8364685472925	112.78	1.1842	112.65	112.28	113.46	-0.12174					62	23	4	0	0	0	0.027462	1	10771	10771		24.519	0	1	121640	+		946	16730	695	696	1325	1325					0.1368718564503979
AILMIPLEV	9	Unmodified	_AILMIPLEV_					0	0	0			REV__tr|A0A553ST65|A0A553ST65_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_04155PE=4SV=1	REV__tr|A0A553ST65|A0A553ST65_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_04155PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	499.8041687011719	2	499.801371	997.58819	2.9668	0.0014828	0.34183	0.00017084	3.3086	0.0016537	499.80144783197306	25.905	0.3849	23.195	23.033	23.418	-2.7097					15	9	2	0	0	0	0.71475	1	327	327		12.959	0	1	25775	+		947	30922	696	697	1326	1326					0.08929929896169142
AILPNRVV	8	Unmodified	_AILPNRVV_					0	0	0			REV__ENSG00000100249|ENST00000216071|C22orf31	REV__ENSG00000100249|ENST00000216071|C22orf31	MULTI-MSMS	OvCa99_classI_Rep5	1	441.283203125	2	441.281995	880.549437	2.9895	0.0013192	-0.42296	-0.00018664	2.5665	0.0011326	441.28165021860565	93.084	0.8693	93.084	92.762	93.632	0					43	20	3	0	0	0	0.57878	1	10097	10097		68.485	2.6815	1	4282600	+		948	17387	697	698	1327	1327					0.10438385376664883
AILPNRVV	8	Unmodified	_AILPNRVV_					0	0	0			REV__ENSG00000100249|ENST00000216071|C22orf31	REV__ENSG00000100249|ENST00000216071|C22orf31	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	441.281995	880.549437	2.9895	0.0013192	-0.42296	-0.00018664	2.5665	0.0011326	441.28165021860565	93.084	0.8693	93.084	92.762	93.632	0	0	0	NaN	68.485	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4282600	+		949	17387	697	698							0.10438385376664883
AILPRLAILP	10	Unmodified	_AILPRLAILP_					0	0	0		ENSG00000131019|ENST00000367339|ULBP3	ENSG00000131019|ENST00000367339|ULBP3	ENSG00000131019|ENST00000367339|ULBP3	MULTI-MSMS	OvCa9_classI_Rep2	2	538.86328125	2	538.863152	1075.71175	-0.23326	-0.0001257	-0.99858	-0.0005381	-1.2318	-0.00066379	538.862877379651	131.84	7.1203	131.62	131.3	138.42	-0.22697					401	145	6	0	0	0	0.71192	1	13678	13678		29.15	6.1071	1	12803000			950	4037	698	699	1328	1328					0.17692349058779655
AILQLQENN	9	Unmodified	_AILQLQENN_					0	0	0		ENSG00000149403|ENST00000527524|GRIK4;ENST00000454993.6_1_19:42503025-42546997:-|nuORF;ENSG00000105737|ENST00000593562|GRIK5;nc|ENSG00000105737|Q16478-2|GRIK5	ENSG00000149403|ENST00000527524|GRIK4	ENSG00000149403|ENST00000527524|GRIK4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.829345703125	2	521.780013	1041.54547	-1.6763	-0.00087464	2.0593	0.0010745	0.383	0.00019984	521.7807822748098	107.03	0.89349	105.15	104.64	105.54	-1.8785					42	16	3	0	0	0	0.027232	1	9746	9746		76.774	0	1	43705			951	5456	699	700	1329	1329					0.026362510922808724
AILQPYDY	8	Unmodified	_AILQPYDY_					0	0	0		tr|A0A7D6ZE55|A0A7D6ZE55_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12375PE=4SV=1	tr|A0A7D6ZE55|A0A7D6ZE55_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12375PE=4SV=1	tr|A0A7D6ZE55|A0A7D6ZE55_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12375PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	491.76849365234375	2	491.74765	981.480748	-0.64964	-0.00031946	-3.1644	-0.0015561	-3.8141	-0.0018756	491.74594704461106	68.119	0.8865	65.458	65.041	65.927	-2.661					28	17	2	0	0	0	0.028476	1	5329	5329		79.939	26.588	1	34833			952	35476	700	701	1330	1330					-0.010733237137287688
AILTRTTDI	9	Unmodified	_AILTRTTDI_					0	0	0		ENST00000526551.5_1_11:124746819-124748211:+|nuORF	ENST00000526551.5_1_11:124746819-124748211:+|nuORF	ENST00000526551.5_1_11:124746819-124748211:+|nuORF	MSMS	OvCa9_classI_Rep2	2	502.2938537597656	2	502.292756	1002.57096	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.723	1	37.014	36.514	37.514	-2.7097								0	0	0	0.16997	1	1956	1956		51.335	5.3632	1				953	13219	701	702	1331	1331					0.06977725614717656
AILVAPCLVL	10	Unmodified	_AILVAPCLVL_					0	0	0		ENSG00000182070|ENST00000380367|OR52A1	ENSG00000182070|ENST00000380367|OR52A1	ENSG00000182070|ENST00000380367|OR52A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.3198547363281	2	506.317189	1010.61982	-0.043025	-2.1785E-05	3.0689	0.0015538	3.0259	0.0015321	506.3186788425481	59.763	1.7305	56.371	56.002	57.732	-3.392					100	34	4	0	0	0	0.65806	1	4047	4047		35.201	2.3883	1	2002600			954	7965	702	703	1332	1332					0.11493922650095101
AILVARGAI	9	Unmodified	_AILVARGAI_					0	0	0			REV__nc|ENSG00000183207|Q9Y230-2|RUVBL2	REV__nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.2749938964844	2	442.28982	882.565087	3.4077	0.0015072	-1.1162	-0.00049369	2.2915	0.0010135	442.28920149918986	80.117	0.79517	80.117	79.907	80.702	0					30	18	3	0	0	0	0.027456	1	8208	8208		38.806	12.01	1	865940	+		955	22348	703	704	1333	1333					0.11910671893701874
AIMRSPQMV	9	Unmodified	_AIMRSPQMV_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.769287109375	2	516.77008	1031.52561	0.184	9.5088E-05	0.20117	0.00010396	0.38517	0.00019904	516.7701743695194	72.541	0.55063	72.541	72.291	72.842	0					25	13	2	0	0	0	0.40818	1	7063	7063		51.193	4.4263	1	2473900			956	6867	704	705	1334	1334					0.01110460556333237
AINLFIIGDI	10	Unmodified	_AINLFIIGDI_					0	0	0		tr|A0A7D7A118|A0A7D7A118_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13565PE=4SV=1	tr|A0A7D7A118|A0A7D7A118_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13565PE=4SV=1	tr|A0A7D7A118|A0A7D7A118_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13565PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.3004760742188	2	544.82115	1087.62775	-1.3625	-0.00074232	-1.4983	-0.0008163	-2.8608	-0.0015586	544.8199741668064	92.914	1.0948	90.407	90.01	91.105	-2.5072					41	21	3	0	0	0	0.02661	1	8130	8130		40.778	0	1	104400			957	36019	705	706	1335	1335					0.08743773171227076
AINNIAQEI	9	Unmodified	_AINNIAQEI_					0	0	0			REV__tr|A0A7D6ZV05|A0A7D6ZV05_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01865PE=3SV=1	REV__tr|A0A7D6ZV05|A0A7D6ZV05_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01865PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.2723083496094	2	493.269281	984.52401	-0.10647	-5.2519E-05	0.042674	2.105E-05	-0.063798	-3.1469E-05	493.26921613025036	77.343	0.87246	74.527	74.244	75.116	-2.8165					55	17	4	0	0	0	0.35444	1	6196	6196		56.721	5.3856	1	872090	+		958	32234	706	707	1336	1336					0.031128660635772576
AINPKLLQL	9	Unmodified	_AINPKLLQL_					0	0	0		DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	505.3236999511719	2	505.32386	1008.63317	-0.88225	-0.00044582	0.098992	5.0023E-05	-0.78326	-0.0003958	505.32395200705264	104.82	2.7808	104.24	103.97	106.75	-0.57639					155	55	5	0	0	0	0.055688	11	9723	9705;9711;9717;9723;9736;9748;9754;9760;9766;9772;9779		115.46	25.927	1	5956700			959	721	707	708	1337;1338;1339;1340;1341;1342;1343;1344;1345;1346;1347	1340					0.12919496753715976
AINPKLLQL	9	Unmodified	_AINPKLLQL_					0	0	0		DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	505.32354736328125	2	505.32386	1008.63317	-0.070853	-3.5804E-05	-0.98951	-0.00050002	-1.0604	-0.00053583	505.3234123415825	105.62	3.1767	104.28	103.99	107.17	-1.3482					167	61	5	0	0	0	0.071436	10	7487	7408;7420;7427;7439;7445;7457;7463;7469;7481;7487		106.42	23.322	1	6543100			960	721	707	708	1348;1349;1350;1351;1352;1353;1354;1355;1356;1357	1357					0.12919496753715976
AINPKLLQL	9	Unmodified	_AINPKLLQL_					0	0	0		DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.3248291015625	2	505.32386	1008.63317	-1.1336	-0.00057284	0.36205	0.00018295	-0.77156	-0.00038989	505.3241044168956	106.3	1.7009	104.28	103.95	105.65	-2.0161					120	32	5	0	0	0	0.055688	7	9681	9656;9668;9681;9693;9717;9729;9742		115.46	30.099	1	7078200			961	721	707	708	1358;1359;1360;1361;1362;1363;1364	1360					0.12919496753715976
AINRKDLVSIL	11	Unmodified	_AINRKDLVSIL_					0	0	0		tr|A0A7D6ZS93|A0A7D6ZS93_9CLOTPeptideABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14885PE=3SV=1	tr|A0A7D6ZS93|A0A7D6ZS93_9CLOTPeptideABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14885PE=3SV=1	tr|A0A7D6ZS93|A0A7D6ZS93_9CLOTPeptideABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14885PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	415.5887145996094	3	414.590717	1240.75032	0.1442	5.9785E-05	1.3441	0.00055725	1.4883	0.00061704	414.59113795409326	57.927	1.0549	54.582	54.342	55.397	-3.3449					54	20	4	0	0	0	0.025818	1	3857	3857		29.551	8.5185	1	119820			962	35732	708	709	1365	1365					0.13957609902649892
AIPAKAPVAPP	11	Unmodified	_AIPAKAPVAPP_					0	0	0			REV__ENSG00000165633|ENST00000332853|VSTM4	REV__ENSG00000165633|ENST00000332853|VSTM4	MULTI-MSMS	OvCa9_classI_Rep2	2	516.3136596679688	2	516.316035	1030.61752	-4.2539	-0.0021964	0.14413	7.4418E-05	-4.1098	-0.002122	516.3160035152533	156.4	1.1562	156.18	155.89	157.05	-0.22696					77	28	5	0	0	0	0.72244	1	15949	15949		21.96	2.5999	1	397210	+		963	21103	709	710	1366	1366					0.10343210236624145
AIPAPMLEPT	10	Unmodified	_AIPAPMLEPT_					0	0	0			REV__tr|A0A7D7A2C2|A0A7D7A2C2_9CLOTS-adenosylmethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metKPE=3SV=1	REV__tr|A0A7D7A2C2|A0A7D7A2C2_9CLOTS-adenosylmethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metKPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.8060913085938	2	520.27826	1038.54197	0.13184	6.8593E-05	2.7822	0.0014475	2.914	0.0015161	520.2797350756002	40.186	0.39709	37.477	37.352	37.749	-2.7097					13	7	2	0	0	0	0.026982	1	2040	2040		38.806	4.6336	1	20339	+		964	32532	710	711	1367	1367					0.024238649940798496
AIPGLMLRRL	10	Unmodified	_AIPGLMLRRL_					0	0	0		nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	MULTI-MSMS	OvCa99_classI_Rep5	1	570.3603515625	2	570.357711	1138.70087	0.88279	0.00050351	2.8631	0.001633	3.7459	0.0021365	570.3592234734417	157.3	1.2803	157.3	156.95	158.23	0					75	25	5	0	0	0	0.76627	1	18428	18428		23.042	0	1	587780			965	6405	711	712	1368	1368					0.13706623412872432
AIPGPGRALGL	11	Unmodified	_AIPGPGRALGL_					0	0	0		ENST00000577399.5_1_17:37558580-37558763:-|nuORF	ENST00000577399.5_1_17:37558580-37558763:-|nuORF	ENST00000577399.5_1_17:37558580-37558763:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.3110046386719	2	511.311284	1020.60801	0.54722	0.0002798	-1.2212	-0.00062442	-0.67399	-0.00034462	511.3104786635367	97.49	2.846	95.112	94.467	97.313	-2.3786					116	55	3	0	0	0	0.65947	1	8661	8661		39.253	8.7492	1	411720			966	13957	712	713	1369	1369					0.09853441951122477
AIPKKKMN	8	Unmodified	_AIPKKKMN_					0	0	0		ENST00000444273.6_1_6:56954967-57015704:+|nuORF;nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451	ENST00000444273.6_1_6:56954967-57015704:+|nuORF	ENST00000444273.6_1_6:56954967-57015704:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.2857971191406	2	465.28368	928.552807	-0.22765	-0.00010592	4.308	0.0020044	4.0803	0.0018985	465.2855847072139	143.15	1.5248	141.71	141.35	142.88	-1.4427					87	29	5	0	0	0	0.73626	1	14009	14009		33.516	9.3128	1	628240			967	2885	713	714	1370	1370					0.08567312159016183
AIPKVRLETI	10	Unmodified	_AIPKVRLETI_					0	0	0		ENSG00000074356|ENST00000389005|NCBP3	ENSG00000074356|ENST00000389005|NCBP3	ENSG00000074356|ENST00000389005|NCBP3	MULTI-MSMS	OvCa9_classI_Rep4_	4	570.3591918945312	2	570.360973	1138.70739	-3.6448	-0.0020789	-0.079296	-4.5227E-05	-3.7241	-0.0021241	570.3607585251723	152.95	1.1827	151.52	151.24	152.42	-1.435					78	29	4	0	0	0	0.7759	1	15150	15150		21.96	1.9631	1	189880			968	1510	714	715	1371	1371					0.14358839845226612
AIPLHRLATKY	11	Unmodified	_AIPLHRLATKY_					0	0	0		ENSG00000204347|ENST00000375366|BTBD17	ENSG00000204347|ENST00000375366|BTBD17	ENSG00000204347|ENST00000375366|BTBD17	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8825073242188	2	641.885147	1281.75574	-5.3554	-0.0034376	1.3541	0.00086916	-4.0013	-0.0025684	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.72485	1	13251	13251		17.468	0	1	804890			969	8971	715	716	1372	1372					0.12613333485114708
AIPMLVAGLK	10	Unmodified	_AIPMLVAGLK_					0	0	0		ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	OvCa9_classI_Rep2	2	506.8176574707031	2	506.814813	1011.61507	-0.93251	-0.00047261	4.1427	0.0020996	3.2102	0.001627	506.81667627584164	32.71	0.94407	30.001	29.778	30.722	-2.7097					25	18	2	0	0	0	0.79715	1	1117	1117		19.36	1.0356	1	45472			970	3901	716	717	1373	1373					0.10973038507336241
AIPTVQLATDF	11	Unmodified	_AIPTVQLATDF_					0	0	0		ENST00000414938.1_1_3:4792655-4792829:-|nuORF	ENST00000414938.1_1_3:4792655-4792829:-|nuORF	ENST00000414938.1_1_3:4792655-4792829:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	588.317138671875	2	588.318971	1174.62339	-0.86515	-0.00050898	-1.9826	-0.0011664	-2.8477	-0.0016754	588.3178156551718	47.322	1.787	44.612	44.142	45.929	-2.7097					114	35	4	0	0	0	0.52842	1	2877	2877		51.193	0	1	1251100			971	11585	717	718	1374	1374					0.043062639576419315
AIPTVQLATDF	11	Unmodified	_AIPTVQLATDF_					0	0	0		ENST00000414938.1_1_3:4792655-4792829:-|nuORF	ENST00000414938.1_1_3:4792655-4792829:-|nuORF	ENST00000414938.1_1_3:4792655-4792829:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	588.318603515625	2	588.318971	1174.62339	-0.14986	-8.8168E-05	-3.2056	-0.0018859	-3.3555	-0.0019741	588.3171667010001	47.453	2.2552	44.346	43.978	46.233	-3.1077					150	43	5	0	0	0	0.52842	1	2552	2552		51.193	3.5354	1	4526700			972	11585	717	718	1375	1375					0.043062639576419315
AIPVPRAVVE	10	Unmodified	_AIPVPRAVVE_					0	0	0		HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|382|3|anti-sense	HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|382|3|anti-sense	HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|382|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.291748046875	2	525.818941	1049.62333	-1.4885	-0.00078269	0.51072	0.00026855	-0.97779	-0.00051414	525.8189732485806	101.43	1.0993	99.823	99.294	100.39	-1.6053					30	20	2	0	0	0	0.026822	1	6912	6912		38.806	12.01	1	15881			973	14429	718	719	1376	1376					0.10050308748327552
AIQELESLI	9	Unmodified	_AIQELESLI_					0	0	0			REV__tr|A0A7D7A5P7|A0A7D7A5P7_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06990PE=3SV=1	REV__tr|A0A7D7A5P7|A0A7D7A5P7_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06990PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.26702880859375	2	508.28714	1014.55973	-1.1118	-0.0005651	0.29437	0.00014963	-0.81739	-0.00041547	508.2871735018948	95.801	1.2561	93.972	93.78	95.036	-1.8286					40	24	2	0	0	0	0.027247	1	6266	6266		69.628	0	1	118090	+		974	32641	719	720	1377	1377					0.05302903520566815
AIQELESLI	9	Unmodified	_AIQELESLI_					0	0	0			REV__tr|A0A7D7A5P7|A0A7D7A5P7_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06990PE=3SV=1	REV__tr|A0A7D7A5P7|A0A7D7A5P7_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06990PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	508.28714	1014.55973	-0.51416	-0.00026134	0.37411	0.00019015	-0.14006	-7.1188E-05	508.2867724674037	94.941	1.2324	93.842	93.46	94.692	-1.0995	-0.11501	0.00031159	NaN	69.628	63	24	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106090	+		975	32641	719	720							0.05302903520566815
AIQQKHLL	8	Unmodified	_AIQQKHLL_					0	0	0			REV__UVRAG-TMEM194A|1|fusion	REV__UVRAG-TMEM194A|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	475.79364013671875	2	475.792727	949.5709	0.67344	0.00032042	-1.0533	-0.00050117	-0.37989	-0.00018075	475.7921346062056	80.784	1.9819	78.462	78.081	80.062	-2.3226					116	38	6	0	0	0	0.56113	1	4465	4465		71.378	8.0716	1	2495500	+		976	23014	720	721	1378	1378					0.09409770405375184
AIQRHIHF	8	Unmodified	_AIQRHIHF_					0	0	0		ENSG00000152684|ENST00000274311|PELO	ENSG00000152684|ENST00000274311|PELO	ENSG00000152684|ENST00000274311|PELO	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.2370300292969	2	511.288143	1020.56173	2.028	0.0010369	0.80318	0.00041066	2.8312	0.0014476	511.2883480162004	122.09	1.4776	122.09	121.71	123.18	0					36	31	2	0	0	0	0.028476	1	14187	14187		28.254	8.8943	1	53445			977	5638	721	722	1379	1379					0.05227421839697399
AIRALRAL	8	Unmodified	_AIRALRAL_					0	0	0		nc|ENSG00000103932|Q9BWH6-2|RPAP1;ENSG00000103932|ENST00000304330|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	442.29681396484375	2	442.295436	882.57632	0.5638	0.00024937	-0.61538	-0.00027218	-0.05158	-2.2814E-05	442.294989843476	68.269	0.7341	64.779	64.478	65.212	-3.4902					42	14	4	0	0	0	0.52992	1	5057	5057		74.517	6.0319	1	373820			978	2344	722	723	1380	1380					0.13033493987848033
AIRALRAL	8	Unmodified	_AIRALRAL_					0	0	0		nc|ENSG00000103932|Q9BWH6-2|RPAP1;ENSG00000103932|ENST00000304330|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	442.295436	882.57632	1.0635	0.00047037	-1.2031	-0.00053212	-0.13962	-6.1752E-05	442.2947823128872	67.195	0.74276	64.534	64.248	64.991	-2.661	-0.092888	-0.00014729	NaN	74.517	38	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	339110			979	2344	722	723							0.13033493987848033
AIRASVIVPLS	11	Unmodified	_AIRASVIVPLS_					0	0	0		ENST00000565547.1_1_15:89630488-89631079:-|nuORF;ENST00000570120.1_1_15:89630896-89631097:-|nuORF	ENST00000565547.1_1_15:89630488-89631079:-|nuORF	ENST00000565547.1_1_15:89630488-89631079:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	563.3516235351562	2	563.353148	1124.69174	-0.047571	-2.6799E-05	-2.3732	-0.0013369	-2.4208	-0.0013637	563.351740858688	24.744	0.35242	24.744	24.536	24.888	0					11	6	2	0	0	0	0.70142	1	482	482		29.17	4.6509	1	56075			980	13821	723	724	1381	1381					0.13438553328182934
AIRESGVE	8	Unmodified	_AIRESGVE_					0	0	0		tr|A0A7D6VQ49|A0A7D6VQ49_9CLOTGDP-mannose4,6-dehydrataseOS=ClostridiumintestinaleOX=36845GN=gmdPE=3SV=1;tr|A0A7D6VQ10|A0A7D6VQ10_9CLOTGDP-mannose4,6-dehydrataseOS=ClostridiumintestinaleOX=36845GN=gmdPE=3SV=1	tr|A0A7D6VQ49|A0A7D6VQ49_9CLOTGDP-mannose4,6-dehydrataseOS=ClostridiumintestinaleOX=36845GN=gmdPE=3SV=1	tr|A0A7D6VQ49|A0A7D6VQ49_9CLOTGDP-mannose4,6-dehydrataseOS=ClostridiumintestinaleOX=36845GN=gmdPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	430.2179260253906	2	430.727249	859.439946	-0.43876	-0.00018899	0.8315	0.00035815	0.39274	0.00016916	430.7274500204002	43.437	0.89583	43.437	43.057	43.952	0					31	20	3	0	0	0	0.028476	1	2935	2935		16.473	9.2798	1	282990			981	34820	724	725	1382	1382					0.004603349666808754
AIRILGAI	8	Unmodified	_AIRILGAI_					0	0	0			REV__tr|A0A553SFG8|A0A553SFG8_NIACI2-keto-3-deoxygluconatepermeaseOS=NialliacirculansOX=1397GN=CEQ21_08815PE=4SV=1	REV__tr|A0A553SFG8|A0A553SFG8_NIACI2-keto-3-deoxygluconatepermeaseOS=NialliacirculansOX=1397GN=CEQ21_08815PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	413.77984619140625	2	413.779088	825.543623	-1.8118	-0.00074969	1.4951	0.00061866	-0.31666	-0.00013103	413.779634239223	108.21	1.1072	106.49	106.22	107.33	-1.7256					37	21	3	0	0	0	0.64377	1	9905	9905		54.765	7.9982	1	70397	+		982	29576	725	726	1383	1383					0.12387286864998259
AIRILGAI	8	Unmodified	_AIRILGAI_					0	0	0			REV__tr|A0A553SFG8|A0A553SFG8_NIACI2-keto-3-deoxygluconatepermeaseOS=NialliacirculansOX=1397GN=CEQ21_08815PE=4SV=1	REV__tr|A0A553SFG8|A0A553SFG8_NIACI2-keto-3-deoxygluconatepermeaseOS=NialliacirculansOX=1397GN=CEQ21_08815PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	413.779088	825.543623	0.64059	0.00026506	-0.48196	-0.00019943	0.15863	6.5636E-05	413.7788096155687	106.52	0.94376	106.21	105.93	106.87	-0.30836	-0.13303	-0.00040551	NaN	54.765	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65535	+		983	29576	725	726							0.12387286864998259
AIRILGAI	8	Unmodified	_AIRILGAI_					0	0	0			REV__tr|A0A553SFG8|A0A553SFG8_NIACI2-keto-3-deoxygluconatepermeaseOS=NialliacirculansOX=1397GN=CEQ21_08815PE=4SV=1	REV__tr|A0A553SFG8|A0A553SFG8_NIACI2-keto-3-deoxygluconatepermeaseOS=NialliacirculansOX=1397GN=CEQ21_08815PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	413.779088	825.543623	1.0655	0.00044087	-0.90651	-0.0003751	0.15897	6.5778E-05	413.77852433737695	107.6	0.99661	106.33	106.05	107.04	-1.267	-0.011047	-0.00075685	NaN	54.765	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69622	+		984	29576	725	726							0.12387286864998259
AIRILGAI	8	Unmodified	_AIRILGAI_					0	0	0			REV__tr|A0A553SFG8|A0A553SFG8_NIACI2-keto-3-deoxygluconatepermeaseOS=NialliacirculansOX=1397GN=CEQ21_08815PE=4SV=1	REV__tr|A0A553SFG8|A0A553SFG8_NIACI2-keto-3-deoxygluconatepermeaseOS=NialliacirculansOX=1397GN=CEQ21_08815PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	413.779088	825.543623	-1.8118	-0.00074969	1.4951	0.00061866	-0.31666	-0.00013103	413.779634239223	108.21	1.1072	106.49	106.22	107.33	-1.7256	0.14407	0.0012307	NaN	54.765	37	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70397	+		985	29576	725	726							0.12387286864998259
AIRTRNRRRG	10	Unmodified	_AIRTRNRRRG_					0	0	0			REV__DNMT1|p.D701Tfs*87|1|0.11|ENSG00000130816|chr19:10151514-10151515|-/CTTGACTTGCATGGTCCTCTGTTACTTAAAGT|frameshift_variant	REV__DNMT1|p.D701Tfs*87|1|0.11|ENSG00000130816|chr19:10151514-10151515|-/CTTGACTTGCATGGTCCTCTGTTACTTAAAGT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	628.3831176757812	2	628.38196	1254.74937	-3.3027	-0.0020754	3.9518	0.0024833	0.64909	0.00040788	628.3842124119614	147.07	3.8366	146.85	145.03	148.87	-0.22696					134	76	2	0	0	0	0.71173	1	14844	14844		29.17	2.4771	1	131170	+		986	16324	726	727	1384	1384					0.13218253096943045
AIRTVTSAL	9	Unmodified	_AIRTVTSAL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	OvCa9_classI_Rep2	2	466.2822265625	2	466.282192	930.549831	-0.039231	-1.8293E-05	-0.20183	-9.4109E-05	-0.24106	-0.0001124	466.2819887536188	72.808	2.7735	70.408	69.645	72.418	-2.3999					106	52	4	0	0	0	0.049969	4	5899	5899;5903;5909;5917		118.74	27.966	1	662210			987	1044	727	728	1385;1386;1387;1388	1385					0.08177760305829906
AIRTVTSAL	9	Unmodified	_AIRTVTSAL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.282958984375	2	466.282192	930.549831	-0.58453	-0.00027256	-0.15787	-7.3613E-05	-0.7424	-0.00034617	466.28204699867223	73.929	1.6264	70.698	70.386	72.012	-3.2308					105	33	4	0	0	0	0.060996	4	5747	5747;5756;5768;5783		112.41	24.714	1	1978700			988	1044	727	728	1389;1390;1391;1392	1389					0.08177760305829906
AIRTVTSAL	9	Unmodified	_AIRTVTSAL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	466.282192	930.549831	0.030256	1.4108E-05	-0.065101	-3.0355E-05	-0.034845	-1.6248E-05	466.2820231626102	72.794	1.2905	70.307	70.034	71.324	-2.4873	-0.1638	7.315E-05	NaN	118.74	63	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276240			989	1044	727	728							0.08177760305829906
AISAEHLPVR	10	Unmodified	_AISAEHLPVR_					0	0	0			REV__tr|A0A553SLL9|A0A553SLL9_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_20905PE=4SV=1	REV__tr|A0A553SLL9|A0A553SLL9_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_20905PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	546.8097534179688	2	546.811648	1091.60874	-0.3367	-0.00018411	-0.7984	-0.00043657	-1.1351	-0.00062068	546.811268925944	77.282	4.1237	75.493	75.051	79.174	-1.7894					214	80	5	0	0	0	0.33376	1	6505	6505		76.774	10.345	1	5234200	+		990	30239	728	729	1393	1393					0.06660236600191638
AISLLFAMLST	11	Unmodified	_AISLLFAMLST_					0	0	0		tr|A0A7D6W2U0|A0A7D6W2U0_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07360PE=4SV=1	tr|A0A7D6W2U0|A0A7D6W2U0_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07360PE=4SV=1	tr|A0A7D6W2U0|A0A7D6W2U0_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07360PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	583.8246459960938	2	583.828117	1165.64168	-2.806	-0.0016382	-4.2278	-0.0024683	-7.0338	-0.0041065	583.8256020803484	108.26	1.2557	106.54	106.27	107.52	-1.7256					73	24	4	0	0	0	0.26031	1	9909	9909		71.877	9.7701	1	542120			991	35437	729	730	1394	1394					0.06548682608013223
AISRAGLQH	9	Unmodified	_AISRAGLQH_					0	0	0		nc|ENSG00000157680|O75912|DGKI;ENSG00000157680|ENST00000614521|DGKI;DGKI|p.V482Pfs*14|1|0.17|ENSG00000157680|chr7:137585267-137585328|AGGTTCCAGCGATCTAGCTGTACAACTGTCCCATCTTCCACTTGACACAGGATCTTAGAAAC/-|frameshift_variant	nc|ENSG00000157680|O75912|DGKI	nc|ENSG00000157680|O75912|DGKI	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.8056640625	2	476.769783	951.525013	-0.53589	-0.0002555	0.22572	0.00010762	-0.31016	-0.00014788	476.76978326074317	41.342	1.0369	38.362	38.179	39.216	-2.9804					25	19	2	0	0	0	0.027426	1	1837	1837		63.306	13.865	1	45877			992	5907	730	731	1395	1395					0.047311252231338585
AISRPESLL	9	Unmodified	_AISRPESLL_					0	0	0		ENST00000511367.6_1_5:31532099-31532132:-|nuORF	ENST00000511367.6_1_5:31532099-31532132:-|nuORF	ENST00000511367.6_1_5:31532099-31532132:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.3021545410156	2	493.287474	984.560395	-0.42457	-0.00020944	1.3797	0.0006806	0.95515	0.00047116	493.2878679326976	91.956	1.1142	89.413	89.012	90.126	-2.5425					25	21	2	0	0	0	0.027461	1	8042	8042		49.442	17.487	1	73740			993	12983	731	732	1396	1396					0.06749742960300864
AISRPESLL	9	Unmodified	_AISRPESLL_					0	0	0		ENST00000511367.6_1_5:31532099-31532132:-|nuORF	ENST00000511367.6_1_5:31532099-31532132:-|nuORF	ENST00000511367.6_1_5:31532099-31532132:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	493.287474	984.560395	2.0115	0.00099224	-1.5875	-0.00078309	0.42399	0.00020915	493.2863298660958	90.618	0.96669	89.316	89.028	89.994	-1.302	-0.048464	-0.0014726	NaN	54.776	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31503			994	12983	731	732							0.06749742960300864
AISSVRLYI	9	Unmodified	_AISSVRLYI_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	OvCa99_classI_Rep5	1	511.3084411621094	2	511.305667	1020.59678	0.25732	0.00013157	-0.10471	-5.3541E-05	0.15261	7.8028E-05	511.30547244925776	103.39	0.87896	103.39	103.01	103.89	0					43	20	3	0	0	0	0.3076	1	11564	11564		62.107	6.6032	1	1312900			995	1102	732	733	1397	1397					0.08730619856999056
AISSVRLYI	9	Unmodified	_AISSVRLYI_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MATCH	OvCa9_classI_Rep2	2		2	511.305667	1020.59678	-0.7998	-0.00040894	-0.39517	-0.00020205	-1.195	-0.00061099	511.30541509101636	103.76	0.39481	103.18	102.98	103.37	-0.57639	-0.089523	0.00022796	NaN	62.107	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14224			996	1102	732	733							0.08730619856999056
AISSVRLYI	9	Unmodified	_AISSVRLYI_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	511.305667	1020.59678	-0.32771	-0.00016756	-1.8118	-0.0009264	-2.1396	-0.001094	511.3046441897181	105.26	0.44655	103.24	103.05	103.5	-2.0161	-0.029223	-0.0012207	NaN	62.107	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14407			997	1102	732	733							0.08730619856999056
AISYVALYV	9	Unmodified	_AISYVALYV_					0	0	0			REV__nc|ENSG00000036828|P41180-2|CASR	REV__nc|ENSG00000036828|P41180-2|CASR	MULTI-MSMS	OvCa9_classI_Rep3	3	499.7794189453125	2	499.781493	997.548434	-6.4353	-0.0032162	1.5057	0.00075253	-4.9296	-0.0024637	499.78234085456404	157.16	0.7756	155.99	155.76	156.54	-1.1707					23	17	3	0	0	0	0.6959	1	13561	13561		19.36	4.6959	1	18899	+		998	28710	733	734	1398	1398					0.04956126217086876
AISYVALYV	9	Unmodified	_AISYVALYV_					0	0	0			REV__nc|ENSG00000036828|P41180-2|CASR	REV__nc|ENSG00000036828|P41180-2|CASR	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	499.781493	997.548434	-6.4353	-0.0032162	1.5057	0.00075253	-4.9296	-0.0024637	499.78234085456404	157.16	0.7756	155.99	155.76	156.54	-1.1707	-0.032738	0.00026081	NaN	19.36	23	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18899	+		999	28710	733	734							0.04956126217086876
AITDKIFQI	9	Unmodified	_AITDKIFQI_					0	0	0		ENSG00000079739|ENST00000371084|PGM1;nc|ENSG00000079739|P36871-2|PGM1	ENSG00000079739|ENST00000371084|PGM1	ENSG00000079739|ENST00000371084|PGM1	MULTI-MSMS	OvCa9_classI_Rep3	3	524.8057861328125	2	524.8055	1047.59645	-0.80273	-0.00042128	-1.7483	-0.0009175	-2.551	-0.0013388	524.8041196356187	117.99	1.0403	116.96	116.79	117.83	-1.0324					61	20	4	0	0	0	0.1804	2	8885	8885;8897		79.713	10.689	1	347220			1000	1619	734	735	1399;1400	1399					0.07455200137133033
AITEKTRYPH	10	Unmodified	_AITEKTRYPH_					0	0	0			REV__tr|A0A553SI86|A0A553SI86_NIACIFAD:proteinFMNtransferaseOS=NialliacirculansOX=1397GN=CEQ21_14430PE=3SV=1	REV__tr|A0A553SI86|A0A553SI86_NIACIFAD:proteinFMNtransferaseOS=NialliacirculansOX=1397GN=CEQ21_14430PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	608.3253784179688	2	608.327662	1214.64077	-0.49708	-0.00030239	-3.1213	-0.0018988	-3.6184	-0.0022012	608.3258026969455	25.818	0.89825	25.818	25.594	26.492	0					46	17	5	0	0	0	0.49595	1	628	628		54.722	10.345	1	1851500	+		1001	29870	735	736	1401	1401					0.042036042833160536
AITKYGVKPHD	11	Unmodified	_AITKYGVKPHD_					0	0	0		nc|ENSG00000130176|P51911-2|CNN1;ENSG00000130176|ENST00000252456|CNN1	nc|ENSG00000130176|P51911-2|CNN1	nc|ENSG00000130176|P51911-2|CNN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	410.2278137207031	3	410.227667	1227.66117	1.4103	0.00057854	-0.79917	-0.00032784	0.61111	0.00025069	410.2273104732907	37.909	1.7383	35.016	34.541	36.28	-2.8925					77	34	4	0	0	0	0.68709	1	1450	1450		34.087	4.9164	1	312400			1002	3963	736	737	1402	1402					0.05644774943152697
AITLSGLKV	9	Unmodified	_AITLSGLKV_					0	0	0			REV__ENST00000317961.8_2_Y:21906437-21906611:-|nuORF	REV__ENST00000317961.8_2_Y:21906437-21906611:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	451.2546691894531	2	451.289485	900.564418	-0.044668	-2.0158E-05	0.026337	1.1886E-05	-0.018331	-8.2724E-06	451.2894278715664	55.833	0.53874	55.833	55.682	56.22	0					21	12	2	0	0	0	0.027462	1	4616	4616		27.882	4.8398	1	199920	+		1003	24417	737	738	1403	1403					0.11015832453995245
AITTRTQL	8	Unmodified	_AITTRTQL_					0	0	0			REV__ENST00000526990.1_1_11:65349145-65351290:+|nuORF	REV__ENST00000526990.1_1_11:65349145-65351290:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	452.266845703125	2	452.266542	902.51853	-0.69462	-0.00031416	0.68204	0.00030846	-0.012586	-5.6923E-06	452.26672891338814	34.78	1.6298	34.78	34.444	36.074	0					67	34	4	0	0	0	0.39692	1	1700	1700		88.643	6.3378	1	553100	+		1004	21773	738	739	1404	1404					0.06337187271753919
AITWRMRGW	9	Oxidation (M)	_AITWRM(Oxidation (M))RGW_		AITWRM(1)RGW		AITWRM(42)RGW	0	0	1			REV__ENST00000367879.8_1_1:165859450-165859519:+|nuORF	REV__ENST00000367879.8_1_1:165859450-165859519:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	596.80224609375	2	596.805842	1191.59713	-0.89416	-0.00053364	-3.6535	-0.0021804	-4.5477	-0.0027141	596.8034559111621	58.808	3.8363	56.028	54.29	58.126	-2.7801					174	74	4	0	0	0	0.50149	1	4279	4279		42.396	8.2236	1	374020	+		1005	24909	739	740	1405	1405		564			0.008997163051844836
AIVDKVPSV	9	Unmodified	_AIVDKVPSV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	OvCa99_classI_Rep5	1	464.28021240234375	2	464.279118	926.543683	1.3359	0.00062021	0.36866	0.00017116	1.7045	0.00079137	464.27927764595046	81.634	3.015	81.634	81.162	84.177	0					173	71	5	0	0	0	0.013371	5	8410	8383;8410;8441;8471;8528		158.07	62.607	1	69648000			1006	7955	740	741	1406;1407;1408;1409;1410	1407					0.07747242074333371
AIVDKVPSV	9	Unmodified	_AIVDKVPSV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	OvCa9_classI_Rep2	2	464.2781677246094	2	464.279118	926.543683	0.19215	8.9213E-05	-0.98339	-0.00045657	-0.79124	-0.00036735	464.2786690173774	82.784	2.5156	81.185	80.125	82.64	-1.5988					139	49	5	0	0	0	0.027568	17	7053	7025;7029;7035;7041;7047;7053;7059;7065;7071;7077;7084;7090;7096;7102;7108;7116;7122		138.06	55.757	1	3137000			1007	7955	740	741	1411;1412;1413;1414;1415;1416;1417;1418;1419;1420;1421;1422;1423;1424;1425;1426;1427	1416					0.07747242074333371
AIVDKVPSV	9	Unmodified	_AIVDKVPSV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	OvCa9_classI_Rep3	3	464.27972412109375	2	464.279118	926.543683	-1.1165	-0.00051838	0.21562	0.00010011	-0.90091	-0.00041828	464.27922622646685	83.429	2.3364	81.168	80.367	82.704	-2.261					163	48	5	0	0	0	0.011767	17	4805	4734;4739;4745;4751;4757;4763;4769;4776;4782;4788;4799;4805;4812;4819;4825;4831;4837		163.15	72.374	1	6280300			1008	7955	740	741	1428;1429;1430;1431;1432;1433;1434;1435;1436;1437;1438;1439;1440;1441;1442;1443;1444	1439					0.07747242074333371
AIVDKVPSV	9	Unmodified	_AIVDKVPSV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	OvCa9_classI_Rep4_	4	464.2803039550781	2	464.279118	926.543683	-0.068306	-3.1713E-05	-0.84582	-0.0003927	-0.91413	-0.00042441	464.2787690256217	83.709	1.907	81.046	80.388	82.295	-2.6629					133	39	5	0	0	0	0.011767	11	6973	6940;6949;6961;6973;6985;6997;7010;7025;7036;7049;7061		163.15	51.503	1	6446200			1009	7955	740	741	1445;1446;1447;1448;1449;1450;1451;1452;1453;1454;1455	1448					0.07747242074333371
AIVEIKRL	8	Unmodified	_AIVEIKRL_					0	0	0			REV__tr|A0A7D6ZWD2|A0A7D6ZWD2_9CLOTAminoacyl-histidinedipeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18500PE=4SV=1	REV__tr|A0A7D6ZWD2|A0A7D6ZWD2_9CLOTAminoacyl-histidinedipeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18500PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	471.3106689453125	2	471.310752	940.606951	-1.3467	-0.0006347	0.9748	0.00045943	-0.37187	-0.00017526	471.31115558776486	33.805	2.3785	31.096	30.823	33.201	-2.7097					116	47	5	0	0	0	0.73288	1	1320	1320		35.201	5.3592	1	1913400	+		1010	32281	741	742	1456	1456					0.13427227582246815
AIVGYSTILK	10	Unmodified	_AIVGYSTILK_					0	0	0			REV__ENST00000334667.6_1_8:56663524-56663593:-|nuORF	REV__ENST00000334667.6_1_8:56663524-56663593:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	533.3491821289062	2	532.82115	1063.62775	-0.12916	-6.8818E-05	-0.49077	-0.00026149	-0.61993	-0.00033031	532.8207472464567	94.532	0.75122	92.637	92.409	93.161	-1.8956					25	14	2	0	0	0	0.026752	1	6084	6084		35.618	8.8222	1	42885	+		1011	24570	742	743	1457	1457					0.0984777317123644
AIVKDVLLV	9	Unmodified	_AIVKDVLLV_					0	0	0		DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.F3496Wfs*92|1|0.14|ENSG00000197102|chr14:102034043-102034044|-/GACCTGGCAGCTGTCGAGGC|frameshift_variant;DYNC1H1|p.P2596Tfs*19|1|0.06|ENSG00000197102|chr14:102016936-102016937|-/A|frameshift_variant;DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	485.3214416503906	2	485.320786	968.627018	1.7074	0.00082862	0.54707	0.00026551	2.2544	0.0010941	485.3208414972816	108.84	0.87442	108.84	108.58	109.46	0					35	19	3	0	0	0	0.13504	1	12312	12312		87.696	32.92	1	968270			1012	767;768	743	744	1458	1458					0.14144978522188012
AIVLLSGRI	9	Unmodified	_AIVLLSGRI_					0	0	0		tr|A0A553SH09|A0A553SH09_NIACITeichuronicacidbiosynthesisproteinTuaEOS=NialliacirculansOX=1397GN=CEQ21_11935PE=4SV=1	tr|A0A553SH09|A0A553SH09_NIACITeichuronicacidbiosynthesisproteinTuaEOS=NialliacirculansOX=1397GN=CEQ21_11935PE=4SV=1	tr|A0A553SH09|A0A553SH09_NIACITeichuronicacidbiosynthesisproteinTuaEOS=NialliacirculansOX=1397GN=CEQ21_11935PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.3104248046875	2	471.310752	940.606951	0.63501	0.00029929	-0.99591	-0.00046938	-0.36089	-0.00017009	471.31024904441927	22.362	2.2823	21.024	20.523	22.806	-1.3386					219	69	5	0	0	0	0.18193	1	356	356		79.451	7.5735	1	1692100			1013	33217	744	745	1459	1459					0.13427227582246815
AIVLVLAMVE	10	Unmodified	_AIVLVLAMVE_					0	0	0		ENST00000417584.6_1_1:182357843-182360450:-|nuORF	ENST00000417584.6_1_1:182357843-182360450:-|nuORF	ENST00000417584.6_1_1:182357843-182360450:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2938842773438	2	529.319928	1056.6253	-1.0512	-0.00055642	3.6597	0.0019371	2.6085	0.0013807	529.8252380741638	34.327	0.47358	34.327	34.065	34.539	0					22	9	4	0	0	0	0.026982	1	1640	1640		30.504	6.3009	1	56298			1014	11623	745	746	1460	1460					0.09925601441909748
AIVRSLPSV	9	Unmodified	_AIVRSLPSV_					0	0	0		nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3;ATP2A3|p.S554Qfs*38|1|0.26|ENSG00000074370|chr17:3941540-3941540|A/-|frameshift_variant;ENST00000549840.1_1_12:110765624-110769845:+|nuORF;nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;nc|ENSG00000196296|O14983-3|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983|ATP2A1	nc|ENSG00000074370|Q93084-4|ATP2A3;nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000196296|O14983-3|ATP2A1	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	OvCa99_classI_Rep5	1	471.2940673828125	2	471.292559	940.570566	2.4294	0.0011449	-0.20983	-9.8892E-05	2.2195	0.0010461	471.29235563476493	84.229	0.58961	84.229	83.841	84.431	0					29	13	3	0	0	0	0.13504	1	8790	8790		87.696	2.5356	1	784090			1015	1511;7463;8587	746	747	1461	1461					0.09790350685534577
AIVTVPVIG	9	Unmodified	_AIVTVPVIG_					0	0	0			REV__tr|A0A7D7AB03|A0A7D7AB03_9CLOTLrgBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13380PE=4SV=1	REV__tr|A0A7D7AB03|A0A7D7AB03_9CLOTLrgBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13380PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	434.78155517578125	2	434.778754	867.542954	0.71682	0.00031166	2.0978	0.00091208	2.8146	0.0012237	434.77949683333657	61.541	1.6442	58.083	57.516	59.16	-3.4577					92	33	4	0	0	0	0.50066	2	4181	4181;4192		42.474	8.0654	1	673390	+		1016	32673	747	748	1462;1463	1462					0.10388447425282266
AIVWAVRA	8	Unmodified	_AIVWAVRA_					0	0	0		nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.6031188964844	2	443.268887	884.523222	-1.8822	-0.00083431	-2.6761	-0.0011862	-4.5583	-0.0020206	443.26755055848804	50.038	1.4957	46.896	46.558	48.054	-3.1416					49	28	3	0	0	0	0.028476	1	2884	2884		42.474	15.678	1	483260			1017	8721	748	749	1464	1464					0.07634116205178998
AIVYSIQNL	9	Unmodified	_AIVYSIQNL_					0	0	0		ENSG00000075089|ENST00000188312|ACTR6;ENST00000553038.5_1_12:100606046-100635559:+|nuORF	ENSG00000075089|ENST00000188312|ACTR6	ENSG00000075089|ENST00000188312|ACTR6	MULTI-MSMS	OvCa9_classI_Rep3	3	510.79022216796875	2	510.78985	1019.56515	-0.78383	-0.00040037	0.582	0.00029728	-0.20183	-0.00010309	510.7901493766308	134.85	1.379	133.73	133.41	134.79	-1.1226					41	27	2	0	0	0	0.53957	1	10896	10896		38.806	10.924	1	26734			1018	1523	749	750	1465	1465					0.056146271030456774
AIWVDNGIV	9	Unmodified	_AIWVDNGIV_					0	0	0			REV__tr|A0A7D6VN05|A0A7D6VN05_9CLOTCatB-relatedO-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16930PE=4SV=1	REV__tr|A0A7D6VN05|A0A7D6VN05_9CLOTCatB-relatedO-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16930PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3045349121094	2	493.768917	985.523281	-0.48244	-0.00023821	0.10302	5.087E-05	-0.37942	-0.00018734	493.76884625558114	115.15	0.69081	114.09	113.85	114.54	-1.055					26	13	3	0	0	0	0.027456	1	8558	8558		38.806	15.764	1	49530	+		1019	31153	750	751	1466	1466					0.0299407141451411
AIYGTRKFK	9	Unmodified	_AIYGTRKFK_					0	0	0		ENSG00000197629|ENST00000361050|MPEG1	ENSG00000197629|ENST00000361050|MPEG1	ENSG00000197629|ENST00000361050|MPEG1	MULTI-MSMS	OvCa9_classI_Rep2	2	542.3182373046875	2	542.319109	1082.62366	0.10352	5.6142E-05	-0.42471	-0.00023033	-0.32119	-0.00017419	542.3188254627427	43.05	1.4876	40.341	40.065	41.552	-2.7097					93	29	6	0	0	0	0.12515	6	2356	2350;2356;2361;2367;2373;2381		90.37	21.609	1	511100			1020	8732	751	752	1467;1468;1469;1470;1471;1472	1468					0.08565728468170164
AIYGTRKFK	9	Unmodified	_AIYGTRKFK_					0	0	0		ENSG00000197629|ENST00000361050|MPEG1	ENSG00000197629|ENST00000361050|MPEG1	ENSG00000197629|ENST00000361050|MPEG1	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.3192749023438	2	542.319109	1082.62366	-1.6828	-0.0009126	0.78563	0.00042606	-0.89715	-0.00048654	542.3196399873711	43.308	1.6865	40.301	39.958	41.645	-3.0074					116	31	6	0	0	0	0.059253	4	2072	2061;2072;2085;2099		113.41	58.635	1	1741500			1021	8732	751	752	1473;1474;1475;1476	1474					0.08565728468170164
AIYGYSILILI	11	Unmodified	_AIYGYSILILI_					0	0	0			REV__ENSG00000204704|ENST00000377175|OR2W1	REV__ENSG00000204704|ENST00000377175|OR2W1	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8695068359375	2	619.873382	1237.73221	-3.6059	-0.0022352	-2.8194	-0.0017477	-6.4253	-0.0039829	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.72244	1	13126	13126		21.96	1.9631	1	664560	+		1022	23182	752	753	1477	1477					0.12285474927966789
AIYKLRHSL	9	Unmodified	_AIYKLRHSL_					0	0	0		tr|A0A553SNX4|A0A553SNX4_NIACIFliA/WhiGfamilyRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=CEQ21_25370PE=4SV=1	tr|A0A553SNX4|A0A553SNX4_NIACIFliA/WhiGfamilyRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=CEQ21_25370PE=4SV=1	tr|A0A553SNX4|A0A553SNX4_NIACIFliA/WhiGfamilyRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=CEQ21_25370PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	550.2788696289062	2	550.832383	1099.65021	0.6022	0.00033171	-1.1286	-0.00062169	-0.52644	-0.00028998	550.8317272769376	93.101	1.6412	91.933	91.603	93.244	-1.168					67	31	3	0	0	0	0.027456	1	8448	8448		38.806	5.2906	1	156580			1023	33975	753	754	1478	1478					0.10437417359503343
AKACDLAKFE	10	Carbamidomethyl (C)	_AKAC(Carbamidomethyl (C))DLAKFE_	AKAC(1)DLAKFE		AKAC(65)DLAKFE		0	1	0		ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	MULTI-MSMS	OvCa9_classI_Rep2	2	576.7869262695312	2	576.789524	1151.56449	-1.6178	-0.00093316	-1.8337	-0.0010576	-3.4515	-0.0019908	576.7882490180596	102.71	1.5291	102.02	101.74	103.27	-0.68459					67	30	3	0	0	0	0.42082	1	9475	9475		65.465	7.2355	1	381850			1024	9183	754	755	1479	1479	91				-0.0052253560832014045
AKACSKLE	8	Unmodified	_AKACSKLE_					0	0	0		ENST00000528318.5_1_8:42716773-42751856:-|nuORF;nc|ENSG00000120925|Q96K19-2|RNF170	ENST00000528318.5_1_8:42716773-42751856:-|nuORF	ENST00000528318.5_1_8:42716773-42751856:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	425.76092529296875	2	425.228571	848.442588	0.40626	0.00017275	-3.8479	-0.0016363	-3.4417	-0.0014635	425.2267182159212	98.176	0.85864	95.797	95.418	96.277	-2.3786					33	16	3	0	0	0	0.028476	1	8694	8694		21.96	0	1	36212			1025	13252	755	756	1480	1480					0.01230467099969701
AKAELQRAM	9	Unmodified	_AKAELQRAM_					0	0	0		ENSG00000109061|ENST00000226207|MYH1	ENSG00000109061|ENST00000226207|MYH1	ENSG00000109061|ENST00000226207|MYH1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.79534912109375	2	509.279126	1016.5437	-0.42843	-0.00021819	-0.03068	-1.5625E-05	-0.45911	-0.00023381	509.78127857573855	39.287	0.2688	39.287	39.151	39.42	0					9	5	2	0	0	0	0.027461	1	2305	2305		25.574	0	1	41387			1026	2691	756	757	1481	1481					0.03608918802683547
AKAVKRSM	8	Oxidation (M)	_AKAVKRSM(Oxidation (M))_		AKAVKRSM(1)		AKAVKRSM(53)	0	0	1		ENST00000492097.5_1_3:141882642-141900319:-|nuORF;nc|ENSG00000175066|Q6ZS86-3|GK5;ENSG00000175066|ENST00000392993|GK5	ENST00000492097.5_1_3:141882642-141900319:-|nuORF	ENST00000492097.5_1_3:141882642-141900319:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	453.7623596191406	2	453.763112	905.511671	0.097579	4.4278E-05	-3.925	-0.001781	-3.8275	-0.0017368	453.7612483732571	51.397	0.62431	51.397	51.164	51.788	0					26	14	2	0	0	0	0.65062	1	3965	3965		53.351	7.3995	1	1405700			1027	7510	757	758	1482	1482		227			0.05513551119543081
AKCFATFKEK	10	Unmodified	_AKCFATFKEK_					0	0	0			REV__ENSG00000107317|ENST00000371625|PTGDS	REV__ENSG00000107317|ENST00000371625|PTGDS	MULTI-MSMS	OvCa9_classI_Rep3	3	586.8029174804688	2	586.810259	1171.60597	-8.2813	-0.0048596	-3.8217	-0.0022426	-12.103	-0.0071022	586.8077830487384	159.82	3.6388	158.49	157.91	161.55	-1.3316					146	73	3	0	0	0	0.75313	1	13830	13830		24.519	1.4767	1	151840	+		1028	17842	758	759	1483	1483					0.027026451509982508
AKDISDELKD	10	Unmodified	_AKDISDELKD_					0	0	0			REV__tr|A0A7D6ZZQ1|A0A7D6ZZQ1_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07065PE=4SV=1	REV__tr|A0A7D6ZZQ1|A0A7D6ZZQ1_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07065PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.7864379882812	2	567.287868	1132.56118	0.21303	0.00012085	0.42967	0.00024375	0.6427	0.0003646	567.2880002961464	63.072	1.0074	59.597	59.386	60.393	-3.475					30	20	3	0	0	0	0.026849	1	4466	4466		25.574	0	1	209490	+		1029	32418	759	760	1484	1484					0.0002049281868039543
AKDWGVKHWS	10	Unmodified	_AKDWGVKHWS_					0	0	0		tr|A0A553SMM9|A0A553SMM9_NIACIGlycosyltransferasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_22905PE=4SV=1	tr|A0A553SMM9|A0A553SMM9_NIACIGlycosyltransferasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_22905PE=4SV=1	tr|A0A553SMM9|A0A553SMM9_NIACIGlycosyltransferasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_22905PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	607.3121337890625	2	607.309272	1212.60399	1.1671	0.00070881	1.2704	0.00077154	2.4376	0.0014804	607.310005002933	89.7	1.9611	87.125	86.559	88.52	-2.575					96	38	3	0	0	0	0.58067	1	7686	7686		44.377	0	1	823340			1030	33851	760	761	1485	1485					0.006193524574428011
AKEELPGQSFD	11	Unmodified	_AKEELPGQSFD_					0	0	0		nc|ENSG00000101938|Q9BU40-3|CHRDL1;nc|ENSG00000101938|Q9BU40-5|CHRDL1;ENSG00000101938|ENST00000372042|CHRDL1	nc|ENSG00000101938|Q9BU40-3|CHRDL1	nc|ENSG00000101938|Q9BU40-3|CHRDL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	609.8113403320312	2	610.793318	1219.57208	2.0118	0.0012288	0.59833	0.00036545	2.6102	0.0015943	610.7936385140937	117.25	0.83735	117.25	116.86	117.7	0					30	17	3	0	0	0	0.025344	1	13460	13460		33.922	0	1	120330			1031	2206	761	762	1486	1486					-0.0289210480705151
AKEKEYWR	8	Unmodified	_AKEKEYWR_					0	0	0			REV__nc|ENSG00000130396|P55196-6|AFDN	REV__nc|ENSG00000130396|P55196-6|AFDN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.8687744140625	2	555.290548	1108.56654	1.3353	0.00074148	-4.3412	-0.0024106	-3.0059	-0.0016691	555.287844514195	36.386	0.64828	33.537	33.339	33.987	-2.849					22	12	3	0	0	0	0.028476	1	1240	1240		24.203	0	1	24931	+		1032	28847	762	763	1487	1487					0.01660261191796053
AKEYSGEIIA	10	Unmodified	_AKEYSGEIIA_					0	0	0			REV__tr|A0A553SM43|A0A553SM43_NIACI6-phospho-alpha-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_21870PE=3SV=1	REV__tr|A0A553SM43|A0A553SM43_NIACI6-phospho-alpha-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_21870PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.7650146484375	2	540.782222	1079.54989	-0.63497	-0.00034338	1.9895	0.0010759	1.3546	0.00073253	540.7824426711289	78.375	0.38351	75.558	75.312	75.696	-2.8165					9	7	2	0	0	0	0.026915	1	6307	6307		27.882	3.6795	1	74327	+		1033	30293	763	764	1488	1488					0.013297155152031337
AKFGKQIYSN	10	Unmodified	_AKFGKQIYSN_					0	0	0		ENST00000274457.4_1_5:114859130-114859301:-|nuORF	ENST00000274457.4_1_5:114859130-114859301:-|nuORF	ENST00000274457.4_1_5:114859130-114859301:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.3107299804688	2	578.31148	1154.60841	-2.9942	-0.0017316	0.85135	0.00049235	-2.1429	-0.0012392	578.3118346791387	149.42	1.2353	147.99	147.64	148.88	-1.4344					62	24	3	0	0	0	0.67931	1	14756	14756		32.812	2.4947	1	130810			1034	10018	764	765	1489	1489					0.037288168803115695
AKFIITIKN	9	Unmodified	_AKFIITIKN_					0	0	0			REV__ENSG00000174136|ENST00000513185|RGMB	REV__ENSG00000174136|ENST00000513185|RGMB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.2836303710938	2	524.331685	1046.64882	-0.21921	-0.00011494	-0.52005	-0.00027268	-0.73926	-0.00038762	524.3312421013615	115.59	0.74184	114.19	113.87	114.61	-1.3977					16	14	2	0	0	0	0.027462	1	10731	10731		49.442	10.635	1	16400	+		1035	21812	765	766	1490	1490					0.1273578327075029
AKFKDRIEHIE	11	Unmodified	_AKFKDRIEHIE_					0	0	0			REV__tr|A0A7D6ZV03|A0A7D6ZV03_9CLOTFe-onlynitrogenaseaccessoryproteinAnfOOS=ClostridiumintestinaleOX=36845GN=HZF06_13440PE=4SV=1	REV__tr|A0A7D6ZV03|A0A7D6ZV03_9CLOTFe-onlynitrogenaseaccessoryproteinAnfOOS=ClostridiumintestinaleOX=36845GN=HZF06_13440PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	462.59027099609375	3	462.589376	1384.7463	-0.091893	-4.2509E-05	-1.214	-0.0005616	-1.3059	-0.00060411	462.5887363163173	60.533	0.91758	60.533	60.238	61.156	0					61	21	4	0	0	0	0.61375	1	5279	5279		43.419	9.332	1	3857600	+		1036	32233	766	767	1491	1491					0.06931520408966207
AKFKDRIEHIE	11	Unmodified	_AKFKDRIEHIE_					0	0	0			REV__tr|A0A7D6ZV03|A0A7D6ZV03_9CLOTFe-onlynitrogenaseaccessoryproteinAnfOOS=ClostridiumintestinaleOX=36845GN=HZF06_13440PE=4SV=1	REV__tr|A0A7D6ZV03|A0A7D6ZV03_9CLOTFe-onlynitrogenaseaccessoryproteinAnfOOS=ClostridiumintestinaleOX=36845GN=HZF06_13440PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	462.589376	1384.7463	-0.091893	-4.2509E-05	-1.214	-0.0005616	-1.3059	-0.00060411	462.5887363163173	60.533	0.91758	60.533	60.238	61.156	0	0	0	NaN	43.419	61	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3857600	+		1037	32233	766	767							0.06931520408966207
AKGKKAVK	8	Unmodified	_AKGKKAVK_					0	0	0			REV__ENSG00000177504|ENST00000317103|VCX2	REV__ENSG00000177504|ENST00000317103|VCX2	MULTI-SECPEP	OvCa9_classI_Rep2	2	415.2116394042969	2	415.284537	828.554522	1.1885	0.00049357	-0.93947	-0.00039015	0.24903	0.00010342	415.2840262317831	43.461	0.89318	40.752	40.459	41.353	-2.7097					26	17	3	0	0	0	0.028476	1	2411	2411		12.207	0	1	26574	+		1038	21427	767	768	1492	1492					0.1333868923927639
AKGLNIVGL	9	Unmodified	_AKGLNIVGL_					0	0	0		tr|A0A553SP82|A0A553SP82_NIACICarbamoylphosphatesynthaselargechainOS=NialliacirculansOX=1397GN=carBPE=3SV=1	tr|A0A553SP82|A0A553SP82_NIACICarbamoylphosphatesynthaselargechainOS=NialliacirculansOX=1397GN=carBPE=3SV=1	tr|A0A553SP82|A0A553SP82_NIACICarbamoylphosphatesynthaselargechainOS=NialliacirculansOX=1397GN=carBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.71868896484375	2	442.781828	883.549102	-0.95115	-0.00042115	1.1648	0.00051576	0.21366	9.4604E-05	442.7820747974918	45.991	0.83506	42.919	42.666	43.501	-3.0724					25	15	3	0	0	0	0.027462	1	2447	2447		17.365	0.66	1	46509			1039	34014	768	769	1493	1493					0.10266965656808225
AKGLNIVGL	9	Unmodified	_AKGLNIVGL_					0	0	0		tr|A0A553SP82|A0A553SP82_NIACICarbamoylphosphatesynthaselargechainOS=NialliacirculansOX=1397GN=carBPE=3SV=1	tr|A0A553SP82|A0A553SP82_NIACICarbamoylphosphatesynthaselargechainOS=NialliacirculansOX=1397GN=carBPE=3SV=1	tr|A0A553SP82|A0A553SP82_NIACICarbamoylphosphatesynthaselargechainOS=NialliacirculansOX=1397GN=carBPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	442.781828	883.549102	1.353	0.00059908	-0.48153	-0.00021321	0.87146	0.00038587	442.7813419988247	45.733	0.55254	43.023	42.797	43.349	-2.7097	0.052232	-0.0010132	NaN	17.365	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10017			1040	34014	768	769							0.10266965656808225
AKGNLSSF	8	Unmodified	_AKGNLSSF_					0	0	0		ENST00000556866.5_1_14:77926071-77926140:+|nuORF	ENST00000556866.5_1_14:77926071-77926140:+|nuORF	ENST00000556866.5_1_14:77926071-77926140:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	412.2215270996094	2	412.21906	822.423567	1.9325	0.00079662	3.3289	0.0013722	5.2614	0.0021688	412.2203090945695	127.92	0.98666	127.69	127.44	128.43	-0.22697					42	19	3	0	0	0	0.72896	1	12528	12528		37.159	0.13063	1	133760			1041	13673	769	770	1494	1494					0.005252538005720453
AKGVAGAIPAA	11	Unmodified	_AKGVAGAIPAA_					0	0	0		ENSG00000087157|ENST00000262764|PGS1;nc|ENSG00000087157|Q32NB8-2|PGS1	ENSG00000087157|ENST00000262764|PGS1	ENSG00000087157|ENST00000262764|PGS1	MULTI-MSMS	OvCa99_classI_Rep5	1	463.2785949707031	2	463.276909	924.539266	0.22764	0.00010546	0.086957	4.0285E-05	0.3146	0.00014574	463.27668690619555	57.584	0.84433	57.584	57.309	58.153	0					31	19	3	0	0	0	0.43234	1	4855	4855		58.782	9.3404	1	1069800			1042	1765	770	771	1495	1495					0.07397777651419801
AKGVLLEPFV	10	Unmodified	_AKGVLLEPFV_					0	0	0		IP6K2|p.H29Afs*9|1|0.04|ENSG00000068745|chr3:48695207-48695208|-/C|frameshift_variant;IP6K2|p.G28Afs*12|1|0.03|ENSG00000068745|chr3:48695209-48695210|-/CACAGTG|frameshift_variant;nc|ENSG00000068745|Q9UHH9-3|IP6K2;nc|ENSG00000068745|Q9UHH9-6|IP6K2;nc|ENSG00000068745|Q9UHH9-2|IP6K2;nc|ENSG00000068745|Q9UHH9-4|IP6K2;nc|ENSG00000068745|Q9UHH9-5|IP6K2;ENSG00000068745|ENST00000328631|IP6K2	IP6K2|p.H29Afs*9|1|0.04|ENSG00000068745|chr3:48695207-48695208|-/C|frameshift_variant	IP6K2|p.H29Afs*9|1|0.04|ENSG00000068745|chr3:48695207-48695208|-/C|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.2597045898438	2	536.823692	1071.63283	0.045816	2.4595E-05	-2.7923	-0.001499	-2.7465	-0.0014744	536.8215268673713	86.303	0.60201	84.083	83.785	84.387	-2.2204					18	11	2	0	0	0	0.026891	1	5156	5156		39.253	18.416	1	21333			1043	1396	771	772	1496	1496					0.09988077033835907
AKHFYLGFL	9	Unmodified	_AKHFYLGFL_					0	0	0			REV__ENST00000431981.2_1_9:35786686-35786728:+|nuORF	REV__ENST00000431981.2_1_9:35786686-35786728:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.6334838867188	2	548.302927	1094.5913	-0.073418	-4.0255E-05	3.5849	0.0019656	3.5115	0.0019254	548.304552617788	32.179	0.54586	32.179	31.757	32.303	0					14	10	2	0	0	0	0.027462	1	1354	1354		17.365	0	1	68463	+		1044	25728	772	773	1497	1497					0.04778941065183062
AKHWSLDPFP	10	Unmodified	_AKHWSLDPFP_					0	0	0			REV__ENST00000305596.7_1_16:30363444-30363645:-|nuORF	REV__ENST00000305596.7_1_16:30363444-30363645:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.319091796875	2	599.306198	1196.59784	2.2067	0.0013225	0.87045	0.00052167	3.0772	0.0018442	599.306490987176	120.3	0.47041	120.3	120.09	120.56	0					31	11	4	0	0	0	0.026635	1	13829	13829		56.721	21.52	1	2262900	+		1045	24285	773	774	1498	1498					0.007408342258713674
AKIAIPTALN	10	Unmodified	_AKIAIPTALN_					0	0	0			REV__ENST00000462482.1_1_13:21729288-21750660:-|nuORF	REV__ENST00000462482.1_1_13:21729288-21750660:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.2926330566406	2	506.313492	1010.61243	-0.02172	-1.0997E-05	1.6712	0.00084614	1.6495	0.00083515	506.31399016258666	67.479	0.30493	67.479	67.337	67.642	0					11	7	2	0	0	0	0.026843	1	6332	6332		38.754	14.234	1	335830	+		1046	21091	774	775	1499	1499					0.10754906374017992
AKIEDLEKL	9	Unmodified	_AKIEDLEKL_					0	0	0		nc|ENSG00000152969|Q96N16|JAKMIP1;ENSG00000152969|ENST00000409021|JAKMIP1;nc|ENSG00000152969|Q96N16-6|JAKMIP1;nc|ENSG00000152969|Q96N16-7|JAKMIP1;nc|ENSG00000152969|Q96N16-5|JAKMIP1	nc|ENSG00000152969|Q96N16|JAKMIP1	nc|ENSG00000152969|Q96N16|JAKMIP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.8076782226562	2	529.808239	1057.60193	-1.312	-0.00069511	0.84604	0.00044824	-0.46596	-0.00024687	529.8086198814409	121.17	2.4767	119.82	119.54	122.02	-1.3479					138	48	5	0	0	0	0.44248	1	11515	11515		47.96	1.5027	1	1825800			1047	5652	775	776	1500	1500					0.07542878928961727
AKIFLVAAGI	10	Unmodified	_AKIFLVAAGI_					0	0	0			REV__ENSG00000183960|ENST00000328405|KCNH8	REV__ENSG00000183960|ENST00000328405|KCNH8	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.2781677246094	2	501.820953	1001.62735	1.046	0.00052493	-0.43525	-0.00021842	0.6108	0.00030651	501.820440298926	123.63	0.36238	123.63	123.47	123.83	0					10	7	2	0	0	0	0.026697	1	14246	14246		37.159	0	1	68928	+		1048	22395	776	777	1501	1501					0.1266039824205336
AKIILIHTL	9	Unmodified	_AKIILIHTL_					0	0	0		ENSG00000099219|ENST00000339450|ERMP1;nc|ENSG00000099219|Q7Z2K6-2|ERMP1	ENSG00000099219|ENST00000339450|ERMP1	ENSG00000099219|ENST00000339450|ERMP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.2835693359375	2	511.342052	1020.66955	1.9063	0.00097476	0.29872	0.00015275	2.205	0.0011275	511.3419943476141	134.48	0.44815	134.48	134.29	134.74	0					15	9	2	0	0	0	0.027462	1	15668	15668		29.15	0.89528	1	160850			1049	1961	777	778	1502	1502					0.1600437365042353
AKINCSWF	8	Unmodified	_AKINCSWF_					0	0	0		ENST00000519675.1_1_8:105521165-105601125:-|nuORF;LRP12|p.K202Tfs*48|1|0.03|ENSG00000147650|chr8:104497949-104497950|-/CAAACAGAACCCATCTACTTGGTAAGTA|frameshift_variant;LRP12|p.N447Tfs*41|1|0.17|ENSG00000147650|chr8:104497212-104497212|T/-|frameshift_variant;nc|ENSG00000147650|Q9Y561-2|LRP12;ENSG00000147650|ENST00000276654|LRP12	ENST00000519675.1_1_8:105521165-105601125:-|nuORF	ENST00000519675.1_1_8:105521165-105601125:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.2705078125	2	484.736563	967.458573	-0.76834	-0.00037244	3.2987	0.001599	2.5303	0.0012265	484.73803495957037	53.076	1.0546	49.868	49.553	50.607	-3.208					27	20	2	0	0	0	0.028476	1	3185	3185		42.474	17.024	1	42483			1050	5370	778	779	1503	1503					-0.02645826663126627
AKIPIINSVPF	11	Unmodified	_AKIPIINSVPF_					0	0	0			REV__ENST00000334982.8_1_20:20013985-20014090:+|nuORF	REV__ENST00000334982.8_1_20:20013985-20014090:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	400.2458190917969	3	400.244658	1197.71214	1.7086	0.00068384	1.4168	0.00056708	3.1254	0.0012509	400.2451090600217	45.267	0.51863	45.267	44.977	45.496	0					28	11	3	0	0	0	0.68709	1	3127	3127		34.087	5.5098	1	735840	+		1051	24574	779	780	1504	1504					0.12119723987984798
AKITINRPH	9	Unmodified	_AKITINRPH_					0	0	0		tr|A0A553SJQ4|A0A553SJQ4_NIACI1,4-dihydroxy-2-naphthoyl-CoAsynthaseOS=NialliacirculansOX=1397GN=menBPE=3SV=1	tr|A0A553SJQ4|A0A553SJQ4_NIACI1,4-dihydroxy-2-naphthoyl-CoAsynthaseOS=NialliacirculansOX=1397GN=menBPE=3SV=1	tr|A0A553SJQ4|A0A553SJQ4_NIACI1,4-dihydroxy-2-naphthoyl-CoAsynthaseOS=NialliacirculansOX=1397GN=menBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.2867431640625	2	525.314358	1048.61416	-0.14162	-7.4395E-05	-2.9189	-0.0015333	-3.0605	-0.0016077	525.3145254101495	113.37	0.1488	111.93	111.85	112	-1.4461					4	2	2	0	0	0	0.027462	1	10493	10493		21.96	1.013	1	3760.4			1052	33530	780	781	1505	1505					0.09179960182655122
AKKEPVKAPVK	11	Unmodified	_AKKEPVKAPVK_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	598.3180541992188	2	597.882073	1193.74959	-0.21066	-0.00012595	1.825	0.0010911	1.6143	0.00096518	598.3860196207805	109.16	0.24772	107.43	107.33	107.58	-1.7256					6	4	2	0	0	0	0.025912	1	10028	10028		29.17	15.716	1	14309	+		1053	28942;32737	781	782	1506	1506					0.16046815253571367
AKKFSKVPS	9	Unmodified	_AKKFSKVPS_					0	0	0			REV__ENST00000507810.5_1_5:111479536-111545647:-|nuORF	REV__ENST00000507810.5_1_5:111479536-111545647:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	496.3013916015625	2	496.300384	990.586216	1.2461	0.00061845	-1.3256	-0.00065787	-0.079436	-3.9424E-05	496.29955522437075	123.03	1.3483	121.99	121.68	123.03	-1.0377					64	25	3	0	0	0	0.53483	2	9539	9508;9539		39.253	5.7599	1	228980	+		1054	18903	782	783	1507;1508	1508					0.09054637202564209
AKKIKFVKNE	10	Unmodified	_AKKIKFVKNE_					0	0	0			REV__tr|A0A7D6VWY9|A0A7D6VWY9_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05970PE=3SV=1	REV__tr|A0A7D6VWY9|A0A7D6VWY9_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05970PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	602.87353515625	2	602.874248	1203.73394	0.39799	0.00023994	-0.97219	-0.00058611	-0.57421	-0.00034617	602.8736249948932	105.04	1.9216	103.03	102.69	104.61	-2.0161					116	37	5	0	0	0	0.58067	1	9508	9508		44.377	3.599	1	1590400	+		1055	31759	783	784	1509	1509					0.14022528736541062
AKKKAPCPGL	10	Unmodified	_AKKKAPCPGL_					0	0	0		nc|ENSG00000176273|Q2M3R5-2|SLC35G1;ENSG00000176273|ENST00000427197|SLC35G1	nc|ENSG00000176273|Q2M3R5-2|SLC35G1	nc|ENSG00000176273|Q2M3R5-2|SLC35G1	MULTI-MSMS	OvCa99_classI_Rep5	1	506.8036193847656	2	506.802237	1011.58992	-1.108	-0.00056155	-2.0521	-0.00104	-3.1601	-0.0016016	506.80106723706183	69.924	0.61402	69.924	69.672	70.286	0					33	14	3	0	0	0	0.53885	1	6671	6671		49.442	1.5259	1	2664800			1056	7597	784	785	1510	1510					0.08458983704770162
AKKKIPELL	9	Unmodified	_AKKKIPELL_					0	0	0		L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|101|2|sense	L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|101|2|sense	L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|101|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2760009765625	2	520.347335	1038.68012	0.70622	0.00036748	1.1126	0.00057892	1.8188	0.0009464	520.3476995704277	145.63	0.5874	145.63	145.39	145.98	0					18	11	2	0	0	0	0.027462	1	17002	17002		15.642	8.9063	1	44700			1057	14687	785	786	1511	1511					0.16232356304840323
AKKKKCIYI	9	Unmodified	_AKKKKCIYI_					0	0	0		ENST00000342374.4_1_20:43128471-43128573:-|nuORF	ENST00000342374.4_1_20:43128471-43128573:-|nuORF	ENST00000342374.4_1_20:43128471-43128573:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	547.3001098632812	2	547.841362	1093.66817	0.40543	0.00022211	4.1592	0.0022786	4.5646	0.0025007	547.8439871840268	113.89	0.78936	113.77	113.57	114.35	-0.11777					29	15	3	0	0	0	0.027462	1	10800	10800		24.203	3.7209	1	45808			1058	10578	786	787	1512	1512					0.1250841628998387
AKKKVTCAK	9	Carbamidomethyl (C)	_AKKKVTC(Carbamidomethyl (C))AK_	AKKKVTC(1)AK		AKKKVTC(82)AK		0	1	0		ENST00000321867.5_1_12:132406822-132407029:+|nuORF	ENST00000321867.5_1_12:132406822-132407029:+|nuORF	ENST00000321867.5_1_12:132406822-132407029:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3109130859375	2	517.312969	1032.61138	0.010128	5.2392E-06	-3.4744	-0.0017973	-3.4642	-0.0017921	517.3110169376656	31.938	1.2365	29.228	28.986	30.222	-2.7097					60	24	4	0	0	0	0.16562	1	1017	1017		82.241	12.613	1	305470			1059	10378	787	788	1513	1513	105				0.09638368733476455
AKKLAWPAPV	10	Unmodified	_AKKLAWPAPV_					0	0	0		ENSG00000012171|ENST00000616701|SEMA3B;nc|ENSG00000012171|Q13214-2|SEMA3B	ENSG00000012171|ENST00000616701|SEMA3B	ENSG00000012171|ENST00000616701|SEMA3B	MULTI-MSMS	OvCa9_classI_Rep3	3	540.8312377929688	2	540.831852	1079.64915	2.013	0.0010887	-2.9636	-0.0016028	-0.9506	-0.00051411	540.8302826822948	124.41	3.5435	123.37	123.03	126.57	-1.0377					194	67	5	0	0	0	0.64063	2	9646	9646;9701		37.159	1.9584	1	8697600			1060	972	788	789	1514;1515	1514					0.11251202990592901
AKKLQKELG	9	Unmodified	_AKKLQKELG_					0	0	0		MED12|p.K1768Qfs*3|1|0.17|ENSG00000184634|chrX:71136550-71136551|-/C|frameshift_variant;nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	MED12|p.K1768Qfs*3|1|0.17|ENSG00000184634|chrX:71136550-71136551|-/C|frameshift_variant	MED12|p.K1768Qfs*3|1|0.17|ENSG00000184634|chrX:71136550-71136551|-/C|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.80194091796875	2	507.818941	1013.62333	1.0748	0.00054581	-0.23161	-0.00011761	0.84321	0.0004282	507.81873981007374	85.384	0.73276	82.738	82.561	83.293	-2.6463					23	14	2	0	0	0	0.027462	1	7233	7233		6.7355	0	1	33989			1061	8177	789	790	1516	1516					0.11706308748318861
AKKSSISYQVM	11	Unmodified	_AKKSSISYQVM_					0	0	0		ENST00000577730.5_1_16:61935298-62055066:-|nuORF	ENST00000577730.5_1_16:61935298-62055066:-|nuORF	ENST00000577730.5_1_16:61935298-62055066:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	621.3942260742188	2	621.331556	1240.64856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	164.21	1	162.57	162.07	163.07	-1.6405								0	0	0	0.19439	1	16226	16226		31.634	0.10446	1				1062	13960	790	791	1517	1517					0.03785995488578919
AKKSSLCILL	10	Unmodified	_AKKSSLCILL_					0	0	0			REV__CPED1|p.D151G|1|0.12|ENSG00000106034|chr7:121046905-121046905|A/G|missense_variant	REV__CPED1|p.D151G|1|0.12|ENSG00000106034|chr7:121046905-121046905|A/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.3262329101562	2	538.330827	1074.6471	-6.8958	-0.0037122	-0.1249	-6.7239E-05	-7.0207	-0.0037795	538.3306472316852	159.34	1.4158	157.75	157.44	158.85	-1.5859					96	33	4	0	0	0	0.67931	1	15731	15731		32.812	3.6629	1	453340	+		1063	16232	791	792	1518	1518					0.11276406190495436
AKKVIELSM	9	Unmodified	_AKKVIELSM_					0	0	0		tr|A0A553SHE0|A0A553SHE0_NIACIATP-dependentClpproteaseATP-bindingsubunitOS=NialliacirculansOX=1397GN=CEQ21_12640PE=3SV=1	tr|A0A553SHE0|A0A553SHE0_NIACIATP-dependentClpproteaseATP-bindingsubunitOS=NialliacirculansOX=1397GN=CEQ21_12640PE=3SV=1	tr|A0A553SHE0|A0A553SHE0_NIACIATP-dependentClpproteaseATP-bindingsubunitOS=NialliacirculansOX=1397GN=CEQ21_12640PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.8032531738281	2	509.801903	1017.58925	2.0238	0.0010317	1.6092	0.00082039	3.633	0.0018521	509.80258654056354	136.53	4.9049	134.99	133.61	138.51	-1.5437					290	101	5	0	0	0	0.69123	1	13434	13434		20.947	1.587	1	173450			1064	33259	792	793	1519	1519					0.08116144265056846
AKKYIPKKG	9	Unmodified	_AKKYIPKKG_					0	0	0			REV__ENSG00000124145|ENST00000372733|SDC4	REV__ENSG00000124145|ENST00000372733|SDC4	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.8195190429688	2	516.831852	1031.64915	0.061169	3.1614E-05	-0.24126	-0.00012469	-0.1801	-9.308E-05	516.8315103976898	78.093	1.1573	76.328	76.014	77.171	-1.7649					36	22	3	0	0	0	0.027462	1	6583	6583		26.693	4.733	1	42652	+		1065	18665	793	794	1520	1520					0.13459202990588892
AKKYLLPKV	9	Unmodified	_AKKYLLPKV_					0	0	0		tr|A0A7D6ZIW7|A0A7D6ZIW7_9CLOTLonproteaseOS=ClostridiumintestinaleOX=36845GN=lonPE=2SV=1	tr|A0A7D6ZIW7|A0A7D6ZIW7_9CLOTLonproteaseOS=ClostridiumintestinaleOX=36845GN=lonPE=2SV=1	tr|A0A7D6ZIW7|A0A7D6ZIW7_9CLOTLonproteaseOS=ClostridiumintestinaleOX=36845GN=lonPE=2SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.3065185546875	2	530.349877	1058.6852	-0.37044	-0.00019646	4.4819	0.002377	4.1115	0.0021805	530.3523549145503	54.11	0.16378	54.11	54.008	54.172	0					6	3	2	0	0	0	0.027462	1	4336	4336		10.866	0	1	143840			1066	35629	794	795	1521	1521					0.15820660167446476
AKLAETNK	8	Unmodified	_AKLAETNK_					0	0	0			REV__tr|A0A7D6ZZM8|A0A7D6ZZM8_9CLOTM3familyoligoendopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20960PE=3SV=1	REV__tr|A0A7D6ZZM8|A0A7D6ZZM8_9CLOTM3familyoligoendopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20960PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	437.7328796386719	2	437.753267	873.491981	-0.7018	-0.00030722	0.65244	0.00028561	-0.049358	-2.1607E-05	437.75337836238145	53.737	1.4327	50.489	50.109	51.542	-3.2474					53	27	3	0	0	0	0.028476	1	3303	3303		58.782	0	1	162230	+		1067	32415	795	796	1522	1522					0.050174983804254225
AKLGGGGYT	9	Unmodified	_AKLGGGGYT_					0	0	0			REV__CAMTA1|p.V1621Gfs*12|1|0.03|ENSG00000171735|chr1:7751370-7751371|-/GGGACCACGTGGTTATTCAGCTGGAGTGGGTT|frameshift_variant	REV__CAMTA1|p.V1621Gfs*12|1|0.03|ENSG00000171735|chr1:7751370-7751371|-/GGGACCACGTGGTTATTCAGCTGGAGTGGGTT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	412.2213134765625	2	412.21906	822.423567	1.9325	0.00079662	3.3289	0.0013722	5.2614	0.0021688	412.2203090945695	127.92	0.98666	127.69	127.44	128.43	-0.22697					42	19	3	0	0	0	0.55588	1	12540	12540		37.159	0.13063	1	133760	+		1068	15735	796	797	1523	1523					0.005252538005606766
AKLGPVHKK	9	Unmodified	_AKLGPVHKK_					0	0	0			REV__USP45|p.N769H|1|0.04|ENSG00000123552|chr6:99437255-99437255|T/G|missense_variant	REV__USP45|p.N769H|1|0.04|ENSG00000123552|chr6:99437255-99437255|T/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.3135070800781	2	489.316369	976.618185	-3.028	-0.0014817	-1.2985	-0.00063537	-4.3265	-0.002117	489.31563425823117	151.49	1.5662	150.06	149.67	151.24	-1.4344					103	34	4	0	0	0	0.69895	1	15025	15025		18.324	3.6603	1	763840	+		1069	32750	797	798	1524	1524					0.12894049676367558
AKLGVQSPLPP	11	Unmodified	_AKLGVQSPLPP_					0	0	0		nc|ENSG00000164053|Q8WXE1-3|ATRIP;ENSG00000164053|ENST00000320211|ATRIP;nc|ENSG00000164053|Q8WXE1-5|ATRIP	nc|ENSG00000164053|Q8WXE1-3|ATRIP	nc|ENSG00000164053|Q8WXE1-3|ATRIP	MULTI-MSMS	OvCa9_classI_Rep2	2	553.82958984375	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.71789	1	14240	14240		23.523	1.5628	1	245610			1070	6397	798	799	1525	1525					0.10094577919812764
AKLIPPKQSSV	11	Unmodified	_AKLIPPKQSSV_					0	0	0			REV__ANKRD36|p.T1028I|1|0.2|ENSG00000135976|chr2:97205961-97205961|C/T|missense_variant	REV__ANKRD36|p.T1028I|1|0.2|ENSG00000135976|chr2:97205961-97205961|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3572387695312	2	584.358431	1166.70231	-0.5033	-0.0002941	-2.654	-0.0015509	-3.1573	-0.001845	584.3567763295431	142.42	4.015	140.98	138.81	142.83	-1.4427					242	77	4	0	0	0	0.72473	1	14083	14083		19.104	0.77911	1	214670	+		1071	15635	799	800	1526	1526					0.12562535982578993
AKLPVFHS	8	Unmodified	_AKLPVFHS_					0	0	0		ENST00000523988.5_1_13:45969985-45970081:-|nuORF	ENST00000523988.5_1_13:45969985-45970081:-|nuORF	ENST00000523988.5_1_13:45969985-45970081:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	449.7641296386719	2	449.760895	897.507237	5.9884	0.0026934	2.0789	0.00093502	8.0674	0.0036284	449.7616579337906	25.669	0.8354	22.96	22.778	23.613	-2.7097					39	19	3	0	0	0	0.75915	1	307	307		20.482	1.1219	1	137640			1072	13161	800	801	1527	1527					0.054384099682806664
AKLQVTNVMF	10	Unmodified	_AKLQVTNVMF_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	OvCa9_classI_Rep2	2	575.818115234375	2	575.818084	1149.62162	-0.060542	-3.4861E-05	-0.35862	-0.0002065	-0.41916	-0.00024136	575.8178355273783	92.029	1.9727	90.793	90.326	92.298	-1.2355					102	37	4	0	0	0	0.55109	1	8196	8196		47.96	5.0953	1	777100	+		1073	21918	801	802	1528	1528					0.05278931668067344
AKLRKRHKQIK	11	Unmodified	_AKLRKRHKQIK_					0	0	0			REV__ENSG00000081923|ENST00000648908|ATP8B1	REV__ENSG00000081923|ENST00000648908|ATP8B1	MULTI-SECPEP	OvCa9_classI_Rep2	2	470.26641845703125	3	469.3124	1404.91537	0.34757	0.00016312	0.92437	0.00043382	1.2719	0.00059694	469.31273803632445	43.775	0.54541	41.065	40.857	41.402	-2.7097					16	10	2	0	0	0	0.026497	1	2424	2424		6.001	0	1	13314	+		1074	17079	802	803	1529	1529					0.22910886552972443
AKLRLELD	8	Unmodified	_AKLRLELD_					0	0	0		ENSG00000233917|ENST00000439682|POTEB;ENSG00000230031|ENST00000454856|POTEB2	ENSG00000233917|ENST00000439682|POTEB	ENSG00000233917|ENST00000439682|POTEB	MULTI-MSMS	OvCa99_classI_Rep5	1	479.2890930175781	2	479.290017	956.565481	0.62292	0.00029856	-0.79936	-0.00038312	-0.17644	-8.4566E-05	479.2893282505408	67.23	0.93953	67.23	66.977	67.916	0					44	23	4	0	0	0	0.73766	1	6314	6314		32.812	0	1	6917500			1075	9285	803	804	1530	1530					0.0854604682289164
AKLRQRIVPDS	11	Unmodified	_AKLRQRIVPDS_					0	0	0			REV__nc|ENSG00000117174|Q9NWK9-2|ZNHIT6	REV__nc|ENSG00000117174|Q9NWK9-2|ZNHIT6	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8825073242188	2	641.883136	1281.75172	-4.0037	-0.0025699	2.6785	0.0017193	-1.3252	-0.00085062	642.3862707583961	149.94	3.9275	149.71	147.52	151.45	-0.22696					225	78	5	0	0	0	0.72479	1	15165	15165		18.262	2.6203	1	222110	+		1076	18342	804	805	1531	1531					0.12211243991418996
AKLVNKKSTE	10	Unmodified	_AKLVNKKSTE_					0	0	0			REV__nc|ENSG00000182287|P56377|AP1S2	REV__nc|ENSG00000182287|P56377|AP1S2	MULTI-SECPEP	OvCa9_classI_Rep3	3	559.7969360351562	2	559.332413	1116.65027	-0.2872	-0.00016064	3.4711	0.0019415	3.1839	0.0017809	559.3343919115705	80.199	1.5278	77.859	77.412	78.939	-2.3399					81	29	4	0	0	0	0.026494	1	4365	4365		67.494	11.06	1	299230	+		1077	22278	805	806	1532	1532					0.09661372568848492
AKMEEWKNDV	10	Unmodified	_AKMEEWKNDV_					0	0	0		tr|A0A553SP32|A0A553SP32_NIACIChromosomepartitionproteinSmcOS=NialliacirculansOX=1397GN=smcPE=3SV=1	tr|A0A553SP32|A0A553SP32_NIACIChromosomepartitionproteinSmcOS=NialliacirculansOX=1397GN=smcPE=3SV=1	tr|A0A553SP32|A0A553SP32_NIACIChromosomepartitionproteinSmcOS=NialliacirculansOX=1397GN=smcPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	625.294921875	2	625.297713	1248.58087	-4.0361	-0.0025238	-2.3909	-0.001495	-6.427	-0.0040188	625.2960532649604	153.83	0.85246	152.38	152.14	153	-1.4516					53	25	3	0	0	0	0.53396	1	15222	15222		30.318	13.6	1	62136			1078	33998	806	807	1533	1533					-0.03347454442223352
AKMPLKLLTNH	11	Unmodified	_AKMPLKLLTNH_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2	nc|ENSG00000196218|P21817-3|RYR1;ENSG00000198626|ENST00000366574|RYR2	ENSG00000198626|ENST00000366574|RYR2	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3687744140625	2	633.373558	1264.73256	-4.5141	-0.0028591	-2.3979	-0.0015187	-6.912	-0.0043779	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.70865	1	15729	15729		26.693	2.1737	1	369460			1079	8578;8837	807	808	1534	1534					0.11078571376151558
AKMPLKLLTNH	11	Unmodified	_AKMPLKLLTNH_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2	nc|ENSG00000196218|P21817-3|RYR1;ENSG00000198626|ENST00000366574|RYR2	ENSG00000198626|ENST00000366574|RYR2	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3690185546875	2	633.373558	1264.73256	-4.1446	-0.0026251	-2.8428	-0.0018006	-6.9874	-0.0044257	633.3716506579397	149.94	3.0119	148.99	147.85	150.86	-0.9512					218	59	5	0	0	0	0.72064	1	12721	12721		22.58	3.2197	1	281260			1080	8578;8837	807	808	1535	1535					0.11078571376151558
AKMPLKLLTNH	11	Unmodified	_AKMPLKLLTNH_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2	nc|ENSG00000196218|P21817-3|RYR1;ENSG00000198626|ENST00000366574|RYR2	ENSG00000198626|ENST00000366574|RYR2	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3692016601562	2	633.373558	1264.73256	-4.8823	-0.0030923	-1.8485	-0.0011708	-6.7309	-0.0042631	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.69808	1	13078	13078		30.318	3.2704	1	765700			1081	8578;8837	807	808	1536	1536					0.11078571376151558
AKMQAGKLIS	10	Unmodified	_AKMQAGKLIS_					0	0	0			REV__nc|ENSG00000204843|Q14203-5|DCTN1	REV__nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.784912109375	2	523.804977	1045.5954	-0.70466	-0.00036911	-2.8027	-0.0014681	-3.5073	-0.0018372	523.8031604581228	105.01	0.90405	102.94	102.68	103.59	-2.0759					27	17	2	0	0	0	0.026659	1	9594	9594		45.972	7.1661	1	104500	+		1082	23188	808	809	1537	1537					0.07442662496578123
AKMQAGKLIS	10	Unmodified	_AKMQAGKLIS_					0	0	0			REV__nc|ENSG00000204843|Q14203-5|DCTN1	REV__nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	523.804977	1045.5954	-0.65379	-0.00034246	-3.1491	-0.0016495	-3.8029	-0.001992	523.803031729107	103.32	1.1349	102.63	102.33	103.46	-0.68459	-0.1942	0.00014038	NaN	37.812	32	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113020	+		1083	23188	808	809							0.07442662496578123
AKMQAGKLIS	10	Unmodified	_AKMQAGKLIS_					0	0	0			REV__nc|ENSG00000204843|Q14203-5|DCTN1	REV__nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	523.804977	1045.5954	0.081834	4.2865E-05	-4.4301	-0.0023205	-4.3483	-0.0022776	523.8022882672562	104.34	1.6123	102.91	102.5	104.11	-1.4347	0.08313	-0.0012016	NaN	37.812	38	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149330	+		1084	23188	808	809							0.07442662496578123
AKMRNPSGG	9	Unmodified	_AKMRNPSGG_					0	0	0			REV__ENSG00000007001|ENST00000005756|UPP2	REV__ENSG00000007001|ENST00000005756|UPP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.2405700683594	2	459.234719	916.454884	-0.89989	-0.00041326	2.5896	0.0011892	1.6897	0.00077598	459.2354627237573	53.019	0.54954	49.811	49.651	50.2	-3.208					15	10	2	0	0	0	0.027462	1	3212	3212		24.519	13.008	1	28084	+		1085	16427	809	810	1538	1538					-0.0066849643696969
AKMYGKYRLTG	11	Unmodified	_AKMYGKYRLTG_					0	0	0			REV__ENSG00000008311|ENST00000417368|AASS	REV__ENSG00000008311|ENST00000417368|AASS	MULTI-MSMS	OvCa9_classI_Rep4_	4	645.3499755859375	2	644.34754	1286.68053	-6.0641	-0.0039074	-3.2514	-0.0020951	-9.3155	-0.0060024	644.3484655345192	163.66	0.90149	162.03	161.7	162.61	-1.6336					118	24	6	0	0	0	0.67529	1	16152	16152		37.812	0	1	536340	+		1086	16452	810	811	1539	1539					0.04865407962370227
AKMYGKYRLTG	11	Unmodified	_AKMYGKYRLTG_					0	0	0			REV__ENSG00000008311|ENST00000417368|AASS	REV__ENSG00000008311|ENST00000417368|AASS	MULTI-MATCH	OvCa99_classI_Rep5	1		2	644.34754	1286.68053	0.69481	0.0004477	2.8693	0.0018488	3.5641	0.0022965	644.3493106576522	161.49	1.2689	161.49	161.11	162.38	0	-0.26041	0.000829	NaN	37.812	103	24	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2943000	+		1087	16452	810	811							0.04865407962370227
AKMYGKYRLTG	11	Unmodified	_AKMYGKYRLTG_					0	0	0			REV__ENSG00000008311|ENST00000417368|AASS	REV__ENSG00000008311|ENST00000417368|AASS	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	644.34754	1286.68053	-6.99	-0.004504	-2.3718	-0.0015282	-9.3618	-0.0060322	644.3491302663502	163.11	1.1219	161.72	161.39	162.51	-1.3925	-0.026083	-0.0059251	NaN	37.812	79	25	7	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166460	+		1088	16452	810	811							0.04865407962370227
AKNRRQKA	8	Unmodified	_AKNRRQKA_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-12|SYNE2;nc|ENSG00000054654|Q8WXH0-5|SYNE2;nc|ENSG00000054654|Q8WXH0-6|SYNE2;nc|ENSG00000054654|Q8WXH0-11|SYNE2;nc|ENSG00000054654|Q8WXH0-10|SYNE2;nc|ENSG00000054654|Q8WXH0-4|SYNE2;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-3|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.7793884277344	2	486.296499	970.578445	-1.3451	-0.00065413	2.2046	0.0010721	0.85945	0.00041795	486.29840214712897	91.205	0.5044	89.181	89.029	89.534	-2.0241					14	9	3	0	0	0	0.028476	1	5689	5689		50.025	14.824	1	81783			1089	1212	811	812	1540	1540					0.09197922725650187
AKNVFTELDY	10	Unmodified	_AKNVFTELDY_					0	0	0			REV__nc|ENSG00000142945|Q99661-2|KIF2C	REV__nc|ENSG00000142945|Q99661-2|KIF2C	MULTI-MSMS	OvCa9_classI_Rep2	2	600.2978515625	2	600.300778	1198.587	0.42593	0.00025569	-3.4738	-0.0020853	-3.0479	-0.0018297	600.2986444844016	66.04	1.7869	63.345	62.872	64.659	-2.6958					108	35	5	0	0	0	0.65826	1	5123	5123		30.318	0	1	817990	+		1090	19809	812	813	1541	1541					-0.004346129390569331
AKNVPLHVLV	10	Unmodified	_AKNVPLHVLV_					0	0	0		nc|ENSG00000186153|Q9NZC7-2|WWOX;ENST00000569332.5_1_16:78133625-79245690:+|nuORF;ENSG00000186153|ENST00000566780|WWOX	nc|ENSG00000186153|Q9NZC7-2|WWOX	nc|ENSG00000186153|Q9NZC7-2|WWOX	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.81494140625	2	545.342584	1088.67061	-0.7258	-0.00039581	0.73284	0.00039965	0.0070365	3.8373E-06	545.3429625845679	94.745	0.45071	92.277	92.01	92.46	-2.4685					12	8	2	0	0	0	0.026802	1	8322	8322		34.173	7.3764	1	12632			1091	8317	813	814	1542	1542					0.12982588019303876
AKNVPLHVLV	10	Unmodified	_AKNVPLHVLV_					0	0	0		nc|ENSG00000186153|Q9NZC7-2|WWOX;ENST00000569332.5_1_16:78133625-79245690:+|nuORF;ENSG00000186153|ENST00000566780|WWOX	nc|ENSG00000186153|Q9NZC7-2|WWOX	nc|ENSG00000186153|Q9NZC7-2|WWOX	MULTI-MATCH	OvCa9_classI_Rep3	3		2	545.342584	1088.67061	-1.0531	-0.00057428	1.6513	0.00090055	0.59829	0.00032627	545.3433548684334	94.033	0.6618	92.084	91.896	92.558	-1.9492	-0.09644	0.00034863	NaN	34.173	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17915			1092	8317	813	814							0.12982588019303876
AKPIYDDDP	9	Unmodified	_AKPIYDDDP_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;DNMT1|p.Q503Rfs*25|1|0.04|ENSG00000130816|chr19:10154994-10154994|G/-|frameshift_variant;DNMT1|p.D701Tfs*87|1|0.11|ENSG00000130816|chr19:10151514-10151515|-/CTTGACTTGCATGGTCCTCTGTTACTTAAAGT|frameshift_variant	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.2809448242188	2	517.245472	1032.47639	-0.37802	-0.00019553	-4.0431	-0.0020913	-4.4211	-0.0022868	517.2435006667353	69.192	0.49443	69.192	69.019	69.513	0					24	11	3	0	0	0	0.027462	1	6572	6572		19.997	4.355	1	841690			1093	4019	814	815	1543	1543					-0.03854832927299867
AKPKVVKPK	9	Unmodified	_AKPKVVKPK_					0	0	0		ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	OvCa9_classI_Rep2	2	497.8415832519531	2	497.84222	993.669886	2.0293	0.0010103	-2.1219	-0.0010564	-0.092576	-4.6088E-05	497.84089173249737	27.926	0.56301	25.217	25.075	25.638	-2.7097					21	11	3	0	0	0	0.67509	1	527	527		23.042	0	1	46225			1094	8438	815	816	1544	1544					0.17279793370266816
AKPLKYPAN	9	Unmodified	_AKPLKYPAN_					0	0	0		ENST00000368653.7_1_10:129901969-129902014:-|nuORF	ENST00000368653.7_1_10:129901969-129902014:-|nuORF	ENST00000368653.7_1_10:129901969-129902014:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	501.2901306152344	2	501.292559	1000.57057	-0.80197	-0.00040202	-3.5119	-0.0017605	-4.3139	-0.0021625	501.2906816095173	135.63	4.8104	135.4	133.71	138.52	-0.22697					221	98	3	0	0	0	0.67509	1	13471	13471		23.042	0	1	70595			1095	10878	816	817	1545	1545					0.07030350685499798
AKPTLEEIVG	10	Unmodified	_AKPTLEEIVG_					0	0	0		tr|A0A553SQK4|A0A553SQK4_NIACIThioesterdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07855PE=4SV=1	tr|A0A553SQK4|A0A553SQK4_NIACIThioesterdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07855PE=4SV=1	tr|A0A553SQK4|A0A553SQK4_NIACIThioesterdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07855PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.3211059570312	2	528.800414	1055.58628	-0.0032197	-1.7026E-06	-2.7589	-0.0014589	-2.7621	-0.0014606	528.7987506023868	37.509	1.5397	34.616	34.392	35.932	-2.8925					53	30	3	0	0	0	0.026752	1	1479	1479		53.351	17.733	1	302020			1096	34171	817	818	1546	1546					0.06070592411901998
AKQCLKLSR	9	Unmodified	_AKQCLKLSR_					0	0	0			REV__ENST00000313732.8_1_16:85008678-85008795:-|nuORF	REV__ENST00000313732.8_1_16:85008678-85008795:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	523.8134155273438	2	523.810593	1045.60663	2.8115	0.0014727	3.5817	0.0018762	6.3932	0.0033488	523.812092065733	27.011	0.63779	24.301	24.022	24.66	-2.7097					38	19	3	0	0	0	0.69123	1	437	437		20.947	7.4929	1	44042	+		1097	24372	818	819	1547	1547					0.08565484590712913
AKQDSFRSRL	10	Unmodified	_AKQDSFRSRL_					0	0	0		ENSG00000180921|ENST00000388913|FAM83H	ENSG00000180921|ENST00000388913|FAM83H	ENSG00000180921|ENST00000388913|FAM83H	MSMS	OvCa9_classI_Rep4_	4	604.3306884765625	2	604.330736	1206.64692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.56	1	141.12	140.62	141.62	-1.4427								0	0	0	0.13877	1	13947	13947		25.126	5.1292	1				1098	7901	819	820	1548	1548					0.05186122514851377
AKQDVVLNYPM	11	Unmodified	_AKQDVVLNYPM_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000586276.5_1_17:42928644-42931004:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MULTI-MSMS	OvCa99_classI_Rep5	1	639.3334350585938	2	639.331556	1276.64856	1.5936	0.0010188	0.32015	0.00020468	1.9137	0.0012235	639.3316958384813	93.532	0.74257	93.532	93.221	93.964	0					35	17	4	0	0	0	0.1379	1	10142	10142		89.029	34.306	1	4798100			1099	2685	820	821	1549	1549					0.021299954885762418
AKQGILPL	8	Unmodified	_AKQGILPL_					0	0	0			REV__ENST00000469698.5_1_17:39991516-39991918:-|nuORF	REV__ENST00000469698.5_1_17:39991516-39991918:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	420.27081298828125	2	420.271096	838.527639	-1.0841	-0.00045562	1.3621	0.00057247	0.27804	0.00011685	420.27150279297234	121.04	1.2252	119.7	119.39	120.62	-1.3479					46	23	3	0	0	0	0.64377	1	11399	11399		54.765	10.234	1	105860	+		1100	26248	821	822	1550	1550					0.1019158062807719
AKQKLQQTL	9	Unmodified	_AKQKLQQTL_					0	0	0		nc|ENSG00000177380|O75145-2|PPFIA3;ENSG00000177380|ENST00000334186|PPFIA3;TRPM4-PPFIA3|1|fusion;ENST00000602716.5_1_19:49631560-49640169:+|nuORF;ENST00000421230.6_1_19:49631605-49643027:+|nuORF	nc|ENSG00000177380|O75145-2|PPFIA3	nc|ENSG00000177380|O75145-2|PPFIA3	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.3219604492188	2	529.321848	1056.62914	1.5855	0.00083925	1.4634	0.00077459	3.0489	0.0016138	529.3226028011923	136.4	1.1682	134.86	134.6	135.76	-1.5437					62	23	4	0	0	0	0.60342	1	13247	13247		31.53	2.3803	1	101290			1101	7674	822	823	1551	1551					0.10309407260001535
AKQVKELPKAT	11	Unmodified	_AKQVKELPKAT_					0	0	0		tr|A0A553SI95|A0A553SI95_NIACIC5apeptidaseOS=NialliacirculansOX=1397GN=CEQ21_14480PE=3SV=1	tr|A0A553SI95|A0A553SI95_NIACIC5apeptidaseOS=NialliacirculansOX=1397GN=CEQ21_14480PE=3SV=1	tr|A0A553SI95|A0A553SI95_NIACIC5apeptidaseOS=NialliacirculansOX=1397GN=CEQ21_14480PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	404.9142761230469	3	404.915201	1211.72377	0.72125	0.00029205	-3.0597	-0.0012389	-2.3384	-0.00094687	404.9139850664658	29.012	1.2465	29.012	28.39	29.636	0					46	24	4	0	0	0	0.60035	1	994	994		44.639	7.1313	1	1616400			1102	33357	823	824	1552	1552					0.12637921011310027
AKRAIPLLI	9	Unmodified	_AKRAIPLLI_					0	0	0		tr|A0A7D6VZ87|A0A7D6VZ87_9CLOTDUF4367domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18655PE=4SV=1	tr|A0A7D6VZ87|A0A7D6VZ87_9CLOTDUF4367domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18655PE=4SV=1	tr|A0A7D6VZ87|A0A7D6VZ87_9CLOTDUF4367domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18655PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	497.8421630859375	2	497.84222	993.669886	2.0293	0.0010103	-2.1219	-0.0010564	-0.092576	-4.6088E-05	497.84089173249737	27.926	0.56301	25.217	25.075	25.638	-2.7097					21	11	3	0	0	0	0.6653	1	539	539		24.203	6.8378	1	46225			1103	35353	824	825	1553	1553					0.17279793370266816
AKRITNPVQ	9	Unmodified	_AKRITNPVQ_					0	0	0			REV__KIF26B-SMYD3|3|fusion	REV__KIF26B-SMYD3|3|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.811279296875	2	513.806365	1025.59818	-1.1666	-0.00059942	0.63837	0.000328	-0.52825	-0.00027142	513.8061827133372	44.146	0.61367	44.146	43.737	44.35	0					25	13	4	0	0	0	0.027462	1	2989	2989		29.15	0	1	1462200	+		1104	28337	825	826	1554	1554					0.08640253945759468
AKRSLCVCT	9	Unmodified	_AKRSLCVCT_					0	0	0			REV__JAG1|p.K771Lfs*51|1|0.04|ENSG00000101384|chr20:10644897-10644898|-/AAAGA|frameshift_variant	REV__JAG1|p.K771Lfs*51|1|0.04|ENSG00000101384|chr20:10644897-10644898|-/AAAGA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.7566223144531	2	490.75443	979.494306	-0.59763	-0.00029329	3.8362	0.0018826	3.2385	0.0015893	490.75609348856585	71.239	1.4114	67.783	67.44	68.851	-3.4563					83	28	5	0	0	0	0.42676	1	5441	5441		49.442	1.5259	1	887970	+		1105	28322	826	827	1555	1555					0.0037388752223250776
AKRVVRDPQ	9	Unmodified	_AKRVVRDPQ_					0	0	0		ENSG00000090382|ENST00000261267|LYZ	ENSG00000090382|ENST00000261267|LYZ	ENSG00000090382|ENST00000261267|LYZ	MULTI-MSMS	OvCa9_classI_Rep3	3	534.8182983398438	2	534.817264	1067.61998	-1.6544	-0.00088479	3.9898	0.0021338	2.3354	0.001249	534.8193184562042	141.92	1.091	140.91	140.68	141.78	-1.0106					38	21	3	0	0	0	0.63422	1	11757	11757		27.882	0.83493	1	67661			1106	1837	827	828	1556	1556					0.08887058694313055
AKSAGPLLHLK	11	Unmodified	_AKSAGPLLHLK_					0	0	0			REV__ENSG00000272636|ENST00000613549|DOC2B	REV__ENSG00000272636|ENST00000613549|DOC2B	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.3275756835938	2	567.853316	1133.69208	0.59832	0.00033976	-1.083	-0.000615	-0.48471	-0.00027524	567.8524958703994	68.504	3.1488	65.69	64.159	67.308	-2.8144					96	62	2	0	0	0	0.025814	1	2936	2936		33.922	6.0394	1	23114	+		1107	23615	828	829	1557	1557					0.1305797304803491
AKSGYFLSI	9	Unmodified	_AKSGYFLSI_					0	0	0		nc|ENSG00000112414|Q86SQ4-2|ADGRG6;nc|ENSG00000112414|Q86SQ4|ADGRG6;nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENSG00000112414|ENST00000367609|ADGRG6;ENST00000415128.6_1_6:142623466-142692070:+|nuORF	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	MULTI-MSMS	OvCa9_classI_Rep2	2	493.2701110839844	2	493.271293	984.528032	-0.30487	-0.00015039	0.024889	1.2277E-05	-0.27998	-0.00013811	493.27122680461815	99.652	1.1406	98.821	98.517	99.658	-0.83051					50	22	3	0	0	0	0.46356	1	9103	9103		45.972	0	1	210980			1108	2904	829	830	1558	1558					0.03514955557295707
AKSQSVRKLV	10	Unmodified	_AKSQSVRKLV_					0	0	0		ENST00000462269.1_1_17:40467765-40469390:-|nuORF	ENST00000462269.1_1_17:40467765-40469390:-|nuORF	ENST00000462269.1_1_17:40467765-40469390:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	558.350830078125	2	558.348397	1114.68224	-1.3961	-0.00077949	4.0639	0.0022691	2.6679	0.0014896	558.3506628523401	83.366	2.2805	81.079	80.639	82.919	-2.2867					139	47	4	0	0	0	0.52439	1	4747	4747		51.193	5.2204	1	1662600			1109	12197	830	831	1559	1559					0.12948785042658528
AKSSAKTPLCE	11	Unmodified	_AKSSAKTPLCE_					0	0	0			REV__KDM3A-LTBP1|1|fusion	REV__KDM3A-LTBP1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	567.7942504882812	2	567.794806	1133.57506	-0.74365	-0.00042224	-2.3996	-0.0013625	-3.1432	-0.0017847	567.7933805931018	90.163	1.4315	88.082	87.541	88.973	-2.0805					79	27	4	0	0	0	0.34051	1	5588	5588		65.465	0.30814	1	748140	+		1110	28330	831	832	1560	1560					0.013614470461106976
AKTATKVAKVL	11	Unmodified	_AKTATKVAKVL_					0	0	0			REV__ENSG00000162949|ENST00000295055|CAPN13	REV__ENSG00000162949|ENST00000295055|CAPN13	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.3097534179688	2	565.368798	1128.72304	2.6628	0.0015055	3.5228	0.0019917	6.1856	0.0034972	565.3705859609671	96.603	0.20899	96.603	96.459	96.668	0					7	4	2	0	0	0	0.026007	1	10594	10594		24.519	4.5224	1	263440	+		1111	20795	832	833	1561	1561					0.16383126362279654
AKTKEKLL	8	Unmodified	_AKTKEKLL_					0	0	0			REV__tr|A0A553SLD9|A0A553SLD9_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_20440PE=4SV=1	REV__tr|A0A553SLD9|A0A553SLD9_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_20440PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.781494140625	2	465.80276	929.590967	-0.67865	-0.00031612	-2.7093	-0.001262	-3.388	-0.0015781	465.80187619346486	44.373	0.22397	44.373	44.26	44.484	0					7	4	2	0	0	0	0.028476	1	2987	2987		31.955	0	1	49429	+		1112	30214	833	834	1562	1562					0.12335521345323741
AKTRLADLKV	10	Unmodified	_AKTRLADLKV_					0	0	0		ENSG00000187741|ENST00000389301|FANCA;nc|ENSG00000187741|O15360-3|FANCA;FANCA|p.E886Rfs*3|1|0.09|ENSG00000187741|chr16:89765012-89765012|C/-|frameshift_variant	ENSG00000187741|ENST00000389301|FANCA	ENSG00000187741|ENST00000389301|FANCA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.8226318359375	2	557.850773	1113.68699	0.2611	0.00014565	-2.7881	-0.0015553	-2.527	-0.0014097	558.349450034447	99.198	0.77901	96.873	96.484	97.263	-2.3253					23	14	2	0	0	0	0.027117	1	8873	8873		28.081	5.039	1	28100			1113	8427	834	835	1563	1563					0.1346966918540602
AKTSKILPI	9	Unmodified	_AKTSKILPI_					0	0	0			REV__tr|A0A7D6VZ04|A0A7D6VZ04_9CLOTFlotillin-likeproteinFloAOS=ClostridiumintestinaleOX=36845GN=floAPE=3SV=1	REV__tr|A0A7D6VZ04|A0A7D6VZ04_9CLOTFlotillin-likeproteinFloAOS=ClostridiumintestinaleOX=36845GN=floAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.7787780761719	2	485.81841	969.622267	-0.71798	-0.00034881	0.01869	9.0801E-06	-0.69928	-0.00033973	485.81821551803813	73.664	0.9991	70.268	70.076	71.075	-3.3961					41	20	4	0	0	0	0.027462	1	5807	5807		29.15	0	1	95546	+		1114	31830	835	836	1564	1564					0.13624094379429152
AKVARLSQV	9	Unmodified	_AKVARLSQV_					0	0	0		ENST00000519876.1_1_8:144351566-144355345:+|nuORF	ENST00000519876.1_1_8:144351566-144355345:+|nuORF	ENST00000519876.1_1_8:144351566-144355345:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	486.3046875	2	486.303458	970.592364	0.86253	0.00041945	2.6071	0.0012679	3.4697	0.0016873	486.3047324036629	126.22	3.5173	125.15	124.71	128.23	-1.0715					158	68	5	0	0	0	0.44568	1	9898	9898		47.657	3.5405	1	3175900			1115	13094	836	837	1565	1565					0.10589155434092845
AKVCVCPFYLF	11	Unmodified	_AKVCVCPFYLF_					0	0	0		Harlequin-int_dup373|chr10:84170978-84171612:-|1.3789702665036672|0.2294773950638092|2.59|421.0|14|2|sense	Harlequin-int_dup373|chr10:84170978-84171612:-|1.3789702665036672|0.2294773950638092|2.59|421.0|14|2|sense	Harlequin-int_dup373|chr10:84170978-84171612:-|1.3789702665036672|0.2294773950638092|2.59|421.0|14|2|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	645.3270874023438	2	645.324688	1288.63482	-0.5958	-0.00038449	3.229	0.0020838	2.6332	0.0016993	645.3267068965904	99.968	2.6534	97.643	97.263	99.917	-2.3253					142	52	6	0	0	0	0.68684	1	9012	9012		34.173	2.5383	1	2886900			1116	14381	837	838	1566	1566					0.002050464557896703
AKVDHIARVS	10	Unmodified	_AKVDHIARVS_					0	0	0			REV__ENSG00000014824|ENST00000264451|SLC30A9	REV__ENSG00000014824|ENST00000264451|SLC30A9	MULTI-MSMS	OvCa9_classI_Rep2	2	548.3168334960938	2	548.317097	1094.61964	-0.2708	-0.00014849	0.43643	0.0002393	0.16562	9.0814E-05	548.3170454569442	74.409	2.3514	72.438	71.221	73.572	-1.9711					105	44	4	0	0	0	0.70152	1	6090	6090		30.318	1.1682	1	413940	+		1117	16513	838	839	1567	1567					0.07611638974458401
AKVISLLHY	9	Unmodified	_AKVISLLHY_					0	0	0			REV__ENSG00000171811|ENST00000368586|CFAP46	REV__ENSG00000171811|ENST00000368586|CFAP46	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.3358764648438	2	522.316035	1042.61752	0.17339	9.0565E-05	-2.052	-0.0010718	-1.8786	-0.00098124	522.3149975241519	72.027	1.4839	69.424	68.584	70.068	-2.6023					42	29	2	0	0	0	0.027462	1	3338	3338		37.159	0.84147	1	29848	+		1118	21648	839	840	1568	1568					0.09791210236653569
AKVLLTKAE	9	Unmodified	_AKVLLTKAE_					0	0	0		tr|A0A553SF29|A0A553SF29_NIACIN-acetylmuramicacid6-phosphateetheraseOS=NialliacirculansOX=1397GN=murQPE=3SV=1	tr|A0A553SF29|A0A553SF29_NIACIN-acetylmuramicacid6-phosphateetheraseOS=NialliacirculansOX=1397GN=murQPE=3SV=1	tr|A0A553SF29|A0A553SF29_NIACIN-acetylmuramicacid6-phosphateetheraseOS=NialliacirculansOX=1397GN=murQPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.2867126464844	2	486.808042	971.601532	-0.65838	-0.0003205	0.2647	0.00012886	-0.39367	-0.00019164	486.8080341409551	48.827	1.0447	46.067	45.478	46.523	-2.7603					32	20	3	0	0	0	0.027441	1	3046	3046		58.782	18.004	1	25670			1119	32984	840	841	1569	1569					0.11459503999753906
AKVPGRVK	8	Unmodified	_AKVPGRVK_					0	0	0		ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A;MAP1A|p.K905Tfs*9|1|0.22|ENSG00000166963|chr15:43524186-43524187|-/C|frameshift_variant;MAP1A|p.A1115Lfs*16|1|0.07|ENSG00000166963|chr15:43524814-43524815|-/GCTTCTCCTCCACCATCTGGCCC|frameshift_variant;MAP1A|p.G1106Wfs*31|1|0.04|ENSG00000166963|chr15:43524788-43524789|-/T|frameshift_variant	ENSG00000166963|ENST00000300231|MAP1A	ENSG00000166963|ENST00000300231|MAP1A	MULTI-SECPEP	OvCa99_classI_Rep5	1	427.7391357421875	2	427.782162	853.549771	-0.23478	-0.00010043	-0.21266	-9.0971E-05	-0.44744	-0.00019141	427.78207513047835	40.455	0.27922	40.455	40.34	40.619	0					9	5	2	0	0	0	0.028476	1	2465	2465		12.207	0	1	32264			1120	6741	841	842	1570	1570					0.11713805096508167
AKVRMIKGE	9	Unmodified	_AKVRMIKGE_					0	0	0		nc|ENSG00000102081|Q06787-8|FMR1;nc|ENSG00000102081|Q06787-6|FMR1;nc|ENSG00000102081|Q06787-2|FMR1;nc|ENSG00000102081|Q06787-4|FMR1;nc|ENSG00000102081|Q06787-5|FMR1;nc|ENSG00000102081|Q06787-9|FMR1;nc|ENSG00000102081|Q06787-7|FMR1;nc|ENSG00000102081|Q06787-3|FMR1;ENSG00000102081|ENST00000370475|FMR1;nc|ENSG00000102081|Q06787-11|FMR1;nc|ENSG00000102081|Q06787-10|FMR1	nc|ENSG00000102081|Q06787-8|FMR1;nc|ENSG00000102081|Q06787-11|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	MULTI-MSMS	OvCa9_classI_Rep2	2	516.3013916015625	2	516.305144	1030.59573	-1.364	-0.00070426	-2.6442	-0.0013652	-4.0083	-0.0020695	516.3037096883031	61.9	2.366	59.14	58.568	60.934	-2.7593					127	45	4	0	0	0	0.46356	1	4686	4686		45.972	6.7194	1	1077700			1121	2221;14932	842	843	1571	1571					0.08166082216439463
AKVRQFDIN	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AKVRQFDIN_					1	0	0		chr10:84102833-84171722|221|17.26|0.0|20.72|-|1|TE_info:LTR49-int,LTR49-int_dup1367,ERV1,LTR,acceptor,-,84101562,84102833|None,CERNA2|16	chr10:84102833-84171722|221|17.26|0.0|20.72|-|1|TE_info:LTR49-int,LTR49-int_dup1367,ERV1,LTR,acceptor,-,84101562,84102833|None,CERNA2|16	chr10:84102833-84171722|221|17.26|0.0|20.72|-|1|TE_info:LTR49-int,LTR49-int_dup1367,ERV1,LTR,acceptor,-,84101562,84102833|None,CERNA2|16	MULTI-MSMS	OvCa9_classI_Rep2	2	566.80908203125	2	566.809105	1131.60366	-1.2191	-0.00069098	1.2365	0.00070083	0.01738	9.8509E-06	566.8096697785414	54.761	1.297	51.947	51.424	52.721	-2.8139					80	25	4	0	0	0	0.22961	1	3762	3762		71.296	14.575	1	651890			1122	281	843	844	1572	1572					0.0431193273759618
AKVTGHPKSL	10	Unmodified	_AKVTGHPKSL_					0	0	0			REV__ENSG00000117593|ENST00000649689|DARS2	REV__ENSG00000117593|ENST00000649689|DARS2	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.7756958007812	2	519.308741	1036.60293	0.10821	5.6197E-05	-0.52421	-0.00027223	-0.41599	-0.00021603	519.3083995659781	78.145	1.369	76.405	75.777	77.146	-1.7398					65	26	3	0	0	0	0.026867	1	6587	6587		35.152	0	1	224540	+		1123	18358	844	845	1573	1573					0.08609138088513646
AKWAWLRR	8	Unmodified	_AKWAWLRR_					0	0	0		ENSG00000198677|ENST00000358746|SKIC3;ENST00000513232.1_1_5:94857997-94861145:-|nuORF	ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.7638549804688	2	543.81961	1085.62467	-0.92111	-0.00050092	-3.9679	-0.0021578	-4.889	-0.0026588	543.8172415088285	37.177	0.55377	37.177	36.977	37.531	0					29	11	4	0	0	0	0.028476	1	2027	2027		38.806	3.6541	1	119510			1124	8846	845	846	1574	1574					0.08527987627735456
AKYITTPISV	10	Unmodified	_AKYITTPISV_					0	0	0			REV__nc|ENSG00000168116|Q9HCI6-2|KIAA1586;REV__ENSG00000168116|ENST00000370733|KIAA1586	REV__ENSG00000168116|ENST00000370733|KIAA1586	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.84765625	2	546.818607	1091.62266	0.34714	0.00018982	-2.4191	-0.0013228	-2.072	-0.001133	546.8169876406095	32.908	0.7468	30.212	29.953	30.7	-2.6954					25	14	2	0	0	0	0.027088	1	855	855		19.997	1.6724	1	21336	+		1125	21347;28989	846	847	1575	1575					0.08051469308588821
ALAAALAHI	9	Unmodified	_ALAAALAHI_					0	0	0		DDX21|p.V637*|1|0.26|ENSG00000165732|chr10:68978848-68978848|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21;ENSG00000107625|ENST00000373585|DDX50	DDX21|p.V637*|1|0.26|ENSG00000165732|chr10:68978848-68978848|G/-|frameshift_variant;ENSG00000107625|ENST00000373585|DDX50	DDX21|p.V637*|1|0.26|ENSG00000165732|chr10:68978848-68978848|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	425.76092529296875	2	425.760895	849.507237	0.63822	0.00027173	-0.69438	-0.00029564	-0.056158	-2.391E-05	425.7604429973413	97.926	0.80643	95.547	95.317	96.124	-2.3786					33	15	4	0	0	0	0.054534	1	8694	8694		116.12	53.143	1	106790			1126	718;2606	847	848	1576	1576					0.0764640996825392
ALAAALAHI	9	Unmodified	_ALAAALAHI_					0	0	0		DDX21|p.V637*|1|0.26|ENSG00000165732|chr10:68978848-68978848|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21;ENSG00000107625|ENST00000373585|DDX50	DDX21|p.V637*|1|0.26|ENSG00000165732|chr10:68978848-68978848|G/-|frameshift_variant;ENSG00000107625|ENST00000373585|DDX50	DDX21|p.V637*|1|0.26|ENSG00000165732|chr10:68978848-68978848|G/-|frameshift_variant	MULTI-MATCH	OvCa99_classI_Rep5	1		2	425.760895	849.507237	2.3655	0.0010071	0.41394	0.00017624	2.7794	0.0011834	425.76092885279814	95.266	0.41987	95.266	95.075	95.495	0	-0.1987	0.00031442	NaN	116.12	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	538310			1127	718;2606	847	848							0.0764640996825392
ALAAALAHI	9	Unmodified	_ALAAALAHI_					0	0	0		DDX21|p.V637*|1|0.26|ENSG00000165732|chr10:68978848-68978848|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21;ENSG00000107625|ENST00000373585|DDX50	DDX21|p.V637*|1|0.26|ENSG00000165732|chr10:68978848-68978848|G/-|frameshift_variant;ENSG00000107625|ENST00000373585|DDX50	DDX21|p.V637*|1|0.26|ENSG00000165732|chr10:68978848-68978848|G/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	425.760895	849.507237	0.13537	5.7635E-05	0.41387	0.00017621	0.54924	0.00023385	425.76082076777413	96.469	0.98487	95.448	95.169	96.154	-1.021	-0.016917	0.00031437	NaN	116.12	45	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80724			1128	718;2606	847	848							0.0764640996825392
ALAAALAHI	9	Unmodified	_ALAAALAHI_					0	0	0		DDX21|p.V637*|1|0.26|ENSG00000165732|chr10:68978848-68978848|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21;ENSG00000107625|ENST00000373585|DDX50	DDX21|p.V637*|1|0.26|ENSG00000165732|chr10:68978848-68978848|G/-|frameshift_variant;ENSG00000107625|ENST00000373585|DDX50	DDX21|p.V637*|1|0.26|ENSG00000165732|chr10:68978848-68978848|G/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	425.760895	849.507237	0.016567	7.0537E-06	0.2957	0.0001259	0.31227	0.00013295	425.7608576871266	97.358	1.1573	95.598	95.311	96.469	-1.7595	0.13332	0.00021374	NaN	116.12	41	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100080			1129	718;2606	847	848							0.0764640996825392
ALAAALRCLE	10	Acetyl (Protein N-term),Carbamidomethyl (C)	_(Acetyl (Protein N-term))ALAAALRC(Carbamidomethyl (C))LE_	ALAAALRC(1)LE		ALAAALRC(90)LE		1	1	0		ENST00000445422.5_1_22:24408011-24408092:+|nuORF	ENST00000445422.5_1_22:24408011-24408092:+|nuORF	ENST00000445422.5_1_22:24408011-24408092:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.3075561523438	2	565.305341	1128.59613	1.1361	0.00064226	3.3907	0.0019168	4.5268	0.002559	565.3072068648027	98.126	2.7067	95.747	95.368	98.074	-2.3786					164	52	5	0	0	0	0.22663	1	8850	8850		90.37	8.0648	1	4552600			1130	11980	848	849	1577	1577	134				0.03697457145631233
ALAANTLILI	10	Unmodified	_ALAANTLILI_					0	0	0		ENSG00000181023|ENST00000317121|OR56B1;OR56B1|p.N181Ifs*13|1|0.14|ENSG00000181023|chr11:5737057-5737058|-/TAAAATGTTATGTGATATTAGGATGTAAAGTAAT|frameshift_variant	ENSG00000181023|ENST00000317121|OR56B1	ENSG00000181023|ENST00000317121|OR56B1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.811279296875	2	506.823692	1011.63283	-0.67379	-0.00034149	-2.4765	-0.0012551	-3.1503	-0.0015966	506.82286055305366	101.81	0.61454	99.544	99.256	99.87	-2.2665					16	11	2	0	0	0	0.026606	1	9179	9179		52.937	3.4952	1	18916			1131	7914	849	850	1578	1578					0.12748077033870686
ALAAPRWL	8	Unmodified	_ALAAPRWL_					0	0	0		CBLN1|p.C34Afs*44|1|0.26|ENSG00000102924|chr16:49281366-49281366|A/-|frameshift_variant	REV__ENST00000298556.7_1_X:133594306-133607389:+|nuORF	REV__ENST00000298556.7_1_X:133594306-133607389:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	449.2691650390625	2	449.268887	896.523222	3.2258	0.0014492	-3.3606	-0.0015098	-0.13485	-6.0583E-05	449.26732371902864	112.43	2.5171	112.3	111.93	114.45	-0.12174					121	50	4	0	0	0	0.72134	1	10653	10653		39.021	0	1	1472600			1132	190	850	851	1579	1579					0.07082116205162947
ALAAPSANKL	10	Unmodified	_ALAAPSANKL_					0	0	0			REV__ENSG00000178773|ENST00000319518|CPNE7	REV__ENSG00000178773|ENST00000319518|CPNE7	MULTI-MSMS	OvCa9_classI_Rep2	2	478.2816467285156	2	478.282192	954.549831	0.23585	0.0001128	-0.47891	-0.00022905	-0.24306	-0.00011625	478.28189034540947	81.857	1.4017	80.209	79.767	81.169	-1.6485					51	26	3	0	0	0	0.13504	4	6976	6957;6969;6976;6982		104.75	20.708	1	1372200	+		1133	22079	851	852	1580;1581;1582;1583	1582					0.07073760305831911
ALAAPSANKL	10	Unmodified	_ALAAPSANKL_					0	0	0			REV__ENSG00000178773|ENST00000319518|CPNE7	REV__ENSG00000178773|ENST00000319518|CPNE7	MULTI-MSMS	OvCa9_classI_Rep3	3	478.2831726074219	2	478.282192	954.549831	-0.36164	-0.00017297	0.070446	3.3693E-05	-0.2912	-0.00013927	478.2821985086724	82.255	1.548	79.959	79.484	81.032	-2.2963					58	30	3	0	0	0	0.35465	2	4619	4619;4645		74.255	10.949	1	2863700	+		1134	22079	851	852	1584;1585	1584					0.07073760305831911
ALAAPSANKL	10	Unmodified	_ALAAPSANKL_					0	0	0			REV__ENSG00000178773|ENST00000319518|CPNE7	REV__ENSG00000178773|ENST00000319518|CPNE7	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.2828674316406	2	478.282192	954.549831	-0.16476	-7.8803E-05	-0.092124	-4.4061E-05	-0.25689	-0.00012286	478.28210472472836	82.803	1.4621	80.12	79.733	81.195	-2.6829					55	29	3	0	0	0	0.35465	1	6871	6871		74.255	10.048	1	2383300	+		1135	22079	851	852	1586	1586					0.07073760305831911
ALAAQSQGL	9	Unmodified	_ALAAQSQGL_					0	0	0			REV__ENST00000502955.5_1_6:30848778-30848859:+|nuORF	REV__ENST00000502955.5_1_6:30848778-30848859:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	429.7378845214844	2	429.737617	857.460681	-0.1352	-5.8101E-05	0.4073	0.00017503	0.27209	0.00011693	429.73765555310104	40.68	1.2309	37.97	37.7	38.931	-2.7097					50	24	3	0	0	0	0.16524	1	2089	2089		82.305	5.4584	1	378750	+		1136	26834	852	853	1587	1587					0.026249253463333844
ALADGVQKV	9	Unmodified	_ALADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OvCa99_classI_Rep5	1	450.7626037597656	2	450.761092	899.507631	-0.065032	-2.9314E-05	-1.0363	-0.00046713	-1.1013	-0.00049645	450.76085687985244	58.952	2.9301	58.952	58.696	61.626	0					170	72	6	0	0	0	0.014964	5	5023	5023;5050;5080;5112;5144		153.04	37.577	1	261300000			1137	2048	853	854	1588;1589;1590;1591;1592	1588					0.053857848974644185
ALADGVQKV	9	Unmodified	_ALADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OvCa9_classI_Rep2	2	450.760498046875	2	450.761092	899.507631	0.70177	0.00031633	-0.93609	-0.00042195	-0.23432	-0.00010562	450.7606188783615	62.263	2.8922	59.504	58.725	61.617	-2.7593					138	55	5	0	0	0	0.010652	9	4665	4645;4650;4653;4659;4665;4671;4677;4683;4690		166.68	42.084	1	2041100			1138	2048	853	854	1593;1594;1595;1596;1597;1598;1599;1600;1601	1597					0.053857848974644185
ALADGVQKV	9	Unmodified	_ALADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.7618408203125	2	450.761092	899.507631	0.2726	0.00012288	-1.0105	-0.00045548	-0.73786	-0.0003326	450.76081523610316	62.866	3.0066	59.409	58.715	61.722	-3.4577					168	61	5	0	0	0	0.014964	7	4381	4371;4381;4393;4405;4417;4429;4441		153.04	37.577	1	11915000			1139	2048	853	854	1602;1603;1604;1605;1606;1607;1608	1603					0.053857848974644185
ALAEIAKAEL	10	Unmodified	_ALAEIAKAEL_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-MSMS	OvCa99_classI_Rep5	1	514.8041381835938	2	514.802957	1027.59136	1.6278	0.000838	0.30721	0.00015815	1.935	0.00099615	514.8030468517798	93.075	0.62399	93.075	92.762	93.386	0					49	14	5	0	0	0	0.03438	1	10079	10079		134.77	12.59	1	7894800			1140	3186	854	855	1609	1609					0.0786689627452688
ALAEIAKAEL	10	Unmodified	_ALAEIAKAEL_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-MSMS	OvCa9_classI_Rep2	2	514.8026733398438	2	514.802957	1027.59136	-0.24002	-0.00012356	-0.34148	-0.0001758	-0.5815	-0.00029936	514.802681934344	94.085	1.5005	92.986	92.696	94.197	-1.0995					71	29	3	0	0	0	0.0030581	5	8423	8412;8418;8423;8430;8437		168.26	72.443	1	796410			1141	3186	854	855	1610;1611;1612;1613;1614	1612					0.0786689627452688
ALAEIAKAEL	10	Unmodified	_ALAEIAKAEL_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-MSMS	OvCa9_classI_Rep3	3	514.8035888671875	2	514.802957	1027.59136	-0.090032	-4.6349E-05	-0.58236	-0.0002998	-0.67239	-0.00034615	514.802612135932	94.904	1.8931	93.009	92.46	94.353	-1.8956					63	34	2	0	0	0	0.0030581	2	6157	6152;6157		168.26	47.558	1	1100700			1142	3186	854	855	1615;1616	1616					0.0786689627452688
ALAEIAKAEL	10	Unmodified	_ALAEIAKAEL_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.8035888671875	2	514.802957	1027.59136	-1.413	-0.00072742	0.79619	0.00040988	-0.61683	-0.00031754	514.8032890509428	95.456	1.6174	92.988	92.611	94.229	-2.4685					59	30	3	0	0	0	0.0091683	3	8392	8392;8404;8417		160.82	62.24	1	1059000			1143	3186	854	855	1617;1618;1619	1617					0.0786689627452688
ALAELLHGA	9	Unmodified	_ALAELLHGA_					0	0	0		SEZ6L2|p.S48T|1|0.65|ENSG00000174938|chr16:29897922-29897922|A/T|missense_variant;nc|ENSG00000174938|Q6UXD5-4|SEZ6L2;nc|ENSG00000174938|Q6UXD5-6|SEZ6L2;nc|ENSG00000174938|Q6UXD5-2|SEZ6L2;nc|ENSG00000174938|Q6UXD5-3|SEZ6L2;nc|ENSG00000174938|Q6UXD5|SEZ6L2;ENSG00000174938|ENST00000617533|SEZ6L2	SEZ6L2|p.S48T|1|0.65|ENSG00000174938|chr16:29897922-29897922|A/T|missense_variant	SEZ6L2|p.S48T|1|0.65|ENSG00000174938|chr16:29897922-29897922|A/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	447.7572326660156	2	447.75581	893.497067	2.6408	0.0011825	-0.37939	-0.00016987	2.2615	0.0010126	447.7555237686529	91.944	1.1377	91.944	91.625	92.762	0					55	26	3	0	0	0	0.17908	1	9912	9912		79.939	8.6435	1	1816100			1144	7501	855	856	1620	1620					0.04605802243054313
ALAELLHGA	9	Unmodified	_ALAELLHGA_					0	0	0		SEZ6L2|p.S48T|1|0.65|ENSG00000174938|chr16:29897922-29897922|A/T|missense_variant;nc|ENSG00000174938|Q6UXD5-4|SEZ6L2;nc|ENSG00000174938|Q6UXD5-6|SEZ6L2;nc|ENSG00000174938|Q6UXD5-2|SEZ6L2;nc|ENSG00000174938|Q6UXD5-3|SEZ6L2;nc|ENSG00000174938|Q6UXD5|SEZ6L2;ENSG00000174938|ENST00000617533|SEZ6L2	SEZ6L2|p.S48T|1|0.65|ENSG00000174938|chr16:29897922-29897922|A/T|missense_variant	SEZ6L2|p.S48T|1|0.65|ENSG00000174938|chr16:29897922-29897922|A/T|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	447.75581	893.497067	2.4019	0.0010755	-1.6235	-0.00072694	0.77834	0.00034851	447.75466458410284	93.332	0.30985	92.164	92.003	92.313	-1.168	0.11013	-0.0010769	NaN	79.939	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6553.3			1145	7501	855	856							0.04605802243054313
ALAFLRAKVP	10	Unmodified	_ALAFLRAKVP_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5;SPTBN5|p.W1154Cfs*31|1|0.18|ENSG00000137877|chr15:41878350-41878351|-/TA|frameshift_variant	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.267578125	2	543.345126	1084.6757	-0.72734	-0.0003952	-2.4909	-0.0013534	-3.2182	-0.0017486	543.3435299057668	59.352	0.71531	59.352	58.932	59.647	0					36	18	3	0	0	0	0.026982	1	5046	5046		23.042	0	1	1167800			1146	4634	856	857	1621	1621					0.1367489188194213
ALAFNTSQL	9	Unmodified	_ALAFNTSQL_					0	0	0			REV__ENST00000379707.7_1_9:33255219-33262163:-|nuORF	REV__ENST00000379707.7_1_9:33255219-33262163:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	482.76025390625	2	482.758549	963.502546	2.1392	0.0010327	1.1547	0.00055742	3.2938	0.0015901	482.7588804234167	57.803	3.1186	54.676	53.456	56.575	-3.1264					158	85	3	0	0	0	0.53483	1	1678	1678		39.253	0.44669	1	89902	+		1147	17838	857	858	1622	1622					0.019334810348709652
ALAKHLIKI	9	Unmodified	_ALAKHLIKI_					0	0	0		ENSG00000103966|ENST00000220325|EHD4	ENSG00000103966|ENST00000220325|EHD4	ENSG00000103966|ENST00000220325|EHD4	MULTI-MSMS	OvCa99_classI_Rep5	1	503.84381103515625	2	503.84222	1005.66989	0.21479	0.00010822	-0.50433	-0.0002541	-0.28953	-0.00014588	503.8418073320601	57.878	0.67194	57.878	57.65	58.322	0					35	15	4	0	0	0	0.31747	1	4888	4888		60.972	0	1	2012800			1148	2345	858	859	1623	1623					0.16727793370273503
ALAKLVEAI	9	Unmodified	_ALAKLVEAI_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000482859.1_1_4:113709241-113709472:-|nuORF;ENST00000463740.5_1_9:136217403-136218218:+|nuORF;ENST00000453064.1_1_7:76744718-76745129:-|nuORF;ENST00000401715.2_1_6:10118966-10119482:+|nuORF;ENST00000473054.1_1_14:68805457-68806021:-|nuORF;ENST00000492798.1_1_9:136217794-136218218:+|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	OvCa99_classI_Rep5	1	464.29852294921875	2	464.29731	926.580068	2.1182	0.0009835	0.52525	0.00024387	2.6435	0.0012274	464.2974835825656	100.27	0.50375	100.27	99.984	100.49	0					20	11	2	0	0	0	0.11471	1	11107	11107		93.195	21.9	1	820590			1149	5398	859	860	1624	1624					0.1138411897103424
ALAKWFCPE	9	Unmodified	_ALAKWFCPE_					0	0	0			REV__ENST00000397397.6_1_11:866620-867061:+|nuORF	REV__ENST00000397397.6_1_11:866620-867061:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.7630615234375	2	532.76532	1063.51609	-2.1899	-0.0011667	-1.5187	-0.00080909	-3.7085	-0.0019758	532.7643655204938	118.83	2.191	117.49	115.84	118.03	-1.3444					91	41	4	0	0	0	0.56889	1	11136	11136		35.618	1.4457	1	175550	+		1150	25353	860	861	1625	1625					-0.013129844575814786
ALALIYNEAL	10	Unmodified	_ALALIYNEAL_					0	0	0		ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	MULTI-MSMS	OvCa9_classI_Rep3	3	545.8110961914062	2	545.810782	1089.60701	-1.0624	-0.00057986	1.0509	0.00057359	-0.011484	-6.2683E-06	545.8110820459647	135.02	1.0828	133.9	133.65	134.74	-1.1226					47	21	4	0	0	0	0.34811	4	10911	10906;10911;10919;10926		75.043	18.292	1	105450			1151	8767	861	862	1626;1627;1628;1629	1627					0.0657918279155183
ALALLRATTG	10	Unmodified	_ALALLRATTG_					0	0	0			REV__ENST00000487651.5_1_7:100458687-100458885:+|nuORF	REV__ENST00000487651.5_1_7:100458687-100458885:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	493.8029479980469	2	493.803291	985.59203	-0.80916	-0.00039957	0.51207	0.00025286	-0.29709	-0.0001467	493.80344392967834	51.587	1.8784	48.774	48.403	50.281	-2.8129					57	37	2	0	0	0	0.48198	1	3389	3389		56.721	1.2168	1	403330	+		1152	26605	862	863	1630	1630					0.09865735714220136
ALANHLIKV	9	Unmodified	_ALANHLIKV_					0	0	0		ENSG00000013016|ENST00000322054|EHD3;ENST00000484846.1_1_11:64621807-64623066:-|nuORF	ENSG00000013016|ENST00000322054|EHD3	ENSG00000013016|ENST00000322054|EHD3	MULTI-MSMS	OvCa99_classI_Rep5	1	489.8092041015625	2	489.808377	977.6022	-0.33101	-0.00016213	1.6575	0.00081185	1.3265	0.00064972	489.8086452710614	69.287	0.9422	69.287	69.063	70.005	0					63	22	4	0	0	0	0.079296	2	6575	6575;6606		102.77	17.414	1	3093500			1153	979	863	864	1631;1632	1631					0.11250343439473909
ALANNVLQL	9	Unmodified	_ALANNVLQL_					0	0	0		nc|ENSG00000136754|Q8IZP0-11|ABI1;nc|ENSG00000136754|Q8IZP0-10|ABI1;nc|ENSG00000136754|Q8IZP0-8|ABI1;ABI1|p.K445Qfs*5|1|0.1|ENSG00000136754|chr10:26751616-26751617|-/G|frameshift_variant;nc|ENSG00000136754|Q8IZP0-7|ABI1;nc|ENSG00000136754|Q8IZP0-2|ABI1;nc|ENSG00000136754|Q8IZP0-4|ABI1;nc|ENSG00000136754|Q8IZP0-3|ABI1;nc|ENSG00000136754|Q8IZP0-5|ABI1;nc|ENSG00000136754|Q8IZP0-6|ABI1;ENSG00000136754|ENST00000376140|ABI1;nc|ENSG00000136754|Q8IZP0-12|ABI1;nc|ENSG00000136754|Q8IZP0|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	nc|ENSG00000136754|Q8IZP0-11|ABI1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.793212890625	2	478.282192	954.549831	-0.16476	-7.8803E-05	-0.092124	-4.4061E-05	-0.25689	-0.00012286	478.28210472472836	82.803	1.4621	80.12	79.733	81.195	-2.6829					55	29	3	0	0	0	0.027441	1	6916	6916		45.952	22.909	1	2383300			1154	8	864	865	1633	1633					0.07073760305854648
ALAPAAVPGH	10	Unmodified	_ALAPAAVPGH_					0	0	0		ENST00000215882.9_1_22:19165493-19165728:-|nuORF	ENST00000215882.9_1_22:19165493-19165728:-|nuORF	ENST00000215882.9_1_22:19165493-19165728:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	452.2571716308594	2	452.255977	902.497401	0.0022493	1.0173E-06	0.067312	3.0442E-05	0.069562	3.146E-05	452.2558686868216	60.068	0.91953	60.068	59.726	60.646	0					57	22	3	0	0	0	0.49566	1	5246	5246		54.765	10.648	1	1177400			1155	9661	865	866	1634	1634					0.042252219628949206
ALAPALWW	8	Unmodified	_ALAPALWW_					0	0	0		nc|ENSG00000204936|Q8N6Q3|CD177;ENSG00000204936|ENST00000618265|CD177	nc|ENSG00000204936|Q8N6Q3|CD177	nc|ENSG00000204936|Q8N6Q3|CD177	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.796875	2	464.257988	926.501424	1.887	0.00087606	-4.1263	-0.0019157	-2.2393	-0.0010396	464.2559554398042	82.913	0.50977	82.913	82.694	83.204	0					16	11	2	0	0	0	0.028476	1	8605	8605		33.493	8.989	1	300050			1156	9037	866	867	1635	1635					0.03523311456604006
ALAPGPLCSA	10	Unmodified	_ALAPGPLCSA_					0	0	0			REV__ENST00000527730.1_3_8:145743395-145745348:+|nuORF	REV__ENST00000527730.1_3_8:145743395-145745348:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.91546630859375	2	450.236396	898.458238	0.86439	0.00038918	2.4623	0.0011086	3.3267	0.0014978	450.2378102952899	38.636	1.0898	35.71	35.156	36.246	-2.9264					28	21	3	0	0	0	0.026915	1	1571	1571		27.882	4.8455	1	23989	+		1157	27158	867	868	1636	1636					0.004947536170220701
ALAPGVRAV	9	Unmodified	_ALAPGVRAV_					0	0	0		nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	MULTI-MSMS	OvCa9_classI_Rep4_	4	427.26666259765625	2	427.266345	852.518136	0.29438	0.00012578	-0.32714	-0.00013978	-0.032761	-1.3998E-05	427.26610430062885	68.863	1.0314	65.372	65.113	66.144	-3.4902					50	20	3	0	0	0	0.27546	1	5134	5134		65.803	10.299	1	273360			1158	3637	868	869	1637	1637					0.08597812342554789
ALAPGVRAV	9	Unmodified	_ALAPGVRAV_					0	0	0		nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	MULTI-MATCH	OvCa9_classI_Rep2	2		2	427.266345	852.518136	-1.437	-0.00061398	1.7579	0.0007511	0.32091	0.00013712	427.26690576803486	68.132	1.0356	65.471	64.941	65.977	-2.661	0.049274	0.00091701	NaN	65.803	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65986			1159	3637	868	869							0.08597812342554789
ALAPKILPLI	10	Unmodified	_ALAPKILPLI_					0	0	0			REV__tr|A0A553SFF0|A0A553SFF0_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08785PE=3SV=1	REV__tr|A0A553SFF0|A0A553SFF0_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08785PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2490234375	2	524.860078	1047.7056	-0.37176	-0.00019512	-1.8559	-0.00097407	-2.2276	-0.0011692	524.8592916410252	60.683	0.55307	60.683	60.518	61.071	0					18	12	2	0	0	0	0.027056	1	5310	5310		20.947	0	1	194530	+		1160	29570	869	870	1638	1638					0.18365830827292484
ALAPNLFP	8	Unmodified	_ALAPNLFP_					0	0	0		ENSG00000214324|ENST00000624688|PRR23E	ENSG00000214324|ENST00000624688|PRR23E	ENSG00000214324|ENST00000624688|PRR23E	MULTI-SECPEP	OvCa9_classI_Rep4_	4	421.7534484863281	2	421.742171	841.469789	0.21476	9.0572E-05	-3.3211	-0.0014007	-3.1064	-0.0013101	421.741929411953	90.06	0.30244	87.484	87.248	87.551	-2.575					7	5	2	0	0	0	0.028476	1	7738	7738		37.028	0	1	7957.5			1161	9170	870	871	1639	1639					0.04271318702660665
ALAPNLFP	8	Unmodified	_ALAPNLFP_					0	0	0		ENSG00000214324|ENST00000624688|PRR23E	ENSG00000214324|ENST00000624688|PRR23E	ENSG00000214324|ENST00000624688|PRR23E	MULTI-MATCH	OvCa9_classI_Rep3	3		2	421.742171	841.469789	0.15182	6.4029E-05	-0.1757	-7.4102E-05	-0.023883	-1.0072E-05	421.7410694478045	89.802	0.35993	87.721	87.541	87.901	-2.0805	0.11845	0.0013813	NaN	37.028	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6561.5			1162	9170	870	871							0.04271318702660665
ALAPSTMKI	9	Unmodified	_ALAPSTMKI_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000415776.1_1_Y:19868883-19869072:-|nuORF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000075624|ENST00000646664|ACTB;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OvCa99_classI_Rep5	1	466.2692565917969	2	466.267696	930.520839	1.0768	0.00050206	1.1657	0.00054352	2.2424	0.0010456	466.2681572074427	81.012	0.91113	81.012	80.702	81.613	0					52	21	3	0	0	0	0.049969	1	8317	8317		118.74	30.989	1	12328000			1163	1537;5081	871	872	1640	1640					0.05279899685217515
ALARDLLFKTL	11	Unmodified	_ALARDLLFKTL_					0	0	0			REV__ENSG00000171608|ENST00000377346|PIK3CD	REV__ENSG00000171608|ENST00000377346|PIK3CD	MULTI-MSMS	OvCa9_classI_Rep2	2	420.9277038574219	3	420.927329	1259.76016	-0.40847	-0.00017194	0.29792	0.0001254	-0.11055	-4.6533E-05	420.92744774972056	69.031	2.0508	66.41	66.118	68.168	-2.6203					127	40	5	0	0	0	0.54114	1	5489	5489		50.034	2.074	1	1205300	+		1164	21630	872	873	1641	1641					0.1406679790804901
ALARQLVS	8	Unmodified	_ALARQLVS_					0	0	0			REV__ENSG00000183128|ENST00000369783|CALHM3	REV__ENSG00000183128|ENST00000369783|CALHM3	MULTI-MSMS	OvCa9_classI_Rep2	2	429.2643127441406	2	429.263802	856.513051	0.11406	4.896E-05	0.056391	2.4207E-05	0.17045	7.3167E-05	429.26368354663396	40.99	1.0342	38.281	38.044	39.078	-2.7097					44	20	3	0	0	0	0.72922	1	2113	2113		37.028	3.5129	1	147490	+		1165	22343	873	874	1642	1642					0.0790550847995064
ALARSPPPPL	10	Unmodified	_ALARSPPPPL_					0	0	0			REV__ENST00000489243.5_1_9:6758133-6893415:+|nuORF	REV__ENST00000489243.5_1_9:6758133-6893415:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	509.8033447265625	2	509.805834	1017.59712	-1.3099	-0.00066782	-2.9211	-0.0014892	-4.231	-0.002157	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.762	1	11223	11223		23.523	0.48021	1	99460	+		1166	26635	874	875	1643	1643					0.08902039576844345
ALASEPLKV	9	Unmodified	_ALASEPLKV_					0	0	0		ENST00000521864.1_1_8:107752648-107754575:+|nuORF;nc|ENSG00000164830|Q8N573-7|OXR1;nc|ENSG00000164830|Q8N573-4|OXR1;nc|ENSG00000164830|Q8N573-6|OXR1;nc|ENSG00000164830|Q8N573-2|OXR1;nc|ENSG00000164830|Q8N573-5|OXR1;ENSG00000164830|ENST00000517566|OXR1;nc|ENSG00000164830|Q8N573|OXR1;chr8:106448048-106518943|172|10.29|0.35|4.87|+|ENST00000442977|OXR1,OXR1	ENST00000521864.1_1_8:107752648-107754575:+|nuORF	ENST00000521864.1_1_8:107752648-107754575:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	464.2815856933594	2	464.279118	926.543683	2.0339	0.00094431	0.56354	0.00026164	2.5975	0.0012059	464.2791679153797	77.521	0.55177	77.521	77.293	77.844	0					29	12	3	0	0	0	0.12515	1	7814	7814		90.37	27.064	1	2283500			1167	536	875	876	1644	1644					0.07747242074333371
ALASGGSLPI	10	Unmodified	_ALASGGSLPI_					0	0	0		nc|ENSG00000143190|P14859-5|POU2F1;nc|ENSG00000143190|P14859-3|POU2F1;nc|ENSG00000143190|P14859|POU2F1;nc|ENSG00000143190|P14859-2|POU2F1;ENSG00000143190|ENST00000367866|POU2F1	nc|ENSG00000143190|P14859-5|POU2F1	nc|ENSG00000143190|P14859-5|POU2F1	MULTI-MSMS	OvCa9_classI_Rep4_	4	443.2565612792969	2	443.255643	884.496732	-0.40543	-0.00017971	0.40536	0.00017968	-6.7301E-05	-2.9831E-08	443.2556823412682	66.561	1.1323	63.071	62.756	63.888	-3.4902					59	22	3	0	0	0	0.28791	1	4863	4863		82.305	2.854	1	928270			1168	5018	876	877	1645	1645					0.04986382523202337
ALASGLSVLL	10	Unmodified	_ALASGLSVLL_					0	0	0			REV__ENST00000531756.5_1_11:74862426-74914042:+|nuORF	REV__ENST00000531756.5_1_11:74862426-74914042:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	472.2940673828125	2	472.294768	942.574983	-0.49712	-0.00023479	-0.12231	-5.7768E-05	-0.61944	-0.00029256	472.2946891225931	94.578	2.4992	93.478	92.592	95.091	-1.0995					153	49	5	0	0	0	0.20267	1	8494	8494		94.006	3.6366	1	1372700	+		1169	19455	877	878	1646	1646					0.10139815108436778
ALASGLSVLL	10	Unmodified	_ALASGLSVLL_					0	0	0			REV__ENST00000531756.5_1_11:74862426-74914042:+|nuORF	REV__ENST00000531756.5_1_11:74862426-74914042:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.2955322265625	2	472.294768	942.574983	0.33767	0.00015948	-1.2741	-0.00060174	-0.9364	-0.00044226	472.2941319839028	95.959	1.6604	93.534	93.254	94.915	-2.4256					64	32	2	0	0	0	0.20267	1	8508	8508		94.006	0.81096	1	2059600	+		1170	19455	877	878	1647	1647					0.10139815108436778
ALASHLIEA	9	Unmodified	_ALASHLIEA_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	OvCa99_classI_Rep5	1	462.7620849609375	2	462.761092	923.507631	2.1755	0.0010068	-0.58507	-0.00027075	1.5905	0.000736	462.7608446497239	77.025	2.1929	77.025	76.718	78.911	0					137	52	6	0	0	0	0.062324	3	7726	7726;7756;7788		111.65	28.361	1	50060000			1171	1044	878	879	1648;1649;1650	1648					0.04281784897466423
ALASHLIEA	9	Unmodified	_ALASHLIEA_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	OvCa9_classI_Rep2	2	462.7613525390625	2	462.761092	923.507631	0.21532	9.9642E-05	-0.90406	-0.00041836	-0.68874	-0.00031872	462.760614102149	79.597	3.0806	77.902	76.948	80.029	-1.6951					148	60	4	0	0	0	0.048552	11	6677	6677;6683;6689;6695;6701;6706;6713;6719;6726;6732;6739		119.56	45.582	1	1506700			1172	1044	878	879	1651;1652;1653;1654;1655;1656;1657;1658;1659;1660;1661	1651					0.04281784897466423
ALASHLIEA	9	Unmodified	_ALASHLIEA_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	OvCa9_classI_Rep3	3	462.7623291015625	2	462.761092	923.507631	0.13025	6.0273E-05	-0.745	-0.00034476	-0.61476	-0.00028448	462.7607352709524	79.909	2.6877	77.569	77.257	79.945	-2.3399					136	52	5	0	0	0	0.015253	8	4334	4334;4338;4344;4351;4357;4363;4369;4382		152.63	55.161	1	3296900			1173	1044	878	879	1662;1663;1664;1665;1666;1667;1668;1669	1662					0.04281784897466423
ALASHLIEA	9	Unmodified	_ALASHLIEA_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.76190185546875	2	462.761092	923.507631	-1.2047	-0.00055749	0.42108	0.00019486	-0.78363	-0.00036263	462.76127391685685	80.497	2.3378	77.786	77.466	79.804	-2.7106					110	47	4	0	0	0	0.027416	6	6590	6566;6578;6590;6603;6616;6629		138.24	41.107	1	3036500			1174	1044	878	879	1670;1671;1672;1673;1674;1675	1672					0.04281784897466423
ALASLIRSV	9	Unmodified	_ALASLIRSV_					0	0	0		ENSG00000104324|ENST00000220763|CPQ	ENSG00000104324|ENST00000220763|CPQ	ENSG00000104324|ENST00000220763|CPQ	MULTI-MSMS	OvCa99_classI_Rep5	1	465.2937927246094	2	465.292559	928.570566	1.6607	0.00077269	0.87427	0.00040679	2.5349	0.0011795	465.2927384442419	98.429	0.71025	98.429	98.206	98.916	0					25	16	3	0	0	0	0.07097	1	10850	10850		106.68	32.428	1	644100			1175	2366	879	880	1676	1676					0.10342350685516521
ALASLIRSV	9	Unmodified	_ALASLIRSV_					0	0	0		ENSG00000104324|ENST00000220763|CPQ	ENSG00000104324|ENST00000220763|CPQ	ENSG00000104324|ENST00000220763|CPQ	MULTI-MSMS	OvCa9_classI_Rep2	2	465.2904357910156	2	465.292559	928.570566	-0.93472	-0.00043492	0.92669	0.00043118	-0.0080278	-3.7353E-06	465.29280017562496	99.918	1.0409	99.088	98.816	99.856	-0.83051					43	20	3	0	0	0	0.23241	1	9121	9121		70.816	10.522	1	169450			1176	2366	879	880	1677	1677					0.10342350685516521
ALASLIRSV	9	Unmodified	_ALASLIRSV_					0	0	0		ENSG00000104324|ENST00000220763|CPQ	ENSG00000104324|ENST00000220763|CPQ	ENSG00000104324|ENST00000220763|CPQ	MULTI-MATCH	OvCa9_classI_Rep3	3		2	465.292559	928.570566	-0.96676	-0.00044983	-0.3851	-0.00017918	-1.3519	-0.00062901	465.29279954381235	100.88	1.2653	99.274	98.706	99.972	-1.6053	0.072268	-0.00097207	NaN	70.816	56	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225720			1177	2366	879	880							0.10342350685516521
ALASLITLPE	10	Unmodified	_ALASLITLPE_					0	0	0			REV__tr|A0A553STL6|A0A553STL6_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05355PE=3SV=1	REV__tr|A0A553STL6|A0A553STL6_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05355PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.2813110351562	2	514.305332	1026.59611	-1.0582	-0.00054426	4.3244	0.0022241	3.2662	0.0016798	514.3072647153975	41.435	0.46864	38.454	38.023	38.491	-2.9804					14	8	2	0	0	0	0.026802	1	1847	1847		26.693	0	1	148950	+		1178	30982	880	881	1678	1678					0.08387780417274371
ALATLIHQV	9	Unmodified	_ALATLIHQV_					0	0	0		ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	MULTI-MSMS	OvCa99_classI_Rep5	1	483.2934265136719	2	483.292559	964.570566	2.116	0.0010227	-0.42437	-0.0002051	1.6917	0.00081757	483.29233940895415	92.811	1.3263	92.811	92.515	93.841	0					77	31	5	0	0	0	0.0076713	2	10054	10025;10054		181.81	93.163	1	22198000			1179	2837	881	882	1679;1680	1680					0.08686350685502475
ALATLIHQV	9	Unmodified	_ALATLIHQV_					0	0	0		ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	MULTI-MSMS	OvCa9_classI_Rep2	2	483.2914733886719	2	483.292559	964.570566	-0.43584	-0.00021064	0.073607	3.5574E-05	-0.36223	-0.00017506	483.2925756764174	93.927	2.1032	92.827	92.539	94.642	-1.0995					91	41	3	0	0	0	0.013607	5	8397	8393;8397;8403;8411;8419		157.33	75.024	1	1305100			1180	2837	881	882	1681;1682;1683;1684;1685	1682					0.08686350685502475
ALATLIHQV	9	Unmodified	_ALATLIHQV_					0	0	0		ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	MULTI-MSMS	OvCa9_classI_Rep3	3	483.2933654785156	2	483.292559	964.570566	-0.68128	-0.00032926	0.40265	0.0001946	-0.27863	-0.00013466	483.29263427886536	94.729	2.3501	92.834	92.307	94.657	-1.8956					118	46	5	0	0	0	0.013607	4	6150	6130;6136;6142;6150		157.33	67.111	1	1658600			1181	2837	881	882	1686;1687;1688;1689	1689					0.08686350685502475
ALATLIHQV	9	Unmodified	_ALATLIHQV_					0	0	0		ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	MULTI-MSMS	OvCa9_classI_Rep4_	4	483.2930908203125	2	483.292559	964.570566	-1.167	-0.00056399	0.81101	0.00039195	-0.35596	-0.00017204	483.2928360269561	95.354	2.8169	92.886	92.41	95.227	-2.4685					152	55	6	0	0	0	0.015391	5	8384	8374;8384;8398;8411;8424		152.47	61.979	1	1528200			1182	2837	881	882	1690;1691;1692;1693;1694	1691					0.08686350685502475
ALATVANEL	9	Unmodified	_ALATVANEL_					0	0	0			REV__ENSG00000162654|ENST00000355754|GBP4	REV__ENSG00000162654|ENST00000355754|GBP4	MULTI-MSMS	OvCa9_classI_Rep4_	4	451.25421142578125	2	451.2531	900.491647	2.0505	0.00092528	-2.0225	-0.00091266	0.027972	1.2622E-05	451.2520290251248	67.799	0.63481	64.308	63.988	64.622	-3.4902					29	12	3	0	0	0	0.12515	1	5007	5007		90.37	5.4543	1	734180	+		1183	20761	882	883	1695	1695					0.037420786605480316
ALATYNNSL	9	Unmodified	_ALATYNNSL_					0	0	0		nc|ENSG00000105991|P49639-3|HOXA1;nc|ENSG00000105991|P49639|HOXA1;ENSG00000105991|ENST00000643460|HOXA1	nc|ENSG00000105991|P49639-3|HOXA1	nc|ENSG00000105991|P49639-3|HOXA1	MULTI-MSMS	OvCa99_classI_Rep5	1	483.7499084472656	2	483.748182	965.481811	1.724	0.00083399	0.43818	0.00021197	2.1622	0.001046	483.74827948217114	93.154	0.66338	93.154	92.885	93.549	0					33	15	3	0	0	0	0.31747	1	10085	10085		60.972	2.19	1	3105500			1184	2520	883	884	1696	1696					-0.002311093448156498
ALAVFFLV	8	Unmodified	_ALAVFFLV_					0	0	0		ENST00000495916.1_1_7:97361495-97362128:+|nuORF;nc|ENSG00000006128|P20366-4|TAC1;nc|ENSG00000006128|P20366-2|TAC1;nc|ENSG00000006128|P20366-3|TAC1;ENSG00000006128|ENST00000319273|TAC1	ENST00000495916.1_1_7:97361495-97362128:+|nuORF	ENST00000495916.1_1_7:97361495-97362128:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	440.2687072753906	2	440.270564	878.526576	-4.3853	-0.0019307	0.084088	3.7022E-05	-4.3012	-0.0018937	440.2705323197611	154.51	0.65776	153.06	152.77	153.43	-1.4516					21	14	2	0	0	0	0.75058	1	15283	15283		16.705	0	1	23892			1185	873	884	885	1697	1697					0.08245366259188813
ALAVFFLV	8	Unmodified	_ALAVFFLV_					0	0	0		ENST00000495916.1_1_7:97361495-97362128:+|nuORF;nc|ENSG00000006128|P20366-4|TAC1;nc|ENSG00000006128|P20366-2|TAC1;nc|ENSG00000006128|P20366-3|TAC1;ENSG00000006128|ENST00000319273|TAC1	ENST00000495916.1_1_7:97361495-97362128:+|nuORF	ENST00000495916.1_1_7:97361495-97362128:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	440.270564	878.526576	-5.0407	-0.0022193	0.673	0.0002963	-4.3677	-0.001923	440.2708731518649	153.96	0.39175	152.95	152.78	153.17	-1.0076	-0.096474	0.00096944	NaN	16.705	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15524			1186	873	884	885							0.08245366259188813
ALAVGYQTASH	11	Unmodified	_ALAVGYQTASH_					0	0	0		ENSG00000163872|ENST00000305135|YEATS2;ENST00000472593.1_1_3:183521690-183528368:+|nuORF;ENST00000481343.1_1_3:183525829-183527073:+|nuORF	ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.270751953125	2	559.285463	1116.55637	0.021664	1.2116E-05	2.6779	0.0014977	2.6996	0.0015098	559.2868883071495	41.304	1.3875	38.324	38.023	39.41	-2.9804					57	26	3	0	0	0	0.025457	1	1959	1959		36.447	3.6343	1	219350			1187	6369	885	886	1698	1698					0.002756534665650179
ALAVGYQTASH	11	Unmodified	_ALAVGYQTASH_					0	0	0		ENSG00000163872|ENST00000305135|YEATS2;ENST00000472593.1_1_3:183521690-183528368:+|nuORF;ENST00000481343.1_1_3:183525829-183527073:+|nuORF	ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	559.285463	1116.55637	0.9352	0.00052304	2.0082	0.0011232	2.9434	0.0016462	559.2865114536548	40.991	0.8864	38.282	37.995	38.881	-2.7097	-0.021187	-0.00038888	NaN	36.447	32	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58445			1188	6369	885	886							0.002756534665650179
ALAVLNTI	8	Unmodified	_ALAVLNTI_					0	0	0		ENSG00000137819|ENST00000395407|PAQR5	ENSG00000137819|ENST00000395407|PAQR5	ENSG00000137819|ENST00000395407|PAQR5	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.244873046875	2	407.755278	813.496004	1.127	0.00045956	2.6824	0.0010937	3.8094	0.0015533	407.7557112779319	69.193	0.44751	69.193	68.9	69.347	0					16	10	2	0	0	0	0.028476	1	6593	6593		19.36	0	1	228260			1189	4624	886	887	1699	1699					0.08179587874155914
ALAVVAATAL	10	Unmodified	_ALAVVAATAL_					0	0	0		ENSG00000130487|ENST00000648057|KLHDC7B	ENSG00000130487|ENST00000648057|KLHDC7B	ENSG00000130487|ENST00000648057|KLHDC7B	MULTI-SECPEP	OvCa9_classI_Rep2	2	450.268310546875	2	450.28166	898.548768	1.3683	0.00061614	-0.66818	-0.00030087	0.70017	0.00031527	450.28063061683207	61.097	0.4194	58.327	58.19	58.61	-2.7696					13	7	3	0	0	0	0.027695	1	4515	4515		76.847	11.043	1	58848			1190	3989	887	888	1700	1700					0.09543545936935516
ALAWASSSSTH	11	Unmodified	_ALAWASSSSTH_					0	0	0			REV__ENST00000373189.5_1_10:73082605-73082809:+|nuORF	REV__ENST00000373189.5_1_10:73082605-73082809:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.270751953125	2	559.26727	1116.51999	-0.067653	-3.7836E-05	2.8704	0.0016053	2.8027	0.0015675	559.2687448692571	42.473	1.552	39.493	39.064	40.616	-2.9804					79	29	4	0	0	0	0.64273	1	1959	1959		40.778	1.5253	1	458750	+		1191	25030	888	889	1701	1701					-0.0336122343014722
ALCGPPPR	8	Unmodified	_ALCGPPPR_					0	0	0		ENSG00000170604|ENST00000302165|IRF2BP1	ENSG00000170604|ENST00000302165|IRF2BP1	ENSG00000170604|ENST00000302165|IRF2BP1	MULTI-MSMS	OvCa9_classI_Rep3	3	405.7193298339844	2	405.718173	809.421793	1.9299	0.00078299	-0.41137	-0.0001669	1.5185	0.00061609	405.71788630934805	120.02	2.0709	118.99	118.68	120.75	-1.0271					79	40	4	0	0	0	0.72922	1	9124	9124		37.028	7.1869	1	570100			1192	7121	889	890	1702	1702					0.00945921510970038
ALCGPPPR	8	Unmodified	_ALCGPPPR_					0	0	0		ENSG00000170604|ENST00000302165|IRF2BP1	ENSG00000170604|ENST00000302165|IRF2BP1	ENSG00000170604|ENST00000302165|IRF2BP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	405.71807861328125	2	405.718173	809.421793	0.46862	0.00019013	0.9592	0.00038916	1.4278	0.00057929	405.71843883907457	120.34	1.7473	119	118.72	120.47	-1.3444					77	33	4	0	0	0	0.72922	2	11349	11349;11364		37.028	1.8278	1	591240			1193	7121	889	890	1703;1704	1703					0.00945921510970038
ALCLPGPGVGW	11	Unmodified	_ALCLPGPGVGW_					0	0	0		ENST00000472524.1_1_11:64122844-64124563:+|nuORF;ENST00000479965.5_1_11:64120415-64123189:+|nuORF	ENST00000472524.1_1_11:64122844-64124563:+|nuORF	ENST00000472524.1_1_11:64122844-64124563:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.3333740234375	2	535.278595	1068.54264	-0.096578	-5.1696E-05	2.7709	0.0014832	2.6743	0.0014315	535.2799608335605	51.411	0.29677	51.411	51.207	51.504	0					9	6	2	0	0	0	0.025357	1	3967	3967		17.365	0	1	138140			1194	12395	890	891	1705	1705					0.011107044337904881
ALCMTLSVL	9	Carbamidomethyl (C)	_ALC(Carbamidomethyl (C))MTLSVL_	ALC(1)MTLSVL		ALC(56)MTLSVL		0	1	0			REV__ENSG00000174669|ENST00000357440|SLC29A2	REV__ENSG00000174669|ENST00000357440|SLC29A2	MULTI-MSMS	OvCa99_classI_Rep5	1	504.2655334472656	2	504.266838	1006.51912	1.2226	0.00061653	1.1994	0.00060484	2.4221	0.0012214	504.2671580041286	146.2	0.69106	146.2	145.93	146.62	0					26	13	3	0	0	0	0.36502	1	17092	17092		55.504	9.5523	1	128110	+		1195	21845	891	892	1706	1706	246				0.016125226049439334
ALCNEVER	8	Unmodified	_ALCNEVER_					0	0	0		USP53|p.A355Qfs*19|1|0.18|ENSG00000145390|chr4:119267405-119267427|GCACAGCAGTTTCTACTGAGGAT/-|frameshift_variant;ENSG00000145390|ENST00000692078|USP53	USP53|p.A355Qfs*19|1|0.18|ENSG00000145390|chr4:119267405-119267427|GCACAGCAGTTTCTACTGAGGAT/-|frameshift_variant	USP53|p.A355Qfs*19|1|0.18|ENSG00000145390|chr4:119267405-119267427|GCACAGCAGTTTCTACTGAGGAT/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	467.7894287109375	2	467.226559	932.438566	-0.92409	-0.00043176	-3.3342	-0.0015578	-4.2583	-0.0019896	467.2249274716108	45.503	0.36541	42.464	42.23	42.595	-3.0385					8	6	2	0	0	0	0.028476	1	2339	2339		21.96	7.2958	1	7390.5			1196	5222	892	893	1707	1707					-0.030356223937360483
ALCNEVER	8	Unmodified	_ALCNEVER_					0	0	0		USP53|p.A355Qfs*19|1|0.18|ENSG00000145390|chr4:119267405-119267427|GCACAGCAGTTTCTACTGAGGAT/-|frameshift_variant;ENSG00000145390|ENST00000692078|USP53	USP53|p.A355Qfs*19|1|0.18|ENSG00000145390|chr4:119267405-119267427|GCACAGCAGTTTCTACTGAGGAT/-|frameshift_variant	USP53|p.A355Qfs*19|1|0.18|ENSG00000145390|chr4:119267405-119267427|GCACAGCAGTTTCTACTGAGGAT/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	467.226559	932.438566	-0.1968	-9.195E-05	-3.5222	-0.0016457	-3.719	-0.0017376	467.2249840367854	45.466	0.40093	42.757	42.597	42.998	-2.7097	0.14613	-2.1869E-05	NaN	21.96	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11913			1197	5222	892	893							-0.030356223937360483
ALCRRRSMVL	10	Carbamidomethyl (C)	_ALC(Carbamidomethyl (C))RRRSMVL_	ALC(1)RRRSMVL		ALC(44)RRRSMVL		0	1	0		ENSG00000105668|ENST00000222275|UPK1A;nc|ENSG00000105668|O00322-2|UPK1A	ENSG00000105668|ENST00000222275|UPK1A	ENSG00000105668|ENST00000222275|UPK1A	MULTI-MSMS	OvCa9_classI_Rep4_	4	421.23968505859375	3	421.237515	1260.69071	-1.3523	-0.00056963	4.093	0.0017241	2.7407	0.0011545	421.23922442716844	66.129	1.1714	62.639	62.369	63.541	-3.4902					79	23	4	0	0	0	0.58067	1	4792	4792		44.377	10.456	1	620780			1198	2486	893	894	1708	1708	22				0.07079692415982208
ALCRVSAQL	9	Unmodified	_ALCRVSAQL_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	OvCa9_classI_Rep2	2	481.28192138671875	2	480.768394	959.522236	-1.0356	-0.00049788	-2.616	-0.0012577	-3.6516	-0.0017556	480.7669959588461	56.376	2.1314	53.572	52.879	55.01	-2.804					100	42	3	0	0	0	0.027455	1	4113	4113		42.396	15.6	1	153470	+		1199	21477	894	895	1709	1709					0.04085533773968564
ALCSRPLNL	9	Unmodified	_ALCSRPLNL_					0	0	0			REV__ENST00000377902.5_1_9:36249201-36258352:-|nuORF	REV__ENST00000377902.5_1_9:36249201-36258352:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.301513671875	2	493.776219	985.537886	1.4639	0.00072286	0.7458	0.00036826	2.2097	0.0010911	493.7748173395553	98.187	0.2522	98.187	97.995	98.247	0					8	5	2	0	0	0	0.027396	1	10790	10790		76.774	0	1	121960	+		1200	25130	895	896	1710	1710					0.0445382029100756
ALDEVFTKV	9	Unmodified	_ALDEVFTKV_					0	0	0		ENST00000479589.5_1_1:212606272-212619345:+|nuORF;ENSG00000117691|ENST00000366988|NENF	ENST00000479589.5_1_1:212606272-212619345:+|nuORF	ENST00000479589.5_1_1:212606272-212619345:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	511.28338623046875	2	511.281857	1020.54916	-0.80673	-0.00041247	0.19874	0.00010161	-0.60799	-0.00031086	511.282075128337	99.586	1.489	98.756	98.069	99.558	-0.83051					70	29	3	0	0	0	0.37182	1	9082	9082		54.722	10.345	1	393670			1201	3274	896	897	1711	1711					0.03970920866152028
ALDGRKRCS	9	Unmodified	_ALDGRKRCS_					0	0	0		ENST00000597953.1_1_3:142719968-142720172:-|nuORF	ENST00000597953.1_1_3:142719968-142720172:-|nuORF	ENST00000597953.1_1_3:142719968-142720172:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.2643737792969	2	503.26655	1004.51855	-0.74646	-0.00037567	-1.9334	-0.000973	-2.6798	-0.0013487	503.2648381316107	39.637	1.6767	36.687	36.272	37.949	-2.9503					68	32	3	0	0	0	0.37135	1	1661	1661		54.776	3.5836	1	313720			1202	14192	897	898	1712	1712					0.016468640000994128
ALDKALTSV	9	Unmodified	_ALDKALTSV_					0	0	0		CUL2|p.R669Efs*16|1|0.13|ENSG00000108094|chr10:35011950-35011950|A/-|frameshift_variant;ENSG00000108094|ENST00000374749|CUL2;nc|ENSG00000108094|Q13617-2|CUL2	CUL2|p.R669Efs*16|1|0.13|ENSG00000108094|chr10:35011950-35011950|A/-|frameshift_variant	CUL2|p.R669Efs*16|1|0.13|ENSG00000108094|chr10:35011950-35011950|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	459.2688903808594	2	459.26875	916.522947	2.6312	0.0012084	-0.10685	-4.9072E-05	2.5243	0.0011594	459.26855787213754	75.542	0.58205	75.542	75.292	75.874	0					31	14	3	0	0	0	0.22407	2	7518	7518;7549		72.243	10.698	1	3148600			1203	699	898	899	1713;1714	1713					0.06134651694662807
ALDKALTSV	9	Unmodified	_ALDKALTSV_					0	0	0		CUL2|p.R669Efs*16|1|0.13|ENSG00000108094|chr10:35011950-35011950|A/-|frameshift_variant;ENSG00000108094|ENST00000374749|CUL2;nc|ENSG00000108094|Q13617-2|CUL2	CUL2|p.R669Efs*16|1|0.13|ENSG00000108094|chr10:35011950-35011950|A/-|frameshift_variant	CUL2|p.R669Efs*16|1|0.13|ENSG00000108094|chr10:35011950-35011950|A/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	459.26875	916.522947	-0.60397	-0.00027738	1.1951	0.00054889	0.59117	0.00027151	459.2691205823411	77.974	1.0998	75.621	75.151	76.251	-2.3527	0.039273	0.00061643	NaN	72.243	43	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	272080			1204	699	898	899							0.06134651694662807
ALDKATVLL	9	Unmodified	_ALDKATVLL_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	OvCa99_classI_Rep5	1	472.2956237792969	2	472.294768	942.574983	2.2015	0.0010397	0.20952	9.8954E-05	2.411	0.0011387	472.2947944325817	92.782	1.13	92.782	92.216	93.346	0					60	26	3	0	0	0	0.13326	1	10055	10055		88.177	0.42264	1	6437400			1205	5511	899	900	1715	1715					0.10139815108414041
ALDKATVLL	9	Unmodified	_ALDKATVLL_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	OvCa9_classI_Rep2	2	472.2933654785156	2	472.294768	942.574983	-0.49712	-0.00023479	-0.12231	-5.7768E-05	-0.61944	-0.00029256	472.2946891225931	94.578	2.4992	93.478	92.592	95.091	-1.0995					153	49	5	0	0	0	0.029147	6	8464	8460;8464;8470;8476;8482;8488		136.27	43.073	1	1372700			1206	5511	899	900	1716;1717;1718;1719;1720;1721	1717					0.10139815108414041
ALDKATVLL	9	Unmodified	_ALDKATVLL_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	OvCa9_classI_Rep3	3	472.2949523925781	2	472.294768	942.574983	-0.054715	-2.5842E-05	-0.61041	-0.00028829	-0.66512	-0.00031413	472.2944757607567	95.336	1.9099	93.441	93.111	95.021	-1.8956					127	37	5	0	0	0	0.036986	6	6215	6203;6208;6215;6221;6227;6242		129.42	30.792	1	2171700			1207	5511	899	900	1722;1723;1724;1725;1726;1727	1724					0.10139815108414041
ALDKATVLL	9	Unmodified	_ALDKATVLL_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.2960205078125	2	472.294768	942.574983	0.33767	0.00015948	-1.2741	-0.00060174	-0.9364	-0.00044226	472.2941319839028	95.959	1.6604	93.534	93.254	94.915	-2.4256					64	32	2	0	0	0	0.012051	5	8456	8446;8456;8468;8480;8496		162.25	55.837	1	2059600			1208	5511	899	900	1728;1729;1730;1731;1732	1729					0.10139815108414041
ALDLLPLLI	9	Unmodified	_ALDLLPLLI_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	OvCa9_classI_Rep3	3	490.3365783691406	2	490.823161	979.631769	-1.5804	-0.00077572	2.5371	0.0012452	0.95661	0.00046953	490.8249557004759	137.06	0.19635	135.98	135.9	136.1	-1.0858					5	3	2	0	0	0	0.027449	1	11150	11150		40.573	0	1	16104			1209	1811	900	901	1733	1733					0.1411386266494219
ALDLQVQTPLH	11	Unmodified	_ALDLQVQTPLH_					0	0	0			REV__ENST00000550515.1_1_12:56537273-56537643:+|nuORF	REV__ENST00000550515.1_1_12:56537273-56537643:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	412.2315979003906	3	412.231189	1233.67174	1.934	0.00079726	-0.68164	-0.00028099	1.2524	0.00051626	412.2308161483838	65.879	3.828	62.933	62.452	66.28	-2.9459					181	75	4	0	0	0	0.71191	1	2717	2717		17.167	0	1	1016400	+		1210	27478	901	902	1734	1734					0.06424757597551434
ALDPALRRPS	10	Unmodified	_ALDPALRRPS_					0	0	0		SETD1A|p.R461Pfs*18|1|0.21|ENSG00000099381|chr16:30965117-30965118|-/C|frameshift_variant;ENSG00000099381|ENST00000262519|SETD1A	SETD1A|p.R461Pfs*18|1|0.21|ENSG00000099381|chr16:30965117-30965118|-/C|frameshift_variant	SETD1A|p.R461Pfs*18|1|0.21|ENSG00000099381|chr16:30965117-30965118|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	548.3172607421875	2	548.317097	1094.61964	-0.84164	-0.00046149	0.28768	0.00015774	-0.55396	-0.00030375	548.3171569301378	74.411	2.3795	72	71.151	73.531	-2.4106					140	47	5	0	0	0	0.66721	1	3728	3728		34.173	2.6427	1	1829400			1211	1972	902	903	1735	1735					0.07611638974458401
ALDPFVGQP	9	Unmodified	_ALDPFVGQP_					0	0	0			REV__ENST00000460243.1_1_3:53262881-53263452:-|nuORF	REV__ENST00000460243.1_1_3:53262881-53263452:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.2800598144531	2	472.247818	942.481082	-0.17955	-8.4793E-05	-4.0432	-0.0019094	-4.2227	-0.0019942	472.24575359304816	35.822	0.32357	35.822	35.661	35.984	0					16	6	3	0	0	0	0.027462	1	1828	1828		32.812	20.606	1	170960	+		1212	26077	903	904	1736	1736					0.007540960061419355
ALDPLADKILI	11	Unmodified	_ALDPLADKILI_					0	0	0		ENST00000489345.5_1_20:5990447-6004030:+|nuORF;ENST00000609154.1_1_20:5988006-5996237:+|nuORF;nc|ENSG00000088766|Q9UJA2-2|CRLS1;ENSG00000088766|ENST00000378863|CRLS1	ENST00000489345.5_1_20:5990447-6004030:+|nuORF	ENST00000489345.5_1_20:5990447-6004030:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	591.3610229492188	2	591.360639	1180.70673	0.70071	0.00041437	-2.052	-0.0012135	-1.3513	-0.00079909	591.3589096199734	129.01	0.84128	128.78	128.53	129.37	-0.22696					26	16	2	0	0	0	0.6112	1	12649	12649		43.651	8.0325	1	122900			1213	12675	904	905	1737	1737					0.12360000405533356
ALDPLADKILI	11	Unmodified	_ALDPLADKILI_					0	0	0		ENST00000489345.5_1_20:5990447-6004030:+|nuORF;ENST00000609154.1_1_20:5988006-5996237:+|nuORF;nc|ENSG00000088766|Q9UJA2-2|CRLS1;ENSG00000088766|ENST00000378863|CRLS1	ENST00000489345.5_1_20:5990447-6004030:+|nuORF	ENST00000489345.5_1_20:5990447-6004030:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	591.3595581054688	2	591.360639	1180.70673	2.5475	0.0015065	-3.5026	-0.0020713	-0.9551	-0.00056481	591.3582010005824	130.25	0.78531	128.77	128.56	129.35	-1.4779					27	15	2	0	0	0	0.34475	2	12487	12487;12521		65.157	13.629	1	156150			1214	12675	904	905	1738;1739	1738					0.12360000405533356
ALDQAREIA	9	Unmodified	_ALDQAREIA_					0	0	0			REV__ENSG00000165917|ENST00000298854|RAPSN	REV__ENSG00000165917|ENST00000298854|RAPSN	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.7679138183594	2	493.766906	985.519259	-0.2047	-0.00010108	-1.2694	-0.00062678	-1.4741	-0.00072786	493.7666268521124	69.087	1.8109	65.596	65.212	67.023	-3.4902					122	36	6	0	0	0	0.21395	1	5187	5187		73.975	5.1879	1	4197400	+		1215	21138	905	906	1740	1740					0.025919819207956607
ALDQTMRGI	9	Unmodified	_ALDQTMRGI_					0	0	0			REV__ENST00000400864.3_1_19:55236001-55309429:+|nuORF	REV__ENST00000400864.3_1_19:55236001-55309429:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	502.76318359375	2	502.763309	1003.51206	1.2962	0.00065166	-1.3666	-0.00068706	-0.070404	-3.5396E-05	502.76247959947113	61.457	2.958	58.389	57.803	60.761	-3.0685					131	69	3	0	0	0	0.40818	1	2164	2164		51.193	6.8155	1	112640	+		1216	25404	906	907	1741	1741					0.010449260487234824
ALDRLLKT	8	Unmodified	_ALDRLLKT_					0	0	0		tr|A0A553SMS1|A0A553SMS1_NIACIGlutamatesynthasesmallsubunitOS=NialliacirculansOX=1397GN=gltDPE=4SV=1	tr|A0A553SMS1|A0A553SMS1_NIACIGlutamatesynthasesmallsubunitOS=NialliacirculansOX=1397GN=gltDPE=4SV=1	tr|A0A553SMS1|A0A553SMS1_NIACIGlutamatesynthasesmallsubunitOS=NialliacirculansOX=1397GN=gltDPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.2919921875	2	465.292559	928.570566	-0.57065	-0.00026552	-1.3969	-0.00064997	-1.9676	-0.00091549	465.29159208965166	101.51	1.6853	99.243	98.974	100.66	-2.2665					48	32	2	0	0	0	0.61436	1	9113	9113		60.972	4.5381	1	206120			1217	33866	907	908	1742	1742					0.10342350685516521
ALDSGASLLHL	11	Unmodified	_ALDSGASLLHL_					0	0	0		ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	MULTI-MSMS	OvCa9_classI_Rep2	2	548.8031616210938	2	548.803488	1095.59242	0.53241	0.00029219	-0.6842	-0.00037549	-0.15179	-8.3301E-05	548.8028955502664	113.84	1.0856	113.72	113.47	114.55	-0.11777					60	21	4	0	0	0	0.049847	1	10819	10819		143.89	58.726	1	187440			1218	8073	908	909	1743	1743					0.048451106434413305
ALDSGASLLHL	11	Unmodified	_ALDSGASLLHL_					0	0	0		ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	MULTI-MSMS	OvCa9_classI_Rep3	3	548.8027954101562	2	548.803488	1095.59242	-0.56488	-0.00031001	0.32256	0.00017702	-0.24232	-0.00013299	548.8034849136378	114.61	1.1354	113.55	113.25	114.39	-1.055					54	22	4	0	0	0	0.015323	3	8479	8467;8473;8479		157.33	54.109	1	215740			1219	8073	908	909	1744;1745;1746	1746					0.048451106434413305
ALDSGASLLHL	11	Unmodified	_ALDSGASLLHL_					0	0	0		ENSG00000183421|ENST00000332512|RIPK4;nc|ENSG00000183421|P57078|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	ENSG00000183421|ENST00000332512|RIPK4	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.8035278320312	2	548.803488	1095.59242	0.24968	0.00013702	-0.42303	-0.00023216	-0.17335	-9.5136E-05	548.8030569194756	114.93	1.6117	113.53	113.2	114.81	-1.3977					70	31	5	0	0	0	0.020704	1	10685	10685		153.04	43.557	1	252700			1220	8073	908	909	1747	1747					0.048451106434413305
ALDSQVPKV	9	Unmodified	_ALDSQVPKV_					0	0	0		nc|ENSG00000127084|Q5JSP0-2|FGD3;nc|ENSG00000127084|Q5JSP0-3|FGD3;ENSG00000127084|ENST00000375482|FGD3	nc|ENSG00000127084|Q5JSP0-2|FGD3	nc|ENSG00000127084|Q5JSP0-2|FGD3	MULTI-MSMS	OvCa99_classI_Rep5	1	478.7757568359375	2	478.7742	955.533846	0.54802	0.00026238	-0.14908	-7.1374E-05	0.39894	0.000191	478.77403173024754	72.552	1.0297	72.552	72.165	73.195	0					63	25	4	0	0	0	0.0085876	2	7080	7050;7080		176.44	57.702	1	10252000			1221	3818	909	910	1748;1749	1749					0.0543005406894963
ALDSTNVEA	9	Unmodified	_ALDSTNVEA_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	MULTI-MSMS	OvCa99_classI_Rep5	1	460.222900390625	2	460.221997	918.429441	0.1246	5.7343E-05	-0.068291	-3.1429E-05	0.056308	2.5914E-05	460.22189735923365	64.897	0.67564	64.897	64.71	65.385	0					44	16	5	0	0	0	0.010478	1	5927	5927		167.23	55.58	1	3088500			1222	2341	910	911	1750	1750					-0.03303692478425546
ALDSTNVEA	9	Unmodified	_ALDSTNVEA_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	460.221997	918.429441	0.76392	0.00035157	-0.43893	-0.00020201	0.32499	0.00014957	460.22173734816175	67.989	0.97702	64.499	64.186	65.163	-3.4902	-0.19892	-0.00022263	NaN	167.23	31	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72317			1223	2341	910	911							-0.03303692478425546
ALDWLTVAQS	10	Unmodified	_ALDWLTVAQS_					0	0	0			REV__ENSG00000260734|ENST00000561754|TLE7	REV__ENSG00000260734|ENST00000561754|TLE7	MULTI-SECPEP	OvCa9_classI_Rep2	2	551.8327026367188	2	552.290214	1102.56587	-0.068164	-3.7646E-05	1.7957	0.00099177	1.7276	0.00095413	552.2911682334317	99.498	1.3401	98.668	98.119	99.459	-0.83051					39	26	2	0	0	0	0.02661	1	9153	9153		40.778	16.259	1	26836	+		1224	23564	911	912	1751	1751					0.018694217520987877
ALDWLTVAQS	10	Unmodified	_ALDWLTVAQS_					0	0	0			REV__ENSG00000260734|ENST00000561754|TLE7	REV__ENSG00000260734|ENST00000561754|TLE7	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	552.290214	1102.56587	-1.0325	-0.00057025	3.3872	0.0018707	2.3547	0.0013005	552.2918967257332	100.8	0.71622	98.532	98.03	98.746	-2.2665	-0.11976	0.0011706	NaN	32.812	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28351	+		1225	23564	911	912							0.018694217520987877
ALDYLYKP	8	Unmodified	_ALDYLYKP_					0	0	0			REV__tr|A0A553SLA9|A0A553SLA9_NIACIUPF0398proteinCEQ21_20285OS=NialliacirculansOX=1397GN=CEQ21_20285PE=3SV=1	REV__tr|A0A553SLA9|A0A553SLA9_NIACIUPF0398proteinCEQ21_20285OS=NialliacirculansOX=1397GN=CEQ21_20285PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.7639465332031	2	491.765843	981.517133	2.0291	0.00099783	0.045546	2.2398E-05	2.0746	0.0010202	491.76574179421567	107.39	0.2886	107.39	107.27	107.56	0					9	6	2	0	0	0	0.028476	1	12102	12102		40.573	11.403	1	67970	+		1226	30207	912	913	1752	1752					0.02563553182983469
ALDYYEKS	8	Unmodified	_ALDYYEKS_					0	0	0		tr|A0A7D6VNY1|A0A7D6VNY1_9CLOTTetratricopeptiderepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14980PE=4SV=1	tr|A0A7D6VNY1|A0A7D6VNY1_9CLOTTetratricopeptiderepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14980PE=4SV=1	tr|A0A7D6VNY1|A0A7D6VNY1_9CLOTTetratricopeptiderepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14980PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	494.3006896972656	2	494.73474	987.454927	1.1095	0.00054892	3.2469	0.0016063	4.3564	0.0021553	494.7362359697673	126.6	0.47275	125.53	125.34	125.81	-1.0715					14	8	2	0	0	0	0.028476	1	9876	9876		29.15	0	1	18901			1227	34736	913	914	1753	1753					-0.039302179559967954
ALEDSKIK	8	Unmodified	_ALEDSKIK_					0	0	0		tr|A0A7D6VTI2|A0A7D6VTI2_9CLOTMBLfoldmetallo-hydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09135PE=4SV=1	tr|A0A7D6VTI2|A0A7D6VTI2_9CLOTMBLfoldmetallo-hydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09135PE=4SV=1	tr|A0A7D6VTI2|A0A7D6VTI2_9CLOTMBLfoldmetallo-hydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09135PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	452.26080322265625	2	452.260925	902.507297	0.4901	0.00022165	1.3925	0.00062978	1.8826	0.00085143	452.2614584886065	45.18	0.60467	45.18	44.977	45.582	0					27	13	4	0	0	0	0.62474	1	3114	3114		58.782	9.3404	1	514200			1228	35121	914	915	1754	1754					0.05214365177619129
ALEITDLL	8	Unmodified	_ALEITDLL_					0	0	0			REV__nc|ENSG00000105426|Q13332-7|PTPRS	REV__nc|ENSG00000105426|Q13332-7|PTPRS	MSMS	OvCa99_classI_Rep5	1	444.25885009765625	2	444.257851	886.501149	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.45	1	141.45	140.95	141.95	0								0	0	0	0.30129	1	16523	16523		60.294	2.4827	1		+		1229	17725	915	916	1755	1755					0.0533584694609317
ALEQKHGELNL	11	Unmodified	_ALEQKHGELNL_					0	0	0			REV__nc|ENSG00000180263|Q6ZV73-2|FGD6	REV__nc|ENSG00000180263|Q6ZV73-2|FGD6	MULTI-MSMS	OvCa9_classI_Rep2	2	626.3381958007812	2	626.338227	1250.6619	-0.68265	-0.00042757	0.64655	0.00040496	-0.036102	-2.2612E-05	626.338481713203	123.13	1.2816	122.91	122.51	123.79	-0.21803					72	25	4	0	0	0	0.68021	1	11927	11927		36.447	0	1	275140	+		1230	22166	916	917	1756	1756					0.04659569592217849
ALEQVNIKPLI	11	Unmodified	_ALEQVNIKPLI_					0	0	0		tr|A0A553SL49|A0A553SL49_NIACIYpdAfamilyputativebacillithioldisulfidereductaseOS=NialliacirculansOX=1397GN=ypdAPE=4SV=1	tr|A0A553SL49|A0A553SL49_NIACIYpdAfamilyputativebacillithioldisulfidereductaseOS=NialliacirculansOX=1397GN=ypdAPE=4SV=1	tr|A0A553SL49|A0A553SL49_NIACIYpdAfamilyputativebacillithioldisulfidereductaseOS=NialliacirculansOX=1397GN=ypdAPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	619.3812866210938	2	619.379363	1236.74417	0.48669	0.00030145	1.4251	0.0008827	1.9118	0.0011841	619.3802041761261	103.23	1.6041	103.23	102.93	104.54	0					95	37	4	0	0	0	0.5466	1	11519	11519		49.536	1.5765	1	5898300			1231	33684	917	918	1757	1757					0.1352709167113062
ALERRVVPL	9	Unmodified	_ALERRVVPL_					0	0	0			REV__ENST00000587013.5_1_19:38882915-38886805:+|nuORF	REV__ENST00000587013.5_1_19:38882915-38886805:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	526.8319091796875	2	526.832383	1051.65021	-0.02688	-1.4162E-05	2.9838	0.001572	2.9569	0.0015578	526.8321214850487	69.898	2.0087	67.178	66.856	68.864	-2.7196					118	39	6	0	0	0	0.53957	2	3149	3149;3206		38.806	5.2042	1	1842000	+		1232	27871	918	919	1758;1759	1758					0.12645417359499334
ALERTPSLILV	11	Unmodified	_ALERTPSLILV_					0	0	0			REV__ENSG00000088205|ENST00000263239|DDX18	REV__ENSG00000088205|ENST00000263239|DDX18	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3694458007812	2	606.371538	1210.72852	-3.14	-0.001904	-0.05994	-3.6346E-05	-3.1999	-0.0019404	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.72466	1	15046	15046		19.997	0	1	257720	+		1233	17173	919	920	1760	1760					0.13158805154080255
ALESICLLL	9	Unmodified	_ALESICLLL_					0	0	0		DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.F3496Wfs*92|1|0.14|ENSG00000197102|chr14:102034043-102034044|-/GACCTGGCAGCTGTCGAGGC|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	487.78411865234375	2	487.783179	973.551804	0.93563	0.00045638	1.1679	0.00056967	2.1035	0.0010261	487.7835429881119	156.22	1.465	156.22	155.68	157.15	0					56	28	3	0	0	0	0.22913	1	18302	18302		71.378	0.082209	1	192870			1234	767	920	921	1761	1761					0.06397052999443531
ALETVDILV	9	Unmodified	_ALETVDILV_					0	0	0		tr|A0A553SFQ0|A0A553SFQ0_NIACIMolybdopterinmolybdenumtransferaseOS=NialliacirculansOX=1397GN=CEQ21_09205PE=3SV=1	tr|A0A553SFQ0|A0A553SFQ0_NIACIMolybdopterinmolybdenumtransferaseOS=NialliacirculansOX=1397GN=CEQ21_09205PE=3SV=1	tr|A0A553SFQ0|A0A553SFQ0_NIACIMolybdopterinmolybdenumtransferaseOS=NialliacirculansOX=1397GN=CEQ21_09205PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.7850341796875	2	486.784233	971.553913	-0.65795	-0.00032028	1.7634	0.00085839	1.1054	0.00053811	486.7849740245438	73.688	1.2894	71.201	70.727	72.016	-2.4873					78	25	4	0	0	0	0.44294	1	3633	3633		47.916	0	1	611920			1235	33062	921	922	1762	1762					0.06699805008906878
ALFAAEDIPM	10	Unmodified	_ALFAAEDIPM_					0	0	0			REV__tr|A0A7D6ZU92|A0A7D6ZU92_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23235PE=4SV=1	REV__tr|A0A7D6ZU92|A0A7D6ZU92_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23235PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	539.2720336914062	2	539.267893	1076.52123	-0.34888	-0.00018814	3.4826	0.0018781	3.1338	0.0016899	539.2695931803694	66.957	1.5716	63.467	63.148	64.72	-3.4902					57	31	3	0	0	0	0.6104	1	4906	4906		40.778	0	1	614020	+		1236	32216	922	923	1763	1763					-0.013967253856208117
ALFEEELARL	10	Unmodified	_ALFEEELARL_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;STAB1|p.G1393Afs*11|1|0.46|ENSG00000010327|chr3:52516388-52516389|-/C|frameshift_variant	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	595.82373046875	2	595.824421	1189.63429	-1.5312	-0.0009123	1.5937	0.00094959	0.06259	3.7292E-05	595.825240376017	125.54	1.0893	124.13	123.83	124.92	-1.4143					43	21	3	0	0	0	0.52439	1	11924	11924		51.193	11.135	1	106900			1237	945	923	924	1764	1764					0.04705666331960856
ALFEEELARL	10	Unmodified	_ALFEEELARL_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;STAB1|p.G1393Afs*11|1|0.46|ENSG00000010327|chr3:52516388-52516389|-/C|frameshift_variant	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	595.824421	1189.63429	-0.15844	-9.4404E-05	0.38193	0.00022756	0.22349	0.00013316	595.8245161834632	124.34	0.93671	124.11	123.88	124.82	-0.23193	-0.0243	0.00031329	NaN	51.193	46	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100820			1238	945	923	924							0.04705666331960856
ALFEEELARL	10	Unmodified	_ALFEEELARL_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;STAB1|p.G1393Afs*11|1|0.46|ENSG00000010327|chr3:52516388-52516389|-/C|frameshift_variant	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	595.824421	1189.63429	2.1748	0.0012958	-1.8925	-0.0011276	0.28222	0.00016815	595.8232355088572	125.21	1.038	124.16	123.9	124.94	-1.0519	0.029717	-0.0023971	NaN	51.193	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94837			1239	945	923	924							0.04705666331960856
ALFEGKVQL	9	Unmodified	_ALFEGKVQL_					0	0	0		ENSG00000157796|ENST00000399820|WDR19;nc|ENSG00000157796|Q8NEZ3-2|WDR19;ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENSG00000157796|ENST00000399820|WDR19	ENSG00000157796|ENST00000399820|WDR19	MULTI-MSMS	OvCa99_classI_Rep5	1	502.793212890625	2	502.792392	1003.57023	2.6084	0.0013115	-1.0272	-0.00051647	1.5812	0.00079501	502.79164340353145	100.71	0.66044	100.71	100.4	101.06	0					29	15	2	0	0	0	0.049969	1	11171	11171		118.74	22.553	1	5269300			1240	5911	924	925	1765	1765					0.06858930965665877
ALFEGKVQL	9	Unmodified	_ALFEGKVQL_					0	0	0		ENSG00000157796|ENST00000399820|WDR19;nc|ENSG00000157796|Q8NEZ3-2|WDR19;ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENSG00000157796|ENST00000399820|WDR19	ENSG00000157796|ENST00000399820|WDR19	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.7930603027344	2	502.792392	1003.57023	-0.58282	-0.00029304	0.27384	0.00013768	-0.30898	-0.00015535	502.7924044242947	102.6	1.5701	100.4	100.1	101.67	-2.1994					54	29	3	0	0	0	0.44568	1	9244	9244		47.657	1.6851	1	177620			1241	5911	924	925	1766	1766					0.06858930965665877
ALFEGKVQL	9	Unmodified	_ALFEGKVQL_					0	0	0		ENSG00000157796|ENST00000399820|WDR19;nc|ENSG00000157796|Q8NEZ3-2|WDR19;ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENSG00000157796|ENST00000399820|WDR19	ENSG00000157796|ENST00000399820|WDR19	MULTI-MATCH	OvCa9_classI_Rep2	2		2	502.792392	1003.57023	-1.7032	-0.00085633	1.246	0.00062648	-0.45716	-0.00022986	502.79287151680506	101.17	1.4372	100.4	100.07	101.51	-0.76401	-0.084614	0.00054839	NaN	118.74	54	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152200			1242	5911	924	925							0.06858930965665877
ALFEGKVQL	9	Unmodified	_ALFEGKVQL_					0	0	0		ENSG00000157796|ENST00000399820|WDR19;nc|ENSG00000157796|Q8NEZ3-2|WDR19;ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENSG00000157796|ENST00000399820|WDR19	ENSG00000157796|ENST00000399820|WDR19	MULTI-MATCH	OvCa9_classI_Rep3	3		2	502.792392	1003.57023	-1.1046	-0.00055537	1.3016	0.00065444	0.19705	9.9076E-05	502.79261307362907	101.96	1.5674	100.44	100.11	101.68	-1.5211	-0.052244	0.00060432	NaN	118.74	66	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201680			1243	5911	924	925							0.06858930965665877
ALFFAAVAIV	10	Unmodified	_ALFFAAVAIV_					0	0	0		ENSG00000087111|ENST00000308360|PIGS;ENST00000577594.5_1_17:26890803-26898514:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS;ENST00000583631.1_1_17:26890919-26898285:-|nuORF;PIGS-SPAG5|1|fusion	ENSG00000087111|ENST00000308360|PIGS;PIGS-SPAG5|1|fusion	PIGS-SPAG5|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.3096618652344	2	511.307678	1020.6008	-2.2872	-0.0011695	-2.6789	-0.0013697	-4.9661	-0.0025392	511.30629637812297	126.63	0.24784	125.22	125.02	125.27	-1.4143					7	4	2	0	0	0	0.027147	1	12037	12037		19.36	0	1	6500.3			1244	15499;1763	925	926	1767	1767					0.09132709350706136
ALFFLIGSDYA	11	Unmodified	_ALFFLIGSDYA_					0	0	0			REV__sp|P16779|UL38_HCMVAApoptosisinhibitorUL38OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL38PE=3SV=1	REV__sp|P16779|UL38_HCMVAApoptosisinhibitorUL38OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL38PE=3SV=1	MSMS	OvCa99_classI_Rep5	1	608.8169555664062	2	608.816064	1215.61758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	163.38	1	163.38	162.88	163.88	0								0	0	0	0.19474	1	19104	19104		16.473	1.6083	1		+		1245	29412	926	927	1768	1768					0.018391654460174323
ALFGASIAVGV	11	Unmodified	_ALFGASIAVGV_					0	0	0			REV__nc|ENSG00000204161|Q5T292|TMEM273	REV__nc|ENSG00000204161|Q5T292|TMEM273	MULTI-MSMS	OvCa99_classI_Rep5	1	502.7922058105469	2	502.792392	1003.57023	2.6084	0.0013115	-1.0272	-0.00051647	1.5812	0.00079501	502.79164340353145	100.71	0.66044	100.71	100.4	101.06	0					29	15	2	0	0	0	0.2039	1	11203	11203		79.451	5.196	1	5269300	+		1246	23130	927	928	1769	1769					0.06858930965665877
ALFHGKLID	9	Unmodified	_ALFHGKLID_					0	0	0		ENST00000466609.1_1_3:98378565-98379411:+|nuORF	ENST00000466609.1_1_3:98378565-98379411:+|nuORF	ENST00000466609.1_1_3:98378565-98379411:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	507.2939147949219	2	507.292559	1012.57057	2.6691	0.001354	-0.43205	-0.00021917	2.237	0.0011348	507.29238434407523	107.65	0.41937	107.65	107.4	107.82	0					23	9	3	0	0	0	0.19716	1	12149	12149		76.847	8.0598	1	1360500			1247	12294	928	929	1770	1770					0.06478350685517853
ALFKKIEV	8	Unmodified	_ALFKKIEV_					0	0	0			REV__ENST00000462159.1_1_1:100573356-100598412:-|nuORF	REV__ENST00000462159.1_1_1:100573356-100598412:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.7902526855469	2	474.299853	946.585153	-2.017	-0.00095664	-0.8838	-0.00041918	-2.9008	-0.0013758	474.29927512676136	103.8	0.42142	103.8	103.69	104.11	0					17	9	2	0	0	0	0.028476	1	11599	11599		24.203	4.8428	1	292490	+		1248	20501	929	930	1771	1771					0.10972422833663131
ALFKRVVF	8	Unmodified	_ALFKRVVF_					0	0	0		ENSG00000267221|ENST00000587304|C17orf113	ENSG00000267221|ENST00000587304|C17orf113	ENSG00000267221|ENST00000587304|C17orf113	MULTI-SECPEP	OvCa9_classI_Rep3	3	490.2767639160156	2	490.308013	978.601472	-1.4438	-0.0007079	3.3915	0.0016629	1.9477	0.00095498	490.31082855509567	86.168	0.4507	83.947	83.536	83.987	-2.2204					9	8	2	0	0	0	0.028476	1	5086	5086		21.702	3.3779	1	11347			1249	9532	930	931	1772	1772					0.1113154879042213
ALFLRQQSL	9	Unmodified	_ALFLRQQSL_					0	0	0		nc|ENSG00000051009|Q8N612-2|FHIP1B;nc|ENSG00000051009|Q8N612-3|FHIP1B;ENSG00000051009|ENST00000449352|FHIP1B	nc|ENSG00000051009|Q8N612-2|FHIP1B	nc|ENSG00000051009|Q8N612-2|FHIP1B	MULTI-MSMS	OvCa9_classI_Rep2	2	538.3154907226562	2	538.316566	1074.61858	-0.21584	-0.00011619	-0.97863	-0.00052681	-1.1945	-0.00064301	538.315698991444	71.466	1.8309	68.959	68.281	70.112	-2.5072					83	34	4	0	0	0	0.21395	1	5772	5772		73.975	0	1	1027100			1250	14874	931	932	1773	1773					0.0842542460554796
ALFLRQQSL	9	Unmodified	_ALFLRQQSL_					0	0	0		nc|ENSG00000051009|Q8N612-2|FHIP1B;nc|ENSG00000051009|Q8N612-3|FHIP1B;ENSG00000051009|ENST00000449352|FHIP1B	nc|ENSG00000051009|Q8N612-2|FHIP1B	nc|ENSG00000051009|Q8N612-2|FHIP1B	MULTI-MSMS	OvCa9_classI_Rep3	3	538.316162109375	2	538.316566	1074.61858	1.2512	0.00067356	-1.258	-0.00067723	-0.0068149	-3.6686E-06	538.3155795894885	71.752	2.0773	69.15	68.782	70.859	-2.6023					139	41	5	0	0	0	0.071436	1	3372	3372		106.42	18.661	1	1426400			1251	14874	931	932	1774	1774					0.0842542460554796
ALFLSCCLN	9	Unmodified	_ALFLSCCLN_					0	0	0			REV__ENSG00000162618|ENST00000370742|ADGRL4	REV__ENSG00000162618|ENST00000370742|ADGRL4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.7704162597656	2	492.238081	982.461609	0.030777	1.515E-05	4.1118	0.002024	4.1426	0.0020392	492.2400477588491	46.94	0.6165	43.867	43.655	44.272	-3.0724					16	11	2	0	0	0	0.027462	1	2495	2495		27.882	2.3082	1	36115	+		1252	20755	932	933	1775	1775					-0.030323196006293074
ALFLTLTTK	9	Unmodified	_ALFLTLTTK_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.3099060058594	2	504.310418	1006.60628	0.45939	0.00023167	-0.74535	-0.00037589	-0.28597	-0.00014422	504.3099216930284	110.12	1.3686	108.51	108.07	109.44	-1.6011					53	25	3	0	0	0	0.029147	1	10122	10122		136.27	59.494	1	299630			1253	8852	933	934	1776	1776					0.1032438814249872
ALFLTLTTK	9	Unmodified	_ALFLTLTTK_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	504.310418	1006.60628	-0.34809	-0.00017555	0.18694	9.4278E-05	-0.16115	-8.1269E-05	504.31039047230655	108.72	1.0382	108.5	108.22	109.26	-0.22498	0.015812	0.00031484	NaN	136.27	39	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210330			1254	8852	933	934							0.1032438814249872
ALFLTLTTK	9	Unmodified	_ALFLTLTTK_					0	0	0		ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	504.310418	1006.60628	-0.63388	-0.00031967	0.15999	8.0683E-05	-0.47389	-0.00023899	504.31035423836596	109.57	1.1023	108.43	108.09	109.19	-1.1444	-0.050473	0.00028765	NaN	136.27	46	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262510			1255	8852	933	934							0.1032438814249872
ALFMKQIYL	9	Unmodified	_ALFMKQIYL_					0	0	0		nc|ENSG00000132321|Q86XH1-5|IQCA1;ENSG00000132321|ENST00000409907|IQCA1;nc|ENSG00000132321|Q86XH1-2|IQCA1	nc|ENSG00000132321|Q86XH1-5|IQCA1	nc|ENSG00000132321|Q86XH1-5|IQCA1	MULTI-MSMS	OvCa99_classI_Rep5	1	563.8217163085938	2	563.820095	1125.62564	2.3043	0.0012992	-2.2729	-0.0012815	0.031393	1.77E-05	563.8182730920248	120.11	0.59604	120.11	119.88	120.47	0					29	14	3	0	0	0	0.22961	1	13795	13795		71.296	17.944	1	909460			1256	4126	934	935	1777	1777					0.0678502116177242
ALFPHLLQPVL	11	Unmodified	_ALFPHLLQPVL_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	OvCa99_classI_Rep5	1	624.3812255859375	2	624.379166	1246.74378	0.81282	0.00050751	1.4941	0.00093289	2.3069	0.0014404	624.3799855040452	142.4	0.99649	142.4	141.93	142.93	0					54	19	4	0	0	0	0.46066	2	16641	16617;16641		56.721	17.468	1	734650			1257	3633	935	936	1778;1779	1779					0.13027716741930817
ALFQRPPLI	9	Unmodified	_ALFQRPPLI_					0	0	0		ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1	ENSG00000130826|ENST00000369550|DKC1	ENSG00000130826|ENST00000369550|DKC1	MULTI-MSMS	OvCa99_classI_Rep5	1	527.8245849609375	2	527.824027	1053.6335	1.294	0.00068299	0.59856	0.00031593	1.8925	0.00099893	527.8242156927176	111.99	0.82832	111.99	111.6	112.43	0					43	17	3	0	0	0	0.043206	2	12722	12722;12745		123.99	44.276	1	1199200			1258	4020	936	937	1780;1781	1780					0.10882916473565274
ALFQRPPLI	9	Unmodified	_ALFQRPPLI_					0	0	0		ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1	ENSG00000130826|ENST00000369550|DKC1	ENSG00000130826|ENST00000369550|DKC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.8235473632812	2	527.824027	1053.6335	-0.28359	-0.00014968	-0.40926	-0.00021602	-0.69285	-0.0003657	527.8236720009996	113.4	1.0219	111.95	111.51	112.53	-1.4461					45	20	4	0	0	0	0.44294	1	10506	10506		47.916	5.4411	1	117720			1259	4020	936	937	1782	1782					0.10882916473565274
ALFQRPPLI	9	Unmodified	_ALFQRPPLI_					0	0	0		ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1	ENSG00000130826|ENST00000369550|DKC1	ENSG00000130826|ENST00000369550|DKC1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	527.824027	1053.6335	0.10446	5.5138E-05	-0.84571	-0.00044639	-0.74125	-0.00039125	527.8237268718005	112.03	1.0843	111.89	111.57	112.66	-0.13844	-0.050738	-0.00084168	NaN	123.99	54	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93732			1260	4020	936	937							0.10882916473565274
ALFVRLLALA	10	Unmodified	_ALFVRLLALA_					0	0	0		ENSG00000120708|ENST00000442011|TGFBI;ENST00000504185.5_1_5:135364744-135380547:+|nuORF	ENSG00000120708|ENST00000442011|TGFBI	ENSG00000120708|ENST00000442011|TGFBI	MULTI-MSMS	OvCa99_classI_Rep5	1	543.8567504882812	2	543.855327	1085.6961	1.1489	0.00062482	0.72449	0.00039402	1.8734	0.0010188	543.8556681384819	145.51	0.60416	145.51	145.27	145.88	0					29	12	3	0	0	0	0.53885	1	17020	17020		49.442	16.629	1	119560			1261	3447	937	938	1783	1783					0.1566806254174935
ALGAALLLSSI	11	Unmodified	_ALGAALLLSSI_					0	0	0		nc|ENSG00000111799|Q99715-4|COL12A1;ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-2|COL12A1;COL12A1|p.T111Qfs*50|1|0.07|ENSG00000111799|chr6:75192215-75192215|T/-|frameshift_variant	nc|ENSG00000111799|Q99715-4|COL12A1	nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-SECPEP	OvCa9_classI_Rep3	3	514.797607421875	2	514.82115	1027.62775	-0.21875	-0.00011262	-0.29042	-0.00014951	-0.50916	-0.00026213	514.8209564456415	116.41	2.0284	115.37	115.05	117.07	-1.0414					88	40	4	0	0	0	0.025496	1	8881	8881		32.812	10.853	1	744500			1262	2854	938	939	1784	1784					0.11503773171239118
ALGAGGVLALP	11	Unmodified	_ALGAGGVLALP_					0	0	0			REV__ENST00000502487.5_1_19:49458292-49458571:+|nuORF	REV__ENST00000502487.5_1_19:49458292-49458571:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.783447265625	2	469.78711	937.559667	-0.82231	-0.00038631	-0.58894	-0.00027668	-1.4112	-0.00066299	469.7865933170313	72.641	1.0185	69.245	68.96	69.979	-3.3961					35	20	2	0	0	0	0.025604	1	5618	5618		71.378	47.175	1	231100	+		1263	26825	939	940	1785	1785					0.08838948311222339
ALGAGGVLALP	11	Unmodified	_ALGAGGVLALP_					0	0	0			REV__ENST00000502487.5_1_19:49458292-49458571:+|nuORF	REV__ENST00000502487.5_1_19:49458292-49458571:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	469.78711	937.559667	0.40152	0.00018863	-1.2824	-0.00060247	-0.88091	-0.00041384	469.7863464106907	71.602	1.4134	69.095	68.699	70.112	-2.5071	-0.07503	-0.00035812	NaN	71.378	35	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65606	+		1264	26825	939	940							0.08838948311222339
ALGATLVPK	9	Unmodified	_ALGATLVPK_					0	0	0		ENST00000244513.10_1_6:26501884-26501968:+|nuORF	ENST00000244513.10_1_6:26501884-26501968:+|nuORF	ENST00000244513.10_1_6:26501884-26501968:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	434.287353515625	2	435.276378	868.538203	-0.63921	-0.00027823	0.23371	0.00010173	-0.4055	-0.0001765	435.2763517361908	84.567	0.63657	82.306	82.067	82.704	-2.261					16	12	2	0	0	0	0.027425	1	4954	4954		24.203	0	1	23846			1265	9769	940	941	1786	1786					0.09867563282523406
ALGAVSEDPK	10	Unmodified	_ALGAVSEDPK_					0	0	0		tr|A0A7D7AFL3|A0A7D7AFL3_9CLOTATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06135PE=3SV=1	tr|A0A7D7AFL3|A0A7D7AFL3_9CLOTATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06135PE=3SV=1	tr|A0A7D7AFL3|A0A7D7AFL3_9CLOTATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06135PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.7859191894531	2	493.761289	985.508025	-0.81671	-0.00040326	-0.17702	-8.7404E-05	-0.99373	-0.00049067	493.7624584361885	42.534	0.50716	39.553	39.216	39.723	-2.9804					15	9	2	0	0	0	0.027513	1	1946	1946		58.782	0	1	18030			1266	36257	941	942	1787	1787					0.014691598266722394
ALGAVVRLAL	10	Unmodified	_ALGAVVRLAL_					0	0	0			REV__TMEM62|p.A601Lfs*11|1|0.07|ENSG00000137842|chr15:43184454-43184454|A/-|frameshift_variant	REV__TMEM62|p.A601Lfs*11|1|0.07|ENSG00000137842|chr15:43184454-43184454|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	491.82452392578125	2	491.824027	981.633501	0.46179	0.00022712	-0.7084	-0.00034841	-0.24661	-0.00012129	491.82354825905855	68.425	1.4991	65.61	65.262	66.761	-2.8144					71	29	4	0	0	0	0.61209	1	2959	2959		40.573	4.9543	1	317880	+		1267	19488	942	943	1788	1788					0.14194916473547892
ALGCLPPSPD	10	Unmodified	_ALGCLPPSPD_					0	0	0		ENST00000588360.1_1_19:11471945-11474676:+|nuORF;nc|ENSG00000105520|Q96GM1|PLPPR2;nc|ENSG00000105520|Q96GM1-2|PLPPR2;ENSG00000105520|ENST00000688289|PLPPR2	ENST00000588360.1_1_19:11471945-11474676:+|nuORF	ENST00000588360.1_1_19:11471945-11474676:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.7415466308594	2	485.239135	968.463718	-0.71856	-0.00034867	-2.8264	-0.0013715	-3.5449	-0.0017201	485.2377097771366	70.831	1.113	67.374	66.614	67.727	-3.4563					37	22	3	0	0	0	0.026822	1	5327	5327		23.042	3.939	1	287300			1268	2468	943	944	1789	1789					-0.021775675911726466
ALGDCWLLAAI	11	Unmodified	_ALGDCWLLAAI_					0	0	0		ENSG00000014216|ENST00000279247|CAPN1;chr11:65182562-65182701|394|11.08|0.31|5.17|+|ENST00000531068|CAPN1,CAPN1;ENSG00000162909|ENST00000295006|CAPN2;nc|ENSG00000162909|P17655-2|CAPN2	ENSG00000014216|ENST00000279247|CAPN1;ENSG00000162909|ENST00000295006|CAPN2	ENSG00000014216|ENST00000279247|CAPN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	573.3045043945312	2	573.30481	1144.59507	0.92398	0.00052972	0.49695	0.00028491	1.4209	0.00081463	573.3051413617451	67.553	1.325	64.062	63.689	65.014	-3.4902					68	26	4	0	0	0	0.52685	1	4978	4978		51.335	6.696	1	671470			1269	997;6246	944	945	1790	1790					0.028552427767408517
ALGDQNPLVL	10	Unmodified	_ALGDQNPLVL_					0	0	0		ENSG00000125531|ENST00000370097|FNDC11	ENSG00000125531|ENST00000370097|FNDC11	ENSG00000125531|ENST00000370097|FNDC11	MULTI-MSMS	OvCa9_classI_Rep3	3	520.29248046875	2	520.292756	1038.57096	0.027245	1.4175E-05	-0.61921	-0.00032217	-0.59196	-0.000308	520.2922960070027	118.39	1.0922	117.36	117.13	118.22	-1.0324					39	21	2	0	0	0	0.62299	1	8940	8940		39.253	2.0937	1	336460			1270	3715	945	946	1791	1791					0.053217256147036096
ALGEGTVREG	10	Unmodified	_ALGEGTVREG_					0	0	0			REV__tr|A0A553SIY6|A0A553SIY6_NIACIRibose5-phosphateisomeraseBOS=NialliacirculansOX=1397GN=rpiBPE=3SV=1	REV__tr|A0A553SIY6|A0A553SIY6_NIACIRibose5-phosphateisomeraseBOS=NialliacirculansOX=1397GN=rpiBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.7809143066406	2	494.756538	987.498523	0.28153	0.00013929	0.82762	0.00040947	1.1091	0.00054876	494.756475418642	47.818	0.50195	44.71	44.336	44.838	-3.1077					16	9	2	0	0	0	0.026891	1	2603	2603		31.53	0	1	16835	+		1271	29948	946	947	1792	1792					0.004273915411431517
ALGFGCAPGR	10	Unmodified	_ALGFGCAPGR_					0	0	0		ENST00000395989.7_3_20:50715116-50721421:-|nuORF	ENST00000395989.7_3_20:50715116-50721421:-|nuORF	ENST00000395989.7_3_20:50715116-50721421:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.2572326660156	2	474.739637	947.464721	2.2647	0.0010752	0.62009	0.00029438	2.8848	0.0013695	474.73987078476216	77.035	0.49571	77.035	76.841	77.336	0					17	11	2	0	0	0	0.026768	1	7782	7782		17.365	4.4058	1	342790			1272	11307	947	948	1793	1793					-0.011113084316093591
ALGFLIPIP	9	Unmodified	_ALGFLIPIP_					0	0	0			REV__tr|A0A553SK25|A0A553SK25_NIACIEndonucleaseMutS2OS=NialliacirculansOX=1397GN=mutS2PE=3SV=1	REV__tr|A0A553SK25|A0A553SK25_NIACIEndonucleaseMutS2OS=NialliacirculansOX=1397GN=mutS2PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	471.25592041015625	2	470.796946	939.57934	-1.315	-0.00061909	-3.4476	-0.0016231	-4.7626	-0.0022422	470.7948834171031	51.505	0.84301	48.692	48.353	49.196	-2.8129					23	16	2	0	0	0	0.027462	1	3385	3385		29.842	5.6388	1	32507	+		1273	30068	948	949	1794	1794					0.10713324321989148
ALGFYPAEITL	11	Unmodified	_ALGFYPAEITL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E;ENST00000606273.3_1_6:29692860-29693788:+|nuORF;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;HLA-F|p.D248Rfs*89|1|0.04|ENSG00000204642|chr6:29725161-29725162|-/A|frameshift_variant;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENSG00000234745|ENST00000412585|HLA-B;ENST00000383620.4_1_6:29857122-29858256:+|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	ENSG00000204592|ENST00000376630|HLA-E;nc|ENSG00000204642|P30511|HLA-F;ENSG00000234745|ENST00000412585|HLA-B;nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000206503|ENST00000376809|HLA-A	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa99_classI_Rep5	1	597.8255615234375	2	597.823889	1193.63323	1.1529	0.00068922	-0.038431	-2.2975E-05	1.1144	0.00066624	597.8241203157088	156.75	0.80249	156.75	156.45	157.25	0					34	15	4	0	0	0	0.26031	1	18374	18374		71.877	7.6702	1	285760			1274	9301;9098;9006;8996;9016	949	950	1795	1795					0.044154519630410505
ALGFYPAEITL	11	Unmodified	_ALGFYPAEITL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E;ENST00000606273.3_1_6:29692860-29693788:+|nuORF;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;HLA-F|p.D248Rfs*89|1|0.04|ENSG00000204642|chr6:29725161-29725162|-/A|frameshift_variant;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENSG00000234745|ENST00000412585|HLA-B;ENST00000383620.4_1_6:29857122-29858256:+|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	ENSG00000204592|ENST00000376630|HLA-E;nc|ENSG00000204642|P30511|HLA-F;ENSG00000234745|ENST00000412585|HLA-B;nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000206503|ENST00000376809|HLA-A	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8244018554688	2	597.823889	1193.63323	-4.1469	-0.0024791	4.2201	0.0025229	0.073187	4.3753E-05	597.8262965638429	152.69	0.95377	152.46	152.23	153.19	-0.22696					55	20	4	0	0	0	0.1183	4	15519	15519;15524;15530;15536		93.195	26.766	1	133350			1275	9301;9098;9006;8996;9016	949	950	1796;1797;1798;1799	1796					0.044154519630410505
ALGFYPAEITL	11	Unmodified	_ALGFYPAEITL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E;ENST00000606273.3_1_6:29692860-29693788:+|nuORF;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;HLA-F|p.D248Rfs*89|1|0.04|ENSG00000204642|chr6:29725161-29725162|-/A|frameshift_variant;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENSG00000234745|ENST00000412585|HLA-B;ENST00000383620.4_1_6:29857122-29858256:+|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	ENSG00000204592|ENST00000376630|HLA-E;nc|ENSG00000204642|P30511|HLA-F;ENSG00000234745|ENST00000412585|HLA-B;nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000206503|ENST00000376809|HLA-A	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8241577148438	2	597.823889	1193.63323	-3.9508	-0.0023619	4.3298	0.0025885	0.37898	0.00022656	597.8264327163745	153.21	0.96877	152.24	151.99	152.96	-0.97301					58	20	4	0	0	0	0.1632	10	13100	13090;13094;13100;13106;13118;13124;13130;13140;13146;13152		84.916	27.5	1	209360			1276	9301;9098;9006;8996;9016	949	950	1800;1801;1802;1803;1804;1805;1806;1807;1808;1809	1802					0.044154519630410505
ALGFYPAEITL	11	Unmodified	_ALGFYPAEITL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E;ENST00000606273.3_1_6:29692860-29693788:+|nuORF;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;HLA-F|p.D248Rfs*89|1|0.04|ENSG00000204642|chr6:29725161-29725162|-/A|frameshift_variant;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENSG00000234745|ENST00000412585|HLA-B;ENST00000383620.4_1_6:29857122-29858256:+|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	ENSG00000204592|ENST00000376630|HLA-E;nc|ENSG00000204642|P30511|HLA-F;ENSG00000234745|ENST00000412585|HLA-B;nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000206503|ENST00000376809|HLA-A	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8255615234375	2	597.823889	1193.63323	-3.5409	-0.0021169	3.5707	0.0021346	0.029766	1.7795E-05	597.8259099431253	153.72	1.0458	152.27	151.95	153	-1.4516					81	31	4	0	0	0	0.26031	3	15218	15208;15218;15228		71.877	17.101	1	181810			1277	9301;9098;9006;8996;9016	949	950	1810;1811;1812	1811					0.044154519630410505
ALGGARGPQ	9	Unmodified	_ALGGARGPQ_					0	0	0		ENST00000596372.1_1_19:58596054-58598820:-|nuORF;nc|ENSG00000121413|Q8TBC5-4|ZSCAN18;nc|ENSG00000121413|Q8TBC5-2|ZSCAN18;ENSG00000121413|ENST00000601144|ZSCAN18;nc|ENSG00000121413|Q8TBC5-3|ZSCAN18	ENST00000596372.1_1_19:58596054-58598820:-|nuORF	ENST00000596372.1_1_19:58596054-58598820:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.2259216308594	2	413.730126	825.4457	3.0872	0.0012773	2.5686	0.0010627	5.6557	0.0023399	413.73073836537304	86.879	0.45417	86.879	86.72	87.174	0					15	10	2	0	0	0	0.027462	1	9218	9218		26.796	8.4717	1	184840			1278	3483	950	951	1813	1813					0.02599478268996336
ALGGQKVLIN	10	Unmodified	_ALGGQKVLIN_					0	0	0			REV__tr|A0A7D6VPB1|A0A7D6VPB1_9CLOTDUF1304domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18040PE=4SV=1	REV__tr|A0A7D6VPB1|A0A7D6VPB1_9CLOTDUF1304domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18040PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	506.8093566894531	2	506.811116	1011.60768	-1.1259	-0.00057063	0.32757	0.00016601	-0.79835	-0.00040461	506.81130069607957	99.678	3.3722	98.848	98.219	101.59	-0.83051					157	66	4	0	0	0	0.24387	1	9117	9117		87.754	21.857	1	2351400	+		1279	31239	951	952	1814	1814					0.1023402223128187
ALGGSKLKHKV	11	Unmodified	_ALGGSKLKHKV_					0	0	0		ENST00000340855.10_2_X:148560860-148561013:-|nuORF	ENST00000340855.10_2_X:148560860-148561013:-|nuORF	ENST00000340855.10_2_X:148560860-148561013:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	569.3609008789062	2	569.358765	1136.70298	0.97733	0.00055645	2.6568	0.0015127	3.6342	0.0020692	569.360104766903	64.902	0.86053	61.909	61.696	62.557	-2.9933					35	16	3	0	0	0	0.7046	1	2558	2558		28.081	0.19925	1	41871			1280	10562	952	953	1815	1815					0.1400937542232441
ALGGSKLKHKV	11	Unmodified	_ALGGSKLKHKV_					0	0	0		ENST00000340855.10_2_X:148560860-148561013:-|nuORF	ENST00000340855.10_2_X:148560860-148561013:-|nuORF	ENST00000340855.10_2_X:148560860-148561013:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	569.358765	1136.70298	-0.43262	-0.00024631	3.7713	0.0021472	3.3387	0.0019009	569.3607907567178	64.615	1.0959	61.89	61.545	62.641	-2.7245	-0.099534	0.00066994	NaN	28.081	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61741			1281	10562	952	953							0.1400937542232441
ALGGSKLKHKV	11	Unmodified	_ALGGSKLKHKV_					0	0	0		ENST00000340855.10_2_X:148560860-148561013:-|nuORF	ENST00000340855.10_2_X:148560860-148561013:-|nuORF	ENST00000340855.10_2_X:148560860-148561013:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	569.358765	1136.70298	-0.39618	-0.00022557	3.1043	0.0017675	2.7081	0.0015419	569.360311682714	65.656	0.92033	62.171	61.889	62.81	-3.4854	0.18067	-8.9553E-05	NaN	28.081	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60912			1282	10562	952	953							0.1400937542232441
ALGGVLVGVV	10	Unmodified	_ALGGVLVGVV_					0	0	0		ENSG00000090020|ENST00000263980|SLC9A1;nc|ENSG00000090020|P19634-2|SLC9A1	ENSG00000090020|ENST00000263980|SLC9A1	ENSG00000090020|ENST00000263980|SLC9A1	MULTI-MSMS	OvCa99_classI_Rep5	1	442.28717041015625	2	442.284203	882.553853	0.18324	8.1046E-05	0.56848	0.00025143	0.75172	0.00033248	442.28444642559884	65.966	0.27019	65.966	65.904	66.174	0					11	6	2	0	0	0	0.5794	1	6092	6092		44.531	0	1	1438500			1283	1830	953	954	1816	1816					0.10787849799578453
ALGGYMDT	8	Unmodified	_ALGGYMDT_					0	0	0		tr|A0A7D6ZZ96|A0A7D6ZZ96_9CLOTVWAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05450PE=4SV=1	tr|A0A7D6ZZ96|A0A7D6ZZ96_9CLOTVWAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05450PE=4SV=1	tr|A0A7D6ZZ96|A0A7D6ZZ96_9CLOTVWAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05450PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.21044921875	2	414.183829	826.353105	0.012916	5.3496E-06	0.12438	5.1517E-05	0.1373	5.6867E-05	414.1840393149808	50.324	0.52627	50.324	50.114	50.64	0					22	11	3	0	0	0	0.028476	1	3794	3794		33.516	0	1	299980			1284	35951	954	955	1817	1817					-0.06701787579402207
ALGHILPTLV	10	Unmodified	_ALGHILPTLV_					0	0	0			REV__ENST00000316846.2_11:65545618-65547282:-|nuORF	REV__ENST00000316846.2_11:65545618-65547282:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.2630004882812	2	517.32386	1032.63317	-0.13919	-7.2008E-05	0.023338	1.2073E-05	-0.11585	-5.9934E-05	517.3237339245501	52.811	0.38939	52.811	52.61	52.999	0					13	8	2	0	0	0	0.027021	1	4162	4162		29.15	15.374	1	257410	+		1285	23517	955	956	1818	1818					0.11815496753706611
ALGHNATAI	9	Unmodified	_ALGHNATAI_					0	0	0		ENSG00000122756|ENST00000378980|CNTFR	ENSG00000122756|ENST00000378980|CNTFR	ENSG00000122756|ENST00000378980|CNTFR	MULTI-MSMS	OvCa9_classI_Rep4_	4	434.2389221191406	2	434.237784	866.461016	-0.36642	-0.00015911	0.055952	2.4297E-05	-0.31047	-0.00013482	434.2377917067733	54.866	1.9335	51.619	51.234	53.167	-3.2474					98	37	4	0	0	0	0.24951	1	3412	3412		68.787	10.005	1	2937400			1286	3556	956	957	1819	1819					0.022443450661853603
ALGHVTNYDID	11	Unmodified	_ALGHVTNYDID_					0	0	0			REV__nc|ENSG00000066651|Q7Z4G4-3|TRMT11	REV__nc|ENSG00000066651|Q7Z4G4-3|TRMT11	MULTI-SECPEP	OvCa99_classI_Rep5	1	406.5799865722656	3	406.531415	1216.57242	0.54182	0.00022027	-3.2159	-0.0013073	-2.674	-0.0010871	406.5300153839825	44.461	0.53514	44.461	44.215	44.75	0					22	11	3	0	0	0	0.025496	1	2977	2977		35.178	27.778	1	195730	+		1287	28725	957	958	1820	1820					-0.02720685087183483
ALGIAEGAIE	10	Unmodified	_ALGIAEGAIE_					0	0	0		tr|A0A7D6W3H3|A0A7D6W3H3_9CLOTAcyl-CoAdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09780PE=3SV=1	tr|A0A7D6W3H3|A0A7D6W3H3_9CLOTAcyl-CoAdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09780PE=3SV=1	tr|A0A7D6W3H3|A0A7D6W3H3_9CLOTAcyl-CoAdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09780PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.7576599121094	2	472.258382	942.502212	2.0802	0.00098241	-0.62537	-0.00029533	1.4549	0.00068708	472.2580482396048	78.151	0.98512	78.151	77.884	78.869	0					36	23	3	0	0	0	0.02649	1	7876	7876		60.972	2.19	1	1191800			1288	35452	958	959	1821	1821					0.02866061315000934
ALGIALIKGI	10	Unmodified	_ALGIALIKGI_					0	0	0		GPD1L|p.T119A|1|0.08|ENSG00000152642|chr3:32138716-32138716|A/G|missense_variant	GPD1L|p.T119A|1|0.08|ENSG00000152642|chr3:32138716-32138716|A/G|missense_variant	GPD1L|p.T119A|1|0.08|ENSG00000152642|chr3:32138716-32138716|A/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.2553405761719	2	484.828778	967.643003	-0.19898	-9.6472E-05	0.77448	0.00037549	0.5755	0.00027902	484.8290290545469	71.227	0.96175	71.227	70.954	71.916	0					41	23	3	0	0	0	0.026822	1	6856	6856		23.042	0	1	1972600			1289	14347	959	960	1822	1822					0.1578868475909303
ALGIQGGQS	9	Unmodified	_ALGIQGGQS_					0	0	0		ENST00000404976.5_1_2:37571756-37586754:+|nuORF;ENST00000338415.7_1_2:37571723-37579999:+|nuORF	ENST00000404976.5_1_2:37571756-37586754:+|nuORF	ENST00000404976.5_1_2:37571756-37586754:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	415.7221984863281	2	415.721967	829.429381	1.7526	0.00072857	-1.9593	-0.00081452	-0.20674	-8.5945E-05	415.72103499680065	120.01	1.8058	118.98	118.63	120.43	-1.0271					63	35	3	0	0	0	0.64339	1	9131	9131		26.796	1.3459	1	271890			1290	10538	960	961	1823	1823					0.007843523122460283
ALGKLAVGPG	10	Unmodified	_ALGKLAVGPG_					0	0	0		tr|A0A7D7A0R6|A0A7D7A0R6_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11100PE=4SV=1	tr|A0A7D7A0R6|A0A7D7A0R6_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11100PE=4SV=1	tr|A0A7D7A0R6|A0A7D7A0R6_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11100PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.7498474121094	2	441.774003	881.533452	1.0078	0.0004452	-1.8181	-0.0008032	-0.81037	-0.000358	441.7730586353788	86.365	0.93611	83.738	83.512	84.448	-2.6269					25	18	2	0	0	0	0.026892	1	7286	7286		18.324	1.8513	1	68227			1291	36006	961	962	1824	1824					0.08794679139759864
ALGKVFSF	8	Unmodified	_ALGKVFSF_					0	0	0		tr|A0A553SL91|A0A553SL91_NIACIAsparagine--tRNAligaseOS=NialliacirculansOX=1397GN=asnSPE=3SV=1	tr|A0A553SL91|A0A553SL91_NIACIAsparagine--tRNAligaseOS=NialliacirculansOX=1397GN=asnSPE=3SV=1	tr|A0A553SL91|A0A553SL91_NIACIAsparagine--tRNAligaseOS=NialliacirculansOX=1397GN=asnSPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	435.2403259277344	2	434.749996	867.485439	0.070715	3.0744E-05	-3.4676	-0.0015075	-3.3969	-0.0014768	434.74790890692515	49.285	0.38765	49.285	49.119	49.507	0					12	8	2	0	0	0	0.028476	1	3690	3690		30.504	14.862	1	119000			1292	33697	962	963	1825	1825					0.046396052197110293
ALGKVLLFV	9	Unmodified	_ALGKVLLFV_					0	0	0			REV__Tigger1_dup9834|chr14:19106484-19106883:-|1.64118294126502|0.2064126540684672|2.99|422.0|25|3|anti-sense	REV__Tigger1_dup9834|chr14:19106484-19106883:-|1.64118294126502|0.2064126540684672|2.99|422.0|25|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	480.3170471191406	2	480.318046	958.621539	0.60293	0.0002896	-0.4826	-0.0002318	0.12033	5.7799E-05	480.3176337071437	130.34	1.4398	130.11	129.86	131.3	-0.22697					62	28	4	0	0	0	0.59983	1	12834	12834		31.955	1.4512	1	107540	+		1293	29501	963	964	1826	1826					0.14057299730382056
ALGLCLLLVTV	11	Unmodified	_ALGLCLLLVTV_					0	0	0		ENSG00000173467|ENST00000310398|AGR3	ENSG00000173467|ENST00000310398|AGR3	ENSG00000173467|ENST00000310398|AGR3	MULTI-SECPEP	OvCa9_classI_Rep2	2	557.8211059570312	2	557.848853	1113.68315	0.5322	0.00029689	1.1357	0.00063357	1.6679	0.00093046	557.8501365409843	97.493	1.1305	96.535	96.068	97.199	-0.95856					27	22	2	0	0	0	0.02601	1	8905	8905		15.642	0.77694	1	15470			1294	7381	964	965	1827	1827					0.1308586336733697
ALGLGALGK	9	Unmodified	_ALGLGALGK_					0	0	0		tr|A0A553SUE2|A0A553SUE2_NIACIHlyC/CorCfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_06840PE=3SV=1	tr|A0A553SUE2|A0A553SUE2_NIACIHlyC/CorCfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_06840PE=3SV=1	tr|A0A553SUE2|A0A553SUE2_NIACIHlyC/CorCfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_06840PE=3SV=1	MSMS	OvCa99_classI_Rep5	1	400.2583923339844	2	400.255446	798.496338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.444	1	20.444	19.944	20.944	0								0	0	0	0.22957	1	29	29		21.702	0	1				1295	34600	965	966	1828	1828					0.08903007594005885
ALGLKCFR	8	Unmodified	_ALGLKCFR_					0	0	0		nc|ENSG00000148187|Q96E11-5|MRRF;nc|ENSG00000148187|Q96E11-6|MRRF;ENST00000373728.6_1_9:125027203-125047581:+|nuORF;nc|ENSG00000148187|Q96E11-4|MRRF;nc|ENSG00000148187|Q96E11-2|MRRF;nc|ENSG00000148187|Q96E11-8|MRRF;ENSG00000148187|ENST00000344641|MRRF	nc|ENSG00000148187|Q96E11-5|MRRF	nc|ENSG00000148187|Q96E11-5|MRRF	MULTI-SECPEP	OvCa99_classI_Rep5	1	454.2366027832031	2	454.262748	906.510943	-0.46653	-0.00021193	3.2096	0.001458	2.7431	0.0012461	454.26591694628115	50.342	0.87652	50.342	50.073	50.949	0					26	19	2	0	0	0	0.028476	1	3833	3833		28.254	8.8943	1	97827			1296	5390	966	967	1829	1829					0.05394756470491302
ALGLMLDILI	10	Unmodified	_ALGLMLDILI_					0	0	0			REV__ENSG00000119457|ENST00000374228|SLC46A2	REV__ENSG00000119457|ENST00000374228|SLC46A2	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.7764892578125	2	536.327753	1070.64095	2.5963	0.0013925	4.4185	0.0023698	7.0148	0.0037622	536.3299268106747	75.569	0.51355	75.569	75.209	75.723	0					22	12	2	0	0	0	0.026871	1	7480	7480		29.15	4.9468	1	350330	+		1297	18444	967	968	1830	1830					0.10845887958976164
ALGLNRPVL	9	Unmodified	_ALGLNRPVL_					0	0	0		ENSG00000006704|ENST00000424337|GTF2IRD1;nc|ENSG00000006704|Q9UHL9|GTF2IRD1;nc|ENSG00000006704|Q9UHL9-3|GTF2IRD1	ENSG00000006704|ENST00000424337|GTF2IRD1	ENSG00000006704|ENST00000424337|GTF2IRD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.7820739746094	2	476.800552	951.58655	-0.72046	-0.00034352	-3.8963	-0.0018578	-4.6168	-0.0022013	476.79808837567305	43.464	0.31575	40.457	40.326	40.641	-3.0074					9	5	2	0	0	0	0.027433	1	2083	2083		68.485	26.089	1	12678			1298	887	968	969	1831	1831					0.10882056922412175
ALGLSHGF	8	Unmodified	_ALGLSHGF_					0	0	0			REV__ENST00000528662.6_1_11:102584081-102593757:-|nuORF	REV__ENST00000528662.6_1_11:102584081-102593757:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.21710205078125	2	401.216321	800.418088	1.1808	0.00047377	-0.51855	-0.00020805	0.66229	0.00026572	401.2160795114764	60.259	0.60474	60.259	59.997	60.602	0					21	14	2	0	0	0	0.028476	1	5276	5276		9.4706	0	1	520530	+		1299	18379	969	970	1832	1832					0.009895750087707711
ALGLWLPL	8	Unmodified	_ALGLWLPL_					0	0	0			REV__ENSG00000099999|ENST00000382363|RNF215	REV__ENSG00000099999|ENST00000382363|RNF215	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.2674560546875	2	441.776014	881.537475	-0.56474	-0.00024949	4.1002	0.0018114	3.5355	0.0015619	441.7794224016904	62.742	0.33715	59.284	59.16	59.498	-3.4577					8	6	2	0	0	0	0.028476	1	4365	4365		43.626	0	1	13593	+		1300	17352	970	971	1833	1833					0.09196768633466945
ALGMTRILIL	10	Unmodified	_ALGMTRILIL_					0	0	0		ENST00000461096.6_1_1:109608773-109608839:-|nuORF	ENST00000461096.6_1_1:109608773-109608839:-|nuORF	ENST00000461096.6_1_1:109608773-109608839:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.806640625	2	550.846645	1099.67874	-0.60338	-0.00033237	-1.8127	-0.0009985	-2.416	-0.0013309	550.8459921912944	44.641	0.17722	44.641	44.573	44.75	0					6	3	2	0	0	0	0.026871	1	3040	3040		37.159	11.709	1	45850			1301	12169	971	972	1834	1834					0.1328839894445082
ALGNVRTV	8	Unmodified	_ALGNVRTV_					0	0	0		ENST00000470645.5_1_7:150732911-150733055:+|nuORF;ENST00000466514.5_1_7:150731570-150742433:+|nuORF;nc|ENSG00000197150|Q9NUT2-5|ABCB8;nc|ENSG00000197150|Q9NUT2-4|ABCB8;nc|ENSG00000197150|Q9NUT2-3|ABCB8;ENSG00000197150|ENST00000358849|ABCB8;nc|ENSG00000197150|Q9NUT2|ABCB8	ENST00000470645.5_1_7:150732911-150733055:+|nuORF	ENST00000470645.5_1_7:150732911-150733055:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	415.2494201660156	2	415.248152	828.481751	0.33854	0.00014058	-0.22823	-9.4771E-05	0.11031	4.5808E-05	415.2479452689324	54.152	0.8272	54.152	53.891	54.718	0					65	19	5	0	0	0	0.57336	1	4373	4373		69.628	7.5202	1	10566000			1302	12367	972	973	1835	1835					0.060649354458519156
ALGPDWHEGL	10	Unmodified	_ALGPDWHEGL_					0	0	0		nc|ENSG00000121350|Q8WU10-2|PYROXD1;ENSG00000121350|ENST00000240651|PYROXD1;ENST00000531301.1_1_11:106697120-106698287:-|nuORF	nc|ENSG00000121350|Q8WU10-2|PYROXD1	nc|ENSG00000121350|Q8WU10-2|PYROXD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.8433837890625	2	547.766906	1093.51926	-1.6175	-0.00088601	-0.79348	-0.00043464	-2.411	-0.0013207	547.7651663465696	72.767	0.53304	69.371	69.058	69.591	-3.3961					12	10	2	0	0	0	0.026822	1	5593	5593		10.866	0	1	11169			1303	3479	973	974	1836	1836					-0.023760180791896346
ALGPEGGRV	9	Unmodified	_ALGPEGGRV_					0	0	0		ENSG00000164736|ENST00000297316|SOX17	ENSG00000164736|ENST00000297316|SOX17	ENSG00000164736|ENST00000297316|SOX17	MULTI-MSMS	OvCa99_classI_Rep5	1	428.23944091796875	2	428.237784	854.461016	0.098815	4.2316E-05	0.71673	0.00030693	0.81554	0.00034925	428.2380836316657	51.228	0.51197	51.228	50.949	51.461	0					18	11	2	0	0	0	0.35444	1	3938	3938		56.721	9.9546	1	1410300			1304	6480	974	975	1837	1837					0.027963450661900424
ALGPGRRR	8	Unmodified	_ALGPGRRR_					0	0	0			REV__ENST00000588278.1_1_19:507506-508034:+|nuORF	REV__ENST00000588278.1_1_19:507506-508034:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	441.77008056640625	2	441.77266	881.530767	-6.5014	-0.0028722	-2.0165	-0.00089084	-8.518	-0.003763	441.7716874074609	163.93	0.24121	162.54	162.42	162.66	-1.3925					7	4	2	0	0	0	0.74209	1	14314	14314		12.959	4.1369	1	363100	+		1305	27885	975	976	1838	1838					0.08526268525463365
ALGPGRRR	8	Unmodified	_ALGPGRRR_					0	0	0			REV__ENST00000588278.1_1_19:507506-508034:+|nuORF	REV__ENST00000588278.1_1_19:507506-508034:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	441.77266	881.530767	-6.5014	-0.0028722	-2.0165	-0.00089084	-8.518	-0.003763	441.7716874074609	163.93	0.24121	162.54	162.42	162.66	-1.3925	0.039644	-5.5519E-06	NaN	12.959	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	363100	+		1306	27885	975	976							0.08526268525463365
ALGPLVLWK	9	Unmodified	_ALGPLVLWK_					0	0	0			REV__tr|A0A553SPW6|A0A553SPW6_NIACILincomycineffluxMFStransporterLmr(B)OS=NialliacirculansOX=1397GN=lmr(B)PE=4SV=1	REV__tr|A0A553SPW6|A0A553SPW6_NIACILincomycineffluxMFStransporterLmr(B)OS=NialliacirculansOX=1397GN=lmr(B)PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.80072021484375	2	498.81567	995.616788	-1.4226	-0.00070964	3.0601	0.0015264	1.6375	0.00081681	498.81643642564325	51.752	0.49457	48.939	48.601	49.096	-2.8129					11	9	2	0	0	0	0.027441	1	3399	3399		33.516	9.3128	1	13042	+		1307	30580	976	977	1839	1839					0.11880415587597781
ALGPLVTGL	9	Unmodified	_ALGPLVTGL_					0	0	0		ENSG00000114491|ENST00000232607|UMPS	ENSG00000114491|ENST00000232607|UMPS	ENSG00000114491|ENST00000232607|UMPS	MULTI-SECPEP	OvCa9_classI_Rep2	2	421.2379150390625	2	420.763104	839.511654	0.89327	0.00037586	4.2691	0.0017963	5.1624	0.0021721	420.76647808445296	65.138	0.20467	62.414	62.336	62.541	-2.7245					5	3	2	0	0	0	0.027462	1	5004	5004		37.028	1.8278	1	2766.1			1308	3024	977	978	1840	1840					0.08547874391183541
ALGPMAFRV	9	Unmodified	_ALGPMAFRV_					0	0	0		ENST00000520337.1_1_8:104387969-104388098:+|nuORF	ENST00000520337.1_1_8:104387969-104388098:+|nuORF	ENST00000520337.1_1_8:104387969-104388098:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	481.26959228515625	2	481.26803	960.521507	-1.2789	-0.00061551	-0.19271	-9.2744E-05	-1.4716	-0.00070826	481.26784996572366	104.43	0.55031	104.43	104.28	104.83	0					30	12	4	0	0	0	0.16524	1	11701	11701		82.305	37.774	1	1218200			1309	13102	978	979	1841	1841					0.03966739124916785
ALGPRPAPPE	10	Unmodified	_ALGPRPAPPE_					0	0	0			REV__ENSG00000185736|ENST00000381312|ADARB2	REV__ENSG00000185736|ENST00000381312|ADARB2	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.7637634277344	2	502.779816	1003.54508	1.6563	0.00083278	1.1683	0.00058738	2.8246	0.0014202	502.7803045911361	101.24	1.0168	101.24	101.02	102.04	0					43	23	3	0	0	0	0.026665	1	11318	11318		42.396	9.5837	1	1555600	+		1310	22524	979	980	1842	1842					0.043448761630770605
ALGQDRSAI	9	Unmodified	_ALGQDRSAI_					0	0	0		ENSG00000132874|ENST00000255226|SLC14A2	ENSG00000132874|ENST00000255226|SLC14A2	ENSG00000132874|ENST00000255226|SLC14A2	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.75360107421875	2	465.753798	929.493044	-0.081161	-3.7801E-05	-3.8228	-0.0017805	-3.904	-0.0018183	465.7514399168433	47.319	2.4038	44.246	42.876	45.279	-3.0724					87	46	3	0	0	0	0.3076	1	2583	2583		62.107	6.6032	1	2414500			1311	4182	980	981	1843	1843					0.025477127493331864
ALGQIWARKL	10	Unmodified	_ALGQIWARKL_					0	0	0		ENSG00000105552|ENST00000316273|BCAT2	ENSG00000105552|ENST00000316273|BCAT2	ENSG00000105552|ENST00000316273|BCAT2	MULTI-MSMS	OvCa99_classI_Rep5	1	578.3546142578125	2	578.353483	1154.69241	3.4508	0.0019958	-1.1551	-0.00066805	2.2958	0.0013278	578.3526744588883	88.319	0.79888	88.319	88.044	88.843	0					47	18	4	0	0	0	0.31157	1	9400	9400		79.451	11.957	1	2441300			1312	2470	981	982	1844	1844					0.12125392767870835
ALGQLIER	8	Unmodified	_ALGQLIER_					0	0	0			REV__ENSG00000123572|ENST00000243300|NRK	REV__ENSG00000123572|ENST00000243300|NRK	MSMS	OvCa9_classI_Rep3	3	450.26788330078125	2	450.269084	898.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.701	1	58.633	58.133	59.133	-3.0685								0	0	0	0.30129	1	2176	2176		26.796	1.3459	1		+		1313	18649	982	983	1845	1845					0.07029491134369437
ALGRGLFLKV	10	Unmodified	_ALGRGLFLKV_					0	0	0			REV__ENST00000418411.6_1_12:113540888-113573291:-|nuORF	REV__ENST00000418411.6_1_12:113540888-113573291:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.7890625	2	537.345126	1072.6757	0.19982	0.00010737	2.4631	0.0013235	2.6629	0.0014309	537.3464026982655	57.559	0.59026	57.559	57.309	57.899	0					22	13	2	0	0	0	0.02725	1	4829	4829		5.9211	0	1	466510	+		1314	18030	983	984	1846	1846					0.14226891881935444
ALGRGRGKQL	10	Unmodified	_ALGRGRGKQL_					0	0	0		ENST00000497505.5_1_2:203879607-203880885:+|nuORF	ENST00000497505.5_1_2:203879607-203880885:+|nuORF	ENST00000497505.5_1_2:203879607-203880885:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.2802124023438	2	528.325257	1054.63596	1.2314	0.00065059	0.94913	0.00050145	2.1805	0.001152	528.3270837630823	119.26	0.58729	119.26	118.91	119.5	0					28	12	3	0	0	0	0.026802	1	13669	13669		42.396	23.293	1	89316			1315	12809	984	985	1847	1847					0.11082764931234124
ALGRLLDKH	9	Unmodified	_ALGRLLDKH_					0	0	0		ENSG00000184166|ENST00000641833|OR1D2	ENSG00000184166|ENST00000641833|OR1D2	ENSG00000184166|ENST00000641833|OR1D2	MULTI-MSMS	OvCa9_classI_Rep2	2	511.80950927734375	2	511.808908	1021.60326	-1.8602	-0.00095206	1.7701	0.00090597	-0.090053	-4.609E-05	511.8096472275158	37.824	1.1833	35.115	34.83	36.013	-2.7097					51	23	4	0	0	0	0.55588	1	1726	1726		37.159	2.9866	1	203000			1316	8133	985	986	1848	1848					0.09332557808363617
ALGRPDGNL	9	Unmodified	_ALGRPDGNL_					0	0	0		ENSG00000173572|ENST00000342929|NLRP13	ENSG00000173572|ENST00000342929|NLRP13	ENSG00000173572|ENST00000342929|NLRP13	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.7680969238281	2	456.748516	911.482479	-0.44605	-0.00020373	3.0472	0.0013918	2.6012	0.0011881	456.7478043608631	67.914	0.67759	67.914	67.762	68.44	0					22	16	2	0	0	0	0.027462	1	6394	6394		42.396	6.7778	1	220990			1317	7390	986	987	1849	1849					0.023197300948936572
ALGSHRKAGF	10	Unmodified	_ALGSHRKAGF_					0	0	0		ENST00000521249.1_1_14:102697914-102698193:-|nuORF;ENST00000521766.5_1_14:102695648-102699035:-|nuORF;nc|ENSG00000080823|Q9UQ07-5|MOK;nc|ENSG00000080823|Q9UQ07-6|MOK;ENSG00000080823|ENST00000361847|MOK	ENST00000521249.1_1_14:102697914-102698193:-|nuORF	ENST00000521249.1_1_14:102697914-102698193:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.7789306640625	2	522.290882	1042.56721	-1.9809	-0.0010346	0.96106	0.00050195	-1.0198	-0.00053265	522.2907536850008	125.12	0.67458	123.72	123.49	124.16	-1.3908					24	12	3	0	0	0	0.026994	1	11920	11920		32.812	4.9302	1	24733			1318	1642	987	988	1850	1850					0.047631006314986735
ALGSLRTL	8	Unmodified	_ALGSLRTL_					0	0	0		ENSG00000137507|ENST00000260061|LRRC32	ENSG00000137507|ENST00000260061|LRRC32	ENSG00000137507|ENST00000260061|LRRC32	MULTI-SECPEP	OvCa99_classI_Rep5	1	416.58544921875	2	415.758352	829.502152	-0.15177	-6.3098E-05	0.059551	2.4759E-05	-0.092215	-3.8339E-05	415.7580675721062	69.79	0.37102	69.79	69.591	69.962	0					13	8	2	0	0	0	0.028476	1	6683	6683		17.365	0	1	225690			1319	4594	988	989	1851	1851					0.08058106105647767
ALGSNQTPLN	10	Unmodified	_ALGSNQTPLN_					0	0	0		ENST00000512677.1_1_3:130400389-130405090:-|nuORF	ENST00000512677.1_1_3:130400389-130405090:-|nuORF	ENST00000512677.1_1_3:130400389-130405090:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	507.7630310058594	2	507.764363	1013.51417	-0.98874	-0.00050205	-1.5604	-0.00079233	-2.5492	-0.0012944	507.76348195987015	116.06	1.5323	115.02	114.7	116.23	-1.0414					85	30	4	0	0	0	0.69073	1	8642	8642		31.53	3.2755	1	238760			1320	12998	989	990	1852	1852					0.007956780581935163
ALGTVTTTGVL	11	Unmodified	_ALGTVTTTGVL_					0	0	0		ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN	ENSG00000154358|ENST00000680850|OBSCN	ENSG00000154358|ENST00000680850|OBSCN	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.3270874023438	2	516.800414	1031.58628	-0.98712	-0.00051015	-3.6635	-0.0018933	-4.6506	-0.0024034	517.3007782600914	52.934	0.88876	50.12	49.788	50.677	-2.8139					21	17	2	0	0	0	0.025611	1	3570	3570		20.947	0	1	23613			1321	5731	990	991	1853	1853					0.07174592411888625
ALGVELFGKL	10	Unmodified	_ALGVELFGKL_					0	0	0		nc|ENSG00000100346|Q9P0X4-3|CACNA1I;nc|ENSG00000100346|Q9P0X4-2|CACNA1I;nc|ENSG00000100346|Q9P0X4-4|CACNA1I;ENSG00000100346|ENST00000402142|CACNA1I	nc|ENSG00000100346|Q9P0X4-3|CACNA1I	nc|ENSG00000100346|Q9P0X4-3|CACNA1I	MSMS	OvCa9_classI_Rep2	2	523.8156127929688	2	523.815867	1045.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.23	1	122.02	121.52	122.52	-0.21803								0	0	0	0.097973	1	11830	11830		96.19	11.03	1				1322	2051	991	992	1854	1854					0.0961979051680828
ALGVERALAL	10	Unmodified	_ALGVERALAL_					0	0	0		ENST00000405489.7_2_2:27435269-27435350:+|nuORF;ENST00000484646.1_1_2:27435071-27436167:+|nuORF;ENSG00000138085|ENST00000380171|ATRAID;nc|ENSG00000138085|Q6UW56-3|ATRAID	ENST00000405489.7_2_2:27435269-27435350:+|nuORF	ENST00000405489.7_2_2:27435269-27435350:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.81256103515625	2	506.811116	1011.60768	0.31561	0.00015995	-1.485	-0.00075259	-1.1694	-0.00059264	506.81045586251577	89.749	2.4253	87.174	86.704	89.129	-2.575					167	47	5	0	0	0	0.46756	1	7740	7740		58.782	2.0609	1	8441000			1323	4657	992	993	1855	1855					0.10234022231270501
ALGVGDQALI	10	Unmodified	_ALGVGDQALI_					0	0	0		ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.81201171875	2	478.7742	955.533846	0.49642	0.00023767	-0.69305	-0.00033182	-0.19663	-9.4143E-05	478.77325363168455	60.122	0.54085	56.692	56.456	56.996	-3.43					14	10	2	0	0	0	0.026639	1	4023	4023		53.351	16.192	1	20094			1324	9412	993	994	1856	1856					0.054300540689382615
ALGVGLLVVS	10	Unmodified	_ALGVGLLVVS_					0	0	0			REV__nc|ENSG00000188372|P21754-3|ZP3	REV__nc|ENSG00000188372|P21754-3|ZP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.2392272949219	2	464.29731	926.580068	2.5303	0.0011748	-0.17933	-8.3262E-05	2.3509	0.0010915	464.2969405413095	80.455	0.46826	80.455	80.234	80.702	0					16	10	2	0	0	0	0.027048	1	8242	8242		12.207	0	1	272700	+		1325	22711	994	995	1857	1857					0.1138411897103424
ALGVLFSDFL	10	Unmodified	_ALGVLFSDFL_					0	0	0			REV__ENSG00000186136|ENST00000334266|TAS2R42	REV__ENSG00000186136|ENST00000334266|TAS2R42	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2540893554688	2	541.30005	1080.58555	1.2998	0.0007036	-2.3771	-0.0012867	-1.0773	-0.00058312	541.2985370362306	109.29	0.48477	109.29	109.11	109.59	0					19	10	2	0	0	0	0.026915	1	12355	12355		44.117	1.7207	1	151210	+		1326	22559	995	996	1858	1858					0.04847797762840855
ALGVSPERAG	10	Unmodified	_ALGVSPERAG_					0	0	0			REV__ENST00000479155.1_1_17:18139124-18139430:+|nuORF	REV__ENST00000479155.1_1_17:18139124-18139430:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	478.7627868652344	2	478.761623	955.508694	-0.50998	-0.00024416	0.62859	0.00030094	0.11861	5.6784E-05	478.7617608972621	59.154	1.4598	59.154	58.892	60.352	0					64	37	3	0	0	0	0.46756	1	5066	5066		58.782	5.4305	1	2466400	+		1327	26429	996	997	1859	1859					0.029159992663721823
ALGVSPERAG	10	Unmodified	_ALGVSPERAG_					0	0	0			REV__ENST00000479155.1_1_17:18139124-18139430:+|nuORF	REV__ENST00000479155.1_1_17:18139124-18139430:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	478.761623	955.508694	-0.25436	-0.00012178	-1.6711	-0.00080004	-1.9254	-0.00092182	478.76055718167845	62.964	0.57697	59.495	59.297	59.874	-3.4695	0.17046	-0.0019306	NaN	58.782	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52509	+		1328	26429	996	997							0.029159992663721823
ALGVYVPMGG	10	Unmodified	_ALGVYVPMGG_					0	0	0			REV__ENST00000356978.8_1_14:90871631-90871697:+|nuORF	REV__ENST00000356978.8_1_14:90871631-90871697:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	482.7472839355469	2	482.252046	962.489538	-0.94933	-0.00045782	4.2944	0.002071	3.3451	0.0016132	482.253987156544	53.287	1.2107	50.079	49.602	50.813	-3.208					37	23	3	0	0	0	0.026839	1	3310	3310		26.796	0	1	80789	+		1329	24776	997	998	1860	1860					0.006793266511181173
ALHAAVIAI	9	Unmodified	_ALHAAVIAI_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000145703|ENST00000274364|IQGAP2	ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000145703|ENST00000274364|IQGAP2	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	439.77752685546875	2	439.776545	877.538538	3.7935	0.0016683	-0.7849	-0.00034518	3.0086	0.0013231	439.77603925402576	94.179	0.63724	94.179	93.923	94.56	0					35	14	4	0	0	0	0.14417	1	10232	10232		85.909	25.506	1	1594500			1330	4862;5238	998	999	1861	1861					0.09486983002352645
ALHAAVIAI	9	Unmodified	_ALHAAVIAI_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000145703|ENST00000274364|IQGAP2	ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000145703|ENST00000274364|IQGAP2	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	439.776545	877.538538	0.89885	0.00039529	-0.89787	-0.00039486	0.00097556	4.2903E-07	439.7760960302613	95.371	0.79336	94.342	94.12	94.913	-1.0281	0.049831	-6.8434E-05	NaN	85.909	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20207			1331	4862;5238	998	999							0.09486983002352645
ALHAAVIAI	9	Unmodified	_ALHAAVIAI_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000145703|ENST00000274364|IQGAP2	ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000145703|ENST00000274364|IQGAP2	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	439.776545	877.538538	1.0111	0.00044464	-0.70717	-0.000311	0.3039	0.00013365	439.77605955689774	96.782	0.64293	94.357	94.169	94.812	-2.4256	0.063922	9.9301E-05	NaN	85.909	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28596			1332	4862;5238	998	999							0.09486983002352645
ALHDLLQHV	9	Unmodified	_ALHDLLQHV_					0	0	0		ENSG00000171914|ENST00000636159|TLN2;TLN2|p.L2360Pfs*51|1|0.07|ENSG00000171914|chr15:62833577-62833578|-/T|frameshift_variant;TLN2|p.K1007*|1|0.28|ENSG00000171914|chr15:62722378-62722396|CCAAAGCCGCAGTGCCCAC/-|frameshift_variant	ENSG00000171914|ENST00000636159|TLN2	ENSG00000171914|ENST00000636159|TLN2	MULTI-MSMS	OvCa99_classI_Rep5	1	523.2938232421875	2	523.293091	1044.57163	1.7252	0.00090279	1.2876	0.00067378	3.0128	0.0015766	523.2935700228345	85.029	0.61871	85.029	84.716	85.334	0					31	14	3	0	0	0	0.16562	1	8910	8910		82.241	18.033	1	1207100			1333	7248	999	1000	1862	1862					0.05112565054423612
ALHELLGG	8	Unmodified	_ALHELLGG_					0	0	0			REV__ENST00000534656.2_1_11:118868886-118869820:+|nuORF	REV__ENST00000534656.2_1_11:118868886-118869820:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.7454833984375	2	405.229428	808.444303	0.79573	0.00032245	-3.5956	-0.001457	-2.7999	-0.0011346	405.22800640622904	40.383	0.32535	40.383	40.2	40.526	0					9	6	2	0	0	0	0.028476	1	2446	2446		9.4706	0.64823	1	35011	+		1334	22561	1000	1001	1863	1863					0.03241844180240605
ALHIRKDS	8	Unmodified	_ALHIRKDS_					0	0	0			REV__ENSG00000141200|ENST00000268919|KIF2B	REV__ENSG00000141200|ENST00000268919|KIF2B	MULTI-MSMS	OvCa9_classI_Rep3	3	470.27227783203125	2	470.272158	938.529764	-3.0901	-0.0014532	3.1911	0.0015007	0.10101	4.7502E-05	470.2736065998923	146.16	1.8917	145.2	144.4	146.29	-0.95947					80	37	4	0	0	0	0.75661	1	12258	12258		19.36	0.25645	1	264540	+		1335	19720	1001	1002	1864	1864					0.058040093658974
ALHKEKALR	9	Unmodified	_ALHKEKALR_					0	0	0		ENST00000521330.6_1_17:78388994-78402256:+|nuORF	ENST00000521330.6_1_17:78388994-78402256:+|nuORF	ENST00000521330.6_1_17:78388994-78402256:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.3103637695312	2	533.330008	1064.64546	-0.53896	-0.00028745	0.11735	6.2586E-05	-0.42161	-0.00022486	533.3297793240431	29.033	0.29859	29.033	28.888	29.186	0					13	5	3	0	0	0	0.027426	1	1009	1009		66.429	7.6473	1	51317			1336	13119	1002	1003	1865	1865					0.11572533216735792
ALHKRKALQ	9	Unmodified	_ALHKRKALQ_					0	0	0			REV__ENST00000402966.1_1_22:42093436-42094048:+|nuORF	REV__ENST00000402966.1_1_22:42093436-42094048:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	533.8062744140625	2	532.838	1063.66145	-1.3416	-0.00071486	-2.4066	-0.0012823	-3.7482	-0.0019972	532.8364144899351	94.088	1.3092	92.988	92.592	93.901	-1.0995					63	25	3	0	0	0	0.027462	1	8507	8507		24.203	6.8378	1	227410	+		1337	25423	1003	1004	1866	1866					0.13216239453663547
ALHKRSKEP	9	Unmodified	_ALHKRSKEP_					0	0	0			REV__ENST00000582590.1_1_17:26731487-26733159:-|nuORF	REV__ENST00000582590.1_1_17:26731487-26733159:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.7582397460938	2	533.311815	1064.60908	-0.76453	-0.00040773	1.0377	0.00055343	0.27319	0.0001457	533.3119575213856	42.133	0.34788	42.133	41.982	42.329	0					10	7	2	0	0	0	0.027462	1	2695	2695		7.1934	0	1	80189	+		1338	16990	1004	1005	1867	1867					0.07935656320046292
ALHNHYTQK	9	Unmodified	_ALHNHYTQK_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211892|P01861-1|IGHG4;CON__ENSEMBL:ENSBTAP00000024466;CON__ENSEMBL:ENSBTAP00000024462;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4	nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	MULTI-MSMS	OvCa9_classI_Rep2	2	556.28564453125	2	556.285797	1110.55704	1.8039	0.0010035	-1.8361	-0.0010214	-0.032211	-1.7918E-05	556.2846347321127	29.521	0.87109	26.811	26.636	27.508	-2.7097					46	17	3	0	0	0	0.22621	5	720	713;720;726;739;750		71.877	21.811	1	197300			1339	15299;15300	1005	1006	1868;1869;1870;1871;1872	1869					0.006184929062555966
ALHRINTFWD	10	Unmodified	_ALHRINTFWD_					0	0	0			REV__ENSG00000166896|ENST00000300145|ATP23	REV__ENSG00000166896|ENST00000300145|ATP23	MULTI-MSMS	OvCa99_classI_Rep5	1	424.8903503417969	3	424.887645	1271.64111	0.1037	4.4061E-05	2.6226	0.0011143	2.7263	0.0011584	424.8885860973049	51.395	0.58291	51.395	51.164	51.747	0					32	13	4	0	0	0	0.6898	1	3961	3961		31.634	1.0654	1	1074400	+		1340	21233	1006	1007	1873	1873					0.01615024003194776
ALIDLRAQL	9	Unmodified	_ALIDLRAQL_					0	0	0			REV__CON__Q3TTY5	REV__CON__Q3TTY5	MULTI-MSMS	OvCa9_classI_Rep2	2	506.8094177246094	2	506.811116	1011.60768	-1.1259	-0.00057063	0.32757	0.00016601	-0.79835	-0.00040461	506.81130069607957	99.678	3.3722	98.848	98.219	101.59	-0.83051					157	66	4	0	0	0	0.041116	2	9081	9081;9087		125.81	5.193	1	2351400	+	+	1341	16212	1007	1008	1874;1875	1874					0.10234022231293238
ALIDRLALF	9	Unmodified	_ALIDRLALF_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000568642.5_1_16:46706372-46712929:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.3170776367188	2	516.316035	1030.61752	-0.10376	-5.3571E-05	-0.80907	-0.00041774	-0.91283	-0.00047131	516.3154329525169	75.379	1.158	72.148	71.82	72.978	-3.2308					66	23	4	0	0	0	0.40667	1	5938	5938		51.335	3.6781	1	409150			1342	1407	1008	1009	1876	1876					0.10343210236624145
ALIDRLALF	9	Unmodified	_ALIDRLALF_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000568642.5_1_16:46706372-46712929:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MATCH	OvCa9_classI_Rep2	2		2	516.316035	1030.61752	-0.32477	-0.00016768	-0.054199	-2.7984E-05	-0.37897	-0.00019567	516.3158127112531	74.189	1.5134	72.218	71.798	73.312	-1.9711	0.034748	0.00027814	NaN	51.335	75	28	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	319270			1343	1407	1008	1009							0.10343210236624145
ALIDTVIAH	9	Unmodified	_ALIDTVIAH_					0	0	0		ENST00000433480.2_1_13:48876566-48877550:-|nuORF	ENST00000433480.2_1_13:48876566-48877550:-|nuORF	ENST00000433480.2_1_13:48876566-48877550:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.7760925292969	2	476.776742	951.538931	0.96849	0.00046175	1.4915	0.00071112	2.46	0.0011729	476.775973362535	114.18	1.687	112.74	112.38	114.07	-1.4461					111	32	5	0	0	0	0.22913	1	10637	10637		71.378	2.8932	1	820870			1344	11833	1009	1010	1877	1877					0.06122357931553779
ALIEKLVEL	9	Unmodified	_ALIEKLVEL_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;ENST00000532469.1_1_11:65029724-65047127:+|nuORF	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.3218383789062	2	514.323525	1026.6325	-0.3677	-0.00018911	-0.018037	-9.2766E-06	-0.38573	-0.00019839	514.3233925462217	123.57	0.78957	122.2	121.95	122.74	-1.3666					39	15	3	0	0	0	0.3249	1	11714	11714		60.118	5.3419	1	99163			1345	995	1010	1011	1878	1878					0.12024657313986609
ALIGGSAFPRA	11	Unmodified	_ALIGGSAFPRA_					0	0	0		ENST00000489214.5_1_2:85921907-85921952:+|nuORF	ENST00000489214.5_1_2:85921907-85921952:+|nuORF	ENST00000489214.5_1_2:85921907-85921952:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	530.2989501953125	2	530.300916	1058.58728	-0.044695	-2.3702E-05	-4.0298	-0.002137	-4.0745	-0.0021607	530.2986629314781	30.396	1.3311	27.686	27.458	28.789	-2.7097					67	26	4	0	0	0	0.48738	1	831	831		54.776	5.3348	1	398640			1346	12672	1011	1012	1879	1879					0.0603285157146729
ALIHGGIPKK	10	Unmodified	_ALIHGGIPKK_					0	0	0			REV__ENSG00000100206|ENST00000216024|DMC1	REV__ENSG00000100206|ENST00000216024|DMC1	MULTI-MSMS	OvCa9_classI_Rep2	2	517.328369140625	2	517.329476	1032.6444	-0.96898	-0.00050128	0.18183	9.4066E-05	-0.78715	-0.00040722	517.3296389860662	52.976	1.0878	50.162	49.887	50.975	-2.8139					50	21	3	0	0	0	0.64063	1	3581	3581		37.159	3.6435	1	189920	+		1347	17378	1012	1013	1880	1880					0.129383188478414
ALIIPALLEI	10	Unmodified	_ALIIPALLEI_					0	0	0		nc|ENSG00000186334|Q495N2-2|SLC36A3;ENSG00000186334|ENST00000335230|SLC36A3;nc|ENSG00000186334|Q495N2-3|SLC36A3	nc|ENSG00000186334|Q495N2-2|SLC36A3	nc|ENSG00000186334|Q495N2-2|SLC36A3	MULTI-MSMS	OvCa9_classI_Rep2	2	533.3475341796875	2	533.349543	1064.68453	-0.61869	-0.00032998	-2.5495	-0.0013598	-3.1682	-0.0016898	533.348160054999	92.553	1.6565	91.385	91.024	92.68	-1.168					102	31	5	0	0	0	0.74484	1	8292	8292		25.45	0	1	1110800			1348	8330	1013	1014	1881	1881					0.15477820727755898
ALIKDKRSD	9	Unmodified	_ALIKDKRSD_					0	0	0		tr|A0A7D6ZW43|A0A7D6ZW43_9CLOTSeptumsite-determiningproteinMinDOS=ClostridiumintestinaleOX=36845GN=minDPE=3SV=1	tr|A0A7D6ZW43|A0A7D6ZW43_9CLOTSeptumsite-determiningproteinMinDOS=ClostridiumintestinaleOX=36845GN=minDPE=3SV=1	tr|A0A7D6ZW43|A0A7D6ZW43_9CLOTSeptumsite-determiningproteinMinDOS=ClostridiumintestinaleOX=36845GN=minDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	523.302734375	2	523.303655	1044.59276	-0.69596	-0.0003642	0.54848	0.00028702	-0.14748	-7.7179E-05	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.64427	1	13919	13919		26.693	1.1189	1	130240			1349	35824	1014	1015	1882	1882					0.07224530363282611
ALIMTIAPV	9	Unmodified	_ALIMTIAPV_					0	0	0			REV__tr|A0A553SUQ8|A0A553SUQ8_NIACIRiboseABCtransporterpermeaseOS=NialliacirculansOX=1397GN=rbsCPE=4SV=1	REV__tr|A0A553SUQ8|A0A553SUQ8_NIACIRiboseABCtransporterpermeaseOS=NialliacirculansOX=1397GN=rbsCPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	464.7802429199219	2	464.780439	927.546325	2.0172	0.00093755	-3.1883	-0.0014818	-1.1711	-0.00054429	464.7788431718824	134.28	0.93726	134.28	133.63	134.56	0					43	19	3	0	0	0	0.39645	1	15611	15611		52.299	2.2746	1	148990	+		1350	31111	1015	1016	1883	1883					0.07965374207628884
ALIPKLRVEE	10	Unmodified	_ALIPKLRVEE_					0	0	0			REV__LOXL4|p.V443Pfs*13|1|0.36|ENSG00000138131|chr10:98256881-98256882|-/AGTGCACCGG|frameshift_variant	REV__LOXL4|p.V443Pfs*13|1|0.36|ENSG00000138131|chr10:98256881-98256882|-/AGTGCACCGG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3576049804688	2	584.358431	1166.70231	-0.5033	-0.0002941	-2.654	-0.0015509	-3.1573	-0.001845	584.3567763295431	142.42	4.015	140.98	138.81	142.83	-1.4427					242	77	4	0	0	0	0.762	1	13896	13896		23.523	0.94304	1	214670	+		1351	19514	1016	1017	1884	1884					0.12562535982624468
ALIPQGFSCL	10	Unmodified	_ALIPQGFSCL_					0	0	0		ENST00000425159.7_1_17:45567593-45569825:-|nuORF	ENST00000425159.7_1_17:45567593-45569825:-|nuORF	ENST00000425159.7_1_17:45567593-45569825:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2930297851562	2	524.778428	1047.5423	-0.53338	-0.00027991	-4.2316	-0.0022206	-4.765	-0.0025005	524.7758751312658	40.952	0.48614	40.952	40.754	41.24	0					12	10	2	0	0	0	0.026802	1	2502	2502		19.997	9.1312	1	57741			1352	11718	1017	1018	1885	1885					0.020432847139318255
ALISAVSLCI	10	Unmodified	_ALISAVSLCI_					0	0	0			REV__nc|ENSG00000288658|A0A7I2V3R4|RNF228	REV__nc|ENSG00000288658|A0A7I2V3R4|RNF228	MULTI-MSMS	OvCa9_classI_Rep3	3	495.2876281738281	2	495.288628	988.562703	0.072907	3.611E-05	-3.818	-0.001891	-3.7451	-0.0018549	495.28661892712034	110.12	1.7438	108.97	108.66	110.41	-1.1444					79	33	4	0	0	0	0.56767	1	7981	7981		45.952	3.5558	1	451340	+		1353	29208	1018	1019	1886	1886					0.06796455373716981
ALISGIEAQL	10	Unmodified	_ALISGIEAQL_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19	CON__P08727	CON__P08727	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7960205078125	2	507.795132	1013.57571	0.75768	0.00038475	-1.0025	-0.00050907	-0.24483	-0.00012432	507.7945488650609	127.54	1.3823	127.31	127.08	128.47	-0.2359					75	27	4	0	0	0	0.083353	2	12479	12479;12485		117.81	21.266	1	644690		+	1354	625	1019	1020	1887;1888	1887					0.06946609757460465
ALISGIEAQL	10	Unmodified	_ALISGIEAQL_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19	CON__P08727	CON__P08727	MULTI-MSMS	OvCa9_classI_Rep3	3	507.7952575683594	2	507.795132	1013.57571	0.46567	0.00023646	-0.74855	-0.00038011	-0.28288	-0.00014365	507.79468027624847	128.34	1.2845	127.25	126.97	128.26	-1.0933					67	25	4	0	0	0	0.094891	6	10102	10086;10090;10096;10102;10109;10115		114.89	38.048	1	352990		+	1355	625	1019	1020	1889;1890;1891;1892;1893;1894	1892					0.06946609757460465
ALISGIEAQL	10	Unmodified	_ALISGIEAQL_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19	CON__P08727	CON__P08727	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7950134277344	2	507.795132	1013.57571	0.21115	0.00010722	-0.66397	-0.00033716	-0.45283	-0.00022994	507.7947280281232	128.58	1.4414	127.13	126.85	128.29	-1.4565					78	28	4	0	0	0	0.05764	2	12292	12292;12304		126.24	30.427	1	608480		+	1356	625	1019	1020	1895;1896	1895					0.06946609757460465
ALISNSHQL	9	Unmodified	_ALISNSHQL_					0	0	0		ENSG00000178573|ENST00000326043|MAF;nc|ENSG00000178573|O75444|MAF	ENSG00000178573|ENST00000326043|MAF	ENSG00000178573|ENST00000326043|MAF	MULTI-MSMS	OvCa99_classI_Rep5	1	491.7705993652344	2	491.769448	981.524344	-0.23152	-0.00011385	-0.25908	-0.00012741	-0.4906	-0.00024126	491.76927646544004	65.158	1.1088	65.158	64.875	65.984	0					79	27	5	0	0	0	0.0078313	2	5980	5950;5980		180.87	44.601	1	23706000			1357	7763	1020	1021	1897;1898	1898					0.03284285783422547
ALISNSHQL	9	Unmodified	_ALISNSHQL_					0	0	0		ENSG00000178573|ENST00000326043|MAF;nc|ENSG00000178573|O75444|MAF	ENSG00000178573|ENST00000326043|MAF	ENSG00000178573|ENST00000326043|MAF	MULTI-MSMS	OvCa9_classI_Rep2	2	491.7681579589844	2	491.769448	981.524344	-0.32988	-0.00016222	0.18333	9.0158E-05	-0.14655	-7.2067E-05	491.76948339461615	67.661	1.5803	65	64.397	65.977	-2.661					96	31	4	0	0	0	0.035142	4	5301	5291;5301;5308;5322		131.03	35.437	1	811710			1358	7763	1020	1021	1899;1900;1901;1902	1900					0.03284285783422547
ALISNSHQL	9	Unmodified	_ALISNSHQL_					0	0	0		ENSG00000178573|ENST00000326043|MAF;nc|ENSG00000178573|O75444|MAF	ENSG00000178573|ENST00000326043|MAF	ENSG00000178573|ENST00000326043|MAF	MULTI-MSMS	OvCa9_classI_Rep4_	4	491.7701110839844	2	491.769448	981.524344	0.73066	0.00035931	-1.2949	-0.00063677	-0.5642	-0.00027746	491.7687953210719	68.431	1.7149	64.941	64.381	66.096	-3.4902					96	34	4	0	0	0	0.0094524	4	5077	5066;5077;5089;5101		171.38	43.509	1	3327400			1359	7763	1020	1021	1903;1904;1905;1906	1904					0.03284285783422547
ALITLGICCAY	11	Carbamidomethyl (C)	_ALITLGICC(Carbamidomethyl (C))AY_	ALITLGIC(0.147)C(0.853)AY		ALITLGIC(-7.6)C(7.6)AY		0	1	0		nc|ENSG00000166086|Q9BX67-2|JAM3;ENSG00000166086|ENST00000299106|JAM3	nc|ENSG00000166086|Q9BX67-2|JAM3	nc|ENSG00000166086|Q9BX67-2|JAM3	MULTI-MSMS	OvCa9_classI_Rep2	2	599.3038940429688	2	599.303952	1196.59335	-0.77438	-0.00046409	0.85171	0.00051044	0.077334	4.6347E-05	599.3042843627973	114.94	1.1851	114.82	114.6	115.79	-0.11777					44	23	3	0	0	0	0.40225	1	10955	10955		60.972	13.315	2	174640			1360	6635	1021	1022	1907	1907	65				0.002918656964538968
ALITLGICCAY	11	Carbamidomethyl (C)	_ALITLGICC(Carbamidomethyl (C))AY_					0	1	0		nc|ENSG00000166086|Q9BX67-2|JAM3;ENSG00000166086|ENST00000299106|JAM3	nc|ENSG00000166086|Q9BX67-2|JAM3	nc|ENSG00000166086|Q9BX67-2|JAM3	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	599.303952	1196.59335	1.0173	0.00060969	1.1362	0.00068093	2.1535	0.0012906	599.3045242947921	114.98	0.79409	114.98	114.65	115.44	0	0.21079	0.0014515	NaN	60.972	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	828650			1361	6635	1021	1022			65				0.002918656964538968
ALITRIEYSKL	11	Unmodified	_ALITRIEYSKL_					0	0	0			REV__ENST00000545932.5_1_12:108962740-108962866:+|nuORF	REV__ENST00000545932.5_1_12:108962740-108962866:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	436.2615661621094	3	436.262489	1305.76564	1.694	0.00073904	-4.1194	-0.0017972	-2.4254	-0.0010581	436.26077678089143	64.483	2.8395	61.49	61.14	63.98	-2.9933					174	55	5	0	0	0	0.69015	1	2598	2598		33.039	11.259	1	3808000	+		1362	27413	1022	1023	1908	1908					0.12498476699829553
ALITRIFGV	9	Unmodified	_ALITRIFGV_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;THADA|p.R1942Ifs*6|1|0.05|ENSG00000115970|chr2:43230985-43230986|-/CTGGGGGA|frameshift_variant;ENSG00000115970|ENST00000405975|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;ENST00000436947.1_1_2:43711555-43732871:-|nuORF	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	OvCa99_classI_Rep5	1	495.3114929199219	2	495.310752	988.606951	1.0807	0.00053529	0.58452	0.00028952	1.6652	0.00082481	495.31093269430914	123.44	0.64594	123.44	123.18	123.83	0					28	13	3	0	0	0	0.3249	1	14234	14234		60.118	10.094	1	170720			1363	3144	1023	1024	1909	1909					0.11219227582228086
ALIVEEAR	8	Unmodified	_ALIVEEAR_					0	0	0		ENSG00000051341|ENST00000264233|POLQ;nc|ENSG00000051341|O75417-2|POLQ	ENSG00000051341|ENST00000264233|POLQ	ENSG00000051341|ENST00000264233|POLQ	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.22528076171875	2	450.761092	899.507631	0.46164	0.00020809	-0.90663	-0.00040867	-0.44499	-0.00020059	450.76059396527864	98.749	0.87606	96.387	96.038	96.914	-2.3621					21	16	2	0	0	0	0.028476	1	8775	8775		26.796	4.8362	1	34443			1364	1186	1024	1025	1910	1910					0.053857848974644185
ALIVEEAR	8	Unmodified	_ALIVEEAR_					0	0	0		ENSG00000051341|ENST00000264233|POLQ;nc|ENSG00000051341|O75417-2|POLQ	ENSG00000051341|ENST00000264233|POLQ	ENSG00000051341|ENST00000264233|POLQ	MULTI-MATCH	OvCa9_classI_Rep2	2		2	450.761092	899.507631	2.4299	0.0010953	-2.5121	-0.0011323	-0.082179	-3.7043E-05	450.7598078520439	97.366	1.0351	96.407	95.873	96.908	-0.95856	0.01042	-0.00065349	NaN	19.36	28	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24752			1365	1186	1024	1025							0.053857848974644185
ALIVPRTLL	9	Unmodified	_ALIVPRTLL_					0	0	0			REV__nc|ENSG00000113763|Q6ZN44-3|UNC5A	REV__nc|ENSG00000113763|Q6ZN44-3|UNC5A	MULTI-MSMS	OvCa9_classI_Rep3	3	498.33380126953125	2	498.334227	994.653902	-1.4326	-0.00071391	1.262	0.00062888	-0.17064	-8.5035E-05	498.3347342059933	136.81	1.8563	135.72	135.27	137.12	-1.0858					84	37	3	0	0	0	0.38529	1	11147	11147		53.351	2.016	1	104120	+		1366	18170	1025	1026	1911	1911					0.15636087133384535
ALIVVYIPIIL	11	Unmodified	_ALIVVYIPIIL_					0	0	0		tr|A0A7D6ZJ46|A0A7D6ZJ46_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09830PE=4SV=1	tr|A0A7D6ZJ46|A0A7D6ZJ46_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09830PE=4SV=1	tr|A0A7D6ZJ46|A0A7D6ZJ46_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09830PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	409.6079406738281	3	409.608937	1225.80498	1.1396	0.00046679	-3.5153	-0.0014399	-2.3757	-0.00097312	409.6074659919173	107.95	5.8573	106.76	106.27	112.13	-1.1978					409	114	4	0	0	0	0.63561	1	7752	7752		41.427	1.3684	1	1037400			1367	35635	1026	1027	1912	1912					0.20111228721384578
ALIWQSSI	8	Unmodified	_ALIWQSSI_					0	0	0			REV__L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|380|3|anti-sense	REV__L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|380|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	459.25604248046875	2	459.258185	916.501818	-0.11966	-5.4956E-05	-4.1714	-0.0019157	-4.291	-0.0019707	459.2560636516375	57.29	1.0185	53.945	53.527	54.546	-3.3449					65	19	5	0	0	0	0.30448	1	3718	3718		106.42	8.9425	1	457050	+		1368	28565	1027	1028	1913	1913					0.0402268638579244
ALIWQSSI	8	Unmodified	_ALIWQSSI_					0	0	0			REV__L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|380|3|anti-sense	REV__L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|380|3|anti-sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	459.258185	916.501818	-0.33776	-0.00015512	-4.2374	-0.0019461	-4.5752	-0.0021012	459.2560705596194	56.802	1.2881	53.998	53.424	54.712	-2.804	0.026775	-3.2029E-05	NaN	106.42	51	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92123	+		1369	28565	1027	1028							0.0402268638579244
ALIYLLLPV	9	Unmodified	_ALIYLLLPV_					0	0	0			REV__ENSG00000205670|ENST00000399292|SMIM11	REV__ENSG00000205670|ENST00000399292|SMIM11	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.8366394042969	2	507.833529	1013.6525	1.7202	0.0008736	-4.0693	-0.0020665	-2.349	-0.0011929	507.83169445246125	91.288	0.28546	91.288	91.174	91.459	0					8	6	2	0	0	0	0.027462	1	9818	9818		39.021	18.075	1	265520	+		1370	23223	1028	1029	1914	1914					0.14622453044614758
ALKDKIEKA	9	Unmodified	_ALKDKIEKA_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;HSP90B1|p.I687Vfs*9|1|0.07|ENSG00000166598|chr12:103946648-103946649|-/GTGCTCCAGGTACTTGGGACTC|frameshift_variant;ENST00000415545.2_1_1:92108345-92109332:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.3106994628906	2	508.310949	1014.60735	-0.1665	-8.4632E-05	-0.23093	-0.00011739	-0.39743	-0.00020202	508.3107189601986	35.543	0.73577	35.543	35.293	36.029	0					36	15	5	0	0	0	0.1243	1	1800	1800		90.601	0	1	1058500			1371	6697	1029	1030	1915	1915					0.10062602511425212
ALKGINKVMA	10	Unmodified	_ALKGINKVMA_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.C4432Lfs*27|1|0.15|ENSG00000055609|chr7:152148633-152148634|-/AGCCTGTAATCCCAGCTACTCGGGAGGCTGAG|frameshift_variant	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-MSMS	OvCa9_classI_Rep3	3	522.8120727539062	2	522.815344	1043.61614	-5.1563	-0.0026958	-2.2284	-0.001165	-7.3847	-0.0038608	522.8140763744603	152.4	1.0707	151.42	151.09	152.16	-0.97299					54	21	4	0	0	0	0.64063	1	13022	13022		37.159	5.2042	1	172960			1372	1222	1030	1031	1916	1916					0.0960725287625337
ALKGLVLEM	9	Unmodified	_ALKGLVLEM_					0	0	0			REV__ENSG00000141956|ENST00000398548|PRDM15	REV__ENSG00000141956|ENST00000398548|PRDM15	MULTI-MSMS	OvCa99_classI_Rep5	1	487.2907409667969	2	487.291171	972.567789	0.2912	0.0001419	-1.2322	-0.00060045	-0.94102	-0.00045855	487.29018711585417	101.87	1.6129	101.87	101.06	102.68	0					91	37	5	0	0	0	0.36502	1	11350	11350		55.504	0.73953	1	6372700	+		1373	19761	1031	1032	1917	1917					0.08040759236359918
ALKHKYPL	8	Unmodified	_ALKHKYPL_					0	0	0		tr|A0A7D6VP23|A0A7D6VP23_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14975PE=4SV=1	tr|A0A7D6VP23|A0A7D6VP23_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14975PE=4SV=1	tr|A0A7D6VP23|A0A7D6VP23_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14975PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.2648010253906	2	485.297645	968.580737	0.90507	0.00043923	0.94684	0.0004595	1.8519	0.00089873	485.297992458592	81.516	0.40582	81.516	81.288	81.694	0					20	9	3	0	0	0	0.028476	1	8386	8386		20.482	1.1219	1	1082400			1374	34745	1032	1033	1918	1918					0.09518958410740197
ALKKEKLMA	9	Unmodified	_ALKKEKLMA_					0	0	0			REV__ENSG00000181378|ENST00000341552|CFAP65	REV__ENSG00000181378|ENST00000341552|CFAP65	MULTI-MSMS	OvCa9_classI_Rep2	2	516.3135986328125	2	516.31772	1030.62089	-4.2539	-0.0021964	-3.1202	-0.001611	-7.3741	-0.0038074	516.3160035152533	156.4	1.1562	156.18	155.89	157.05	-0.22696					77	28	5	0	0	0	0.69123	1	15932	15932		20.947	3.582	1	397210	+		1375	22229	1033	1034	1919	1919					0.10680137019016911
ALKKKKKM	8	Unmodified	_ALKKKKKM_					0	0	0		ENSG00000105825|ENST00000222543|TFPI2;nc|ENSG00000105825|P48307-2|TFPI2	ENSG00000105825|ENST00000222543|TFPI2	ENSG00000105825|ENST00000222543|TFPI2	MULTI-SECPEP	OvCa9_classI_Rep3	3	487.28228759765625	2	487.830798	973.647042	-0.99501	-0.0004854	3.2973	0.0016085	2.3023	0.0011231	487.8325272164213	97.558	0.2416	95.799	95.672	95.913	-1.7595					6	4	2	0	0	0	0.028476	1	6484	6484		9.4706	1.2393	1	7383.6			1376	2505	1034	1035	1920	1920					0.15916450981160324
ALKKLMHH	8	Unmodified	_ALKKLMHH_					0	0	0			REV__tr|A0A553SIR9|A0A553SIR9_NIACISigma-70familyRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=CEQ21_15315PE=3SV=1	REV__tr|A0A553SIR9|A0A553SIR9_NIACISigma-70familyRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=CEQ21_15315PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	490.277099609375	2	489.289297	976.564041	-1.4777	-0.00072303	-4.2934	-0.0021007	-5.7711	-0.0028237	489.28704361964924	85.631	1.2528	83.411	83.134	84.387	-2.2204					33	24	2	0	0	0	0.028476	1	5080	5080		39.021	12.225	1	53136	+		1377	29921	1035	1036	1921	1921					0.07482134253154982
ALKKRPLDV	9	Unmodified	_ALKKRPLDV_					0	0	0		nc|ENSG00000068024|P56524-2|HDAC4;nc|ENSG00000068024|P56524|HDAC4;ENSG00000068024|ENST00000543185|HDAC4;ENST00000535493.5_1_2:240016681-240219867:-|nuORF;ENST00000493582.5_1_2:240016681-240274403:-|nuORF;ENST00000463007.5_1_2:240011659-240219867:-|nuORF	nc|ENSG00000068024|P56524-2|HDAC4	nc|ENSG00000068024|P56524-2|HDAC4	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3338623046875	2	520.334759	1038.65496	-0.059232	-3.082E-05	-0.65104	-0.00033876	-0.71027	-0.00036958	520.3343753837619	67.127	1.729	64.466	64.099	65.828	-2.661					90	34	4	0	0	0	0.59983	1	5244	5244		31.955	2.8053	1	916860			1378	1384	1036	1037	1922	1922					0.13718301502262875
ALKKVIIMI	9	Unmodified	_ALKKVIIMI_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	OvCa99_classI_Rep5	1	514.8513793945312	2	514.848656	1027.68276	2.7559	0.0014189	-0.51024	-0.0002627	2.2457	0.0011562	514.8481781421129	89.587	0.74486	89.587	89.275	90.02	0					42	17	4	0	0	0	0.31747	1	9570	9570		60.972	16.441	1	1675700			1379	3919	1037	1038	1923	1923					0.17002488438151886
ALKLLTKEP	9	Unmodified	_ALKLLTKEP_					0	0	0		tr|A0A553SQ70|A0A553SQ70_NIACIDEAD/DEAHboxhelicaseOS=NialliacirculansOX=1397GN=CEQ21_20855PE=3SV=1	tr|A0A553SQ70|A0A553SQ70_NIACIDEAD/DEAHboxhelicaseOS=NialliacirculansOX=1397GN=CEQ21_20855PE=3SV=1	tr|A0A553SQ70|A0A553SQ70_NIACIDEAD/DEAHboxhelicaseOS=NialliacirculansOX=1397GN=CEQ21_20855PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.8263244628906	2	506.823692	1011.63283	-1.4112	-0.00071522	1.0616	0.00053802	-0.34963	-0.0001772	506.824074045614	77.467	0.96442	75.114	74.734	75.698	-2.3527					34	18	3	0	0	0	0.027462	1	4052	4052		20.947	3.582	1	95747			1380	34125	1038	1039	1924	1924					0.1274807703384795
ALKMLRNPT	9	Unmodified	_ALKMLRNPT_					0	0	0		SLC5A3|p.A278Gfs*6|1|0.05|ENSG00000198743|chr21:34096029-34096030|-/GGCAGGATCTGGA|frameshift_variant;ENSG00000198743|ENST00000381151|SLC5A3	SLC5A3|p.A278Gfs*6|1|0.05|ENSG00000198743|chr21:34096029-34096030|-/GGCAGGATCTGGA|frameshift_variant	SLC5A3|p.A278Gfs*6|1|0.05|ENSG00000198743|chr21:34096029-34096030|-/GGCAGGATCTGGA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.2623291015625	2	522.305144	1042.59573	-0.10298	-5.3785E-05	-1.4387	-0.00075146	-1.5417	-0.00080524	522.3037835433367	60.501	0.74532	57.071	56.799	57.544	-3.43					19	14	2	0	0	0	0.027462	1	4127	4127		29.15	0	1	42936			1381	8864	1039	1040	1925	1925					0.0761408221644615
ALKNPPINTK	10	Unmodified	_ALKNPPINTK_					0	0	0		ENSG00000162704|ENST00000359856|ARPC5;nc|ENSG00000162704|O15511-2|ARPC5;ENST00000462965.1_1_1:183596669-183602348:-|nuORF;ENST00000602490.1_1_1:183602183-183602348:-|nuORF	ENSG00000162704|ENST00000359856|ARPC5	ENSG00000162704|ENST00000359856|ARPC5	MULTI-MSMS	OvCa9_classI_Rep2	2	548.329345703125	2	548.329673	1094.64479	-0.12096	-6.6329E-05	-0.25476	-0.00013969	-0.37573	-0.00020602	548.3294214278715	46.156	1.5889	43.446	43.048	44.637	-2.7097					78	31	4	0	0	0	0.05764	8	2740	2719;2724;2734;2740;2746;2752;2767;2773		126.24	48.925	1	518670			1382	6217	1040	1041	1926;1927;1928;1929;1930;1931;1932;1933	1929					0.10125693777035849
ALKNPPINTK	10	Unmodified	_ALKNPPINTK_					0	0	0		ENSG00000162704|ENST00000359856|ARPC5;nc|ENSG00000162704|O15511-2|ARPC5;ENST00000462965.1_1_1:183596669-183602348:-|nuORF;ENST00000602490.1_1_1:183602183-183602348:-|nuORF	ENSG00000162704|ENST00000359856|ARPC5	ENSG00000162704|ENST00000359856|ARPC5	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.3306884765625	2	548.329673	1094.64479	-0.69207	-0.00037948	0.15006	8.2283E-05	-0.54201	-0.0002972	548.3297346064472	46.571	2.5585	43.499	42.979	45.537	-3.0724					121	49	5	0	0	0	0.028355	6	2449	2427;2438;2449;2461;2474;2500		138.06	50.366	1	2333100			1383	6217	1040	1041	1934;1935;1936;1937;1938;1939	1936					0.10125693777035849
ALKQEALPL	9	Unmodified	_ALKQEALPL_					0	0	0			REV__nc|ENSG00000176302|Q6PIV2-2|FOXR1	REV__nc|ENSG00000176302|Q6PIV2-2|FOXR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.80670166015625	2	491.800217	981.585882	0.18709	9.2008E-05	-2.5581	-0.0012581	-2.3711	-0.0011661	491.79877151110367	98.63	0.61349	96.251	95.921	96.534	-2.3786					22	11	3	0	0	0	0.027449	1	8759	8759		50.025	0	1	120130	+		1384	21947	1041	1042	1940	1940					0.09435217482700864
ALKQVLTS	8	Unmodified	_ALKQVLTS_					0	0	0			REV__ENSG00000055950|ENST00000318364|MRPL43	REV__ENSG00000055950|ENST00000318364|MRPL43	MULTI-MSMS	OvCa9_classI_Rep2	2	430.265869140625	2	430.26601	858.517468	-2.5548	-0.0010992	2.7336	0.0011762	0.17876	7.6915E-05	430.2670608792861	35.386	1.0933	32.676	32.356	33.449	-2.7097					41	21	3	0	0	0	0.7224	1	1434	1434		38.806	3.6054	1	137510	+		1385	16713	1042	1043	1941	1941					0.08254972902852842
ALKRASPSAI	10	Unmodified	_ALKRASPSAI_					0	0	0			REV__tr|A0A553SMY2|A0A553SMY2_NIACIDihydrolipoyllysine-residuesuccinyltransferasecomponentof2-oxoglutaratedehydrogenasecomplexOS=NialliacirculansOX=1397GN=odhBPE=3SV=1	REV__tr|A0A553SMY2|A0A553SMY2_NIACIDihydrolipoyllysine-residuesuccinyltransferasecomponentof2-oxoglutaratedehydrogenasecomplexOS=NialliacirculansOX=1397GN=odhBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.3081359863281	2	507.308741	1012.60293	-0.91362	-0.00046349	1.0188	0.00051685	0.10519	5.3362E-05	507.30906110170537	47.765	1.1428	45.055	44.737	45.879	-2.7097					43	22	3	0	0	0	0.66721	1	2923	2923		34.173	3.8548	1	157500	+		1386	30381	1043	1044	1942	1942					0.0971313808852301
ALKRLADA	8	Unmodified	_ALKRLADA_					0	0	0		nc|ENSG00000007402|Q9NY47-4|CACNA2D2;ENSG00000007402|ENST00000424201|CACNA2D2;nc|ENSG00000007402|Q9NY47-3|CACNA2D2;nc|ENSG00000007402|Q9NY47|CACNA2D2;nc|ENSG00000007402|Q9NY47-5|CACNA2D2;chr3:50364976-50365075|350|17.85|0.52|5.09|-|ENST00000423994|CACNA2D2,CACNA2D2	nc|ENSG00000007402|Q9NY47-4|CACNA2D2	nc|ENSG00000007402|Q9NY47-4|CACNA2D2	MULTI-MSMS	OvCa9_classI_Rep2	2	429.2640075683594	2	429.263802	856.513051	0.11406	4.896E-05	0.056391	2.4207E-05	0.17045	7.3167E-05	429.26368354663396	40.99	1.0342	38.281	38.044	39.078	-2.7097					44	20	3	0	0	0	0.69415	1	2119	2119		44.531	0	1	147490			1387	487	1044	1045	1943	1943					0.07905508479939272
ALKTGIVAK	9	Unmodified	_ALKTGIVAK_					0	0	0		ENSG00000123144|ENST00000242784|TRIR	ENSG00000123144|ENST00000242784|TRIR	ENSG00000123144|ENST00000242784|TRIR	MULTI-MSMS	OvCa9_classI_Rep2	2	450.7973937988281	2	450.797478	899.580402	2.2538	0.001016	-2.1878	-0.00098626	0.065955	2.9732E-05	450.7963363611971	45.431	1.4462	42.721	42.448	43.894	-2.7097					65	28	4	0	0	0	0.025955	4	2645	2645;2649;2656;2663		139.97	33.555	1	389490			1388	3577	1045	1046	1944;1945;1946;1947	1944					0.12659538690900263
ALKTGIVAK	9	Unmodified	_ALKTGIVAK_					0	0	0		ENSG00000123144|ENST00000242784|TRIR	ENSG00000123144|ENST00000242784|TRIR	ENSG00000123144|ENST00000242784|TRIR	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.7976379394531	2	450.797478	899.580402	-0.31024	-0.00013986	0.048929	2.2057E-05	-0.26131	-0.0001178	450.79747179139	45.66	1.9722	42.621	42.334	44.306	-3.0385					97	37	4	0	0	0	0.049969	4	2347	2337;2347;2359;2385		118.74	12.034	1	1556900			1389	3577	1045	1046	1948;1949;1950;1951	1949					0.12659538690900263
ALKTIDKVI	9	Unmodified	_ALKTIDKVI_					0	0	0			REV__Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|33|1|sense	REV__Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|33|1|sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.7940979003906	2	500.823692	999.632832	-1.3939	-0.00069812	0.5614	0.00028116	-0.83254	-0.00041696	500.8238450259214	85.46	1.0011	83.239	82.986	83.987	-2.2204					34	19	2	0	0	0	0.027462	1	5095	5095		39.253	5.7372	1	83868	+		1390	15814	1046	1047	1952	1952					0.13300077033841262
ALKTIDKVI	9	Unmodified	_ALKTIDKVI_					0	0	0			REV__Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|33|1|sense	REV__Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|33|1|sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	500.823692	999.632832	-2.1975	-0.0011006	-1.1099	-0.00055587	-3.3074	-0.0016564	500.823243129904	85.104	0.3454	83.558	83.4	83.745	-1.5462	0.22877	-0.00094519	NaN	31.53	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6000	+		1391	15814	1046	1047							0.13300077033841262
ALKTIDKVI	9	Unmodified	_ALKTIDKVI_					0	0	0			REV__Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|33|1|sense	REV__Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|33|1|sense	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	500.823692	999.632832	0.92668	0.0004641	-1.7636	-0.00088328	-0.83697	-0.00041917	500.8228827777769	85.837	0.74693	83.191	82.896	83.643	-2.6463	-0.13861	-0.0016	NaN	31.53	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60029	+		1392	15814	1046	1047							0.13300077033841262
ALKVCVDIP	9	Unmodified	_ALKVCVDIP_					0	0	0		nc|ENSG00000105643|Q8TBH0-2|ARRDC2;ENSG00000105643|ENST00000222250|ARRDC2	nc|ENSG00000105643|Q8TBH0-2|ARRDC2	nc|ENSG00000105643|Q8TBH0-2|ARRDC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.77618408203125	2	479.275521	956.536489	-0.043162	-2.0686E-05	0.17792	8.527E-05	0.13475	6.4584E-05	479.27574590359	74.828	0.34093	71.597	71.337	71.678	-3.2308					14	6	3	0	0	0	0.027232	1	5870	5870		87.754	10.908	1	195550			1393	2480	1047	1048	1953	1953					0.05648186202256511
ALKVKGKTQ	9	Unmodified	_ALKVKGKTQ_					0	0	0			REV__nc|ENSG00000143870|Q15084-3|PDIA6	REV__nc|ENSG00000143870|Q15084-3|PDIA6	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.8139343261719	2	486.813659	971.612765	0.0092768	4.5161E-06	-0.57834	-0.00028154	-0.56906	-0.00027703	486.81330722283235	57.818	1.9114	54.473	54.138	56.049	-3.3449					99	37	4	0	0	0	0.21231	1	3799	3799		74.255	2.9593	1	1449700	+		1394	19873	1048	1049	1954	1954					0.12582326093911433
ALLAEKTH	8	Unmodified	_ALLAEKTH_					0	0	0			REV__nc|ENSG00000161558|Q96AN5-2|TMEM143	REV__nc|ENSG00000161558|Q96AN5-2|TMEM143	MULTI-MSMS	OvCa99_classI_Rep5	1	441.7608947753906	2	441.75581	881.497067	0.57368	0.00025343	1.0309	0.00045539	1.6046	0.00070882	441.7561604746489	59.126	0.33093	59.126	59.046	59.377	0					13	8	2	0	0	0	0.61436	1	5065	5065		60.972	0	1	1868300	+		1395	20700	1049	1050	1955	1955					0.05157802243047627
ALLAGNLRI	9	Unmodified	_ALLAGNLRI_					0	0	0		nc|ENSG00000143554|Q5K4L6-2|SLC27A3;ENSG00000143554|ENST00000624995|SLC27A3;ENST00000368660.1_1_1:153751554-153752475:+|nuORF;ENST00000483574.6_1_1:153751589-153752475:+|nuORF	nc|ENSG00000143554|Q5K4L6-2|SLC27A3	nc|ENSG00000143554|Q5K4L6-2|SLC27A3	MULTI-MSMS	OvCa99_classI_Rep5	1	470.8022155761719	2	470.800552	939.58655	-1.094	-0.00051503	-0.039237	-1.8473E-05	-1.1332	-0.00053351	470.8003919895366	104.47	0.50675	104.47	104.24	104.74	0					26	11	3	0	0	0	0.064607	1	11708	11708		110.34	21.694	1	1137900			1396	5072	1050	1051	1956	1956					0.11434056922405489
ALLALARPL	9	Unmodified	_ALLALARPL_					0	0	0			REV__ENST00000452519.5_2_22:38147480-38150984:+|nuORF	REV__ENST00000452519.5_2_22:38147480-38150984:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	468.76239013671875	2	469.313295	936.612037	0.52646	0.00024708	3.1218	0.0014651	3.6482	0.0017122	469.3147808066525	57.216	0.56018	53.871	53.577	54.138	-3.3449					13	10	2	0	0	0	0.027462	1	3711	3711		18.324	10.093	1	18729	+		1397	25984	1051	1052	1957	1957					0.14119531444839595
ALLDDTILV	9	Unmodified	_ALLDDTILV_					0	0	0			REV__tr|A0A553SKE5|A0A553SKE5_NIACIAdeninephosphoribosyltransferaseOS=NialliacirculansOX=1397GN=aptPE=3SV=1	REV__tr|A0A553SKE5|A0A553SKE5_NIACIAdeninephosphoribosyltransferaseOS=NialliacirculansOX=1397GN=aptPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.78594970703125	2	486.784233	971.553913	-0.0090994	-4.4294E-06	0.32166	0.00015658	0.31256	0.00015215	486.78425321749165	74.933	0.67478	71.702	71.483	72.157	-3.2308					25	13	2	0	0	0	0.098892	1	5896	5896		97.473	17.533	1	636500	+		1398	30117	1052	1053	1958	1958					0.06699805008906878
ALLDGRVQL	9	Unmodified	_ALLDGRVQL_					0	0	0		ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468|AGRN;nc|ENSG00000188157|O00468-2|AGRN	ENSG00000188157|ENST00000379370|AGRN	ENSG00000188157|ENST00000379370|AGRN	MULTI-MSMS	OvCa99_classI_Rep5	1	492.7970275878906	2	492.795466	983.57638	0.042997	2.1189E-05	1.8669	0.00092002	1.9099	0.0009412	492.79624682350664	101.84	0.64563	101.84	101.61	102.25	0					29	14	3	0	0	0	0.10502	2	11345	11336;11345		95.815	13.51	1	958710			1399	8454	1053	1054	1959;1960	1960					0.08393449197183145
ALLDGSNVVFK	11	Unmodified	_ALLDGSNVVFK_					0	0	0		ENST00000395134.3_1_6:33257633-33258228:+|nuORF;ENSG00000204220|ENST00000374606|PFDN6;ENST00000491382.1_1_6:33257633-33258228:+|nuORF	ENST00000395134.3_1_6:33257633-33258228:+|nuORF	ENST00000395134.3_1_6:33257633-33258228:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	581.827392578125	2	581.826963	1161.63937	-0.98712	-0.00057433	0.48653	0.00028308	-0.50059	-0.00029126	581.8271842348869	103.86	1.2881	103.28	102.93	104.22	-0.57639					71	25	4	0	0	0	0.1379	1	9613	9613		89.029	20.183	1	365650			1400	8958	1054	1055	1961	1961					0.06501970194563
ALLDGSNVVFK	11	Unmodified	_ALLDGSNVVFK_					0	0	0		ENST00000395134.3_1_6:33257633-33258228:+|nuORF;ENSG00000204220|ENST00000374606|PFDN6;ENST00000491382.1_1_6:33257633-33258228:+|nuORF	ENST00000395134.3_1_6:33257633-33258228:+|nuORF	ENST00000395134.3_1_6:33257633-33258228:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	581.8275146484375	2	581.826963	1161.63937	-0.89222	-0.00051912	0.37673	0.00021919	-0.51549	-0.00029993	581.8270944942138	105.16	1.2058	103.15	102.85	104.05	-2.0161					77	23	5	0	0	0	0.090942	1	9539	9539		99.013	29.385	1	417520			1401	8958	1054	1055	1962	1962					0.06501970194563
ALLDGSNVVFK	11	Unmodified	_ALLDGSNVVFK_					0	0	0		ENST00000395134.3_1_6:33257633-33258228:+|nuORF;ENSG00000204220|ENST00000374606|PFDN6;ENST00000491382.1_1_6:33257633-33258228:+|nuORF	ENST00000395134.3_1_6:33257633-33258228:+|nuORF	ENST00000395134.3_1_6:33257633-33258228:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	581.826963	1161.63937	-0.75491	-0.00043923	0.30703	0.00017864	-0.44788	-0.00026059	581.8271094118484	104.53	1.4035	103.1	102.76	104.16	-1.4347	-0.07925	-9.4247E-05	NaN	99.013	73	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	471160			1402	8958	1054	1055							0.06501970194563
ALLDIIRSL	9	Unmodified	_ALLDIIRSL_					0	0	0		ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2	ENSG00000134824|ENST00000278840|FADS2	ENSG00000134824|ENST00000278840|FADS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.79925537109375	2	507.321317	1012.62808	0.81917	0.00041558	0.89127	0.00045216	1.7104	0.00086774	507.3219091054695	151.56	0.43634	151.56	151.35	151.79	0					13	8	2	0	0	0	0.027438	1	17751	17751		56.434	10.462	1	54136			1403	4334	1055	1056	1963	1963					0.12227192891100458
ALLDKLYAL	9	Unmodified	_ALLDKLYAL_					0	0	0		ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	MULTI-MSMS	OvCa99_classI_Rep5	1	510.3114929199219	2	510.310418	1018.60628	1.8241	0.00093087	-0.51309	-0.00026183	1.311	0.00066903	510.31010451977795	126.47	1.1933	126.47	125.99	127.18	0					80	25	5	0	0	0	0.064985	2	14606	14606;14653		110.12	0	1	4471500			1404	7723	1056	1057	1964;1965	1964					0.09772388142516775
ALLDKLYAL	9	Unmodified	_ALLDKLYAL_					0	0	0		ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	MULTI-MSMS	OvCa9_classI_Rep2	2	510.30963134765625	2	510.310418	1018.60628	0.72188	0.00036838	-1.0996	-0.00056114	-0.37773	-0.00019276	510.3097721938746	126.6	2.2195	126.37	126.05	128.27	-0.2359					111	44	5	0	0	0	0.025955	8	12352	12352;12358;12365;12371;12377;12389;12395;12408		139.97	17.605	1	879330			1405	7723	1056	1057	1966;1967;1968;1969;1970;1971;1972;1973	1966					0.09772388142516775
ALLDKLYAL	9	Unmodified	_ALLDKLYAL_					0	0	0		ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	MULTI-MSMS	OvCa9_classI_Rep3	3	510.3094482421875	2	510.310418	1018.60628	0.95439	0.00048704	-1.1564	-0.00059014	-0.20204	-0.00010311	510.3097290146053	127.58	1.4149	126.49	126.15	127.57	-1.0933					79	27	4	0	0	0	0.03923	7	10002	9991;9996;10002;10026;10032;10039;10046		127.46	34.318	1	805790			1406	7723	1056	1057	1974;1975;1976;1977;1978;1979;1980	1976					0.09772388142516775
ALLDKLYAL	9	Unmodified	_ALLDKLYAL_					0	0	0		ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.31005859375	2	510.310418	1018.60628	-0.60085	-0.00030662	-0.011383	-5.809E-06	-0.61223	-0.00031243	510.31033129324646	127.85	1.922	126.42	126.09	128.01	-1.4357					108	37	5	0	0	0	0.094616	4	12215	12215;12240;12252;12276		98.629	11.228	1	1190100			1407	7723	1056	1057	1981;1982;1983;1984	1981					0.09772388142516775
ALLDKPPFL	9	Unmodified	_ALLDKPPFL_					0	0	0		ENST00000284384.6_1_17:64637544-64770230:+|nuORF;ENSG00000154229|ENST00000413366|PRKCA	ENST00000284384.6_1_17:64637544-64770230:+|nuORF	ENST00000284384.6_1_17:64637544-64770230:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.76190185546875	2	507.305136	1012.59572	-0.17786	-9.0228E-05	0.2468	0.0001252	0.06894	3.4974E-05	507.30536014624386	122.27	0.55396	120.9	120.65	121.21	-1.3666					16	10	2	0	0	0	0.027462	1	11527	11527		23.042	11.531	1	11433			1408	5720	1057	1058	1985	1985					0.08992405488095301
ALLDRIVSV	9	Unmodified	_ALLDRIVSV_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OvCa99_classI_Rep5	1	493.3060607910156	2	493.305667	984.596781	2.2722	0.0011209	0.24902	0.00012284	2.5212	0.0012437	493.30574942747205	113.33	0.4275	113.33	113.11	113.53	0					20	10	2	0	0	0	0.17606	1	12912	12912		80.455	10.827	1	383130			1409	5790	1058	1059	1986	1986					0.10386619857001733
ALLDRIVSV	9	Unmodified	_ALLDRIVSV_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OvCa9_classI_Rep2	2	493.3052978515625	2	493.305667	984.596781	0.47386	0.00023376	-0.28166	-0.00013895	0.19219	9.481E-05	493.30541764477005	114.35	1.2334	114.23	113.96	115.19	-0.11777					61	24	4	0	0	0	0.22035	2	10876	10870;10876		72.879	9.3337	1	230960			1410	5790	1058	1059	1987;1988	1988					0.10386619857001733
ALLDRIVSV	9	Unmodified	_ALLDRIVSV_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OvCa9_classI_Rep3	3	493.3053894042969	2	493.305667	984.596781	-0.53214	-0.00026251	0.12534	6.183E-05	-0.4068	-0.00020068	493.3056649294853	115.19	1.6282	114.14	113.7	115.33	-1.055					74	32	4	0	0	0	0.3249	1	8538	8538		60.118	5.3419	1	209660			1411	5790	1058	1059	1989	1989					0.10386619857001733
ALLDRIVSV	9	Unmodified	_ALLDRIVSV_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.30487060546875	2	493.305667	984.596781	0.48598	0.00023974	-0.79566	-0.0003925	-0.30968	-0.00015277	493.30516268830286	115.52	1.1876	114.13	113.72	114.91	-1.3977					53	23	4	0	0	0	0.16264	2	10755	10755;10776		82.75	13.123	1	245190			1412	5790	1058	1059	1990;1991	1990					0.10386619857001733
ALLDSAHLL	9	Unmodified	_ALLDSAHLL_					0	0	0		nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1	nc|ENSG00000065000|O14617-4|AP3D1	nc|ENSG00000065000|O14617-4|AP3D1	MULTI-MSMS	OvCa99_classI_Rep5	1	476.77734375	2	476.776742	951.538931	1.6287	0.00077654	0.1232	5.8738E-05	1.7519	0.00083527	476.77666564363966	112.14	0.68955	112.14	111.83	112.52	0					36	14	3	0	0	0	0.048552	2	12772	12751;12772		119.56	39.618	1	909170			1413	1312	1059	1060	1992;1993	1993					0.06122357931565148
ALLDSAHLL	9	Unmodified	_ALLDSAHLL_					0	0	0		nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1	nc|ENSG00000065000|O14617-4|AP3D1	nc|ENSG00000065000|O14617-4|AP3D1	MULTI-MSMS	OvCa9_classI_Rep2	2	476.7766418457031	2	476.776742	951.538931	0.48207	0.00022984	2.7493	0.0013108	3.2314	0.0015406	476.776256085318	113.03	1.6288	112.91	112.52	114.15	-0.12174					105	32	5	0	0	0	0.071436	4	10719	10714;10719;10725;10731		106.42	34.166	1	498690			1414	1312	1059	1060	1994;1995;1996;1997	1995					0.06122357931565148
ALLDSAHLL	9	Unmodified	_ALLDSAHLL_					0	0	0		nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1	nc|ENSG00000065000|O14617-4|AP3D1	nc|ENSG00000065000|O14617-4|AP3D1	MULTI-MSMS	OvCa9_classI_Rep3	3	476.7765808105469	2	476.776742	951.538931	1.2649	0.00060308	1.5738	0.00075035	2.8387	0.0013534	476.7758510903552	113.82	1.6266	112.75	112.3	113.93	-1.0726					103	31	5	0	0	0	0.079296	6	8376	8376;8381;8387;8393;8399;8407		102.77	28.203	1	578600			1415	1312	1059	1060	1998;1999;2000;2001;2002;2003	1998					0.06122357931565148
ALLDSAHLL	9	Unmodified	_ALLDSAHLL_					0	0	0		nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1	nc|ENSG00000065000|O14617-4|AP3D1	nc|ENSG00000065000|O14617-4|AP3D1	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.7765808105469	2	476.776742	951.538931	0.96849	0.00046175	1.4915	0.00071112	2.46	0.0011729	476.775973362535	114.18	1.687	112.74	112.38	114.07	-1.4461					111	32	5	0	0	0	0.048552	3	10599	10599;10610;10622		119.56	39.618	1	820870			1416	1312	1059	1060	2004;2005;2006	2004					0.06122357931565148
ALLEKPRAL	9	Unmodified	_ALLEKPRAL_					0	0	0		ENST00000262662.5_1_1:51435291-51435357:+|nuORF	ENST00000262662.5_1_1:51435291-51435357:+|nuORF	ENST00000262662.5_1_1:51435291-51435357:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	505.821044921875	2	505.821484	1009.62842	-1.3674	-0.00069167	0.91332	0.00046198	-0.45411	-0.0002297	505.8218949665062	102.55	1.5294	101.86	101.59	103.12	-0.68459					74	30	4	0	0	0	0.38529	1	9437	9437		53.351	0.26249	1	446420			1417	9899	1060	1061	2007	2007					0.1239861261092301
ALLELLHEL	9	Unmodified	_ALLELLHEL_					0	0	0		ENSG00000161904|ENST00000293760|LEMD2;ENST00000514636.1_1_6:33747875-33752267:-|nuORF	ENSG00000161904|ENST00000293760|LEMD2	ENSG00000161904|ENST00000293760|LEMD2	MULTI-MSMS	OvCa99_classI_Rep5	1	525.8140258789062	2	525.813325	1049.6121	0.62216	0.00032714	1.4078	0.00074024	2.03	0.0010674	525.8138767632823	142.21	0.85019	142.21	141.88	142.73	0					30	16	3	0	0	0	0.50149	1	16613	16613		42.396	8.8806	1	113230			1418	6141	1061	1062	2008	2008					0.08927486654192762
ALLENMHI	8	Unmodified	_ALLENMHI_					0	0	0		nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7;nc|ENSG00000111912|Q8NI08-5|NCOA7	nc|ENSG00000111912|Q8NI08-7|NCOA7	nc|ENSG00000111912|Q8NI08-7|NCOA7	MULTI-MSMS	OvCa99_classI_Rep5	1	470.75189208984375	2	470.74967	939.484787	-0.88065	-0.00041456	4.007	0.0018863	3.1263	0.0014717	470.75146014176806	36.815	1.0029	36.815	36.618	37.621	0					42	21	3	0	0	0	0.67745	1	1986	1986		47.916	12.297	1	1649700			1419	2867	1062	1063	2009	2009					0.012624425083458846
ALLEQNARV	9	Unmodified	_ALLEQNARV_					0	0	0			REV__ENSG00000145217|ENST00000398516|SLC26A1	REV__ENSG00000145217|ENST00000398516|SLC26A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.7522888183594	2	507.290548	1012.56654	-0.02177	-1.1044E-05	0.37991	0.00019272	0.35814	0.00018168	507.29089402566325	69.041	0.74182	69.041	68.606	69.347	0					23	17	2	0	0	0	0.027462	1	6532	6532		37.159	12.956	1	314190	+		1420	19955	1063	1064	2010	2010					0.060762611917994036
ALLFSYSHLL	10	Unmodified	_ALLFSYSHLL_					0	0	0		HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|84|3|sense	HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|84|3|sense	HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|84|3|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	582.3287353515625	2	582.326599	1162.63865	0.70749	0.00041199	-3.8073	-0.0022171	-3.0998	-0.0018051	582.3250399383704	139.27	1.1851	139.27	138.59	139.78	0					51	24	3	0	0	0	0.64063	1	16260	16260		37.159	2.0071	1	65662			1421	14440	1064	1065	2011	2011					0.06383175545511222
ALLFTCTVL	9	Unmodified	_ALLFTCTVL_					0	0	0			REV__ENSG00000119737|ENST00000394705|GPR75	REV__ENSG00000119737|ENST00000394705|GPR75	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.7304382324219	2	490.777896	979.54124	-0.7189	-0.00035282	4.2503	0.0020859	3.5314	0.0017331	490.7798910164218	45.725	1.0977	42.686	42.386	43.484	-3.0385					29	20	2	0	0	0	0.027417	1	2331	2331		65.803	5.5092	1	86777	+		1422	18466	1065	1066	2012	2012					0.050650703450060064
ALLFTCTVL	9	Unmodified	_ALLFTCTVL_					0	0	0			REV__ENSG00000119737|ENST00000394705|GPR75	REV__ENSG00000119737|ENST00000394705|GPR75	MULTI-MATCH	OvCa9_classI_Rep2	2		2	490.777896	979.54124	0.39445	0.00019359	3.5564	0.0017454	3.9509	0.001939	490.7794337118588	45.509	0.70314	42.799	42.547	43.25	-2.7097	0.056682	-0.00054264	NaN	65.803	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16825	+		1423	18466	1065	1066							0.050650703450060064
ALLFVAAIPP	10	Unmodified	_ALLFVAAIPP_					0	0	0			REV__nc|ENSG00000100170|P13866-2|SLC5A1	REV__nc|ENSG00000100170|P13866-2|SLC5A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.8366394042969	2	506.315503	1010.61645	1.648	0.00083443	-3.7833	-0.0019155	-2.1353	-0.0010811	506.31376387635044	91.278	0.56725	91.278	91.057	91.625	0					29	13	3	0	0	0	0.026672	1	9818	9818		54.765	14.192	1	1396800	+		1424	17376	1066	1067	2013	2013					0.11156995867736441
ALLGDLTKA	9	Unmodified	_ALLGDLTKA_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;nc|ENSG00000083312|Q92973-3|TNPO1;ENST00000423641.1_1_10:86150999-86151317:+|nuORF	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	OvCa99_classI_Rep5	1	451.2726135253906	2	451.271293	900.528032	2.0952	0.00094549	0.20776	9.3755E-05	2.3029	0.0010392	451.27127971261564	90.586	0.83112	90.586	90.382	91.213	0					33	20	2	0	0	0	0.094616	1	9728	9728		98.629	5.4339	1	1211300			1425	2471	1067	1068	2014	2014					0.07378955557271638
ALLGILQHV	9	Unmodified	_ALLGILQHV_					0	0	0		ENSG00000015676|ENST00000355451|NUDCD3;ENST00000464812.1_1_7:44525191-44530199:-|nuORF	ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	MULTI-MSMS	OvCa99_classI_Rep5	1	482.3037109375	2	482.302927	962.591301	2.3264	0.0011221	-0.46547	-0.0002245	1.861	0.00089755	482.302561598733	120.76	0.69343	120.76	120.52	121.21	0					25	15	2	0	0	0	0.064607	2	13874	13874;13899		110.34	32.393	1	958390			1426	1006	1068	1069	2015;2016	2015					0.10850941065177722
ALLGILQHV	9	Unmodified	_ALLGILQHV_					0	0	0		ENSG00000015676|ENST00000355451|NUDCD3;ENST00000464812.1_1_7:44525191-44530199:-|nuORF	ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	MULTI-MSMS	OvCa9_classI_Rep2	2	482.3030090332031	2	482.302927	962.591301	-1.1778	-0.00056808	1.1132	0.00053688	-0.064687	-3.1199E-05	482.303313877126	120.92	1.0858	120.73	120.41	121.49	-0.19718					49	21	3	0	0	0	0.064607	4	11670	11664;11670;11676;11682		110.34	43.908	1	108660			1427	1006	1068	1069	2017;2018;2019;2020	2018					0.10850941065177722
ALLGILQHV	9	Unmodified	_ALLGILQHV_					0	0	0		ENSG00000015676|ENST00000355451|NUDCD3;ENST00000464812.1_1_7:44525191-44530199:-|nuORF	ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	MULTI-MSMS	OvCa9_classI_Rep3	3	482.30218505859375	2	482.302927	962.591301	1.3057	0.00062975	-1.3025	-0.00062821	0.003203	1.5448E-06	482.3021540991567	121.95	1.4679	120.92	120.53	122	-1.0286					59	27	3	0	0	0	0.085069	6	9355	9349;9355;9359;9365;9372;9379		101.21	44.112	1	162760			1428	1006	1068	1069	2021;2022;2023;2024;2025;2026	2022					0.10850941065177722
ALLGILQHV	9	Unmodified	_ALLGILQHV_					0	0	0		ENSG00000015676|ENST00000355451|NUDCD3;ENST00000464812.1_1_7:44525191-44530199:-|nuORF	ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.3018798828125	2	482.302927	962.591301	0.070308	3.391E-05	-0.042358	-2.0429E-05	0.027951	1.3481E-05	482.3027829352971	122.34	1.4499	120.97	120.6	122.05	-1.3666					59	28	3	0	0	0	0.098892	3	11550	11538;11550;11576		97.473	42.708	1	153370			1429	1006	1068	1069	2027;2028;2029	2028					0.10850941065177722
ALLGLSISIV	10	Unmodified	_ALLGLSISIV_					0	0	0		tr|A0A7D6W3S6|A0A7D6W3S6_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11045PE=3SV=1	tr|A0A7D6W3S6|A0A7D6W3S6_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11045PE=3SV=1	tr|A0A7D6W3S6|A0A7D6W3S6_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11045PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3045349121094	2	493.318243	984.621933	-0.53446	-0.00026366	-1.2362	-0.00060985	-1.7707	-0.00087351	493.317078481976	115.34	0.24695	114.28	114.1	114.34	-1.0512					5	4	2	0	0	0	0.027513	1	8558	8558		68.787	0	1	5423.9			1430	35459	1069	1070	2030	2030					0.12900674659556444
ALLGSHWPF	9	Unmodified	_ALLGSHWPF_					0	0	0			REV__ENST00000503823.5_2_4:20255137-20255392:+|nuORF	REV__ENST00000503823.5_2_4:20255137-20255392:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.3218994140625	2	514.271627	1026.5287	-0.52352	-0.00026923	0.77936	0.0004008	0.25584	0.00013157	514.7724371625908	123.8	0.19754	122.41	122.32	122.52	-1.3908					5	3	2	0	0	0	0.027462	1	11728	11728		35.201	0	1	12959	+		1431	26851	1070	1071	2031	2031					0.01649794996978926
ALLGVPLSL	9	Unmodified	_ALLGVPLSL_					0	0	0			REV__ENST00000533905.1_3_11:57425299-57426904:+|nuORF	REV__ENST00000533905.1_3_11:57425299-57426904:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	441.7890625	2	441.786579	881.558604	0.54173	0.00023933	2.3389	0.0010333	2.8806	0.0012726	441.78740694443155	61.545	0.71274	61.545	61.071	61.784	0					57	16	4	0	0	0	0.59983	1	5393	5393		31.955	6.5047	1	2780300	+		1432	27115	1071	1072	2032	2032					0.11308733942325944
ALLGVRGVGK	10	Unmodified	_ALLGVRGVGK_					0	0	0		ENST00000397640.5_1_17:73975334-73975502:+|nuORF	ENST00000397640.5_1_17:73975334-73975502:+|nuORF	ENST00000397640.5_1_17:73975334-73975502:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.3147888183594	2	485.313826	968.613099	-0.15198	-7.3759E-05	0.17666	8.5733E-05	0.024672	1.1974E-05	485.31380783470445	65.158	1.2591	61.673	61.358	62.617	-3.4854					62	25	4	0	0	0	0.20801	1	4677	4677		93.195	8.2799	1	648390			1433	11349	1072	1073	2033	2033					0.12753745813768091
ALLGVRGVGK	10	Unmodified	_ALLGVRGVGK_					0	0	0		ENST00000397640.5_1_17:73975334-73975502:+|nuORF	ENST00000397640.5_1_17:73975334-73975502:+|nuORF	ENST00000397640.5_1_17:73975334-73975502:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	485.313826	968.613099	-0.3129	-0.00015185	0.2656	0.0001289	-0.047298	-2.2954E-05	485.31382421211566	64.353	1.4133	61.628	61.128	62.541	-2.7245	-0.022552	4.9609E-05	NaN	93.195	65	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	350260			1434	11349	1072	1073							0.12753745813768091
ALLHKHIN	8	Unmodified	_ALLHKHIN_					0	0	0		nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ARL8B-ITPR1|4|fusion;ARL8B-ITPR1|5|fusion;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1	nc|ENSG00000150995|Q14643-7|ITPR1	nc|ENSG00000150995|Q14643-7|ITPR1	MULTI-MSMS	OvCa9_classI_Rep2	2	473.28411865234375	2	473.285069	944.555585	1.5808	0.00074819	-3.4276	-0.0016222	-1.8468	-0.00087405	473.283312291307	87.947	1.6214	86.516	85.99	87.611	-1.4311					81	32	4	0	0	0	0.64377	1	7717	7717		54.765	1.4132	1	353920			1435	5526	1073	1074	2034	2034					0.08108903608172113
ALLHRPKGPTR	11	Unmodified	_ALLHRPKGPTR_					0	0	0			REV__ENST00000589217.1_1_17:76103713-76105382:-|nuORF	REV__ENST00000589217.1_1_17:76103713-76105382:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	415.92236328125	3	415.922801	1244.74657	0.29666	0.00012339	-0.35819	-0.00014898	-0.061532	-2.5593E-05	415.9225975746678	40.596	0.76266	40.596	40.432	41.195	0					35	16	4	0	0	0	0.70848	1	2479	2479		26.75	3.227	1	866190	+		1436	27904	1074	1075	2035	2035					0.13398984919444956
ALLIGSEIAQ	10	Unmodified	_ALLIGSEIAQ_					0	0	0			REV__ENSG00000171944|ENST00000307388|OR52A5	REV__ENSG00000171944|ENST00000307388|OR52A5	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7955322265625	2	507.795132	1013.57571	0.75768	0.00038475	-1.0025	-0.00050907	-0.24483	-0.00012432	507.7945488650609	127.54	1.3823	127.31	127.08	128.47	-0.2359					75	27	4	0	0	0	0.50999	1	12493	12493		52.937	1.6012	1	644690	+		1437	21662	1075	1076	2036	2036					0.06946609757471833
ALLKARNAS	9	Unmodified	_ALLKARNAS_					0	0	0			REV__nc|ENSG00000149480|O94776-2|MTA2	REV__nc|ENSG00000149480|O94776-2|MTA2	MULTI-MSMS	OvCa9_classI_Rep3	3	472.2874755859375	2	472.287808	942.561064	-4.0924	-0.0019328	4.1769	0.0019727	0.084517	3.9916E-05	472.28971542959135	151.08	2.3118	150.13	149.45	151.76	-0.95645					105	45	4	0	0	0	0.67509	1	12890	12890		23.042	1.0826	1	815680	+		1438	20164	1076	1077	2037	2037					0.08748582399982752
ALLKAVENAK	10	Unmodified	_ALLKAVENAK_					0	0	0		tr|A0A7D6ZZ84|A0A7D6ZZ84_9CLOT2,3-bisphosphoglycerate-independentphosphoglyceratemutaseOS=ClostridiumintestinaleOX=36845GN=gpmIPE=3SV=1	tr|A0A7D6ZZ84|A0A7D6ZZ84_9CLOT2,3-bisphosphoglycerate-independentphosphoglyceratemutaseOS=ClostridiumintestinaleOX=36845GN=gpmIPE=3SV=1	tr|A0A7D6ZZ84|A0A7D6ZZ84_9CLOT2,3-bisphosphoglycerate-independentphosphoglyceratemutaseOS=ClostridiumintestinaleOX=36845GN=gpmIPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.8187866210938	2	528.824224	1055.63389	0.68258	0.00036097	1.0811	0.00057169	1.7636	0.00093265	528.8253149483529	67.025	1.1607	64.137	63.628	64.789	-2.8873					31	22	2	0	0	0	0.026891	1	2744	2744		31.53	3.6476	1	35084			1439	35949	1077	1078	2038	2038					0.10830291402749026
ALLKEIFVSTG	11	Unmodified	_ALLKEIFVSTG_					0	0	0		ENST00000339142.6_2_17:77020254-77040169:+|nuORF	ENST00000339142.6_2_17:77020254-77040169:+|nuORF	ENST00000339142.6_2_17:77020254-77040169:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3419799804688	2	589.344989	1176.67542	-2.1868	-0.0012888	-1.3084	-0.00077111	-3.4952	-0.0020599	589.3441619466173	148.26	4.549	146.82	145.53	150.08	-1.435					304	95	6	0	0	0	0.71498	1	14649	14649		24.519	0.99649	1	385010			1440	10545	1078	1079	2039	2039					0.09415427371413898
ALLKNKPLI	9	Unmodified	_ALLKNKPLI_					0	0	0			REV__tr|A0A7D7A3A3|A0A7D7A3A3_9CLOTPermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00710PE=3SV=1	REV__tr|A0A7D7A3A3|A0A7D7A3A3_9CLOTPermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00710PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	505.34027099609375	2	505.342052	1008.66955	-1.2256	-0.00061935	0.24452	0.00012356	-0.9811	-0.00049579	505.3419478940064	134.8	1.6252	133.68	133.41	135.03	-1.1226					106	32	5	0	0	0	0.48324	1	10979	10979		44.117	8.4985	1	959590	+		1441	32576	1079	1080	2040	2040					0.16556373650416845
ALLKNNTAL	9	Unmodified	_ALLKNNTAL_					0	0	0		YY1AP1-ARHGEF2|2|fusion;YY1AP1-ARHGEF2|3|fusion;YY1AP1-ARHGEF2|1|fusion;YY1AP1-ARHGEF2|14|fusion;YY1AP1-ARHGEF2|13|fusion;YY1AP1-ARHGEF2|8|fusion;YY1AP1-ARHGEF2|7|fusion;YY1AP1-ARHGEF2|16|fusion;YY1AP1-ARHGEF2|15|fusion;YY1AP1-ARHGEF2|4|fusion;YY1AP1-ARHGEF2|6|fusion;YY1AP1-ARHGEF2|5|fusion;YY1AP1-ARHGEF2|12|fusion;YY1AP1-ARHGEF2|11|fusion;YY1AP1-ARHGEF2|10|fusion;YY1AP1-ARHGEF2|9|fusion;ENSG00000116584|ENST00000361247|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;nc|ENSG00000116584|Q92974-3|ARHGEF2;ARHGEF2|p.D414Lfs*135|1|0.04|ENSG00000116584|chr1:155961889-155961890|-/GTAG|frameshift_variant;ARHGEF2-GON4L|1|fusion;ARHGEF2-GON4L|2|fusion;ARHGEF2-GON4L|3|fusion	YY1AP1-ARHGEF2|2|fusion;ARHGEF2-GON4L|1|fusion	YY1AP1-ARHGEF2|2|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	479.2886047363281	2	479.290017	956.565481	-1.152	-0.00055214	1.4231	0.00068206	0.27106	0.00012992	479.2905830575166	116.71	1.0385	116.58	116.27	117.31	-0.12869					45	20	3	0	0	0	0.21395	1	11164	11164		73.975	16.163	1	230600			1442	36311;112	1080	1081	2041	2041					0.08546046822868902
ALLKQQHIT	9	Unmodified	_ALLKQQHIT_					0	0	0		nc|ENSG00000176994|Q8TEV9-2|SMCR8;ENSG00000176994|ENST00000406438|SMCR8	nc|ENSG00000176994|Q8TEV9-2|SMCR8	nc|ENSG00000176994|Q8TEV9-2|SMCR8	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.322998046875	2	526.316566	1050.61858	0.90669	0.0004772	-1.1713	-0.00061649	-0.26464	-0.00013929	526.315636249945	138.99	0.67526	138.99	138.69	139.37	0					25	13	3	0	0	0	0.027456	1	16266	16266		38.806	9.6566	1	35149			1443	7648	1081	1082	2042	2042					0.09529424605557324
ALLKQQHIT	9	Unmodified	_ALLKQQHIT_					0	0	0		nc|ENSG00000176994|Q8TEV9-2|SMCR8;ENSG00000176994|ENST00000406438|SMCR8	nc|ENSG00000176994|Q8TEV9-2|SMCR8	nc|ENSG00000176994|Q8TEV9-2|SMCR8	MULTI-MATCH	OvCa9_classI_Rep2	2		2	526.316566	1050.61858	-1.0784	-0.00056757	-2.7595	-0.0014524	-3.8379	-0.0020199	526.3148096475795	139.12	0.59042	138.89	138.62	139.21	-0.22696	-0.051111	-0.00054177	NaN	38.806	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8012.5			1444	7648	1081	1082							0.09529424605557324
ALLKVLLQP	9	Unmodified	_ALLKVLLQP_					0	0	0		ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.76092529296875	2	497.836603	993.658653	-0.36244	-0.00018044	-0.69477	-0.00034588	-1.0572	-0.00052632	497.83627260539305	105.16	0.75021	103.14	102.85	103.6	-2.0161					24	14	2	0	0	0	0.027462	1	9521	9521		11.511	5.5899	1	36339			1445	8469	1082	1083	2043	2043					0.16156971276120657
ALLKVLLQP	9	Unmodified	_ALLKVLLQP_					0	0	0		ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	MULTI-MATCH	OvCa9_classI_Rep2	2		2	497.836603	993.658653	-0.88641	-0.00044129	0.31188	0.00015526	-0.57454	-0.00028603	497.8365912693079	103.55	0.74047	102.89	102.66	103.4	-0.65141	-0.12798	0.00064908	NaN	21.96	25	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38063			1446	8469	1082	1083							0.16156971276120657
ALLKVLLQP	9	Unmodified	_ALLKVLLQP_					0	0	0		ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	MULTI-MATCH	OvCa9_classI_Rep3	3		2	497.836603	993.658653	0.16234	8.0818E-05	-0.74934	-0.00037305	-0.587	-0.00029223	497.8361426961502	104.47	1.1432	103.03	102.76	103.9	-1.4347	0.0099587	-0.00040754	NaN	21.96	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49868			1447	8469	1082	1083							0.16156971276120657
ALLKYIETL	9	Unmodified	_ALLKYIETL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	OvCa99_classI_Rep5	1	532.3245239257812	2	532.323525	1062.6325	1.2633	0.00067247	0.47262	0.00025159	1.7359	0.00092406	532.3234413021336	119.46	0.55068	119.46	119.15	119.7	0					25	13	3	0	0	0	0.083631	1	13706	13706		101.6	0	1	308280			1448	4419	1083	1084	2044	2044					0.10368657313983931
ALLLLPARL	9	Unmodified	_ALLLLPARL_					0	0	0			REV__CST3|p.F122Pfs*22|1|0.04|ENSG00000101439|chr20:23633994-23633995|-/CCCGCCGGCTGCGGAGGGGA|frameshift_variant	REV__CST3|p.F122Pfs*22|1|0.04|ENSG00000101439|chr20:23633994-23633995|-/CCCGCCGGCTGCGGAGGGGA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	490.337158203125	2	490.33677	978.658987	0.31976	0.00015679	-1.1553	-0.00056648	-0.83553	-0.00040969	490.3362879264998	135.18	3.9777	134.96	134.64	138.62	-0.22697					225	81	5	0	0	0	0.71475	1	13672	13672		12.959	0	1	7114000	+		1449	16246	1084	1085	2045	2045					0.16880390995981998
ALLLLPVCL	9	Unmodified	_ALLLLPVCL_					0	0	0		ENSG00000214978|ENST00000399363|GSG1L2	ENSG00000214978|ENST00000399363|GSG1L2	ENSG00000214978|ENST00000399363|GSG1L2	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.9349060058594	2	477.806457	953.598361	-0.080097	-3.8271E-05	3.9398	0.0018825	3.8597	0.0018442	477.8082295605342	70.315	1.1184	67.745	67.412	68.53	-2.5707					43	21	3	0	0	0	0.02744	1	5633	5633		39.021	0.21535	1	112210			1450	9195	1085	1086	2046	2046					0.11970537621391486
ALLLRGGKAI	10	Unmodified	_ALLLRGGKAI_					0	0	0			REV__ENSG00000138375|ENST00000357276|SMARCAL1	REV__ENSG00000138375|ENST00000357276|SMARCAL1	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.7922668457031	2	506.337301	1010.66005	-1.509	-0.00076407	1.121	0.00056759	-0.38804	-0.00019648	506.3377808434521	52.937	0.79004	50.123	49.838	50.628	-2.8139					29	15	2	0	0	0	0.026871	1	3539	3539		29.15	3.6994	1	48524	+		1451	19533	1086	1087	2047	2047					0.15514605364899126
ALLLRPALL	9	Unmodified	_ALLLRPALL_					0	0	0		ENST00000559112.2_1_5:50674903-50679047:-|nuORF	ENST00000559112.2_1_5:50674903-50679047:-|nuORF	ENST00000559112.2_1_5:50674903-50679047:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	490.33599853515625	2	490.33677	978.658987	0.31976	0.00015679	-1.1553	-0.00056648	-0.83553	-0.00040969	490.3362879264998	135.18	3.9777	134.96	134.64	138.62	-0.22697					225	81	5	0	0	0	0.65476	1	13677	13677		25.45	1.2474	1	7114000			1452	13712	1087	1088	2048	2048					0.16880390995981998
ALLLRPALL	9	Unmodified	_ALLLRPALL_					0	0	0		ENST00000559112.2_1_5:50674903-50679047:-|nuORF	ENST00000559112.2_1_5:50674903-50679047:-|nuORF	ENST00000559112.2_1_5:50674903-50679047:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	490.3363952636719	2	490.33677	978.658987	-1.5535	-0.00076172	0.74111	0.00036339	-0.81236	-0.00039833	490.33716888209767	136.71	4.5569	135.62	135.22	139.77	-1.0858					270	92	5	0	0	0	0.32337	2	11191	11162;11191		60.294	2.4827	1	5555400			1453	13712	1087	1088	2049;2050	2050					0.16880390995981998
ALLLRPIK	8	Unmodified	_ALLLRPIK_					0	0	0			REV__ENSG00000127364|ENST00000247881|TAS2R4	REV__ENSG00000127364|ENST00000247881|TAS2R4	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.32421875	2	462.323663	922.632772	-1.2966	-0.00059946	1.1557	0.00053433	-0.14087	-6.5129E-05	462.3240471065514	92.205	1.7143	89.663	89.262	90.976	-2.5425					75	33	3	0	0	0	0.73288	1	7993	7993		35.201	1.6851	1	358670	+		1454	18812	1088	1089	2051	2051					0.16836121824508155
ALLLRRKPALL	11	Unmodified	_ALLLRRKPALL_					0	0	0		tr|A0A553SGB4|A0A553SGB4_NIACIMembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_10565PE=4SV=1	tr|A0A553SGB4|A0A553SGB4_NIACIMembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_10565PE=4SV=1	tr|A0A553SGB4|A0A553SGB4_NIACIMembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_10565PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	632.4312744140625	2	632.434807	1262.85506	-5.7395	-0.0036299	-0.067111	-4.2443E-05	-5.8066	-0.0036723	632.4345273657251	163.44	1.2114	163.21	162.72	163.93	-0.22696					106	40	3	0	0	0	0.72567	1	16651	16651		6.7355	3.3255	1	356230			1455	33140	1089	1090	2052	2052					0.23414776169897777
ALLLRRKPALL	11	Unmodified	_ALLLRRKPALL_					0	0	0		tr|A0A553SGB4|A0A553SGB4_NIACIMembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_10565PE=4SV=1	tr|A0A553SGB4|A0A553SGB4_NIACIMembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_10565PE=4SV=1	tr|A0A553SGB4|A0A553SGB4_NIACIMembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_10565PE=4SV=1	MSMS	OvCa9_classI_Rep3	3	632.431396484375	2	632.434807	1262.85506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	164.67	1	163.26	162.76	163.76	-1.4083								0	0	0	0.19474	1	14366	14366		6.7355	3.5763	1				1456	33140	1089	1090	2053	2053					0.23414776169897777
ALLLSLSTPI	10	Unmodified	_ALLLSLSTPI_					0	0	0			REV__ENST00000294161.10_1_11:62496007-62496118:+|nuORF	REV__ENST00000294161.10_1_11:62496007-62496118:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.3218994140625	2	514.323525	1026.6325	-0.3677	-0.00018911	-0.018037	-9.2766E-06	-0.38573	-0.00019839	514.3233925462217	123.57	0.78957	122.2	121.95	122.74	-1.3666					39	15	3	0	0	0	0.71192	1	11728	11728		29.15	1.0681	1	99163	+		1457	24181	1090	1091	2054	2054					0.12024657313986609
ALLLWEILSR	10	Unmodified	_ALLLWEILSR_					0	0	0		ENST00000552233.5_1_12:53823563-53823812:+|nuORF;nc|ENSG00000135409|Q16671-2|AMHR2;ENSG00000135409|ENST00000257863|AMHR2	ENST00000552233.5_1_12:53823563-53823812:+|nuORF	ENST00000552233.5_1_12:53823563-53823812:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	406.2020263671875	3	405.248291	1212.72304	-0.60303	-0.00024438	-1.9857	-0.00080469	-2.5887	-0.0010491	405.2475447739867	49.418	0.77708	46.276	46.043	46.82	-3.1416					21	14	2	0	0	0	0.027056	1	2793	2793		14.694	3.0577	1	17714			1458	4374	1091	1092	2055	2055					0.12519126362280986
ALLMGQLTAQ	10	Unmodified	_ALLMGQLTAQ_					0	0	0			REV__ATP13A1|p.L1022M|1|0.06|ENSG00000105726|chr19:19647170-19647170|G/T|missense_variant	REV__ATP13A1|p.L1022M|1|0.06|ENSG00000105726|chr19:19647170-19647170|G/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.2771606445312	2	523.289159	1044.56377	1.3089	0.00068493	3.0951	0.0016196	4.404	0.0023046	523.2902837257284	29.847	0.29311	27.137	27.017	27.31	-2.7097					6	5	2	0	0	0	0.026968	1	743	743		44.377	12.847	1	5533.2	+		1459	15674	1092	1093	2056	2056					0.04326669742613376
ALLNEPKIL	9	Unmodified	_ALLNEPKIL_					0	0	0		tr|A0A7D6ZEF3|A0A7D6ZEF3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13475PE=4SV=1	tr|A0A7D6ZEF3|A0A7D6ZEF3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13475PE=4SV=1	tr|A0A7D6ZEF3|A0A7D6ZEF3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13475PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	505.8151550292969	2	505.815867	1009.61718	-0.25452	-0.00012874	-0.14096	-7.1299E-05	-0.39548	-0.00020004	505.8156837939656	107.58	1.5169	107.27	106.97	108.49	-0.30836					48	30	2	0	0	0	0.51177	1	10056	10056		41.427	3.6151	1	319880			1460	35481	1093	1094	2057	2057					0.11275790516799589
ALLNIKVKL	9	Unmodified	_ALLNIKVKL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF;ENST00000397031.2_1_2:182825941-182826409:-|nuORF	ENSG00000111057|ENST00000388835|KRT18;ENST00000397031.2_1_2:182825941-182826409:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa99_classI_Rep5	1	506.3512878417969	2	506.349877	1010.6852	2.8562	0.0014462	-0.63123	-0.00031962	2.225	0.0011266	506.34953695084715	99.06	1.6864	99.06	98.801	100.49	0					96	40	5	0	0	0	0.027416	2	10918	10918;10948		138.24	44.236	1	36276000			1461	2808;11336	1094	1095	2058;2059	2058					0.18028660167453836
ALLNIKVKL	9	Unmodified	_ALLNIKVKL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF;ENST00000397031.2_1_2:182825941-182826409:-|nuORF	ENSG00000111057|ENST00000388835|KRT18;ENST00000397031.2_1_2:182825941-182826409:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa9_classI_Rep2	2	506.3486022949219	2	506.349877	1010.6852	-1.1145	-0.00056432	0.37422	0.00018949	-0.74027	-0.00037483	506.35021174887055	99.6	1.786	98.77	98.517	100.3	-0.83051					93	35	5	0	0	0	0.098892	1	9075	9075		97.473	9.7184	1	1082600			1462	2808;11336	1094	1095	2060	2060					0.18028660167453836
ALLNIKVKL	9	Unmodified	_ALLNIKVKL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF;ENST00000397031.2_1_2:182825941-182826409:-|nuORF	ENSG00000111057|ENST00000388835|KRT18;ENST00000397031.2_1_2:182825941-182826409:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.8111572265625	2	506.349877	1010.6852	-1.3462	-0.00068164	-0.049425	-2.5026E-05	-1.3956	-0.00070667	506.34991903636995	100.73	2.3758	99.12	98.85	101.23	-1.6053					108	45	5	0	0	0	0.027091	1	6850	6850		94.006	0	1	1507100			1463	2808;11336	1094	1095	2061	2061					0.18028660167453836
ALLPDLSGRLL	11	Unmodified	_ALLPDLSGRLL_					0	0	0		nc|ENSG00000089351|Q96CP6-2|GRAMD1A;nc|ENSG00000089351|Q96CP6-3|GRAMD1A;ENSG00000089351|ENST00000317991|GRAMD1A;ENST00000598118.1_1_19:35506495-35517042:+|nuORF	nc|ENSG00000089351|Q96CP6-2|GRAMD1A	nc|ENSG00000089351|Q96CP6-2|GRAMD1A	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3561401367188	2	584.358431	1166.70231	-2.312	-0.0013511	-1.149	-0.00067141	-3.461	-0.0020225	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.71789	1	14579	14579		23.523	4.4192	1	180810			1464	1822	1095	1096	2062	2062					0.12562535982624468
ALLPEPKEEDG	11	Unmodified	_ALLPEPKEEDG_					0	0	0		ENSG00000179832|ENST00000326134|MROH1;nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF;ENST00000544576.1_1_8:145297127-145303835:+|nuORF	ENSG00000179832|ENST00000326134|MROH1	ENSG00000179832|ENST00000326134|MROH1	MULTI-MSMS	OvCa9_classI_Rep3	3	599.3034057617188	2	599.303518	1196.59248	1.2016	0.00072011	-0.76893	-0.00046082	0.43265	0.00025929	599.3027980261922	115.74	1.1842	114.7	114.4	115.59	-1.0414					49	23	4	0	0	0	0.68399	1	8606	8606		35.152	0	1	169750			1465	7843	1096	1097	2063	2063					0.0020506585276507394
ALLPLAWLAQ	10	Unmodified	_ALLPLAWLAQ_					0	0	0		ENSG00000113262|ENST00000517717|GRM6	ENSG00000113262|ENST00000517717|GRM6	ENSG00000113262|ENST00000517717|GRM6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.32373046875	2	548.331685	1094.64882	0.62428	0.00034231	1.7149	0.00094036	2.3392	0.0012827	548.3333016622339	35.493	0.19941	32.644	32.54	32.74	-2.849					5	3	2	0	0	0	0.026982	1	1142	1142		38.806	9.6566	1	5402			1466	2957	1097	1098	2064	2064					0.10527783270731561
ALLPLLERV	9	Unmodified	_ALLPLLERV_					0	0	0		ENSG00000160796|ENST00000450053|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	ENSG00000160796|ENST00000450053|NBEAL2	ENSG00000160796|ENST00000450053|NBEAL2	MULTI-MSMS	OvCa99_classI_Rep5	1	512.3328857421875	2	512.331685	1022.64882	1.8379	0.00094161	0.10316	5.2854E-05	1.9411	0.00099447	512.331552485012	128.3	0.70271	128.3	127.95	128.65	0					32	14	3	0	0	0	0.38969	1	14857	14857		52.937	10.541	1	363160			1467	6092	1098	1099	2065	2065					0.13839783270748285
ALLPLMHA	8	Oxidation (M)	_ALLPLM(Oxidation (M))HA_		ALLPLM(1)HA		ALLPLM(81)HA	0	0	1			REV__RNF145|p.H596Pfs*7|1|0.02|ENSG00000145860|chr5:159158875-159158876|-/TCAACAG|frameshift_variant	REV__RNF145|p.H596Pfs*7|1|0.02|ENSG00000145860|chr5:159158875-159158876|-/TCAACAG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	441.283203125	2	441.249306	880.484059	2.6462	0.0011676	-3.084	-0.0013608	-0.43782	-0.00019319	441.2472966114097	93.358	0.33172	93.358	93.136	93.468	0					14	7	3	0	0	0	0.028476	1	10097	10097		80.997	6.4804	1	525090	+		1468	19987	1099	1100	2066	2066		461			0.039036478593061474
ALLPLPKPAAP	11	Unmodified	_ALLPLPKPAAP_					0	0	0		TAF4|p.K971Ffs*103|1|0.04|ENSG00000130699|chr20:61998986-61998987|-/GAGGGTGAAG|frameshift_variant;ENSG00000130699|ENST00000252996|TAF4	TAF4|p.K971Ffs*103|1|0.04|ENSG00000130699|chr20:61998986-61998987|-/GAGGGTGAAG|frameshift_variant	TAF4|p.K971Ffs*103|1|0.04|ENSG00000130699|chr20:61998986-61998987|-/GAGGGTGAAG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	544.3470458984375	2	544.347335	1086.68012	0.74405	0.00040502	-0.74307	-0.00040449	0.00098399	5.3563E-07	544.346788814307	129.27	1.1853	129.05	128.77	129.96	-0.22696					60	23	4	0	0	0	0.71929	1	12732	12732		23.042	0	1	195480			1469	32943	1100	1101	2067	2067					0.14024356304844332
ALLPQGRRRG	10	Unmodified	_ALLPQGRRRG_					0	0	0			REV__ENSG00000130309|ENST00000252599|COLGALT1	REV__ENSG00000130309|ENST00000252599|COLGALT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3440551757812	2	562.343981	1122.67341	1.2434	0.00069921	-2.2131	-0.0012445	-0.96974	-0.00054533	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.72319	1	14080	14080		27.882	2.4321	1	683710	+		1470	18940	1101	1102	2068	2068					0.11697856196815337
ALLPRLQA	8	Unmodified	_ALLPRLQA_					0	0	0			REV__ENST00000586439.1_1_19:36604659-36605969:-|nuORF	REV__ENST00000586439.1_1_19:36604659-36605969:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	441.2841491699219	2	441.281995	880.549437	2.9895	0.0013192	-0.42296	-0.00018664	2.5665	0.0011326	441.28165021860565	93.084	0.8693	93.084	92.762	93.632	0					43	20	3	0	0	0	0.59148	1	10068	10068		65.803	5.5092	1	4282600	+		1471	27864	1102	1103	2069	2069					0.10438385376653514
ALLPRLQGQ	9	Unmodified	_ALLPRLQGQ_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.787353515625	2	498.303458	994.592364	-1.245	-0.0006204	-2.2937	-0.001143	-3.5387	-0.0017634	498.301704963697	45.41	0.52351	42.371	42.281	42.805	-3.0385					13	9	2	0	0	0	0.027462	1	2362	2362		12.207	0	1	17693	+		1472	17630	1103	1104	2070	2070					0.0948515543409485
ALLQARPR	8	Unmodified	_ALLQARPR_					0	0	0		ENSG00000144040|ENST00000272433|SFXN5;ENST00000474528.5_1_2:73172153-73286292:-|nuORF	ENSG00000144040|ENST00000272433|SFXN5	ENSG00000144040|ENST00000272433|SFXN5	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.7903747558594	2	462.790518	923.566484	0.27277	0.00012624	-0.18065	-8.3604E-05	0.092117	4.2631E-05	462.7903124837854	33.565	1.4882	30.777	30.259	31.747	-2.7881					68	29	3	0	0	0	0.7043	1	908	908		42.474	7.2737	1	162630			1473	5125	1104	1105	2071	2071					0.1016430598245961
ALLQGHESYV	10	Unmodified	_ALLQGHESYV_					0	0	0		nc|ENSG00000187260|Q86TI4-4|WDR86;ENSG00000187260|ENST00000334493|WDR86	nc|ENSG00000187260|Q86TI4-4|WDR86	nc|ENSG00000187260|Q86TI4-4|WDR86	MULTI-SECPEP	OvCa9_classI_Rep2	2	557.8152465820312	2	558.787838	1115.56112	1.8306	0.0010229	0.22666	0.00012665	2.0572	0.0011495	558.7875928357622	91.176	1.6962	89.94	88.946	90.642	-1.2355					42	32	2	0	0	0	0.026802	1	8075	8075		42.396	0	1	49949			1474	15224	1105	1106	2072	2072					0.007965376093125087
ALLQKLASPNL	11	Unmodified	_ALLQKLASPNL_					0	0	0		nc|ENSG00000042062|Q96MK2|RIPOR3;ENSG00000042062|ENST00000327979|RIPOR3	nc|ENSG00000042062|Q96MK2|RIPOR3	nc|ENSG00000042062|Q96MK2|RIPOR3	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3561401367188	2	584.358431	1166.70231	-2.312	-0.0013511	-1.149	-0.00067141	-3.461	-0.0020225	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.72479	1	14686	14686		18.262	2.6203	1	180810			1475	1121	1106	1107	2073	2073					0.1256253598260173
ALLQKLASPNL	11	Unmodified	_ALLQKLASPNL_					0	0	0		nc|ENSG00000042062|Q96MK2|RIPOR3;ENSG00000042062|ENST00000327979|RIPOR3	nc|ENSG00000042062|Q96MK2|RIPOR3	nc|ENSG00000042062|Q96MK2|RIPOR3	MULTI-MSMS	OvCa9_classI_Rep3	3	584.3563842773438	2	584.358431	1166.70231	-4.6254	-0.0027029	1.1397	0.00066599	-3.4857	-0.0020369	584.3589865391973	145.25	4.5766	144.28	142.9	147.48	-0.97299					233	91	4	0	0	0	0.72064	1	12224	12224		22.58	0	1	156220			1476	1121	1106	1107	2074	2074					0.1256253598260173
ALLQLRTPV	9	Unmodified	_ALLQLRTPV_					0	0	0		nc|ENSG00000178226|Q5K4E3-2|PRSS36;nc|ENSG00000178226|Q5K4E3-3|PRSS36;ENSG00000178226|ENST00000268281|PRSS36	nc|ENSG00000178226|Q5K4E3-2|PRSS36	nc|ENSG00000178226|Q5K4E3-2|PRSS36	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.82061767578125	2	505.821484	1009.62842	-0.84667	-0.00042827	0.56914	0.00028788	-0.27753	-0.00014038	505.82169317246957	104.11	1.6015	101.99	101.69	103.3	-2.1192					81	30	4	0	0	0	0.36502	1	9425	9425		55.504	2.1528	1	519330			1477	7742	1107	1108	2075	2075					0.12398612610934379
ALLQSDVRL	9	Unmodified	_ALLQSDVRL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	OvCa99_classI_Rep5	1	507.8013610839844	2	507.800749	1013.58694	2.6123	0.0013265	-0.19733	-0.0001002	2.415	0.0012263	507.8005231625733	94.365	0.94063	94.365	94.051	94.992	0					40	21	2	0	0	0	0.1149	2	10285	10254;10285		93.143	18.1	1	4560400			1478	7740	1108	1109	2076;2077	2077					0.08069431851606623
ALLRPALPLI	10	Unmodified	_ALLRPALPLI_					0	0	0		ENSG00000033100|ENST00000035307|CHPF2;nc|ENSG00000033100|Q9P2E5-2|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	MULTI-MSMS	OvCa9_classI_Rep2	2	538.8629150390625	2	538.863152	1075.71175	-0.23326	-0.0001257	-0.99858	-0.0005381	-1.2318	-0.00066379	538.862877379651	131.84	7.1203	131.62	131.3	138.42	-0.22697					401	145	6	0	0	0	0.33316	3	13121	13121;13240;13673		76.847	6.6555	1	12803000			1479	1074	1109	1110	2078;2079;2080	2078					0.17692349058779655
ALLRPALPLI	10	Unmodified	_ALLRPALPLI_					0	0	0		ENSG00000033100|ENST00000035307|CHPF2;nc|ENSG00000033100|Q9P2E5-2|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	MULTI-MSMS	OvCa9_classI_Rep3	3	538.8626708984375	2	538.863152	1075.71175	0.50313	0.00027112	-1.3946	-0.0007515	-0.89148	-0.00048038	538.8625358740957	133.13	11.263	132	131.63	142.9	-1.1249					494	228	5	0	0	0	0.49049	3	10808	10808;10973;11301		55.504	5.9224	1	10229000			1480	1074	1109	1110	2081;2082;2083	2081					0.17692349058779655
ALLRPALPLI	10	Unmodified	_ALLRPALPLI_					0	0	0		ENSG00000033100|ENST00000035307|CHPF2;nc|ENSG00000033100|Q9P2E5-2|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.8626098632812	2	538.863152	1075.71175	2.6703	0.0014389	-4.1829	-0.002254	-1.5125	-0.00081505	538.8612720845362	133.45	7.6689	131.93	131.41	139.08	-1.5257					434	157	6	0	0	0	0.66721	1	13401	13401		34.173	5.023	1	17348000			1481	1074	1109	1110	2084	2084					0.17692349058779655
ALLRPALPLIL	11	Unmodified	_ALLRPALPLIL_					0	0	0		ENSG00000033100|ENST00000035307|CHPF2;nc|ENSG00000033100|Q9P2E5-2|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	MULTI-MSMS	OvCa9_classI_Rep2	2	595.4053344726562	2	595.405184	1188.79581	-3.2474	-0.0019335	3.1968	0.0019034	-0.05051	-3.0074E-05	595.4069549535949	148.18	1.6013	147.95	147.62	149.22	-0.22697					84	31	4	0	0	0	0.46066	4	14979	14979;14984;15035;15041		56.721	17.948	1	246660			1482	1074	1110	1111	2085;2086;2087;2088	2085					0.20896880155692088
ALLRYVLSI	9	Unmodified	_ALLRYVLSI_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;ENST00000534767.1_1_11:43919588-43920434:+|nuORF	nc|ENSG00000129657|Q92503-3|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	MULTI-MSMS	OvCa99_classI_Rep5	1	524.33349609375	2	524.331685	1046.64882	1.5859	0.00083155	-0.057214	-2.9999E-05	1.5287	0.00080155	524.3316062502239	128.82	0.79468	128.82	128.47	129.26	0					35	16	3	0	0	0	0.28934	1	14924	14924		64.207	6.396	1	299830			1483	3941	1111	1112	2089	2089					0.1273578327075029
ALLSDSKVI	9	Unmodified	_ALLSDSKVI_					0	0	0		ENST00000427257.5_1_7:102789954-102789993:-|nuORF	ENST00000427257.5_1_7:102789954-102789993:-|nuORF	ENST00000427257.5_1_7:102789954-102789993:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.2850341796875	2	473.2844	944.554247	0.49675	0.00023511	-0.98818	-0.00046769	-0.49143	-0.00023259	473.2838233997317	89.158	1.4369	86.555	86.136	87.573	-2.6027					64	28	3	0	0	0	0.27001	1	7647	7647		66.429	5.4573	1	552920			1484	11752	1112	1113	2090	2090					0.07975224728750163
ALLSRLEQI	9	Unmodified	_ALLSRLEQI_					0	0	0		ENSG00000125970|ENST00000246194|RALY;nc|ENSG00000125970|Q9UKM9-2|RALY;ENST00000481580.1_1_20:32664521-32665129:+|nuORF;RALY|p.A212P|1|0.19|ENSG00000125970|chr20:34076791-34076791|G/C|missense_variant	ENSG00000125970|ENST00000246194|RALY	ENSG00000125970|ENST00000246194|RALY	MULTI-MSMS	OvCa99_classI_Rep5	1	521.8186645507812	2	521.816399	1041.61824	-0.58471	-0.00030511	1.3743	0.00071711	0.78955	0.000412	521.8172328719529	105.06	0.61461	105.06	104.79	105.4	0					36	13	4	0	0	0	0.1243	1	11800	11800		90.601	5.6853	1	3411400			1485	3757	1113	1114	2091	2091					0.09910004885705348
ALLSRTLLV	9	Unmodified	_ALLSRTLLV_					0	0	0			REV__ENSG00000095752|ENST00000264563|IL11	REV__ENSG00000095752|ENST00000264563|IL11	MULTI-MSMS	OvCa9_classI_Rep2	2	493.3249206542969	2	493.32386	984.633166	0.32462	0.00016014	-0.47453	-0.0002341	-0.14991	-7.3954E-05	493.3234613432452	114.6	1.4806	114.48	114.16	115.64	-0.11777					70	29	3	0	0	0	0.35444	1	10907	10907		56.721	3.7844	1	205500	+		1486	17295	1114	1115	2092	2092					0.14023496753702602
ALLTKKPLS	9	Unmodified	_ALLTKKPLS_					0	0	0			REV__ENSG00000124532|ENST00000378386|MRS2	REV__ENSG00000124532|ENST00000378386|MRS2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.77752685546875	2	485.81841	969.622267	0.1232	5.9853E-05	-0.67836	-0.00032956	-0.55516	-0.00026971	485.8183602554012	47.516	0.24499	44.409	44.336	44.581	-3.1077					6	4	2	0	0	0	0.027462	1	2563	2563		23.042	1.0826	1	11307	+		1487	18690	1115	1116	2093	2093					0.13624094379429152
ALLTTKIGF	9	Unmodified	_ALLTTKIGF_					0	0	0		nc|ENSG00000186976|Q5THR3-5|EFCAB6;ENSG00000186976|ENST00000262726|EFCAB6;nc|ENSG00000186976|Q5THR3-2|EFCAB6	nc|ENSG00000186976|Q5THR3-5|EFCAB6	nc|ENSG00000186976|Q5THR3-5|EFCAB6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.7398681640625	2	482.29731	962.580068	-0.36024	-0.00017374	0.35888	0.00017308	-0.0013688	-6.6018E-07	482.29729353340474	105.01	0.90132	102.94	102.73	103.63	-2.0772					26	17	2	0	0	0	0.027461	1	9575	9575		49.442	3.4896	1	45158			1488	8380	1116	1117	2094	2094					0.09728118971031563
ALLTTKIGF	9	Unmodified	_ALLTTKIGF_					0	0	0		nc|ENSG00000186976|Q5THR3-5|EFCAB6;ENSG00000186976|ENST00000262726|EFCAB6;nc|ENSG00000186976|Q5THR3-2|EFCAB6	nc|ENSG00000186976|Q5THR3-5|EFCAB6	nc|ENSG00000186976|Q5THR3-5|EFCAB6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	482.29731	962.580068	-1.0423	-0.00050271	0.95533	0.00046075	-0.086989	-4.1954E-05	482.29765251689395	103.48	0.83916	102.8	102.57	103.41	-0.68459	-0.090705	0.00060395	NaN	49.442	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38458			1489	8380	1116	1117							0.09728118971031563
ALLTTKIGF	9	Unmodified	_ALLTTKIGF_					0	0	0		nc|ENSG00000186976|Q5THR3-5|EFCAB6;ENSG00000186976|ENST00000262726|EFCAB6;nc|ENSG00000186976|Q5THR3-2|EFCAB6	nc|ENSG00000186976|Q5THR3-5|EFCAB6	nc|ENSG00000186976|Q5THR3-5|EFCAB6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	482.29731	962.580068	0.34935	0.00016849	-0.49854	-0.00024044	-0.14919	-7.1955E-05	482.2969350181184	104.36	0.93468	102.93	102.71	103.64	-1.4347	0.042248	-0.00079845	NaN	49.442	27	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41346			1490	8380	1116	1117							0.09728118971031563
ALLTVIFDSI	10	Unmodified	_ALLTVIFDSI_					0	0	0			REV__tr|A0A7D6VQP0|A0A7D6VQP0_9CLOTYitTfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02515PE=4SV=1	REV__tr|A0A7D6VQP0|A0A7D6VQP0_9CLOTYitTfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02515PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	546.801025390625	2	546.320983	1090.62741	0.86214	0.000471	2.747	0.0015008	3.6092	0.0019718	546.8219689035113	120.96	0.15547	119.93	119.8	119.96	-1.0271					4	2	2	0	0	0	0.026956	1	9234	9234		34.173	5.023	1	8044.5	+		1491	31343	1117	1118	2095	2095					0.0857235345135905
ALLVQPRR	8	Unmodified	_ALLVQPRR_					0	0	0			REV__ENST00000598636.1_1_19:47730148-47730220:-|nuORF	REV__ENST00000598636.1_1_19:47730148-47730220:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	476.806396484375	2	476.806168	951.597784	0.28578	0.00013626	-0.46686	-0.0002226	-0.18107	-8.6337E-05	476.80579878083404	40.986	1.3783	38.276	37.848	39.226	-2.7097					68	27	3	0	0	0	0.74679	1	2122	2122		28.254	0	1	368580	+		1492	28013	1118	1119	2096	2096					0.12004879016558334
ALLWSGVVLL	10	Unmodified	_ALLWSGVVLL_					0	0	0			REV__ENSG00000186204|ENST00000550308|CYP4F12	REV__ENSG00000186204|ENST00000550308|CYP4F12	MULTI-MSMS	OvCa9_classI_Rep2	2	535.8331298828125	2	535.83406	1069.65357	-1.8919	-0.0010137	-1.6263	-0.00087141	-3.5181	-0.0018851	535.8327441577118	116.95	1.4861	116.82	116.52	118	-0.12869					62	29	5	0	0	0	0.49049	1	11191	11191		55.504	7.5886	1	96444	+		1493	22567	1119	1120	2097	2097					0.12152667413533891
ALLYLNRSL	9	Unmodified	_ALLYLNRSL_					0	0	0		ENST00000413432.2_1_2:242383334-242383583:+|nuORF	ENST00000413432.2_1_2:242383334-242383583:+|nuORF	ENST00000413432.2_1_2:242383334-242383583:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8164672851562	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.42676	1	13978	13978		49.442	8.6634	1	166960			1494	11564	1120	1121	2098	2098					0.09498308748334239
ALMDEVVKA	9	Unmodified	_ALMDEVVKA_					0	0	0		PGK1|p.T363I|1|0.07|ENSG00000102144|chrX:78125025-78125025|C/T|missense_variant;nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1	PGK1|p.T363I|1|0.07|ENSG00000102144|chrX:78125025-78125025|C/T|missense_variant	PGK1|p.T363I|1|0.07|ENSG00000102144|chrX:78125025-78125025|C/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	488.26483154296875	2	488.26261	974.510668	1.7297	0.00084454	0.55752	0.00027222	2.2872	0.0011168	488.2626574740586	87.603	0.5835	87.603	87.378	87.962	0					29	13	3	0	0	0	0.029147	1	9281	9281		136.27	48.514	1	4092100			1495	2224	1121	1122	2099	2099					0.022392919599724337
ALMDEVVKA	9	Unmodified	_ALMDEVVKA_					0	0	0		PGK1|p.T363I|1|0.07|ENSG00000102144|chrX:78125025-78125025|C/T|missense_variant;nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1	PGK1|p.T363I|1|0.07|ENSG00000102144|chrX:78125025-78125025|C/T|missense_variant	PGK1|p.T363I|1|0.07|ENSG00000102144|chrX:78125025-78125025|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.2640686035156	2	488.26261	974.510668	0.082322	4.0195E-05	-0.050076	-2.445E-05	0.032246	1.5744E-05	488.26255379941534	90.644	1.2274	88.069	87.801	89.029	-2.575					40	23	2	0	0	0	0.035142	1	7820	7820		131.03	34.841	1	369220			1496	2224	1121	1122	2100	2100					0.022392919599724337
ALMDEVVKA	9	Unmodified	_ALMDEVVKA_					0	0	0		PGK1|p.T363I|1|0.07|ENSG00000102144|chrX:78125025-78125025|C/T|missense_variant;nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1	PGK1|p.T363I|1|0.07|ENSG00000102144|chrX:78125025-78125025|C/T|missense_variant	PGK1|p.T363I|1|0.07|ENSG00000102144|chrX:78125025-78125025|C/T|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	488.26261	974.510668	2.0632	0.0010074	-1.591	-0.00077684	0.47217	0.00023054	488.26160636884595	89.65	1.4346	88.348	87.79	89.225	-1.302	0.18172	-0.0012808	NaN	131.03	79	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160660			1497	2224	1121	1122							0.022392919599724337
ALMDEVVKA	9	Unmodified	_ALMDEVVKA_					0	0	0		PGK1|p.T363I|1|0.07|ENSG00000102144|chrX:78125025-78125025|C/T|missense_variant;nc|ENSG00000102144|P00558-2|PGK1;ENSG00000102144|ENST00000373316|PGK1	PGK1|p.T363I|1|0.07|ENSG00000102144|chrX:78125025-78125025|C/T|missense_variant	PGK1|p.T363I|1|0.07|ENSG00000102144|chrX:78125025-78125025|C/T|missense_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	488.26261	974.510668	-1.0157	-0.00049592	1.2344	0.00060269	0.21868	0.00010677	488.2630926760545	90.163	1.1733	88.082	87.85	89.023	-2.0805	-0.08438	0.0014783	NaN	131.03	52	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	462150			1498	2224	1121	1122							0.022392919599724337
ALMDQVHHM	9	Unmodified	_ALMDQVHHM_					0	0	0		ENSG00000116497|ENST00000373475|S100PBP	ENSG00000116497|ENST00000373475|S100PBP	ENSG00000116497|ENST00000373475|S100PBP	MULTI-MSMS	OvCa99_classI_Rep5	1	541.2514038085938	2	541.249511	1080.48447	-0.36566	-0.00019791	0.66595	0.00036045	0.30029	0.00016253	541.2496467958421	63.731	0.47763	63.731	63.496	63.974	0					23	11	3	0	0	0	0.14998	1	5750	5750		84.916	26.134	1	864590			1499	3182	1122	1123	2101	2101					-0.05255300483167957
ALMKQANVN	9	Unmodified	_ALMKQANVN_					0	0	0		tr|A0A7D6VTL1|A0A7D6VTL1_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02945PE=4SV=1	tr|A0A7D6VTL1|A0A7D6VTL1_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02945PE=4SV=1	tr|A0A7D6VTL1|A0A7D6VTL1_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02945PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.7668151855469	2	494.765852	987.51715	0.5334	0.00026391	-1.1134	-0.00055085	-0.57995	-0.00028694	494.7652083816197	68.443	0.83561	64.953	64.671	65.507	-3.4902					55	16	4	0	0	0	0.34496	1	5109	5109		57.811	4.4598	1	1917800			1500	35125	1123	1124	2102	2102					0.022892299113550507
ALMLLWLLS	9	Oxidation (M)	_ALM(Oxidation (M))LLWLLS_		ALM(1)LLWLLS		ALM(80)LLWLLS	0	0	1		ENSG00000110195|ENST00000393676|FOLR1	ENSG00000110195|ENST00000393676|FOLR1	ENSG00000110195|ENST00000393676|FOLR1	MULTI-MSMS	OvCa9_classI_Rep2	2	538.3157348632812	2	538.314646	1074.61474	-0.21584	-0.00011619	2.5879	0.0013931	2.372	0.0012769	538.315698991444	71.466	1.8309	68.959	68.281	70.112	-2.5072					83	34	4	0	0	0	0.17908	1	5752	5752		79.939	8.6435	1	1027100			1501	2762	1124	1125	2103	2103		90			0.08041618787501648
ALMPPVKQV	9	Unmodified	_ALMPPVKQV_					0	0	0		nc|ENSG00000165322|Q8IWW6-3|ARHGAP12;nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12	nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	MULTI-MSMS	OvCa99_classI_Rep5	1	491.7926330566406	2	491.791338	981.568123	1.9618	0.00096478	0.56888	0.00027977	2.5306	0.0012446	491.7915912118916	80.506	1.0576	80.506	80.148	81.206	0					55	24	3	0	0	0	0.38529	1	8257	8257		53.351	14.545	1	653390			1502	6550	1125	1126	2104	2104					0.07660178956211894
ALMPVLNQV	9	Unmodified	_ALMPVLNQV_					0	0	0		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	OvCa99_classI_Rep5	1	492.78204345703125	2	492.78097	983.547388	1.6444	0.00081032	0.34389	0.00016946	1.9883	0.00097979	492.78095096568154	128.13	0.88878	128.13	127.81	128.7	0					43	18	4	0	0	0	0.098892	2	14849	14827;14849		97.473	34.166	1	894820			1503	9247	1126	1127	2105;2106	2106					0.05495588576548016
ALNAVRLLV	9	Unmodified	_ALNAVRLLV_					0	0	0		ENSG00000109062|ENST00000262613|NHERF1	ENSG00000109062|ENST00000262613|NHERF1	ENSG00000109062|ENST00000262613|NHERF1	MULTI-MSMS	OvCa9_classI_Rep2	2	484.81591796875	2	484.816202	967.617851	0.098293	4.7654E-05	-0.21042	-0.00010202	-0.11213	-5.4362E-05	484.8159176312288	110.29	1.4347	110.12	109.46	110.9	-0.17237					55	28	3	0	0	0	0.31747	1	10380	10380		60.972	15.02	1	136950			1504	2692	1127	1128	2107	2107					0.1327462995652695
ALNEKLVNL	9	Unmodified	_ALNEKLVNL_					0	0	0		ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	MULTI-MSMS	OvCa9_classI_Rep2	2	507.3025207519531	2	507.303124	1012.5917	0.59039	0.00029951	-0.74547	-0.00037818	-0.15508	-7.8672E-05	507.3025301605982	91.742	1.6246	90.506	90.114	91.738	-1.2355					60	30	3	0	0	0	0.046778	3	8148	8143;8148;8155		120.87	35.865	1	545430			1505	7541	1128	1129	2108;2109;2110	2109					0.08590315994376851
ALNEKLVNL	9	Unmodified	_ALNEKLVNL_					0	0	0		ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	MULTI-MSMS	OvCa9_classI_Rep3	3	507.3031005859375	2	507.303124	1012.5917	-1.7474	-0.00088646	0.41694	0.00021152	-1.3305	-0.00067494	507.3030860403442	92.459	1.583	90.435	90.135	91.718	-2.0241					57	31	3	0	0	0	0.018335	2	5869	5863;5869		148.99	58.617	1	735880			1506	7541	1128	1129	2111;2112	2112					0.08590315994376851
ALNEKLVNL	9	Unmodified	_ALNEKLVNL_					0	0	0		ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	ENSG00000175390|ENST00000651655|EIF3F	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.3039245605469	2	507.303124	1012.5917	-1.1568	-0.00058687	-0.082529	-4.1867E-05	-1.2394	-0.00062873	507.3030644930312	92.983	1.3432	90.475	89.959	91.302	-2.5072					45	23	3	0	0	0	0.035142	2	8084	8084;8095		131.03	37.836	1	729040			1507	7541	1128	1129	2113;2114	2113					0.08590315994376851
ALNEKQIL	8	Unmodified	_ALNEKQIL_					0	0	0		ENST00000400595.3_1_13:21893667-21894339:+|nuORF;nc|ENSG00000198055|P43250-3|GRK6;ENSG00000198055|ENST00000355472|GRK6;nc|ENSG00000198055|P43250-2|GRK6;ENSG00000198873|ENST00000392870|GRK5;GRK6-ZNF346|1|fusion	ENST00000400595.3_1_13:21893667-21894339:+|nuORF	ENST00000400595.3_1_13:21893667-21894339:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.782470703125	2	464.776742	927.538931	-0.84076	-0.00039077	-0.43405	-0.00020174	-1.2748	-0.0005925	464.7763197302877	52.955	0.29072	49.747	49.602	49.893	-3.208					8	5	2	0	0	0	0.028476	1	3183	3183		44.117	1.7207	1	86375			1508	8778	1129	1130	2115	2115					0.07226357931563143
ALNELLQHV	9	Unmodified	_ALNELLQHV_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.D1277Afs*54|1|0.12|ENSG00000137076|chr9:35711644-35711645|-/G|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OvCa99_classI_Rep5	1	518.7940063476562	2	518.792924	1035.57129	0.54209	0.00028123	0.47021	0.00024394	1.0123	0.00052517	518.7931763148916	103.24	2.5514	103.24	102.85	105.4	0					155	59	6	0	0	0	0.012051	3	11512	11512;11543;11574		162.25	57.506	1	47574000			1509	4552	1130	1131	2116;2117;2118	2116					0.05493145334571636
ALNELLQHV	9	Unmodified	_ALNELLQHV_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.D1277Afs*54|1|0.12|ENSG00000137076|chr9:35711644-35711645|-/G|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	518.792924	1035.57129	0.7364	0.00038204	-2.0129	-0.0010443	-1.2765	-0.00066223	518.7917154077347	104.69	1.8715	103.25	102.92	104.79	-1.4347	-0.04424	-0.0019439	NaN	162.25	105	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2256000			1510	4552	1130	1131							0.05493145334571636
ALNGAIMKI	9	Unmodified	_ALNGAIMKI_					0	0	0		ENST00000511499.5_1_4:175413109-175416797:-|nuORF;nc|ENSG00000164120|P15428-3|HPGD;nc|ENSG00000164120|P15428-5|HPGD;ENSG00000164120|ENST00000296522|HPGD	ENST00000511499.5_1_4:175413109-175416797:-|nuORF	ENST00000511499.5_1_4:175413109-175416797:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	465.7771301269531	2	465.775688	929.536823	2.5111	0.0011696	-0.058954	-2.7459E-05	2.4522	0.0011422	465.7755656902012	91.603	0.67559	91.603	91.332	92.008	0					34	15	3	0	0	0	0.01029	1	9870	9870		167.82	9.8351	1	2488500			1511	6416	1131	1132	2119	2119					0.06923605922111165
ALNGAIMKI	9	Unmodified	_ALNGAIMKI_					0	0	0		ENST00000511499.5_1_4:175413109-175416797:-|nuORF;nc|ENSG00000164120|P15428-3|HPGD;nc|ENSG00000164120|P15428-5|HPGD;ENSG00000164120|ENST00000296522|HPGD	ENST00000511499.5_1_4:175413109-175416797:-|nuORF	ENST00000511499.5_1_4:175413109-175416797:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	465.775688	929.536823	-0.0055828	-2.6003E-06	-3.5343	-0.0016462	-3.5399	-0.0016488	465.77390578203216	93.146	0.97366	91.978	91.706	92.68	-1.168	0.13593	-0.00090329	NaN	167.82	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143600			1512	6416	1131	1132							0.06923605922111165
ALNGAIMKI	9	Unmodified	_ALNGAIMKI_					0	0	0		ENST00000511499.5_1_4:175413109-175416797:-|nuORF;nc|ENSG00000164120|P15428-3|HPGD;nc|ENSG00000164120|P15428-5|HPGD;ENSG00000164120|ENST00000296522|HPGD	ENST00000511499.5_1_4:175413109-175416797:-|nuORF	ENST00000511499.5_1_4:175413109-175416797:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	465.775688	929.536823	-1.0425	-0.00048559	-2.6966	-0.001256	-3.7391	-0.0017416	465.7743440847553	93.815	1.0189	91.853	91.526	92.545	-1.9617	0.01091	-0.00012286	NaN	167.82	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186130			1513	6416	1131	1132							0.06923605922111165
ALNGAIMKI	9	Unmodified	_ALNGAIMKI_					0	0	0		ENST00000511499.5_1_4:175413109-175416797:-|nuORF;nc|ENSG00000164120|P15428-3|HPGD;nc|ENSG00000164120|P15428-5|HPGD;ENSG00000164120|ENST00000296522|HPGD	ENST00000511499.5_1_4:175413109-175416797:-|nuORF	ENST00000511499.5_1_4:175413109-175416797:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	465.775688	929.536823	-0.34175	-0.00015918	-3.4551	-0.0016093	-3.7969	-0.0017685	465.7738506406097	94.403	0.9456	91.935	91.666	92.611	-2.4685	0.092584	-0.00082948	NaN	167.82	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157640			1514	6416	1131	1132							0.06923605922111165
ALNHKVLHY	9	Unmodified	_ALNHKVLHY_					0	0	0		nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2	nc|ENSG00000062598|Q96JJ3-3|ELMO2	nc|ENSG00000062598|Q96JJ3-3|ELMO2	MULTI-MSMS	OvCa9_classI_Rep2	2	547.8087768554688	2	547.808908	1093.60326	-0.63286	-0.00034669	0.48114	0.00026357	-0.15173	-8.3117E-05	547.8089203979869	48.592	1.4896	45.831	45.28	46.769	-2.7603					73	29	4	0	0	0	0.46377	1	3012	3012		45.952	3.5558	1	224700			1515	1277	1132	1133	2120	2120					0.06020557808369631
ALNHKVLHY	9	Unmodified	_ALNHKVLHY_					0	0	0		nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2	nc|ENSG00000062598|Q96JJ3-3|ELMO2	nc|ENSG00000062598|Q96JJ3-3|ELMO2	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.80859375	2	547.808908	1093.60326	-2.0649	-0.0011312	3.1315	0.0017155	1.0666	0.00058429	547.8096133937894	49.074	1.0922	45.932	45.675	46.767	-3.1416					54	20	4	0	0	0	0.46377	1	2751	2751		45.952	5.1738	1	253390			1516	1277	1132	1133	2121	2121					0.06020557808369631
ALNKIKSQN	9	Unmodified	_ALNKIKSQN_					0	0	0			REV__tr|A0A7D6VRU9|A0A7D6VRU9_9CLOTECFtransporterScomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_02365PE=4SV=1	REV__tr|A0A7D6VRU9|A0A7D6VRU9_9CLOTECFtransporterScomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_02365PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.7965393066406	2	508.298373	1014.58219	-0.36002	-0.000183	-0.77909	-0.00039601	-1.1391	-0.00057901	508.29832358903644	24.049	0.53824	24.049	23.748	24.287	0					27	10	4	0	0	0	0.60342	1	391	391		31.53	3.6476	1	221270	+		1517	31448	1133	1134	2122	2122					0.07548547708859132
ALNKLPELL	9	Unmodified	_ALNKLPELL_					0	0	0			REV__RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	REV__RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	505.8156433105469	2	505.815867	1009.61718	-0.25452	-0.00012874	-0.14096	-7.1299E-05	-0.39548	-0.00020004	505.8156837939656	107.58	1.5169	107.27	106.97	108.49	-0.30836					48	30	2	0	0	0	0.21231	3	10044	10044;10050;10062		74.255	7.1816	1	319880	+		1518	21802	1134	1135	2123;2124;2125	2123					0.11275790516799589
ALNKLPELL	9	Unmodified	_ALNKLPELL_					0	0	0			REV__RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	REV__RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MSMS	OvCa9_classI_Rep4_	4	505.8164978027344	2	505.815867	1009.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.95	1	107.23	106.73	107.73	-1.7256								0	0	0	0.043559	1	9987	9987		79.451	5.196	1		+		1519	21802	1134	1135	2126	2126					0.11275790516799589
ALNKLPELL	9	Unmodified	_ALNKLPELL_					0	0	0			REV__RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	REV__RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MSMS	OvCa9_classI_Rep4_	4	505.81536865234375	2	505.815867	1009.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.16	1	107.44	106.94	107.94	-1.7256								0	0	0	0.16872	1	10013	10013		54.776	12.38	1		+		1520	21802	1134	1135	2127	2127					0.11275790516799589
ALNKTKIKP	9	Unmodified	_ALNKTKIKP_					0	0	0		ENSG00000151176|ENST00000280800|PLBD2;nc|ENSG00000151176|Q8NHP8-2|PLBD2;PLBD2|p.D510Afs*24|1|0.06|ENSG00000151176|chr12:113387833-113387833|A/-|frameshift_variant	ENSG00000151176|ENST00000280800|PLBD2	ENSG00000151176|ENST00000280800|PLBD2	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.27252197265625	2	506.829309	1011.64407	1.4648	0.00074241	-1.8691	-0.00094733	-0.40432	-0.00020492	506.82829718817567	89.711	1.5338	88.409	88.037	89.571	-1.302					70	30	4	0	0	0	0.027462	1	7860	7860		16.473	0	1	194900			1521	5539	1135	1136	2128	2128					0.1387089912797137
ALNNFGYSMGF	11	Unmodified	_ALNNFGYSMGF_					0	0	0			REV__tr|A0A553SH92|A0A553SH92_NIACIProteintranslocasesubunitSecYOS=NialliacirculansOX=1397GN=secYPE=3SV=1	REV__tr|A0A553SH92|A0A553SH92_NIACIProteintranslocasesubunitSecYOS=NialliacirculansOX=1397GN=secYPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	407.9093322753906	3	407.518341	1219.53319	0.64723	0.00026376	-1.1627	-0.00047382	-0.51547	-0.00021006	407.51783639109607	75.111	0.82942	73.14	72.692	73.521	-1.9711					26	15	2	0	0	0	0.025995	1	6193	6193		17.833	6.8349	1	22236	+		1522	29784	1136	1137	2129	2129					-0.06779108642422216
ALNPITHII	9	Unmodified	_ALNPITHII_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	OvCa9_classI_Rep3	3	496.2995910644531	2	496.300384	990.586216	1.2461	0.00061845	-1.3256	-0.00065787	-0.079436	-3.9424E-05	496.29955522437075	123.03	1.3483	121.99	121.68	123.03	-1.0377					64	25	3	0	0	0	0.55588	1	9503	9503		37.159	1.5408	1	228980	+		1523	28906	1137	1138	2130	2130					0.0905463720255284
ALNPYKSI	8	Unmodified	_ALNPYKSI_					0	0	0		tr|A0A7D6ZX66|A0A7D6ZX66_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21875PE=3SV=1	tr|A0A7D6ZX66|A0A7D6ZX66_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21875PE=3SV=1	tr|A0A7D6ZX66|A0A7D6ZX66_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21875PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	452.7684020996094	2	453.258185	904.501818	0.41943	0.00019011	0.7576	0.00034339	1.177	0.0005335	453.25838015384255	70.77	0.53954	70.77	70.528	71.068	0					22	13	2	0	0	0	0.028476	1	6803	6803		31.955	1.4512	1	744300			1524	35865	1138	1139	2131	2131					0.04574686385797122
ALNRISEVC	9	Unmodified	_ALNRISEVC_					0	0	0			REV__ENSG00000118193|ENST00000367350|KIF14	REV__ENSG00000118193|ENST00000367350|KIF14	MULTI-MSMS	OvCa9_classI_Rep3	3	502.7630615234375	2	502.763309	1003.51206	1.2962	0.00065166	-1.3666	-0.00068706	-0.070404	-3.5396E-05	502.76247959947113	61.457	2.958	58.389	57.803	60.761	-3.0685					131	69	3	0	0	0	0.59983	1	2137	2137		31.955	1.4512	1	112640	+		1525	18381	1139	1140	2132	2132					0.01044926048734851
ALNTHLSR	8	Unmodified	_ALNTHLSR_					0	0	0		nc|ENSG00000257335|O43451-1|MGAM;MGAM|p.P1829Sfs*7|1|0.02|ENSG00000257335|chr7:142103427-142103428|-/AG|frameshift_variant;ENSG00000257335|ENST00000475668|MGAM	nc|ENSG00000257335|O43451-1|MGAM	nc|ENSG00000257335|O43451-1|MGAM	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.7722473144531	2	456.256508	910.498464	-0.74071	-0.00033796	0.49959	0.00022794	-0.24113	-0.00011002	456.256649386395	41.893	0.61581	38.912	38.696	39.312	-2.9804					19	11	3	0	0	0	0.028476	1	1905	1905		38.806	10.924	1	32313			1526	9471	1140	1141	2133	2133					0.03963436331810044
ALNTKGQSL	9	Unmodified	_ALNTKGQSL_					0	0	0		ENST00000491746.5_1_15:42134104-42137535:+|nuORF;nc|ENSG00000243708|P0C869-4|PLA2G4B;ENSG00000243708|ENST00000458483|PLA2G4B;nc|ENSG00000243708|P0C869-8|PLA2G4B;nc|ENSG00000243708|P0C869-7|PLA2G4B;nc|ENSG00000243708|P0C869-6|PLA2G4B	ENST00000491746.5_1_15:42134104-42137535:+|nuORF	ENST00000491746.5_1_15:42134104-42137535:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	466.2641906738281	2	466.263999	930.513445	-0.47853	-0.00022312	-0.28919	-0.00013484	-0.76772	-0.00035796	466.26368053004296	59.63	1.197	56.85	56.294	57.491	-2.7801					45	22	3	0	0	0	0.21231	1	4367	4367		74.255	0.28031	1	501960			1527	9380	1141	1142	2134	2134					0.04540883409140406
ALPAARLSL	9	Unmodified	_ALPAARLSL_					0	0	0		OSR1|p.F44Cfs*70|1|0.08|ENSG00000143867|chr2:19353662-19353675|GTGCAACGCGCTGA/-|frameshift_variant	OSR1|p.F44Cfs*70|1|0.08|ENSG00000143867|chr2:19353662-19353675|GTGCAACGCGCTGA/-|frameshift_variant	OSR1|p.F44Cfs*70|1|0.08|ENSG00000143867|chr2:19353662-19353675|GTGCAACGCGCTGA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.28741455078125	2	456.287277	910.560001	-0.12853	-5.8645E-05	-0.036846	-1.6813E-05	-0.16537	-7.5457E-05	456.2871330314648	94.24	1.2331	91.772	91.478	92.711	-2.4685					44	24	2	0	0	0	0.16524	1	8238	8238		82.305	2.854	1	246510			1528	15468	1142	1143	2135	2135					0.10114368031076992
ALPAARLSL	9	Unmodified	_ALPAARLSL_					0	0	0		OSR1|p.F44Cfs*70|1|0.08|ENSG00000143867|chr2:19353662-19353675|GTGCAACGCGCTGA/-|frameshift_variant	OSR1|p.F44Cfs*70|1|0.08|ENSG00000143867|chr2:19353662-19353675|GTGCAACGCGCTGA/-|frameshift_variant	OSR1|p.F44Cfs*70|1|0.08|ENSG00000143867|chr2:19353662-19353675|GTGCAACGCGCTGA/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	456.287277	910.560001	1.3446	0.00061353	-1.3746	-0.0006272	-0.029974	-1.3677E-05	456.2865491965057	92.795	1.9184	91.627	90.762	92.68	-1.168	-0.039585	-0.0010332	NaN	82.305	83	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242450			1529	15468	1142	1143							0.10114368031076992
ALPAARLSL	9	Unmodified	_ALPAARLSL_					0	0	0		OSR1|p.F44Cfs*70|1|0.08|ENSG00000143867|chr2:19353662-19353675|GTGCAACGCGCTGA/-|frameshift_variant	OSR1|p.F44Cfs*70|1|0.08|ENSG00000143867|chr2:19353662-19353675|GTGCAACGCGCTGA/-|frameshift_variant	OSR1|p.F44Cfs*70|1|0.08|ENSG00000143867|chr2:19353662-19353675|GTGCAACGCGCTGA/-|frameshift_variant	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	456.287277	910.560001	-1.1127	-0.0005077	0.9728	0.00044388	-0.13988	-6.3825E-05	456.28760351024965	93.563	1.8059	91.601	90.79	92.595	-1.9617	-0.065626	0.001109	NaN	82.305	94	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	289620			1530	15468	1142	1143							0.10114368031076992
ALPAFTNEF	9	Unmodified	_ALPAFTNEF_					0	0	0		ENSG00000274252|ENST00000619998|GGTLC3;nc|ENSG00000133475|P36268-2|GGT2P;nc|ENSG00000133475|P36268|GGT2P;nc|ENSG00000133475|P36268-3|GGT2P	ENSG00000274252|ENST00000619998|GGTLC3	ENSG00000274252|ENST00000619998|GGTLC3	MULTI-SECPEP	OvCa9_classI_Rep2	2	504.78948974609375	2	505.2531	1008.49165	-1.4564	-0.00073583	-2.9492	-0.0014901	-4.4056	-0.0022259	505.2514868042238	55.014	1.1457	52.2	51.872	53.017	-2.8139					39	22	3	0	0	0	0.027441	1	3775	3775		55.504	33.544	1	55440			1531	9562	1143	1144	2136	2136					-0.012259213394372637
ALPAGAGLALR	11	Unmodified	_ALPAGAGLALR_					0	0	0			REV__ENST00000584528.5_1_17:56603677-56604185:-|nuORF	REV__ENST00000584528.5_1_17:56603677-56604185:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.8086853027344	2	505.311284	1008.60801	-0.13843	-6.9948E-05	-0.022982	-1.1613E-05	-0.16141	-8.1561E-05	505.31109589587135	72.139	1.8278	69.632	69.329	71.157	-2.5071					61	34	4	0	0	0	0.025444	1	5923	5923		40.778	16.575	1	329130	+		1532	27845	1144	1145	2137	2137					0.10405441951127159
ALPAKKRR	8	Unmodified	_ALPAKKRR_					0	0	0		MYO7B|p.G920Afs*6|1|0.4|ENSG00000169994|chr2:127608822-127608822|G/-|frameshift_variant;nc|ENSG00000169994|Q6PIF6-2|MYO7B;MYO7B|p.A2010Pfs*5|1|0.38|ENSG00000169994|chr2:127636307-127636307|G/-|frameshift_variant;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B	MYO7B|p.G920Afs*6|1|0.4|ENSG00000169994|chr2:127608822-127608822|G/-|frameshift_variant	MYO7B|p.G920Afs*6|1|0.4|ENSG00000169994|chr2:127608822-127608822|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.2955627441406	2	470.314161	938.613768	0.40907	0.00019239	-3.6558	-0.0017194	-3.2467	-0.001527	470.31226334279023	21.634	0.50614	20.295	20.068	20.574	-1.3386					11	9	2	0	0	0	0.028476	1	168	168		8.2313	0	1	20948			1533	7062	1145	1146	2138	2138					0.14200585253456666
ALPALVRPPA	10	Unmodified	_ALPALVRPPA_					0	0	0		ENSG00000151789|ENST00000281523|ZNF385D	ENSG00000151789|ENST00000281523|ZNF385D	ENSG00000151789|ENST00000281523|ZNF385D	MULTI-MSMS	OvCa9_classI_Rep3	3	502.813720703125	2	502.816202	1003.61785	-5.7843	-0.0029085	1.4056	0.00070674	-4.3788	-0.0022017	502.8168335130942	153.97	1.772	152.96	152.62	154.39	-1.0076					110	37	4	0	0	0	0.69986	1	13227	13227		30.504	5.0535	1	860080			1534	5583	1146	1147	2139	2139					0.11618629956501536
ALPARYLK	8	Unmodified	_ALPARYLK_					0	0	0			REV__tr|A0A553SFX2|A0A553SFX2_NIACIYheC/YheDfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09645PE=4SV=1	REV__tr|A0A553SFX2|A0A553SFX2_NIACIYheC/YheDfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09645PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	466.95245361328125	2	466.28982	930.565087	-1.0466	-0.00048804	-3.3451	-0.0015598	-4.3917	-0.0020478	466.28814815513704	60.708	1.3172	57.938	57.606	58.924	-2.7702					54	24	3	0	0	0	0.028476	1	4591	4591		25.45	0	1	129020	+		1535	29633	1147	1148	2140	2140					0.09702671893694514
ALPARYLK	8	Unmodified	_ALPARYLK_					0	0	0			REV__tr|A0A553SFX2|A0A553SFX2_NIACIYheC/YheDfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09645PE=4SV=1	REV__tr|A0A553SFX2|A0A553SFX2_NIACIYheC/YheDfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09645PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	466.28982	930.565087	0.15269	7.1199E-05	-4.7718	-0.002225	-4.6191	-0.0021539	466.28750423276733	61.555	1.394	58.097	57.816	59.21	-3.4577	0.079528	-0.00082874	NaN	25.45	51	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202730	+		1536	29633	1147	1148							0.09702671893694514
ALPAVIDL	8	Unmodified	_ALPAVIDL_					0	0	0		ENST00000560039.1_1_15:23027862-23034200:-|nuORF;ENST00000337451.7_1_15:23027862-23033379:-|nuORF	ENST00000560039.1_1_15:23027862-23034200:-|nuORF	ENST00000560039.1_1_15:23027862-23034200:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	406.248291015625	2	406.249829	810.485105	0.12737	5.1745E-05	-3.126	-0.00127	-2.9987	-0.0012182	406.2484453732125	140.19	2.0181	139.96	139.4	141.42	-0.22697					109	40	4	0	0	0	0.74971	2	14019	14019;14043		26.796	2.5934	1	304300			1537	10525	1148	1149	2141;2142	2141					0.07228185499855044
ALPCQPRTY	9	Unmodified	_ALPCQPRTY_					0	0	0			REV__ENST00000372072.7_1_X:109418491-109418644:+|nuORF	REV__ENST00000372072.7_1_X:109418491-109418644:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	524.765625	2	524.765852	1047.51715	0.20193	0.00010597	0.020811	1.0921E-05	0.22274	0.00011689	524.7656821211727	129.4	1.9283	128.29	127.55	129.48	-1.1121					82	38	4	0	0	0	0.60342	1	10213	10213		31.53	6.0796	1	121170	+		1538	24996	1149	1150	2143	2143					-0.004707700886456223
ALPCVLRVPR	10	Unmodified	_ALPCVLRVPR_					0	0	0		ENST00000382952.7_2_4:1205816-1205999:-|nuORF	ENST00000382952.7_2_4:1205816-1205999:-|nuORF	ENST00000382952.7_2_4:1205816-1205999:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3452758789062	2	562.342061	1122.66957	2.5554	0.001437	-0.2194	-0.00012338	2.336	0.0013136	562.341833951132	139.43	3.4203	137.93	136.47	139.89	-1.4952					166	69	3	0	0	0	0.66721	1	13603	13603		34.173	1.3601	1	141360			1539	11183	1150	1151	2144	2144					0.11314050378769025
ALPDQGIAKA	10	Unmodified	_ALPDQGIAKA_					0	0	0		ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	492.2808837890625	2	492.279649	982.544745	-0.021151	-1.0412E-05	-0.23772	-0.00011702	-0.25887	-0.00012744	492.279357945395	62.655	0.7622	62.655	62.378	63.14	0					33	18	3	0	0	0	0.50873	1	5593	5593		53.089	17.888	1	2217800			1540	1820	1151	1152	2145	2145					0.052774564432297666
ALPELPLAIKF	11	Unmodified	_ALPELPLAIKF_					0	0	0		ENST00000406671.1_1_6:127683994-127684144:+|nuORF	ENST00000406671.1_1_6:127683994-127684144:+|nuORF	ENST00000406671.1_1_6:127683994-127684144:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	606.369384765625	2	606.373549	1210.73255	-2.264	-0.0013728	-4.3442	-0.0026342	-6.6082	-0.0040071	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.71789	1	12603	12603		23.523	0.48021	1	205770			1541	11485	1152	1153	2146	2146					0.13560894647775967
ALPFNRKRLP	10	Unmodified	_ALPFNRKRLP_					0	0	0		ENST00000373991.3_1_20:34542249-34542378:-|nuORF	ENST00000373991.3_1_20:34542249-34542378:-|nuORF	ENST00000373991.3_1_20:34542249-34542378:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3689575195312	2	606.372207	1210.72986	-2.0217	-0.0012259	-2.3109	-0.0014013	-4.3326	-0.0026272	606.3706888805716	149.57	2.6994	148.14	147.52	150.22	-1.4344					165	58	4	0	0	0	0.76627	1	14786	14786		23.042	0.46283	1	304910			1542	11021	1153	1154	2147	2147					0.13292484033490837
ALPFWNKE	8	Unmodified	_ALPFWNKE_					0	0	0		ENST00000552554.1_1_12:96066451-96066841:+|nuORF	ENST00000552554.1_1_12:96066451-96066841:+|nuORF	ENST00000552554.1_1_12:96066451-96066841:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	502.7633056640625	2	502.763635	1003.51272	1.2962	0.00065166	-2.0149	-0.001013	-0.71875	-0.00036136	502.76247959947113	61.457	2.958	58.389	57.803	60.761	-3.0685					131	69	3	0	0	0	0.65582	1	2156	2156		52.299	4.6418	1	112640			1543	13613	1154	1155	2148	2148					0.01110088760083272
ALPGLIAQAI	10	Unmodified	_ALPGLIAQAI_					0	0	0		ENSG00000105642|ENST00000684775|KCNN1;nc|ENSG00000105642|Q92952-2|KCNN1	ENSG00000105642|ENST00000684775|KCNN1	ENSG00000105642|ENST00000684775|KCNN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	483.8018493652344	2	483.80276	965.590967	-1.4011	-0.00067785	1.3728	0.00066416	-0.028299	-1.3691E-05	483.80328713273485	119.78	1.049	118.44	118.19	119.24	-1.3444					43	19	4	0	0	0	0.56767	1	11280	11280		45.952	8.1404	1	133180			1544	2479	1155	1156	2149	2149					0.10679521345332432
ALPGLIAQAI	10	Unmodified	_ALPGLIAQAI_					0	0	0		ENSG00000105642|ENST00000684775|KCNN1;nc|ENSG00000105642|Q92952-2|KCNN1	ENSG00000105642|ENST00000684775|KCNN1	ENSG00000105642|ENST00000684775|KCNN1	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	483.80276	965.590967	-1.6747	-0.00081021	1.7588	0.00085092	0.084144	4.0709E-05	483.8034927033824	118.88	1.0877	118.73	118.33	119.42	-0.14755	0.17565	0.00059606	NaN	45.952	50	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102160			1545	2479	1155	1156							0.10679521345332432
ALPGLIAQAI	10	Unmodified	_ALPGLIAQAI_					0	0	0		ENSG00000105642|ENST00000684775|KCNN1;nc|ENSG00000105642|Q92952-2|KCNN1	ENSG00000105642|ENST00000684775|KCNN1	ENSG00000105642|ENST00000684775|KCNN1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	483.80276	965.590967	0.40305	0.00019499	-0.42063	-0.0002035	-0.017588	-8.5091E-06	483.8023519801915	119.53	0.9867	118.51	118.23	119.22	-1.0271	-0.053486	-0.0015128	NaN	45.952	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179710			1546	2479	1155	1156							0.10679521345332432
ALPIMRSLV	9	Unmodified	_ALPIMRSLV_					0	0	0		nc|ENSG00000180071|Q8IVF6-2|ANKRD18A	nc|ENSG00000180071|Q8IVF6-2|ANKRD18A	nc|ENSG00000180071|Q8IVF6-2|ANKRD18A	MULTI-MSMS	OvCa9_classI_Rep2	2	500.3064880371094	2	500.304613	998.594672	1.8295	0.00091529	1.8159	0.00090851	3.6454	0.0018238	500.3053685545666	27.721	1.1711	25.012	24.828	25.999	-2.7097					57	25	3	0	0	0	0.70177	1	576	576		17.365	7.1802	1	318060			1547	15204	1156	1157	2150	2150					0.09531867847533704
ALPKSARLLP	10	Unmodified	_ALPKSARLLP_					0	0	0			REV__ENST00000476365.2_1_20:30777007-30778297:-|nuORF	REV__ENST00000476365.2_1_20:30777007-30778297:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	533.3406982421875	2	533.342584	1064.67061	-5.4005	-0.0028803	1.293	0.00068962	-4.1075	-0.0021907	533.3431631989303	156.44	1.0857	156.21	155.92	157	-0.22696					71	26	4	0	0	0	0.74374	1	15950	15950		25.574	3.6142	1	260540	+		1548	26370	1157	1158	2151	2151					0.1408658801931324
ALPKSARLLP	10	Unmodified	_ALPKSARLLP_					0	0	0			REV__ENST00000476365.2_1_20:30777007-30778297:-|nuORF	REV__ENST00000476365.2_1_20:30777007-30778297:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	533.3390502929688	2	533.342584	1064.67061	-5.4486	-0.002906	1.332	0.00071043	-4.1166	-0.0021955	533.3431726379797	156.49	1.098	155.32	155.02	156.12	-1.1707					66	21	4	0	0	0	0.65434	3	13505	13453;13458;13505		35.618	10.168	1	385900	+		1549	26370	1157	1158	2152;2153;2154	2154					0.1408658801931324
ALPLGHKH	8	Unmodified	_ALPLGHKH_					0	0	0			REV__tr|A0A553SJ54|A0A553SJ54_NIACIRibonucleaseROS=NialliacirculansOX=1397GN=rnrPE=3SV=1	REV__tr|A0A553SJ54|A0A553SJ54_NIACIRibonucleaseROS=NialliacirculansOX=1397GN=rnrPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	436.7586975097656	2	436.758687	871.502821	0.032639	1.4255E-05	0.1088	4.7517E-05	0.14143	6.1773E-05	436.75857036749125	26.371	0.50098	26.371	26.092	26.593	0					21	9	3	0	0	0	0.74679	1	683	683		28.254	1.4582	1	81556	+		1550	29966	1158	1159	2155	2155					0.06192945545365092
ALPLKTEHK	9	Unmodified	_ALPLKTEHK_					0	0	0		nc|ENSG00000068971|Q15173-2|PPP2R5B;ENSG00000068971|ENST00000164133|PPP2R5B	nc|ENSG00000068971|Q15173-2|PPP2R5B	nc|ENSG00000068971|Q15173-2|PPP2R5B	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.8125	2	518.811116	1035.60768	-0.61865	-0.00032096	0.22979	0.00011922	-0.38886	-0.00020175	518.8111243295159	98.94	1.391	96.614	96.177	97.568	-2.3253					63	20	4	0	0	0	0.22961	1	8801	8801		71.296	2.5089	1	598110			1551	1402	1159	1160	2156	2156					0.09130022231261137
ALPRARASA	9	Unmodified	_ALPRARASA_					0	0	0		sp|Q6SW66|UL76_HCMVMProteinUL76OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL76PE=2SV=1;sp|P16725|UL76_HCMVAProteinUL76OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL76PE=2SV=1	sp|Q6SW66|UL76_HCMVMProteinUL76OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL76PE=2SV=1	sp|Q6SW66|UL76_HCMVMProteinUL76OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL76PE=2SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	456.7723083496094	2	456.772326	911.530098	-0.55209	-0.00025218	0.40157	0.00018343	-0.15052	-6.8753E-05	456.77237766888294	142.31	1.8774	142.08	141.37	143.25	-0.22697					97	37	4	0	0	0	0.62352	1	14294	14294		29.15	3.6994	1	225920			1552	32890	1160	1161	2157	2157					0.07079429085740685
ALPRPPPAK	9	Unmodified	_ALPRPPPAK_					0	0	0		ENST00000549319.2_1_1:221053686-221053788:+|nuORF	ENST00000549319.2_1_1:221053686-221053788:+|nuORF	ENST00000549319.2_1_1:221053686-221053788:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	473.7926025390625	2	473.795269	945.575986	-1.4006	-0.0006636	-2.8897	-0.0013691	-4.2903	-0.0020327	473.79377720504266	140.59	1.376	139.55	139.19	140.56	-1.0339					56	27	3	0	0	0	0.70177	1	11582	11582		17.365	2.7009	1	61465			1553	13570	1161	1162	2158	2158					0.10102074267979333
ALPRRMTGS	9	Unmodified	_ALPRRMTGS_					0	0	0			REV__ENST00000228506.7_1_12:121131935-121132034:+|nuORF	REV__ENST00000228506.7_1_12:121131935-121132034:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	494.7715759277344	2	494.771468	987.528384	-1.8549	-0.00091774	1.911	0.00094552	0.05615	2.7781E-05	494.7721908051854	35.478	0.89558	32.768	32.454	33.35	-2.7097					38	17	3	0	0	0	0.62352	1	1421	1421		29.15	3.6994	1	88225	+		1554	23775	1162	1163	2159	2159					0.034120520055012094
ALPRRTVDF	9	Unmodified	_ALPRRTVDF_					0	0	0		ENST00000515045.1_1_5:177059676-177099177:-|nuORF;SIMC1|p.D493Afs*32|1|0.28|ENSG00000170085|chr5:176295133-176295133|A/-|frameshift_variant;ENSG00000170085|ENST00000429602|SIMC1	ENST00000515045.1_1_5:177059676-177099177:-|nuORF	ENST00000515045.1_1_5:177059676-177099177:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.7833862304688	2	537.806365	1073.59818	-0.47882	-0.00025751	-1.4695	-0.0007903	-1.9483	-0.0010478	537.8054258173084	59.914	1.3823	56.484	56.062	57.444	-3.43					67	27	3	0	0	0	0.027462	1	3988	3988		30.504	11.144	1	175130			1555	7071	1163	1164	2160	2160					0.0643225394574074
ALPRRTVDF	9	Unmodified	_ALPRRTVDF_					0	0	0		ENST00000515045.1_1_5:177059676-177099177:-|nuORF;SIMC1|p.D493Afs*32|1|0.28|ENSG00000170085|chr5:176295133-176295133|A/-|frameshift_variant;ENSG00000170085|ENST00000429602|SIMC1	ENST00000515045.1_1_5:177059676-177099177:-|nuORF	ENST00000515045.1_1_5:177059676-177099177:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	537.806365	1073.59818	-1.1251	-0.00060508	-0.97496	-0.00052434	-2.1001	-0.0011294	537.8057120553705	59.311	0.98698	56.531	56.189	57.176	-2.7801	0.023669	0.00026261	NaN	10.866	34	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54342			1556	7071	1163	1164							0.0643225394574074
ALPSAQGRKKR	11	Unmodified	_ALPSAQGRKKR_					0	0	0			REV__nc|ENSG00000118513|P10242-8|MYB	REV__nc|ENSG00000118513|P10242-8|MYB	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3692626953125	2	606.370195	1210.72584	-3.14	-0.001904	2.1543	0.0013063	-0.98567	-0.00059768	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.71789	1	15016	15016		23.523	2.5758	1	257720	+		1557	18403	1164	1165	2161	2161					0.12890394539772387
ALPSKLPTF	9	Unmodified	_ALPSKLPTF_					0	0	0		ENSG00000121060|ENST00000316881|TRIM25;TRIM25|p.V396F|1|0.05|ENSG00000121060|chr17:56895599-56895599|C/A|missense_variant;ENST00000572021.5_1_17:54969063-54989474:-|nuORF	ENSG00000121060|ENST00000316881|TRIM25	ENSG00000121060|ENST00000316881|TRIM25	MULTI-MSMS	OvCa99_classI_Rep5	1	487.29058837890625	2	487.289485	972.564418	0.2912	0.0001419	2.2265	0.001085	2.5177	0.0012269	487.29018711585417	101.87	1.6129	101.87	101.06	102.68	0					91	37	5	0	0	0	0.2422	1	11328	11328		69.628	10.846	1	6372700			1558	3468	1165	1166	2162	2162					0.0770383245398989
ALPSRILLWK	10	Unmodified	_ALPSRILLWK_					0	0	0		ENSG00000162576|ENST00000309212|MXRA8;nc|ENSG00000162576|Q9BRK3-4|MXRA8;nc|ENSG00000162576|Q9BRK3-2|MXRA8	ENSG00000162576|ENST00000309212|MXRA8	ENSG00000162576|ENST00000309212|MXRA8	MULTI-MSMS	OvCa9_classI_Rep2	2	598.87939453125	2	598.879333	1195.74411	-1.6335	-0.00097829	1.1802	0.00070681	-0.45332	-0.00027148	598.8799113776662	101.26	1.3872	100.5	100.22	101.61	-0.76401					69	27	4	0	0	0	0.71173	1	9301	9301		29.17	3.596	1	300370			1559	6195	1166	1167	2163	2163					0.15407136461794835
ALPSRILLWK	10	Unmodified	_ALPSRILLWK_					0	0	0		ENSG00000162576|ENST00000309212|MXRA8;nc|ENSG00000162576|Q9BRK3-4|MXRA8;nc|ENSG00000162576|Q9BRK3-2|MXRA8	ENSG00000162576|ENST00000309212|MXRA8	ENSG00000162576|ENST00000309212|MXRA8	MULTI-MSMS	OvCa9_classI_Rep4_	4	598.8807373046875	2	598.879333	1195.74411	0.24915	0.00014921	-0.13843	-8.2903E-05	0.11072	6.6309E-05	598.8791034488352	103.06	1.3594	100.86	100.52	101.88	-2.1994					64	25	4	0	0	0	0.62712	1	9298	9298		38.754	0.039523	1	298830			1560	6195	1166	1167	2164	2164					0.15407136461794835
ALPSRILLWK	10	Unmodified	_ALPSRILLWK_					0	0	0		ENSG00000162576|ENST00000309212|MXRA8;nc|ENSG00000162576|Q9BRK3-4|MXRA8;nc|ENSG00000162576|Q9BRK3-2|MXRA8	ENSG00000162576|ENST00000309212|MXRA8	ENSG00000162576|ENST00000309212|MXRA8	MULTI-MATCH	OvCa9_classI_Rep3	3		2	598.879333	1195.74411	1.0422	0.00062413	-1.29	-0.00077255	-0.24784	-0.00014843	598.8785005421831	102.35	1.5677	100.83	100.48	102.05	-1.5211	0.10127	-0.0016217	NaN	38.754	68	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	317880			1561	6195	1166	1167							0.15407136461794835
ALPTYARSF	9	Unmodified	_ALPTYARSF_					0	0	0		ENST00000470223.1_1_1:27661789-27661954:+|nuORF	ENST00000470223.1_1_1:27661789-27661954:+|nuORF	ENST00000470223.1_1_1:27661789-27661954:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.62158203125	2	513.274367	1024.53418	0.78281	0.0004018	3.3991	0.0017446	4.1819	0.0021464	513.2762806134294	65.335	1.0795	62.611	61.864	62.943	-2.7245					29	20	2	0	0	0	0.027462	1	5034	5034		39.253	0	1	23177			1562	12359	1167	1168	2165	2165					0.02289473788800933
ALPVLKAK	8	Unmodified	_ALPVLKAK_					0	0	0		ENST00000296721.8_1_5:148719909-148720053:+|nuORF	ENST00000296721.8_1_5:148719909-148720053:+|nuORF	ENST00000296721.8_1_5:148719909-148720053:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	420.24163818359375	2	420.289288	838.564024	-0.15128	-6.3583E-05	0.37656	0.00015827	0.22528	9.4683E-05	420.289293524388	55.114	0.92069	55.114	54.761	55.682	0					29	21	2	0	0	0	0.028476	1	4543	4543		21.702	1.2205	1	258450			1563	10143	1168	1169	2166	2166					0.13828457524789428
ALPVLVKGPL	10	Unmodified	_ALPVLVKGPL_					0	0	0			REV__ENSG00000079432|ENST00000681038|CIC	REV__ENSG00000079432|ENST00000681038|CIC	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.3536682128906	2	503.836603	1005.65865	1.9593	0.00098719	-0.29803	-0.00015016	1.6613	0.00083703	503.83620161244073	136.57	0.47806	136.57	136.39	136.87	0					16	9	2	0	0	0	0.026871	1	15953	15953		29.15	0	1	40566	+		1564	17043	1169	1170	2167	2167					0.15604971276127344
ALPVSLLLPA	10	Unmodified	_ALPVSLLLPA_					0	0	0		ENST00000331163.10_1_22:39631853-39640539:-|nuORF	ENST00000331163.10_1_22:39631853-39640539:-|nuORF	ENST00000331163.10_1_22:39631853-39640539:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.2601013183594	2	497.320786	992.627018	0.29037	0.00014441	2.5253	0.0012559	2.8157	0.0014003	497.32181796898703	114.74	0.4667	114.74	114.6	115.07	0					15	9	2	0	0	0	0.026892	1	13122	13122		18.324	0	1	105180			1565	10445	1170	1171	2168	2168					0.13040978522190017
ALPYFWEHF	9	Unmodified	_ALPYFWEHF_					0	0	0		RPL27A-EEF1G|1|fusion;ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	RPL27A-EEF1G|1|fusion	RPL27A-EEF1G|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	605.2920532226562	2	605.290017	1208.56548	2.153	0.0013032	0.10246	6.2018E-05	2.2555	0.0013652	605.290098669334	136.46	0.94859	136.46	136.07	137.01	0					45	19	4	0	0	0	0.55588	1	15905	15905		37.159	1.5408	1	393340			1566	32789	1171	1172	2169	2169					-0.03045953177092997
ALQAKYELL	9	Unmodified	_ALQAKYELL_					0	0	0		tr|A0A553SM82|A0A553SM82_NIACISugar-bindingtranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22060PE=3SV=1	tr|A0A553SM82|A0A553SM82_NIACISugar-bindingtranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22060PE=3SV=1	tr|A0A553SM82|A0A553SM82_NIACISugar-bindingtranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22060PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.8046264648438	2	524.8055	1047.59645	-1.2668	-0.00066484	0.27215	0.00014283	-0.99469	-0.00052202	524.8056155005146	93.196	3.165	90.689	90.412	93.577	-2.5072					175	64	5	0	0	0	0.55011	1	8255	8255		37.812	0.65241	1	7764100			1567	33809	1172	1173	2170	2170					0.07455200137133033
ALQDSLAIL	9	Unmodified	_ALQDSLAIL_					0	0	0			REV__tr|A0A553SKK5|A0A553SKK5_NIACItRNA(N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferaseOS=NialliacirculansOX=1397GN=mtaBPE=4SV=1	REV__tr|A0A553SKK5|A0A553SKK5_NIACItRNA(N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferaseOS=NialliacirculansOX=1397GN=mtaBPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	472.2951354980469	2	472.276575	942.538597	-0.059433	-2.8069E-05	-4.4695	-0.0021108	-4.5289	-0.0021389	472.2760927427317	95.511	1.1441	93.616	92.864	94.008	-1.8956					33	22	2	0	0	0	0.027017	1	6198	6198		104.75	13.97	1	92278	+		1568	30135	1173	1174	2171	2171					0.06502938211713172
ALQEFGPISY	10	Unmodified	_ALQEFGPISY_					0	0	0		ENSG00000104824|ENST00000221419|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF	ENSG00000104824|ENST00000221419|HNRNPL	ENSG00000104824|ENST00000221419|HNRNPL	MULTI-MSMS	OvCa99_classI_Rep5	1	562.7857666015625	2	562.784764	1123.55498	1.5997	0.00090027	0.1821	0.00010248	1.7818	0.0010028	562.7848227189371	124.49	1.0525	124.49	124.19	125.25	0					77	23	6	0	0	0	3.6442E-07	2	14371	14371;14397		209.19	116	1	7931500			1569	2394	1174	1175	2172;2173	2172					-0.0018598062217733968
ALQEKVQAV	9	Unmodified	_ALQEKVQAV_					0	0	0		ENSG00000165660|ENST00000298492|ABRAXAS2	ENSG00000165660|ENST00000298492|ABRAXAS2	ENSG00000165660|ENST00000298492|ABRAXAS2	MULTI-MSMS	OvCa99_classI_Rep5	1	493.2890319824219	2	493.287474	984.560395	-0.033033	-1.6295E-05	-0.096961	-4.783E-05	-0.12999	-6.4125E-05	493.2869723141332	57.331	0.5946	57.331	57.138	57.732	0					20	13	2	0	0	0	0.1243	1	4813	4813		90.601	23.107	1	1113500			1570	6586	1175	1176	2174	2174					0.06749742960289495
ALQELKKKI	9	Unmodified	_ALQELKKKI_					0	0	0		ENSG00000116205|ENST00000234827|TCEANC2	ENSG00000116205|ENST00000234827|TCEANC2	ENSG00000116205|ENST00000234827|TCEANC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.7051391601562	2	535.850242	1069.68593	0.085073	4.5587E-05	-0.51871	-0.00027795	-0.43364	-0.00023237	535.8497791238206	32.627	0.29336	32.627	32.503	32.796	0					9	5	2	0	0	0	0.027455	1	1426	1426		42.396	0	1	44716			1571	3162	1176	1177	2175	2175					0.15387454816504942
ALQEMVHQV	9	Unmodified	_ALQEMVHQV_					0	0	0		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-MSMS	OvCa99_classI_Rep5	1	527.7741088867188	2	527.771134	1053.52771	1.335	0.00070458	0.57431	0.0003031	1.9093	0.0010077	527.7713420700007	74.737	0.96639	74.737	74.441	75.407	0					64	23	4	0	0	0	0.084918	1	7392	7392		101.25	37.719	1	9423100			1572	2858	1177	1178	2176	2176					0.003092125657985889
ALQFKQKF	8	Unmodified	_ALQFKQKF_					0	0	0			REV__ENST00000401042.7_1_1:67425382-67436550:+|nuORF	REV__ENST00000401042.7_1_1:67425382-67436550:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.7677917480469	2	505.295102	1008.57565	-0.5627	-0.00028433	-4.1805	-0.0021124	-4.7432	-0.0023967	505.2929704105479	58.448	0.8018	55.056	54.802	55.604	-3.392					27	15	2	0	0	0	0.028476	1	3895	3895		71.378	28.903	1	51848	+		1573	25408	1178	1179	2177	2177					0.07170654548144739
ALQFKQKF	8	Unmodified	_ALQFKQKF_					0	0	0			REV__ENST00000401042.7_1_1:67425382-67436550:+|nuORF	REV__ENST00000401042.7_1_1:67425382-67436550:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	505.295102	1008.57565	-0.97527	-0.0004928	-3.3367	-0.001686	-4.3119	-0.0021788	505.29314806088377	57.789	0.44976	54.997	54.823	55.273	-2.792	-0.029474	0.00059675	NaN	60.294	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11319	+		1574	25408	1178	1179							0.07170654548144739
ALQGIIHSI	9	Unmodified	_ALQGIIHSI_					0	0	0		nc|ENSG00000169604|Q9H6X2-3|ANTXR1;ENST00000463335.1_1_2:69240622-69330161:+|nuORF;nc|ENSG00000169604|Q9H6X2-4|ANTXR1;MXD1-ANTXR1|2|fusion;nc|ENSG00000169604|Q9H6X2-6|ANTXR1;nc|ENSG00000169604|Q9H6X2-2|ANTXR1;MXD1-ANTXR1|3|fusion;nc|ENSG00000169604|Q9H6X2-5|ANTXR1;ENSG00000169604|ENST00000303714|ANTXR1;MXD1-ANTXR1|1|fusion	nc|ENSG00000169604|Q9H6X2-3|ANTXR1	nc|ENSG00000169604|Q9H6X2-3|ANTXR1	MULTI-MSMS	OvCa99_classI_Rep5	1	476.2864685058594	2	476.284734	950.554916	2.6576	0.0012658	-0.49047	-0.00023361	2.1671	0.0010322	476.28429571110667	96.48	0.84019	96.48	96.168	97.008	0					43	19	3	0	0	0	0.1804	1	10562	10562		79.713	20.931	1	1808000			1575	7023	1179	1180	2178	2178					0.07766064168481535
ALQGIIHSI	9	Unmodified	_ALQGIIHSI_					0	0	0		nc|ENSG00000169604|Q9H6X2-3|ANTXR1;ENST00000463335.1_1_2:69240622-69330161:+|nuORF;nc|ENSG00000169604|Q9H6X2-4|ANTXR1;MXD1-ANTXR1|2|fusion;nc|ENSG00000169604|Q9H6X2-6|ANTXR1;nc|ENSG00000169604|Q9H6X2-2|ANTXR1;MXD1-ANTXR1|3|fusion;nc|ENSG00000169604|Q9H6X2-5|ANTXR1;ENSG00000169604|ENST00000303714|ANTXR1;MXD1-ANTXR1|1|fusion	nc|ENSG00000169604|Q9H6X2-3|ANTXR1	nc|ENSG00000169604|Q9H6X2-3|ANTXR1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	476.284734	950.554916	-0.13999	-6.6674E-05	-0.26917	-0.0001282	-0.40916	-0.00019488	476.2845970383221	97.483	1.5699	96.524	95.629	97.199	-0.95857	-0.026785	0.00028199	NaN	79.713	87	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117430			1576	7023	1179	1180							0.07766064168481535
ALQGIIHSI	9	Unmodified	_ALQGIIHSI_					0	0	0		nc|ENSG00000169604|Q9H6X2-3|ANTXR1;ENST00000463335.1_1_2:69240622-69330161:+|nuORF;nc|ENSG00000169604|Q9H6X2-4|ANTXR1;MXD1-ANTXR1|2|fusion;nc|ENSG00000169604|Q9H6X2-6|ANTXR1;nc|ENSG00000169604|Q9H6X2-2|ANTXR1;MXD1-ANTXR1|3|fusion;nc|ENSG00000169604|Q9H6X2-5|ANTXR1;ENSG00000169604|ENST00000303714|ANTXR1;MXD1-ANTXR1|1|fusion	nc|ENSG00000169604|Q9H6X2-3|ANTXR1	nc|ENSG00000169604|Q9H6X2-3|ANTXR1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	476.284734	950.554916	0.48846	0.00023265	-0.89389	-0.00042575	-0.40543	-0.0001931	476.28418195665006	98.357	1.828	96.597	95.722	97.55	-1.7595	0.046277	-0.00031311	NaN	79.713	62	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141920			1577	7023	1179	1180							0.07766064168481535
ALQGIIHSI	9	Unmodified	_ALQGIIHSI_					0	0	0		nc|ENSG00000169604|Q9H6X2-3|ANTXR1;ENST00000463335.1_1_2:69240622-69330161:+|nuORF;nc|ENSG00000169604|Q9H6X2-4|ANTXR1;MXD1-ANTXR1|2|fusion;nc|ENSG00000169604|Q9H6X2-6|ANTXR1;nc|ENSG00000169604|Q9H6X2-2|ANTXR1;MXD1-ANTXR1|3|fusion;nc|ENSG00000169604|Q9H6X2-5|ANTXR1;ENSG00000169604|ENST00000303714|ANTXR1;MXD1-ANTXR1|1|fusion	nc|ENSG00000169604|Q9H6X2-3|ANTXR1	nc|ENSG00000169604|Q9H6X2-3|ANTXR1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	476.284734	950.554916	0.15294	7.2842E-05	-0.63415	-0.00030204	-0.48121	-0.00022919	476.28432339488666	98.928	1.4885	96.602	95.827	97.315	-2.3253	0.051306	-6.568E-05	NaN	79.713	86	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151120			1578	7023	1179	1180							0.07766064168481535
ALQGVPVY	8	Unmodified	_ALQGVPVY_					0	0	0		ENSG00000167178|ENST00000453268|ISLR2;ISLR2|p.A371Gfs*24|1|0.33|ENSG00000167178|chr15:74133864-74133868|GGCGG/-|frameshift_variant	ENSG00000167178|ENST00000453268|ISLR2	ENSG00000167178|ENST00000453268|ISLR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	424.2030334472656	2	423.739628	845.464704	0.13308	5.6392E-05	0.35106	0.00014876	0.48414	0.00020515	423.739503589543	51.187	0.59504	51.187	50.949	51.544	0					27	13	3	0	0	0	0.028476	1	3978	3978		15.636	0	1	598100			1579	6765	1180	1181	2179	2179					0.035790148400337785
ALQKALLV	8	Unmodified	_ALQKALLV_					0	0	0			REV__ENST00000552390.5_1_12:57926966-57928919:-|nuORF	REV__ENST00000552390.5_1_12:57926966-57928919:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	428.2863464355469	2	428.286746	854.558939	-0.73284	-0.00031386	0.96879	0.00041492	0.23595	0.00010106	428.2870129067913	105	1.3901	104.51	104.21	105.6	-0.48513					76	27	4	0	0	0	0.7043	1	9744	9744		42.474	0	1	441820	+		1580	16273	1181	1182	2180	2180					0.12584153662191966
ALQKALLV	8	Unmodified	_ALQKALLV_					0	0	0			REV__ENST00000552390.5_1_12:57926966-57928919:-|nuORF	REV__ENST00000552390.5_1_12:57926966-57928919:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	428.2876281738281	2	428.286746	854.558939	0.99158	0.00042468	-0.9535	-0.00040837	0.038079	1.6309E-05	428.28619958305893	106.07	1.3284	104.72	104.35	105.68	-1.3482					67	25	4	0	0	0	0.62934	1	7482	7482		57.811	7.7867	1	507380	+		1581	16273	1181	1182	2181	2181					0.12584153662191966
ALQNERDLL	9	Unmodified	_ALQNERDLL_					0	0	0		nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1;ENST00000475319.1_1_6:127611016-127636085:-|nuORF;nc|ENSG00000093144|Q9NTX5-3|ECHDC1	nc|ENSG00000093144|Q9NTX5-6|ECHDC1	nc|ENSG00000093144|Q9NTX5-6|ECHDC1	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.3037109375	2	536.293288	1070.57202	-1.8385	-0.000986	-4.4609	-0.0023923	-6.2994	-0.0033783	536.2907134861593	100.58	0.64554	99.745	99.459	100.1	-0.83052					17	12	2	0	0	0	0.027453	1	9232	9232		45.972	15.655	1	17419			1582	1908	1182	1183	2182	2182					0.039559399836207376
ALQPLLHTV	9	Unmodified	_ALQPLLHTV_					0	0	0		ENSG00000144730|ENST00000296318|IL17RD;nc|ENSG00000144730|Q8NFM7-2|IL17RD;ENST00000469841.5_1_3:57131519-57204269:-|nuORF;nc|ENSG00000144730|Q8NFM7-4|IL17RD;nc|ENSG00000144730|Q8NFM7-3|IL17RD	ENSG00000144730|ENST00000296318|IL17RD	ENSG00000144730|ENST00000296318|IL17RD	MULTI-MSMS	OvCa99_classI_Rep5	1	496.3026428222656	2	496.300384	990.586216	1.7808	0.00088383	0.17647	8.7582E-05	1.9573	0.00097141	496.300485131613	92.006	0.84086	92.006	91.753	92.594	0					51	19	4	0	0	0	0.053172	1	9932	9932		116.9	20.713	1	1065900			1583	5178	1183	1184	2183	2183					0.09054637202564209
ALQPPVLS	8	Unmodified	_ALQPPVLS_					0	0	0		TAF4|p.K971Ffs*103|1|0.04|ENSG00000130699|chr20:61998986-61998987|-/GAGGGTGAAG|frameshift_variant;ENSG00000130699|ENST00000252996|TAF4;ENST00000609041.1_1_20:60581499-60581991:-|nuORF;ENST00000436129.2_1_20:60551226-60583162:-|nuORF	TAF4|p.K971Ffs*103|1|0.04|ENSG00000130699|chr20:61998986-61998987|-/GAGGGTGAAG|frameshift_variant	TAF4|p.K971Ffs*103|1|0.04|ENSG00000130699|chr20:61998986-61998987|-/GAGGGTGAAG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	412.7458801269531	2	412.747453	823.480354	0.75275	0.0003107	-3.7611	-0.0015524	-3.0083	-0.0012417	412.74581316945023	134.99	1.618	134.76	134.29	135.91	-0.22696					65	32	3	0	0	0	0.75661	1	13329	13329		19.36	5.5846	1	284470			1584	32943	1184	1185	2184	2184					0.06155301357091503
ALQTLKGKV	9	Unmodified	_ALQTLKGKV_					0	0	0		nc|ENSG00000114982|Q9P2N6-7|KANSL3;ENST00000487070.5_1_2:97281260-97297069:-|nuORF	nc|ENSG00000114982|Q9P2N6-7|KANSL3	nc|ENSG00000114982|Q9P2N6-7|KANSL3	MULTI-SECPEP	OvCa9_classI_Rep2	2	480.2702941894531	2	479.30821	956.601866	-0.05766	-2.7637E-05	-0.79553	-0.0003813	-0.85319	-0.00040894	479.3079060387227	78.942	0.71003	77.202	76.855	77.565	-1.7398					20	13	2	0	0	0	0.027462	1	6634	6634		39.253	0	1	16519			1585	14973	1185	1186	2185	2185					0.12182923719615246
ALQYVAHGLI	10	Unmodified	_ALQYVAHGLI_					0	0	0			REV__nc|ENSG00000157087|Q01814-4|ATP2B2;REV__nc|ENSG00000067842|Q16720-8|ATP2B3	REV__nc|ENSG00000157087|Q01814-4|ATP2B2	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.8196411132812	2	542.811116	1083.60768	-0.39563	-0.00021475	-0.96488	-0.00052375	-1.3605	-0.0007385	543.3135741909708	75.713	0.20077	73.302	73.177	73.378	-2.4106					5	3	2	0	0	0	0.027021	1	3836	3836		29.15	3.6994	1	19655	+		1586	20511;16842	1186	1187	2186	2186					0.06922022231287883
ALQYVAHGLI	10	Unmodified	_ALQYVAHGLI_					0	0	0			REV__nc|ENSG00000157087|Q01814-4|ATP2B2;REV__nc|ENSG00000067842|Q16720-8|ATP2B3	REV__nc|ENSG00000157087|Q01814-4|ATP2B2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.811116	1083.60768	-1.0509	-0.00057045	-0.31715	-0.00017216	-1.3681	-0.00074261	542.8089086599082	74.894	0.35776	72.923	72.744	73.102	-1.9711	-0.18957	0.00020569	NaN	21.96	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8661.4	+		1587	20511;16842	1186	1187							0.06922022231287883
ALRALEEAV	9	Unmodified	_ALRALEEAV_					0	0	0		ENST00000524846.5_1_8:144643499-144644514:+|nuORF	ENST00000524846.5_1_8:144643499-144644514:+|nuORF	ENST00000524846.5_1_8:144643499-144644514:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.25555419921875	2	486.279649	970.544745	0.94755	0.00046077	-1.2097	-0.00058825	-0.26215	-0.00012748	486.27933124318594	110.22	1.1573	108.62	108.33	109.49	-1.6011					52	21	4	0	0	0	0.027462	1	10233	10233		29.15	10.825	1	79485			1588	13172	1187	1188	2187	2187					0.05829456443234449
ALRALEEAV	9	Unmodified	_ALRALEEAV_					0	0	0		ENST00000524846.5_1_8:144643499-144644514:+|nuORF	ENST00000524846.5_1_8:144643499-144644514:+|nuORF	ENST00000524846.5_1_8:144643499-144644514:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	486.279649	970.544745	0.23759	0.00011554	0.51142	0.00024869	0.74901	0.00036423	486.27967827970787	108.89	0.79099	108.67	108.37	109.16	-0.22498	0.046922	0.00038185	NaN	29.15	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37561			1589	13172	1187	1188							0.05829456443234449
ALRALEEAV	9	Unmodified	_ALRALEEAV_					0	0	0		ENST00000524846.5_1_8:144643499-144644514:+|nuORF	ENST00000524846.5_1_8:144643499-144644514:+|nuORF	ENST00000524846.5_1_8:144643499-144644514:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	486.279649	970.544745	-0.69368	-0.00033732	0.77531	0.00037702	0.081622	3.9691E-05	486.2799068106376	109.72	0.94416	108.57	108.19	109.14	-1.1444	-0.048187	0.0006385	NaN	29.15	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77331			1590	13172	1187	1188							0.05829456443234449
ALRAPLLL	8	Unmodified	_ALRAPLLL_					0	0	0		ENST00000490689.3_1_3:157815575-157815770:-|nuORF	ENST00000490689.3_1_3:157815575-157815770:-|nuORF	ENST00000490689.3_1_3:157815575-157815770:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	433.794921875	2	433.794738	865.574923	0.58254	0.0002527	-0.42547	-0.00018457	0.15707	6.8137E-05	433.7944359498501	111.98	2.1215	111.84	111.47	113.59	-0.13961					92	42	4	0	0	0	0.69415	1	10575	10575		44.531	2.0566	1	565240			1591	12699	1188	1189	2188	2188					0.13675859899092302
ALRAPLLL	8	Unmodified	_ALRAPLLL_					0	0	0		ENST00000490689.3_1_3:157815575-157815770:-|nuORF	ENST00000490689.3_1_3:157815575-157815770:-|nuORF	ENST00000490689.3_1_3:157815575-157815770:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	433.7951354980469	2	433.794738	865.574923	1.6323	0.0007081	-1.4478	-0.00062804	0.18456	8.0061E-05	433.79397915293447	113.07	1.9686	111.99	111.66	113.63	-1.0753					76	38	3	0	0	0	0.63104	1	8291	8291		57.453	2.688	1	587780			1592	12699	1188	1189	2189	2189					0.13675859899092302
ALRASRQL	8	Unmodified	_ALRASRQL_					0	0	0			REV__nc|ENSG00000166452|Q9NQ31-3|AKIP1	REV__nc|ENSG00000166452|Q9NQ31-3|AKIP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.28387451171875	2	457.780151	913.545748	-0.57777	-0.00026449	3.1362	0.0014357	2.5584	0.0011712	457.7801444808238	51.29	1.765	48.117	47.721	49.486	-3.1734					87	34	4	0	0	0	0.66057	1	3017	3017		51.335	4.569	1	312550	+		1593	21197	1189	1190	2190	2190					0.08551715602800414
ALRDRPLAL	9	Unmodified	_ALRDRPLAL_					0	0	0		Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|236|3|anti-sense	Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|236|3|anti-sense	Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|236|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	512.8143920898438	2	512.816733	1023.61891	-1.1249	-0.00057686	2.41	0.0012359	1.2851	0.00065901	512.8174858851256	63.537	1.2048	60.792	60.48	61.685	-2.7444					52	22	3	0	0	0	0.21231	1	4825	4825		74.255	24.813	1	277420			1594	14372	1190	1191	2191	2191					0.10804844325411977
ALRDRPLAL	9	Unmodified	_ALRDRPLAL_					0	0	0		Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|236|3|anti-sense	Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|236|3|anti-sense	Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|236|3|anti-sense	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	512.816733	1023.61891	0.13871	7.1134E-05	1.4219	0.00072917	1.5606	0.0008003	512.8169197437568	64.518	0.97002	61.035	60.726	61.696	-3.4833	0.12129	-0.00052114	NaN	74.255	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	431950			1595	14372	1190	1191							0.10804844325411977
ALRDVSEEL	9	Unmodified	_ALRDVSEEL_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	OvCa9_classI_Rep3	3	516.2730102539062	2	516.272021	1030.52949	0.78686	0.00040624	-0.93588	-0.00048317	-0.14902	-7.6932E-05	516.2714783528818	79.368	1.2589	77.029	76.754	78.013	-2.3399					69	24	4	0	0	0	0.3249	1	4291	4291		60.118	5.3419	1	908090			1596	1717	1191	1192	2192	2192					0.01544544855391905
ALRFGLPAI	9	Unmodified	_ALRFGLPAI_					0	0	0			REV__ENST00000564834.1_1_7:152161668-152162124:+|nuORF	REV__ENST00000564834.1_1_7:152161668-152162124:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	479.29681396484375	2	479.297645	956.580737	-1.3578	-0.00065077	2.0715	0.00099287	0.71375	0.0003421	479.2986205299696	63.594	1.7865	60.85	60.427	62.213	-2.7444					68	33	3	0	0	0	0.52083	1	4818	4818		40.573	5.3719	1	364840	+		1597	27670	1192	1193	2193	2193					0.10070958410744879
ALRFGLPAI	9	Unmodified	_ALRFGLPAI_					0	0	0			REV__ENST00000564834.1_1_7:152161668-152162124:+|nuORF	REV__ENST00000564834.1_1_7:152161668-152162124:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	479.297645	956.580737	-1.3578	-0.00065077	2.0715	0.00099287	0.71375	0.0003421	479.2986205299696	63.594	1.7865	60.85	60.427	62.213	-2.7444	-0.096166	0.0011979	NaN	40.573	68	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	364840	+		1598	27670	1192	1193							0.10070958410744879
ALRFGLPAI	9	Unmodified	_ALRFGLPAI_					0	0	0			REV__ENST00000564834.1_1_7:152161668-152162124:+|nuORF	REV__ENST00000564834.1_1_7:152161668-152162124:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	479.297645	956.580737	0.3875	0.00018573	0.23635	0.00011328	0.62385	0.00029901	479.2976948172597	64.528	1.503	61.042	60.724	62.227	-3.4854	0.096166	-0.00056131	NaN	40.573	63	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	562210	+		1599	27670	1192	1193							0.10070958410744879
ALRGGLLLQV	10	Unmodified	_ALRGGLLLQV_					0	0	0		ENSG00000261667|ENST00000562505|LY6L	ENSG00000261667|ENST00000562505|LY6L	ENSG00000261667|ENST00000562505|LY6L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.8422241210938	2	520.334759	1038.65496	-0.82649	-0.00043005	-3.9028	-0.0020308	-4.7293	-0.0024608	520.3321137691378	104.26	0.15684	102.14	102.01	102.17	-2.1192					4	2	2	0	0	0	0.02661	1	9429	9429		25.574	0	1	12644			1600	9504	1193	1194	2194	2194					0.13718301502285613
ALRHIKCPHRR	11	Unmodified	_ALRHIKCPHRR_					0	0	0			REV__chr8:143021433-143031866|139|231.55|0.41|9.15|+|1|TE_info:LTR62,LTR62_dup139,ERVL,LTR,acceptor,+,143031866,143032468|LY6E,None|3	REV__chr8:143021433-143031866|139|231.55|0.41|9.15|+|1|TE_info:LTR62,LTR62_dup139,ERVL,LTR,acceptor,+,143031866,143032468|LY6E,None|3	MULTI-MSMS	OvCa9_classI_Rep2	2	462.9366149902344	3	462.938568	1385.79387	0.079191	3.666E-05	-4.2984	-0.0019899	-4.2192	-0.0019532	462.9367014144655	44.408	4.3763	41.698	41.303	45.679	-2.7097					263	87	6	0	0	0	0.69735	2	2664	2651;2664		30.569	11.306	1	4456400	+		1601	16109	1194	1195	2195;2196	2196					0.11640940918778142
ALRHRKVL	8	Unmodified	_ALRHRKVL_					0	0	0			REV__ENSG00000145362|ENST00000357077|ANK2	REV__ENSG00000145362|ENST00000357077|ANK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.7644958496094	2	496.827435	991.640317	3.5034	0.0017406	0.68063	0.00033815	4.184	0.0020787	496.82754940805114	88.469	0.16594	88.469	88.342	88.508	0					6	3	2	0	0	0	0.028476	1	9406	9406		19.36	6.4008	1	57903	+		1602	19961	1195	1196	2197	2197					0.14416274144798535
ALRIPNELN	9	Unmodified	_ALRIPNELN_					0	0	0			REV__nc|ENSG00000110435|O00330-2|PDHX	REV__nc|ENSG00000110435|O00330-2|PDHX	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.8423461914062	2	520.298373	1038.58219	-0.75883	-0.00039482	4.2216	0.0021965	3.4628	0.0018017	520.3001448461509	102.39	0.64182	101.7	101.44	102.08	-0.68459					22	12	2	0	0	0	0.027402	1	9403	9403		66.429	0	1	22386	+		1603	17984	1196	1197	2198	2198					0.06444547708861137
ALRKLNDLV	9	Unmodified	_ALRKLNDLV_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	OvCa99_classI_Rep5	1	521.3257446289062	2	521.324391	1040.63423	-0.47623	-0.00024827	0.98448	0.00051324	0.50825	0.00026496	521.3245115727826	70.945	0.74619	70.945	70.603	71.349	0					33	18	3	0	0	0	0.18193	1	6834	6834		79.451	10.664	1	1994000			1604	1044	1197	1198	2199	2199					0.11553711122587629
ALRKMELNL	9	Unmodified	_ALRKMELNL_					0	0	0			REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-SECPEP	OvCa9_classI_Rep2	2	543.7941284179688	2	544.318251	1086.62195	-0.50439	-0.00027455	3.4485	0.0018771	2.9441	0.0016025	544.8208180228218	105.97	1.2956	105.53	105.2	106.49	-0.43642					58	25	4	0	0	0	0.027461	1	9955	9955		49.442	17.912	1	145750	+		1605	21647	1198	1199	2200	2200					0.08210351387924675
ALRLPSLL	8	Unmodified	_ALRLPSLL_					0	0	0		ENST00000514698.5_1_4:980866-997838:+|nuORF;ENSG00000127415|ENST00000514224|IDUA;nc|ENSG00000127415|P35475-2|IDUA	ENST00000514698.5_1_4:980866-997838:+|nuORF	ENST00000514698.5_1_4:980866-997838:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	441.7911682128906	2	441.792195	881.569838	0.82414	0.0003641	-0.58903	-0.00026023	0.23511	0.00010387	441.79181108762515	98.876	1.2936	97.983	97.707	99.001	-0.89305					68	25	4	0	0	0	0.60331	1	9006	9006		63.306	7.8021	1	472290			1606	3830	1199	1200	2201	2201					0.12431556036472102
ALRLPSLL	8	Unmodified	_ALRLPSLL_					0	0	0		ENST00000514698.5_1_4:980866-997838:+|nuORF;ENSG00000127415|ENST00000514224|IDUA;nc|ENSG00000127415|P35475-2|IDUA	ENST00000514698.5_1_4:980866-997838:+|nuORF	ENST00000514698.5_1_4:980866-997838:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	441.792195	881.569838	-1.3566	-0.00059932	1.4034	0.00062	0.046819	2.0684E-05	441.79269827144213	100.44	1.2415	98.176	97.825	99.066	-2.2665	0.086078	0.00073596	NaN	63.306	61	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	548140			1607	3830	1199	1200							0.12431556036472102
ALRLPSLLL	9	Unmodified	_ALRLPSLLL_					0	0	0		ENST00000514698.5_1_4:980866-997838:+|nuORF;ENSG00000127415|ENST00000514224|IDUA;nc|ENSG00000127415|P35475-2|IDUA	ENST00000514698.5_1_4:980866-997838:+|nuORF	ENST00000514698.5_1_4:980866-997838:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.33447265625	2	498.334227	994.653902	-1.8174	-0.00090567	1.0953	0.00054583	-0.72208	-0.00035984	498.334772441205	125.12	4.2738	123.72	123.39	127.66	-1.3908					210	84	5	0	0	0	0.37135	1	11857	11857		54.776	6.8607	1	4129000			1608	3830	1200	1201	2202	2202					0.15636087133384535
ALRNPRVTL	9	Unmodified	_ALRNPRVTL_					0	0	0		ENST00000268989.7_1_17:2283605-2283749:+|nuORF	ENST00000268989.7_1_17:2283605-2283749:+|nuORF	ENST00000268989.7_1_17:2283605-2283749:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.32275390625	2	520.322183	1038.62981	-0.019937	-1.0373E-05	-0.80021	-0.00041637	-0.82015	-0.00042674	520.3217162232052	60.154	1.2388	56.724	56.456	57.694	-3.43					47	24	2	0	0	0	0.56189	1	4054	4054		36.447	7.2972	1	846470			1609	9977	1201	1202	2203	2203					0.11204246699708165
ALRNWFCAL	9	Unmodified	_ALRNWFCAL_					0	0	0			REV__ENST00000377452.3_1_20:18744192-18744426:+|nuORF	REV__ENST00000377452.3_1_20:18744192-18744426:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	547.2860717773438	2	547.284211	1092.55387	0.82891	0.00045365	-1.7268	-0.00094503	-0.89785	-0.00049138	547.2828502072887	153.85	0.72375	153.85	153.5	154.22	0					19	14	2	0	0	0	0.53957	1	18019	18019		38.806	6.0556	1	56232	+		1610	25122	1202	1203	2204	2204					0.011295265278931765
ALRPTTFR	8	Unmodified	_ALRPTTFR_					0	0	0		ENST00000504562.1_1_5:40834313-40834647:-|nuORF	ENST00000504562.1_1_5:40834313-40834647:-|nuORF	ENST00000504562.1_1_5:40834313-40834647:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	481.2834167480469	2	481.282526	960.550499	-0.81055	-0.0003901	0.44052	0.00021201	-0.37003	-0.00017809	481.28269787534566	57.799	2.0625	55.007	54.377	56.44	-2.7921					121	40	4	0	0	0	0.71267	1	4150	4150		40.778	5.1599	1	1037900			1611	12877	1203	1204	2205	2205					0.06864599745563282
ALRRMVTG	8	Unmodified	_ALRRMVTG_					0	0	0		ENST00000431015.5_2_3:46722577-46730936:-|nuORF	ENST00000431015.5_2_3:46722577-46730936:-|nuORF	ENST00000431015.5_2_3:46722577-46730936:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	452.2635803222656	2	452.263279	902.512005	1.0415	0.00047105	1.0544	0.00047687	2.0959	0.00094792	452.26357113251356	74.387	1.2335	74.387	74.135	75.369	0					57	30	3	0	0	0	0.73938	1	7345	7345		31.955	0	1	3412500			1612	11795	1204	1205	2206	2206					0.05684970839399739
ALRSAYLL	8	Unmodified	_ALRSAYLL_					0	0	0			REV__nc|ENSG00000120341|Q96JE7-3|SEC16B	REV__nc|ENSG00000120341|Q96JE7-3|SEC16B	MULTI-MSMS	OvCa9_classI_Rep4_	4	453.77508544921875	2	453.774003	905.533452	-0.20968	-9.5149E-05	0.50433	0.00022885	0.29465	0.0001337	453.7739552266696	92.193	1.3662	89.651	89.262	90.628	-2.5425					72	26	4	0	0	0	0.62934	1	8007	8007		57.811	2.3071	1	393790	+		1613	24494	1205	1206	2207	2207					0.076906791397505
ALRSAYLL	8	Unmodified	_ALRSAYLL_					0	0	0			REV__nc|ENSG00000120341|Q96JE7-3|SEC16B	REV__nc|ENSG00000120341|Q96JE7-3|SEC16B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	453.774003	905.533452	3.0958	0.0014048	-2.442	-0.0011081	0.6538	0.00029668	453.772607473464	90.849	1.6615	89.614	89.242	90.904	-1.2355	0.0077164	-0.0017126	NaN	57.811	81	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	328390	+		1614	24494	1205	1206							0.076906791397505
ALRSAYLL	8	Unmodified	_ALRSAYLL_					0	0	0			REV__nc|ENSG00000120341|Q96JE7-3|SEC16B	REV__nc|ENSG00000120341|Q96JE7-3|SEC16B	MULTI-MATCH	OvCa9_classI_Rep3	3		2	453.774003	905.533452	-0.89929	-0.00040808	0.94985	0.00043102	0.050559	2.2942E-05	453.77418585425136	91.578	0.99384	89.554	89.231	90.225	-2.0241	-0.052204	0.0013657	NaN	57.811	65	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	420940	+		1615	24494	1205	1206							0.076906791397505
ALRSGDAVFL	10	Unmodified	_ALRSGDAVFL_					0	0	0		ENSG00000186603|ENST00000334815|HPDL	ENSG00000186603|ENST00000334815|HPDL	ENSG00000186603|ENST00000334815|HPDL	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.7937622070312	2	524.792924	1047.57129	-1.2265	-0.00064368	1.1083	0.00058161	-0.11828	-6.207E-05	524.7934682439004	92.013	1.3664	89.47	89.111	90.478	-2.5425					63	26	3	0	0	0	0.39172	1	7994	7994		69.628	3.1983	1	546010			1616	8348	1206	1207	2208	2208					0.049411453345555856
ALRSGDAVFL	10	Unmodified	_ALRSGDAVFL_					0	0	0		ENSG00000186603|ENST00000334815|HPDL	ENSG00000186603|ENST00000334815|HPDL	ENSG00000186603|ENST00000334815|HPDL	MULTI-MATCH	OvCa9_classI_Rep2	2		2	524.792924	1047.57129	1.5164	0.00079578	-1.4196	-0.00074502	0.096722	5.0759E-05	524.7921991294021	90.682	1.341	89.38	89.077	90.418	-1.302	-0.057484	-0.0020374	NaN	69.628	67	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	433460			1617	8348	1206	1207							0.049411453345555856
ALRSGDAVFL	10	Unmodified	_ALRSGDAVFL_					0	0	0		ENSG00000186603|ENST00000334815|HPDL	ENSG00000186603|ENST00000334815|HPDL	ENSG00000186603|ENST00000334815|HPDL	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	524.792924	1047.57129	-1.3536	-0.00071034	0.94436	0.0004956	-0.4092	-0.00021474	524.7933479573511	91.486	1.1059	89.462	89.029	90.135	-2.0241	0.024544	0.00044383	NaN	69.628	59	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	656110			1618	8348	1206	1207							0.049411453345555856
ALRSHLKSF	9	Unmodified	_ALRSHLKSF_					0	0	0		ENSG00000102128|ENST00000218249|RAB40AL;ENST00000576359.1_1_17:80615741-80616143:-|nuORF;ENSG00000141542|ENST00000571995|RAB40B	ENSG00000102128|ENST00000218249|RAB40AL	ENSG00000102128|ENST00000218249|RAB40AL	MULTI-MSMS	OvCa9_classI_Rep2	2	529.8085327148438	2	529.808908	1057.60326	-0.30944	-0.00016395	-1.1024	-0.00058406	-1.4118	-0.000748	529.8082658364003	80.403	1.7105	78.708	78.37	80.08	-1.6951					93	32	4	0	0	0	0.46356	1	6810	6810		45.972	10.82	1	1665600			1619	2223	1207	1208	2209	2209					0.07676557808372309
ALRSHLKSF	9	Unmodified	_ALRSHLKSF_					0	0	0		ENSG00000102128|ENST00000218249|RAB40AL;ENST00000576359.1_1_17:80615741-80616143:-|nuORF;ENSG00000141542|ENST00000571995|RAB40B	ENSG00000102128|ENST00000218249|RAB40AL	ENSG00000102128|ENST00000218249|RAB40AL	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.8101196289062	2	529.808908	1057.60326	-1.6351	-0.00086631	-0.23386	-0.0001239	-1.869	-0.0009902	529.8085286457653	81.385	1.3592	78.674	78.298	79.657	-2.7106					77	27	4	0	0	0	0.42676	1	6705	6705		49.442	8.8689	1	2054100			1620	2223	1207	1208	2210	2210					0.07676557808372309
ALRSKCPPSL	10	Unmodified	_ALRSKCPPSL_					0	0	0			REV__ENSG00000079277|ENST00000371945|MKNK1	REV__ENSG00000079277|ENST00000371945|MKNK1	MULTI-MSMS	OvCa9_classI_Rep3	3	536.3046264648438	2	536.302601	1070.59065	0.17096	9.1684E-05	-0.19059	-0.00010221	-0.019632	-1.0529E-05	536.3023063408742	101.69	1.2577	100.16	99.74	101	-1.5211					47	23	3	0	0	0	0.55359	1	6959	6959		47.657	5.2612	1	222060	+		1621	17038	1208	1209	2211	2211					0.05817778353821268
ALRSRITQ	8	Unmodified	_ALRSRITQ_					0	0	0		nc|ENSG00000139116|Q7Z4S6-6|KIF21A;nc|ENSG00000139116|Q7Z4S6-3|KIF21A;nc|ENSG00000139116|Q7Z4S6-5|KIF21A;nc|ENSG00000139116|Q7Z4S6-2|KIF21A;ENSG00000139116|ENST00000361418|KIF21A;nc|ENSG00000139116|Q7Z4S6-4|KIF21A	nc|ENSG00000139116|Q7Z4S6-6|KIF21A	nc|ENSG00000139116|Q7Z4S6-6|KIF21A	MULTI-MSMS	OvCa9_classI_Rep2	2	472.7851257324219	2	472.785433	943.556313	1.3192	0.0006237	-1.3249	-0.0006264	-0.0057136	-2.7013E-06	472.78465285146206	29.187	1.0318	26.478	26.18	27.212	-2.7097					38	21	3	0	0	0	0.74754	1	686	686		27.882	4.8398	1	56287			1622	4741	1209	1210	2212	2212					0.08227698257235261
ALRTIPVLL	9	Unmodified	_ALRTIPVLL_					0	0	0		tr|A0A7D6VQV5|A0A7D6VQV5_9CLOT6-phospho-beta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16735PE=3SV=1	tr|A0A7D6VQV5|A0A7D6VQV5_9CLOT6-phospho-beta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16735PE=3SV=1	tr|A0A7D6VQV5|A0A7D6VQV5_9CLOT6-phospho-beta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16735PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3326110839844	2	498.334227	994.653902	1.9139	0.00095378	-2.3002	-0.0011463	-0.38626	-0.00019248	498.33299664402506	137.15	1.8718	135.61	134.84	136.71	-1.5437					88	39	4	0	0	0	0.55588	1	13387	13387		37.159	0	1	198330			1623	34871	1210	1211	2213	2213					0.15636087133384535
ALRVAPVLL	9	Unmodified	_ALRVAPVLL_					0	0	0			REV__ENST00000394636.8_1_16:54964782-54965211:+|nuORF	REV__ENST00000394636.8_1_16:54964782-54965211:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.32208251953125	2	476.32112	950.627687	1.2312	0.00058647	-1.6541	-0.0007879	-0.42288	-0.00020143	476.3202634501802	110.36	1.7889	108.76	108.33	110.12	-1.6011					99	33	4	0	0	0	0.44294	1	10228	10228		47.916	7.343	1	1730200	+		1624	25300	1211	1212	2214	2214					0.1503981796190601
ALRVKNKPL	9	Unmodified	_ALRVKNKPL_					0	0	0		nc|ENSG00000151892|P56159-2|GFRA1;ENSG00000151892|ENST00000355422|GFRA1	nc|ENSG00000151892|P56159-2|GFRA1	nc|ENSG00000151892|P56159-2|GFRA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.841796875	2	519.842751	1037.67095	-0.72199	-0.00037532	-0.072479	-3.7677E-05	-0.79447	-0.000413	519.8426952979958	104.34	3.079	102.22	101.85	104.93	-2.1192					170	59	5	0	0	0	0.27546	1	9420	9420		65.803	5.6849	1	1694100			1625	5592	1212	1213	2215	2215					0.15362007739167893
ALRVPAGRT	9	Unmodified	_ALRVPAGRT_					0	0	0		FAM180A|p.E16Kfs*54|1|0.04|ENSG00000189320|chr7:135748535-135748536|-/TTTGCTTTTT|frameshift_variant	FAM180A|p.E16Kfs*54|1|0.04|ENSG00000189320|chr7:135748535-135748536|-/TTTGCTTTTT|frameshift_variant	FAM180A|p.E16Kfs*54|1|0.04|ENSG00000189320|chr7:135748535-135748536|-/TTTGCTTTTT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	470.7881164550781	2	470.787976	939.561398	0.23229	0.00010936	-0.89827	-0.0004229	-0.66598	-0.00031354	470.78745923109625	40.781	2.1682	38.071	37.601	39.769	-2.7097					104	43	4	0	0	0	0.7044	1	2154	2154		16.473	1.809	1	1630700			1626	14320	1213	1214	2216	2216					0.08920002119862147
ALSALTARL	9	Unmodified	_ALSALTARL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	OvCa99_classI_Rep5	1	458.28643798828125	2	458.284734	914.554916	1.6505	0.00075639	0.69848	0.0003201	2.349	0.0010765	458.2849214013329	92.321	0.6701	92.321	92.092	92.762	0					36	15	4	0	0	0	0.022645	2	9995	9966;9995		143.89	26.983	1	2692700			1627	3322	1214	1215	2217;2218	2218					0.09422064168461475
ALSALTARL	9	Unmodified	_ALSALTARL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	OvCa9_classI_Rep2	2	458.2846374511719	2	458.284734	914.554916	0.61139	0.00028019	-0.55569	-0.00025467	0.055698	2.5526E-05	458.28430052128635	93.354	1.5843	92.186	91.953	93.538	-1.168					62	30	3	0	0	0	0.049969	2	8340	8335;8340		118.74	33.828	1	350300			1628	3322	1214	1215	2219;2220	2220					0.09422064168461475
ALSALTARL	9	Unmodified	_ALSALTARL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.2859802246094	2	458.284734	914.554916	-0.5221	-0.00023927	0.28695	0.0001315	-0.23515	-0.00010777	458.2847786288437	94.737	1.5566	92.268	92.01	93.566	-2.4685					61	30	4	0	0	0	0.070405	3	8308	8308;8320;8334		107.01	35.712	1	415060			1629	3322	1214	1215	2221;2222;2223	2221					0.09422064168461475
ALSALTARL	9	Unmodified	_ALSALTARL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	458.284734	914.554916	-0.79254	-0.00036321	0.83473	0.00038254	0.042191	1.9335E-05	458.28499354248476	94.129	1.4639	92.233	91.95	93.414	-1.8956	-0.018945	0.00058563	NaN	143.89	60	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	450510			1630	3322	1214	1215							0.09422064168461475
ALSDELDRL	9	Unmodified	_ALSDELDRL_					0	0	0			REV__nc|ENSG00000160789|P02545-5|LMNA;REV__ENST00000496738.5_1_1:156104620-156106879:+|nuORF	REV__nc|ENSG00000160789|P02545-5|LMNA	MULTI-MSMS	OvCa99_classI_Rep5	1	516.2747192382812	2	516.272021	1030.52949	1.2259	0.00063292	1.6655	0.00085987	2.8915	0.0014928	516.2727394663556	79.32	0.83333	79.32	79.037	79.87	0					54	20	4	0	0	0	0.35444	1	8114	8114		56.721	1.9447	1	12625000	+		1631	20673;26767	1215	1216	2224	2224					0.015445448553691676
ALSDHHIYL	9	Unmodified	_ALSDHHIYL_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	OvCa99_classI_Rep5	1	534.7793579101562	2	534.777274	1067.53999	0.44873	0.00023997	-1.988	-0.0010631	-1.5393	-0.00082316	534.7763124650185	72.003	2.8081	72.003	71.749	74.557	0					183	70	5	0	0	0	0.11842	3	7036	6976;7006;7036		92.191	28.884	1	153860000			1632	5491	1216	1217	2225;2226;2227	2227					0.008925723004722386
ALSDHHIYL	9	Unmodified	_ALSDHHIYL_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	OvCa9_classI_Rep2	2	534.7771606445312	2	534.777274	1067.53999	-1.5	-0.00080218	0.37928	0.00020283	-1.1207	-0.00059935	534.7775545384593	75.57	3.0209	73.716	73.323	76.344	-1.854					181	57	5	0	0	0	0.032351	13	6219	6210;6213;6219;6225;6231;6243;6255;6261;6267;6273;6279;6285;6291		133.47	45.773	1	9466200			1633	5491	1216	1217	2228;2229;2230;2231;2232;2233;2234;2235;2236;2237;2238;2239;2240	2230					0.008925723004722386
ALSDHHIYL	9	Unmodified	_ALSDHHIYL_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	OvCa9_classI_Rep3	3	534.77783203125	2	534.777274	1067.53999	0.17246	9.2226E-05	-1.2668	-0.00067747	-1.0944	-0.00058524	534.7766830786852	75.665	3.912	73.254	72.919	76.831	-2.4106					230	76	5	0	0	0	0.048552	14	3869	3828;3833;3839;3845;3851;3857;3863;3869;3876;3883;3895;3901;3909;3915		119.56	40.611	1	12370000			1634	5491	1216	1217	2241;2242;2243;2244;2245;2246;2247;2248;2249;2250;2251;2252;2253;2254	2248					0.008925723004722386
ALSDHHIYL	9	Unmodified	_ALSDHHIYL_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.7780151367188	2	534.777274	1067.53999	-1.2405	-0.0006634	0.2498	0.00013359	-0.99071	-0.00052981	534.7774103718646	76.653	3.4334	73.714	73.27	76.703	-2.9389					191	71	5	0	0	0	0.085069	7	6081	6081;6091;6103;6115;6139;6151;6164		101.21	29.834	1	12000000			1635	5491	1216	1217	2255;2256;2257;2258;2259;2260;2261	2255					0.008925723004722386
ALSDSIHTV	9	Unmodified	_ALSDSIHTV_					0	0	0		ENSG00000110851|ENST00000228437|PRDM4	ENSG00000110851|ENST00000228437|PRDM4	ENSG00000110851|ENST00000228437|PRDM4	MULTI-MSMS	OvCa99_classI_Rep5	1	471.7497253417969	2	471.748182	941.481811	-1.0847	-0.00051172	0.91046	0.00042951	-0.17428	-8.2218E-05	471.748504108455	70.07	0.89076	70.07	69.712	70.603	0					53	21	4	0	0	0	0.037627	1	6689	6689		128.86	52.014	1	6284300			1636	2798	1217	1218	2262	2262					0.008728906551937143
ALSEILLVR	9	Unmodified	_ALSEILLVR_					0	0	0			REV__nc|ENSG00000136813|Q5VYK3|ECPAS	REV__nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.3187255859375	2	507.321317	1012.62808	0.53325	0.00027053	-3.4237	-0.0017369	-2.8904	-0.0014664	507.319457072756	34.757	1.2525	31.968	31.698	32.95	-2.7881					50	24	3	0	0	0	0.58665	1	1066	1066		33.516	6.7195	1	167550	+		1637	19404	1218	1219	2263	2263					0.12227192891100458
ALSGHLETV	9	Unmodified	_ALSGHLETV_					0	0	0		nc|ENSG00000231991|A6NMY6|ANXA2P2;ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2	nc|ENSG00000231991|A6NMY6|ANXA2P2	nc|ENSG00000231991|A6NMY6|ANXA2P2	MULTI-MSMS	OvCa99_classI_Rep5	1	463.7521057128906	2	463.750724	925.486896	-0.10746	-4.9835E-05	-0.34413	-0.00015959	-0.45159	-0.00020943	463.7505398770069	65.198	1.4968	65.198	64.875	66.372	0					81	37	4	0	0	0	0.032351	2	5987	5958;5987		133.47	48.11	1	12972000			1638	8019	1219	1220	2264;2265	2265					0.02117194517813914
ALSGHLETV	9	Unmodified	_ALSGHLETV_					0	0	0		nc|ENSG00000231991|A6NMY6|ANXA2P2;ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2	nc|ENSG00000231991|A6NMY6|ANXA2P2	nc|ENSG00000231991|A6NMY6|ANXA2P2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	463.750724	925.486896	-1.2984	-0.00060215	1.2182	0.00056495	-0.080225	-3.7205E-05	463.7514643273897	67.972	0.78745	65.311	65.041	65.828	-2.661	0.045007	0.00099752	NaN	133.47	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26235			1639	8019	1219	1220							0.02117194517813914
ALSGHLETV	9	Unmodified	_ALSGHLETV_					0	0	0		nc|ENSG00000231991|A6NMY6|ANXA2P2;ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2	nc|ENSG00000231991|A6NMY6|ANXA2P2	nc|ENSG00000231991|A6NMY6|ANXA2P2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	463.750724	925.486896	-0.29286	-0.00013581	0.87772	0.00040704	0.58486	0.00027123	463.75078909445364	68.778	1.1803	65.288	64.916	66.096	-3.4902	0.022151	0.00068172	NaN	133.47	32	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94459			1640	8019	1219	1220							0.02117194517813914
ALSHLPAGTK	10	Unmodified	_ALSHLPAGTK_					0	0	0		ENST00000449505.5_2_3:52719457-52719595:-|nuORF	ENST00000449505.5_2_3:52719457-52719595:-|nuORF	ENST00000449505.5_2_3:52719457-52719595:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	497.7872619628906	2	497.787641	993.56073	-0.10832	-5.392E-05	-0.2741	-0.00013645	-0.38242	-0.00019036	497.78737708848206	45.132	1.745	42.422	42.049	43.794	-2.7097					77	34	4	0	0	0	0.44431	1	2639	2639		62.107	3.3255	1	697540			1641	12028	1220	1221	2266	2266					0.06369162680141471
ALSKEGIVAL	10	Unmodified	_ALSKEGIVAL_					0	0	0		ENSG00000146731|ENST00000275603|CCT6A;nc|ENSG00000146731|P40227-2|CCT6A;ENST00000482776.1_1_7:56124009-56126486:+|nuORF	ENSG00000146731|ENST00000275603|CCT6A	ENSG00000146731|ENST00000275603|CCT6A	MULTI-MSMS	OvCa99_classI_Rep5	1	500.80810546875	2	500.8055	999.596446	2.2772	0.0011404	0.054141	2.7114E-05	2.3313	0.0011675	500.8053282648503	88.909	0.55676	88.909	88.637	89.193	0					35	13	4	0	0	0	0.26424	1	9470	9470		85.161	24.189	1	1496400			1642	5303	1221	1222	2267	2267					0.09663200137140393
ALSKEGIVAL	10	Unmodified	_ALSKEGIVAL_					0	0	0		ENSG00000146731|ENST00000275603|CCT6A;nc|ENSG00000146731|P40227-2|CCT6A;ENST00000482776.1_1_7:56124009-56126486:+|nuORF	ENSG00000146731|ENST00000275603|CCT6A	ENSG00000146731|ENST00000275603|CCT6A	MULTI-MSMS	OvCa9_classI_Rep3	3	500.80609130859375	2	500.8055	999.596446	-1.0811	-0.00054143	0.64308	0.00032206	-0.43804	-0.00021937	500.8057046154282	90.957	1.7622	88.877	88.361	90.124	-2.0805					83	34	4	0	0	0	0.039859	3	5671	5671;5676;5683		132.76	32.236	1	909600			1643	5303	1221	1222	2268;2269;2270	2268					0.09663200137140393
ALSKFQGQLFT	11	Unmodified	_ALSKFQGQLFT_					0	0	0			REV__ENSG00000187783|ENST00000389583|TMEM72	REV__ENSG00000187783|ENST00000389583|TMEM72	MULTI-MSMS	OvCa9_classI_Rep4_	4	413.8955993652344	3	413.895917	1238.66592	0.2308	9.5529E-05	-2.6298	-0.0010884	-2.3989	-0.00099292	413.894810272949	47.136	2.6131	44.063	43.604	46.217	-3.0724					130	50	4	0	0	0	0.4397	1	2505	2505		58.246	1.8125	1	1170100	+		1644	22664	1222	1223	2271	2271					0.05613659085884137
ALSLAWIVV	9	Unmodified	_ALSLAWIVV_					0	0	0			REV__ENSG00000213699|ENST00000344420|SLC35F6	REV__ENSG00000213699|ENST00000344420|SLC35F6	MULTI-SECPEP	OvCa9_classI_Rep3	3	487.28253173828125	2	486.299853	970.585153	-1.0984	-0.00053415	-2.6133	-0.0012708	-3.7117	-0.001805	486.2981227193515	94.565	0.95412	92.669	92.307	93.261	-1.8956					32	18	2	0	0	0	0.027456	1	6161	6161		26.796	0	1	68544	+		1645	23268	1223	1224	2272	2272					0.09868422833653767
ALSNGVFPL	9	Unmodified	_ALSNGVFPL_					0	0	0		chr1:29252879-29255275|96|10.07|0.15|6.06|+|1|TE_info:MER21A,MER21A_dup20,ERVL,LTR,donor,-,29252731,29252879|None,PTPRU|1	chr1:29252879-29255275|96|10.07|0.15|6.06|+|1|TE_info:MER21A,MER21A_dup20,ERVL,LTR,donor,-,29252731,29252879|None,PTPRU|1	chr1:29252879-29255275|96|10.07|0.15|6.06|+|1|TE_info:MER21A,MER21A_dup20,ERVL,LTR,donor,-,29252731,29252879|None,PTPRU|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	459.255859375	2	459.258185	916.501818	-0.11966	-5.4956E-05	-4.1714	-0.0019157	-4.291	-0.0019707	459.2560636516375	57.29	1.0185	53.945	53.527	54.546	-3.3449					65	19	5	0	0	0	0.36502	1	3731	3731		55.504	0.72789	1	457050			1646	255	1224	1225	2273	2273					0.0402268638579244
ALSNHLNAV	9	Unmodified	_ALSNHLNAV_					0	0	0		nc|ENSG00000126214|Q07866-8|KLC1;nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866-3|KLC1;nc|ENSG00000126214|Q07866|KLC1;nc|ENSG00000126214|Q07866-7|KLC1;nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-6|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1;KLC1|p.T215Efs*65|1|0.11|ENSG00000126214|chr14:103662772-103662773|-/GAGACCCTGTCTCAGAAAAACAAGCAAT|frameshift_variant	nc|ENSG00000126214|Q07866-8|KLC1	nc|ENSG00000126214|Q07866-8|KLC1	MULTI-MSMS	OvCa99_classI_Rep5	1	469.7572021484375	2	469.756341	937.498129	0.057126	2.6835E-05	-0.53896	-0.00025318	-0.48183	-0.00022634	469.75622168043844	60.69	0.7226	60.69	60.477	61.2	0					38	16	3	0	0	0	0.35444	1	5311	5311		56.721	1.2168	1	875620			1647	3768	1225	1226	2274	2274					0.02688016611944022
ALSNHLNAV	9	Unmodified	_ALSNHLNAV_					0	0	0		nc|ENSG00000126214|Q07866-8|KLC1;nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866-3|KLC1;nc|ENSG00000126214|Q07866|KLC1;nc|ENSG00000126214|Q07866-7|KLC1;nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-6|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1;KLC1|p.T215Efs*65|1|0.11|ENSG00000126214|chr14:103662772-103662773|-/GAGACCCTGTCTCAGAAAAACAAGCAAT|frameshift_variant	nc|ENSG00000126214|Q07866-8|KLC1	nc|ENSG00000126214|Q07866-8|KLC1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	469.756341	937.498129	0.83967	0.00039444	0.20994	9.8619E-05	1.0496	0.00049306	469.7564921611465	64.575	0.38842	61.09	60.921	61.309	-3.4854	0.19984	0.00062424	NaN	56.721	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43865			1648	3768	1225	1226							0.02688016611944022
ALSNLEVKL	9	Unmodified	_ALSNLEVKL_					0	0	0		nc|ENSG00000149781|Q86UX7|FERMT3;ENSG00000149781|ENST00000345728|FERMT3;ENST00000546255.1_1_11:63979177-63987262:+|nuORF;ENST00000540957.1_1_11:63987010-63987876:+|nuORF;ENST00000541326.5_1_11:63979141-63987695:+|nuORF	nc|ENSG00000149781|Q86UX7|FERMT3	nc|ENSG00000149781|Q86UX7|FERMT3	MULTI-MSMS	OvCa99_classI_Rep5	1	493.79913330078125	2	493.797675	985.580796	1.4453	0.00071366	0.72222	0.00035663	2.1675	0.0010703	493.79794873816036	98.143	0.64027	98.143	97.912	98.552	0					41	14	4	0	0	0	0.024645	2	10812	10812;10844		141.52	26.026	1	8803300			1649	15087	1226	1227	2275;2276	2275					0.08742913620085346
ALSNLEVKL	9	Unmodified	_ALSNLEVKL_					0	0	0		nc|ENSG00000149781|Q86UX7|FERMT3;ENSG00000149781|ENST00000345728|FERMT3;ENST00000546255.1_1_11:63979177-63987262:+|nuORF;ENST00000540957.1_1_11:63987010-63987876:+|nuORF;ENST00000541326.5_1_11:63979141-63987695:+|nuORF	nc|ENSG00000149781|Q86UX7|FERMT3	nc|ENSG00000149781|Q86UX7|FERMT3	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.7978210449219	2	493.797675	985.580796	-0.8922	-0.00044057	0.73935	0.00036509	-0.15285	-7.5476E-05	493.79786840620545	100.07	1.1768	97.741	97.366	98.543	-2.3253					49	22	4	0	0	0	0.03923	1	8938	8938		127.46	17.342	1	393500			1650	15087	1226	1227	2277	2277					0.08742913620085346
ALSNLEVKL	9	Unmodified	_ALSNLEVKL_					0	0	0		nc|ENSG00000149781|Q86UX7|FERMT3;ENSG00000149781|ENST00000345728|FERMT3;ENST00000546255.1_1_11:63979177-63987262:+|nuORF;ENST00000540957.1_1_11:63987010-63987876:+|nuORF;ENST00000541326.5_1_11:63979141-63987695:+|nuORF	nc|ENSG00000149781|Q86UX7|FERMT3	nc|ENSG00000149781|Q86UX7|FERMT3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	493.797675	985.580796	-0.57193	-0.00028242	0.50125	0.00024751	-0.070685	-3.4904E-05	493.7977021939306	99.508	1.0077	97.823	97.524	98.532	-1.685	-0.049306	1.44E-05	NaN	141.52	42	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	303320			1651	15087	1226	1227							0.08742913620085346
ALSNPGDVI	9	Unmodified	_ALSNPGDVI_					0	0	0		ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;USP42|p.T566Pfs*13|1|0.11|ENSG00000106346|chr7:6149892-6149892|A/-|frameshift_variant	ENSG00000106346|ENST00000306177|USP42	ENSG00000106346|ENST00000306177|USP42	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.6031188964844	2	443.23745	884.460347	-2.1575	-0.00095629	2.4317	0.0010778	0.27421	0.00012154	443.23833666975185	49.688	1.8728	46.546	45.675	47.548	-3.1416					70	35	3	0	0	0	0.027441	1	2896	2896		49.442	0	1	176660			1652	2545	1227	1228	2278	2278					0.013495056264787308
ALSNQQKAVL	10	Unmodified	_ALSNQQKAVL_					0	0	0		ENST00000572014.1_1_17:2595653-2597426:-|nuORF;ENST00000574210.5_1_17:2594901-2597328:-|nuORF;nc|ENSG00000132361|O75153|CLUH;ENSG00000132361|ENST00000651024|CLUH	ENST00000572014.1_1_17:2595653-2597426:-|nuORF	ENST00000572014.1_1_17:2595653-2597426:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.7666015625	2	536.31148	1070.60841	-0.5377	-0.00028838	-0.31543	-0.00016917	-0.85313	-0.00045754	536.3112022668895	49.306	0.91347	49.306	48.986	49.899	0					52	20	5	0	0	0	0.026635	1	3676	3676		47.657	0	1	5654900			1653	4132	1228	1229	2279	2279					0.07592816880332975
ALSPHLLFL	9	Unmodified	_ALSPHLLFL_					0	0	0		ENST00000344651.4_1_12:121159601-121159766:+|nuORF	ENST00000344651.4_1_12:121159601-121159766:+|nuORF	ENST00000344651.4_1_12:121159601-121159766:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.8046569824219	2	505.805303	1009.59605	-0.50117	-0.0002535	-3.8937	-0.0019694	-4.3948	-0.0022229	505.8032776556792	102.71	1.307	100.51	100.15	101.46	-2.1994					40	24	2	0	0	0	0.22913	1	9257	9257		71.378	9.6866	1	217980			1654	10613	1229	1230	2280	2280					0.09163825207951959
ALSRLKLKL	9	Unmodified	_ALSRLKLKL_					0	0	0		nc|ENSG00000196419|P12956-2|XRCC6;ENSG00000196419|ENST00000360079|XRCC6;ENST00000435236.2_1_X:98974480-98975440:-|nuORF;XRCC6-L3MBTL2|1|fusion	nc|ENSG00000196419|P12956-2|XRCC6	nc|ENSG00000196419|P12956-2|XRCC6	MULTI-MSMS	OvCa99_classI_Rep5	1	521.3618774414062	2	521.360776	1040.707	0.20984	0.0001094	-0.34401	-0.00017935	-0.13417	-6.995E-05	521.3604391744649	66.879	0.98093	66.879	66.661	67.642	0					54	24	4	0	0	0	0.070405	1	6226	6226		107.01	2.261	1	5469700			1655	8606	1230	1231	2281	2281					0.18827464916012104
ALSSLLHAL	9	Unmodified	_ALSSLLHAL_					0	0	0		ENST00000483233.5_1_3:52003252-52003432:-|nuORF	ENST00000483233.5_1_3:52003252-52003432:-|nuORF	ENST00000483233.5_1_3:52003252-52003432:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	462.78021240234375	2	462.779285	923.544017	1.9985	0.00092485	0.072468	3.3537E-05	2.0709	0.00095839	462.77920004224086	110.83	0.7966	110.83	110.54	111.33	0					37	17	3	0	0	0	0.043206	2	12584	12584;12608		123.99	0	1	1333600			1656	12585	1231	1232	2282;2283	2282					0.0791866179419003
ALSSLLHAL	9	Unmodified	_ALSSLLHAL_					0	0	0		ENST00000483233.5_1_3:52003252-52003432:-|nuORF	ENST00000483233.5_1_3:52003252-52003432:-|nuORF	ENST00000483233.5_1_3:52003252-52003432:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	462.7796936035156	2	462.779285	923.544017	0.22281	0.00010311	-0.075088	-3.4749E-05	0.14772	6.8363E-05	462.7791214661868	111.25	1.9724	111.11	110.58	112.56	-0.1396					75	39	4	0	0	0	0.085069	4	10512	10495;10499;10506;10512		101.21	0	1	283220			1657	12585	1231	1232	2284;2285;2286;2287	2287					0.0791866179419003
ALSSLLHAL	9	Unmodified	_ALSSLLHAL_					0	0	0		ENST00000483233.5_1_3:52003252-52003432:-|nuORF	ENST00000483233.5_1_3:52003252-52003432:-|nuORF	ENST00000483233.5_1_3:52003252-52003432:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	462.77874755859375	2	462.779285	923.544017	1.7212	0.00079654	-1.8135	-0.00083925	-0.0923	-4.2715E-05	462.7783167345331	112.32	1.8453	111.24	110.92	112.77	-1.0753					72	36	4	0	0	0	0.098892	4	8208	8198;8203;8208;8216		97.473	0	1	289060			1658	12585	1231	1232	2288;2289;2290;2291	2290					0.0791866179419003
ALSSLLHAL	9	Unmodified	_ALSSLLHAL_					0	0	0		ENST00000483233.5_1_3:52003252-52003432:-|nuORF	ENST00000483233.5_1_3:52003252-52003432:-|nuORF	ENST00000483233.5_1_3:52003252-52003432:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.77960205078125	2	462.779285	923.544017	-0.1777	-8.2234E-05	-0.13277	-6.1444E-05	-0.31047	-0.00014368	462.7791291227676	112.78	1.7197	111.26	110.95	112.67	-1.5111					67	34	4	0	0	0	0.098892	3	10431	10422;10431;10444		97.473	0	1	333990			1659	12585	1231	1232	2292;2293;2294	2293					0.0791866179419003
ALSTALSEK	9	Unmodified	_ALSTALSEK_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	OvCa9_classI_Rep4_	4	460.2591552734375	2	460.258382	918.502212	-0.48062	-0.00022121	0.097999	4.5105E-05	-0.38262	-0.00017611	460.258286152919	58.272	1.7494	54.924	54.543	56.292	-3.3478					64	34	3	0	0	0	0.22035	1	3835	3835		72.879	14.097	1	794340			1660	6091	1232	1233	2295	2295					0.03970061315010298
ALSWWLFFNFF	11	Unmodified	_ALSWWLFFNFF_					0	0	0			REV__AluSg7_dup2598|chr5:139545417-139545723:-|1.2409937977611976|0.1210314063817212|3.36|414.0|17|3|anti-sense	REV__AluSg7_dup2598|chr5:139545417-139545723:-|1.2409937977611976|0.1210314063817212|3.36|414.0|17|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.27276611328125	3	493.248291	1476.72304	0.87153	0.00042988	4.0064	0.0019762	4.8779	0.002406	493.25051720569576	37.774	1.0448	34.882	34.392	35.437	-2.8925					43	20	3	0	0	0	0.026221	1	1471	1471		14.086	1.6532	1	25802	+		1661	15604	1233	1234	2296	2296					0.0037512636226892937
ALSYTIRAN	9	Unmodified	_ALSYTIRAN_					0	0	0			REV__nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	REV__nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.77777099609375	2	504.777274	1007.53999	-0.42508	-0.00021457	-0.17598	-8.883E-05	-0.60105	-0.0003034	504.77710651401486	57.709	2.0735	54.364	53.628	55.702	-3.3449					118	40	4	0	0	0	0.29717	1	3745	3745		63.306	1.1989	1	342660	+		1662	23574	1234	1235	2297	2297					0.036525723004729116
ALTELLAKI	9	Unmodified	_ALTELLAKI_					0	0	0		ENSG00000118971|ENST00000261254|CCND2;ENST00000536795.1_1_12:4387934-4398180:+|nuORF	ENSG00000118971|ENST00000261254|CCND2	ENSG00000118971|ENST00000261254|CCND2	MULTI-MSMS	OvCa9_classI_Rep2	2	486.310302734375	2	486.310418	970.606283	-0.063392	-3.0828E-05	0.43301	0.00021058	0.36962	0.00017975	486.31053033420585	122.61	0.98836	122.39	122.17	123.15	-0.21803					49	19	3	0	0	0	0.24951	4	11878	11878;11886;11891;11897		68.787	13.283	1	121260			1663	3335	1235	1236	2298;2299;2300;2301	2298					0.11980388142512766
ALTELLAKI	9	Unmodified	_ALTELLAKI_					0	0	0		ENSG00000118971|ENST00000261254|CCND2;ENST00000536795.1_1_12:4387934-4398180:+|nuORF	ENSG00000118971|ENST00000261254|CCND2	ENSG00000118971|ENST00000261254|CCND2	MULTI-MSMS	OvCa9_classI_Rep3	3	486.3113708496094	2	486.310418	970.606283	0.91435	0.00044466	1.4675	0.00071368	2.3819	0.0011583	486.31179030634246	123.42	1.603	122.39	122.15	123.75	-1.0377					64	30	3	0	0	0	0.22961	2	9526	9526;9532		71.296	12.514	1	196800			1664	3335	1235	1236	2302;2303	2302					0.11980388142512766
ALTFLYDSL	9	Unmodified	_ALTFLYDSL_					0	0	0			REV__ENST00000537496.5_1_12:109994835-109999125:-|nuORF	REV__ENST00000537496.5_1_12:109994835-109999125:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.307373046875	2	521.776408	1041.53826	-0.77598	-0.00040489	-3.5048	-0.0018287	-4.2808	-0.0022336	521.7745326892995	91.422	1.4244	88.879	88.398	89.822	-2.5425					33	22	2	0	0	0	0.027462	1	7872	7872		21.96	0	1	79482	+		1665	19609	1236	1237	2304	2304					0.019155184918417945
ALTGECKELE	10	Unmodified	_ALTGECKELE_					0	0	0		ENSG00000128272|ENST00000674920|ATF4	ENSG00000128272|ENST00000674920|ATF4	ENSG00000128272|ENST00000674920|ATF4	MULTI-SECPEP	OvCa9_classI_Rep2	2	545.822021484375	2	546.765714	1091.51688	-0.097927	-5.3543E-05	1.5032	0.00082191	1.4053	0.00076837	546.766307762343	83.12	1.4219	81.522	81.219	82.64	-1.5988					82	28	4	0	0	0	0.026681	1	7243	7243		36.447	4.4919	1	124180			1666	3872	1237	1238	2305	2305					-0.02522234599177864
ALTGECKELE	10	Unmodified	_ALTGECKELE_					0	0	0		ENSG00000128272|ENST00000674920|ATF4	ENSG00000128272|ENST00000674920|ATF4	ENSG00000128272|ENST00000674920|ATF4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	546.765714	1091.51688	-1.4766	-0.00080735	3.1916	0.0017451	1.715	0.0009377	546.7670341623285	83.786	1.3919	81.525	81.116	82.508	-2.261	-0.011805	0.0014173	NaN	22.58	82	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155250			1667	3872	1237	1238							-0.02522234599177864
ALTGECKELE	10	Unmodified	_ALTGECKELE_					0	0	0		ENSG00000128272|ENST00000674920|ATF4	ENSG00000128272|ENST00000674920|ATF4	ENSG00000128272|ENST00000674920|ATF4	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	546.765714	1091.51688	0.3623	0.00019809	1.2191	0.00066654	1.5814	0.00086463	546.7659779073016	84.227	1.2298	81.564	81.265	82.494	-2.6629	0.027165	-0.00073971	NaN	22.58	68	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114110			1668	3872	1237	1238							-0.02522234599177864
ALTGHLEEV	9	Unmodified	_ALTGHLEEV_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000495713.5_1_9:75775181-75782501:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MSMS	OvCa99_classI_Rep5	1	484.75714111328125	2	484.756007	967.497461	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.769	1	70.769	70.269	71.269	0								0	0	0	0.057846	1	6805	6805		76.847	13.54	1				1669	4351	1238	1239	2306	2306					0.012411771722327103
ALTIWILKV	9	Unmodified	_ALTIWILKV_					0	0	0		ENSG00000102683|ENST00000218867|SGCG	ENSG00000102683|ENST00000218867|SGCG	ENSG00000102683|ENST00000218867|SGCG	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.7902221679688	2	528.844428	1055.6743	0.92923	0.00049142	0.2632	0.00013919	1.1924	0.00063061	528.8450001766998	142.77	0.4893	142.77	142.49	142.98	0					15	9	2	0	0	0	0.027462	1	16704	16704		27.882	6.9353	1	23119			1670	2248	1239	1240	2307	2307					0.14869257793179713
ALTKLLEAKL	10	Unmodified	_ALTKLLEAKL_					0	0	0			REV__ENSG00000155561|ENST00000285968|NUP205	REV__ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OvCa9_classI_Rep3	3	550.3580932617188	2	550.357899	1098.70125	0.94567	0.00052046	-1.0264	-0.00056488	-0.080715	-4.4422E-05	550.3571718874979	123.64	1.1329	122.61	122.36	123.49	-1.0377					40	21	3	0	0	0	0.52439	1	9547	9547		51.193	1.6567	1	83854	+		1671	20431	1240	1241	2308	2308					0.1558432161368728
ALTKLLEAKL	10	Unmodified	_ALTKLLEAKL_					0	0	0			REV__ENSG00000155561|ENST00000285968|NUP205	REV__ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.3588256835938	2	550.357899	1098.70125	-0.71683	-0.00039451	0.6705	0.00036901	-0.046331	-2.5498E-05	550.3581986959526	124.07	1.0647	122.67	122.37	123.44	-1.3908					42	20	3	0	0	0	0.5675	1	11757	11757		45.972	1.8554	1	73380	+		1672	20431	1240	1241	2309	2309					0.1558432161368728
ALTKLLEAKL	10	Unmodified	_ALTKLLEAKL_					0	0	0			REV__ENSG00000155561|ENST00000285968|NUP205	REV__ENSG00000155561|ENST00000285968|NUP205	MULTI-MATCH	OvCa9_classI_Rep2	2		2	550.357899	1098.70125	0.29903	0.00016457	-0.37517	-0.00020648	-0.076147	-4.1908E-05	550.3576856804843	122.69	0.83998	122.47	122.27	123.11	-0.21803	-0.11394	-0.00033513	NaN	51.193	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50634	+		1673	20431	1240	1241							0.1558432161368728
ALTKNLGL	8	Unmodified	_ALTKNLGL_					0	0	0			REV__ENST00000559270.5_2_14:24507775-24520174:+|nuORF	REV__ENST00000559270.5_2_14:24507775-24520174:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	415.26031494140625	2	415.260728	828.506903	-0.98554	-0.00040926	1.1241	0.00046678	0.13852	5.7522E-05	415.2610696855443	34.499	1.0395	31.789	31.513	32.553	-2.7097					31	20	3	0	0	0	0.74679	1	1332	1332		28.254	0	1	69011	+		1674	27594	1241	1242	2310	2310					0.08578990248417995
ALTLNRTVVDP	11	Unmodified	_ALTLNRTVVDP_					0	0	0		tr|A0A7D6ZFA8|A0A7D6ZFA8_9CLOT6-phospho-alpha-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14200PE=3SV=1	tr|A0A7D6ZFA8|A0A7D6ZFA8_9CLOT6-phospho-alpha-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14200PE=3SV=1	tr|A0A7D6ZFA8|A0A7D6ZFA8_9CLOT6-phospho-alpha-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14200PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	400.23052978515625	3	400.231189	1197.67174	1.4758	0.00059066	-4.0049	-0.0016029	-2.5291	-0.0010122	400.2296656139339	31.004	2.2168	31.004	30.483	32.7	0					86	44	4	0	0	0	0.53283	1	1231	1231		50.791	4.8831	1	6329900			1675	35505	1242	1243	2311	2311					0.08080757597554111
ALTNREILEVF	11	Unmodified	_ALTNREILEVF_					0	0	0		USH2A|p.Y4273Cfs*19|1|0.36|ENSG00000042781|chr1:215675092-215675093|AT/-|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A;USH2A|p.A4046Dfs*53|1|0.04|ENSG00000042781|chr1:215680306-215680307|-/T|frameshift_variant;USH2A|p.F2516Rfs*28|1|0.25|ENSG00000042781|chr1:215900123-215900124|-/AAGGTTATTGTCACTAAACAACAAGTAAATAAGGGAGGCTCATTTCT|frameshift_variant;nc|ENSG00000042781|O75445-2|USH2A	USH2A|p.Y4273Cfs*19|1|0.36|ENSG00000042781|chr1:215675092-215675093|AT/-|frameshift_variant	USH2A|p.Y4273Cfs*19|1|0.36|ENSG00000042781|chr1:215675092-215675093|AT/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	435.57720947265625	3	435.578477	1303.7136	-4.6555	-0.0020278	2.9816	0.0012987	-1.6739	-0.0007291	435.5796132293939	156.67	0.9194	155.13	154.79	155.71	-1.545					57	27	3	0	0	0	0.72493	1	15480	15480		16.53	2.4438	1	39973			1676	1126	1243	1244	2312	2312					0.07389313286057586
ALTQNPLLL	9	Unmodified	_ALTQNPLLL_					0	0	0			REV__ENST00000442582.1_2_2:73227612-73268044:-|nuORF	REV__ENST00000442582.1_2_2:73227612-73268044:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	491.7989501953125	2	491.800217	981.585882	0.015139	7.4454E-06	-0.71075	-0.00034955	-0.69561	-0.0003421	491.79978875845774	107.24	3.4509	105.98	105.67	109.12	-1.267					161	66	5	0	0	0	0.55588	1	7670	7670		37.159	2.9866	1	2343100	+		1677	19888	1244	1245	2313	2313					0.09435217482700864
ALTRCAKPF	9	Unmodified	_ALTRCAKPF_					0	0	0			REV__nc|ENSG00000166689|Q6IQ23-3|PLEKHA7	REV__nc|ENSG00000166689|Q6IQ23-3|PLEKHA7	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.28167724609375	2	503.778762	1005.54297	-0.53642	-0.00027024	0.5837	0.00029406	0.047282	2.382E-05	503.7788775374196	22.106	2.3664	20.768	19.646	22.013	-1.3386					123	57	3	0	0	0	0.69123	1	327	327		20.947	0.4651	1	168480	+		1678	27121	1245	1246	2314	2314					0.04042124153625082
ALTRVNKVF	9	Unmodified	_ALTRVNKVF_					0	0	0			REV__ENST00000251722.10_1_2:234463159-234465559:-|nuORF	REV__ENST00000251722.10_1_2:234463159-234465559:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	524.317138671875	2	524.319109	1046.62366	-0.76442	-0.0004008	-0.11055	-5.7962E-05	-0.87497	-0.00045876	524.3190862553206	40.456	1.305	40.456	40.2	41.505	0					93	28	7	0	0	0	0.079296	1	2452	2452		102.77	15.019	1	5753900	+		1679	23865	1246	1247	2315	2315					0.10221728468172842
ALTSCIRL	8	Unmodified	_ALTSCIRL_					0	0	0			REV__KIF26B-SMYD3|3|fusion	REV__KIF26B-SMYD3|3|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	438.7511901855469	2	438.752213	875.489873	-1.0336	-0.00045351	-3.1339	-0.001375	-4.1675	-0.0018285	438.75073825685286	93.031	1.2366	91.069	90.698	91.935	-1.9617					36	24	2	0	0	0	0.57878	1	5942	5942		68.485	2.6815	1	245410	+		1680	28337	1247	1248	2316	2316					0.047147463709507065
ALTSLLKTV	9	Unmodified	_ALTSLLKTV_					0	0	0		ENST00000565642.5_1_16:71777395-71799448:-|nuORF;AP1G1|p.N739Kfs*28|1|0.05|ENSG00000166747|chr16:71738993-71738994|-/C|frameshift_variant;ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.7902526855469	2	473.302593	944.590633	-0.99483	-0.00047086	-1.7306	-0.0008191	-2.7254	-0.00129	473.3016759330806	103.65	0.29789	103.65	103.51	103.81	0					11	6	3	0	0	0	0.027441	1	11599	11599		58.782	14.665	1	282260			1681	98	1248	1249	2317	2317					0.11612101625462401
ALTSLLKTV	9	Unmodified	_ALTSLLKTV_					0	0	0		ENST00000565642.5_1_16:71777395-71799448:-|nuORF;AP1G1|p.N739Kfs*28|1|0.05|ENSG00000166747|chr16:71738993-71738994|-/C|frameshift_variant;ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	473.302593	944.590633	-0.76987	-0.00036438	0.68892	0.00032607	-0.080958	-3.8318E-05	473.30278762432965	104.1	0.89236	103.52	103.23	104.12	-0.57639	-0.087819	0.00070876	NaN	58.782	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40509			1682	98	1248	1249							0.11612101625462401
ALTSLLKTV	9	Unmodified	_ALTSLLKTV_					0	0	0		ENST00000565642.5_1_16:71777395-71799448:-|nuORF;AP1G1|p.N739Kfs*28|1|0.05|ENSG00000166747|chr16:71738993-71738994|-/C|frameshift_variant;ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	473.302593	944.590633	1.067	0.00050501	-0.95312	-0.00045111	0.11387	5.3894E-05	473.3020704926974	104.99	1.142	103.65	103.26	104.4	-1.3482	0.034226	-0.0008456	NaN	58.782	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53235			1683	98	1248	1249							0.11612101625462401
ALTSLLKTV	9	Unmodified	_ALTSLLKTV_					0	0	0		ENST00000565642.5_1_16:71777395-71799448:-|nuORF;AP1G1|p.N739Kfs*28|1|0.05|ENSG00000166747|chr16:71738993-71738994|-/C|frameshift_variant;ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	473.302593	944.590633	0.48708	0.00023054	-1.4344	-0.0006789	-0.94731	-0.00044836	473.30229814928424	105.64	1.0085	103.63	103.3	104.31	-2.0161	0.014517	-0.0013012	NaN	58.782	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51351			1684	98	1248	1249							0.11612101625462401
ALVAPSRL	8	Unmodified	_ALVAPSRL_					0	0	0			REV__nc|ENSG00000106331|O43316-4|PAX4	REV__nc|ENSG00000106331|O43316-4|PAX4	MULTI-MSMS	OvCa9_classI_Rep4_	4	413.7621765136719	2	413.760895	825.507237	0.06819	2.8214E-05	-0.011834	-4.8964E-06	0.056356	2.3318E-05	413.7607324998981	74.496	1.5427	71.265	70.906	72.449	-3.2308					70	31	4	0	0	0	0.37872	1	5824	5824		92.191	12.74	1	709900	+		1685	17795	1249	1250	2318	2318					0.08750409968274653
ALVAPSRL	8	Unmodified	_ALVAPSRL_					0	0	0			REV__nc|ENSG00000106331|O43316-4|PAX4	REV__nc|ENSG00000106331|O43316-4|PAX4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.7459411621094	2	413.760895	825.507237	1.3439	0.00055604	-0.97196	-0.00040216	0.3719	0.00015388	413.76042712338364	84.656	0.90899	81.993	81.685	82.594	-2.6629					29	18	3	0	0	0	0.028476	1	7103	7103		55.504	5.4797	1	59971	+		1686	17795	1249	1250	2319	2319					0.08750409968274653
ALVAPSRL	8	Unmodified	_ALVAPSRL_					0	0	0			REV__nc|ENSG00000106331|O43316-4|PAX4	REV__nc|ENSG00000106331|O43316-4|PAX4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	413.760895	825.507237	0.30698	0.00012702	0.0084405	3.4923E-06	0.31542	0.00013051	413.76078814015256	83.495	1.4566	81.897	81.594	83.051	-1.5988	-0.0481	0.00045071	NaN	55.504	39	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43830	+		1687	17795	1249	1250							0.08750409968274653
ALVAPSRL	8	Unmodified	_ALVAPSRL_					0	0	0			REV__nc|ENSG00000106331|O43316-4|PAX4	REV__nc|ENSG00000106331|O43316-4|PAX4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	413.760895	825.507237	0.54068	0.00022371	-0.33455	-0.00013842	0.20612	8.5285E-05	413.76062855327547	73.452	1.4647	71.052	70.483	71.947	-2.3999	-0.1066	-7.8392E-05	NaN	92.191	73	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219020	+		1688	17795	1249	1250							0.08750409968274653
ALVATLPGVTT	11	Unmodified	_ALVATLPGVTT_					0	0	0		ENST00000467451.1_1_X:153196080-153197612:-|nuORF	ENST00000467451.1_1_X:153196080-153197612:-|nuORF	ENST00000467451.1_1_X:153196080-153197612:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	521.8116455078125	2	521.810782	1041.60701	0.66684	0.00034797	3.6814	0.001921	4.3482	0.002269	521.8125550496435	68.201	4.7433	65.386	65.063	69.806	-2.8144					153	94	3	0	0	0	0.65947	1	3006	3006		39.253	5.0803	1	529900			1689	12312	1250	1251	2320	2320					0.0878718279154782
ALVCLSVTVF	10	Unmodified	_ALVCLSVTVF_					0	0	0		nc|ENSG00000135472|Q9BWQ8-2|FAIM2;ENSG00000135472|ENST00000320634|FAIM2	nc|ENSG00000135472|Q9BWQ8-2|FAIM2	nc|ENSG00000135472|Q9BWQ8-2|FAIM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2581787109375	2	526.296453	1050.57835	-1.0058	-0.00052934	3.4403	0.0018106	2.4345	0.0012813	526.2986441215404	41.93	0.5185	41.93	41.637	42.156	0					20	9	3	0	0	0	0.026871	1	2680	2680		37.159	5.2042	1	154020			1690	4382	1251	1252	2321	2321					0.05508741890798774
ALVDHTPYL	9	Unmodified	_ALVDHTPYL_					0	0	0		VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant;nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;ENST00000513016.5_1_5:82832752-82876250:+|nuORF	VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant	VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	514.7755737304688	2	514.7742	1027.53385	1.564	0.00080512	0.65526	0.00033731	2.2193	0.0011424	514.774405222112	92.151	0.80032	92.151	91.92	92.721	0					37	18	3	0	0	0	0.17908	1	9949	9949		79.939	22.128	1	2358300			1691	1099	1252	1253	2322	2322					0.021180540689329064
ALVDHVAEL	9	Unmodified	_ALVDHVAEL_					0	0	0		ENSG00000136286|ENST00000258787|MYO1G;MYO1G|p.N590Kfs*17|1|0.22|ENSG00000136286|chr7:44967617-44967618|-/C|frameshift_variant;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENST00000483585.5_1_7:45006053-45011824:-|nuORF;nc|ENSG00000136286|B0I1T2-3|MYO1G;ENST00000463516.5_1_7:45009010-45014805:-|nuORF;ENST00000480503.5_1_7:45008844-45011824:-|nuORF	ENSG00000136286|ENST00000258787|MYO1G	ENSG00000136286|ENST00000258787|MYO1G	MULTI-MSMS	OvCa99_classI_Rep5	1	483.7682800292969	2	483.766374	965.518196	1.474	0.00071306	1.1776	0.00056966	2.6515	0.0012827	483.76670754658716	91.23	0.69271	91.23	90.976	91.668	0					36	16	3	0	0	0	0.098892	1	9817	9817		97.473	28.988	1	2210200			1692	4482	1253	1254	2323	2323					0.03405767551907957
ALVDQRELYL	10	Unmodified	_ALVDQRELYL_					0	0	0		ENST00000561840.1_2_16:88923580-88926055:+|nuORF;ENST00000565309.1_1_16:88925068-88926212:+|nuORF;ENST00000564547.1_1_16:88923507-88925305:+|nuORF;ENSG00000167515|ENST00000696289|TRAPPC2L;nc|ENSG00000167515|Q9UL33|TRAPPC2L	ENST00000561840.1_2_16:88923580-88926055:+|nuORF	ENST00000561840.1_2_16:88923580-88926055:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	610.3374633789062	2	610.337695	1218.66084	-1.5322	-0.00093514	0.60907	0.00037174	-0.9231	-0.0005634	610.3379654740689	108.37	0.91106	106.64	106.42	107.33	-1.7256					42	17	3	0	0	0	0.53396	2	9930	9918;9930		50.034	7.1692	1	216300			1693	6794	1254	1255	2324;2325	2325					0.06025355223300721
ALVDQRELYL	10	Unmodified	_ALVDQRELYL_					0	0	0		ENST00000561840.1_2_16:88923580-88926055:+|nuORF;ENST00000565309.1_1_16:88925068-88926212:+|nuORF;ENST00000564547.1_1_16:88923507-88925305:+|nuORF;ENSG00000167515|ENST00000696289|TRAPPC2L;nc|ENSG00000167515|Q9UL33|TRAPPC2L	ENST00000561840.1_2_16:88923580-88926055:+|nuORF	ENST00000561840.1_2_16:88923580-88926055:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	610.337695	1218.66084	2.3242	0.0014186	-0.3011	-0.00018377	2.0231	0.0012348	610.337392342245	106.63	0.44461	106.63	106.36	106.81	0	-0.034453	0.0008385	NaN	50.034	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	626740			1694	6794	1254	1255							0.06025355223300721
ALVDQRELYL	10	Unmodified	_ALVDQRELYL_					0	0	0		ENST00000561840.1_2_16:88923580-88926055:+|nuORF;ENST00000565309.1_1_16:88925068-88926212:+|nuORF;ENST00000564547.1_1_16:88923507-88925305:+|nuORF;ENSG00000167515|ENST00000696289|TRAPPC2L;nc|ENSG00000167515|Q9UL33|TRAPPC2L	ENST00000561840.1_2_16:88923580-88926055:+|nuORF	ENST00000561840.1_2_16:88923580-88926055:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	610.337695	1218.66084	-0.46123	-0.00028151	-0.012284	-7.4976E-06	-0.47352	-0.00028901	610.337601310392	107.03	0.97901	106.72	106.42	107.4	-0.30836	0.053512	0.0011911	NaN	50.034	47	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178500			1695	6794	1254	1255							0.06025355223300721
ALVDQRELYL	10	Unmodified	_ALVDQRELYL_					0	0	0		ENST00000561840.1_2_16:88923580-88926055:+|nuORF;ENST00000565309.1_1_16:88925068-88926212:+|nuORF;ENST00000564547.1_1_16:88923507-88925305:+|nuORF;ENSG00000167515|ENST00000696289|TRAPPC2L;nc|ENSG00000167515|Q9UL33|TRAPPC2L	ENST00000561840.1_2_16:88923580-88926055:+|nuORF	ENST00000561840.1_2_16:88923580-88926055:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	610.337695	1218.66084	1.6851	0.0010285	-1.9097	-0.0011656	-0.22465	-0.00013711	610.3364002752817	107.87	0.83871	106.67	106.43	107.27	-1.1978	0.0042907	-0.0011251	NaN	50.034	42	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221570			1696	6794	1254	1255							0.06025355223300721
ALVIGLSVL	9	Unmodified	_ALVIGLSVL_					0	0	0			REV__ENST00000381486.6_1_2:11706770-11716547:+|nuORF	REV__ENST00000381486.6_1_2:11706770-11716547:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.7590026855469	2	442.794404	883.574254	0.3047	0.00013492	-0.50084	-0.00022177	-0.19614	-8.6849E-05	442.7940543024392	96.479	0.7532	94.053	93.811	94.564	-2.4256					21	14	3	0	0	0	0.027462	1	8562	8562		25.45	0	1	34106	+		1697	25198	1255	1256	2326	2326					0.12781020459362935
ALVLPRVLD	9	Unmodified	_ALVLPRVLD_					0	0	0		ENSG00000183479|ENST00000370231|TREX2;nc|ENSG00000183479|Q9BQ50-1|TREX2	ENSG00000183479|ENST00000370231|TREX2	ENSG00000183479|ENST00000370231|TREX2	MULTI-MSMS	OvCa9_classI_Rep2	2	498.31573486328125	2	498.316035	994.617516	-0.044391	-2.2121E-05	-0.21861	-0.00010894	-0.263	-0.00013106	498.3157300992715	110.05	1.7303	109.88	109.41	111.14	-0.17236					105	34	7	0	0	0	0.44294	1	10331	10331		47.916	1.9636	1	1087000			1698	8077	1256	1257	2327	2327					0.11999210236660929
ALVLSVRLA	9	Unmodified	_ALVLSVRLA_					0	0	0			REV__nc|ENSG00000169682|Q9H2V7-5|SPNS1	REV__nc|ENSG00000169682|Q9H2V7-5|SPNS1	MULTI-MSMS	OvCa9_classI_Rep2	2	471.31024169921875	2	471.310752	940.606951	-1.3467	-0.0006347	0.9748	0.00045943	-0.37187	-0.00017526	471.31115558776486	33.805	2.3785	31.096	30.823	33.201	-2.7097					116	47	5	0	0	0	0.46377	1	1306	1306		45.952	8.7928	1	1913400	+		1699	27719	1257	1258	2328	2328					0.13427227582235446
ALVLVWVEL	9	Unmodified	_ALVLVWVEL_					0	0	0			REV__ENST00000485934.1_1_9:116136757-116139050:-|nuORF	REV__ENST00000485934.1_1_9:116136757-116139050:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.2673950195312	2	521.320786	1040.62702	2.4786	0.0012922	-2.5416	-0.001325	-0.062971	-3.2828E-05	521.3197901896884	87.982	0.3743	87.982	87.838	88.212	0					11	8	2	0	0	0	0.027449	1	9371	9371		40.573	20.576	1	185160	+		1700	23814	1258	1259	2329	2329					0.10832978522171288
ALVMKFLPFSL	11	Unmodified	_ALVMKFLPFSL_					0	0	0			REV__nc|ENSG00000104866|O75864-2|PPP1R37	REV__nc|ENSG00000104866|O75864-2|PPP1R37	MULTI-MSMS	OvCa9_classI_Rep2	2	633.369140625	2	633.369952	1264.72535	-4.5141	-0.0028591	3.2944	0.0020866	-1.2197	-0.00077254	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.71498	1	15529	15529		24.519	0.99649	1	369460	+		1701	25619	1259	1260	2330	2330					0.10357838775735217
ALVPIWGEQI	10	Unmodified	_ALVPIWGEQI_					0	0	0			REV__ENST00000262676.9_2_1:51787456-51796919:-|nuORF	REV__ENST00000262676.9_2_1:51787456-51796919:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	563.3208618164062	2	563.318774	1124.623	-3.8795	-0.0021854	3.8788	0.002185	-0.00068761	-3.8734E-07	563.3208339373161	155.36	0.8447	155.13	154.8	155.64	-0.22697					43	26	2	0	0	0	0.66721	1	15845	15845		34.173	7.4796	1	63890	+		1702	23983	1260	1261	2331	2331					0.06566889028476908
ALVPLSLLLL	10	Unmodified	_ALVPLSLLLL_					0	0	0			REV__ENSG00000198804|ENST00000361624|MT-CO1	REV__ENSG00000198804|ENST00000361624|MT-CO1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.3123779296875	2	526.359911	1050.70527	-0.096298	-5.0687E-05	3.2746	0.0017236	3.1783	0.0016729	526.361621412079	57.369	0.30155	57.369	57.264	57.566	0					21	6	4	0	0	0	0.027048	1	4804	4804		25.45	7.1258	1	2357500	+		1703	23066	1261	1262	2332	2332					0.18194411107424457
ALVQARLV	8	Unmodified	_ALVQARLV_					0	0	0			REV__ENSG00000142233|ENST00000270235|NTN5	REV__ENSG00000142233|ENST00000270235|NTN5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	435.2645263671875	2	435.281995	868.549437	-0.6219	-0.0002707	3.9132	0.0017033	3.2913	0.0014326	435.2837802315083	73.205	0.33914	69.809	69.64	69.979	-3.3961					11	6	2	0	0	0	0.028476	1	5653	5653		19.36	1.0356	1	22732	+		1704	19777	1262	1263	2333	2333					0.10990385376658196
ALVQNHDW	8	Unmodified	_ALVQNHDW_					0	0	0		ENST00000435844.3_2_20:18548090-18550131:+|nuORF	ENST00000435844.3_2_20:18548090-18550131:+|nuORF	ENST00000435844.3_2_20:18548090-18550131:+|nuORF	MSMS	OvCa9_classI_Rep2	2	491.7435607910156	2	491.740691	981.466829	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.06	1	124.82	124.32	125.32	-0.2359								0	0	0	0.30129	1	12174	12174		33.516	0	1				1705	11869	1263	1264	2334	2334					-0.024645564221486893
ALVRKLPAN	9	Unmodified	_ALVRKLPAN_					0	0	0			REV__ENSG00000170832|ENST00000300896|USP32	REV__ENSG00000170832|ENST00000300896|USP32	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.3384094238281	2	491.313826	980.613099	1.6165	0.0007942	1.0301	0.00050613	2.6466	0.0013003	491.31432848833276	126.21	0.4255	126.21	126.04	126.46	0					16	8	2	0	0	0	0.027462	1	14583	14583		17.365	0	1	260660	+		1706	21564	1264	1265	2335	2335					0.12201745813740672
ALVRRVADD	9	Unmodified	_ALVRRVADD_					0	0	0			REV__nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1	REV__nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7886657714844	2	507.788173	1013.56179	-0.71966	-0.00036543	0.16666	8.4628E-05	-0.553	-0.00028081	507.78818211844305	46.857	1.6349	44.147	43.646	45.281	-2.7097					89	32	4	0	0	0	0.50149	1	2818	2818		42.396	1.618	1	755080	+		1707	23126	1265	1266	2336	2336					0.05555377049040544
ALVSFRLTSL	10	Unmodified	_ALVSFRLTSL_					0	0	0			REV__ENST00000511044.1_1_5:141242715-141245657:-|nuORF	REV__ENST00000511044.1_1_5:141242715-141245657:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8290405273438	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.6349	1	11783	11783		37.812	3.639	1	308210	+		1708	20478	1266	1267	2337	2337					0.10094577919812764
ALVSSLHLL	9	Unmodified	_ALVSSLHLL_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	OvCa99_classI_Rep5	1	476.79644775390625	2	476.794935	951.575317	0.81344	0.00038784	1.3631	0.00064991	2.1765	0.0010377	476.79537975932556	114.89	0.55975	114.89	114.65	115.21	0					24	11	3	0	0	0	0.11171	1	13116	13116		94.006	33.712	1	260400			1709	7955	1267	1268	2338	2338					0.09759234828288754
ALVVQVAEA	9	Unmodified	_ALVVQVAEA_					0	0	0		HEXB-UBA6|1|fusion;ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF;ENSG00000049860|ENST00000261416|HEXB	HEXB-UBA6|1|fusion	HEXB-UBA6|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	450.2680969238281	2	450.263468	898.512382	2.0054	0.00090296	0.72634	0.00032705	2.7318	0.00123	450.26372275591586	98.182	1.0231	98.182	97.438	98.461	0					39	23	3	0	0	0	0.019133	1	10814	10814		148.04	28.486	1	2622600			1710	14480	1268	1269	2339	2339					0.05906669040234647
ALVYDAIKV	9	Unmodified	_ALVYDAIKV_					0	0	0		ENST00000561309.1_1_15:65677198-65678348:-|nuORF	ENST00000561309.1_1_15:65677198-65678348:-|nuORF	ENST00000561309.1_1_15:65677198-65678348:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.2710876464844	2	496.294768	990.574983	2.2573	0.0011203	-0.069272	-3.4379E-05	2.188	0.0010859	496.29439783841974	106.2	0.61346	106.2	105.92	106.54	0					29	13	3	0	0	0	0.027448	1	11978	11978		27.882	0	1	545390			1711	13751	1269	1270	2340	2340					0.0793181510841805
ALWAGLLTL	9	Unmodified	_ALWAGLLTL_					0	0	0		ENSG00000104921|ENST00000597921|FCER2	ENSG00000104921|ENST00000597921|FCER2	ENSG00000104921|ENST00000597921|FCER2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.22796630859375	2	479.292028	956.569503	-0.18293	-8.7679E-05	-3.1718	-0.0015202	-3.3547	-0.0016079	479.29058956072396	105.89	0.61215	103.87	103.7	104.31	-2.0161					22	11	3	0	0	0	0.027462	1	9660	9660		8.2313	0	1	49864			1712	2407	1270	1271	2341	2341					0.08948136316621458
ALWDKLFNL	9	Unmodified	_ALWDKLFNL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;ENST00000557005.1_1_14:64469755-64489638:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OvCa99_classI_Rep5	1	560.3151245117188	2	560.313492	1118.61243	1.5308	0.00085771	0.55942	0.00031345	2.0902	0.0011712	560.3136276576943	154.02	0.83334	154.02	153.74	154.57	0					47	16	4	0	0	0	0.22035	2	18034	18034;18059		72.879	14.097	1	733700			1713	1212	1271	1272	2342;2343	2342					0.057869063740326965
ALWGVGSAL	9	Unmodified	_ALWGVGSAL_					0	0	0		ENSG00000110057|ENST00000227471|UNC93B1	ENSG00000110057|ENST00000227471|UNC93B1	ENSG00000110057|ENST00000227471|UNC93B1	MULTI-SECPEP	OvCa99_classI_Rep5	1	436.764892578125	2	437.245078	872.475603	0.37613	0.00016446	0.030388	1.3287E-05	0.40652	0.00017775	437.2448158887148	53.715	1.157	53.715	53.475	54.632	0					50	27	3	0	0	0	0.027441	1	4409	4409		42.474	8.9589	1	1024200			1714	2749	1272	1273	2344	2344					0.034264172143252836
ALWLQSVALV	10	Unmodified	_ALWLQSVALV_					0	0	0			REV__ENSG00000232070|ENST00000556585|TMEM253	REV__ENSG00000232070|ENST00000556585|TMEM253	MULTI-MSMS	OvCa9_classI_Rep2	2	550.3267211914062	2	550.329142	1098.64373	-0.8792	-0.00048385	-4.099	-0.0022558	-4.9782	-0.0027397	550.3268942315257	85.56	1.6104	84.069	83.505	85.115	-1.4907					109	31	5	0	0	0	0.39172	1	7425	7425		69.628	11.816	1	1857300	+		1715	23392	1273	1274	2345	2345					0.09835479408116043
ALWRPLLL	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ALWRPLLL_					1	0	0		chr11:57368437-57369361|144|11.76|0.52|4.49|+|1|P2RX3,P2RX3|1	chr11:57368437-57369361|144|11.76|0.52|4.49|+|1|P2RX3,P2RX3|1	chr11:57368437-57369361|144|11.76|0.52|4.49|+|1|P2RX3,P2RX3|1	MULTI-MSMS	OvCa9_classI_Rep2	2	512.3181762695312	2	512.32112	1022.62769	-1.0601	-0.00054311	-3.2643	-0.0016724	-4.3244	-0.0022155	512.3193628969464	54.362	1.9918	51.548	51.075	53.067	-2.8139					110	39	4	0	0	0	0.61758	1	3702	3702		60.294	8.9585	1	832500			1716	293	1274	1275	2346	2346					0.11727817961889286
ALWWRRRWTR	10	Unmodified	_ALWWRRRWTR_					0	0	0		ENST00000280987.8_1_14:35515634-35522487:+|nuORF	ENST00000280987.8_1_14:35515634-35522487:+|nuORF	ENST00000280987.8_1_14:35515634-35522487:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	496.79833984375	3	496.281211	1485.8218	-0.95032	-0.00047162	3.2313	0.0016036	2.281	0.001132	496.2829090407014	55.016	0.74969	52.202	51.922	52.671	-2.8139					33	14	3	0	0	0	0.02739	1	3816	3816		4.3388	0	1	31828			1717	10045	1275	1276	2347	2347					0.09832587170512852
ALWYRKTNLFL	11	Unmodified	_ALWYRKTNLFL_					0	0	0		ENST00000466194.1_1_1:26801759-26802014:+|nuORF	ENST00000466194.1_1_1:26801759-26802014:+|nuORF	ENST00000466194.1_1_1:26801759-26802014:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	475.6092224121094	3	475.606478	1423.79761	0.37352	0.00017765	3.195	0.0015196	3.5685	0.0016972	475.6080683301692	81.355	3.0767	79.032	78.697	81.774	-2.3226					187	62	5	0	0	0	0.70315	1	4544	4544		28.577	2.5133	1	5738700			1718	12286	1276	1277	2348	2348					0.1026588917366098
ALYDEVRTV	9	Unmodified	_ALYDEVRTV_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;ENST00000577300.1_1_18:2703698-2706469:+|nuORF	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	OvCa99_classI_Rep5	1	533.785888671875	2	533.282389	1064.55022	2.0302	0.0010827	0.3377	0.00018009	2.3679	0.0012627	533.2824645961149	85.457	0.49734	85.457	85.252	85.75	0					27	11	3	0	0	0	0.07097	2	8975	8966;8975		106.68	48.453	1	1418000			1719	2189	1277	1278	2349;2350	2350					0.02053135235018999
ALYEAKRQK	9	Unmodified	_ALYEAKRQK_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48154319-48165696:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8189086914062	2	553.819473	1105.62439	0.35055	0.00019414	-0.44692	-0.00024751	-0.09637	-5.3372E-05	553.8191095428485	32.261	1.2872	29.551	29.233	30.52	-2.7097					61	25	4	0	0	0	0.047062	5	1048	1048;1054;1060;1073;1098		120.62	28.636	1	380430			1720	863	1278	1279	2351;2352;2353;2354;2355	2351					0.07580523117235316
ALYGVVNVK	9	Unmodified	_ALYGVVNVK_					0	0	0		ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	MULTI-MSMS	OvCa9_classI_Rep3	3	481.78802490234375	2	481.78711	961.559667	-0.86239	-0.00041549	0.23476	0.0001131	-0.62763	-0.00030239	481.7871035716932	82.393	0.64656	80.097	79.735	80.381	-2.2963					21	12	2	0	0	0	0.055688	1	4635	4635		115.46	52.153	1	891760			1721	4355	1279	1280	2356	2356					0.07734948311224343
ALYGVVNVK	9	Unmodified	_ALYGVVNVK_					0	0	0		ENSG00000135108|ENST00000622495|FBXO21;nc|ENSG00000135108|O94952|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	ENSG00000135108|ENST00000622495|FBXO21	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.7877197265625	2	481.78711	961.559667	-0.5159	-0.00024855	0.14048	6.7683E-05	-0.37542	-0.00018087	481.78710355700105	82.783	0.68329	80.1	79.782	80.466	-2.6829					25	13	2	0	0	0	0.055688	2	6849	6849;6860		115.46	54.487	1	775940			1722	4355	1279	1280	2357;2358	2357					0.07734948311224343
ALYKKILKY	9	Unmodified	_ALYKKILKY_					0	0	0		ENSG00000139832|ENST00000267328|RAB20	ENSG00000139832|ENST00000267328|RAB20	ENSG00000139832|ENST00000267328|RAB20	MULTI-MSMS	OvCa9_classI_Rep3	3	570.364501953125	2	570.362985	1138.71142	0.6132	0.00034975	-0.74106	-0.00042267	-0.12786	-7.2926E-05	570.3624601174047	66.945	1.9604	64.058	63.78	65.74	-2.8873					102	38	5	0	0	0	0.21395	4	2796	2783;2796;2803;2823		73.975	38.356	1	407820			1723	4806	1280	1281	2359;2360;2361;2362	2360					0.1476092933894506
ALYKKILKY	9	Unmodified	_ALYKKILKY_					0	0	0		ENSG00000139832|ENST00000267328|RAB20	ENSG00000139832|ENST00000267328|RAB20	ENSG00000139832|ENST00000267328|RAB20	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	570.362985	1138.71142	1.4266	0.00081368	-2.2332	-0.0012737	-0.80661	-0.00046006	570.3615899403351	67.606	1.3741	64.116	63.888	65.262	-3.4902	0.028823	-0.0013349	NaN	73.975	76	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	277310			1724	4806	1280	1281							0.1476092933894506
ALYLNTSIKK	10	Unmodified	_ALYLNTSIKK_					0	0	0			REV__ENST00000519884.1_1_8:22210459-22213015:+|nuORF	REV__ENST00000519884.1_1_8:22210459-22213015:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8427734375	2	575.845156	1149.67576	-0.33973	-0.00019563	-2.5857	-0.0014889	-2.9254	-0.0016846	575.8433458482052	142.38	3.7668	140.93	139.05	142.82	-1.4532					179	72	3	0	0	0	0.66721	1	14011	14011		34.173	3.6689	1	165140	+		1725	22901	1281	1282	2363	2363					0.10690847091291289
ALYQLSVLL	9	Unmodified	_ALYQLSVLL_					0	0	0			REV__ENST00000511049.5_1_5:96066505-96071897:+|nuORF	REV__ENST00000511049.5_1_5:96066505-96071897:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	510.3100280761719	2	510.310418	1018.60628	0.95439	0.00048704	-1.1564	-0.00059014	-0.20204	-0.00010311	510.3097290146053	127.58	1.4149	126.49	126.15	127.57	-1.0933					79	27	4	0	0	0	0.14998	1	10020	10020		84.916	17.422	1	805790	+		1726	26952	1282	1283	2364	2364					0.09772388142516775
ALYSGVHKK	9	Unmodified	_ALYSGVHKK_					0	0	0		ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.7898254394531	2	501.790184	1001.56581	0.18165	9.1152E-05	-0.49812	-0.00024995	-0.31646	-0.0001588	501.7897348150944	32.473	0.94865	29.777	29.403	30.352	-2.6954					46	23	3	0	0	0	0.5811	2	770	770;781		34.173	5.0025	1	37577			1727	2869	1283	1284	2365;2366	2365					0.06509466542752307
AMAASPHAV	9	Unmodified	_AMAASPHAV_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MSMS	OvCa99_classI_Rep5	1	427.7129821777344	2	427.713088	853.411622	0.60884	0.00026041	-0.4518	-0.00019324	0.15705	6.7172E-05	427.71281900315375	45.911	0.61718	45.911	45.667	46.284	0					29	13	3	0	0	0	0.22913	1	3211	3211		71.378	5.5747	1	830080			1728	7709	1284	1285	2367	2367					-0.020946862142636746
AMAFWAGGS	9	Unmodified	_AMAFWAGGS_					0	0	0		ENST00000369040.7_1_10:123673361-123687488:-|nuORF	ENST00000369040.7_1_10:123673361-123687488:-|nuORF	ENST00000369040.7_1_10:123673361-123687488:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	448.79949951171875	2	449.199813	896.385073	0.84281	0.00037859	-2.338	-0.0010502	-1.4952	-0.00067165	449.1975649844026	111.89	0.63216	110.38	110.11	110.74	-1.5111					22	11	3	0	0	0	0.027462	1	10325	10325		25.45	10.786	1	17857			1729	10889	1285	1286	2368	2368					-0.06726375105597526
AMAFWAGGS	9	Unmodified	_AMAFWAGGS_					0	0	0		ENST00000369040.7_1_10:123673361-123687488:-|nuORF	ENST00000369040.7_1_10:123673361-123687488:-|nuORF	ENST00000369040.7_1_10:123673361-123687488:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	449.199813	896.385073	2.7733	0.0012458	-7.0426	-0.0031635	-4.2693	-0.0019178	449.19641765936086	110.67	0.9388	110.53	110.09	111.03	-0.13961	0.13914	-0.00071077	NaN	25.45	22	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7023.9			1730	10889	1285	1286							-0.06726375105597526
AMAFWAGGS	9	Unmodified	_AMAFWAGGS_					0	0	0		ENST00000369040.7_1_10:123673361-123687488:-|nuORF	ENST00000369040.7_1_10:123673361-123687488:-|nuORF	ENST00000369040.7_1_10:123673361-123687488:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	449.199813	896.385073	1.3511	0.00060693	-4.7382	-0.0021284	-3.387	-0.0015214	449.19724289224064	111.37	0.79228	110.26	109.85	110.65	-1.1038	-0.12664	0.0013595	NaN	25.45	18	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23012			1731	10889	1285	1286							-0.06726375105597526
AMAKIQAKI	9	Unmodified	_AMAKIQAKI_					0	0	0		nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4;ENSG00000115310|ENST00000337526|RTN4;nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-5|RTN4;ENST00000485749.1_1_2:55200294-55201100:-|nuORF	nc|ENSG00000115310|Q9NQC3-4|RTN4	nc|ENSG00000115310|Q9NQC3-4|RTN4	MULTI-MSMS	OvCa99_classI_Rep5	1	487.29766845703125	2	487.296788	972.579022	-0.5383	-0.00026231	0.16901	8.2358E-05	-0.36929	-0.00017995	487.2967490593688	55.515	0.73915	55.515	55.193	55.932	0					36	17	3	0	0	0	0.068524	1	4549	4549		108.09	20.333	1	3408100			1732	3085	1286	1287	2369	2369					0.09163581330483339
AMAKTLQQV	9	Unmodified	_AMAKTLQQV_					0	0	0		TSHZ3|p.H377Pfs*10|1|0.08|ENSG00000121297|chr19:31278663-31278663|T/-|frameshift_variant;TSHZ3|p.Q399Gfs*41|1|0.05|ENSG00000121297|chr19:31278597-31278598|TG/-|frameshift_variant;ENSG00000121297|ENST00000240587|TSHZ3	TSHZ3|p.H377Pfs*10|1|0.08|ENSG00000121297|chr19:31278663-31278663|T/-|frameshift_variant	TSHZ3|p.H377Pfs*10|1|0.08|ENSG00000121297|chr19:31278663-31278663|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	495.2767333984375	2	495.276052	988.537551	-0.030112	-1.4914E-05	0.57413	0.00028435	0.54402	0.00026944	495.2759778328666	58.293	0.62834	58.293	58.027	58.655	0					47	14	4	0	0	0	0.10502	1	4937	4937		95.815	0	1	2309500			1733	3477	1287	1288	2370	2370					0.04282400571173639
AMALFHGKFI	10	Unmodified	_AMALFHGKFI_					0	0	0		nc|ENSG00000289720|Q96J02-3|ITCH;ENSG00000078747|ENST00000374864|ITCH;nc|ENSG00000289720|Q96J02|ITCH;ENST00000518683.5_1_8:87410815-87460532:+|nuORF;nc|ENSG00000123124|Q9H0M0-6|WWP1;nc|ENSG00000123124|Q9H0M0-3|WWP1;ENSG00000123124|ENST00000517970|WWP1	nc|ENSG00000289720|Q96J02-3|ITCH;ENST00000518683.5_1_8:87410815-87460532:+|nuORF	nc|ENSG00000289720|Q96J02-3|ITCH	MULTI-MSMS	OvCa9_classI_Rep2	2	567.810791015625	2	567.810062	1133.60557	0.22441	0.00012742	1.6958	0.00096291	1.9202	0.0010903	567.8109861589273	113.4	1.1856	113.27	112.82	114.01	-0.12174					56	23	3	0	0	0	0.64063	1	10767	10767		37.159	5.6293	1	241960			1734	1600;3573	1288	1289	2371	2371					0.044112702218399136
AMALPRTL	8	Unmodified	_AMALPRTL_					0	0	0		ENSG00000166886|ENST00000300131|NAB2;nc|ENSG00000166886|Q15742-3|NAB2;nc|ENSG00000166886|Q15742-2|NAB2	ENSG00000166886|ENST00000300131|NAB2	ENSG00000166886|ENST00000300131|NAB2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	437.7051696777344	2	436.754756	871.494958	1.4684	0.00064134	-3.542	-0.001547	-2.0735	-0.00090562	436.75282081538916	68.041	0.24087	64.55	64.381	64.622	-3.4902					6	4	2	0	0	0	0.028476	1	5027	5027		9.4706	8.0057	1	12911			1735	6728	1289	1290	2372	2372					0.0540705023360033
AMALPRTL	8	Unmodified	_AMALPRTL_					0	0	0		ENSG00000166886|ENST00000300131|NAB2;nc|ENSG00000166886|Q15742-3|NAB2;nc|ENSG00000166886|Q15742-2|NAB2	ENSG00000166886|ENST00000300131|NAB2	ENSG00000166886|ENST00000300131|NAB2	MULTI-MATCH	OvCa99_classI_Rep5	1		2	436.754756	871.494958	0.50316	0.00021976	-6.1946	-0.0027055	-5.6914	-0.0024858	436.75433679465453	64.463	0.21314	64.463	64.375	64.588	0	-0.043835	-2.1091E-05	NaN	4.6817	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59259			1736	6728	1289	1290							0.0540705023360033
AMANAGPDTN	10	Unmodified	_AMANAGPDTN_					0	0	0		ENSG00000137168|ENST00000373699|PPIL1	ENSG00000137168|ENST00000373699|PPIL1	ENSG00000137168|ENST00000373699|PPIL1	MULTI-MSMS	OvCa99_classI_Rep5	1	481.2069091796875	2	481.205824	960.397095	0.086226	4.1493E-05	0.12935	6.2243E-05	0.21557	0.00010374	481.2056805994545	64.612	0.70054	64.612	64.334	65.034	0					26	16	3	0	0	0	0.44431	1	5881	5881		62.107	4.2961	1	984320			1737	4563	1290	1291	2373	2373					-0.08468803153073168
AMAPAAQGPSV	11	Unmodified	_AMAPAAQGPSV_					0	0	0			REV__nc|ENSG00000160949|Q96HA7-2|TONSL	REV__nc|ENSG00000160949|Q96HA7-2|TONSL	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.82525634765625	2	500.250034	998.485516	1.5983	0.00079957	-3.0513	-0.0015264	-1.453	-0.00072685	500.24833529774435	81.834	0.4481	81.834	81.613	82.061	0					13	10	2	0	0	0	0.025806	1	8462	8462		24.519	6.1948	1	302840	+		1738	20681	1291	1292	2374	2374					-0.01378762842591641
AMAPAAQGPSV	11	Unmodified	_AMAPAAQGPSV_					0	0	0			REV__nc|ENSG00000160949|Q96HA7-2|TONSL	REV__nc|ENSG00000160949|Q96HA7-2|TONSL	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	500.250034	998.485516	0.57997	0.00029013	-3.2445	-0.0016231	-2.6645	-0.0013329	500.24827998670855	84.667	0.85512	82.004	81.639	82.494	-2.6629	0.085152	-0.0001294	NaN	23.523	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33578	+		1739	20681	1291	1292							-0.01378762842591641
AMAVMLYYSN	10	Unmodified	_AMAVMLYYSN_					0	0	0		ENSG00000135953|ENST00000258436|MFSD9	ENSG00000135953|ENST00000258436|MFSD9	ENSG00000135953|ENST00000258436|MFSD9	MULTI-MSMS	OvCa99_classI_Rep5	1	581.76806640625	2	581.767203	1161.51985	0.98359	0.00057222	1.5384	0.00089501	2.522	0.0014672	581.7678883651339	146.79	1.028	146.79	146.47	147.5	0					48	20	3	0	0	0	0.69073	1	17200	17200		31.53	3.4483	1	227170			1740	4438	1292	1293	2375	2375					-0.05444682745996943
AMDVFRAM	8	Unmodified	_AMDVFRAM_					0	0	0		nc|ENSG00000274150|A8MWK0|FADS2B	nc|ENSG00000274150|A8MWK0|FADS2B	nc|ENSG00000274150|A8MWK0|FADS2B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.7561950683594	2	470.722598	939.430643	0.93989	0.00044243	-1.3212	-0.00062191	-0.38129	-0.00017948	470.721866011968	59.993	0.83483	56.563	56.309	57.144	-3.43					21	16	2	0	0	0	0.028476	1	4077	4077		73.975	21.038	1	55898			1741	15372	1293	1294	2376	2376					-0.04149472914866692
AMETHGAHCFN	11	Unmodified	_AMETHGAHCFN_					0	0	0		ENSG00000139410|ENST00000403593|SDSL	ENSG00000139410|ENST00000403593|SDSL	ENSG00000139410|ENST00000403593|SDSL	MULTI-MSMS	OvCa9_classI_Rep4_	4	609.2420654296875	2	609.244957	1216.47536	-0.38791	-0.00023633	-1.3088	-0.00079738	-1.6967	-0.0010337	609.244269428548	117.96	0.94666	116.62	116.37	117.31	-1.3444					30	17	3	0	0	0	0.68021	1	11052	11052		36.447	3.6343	1	85994			1742	4773	1294	1295	2377	2377					-0.12421693839473846
AMETHGAHCFN	11	Unmodified	_AMETHGAHCFN_					0	0	0		ENSG00000139410|ENST00000403593|SDSL	ENSG00000139410|ENST00000403593|SDSL	ENSG00000139410|ENST00000403593|SDSL	MULTI-MATCH	OvCa9_classI_Rep2	2		2	609.244957	1216.47536	-1.53	-0.00093217	0.29333	0.00017871	-1.2367	-0.00075346	609.2449517657428	117.05	0.84075	116.92	116.67	117.51	-0.12869	0.19045	0.0011072	NaN	36.447	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36391			1743	4773	1294	1295							-0.12421693839473846
AMETHGAHCFN	11	Unmodified	_AMETHGAHCFN_					0	0	0		ENSG00000139410|ENST00000403593|SDSL	ENSG00000139410|ENST00000403593|SDSL	ENSG00000139410|ENST00000403593|SDSL	MULTI-MATCH	OvCa9_classI_Rep3	3		2	609.244957	1216.47536	0.91898	0.00055988	-1.9976	-0.001217	-1.0786	-0.00065712	609.2434394451228	117.69	0.94098	116.66	116.39	117.33	-1.0324	-0.075223	-0.0016842	NaN	36.447	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65665			1744	4773	1294	1295							-0.12421693839473846
AMFARLVLN	9	Unmodified	_AMFARLVLN_					0	0	0		chr17:81719344-81719831|117|18.97|0.8|4.57|+|1|TE_info:AluSz6,AluSz6_dup42098,Alu,SINE,donor,-,81719232,81719344|None,SLC25A10|4;ENST00000552839.6_1_12:112403518-112450827:-|nuORF	chr17:81719344-81719831|117|18.97|0.8|4.57|+|1|TE_info:AluSz6,AluSz6_dup42098,Alu,SINE,donor,-,81719232,81719344|None,SLC25A10|4	chr17:81719344-81719831|117|18.97|0.8|4.57|+|1|TE_info:AluSz6,AluSz6_dup42098,Alu,SINE,donor,-,81719232,81719344|None,SLC25A10|4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.3196411132812	2	517.794412	1033.57427	0.35932	0.00018606	-0.97781	-0.0005063	-0.61849	-0.00032025	518.294578931208	114.6	0.41908	113.21	112.89	113.3	-1.3977					10	7	2	0	0	0	0.027462	1	10612	10612		10.866	0	1	11222			1745	395	1295	1296	2378	2378					0.05882697187735175
AMFDKKVQL	9	Unmodified	_AMFDKKVQL_					0	0	0		ENSG00000182253|ENST00000336292|SYNM;nc|ENSG00000182253|O15061-2|SYNM	ENSG00000182253|ENST00000336292|SYNM	ENSG00000182253|ENST00000336292|SYNM	MULTI-MSMS	OvCa99_classI_Rep5	1	540.3016967773438	2	540.299527	1078.5845	1.005	0.000543	2.0961	0.0011325	3.1011	0.0016755	540.3003817532519	74.615	0.63124	74.615	74.249	74.88	0					28	15	2	0	0	0	0.1804	1	7388	7388		79.713	24.936	1	1569200			1746	7984	1296	1297	2379	2379					0.04835260122285945
AMFGKLMTI	9	Unmodified	_AMFGKLMTI_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	OvCa99_classI_Rep5	1	506.273681640625	2	506.271924	1010.52929	2.6485	0.0013409	0.10606	5.3695E-05	2.7545	0.0013945	506.2717294921712	115.75	0.88205	115.75	115.39	116.28	0					31	18	2	0	0	0	0.26076	1	13234	13234		67.494	23.377	1	704230			1747	3504	1297	1298	2380	2380					0.02445130330181655
AMFRSFMPE	9	Unmodified	_AMFRSFMPE_					0	0	0		ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENSG00000099949|ENST00000646124|LZTR1;CRKL-LZTR1|1|fusion;ENST00000498649.1_1_22:21350102-21351129:+|nuORF;ENST00000463909.1_1_22:21349904-21350666:+|nuORF	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.2992553710938	2	558.254262	1114.49397	2.7987	0.0015624	0.54435	0.00030388	3.343	0.0018663	558.2543099606644	121.62	0.468	121.62	121.52	121.99	0					13	9	2	0	0	0	0.027411	1	14023	14023		87.696	29.467	1	45942			1748	680	1298	1299	2381	2381					-0.058695321976301784
AMGIIELWVL	10	Unmodified	_AMGIIELWVL_					0	0	0			REV__ENST00000360689.9_1_14:66208907-66209084:+|nuORF	REV__ENST00000360689.9_1_14:66208907-66209084:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	572.7855224609375	2	572.825378	1143.6362	-0.54432	-0.0003118	-3.6193	-0.0020732	-4.1636	-0.002385	572.8220155306594	103.09	0.7299	100.89	100.57	101.3	-2.1994					15	13	2	0	0	0	0.026523	1	9330	9330		68.787	39.617	1	10212	+		1749	24838	1299	1300	2382	2382					0.0701300381620058
AMHRKKWF	8	Unmodified	_AMHRKKWF_					0	0	0			REV__ENSG00000112195|ENST00000483722|TREML2	REV__ENSG00000112195|ENST00000483722|TREML2	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.8055419921875	2	552.300196	1102.58584	-1.0228	-0.00056488	-1.1202	-0.0006187	-2.143	-0.0011836	552.299670110836	27.156	0.59918	27.156	26.992	27.591	0					19	11	4	0	0	0	0.028476	1	786	786		33.516	9.3128	1	420370	+		1750	18082	1300	1301	2383	2383					0.038649390017098995
AMHSMRIHDN	10	Unmodified	_AMHSMRIHDN_					0	0	0			REV__ENST00000532828.6_1_19:37675880-37676069:-|nuORF	REV__ENST00000532828.6_1_19:37675880-37676069:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	605.8255004882812	2	606.274049	1210.53355	2.7781	0.0016843	3.2806	0.0019889	6.0586	0.0036732	606.2759472297154	90.44	0.19247	90.44	90.269	90.462	0					5	4	2	0	0	0	0.027028	1	9683	9683		24.519	0	1	324150	+		1751	27243	1301	1302	2384	2384					-0.06330012194189294
AMIGFNLQIL	10	Unmodified	_AMIGFNLQIL_					0	0	0		ENST00000560782.2_1_15:54613057-54613198:-|nuORF	ENST00000560782.2_1_15:54613057-54613198:-|nuORF	ENST00000560782.2_1_15:54613057-54613198:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	560.3156127929688	2	560.315177	1118.6158	1.5308	0.00085771	-2.4485	-0.001372	-0.91778	-0.00051425	560.3136276576943	154.02	0.83334	154.02	153.74	154.57	0					47	16	4	0	0	0	0.58282	1	18084	18084		44.117	1.2525	1	733700			1752	13742	1302	1303	2385	2385					0.06123833156402725
AMILKSRGTAK	11	Unmodified	_AMILKSRGTAK_					0	0	0			REV__tr|A0A7D6W185|A0A7D6W185_9CLOTIsochorismatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02240PE=4SV=1	REV__tr|A0A7D6W185|A0A7D6W185_9CLOTIsochorismatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02240PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	588.3480224609375	2	588.350083	1174.68561	-0.31048	-0.00018267	-2.7957	-0.0016449	-3.1062	-0.0018275	588.3483446224303	22.428	0.89597	21.09	20.776	21.672	-1.3386					34	21	2	0	0	0	0.72497	1	310	310		16.007	0.36496	1	26788	+		1753	31880	1303	1304	2386	2386					0.10525711825016515
AMILYYFSL	9	Unmodified	_AMILYYFSL_					0	0	0			REV__ENSG00000175899|ENST00000318602|A2M	REV__ENSG00000175899|ENST00000318602|A2M	MULTI-SECPEP	OvCa9_classI_Rep4_	4	560.3309936523438	2	560.791004	1119.56745	0.94478	0.00052982	-0.93446	-0.00052403	0.010325	5.7902E-06	560.7898515276893	74.831	0.24397	71.6	71.434	71.678	-3.2308					6	4	2	0	0	0	0.027462	1	5873	5873		19.36	1.892	1	9873.3	+		1754	21922	1304	1305	2387	2387					0.012453395165039183
AMIVSGITLL	10	Unmodified	_AMIVSGITLL_					0	0	0			REV__tr|A0A553SUD0|A0A553SUD0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06780PE=4SV=1	REV__tr|A0A553SUD0|A0A553SUD0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06780PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	509.3073425292969	2	509.304278	1016.594	1.041	0.00053016	2.5939	0.0013211	3.6349	0.0018513	509.3057231558449	150.82	1.2108	150.82	150.39	151.6	0					69	23	4	0	0	0	0.71192	1	17653	17653		29.15	2.4566	1	523440	+		1755	31062	1305	1306	2388	2388					0.08637028407838443
AMKERQVSL	9	Unmodified	_AMKERQVSL_					0	0	0			REV__ENST00000557188.1_1_14:36840618-36841095:+|nuORF	REV__ENST00000557188.1_1_14:36840618-36841095:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.8179321289062	2	531.292233	1060.56991	0.73041	0.00038806	-4.4413	-0.0023596	-3.7109	-0.0019715	531.289675709199	138.33	1.1563	136.8	136.6	137.75	-1.5284					41	24	3	0	0	0	0.02744	1	13508	13508		71.877	16.373	1	22726	+		1756	22648	1306	1307	2389	2389					0.042051879741620724
AMKKDPVKK	9	Unmodified	_AMKKDPVKK_					0	0	0		ENST00000406003.2_1_12:10264431-10264902:+|nuORF;nc|ENSG00000197451|Q99729-3|HNRNPAB;nc|ENSG00000197451|Q99729-4|HNRNPAB;nc|ENSG00000197451|Q99729|HNRNPAB;ENSG00000197451|ENST00000358344|HNRNPAB	ENST00000406003.2_1_12:10264431-10264902:+|nuORF	ENST00000406003.2_1_12:10264431-10264902:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	522.8133544921875	2	522.815344	1043.61614	3.6226	0.0018939	-3.8745	-0.0020256	-0.25188	-0.00013169	522.8132523431473	25.845	0.53336	23.136	22.984	23.517	-2.7097					20	12	2	0	0	0	0.55011	1	298	298		37.812	6.2817	1	38144			1757	8715	1307	1308	2390	2390					0.0960725287625337
AMKKSLGLL	9	Unmodified	_AMKKSLGLL_					0	0	0			REV__ENST00000498967.3_2_12:124068190-124068862:-|nuORF	REV__ENST00000498967.3_2_12:124068190-124068862:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	480.7967529296875	2	480.799163	959.583773	-0.37436	-0.00017999	-3.2987	-0.001586	-3.6731	-0.001766	480.7973622689828	116.04	2.9694	115	114.65	117.62	-1.0414					124	59	3	0	0	0	0.56189	1	8657	8657		36.447	8.5645	1	286570	+		1758	26804	1308	1309	2391	2391					0.10236465473246881
AMKLFLKM	8	2 Oxidation (M)	_AM(Oxidation (M))KLFLKM(Oxidation (M))_		AM(1)KLFLKM(1)		AM(50)KLFLKM(50)	0	0	2		ENST00000314970.10_1_4:185580560-185587128:+|nuORF	ENST00000314970.10_1_4:185580560-185587128:+|nuORF	ENST00000314970.10_1_4:185580560-185587128:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.28009033203125	2	507.279749	1012.54494	0.089554	4.5429E-05	0.42335	0.00021476	0.5129	0.00026018	507.279492168154	80.764	2.521	79.069	77.819	80.34	-1.6951					167	49	5	0	0	0	0.66704	1	6828	6828		50.025	12.865	1	1006900			1759	10328	1309	1310	2392	2392		294;295			0.03917416847230015
AMKLFLKM	8	2 Oxidation (M)	_AM(Oxidation (M))KLFLKM(Oxidation (M))_		AM(1)KLFLKM(1)		AM(58)KLFLKM(58)	0	0	2		ENST00000314970.10_1_4:185580560-185587128:+|nuORF	ENST00000314970.10_1_4:185580560-185587128:+|nuORF	ENST00000314970.10_1_4:185580560-185587128:+|nuORF	MSMS	OvCa9_classI_Rep3	3	507.2811584472656	2	507.279749	1012.54494	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.063	1	78.74	78.24	79.24	-2.3226								0	0	0	0.30129	1	4481	4481		57.811	9.8957	1				1760	10328	1309	1310	2393	2393		294;295			0.03917416847230015
AMLFLFRR	8	Unmodified	_AMLFLFRR_					0	0	0			REV__ENST00000413432.2_1_2:242381259-242381301:+|nuORF	REV__ENST00000413432.2_1_2:242381259-242381301:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.7855224609375	2	527.304947	1052.59534	-1.933	-0.0010193	3.8501	0.0020302	1.9171	0.0010109	527.3069587368061	50.572	1.8871	47.399	46.839	48.726	-3.1734					93	36	5	0	0	0	0.028476	1	2866	2866		29.842	0.69198	1	707160	+		1761	25512	1310	1311	2394	2394					0.07114707287246347
AMMQLKKQPE	10	Unmodified	_AMMQLKKQPE_					0	0	0			REV__ENST00000266746.10_1_12:100561203-100566904:-|nuORF	REV__ENST00000266746.10_1_12:100561203-100566904:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.8826904296875	3	401.878993	1202.61515	0.81188	0.00032628	2.32	0.00093234	3.1318	0.0012586	401.8794443859115	51.809	0.76313	51.809	51.627	52.39	0					26	17	2	0	0	0	0.026665	1	4096	4096		38.754	12.862	1	544240	+		1762	24045	1311	1312	2395	2395					0.02194670445032898
AMMVLIGNEL	10	Unmodified	_AMMVLIGNEL_					0	0	0			REV__ENSG00000170920|ENST00000305444|OR7G3	REV__ENSG00000170920|ENST00000305444|OR7G3	MULTI-MSMS	OvCa9_classI_Rep3	3	545.7841796875	2	545.785395	1089.55624	1.2649	0.00069035	-1.7625	-0.00096193	-0.49759	-0.00027158	545.7840712809303	112.68	1.3472	111.6	111.32	112.66	-1.0753					69	26	5	0	0	0	0.48198	1	8256	8256		56.721	1.9447	1	305850	+		1763	21576	1312	1313	2396	2396					0.015041941506979128
AMNARPHKV	9	Unmodified	_AMNARPHKV_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|429|217.16|0.0|24.37|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000422644.2_1_X:73693403-73693721:-|nuORF;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;ENST00000452488.1_1_2:41383770-41384067:+|nuORF;chr12:54281896-54283827|429|183.38|0.0|24.13|+|ENST00000679273|HNRNPA1,HNRNPA1;ENST00000484852.1_1_3:147884522-147885023:-|nuORF;ENST00000521638.1_1_5:153717591-153717873:-|nuORF;ENST00000440547.1_1_2:175175288-175175501:-|nuORF;chr12:54281945-54282090|429|46.07|0.0|22.14|+|ENST00000550994|HNRNPA1,HNRNPA1;chr12:54281908-54283827|429|44.62|0.0|22.09|+|ENST00000678448|HNRNPA1,HNRNPA1;chr12:54281941-54282052|429|40.72|0.0|21.96|+|ENST00000676842|HNRNPA1,HNRNPA1	ENSG00000135486|ENST00000340913|HNRNPA1	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	OvCa99_classI_Rep5	1	512.2796630859375	2	512.27946	1022.54437	-0.94028	-0.00048169	0.12861	6.5882E-05	-0.81167	-0.0004158	512.2795323470384	27.966	1.2964	27.966	27.591	28.888	0					51	25	4	0	0	0	0.11171	2	886	862;886		94.006	17.232	1	2730200			1764	322	1313	1314	2397;2398	2398					0.0339975824240355
AMPKAMALAM	10	Unmodified	_AMPKAMALAM_					0	0	0			REV__ENST00000482885.1_1_3:159605445-159605709:+|nuORF	REV__ENST00000482885.1_1_3:159605445-159605709:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.8198852539062	2	517.763409	1033.51226	-2.9907	-0.0015485	2.1545	0.0011155	-0.83626	-0.00043298	517.7641500088945	146.22	1.0927	145.26	144.9	145.99	-0.95946					48	21	3	0	0	0	0.026982	1	12348	12348		30.504	11.144	1	103950	+		1765	20267	1314	1315	2399	2399					-0.003151135472990063
AMPTIVPLLGE	11	Unmodified	_AMPTIVPLLGE_					0	0	0			REV__ENSG00000188338|ENST00000614032|SLC38A3	REV__ENSG00000188338|ENST00000614032|SLC38A3	MULTI-MSMS	OvCa9_classI_Rep4_	4	570.8231201171875	2	570.820292	1139.62603	1.0448	0.00059642	1.3999	0.00079909	2.4447	0.0013955	570.8212343162634	84.622	2.0327	81.959	81.594	83.627	-2.6629					120	41	4	0	0	0	0.65947	1	7106	7106		39.253	0	1	1805900	+		1766	22708	1315	1316	2400	2400					0.06180396090985596
AMQPIIFHQG	10	Unmodified	_AMQPIIFHQG_					0	0	0			REV__ENST00000551455.5_1_12:110388962-110434038:-|nuORF	REV__ENST00000551455.5_1_12:110388962-110434038:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	571.2984619140625	2	571.294776	1140.575	0.018868	1.0779E-05	1.3682	0.00078163	1.387	0.00079241	571.2953796690632	66.602	0.92378	66.602	66.25	67.173	0					53	22	3	0	0	0	0.6104	1	6182	6182		40.778	2.9666	1	1513400	+		1767	19611	1316	1317	2401	2401					0.01033491836756184
AMQPIIFHQG	10	Unmodified	_AMQPIIFHQG_					0	0	0			REV__ENST00000551455.5_1_12:110388962-110434038:-|nuORF	REV__ENST00000551455.5_1_12:110388962-110434038:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	571.294776	1140.575	0.018868	1.0779E-05	1.3682	0.00078163	1.387	0.00079241	571.2953796690632	66.602	0.92378	66.602	66.25	67.173	0	0	0	NaN	40.778	53	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1513400	+		1768	19611	1316	1317							0.01033491836756184
AMQVLKQI	8	Unmodified	_AMQVLKQI_					0	0	0			REV__nc|ENSG00000090061|O75909-2|CCNK	REV__nc|ENSG00000090061|O75909-2|CCNK	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.7765808105469	2	465.775688	929.536823	2.0038	0.00093333	2.7889	0.001299	4.7927	0.0022323	465.77638441145956	130.09	6.1548	128.62	125.6	131.75	-1.4779					205	123	4	0	0	0	0.73288	1	12392	12392		35.201	0	1	56999	+		1769	17218	1317	1318	2402	2402					0.06923605922111165
AMRHPTIHV	9	Unmodified	_AMRHPTIHV_					0	0	0		ENST00000530166.5_1_11:68031138-68035636:-|nuORF	ENST00000530166.5_1_11:68031138-68035636:-|nuORF	ENST00000530166.5_1_11:68031138-68035636:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	531.287109375	2	531.287285	1060.56002	-6.3207	-0.0033581	2.0241	0.0010754	-4.2967	-0.0022828	531.2883076308249	158.54	0.44958	157.28	157.11	157.56	-1.267					15	9	2	0	0	0	0.68424	1	13693	13693		21.96	1.013	1	23140			1770	13283	1318	1319	2403	2403					0.032160447594151265
AMRRIVDPE	9	Unmodified	_AMRRIVDPE_					0	0	0		tr|A0A7D7AFK7|A0A7D7AFK7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06030PE=4SV=1	tr|A0A7D7AFK7|A0A7D7AFK7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06030PE=4SV=1	tr|A0A7D7AFK7|A0A7D7AFK7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06030PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.82421875	2	543.789858	1085.56516	1.1207	0.00060942	-3.772	-0.0020512	-2.6513	-0.0014418	543.7878141290317	150.21	0.59895	150.21	149.94	150.54	0					27	11	3	0	0	0	0.027462	1	17611	17611		24.203	0	1	166900			1771	36256	1319	1320	2404	2404					0.0258030383138248
AMSIILERY	9	Unmodified	_AMSIILERY_					0	0	0			REV__tr|A0A553SJQ9|A0A553SJQ9_NIACIAlpha/betahydrolaseOS=NialliacirculansOX=1397GN=CEQ21_17390PE=4SV=1	REV__tr|A0A553SJQ9|A0A553SJQ9_NIACIAlpha/betahydrolaseOS=NialliacirculansOX=1397GN=CEQ21_17390PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	548.2959594726562	2	548.296985	1094.57942	-1.4493	-0.00079464	-1.4824	-0.00081281	-2.9317	-0.0016074	548.2961982412694	34.285	4.3001	31.575	31.119	35.419	-2.7097					197	86	6	0	0	0	0.61208	1	1267	1267		30.504	2.6214	1	2359300	+		1772	30032	1320	1321	2405	2405					0.03590956259699851
AMVLNVQVL	9	Unmodified	_AMVLNVQVL_					0	0	0		tr|A0A553SM48|A0A553SM48_NIACIPTSglucosetransportersubunitIIBCOS=NialliacirculansOX=1397GN=CEQ21_21875PE=4SV=1	tr|A0A553SM48|A0A553SM48_NIACIPTSglucosetransportersubunitIIBCOS=NialliacirculansOX=1397GN=CEQ21_21875PE=4SV=1	tr|A0A553SM48|A0A553SM48_NIACIPTSglucosetransportersubunitIIBCOS=NialliacirculansOX=1397GN=CEQ21_21875PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.7864074707031	2	493.788795	985.563038	0.40814	0.00020153	-4.2023	-0.0020751	-3.7942	-0.0018735	493.786533625888	123	1.5868	121.63	121.36	122.94	-1.3666					76	31	4	0	0	0	0.27546	1	11680	11680		65.803	5.6849	1	252900			1773	33801	1321	1322	2406	2406					0.06967875093585008
AMVQNFTGELL	11	Unmodified	_AMVQNFTGELL_					0	0	0			REV__nc|ENSG00000002746|Q76N89-2|HECW1	REV__nc|ENSG00000002746|Q76N89-2|HECW1	MULTI-MSMS	OvCa99_classI_Rep5	1	611.8137817382812	2	611.810456	1221.60636	2.6046	0.0015935	2.4302	0.0014869	5.0348	0.0030804	611.8117385417406	89.058	1.3414	89.058	88.76	90.101	0					73	32	4	0	0	0	0.52474	1	9490	9490		51.528	3.8704	1	13375000	+		1774	16366	1322	1323	2407	2407					0.004420200802087493
AMWEHPITA	9	Unmodified	_AMWEHPITA_					0	0	0		nc|ENSG00000138621|Q96CD2-2|PPCDC;ENSG00000138621|ENST00000342932|PPCDC	nc|ENSG00000138621|Q96CD2-2|PPCDC	nc|ENSG00000138621|Q96CD2-2|PPCDC	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.8198852539062	2	528.252577	1054.4906	1.9659	0.0010385	1.13	0.00059694	3.0959	0.0016354	528.2525663595234	83.946	0.50591	83.946	83.714	84.22	0					21	11	3	0	0	0	0.027462	1	8749	8749		45.952	20.502	1	1816500			1775	4697	1323	1324	2408	2408					-0.03446458979988165
AMWEHPITA	9	Unmodified	_AMWEHPITA_					0	0	0		nc|ENSG00000138621|Q96CD2-2|PPCDC;ENSG00000138621|ENST00000342932|PPCDC	nc|ENSG00000138621|Q96CD2-2|PPCDC	nc|ENSG00000138621|Q96CD2-2|PPCDC	MULTI-MATCH	OvCa9_classI_Rep3	3		2	528.252577	1054.4906	-1.4535	-0.00076784	2.0507	0.0010833	0.59711	0.00031542	528.2537406164066	86.3	0.40163	84.08	83.885	84.287	-2.2204	0.066946	0.00063196	NaN	45.952	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15926			1776	4697	1323	1324							-0.03446458979988165
AMYICPPLT	9	Unmodified	_AMYICPPLT_					0	0	0			REV__ENSG00000150394|ENST00000577390|CDH8	REV__ENSG00000150394|ENST00000577390|CDH8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.7554016113281	2	504.748282	1007.48201	-0.23137	-0.00011678	3.0611	0.0015451	2.8297	0.0014283	504.74985104657026	115.78	1.0965	114.38	114.17	115.26	-1.3977					31	21	2	0	0	0	0.027462	1	10841	10841		20.482	4.84	1	56902	+		1777	20188	1324	1325	2409	2409					-0.02143148940831452
AMYICPPLT	9	Unmodified	_AMYICPPLT_					0	0	0			REV__ENSG00000150394|ENST00000577390|CDH8	REV__ENSG00000150394|ENST00000577390|CDH8	MULTI-MATCH	OvCa9_classI_Rep2	2		2	504.748282	1007.48201	-0.63685	-0.00032145	3.3601	0.001696	2.7233	0.0013746	504.75003354720536	114.8	1.3325	114.68	114.26	115.59	-0.11777	0.18769	0.00011458	NaN	20.482	37	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32346	+		1778	20188	1324	1325							-0.02143148940831452
AMYICPPLT	9	Unmodified	_AMYICPPLT_					0	0	0			REV__ENSG00000150394|ENST00000577390|CDH8	REV__ENSG00000150394|ENST00000577390|CDH8	MULTI-MATCH	OvCa9_classI_Rep3	3		2	504.748282	1007.48201	-0.81664	-0.0004122	3.2592	0.0016451	2.4426	0.0012329	504.74965144840144	115.45	0.78976	114.41	114.06	114.85	-1.0414	-0.078112	1.2699E-05	NaN	20.482	25	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40785	+		1779	20188	1324	1325							-0.02143148940831452
AMYVRAQPSL	10	Unmodified	_AMYVRAQPSL_					0	0	0		ENSG00000044446|ENST00000379942|PHKA2	ENSG00000044446|ENST00000379942|PHKA2	ENSG00000044446|ENST00000379942|PHKA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.34033203125	2	568.300059	1134.58556	3.9116	0.002223	-4.3142	-0.0024518	-0.40257	-0.00022878	568.2975128481108	88.313	0.83612	88.313	87.881	88.717	0					38	19	3	0	0	0	0.026915	1	9419	9419		20.947	0.95016	1	2151100			1780	1132	1325	1326	2410	2410					0.023654744911937087
ANAIANKI	8	Unmodified	_ANAIANKI_					0	0	0			REV__ENST00000558036.5_1_15:101821931-101826098:-|nuORF	REV__ENST00000558036.5_1_15:101821931-101826098:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.21783447265625	2	407.742702	813.470852	0.75453	0.00030766	-0.26344	-0.00010742	0.49109	0.00020024	407.7425189865877	55.653	0.61141	55.653	55.44	56.052	0					25	14	3	0	0	0	0.028476	1	4622	4622		31.955	13.63	1	409900	+		1781	19040	1326	1327	2411	2411					0.05665533071578466
ANAVARRWL	9	Unmodified	_ANAVARRWL_					0	0	0			REV__nc|ENSG00000105499|Q9UP65-2|PLA2G4C	REV__nc|ENSG00000105499|Q9UP65-2|PLA2G4C	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.2780151367188	2	528.8067	1055.59885	-0.52845	-0.00027945	-0.074111	-3.919E-05	-0.60256	-0.00031864	529.3096147027644	38.859	0.62322	38.859	38.394	39.017	0					17	13	2	0	0	0	0.027462	1	2231	2231		38.806	13.232	1	48852	+		1782	17731	1327	1328	2412	2412					0.0732709338544737
ANDSHPSEEPV	11	Unmodified	_ANDSHPSEEPV_					0	0	0		DDX59|p.K82N|1|0.13|ENSG00000118197|chr1:200666495-200666495|C/G|missense_variant	DDX59|p.K82N|1|0.13|ENSG00000118197|chr1:200666495-200666495|C/G|missense_variant	DDX59|p.K82N|1|0.13|ENSG00000118197|chr1:200666495-200666495|C/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	590.8042602539062	2	591.257099	1180.49965	2.7336	0.0016162	0.4997	0.00029545	3.2333	0.0019117	591.2572505642804	89.347	0.35733	89.347	89.119	89.476	0					14	8	3	0	0	0	0.026007	1	9554	9554		12.812	0	1	279280			1783	724	1328	1329	2413	2413					-0.08338438880605281
ANEDLVEIH	9	Unmodified	_ANEDLVEIH_					0	0	0			REV__CDH5|p.D474A|1|0.09|ENSG00000179776|chr16:66398042-66398042|A/C|missense_variant	REV__CDH5|p.D474A|1|0.09|ENSG00000179776|chr16:66398042-66398042|A/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.8154296875	2	520.256371	1038.49819	-0.89474	-0.00046549	0.94474	0.0004915	0.049998	2.6012E-05	520.2568056061384	66.404	0.68292	66.404	66.174	66.857	0					37	16	4	0	0	0	0.027462	1	6128	6128		44.117	12.587	1	1281100	+		1784	15769	1329	1330	2414	2414					-0.019520281786981286
ANFKAMDSDW	10	Unmodified	_ANFKAMDSDW_					0	0	0		nc|ENSG00000138029|P55084-2|HADHB;ENSG00000138029|ENST00000317799|HADHB	nc|ENSG00000138029|P55084-2|HADHB	nc|ENSG00000138029|P55084-2|HADHB	MULTI-MSMS	OvCa99_classI_Rep5	1	592.7571411132812	2	592.755681	1183.49681	3.7288	0.0022103	0.50327	0.00029831	4.2321	0.0025086	592.754850463239	88.255	0.7539	88.255	87.754	88.508	0					42	17	4	0	0	0	0.0030581	1	9377	9377		168.26	102.79	1	1916400			1785	4647	1330	1331	2415	2415					-0.08759985539131776
ANFLKEKN	8	Unmodified	_ANFLKEKN_					0	0	0		tr|A0A7D6ZXL1|A0A7D6ZXL1_9CLOTCarbamoylphosphatesynthaselargechainOS=ClostridiumintestinaleOX=36845GN=carBPE=3SV=1	tr|A0A7D6ZXL1|A0A7D6ZXL1_9CLOTCarbamoylphosphatesynthaselargechainOS=ClostridiumintestinaleOX=36845GN=carBPE=3SV=1	tr|A0A7D6ZXL1|A0A7D6ZXL1_9CLOTCarbamoylphosphatesynthaselargechainOS=ClostridiumintestinaleOX=36845GN=carBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	481.2774963378906	2	482.266542	962.51853	-0.98488	-0.00047497	-0.50432	-0.00024322	-1.4892	-0.00071819	482.26605306215475	83.098	0.45189	80.802	80.48	80.932	-2.2963					17	8	3	0	0	0	0.028476	1	4688	4688		26.693	0	1	56021			1786	35884	1331	1332	2416	2416					0.03577187271741877
ANGAKLSRVL	10	Unmodified	_ANGAKLSRVL_					0	0	0			REV__WARS|p.A60Vfs*8|1|0.04|ENSG00000140105|chr14:100361842-100361843|-/ACTGGGTTCTGATGGGAAA|frameshift_variant	REV__WARS|p.A60Vfs*8|1|0.04|ENSG00000140105|chr14:100361842-100361843|-/ACTGGGTTCTGATGGGAAA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	514.8154907226562	2	514.81419	1027.61383	-0.46883	-0.00024136	0.70696	0.00036395	0.23813	0.00012259	514.814476393954	69.498	1.1012	69.498	69.184	70.286	0					52	26	3	0	0	0	0.44431	1	6628	6628		62.107	3.3255	1	8640100	+		1787	19655	1332	1333	2417	2417					0.10112540462819197
ANGEAESGELS	11	Unmodified	_ANGEAESGELS_					0	0	0		ENST00000562475.5_1_16:28929220-28935949:-|nuORF;ENST00000564579.1_1_16:28931058-28935949:-|nuORF;ENST00000570030.1_1_16:28931058-28936514:-|nuORF;ENST00000561803.5_1_16:28927516-28936514:-|nuORF;ENST00000562590.5_1_16:28922190-28936514:-|nuORF;nc|ENSG00000177548|Q9H5N1-2|RABEP2;ENSG00000177548|ENST00000358201|RABEP2	ENST00000562475.5_1_16:28929220-28935949:-|nuORF	ENST00000562475.5_1_16:28929220-28935949:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.291748046875	2	532.23055	1062.44655	-1.2553	-0.0006681	2.7007	0.0014374	1.4454	0.0007693	532.2316790529477	56.124	0.60417	52.83	52.617	53.221	-3.2944					15	11	2	0	0	0	0.025861	1	3550	3550		12.207	0	1	23908			1788	7691	1333	1334	2418	2418					-0.0821781666327297
ANGFPLVLLV	10	Unmodified	_ANGFPLVLLV_					0	0	0		ENST00000472135.2_1_X:83695455-83724556:-|nuORF	ENST00000472135.2_1_X:83695455-83724556:-|nuORF	ENST00000472135.2_1_X:83695455-83724556:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	521.8179931640625	2	521.81841	1041.62227	-0.45682	-0.00023838	-0.41175	-0.00021486	-0.86857	-0.00045324	521.8180401068441	115.68	1.6294	114.63	114.11	115.74	-1.0414					71	32	3	0	0	0	0.64063	1	8587	8587		37.159	8.9048	1	346620			1789	12391	1334	1335	2419	2419					0.1031209437940106
ANGKGVFI	8	Unmodified	_ANGKGVFI_					0	0	0		ENST00000541337.5_1_5:139227204-139227366:-|nuORF	ENST00000541337.5_1_5:139227204-139227366:-|nuORF	ENST00000541337.5_1_5:139227204-139227366:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	403.231689453125	2	403.231971	804.449388	2.1395	0.00086272	-2.2493	-0.00090701	-0.10982	-4.4282E-05	403.2309156616357	86.891	2.0023	85.46	85.069	87.071	-1.4311					88	39	4	0	0	0	0.64377	4	7560	7560;7564;7585;7590		54.765	7.7681	1	373290			1790	13466	1335	1336	2420;2421;2422;2423	2420					0.03934148042844754
ANGKGVFI	8	Unmodified	_ANGKGVFI_					0	0	0		ENST00000541337.5_1_5:139227204-139227366:-|nuORF	ENST00000541337.5_1_5:139227204-139227366:-|nuORF	ENST00000541337.5_1_5:139227204-139227366:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	403.2326965332031	2	403.231971	804.449388	0.18538	7.4752E-05	-0.21314	-8.5943E-05	-0.027753	-1.1191E-05	403.2317861890834	87.239	2.5583	85.063	84.784	87.342	-2.1768					122	50	4	0	0	0	0.65582	1	5246	5246		52.299	7.7681	1	785470			1791	13466	1335	1336	2424	2424					0.03934148042844754
ANGKLIKS	8	Unmodified	_ANGKLIKS_					0	0	0			REV__tr|A0A7D6ZYE1|A0A7D6ZYE1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02290PE=3SV=1	REV__tr|A0A7D6ZYE1|A0A7D6ZYE1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02290PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.9077453613281	2	415.758352	829.502152	-0.77022	-0.00032022	0.17069	7.0965E-05	-0.59953	-0.00024926	415.75852015148854	71.29	0.64166	67.834	67.628	68.27	-3.4563					26	12	3	0	0	0	0.028476	1	5452	5452		16.473	9.2798	1	58526	+		1792	32367	1336	1337	2425	2425					0.08058106105659135
ANGLINEIKP	10	Unmodified	_ANGLINEIKP_					0	0	0		ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	MULTI-MSMS	OvCa99_classI_Rep5	1	534.8076782226562	2	534.806031	1067.59751	1.5771	0.00084345	0.17963	9.607E-05	1.7568	0.00093952	534.8062165502813	115.28	0.70135	115.28	114.98	115.68	0					20	14	2	0	0	0	0.53807	1	13175	13175		49.536	3.0793	1	76321			1793	2141	1337	1338	2426	2426					0.06641414506020737
ANGLKAAQIL	10	Unmodified	_ANGLKAAQIL_					0	0	0			REV__nc|ENSG00000159921|Q9Y223-5|GNE	REV__nc|ENSG00000159921|Q9Y223-5|GNE	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.2965393066406	2	499.803291	997.59203	-2.9964	-0.0014976	2.0985	0.0010489	-0.89786	-0.00044875	499.8041617123987	88.223	0.80389	85.62	85.129	85.933	-2.6027					30	15	3	0	0	0	0.026493	1	7549	7549		45.972	0	1	113190	+		1794	20633	1338	1339	2427	2427					0.09313735714226823
ANGLRAESLD	10	Unmodified	_ANGLRAESLD_					0	0	0		nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6	nc|ENSG00000180263|Q6ZV73-2|FGD6	nc|ENSG00000180263|Q6ZV73-2|FGD6	MULTI-MSMS	OvCa99_classI_Rep5	1	523.2674560546875	2	523.26727	1044.51999	-0.49167	-0.00025727	1.9517	0.0010213	1.4601	0.000764	523.2681668323187	30.603	0.49678	30.603	30.433	30.93	0					23	9	3	0	0	0	0.6104	1	1202	1202		40.778	1.972	1	348050			1795	7866	1339	1340	2428	2428					-0.0004922343014186481
ANHRTGVSFT	10	Unmodified	_ANHRTGVSFT_					0	0	0		ENSG00000182348|ENST00000333190|ZNF804B	ENSG00000182348|ENST00000333190|ZNF804B	ENSG00000182348|ENST00000333190|ZNF804B	MULTI-MSMS	OvCa99_classI_Rep5	1	545.2767333984375	2	545.275429	1088.53631	1.5589	0.00085004	-0.2574	-0.00014036	1.3015	0.00070968	545.2753300190966	127.5	1.7876	127.5	127.05	128.84	0					75	38	2	0	0	0	0.24425	3	14758	14758;14783;14806		87.696	19.603	1	11278000			1796	7996	1340	1341	2429;2430;2431	2429					-0.004420974733875482
ANKHGERPVD	10	Unmodified	_ANKHGERPVD_					0	0	0		ENSG00000101745|ENST00000262126|ANKRD12;nc|ENSG00000101745|Q6UB98-2|ANKRD12;ENST00000540578.6_1_18:9182415-9235682:+|nuORF	ENSG00000101745|ENST00000262126|ANKRD12	ENSG00000101745|ENST00000262126|ANKRD12	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.8052368164062	2	561.786161	1121.55777	1.7891	0.0010051	1.9124	0.0010743	3.7015	0.0020794	561.7894665428513	144.87	0.33965	144.87	144.6	144.94	0					9	6	2	0	0	0	0.02676	1	16931	16931		41.427	3.6151	1	18281			1797	2197	1341	1342	2432	2432					0.0018528755533679941
ANKHRTVRI	9	Unmodified	_ANKHRTVRI_					0	0	0			REV__ENSG00000099812|ENST00000215582|MISP	REV__ENSG00000099812|ENST00000215582|MISP	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.8263549804688	2	547.830706	1093.64686	-4.8131	-0.0026367	-3.0811	-0.0016879	-7.8942	-0.0043247	547.8288597088392	154.99	1.902	153.5	152.83	154.73	-1.4911					109	49	3	0	0	0	0.60342	1	15318	15318		31.53	2.3803	1	64964	+		1798	17334	1342	1343	2433	2433					0.10378167305520947
ANKKQNFKS	9	Unmodified	_ANKKQNFKS_					0	0	0		ENSG00000008118|ENST00000361322|CAMK1G	ENSG00000008118|ENST00000361322|CAMK1G	ENSG00000008118|ENST00000361322|CAMK1G	MULTI-SECPEP	OvCa9_classI_Rep2	2	533.2776489257812	2	532.795998	1063.57744	0.10027	5.3421E-05	-1.184	-0.00063084	-1.0837	-0.00057742	532.795449846977	128.18	0.64039	127.96	127.64	128.28	-0.22697					14	12	2	0	0	0	0.027462	1	12588	12588		14.865	3.9993	1	15572			1799	912	1343	1344	2434	2434					0.048196635660815446
ANKKQNFKS	9	Unmodified	_ANKKQNFKS_					0	0	0		ENSG00000008118|ENST00000361322|CAMK1G	ENSG00000008118|ENST00000361322|CAMK1G	ENSG00000008118|ENST00000361322|CAMK1G	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	532.795998	1063.57744	0.24311	0.00012953	-0.70557	-0.00037593	-0.46246	-0.0002464	532.795116104557	129.31	0.64137	127.85	127.5	128.14	-1.4565	-0.052493	0.00036234	NaN	14.865	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9965.4			1800	912	1343	1344							0.048196635660815446
ANKLLQPRI	9	Unmodified	_ANKLLQPRI_					0	0	0			REV__nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	REV__nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	MULTI-MSMS	OvCa9_classI_Rep3	3	526.8321533203125	2	526.832383	1051.65021	-0.02688	-1.4162E-05	2.9838	0.001572	2.9569	0.0015578	526.8321214850487	69.898	2.0087	67.178	66.856	68.864	-2.7196					118	39	6	0	0	0	0.53957	1	3195	3195		38.806	3.1879	1	1842000	+		1801	18817	1344	1345	2435	2435					0.12645417359499334
ANLARCTIL	9	Unmodified	_ANLARCTIL_					0	0	0			REV__ENSG00000134757|ENST00000257189|DSG3	REV__ENSG00000134757|ENST00000257189|DSG3	MULTI-MSMS	OvCa99_classI_Rep5	1	487.7752685546875	2	487.776219	973.537886	0.47998	0.00023412	-2.9247	-0.0014266	-2.4447	-0.0011925	487.77467246217884	141.15	1.1038	141.15	140.73	141.83	0					60	21	4	0	0	0	0.53483	1	16521	16521		39.253	0.44669	1	897800	+		1802	19227	1345	1346	2436	2436					0.05005820291012242
ANLFMDLPCL	10	Unmodified	_ANLFMDLPCL_					0	0	0			REV__ENST00000460583.1_1_1:147119227-147122061:-|nuORF	REV__ENST00000460583.1_1_1:147119227-147122061:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.826171875	2	568.77757	1135.54059	0.12159	6.916E-05	-4.453	-0.0025328	-4.3314	-0.0024636	569.2769329841681	70.944	0.34757	70.944	70.761	71.109	0					12	8	2	0	0	0	0.027056	1	6832	6832		27.882	5.3026	1	312050	+		1803	20783	1346	1347	2437	2437					-0.02176092366357807
ANLKKPILL	9	Unmodified	_ANLKKPILL_					0	0	0		ENSG00000163781|ENST00000260810|TOPBP1;TOPBP1|p.R388Vfs*5|1|0.21|ENSG00000163781|chr3:133649871-133649871|G/-|frameshift_variant	ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.3414306640625	2	505.342052	1008.66955	2.4457	0.0012359	-3.7738	-0.0019071	-1.3281	-0.00067113	505.33994217432223	135.22	1.8729	133.68	133.11	134.99	-1.5437					124	33	5	0	0	0	0.61208	1	13182	13182		30.504	2.6214	1	1621800			1804	6358	1347	1348	2438	2438					0.16556373650416845
ANLNLKHGF	9	Unmodified	_ANLNLKHGF_					0	0	0		ENSG00000159708|ENST00000329956|LRRC36;nc|ENSG00000159708|Q1X8D7-3|LRRC36;nc|ENSG00000159708|Q1X8D7-2|LRRC36	ENSG00000159708|ENST00000329956|LRRC36	ENSG00000159708|ENST00000329956|LRRC36	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.3512878417969	2	507.279983	1012.54541	2.5151	0.0012758	1.9558	0.00099212	4.4708	0.002268	507.2812499086475	98.898	0.94127	98.898	98.376	99.318	0					29	22	2	0	0	0	0.027426	1	10918	10918		44.117	0	1	1386400			1805	6024	1348	1349	2439	2439					0.03964295882951774
ANLTLRAPL	9	Unmodified	_ANLTLRAPL_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.7988586425781	2	484.798009	967.581465	0.30051	0.00014569	-0.83504	-0.00040482	-0.53453	-0.00025914	484.7974903201912	59.862	0.98339	56.432	56.111	57.095	-3.43					48	19	3	0	0	0	0.21231	1	4019	4019		74.255	12.148	1	535580	+		1806	22747	1349	1350	2440	2440					0.09637753059791976
ANLVSPHEF	9	Unmodified	_ANLVSPHEF_					0	0	0			REV__tr|A0A7D6ZRZ9|A0A7D6ZRZ9_9CLOTCysteinedesulfuraseOS=ClostridiumintestinaleOX=36845GN=HZF06_05810PE=3SV=1	REV__tr|A0A7D6ZRZ9|A0A7D6ZRZ9_9CLOTCysteinedesulfuraseOS=ClostridiumintestinaleOX=36845GN=HZF06_05810PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.8115539550781	2	507.256174	1012.49779	0.059307	3.0084E-05	3.9144	0.0019856	3.9737	0.0020157	507.2583493817272	71.991	0.78208	69.484	69.121	69.903	-2.5072					18	14	2	0	0	0	0.027462	1	5860	5860		20.947	7.9877	1	19391	+		1807	32172	1350	1351	2441	2441					-0.007954031079066226
ANLVVVAIS	9	Unmodified	_ANLVVVAIS_					0	0	0		ENSG00000249581|ENST00000511148|CLRN2	ENSG00000249581|ENST00000511148|CLRN2	ENSG00000249581|ENST00000511148|CLRN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	443.2757568359375	2	443.273835	884.533118	1.1525	0.00051086	-4.3689	-0.0019366	-3.2165	-0.0014258	443.27180064343105	139.52	2.0991	138.02	137.22	139.32	-1.4952					91	40	3	0	0	0	0.6653	1	13695	13695		24.203	1.1603	1	858700			1808	9411	1351	1352	2442	2442					0.08623259419891838
ANLWDKKI	8	Unmodified	_ANLWDKKI_					0	0	0			REV__tr|A0A553SQI6|A0A553SQI6_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_07610PE=4SV=1	REV__tr|A0A553SQI6|A0A553SQI6_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_07610PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	494.2857971191406	2	494.284734	986.554916	-0.18377	-9.0836E-05	-0.43615	-0.00021558	-0.61992	-0.00030642	494.2844598093376	56.812	1.0682	56.812	56.498	57.566	0					70	24	4	0	0	0	0.24597	1	4744	4744		116.9	6.7837	1	11090000	+		1809	30635	1352	1353	2443	2443					0.0611006416845612
ANMDIVYKDM	10	Unmodified	_ANMDIVYKDM_					0	0	0		ENSG00000050393|ENST00000379170|MCUR1	ENSG00000050393|ENST00000379170|MCUR1	ENSG00000050393|ENST00000379170|MCUR1	MULTI-MSMS	OvCa9_classI_Rep4_	4	600.2721557617188	2	600.275392	1198.53623	-5.913	-0.0035494	0.33593	0.00020165	-5.577	-0.0033478	600.2754165352742	160.39	2.7294	158.78	158.34	161.07	-1.6101					180	65	4	0	0	0	0.79917	1	15989	15989		19.104	0	1	309270			1810	1179	1353	1354	2444	2444					-0.0550960157991085
ANMFSFNDI	9	Unmodified	_ANMFSFNDI_					0	0	0		tr|A0A7D6VMP6|A0A7D6VMP6_9CLOTUvrABCsystemproteinAOS=ClostridiumintestinaleOX=36845GN=HZF06_12625PE=3SV=1	tr|A0A7D6VMP6|A0A7D6VMP6_9CLOTUvrABCsystemproteinAOS=ClostridiumintestinaleOX=36845GN=HZF06_12625PE=3SV=1	tr|A0A7D6VMP6|A0A7D6VMP6_9CLOTUvrABCsystemproteinAOS=ClostridiumintestinaleOX=36845GN=HZF06_12625PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.7373657226562	2	529.734217	1057.45388	1.2866	0.00068153	3.8955	0.0020636	5.1821	0.0027451	529.7361471538974	109.29	0.79591	109.29	109.02	109.81	0					38	17	3	0	0	0	0.2422	1	12377	12377		69.628	10.846	1	1190400			1811	34665	1354	1355	2445	2445					-0.07254755596545692
ANMILLLSV	9	Oxidation (M)	_ANM(Oxidation (M))ILLLSV_		ANM(1)ILLLSV		ANM(88)ILLLSV	0	0	1			REV__tr|A0A7D6VQW6|A0A7D6VQW6_9CLOTPTSglucitol/sorbitoltransportersubunitIICOS=ClostridiumintestinaleOX=36845GN=HZF06_22680PE=4SV=1	REV__tr|A0A7D6VQW6|A0A7D6VQW6_9CLOTPTSglucitol/sorbitoltransportersubunitIICOS=ClostridiumintestinaleOX=36845GN=HZF06_22680PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	495.2862548828125	2	495.288628	988.562703	-0.86686	-0.00042935	-3.8355	-0.0018997	-4.7024	-0.002329	495.2870763482212	102.1	1.7794	101.34	100.82	102.6	-0.76094					67	35	4	0	0	0	0.13482	1	9397	9397		87.754	16.459	1	435190	+		1812	31364	1355	1356	2446	2446		694			0.06796455373739718
ANMWFKNLD	9	Unmodified	_ANMWFKNLD_					0	0	0		ENST00000462144.1_1_19:12771887-12774226:-|nuORF;ENST00000466794.5_1_19:12769146-12777470:-|nuORF;nc|ENSG00000104774|O00754-2|MAN2B1;ENSG00000104774|ENST00000456935|MAN2B1	ENST00000462144.1_1_19:12771887-12774226:-|nuORF	ENST00000462144.1_1_19:12771887-12774226:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	568.845947265625	2	569.771134	1137.52771	1.0335	0.00058888	2.4013	0.0013682	3.4349	0.0019571	569.7722930679705	122.17	1.5208	121.14	120.59	122.11	-1.0286					46	28	3	0	0	0	0.027447	1	9449	9449		47.657	23.455	1	50738			1813	2392	1356	1357	2447	2447					-0.03554787434245554
ANNPKLLIL	9	Unmodified	_ANNPKLLIL_					0	0	0		tr|A0A7D7A5K9|A0A7D7A5K9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07290PE=4SV=1	tr|A0A7D7A5K9|A0A7D7A5K9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07290PE=4SV=1	tr|A0A7D7A5K9|A0A7D7A5K9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07290PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.3336181640625	2	498.316035	994.617516	-2.4052	-0.0011985	-0.76342	-0.00038043	-3.1686	-0.001579	498.3166867378834	126.47	0.58784	125.06	124.88	125.46	-1.4143					26	11	3	0	0	0	0.027455	1	12035	12035		26.693	16.428	1	16609			1814	36172	1357	1358	2448	2448					0.11999210236660929
ANPDAKDH	8	Unmodified	_ANPDAKDH_					0	0	0		ENST00000553388.1_1_X:107330914-107334750:-|nuORF;nc|ENSG00000101843|O75832-2|PSMD10;ENSG00000101843|ENST00000217958|PSMD10	ENST00000553388.1_1_X:107330914-107334750:-|nuORF	ENST00000553388.1_1_X:107330914-107334750:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	434.2031555175781	2	434.201399	866.388245	1.2083	0.00052466	3.1726	0.0013775	4.3809	0.0019022	434.2025958640944	128.74	0.88927	127.64	127.37	128.26	-1.0933					42	17	3	0	0	0	0.73626	1	10165	10165		33.516	6.7195	1	151830			1815	2203	1358	1359	2449	2449					-0.05029408727239115
ANPTIKIKDKD	11	Unmodified	_ANPTIKIKDKD_					0	0	0			REV__ENST00000520448.5_1_8:24181385-24209525:+|nuORF	REV__ENST00000520448.5_1_8:24181385-24209525:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	414.90557861328125	3	414.906594	1241.69795	-1.8177	-0.00075419	-0.43755	-0.00018154	-2.2553	-0.00093573	414.9064020831429	36.035	0.88996	33.325	33.102	33.992	-2.7097					37	17	3	0	0	0	0.72469	1	1519	1519		19.627	0.36425	1	88921	+		1816	15563	1359	1360	2450	2450					0.08677026769032636
ANQKGNTVTK	10	Unmodified	_ANQKGNTVTK_					0	0	0			REV__ENSG00000179104|ENST00000321196|TMTC2	REV__ENSG00000179104|ENST00000321196|TMTC2	MULTI-MSMS	OvCa9_classI_Rep2	2	530.7914428710938	2	530.790912	1059.56727	-2.5847	-0.0013719	2.602	0.0013811	0.017268	9.1659E-06	530.7922153115414	62.531	1.6878	59.777	59.093	60.781	-2.7541					56	32	2	0	0	0	0.67931	1	4692	4692		32.812	1.2826	1	272960	+		1817	22101	1360	1361	2451	2451					0.03987055840843823
ANREPREGGKT	11	Unmodified	_ANREPREGGKT_					0	0	0		ENST00000557957.5_1_15:85523767-85607601:+|nuORF	ENST00000557957.5_1_15:85523767-85607601:+|nuORF	ENST00000557957.5_1_15:85523767-85607601:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	404.9114990234375	3	405.546059	1213.61635	1.6386	0.00066453	2.143	0.0008691	3.7816	0.0015336	405.54686667801406	59.399	0.54221	56.007	55.805	56.347	-3.392					18	10	2	0	0	0	0.025638	1	3976	3976		7.6794	0	1	21627			1818	13691	1361	1362	2452	2452					0.01808344129813122
ANRQGGAVI	9	Unmodified	_ANRQGGAVI_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	442.2584228515625	2	443.248683	884.482814	1.0364	0.0004594	-1.7409	-0.00077165	-0.70447	-0.00031225	443.24791411958245	45.053	0.83472	45.053	44.706	45.54	0					31	18	2	0	0	0	0.027456	1	3089	3089		23.042	0	1	221280	+		1819	28906	1362	1363	2453	2453					0.035951498147596794
ANRSVATRAL	10	Unmodified	_ANRSVATRAL_					0	0	0		Harlequin-int_dup161|chr4:91353598-91357139:-|1.3911466287095282|0.2716421829311496|2.36|422.0|145|1|anti-sense	Harlequin-int_dup161|chr4:91353598-91357139:-|1.3911466287095282|0.2716421829311496|2.36|422.0|145|1|anti-sense	Harlequin-int_dup161|chr4:91353598-91357139:-|1.3911466287095282|0.2716421829311496|2.36|422.0|145|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	529.8032836914062	2	529.806897	1057.59924	0.35582	0.00018852	-2.2625	-0.0011987	-1.9067	-0.0010102	529.8030255036192	105.38	2.0148	104.03	103.57	105.59	-1.3482					144	38	5	0	0	0	0.24109	1	7384	7384		88.177	7.7223	1	4513200			1820	14364	1363	1364	2454	2454					0.07274468314653859
ANRVVDLLL	9	Unmodified	_ANRVVDLLL_					0	0	0			REV__nc|ENSG00000131779|O96011-2|PEX11B	REV__nc|ENSG00000131779|O96011-2|PEX11B	MULTI-MSMS	OvCa9_classI_Rep2	2	506.8096008300781	2	506.811116	1011.60768	-1.1259	-0.00057063	0.32757	0.00016601	-0.79835	-0.00040461	506.81130069607957	99.678	3.3722	98.848	98.219	101.59	-0.83051					157	66	4	0	0	0	0.46356	1	9141	9141		45.972	1.5951	1	2351400	+		1821	19034	1364	1365	2455	2455					0.10234022231293238
ANRVVDLLL	9	Unmodified	_ANRVVDLLL_					0	0	0			REV__nc|ENSG00000131779|O96011-2|PEX11B	REV__nc|ENSG00000131779|O96011-2|PEX11B	MULTI-MSMS	OvCa9_classI_Rep3	3	506.8110046386719	2	506.811116	1011.60768	-1.285	-0.00065125	-0.29635	-0.00015019	-1.5813	-0.00080144	506.8109472666925	100.58	3.0909	98.975	98.659	101.75	-1.6053					152	59	4	0	0	0	0.3076	1	6896	6896		62.107	1.9892	1	2966100	+		1822	19034	1364	1365	2456	2456					0.10234022231293238
ANSGAIVKL	9	Unmodified	_ANSGAIVKL_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;SPTAN1|p.Q1734Rfs*19|1|0.63|ENSG00000197694|chr9:128615697-128615725|CCAAGTAAAGGACAAGAGGGACACCATCA/-|frameshift_variant;SPTAN1|p.M1752Ifs*16|1|0.07|ENSG00000197694|chr9:128615752-128615753|-/TTCCTGAGTTCTTATG|frameshift_variant;SPTAN1|p.C956Afs*33|1|0.61|ENSG00000197694|chr9:128587691-128587691|C/-|frameshift_variant	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	OvCa9_classI_Rep2	2	436.7640380859375	2	436.763635	871.512717	0.92933	0.0004059	-1.1426	-0.00049904	-0.21325	-9.314E-05	436.7630862297445	71.966	1.7744	69.459	68.963	70.737	-2.5071					79	33	3	0	0	0	0.0072874	1	5815	5815		190.26	32.932	1	470650			1823	8736	1365	1366	2457	2457					0.071820887600893
ANSGAIVKL	9	Unmodified	_ANSGAIVKL_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;SPTAN1|p.Q1734Rfs*19|1|0.63|ENSG00000197694|chr9:128615697-128615725|CCAAGTAAAGGACAAGAGGGACACCATCA/-|frameshift_variant;SPTAN1|p.M1752Ifs*16|1|0.07|ENSG00000197694|chr9:128615752-128615753|-/TTCCTGAGTTCTTATG|frameshift_variant;SPTAN1|p.C956Afs*33|1|0.61|ENSG00000197694|chr9:128587691-128587691|C/-|frameshift_variant	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.7646484375	2	436.763635	871.512717	-0.90276	-0.00039429	0.52417	0.00022894	-0.37859	-0.00016536	436.7637500288892	72.966	1.9763	69.57	68.765	70.741	-3.3961					93	40	4	0	0	0	0.0083158	3	5630	5620;5630;5641		204.62	33.338	1	1194500			1824	8736	1365	1366	2458;2459;2460	2459					0.071820887600893
ANVLPFHL	8	Unmodified	_ANVLPFHL_					0	0	0			REV__ENSG00000159337|ENST00000290472|PLA2G4D	REV__ENSG00000159337|ENST00000290472|PLA2G4D	MULTI-MSMS	OvCa99_classI_Rep5	1	455.7584228515625	2	455.760895	909.507237	-0.24256	-0.00011055	-4.2518	-0.0019378	-4.4943	-0.0020483	455.75875538089144	42.643	0.59809	42.643	42.372	42.97	0					27	13	3	0	0	0	0.40641	1	2759	2759		86.935	8.9908	1	477270	+		1825	20609	1366	1367	2461	2461					0.04886409968275984
ANYHRPLGTP	10	Unmodified	_ANYHRPLGTP_					0	0	0			REV__ENST00000598802.1_1_19:50545003-50545258:+|nuORF	REV__ENST00000598802.1_1_19:50545003-50545258:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	563.2976684570312	2	563.293622	1124.57269	1.464	0.00082464	0.001506	8.483E-07	1.4655	0.00082548	563.293537841004	142.36	2.6625	142.36	141.93	144.6	0					88	53	2	0	0	0	0.6349	1	16711	16711		37.812	2.1932	1	1021600	+		1826	28016	1367	1368	2462	2462					0.015387794233447494
APAAAVIALS	10	Unmodified	_APAAAVIALS_					0	0	0		tr|A0A7D6ZFT1|A0A7D6ZFT1_9CLOTIg-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19200PE=4SV=1	tr|A0A7D6ZFT1|A0A7D6ZFT1_9CLOTIg-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19200PE=4SV=1	tr|A0A7D6ZFT1|A0A7D6ZFT1_9CLOTIg-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19200PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	443.2565612792969	2	442.26601	882.517468	1.0399	0.00045989	-4.0905	-0.0018091	-3.0507	-0.0013492	442.2656202756365	67.808	1.5225	64.318	63.198	64.72	-3.4902					41	30	3	0	0	0	0.027084	1	4863	4863		31.955	0	1	30555			1827	35523	1368	1369	2463	2463					0.07150972902832109
APAAAVIALS	10	Unmodified	_APAAAVIALS_					0	0	0		tr|A0A7D6ZFT1|A0A7D6ZFT1_9CLOTIg-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19200PE=4SV=1	tr|A0A7D6ZFT1|A0A7D6ZFT1_9CLOTIg-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19200PE=4SV=1	tr|A0A7D6ZFT1|A0A7D6ZFT1_9CLOTIg-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19200PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	442.26601	882.517468	-0.33262	-0.00014711	-2.3968	-0.00106	-2.7294	-0.0012071	442.2659735434376	63.992	0.43945	63.992	63.814	64.253	0	-0.20062	0.0010166	NaN	17.365	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93258			1828	35523	1368	1369							0.07150972902832109
APAAAVIALS	10	Unmodified	_APAAAVIALS_					0	0	0		tr|A0A7D6ZFT1|A0A7D6ZFT1_9CLOTIg-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19200PE=4SV=1	tr|A0A7D6ZFT1|A0A7D6ZFT1_9CLOTIg-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19200PE=4SV=1	tr|A0A7D6ZFT1|A0A7D6ZFT1_9CLOTIg-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19200PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	442.26601	882.517468	1.3557	0.00059958	-4.2035	-0.0018591	-2.8479	-0.0012595	442.2654306519195	66.929	0.69379	64.268	64	64.693	-2.661	0.075548	-0.00058158	NaN	17.365	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8598.3			1829	35523	1368	1369							0.07150972902832109
APAALRGRLL	10	Unmodified	_APAALRGRLL_					0	0	0		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	OvCa9_classI_Rep2	2	519.33251953125	2	519.33255	1036.65055	0.74298	0.00038586	-1.3769	-0.00071507	-0.63391	-0.00032921	519.3318212319899	70.971	1.0488	68.4	68.114	69.163	-2.5707					53	19	4	0	0	0	0.55145	1	5698	5698		47.916	1.9636	1	947020			1830	9247	1369	1370	2464	2464					0.13368837079360674
APAALRGRLL	10	Unmodified	_APAALRGRLL_					0	0	0		ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	ENSG00000223496|ENST00000435634|EXOSC6	MULTI-MSMS	OvCa9_classI_Rep3	3	519.3328247070312	2	519.33255	1036.65055	0.67622	0.00035118	-1.2042	-0.00062537	-0.52796	-0.00027419	519.3318594599918	71.111	1.2027	68.392	68.008	69.211	-2.7196					78	23	4	0	0	0	0.56767	2	3299	3288;3299		45.952	15.448	1	1378400			1831	9247	1369	1370	2465;2466	2466					0.13368837079360674
APAARRSRI	9	Unmodified	_APAARRSRI_					0	0	0		chr15:92444929-92464100|314|10.46|0.43|4.59|+|0|ST8SIA2,ST8SIA2|1	chr15:92444929-92464100|314|10.46|0.43|4.59|+|0|ST8SIA2,ST8SIA2|1	chr15:92444929-92464100|314|10.46|0.43|4.59|+|0|ST8SIA2,ST8SIA2|1	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.2718200683594	2	499.304324	996.594095	-0.71101	-0.00035501	3.3532	0.0016743	2.6422	0.0013193	499.305370089404	89.243	0.79919	87.112	86.846	87.645	-2.1309					21	15	2	0	0	0	0.027441	1	5490	5490		58.782	19.529	1	25897			1832	365	1370	1371	2467	2467					0.0956620924271192
APADIAKVLIS	11	Unmodified	_APADIAKVLIS_					0	0	0		sp|P09731|US07_HCMVAUniqueshortUS7glycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=US7PE=3SV=1;sp|F5HDD3|US07_HCMVMMembraneglycoproteinUS7OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US7PE=3SV=1	sp|P09731|US07_HCMVAUniqueshortUS7glycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=US7PE=3SV=1	sp|P09731|US07_HCMVAUniqueshortUS7glycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=US7PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.2901611328125	2	549.331882	1096.64921	-0.18373	-0.00010093	0.14213	7.8076E-05	-0.041604	-2.2854E-05	549.3317574427776	69.007	0.41074	69.007	68.774	69.184	0					20	9	3	0	0	0	0.025746	1	6552	6552		25.574	0	1	426450			1833	32862	1371	1372	2468	2468					0.10475158199960788
APAEDRSL	8	Unmodified	_APAEDRSL_					0	0	0		ENSG00000168621|ENST00000326524|GDNF;nc|ENSG00000168621|P39905-3|GDNF	ENSG00000168621|ENST00000326524|GDNF	ENSG00000168621|ENST00000326524|GDNF	MULTI-SECPEP	OvCa9_classI_Rep2	2	429.7560729980469	2	429.719424	857.424296	0.013718	5.8949E-06	0.12029	5.1691E-05	0.13401	5.7586E-05	429.71931713613685	30.949	0.54065	28.239	28.1	28.641	-2.7097					14	10	2	0	0	0	0.028476	1	924	924		30.504	1.3541	1	12602			1834	6927	1372	1373	2469	2469					-0.010119515503674847
APAETQVGL	9	Unmodified	_APAETQVGL_					0	0	0			REV__ENST00000478701.1_1_2:210642002-210650886:+|nuORF	REV__ENST00000478701.1_1_2:210642002-210650886:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	442.60107421875	2	443.23745	884.460347	0.65909	0.00029213	-0.30661	-0.0001359	0.35248	0.00015623	443.23724287549	49.505	0.8419	46.745	46.473	47.315	-2.7603					26	16	2	0	0	0	0.027462	1	3167	3167		29.15	12.445	1	34350	+		1835	26421	1373	1374	2470	2470					0.013495056264787308
APAFPRDARLL	11	Unmodified	_APAFPRDARLL_					0	0	0		nc|ENSG00000088881|Q9BQW3-1|EBF4	nc|ENSG00000088881|Q9BQW3-1|EBF4	nc|ENSG00000088881|Q9BQW3-1|EBF4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	409.8814697265625	3	409.571657	1225.69314	0.60418	0.00024746	-4.2558	-0.0017431	-3.6516	-0.0014956	409.5698781334467	52.148	1.5075	48.94	48.641	50.149	-3.208					69	29	4	0	0	0	0.025656	1	3158	3158		14.694	0	1	516940			1836	14912	1374	1375	2471	2471					0.08932187416939996
APAGLVKRG	9	Unmodified	_APAGLVKRG_					0	0	0			REV__ENST00000485210.1_1_3:49038767-49040202:+|nuORF	REV__ENST00000485210.1_1_3:49038767-49040202:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	434.77142333984375	2	434.771794	867.529036	1.2559	0.00054602	-1.3563	-0.00058966	-0.10039	-4.3645E-05	434.7711959531507	41.911	2.4713	39.201	38.881	41.353	-2.7097					118	49	4	0	0	0	0.52083	1	2271	2271		40.573	3.4135	1	2230100	+		1837	26559	1375	1376	2472	2472					0.08997214716850976
APAGPSHVI	9	Unmodified	_APAGPSHVI_					0	0	0			REV__ENSG00000145743|ENST00000542267|FBXL17	REV__ENSG00000145743|ENST00000542267|FBXL17	MULTI-MSMS	OvCa9_classI_Rep4_	4	424.73590087890625	2	424.734877	847.455202	0.27058	0.00011493	-0.36476	-0.00015493	-0.094177	-4E-05	424.7346164279098	59.517	1.0815	56.125	55.854	56.936	-3.392					67	21	4	0	0	0	0.42057	1	3982	3982		50.025	4.0523	1	556470	+		1838	19982	1376	1377	2473	2473					0.025372465545160594
APAGPSHVI	9	Unmodified	_APAGPSHVI_					0	0	0			REV__ENSG00000145743|ENST00000542267|FBXL17	REV__ENSG00000145743|ENST00000542267|FBXL17	MULTI-MATCH	OvCa9_classI_Rep2	2		2	424.734877	847.455202	-0.389	-0.00016522	0.98727	0.00041933	0.59827	0.00025411	424.73512725506754	58.957	1.1338	56.177	55.789	56.923	-2.7801	0.025835	0.00051112	NaN	50.025	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99216	+		1839	19982	1376	1377							0.025372465545160594
APAGPSHVI	9	Unmodified	_APAGPSHVI_					0	0	0			REV__ENSG00000145743|ENST00000542267|FBXL17	REV__ENSG00000145743|ENST00000542267|FBXL17	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	424.734877	847.455202	0.27058	0.00011493	-0.36476	-0.00015493	-0.094177	-4E-05	424.7346164279098	59.517	1.0815	56.125	55.854	56.936	-3.392	-0.025835	-0.00063739	NaN	50.025	67	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	556470	+		1840	19982	1376	1377							0.025372465545160594
APAGRKVGL	9	Unmodified	_APAGRKVGL_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000529920.5_1_8:146015191-146016147:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	OvCa9_classI_Rep2	2	434.771484375	2	434.771794	867.529036	1.2559	0.00054602	-1.3563	-0.00058966	-0.10039	-4.3645E-05	434.7711959531507	41.911	2.4713	39.201	38.881	41.353	-2.7097					118	49	4	0	0	0	0.13154	10	2266	2212;2218;2224;2230;2236;2242;2247;2254;2266;2278		88.643	25.664	1	2230100			1841	6116	1377	1378	2474;2475;2476;2477;2478;2479;2480;2481;2482;2483	2482					0.08997214716850976
APAGRKVGL	9	Unmodified	_APAGRKVGL_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000529920.5_1_8:146015191-146016147:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	OvCa9_classI_Rep4_	4	434.7720031738281	2	434.771794	867.529036	-0.43364	-0.00018854	-0.093561	-4.0678E-05	-0.52721	-0.00022921	434.7718097454051	42.269	2.713	39.288	38.959	41.672	-2.9804					147	52	5	0	0	0	0.16524	9	1975	1930;1939;1951;1963;1975;1987;1999;2012;2025		82.305	21.333	1	8719800			1842	6116	1377	1378	2484;2485;2486;2487;2488;2489;2490;2491;2492	2488					0.08997214716850976
APAGRLEPEP	10	Unmodified	_APAGRLEPEP_					0	0	0			REV__ENST00000260502.10_1_1:94140382-94147383:-|nuORF	REV__ENST00000260502.10_1_1:94140382-94147383:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.8123168945312	2	518.774731	1035.53491	-0.32728	-0.00016978	2.5616	0.0013289	2.2343	0.0011591	518.7748073513822	87.826	0.82282	85.65	85.396	86.219	-2.1768					46	15	5	0	0	0	0.026782	1	5362	5362		45.972	33.766	1	62845	+		1843	23928	1378	1379	2493	2493					0.018562684378366612
APAGRLEPEP	10	Unmodified	_APAGRLEPEP_					0	0	0			REV__ENST00000260502.10_1_1:94140382-94147383:-|nuORF	REV__ENST00000260502.10_1_1:94140382-94147383:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	518.774731	1035.53491	-2.9008	-0.0015049	3.7269	0.0019334	0.82605	0.00042854	518.775823716306	88.207	0.70802	85.605	85.377	86.085	-2.6027	-0.022443	0.00046658	NaN	30.318	33	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50602	+		1844	23928	1378	1379							0.018562684378366612
APAGRNAIP	9	Unmodified	_APAGRNAIP_					0	0	0		ENST00000314124.11_2_3:12800809-12800929:-|nuORF	ENST00000314124.11_2_3:12800809-12800929:-|nuORF	ENST00000314124.11_2_3:12800809-12800929:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	433.7469787597656	2	433.745776	865.477	0.13003	5.6401E-05	-0.27393	-0.00011882	-0.1439	-6.2416E-05	433.7455649383322	48.383	1.0856	45.275	44.938	46.024	-3.1077					49	20	4	0	0	0	0.32337	1	2668	2668		60.294	10.269	1	215080			1845	10318	1379	1380	2494	2494					0.03888051303067641
APAGRNAIP	9	Unmodified	_APAGRNAIP_					0	0	0		ENST00000314124.11_2_3:12800809-12800929:-|nuORF	ENST00000314124.11_2_3:12800809-12800929:-|nuORF	ENST00000314124.11_2_3:12800809-12800929:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	433.745776	865.477	-0.62495	-0.00027107	0.67361	0.00029217	0.048658	2.1105E-05	433.7459432889092	48.143	0.79676	45.434	45.133	45.929	-2.7097	0.079201	0.00060075	NaN	60.294	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28480			1846	10318	1379	1380							0.03888051303067641
APAGTTSSRVL	11	Unmodified	_APAGTTSSRVL_					0	0	0		nc|ENSG00000186660|Q96JP5-2|ZFP91;ENSG00000186660|ENST00000316059|ZFP91	nc|ENSG00000186660|Q96JP5-2|ZFP91	nc|ENSG00000186660|Q96JP5-2|ZFP91	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.2949829101562	2	530.293288	1058.57202	-1.8447	-0.00097824	1.5633	0.00082899	-0.28145	-0.00014925	530.2939801551018	54.989	1.6332	51.742	51.132	52.765	-3.2474					69	29	4	0	0	0	0.29406	2	3452	3440;3452		68.846	11.035	1	584120			1847	8354	1380	1381	2495;2496	2496					0.045079399836367884
APAHALGAF	9	Unmodified	_APAHALGAF_					0	0	0		ENST00000588919.5_1_19:1105440-1106636:+|nuORF	ENST00000588919.5_1_19:1105440-1106636:+|nuORF	ENST00000588919.5_1_19:1105440-1106636:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	427.72967529296875	2	427.729595	853.444637	-0.90128	-0.0003855	1.2506	0.00053491	0.3493	0.0001494	427.7299657003553	43.632	0.68815	43.632	43.435	44.123	0					39	15	3	0	0	0	0.53728	1	2918	2918		39.021	3.8208	1	1917000			1848	14080	1381	1382	2497	2497					0.012052639000899035
APAIHQIVL	9	Unmodified	_APAIHQIVL_					0	0	0		ARID2|p.S1616Rfs*20|1|0.08|ENSG00000189079|chr12:45860874-45860875|-/ACACAAATACTTAACCATTGTGTTACGGT|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2	ARID2|p.S1616Rfs*20|1|0.08|ENSG00000189079|chr12:45860874-45860875|-/ACACAAATACTTAACCATTGTGTTACGGT|frameshift_variant	ARID2|p.S1616Rfs*20|1|0.08|ENSG00000189079|chr12:45860874-45860875|-/ACACAAATACTTAACCATTGTGTTACGGT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	481.2950134277344	2	481.295102	960.575651	0.43241	0.00020812	-0.93648	-0.00045072	-0.50407	-0.00024261	481.2946009168863	92.061	1.4014	90.826	90.484	91.886	-1.2355					70	26	4	0	0	0	0.44294	2	8185	8185;8191		47.916	14.423	1	508530			1849	115	1382	1383	2498;2499	2498					0.09378654548117993
APAIHQIVL	9	Unmodified	_APAIHQIVL_					0	0	0		ARID2|p.S1616Rfs*20|1|0.08|ENSG00000189079|chr12:45860874-45860875|-/ACACAAATACTTAACCATTGTGTTACGGT|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2	ARID2|p.S1616Rfs*20|1|0.08|ENSG00000189079|chr12:45860874-45860875|-/ACACAAATACTTAACCATTGTGTTACGGT|frameshift_variant	ARID2|p.S1616Rfs*20|1|0.08|ENSG00000189079|chr12:45860874-45860875|-/ACACAAATACTTAACCATTGTGTTACGGT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	481.2956237792969	2	481.295102	960.575651	-1.2517	-0.00060245	0.015584	7.5006E-06	-1.2362	-0.00059495	481.2950148812796	92.776	1.375	90.814	90.56	91.935	-1.9617					73	27	4	0	0	0	0.44294	2	5900	5900;5911		47.916	12.297	1	702020			1850	115	1382	1383	2500;2501	2500					0.09378654548117993
APAIHQIVL	9	Unmodified	_APAIHQIVL_					0	0	0		ARID2|p.S1616Rfs*20|1|0.08|ENSG00000189079|chr12:45860874-45860875|-/ACACAAATACTTAACCATTGTGTTACGGT|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2	ARID2|p.S1616Rfs*20|1|0.08|ENSG00000189079|chr12:45860874-45860875|-/ACACAAATACTTAACCATTGTGTTACGGT|frameshift_variant	ARID2|p.S1616Rfs*20|1|0.08|ENSG00000189079|chr12:45860874-45860875|-/ACACAAATACTTAACCATTGTGTTACGGT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.2966613769531	2	481.295102	960.575651	-0.76225	-0.00036687	0.085447	4.1125E-05	-0.67681	-0.00032574	481.2950772231885	93.318	1.3581	90.81	90.513	91.871	-2.5072					61	28	4	0	0	0	0.34496	1	8125	8125		57.811	11.839	1	573940			1851	115	1382	1383	2502	2502					0.09378654548117993
APAKKSTSL	9	Unmodified	_APAKKSTSL_					0	0	0		ENSG00000115808|ENST00000263918|STRN;nc|ENSG00000115808|O43815-2|STRN	ENSG00000115808|ENST00000263918|STRN	ENSG00000115808|ENST00000263918|STRN	MULTI-MSMS	OvCa9_classI_Rep2	2	451.76885986328125	2	451.768917	901.523281	2.6198	0.0011835	-2.6461	-0.0011954	-0.026295	-1.1879E-05	451.7675673313396	30.822	0.83694	28.112	27.903	28.74	-2.7097					33	16	3	0	0	0	0.35444	3	880	874;880;888		56.721	27.571	1	80887			1852	3128	1383	1384	2503;2504;2505	2504					0.06858071414524147
APAKPPRHL	9	Unmodified	_APAKPPRHL_					0	0	0		WDR44-PHF21A|1|fusion;WDR44-PHF21A|2|fusion;nc|ENSG00000131725|Q5JSH3-4|WDR44;nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44	WDR44-PHF21A|1|fusion	WDR44-PHF21A|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.7983703613281	2	493.798343	985.582134	1.0759	0.00053127	-1.3546	-0.00066891	-0.27873	-0.00013764	493.7975038763306	35.91	1.1476	33.061	32.74	33.887	-2.849					37	22	3	0	0	0	0.44294	1	1191	1191		47.916	15.961	1	122010			1853	4085	1384	1385	2506	2506					0.08876592499518665
APAKPPRHL	9	Unmodified	_APAKPPRHL_					0	0	0		WDR44-PHF21A|1|fusion;WDR44-PHF21A|2|fusion;nc|ENSG00000131725|Q5JSH3-4|WDR44;nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44	WDR44-PHF21A|1|fusion	WDR44-PHF21A|1|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	493.798343	985.582134	-2.0213	-0.00099814	0.98508	0.00048643	-1.0363	-0.00051171	493.7986513607547	36.084	0.44921	33.375	32.95	33.4	-2.7097	0.15671	0.0021474	NaN	47.916	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33343			1854	4085	1384	1385							0.08876592499518665
APALGRVGK	9	Unmodified	_APALGRVGK_					0	0	0		nc|ENSG00000197530|Q96AX9-9|MIB2;ENST00000511502.5_1_1:1550926-1563560:+|nuORF;nc|ENSG00000197530|Q96AX9-10|MIB2;nc|ENSG00000197530|Q96AX9-8|MIB2;nc|ENSG00000197530|Q96AX9-7|MIB2;nc|ENSG00000197530|Q96AX9-4|MIB2;ENSG00000197530|ENST00000355826|MIB2;ENST00000507229.5_1_1:1551767-1563881:+|nuORF;nc|ENSG00000197530|Q96AX9-6|MIB2;nc|ENSG00000197530|Q96AX9-3|MIB2;ENST00000479659.5_1_1:1561777-1565907:+|nuORF	nc|ENSG00000197530|Q96AX9-9|MIB2	nc|ENSG00000197530|Q96AX9-9|MIB2	MULTI-MSMS	OvCa9_classI_Rep2	2	434.7702331542969	2	434.771794	867.529036	1.2559	0.00054602	-1.3563	-0.00058966	-0.10039	-4.3645E-05	434.7711959531507	41.911	2.4713	39.201	38.881	41.353	-2.7097					118	49	4	0	0	0	0.52083	2	2311	2291;2311		40.573	7.057	1	2230100			1855	8718	1385	1386	2507;2508	2508					0.08997214716850976
APALPRPLGF	10	Unmodified	_APALPRPLGF_					0	0	0		ENST00000455575.1_1_7:86848849-86849557:-|nuORF	ENST00000455575.1_1_7:86848849-86849557:-|nuORF	ENST00000455575.1_1_7:86848849-86849557:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.8068237304688	2	519.808377	1037.6022	-1.1584	-0.00060212	-3.5592	-0.0018501	-4.7175	-0.0024522	519.8065040186947	40.821	1.6134	37.866	37.58	39.193	-2.9541					79	30	3	0	0	0	0.50656	1	1774	1774		53.351	2.1588	1	1548800			1856	12099	1386	1387	2509	2509					0.08490343439461867
APALRPLVI	9	Unmodified	_APALRPLVI_					0	0	0		nc|ENSG00000245848|P49715-3|CEBPA;nc|ENSG00000245848|P49715-2|CEBPA;ENSG00000245848|ENST00000498907|CEBPA;nc|ENSG00000245848|P49715-4|CEBPA	nc|ENSG00000245848|P49715-3|CEBPA	nc|ENSG00000245848|P49715-3|CEBPA	MULTI-MSMS	OvCa9_classI_Rep2	2	475.3129577636719	2	475.313295	948.612037	-1.0081	-0.00047916	0.74891	0.00035597	-0.25918	-0.00012319	475.31354255988356	103.19	1.4817	102.5	102.18	103.66	-0.68459					75	29	4	0	0	0	0.14739	5	9508	9508;9513;9526;9532;9538		85.359	8.5128	1	611260			1857	9404	1387	1388	2510;2511;2512;2513;2514	2510					0.1356753144484628
APALRPLVI	9	Unmodified	_APALRPLVI_					0	0	0		nc|ENSG00000245848|P49715-3|CEBPA;nc|ENSG00000245848|P49715-2|CEBPA;ENSG00000245848|ENST00000498907|CEBPA;nc|ENSG00000245848|P49715-4|CEBPA	nc|ENSG00000245848|P49715-3|CEBPA	nc|ENSG00000245848|P49715-3|CEBPA	MULTI-MSMS	OvCa9_classI_Rep3	3	475.313232421875	2	475.313295	948.612037	1.1961	0.00056852	-1.5827	-0.00075229	-0.38663	-0.00018377	475.3124611477531	104.01	1.7182	102.58	102.29	104.01	-1.4347					78	32	4	0	0	0	0.21395	4	7228	7228;7234;7241;7247		73.975	8.1716	1	814480			1858	9404	1387	1388	2515;2516;2517;2518	2515					0.1356753144484628
APALRPLVI	9	Unmodified	_APALRPLVI_					0	0	0		nc|ENSG00000245848|P49715-3|CEBPA;nc|ENSG00000245848|P49715-2|CEBPA;ENSG00000245848|ENST00000498907|CEBPA;nc|ENSG00000245848|P49715-4|CEBPA	nc|ENSG00000245848|P49715-3|CEBPA	nc|ENSG00000245848|P49715-3|CEBPA	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.3128967285156	2	475.313295	948.612037	0.16225	7.7118E-05	-0.3194	-0.00015181	-0.15715	-7.4696E-05	475.31302484033773	104.7	1.3709	102.58	102.27	103.64	-2.1192					69	26	4	0	0	0	0.14739	4	9482	9472;9482;9494;9510		85.359	8.5128	1	666240			1859	9404	1387	1388	2519;2520;2521;2522	2520					0.1356753144484628
APALRTAL	8	Unmodified	_APALRTAL_					0	0	0		ENST00000367334.9_1_1:201104135-201104420:-|nuORF	ENST00000367334.9_1_1:201104135-201104420:-|nuORF	ENST00000367334.9_1_1:201104135-201104420:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	406.75299072265625	2	406.75307	811.491587	0.7718	0.00031393	-0.80042	-0.00032557	-0.028618	-1.164E-05	406.7526534816959	74.321	1.5667	72.35	71.587	73.154	-1.9711					79	29	3	0	0	0	0.44269	1	6084	6084		83.287	6.4406	1	298120			1860	10842	1388	1389	2523	2523					0.07830123451208237
APALRTAL	8	Unmodified	_APALRTAL_					0	0	0		ENST00000367334.9_1_1:201104135-201104420:-|nuORF	ENST00000367334.9_1_1:201104135-201104420:-|nuORF	ENST00000367334.9_1_1:201104135-201104420:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	406.75372314453125	2	406.75307	811.491587	1.4584	0.00059319	-1.8701	-0.00076065	-0.4117	-0.00016746	406.75222437717747	75.366	1.2065	72.136	71.867	73.074	-3.2308					63	24	3	0	0	0	0.50674	1	5943	5943		76.847	2.8719	1	669320			1861	10842	1388	1389	2524	2524					0.07830123451208237
APALTLLLL	9	Unmodified	_APALTLLLL_					0	0	0			REV__ENST00000396113.5_2_8:95957780-95970353:+|nuORF	REV__ENST00000396113.5_2_8:95957780-95970353:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.79290771484375	2	462.810054	923.605554	-1.1523	-0.0005333	-1.8594	-0.00086054	-3.0117	-0.0013938	462.80901893863455	55.645	1.0102	52.351	52.11	53.12	-3.2944					33	19	2	0	0	0	0.027462	1	3531	3531		19.36	0	1	102710	+		1862	25327	1389	1390	2525	2525					0.14069593493491084
APALVGIADL	10	Unmodified	_APALVGIADL_					0	0	0			REV__ENSG00000203727|ENST00000367474|SAMD5	REV__ENSG00000203727|ENST00000367474|SAMD5	MULTI-SECPEP	OvCa9_classI_Rep3	3	470.79693603515625	2	470.279118	938.543683	0.40746	0.00019162	-0.34817	-0.00016374	0.059289	2.7882E-05	470.27870118504154	79.689	3.8286	77.349	75.762	79.591	-2.3399					109	75	2	0	0	0	0.026697	1	4335	4335		10.265	0	1	96955	+		1863	23110	1390	1391	2526	2526					0.0719524207431732
APAPAAPAAPA	11	Unmodified	_APAPAAPAAPA_					0	0	0		ENSG00000198648|ENST00000355999|STK39;ENST00000438116.2_1_22:40982808-40983081:-|nuORF	ENSG00000198648|ENST00000355999|STK39	ENSG00000198648|ENST00000355999|STK39	MULTI-SECPEP	OvCa99_classI_Rep5	1	452.2635803222656	2	452.747985	903.481417	0.71691	0.00032458	0.28665	0.00012978	1.0036	0.00045436	452.74795159383643	73.989	0.53734	73.989	73.829	74.366	0					15	13	2	0	0	0	0.025361	1	7345	7345		31.955	0	1	129020			1864	8842	1391	1392	2527	2527					0.025815157259785337
APAPAAQRL	9	Unmodified	_APAPAAQRL_					0	0	0		ENST00000468665.1_1_1:28337454-28343730:-|nuORF;ENST00000471498.5_1_1:28324859-28384546:-|nuORF;nc|ENSG00000158161|Q99504-2|EYA3;nc|ENSG00000158161|Q99504-4|EYA3;nc|ENSG00000158161|Q99504-5|EYA3;nc|ENSG00000158161|Q99504-3|EYA3;ENSG00000158161|ENST00000373871|EYA3	ENST00000468665.1_1_1:28337454-28343730:-|nuORF	ENST00000468665.1_1_1:28337454-28343730:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	447.7617492675781	2	447.761426	893.5083	-0.024628	-1.1027E-05	-2.1838	-0.00097783	-2.2085	-0.00098886	447.7599822112037	52.226	1.5599	49.018	48.692	50.252	-3.208					63	30	4	0	0	0	0.11171	2	3112	3112;3125		94.006	17.16	1	901910			1865	5936	1392	1393	2528;2529	2528					0.057286243371777346
APAPAAQRL	9	Unmodified	_APAPAAQRL_					0	0	0		ENST00000468665.1_1_1:28337454-28343730:-|nuORF;ENST00000471498.5_1_1:28324859-28384546:-|nuORF;nc|ENSG00000158161|Q99504-2|EYA3;nc|ENSG00000158161|Q99504-4|EYA3;nc|ENSG00000158161|Q99504-5|EYA3;nc|ENSG00000158161|Q99504-3|EYA3;ENSG00000158161|ENST00000373871|EYA3	ENST00000468665.1_1_1:28337454-28343730:-|nuORF	ENST00000468665.1_1_1:28337454-28343730:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	447.761426	893.5083	1.1537	0.0005166	-2.9417	-0.0013172	-1.788	-0.0008006	447.75965117113066	51.984	1.5818	49.171	48.848	50.43	-2.8129	0.07643	-0.0003747	NaN	94.006	43	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145340			1866	5936	1392	1393							0.057286243371777346
APAPARASGLK	11	Unmodified	_APAPARASGLK_					0	0	0			REV__ENST00000528318.5_1_8:42716773-42751856:-|nuORF	REV__ENST00000528318.5_1_8:42716773-42751856:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	519.8060913085938	2	519.806365	1037.59818	0.30324	0.00015763	-0.44438	-0.00023099	-0.14114	-7.3364E-05	519.8059790400328	40.39	1.3312	37.68	37.452	38.783	-2.7097					65	26	4	0	0	0	0.59615	1	2053	2053		45.022	2.1579	1	288990	+		1867	27165	1393	1394	2530	2530					0.08088253945743418
APAPIHNQF	9	Unmodified	_APAPIHNQF_					0	0	0		nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;ENST00000570273.5_1_16:56966069-56976120:+|nuORF	nc|ENSG00000051108|Q15011-4|HERPUD1	nc|ENSG00000051108|Q15011-4|HERPUD1	MULTI-MSMS	OvCa9_classI_Rep2	2	497.75897216796875	2	497.758884	993.503215	0.22568	0.00011233	-0.50064	-0.0002492	-0.27496	-0.00013686	497.75847584580197	64.826	2.0516	62.102	61.337	63.389	-2.7245					103	39	4	0	0	0	0.043206	5	4959	4953;4959;4967;4974;4980		123.99	65.806	1	897200			1868	1184	1394	1395	2531;2532;2533;2534;2535	2532					0.006203204745702351
APAPIHNQF	9	Unmodified	_APAPIHNQF_					0	0	0		nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;ENST00000570273.5_1_16:56966069-56976120:+|nuORF	nc|ENSG00000051108|Q15011-4|HERPUD1	nc|ENSG00000051108|Q15011-4|HERPUD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.75927734375	2	497.758884	993.503215	-0.71997	-0.00035837	0.024909	1.2399E-05	-0.69506	-0.00034597	497.7588351011495	65.537	2.4854	62.052	61.358	63.843	-3.4854					132	50	5	0	0	0	0.027215	7	4741	4707;4717;4729;4741;4754;4769;4781		138.48	64.225	1	4388200			1869	1184	1394	1395	2536;2537;2538;2539;2540;2541;2542	2539					0.006203204745702351
APAPLARPL	9	Unmodified	_APAPLARPL_					0	0	0			REV__ENST00000580114.5_3_16:67197575-67198388:+|nuORF	REV__ENST00000580114.5_3_16:67197575-67198388:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	453.2827453613281	2	453.281995	904.549437	-0.87869	-0.00039829	0.49135	0.00022272	-0.38734	-0.00017557	453.2821256321553	82.783	2.1486	80.487	79.836	81.985	-2.2963					79	44	3	0	0	0	0.36502	1	4695	4695		55.504	0	1	898040	+		1870	27819	1395	1396	2543	2543					0.09334385376666887
APAPLEVI	8	Unmodified	_APAPLEVI_					0	0	0			REV__nc|ENSG00000038358|Q6P2E9-2|EDC4	REV__nc|ENSG00000038358|Q6P2E9-2|EDC4	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.88629150390625	2	405.242004	808.469455	1.0189	0.00041292	-4.3644	-0.0017687	-3.3455	-0.0013557	405.2399973036426	35.752	0.41776	35.752	35.475	35.892	0					11	8	2	0	0	0	0.028476	1	1830	1830		14.664	0	1	38036	+		1871	16617	1396	1397	2544	2544					0.057558989827953155
APAPLRAPL	9	Unmodified	_APAPLRAPL_					0	0	0			REV__nc|ENSG00000288658|A0A7I2V3R4|RNF228	REV__nc|ENSG00000288658|A0A7I2V3R4|RNF228	MULTI-MSMS	OvCa9_classI_Rep4_	4	453.2828369140625	2	453.281995	904.549437	0.43409	0.00019677	-0.58858	-0.00026679	-0.15449	-7.0026E-05	453.28155957037893	83.207	1.4917	80.539	80.187	81.679	-2.6687					77	30	4	0	0	0	0.29717	3	6904	6904;6915;6928		63.306	7.8021	1	679520	+		1872	29208	1397	1398	2545;2546;2547	2545					0.0933438537664415
APAPPKAEA	9	Unmodified	_APAPPKAEA_					0	0	0		ENSG00000198242|ENST00000422514|RPL23A;ENST00000399247.6_1_6:29694709-29694913:-|nuORF;ENST00000582736.1_1_17:27047023-27047984:+|nuORF;ENST00000606975.1_1_8:163470-182153:-|nuORF	ENSG00000198242|ENST00000422514|RPL23A;ENST00000606975.1_1_8:163470-182153:-|nuORF	ENSG00000198242|ENST00000422514|RPL23A	MULTI-MSMS	OvCa9_classI_Rep2	2	426.2350158691406	2	426.23471	850.454868	0.32682	0.0001393	0.029346	1.2508E-05	0.35616	0.00015181	426.2345432715742	43.686	0.99394	40.977	40.708	41.702	-2.7097					45	19	4	0	0	0	0.11471	1	2442	2442		93.195	10.89	1	185280			1873	8800;14279	1398	1399	2548	2548					0.023658268346594014
APAPRKVA	8	Unmodified	_APAPRKVA_					0	0	0			REV__nc|ENSG00000106344|Q9NW13-2|RBM28	REV__nc|ENSG00000106344|Q9NW13-2|RBM28	MULTI-MSMS	OvCa99_classI_Rep5	1	405.2568054199219	2	405.253237	808.491922	0.45913	0.00018607	4.3048	0.0017445	4.7639	0.0019306	405.25482244057065	66.012	1.1503	66.012	65.707	66.857	0					62	28	3	0	0	0	0.74679	1	6080	6080		28.254	1.4582	1	4259400	+		1874	17797	1399	1400	2549	2549					0.08001543171087633
APAPRPSL	8	Unmodified	_APAPRPSL_					0	0	0		ENSG00000140829|ENST00000268482|DHX38;DHX38|p.D323Ifs*6|1|0.47|ENSG00000140829|chr16:72099738-72099738|G/-|frameshift_variant;nc|ENSG00000140829|Q92620-2|DHX38	ENSG00000140829|ENST00000268482|DHX38	ENSG00000140829|ENST00000268482|DHX38	MULTI-MSMS	OvCa9_classI_Rep4_	4	404.7386474609375	2	404.73742	807.460287	1.5499	0.00062729	-1.4762	-0.00059749	0.073641	2.9805E-05	404.7367325762309	57.866	1.5121	54.521	54.24	55.752	-3.3449					57	29	4	0	0	0	0.58851	2	3788	3788;3802		66.429	3.2778	1	557430			1875	4875	1400	1401	2550;2551	2550					0.048855504171342545
APAPRPSLL	9	Unmodified	_APAPRPSLL_					0	0	0		ENSG00000140829|ENST00000268482|DHX38;DHX38|p.D323Ifs*6|1|0.47|ENSG00000140829|chr16:72099738-72099738|G/-|frameshift_variant;nc|ENSG00000140829|Q92620-2|DHX38	ENSG00000140829|ENST00000268482|DHX38	ENSG00000140829|ENST00000268482|DHX38	MULTI-MSMS	OvCa9_classI_Rep4_	4	461.2798156738281	2	461.279452	920.544351	-0.77821	-0.00035897	0.44539	0.00020545	-0.33282	-0.00015352	461.2795100457454	77.329	1.8276	74.512	74.145	75.973	-2.8165					85	37	3	0	0	0	0.094616	4	6171	6171;6181;6194;6207		98.629	24.374	1	1290900			1876	4875	1401	1402	2552;2553;2554;2555	2552					0.08090081514046688
APAPRPSLL	9	Unmodified	_APAPRPSLL_					0	0	0		ENSG00000140829|ENST00000268482|DHX38;DHX38|p.D323Ifs*6|1|0.47|ENSG00000140829|chr16:72099738-72099738|G/-|frameshift_variant;nc|ENSG00000140829|Q92620-2|DHX38	ENSG00000140829|ENST00000268482|DHX38	ENSG00000140829|ENST00000268482|DHX38	MULTI-MATCH	OvCa9_classI_Rep2	2		2	461.279452	920.544351	-0.66952	-0.00030884	0.60723	0.0002801	-0.062291	-2.8734E-05	461.2795707849331	76.331	2.4022	74.477	73.837	76.239	-1.854	-0.017623	3.9303E-05	NaN	98.629	104	45	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	410080			1877	4875	1401	1402							0.08090081514046688
APAPSLAYGAP	11	Unmodified	_APAPSLAYGAP_					0	0	0		nc|ENSG00000079432|Q96RK0-2|CIC;CIC|p.K921Rfs*3|1|0.16|ENSG00000079432|chr19:42291620-42291620|A/-|frameshift_variant;CIC|p.V1007Afs*28|1|0.32|ENSG00000079432|chr19:42292310-42292322|GTGCAGTCAGCGG/-|frameshift_variant;ENSG00000079432|ENST00000681038|CIC	nc|ENSG00000079432|Q96RK0-2|CIC;CIC|p.K921Rfs*3|1|0.16|ENSG00000079432|chr19:42291620-42291620|A/-|frameshift_variant	CIC|p.K921Rfs*3|1|0.16|ENSG00000079432|chr19:42291620-42291620|A/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.2731628417969	2	507.766374	1013.5182	-0.54951	-0.00027902	3.9864	0.0020241	3.4368	0.0017451	507.76845035984985	36.168	0.27296	36.168	35.984	36.257	0					8	5	2	0	0	0	0.025909	1	1880	1880		19.997	0.6368	1	44795			1878	580;14898	1402	1403	2556	2556					0.01197767551900597
APAPSLTPLL	10	Unmodified	_APAPSLTPLL_					0	0	0		ENST00000490563.5_1_1:44457782-44457986:+|nuORF	ENST00000490563.5_1_1:44457782-44457986:+|nuORF	ENST00000490563.5_1_1:44457782-44457986:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.2665710449219	2	490.294768	978.574983	-0.32102	-0.0001574	-0.92821	-0.0004551	-1.2492	-0.00061249	490.2932868021973	33.225	0.29689	33.225	33.087	33.384	0					11	5	3	0	0	0	0.026822	1	1495	1495		47.916	15.961	1	22371			1879	12697	1403	1404	2557	2557					0.084838151084341
APAPSRGSVQ	10	Unmodified	_APAPSRGSVQ_					0	0	0		ENST00000482993.6_3_10:135272457-135273512:+|nuORF;ENST00000463137.5_1_10:135271820-135273512:+|nuORF;nc|ENSG00000214279|Q4G0T1-3|SCART1;ENST00000488261.6_3_10:135271820-135304727:+|nuORF;ENSG00000214279|ENST00000640237|SCART1	ENST00000482993.6_3_10:135272457-135273512:+|nuORF	ENST00000482993.6_3_10:135272457-135273512:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.27459716796875	2	485.259248	968.503943	-0.82792	-0.00040175	0.93788	0.00045511	0.10996	5.3359E-05	485.25948967086134	45.708	1.9207	42.669	42.178	44.099	-3.0385					87	36	3	0	0	0	0.026548	1	2343	2343		72.879	0	1	171170			1880	9168	1404	1405	2558	2558					0.01843115123631378
APAPSTVHF	9	Unmodified	_APAPSTVHF_					0	0	0		nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10	nc|ENSG00000155090|Q13118-2|KLF10	nc|ENSG00000155090|Q13118-2|KLF10	MULTI-MSMS	OvCa9_classI_Rep2	2	463.7402648925781	2	463.74016	925.465767	0.036871	1.7098E-05	-0.43124	-0.00019998	-0.39437	-0.00018288	463.7396734025738	72.591	1.6177	70.191	69.436	71.054	-2.3999					77	30	4	0	0	0	0.17908	1	5887	5887		79.939	15.732	1	559570			1881	5768	1405	1406	2559	2559					5.229208954915521E-05
APAPSTVHF	9	Unmodified	_APAPSTVHF_					0	0	0		nc|ENSG00000155090|Q13118-2|KLF10;ENSG00000155090|ENST00000285407|KLF10	nc|ENSG00000155090|Q13118-2|KLF10	nc|ENSG00000155090|Q13118-2|KLF10	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.7407531738281	2	463.74016	925.465767	-1.1805	-0.00054743	-0.48266	-0.00022383	-1.6631	-0.00077126	463.73963255044697	73.593	2.1603	70.197	69.495	71.655	-3.3961					96	44	4	0	0	0	0.032351	4	5727	5703;5713;5727;5740		133.47	63.841	1	2256700			1882	5768	1405	1406	2560;2561;2562;2563	2562					5.229208954915521E-05
APAPTARNKL	10	Unmodified	_APAPTARNKL_					0	0	0		ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	MULTI-MSMS	OvCa9_classI_Rep2	2	519.8064575195312	2	519.806365	1037.59818	0.30324	0.00015763	-0.44438	-0.00023099	-0.14114	-7.3364E-05	519.8059790400328	40.39	1.3312	37.68	37.452	38.783	-2.7097					65	26	4	0	0	0	0.55359	1	2059	2059		47.657	1.7054	1	288990			1883	6327	1406	1407	2564	2564					0.08088253945743418
APAPTARNKL	10	Unmodified	_APAPTARNKL_					0	0	0		ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.8063354492188	2	519.806365	1037.59818	-1.1584	-0.00060212	0.31029	0.00016129	-0.84807	-0.00044083	519.8065040186947	40.821	1.6134	37.866	37.58	39.193	-2.9541					79	30	3	0	0	0	0.40664	2	1784	1784;1810		67.494	9.977	1	1548800			1884	6327	1406	1407	2565;2566	2565					0.08088253945743418
APAPTARNKL	10	Unmodified	_APAPTARNKL_					0	0	0		ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	MULTI-MATCH	OvCa99_classI_Rep5	1		2	519.806365	1037.59818	-1.1651	-0.00060561	0.12829	6.6687E-05	-1.0368	-0.00053892	519.8066518727544	37.626	0.27592	37.626	37.438	37.714	0	-0.097907	0.00021159	NaN	67.494	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17677			1885	6327	1406	1407							0.08088253945743418
APAPVGPLVGL	11	Unmodified	_APAPVGPLVGL_					0	0	0		nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2;nc|ENSG00000153071|P98082-2|DAB2	nc|ENSG00000153071|P98082-3|DAB2	nc|ENSG00000153071|P98082-3|DAB2	MULTI-MSMS	OvCa9_classI_Rep3	3	495.80096435546875	2	495.80276	989.590967	0.25835	0.00012809	-0.60387	-0.0002994	-0.34552	-0.00017131	495.8023876292267	130.3	1.0385	129.19	128.78	129.82	-1.1121					34	20	2	0	0	0	0.69331	2	10322	10322;10339		31.955	6.5047	1	54401			1886	5659	1407	1408	2567;2568	2567					0.09575521345345805
APAPVGPLVGL	11	Unmodified	_APAPVGPLVGL_					0	0	0		nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2;nc|ENSG00000153071|P98082-2|DAB2	nc|ENSG00000153071|P98082-3|DAB2	nc|ENSG00000153071|P98082-3|DAB2	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.8022155761719	2	495.80276	989.590967	2.7675	0.0013721	-3.2389	-0.0016058	-0.47141	-0.00023372	495.8010455800342	130.6	2.8271	129.13	127.57	130.4	-1.4779					94	57	3	0	0	0	0.64499	1	12533	12533		40.573	3.4135	1	84961			1887	5659	1407	1408	2569	2569					0.09575521345345805
APAQRAQSL	9	Unmodified	_APAQRAQSL_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;ENST00000590400.1_1_19:11303345-11305238:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	OvCa9_classI_Rep2	2	471.26165771484375	2	471.261791	940.509028	0.91393	0.0004307	-0.94375	-0.00044475	-0.029824	-1.4055E-05	471.26121103422037	42.062	0.59187	39.352	39.029	39.621	-2.7097					30	11	3	0	0	0	0.11471	3	2244	2244;2256;2263		93.195	27.392	1	251840			1888	8694	1408	1409	2570;2571;2572	2570					0.03639418986244891
APAQRAQSL	9	Unmodified	_APAQRAQSL_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;ENST00000590400.1_1_19:11303345-11305238:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.2628173828125	2	471.261791	940.509028	-0.26951	-0.00012701	0.15156	7.1423E-05	-0.11795	-5.5585E-05	471.26179767204025	42.123	1.0745	39.142	38.491	39.566	-2.9804					52	20	3	0	0	0	0.030815	3	1940	1928;1940;1953		134.81	47.056	1	971270			1889	8694	1408	1409	2573;2574;2575	2574					0.03639418986244891
APARGLLLF	9	Unmodified	_APARGLLLF_					0	0	0		nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST	nc|ENSG00000021574|Q9UBP0-4|SPAST	nc|ENSG00000021574|Q9UBP0-4|SPAST	MULTI-MSMS	OvCa9_classI_Rep2	2	479.2976989746094	2	479.297645	956.580737	-0.75064	-0.00035978	0.51879	0.00024865	-0.23185	-0.00011113	479.29773010897736	115.4	1.335	115.29	115	116.33	-0.11777					67	26	3	0	0	0	0.52083	4	11039	11002;11008;11039;11047		40.573	3.6435	1	535680			1890	1026	1409	1410	2576;2577;2578;2579	2578					0.10070958410756248
APARGLLLF	9	Unmodified	_APARGLLLF_					0	0	0		nc|ENSG00000021574|Q9UBP0-4|SPAST;nc|ENSG00000021574|Q9UBP0-3|SPAST;nc|ENSG00000021574|Q9UBP0-2|SPAST;ENSG00000021574|ENST00000315285|SPAST	nc|ENSG00000021574|Q9UBP0-4|SPAST	nc|ENSG00000021574|Q9UBP0-4|SPAST	MULTI-MSMS	OvCa9_classI_Rep3	3	479.2974548339844	2	479.297645	956.580737	-0.26237	-0.00012575	0.061204	2.9335E-05	-0.20117	-9.6419E-05	479.29752817551383	116.42	1.3352	115.38	115	116.33	-1.0414					70	26	3	0	0	0	0.55588	1	8693	8693		37.159	0	1	529340			1891	1026	1409	1410	2580	2580					0.10070958410756248
APARLDRRATF	11	Unmodified	_APARLDRRATF_					0	0	0		ENST00000234091.8_1_2:8822018-8822156:+|nuORF	ENST00000234091.8_1_2:8822018-8822156:+|nuORF	ENST00000234091.8_1_2:8822018-8822156:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	424.8929138183594	3	425.242311	1272.7051	-0.3434	-0.00014603	-1.1297	-0.00048041	-1.4731	-0.00062644	425.2416476151197	37.974	0.44764	37.974	37.806	38.254	0					13	9	2	0	0	0	0.026099	1	2150	2150		17.833	12.691	1	74035			1892	9736	1410	1411	2581	2581					0.07965804160107837
APARLFAL	8	Unmodified	_APARLFAL_					0	0	0		ENSG00000124145|ENST00000372733|SDC4;nc|ENSG00000124145|P31431-2|SDC4	ENSG00000124145|ENST00000372733|SDC4	ENSG00000124145|ENST00000372733|SDC4	MULTI-MSMS	OvCa9_classI_Rep2	2	429.7633056640625	2	429.763438	857.512323	-1.5304	-0.0006577	1.4114	0.00060659	-0.11893	-5.1111E-05	429.763969967034	101.21	2.0796	100.45	99.923	102	-0.76401					99	41	4	0	0	0	0.23304	10	9305	9265;9269;9274;9279;9286;9293;9299;9305;9311;9319		119.22	23.173	1	1393300			1893	3627	1411	1412	2582;2583;2584;2585;2586;2587;2588;2589;2590;2591	2589					0.07786713830898861
APARLFAL	8	Unmodified	_APARLFAL_					0	0	0		ENSG00000124145|ENST00000372733|SDC4;nc|ENSG00000124145|P31431-2|SDC4	ENSG00000124145|ENST00000372733|SDC4	ENSG00000124145|ENST00000372733|SDC4	MULTI-MSMS	OvCa9_classI_Rep3	3	429.76409912109375	2	429.763438	857.512323	-0.13627	-5.8562E-05	-0.02592	-1.1139E-05	-0.16219	-6.9702E-05	429.7633762265129	102.07	2.1993	100.55	100.11	102.31	-1.5211					109	41	4	0	0	0	0.31087	10	7013	6991;6995;7000;7007;7013;7019;7025;7031;7039;7045		105.27	12.251	1	1776600			1894	3627	1411	1412	2592;2593;2594;2595;2596;2597;2598;2599;2600;2601	2596					0.07786713830898861
APARLFAL	8	Unmodified	_APARLFAL_					0	0	0		ENSG00000124145|ENST00000372733|SDC4;nc|ENSG00000124145|P31431-2|SDC4	ENSG00000124145|ENST00000372733|SDC4	ENSG00000124145|ENST00000372733|SDC4	MULTI-MSMS	OvCa9_classI_Rep4_	4	429.7637634277344	2	429.763438	857.512323	0.53828	0.00023133	-0.51867	-0.00022291	0.019606	8.4259E-06	429.7631616996793	102.8	2.2528	100.6	100.15	102.4	-2.1994					92	42	4	0	0	0	0.31087	6	9250	9250;9260;9272;9284;9297;9311		105.27	12.251	1	1652500			1895	3627	1411	1412	2602;2603;2604;2605;2606;2607	2602					0.07786713830898861
APARLFALL	9	Unmodified	_APARLFALL_					0	0	0		ENSG00000124145|ENST00000372733|SDC4;nc|ENSG00000124145|P31431-2|SDC4	ENSG00000124145|ENST00000372733|SDC4	ENSG00000124145|ENST00000372733|SDC4	MULTI-MSMS	OvCa9_classI_Rep2	2	486.30609130859375	2	486.30547	970.596387	0.60247	0.00029298	-1.3637	-0.00066315	-0.76119	-0.00037017	486.3047947264386	124.97	2.7662	124.74	124.37	127.13	-0.2359					156	55	5	0	0	0	0.21395	9	12166	12159;12166;12178;12184;12190;12196;12202;12208;12226		73.975	23.813	1	3410600			1896	3627	1412	1413	2608;2609;2610;2611;2612;2613;2614;2615;2616	2609					0.10991244927799926
APARLFALL	9	Unmodified	_APARLFALL_					0	0	0		ENSG00000124145|ENST00000372733|SDC4;nc|ENSG00000124145|P31431-2|SDC4	ENSG00000124145|ENST00000372733|SDC4	ENSG00000124145|ENST00000372733|SDC4	MULTI-MSMS	OvCa9_classI_Rep3	3	486.30487060546875	2	486.30547	970.596387	0.86253	0.00041945	-1.5289	-0.00074351	-0.66637	-0.00032406	486.3047324036629	126.22	3.5173	125.15	124.71	128.23	-1.0715					158	68	5	0	0	0	0.21395	9	9862	9839;9844;9850;9862;9892;9904;9911;9918;9930		73.975	23.38	1	3175900			1897	3627	1412	1413	2617;2618;2619;2620;2621;2622;2623;2624;2625	2620					0.10991244927799926
APARLFALL	9	Unmodified	_APARLFALL_					0	0	0		ENSG00000124145|ENST00000372733|SDC4;nc|ENSG00000124145|P31431-2|SDC4	ENSG00000124145|ENST00000372733|SDC4	ENSG00000124145|ENST00000372733|SDC4	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.30487060546875	2	486.30547	970.596387	-1.8727	-0.00091069	1.17	0.00056898	-0.70267	-0.00034171	486.3060163931478	126.56	4.5912	125.14	124.48	129.07	-1.4143					192	91	5	0	0	0	0.38529	2	12064	12064;12100		53.351	5.4358	1	3302400			1898	3627	1412	1413	2626;2627	2626					0.10991244927799926
APARLLLPLL	10	Unmodified	_APARLLLPLL_					0	0	0		ENSG00000020181|ENST00000412232|ADGRA2;nc|ENSG00000020181|Q96PE1-2|ADGRA2;nc|ENSG00000020181|Q96PE1-3|ADGRA2	ENSG00000020181|ENST00000412232|ADGRA2	ENSG00000020181|ENST00000412232|ADGRA2	MULTI-MSMS	OvCa9_classI_Rep3	3	538.863525390625	2	538.863152	1075.71175	0.50313	0.00027112	-1.3946	-0.0007515	-0.89148	-0.00048038	538.8625358740957	133.13	11.263	132	131.63	142.9	-1.1249					494	228	5	0	0	0	0.58282	1	11033	11033		44.117	6.9577	1	10229000			1899	1021	1413	1414	2628	2628					0.17692349058802392
APARLPAAP	9	Unmodified	_APARLPAAP_					0	0	0		ENST00000427004.5_1_6:33378256-33380059:+|nuORF	ENST00000427004.5_1_6:33378256-33380059:+|nuORF	ENST00000427004.5_1_6:33378256-33380059:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	432.2596740722656	2	432.25852	862.502486	0.80294	0.00034708	-0.63536	-0.00027464	0.16758	7.244E-05	432.2581094075444	57.8	1.8659	54.455	54.035	55.901	-3.3449					66	36	3	0	0	0	0.42057	1	3760	3760		50.025	0	1	361690			1900	11748	1414	1415	2629	2629					0.06573525825501747
APARPKTK	8	Unmodified	_APARPKTK_					0	0	0		ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	MULTI-MSMS	OvCa9_classI_Rep2	2	434.7723693847656	2	434.771794	867.529036	1.2559	0.00054602	-1.3563	-0.00058966	-0.10039	-4.3645E-05	434.7711959531507	41.911	2.4713	39.201	38.881	41.353	-2.7097					118	49	4	0	0	0	0.62934	1	2207	2207		57.811	2.3071	1	2230100			1901	4764	1415	1416	2630	2630					0.08997214716839608
APASALVRIPL	11	Unmodified	_APASALVRIPL_					0	0	0		ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MSMS	OvCa9_classI_Rep2	2	554.3475952148438	2	554.347866	1106.68118	1.1308	0.00062683	-1.4722	-0.0008161	-0.34143	-0.00018927	554.3469192911033	113.51	0.93861	113.4	113.17	114.11	-0.11777					40	18	3	0	0	0	0.20362	4	10781	10770;10777;10781;10789		79.489	38.062	1	124060			1902	3284	1416	1417	2631;2632;2633;2634	2633					0.13210570673754773
APASALVRIPL	11	Unmodified	_APASALVRIPL_					0	0	0		ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MSMS	OvCa9_classI_Rep3	3	554.34716796875	2	554.347866	1106.68118	-0.33143	-0.00018373	-0.060324	-3.344E-05	-0.39175	-0.00021717	554.3476947790737	114.34	0.99785	113.28	113	114	-1.055					46	19	3	0	0	0	0.068862	2	8450	8444;8450		104.01	59.636	1	138000			1903	3284	1416	1417	2635;2636	2636					0.13210570673754773
APASALVRIPL	11	Unmodified	_APASALVRIPL_					0	0	0		ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.3469848632812	2	554.347866	1106.68118	0.81097	0.00044956	-1.2297	-0.00068166	-0.41869	-0.0002321	554.3470727654566	114.66	1.0786	113.26	112.99	114.07	-1.3977					50	20	3	0	0	0	0.051425	2	10660	10649;10660		114.89	63.702	1	161290			1904	3284	1416	1417	2637;2638	2638					0.13210570673754773
APASQRSI	8	Unmodified	_APASQRSI_					0	0	0		ENSG00000128285|ENST00000249016|MCHR1	ENSG00000128285|ENST00000249016|MCHR1	ENSG00000128285|ENST00000249016|MCHR1	MULTI-MSMS	OvCa99_classI_Rep5	1	415.22943115234375	2	415.229959	828.445365	0.0002574	1.0688E-07	-0.23728	-9.8525E-05	-0.23702	-9.8418E-05	415.2298480863063	39.941	0.81452	39.941	39.711	40.526	0					26	17	3	0	0	0	0.71369	1	2396	2396		40.573	2.7611	1	415040			1905	3875	1417	1418	2639	2639					0.024280585491396778
APASRLLAL	9	Unmodified	_APASRLLAL_					0	0	0		ENST00000568689.5_1_16:733170-734340:-|nuORF;ENST00000567120.5_1_16:734232-734409:-|nuORF;ENST00000565302.5_1_16:733531-734319:-|nuORF;nc|ENSG00000161999|Q96S16-2|JMJD8;ENSG00000161999|ENST00000609261|JMJD8;ENST00000569441.5_1_16:734052-734319:-|nuORF	ENST00000568689.5_1_16:733170-734340:-|nuORF	ENST00000568689.5_1_16:733170-734340:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.2882995605469	2	456.287277	910.560001	-0.18968	-8.6547E-05	-0.12303	-5.6135E-05	-0.3127	-0.00014268	456.28708404653634	96.033	1.5566	93.607	93.154	94.711	-2.4256					80	30	4	0	0	0	0.35694	2	8460	8460;8472		56.434	10.482	1	321250			1906	13871	1418	1419	2640;2641	2640					0.10114368031076992
APASRLLAL	9	Unmodified	_APASRLLAL_					0	0	0		ENST00000568689.5_1_16:733170-734340:-|nuORF;ENST00000567120.5_1_16:734232-734409:-|nuORF;ENST00000565302.5_1_16:733531-734319:-|nuORF;nc|ENSG00000161999|Q96S16-2|JMJD8;ENSG00000161999|ENST00000609261|JMJD8;ENST00000569441.5_1_16:734052-734319:-|nuORF	ENST00000568689.5_1_16:733170-734340:-|nuORF	ENST00000568689.5_1_16:733170-734340:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	456.287277	910.560001	0.66	0.00030115	-0.6099	-0.00027829	0.0501	2.286E-05	456.2869028728602	94.522	1.3325	93.422	93.062	94.395	-1.0995	-0.066073	-0.00055096	NaN	56.434	81	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	284300			1907	13871	1418	1419							0.10114368031076992
APASRLLAL	9	Unmodified	_APASRLLAL_					0	0	0		ENST00000568689.5_1_16:733170-734340:-|nuORF;ENST00000567120.5_1_16:734232-734409:-|nuORF;ENST00000565302.5_1_16:733531-734319:-|nuORF;nc|ENSG00000161999|Q96S16-2|JMJD8;ENSG00000161999|ENST00000609261|JMJD8;ENST00000569441.5_1_16:734052-734319:-|nuORF	ENST00000568689.5_1_16:733170-734340:-|nuORF	ENST00000568689.5_1_16:733170-734340:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	456.287277	910.560001	-0.60659	-0.00027678	0.55077	0.00025131	-0.055818	-2.5469E-05	456.2874293176842	95.331	1.494	93.435	93.111	94.605	-1.8956	-0.052932	0.00050824	NaN	56.434	76	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	368920			1908	13871	1418	1419							0.10114368031076992
APAVLRDNRSL	11	Unmodified	_APAVLRDNRSL_					0	0	0			REV__tr|A0A553SGY7|A0A553SGY7_NIACIMannitol-1-phosphate5-dehydrogenaseOS=NialliacirculansOX=1397GN=mtlDPE=3SV=1	REV__tr|A0A553SGY7|A0A553SGY7_NIACIMannitol-1-phosphate5-dehydrogenaseOS=NialliacirculansOX=1397GN=mtlDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	404.5677185058594	3	404.566683	1210.67822	1.4857	0.00060107	-1.6283	-0.00065876	-0.1426	-5.769E-05	404.5660077907759	58.263	1.5035	54.918	54.546	56.049	-3.3449					68	29	3	0	0	0	0.69099	1	3836	3836		32.751	1.1163	1	954190	+		1909	29752	1419	1420	2642	2642					0.0813069554892536
APAVLRPLA	9	Unmodified	_APAVLRPLA_					0	0	0			REV__ENSG00000062822|ENST00000440232|POLD1	REV__ENSG00000062822|ENST00000440232|POLD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	454.29083251953125	2	454.28982	906.565087	-0.24063	-0.00010932	-0.84482	-0.00038379	-1.0854	-0.00049311	454.2893519907911	101.14	1.2667	98.872	98.498	99.765	-2.2665					43	25	2	0	0	0	0.59983	1	9071	9071		31.955	0	1	148460	+		1910	16755	1420	1421	2643	2643					0.1080667189369251
APAVPALRL	9	Unmodified	_APAVPALRL_					0	0	0		ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1;TPCN1|p.L334Ffs*42|1|0.26|ENSG00000186815|chr12:113276977-113276978|-/TGAGACAGAGACTTGCTCTGTTGCCCAGGCTGTA|frameshift_variant;TPCN1|p.A407Vfs*15|1|0.26|ENSG00000186815|chr12:113278223-113278224|-/T|frameshift_variant;ENST00000552077.5_1_12:113664633-113726187:+|nuORF;ENST00000428632.7_1_12:113682520-113726187:+|nuORF	ENSG00000186815|ENST00000335509|TPCN1	ENSG00000186815|ENST00000335509|TPCN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	454.2893981933594	2	454.28982	906.565087	-0.24063	-0.00010932	-0.84482	-0.00038379	-1.0854	-0.00049311	454.2893519907911	101.14	1.2667	98.872	98.498	99.765	-2.2665					43	25	2	0	0	0	0.52083	1	9084	9084		40.573	7.057	1	148460			1911	8364	1421	1422	2644	2644					0.10806671893703879
APAVPALRL	9	Unmodified	_APAVPALRL_					0	0	0		ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1;TPCN1|p.L334Ffs*42|1|0.26|ENSG00000186815|chr12:113276977-113276978|-/TGAGACAGAGACTTGCTCTGTTGCCCAGGCTGTA|frameshift_variant;TPCN1|p.A407Vfs*15|1|0.26|ENSG00000186815|chr12:113278223-113278224|-/T|frameshift_variant;ENST00000552077.5_1_12:113664633-113726187:+|nuORF;ENST00000428632.7_1_12:113682520-113726187:+|nuORF	ENSG00000186815|ENST00000335509|TPCN1	ENSG00000186815|ENST00000335509|TPCN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	454.28982	906.565087	0.77927	0.00035401	-0.85726	-0.00038945	-0.077997	-3.5433E-05	454.2893229600024	99.735	1.1901	98.905	98.567	99.757	-0.83051	0.0071503	-0.00013127	NaN	40.573	47	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135810			1912	8364	1421	1422							0.10806671893703879
APAVPALRL	9	Unmodified	_APAVPALRL_					0	0	0		ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1;TPCN1|p.L334Ffs*42|1|0.26|ENSG00000186815|chr12:113276977-113276978|-/TGAGACAGAGACTTGCTCTGTTGCCCAGGCTGTA|frameshift_variant;TPCN1|p.A407Vfs*15|1|0.26|ENSG00000186815|chr12:113278223-113278224|-/T|frameshift_variant;ENST00000552077.5_1_12:113664633-113726187:+|nuORF;ENST00000428632.7_1_12:113682520-113726187:+|nuORF	ENSG00000186815|ENST00000335509|TPCN1	ENSG00000186815|ENST00000335509|TPCN1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	454.28982	906.565087	-0.67674	-0.00030743	-0.023415	-1.0637E-05	-0.70015	-0.00031807	454.2897172425375	100.52	1.2548	98.917	98.612	99.866	-1.6053	0.018876	0.00062635	NaN	40.573	56	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197340			1913	8364	1421	1422							0.10806671893703879
APAWDPFL	8	Unmodified	_APAWDPFL_					0	0	0			REV__nc|ENSG00000160285|P48449-2|LSS	REV__nc|ENSG00000160285|P48449-2|LSS	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.23883056640625	2	458.731803	915.449054	-0.25543	-0.00011717	-3.2053	-0.0014704	-3.4607	-0.0015875	458.73009216900095	56.305	0.55445	53.011	52.769	53.323	-3.2944					15	10	2	0	0	0	0.028476	1	3611	3611		37.028	17.032	1	30398	+		1914	20652	1422	1423	2645	2645					-0.01205271677008568
APCPECPHLK	10	Carbamidomethyl (C)	_APCPEC(Carbamidomethyl (C))PHLK_	APCPEC(1)PHLK		APC(-72)PEC(72)PHLK		0	1	0		ENST00000562570.1_1_16:1025898-1026216:-|nuORF	ENST00000562570.1_1_16:1025898-1026216:-|nuORF	ENST00000562570.1_1_16:1025898-1026216:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	576.2717895507812	2	576.270444	1150.52633	-1.5193	-0.00087553	0.56271	0.00032427	-0.9566	-0.00055126	576.2706103402052	45.347	1.3568	42.309	42.023	43.38	-3.0385					69	25	4	0	0	0	0.12182	1	2315	2315		108.09	30.77	2	457550			1915	13775	1423	1424	2646	2646	156				-0.04290744794661805
APDDTVEPLL	10	Unmodified	_APDDTVEPLL_					0	0	0		ENSG00000189339|ENST00000617444|SLC35E2B;ENST00000480991.1_1_1:1597223-1601267:-|nuORF	ENSG00000189339|ENST00000617444|SLC35E2B	ENSG00000189339|ENST00000617444|SLC35E2B	MULTI-MSMS	OvCa99_classI_Rep5	1	535.2753295898438	2	535.274229	1068.53391	1.7497	0.00093657	0.47766	0.00025568	2.2274	0.0011922	535.2743740035442	129.56	2.3123	129.56	128.84	131.15	0					122	48	5	0	0	0	0.45225	1	15022	15022		60.972	0.67798	1	4983700			1916	8551	1424	1425	2647	2647					0.002380092783141663
APDFALARAF	10	Unmodified	_APDFALARAF_					0	0	0			REV__tr|A0A553SFY1|A0A553SFY1_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09695PE=4SV=1	REV__tr|A0A553SFY1|A0A553SFY1_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09695PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	538.7877807617188	2	539.787641	1077.56073	-1.547	-0.00083506	-3.4615	-0.0018685	-5.0085	-0.0027035	540.2876875508231	49.04	0.29644	46.28	46.127	46.424	-2.7603					7	5	2	0	0	0	0.027021	1	3084	3084		29.15	2.4566	1	8737.2	+		1917	29634	1425	1426	2648	2648					0.02505162680131434
APDKKKQKL	9	Unmodified	_APDKKKQKL_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MSMS	OvCa9_classI_Rep2	2	528.3320922851562	2	528.332216	1054.64988	3.0268	0.0015991	-3.0942	-0.0016348	-0.067462	-3.5642E-05	528.330384856165	25.512	0.98969	22.802	22.428	23.418	-2.7097					46	22	4	0	0	0	0.35694	2	256	256;270		56.434	10.462	1	151950			1918	2997	1426	1427	2649;2650	2649					0.12473997639654044
APDVARALL	9	Unmodified	_APDVARALL_					0	0	0		ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468|AGRN;nc|ENSG00000188157|O00468-2|AGRN	ENSG00000188157|ENST00000379370|AGRN	ENSG00000188157|ENST00000379370|AGRN	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.27716064453125	2	463.276909	924.539266	-1.4006	-0.00064887	1.2851	0.00059537	-0.11548	-5.3499E-05	463.277397939556	95.253	1.9586	92.784	91.86	93.819	-2.4685					74	38	3	0	0	0	0.22621	1	8364	8364		71.877	9.7701	1	449030			1919	8454	1427	1428	2651	2651					0.07397777651419801
APDVARALL	9	Unmodified	_APDVARALL_					0	0	0		ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468|AGRN;nc|ENSG00000188157|O00468-2|AGRN	ENSG00000188157|ENST00000379370|AGRN	ENSG00000188157|ENST00000379370|AGRN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	463.276909	924.539266	-0.34072	-0.00015785	0.41908	0.00019415	0.078364	3.6304E-05	463.27698393987555	93.942	1.8288	92.843	92.072	93.901	-1.0995	0.054264	-0.00039386	NaN	71.877	75	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	309840			1920	8454	1427	1428							0.07397777651419801
APDVARALL	9	Unmodified	_APDVARALL_					0	0	0		ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468|AGRN;nc|ENSG00000188157|O00468-2|AGRN	ENSG00000188157|ENST00000379370|AGRN	ENSG00000188157|ENST00000379370|AGRN	MULTI-MATCH	OvCa9_classI_Rep3	3		2	463.276909	924.539266	-0.68037	-0.0003152	0.65432	0.00030313	-0.026047	-1.2067E-05	463.27710289689816	94.634	1.8648	92.738	91.898	93.763	-1.8956	-0.05018	-0.0001759	NaN	71.877	80	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	458060			1921	8454	1427	1428							0.07397777651419801
APEEHPVL	8	Unmodified	_APEEHPVL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ACTB|p.K238Rfs*46|1|0.21|ENSG00000075624|chr7:5528372-5528372|C/-|frameshift_variant;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OvCa9_classI_Rep2	2	446.2325134277344	2	446.232168	890.449782	1.2074	0.00053876	-1.2437	-0.00055497	-0.036335	-1.6214E-05	446.2314996021734	60.669	1.2659	57.899	57.396	58.661	-2.7702					68	23	4	0	0	0	0.40641	3	4476	4476;4482;4489		86.935	25.476	1	408610			1922	1537;8634	1428	1429	2652;2653;2654	2652					0.0001752297204120623
APEEHPVL	8	Unmodified	_APEEHPVL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ACTB|p.K238Rfs*46|1|0.21|ENSG00000075624|chr7:5528372-5528372|C/-|frameshift_variant;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OvCa9_classI_Rep4_	4	446.2334289550781	2	446.232168	890.449782	0.43486	0.00019405	-0.57021	-0.00025444	-0.13535	-6.0396E-05	446.23172765045297	61.199	1.5494	57.769	57.194	58.743	-3.43					97	31	6	0	0	0	0.14363	5	4183	4171;4183;4195;4208;4222		134.12	54.18	1	2056800			1923	1537;8634	1428	1429	2655;2656;2657;2658;2659	2656					0.0001752297204120623
APEEHPVL	8	Unmodified	_APEEHPVL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ACTB|p.K238Rfs*46|1|0.21|ENSG00000075624|chr7:5528372-5528372|C/-|frameshift_variant;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MATCH	OvCa99_classI_Rep5	1		2	446.232168	890.449782	0.9798	0.00043722	4.9282	0.0021991	5.908	0.0026363	446.23635907253237	58.019	0.33522	58.019	57.859	58.194	0	0.12361	0.0050162	NaN	134.12	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117310			1924	1537;8634	1428	1429							0.0001752297204120623
APELLRALL	9	Unmodified	_APELLRALL_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3150634765625	2	498.316035	994.617516	0.55174	0.00027494	-0.48275	-0.00024056	0.06899	3.4379E-05	498.3156463482989	126.1	1.233	125.86	125.55	126.79	-0.2359					55	24	3	0	0	0	0.34132	1	12301	12301		58.23	10.573	1	137750			1925	1565	1429	1430	2660	2660					0.11999210236660929
APFDREPFTL	10	Unmodified	_APFDREPFTL_					0	0	0		ENSG00000043462|ENST00000046794|LCP2	ENSG00000043462|ENST00000046794|LCP2	ENSG00000043462|ENST00000046794|LCP2	MULTI-MSMS	OvCa9_classI_Rep2	2	596.80322265625	2	596.803488	1191.59242	-0.1024	-6.1115E-05	-0.43271	-0.00025824	-0.53512	-0.00031936	596.8031960961883	113.63	0.98775	113.51	113.22	114.21	-0.11777					34	19	2	0	0	0	0.62712	1	10787	10787		38.754	0.94209	1	95418			1926	1129	1430	1431	2661	2661					0.004291106434266112
APFEPLASGIL	11	Unmodified	_APFEPLASGIL_					0	0	0		ENSG00000102265|ENST00000218388|TIMP1;TIMP1|p.W16Kfs*55|1|0.05|ENSG00000102265|chrX:47583460-47583461|-/AAAATAAAGGGATGGAAAAATATAT|frameshift_variant	ENSG00000102265|ENST00000218388|TIMP1	ENSG00000102265|ENST00000218388|TIMP1	MULTI-MSMS	OvCa9_classI_Rep2	2	557.81103515625	2	557.810782	1113.60701	-1.5435	-0.00086096	1.4622	0.00081564	-0.081249	-4.5322E-05	557.8114782865623	144.9	1.3416	144.68	144.34	145.68	-0.22696					84	26	5	0	0	0	0.053927	9	14588	14574;14578;14582;14588;14594;14600;14606;14620;14626		125.81	46.101	1	532460			1927	2234	1431	1432	2662;2663;2664;2665;2666;2667;2668;2669;2670	2665					0.0547518279158794
APFEPLASGIL	11	Unmodified	_APFEPLASGIL_					0	0	0		ENSG00000102265|ENST00000218388|TIMP1;TIMP1|p.W16Kfs*55|1|0.05|ENSG00000102265|chrX:47583460-47583461|-/AAAATAAAGGGATGGAAAAATATAT|frameshift_variant	ENSG00000102265|ENST00000218388|TIMP1	ENSG00000102265|ENST00000218388|TIMP1	MULTI-MSMS	OvCa9_classI_Rep3	3	557.8109130859375	2	557.810782	1113.60701	-3.7502	-0.0020919	3.5107	0.0019583	-0.23955	-0.00013362	557.8126676020494	145.58	1.5914	144.61	144.29	145.88	-0.97301					90	31	4	0	0	0	0.070528	9	12185	12175;12179;12185;12191;12197;12203;12209;12215;12223		134.81	55.098	1	788550			1928	2234	1431	1432	2671;2672;2673;2674;2675;2676;2677;2678;2679	2673					0.0547518279158794
APFEPLASGIL	11	Unmodified	_APFEPLASGIL_					0	0	0		ENSG00000102265|ENST00000218388|TIMP1;TIMP1|p.W16Kfs*55|1|0.05|ENSG00000102265|chrX:47583460-47583461|-/AAAATAAAGGGATGGAAAAATATAT|frameshift_variant	ENSG00000102265|ENST00000218388|TIMP1	ENSG00000102265|ENST00000218388|TIMP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.8112182617188	2	557.810782	1113.60701	-0.44838	-0.00025011	0.49582	0.00027658	0.047439	2.6462E-05	557.8109927845255	146.06	1.578	144.62	144.25	145.82	-1.4357					89	30	5	0	0	0	0.092746	4	14349	14327;14337;14349;14387		98.629	26.752	1	878120			1929	2234	1431	1432	2680;2681;2682;2683	2682					0.0547518279158794
APFLRNVEL	9	Unmodified	_APFLRNVEL_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MSMS	OvCa9_classI_Rep2	2	529.8040161132812	2	529.803291	1057.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.24	1	103.67	103.17	104.17	-0.57639								0	0	0	0.03228	1	9646	9646		87.696	7.7572	1				1930	3691	1432	1433	2684	2684					0.06553735714237519
APFLRNVEL	9	Unmodified	_APFLRNVEL_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MSMS	OvCa9_classI_Rep2	2	529.8031616210938	2	529.803291	1057.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.29	1	103.71	103.21	104.21	-0.57639								0	0	0	0.026006	1	9651	9651		122.18	42.463	1				1931	3691	1432	1433	2685	2685					0.06553735714237519
APFLRNVEL	9	Unmodified	_APFLRNVEL_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MSMS	OvCa9_classI_Rep2	2	529.8026123046875	2	529.803291	1057.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.34	1	103.76	103.26	104.26	-0.57639								0	0	0	0.028532	1	9657	9657		110.12	27.879	1				1932	3691	1432	1433	2686	2686					0.06553735714237519
APFLRNVEL	9	Unmodified	_APFLRNVEL_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MSMS	OvCa9_classI_Rep2	2	529.802001953125	2	529.803291	1057.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.39	1	103.81	103.31	104.31	-0.57639								0	0	0	0.016902	1	9663	9663		134.81	44.034	1				1933	3691	1432	1433	2687	2687					0.06553735714237519
APFLRNVEL	9	Unmodified	_APFLRNVEL_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MSMS	OvCa9_classI_Rep2	2	529.8021850585938	2	529.803291	1057.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.44	1	103.86	103.36	104.36	-0.57639								0	0	0	0.024758	1	9669	9669		93.195	2.4188	1				1934	3691	1432	1433	2688	2688					0.06553735714237519
APFLRNVEL	9	Unmodified	_APFLRNVEL_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MSMS	OvCa9_classI_Rep2	2	529.8016967773438	2	529.803291	1057.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.49	1	103.91	103.41	104.41	-0.57639								0	0	0	0.028532	1	9675	9675		110.12	27.879	1				1935	3691	1432	1433	2689	2689					0.06553735714237519
APFLRNVEL	9	Unmodified	_APFLRNVEL_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MSMS	OvCa9_classI_Rep2	2	529.802001953125	2	529.803291	1057.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.54	1	103.96	103.46	104.46	-0.57639								0	0	0	0.039743	1	9681	9681		82.241	18.934	1				1936	3691	1432	1433	2690	2690					0.06553735714237519
APFLSRTLL	9	Unmodified	_APFLSRTLL_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000198589|P50851-2|LRBA	ENSG00000172915|ENST00000379939|NBEA	MULTI-MSMS	OvCa9_classI_Rep3	3	509.30816650390625	2	509.30821	1016.60187	0.10074	5.1308E-05	-0.47632	-0.00024259	-0.37558	-0.00019128	509.3078646236339	110.29	0.84051	109.14	108.87	109.71	-1.1444					41	15	3	0	0	0	0.22621	1	7969	7969		71.877	3.0906	1	152990			1937	7329;8832	1433	1434	2691	2691					0.09422923719614573
APFLSRTLL	9	Unmodified	_APFLSRTLL_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000198589|P50851-2|LRBA	ENSG00000172915|ENST00000379939|NBEA	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.30865478515625	2	509.30821	1016.60187	0.47753	0.00024321	-0.66743	-0.00033993	-0.18989	-9.6713E-05	509.3077167329326	110.81	0.84142	109.2	108.91	109.75	-1.6011					41	15	3	0	0	0	0.14855	1	10204	10204		85.161	17.667	1	186070			1938	7329;8832	1433	1434	2692	2692					0.09422923719614573
APFLSRTLL	9	Unmodified	_APFLSRTLL_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA;nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000198589|P50851-2|LRBA	ENSG00000172915|ENST00000379939|NBEA	MULTI-MATCH	OvCa9_classI_Rep2	2		2	509.30821	1016.60187	-0.036937	-1.8812E-05	-0.51349	-0.00026153	-0.55043	-0.00028034	509.30785388226826	109.2	1.1877	109.02	108.46	109.65	-0.18361	-0.10227	2.942E-05	NaN	85.161	63	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143430			1939	7329;8832	1433	1434							0.09422923719614573
APFYHLLFC	9	Unmodified	_APFYHLLFC_					0	0	0		ENST00000515541.1_1_4:79838951-79847783:-|nuORF	ENST00000515541.1_1_4:79838951-79847783:-|nuORF	ENST00000515541.1_1_4:79838951-79847783:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	555.7789916992188	2	555.775688	1109.53682	1.3083	0.0007271	3.5151	0.0019536	4.8234	0.0026807	555.7773660861806	143.07	0.72984	143.07	142.69	143.41	0					31	14	3	0	0	0	0.53728	1	16718	16718		39.021	0.21535	1	125610			1940	13049	1434	1435	2693	2693					-0.013563940778794858
APGADVVFLAE	11	Unmodified	_APGADVVFLAE_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa9_classI_Rep2	2	543.820068359375	2	544.784764	1087.55498	-1.2927	-0.00070424	0.55982	0.00030498	-0.73288	-0.00039926	544.7850056011773	102.29	1.4807	101.61	101.34	102.82	-0.68459					63	28	3	0	0	0	0.025521	1	9448	9448		30.318	6.795	1	203590			1941	5793;36288	1435	1436	2694	2694					0.014700193778026005
APGADVVFLAE	11	Unmodified	_APGADVVFLAE_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	OvCa99_classI_Rep5	1		2	544.784764	1087.55498	0.70612	0.00038468	1.937	0.0010552	2.6431	0.0014399	544.7856501130652	101.93	0.85389	101.93	101.69	102.55	0	0.2572	0.0015449	NaN	30.318	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1524800			1942	5793;36288	1435	1436							0.014700193778026005
APGFINFLK	9	Unmodified	_APGFINFLK_					0	0	0		chr6:109250991-109254448|247|18.56|0.13|7.16|+|1|TE_info:L1PA2,L1PA2_dup2028,L1,LINE,donor,-,109245219,109250991|None,CCDC162P|62;L1PA2_dup23|chr1:43114528-43120516:-|1.3533449411662286|0.3152228216366226|2.1|404.0|271|2|anti-sense;L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|248|1|anti-sense;L1PA3_dup1152|chr2:117623254-117629278:+|1.1606400945596698|0.0841542146032081|3.79|394.0|332|3|anti-sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.448906025747238|0.1317034148076854|3.46|417.0|324|3|anti-sense;chr8:91197524-91200613|99|17.84|0.22|6.31|+|2|TE_info:L1PA3,L1PA3_dup5484,L1,LINE,donor,-,91191845,91197524|None,LRRC69|52;chr8:127290060-127311920|177|24.08|0.02|9.95|-|2|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311920,127315431|CASC8,None|14;chr8:127290060-127311835|201|15.36|0.0|11.84|-|1|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|14;chr3:195070111-195087933|297|11.33|0.27|5.37|-|1|TE_info:L1PA2,L1PA2_dup1050,L1,LINE,donor,+,195087933,195093677|XXYLT1,None|63;chr3:189023348-189023750|247|10.3|0.01|9.43|+|1|TE_info:L1PA3,L1PA3_dup2320,L1,LINE,donor,-,189017230,189023348|None,TPRG1|75	chr6:109250991-109254448|247|18.56|0.13|7.16|+|1|TE_info:L1PA2,L1PA2_dup2028,L1,LINE,donor,-,109245219,109250991|None,CCDC162P|62	chr6:109250991-109254448|247|18.56|0.13|7.16|+|1|TE_info:L1PA2,L1PA2_dup2028,L1,LINE,donor,-,109245219,109250991|None,CCDC162P|62	MULTI-SECPEP	OvCa9_classI_Rep2	2	503.77813720703125	2	503.789653	1005.56475	-3.2391	-0.0016318	2.9527	0.0014876	-0.28632	-0.00014425	503.79096804736974	36.52	0.19699	33.81	33.696	33.893	-2.7097					5	3	2	0	0	0	0.027456	1	1563	1563		47.916	8.8941	1	11201			1943	506	1436	1437	2695	2695					0.062192521738552387
APGGGAPLRR	10	Unmodified	_APGGGAPLRR_					0	0	0		ENST00000504956.5_1_4:87856195-87856345:+|nuORF	ENST00000504956.5_1_4:87856195-87856345:+|nuORF	ENST00000504956.5_1_4:87856195-87856345:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.32208251953125	2	476.277775	950.540997	1.0843	0.00051641	2.2854	0.0010885	3.3696	0.0016049	476.27875605395474	110.83	0.73625	109.23	108.96	109.7	-1.6011					25	13	3	0	0	0	0.026697	1	10228	10228		37.159	5.2042	1	19604			1944	12882	1437	1438	2696	2696					0.06374831460027508
APGGGAPLRR	10	Unmodified	_APGGGAPLRR_					0	0	0		ENST00000504956.5_1_4:87856195-87856345:+|nuORF	ENST00000504956.5_1_4:87856195-87856345:+|nuORF	ENST00000504956.5_1_4:87856195-87856345:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	476.277775	950.540997	-0.038313	-1.8248E-05	3.4646	0.0016501	3.4262	0.0016318	476.27930247927077	109.51	0.74278	109.34	109.17	109.91	-0.17237	0.07816	0.00090001	NaN	37.159	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19778			1945	12882	1437	1438							0.06374831460027508
APGGRTGVPL	10	Unmodified	_APGGRTGVPL_					0	0	0			REV__ENST00000591998.5_1_19:9408151-9413133:-|nuORF	REV__ENST00000591998.5_1_19:9408151-9413133:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	462.7677307128906	2	462.766709	923.518865	-1.6143	-0.00074706	2.0664	0.00095627	0.45208	0.00020921	462.76749070870113	38.258	1.04	35.548	35.37	36.41	-2.7097					45	20	4	0	0	0	0.5675	1	1785	1785		45.972	3.4978	1	313510	+		1946	27941	1438	1439	2697	2697					0.054046069916125816
APGIRDHESL	10	Unmodified	_APGIRDHESL_					0	0	0		ENST00000482651.5_1_1:156713243-156717241:-|nuORF;ENST00000465180.5_1_1:156713243-156725382:-|nuORF;nc|ENSG00000143321|P51858-2|HDGF;ENSG00000143321|ENST00000357325|HDGF;nc|ENSG00000143321|P51858-3|HDGF	ENST00000482651.5_1_1:156713243-156717241:-|nuORF	ENST00000482651.5_1_1:156713243-156717241:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.7844848632812	2	547.783087	1093.55162	-1.1993	-0.00065697	0.89866	0.00049227	-0.30067	-0.0001647	547.7834522432984	53.892	1.6395	50.645	50.364	52.004	-3.2474					58	31	3	0	0	0	0.53807	1	3311	3311		49.536	10.283	1	320540			1947	5034	1439	1440	2698	2698					0.008587693238041538
APGIRDHESL	10	Unmodified	_APGIRDHESL_					0	0	0		ENST00000482651.5_1_1:156713243-156717241:-|nuORF;ENST00000465180.5_1_1:156713243-156725382:-|nuORF;nc|ENSG00000143321|P51858-2|HDGF;ENSG00000143321|ENST00000357325|HDGF;nc|ENSG00000143321|P51858-3|HDGF	ENST00000482651.5_1_1:156713243-156717241:-|nuORF	ENST00000482651.5_1_1:156713243-156717241:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	547.783087	1093.55162	-0.99271	-0.00054379	0.51878	0.00028418	-0.47393	-0.00025961	547.7832445704233	53.592	1.0941	50.778	50.379	51.473	-2.8139	0.066683	-0.00031721	NaN	49.536	52	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64112			1948	5034	1439	1440							0.008587693238041538
APGKKTSGL	9	Unmodified	_APGKKTSGL_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000561171.5_1_15:79170562-79187198:+|nuORF;MORF4L1-PSMA4|1|fusion;MORF4L1-PSMA4|2|fusion;ENST00000559619.5_1_15:79165359-79179692:+|nuORF;ENST00000447135.2_1_4:174537089-174537971:-|nuORF;ENST00000558522.5_1_15:79165359-79183469:+|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENST00000558522.5_1_15:79165359-79183469:+|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	OvCa9_classI_Rep2	2	429.756103515625	2	429.75581	857.497067	-0.065104	-2.7979E-05	0.19038	8.1818E-05	0.12528	5.3839E-05	429.75572507805686	31.13	0.63941	28.42	28.15	28.789	-2.7097					31	12	3	0	0	0	0.55588	2	917	905;917		37.159	3.6476	1	162230			1949	8283;13699	1440	1441	2699;2700	2700					0.06261802243045622
APGKRILVL	9	Unmodified	_APGKRILVL_					0	0	0		nc|ENSG00000151657|O60870-2|KIN;ENSG00000151657|ENST00000379562|KIN;ATP5C1-KIN|1|fusion	nc|ENSG00000151657|O60870-2|KIN	nc|ENSG00000151657|O60870-2|KIN	MULTI-MSMS	OvCa9_classI_Rep2	2	483.8268737792969	2	483.826569	965.638586	-0.14602	-7.0646E-05	-0.096711	-4.6791E-05	-0.24273	-0.00011744	483.8264345241618	72.943	1.2553	70.543	70.167	71.422	-2.3999					60	23	4	0	0	0	0.22961	5	5940	5916;5922;5928;5934;5940		71.296	34.137	1	717880			1950	131	1441	1442	2701;2702;2703;2704;2705	2705					0.1543922033616809
APGKRILVL	9	Unmodified	_APGKRILVL_					0	0	0		nc|ENSG00000151657|O60870-2|KIN;ENSG00000151657|ENST00000379562|KIN;ATP5C1-KIN|1|fusion	nc|ENSG00000151657|O60870-2|KIN	nc|ENSG00000151657|O60870-2|KIN	MULTI-MSMS	OvCa9_classI_Rep3	3	483.8263244628906	2	483.826569	965.638586	-0.22688	-0.00010977	-0.22374	-0.00010825	-0.45063	-0.00021803	483.8263767801661	72.988	1.3382	70.501	70.133	71.471	-2.4873					75	26	5	0	0	0	0.16524	9	3522	3506;3512;3517;3522;3528;3534;3540;3547;3555		82.305	39.341	1	1302500			1951	131	1441	1442	2706;2707;2708;2709;2710;2711;2712;2713;2714	2709					0.1543922033616809
APGKRILVL	9	Unmodified	_APGKRILVL_					0	0	0		nc|ENSG00000151657|O60870-2|KIN;ENSG00000151657|ENST00000379562|KIN;ATP5C1-KIN|1|fusion	nc|ENSG00000151657|O60870-2|KIN	nc|ENSG00000151657|O60870-2|KIN	MULTI-MSMS	OvCa9_classI_Rep4_	4	483.8277587890625	2	483.826569	965.638586	-0.4196	-0.00020301	0.091517	4.4278E-05	-0.32808	-0.00015873	483.82649229840723	74.398	1.1942	71.167	70.769	71.963	-3.2308					63	24	4	0	0	0	0.31747	4	5799	5799;5811;5825;5836		60.972	27.456	1	829740			1952	131	1441	1442	2715;2716;2717;2718	2715					0.1543922033616809
APGLPEKGFDV	11	Unmodified	_APGLPEKGFDV_					0	0	0			REV__ENST00000455397.5_1_1:151337021-151341586:-|nuORF	REV__ENST00000455397.5_1_1:151337021-151341586:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.2955932617188	2	565.298039	1128.58152	2.4712	0.001397	-2.5126	-0.0014203	-0.041322	-2.3359E-05	565.2966442874052	98.706	0.20544	98.706	98.596	98.801	0					6	4	2	0	0	0	0.025701	1	10886	10886		22.58	5.8623	1	599690	+		1953	19840	1442	1443	2719	2719					0.022377082691491523
APGLRLVL	8	Unmodified	_APGLRLVL_					0	0	0		ENST00000395808.7_1_19:890970-891072:-|nuORF;ENSG00000087448|ENST00000381271|KLHL42	ENST00000395808.7_1_19:890970-891072:-|nuORF	ENST00000395808.7_1_19:890970-891072:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	419.7794494628906	2	419.779088	837.543623	-2.4572	-0.0010315	2.0176	0.00084696	-0.43955	-0.00018451	419.77988107242913	107.65	0.92791	105.77	105.49	106.41	-1.8785					34	18	2	0	0	0	0.66704	1	9839	9839		50.025	7.5501	1	128670			1954	1774	1443	1444	2720	2720					0.1183528686497084
APGLRLVL	8	Unmodified	_APGLRLVL_					0	0	0		ENST00000395808.7_1_19:890970-891072:-|nuORF;ENSG00000087448|ENST00000381271|KLHL42	ENST00000395808.7_1_19:890970-891072:-|nuORF	ENST00000395808.7_1_19:890970-891072:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	419.779088	837.543623	0.12095	5.0774E-05	0.055357	2.3238E-05	0.17631	7.4012E-05	419.77899523332565	106.15	0.8975	105.71	105.4	106.3	-0.43642	-0.063263	-2.3997E-05	NaN	50.025	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79135			1955	1774	1443	1444							0.1183528686497084
APGLRLVL	8	Unmodified	_APGLRLVL_					0	0	0		ENST00000395808.7_1_19:890970-891072:-|nuORF;ENSG00000087448|ENST00000381271|KLHL42	ENST00000395808.7_1_19:890970-891072:-|nuORF	ENST00000395808.7_1_19:890970-891072:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	419.779088	837.543623	1.0786	0.00045278	-1.6885	-0.00070878	-0.60985	-0.000256	419.7782708275473	107.1	1.097	105.83	105.53	106.62	-1.267	0.060172	-0.001488	NaN	50.025	35	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153350			1956	1774	1443	1444							0.1183528686497084
APGLYRTL	8	Unmodified	_APGLYRTL_					0	0	0			REV__ENST00000589867.2_1_18:47803200-47806373:-|nuORF	REV__ENST00000589867.2_1_18:47803200-47806373:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	445.7594909667969	2	445.758352	889.502152	0.33174	0.00014788	-0.47125	-0.00021006	-0.13951	-6.2188E-05	445.75798297872035	83.692	1.4698	81.029	80.681	82.15	-2.6629					64	30	4	0	0	0	0.50674	1	6963	6963		76.847	0.072494	1	775600	+		1957	19755	1444	1445	2721	2721					0.05298106105669831
APGPGRKEL	9	Unmodified	_APGPGRKEL_					0	0	0		ENSG00000139725|ENST00000267205|RHOF;nc|ENSG00000139725|Q9HBH0-2|RHOF	ENSG00000139725|ENST00000267205|RHOF	ENSG00000139725|ENST00000267205|RHOF	MULTI-MSMS	OvCa9_classI_Rep2	2	462.7677307128906	2	462.766709	923.518865	-1.6143	-0.00074706	2.0664	0.00095627	0.45208	0.00020921	462.76749070870113	38.258	1.04	35.548	35.37	36.41	-2.7097					45	20	4	0	0	0	0.42676	2	1773	1773;1779		49.442	3.3386	1	313510			1958	4800	1445	1446	2722;2723	2722					0.054046069916125816
APGPGRKEL	9	Unmodified	_APGPGRKEL_					0	0	0		ENSG00000139725|ENST00000267205|RHOF;nc|ENSG00000139725|Q9HBH0-2|RHOF	ENSG00000139725|ENST00000267205|RHOF	ENSG00000139725|ENST00000267205|RHOF	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.7676696777344	2	462.766709	923.518865	-0.092424	-4.2771E-05	0.83413	0.00038601	0.74171	0.00034324	462.7672213722957	38.259	1.2392	35.332	35.156	36.395	-2.9264					71	24	4	0	0	0	0.27001	1	1478	1478		66.429	2.222	1	1304900			1959	4800	1445	1446	2724	2724					0.054046069916125816
APGPGRKEL	9	Unmodified	_APGPGRKEL_					0	0	0		ENSG00000139725|ENST00000267205|RHOF;nc|ENSG00000139725|Q9HBH0-2|RHOF	ENSG00000139725|ENST00000267205|RHOF	ENSG00000139725|ENST00000267205|RHOF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	462.766709	923.518865	-0.13118	-6.0708E-05	0.84197	0.00038964	0.71079	0.00032893	462.7672127693134	35.638	0.279	35.638	35.52	35.799	0	0.13157	-0.00057639	NaN	66.429	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33817			1960	4800	1445	1446							0.054046069916125816
APGPQLGRR	9	Unmodified	_APGPQLGRR_					0	0	0			REV__ENST00000349310.7_1_14:105261854-105262055:-|nuORF	REV__ENST00000349310.7_1_14:105261854-105262055:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.2655334472656	2	476.277775	950.540997	-1.9625	-0.00093469	0.49783	0.00023711	-1.4647	-0.00069758	476.2778563295421	126.41	0.19133	124.99	124.88	125.07	-1.4143					5	3	2	0	0	0	0.027462	1	12032	12032		23.042	0	1	8606.7	+		1961	24715	1446	1447	2725	2725					0.06374831460038877
APGPRGSYL	9	Unmodified	_APGPRGSYL_					0	0	0		ENST00000510871.5_1_4:40427923-40438677:-|nuORF;ENSG00000163694|ENST00000295971|RBM47	ENST00000510871.5_1_4:40427923-40438677:-|nuORF	ENST00000510871.5_1_4:40427923-40438677:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	459.2464599609375	2	459.245609	916.476666	-0.76167	-0.00034979	0.32847	0.00015085	-0.43319	-0.00019894	459.24552418432546	61.2	1.8011	58.441	57.83	59.631	-2.7593					72	34	3	0	0	0	0.31747	1	4543	4543		60.972	7.6205	1	220200			1962	6347	1447	1448	2726	2726					0.015086315832377295
APGPRGSYL	9	Unmodified	_APGPRGSYL_					0	0	0		ENST00000510871.5_1_4:40427923-40438677:-|nuORF;ENSG00000163694|ENST00000295971|RBM47	ENST00000510871.5_1_4:40427923-40438677:-|nuORF	ENST00000510871.5_1_4:40427923-40438677:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	459.24627685546875	2	459.245609	916.476666	-0.18391	-8.4462E-05	-0.74235	-0.00034092	-0.92627	-0.00042538	459.2451303587808	61.862	1.7275	58.405	57.963	59.691	-3.4577					84	35	3	0	0	0	0.21231	3	4269	4258;4269;4280		74.255	18.751	1	1057900			1963	6347	1447	1448	2727;2728;2729	2728					0.015086315832377295
APGPSQPRQV	10	Unmodified	_APGPSQPRQV_					0	0	0		ENST00000504771.2_1_5:118691243-118691579:+|nuORF	ENST00000504771.2_1_5:118691243-118691579:+|nuORF	ENST00000504771.2_1_5:118691243-118691579:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.7799072265625	2	518.780348	1035.54614	-1.2287	-0.00063741	0.18854	9.781E-05	-1.0401	-0.0005396	518.7804455688876	41.702	1.5448	38.722	38.388	39.933	-2.9804					74	29	3	0	0	0	0.62299	1	1924	1924		39.253	0	1	1689300			1964	12880	1448	1449	2730	2730					0.029790905319941885
APGPVPGWGLL	11	Unmodified	_APGPVPGWGLL_					0	0	0		ENST00000602726.1_1_19:49631857-49632262:+|nuORF	ENST00000602726.1_1_19:49631857-49632262:+|nuORF	ENST00000602726.1_1_19:49631857-49632262:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.3353881835938	2	532.300384	1062.58622	-2.0564	-0.0010946	-2.5769	-0.0013717	-4.6332	-0.0024663	532.2989144272129	44.627	0.5076	41.588	41.464	41.971	-3.0385					15	9	2	0	0	0	0.025652	1	2230	2230		24.203	0	1	49029			1965	14249	1449	1450	2731	2731					0.05742637202570222
APGQRVGML	9	Oxidation (M)	_APGQRVGM(Oxidation (M))L_		APGQRVGM(1)L		APGQRVGM(82)L	0	0	1		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.7540283203125	2	472.752744	943.490935	-0.23791	-0.00011247	1.2763	0.00060336	1.0384	0.00049089	472.75269109502915	54.571	1.3834	51.323	50.774	52.157	-3.2474					79	26	4	0	0	0	0.16524	1	3403	3403		82.305	13.82	1	733420			1966	1470	1450	1451	2732	2732		53			0.016929607398878943
APGQRVGML	9	Oxidation (M)	_APGQRVGM(Oxidation (M))L_					0	0	1		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	472.752744	943.490935	-1.18	-0.00055785	0.87612	0.00041419	-0.30388	-0.00014366	472.75303978857795	54.511	1.397	51.697	51.075	52.472	-2.8139	0.18702	-4.6963E-05	NaN	82.305	45	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157800			1967	1470	1450	1451				53			0.016929607398878943
APGQRVGML	9	Unmodified	_APGQRVGML_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF	ENSG00000072310|ENST00000261646|SREBF1	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	464.7557373046875	2	464.755287	927.496021	0.79748	0.00037063	-0.50157	-0.00023311	0.29592	0.00013753	464.755030791239	67.403	0.44711	63.913	63.59	64.037	-3.4902					22	8	3	0	0	0	0.071436	2	4946	4946;4959		106.42	26.476	1	655740			1968	1470	1450	1452	2733;2734	2733					0.029372646024967253
APGRAQPLF	9	Unmodified	_APGRAQPLF_					0	0	0			REV__nc|ENSG00000229921|Q9Y6Z4-2|KIF25-AS1	REV__nc|ENSG00000229921|Q9Y6Z4-2|KIF25-AS1	MSMS	OvCa9_classI_Rep4_	4	478.7673645019531	2	478.769252	955.52395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.541	1	42.503	42.003	43.003	-3.0385								0	0	0	0.17045	1	2332	2332		50.025	7.5501	1		+		1969	29144	1451	1453	2735	2735					0.044409108542254216
APGSARRPL	9	Unmodified	_APGSARRPL_					0	0	0		ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1	ENSG00000185896|ENST00000332556|LAMP1	ENSG00000185896|ENST00000332556|LAMP1	MULTI-MSMS	OvCa9_classI_Rep2	2	462.77276611328125	2	462.772326	923.530098	-1.9809	-0.0009167	1.6802	0.00077755	-0.30068	-0.00013915	462.77307246916536	37.809	0.68848	35.1	34.781	35.469	-2.7097					48	13	5	0	0	0	0.13482	6	1725	1713;1725;1731;1743;1761;1767		87.754	34.403	1	1223600			1970	8298	1452	1454	2736;2737;2738;2739;2740;2741	2737					0.0652742908575874
APGSARRPL	9	Unmodified	_APGSARRPL_					0	0	0		ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1	ENSG00000185896|ENST00000332556|LAMP1	ENSG00000185896|ENST00000332556|LAMP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.7718505859375	2	462.772326	923.530098	0.22356	0.00010346	-0.98816	-0.00045729	-0.7646	-0.00035384	462.7719192791278	37.709	0.99509	34.816	34.442	35.437	-2.8925					62	19	4	0	0	0	0.14998	4	1429	1405;1417;1429;1441		84.916	34.3	1	3768700			1971	8298	1452	1454	2742;2743;2744;2745	2744					0.0652742908575874
APGSLPQRV	9	Unmodified	_APGSLPQRV_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16;nc|ENSG00000221843|Q68DN1|SPATA31H1	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-MSMS	OvCa9_classI_Rep2	2	462.7676696777344	2	462.766709	923.518865	-1.6143	-0.00074706	2.0664	0.00095627	0.45208	0.00020921	462.76749070870113	38.258	1.04	35.548	35.37	36.41	-2.7097					45	20	4	0	0	0	0.5811	1	1807	1807		34.173	0.65696	1	313510			1972	9229	1453	1455	2746	2746					0.054046069916125816
APGSRLPIN	9	Unmodified	_APGSRLPIN_					0	0	0			REV__ENST00000486282.6_1_1:110163774-110168851:+|nuORF	REV__ENST00000486282.6_1_1:110163774-110168851:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.7682800292969	2	462.766709	923.518865	-0.092424	-4.2771E-05	0.83413	0.00038601	0.74171	0.00034324	462.7672213722957	38.259	1.2392	35.332	35.156	36.395	-2.9264					71	24	4	0	0	0	0.31747	1	1490	1490		60.972	6.1956	1	1304900	+		1973	26583	1454	1456	2747	2747					0.0540460699162395
APGVRAVEL	9	Unmodified	_APGVRAVEL_					0	0	0		nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	MULTI-MSMS	OvCa9_classI_Rep2	2	456.26910400390625	2	456.269084	910.523616	0.51017	0.00023277	-0.86133	-0.000393	-0.35116	-0.00016022	456.2686208083656	76.237	2.4962	74.383	73.429	75.925	-1.854					107	47	4	0	0	0	0.094616	5	6288	6282;6288;6293;6298;6305		98.629	24.374	1	747900			1974	3637	1455	1457	2748;2749;2750;2751;2752	2749					0.06477491134376123
APGVRAVEL	9	Unmodified	_APGVRAVEL_					0	0	0		nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	MULTI-MSMS	OvCa9_classI_Rep3	3	456.2695007324219	2	456.269084	910.523616	-0.69255	-0.00031599	0.13578	6.1954E-05	-0.55677	-0.00025404	456.26914637588345	76.207	2.3266	73.835	73.008	75.334	-2.3715					95	44	4	0	0	0	0.064985	6	3908	3903;3908;3913;3919;3926;3933		110.12	13.929	1	1795800			1975	3637	1455	1457	2753;2754;2755;2756;2757;2758	2754					0.06477491134376123
APGVRAVEL	9	Unmodified	_APGVRAVEL_					0	0	0		nc|ENSG00000124226|Q9Y508-2|RNF114;ENSG00000124226|ENST00000244061|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	nc|ENSG00000124226|Q9Y508-2|RNF114	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.2696228027344	2	456.269084	910.523616	-0.16052	-7.3241E-05	-0.51844	-0.00023655	-0.67897	-0.00030979	456.26878341156055	77.184	1.6472	74.368	74.048	75.696	-2.8165					84	33	4	0	0	0	0.064985	4	6157	6149;6157;6169;6182		110.12	13.929	1	2093500			1976	3637	1455	1457	2759;2760;2761;2762	2760					0.06477491134376123
APGVRVLSL	9	Unmodified	_APGVRVLSL_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.2872619628906	2	456.287277	910.560001	-0.12853	-5.8645E-05	-0.036846	-1.6813E-05	-0.16537	-7.5457E-05	456.2871330314648	94.24	1.2331	91.772	91.478	92.711	-2.4685					44	24	2	0	0	0	0.16524	1	8261	8261		82.305	0	1	246510			1977	9552	1456	1458	2763	2763					0.1011436803109973
APGVVRGPAF	10	Unmodified	_APGVVRGPAF_					0	0	0		ENST00000502695.1_1_15:42114172-42114769:+|nuORF	ENST00000502695.1_1_15:42114172-42114769:+|nuORF	ENST00000502695.1_1_15:42114172-42114769:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.7786865234375	2	485.777077	969.5396	0.11284	5.4817E-05	-1.162	-0.00056445	-1.0491	-0.00050963	485.77651440473693	47.516	2.1496	44.408	43.927	46.076	-3.1077					127	41	4	0	0	0	0.28791	1	2624	2624		82.305	4.9875	1	5266400			1978	12852	1457	1459	2764	2764					0.053611973712804684
APGWLKPR	8	Unmodified	_APGWLKPR_					0	0	0			REV__ENST00000301073.3_1_19:56114321-56114453:+|nuORF	REV__ENST00000301073.3_1_19:56114321-56114453:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	462.77203369140625	2	462.774337	923.534121	-1.9809	-0.0009167	-2.6661	-0.0012338	-4.647	-0.0021505	462.77307246916536	37.809	0.68848	35.1	34.781	35.469	-2.7097					48	13	5	0	0	0	0.67106	1	1755	1755		49.211	5.094	1	1223600	+		1979	24247	1458	1460	2765	2765					0.06929518579454452
APHLSKVSM	9	Oxidation (M)	_APHLSKVSM(Oxidation (M))_		APHLSKVSM(1)		APHLSKVSM(90)	0	0	1		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.259765625	2	493.260402	984.506251	-0.68062	-0.00033572	-0.10301	-5.0813E-05	-0.78363	-0.00038654	493.2602393167206	41.242	1.5426	38.262	37.918	39.461	-2.9804					83	29	5	0	0	0	0.12515	3	1839	1817;1826;1839		90.37	32.559	1	914450			1980	5286	1459	1461	2766;2767;2768	2768		172			0.013378275370769188
APHRPAPAL	9	Unmodified	_APHRPAPAL_					0	0	0		nc|ENSG00000148180|P06396|GSN	nc|ENSG00000148180|P06396|GSN	nc|ENSG00000148180|P06396|GSN	MULTI-MSMS	OvCa9_classI_Rep2	2	465.2696533203125	2	465.269419	928.524284	-0.47784	-0.00022232	0.54983	0.00025582	0.071987	3.3493E-05	465.26949167825006	46.479	1.2385	43.77	43.349	44.588	-2.7097					47	24	3	0	0	0	0.42057	2	2779	2772;2779		50.025	9.2464	1	222960		+	1981	15081	1460	1462	2769;2770	2770					0.057163305740687065
APHRPAPAL	9	Unmodified	_APHRPAPAL_					0	0	0		nc|ENSG00000148180|P06396|GSN	nc|ENSG00000148180|P06396|GSN	nc|ENSG00000148180|P06396|GSN	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.27008056640625	2	465.269419	928.524284	-0.38119	-0.00017735	-0.43554	-0.00020265	-0.81673	-0.00038	465.2691749392389	46.857	1.7266	43.785	43.45	45.176	-3.0724					80	33	5	0	0	0	0.25214	2	2493	2481;2493		68.485	12.98	1	790200		+	1982	15081	1460	1462	2771;2772	2772					0.057163305740687065
APHRRAPH	8	Unmodified	_APHRRAPH_					0	0	0			REV__nc|ENSG00000237149|A6NEH8|ZNF503-AS2	REV__nc|ENSG00000237149|A6NEH8|ZNF503-AS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.26287841796875	2	471.262459	940.510366	-0.33325	-0.00015705	-1.6781	-0.00079083	-2.0114	-0.00094788	471.2615896536289	42.834	1.1541	39.827	39.539	40.693	-3.0074					55	21	3	0	0	0	0.68312	1	2057	2057		46.766	4.292	1	1011100	+		1983	25657	1461	1463	2773	2773					0.03773097865644104
APHTHERHAWQ	11	Unmodified	_APHTHERHAWQ_					0	0	0			REV__nc|ENSG00000179603|O00222-2|GRM8	REV__nc|ENSG00000179603|O00222-2|GRM8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.58074951171875	3	457.221798	1368.64356	-0.086218	-3.9421E-05	1.1664	0.00053332	1.0802	0.00049389	457.2225287312811	21.243	0.90897	19.905	19.412	20.321	-1.3386					27	18	3	0	0	0	0.026145	1	183	183		17.833	0	1	13617	+		1984	22131	1462	1464	2774	2774					-0.026011275391510935
APIAKVGVL	9	Unmodified	_APIAKVGVL_					0	0	0		nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1	nc|ENSG00000050405|Q9UHB6-2|LIMA1	nc|ENSG00000050405|Q9UHB6-2|LIMA1	MULTI-MSMS	OvCa9_classI_Rep2	2	434.28741455078125	2	434.286746	866.558939	-1.001	-0.00043474	0.37425	0.00016253	-0.62679	-0.00027221	434.28692322042684	84.338	4.2474	82.791	81.925	86.173	-1.5462					212	83	5	0	0	0	0.048552	18	7245	7241;7245;7251;7257;7263;7269;7275;7281;7287;7293;7299;7305;7311;7317;7324;7332;7339;7345		119.56	45.04	1	5396400			1985	1180	1463	1465	2775;2776;2777;2778;2779;2780;2781;2782;2783;2784;2785;2786;2787;2788;2789;2790;2791;2792	2776					0.12032153662175915
APIAKVGVL	9	Unmodified	_APIAKVGVL_					0	0	0		nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1	nc|ENSG00000050405|Q9UHB6-2|LIMA1	nc|ENSG00000050405|Q9UHB6-2|LIMA1	MULTI-MSMS	OvCa9_classI_Rep3	3	434.287841796875	2	434.286746	866.558939	-0.63264	-0.00027475	-0.11263	-4.8914E-05	-0.74527	-0.00032366	434.286677686111	84.955	4.3034	82.734	81.922	86.225	-2.2204					224	85	5	0	0	0	0.032351	18	5008	4940;4944;4948;4954;4960;4966;4972;4978;4984;4990;4996;5002;5008;5014;5020;5027;5033;5041		133.47	53.53	1	8290000			1986	1180	1463	1465	2793;2794;2795;2796;2797;2798;2799;2800;2801;2802;2803;2804;2805;2806;2807;2808;2809;2810	2805					0.12032153662175915
APIAKVGVL	9	Unmodified	_APIAKVGVL_					0	0	0		nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1	nc|ENSG00000050405|Q9UHB6-2|LIMA1	nc|ENSG00000050405|Q9UHB6-2|LIMA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	434.28863525390625	2	434.286746	866.558939	1.9283	0.00083742	-1.2655	-0.00054957	0.66281	0.00028785	434.28614255533245	85.518	3.3765	82.872	82.361	85.737	-2.6463					177	67	4	0	0	0	0.048552	9	7206	7173;7183;7194;7206;7218;7230;7242;7256;7268		119.56	43.437	1	6069700			1987	1180	1463	1465	2811;2812;2813;2814;2815;2816;2817;2818;2819	2814					0.12032153662175915
APIKRADL	8	Unmodified	_APIKRADL_					0	0	0			REV__RPS6KA4|p.A310D|1|0.12|ENSG00000162302|chr11:64365323-64365323|C/A|missense_variant	REV__RPS6KA4|p.A310D|1|0.12|ENSG00000162302|chr11:64365323-64365323|C/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.7194519042969	2	442.271627	882.528701	-0.70724	-0.00031279	0.98175	0.0004342	0.2745	0.00012141	442.27188239821766	46.537	0.51843	43.464	43.189	43.707	-3.0724					15	9	2	0	0	0	0.028476	1	2457	2457		25.45	1.2474	1	21242	+		1988	29340	1464	1466	2820	2820					0.08273794996978268
APILKRAL	8	Unmodified	_APILKRAL_					0	0	0		nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENSG00000143093|ENST00000369795|STRIP1;ENST00000485775.5_1_1:110582506-110596531:+|nuORF;NRF1-FAM40B|1|fusion;nc|ENSG00000128578|Q9ULQ0-2|STRIP2;NRF1-FAM40B|2|fusion;ENSG00000128578|ENST00000249344|STRIP2	nc|ENSG00000143093|Q5VSL9-2|STRIP1;NRF1-FAM40B|1|fusion	NRF1-FAM40B|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	441.2991943359375	2	441.300188	880.585822	0.76676	0.00033837	-0.75246	-0.00033206	0.014297	6.3091E-06	441.2997389650203	59.875	1.5174	57.105	56.672	58.19	-2.7702					74	28	4	0	0	0	0.47599	4	4378	4374;4378;4384;4405		79.939	8.5613	1	516130			1989	3886;5010	1465	1467	2821;2822;2823;2824	2822					0.14075262273365752
APILKRAL	8	Unmodified	_APILKRAL_					0	0	0		nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENSG00000143093|ENST00000369795|STRIP1;ENST00000485775.5_1_1:110582506-110596531:+|nuORF;NRF1-FAM40B|1|fusion;nc|ENSG00000128578|Q9ULQ0-2|STRIP2;NRF1-FAM40B|2|fusion;ENSG00000128578|ENST00000249344|STRIP2	nc|ENSG00000143093|Q5VSL9-2|STRIP1;NRF1-FAM40B|1|fusion	NRF1-FAM40B|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	441.3008117675781	2	441.300188	880.585822	0.063001	2.7802E-05	0.032641	1.4404E-05	0.095642	4.2207E-05	441.3000829086682	60.638	1.6524	57.208	56.898	58.55	-3.43					78	33	4	0	0	0	0.47599	3	4118	4106;4118;4133		79.939	10.679	1	698770			1990	3886;5010	1465	1467	2825;2826;2827	2826					0.14075262273365752
APILMLLLA	9	Unmodified	_APILMLLLA_					0	0	0		tr|A0A553SRT6|A0A553SRT6_NIACIDUF3953domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01585PE=4SV=1	tr|A0A553SRT6|A0A553SRT6_NIACIDUF3953domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01585PE=4SV=1	tr|A0A553SRT6|A0A553SRT6_NIACIDUF3953domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01585PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	477.8079833984375	2	477.806457	953.598361	1.4028	0.00067027	2.616	0.0012499	4.0188	0.0019202	477.80751727561267	67.965	1.6502	65.078	64.789	66.439	-2.8873					73	32	4	0	0	0	0.68641	1	2937	2937		21.702	3.4402	1	189830			1991	34295	1466	1468	2828	2828					0.11970537621402855
APILRLRESL	10	Unmodified	_APILRLRESL_					0	0	0		ENST00000589292.1_1_18:57677720-57677828:-|nuORF	ENST00000589292.1_1_18:57677720-57677828:-|nuORF	ENST00000589292.1_1_18:57677720-57677828:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	585.3501586914062	2	584.364047	1166.71354	-0.77356	-0.00045204	0.062041	3.6255E-05	-0.71152	-0.00041579	584.3638674127856	74.894	0.72278	71.663	71.483	72.205	-3.2308					23	14	3	0	0	0	0.027174	1	5909	5909		20.947	15.727	1	53132			1992	14087	1467	1469	2829	2829					0.13685358076759258
APIPHRLFR	9	Unmodified	_APIPHRLFR_					0	0	0			REV__ENST00000252809.3_1_19:18499751-18499865:+|nuORF	REV__ENST00000252809.3_1_19:18499751-18499865:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.8125	2	553.832717	1105.65088	1.5182	0.0008408	-2.7262	-0.0015099	-1.2081	-0.00066907	553.8313941596789	85.578	0.68417	82.932	82.709	83.394	-2.6463					17	13	2	0	0	0	0.027462	1	7191	7191		24.203	4.206	1	20164	+		1993	23870	1468	1470	2830	2830					0.10228256799223345
APIQGNREEL	10	Unmodified	_APIQGNREEL_					0	0	0		SF3B2|p.V462Gfs*19|1|0.11|ENSG00000087365|chr11:66059579-66059579|T/-|frameshift_variant;ENSG00000087365|ENST00000322535|SF3B2;ENST00000531041.1_1_11:65819855-65820217:+|nuORF;ENST00000531589.5_1_11:65819891-65822828:+|nuORF;SF3B2|p.M239Wfs*41|1|0.16|ENSG00000087365|chr11:66057310-66057310|C/-|frameshift_variant	SF3B2|p.V462Gfs*19|1|0.11|ENSG00000087365|chr11:66059579-66059579|T/-|frameshift_variant	SF3B2|p.V462Gfs*19|1|0.11|ENSG00000087365|chr11:66059579-66059579|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.7975463867188	2	563.796195	1125.57784	1.1093	0.0006254	-1.6201	-0.00091339	-0.5108	-0.00028799	563.7954577014942	58.711	1.3447	55.319	55.051	56.396	-3.392					46	26	3	0	0	0	0.36605	1	3887	3887		72.879	8.672	1	437900			1994	1773	1469	1471	2831	2831					0.020070384952759923
APIQGNREEL	10	Unmodified	_APIQGNREEL_					0	0	0		SF3B2|p.V462Gfs*19|1|0.11|ENSG00000087365|chr11:66059579-66059579|T/-|frameshift_variant;ENSG00000087365|ENST00000322535|SF3B2;ENST00000531041.1_1_11:65819855-65820217:+|nuORF;ENST00000531589.5_1_11:65819891-65822828:+|nuORF;SF3B2|p.M239Wfs*41|1|0.16|ENSG00000087365|chr11:66057310-66057310|C/-|frameshift_variant	SF3B2|p.V462Gfs*19|1|0.11|ENSG00000087365|chr11:66059579-66059579|T/-|frameshift_variant	SF3B2|p.V462Gfs*19|1|0.11|ENSG00000087365|chr11:66059579-66059579|T/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	563.796195	1125.57784	-0.24178	-0.00013631	0.36531	0.00020596	0.12354	6.9651E-05	563.7962094949326	58.211	0.90222	55.419	55.072	55.975	-2.792	0.050094	0.001138	NaN	72.879	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67857			1995	1773	1469	1471							0.020070384952759923
APIQGSRNL	9	Unmodified	_APIQGSRNL_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.27044677734375	2	478.269616	954.524678	-0.22837	-0.00010922	0.26502	0.00012675	0.036653	1.753E-05	478.26978019495624	52.43	1.511	49.222	48.943	50.454	-3.208					69	29	4	0	0	0	0.12515	1	3129	3129		90.37	8.0648	1	1731400			1996	2095	1470	1472	2832	2832					0.045597055032772005
APIQPMQPIT	10	Unmodified	_APIQPMQPIT_					0	0	0			REV__nc|ENSG00000130940|Q86V15-2|CASZ1	REV__nc|ENSG00000130940|Q86V15-2|CASZ1	MULTI-MSMS	OvCa9_classI_Rep2	2	548.2959594726562	2	548.296985	1094.57942	-1.4493	-0.00079464	-1.4824	-0.00081281	-2.9317	-0.0016074	548.2961982412694	34.285	4.3001	31.575	31.119	35.419	-2.7097					197	86	6	0	0	0	0.62299	1	1491	1491		39.253	0.44669	1	2359300	+		1997	18983	1471	1473	2833	2833					0.03590956259677114
APIRTRREVQ	10	Unmodified	_APIRTRREVQ_					0	0	0			REV__ENST00000572330.5_1_17:4736842-4793277:+|nuORF	REV__ENST00000572330.5_1_17:4736842-4793277:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	409.24273681640625	3	409.242311	1224.7051	1.9243	0.00078752	-1.6139	-0.00066049	0.3104	0.00012703	409.24151722865713	36.236	1.595	33.387	32.99	34.585	-2.849					71	31	3	0	0	0	0.67987	1	1238	1238		32.751	2.1817	1	214070	+		1998	27752	1472	1474	2834	2834					0.10173804160149302
APISKLVN	8	Unmodified	_APISKLVN_					0	0	0			REV__nc|ENSG00000107331|Q9BZC7|ABCA2	REV__nc|ENSG00000107331|Q9BZC7|ABCA2	MULTI-MSMS	OvCa9_classI_Rep2	2	421.2593078613281	2	421.260728	840.506903	0.1688	7.111E-05	-3.1201	-0.0013144	-2.9513	-0.0012433	421.2592965587955	134.89	1.4682	134.66	133.66	135.13	-0.22696					55	29	3	0	0	0	0.7549	1	13359	13359		24.203	4.8428	1	378840	+		1999	17843	1473	1475	2835	2835					0.08026990248424681
APIVLVTR	8	Unmodified	_APIVLVTR_					0	0	0		OR1L8|p.S255Ifs*41|1|0.06|ENSG00000171496|chr9:122567714-122567715|-/AGGCCGAA|frameshift_variant;ENSG00000171496|ENST00000641027|OR1L8	OR1L8|p.S255Ifs*41|1|0.06|ENSG00000171496|chr9:122567714-122567715|-/AGGCCGAA|frameshift_variant	OR1L8|p.S255Ifs*41|1|0.06|ENSG00000171496|chr9:122567714-122567715|-/AGGCCGAA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	434.7695007324219	2	434.78437	867.554188	1.1138	0.00048428	-1.1265	-0.0004898	-0.012702	-5.5225E-06	434.78373066653387	42.419	0.59203	39.71	39.571	40.163	-2.7097					18	11	2	0	0	0	0.028476	1	2285	2285		38.806	12.01	1	46614			2000	7206	1474	1476	2836	2836					0.11511269519417056
APKAFIISF	9	Unmodified	_APKAFIISF_					0	0	0		ENSG00000127125|ENST00000372561|PPCS;nc|ENSG00000127125|Q9HAB8-2|PPCS	ENSG00000127125|ENST00000372561|PPCS	ENSG00000127125|ENST00000372561|PPCS	MULTI-MSMS	OvCa9_classI_Rep2	2	497.2913818359375	2	497.292028	992.569503	-1.6621	-0.00082655	1.5392	0.00076541	-0.12293	-6.1131E-05	497.29260557297687	119.26	0.98497	119.09	118.81	119.79	-0.17138					45	19	3	0	0	0	0.21231	2	11467	11467;11479		74.255	24.231	1	155600			2001	3820	1475	1477	2837;2838	2837					0.07292136316607412
APKAFIISF	9	Unmodified	_APKAFIISF_					0	0	0		ENSG00000127125|ENST00000372561|PPCS;nc|ENSG00000127125|Q9HAB8-2|PPCS	ENSG00000127125|ENST00000372561|PPCS	ENSG00000127125|ENST00000372561|PPCS	MULTI-MSMS	OvCa9_classI_Rep3	3	497.29156494140625	2	497.292028	992.569503	0.88831	0.00044175	-1.1699	-0.00058179	-0.28161	-0.00014004	497.2912758594464	120.22	1.3468	119.19	118.82	120.17	-1.0271					53	26	3	0	0	0	0.31747	2	9155	9149;9155		60.972	15	1	209280			2002	3820	1475	1477	2839;2840	2840					0.07292136316607412
APKPQGPAF	9	Unmodified	_APKPQGPAF_					0	0	0		nc|ENSG00000115325|Q99704-3|DOK1;ENSG00000115325|ENST00000233668|DOK1	nc|ENSG00000115325|Q99704-3|DOK1	nc|ENSG00000115325|Q99704-3|DOK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.7518615722656	2	456.750527	911.486502	0.40564	0.00018528	-0.083265	-3.8031E-05	0.32237	0.00014724	456.7502380222749	60.756	1.3739	57.326	56.898	58.272	-3.43					62	27	3	0	0	0	0.071436	1	4138	4138		106.42	23.128	1	493160			2003	3088	1476	1478	2841	2841					0.027218195886121066
APKPQGPAF	9	Unmodified	_APKPQGPAF_					0	0	0		nc|ENSG00000115325|Q99704-3|DOK1;ENSG00000115325|ENST00000233668|DOK1	nc|ENSG00000115325|Q99704-3|DOK1	nc|ENSG00000115325|Q99704-3|DOK1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	456.750527	911.486502	0.29695	0.00013563	1.2878	0.0005882	1.5847	0.00072383	456.75031256358955	60.214	1.1537	57.444	56.983	58.136	-2.7702	0.058522	0.0011016	NaN	106.42	57	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84530			2004	3088	1476	1478							0.027218195886121066
APKPSSPRLS	10	Unmodified	_APKPSSPRLS_					0	0	0			REV__nc|ENSG00000198758|Q8TE67-2|EPS8L3	REV__nc|ENSG00000198758|Q8TE67-2|EPS8L3	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.2999267578125	2	520.298373	1038.58219	-1.4127	-0.00073503	0.72527	0.00037736	-0.68743	-0.00035767	520.2985640183857	44.624	1.1277	41.585	41.258	42.386	-3.0385					43	21	4	0	0	0	0.61634	1	2229	2229		40.058	1.252	1	417950	+		2005	29090	1477	1479	2842	2842					0.06444547708861137
APKPSSPRLS	10	Unmodified	_APKPSSPRLS_					0	0	0			REV__nc|ENSG00000198758|Q8TE67-2|EPS8L3	REV__nc|ENSG00000198758|Q8TE67-2|EPS8L3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	520.298373	1038.58219	0.53261	0.00027711	-1.1681	-0.00060778	-0.63554	-0.00033067	520.2974540507324	44.292	0.99519	41.582	41.402	42.398	-2.7097	-0.0014148	-0.0013073	NaN	40.058	32	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76285	+		2006	29090	1477	1479							0.06444547708861137
APKPSSPRLS	10	Unmodified	_APKPSSPRLS_					0	0	0			REV__nc|ENSG00000198758|Q8TE67-2|EPS8L3	REV__nc|ENSG00000198758|Q8TE67-2|EPS8L3	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	520.298373	1038.58219	-1.4127	-0.00073503	0.72527	0.00037736	-0.68743	-0.00035767	520.2985640183857	44.624	1.1277	41.585	41.258	42.386	-3.0385	0.0014148	0.00066302	NaN	40.058	43	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	417950	+		2007	29090	1477	1479							0.06444547708861137
APKPYHKF	8	Unmodified	_APKPYHKF_					0	0	0		nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1	nc|ENSG00000071054|O95819-4|MAP4K4;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;nc|ENSG00000141503|Q8N4C8-3|MINK1	nc|ENSG00000071054|O95819-4|MAP4K4	MULTI-MSMS	OvCa99_classI_Rep5	1	494.27532958984375	2	494.27417	986.533787	-0.58647	-0.00028988	0.52146	0.00025774	-0.06501	-3.2133E-05	494.2742562390085	55.578	1.1549	55.578	55.023	56.178	0					59	27	3	0	0	0	0.56195	1	4556	4556		71.296	16.401	1	4138600			2008	1444;15064;5729	1478	1480	2843	2843					0.0399809885960849
APKRFQVKKGL	11	Unmodified	_APKRFQVKKGL_					0	0	0			REV__ENSG00000105656|ENST00000262809|ELL	REV__ENSG00000105656|ENST00000262809|ELL	MULTI-MSMS	OvCa9_classI_Rep3	3	636.3980102539062	2	636.400964	1270.78738	-6.5368	-0.00416	2.4083	0.0015327	-4.1284	-0.0026273	636.4023674987772	159.22	1.0639	157.95	157.66	158.73	-1.267					49	20	4	0	0	0	0.72505	1	13793	13793		14.865	1.4108	1	88247	+		2009	17743	1479	1481	2844	2844					0.1628132623907277
APKRPPSAF	9	Unmodified	_APKRPPSAF_					0	0	0		ENSG00000189403|ENST00000341423|HMGB1;ENSG00000164104|ENST00000296503|HMGB2;nc|ENSG00000124097|B2RPK0|HMGB1P1;ENST00000402555.2_1_6:53100721-53100889:-|nuORF	ENSG00000189403|ENST00000341423|HMGB1;ENST00000402555.2_1_6:53100721-53100889:-|nuORF	ENSG00000189403|ENST00000341423|HMGB1	MULTI-MSMS	OvCa9_classI_Rep2	2	485.7771911621094	2	485.777077	969.5396	-0.44927	-0.00021825	-0.24049	-0.00011683	-0.68976	-0.00033507	485.7769188382836	47.173	2.0359	44.464	43.943	45.979	-2.7097					108	40	4	0	0	0	0.059253	13	2859	2836;2841;2847;2853;2859;2865;2872;2878;2884;2891;2897;2904;2917		113.41	35.323	1	1379700			2010	8555;11433	1480	1482	2845;2846;2847;2848;2849;2850;2851;2852;2853;2854;2855;2856;2857	2849					0.053611973712691
APKRPPSAF	9	Unmodified	_APKRPPSAF_					0	0	0		ENSG00000189403|ENST00000341423|HMGB1;ENSG00000164104|ENST00000296503|HMGB2;nc|ENSG00000124097|B2RPK0|HMGB1P1;ENST00000402555.2_1_6:53100721-53100889:-|nuORF	ENSG00000189403|ENST00000341423|HMGB1;ENST00000402555.2_1_6:53100721-53100889:-|nuORF	ENSG00000189403|ENST00000341423|HMGB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.7785339355469	2	485.777077	969.5396	0.11284	5.4817E-05	-1.162	-0.00056445	-1.0491	-0.00050963	485.77651440473693	47.516	2.1496	44.408	43.927	46.076	-3.1077					127	41	4	0	0	0	0.035142	7	2540	2540;2551;2563;2575;2587;2600;2612		131.03	57.057	1	5266400			2011	8555;11433	1480	1482	2858;2859;2860;2861;2862;2863;2864	2858					0.053611973712691
APKSSKTEL	9	Unmodified	_APKSSKTEL_					0	0	0		ENST00000503561.7_1_5:50057675-50130728:+|nuORF;nc|ENSG00000151883|Q8N3A8-2|PARP8;ENSG00000151883|ENST00000281631|PARP8	ENST00000503561.7_1_5:50057675-50130728:+|nuORF	ENST00000503561.7_1_5:50057675-50130728:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	480.7720947265625	2	480.771657	959.528761	-0.70034	-0.0003367	0.52903	0.00025434	-0.17131	-8.236E-05	480.7716145182703	32.494	0.49475	29.784	29.58	30.075	-2.7097					23	9	3	0	0	0	0.53483	2	1086	1080;1086		39.253	6.4404	1	79381			2012	5591	1481	1483	2865;2866	2866					0.04737750206322744
APKSSSGFSL	10	Unmodified	_APKSSSGFSL_					0	0	0		ENST00000565420.5_1_16:18800314-18800410:-|nuORF	ENST00000565420.5_1_16:18800314-18800410:-|nuORF	ENST00000565420.5_1_16:18800314-18800410:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.7570495605469	2	490.756007	979.497461	-0.59763	-0.00029329	0.62238	0.00030543	0.024749	1.2146E-05	490.75609348856585	71.239	1.4114	67.783	67.44	68.851	-3.4563					83	28	5	0	0	0	0.17251	2	5417	5417;5425		98.582	13.666	1	887970			2013	13819	1482	1484	2867;2868	2867					0.006891771722393969
APKSSSGFSL	10	Unmodified	_APKSSSGFSL_					0	0	0		ENST00000565420.5_1_16:18800314-18800410:-|nuORF	ENST00000565420.5_1_16:18800314-18800410:-|nuORF	ENST00000565420.5_1_16:18800314-18800410:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	490.756007	979.497461	0.57018	0.00027982	-0.60646	-0.00029762	-0.036286	-1.7808E-05	490.75552236933504	70.296	1.4219	67.726	67.214	68.635	-2.5707	-0.070295	-0.00048037	NaN	98.582	67	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	254790			2014	13819	1482	1484							0.006891771722393969
APKSSSGFSL	10	Unmodified	_APKSSSGFSL_					0	0	0		ENST00000565420.5_1_16:18800314-18800410:-|nuORF	ENST00000565420.5_1_16:18800314-18800410:-|nuORF	ENST00000565420.5_1_16:18800314-18800410:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	490.756007	979.497461	0.13125	6.4412E-05	0.99182	0.00048674	1.1231	0.00055115	490.7570119350464	70.599	0.36107	67.879	67.699	68.06	-2.7196	0.083194	0.0010884	NaN	98.582	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9775.5			2015	13819	1482	1484							0.006891771722393969
APKTDKAK	8	Unmodified	_APKTDKAK_					0	0	0		tr|A0A553SSI4|A0A553SSI4_NIACIRibonucleoside-diphosphatereductaseOS=NialliacirculansOX=1397GN=nrdEPE=3SV=1	tr|A0A553SSI4|A0A553SSI4_NIACIRibonucleoside-diphosphatereductaseOS=NialliacirculansOX=1397GN=nrdEPE=3SV=1	tr|A0A553SSI4|A0A553SSI4_NIACIRibonucleoside-diphosphatereductaseOS=NialliacirculansOX=1397GN=nrdEPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	429.7561950683594	2	429.75581	857.497067	-0.065104	-2.7979E-05	0.19038	8.1818E-05	0.12528	5.3839E-05	429.75572507805686	31.13	0.63941	28.42	28.15	28.789	-2.7097					31	12	3	0	0	0	0.75723	1	930	930		23.042	2.0956	1	162230			2016	34378	1483	1485	2869	2869					0.06261802243034253
APLAPLPIPSN	11	Unmodified	_APLAPLPIPSN_					0	0	0		nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	MULTI-MSMS	OvCa9_classI_Rep2	2	545.317138671875	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.71789	1	14217	14217		23.523	0.48021	1	202430			2017	5408	1484	1486	2870	2870					0.08222889028479585
APLAPRSMVV	10	Unmodified	_APLAPRSMVV_					0	0	0		ENST00000341901.4_1_16:28304499-28304541:+|nuORF	ENST00000341901.4_1_16:28304499-28304541:+|nuORF	ENST00000341901.4_1_16:28304499-28304541:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	520.797119140625	2	520.799694	1039.58484	-2.3393	-0.0012183	-1.3897	-0.00072374	-3.7289	-0.001942	520.7988321454784	36.331	1.3811	33.621	33.4	34.781	-2.7097					74	27	4	0	0	0	0.72319	1	1579	1579		27.882	1.1893	1	644080			2018	10573	1485	1487	2871	2871					0.06662679842156649
APLASVLVRLE	11	Unmodified	_APLASVLVRLE_					0	0	0			REV__ENST00000249373.7_1_7:128852402-128852711:+|nuORF	REV__ENST00000249373.7_1_7:128852402-128852711:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3565063476562	2	584.358431	1166.70231	-2.312	-0.0013511	-1.149	-0.00067141	-3.461	-0.0020225	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.72485	1	14706	14706		17.468	0.99486	1	180810	+		2019	23853	1486	1488	2872	2872					0.12562535982624468
APLEENVDI	9	Unmodified	_APLEENVDI_					0	0	0			REV__ENSG00000178691|ENST00000322652|SUZ12	REV__ENSG00000178691|ENST00000322652|SUZ12	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.30511474609375	2	500.253297	998.492041	0.3313	0.00016574	-3.7983	-0.0019001	-3.467	-0.0017344	500.2513770272771	110.91	0.47334	109.31	109.07	109.54	-1.6011					12	8	2	0	0	0	0.027462	1	10197	10197		39.253	17.293	1	9742.7	+		2020	22071	1487	1489	2873	2873					-0.007265464102374608
APLFMSNDL	9	Unmodified	_APLFMSNDL_					0	0	0		ENST00000466414.1_1_X:100652799-100653600:-|nuORF;ENSG00000102393|ENST00000218516|GLA	ENST00000466414.1_1_X:100652799-100653600:-|nuORF	ENST00000466414.1_1_X:100652799-100653600:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	503.7561340332031	2	504.24696	1006.47937	-1.6644	-0.00083929	-2.266	-0.0011426	-3.9304	-0.0019819	504.2456451678876	52.337	0.79023	49.524	49.196	49.986	-2.8129					41	15	3	0	0	0	0.027462	1	3519	3519		30.504	2.2494	1	98397			2021	2238	1488	1490	2874	2874					-0.02361281074126964
APLGARRSP	9	Unmodified	_APLGARRSP_					0	0	0			REV__ENST00000457894.4_1_X:38660720-38664200:+|nuORF	REV__ENST00000457894.4_1_X:38660720-38664200:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.7701721191406	2	462.772326	923.530098	0.22356	0.00010346	-0.98816	-0.00045729	-0.7646	-0.00035384	462.7719192791278	37.709	0.99509	34.816	34.442	35.437	-2.8925					62	19	4	0	0	0	0.42676	1	1466	1466		49.442	0	1	3768700	+		2022	26051	1489	1491	2875	2875					0.0652742908575874
APLKDLLLA	9	Unmodified	_APLKDLLLA_					0	0	0			REV__ENSG00000066735|ENST00000423312|KIF26A	REV__ENSG00000066735|ENST00000423312|KIF26A	MULTI-SECPEP	OvCa9_classI_Rep3	3	478.2849426269531	2	477.305136	952.595718	0.099817	4.7643E-05	0.82372	0.00039317	0.92354	0.00044081	477.30492127404483	90.079	1.279	87.999	87.644	88.923	-2.0805					48	24	4	0	0	0	0.027462	1	5537	5537		20.482	0	1	132640	+		2023	16821	1490	1492	2876	2876					0.11752405488084605
APLKILHLIL	10	Unmodified	_APLKILHLIL_					0	0	0			REV__ENSG00000110756|ENST00000349215|HPS5	REV__ENSG00000110756|ENST00000349215|HPS5	MULTI-MSMS	OvCa99_classI_Rep5	1	565.8848266601562	2	565.886627	1129.7587	1.462	0.0008273	-0.14551	-8.234E-05	1.3164	0.00074496	565.8864256451917	123.23	1.1972	123.23	122.81	124.01	0					39	25	2	0	0	0	0.81289	1	14182	14182		17.365	4.4058	1	94428	+		2024	18001	1491	1493	2877	2877					0.19901208609940113
APLLKKQTL	9	Unmodified	_APLLKKQTL_					0	0	0		ENSG00000134899|ENST00000652225|ERCC5;ERCC5|p.G78V|1|0.64|ENSG00000134899|chr13:102852262-102852262|G/T|missense_variant;ENST00000375958.3_1_13:103498616-103506268:+|nuORF;nc|ENSG00000134899|P28715-3|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	MULTI-MSMS	OvCa9_classI_Rep2	2	506.3315124511719	2	506.331685	1010.64882	-1.1184	-0.00056627	0.73739	0.00037336	-0.38099	-0.00019291	506.33196533037597	56.591	1.6359	53.787	53.275	54.911	-2.804					85	32	4	0	0	0	0.18193	6	3996	3991;3996;4003;4009;4015;4021		79.451	13.648	1	345780			2025	4343	1492	1494	2878;2879;2880;2881;2882;2883	2879					0.14391783270752967
APLLKKQTL	9	Unmodified	_APLLKKQTL_					0	0	0		ENSG00000134899|ENST00000652225|ERCC5;ERCC5|p.G78V|1|0.64|ENSG00000134899|chr13:102852262-102852262|G/T|missense_variant;ENST00000375958.3_1_13:103498616-103506268:+|nuORF;nc|ENSG00000134899|P28715-3|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.3330993652344	2	506.331685	1010.64882	-0.2735	-0.00013848	-0.27348	-0.00013847	-0.54697	-0.00027695	506.3314962068144	57.326	1.5691	53.981	53.628	55.197	-3.3449					77	30	4	0	0	0	0.068524	3	3712	3712;3722;3737		108.09	28.636	1	855100			2026	4343	1492	1494	2884;2885;2886	2884					0.14391783270752967
APLLKTLDHV	10	Unmodified	_APLLKTLDHV_					0	0	0		TBCD|p.V1041A|1|0.1|ENSG00000141556|chr17:82932666-82932666|T/C|missense_variant	TBCD|p.V1041A|1|0.1|ENSG00000141556|chr17:82932666-82932666|T/C|missense_variant	TBCD|p.V1041A|1|0.1|ENSG00000141556|chr17:82932666-82932666|T/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	553.830322265625	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.78463	1	14198	14198		20.947	1.8434	1	245610			2027	32947	1493	1495	2887	2887					0.10094577919790026
APLLKTLDHV	10	Unmodified	_APLLKTLDHV_					0	0	0		TBCD|p.V1041A|1|0.1|ENSG00000141556|chr17:82932666-82932666|T/C|missense_variant	TBCD|p.V1041A|1|0.1|ENSG00000141556|chr17:82932666-82932666|T/C|missense_variant	TBCD|p.V1041A|1|0.1|ENSG00000141556|chr17:82932666-82932666|T/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8308715820312	2	553.832049	1105.64954	0.13277	7.3535E-05	-3.4573	-0.0019148	-3.3245	-0.0018412	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.79917	1	13859	13859		19.104	2.6304	1	400120			2028	32947	1493	1495	2888	2888					0.10094577919790026
APLLRGLVLN	10	Unmodified	_APLLRGLVLN_					0	0	0			REV__ENSG00000178814|ENST00000618853|OPLAH	REV__ENSG00000178814|ENST00000618853|OPLAH	MULTI-MSMS	OvCa99_classI_Rep5	1	533.3413696289062	2	533.342584	1064.67061	0.49911	0.0002662	-4.4816	-0.0023902	-3.9824	-0.002124	533.3400320401221	161.43	1.4191	161.43	160.91	162.33	0					78	27	5	0	0	0	0.71192	1	18924	18924		29.15	3.6994	1	777360	+		2029	22082	1494	1496	2889	2889					0.1408658801931324
APLLRKVYL	9	Unmodified	_APLLRKVYL_					0	0	0		ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123;ENST00000486102.5_1_3:49728598-49742525:+|nuORF	ENSG00000164068|ENST00000327697|RNF123	ENSG00000164068|ENST00000327697|RNF123	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.8494262695312	2	536.847502	1071.68045	0.43427	0.00023314	-0.528	-0.00028346	-0.093731	-5.0319E-05	536.8470824983193	85.012	1.2213	82.365	82.072	83.293	-2.6463					60	24	4	0	0	0	0.11171	1	7145	7145		94.006	62.052	1	269760			2030	6400	1495	1497	2890	2890					0.14747776024682935
APLLRKVYL	9	Unmodified	_APLLRKVYL_					0	0	0		ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123;ENST00000486102.5_1_3:49728598-49742525:+|nuORF	ENSG00000164068|ENST00000327697|RNF123	ENSG00000164068|ENST00000327697|RNF123	MULTI-MATCH	OvCa9_classI_Rep3	3		2	536.847502	1071.68045	0.066738	3.5828E-05	-0.90323	-0.0004849	-0.83649	-0.00044907	536.8469085554526	84.692	1.3837	82.431	82.162	83.545	-2.261	0.032809	-8.2466E-05	NaN	94.006	75	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	428180			2031	6400	1495	1497							0.14747776024682935
APLLRVAL	8	Unmodified	_APLLRVAL_					0	0	0		nc|ENSG00000153214|Q96K49-2|TMEM87B;ENSG00000153214|ENST00000283206|TMEM87B	REV__nc|ENSG00000134109|Q92611-2|EDEM1;nc|ENSG00000153214|Q96K49-2|TMEM87B	nc|ENSG00000153214|Q96K49-2|TMEM87B	MULTI-MSMS	OvCa9_classI_Rep4_	4	426.7877197265625	2	426.786913	851.559273	0.012448	5.3125E-06	0.18204	7.7692E-05	0.19449	8.3004E-05	426.7868933225178	105.89	1.0671	103.87	103.6	104.66	-2.0161					44	20	3	0	0	0	0.67745	1	9624	9624		47.916	8.8941	1	167890			2032	19174;5668	1496	1498	2891	2891					0.12755573382037255
APLLRVAL	8	Unmodified	_APLLRVAL_					0	0	0		nc|ENSG00000153214|Q96K49-2|TMEM87B;ENSG00000153214|ENST00000283206|TMEM87B	REV__nc|ENSG00000134109|Q92611-2|EDEM1;nc|ENSG00000153214|Q96K49-2|TMEM87B	nc|ENSG00000153214|Q96K49-2|TMEM87B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	426.786913	851.559273	-0.79001	-0.00033717	0.85367	0.00036434	0.06366	2.7169E-05	426.7871345929615	104.29	0.98873	103.71	103.47	104.46	-0.57639	-0.087263	0.00062122	NaN	47.916	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154330			2033	19174;5668	1496	1498							0.12755573382037255
APLLRVAL	8	Unmodified	_APLLRVAL_					0	0	0		nc|ENSG00000153214|Q96K49-2|TMEM87B;ENSG00000153214|ENST00000283206|TMEM87B	REV__nc|ENSG00000134109|Q92611-2|EDEM1;nc|ENSG00000153214|Q96K49-2|TMEM87B	nc|ENSG00000153214|Q96K49-2|TMEM87B	MULTI-MATCH	OvCa9_classI_Rep3	3		2	426.786913	851.559273	0.97331	0.00041539	-0.96153	-0.00041037	0.01178	5.0275E-06	426.78639231871125	105.16	0.83206	103.81	103.52	104.35	-1.3482	0.013418	-0.00092819	NaN	47.916	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193390			2034	19174;5668	1496	1498							0.12755573382037255
APLLRWVL	8	Unmodified	_APLLRWVL_					0	0	0		ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	MULTI-MSMS	OvCa9_classI_Rep2	2	484.30767822265625	2	484.308013	966.601472	0.93371	0.0004522	-0.79171	-0.00038343	0.142	6.877E-05	484.3074830204417	129.68	1.0861	129.46	129.12	130.21	-0.22696					46	21	4	0	0	0	0.61758	4	12743	12730;12737;12743;12755		60.294	25.093	1	157450			2035	2041	1497	1499	2892;2893;2894;2895	2894					0.11683548790404075
APLLRWVL	8	Unmodified	_APLLRWVL_					0	0	0		ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.3081970214844	2	484.308013	966.601472	3.7964	0.0018386	-3.676	-0.0017803	0.12041	5.8313E-05	484.3060586662709	131.36	1.0726	129.88	129.64	130.72	-1.4779					54	21	4	0	0	0	0.71369	2	12627	12627;12664		40.573	10.069	1	95427			2036	2041	1497	1499	2896;2897	2896					0.11683548790404075
APLMLSPNL	9	Unmodified	_APLMLSPNL_					0	0	0			REV__nc|ENSG00000196663|O15040-2|TECPR2	REV__nc|ENSG00000196663|O15040-2|TECPR2	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.2720947265625	2	478.267696	954.520839	-0.22837	-0.00010922	4.2793	0.0020467	4.051	0.0019374	478.26978019495624	52.43	1.511	49.222	48.943	50.454	-3.208					69	29	4	0	0	0	0.19758	1	3140	3140		76.774	1.7308	1	1731400	+		2037	22853	1498	1500	2898	2898					0.04175899685196782
APLNRKGL	8	Unmodified	_APLNRKGL_					0	0	0		ENSG00000113916|ENST00000406870|BCL6;nc|ENSG00000113916|P41182-2|BCL6	ENSG00000113916|ENST00000406870|BCL6	ENSG00000113916|ENST00000406870|BCL6	MULTI-MSMS	OvCa9_classI_Rep2	2	434.7716064453125	2	434.771794	867.529036	1.2559	0.00054602	-1.3563	-0.00058966	-0.10039	-4.3645E-05	434.7711959531507	41.911	2.4713	39.201	38.881	41.353	-2.7097					118	49	4	0	0	0	0.71369	1	2260	2260		40.573	1.7665	1	2230100			2038	3001	1499	1501	2899	2899					0.08997214716850976
APLPAAPATAP	11	Unmodified	_APLPAAPATAP_					0	0	0		IQSEC3|p.T916Sfs*21|1|0.05|ENSG00000120645|chr12:165470-165471|-/GTGTGTG|frameshift_variant;IQSEC3|p.Y917Hfs*38|1|0.04|ENSG00000120645|chr12:165471-165472|-/ACATATATGTATATCTGTACCTGTAT|frameshift_variant;ENSG00000120645|ENST00000538872|IQSEC3	IQSEC3|p.T916Sfs*21|1|0.05|ENSG00000120645|chr12:165470-165471|-/GTGTGTG|frameshift_variant	IQSEC3|p.T916Sfs*21|1|0.05|ENSG00000120645|chr12:165470-165471|-/GTGTGTG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.27374267578125	2	488.776742	975.538931	-0.5887	-0.00028774	3.3874	0.0016557	2.7987	0.0013679	488.7782898890883	61.395	1.1075	61.395	60.518	61.626	0					34	25	2	0	0	0	0.025329	1	5430	5430		35.618	0	1	1728900			2039	3437	1500	1502	2900	2900					0.050183579315557836
APLPALPVPL	10	Unmodified	_APLPALPVPL_					0	0	0		nc|ENSG00000126562|Q96J92-2|WNK4;nc|ENSG00000126562|Q96J92-3|WNK4;ENSG00000126562|ENST00000246914|WNK4	nc|ENSG00000126562|Q96J92-2|WNK4	nc|ENSG00000126562|Q96J92-2|WNK4	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2703552246094	2	494.315503	986.616454	1.6323	0.00080688	0.46869	0.00023168	2.101	0.0010386	494.31563510682804	133.54	0.653	133.54	133.31	133.96	0					32	13	3	0	0	0	0.026839	1	15508	15508		35.201	17.836	1	365090			2040	3789	1501	1503	2901	2901					0.12260995867734437
APLPPLQPHRL	11	Unmodified	_APLPPLQPHRL_					0	0	0			REV__nc|ENSG00000198933|A7MCY6-2|TBKBP1	REV__nc|ENSG00000198933|A7MCY6-2|TBKBP1	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8690185546875	2	619.87204	1237.72953	-3.1788	-0.0019704	-0.96478	-0.00059804	-4.1435	-0.0025685	619.8711859647292	147.21	3.9856	146.98	144.83	148.82	-0.22696					207	79	4	0	0	0	0.70865	1	14873	14873		26.693	1.1189	1	163200	+		2041	29091	1502	1504	2902	2902					0.1201706431365892
APLPRQACGL	10	Unmodified	_APLPRQACGL_					0	0	0			REV__ENST00000552758.1_1_12:108910808-108911051:+|nuORF	REV__ENST00000552758.1_1_12:108910808-108911051:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.62158203125	2	513.281669	1024.54878	1.2624	0.00064797	1.5097	0.00077492	2.7721	0.0014229	513.2819178569414	65.569	0.59916	62.873	62.67	63.269	-2.6958					17	11	2	0	0	0	0.026697	1	5034	5034		45.952	8.7928	1	20216	+		2042	24854	1503	1505	2903	2903					0.037492226653057514
APLQHRHVL	9	Unmodified	_APLQHRHVL_					0	0	0		nc|ENSG00000167470|Q504T8|MIDN;ENSG00000167470|ENST00000682408|MIDN	nc|ENSG00000167470|Q504T8|MIDN	nc|ENSG00000167470|Q504T8|MIDN	MULTI-MSMS	OvCa9_classI_Rep2	2	535.8142700195312	2	535.814525	1069.6145	-0.76164	-0.0004081	1.2462	0.00066774	0.48458	0.00025964	535.8146268259228	44.821	1.2946	42.112	41.653	42.947	-2.7097					61	25	4	0	0	0	0.34496	3	2556	2556;2567;2573		57.811	11.354	1	428190			2043	6791	1504	1506	2904;2905;2906	2904					0.08247379902513785
APLRHKPIQ	9	Unmodified	_APLRHKPIQ_					0	0	0			REV__ENST00000398637.9_1_12:46578652-46578736:-|nuORF	REV__ENST00000398637.9_1_12:46578652-46578736:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.3015747070312	2	530.324725	1058.6349	-0.9212	-0.00048853	4.1528	0.0022023	3.2316	0.0017138	530.3265700471461	47.332	0.20531	44.259	44.117	44.322	-3.0724					5	3	2	0	0	0	0.027426	1	2527	2527		73.975	22.639	1	10048	+		2044	25378	1505	1507	2907	2907					0.10792550562314318
APLRIQKL	8	Unmodified	_APLRIQKL_					0	0	0			REV__nc|ENSG00000168538|Q7Z392-3|TRAPPC11	REV__nc|ENSG00000168538|Q7Z392-3|TRAPPC11	MULTI-SECPEP	OvCa9_classI_Rep2	2	469.7502136230469	2	469.810919	937.607286	-1.2573	-0.00059068	1.0747	0.00050491	-0.18257	-8.5773E-05	469.8111727708851	67.938	0.68852	65.277	65.041	65.729	-2.661					20	13	2	0	0	0	0.028476	1	5362	5362		19.36	0	1	45132	+		2045	28993	1506	1508	2908	2908					0.13598647302069367
APLSAVDLKL	10	Unmodified	_APLSAVDLKL_					0	0	0		nc|ENSG00000159899|P20594-2|NPR2;ENSG00000159899|ENST00000342694|NPR2	nc|ENSG00000159899|P20594-2|NPR2	nc|ENSG00000159899|P20594-2|NPR2	MULTI-MSMS	OvCa9_classI_Rep3	3	513.813720703125	2	513.813325	1025.6121	-0.52087	-0.00026763	0.12081	6.2073E-05	-0.40006	-0.00020556	513.8133179520387	96.39	1.8725	94.561	93.78	95.652	-1.8286					114	36	4	0	0	0	0.10076	1	6343	6343		113.41	11.811	1	1310500			2046	6032	1507	1509	2909	2909					0.10031486654179389
APLSPSLLIRT	11	Unmodified	_APLSPSLLIRT_					0	0	0		ENSG00000087074|ENST00000200453|PPP1R15A	ENSG00000087074|ENST00000200453|PPP1R15A	ENSG00000087074|ENST00000200453|PPP1R15A	MULTI-MSMS	OvCa9_classI_Rep3	3	584.3560791015625	2	584.358431	1166.70231	-4.6254	-0.0027029	1.1397	0.00066599	-3.4857	-0.0020369	584.3589865391973	145.25	4.5766	144.28	142.9	147.48	-0.97299					233	91	4	0	0	0	0.71191	1	12325	12325		25.574	6.4705	1	156220			2047	1760	1508	1510	2910	2910					0.1256253598260173
APLSSNVQNWR	11	Unmodified	_APLSSNVQNWR_					0	0	0		ENST00000546295.1_2:218664879-218665220:-|nuORF	ENST00000546295.1_2:218664879-218665220:-|nuORF	ENST00000546295.1_2:218664879-218665220:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	636.3290405273438	2	636.328193	1270.64183	-0.38295	-0.00024368	0.37669	0.0002397	-0.0062585	-3.9825E-06	636.3283806206185	88.113	1.1978	85.982	85.648	86.846	-2.1309					67	23	5	0	0	0	0.67529	1	5342	5342		37.812	0	1	538280			2048	13531	1509	1511	2911	2911					0.0173381865220108
APLTRLLL	8	Unmodified	_APLTRLLL_					0	0	0		ENST00000485682.6_2_11:2422258-2422552:+|nuORF	ENST00000485682.6_2_11:2422258-2422552:+|nuORF	ENST00000485682.6_2_11:2422258-2422552:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	448.7997741699219	2	448.80002	895.585488	1.1656	0.00052313	-1.2994	-0.00058316	-0.13374	-6.0023E-05	448.7993403222566	118.17	1.7331	118.03	117.69	119.42	-0.14755					87	34	4	0	0	0	0.57878	4	11325	11325;11343;11355;11363		68.485	13.72	1	562320			2049	12613	1510	1512	2912;2913;2914;2915	2912					0.1335184255351578
APLTRLLL	8	Unmodified	_APLTRLLL_					0	0	0		ENST00000485682.6_2_11:2422258-2422552:+|nuORF	ENST00000485682.6_2_11:2422258-2422552:+|nuORF	ENST00000485682.6_2_11:2422258-2422552:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	448.7994384765625	2	448.80002	895.585488	0.73618	0.0003304	-0.70585	-0.00031678	0.030333	1.3614E-05	448.7995819385941	119.43	1.6759	118.4	117.98	119.66	-1.0271					86	33	4	0	0	0	0.57878	2	9058	9058;9083		68.485	10.673	1	762460			2050	12613	1510	1512	2916;2917	2916					0.1335184255351578
APLTRLLL	8	Unmodified	_APLTRLLL_					0	0	0		ENST00000485682.6_2_11:2422258-2422552:+|nuORF	ENST00000485682.6_2_11:2422258-2422552:+|nuORF	ENST00000485682.6_2_11:2422258-2422552:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	448.79949951171875	2	448.80002	895.585488	0.78821	0.00035375	-0.96985	-0.00043527	-0.18164	-8.152E-05	448.7994771029251	111.89	1.1919	110.38	110.05	111.24	-1.5111					46	22	3	0	0	0	0.67745	1	10325	10325		47.916	3.3845	1	118910			2051	12613	1510	1512	2918	2918					0.1335184255351578
APLTRLLL	8	Unmodified	_APLTRLLL_					0	0	0		ENST00000485682.6_2_11:2422258-2422552:+|nuORF	ENST00000485682.6_2_11:2422258-2422552:+|nuORF	ENST00000485682.6_2_11:2422258-2422552:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	448.80002	895.585488	2.6622	0.0011948	-2.6211	-0.0011763	0.041118	1.8454E-05	448.79868989839684	110.3	0.84016	110.13	109.86	110.7	-0.17237	-0.12555	-0.00084997	NaN	47.916	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125110			2052	12613	1510	1512							0.1335184255351578
APLTRLLL	8	Unmodified	_APLTRLLL_					0	0	0		ENST00000485682.6_2_11:2422258-2422552:+|nuORF	ENST00000485682.6_2_11:2422258-2422552:+|nuORF	ENST00000485682.6_2_11:2422258-2422552:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	448.80002	895.585488	1.4345	0.00064382	-1.5632	-0.00070158	-0.12871	-5.7767E-05	448.7991348409434	111.36	1.285	110.26	109.95	111.24	-1.1038	0.0013465	9.9539E-05	NaN	47.916	53	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98646			2053	12613	1510	1512							0.1335184255351578
APLYTLKGR	9	Unmodified	_APLYTLKGR_					0	0	0			REV__ENST00000477538.1_1_3:10184451-10184685:+|nuORF	REV__ENST00000477538.1_1_3:10184451-10184685:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	509.80340576171875	2	509.805834	1017.59712	-0.41042	-0.00020923	-3.6368	-0.0018541	-4.0473	-0.0020633	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.68424	1	13435	13435		21.96	2.5999	1	150140	+		2054	26390	1511	1513	2919	2919					0.08902039576855714
APNAIRID	8	Unmodified	_APNAIRID_					0	0	0			REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|338|2|anti-sense	REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|338|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	434.77166748046875	2	435.245609	868.476666	0.81621	0.00035525	-0.4439	-0.0001932	0.37231	0.00016205	435.2452065723208	41.027	1.3794	38.317	38.044	39.423	-2.7097					49	27	3	0	0	0	0.028476	1	2230	2230		51.335	22.186	1	101660	+		2055	28501	1512	1514	2920	2920					0.03716631583222352
APNGALLMGI	10	Unmodified	_APNGALLMGI_					0	0	0		nc|ENSG00000183704|A6NJY1|SLC9B1P1;ENST00000504216.5_1_4:103822276-103853306:-|nuORF;ENSG00000164037|ENST00000296422|SLC9B1	nc|ENSG00000183704|A6NJY1|SLC9B1P1	nc|ENSG00000183704|A6NJY1|SLC9B1P1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.7864990234375	2	478.76532	955.516088	-0.55122	-0.0002639	1.7781	0.0008513	1.2269	0.0005874	478.7656091100299	53.161	0.25349	49.953	49.844	50.097	-3.208					6	4	2	0	0	0	0.026768	1	3220	3220		31.955	1.4512	1	10571			2056	15213	1513	1515	2921	2921					0.036550155424492914
APNHDLVYHGI	11	Unmodified	_APNHDLVYHGI_					0	0	0			REV__tr|A0A553SHL9|A0A553SHL9_NIACIChromosomalreplicationinitiatorproteinDnaAOS=NialliacirculansOX=1397GN=dnaAPE=3SV=1	REV__tr|A0A553SHL9|A0A553SHL9_NIACIChromosomalreplicationinitiatorproteinDnaAOS=NialliacirculansOX=1397GN=dnaAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	412.5441589355469	3	412.543767	1234.60947	-0.29848	-0.00012314	3.1634	0.001305	2.8649	0.0011819	412.54500040495725	63.707	1.6813	60.962	60.427	62.108	-2.7444					93	31	4	0	0	0	0.5804	1	4817	4817		46.457	2.0796	1	573180	+		2057	29816	1514	1516	2922	2922					0.0015503124923270661
APNLKILNL	9	Unmodified	_APNLKILNL_					0	0	0		ENSG00000162231|ENST00000294172|NXF1;nc|ENSG00000162231|Q9UBU9-2|NXF1	ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3181457519531	2	498.316035	994.617516	0.35057	0.00017469	-0.6315	-0.00031469	-0.28093	-0.00013999	498.31544132617574	113.74	1.7217	112.29	112	113.72	-1.4461					78	33	3	0	0	0	0.31747	1	10542	10542		60.972	7.6205	1	189570			2058	6163	1515	1517	2923	2923					0.11999210236660929
APNLKILNL	9	Unmodified	_APNLKILNL_					0	0	0		ENSG00000162231|ENST00000294172|NXF1;nc|ENSG00000162231|Q9UBU9-2|NXF1	ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	498.316035	994.617516	0.46235	0.0002304	-0.67517	-0.00033645	-0.21282	-0.00010605	498.3153817480328	112.51	1.7282	112.39	111.98	113.71	-0.12173	0.066003	0.00012713	NaN	60.972	76	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141870			2059	6163	1515	1517							0.11999210236660929
APNLKILNL	9	Unmodified	_APNLKILNL_					0	0	0		ENSG00000162231|ENST00000294172|NXF1;nc|ENSG00000162231|Q9UBU9-2|NXF1	ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	498.316035	994.617516	0.62556	0.00031172	-0.92859	-0.00046273	-0.30303	-0.00015101	498.3153320310685	113.36	1.771	112.28	111.86	113.63	-1.0753	-0.037728	-0.00012544	NaN	60.972	71	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171680			2060	6163	1515	1517							0.11999210236660929
APNLKSQL	8	Unmodified	_APNLKSQL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	435.75701904296875	2	435.75581	869.497067	0.082497	3.5949E-05	0.011904	5.1871E-06	0.094401	4.1136E-05	435.75564995075706	62.739	1.3059	59.281	58.962	60.268	-3.4577					58	26	4	0	0	0	0.42649	2	4373	4373;4384		84.916	2.165	1	621810			2061	4552	1516	1518	2924;2925	2924					0.05709802243052309
APNLKSQL	8	Unmodified	_APNLKSQL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	435.75581	869.497067	-1.167	-0.00050853	1.5169	0.00066098	0.34985	0.00015245	435.756323608202	62.032	1.3691	59.273	58.777	60.146	-2.7593	-0.0040926	0.00073382	NaN	84.916	51	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123590			2062	4552	1516	1518							0.05709802243052309
APNPAPKEL	9	Unmodified	_APNPAPKEL_					0	0	0		ENSG00000082438|ENST00000652658|COBLL1;nc|ENSG00000082438|Q53SF7-3|COBLL1;nc|ENSG00000082438|Q53SF7-2|COBLL1	ENSG00000082438|ENST00000652658|COBLL1	ENSG00000082438|ENST00000652658|COBLL1	MULTI-MSMS	OvCa9_classI_Rep2	2	468.7610168457031	2	468.761092	935.507631	-0.81986	-0.00038432	0.84758	0.00039731	0.02772	1.2994E-05	468.7613295346182	56.798	1.338	53.994	53.523	54.861	-2.804					60	26	4	0	0	0	0.3249	1	4031	4031		60.118	12.461	1	195110			2063	1678	1517	1519	2926	2926					0.03729784897461741
APNPAPKEL	9	Unmodified	_APNPAPKEL_					0	0	0		ENSG00000082438|ENST00000652658|COBLL1;nc|ENSG00000082438|Q53SF7-3|COBLL1;nc|ENSG00000082438|Q53SF7-2|COBLL1	ENSG00000082438|ENST00000652658|COBLL1	ENSG00000082438|ENST00000652658|COBLL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	468.76220703125	2	468.761092	935.507631	0.43588	0.00020432	-0.67522	-0.00031652	-0.23934	-0.00011219	468.76067158701534	57.258	1.2212	53.913	53.577	54.799	-3.3449					81	23	5	0	0	0	0.083631	4	3723	3701;3711;3723;3736		101.6	23.459	1	1091100			2064	1678	1517	1519	2927;2928;2929;2930	2929					0.03729784897461741
APNQRRRLLL	10	Unmodified	_APNQRRRLLL_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000420783.7_1_3:49051556-49052718:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MULTI-MSMS	OvCa9_classI_Rep2	2	412.9271545410156	3	412.926434	1235.75747	-0.25244	-0.00010424	0.16708	6.899E-05	-0.085366	-3.525E-05	412.92657077571874	54.81	2.7333	51.996	51.573	54.306	-2.8139					157	54	5	0	0	0	0.50999	1	3815	3815		52.937	12.879	1	2429000			2065	7745	1518	1520	2931	2931					0.14902387293750508
APPAVLQVQL	10	Unmodified	_APPAVLQVQL_					0	0	0		ENST00000414656.1_1_9:139700878-139703284:-|nuORF	ENST00000414656.1_1_9:139700878-139703284:-|nuORF	ENST00000414656.1_1_9:139700878-139703284:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.3176879882812	2	518.313492	1034.61243	0.84383	0.00043737	4.0671	0.002108	4.911	0.0025454	518.3154752182903	139.75	1.2224	138.26	137.89	139.11	-1.4952					55	23	3	0	0	0	0.59703	1	13635	13635		42.396	3.1433	1	49596			2066	11581	1519	1521	2932	2932					0.09650906374031365
APPEYHRKAV	10	Unmodified	_APPEYHRKAV_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	OvCa9_classI_Rep2	2	584.31640625	2	584.317097	1166.61964	-2.3838	-0.0013929	2.289	0.0013375	-0.094767	-5.5374E-05	584.3183343503605	35.539	1.4389	32.829	32.503	33.942	-2.7097					76	28	4	0	0	0	0.47142	8	1450	1433;1444;1450;1455;1462;1468;1474;1487		58.23	25.418	1	473780			2067	8283	1520	1522	2933;2934;2935;2936;2937;2938;2939;2940	2935					0.04299638974453046
APPEYHRKAV	10	Unmodified	_APPEYHRKAV_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3165893554688	2	584.317097	1166.61964	0.15167	8.8621E-05	-0.32065	-0.00018736	-0.16898	-9.8739E-05	584.3168907797178	34.71	2.55	31.922	31.249	33.799	-2.7881					139	50	5	0	0	0	0.072307	9	1063	1004;1015;1027;1039;1051;1063;1075;1087;1099		120.87	76.491	1	1289200			2068	8283	1520	1522	2941;2942;2943;2944;2945;2946;2947;2948;2949	2946					0.04299638974453046
APPFNLSLL	9	Unmodified	_APPFNLSLL_					0	0	0		HERVH-int_dup2924|chr7:120779458-120782483:-|3.6914275035513295|0.0201601709888603|7.52|415.0|3|1|sense	HERVH-int_dup2924|chr7:120779458-120782483:-|3.6914275035513295|0.0201601709888603|7.52|415.0|3|1|sense	HERVH-int_dup2924|chr7:120779458-120782483:-|3.6914275035513295|0.0201601709888603|7.52|415.0|3|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.30401611328125	2	486.28166	970.548768	-2.0874	-0.001015	1.2191	0.00059282	-0.86827	-0.00042223	486.28196584020645	126.56	0.34701	125.14	124.97	125.32	-1.4143					9	6	2	0	0	0	0.027455	1	12041	12041		60.972	7.6205	1	13022			2069	14415	1521	1523	2950	2950					0.06231545936952898
APPHLLAASR	10	Unmodified	_APPHLLAASR_					0	0	0		ENST00000484265.1_1_9:15506557-15510916:-|nuORF;ENST00000488797.1_1_9:15492189-15510916:-|nuORF;ENST00000463712.6_1_9:15489396-15510916:-|nuORF	ENST00000484265.1_1_9:15506557-15510916:-|nuORF	ENST00000484265.1_1_9:15506557-15510916:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2833251953125	2	516.801083	1031.58761	1.4853	0.00076762	1.1264	0.00058213	2.6118	0.0013498	516.8016145751387	79.562	0.38813	79.562	79.394	79.783	0					18	9	3	0	0	0	0.026688	1	8138	8138		32.812	3.6629	1	1229900			2070	12232	1522	1524	2951	2951					0.07308271291321944
APPLFKLLS	9	Unmodified	_APPLFKLLS_					0	0	0			REV__Tigger4_dup106|chr1:206074674-206075604:+|2.263376500711114|0.099917421413694|4.5|421.0|35|2|anti-sense	REV__Tigger4_dup106|chr1:206074674-206075604:+|2.263376500711114|0.099917421413694|4.5|421.0|35|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.3301086425781	2	493.307678	984.600803	0.73479	0.00036248	1.5679	0.00077344	2.3027	0.0011359	493.30826792472317	157.67	0.45805	157.67	157.45	157.91	0					20	8	3	0	0	0	0.027462	1	18476	18476		17.365	8.5426	1	47174	+		2071	29504	1523	1525	2952	2952					0.10788709350720183
APPLLENSQ	9	Unmodified	_APPLLENSQ_					0	0	0		ENST00000266971.7_1_12:56391015-56391503:+|nuORF;ENST00000356124.8_1_12:56390964-56396374:+|nuORF	ENST00000266971.7_1_12:56391015-56391503:+|nuORF	ENST00000266971.7_1_12:56391015-56391503:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.7553405761719	2	484.756007	967.497461	0.65894	0.00031943	-4.2207	-0.002046	-3.5617	-0.0017266	484.753730615241	37.704	0.69775	34.811	34.591	35.289	-2.8925					36	13	3	0	0	0	0.61208	1	1414	1414		30.504	0.6621	1	85835			2072	9961	1524	1526	2953	2953					0.012411771722327103
APPLLENSQ	9	Unmodified	_APPLLENSQ_					0	0	0		ENST00000266971.7_1_12:56391015-56391503:+|nuORF;ENST00000356124.8_1_12:56390964-56396374:+|nuORF	ENST00000266971.7_1_12:56391015-56391503:+|nuORF	ENST00000266971.7_1_12:56391015-56391503:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	484.756007	967.497461	-1.1588	-0.00056175	3.0094	0.0014588	1.8506	0.00089707	484.7577236868479	34.655	0.46732	34.655	34.304	34.772	0	-0.077907	0.0066113	NaN	30.504	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44574			2073	9961	1524	1526							0.012411771722327103
APPQWSAPII	10	Unmodified	_APPQWSAPII_					0	0	0			REV__ENST00000473361.5_1_1:32259103-32263870:-|nuORF	REV__ENST00000473361.5_1_1:32259103-32263870:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	539.782958984375	2	540.297842	1078.58113	0.085651	4.6277E-05	-1.6919	-0.00091414	-1.6063	-0.00086786	540.2967937262866	37.619	0.39922	34.726	34.492	34.891	-2.8925					10	7	2	0	0	0	0.027056	1	1385	1385		27.882	3.6795	1	16476	+		2074	26329	1525	1527	2954	2954					0.04498333339938654
APPRAGKL	8	Unmodified	_APPRAGKL_					0	0	0		ENST00000376048.9_1_1:14075925-14142984:+|nuORF	ENST00000376048.9_1_1:14075925-14142984:+|nuORF	ENST00000376048.9_1_1:14075925-14142984:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	405.2569580078125	2	405.253237	808.491922	0.45913	0.00018607	4.3048	0.0017445	4.7639	0.0019306	405.25482244057065	66.012	1.1503	66.012	65.707	66.857	0					62	28	3	0	0	0	0.73288	1	6108	6108		35.201	6.9464	1	4259400			2075	11065	1526	1528	2955	2955					0.08001543171087633
APPRPGSSF	9	Unmodified	_APPRPGSSF_					0	0	0		nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.2388000488281	2	458.237784	914.461016	-0.12549	-5.7504E-05	0.54939	0.00025175	0.4239	0.00019425	458.23777585237934	56.342	1.5704	53.047	52.516	54.086	-3.2944					84	30	4	0	0	0	0.094616	1	3597	3597		98.629	29.843	1	498190			2076	8799	1527	1529	2956	2956					0.0003634506618936939
APPRPGSSF	9	Unmodified	_APPRPGSSF_					0	0	0		nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	MULTI-MATCH	OvCa9_classI_Rep2	2		2	458.237784	914.461016	-0.22673	-0.0001039	0.40886	0.00018736	0.18213	8.3459E-05	458.23784650145296	55.997	1.4356	53.193	52.681	54.117	-2.804	0.072878	-4.2844E-05	NaN	98.629	58	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98848			2077	8799	1527	1529							0.0003634506618936939
APPRTPLTAL	10	Unmodified	_APPRTPLTAL_					0	0	0		ENSG00000172201|ENST00000378700|ID4	ENSG00000172201|ENST00000378700|ID4	ENSG00000172201|ENST00000378700|ID4	MULTI-MSMS	OvCa9_classI_Rep2	2	518.8126831054688	2	518.811116	1035.60768	1.8637	0.00096692	-2.8661	-0.001487	-1.0023	-0.00052003	518.8096777874774	87.789	3.0579	86.358	85.791	88.849	-1.4311					163	61	6	0	0	0	0.15491	15	7672	7639;7642;7647;7654;7660;7666;7672;7678;7684;7690;7696;7702;7714;7721;7734		101.25	26.998	1	5567100			2078	7274	1528	1530	2957;2958;2959;2960;2961;2962;2963;2964;2965;2966;2967;2968;2969;2970;2971	2963					0.09130022231261137
APPRTPLTAL	10	Unmodified	_APPRTPLTAL_					0	0	0		ENSG00000172201|ENST00000378700|ID4	ENSG00000172201|ENST00000378700|ID4	ENSG00000172201|ENST00000378700|ID4	MULTI-MSMS	OvCa9_classI_Rep3	3	518.811279296875	2	518.811116	1035.60768	-0.049483	-2.5672E-05	-1.1441	-0.00059357	-1.1936	-0.00061924	518.8105741700431	88.52	3.827	86.389	85.803	89.63	-2.1309					168	75	5	0	0	0	0.12738	11	5368	5353;5357;5368;5374;5386;5392;5398;5411;5435;5442;5455		106.68	37.055	1	8533700			2079	7274	1528	1530	2972;2973;2974;2975;2976;2977;2978;2979;2980;2981;2982	2974					0.09130022231261137
APPRTPLTAL	10	Unmodified	_APPRTPLTAL_					0	0	0		ENSG00000172201|ENST00000378700|ID4	ENSG00000172201|ENST00000378700|ID4	ENSG00000172201|ENST00000378700|ID4	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.8119506835938	2	518.811116	1035.60768	-0.9287	-0.00048182	-0.27481	-0.00014257	-1.2035	-0.00062439	518.81101868621	89.013	3.7261	86.41	85.882	89.609	-2.6027					155	73	4	0	0	0	0.13777	7	7608	7596;7608;7620;7633;7645;7657;7670		104.06	26.394	1	7911300			2080	7274	1528	1530	2983;2984;2985;2986;2987;2988;2989	2984					0.09130022231261137
APPVTVKDDRT	11	Unmodified	_APPVTVKDDRT_					0	0	0		nc|ENSG00000106078|O75128-6|COBL;ENST00000462395.1_1_7:51085250-51098638:-|nuORF;nc|ENSG00000106078|O75128-3|COBL;ENSG00000106078|ENST00000265136|COBL;nc|ENSG00000106078|O75128-7|COBL;nc|ENSG00000106078|O75128-2|COBL	nc|ENSG00000106078|O75128-6|COBL	nc|ENSG00000106078|O75128-6|COBL	MULTI-MSMS	OvCa9_classI_Rep4_	4	400.22039794921875	3	400.21906	1197.63535	3.0734	0.0012301	1.7325	0.00069339	4.806	0.0019234	400.2196562441456	35.814	1.0982	32.965	32.69	33.788	-2.849					63	21	4	0	0	0	0.67685	1	1190	1190		37.6	3.6783	1	221280			2081	2527	1529	1531	2990	2990					0.044438807008418735
APQIPARAF	9	Unmodified	_APQIPARAF_					0	0	0		ENSG00000187609|ENST00000340951|EXD3;ENST00000478344.6_1_9:140240296-140248823:-|nuORF;nc|ENSG00000187609|Q8N9H8-2|EXD3;ENST00000487745.5_1_9:140201404-140247406:-|nuORF	ENSG00000187609|ENST00000340951|EXD3	ENSG00000187609|ENST00000340951|EXD3	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.7779846191406	2	485.777077	969.5396	0.11284	5.4817E-05	-1.162	-0.00056445	-1.0491	-0.00050963	485.77651440473693	47.516	2.1496	44.408	43.927	46.076	-3.1077					127	41	4	0	0	0	0.36502	1	2639	2639		55.504	2.5675	1	5266400			2082	8419	1530	1532	2991	2991					0.053611973712691
APQRSQSPL	9	Unmodified	_APQRSQSPL_					0	0	0		ENSG00000151929|ENST00000369085|BAG3;BAG3|p.R139W|1|0.42|ENSG00000151929|chr10:119670085-119670085|C/T|missense_variant	ENSG00000151929|ENST00000369085|BAG3;BAG3|p.R139W|1|0.42|ENSG00000151929|chr10:119670085-119670085|C/T|missense_variant	ENSG00000151929|ENST00000369085|BAG3	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.2691650390625	2	492.267073	982.519593	-0.76063	-0.00037443	3.1923	0.0015715	2.4317	0.001197	492.2688298138802	45.363	1.0409	42.325	42.023	43.064	-3.0385					33	19	2	0	0	0	0.2784	2	2314	2314;2327		65.465	16.024	1	625540			2083	5596;142	1531	1533	2992;2993	2992					0.027634016406636874
APRALTAL	8	Unmodified	_APRALTAL_					0	0	0		ENST00000303400.8_1_4:1330733-1332271:+|nuORF;ENST00000514708.5_1_4:1309356-1332271:+|nuORF;MAEA|p.Q268Hfs*54|1|0.21|ENSG00000090316|chr4:1336899-1336899|G/-|frameshift_variant	ENST00000303400.8_1_4:1330733-1332271:+|nuORF	ENST00000303400.8_1_4:1330733-1332271:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	406.7531433105469	2	406.75307	811.491587	0.7718	0.00031393	-0.80042	-0.00032557	-0.028618	-1.164E-05	406.7526534816959	74.321	1.5667	72.35	71.587	73.154	-1.9711					79	29	3	0	0	0	0.60331	1	6078	6078		63.306	11.971	1	298120			2084	10213	1532	1534	2994	2994					0.07830123451208237
APRARSPVLLN	11	Unmodified	_APRARSPVLLN_					0	0	0			REV__ENST00000244776.11_1_6:18258274-18264769:-|nuORF	REV__ENST00000244776.11_1_6:18258274-18264769:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.3576049804688	2	597.359296	1192.70404	-4.9941	-0.0029833	3.7151	0.0022192	-1.279	-0.00076402	597.361356414137	157.6	0.96988	156.05	155.73	156.7	-1.545					62	25	3	0	0	0	0.72064	1	15593	15593		22.58	3.4761	1	81979	+		2085	23834	1533	1535	2995	2995					0.11539589791232174
APREHSYVL	9	Unmodified	_APREHSYVL_					0	0	0		nc|ENSG00000147394|O15231-2|ZNF185;nc|ENSG00000147394|O15231-4|ZNF185;nc|ENSG00000147394|O15231-7|ZNF185;nc|ENSG00000147394|O15231|ZNF185;nc|ENSG00000147394|O15231-3|ZNF185;nc|ENSG00000147394|O15231-8|ZNF185;nc|ENSG00000147394|O15231-6|ZNF185;ENSG00000147394|ENST00000695776|ZNF185	nc|ENSG00000147394|O15231-2|ZNF185	nc|ENSG00000147394|O15231-2|ZNF185	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.2901611328125	2	536.282723	1070.55089	-1.8215	-0.00097686	1.2389	0.00066438	-0.58267	-0.00031248	536.2834321345357	54.61	1.6352	51.362	50.876	52.511	-3.2474					66	31	3	0	0	0	0.46356	1	3389	3389		45.972	1.5951	1	475200			2086	5352	1534	1536	2996	2996					0.01843974674761739
APREHSYVL	9	Unmodified	_APREHSYVL_					0	0	0		nc|ENSG00000147394|O15231-2|ZNF185;nc|ENSG00000147394|O15231-4|ZNF185;nc|ENSG00000147394|O15231-7|ZNF185;nc|ENSG00000147394|O15231|ZNF185;nc|ENSG00000147394|O15231-3|ZNF185;nc|ENSG00000147394|O15231-8|ZNF185;nc|ENSG00000147394|O15231-6|ZNF185;ENSG00000147394|ENST00000695776|ZNF185	nc|ENSG00000147394|O15231-2|ZNF185	nc|ENSG00000147394|O15231-2|ZNF185	MULTI-MATCH	OvCa9_classI_Rep2	2		2	536.282723	1070.55089	-1.9496	-0.0010455	1.7077	0.00091581	-0.2419	-0.00012973	536.2834431334608	54.232	1.2975	51.418	50.975	52.272	-2.8139	0.028128	0.00022143	NaN	45.972	59	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152450			2087	5352	1534	1536							0.01843974674761739
APRGEGPAI	9	Unmodified	_APRGEGPAI_					0	0	0		nc|ENSG00000177380|O75145-2|PPFIA3;ENSG00000177380|ENST00000334186|PPFIA3;TRPM4-PPFIA3|1|fusion	nc|ENSG00000177380|O75145-2|PPFIA3	nc|ENSG00000177380|O75145-2|PPFIA3	MULTI-MSMS	OvCa9_classI_Rep4_	4	434.2388916015625	2	434.237784	866.461016	-0.36642	-0.00015911	0.055952	2.4297E-05	-0.31047	-0.00013482	434.2377917067733	54.866	1.9335	51.619	51.234	53.167	-3.2474					98	37	4	0	0	0	0.22621	2	3445	3433;3445		71.877	6.0743	1	2937400			2088	7674	1535	1537	2997;2998	2998					0.022443450661853603
APRGKSGAAL	10	Unmodified	_APRGKSGAAL_					0	0	0		ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	OvCa9_classI_Rep2	2	464.2723083496094	2	464.272158	926.529764	-0.77313	-0.00035894	0.52936	0.00024577	-0.24377	-0.00011318	464.2722437694747	32.813	1.0946	30.104	29.877	30.972	-2.7097					56	21	4	0	0	0	0.42962	2	1125	1114;1125		64.207	8.7031	1	453740			2089	5096	1536	1538	2999;3000	3000					0.06356009365879345
APRGLKRR	8	Unmodified	_APRGLKRR_					0	0	0			REV__ENST00000268035.10_1_15:99192229-99192595:+|nuORF	REV__ENST00000268035.10_1_15:99192229-99192595:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.2916564941406	2	477.30941	952.604266	-0.61298	-0.00029258	-3.0517	-0.0014566	-3.6647	-0.0017492	477.3089863408669	74.043	0.52607	72.072	71.745	72.271	-1.9711					12	9	2	0	0	0	0.028476	1	6069	6069		15.636	0	1	7599.8	+		2090	24052	1537	1539	3001	3001					0.12606816967934265
APRGPGAEL	9	Unmodified	_APRGPGAEL_					0	0	0		ENSG00000213445|ENST00000534313|SIPA1	ENSG00000213445|ENST00000534313|SIPA1	ENSG00000213445|ENST00000534313|SIPA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	434.2389831542969	2	434.237784	866.461016	-0.36642	-0.00015911	0.055952	2.4297E-05	-0.31047	-0.00013482	434.2377917067733	54.866	1.9335	51.619	51.234	53.167	-3.2474					98	37	4	0	0	0	0.22621	2	3422	3422;3458		71.877	5.98	1	2937400			2091	9129	1538	1540	3002;3003	3002					0.022443450661853603
APRGPGAEL	9	Unmodified	_APRGPGAEL_					0	0	0		ENSG00000213445|ENST00000534313|SIPA1	ENSG00000213445|ENST00000534313|SIPA1	ENSG00000213445|ENST00000534313|SIPA1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	434.237784	866.461016	-0.90711	-0.0003939	1.1305	0.00049091	0.22341	9.7012E-05	434.2381681187348	54.711	1.7417	51.897	51.325	53.067	-2.8139	0.13923	0.00048813	NaN	71.877	86	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	506140			2092	9129	1538	1540							0.022443450661853603
APRHPSTNSL	10	Unmodified	_APRHPSTNSL_					0	0	0		ENSG00000123545|ENST00000316149|NDUFAF4;ENST00000489477.1_1_6:97344023-97345677:-|nuORF	ENSG00000123545|ENST00000316149|NDUFAF4	ENSG00000123545|ENST00000316149|NDUFAF4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.7880859375	2	540.283254	1078.55196	-1.4589	-0.0007882	0.27165	0.00014677	-1.1872	-0.00064143	540.2838045254847	40.613	1.0449	37.658	37.421	38.466	-2.9541					25	19	2	0	0	0	0.026674	1	1756	1756		56.434	17.181	1	166260			2093	3601	1539	1541	3004	3004					0.01582189043665494
APRHPSTNSL	10	Unmodified	_APRHPSTNSL_					0	0	0		ENSG00000123545|ENST00000316149|NDUFAF4;ENST00000489477.1_1_6:97344023-97345677:-|nuORF	ENSG00000123545|ENST00000316149|NDUFAF4	ENSG00000123545|ENST00000316149|NDUFAF4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	540.283254	1078.55196	-0.81765	-0.00044176	0.82584	0.00044619	0.0081879	4.4238E-06	540.2838507033327	40.246	0.54715	37.536	37.202	37.749	-2.7097	-0.061226	0.00032749	NaN	56.434	16	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32229			2094	3601	1539	1541							0.01582189043665494
APRKAPPKL	9	Unmodified	_APRKAPPKL_					0	0	0			REV__FER1L6|p.G765A|1|0.21|ENSG00000214814|chr8:124035284-124035284|G/C|missense_variant	REV__FER1L6|p.G765A|1|0.21|ENSG00000214814|chr8:124035284-124035284|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	489.3138732910156	2	489.316369	976.618185	-5.0625	-0.0024771	0.75357	0.00036874	-4.3089	-0.0021084	489.3166161919068	151.03	1.2523	150.08	149.76	151.01	-0.95647					68	24	4	0	0	0	0.69895	1	12879	12879		18.324	3.6603	1	299480	+		2095	28133	1540	1542	3005	3005					0.12894049676367558
APRKGPPK	8	Unmodified	_APRKGPPK_					0	0	0			REV__ENSG00000214814|ENST00000522917|FER1L6	REV__ENSG00000214814|ENST00000522917|FER1L6	MULTI-SECPEP	OvCa99_classI_Rep5	1	424.8811950683594	2	425.766512	849.518471	-0.2454	-0.00010448	0.36662	0.00015609	0.12122	5.1611E-05	425.7665625893233	55.172	0.3381	55.172	54.935	55.273	0					12	7	2	0	0	0	0.028476	1	4496	4496		19.36	3.7238	1	210510	+		2096	23299	1541	1543	3006	3006					0.08769232062422816
APRKPANTL	9	Unmodified	_APRKPANTL_					0	0	0		ENSG00000133422|ENST00000397641|MORC2;MORC2|p.S686Afs*42|1|0.12|ENSG00000133422|chr22:30934896-30934918|TGCACCAGAGGGGCAGGTCGGGA/-|frameshift_variant;nc|ENSG00000133422|Q9Y6X9-2|MORC2;MORC2|p.E672Q|1|0.11|ENSG00000133422|chr22:30934960-30934960|C/G|missense_variant	ENSG00000133422|ENST00000397641|MORC2	ENSG00000133422|ENST00000397641|MORC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.28814697265625	2	484.287808	966.561064	0.83916	0.0004064	-1.1698	-0.00056651	-0.33063	-0.00016012	484.28710186592366	37.296	1.4439	34.403	34.142	35.586	-2.8925					55	28	4	0	0	0	0.68424	1	1372	1372		21.96	2.5999	1	173320			2097	4220	1542	1544	3007	3007					0.07644582399984756
APRKPDWDL	9	Unmodified	_APRKPDWDL_					0	0	0		ENSG00000160799|ENST00000683445|CCDC12	ENSG00000160799|ENST00000683445|CCDC12	ENSG00000160799|ENST00000683445|CCDC12	MULTI-MSMS	OvCa9_classI_Rep2	2	549.2911376953125	2	549.290548	1096.56654	-0.4472	-0.00024564	0.14999	8.239E-05	-0.2972	-0.00016325	549.2905935733277	68.893	1.9973	66.272	65.869	67.866	-2.6203					69	39	2	0	0	0	0.26076	1	5448	5448		67.494	14.557	1	809470			2098	6093	1543	1545	3008	3008					0.022122611917893664
APRKPDWDL	9	Unmodified	_APRKPDWDL_					0	0	0		ENSG00000160799|ENST00000683445|CCDC12	ENSG00000160799|ENST00000683445|CCDC12	ENSG00000160799|ENST00000683445|CCDC12	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.291748046875	2	549.290548	1096.56654	-0.9193	-0.00050496	0.86799	0.00047678	-0.051305	-2.8181E-05	549.2907565601845	69.872	1.5976	66.391	65.91	67.508	-3.4812					142	32	7	0	0	0	0.16562	2	5264	5252;5264		82.241	32.055	1	1222000			2099	6093	1543	1545	3009;3010	3010					0.022122611917893664
APRKQILTL	9	Unmodified	_APRKQILTL_					0	0	0		ENST00000528758.1_1_11:7507087-7531416:+|nuORF;ENSG00000183801|ENST00000329293|OLFML1	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3338012695312	2	520.334759	1038.65496	-0.059232	-3.082E-05	-0.65104	-0.00033876	-0.71027	-0.00036958	520.3343753837619	67.127	1.729	64.466	64.099	65.828	-2.661					90	34	4	0	0	0	0.51865	3	5250	5227;5250;5257		40.778	6.6056	1	916860			2100	8108	1544	1546	3011;3012;3013	3012					0.13718301502285613
APRKQILTL	9	Unmodified	_APRKQILTL_					0	0	0		ENST00000528758.1_1_11:7507087-7531416:+|nuORF;ENSG00000183801|ENST00000329293|OLFML1	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.3356323242188	2	520.334759	1038.65496	0.64368	0.00033493	-1.2042	-0.00062656	-0.56047	-0.00029163	520.3340550470737	68.036	1.3701	64.546	64.284	65.654	-3.4902					71	27	4	0	0	0	0.42676	2	5037	5037;5050		49.442	2.3082	1	1115700			2101	8108	1544	1546	3014;3015	3014					0.13718301502285613
APRLGLLKP	9	Unmodified	_APRLGLLKP_					0	0	0		ENST00000473682.5_1_1:111740397-111743081:-|nuORF	ENST00000473682.5_1_1:111740397-111743081:-|nuORF	ENST00000473682.5_1_1:111740397-111743081:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	482.2494201660156	2	482.818744	963.622936	-0.33432	-0.00016142	0.28782	0.00013896	-0.046507	-2.2455E-05	482.8187177406195	62.494	0.58842	59.036	58.815	59.403	-3.4577					23	11	3	0	0	0	0.027462	1	4330	4330		27.882	15.675	1	55122			2102	12418	1545	1547	3016	3016					0.1396693381911973
APRLGLLKP	9	Unmodified	_APRLGLLKP_					0	0	0		ENST00000473682.5_1_1:111740397-111743081:-|nuORF	ENST00000473682.5_1_1:111740397-111743081:-|nuORF	ENST00000473682.5_1_1:111740397-111743081:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	482.818744	963.622936	-1.522	-0.00073484	1.2476	0.00060238	-0.27436	-0.00013247	482.81923620960896	61.498	0.87156	58.739	58.464	59.335	-2.7593	-0.14853	0.00035033	NaN	27.882	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36859			2103	12418	1545	1547							0.1396693381911973
APRLGLSL	8	Unmodified	_APRLGLSL_					0	0	0			REV__ENST00000477680.5_1_7:4829853-4831013:+|nuORF	REV__ENST00000477680.5_1_7:4829853-4831013:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	413.76190185546875	2	413.760895	825.507237	0.12259	5.0723E-05	-0.31707	-0.00013119	-0.19448	-8.0468E-05	413.7606219208656	95.584	1.6592	93.755	93.481	95.14	-1.8286					70	32	4	0	0	0	0.40148	2	6246	6236;6246		87.754	0	1	647280	+		2104	26393	1546	1548	3017;3018	3018					0.08750409968274653
APRLNSADRPM	11	Oxidation (M)	_APRLNSADRPM(Oxidation (M))_		APRLNSADRPM(1)		APRLNSADRPM(81)	0	0	1		nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	MULTI-MSMS	OvCa9_classI_Rep2	2	415.2119445800781	3	415.211911	1242.6139	1.1762	0.00048839	-1.0184	-0.00042285	0.15786	6.5544E-05	415.211454833083	43.445	2.1858	40.735	40.312	42.497	-2.7097					95	43	4	0	0	0	0.19299	5	2405	2392;2398;2405;2411;2417		80.916	32.238	1	393120			2105	15236	1547	1549	3019;3020;3021;3022;3023	3021		371			0.0023017240048375243
APRLNSADRPM	11	Oxidation (M)	_APRLNSADRPM(Oxidation (M))_		APRLNSADRPM(1)		APRLNSADRPM(44)	0	0	1		nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	MULTI-MSMS	OvCa9_classI_Rep2	2	622.3140258789062	2	622.314229	1242.6139	-0.10387	-6.4642E-05	-0.19123	-0.000119	-0.2951	-0.00018365	622.3142151545446	43.428	1.8861	40.718	40.114	42	-2.7097					87	37	4	0	0	0	0.6112	1	2394	2394		43.651	25.389	1	310440			2106	15236	1547	1549	3024	3024		371			0.0023017240048375243
APRLNSADRPM	11	Oxidation (M)	_APRLNSADRPM(Oxidation (M))_		APRLNSADRPM(1)		APRLNSADRPM(110)	0	0	1		nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	415.2120666503906	3	415.211911	1242.6139	-0.93649	-0.00038884	0.80595	0.00033464	-0.13054	-5.42E-05	415.2123538171205	43.674	2.0417	40.666	40.168	42.209	-3.0074					131	39	5	0	0	0	0.054709	8	2095	2086;2095;2108;2119;2132;2147;2159;2170		128.51	74.917	1	2301100			2107	15236	1547	1549	3025;3026;3027;3028;3029;3030;3031;3032	3026		371			0.0023017240048375243
APRLNSADRPM	11	Unmodified	_APRLNSADRPM_					0	0	0		nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	MULTI-MSMS	OvCa9_classI_Rep2	2	409.88055419921875	3	409.880273	1226.61899	-0.17802	-7.2968E-05	0.64415	0.00026403	0.46613	0.00019106	409.88034409875627	52.182	1.4338	49.369	48.996	50.43	-2.8129					84	28	4	0	0	0	0.61983	2	3465	3465;3480		52.167	19.261	1	479560			2108	15236	1547	1550	3033;3034	3033					0.014744762630925834
APRLNSADRPM	11	Unmodified	_APRLNSADRPM_					0	0	0		nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	409.8809814453125	3	409.880273	1226.61899	0.42283	0.00017331	-0.79072	-0.0003241	-0.36789	-0.00015079	409.88000873837314	52.479	1.7153	49.271	48.943	50.659	-3.208					98	33	5	0	0	0	0.48812	3	3136	3136;3145;3171		63.694	19.317	1	1779200			2109	15236	1547	1550	3035;3036;3037	3035					0.014744762630925834
APRLPITGL	9	Unmodified	_APRLPITGL_					0	0	0		ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MULTI-MSMS	OvCa9_classI_Rep2	2	469.2950744628906	2	469.295102	936.575651	-1.0303	-0.00048351	0.48143	0.00022593	-0.54885	-0.00025757	469.2953279738589	102.78	2.1727	102.09	101.49	103.66	-0.68459					130	43	5	0	0	0	0.070405	11	9454	9454;9460;9465;9471;9477;9483;9489;9501;9510;9517;9529		107.01	31.564	1	1527700			2110	6817	1548	1551	3038;3039;3040;3041;3042;3043;3044;3045;3046;3047;3048	3038					0.10482654548115988
APRLPITGL	9	Unmodified	_APRLPITGL_					0	0	0		ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MULTI-MSMS	OvCa9_classI_Rep3	3	469.2957458496094	2	469.295102	936.575651	0.44938	0.00021089	-1.1746	-0.00055122	-0.72519	-0.00034033	469.2945672205302	103.63	1.8276	102.19	101.81	103.64	-1.4347					66	34	2	0	0	0	0.064985	10	7192	7171;7175;7180;7186;7192;7199;7206;7212;7218;7226		110.12	46.814	1	2004600			2111	6817	1548	1551	3049;3050;3051;3052;3053;3054;3055;3056;3057;3058	3053					0.10482654548115988
APRLPITGL	9	Unmodified	_APRLPITGL_					0	0	0		ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	ENSG00000167625|ENST00000301215|ZNF526	MULTI-MSMS	OvCa9_classI_Rep4_	4	469.294677734375	2	469.295102	936.575651	-0.019563	-9.1809E-06	-0.48546	-0.00022782	-0.50502	-0.00023701	469.29487709543525	104.25	2.1088	102.13	101.48	103.59	-2.1192					129	40	5	0	0	0	0.10502	7	9440	9419;9428;9440;9453;9465;9477;9491		95.815	19.074	1	1899600			2112	6817	1548	1551	3059;3060;3061;3062;3063;3064;3065	3061					0.10482654548115988
APRLQLLF	8	Unmodified	_APRLQLLF_					0	0	0			REV__ENST00000515662.6_1_3:9404841-9404982:+|nuORF	REV__ENST00000515662.6_1_3:9404841-9404982:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	479.29742431640625	2	479.297645	956.580737	-0.75064	-0.00035978	0.51879	0.00024865	-0.23185	-0.00011113	479.29773010897736	115.4	1.335	115.29	115	116.33	-0.11777					67	26	3	0	0	0	0.71369	1	11014	11014		40.573	3.4135	1	535680	+		2113	27002	1549	1552	3066	3066					0.10070958410756248
APRLQLLF	8	Unmodified	_APRLQLLF_					0	0	0			REV__ENST00000515662.6_1_3:9404841-9404982:+|nuORF	REV__ENST00000515662.6_1_3:9404841-9404982:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	479.298583984375	2	479.297645	956.580737	-0.26237	-0.00012575	0.061204	2.9335E-05	-0.20117	-9.6419E-05	479.29752817551383	116.42	1.3352	115.38	115	116.33	-1.0414					70	26	3	0	0	0	0.71369	1	8681	8681		40.573	3.5441	1	529340	+		2114	27002	1549	1552	3067	3067					0.10070958410756248
APRLQLLF	8	Unmodified	_APRLQLLF_					0	0	0			REV__ENST00000515662.6_1_3:9404841-9404982:+|nuORF	REV__ENST00000515662.6_1_3:9404841-9404982:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.297607421875	2	479.297645	956.580737	-0.079368	-3.8041E-05	-0.32096	-0.00015384	-0.40033	-0.00019188	479.29735582244143	116.79	1.2501	115.43	115.04	116.29	-1.3645					65	23	3	0	0	0	0.66704	1	10917	10917		50.025	0.58299	1	647920	+		2115	27002	1549	1552	3068	3068					0.10070958410756248
APRLQRLP	8	Unmodified	_APRLQRLP_					0	0	0			REV__Harlequin-int_dup413|chr13:22884030-22884897:+|1.0861558209308977|0.0349924675237053|4.96|401.0|13|2|sense	REV__Harlequin-int_dup413|chr13:22884030-22884897:+|1.0861558209308977|0.0349924675237053|4.96|401.0|13|2|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	475.79840087890625	2	475.798343	949.582134	-1.1416	-0.00054318	1.0631	0.00050583	-0.078494	-3.7347E-05	475.7987527158406	55.46	1.1933	52.646	52.022	53.215	-2.8139					74	23	4	0	0	0	0.74679	1	3863	3863		28.254	1.4582	1	547610	+		2116	28188	1550	1553	3069	3069					0.10532592499498605
APRLQSEVAEL	11	Unmodified	_APRLQSEVAEL_					0	0	0		nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF;nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-2|IST1	nc|ENSG00000182149|P53990-2|IST1	MULTI-MSMS	OvCa9_classI_Rep2	2	606.8339233398438	2	606.832777	1211.651	0.87439	0.00053061	-1.0614	-0.0006441	-0.18703	-0.00011349	606.8318108251257	87.469	2.3648	86.038	85.642	88.007	-1.4311					115	47	6	0	0	0	0.10199	3	7629	7629;7641;7648		96.665	22.972	1	1990900			2117	7970	1551	1554	3070;3071;3072	3070					0.05364167217908289
APRLQSEVAEL	11	Unmodified	_APRLQSEVAEL_					0	0	0		nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF;nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-2|IST1	nc|ENSG00000182149|P53990-2|IST1	MULTI-MSMS	OvCa9_classI_Rep3	3	606.83447265625	2	606.832777	1211.651	1.2167	0.00073836	-1.7506	-0.0010624	-0.5339	-0.00032399	606.8317229441808	88.223	2.4058	86.092	85.803	88.209	-2.1309					100	47	3	0	0	0	0.1126	6	5363	5344;5350;5356;5363;5369;5383		94.409	44.968	1	3192200			2118	7970	1551	1554	3073;3074;3075;3076;3077;3078	3076					0.05364167217908289
APRLQSEVAEL	11	Unmodified	_APRLQSEVAEL_					0	0	0		nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF;nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-2|IST1	nc|ENSG00000182149|P53990-2|IST1	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.833984375	2	606.832777	1211.651	-0.90329	-0.00054814	0.73165	0.00044399	-0.17164	-0.00010415	606.8329716464679	88.612	1.9421	86.009	85.73	87.672	-2.6027					90	38	3	0	0	0	0.12738	2	7578	7578;7603		91.265	54.106	1	2985500			2119	7970	1551	1554	3079;3080	3079					0.05364167217908289
APRNIHRHVIL	11	Unmodified	_APRNIHRHVIL_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89971082-89977643:+|nuORF;ENST00000563484.1_1_16:89971421-89975542:+|nuORF;ENST00000570217.1_1_16:89972581-89984411:+|nuORF	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-MSMS	OvCa9_classI_Rep2	2	442.6009216308594	3	442.60195	1324.78402	0.47843	0.00021175	-0.68939	-0.00030513	-0.21097	-9.3375E-05	442.60159734649346	49.766	2.5262	47.006	46.523	49.049	-2.7603					125	50	5	0	0	0	0.68059	2	3173	3173;3197		36.318	2.5408	1	549840			2120	4889	1552	1555	3081;3082	3081					0.1346207618507833
APRPASGPIRP	11	Unmodified	_APRPASGPIRP_					0	0	0		ENST00000565571.5_1_16:89627367-89628201:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000563749.1_1_16:89627605-89627911:+|nuORF	ENST00000565571.5_1_16:89627367-89628201:+|nuORF	ENST00000565571.5_1_16:89627367-89628201:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	559.8246459960938	2	559.825089	1117.63563	-0.22671	-0.00012692	-0.48007	-0.00026875	-0.70677	-0.00039567	559.8248187280101	48.115	1.5889	45.405	44.935	46.524	-2.7097					74	31	4	0	0	0	0.50761	1	2951	2951		53.089	3.5529	1	475870			2121	6798	1553	1556	3083	3083					0.08151345211376793
APRPASGPIRP	11	Unmodified	_APRPASGPIRP_					0	0	0		ENST00000565571.5_1_16:89627367-89628201:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000563749.1_1_16:89627605-89627911:+|nuORF	ENST00000565571.5_1_16:89627367-89628201:+|nuORF	ENST00000565571.5_1_16:89627367-89628201:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.8262939453125	2	559.825089	1117.63563	0.24704	0.0001383	-1.0654	-0.00059641	-0.81832	-0.00045812	559.8245195702754	48.533	1.7084	45.425	44.988	46.697	-3.1077					91	32	5	0	0	0	0.090942	1	2662	2662		99.013	16.772	1	2308500			2122	6798	1553	1556	3084	3084					0.08151345211376793
APRPDRLVNRL	11	Unmodified	_APRPDRLVNRL_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	OvCa9_classI_Rep2	2	436.2605895996094	3	436.261594	1305.76295	0.012007	5.2382E-06	-0.41967	-0.00018309	-0.40767	-0.00017785	436.2615773396781	64.106	2.7222	61.381	60.915	63.637	-2.7245					177	52	5	0	0	0	0.20362	11	4869	4855;4863;4869;4875;4881;4912;4919;4926;4931;4937;4951		79.489	29.73	1	5858100			2123	927	1554	1557	3085;3086;3087;3088;3089;3090;3091;3092;3093;3094;3095	3087					0.12230066085544422
APRPDRLVNRL	11	Unmodified	_APRPDRLVNRL_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	OvCa9_classI_Rep3	3	436.2613220214844	3	436.261594	1305.76295	1.694	0.00073904	-2.0677	-0.00090204	-0.37362	-0.00016299	436.26077678089143	64.483	2.8395	61.49	61.14	63.98	-2.9933					174	55	5	0	0	0	0.16394	14	2507	2483;2495;2501;2507;2513;2531;2537;2543;2549;2555;2567;2573;2579;2618		84.817	28.167	1	3808000			2124	927	1554	1557	3096;3097;3098;3099;3100;3101;3102;3103;3104;3105;3106;3107;3108;3109	3099					0.12230066085544422
APRPDRLVNRL	11	Unmodified	_APRPDRLVNRL_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.2622985839844	3	436.261594	1305.76295	0.30224	0.00013186	-0.78005	-0.00034031	-0.47781	-0.00020845	436.26132611896287	65.037	2.5312	61.551	61.163	63.694	-3.4854					175	51	6	0	0	0	0.41331	5	4669	4635;4645;4669;4681;4709		60.167	27.128	1	6796800			2125	927	1554	1557	3110;3111;3112;3113;3114	3112					0.12230066085544422
APRPDSRHHSL	11	Unmodified	_APRPDSRHHSL_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34;ENST00000496583.1_1_19:54695101-54695536:+|nuORF	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	OvCa9_classI_Rep2	2	424.8897705078125	3	424.890048	1271.64832	-0.9883	-0.00041992	0.8719	0.00037046	-0.1164	-4.9459E-05	424.8904354672349	33.271	1.2911	30.562	30.321	31.612	-2.7097					77	25	4	0	0	0	0.68391	1	1168	1168		35.178	3.544	1	615830			2126	7149	1555	1558	3115	3115					0.023357566036111166
APRPDSRHHSL	11	Unmodified	_APRPDSRHHSL_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34;ENST00000496583.1_1_19:54695101-54695536:+|nuORF	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	OvCa9_classI_Rep2	2	636.8314819335938	2	636.831434	1271.64832	-1.7858	-0.0011373	1.7502	0.0011146	-0.035617	-2.2682E-05	636.8324728974585	33.272	1.1921	30.562	30.321	31.513	-2.7097					69	23	4	0	0	0	0.20674	3	1187	1187;1201;1206		80.455	9.1256	1	314610			2127	7149	1555	1558	3116;3117;3118	3116					0.023357566036111166
APRPDSRHHSL	11	Unmodified	_APRPDSRHHSL_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34;ENST00000496583.1_1_19:54695101-54695536:+|nuORF	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	OvCa9_classI_Rep4_	4	424.8900146484375	3	424.890048	1271.64832	-0.11144	-4.7351E-05	-0.3442	-0.00014625	-0.45565	-0.0001936	424.89005057309436	20.59	2.4808	19.252	18.851	21.331	-1.3386					183	49	7	0	0	0	0.41331	5	80	56;80;92;113;138		60.167	17.924	1	5179600			2128	7149	1555	1558	3119;3120;3121;3122;3123	3120					0.023357566036111166
APRPDSRHHSL	11	Unmodified	_APRPDSRHHSL_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34;ENST00000496583.1_1_19:54695101-54695536:+|nuORF	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	OvCa9_classI_Rep4_	4	636.8321533203125	2	636.831434	1271.64832	0.048143	3.0659E-05	0.24657	0.00015702	0.29471	0.00018768	636.8315313630583	20.592	1.3682	19.254	18.902	20.27	-1.3386					80	27	4	0	0	0	0.20674	3	63	63;75;87		70.816	22.857	1	475280			2129	7149	1555	1558	3124;3125;3126	3124					0.023357566036111166
APRPGLLSL	9	Unmodified	_APRPGLLSL_					0	0	0		nc|ENSG00000011451|O95785|WIZ;ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785-3|WIZ;ENSG00000011451.21,WIZ,chr19,-,I7.1,15432762,15433164|90|6.04|3|intron;ENSG00000011451.21,WIZ,chr19,-,I7.1,15432762,15433164|90|6.04|2|intron;ENSG00000011451.21,WIZ,chr19,-,I7.1,15432762,15433164|90|6.04|4|intron;ENSG00000011451.21,WIZ,chr19,-,I7.1,15432762,15433164|90|6.04|6|intron;ENSG00000011451.21,WIZ,chr19,-,I7.1,15432762,15433164|90|6.04|5|intron;ENSG00000011451.21,WIZ,chr19,-,I7.1,15432762,15433164|90|6.04|1|intron;WIZ|p.A336Gfs*19|1|0.29|ENSG00000011451|chr19:15427058-15427059|-/TTGACCTCTGCTGGGAGGAGGCGGTCCT|frameshift_variant;ENSG00000011451.21,WIZ,chr19,-,I7.1,15432762,15433164|90|6.04|8|intron	nc|ENSG00000011451|O95785|WIZ	nc|ENSG00000011451|O95785|WIZ	MULTI-MSMS	OvCa9_classI_Rep3	3	462.28765869140625	2	462.287277	922.560001	-0.38212	-0.00017665	-0.037227	-1.7209E-05	-0.41934	-0.00019386	462.2871601553284	98.31	1.4913	96.55	96.11	97.601	-1.7595					81	28	4	0	0	0	0.12515	1	6569	6569		90.37	2.6155	1	860650			2130	965	1556	1559	3127	3127					0.09562368031083679
APRPLRGLA	9	Unmodified	_APRPLRGLA_					0	0	0			REV__ERC1-CACNA1C|23|fusion	REV__ERC1-CACNA1C|23|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.79986572265625	2	475.798343	949.582134	0.022058	1.0495E-05	-0.19228	-9.1485E-05	-0.17022	-8.099E-05	475.7981725614516	55.904	1.5182	52.61	52.16	53.679	-3.2944					77	29	4	0	0	0	0.6653	1	3567	3567		24.203	1.1603	1	951660	+		2131	28114	1557	1560	3128	3128					0.10532592499509974
APRPPPKPM	9	Oxidation (M)	_APRPPPKPM(Oxidation (M))_		APRPPPKPM(1)		APRPPPKPM(50)	0	0	1		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-MSMS	OvCa9_classI_Rep2	2	503.7782897949219	2	503.778762	1005.54297	-3.0867	-0.001555	2.9827	0.0015026	-0.10408	-5.2431E-05	503.78006253314857	36.309	2.2758	33.6	32.75	35.026	-2.7097					126	45	4	0	0	0	0.42057	1	1589	1589		50.025	7.6284	1	296190			2132	8740	1558	1561	3129	3129		263			0.040421241536364505
APRPPPKPM	9	Unmodified	_APRPPPKPM_					0	0	0		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.7823181152344	2	495.781305	989.548056	-1.0728	-0.00053187	0.19253	9.5455E-05	-0.88026	-0.00043642	495.7812739834416	44.548	2.2506	41.51	40.762	43.013	-3.0385					117	43	4	0	0	0	0.48324	1	2215	2215		44.117	6.3053	1	1208700			2133	8740	1558	1562	3130	3130					0.052864280162452815
APRPPTAAP	9	Unmodified	_APRPPTAAP_					0	0	0		ENSG00000184939|ENST00000563169|ZFP90;nc|ENSG00000184939|Q8TF47-3|ZFP90	ENSG00000184939|ENST00000563169|ZFP90	ENSG00000184939|ENST00000563169|ZFP90	MULTI-MSMS	OvCa9_classI_Rep4_	4	439.2484130859375	2	439.248152	876.481751	-0.22416	-9.8464E-05	-0.0026512	-1.1645E-06	-0.22682	-9.9628E-05	439.24807436031745	51.881	2.0555	48.707	47.872	49.928	-3.1734					117	40	4	0	0	0	0.44568	1	3080	3080		47.657	6.8792	1	1269500			2134	8205	1559	1563	3131	3131					0.03856935445844556
APRPVDEP	8	Unmodified	_APRPVDEP_					0	0	0		MED16-POLR2E|1|fusion;nc|ENSG00000175221|Q9Y2X0-5|MED16;nc|ENSG00000175221|Q9Y2X0-4|MED16;nc|ENSG00000175221|Q9Y2X0-2|MED16;nc|ENSG00000175221|Q9Y2X0-3|MED16;ENSG00000175221|ENST00000325464|MED16	MED16-POLR2E|1|fusion	MED16-POLR2E|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep3	3	439.7947082519531	2	440.729792	879.445031	2.2449	0.00098941	-1.0252	-0.00045185	1.2197	0.00053756	440.7293834554422	112.14	0.295	111.04	110.94	111.24	-1.1038					8	5	2	0	0	0	0.028476	1	8185	8185		50.025	16.509	1	11815			2135	7527	1560	1564	3132	3132					0.000486388292756601
APRQPGLMA	9	Oxidation (M)	_APRQPGLM(Oxidation (M))A_		APRQPGLM(1)A		APRQPGLM(61)A	0	0	1		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	478.7520751953125	2	478.752744	955.490935	-1.4226	-0.0006811	1.1828	0.00056628	-0.23984	-0.00011482	478.7532346703681	50.895	2.769	48.101	47.63	50.399	-2.794					110	55	3	0	0	0	0.31747	1	3303	3303		60.972	8.0352	1	1064500			2136	2534	1561	1565	3133	3133		83			0.011409607398832122
APRQPGLMA	9	Oxidation (M)	_APRQPGLM(Oxidation (M))A_		APRQPGLM(1)A		APRQPGLM(82)A	0	0	1		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.75244140625	2	478.752744	955.490935	-0.55239	-0.00026446	-0.31881	-0.00015263	-0.87121	-0.00041709	478.75267825392433	51.072	2.719	47.898	47.464	50.183	-3.1734					136	53	4	0	0	0	0.16524	5	3002	2965;2989;3002;3041;3052		82.305	16.251	1	6347700			2137	2534	1561	1565	3134;3135;3136;3137;3138	3136		83			0.011409607398832122
APRQPGLMA	9	Unmodified	_APRQPGLMA_					0	0	0		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	470.7547912597656	2	470.755287	939.496021	-0.44874	-0.00021125	0.27695	0.00013038	-0.17179	-8.0871E-05	470.7553249090684	59.508	1.6722	56.728	56.189	57.861	-2.7801					72	31	4	0	0	0	0.36502	4	4343	4337;4343;4354;4363		55.504	18.345	1	496080			2138	2534	1561	1566	3139;3140;3141;3142	3140					0.023852646024920432
APRQPGLMA	9	Unmodified	_APRQPGLMA_					0	0	0		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.7562561035156	2	470.755287	939.496021	0.94956	0.00044701	-1.7378	-0.00081808	-0.78824	-0.00037107	470.75444912950644	60.007	1.8775	56.577	56.16	58.038	-3.43					89	37	4	0	0	0	0.19716	5	4039	4027;4039;4051;4064;4090		76.847	20.623	1	3024100			2139	2534	1561	1566	3143;3144;3145;3146;3147	3144					0.023852646024920432
APRQPGLMA	9	Unmodified	_APRQPGLMA_					0	0	0		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	470.755287	939.496021	0.15329	7.2161E-05	-3.5205	-0.0016573	-3.3673	-0.0015852	470.75313316289515	57.064	0.47582	57.064	56.788	57.264	0	0.27443	-0.0027821	NaN	76.847	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110310			2140	2534	1561	1566							0.023852646024920432
APRQPGLMAQM	11	2 Oxidation (M)	_APRQPGLM(Oxidation (M))AQM(Oxidation (M))_		APRQPGLM(1)AQM(1)		APRQPGLM(73)AQM(73)	0	0	2		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	616.2997436523438	2	616.299733	1230.58491	-0.80467	-0.00049592	0.34166	0.00021056	-0.46301	-0.00028535	616.300002893176	50.916	1.7692	47.743	47.36	49.129	-3.1734					96	34	4	0	0	0	0.25285	3	2944	2944;2956;2968		72.879	21.059	1	914240			2141	2534	1562	1567	3148;3149;3150	3148		83;84			-0.021156882201466942
APRQPGLMAQM	11	2 Oxidation (M)	_APRQPGLM(Oxidation (M))AQM(Oxidation (M))_					0	0	2		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	616.299733	1230.58491	-1.7672	-0.0010891	1.6501	0.0010169	-0.11715	-7.2199E-05	616.3006027585772	50.756	1.2862	47.962	47.63	48.916	-2.794	0.10967	0.00060233	NaN	72.879	53	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109370			2142	2534	1562	1567				83;84			-0.021156882201466942
APRQPGLMAQM	11	Oxidation (M)	_APRQPGLMAQM(Oxidation (M))_		APRQPGLMAQM(1)		APRQPGLM(-58)AQM(58)	0	0	1		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	608.303955078125	2	608.302275	1214.59	0.70384	0.00042815	-0.79027	-0.00048072	-0.086422	-5.2571E-05	608.301736603295	61.331	1.0517	57.901	57.594	58.646	-3.43					54	21	3	0	0	0	0.060105	2	4203	4193;4203		109.48	45.271	2	519120			2143	2534	1562	1568	3151;3152	3152		83;84			-0.008713843575378633
APRQPGLMAQM	11	Oxidation (M)	_APRQPGLM(Oxidation (M))AQM_		APRQPGLM(1)AQM		APRQPGLM(42)AQM(-42)	0	0	1		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	608.303955078125	2	608.302275	1214.59	-0.31213	-0.00018987	0.48923	0.0002976	0.1771	0.00010773	608.3025563171789	65.832	1.264	62.347	61.889	63.153	-3.4854					69	25	5	0	0	0	0.41398	1	4763	4763		60.118	7.1816	2	424340			2144	2534	1562	1568	3153	3153		83;84			-0.008713843575378633
APRQPGLMAQM	11	Oxidation (M)	_APRQPGLM(Oxidation (M))AQM_					0	0	1		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	608.302275	1214.59	0.14279	8.6859E-05	0.91093	0.00055412	1.0537	0.00064098	608.3026908832871	65.1	1.1751	62.376	61.917	63.092	-2.7245	-0.11667	0.0013171	NaN	60.118	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67503			2145	2534	1562	1568				83;84			-0.008713843575378633
APRQPGLMAQM	11	Oxidation (M)	_APRQPGLMAQM(Oxidation (M))_					0	0	1		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	608.302275	1214.59	-1.3936	-0.00084773	3.4588	0.002104	2.0652	0.0012562	608.3043733141511	60.751	0.89931	57.981	57.553	58.453	-2.7702	0.040225	0.004262	NaN	109.48	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54067			2146	2534	1562	1568				83;84			-0.008713843575378633
APRQPGLMAQM	11	Oxidation (M)	_APRQPGLM(Oxidation (M))AQM_					0	0	1		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	608.302275	1214.59	2.7408	0.0016673	-1.2788	-0.00077793	1.462	0.00088932	608.8029814575007	65.7	1.9816	62.754	62.198	64.18	-2.9459	0.26194	-0.001347	NaN	60.118	56	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35323			2147	2534	1562	1568				83;84			-0.008713843575378633
APRQPGLMAQM	11	Unmodified	_APRQPGLMAQM_					0	0	0		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	600.3058471679688	2	600.304818	1198.59508	0.22877	0.00013733	-0.52424	-0.0003147	-0.29547	-0.00017737	600.3043686876697	79.389	1.105	76.638	76.37	77.475	-2.7514					52	22	3	0	0	0	0.31264	2	6447	6437;6447		67.494	16.301	1	619000			2148	2534	1562	1569	3154;3155	3155					0.003729195050709677
APRQPGLMAQM	11	Unmodified	_APRQPGLMAQM_					0	0	0		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	600.304818	1198.59508	-0.49694	-0.00029832	0.62965	0.00037798	0.13271	7.9664E-05	600.304998195512	78.514	1.211	76.775	76.144	77.355	-1.7398	0.17016	0.0013331	NaN	67.494	57	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162750			2149	2534	1562	1569							0.003729195050709677
APRQPGLMAQM	11	Unmodified	_APRQPGLMAQM_					0	0	0		ENST00000473095.1_1_7:56170554-56174106:-|nuORF;nc|ENSG00000186940|Q5T1J5|CHCHD2P9;ENSG00000106153|ENST00000395422|CHCHD2	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	ENST00000473095.1_1_7:56170554-56174106:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	600.304818	1198.59508	1.7714	0.0010634	-1.6533	-0.00099248	0.11807	7.0875E-05	600.3038030633815	78.754	1.4517	76.401	75.998	77.45	-2.3527	-0.20333	-0.0014078	NaN	67.494	59	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	532580			2150	2534	1562	1569							0.003729195050709677
APRQPGPTH	9	Unmodified	_APRQPGPTH_					0	0	0			REV__nc|ENSG00000188931|Q5VTH2|CFAP126	REV__nc|ENSG00000188931|Q5VTH2|CFAP126	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.770751953125	2	480.754133	959.493713	-0.99964	-0.00048058	1.1992	0.00057654	0.19961	9.5962E-05	480.7542914275418	55.071	0.41125	51.824	51.644	52.055	-3.2474					12	7	2	0	0	0	0.027462	1	3471	3471		24.203	4.8428	1	37167	+		2151	29066	1563	1570	3156	3156					0.012345521890324562
APRRGPALL	9	Unmodified	_APRRGPALL_					0	0	0		ERCC6|p.H1035Ifs*2|1|0.37|ENSG00000225830|chr10:49470857-49470857|G/-|frameshift_variant;nc|ENSG00000225830|P0DP91|ERCC6;ERCC6|p.A1270Pfs*25|1|0.08|ENSG00000225830|chr10:49461527-49461527|C/-|frameshift_variant;ENSG00000225830|ENST00000355832|ERCC6	ERCC6|p.H1035Ifs*2|1|0.37|ENSG00000225830|chr10:49470857-49470857|G/-|frameshift_variant	ERCC6|p.H1035Ifs*2|1|0.37|ENSG00000225830|chr10:49470857-49470857|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	475.798583984375	2	475.798343	949.582134	-1.1416	-0.00054318	1.0631	0.00050583	-0.078494	-3.7347E-05	475.7987527158406	55.46	1.1933	52.646	52.022	53.215	-2.8139					74	23	4	0	0	0	0.42057	3	3844	3829;3844;3874		50.025	5.4935	1	547610			2152	9266	1564	1571	3157;3158;3159	3158					0.10532592499521343
APRRPSSLQSL	11	Unmodified	_APRRPSSLQSL_					0	0	0		nc|ENSG00000257923|P39880-6|CUX1;nc|ENSG00000257923|P39880-4|CUX1;nc|ENSG00000257923|P39880-5|CUX1;nc|ENSG00000257923|P39880-2|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1	nc|ENSG00000257923|P39880-6|CUX1	nc|ENSG00000257923|P39880-6|CUX1	MULTI-MSMS	OvCa9_classI_Rep2	2	404.5680236816406	3	404.566683	1210.67822	0.79406	0.00032125	-0.64518	-0.00026102	0.14888	6.0232E-05	404.56637749342775	57.563	1.4	54.771	54.328	55.728	-2.792					63	27	3	0	0	0	0.70032	1	4127	4127		29.551	0.38069	1	302680			2153	9476	1565	1572	3160	3160					0.08130695548948097
APRRYSSSL	9	Unmodified	_APRRYSSSL_					0	0	0		nc|ENSG00000140750|Q68EM7-3|ARHGAP17;ARHGAP17|p.S762Qfs*22|1|0.08|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17;ENST00000570320.5_1_16:24931453-24947070:-|nuORF;nc|ENSG00000140750|Q68EM7-7|ARHGAP17;ENST00000575283.5_1_16:24931453-24951019:-|nuORF	nc|ENSG00000140750|Q68EM7-3|ARHGAP17	nc|ENSG00000140750|Q68EM7-3|ARHGAP17	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.7800903320312	2	518.780348	1035.54614	-1.2287	-0.00063741	0.18854	9.781E-05	-1.0401	-0.0005396	518.7804455688876	41.702	1.5448	38.722	38.388	39.933	-2.9804					74	29	3	0	0	0	0.56889	1	1910	1910		35.618	5.1146	1	1689300			2154	106	1566	1573	3161	3161					0.029790905319941885
APRSAKPAL	9	Unmodified	_APRSAKPAL_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	OvCa9_classI_Rep2	2	455.7768859863281	2	455.777077	909.5396	0.44756	0.00020399	-0.79005	-0.00036009	-0.34249	-0.0001561	455.77664816232084	39.294	1.4879	36.584	36.31	37.798	-2.7097					84	29	4	0	0	0	0.074342	7	1905	1893;1905;1917;1923;1935;1943;1957		104.75	17.888	1	978610			2155	4140	1567	1574	3162;3163;3164;3165;3166;3167;3168	3163					0.08121197371269773
APRSAKPAL	9	Unmodified	_APRSAKPAL_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	OvCa9_classI_Rep4_	4	455.77685546875	2	455.777077	909.5396	0.0087953	4.0087E-06	-0.87875	-0.00040051	-0.86995	-0.00039651	455.7767083832948	39.55	2.1484	36.624	36.346	38.494	-2.9264					122	41	5	0	0	0	0.12515	4	1627	1627;1639;1651;1663		90.37	29.398	1	3879400			2156	4140	1567	1574	3169;3170;3171;3172	3169					0.08121197371269773
APRSAKPALL	10	Unmodified	_APRSAKPALL_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	OvCa9_classI_Rep2	2	512.3182983398438	2	512.319109	1022.62366	-1.0601	-0.00054311	0.66174	0.00033902	-0.39836	-0.00020409	512.3193628969464	54.362	1.9918	51.548	51.075	53.067	-2.8139					110	39	4	0	0	0	0.50999	2	3730	3724;3730		52.937	6.9645	1	832500			2157	4140	1568	1575	3173;3174	3174					0.11325728468182206
APRSAKPALL	10	Unmodified	_APRSAKPALL_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.3202514648438	2	512.319109	1022.62366	-1.0918	-0.00055934	0.44728	0.00022915	-0.6445	-0.00033019	512.3192622301821	54.713	1.7342	51.465	51.132	52.866	-3.2474					92	33	4	0	0	0	0.26424	2	3410	3398;3410		85.161	29.657	1	2084000			2158	4140	1568	1575	3175;3176	3176					0.11325728468182206
APRSLLLLL	9	Unmodified	_APRSLLLLL_					0	0	0		nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;HLA-F|p.D248Rfs*89|1|0.04|ENSG00000204642|chr6:29725161-29725162|-/A|frameshift_variant	nc|ENSG00000204642|P30511|HLA-F	nc|ENSG00000204642|P30511|HLA-F	MULTI-MSMS	OvCa9_classI_Rep3	3	498.33367919921875	2	498.334227	994.653902	1.2643	0.00063007	-1.8659	-0.00092985	-0.60157	-0.00029978	498.3332884380841	124.71	3.4398	123.66	123.27	126.71	-1.0519					179	65	5	0	0	0	0.3076	1	9654	9654		62.107	0	1	3929400			2159	9016	1569	1576	3177	3177					0.15636087133384535
APRTLLLLL	9	Unmodified	_APRTLLLLL_					0	0	0		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;nc|ENSG00000206341|P01893|HLA-H;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-MSMS	OvCa9_classI_Rep3	3	505.3410339355469	2	505.342052	1008.66955	-1.2256	-0.00061935	0.24452	0.00012356	-0.9811	-0.00049579	505.3419478940064	134.8	1.6252	133.68	133.41	135.03	-1.1226					106	32	5	0	0	0	0.38969	1	10942	10942		52.937	5.2794	1	959590			2160	9098	1570	1577	3178	3178					0.16556373650416845
APRTPGRHGL	10	Unmodified	_APRTPGRHGL_					0	0	0		nc|ENSG00000139132|Q96M96-3|FGD4;nc|ENSG00000139132|Q96M96|FGD4;ENSG00000139132|ENST00000534526|FGD4	nc|ENSG00000139132|Q96M96-3|FGD4	nc|ENSG00000139132|Q96M96-3|FGD4	MSMS	OvCa9_classI_Rep2	2	531.30078125	2	531.301781	1060.58901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.564	1	33.855	33.355	34.355	-2.7097								0	0	0	0.14189	1	1572	1572		34.173	1.3601	1				2161	4743	1571	1578	3179	3179					0.06113905380084361
APRTVALTAL	10	Unmodified	_APRTVALTAL_					0	0	0		ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENSG00000223865|ENST00000418931|HLA-DPB1	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	506.8116455078125	2	506.811116	1011.60768	-0.96963	-0.00049142	-0.36531	-0.00018514	-1.3349	-0.00067656	506.8110395873254	89.248	2.4224	87.118	86.702	89.124	-2.1309					173	47	5	0	0	0	0.43433	2	5470	5470;5488		63.534	8.2054	1	9108500			2162	9253	1572	1579	3180;3181	3180					0.10234022231247764
APRTVALTALL	11	Unmodified	_APRTVALTALL_					0	0	0		ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENSG00000223865|ENST00000418931|HLA-DPB1	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	563.35302734375	2	563.353148	1124.69174	-0.51442	-0.0002898	-0.73977	-0.00041675	-1.2542	-0.00070655	563.3531834496299	116.13	2.03	116.01	115.64	117.67	-0.11777					126	40	5	0	0	0	0.22834	2	11097	11097;11103		76.17	14.062	1	2302900			2163	9253	1573	1580	3182;3183	3182					0.13438553328160197
APRTVALTALL	11	Unmodified	_APRTVALTALL_					0	0	0		ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENSG00000223865|ENST00000418931|HLA-DPB1	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	563.353759765625	2	563.353148	1124.69174	-1.0854	-0.00061147	0.27756	0.00015637	-0.80785	-0.00045511	563.3535121729102	117.2	1.8826	116.17	115.84	117.73	-1.0324					63	37	2	0	0	0	0.50761	2	8838	8838;8857		53.089	4.244	1	2467900			2164	9253	1573	1580	3184;3185	3184					0.13438553328160197
APRTVALTALL	11	Unmodified	_APRTVALTALL_					0	0	0		ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENSG00000223865|ENST00000418931|HLA-DPB1	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	ENST00000469120.1_1_6:33043797-33048717:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.3521728515625	2	563.353148	1124.69174	0.72344	0.00040755	-1.5701	-0.00088453	-0.84668	-0.00047698	563.3523799001858	117.47	3.3994	116.13	115.53	118.93	-1.3452					169	64	5	0	0	0	0.52474	1	11019	11019		51.528	2.0862	1	2980000			2165	9253	1573	1580	3186	3186					0.13438553328160197
APRTVLLLL	9	Unmodified	_APRTVLLLL_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3353271484375	2	498.334227	994.653902	1.2643	0.00063007	-1.8659	-0.00092985	-0.60157	-0.00029978	498.3332884380841	124.71	3.4398	123.66	123.27	126.71	-1.0519					179	65	5	0	0	0	0.46356	1	9637	9637		45.972	0	1	3929400			2166	9301	1574	1581	3187	3187					0.15636087133384535
APRTVLLLLSA	11	Unmodified	_APRTVLLLLSA_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep2	2	577.3682250976562	2	577.368798	1152.72304	-0.0015386	-8.8833E-07	-0.31024	-0.00017912	-0.31177	-0.00018001	577.368591979319	125.62	1.9266	125.38	125.01	126.94	-0.2359					114	38	5	0	0	0	0.31995	2	12237	12223;12237		66.962	12.24	1	983740			2167	9301	1575	1582	3188;3189	3189					0.15279126362293027
APRTVLLLLSA	11	Unmodified	_APRTVLLLLSA_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep3	3	577.3677978515625	2	577.368798	1152.72304	0.41999	0.00024249	-0.64357	-0.00037158	-0.22358	-0.00012909	577.3683674642078	126.91	1.704	125.83	125.44	127.14	-1.0715					108	32	5	0	0	0	0.66495	2	9922	9922;9961		38.754	3.3356	1	1015500			2168	9301	1575	1582	3190;3191	3190					0.15279126362293027
APRTVLLLLSA	11	Unmodified	_APRTVLLLLSA_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep4_	4	577.367919921875	2	577.368798	1152.72304	-1.6942	-0.00097816	1.3228	0.00076377	-0.37133	-0.00021439	577.3694914290571	127.2	2.4686	125.77	125.44	127.91	-1.4357					130	48	5	0	0	0	0.50761	1	12142	12142		53.089	6.6322	1	1097800			2169	9301	1575	1582	3192	3192					0.15279126362293027
APRVLQQTL	9	Unmodified	_APRVLQQTL_					0	0	0		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	OvCa9_classI_Rep3	3	513.3079223632812	2	513.308741	1024.60293	-0.62059	-0.00031855	0.45292	0.00023249	-0.16767	-8.6064E-05	513.3090013877434	77.124	2.0931	74.753	74.191	76.284	-2.3715					86	40	5	0	0	0	0.13504	2	4034	4022;4034		87.696	18.91	1	953400			2170	9068	1576	1583	3193;3194	3194					0.09161138088529697
APRVLQQTL	9	Unmodified	_APRVLQQTL_					0	0	0		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.3097534179688	2	513.308741	1024.60293	-0.20579	-0.00010563	-0.26732	-0.00013722	-0.4731	-0.00024285	513.3086432652412	77.976	1.4803	75.159	74.729	76.209	-2.8165					67	29	4	0	0	0	0.074342	1	6261	6261		104.75	10.74	1	786910			2171	9068	1576	1583	3195	3195					0.09161138088529697
APRVMQPDAI	10	Unmodified	_APRVMQPDAI_					0	0	0			REV__tr|A0A7D7A6J7|A0A7D7A6J7_9CLOTSignalrecognitionparticlereceptorFtsYOS=ClostridiumintestinaleOX=36845GN=ftsYPE=3SV=1	REV__tr|A0A7D7A6J7|A0A7D7A6J7_9CLOTSignalrecognitionparticlereceptorFtsYOS=ClostridiumintestinaleOX=36845GN=ftsYPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	549.291259765625	2	549.292233	1096.56991	-0.44719	-0.00024564	-2.9183	-0.001603	-3.3655	-0.0018487	549.2905935733277	68.893	1.9973	66.272	65.869	67.866	-2.6203					69	39	2	0	0	0	0.47142	1	5455	5455		58.23	4.8785	1	809470	+		2172	32660	1577	1584	3196	3196					0.025491879741593948
APRVPVQAL	9	Unmodified	_APRVPVQAL_					0	0	0		ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17	ENST00000514252.1_1_4:73978989-74017230:-|nuORF	ENST00000514252.1_1_4:73978989-74017230:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	475.7923889160156	2	475.792727	949.5709	0.19623	9.3363E-05	-0.70421	-0.00033506	-0.50798	-0.00024169	475.79233840431397	80.375	1.3968	78.68	78.222	79.619	-1.6951					115	27	6	0	0	0	0.22961	4	6779	6767;6773;6779;6786		71.296	15.791	1	1033700			2173	4139	1578	1585	3197;3198;3199;3200	3199					0.09409770405375184
APRVPVQAL	9	Unmodified	_APRVPVQAL_					0	0	0		ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17	ENST00000514252.1_1_4:73978989-74017230:-|nuORF	ENST00000514252.1_1_4:73978989-74017230:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	475.7936706542969	2	475.792727	949.5709	0.67344	0.00032042	-1.0533	-0.00050117	-0.37989	-0.00018075	475.7921346062056	80.784	1.9819	78.462	78.081	80.062	-2.3226					116	38	6	0	0	0	0.13482	6	4458	4440;4445;4451;4458;4471;4484		87.754	27.46	1	2495500			2174	4139	1578	1585	3201;3202;3203;3204;3205;3206	3204					0.09409770405375184
APSAAKLLVQL	11	Unmodified	_APSAAKLLVQL_					0	0	0		ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.8464965820312	2	555.847699	1109.68084	0.91791	0.00051022	-1.8035	-0.0010024	-0.88555	-0.00049223	555.846858196113	111.47	1.9842	109.96	109.21	111.2	-1.5111					65	37	3	0	0	0	0.14191	1	10278	10278		88.177	21.748	1	144940			2175	2336	1579	1586	3207	3207					0.13039150953886747
APSAAKLLVQL	11	Unmodified	_APSAAKLLVQL_					0	0	0		ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	555.847699	1109.68084	0.74316	0.00041308	-1.5414	-0.00085679	-0.79825	-0.0004437	555.8469751367409	110.04	1.3846	109.87	109.56	110.95	-0.17236	-0.056756	2.0127E-05	NaN	88.177	50	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107410			2176	2336	1579	1586							0.13039150953886747
APSAAKLLVQL	11	Unmodified	_APSAAKLLVQL_					0	0	0		ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	555.847699	1109.68084	0.54766	0.00030441	-1.3863	-0.0007706	-0.83869	-0.00046618	555.8470140250929	111.05	1.5033	109.94	109.44	110.94	-1.1038	0.020866	0.00019251	NaN	88.177	45	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116300			2177	2336	1579	1586							0.13039150953886747
APSDLRTIQTF	11	Unmodified	_APSDLRTIQTF_					0	0	0		nc|ENSG00000040633|Q9BUL5-2|PHF23;nc|ENSG00000040633|Q9BUL5-4|PHF23;ENSG00000040633|ENST00000320316|PHF23	nc|ENSG00000040633|Q9BUL5-2|PHF23	nc|ENSG00000040633|Q9BUL5-2|PHF23	MULTI-MSMS	OvCa9_classI_Rep2	2	624.832763671875	2	624.832777	1247.651	-0.54937	-0.00034327	0.70521	0.00044064	0.15583	9.7369E-05	624.8331403938798	92.883	1.8991	91.715	91.394	93.293	-1.168					117	36	5	0	0	0	0.4397	1	8347	8347		58.246	10.287	1	828600			2178	1114	1580	1587	3208	3208					0.03708167217882874
APSDLRTIQTF	11	Unmodified	_APSDLRTIQTF_					0	0	0		nc|ENSG00000040633|Q9BUL5-2|PHF23;nc|ENSG00000040633|Q9BUL5-4|PHF23;ENSG00000040633|ENST00000320316|PHF23	nc|ENSG00000040633|Q9BUL5-2|PHF23	nc|ENSG00000040633|Q9BUL5-2|PHF23	MULTI-MSMS	OvCa9_classI_Rep3	3	624.8342895507812	2	624.832777	1247.651	-0.22894	-0.00014305	0.12143	7.5875E-05	-0.10751	-6.7177E-05	624.832799150308	93.664	2.1214	91.702	91.378	93.499	-1.9617					124	41	5	0	0	0	0.12738	2	6072	6072;6080		91.265	27.731	1	1089200			2179	1114	1580	1587	3209;3210	3209					0.03708167217882874
APSDLRTIQTF	11	Unmodified	_APSDLRTIQTF_					0	0	0		nc|ENSG00000040633|Q9BUL5-2|PHF23;nc|ENSG00000040633|Q9BUL5-4|PHF23;ENSG00000040633|ENST00000320316|PHF23	nc|ENSG00000040633|Q9BUL5-2|PHF23	nc|ENSG00000040633|Q9BUL5-2|PHF23	MULTI-MSMS	OvCa9_classI_Rep4_	4	624.8345336914062	2	624.832777	1247.651	-0.33712	-0.00021064	0.23328	0.00014576	-0.10384	-6.4883E-05	624.8328150193545	94.259	1.9876	91.79	91.478	93.465	-2.4685					116	39	4	0	0	0	0.21819	1	8313	8313		77.533	33.156	1	870350			2180	1114	1580	1587	3211	3211					0.03708167217882874
APSDNRVTSF	10	Unmodified	_APSDNRVTSF_					0	0	0		NSFL1C-EPSTI1|2|fusion;NSFL1C-EPSTI1|1|fusion;ENST00000487086.1_1_20:1438843-1447469:-|nuORF;nc|ENSG00000088833|Q9UNZ2-4|NSFL1C;ENSG00000088833|ENST00000216879|NSFL1C;nc|ENSG00000088833|Q9UNZ2-5|NSFL1C	NSFL1C-EPSTI1|2|fusion	NSFL1C-EPSTI1|2|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.267822265625	2	547.26727	1092.51999	-0.29715	-0.00016262	0.13859	7.5845E-05	-0.15857	-8.6779E-05	547.2672731735502	64.089	1.2646	60.614	60.298	61.562	-3.475					55	25	4	0	0	0	0.11648	1	4545	4545		109.44	33.269	1	882180			2181	15440	1581	1588	3212	3212					-0.022572234301378558
APSEYRYTLL	10	Unmodified	_APSEYRYTLL_					0	0	0		ENSG00000023318|ENST00000262455|ERP44;TMEFF1-ERP44|1|fusion	ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	MULTI-MSMS	OvCa9_classI_Rep2	2	606.8159790039062	2	606.816596	1211.61864	-0.38667	-0.00023464	-0.020769	-1.2603E-05	-0.40744	-0.00024724	606.8164499837156	95.893	1.8298	94.865	94.169	95.999	-1.0281					107	36	6	0	0	0	0.38633	6	8628	8628;8631;8638;8645;8650;8659		70.399	24.447	1	906240			2182	1038	1582	1589	3213;3214;3215;3216;3217;3218	3213					0.02129379814891763
APSEYRYTLL	10	Unmodified	_APSEYRYTLL_					0	0	0		ENSG00000023318|ENST00000262455|ERP44;TMEFF1-ERP44|1|fusion	ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	MSMS	OvCa9_classI_Rep3	3	606.8174438476562	2	606.816596	1211.61864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.751	1	94.922	94.422	95.422	-1.8286								0	0	0	0.12657	1	6376	6376		58.246	8.8047	1				2183	1038	1582	1589	3219	3219					0.02129379814891763
APSEYRYTLL	10	Unmodified	_APSEYRYTLL_					0	0	0		ENSG00000023318|ENST00000262455|ERP44;TMEFF1-ERP44|1|fusion	ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	MSMS	OvCa9_classI_Rep3	3	606.8179931640625	2	606.816596	1211.61864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.803	1	94.975	94.475	95.475	-1.8286								0	0	0	0.085576	1	6382	6382		76.17	9.7404	1				2184	1038	1582	1589	3220	3220					0.02129379814891763
APSEYRYTLL	10	Unmodified	_APSEYRYTLL_					0	0	0		ENSG00000023318|ENST00000262455|ERP44;TMEFF1-ERP44|1|fusion	ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	MSMS	OvCa9_classI_Rep3	3	606.817626953125	2	606.816596	1211.61864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.855	1	95.027	94.527	95.527	-1.8286								0	0	0	0.086867	1	6388	6388		83.647	28.925	1				2185	1038	1582	1589	3221	3221					0.02129379814891763
APSEYRYTLL	10	Unmodified	_APSEYRYTLL_					0	0	0		ENSG00000023318|ENST00000262455|ERP44;TMEFF1-ERP44|1|fusion	ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	MSMS	OvCa9_classI_Rep3	3	606.8173828125	2	606.816596	1211.61864	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.921	1	95.093	94.593	95.593	-1.8286								0	0	0	0.12246	1	6396	6396		59.931	20.678	1				2186	1038	1582	1589	3222	3222					0.02129379814891763
APSEYRYTLL	10	Unmodified	_APSEYRYTLL_					0	0	0		ENSG00000023318|ENST00000262455|ERP44;TMEFF1-ERP44|1|fusion	ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.8172607421875	2	606.816596	1211.61864	1.4365	0.00087168	-1.7555	-0.0010653	-0.31902	-0.00019359	606.8153601007599	97.372	1.9587	94.993	94.114	96.072	-2.3786					97	37	5	0	0	0	0.27679	3	8630	8608;8618;8630		83.647	39.08	1	1168400			2187	1038	1582	1589	3223;3224;3225	3225					0.02129379814891763
APSGTRVVQVL	11	Unmodified	_APSGTRVVQVL_					0	0	0		nc|ENSG00000240184|Q9UN70-2|PCDHGC3;ENSG00000240184|ENST00000308177|PCDHGC3	nc|ENSG00000240184|Q9UN70-2|PCDHGC3	nc|ENSG00000240184|Q9UN70-2|PCDHGC3	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.83349609375	2	563.83258	1125.65061	0.49822	0.00028091	-1.1255	-0.0006346	-0.62729	-0.00035369	563.8318552434883	81.704	1.1631	79.021	78.718	79.881	-2.683					43	23	2	0	0	0	0.48315	1	6730	6730		55.084	3.8912	1	451380			2188	9336	1583	1590	3226	3226					0.09280792288700468
APSGTRVVQVL	11	Unmodified	_APSGTRVVQVL_					0	0	0		nc|ENSG00000240184|Q9UN70-2|PCDHGC3;ENSG00000240184|ENST00000308177|PCDHGC3	nc|ENSG00000240184|Q9UN70-2|PCDHGC3	nc|ENSG00000240184|Q9UN70-2|PCDHGC3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	563.83258	1125.65061	0.62158	0.00035047	-1.1829	-0.00066694	-0.56128	-0.00031647	563.8318483011436	80.768	1.3601	79.072	78.668	80.029	-1.6951	-0.0301	-0.00076925	NaN	55.084	50	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207300			2189	9336	1583	1590							0.09280792288700468
APSGTRVVQVL	11	Unmodified	_APSGTRVVQVL_					0	0	0		nc|ENSG00000240184|Q9UN70-2|PCDHGC3;ENSG00000240184|ENST00000308177|PCDHGC3	nc|ENSG00000240184|Q9UN70-2|PCDHGC3	nc|ENSG00000240184|Q9UN70-2|PCDHGC3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	563.83258	1125.65061	-0.78887	-0.00044479	0.33627	0.0001896	-0.4526	-0.00025519	563.8326825430579	81.537	1.31	79.214	78.802	80.112	-2.3226	0.11144	0.00094382	NaN	55.084	46	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	450740			2190	9336	1583	1590							0.09280792288700468
APSKLIRD	8	Unmodified	_APSKLIRD_					0	0	0			REV__ENSG00000134440|ENST00000256854|NARS1	REV__ENSG00000134440|ENST00000256854|NARS1	MULTI-MSMS	OvCa9_classI_Rep3	3	450.2693176269531	2	450.269084	898.523616	1.9084	0.0008593	-1.9638	-0.00088423	-0.055366	-2.4929E-05	450.26807810544716	61.38	1.5642	58.311	57.573	59.137	-3.0685					65	43	2	0	0	0	0.75241	1	2146	2146		25.45	3.7478	1	26008	+		2191	19202	1584	1591	3227	3227					0.07029491134369437
APSKPAASI	9	Unmodified	_APSKPAASI_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	OvCa9_classI_Rep4_	4	421.24310302734375	2	421.242535	840.470518	-2.2911	-0.00096509	2.3729	0.00099956	0.081823	3.4467E-05	421.2433383509834	49.169	1.3005	46.028	45.519	46.82	-3.1416					51	24	3	0	0	0	0.16264	1	2765	2765		82.75	3.2995	1	235350			2192	5663	1585	1592	3228	3228					0.04390113351701075
APSKPAASI	9	Unmodified	_APSKPAASI_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	421.242535	840.470518	-0.62556	-0.00026351	0.93772	0.00039501	0.31216	0.0001315	421.2428262058055	48.863	0.94018	46.103	45.879	46.819	-2.7603	0.037638	-0.00049909	NaN	82.75	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43250			2193	5663	1585	1592							0.04390113351701075
APSKSRLLAT	10	Unmodified	_APSKSRLLAT_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B;ENST00000468936.5_1_6:31999682-32002424:+|nuORF;ENST00000468237.5_1_6:32001530-32003051:+|nuORF;ENST00000496560.1_1_6:32001776-32002287:+|nuORF	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.315673828125	2	522.314023	1042.61349	-0.33019	-0.00017246	-0.55482	-0.00028979	-0.88501	-0.00046225	522.3136680112216	47.464	1.7319	44.356	44.082	45.814	-3.1077					75	33	4	0	0	0	0.31125	3	2549	2549;2560;2573		79.489	33.537	1	892160			2194	9254	1586	1593	3229;3230;3231	3229					0.09389120742957857
APSKSRLLATL	11	Unmodified	_APSKSRLLATL_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B;ENST00000468936.5_1_6:31999682-32002424:+|nuORF;ENST00000468237.5_1_6:32001530-32003051:+|nuORF;ENST00000496560.1_1_6:32001776-32002287:+|nuORF	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	OvCa9_classI_Rep2	2	578.8551025390625	2	578.856055	1155.69756	-0.84651	-0.00049001	0.0012217	7.0721E-07	-0.84529	-0.0004893	578.8561226777916	73.718	2.091	71.318	71.001	73.092	-2.3999					135	39	5	0	0	0	0.043701	15	5997	5994;5997;6003;6009;6015;6021;6027;6033;6040;6046;6052;6058;6065;6072;6079		139.38	89.941	1	3606600			2195	9254	1587	1594	3232;3233;3234;3235;3236;3237;3238;3239;3240;3241;3242;3243;3244;3245;3246	3233					0.1259365183987029
APSKSRLLATL	11	Unmodified	_APSKSRLLATL_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B;ENST00000468936.5_1_6:31999682-32002424:+|nuORF;ENST00000468237.5_1_6:32001530-32003051:+|nuORF;ENST00000496560.1_1_6:32001776-32002287:+|nuORF	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	OvCa9_classI_Rep3	3	578.8560791015625	2	578.856055	1155.69756	-1.1463	-0.00066353	0.080693	4.671E-05	-1.0656	-0.00061682	578.8561692543319	73.869	2.1763	71.382	71.074	73.251	-2.4873					171	43	6	0	0	0	0.0086711	16	3635	3611;3617;3623;3629;3635;3641;3647;3653;3659;3665;3673;3679;3686;3692;3698;3705		162.64	102.71	1	5667900			2196	9254	1587	1594	3247;3248;3249;3250;3251;3252;3253;3254;3255;3256;3257;3258;3259;3260;3261;3262	3251					0.1259365183987029
APSKSRLLATL	11	Unmodified	_APSKSRLLATL_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B;ENST00000468936.5_1_6:31999682-32002424:+|nuORF;ENST00000468237.5_1_6:32001530-32003051:+|nuORF;ENST00000496560.1_1_6:32001776-32002287:+|nuORF	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.857421875	2	578.856055	1155.69756	-0.59008	-0.00034157	-0.53224	-0.00030809	-1.1223	-0.00064966	578.8557582849621	75.032	1.963	71.801	71.483	73.446	-3.2308					136	40	5	0	0	0	0.015303	8	5918	5872;5882;5894;5906;5918;5930;5942;5957		157.34	99.115	1	5264300			2197	9254	1587	1594	3263;3264;3265;3266;3267;3268;3269;3270	3267					0.1259365183987029
APSKTSLIM	9	Oxidation (M)	_APSKTSLIM(Oxidation (M))_		APSKTSLIM(1)		APSKTSLIM(80)	0	0	1		nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-3|FOXP1;nc|ENSG00000285708|Q9H334-7|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1;nc|ENSG00000285708|Q9H334-8|FOXP1	nc|ENSG00000285708|Q9H334-6|FOXP1	nc|ENSG00000285708|Q9H334-6|FOXP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.26318359375	2	482.26261	962.510668	-0.074467	-3.5913E-05	-1.3035	-0.00062865	-1.378	-0.00066456	482.2617678287383	57.406	1.2207	54.061	53.628	54.849	-3.3449					47	23	4	0	0	0	0.1804	2	3727	3727;3739		79.713	10.926	1	1149300			2198	3047	1588	1595	3271;3272	3271		99			0.027912919599771158
APSKTSLIM	9	Unmodified	_APSKTSLIM_					0	0	0		nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-3|FOXP1;nc|ENSG00000285708|Q9H334-7|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1;nc|ENSG00000285708|Q9H334-8|FOXP1	nc|ENSG00000285708|Q9H334-6|FOXP1	nc|ENSG00000285708|Q9H334-6|FOXP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.26611328125	2	474.265153	946.515753	-0.67318	-0.00031927	-0.063803	-3.0259E-05	-0.73698	-0.00034953	474.26492330135903	72.48	1.1171	69.084	68.716	69.833	-3.3961					60	22	4	0	0	0	0.13482	1	5584	5584		87.754	26.782	1	452920			2199	3047	1588	1596	3273	3273					0.04035595822585947
APSKTSLIM	9	Unmodified	_APSKTSLIM_					0	0	0		nc|ENSG00000285708|Q9H334-6|FOXP1;nc|ENSG00000285708|Q9H334-3|FOXP1;nc|ENSG00000285708|Q9H334-7|FOXP1;ENSG00000114861|ENST00000649528|FOXP1;nc|ENSG00000285708|Q9H334-4|FOXP1;nc|ENSG00000285708|Q9H334-8|FOXP1	nc|ENSG00000285708|Q9H334-6|FOXP1	nc|ENSG00000285708|Q9H334-6|FOXP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	474.265153	946.515753	0.41599	0.00019729	-0.30724	-0.00014571	0.10875	5.1577E-05	474.2648841480645	71.507	1.7157	69	67.979	69.695	-2.5072	-0.042003	-0.0001259	NaN	87.754	63	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120570			2200	3047	1588	1596							0.04035595822585947
APSLFHLNTL	10	Unmodified	_APSLFHLNTL_					0	0	0		nc|ENSG00000164741|Q96QB1-4|DLC1;nc|ENSG00000164741|Q96QB1-1|DLC1;nc|ENSG00000164741|Q96QB1-6|DLC1;ENSG00000164741|ENST00000276297|DLC1	nc|ENSG00000164741|Q96QB1-4|DLC1	nc|ENSG00000164741|Q96QB1-4|DLC1	MULTI-MSMS	OvCa9_classI_Rep2	2	556.8092041015625	2	556.808574	1111.60259	-0.2613	-0.0001455	0.061202	3.4078E-05	-0.2001	-0.00011142	556.808497261841	116.33	1.4847	116.2	115.78	117.26	-0.12869					79	29	4	0	0	0	0.0017528	7	11123	11111;11117;11123;11129;11135;11142;11149		172.25	81.879	1	451560			2201	6481	1589	1597	3274;3275;3276;3277;3278;3279;3280	3276					0.051257183686630015
APSLFHLNTL	10	Unmodified	_APSLFHLNTL_					0	0	0		nc|ENSG00000164741|Q96QB1-4|DLC1;nc|ENSG00000164741|Q96QB1-1|DLC1;nc|ENSG00000164741|Q96QB1-6|DLC1;ENSG00000164741|ENST00000276297|DLC1	nc|ENSG00000164741|Q96QB1-4|DLC1	nc|ENSG00000164741|Q96QB1-4|DLC1	MULTI-MSMS	OvCa9_classI_Rep3	3	556.8080444335938	2	556.808574	1111.60259	-1.2557	-0.00069916	1.0009	0.00055734	-0.25472	-0.00014183	556.8090477096193	117.3	1.4356	116.26	115.8	117.23	-1.0324					80	28	4	0	0	0	2.8494E-05	6	8796	8791;8796;8802;8808;8814;8822		185.72	116.09	1	478050			2202	6481	1589	1597	3281;3282;3283;3284;3285;3286	3282					0.051257183686630015
APSLFHLNTL	10	Unmodified	_APSLFHLNTL_					0	0	0		nc|ENSG00000164741|Q96QB1-4|DLC1;nc|ENSG00000164741|Q96QB1-1|DLC1;nc|ENSG00000164741|Q96QB1-6|DLC1;ENSG00000164741|ENST00000276297|DLC1	nc|ENSG00000164741|Q96QB1-4|DLC1	nc|ENSG00000164741|Q96QB1-4|DLC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	556.808349609375	2	556.808574	1111.60259	-0.046837	-2.6079E-05	-0.28953	-0.00016121	-0.33637	-0.00018729	556.8083612447505	117.58	1.7322	116.23	115.79	117.52	-1.3444					90	32	4	0	0	0	3.6442E-07	5	11001	10989;11001;11013;11026;11039		209.19	116.05	1	615510			2203	6481	1589	1597	3287;3288;3289;3290;3291	3288					0.051257183686630015
APSLSPPAPE	10	Unmodified	_APSLSPPAPE_					0	0	0			REV__ENSG00000152284|ENST00000282111|TCF7L1	REV__ENSG00000152284|ENST00000282111|TCF7L1	MULTI-SECPEP	OvCa9_classI_Rep2	2	483.826416015625	2	483.250557	964.486562	-0.33146	-0.00016018	0.026621	1.2865E-05	-0.30483	-0.00014731	483.25073296413166	73.336	0.47149	70.936	70.74	71.211	-2.3999					12	8	2	0	0	0	0.027021	1	5947	5947		10.265	0	1	17832	+		2204	20279	1590	1598	3292	3292					0.002897747979432097
APSPRPLSL	9	Unmodified	_APSPRPLSL_					0	0	0		nc|ENSG00000161091|Q6NUT3-2|MFSD12;nc|ENSG00000161091|Q6NUT3-4|MFSD12;ENSG00000161091|ENST00000355415|MFSD12;nc|ENSG00000161091|Q6NUT3-3|MFSD12	nc|ENSG00000161091|Q6NUT3-2|MFSD12	nc|ENSG00000161091|Q6NUT3-2|MFSD12	MULTI-MSMS	OvCa9_classI_Rep2	2	469.2770080566406	2	469.276909	936.539266	-0.4249	-0.0001994	-0.14169	-6.6494E-05	-0.5666	-0.00026589	469.27692867102115	77.572	2.2545	75.782	74.793	77.047	-1.7894					108	43	4	0	0	0	0.084918	7	6445	6439;6445;6451;6456;6462;6468;6475		101.25	13.556	1	946540			2205	6120	1591	1599	3293;3294;3295;3296;3297;3298;3299	3294					0.06845777651415119
APSPRPLSL	9	Unmodified	_APSPRPLSL_					0	0	0		nc|ENSG00000161091|Q6NUT3-2|MFSD12;nc|ENSG00000161091|Q6NUT3-4|MFSD12;ENSG00000161091|ENST00000355415|MFSD12;nc|ENSG00000161091|Q6NUT3-3|MFSD12	nc|ENSG00000161091|Q6NUT3-2|MFSD12	nc|ENSG00000161091|Q6NUT3-2|MFSD12	MULTI-MSMS	OvCa9_classI_Rep3	3	469.2769775390625	2	469.276909	936.539266	-0.46704	-0.00021917	-0.73993	-0.00034723	-1.207	-0.00056641	469.2768656903328	77.631	1.7068	75.279	74.89	76.597	-2.3527					79	33	4	0	0	0	0.2077	2	4067	4063;4067		75.043	5.4157	1	2282400			2206	6120	1591	1599	3300;3301	3301					0.06845777651415119
APSPRPLSL	9	Unmodified	_APSPRPLSL_					0	0	0		nc|ENSG00000161091|Q6NUT3-2|MFSD12;nc|ENSG00000161091|Q6NUT3-4|MFSD12;ENSG00000161091|ENST00000355415|MFSD12;nc|ENSG00000161091|Q6NUT3-3|MFSD12	nc|ENSG00000161091|Q6NUT3-2|MFSD12	nc|ENSG00000161091|Q6NUT3-2|MFSD12	MULTI-MSMS	OvCa9_classI_Rep4_	4	469.2771911621094	2	469.276909	936.539266	0.46832	0.00021977	-1.284	-0.00060257	-0.81573	-0.0003828	469.2763681406432	78.492	4.4348	75.676	75.067	79.502	-2.8165					151	91	3	0	0	0	0.060996	3	6321	6321;6333;6346		112.41	13.782	1	2728100			2207	6120	1591	1599	3302;3303;3304	3302					0.06845777651415119
APSPVRATA	9	Unmodified	_APSPVRATA_					0	0	0			REV__ENST00000369214.2_1_6:100062108-100062660:+|nuORF	REV__ENST00000369214.2_1_6:100062108-100062660:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	435.2467346191406	2	435.245609	868.476666	-0.58655	-0.00025529	0.9078	0.00039512	0.32125	0.00013982	435.2459349866964	44.17	1.4738	41.163	40.891	42.365	-3.0074					76	28	4	0	0	0	0.21231	1	2175	2175		74.255	2.3776	1	1830900	+		2208	24934	1592	1600	3305	3305					0.037166315832337204
APSRNGMVL	9	Oxidation (M)	_APSRNGM(Oxidation (M))VL_		APSRNGM(1)VL		APSRNGM(46)VL	0	0	1		ENST00000565571.5_1_16:89627367-89628201:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;nc|ENSG00000167526|P26373-2|RPL13;ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000491523.5_1_16:89627367-89627472:+|nuORF	ENST00000565571.5_1_16:89627367-89628201:+|nuORF	ENST00000565571.5_1_16:89627367-89628201:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	480.7496337890625	2	480.750201	959.48585	-1.0394	-0.00049969	1.0339	0.00049703	-0.0055168	-2.6522E-06	480.7505959208067	48.711	0.59871	45.951	45.578	46.177	-2.7603					36	11	4	0	0	0	0.46356	1	3064	3064		45.972	8.9438	1	554530			2209	6798	1593	1601	3306	3306		208			0.00448656877256326
APSRNGMVL	9	Oxidation (M)	_APSRNGM(Oxidation (M))VL_		APSRNGM(1)VL		APSRNGM(58)VL	0	0	1		ENST00000565571.5_1_16:89627367-89628201:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;nc|ENSG00000167526|P26373-2|RPL13;ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000491523.5_1_16:89627367-89627472:+|nuORF	ENST00000565571.5_1_16:89627367-89628201:+|nuORF	ENST00000565571.5_1_16:89627367-89628201:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	480.7496643066406	2	480.750201	959.48585	-1.1714	-0.00056314	1.0292	0.00049478	-0.14219	-6.8356E-05	480.7505752304628	49.16	2.6747	46.399	46.127	48.802	-2.7603					122	53	4	0	0	0	0.34132	3	3108	3088;3108;3114		58.23	10.462	1	594120			2210	6798	1593	1601	3307;3308;3309	3308		208			0.00448656877256326
APSRNGMVL	9	Oxidation (M)	_APSRNGM(Oxidation (M))VL_		APSRNGM(1)VL		APSRNGM(70)VL	0	0	1		ENST00000565571.5_1_16:89627367-89628201:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;nc|ENSG00000167526|P26373-2|RPL13;ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000491523.5_1_16:89627367-89627472:+|nuORF	ENST00000565571.5_1_16:89627367-89628201:+|nuORF	ENST00000565571.5_1_16:89627367-89628201:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.75079345703125	2	480.750201	959.48585	-1.3934	-0.00066986	1.2913	0.00062079	-0.10207	-4.9072E-05	480.7509707644904	48.927	0.57302	45.819	45.451	46.024	-3.1077					34	10	4	0	0	0	0.2422	1	2743	2743		69.628	14.123	1	2706600			2211	6798	1593	1601	3310	3310		208			0.00448656877256326
APSRNGMVL	9	Oxidation (M)	_APSRNGM(Oxidation (M))VL_		APSRNGM(1)VL		APSRNGM(120)VL	0	0	1		ENST00000565571.5_1_16:89627367-89628201:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;nc|ENSG00000167526|P26373-2|RPL13;ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000491523.5_1_16:89627367-89627472:+|nuORF	ENST00000565571.5_1_16:89627367-89628201:+|nuORF	ENST00000565571.5_1_16:89627367-89628201:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.7515563964844	2	480.750201	959.48585	-2.0604	-0.00099055	1.2662	0.00060872	-0.79423	-0.00038183	480.7508123397447	49.386	2.9185	46.245	45.99	48.908	-3.1416					151	56	4	0	0	0	0.045281	3	2803	2779;2803;2828		122.18	50.299	1	3063100			2212	6798	1593	1601	3311;3312;3313	3312		208			0.00448656877256326
APSRNGMVL	9	Unmodified	_APSRNGMVL_					0	0	0		ENST00000565571.5_1_16:89627367-89628201:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;nc|ENSG00000167526|P26373-2|RPL13;ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000491523.5_1_16:89627367-89627472:+|nuORF	ENST00000565571.5_1_16:89627367-89628201:+|nuORF	ENST00000565571.5_1_16:89627367-89628201:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	472.7512512207031	2	472.752744	943.490935	-0.97149	-0.00045927	1.4188	0.00067072	0.44726	0.00021145	472.7533157758618	63.829	1.474	61.084	60.739	62.213	-2.7444					72	27	3	0	0	0	0.49652	1	4866	4866		42.864	3.6114	1	801380			2213	6798	1593	1602	3314	3314					0.016929607398765256
APSRNGMVL	9	Unmodified	_APSRNGMVL_					0	0	0		ENST00000565571.5_1_16:89627367-89628201:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;nc|ENSG00000167526|P26373-2|RPL13;ENST00000484610.5_1_16:89627367-89627911:+|nuORF;ENST00000491523.5_1_16:89627367-89627472:+|nuORF	ENST00000565571.5_1_16:89627367-89628201:+|nuORF	ENST00000565571.5_1_16:89627367-89628201:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.7542419433594	2	472.752744	943.490935	1.0184	0.00048145	-0.80801	-0.00038199	0.21039	9.9461E-05	472.75234742263694	64.577	1.9384	61.091	60.24	62.179	-3.4854					97	39	4	0	0	0	0.22621	1	4609	4609		71.877	3.0906	1	3821600			2214	6798	1593	1602	3315	3315					0.016929607398765256
APSVKQKPR	9	Unmodified	_APSVKQKPR_					0	0	0			REV__ENST00000464728.5_1_16:841010-841472:+|nuORF	REV__ENST00000464728.5_1_16:841010-841472:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	505.80877685546875	2	505.808908	1009.60326	-0.53174	-0.00026896	-0.036462	-1.8443E-05	-0.5682	-0.0002874	505.8088540702735	73.091	1.7346	70.604	70.183	71.917	-2.4873					60	34	2	0	0	0	0.56889	1	3530	3530		35.618	7.736	1	714830	+		2215	26155	1594	1603	3316	3316					0.098845578083683
APTEEPLLA	9	Unmodified	_APTEEPLLA_					0	0	0			REV__nc|ENSG00000140326|Q8IWY9-1|CDAN1	REV__nc|ENSG00000140326|Q8IWY9-1|CDAN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.7561950683594	2	470.752933	939.491313	0.94956	0.00044701	3.2629	0.001536	4.2125	0.001983	470.75444912950644	60.007	1.8775	56.577	56.16	58.038	-3.43					89	37	4	0	0	0	0.36502	1	4077	4077		55.504	4.1688	1	3024100	+		2216	19663	1595	1604	3317	3317					0.019146589407114334
APTLRLVNL	9	Unmodified	_APTLRLVNL_					0	0	0		nc|ENSG00000185615|Q13087-2|PDIA2;ENSG00000185615|ENST00000219406|PDIA2	nc|ENSG00000185615|Q13087-2|PDIA2	nc|ENSG00000185615|Q13087-2|PDIA2	MULTI-MSMS	OvCa9_classI_Rep2	2	498.8134765625	2	498.813659	995.612765	-0.18357	-9.1566E-05	0.030199	1.5064E-05	-0.15337	-7.6502E-05	498.8134984293313	106.91	1.9144	106.6	106.27	108.19	-0.30836					85	38	4	0	0	0	0.1243	3	9984	9970;9976;9984		90.601	18.723	1	419820			2217	8267	1596	1605	3318;3319;3320	3320					0.114783260938907
APTLRLVNL	9	Unmodified	_APTLRLVNL_					0	0	0		nc|ENSG00000185615|Q13087-2|PDIA2;ENSG00000185615|ENST00000219406|PDIA2	nc|ENSG00000185615|Q13087-2|PDIA2	nc|ENSG00000185615|Q13087-2|PDIA2	MULTI-MSMS	OvCa9_classI_Rep3	3	498.8130798339844	2	498.813659	995.612765	-0.10557	-5.2658E-05	-0.22118	-0.00011033	-0.32674	-0.00016298	498.8134286419306	107.86	2.1308	106.67	106.38	108.51	-1.1978					94	40	3	0	0	0	0.22035	1	7687	7687		72.879	26.907	1	572750			2218	8267	1596	1605	3321	3321					0.114783260938907
APTLRLVNL	9	Unmodified	_APTLRLVNL_					0	0	0		nc|ENSG00000185615|Q13087-2|PDIA2;ENSG00000185615|ENST00000219406|PDIA2	nc|ENSG00000185615|Q13087-2|PDIA2	nc|ENSG00000185615|Q13087-2|PDIA2	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.81451416015625	2	498.813659	995.612765	-1.804	-0.00089985	1.1667	0.00058198	-0.63725	-0.00031787	498.81412167064707	108.42	2.0013	106.69	106.42	108.42	-1.7256					88	38	3	0	0	0	0.44248	1	9922	9922		47.96	0.30219	1	538280			2219	8267	1596	1605	3322	3322					0.114783260938907
APTPARPVL	9	Unmodified	_APTPARPVL_					0	0	0		chr8:144359423-144360803|424|18.48|0.87|4.41|+|ENST00000526752|SLC52A2,SLC52A2;ENSG00000185803|ENST00000643944|SLC52A2	chr8:144359423-144360803|424|18.48|0.87|4.41|+|ENST00000526752|SLC52A2,SLC52A2	chr8:144359423-144360803|424|18.48|0.87|4.41|+|ENST00000526752|SLC52A2,SLC52A2	MULTI-MSMS	OvCa9_classI_Rep4_	4	461.2803039550781	2	461.279452	920.544351	-0.05612	-2.5887E-05	-0.55085	-0.00025409	-0.60697	-0.00027998	461.2792444083872	68.484	0.83611	64.994	64.769	65.605	-3.4902					58	16	5	0	0	0	0.22621	2	5080	5080;5091		71.877	13.096	1	574420			2220	541	1597	1606	3323;3324	3323					0.08090081514046688
APTPARPVL	9	Unmodified	_APTPARPVL_					0	0	0		chr8:144359423-144360803|424|18.48|0.87|4.41|+|ENST00000526752|SLC52A2,SLC52A2;ENSG00000185803|ENST00000643944|SLC52A2	chr8:144359423-144360803|424|18.48|0.87|4.41|+|ENST00000526752|SLC52A2,SLC52A2	chr8:144359423-144360803|424|18.48|0.87|4.41|+|ENST00000526752|SLC52A2,SLC52A2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	461.279452	920.544351	-1.028	-0.00047419	0.95179	0.00043904	-0.076211	-3.5155E-05	461.27990202323815	67.73	0.88866	65.069	64.594	65.483	-2.661	0.037294	0.0010257	NaN	71.877	52	17	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135120			2221	541	1597	1606							0.08090081514046688
APTPIQALTL	10	Unmodified	_APTPIQALTL_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	OvCa9_classI_Rep2	2	512.8047485351562	2	512.8055	1023.59645	0.96769	0.00049623	-0.86044	-0.00044124	0.10725	5.4996E-05	512.8048988441653	129.99	1.0876	129.77	129.46	130.55	-0.22696					55	21	4	0	0	0	0.62712	1	12771	12771		38.754	5.9412	1	154290			2222	1827	1598	1607	3325	3325					0.0855920013711966
APTPIQALTL	10	Unmodified	_APTPIQALTL_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	OvCa9_classI_Rep3	3	512.8056030273438	2	512.8055	1023.59645	0.48569	0.00024906	-0.496	-0.00025435	-0.010311	-5.2876E-06	512.8051194113467	130.74	1.1749	129.61	129.32	130.49	-1.1249					50	23	3	0	0	0	0.61634	1	10379	10379		40.058	3.0297	1	153750			2223	1827	1598	1607	3326	3326					0.0855920013711966
APVCPLLLAAL	11	Unmodified	_APVCPLLLAAL_					0	0	0			REV__ENST00000366592.7_2_1:236306173-236341839:+|nuORF	REV__ENST00000366592.7_2_1:236306173-236341839:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	540.8217163085938	2	540.827921	1079.64129	-5.3143	-0.0028741	-1.4287	-0.00077266	-6.743	-0.0036468	540.826839745021	155.99	0.54268	154.92	154.74	155.28	-1.073					33	15	3	0	0	0	0.71591	1	13417	13417		24.203	0	1	35530	+		2224	24879	1599	1608	3327	3327					0.1046530767882814
APVGPRAAMS	10	Unmodified	_APVGPRAAMS_					0	0	0		ENSG00000185133|ENST00000331075|INPP5J	ENSG00000185133|ENST00000331075|INPP5J	ENSG00000185133|ENST00000331075|INPP5J	MULTI-MSMS	OvCa9_classI_Rep2	2	478.7518310546875	2	478.752744	955.490935	-1.4226	-0.0006811	1.1828	0.00056628	-0.23984	-0.00011482	478.7532346703681	50.895	2.769	48.101	47.63	50.399	-2.794					110	55	3	0	0	0	0.35465	3	3315	3297;3315;3322		74.255	10.749	1	1064500			2225	8228	1600	1609	3328;3329;3330	3329					0.011409607398604749
APVGPRAAMS	10	Unmodified	_APVGPRAAMS_					0	0	0		ENSG00000185133|ENST00000331075|INPP5J	ENSG00000185133|ENST00000331075|INPP5J	ENSG00000185133|ENST00000331075|INPP5J	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.75225830078125	2	478.752744	955.490935	-0.55239	-0.00026446	-0.31881	-0.00015263	-0.87121	-0.00041709	478.75267825392433	51.072	2.719	47.898	47.464	50.183	-3.1734					136	53	4	0	0	0	0.35465	2	2977	2977;3065		74.255	5.4682	1	6347700			2226	8228	1600	1609	3331;3332	3331					0.011409607398604749
APVIRPII	8	Unmodified	_APVIRPII_					0	0	0		nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	MULTI-MSMS	OvCa9_classI_Rep3	3	439.7947082519531	2	439.794738	877.574923	2.1512	0.00094608	-2.0115	-0.00088466	0.13966	6.1422E-05	439.7937294670286	112.09	1.5248	110.98	110.55	112.07	-1.1038					83	30	4	0	0	0	0.63104	1	8173	8173		57.453	0	1	308550			2227	3776	1601	1610	3333	3333					0.1312385989907625
APVKKLVV	8	Unmodified	_APVKKLVV_					0	0	0		ENSG00000116251|ENST00000234875|RPL22	ENSG00000116251|ENST00000234875|RPL22	ENSG00000116251|ENST00000234875|RPL22	MULTI-SECPEP	OvCa9_classI_Rep4_	4	427.2303771972656	2	427.297114	852.579674	-0.08563	-3.659E-05	0.25631	0.00010952	0.17068	7.2933E-05	427.2971941497379	52.583	0.35717	49.375	49.145	49.502	-3.208					10	6	2	0	0	0	0.028476	1	3135	3135		19.36	0	1	13858			2228	3167	1602	1611	3334	3334					0.14748744041844475
APVKRASL	8	Unmodified	_APVKRASL_					0	0	0		FXR2|p.R497Pfs*12|1|0.08|ENSG00000129245|chr17:7593022-7593023|-/G|frameshift_variant;ENSG00000129245|ENST00000250113|FXR2;MAP4K2-FXR2|1|fusion	FXR2|p.R497Pfs*12|1|0.08|ENSG00000129245|chr17:7593022-7593023|-/G|frameshift_variant	FXR2|p.R497Pfs*12|1|0.08|ENSG00000129245|chr17:7593022-7593023|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	421.26666259765625	2	421.266345	840.518136	0.049621	2.0904E-05	0.13322	5.6123E-05	0.18285	7.7027E-05	421.2662780743609	38.209	0.89103	35.282	35.106	35.997	-2.9264					37	17	3	0	0	0	0.6962	1	1473	1473		44.117	5.3107	1	124510			2229	3926	1603	1612	3335	3335					0.09149812342559471
APVKRASL	8	Unmodified	_APVKRASL_					0	0	0		FXR2|p.R497Pfs*12|1|0.08|ENSG00000129245|chr17:7593022-7593023|-/G|frameshift_variant;ENSG00000129245|ENST00000250113|FXR2;MAP4K2-FXR2|1|fusion	FXR2|p.R497Pfs*12|1|0.08|ENSG00000129245|chr17:7593022-7593023|-/G|frameshift_variant	FXR2|p.R497Pfs*12|1|0.08|ENSG00000129245|chr17:7593022-7593023|-/G|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	421.266345	840.518136	-1.452	-0.00061167	1.8274	0.0007698	0.37538	0.00015814	421.26700651802696	38.104	0.54434	35.395	35.222	35.766	-2.7097	0.056141	0.00084651	NaN	44.117	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29982			2230	3926	1603	1612							0.09149812342559471
APVNISKAI	9	Unmodified	_APVNISKAI_					0	0	0		nc|ENSG00000120907|P35348-3|ADRA1A;nc|ENSG00000120907|P35348-4|ADRA1A;ENSG00000120907|ENST00000380573|ADRA1A;nc|ENSG00000120907|P35348-2|ADRA1A;nc|ENSG00000120907|P35348-5|ADRA1A;nc|ENSG00000120907|P35348-7|ADRA1A;nc|ENSG00000120907|P35348-6|ADRA1A;nc|ENSG00000120907|P35348-8|ADRA1A;nc|ENSG00000120907|P35348-9|ADRA1A	nc|ENSG00000120907|P35348-3|ADRA1A	nc|ENSG00000120907|P35348-3|ADRA1A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.7679748535156	2	456.779285	911.544017	0.94804	0.00043305	4.3763	0.001999	5.3243	0.002432	456.78073241638276	37.558	0.34905	34.666	34.492	34.841	-2.8925					11	6	2	0	0	0	0.027441	1	1411	1411		37.159	0	1	15029			2231	3459	1604	1613	3336	3336					0.08470661794183343
APVPPLRLV	9	Unmodified	_APVPPLRLV_					0	0	0			REV__ENST00000494348.1_1_19:7974966-7975513:+|nuORF	REV__ENST00000494348.1_1_19:7974966-7975513:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	481.3130798339844	2	481.313295	960.612037	0.1367	6.5794E-05	-0.25624	-0.00012333	-0.11954	-5.7538E-05	481.31300277026764	111.59	1.6261	111.45	110.98	112.61	-0.13961					80	32	4	0	0	0	0.59983	1	10564	10564		31.955	0	1	293810	+		2232	26723	1605	1614	3337	3337					0.1301553144483023
APVRGLLV	8	Unmodified	_APVRGLLV_					0	0	0			REV__ENST00000272402.2_1_2:96932001-96933385:+|nuORF	REV__ENST00000272402.2_1_2:96932001-96933385:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	412.7709655761719	2	412.771263	823.527973	1.187	0.00048995	-0.67717	-0.00027952	0.5098	0.00021043	412.77082954843223	92.604	1.5518	91.436	91.024	92.575	-1.168					68	29	4	0	0	0	0.66704	1	8250	8250		50.025	3.2581	1	349930	+		2233	16145	1606	1615	3338	3338					0.10915000347949899
APVSPRAVT	9	Unmodified	_APVSPRAVT_					0	0	0			REV__CD55-UBE2G2|1|fusion	REV__CD55-UBE2G2|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	449.26239013671875	2	449.261259	896.507966	0.31742	0.00014261	-0.42027	-0.00018881	-0.10285	-4.6206E-05	449.26089829627006	58.583	1.2974	55.191	54.852	56.149	-3.392					57	25	3	0	0	0	0.35444	1	3869	3869		56.721	3.3696	1	296220	+		2234	15762	1607	1616	3339	3339					0.055572046173210765
APVSPRAVT	9	Unmodified	_APVSPRAVT_					0	0	0			REV__CD55-UBE2G2|1|fusion	REV__CD55-UBE2G2|1|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	449.261259	896.507966	2.1112	0.00094847	-1.9284	-0.00086636	0.18276	8.2106E-05	449.2602065211195	58.09	1.052	55.298	54.922	55.975	-2.792	0.053056	-0.00079888	NaN	56.721	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65166	+		2235	15762	1607	1616							0.055572046173210765
APVSPRAVT	9	Unmodified	_APVSPRAVT_					0	0	0			REV__CD55-UBE2G2|1|fusion	REV__CD55-UBE2G2|1|fusion	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	449.261259	896.507966	0.31742	0.00014261	-0.42027	-0.00018881	-0.10285	-4.6206E-05	449.26089829627006	58.583	1.2974	55.191	54.852	56.149	-3.392	-0.053056	0.00055623	NaN	56.721	57	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	296220	+		2236	15762	1607	1616							0.055572046173210765
APYAASRLL	9	Unmodified	_APYAASRLL_					0	0	0		ENSG00000155465|ENST00000674313|SLC7A7;SLC7A7|p.S266Ifs*29|1|0.04|ENSG00000155465|chr14:22776293-22776294|-/T|frameshift_variant	ENSG00000155465|ENST00000674313|SLC7A7	ENSG00000155465|ENST00000674313|SLC7A7	MULTI-MSMS	OvCa9_classI_Rep2	2	481.27679443359375	2	481.276909	960.539266	0.19197	9.239E-05	-0.23107	-0.00011121	-0.039103	-1.8819E-05	481.27646864528947	82.286	1.2382	80.637	80.127	81.365	-1.6485					49	23	3	0	0	0	0.34132	1	7014	7014		58.23	5.2932	1	616830			2237	5785	1608	1617	3340	3340					0.05741777651417124
APYAASRLL	9	Unmodified	_APYAASRLL_					0	0	0		ENSG00000155465|ENST00000674313|SLC7A7;SLC7A7|p.S266Ifs*29|1|0.04|ENSG00000155465|chr14:22776293-22776294|-/T|frameshift_variant	ENSG00000155465|ENST00000674313|SLC7A7	ENSG00000155465|ENST00000674313|SLC7A7	MULTI-MSMS	OvCa9_classI_Rep3	3	481.2770690917969	2	481.276909	960.539266	-0.84437	-0.00040637	0.28781	0.00013852	-0.55655	-0.00026786	481.2765253033959	82.702	1.8002	80.406	80.138	81.938	-2.2963					67	37	3	0	0	0	0.1944	3	4675	4675;4681;4688		77.318	7.69	1	1347300			2238	5785	1608	1617	3341;3342;3343	3341					0.05741777651417124
APYAASRLL	9	Unmodified	_APYAASRLL_					0	0	0		ENSG00000155465|ENST00000674313|SLC7A7;SLC7A7|p.S266Ifs*29|1|0.04|ENSG00000155465|chr14:22776293-22776294|-/T|frameshift_variant	ENSG00000155465|ENST00000674313|SLC7A7	ENSG00000155465|ENST00000674313|SLC7A7	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.2782897949219	2	481.276909	960.539266	-0.22958	-0.00011049	0.36203	0.00017424	0.13245	6.3747E-05	481.2767165547781	83.249	1.1214	80.586	80.29	81.412	-2.6629					52	22	3	0	0	0	0.2077	2	6920	6920;6933		75.043	20.279	1	953480			2239	5785	1608	1617	3344;3345	3344					0.05741777651417124
APYERRAMEL	10	Unmodified	_APYERRAMEL_					0	0	0		ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	MULTI-MSMS	OvCa9_classI_Rep2	2	412.5440673828125	3	412.54489	1234.61284	-0.29848	-0.00012314	0.43976	0.00018142	0.14129	5.8287E-05	412.54500040495725	63.707	1.6813	60.962	60.427	62.108	-2.7444					93	31	4	0	0	0	0.26424	5	4843	4812;4822;4828;4835;4843		85.161	26.915	1	573180			2240	3974	1609	1618	3346;3347;3348;3349;3350	3350					0.00491958031602735
APYERRAMEL	10	Unmodified	_APYERRAMEL_					0	0	0		ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	MULTI-MSMS	OvCa9_classI_Rep4_	4	412.5455627441406	3	412.54489	1234.61284	0.79838	0.00032937	-0.70036	-0.00028893	0.098022	4.0438E-05	412.5445182866249	64.552	1.65	61.067	60.675	62.325	-3.4854					84	33	4	0	0	0	0.34811	3	4604	4592;4604;4618		75.043	25.01	1	1243100			2241	3974	1609	1618	3351;3352;3353	3352					0.00491958031602735
APYGIGKANA	10	Unmodified	_APYGIGKANA_					0	0	0			REV__nc|ENSG00000152102|A1KXE4-2|FAM168B	REV__nc|ENSG00000152102|A1KXE4-2|FAM168B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.2774353027344	2	481.258717	960.50288	-0.23271	-0.000112	0.11187	5.3839E-05	-0.12084	-5.8156E-05	481.25869813389687	83.42	0.4893	80.758	80.437	80.926	-2.6629					12	9	2	0	0	0	0.026688	1	6909	6909		40.778	16.259	1	17752	+		2242	20269	1610	1619	3354	3354					0.02104900754704886
APYGRITL	8	Unmodified	_APYGRITL_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;nc|ENSG00000273749|Q7L576-3|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	OvCa9_classI_Rep3	3	445.75885009765625	2	445.758352	889.502152	-0.76087	-0.00033916	0.46758	0.00020843	-0.29329	-0.00013074	445.75848316138865	83.153	1.3165	80.857	80.53	81.846	-2.2963					49	27	2	0	0	0	0.29515	3	4743	4728;4735;4743		108.09	31.241	1	1060400			2243	1221;9559	1611	1620	3355;3356;3357	3357					0.052981061056470935
APYGRITL	8	Unmodified	_APYGRITL_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;nc|ENSG00000273749|Q7L576-3|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	445.7594909667969	2	445.758352	889.502152	0.33174	0.00014788	-0.47125	-0.00021006	-0.13951	-6.2188E-05	445.75798297872035	83.692	1.4698	81.029	80.681	82.15	-2.6629					64	30	4	0	0	0	0.42649	1	6976	6976		84.916	8.0689	1	775600			2244	1221;9559	1611	1620	3358	3358					0.052981061056470935
APYGRITL	8	Unmodified	_APYGRITL_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;nc|ENSG00000273749|Q7L576-3|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	445.758352	889.502152	2.3943	0.0010673	-2.5553	-0.0011391	-0.16104	-7.1784E-05	445.7570947114116	82.639	1.8898	81.04	80.593	82.483	-1.5989	0.06492	-0.0013098	NaN	108.09	81	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	471800			2245	1221;9559	1611	1620							0.052981061056470935
APYPHSKKL	9	Unmodified	_APYPHSKKL_					0	0	0		ENSG00000203857|ENST00000369413|HSD3B1;HSD3B1|p.S264Rfs*3|1|0.06|ENSG00000203857|chr1:119514313-119514314|-/G|frameshift_variant;ENST00000434856.1_1_1:120144028-120151554:+|nuORF	ENSG00000203857|ENST00000369413|HSD3B1;ENST00000434856.1_1_1:120144028-120151554:+|nuORF	ENST00000434856.1_1_1:120144028-120151554:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	520.7979125976562	2	520.798009	1039.58147	-2.3393	-0.0012183	1.8465	0.00096167	-0.49275	-0.00025662	520.7988321454784	36.331	1.3811	33.621	33.4	34.781	-2.7097					74	27	4	0	0	0	0.16562	6	1545	1535;1539;1545;1551;1558;1564		82.241	36.539	1	644080			2246	8936;11852	1612	1621	3359;3360;3361;3362;3363;3364	3361					0.06325753059809358
APYPHSKKL	9	Unmodified	_APYPHSKKL_					0	0	0		ENSG00000203857|ENST00000369413|HSD3B1;HSD3B1|p.S264Rfs*3|1|0.06|ENSG00000203857|chr1:119514313-119514314|-/G|frameshift_variant;ENST00000434856.1_1_1:120144028-120151554:+|nuORF	ENSG00000203857|ENST00000369413|HSD3B1;ENST00000434856.1_1_1:120144028-120151554:+|nuORF	ENST00000434856.1_1_1:120144028-120151554:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.7978515625	2	520.798009	1039.58147	0.59197	0.0003083	-1.1345	-0.00059084	-0.54252	-0.00028254	520.797385276476	36.315	1.995	33.466	33.139	35.134	-2.849					141	39	6	0	0	0	0.012163	6	1249	1227;1237;1249;1261;1273;1286		161.9	55.483	1	2408500			2247	8936;11852	1612	1621	3365;3366;3367;3368;3369;3370	3367					0.06325753059809358
APYPHSKKL	9	Unmodified	_APYPHSKKL_					0	0	0		ENSG00000203857|ENST00000369413|HSD3B1;HSD3B1|p.S264Rfs*3|1|0.06|ENSG00000203857|chr1:119514313-119514314|-/G|frameshift_variant;ENST00000434856.1_1_1:120144028-120151554:+|nuORF	ENSG00000203857|ENST00000369413|HSD3B1;ENST00000434856.1_1_1:120144028-120151554:+|nuORF	ENST00000434856.1_1_1:120144028-120151554:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	520.798009	1039.58147	-0.77412	-0.00040316	7.4319	0.0038705	6.6578	0.0034674	521.3035543471357	33.381	0.29703	33.381	33.236	33.533	0	-0.10842	0.0079663	NaN	161.9	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11246			2248	8936;11852	1612	1621							0.06325753059809358
APYPLYPAEL	10	Unmodified	_APYPLYPAEL_					0	0	0		ENSG00000157110|ENST00000397323|RBPMS;nc|ENSG00000157110|Q93062-2|RBPMS;nc|ENSG00000157110|Q93062-3|RBPMS	ENSG00000157110|ENST00000397323|RBPMS	ENSG00000157110|ENST00000397323|RBPMS	MULTI-MSMS	OvCa9_classI_Rep2	2	567.2972412109375	2	567.297507	1132.58046	0.96103	0.00054519	-1.0525	-0.00059706	-0.091432	-5.1869E-05	567.2967185608663	128.69	1.2374	128.46	128.13	129.37	-0.22696					75	24	5	0	0	0	0.3976	3	12611	12601;12606;12611		68.787	9.9088	1	313380			2249	5875	1613	1622	3371;3372;3373	3373					0.019474939002293468
APYPLYPAEL	10	Unmodified	_APYPLYPAEL_					0	0	0		ENSG00000157110|ENST00000397323|RBPMS;nc|ENSG00000157110|Q93062-2|RBPMS;nc|ENSG00000157110|Q93062-3|RBPMS	ENSG00000157110|ENST00000397323|RBPMS	ENSG00000157110|ENST00000397323|RBPMS	MULTI-MSMS	OvCa9_classI_Rep3	3	567.2973022460938	2	567.297507	1132.58046	0.42871	0.0002432	-0.35455	-0.00020114	0.074156	4.2068E-05	567.2971466273868	129.51	1.1381	128.4	128.04	129.18	-1.1121					71	22	5	0	0	0	0.46756	3	10237	10231;10237;10248		58.782	10.822	1	263930			2250	5875	1613	1622	3374;3375;3376	3375					0.019474939002293468
APYPLYPAEL	10	Unmodified	_APYPLYPAEL_					0	0	0		ENSG00000157110|ENST00000397323|RBPMS;nc|ENSG00000157110|Q93062-2|RBPMS;nc|ENSG00000157110|Q93062-3|RBPMS	ENSG00000157110|ENST00000397323|RBPMS	ENSG00000157110|ENST00000397323|RBPMS	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.296875	2	567.297507	1132.58046	2.5275	0.0014339	-2.6733	-0.0015165	-0.14572	-8.2664E-05	567.2957813300864	129.76	1.238	128.31	127.94	129.18	-1.4565					74	24	4	0	0	0	0.48198	2	12442	12419;12442		56.721	8.9393	1	391040			2251	5875	1613	1622	3377;3378	3378					0.019474939002293468
APYSRPKQL	9	Unmodified	_APYSRPKQL_					0	0	0		nc|ENSG00000183684|Q86V81|ALYREF;ENSG00000183684|ENST00000505490|ALYREF	nc|ENSG00000183684|Q86V81|ALYREF	nc|ENSG00000183684|Q86V81|ALYREF	MULTI-MSMS	OvCa9_classI_Rep2	2	530.3013305664062	2	530.300916	1058.58728	-1.2018	-0.00063734	0.54922	0.00029125	-0.65262	-0.00034608	530.3011926456317	46.882	1.3381	44.172	43.794	45.133	-2.7097					74	26	4	0	0	0	0.041116	5	2819	2815;2819;2829;2838;2845		125.81	35.148	1	727090			2252	8095	1614	1623	3379;3380;3381;3382;3383	3380					0.06032851571490028
AQAAALYKV	9	Unmodified	_AQAAALYKV_					0	0	0		ENST00000483659.5_1_2:85622736-85628768:-|nuORF;nc|ENSG00000042493|P40121-2|CAPG;ENSG00000042493|ENST00000263867|CAPG	ENST00000483659.5_1_2:85622736-85628768:-|nuORF	ENST00000483659.5_1_2:85622736-85628768:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	467.7727355957031	2	467.77146	933.528367	0.61306	0.00028677	-0.72414	-0.00033873	-0.11108	-5.196E-05	467.770922828815	66.789	0.48045	66.789	66.575	67.055	0					26	11	3	0	0	0	0.026923	1	6216	6216		138.83	37.573	1	2526200			2253	1124	1615	1624	3384	3384					0.05894375277136987
AQAEEPPAQGL	11	Unmodified	_AQAEEPPAQGL_					0	0	0		ENST00000453178.1_1_1:36182222-36184415:-|nuORF	ENST00000453178.1_1_1:36182222-36184415:-|nuORF	ENST00000453178.1_1_1:36182222-36184415:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.7750244140625	2	555.774928	1109.5353	0.23824	0.00013241	-0.4538	-0.00025221	-0.21556	-0.0001198	555.77460180428	51.82	1.665	48.647	47.922	49.587	-3.1734					78	32	4	0	0	0	0.52842	1	3089	3089		51.193	1.6567	1	947320			2254	12068	1616	1625	3385	3385					-0.015083566329394671
AQAKHAIQI	9	Unmodified	_AQAKHAIQI_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.Q2480Lfs*11|1|0.07|ENSG00000103657|chr15:63674749-63674750|-/A|frameshift_variant	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	OvCa99_classI_Rep5	1	490.2879943847656	2	490.287808	978.561064	-0.76726	-0.00037618	0.55197	0.00027062	-0.21529	-0.00010555	490.28792169543823	41.615	0.82393	41.615	41.375	42.199	0					45	18	4	0	0	0	0.18193	1	2616	2616		79.451	5.4763	1	1452900			2255	2336	1617	1626	3386	3386					0.07092582399980074
AQAKHAIQI	9	Unmodified	_AQAKHAIQI_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.Q2480Lfs*11|1|0.07|ENSG00000103657|chr15:63674749-63674750|-/A|frameshift_variant	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	490.287808	978.561064	-0.84932	-0.00041641	0.43345	0.00021252	-0.41587	-0.0002039	490.28760058052376	44.577	0.55768	41.539	41.362	41.919	-3.0385	-0.038258	-9.3965E-05	NaN	79.451	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33207			2256	2336	1617	1626							0.07092582399980074
AQAKIEKI	8	Unmodified	_AQAKIEKI_					0	0	0		ENST00000557932.5_1_15:102506277-102513446:+|nuORF;nc|ENSG00000185596|C4AMC7|WASH3P;nc|ENSG00000291134|Q6VEQ5|WASH2P;ENSG00000181404|ENST00000696149|WASHC1;ENST00000488147.1_1_1:17367-18318:-|nuORF;ENST00000400706.3_1_12:87289-88257:+|nuORF;ENST00000568710.1_1_16:67585-84971:-|nuORF;nc|ENSG00000292372|Q9NQA3|WASH6P;nc|ENSG00000234769|A8MWX3|WASH4P;ENSG00000182484|ENST00000359512|WASH6P	ENST00000557932.5_1_15:102506277-102513446:+|nuORF	ENST00000557932.5_1_15:102506277-102513446:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	450.778564453125	2	450.779285	899.544017	-0.22755	-0.00010258	0.5316	0.00023964	0.30405	0.00013706	450.7793545222521	37.918	0.63378	37.918	37.714	38.348	0					31	13	4	0	0	0	0.66992	1	2124	2124		49.442	4.9105	1	564190			2257	7930	1618	1627	3387	3387					0.09022661794188025
AQANIEPIIN	10	Unmodified	_AQANIEPIIN_					0	0	0			REV__LRIG2|p.V532Gfs*39|1|0.07|ENSG00000198799|chr1:113110359-113110359|T/-|frameshift_variant	REV__LRIG2|p.V532Gfs*39|1|0.07|ENSG00000198799|chr1:113110359-113110359|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.73876953125	2	541.795663	1081.57677	-2.3924	-0.0012962	-2.092	-0.0011334	-4.4844	-0.0024296	542.297413169327	107.52	0.41132	105.64	105.33	105.74	-1.8784					11	7	2	0	0	0	0.026803	1	9786	9786		56.434	30.984	1	15631	+		2258	23065	1619	1628	3388	3388					0.03924824126374915
AQANKEAKL	9	Unmodified	_AQANKEAKL_					0	0	0			REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	MULTI-MSMS	OvCa99_classI_Rep5	1	486.7784423828125	2	486.777274	971.539994	0.077278	3.7617E-05	-0.80199	-0.00039039	-0.72471	-0.00035277	486.776834688707	57.463	1.0565	57.463	57.138	58.194	0					57	24	6	0	0	0	0.1243	1	4811	4811		90.601	5.44	1	8414700	+		2259	17868	1620	1629	3389	3389					0.053085723004642205
AQAQQLRTDS	10	Unmodified	_AQAQQLRTDS_					0	0	0			REV__ENSG00000267368|ENST00000340457|UPK3BL1	REV__ENSG00000267368|ENST00000340457|UPK3BL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.286865234375	2	559.283451	1116.55235	1.6773	0.00093807	3.8384	0.0021468	5.5157	0.0030848	559.2853993749533	33.558	2.4419	30.77	30.259	32.701	-2.7881					125	48	3	0	0	0	0.73378	1	885	885		26.693	1.1189	1	122450	+		2260	23590	1621	1630	3390	3390					-0.001264360271534315
AQAQVRIV	8	Unmodified	_AQAQVRIV_					0	0	0		nc|ENSG00000008710|P98161-2|PKD1;nc|ENSG00000008710|P98161-3|PKD1;ENSG00000008710|ENST00000262304|PKD1;ENST00000532739.1_1_16:16459039-16460653:+|nuORF	nc|ENSG00000008710|P98161-2|PKD1	nc|ENSG00000008710|P98161-2|PKD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	442.5316162109375	2	442.769252	883.52395	1.3069	0.00057865	-1.2294	-0.00054434	0.077478	3.4305E-05	442.76855010560575	63.529	0.3954	63.529	63.337	63.732	0					12	9	2	0	0	0	0.028476	1	5736	5736		18.324	3.6603	1	202790			2261	924	1622	1631	3391	3391					0.07752910854219408
AQAWSTKLP	9	Unmodified	_AQAWSTKLP_					0	0	0			REV__ENST00000458005.2_1_17:9738025-9745865:+|nuORF	REV__ENST00000458005.2_1_17:9738025-9745865:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.3091125488281	2	501.274367	1000.53418	-1.3385	-0.00067097	-2.8937	-0.0014505	-4.2322	-0.0021215	501.2728914848642	33.137	0.35081	30.427	30.321	30.672	-2.7097					9	6	2	0	0	0	0.027461	1	1150	1150		25.574	3.6142	1	13248	+		2262	26054	1623	1632	3392	3392					0.033934737887989286
AQCIYTQGRS	10	Unmodified	_AQCIYTQGRS_					0	0	0			REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR	REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.8165893554688	2	563.769123	1125.52369	1.0677	0.00060196	3.3981	0.0019158	4.4659	0.0025177	563.7708696327954	62.468	0.97599	59.011	58.618	59.594	-3.4577					39	19	3	0	0	0	0.027145	1	4397	4397		31.53	12.17	1	129340	+		2263	19683	1624	1633	3393	3393					-0.034048769279252156
AQCIYTQGRS	10	Unmodified	_AQCIYTQGRS_					0	0	0			REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR	REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR	MULTI-MATCH	OvCa9_classI_Rep2	2		2	563.769123	1125.52369	-1.2435	-0.00070106	5.7113	0.0032198	4.4677	0.0025188	563.7721496756482	61.856	0.86024	59.097	58.672	59.533	-2.7593	0.042992	0.0011545	NaN	39.253	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23244	+		2264	19683	1624	1633							-0.034048769279252156
AQEARLLAQF	10	Unmodified	_AQEARLLAQF_					0	0	0			REV__CCDC87|p.E633Rfs*9|1|0.06|ENSG00000182791|chr11:66591120-66591120|T/-|frameshift_variant	REV__CCDC87|p.E633Rfs*9|1|0.06|ENSG00000182791|chr11:66591120-66591120|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	573.817626953125	2	573.81693	1145.61931	-0.97359	-0.00055867	1.7602	0.0010101	0.78664	0.00045139	573.8179009947893	36.373	1.0401	36.373	36.119	37.159	0					63	22	4	0	0	0	0.62299	1	1925	1925		39.253	5.0803	1	2135600	+		2265	15752	1625	1634	3394	3394					0.052322192545943835
AQEPLLQSR	9	Unmodified	_AQEPLLQSR_					0	0	0		ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-3|SPTBN4;nc|ENSG00000160460|Q9H254-4|SPTBN4	ENSG00000160460|ENST00000598249|SPTBN4	ENSG00000160460|ENST00000598249|SPTBN4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3394165039062	2	521.288005	1040.56146	-0.40641	-0.00021186	-0.31843	-0.000166	-0.72484	-0.00037785	521.2877275228378	39.177	1.638	36.251	35.552	37.19	-2.9264					49	32	3	0	0	0	0.027462	1	1681	1681		27.882	0	1	142900			2266	6068	1626	1635	3395	3395					0.04279957329163153
AQEPSLLEFF	10	Unmodified	_AQEPSLLEFF_					0	0	0		nc|ENSG00000051009|Q8N612-2|FHIP1B;nc|ENSG00000051009|Q8N612-3|FHIP1B;ENSG00000051009|ENST00000449352|FHIP1B	nc|ENSG00000051009|Q8N612-2|FHIP1B	nc|ENSG00000051009|Q8N612-2|FHIP1B	MULTI-MSMS	OvCa99_classI_Rep5	1	590.7988891601562	2	590.797872	1179.58119	1.1888	0.00070233	1.9887	0.0011749	3.1775	0.0018773	590.7985778833332	138.52	3.6805	138.52	137.91	141.59	0					181	76	4	0	0	0	0.61634	1	16187	16187		40.058	7.2458	1	227430			2267	14874	1627	1636	3396	3396					-0.0014171145071486535
AQFAARAII	9	Unmodified	_AQFAARAII_					0	0	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10821544-10823273:-|nuORF	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2752990722656	2	480.784902	959.55525	2.4523	0.001179	-0.17806	-8.5607E-05	2.2742	0.0010934	480.7845702156323	86.896	0.45973	86.896	86.594	87.054	0					23	10	3	0	0	0	0.027433	1	9179	9179		71.296	54.591	1	955370			2268	2767	1628	1637	3397	3397					0.07385483888310773
AQFTTALRL	9	Unmodified	_AQFTTALRL_					0	0	0		ENSG00000129933|ENST00000262815|MAU2;ENST00000262816.11_1_19:19456115-19463084:+|nuORF;nc|ENSG00000129933|Q9Y6X3-2|MAU2	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-MSMS	OvCa99_classI_Rep5	1	510.79791259765625	2	510.795466	1019.57638	2.502	0.001278	-0.65853	-0.00033637	1.8434	0.00094161	510.79490665064503	99.515	0.78049	99.515	99.076	99.856	0					27	14	3	0	0	0	0.23241	1	10994	10994		70.816	16.04	1	2489700			2269	3948	1629	1638	3398	3398					0.06737449197169099
AQGGGKAGKLW	11	Unmodified	_AQGGGKAGKLW_					0	0	0		ENST00000332810.3_1_15:89174144-89174384:+|nuORF	ENST00000332810.3_1_15:89174144-89174384:+|nuORF	ENST00000332810.3_1_15:89174144-89174384:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3294067382812	2	536.79854	1071.58253	-0.57297	-0.00030757	0.75552	0.00040556	0.18255	9.7993E-05	536.7987018715457	28.977	0.34877	28.977	28.739	29.087	0					9	6	2	0	0	0	0.025298	1	1000	1000		39.253	0	1	39917			2270	10462	1630	1639	3399	3399					0.04959967428703749
AQGKVKLVV	9	Unmodified	_AQGKVKLVV_					0	0	0		ENSG00000148943|ENST00000278193|LIN7C	ENSG00000148943|ENST00000278193|LIN7C	ENSG00000148943|ENST00000278193|LIN7C	MULTI-MSMS	OvCa99_classI_Rep5	1	471.3116149902344	2	471.310752	940.606951	-0.25579	-0.00012056	0.44295	0.00020877	0.18716	8.8208E-05	471.31074535934926	52.251	0.96124	52.251	51.995	52.956	0					49	21	4	0	0	0	0.22961	1	4097	4097		71.296	15.791	1	3788200			2271	5434	1631	1640	3400	3400					0.13427227582246815
AQGNRGNKAFS	11	Unmodified	_AQGNRGNKAFS_					0	0	0			REV__ENST00000396359.1_1_8:82193222-82195661:+|nuORF	REV__ENST00000396359.1_1_8:82193222-82195661:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.33154296875	2	575.291611	1148.56867	1.8546	0.001067	3.8211	0.0021982	5.6757	0.0032652	575.2939107363455	92.726	0.12775	92.726	92.635	92.762	0					4	2	2	0	0	0	0.02538	1	10031	10031		30.318	0	1	70636	+		2272	25331	1632	1641	3401	3401					0.0003268992961693584
AQGRRALSY	9	Unmodified	_AQGRRALSY_					0	0	0		nc|ENSG00000144802|Q9BYH8-3|NFKBIZ;nc|ENSG00000144802|Q9BYH8-2|NFKBIZ;ENSG00000144802|ENST00000326172|NFKBIZ	nc|ENSG00000144802|Q9BYH8-3|NFKBIZ	nc|ENSG00000144802|Q9BYH8-3|NFKBIZ	MULTI-MSMS	OvCa9_classI_Rep2	2	511.28326416015625	2	511.280515	1020.54648	-0.80674	-0.00041247	2.8248	0.0014443	2.0181	0.0010318	511.282075128337	99.586	1.489	98.756	98.069	99.558	-0.83051					70	29	3	0	0	0	0.44568	1	9088	9088		47.657	3.2801	1	393670			2273	5182	1633	1642	3402	3402					0.037025102518555286
AQGVFQILI	9	Unmodified	_AQGVFQILI_					0	0	0		ENSG00000074181|ENST00000263388|NOTCH3;ENSG00000134250|ENST00000256646|NOTCH2;ENSG00000148400|ENST00000651671|NOTCH1	ENSG00000074181|ENST00000263388|NOTCH3;ENSG00000134250|ENST00000256646|NOTCH2;ENSG00000148400|ENST00000651671|NOTCH1	ENSG00000134250|ENST00000256646|NOTCH2	MULTI-MSMS	OvCa99_classI_Rep5	1	494.7955627441406	2	494.794935	987.575317	0.89038	0.00044055	0.91362	0.00045205	1.804	0.00089261	494.79531091291057	154.59	0.7077	154.59	154.22	154.93	0					31	13	3	0	0	0	0.46377	1	18112	18112		45.952	0	1	205830			2274	4270;5409;1507	1634	1643	3403	3403					0.08103234828286077
AQHQQLLR	8	Unmodified	_AQHQQLLR_					0	0	0			REV__ENSG00000150764|ENST00000440460|DIXDC1	REV__ENSG00000150764|ENST00000440460|DIXDC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.26885986328125	2	497.283057	992.551562	3.2265	0.0016045	-2.5856	-0.0012858	0.64089	0.0003187	497.2811483243697	133.79	1.3806	132.27	132	133.38	-1.5257					58	27	4	0	0	0	0.028476	1	12927	12927		12.207	0	1	133500	+		2275	20203	1635	1644	3404	3404					0.054988141144804104
AQHQQVRQI	9	Unmodified	_AQHQQVRQI_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000411586.1_1_1:226626563-226626776:+|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MSMS	OvCa99_classI_Rep5	1	554.3043823242188	2	554.304521	1106.59449	0.13296	7.3701E-05	-0.63655	-0.00035284	-0.50359	-0.00027914	554.3041411286503	31.782	0.54597	31.782	31.608	32.154	0					22	10	3	0	0	0	0.13482	1	1338	1338		87.754	13.78	1	614980			2276	5224	1636	1645	3405	3405					0.04545584171910377
AQHSVPLQL	9	Unmodified	_AQHSVPLQL_					0	0	0		nc|ENSG00000102871|Q15628-2|TRADD;ENSG00000102871|ENST00000345057|TRADD	nc|ENSG00000102871|Q15628-2|TRADD	nc|ENSG00000102871|Q15628-2|TRADD	MULTI-MSMS	OvCa99_classI_Rep5	1	496.7807312011719	2	496.779816	991.545079	0.69323	0.00034438	1.5261	0.00075811	2.2193	0.0011025	496.7801088570681	81.412	0.6553	81.412	81.12	81.776	0					54	15	4	0	0	0	0.35444	1	8400	8400		56.721	3.3696	1	6629000			2277	2260	1637	1646	3406	3406					0.04896876163093111
AQHSVTGSAV	10	Unmodified	_AQHSVTGSAV_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MSMS	OvCa99_classI_Rep5	1	478.74365234375	2	478.743431	955.472308	-0.77564	-0.00037133	0.38654	0.00018505	-0.3891	-0.00018628	478.74343172034236	37.136	0.69024	37.136	36.931	37.621	0					29	14	4	0	0	0	0.13777	1	2012	2012		104.06	35.27	1	519970			2278	1504	1638	1647	3407	3407					-0.007208776303173181
AQIGSYVHV	9	Unmodified	_AQIGSYVHV_					0	0	0		nc|ENSG00000166847|Q9BTE1-2|DCTN5;ENST00000566053.5_1_16:23652819-23678462:+|nuORF;ENSG00000166847|ENST00000300087|DCTN5	nc|ENSG00000166847|Q9BTE1-2|DCTN5	nc|ENSG00000166847|Q9BTE1-2|DCTN5	MULTI-MSMS	OvCa99_classI_Rep5	1	487.2596435546875	2	487.258717	972.50288	2.2629	0.0011026	1.4994	0.00073059	3.7623	0.0018332	487.2596762438309	80.548	0.80689	80.548	80.314	81.12	0					40	18	4	0	0	0	0.074342	1	8255	8255		104.75	27.9	1	5148700			2279	6721	1639	1648	3408	3408					0.015529007547115725
AQIKAILV	8	Unmodified	_AQIKAILV_					0	0	0			REV__tr|A0A553SPZ2|A0A553SPZ2_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_15225PE=4SV=1	REV__tr|A0A553SPZ2|A0A553SPZ2_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_15225PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	428.2879638671875	2	428.286746	854.558939	2.3152	0.00099156	0.17192	7.363E-05	2.4871	0.0010652	428.28670621321993	102.88	0.71461	102.88	102.59	103.3	0					41	16	4	0	0	0	0.66704	1	11504	11504		50.025	5.9077	1	3068000	+		2280	30587	1640	1649	3409	3409					0.12584153662191966
AQINVPFLTL	10	Unmodified	_AQINVPFLTL_					0	0	0		ENSG00000205108|ENST00000378788|FAM205A;nc|ENSG00000257198|Q63HN1|SPATA31F2P	ENSG00000205108|ENST00000378788|FAM205A	ENSG00000205108|ENST00000378788|FAM205A	MULTI-MSMS	OvCa99_classI_Rep5	1	558.3258666992188	2	558.326599	1114.63865	0.2464	0.00013757	-3.6037	-0.002012	-3.3573	-0.0018745	558.3245357118514	60.637	1.3893	60.637	60.314	61.704	0					41	32	2	0	0	0	0.35465	1	5296	5296		74.255	5.4682	1	1433800			2281	9051	1641	1650	3410	3410					0.08591175545507213
AQINWLPE	8	Unmodified	_AQINWLPE_					0	0	0			REV__nc|ENSG00000139182|Q9BQT9-2|CLSTN3	REV__nc|ENSG00000139182|Q9BQT9-2|CLSTN3	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.3088684082031	2	485.753267	969.491981	-0.17713	-8.6043E-05	0.84047	0.00040826	0.66334	0.00032222	485.75636088292873	30.428	0.29586	30.428	30.236	30.532	0					10	5	3	0	0	0	0.028476	1	1180	1180		45.952	0	1	24330	+		2282	19595	1642	1651	3411	3411					0.0060149838041070325
AQIPLAAVI	9	Unmodified	_AQIPLAAVI_					0	0	0		ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D;ENST00000514561.5_1_4:119681750-119745902:-|nuORF;ENST00000509818.5_1_4:119687763-119745832:-|nuORF	ENSG00000150961|ENST00000280551|SEC24D;ENST00000509818.5_1_4:119687763-119745832:-|nuORF	ENSG00000150961|ENST00000280551|SEC24D	MULTI-MSMS	OvCa99_classI_Rep5	1	448.2872619628906	2	448.284203	894.553853	2.0713	0.00092855	0.14049	6.2978E-05	2.2118	0.00099153	448.28399962724245	138.4	0.57617	138.4	138.16	138.74	0					22	11	3	0	0	0	0.44294	1	16141	16141		47.916	3.3845	1	61326			2283	5524;12966	1643	1652	3412	3412					0.10235849799562402
AQIQVQHV	8	Unmodified	_AQIQVQHV_					0	0	0		ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	ENSG00000198218|ENST00000395443|QRICH1	MULTI-MSMS	OvCa99_classI_Rep5	1	461.760009765625	2	461.758884	921.503215	-0.44896	-0.00020731	0.46256	0.00021359	0.013593	6.2765E-06	461.7590217707775	55.098	0.99921	55.098	54.805	55.804	0					49	23	4	0	0	0	0.2826	2	4475	4475;4507		110.34	36.362	1	7734500			2284	8798	1644	1653	3413;3414	3413					0.0393232047457559
AQIRTIAI	8	Unmodified	_AQIRTIAI_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	OvCa99_classI_Rep5	1	443.2808837890625	2	443.279452	884.544351	2.279	0.0010102	-0.18956	-8.4026E-05	2.0894	0.0009262	443.27927468409433	79.259	0.35728	79.259	79.037	79.394	0					15	8	2	0	0	0	0.33046	1	8065	8065		101.6	9.4101	1	1150700			2285	4070	1645	1654	3415	3415					0.09746081514037996
AQITQKIGV	9	Unmodified	_AQITQKIGV_					0	0	0		ENSG00000187608|ENST00000649529|ISG15	ENSG00000187608|ENST00000649529|ISG15	ENSG00000187608|ENST00000649529|ISG15	MULTI-MSMS	OvCa99_classI_Rep5	1	479.2912292480469	2	479.290017	956.565481	0.62292	0.00029856	-0.79936	-0.00038312	-0.17644	-8.4566E-05	479.2893282505408	67.23	0.93953	67.23	66.977	67.916	0					44	23	4	0	0	0	0.094791	1	6270	6270		98.582	28.954	1	6917500			2286	8418	1646	1655	3416	3416					0.0854604682289164
AQKARPSWAR	10	Unmodified	_AQKARPSWAR_					0	0	0			REV__nc|ENSG00000171992|Q8N3V7|SYNPO	REV__nc|ENSG00000171992|Q8N3V7|SYNPO	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.373291015625	2	585.828163	1169.64177	1.2225	0.00071617	1.9064	0.0011168	3.1289	0.001833	585.8292832256378	81.816	0.60625	81.816	81.413	82.02	0					22	14	2	0	0	0	0.02706	1	8449	8449		17.468	0	1	246390	+		2287	29006	1647	1656	3417	3417					0.06373863442877337
AQKENSVSI	9	Unmodified	_AQKENSVSI_					0	0	0		nc|ENSG00000039560|Q9P0K7-4|RAI14;nc|ENSG00000039560|Q9P0K7-3|RAI14;ENSG00000039560|ENST00000265109|RAI14;nc|ENSG00000039560|Q9P0K7-2|RAI14	nc|ENSG00000039560|Q9P0K7-4|RAI14	nc|ENSG00000039560|Q9P0K7-4|RAI14	MULTI-MSMS	OvCa99_classI_Rep5	1	488.25762939453125	2	488.258914	974.503274	0.35719	0.0001744	-0.47347	-0.00023118	-0.11627	-5.6772E-05	488.2586000077691	45.474	0.86721	45.474	45.202	46.069	0					49	19	3	0	0	0	0.027568	2	3136	3133;3136		138.06	11.82	1	4399700			2288	1107	1648	1657	3418;3419	3419					0.01500275683918062
AQKENSVSI	9	Unmodified	_AQKENSVSI_					0	0	0		nc|ENSG00000039560|Q9P0K7-4|RAI14;nc|ENSG00000039560|Q9P0K7-3|RAI14;ENSG00000039560|ENST00000265109|RAI14;nc|ENSG00000039560|Q9P0K7-2|RAI14	nc|ENSG00000039560|Q9P0K7-4|RAI14	nc|ENSG00000039560|Q9P0K7-4|RAI14	MULTI-SECPEP	OvCa9_classI_Rep4_	4	488.7887878417969	2	488.258914	974.503274	-0.46252	-0.00022583	1.1144	0.00054412	0.6519	0.0003183	488.2589603906509	55.773	1.0111	52.478	52.21	53.221	-3.2944					32	19	3	0	0	0	0.027425	1	3520	3520		79.713	4.6693	1	355920			2289	1107	1648	1657	3420	3420					0.01500275683918062
AQKENSVSI	9	Unmodified	_AQKENSVSI_					0	0	0		nc|ENSG00000039560|Q9P0K7-4|RAI14;nc|ENSG00000039560|Q9P0K7-3|RAI14;ENSG00000039560|ENST00000265109|RAI14;nc|ENSG00000039560|Q9P0K7-2|RAI14	nc|ENSG00000039560|Q9P0K7-4|RAI14	nc|ENSG00000039560|Q9P0K7-4|RAI14	MULTI-MATCH	OvCa9_classI_Rep2	2		2	488.258914	974.503274	-0.68048	-0.00033225	1.2352	0.00060312	0.55477	0.00027087	488.25914786357987	55.51	1.0914	52.706	52.382	53.473	-2.804	0.11398	5.8882E-05	NaN	69.628	26	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61670			2290	1107	1648	1657							0.01500275683918062
AQKGFESKV	9	Unmodified	_AQKGFESKV_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	497.2711181640625	2	497.271824	992.529095	-0.35502	-0.00017654	-0.56831	-0.00028261	-0.92334	-0.00045915	497.2715469262288	35.73	1.013	35.73	35.429	36.442	0					58	21	5	0	0	0	0.066171	2	1816	1816;1840		109.44	19.069	1	7606200			2291	6293	1649	1658	3421;3422	3421					0.03253169926188093
AQKIEVRI	8	Unmodified	_AQKIEVRI_					0	0	0		nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000480260.1_1_3:183899436-183900037:+|nuORF;ENST00000461733.5_1_3:183898306-183901401:+|nuORF	nc|ENSG00000161203|Q96CW1-2|AP2M1	nc|ENSG00000161203|Q96CW1-2|AP2M1	MULTI-MSMS	OvCa99_classI_Rep5	1	478.7987060546875	2	478.798009	955.581465	0.0053992	2.5851E-06	-0.24909	-0.00011926	-0.24369	-0.00011668	478.79775575018215	60.579	0.97981	60.579	60.352	61.332	0					53	22	4	0	0	0	0.42405	1	5290	5290		85.161	5.4482	1	5789700			2292	6123	1650	1659	3423	3423					0.10189753059808027
AQKKQEIKV	9	Unmodified	_AQKKQEIKV_					0	0	0		nc|ENSG00000079819|O43491-2|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2	nc|ENSG00000079819|O43491-2|EPB41L2	nc|ENSG00000079819|O43491-2|EPB41L2	MULTI-MSMS	OvCa99_classI_Rep5	1	536.3294067382812	2	536.329673	1070.64479	-0.5319	-0.00028528	0.10973	5.8854E-05	-0.42217	-0.00022642	536.3296333863043	29.062	0.64802	29.062	28.888	29.536	0					35	12	4	0	0	0	0.1944	1	1000	1000		77.318	0	1	833770			2293	1622	1651	1660	3424	3424					0.11229693777045213
AQKLGFKI	8	Unmodified	_AQKLGFKI_					0	0	0		ENSG00000122299|ENST00000355758|ZC3H7A;ENST00000575170.1_1_16:11869425-11876228:-|nuORF	ENSG00000122299|ENST00000355758|ZC3H7A	ENSG00000122299|ENST00000355758|ZC3H7A	MULTI-MSMS	OvCa99_classI_Rep5	1	452.785888671875	2	452.78437	903.554188	0.36152	0.00016369	0.78618	0.00035597	1.1477	0.00051966	452.784412039578	67.442	0.47008	67.442	67.212	67.683	0					31	11	4	0	0	0	0.57878	1	6308	6308		68.485	10.673	1	1770800			2294	3525	1652	1661	3425	3425					0.09855269519414378
AQKLQYRVN	9	Unmodified	_AQKLQYRVN_					0	0	0		nc|ENSG00000154975|Q9NS85-2|CA10;ENSG00000154975|ENST00000451037|CA10	nc|ENSG00000154975|Q9NS85-2|CA10	nc|ENSG00000154975|Q9NS85-2|CA10	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.8180541992188	2	560.317097	1118.61964	1.4877	0.00083359	1.6738	0.00093786	3.1615	0.0017715	560.3175726996657	139.01	3.9887	139.01	138.55	142.54	0					108	81	2	0	0	0	0.027441	1	16195	16195		45.952	8.7928	1	88702			2295	5762	1653	1662	3426	3426					0.06507638974449037
AQKPLRLLWSA	11	Unmodified	_AQKPLRLLWSA_					0	0	0			REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.448906025747238|0.1317034148076854|3.46|417.0|207|1|anti-sense	REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.448906025747238|0.1317034148076854|3.46|417.0|207|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8817138671875	2	641.885147	1281.75574	-4.6434	-0.0029805	0.6524	0.00041876	-3.991	-0.0025618	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.71789	1	15672	15672		23.523	4.4192	1	543390	+		2296	28484	1654	1663	3427	3427					0.12613333485114708
AQKRVLLQA	9	Unmodified	_AQKRVLLQA_					0	0	0		ENSG00000111581|ENST00000229179|NUP107;ENST00000540453.5_1_12:69080821-69083416:+|nuORF;ENST00000539906.5_2_12:69082787-69085752:+|nuORF;ENST00000535333.5_1_12:69080821-69090662:+|nuORF;ENST00000537598.5_1_12:69080821-69103022:+|nuORF	ENSG00000111581|ENST00000229179|NUP107	ENSG00000111581|ENST00000229179|NUP107	MULTI-MSMS	OvCa99_classI_Rep5	1	513.8248291015625	2	513.824558	1025.63456	-0.23913	-0.00012287	-0.015218	-7.8195E-06	-0.25435	-0.00013069	513.8243680976396	44.905	0.75876	44.905	44.573	45.332	0					51	16	4	0	0	0	0.22961	1	3066	3066		71.296	2.5089	1	1128500			2297	2830	1655	1664	3428	3428					0.12277130842471706
AQLAHIQAL	9	Unmodified	_AQLAHIQAL_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19	CON__P08727	CON__P08727	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.78314208984375	2	482.782359	963.550165	-0.48274	-0.00023306	0.62862	0.00030349	0.14589	7.0432E-05	482.78257862252354	82.832	1.3663	80.149	79.635	81.002	-2.6829					61	27	3	0	0	0	0.12365	1	6872	6872		90.777	27.47	1	645050		+	2298	625	1656	1665	3429	3429					0.06693180025683887
AQLILKAI	8	Unmodified	_AQLILKAI_					0	0	0		ENST00000511494.5_1_5:134670668-134681802:-|nuORF;ENST00000512507.5_1_5:134670668-134688768:-|nuORF;nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1	ENST00000511494.5_1_5:134670668-134681802:-|nuORF	ENST00000511494.5_1_5:134670668-134681802:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	435.29559326171875	2	435.294571	868.574589	3.1448	0.0013689	-0.63783	-0.00027764	2.5069	0.0010912	435.294129819894	95.993	0.59469	95.993	95.743	96.338	0					27	13	3	0	0	0	0.2826	1	10494	10494		110.34	0	1	1156600			2299	2987	1657	1666	3430	3430					0.13504440179224275
AQLLLPGLSD	10	Unmodified	_AQLLLPGLSD_					0	0	0			REV__nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	REV__nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	MULTI-MSMS	OvCa9_classI_Rep3	3	513.7948608398438	2	513.795132	1025.57571	1.119	0.00057493	-1.297	-0.00066642	-0.17805	-9.1483E-05	513.7943991863143	128.58	1.0865	127.49	127.22	128.31	-1.0933					43	21	3	0	0	0	0.73378	1	10121	10121		26.693	2.1889	1	164730	+		2300	18666	1658	1667	3431	3431					0.06394609757489889
AQLNGVFLKYS	11	Unmodified	_AQLNGVFLKYS_					0	0	0			REV__sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1	REV__sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	620.3587646484375	2	620.340238	1238.66592	-0.041163	-2.5535E-05	-2.8712	-0.0017811	-2.9124	-0.0018067	620.3379475764024	57.77	0.33331	57.77	57.566	57.899	0					14	7	3	0	0	0	0.025701	1	4849	4849		29.17	7.4843	1	176010	+		2301	29432	1659	1668	3432	3432					0.05613659085884137
AQLNRASQY	9	Unmodified	_AQLNRASQY_					0	0	0		nc|ENSG00000211785|A0A0B4J245|TRAV12-1	nc|ENSG00000211785|A0A0B4J245|TRAV12-1	nc|ENSG00000211785|A0A0B4J245|TRAV12-1	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.29296875	2	525.76998	1049.52541	-0.28665	-0.00015071	2.5015	0.0013152	2.2149	0.0011645	525.7700219008416	40.162	0.39753	37.452	37.302	37.7	-2.7097					11	7	2	0	0	0	0.027462	1	2017	2017		27.882	3.6795	1	13959			2302	15295	1660	1669	3433	3433					0.0026250015232562873
AQLPAHRV	8	Unmodified	_AQLPAHRV_					0	0	0		nc|ENSG00000106144|P42575-2|CASP2;ENST00000493642.5_1_7:142986735-143000877:+|nuORF;ENST00000472067.1_1_7:142991698-142998016:+|nuORF;ENSG00000106144|ENST00000310447|CASP2	nc|ENSG00000106144|P42575-2|CASP2	nc|ENSG00000106144|P42575-2|CASP2	MULTI-MSMS	OvCa99_classI_Rep5	1	446.2620544433594	2	446.261594	890.508634	0.024693	1.1019E-05	-0.056883	-2.5384E-05	-0.03219	-1.4365E-05	446.2614230651997	37.586	0.95634	37.586	37.298	38.254	0					48	20	4	0	0	0	0.65062	2	2063	2063;2087		53.351	1.0523	1	1307800			2303	2533	1661	1670	3434;3435	3434					0.059000440570343926
AQLSRASLRI	10	Unmodified	_AQLSRASLRI_					0	0	0		ENSG00000149654|ENST00000537909|CDH22	ENSG00000149654|ENST00000537909|CDH22	ENSG00000149654|ENST00000537909|CDH22	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.3518676757812	2	557.838197	1113.66184	-0.6634	-0.00037007	-3.4639	-0.0019323	-4.1273	-0.0023024	557.8366886237939	27.766	0.1496	27.766	27.641	27.791	0					4	2	2	0	0	0	0.026606	1	844	844		44.377	10.456	1	15411			2304	5485	1662	1671	3436	3436					0.10955614382851309
AQLVAATQEV	10	Unmodified	_AQLVAATQEV_					0	0	0			REV__nc|ENSG00000163349|Q86Z02-2|HIPK1	REV__nc|ENSG00000163349|Q86Z02-2|HIPK1	MULTI-MSMS	OvCa9_classI_Rep3	3	515.2832641601562	2	515.282389	1028.55022	0.94124	0.00048501	-1.1969	-0.00061674	-0.25566	-0.00013174	515.2818157223961	106.61	4.2629	105.34	104.28	108.54	-1.267					165	82	5	0	0	0	0.65849	1	7597	7597		35.152	8.4591	1	4317700	+		2305	20829	1663	1672	3437	3437					0.03709135235044414
AQLYQIISL	9	Unmodified	_AQLYQIISL_					0	0	0			REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4	REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.8045654296875	2	524.8055	1047.59645	-1.2668	-0.00066484	0.27215	0.00014283	-0.99469	-0.00052202	524.8056155005146	93.196	3.165	90.689	90.412	93.577	-2.5072					175	64	5	0	0	0	0.22961	1	8226	8226		71.296	4.8664	1	7764100	+		2306	18871	1664	1673	3438	3438					0.07455200137133033
AQMAGPPQPQ	10	Unmodified	_AQMAGPPQPQ_					0	0	0		ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D;ENST00000514561.5_1_4:119681750-119745902:-|nuORF;ENST00000509818.5_1_4:119687763-119745832:-|nuORF	ENSG00000150961|ENST00000280551|SEC24D;ENST00000509818.5_1_4:119687763-119745832:-|nuORF	ENSG00000150961|ENST00000280551|SEC24D	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.3041381835938	2	512.747659	1023.48076	-0.022626	-1.1602E-05	-2.1138	-0.0010838	-2.1364	-0.0010954	512.7459547153824	101.73	0.76626	101.73	101.36	102.12	0					22	17	2	0	0	0	0.027088	1	11370	11370		9.1829	0	1	173800			2307	5524;12966	1665	1674	3439	3439					-0.030036469853712333
AQMYREKI	8	Unmodified	_AQMYREKI_					0	0	0		ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ARFGAP2|p.K215Efs*8|1|0.14|ENSG00000149182|chr11:47172310-47172311|-/C|frameshift_variant;ENST00000527097.5_1_11:47193699-47198404:-|nuORF;nc|ENSG00000149182|Q8N6H7-2|ARFGAP2;ARFGAP2|p.L480Rfs*13|1|0.19|ENSG00000149182|chr11:47166373-47166374|CA/-|frameshift_variant;ENSG00000149182|ENST00000524782|ARFGAP2;ENST00000524727.5_1_11:47194869-47198404:-|nuORF	ENST00000395449.7_1_11:47187835-47198404:-|nuORF	ENST00000395449.7_1_11:47187835-47198404:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	519.774169921875	2	519.773677	1037.5328	1.2718	0.00066103	-0.71745	-0.00037291	0.55432	0.00028812	519.7732287380198	127.54	1.531	127.31	126.99	128.52	-0.23578					82	30	5	0	0	0	0.65062	1	12473	12473		53.351	1.0523	1	538520			2308	11289	1666	1675	3440	3440					0.015535164283846825
AQNARALKI	9	Unmodified	_AQNARALKI_					0	0	0		ENSG00000136273|ENST00000258774|HUS1;nc|ENSG00000136273|O60921-2|HUS1;ENST00000468868.1_1_7:48017962-48019116:-|nuORF	ENSG00000136273|ENST00000258774|HUS1	ENSG00000136273|ENST00000258774|HUS1	MULTI-MSMS	OvCa99_classI_Rep5	1	492.80133056640625	2	492.801083	983.587613	-0.74526	-0.00036727	0.54098	0.0002666	-0.20428	-0.00010067	492.80110751057185	44.523	0.7174	44.523	44.26	44.977	0					24	15	3	0	0	0	0.24951	1	3019	3019		68.787	5.4806	1	770830			2309	4480	1667	1676	3441	3441					0.09516271291306566
AQNKLFNKI	9	Unmodified	_AQNKLFNKI_					0	0	0		nc|ENSG00000114982|Q9P2N6-8|KANSL3;nc|ENSG00000114982|Q9P2N6-6|KANSL3;ENST00000447759.5_3_2:97261350-97293793:-|nuORF;nc|ENSG00000114982|Q9P2N6-2|KANSL3;nc|ENSG00000114982|Q9P2N6-5|KANSL3;nc|ENSG00000114982|Q9P2N6-4|KANSL3;ENSG00000114982|ENST00000431828|KANSL3;nc|ENSG00000114982|Q9P2N6|KANSL3;nc|ENSG00000114982|Q9P2N6-7|KANSL3	nc|ENSG00000114982|Q9P2N6-8|KANSL3;nc|ENSG00000114982|Q9P2N6-7|KANSL3	nc|ENSG00000114982|Q9P2N6-7|KANSL3	MULTI-MSMS	OvCa99_classI_Rep5	1	538.3167114257812	2	538.316566	1074.61858	-0.59864	-0.00032226	0.66061	0.00035562	0.061973	3.3361E-05	538.3167805317917	59.187	0.71553	59.187	59.011	59.726	0					45	18	4	0	0	0	0.013645	1	5089	5089		157.21	36.588	1	9025600			2310	3053;14973	1668	1677	3442	3442					0.0842542460554796
AQNPVLREV	9	Unmodified	_AQNPVLREV_					0	0	0		nc|ENSG00000203722|Q6H3X3-3|RAET1G;nc|ENSG00000203722|Q6H3X3-2|RAET1G;ENSG00000203722|ENST00000367360|RAET1G;ENSG00000131015|ENST00000367351|ULBP2;ENSG00000155918|ENST00000367341|RAET1L	nc|ENSG00000203722|Q6H3X3-3|RAET1G;ENSG00000155918|ENST00000367341|RAET1L	nc|ENSG00000203722|Q6H3X3-3|RAET1G	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.2904663085938	2	513.290548	1024.56654	-1.4346	-0.00073638	0.63807	0.00032752	-0.79655	-0.00040886	513.2908188244072	72.605	1.6006	69.209	68.813	70.414	-3.3961					78	32	4	0	0	0	0.23241	2	5583	5583;5607		70.816	26.699	1	731180			2311	8926;5809	1669	1678	3443;3444	3443					0.055242611917947215
AQNPVLREV	9	Unmodified	_AQNPVLREV_					0	0	0		nc|ENSG00000203722|Q6H3X3-3|RAET1G;nc|ENSG00000203722|Q6H3X3-2|RAET1G;ENSG00000203722|ENST00000367360|RAET1G;ENSG00000131015|ENST00000367351|ULBP2;ENSG00000155918|ENST00000367341|RAET1L	nc|ENSG00000203722|Q6H3X3-3|RAET1G;ENSG00000155918|ENST00000367341|RAET1L	nc|ENSG00000203722|Q6H3X3-3|RAET1G	MULTI-MATCH	OvCa9_classI_Rep2	2		2	513.290548	1024.56654	0.56957	0.00029236	-0.73442	-0.00037697	-0.16485	-8.4615E-05	513.2900723424631	71.623	1.2579	69.116	68.541	69.799	-2.5072	-0.046272	-0.00073323	NaN	70.816	60	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207820			2312	8926;5809	1669	1678							0.055242611917947215
AQNQVLNLI	9	Unmodified	_AQNQVLNLI_					0	0	0		ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2	ENSG00000117748|ENST00000373912|RPA2	ENSG00000117748|ENST00000373912|RPA2	MULTI-MSMS	OvCa99_classI_Rep5	1	506.79425048828125	2	506.792924	1011.57129	0.91648	0.00046447	0.81014	0.00041057	1.7266	0.00087504	506.79321218797116	124.28	0.68874	124.28	124.06	124.74	0					27	14	3	0	0	0	0.16524	1	14336	14336		82.305	11.009	1	405510			2313	3277	1670	1679	3445	3445					0.06597145334569632
AQNRFLLEL	9	Unmodified	_AQNRFLLEL_					0	0	0		ENST00000525522.5_1_11:494693-499199:-|nuORF;ENST00000525701.5_1_11:494693-500690:-|nuORF;ENSG00000023191|ENST00000354420|RNH1	ENST00000525522.5_1_11:494693-499199:-|nuORF	ENST00000525522.5_1_11:494693-499199:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	552.3160400390625	2	552.314023	1102.61349	1.2046	0.00066533	0.60198	0.00033248	1.8066	0.0009978	552.3143628683727	113.94	1.1423	113.94	113.42	114.56	0					56	26	4	0	0	0	0.055627	1	12993	12993		115.49	18.021	1	2760300			2314	1036	1671	1680	3446	3446					0.06629120742945815
AQPARLTK	8	Unmodified	_AQPARLTK_					0	0	0			REV__ENST00000450050.6_1_9:132399402-132399723:-|nuORF	REV__ENST00000450050.6_1_9:132399402-132399723:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	441.7796325683594	2	442.769252	883.52395	-1.0142	-0.00044906	2.348	0.0010396	1.3338	0.00059056	442.7696314535373	41.123	1.4572	38.169	37.685	39.142	-2.9541					44	27	2	0	0	0	0.028476	1	1901	1901		24.203	5.8783	1	45761	+		2315	25956	1672	1681	3447	3447					0.07752910854219408
AQPDSVEPVQ	10	Unmodified	_AQPDSVEPVQ_					0	0	0			REV__ENST00000454117.1_1_1:23695790-23697703:+|nuORF	REV__ENST00000454117.1_1_1:23695790-23697703:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	535.260986328125	2	535.261653	1068.50875	-0.42594	-0.00022799	-0.9771	-0.00052301	-1.403	-0.000751	535.2611327126184	35.269	0.97709	35.269	35.052	36.029	0					44	20	4	0	0	0	0.58067	1	1781	1781		44.377	1.9027	1	2286100	+		2316	25793	1673	1682	3448	3448					-0.02276045524286019
AQPGIQMKV	9	Unmodified	_AQPGIQMKV_					0	0	0		nc|ENSG00000054611|Q8WUA7-2|TBC1D22A;nc|ENSG00000054611|Q8WUA7-4|TBC1D22A;MACROD1-TBC1D22A|1|fusion;ENSG00000054611|ENST00000337137|TBC1D22A	nc|ENSG00000054611|Q8WUA7-2|TBC1D22A	nc|ENSG00000054611|Q8WUA7-2|TBC1D22A	MULTI-MSMS	OvCa99_classI_Rep5	1	486.2724914550781	2	486.27077	970.526987	0.13154	6.3963E-05	-0.33109	-0.000161	-0.19956	-9.7038E-05	486.2705294453316	71.824	0.94339	71.824	71.507	72.45	0					40	22	3	0	0	0	0.33652	1	6953	6953		58.782	8.7574	1	3533300			2317	1211	1674	1683	3449	3449					0.0405441791673411
AQPRPLRSL	9	Unmodified	_AQPRPLRSL_					0	0	0		ENSG00000110237|ENST00000263674|ARHGEF17;ARHGEF17|p.G1624Rfs*4|1|0.4|ENSG00000110237|chr11:73362607-73362608|-/A|frameshift_variant;ARHGEF17|p.Y1216Sfs*5|1|0.09|ENSG00000110237|chr11:73355937-73355937|A/-|frameshift_variant	ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.2925415039062	2	519.314358	1036.61416	0.37007	0.00019218	1.843	0.00095709	2.2131	0.0011493	519.3138420750164	109.66	0.4463	109.49	109.31	109.76	-0.17237					14	8	3	0	0	0	0.027455	1	10303	10303		51.335	23.453	1	37353			2318	110	1675	1684	3450	3450					0.09731960182648436
AQQGLYQV	8	Unmodified	_AQQGLYQV_					0	0	0		nc|ENSG00000050820|P56945-5|BCAR1;nc|ENSG00000050820|P56945-8|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-3|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1	nc|ENSG00000050820|P56945-5|BCAR1	nc|ENSG00000050820|P56945-5|BCAR1	MULTI-SECPEP	OvCa9_classI_Rep3	3	453.2827453613281	2	453.737617	905.460681	-0.90062	-0.00040865	0.77366	0.00035104	-0.12697	-5.761E-05	453.7377702756834	83.059	0.83054	80.763	80.48	81.311	-2.2963					33	16	3	0	0	0	0.028476	1	4695	4695		19.36	7.1531	1	90958			2319	1183	1676	1685	3451	3451					0.004169253463260247
AQQGLYQV	8	Unmodified	_AQQGLYQV_					0	0	0		nc|ENSG00000050820|P56945-5|BCAR1;nc|ENSG00000050820|P56945-8|BCAR1;ENSG00000050820|ENST00000162330|BCAR1;nc|ENSG00000050820|P56945-7|BCAR1;nc|ENSG00000050820|P56945-3|BCAR1;nc|ENSG00000050820|P56945-2|BCAR1;nc|ENSG00000050820|P56945-6|BCAR1	nc|ENSG00000050820|P56945-5|BCAR1	nc|ENSG00000050820|P56945-5|BCAR1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	453.737617	905.460681	2.0825	0.00094491	-2.5005	-0.0011346	-0.41804	-0.00018968	453.7364770395774	82.717	0.96431	81.118	80.54	81.505	-1.5989	0.18302	-0.0011067	NaN	19.36	34	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44030			2320	1183	1676	1685							0.004169253463260247
AQQPPAPPLI	10	Unmodified	_AQQPPAPPLI_					0	0	0		ENST00000409293.5_2_19:1277295-1279069:+|nuORF	ENST00000409293.5_2_19:1277295-1279069:+|nuORF	ENST00000409293.5_2_19:1277295-1279069:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.7747802734375	2	516.297842	1030.58113	0.48501	0.00025041	-1.5939	-0.00082294	-1.1089	-0.00057253	516.2964060609419	109.15	0.52725	107.95	107.72	108.24	-1.1978					13	9	2	0	0	0	0.026697	1	7820	7820		29.15	0	1	46665			2321	11522	1677	1686	3452	3452					0.06706333339934645
AQQPPQLGL	9	Unmodified	_AQQPPQLGL_					0	0	0			REV__ENSG00000164061|ENST00000296452|BSN	REV__ENSG00000164061|ENST00000296452|BSN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.3128356933594	2	476.266542	950.51853	0.077912	3.7107E-05	-0.12896	-6.1421E-05	-0.051051	-2.4314E-05	476.26631941298524	104.62	1.6801	102.5	102.11	103.79	-2.1192					72	32	3	0	0	0	0.027462	1	9510	9510		30.504	13.139	1	281100	+		2322	20930	1678	1687	3453	3453					0.04129187271757928
AQRCHLPQL	9	Unmodified	_AQRCHLPQL_					0	0	0		ENST00000525366.5_1_11:61112846-61113972:+|nuORF	ENST00000525366.5_1_11:61112846-61113972:+|nuORF	ENST00000525366.5_1_11:61112846-61113972:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.2821655273438	2	533.284743	1064.55493	-1.08	-0.00057595	-3.4988	-0.0018658	-4.5788	-0.0024418	533.2829717721623	65.041	1.6951	61.556	61.114	62.81	-3.4854					82	34	3	0	0	0	0.22961	1	4679	4679		71.296	1.6681	1	636750			2323	13191	1679	1688	3454	3454					0.025237408968223463
AQRDKAQVI	9	Unmodified	_AQRDKAQVI_					0	0	0			REV__nc|ENSG00000132466|O75179-2|ANKRD17	REV__nc|ENSG00000132466|O75179-2|ANKRD17	MSMS	OvCa99_classI_Rep5	1	514.7957153320312	2	514.795998	1027.57744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.577	1	37.577	37.077	38.077	0								0	0	0	0.02767	1	2070	2070		108.09	14.892	1		+		2324	19080	1680	1689	3455	3455					0.06475663566084222
AQRGNILPL	9	Unmodified	_AQRGNILPL_					0	0	0		nc|ENSG00000159322|Q9BRR6-5|ADPGK	nc|ENSG00000159322|Q9BRR6-5|ADPGK	nc|ENSG00000159322|Q9BRR6-5|ADPGK	MULTI-MSMS	OvCa99_classI_Rep5	1	491.29620361328125	2	491.295633	980.576714	0.81901	0.00040237	1.7746	0.00087187	2.5936	0.0012742	491.2963800537154	91.039	0.51916	91.039	90.777	91.296	0					30	12	3	0	0	0	0.22913	1	9787	9787		71.378	0	1	2108300			2325	15124	1681	1690	3456	3456					0.08564868917039803
AQRQDLMEA	9	Unmodified	_AQRQDLMEA_					0	0	0			REV__ENSG00000155827|ENST00000389120|RNF20	REV__ENSG00000155827|ENST00000389120|RNF20	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.3072509765625	2	531.255848	1060.49714	-0.71563	-0.00038018	0.79957	0.00042477	0.083941	4.4594E-05	531.2557885172743	59.467	0.53992	56.075	56.002	56.542	-3.392					14	10	2	0	0	0	0.027411	1	3997	3997		23.523	0	1	20922	+		2326	20442	1682	1691	3457	3457					-0.030685658192624032
AQRRQLWWWRR	11	Unmodified	_AQRRQLWWWRR_					0	0	0			REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF	REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.3450927734375	3	547.971037	1640.89128	-0.58604	-0.00032113	-4.1387	-0.0022679	-4.7248	-0.002589	548.303099807109	36.026	0.36547	36.026	35.799	36.164	0					9	7	2	0	0	0	0.026461	1	1872	1872		12.957	11.539	1	64653	+		2327	27928	1683	1692	3458	3458					0.09647046119289371
AQRVAWNLPLT	11	Unmodified	_AQRVAWNLPLT_					0	0	0		ENST00000535639.5_1_12:6559510-6559549:-|nuORF	ENST00000535639.5_1_12:6559510-6559549:-|nuORF	ENST00000535639.5_1_12:6559510-6559549:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	635.2977294921875	2	634.859129	1267.70371	2.4562	0.0015593	-1.9019	-0.0012074	0.55432	0.00035192	634.8580036863707	137.55	0.38724	137.55	137.35	137.74	0					10	7	2	0	0	0	0.025861	1	16047	16047		23.523	0	1	39394			2328	13382	1684	1693	3459	3459					0.08056170071358792
AQSEIHLQV	9	Unmodified	_AQSEIHLQV_					0	0	0		SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant;nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant	SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	512.7750854492188	2	512.774731	1023.53491	1.6804	0.00086167	0.44649	0.00022895	2.1269	0.0010906	512.7748590689613	78.787	0.8257	78.787	78.415	79.24	0					39	19	3	0	0	0	0.14855	1	8004	8004		85.161	23.053	1	3365500			2329	1794	1685	1694	3460	3460					0.02408268437852712
AQSEIHLQV	9	Unmodified	_AQSEIHLQV_					0	0	0		SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant;nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant	SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	512.774731	1023.53491	0.39666	0.00020339	-1.3908	-0.00071317	-0.99416	-0.00050978	512.773873947194	80.551	1.2457	78.856	78.222	79.468	-1.6951	0.18044	-0.0010344	NaN	85.161	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93525			2330	1794	1685	1694							0.02408268437852712
AQSEIHLQV	9	Unmodified	_AQSEIHLQV_					0	0	0		SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant;nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant	SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	512.774731	1023.53491	0.029853	1.5308E-05	-0.52706	-0.00027026	-0.4972	-0.00025495	512.7743653617678	80.774	1.1771	78.451	78.131	79.308	-2.3226	-0.22441	-0.00014853	NaN	85.161	43	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231660			2331	1794	1685	1694							0.02408268437852712
AQSEIHLQV	9	Unmodified	_AQSEIHLQV_					0	0	0		SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant;nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant	SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	512.774731	1023.53491	-0.91925	-0.00047137	-0.041802	-2.1435E-05	-0.96105	-0.0004928	512.7745994515623	81.318	1.0222	78.608	78.249	79.271	-2.7106	-0.067795	0.00034912	NaN	85.161	42	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262450			2332	1794	1685	1694							0.02408268437852712
AQSGPIVAAIL	11	Unmodified	_AQSGPIVAAIL_					0	0	0			REV__ENSG00000158106|ENST00000289013|RHPN1	REV__ENSG00000158106|ENST00000289013|RHPN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.8369750976562	2	520.310949	1038.60735	-0.46218	-0.00024048	3.524	0.0018336	3.0618	0.0015931	520.3127236181532	116.63	1.3901	115.27	114.75	116.14	-1.3645					31	26	2	0	0	0	0.025457	1	10883	10883		36.447	9.7538	1	82277	+		2333	20548	1686	1695	3461	3461					0.08958602511415847
AQSPAKVH	8	Unmodified	_AQSPAKVH_					0	0	0			REV__ENST00000457962.5_1_2:208031798-208031951:-|nuORF	REV__ENST00000457962.5_1_2:208031798-208031951:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	419.23236083984375	2	419.232502	836.450451	-0.096497	-4.0455E-05	0.1351	5.6637E-05	0.0386	1.6183E-05	419.23242870924526	36.021	0.86548	36.021	35.753	36.618	0					39	18	3	0	0	0	0.57734	1	1865	1865		68.787	2.9837	1	1109500	+		2334	26053	1687	1696	3462	3462					0.025683624117505133
AQSPAKVH	8	Unmodified	_AQSPAKVH_					0	0	0			REV__ENST00000457962.5_1_2:208031798-208031951:-|nuORF	REV__ENST00000457962.5_1_2:208031798-208031951:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	419.232502	836.450451	-0.096497	-4.0455E-05	0.1351	5.6637E-05	0.0386	1.6183E-05	419.23242870924526	36.021	0.86548	36.021	35.753	36.618	0	0	0	NaN	68.787	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1109500	+		2335	26053	1687	1696							0.025683624117505133
AQSTSIQRI	9	Unmodified	_AQSTSIQRI_					0	0	0		UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.Q2012Sfs*13|1|0.03|ENSG00000127481|chr1:19156309-19156310|-/A|frameshift_variant;UBR4|p.M2075Wfs*25|1|0.07|ENSG00000127481|chr1:19155519-19155519|A/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-5|UBR4	UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	502.2828369140625	2	502.28018	1002.54581	-0.13025	-6.5423E-05	-0.034653	-1.7406E-05	-0.16491	-8.2829E-05	502.28013925300627	51.272	0.71961	51.272	50.949	51.669	0					38	16	3	0	0	0	0.1149	1	3943	3943		93.143	13.431	1	2798600			2336	3833	1688	1697	3463	3463					0.04463670812140208
AQSTSIQRI	9	Unmodified	_AQSTSIQRI_					0	0	0		UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.Q2012Sfs*13|1|0.03|ENSG00000127481|chr1:19156309-19156310|-/A|frameshift_variant;UBR4|p.M2075Wfs*25|1|0.07|ENSG00000127481|chr1:19155519-19155519|A/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-5|UBR4	UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	502.28018	1002.54581	-1.4362	-0.00072139	5.5326	0.0027789	4.0964	0.0020576	502.28211046626075	54.348	0.46075	51.1	50.927	51.388	-3.2474	-0.085878	0.0053535	NaN	93.143	12	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20146			2337	3833	1688	1697							0.04463670812140208
AQTLIPPLL	9	Unmodified	_AQTLIPPLL_					0	0	0			REV__ENST00000370501.3_1_20:61392300-61392669:+|nuORF	REV__ENST00000370501.3_1_20:61392300-61392669:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.7861633300781	2	483.305136	964.595718	2.8183	0.0013621	-1.3373	-0.00064633	1.481	0.00071579	483.30458011164444	100.74	0.37266	100.74	100.65	101.02	0					13	8	2	0	0	0	0.027441	1	11189	11189		37.159	20.686	1	151090	+		2338	24961	1689	1698	3464	3464					0.11200405488091292
AQTLLVPIVR	10	Unmodified	_AQTLLVPIVR_					0	0	0			REV__ENST00000505031.6_1_12:133313703-133313853:-|nuORF	REV__ENST00000505031.6_1_12:133313703-133313853:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.3543090820312	2	555.355691	1108.69683	-5.7234	-0.0031785	1.8077	0.0010039	-3.9157	-0.0021746	555.3566390635189	159.36	1.8651	157.77	157.41	159.27	-1.5858					127	42	5	0	0	0	0.79213	1	15795	15795		19.997	1.6724	1	1093300	+		2339	26870	1690	1699	3465	3465					0.14682857190791765
AQTLQQYRV	9	Unmodified	_AQTLQQYRV_					0	0	0		ENSG00000126561|ENST00000590949|STAT5A;nc|ENSG00000126561|P42229-2|STAT5A;ENST00000468312.1_1_17:40370167-40384145:-|nuORF;ENSG00000173757|ENST00000293328|STAT5B	ENSG00000126561|ENST00000590949|STAT5A;ENST00000468312.1_1_17:40370167-40384145:-|nuORF	ENSG00000126561|ENST00000590949|STAT5A	MULTI-MSMS	OvCa99_classI_Rep5	1	553.8006591796875	2	553.80128	1105.58801	-0.47854	-0.00026502	-0.26558	-0.00014708	-0.74412	-0.00041209	553.8009823492367	65.41	0.51368	65.41	65.072	65.586	0					31	12	3	0	0	0	0.094616	1	6008	6008		98.629	40.399	1	1476400			2340	3788;7411	1691	1700	3466	3466					0.03943646220500341
AQTLYETLASY	11	Unmodified	_AQTLYETLASY_					0	0	0		ENST00000413697.5_1_2:100019089-100065949:-|nuORF;REV1|p.A1133Dfs*21|1|0.04|ENSG00000135945|chr2:99402787-99402788|-/GT|frameshift_variant;nc|ENSG00000135945|Q9UBZ9-2|REV1;ENSG00000135945|ENST00000258428|REV1	ENST00000413697.5_1_2:100019089-100065949:-|nuORF	ENST00000413697.5_1_2:100019089-100065949:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	630.3098754882812	2	630.311343	1258.60813	-0.29246	-0.00018434	-3.5071	-0.0022106	-3.7996	-0.0023949	630.310529082333	53.3	0.77716	53.3	52.915	53.692	0					36	17	3	0	0	0	0.61983	1	4226	4226		42.864	8.6917	1	426110			2341	4437	1692	1701	3467	3467					-0.01082647630187239
AQTLYETLASY	11	Unmodified	_AQTLYETLASY_					0	0	0		ENST00000413697.5_1_2:100019089-100065949:-|nuORF;REV1|p.A1133Dfs*21|1|0.04|ENSG00000135945|chr2:99402787-99402788|-/GT|frameshift_variant;nc|ENSG00000135945|Q9UBZ9-2|REV1;ENSG00000135945|ENST00000258428|REV1	ENST00000413697.5_1_2:100019089-100065949:-|nuORF	ENST00000413697.5_1_2:100019089-100065949:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	630.311343	1258.60813	-1.5678	-0.0009882	-9.4313	-0.0059446	-10.999	-0.0069328	630.3054839316839	56.373	0.3468	53.569	53.424	53.77	-2.804	0.078172	0.00094764	NaN	42.864	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13243			2342	4437	1692	1701							-0.01082647630187239
AQTLYETLASY	11	Unmodified	_AQTLYETLASY_					0	0	0		ENST00000413697.5_1_2:100019089-100065949:-|nuORF;REV1|p.A1133Dfs*21|1|0.04|ENSG00000135945|chr2:99402787-99402788|-/GT|frameshift_variant;nc|ENSG00000135945|Q9UBZ9-2|REV1;ENSG00000135945|ENST00000258428|REV1	ENST00000413697.5_1_2:100019089-100065949:-|nuORF	ENST00000413697.5_1_2:100019089-100065949:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	630.311343	1258.60813	0.29044	0.00018307	-11.518	-0.0072597	-11.227	-0.0070767	630.3039851552207	56.948	0.81409	53.603	53.324	54.138	-3.3449	0.11231	-0.0016826	NaN	42.864	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54462			2343	4437	1692	1701							-0.01082647630187239
AQVGRLSEP	9	Unmodified	_AQVGRLSEP_					0	0	0		ENST00000262294.11_1_17:57183904-57183988:-|nuORF	ENST00000262294.11_1_17:57183904-57183988:-|nuORF	ENST00000262294.11_1_17:57183904-57183988:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.297607421875	2	478.761623	955.508694	0.03762	1.8011E-05	2.344	0.0011222	2.3816	0.0011402	478.7634163603511	116.79	0.47181	115.43	115.14	115.61	-1.3645					11	8	2	0	0	0	0.027462	1	10917	10917		29.15	4.9468	1	11247			2344	9888	1693	1702	3468	3468					0.029159992663721823
AQVNLKYLL	9	Unmodified	_AQVNLKYLL_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000491816.1_1_1:226549163-226549875:-|nuORF;ENST00000490921.5_1_1:226549163-226553858:-|nuORF	ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226549163-226553858:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	OvCa99_classI_Rep5	1	531.3228149414062	2	531.321317	1060.62808	1.2118	0.00064388	0.70521	0.0003747	1.9171	0.0010186	531.3215612494805	109.48	1.1154	109.48	109.19	110.31	0					45	24	3	0	0	0	0.12365	2	12398	12398;12428		90.777	30.483	1	1654200			2345	5096;12707	1694	1703	3469;3470	3469					0.10019192891104467
AQVNLKYLL	9	Unmodified	_AQVNLKYLL_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000491816.1_1_1:226549163-226549875:-|nuORF;ENST00000490921.5_1_1:226549163-226553858:-|nuORF	ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226549163-226553858:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	531.321317	1060.62808	-0.37081	-0.00019702	1.331	0.00070717	0.96016	0.00051015	531.3213099379743	111.24	0.52626	109.68	109.42	109.95	-1.5649	0.098177	0.0005443	NaN	90.777	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7528.5			2346	5096;12707	1694	1703							0.10019192891104467
AQVQPLPAL	9	Unmodified	_AQVQPLPAL_					0	0	0			REV__ENST00000579809.1_1_17:77080425-77082428:+|nuORF	REV__ENST00000579809.1_1_17:77080425-77082428:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	469.254638671875	2	468.779285	935.544017	1.3514	0.00063351	-2.8823	-0.0013512	-1.5309	-0.00071765	468.77774065005474	86.527	1.1358	83.9	83.613	84.748	-2.6269					37	22	2	0	0	0	0.027425	1	7369	7369		40.573	0	1	54509	+		2347	21266	1695	1704	3471	3471					0.0736666179416261
AQVQVLLYY	9	Unmodified	_AQVQVLLYY_					0	0	0		nc|ENSG00000159842|Q12979-4|ABR;nc|ENSG00000159842|Q12979-2|ABR;ENSG00000159842|ENST00000302538|ABR;nc|ENSG00000159842|Q12979-3|ABR;ENST00000572585.5_1_17:909322-915797:-|nuORF	nc|ENSG00000159842|Q12979-4|ABR	nc|ENSG00000159842|Q12979-4|ABR	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.77099609375	2	548.8055	1095.59645	-0.48697	-0.00026725	3.6841	0.0020219	3.1972	0.0017546	549.3084512556501	29.656	0.24924	29.656	29.536	29.785	0					5	4	2	0	0	0	0.027462	1	1088	1088		18.324	0	1	33750			2348	6031	1696	1705	3472	3472					0.052472001371370425
AQVTPEVQP	9	Unmodified	_AQVTPEVQP_					0	0	0		nc|ENSG00000152910|Q9C0A0-2|CNTNAP4;ENSG00000152910|ENST00000611870|CNTNAP4	nc|ENSG00000152910|Q9C0A0-2|CNTNAP4	nc|ENSG00000152910|Q9C0A0-2|CNTNAP4	MULTI-SECPEP	OvCa9_classI_Rep2	2	483.8268737792969	2	484.756007	967.497461	-0.045056	-2.1841E-05	0.93315	0.00045235	0.88809	0.00043051	484.7558010107431	72.989	0.93892	70.589	70.115	71.054	-2.3999					22	17	2	0	0	0	0.027455	1	5940	5940		34.173	3.6689	1	19447			2349	5650	1697	1706	3473	3473					0.01241177172244079
AQVVGVLKI	9	Unmodified	_AQVVGVLKI_					0	0	0		ENSG00000116489|ENST00000263168|CAPZA1;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;COX6A1-CAPZA1|1|fusion	ENSG00000116489|ENST00000263168|CAPZA1	ENSG00000116489|ENST00000263168|CAPZA1	MULTI-MSMS	OvCa99_classI_Rep5	1	463.8064270019531	2	463.805303	925.596052	2.1023	0.00097506	0.43771	0.00020301	2.54	0.0011781	463.8053866111904	98.058	0.63795	98.058	97.738	98.376	0					31	14	3	0	0	0	0.10363	1	10783	10783		96.19	16.251	1	2308900			2350	3181	1698	1707	3474	3474					0.1302782520792789
AQWLYDNHKD	10	Unmodified	_AQWLYDNHKD_					0	0	0		ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1	ENSG00000130826|ENST00000369550|DKC1	ENSG00000130826|ENST00000369550|DKC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	645.3265991210938	2	645.299101	1288.58365	-0.57747	-0.00037264	3.7134	0.0023962	3.1359	0.0020236	645.8029698479235	99.968	0.45158	97.642	97.468	97.919	-2.3253					13	8	2	0	0	0	0.026734	1	8936	8936		39.253	1.4413	1	20016			2351	4020	1699	1708	3475	3475					-0.049098629930767856
AQYEHDLEV	9	Unmodified	_AQYEHDLEV_					0	0	0		ENSG00000132341|ENST00000543796|RAN;ENST00000455094.1_1_6:30454046-30454364:+|nuORF;ENST00000413691.2_1_4:174554896-174555010:-|nuORF	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	OvCa99_classI_Rep5	1	552.2557373046875	2	552.253828	1102.4931	-0.14534	-8.0266E-05	-0.37944	-0.00020955	-0.52478	-0.00028981	552.2536569078401	70.583	1.7099	70.583	70.246	71.956	0					84	42	5	0	0	0	0.094616	2	6784	6758;6784		98.629	36.522	1	38521000			2352	4131	1700	1709	3476;3477	3477					-0.05404332041325688
AQYEHDLEV	9	Unmodified	_AQYEHDLEV_					0	0	0		ENSG00000132341|ENST00000543796|RAN;ENST00000455094.1_1_6:30454046-30454364:+|nuORF;ENST00000413691.2_1_4:174554896-174555010:-|nuORF	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.25439453125	2	552.253828	1102.4931	-0.7949	-0.00043899	0.050259	2.7755E-05	-0.74464	-0.00041123	552.2538484829438	73.624	1.5824	70.228	69.93	71.512	-3.3961					91	32	5	0	0	0	0.16562	1	5709	5709		82.241	18.707	1	1557500			2353	4131	1700	1709	3478	3478					-0.05404332041325688
AQYENPPHI	9	Unmodified	_AQYENPPHI_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E;MYO1F|p.F172Ifs*2|1|0.03|ENSG00000142347|chr19:8552155-8552156|-/T|frameshift_variant;ENST00000594774.5_1_19:8618146-8642307:-|nuORF;ENST00000595325.5_1_19:8616850-8642307:-|nuORF;ENST00000594977.5_1_19:8612968-8642307:-|nuORF;MYO1F|p.S561Pfs*17|1|0.27|ENSG00000142347|chr19:8539959-8539960|-/AAGACGGA|frameshift_variant;ENSG00000142347|ENST00000644032|MYO1F	ENSG00000157483|ENST00000288235|MYO1E;ENSG00000142347|ENST00000644032|MYO1F	ENSG00000157483|ENST00000288235|MYO1E	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.7819213867188	2	534.759081	1067.50361	-0.093495	-4.9997E-05	0.45746	0.00024463	0.36396	0.00019463	534.7589726277716	66.573	0.60739	66.573	66.25	66.857	0					32	14	3	0	0	0	0.027462	1	6179	6179		42.396	15.703	1	1348900			2354	5894;4968	1701	1710	3479	3479					-0.027443045962399992
AQYFEPLTL	9	Unmodified	_AQYFEPLTL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OvCa99_classI_Rep5	1	541.2835693359375	2	541.281857	1080.54916	1.4067	0.00076144	0.84572	0.00045778	2.2525	0.0012192	541.2820848027826	138.56	0.71954	138.56	138.26	138.98	0					33	14	4	0	0	0	0.059253	1	16168	16168		113.41	50.105	1	1122800			2355	4552	1702	1711	3480	3480					0.012109208661286175
AQYFLDKI	8	Unmodified	_AQYFLDKI_					0	0	0		DLGAP1-GNAS|20|fusion;DLGAP1-GNAS|17|fusion;DLGAP1-GNAS|18|fusion;DLGAP1-GNAS|19|fusion;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;DLGAP1-GNAS|21|fusion;DLGAP1-GNAS|14|fusion;DLGAP1-GNAS|15|fusion;ENSG00000087460|ENST00000371085|GNAS;DLGAP1-GNAS|23|fusion;SETD3-GNAS|1|fusion;SETD3-GNAS|4|fusion;DLGAP1-GNAS|3|fusion;SETD3-GNAS|2|fusion;SETD3-GNAS|3|fusion;nc|ENSG00000087460|P63092-4|GNAS;CADM1-GNAS|4|fusion;DLGAP1-GNAS|24|fusion;DLGAP1-GNAS|11|fusion;DLGAP1-GNAS|2|fusion;nc|ENSG00000087460|P63092-2|GNAS;DLGAP1-GNAS|10|fusion;DLGAP1-GNAS|13|fusion;DLGAP1-GNAS|16|fusion;DLGAP1-GNAS|1|fusion;DLGAP1-GNAS|4|fusion;DLGAP1-GNAS|7|fusion;DLGAP1-GNAS|9|fusion;DLGAP1-GNAS|6|fusion;DLGAP1-GNAS|12|fusion;DLGAP1-GNAS|5|fusion;DLGAP1-GNAS|8|fusion;DLGAP1-GNAS|22|fusion;CADM1-GNAS|1|fusion;SDCCAG8-GNAS|2|fusion;nc|ENSG00000087460|P63092-3|GNAS;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;SDCCAG8-GNAS|4|fusion;SDCCAG8-GNAS|1|fusion;CADM1-GNAS|2|fusion;CADM1-GNAS|3|fusion;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;SDCCAG8-GNAS|3|fusion;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000487981.5_1_20:57478601-57484479:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS	DLGAP1-GNAS|20|fusion;nc|ENSG00000087460|Q5JWF2-2|GNAS	DLGAP1-GNAS|20|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	499.27197265625	2	499.271293	996.528032	2.6296	0.0013129	-0.11151	-5.5676E-05	2.5181	0.0012572	499.2710554354227	99.297	0.53271	99.297	98.955	99.488	0					28	12	3	0	0	0	0.38806	1	10970	10970		90.37	16.395	1	3038200			2356	739;14909	1703	1712	3481	3481					0.029629555572796562
AQYKFVYQV	9	Unmodified	_AQYKFVYQV_					0	0	0		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	MULTI-MSMS	OvCa99_classI_Rep5	1	573.3048706054688	2	573.303124	1144.5917	1.8426	0.0010564	0.024069	1.3799E-05	1.8667	0.0010702	573.302927286132	92.67	0.5835	92.67	92.428	93.011	0					33	13	3	0	0	0	0.091859	1	10021	10021		99.375	35.168	1	1863000			2357	5604	1704	1713	3482	3482					0.02518315994348086
AQYKFVYQV	9	Unmodified	_AQYKFVYQV_					0	0	0		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	MULTI-MATCH	OvCa9_classI_Rep3	3		2	573.303124	1144.5917	-1.0535	-0.000604	-2.8616	-0.0016406	-3.9152	-0.0022446	573.3023933781988	94.7	0.15222	92.804	92.712	92.864	-1.8956	0.067306	-0.0031506	NaN	99.375	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9295.4			2358	5604	1704	1713							0.02518315994348086
AQYLENSL	8	Unmodified	_AQYLENSL_					0	0	0		ENST00000458659.2_2_13:45149342-45149489:-|nuORF	ENST00000458659.2_2_13:45149342-45149489:-|nuORF	ENST00000458659.2_2_13:45149342-45149489:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	469.2540283203125	2	469.234907	936.455261	-0.81334	-0.00038165	-2.7697	-0.0012996	-3.583	-0.0016813	469.233668122858	86.532	0.3497	84.355	84.081	84.431	-2.1768					8	6	2	0	0	0	0.028476	1	5152	5152		71.296	4.8664	1	10716			2359	12140	1705	1714	3483	3483					-0.015507982361441464
AQYLINARL	9	Unmodified	_AQYLINARL_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENSG00000183570|ENST00000681687|PCBP3	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	531.309814453125	2	531.308741	1060.60293	2.3957	0.0012728	-0.35587	-0.00018908	2.0398	0.0010838	531.3086384919052	93.943	1.4885	93.943	93.673	95.161	0					83	34	4	0	0	0	0.053172	1	10234	10234		116.9	12.847	1	40485000			2360	7018	1706	1715	3484	3484					0.07505138088504282
AQYLINVRL	9	Unmodified	_AQYLINVRL_					0	0	0		nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF	nc|ENSG00000197111|Q15366-7|PCBP2	nc|ENSG00000197111|Q15366-7|PCBP2	MULTI-MSMS	OvCa99_classI_Rep5	1	545.3267822265625	2	545.324391	1088.63423	1.87	0.0010198	-0.36347	-0.00019821	1.5066	0.00082157	545.3241379137876	110.83	1.987	110.83	110.4	112.39	0					142	43	5	0	0	0	0.026923	5	12563	12563;12586;12610;12631;12635		138.83	75.292	1	26596000			2361	8677	1707	1716	3485;3486;3487;3488;3489	3485					0.09345711122591638
AQYNPKLDV	9	Unmodified	_AQYNPKLDV_					0	0	0		ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000145675|P27986-4|PIK3R1;nc|ENSG00000145675|P27986-5|PIK3R1;nc|ENSG00000145675|P27986-3|PIK3R1;nc|ENSG00000145675|P27986-2|PIK3R1;ENST00000520550.1_1_5:67588878-67591317:+|nuORF;PIK3R3|p.S297Lfs*6|1|0.02|ENSG00000117461|chr1:46055848-46055849|-/ACCTCTGCCTCCCAGG|frameshift_variant;PIK3R3|p.S297Afs*7|1|0.03|ENSG00000117461|chr1:46055847-46055848|-/GC|frameshift_variant;nc|ENSG00000117461|Q92569-3|PIK3R3;nc|ENSG00000117461|Q92569-2|PIK3R3;ENSG00000117461|ENST00000262741|PIK3R3	ENSG00000145675|ENST00000521381|PIK3R1	ENSG00000145675|ENST00000521381|PIK3R1	MULTI-MSMS	OvCa99_classI_Rep5	1	524.2787475585938	2	524.277106	1046.53966	-0.54076	-0.00028351	0.63759	0.00033427	0.096831	5.0766E-05	524.277389850455	71.244	0.60043	71.244	71.068	71.668	0					46	14	4	0	0	0	0.018335	1	6869	6869		148.99	63.826	1	9868300			2362	5235	1708	1717	3490	3490					0.018251525805908386
AQYNPKLDV	9	Unmodified	_AQYNPKLDV_					0	0	0		ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000145675|P27986-4|PIK3R1;nc|ENSG00000145675|P27986-5|PIK3R1;nc|ENSG00000145675|P27986-3|PIK3R1;nc|ENSG00000145675|P27986-2|PIK3R1;ENST00000520550.1_1_5:67588878-67591317:+|nuORF;PIK3R3|p.S297Lfs*6|1|0.02|ENSG00000117461|chr1:46055848-46055849|-/ACCTCTGCCTCCCAGG|frameshift_variant;PIK3R3|p.S297Afs*7|1|0.03|ENSG00000117461|chr1:46055847-46055848|-/GC|frameshift_variant;nc|ENSG00000117461|Q92569-3|PIK3R3;nc|ENSG00000117461|Q92569-2|PIK3R3;ENSG00000117461|ENST00000262741|PIK3R3	ENSG00000145675|ENST00000521381|PIK3R1	ENSG00000145675|ENST00000521381|PIK3R1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	524.277106	1046.53966	-0.64481	-0.00033806	-0.21598	-0.00011324	-0.86079	-0.00045129	524.2769451975859	74.787	0.38635	71.556	71.434	71.82	-3.2308	0.15605	-0.0008732	NaN	148.99	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23960			2363	5235	1708	1717							0.018251525805908386
AQYSDDVKV	9	Unmodified	_AQYSDDVKV_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;COL6A3|p.T1393Cfs*9|1|0.09|ENSG00000163359|chr2:237371828-237371840|GCTCCCGGAAGGT/-|frameshift_variant;COL6A3|p.K1001Nfs*34|1|0.23|ENSG00000163359|chr2:237376800-237376839|TTTTAAGAGATTCACTATCTGTGGATGAAGATCTCCAATC/-|frameshift_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	512.7527465820312	2	512.750921	1023.48729	-0.054587	-2.799E-05	-0.24291	-0.00012455	-0.2975	-0.00015254	512.7507024506617	60.928	0.85504	60.928	60.646	61.501	0					44	19	4	0	0	0	0.017173	2	5333	5333;5362		150.36	70.649	1	9525300			2364	6293	1709	1718	3491;3492	3491					-0.023514305530056845
ARAAKSRI	8	Unmodified	_ARAAKSRI_					0	0	0			REV__ENSG00000100218|ENST00000216036|RSPH14	REV__ENSG00000100218|ENST00000216036|RSPH14	MULTI-MSMS	OvCa9_classI_Rep2	2	436.77484130859375	2	436.774868	871.535184	-1.3218	-0.00057733	1.2921	0.00056437	-0.029689	-1.2967E-05	436.77534043072393	144.04	2.131	143.81	143.2	145.33	-0.22697					119	42	4	0	0	0	0.73938	1	14498	14498		31.955	6.5047	1	537180	+		2365	17380	1710	1719	3493	3493					0.09427732948381617
ARAALLRPSFI	11	Unmodified	_ARAALLRPSFI_					0	0	0		ENSG00000224470|ENST00000427980|ATXN1L	ENSG00000224470|ENST00000427980|ATXN1L	ENSG00000224470|ENST00000427980|ATXN1L	MULTI-MSMS	OvCa9_classI_Rep3	3	405.9187927246094	3	405.583785	1213.72953	1.6628	0.00067442	-0.73825	-0.00029942	0.92458	0.00037499	405.5831216090262	68.754	1.6998	65.94	65.511	67.211	-2.8144					78	33	4	0	0	0	0.6112	1	3003	3003		43.651	4.8972	1	296870			2366	9256	1711	1720	3494	3494					0.13121064313645547
ARAALLRPSFI	11	Unmodified	_ARAALLRPSFI_					0	0	0		ENSG00000224470|ENST00000427980|ATXN1L	ENSG00000224470|ENST00000427980|ATXN1L	ENSG00000224470|ENST00000427980|ATXN1L	MULTI-MATCH	OvCa9_classI_Rep2	2		3	405.583785	1213.72953	0.18411	7.4672E-05	0.72391	0.00029361	0.90802	0.00036828	405.5836744987681	68.282	1.338	65.661	65.327	66.665	-2.6203	-0.13933	0.0011345	NaN	43.651	53	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181430			2367	9256	1711	1720							0.13121064313645547
ARAASLRRLTP	11	Unmodified	_ARAASLRRLTP_					0	0	0		ENST00000382882.7_2_4:2011010-2011436:-|nuORF	ENST00000382882.7_2_4:2011010-2011436:-|nuORF	ENST00000382882.7_2_4:2011010-2011436:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3703002929688	2	606.370195	1210.72584	-2.264	-0.0013728	1.1871	0.00071982	-1.0769	-0.00065302	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.69735	1	12559	12559		30.569	2.4874	1	205770			2368	11180	1712	1721	3495	3495					0.12890394539795125
ARAASLRRLTP	11	Unmodified	_ARAASLRRLTP_					0	0	0		ENST00000382882.7_2_4:2011010-2011436:-|nuORF	ENST00000382882.7_2_4:2011010-2011436:-|nuORF	ENST00000382882.7_2_4:2011010-2011436:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3710327148438	2	606.370195	1210.72584	-2.0217	-0.0012259	1.0061	0.00061009	-1.0156	-0.00061581	606.3706888805716	149.57	2.6994	148.14	147.52	150.22	-1.4344					165	58	4	0	0	0	0.72473	1	14871	14871		19.104	0.57247	1	304910			2369	11180	1712	1721	3496	3496					0.12890394539795125
ARAAVSPQKRK	11	Unmodified	_ARAAVSPQKRK_					0	0	0		ENSG00000174744|ENST00000359957|BRMS1	ENSG00000174744|ENST00000359957|BRMS1	ENSG00000174744|ENST00000359957|BRMS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.369140625	2	606.370195	1210.72584	-0.26856	-0.00016285	-0.5906	-0.00035812	-0.85916	-0.00052097	606.369699493104	145.24	3.8933	143.8	141.64	145.53	-1.4357					226	74	4	0	0	0	0.72324	1	14283	14283		21.686	1.689	1	336140			2370	7487	1713	1722	3497	3497					0.12890394539772387
ARADLRRGLPL	11	Unmodified	_ARADLRRGLPL_					0	0	0			REV__ENST00000343916.7_1_20:61472127-61472319:+|nuORF	REV__ENST00000343916.7_1_20:61472127-61472319:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	619.3824462890625	2	619.37802	1236.74149	0.48669	0.00030145	3.5929	0.0022254	4.0796	0.0025268	619.3802041761261	103.23	1.6041	103.23	102.93	104.54	0					95	37	4	0	0	0	0.52842	1	11550	11550		51.193	3.2332	1	5898300	+		2371	24674	1714	1723	3498	3498					0.1325868105684549
ARAELEMRL	9	Unmodified	_ARAELEMRL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.K1766Qfs*38|1|0.11|ENSG00000137497|chr11:72007356-72007357|-/G|frameshift_variant;NUMA1|p.F1195Sfs*43|1|0.13|ENSG00000137497|chr11:72013921-72013921|G/-|frameshift_variant	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	OvCa99_classI_Rep5	1	544.7991333007812	2	544.797683	1087.58081	-0.17576	-9.5754E-05	0.65474	0.0003567	0.47898	0.00026095	544.7977653827032	71.503	1.0183	71.503	71.068	72.086	0					40	23	3	0	0	0	0.0441	1	6919	6919		123.21	43.496	1	3095100			2372	4591	1715	1724	3499	3499					0.04052590348442209
ARAERDVVY	9	Unmodified	_ARAERDVVY_					0	0	0			REV__ENST00000587861.5_1_19:10822805-10823081:+|nuORF	REV__ENST00000587861.5_1_19:10822805-10823081:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.862060546875	2	539.78563	1077.55671	1.6198	0.00087436	1.3111	0.00070772	2.9309	0.0015821	539.78599463073	136.65	0.43085	135.11	134.89	135.32	-1.5437					12	8	2	0	0	0	0.027462	1	13244	13244		24.203	0	1	22593	+		2373	25604	1716	1725	3500	3500					0.02103073186435722
ARAEVQLIL	9	Unmodified	_ARAEVQLIL_					0	0	0		chr19:36112123-36114015|147|11.39|0.22|5.67|-|0|None,POLR2I|1	chr19:36112123-36114015|147|11.39|0.22|5.67|-|0|None,POLR2I|1	chr19:36112123-36114015|147|11.39|0.22|5.67|-|0|None,POLR2I|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.8111572265625	2	506.811116	1011.60768	-0.91945	-0.00046599	-1.1845	-0.0006003	-2.1039	-0.0010663	506.81048510289196	101.22	3.3613	98.954	98.29	101.65	-2.2665					172	65	4	0	0	0	0.53483	1	9155	9155		39.253	3.6345	1	2669900			2374	415	1717	1726	3501	3501					0.10234022231293238
ARAFCCRSR	9	Unmodified	_ARAFCCRSR_					0	0	0		ENSG00000189051|ENST00000399398|RNF222	ENSG00000189051|ENST00000399398|RNF222	ENSG00000189051|ENST00000399398|RNF222	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.3212280273438	2	535.260745	1068.50694	-1.6024	-0.00085769	0.73442	0.00039311	-0.86797	-0.00046459	535.2609663204428	55.751	1.368	52.456	51.803	53.171	-3.2944					60	26	3	0	0	0	0.027462	1	3472	3472		24.203	0	1	159770			2375	8528	1718	1727	3502	3502					-0.024576562948823266
ARAFSAVKVK	10	Unmodified	_ARAFSAVKVK_					0	0	0		ENSG00000167098|ENST00000356173|SUN5	ENSG00000167098|ENST00000356173|SUN5	ENSG00000167098|ENST00000356173|SUN5	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.3010864257812	2	538.832383	1075.65021	1.9296	0.0010397	0.51061	0.00027513	2.4402	0.0013149	538.8324743440826	78.755	0.66076	78.755	78.294	78.955	0					24	15	2	0	0	0	0.026849	1	7942	7942		32.812	8.6097	1	931730			2376	6753	1719	1728	3503	3503					0.11541417359512707
ARAGKSPGTL	10	Unmodified	_ARAGKSPGTL_					0	0	0		ENSG00000198796|ENST00000361673|ALPK2;ENST00000589204.1_1_18:56196243-56204256:-|nuORF	ENSG00000198796|ENST00000361673|ALPK2	ENSG00000198796|ENST00000361673|ALPK2	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.28106689453125	2	479.277441	956.540328	1.2379	0.0005933	2.8882	0.0013843	4.1261	0.0019776	479.2787787537371	96.937	2.2657	94.512	93.76	96.025	-2.4256					110	44	4	0	0	0	0.49595	1	8625	8625		54.722	3.3869	1	2968100			2377	8875	1720	1729	3504	3504					0.06031992020336929
ARAGSVRLI	9	Unmodified	_ARAGSVRLI_					0	0	0		chr3:52232117-52235045|145|13.8|0.3|5.52|-|0|TWF2,None|1;ENSG00000247596|ENST00000305533|TWF2	chr3:52232117-52235045|145|13.8|0.3|5.52|-|0|TWF2,None|1	chr3:52232117-52235045|145|13.8|0.3|5.52|-|0|TWF2,None|1	MULTI-MSMS	OvCa99_classI_Rep5	1	471.7961730957031	2	471.795801	941.577048	-0.065474	-3.089E-05	-0.27214	-0.0001284	-0.33762	-0.00015929	471.7955245971064	53.02	0.99528	53.02	52.697	53.692	0					48	22	4	0	0	0	0.29519	1	4214	4214		63.534	1.4264	1	5298900			2378	488	1721	1730	3505	3505					0.10392288636899139
ARAGVALRRGP	11	Unmodified	_ARAGVALRRGP_					0	0	0		ENST00000380486.3_2_21:43362334-43373797:-|nuORF	ENST00000380486.3_2_21:43362334-43373797:-|nuORF	ENST00000380486.3_2_21:43362334-43373797:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3453979492188	2	562.343981	1122.67341	2.5554	0.001437	-3.6335	-0.0020433	-1.0782	-0.0006063	562.341833951132	139.43	3.4203	137.93	136.47	139.89	-1.4952					166	69	3	0	0	0	0.69455	1	13542	13542		31.53	4.7337	1	141360			2379	11145	1722	1731	3506	3506					0.11697856196815337
ARAIQRKPNP	10	Unmodified	_ARAIQRKPNP_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;TRIP12-MFI2|1|fusion	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8433837890625	2	575.843813	1149.67307	-4.018	-0.0023138	2.8816	0.0016594	-1.1364	-0.0006544	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.72319	2	12168	12032;12168		27.882	2.3082	1	445630			2380	5697	1723	1732	3507;3508	3508					0.10422436476983421
ARAIQRKPNP	10	Unmodified	_ARAIQRKPNP_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;TRIP12-MFI2|1|fusion	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8431396484375	2	575.843813	1149.67307	-0.33973	-0.00019563	-0.25402	-0.00014628	-0.59375	-0.00034191	575.8433458482052	142.38	3.7668	140.93	139.05	142.82	-1.4532					179	72	3	0	0	0	0.66721	1	13878	13878		34.173	1.422	1	165140			2381	5697	1723	1732	3509	3509					0.10422436476983421
ARAIVRDPKIL	11	Unmodified	_ARAIVRDPKIL_					0	0	0		ENSG00000073734|ENST00000650372|ABCB11	ENSG00000073734|ENST00000650372|ABCB11	ENSG00000073734|ENST00000650372|ABCB11	MSMS	OvCa9_classI_Rep3	3	626.3939819335938	2	626.398422	1250.78229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	164.56	1	163.15	162.65	163.65	-1.4083								0	0	0	0.19474	1	14355	14355		10.265	0.5596	1				2382	1499	1724	1733	3510	3510					0.16693022376466615
ARAKLLSEN	9	Unmodified	_ARAKLLSEN_					0	0	0			REV__ENSG00000100625|ENST00000216513|SIX4	REV__ENSG00000100625|ENST00000216513|SIX4	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2903747558594	2	501.290548	1000.56654	-1.4695	-0.00073667	1.3149	0.00065914	-0.15466	-7.7529E-05	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.65371	1	11269	11269		25.574	7.2496	1	97838	+		2383	17439	1725	1734	3511	3511					0.06628261191792717
ARAKMKRGT	9	Unmodified	_ARAKMKRGT_					0	0	0			REV__nc|ENSG00000106078|O75128-3|COBL	REV__nc|ENSG00000106078|O75128-3|COBL	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.8041076660156	2	509.80056	1017.58657	2.0238	0.0010317	4.2429	0.0021631	6.2667	0.0031948	509.80258654056354	136.53	4.9049	134.99	133.61	138.51	-1.5437					290	101	5	0	0	0	0.61208	1	13409	13409		30.504	0.18592	1	173450	+		2384	28782	1726	1735	3512	3512					0.07847733650783084
ARAKQEAAMDE	11	Unmodified	_ARAKQEAAMDE_					0	0	0			REV__tr|A0A7D6VN34|A0A7D6VN34_9CLOTManganesecatalasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17250PE=3SV=1	REV__tr|A0A7D6VN34|A0A7D6VN34_9CLOTManganesecatalasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17250PE=3SV=1	MSMS	OvCa99_classI_Rep5	1	610.2908325195312	2	610.290419	1218.56629	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.554	1	98.554	98.054	99.054	0								0	0	0	0.19317	1	10860	10860		40.058	1.3046	1		+		2385	31158	1727	1736	3513	3513					-0.034255265903766485
ARALRLLLV	9	Unmodified	_ARALRLLLV_					0	0	0		ENSG00000255690|ENST00000539664|TRIL	ENSG00000255690|ENST00000539664|TRIL	ENSG00000255690|ENST00000539664|TRIL	MULTI-MSMS	OvCa99_classI_Rep5	1	512.8541259765625	2	512.853119	1023.69168	2.3338	0.0011969	-0.48805	-0.0002503	1.8458	0.00094662	512.8527581511023	95.894	1.3896	95.894	95.577	96.966	0					78	32	4	0	0	0	0.53957	1	10493	10493		38.806	1.7777	1	8035900			2386	9460	1728	1737	3514	3514					0.18078598118847822
ARAMGVEAAL	10	Unmodified	_ARAMGVEAAL_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.7676696777344	2	494.765852	987.51715	0.032511	1.6086E-05	-0.47423	-0.00023463	-0.44172	-0.00021855	494.7654705234626	78.054	1.1953	75.238	74.777	75.973	-2.8165					55	24	4	0	0	0	0.49558	1	6263	6263		54.776	4.7518	1	863990	+		2387	29089	1729	1738	3515	3515					0.022892299113323133
ARANCKKF	8	Unmodified	_ARANCKKF_					0	0	0		nc|ENSG00000112742|P33981-2|TTK;chr6:80022472-80026381|411|14.54|0.51|4.83|+|ENST00000509894|TTK,TTK;ENSG00000112742|ENST00000369798|TTK;TTK|p.K344Efs*3|1|0.22|ENSG00000112742|chr6:80014506-80014507|AA/-|frameshift_variant;ENST00000430061.2_1_6:80715671-80721208:+|nuORF	nc|ENSG00000112742|P33981-2|TTK	nc|ENSG00000112742|P33981-2|TTK	MULTI-MSMS	OvCa9_classI_Rep4_	4	469.2598876953125	2	469.255454	936.496355	1.5294	0.00071767	3.2998	0.0015485	4.8292	0.0022661	469.25689536833306	86.653	0.58702	84.026	83.713	84.3	-2.6269					28	11	3	0	0	0	0.66704	1	7342	7342		50.025	0	1	381110			2388	520	1730	1739	3516	3516					0.025566843223487012
ARAPAAAPALR	11	Unmodified	_ARAPAAAPALR_					0	0	0		ENST00000282096.8_1_11:14665308-14793517:+|nuORF	ENST00000282096.8_1_11:14665308-14793517:+|nuORF	ENST00000282096.8_1_11:14665308-14793517:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.8212890625	2	532.819807	1063.62506	-1.9144	-0.00102	1.4816	0.00078941	-0.43286	-0.00023064	532.8205063717674	55.43	1.2675	52.135	51.803	53.07	-3.2944					54	24	3	0	0	0	0.68021	1	3497	3497		36.447	4.9169	1	622250			2389	10054	1731	1740	3517	3517					0.09579362556905835
ARAPAPRPRA	10	Unmodified	_ARAPAPRPRA_					0	0	0		ENSG00000170846|ENST00000635031|unknown;ENST00000307533.10_1_4:6675831-6676296:+|nuORF	ENSG00000170846|ENST00000635031|unknown	ENSG00000170846|ENST00000635031|unknown	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8162841796875	2	531.817599	1061.62064	-1.6193	-0.00086116	0.29076	0.00015463	-1.3285	-0.00070653	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.78463	1	11309	11309		20.947	0	1	178650			2390	7143	1732	1741	3518	3518					0.09229898134049108
ARAPGTRTL	9	Unmodified	_ARAPGTRTL_					0	0	0		nc|ENSG00000173171|Q13505-3|MTX1;ENSG00000173171|ENST00000368376|MTX1;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF	nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF	nc|ENSG00000173171|Q13505-3|MTX1	MULTI-MSMS	OvCa99_classI_Rep5	1	471.7776184082031	2	471.777608	941.540663	-0.91128	-0.00042992	0.68476	0.00032306	-0.22651	-0.00010686	471.7778246939605	34.375	0.89104	34.375	34.161	35.052	0					34	18	2	0	0	0	0.24951	1	1656	1656		68.787	0	1	919670			2391	7355;12551	1733	1742	3519	3519					0.0675541174019827
ARAPRAASLRV	11	Unmodified	_ARAPRAASLRV_					0	0	0		ENST00000400087.7_1_21:27102104-27107872:-|nuORF;ENST00000400093.3_1_21:27107512-27107872:-|nuORF	ENST00000400087.7_1_21:27102104-27107872:-|nuORF	ENST00000400087.7_1_21:27102104-27107872:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	584.356201171875	2	584.357088	1166.69962	-2.312	-0.0013511	1.1487	0.00067126	-1.1633	-0.0006798	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.7046	1	14734	14734		28.081	2.5074	1	180810			2392	11402	1734	1743	3520	3520					0.12294125368271125
ARAPRAASLRV	11	Unmodified	_ARAPRAASLRV_					0	0	0		ENST00000400087.7_1_21:27102104-27107872:-|nuORF;ENST00000400093.3_1_21:27107512-27107872:-|nuORF	ENST00000400087.7_1_21:27102104-27107872:-|nuORF	ENST00000400087.7_1_21:27102104-27107872:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	584.356689453125	2	584.357088	1166.69962	-4.6254	-0.0027029	3.4374	0.0020087	-1.1881	-0.00069425	584.3589865391973	145.25	4.5766	144.28	142.9	147.48	-0.97299					233	91	4	0	0	0	0.70761	1	12301	12301		27.047	1.4733	1	156220			2393	11402	1734	1743	3521	3521					0.12294125368271125
ARAPRAASLRV	11	Unmodified	_ARAPRAASLRV_					0	0	0		ENST00000400087.7_1_21:27102104-27107872:-|nuORF;ENST00000400093.3_1_21:27107512-27107872:-|nuORF	ENST00000400087.7_1_21:27102104-27107872:-|nuORF	ENST00000400087.7_1_21:27102104-27107872:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3565063476562	2	584.357088	1166.69962	-0.5033	-0.0002941	-0.35635	-0.00020823	-0.85964	-0.00050234	584.3567763295431	142.42	4.015	140.98	138.81	142.83	-1.4427					242	77	4	0	0	0	0.72324	1	13908	13908		21.686	0	1	214670			2394	11402	1734	1743	3522	3522					0.12294125368271125
ARAPRAASLRV	11	Unmodified	_ARAPRAASLRV_					0	0	0		ENST00000400087.7_1_21:27102104-27107872:-|nuORF;ENST00000400093.3_1_21:27107512-27107872:-|nuORF	ENST00000400087.7_1_21:27102104-27107872:-|nuORF	ENST00000400087.7_1_21:27102104-27107872:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3562622070312	2	584.357088	1166.69962	-1.7162	-0.0010029	0.61767	0.00036094	-1.0985	-0.00064192	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.68399	1	14361	14361		35.152	3.6222	1	833330			2395	11402	1734	1743	3523	3523					0.12294125368271125
ARAQALVLALT	11	Unmodified	_ARAQALVLALT_					0	0	0		nc|ENSG00000060656|Q92729-3|PTPRU;ENSG00000060656|ENST00000373779|PTPRU;nc|ENSG00000060656|Q92729-4|PTPRU;nc|ENSG00000060656|Q92729|PTPRU	nc|ENSG00000060656|Q92729-3|PTPRU	nc|ENSG00000060656|Q92729-3|PTPRU	MULTI-MSMS	OvCa99_classI_Rep5	1	563.846923828125	2	563.850773	1125.68699	0.19301	0.00010883	-2.9609	-0.0016695	-2.7679	-0.0015607	563.8490368801505	30.011	0.35153	30.011	29.835	30.186	0					16	6	3	0	0	0	0.67529	1	1117	1117		37.812	2.6595	1	205140			2396	1262	1735	1744	3524	3524					0.12917669185389968
ARARARLPVTT	11	Unmodified	_ARARARLPVTT_					0	0	0		nc|ENSG00000128284|O95236-3|APOL3;ENSG00000128284|ENST00000424878|APOL3;nc|ENSG00000128284|O95236|APOL3	nc|ENSG00000128284|O95236-3|APOL3	nc|ENSG00000128284|O95236-3|APOL3	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3699340820312	2	606.370195	1210.72584	-0.26856	-0.00016285	-0.5906	-0.00035812	-0.85916	-0.00052097	606.369699493104	145.24	3.8933	143.8	141.64	145.53	-1.4357					226	74	4	0	0	0	0.71789	1	14084	14084		23.523	7.5159	1	336140			2397	3874	1736	1745	3525	3525					0.12890394539772387
ARARFWAE	8	Unmodified	_ARARFWAE_					0	0	0		ENST00000397728.7_1_21:47609640-47609970:-|nuORF	ENST00000397728.7_1_21:47609640-47609970:-|nuORF	ENST00000397728.7_1_21:47609640-47609970:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	504.27947998046875	2	503.764501	1005.51445	-1.7287	-0.00087085	3.4559	0.001741	1.7272	0.00087011	503.766069999723	51.503	1.587	48.69	48.055	49.642	-2.8129					38	31	2	0	0	0	0.028476	1	3312	3312		23.042	0	1	25122			2398	11353	1737	1746	3526	3526					0.01191142568700343
ARASLAPLGRR	11	Unmodified	_ARASLAPLGRR_					0	0	0			REV__ENST00000309575.4_1_3:142838740-142838905:+|nuORF	REV__ENST00000309575.4_1_3:142838740-142838905:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3558349609375	2	584.357088	1166.69962	-1.7162	-0.0010029	0.61767	0.00036094	-1.0985	-0.00064192	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.68757	1	14282	14282		33.922	9.4024	1	833330	+		2399	24325	1738	1747	3527	3527					0.12294125368293862
ARATDPHVPTL	11	Unmodified	_ARATDPHVPTL_					0	0	0			REV__ENST00000267079.6_1_12:53881161-53893393:-|nuORF	REV__ENST00000267079.6_1_12:53881161-53893393:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.7911987304688	2	589.319837	1176.62512	1.3579	0.00080026	-0.022576	-1.3305E-05	1.3354	0.00078696	589.3197478113127	113.88	0.81181	113.88	113.61	114.42	0					34	17	3	0	0	0	0.025344	1	13041	13041		41.427	0	1	223390	+		2400	24047	1739	1748	3528	3528					0.0438731776628174
ARAVRLALD	9	Unmodified	_ARAVRLALD_					0	0	0			REV__ENST00000550178.1_1_12:120933958-120934105:+|nuORF	REV__ENST00000550178.1_1_12:120933958-120934105:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.3180847167969	2	492.801083	983.587613	0.020413	1.006E-05	-2.095	-0.0010324	-2.0746	-0.0010223	492.7994845331669	105.03	1.3102	103	102.72	104.03	-2.0369					36	25	2	0	0	0	0.027455	1	9566	9566		42.396	0	1	260860	+		2401	27466	1740	1749	3529	3529					0.09516271291306566
ARCLALDLQQN	11	Unmodified	_ARCLALDLQQN_					0	0	0			REV__nc|ENSG00000120802|P42166|TMPO	REV__nc|ENSG00000120802|P42166|TMPO	MULTI-SECPEP	OvCa9_classI_Rep2	2	415.260986328125	3	415.552045	1243.63431	-0.96173	-0.00039965	-3.0841	-0.0012816	-4.0458	-0.0016813	415.8848137631155	34.545	0.24773	31.835	31.612	31.86	-2.7097					6	4	2	0	0	0	0.026145	1	1326	1326		17.833	0.6664	1	5823.8	+		2402	28818	1741	1750	3530	3530					0.022233430603137094
ARDFILKLY	9	Unmodified	_ARDFILKLY_					0	0	0		ENSG00000156049|ENST00000341700|GNA14	ENSG00000156049|ENST00000341700|GNA14	ENSG00000156049|ENST00000341700|GNA14	MULTI-MSMS	OvCa9_classI_Rep3	3	569.8353881835938	2	569.834591	1137.65463	-0.6563	-0.00037398	-0.12934	-7.3703E-05	-0.78564	-0.00044768	569.8345222869018	99.284	4.3485	97.599	97.322	101.67	-1.685					272	84	6	0	0	0	0.3076	1	6828	6828		62.107	10.915	1	12084000			2403	5817	1742	1751	3531	3531					0.09130881782425604
ARDGKLLP	8	Unmodified	_ARDGKLLP_					0	0	0		nc|ENSG00000110435|O00330-3|PDHX;ENSG00000110435|ENST00000227868|PDHX;ENST00000477173.3_1_11:35006185-35041800:+|nuORF;nc|ENSG00000110435|O00330-2|PDHX	nc|ENSG00000110435|O00330-3|PDHX	nc|ENSG00000110435|O00330-3|PDHX	MULTI-SECPEP	OvCa9_classI_Rep4_	4	435.75701904296875	2	435.263802	868.513051	0.050285	2.1887E-05	0.40529	0.00017641	0.45557	0.00019829	435.26399479047916	62.981	1.105	59.506	59.193	60.298	-3.475					54	22	4	0	0	0	0.028476	1	4373	4373		30.504	0	1	153610			2404	2775	1743	1752	3532	3532					0.07353508479945958
ARDGKLLP	8	Unmodified	_ARDGKLLP_					0	0	0		nc|ENSG00000110435|O00330-3|PDHX;ENSG00000110435|ENST00000227868|PDHX;ENST00000477173.3_1_11:35006185-35041800:+|nuORF;nc|ENSG00000110435|O00330-2|PDHX	nc|ENSG00000110435|O00330-3|PDHX	nc|ENSG00000110435|O00330-3|PDHX	MULTI-MATCH	OvCa9_classI_Rep2	2		2	435.263802	868.513051	-1.3168	-0.00057316	3.0776	0.0013396	1.7608	0.0007664	435.2652022120251	62.231	0.49399	59.472	59.137	59.631	-2.7593	-0.017154	0.0018427	NaN	30.504	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17945			2405	2775	1743	1752							0.07353508479945958
ARDGSAFITL	10	Unmodified	_ARDGSAFITL_					0	0	0		S1PR2|p.E109D|1|0.16|ENSG00000267534|chr19:10224579-10224579|C/A|missense_variant	S1PR2|p.E109D|1|0.16|ENSG00000267534|chr19:10224579-10224579|C/A|missense_variant	S1PR2|p.E109D|1|0.16|ENSG00000267534|chr19:10224579-10224579|C/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.3040771484375	2	525.782556	1049.55056	-0.25698	-0.00013512	0.84793	0.00044583	0.59095	0.00031071	525.7828977806969	62.187	0.87702	62.187	61.826	62.703	0					42	20	3	0	0	0	0.026931	1	5474	5474		30.318	10.958	1	3186900			2406	32796	1744	1753	3533	3533					0.027765549549030766
ARDLQCPK	8	Unmodified	_ARDLQCPK_					0	0	0		ENSG00000178026|ENST00000318753|LRRC75B;ENST00000464490.1_1_22:24985500-24985914:-|nuORF	ENSG00000178026|ENST00000318753|LRRC75B	ENSG00000178026|ENST00000318753|LRRC75B	MULTI-MSMS	OvCa99_classI_Rep5	1	465.7444763183594	2	465.744919	929.475285	1.8634	0.00086789	-3.0878	-0.0014381	-1.2243	-0.00057023	465.74331450609435	87.24	0.94852	87.24	87.013	87.962	0					65	22	4	0	0	0	0.59904	1	9251	9251		64.207	5.4253	1	5621200			2407	7727	1745	1754	3534	3534					0.007726742228214789
ARDNTINLI	9	Unmodified	_ARDNTINLI_					0	0	0		ENSG00000163466|ENST00000315717|ARPC2	ENSG00000163466|ENST00000315717|ARPC2	ENSG00000163466|ENST00000315717|ARPC2	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.7742309570312	2	515.288005	1028.56146	0.24282	0.00012512	2.7903	0.0014378	3.0331	0.0015629	515.7900964624242	109.64	0.19778	109.46	109.31	109.51	-0.17237					5	3	2	0	0	0	0.027462	1	10294	10294		37.812	0	1	8985.8			2408	6310	1746	1755	3535	3535					0.04831957329179204
ARDVIQLV	8	Unmodified	_ARDVIQLV_					0	0	0			REV__ENST00000318121.7_1_1:36230827-36230911:-|nuORF	REV__ENST00000318121.7_1_1:36230827-36230911:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.55792236328125	2	457.276909	912.539266	-0.33932	-0.00015516	0.43263	0.00019783	0.093312	4.267E-05	457.2767701590724	54.835	0.77185	54.835	54.293	55.064	0					25	17	3	0	0	0	0.028476	1	4446	4446		29.15	7.1897	1	251860	+		2409	24421	1747	1756	3536	3536					0.07949777651435852
AREEAVGV	8	Unmodified	_AREEAVGV_					0	0	0		ENSG00000139549|ENST00000649637|DHH	ENSG00000139549|ENST00000649637|DHH	ENSG00000139549|ENST00000649637|DHH	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.2493896484375	2	415.721967	829.429381	0.29266	0.00012167	-2.451	-0.0010189	-2.1583	-0.00089726	415.72067854419413	53.981	0.7337	53.981	53.519	54.253	0					26	17	2	0	0	0	0.028476	1	4342	4342		42.396	0	1	514930			2410	4782	1748	1757	3537	3537					0.007843523122346596
AREEPPLER	9	Unmodified	_AREEPPLER_					0	0	0			REV__nc|ENSG00000198947|P11532-3|DMD	REV__nc|ENSG00000198947|P11532-3|DMD	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7692260742188	2	548.790912	1095.56727	-0.80784	-0.00044334	0.75146	0.00041239	-0.056382	-3.0942E-05	548.7912428681739	25.617	0.25068	25.617	25.442	25.693	0					7	4	2	0	0	0	0.027462	1	572	572		14.137	1.9303	1	132220	+		2411	23099	1749	1758	3538	3538					0.023310558408411453
AREHHIPCPE	10	Unmodified	_AREHHIPCPE_					0	0	0		ENSG00000144339|ENST00000272771|TMEFF2;nc|ENSG00000144339|Q9UIK5-2|TMEFF2	ENSG00000144339|ENST00000272771|TMEFF2	ENSG00000144339|ENST00000272771|TMEFF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.8390502929688	2	594.782564	1187.55058	1.1735	0.000698	-2.8236	-0.0016794	-1.65	-0.00098141	594.7810362284903	101.94	0.34515	101.94	101.82	102.17	0					10	7	2	0	0	0	0.026956	1	11374	11374		34.173	10.65	1	141430			2412	5143	1750	1759	3539	3539					-0.03569768316720001
AREKAENRV	9	Unmodified	_AREKAENRV_					0	0	0		ENSG00000067900|ENST00000399799|ROCK1	ENSG00000067900|ENST00000399799|ROCK1	ENSG00000067900|ENST00000399799|ROCK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.2929077148438	2	536.796529	1071.5785	-1.1723	-0.00062929	-2.4709	-0.0013264	-3.6432	-0.0019557	536.7954734537793	77.318	1.1178	74.502	74.194	75.312	-2.8165					40	22	4	0	0	0	0.027459	1	6176	6176		62.107	3.3255	1	676470			2413	1383	1751	1760	3540	3540					0.045578779349852994
ARELDREALL	10	Unmodified	_ARELDREALL_					0	0	0			REV__nc|ENSG00000106665|Q9UDT6-2|CLIP2	REV__nc|ENSG00000106665|Q9UDT6-2|CLIP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.3524169921875	2	593.332944	1184.65134	-0.36547	-0.00021684	-1.275	-0.0007565	-1.6405	-0.00097334	593.3314386679796	54.653	0.29946	54.653	54.505	54.805	0					8	6	2	0	0	0	0.027118	1	4441	4441		19.104	0	1	134390	+		2414	17819	1752	1761	3541	3541					0.06639586937740205
ARELQQVLD	9	Unmodified	_ARELQQVLD_					0	0	0			REV__ENST00000324309.8_1_4:24833126-24981729:-|nuORF	REV__ENST00000324309.8_1_4:24833126-24981729:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.7981567382812	2	536.293288	1070.57202	2.0769	0.0011138	1.456	0.00078082	3.5329	0.0018947	536.295129300186	100.2	0.33888	100.2	100.11	100.44	0					16	7	3	0	0	0	0.027432	1	11101	11101		58.23	8.7884	1	337670	+		2415	22256	1753	1762	3542	3542					0.039559399836207376
ARENREHH	8	Unmodified	_ARENREHH_					0	0	0		ENST00000393844.5_1_6:44195016-44197375:+|nuORF	ENST00000393844.5_1_6:44195016-44197375:+|nuORF	ENST00000393844.5_1_6:44195016-44197375:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.31103515625	2	524.755195	1047.49584	1.1699	0.00061392	0.96907	0.00050852	2.139	0.0011224	524.7548441693353	148.98	0.63271	148.98	148.77	149.4	0					16	12	2	0	0	0	0.028476	1	17445	17445		55.504	0.72789	1	16816			2416	11255	1754	1763	3543	3543					-0.026010190731540206
ARENRFMEYSW	11	Unmodified	_ARENRFMEYSW_					0	0	0			REV__nc|ENSG00000278540|Q13085-3|ACACA	REV__nc|ENSG00000278540|Q13085-3|ACACA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.7629089355469	3	496.894471	1487.66158	-0.51547	-0.00025613	2.7617	0.0013723	2.2462	0.0011161	497.2297648679081	74.302	0.28769	71.071	70.952	71.24	-3.2308					7	5	2	0	0	0	0.026277	1	5803	5803		12.957	0	1	46182	+		2417	23642	1755	1764	3544	3544					-0.06274173399310712
AREQGIILL	9	Unmodified	_AREQGIILL_					0	0	0		tr|A0A7D6ZIJ2|A0A7D6ZIJ2_9CLOTAdenosylcobinamide-GDPribazoletransferaseOS=ClostridiumintestinaleOX=36845GN=cobSPE=3SV=1	tr|A0A7D6ZIJ2|A0A7D6ZIJ2_9CLOTAdenosylcobinamide-GDPribazoletransferaseOS=ClostridiumintestinaleOX=36845GN=cobSPE=3SV=1	tr|A0A7D6ZIJ2|A0A7D6ZIJ2_9CLOTAdenosylcobinamide-GDPribazoletransferaseOS=ClostridiumintestinaleOX=36845GN=cobSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.8109436035156	2	506.811116	1011.60768	-0.91945	-0.00046599	-1.1845	-0.0006003	-2.1039	-0.0010663	506.81048510289196	101.22	3.3613	98.954	98.29	101.65	-2.2665					172	65	4	0	0	0	0.16524	1	9057	9057		82.305	10.927	1	2669900			2418	35616	1756	1765	3545	3545					0.10234022231293238
AREQPDSLVD	10	Unmodified	_AREQPDSLVD_					0	0	0			REV__ENSG00000168724|ENST00000648817|DNAJC21	REV__ENSG00000168724|ENST00000648817|DNAJC21	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.2999877929688	2	565.277835	1128.54112	2.6869	0.0015188	3.1757	0.0017951	5.8626	0.003314	565.2795214310614	101.08	0.79633	101.08	100.77	101.57	0					32	18	3	0	0	0	0.026968	1	11202	11202		29.17	0.020503	1	675640	+		2419	21395	1757	1766	3546	3546					-0.01801258121281535
ARESYSWP	8	Unmodified	_ARESYSWP_					0	0	0		ENST00000265245.9_1_3:194362482-194362794:-|nuORF	ENST00000265245.9_1_3:194362482-194362794:-|nuORF	ENST00000265245.9_1_3:194362482-194362794:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.2342834472656	2	498.232699	994.450845	3.2241	0.0016063	1.256	0.00062579	4.4801	0.0022321	498.2327304364051	133.65	1.7723	132.13	131.61	133.38	-1.5257					68	35	3	0	0	0	0.7043	1	12907	12907		42.474	1.9018	1	203580			2420	9949	1758	1767	3547	3547					-0.04660262659047021
AREVGLLAALL	11	Unmodified	_AREVGLLAALL_					0	0	0			REV__ENSG00000160932|ENST00000292494|LY6E	REV__ENSG00000160932|ENST00000292494|LY6E	MULTI-MSMS	OvCa9_classI_Rep2	2	563.3524169921875	2	563.353148	1124.69174	-0.51442	-0.0002898	-0.73977	-0.00041675	-1.2542	-0.00070655	563.3531834496299	116.13	2.03	116.01	115.64	117.67	-0.11777					126	40	5	0	0	0	0.092746	6	11091	11073;11079;11091;11121;11127;11133		98.629	9.0316	1	2302900	+		2421	20680	1759	1768	3548;3549;3550;3551;3552;3553	3550					0.1343855332820567
AREVGLLAALL	11	Unmodified	_AREVGLLAALL_					0	0	0			REV__ENSG00000160932|ENST00000292494|LY6E	REV__ENSG00000160932|ENST00000292494|LY6E	MULTI-MSMS	OvCa9_classI_Rep3	3	563.353515625	2	563.353148	1124.69174	-1.0854	-0.00061147	0.27756	0.00015637	-0.80785	-0.00045511	563.3535121729102	117.2	1.8826	116.17	115.84	117.73	-1.0324					63	37	2	0	0	0	0.21979	4	8788	8782;8788;8806;8812		77.318	8.3436	1	2467900	+		2422	20680	1759	1768	3554;3555;3556;3557	3555					0.1343855332820567
AREVGLLAALL	11	Unmodified	_AREVGLLAALL_					0	0	0			REV__ENSG00000160932|ENST00000292494|LY6E	REV__ENSG00000160932|ENST00000292494|LY6E	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.3525390625	2	563.353148	1124.69174	0.72344	0.00040755	-1.5701	-0.00088453	-0.84668	-0.00047698	563.3523799001858	117.47	3.3994	116.13	115.53	118.93	-1.3452					169	64	5	0	0	0	0.14417	2	10994	10970;10994		87.696	7.9839	1	2980000	+		2423	20680	1759	1768	3558;3559	3559					0.1343855332820567
AREYYELA	8	Unmodified	_AREYYELA_					0	0	0			REV__nc|ENSG00000185745|P09914-2|IFIT1	REV__nc|ENSG00000185745|P09914-2|IFIT1	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.8128662109375	2	507.748182	1013.48181	-0.88593	-0.00044983	-2.5747	-0.0013073	-3.4606	-0.0017571	507.74682622786224	57.459	0.89443	54.667	54.278	55.173	-2.792					27	17	2	0	0	0	0.028476	1	4095	4095		33.516	0	1	44066	+		2424	22526	1760	1769	3560	3560					-0.02439109344834378
ARFAFGLLKPK	11	Unmodified	_ARFAFGLLKPK_					0	0	0		tr|A0A553SJ74|A0A553SJ74_NIACINAD(P)-dependentalcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16250PE=4SV=1	tr|A0A553SJ74|A0A553SJ74_NIACINAD(P)-dependentalcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16250PE=4SV=1	tr|A0A553SJ74|A0A553SJ74_NIACINAD(P)-dependentalcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16250PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	624.3736572265625	2	624.384783	1246.75501	-5.6311	-0.003516	0.40465	0.00025266	-5.2264	-0.0032633	624.3848091037548	161.93	0.45972	161.71	161.48	161.94	-0.22696					14	8	2	0	0	0	0.026007	1	16512	16512		24.519	4.5224	1	11440			2425	33470	1761	1770	3561	3561					0.14150538836065607
ARFGLIQSM	9	Unmodified	_ARFGLIQSM_					0	0	0		nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000587765.1_1_19:38282509-38282806:+|nuORF;ENST00000545518.1_1_16:71950471-71955437:+|nuORF;nc|ENSG00000182149|P53990-3|IST1	nc|ENSG00000182149|P53990-2|IST1	nc|ENSG00000182149|P53990-2|IST1	MULTI-MSMS	OvCa99_classI_Rep5	1	511.7786865234375	2	511.776219	1021.53789	2.2285	0.0011405	0.646	0.00033061	2.8745	0.0014711	511.7765682657847	98.706	0.65331	98.706	98.461	99.115	0					23	15	2	0	0	0	0.035142	1	10880	10880		131.03	29.779	1	3347400			2426	7970	1762	1771	3562	3562					0.027978202910276195
ARFILQYAKSL	11	Unmodified	_ARFILQYAKSL_					0	0	0		tr|A0A553SMM5|A0A553SMM5_NIACIMBLfoldmetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_22815PE=4SV=1	tr|A0A553SMM5|A0A553SMM5_NIACIMBLfoldmetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_22815PE=4SV=1	tr|A0A553SMM5|A0A553SMM5_NIACIMBLfoldmetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_22815PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	437.25732421875	3	437.259079	1308.75541	-3.525	-0.0015413	-0.35709	-0.00015614	-3.8821	-0.0016975	437.25900137272055	155.13	2.0506	154.9	154.06	156.11	-0.22697					105	58	2	0	0	0	0.71831	1	15817	15817		23.378	1.6922	1	24211			2427	33850	1763	1772	3563	3563					0.11337913765282792
ARFILQYAKSL	11	Unmodified	_ARFILQYAKSL_					0	0	0		tr|A0A553SMM5|A0A553SMM5_NIACIMBLfoldmetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_22815PE=4SV=1	tr|A0A553SMM5|A0A553SMM5_NIACIMBLfoldmetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_22815PE=4SV=1	tr|A0A553SMM5|A0A553SMM5_NIACIMBLfoldmetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_22815PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	437.259079	1308.75541	-4.6807	-0.0020467	1.7595	0.00076937	-2.9212	-0.0012773	437.2600675854217	156.29	0.52435	154.8	154.54	155.06	-1.4911	-0.060251	0.0021548	NaN	23.378	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17759			2428	33850	1763	1772							0.11337913765282792
ARFLSGPVSV	10	Unmodified	_ARFLSGPVSV_					0	0	0		ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2	ENSG00000165238|ENST00000427277|WNK2	ENSG00000165238|ENST00000427277|WNK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.8121948242188	2	516.795466	1031.57638	-0.31694	-0.0001638	3.0218	0.0015617	2.7049	0.0013979	516.7969362819114	64.588	0.8558	64.588	64.334	65.19	0					28	20	2	0	0	0	0.026849	1	5932	5932		19.104	0	1	802300			2429	6538	1764	1773	3564	3564					0.06185449197187154
ARFNRPANL	9	Unmodified	_ARFNRPANL_					0	0	0		ENSG00000161940|ENST00000293805|BCL6B	ENSG00000161940|ENST00000293805|BCL6B	ENSG00000161940|ENST00000293805|BCL6B	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.8109741210938	2	529.796332	1057.57811	-1.2974	-0.00068735	-0.068895	-3.65E-05	-1.3663	-0.00072385	529.7958929573557	43.977	0.61045	43.977	43.694	44.305	0					27	13	3	0	0	0	0.027462	1	2929	2929		37.159	0	1	367000			2430	6144	1765	1774	3565	3565					0.05162503005794861
ARFSHIRNK	9	Unmodified	_ARFSHIRNK_					0	0	0			REV__ENSG00000147912|ENST00000432825|FBXO10	REV__ENSG00000147912|ENST00000432825|FBXO10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.8108520507812	2	564.822881	1127.63121	0.30082	0.00016991	0.042718	2.4128E-05	0.34354	0.00019404	564.8232877790374	92.467	1.0143	89.924	89.313	90.327	-2.5425					28	19	2	0	0	0	0.027462	1	7966	7966		30.318	21.624	1	36769	+		2431	20088	1766	1775	3566	3566					0.0724988078845854
ARFSHIRNK	9	Unmodified	_ARFSHIRNK_					0	0	0			REV__ENSG00000147912|ENST00000432825|FBXO10	REV__ENSG00000147912|ENST00000432825|FBXO10	MULTI-MATCH	OvCa9_classI_Rep3	3		2	564.822881	1127.63121	-1.2332	-0.00069655	2.2379	0.001264	1.0046	0.00056744	564.8239317980317	91.707	0.75287	89.683	89.382	90.135	-2.0241	-0.12073	0.0014323	NaN	41.427	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32081	+		2432	20088	1766	1775							0.0724988078845854
ARFYPLSL	8	Unmodified	_ARFYPLSL_					0	0	0		ENST00000477288.5_1_6:30884740-30893984:+|nuORF;nc|ENSG00000137411|Q5ST30-3|VARS2;ENSG00000137411|ENST00000676266|VARS2;nc|ENSG00000137411|Q5ST30-4|VARS2;ENST00000469358.5_1_6:30887456-30890206:+|nuORF	ENST00000477288.5_1_6:30884740-30893984:+|nuORF	ENST00000477288.5_1_6:30884740-30893984:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	482.7877502441406	2	483.774003	965.533452	-0.60209	-0.00029127	-2.7234	-0.0013175	-3.3255	-0.0016088	483.772216514396	58.159	0.85273	55.367	55.072	55.925	-2.792					25	16	2	0	0	0	0.028476	1	4239	4239		23.042	0	1	23878			2433	4581	1767	1776	3567	3567					0.04930679139749827
ARGAHGKK	8	Unmodified	_ARGAHGKK_					0	0	0		ENSG00000136542|ENST00000259056|GALNT5	ENSG00000136542|ENST00000259056|GALNT5	ENSG00000136542|ENST00000259056|GALNT5	MULTI-MSMS	OvCa9_classI_Rep4_	4	412.7456970214844	2	412.746111	823.477669	3.1505	0.0013004	-2.8121	-0.0011607	0.33847	0.0001397	412.74482870844463	135.72	2.2055	134.18	133.51	135.72	-1.5437					107	44	4	0	0	0	0.75661	1	13226	13226		19.36	4.6959	1	1010100			2434	4497	1768	1777	3568	3568					0.05886890742806372
ARGAPPKYPTD	11	Unmodified	_ARGAPPKYPTD_					0	0	0			REV__ENSG00000164976|ENST00000297625|MYORG	REV__ENSG00000164976|ENST00000297625|MYORG	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.802734375	2	586.806562	1171.59857	-6.8597	-0.0040253	0.93898	0.000551	-5.9207	-0.0034743	586.8069299890403	160.36	3.1265	158.75	158.28	161.4	-1.61					144	76	3	0	0	0	0.72473	1	15919	15919		19.104	0.77911	1	162470	+		2435	21045	1769	1778	3569	3569					0.019636288749325104
ARGEKLLRQPA	11	Unmodified	_ARGEKLLRQPA_					0	0	0			REV__nc|ENSG00000036565|P54219-2|SLC18A1	REV__nc|ENSG00000036565|P54219-2|SLC18A1	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8693237304688	2	619.870028	1237.7255	-3.1788	-0.0019704	2.28	0.0014133	-0.89873	-0.00055709	619.8711859647292	147.21	3.9856	146.98	144.83	148.82	-0.22696					207	79	4	0	0	0	0.72473	1	14825	14825		19.104	2.6304	1	163200	+		2436	16609	1770	1779	3570	3570					0.11614974819940471
ARGKPRGR	8	Unmodified	_ARGKPRGR_					0	0	0			REV__ENST00000314045.11_1_12:113595253-113595667:-|nuORF	REV__ENST00000314045.11_1_12:113595253-113595667:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	448.7540283203125	2	449.278109	896.541666	2.2827	0.0010256	3.4248	0.0015387	5.7075	0.0025643	449.2796547420603	92.574	0.67062	92.574	92.174	92.845	0					21	15	2	0	0	0	0.028476	1	9967	9967		16.473	0	1	617550	+		2437	24377	1771	1780	3571	3571					0.08925670899759552
ARGLCLLQ	8	Unmodified	_ARGLCLLQ_					0	0	0			REV__ENSG00000023839|ENST00000647814|ABCC2	REV__ENSG00000023839|ENST00000647814|ABCC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	438.21051025390625	2	437.25238	872.490207	0.69039	0.00030188	-2.5512	-0.0011155	-1.8608	-0.00081366	437.2506310964041	56.323	1.0373	56.323	56.011	57.048	0					48	24	3	0	0	0	0.028476	1	4693	4693		24.203	0	1	715070	+		2438	16561	1772	1781	3572	3572					0.04886166090830102
ARGNIIRGII	10	Unmodified	_ARGNIIRGII_					0	0	0		tr|A0A553SMA7|A0A553SMA7_NIACIPTSgalactitoltransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_22100PE=4SV=1	tr|A0A553SMA7|A0A553SMA7_NIACIPTSgalactitoltransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_22100PE=4SV=1	tr|A0A553SMA7|A0A553SMA7_NIACIPTSgalactitoltransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_22100PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.741943359375	2	541.843282	1081.67201	0.1304	7.0657E-05	4.2658	0.0023114	4.3962	0.0023821	541.8455101754098	73.657	0.46573	73.657	73.479	73.945	0					20	11	2	0	0	0	0.026849	1	7272	7272		19.104	0	1	1247100			2439	33816	1773	1782	3573	3573					0.13444222108091708
ARGPQGLK	8	Unmodified	_ARGPQGLK_					0	0	0			REV__ENST00000508698.3_1_4:186347475-186347517:+|nuORF	REV__ENST00000508698.3_1_4:186347475-186347517:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.20166015625	2	413.748319	825.482085	3.3405	0.0013821	-0.95342	-0.00039448	2.3871	0.00098765	413.74782833618394	88.802	0.68579	88.802	88.508	89.193	0					25	16	2	0	0	0	0.028476	1	9460	9460		33.516	20.556	1	852370	+		2440	26915	1774	1783	3574	3574					0.062363551657085736
ARGQHKQI	8	Unmodified	_ARGQHKQI_					0	0	0			REV__ENSG00000214929|ENST00000344803|SPATA31D1	REV__ENSG00000214929|ENST00000344803|SPATA31D1	MULTI-SECPEP	OvCa99_classI_Rep5	1	468.2796325683594	2	469.26995	936.525347	1.0603	0.00049756	-2.3929	-0.0011229	-1.3326	-0.00062534	469.26873704850425	157.12	0.85435	157.12	156.85	157.7	0					33	16	3	0	0	0	0.028476	1	18404	18404		19.36	4.6959	1	190750	+		2441	23302	1775	1784	3575	3575					0.0545454494298383
ARGRAGSH	8	Unmodified	_ARGRAGSH_					0	0	0			REV__ENST00000456859.2_1_12:57066766-57082127:-|nuORF	REV__ENST00000456859.2_1_12:57066766-57082127:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	406.2174987792969	2	406.217717	810.420882	0.94949	0.0003857	-1.0662	-0.0004331	-0.11669	-4.7401E-05	406.2172480496786	136.21	1.6631	135.99	135.18	136.84	-0.22697					51	33	2	0	0	0	0.72896	1	13585	13585		37.159	0	1	19597	+		2442	26037	1776	1785	3576	3576					0.008088431862802281
ARGRAGSH	8	Unmodified	_ARGRAGSH_					0	0	0			REV__ENST00000456859.2_1_12:57066766-57082127:-|nuORF	REV__ENST00000456859.2_1_12:57066766-57082127:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	406.217717	810.420882	0.94949	0.0003857	-1.0662	-0.0004331	-0.11669	-4.7401E-05	406.2172480496786	136.21	1.6631	135.99	135.18	136.84	-0.22697	0.055438	0.00029682	NaN	37.159	51	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19597	+		2443	26037	1776	1785							0.008088431862802281
ARGRAGSH	8	Unmodified	_ARGRAGSH_					0	0	0			REV__ENST00000456859.2_1_12:57066766-57082127:-|nuORF	REV__ENST00000456859.2_1_12:57066766-57082127:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	406.217717	810.420882	-0.29115	-0.00011827	0.26107	0.00010605	-0.030087	-1.2222E-05	406.2177570482661	137.08	0.87122	135.99	135.61	136.48	-1.0858	0.060221	0.0013751	NaN	37.159	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26412	+		2444	26037	1776	1785							0.008088431862802281
ARGRGVDLTE	10	Unmodified	_ARGRGVDLTE_					0	0	0		nc|ENSG00000144566|P20339-2|RAB5A;ENSG00000144566|ENST00000273047|RAB5A;ENST00000473608.1_1_3:20017064-20025312:+|nuORF	nc|ENSG00000144566|P20339-2|RAB5A	nc|ENSG00000144566|P20339-2|RAB5A	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.31201171875	2	537.288537	1072.56252	-0.30523	-0.00016399	0.36648	0.0001969	0.061252	3.291E-05	537.2884814125389	33.425	0.53898	33.425	33.285	33.824	0					18	10	2	0	0	0	0.026891	1	1546	1546		31.53	3.6476	1	141980			2445	5160	1777	1786	3577	3577					0.029141716981030186
ARGRRCPRA	9	Unmodified	_ARGRRCPRA_					0	0	0			REV__SEL1L3-BHLHE41|1|fusion	REV__SEL1L3-BHLHE41|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.3069458007812	2	521.793601	1041.57265	-0.63265	-0.00033011	-0.86284	-0.00045023	-1.4955	-0.00078034	521.793495453324	90.365	0.86503	88.285	88.108	88.973	-2.0805					30	16	2	0	0	0	0.027462	1	5640	5640		37.159	0.13063	1	86321	+		2446	29351	1778	1787	3578	3578					0.053525009423537995
ARGRWLTL	8	Unmodified	_ARGRWLTL_					0	0	0		ENST00000560305.5_1_15:40855021-40855129:-|nuORF	ENST00000560305.5_1_15:40855021-40855129:-|nuORF	ENST00000560305.5_1_15:40855021-40855129:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.3123474121094	2	486.790518	971.566484	2.0471	0.00099653	-0.11927	-5.8061E-05	1.9279	0.00093847	486.7902778909146	99.929	0.95774	99.929	99.405	100.36	0					50	22	3	0	0	0	0.028476	1	10987	10987		47.916	0	1	1589000			2447	13733	1779	1788	3579	3579					0.0795630598245225
ARGSGQTTTLW	11	Unmodified	_ARGSGQTTTLW_					0	0	0			REV__ENST00000301021.7_1_16:88928025-88928253:+|nuORF	REV__ENST00000301021.7_1_16:88928025-88928253:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	589.3008422851562	2	589.301644	1176.58874	-0.83238	-0.00049052	-2.1634	-0.0012749	-2.9958	-0.0017654	589.3001924637921	36.459	4.6814	36.459	35.984	40.666	0					182	103	3	0	0	0	0.60323	1	1910	1910		44.377	10.205	1	805190	+		2448	24241	1780	1789	3580	3580					0.007504408695467646
ARGTRPLSP	9	Unmodified	_ARGTRPLSP_					0	0	0			REV__ENSG00000077097|ENST00000264331|TOP2B	REV__ENSG00000077097|ENST00000264331|TOP2B	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.77838134765625	2	477.777608	953.540663	-0.82611	-0.0003947	0.0037772	1.8047E-06	-0.82233	-0.00039289	477.7776089014007	43.823	3.0314	40.816	40.483	43.515	-3.0074					146	58	4	0	0	0	0.35444	1	2174	2174		56.721	1.9447	1	12741000	+		2449	17003	1781	1790	3581	3581					0.0620341174017085
ARGVAERTPS	10	Unmodified	_ARGVAERTPS_					0	0	0		nc|ENSG00000163531|O94856-3|NFASC;nc|ENSG00000163531|O94856-8|NFASC;nc|ENSG00000163531|O94856-11|NFASC;ENST00000514644.5_1_1:204840022-204943419:+|nuORF	nc|ENSG00000163531|O94856-3|NFASC	nc|ENSG00000163531|O94856-3|NFASC	MULTI-MSMS	OvCa9_classI_Rep2	2	522.2816772460938	2	522.283254	1042.55196	-0.39742	-0.00020757	-3.321	-0.0017345	-3.7184	-0.0019421	522.2813090253205	121.36	1.286	121.16	120.8	122.09	-0.19719					52	25	3	0	0	0	0.55359	1	11725	11725		47.657	3.2801	1	67177			2450	15139	1782	1791	3582	3582					0.032381890436681715
ARGVVPKH	8	Unmodified	_ARGVVPKH_					0	0	0			REV__ENST00000592670.5_1_17:40911856-40912668:-|nuORF	REV__ENST00000592670.5_1_17:40911856-40912668:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	432.254638671875	2	432.264136	862.51372	-0.4288	-0.00018536	0.26067	0.00011268	-0.16813	-7.2677E-05	432.2640044492851	41.919	0.51842	41.919	41.724	42.242	0					16	11	2	0	0	0	0.028476	1	2672	2672		19.36	0	1	93554	+		2451	27953	1783	1792	3583	3583					0.07696347919659274
ARGWSRGHI	9	Unmodified	_ARGWSRGHI_					0	0	0			REV__LIMK2|p.E335Rfs*14|1|0.15|ENSG00000182541|chr22:31266091-31266091|G/-|frameshift_variant	REV__LIMK2|p.E335Rfs*14|1|0.15|ENSG00000182541|chr22:31266091-31266091|G/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.8382568359375	2	520.280849	1038.54715	-1.5251	-0.0007935	-0.51065	-0.00026568	-2.0358	-0.0010592	520.2805546622441	34.763	0.37136	34.763	34.586	34.957	0					14	7	3	0	0	0	0.027462	1	1721	1721		51.335	3.4199	1	173030	+		2452	28619	1784	1793	3584	3584					0.02941349691582218
ARHAHRSAL	9	Unmodified	_ARHAHRSAL_					0	0	0		ENST00000442675.1_1_9:5041269-5041823:+|nuORF	ENST00000442675.1_1_9:5041269-5041823:+|nuORF	ENST00000442675.1_1_9:5041269-5041823:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	509.787841796875	2	509.786299	1017.55804	-0.97494	-0.00049701	2.9058	0.0014813	1.9308	0.0009843	509.7875739236814	100.78	1.9275	99.173	98.518	100.45	-1.6053					62	37	4	0	0	0	0.2422	1	6864	6864		69.628	14.851	1	550400			2453	11944	1785	1794	3585	3585					0.04996752065835608
ARHDHAVSL	9	Unmodified	_ARHDHAVSL_					0	0	0		nc|ENSG00000180900|Q14160-2|SCRIB;nc|ENSG00000180900|Q14160|SCRIB;ENSG00000180900|ENST00000356994|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.2286682128906	2	503.264865	1004.51518	-0.6724	-0.00033839	2.1528	0.0010834	1.4804	0.00074503	503.26579758926175	37.739	0.81868	37.739	37.576	38.394	0					25	17	3	0	0	0	0.027418	1	2128	2128		40.778	1.5253	1	68154			2454	7896	1786	1795	3586	3586					0.013099372177407531
ARHGKPPLI	9	Unmodified	_ARHGKPPLI_					0	0	0			REV__ENST00000532681.5_1_11:45940000-45940354:-|nuORF	REV__ENST00000532681.5_1_11:45940000-45940354:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	494.7940368652344	2	494.806168	987.597784	0.39124	0.00019359	-2.2148	-0.0010959	-1.8236	-0.00090231	494.80496744946623	96.016	1.5823	94.988	94.417	95.999	-1.0281					49	31	2	0	0	0	0.027462	1	8707	8707		25.45	0	1	310160	+		2455	27238	1787	1796	3587	3587					0.10348879016555657
ARHTLTLLRKS	11	Unmodified	_ARHTLTLLRKS_					0	0	0			REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	MULTI-SECPEP	OvCa9_classI_Rep2	2	433.25537109375	3	432.601727	1294.78335	-5.0635	-0.0021905	-1.4343	-0.0006205	-6.4979	-0.002811	432.6010180132628	162.79	0.22873	162.57	162.45	162.68	-0.22696					9	4	3	0	0	0	0.025943	1	16595	16595		29.245	16.288	1	101910	+		2456	21219	1788	1797	3588	3588					0.14775236745367692
ARHTLTLLRKS	11	Unmodified	_ARHTLTLLRKS_					0	0	0			REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	REV__nc|ENSG00000166783|Q9Y4F3-3|MARF1	MULTI-SECPEP	OvCa9_classI_Rep3	3	433.25653076171875	3	432.601727	1294.78335	-6.3318	-0.0027391	-1.7551	-0.00075925	-8.0869	-0.0034984	432.6008863323178	163.98	0.25491	162.59	162.46	162.72	-1.3925					8	5	2	0	0	0	0.025466	1	14312	14312		25.068	0	1	140210	+		2457	21219	1788	1797	3589	3589					0.14775236745367692
ARIAHQYF	8	Unmodified	_ARIAHQYF_					0	0	0		ENSG00000124302|ENST00000650847|CHST8;EPT1-CHST8|1|fusion	ENSG00000124302|ENST00000650847|CHST8	ENSG00000124302|ENST00000650847|CHST8	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.7975158691406	2	503.266876	1004.5192	0.4164	0.00020956	-2.3653	-0.0011904	-1.9489	-0.00098082	503.2655739332568	161.69	0.81482	161.69	161.26	162.07	0					32	15	3	0	0	0	0.028476	1	18909	18909		31.955	5.2619	1	44150			2458	3645	1789	1798	3590	3590					0.017120267114592025
ARIALLPLL	9	Unmodified	_ARIALLPLL_					0	0	0		chr19:19516332-19527306|94|55.51|0.18|8.26|+|0|NDUFA13,None|1;ENSG00000186010|ENST00000507754|NDUFA13;nc|ENSG00000186010|Q9P0J0-2|NDUFA13;ENST00000586674.1_1_19:19627047-19643527:+|nuORF	chr19:19516332-19527306|94|55.51|0.18|8.26|+|0|NDUFA13,None|1	chr19:19516332-19527306|94|55.51|0.18|8.26|+|0|NDUFA13,None|1	MULTI-MSMS	OvCa9_classI_Rep2	2	490.3365478515625	2	490.33677	978.658987	0.31976	0.00015679	-1.1553	-0.00056648	-0.83553	-0.00040969	490.3362879264998	135.18	3.9777	134.96	134.64	138.62	-0.22697					225	81	5	0	0	0	0.6959	1	13656	13656		19.36	1.0356	1	7114000			2459	407	1790	1799	3591	3591					0.16880390996004735
ARIATAIVGDV	11	Unmodified	_ARIATAIVGDV_					0	0	0			REV__nc|ENSG00000103932|Q9BWH6-2|RPAP1	REV__nc|ENSG00000103932|Q9BWH6-2|RPAP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.3184204101562	2	543.319306	1084.62406	0.23976	0.00013027	-2.7401	-0.0014887	-2.5003	-0.0013585	543.3177057743393	34.411	1.1529	31.623	31.349	32.502	-2.7881					48	22	3	0	0	0	0.71498	1	1023	1023		24.519	0	1	218380	+		2460	17636	1791	1800	3592	3592					0.08513103397353916
ARIAVPPCSR	10	Unmodified	_ARIAVPPCSR_					0	0	0			REV__ENSG00000147119|ENST00000276055|CHST7	REV__ENSG00000147119|ENST00000276055|CHST7	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.8421630859375	2	535.300393	1068.58623	-0.93487	-0.00050044	4.4371	0.0023752	3.5023	0.0018748	535.8050772533408	106.83	0.79428	106.52	106.08	106.87	-0.30836					38	15	3	0	0	0	0.026522	1	9949	9949		47.96	0	1	57560	+		2461	20045	1792	1801	3593	3593					0.05468313930896329
ARIDSRLL	8	Unmodified	_ARIDSRLL_					0	0	0		tr|A0A553ST17|A0A553ST17_NIACIPTSsystemmannose-specificEIIABcomponentOS=NialliacirculansOX=1397GN=CEQ21_04030PE=4SV=1	tr|A0A553ST17|A0A553ST17_NIACIPTSsystemmannose-specificEIIABcomponentOS=NialliacirculansOX=1397GN=CEQ21_04030PE=4SV=1	tr|A0A553ST17|A0A553ST17_NIACIPTSsystemmannose-specificEIIABcomponentOS=NialliacirculansOX=1397GN=CEQ21_04030PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	472.2899169921875	2	472.287808	942.561064	0.29325	0.0001385	3.5201	0.0016625	3.8133	0.001801	472.2893679922423	99.284	1.9013	97.599	97.113	99.014	-1.685					79	37	4	0	0	0	0.56195	1	6686	6686		71.296	2.811	1	778780			2462	34449	1793	1802	3594	3594					0.08748582400005489
ARIEETPGTIL	11	Unmodified	_ARIEETPGTIL_					0	0	0			REV__ENSG00000131400|ENST00000253719|NAPSA	REV__ENSG00000131400|ENST00000253719|NAPSA	MULTI-MSMS	OvCa9_classI_Rep4_	4	600.3369750976562	2	600.335153	1198.65575	0.14817	8.8949E-05	-0.95954	-0.00057605	-0.81137	-0.0004871	600.3347530077571	94	1.1594	91.493	91.212	92.372	-2.5072					62	23	3	0	0	0	0.48315	1	8220	8220		37.812	0	1	204280	+		2463	19013	1794	1803	3595	3595					0.06437051360694568
ARIETGASTV	10	Unmodified	_ARIETGASTV_					0	0	0			REV__ENSG00000038219|ENST00000040738|BOD1L1	REV__ENSG00000038219|ENST00000040738|BOD1L1	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.71319580078125	2	502.772188	1003.52982	0.026795	1.3472E-05	-0.86216	-0.00043347	-0.83537	-0.00042	502.77180605427486	57.182	0.51757	57.182	57.004	57.522	0					15	11	2	0	0	0	0.026931	1	4775	4775		30.318	10.321	1	217570	+		2464	16616	1795	1804	3596	3596					0.0281996457523519
ARIETGASTV	10	Unmodified	_ARIETGASTV_					0	0	0			REV__ENSG00000038219|ENST00000040738|BOD1L1	REV__ENSG00000038219|ENST00000040738|BOD1L1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	502.772188	1003.52982	-0.20427	-0.0001027	-8.0112	-0.0040278	-8.2155	-0.0041305	502.7691698554193	60.885	0.54748	57.455	56.996	57.544	-3.43	0.13629	-0.0029784	NaN	30.318	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22159	+		2465	16616	1795	1804							0.0281996457523519
ARIHGIKV	8	Unmodified	_ARIHGIKV_					0	0	0			REV__nc|ENSG00000144057|Q96JF0-2|ST6GAL2	REV__nc|ENSG00000144057|Q96JF0-2|ST6GAL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	447.73785400390625	2	447.287611	892.56067	0.070246	3.142E-05	-0.86942	-0.00038888	-0.79917	-0.00035746	447.2871354944081	65.447	0.51717	65.447	65.231	65.748	0					21	12	2	0	0	0	0.028476	1	6031	6031		31.955	12.595	1	794570	+		2466	28904	1796	1805	3597	3597					0.11009207470806359
ARIKVDIPN	9	Unmodified	_ARIKVDIPN_					0	0	0			REV__tr|A0A553SQ14|A0A553SQ14_NIACIQuinoneoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_17080PE=4SV=1	REV__tr|A0A553SQ14|A0A553SQ14_NIACIQuinoneoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_17080PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	513.3106689453125	2	513.308741	1024.60293	1.7974	0.00092261	0.69392	0.00035619	2.4913	0.0012788	513.3089335710671	87.221	0.45128	87.221	87.054	87.505	0					27	10	3	0	0	0	0.1804	1	9228	9228		79.713	5.7379	1	2373500	+		2467	30596	1797	1806	3598	3598					0.09161138088529697
ARIRGESLF	9	Unmodified	_ARIRGESLF_					0	0	0			REV__ENSG00000148204|ENST00000373631|CRB2	REV__ENSG00000148204|ENST00000373631|CRB2	MULTI-MSMS	OvCa9_classI_Rep3	3	524.798828125	2	524.79854	1047.58253	-0.044328	-2.3263E-05	3.2131	0.0016862	3.1687	0.0016629	524.8003676874375	130.37	0.98898	129.26	129.03	130.02	-1.1121					41	19	3	0	0	0	0.51865	1	10369	10369		40.778	1.7567	1	97930	+		2468	20093	1798	1807	3599	3599					0.06063967428713113
ARIRLKIEE	9	Unmodified	_ARIRLKIEE_					0	0	0			REV__nc|ENSG00000142166|P17181-2|IFNAR1	REV__nc|ENSG00000142166|P17181-2|IFNAR1	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.3497924804688	2	564.348397	1126.68224	4.1129	0.0023211	-0.46577	-0.00026286	3.6472	0.0020583	564.3480453729909	135.01	0.98935	133.46	133.16	134.15	-1.5437					39	19	3	0	0	0	0.63422	1	13077	13077		27.882	2.3082	1	69216	+		2469	19769	1799	1808	3600	3600					0.12396785042665215
ARIYIVQIY	9	Unmodified	_ARIYIVQIY_					0	0	0			REV__ENST00000546525.5_1_6:169959286-169959583:-|nuORF	REV__ENST00000546525.5_1_6:169959286-169959583:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	569.8350219726562	2	569.834591	1137.65463	-0.75134	-0.00042814	-0.049233	-2.8055E-05	-0.80058	-0.0004562	569.8345397385756	99.869	5.0637	97.543	97.212	102.28	-2.3253					291	98	6	0	0	0	0.36502	1	9100	9100		55.504	0.72789	1	9449400	+		2470	27424	1800	1809	3601	3601					0.09130881782425604
ARKAEITLL	9	Unmodified	_ARKAEITLL_					0	0	0		tr|A0A7D7A2J0|A0A7D7A2J0_9CLOTTerminaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20095PE=4SV=1	tr|A0A7D7A2J0|A0A7D7A2J0_9CLOTTerminaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20095PE=4SV=1	tr|A0A7D7A2J0|A0A7D7A2J0_9CLOTTerminaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20095PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.281005859375	2	507.818941	1013.62333	-0.65701	-0.00033364	4.4419	0.0022557	3.7849	0.001922	507.82110877041083	77.248	1.2621	74.432	74.001	75.263	-2.8165					39	25	2	0	0	0	0.027433	1	6269	6269		60.972	7.6205	1	91712			2471	36080	1801	1810	3602	3602					0.1170630874833023
ARKAQVESD	9	Unmodified	_ARKAQVESD_					0	0	0			REV__ENSG00000138356|ENST00000374700|AOX1	REV__ENSG00000138356|ENST00000374700|AOX1	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.2790832519531	2	502.261988	1002.50942	1.1565	0.00058085	1.7228	0.00086529	2.8793	0.0014461	502.26296580620937	89.043	1.5328	87.675	87.231	88.764	-1.3676					48	30	3	0	0	0	0.027462	1	7878	7878		42.396	0	1	38121	+		2472	19532	1802	1811	3603	3603					0.008267939154279702
ARKDEKVII	9	Unmodified	_ARKDEKVII_					0	0	0		tr|A0A553SNL6|A0A553SNL6_NIACI3'-phosphate/5'-hydroxynucleicacidligaseOS=NialliacirculansOX=1397GN=CEQ21_24700PE=4SV=1	tr|A0A553SNL6|A0A553SNL6_NIACI3'-phosphate/5'-hydroxynucleicacidligaseOS=NialliacirculansOX=1397GN=CEQ21_24700PE=4SV=1	tr|A0A553SNL6|A0A553SNL6_NIACI3'-phosphate/5'-hydroxynucleicacidligaseOS=NialliacirculansOX=1397GN=CEQ21_24700PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.3444213867188	2	536.329673	1070.64479	-1.8947	-0.0010162	-3.9116	-0.0020979	-5.8063	-0.0031141	536.3273940057683	45.414	1.1475	42.375	42.075	43.223	-3.0385					51	21	3	0	0	0	0.027462	1	2312	2312		35.618	20.753	1	247560			2473	33937	1803	1812	3604	3604					0.11229693777045213
ARKEVLKV	8	Unmodified	_ARKEVLKV_					0	0	0			REV__ENST00000598285.1_1_19:48259921-48260259:+|nuORF	REV__ENST00000598285.1_1_19:48259921-48260259:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	471.8095703125	2	471.808377	941.6022	0.52211	0.00024634	-1.1764	-0.00055505	-0.65432	-0.00030871	471.80782218339226	63.476	2.0907	63.476	63.14	65.231	0					105	51	4	0	0	0	0.62474	1	5753	5753		58.782	3.2778	1	39476000	+		2474	17716	1804	1813	3605	3605					0.12906343439476586
ARKGNFML	8	Unmodified	_ARKGNFML_					0	0	0		ENST00000271375.6_1_1:168213838-168214108:+|nuORF	ENST00000271375.6_1_1:168213838-168214108:+|nuORF	ENST00000271375.6_1_1:168213838-168214108:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	468.2572021484375	2	468.75783	935.501106	0.34471	0.00016159	2.3068	0.0010813	2.6515	0.0012429	468.75885147482796	46.184	0.43245	46.184	46.024	46.456	0					17	9	2	0	0	0	0.028476	1	3277	3277		25.45	3.7478	1	544370			2475	9991	1805	1814	3606	3606					0.030775684651189295
ARKILKNW	8	Unmodified	_ARKILKNW_					0	0	0			REV__KAT6A|p.F1751Lfs*32|1|0.04|ENSG00000083168|chr8:41932967-41932968|-/CATAGGCTGCTGGGTATAGGCCTGGCTCCCC|frameshift_variant	REV__KAT6A|p.F1751Lfs*32|1|0.04|ENSG00000083168|chr8:41932967-41932968|-/CATAGGCTGCTGGGTATAGGCCTGGCTCCCC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.7974243164062	2	514.821818	1027.62908	-0.76065	-0.0003916	-1.3484	-0.0006942	-2.1091	-0.0010858	514.820935746352	53.66	0.21038	53.66	53.564	53.774	0					6	4	2	0	0	0	0.028476	1	4288	4288		24.203	10.427	1	70646	+		2476	17097	1806	1815	3607	3607					0.11637452050626962
ARKKHAGG	8	Unmodified	_ARKKHAGG_					0	0	0			REV__nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	REV__nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	MULTI-MSMS	OvCa9_classI_Rep2	2	412.74615478515625	2	412.746111	823.477669	0.75276	0.0003107	-0.50806	-0.0002097	0.2447	0.000101	412.74581316945023	134.99	1.618	134.76	134.29	135.91	-0.22696					65	32	3	0	0	0	0.75991	1	13341	13341		21.702	1.2205	1	284470	+		2477	20590	1807	1816	3608	3608					0.05886890742806372
ARKKHAGG	8	Unmodified	_ARKKHAGG_					0	0	0			REV__nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	REV__nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	MULTI-MSMS	OvCa9_classI_Rep4_	4	412.74530029296875	2	412.746111	823.477669	3.7849	0.0015622	-3.2675	-0.0013487	0.51741	0.00021356	412.74457223546	130.99	1.0366	129.51	129.21	130.24	-1.4779					35	21	3	0	0	0	0.74595	1	12619	12619		14.664	4.4793	1	52457	+		2478	20590	1807	1816	3609	3609					0.05886890742806372
ARKKHAGG	8	Unmodified	_ARKKHAGG_					0	0	0			REV__nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	REV__nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	412.746111	823.477669	1.1532	0.00047599	-0.72242	-0.00029817	0.4308	0.00017781	412.7456812555834	130.64	0.79169	129.52	129.27	130.06	-1.1249	0.0032899	0.0014769	NaN	14.664	26	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24982	+		2479	20590	1807	1816							0.05886890742806372
ARKKHAGG	8	Unmodified	_ARKKHAGG_					0	0	0			REV__nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	REV__nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	412.746111	823.477669	3.7849	0.0015622	-3.2675	-0.0013487	0.51741	0.00021356	412.74457223546	130.99	1.0366	129.51	129.21	130.24	-1.4779	-0.0032899	-0.00062404	NaN	14.664	35	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52457	+		2480	20590	1807	1816							0.05886890742806372
ARKKRAGAP	9	Unmodified	_ARKKRAGAP_					0	0	0			REV__ENSG00000100078|ENST00000215885|PLA2G3	REV__ENSG00000100078|ENST00000215885|PLA2G3	MULTI-SECPEP	OvCa9_classI_Rep3	3	478.79339599609375	2	477.801417	953.588282	-0.28847	-0.00013783	2.2149	0.0010583	1.9264	0.00092043	477.80277113378133	82.31	0.89441	80.014	79.735	80.629	-2.2963					26	17	2	0	0	0	0.027433	1	4704	4704		30.504	0	1	52175	+		2481	17361	1808	1817	3610	3610					0.10963110731029246
ARKLESHRMV	10	Unmodified	_ARKLESHRMV_					0	0	0			REV__tr|A0A7D6VXG7|A0A7D6VXG7_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08535PE=4SV=1	REV__tr|A0A7D6VXG7|A0A7D6VXG7_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08535PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	409.53765869140625	3	409.564396	1225.67136	0.64444	0.00026394	-3.4925	-0.0014304	-2.8481	-0.0011665	409.562815520476	50.797	0.17959	50.797	50.64	50.819	0					5	3	2	0	0	0	0.026782	1	3863	3863		58.246	42.909	1	70623	+		2482	31777	1809	1818	3611	3611					0.0675505939670984
ARKLFAPQ	8	Unmodified	_ARKLFAPQ_					0	0	0		ENSG00000167900|ENST00000301634|TK1	ENSG00000167900|ENST00000301634|TK1	ENSG00000167900|ENST00000301634|TK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.76763916015625	2	465.779619	929.544686	-0.28158	-0.00013116	-0.058967	-2.7466E-05	-0.34055	-0.00015862	465.7793047467943	60.042	0.35948	60.042	59.918	60.277	0					11	8	2	0	0	0	0.028476	1	5210	5210		17.365	0	1	179570			2483	6848	1810	1819	3612	3612					0.07709501233887295
ARKLIEKSR	9	Unmodified	_ARKLIEKSR_					0	0	0		nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;TJP2|p.S1031Dfs*21|1|0.05|ENSG00000119139|chr9:69251132-69251133|-/TG|frameshift_variant;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.8140258789062	2	550.848564	1099.68258	-2.9551	-0.0016278	-2.1147	-0.0011649	-5.0698	-0.0027927	550.847341690955	103.98	0.34224	103.98	103.85	104.19	0					9	7	2	0	0	0	0.027461	1	11668	11668		32.812	0	1	73377			2484	3344	1811	1820	3613	3613					0.13672204762519868
ARKLKGLP	8	Unmodified	_ARKLKGLP_					0	0	0			REV__nc|ENSG00000152457|Q96SD1-4|DCLRE1C	REV__nc|ENSG00000152457|Q96SD1-4|DCLRE1C	MULTI-SECPEP	OvCa99_classI_Rep5	1	442.2294921875	2	441.797812	881.581071	0.47116	0.00020816	-0.46167	-0.00020396	0.0094914	4.1933E-06	441.7975373699188	35.124	0.33488	35.124	34.911	35.246	0					9	6	2	0	0	0	0.028476	1	1736	1736		15.636	0.97212	1	31728	+		2485	20287	1812	1821	3614	3614					0.13554378130595524
ARKLPKKLL	9	Unmodified	_ARKLPKKLL_					0	0	0			REV__ENSG00000241962|ENST00000424491|unknown	REV__ENSG00000241962|ENST00000424491|unknown	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.2966918945312	2	533.876594	1065.73863	2.2027	0.0011759	-0.48935	-0.00026125	1.7133	0.0009147	533.8762608739216	110.51	0.71407	110.51	110.31	111.02	0					23	15	2	0	0	0	0.027462	1	12578	12578		6.7355	0	1	148990	+		2486	23451	1813	1822	3615	3615					0.20839457669990225
ARKPSEPLK	9	Unmodified	_ARKPSEPLK_					0	0	0			REV__nc|ENSG00000108312|P17480-2|UBTF	REV__nc|ENSG00000108312|P17480-2|UBTF	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.8161010742188	2	513.308741	1024.60293	0.028684	1.4724E-05	-0.043733	-2.2448E-05	-0.015049	-7.7248E-06	513.3085760884877	73.929	1.5276	71.442	71.074	72.602	-2.4873					52	30	3	0	0	0	0.027447	1	3750	3750		47.657	0	1	144670	+		2487	17879	1814	1823	3616	3616					0.0916113808850696
ARKQGIEVK	9	Unmodified	_ARKQGIEVK_					0	0	0			REV__SDHAF2-API5|1|fusion	REV__SDHAF2-API5|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	514.8137817382812	2	514.81419	1027.61383	2.5746	0.0013254	-2.6896	-0.0013847	-0.11509	-5.9251E-05	514.8126670332618	27.295	1.0989	24.585	24.394	25.493	-2.7097					55	24	4	0	0	0	0.40818	1	456	456		51.193	7.0759	1	264850	+		2488	21164	1815	1824	3617	3617					0.1011254046279646
ARKRASLD	8	Unmodified	_ARKRASLD_					0	0	0		ENSG00000051341|ENST00000264233|POLQ;nc|ENSG00000051341|O75417-2|POLQ	ENSG00000051341|ENST00000264233|POLQ	ENSG00000051341|ENST00000264233|POLQ	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.8946838378906	2	458.769783	915.525013	2.6087	0.0011968	3.5229	0.0016162	6.1317	0.002813	458.77110603541496	75.836	0.72664	75.836	75.639	76.365	0					23	17	2	0	0	0	0.028476	1	7602	7602		20.947	5.3051	1	1061700			2489	1186	1816	1825	3618	3618					0.06387125223136536
ARKRLILD	8	Unmodified	_ARKRLILD_					0	0	0		tr|A0A7D6VNP0|A0A7D6VNP0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13400PE=4SV=1	tr|A0A7D6VNP0|A0A7D6VNP0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13400PE=4SV=1	tr|A0A7D6VNP0|A0A7D6VNP0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13400PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	492.8178405761719	2	492.819276	983.623999	-1.0524	-0.00051866	0.60887	0.00030006	-0.44358	-0.0002186	492.81937696825383	61.985	2.6287	59.225	58.882	61.511	-2.7593					139	50	4	0	0	0	0.62934	1	4613	4613		57.811	0	1	798600			2490	34719	1817	1826	3619	3619					0.13153148188030173
ARKRQVRRRPQ	11	Unmodified	_ARKRQVRRRPQ_					0	0	0			REV__ENSG00000132716|ENST00000368074|DCAF8	REV__ENSG00000132716|ENST00000368074|DCAF8	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.7755432128906	3	484.302786	1449.88653	2.4944	0.0012081	-3.8864	-0.0018822	-1.392	-0.00067413	484.3009333284229	89.063	1.9387	89.063	88.76	90.698	0					154	47	5	0	0	0	0.02625	1	9592	9592		5.6988	0	1	47875000	+		2491	19100	1818	1827	3620	3620					0.1795816197654858
ARKTRVEAVPR	11	Unmodified	_ARKTRVEAVPR_					0	0	0			REV__ENST00000492555.5_1_3:52568505-52568682:-|nuORF	REV__ENST00000492555.5_1_3:52568505-52568682:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	641.880126953125	2	641.888752	1281.76295	-6.2551	-0.0040151	-3.4206	-0.0021956	-9.6757	-0.0062107	641.8862689798733	156.94	0.92667	155.77	155.29	156.22	-1.1707					38	17	3	0	0	0	0.72485	1	13507	13507		17.468	1.8262	1	33885	+		2492	26693	1819	1828	3621	3621					0.1333406608553105
ARKVANTFKP	10	Unmodified	_ARKVANTFKP_					0	0	0		ENSG00000127666|ENST00000248244|TICAM1	ENSG00000127666|ENST00000248244|TICAM1	ENSG00000127666|ENST00000248244|TICAM1	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.3333740234375	2	566.33529	1130.65603	0.74278	0.00042066	-0.38212	-0.00021641	0.36065	0.00020425	566.3348766250632	102.44	2.1946	100.24	99.471	101.67	-2.1994					96	41	4	0	0	0	0.58067	1	9231	9231		44.377	3.599	1	222650			2493	3843	1820	1829	3622	3622					0.09592515871190699
ARLAGILSSAS	11	Unmodified	_ARLAGILSSAS_					0	0	0			REV__ENST00000321599.8_2_3:49764036-49764180:-|nuORF	REV__ENST00000321599.8_2_3:49764036-49764180:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3024291992188	2	523.303655	1044.59276	-2.1228	-0.0011108	2.0352	0.001065	-0.087543	-4.5811E-05	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.72064	1	11534	11534		22.58	1.6327	1	183010	+		2494	24448	1821	1830	3623	3623					0.07224530363282611
ARLAPIPIL	9	Unmodified	_ARLAPIPIL_					0	0	0			REV__PTCH1|p.S1176Yfs*8|1|0.05|ENSG00000185920|chr9:95449863-95449864|-/T|frameshift_variant	REV__PTCH1|p.S1176Yfs*8|1|0.05|ENSG00000185920|chr9:95449863-95449864|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.32098388671875	2	482.32112	962.627687	0.43906	0.00021177	-0.84183	-0.00040603	-0.40277	-0.00019426	482.32056847374173	113.85	1.8701	112.4	112.05	113.92	-1.4461					104	36	5	0	0	0	0.52083	1	10601	10601		40.573	1.7665	1	932630	+		2495	22544	1822	1831	3624	3624					0.14487817961901328
ARLAPLLL	8	Unmodified	_ARLAPLLL_					0	0	0		ENST00000585207.5_1_17:15602971-15603073:+|nuORF	ENST00000585207.5_1_17:15602971-15603073:+|nuORF	ENST00000585207.5_1_17:15602971-15603073:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	433.7959289550781	2	433.794738	865.574923	1.6323	0.0007081	-1.4478	-0.00062804	0.18456	8.0061E-05	433.79397915293447	113.07	1.9686	111.99	111.66	113.63	-1.0753					76	38	3	0	0	0	0.68312	1	8315	8315		46.766	4.292	1	587780			2496	14024	1823	1832	3625	3625					0.13675859899092302
ARLATLYML	9	Unmodified	_ARLATLYML_					0	0	0		ENST00000547997.5_1_12:95650374-95694446:+|nuORF;ENST00000552660.5_1_12:95650374-95694446:+|nuORF;ENSG00000028203|ENST00000436874|VEZT;ENST00000546398.5_1_12:95611596-95687545:+|nuORF;ENST00000549192.5_1_12:95650374-95690042:+|nuORF;nc|ENSG00000028203|Q9HBM0-2|VEZT;ENST00000547611.5_1_12:95611639-95668525:+|nuORF;ENST00000550106.5_1_12:95650374-95668525:+|nuORF	ENST00000547997.5_1_12:95650374-95694446:+|nuORF	ENST00000547997.5_1_12:95650374-95694446:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.837158203125	2	526.30207	1050.58959	0.014632	7.701E-06	-0.71969	-0.00037878	-0.70506	-0.00037107	526.301555268926	114.52	0.62496	113.12	112.63	113.25	-1.3977					15	11	2	0	0	0	0.027426	1	10607	10607		53.351	0	1	17576			2497	1059	1824	1833	3626	3626					0.06631563984910827
ARLATQRRR	9	Unmodified	_ARLATQRRR_					0	0	0			REV__ENST00000589111.5_1_19:39359746-39361880:-|nuORF	REV__ENST00000589111.5_1_19:39359746-39361880:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	564.348388671875	2	564.347055	1126.67956	-0.25788	-0.00014554	2.3823	0.0013444	2.1244	0.0011989	564.3482553857887	28.814	0.59824	28.814	28.588	29.186	0					28	11	4	0	0	0	0.38529	1	971	971		53.351	2.1588	1	621830	+		2498	22680	1825	1834	3627	3627					0.12128374428357347
ARLATQRRR	9	Unmodified	_ARLATQRRR_					0	0	0			REV__ENST00000589111.5_1_19:39359746-39361880:-|nuORF	REV__ENST00000589111.5_1_19:39359746-39361880:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	564.347055	1126.67956	-0.25788	-0.00014554	2.3823	0.0013444	2.1244	0.0011989	564.3482553857887	28.814	0.59824	28.814	28.588	29.186	0	0	0	NaN	53.351	28	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	621830	+		2499	22680	1825	1834							0.12128374428357347
ARLGFDML	8	Unmodified	_ARLGFDML_					0	0	0		tr|A0A553SHG7|A0A553SHG7_NIACIAnti-sigma-FfactorFinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_12885PE=4SV=1	tr|A0A553SHG7|A0A553SHG7_NIACIAnti-sigma-FfactorFinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_12885PE=4SV=1	tr|A0A553SHG7|A0A553SHG7_NIACIAnti-sigma-FfactorFinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_12885PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	461.74493408203125	2	461.744388	921.474223	-0.83419	-0.00038518	1.8288	0.00084442	0.99457	0.00045924	461.74511648930593	116.8	1.6831	115.76	115.49	117.17	-1.0414					73	33	4	0	0	0	0.65062	1	8768	8768		53.351	5.4358	1	334790			2500	33271	1826	1835	3628	3628					0.010344598539063554
ARLHACDEPCV	11	Unmodified	_ARLHACDEPCV_					0	0	0			REV__ENST00000566081.5_1_15:74281506-74284576:-|nuORF	REV__ENST00000566081.5_1_15:74281506-74284576:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	606.279052734375	2	607.276257	1212.53796	1.6594	0.0010077	-4.0628	-0.0024672	-2.4034	-0.0014595	607.2735617232754	110	0.3152	110	109.73	110.04	0					8	6	2	0	0	0	0.02538	1	12450	12450		37.812	10.764	1	29345	+		2501	27696	1827	1836	3629	3629					-0.0598054777130983
ARLIAGQP	8	Unmodified	_ARLIAGQP_					0	0	0			REV__ENSG00000163872|ENST00000305135|YEATS2	REV__ENSG00000163872|ENST00000305135|YEATS2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	412.7347717285156	2	413.250695	824.486836	1.4005	0.00057878	-1.4065	-0.00058126	-0.0059979	-2.4786E-06	413.25001284971773	36.776	0.99596	33.884	33.645	34.641	-2.8925					28	19	2	0	0	0	0.028476	1	1319	1319		31.955	0	1	26066	+		2502	20903	1828	1837	3630	3630					0.06757239308478802
ARLIASVIRI	10	Unmodified	_ARLIASVIRI_					0	0	0			REV__nc|ENSG00000262085|Q8NH06|OR1P1	REV__nc|ENSG00000262085|Q8NH06|OR1P1	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.8123779296875	2	556.369133	1110.72371	1.7755	0.00098782	0.7051	0.0003923	2.4806	0.0013801	556.3692114063132	83.623	0.41776	83.623	83.504	83.921	0					13	9	2	0	0	0	0.026931	1	8743	8743		37.812	14.769	1	110770	+		2503	29183	1829	1838	3631	3631					0.17277965801986284
ARLIPIIVL	9	Unmodified	_ARLIPIIVL_					0	0	0		ENSG00000136286|ENST00000258787|MYO1G;ENST00000483585.5_1_7:45002340-45005995:-|nuORF;ENST00000463516.5_1_7:45003626-45005995:-|nuORF	ENSG00000136286|ENST00000258787|MYO1G;ENST00000463516.5_1_7:45003626-45005995:-|nuORF	ENSG00000136286|ENST00000258787|MYO1G	MULTI-MSMS	OvCa99_classI_Rep5	1	504.3536682128906	2	504.35242	1006.69029	2.0376	0.0010277	-0.38783	-0.0001956	1.6498	0.00083207	504.3520653350078	136.8	1.0084	136.8	136.49	137.5	0					50	20	4	0	0	0	0.34496	1	15953	15953		57.811	0	1	791590			2504	4482;12227	1830	1839	3632	3632					0.18720964030080722
ARLLAPLLL	9	Unmodified	_ARLLAPLLL_					0	0	0		ENSG00000187730|ENST00000378585|GABRD	ENSG00000187730|ENST00000378585|GABRD	ENSG00000187730|ENST00000378585|GABRD	MULTI-MSMS	OvCa9_classI_Rep3	3	490.3372497558594	2	490.33677	978.658987	-1.5535	-0.00076172	0.74111	0.00036339	-0.81236	-0.00039833	490.33716888209767	136.71	4.5569	135.62	135.22	139.77	-1.0858					270	92	5	0	0	0	0.44294	10	11180	11078;11180;11262;11280;11292;11316;11323;11354;11361;11379		47.916	0	1	5555400			2505	8426	1831	1840	3633;3634;3635;3636;3637;3638;3639;3640;3641;3642	3634					0.16880390996004735
ARLLAPLLL	9	Unmodified	_ARLLAPLLL_					0	0	0		ENSG00000187730|ENST00000378585|GABRD	ENSG00000187730|ENST00000378585|GABRD	ENSG00000187730|ENST00000378585|GABRD	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.33697509765625	2	490.33677	978.658987	2.3125	0.0011339	-3.376	-0.0016554	-1.0635	-0.00052147	490.335203673426	137.13	5.8682	135.59	135.18	141.05	-1.5437					314	118	5	0	0	0	0.53957	1	13653	13653		38.806	0	1	8417000			2506	8426	1831	1840	3643	3643					0.16880390996004735
ARLLAPPVT	9	Unmodified	_ARLLAPPVT_					0	0	0			REV__nc|ENSG00000161681|Q9Y566-3|SHANK1	REV__nc|ENSG00000161681|Q9Y566-3|SHANK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.2908630371094	2	469.295102	936.575651	-0.18518	-8.6902E-05	0.0013245	6.2158E-07	-0.18385	-8.6281E-05	469.29473170418555	46.41	0.3649	43.338	43.136	43.501	-3.0724					10	6	2	0	0	0	0.027462	1	2437	2437		21.96	0	1	16798	+		2507	20703	1832	1841	3644	3644					0.10482654548138726
ARLLEELEL	9	Unmodified	_ARLLEELEL_					0	0	0			REV__nc|ENSG00000293543|Q6B8I1-5|DUSP13A	REV__nc|ENSG00000293543|Q6B8I1-5|DUSP13A	MULTI-MSMS	OvCa99_classI_Rep5	1	543.3146362304688	2	543.313689	1084.61282	1.9438	0.0010561	0.19751	0.00010731	2.1413	0.0011634	543.3136872599807	117.59	1.1189	117.59	117.23	118.34	0					40	23	2	0	0	0	0.2422	1	13480	13480		69.628	9.5094	1	344570	+		2508	29227	1833	1842	3645	3645					0.07390281303219126
ARLLGLVACLL	11	Unmodified	_ARLLGLVACLL_					0	0	0			REV__ENSG00000178732|ENST00000692618|GP5	REV__ENSG00000178732|ENST00000692618|GP5	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.8169555664062	2	571.359919	1140.70529	-0.08406	-4.8029E-05	2.6421	0.0015096	2.5581	0.0014616	571.3609571846762	45.045	0.22676	45.045	44.932	45.159	0					7	4	2	0	0	0	0.025909	1	3092	3092		26.693	13.239	1	52468	+		2509	22075	1834	1843	3646	3646					0.14056087835751896
ARLLIAKS	8	Unmodified	_ARLLIAKS_					0	0	0			REV__tr|A0A553SG71|A0A553SG71_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_10310PE=4SV=1	REV__tr|A0A553SG71|A0A553SG71_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_10310PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.29205322265625	2	436.28982	870.565087	2.865	0.00125	1.6954	0.00073969	4.5604	0.0019896	436.29039727042573	135.9	2.0052	134.35	134.01	136.01	-1.5437					90	40	3	0	0	0	0.73205	1	13239	13239		35.618	8.8222	1	94245	+		2510	29667	1835	1844	3647	3647					0.12462671893706556
ARLLLCFAR	9	Unmodified	_ARLLLCFAR_					0	0	0			REV__ENSG00000143869|ENST00000272224|GDF7	REV__ENSG00000143869|ENST00000272224|GDF7	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8174438476562	2	531.815679	1061.6168	-1.8698	-0.0009944	4.179	0.0022225	2.3092	0.0012281	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.46377	1	13742	13742		45.952	5.1738	1	166960	+		2511	19872	1836	1845	3648	3648					0.08846092315957321
ARLLNSNLHLR	11	Unmodified	_ARLLNSNLHLR_					0	0	0			REV__ENSG00000170382|ENST00000367177|LRRN2	REV__ENSG00000170382|ENST00000367177|LRRN2	MULTI-MSMS	OvCa9_classI_Rep3	3	436.2615966796875	3	436.261594	1305.76295	1.694	0.00073904	-2.0677	-0.00090204	-0.37362	-0.00016299	436.26077678089143	64.483	2.8395	61.49	61.14	63.98	-2.9933					174	55	5	0	0	0	0.69308	1	2525	2525		32.034	5.2844	1	3808000	+		2512	21536	1837	1846	3649	3649					0.12230066085544422
ARLLPNGLAI	10	Unmodified	_ARLLPNGLAI_					0	0	0		ENSG00000175318|ENST00000309731|GRAMD2A	ENSG00000175318|ENST00000309731|GRAMD2A	ENSG00000175318|ENST00000309731|GRAMD2A	MULTI-MSMS	OvCa9_classI_Rep2	2	519.3256225585938	2	519.326934	1036.63931	0.91528	0.00047533	-0.11424	-5.9329E-05	0.80104	0.000416	519.3263854293617	112.97	1.2349	112.84	112.62	113.86	-0.12174					63	24	3	0	0	0	0.46756	1	10703	10703		58.782	5.4305	1	264040			2513	7534	1838	1847	3650	3650					0.12246014985225884
ARLLPNGLAI	10	Unmodified	_ARLLPNGLAI_					0	0	0		ENSG00000175318|ENST00000309731|GRAMD2A	ENSG00000175318|ENST00000309731|GRAMD2A	ENSG00000175318|ENST00000309731|GRAMD2A	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.3263549804688	2	519.326934	1036.63931	0.30532	0.00015856	0.68552	0.00035601	0.99084	0.00051457	519.3267299350402	114.41	1.7356	113.01	112.73	114.46	-1.3977					69	33	3	0	0	0	0.45225	1	10679	10679		60.972	7.6205	1	315520			2514	7534	1838	1847	3651	3651					0.12246014985225884
ARLLSSRRA	9	Unmodified	_ARLLSSRRA_					0	0	0		ENST00000305321.4_1_16:30205128-30205326:-|nuORF	ENST00000305321.4_1_16:30205128-30205326:-|nuORF	ENST00000305321.4_1_16:30205128-30205326:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.29345703125	2	515.317432	1028.62031	-1.0385	-0.00053515	1.43	0.00073689	0.39147	0.00020173	515.3179003530981	26.701	0.39957	26.701	26.542	26.942	0					16	7	3	0	0	0	0.027462	1	721	721		15.642	0	1	84365			2515	10235	1839	1848	3652	3652					0.10714478414183759
ARLLVTAK	8	Unmodified	_ARLLVTAK_					0	0	0		ENST00000477267.1_1_10:102824694-102827451:+|nuORF;ENST00000465807.1_1_10:102826065-102827451:+|nuORF	ENST00000477267.1_1_10:102824694-102827451:+|nuORF	ENST00000477267.1_1_10:102824694-102827451:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.291748046875	2	436.28982	870.565087	2.865	0.00125	1.6954	0.00073969	4.5604	0.0019896	436.29039727042573	135.9	2.0052	134.35	134.01	136.01	-1.5437					90	40	3	0	0	0	0.73494	1	13166	13166		34.173	5.023	1	94245			2516	12275	1840	1849	3653	3653					0.12462671893706556
ARLPLEALL	9	Unmodified	_ARLPLEALL_					0	0	0		ENSG00000259571|ENST00000560104|BLID	ENSG00000259571|ENST00000560104|BLID	ENSG00000259571|ENST00000560104|BLID	MULTI-SECPEP	OvCa9_classI_Rep3	3	497.74395751953125	2	498.316035	994.617516	1.1775	0.00058677	-1.9579	-0.00097564	-0.78036	-0.00038887	498.3149338638454	126.13	0.73467	125.06	124.86	125.6	-1.0715					21	13	2	0	0	0	0.027462	1	9884	9884		40.778	3.6191	1	17503			2517	9487	1841	1850	3654	3654					0.11999210236660929
ARLQVALQI	9	Unmodified	_ARLQVALQI_					0	0	0		TNFRSF11A|p.N174Tfs*9|1|0.08|ENSG00000141655|chr18:62358338-62358338|C/-|frameshift_variant;nc|ENSG00000141655|Q9Y6Q6-4|TNFRSF11A;nc|ENSG00000141655|Q9Y6Q6-2|TNFRSF11A;nc|ENSG00000141655|Q9Y6Q6-3|TNFRSF11A;nc|ENSG00000141655|Q9Y6Q6-5|TNFRSF11A;nc|ENSG00000141655|Q9Y6Q6-6|TNFRSF11A;ENSG00000141655|ENST00000586569|TNFRSF11A	TNFRSF11A|p.N174Tfs*9|1|0.08|ENSG00000141655|chr18:62358338-62358338|C/-|frameshift_variant	TNFRSF11A|p.N174Tfs*9|1|0.08|ENSG00000141655|chr18:62358338-62358338|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	506.32061767578125	2	506.319109	1010.62366	2.104	0.0010653	-0.54691	-0.00027691	1.5571	0.00078839	506.31886831119834	108.48	0.60142	108.48	108.2	108.8	0					29	13	3	0	0	0	0.13482	1	12258	12258		87.754	7.8151	1	1734400			2518	4933	1842	1851	3655	3655					0.11877728468175519
ARLRATLQH	9	Unmodified	_ARLRATLQH_					0	0	0			REV__nc|ENSG00000140859|Q9BVG8-4|KIFC3	REV__nc|ENSG00000140859|Q9BVG8-4|KIFC3	MULTI-SECPEP	OvCa9_classI_Rep3	3	534.2925415039062	2	533.317432	1064.62031	1.9107	0.001019	0.15657	8.35E-05	2.0672	0.0011025	533.3174076603991	122.85	1.2532	121.82	121.27	122.52	-1.0286					51	23	3	0	0	0	0.027462	1	9536	9536		26.693	0	1	129020	+		2519	19704	1843	1852	3656	3656					0.09058478414181081
ARLRFIAI	8	Unmodified	_ARLRFIAI_					0	0	0			REV__ENST00000307063.8_1_5:159519224-159519386:-|nuORF	REV__ENST00000307063.8_1_5:159519224-159519386:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.79766845703125	2	480.311087	958.60762	-0.11153	-5.3571E-05	-1.6055	-0.00077112	-1.717	-0.00082469	480.3101647956179	105.61	0.90897	103.59	103.35	104.26	-2.0161					40	17	3	0	0	0	0.028476	1	9640	9640		35.201	0	1	111050	+		2520	24300	1844	1853	3657	3657					0.1266606702192803
ARLRFIAI	8	Unmodified	_ARLRFIAI_					0	0	0			REV__ENST00000307063.8_1_5:159519224-159519386:-|nuORF	REV__ENST00000307063.8_1_5:159519224-159519386:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	480.311087	958.60762	-0.9154	-0.00043967	-0.73507	-0.00035306	-1.6505	-0.00079274	480.3106005325962	104.04	1.1879	103.46	103.13	104.32	-0.57639	-0.078204	0.00069472	NaN	19.36	43	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100330	+		2521	24300	1844	1853							0.1266606702192803
ARLRFIAI	8	Unmodified	_ARLRFIAI_					0	0	0			REV__ENST00000307063.8_1_5:159519224-159519386:-|nuORF	REV__ENST00000307063.8_1_5:159519224-159519386:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	480.311087	958.60762	0.64077	0.00030777	-2.1831	-0.0010486	-1.5423	-0.00074079	480.30986548266196	104.91	1.0902	103.57	103.26	104.35	-1.3482	0.026939	-0.00069627	NaN	19.36	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106610	+		2522	24300	1844	1853							0.1266606702192803
ARLRKTQAE	9	Unmodified	_ARLRKTQAE_					0	0	0		ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.799072265625	2	536.814722	1071.61489	1.5996	0.00085868	2.0714	0.0011119	3.671	0.0019706	536.8157989372531	107	0.7617	107	106.72	107.48	0					27	17	2	0	0	0	0.027462	1	12035	12035		19.104	7.5925	1	689840			2523	4281	1845	1854	3658	3658					0.08194754831720275
ARLRQSVRS	9	Unmodified	_ARLRQSVRS_					0	0	0		ENST00000398701.2_1_10:75570658-75571450:-|nuORF	ENST00000398701.2_1_10:75570658-75571450:-|nuORF	ENST00000398701.2_1_10:75570658-75571450:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	536.8171997070312	2	536.820338	1071.62612	-1.1053	-0.00059333	-3.206	-0.0017211	-4.3113	-0.0023144	536.8184593215832	67.034	1.4822	64.373	64.099	65.581	-2.661					79	29	4	0	0	0	0.56889	1	5224	5224		35.618	1.4457	1	1131500			2524	11374	1846	1855	3659	3659					0.09317576925855064
ARLRQSVRS	9	Unmodified	_ARLRQSVRS_					0	0	0		ENST00000398701.2_1_10:75570658-75571450:-|nuORF	ENST00000398701.2_1_10:75570658-75571450:-|nuORF	ENST00000398701.2_1_10:75570658-75571450:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.8185424804688	2	536.820338	1071.62612	0.21032	0.0001129	-4.4325	-0.0023795	-4.2222	-0.0022666	536.8177736754573	67.975	1.5176	64.485	64.136	65.654	-3.4902					80	30	5	0	0	0	0.42676	1	5032	5032		49.442	11.63	1	1357400			2525	11374	1846	1855	3660	3660					0.09317576925855064
ARLRWFVT	8	Unmodified	_ARLRWFVT_					0	0	0		ENSG00000125531|ENST00000370097|FNDC11	ENSG00000125531|ENST00000370097|FNDC11	ENSG00000125531|ENST00000370097|FNDC11	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.8383178710938	2	524.806168	1047.59778	-1.1226	-0.00058917	-0.74922	-0.00039319	-1.8719	-0.00098237	524.8056681120617	101.39	1.239	100.63	100.02	101.26	-0.76401					38	24	2	0	0	0	0.028476	1	9313	9313		52.299	22.458	1	33103			2526	3715	1847	1856	3661	3661					0.07588879016566352
ARLSDILDI	9	Unmodified	_ARLSDILDI_					0	0	0			REV__ENSG00000157601|ENST00000398598|MX1;REV__ENSG00000183486|ENST00000330714|MX2	REV__ENSG00000183486|ENST00000330714|MX2	MULTI-MSMS	OvCa99_classI_Rep5	1	508.2954406738281	2	508.292756	1014.57096	1.9972	0.0010152	0.54842	0.00027876	2.5457	0.0012939	508.2927681121712	77.519	0.59145	77.519	77.293	77.884	0					26	13	3	0	0	0	0.16562	1	7826	7826		82.241	9.3613	1	838360	+		2527	22364;20525	1848	1857	3662	3662					0.06425725614712974
ARLSDILDI	9	Unmodified	_ARLSDILDI_					0	0	0			REV__ENSG00000157601|ENST00000398598|MX1;REV__ENSG00000183486|ENST00000330714|MX2	REV__ENSG00000183486|ENST00000330714|MX2	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	508.292756	1014.57096	1.9972	0.0010152	0.54842	0.00027876	2.5457	0.0012939	508.2927681121712	77.519	0.59145	77.519	77.293	77.884	0	0.023089	0.00019501	NaN	82.241	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	838360	+		2528	22364;20525	1848	1857							0.06425725614712974
ARLSDILDI	9	Unmodified	_ARLSDILDI_					0	0	0			REV__ENSG00000157601|ENST00000398598|MX1;REV__ENSG00000183486|ENST00000330714|MX2	REV__ENSG00000183486|ENST00000330714|MX2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	508.292756	1014.57096	0.023296	1.1841E-05	-0.56917	-0.00028931	-0.54587	-0.00027746	508.2919379560452	79.27	1.2732	77.53	76.855	78.128	-1.7398	0.033844	-0.00094112	NaN	82.241	32	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29523	+		2529	22364;20525	1848	1857							0.06425725614712974
ARLSDILDI	9	Unmodified	_ARLSDILDI_					0	0	0			REV__ENSG00000157601|ENST00000398598|MX1;REV__ENSG00000183486|ENST00000330714|MX2	REV__ENSG00000183486|ENST00000330714|MX2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	508.292756	1014.57096	-0.03861	-1.9625E-05	0.54165	0.00027532	0.50304	0.00025569	508.29280618477867	79.746	1.1102	77.406	76.852	77.962	-2.3399	-0.090178	0.00018813	NaN	82.241	36	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85730	+		2530	22364;20525	1848	1857							0.06425725614712974
ARLSDILDI	9	Unmodified	_ARLSDILDI_					0	0	0			REV__ENSG00000157601|ENST00000398598|MX1;REV__ENSG00000183486|ENST00000330714|MX2	REV__ENSG00000183486|ENST00000330714|MX2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	508.292756	1014.57096	-0.95809	-0.00048699	0.37306	0.00018962	-0.58503	-0.00029737	508.29263603675554	80.24	0.54132	77.529	77.269	77.81	-2.7106	0.033245	1.6736E-05	NaN	82.241	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74487	+		2531	22364;20525	1848	1857							0.06425725614712974
ARLTGHLSL	9	Unmodified	_ARLTGHLSL_					0	0	0		ENSG00000123989|ENST00000243776|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF	ENSG00000123989|ENST00000243776|CHPF	ENSG00000123989|ENST00000243776|CHPF	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.7861633300781	2	484.287808	966.561064	2.7758	0.0013443	-2.9047	-0.0014067	-0.12887	-6.2411E-05	484.2867576645659	100.8	0.5758	100.8	100.49	101.06	0					19	13	2	0	0	0	0.027459	1	11189	11189		22.58	0	1	443330			2532	3619	1849	1858	3663	3663					0.07644582400007494
ARLVGAALGAL	11	Unmodified	_ARLVGAALGAL_					0	0	0		ENSG00000204839|ENST00000398882|MROH6	ENSG00000204839|ENST00000398882|MROH6	ENSG00000204839|ENST00000398882|MROH6	MULTI-MSMS	OvCa99_classI_Rep5	1	506.3209533691406	2	506.319109	1010.62366	2.104	0.0010653	-0.54691	-0.00027691	1.5571	0.00078839	506.31886831119834	108.48	0.60142	108.48	108.2	108.8	0					29	13	3	0	0	0	0.38665	1	12284	12284		62.107	1.7038	1	1734400			2533	9030	1850	1859	3664	3664					0.11877728468175519
ARLVLGPALCP	11	Unmodified	_ARLVLGPALCP_					0	0	0			REV__ENST00000508722.5_1_5:34839321-34867279:+|nuORF	REV__ENST00000508722.5_1_5:34839321-34867279:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.3319091796875	2	555.328619	1108.64269	-0.53059	-0.00029465	3.7359	0.0020747	3.2053	0.00178	555.3306299398113	55.379	1.422	52.085	51.648	53.07	-3.2944					70	27	3	0	0	0	0.71498	1	3490	3490		24.519	0.31644	1	656980	+		2534	26916	1851	1860	3665	3665					0.09270941767590557
ARLWAHVY	8	Unmodified	_ARLWAHVY_					0	0	0		nc|ENSG00000078140|P61086-2|UBE2K;ENSG00000078140|ENST00000261427|UBE2K	nc|ENSG00000078140|P61086-2|UBE2K	nc|ENSG00000078140|P61086-2|UBE2K	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3346862792969	2	508.277244	1014.53993	0.82129	0.00041744	-3.5939	-0.0018267	-2.7726	-0.0014093	508.2753754260018	132.31	0.56572	132.31	132.09	132.65	0					18	11	2	0	0	0	0.028476	1	15376	15376		39.021	0	1	80208			2535	1587	1852	1861	3666	3666					0.03324617091129767
ARLYEVVVR	9	Unmodified	_ARLYEVVVR_					0	0	0			REV__ENSG00000180104|ENST00000512944|EXOC3	REV__ENSG00000180104|ENST00000512944|EXOC3	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.8302001953125	2	552.82984	1103.64513	-0.7273	-0.00040207	0.049405	2.7312E-05	-0.6779	-0.00037476	552.8298295070128	81.571	1.6515	78.861	78.494	80.145	-2.7106					90	33	4	0	0	0	0.38529	1	6729	6729		53.351	2.016	1	1054700	+		2536	22159	1853	1862	3667	3667					0.09745113496887825
ARMFESLPL	9	Unmodified	_ARMFESLPL_					0	0	0		ENSG00000109452|ENST00000262992|INPP4B;ENST00000512630.5_1_4:143007384-143094853:-|nuORF	ENSG00000109452|ENST00000262992|INPP4B	ENSG00000109452|ENST00000262992|INPP4B	MULTI-MSMS	OvCa99_classI_Rep5	1	532.2836303710938	2	532.283877	1062.5532	-2.0733	-0.0011036	-2.6426	-0.0014066	-4.7159	-0.0025102	532.2819304789259	103.84	2.217	103.84	103.14	105.36	0					90	51	4	0	0	0	0.40667	1	11593	11593		51.335	5.3632	1	16092000			2537	2712	1854	1863	3668	3668					0.024426870882280127
ARNGAGREAR	10	Unmodified	_ARNGAGREAR_					0	0	0			REV__ENST00000481822.1_1_1:155223346-155224854:-|nuORF	REV__ENST00000481822.1_1_1:155223346-155224854:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.3076171875	2	529.28412	1056.55369	1.1735	0.00062109	3.5874	0.0018988	4.7609	0.0025198	530.2884237992059	103.24	0.3717	103.24	103.01	103.39	0					14	8	3	0	0	0	0.026891	1	11548	11548		24.519	4.5224	1	454170	+		2538	26488	1855	1864	3669	3669					0.027672428522691916
ARNKHREAAPK	11	Unmodified	_ARNKHREAAPK_					0	0	0		ENSG00000173852|ENST00000638088|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	MULTI-MSMS	OvCa9_classI_Rep4_	4	639.3648071289062	2	639.362902	1276.71125	-4.0344	-0.0025795	4.3611	0.0027883	0.32669	0.00020888	639.3655564998056	154.53	1.1695	153.08	152.77	153.94	-1.4516					91	28	4	0	0	0	0.71321	1	15288	15288		25.126	2.5463	1	586460			2539	7422	1856	1865	3670	3670					0.08396322391649846
ARNVLGLVR	9	Unmodified	_ARNVLGLVR_					0	0	0			REV__ENST00000221086.7_1_8:11142021-11142231:+|nuORF	REV__ENST00000221086.7_1_8:11142021-11142231:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	499.3178405761719	2	499.3169	996.619247	0.089854	4.4866E-05	-0.61797	-0.00030856	-0.52811	-0.0002637	499.3165153465622	63.554	1.3305	63.554	63.257	64.588	0					79	32	4	0	0	0	0.21395	1	5708	5708		73.975	2.679	1	10118000	+		2540	23745	1857	1866	3671	3671					0.12080264045266631
ARPALLLLL	9	Unmodified	_ARPALLLLL_					0	0	0		ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	MULTI-MSMS	OvCa9_classI_Rep2	2	490.3357849121094	2	490.33677	978.658987	0.31976	0.00015679	-1.1553	-0.00056648	-0.83553	-0.00040969	490.3362879264998	135.18	3.9777	134.96	134.64	138.62	-0.22697					225	81	5	0	0	0	0.53957	1	13491	13491		38.806	1.7777	1	7114000			2541	8139	1858	1867	3672	3672					0.16880390996004735
ARPALLLLL	9	Unmodified	_ARPALLLLL_					0	0	0		ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.3365478515625	2	490.33677	978.658987	2.3125	0.0011339	-3.376	-0.0016554	-1.0635	-0.00052147	490.335203673426	137.13	5.8682	135.59	135.18	141.05	-1.5437					314	118	5	0	0	0	0.46377	1	13420	13420		45.952	5.3793	1	8417000			2542	8139	1858	1867	3673	3673					0.16880390996004735
ARPALLLLLP	10	Unmodified	_ARPALLLLLP_					0	0	0		ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	MULTI-MSMS	OvCa9_classI_Rep3	3	538.8629150390625	2	538.863152	1075.71175	0.50313	0.00027112	-1.3946	-0.0007515	-0.89148	-0.00048038	538.8625358740957	133.13	11.263	132	131.63	142.9	-1.1249					494	228	5	0	0	0	0.64063	1	10869	10869		37.159	6.6555	1	10229000			2543	8139	1859	1868	3674	3674					0.17692349058802392
ARPAPRRSH	9	Unmodified	_ARPAPRRSH_					0	0	0			REV__ENST00000342854.9_2_5:133450446-133450680:+|nuORF	REV__ENST00000342854.9_2_5:133450446-133450680:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7691650390625	2	524.299573	1046.58459	-0.93267	-0.000489	1.1135	0.0005838	0.18082	9.4804E-05	524.3003140583484	51.768	0.54298	51.768	51.627	52.17	0					19	12	2	0	0	0	0.027462	1	4001	4001		10.265	3.5297	1	235900	+		2544	24655	1860	1869	3675	3675					0.06316440957175473
ARPARLAEA	9	Unmodified	_ARPARLAEA_					0	0	0			REV__nc|ENSG00000128309|P25325|MPST	REV__nc|ENSG00000128309|P25325|MPST	MULTI-MSMS	OvCa9_classI_Rep2	2	477.7773742675781	2	477.777608	953.540663	0.30924	0.00014775	-0.9987	-0.00047716	-0.68946	-0.00032941	477.7771636832581	43.542	2.3879	40.832	40.509	42.897	-2.7097					104	47	3	0	0	0	0.3076	1	2427	2427		62.107	0	1	3363800	+		2545	18851	1861	1870	3676	3676					0.06203411740159481
ARPGLPSLL	9	Unmodified	_ARPGLPSLL_					0	0	0		nc|ENSG00000138744|Q02083-3|NAAA;nc|ENSG00000138744|Q02083-2|NAAA;ENSG00000138744|ENST00000286733|NAAA;ENST00000503636.1_1_4:76861152-76862102:-|nuORF	nc|ENSG00000138744|Q02083-3|NAAA	nc|ENSG00000138744|Q02083-3|NAAA	MULTI-MSMS	OvCa9_classI_Rep2	2	462.28692626953125	2	462.287277	922.560001	-0.082447	-3.8114E-05	-0.18267	-8.4446E-05	-0.26512	-0.00012256	462.2870685327716	97.397	1.6223	96.438	95.97	97.592	-0.95856					88	32	4	0	0	0	0.11471	1	8824	8824		93.195	10.955	1	674170			2546	4720	1862	1871	3677	3677					0.09562368031083679
ARPGWIFLL	9	Unmodified	_ARPGWIFLL_					0	0	0		ENST00000591419.2_2_19:10613109-10613358:-|nuORF	ENST00000591419.2_2_19:10613109-10613358:-|nuORF	ENST00000591419.2_2_19:10613109-10613358:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	536.8169555664062	2	536.818744	1071.62294	-1.1053	-0.00059333	-0.23678	-0.00012711	-1.3421	-0.00072044	536.8184593215832	67.034	1.4822	64.373	64.099	65.581	-2.661					79	29	4	0	0	0	0.39645	1	5213	5213		52.299	15.14	1	1131500			2547	14119	1863	1872	3678	3678					0.08998933819134436
ARPHVARSP	9	Unmodified	_ARPHVARSP_					0	0	0		nc|ENSG00000234636|P0DP75|MED14OS;ENST00000456333.2_1_X:40594682-40597507:+|nuORF	nc|ENSG00000234636|P0DP75|MED14OS	nc|ENSG00000234636|P0DP75|MED14OS	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.7825012207031	2	495.783225	989.551896	-1.0728	-0.00053187	-3.6799	-0.0018245	-4.7527	-0.0023563	495.7812739834416	44.548	2.2506	41.51	40.762	43.013	-3.0385					117	43	4	0	0	0	0.33652	1	2267	2267		58.782	0	1	1208700			2548	12109	1864	1873	3679	3679					0.05670233834314331
ARPIEMNTSF	10	Unmodified	_ARPIEMNTSF_					0	0	0			REV__ENSG00000204406|ENST00000642680|MBD5	REV__ENSG00000204406|ENST00000642680|MBD5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	582.8055419921875	2	583.287148	1164.55974	-0.80115	-0.0004673	1.1941	0.00069648	0.39291	0.00022918	584.2880022177358	76.153	1.0506	73.214	72.594	73.645	-2.9389					49	21	4	0	0	0	0.026826	1	5987	5987		22.58	12.874	1	84928	+		2549	23153	1865	1874	3680	3680					-0.01595419751083682
ARPIEMNTSF	10	Unmodified	_ARPIEMNTSF_					0	0	0			REV__ENSG00000204406|ENST00000642680|MBD5	REV__ENSG00000204406|ENST00000642680|MBD5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	583.287148	1164.55974	-1.7773	-0.0010367	6.403	0.0037348	4.6256	0.0026981	583.2905910403746	75.347	0.55128	72.936	72.726	73.278	-2.4106	-0.13927	0.0013361	NaN	22.58	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28645	+		2550	23153	1865	1874							-0.01595419751083682
ARPIQLLF	8	Unmodified	_ARPIQLLF_					0	0	0			REV__nc|ENSG00000104755|Q99965-2|ADAM2	REV__nc|ENSG00000104755|Q99965-2|ADAM2	MULTI-MSMS	OvCa9_classI_Rep3	3	479.2974853515625	2	479.297645	956.580737	-0.26237	-0.00012575	0.061204	2.9335E-05	-0.20117	-9.6419E-05	479.29752817551383	116.42	1.3352	115.38	115	116.33	-1.0414					70	26	3	0	0	0	0.71369	1	8726	8726		40.573	1.7665	1	529340	+		2551	17678	1866	1875	3681	3681					0.10070958410756248
ARPKAPLAR	9	Unmodified	_ARPKAPLAR_					0	0	0			REV__ENSG00000154783|ENST00000285046|FGD5	REV__ENSG00000154783|ENST00000285046|FGD5	MULTI-SECPEP	OvCa9_classI_Rep3	3	490.3367004394531	2	490.311618	978.608683	-1.5393	-0.00075473	-2.3523	-0.0011533	-3.8915	-0.0019081	490.3104391394206	136.83	0.29492	135.75	135.61	135.9	-1.0858					12	5	3	0	0	0	0.027462	1	11132	11132		27.882	0	1	34460	+		2552	20398	1867	1876	3682	3682					0.11852281390827102
ARPKKHTT	8	Unmodified	_ARPKKHTT_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1;RIOK1|p.D526G|1|0.16|ENSG00000124784|chr6:7414371-7414371|A/G|missense_variant	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	469.77923583984375	2	469.780151	937.545748	-1.4786	-0.00069463	-3.3895	-0.0015923	-4.8681	-0.002287	469.77947495709054	148.29	1.0014	146.85	146.12	147.13	-1.435					26	19	2	0	0	0	0.75241	1	14610	14610		25.45	3.7478	1	36841			2553	3680	1868	1877	3683	3683					0.0744771560279105
ARPKKHTT	8	Unmodified	_ARPKKHTT_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1;RIOK1|p.D526G|1|0.16|ENSG00000124784|chr6:7414371-7414371|A/G|missense_variant	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	469.780151	937.545748	-2.673	-0.0012557	-0.69424	-0.00032614	-3.3673	-0.0015819	469.7800129884504	147.41	0.59494	147.18	147.02	147.62	-0.22697	0.16418	0.00049427	NaN	25.45	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12526			2554	3680	1868	1877							0.0744771560279105
ARPLPLPLL	9	Unmodified	_ARPLPLPLL_					0	0	0			REV__ENST00000582478.5_1_17:80008786-80009642:-|nuORF	REV__ENST00000582478.5_1_17:80008786-80009642:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	496.29998779296875	2	495.328945	988.643337	1.2242	0.00060638	-0.49456	-0.00024497	0.72964	0.00036141	495.328158709075	123.2	0.26251	122.16	122.05	122.31	-1.0377					6	4	2	0	0	0	0.027462	1	9497	9497		24.203	7.7296	1	7549.6	+		2555	21479	1869	1878	3684	3684					0.14856104478940324
ARPNRCVRDQ	10	Unmodified	_ARPNRCVRDQ_					0	0	0			REV__UBXN10|p.K43Rfs*100|1|0.04|ENSG00000162543|chr1:20190686-20190686|C/-|frameshift_variant	REV__UBXN10|p.K43Rfs*100|1|0.04|ENSG00000162543|chr1:20190686-20190686|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	608.8086547851562	2	607.812187	1213.60982	-0.32576	-0.000198	3.3696	0.0020481	3.0438	0.0018501	608.3160873719464	68.274	0.37193	68.274	68.192	68.564	0					14	8	2	0	0	0	0.026942	1	6456	6456		9.7057	0	1	200920	+		2556	32747	1870	1879	3685	3685					0.011561276974362045
ARPPRPVTRT	10	Unmodified	_ARPPRPVTRT_					0	0	0		ENST00000526036.1_1_11:74204479-74204806:+|nuORF	ENST00000526036.1_1_11:74204479-74204806:+|nuORF	ENST00000526036.1_1_11:74204479-74204806:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8423461914062	2	575.843813	1149.67307	-2.8608	-0.0016474	1.7444	0.0010045	-1.1164	-0.00064289	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.78463	1	14464	14464		20.947	2.6225	1	356230			2557	13209	1871	1880	3686	3686					0.10422436476960684
ARPRAAGAASA	11	Unmodified	_ARPRAAGAASA_					0	0	0			REV__ENST00000544485.1_2_12:121712202-121735049:-|nuORF	REV__ENST00000544485.1_2_12:121712202-121735049:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.82269287109375	2	499.778139	997.541725	-0.71041	-0.00035505	-4.3347	-0.0021664	-5.0451	-0.0025214	499.7760559749815	50.602	0.61521	50.602	50.421	51.036	0					19	13	2	0	0	0	0.025681	1	3880	3880		26.693	8.3685	1	344940	+		2558	27398	1872	1881	3687	3687					0.04285626109071927
ARPRKTGHAL	10	Unmodified	_ARPRKTGHAL_					0	0	0		ENSG00000171617|ENST00000302351|ENC1;nc|ENSG00000171617|O14682-2|ENC1	ENSG00000171617|ENST00000302351|ENC1	ENSG00000171617|ENST00000302351|ENC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8318481445312	2	553.830706	1105.64686	1.4061	0.00077877	-2.5843	-0.0014313	-1.1781	-0.00065248	553.8291816775361	139.45	3.0735	137.95	136.76	139.84	-1.4952					150	61	3	0	0	0	0.74374	1	13755	13755		25.574	1.3713	1	110800			2559	7220	1873	1882	3688	3688					0.09826167305527633
ARPSRPGGPQ	10	Unmodified	_ARPSRPGGPQ_					0	0	0		ENSG00000164694|ENST00000297267|FNDC1;nc|ENSG00000164694|Q4ZHG4-2|FNDC1	ENSG00000164694|ENST00000297267|FNDC1	ENSG00000164694|ENST00000297267|FNDC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.3512573242188	2	511.778139	1021.54173	1.5757	0.00080639	0.092885	4.7536E-05	1.6685	0.00085392	511.77813205808326	130.23	0.71349	130.23	129.87	130.58	0					38	14	4	0	0	0	0.026659	1	15150	15150		37.812	8.662	1	558830			2560	6478	1874	1883	3689	3689					0.03181626109096669
ARPVLPLL	8	Unmodified	_ARPVLPLL_					0	0	0			REV__ENST00000316097.12_1_19:1924295-1924604:+|nuORF	REV__ENST00000316097.12_1_19:1924295-1924604:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	439.79461669921875	2	439.794738	877.574923	1.2945	0.00056932	-1.0724	-0.00047163	0.22213	9.769E-05	439.79412417711336	110.95	1.5288	110.81	110.34	111.86	-0.13961					80	30	4	0	0	0	0.64377	2	10469	10469;10481		54.765	10.234	1	290020	+		2561	24404	1875	1884	3690;3691	3690					0.13123859899098989
ARPVLPLL	8	Unmodified	_ARPVLPLL_					0	0	0			REV__ENST00000316097.12_1_19:1924295-1924604:+|nuORF	REV__ENST00000316097.12_1_19:1924295-1924604:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	439.79461669921875	2	439.794738	877.574923	2.1512	0.00094608	-2.0115	-0.00088466	0.13966	6.1422E-05	439.7937294670286	112.09	1.5248	110.98	110.55	112.07	-1.1038					83	30	4	0	0	0	0.59103	1	8180	8180		65.897	8.4448	1	308550	+		2562	24404	1875	1884	3692	3692					0.13123859899098989
ARPVPVVGR	9	Unmodified	_ARPVPVVGR_					0	0	0		ENST00000361361.6_1_1:155224850-155225021:-|nuORF	ENST00000361361.6_1_1:155224850-155225021:-|nuORF	ENST00000361361.6_1_1:155224850-155225021:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	475.79840087890625	2	475.798343	949.582134	-1.1416	-0.00054318	1.0631	0.00050583	-0.078494	-3.7347E-05	475.7987527158406	55.46	1.1933	52.646	52.022	53.215	-2.8139					74	23	4	0	0	0	0.70177	1	3868	3868		17.365	1.7287	1	547610			2563	10794	1876	1885	3693	3693					0.10532592499521343
ARQAVTVPQ	9	Unmodified	_ARQAVTVPQ_					0	0	0			REV__ADNP2|p.G314R|1|0.13|ENSG00000101544|chr18:80136353-80136353|G/C|missense_variant	REV__ADNP2|p.G314R|1|0.13|ENSG00000101544|chr18:80136353-80136353|G/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.2403564453125	2	485.277441	968.540328	-0.013247	-6.4286E-06	-2.6584	-0.0012901	-2.6717	-0.0012965	485.27581247787424	52.597	0.65615	52.597	52.259	52.915	0					17	14	2	0	0	0	0.027462	1	4086	4086		31.53	1.2121	1	161840	+		2564	15574	1877	1886	3694	3694					0.05479992020332247
ARQCLLKNI	9	Unmodified	_ARQCLLKNI_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.3346557617188	2	529.810593	1057.60663	-0.83071	-0.00044012	-3.6557	-0.0019368	-4.4864	-0.002377	529.8084518429732	96.761	1.1776	94.933	94.571	95.749	-1.8286					41	22	3	0	0	0	0.027462	1	6440	6440		29.15	7.4472	1	95582			2565	3504	1878	1887	3695	3695					0.08013484590742337
ARQCLLKNI	9	Unmodified	_ARQCLLKNI_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	529.810593	1057.60663	-0.58535	-0.00031012	-4.0503	-0.0021459	-4.6356	-0.002456	529.808178916011	95.957	0.89555	94.929	94.615	95.51	-1.0281	-0.0051794	0.00011562	NaN	29.15	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83727			2566	3504	1878	1887							0.08013484590742337
ARQCLLKNI	9	Unmodified	_ARQCLLKNI_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	529.810593	1057.60663	0.071715	3.7996E-05	-4.6968	-0.0024884	-4.6251	-0.0024504	529.8078098441872	97.319	1.0135	94.94	94.611	95.624	-2.3786	0.0063997	-0.00056941	NaN	29.15	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107600			2567	3504	1878	1887							0.08013484590742337
ARQDVKPDI	9	Unmodified	_ARQDVKPDI_					0	0	0		nc|ENSG00000187391|Q86UL8-2|MAGI2;ENSG00000187391|ENST00000354212|MAGI2	nc|ENSG00000187391|Q86UL8-2|MAGI2	nc|ENSG00000187391|Q86UL8-2|MAGI2	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.858642578125	2	521.288005	1040.56146	1.9032	0.0009921	3.9528	0.0020606	5.856	0.0030527	521.2898290231622	86.252	0.31752	86.252	86.033	86.35	0					11	7	2	0	0	0	0.027403	1	9089	9089		63.534	0	1	123270			2568	8399	1879	1888	3696	3696					0.04279957329163153
ARQEKGLSPMN	11	Unmodified	_ARQEKGLSPMN_					0	0	0		tr|A0A553SSI1|A0A553SSI1_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03050PE=4SV=1	tr|A0A553SSI1|A0A553SSI1_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03050PE=4SV=1	tr|A0A553SSI1|A0A553SSI1_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03050PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	615.8214111328125	2	615.816604	1229.61866	1.2485	0.00076883	1.4142	0.00087089	2.6627	0.0016397	615.8172319334232	146.31	1.0842	146.31	145.93	147.01	0					30	21	3	0	0	0	0.62561	1	17117	17117		42.338	2.2799	1	104550			2569	34376	1880	1889	3697	3697					0.013030565432700314
ARQKVHMAGL	10	Unmodified	_ARQKVHMAGL_					0	0	0		ENST00000537045.5_1_22:19023939-19024314:-|nuORF	ENST00000537045.5_1_22:19023939-19024314:-|nuORF	ENST00000537045.5_1_22:19023939-19024314:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	555.8145751953125	2	555.813667	1109.61278	1.0537	0.00058565	0.21609	0.0001201	1.2698	0.00070575	555.8135539205268	157.95	0.39517	157.95	157.75	158.15	0					14	7	3	0	0	0	0.58282	1	18514	18514		44.117	8.9648	1	53966			2570	13399	1881	1890	3698	3698					0.06236002822265618
ARQLVEIA	8	Unmodified	_ARQLVEIA_					0	0	0		nc|ENSG00000153956|P54289-4|CACNA2D1;nc|ENSG00000153956|P54289-5|CACNA2D1;nc|ENSG00000153956|P54289-3|CACNA2D1;ENSG00000153956|ENST00000356860|CACNA2D1;nc|ENSG00000153956|P54289|CACNA2D1;CACNA2D1|p.N509Qfs*10|1|0.07|ENSG00000153956|chr7:82005492-82005493|-/A|frameshift_variant	nc|ENSG00000153956|P54289-4|CACNA2D1	nc|ENSG00000153956|P54289-4|CACNA2D1	MULTI-MSMS	OvCa9_classI_Rep2	2	450.2683410644531	2	450.269084	898.523616	1.3254	0.0005968	-1.7002	-0.00076554	-0.37475	-0.00016874	450.2680012991639	61.146	3.3168	58.387	57.67	60.987	-2.7593					139	63	5	0	0	0	0.65062	1	4510	4510		53.351	2.016	1	6706400			2571	5704	1882	1891	3699	3699					0.07029491134369437
ARQMLLSL	8	Unmodified	_ARQMLLSL_					0	0	0		ENST00000439741.3_2_1:149908572-149908737:-|nuORF;ENST00000466496.5_1_1:149902724-149908701:-|nuORF	ENST00000439741.3_2_1:149908572-149908737:-|nuORF	ENST00000439741.3_2_1:149908572-149908737:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.75946044921875	2	466.273312	930.532072	0.14373	6.7019E-05	-3.3801	-0.0015761	-3.2364	-0.0015091	466.27132376377915	32.772	0.19325	32.772	32.651	32.844	0					5	3	2	0	0	0	0.028476	1	1450	1450		50.025	7.5501	1	13703			2572	11920	1883	1892	3700	3700					0.06402721779363674
ARQMQQKMK	9	Unmodified	_ARQMQQKMK_					0	0	0		ENSG00000133104|ENST00000438666|SPART;ENST00000495510.1_1_13:36900679-36920374:-|nuORF	ENSG00000133104|ENST00000438666|SPART	ENSG00000133104|ENST00000438666|SPART	MULTI-SECPEP	OvCa9_classI_Rep2	2	574.8359375	2	574.804985	1147.59542	-2.2236	-0.0012782	-1.8192	-0.0010457	-4.0428	-0.0023238	574.8041292834562	118.24	0.64619	118.09	117.94	118.58	-0.14755					19	12	2	0	0	0	0.027462	1	11359	11359		44.117	17.424	1	13990			2573	4198	1884	1893	3701	3701					0.027523392249349854
ARQMQQKMK	9	Unmodified	_ARQMQQKMK_					0	0	0		ENSG00000133104|ENST00000438666|SPART;ENST00000495510.1_1_13:36900679-36920374:-|nuORF	ENSG00000133104|ENST00000438666|SPART	ENSG00000133104|ENST00000438666|SPART	MULTI-MATCH	OvCa9_classI_Rep3	3		2	574.804985	1147.59542	-0.21225	-0.000122	-3.7523	-0.0021568	-3.9645	-0.0022788	574.8027914313551	119.23	0.74441	118.2	117.98	118.72	-1.0271	0.047581	-0.0012842	NaN	35.618	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16632			2574	4198	1884	1893							0.027523392249349854
ARQMQQKMK	9	Unmodified	_ARQMQQKMK_					0	0	0		ENSG00000133104|ENST00000438666|SPART;ENST00000495510.1_1_13:36900679-36920374:-|nuORF	ENSG00000133104|ENST00000438666|SPART	ENSG00000133104|ENST00000438666|SPART	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	574.804985	1147.59542	-1.9761	-0.0011358	-2.1587	-0.0012408	-4.1348	-0.0023767	574.8043700277466	119.52	0.57484	118.17	117.88	118.46	-1.3444	0.017242	0.00054779	NaN	35.618	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14707			2575	4198	1884	1893							0.027523392249349854
ARQRKAFLN	9	Unmodified	_ARQRKAFLN_					0	0	0		ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000111642|Q14839-2|CHD4;ENSG00000111642|ENST00000544040|CHD4	ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000111642|Q14839-2|CHD4	nc|ENSG00000111642|Q14839-2|CHD4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.3517456054688	2	552.325257	1102.63596	0.08022	4.4308E-05	3.6729	0.0020286	3.7531	0.0020729	552.3273904029028	90.527	0.61559	87.952	87.801	88.417	-2.575					14	11	2	0	0	0	0.027462	1	7834	7834		29.15	15.012	1	13756			2576	14960;3168	1885	1894	3702	3702					0.08874764931215395
ARQRKAFLN	9	Unmodified	_ARQRKAFLN_					0	0	0		ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000111642|Q14839-2|CHD4;ENSG00000111642|ENST00000544040|CHD4	ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000111642|Q14839-2|CHD4	nc|ENSG00000111642|Q14839-2|CHD4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	552.325257	1102.63596	2.4655	0.0013617	-0.44606	-0.00024637	2.0194	0.0011154	552.3250814396756	89.097	0.39529	87.73	87.576	87.971	-1.3676	-0.1614	-0.0015256	NaN	21.96	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11872			2577	14960;3168	1885	1894							0.08874764931215395
ARQRKAFLN	9	Unmodified	_ARQRKAFLN_					0	0	0		ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000111642|Q14839-2|CHD4;ENSG00000111642|ENST00000544040|CHD4	ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000111642|Q14839-2|CHD4	nc|ENSG00000111642|Q14839-2|CHD4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	552.325257	1102.63596	-1.0143	-0.0005602	5.0942	0.0028137	4.08	0.0022535	552.3276456836202	90.072	0.46181	87.991	87.747	88.209	-2.0805	0.10033	0.0045945	NaN	21.96	15	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26418			2578	14960;3168	1885	1894							0.08874764931215395
ARQTLLLA	8	Unmodified	_ARQTLLLA_					0	0	0		ENSG00000254656|ENST00000649591|RTL1	ENSG00000254656|ENST00000649591|RTL1	ENSG00000254656|ENST00000649591|RTL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	443.76043701171875	2	443.279452	884.544351	-0.53681	-0.00023796	0.38481	0.00017058	-0.15201	-6.7381E-05	443.2795445001453	104.27	1.295	102.16	101.85	103.15	-2.1192					39	24	2	0	0	0	0.028476	1	9456	9456		38.806	0	1	82984			2579	9449	1886	1895	3703	3703					0.09746081514026628
ARRAPSPTV	9	Unmodified	_ARRAPSPTV_					0	0	0		ENST00000540658.1_1_12:130881908-130892327:-|nuORF;ENSG00000060709|ENST00000690449|RIMBP2	ENST00000540658.1_1_12:130881908-130892327:-|nuORF	ENST00000540658.1_1_12:130881908-130892327:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	477.77655029296875	2	477.777608	953.540663	0.30924	0.00014775	-0.9987	-0.00047716	-0.68946	-0.00032941	477.7771636832581	43.542	2.3879	40.832	40.509	42.897	-2.7097					104	47	3	0	0	0	0.42676	1	2415	2415		49.442	1.7842	1	3363800			2580	1264	1887	1896	3704	3704					0.062034117401822186
ARRAPSPTV	9	Unmodified	_ARRAPSPTV_					0	0	0		ENST00000540658.1_1_12:130881908-130892327:-|nuORF;ENSG00000060709|ENST00000690449|RIMBP2	ENST00000540658.1_1_12:130881908-130892327:-|nuORF	ENST00000540658.1_1_12:130881908-130892327:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.7783203125	2	477.777608	953.540663	-0.82611	-0.0003947	0.0037772	1.8047E-06	-0.82233	-0.00039289	477.7776089014007	43.823	3.0314	40.816	40.483	43.515	-3.0074					146	58	4	0	0	0	0.51865	1	2149	2149		40.778	0	1	12741000			2581	1264	1887	1896	3705	3705					0.062034117401822186
ARRDGVRKV	9	Unmodified	_ARRDGVRKV_					0	0	0		ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	MULTI-MSMS	OvCa99_classI_Rep5	1	528.8228149414062	2	528.822881	1055.63121	-0.38182	-0.00020192	0.13817	7.3065E-05	-0.24365	-0.00012885	528.8228274960426	23.422	0.59025	23.422	23.246	23.836	0					22	11	3	0	0	0	0.37135	1	324	324		54.776	5.3348	1	282850			2582	5596	1888	1897	3706	3706					0.10561880788463895
ARREAATQL	9	Unmodified	_ARREAATQL_					0	0	0		HBS1L|p.N217Kfs*64|1|0.04|ENSG00000112339|chr6:134997545-134997546|-/AATCAGCTTATGATTTTTACTGTTTTTTTTC|frameshift_variant	HBS1L|p.N217Kfs*64|1|0.04|ENSG00000112339|chr6:134997545-134997546|-/AATCAGCTTATGATTTTTACTGTTTTTTTTC|frameshift_variant	HBS1L|p.N217Kfs*64|1|0.04|ENSG00000112339|chr6:134997545-134997546|-/AATCAGCTTATGATTTTTACTGTTTTTTTTC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.8142395019531	2	508.285797	1014.55704	-0.44489	-0.00022613	-1.5822	-0.00080421	-2.0271	-0.0010303	508.78514928053323	58.519	1.1525	55.127	54.752	55.904	-3.392					58	22	4	0	0	0	0.027462	1	3817	3817		34.173	1.3601	1	293400			2583	14390	1889	1898	3707	3707					0.050344929062816846
ARRELHTGR	9	Unmodified	_ARRELHTGR_					0	0	0		tr|A0A553SSW4|A0A553SSW4_NIACISulfataseOS=NialliacirculansOX=1397GN=CEQ21_03910PE=4SV=1	tr|A0A553SSW4|A0A553SSW4_NIACISulfataseOS=NialliacirculansOX=1397GN=CEQ21_03910PE=4SV=1	tr|A0A553SSW4|A0A553SSW4_NIACISulfataseOS=NialliacirculansOX=1397GN=CEQ21_03910PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.3247680664062	2	548.310138	1094.60572	0.76502	0.00041947	-0.2103	-0.00011531	0.55472	0.00030416	548.8119741479932	124.27	0.54839	124.27	124.01	124.56	0					27	11	4	0	0	0	0.027462	1	14319	14319		14.865	0	1	195660			2584	34427	1890	1899	3708	3708					0.06220406266015743
ARRFLSPSE	9	Unmodified	_ARRFLSPSE_					0	0	0		L1PA3_dup10510|chr20:40619323-40625356:+|1.448906025747238|0.1317034148076854|3.46|417.0|208|1|anti-sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.448906025747238|0.1317034148076854|3.46|417.0|208|1|anti-sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.448906025747238|0.1317034148076854|3.46|417.0|208|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.2885131835938	2	531.788173	1061.56179	2.4615	0.001309	3.9757	0.0021142	6.4372	0.0034232	531.7897637048532	98.898	0.27776	98.898	98.638	98.916	0					10	6	2	0	0	0	0.027462	1	10878	10878		38.806	3.6054	1	825210			2585	14673	1891	1900	3709	3709					0.03347377049044553
ARRFSKNLF	9	Unmodified	_ARRFSKNLF_					0	0	0			REV__nc|ENSG00000164270|Q13639-7|HTR4	REV__nc|ENSG00000164270|Q13639-7|HTR4	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.7651977539062	2	569.827632	1137.64071	-0.73208	-0.00041716	3.1413	0.00179	2.4092	0.0013728	569.8292285512078	42.182	0.34812	42.182	42.024	42.372	0					12	7	2	0	0	0	0.027462	1	2694	2694		34.173	6.2903	1	250190	+		2586	20964	1892	1901	3710	3710					0.07739649073982946
ARRGGVKRI	9	Unmodified	_ARRGGVKRI_					0	0	0		ENSG00000278705|ENST00000377745|H4C2;ENSG00000278637|ENST00000617569|H4C1;ENSG00000277157|ENST00000614247|H4C4;ENSG00000276966|ENST00000615164|H4C5;ENSG00000276180|ENST00000615353|H4C9;ENSG00000275126|ENST00000618305|H4C13;ENSG00000274618|ENST00000244537|H4C6;ENSG00000273542|ENST00000611927|H4C12;ENSG00000270882|ENST00000578186|H4C14;ENSG00000270276|ENST00000579512|H4C15;ENSG00000197837|ENST00000539745|H4C16;ENSG00000197238|ENST00000355057|H4C11;ENSG00000197061|ENST00000377803|H4C3;ENSG00000158406|ENST00000377727|H4C8	ENSG00000278705|ENST00000377745|H4C2	ENSG00000278705|ENST00000377745|H4C2	MULTI-MSMS	OvCa99_classI_Rep5	1	506.8278503417969	2	506.827966	1011.64138	-0.49763	-0.00025221	-0.016497	-8.361E-06	-0.51412	-0.00026057	506.8280160423583	24.713	1.1074	24.713	24.536	25.643	0					48	21	5	0	0	0	0.36502	1	472	472		55.504	10.973	1	2218800			2587	5949	1893	1902	3711	3711					0.13602488513697608
ARRIYVETE	9	Unmodified	_ARRIYVETE_					0	0	0		ENST00000401533.6_1_2:26411122-26411461:+|nuORF	ENST00000401533.6_1_2:26411122-26411461:+|nuORF	ENST00000401533.6_1_2:26411122-26411461:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.8263549804688	2	568.806562	1135.59857	-0.1498	-8.521E-05	1.8979	0.0010795	1.7481	0.00099432	568.8075040034314	71.471	0.51846	71.471	71.15	71.668	0					19	12	2	0	0	0	0.027462	1	6872	6872		20.947	0	1	435220			2588	11416	1894	1903	3712	3712					0.03619628874935188
ARRKRKSV	8	Unmodified	_ARRKRKSV_					0	0	0		ENSG00000189357|ENST00000419782|SPATA31D4;ENSG00000186788|ENST00000445385|SPATA31D3	ENSG00000189357|ENST00000419782|SPATA31D4	ENSG00000189357|ENST00000419782|SPATA31D4	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.2890625	2	500.827966	999.64138	-0.20112	-0.00010073	3.7058	0.001856	3.5047	0.0017552	500.8296075279838	43.051	0.30064	43.051	42.926	43.227	0					9	6	2	0	0	0	0.028476	1	2808	2808		18.324	0	1	114610			2589	8361	1895	1904	3713	3713					0.1415448851370229
ARRKRSPHC	9	Carbamidomethyl (C)	_ARRKRSPHC(Carbamidomethyl (C))_	ARRKRSPHC(1)		ARRKRSPHC(48)		0	1	0			REV__ENSG00000184344|ENST00000329913|GDF3	REV__ENSG00000184344|ENST00000329913|GDF3	MULTI-MSMS	OvCa9_classI_Rep2	2	584.31640625	2	584.31744	1166.62033	-2.3838	-0.0013929	1.7025	0.00099478	-0.68133	-0.00039811	584.3183343503605	35.539	1.4389	32.829	32.503	33.942	-2.7097					76	28	4	0	0	0	0.44568	1	1438	1438		47.657	10.498	1	473780	+		2590	22423	1896	1905	3714	3714	259				0.04368155142537944
ARRKVPLDI	9	Unmodified	_ARRKVPLDI_					0	0	0			REV__nc|ENSG00000210082|Q8IVG9|MT-RNR2	REV__nc|ENSG00000210082|Q8IVG9|MT-RNR2	MULTI-MSMS	OvCa9_classI_Rep2	2	534.3365478515625	2	534.337833	1066.66111	-1.8836	-0.0010065	1.4667	0.00078373	-0.4169	-0.00022277	534.3385363027232	49.37	2.527	46.609	45.829	48.356	-2.7603					129	50	4	0	0	0	0.61208	1	3147	3147		30.504	2.6214	1	911830	+		2591	29109	1897	1906	3715	3715					0.1304481973379552
ARRLRARGFP	10	Unmodified	_ARRLRARGFP_					0	0	0		nc|ENSG00000144045|Q8TE96-2|DQX1;ENSG00000144045|ENST00000404568|DQX1	nc|ENSG00000144045|Q8TE96-2|DQX1	nc|ENSG00000144045|Q8TE96-2|DQX1	MULTI-MSMS	OvCa99_classI_Rep5	1	400.5790100097656	3	400.579257	1198.71594	1.2432	0.00049802	-2.4204	-0.00096957	-1.1772	-0.00047155	400.5782570920122	42.949	0.59933	42.949	42.753	43.353	0					31	13	4	0	0	0	0.65849	1	2803	2803		35.152	1.2304	1	1035100			2592	5126	1898	1907	3716	3716					0.1245325132506423
ARRLRGAPI	9	Unmodified	_ARRLRGAPI_					0	0	0			REV__ENST00000407117.6_1_22:38234565-38240173:-|nuORF	REV__ENST00000407117.6_1_22:38234565-38240173:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	505.322021484375	2	505.322517	1008.63048	0.014871	7.5146E-06	2.4068	0.0012162	2.4217	0.0012237	505.3237024434363	132.38	1.7261	132.15	131.83	133.56	-0.22696					82	34	4	0	0	0	0.52083	2	13081	13068;13081		40.573	8.3025	1	382540	+		2593	17370	1899	1908	3717;3718	3718					0.12651086139408108
ARRNPEPLR	9	Unmodified	_ARRNPEPLR_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-3|NDUFC2;nc|ENSG00000259112|E9PQ53|NDUFC2-KCTD14	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.7997436523438	2	554.820338	1107.62612	0.1007	5.5868E-05	-3.8746	-0.0021497	-3.7739	-0.0020938	554.8184040998818	62.475	0.58842	59.017	58.815	59.403	-3.4577					15	11	2	0	0	0	0.027441	1	4366	4366		58.782	21.623	1	20349			2594	5549	1900	1909	3719	3719					0.0766157692582965
ARRNPEPLR	9	Unmodified	_ARRNPEPLR_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2;nc|ENSG00000151366|O95298-3|NDUFC2;nc|ENSG00000259112|E9PQ53|NDUFC2-KCTD14	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	554.820338	1107.62612	-0.63877	-0.0003544	-3.346	-0.0018564	-3.9848	-0.0022108	554.8185918617474	61.579	0.72697	58.819	58.361	59.088	-2.7593	-0.098663	0.00037534	NaN	58.782	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12744			2595	5549	1900	1909							0.0766157692582965
ARRPAVQTIVG	11	Unmodified	_ARRPAVQTIVG_					0	0	0			REV__ENST00000264033.5_1_11:119170530-119170590:+|nuORF	REV__ENST00000264033.5_1_11:119170530-119170590:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	584.3325805664062	2	584.351471	1166.68839	-0.85388	-0.00049897	-1.4535	-0.00084935	-2.3074	-0.0013483	584.3509306435083	21.206	0.14503	19.868	19.77	19.915	-1.3386					4	2	2	0	0	0	0.025638	1	144	144		17.468	0	1	6492.6	+		2596	24011	1901	1910	3720	3720					0.11171303274159072
ARRPGRGSRRV	11	Unmodified	_ARRPGRGSRRV_					0	0	0			REV__chr18:514755-515095|111|14.05|0.25|5.8|-|2|LINC01925,LINC01925|1	REV__chr18:514755-515095|111|14.05|0.25|5.8|-|2|LINC01925,LINC01925|1	MULTI-MSMS	OvCa9_classI_Rep2	2	634.3724975585938	2	634.38196	1266.74937	-5.7659	-0.0036578	-0.36978	-0.00023458	-6.1357	-0.0038923	634.3814892688545	163.56	1.4089	163.33	162.75	164.16	-0.22696					114	47	3	0	0	0	0.72505	1	16719	16719		14.865	0.72775	1	320930	+		2597	15957	1902	1911	3721	3721					0.12666253096972468
ARRPHLQREP	10	Unmodified	_ARRPHLQREP_					0	0	0			REV__chr4:1022475-1023817|144|11.21|0.1|6.76|+|1|FGFRL1,FGFRL1|1	REV__chr4:1022475-1023817|144|11.21|0.1|6.76|+|1|FGFRL1,FGFRL1|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	420.5841064453125	3	420.574172	1258.70069	-1.2386	-0.00052094	-2.5193	-0.0010595	-3.7579	-0.0015805	420.57337041735843	87.35	0.25238	84.723	84.649	84.901	-2.6269					5	4	2	0	0	0	0.027165	1	7425	7425		20.03	0	1	6443	+		2598	16049	1903	1912	3722	3722					0.08168339737221686
ARRPPKAP	8	Unmodified	_ARRPPKAP_					0	0	0			REV__ENST00000605573.1_1_3:187871449-187871548:-|nuORF	REV__ENST00000605573.1_1_3:187871449-187871548:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	446.2329406738281	2	446.777411	891.540269	0.5049	0.00022558	-1.5422	-0.00068902	-1.0373	-0.00046345	446.7767025313673	61.129	0.39925	57.699	57.444	57.844	-3.43					10	7	2	0	0	0	0.028476	1	4171	4171		20.482	5.8177	1	10126	+		2599	28066	1904	1913	3723	3723					0.09016036810976402
ARRPPKAP	8	Unmodified	_ARRPPKAP_					0	0	0			REV__ENST00000605573.1_1_3:187871449-187871548:-|nuORF	REV__ENST00000605573.1_1_3:187871449-187871548:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	446.777411	891.540269	1.4872	0.00066446	-1.1435	-0.0005109	0.34371	0.00015356	446.7764243221569	60.35	0.47417	57.58	57.238	57.712	-2.7702	-0.059408	0.00014298	NaN	8.2313	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15009	+		2600	28066	1904	1913							0.09016036810976402
ARRPQKPQ	8	Unmodified	_ARRPQKPQ_					0	0	0			REV__ENST00000482974.1_1_3:50617415-50617661:+|nuORF	REV__ENST00000482974.1_1_3:50617415-50617661:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	490.2765808105469	2	490.79105	979.567546	-1.3135	-0.00064467	-2.0848	-0.0010232	-3.3984	-0.0016679	490.78976621827303	85.218	0.14816	83.727	83.604	83.752	-1.4906					4	2	2	0	0	0	0.028476	1	7354	7354		19.36	0	1	8174.3	+		2601	25940	1905	1914	3724	3724					0.07694520351367373
ARRPRPDE	8	Unmodified	_ARRPRPDE_					0	0	0		ENST00000450689.6_1_7:86594326-86688941:-|nuORF	ENST00000450689.6_1_7:86594326-86688941:-|nuORF	ENST00000450689.6_1_7:86594326-86688941:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.9505920410156	2	498.770314	995.526075	3.3371	0.0016644	1.2388	0.00061786	4.5758	0.0022823	498.77078973599345	88.489	0.71056	88.489	88.212	88.922	0					45	16	4	0	0	0	0.028476	1	9461	9461		8.2313	0	1	3422400			2602	12041	1906	1915	3725	3725					0.028133395920349358
ARRRGGGE	8	Unmodified	_ARRRGGGE_					0	0	0		ENST00000381401.10_1_X:1510980-1511175:-|nuORF	ENST00000381401.10_1_X:1510980-1511175:-|nuORF	ENST00000381401.10_1_X:1510980-1511175:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	430.2179260253906	2	429.736274	857.457996	-1.1574	-0.00049736	-3.1218	-0.0013416	-4.2792	-0.0018389	429.7352344371054	43.862	0.47257	43.862	43.608	44.08	0					14	10	2	0	0	0	0.028476	1	2935	2935		18.324	15.395	1	57516			2603	11165	1907	1916	3726	3726					0.023565147320482538
ARRRPPRNK	9	Unmodified	_ARRRPPRNK_					0	0	0			REV__ENSG00000180535|ENST00000609256|BHLHA15	REV__ENSG00000180535|ENST00000609256|BHLHA15	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8567504882812	2	575.855047	1149.69554	-1.1823	-0.00068082	3.4192	0.001969	2.2369	0.0012882	575.8568828168627	70.685	1.3599	67.204	66.885	68.245	-3.4812					71	27	4	0	0	0	0.55588	1	5357	5357		37.159	2.9866	1	576660	+		2604	22180	1908	1917	3727	3727					0.12668080665253
ARRRPPRNK	9	Unmodified	_ARRRPPRNK_					0	0	0			REV__ENSG00000180535|ENST00000609256|BHLHA15	REV__ENSG00000180535|ENST00000609256|BHLHA15	MULTI-MATCH	OvCa9_classI_Rep2	2		2	575.855047	1149.69554	-1.102	-0.00063459	3.1057	0.0017884	2.0037	0.0011538	575.8567317534588	69.51	1.3988	66.89	66.615	68.014	-2.6203	-0.072134	0.00059448	NaN	37.159	74	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	522480	+		2605	22180	1908	1917							0.12668080665253
ARRRPPRNK	9	Unmodified	_ARRRPPRNK_					0	0	0			REV__ENSG00000180535|ENST00000609256|BHLHA15	REV__ENSG00000180535|ENST00000609256|BHLHA15	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	575.855047	1149.69554	-1.1823	-0.00068082	3.4192	0.001969	2.2369	0.0012882	575.8568828168627	70.685	1.3599	67.204	66.885	68.245	-3.4812	0.24221	0.00095554	NaN	37.159	71	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	576660	+		2606	22180	1908	1917							0.12668080665253
ARRRPPSVAQ	10	Unmodified	_ARRRPPSVAQ_					0	0	0		ENST00000281456.10_1_4:186064403-186064505:+|nuORF	ENST00000281456.10_1_4:186064403-186064505:+|nuORF	ENST00000281456.10_1_4:186064403-186064505:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	569.3377075195312	2	569.333613	1136.65267	3.2112	0.0018282	2.8529	0.0016242	6.0641	0.0034525	569.334949049749	135.06	0.84099	133.51	133.26	134.1	-1.5437					40	16	4	0	0	0	0.6349	1	13069	13069		37.812	0	1	54156			2607	10048	1909	1918	3728	3728					0.08981265817169515
ARRRPVTP	8	Unmodified	_ARRRPVTP_					0	0	0			REV__ENST00000497343.5_1_3:160473400-160474084:+|nuORF	REV__ENST00000497343.5_1_3:160473400-160474084:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	476.7947082519531	2	476.793592	951.572632	-0.041831	-1.9945E-05	2.5531	0.0012173	2.5113	0.0011974	476.7946913581807	110.41	1.5792	110.23	109.96	111.54	-0.17237					69	31	3	0	0	0	0.74229	1	10414	10414		30.504	1.3541	1	711390	+		2608	26775	1910	1919	3729	3729					0.09490824213980886
ARRRVITN	8	Unmodified	_ARRRVITN_					0	0	0			REV__ENSG00000120875|ENST00000240100|DUSP4	REV__ENSG00000120875|ENST00000240100|DUSP4	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.7867431640625	2	493.304324	984.594095	2.4276	0.0011975	1.6061	0.00079229	4.0336	0.0019898	493.3049472109103	75.181	0.36357	75.181	75.005	75.369	0					12	8	2	0	0	0	0.028476	1	7453	7453		7.6903	0	1	212350	+		2609	18518	1911	1920	3730	3730					0.10118209242693865
ARRRVITN	8	Unmodified	_ARRRVITN_					0	0	0			REV__ENSG00000120875|ENST00000240100|DUSP4	REV__ENSG00000120875|ENST00000240100|DUSP4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	493.304324	984.594095	-1.0894	-0.00053741	-4.0065	-0.0019764	-5.0959	-0.0025139	493.3025204628251	77.581	0.45437	75.228	74.995	75.449	-2.3527	0.023523	-0.0034979	NaN	7.6903	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8057.8	+		2610	18518	1911	1920							0.10118209242693865
ARRTAGDHVV	10	Unmodified	_ARRTAGDHVV_					0	0	0		CAMTA1|p.V1621Gfs*12|1|0.03|ENSG00000171735|chr1:7751370-7751371|-/GGGACCACGTGGTTATTCAGCTGGAGTGGGTT|frameshift_variant	CAMTA1|p.V1621Gfs*12|1|0.03|ENSG00000171735|chr1:7751370-7751371|-/GGGACCACGTGGTTATTCAGCTGGAGTGGGTT|frameshift_variant	CAMTA1|p.V1621Gfs*12|1|0.03|ENSG00000171735|chr1:7751370-7751371|-/GGGACCACGTGGTTATTCAGCTGGAGTGGGTT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.2959594726562	2	541.296696	1080.57884	-0.76185	-0.00041239	0.53739	0.00029089	-0.22445	-0.0001215	541.2968743073858	22.043	1.337	20.704	20.473	21.81	-1.3386					67	32	3	0	0	0	0.66721	1	248	248		34.173	0	1	333050			2611	182	1912	1921	3731	3731					0.04177297654837275
ARRTGTPSDP	10	Unmodified	_ARRTGTPSDP_					0	0	0		CTNND1|p.L417Sfs*11|1|0.14|ENSG00000198561|chr11:57802025-57802026|-/CAATGGCTTATTTGGAGAGCTCCACACAA|frameshift_variant;nc|ENSG00000198561|O60716-7|CTNND1;TMX2-CTNND1|11|fusion;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;TMX2-CTNND1|12|fusion;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;ENSG00000198561|ENST00000399050|CTNND1;RTN4RL2-CTNND1|8|fusion;RTN4RL2-CTNND1|9|fusion;RTN4RL2-CTNND1|10|fusion;RTN4RL2-CTNND1|3|fusion;RTN4RL2-CTNND1|6|fusion;nc|ENSG00000198561|O60716-5|CTNND1;RTN4RL2-CTNND1|4|fusion;RTN4RL2-CTNND1|7|fusion;RTN4RL2-CTNND1|1|fusion;RTN4RL2-CTNND1|2|fusion;TMX2-CTNND1|8|fusion;TMX2-CTNND1|9|fusion;TMX2-CTNND1|10|fusion;TMX2-CTNND1|6|fusion;TMX2-CTNND1|7|fusion;TMX2-CTNND1|3|fusion;TMX2-CTNND1|4|fusion;TMX2-CTNND1|5|fusion;TMX2-CTNND1|1|fusion;RTN4RL2-CTNND1|5|fusion;TMX2-CTNND1|15|fusion;nc|ENSG00000198561|O60716-20|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;CTNND1|p.K408Nfs*21|1|0.04|ENSG00000198561|chr11:57801999-57802000|-/TAGTGTGACAGACTCACCCTCTAGTGGTTGTT|frameshift_variant;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;TMX2-CTNND1|14|fusion;nc|ENSG00000198561|O60716-8|CTNND1;TMX2-CTNND1|2|fusion;TMX2-CTNND1|13|fusion;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1	CTNND1|p.L417Sfs*11|1|0.14|ENSG00000198561|chr11:57802025-57802026|-/CAATGGCTTATTTGGAGAGCTCCACACAA|frameshift_variant	CTNND1|p.L417Sfs*11|1|0.14|ENSG00000198561|chr11:57802025-57802026|-/CAATGGCTTATTTGGAGAGCTCCACACAA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2643432617188	2	529.272887	1056.53122	1.1861	0.00062778	1.2327	0.00065243	2.4188	0.0012802	529.2733395559802	138.71	0.77002	138.71	138.45	139.22	0					32	15	3	0	0	0	0.026956	1	16224	16224		19.997	0	1	230900			2612	695	1913	1922	3732	3732					0.0052159866399961174
ARRTVPSI	8	Unmodified	_ARRTVPSI_					0	0	0		ENSG00000119778|ENST00000238789|ATAD2B;nc|ENSG00000119778|Q9ULI0-2|ATAD2B	ENSG00000119778|ENST00000238789|ATAD2B	ENSG00000119778|ENST00000238789|ATAD2B	MULTI-MSMS	OvCa9_classI_Rep3	3	450.2746276855469	2	450.274701	898.534849	-3.7498	-0.0016884	3.5683	0.0016067	-0.18149	-8.172E-05	450.27623858459356	147.83	1.7988	146.88	146.5	148.3	-0.95119					100	35	5	0	0	0	0.75241	1	12456	12456		25.45	2.4077	1	751980			2613	3395	1914	1923	3733	3733					0.08152313228504227
ARRVRHQYRQW	11	Unmodified	_ARRVRHQYRQW_					0	0	0			REV__ENSG00000166856|ENST00000300098|GPR182	REV__ENSG00000166856|ENST00000300098|GPR182	MULTI-MSMS	OvCa9_classI_Rep3	3	519.2846069335938	3	519.287025	1554.83924	-0.97435	-0.00050597	-2.5825	-0.0013411	-3.5569	-0.001847	519.2856367243071	92.405	2.1918	90.38	90.089	92.281	-2.0241					115	44	5	0	0	0	0.72516	1	5882	5882		13.508	0	1	2226400	+		2614	21227	1915	1924	3734	3734					0.0840188270553881
ARSKPKLVS	9	Unmodified	_ARSKPKLVS_					0	0	0		nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD	nc|ENSG00000153707|P23468-2|PTPRD	nc|ENSG00000153707|P23468-2|PTPRD	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.55865478515625	2	493.311284	984.608014	-0.78209	-0.00038582	0.64019	0.00031581	-0.14191	-7.0005E-05	493.31147386393263	37.829	0.31499	37.829	37.668	37.983	0					11	6	3	0	0	0	0.027455	1	2111	2111		34.173	7.4796	1	103160			2615	5688	1916	1925	3735	3735					0.11509441951125154
ARSLGDLPEG	10	Unmodified	_ARSLGDLPEG_					0	0	0		nc|ENSG00000181085|Q8TD08-2|MAPK15;nc|ENSG00000181085|Q8TD08-3|MAPK15;ENSG00000181085|ENST00000338033|MAPK15	nc|ENSG00000181085|Q8TD08-2|MAPK15	nc|ENSG00000181085|Q8TD08-2|MAPK15	MULTI-MSMS	OvCa9_classI_Rep3	3	507.766845703125	2	507.764363	1013.51417	-0.36325	-0.00018445	4.3065	0.0021867	3.9433	0.0020023	507.76638761877894	131.88	1.6751	130.75	129.96	131.63	-1.1249					88	33	4	0	0	0	0.59703	1	10505	10505		42.396	3.1433	1	127470			2616	7918	1917	1926	3736	3736					0.007956780581821477
ARSLGNKTHG	10	Unmodified	_ARSLGNKTHG_					0	0	0		ENST00000237596.6_1_4:88929448-88940649:+|nuORF	ENST00000237596.6_1_4:88929448-88940649:+|nuORF	ENST00000237596.6_1_4:88929448-88940649:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.7831420898438	2	520.783422	1039.55229	-0.5658	-0.00029466	0.48396	0.00025204	-0.081833	-4.2617E-05	520.7835306611641	20.373	0.97506	19.035	18.762	19.737	-1.3386					36	19	3	0	0	0	0.6349	1	35	35		37.812	0.65241	1	135960			2617	9742	1918	1927	3737	3737					0.03409608763513461
ARSLVPVR	8	Unmodified	_ARSLVPVR_					0	0	0			REV__ENST00000471223.1_1_1:3549956-3550340:-|nuORF	REV__ENST00000471223.1_1_1:3549956-3550340:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	449.28656005859375	2	449.285069	896.555585	0.51923	0.00023328	-0.66322	-0.00029797	-0.14399	-6.4692E-05	449.28464317738195	52.895	1.1643	52.895	52.61	53.774	0					60	26	4	0	0	0	0.66057	1	4180	4180		51.335	5.3835	1	6346400	+		2618	26274	1919	1928	3738	3738					0.10316903608179473
ARSPARISP	9	Unmodified	_ARSPARISP_					0	0	0		ENSG00000032219|ENST00000355431|ARID4A	ENSG00000032219|ENST00000355431|ARID4A	ENSG00000032219|ENST00000355431|ARID4A	MULTI-MSMS	OvCa9_classI_Rep2	2	477.7771301269531	2	477.777608	953.540663	0.30924	0.00014775	-0.9987	-0.00047716	-0.68946	-0.00032941	477.7771636832581	43.542	2.3879	40.832	40.509	42.897	-2.7097					104	47	3	0	0	0	0.50149	2	2458	2458;2491		42.396	5.237	1	3363800			2619	1069	1920	1929	3739;3740	3739					0.0620341174017085
ARSPARISP	9	Unmodified	_ARSPARISP_					0	0	0		ENSG00000032219|ENST00000355431|ARID4A	ENSG00000032219|ENST00000355431|ARID4A	ENSG00000032219|ENST00000355431|ARID4A	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.7779541015625	2	477.777608	953.540663	-0.82611	-0.0003947	0.0037772	1.8047E-06	-0.82233	-0.00039289	477.7776089014007	43.823	3.0314	40.816	40.483	43.515	-3.0074					146	58	4	0	0	0	0.40818	1	2162	2162		51.193	5.2204	1	12741000			2620	1069	1920	1929	3741	3741					0.0620341174017085
ARSPQLTAGV	10	Unmodified	_ARSPQLTAGV_					0	0	0			REV__ENST00000290231.10_1_20:44692028-44693736:-|nuORF	REV__ENST00000290231.10_1_20:44692028-44693736:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.2778625488281	2	500.282723	998.550893	-1.2465	-0.0006236	0.42666	0.00021345	-0.81982	-0.00041014	500.2824905285062	41.497	0.88485	38.516	38.179	39.064	-2.9804					21	16	2	0	0	0	0.026752	1	1865	1865		44.117	23.635	1	25175	+		2621	24150	1921	1930	3742	3742					0.05155974674744357
ARSRKLWI	8	Unmodified	_ARSRKLWI_					0	0	0		ENSG00000146197|ENST00000274938|SCUBE3;nc|ENSG00000146197|Q8IX30-2|SCUBE3	ENSG00000146197|ENST00000274938|SCUBE3	ENSG00000146197|ENST00000274938|SCUBE3	MULTI-SECPEP	OvCa9_classI_Rep2	2	514.7930908203125	2	515.319443	1028.62433	-1.17	-0.00060293	-0.2181	-0.00011239	-1.3881	-0.00071532	515.3189630513582	117.95	0.2486	117.8	117.69	117.94	-0.14755					6	4	2	0	0	0	0.028476	1	11311	11311		27.882	0	1	3564.3			2622	5271	1922	1931	3743	3743					0.11116567907879471
ARSRPPDRL	9	Unmodified	_ARSRPPDRL_					0	0	0		ENST00000370114.7_1_1:101361304-101361547:-|nuORF	ENST00000370114.7_1_1:101361304-101361547:-|nuORF	ENST00000370114.7_1_1:101361304-101361547:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.8152465820312	2	534.307064	1066.59957	-1.0651	-0.00056907	-3.9947	-0.0021344	-5.0598	-0.0027035	534.3047503841178	74.863	1.1114	71.632	71.24	72.351	-3.2308					24	11	3	0	0	0	0.027462	1	5950	5950		44.117	0	1	151940			2623	10920	1923	1932	3744	3744					0.06893888034505835
ARSSLNSSL	9	Unmodified	_ARSSLNSSL_					0	0	0		ENSG00000253117|ENST00000254627|OC90;nc|ENSG00000253117|Q02509-3|OC90	ENSG00000253117|ENST00000254627|OC90	ENSG00000253117|ENST00000254627|OC90	MULTI-MSMS	OvCa99_classI_Rep5	1	467.7529602050781	2	467.751256	933.487959	-0.21417	-0.00010018	4.367	0.0020427	4.1529	0.0019425	467.7531249565419	29.756	0.59992	29.756	29.436	30.036	0					24	11	4	0	0	0	0.55011	1	1099	1099		37.812	2.1932	1	197430			2624	9424	1924	1933	3745	3745					0.018554088867063
ARSVRRQHKT	10	Unmodified	_ARSVRRQHKT_					0	0	0		ENSG00000124143|ENST00000373345|ARHGAP40	ENSG00000124143|ENST00000373345|ARHGAP40	ENSG00000124143|ENST00000373345|ARHGAP40	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.70391845703125	3	413.577805	1237.71158	0.54767	0.0002265	1.646	0.00068073	2.1936	0.00090724	413.5783924435557	33.459	0.24752	33.459	33.285	33.533	0					6	4	2	0	0	0	0.026717	1	1519	1519		34.087	0	1	19359			2625	3626	1925	1934	3746	3746					0.10223742111497813
ARTCAELTLT	10	Unmodified	_ARTCAELTLT_					0	0	0			REV__ENSG00000042781|ENST00000307340|USH2A	REV__ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.8225708007812	2	539.781699	1077.54884	0.29045	0.00015678	-3.1871	-0.0017203	-2.8966	-0.0015635	540.2816043744298	72.795	0.5036	72.795	72.45	72.954	0					22	12	3	0	0	0	0.026994	1	7097	7097		40.778	29.267	1	366920	+		2626	16642	1926	1935	3747	3747					0.013171778746254859
ARTEELPSP	9	Unmodified	_ARTEELPSP_					0	0	0			REV__nc|ENSG00000143570|Q9NY26-2|SLC39A1	REV__nc|ENSG00000143570|Q9NY26-2|SLC39A1	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.7940979003906	2	500.258914	998.503274	-1.3824	-0.00069154	1.1284	0.00056447	-0.25401	-0.00012707	500.25926083984217	86.004	0.55092	83.783	83.586	84.137	-2.2204					15	10	2	0	0	0	0.027462	1	5095	5095		20.947	0.4651	1	37607	+		2627	19854	1927	1936	3748	3748					0.003962756839086978
ARTESSPWGLP	11	Unmodified	_ARTESSPWGLP_					0	0	0			REV__ENSG00000150527|ENST00000640607|MIA2	REV__ENSG00000150527|ENST00000640607|MIA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	601.3340454101562	2	600.80402	1199.59349	1.873	0.0011253	4.2447	0.0025502	6.1177	0.0036755	600.8059358426129	126.8	2.1904	126.8	125.85	128.04	0					178	47	7	0	0	0	0.025297	1	14624	14624		43.651	27.178	1	7295500	+		2628	20192	1928	1937	3749	3749					0.0016732501235310338
ARTFLFWRLRR	11	Unmodified	_ARTFLFWRLRR_					0	0	0		ACACB|p.Y2327F|1|0.06|ENSG00000076555|chr12:109265147-109265147|A/T|missense_variant	ACACB|p.Y2327F|1|0.06|ENSG00000076555|chr12:109265147-109265147|A/T|missense_variant	ACACB|p.Y2327F|1|0.06|ENSG00000076555|chr12:109265147-109265147|A/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7965393066406	3	507.968633	1520.88407	-0.31782	-0.00016144	1.9559	0.00099353	1.6381	0.00083209	507.96965768838425	23.774	0.48978	23.774	23.547	24.036	0					27	9	4	0	0	0	0.026431	1	391	391		11.455	5.1337	1	299220			2629	16	1929	1938	3750	3750					0.1444631351885164
ARTPSGPHI	9	Unmodified	_ARTPSGPHI_					0	0	0			REV__ENSG00000166260|ENST00000299335|COX11	REV__ENSG00000166260|ENST00000299335|COX11	MSMS	OvCa99_classI_Rep5	1	468.2572021484375	2	468.256508	934.498464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.419	1	46.419	45.919	46.919	0								0	0	0	0.1756	1	3277	3277		40.778	1.972	1		+		2630	21170	1930	1939	3751	3751					0.0285943633180068
ARTPWIGSRGQ	11	Unmodified	_ARTPWIGSRGQ_					0	0	0			REV__ENST00000440082.5_1_7:30544246-30544390:-|nuORF	REV__ENST00000440082.5_1_7:30544246-30544390:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	614.2971801757812	2	614.830903	1227.64725	0.99368	0.00061094	3.5861	0.0022049	4.5798	0.0028158	614.8320225478207	139.78	1.044	139.78	138.98	140.02	0					31	21	2	0	0	0	0.02523	1	16241	16241		38.754	0	1	47699	+		2631	25829	1931	1940	3752	3752					0.04253542234710039
ARTQPILRRT	10	Unmodified	_ARTQPILRRT_					0	0	0		ENST00000471877.5_1_7:149576281-149576879:+|nuORF	ENST00000471877.5_1_7:149576281-149576879:+|nuORF	ENST00000471877.5_1_7:149576281-149576879:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	606.36865234375	2	606.370195	1210.72584	-3.14	-0.001904	2.1543	0.0013063	-0.98567	-0.00059768	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.762	1	14866	14866		23.523	1.8369	1	257720			2632	12389	1932	1941	3753	3753					0.12890394539795125
ARTRCPGRQRG	11	Unmodified	_ARTRCPGRQRG_					0	0	0			REV__ENST00000506216.5_1_4:5749932-5890196:-|nuORF	REV__ENST00000506216.5_1_4:5749932-5890196:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	420.2411193847656	3	419.895028	1256.66325	-0.089244	-3.7473E-05	-2.4321	-0.0010212	-2.5213	-0.0010587	420.2281839821798	55.675	0.45205	55.675	55.48	55.932	0					15	10	2	0	0	0	0.025818	1	4600	4600		36.318	13.756	1	138560	+		2633	26885	1933	1942	3754	3754					0.04518925199954538
ARTTDTRTTMS	11	Unmodified	_ARTTDTRTTMS_					0	0	0		ENST00000478189.1_1_6:33049883-33051411:+|nuORF	ENST00000478189.1_1_6:33049883-33051411:+|nuORF	ENST00000478189.1_1_6:33049883-33051411:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	620.3286743164062	2	620.801151	1239.58775	0.72687	0.00045124	2.3845	0.0014803	3.1113	0.0019315	620.8021720277055	83.356	0.34062	83.356	83.204	83.545	0					13	7	2	0	0	0	0.025528	1	8648	8648		42.864	11.334	1	262280			2634	12489	1934	1943	3755	3755					-0.0224614156163625
ARVALAPL	8	Unmodified	_ARVALAPL_					0	0	0		ENST00000469140.2_1_14:105933129-105933369:+|nuORF	ENST00000469140.2_1_14:105933129-105933369:+|nuORF	ENST00000469140.2_1_14:105933129-105933369:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	406.71978759765625	2	405.763438	809.512323	2.9468	0.0011957	-0.61797	-0.00025075	2.3289	0.00094497	405.7630928387538	111.06	0.57594	111.06	110.8	111.38	0					17	12	2	0	0	0	0.028476	1	12617	12617		28.254	0	1	158320			2635	12341	1935	1944	3756	3756					0.09994713830872115
ARVDVEFT	8	Unmodified	_ARVDVEFT_					0	0	0			REV__tr|A0A553SHB3|A0A553SHB3_NIACILargeribosomalsubunitproteinuL23OS=NialliacirculansOX=1397GN=rplWPE=3SV=1	REV__tr|A0A553SHB3|A0A553SHB3_NIACILargeribosomalsubunitproteinuL23OS=NialliacirculansOX=1397GN=rplWPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	468.7430114746094	2	468.742899	935.471246	2.048	0.00095999	0.30287	0.00014197	2.3509	0.001102	468.7428291880413	122.36	0.68665	122.36	122.08	122.77	0					24	14	2	0	0	0	0.66704	1	14085	14085		50.025	2.3672	1	276900	+		2636	29787	1936	1945	3757	3757					0.0009290800077224048
ARVEFPVAL	9	Unmodified	_ARVEFPVAL_					0	0	0		nc|ENSG00000183648|O75438-2|NDUFB1	nc|ENSG00000183648|O75438-2|NDUFB1	nc|ENSG00000183648|O75438-2|NDUFB1	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2900695800781	2	501.292559	1000.57057	-1.4695	-0.00073667	-2.6975	-0.0013522	-4.167	-0.0020889	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.69403	1	11235	11235		19.997	0.89325	1	97838			2637	15212	1937	1946	3758	3758					0.07030350685522535
ARVETANKL	9	Unmodified	_ARVETANKL_					0	0	0		tr|A0A553SG04|A0A553SG04_NIACIResponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_09860PE=4SV=1	tr|A0A553SG04|A0A553SG04_NIACIResponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_09860PE=4SV=1	tr|A0A553SG04|A0A553SG04_NIACIResponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_09860PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.2906799316406	2	501.290548	1000.56654	1.3674	0.00068548	-1.5595	-0.00078175	-0.19204	-9.6267E-05	501.2895121117765	137.98	2.3901	136.45	135.78	138.17	-1.5284					99	50	3	0	0	0	0.66262	1	13463	13463		24.519	1.4767	1	64432			2638	33101	1938	1947	3759	3759					0.06628261191792717
ARVFIEELL	9	Unmodified	_ARVFIEELL_					0	0	0		tr|A0A7D7A2G0|A0A7D7A2G0_9CLOT[ribosomalproteinuS5]-alanineN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19745PE=3SV=1	tr|A0A7D7A2G0|A0A7D7A2G0_9CLOT[ribosomalproteinuS5]-alanineN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19745PE=3SV=1	tr|A0A7D7A2G0|A0A7D7A2G0_9CLOT[ribosomalproteinuS5]-alanineN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19745PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3170776367188	2	545.318774	1088.623	-2.8527	-0.0015556	-0.96726	-0.00052747	-3.8199	-0.0020831	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.62352	1	11759	11759		29.15	4.6304	1	337600			2639	36075	1939	1948	3760	3760					0.08222889028479585
ARVFRSIPP	9	Unmodified	_ARVFRSIPP_					0	0	0		nc|ENSG00000179115|Q9Y285-2|FARSA;ENSG00000179115|ENST00000314606|FARSA;ENST00000586280.1_1_19:13041410-13044450:-|nuORF;ENST00000592662.5_1_19:13039347-13044510:-|nuORF	nc|ENSG00000179115|Q9Y285-2|FARSA	nc|ENSG00000179115|Q9Y285-2|FARSA	MULTI-MSMS	OvCa9_classI_Rep2	2	521.8123779296875	2	521.811451	1041.60835	-0.83564	-0.00043605	3.6163	0.001887	2.7806	0.001451	521.8134554363941	67.923	3.082	65.262	64.842	67.924	-2.661					124	61	3	0	0	0	0.63422	1	5385	5385		27.882	2.4321	1	4500900			2640	7803	1940	1949	3761	3761					0.08920861671003877
ARVFRSIPP	9	Unmodified	_ARVFRSIPP_					0	0	0		nc|ENSG00000179115|Q9Y285-2|FARSA;ENSG00000179115|ENST00000314606|FARSA;ENST00000586280.1_1_19:13041410-13044450:-|nuORF;ENST00000592662.5_1_19:13039347-13044510:-|nuORF	nc|ENSG00000179115|Q9Y285-2|FARSA	nc|ENSG00000179115|Q9Y285-2|FARSA	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.814208984375	2	521.811451	1041.60835	-0.59233	-0.00030908	3.2047	0.0016722	2.6123	0.0013631	521.8131591315095	68.904	2.2928	65.414	65.113	67.406	-3.4902					139	46	6	0	0	0	0.63422	1	5137	5137		27.882	0	1	4748000			2641	7803	1940	1949	3762	3762					0.08920861671003877
ARVHDNCPEV	10	Carbamidomethyl (C)	_ARVHDNC(Carbamidomethyl (C))PEV_	ARVHDNC(1)PEV		ARVHDNC(82)PEV		0	1	0			REV__ENSG00000103253|ENST00000389703|HAGHL	REV__ENSG00000103253|ENST00000389703|HAGHL	MULTI-MSMS	OvCa99_classI_Rep5	1	598.77734375	2	598.777479	1195.5404	2.144	0.0012838	-3.0143	-0.0018049	-0.87032	-0.00052113	598.7755467186332	120.21	1.9232	120.21	119.88	121.8	0					85	44	3	0	0	0	0.28845	1	13798	13798		82.241	13.454	1	7559500	+		2642	17608	1941	1950	3763	3763	195				-0.049543760420192484
ARVIKSRIP	9	Unmodified	_ARVIKSRIP_					0	0	0			REV__nc|ENSG00000088992|Q96BS2-2|TESC	REV__nc|ENSG00000088992|Q96BS2-2|TESC	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3387451171875	2	520.340375	1038.6662	0.80842	0.00042065	-1.1686	-0.00060808	-0.36019	-0.00018742	520.3396330477779	43.438	1.3914	40.728	40.41	41.802	-2.7097					71	27	4	0	0	0	0.55588	1	2418	2418		37.159	0	1	349050	+		2643	17191	1942	1951	3764	3764					0.14841123596397665
ARVLAWLL	8	Unmodified	_ARVLAWLL_					0	0	0			REV__ENSG00000139269|ENST00000266646|INHBE	REV__ENSG00000139269|ENST00000266646|INHBE	MULTI-SECPEP	OvCa9_classI_Rep2	2	471.7484130859375	2	471.300188	940.585822	-0.80227	-0.00037811	0.69579	0.00032793	-0.10648	-5.0182E-05	471.3003514879118	115.88	0.99055	115.76	115.49	116.48	-0.11777					29	19	2	0	0	0	0.028476	1	11106	11106		26.796	0	1	29258	+		2644	19600	1943	1952	3765	3765					0.11315262273365079
ARVLLEQARR	10	Unmodified	_ARVLLEQARR_					0	0	0		nc|ENSG00000115504|Q8NDI1|EHBP1;ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1;ENST00000469591.1_1_2:63169876-63182810:+|nuORF	nc|ENSG00000115504|Q8NDI1|EHBP1	nc|ENSG00000115504|Q8NDI1|EHBP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3697509765625	2	606.370195	1210.72584	-0.26856	-0.00016285	-0.5906	-0.00035812	-0.85916	-0.00052097	606.369699493104	145.24	3.8933	143.8	141.64	145.53	-1.4357					226	74	4	0	0	0	0.73378	1	14389	14389		26.693	5.746	1	336140			2645	14976	1944	1953	3766	3766					0.12890394539772387
ARVLLQARER	10	Unmodified	_ARVLLQARER_					0	0	0			REV__ENST00000482878.5_1_16:772872-773550:-|nuORF	REV__ENST00000482878.5_1_16:772872-773550:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3701171875	2	606.370195	1210.72584	-1.3399	-0.00081245	0.36309	0.00022017	-0.97677	-0.00059228	606.3703052098949	148.27	2.4393	146.84	145.43	147.87	-1.4351					149	49	5	0	0	0	0.80581	1	14684	14684		18.262	4.808	1	591330	+		2646	20717	1945	1954	3767	3767					0.12890394539772387
ARVLSMPITI	10	Oxidation (M)	_ARVLSM(Oxidation (M))PITI_		ARVLSM(1)PITI		ARVLSM(46)PITI	0	0	1			REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL	REV__nc|ENSG00000124232|Q9UBG7-2|RBPJL	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.824462890625	2	558.825909	1115.63727	-0.73073	-0.00040835	-2.4892	-0.001391	-3.22	-0.0017994	558.8244242973437	125.01	2.7525	123.61	123.23	125.98	-1.3908					97	54	3	0	0	0	0.5675	1	11890	11890		45.972	13.16	1	171930	+		2647	18677	1946	1955	3768	3768		432			0.08407218185107013
ARVPQNRRPWR	11	Unmodified	_ARVPQNRRPWR_					0	0	0		ENST00000592934.1_1_19:1748219-1748741:+|nuORF	ENST00000592934.1_1_19:1748219-1748741:+|nuORF	ENST00000592934.1_1_19:1748219-1748741:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.3058776855469	3	479.276237	1434.80688	-0.3551	-0.00017019	-0.45051	-0.00021592	-0.80561	-0.00038611	479.27601907329887	48.306	0.29691	48.306	48.204	48.501	0					13	6	3	0	0	0	0.026145	1	3544	3544		12.957	0	1	160220			2648	14144	1947	1956	3769	3769					0.10687095302546368
ARVPYTHSQ	9	Unmodified	_ARVPYTHSQ_					0	0	0		nc|ENSG00000181631|Q9BPV8-2|P2RY13;ENSG00000181631|ENST00000325602|P2RY13	nc|ENSG00000181631|Q9BPV8-2|P2RY13	nc|ENSG00000181631|Q9BPV8-2|P2RY13	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.27001953125	2	529.772522	1057.53049	1.6448	0.00087139	-2.7771	-0.0014713	-1.1323	-0.00059987	529.7709940812273	110.15	0.4074	110.15	109.86	110.27	0					16	8	2	0	0	0	0.027448	1	12503	12503		35.618	0	1	960820			2649	7941	1948	1957	3770	3770					0.004028040149478329
ARVQRGARR	9	Unmodified	_ARVQRGARR_					0	0	0			REV__ENST00000455997.5_1_3:45730878-45731223:+|nuORF	REV__ENST00000455997.5_1_3:45730878-45731223:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.3543090820312	2	535.326122	1068.63769	0.74094	0.00039665	0.95661	0.0005121	1.6976	0.00090874	535.326250104315	140.41	0.61438	140.41	140.17	140.78	0					21	12	3	0	0	0	0.027462	1	16422	16422		35.618	16.515	1	19639	+		2650	26024	1949	1958	3771	3771					0.10611818739835144
ARVREERLLV	10	Unmodified	_ARVREERLLV_					0	0	0			REV__ENST00000298292.12_1_14:50100267-50100483:-|nuORF	REV__ENST00000298292.12_1_14:50100267-50100483:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.2152404785156	3	414.254328	1239.74115	0.71822	0.00029753	-0.54716	-0.00022666	0.17106	7.0862E-05	414.2538808114991	58.468	0.37315	58.468	58.322	58.696	0					13	8	2	0	0	0	0.027147	1	4976	4976		6.6596	0	1	147820	+		2651	24214	1950	1959	3772	3772					0.13087261336977463
ARVRLPPLP	9	Unmodified	_ARVRLPPLP_					0	0	0			REV__ENST00000375098.7_1_9:100872213-100881366:-|nuORF	REV__ENST00000375098.7_1_9:100872213-100881366:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	509.8043212890625	2	509.829643	1017.64473	1.7935	0.00091439	4.4366	0.0022619	6.2301	0.0031763	509.83245577264563	112.25	0.24608	111.15	111.04	111.29	-1.1038					6	4	2	0	0	0	0.027462	1	8207	8207		31.955	0	1	13106	+		2652	25079	1951	1960	3773	3773					0.13661738567691373
ARVRPPPS	8	Unmodified	_ARVRPPPS_					0	0	0			REV__chr7:102584338-102587262|114|12.57|0.0|20.26|-|0|TE_info:AluSx1,AluSx1_dup45343,Alu,SINE,donor,+,102587262,102587369|RASA4,None|1	REV__chr7:102584338-102587262|114|12.57|0.0|20.26|-|0|TE_info:AluSx1,AluSx1_dup45343,Alu,SINE,donor,+,102587262,102587369|RASA4,None|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	439.6888427734375	2	440.261594	878.508634	0.8396	0.00036965	-0.74453	-0.00032779	0.095077	4.1859E-05	440.2611564916074	58.905	0.42773	58.905	58.655	59.083	0					23	10	3	0	0	0	0.028476	1	5002	5002		16.473	0	1	677190	+		2653	16088	1952	1961	3774	3774					0.06452044057039075
ARVRPVTG	8	Unmodified	_ARVRPVTG_					0	0	0			REV__ENST00000602806.1_1_1:226271519-226271639:+|nuORF	REV__ENST00000602806.1_1_1:226271519-226271639:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	428.2605895996094	2	428.261594	854.508634	-2.5112	-0.0010754	2.6852	0.00115	0.17402	7.4528E-05	428.26264584865925	144.43	1.5889	143.46	143.1	144.69	-0.97301					79	31	4	0	0	0	0.7549	1	12054	12054		24.203	2.5004	1	839380	+		2654	28046	1953	1962	3775	3775					0.0755604405703707
ARVRPVTG	8	Unmodified	_ARVRPVTG_					0	0	0			REV__ENST00000602806.1_1_1:226271519-226271639:+|nuORF	REV__ENST00000602806.1_1_1:226271519-226271639:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	428.2615966796875	2	428.261594	854.508634	-0.2241	-9.5974E-05	0.26636	0.00011407	0.042257	1.8097E-05	428.2616025856162	144.91	1.2947	143.47	143.1	144.39	-1.4357					70	24	4	0	0	0	0.75426	1	14211	14211		18.324	0.95945	1	398580	+		2655	28046	1953	1962	3776	3776					0.0755604405703707
ARVSILIDV	9	Unmodified	_ARVSILIDV_					0	0	0		ENSG00000175267|ENST00000389398|VWA3A;VWA3A|p.L778Afs*11|2|0.13|ENSG00000175267|chr16:22140185-22140186|-/C|frameshift_variant;VWA3A|p.E437Gfs*20|1|0.11|ENSG00000175267|chr16:22121568-22121569|-/AG|frameshift_variant	ENSG00000175267|ENST00000389398|VWA3A	ENSG00000175267|ENST00000389398|VWA3A	MULTI-MSMS	OvCa99_classI_Rep5	1	493.305419921875	2	493.305667	984.596781	1.6294	0.00080382	-3.4191	-0.0016867	-1.7897	-0.00088286	493.3032576681763	108.8	0.60964	108.8	108.5	109.11	0					20	13	2	0	0	0	0.31747	1	12308	12308		60.972	4.2509	1	570090			2656	7531	1954	1963	3777	3777					0.10386619857013102
ARVTLELPAQP	11	Unmodified	_ARVTLELPAQP_					0	0	0			REV__ENSG00000086570|ENST00000261800|FAT2	REV__ENSG00000086570|ENST00000261800|FAT2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	598.8396606445312	2	597.845687	1193.67682	-0.21575	-0.00012898	2.533	0.0015143	2.3173	0.0013854	597.847340720925	82.12	0.92007	79.437	79.156	80.076	-2.6829					28	18	2	0	0	0	0.025746	1	6812	6812		13.454	0	1	34346	+		2657	17150	1955	1964	3778	3778					0.08773061460169629
ARVTPALGPS	10	Unmodified	_ARVTPALGPS_					0	0	0		ENST00000330883.8_1_7:150652652-150652847:-|nuORF	ENST00000330883.8_1_7:150652652-150652847:-|nuORF	ENST00000330883.8_1_7:150652652-150652847:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.2549133300781	2	484.779816	967.545079	-0.25843	-0.00012528	-1.2192	-0.00059105	-1.4776	-0.00071633	484.77908757950604	62.458	0.97449	59	58.815	59.789	-3.4577					38	19	3	0	0	0	0.026551	1	4376	4376		35.152	0	1	689700			2658	10440	1956	1965	3779	3779					0.06000876163079738
ARVTTRTL	8	Unmodified	_ARVTTRTL_					0	0	0		ENST00000495058.5_1_20:56822334-56847858:-|nuORF	ENST00000495058.5_1_20:56822334-56847858:-|nuORF	ENST00000495058.5_1_20:56822334-56847858:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.6999816894531	2	459.279983	916.545414	2.0758	0.00095339	-3.8922	-0.0017876	-1.8164	-0.00083424	459.2780155786055	93.76	1.4811	93.76	93.468	94.949	0					56	34	2	0	0	0	0.028476	1	10337	10337		64.207	27.048	1	1929700			2659	12768	1957	1966	3780	3780					0.08380295882943756
ARVTVKYDRR	10	Unmodified	_ARVTVKYDRR_					0	0	0		nc|ENSG00000167641|Q96A00-2|PPP1R14A;ENSG00000167641|ENST00000301242|PPP1R14A	nc|ENSG00000167641|Q96A00-2|PPP1R14A	nc|ENSG00000167641|Q96A00-2|PPP1R14A	MULTI-MSMS	OvCa9_classI_Rep3	3	632.3626708984375	2	632.367653	1262.72075	-6.4512	-0.0040795	-3.3593	-0.0021243	-9.8105	-0.0062039	632.3653623166105	163.09	0.65668	161.69	161.48	162.14	-1.3925					38	14	3	0	0	0	0.74374	1	14228	14228		25.574	2.0514	1	85467			2660	6820	1958	1967	3781	3781					0.09990090677160879
ARVVAVPLLL	10	Unmodified	_ARVVAVPLLL_					0	0	0			REV__ENST00000466194.1_1_1:26799713-26799887:+|nuORF	REV__ENST00000466194.1_1_1:26799713-26799887:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	525.857421875	2	525.855327	1049.6961	0.93824	0.00049338	0.95799	0.00050376	1.8962	0.00099714	525.855690526433	145.75	1.1323	145.75	145.39	146.52	0					59	22	4	0	0	0	0.58282	1	17075	17075		44.117	1.7207	1	451860	+		2661	26183	1959	1968	3782	3782					0.17324062541752028
ARVVAVPLLL	10	Unmodified	_ARVVAVPLLL_					0	0	0			REV__ENST00000466194.1_1_1:26799713-26799887:+|nuORF	REV__ENST00000466194.1_1_1:26799713-26799887:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.8547973632812	2	525.855327	1049.6961	-2.3923	-0.001258	2.3094	0.0012144	-0.082867	-4.3576E-05	525.856409395684	147.69	1.4012	146.25	145.88	147.28	-1.4351					56	27	3	0	0	0	0.58282	1	14530	14530		44.117	3.5442	1	76184	+		2662	26183	1959	1968	3783	3783					0.17324062541752028
ARVVLENDI	9	Unmodified	_ARVVLENDI_					0	0	0			REV__ENST00000526084.1_1_11:7690735-7690984:-|nuORF	REV__ENST00000526084.1_1_11:7690735-7690984:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.3062744140625	2	514.790381	1027.56621	1.7922	0.00092261	4.1128	0.0021172	5.905	0.0030398	514.7923031324009	117.53	1.6838	117.53	117.18	118.86	0					82	35	4	0	0	0	0.027426	1	13616	13616		76.774	12.567	1	1440500	+		2663	21187	1960	1969	3784	3784					0.05352841471949432
ARWPGFLE	8	Unmodified	_ARWPGFLE_					0	0	0		ENST00000566903.5_1_16:84215646-84216687:-|nuORF;ENST00000341690.10_1_16:84215646-84216700:-|nuORF	ENST00000566903.5_1_16:84215646-84216687:-|nuORF	ENST00000566903.5_1_16:84215646-84216687:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.7354736328125	2	488.255977	974.497401	3.3947	0.0016575	1.5579	0.00076067	4.9526	0.0024181	488.25672693908024	88.151	0.8404	88.151	88.003	88.843	0					24	19	2	0	0	0	0.028476	1	9434	9434		17.365	5.1581	1	226820			2664	10570	1961	1970	3785	3785					0.009132219628895655
ARWVEADARL	10	Unmodified	_ARWVEADARL_					0	0	0		ENSG00000156232|ENST00000286760|WHAMM	ENSG00000156232|ENST00000286760|WHAMM	ENSG00000156232|ENST00000286760|WHAMM	MULTI-MSMS	OvCa9_classI_Rep4_	4	593.8179931640625	2	593.820004	1185.62546	0.36929	0.00021929	-1.5965	-0.00094804	-1.2272	-0.00072875	593.8189617762521	128.17	1.5154	126.74	126.45	127.96	-1.4357					82	29	4	0	0	0	0.3094	1	12245	12245		79.713	2.395	1	392990			2665	5828	1962	1971	3786	3786					0.04006737486133716
ARYGVSRSEI	10	Unmodified	_ARYGVSRSEI_					0	0	0		sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3;sp|F5H8S6|US24_HCMVMTegumentproteinUS24OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US24PE=3SV=1	sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3	sp|P09700|US24_HCMVATegumentproteinUS24OS=Humancytomegalovirus(strainAD169)OX=10360GN=US24PE=3SV=3	MULTI-MSMS	OvCa99_classI_Rep5	1	569.805908203125	2	569.304187	1136.59382	2.2599	0.0012866	-1.7329	-0.00098656	0.52702	0.00030003	569.3041677140859	113.1	0.59002	113.1	112.74	113.33	0					27	12	3	0	0	0	0.58067	1	12884	12884		44.377	0.26039	1	398450			2666	32846	1963	1972	3787	3787					0.03098744732187697
ARYLLQET	8	Unmodified	_ARYLLQET_					0	0	0		ENSG00000197930|ENST00000395686|ERO1A;ENST00000556039.5_1_14:53110276-53130527:-|nuORF;ENST00000554019.5_1_14:53110290-53130527:-|nuORF	ENSG00000197930|ENST00000395686|ERO1A	ENSG00000197930|ENST00000395686|ERO1A	MULTI-SECPEP	OvCa9_classI_Rep3	3	496.2954406738281	2	497.271824	992.529095	-0.92508	-0.00046001	0.62287	0.00030974	-0.30221	-0.00015028	497.2720994261081	87.597	1.4336	85.421	84.683	86.117	-2.1768					81	27	4	0	0	0	0.028476	1	5297	5297		25.45	0	1	366730			2667	8763	1964	1973	3788	3788					0.03253169926199462
ARYLLQET	8	Unmodified	_ARYLLQET_					0	0	0		ENSG00000197930|ENST00000395686|ERO1A;ENST00000556039.5_1_14:53110276-53130527:-|nuORF;ENST00000554019.5_1_14:53110290-53130527:-|nuORF	ENSG00000197930|ENST00000395686|ERO1A	ENSG00000197930|ENST00000395686|ERO1A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	497.271824	992.529095	0.59665	0.0002967	-1.434	-0.00071309	-0.83735	-0.00041639	497.2710445364108	86.975	1.4359	85.544	84.803	86.239	-1.4311	0.049919	-0.001502	NaN	30.504	78	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242580			2668	8763	1964	1973							0.03253169926199462
ARYLRHIHRRF	11	Unmodified	_ARYLRHIHRRF_					0	0	0		ENSG00000183161|ENST00000327470|FANCF	ENSG00000183161|ENST00000327470|FANCF	ENSG00000183161|ENST00000327470|FANCF	MULTI-MSMS	OvCa99_classI_Rep5	1	509.2970275878906	3	508.963882	1523.86982	-0.15622	-7.9511E-05	-3.5212	-0.0017922	-3.6774	-0.0018717	508.9624357297428	22.913	0.87949	22.913	22.617	23.497	0					54	18	5	0	0	0	0.72545	1	298	298		9.6461	3.6451	1	432650			2669	8056	1965	1974	3789	3789					0.12883661090563692
ARYYARLIF	9	Unmodified	_ARYYARLIF_					0	0	0		ENST00000589797.5_1_17:40732947-40733403:-|nuORF	ENST00000589797.5_1_17:40732947-40733403:-|nuORF	ENST00000589797.5_1_17:40732947-40733403:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	586.8339233398438	2	586.832383	1171.65021	1.556	0.00091309	0.2339	0.00013726	1.7899	0.0010503	586.8325381417309	126.75	1.2122	126.75	126.37	127.58	0					80	26	4	0	0	0	0.22961	1	14663	14663		71.296	1.6681	1	7053200			2670	14096	1966	1975	3790	3790					0.07125417359520725
ARYYSVKKVTI	11	Unmodified	_ARYYSVKKVTI_					0	0	0		tr|A0A7D6VQD3|A0A7D6VQD3_9CLOTCobalt-precorrin-5BC(1)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=cbiDPE=3SV=1	tr|A0A7D6VQD3|A0A7D6VQD3_9CLOTCobalt-precorrin-5BC(1)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=cbiDPE=3SV=1	tr|A0A7D6VQD3|A0A7D6VQD3_9CLOTCobalt-precorrin-5BC(1)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=cbiDPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	444.2510681152344	3	443.2626	1326.76597	1.1977	0.0005309	-3.253	-0.001442	-2.0553	-0.00091105	443.2610583195321	46.626	1.1897	43.916	43.547	44.737	-2.7097					50	23	3	0	0	0	0.025818	1	2812	2812		23.378	0	1	30677			2671	34842	1967	1976	3791	3791					0.11565896419710953
ASAARLAPL	9	Unmodified	_ASAARLAPL_					0	0	0		ENST00000269593.4_1_17:38599756-38599807:+|nuORF	ENST00000269593.4_1_17:38599756-38599807:+|nuORF	ENST00000269593.4_1_17:38599756-38599807:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	435.2644958496094	2	435.263802	868.513051	0.61237	0.00026654	-0.77198	-0.00033602	-0.15961	-6.9473E-05	435.2633975595732	72.21	2.2467	69.703	69.016	71.262	-2.5072					103	42	3	0	0	0	0.094616	5	5819	5819;5825;5829;5835;5841		98.629	29.843	1	982300			2672	9987	1968	1977	3792;3793;3794;3795;3796	3792					0.07353508479945958
ASAARLAPL	9	Unmodified	_ASAARLAPL_					0	0	0		ENST00000269593.4_1_17:38599756-38599807:+|nuORF	ENST00000269593.4_1_17:38599756-38599807:+|nuORF	ENST00000269593.4_1_17:38599756-38599807:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	435.2645263671875	2	435.263802	868.513051	-0.54634	-0.0002378	0.17039	7.4165E-05	-0.37595	-0.00016364	435.2638630276679	73.205	1.9692	69.809	69.495	71.464	-3.3961					75	40	2	0	0	0	0.049969	5	5653	5653;5665;5677;5690;5705		118.74	33.828	1	3358300			2673	9987	1968	1977	3797;3798;3799;3800;3801	3797					0.07353508479945958
ASAARLAPL	9	Unmodified	_ASAARLAPL_					0	0	0		ENST00000269593.4_1_17:38599756-38599807:+|nuORF	ENST00000269593.4_1_17:38599756-38599807:+|nuORF	ENST00000269593.4_1_17:38599756-38599807:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	435.263802	868.513051	0.61753	0.00026879	-1.422	-0.00061892	-0.80442	-0.00035014	435.2631687220295	72.231	0.54234	69.629	69.376	69.919	-2.6023	-0.084486	-0.00087604	NaN	118.74	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8408.8			2674	9987	1968	1977							0.07353508479945958
ASAARLTMM	9	Acetyl (Protein N-term),2 Oxidation (M)	_(Acetyl (Protein N-term))ASAARLTM(Oxidation (M))M(Oxidation (M))_		ASAARLTM(1)M(1)		ASAARLTM(140)M(140)	1	0	2		ENSG00000132109|ENST00000254436|TRIM21;nc|ENSG00000132109|P19474-2|TRIM21	ENSG00000132109|ENST00000254436|TRIM21	ENSG00000132109|ENST00000254436|TRIM21	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.2424926757812	2	513.241352	1024.46815	-0.015069	-7.7342E-06	-0.63333	-0.00032505	-0.6484	-0.00033279	513.2408460400412	75.612	1.0615	72.673	72.304	73.365	-2.9389					55	21	3	0	0	0	0.029147	1	5969	5969		136.27	51.353	1	308190			2675	4109	1969	1978	3802	3802		129;130			-0.04310426439906223
ASAGHAVSI	9	Unmodified	_ASAGHAVSI_					0	0	0		nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;nc|ENSG00000085733|Q14247-2|CTTN	nc|ENSG00000085733|Q14247-3|CTTN	nc|ENSG00000085733|Q14247-3|CTTN	MULTI-MSMS	OvCa9_classI_Rep4_	4	406.7164611816406	2	406.716685	811.418816	0.82006	0.00033353	-0.57108	-0.00023227	0.24898	0.00010127	406.7163299467745	52.585	1.6673	49.377	49.094	50.762	-3.208					77	32	4	0	0	0	0.062324	2	3149	3149;3157		111.65	37.674	1	726540			2676	1737	1970	1979	3803;3804	3803					0.0055636965781786785
ASAVWVMGLVL	11	Unmodified	_ASAVWVMGLVL_					0	0	0			REV__ENST00000547670.5_1_12:49494396-49503620:-|nuORF	REV__ENST00000547670.5_1_12:49494396-49503620:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	573.3214111328125	2	573.323002	1144.63145	-0.55529	-0.00031836	2.2916	0.0013138	1.7363	0.00099548	573.3241366548903	103.22	1.3117	101.79	101.4	102.71	-1.4347					74	24	4	0	0	0	0.26464	1	7133	7133		71.296	6.1385	1	516010	+		2677	19624	1971	1980	3805	3805					0.06492119673430352
ASAYIIEAFSQ	11	Unmodified	_ASAYIIEAFSQ_					0	0	0		nc|ENSG00000185008|Q9HCK4-2|ROBO2;nc|ENSG00000185008|Q9HCK4|ROBO2;nc|ENSG00000185008|Q9HCK4-3|ROBO2;ENSG00000185008|ENST00000696593|ROBO2	nc|ENSG00000185008|Q9HCK4-2|ROBO2	nc|ENSG00000185008|Q9HCK4-2|ROBO2	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.2230224609375	3	400.536278	1198.587	0.99872	0.00040002	-0.38319	-0.00015348	0.61552	0.00024654	400.5360152777959	29.362	0.59863	29.362	29.137	29.735	0					15	11	2	0	0	0	0.025315	1	1060	1060		11.455	0	1	142030			2678	8210	1972	1981	3806	3806					-0.004346129390569331
ASCGPITLF	9	Unmodified	_ASCGPITLF_					0	0	0		ENST00000515332.5_1_4:108746149-108816471:+|nuORF;ENST00000503862.5_3_4:108746377-108829880:+|nuORF	ENST00000515332.5_1_4:108746149-108816471:+|nuORF	ENST00000515332.5_1_4:108746149-108816471:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	454.7307434082031	2	454.730946	907.447339	2.3414	0.0010647	-3.2156	-0.0014623	-0.87426	-0.00039755	454.72932689058257	99.797	1.7057	99.797	99.529	101.23	0					84	40	4	0	0	0	0.36502	1	11024	11024		55.504	3.205	1	13112000			2679	12868	1973	1982	3807	3807					-0.010086487572607439
ASCPGSILRVP	11	Unmodified	_ASCPGSILRVP_					0	0	0		ENST00000421779.2_1_2:220033802-220034706:-|nuORF	ENST00000421779.2_1_2:220033802-220034706:-|nuORF	ENST00000421779.2_1_2:220033802-220034706:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7532958984375	2	550.300059	1098.58556	1.3683	0.00075297	2.8442	0.0015652	4.2125	0.0023181	550.3017943721815	130.35	1.0966	130.35	129.77	130.87	0					51	22	3	0	0	0	0.025457	1	15079	15079		36.447	3.6343	1	245420			2680	11687	1974	1983	3808	3808					0.040214744912191236
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	OvCa9_classI_Rep2	2	504.29736328125	2	504.297842	1006.58113	-0.69872	-0.00035236	0.72606	0.00036615	0.027343	1.3789E-05	504.2979938045065	40.04	1.1397	37.33	37.052	38.192	-2.7097					47	22	3	0	0	0	0.22621	2	2004	1993;2004		71.877	11.759	1	159290		+	2681	1078	1975	1984	3809;3810	3810					0.07810333339944009
ASFDKAKLK	9	Unmodified	_ASFDKAKLK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.29730224609375	2	504.297842	1006.58113	-1.0826	-0.00054595	0.82198	0.00041452	-0.26061	-0.00013143	504.2981007547704	40.402	1.7021	37.448	36.764	38.466	-2.9541					71	32	3	0	0	0	0.1243	3	1730	1730;1743;1757		90.601	26.394	1	645280		+	2682	1078	1975	1984	3811;3812;3813	3811					0.07810333339944009
ASFIIANGAA	10	Unmodified	_ASFIIANGAA_					0	0	0		tr|A0A7D6ZMP3|A0A7D6ZMP3_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12815PE=3SV=1	tr|A0A7D6ZMP3|A0A7D6ZMP3_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12815PE=3SV=1	tr|A0A7D6ZMP3|A0A7D6ZMP3_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12815PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	467.75360107421875	2	467.753267	933.491981	-0.94508	-0.00044206	0.72897	0.00034098	-0.21611	-0.00010109	467.7535338341228	34.748	0.89492	34.748	34.444	35.339	0					52	18	4	0	0	0	0.46756	1	1691	1691		58.782	0.97068	1	2188100			2683	35666	1976	1985	3814	3814					0.022574983804133808
ASGLRSPVLI	10	Unmodified	_ASGLRSPVLI_					0	0	0			REV__ENST00000433430.5_1_2:233201010-233201337:+|nuORF	REV__ENST00000433430.5_1_2:233201010-233201337:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.811279296875	2	506.811116	1011.60768	-0.91945	-0.00046599	-1.1845	-0.0006003	-2.1039	-0.0010663	506.81048510289196	101.22	3.3613	98.954	98.29	101.65	-2.2665					172	65	4	0	0	0	0.48198	1	9179	9179		56.721	1.2168	1	2669900	+		2684	25748	1977	1986	3815	3815					0.10234022231293238
ASHLGPLLAL	10	Unmodified	_ASHLGPLLAL_					0	0	0		ENST00000599389.1_1_19:43016574-43016628:-|nuORF	ENST00000599389.1_1_19:43016574-43016628:-|nuORF	ENST00000599389.1_1_19:43016574-43016628:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.3003845214844	2	496.300384	990.586216	-0.20996	-0.0001042	-0.013117	-6.5099E-06	-0.22308	-0.00011071	496.30023015612176	123.47	1.2954	122.1	121.8	123.1	-1.3666					64	25	3	0	0	0	0.58282	1	11730	11730		44.117	1.7207	1	220800			2685	14209	1978	1987	3816	3816					0.0905463720255284
ASIFFVSIL	9	Unmodified	_ASIFFVSIL_					0	0	0		tr|A0A553SN20|A0A553SN20_NIACIDUF2157domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23520PE=4SV=1	tr|A0A553SN20|A0A553SN20_NIACIDUF2157domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23520PE=4SV=1	tr|A0A553SN20|A0A553SN20_NIACIDUF2157domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23520PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.790771484375	2	498.791861	995.569169	-0.82368	-0.00041084	-3.8314	-0.0019111	-4.6551	-0.0023219	498.78992392916325	116.11	3.0188	115.07	114.6	117.62	-1.0414					179	60	5	0	0	0	0.38529	1	8750	8750		53.351	3.9099	1	2745900			2686	33898	1979	1988	3817	3817					0.07120716596762122
ASIGNAQKL	9	Unmodified	_ASIGNAQKL_					0	0	0		ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	MULTI-MSMS	OvCa9_classI_Rep4_	4	451.2601623535156	2	451.258717	900.50288	-0.23794	-0.00010737	0.094508	4.2648E-05	-0.14344	-6.4726E-05	451.2586444685427	54.2	1.2819	50.953	50.671	51.953	-3.2474					44	24	2	0	0	0	0.083631	2	3344	3344;3355		101.6	10.945	1	524640			2687	2601	1980	1989	3818;3819	3818					0.048649007547169276
ASIGNAQKL	9	Unmodified	_ASIGNAQKL_					0	0	0		ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	ENSG00000107438|ENST00000329399|PDLIM1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	451.258717	900.50288	1.1189	0.00050491	-1.304	-0.00058844	-0.18511	-8.3533E-05	451.2579473338329	54.047	1.2965	51.233	50.826	52.122	-2.8139	0.14007	-0.00083641	NaN	101.6	69	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81967			2688	2601	1980	1989							0.048649007547169276
ASIGSTIFLMG	11	Unmodified	_ASIGSTIFLMG_					0	0	0		ENSG00000213064|ENST00000271375|SFT2D2	ENSG00000213064|ENST00000271375|SFT2D2	ENSG00000213064|ENST00000271375|SFT2D2	MULTI-MSMS	OvCa9_classI_Rep2	2	548.7880859375	2	548.788992	1095.56343	-2.3288	-0.001278	0.74261	0.00040753	-1.5862	-0.0008705	548.7895560724284	36.084	1.3822	33.375	33.152	34.534	-2.7097					51	27	2	0	0	0	0.69081	1	1531	1531		32.812	2.4947	1	294320			2689	9114	1981	1990	3820	3820					0.019472500227493583
ASIKQVIEFV	10	Unmodified	_ASIKQVIEFV_					0	0	0			REV__tr|A0A7D6ZU62|A0A7D6ZU62_9CLOTLactonasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22920PE=3SV=1	REV__tr|A0A7D6ZU62|A0A7D6ZU62_9CLOTLactonasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22920PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3296508789062	2	567.331882	1132.64921	-2.6412	-0.0014984	-1.2123	-0.00068778	-3.8535	-0.0021862	567.3310908608092	141.92	3.9983	140.91	138.91	142.91	-1.0106					224	80	5	0	0	0	0.67931	1	11755	11755		32.812	5.7651	1	127690	+		2690	32213	1982	1991	3821	3821					0.0881915819995811
ASKALDAEDKR	11	Unmodified	_ASKALDAEDKR_					0	0	0			REV__ENST00000504778.5_1_5:54552318-54579000:-|nuORF	REV__ENST00000504778.5_1_5:54552318-54579000:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	602.3208618164062	2	602.320034	1202.62551	-0.4413	-0.00026581	0.49181	0.00029623	0.050511	3.0424E-05	602.3202689284926	25.569	0.65047	25.569	25.342	25.992	0					40	12	5	0	0	0	0.65063	1	599	599		40.058	0	1	628950	+		2691	16293	1983	1992	3822	3822					0.03230692695456128
ASKIFTLED	9	Unmodified	_ASKIFTLED_					0	0	0			REV__ENST00000477870.5_1_20:39796371-39799023:+|nuORF	REV__ENST00000477870.5_1_20:39796371-39799023:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	512.2702026367188	2	512.27149	1022.52843	-1.0134	-0.00051915	-1.6723	-0.00085668	-2.6857	-0.0013758	512.2703093565345	139.72	1.0313	139.5	139.11	140.14	-0.22696					34	20	3	0	0	0	0.55588	1	13967	13967		37.159	6.6555	1	57929	+		2692	18670	1984	1993	3823	3823					0.018063304864767815
ASKKQRVAPRA	11	Unmodified	_ASKKQRVAPRA_					0	0	0		nc|ENSG00000148773|P46013-2|MKI67;ENSG00000148773|ENST00000368654|MKI67;ENST00000464771.1_1_10:129899883-129901361:-|nuORF	nc|ENSG00000148773|P46013-2|MKI67	nc|ENSG00000148773|P46013-2|MKI67	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3700561523438	2	606.370195	1210.72584	-3.14	-0.001904	2.1543	0.0013063	-0.98567	-0.00059768	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.72064	1	14992	14992		22.58	5.8623	1	257720			2693	5423	1985	1994	3824	3824					0.12890394539795125
ASKKQRVAPRA	11	Unmodified	_ASKKQRVAPRA_					0	0	0		nc|ENSG00000148773|P46013-2|MKI67;ENSG00000148773|ENST00000368654|MKI67;ENST00000464771.1_1_10:129899883-129901361:-|nuORF	nc|ENSG00000148773|P46013-2|MKI67	nc|ENSG00000148773|P46013-2|MKI67	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3690795898438	2	606.370195	1210.72584	-2.264	-0.0013728	1.1871	0.00071982	-1.0769	-0.00065302	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.71789	1	12571	12571		23.523	1.5628	1	205770			2694	5423	1985	1994	3825	3825					0.12890394539795125
ASLAGRTAPL	10	Unmodified	_ASLAGRTAPL_					0	0	0			REV__ENST00000503410.1_1_17:48047044-48050176:+|nuORF	REV__ENST00000503410.1_1_17:48047044-48050176:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.7792053222656	2	478.779816	955.545079	0.15186	7.2709E-05	-2.3367	-0.0011188	-2.1849	-0.0010461	478.77859349645075	75.028	2.9296	71.797	71.289	74.218	-3.2308					117	60	4	0	0	0	0.24425	1	5881	5881		87.696	2.7809	1	7866200	+		2695	26843	1986	1995	3826	3826					0.06552876163061683
ASLFLAFR	8	Unmodified	_ASLFLAFR_					0	0	0		ENST00000344736.8_1_X:153579396-153579986:-|nuORF	ENST00000344736.8_1_X:153579396-153579986:-|nuORF	ENST00000344736.8_1_X:153579396-153579986:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	462.7678527832031	2	462.76872	923.522887	-1.6143	-0.00074706	-2.28	-0.0010551	-3.8943	-0.0018022	462.76749070870113	38.258	1.04	35.548	35.37	36.41	-2.7097					45	20	4	0	0	0	0.73626	1	1812	1812		33.516	0.70317	1	313510			2696	10614	1987	1996	3827	3827					0.05806696485319662
ASLFLLLALYL	11	Unmodified	_ASLFLLLALYL_					0	0	0		ENST00000219596.5_1_16:3293056-3293140:-|nuORF	ENST00000219596.5_1_16:3293056-3293140:-|nuORF	ENST00000219596.5_1_16:3293056-3293140:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	412.92803955078125	3	412.924925	1235.75295	3.0705	0.0012679	1.8872	0.00077926	4.9577	0.0020472	412.9250835867229	57.228	1.0137	54.078	53.461	54.475	-3.1504					42	32	2	0	0	0	0.71321	1	1723	1723		25.126	5.8633	1	24423			2697	9684	1988	1997	3828	3828					0.14450065307619298
ASLLLHRLNVF	11	Unmodified	_ASLLLHRLNVF_					0	0	0			REV__tr|A0A553SS13|A0A553SS13_NIACIBranched-chainaminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_02285PE=3SV=1	REV__tr|A0A553SS13|A0A553SS13_NIACIBranched-chainaminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_02285PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8822021484375	2	641.885147	1281.75574	-3.6311	-0.0023307	-0.33677	-0.00021616	-3.9678	-0.0025469	641.8847801872174	153.39	4.0845	151.94	150.68	154.77	-1.4516					420	106	6	0	0	0	0.72473	1	15086	15086		19.104	0.84144	1	809780	+		2698	30789	1989	1998	3829	3829					0.12613333485114708
ASLPILIKHIT	11	Unmodified	_ASLPILIKHIT_					0	0	0			REV__ENST00000519262.5_1_8:58988145-59058545:+|nuORF	REV__ENST00000519262.5_1_8:58988145-59058545:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	402.2470703125	3	402.592058	1204.75434	1.1444	0.00046073	-3.2275	-0.0012994	-2.0831	-0.00083864	402.59058465052436	59.626	0.51499	56.846	56.557	57.072	-2.7801					12	9	2	0	0	0	0.026259	1	4333	4333		15.337	0	1	14163	+		2699	27042	1990	1999	3830	3830					0.16015699396348282
ASLPTIPGRVL	11	Unmodified	_ASLPTIPGRVL_					0	0	0		ENST00000476207.1_1_10:119765292-119774614:-|nuORF	ENST00000476207.1_1_10:119765292-119774614:-|nuORF	ENST00000476207.1_1_10:119765292-119774614:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	562.3433227539062	2	562.345323	1122.67609	-2.9015	-0.0016316	-0.70711	-0.00039764	-3.6086	-0.0020293	562.3448419475409	142.33	4.504	141.32	140	144.5	-1.0106					205	90	3	0	0	0	0.71498	1	11913	11913		24.519	1.9395	1	106680			2700	12462	1991	2000	3831	3831					0.11966266811123205
ASLSTFQQM	9	Unmodified	_ASLSTFQQM_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000196834|ENST00000451531|POTEI;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000188219|ENST00000683005|POTEE;ENST00000493945.5_1_7:5567381-5567853:-|nuORF;ENST00000507366.1_1_5:79595499-79595778:-|nuORF;ENST00000423783.1_1_17:17146010-17146160:+|nuORF;ENST00000428275.1_1_X:53172047-53172134:-|nuORF;ENST00000486001.1_1_1:27651822-27652284:+|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OvCa99_classI_Rep5	1	506.74334716796875	2	506.742042	1011.46953	1.3988	0.00070885	0.97571	0.00049443	2.3746	0.0012033	506.74238249753785	98.297	1.0437	98.297	97.912	98.955	0					55	24	4	0	0	0	0.094616	1	10828	10828		98.629	13.714	1	5007200			2701	1537;8634;5081	1992	2001	3832	3832					-0.035744690794899725
ASLTKCVALL	10	Unmodified	_ASLTKCVALL_					0	0	0		ENST00000472874.1_1_13:99498284-99512707:-|nuORF	ENST00000472874.1_1_13:99498284-99512707:-|nuORF	ENST00000472874.1_1_13:99498284-99512707:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.8037109375	2	509.801903	1017.58925	2.0238	0.0010317	1.6092	0.00082039	3.633	0.0018521	509.80258654056354	136.53	4.9049	134.99	133.61	138.51	-1.5437					290	101	5	0	0	0	0.59703	1	13421	13421		42.396	7.1954	1	173450			2702	12399	1993	2002	3833	3833					0.08116144265068215
ASLVSTAQRI	10	Unmodified	_ASLVSTAQRI_					0	0	0		ENSG00000196417|ENST00000396408|ZNF765;ENSG00000160336|ENST00000684525|ZNF761	ENSG00000196417|ENST00000396408|ZNF765	ENSG00000196417|ENST00000396408|ZNF765	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3036499023438	2	523.303655	1044.59276	-2.1228	-0.0011108	2.0352	0.001065	-0.087543	-4.5811E-05	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.69073	1	11594	11594		31.53	1.0262	1	183010			2703	8605	1994	2003	3834	3834					0.07224530363305348
ASLYKQQKFRR	11	Unmodified	_ASLYKQQKFRR_					0	0	0			REV__nc|ENSG00000136352|P43699|NKX2-1	REV__nc|ENSG00000136352|P43699|NKX2-1	MULTI-MSMS	OvCa9_classI_Rep3	3	475.60968017578125	3	475.608882	1423.80482	0.37352	0.00017765	-1.8586	-0.00088397	-1.4851	-0.00070633	475.6080683301692	81.355	3.0767	79.032	78.697	81.774	-2.3226					187	62	5	0	0	0	0.55686	2	4529	4512;4529		48.602	8.7284	1	5738700	+		2704	19380	1995	2004	3835;3836	3836					0.10986621774054584
ASMLQATMTKQ	11	Unmodified	_ASMLQATMTKQ_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	OvCa99_classI_Rep5	1	605.3076782226562	2	605.301941	1208.58933	1.9021	0.0011514	2.4048	0.0014556	4.3069	0.002607	605.3040913716757	122.73	0.73768	122.73	122.45	123.18	0					34	15	4	0	0	0	0.31264	1	14145	14145		67.494	3.2864	1	1212500			2705	4962	1996	2005	3837	3837					-0.0066222379725786595
ASNSVILHL	9	Unmodified	_ASNSVILHL_					0	0	0		ENSG00000186897|ENST00000334221|C1QL4;ENSG00000131094|ENST00000253407|C1QL1	REV__nc|ENSG00000106278|P23471-2|PTPRZ1	REV__nc|ENSG00000106278|P23471-2|PTPRZ1	MULTI-MSMS	OvCa9_classI_Rep3	3	477.27398681640625	2	477.274367	952.53418	0.018597	8.876E-06	0.38173	0.00018219	0.40033	0.00019107	477.2744808532267	94.399	1.1581	92.504	92.204	93.362	-1.8956					69	22	4	0	0	0	0.11471	1	6097	6097		93.195	16.349	1	548460	+		2706	17788	1997	2006	3838	3838					0.05601473788817657
ASNSVILHL	9	Unmodified	_ASNSVILHL_					0	0	0		ENSG00000186897|ENST00000334221|C1QL4;ENSG00000131094|ENST00000253407|C1QL1	REV__nc|ENSG00000106278|P23471-2|PTPRZ1	REV__nc|ENSG00000106278|P23471-2|PTPRZ1	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.2745361328125	2	477.274367	952.53418	-0.58496	-0.00027919	0.75082	0.00035835	0.16585	7.9157E-05	477.27461402501115	95.105	1.1042	92.636	92.31	93.414	-2.4685					63	21	4	0	0	0	0.074342	2	8349	8349;8362		104.75	25.296	1	543470	+		2707	17788	1997	2006	3839;3840	3839					0.05601473788817657
ASNSVILHL	9	Unmodified	_ASNSVILHL_					0	0	0		ENSG00000186897|ENST00000334221|C1QL4;ENSG00000131094|ENST00000253407|C1QL1	REV__nc|ENSG00000106278|P23471-2|PTPRZ1	REV__nc|ENSG00000106278|P23471-2|PTPRZ1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	477.274367	952.53418	2.1605	0.0010312	-0.32751	-0.00015631	1.833	0.00087485	477.2744946852151	92.932	0.58566	92.932	92.677	93.263	0	0.24639	-0.000894	NaN	104.75	19	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269820	+		2708	17788	1997	2006							0.05601473788817657
ASNSVILHL	9	Unmodified	_ASNSVILHL_					0	0	0		ENSG00000186897|ENST00000334221|C1QL4;ENSG00000131094|ENST00000253407|C1QL1	REV__nc|ENSG00000106278|P23471-2|PTPRZ1	REV__nc|ENSG00000106278|P23471-2|PTPRZ1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	477.274367	952.53418	-0.37068	-0.00017692	0.5003	0.00023878	0.12962	6.1867E-05	477.27448657299374	93.769	1.1304	92.669	92.329	93.46	-1.0995	-0.015852	-0.00010381	NaN	104.75	59	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	408560	+		2709	17788	1997	2006							0.05601473788817657
ASPAASISR	9	Unmodified	_ASPAASISR_					0	0	0		ENST00000521195.1_1_8:104320096-104343734:+|nuORF;nc|ENSG00000164930|O60353-2|FZD6;ENSG00000164930|ENST00000358755|FZD6	ENST00000521195.1_1_8:104320096-104343734:+|nuORF	ENST00000521195.1_1_8:104320096-104343734:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	429.2632141113281	2	430.235242	858.45593	-0.13506	-5.8108E-05	-0.093791	-4.0352E-05	-0.22885	-9.846E-05	430.2350977947493	41.29	0.8319	38.309	38.127	38.959	-2.9804					21	15	2	0	0	0	0.027455	1	1819	1819		26.693	15.827	1	71476			2710	6501	1998	2007	3841	3841					0.02104041203574525
ASPAASISR	9	Unmodified	_ASPAASISR_					0	0	0		ENST00000521195.1_1_8:104320096-104343734:+|nuORF;nc|ENSG00000164930|O60353-2|FZD6;ENSG00000164930|ENST00000358755|FZD6	ENST00000521195.1_1_8:104320096-104343734:+|nuORF	ENST00000521195.1_1_8:104320096-104343734:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	430.235242	858.45593	-0.3526	-0.0001517	0.95455	0.00041068	0.60195	0.00025898	430.23552728351143	38.273	0.4154	38.273	38.024	38.44	0	-0.12443	0.00085027	NaN	26.693	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83733			2711	6501	1998	2007							0.02104041203574525
ASPAASISR	9	Unmodified	_ASPAASISR_					0	0	0		ENST00000521195.1_1_8:104320096-104343734:+|nuORF;nc|ENSG00000164930|O60353-2|FZD6;ENSG00000164930|ENST00000358755|FZD6	ENST00000521195.1_1_8:104320096-104343734:+|nuORF	ENST00000521195.1_1_8:104320096-104343734:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	430.235242	858.45593	0.29485	0.00012685	-2.4537	-0.0010557	-2.1589	-0.00092883	430.2348428043748	41.32	0.73863	38.61	38.389	39.127	-2.7097	0.21265	-0.0020825	NaN	26.693	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65414			2712	6501	1998	2007							0.02104041203574525
ASPAPPLLRP	10	Unmodified	_ASPAPPLLRP_					0	0	0			REV__ENST00000502503.1_1_5:93410458-93447355:-|nuORF	REV__ENST00000502503.1_1_5:93410458-93447355:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	509.80352783203125	2	509.805834	1017.59712	-1.3099	-0.00066782	-2.9211	-0.0014892	-4.231	-0.002157	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.83261	1	11241	11241		14.865	0.20078	1	99460	+		2713	26826	1999	2008	3842	3842					0.08902039576832976
ASPAVALKAL	10	Unmodified	_ASPAVALKAL_					0	0	0		ENSG00000139517|ENST00000316334|LNX2	ENSG00000139517|ENST00000316334|LNX2	ENSG00000139517|ENST00000316334|LNX2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.7530517578125	2	470.794935	939.575317	-0.25493	-0.00012002	0.15428	7.2636E-05	-0.10065	-4.7384E-05	470.79485149054045	50.999	0.80352	47.826	47.568	48.372	-3.1734					27	15	2	0	0	0	0.02676	1	2975	2975		33.922	0	1	185280			2714	4779	2000	2009	3843	3843					0.10311234828270699
ASPPKTTGR	9	Unmodified	_ASPPKTTGR_					0	0	0		tr|A0A553SR39|A0A553SR39_NIACIAnhydro-N-acetylmuramicacidkinaseOS=NialliacirculansOX=1397GN=anmKPE=3SV=1	tr|A0A553SR39|A0A553SR39_NIACIAnhydro-N-acetylmuramicacidkinaseOS=NialliacirculansOX=1397GN=anmKPE=3SV=1	tr|A0A553SR39|A0A553SR39_NIACIAnhydro-N-acetylmuramicacidkinaseOS=NialliacirculansOX=1397GN=anmKPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.76776123046875	2	457.756341	913.498129	0.57864	0.00026488	-0.76008	-0.00034793	-0.18144	-8.3056E-05	457.7558930707572	38.008	0.69542	35.115	34.841	35.536	-2.8925					17	13	2	0	0	0	0.027455	1	1437	1437		34.173	13.226	1	10064			2715	34227	2001	2010	3844	3844					0.03792016611953386
ASSALEAILVR	11	Unmodified	_ASSALEAILVR_					0	0	0		tr|A0A553SPI0|A0A553SPI0_NIACIAcyltransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_26430PE=3SV=1	tr|A0A553SPI0|A0A553SPI0_NIACIAcyltransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_26430PE=3SV=1	tr|A0A553SPI0|A0A553SPI0_NIACIAcyltransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_26430PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	564.8095092773438	2	565.332413	1128.65027	-1.952	-0.0011035	1.5581	0.00088083	-0.39394	-0.00022271	565.3332121493004	37.613	0.4413	34.903	34.781	35.222	-2.7097					15	8	2	0	0	0	0.025594	1	1704	1704		49.536	22.843	1	19271			2716	34047	2002	2011	3845	3845					0.09109372568855179
ASSALEAILVR	11	Unmodified	_ASSALEAILVR_					0	0	0		tr|A0A553SPI0|A0A553SPI0_NIACIAcyltransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_26430PE=3SV=1	tr|A0A553SPI0|A0A553SPI0_NIACIAcyltransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_26430PE=3SV=1	tr|A0A553SPI0|A0A553SPI0_NIACIAcyltransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_26430PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	565.332413	1128.65027	1.712	0.00096782	-2.9994	-0.0016956	-1.2874	-0.00072782	565.3305915686905	37.721	0.64792	34.829	34.641	35.289	-2.8925	-0.037317	-0.0025199	NaN	49.536	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64809			2717	34047	2002	2011							0.09109372568855179
ASSDIQVKEL	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ASSDIQVKEL_					1	0	0		ENSG00000117632|ENST00000455785|STMN1;nc|ENSG00000117632|P16949-2|STMN1;ENST00000465604.1_1_1:26229981-26231212:-|nuORF	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	OvCa9_classI_Rep3	3	566.2986450195312	2	566.298236	1130.58192	-0.91483	-0.00051807	-0.010056	-5.6947E-06	-0.92489	-0.00052376	566.2978698656331	100.56	0.98025	98.952	98.518	99.498	-1.6053					67	19	5	0	0	0	0.13632	1	6827	6827		104.42	13.158	1	1325600			2718	3269	2003	2012	3846	3846					0.021850831983556418
ASSEEQAKQL	10	Unmodified	_ASSEEQAKQL_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.3212280273438	2	545.772385	1089.53022	-0.87429	-0.00047716	-4.1924	-0.0022881	-5.0666	-0.0027652	546.2723793975122	69.752	0.49147	69.752	69.513	70.005	0					16	11	2	0	0	0	0.026548	1	6659	6659		63.534	1.8426	1	237060	+		2719	20262	2004	2013	3847	3847					-0.010966604955683579
ASSPGGVYATR	11	Unmodified	_ASSPGGVYATR_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.2700805664062	2	533.269813	1064.52507	-2.7397	-0.001461	2.1522	0.0011477	-0.58753	-0.00031331	533.2708503258972	49.1	1.4044	45.959	45.728	47.132	-3.1416					50	26	3	0	0	0	0.45478	1	2747	2747		57.149	20.702	1	316820			2720	1049	2005	2014	3848	3848					-0.004609195675584488
ASSPGGVYATR	11	Unmodified	_ASSPGGVYATR_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MATCH	OvCa9_classI_Rep2	2		2	533.269813	1064.52507	-1.8558	-0.00098965	1.5798	0.00084245	-0.27603	-0.0001472	533.2705237717657	48.962	0.64268	46.202	45.979	46.621	-2.7603	0.12139	-0.00041751	NaN	57.149	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60078			2721	1049	2005	2014							-0.004609195675584488
ASSPNRTIQ	9	Unmodified	_ASSPNRTIQ_					0	0	0		nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP;nc|ENSG00000100106|Q9H2D6-4|TRIOBP;ENST00000492485.5_1_22:38106528-38122511:+|nuORF	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.2825622558594	2	487.256705	972.498858	0.32696	0.00015931	0.018839	9.1794E-06	0.3458	0.00016849	487.2570640376878	98.177	0.80739	95.798	95.418	96.226	-2.3786					21	15	2	0	0	0	0.027462	1	8768	8768		51.193	12.387	1	47775			2722	2010	2006	2015	3849	3849					0.011508112609931231
ASSPVLRQM	9	Unmodified	_ASSPVLRQM_					0	0	0		NCOA1|p.E1380Sfs*15|1|0.17|ENSG00000084676|chr2:24762758-24762759|AG/-|frameshift_variant;nc|ENSG00000084676|Q15788-2|NCOA1;nc|ENSG00000084676|Q15788-3|NCOA1;ENSG00000084676|ENST00000348332|NCOA1	NCOA1|p.E1380Sfs*15|1|0.17|ENSG00000084676|chr2:24762758-24762759|AG/-|frameshift_variant	NCOA1|p.E1380Sfs*15|1|0.17|ENSG00000084676|chr2:24762758-24762759|AG/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	494.7663879394531	2	494.765852	987.51715	-0.11411	-5.6459E-05	0.13842	6.8483E-05	0.024303	1.2024E-05	494.76575226369624	62.198	0.62768	62.198	61.953	62.581	0					34	14	3	0	0	0	0.22035	1	5515	5515		72.879	15.068	1	2326800			2723	1718	2007	2016	3850	3850					0.022892299113550507
ASSRRALLL	9	Unmodified	_ASSRRALLL_					0	0	0			REV__ENST00000432920.2_1_1:226111853-226111940:-|nuORF	REV__ENST00000432920.2_1_1:226111853-226111940:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	493.8097229003906	2	493.808908	985.603263	-0.75279	-0.00037174	0.47529	0.0002347	-0.2775	-0.00013703	493.8089337758927	53.283	0.52051	53.283	53.043	53.564	0					23	11	3	0	0	0	0.48324	1	4232	4232		44.117	2.6902	1	716290	+		2724	25738	2008	2017	3851	3851					0.10988557808377664
ASSSPRPLL	9	Unmodified	_ASSSPRPLL_					0	0	0		nc|ENSG00000173567|Q8IZF5-2|ADGRF3;nc|ENSG00000173567|Q8IZF5-3|ADGRF3;ENSG00000173567|ENST00000651242|ADGRF3;nc|ENSG00000173567|Q8IZF5|ADGRF3	nc|ENSG00000173567|Q8IZF5-2|ADGRF3	nc|ENSG00000173567|Q8IZF5-2|ADGRF3	MULTI-SECPEP	OvCa9_classI_Rep2	2	463.3006591796875	2	464.266542	926.51853	-1.2981	-0.00060264	1.0542	0.00048942	-0.24386	-0.00011322	464.26686804625746	84.388	1.4072	82.842	82.535	83.943	-1.5462					68	27	4	0	0	0	0.027343	1	7278	7278		58.782	12.83	1	162110			2725	7389	2009	2018	3852	3852					0.052331872717559236
ASSSPRPLL	9	Unmodified	_ASSSPRPLL_					0	0	0		nc|ENSG00000173567|Q8IZF5-2|ADGRF3;nc|ENSG00000173567|Q8IZF5-3|ADGRF3;ENSG00000173567|ENST00000651242|ADGRF3;nc|ENSG00000173567|Q8IZF5|ADGRF3	nc|ENSG00000173567|Q8IZF5-2|ADGRF3	nc|ENSG00000173567|Q8IZF5-2|ADGRF3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	464.266542	926.51853	-1.185	-0.00055015	0.96584	0.00044841	-0.21915	-0.00010175	464.2669671104597	85.269	1.5387	83.049	82.548	84.087	-2.2204	0.09957	0.00021057	NaN	58.782	75	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	326790			2726	7389	2009	2018							0.052331872717559236
ASSSTLPKKP	10	Unmodified	_ASSSTLPKKP_					0	0	0			REV__ENSG00000101367|ENST00000375571|MAPRE1	REV__ENSG00000101367|ENST00000375571|MAPRE1	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.2455139160156	2	508.292756	1014.57096	-0.3704	-0.00018827	0.11931	6.0647E-05	-0.25109	-0.00012763	508.29270028990044	35.912	0.82531	35.912	35.707	36.532	0					33	17	3	0	0	0	0.026968	1	1849	1849		29.17	12.697	1	567090	+		2727	17497	2010	2019	3853	3853					0.06425725614712974
ASTARHLYL	9	Unmodified	_ASTARHLYL_					0	0	0		ENSG00000105372|ENST00000598742|RPS19;ENST00000457967.1_1_1:113711666-113711915:+|nuORF	ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	MULTI-MSMS	OvCa9_classI_Rep2	2	516.284912109375	2	516.285266	1030.55598	-0.48899	-0.00025246	-0.030607	-1.5802E-05	-0.5196	-0.00026826	516.285153684191	57.372	1.6977	54.58	54.03	55.728	-2.792					82	33	3	0	0	0	0.1944	5	4072	4072;4077;4083;4089;4096		77.318	16.346	1	519060			2728	2447	2011	2020	3854;3855;3856;3857;3858	3854					0.04192278537357197
ASTARHLYL	9	Unmodified	_ASTARHLYL_					0	0	0		ENSG00000105372|ENST00000598742|RPS19;ENST00000457967.1_1_1:113711666-113711915:+|nuORF	ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.2866821289062	2	516.285266	1030.55598	-0.34066	-0.00017588	-0.66167	-0.00034161	-1.0023	-0.00051749	516.2849649091515	58.068	1.5558	54.723	54.444	56	-3.3449					55	30	2	0	0	0	0.38969	1	3795	3795		52.937	8.8199	1	1003400			2729	2447	2011	2020	3859	3859					0.04192278537357197
ASTFDPGNDLF	11	Unmodified	_ASTFDPGNDLF_					0	0	0			REV__tr|A0A7D7A391|A0A7D7A391_9CLOTTransposaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20770PE=4SV=1	REV__tr|A0A7D7A391|A0A7D7A391_9CLOTTransposaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20770PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	592.3019409179688	2	592.266936	1182.51932	-0.21373	-0.00012658	-3.3364	-0.001976	-3.5501	-0.0021026	592.2648858671105	82.725	0.82925	80.042	79.782	80.612	-2.683					35	16	3	0	0	0	0.025457	1	6831	6831		44.377	19.858	1	114160	+		2730	32574	2012	2021	3860	3860					-0.0646406286984984
ASTFDPGNDLF	11	Unmodified	_ASTFDPGNDLF_					0	0	0			REV__tr|A0A7D7A391|A0A7D7A391_9CLOTTransposaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20770PE=4SV=1	REV__tr|A0A7D7A391|A0A7D7A391_9CLOTTransposaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20770PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	592.266936	1182.51932	-0.027472	-1.6271E-05	-2.8422	-0.0016834	-2.8697	-0.0016996	592.2651461221756	81.984	0.98344	80.335	79.716	80.7	-1.6485	0.14661	0.00035575	NaN	44.377	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29572	+		2731	32574	2012	2021							-0.0646406286984984
ASTHGQTCLP	10	Carbamidomethyl (C)	_ASTHGQTC(Carbamidomethyl (C))LP_	ASTHGQTC(1)LP		ASTHGQTC(70)LP		0	1	0		nc|ENSG00000152348|Q9H0Y0-2|ATG10;ENSG00000152348|ENST00000282185|ATG10	nc|ENSG00000152348|Q9H0Y0-2|ATG10	nc|ENSG00000152348|Q9H0Y0-2|ATG10	MULTI-MSMS	OvCa9_classI_Rep3	3	536.2496337890625	2	536.248023	1070.48149	2.2652	0.0012147	2.0719	0.0011111	4.3372	0.0023258	536.2490458807978	120.46	1.5758	119.43	119.12	120.69	-1.0271					80	30	4	0	0	0	0.39172	1	9212	9212		69.628	8.6557	1	464170			2732	5618	2013	2022	3861	3861	55				-0.050928523363154454
ASTILHLVV	9	Unmodified	_ASTILHLVV_					0	0	0		ENSG00000129562|ENST00000250498|DAD1	ENSG00000129562|ENST00000250498|DAD1	ENSG00000129562|ENST00000250498|DAD1	MULTI-MSMS	OvCa9_classI_Rep2	2	476.7945556640625	2	476.794935	951.575317	-0.041831	-1.9945E-05	-0.26291	-0.00012536	-0.30474	-0.0001453	476.7946913581807	110.41	1.5792	110.23	109.96	111.54	-0.17237					69	31	3	0	0	0	0.27546	5	10401	10395;10401;10408;10421;10427		65.803	8.3025	1	711390			2733	3935	2014	2023	3862;3863;3864;3865;3866	3863					0.09759234828288754
ASTILHLVV	9	Unmodified	_ASTILHLVV_					0	0	0		ENSG00000129562|ENST00000250498|DAD1	ENSG00000129562|ENST00000250498|DAD1	ENSG00000129562|ENST00000250498|DAD1	MULTI-MSMS	OvCa9_classI_Rep3	3	476.79522705078125	2	476.794935	951.575317	2.0695	0.00098674	-2.5082	-0.0011959	-0.43868	-0.00020916	476.7936471807796	111.43	1.5804	110.33	110	111.58	-1.1038					70	31	3	0	0	0	0.36502	5	8086	8086;8092;8098;8104;8111		55.504	16.698	1	738660			2734	3935	2014	2023	3867;3868;3869;3870;3871	3867					0.09759234828288754
ASTILHLVV	9	Unmodified	_ASTILHLVV_					0	0	0		ENSG00000129562|ENST00000250498|DAD1	ENSG00000129562|ENST00000250498|DAD1	ENSG00000129562|ENST00000250498|DAD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.79498291015625	2	476.794935	951.575317	0.67009	0.0003195	-1.1183	-0.00053318	-0.44817	-0.00021368	476.79430466142145	111.9	1.8845	110.39	110.05	111.94	-1.5111					79	36	3	0	0	0	0.58665	1	10352	10352		33.516	1.5607	1	847840			2735	3935	2014	2023	3872	3872					0.09759234828288754
ASTSWTQVI	9	Unmodified	_ASTSWTQVI_					0	0	0		ENST00000535639.5_1_12:6556141-6557267:-|nuORF	ENST00000535639.5_1_12:6556141-6557267:-|nuORF	ENST00000535639.5_1_12:6556141-6557267:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	496.7561340332031	2	496.756007	991.497461	0.60851	0.00030228	-4.2686	-0.0021204	-3.66	-0.0018181	496.7538190668653	152.08	0.52281	152.08	151.83	152.36	0					19	10	2	0	0	0	0.55011	1	17811	17811		37.812	2.1932	1	130620			2736	13381	2015	2024	3873	3873					0.001371771722460835
ASTTVLALKLL	11	Unmodified	_ASTTVLALKLL_					0	0	0		nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4;nc|ENSG00000128815|Q6ZS81-5|WDFY4;ENST00000374161.7_3_10:50011336-50031259:+|nuORF	nc|ENSG00000128815|Q6ZS81-4|WDFY4	nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.36328125	2	565.363182	1128.71181	1.1007	0.00062228	-1.5162	-0.0008572	-0.41553	-0.00023493	565.3621660553404	123.19	1.698	121.83	121.51	123.2	-1.3666					79	33	4	0	0	0	0.43993	1	11677	11677		58.23	4.8785	1	287990			2737	3905	2016	2025	3874	3874					0.15260304268122127
ASTVNLRSRAM	11	Unmodified	_ASTVNLRSRAM_					0	0	0			REV__chr2:47377514-47378953|96|41.89|0.62|6.07|+|0|TE_info:AluSz6,AluSz6_dup5069,Alu,SINE,donor,-,47377230,47377514|None,EPCAM|2	REV__chr2:47377514-47378953|96|41.89|0.62|6.07|+|0|TE_info:AluSz6,AluSz6_dup5069,Alu,SINE,donor,-,47377230,47377514|None,EPCAM|2	MSMS	OvCa9_classI_Rep4_	4	603.3275146484375	2	603.324596	1204.63464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.124	1	73.185	72.685	73.685	-2.9389								0	0	0	0.19474	1	6028	6028		13.454	0	1		+		2738	16003	2017	2026	3875	3875					0.04050762780161676
ASTVRILEV	9	Unmodified	_ASTVRILEV_					0	0	0		ENSG00000178741|ENST00000322347|COX5A	ENSG00000178741|ENST00000322347|COX5A	ENSG00000178741|ENST00000322347|COX5A	MULTI-MSMS	OvCa9_classI_Rep2	2	494.2943420410156	2	494.295299	986.576045	1.7975	0.0008885	-2.2609	-0.0011176	-0.46343	-0.00022907	494.2941466087284	90.898	1.7806	89.662	88.598	90.379	-1.2355					117	34	4	0	0	0	0.40463	1	8056	8056		51.528	1.5032	1	1147000			2739	7771	2018	2027	3876	3876					0.08222029477337855
ASVDKVLEL	9	Unmodified	_ASVDKVLEL_					0	0	0		nc|ENSG00000152795|O14979-3|HNRNPDL;HNRNPDL|p.K289Nfs*3|1|0.69|ENSG00000152795|chr4:82427472-82427472|T/-|frameshift_variant;nc|ENSG00000152795|O14979-2|HNRNPDL;ENSG00000152795|ENST00000295470|HNRNPDL	nc|ENSG00000152795|O14979-3|HNRNPDL	nc|ENSG00000152795|O14979-3|HNRNPDL	MULTI-MSMS	OvCa9_classI_Rep2	2	487.28155517578125	2	487.281857	972.549162	0.41655	0.00020298	-1.4122	-0.00068813	-0.99564	-0.00048516	487.28120490509764	96.794	4.5464	95.835	95.182	99.728	-0.95857					234	91	6	0	0	0	0.027568	12	8733	8727;8733;8745;8751;8757;8763;8769;8775;8781;8793;8806;8821		138.06	33.316	1	7137300			2740	5646	2019	2028	3877;3878;3879;3880;3881;3882;3883;3884;3885;3886;3887;3888	3878					0.061789208661252815
ASVDKVLEL	9	Unmodified	_ASVDKVLEL_					0	0	0		nc|ENSG00000152795|O14979-3|HNRNPDL;HNRNPDL|p.K289Nfs*3|1|0.69|ENSG00000152795|chr4:82427472-82427472|T/-|frameshift_variant;nc|ENSG00000152795|O14979-2|HNRNPDL;ENSG00000152795|ENST00000295470|HNRNPDL	nc|ENSG00000152795|O14979-3|HNRNPDL	nc|ENSG00000152795|O14979-3|HNRNPDL	MULTI-MSMS	OvCa9_classI_Rep3	3	487.28228759765625	2	487.281857	972.549162	-0.97507	-0.00047514	-0.017053	-8.3098E-06	-0.99213	-0.00048345	487.28188680194495	97.554	2.9535	95.794	95.362	98.316	-1.7595					206	57	6	0	0	0	0.020196	14	6484	6454;6466;6472;6478;6484;6490;6496;6502;6508;6514;6520;6533;6539;6545		146.79	31.291	1	11571000			2741	5646	2019	2028	3889;3890;3891;3892;3893;3894;3895;3896;3897;3898;3899;3900;3901;3902	3893					0.061789208661252815
ASVDKVLEL	9	Unmodified	_ASVDKVLEL_					0	0	0		nc|ENSG00000152795|O14979-3|HNRNPDL;HNRNPDL|p.K289Nfs*3|1|0.69|ENSG00000152795|chr4:82427472-82427472|T/-|frameshift_variant;nc|ENSG00000152795|O14979-2|HNRNPDL;ENSG00000152795|ENST00000295470|HNRNPDL	nc|ENSG00000152795|O14979-3|HNRNPDL	nc|ENSG00000152795|O14979-3|HNRNPDL	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.28204345703125	2	487.281857	972.549162	0.31716	0.00015454	-1.3078	-0.00063728	-0.99067	-0.00048274	487.2812648001119	98.127	3.3235	95.748	95.216	98.54	-2.3786					197	64	5	0	0	0	0.012992	4	8720	8696;8708;8720;8732		159.28	21.496	1	10553000			2742	5646	2019	2028	3903;3904;3905;3906	3905					0.061789208661252815
ASVGAIFRSK	10	Unmodified	_ASVGAIFRSK_					0	0	0		tr|A0A7D6VXP0|A0A7D6VXP0_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09465PE=4SV=1	tr|A0A7D6VXP0|A0A7D6VXP0_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09465PE=4SV=1	tr|A0A7D6VXP0|A0A7D6VXP0_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09465PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.3161010742188	2	518.300916	1034.58728	-0.73565	-0.00038129	0.3372	0.00017477	-0.39845	-0.00020652	518.3010217577696	40.595	1.1299	40.595	40.2	41.33	0					45	24	3	0	0	0	0.026681	1	2482	2482		52.937	6.9847	1	651490			2743	35294	2020	2029	3907	3907					0.07136851571453917
ASVLRRSKLH	10	Unmodified	_ASVLRRSKLH_					0	0	0			REV__nc|ENSG00000165525|O60524-5|NEMF	REV__nc|ENSG00000165525|O60524-5|NEMF	MULTI-MSMS	OvCa99_classI_Rep5	1	583.8599243164062	2	583.859464	1165.70437	0.37379	0.00021824	-0.022682	-1.3243E-05	0.3511	0.000205	583.859324866827	159.93	1.5367	159.93	159.57	161.11	0					103	30	5	0	0	0	0.5675	1	18750	18750		45.972	1.5951	1	2253700	+		2744	21097	2021	2030	3908	3908					0.1281500951106409
ASVLRRSKLH	10	Unmodified	_ASVLRRSKLH_					0	0	0			REV__nc|ENSG00000165525|O60524-5|NEMF	REV__nc|ENSG00000165525|O60524-5|NEMF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	583.859464	1165.70437	0.37379	0.00021824	-0.022682	-1.3243E-05	0.3511	0.000205	583.859324866827	159.93	1.5367	159.93	159.57	161.11	0	0	0	NaN	45.972	103	30	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2253700	+		2745	21097	2021	2030							0.1281500951106409
ASVLTKDTIEL	11	Unmodified	_ASVLTKDTIEL_					0	0	0		tr|A0A553SH30|A0A553SH30_NIACIDihydrodipicolinatesynthasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_12000PE=3SV=1	tr|A0A553SH30|A0A553SH30_NIACIDihydrodipicolinatesynthasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_12000PE=3SV=1	tr|A0A553SH30|A0A553SH30_NIACIDihydrodipicolinatesynthasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_12000PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	595.3374633789062	2	595.337361	1188.66017	-2.0554	-0.0012237	1.4864	0.00088492	-0.56901	-0.00033875	595.3381573566538	149.58	1.2857	148.14	147.64	148.93	-1.4344					61	25	3	0	0	0	0.70142	1	14755	14755		29.17	4.6509	1	176250			2746	33229	2022	2031	3909	3909					0.07338515783567345
ASVSTVLTSKY	11	Unmodified	_ASVSTVLTSKY_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-MSMS	OvCa99_classI_Rep5	1	578.318603515625	2	578.316428	1154.6183	0.17479	0.00010109	2.1445	0.0012402	2.3193	0.0013413	578.3175580002753	81.263	0.70039	81.263	80.993	81.694	0					33	16	3	0	0	0	0.18846	1	8369	8369		81.525	46.347	1	3603900			2747	8476	2023	2032	3910	3910					0.04717960095035778
ASVSTVLTSKY	11	Unmodified	_ASVSTVLTSKY_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.3232421875	2	578.316428	1154.6183	-0.89326	-0.00051659	0.15467	8.9448E-05	-0.73859	-0.00042714	578.3165074578382	82.924	1.0709	80.241	79.979	81.05	-2.683					64	21	4	0	0	0	0.24327	2	6886	6873;6886		74.165	22.972	1	652500			2748	8476	2023	2032	3911;3912	3912					0.04717960095035778
ASVSTVLTSKY	11	Unmodified	_ASVSTVLTSKY_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	578.316428	1154.6183	-0.098392	-5.6902E-05	-0.65265	-0.00037744	-0.75105	-0.00043434	578.3161777697484	81.984	1.2996	80.335	79.971	81.271	-1.6485	0.028325	-0.00078005	NaN	74.165	64	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	322270			2749	8476	2023	2032							0.04717960095035778
ASVSTVLTSKY	11	Unmodified	_ASVSTVLTSKY_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	578.316428	1154.6183	-1.822	-0.0010537	0.4675	0.00027036	-1.3545	-0.00078331	578.3167857532841	82.641	1.3157	80.345	80.039	81.354	-2.2963	0.037901	0.00051556	NaN	74.165	75	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	568610			2750	8476	2023	2032							0.04717960095035778
ATAAAVAKF	9	Unmodified	_ATAAAVAKF_					0	0	0			REV__ENST00000409371.7_1_4:6202075-6202225:-|nuORF	REV__ENST00000409371.7_1_4:6202075-6202225:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	425.7743835449219	2	425.245078	848.475603	0.40677	0.00017298	-1.075	-0.00045713	-0.66821	-0.00028415	425.2444718340503	71.578	1.2058	69.071	68.594	69.799	-2.5071					30	22	2	0	0	0	0.027462	1	5715	5715		23.042	6.5693	1	30265	+		2751	25467	2024	2033	3913	3913					0.04530417214323279
ATAAAVAKF	9	Unmodified	_ATAAAVAKF_					0	0	0			REV__ENST00000409371.7_1_4:6202075-6202225:-|nuORF	REV__ENST00000409371.7_1_4:6202075-6202225:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	425.245078	848.475603	-1.1778	-0.00050087	0.40214	0.00017101	-0.77569	-0.00032986	425.2451337362773	72.725	1.1137	69.329	69.058	70.172	-3.3961	0.12905	0.00042944	NaN	23.042	38	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108690	+		2752	25467	2024	2033							0.04530417214323279
ATAARVKVTG	10	Unmodified	_ATAARVKVTG_					0	0	0		ENST00000472427.5_1_9:129677191-129778941:+|nuORF;ENST00000373439.6_1_9:129677191-129831664:+|nuORF	ENST00000472427.5_1_9:129677191-129778941:+|nuORF	ENST00000472427.5_1_9:129677191-129778941:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	487.2926940917969	2	487.293091	972.571629	-1.5876	-0.0007736	1.367	0.00066614	-0.22054	-0.00010747	487.2937066188987	143.42	1.0862	143.19	142.8	143.89	-0.22696					37	21	2	0	0	0	0.81208	1	14400	14400		17.468	0.10304	1	43295			2753	11009	2025	2034	3914	3914					0.08424565054428967
ATACCPGILI	10	Unmodified	_ATACCPGILI_					0	0	0			REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	MULTI-SECPEP	OvCa9_classI_Rep2	2	480.7825622558594	2	481.245906	960.477259	-0.88426	-0.00042555	0.88442	0.00042562	0.00015718	7.5644E-08	481.2463785323112	47.729	1.0426	45.02	44.687	45.729	-2.7097					46	20	3	0	0	0	0.026552	1	3009	3009		27.882	0	1	86652	+		2754	19085	2026	2035	3915	3915					-0.004560330835829518
ATAELLKK	8	Unmodified	_ATAELLKK_					0	0	0		ENST00000462151.5_1_1:155228612-155231516:-|nuORF;ENST00000465312.5_1_1:155227300-155231996:-|nuORF;ENST00000490999.5_1_1:155226066-155230310:-|nuORF;nc|ENSG00000116521|O14828-2|SCAMP3;ENSG00000116521|ENST00000302631|SCAMP3	ENST00000462151.5_1_1:155228612-155231516:-|nuORF	ENST00000462151.5_1_1:155228612-155231516:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	438.2506103515625	2	437.273835	872.533118	-0.43442	-0.00018996	0.60693	0.00026539	0.17251	7.5436E-05	437.27395004814446	40.492	0.93855	37.538	37.162	38.101	-2.9541					28	17	2	0	0	0	0.028476	1	1742	1742		30.504	0	1	39240			2755	3183	2027	2036	3916	3916					0.0917525941989652
ATAEWLAPI	9	Unmodified	_ATAEWLAPI_					0	0	0			REV__ENST00000366131.6_1_12:6462937-6464599:-|nuORF	REV__ENST00000366131.6_1_12:6462937-6464599:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.7796325683594	2	486.263468	970.512382	0.56649	0.00027546	2.972	0.0014452	3.5385	0.0017206	486.2648328241877	68.443	0.69003	64.953	64.622	65.312	-3.4902					22	13	2	0	0	0	0.027433	1	5049	5049		42.396	9.5837	1	246550	+		2756	24874	2028	2037	3917	3917					0.02594669040217923
ATAIGKPGPE	10	Unmodified	_ATAIGKPGPE_					0	0	0		ENST00000359786.9_2_17:1368754-1368982:-|nuORF	ENST00000359786.9_2_17:1368754-1368982:-|nuORF	ENST00000359786.9_2_17:1368754-1368982:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.8014831542969	2	470.758549	939.502546	-0.029648	-1.3957E-05	0.758	0.00035684	0.72836	0.00034288	470.7584972744049	52.823	1.5154	49.615	49.298	50.813	-3.208					46	29	3	0	0	0	0.026681	1	3196	3196		44.377	17.581	1	211760			2757	10755	2029	2038	3918	3918					0.03037481034857592
ATAIGKPGPE	10	Unmodified	_ATAIGKPGPE_					0	0	0		ENST00000359786.9_2_17:1368754-1368982:-|nuORF	ENST00000359786.9_2_17:1368754-1368982:-|nuORF	ENST00000359786.9_2_17:1368754-1368982:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	470.758549	939.502546	-1.2527	-0.00058971	1.9011	0.00089498	0.64846	0.00030527	470.7589693289875	52.652	1.0858	49.839	49.542	50.628	-2.8134	0.11195	0.00068184	NaN	44.377	30	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39962			2758	10755	2029	2038							0.03037481034857592
ATAIGTSINV	10	Unmodified	_ATAIGTSINV_					0	0	0		tr|A0A7D6ZIV5|A0A7D6ZIV5_9CLOTAspartateammonia-lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08580PE=4SV=1	tr|A0A7D6ZIV5|A0A7D6ZIV5_9CLOTAspartateammonia-lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08580PE=4SV=1	tr|A0A7D6ZIV5|A0A7D6ZIV5_9CLOTAspartateammonia-lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08580PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.7649230957031	2	473.763832	945.513111	-0.091647	-4.3419E-05	-0.66872	-0.00031681	-0.76036	-0.00036023	473.76356368919807	48.486	1.8562	45.379	44.684	46.54	-3.1077					89	35	5	0	0	0	0.44431	1	2699	2699		62.107	1.9892	1	576010			2759	35626	2030	2039	3919	3919					0.03817463689279066
ATAIYFTA	8	Unmodified	_ATAIYFTA_					0	0	0		ENSG00000013306|ENST00000377095|SLC25A39;nc|ENSG00000013306|Q9BZJ4-2|SLC25A39	ENSG00000013306|ENST00000377095|SLC25A39	ENSG00000013306|ENST00000377095|SLC25A39	MULTI-SECPEP	OvCa9_classI_Rep4_	4	429.7692565917969	2	429.223811	856.433069	-0.17657	-7.5788E-05	0.3538	0.00015186	0.17723	7.607E-05	429.22385296517047	81.515	0.77376	78.805	78.592	79.365	-2.7106					19	15	2	0	0	0	0.028476	1	6743	6743		19.36	4.6959	1	29248			2760	983	2031	2040	3920	3920					-0.0008897791391291321
ATAKGKYVL	9	Unmodified	_ATAKGKYVL_					0	0	0		tr|A0A7D6W168|A0A7D6W168_9CLOTFtsW/RodA/SpoVEfamilycellcycleproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02600PE=4SV=1	tr|A0A7D6W168|A0A7D6W168_9CLOTFtsW/RodA/SpoVEfamilycellcycleproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02600PE=4SV=1	tr|A0A7D6W168|A0A7D6W168_9CLOTFtsW/RodA/SpoVEfamilycellcycleproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02600PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	475.78692626953125	2	475.78711	949.559667	-1.1284	-0.0005369	1.2052	0.00057342	0.07677	3.6526E-05	475.7874490810867	140.15	0.93607	139.11	138.74	139.68	-1.0339					36	18	3	0	0	0	0.68424	1	11522	11522		21.96	1.4781	1	94016			2761	35401	2032	2041	3921	3921					0.08286948311229025
ATALIHSI	8	Unmodified	_ATALIHSI_					0	0	0		tr|A0A7D6W0X4|A0A7D6W0X4_9CLOTNADH-quinoneoxidoreductasesubunitNuoFOS=ClostridiumintestinaleOX=36845GN=HZF06_01040PE=3SV=1	tr|A0A7D6W0X4|A0A7D6W0X4_9CLOTNADH-quinoneoxidoreductasesubunitNuoFOS=ClostridiumintestinaleOX=36845GN=HZF06_01040PE=3SV=1	tr|A0A7D6W0X4|A0A7D6W0X4_9CLOTNADH-quinoneoxidoreductasesubunitNuoFOS=ClostridiumintestinaleOX=36845GN=HZF06_01040PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.90350341796875	2	413.245078	824.475603	0.48979	0.0002024	-0.47941	-0.00019811	0.010382	4.2904E-06	413.2446209902296	68.505	0.45958	68.505	68.274	68.733	0					22	10	3	0	0	0	0.028476	1	6458	6458		52.299	9.8247	1	684950			2762	35390	2033	2042	3922	3922					0.056344172143212745
ATALIHSI	8	Unmodified	_ATALIHSI_					0	0	0		tr|A0A7D6W0X4|A0A7D6W0X4_9CLOTNADH-quinoneoxidoreductasesubunitNuoFOS=ClostridiumintestinaleOX=36845GN=HZF06_01040PE=3SV=1	tr|A0A7D6W0X4|A0A7D6W0X4_9CLOTNADH-quinoneoxidoreductasesubunitNuoFOS=ClostridiumintestinaleOX=36845GN=HZF06_01040PE=3SV=1	tr|A0A7D6W0X4|A0A7D6W0X4_9CLOTNADH-quinoneoxidoreductasesubunitNuoFOS=ClostridiumintestinaleOX=36845GN=HZF06_01040PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	413.245078	824.475603	-0.72736	-0.00030058	0.8123	0.00033568	0.08494	3.5101E-05	413.24514135368554	72.116	0.97235	68.66	68.317	69.289	-3.4563	0.077546	0.00084838	NaN	52.299	25	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14607			2763	35390	2033	2042							0.056344172143212745
ATANQIILK	9	Unmodified	_ATANQIILK_					0	0	0		PCCA-MBNL2|3|fusion;PCCA-MBNL2|1|fusion;nc|ENSG00000139793|Q5VZF2-2|MBNL2	PCCA-MBNL2|3|fusion	PCCA-MBNL2|3|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	486.2969970703125	2	486.297842	970.581131	-0.12742	-6.1964E-05	-0.14191	-6.9011E-05	-0.26933	-0.00013097	486.2976847902578	67.082	1.9792	64.421	63.651	65.631	-2.661					87	39	3	0	0	0	0.013371	3	5221	5221;5226;5233		158.07	32.261	1	739520			2764	15050	2034	2043	3923;3924;3925	3923					0.09466333339946686
ATANQIILK	9	Unmodified	_ATANQIILK_					0	0	0		PCCA-MBNL2|3|fusion;PCCA-MBNL2|1|fusion;nc|ENSG00000139793|Q5VZF2-2|MBNL2	PCCA-MBNL2|3|fusion	PCCA-MBNL2|3|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.2984619140625	2	486.297842	970.581131	1.3501	0.00065657	-1.9596	-0.00095295	-0.60948	-0.00029639	486.2968981719962	67.799	1.667	64.308	63.938	65.605	-3.4902					89	33	4	0	0	0	0.0078313	3	5006	4982;4993;5006		180.87	14.968	1	3362200			2765	15050	2034	2043	3926;3927;3928	3928					0.09466333339946686
ATAPGTPISL	10	Unmodified	_ATAPGTPISL_					0	0	0		ENST00000560168.1_1_19:46269581-46272089:-|nuORF	ENST00000560168.1_1_19:46269581-46272089:-|nuORF	ENST00000560168.1_1_19:46269581-46272089:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	463.7337951660156	2	464.260925	926.507297	-0.080827	-3.7525E-05	-2.8763	-0.0013354	-2.9572	-0.0013729	464.2594472487648	56.557	0.74055	56.557	56.178	56.918	0					24	17	3	0	0	0	0.026665	1	4680	4680		34.173	2.2177	1	635320			2766	13729	2035	2044	3929	3929					0.04110365177609765
ATAPKPMPPRP	11	Unmodified	_ATAPKPMPPRP_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.7924194335938	2	581.823701	1161.63285	0.86486	0.0005032	2.2869	0.0013306	3.1518	0.0018338	581.8249139750048	79.13	0.4006	79.13	78.911	79.311	0					16	9	2	0	0	0	0.025466	1	8069	8069		65.465	8.7443	1	1274700			2767	7526	2036	2045	3930	3930					0.05849753762186083
ATAPLREAALL	11	Unmodified	_ATAPLREAALL_					0	0	0			REV__ENST00000318782.8_1_16:3019292-3019526:+|nuORF	REV__ENST00000318782.8_1_16:3019292-3019526:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.3525390625	2	563.334956	1124.65536	0.81429	0.00045872	-3.4601	-0.0019492	-2.6459	-0.0014905	563.3337407686545	117.42	0.62733	116.06	115.93	116.56	-1.3645					12	11	2	0	0	0	0.025749	1	10994	10994		70.816	5.013	1	23939	+		2768	24426	2037	2046	3931	3931					0.09801676431447959
ATAQLSKLL	9	Unmodified	_ATAQLSKLL_					0	0	0			REV__TEX10|p.E856Gfs*24|1|0.03|ENSG00000136891|chr9:100303741-100303742|-/TC|frameshift_variant	REV__TEX10|p.E856Gfs*24|1|0.03|ENSG00000136891|chr9:100303741-100303742|-/TC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.7650146484375	2	472.792392	943.570232	0.32615	0.0001542	-0.48993	-0.00023164	-0.16378	-7.7434E-05	472.7920450123843	48.279	0.92764	45.171	44.938	45.866	-3.1077					37	17	3	0	0	0	0.027447	1	2673	2673		47.657	0	1	111550	+		2769	19420	2038	2047	3932	3932					0.0961893096566655
ATARLLIAK	9	Unmodified	_ATARLLIAK_					0	0	0		ENST00000396516.6_1_16:11859475-11861299:-|nuORF	ENST00000396516.6_1_16:11859475-11861299:-|nuORF	ENST00000396516.6_1_16:11859475-11861299:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.7518615722656	2	478.816202	955.617851	-0.67731	-0.00032431	1.3683	0.00065514	0.69095	0.00033084	478.81719491861054	51.071	0.30164	47.898	47.771	48.072	-3.1734					8	5	2	0	0	0	0.027462	1	2965	2965		11.511	1.2458	1	14452			2770	11317	2039	2048	3933	3933					0.13826629956508896
ATASQDYVAFL	11	Unmodified	_ATASQDYVAFL_					0	0	0			REV__ENSG00000135744|ENST00000366667|AGT	REV__ENSG00000135744|ENST00000366667|AGT	MULTI-SECPEP	OvCa9_classI_Rep2	2	593.9913330078125	2	593.292953	1184.57135	-0.28529	-0.00016926	-0.84896	-0.00050368	-1.1342	-0.00067294	593.2927142392887	70.557	0.86663	67.986	67.663	68.53	-2.5707					26	16	3	0	0	0	0.025594	1	5614	5614		49.536	6.6718	1	20084	+		2771	19317	2040	2049	3934	3934					-0.013548994561006111
ATASVNLKV	9	Unmodified	_ATASVNLKV_					0	0	0		ENSG00000164985|ENST00000380733|PSIP1;nc|ENSG00000164985|O75475-3|PSIP1;nc|ENSG00000164985|O75475-2|PSIP1;PSIP1|p.R404Gfs*8|1|0.67|ENSG00000164985|chr9:15468840-15468840|G/-|frameshift_variant	ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	MULTI-MSMS	OvCa99_classI_Rep5	1	451.7694396972656	2	451.768917	901.523281	0.21821	9.8581E-05	0.47911	0.00021645	0.69732	0.00031503	451.76903545673036	69.302	0.69308	69.302	69.063	69.756	0					36	16	4	0	0	0	0.03923	1	6584	6584		127.46	8.7186	1	1758100			2772	6509	2041	2050	3935	3935					0.06858071414524147
ATATLALTLP	10	Unmodified	_ATATLALTLP_					0	0	0			REV__tr|A0A553SL42|A0A553SL42_NIACIATP-dependentDNAhelicaseRecQOS=NialliacirculansOX=1397GN=CEQ21_19910PE=4SV=1	REV__tr|A0A553SL42|A0A553SL42_NIACIATP-dependentDNAhelicaseRecQOS=NialliacirculansOX=1397GN=CEQ21_19910PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.2870788574219	2	486.292225	970.569897	-0.054457	-2.6482E-05	0.23113	0.0001124	0.17667	8.5915E-05	486.2921627370028	105.27	0.65807	105.27	105	105.66	0					29	14	3	0	0	0	0.026553	1	11797	11797		56.721	10.749	1	683790	+		2773	30183	2042	2051	3936	3936					0.08343511245789159
ATAVLLLLLVG	11	Unmodified	_ATAVLLLLLVG_					0	0	0			REV__ENSG00000182578|ENST00000675795|CSF1R	REV__ENSG00000182578|ENST00000675795|CSF1R	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.268798828125	2	541.862818	1081.71108	0.05197	2.8161E-05	-2.8846	-0.0015631	-2.8327	-0.0015349	541.861147141598	57.129	0.64706	57.129	56.833	57.48	0					26	14	3	0	0	0	0.025746	1	4777	4777		19.104	0	1	319440	+		2774	22303	2043	2052	3937	3937					0.17349509619089076
ATAVPRLLH	9	Unmodified	_ATAVPRLLH_					0	0	0		ENSG00000116819|ENST00000373235|TFAP2E	ENSG00000116819|ENST00000373235|TFAP2E	ENSG00000116819|ENST00000373235|TFAP2E	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.27203369140625	2	489.298176	976.581799	-0.39659	-0.00019405	-2.2394	-0.0010957	-2.6359	-0.0012898	489.29708257942605	60.342	0.63919	60.342	59.879	60.518	0					24	15	2	0	0	0	0.027448	1	5191	5191		44.117	12.162	1	193780			2775	3211	2044	2053	3938	3938					0.09257172779666689
ATAYSVRQ	8	Unmodified	_ATAYSVRQ_					0	0	0		chr11:62210690-62213726|143|130.72|0.12|10.05|+|2|None,SCGB2A1|2	chr11:62210690-62213726|143|130.72|0.12|10.05|+|2|None,SCGB2A1|2	chr11:62210690-62213726|143|130.72|0.12|10.05|+|2|None,SCGB2A1|2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	447.2406311035156	2	448.235242	894.45593	0.69368	0.00031093	0.23972	0.00010745	0.93341	0.00041839	448.23525409162534	60.417	0.89346	56.987	56.65	57.544	-3.43					30	17	2	0	0	0	0.028476	1	4055	4055		30.504	12.179	1	35679			2776	294	2045	2054	3939	3939					0.004480412035718473
ATDFYPLQ	8	Unmodified	_ATDFYPLQ_					0	0	0		nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2;nc|ENSG00000078269|O15056-3|SYNJ2	nc|ENSG00000078269|O15056-2|SYNJ2	nc|ENSG00000078269|O15056-2|SYNJ2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.2828063964844	2	477.732	953.449448	0.55919	0.00026714	1.2833	0.00061308	1.8425	0.00088023	477.732428148481	60.504	0.74616	57.074	56.848	57.594	-3.43					29	14	3	0	0	0	0.028476	1	4103	4103		18.324	0	1	63519			2777	1591	2046	2055	3940	3940					-0.02913896747816125
ATDVSALFCCN	11	Unmodified	_ATDVSALFCCN_					0	0	0		nc|ENSG00000151812|A4IF30-2|SLC35F4;ENSG00000151812|ENST00000556826|SLC35F4;nc|ENSG00000151812|A4IF30|SLC35F4	nc|ENSG00000151812|A4IF30-2|SLC35F4	nc|ENSG00000151812|A4IF30-2|SLC35F4	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.356689453125	2	572.244092	1142.47363	-0.19959	-0.00011422	3.6095	0.0020655	3.4099	0.0019513	572.2458916154732	30.654	0.34816	30.654	30.483	30.831	0					18	6	4	0	0	0	0.025861	1	1213	1213		17.468	0	1	143280			2778	5586	2047	2056	3941	3941					-0.09190747648085562
ATEPQMVLF	9	Unmodified	_ATEPQMVLF_					0	0	0		PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant;PRPF8|p.Q2065Hfs*8|1|0.04|ENSG00000174231|chr17:1653809-1653810|-/G|frameshift_variant;ENSG00000174231|ENST00000304992|PRPF8;PITPNA-PRPF8|1|fusion	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant;PITPNA-PRPF8|1|fusion	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	518.26171875	2	518.26261	1034.51067	1.3847	0.00071764	-1.471	-0.00076234	-0.086252	-4.4701E-05	518.2616936757189	128.68	1.5825	128.45	128.13	129.71	-0.22696					76	31	3	0	0	0	0.50149	1	12640	12640		42.396	3.1433	1	418450			2779	7449;15503	2048	2057	3942	3942					-0.0052070804001687065
ATFFGIQLLK	10	Unmodified	_ATFFGIQLLK_					0	0	0		ENST00000562439.5_1_16:57238447-57238567:+|nuORF	ENST00000562439.5_1_16:57238447-57238567:+|nuORF	ENST00000562439.5_1_16:57238447-57238567:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	569.3375244140625	2	569.336967	1136.65938	-0.3257	-0.00018543	0.31329	0.00017837	-0.012409	-7.065E-06	569.3370354387997	133.82	0.68835	133.59	133.36	134.05	-0.22696					31	13	3	0	0	0	0.62299	3	13255	13242;13249;13255		39.253	8.662	1	48456			2780	13772	2049	2058	3943;3944;3945	3945					0.09651765925195832
ATFFGIQLLK	10	Unmodified	_ATFFGIQLLK_					0	0	0		ENST00000562439.5_1_16:57238447-57238567:+|nuORF	ENST00000562439.5_1_16:57238447-57238567:+|nuORF	ENST00000562439.5_1_16:57238447-57238567:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	569.336967	1136.65938	-0.95295	-0.00054255	1.3299	0.00075716	0.37694	0.00021461	569.3374707451287	134.76	0.69212	133.64	133.41	134.1	-1.1226	0.055345	0.0018805	NaN	39.253	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32225			2781	13772	2049	2058							0.09651765925195832
ATFRAPAPSPP	11	Unmodified	_ATFRAPAPSPP_					0	0	0			REV__PRRC2A|p.G1884Rfs*57|1|0.07|ENSG00000204469|chr6:31636227-31636228|-/C|frameshift_variant	REV__PRRC2A|p.G1884Rfs*57|1|0.07|ENSG00000204469|chr6:31636227-31636228|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	556.2965698242188	2	556.298373	1110.58219	-0.88867	-0.00049436	-1.365	-0.00075934	-2.2537	-0.0012537	556.297489303825	146.66	1.1662	145.22	144.86	146.02	-1.4357					51	22	3	0	0	0	0.71191	1	14412	14412		25.574	1.3713	1	134020	+		2782	23157	2050	2059	3946	3946					0.031325477088330445
ATGEGILLLA	10	Unmodified	_ATGEGILLLA_					0	0	0		tr|A0A7D6ZFL3|A0A7D6ZFL3_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15465PE=4SV=1	tr|A0A7D6ZFL3|A0A7D6ZFL3_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15465PE=4SV=1	tr|A0A7D6ZFL3|A0A7D6ZFL3_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15465PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	478.2950744628906	2	479.2844	956.554247	-0.059494	-2.8514E-05	-3.7655	-0.0018048	-3.825	-0.0018333	479.2840315477124	97.788	0.24714	96.029	95.913	96.16	-1.7595					6	4	2	0	0	0	0.026697	1	6500	6500		29.15	3.6994	1	24338			2783	35513	2051	2060	3947	3947					0.07423224728768218
ATGELSRAHLL	11	Unmodified	_ATGELSRAHLL_					0	0	0		ENST00000475241.1_1_2:42282060-42282234:+|nuORF	ENST00000475241.1_1_2:42282060-42282234:+|nuORF	ENST00000475241.1_1_2:42282060-42282234:+|nuORF	MSMS	OvCa99_classI_Rep5	1	584.333251953125	2	584.327662	1166.64077	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.36	1	115.36	114.86	115.86	0								0	0	0	0.19276	1	13181	13181		42.864	0.46813	1				2784	12446	2052	2061	3948	3948					0.06411604283334782
ATGILPILTL	10	Unmodified	_ATGILPILTL_					0	0	0			REV__tr|A0A7D6VRQ5|A0A7D6VRQ5_9CLOTTypeVIIsecretionproteinEssCOS=ClostridiumintestinaleOX=36845GN=essCPE=4SV=1	REV__tr|A0A7D6VRQ5|A0A7D6VRQ5_9CLOTTypeVIIsecretionproteinEssCOS=ClostridiumintestinaleOX=36845GN=essCPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.7762145996094	2	506.326068	1010.63758	-0.44613	-0.00022589	-2.4195	-0.0012251	-2.8656	-0.0014509	506.32470614075066	55.497	0.69532	55.497	55.193	55.888	0					43	16	4	0	0	0	0.026956	1	4516	4516		26.693	14.486	1	3797000	+		2785	31435	2053	2062	3949	3949					0.13268961176606808
ATGISALALL	10	Unmodified	_ATGISALALL_					0	0	0		tr|A0A553SFG3|A0A553SFG3_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08835PE=3SV=1	tr|A0A553SFG3|A0A553SFG3_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08835PE=3SV=1	tr|A0A553SFG3|A0A553SFG3_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08835PE=3SV=1	MSMS	OvCa99_classI_Rep5	1	465.28704833984375	2	465.286943	928.559333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.83	1	148.83	148.33	149.33	0								0	0	0	0.1438	1	17421	17421		35.618	12.576	1				2786	33036	2054	2063	3950	3950					0.09219528591370363
ATGISALALL	10	Unmodified	_ATGISALALL_					0	0	0		tr|A0A553SFG3|A0A553SFG3_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08835PE=3SV=1	tr|A0A553SFG3|A0A553SFG3_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08835PE=3SV=1	tr|A0A553SFG3|A0A553SFG3_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08835PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	465.2852478027344	2	465.286943	928.559333	-1.6358	-0.00076114	-1.5296	-0.00071171	-3.1655	-0.0014728	465.28614320640764	142.28	1.4816	142.05	141.52	143	-0.22697					68	29	3	0	0	0	0.76627	1	14304	14304		23.042	1.0826	1	102120			2787	33036	2054	2063	3951	3951					0.09219528591370363
ATGLPKPLSG	10	Unmodified	_ATGLPKPLSG_					0	0	0			REV__ENST00000596517.1_1_19:41305794-41306505:+|nuORF	REV__ENST00000596517.1_1_19:41305794-41306505:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.8143310546875	2	470.776742	939.538931	0.54756	0.00025778	-0.46286	-0.00021791	0.084694	3.9872E-05	470.7768537755789	66.774	0.49158	63.284	63.099	63.59	-3.4902					11	9	2	0	0	0	0.027021	1	4903	4903		21.96	1.013	1	30525	+		2788	27996	2055	2064	3952	3952					0.06674357931581198
ATGLYKKRFTK	11	Unmodified	_ATGLYKKRFTK_					0	0	0			REV__ENST00000487990.5_1_21:35932136-35932283:-|nuORF	REV__ENST00000487990.5_1_21:35932136-35932283:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	439.24847412109375	3	438.262712	1311.76631	-0.18217	-7.9837E-05	-3.5246	-0.0015447	-3.7067	-0.0016245	438.2617381712776	51.596	0.25045	48.423	48.323	48.573	-3.1734					7	4	2	0	0	0	0.026033	1	3046	3046		22.562	0	1	6070.6	+		2789	26614	2056	2065	3953	3953					0.12289316139549555
ATGPPRLVL	9	Unmodified	_ATGPPRLVL_					0	0	0			REV__ENSG00000198535|ENST00000355522|C2CD4A	REV__ENSG00000198535|ENST00000355522|C2CD4A	MULTI-MSMS	OvCa9_classI_Rep2	2	462.2875061035156	2	462.287277	922.560001	-1.6663	-0.0007703	0.90288	0.00041739	-0.7634	-0.00035291	462.28766330557994	85.301	1.5459	83.81	83.357	84.903	-1.4906					91	30	4	0	0	0	0.079296	2	7357	7357;7378		102.77	1.5618	1	1328200	+		2790	23025	2057	2066	3954;3955	3954					0.09562368031083679
ATGRFLSATLF	11	Unmodified	_ATGRFLSATLF_					0	0	0			REV__chrX:154489082-154489162|107|11.44|0.32|5.15|-|2|SLC10A3,None|1	REV__chrX:154489082-154489162|107|11.44|0.32|5.15|-|2|SLC10A3,None|1	MULTI-SECPEP	OvCa9_classI_Rep3	3	592.3024291992188	2	592.327131	1182.63971	-1.2393	-0.00073405	-0.62953	-0.00037289	-1.8688	-0.0011069	592.326732813569	82.358	1.4484	80.062	79.484	80.932	-2.2963					55	28	3	0	0	0	0.025418	1	4573	4573		40.058	15.539	1	62089	+		2791	16135	2058	2067	3956	3956					0.05569389914421663
ATIEKQQRWLF	11	Unmodified	_ATIEKQQRWLF_					0	0	0			REV__nc|ENSG00000186470|P78410-2|BTN3A2	REV__nc|ENSG00000186470|P78410-2|BTN3A2	MULTI-MSMS	OvCa9_classI_Rep3	3	473.92828369140625	3	473.929621	1418.76703	-6.0595	-0.0028718	4.1974	0.0019893	-1.8621	-0.00088251	473.93111268931267	162.59	1.1094	161.2	160.75	161.85	-1.3925					55	23	4	0	0	0	0.72472	1	14166	14166		19.263	0.73163	1	97868	+		2792	22588	2059	2068	3957	3957					0.07440110788593302
ATIRNVLR	8	Unmodified	_ATIRNVLR_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;ENST00000450651.5_1_22:21841260-21846319:-|nuORF;nc|ENSG00000290425|Q8N8J0|PI4KAP1;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;ENST00000467443.5_1_22:21831964-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2-4|PI4KAP2	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	OvCa99_classI_Rep5	1	471.796875	2	471.795801	941.577048	0.30092	0.00014197	-0.07055	-3.3285E-05	0.23037	0.00010869	471.79561716177096	62.41	0.69488	62.41	62.165	62.86	0					43	16	4	0	0	0	0.62934	1	5549	5549		57.811	8.3697	1	3460500			2793	9359	2060	2069	3958	3958					0.1039228863688777
ATKGGNKKFL	10	Unmodified	_ATKGGNKKFL_					0	0	0		EGFLAM|p.S615Yfs*24|1|0.07|ENSG00000164318|chr5:38427041-38427042|-/A|frameshift_variant;EGFLAM|p.I639Tfs*73|1|0.4|ENSG00000164318|chr5:38427111-38427126|AGATCACATTTCGGCC/-|frameshift_variant;nc|ENSG00000164318|Q63HQ2-4|EGFLAM;ENSG00000164318|ENST00000322350|EGFLAM;nc|ENSG00000164318|Q63HQ2|EGFLAM;EGFLAM|p.K296Rfs*23|1|0.13|ENSG00000164318|chr5:38406884-38406884|G/-|frameshift_variant	EGFLAM|p.S615Yfs*24|1|0.07|ENSG00000164318|chr5:38427041-38427042|-/A|frameshift_variant	EGFLAM|p.S615Yfs*24|1|0.07|ENSG00000164318|chr5:38427041-38427042|-/A|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.8165893554688	2	532.316566	1062.61858	0.98199	0.00052273	2.9906	0.0015919	3.9726	0.0021147	532.3177898032961	137.52	1.1779	135.98	135.57	136.75	-1.5437					43	25	3	0	0	0	0.027056	1	13380	13380		20.947	0	1	21704			2794	782	2061	2070	3959	3959					0.0897742460556401
ATKKPKEKPP	10	Unmodified	_ATKKPKEKPP_					0	0	0		ENSG00000106624|ENST00000223357|AEBP1	ENSG00000106624|ENST00000223357|AEBP1	ENSG00000106624|ENST00000223357|AEBP1	MULTI-MSMS	OvCa9_classI_Rep2	2	562.34326171875	2	562.345323	1122.67609	-1.142	-0.00064221	-2.621	-0.0014739	-3.7631	-0.0021161	562.3438081477608	141.84	4.7959	141.62	140.24	145.03	-0.22697					133	96	2	0	0	0	0.75313	1	14418	14418		24.519	0.31644	1	113870			2795	2565	2062	2071	3960	3960					0.11966266811123205
ATKLPLRAM	9	Unmodified	_ATKLPLRAM_					0	0	0			REV__ENSG00000130487|ENST00000648057|KLHDC7B	REV__ENSG00000130487|ENST00000648057|KLHDC7B	MULTI-MSMS	OvCa9_classI_Rep3	3	500.7983703613281	2	500.802237	999.589921	-4.5773	-0.0022923	-3.1922	-0.0015987	-7.7695	-0.003891	500.8005489314557	149.34	2.1117	148.39	147.7	149.81	-0.9512					96	41	4	0	0	0	0.62352	1	12635	12635		29.15	4.9468	1	278740	+		2796	18949	2063	2072	3961	3961					0.09010983704786213
ATKNKYIT	8	Unmodified	_ATKNKYIT_					0	0	0		tr|A0A553SKQ0|A0A553SKQ0_NIACITranscriptionalrepressorOS=NialliacirculansOX=1397GN=CEQ21_19150PE=3SV=1	tr|A0A553SKQ0|A0A553SKQ0_NIACITranscriptionalrepressorOS=NialliacirculansOX=1397GN=CEQ21_19150PE=3SV=1	tr|A0A553SKQ0|A0A553SKQ0_NIACITranscriptionalrepressorOS=NialliacirculansOX=1397GN=CEQ21_19150PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	469.2771911621094	2	469.768917	937.523281	0.49269	0.00023145	-0.73639	-0.00034593	-0.2437	-0.00011448	469.7684646162563	78.2	0.76414	75.384	75.116	75.88	-2.8165					41	15	4	0	0	0	0.028476	1	6321	6321		51.335	8.9393	1	1084200			2797	33641	2064	2073	3962	3962					0.05202071414510101
ATLAHWPHRCP	11	Unmodified	_ATLAHWPHRCP_					0	0	0		ENST00000590628.1_1_19:28296677-28296926:+|nuORF	ENST00000590628.1_1_19:28296677-28296926:+|nuORF	ENST00000590628.1_1_19:28296677-28296926:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	430.2173156738281	3	430.217108	1287.62949	-0.14708	-6.3275E-05	1.3231	0.00056921	1.176	0.00050593	430.2176169987273	44.745	0.71774	44.745	44.484	45.202	0					39	15	3	0	0	0	0.62666	1	3044	3044		42.243	0.41768	1	1073400			2798	14110	2065	2074	3963	3963					-0.0028149629181370983
ATLEKVRKR	9	Unmodified	_ATLEKVRKR_					0	0	0		nc|ENSG00000263155|P0CAP1-8|MYZAP;nc|ENSG00000263155|P0CAP1-5|MYZAP;nc|ENSG00000263155|P0CAP1-7|MYZAP;nc|ENSG00000263155|P0CAP1-6|MYZAP;nc|ENSG00000263155|P0CAP1-4|MYZAP;nc|ENSG00000263155|P0CAP1-2|MYZAP;ENSG00000263155|ENST00000267853|MYZAP;nc|ENSG00000263155|P0CAP1-11|MYZAP	nc|ENSG00000263155|P0CAP1-8|MYZAP	nc|ENSG00000263155|P0CAP1-8|MYZAP	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.8175659179688	2	550.848564	1099.68258	-0.40958	-0.00022562	0.29294	0.00016137	-0.11664	-6.425E-05	551.3512258953283	23.1	0.20357	23.1	22.94	23.144	0					5	3	2	0	0	0	0.027462	1	274	274		15.642	12.232	1	31401			2799	9514	2066	2075	3964	3964					0.13672204762519868
ATLIRVLKP	9	Unmodified	_ATLIRVLKP_					0	0	0			REV__nc|ENSG00000179583|P33076|CIITA	REV__nc|ENSG00000179583|P33076|CIITA	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.8096923828125	2	505.839677	1009.6648	1.3023	0.00065875	0.17705	8.9559E-05	1.4793	0.00074831	505.839557440854	88.008	0.63757	86.608	86.366	87.004	-1.4001					18	12	2	0	0	0	0.027462	1	7743	7743		27.882	4.8398	1	52845	+		2800	22129	2067	2076	3965	3965					0.16035489507657985
ATLQSPVVS	9	Unmodified	_ATLQSPVVS_					0	0	0			REV__nc|ENSG00000169696|Q9BZE9-4|ASPSCR1	REV__nc|ENSG00000169696|Q9BZE9-4|ASPSCR1	MULTI-SECPEP	OvCa9_classI_Rep2	2	450.2696838378906	2	451.2531	900.491647	1.4469	0.00065294	0.13908	6.2759E-05	1.586	0.0007157	451.2527418809072	60.81	2.1461	58.039	56.62	58.766	-2.7702					50	40	2	0	0	0	0.027402	1	4557	4557		31.53	11.533	1	33459	+		2801	28996	2068	2077	3966	3966					0.03742078660570769
ATLRVVPTSYQ	11	Unmodified	_ATLRVVPTSYQ_					0	0	0			REV__tr|A0A7D6ZNL8|A0A7D6ZNL8_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16965PE=4SV=1	REV__tr|A0A7D6ZNL8|A0A7D6ZNL8_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16965PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.90350341796875	3	412.231189	1233.67174	0.35817	0.00014765	0.082614	3.4056E-05	0.44078	0.0001817	412.2312077613525	68.335	0.696	68.335	67.996	68.692	0					21	16	2	0	0	0	0.025508	1	6458	6458		41.08	24.55	1	925500	+		2802	32120	2069	2078	3967	3967					0.06424757597574171
ATLRVVPTSYQ	11	Unmodified	_ATLRVVPTSYQ_					0	0	0			REV__tr|A0A7D6ZNL8|A0A7D6ZNL8_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16965PE=4SV=1	REV__tr|A0A7D6ZNL8|A0A7D6ZNL8_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16965PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		3	412.231189	1233.67174	1.2752	0.00052569	-0.48376	-0.00019942	0.79148	0.00032627	412.2308595041977	70.72	1.365	68	67.648	69.013	-2.7196	-0.204	-0.00055936	NaN	27.644	73	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52968	+		2803	32120	2069	2078							0.06424757597574171
ATLRVVPTSYQ	11	Unmodified	_ATLRVVPTSYQ_					0	0	0			REV__tr|A0A7D6ZNL8|A0A7D6ZNL8_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16965PE=4SV=1	REV__tr|A0A7D6ZNL8|A0A7D6ZNL8_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16965PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	412.231189	1233.67174	-0.47769	-0.00019692	0.52449	0.00021621	0.046803	1.9294E-05	412.23115678499084	71.733	1.0248	68.277	67.924	68.949	-3.4563	0.072842	0.00068753	NaN	27.644	49	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44127	+		2804	32120	2069	2078							0.06424757597574171
ATNGVLHIL	9	Unmodified	_ATNGVLHIL_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;STAB1|p.G1393Afs*11|1|0.46|ENSG00000010327|chr3:52516388-52516389|-/C|frameshift_variant	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MSMS	OvCa9_classI_Rep2	2	469.27618408203125	2	469.276909	936.539266	-0.1914	-8.9818E-05	-0.12165	-5.709E-05	-0.31305	-0.00014691	469.27678078499304	97.645	1.9743	96.686	96.365	98.339	-0.95857					104	39	4	0	0	0	0.0071018	8	8853	8835;8841;8847;8853;8860;8866;8873;8880		221.53	0	1	1162200			2805	945	2070	2079	3968;3969;3970;3971;3972;3973;3974;3975	3971					0.06845777651415119
ATNGVLHIL	9	Unmodified	_ATNGVLHIL_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;STAB1|p.G1393Afs*11|1|0.46|ENSG00000010327|chr3:52516388-52516389|-/C|frameshift_variant	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MSMS	OvCa9_classI_Rep3	3	469.27734375	2	469.276909	936.539266	0.033989	1.595E-05	-0.40828	-0.0001916	-0.37429	-0.00017565	469.2766826238183	98.459	1.5942	96.7	96.16	97.754	-1.7595					81	30	4	0	0	0	0.0071018	8	6574	6572;6574;6580;6586;6593;6599;6606;6611		207.6	0	1	1551200			2806	945	2070	2079	3976;3977;3978;3979;3980;3981;3982;3983	3977					0.06845777651415119
ATNGVLHIL	9	Unmodified	_ATNGVLHIL_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;STAB1|p.G1393Afs*11|1|0.46|ENSG00000010327|chr3:52516388-52516389|-/C|frameshift_variant	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	469.278076171875	2	469.276909	936.539266	-0.010962	-5.1443E-06	-0.5235	-0.00024567	-0.53447	-0.00025081	469.2766169879302	99.091	1.5383	96.766	96.228	97.766	-2.3253					81	29	4	0	0	0	0.0073143	5	8816	8816;8828;8841;8853;8868		191.63	0	1	1416000			2807	945	2070	2079	3984;3985;3986;3987;3988	3984					0.06845777651415119
ATNPISRVL	9	Unmodified	_ATNPISRVL_					0	0	0		ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	MULTI-MSMS	OvCa9_classI_Rep2	2	485.7877197265625	2	485.787641	969.56073	0.825	0.00040078	-1.6014	-0.00077795	-0.77641	-0.00037717	485.7867400161408	87.055	2.3197	85.623	84.751	87.071	-1.4311					114	45	4	0	0	0	0.16264	6	7576	7571;7576;7582;7588;7594;7608		82.75	23.343	1	767590			2808	2641	2071	2080	3989;3990;3991;3992;3993;3994	3990					0.07473162680150836
ATNPISRVL	9	Unmodified	_ATNPISRVL_					0	0	0		ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	MULTI-MSMS	OvCa9_classI_Rep3	3	485.788330078125	2	485.787641	969.56073	-1.1407	-0.00055413	0.81681	0.0003968	-0.32387	-0.00015733	485.7879140600141	87.774	2.3065	85.597	84.985	87.291	-2.1768					97	45	4	0	0	0	0.1944	5	5290	5285;5290;5302;5308;5315		77.318	18.536	1	1238400			2809	2641	2071	2080	3995;3996;3997;3998;3999	3996					0.07473162680150836
ATNPISRVL	9	Unmodified	_ATNPISRVL_					0	0	0		ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	ENSG00000108256|ENST00000225388|NUFIP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.7886047363281	2	485.787641	969.56073	-2.4364	-0.0011836	1.4911	0.00072436	-0.94534	-0.00045924	485.78818782578804	88.256	2.2477	85.653	84.874	87.122	-2.6027					99	44	4	0	0	0	0.16264	3	7530	7518;7530;7542		82.75	10.597	1	1024400			2810	2641	2071	2080	4000;4001;4002	4001					0.07473162680150836
ATNRPGKNL	9	Unmodified	_ATNRPGKNL_					0	0	0		MGA|p.D2061Vfs*3|1|0.09|ENSG00000174197|chr15:41749788-41749789|-/T|frameshift_variant;MGA|p.D2295Tfs*40|1|0.55|ENSG00000174197|chr15:41750489-41750489|T/-|frameshift_variant;ENSG00000174197|ENST00000703841|MGA;nc|ENSG00000174197|Q8IWI9|MGA;nc|ENSG00000174197|Q8IWI9-3|MGA	MGA|p.D2061Vfs*3|1|0.09|ENSG00000174197|chr15:41749788-41749789|-/T|frameshift_variant	MGA|p.D2061Vfs*3|1|0.09|ENSG00000174197|chr15:41749788-41749789|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	485.78857421875	2	485.775065	969.535577	-0.89598	-0.00043524	-4.4033	-0.002139	-5.2993	-0.0025743	485.773636818674	88.386	1.0979	86.255	85.7	86.798	-2.1309					37	21	4	0	0	0	0.027433	1	5330	5330		19.997	0	1	65654			2811	7446	2072	2081	4003	4003					0.04959107877573388
ATPARLVTAL	10	Unmodified	_ATPARLVTAL_					0	0	0			REV__ENSG00000181499|ENST00000321252|OR6T1	REV__ENSG00000181499|ENST00000321252|OR6T1	MULTI-MSMS	OvCa9_classI_Rep2	2	506.8100891113281	2	506.811116	1011.60768	1.4081	0.00071364	-2.4174	-0.0012251	-1.0093	-0.00051151	506.809990859047	88.555	2.3705	87.187	86.69	89.061	-1.3676					168	47	5	0	0	0	0.37436	2	7785	7785;7816		71.877	1.981	1	5233500	+		2812	22236	2073	2082	4004;4005	4004					0.10234022231270501
ATPARLVTALI	11	Unmodified	_ATPARLVTALI_					0	0	0			REV__ENSG00000181499|ENST00000321252|OR6T1	REV__ENSG00000181499|ENST00000321252|OR6T1	MULTI-MSMS	OvCa9_classI_Rep2	2	563.352783203125	2	563.353148	1124.69174	-0.51442	-0.0002898	-0.73977	-0.00041675	-1.2542	-0.00070655	563.3531834496299	116.13	2.03	116.01	115.64	117.67	-0.11777					126	40	5	0	0	0	0.52474	2	11173	11071;11173		51.528	3.8704	1	2302900	+		2813	22236	2074	2083	4006;4007	4007					0.13438553328182934
ATPERTRL	8	Unmodified	_ATPERTRL_					0	0	0			REV__nc|ENSG00000204305|Q15109-9|AGER	REV__nc|ENSG00000204305|Q15109-9|AGER	MULTI-MSMS	OvCa99_classI_Rep5	1	472.2696838378906	2	472.269616	942.524678	-0.47979	-0.00022659	0.50363	0.00023785	0.023837	1.1258E-05	472.2697485497393	28.913	0.34877	28.913	28.739	29.087	0					11	6	2	0	0	0	0.74229	1	992	992		30.504	6.3009	1	107250	+		2814	29101	2075	2084	4008	4008					0.051117055032818826
ATPLLVLSL	9	Unmodified	_ATPLLVLSL_					0	0	0			REV__ENST00000469444.6_1_2:172949561-172951418:+|nuORF	REV__ENST00000469444.6_1_2:172949561-172951418:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.79913330078125	2	463.799686	925.584819	-1.4154	-0.00065646	-2.4017	-0.0011139	-3.8171	-0.0017704	463.7985594679424	71.828	2.2794	68.371	68.074	70.354	-3.4563					134	46	4	0	0	0	0.48324	1	5578	5578		44.117	12.162	1	2935000	+		2815	26241	2076	2085	4009	4009					0.11905003113804469
ATPLYTLGV	9	Unmodified	_ATPLYTLGV_					0	0	0		nc|ENSG00000101187|Q96BD0-2|SLCO4A1;SLCO4A1|p.R607Pfs*2|1|0.07|ENSG00000101187|chr20:62668482-62668483|-/A|frameshift_variant;nc|ENSG00000101187|Q96BD0-3|SLCO4A1;nc|ENSG00000101187|Q96BD0-4|SLCO4A1;ENSG00000101187|ENST00000217159|SLCO4A1	nc|ENSG00000101187|Q96BD0-2|SLCO4A1	nc|ENSG00000101187|Q96BD0-2|SLCO4A1	MULTI-MSMS	OvCa99_classI_Rep5	1	467.76422119140625	2	467.765843	933.517133	-0.4776	-0.00022341	-2.4869	-0.0011633	-2.9645	-0.0013867	467.7645952116404	37.962	1.0786	37.962	37.714	38.793	0					52	23	3	0	0	0	0.53957	1	2116	2116		38.806	3.1879	1	2748100			2816	2147	2077	2086	4010	4010					0.04771553183002197
ATPRSKPR	8	Unmodified	_ATPRSKPR_					0	0	0		ENST00000389851.8_2_4:1341111-1341444:+|nuORF	ENST00000389851.8_2_4:1341111-1341444:+|nuORF	ENST00000389851.8_2_4:1341111-1341444:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	456.7725524902344	2	456.772326	911.530098	1.8805	0.00085895	-0.14959	-6.8328E-05	1.7309	0.00079063	456.7712837632454	41.607	1.2326	38.897	38.586	39.818	-2.7097					57	24	4	0	0	0	0.7043	1	2185	2185		42.474	1.6963	1	143280			2817	11200	2078	2087	4011	4011					0.07079429085752054
ATQQPAVPAP	10	Unmodified	_ATQQPAVPAP_					0	0	0		ENSG00000166454|ENST00000299575|ATMIN	ENSG00000166454|ENST00000299575|ATMIN	ENSG00000166454|ENST00000299575|ATMIN	MULTI-SECPEP	OvCa9_classI_Rep2	2	491.25335693359375	2	490.263999	978.513445	-0.9526	-0.00046703	0.89579	0.00043917	-0.056812	-2.7853E-05	490.2643470082693	63.408	1.4712	60.663	60.213	61.685	-2.7444					67	27	4	0	0	0	0.026639	1	4753	4753		35.618	0	1	327590			2818	6683	2079	2088	4012	4012					0.023328834091330464
ATRELGVKIA	10	Unmodified	_ATRELGVKIA_					0	0	0		ENSG00000165669|ENST00000369183|FAM204A	ENSG00000165669|ENST00000369183|FAM204A	ENSG00000165669|ENST00000369183|FAM204A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.2908935546875	2	529.321848	1056.62914	-2.1307	-0.0011279	0.30183	0.00015976	-1.8289	-0.00096809	529.3220977012367	50.591	0.51951	47.417	47.1	47.62	-3.1734					11	9	2	0	0	0	0.026968	1	2908	2908		36.447	19.974	1	18914			2819	6588	2080	2089	4013	4013					0.10309407260001535
ATRGKLLASP	10	Unmodified	_ATRGKLLASP_					0	0	0			REV__nc|ENSG00000163235|P01135-2|TGFA	REV__nc|ENSG00000163235|P01135-2|TGFA	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.3087463378906	2	507.308741	1012.60293	-0.40408	-0.00020499	0.083523	4.2372E-05	-0.32056	-0.00016262	507.30861730397305	48.125	1.6313	45.018	44.287	45.918	-3.1077					79	31	5	0	0	0	0.38315	1	2626	2626		70.816	8.7088	1	675590	+		2820	20819	2081	2090	4014	4014					0.09713138088511641
ATRPPRVSPF	10	Unmodified	_ATRPPRVSPF_					0	0	0			REV__ENST00000519241.5_1_8:58055399-58131978:+|nuORF	REV__ENST00000519241.5_1_8:58055399-58131978:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	564.3226318359375	2	564.31964	1126.62473	3.1763	0.0017924	3.3999	0.0019186	6.5762	0.0037111	564.3213788592631	26.344	0.90757	23.635	23.418	24.326	-2.7097					50	25	3	0	0	0	0.83261	1	349	349		14.865	0.20078	1	124260	+		2821	27040	2082	2091	4015	4015					0.06647942837071241
ATRTRYSL	8	Unmodified	_ATRTRYSL_					0	0	0		ENSG00000162592|ENST00000294600|CCDC27	ENSG00000162592|ENST00000294600|CCDC27	ENSG00000162592|ENST00000294600|CCDC27	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.26898193359375	2	484.269616	966.524678	-1.33	-0.00064407	1.1934	0.00057794	-0.13655	-6.6126E-05	484.2700259003141	50.559	1.5275	47.386	46.995	48.522	-3.1734					51	29	3	0	0	0	0.64026	1	2926	2926		55.504	6.0627	1	524870			2822	6198	2083	2092	4016	4016					0.04007705503283887
ATRTRYSL	8	Unmodified	_ATRTRYSL_					0	0	0		ENSG00000162592|ENST00000294600|CCDC27	ENSG00000162592|ENST00000294600|CCDC27	ENSG00000162592|ENST00000294600|CCDC27	MULTI-MATCH	OvCa99_classI_Rep5	1		2	484.269616	966.524678	-0.17573	-8.5102E-05	-0.029056	-1.4071E-05	-0.20479	-9.9173E-05	484.2695458561815	47.204	0.87348	47.204	46.894	47.768	0	-0.090835	-0.00077035	NaN	55.504	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	658500			2823	6198	2083	2092							0.04007705503283887
ATSACQVQ	8	Unmodified	_ATSACQVQ_					0	0	0		AluSg_dup29696|chr16:69374686-69374983:+|2.3368288603354173|0.0117409257950445|7.64|428.0|14|1|anti-sense	AluSg_dup29696|chr16:69374686-69374983:+|2.3368288603354173|0.0117409257950445|7.64|428.0|14|1|anti-sense	AluSg_dup29696|chr16:69374686-69374983:+|2.3368288603354173|0.0117409257950445|7.64|428.0|14|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	404.185791015625	2	404.186903	806.359253	-4.7754	-0.0019302	0.79078	0.00031962	-3.9847	-0.0016105	404.1871951904172	163.68	0.75046	162.04	161.73	162.48	-1.6336					39	20	2	0	0	0	0.74971	1	16159	16159		26.796	3.7594	1	62332			2824	72	2084	2093	4017	4017					-0.051672693478849396
ATSACQVQ	8	Unmodified	_ATSACQVQ_					0	0	0		AluSg_dup29696|chr16:69374686-69374983:+|2.3368288603354173|0.0117409257950445|7.64|428.0|14|1|anti-sense	AluSg_dup29696|chr16:69374686-69374983:+|2.3368288603354173|0.0117409257950445|7.64|428.0|14|1|anti-sense	AluSg_dup29696|chr16:69374686-69374983:+|2.3368288603354173|0.0117409257950445|7.64|428.0|14|1|anti-sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	404.186903	806.359253	-3.5292	-0.0014265	-0.30639	-0.00012384	-3.8356	-0.0015503	404.18669183087275	162.14	1.1628	161.91	161.38	162.54	-0.22696	-0.066084	-0.00063905	NaN	26.796	39	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32921			2825	72	2084	2093							-0.051672693478849396
ATSAGTLKAVE	11	Unmodified	_ATSAGTLKAVE_					0	0	0			REV__tr|A0A7D6ZGR1|A0A7D6ZGR1_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19995PE=4SV=1	REV__tr|A0A7D6ZGR1|A0A7D6ZGR1_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19995PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	524.2880249023438	2	524.287671	1046.56079	0.32988	0.00017295	0.61113	0.00032041	0.94101	0.00049336	524.2878628443616	44.341	1.6949	41.631	41.303	42.998	-2.7097					85	33	4	0	0	0	0.70142	1	2531	2531		29.17	1.2878	1	482610	+		2826	32005	2085	2094	4018	4018					0.039371178894725745
ATSGKFIGNPK	11	Unmodified	_ATSGKFIGNPK_					0	0	0			REV__ENSG00000146648|ENST00000275493|EGFR	REV__ENSG00000146648|ENST00000275493|EGFR	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.3470458984375	2	560.31148	1118.60841	0.33335	0.00018678	-0.87858	-0.00049228	-0.54523	-0.0003055	560.310867638751	47.389	0.56232	47.389	47.076	47.638	0					19	12	2	0	0	0	0.025759	1	3422	3422		28.081	8.0847	1	205520	+		2827	20025	2086	2095	4019	4019					0.05384816880314247
ATSKLSEKAL	10	Unmodified	_ATSKLSEKAL_					0	0	0			REV__nc|ENSG00000257335|O43451-1|MGAM	REV__nc|ENSG00000257335|O43451-1|MGAM	MULTI-MSMS	OvCa9_classI_Rep2	2	524.3108520507812	2	524.305864	1046.59717	-0.88547	-0.00046426	4.0049	0.0020998	3.1195	0.0016355	524.3077943814858	116.75	1.7338	116.62	116.22	117.96	-0.12869					71	34	4	0	0	0	0.47142	1	11175	11175		58.23	1.5089	1	781710	+		2828	23546	2087	2096	4020	4020					0.07573994786184812
ATSKNYKAAI	10	Unmodified	_ATSKNYKAAI_					0	0	0			REV__tr|A0A553SMW9|A0A553SMW9_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_23325PE=4SV=1	REV__tr|A0A553SMW9|A0A553SMW9_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_23325PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.2378540039062	2	533.798206	1065.58186	2.034	0.0010857	-0.23464	-0.00012525	1.7994	0.00096049	533.7979976183743	92.815	0.91467	92.815	92.472	93.386	0					43	21	3	0	0	0	0.026465	1	10064	10064		72.879	12.585	1	747850	+		2829	30377	2088	2097	4021	4021					0.05169127988983746
ATSPLPRNTIV	11	Unmodified	_ATSPLPRNTIV_					0	0	0			REV__ENSG00000077157|ENST00000608999|PPP1R12B	REV__ENSG00000077157|ENST00000608999|PPP1R12B	MULTI-SECPEP	OvCa9_classI_Rep3	3	584.7825317382812	2	584.837862	1167.66117	-2.4239	-0.0014176	1.861	0.0010884	-0.56291	-0.00032921	584.839135223018	86.225	2.6386	84.004	83.636	86.274	-2.2204					125	51	6	0	0	0	0.023097	1	5113	5113		96.034	28.54	1	1177300	+		2830	17004	2089	2098	4022	4022					0.08404774943119264
ATSPLPRNTIV	11	Unmodified	_ATSPLPRNTIV_					0	0	0			REV__ENSG00000077157|ENST00000608999|PPP1R12B	REV__ENSG00000077157|ENST00000608999|PPP1R12B	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.8388061523438	2	584.837862	1167.66117	0.36689	0.00021457	-2.7826	-0.0016274	-2.4157	-0.0014128	584.8363932127572	86.632	1.5906	84.005	83.663	85.253	-2.6269					87	31	4	0	0	0	0.26821	1	7340	7340		70.816	0.41764	1	899460	+		2831	17004	2089	2098	4023	4023					0.08404774943119264
ATSTPALVPPN	11	Unmodified	_ATSTPALVPPN_					0	0	0			REV__nc|ENSG00000155975|Q8NEZ2-3|VPS37A	REV__nc|ENSG00000155975|Q8NEZ2-3|VPS37A	MULTI-MSMS	OvCa99_classI_Rep5	1	534.2938232421875	2	534.290214	1066.56587	2.4923	0.0013316	3.2252	0.0017232	5.7174	0.0030548	534.2919053796608	86.757	0.86726	86.757	86.511	87.378	0					41	19	4	0	0	0	0.48812	1	9155	9155		54.722	8.7501	1	3098100	+		2832	20455	2090	2099	4024	4024					0.03525421752101465
ATTLPIRNK	9	Unmodified	_ATTLPIRNK_					0	0	0		ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17	ENST00000514252.1_1_4:73978989-74017230:-|nuORF	ENST00000514252.1_1_4:73978989-74017230:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.3082275390625	2	507.308741	1012.60293	-0.91362	-0.00046349	1.0188	0.00051685	0.10519	5.3362E-05	507.30906110170537	47.765	1.1428	45.055	44.737	45.879	-2.7097					43	22	3	0	0	0	0.42676	1	2934	2934		49.442	11.63	1	157500			2833	4139	2091	2100	4025	4025					0.09713138088511641
ATTRALLVTV	10	Unmodified	_ATTRALLVTV_					0	0	0			REV__ENSG00000047644|ENST00000380861|WWC3	REV__ENSG00000047644|ENST00000380861|WWC3	MULTI-MSMS	OvCa9_classI_Rep2	2	522.8240356445312	2	522.824224	1043.63389	0.6555	0.00034271	-1.635	-0.00085481	-0.97949	-0.0005121	522.8233249021611	80.518	1.853	78.823	78.124	79.977	-1.6951					130	36	6	0	0	0	0.49558	1	6802	6802		54.776	3.4409	1	1770100	+		2834	16660	2092	2101	4026	4026					0.1138229140274234
ATTRGQTGLLS	11	Unmodified	_ATTRGQTGLLS_					0	0	0			REV__nc|ENSG00000090534|P40225-2|THPO	REV__nc|ENSG00000090534|P40225-2|THPO	MULTI-MSMS	OvCa9_classI_Rep2	2	552.8030395507812	2	552.80402	1103.59349	1.7488	0.00096675	-2.2986	-0.0012707	-0.54983	-0.00030395	552.8027673574184	41.864	2.1726	39.155	38.881	41.054	-2.7097					165	43	7	0	0	0	0.70032	1	2290	2290		29.551	0.38069	1	3653700	+		2835	28755	2093	2102	4027	4027					0.04583325012322348
ATTTRIIAN	9	Unmodified	_ATTTRIIAN_					0	0	0			REV__ENSG00000162877|ENST00000367136|PM20D1	REV__ENSG00000162877|ENST00000367136|PM20D1	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.787353515625	2	480.777274	959.539994	-0.51889	-0.00024947	-1.1455	-0.00055073	-1.6644	-0.00080021	480.7791162922591	77.681	1.2934	75.892	75.416	76.709	-1.7894					74	24	4	0	0	0	0.027461	1	6436	6436		40.778	3.6191	1	252180	+		2836	20786	2094	2103	4028	4028					0.058605723004689025
ATVAVPLVGK	10	Unmodified	_ATVAVPLVGK_					0	0	0		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-MSMS	OvCa9_classI_Rep3	3	477.8031311035156	2	477.80276	953.590967	-0.48635	-0.00023238	0.40193	0.00019204	-0.084414	-4.0333E-05	477.8028018162573	86.668	1.6684	84.492	83.779	85.447	-2.1768					76	32	4	0	0	0	0.13504	2	5168	5168;5173		104.75	30.492	1	701240			2837	4546	2095	2104	4029;4030	4029					0.11231521345337114
ATVAVPLVGK	10	Unmodified	_ATVAVPLVGK_					0	0	0		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.8028259277344	2	477.80276	953.590967	0.28743	0.00013733	-0.96019	-0.00045878	-0.67276	-0.00032145	477.8021773941678	87.002	1.5445	84.375	83.908	85.453	-2.6269					73	30	4	0	0	0	0.10472	3	7382	7372;7382;7395		112.41	48.204	1	664570			2838	4546	2095	2104	4031;4032;4033	4032					0.11231521345337114
ATVPGLLKV	9	Unmodified	_ATVPGLLKV_					0	0	0		ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	MULTI-MSMS	OvCa9_classI_Rep4_	4	449.2935485839844	2	449.292028	896.569503	0.48817	0.00021933	-0.55866	-0.000251	-0.070487	-3.1669E-05	449.2915987436287	98.51	1.1801	96.131	95.822	97.002	-2.3786					48	22	3	0	0	0	0.14998	1	8760	8760		84.916	21.609	1	245080			2839	7842	2096	2105	4034	4034					0.11708136316622131
ATVPGLLKV	9	Unmodified	_ATVPGLLKV_					0	0	0		ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	MULTI-MATCH	OvCa9_classI_Rep2	2		2	449.292028	896.569503	2.7409	0.0012315	-2.5017	-0.001124	0.23916	0.00010745	449.29074355620884	97.133	1.4251	96.175	95.629	97.054	-0.95856	0.0085131	-0.0010654	NaN	84.916	58	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194960			2840	7842	2096	2105							0.11708136316622131
ATVPGLLKV	9	Unmodified	_ATVPGLLKV_					0	0	0		ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	MULTI-MATCH	OvCa9_classI_Rep3	3		2	449.292028	896.569503	-0.25084	-0.0001127	0.074684	3.3555E-05	-0.17616	-7.9146E-05	449.2918831451224	97.952	1.3648	96.193	95.517	96.882	-1.7595	0.026515	0.0012497	NaN	84.916	51	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243530			2841	7842	2096	2105							0.11708136316622131
ATVRGELI	8	Unmodified	_ATVRGELI_					0	0	0		tr|A0A553SQ88|A0A553SQ88_NIACIBeta-hydroxyacyl-ACPdehydrataseOS=NialliacirculansOX=1397GN=CEQ21_22190PE=3SV=1	tr|A0A553SQ88|A0A553SQ88_NIACIBeta-hydroxyacyl-ACPdehydrataseOS=NialliacirculansOX=1397GN=CEQ21_22190PE=3SV=1	tr|A0A553SQ88|A0A553SQ88_NIACIBeta-hydroxyacyl-ACPdehydrataseOS=NialliacirculansOX=1397GN=CEQ21_22190PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	429.7567138671875	2	429.75581	857.497067	0.41401	0.00017792	-1.1477	-0.00049321	-0.73365	-0.00031529	429.7552163560831	79.291	1.7763	76.54	75.945	77.722	-2.7514					93	36	4	0	0	0	0.57878	1	6449	6449		68.485	4.2774	1	515140			2842	34133	2097	2106	4035	4035					0.06261802243045622
ATVVLKSKFSA	11	Unmodified	_ATVVLKSKFSA_					0	0	0		nc|ENSG00000143554|Q5K4L6-2|SLC27A3;ENSG00000143554|ENST00000624995|SLC27A3;ENST00000468403.1_1_1:153750160-153750403:+|nuORF;ENST00000461269.1_1_1:153749094-153750403:+|nuORF;ENST00000484014.5_1_1:153748462-153751189:+|nuORF	nc|ENSG00000143554|Q5K4L6-2|SLC27A3	nc|ENSG00000143554|Q5K4L6-2|SLC27A3	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8428344726562	2	575.845156	1149.67576	-2.1491	-0.0012375	-1.4619	-0.00084184	-3.611	-0.0020794	575.8441928035448	141.47	4.0925	141.24	139.21	143.3	-0.22696					166	82	3	0	0	0	0.68399	1	14219	14219		35.152	3.6222	1	100260			2843	5072	2098	2107	4036	4036					0.10690847091291289
ATVVLKSKFSA	11	Unmodified	_ATVVLKSKFSA_					0	0	0		nc|ENSG00000143554|Q5K4L6-2|SLC27A3;ENSG00000143554|ENST00000624995|SLC27A3;ENST00000468403.1_1_1:153750160-153750403:+|nuORF;ENST00000461269.1_1_1:153749094-153750403:+|nuORF;ENST00000484014.5_1_1:153748462-153751189:+|nuORF	nc|ENSG00000143554|Q5K4L6-2|SLC27A3	nc|ENSG00000143554|Q5K4L6-2|SLC27A3	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8427124023438	2	575.845156	1149.67576	-2.8608	-0.0016474	-0.58729	-0.00033819	-3.4481	-0.0019856	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.70142	1	14762	14762		29.17	4.9673	1	356230			2844	5072	2098	2107	4037	4037					0.10690847091291289
ATWVQASL	8	Unmodified	_ATWVQASL_					0	0	0		ENST00000399702.5_1_16:2653575-2660570:+|nuORF	ENST00000399702.5_1_16:2653575-2660570:+|nuORF	ENST00000399702.5_1_16:2653575-2660570:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	438.2336730957031	2	438.23471	874.454868	-1.5445	-0.00067686	-2.8145	-0.0012334	-4.359	-0.0019103	438.23330896458424	49.013	1.0397	45.872	45.675	46.715	-3.1416					45	19	3	0	0	0	0.45246	1	2740	2740		82.305	5.4584	1	185910			2845	11398	2099	2108	4038	4038					0.012618268346614059
ATWVQASL	8	Unmodified	_ATWVQASL_					0	0	0		ENST00000399702.5_1_16:2653575-2660570:+|nuORF	ENST00000399702.5_1_16:2653575-2660570:+|nuORF	ENST00000399702.5_1_16:2653575-2660570:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	438.23471	874.454868	-0.03436	-1.5058E-05	-3.9747	-0.0017418	-4.009	-0.0017569	438.23286480482886	48.888	0.9413	46.128	45.779	46.72	-2.7603	0.12796	-0.00075641	NaN	82.305	31	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32037			2846	11398	2099	2108							0.012618268346614059
ATYGKPVHH	9	Unmodified	_ATYGKPVHH_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;nc|ENSG00000174748|P61313-2|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-MSMS	OvCa9_classI_Rep2	2	505.2640686035156	2	505.264333	1008.51411	0.8595	0.00043427	-0.94134	-0.00047563	-0.081844	-4.1353E-05	505.26375901484937	29.367	1.0512	26.658	26.456	27.508	-2.7097					36	21	2	0	0	0	0.38529	1	707	707		53.351	10.955	1	167190			2847	7488	2100	2109	4039	4039					0.01019722848843685
ATYVFLHTV	9	Unmodified	_ATYVFLHTV_					0	0	0		ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	MULTI-MSMS	OvCa9_classI_Rep2	2	525.7844848632812	2	525.784567	1049.55458	-1.2354	-0.00064956	0.61966	0.00032581	-0.61574	-0.00032375	525.784823339703	101.11	1.9306	100.34	100.07	102	-0.76401					87	38	3	0	0	0	0.0025393	7	9262	9251;9256;9262;9267;9273;9280;9287		231.86	121.52	1	2040400			2848	3590	2101	2110	4040;4041;4042;4043;4044;4045;4046	4042					0.031786444485987886
ATYVFLHTV	9	Unmodified	_ATYVFLHTV_					0	0	0		ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	MULTI-MSMS	OvCa9_classI_Rep3	3	525.7843627929688	2	525.784567	1049.55458	-1.2818	-0.00067396	1.0828	0.0005693	-0.19906	-0.00010466	525.7850370836175	101.92	2.1473	100.4	99.951	102.1	-1.5211					119	40	5	0	0	0	0.006445	11	6982	6972;6977;6982;6988;6994;7001;7008;7014;7020;7028;7034		224.43	126.95	1	2531800			2849	3590	2101	2110	4047;4048;4049;4050;4051;4052;4053;4054;4055;4056;4057	4049					0.031786444485987886
ATYVFLHTV	9	Unmodified	_ATYVFLHTV_					0	0	0		ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.7844848632812	2	525.784567	1049.55458	-0.6945	-0.00036516	0.53849	0.00028313	-0.15601	-8.2029E-05	525.7847730621967	102.54	2.1485	100.34	99.937	102.09	-2.1994					112	40	5	0	0	0	0.0025393	6	9236	9225;9236;9248;9261;9273;9286		231.86	121.52	1	2202600			2850	3590	2101	2110	4058;4059;4060;4061;4062;4063	4059					0.031786444485987886
AVAAPEPSEP	10	Unmodified	_AVAAPEPSEP_					0	0	0			REV__ENSG00000169221|ENST00000409939|TBC1D10B	REV__ENSG00000169221|ENST00000409939|TBC1D10B	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.22802734375	2	484.24019	966.465826	-0.41389	-0.00020042	3.0838	0.0014933	2.6699	0.0012929	484.24172846285154	48.3	1.2636	48.3	47.812	49.075	0					38	28	2	0	0	0	0.026871	1	3527	3527		37.159	1.5408	1	148130	+		2851	21445	2102	2111	4064	4064					-0.018748155817092993
AVAERRKHP	9	Unmodified	_AVAERRKHP_					0	0	0			REV__ENST00000438568.6_1_1:150479567-150479729:+|nuORF	REV__ENST00000438568.6_1_1:150479567-150479729:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.7844848632812	2	532.309606	1062.60466	-1.7184	-0.0009147	3.8805	0.0020656	2.1621	0.0011509	532.311490566265	70.388	0.97073	66.906	66.49	67.461	-3.4812					30	19	2	0	0	0	0.027441	1	5309	5309		37.159	2.9866	1	93950	+		2852	25813	2103	2112	4065	4065					0.07586191897121353
AVAERRKHP	9	Unmodified	_AVAERRKHP_					0	0	0			REV__ENST00000438568.6_1_1:150479567-150479729:+|nuORF	REV__ENST00000438568.6_1_1:150479567-150479729:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	532.309606	1062.60466	-1.5427	-0.00082117	3.1916	0.0016989	1.6489	0.00087775	532.3112565261156	69.33	1.0958	66.71	66.266	67.362	-2.6203	-0.098202	-0.00011836	NaN	37.159	39	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83984	+		2853	25813	2103	2112							0.07586191897121353
AVAGGITATL	10	Unmodified	_AVAGGITATL_					0	0	0			REV__nc|ENSG00000173171|Q13505-2|MTX1	REV__nc|ENSG00000173171|Q13505-2|MTX1	MULTI-SECPEP	OvCa99_classI_Rep5	1	437.2953186035156	2	437.255643	872.496732	3.4598	0.0015128	-0.33752	-0.00014758	3.1223	0.0013652	437.2553618254015	75.388	0.39547	75.388	75.168	75.563	0					14	9	2	0	0	0	0.026752	1	7481	7481		44.117	34.411	1	370180	+		2854	21753	2104	2113	4066	4066					0.05538382523195651
AVAGGITATL	10	Unmodified	_AVAGGITATL_					0	0	0			REV__nc|ENSG00000173171|Q13505-2|MTX1	REV__nc|ENSG00000173171|Q13505-2|MTX1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	437.255643	872.496732	0.33299	0.0001456	0.089447	3.9111E-05	0.42244	0.00018471	437.25544619612407	78.379	0.70502	75.563	75.409	76.114	-2.8165	0.087371	0.00015054	NaN	44.117	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64672	+		2855	21753	2104	2113							0.05538382523195651
AVAGVDPALL	10	Unmodified	_AVAGVDPALL_					0	0	0		ENST00000490764.5_1_2:234327938-234366271:+|nuORF	ENST00000490764.5_1_2:234327938-234366271:+|nuORF	ENST00000490764.5_1_2:234327938-234366271:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.29498291015625	2	463.271293	924.528032	-0.81886	-0.00037936	1.6644	0.00077108	0.84555	0.00039172	463.27175367106236	106	1.0704	103.98	103.65	104.72	-2.0161					36	20	3	0	0	0	0.026519	1	9690	9690		37.159	0	1	36942			2856	12704	2105	2114	4067	4067					0.06274955557273643
AVAIKAMAK	9	Oxidation (M)	_AVAIKAM(Oxidation (M))AK_		AVAIKAM(1)AK		AVAIKAM(53)AK	0	0	1		ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A;ENSG00000253626|ENST00000520547|EIF5AL1;chr17:7311122-7311612|144|234.01|0.16|10.53|+|2|EIF5A,None|2	ENSG00000132507|ENST00000336458|EIF5A	ENSG00000132507|ENST00000336458|EIF5A	MULTI-MSMS	OvCa9_classI_Rep2	2	459.77532958984375	2	459.775688	917.536823	-2.4241	-0.0011145	2.1864	0.0010053	-0.23766	-0.00010927	459.77660984110486	36.567	1.1832	33.858	33.647	34.83	-2.7097					59	23	4	0	0	0	0.38529	2	1582	1565;1582		53.351	7.3995	1	232640			2857	4143	2106	2115	4068;4069	4069		132			0.07475605922115847
AVALAGTTSGA	11	Unmodified	_AVALAGTTSGA_					0	0	0			REV__ENSG00000175567|ENST00000663595|UCP2	REV__ENSG00000175567|ENST00000663595|UCP2	MULTI-SECPEP	OvCa9_classI_Rep2	2	459.77520751953125	2	459.748182	917.481811	-2.4185	-0.0011119	4.1417	0.0019041	1.7232	0.00079225	459.74994540539416	36.687	0.54204	33.978	33.795	34.337	-2.7097					15	10	2	0	0	0	0.025377	1	1576	1576		66.429	21.898	1	29321	+		2858	21905	2107	2116	4070	4070					0.01976890655180341
AVALPLQTK	9	Unmodified	_AVALPLQTK_					0	0	0		ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1;ENST00000512719.5_1_4:155467261-155471460:-|nuORF	ENSG00000171566|ENST00000499023|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	MULTI-MSMS	OvCa9_classI_Rep3	3	470.7967834472656	2	470.794935	939.575317	0.721	0.00033944	-1.1739	-0.00055269	-0.45295	-0.00021325	470.79432724081363	79.671	2.137	77.331	76.802	78.939	-2.3399					94	41	5	0	0	0	0.12515	4	4309	4305;4309;4314;4320		90.37	25.25	1	1458600			2859	7214	2108	2117	4071;4072;4073;4074	4072					0.10311234828282068
AVALPLQTK	9	Unmodified	_AVALPLQTK_					0	0	0		ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1;ENST00000512719.5_1_4:155467261-155471460:-|nuORF	ENSG00000171566|ENST00000499023|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.7959899902344	2	470.794935	939.575317	-0.080631	-3.7961E-05	-0.4788	-0.00022542	-0.55943	-0.00026338	470.7946553269519	80.301	1.9102	77.59	77.123	79.033	-2.7106					99	38	4	0	0	0	0.2422	1	6560	6560		69.628	3.1983	1	2410000			2860	7214	2108	2117	4075	4075					0.10311234828282068
AVAPVGAPKV	10	Unmodified	_AVAPVGAPKV_					0	0	0		KRTAP5-10|p.K111Wfs*116|1|0.04|ENSG00000204572|chr11:71565889-71565890|-/GGGAGGCTGTGGCTCCTGTGGGGGCTCCT|frameshift_variant	KRTAP5-10|p.K111Wfs*116|1|0.04|ENSG00000204572|chr11:71565889-71565890|-/GGGAGGCTGTGGCTCCTGTGGGGGCTCCT|frameshift_variant	KRTAP5-10|p.K111Wfs*116|1|0.04|ENSG00000204572|chr11:71565889-71565890|-/GGGAGGCTGTGGCTCCTGTGGGGGCTCCT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	454.7834777832031	2	454.781828	907.549102	-1.0047	-0.0004569	1.2024	0.00054683	0.19774	8.9927E-05	454.78225300576077	70.023	0.81657	70.023	69.672	70.488	0					45	19	4	0	0	0	0.23802	2	6682	6682;6710		88.643	20.158	1	3735300			2861	14529	2109	2118	4076;4077	4076					0.0916296565679886
AVARGAPAL	9	Unmodified	_AVARGAPAL_					0	0	0		ENSG00000162576|ENST00000309212|MXRA8;nc|ENSG00000162576|Q9BRK3-4|MXRA8;nc|ENSG00000162576|Q9BRK3-3|MXRA8;nc|ENSG00000162576|Q9BRK3-2|MXRA8	ENSG00000162576|ENST00000309212|MXRA8	ENSG00000162576|ENST00000309212|MXRA8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	413.7621765136719	2	413.250695	824.486836	0.031611	1.3063E-05	-0.035404	-1.4631E-05	-0.0037932	-1.5675E-06	413.25047799325256	74.305	0.95636	71.074	70.769	71.726	-3.2308					38	19	3	0	0	0	0.027462	1	5824	5824		42.474	18.272	1	195940			2862	6195	2110	2119	4078	4078					0.06757239308467433
AVARGAPAL	9	Unmodified	_AVARGAPAL_					0	0	0		ENSG00000162576|ENST00000309212|MXRA8;nc|ENSG00000162576|Q9BRK3-4|MXRA8;nc|ENSG00000162576|Q9BRK3-3|MXRA8;nc|ENSG00000162576|Q9BRK3-2|MXRA8	ENSG00000162576|ENST00000309212|MXRA8	ENSG00000162576|ENST00000309212|MXRA8	MULTI-MATCH	OvCa9_classI_Rep2	2		2	413.250695	824.486836	0.66034	0.00027288	-0.57826	-0.00023897	0.082078	3.3919E-05	413.2503815041766	73.169	1.2028	70.769	70.272	71.475	-2.3999	-0.15274	-0.00010407	NaN	42.474	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52657			2863	6195	2110	2119							0.06757239308467433
AVASFPKKQE	10	Unmodified	_AVASFPKKQE_					0	0	0		ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	MULTI-MSMS	OvCa99_classI_Rep5	1	552.8055419921875	2	552.806031	1103.59751	-0.77938	-0.00043085	-0.17079	-9.4414E-05	-0.95017	-0.00052526	552.8058820436016	39.843	1.3399	39.843	39.63	40.969	0					74	29	5	0	0	0	0.025401	2	2386	2362;2386		141.52	34.513	1	15755000			2864	2919	2111	2120	4079;4080	4080					0.04985414506040797
AVASQTGKVV	10	Unmodified	_AVASQTGKVV_					0	0	0			REV__tr|A0A7D6ZPZ2|A0A7D6ZPZ2_9CLOTDUF348domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22440PE=4SV=1	REV__tr|A0A7D6ZPZ2|A0A7D6ZPZ2_9CLOTDUF348domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22440PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.2481384277344	2	480.279649	958.544745	0.15437	7.4141E-05	-1.6489	-0.00079192	-1.4945	-0.00071778	480.2787026953536	48.071	0.40499	44.963	44.736	45.141	-3.1077					13	7	3	0	0	0	0.026871	1	2615	2615		37.159	9.2769	1	71639	+		2865	32143	2112	2121	4081	4081					0.06381456443239131
AVASSAVLVIK	11	Unmodified	_AVASSAVLVIK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.P12974Lfs*4|1|0.05|ENSG00000155657|chr2:178631204-178631205|-/GTACA|frameshift_variant;TTN|p.E11597Rfs*5|1|0.5|ENSG00000155657|chr2:178651954-178651954|A/-|frameshift_variant;TTN|p.R11195Efs*5|1|0.15|ENSG00000155657|chr2:178674318-178674318|A/-|frameshift_variant;TTN|p.E9011Nfs*14|1|0.03|ENSG00000155657|chr2:178711255-178711255|T/-|frameshift_variant;TTN|p.G8550Tfs*3|1|0.05|ENSG00000155657|chr2:178714032-178714059|ATTTGTTGTCACTTGTTAGCTCTTTTCC/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OvCa9_classI_Rep2	2	529.332763671875	2	529.334424	1056.6543	-1.2215	-0.00064657	2.8876	0.0015285	1.6661	0.00088191	529.3357853309486	57.37	1.1974	54.578	54.328	55.525	-2.792					51	23	4	0	0	0	0.50928	1	4091	4091		52.937	6.9645	1	155790			2866	5793;36288	2113	2122	4082	4082					0.12823462062556246
AVASSAVLVIK	11	Unmodified	_AVASSAVLVIK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.P12974Lfs*4|1|0.05|ENSG00000155657|chr2:178631204-178631205|-/GTACA|frameshift_variant;TTN|p.E11597Rfs*5|1|0.5|ENSG00000155657|chr2:178651954-178651954|A/-|frameshift_variant;TTN|p.R11195Efs*5|1|0.15|ENSG00000155657|chr2:178674318-178674318|A/-|frameshift_variant;TTN|p.E9011Nfs*14|1|0.03|ENSG00000155657|chr2:178711255-178711255|T/-|frameshift_variant;TTN|p.G8550Tfs*3|1|0.05|ENSG00000155657|chr2:178714032-178714059|ATTTGTTGTCACTTGTTAGCTCTTTTCC/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OvCa9_classI_Rep3	3	529.3346557617188	2	529.334424	1056.6543	-0.78507	-0.00041556	0.69231	0.00036647	-0.092757	-4.9099E-05	529.334653037835	97.296	1.0571	95.537	95.053	96.11	-1.7595					50	20	3	0	0	0	0.64273	1	6440	6440		40.778	1.5253	1	247210			2867	5793;36288	2113	2122	4083	4083					0.12823462062556246
AVAVSYAF	8	Unmodified	_AVAVSYAF_					0	0	0		ENSG00000196341|ENST00000641015|OR8D1	ENSG00000196341|ENST00000641015|OR8D1	ENSG00000196341|ENST00000641015|OR8D1	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.7699279785156	2	414.218529	826.422505	0.15551	6.4414E-05	4.0411	0.0016739	4.1966	0.0017383	414.2226170599756	61.488	0.41435	61.488	61.289	61.704	0					18	9	3	0	0	0	0.028476	1	5454	5454		16.705	0	1	156020			2868	8591	2114	2123	4084	4084					0.002350394316636084
AVAYHGLAL	9	Unmodified	_AVAYHGLAL_					0	0	0			REV__ENSG00000185758|ENST00000541814|CLDN24	REV__ENSG00000185758|ENST00000541814|CLDN24	MULTI-MSMS	OvCa99_classI_Rep5	1	458.2606506347656	2	457.758352	913.502152	0.28898	0.00013228	-1.4528	-0.00066501	-1.1638	-0.00053273	457.75646808202	67.388	0.93953	67.388	66.977	67.916	0					64	23	4	0	0	0	0.32242	1	6301	6301		60.404	10.379	1	5450700	+		2869	22527	2115	2124	4085	4085					0.04194106105649098
AVCCAMGAP	9	Unmodified	_AVCCAMGAP_					0	0	0		OTOF|p.Y1215Mfs*57|1|0.35|ENSG00000115155|chr2:26473222-26473223|-/CTCAT|frameshift_variant	OTOF|p.Y1215Mfs*57|1|0.35|ENSG00000115155|chr2:26473222-26473223|-/CTCAT|frameshift_variant	OTOF|p.Y1215Mfs*57|1|0.35|ENSG00000115155|chr2:26473222-26473223|-/CTCAT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	411.6662902832031	2	411.668977	821.323401	-5.8322	-0.0024009	2.0824	0.00085727	-3.7497	-0.0015436	411.6698486035822	163.63	0.75046	162	161.73	162.48	-1.6336					34	20	2	0	0	0	0.68641	1	16198	16198		21.702	1.2205	1	29045			2870	15469	2116	2125	4086	4086					-0.09440766120746957
AVCFVIMYSI	10	Unmodified	_AVCFVIMYSI_					0	0	0		tr|A0A7D6ZGC5|A0A7D6ZGC5_9CLOTStageIIsporulationproteinEOS=ClostridiumintestinaleOX=36845GN=spoIIEPE=4SV=1	tr|A0A7D6ZGC5|A0A7D6ZGC5_9CLOTStageIIsporulationproteinEOS=ClostridiumintestinaleOX=36845GN=spoIIEPE=4SV=1	tr|A0A7D6ZGC5|A0A7D6ZGC5_9CLOTStageIIsporulationproteinEOS=ClostridiumintestinaleOX=36845GN=spoIIEPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	573.29052734375	2	573.290314	1144.56607	0.8407	0.00048197	0.91575	0.00052499	1.7565	0.001007	573.2906276182567	156.63	1.7634	156.63	156.09	157.85	0					68	34	3	0	0	0	0.56767	1	18353	18353		45.952	3.4775	1	149720			2871	35541	2117	2126	4087	4087					-0.00042617843905645714
AVCSRAAAAP	10	Unmodified	_AVCSRAAAAP_					0	0	0		ENST00000341511.10_1_9:139913472-139913642:-|nuORF	ENST00000341511.10_1_9:139913472-139913642:-|nuORF	ENST00000341511.10_1_9:139913472-139913642:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	457.7518615722656	2	458.737094	915.459635	-1.2728	-0.00058386	0.87463	0.00040122	-0.39814	-0.00018264	458.7372831980163	48.732	1.3483	45.624	45.296	46.644	-3.1077					46	25	3	0	0	0	0.026635	1	2678	2678		47.657	15.702	1	204640			2872	10567	2118	2127	4088	4088					-0.001476122942335678
AVCSRAAAAP	10	Unmodified	_AVCSRAAAAP_					0	0	0		ENST00000341511.10_1_9:139913472-139913642:-|nuORF	ENST00000341511.10_1_9:139913472-139913642:-|nuORF	ENST00000341511.10_1_9:139913472-139913642:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	458.737094	915.459635	-0.22318	-0.00010238	-0.60243	-0.00027636	-0.82561	-0.00037874	458.7365173735348	48.579	0.69851	45.819	45.528	46.226	-2.7603	0.097227	-0.00084675	NaN	47.657	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27206			2873	10567	2118	2127							-0.001476122942335678
AVDAWAPLSHA	11	Unmodified	_AVDAWAPLSHA_					0	0	0			REV__ENST00000483303.1_1_22:42912068-42915792:-|nuORF	REV__ENST00000483303.1_1_22:42912068-42915792:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	569.290283203125	2	569.288005	1136.56146	1.8964	0.0010796	-0.44867	-0.00025542	1.4477	0.00082415	569.2873877468398	134.51	0.52188	134.51	134.29	134.81	0					24	11	3	0	0	0	0.56722	1	15677	15677		47.657	2.6351	1	863860	+		2874	26522	2119	2128	4089	4089					-0.0013604267080609134
AVDTISYGEF	10	Unmodified	_AVDTISYGEF_					0	0	0		ENSG00000158109|ENST00000378344|TPRG1L	ENSG00000158109|ENST00000378344|TPRG1L	ENSG00000158109|ENST00000378344|TPRG1L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.2913208007812	2	551.258579	1100.50261	-0.93704	-0.00051655	3.856	0.0021256	2.9189	0.0016091	551.260730463152	65.81	0.53484	62.324	62.082	62.617	-3.4854					18	10	2	0	0	0	0.026802	1	4748	4748		34.173	3.6689	1	35114			2875	5932	2120	2129	4090	4090					-0.043625637557852315
AVDYNPRDNLL	11	Unmodified	_AVDYNPRDNLL_					0	0	0		ENSG00000150471|ENST00000683033|ADGRL3;nc|ENSG00000150471|Q9HAR2-2|ADGRL3;nc|ENSG00000150471|Q9HAR2|ADGRL3;nc|ENSG00000150471|Q9HAR2-4|ADGRL3;nc|ENSG00000150471|Q9HAR2-3|ADGRL3	ENSG00000150471|ENST00000683033|ADGRL3	ENSG00000150471|ENST00000683033|ADGRL3	MULTI-MSMS	OvCa9_classI_Rep2	2	645.3246459960938	2	645.327859	1288.64116	-1.4341	-0.00092546	-0.9997	-0.00064514	-2.4338	-0.0015706	645.327117611008	98.778	3.0684	97.885	96.974	100.04	-0.89305					168	61	4	0	0	0	0.7046	1	9018	9018		28.081	2.5074	1	979390			2876	5508	2121	2130	4091	4091					0.008389792125399254
AVFGTMQM	8	2 Oxidation (M)	_AVFGTM(Oxidation (M))QM(Oxidation (M))_		AVFGTM(1)QM(1)		AVFGTM(74)QM(74)	0	0	2		DGKD|p.S880T|1|0.26|ENSG00000077044|chr2:233458342-233458342|G/C|missense_variant	DGKD|p.S880T|1|0.26|ENSG00000077044|chr2:233458342-233458342|G/C|missense_variant	DGKD|p.S880T|1|0.26|ENSG00000077044|chr2:233458342-233458342|G/C|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	458.6999816894531	2	458.698789	915.383024	2.4952	0.0011445	-0.059095	-2.7107E-05	2.4361	0.0011174	458.6987453430594	94.864	0.63922	94.864	94.604	95.244	0					38	14	4	0	0	0	0.53531	1	10337	10337		73.975	13.681	1	2011700			2877	731	2122	2131	4092	4092		21;22			-0.07805171905715724
AVFGTMQM	8	2 Oxidation (M)	_AVFGTM(Oxidation (M))QM(Oxidation (M))_					0	0	2		DGKD|p.S880T|1|0.26|ENSG00000077044|chr2:233458342-233458342|G/C|missense_variant	DGKD|p.S880T|1|0.26|ENSG00000077044|chr2:233458342-233458342|G/C|missense_variant	DGKD|p.S880T|1|0.26|ENSG00000077044|chr2:233458342-233458342|G/C|missense_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	458.698789	915.383024	1.0892	0.00049963	-0.069768	-3.2002E-05	1.0195	0.00046763	458.6985389114426	96.978	0.29359	94.552	94.468	94.761	-2.4256	-0.15595	-8.093E-06	NaN	73.975	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9136.6			2878	731	2122	2131				21;22			-0.07805171905715724
AVFRAITI	8	Unmodified	_AVFRAITI_					0	0	0		ENSG00000113657|ENST00000343218|DPYSL3;nc|ENSG00000113657|Q14195|DPYSL3;ATP8A1-CRMP1|1|fusion;ENST00000511535.1_1_4:5823489-5889136:-|nuORF;nc|ENSG00000072832|Q14194|CRMP1;ENST00000506216.5_1_4:5749932-5890196:-|nuORF;ENSG00000072832|ENST00000324989|CRMP1	ENSG00000113657|ENST00000343218|DPYSL3	ENSG00000113657|ENST00000343218|DPYSL3	MULTI-MSMS	OvCa99_classI_Rep5	1	445.7781066894531	2	445.776545	889.538538	3.6207	0.001614	-0.86544	-0.00038579	2.7552	0.0012282	445.7760221209224	99.057	0.76273	99.057	98.725	99.488	0					49	18	4	0	0	0	0.22496	2	10951	10922;10951		120.62	21.453	1	4699300			2879	2989	2123	2132	4093;4094	4094					0.089349830023707
AVGDPCPAEL	10	Carbamidomethyl (C)	_AVGDPC(Carbamidomethyl (C))PAEL_	AVGDPC(1)PAEL		AVGDPC(51)PAEL		0	1	0			REV__ENST00000500447.1_1_11:567401-567488:-|nuORF	REV__ENST00000500447.1_1_11:567401-567488:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	514.7413330078125	2	514.739499	1027.46445	1.9439	0.0010006	0.23912	0.00012308	2.183	0.0011237	514.7394934186163	85.745	0.84846	85.745	85.422	86.271	0					45	20	3	0	0	0	0.52321	1	9020	9020		51.335	10.763	1	1237700	+		2880	26813	2124	2133	4095	4095	330				-0.04818772942144278
AVGDPCPAEL	10	Carbamidomethyl (C)	_AVGDPC(Carbamidomethyl (C))PAEL_					0	1	0			REV__ENST00000500447.1_1_11:567401-567488:-|nuORF	REV__ENST00000500447.1_1_11:567401-567488:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	514.739499	1027.46445	1.9439	0.0010006	0.23912	0.00012308	2.183	0.0011237	514.7394934186163	85.745	0.84846	85.745	85.422	86.271	0	0	0	NaN	51.335	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1237700	+		2881	26813	2124	2133			330				-0.04818772942144278
AVGGRLRLVP	10	Unmodified	_AVGGRLRLVP_					0	0	0		nc|ENSG00000103253|Q6PII5-3|HAGHL;nc|ENSG00000103253|Q6PII5-4|HAGHL	nc|ENSG00000103253|Q6PII5-3|HAGHL	nc|ENSG00000103253|Q6PII5-3|HAGHL	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.3331909179688	2	519.33255	1036.65055	-1.4968	-0.00077735	0.48065	0.00024962	-1.0162	-0.00052774	519.3327101057663	72.19	1.1192	68.733	68.46	69.579	-3.4563					58	22	4	0	0	0	0.72319	1	5535	5535		27.882	1.0861	1	1009300			2882	14936	2125	2134	4096	4096					0.13368837079337936
AVGKQYKVV	9	Unmodified	_AVGKQYKVV_					0	0	0			REV__tr|A0A553SP11|A0A553SP11_NIACIflagellarbiosynthesisproteinFlhFOS=NialliacirculansOX=1397GN=flhFPE=3SV=1	REV__tr|A0A553SP11|A0A553SP11_NIACIflagellarbiosynthesisproteinFlhFOS=NialliacirculansOX=1397GN=flhFPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	496.29998779296875	2	496.300384	990.586216	1.2461	0.00061845	-1.3256	-0.00065787	-0.079436	-3.9424E-05	496.29955522437075	123.03	1.3483	121.99	121.68	123.03	-1.0377					64	25	3	0	0	0	0.52083	1	9497	9497		40.573	3.4135	1	228980	+		2883	30476	2126	2135	4097	4097					0.0905463720255284
AVGPHLTAK	9	Unmodified	_AVGPHLTAK_					0	0	0		ENSG00000185361|ENST00000327473|TNFAIP8L1	ENSG00000185361|ENST00000327473|TNFAIP8L1	ENSG00000185361|ENST00000327473|TNFAIP8L1	MULTI-MSMS	OvCa9_classI_Rep4_	4	447.263427734375	2	447.263802	892.513051	-0.7678	-0.00034341	1.5238	0.00068156	0.75605	0.00033815	447.26405245971193	43.463	1.7415	40.455	39.853	41.595	-3.0074					64	33	4	0	0	0	0.13482	1	2087	2087		87.754	21.951	1	428590			2884	8250	2127	2136	4098	4098					0.06249508479936594
AVGPHLTAK	9	Unmodified	_AVGPHLTAK_					0	0	0		ENSG00000185361|ENST00000327473|TNFAIP8L1	ENSG00000185361|ENST00000327473|TNFAIP8L1	ENSG00000185361|ENST00000327473|TNFAIP8L1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	447.263802	892.513051	0.34547	0.00015451	-0.60793	-0.0002719	-0.26246	-0.00011739	447.2636165123013	40.72	0.48797	40.72	40.526	41.014	0	0.16536	-0.00012027	NaN	87.754	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59851			2885	8250	2127	2136							0.06249508479936594
AVGPHLTAK	9	Unmodified	_AVGPHLTAK_					0	0	0		ENSG00000185361|ENST00000327473|TNFAIP8L1	ENSG00000185361|ENST00000327473|TNFAIP8L1	ENSG00000185361|ENST00000327473|TNFAIP8L1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	447.263802	892.513051	2.8992	0.0012967	-2.5952	-0.0011607	0.30397	0.00013595	447.262506039218	43.199	1.1873	40.489	39.966	41.153	-2.7097	-0.065664	-0.0018979	NaN	87.754	47	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77734			2886	8250	2127	2136							0.06249508479936594
AVHNVPLSV	9	Unmodified	_AVHNVPLSV_					0	0	0		ENSG00000271303|ENST00000381962|SRXN1	ENSG00000271303|ENST00000381962|SRXN1	ENSG00000271303|ENST00000381962|SRXN1	MULTI-MSMS	OvCa99_classI_Rep5	1	468.2706604003906	2	468.269084	934.523616	2.0129	0.00094258	0.11593	5.4287E-05	2.1288	0.00099686	468.26902048399427	74.857	0.69589	74.857	74.596	75.292	0					38	16	3	0	0	0	0.12365	1	7422	7422		90.777	29.805	1	4056600			2887	9547	2128	2137	4099	4099					0.05373491134366759
AVIGADSVTLK	11	Unmodified	_AVIGADSVTLK_					0	0	0		ENST00000477860.1_1_17:30200326-30200766:-|nuORF;ENSG00000108651|ENST00000261708|UTP6	ENST00000477860.1_1_17:30200326-30200766:-|nuORF	ENST00000477860.1_1_17:30200326-30200766:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.314208984375	2	537.313689	1072.61282	-1.3013	-0.00069922	0.17892	9.6139E-05	-1.1224	-0.00060308	537.3137426630148	82.593	1.025	79.91	79.635	80.66	-2.6829					49	20	3	0	0	0	0.54114	1	6839	6839		50.034	3.5767	1	284340			2888	2670	2129	2138	4100	4100					0.07942281303235177
AVIGADSVTLK	11	Unmodified	_AVIGADSVTLK_					0	0	0		ENST00000477860.1_1_17:30200326-30200766:-|nuORF;ENSG00000108651|ENST00000261708|UTP6	ENST00000477860.1_1_17:30200326-30200766:-|nuORF	ENST00000477860.1_1_17:30200326-30200766:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	537.313689	1072.61282	-0.37699	-0.00020256	0.218	0.00011714	-0.15899	-8.5426E-05	537.3137496477377	81.916	0.98344	80.268	79.716	80.7	-1.6485	0.22072	0.00040278	NaN	50.034	49	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98668			2889	2670	2129	2138							0.07942281303235177
AVIGADSVTLK	11	Unmodified	_AVIGADSVTLK_					0	0	0		ENST00000477860.1_1_17:30200326-30200766:-|nuORF;ENSG00000108651|ENST00000261708|UTP6	ENST00000477860.1_1_17:30200326-30200766:-|nuORF	ENST00000477860.1_1_17:30200326-30200766:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	537.313689	1072.61282	0.23447	0.00012598	-0.4995	-0.00026839	-0.26503	-0.0001424	537.3132710815951	82.26	1.1975	79.963	79.684	80.882	-2.2963	-0.083674	-0.00036827	NaN	50.034	71	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	359330			2890	2670	2129	2138							0.07942281303235177
AVILKDSKVF	10	Unmodified	_AVILKDSKVF_					0	0	0		ENSG00000105928|ENST00000645220|GSDME;nc|ENSG00000105928|O60443-3|GSDME;nc|ENSG00000105928|O60443-2|GSDME	ENSG00000105928|ENST00000645220|GSDME	ENSG00000105928|ENST00000645220|GSDME	MULTI-MSMS	OvCa9_classI_Rep2	2	560.3408813476562	2	560.342249	1118.66995	-4.5115	-0.002528	1.2493	0.00070003	-3.2622	-0.001828	560.3427660344651	160.69	1.3876	160.47	160.23	161.62	-0.22697					59	27	4	0	0	0	0.79917	1	16360	16360		19.104	2.6304	1	170910			2891	2512	2130	2139	4101	4101					0.11535748579603933
AVIRLIAL	8	Unmodified	_AVIRLIAL_					0	0	0			REV__tr|A0A553SMJ2|A0A553SMJ2_NIACIIntegralmembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_22575PE=4SV=1	REV__tr|A0A553SMJ2|A0A553SMJ2_NIACIIntegralmembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_22575PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	434.28759765625	2	434.802563	867.590573	-0.91537	-0.00039801	-0.75312	-0.00032746	-1.6685	-0.00072546	434.80210622660684	84.486	0.56828	82.94	82.535	83.104	-1.5462					14	10	2	0	0	0	0.028476	1	7293	7293		52.299	7.7681	1	18917	+		2892	30336	2131	2140	4102	4102					0.15148146416129293
AVISIQVLDV	10	Unmodified	_AVISIQVLDV_					0	0	0		ENSG00000197410|ENST00000357232|DCHS2	ENSG00000197410|ENST00000357232|DCHS2	ENSG00000197410|ENST00000357232|DCHS2	MULTI-MSMS	OvCa9_classI_Rep2	2	528.81787109375	2	528.818607	1055.62266	-1.152	-0.00060918	1.1681	0.00061773	0.016157	8.544E-06	528.8190456843956	137.71	0.85484	137.48	137.27	138.13	-0.22697					33	17	3	0	0	0	0.61634	1	13709	13709		40.058	3.6114	1	54481			2893	8709	2132	2141	4103	4103					0.09707469308591499
AVKGWNVLV	9	Unmodified	_AVKGWNVLV_					0	0	0			REV__ENST00000566611.5_1_16:57786453-57787143:+|nuORF	REV__ENST00000566611.5_1_16:57786453-57787143:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.2956848144531	2	493.295102	984.575651	0.83945	0.00041409	-1.1857	-0.00058488	-0.34621	-0.00017078	493.29448069995703	114.31	1.3923	112.86	112.58	113.97	-1.4461					50	26	3	0	0	0	0.53957	1	10613	10613		38.806	5.9937	1	167670	+		2894	27704	2133	2142	4104	4104					0.08274654548131366
AVKGWNVLV	9	Unmodified	_AVKGWNVLV_					0	0	0			REV__ENST00000566611.5_1_16:57786453-57787143:+|nuORF	REV__ENST00000566611.5_1_16:57786453-57787143:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	493.295102	984.575651	1.1316	0.00055823	-1.039	-0.00051252	0.092662	4.571E-05	493.2946493290204	112.9	1.5797	112.78	112.18	113.76	-0.12174	-0.053961	6.0754E-05	NaN	38.806	58	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134140	+		2895	27704	2133	2142							0.08274654548131366
AVKGWNVLV	9	Unmodified	_AVKGWNVLV_					0	0	0			REV__ENST00000566611.5_1_16:57786453-57787143:+|nuORF	REV__ENST00000566611.5_1_16:57786453-57787143:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	493.295102	984.575651	0.12525	6.1785E-05	2.0133	0.00099317	2.1386	0.0010549	493.2967063331603	113.91	1.4681	112.85	112.53	114	-1.055	0.023198	0.0030721	NaN	38.806	60	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145540	+		2896	27704	2133	2142							0.08274654548131366
AVKKKWKP	8	Unmodified	_AVKKKWKP_					0	0	0			REV__ENSG00000174529|ENST00000367167|TMEM81	REV__ENSG00000174529|ENST00000367167|TMEM81	MULTI-MSMS	OvCa9_classI_Rep2	2	492.81890869140625	2	492.821287	983.628021	-1.0524	-0.00051866	-3.4725	-0.0017113	-4.5249	-0.00223	492.81937696825383	61.985	2.6287	59.225	58.882	61.511	-2.7593					139	50	4	0	0	0	0.69415	1	4656	4656		44.531	5.2782	1	798600	+		2897	21841	2134	2143	4105	4105					0.13555237681748622
AVKPKAAKPK	10	Unmodified	_AVKPKAAKPK_					0	0	0		ENSG00000168298|ENST00000304218|H1-4;ENSG00000184357|ENST00000331442|H1-5;ENSG00000187837|ENST00000343677|H1-2	ENSG00000168298|ENST00000304218|H1-4;ENSG00000184357|ENST00000331442|H1-5;ENSG00000187837|ENST00000343677|H1-2	ENSG00000168298|ENST00000304218|H1-4	MULTI-MSMS	OvCa9_classI_Rep2	2	519.3447875976562	2	519.345126	1036.6757	3.6258	0.001883	-3.7301	-0.0019372	-0.10433	-5.4182E-05	519.3430850479069	25.669	1.4415	22.959	22.778	24.219	-2.7097					87	37	4	0	0	0	0.42962	2	279	279;295		64.207	11.629	1	632440			2898	6889;8438;8149	2135	2144	4106;4107	4106					0.15882891881915384
AVKPKAAKPKA	11	Unmodified	_AVKPKAAKPKA_					0	0	0		ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	ENSG00000184357|ENST00000331442|H1-5	MULTI-MSMS	OvCa9_classI_Rep2	2	554.8642578125	2	554.863683	1107.71281	2.7519	0.0015269	-3.0883	-0.0017136	-0.33643	-0.00018667	554.861798260073	27.986	0.52749	25.276	25.111	25.638	-2.7097					23	10	4	0	0	0	0.72473	1	540	540		19.104	4.2386	1	37661			2899	8149	2136	2145	4108	4108					0.16326563427696783
AVKPKAAKPKT	11	Unmodified	_AVKPKAAKPKT_					0	0	0		ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	MULTI-MSMS	OvCa9_classI_Rep2	2	569.8690795898438	2	569.868966	1137.72338	1.4908	0.00084956	-1.3607	-0.0007754	0.13013	7.416E-05	569.8680060004389	27.967	1.4627	25.257	24.994	26.456	-2.7097					48	31	3	0	0	0	0.69735	3	532	532;536;542		30.569	12.307	1	71415			2900	6889	2137	2146	4109;4110;4111	4109					0.16002546082108893
AVKSRRPGPR	10	Unmodified	_AVKSRRPGPR_					0	0	0			REV__ENST00000358220.5_1_10:1095483-1118068:+|nuORF	REV__ENST00000358220.5_1_10:1095483-1118068:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	562.3408813476562	2	562.343981	1122.67341	-2.9015	-0.0016316	1.6805	0.00094503	-1.221	-0.00068662	562.3448419475409	142.33	4.504	141.32	140	144.5	-1.0106					205	90	3	0	0	0	0.74374	1	11786	11786		25.574	1.3713	1	106680	+		2901	24795	2138	2147	4112	4112					0.11697856196838075
AVLCSSKR	8	Unmodified	_AVLCSSKR_					0	0	0		ENST00000481630.1_1_6:117824949-117829236:+|nuORF	ENST00000481630.1_1_6:117824949-117829236:+|nuORF	ENST00000481630.1_1_6:117824949-117829236:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	432.9032287597656	2	432.242012	862.469472	-0.34764	-0.00015026	-4.0947	-0.0017699	-4.4423	-0.0019202	432.2401456898828	37.68	0.27562	37.68	37.531	37.806	0					9	5	2	0	0	0	0.028476	1	2084	2084		40.573	17.53	1	70411			2902	12549	2139	2148	4113	4113					0.032735757111595376
AVLKHVLT	8	Unmodified	_AVLKHVLT_					0	0	0		ENSG00000155189|ENST00000285518|AGPAT5	ENSG00000155189|ENST00000285518|AGPAT5	ENSG00000155189|ENST00000285518|AGPAT5	MULTI-SECPEP	OvCa99_classI_Rep5	1	440.7671203613281	2	440.78437	879.554188	2.9299	0.0012915	-2.8173	-0.0012418	0.11261	4.9635E-05	440.78306744917234	81.834	0.24279	81.834	81.736	81.979	0					6	5	2	0	0	0	0.028476	1	8442	8442		25.45	0	1	239260			2903	5772	2140	2149	4114	4114					0.10959269519412373
AVLLELRK	8	Unmodified	_AVLLELRK_					0	0	0		ENSG00000113300|ENST00000261951|CNOT6	ENSG00000113300|ENST00000261951|CNOT6	ENSG00000113300|ENST00000261951|CNOT6	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.30999755859375	2	471.310752	940.606951	1.5017	0.00070778	-1.4762	-0.00069575	0.025522	1.2029E-05	471.3098936751472	34.387	2.0483	31.599	31.003	33.051	-2.7881					80	40	3	0	0	0	0.74971	1	1043	1043		26.796	0	1	114300			2904	2962	2141	2150	4115	4115					0.13427227582246815
AVLLVRGGD	9	Unmodified	_AVLLVRGGD_					0	0	0			REV__tr|A0A553SGN4|A0A553SGN4_NIACIPhosphoribosylamine--glycineligaseOS=NialliacirculansOX=1397GN=purDPE=3SV=1	REV__tr|A0A553SGN4|A0A553SGN4_NIACIPhosphoribosylamine--glycineligaseOS=NialliacirculansOX=1397GN=purDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	450.26922607421875	2	450.269084	898.523616	1.3254	0.0005968	-1.7002	-0.00076554	-0.37475	-0.00016874	450.2680012991639	61.146	3.3168	58.387	57.67	60.987	-2.7593					139	63	5	0	0	0	0.29717	1	4583	4583		63.306	19.189	1	6706400	+		2905	29725	2142	2151	4116	4116					0.07029491134380805
AVLLVRGGD	9	Unmodified	_AVLLVRGGD_					0	0	0			REV__tr|A0A553SGN4|A0A553SGN4_NIACIPhosphoribosylamine--glycineligaseOS=NialliacirculansOX=1397GN=purDPE=3SV=1	REV__tr|A0A553SGN4|A0A553SGN4_NIACIPhosphoribosylamine--glycineligaseOS=NialliacirculansOX=1397GN=purDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.2702331542969	2	450.269084	898.523616	0.66588	0.00029983	-1.2562	-0.00056561	-0.59027	-0.00026578	450.2683337986321	61.743	3.9648	58.286	57.567	61.531	-3.4577					187	81	5	0	0	0	0.34496	1	4309	4309		57.811	8.3697	1	30469000	+		2906	29725	2142	2151	4117	4117					0.07029491134380805
AVLPRSHR	8	Unmodified	_AVLPRSHR_					0	0	0		ENST00000510506.5_1_4:3948559-3952929:-|nuORF;chr3:75426599-75432808|199|10.49|0.55|4.25|-|1|FAM86DP,FAM86DP|1;nc|ENSG00000291071|Q05BU3|FAM86JP;ENST00000484945.5_1_3:75475665-75476639:-|nuORF;ENST00000309608.6_1_8:12285230-12291581:-|nuORF;ENST00000515245.5_1_3:129821671-129830240:-|nuORF;nc|ENSG00000186523|Q8N7N1-2|FAM86B1	ENST00000510506.5_1_4:3948559-3952929:-|nuORF	ENST00000510506.5_1_4:3948559-3952929:-|nuORF	MSMS	OvCa99_classI_Rep5	1	468.2796325683594	2	468.280318	934.546083	NaN	NaN	NaN	NaN	NaN	NaN	NaN	157.04	1	157.04	156.54	157.54	0								0	0	0	0.30129	1	18404	18404		47.916	10.887	1				2907	12973	2143	2152	4118	4118					0.07619135322659076
AVLQFGNIAL	10	Unmodified	_AVLQFGNIAL_					0	0	0		nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14	nc|ENSG00000105357|Q7Z406-5|MYH14	nc|ENSG00000105357|Q7Z406-5|MYH14	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3035888671875	2	523.305667	1044.59678	-0.69596	-0.0003642	-3.2951	-0.0017244	-3.9911	-0.0020886	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.69986	1	13931	13931		30.504	0.18592	1	130240			2908	2445	2144	2153	4119	4119					0.0762661985700106
AVLQREGKW	9	Unmodified	_AVLQREGKW_					0	0	0		tr|A0A553SGJ6|A0A553SGJ6_NIACIAspartate/glutamateracemasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10930PE=3SV=1	tr|A0A553SGJ6|A0A553SGJ6_NIACIAspartate/glutamateracemasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10930PE=3SV=1	tr|A0A553SGJ6|A0A553SGJ6_NIACIAspartate/glutamateracemasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10930PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.9724731445312	2	543.806365	1085.59818	-0.10608	-5.7688E-05	-1.8241	-0.00099197	-1.9302	-0.0010497	543.8048427145751	38.222	0.84163	35.296	35.057	35.898	-2.9264					23	16	2	0	0	0	0.027462	1	1496	1496		12.207	0	1	60464			2909	33164	2145	2154	4120	4120					0.05880253945770164
AVLRIEGRKIP	11	Unmodified	_AVLRIEGRKIP_					0	0	0		nc|ENSG00000226098|P0C7V7|SEC11B	nc|ENSG00000226098|P0C7V7|SEC11B	nc|ENSG00000226098|P0C7V7|SEC11B	MULTI-MSMS	OvCa9_classI_Rep2	2	626.3955688476562	2	626.398422	1250.78229	-5.6575	-0.0035439	1.9339	0.0012114	-3.7236	-0.0023325	626.399798342313	162.89	0.17784	162.66	162.54	162.72	-0.22696					7	4	2	0	0	0	0.72521	1	16606	16606		12.812	0.60503	1	238500			2910	15323	2146	2155	4121	4121					0.16693022376489353
AVLSSFRD	8	Unmodified	_AVLSSFRD_					0	0	0		SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant;nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant	SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	447.7393798828125	2	447.737617	893.460681	0.18521	8.2925E-05	0.024338	1.0897E-05	0.20955	9.3822E-05	447.73749027351613	51.624	0.84105	51.624	51.418	52.259	0					43	19	3	0	0	0	0.56195	1	3997	3997		71.296	5.4925	1	1597700			2911	1794	2147	2156	4122	4122					0.009689253463420755
AVLVSPLLG	9	Unmodified	_AVLVSPLLG_					0	0	0		tr|A0A7D6VY30|A0A7D6VY30_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15200PE=3SV=1	tr|A0A7D6VY30|A0A7D6VY30_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15200PE=3SV=1	tr|A0A7D6VY30|A0A7D6VY30_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15200PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	434.7813415527344	2	434.778754	867.542954	0.71682	0.00031166	2.0978	0.00091208	2.8146	0.0012237	434.77949683333657	61.541	1.6442	58.083	57.516	59.16	-3.4577					92	33	4	0	0	0	0.59983	1	4234	4234		31.955	3.7006	1	673390			2912	35313	2148	2157	4123	4123					0.10388447425305003
AVMIVYPMGL	10	Unmodified	_AVMIVYPMGL_					0	0	0		ENST00000483315.1_1_21:33975401-33976611:-|nuORF;ENSG00000159079|ENST00000290155|CFAP298	ENST00000483315.1_1_21:33975401-33976611:-|nuORF	ENST00000483315.1_1_21:33975401-33976611:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	547.2925415039062	2	547.292856	1092.57116	0.5771	0.00031584	-3.8093	-0.0020848	-3.2322	-0.0017689	547.2906017022029	74.411	1.1118	74.411	74.056	75.168	0					42	27	3	0	0	0	0.4178	1	7348	7348		65.897	2.5912	1	8495000			2913	5984	2149	2158	4124	4124					0.028576860187058628
AVMVPIVI	8	Oxidation (M)	_AVM(Oxidation (M))VPIVI_		AVM(1)VPIVI		AVM(67)VPIVI	0	0	1		tr|A0A7D6VY24|A0A7D6VY24_9CLOT2-keto-3-deoxygluconatepermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17805PE=3SV=1	tr|A0A7D6VY24|A0A7D6VY24_9CLOT2-keto-3-deoxygluconatepermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17805PE=3SV=1	tr|A0A7D6VY24|A0A7D6VY24_9CLOT2-keto-3-deoxygluconatepermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17805PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	429.2647705078125	2	429.261882	856.509211	1.9723	0.00084662	2.3742	0.0010191	4.3464	0.0018658	429.26283400884654	67.703	1.3741	64.213	63.888	65.262	-3.4902					73	27	3	0	0	0	0.58426	1	5001	5001		67.327	12.551	1	985440			2914	35310	2150	2159	4125	4125		774			0.07521702661870222
AVNAHSNILK	10	Unmodified	_AVNAHSNILK_					0	0	0		ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000490238.5_1_2:86389097-86393741:-|nuORF;ENST00000435590.1_1_21:46097057-46097849:-|nuORF	ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000435590.1_1_21:46097057-46097849:-|nuORF	ENST00000409258.2_1_2:86386442-86398424:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	533.7978515625	2	533.803823	1065.59309	-1.2593	-0.00067223	1.1362	0.00060651	-0.12313	-6.5727E-05	533.8043186764647	45.985	1.0451	43.275	42.998	44.043	-2.7097					58	20	4	0	0	0	0.39718	1	2713	2713		68.846	10.616	1	355770			2915	4124;11865	2151	2160	4126	4126					0.06291950083118536
AVNAHSNILK	10	Unmodified	_AVNAHSNILK_					0	0	0		ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT;ENST00000490238.5_1_2:86389097-86393741:-|nuORF;ENST00000435590.1_1_21:46097057-46097849:-|nuORF	ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000435590.1_1_21:46097057-46097849:-|nuORF	ENST00000409258.2_1_2:86386442-86398424:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.8040771484375	2	533.803823	1065.59309	-1.4864	-0.00079343	1.1201	0.00059789	-0.36632	-0.00019554	533.8044065137886	46.393	2.0462	43.32	42.927	44.973	-3.0724					83	39	4	0	0	0	0.026604	3	2431	2420;2431;2444		140.11	30.634	1	1394700			2916	4124;11865	2151	2160	4127;4128;4129	4128					0.06291950083118536
AVNKINRK	8	Unmodified	_AVNKINRK_					0	0	0		ZDBF2|p.G2318Rfs*12|1|0.09|ENSG00000204186|chr2:206311479-206311480|-/AGAGCTGTGGATATAAT|frameshift_variant;ENSG00000204186|ENST00000374423|ZDBF2	ZDBF2|p.G2318Rfs*12|1|0.09|ENSG00000204186|chr2:206311479-206311480|-/AGAGCTGTGGATATAAT|frameshift_variant	ZDBF2|p.G2318Rfs*12|1|0.09|ENSG00000204186|chr2:206311479-206311480|-/AGAGCTGTGGATATAAT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.79364013671875	2	471.795801	941.577048	1.5263	0.00072011	-1.3942	-0.00065775	0.13217	6.2356E-05	471.7949230550007	34.013	0.79439	31.224	31.003	31.797	-2.7881					26	15	3	0	0	0	0.74229	1	971	971		30.504	0	1	48409			2917	8955	2152	2161	4130	4130					0.1039228863688777
AVNPKFLAV	9	Unmodified	_AVNPKFLAV_					0	0	0		ENSG00000172725|ENST00000341356|CORO1B;ENST00000453768.6_1_11:67208484-67210099:-|nuORF	ENSG00000172725|ENST00000341356|CORO1B	ENSG00000172725|ENST00000341356|CORO1B	MSMS	OvCa9_classI_Rep3	3	479.7896728515625	2	479.789653	957.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.002	1	91.04	90.54	91.54	-1.9617								0	0	0	0.13926	1	5929	5929		65.803	2.4969	1				2918	7314	2153	2162	4131	4131					0.0842725217385123
AVPTYAVAKTI	11	Unmodified	_AVPTYAVAKTI_					0	0	0		tr|A0A553SK58|A0A553SK58_NIACIAI-2EfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_17955PE=3SV=1	tr|A0A553SK58|A0A553SK58_NIACIAI-2EfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_17955PE=3SV=1	tr|A0A553SK58|A0A553SK58_NIACIAI-2EfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_17955PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3301391601562	2	567.331882	1132.64921	-0.48412	-0.00027465	-3.1025	-0.0017602	-3.5866	-0.0020348	567.3299446868054	145.54	4.8872	144.11	142.68	147.57	-1.4357					247	95	4	0	0	0	0.68399	1	14242	14242		35.152	3.6222	1	208760			2919	33580	2154	2163	4132	4132					0.0881915819995811
AVPVESKPDKP	11	Unmodified	_AVPVESKPDKP_					0	0	0		nc|ENSG00000153113|P20810-3|CAST;nc|ENSG00000153113|P20810-4|CAST;nc|ENSG00000153113|P20810-8|CAST;nc|ENSG00000153113|P20810-2|CAST;nc|ENSG00000153113|P20810|CAST;nc|ENSG00000153113|P20810-9|CAST;nc|ENSG00000153113|P20810-5|CAST;nc|ENSG00000153113|P20810-10|CAST;nc|ENSG00000153113|P20810-7|CAST;ENSG00000153113|ENST00000675179|CAST	nc|ENSG00000153113|P20810-3|CAST	nc|ENSG00000153113|P20810-3|CAST	MULTI-MSMS	OvCa9_classI_Rep2	2	583.8236083984375	2	583.824421	1165.63429	-0.17595	-0.00010273	-0.13861	-8.0926E-05	-0.31457	-0.00018365	583.8242751435387	106.81	1.1772	106.5	106.23	107.4	-0.30836					69	23	4	0	0	0	0.68399	1	9973	9973		35.152	2.4015	1	455720			2920	5661	2155	2164	4133	4133					0.05809666331947483
AVQLSVLGV	9	Unmodified	_AVQLSVLGV_					0	0	0			REV__ENST00000574951.5_1_17:4872053-4885503:-|nuORF	REV__ENST00000574951.5_1_17:4872053-4885503:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	443.2740173339844	2	443.273835	884.533118	1.1525	0.00051086	-4.3689	-0.0019366	-3.2165	-0.0014258	443.27180064343105	139.52	2.0991	138.02	137.22	139.32	-1.4952					91	40	3	0	0	0	0.65476	1	13656	13656		25.45	1.2474	1	858700	+		2921	17892	2156	2165	4134	4134					0.08623259419891838
AVQQVAQKL	9	Unmodified	_AVQQVAQKL_					0	0	0		ENSG00000066422|ENST00000312938|ZBTB11	ENSG00000066422|ENST00000312938|ZBTB11	ENSG00000066422|ENST00000312938|ZBTB11	MULTI-MSMS	OvCa9_classI_Rep3	3	492.7953186035156	2	492.795466	983.57638	-0.61364	-0.0003024	0.50992	0.00025129	-0.10372	-5.1115E-05	492.7955881517548	74.379	1.8789	71.969	71.499	73.378	-2.4106					135	37	6	0	0	0	0.33652	1	3717	3717		58.782	5.4305	1	461870			2922	1351	2157	2166	4135	4135					0.08393449197183145
AVQSLLRPR	9	Unmodified	_AVQSLLRPR_					0	0	0			REV__ENSG00000114491|ENST00000232607|UMPS	REV__ENSG00000114491|ENST00000232607|UMPS	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3203735351562	2	520.322183	1038.62981	1.6005	0.00083277	-1.6941	-0.00088148	-0.093622	-4.8714E-05	520.3211025599854	29.328	0.65627	26.619	26.407	27.063	-2.7097					29	13	3	0	0	0	0.67509	1	717	717		23.042	3.6825	1	67532	+		2923	18190	2158	2167	4136	4136					0.11204246699708165
AVQVSNKKK	9	Unmodified	_AVQVSNKKK_					0	0	0		nc|ENSG00000106344|Q9NW13-2|RBM28;RBM28|p.N724Kfs*2|1|0.2|ENSG00000106344|chr7:128310905-128310906|-/C|frameshift_variant;ENSG00000106344|ENST00000223073|RBM28	nc|ENSG00000106344|Q9NW13-2|RBM28	nc|ENSG00000106344|Q9NW13-2|RBM28	MULTI-MSMS	OvCa9_classI_Rep2	2	501.3089599609375	2	501.308741	1000.60293	-1.322	-0.00066273	1.1963	0.00059973	-0.12567	-6.2998E-05	501.30910406164554	33.109	0.39941	30.399	30.222	30.622	-2.7097					18	7	3	0	0	0	0.3076	1	1157	1157		62.107	3.3255	1	78143			2924	2544	2159	2168	4137	4137					0.10265138088516323
AVQVVRVNVP	10	Unmodified	_AVQVVRVNVP_					0	0	0			REV__chr13:18229608-18230074|86|14.91|0.46|5.03|+|0|FAM230C,FAM230C|1	REV__chr13:18229608-18230074|86|14.91|0.46|5.03|+|0|FAM230C,FAM230C|1	MULTI-MSMS	OvCa9_classI_Rep3	3	540.831298828125	2	540.82984	1079.64513	2.013	0.0010887	0.75549	0.00040859	2.7684	0.0014973	540.8302826822948	124.41	3.5435	123.37	123.03	126.57	-1.0377					194	67	5	0	0	0	0.72319	1	9805	9805		27.882	0	1	8697600	+		2925	15897	2160	2169	4138	4138					0.10849113496919927
AVRAPGRPRPK	11	Unmodified	_AVRAPGRPRPK_					0	0	0			REV__ENST00000476898.1_1_X:56258973-56259042:+|nuORF	REV__ENST00000476898.1_1_X:56258973-56259042:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	602.8748168945312	2	602.872905	1203.73126	-1.257	-0.00075783	3.0097	0.0018145	1.7527	0.0010567	602.8746995198144	103.48	1.8281	102.8	102.48	104.3	-0.68459					107	36	5	0	0	0	0.48738	2	9569	9540;9569		54.776	12.879	1	1480000	+		2926	26375	2161	2170	4139;4140	4140					0.13754118122255932
AVRKHEAIE	9	Unmodified	_AVRKHEAIE_					0	0	0		SPTBN2|p.R1805Qfs*108|1|0.25|ENSG00000173898|chr11:66691414-66691435|TGGCGTGCCCCGTGCAGGAAGC/-|frameshift_variant;SPTBN2|p.A1813Pfs*107|1|0.29|ENSG00000173898|chr11:66691412-66691412|C/-|frameshift_variant;SPTBN2|p.A2190Pfs*127|1|0.23|ENSG00000173898|chr11:66687581-66687581|C/-|frameshift_variant;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2;SPTBN2|p.G1605Afs*7|1|0.04|ENSG00000173898|chr11:66693226-66693226|C/-|frameshift_variant	SPTBN2|p.R1805Qfs*108|1|0.25|ENSG00000173898|chr11:66691414-66691435|TGGCGTGCCCCGTGCAGGAAGC/-|frameshift_variant	SPTBN2|p.R1805Qfs*108|1|0.25|ENSG00000173898|chr11:66691414-66691435|TGGCGTGCCCCGTGCAGGAAGC/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	526.7933349609375	2	526.795998	1051.57744	-0.010456	-5.5081E-06	-3.7338	-0.0019669	-3.7442	-0.0019725	526.7939533336348	69.652	2.0549	66.84	66.016	68.071	-2.8118					81	40	4	0	0	0	0.40667	1	3116	3116		51.335	1.8939	1	346270			2927	7425	2162	2171	4141	4141					0.05371663566074858
AVRLNEKNYE	10	Unmodified	_AVRLNEKNYE_					0	0	0		ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H;ENST00000521707.1_1_8:54669113-54684583:-|nuORF	ENSG00000047249|ENST00000359530|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	MULTI-MSMS	OvCa99_classI_Rep5	1	618.3234252929688	2	618.322576	1234.6306	0.79262	0.0004901	-1.4781	-0.00091394	-0.68547	-0.00042384	618.3215326136908	124.25	1.4482	124.25	123.92	125.37	0					114	32	5	0	0	0	0.5675	1	14366	14366		45.972	0	1	10117000			2928	1140	2163	2172	4142	4142					0.022669965581144425
AVRLPIVDI	9	Unmodified	_AVRLPIVDI_					0	0	0		CON__P04258;ENST00000487010.1_1_2:189875322-189876497:+|nuORF;nc|ENSG00000168542|P02461-2|COL3A1;ENSG00000168542|ENST00000304636|COL3A1	CON__P04258	CON__P04258	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3152160644531	2	498.316035	994.617516	0.23096	0.00011509	-0.60423	-0.0003011	-0.37328	-0.00018601	498.315540241021	111.53	1.5703	110.02	109.53	111.1	-1.5111					86	29	7	0	0	0	0.27001	2	10292	10292;10304		66.429	7.6473	1	1295000		+	2929	619	2164	2173	4143;4144	4143					0.11999210236660929
AVRPGILPVM	10	Unmodified	_AVRPGILPVM_					0	0	0		ENST00000309575.4_1_3:142838724-142839039:+|nuORF	ENST00000309575.4_1_3:142838724-142839039:+|nuORF	ENST00000309575.4_1_3:142838724-142839039:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.3414306640625	2	526.817887	1051.62122	-1.3172	-0.0006939	-4.0842	-0.0021516	-5.4014	-0.0028455	526.8149216568642	87.601	1.2312	85.424	85.087	86.318	-2.1768					42	23	3	0	0	0	0.026669	1	5239	5239		47.916	0	1	55068			2930	10275	2165	2174	4145	4145					0.09747556738875574
AVRRALGKH	9	Unmodified	_AVRRALGKH_					0	0	0		ENSG00000065802|ENST00000264607|ASB1	ENSG00000065802|ENST00000264607|ASB1	ENSG00000065802|ENST00000264607|ASB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.7616882324219	2	504.314692	1006.61483	-0.79314	-0.00039999	0.072112	3.6367E-05	-0.72103	-0.00036363	504.3146810012321	26.268	0.20067	26.268	26.092	26.292	0					5	3	2	0	0	0	0.027462	1	666	666		25.45	12.491	1	15305			2931	1337	2166	2175	4146	4146					0.11178799622371116
AVRTLKPPGR	10	Unmodified	_AVRTLKPPGR_					0	0	0		ENSG00000115596|ENST00000233948|WNT6	ENSG00000115596|ENST00000233948|WNT6	ENSG00000115596|ENST00000233948|WNT6	MULTI-MSMS	OvCa9_classI_Rep2	2	547.3402709960938	2	547.843282	1093.67201	0.65276	0.00035761	-2.7474	-0.0015051	-2.0946	-0.0011475	547.8416503303802	71.419	3.1748	68.911	67.929	71.104	-2.5071					123	60	3	0	0	0	0.73378	1	5797	5797		26.693	1.2427	1	1272400			2932	3111	2167	2176	4147	4147					0.12892222108075657
AVRTPFAVL	9	Unmodified	_AVRTPFAVL_					0	0	0			REV__ENSG00000182093|ENST00000649170|GET1	REV__ENSG00000182093|ENST00000649170|GET1	MULTI-MSMS	OvCa9_classI_Rep2	2	487.2936096191406	2	487.295102	972.575651	-1.5875	-0.0007736	-2.7606	-0.0013452	-4.3482	-0.0021188	487.2937066188987	143.42	1.0862	143.19	142.8	143.89	-0.22696					37	21	2	0	0	0	0.70177	1	14436	14436		17.365	0	1	43295	+		2933	22261	2168	2177	4148	4148					0.08826654548113311
AVSEHRLSNK	10	Unmodified	_AVSEHRLSNK_					0	0	0		ENSG00000104960|ENST00000391842|PTOV1;nc|ENSG00000104960|Q86YD1-2|PTOV1;ENST00000601501.5_1_19:50354350-50358367:+|nuORF;ENST00000598632.5_1_19:50354098-50358367:+|nuORF;ENST00000602040.5_1_19:50354666-50357992:+|nuORF	ENSG00000104960|ENST00000391842|PTOV1	ENSG00000104960|ENST00000391842|PTOV1	MULTI-MSMS	OvCa9_classI_Rep2	2	570.8095703125	2	570.809636	1139.60472	0.40803	0.00023291	-0.52619	-0.00030035	-0.11816	-6.7449E-05	570.8091259353043	29.792	0.62796	27.082	26.88	27.508	-2.7097					23	12	3	0	0	0	0.50873	2	755	748;755		53.089	26.396	1	67359			2934	2411	2169	2178	4149;4150	4150					0.04050147106477198
AVSVSTKNELR	11	Unmodified	_AVSVSTKNELR_					0	0	0			REV__ENST00000508503.5_1_3:98235702-98241699:-|nuORF	REV__ENST00000508503.5_1_3:98235702-98241699:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.1955261230469	3	401.894577	1202.6619	0.32549	0.00013081	1.2071	0.00048513	1.5326	0.00061595	402.230347551402	34.729	0.27888	34.729	34.539	34.818	0					9	5	3	0	0	0	0.025701	1	1697	1697		25.892	0	1	18739	+		2935	26914	2170	2179	4151	4151					0.06867569592168365
AVTSRQDPT	9	Unmodified	_AVTSRQDPT_					0	0	0		ENST00000486520.1_1_21:48081621-48084236:+|nuORF;TIAL1-PRMT2|4|fusion;nc|ENSG00000160310|P55345-3|PRMT2;TIAL1-PRMT2|1|fusion;CSTF3-PRMT2|4|fusion;ENSG00000160310|ENST00000355680|PRMT2;CSTF3-PRMT2|1|fusion	ENST00000486520.1_1_21:48081621-48084236:+|nuORF	ENST00000486520.1_1_21:48081621-48084236:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	487.2821960449219	2	487.748713	973.482873	-0.98265	-0.00047929	-3.9122	-0.0019082	-4.8948	-0.0023874	487.74427790158535	95.081	0.19785	93.185	93.063	93.261	-1.8956					5	3	2	0	0	0	0.027462	1	6178	6178		45.952	10.334	1	10356			2936	690	2171	2180	4152	4152					-0.0049289497588915765
AVTSVAKVV	9	Unmodified	_AVTSVAKVV_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	OvCa99_classI_Rep5	1	437.2752380371094	2	437.273835	872.533118	-0.10472	-4.5793E-05	0.41307	0.00018063	0.30835	0.00013483	437.273682835487	65.642	0.82309	65.642	65.426	66.25	0					43	20	4	0	0	0	0.074342	1	6042	6042		104.75	30.492	1	2115300			2937	6619	2172	2181	4153	4153					0.09175259419907889
AVTVAKAKSTN	11	Unmodified	_AVTVAKAKSTN_					0	0	0			REV__tr|A0A553SIJ0|A0A553SIJ0_NIACIPeptidaseS8OS=NialliacirculansOX=1397GN=CEQ21_14910PE=3SV=1	REV__tr|A0A553SIJ0|A0A553SIJ0_NIACIPeptidaseS8OS=NialliacirculansOX=1397GN=CEQ21_14910PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3165283203125	2	545.316763	1088.61897	-1.7047	-0.0009296	1.3026	0.00071033	-0.40209	-0.00021926	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.71789	1	14254	14254		23.523	4.4192	1	202430	+		2938	29895	2173	2182	4154	4154					0.07820799534783873
AVVDAVRRAL	10	Unmodified	_AVVDAVRRAL_					0	0	0			REV__ENSG00000198113|ENST00000357503|TOR4A	REV__ENSG00000198113|ENST00000357503|TOR4A	MULTI-MSMS	OvCa9_classI_Rep2	2	535.3272094726562	2	535.327465	1068.64038	-1.2502	-0.00066929	0.80875	0.00043294	-0.4415	-0.00023635	535.3279070397938	59.315	2.607	56.535	55.888	58.495	-2.7801					134	49	4	0	0	0	0.72319	1	4330	4330		27.882	0.83493	1	990330	+		2939	22989	2174	2183	4155	4155					0.10880229354120274
AVVLPSLLSL	10	Unmodified	_AVVLPSLLSL_					0	0	0			REV__ENST00000449193.6_1_10:21808518-21812771:-|nuORF	REV__ENST00000449193.6_1_10:21808518-21812771:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	506.32537841796875	2	506.326068	1010.63758	-1.1859	-0.00060045	-1.3158	-0.00066623	-2.5017	-0.0012667	506.3252171865675	75.863	1.6032	73.491	73.112	74.715	-2.3715					111	30	6	0	0	0	0.52321	1	3872	3872		51.335	4.569	1	794960	+		2940	25943	2175	2184	4156	4156					0.13268961176606808
AVVMAVAQLYF	11	Unmodified	_AVVMAVAQLYF_					0	0	0		ENSG00000103723|ENST00000535359|AP3B2;nc|ENSG00000103723|Q13367|AP3B2;nc|ENSG00000103723|Q13367-3|AP3B2	ENSG00000103723|ENST00000535359|AP3B2	ENSG00000103723|ENST00000535359|AP3B2	MULTI-SECPEP	OvCa9_classI_Rep2	2	404.56732177734375	3	404.554615	1210.64202	0.78987	0.00031954	3.374	0.001365	4.1639	0.0016845	404.5557263910949	57.64	0.54498	54.848	54.427	54.972	-2.792					12	10	2	0	0	0	0.026056	1	4122	4122		13.508	0	1	9134.8			2941	2338	2176	2185	4157	4157					0.045121023278625216
AVVPALLPDL	10	Unmodified	_AVVPALLPDL_					0	0	0		ENST00000268070.8_1_15:100514484-100533361:-|nuORF	ENST00000268070.8_1_15:100514484-100533361:-|nuORF	ENST00000268070.8_1_15:100514484-100533361:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	504.2987060546875	2	504.310418	1006.60628	-1.2106	-0.0006105	-0.93347	-0.00047076	-2.144	-0.0010813	504.31026023680727	103.73	0.84082	103.16	102.93	103.77	-0.57639					42	16	3	0	0	0	0.026939	1	9557	9557		40.573	17.53	1	59332			2942	9971	2177	2186	4158	4158					0.10324388142510088
AVVPESELPE	10	Unmodified	_AVVPESELPE_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa99_classI_Rep5	1	535.2758178710938	2	535.274229	1068.53391	1.7497	0.00093657	0.47766	0.00025568	2.2274	0.0011922	535.2743740035442	129.56	2.3123	129.56	128.84	131.15	0					122	48	5	0	0	0	0.45225	1	15045	15045		60.972	0.67798	1	4983700	+		2943	28942;32737	2178	2187	4159	4159					0.0023800927829142893
AVVPIVSLVL	10	Unmodified	_AVVPIVSLVL_					0	0	0			REV__NPC1L1|p.I355V|1|0.51|ENSG00000015520|chr7:44539334-44539334|T/C|missense_variant	REV__NPC1L1|p.I355V|1|0.51|ENSG00000015520|chr7:44539334-44539334|T/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	505.3349304199219	2	505.336436	1008.65832	-1.5896	-0.00080328	-1.4792	-0.00074747	-3.0687	-0.0015507	505.33553637163743	52.434	1.3828	49.621	49.295	50.678	-2.8129					63	27	4	0	0	0	0.72319	1	3493	3493		27.882	5.9224	1	263260	+		2944	16519	2179	2188	4160	4160					0.15433551556270686
AVVPIVSLVL	10	Unmodified	_AVVPIVSLVL_					0	0	0			REV__NPC1L1|p.I355V|1|0.51|ENSG00000015520|chr7:44539334-44539334|T/C|missense_variant	REV__NPC1L1|p.I355V|1|0.51|ENSG00000015520|chr7:44539334-44539334|T/C|missense_variant	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	505.336436	1008.65832	-1.5896	-0.00080328	-1.4792	-0.00074747	-3.0687	-0.0015507	505.33553637163743	52.434	1.3828	49.621	49.295	50.678	-2.8129	-0.089225	0.00035597	NaN	27.882	63	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263260	+		2945	16519	2179	2188							0.15433551556270686
AVVPIVSLVL	10	Unmodified	_AVVPIVSLVL_					0	0	0			REV__NPC1L1|p.I355V|1|0.51|ENSG00000015520|chr7:44539334-44539334|T/C|missense_variant	REV__NPC1L1|p.I355V|1|0.51|ENSG00000015520|chr7:44539334-44539334|T/C|missense_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	505.336436	1008.65832	-1.0707	-0.00054104	-2.1935	-0.0011085	-3.2642	-0.0016495	505.33519380588405	53.008	1.5664	49.8	49.4	50.967	-3.208	0.089225	-0.00036604	NaN	27.882	94	30	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276850	+		2946	16519	2179	2188							0.15433551556270686
AVVSKRTF	8	Unmodified	_AVVSKRTF_					0	0	0			REV__nc|ENSG00000168903|Q6UXE8-2|BTNL3	REV__nc|ENSG00000168903|Q6UXE8-2|BTNL3	MULTI-MSMS	OvCa99_classI_Rep5	1	454.2718505859375	2	454.271627	906.528701	-0.6747	-0.0003065	0.51345	0.00023325	-0.16124	-7.3249E-05	454.2717486857002	27.072	0.39942	27.072	26.792	27.191	0					12	7	3	0	0	0	0.61758	1	769	769		60.294	4.7898	1	62676	+		2947	28994	2180	2189	4161	4161					0.07169794996991641
AVVSVVLVSL	10	Unmodified	_AVVSVVLVSL_					0	0	0			REV__nc|ENSG00000136869|O00206-2|TLR4	REV__nc|ENSG00000136869|O00206-2|TLR4	MULTI-MSMS	OvCa9_classI_Rep2	2	493.3180847167969	2	493.318243	984.621933	-0.29859	-0.0001473	-0.49169	-0.00024256	-0.79028	-0.00038986	493.31794941561196	103.58	2.8206	103	102.39	105.21	-0.57639					183	56	5	0	0	0	0.027703	1	9579	9579		138.83	0.76312	1	4529700	+		2948	19414	2181	2190	4162	4162					0.12900674659567812
AVVSVVLVSL	10	Unmodified	_AVVSVVLVSL_					0	0	0			REV__nc|ENSG00000136869|O00206-2|TLR4	REV__nc|ENSG00000136869|O00206-2|TLR4	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.317626953125	2	493.318243	984.621933	-0.045161	-2.2279E-05	-0.87216	-0.00043025	-0.91732	-0.00045253	493.3177637339079	105.04	2.7633	103.03	102.64	105.4	-2.0161					193	53	7	0	0	0	0.15262	1	9579	9579		101.6	8.0031	1	5257600	+		2949	19414	2181	2190	4163	4163					0.12900674659567812
AVVTYIAF	8	Unmodified	_AVVTYIAF_					0	0	0		nc|ENSG00000156920|Q8IZF6-2|ADGRG4;nc|ENSG00000156920|Q8IZF6-3|ADGRG4;ENSG00000156920|ENST00000394143|ADGRG4	nc|ENSG00000156920|Q8IZF6-2|ADGRG4	nc|ENSG00000156920|Q8IZF6-2|ADGRG4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.29681396484375	2	442.249829	882.485105	0.31143	0.00013773	4.1771	0.0018473	4.4885	0.0019851	442.25146778063373	68.562	0.98042	65.071	64.478	65.459	-3.4902					44	19	4	0	0	0	0.028476	1	5057	5057		35.201	0	1	33463			2950	5863	2182	2191	4164	4164					0.03916185499861058
AVVVHDCI	8	Unmodified	_AVVVHDCI_					0	0	0		ENSG00000170852|ENST00000304056|KBTBD2	ENSG00000170852|ENST00000304056|KBTBD2	ENSG00000170852|ENST00000304056|KBTBD2	MULTI-MSMS	OvCa9_classI_Rep3	3	428.2237243652344	2	428.223288	854.432024	2.1294	0.00091187	-2.0334	-0.00087077	0.095985	4.1103E-05	428.2222618775492	62.473	1.7234	59.439	58.937	60.66	-3.0339					58	35	3	0	0	0	0.72922	1	2280	2280		37.028	0	1	42700			2951	7144	2183	2192	4165	4165					-0.00101515554456455
AVWKGGRVV	9	Unmodified	_AVWKGGRVV_					0	0	0			REV__ENST00000393067.7_1_11:111224109-111224400:-|nuORF	REV__ENST00000393067.7_1_11:111224109-111224400:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.303466796875	2	486.292894	970.571235	1.1865	0.00057697	-0.31405	-0.00015272	0.87241	0.00042425	486.292741398622	143.71	1.5286	143.71	143.02	144.55	0					34	30	2	0	0	0	0.027462	1	16739	16739		18.324	6.1176	1	31083	+		2952	25274	2184	2193	4166	4166					0.08477190125233847
AVWYCGYLIA	10	Unmodified	_AVWYCGYLIA_					0	0	0			REV__ENSG00000103044|ENST00000569188|HAS3	REV__ENSG00000103044|ENST00000569188|HAS3	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.7861328125	2	579.786253	1157.55795	-0.49429	-0.00028658	-1.7677	-0.0010249	-2.262	-0.0013115	579.7849172941892	59.325	1.7794	55.933	55.604	57.383	-3.392					98	35	4	0	0	0	0.5794	1	3977	3977		44.531	6.7195	1	1241800	+		2953	17592	2185	2194	4167	4167					-0.014524287690392157
AVWYCGYLIA	10	Unmodified	_AVWYCGYLIA_					0	0	0			REV__ENSG00000103044|ENST00000569188|HAS3	REV__ENSG00000103044|ENST00000569188|HAS3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	579.786253	1157.55795	-0.77904	-0.00045168	-1.1158	-0.00064691	-1.8948	-0.0010986	579.7853272248854	58.923	1.485	56.143	55.537	57.022	-2.7801	0.10497	0.00046156	NaN	44.531	68	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208860	+		2954	17592	2185	2194							-0.014524287690392157
AVYENAREK	9	Unmodified	_AVYENAREK_					0	0	0		ENST00000523321.5_1_8:95835614-95871872:+|nuORF;INTS8|p.V788Gfs*31|1|0.04|ENSG00000164941|chr8:94867286-94867286|T/-|frameshift_variant;nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8	ENST00000523321.5_1_8:95835614-95871872:+|nuORF	ENST00000523321.5_1_8:95835614-95871872:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	540.2774658203125	2	540.277638	1078.54072	-1.8058	-0.00097565	2.504	0.0013528	0.69815	0.00037719	540.2788136697856	33.715	0.49348	31.005	30.823	31.316	-2.7097					18	9	3	0	0	0	0.3076	1	1231	1231		62.107	3.3255	1	100520			2955	6503	2186	2195	4168	4168					0.004593669495079666
AVYGGFKSK	9	Unmodified	_AVYGGFKSK_					0	0	0		nc|ENSG00000196616|P00325-2|ADH1B;ENSG00000196616|ENST00000305046|ADH1B	nc|ENSG00000196616|P00325-2|ADH1B	nc|ENSG00000196616|P00325-2|ADH1B	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.7635803222656	2	478.763635	955.512717	-0.72429	-0.00034677	0.11769	5.6344E-05	-0.60661	-0.00029042	478.76350088187746	45.817	0.99084	42.779	42.595	43.586	-3.0385					34	18	2	0	0	0	0.14855	1	2360	2360		85.161	13.865	1	565240			2956	8635	2187	2196	4169	4169					0.03318088760090632
AVYKTHVEK	9	Unmodified	_AVYKTHVEK_					0	0	0		ENSG00000196954|ENST00000444739|CASP4;nc|ENSG00000196954|P49662-2|CASP4;ENST00000529565.1_1_11:104819221-104819389:-|nuORF;ENST00000534356.1_1_11:104817674-104819389:-|nuORF	ENSG00000196954|ENST00000444739|CASP4	ENSG00000196954|ENST00000444739|CASP4	MULTI-MSMS	OvCa9_classI_Rep2	2	537.7996826171875	2	537.800749	1073.58694	-1.2694	-0.0006827	0.95057	0.00051122	-0.31886	-0.00017148	537.8009996398492	32.518	0.69174	29.808	29.63	30.321	-2.7097					33	13	3	0	0	0	0.53483	1	1085	1085		39.253	6.4404	1	92578			2957	8664	2188	2197	4170	4170					0.0530943185160595
AVYNSPKVY	9	Unmodified	_AVYNSPKVY_					0	0	0		ENST00000528758.1_1_11:7507087-7531416:+|nuORF;ENSG00000183801|ENST00000329293|OLFML1	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.3338012695312	2	520.7742	1039.53385	-0.17016	-8.8613E-05	0.046954	2.4453E-05	-0.1232	-6.416E-05	520.7738526864898	67.31	2.0797	64.649	63.403	65.483	-2.661					88	41	5	0	0	0	0.027432	1	5257	5257		77.318	46.814	1	258920			2958	8108	2189	2198	4171	4171					0.01566054068939593
AVYNSPKVY	9	Unmodified	_AVYNSPKVY_					0	0	0		ENST00000528758.1_1_11:7507087-7531416:+|nuORF;ENSG00000183801|ENST00000329293|OLFML1	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.774658203125	2	520.7742	1039.53385	0.6756	0.00035183	-0.80169	-0.0004175	-0.12609	-6.5666E-05	520.7735947752728	67.994	1.3211	64.503	64.186	65.507	-3.4902					70	26	4	0	0	0	0.094616	2	5031	5019;5031		98.629	39.847	1	1458200			2959	8108	2189	2198	4172;4173	4173					0.01566054068939593
AVYPEQIFRPA	11	Unmodified	_AVYPEQIFRPA_					0	0	0			REV__nc|ENSG00000148600|Q96JP9-2|CDHR1	REV__nc|ENSG00000148600|Q96JP9-2|CDHR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	431.7484436035156	3	430.89955	1289.67682	0.43027	0.0001854	2.3309	0.0010044	2.7611	0.0011898	430.90048447146233	55.965	1.3681	52.671	52.311	53.679	-3.2944					50	26	4	0	0	0	0.02625	1	3587	3587		13.508	8.095	1	122700	+		2960	20116	2190	2199	4174	4174					0.04357061460200384
AVYPEQIFRPA	11	Unmodified	_AVYPEQIFRPA_					0	0	0			REV__nc|ENSG00000148600|Q96JP9-2|CDHR1	REV__nc|ENSG00000148600|Q96JP9-2|CDHR1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	430.89955	1289.67682	-1.4138	-0.00060921	4.3654	0.0018811	2.9516	0.0012719	430.901412499155	55.361	1.093	52.547	52.122	53.215	-2.8139	-0.061906	0.0010572	NaN	9.2118	39	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50006	+		2961	20116	2190	2199							0.04357061460200384
AVYQVACG	8	Unmodified	_AVYQVACG_					0	0	0		ENSG00000107611|ENST00000377833|CUBN;CUBN|p.N2467Tfs*26|1|0.51|ENSG00000107611|chr10:16913949-16913949|A/-|frameshift_variant;CUBN|p.R2817Mfs*39|1|0.03|ENSG00000107611|chr10:16899144-16899145|-/CATTCCCA|frameshift_variant	ENSG00000107611|ENST00000377833|CUBN	ENSG00000107611|ENST00000377833|CUBN	MULTI-MSMS	OvCa99_classI_Rep5	1	405.69610595703125	2	405.694364	809.374174	0.40487	0.00016425	4.2167	0.0017107	4.6216	0.001875	405.6959569780285	37.226	0.50804	37.226	36.977	37.485	0					22	10	3	0	0	0	0.68312	1	2028	2028		46.766	3.1404	1	232460			2962	2605	2191	2200	4175	4175					-0.038137774798883584
AWAIRGMGAL	10	Unmodified	_AWAIRGMGAL_					0	0	0		ENST00000220751.4_1_8:90769999-90770152:+|nuORF	ENST00000220751.4_1_8:90769999-90770152:+|nuORF	ENST00000220751.4_1_8:90769999-90770152:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.8145751953125	2	523.284211	1044.55387	-0.1618	-8.4668E-05	2.3345	0.0012216	2.1727	0.0011369	523.2852836895693	60.599	0.94594	57.169	56.848	57.794	-3.43					33	18	3	0	0	0	0.027005	1	4167	4167		82.305	10.927	1	225180			2963	9688	2192	2201	4176	4176					0.03337526527934642
AWALLLLTLLT	11	Unmodified	_AWALLLLTLLT_					0	0	0		nc|ENSG00000211660|P01705|IGLV2-23;nc|ENSG00000278196|P01709|IGLV2-8;nc|ENSG00000211664|A0A075B6J9|IGLV2-18;nc|ENSG00000211656|A0A075B6J2|IGLV2-33;nc|ENSG00000211666|P01704|IGLV2-14	nc|ENSG00000211660|P01705|IGLV2-23	nc|ENSG00000211660|P01705|IGLV2-23	MULTI-MSMS	OvCa9_classI_Rep2	2	614.38525390625	2	614.389199	1226.76385	-5.0786	-0.0031202	-1.6877	-0.0010369	-6.7663	-0.0041571	614.387997754013	157.04	0.77016	156.81	156.57	157.34	-0.22696					47	20	3	0	0	0	0.72466	1	15977	15977		19.997	2.5288	1	63796			2964	15287	2193	2202	4177	4177					0.15953467681879374
AWAPKPYHKF	10	Unmodified	_AWAPKPYHKF_					0	0	0		nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1	nc|ENSG00000071054|O95819-4|MAP4K4;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;nc|ENSG00000141503|Q8N4C8-3|MINK1	nc|ENSG00000071054|O95819-4|MAP4K4	MULTI-MSMS	OvCa99_classI_Rep5	1	415.5585021972656	3	415.557348	1243.65021	0.24736	0.00010279	-0.20163	-8.3789E-05	0.045732	1.9004E-05	415.55725308479003	55.579	2.331	55.579	55.064	57.396	0					141	55	6	0	0	0	0.49595	1	4541	4541		54.722	11.072	1	27744000			2965	1444;15064;5729	2194	2203	4178	4178					0.038134173594926324
AWAPKPYHKF	10	Unmodified	_AWAPKPYHKF_					0	0	0		nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1	nc|ENSG00000071054|O95819-4|MAP4K4;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;nc|ENSG00000141503|Q8N4C8-3|MINK1	nc|ENSG00000071054|O95819-4|MAP4K4	MULTI-MSMS	OvCa99_classI_Rep5	1	622.8334350585938	2	622.832383	1243.65021	-0.66526	-0.00041434	0.70792	0.00044092	0.042665	2.6573E-05	622.8326731327369	55.577	0.90494	55.577	55.273	56.178	0					62	21	5	0	0	0	0.12738	1	4547	4547		74.255	0	1	8149300			2966	1444;15064;5729	2194	2203	4179	4179					0.038134173594926324
AWDQGNRK	8	Unmodified	_AWDQGNRK_					0	0	0		nc|ENSG00000119608|Q3B8N5-2|PROX2;nc|ENSG00000119608|Q3B8N5|PROX2;ENSG00000119608|ENST00000556489|PROX2	nc|ENSG00000119608|Q3B8N5-2|PROX2	nc|ENSG00000119608|Q3B8N5-2|PROX2	MULTI-MSMS	OvCa9_classI_Rep2	2	487.7452697753906	2	487.743765	973.472977	2.4472	0.0011936	0.97674	0.0004764	3.4239	0.00167	487.74399401921767	27.829	0.93581	25.12	24.742	25.677	-2.7097					37	20	3	0	0	0	0.74971	1	517	517		26.796	2.5934	1	33068			2967	3373	2195	2204	4180	4180					-0.014820381906133662
AWGVEEKLL	9	Unmodified	_AWGVEEKLL_					0	0	0		ENSG00000188039|ENST00000524140|NWD1;ENST00000438489.6_1_19:16849058-16926137:+|nuORF;nc|ENSG00000188039|Q149M9|NWD1	ENSG00000188039|ENST00000524140|NWD1	ENSG00000188039|ENST00000524140|NWD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.7874755859375	2	522.78985	1043.56515	-2.3661	-0.001237	-1.6948	-0.000886	-4.0608	-0.002123	522.7888401138426	49.836	1.1945	46.695	46.301	47.496	-3.1416					58	22	5	0	0	0	0.27546	1	2843	2843		65.803	4.8312	1	487310			2968	8448	2196	2205	4181	4181					0.04510627103036313
AWIMAILL	8	Unmodified	_AWIMAILL_					0	0	0		tr|A0A553SFV1|A0A553SFV1_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09525PE=4SV=1	tr|A0A553SFV1|A0A553SFV1_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09525PE=4SV=1	tr|A0A553SFV1|A0A553SFV1_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09525PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.7770690917969	2	465.777699	929.540846	-3.3518	-0.0015612	3.167	0.0014751	-0.18478	-8.6067E-05	465.7790622221326	151.79	0.91791	150.35	149.98	150.89	-1.435					37	19	3	0	0	0	0.7543	1	15009	15009		24.504	2.8017	1	51659			2969	33080	2197	2206	4182	4182					0.07325695415829614
AWLLIYLLG	9	Unmodified	_AWLLIYLLG_					0	0	0		ENST00000414624.6_1_11:61645294-61658904:-|nuORF;ENSG00000221968|ENST00000278829|FADS3	ENST00000414624.6_1_11:61645294-61658904:-|nuORF	ENST00000414624.6_1_11:61645294-61658904:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	531.3192749023438	2	531.323328	1060.6321	-4.1781	-0.0022199	-3.6292	-0.0019283	-7.8073	-0.0041482	531.3213445250675	149.82	1.4119	148.87	148.45	149.86	-0.95119					59	27	3	0	0	0	0.68641	1	12705	12705		21.702	4.3374	1	144990			2970	9241	2198	2207	4183	4183					0.10421282384800179
AWMKVARKKHR	11	Unmodified	_AWMKVARKKHR_					0	0	0			REV__ENST00000380637.7_1_21:40834409-40883616:+|nuORF	REV__ENST00000380637.7_1_21:40834409-40883616:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	470.94757080078125	3	470.946952	1409.81903	-0.10608	-4.9957E-05	2.541	0.0011967	2.4349	0.0011467	470.94806579910886	23.14	1.0145	23.14	22.821	23.836	0					50	20	4	0	0	0	0.72516	1	327	327		13.508	1.0751	1	282680	+		2971	25180	2199	2208	4184	4184					0.13050995721346226
AWPCWPPFW	9	Unmodified	_AWPCWPPFW_					0	0	0		chr9:35676389-35679854|90|10.52|0.17|5.99|+|1|CA9,CA9|1;chr9:35676389-35679185|135|12.9|0.38|5.07|+|1|CA9,CA9|1	chr9:35676389-35679854|90|10.52|0.17|5.99|+|1|CA9,CA9|1	chr9:35676389-35679854|90|10.52|0.17|5.99|+|1|CA9,CA9|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.361083984375	2	595.26803	1188.52151	-0.04458	-2.6537E-05	3.0719	0.0018286	3.0273	0.0018021	595.7720298905429	30.251	0.39757	30.251	29.986	30.383	0					13	7	2	0	0	0	0.027462	1	1142	1142		14.664	0	1	42075			2972	556	2200	2209	4185	4185					-0.06521260875092594
AWPGPLTDKI	10	Unmodified	_AWPGPLTDKI_					0	0	0			REV__tr|A0A553SL58|A0A553SL58_NIACI30SribosomalproteinS1OS=NialliacirculansOX=1397GN=rpsAPE=3SV=1	REV__tr|A0A553SL58|A0A553SL58_NIACI30SribosomalproteinS1OS=NialliacirculansOX=1397GN=rpsAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	549.3020629882812	2	549.303124	1096.5917	-0.36233	-0.00019903	0.057917	3.1814E-05	-0.30441	-0.00016721	549.3030294617095	131.39	0.83014	130.27	130.01	130.84	-1.1249					30	16	2	0	0	0	0.74374	1	10469	10469		25.574	0.12388	1	63952	+		2973	30189	2201	2210	4186	4186					0.04726315994344077
AWPLEKQFSQ	10	Unmodified	_AWPLEKQFSQ_					0	0	0			REV__ENSG00000131389|ENST00000622186|SLC6A6	REV__ENSG00000131389|ENST00000622186|SLC6A6	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.7040100097656	3	411.880267	1232.61897	1.0416	0.000429	0.96566	0.00039773	2.0072	0.00082674	411.880936150498	31.45	0.44324	31.45	31.264	31.708	0					12	8	2	0	0	0	0.026843	1	1289	1289		38.754	2.436	1	15035	+		2974	19011	2202	2211	4187	4187					0.011967995347504257
AWPRSLTSI	9	Unmodified	_AWPRSLTSI_					0	0	0		ENST00000583167.5_1_17:45892556-45892844:-|nuORF	ENST00000583167.5_1_17:45892556-45892844:-|nuORF	ENST00000583167.5_1_17:45892556-45892844:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	515.7865600585938	2	515.787641	1029.56073	0.015208	7.8439E-06	-0.61979	-0.00031968	-0.60459	-0.00031184	515.7873046158662	78.2	1.7356	76.46	75.672	77.408	-1.7398					60	30	3	0	0	0	0.18193	1	6519	6519		79.451	2.6769	1	581100			2975	14011	2203	2212	4188	4188					0.04713162680127425
AWPSIRTTV	9	Unmodified	_AWPSIRTTV_					0	0	0		HERVH-int_dup93|chr1:54900195-54903183:-|1.1315455096136964|0.040738276592419|4.8|412.0|109|2|anti-sense;chr1:54901207-54991836|94|10.24|0.0|19.97|+|2|TE_info:HERVH-int,HERVH-int_dup93,ERV1,LTR,donor,-,54900195,54901207|None,TMEM61|15	HERVH-int_dup93|chr1:54900195-54903183:-|1.1315455096136964|0.040738276592419|4.8|412.0|109|2|anti-sense	HERVH-int_dup93|chr1:54900195-54903183:-|1.1315455096136964|0.040738276592419|4.8|412.0|109|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	515.7864990234375	2	515.787641	1029.56073	0.015208	7.8439E-06	-0.61979	-0.00031968	-0.60459	-0.00031184	515.7873046158662	78.2	1.7356	76.46	75.672	77.408	-1.7398					60	30	3	0	0	0	0.42676	1	6525	6525		49.442	3.4896	1	581100			2976	263	2204	2213	4189	4189					0.04713162680127425
AWRGSTTAQL	10	Unmodified	_AWRGSTTAQL_					0	0	0			REV__ENSG00000271447|ENST00000605424|MMP28	REV__ENSG00000271447|ENST00000605424|MMP28	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.7860107421875	2	545.78563	1089.55671	-0.029258	-1.5968E-05	-1.2031	-0.00065662	-1.2323	-0.00067259	545.7847166275907	113.09	1.2198	111.64	111.36	112.58	-1.4461					71	24	5	0	0	0	0.12609	1	10472	10472		107.01	13.864	1	297060	+		2977	23609	2205	2214	4190	4190					0.01551073186396934
AWRSVLPLW	9	Unmodified	_AWRSVLPLW_					0	0	0		nc|ENSG00000112769|Q16363-3|LAMA4;LAMA4|p.D1014Efs*10|1|0.1|ENSG00000112769|chr6:112139820-112139821|-/TCACAGCTAATGATATGGTTCTT|frameshift_variant;nc|ENSG00000112769|Q16363-2|LAMA4;nc|ENSG00000112769|Q16363|LAMA4;ENSG00000112769|ENST00000230538|LAMA4	nc|ENSG00000112769|Q16363-3|LAMA4	nc|ENSG00000112769|Q16363-3|LAMA4	MULTI-MSMS	OvCa9_classI_Rep2	2	564.3226928710938	2	564.321651	1126.62875	3.1763	0.0017924	-0.16431	-9.2725E-05	3.012	0.0016997	564.3213788592631	26.344	0.90757	23.635	23.418	24.326	-2.7097					50	25	3	0	0	0	0.65476	1	370	370		25.45	8.0852	1	124260			2978	2926	2206	2215	4191	4191					0.07050032330812428
AWTFLSALN	9	Unmodified	_AWTFLSALN_					0	0	0		ENST00000533507.5_1_11:47602194-47606030:+|nuORF	ENST00000533507.5_1_11:47602194-47606030:+|nuORF	ENST00000533507.5_1_11:47602194-47606030:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.8141784667969	2	511.768917	1021.52328	-1.1415	-0.00058419	-1.8561	-0.00094991	-2.9976	-0.0015341	511.7671798314732	95.204	1.1558	92.736	92.41	93.566	-2.4685					30	22	2	0	0	0	0.027462	1	8406	8406		44.117	1.7207	1	145880			2979	13342	2207	2216	4192	4192					0.013380714145114325
AWTVVLVTL	9	Unmodified	_AWTVVLVTL_					0	0	0		ENSG00000182393|ENST00000333625|IFNL1	ENSG00000182393|ENST00000333625|IFNL1	ENSG00000182393|ENST00000333625|IFNL1	MULTI-MSMS	OvCa9_classI_Rep2	2	501.30328369140625	2	501.305136	1000.59572	-0.60395	-0.00030276	-2.6332	-0.00132	-3.2371	-0.0016228	501.3036625968001	45.316	1.7944	42.606	42.199	43.993	-2.7097					88	35	4	0	0	0	0.55588	1	2643	2643		37.159	5.2042	1	439250			2980	7998	2208	2217	4193	4193					0.09544405488099983
AWVFIIIKK	9	Unmodified	_AWVFIIIKK_					0	0	0			REV__ENSG00000174417|ENST00000518632|TRHR	REV__ENSG00000174417|ENST00000518632|TRHR	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.3589477539062	2	559.360245	1116.70594	0.44354	0.0002481	-4.4126	-0.0024682	-3.9691	-0.0022201	559.3576984469746	99.145	1.8504	96.82	96.484	98.335	-2.3253					92	35	4	0	0	0	0.50066	1	8862	8862		42.474	1.6963	1	566800	+		2981	21829	2209	2218	4194	4194					0.15225250547132418
AYAENIALL	9	Unmodified	_AYAENIALL_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	OvCa99_classI_Rep5	1	489.2698059082031	2	489.26875	976.522947	1.2654	0.00061913	0.57953	0.00028354	1.845	0.00090268	489.2689278300284	123.11	0.79305	123.11	122.81	123.61	0					36	16	4	0	0	0	0.059253	1	14191	14191		113.41	0	1	504080			2982	8611	2210	2219	4195	4195					0.033746516946507654
AYAENIALL	9	Unmodified	_AYAENIALL_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	489.26875	976.522947	0.56649	0.00027717	-1.2179	-0.00059587	-0.65138	-0.0003187	489.2682339833961	123.69	0.39388	123.46	123.29	123.68	-0.23193	0.17669	-0.0016866	NaN	113.41	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4574.7			2983	8611	2210	2219							0.033746516946507654
AYAIIKEEL	9	Unmodified	_AYAIIKEEL_					0	0	0		ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF	ENSG00000156802|ENST00000287394|ATAD2	ENSG00000156802|ENST00000287394|ATAD2	MULTI-MSMS	OvCa99_classI_Rep5	1	525.2999877929688	2	525.297507	1048.58046	1.4776	0.00077616	0.64788	0.00034033	2.1254	0.0011165	525.2976264764831	92.492	1.1721	92.492	92.174	93.346	0					85	27	5	0	0	0	0.022645	3	9983	9983;10013;10044		143.89	53.11	1	16744000			2984	5857	2211	2220	4196;4197;4198	4196					0.05811493900228015
AYALLSHFL	9	Unmodified	_AYALLSHFL_					0	0	0		nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-2|CD109	nc|ENSG00000156535|Q6YHK3-4|CD109	nc|ENSG00000156535|Q6YHK3-4|CD109	MULTI-MSMS	OvCa99_classI_Rep5	1	517.7880859375	2	517.78711	1033.55967	1.4376	0.00074438	0.60158	0.00031149	2.0392	0.0010559	517.7868777966295	129.37	0.83997	129.37	128.98	129.82	0					59	17	6	0	0	0	0.043206	1	14999	14999		123.99	27.798	1	402740			2985	5848	2212	2221	4199	4199					0.04422948311230357
AYAPPPHVI	9	Unmodified	_AYAPPPHVI_					0	0	0		ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	ENSG00000128335|ENST00000358502|APOL2	MULTI-MSMS	OvCa99_classI_Rep5	1	482.7671203613281	2	482.766178	963.517802	2.2187	0.0010711	-0.19352	-9.3426E-05	2.0251	0.00097767	482.7657736672462	74.972	1.1233	74.972	74.478	75.601	0					79	27	4	0	0	0	0.32242	2	7424	7424;7452		60.404	12.488	1	3964200			2986	3878	2213	2222	4200;4201	4200					0.03458392622712836
AYARRRFF	8	Unmodified	_AYARRRFF_					0	0	0		ENST00000503582.1_1_5:141703720-141703951:-|nuORF	ENST00000503582.1_1_5:141703720-141703951:-|nuORF	ENST00000503582.1_1_5:141703720-141703951:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.8011474609375	2	543.801417	1085.58828	-1.6455	-0.00089484	4.1361	0.0022492	2.4906	0.0013544	543.8035334184938	145.88	0.86865	144.44	144.15	145.02	-1.4357					38	16	3	0	0	0	0.72134	1	14341	14341		39.021	4.849	1	56315			2987	12863	2214	2223	4202	4202					0.048911107310459556
AYATHPFKF	9	Unmodified	_AYATHPFKF_					0	0	0		nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7;nc|ENSG00000111912|Q8NI08-5|NCOA7	nc|ENSG00000111912|Q8NI08-7|NCOA7	nc|ENSG00000111912|Q8NI08-7|NCOA7	MULTI-MSMS	OvCa99_classI_Rep5	1	541.2783203125	2	541.276909	1080.53927	-0.2015	-0.00010907	0.52746	0.0002855	0.32596	0.00017644	541.2771073374446	71.287	1.0021	71.287	70.954	71.956	0					37	24	2	0	0	0	0.012163	1	6880	6880		161.9	71.122	1	13961000			2988	2867	2215	2224	4203	4203					0.0022177765142714634
AYAVNTFLAV	10	Unmodified	_AYAVNTFLAV_					0	0	0		MACF1-CMTM4|1|fusion;MACF1-CMTM4|2|fusion;nc|ENSG00000183723|Q8IZR5-3|CMTM4;ENSG00000183723|ENST00000394106|CMTM4;nc|ENSG00000183723|Q8IZR5|CMTM4	MACF1-CMTM4|1|fusion	MACF1-CMTM4|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	534.7915649414062	2	534.78985	1067.56515	3.0352	0.0016232	0.018347	9.812E-06	3.0536	0.001633	534.7896759823677	56.343	2.6096	53.193	52.451	55.06	-3.1504					179	83	3	0	0	0	0.62299	1	1623	1623		39.253	8.7492	1	87189			2989	14812	2216	2225	4204	4204					0.034066271030496864
AYCVLGVDSL	10	Unmodified	_AYCVLGVDSL_					0	0	0		ENST00000326005.10_1_15:64980692-64980890:-|nuORF	ENST00000326005.10_1_15:64980692-64980890:-|nuORF	ENST00000326005.10_1_15:64980692-64980890:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.77783203125	2	520.260068	1038.50558	-0.12167	-6.3299E-05	-4.4795	-0.0023305	-4.6012	-0.0023938	520.2585903935783	98.415	1.2386	96.655	96.211	97.45	-1.7595					54	23	3	0	0	0	0.026822	1	6530	6530		38.806	13.232	1	125460			2990	10405	2217	2226	4205	4205					-0.012130119026323882
AYEAKQLEALK	11	Unmodified	_AYEAKQLEALK_					0	0	0			REV__ENSG00000167971|ENST00000343516|CASKIN1	REV__ENSG00000167971|ENST00000343516|CASKIN1	MULTI-MSMS	OvCa9_classI_Rep3	3	632.3524169921875	2	632.350803	1262.68705	-0.26122	-0.00016518	-0.78808	-0.00049834	-1.0493	-0.00066352	632.3502430520261	100.24	0.52068	98.636	98.377	98.898	-1.6053					29	10	3	0	0	0	0.25285	1	6787	6787		72.879	10.772	1	506800	+		2991	21324	2218	2227	4206	4206					0.06621624394733772
AYEAKQLEALK	11	Unmodified	_AYEAKQLEALK_					0	0	0			REV__ENSG00000167971|ENST00000343516|CASKIN1	REV__ENSG00000167971|ENST00000343516|CASKIN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	632.351806640625	2	632.350803	1262.68705	-0.81799	-0.00051726	0.91981	0.00058164	0.10182	6.4386E-05	632.3512790362679	100.73	0.69672	98.465	98.187	98.883	-2.2665					42	13	5	0	0	0	0.24327	1	9028	9028		74.165	14.234	1	547900	+		2992	21324	2218	2227	4207	4207					0.06621624394733772
AYEERQRHWQR	11	Unmodified	_AYEERQRHWQR_					0	0	0		ENSG00000107816|ENST00000454422|LZTS2	ENSG00000107816|ENST00000454422|LZTS2	ENSG00000107816|ENST00000454422|LZTS2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.32275390625	3	520.258912	1557.75491	-0.055595	-2.8924E-05	3.4077	0.0017729	3.3521	0.001744	520.2605948262537	59.734	0.73652	56.342	56.1	56.837	-3.392					27	14	3	0	0	0	0.026497	1	4054	4054		6.001	0	1	34459			2993	2618	2219	2228	4208	4208					-0.0016611290186574479
AYFARLDL	8	Unmodified	_AYFARLDL_					0	0	0			REV__ENST00000559005.2_1_14:24612620-24612898:-|nuORF	REV__ENST00000559005.2_1_14:24612620-24612898:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.8276672363281	2	484.763635	967.512717	-0.0015638	-7.5805E-07	2.2059	0.0010693	2.2043	0.0010686	484.7651747374189	78.368	0.43234	75.551	75.263	75.696	-2.8165					10	8	2	0	0	0	0.028476	1	6281	6281		52.299	7.7681	1	13953	+		2994	17458	2220	2229	4209	4209					0.027660887600859496
AYFQSMVENSH	11	Unmodified	_AYFQSMVENSH_					0	0	0			REV__ENST00000569504.5_1_16:67859786-67861483:+|nuORF	REV__ENST00000569504.5_1_16:67859786-67861483:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	438.7570495605469	3	438.192405	1311.55539	0.71031	0.00031125	-2.3991	-0.0010513	-1.6888	-0.00074002	438.19143084334206	60.218	0.1981	60.218	60.079	60.277	0					5	4	2	0	0	0	0.025378	1	5239	5239		29.551	0	1	93060	+		2995	17579	2221	2230	4210	4210					-0.08792928964635394
AYFRREGL	8	Unmodified	_AYFRREGL_					0	0	0		nc|ENSG00000110074|Q96CU9-3|FOXRED1;ENSG00000110074|ENST00000263578|FOXRED1;ENST00000525083.5_1_11:126145223-126146937:+|nuORF;nc|ENSG00000110074|Q96CU9-2|FOXRED1	nc|ENSG00000110074|Q96CU9-3|FOXRED1	nc|ENSG00000110074|Q96CU9-3|FOXRED1	MULTI-MSMS	OvCa9_classI_Rep3	3	506.2735595703125	2	506.272158	1010.52976	1.7132	0.00086734	1.5295	0.00077434	3.2427	0.0016417	506.2727467608177	54.771	2.6321	51.6	50.779	53.411	-3.1715					173	88	3	0	0	0	0.73288	2	1386	1386;1418		35.201	3.2459	1	154000			2996	2753	2222	2231	4211;4212	4211					0.024920093659034137
AYFTQKGLE	9	Unmodified	_AYFTQKGLE_					0	0	0		tr|A0A553SF62|A0A553SF62_NIACISodium/prolinesymporterOS=NialliacirculansOX=1397GN=putPPE=3SV=1	tr|A0A553SF62|A0A553SF62_NIACISodium/prolinesymporterOS=NialliacirculansOX=1397GN=putPPE=3SV=1	tr|A0A553SF62|A0A553SF62_NIACISodium/prolinesymporterOS=NialliacirculansOX=1397GN=putPPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.8071899414062	2	528.771657	1055.52876	-3.3024	-0.0017462	-3.005	-0.001589	-6.3074	-0.0033352	528.7709048533993	88.342	0.25359	85.739	85.578	85.832	-2.6027					6	4	2	0	0	0	0.027462	1	7520	7520		38.806	5.2906	1	10756			2997	32995	2223	2232	4213	4213					0.003217502063534994
AYGFVARI	8	Unmodified	_AYGFVARI_					0	0	0		VWF|p.D2509Gfs*24|1|0.03|ENSG00000110799|chr12:5971621-5971622|-/C|frameshift_variant;ENSG00000110799|ENST00000261405|VWF;VWF|p.C321Ffs*136|1|0.03|ENSG00000110799|chr12:6073654-6073654|C/-|frameshift_variant;VWF|p.K704Afs*38|1|0.07|ENSG00000110799|chr12:6052620-6052621|-/CA|frameshift_variant;ENST00000321023.5_1_12:6204574-6232125:-|nuORF;nc|ENSG00000110799|P04275-2|VWF	VWF|p.D2509Gfs*24|1|0.03|ENSG00000110799|chr12:5971621-5971622|-/C|frameshift_variant	VWF|p.D2509Gfs*24|1|0.03|ENSG00000110799|chr12:5971621-5971622|-/C|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	448.7544250488281	2	448.75307	895.491587	2.1197	0.00095124	0.42955	0.00019276	2.5493	0.001144	448.7530742095382	92.406	0.87582	92.406	92.092	92.968	0					44	20	4	0	0	0	0.37872	2	9994	9967;9994		92.191	29.212	1	3053000			2998	2794	2224	2233	4214;4215	4215					0.03966123451232306
AYGGKSLLQQ	10	Unmodified	_AYGGKSLLQQ_					0	0	0		tr|A0A553SNA1|A0A553SNA1_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24080PE=4SV=1	tr|A0A553SNA1|A0A553SNA1_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24080PE=4SV=1	tr|A0A553SNA1|A0A553SNA1_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24080PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.7717895507812	2	532.790381	1063.56621	-0.028492	-1.518E-05	1.0082	0.00053714	0.97968	0.00052196	532.7909226888218	64.544	0.37661	64.544	64.417	64.793	0					16	8	3	0	0	0	0.026802	1	5902	5902		51.335	14.176	1	412300			2999	33911	2225	2234	4216	4216					0.03696841471969492
AYGHFSYEF	9	Unmodified	_AYGHFSYEF_					0	0	0		ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1;ENSG00000073331|ENST00000650871|ALPK1	ENST00000504745.1_1_4:113347516-113362363:+|nuORF	ENST00000504745.1_1_4:113347516-113362363:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	560.7416381835938	2	560.740357	1119.46616	3.1616	0.0017728	-0.73358	-0.00041135	2.428	0.0013615	560.7398607194596	96.105	1.0524	96.105	95.785	96.838	0					62	24	4	0	0	0	0.073432	2	10500	10500;10528		105.27	11.262	1	6572800			3000	1491	2226	2235	4217;4218	4217					-0.08879395861845296
AYGIDSLF	8	Unmodified	_AYGIDSLF_					0	0	0		ACTR5|p.Q306Rfs*29|1|0.16|ENSG00000101442|chr20:38755097-38755097|C/-|frameshift_variant;ACTR5|p.D388Afs*22|1|0.07|ENSG00000101442|chr20:38756026-38756026|A/-|frameshift_variant;ENSG00000101442|ENST00000243903|ACTR5	ACTR5|p.Q306Rfs*29|1|0.16|ENSG00000101442|chr20:38755097-38755097|C/-|frameshift_variant	ACTR5|p.Q306Rfs*29|1|0.16|ENSG00000101442|chr20:38755097-38755097|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.6031188964844	2	443.221268	884.427984	-1.2229	-0.00054203	-3.1259	-0.0013855	-4.3489	-0.0019275	443.21991768709967	50.833	0.87486	47.659	47.047	47.922	-3.1734					27	16	3	0	0	0	0.028476	1	2909	2909		37.028	0	1	17027			3001	25	2227	2236	4219	4219					-0.018852817765150576
AYGKDFHLI	9	Unmodified	_AYGKDFHLI_					0	0	0		nc|ENSG00000198160|Q8N108-19|MIER1;nc|ENSG00000198160|Q8N108-16|MIER1;nc|ENSG00000198160|Q8N108-14|MIER1;nc|ENSG00000198160|Q8N108-18|MIER1;nc|ENSG00000198160|Q8N108-17|MIER1;nc|ENSG00000198160|Q8N108-15|MIER1;nc|ENSG00000198160|Q8N108|MIER1;nc|ENSG00000198160|Q8N108-13|MIER1;ENSG00000198160|ENST00000401041|MIER1	nc|ENSG00000198160|Q8N108-19|MIER1	nc|ENSG00000198160|Q8N108-19|MIER1	MULTI-MSMS	OvCa99_classI_Rep5	1	532.2835693359375	2	532.282192	1062.54983	0.83297	0.00044337	1.2649	0.00067329	2.0979	0.0011167	532.2828100541288	81.059	1.3572	81.059	80.744	82.101	0					69	31	4	0	0	0	0.14855	2	8344	8323;8344		85.161	13.283	1	16919000			3002	8791	2228	2237	4220;4221	4221					0.021057603058579843
AYGLPVSIL	9	Unmodified	_AYGLPVSIL_					0	0	0			REV__tr|A0A7D6ZE96|A0A7D6ZE96_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12805PE=4SV=1	REV__tr|A0A7D6ZE96|A0A7D6ZE96_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12805PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.781494140625	2	466.776211	931.537869	-0.67337	-0.00031431	2.7041	0.0012622	2.0307	0.00094788	466.77706678764997	44.373	0.44736	44.373	44.215	44.662	0					15	9	2	0	0	0	0.027462	1	2987	2987		20.482	0	1	193840	+		3003	31942	2229	2238	4222	4222					0.06936143562666075
AYGLRTSR	8	Unmodified	_AYGLRTSR_					0	0	0		ENST00000399138.4_1_17:18088317-18110139:+|nuORF	ENST00000399138.4_1_17:18088317-18110139:+|nuORF	ENST00000399138.4_1_17:18088317-18110139:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.9381408691406	2	462.256508	922.498464	-1.5987	-0.00073902	0.8488	0.00039236	-0.74991	-0.00034665	462.25697379901015	44.952	0.93347	41.914	41.714	42.647	-3.0385					28	17	3	0	0	0	0.028476	1	2269	2269		38.806	6.8513	1	50755			3004	11381	2230	2239	4223	4223					0.03411436331816731
AYGLVLFVGLF	11	Unmodified	_AYGLVLFVGLF_					0	0	0		tr|A0A553STR0|A0A553STR0_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05475PE=3SV=1	tr|A0A553STR0|A0A553STR0_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05475PE=3SV=1	tr|A0A553STR0|A0A553STR0_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05475PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.25439453125	3	400.23387	1197.67978	1.1705	0.00046846	1.7393	0.00069612	2.9097	0.0011646	400.2347850752501	69.46	0.52824	69.46	69.228	69.756	0					16	12	2	0	0	0	0.025652	1	6629	6629		33.922	11.36	1	336040			3005	34519	2231	2240	4224	4224					0.0888493658499101
AYGWILVSSI	10	Unmodified	_AYGWILVSSI_					0	0	0			REV__GDF9|p.E41Vfs*26|1|0.44|ENSG00000164404|chr5:132864412-132864413|-/AGAACACTTGAGATTAAAAACAGATGCTCTAAAA|frameshift_variant	REV__GDF9|p.E41Vfs*26|1|0.44|ENSG00000164404|chr5:132864412-132864413|-/AGAACACTTGAGATTAAAAACAGATGCTCTAAAA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	554.80810546875	2	554.8055	1107.59645	1.6446	0.00091244	2.8815	0.0015987	4.5261	0.0025111	554.8069567094944	79.349	2.1187	79.349	78.54	80.659	0					119	51	4	0	0	0	0.43592	1	8117	8117		63.306	1.1989	1	5170200	+		3006	28153	2232	2241	4225	4225					0.04695200137143729
AYIERMNYI	9	Unmodified	_AYIERMNYI_					0	0	0		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1;ENST00000471959.2_1_6:111995672-112015899:-|nuORF	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-MSMS	OvCa99_classI_Rep5	1	586.7939453125	2	586.792066	1171.56958	2.2815	0.0013388	0.39648	0.00023265	2.678	0.0015714	586.7921684496706	91.69	1.047	91.69	91.296	92.343	0					67	24	4	0	0	0	0.059253	2	9899	9875;9899		113.41	19.405	1	5631900			3007	949	2233	2242	4226;4227	4227					-0.009342317456912497
AYINRASLL	9	Unmodified	_AYINRASLL_					0	0	0		nc|ENSG00000138663|Q9BT78-2|COPS4;ENSG00000138663|ENST00000264389|COPS4	nc|ENSG00000138663|Q9BT78-2|COPS4	nc|ENSG00000138663|Q9BT78-2|COPS4	MULTI-MSMS	OvCa99_classI_Rep5	1	510.7959899902344	2	510.795466	1019.57638	2.0854	0.0010652	-0.24455	-0.00012491	1.8408	0.00094028	510.79520819262336	85.564	1.0712	85.564	84.923	85.994	0					56	25	4	0	0	0	0.11471	1	8976	8976		93.195	21.818	1	2809500			3008	4708	2234	2243	4228	4228					0.06737449197191836
AYISKKLEF	9	Unmodified	_AYISKKLEF_					0	0	0		tr|A0A7D6VZW1|A0A7D6VZW1_9CLOTGlycine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=glyQSPE=3SV=1	tr|A0A7D6VZW1|A0A7D6VZW1_9CLOTGlycine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=glyQSPE=3SV=1	tr|A0A7D6VZW1|A0A7D6VZW1_9CLOTGlycine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=glyQSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	549.8130493164062	2	549.813325	1097.6121	1.0303	0.00056648	-0.98798	-0.0005432	0.042341	2.3279E-05	549.8125885922184	125.67	1.4812	125.43	125.11	126.59	-0.2359					60	29	3	0	0	0	0.59259	1	12253	12253		32.812	0.85756	1	84391			3009	35366	2235	2244	4229	4229					0.06719486654174034
AYKDAIYVF	9	Unmodified	_AYKDAIYVF_					0	0	0		ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENSG00000099949|ENST00000646124|LZTR1;CRKL-LZTR1|1|fusion	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.2850952148438	2	545.2844	1088.55425	-1.1222	-0.00061192	1.102	0.00060091	-0.020188	-1.1008E-05	545.2849999034833	106.28	1.338	104.27	103.7	105.03	-2.0161					58	25	4	0	0	0	0.18193	1	9671	9671		79.451	19.157	1	281090			3010	680	2236	2245	4230	4230					0.013512247287508217
AYKDAIYVF	9	Unmodified	_AYKDAIYVF_					0	0	0		ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENSG00000099949|ENST00000646124|LZTR1;CRKL-LZTR1|1|fusion	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	545.2844	1088.55425	-0.67522	-0.00036819	0.56117	0.000306	-0.11405	-6.219E-05	545.2846424538834	104.81	1.1883	104.24	103.97	105.16	-0.57639	-0.024982	8.8378E-05	NaN	79.451	75	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236900			3011	680	2236	2245							0.013512247287508217
AYKDAIYVF	9	Unmodified	_AYKDAIYVF_					0	0	0		ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENSG00000099949|ENST00000646124|LZTR1;CRKL-LZTR1|1|fusion	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	545.2844	1088.55425	0.21741	0.00011855	-0.32746	-0.00017856	-0.11005	-6.0007E-05	545.2840220765399	105.63	1.2497	104.28	103.94	105.19	-1.3482	0.019419	-0.00088073	NaN	79.451	49	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	270900			3012	680	2236	2245							0.013512247287508217
AYKKTHETL	9	Unmodified	_AYKKTHETL_					0	0	0		nc|ENSG00000111907|Q16890-4|TPD52L1;nc|ENSG00000111907|Q16890-3|TPD52L1;nc|ENSG00000111907|Q16890-2|TPD52L1;ENST00000392483.6_1_6:125475019-125569560:+|nuORF;nc|ENSG00000111907|Q16890-5|TPD52L1;ENST00000532978.5_1_6:125475518-125573183:+|nuORF;ENSG00000111907|ENST00000534000|TPD52L1	nc|ENSG00000111907|Q16890-4|TPD52L1	nc|ENSG00000111907|Q16890-4|TPD52L1	MULTI-MSMS	OvCa99_classI_Rep5	1	545.7981567382812	2	545.798206	1089.58186	-0.94259	-0.00051446	0.51733	0.00028236	-0.42526	-0.00023211	545.7983923902312	28.166	0.64727	28.166	27.991	28.638	0					32	12	3	0	0	0	0.059253	1	898	898		113.41	28.496	1	879210			3013	2865	2237	2246	4231	4231					0.04065127988997119
AYLARVKA	8	Unmodified	_AYLARVKA_					0	0	0		ENSG00000132688|ENST00000368223|NES;NES|p.V1249Gfs*6|1|0.06|ENSG00000132688|chr1:156670442-156670443|-/C|frameshift_variant	ENSG00000132688|ENST00000368223|NES	ENSG00000132688|ENST00000368223|NES	MULTI-SECPEP	OvCa9_classI_Rep3	3	445.9021911621094	2	446.27417	890.533787	0.53718	0.00023973	-1.3499	-0.00060243	-0.81272	-0.00036269	446.27335357468087	79.669	0.35745	77.329	77.206	77.563	-2.3399					10	6	2	0	0	0	0.028476	1	4317	4317		13.775	0	1	8010.3			3014	4164	2238	2247	4232	4232					0.08414098859600472
AYLDKSPQF	9	Unmodified	_AYLDKSPQF_					0	0	0		ENSG00000067248|ENST00000251636|DHX29;DHX29|p.G1201Dfs*33|1|0.04|ENSG00000067248|chr5:55262856-55262857|-/GTAAT|frameshift_variant;ENST00000504778.5_1_5:54552318-54579000:-|nuORF;ENST00000513447.1_1_5:54569247-54572159:-|nuORF	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	MULTI-MSMS	OvCa99_classI_Rep5	1	534.7720947265625	2	534.771657	1067.52876	1.8754	0.0010029	-0.20174	-0.00010788	1.6737	0.00089503	534.7713643980892	79.606	0.92269	79.606	79.352	80.274	0					53	22	4	0	0	0	0.046778	1	8125	8125		120.87	35.953	1	3404500			3015	1373	2239	2248	4233	4233					-0.0023024979368528875
AYLEAHETF	9	Unmodified	_AYLEAHETF_					0	0	0		ENSG00000111581|ENST00000229179|NUP107;nc|ENSG00000111581|P57740-3|NUP107;nc|ENSG00000111581|P57740-2|NUP107	ENSG00000111581|ENST00000229179|NUP107	ENSG00000111581|ENST00000229179|NUP107	MULTI-MSMS	OvCa99_classI_Rep5	1	540.7545166015625	2	540.753464	1079.49238	1.7442	0.0009432	-0.37935	-0.00020513	1.3649	0.00073807	540.7536361240926	78.789	1.2725	78.789	77.968	79.24	0					75	30	5	0	0	0	0.098892	1	8020	8020		97.473	22.956	1	8625500			3016	2830	2240	2249	4234	4234					-0.0441912669039084
AYLEAIHNF	9	Unmodified	_AYLEAIHNF_					0	0	0		GANC-AP2S1|1|fusion;ENSG00000042753|ENST00000263270|AP2S1	GANC-AP2S1|1|fusion	GANC-AP2S1|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	539.2730712890625	2	539.271824	1076.5291	2.4315	0.0013113	0.25951	0.00013995	2.691	0.0014512	539.2718646631797	97.939	0.5931	97.939	97.654	98.247	0					38	13	4	0	0	0	0.070405	2	10765	10765;10793		107.01	13.812	1	4074500			3017	1125	2241	2250	4235;4236	4235					-0.006108300738333128
AYLEAYKEF	9	Unmodified	_AYLEAYKEF_					0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	MULTI-MSMS	OvCa99_classI_Rep5	1	567.2816162109375	2	567.279315	1132.54408	2.8173	0.0015982	0.20033	0.00011364	3.0176	0.0017119	567.2793453893515	94.181	0.59386	94.181	93.923	94.517	0					32	13	3	0	0	0	0.046778	1	10246	10246		120.87	54.439	1	1962200			3018	4749	2242	2251	4237	4237					-0.01689382996482891
AYLENRVRPL	10	Unmodified	_AYLENRVRPL_					0	0	0		nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	411.8844909667969	3	410.903295	1229.68806	-0.74129	-0.0003046	0.70947	0.00029152	-0.031822	-1.3076E-05	411.2374439137085	49.216	0.6804	46.074	45.519	46.2	-3.1416					19	12	2	0	0	0	0.027117	1	2739	2739		11.097	0	1	13392			3019	6448	2243	2252	4238	4238					0.08239883554324479
AYLHGLFME	9	Unmodified	_AYLHGLFME_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2542724609375	2	540.762778	1079.511	2.0802	0.0011249	3.2001	0.0017305	5.2803	0.0028554	540.7642834693839	78.235	0.86623	78.235	77.884	78.75	0					56	20	3	0	0	0	0.027255	1	7992	7992		79.939	0	1	4683800			3020	2511	2244	2253	4239	4239					-0.025572883201675722
AYLHTTTTF	9	Unmodified	_AYLHTTTTF_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;nc|ENSG00000108846|O15438-5|ABCC3	ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-5|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	OvCa99_classI_Rep5	1	527.7652587890625	2	527.763832	1053.51311	1.9364	0.001022	0.098525	5.1998E-05	2.0349	0.001074	527.7637503980284	76.496	0.72315	76.496	76.199	76.922	0					47	17	4	0	0	0	0.071436	2	7663	7663;7693		106.42	21.333	1	4970300			3021	2682;14949	2245	2254	4240;4241	4240					-0.011505363107289668
AYLKAIVLF	9	Unmodified	_AYLKAIVLF_					0	0	0		ENST00000475707.5_1_3:15045421-15079667:+|nuORF;ENSG00000177463|ENST00000425241|NR2C2;nc|ENSG00000177463|P49116-2|NR2C2;ENST00000552484.1_1_12:95422157-95422295:-|nuORF;ENST00000547594.5_1_12:95420624-95451409:-|nuORF;ENSG00000120798|ENST00000333003|NR2C1	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	519.324951171875	2	519.323328	1036.6321	1.4716	0.00076423	0.21701	0.0001127	1.6886	0.00087693	519.3232799038722	128.71	2.9207	128.71	128.32	131.25	0					127	61	3	0	0	0	0.048552	6	14921	14898;14921;14946;14970;14994;15029		119.56	71.641	1	2004500			3022	7683	2246	2255	4242;4243;4244;4245;4246;4247	4243					0.11525282384764068
AYLKFLDQF	9	Unmodified	_AYLKFLDQF_					0	0	0		nc|ENSG00000262664|Q8WZ82|OVCA2;ENST00000263083.10_1_17:1944800-1946395:+|nuORF;ENST00000571710.5_1_17:1945525-1946395:+|nuORF	nc|ENSG00000262664|Q8WZ82|OVCA2	nc|ENSG00000262664|Q8WZ82|OVCA2	MULTI-MSMS	OvCa99_classI_Rep5	1	572.807861328125	2	572.8055	1143.59645	1.7383	0.00099569	0.43206	0.00024749	2.1703	0.0012432	572.8054815491915	128.4	0.61005	128.4	128.14	128.75	0					29	12	3	0	0	0	0.13504	1	14876	14876		87.696	7.9839	1	414100			3023	9906	2247	2256	4248	4248					0.03039200137118314
AYLLNLNHL	9	Unmodified	_AYLLNLNHL_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	OvCa99_classI_Rep5	1	535.8045654296875	2	535.803291	1069.59203	0.049748	2.6655E-05	1.6024	0.00085856	1.6521	0.00088521	535.8044245071708	114.49	0.86964	114.49	114.01	114.88	0					47	18	4	0	0	0	0.018995	2	13062	13062;13084		148.21	52.391	1	1098000			3024	1368	2248	2257	4249;4250	4249					0.06001735714221468
AYLPEWKENI	10	Unmodified	_AYLPEWKENI_					0	0	0		nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MULTI-MSMS	OvCa99_classI_Rep5	1	631.825439453125	2	631.824421	1261.63429	0.070916	4.4807E-05	-0.94724	-0.00059849	-0.87632	-0.00055368	631.8237696471963	104.76	0.77314	104.76	104.49	105.27	0					34	17	3	0	0	0	0.28422	1	11747	11747		82.75	15.257	1	2328900			3025	8817	2249	2258	4251	4251					0.01393666331955501
AYLPKILQI	9	Unmodified	_AYLPKILQI_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	OvCa99_classI_Rep5	1	529.8359985351562	2	529.83406	1057.65357	1.0872	0.00057606	0.93083	0.00049319	2.0181	0.0010692	529.8344333035827	124.54	0.78488	124.54	124.15	124.93	0					36	16	3	0	0	0	0.34496	1	14369	14369		57.811	0	1	658780			3026	3453	2250	2259	4252	4252					0.12704667413527204
AYLPLRVIV	9	Unmodified	_AYLPLRVIV_					0	0	0			REV__ENSG00000154237|ENST00000388948|LRRK1	REV__ENSG00000154237|ENST00000388948|LRRK1	MULTI-MSMS	OvCa99_classI_Rep5	1	522.3359375	2	522.334227	1042.6539	0.89874	0.00046944	1.353	0.00070671	2.2517	0.0011762	522.3348099847174	138.63	1.0126	138.63	138.26	139.27	0					47	20	3	0	0	0	0.44294	1	16180	16180		47.916	0.25827	1	402470	+		3027	20369	2251	2260	4253	4253					0.13428087133365807
AYLPVNESFGF	11	Unmodified	_AYLPVNESFGF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;GNB2-EEF2|1|fusion	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OvCa99_classI_Rep5	1	622.3060302734375	2	622.303321	1242.59209	0.99381	0.00061845	1.6117	0.001003	2.6055	0.0016214	622.3040647667677	144.09	0.88556	144.09	143.66	144.55	0					53	17	6	0	0	0	0.52842	2	16835	16835;16855		51.193	14.384	1	354160			3028	6826	2252	2261	4254;4255	4254					-0.01950309076460144
AYLSGMLRF	9	Unmodified	_AYLSGMLRF_					0	0	0		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;SRP68|p.H201N|1|0.17|ENSG00000167881|chr17:76061535-76061535|G/T|missense_variant;ENST00000587864.1_1_17:74057571-74060203:-|nuORF	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	MULTI-MSMS	OvCa99_classI_Rep5	1	529.2828369140625	2	529.278595	1056.54264	1.3481	0.00071354	0.76685	0.00040588	2.115	0.0011194	529.2787968085114	119.08	0.7573	119.08	118.77	119.52	0					43	16	4	0	0	0	0.083631	2	13647	13647;13669		101.6	27.346	1	873710			3029	6846	2253	2262	4256;4257	4256					0.016627044337838015
AYLYPQLRLLH	11	Unmodified	_AYLYPQLRLLH_					0	0	0			REV__ENST00000512003.7_1_5:109946270-109963572:-|nuORF	REV__ENST00000512003.7_1_5:109946270-109963572:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	462.93701171875	3	462.934595	1385.78196	0.079191	3.666E-05	4.2837	0.0019831	4.3629	0.0020197	462.9367014144655	44.408	4.3763	41.698	41.303	45.679	-2.7097					263	87	6	0	0	0	0.69735	1	2695	2695		30.569	7.191	1	4456400	+		3030	22622	2254	2263	4258	4258					0.10449602656603929
AYMPHTFFI	9	Unmodified	_AYMPHTFFI_					0	0	0		nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-2|OGT	nc|ENSG00000147162|O15294-2|OGT	MULTI-MSMS	OvCa99_classI_Rep5	1	563.7749633789062	2	563.773145	1125.53174	2.4585	0.001386	0.51802	0.00029204	2.9765	0.0016781	563.7731254663556	120.31	0.73888	120.31	120	120.74	0					43	17	4	0	0	0	0.043206	2	13834	13811;13834		123.99	49.734	1	4779400			3031	5337	2255	2264	4259;4260	4260					-0.026006979405110542
AYMREHNQL	9	Unmodified	_AYMREHNQL_					0	0	0		ENSG00000136235|ENST00000258733|GPNMB;nc|ENSG00000136235|Q14956|GPNMB	ENSG00000136235|ENST00000258733|GPNMB	ENSG00000136235|ENST00000258733|GPNMB	MULTI-MSMS	OvCa99_classI_Rep5	1	581.2772827148438	2	581.277115	1160.53968	-0.70598	-0.00041037	0.43538	0.00025308	-0.2706	-0.00015729	581.2773723871043	41.172	0.79633	41.172	40.969	41.766	0					31	17	2	0	0	0	0.3076	1	2548	2548		62.107	12.083	1	1291100			3032	4473	2256	2265	4261	4261					-0.03417170691045612
AYNPMARDLF	10	Unmodified	_AYNPMARDLF_					0	0	0		ENSG00000198793|ENST00000361445|MTOR;MTOR|p.L2016Tfs*10|1|0.16|ENSG00000198793|chr1:11127794-11127795|-/T|frameshift_variant	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-MSMS	OvCa99_classI_Rep5	1	599.2905883789062	2	599.289691	1196.56483	2.5453	0.0015254	-0.069311	-4.1537E-05	2.476	0.0014838	599.2894756259034	102.82	0.67346	102.82	102.59	103.26	0					33	15	3	0	0	0	0.33877	1	11478	11478		76.17	24.642	1	2761300			3033	8874	2257	2266	4262	4262					-0.02559115888470842
AYNPVTHQL	9	Unmodified	_AYNPVTHQL_					0	0	0		ENST00000525625.1_1_11:125884983-125893371:-|nuORF;ENSG00000064309|ENST00000531738|CDON;nc|ENSG00000064309|Q4KMG0|CDON	ENST00000525625.1_1_11:125884983-125893371:-|nuORF	ENST00000525625.1_1_11:125884983-125893371:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	521.770751953125	2	521.769448	1041.52434	-0.19155	-9.9944E-05	0.015762	8.2239E-06	-0.17579	-9.172E-05	521.7692686762181	66.718	0.60332	66.718	66.452	67.055	0					25	14	2	0	0	0	0.064985	1	6203	6203		110.12	40.492	1	2489000			3034	1297	2258	2267	4263	4263					0.005242857834218739
AYNQGYLFR	9	Unmodified	_AYNQGYLFR_					0	0	0			REV__ENSG00000122484|ENST00000610020|RPAP2	REV__ENSG00000122484|ENST00000610020|RPAP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.8067626953125	2	566.282723	1130.55089	2.0235	0.0011459	1.9844	0.0011237	4.0079	0.0022696	566.283940516841	93.739	0.20914	93.739	93.632	93.841	0					6	4	2	0	0	0	0.027462	1	10180	10180		30.504	0	1	166640	+		3035	18601	2259	2268	4264	4264					-0.009160253252503026
AYPEYLITY	9	Unmodified	_AYPEYLITY_					0	0	0		ENSG00000107854|ENST00000371627|TNKS2;ENSG00000173273|ENST00000310430|TNKS	ENSG00000107854|ENST00000371627|TNKS2	ENSG00000107854|ENST00000371627|TNKS2	MULTI-MSMS	OvCa9_classI_Rep2	2	566.7804565429688	2	566.78169	1131.54883	0.55298	0.00031342	-0.56556	-0.00032055	-0.01258	-7.1304E-06	566.7812044217159	126.11	1.0847	125.88	125.55	126.64	-0.2359					58	21	4	0	0	0	0.48324	3	12295	12295;12300;12305		44.117	13.613	1	188320			3036	2619	2260	2269	4265;4266;4267	4265					-0.011684988537126628
AYPEYLITY	9	Unmodified	_AYPEYLITY_					0	0	0		ENSG00000107854|ENST00000371627|TNKS2;ENSG00000173273|ENST00000310430|TNKS	ENSG00000107854|ENST00000371627|TNKS2	ENSG00000107854|ENST00000371627|TNKS2	MULTI-MSMS	OvCa9_classI_Rep3	3	566.7802734375	2	566.78169	1131.54883	1.0775	0.0006107	-0.91865	-0.00052067	0.15884	9.0029E-05	566.781045142746	126.83	1.0963	125.76	125.49	126.59	-1.0715					44	20	3	0	0	0	0.50149	3	9925	9919;9925;9932		42.396	10.866	1	237160			3037	2619	2260	2269	4268;4269;4270	4269					-0.011684988537126628
AYPEYLITY	9	Unmodified	_AYPEYLITY_					0	0	0		ENSG00000107854|ENST00000371627|TNKS2;ENSG00000173273|ENST00000310430|TNKS	ENSG00000107854|ENST00000371627|TNKS2	ENSG00000107854|ENST00000371627|TNKS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.780029296875	2	566.78169	1131.54883	-0.626	-0.00035481	0.68527	0.0003884	0.059267	3.3592E-05	566.7818721264231	127.12	1.1018	125.68	125.34	126.45	-1.4357					66	21	5	0	0	0	0.50149	1	12119	12119		42.396	2.338	1	227200			3038	2619	2260	2269	4271	4271					-0.011684988537126628
AYPHNLMTF	9	Unmodified	_AYPHNLMTF_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	OvCa99_classI_Rep5	1	547.262451171875	2	547.260402	1092.50625	1.5934	0.00087201	0.32293	0.00017673	1.9163	0.0010487	547.2605654749026	98.143	0.81544	98.143	97.78	98.596	0					82	18	6	0	0	0	0.010619	3	10810	10780;10810;10841		166.78	46.162	1	26750000			3039	1368	2261	2270	4272;4273;4274	4273					-0.03630172462931114
AYPHRLNLF	9	Unmodified	_AYPHRLNLF_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2;nc|ENSG00000163125|Q5VT52-4|RPRD2;nc|ENSG00000163125|Q5VT52-5|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	565.8106689453125	2	565.808908	1129.60326	2.5158	0.0014235	0.090632	5.128E-05	2.6064	0.0014747	565.8084581120038	82.543	0.85348	82.543	82.181	83.035	0					47	19	4	0	0	0	0.19716	1	8545	8545		76.847	34.45	1	3457300			3040	6269	2262	2271	4275	4275					0.04364557808344216
AYPLLLSPSI	10	Unmodified	_AYPLLLSPSI_					0	0	0			REV__ENST00000556808.1_1_X:53116914-53117118:+|nuORF	REV__ENST00000556808.1_1_X:53116914-53117118:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	537.3150024414062	2	537.3157	1072.61685	1.3027	0.00069996	-3.7505	-0.0020152	-2.4478	-0.0013152	537.3132572657894	101.41	1.2657	101.41	100.73	102	0					49	29	3	0	0	0	0.64063	1	11274	11274		37.159	0	1	1554100	+		3041	27567	2263	2272	4276	4276					0.08344370796953626
AYPLLLSPSI	10	Unmodified	_AYPLLLSPSI_					0	0	0			REV__ENST00000556808.1_1_X:53116914-53117118:+|nuORF	REV__ENST00000556808.1_1_X:53116914-53117118:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	537.3157	1072.61685	1.3027	0.00069996	-3.7505	-0.0020152	-2.4478	-0.0013152	537.3132572657894	101.41	1.2657	101.41	100.73	102	0	0.12964	-0.00071767	NaN	37.159	49	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1554100	+		3042	27567	2263	2272							0.08344370796953626
AYPLLLSPSI	10	Unmodified	_AYPLLLSPSI_					0	0	0			REV__ENST00000556808.1_1_X:53116914-53117118:+|nuORF	REV__ENST00000556808.1_1_X:53116914-53117118:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	537.3157	1072.61685	0.76246	0.00040968	0.36858	0.00019805	1.131	0.00060773	537.8178926135388	102.68	0.26002	101.16	101.05	101.31	-1.5211	-0.12964	0.0037088	NaN	37.159	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18234	+		3043	27567	2263	2272							0.08344370796953626
AYPPAPFMHIL	11	Unmodified	_AYPPAPFMHIL_					0	0	0		nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;WDR59-UBAP2L|1|fusion;CTSB-UBAP2L|1|fusion;ENST00000484819.1_1_1:154238957-154241481:+|nuORF	nc|ENSG00000143569|Q14157-3|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	MULTI-MSMS	OvCa99_classI_Rep5	1	628.8298950195312	2	628.828452	1255.64235	1.7427	0.0010959	0.068738	4.3224E-05	1.8115	0.0011391	628.828313412811	130.22	1.5226	130.22	129.77	131.29	0					72	31	4	0	0	0	0.54124	2	15105	15105;15129		50.025	13.578	1	2839100			3044	5073	2264	2273	4277;4278	4277					0.024755220477572948
AYPTVKFYF	9	Unmodified	_AYPTVKFYF_					0	0	0		ENST00000418559.5_1_2:183617332-183641856:+|nuORF;ENST00000491074.5_1_2:183616895-183641856:+|nuORF;nc|ENSG00000077232|Q8IXB1-2|DNAJC10;ENSG00000077232|ENST00000264065|DNAJC10	ENST00000418559.5_1_2:183617332-183641856:+|nuORF	ENST00000418559.5_1_2:183617332-183641856:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	568.2969360351562	2	568.294768	1134.57498	1.7776	0.0010102	0.96614	0.00054905	2.7437	0.0015592	568.2953313517885	118.71	0.75622	118.71	118.44	119.19	0					46	15	5	0	0	0	0.1804	1	13620	13620		79.713	24.208	1	1255400			3045	1566	2265	2274	4279	4279					0.013078151084073397
AYQDRLAYL	9	Unmodified	_AYQDRLAYL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;ENST00000558003.1_1_15:91016937-91017036:+|nuORF	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	556.7923583984375	2	556.790381	1111.56621	3.0986	0.0017253	-0.75349	-0.00041953	2.3451	0.0013058	556.789843533456	90.138	0.49068	90.138	89.891	90.382	0					20	11	2	0	0	0	0.49652	1	9655	9655		42.864	3.6114	1	1997600			3046	4862	2266	2275	4280	4280					0.014888414719507637
AYQHLFYLL	9	Unmodified	_AYQHLFYLL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000140575|ENST00000268182|IQGAP1;ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	584.3140258789062	2	584.313492	1166.61243	1.0897	0.00063674	0.66244	0.00038707	1.7522	0.0010238	584.3138773072657	130.89	1.7939	130.89	130.44	132.23	0					105	37	5	0	0	0	0.34496	1	15169	15169		57.811	1.3775	1	8487200			3047	4862;8118	2267	2276	4281	4281					0.03578906374059443
AYRRIFQKF	9	Unmodified	_AYRRIFQKF_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-MSMS	OvCa99_classI_Rep5	1	614.8513793945312	2	614.851107	1227.68766	-0.41563	-0.00025555	0.2668	0.00016404	-0.14884	-9.1512E-05	614.8511361832609	58.97	0.64293	58.97	58.734	59.377	0					38	16	3	0	0	0	0.37135	1	5047	5047		38.806	5.9937	1	2167500			3048	5894	2268	2277	4282	4282					0.08292508625117989
AYRRIGEF	8	Unmodified	_AYRRIGEF_					0	0	0			REV__ENSG00000158477|ENST00000289429|CD1A	REV__ENSG00000158477|ENST00000289429|CD1A	MULTI-MSMS	OvCa9_classI_Rep3	3	506.27410888671875	2	506.272158	1010.52976	1.7132	0.00086734	1.5295	0.00077434	3.2427	0.0016417	506.2727467608177	54.771	2.6321	51.6	50.779	53.411	-3.1715					173	88	3	0	0	0	0.73938	2	1478	1398;1478		31.955	0	1	154000	+		3049	20566	2269	2278	4283;4284	4284					0.02492009365892045
AYRRWRWRKRW	11	Unmodified	_AYRRWRWRKRW_					0	0	0			REV__ENST00000507209.5_1_4:187125362-187125452:+|nuORF	REV__ENST00000507209.5_1_4:187125362-187125452:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	429.76287841796875	4	430.744642	1718.94946	-0.9635	-0.00041502	-4.0247	-0.0017336	-4.9882	-0.0021486	430.7429915728743	70.112	0.44666	70.112	69.922	70.369	0					15	10	2	0	0	0	0.026549	1	6726	6726		3.6191	3.2477	1	191940	+		3050	26896	2270	2279	4285	4285					0.11874727764552517
AYRTRHEI	8	Unmodified	_AYRTRHEI_					0	0	0		ZBTB38|p.E501A|1|0.15|ENSG00000177311|chr3:141443890-141443890|A/C|missense_variant	ZBTB38|p.E501A|1|0.15|ENSG00000177311|chr3:141443890-141443890|A/C|missense_variant	ZBTB38|p.E501A|1|0.15|ENSG00000177311|chr3:141443890-141443890|A/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.34326171875	2	523.280515	1044.54648	1.2237	0.00064033	1.6095	0.00084222	2.8332	0.0014826	523.2814743140339	93.694	0.41519	93.694	93.468	93.883	0					14	9	2	0	0	0	0.028476	1	10152	10152		28.254	0	1	512920			3051	36312	2271	2280	4286	4286					0.025985102518461645
AYSAKIALF	9	Unmodified	_AYSAKIALF_					0	0	0		ENSG00000188641|ENST00000370192|DPYD;ENST00000474241.1_1_1:98157206-98165091:-|nuORF	ENSG00000188641|ENST00000370192|DPYD	ENSG00000188641|ENST00000370192|DPYD	MULTI-MSMS	OvCa99_classI_Rep5	1	492.28314208984375	2	492.28166	982.548768	-0.6237	-0.00030704	-1.1145	-0.00054864	-1.7382	-0.00085567	492.2808819128145	103.53	1.218	103.53	102.98	104.19	0					56	28	3	0	0	0	0.012163	2	11562	11562;11591		161.9	71.122	1	9929600			3052	8486	2272	2281	4287;4288	4287					0.05679545936948216
AYSDGHFLF	9	Unmodified	_AYSDGHFLF_					0	0	0		ENSG00000149256|ENST00000278550|TENM4;TENM4|p.S1214Rfs*51|1|0.08|ENSG00000149256|chr11:78722826-78722826|G/-|frameshift_variant	ENSG00000149256|ENST00000278550|TENM4	ENSG00000149256|ENST00000278550|TENM4	MULTI-MSMS	OvCa99_classI_Rep5	1	528.7444458007812	2	528.742899	1055.47125	2.2804	0.0012058	-0.17434	-9.2179E-05	2.1061	0.0011136	528.7427679265106	106.43	1.944	106.43	105.7	107.65	0					91	44	5	0	0	0	0.032351	3	12004	11956;11980;12004		133.47	42.71	1	16757000			3053	5447	2273	2282	4289;4290;4291	4291					-0.054270919992632116
AYSESLEKDL	10	Unmodified	_AYSESLEKDL_					0	0	0			REV__nc|ENSG00000163946|Q9UK61-3|TASOR	REV__nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.329833984375	2	577.782418	1153.55028	1.291	0.00074591	-4.3003	-0.0024846	-3.0093	-0.0017387	577.7799000428009	130.08	1.3346	130.08	129.77	131.1	0					64	27	4	0	0	0	0.026681	1	15171	15171		52.937	0	1	1351400	+		3054	20918	2274	2283	4292	4292					-0.020349095556184693
AYSNSSVNPII	11	Unmodified	_AYSNSSVNPII_					0	0	0		ENSG00000166573|ENST00000299727|GALR1	ENSG00000166573|ENST00000299727|GALR1	ENSG00000166573|ENST00000299727|GALR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.817626953125	2	582.798403	1163.58225	1.4156	0.00082502	-1.1907	-0.00069397	0.22486	0.00013105	583.3007684910652	78.771	0.24225	78.771	78.668	78.911	0					6	5	2	0	0	0	0.025767	1	8015	8015		45.022	15.181	1	61647			3055	6693	2275	2284	4293	4293					0.007005029181982536
AYSRVQYQF	9	Unmodified	_AYSRVQYQF_					0	0	0		ENSG00000137936|ENST00000260502|BCAR3;nc|ENSG00000137936|O75815-3|BCAR3	ENSG00000137936|ENST00000260502|BCAR3	ENSG00000137936|ENST00000260502|BCAR3	MULTI-MSMS	OvCa99_classI_Rep5	1	581.288818359375	2	581.288005	1160.56146	1.679	0.00097595	0.41784	0.00024288	2.0968	0.0012188	581.2881661519533	76.686	1.2223	76.686	76.365	77.588	0					65	29	4	0	0	0	0.022645	2	7686	7686;7715		143.89	47.696	1	7255000			3056	4635	2276	2285	4294;4295	4294					-0.012400426708154555
AYSSYVHQY	9	Unmodified	_AYSSYVHQY_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58538022-58538124:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	OvCa9_classI_Rep2	2	559.2499389648438	2	559.251089	1116.48762	0.91482	0.00051161	-1.2214	-0.00068305	-0.30654	-0.00017143	559.2502805289566	66.486	1.191	63.791	63.368	64.559	-2.6958					72	23	4	0	0	0	0.16562	2	5159	5155;5159		82.241	30.905	1	426830			3057	1280	2277	2286	4296;4297	4297					-0.06596010833141008
AYSSYVHQY	9	Unmodified	_AYSSYVHQY_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2;ENST00000592995.1_1_17:58538022-58538124:-|nuORF	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.251953125	2	559.251089	1116.48762	1.7056	0.00095386	-2.0603	-0.0011522	-0.35469	-0.00019836	559.2499063312847	67.203	1.8681	63.713	63.344	65.212	-3.4902					113	37	5	0	0	0	0.026923	3	4916	4916;4927;4940		138.83	52.314	1	2247800			3058	1280	2277	2286	4298;4299;4300	4298					-0.06596010833141008
AYSVEHNQL	9	Unmodified	_AYSVEHNQL_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	OvCa99_classI_Rep5	1	530.7578735351562	2	530.756538	1059.49852	0.11589	6.1511E-05	-0.24231	-0.00012861	-0.12642	-6.7099E-05	530.7563152220039	58.255	0.79304	58.255	57.941	58.734	0					54	18	4	0	0	0	0.053172	1	4936	4936		116.9	34.663	1	4364800			3059	3261	2278	2287	4301	4301					-0.028846084588622034
AYTKLTDNI	9	Unmodified	_AYTKLTDNI_					0	0	0		nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1;SOGA1-SAMHD1|2|fusion	nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1	nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3029174804688	2	519.776939	1037.53933	-2.4031	-0.0012491	2.4847	0.0012915	0.081627	4.2428E-05	519.7779872123741	49.738	0.88107	46.596	46.251	47.132	-3.1416					25	16	2	0	0	0	0.027462	1	2870	2870		32.751	4.669	1	39536			3060	2169	2279	2288	4302	4302					0.022057328607388627
AYTLLLHTW	9	Unmodified	_AYTLLLHTW_					0	0	0		ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENSG00000134516|ENST00000520908|DOCK2	ENSG00000134516|ENST00000520908|DOCK2	MULTI-MSMS	OvCa99_classI_Rep5	1	559.3077392578125	2	559.305667	1116.59678	2.8335	0.0015848	-0.55247	-0.000309	2.2811	0.0012758	559.3052574528612	120.92	0.82144	120.92	120.56	121.38	0					42	18	4	0	0	0	0.0073143	2	13909	13889;13909		183.89	106.58	1	1879700			3061	4305	2280	2289	4303;4304	4304					0.04314619856972968
AYTPFHAVL	9	Unmodified	_AYTPFHAVL_					0	0	0		nc|ENSG00000138614|Q96SY0-4|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;ENSG00000138614|ENST00000313182|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	MULTI-MSMS	OvCa99_classI_Rep5	1	509.7731628417969	2	509.77146	1017.52837	2.5976	0.0013242	-0.71745	-0.00036573	1.8802	0.00095847	509.7709711578997	100.66	1.2904	100.66	100.19	101.48	0					86	30	5	0	0	0	0.11842	1	11159	11159		92.191	20.895	1	13386000			3062	4696	2281	2290	4305	4305					0.0203037527712695
AYTPFHAVL	9	Unmodified	_AYTPFHAVL_					0	0	0		nc|ENSG00000138614|Q96SY0-4|INTS14;nc|ENSG00000138614|Q96SY0-3|INTS14;ENSG00000138614|ENST00000313182|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	nc|ENSG00000138614|Q96SY0-4|INTS14	MULTI-MATCH	OvCa9_classI_Rep3	3		2	509.77146	1017.52837	-0.65126	-0.000332	0.69692	0.00035527	0.045657	2.3275E-05	509.77020056398453	102.49	0.57115	100.97	100.63	101.21	-1.5211	0.1579	0.0013709	NaN	92.191	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15116			3063	4696	2281	2290							0.0203037527712695
AYVEKVEKL	9	Unmodified	_AYVEKVEKL_					0	0	0		nc|ENSG00000166025|Q8IY63-2|AMOTL1;ENSG00000166025|ENST00000433060|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	MULTI-MSMS	OvCa99_classI_Rep5	1	539.8123168945312	2	539.810782	1077.60701	-0.18268	-9.8612E-05	-0.047574	-2.5681E-05	-0.23025	-0.00012429	539.8106630206023	58.671	0.8756	58.671	58.28	59.156	0					58	21	5	0	0	0	0.10502	1	4985	4985		95.815	13.575	1	6397300			3064	6629	2282	2291	4306	4306					0.0713118279156788
AYVEKVERL	9	Unmodified	_AYVEKVERL_					0	0	0		nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF	nc|ENSG00000114019|Q9Y2J4-3|AMOTL2	nc|ENSG00000114019|Q9Y2J4-3|AMOTL2	MULTI-MSMS	OvCa99_classI_Rep5	1	553.8153076171875	2	553.813856	1105.61316	-0.51839	-0.00028709	-0.094302	-5.2226E-05	-0.61269	-0.00033932	553.8138026348041	59.785	1.1964	59.785	59.533	60.73	0					50	29	2	0	0	0	0.047422	1	5177	5177		120.31	27.11	1	23173000			3065	3006	2283	2292	4307	4307					0.06457701023077789
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(97)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	OvCa99_classI_Rep5	1	560.7672729492188	2	560.765852	1119.51715	0.8442	0.0004734	-1.2293	-0.00068934	-0.38508	-0.00021594	560.765115839608	58.005	0.6282	58.005	57.609	58.237	0					57	14	6	0	0	0	0.098892	2	4926	4894;4926		97.473	53.356	1	19956000			3066	4793	2284	2293	4308;4309	4309		154			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(97)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	OvCa99_classI_Rep5	1	560.7675170898438	2	560.765852	1119.51715	0.5333	0.00029905	-0.84705	-0.000475	-0.31376	-0.00017594	560.7653062407552	58.467	1.0708	58.467	58.194	59.265	0					62	26	4	0	0	0	0.098892	2	4984	4955;4984		97.473	45.174	1	19535000			3067	4793	2284	2293	4310;4311	4311		154			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(110)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	OvCa99_classI_Rep5	1	560.7665405273438	2	560.765852	1119.51715	0.28288	0.00015863	-0.35195	-0.00019736	-0.069066	-3.873E-05	560.7654501166066	59.956	7.9661	59.956	59.011	66.977	0					516	197	4	0	0	0	0.06571	23	5500	5114;5140;5189;5219;5252;5278;5308;5350;5375;5401;5429;5460;5500;5525;5600;5629;5659;5718;5749;5828;5857;6032;6043		109.7	50.922	1	4535800			3068	4793	2284	2293	4312;4313;4314;4315;4316;4317;4318;4319;4320;4321;4322;4323;4324;4325;4326;4327;4328;4329;4330;4331;4332;4333;4334	4324		154			-0.03782770088673715
AYVHMVTHF	9	Oxidation (M)	_AYVHM(Oxidation (M))VTHF_		AYVHM(1)VTHF		AYVHM(60)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.3446044921875	2	560.765852	1119.51715	1.0102	0.00056648	-0.69609	-0.00039034	0.3141	0.00017613	560.7656540906241	67.339	1.2304	67.339	66.452	67.683	0					58	30	4	0	0	0	0.027425	1	6204	6204		60.294	26.778	1	1392300			3069	4793	2284	2293	4335	4335		154			-0.03782770088673715
AYVHMVTHF	9	Unmodified	_AYVHMVTHF_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	OvCa99_classI_Rep5	1	552.769775390625	2	552.768394	1103.52224	2.4802	0.001371	-1.8071	-0.00099893	0.67309	0.00037207	552.7678472540366	75.542	4.9061	75.542	75.168	80.074	0					364	120	6	0	0	0	0.0078954	9	7594	7504;7534;7564;7594;7624;7655;7685;7714;7744		217.6	132.24	1	278410000			3070	4793	2284	2294	4336;4337;4338;4339;4340;4341;4342;4343;4344	4339					-0.025384662260421464
AYVHMVTHF	9	Unmodified	_AYVHMVTHF_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	552.768394	1103.52224	-0.84173	-0.00046528	2.691	0.0014875	1.8493	0.0010222	552.7696407058243	78.261	1.141	75.908	75.698	76.839	-2.3527	0.18301	0.0029373	NaN	217.6	42	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164960			3071	4793	2284	2294							-0.025384662260421464
AYVLPQPVE	9	Unmodified	_AYVLPQPVE_					0	0	0		ENSG00000167971|ENST00000343516|CASKIN1	ENSG00000167971|ENST00000343516|CASKIN1	ENSG00000167971|ENST00000343516|CASKIN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.79388427734375	2	508.276575	1014.5386	-0.12867	-6.5402E-05	-1.9442	-0.00098819	-2.0729	-0.0010536	508.2749196059992	128.42	0.87405	126.96	126.42	127.3	-1.4565					24	16	3	0	0	0	0.027462	1	12283	12283		45.952	10.334	1	14893			3072	6853	2285	2295	4345	4345					0.03190938211707817
AYVPGFAHI	9	Unmodified	_AYVPGFAHI_					0	0	0		ENST00000477994.1_1_10:104183924-104192326:-|nuORF;ENSG00000107874|ENST00000369937|CUEDC2	ENST00000477994.1_1_10:104183924-104192326:-|nuORF	ENST00000477994.1_1_10:104183924-104192326:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	487.7600402832031	2	487.758352	973.502152	1.9639	0.00095791	0.30742	0.00014994	2.2713	0.0011079	487.7583655041607	99.876	0.8756	99.876	99.612	100.49	0					50	20	4	0	0	0	0.22187	1	11068	11068		72.62	30.145	1	6963400			3073	2624	2286	2296	4346	4346					0.01434106105648425
AYVVKVFSL	9	Unmodified	_AYVVKVFSL_					0	0	0		ENSG00000125730|ENST00000245907|C3;ENST00000598805.2_1_19:6686670-6693093:-|nuORF	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	OvCa99_classI_Rep5	1	513.3058471679688	2	513.305136	1024.59572	2.7859	0.00143	-0.47261	-0.00024259	2.3133	0.0011874	513.3046768093593	115.94	0.69157	115.94	115.68	116.37	0					40	14	4	0	0	0	0.094616	1	13250	13250		98.629	43.125	1	1026100			3074	3725	2287	2297	4347	4347					0.08440405488090619
CAALRTLHPE	10	Unmodified	_CAALRTLHPE_					0	0	0		ENST00000560243.5_1_14:24734823-24736046:-|nuORF	ENST00000560243.5_1_14:24734823-24736046:-|nuORF	ENST00000560243.5_1_14:24734823-24736046:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.8287353515625	2	555.789858	1109.56516	-0.32235	-0.00017916	-2.385	-0.0013255	-2.7073	-0.0015047	555.7887049514617	65.775	0.24387	62.29	62.13	62.374	-3.4854					7	4	2	0	0	0	0.026915	1	4759	4759		20.947	10.682	1	13418			3075	13731	2288	2298	4348	4348					0.014763038314185906
CAAVEMICHS	10	Unmodified	_CAAVEMICHS_					0	0	0			REV__ENST00000397195.9_1_17:2588401-2588581:+|nuORF	REV__ENST00000397195.9_1_17:2588401-2588581:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.8463745117188	2	532.222105	1062.42966	2.5948	0.001381	1.9973	0.001063	4.5921	0.002444	532.2228646213031	94.43	0.29797	94.43	94.306	94.604	0					9	6	2	0	0	0	0.026849	1	10276	10276		25.574	0	1	87649	+		3076	25347	2289	2299	4349	4349					-0.09906055346073117
CAHAVAGPWL	10	Unmodified	_CAHAVAGPWL_					0	0	0			REV__ENST00000421852.5_1_3:185209027-185209108:-|nuORF	REV__ENST00000421852.5_1_3:185209027-185209108:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	512.7568969726562	2	512.755287	1023.49602	2.1243	0.0010892	2.9823	0.0015292	5.1066	0.0026184	513.2582650022039	60.067	1.3137	56.968	56.327	57.641	-3.0993					54	39	2	0	0	0	0.65806	1	2010	2010		35.201	6.9464	1	16053	+		3077	25201	2290	2300	4350	4350					-0.014787353975066253
CAHGRVQVVT	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))AHGRVQVVT_	C(1)AHGRVQVVT		C(46)AHGRVQVVT		0	1	0		ENST00000496561.2_1_9:33528677-33533586:+|nuORF;ENST00000435620.6_1_3:197803775-197807401:-|nuORF;ENSG00000180071|ENST00000399703|ANKRD18A;nc|ENSG00000230453|A2A2Z9|ANKRD18B;ENSG00000230453|ENST00000684830|ANKRD18B	ENST00000496561.2_1_9:33528677-33533586:+|nuORF	ENST00000496561.2_1_9:33528677-33533586:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.79443359375	2	563.792932	1125.57131	1.1252	0.0006344	-2.1684	-0.0012225	-1.0432	-0.00058814	563.7915876917513	89.184	1.1349	86.581	86.237	87.371	-2.6027					78	22	5	0	0	0	0.5675	1	7688	7688		45.972	8.1607	1	2005100			3078	7854	2291	2301	4351	4351	75				0.013548220629218122
CAIAHKPA	8	Unmodified	_CAIAHKPA_					0	0	0			REV__ENST00000594671.5_1_19:4676136-4676472:-|nuORF	REV__ENST00000594671.5_1_19:4676136-4676472:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	405.7189636230469	2	405.718173	809.421793	1.9299	0.00078299	-0.41137	-0.0001669	1.5185	0.00061609	405.71788630934805	120.02	2.0709	118.99	118.68	120.75	-1.0271					79	40	4	0	0	0	0.74361	1	9160	9160		29.842	0	1	570100	+		3079	27983	2292	2302	4352	4352					0.009459215109586694
CAIRQCQDS	9	Unmodified	_CAIRQCQDS_					0	0	0		RB1-FNDC3A|1|fusion;nc|ENSG00000102531|Q9Y2H6-2|FNDC3A;ENSG00000102531|ENST00000492622|FNDC3A	RB1-FNDC3A|1|fusion	RB1-FNDC3A|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.3035888671875	2	512.220951	1022.42735	-0.44854	-0.00022975	-3.1975	-0.0016378	-3.646	-0.0018676	512.2191509753264	35.994	0.45844	35.994	35.799	36.257	0					16	9	3	0	0	0	0.027462	1	1853	1853		35.618	6.4687	1	136610			3080	15542	2293	2303	4353	4353					-0.08296767759532031
CAPLNIRRH	9	Unmodified	_CAPLNIRRH_					0	0	0		ENST00000494880.5_1_1:185268818-185270317:-|nuORF;ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENSG00000116679|ENST00000367498|IVNS1ABP	ENST00000494880.5_1_1:185268818-185270317:-|nuORF	ENST00000494880.5_1_1:185268818-185270317:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	540.2979736328125	2	540.298185	1078.58182	-1.8908	-0.0010216	1.5096	0.00081564	-0.38116	-0.00020594	540.2989536670705	38.535	2.9688	35.825	35.469	38.438	-2.7097					158	59	5	0	0	0	0.59983	1	1902	1902		31.955	3.8734	1	1380400			3081	3195	2294	2304	4354	4354					0.04566849508000814
CARARGRPV	9	Unmodified	_CARARGRPV_					0	0	0			REV__ENST00000361786.6_1_14:77564627-77564663:+|nuORF	REV__ENST00000361786.6_1_14:77564627-77564663:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	493.27764892578125	2	493.277252	984.539951	1.3654	0.00067352	1.0787	0.00053208	2.4441	0.0012056	493.27765041549196	62.273	1.0365	59.239	58.872	59.909	-3.0339					37	22	2	0	0	0	0.61208	1	2257	2257		30.504	1.3541	1	32989	+		3082	24864	2295	2305	4355	4355					0.04706293819481289
CASLELGGIEL	11	Unmodified	_CASLELGGIEL_					0	0	0			REV__NOS1|p.F584L|1|0.06|ENSG00000089250|chr12:117272472-117272472|G/C|missense_variant	REV__NOS1|p.F584L|1|0.06|ENSG00000089250|chr12:117272472-117272472|G/C|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	552.7918701171875	2	552.783907	1103.55326	1.6148	0.00089263	-2.3136	-0.0012789	-0.69884	-0.00038631	552.7825123333747	113.78	0.61681	113.78	113.53	114.15	0					30	13	3	0	0	0	0.20195	1	12982	12982		79.713	13.283	1	605470	+		3083	29258	2296	2306	4356	4356					0.005626422975637979
CATIRKWLTK	10	Unmodified	_CATIRKWLTK_					0	0	0		ENST00000452385.5_1_3:48982572-49020700:+|nuORF;ENSG00000177479|ENST00000356401|ARIH2;ENST00000469038.1_1_3:49011147-49012531:+|nuORF;ENST00000465217.1_1_3:49008110-49012121:+|nuORF	ENST00000452385.5_1_3:48982572-49020700:+|nuORF	ENST00000452385.5_1_3:48982572-49020700:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	611.3200073242188	2	610.352625	1218.6907	2.4657	0.0015049	3.8901	0.0023744	6.3558	0.0038793	610.354522608489	97.067	0.8128	97.067	96.625	97.438	0					32	18	3	0	0	0	0.026638	1	10684	10684		44.377	0	1	582330			3084	7687	2297	2307	4357	4357					0.09010015687590567
CAVILTPL	8	Unmodified	_CAVILTPL_					0	0	0			REV__ENST00000459901.5_1_2:241463300-241492642:-|nuORF	REV__ENST00000459901.5_1_2:241463300-241492642:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	415.2493896484375	2	415.246232	828.477911	0.33854	0.00014058	4.3953	0.0018251	4.7339	0.0019657	415.2479452689324	54.152	0.8272	54.152	53.891	54.718	0					65	19	5	0	0	0	0.59103	1	4342	4342		65.897	0.094285	1	10566000	+		3085	26071	2298	2308	4358	4358					0.05681129627782866
CAVLWVLV	8	Carbamidomethyl (C)	_C(Carbamidomethyl (C))AVLWVLV_	C(1)AVLWVLV		C(67)AVLWVLV		0	1	0		ENSG00000178623|ENST00000407714|GPR35;nc|ENSG00000178623|Q9HC97-2|GPR35	ENSG00000178623|ENST00000407714|GPR35	ENSG00000178623|ENST00000407714|GPR35	MULTI-MSMS	OvCa9_classI_Rep3	3	480.2721252441406	2	480.272781	958.531009	0.45217	0.00021716	1.4543	0.00069844	1.9064	0.00091561	480.27339827720505	79.417	2.0792	77.077	76.705	78.785	-2.3399					143	40	6	0	0	0	0.58426	1	4272	4272		67.327	21.355	1	3497600			3086	7767	2299	2309	4359	4359	73				0.05008507410445873
CCCCDQSAK	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))CCCDQSAK_	C(0.25)C(0.25)C(0.25)C(0.25)DQSAK		C(0)C(0)C(0)C(0)DQSAK		0	1	0			REV__ENST00000373053.7_2_10:74647032-74647206:+|nuORF	REV__ENST00000373053.7_2_10:74647032-74647206:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.1690979003906	2	509.166473	1016.31839	-0.58251	-0.0002966	3.8413	0.0019559	3.2588	0.0016593	509.16851310267214	89.073	1.5381	86.47	86.034	87.573	-2.6027					82	30	4	0	0	0	0.51865	1	7617	7617		40.778	11.629	4	415270	+		3087	25023	2300	2310	4360	4360	300;301;302;303				-0.18911438045665818
CCGHCSVE	8	Unmodified	_CCGHCSVE_					0	0	0			REV__ENST00000397118.7_1_14:24047403-24047508:-|nuORF	REV__ENST00000397118.7_1_14:24047403-24047508:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	419.19903564453125	2	419.138041	836.261529	-2.2831	-0.00095693	1.7777	0.00074511	-0.50536	-0.00021182	419.1388319184132	49.974	0.31142	46.832	46.663	46.974	-3.1416					7	5	2	0	0	0	0.028476	1	2863	2863		62.978	27.36	1	7925.8	+		3088	25344	2301	2311	4361	4361					-0.16315117539886614
CCLGDVRRLL	10	Unmodified	_CCLGDVRRLL_					0	0	0			REV__CARD14|p.F649L|1|0.05|ENSG00000141527|chr17:80201837-80201837|T/C|missense_variant	REV__CARD14|p.F649L|1|0.05|ENSG00000141527|chr17:80201837-80201837|T/C|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	574.3070068359375	2	574.307361	1146.60017	-0.44218	-0.00025395	0.41493	0.0002383	-0.027248	-1.5648E-05	574.3071119587892	23.272	0.25258	23.272	23.144	23.397	0					8	4	3	0	0	0	0.73378	1	314	314		26.693	4.733	1	60405	+		3089	15737	2302	2312	4362	4362					0.032732233677052136
CCMIKKKTL	9	Unmodified	_CCMIKKKTL_					0	0	0		ENSG00000108950|ENST00000592554|FAM20A;ENST00000226094.9_1_17:66533620-66538255:-|nuORF	ENSG00000108950|ENST00000592554|FAM20A	ENSG00000108950|ENST00000592554|FAM20A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.8095092773438	2	534.292333	1066.57011	-1.9874	-0.0010618	-1.1691	-0.00062465	-3.1565	-0.0016865	534.2919403171476	95.874	1.3151	93.448	92.854	94.169	-2.4256					32	25	2	0	0	0	0.027426	1	8484	8484		47.657	0	1	41771			3090	2688	2303	2313	4363	4363					0.03949148378137579
CCRYILLL	8	Unmodified	_CCRYILLL_					0	0	0			REV__sp|C1BEG3|UL74A_HCMVMUncharacterizedproteinUL74AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL74APE=4SV=2	REV__sp|C1BEG3|UL74A_HCMVMUncharacterizedproteinUL74AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL74APE=4SV=2	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.33380126953125	2	498.772091	995.529629	-0.57303	-0.00028581	-1.5289	-0.00076258	-2.1019	-0.0010484	498.77120513452377	136.26	1.1223	136.03	135.72	136.84	-0.22696					46	22	3	0	0	0	0.028476	1	13500	13500		28.254	0	1	27028	+		3091	29380	2304	2314	4364	4364					0.031685500500316266
CDDDNRILD	9	Unmodified	_CDDDNRILD_					0	0	0		ENST00000366479.3_1_1:248201943-248202102:+|nuORF	ENST00000366479.3_1_1:248201943-248202102:+|nuORF	ENST00000366479.3_1_1:248201943-248202102:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.8618774414062	2	539.72712	1077.43969	1.8132	0.00097863	2.545	0.0013736	4.3582	0.0023522	539.7283489864258	136.16	0.73543	134.62	134.25	134.99	-1.5437					22	14	2	0	0	0	0.027462	1	13221	13221		39.253	15.73	1	21385			3092	10817	2305	2315	4365	4365					-0.09593452815511228
CDDINESYDD	10	Unmodified	_CDDINESYDD_					0	0	0			REV__NOTCH2|p.C335Y|1|0.06|ENSG00000134250|chr1:119969615-119969615|C/T|missense_variant	REV__NOTCH2|p.C335Y|1|0.06|ENSG00000134250|chr1:119969615-119969615|C/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.7073974609375	2	594.703508	1187.39246	2.6276	0.0015626	-2.9983	-0.0017831	-0.37071	-0.00022046	594.7015405541247	121.25	0.69578	121.25	121.01	121.71	0					27	15	2	0	0	0	0.026849	1	13951	13951		32.812	0	1	317620	+		3093	29259	2306	2316	4366	4366					-0.19373776877159798
CDDKLNKKS	9	Unmodified	_CDDKLNKKS_					0	0	0		nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A	nc|ENSG00000174485|Q7Z401|DENND4A	nc|ENSG00000174485|Q7Z401|DENND4A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.2756958007812	2	525.766049	1049.51754	-1.9063	-0.0010023	2.0657	0.0010861	0.15934	8.3777E-05	525.7669289119392	50.545	1.6359	47.38	46.745	48.38	-3.1645					83	31	4	0	0	0	0.027462	1	2876	2876		40.778	7.2626	1	471570			3094	7469	2307	2317	4367	4367					-0.005233951594618702
CDFLLSFR	8	Unmodified	_CDFLLSFR_					0	0	0			REV__ENST00000295317.3_1_2:101925069-101925135:-|nuORF	REV__ENST00000295317.3_1_2:101925069-101925135:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.8253479003906	2	500.74967	999.484787	-0.90649	-0.00045392	-0.65925	-0.00033012	-1.5657	-0.00078404	501.2520731730442	63.096	0.43562	59.621	59.48	59.916	-3.475					13	8	2	0	0	0	0.028476	1	4407	4407		25.45	6.0902	1	23541	+		3095	24188	2308	2318	4368	4368					-0.014975574916547885
CDKPLDQRTI	10	Unmodified	_CDKPLDQRTI_					0	0	0			REV__nc|ENSG00000023228|P28331-5|NDUFS1	REV__nc|ENSG00000023228|P28331-5|NDUFS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.3378295898438	2	594.805705	1187.59686	2.0323	0.0012088	1.0897	0.00064814	3.122	0.001857	594.8060370899133	105.99	0.8784	105.99	105.7	106.58	0					38	19	4	0	0	0	0.027028	1	11987	11987		18.262	0	1	1262000	+		3096	28709	2309	2319	4369	4369					0.010562517946709704
CDMLSLSPLL	10	Unmodified	_CDMLSLSPLL_					0	0	0			REV__ENSG00000125676|ENST00000245838|THOC2	REV__ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.2752075195312	2	546.277403	1090.54025	-1.7314	-0.0009458	-1.5552	-0.00084956	-3.2865	-0.0017954	546.2765092095829	119.76	1.3636	118.42	118.03	119.4	-1.3444					60	25	3	0	0	0	0.50656	1	11238	11238		53.351	2.016	1	223170	+		3097	18738	2310	2320	4370	4370					-0.0013951208618436794
CDNTDGAAV	9	Unmodified	_CDNTDGAAV_					0	0	0			REV__ENST00000361368.6_1_7:98626927-98627110:-|nuORF	REV__ENST00000361368.6_1_7:98626927-98627110:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1717224121094	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.62352	1	2075	2075		29.15	2.4566	1	60065	+		3098	24851	2311	2321	4371	4371					-0.10924467452787212
CDRFTKCII	9	Unmodified	_CDRFTKCII_					0	0	0			REV__tr|A0A7D7A152|A0A7D7A152_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06195PE=3SV=1	REV__tr|A0A7D7A152|A0A7D7A152_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06195PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	549.7772827148438	2	549.775362	1097.53617	0.97564	0.00053638	4.2179	0.0023189	5.1936	0.0028553	549.7775509446394	81.551	1.2733	81.551	81.206	82.479	0					88	30	4	0	0	0	0.28934	1	8456	8456		64.207	7.4862	1	10863000	+		3099	32472	2312	2322	4372	4372					-0.008695567892573308
CDTSMYFPI	9	Unmodified	_CDTSMYFPI_					0	0	0			REV__nc|ENSG00000072518|Q7KZI7-16|MARK2	REV__nc|ENSG00000072518|Q7KZI7-16|MARK2	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.7201538085938	2	538.725003	1075.43545	-2.1387	-0.0011522	-3.8598	-0.0020794	-5.9985	-0.0032315	538.7227765525084	118.87	1.1966	117.53	117.26	118.46	-1.3444					52	22	4	0	0	0	0.44294	1	11166	11166		47.916	1.9636	1	100940	+		3100	16917	2313	2323	4373	4373					-0.09924633562764029
CDTSMYFPI	9	Unmodified	_CDTSMYFPI_					0	0	0			REV__nc|ENSG00000072518|Q7KZI7-16|MARK2	REV__nc|ENSG00000072518|Q7KZI7-16|MARK2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	538.725003	1075.43545	-2.0493	-0.001104	-4.1201	-0.0022196	-6.1695	-0.0033236	538.7226729413738	118.04	1.2433	117.89	117.44	118.68	-0.14755	0.24646	0.00071378	NaN	47.916	45	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52179	+		3101	16917	2313	2323							-0.09924633562764029
CDTSMYFPI	9	Unmodified	_CDTSMYFPI_					0	0	0			REV__nc|ENSG00000072518|Q7KZI7-16|MARK2	REV__nc|ENSG00000072518|Q7KZI7-16|MARK2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	538.725003	1075.43545	0.91701	0.00049402	-7.1881	-0.0038724	-6.2711	-0.0033784	538.7209974070805	118.54	1.142	117.51	117.29	118.43	-1.0271	-0.13177	-0.0025918	NaN	47.916	46	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75570	+		3102	16917	2313	2323							-0.09924633562764029
CDTSMYFPI	9	Unmodified	_CDTSMYFPI_					0	0	0			REV__nc|ENSG00000072518|Q7KZI7-16|MARK2	REV__nc|ENSG00000072518|Q7KZI7-16|MARK2	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	538.725003	1075.43545	-2.1387	-0.0011522	-3.8598	-0.0020794	-5.9985	-0.0032315	538.7227765525084	118.87	1.1966	117.53	117.26	118.46	-1.3444	-0.11469	0.00099425	NaN	47.916	52	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100940	+		3103	16917	2313	2323							-0.09924633562764029
CDVAKEHDVQN	11	Unmodified	_CDVAKEHDVQN_					0	0	0		nc|ENSG00000145439|Q8N4T8-2|CBR4;ENSG00000145439|ENST00000306193|CBR4	nc|ENSG00000145439|Q8N4T8-2|CBR4	nc|ENSG00000145439|Q8N4T8-2|CBR4	MULTI-MSMS	OvCa9_classI_Rep3	3	629.2782592773438	2	629.280051	1256.54555	0.35686	0.00022457	-3.7783	-0.0023776	-3.4214	-0.002153	629.2776166933829	118.32	2.3254	117.29	116.93	119.26	-1.0324					108	46	4	0	0	0	0.48315	1	8932	8932		55.084	9.1117	1	584120			3104	5225	2314	2324	4374	4374					-0.07246116970031835
CDVEIDCTS	9	Unmodified	_CDVEIDCTS_					0	0	0			REV__sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1	REV__sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.722412109375	2	492.686075	983.357598	-0.83023	-0.00040904	0.34553	0.00017024	-0.48471	-0.00023881	492.6860205165015	50.572	0.13096	50.572	50.509	50.64	0					4	2	2	0	0	0	0.027462	1	3844	3844		10.866	0	1	51947	+		3105	29417	2315	2325	4375	4375					-0.13474691218800672
CDVGPLLLR	9	Unmodified	_CDVGPLLLR_					0	0	0			REV__nc|ENSG00000151136|A6QL63-5|ABTB3	REV__nc|ENSG00000151136|A6QL63-5|ABTB3	MULTI-MSMS	OvCa9_classI_Rep3	3	493.27691650390625	2	493.278595	984.542637	1.3654	0.00067352	-1.6433	-0.00081059	-0.27789	-0.00013708	493.27765041549196	62.273	1.0365	59.239	58.872	59.909	-3.0339					37	22	2	0	0	0	0.62352	1	2244	2244		29.15	2.3535	1	32989	+		3106	20217	2316	2326	4376	4376					0.04974704433766419
CDVLRVKL	8	Unmodified	_CDVLRVKL_					0	0	0			REV__tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1	REV__tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.28338623046875	2	473.281137	944.547722	2.9124	0.0013784	3.7592	0.0017792	6.6716	0.0031576	473.2826945129247	136.88	1.1673	135.34	135.03	136.2	-1.5437					38	23	3	0	0	0	0.65062	1	13278	13278		53.351	2.016	1	65667	+		3107	31524	2317	2327	4377	4377					0.07323008296384614
CECRVGQKK	9	Unmodified	_CECRVGQKK_					0	0	0		HS6ST2|p.T343Cfs*20|1|0.27|ENSG00000171004|chrX:132628995-132629014|TGCAGGGATGCTTTCCATGT/-|frameshift_variant;nc|ENSG00000171004|Q96MM7-2|HS6ST2;nc|ENSG00000171004|Q96MM7-3|HS6ST2;nc|ENSG00000171004|Q96MM7|HS6ST2;ENSG00000171004|ENST00000370833|HS6ST2	HS6ST2|p.T343Cfs*20|1|0.27|ENSG00000171004|chrX:132628995-132629014|TGCAGGGATGCTTTCCATGT/-|frameshift_variant	HS6ST2|p.T343Cfs*20|1|0.27|ENSG00000171004|chrX:132628995-132629014|TGCAGGGATGCTTTCCATGT/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	525.7623291015625	2	525.762786	1049.51102	-1.0057	-0.00052877	2.6905	0.0014146	1.6848	0.0008858	525.7640860878864	63.827	1.9331	61.082	60.638	62.571	-2.7444					79	36	4	0	0	0	0.56889	1	4845	4845		35.618	5.1146	1	975490			3108	7161	2318	2328	4378	4378					-0.011756115918387877
CEDDHHLPTV	10	Unmodified	_CEDDHHLPTV_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	OvCa9_classI_Rep3	3	583.2489624023438	2	583.250763	1164.48697	-1.0186	-0.00059412	-2.1475	-0.0012525	-3.1661	-0.0018467	583.2492999893292	131	1.923	129.88	129.51	131.44	-1.1249					92	38	4	0	0	0	0.3976	2	10414	10414;10432		68.787	6.311	1	472570			3109	4134	2319	2329	4379;4380	4379					-0.08869173544508158
CEEARQSPI	9	Unmodified	_CEEARQSPI_					0	0	0		ENST00000470271.5_1_1:41445802-41446012:+|nuORF	ENST00000470271.5_1_1:41445802-41446012:+|nuORF	ENST00000470271.5_1_1:41445802-41446012:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.7708129882812	2	516.742573	1031.47059	-1.4804	-0.000765	-0.965	-0.00049866	-2.4454	-0.0012637	516.7419356557452	70.085	0.32425	70.085	69.922	70.246	0					11	7	2	0	0	0	0.027418	1	6716	6716		71.877	18.526	1	169080			3110	12361	2320	2330	4381	4381					-0.043882547106022685
CEECGKGFNRP	11	Unmodified	_CEECGKGFNRP_					0	0	0		ENST00000380882.5_4:85656-87337:+|nuORF	ENST00000380882.5_4:85656-87337:+|nuORF	ENST00000380882.5_4:85656-87337:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	620.2669677734375	2	620.26589	1238.51723	1.805	0.0011196	3.6864	0.0022866	5.4915	0.0034062	620.2680402801293	95.444	1.5488	95.444	95.161	96.71	0					75	36	3	0	0	0	0.50928	1	10442	10442		52.937	2.9122	1	7228300			3111	11154	2321	2331	4382	4382					-0.09249138150971703
CEEEEAMTP	9	Unmodified	_CEEEEAMTP_					0	0	0		nc|ENSG00000179362|Q86SG4-3|HMGN2P46;nc|ENSG00000179362|Q86SG4-2|HMGN2P46;nc|ENSG00000179362|Q86SG4|HMGN2P46	nc|ENSG00000179362|Q86SG4-3|HMGN2P46	nc|ENSG00000179362|Q86SG4-3|HMGN2P46	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.7631225585938	2	519.691358	1037.36816	1.6289	0.00084655	4.1856	0.0021752	5.8145	0.0030217	519.6933232205129	118.09	0.36961	118.09	117.93	118.3	0					14	7	2	0	0	0	0.027462	1	13561	13561		15.642	0	1	104120			3112	15201	2322	2332	4383	4383					-0.14902708564386558
CEEEGSDAEN	10	Unmodified	_CEEEGSDAEN_					0	0	0			REV__ENSG00000141298|ENST00000540801|SSH2	REV__ENSG00000141298|ENST00000540801|SSH2	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.3460693359375	2	541.682575	1081.3506	-0.54661	-0.00029609	-3.9471	-0.0021381	-4.4938	-0.0024342	542.18389809395	82.677	0.29422	80.381	80.235	80.53	-2.2963					8	5	2	0	0	0	0.026994	1	4685	4685		19.104	0	1	10589	+		3113	19725	2323	2333	4384	4384					-0.18682332565663273
CEERHPDEI	9	Unmodified	_CEERHPDEI_					0	0	0		ENST00000448331.7_2_17:16704364-16705764:+|nuORF	ENST00000448331.7_2_17:16704364-16705764:+|nuORF	ENST00000448331.7_2_17:16704364-16705764:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.31787109375	2	564.242938	1126.47132	1.5657	0.00088346	-4.4487	-0.0025102	-2.883	-0.0016267	564.240183596026	112.95	1.318	111.5	111.16	112.48	-1.4461					61	26	4	0	0	0	0.027462	1	10499	10499		30.504	18.993	1	255280			3114	12017	2324	2334	4385	4385					-0.08685460061542472
CEERHPDEI	9	Unmodified	_CEERHPDEI_					0	0	0		ENST00000448331.7_2_17:16704364-16705764:+|nuORF	ENST00000448331.7_2_17:16704364-16705764:+|nuORF	ENST00000448331.7_2_17:16704364-16705764:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	564.242938	1126.47132	0.66631	0.00037596	-3.8768	-0.0021875	-3.2105	-0.0018115	564.2406031500303	111.96	1.1826	111.82	111.42	112.61	-0.13961	0.21067	9.7218E-05	NaN	23.042	60	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135620			3115	12017	2324	2334							-0.08685460061542472
CEERHPDEI	9	Unmodified	_CEERHPDEI_					0	0	0		ENST00000448331.7_2_17:16704364-16705764:+|nuORF	ENST00000448331.7_2_17:16704364-16705764:+|nuORF	ENST00000448331.7_2_17:16704364-16705764:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	564.242938	1126.47132	1.3871	0.00078267	-4.7395	-0.0026742	-3.3523	-0.0018915	564.2401936219567	112.59	0.98056	111.51	111.22	112.2	-1.0753	-0.099448	-0.00087629	NaN	23.042	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218740			3116	12017	2324	2334							-0.08685460061542472
CEGRGGKK	8	Unmodified	_CEGRGGKK_					0	0	0		DNAJA1|p.T279Ifs*26|1|0.14|ENSG00000086061|chr9:33036651-33036651|C/-|frameshift_variant;nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;NFX1-DNAJA1|1|fusion	DNAJA1|p.T279Ifs*26|1|0.14|ENSG00000086061|chr9:33036651-33036651|C/-|frameshift_variant	DNAJA1|p.T279Ifs*26|1|0.14|ENSG00000086061|chr9:33036651-33036651|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	417.71795654296875	2	417.716162	833.41777	1.3381	0.00055895	1.7643	0.00073697	3.1024	0.0012959	417.7167388697413	158.03	2.1569	158.03	157.65	159.81	0					84	44	3	0	0	0	0.75241	1	18578	18578		25.45	0.94616	1	192830			3117	750	2325	2335	4386	4386					-0.005601679827350381
CEIHTSLELV	10	Unmodified	_CEIHTSLELV_					0	0	0		ENST00000378319.7_1_13:50102828-50102939:+|nuORF	ENST00000378319.7_1_13:50102828-50102939:+|nuORF	ENST00000378319.7_1_13:50102828-50102939:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	572.2919311523438	2	572.289356	1142.56416	1.9792	0.0011327	0.89733	0.00051353	2.8765	0.0016462	572.2898241875617	122.08	1.8537	122.08	121.71	123.56	0					122	39	6	0	0	0	0.64063	1	14114	14114		37.159	1.5408	1	9288900			3118	11106	2326	2336	4387	4387					-0.0014195532817211642
CEIIWHEDI	9	Unmodified	_CEIIWHEDI_					0	0	0			REV__ENSG00000130005|ENST00000252288|GAMT	REV__ENSG00000130005|ENST00000252288|GAMT	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.8357543945312	2	579.268424	1156.5223	1.6822	0.00097444	4.0183	0.0023277	5.7005	0.0033021	579.270298966764	96.947	0.60066	96.947	96.753	97.353	0					28	13	3	0	0	0	0.027433	1	10668	10668		60.972	26.799	1	446880	+		3119	18914	2327	2337	4388	4388					-0.04970511016676937
CEIYIGFFL	9	Unmodified	_CEIYIGFFL_					0	0	0		ENST00000378993.5_1_X:28605588-28605681:+|nuORF	ENST00000378993.5_1_X:28605588-28605681:+|nuORF	ENST00000378993.5_1_X:28605588-28605681:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.3245239257812	2	552.775354	1103.53615	-0.63947	-0.00035348	-0.27131	-0.00014997	-0.91078	-0.00050346	552.7751162902251	28.976	0.29836	28.976	28.838	29.137	0					8	5	2	0	0	0	0.027462	1	1006	1006		35.201	8.4046	1	24833			3120	11115	2328	2338	4389	4389					-0.011472335175994886
CELAAALNLP	10	Unmodified	_CELAAALNLP_					0	0	0		nc|ENSG00000106038|P49640-2|EVX1;ENSG00000106038|ENST00000496902|EVX1;ENSG00000174279|ENST00000308618|EVX2	nc|ENSG00000106038|P49640-2|EVX1	nc|ENSG00000106038|P49640-2|EVX1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7660827636719	2	507.76806	1013.52157	0.43978	0.0002233	-3.6428	-0.0018497	-3.203	-0.0016264	507.76605298589374	131.19	1.6749	130.96	130.26	131.93	-0.22696					79	33	3	0	0	0	0.72319	1	12946	12946		27.882	1.0861	1	124560			3121	2525	2329	2339	4390	4390					0.01534694334247888
CENFYSFMI	9	Unmodified	_CENFYSFMI_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L;SAMD9L|p.M892I|1|0.12|ENSG00000177409|chr7:93133296-93133296|C/T|missense_variant	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	MULTI-MSMS	OvCa99_classI_Rep5	1	577.2378540039062	2	577.238278	1152.462	0.74375	0.00042932	-1.6891	-0.00097499	-0.9453	-0.00054567	577.2370669881279	90.996	1.0156	90.996	90.738	91.753	0					65	24	4	0	0	0	0.37135	1	9797	9797		54.776	5.2403	1	9884300			3122	7677	2330	2340	4391	4391					-0.10812944671420155
CEPRCPLGVL	10	Unmodified	_CEPRCPLGVL_					0	0	0			REV__ENST00000594125.1_1_19:35832003-35832498:+|nuORF	REV__ENST00000594125.1_1_19:35832003-35832498:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	543.7763061523438	2	543.775362	1085.53617	1.3954	0.00075878	-0.76199	-0.00041435	0.63341	0.00034443	543.7747717766887	98.424	0.63019	98.424	98.247	98.877	0					32	14	3	0	0	0	0.48198	1	10846	10846		56.721	7.2795	1	1919900	+		3123	27975	2331	2341	4392	4392					-0.0031755678924128006
CEPSRGPAAP	10	Unmodified	_CEPSRGPAAP_					0	0	0			REV__ENST00000483222.5_1_22:50688495-50689613:-|nuORF	REV__ENST00000483222.5_1_22:50688495-50689613:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.76568603515625	2	492.732009	983.449465	0.53134	0.00026181	-2.4088	-0.0011869	-1.8774	-0.00092506	492.73112756949894	81.393	0.32608	81.393	81.206	81.532	0					13	7	2	0	0	0	0.026582	1	8368	8368		51.335	7.2187	1	210800	+		3124	26519	2332	2342	4393	4393					-0.04292220019465276
CERHLRRKHLK	11	Unmodified	_CERHLRRKHLK_					0	0	0		RREB1|p.K720R|1|0.04|ENSG00000124782|chr6:7230258-7230258|A/G|missense_variant	RREB1|p.K720R|1|0.04|ENSG00000124782|chr6:7230258-7230258|A/G|missense_variant	RREB1|p.K720R|1|0.04|ENSG00000124782|chr6:7230258-7230258|A/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.2762145996094	3	492.621127	1474.84155	-1.0752	-0.00052965	-2.7676	-0.0013634	-3.8428	-0.0018931	492.61974952109574	27.029	0.39965	27.029	26.841	27.241	0					18	7	4	0	0	0	0.026364	1	780	780		13.508	4.2961	1	66802			3125	32792	2333	2343	4394	4394					0.12312595118987701
CEVDLVKGGH	10	Unmodified	_CEVDLVKGGH_					0	0	0		ENSG00000103528|ENST00000355377|SYT17	ENSG00000103528|ENST00000355377|SYT17	ENSG00000103528|ENST00000355377|SYT17	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.3241577148438	2	528.760766	1055.50698	1.6791	0.00088785	3.2962	0.0017429	4.9753	0.0026307	528.762392026507	136.26	0.82782	134.72	134.4	135.23	-1.5437					30	16	2	0	0	0	0.026849	1	13262	13262		40.778	16.259	1	37303			3126	2325	2334	2344	4395	4395					-0.018553778138766575
CEVRVLMLL	9	Oxidation (M)	_CEVRVLM(Oxidation (M))LL_		CEVRVLM(1)LL		CEVRVLM(66)LL	0	0	1		ENSG00000104960|ENST00000391842|PTOV1;nc|ENSG00000104960|Q86YD1-2|PTOV1;nc|ENSG00000104960|Q86YD1-3|PTOV1;ENST00000595934.1_1_19:50360240-50360429:+|nuORF;nc|ENSG00000104973|Q71SY5-6|MED25;nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25;ENST00000594998.1_1_19:50338170-50339752:+|nuORF;MED25|p.D529Rfs*67|1|0.03|ENSG00000104973|chr19:49835087-49835090|CGAC/-|frameshift_variant	ENSG00000104960|ENST00000391842|PTOV1;nc|ENSG00000104973|Q71SY5-6|MED25	ENSG00000104960|ENST00000391842|PTOV1	MULTI-MSMS	OvCa9_classI_Rep2	2	546.302978515625	2	546.301213	1090.58787	-0.2131	-0.00011642	2.7784	0.0015178	2.5653	0.0014014	546.3025770219067	114.62	1.3818	114.5	114.16	115.54	-0.11777					62	27	3	0	0	0	0.27001	1	10921	10921		66.429	6.311	1	158540			3127	2411;2413	2335	2345	4396	4396		80			0.0462018690466266
CFCFLVFCFL	10	Unmodified	_CFCFLVFCFL_					0	0	0			REV__ENST00000494627.1_1_16:58743149-58750060:-|nuORF	REV__ENST00000494627.1_1_16:58743149-58750060:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.90850830078125	3	414.523382	1240.54832	0.21118	8.7541E-05	4.3183	0.0017901	4.5295	0.0018776	414.85780181882984	42.438	0.37881	42.438	42.286	42.665	0					11	8	2	0	0	0	0.027007	1	2753	2753		18.262	0	1	66208	+		3128	26731	2336	2346	4397	4397					-0.062336563704320724
CFCGRLVKQHA	11	Unmodified	_CFCGRLVKQHA_					0	0	0		ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	MULTI-SECPEP	OvCa99_classI_Rep5	1	632.3054809570312	2	631.31826	1260.62197	1.5409	0.00097282	-3.9194	-0.0024744	-2.3785	-0.0015016	631.3157487782149	109.7	0.35564	109.7	109.55	109.9	0					12	7	2	0	0	0	0.025746	1	12415	12415		25.574	0	1	141360			3129	1894	2337	2347	4398	4398					0.0020802811625344475
CFCYGLYIV	9	Unmodified	_CFCYGLYIV_					0	0	0			REV__ENST00000394321.9_1_19:7591427-7598678:+|nuORF	REV__ENST00000394321.9_1_19:7591427-7598678:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.3028564453125	2	540.748282	1079.48201	-1.1547	-0.00062441	-1.2149	-0.00065694	-2.3696	-0.0012814	540.746360003323	123.96	0.1465	122.57	122.47	122.62	-1.3908					4	2	2	0	0	0	0.027462	1	11742	11742		39.021	17.319	1	5033.7	+		3130	17231	2338	2348	4399	4399					-0.05455148940836807
CFCYGLYIV	9	Unmodified	_CFCYGLYIV_					0	0	0			REV__ENST00000394321.9_1_19:7591427-7598678:+|nuORF	REV__ENST00000394321.9_1_19:7591427-7598678:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	540.748282	1079.48201	1.9734	0.0010671	-5.81	-0.0031417	-3.8365	-0.0020746	540.7448794951024	123.37	0.25549	122.34	122.26	122.51	-1.0377	-0.11569	-0.0018493	NaN	39.021	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9949.7	+		3131	17231	2338	2348							-0.05455148940836807
CFFPIFVDL	9	Unmodified	_CFFPIFVDL_					0	0	0		L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|359|3|anti-sense	L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|359|3|anti-sense	L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|359|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.2937622070312	2	550.777896	1099.54124	1.383	0.00076175	-0.58032	-0.00031963	0.80272	0.00044212	550.7761374999131	105.86	1.1451	105.86	105.57	106.72	0					46	25	3	0	0	0	0.027462	1	11918	11918		31.955	5.2619	1	263090			3132	14708	2339	2349	4400	4400					-0.00454929654983971
CFGGQRVRLD	10	Unmodified	_CFGGQRVRLD_					0	0	0		ENST00000473614.1_1_2:216229565-216230414:-|nuORF	ENST00000473614.1_1_2:216229565-216230414:-|nuORF	ENST00000473614.1_1_2:216229565-216230414:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	575.7967529296875	2	575.792932	1149.57131	-0.86878	-0.00050024	4.1426	0.0023853	3.2738	0.001885	575.7951372514635	103.58	0.97464	103.58	103.3	104.28	0					42	22	4	0	0	0	0.45225	1	11575	11575		60.972	15	1	4584500			3133	12414	2340	2350	4401	4401					0.00250822062912448
CFGLRGLLH	9	Unmodified	_CFGLRGLLH_					0	0	0		nc|ENSG00000168615|Q13443-2|ADAM9;ENSG00000168615|ENST00000487273|ADAM9	nc|ENSG00000168615|Q13443-2|ADAM9	nc|ENSG00000168615|Q13443-2|ADAM9	MULTI-MSMS	OvCa9_classI_Rep2	2	508.2806396484375	2	508.278929	1014.54331	-0.20618	-0.0001048	2.4383	0.0012394	2.2322	0.0011346	508.2799030365451	45.056	1.2995	42.347	42	43.3	-2.7097					53	25	4	0	0	0	0.25214	1	2604	2604		68.485	10.673	1	206910			3134	6925	2341	2351	4402	4402					0.036615438734884265
CFGLRGLLH	9	Unmodified	_CFGLRGLLH_					0	0	0		nc|ENSG00000168615|Q13443-2|ADAM9;ENSG00000168615|ENST00000487273|ADAM9	nc|ENSG00000168615|Q13443-2|ADAM9	nc|ENSG00000168615|Q13443-2|ADAM9	MULTI-MATCH	OvCa99_classI_Rep5	1		2	508.278929	1014.54331	-0.4863	-0.00024718	5.9517	0.0030251	5.4654	0.002778	508.2817377004888	42.503	0.55305	42.503	42.329	42.883	0	0.17481	0.0027445	NaN	68.485	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222500			3135	6925	2341	2351							0.036615438734884265
CFHYTSTV	8	Unmodified	_CFHYTSTV_					0	0	0		nc|ENSG00000186642|O00408-5|PDE2A;nc|ENSG00000186642|O00408-6|PDE2A;ENST00000539367.5_1_11:72287653-72353469:-|nuORF;nc|ENSG00000186642|O00408-2|PDE2A;nc|ENSG00000186642|O00408-4|PDE2A;nc|ENSG00000186642|O00408-3|PDE2A;ENSG00000186642|ENST00000334456|PDE2A	nc|ENSG00000186642|O00408-5|PDE2A	nc|ENSG00000186642|O00408-5|PDE2A	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.74365234375	2	479.210378	956.406203	-0.75873	-0.00036359	-2.0662	-0.00099015	-2.8249	-0.0013537	479.20945969119407	37.194	0.32269	37.194	37.069	37.391	0					14	6	3	0	0	0	0.028476	1	2012	2012		28.254	0	1	141150			3136	8352	2342	2352	4403	4403					-0.0737440979675057
CFIVFPFHSK	10	Unmodified	_CFIVFPFHSK_					0	0	0			REV__ENST00000420455.5_1_21:34823077-34823134:-|nuORF	REV__ENST00000420455.5_1_21:34823077-34823134:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	408.9060363769531	3	408.879322	1223.61614	0.84289	0.00034464	3.2738	0.0013386	4.1167	0.0016832	408.88062577003717	20.888	0.28171	19.55	19.456	19.737	-1.3386					6	5	2	0	0	0	0.027117	1	117	117		21.686	0	1	5686.5	+		3137	25592	2343	2353	4404	4404					0.013272528762172442
CFLFLFLCV	9	Unmodified	_CFLFLFLCV_					0	0	0		ENST00000430767.8_1_17:75212554-75212710:+|nuORF	ENST00000430767.8_1_17:75212554-75212710:+|nuORF	ENST00000430767.8_1_17:75212554-75212710:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	552.7844848632812	2	552.784667	1103.55478	1.7554	0.00097038	1.4723	0.00081389	3.2278	0.0017843	552.7854142273841	29.865	0.63211	27.155	26.975	27.607	-2.7097					29	12	3	0	0	0	0.68641	1	799	799		21.702	3.3779	1	49044			3138	11791	2344	2354	4405	4405					0.007146048525783044
CFLIYILCF	9	Unmodified	_CFLIYILCF_					0	0	0		ENST00000415807.6_1_3:172115292-172115697:+|nuORF	ENST00000415807.6_1_3:172115292-172115697:+|nuORF	ENST00000415807.6_1_3:172115292-172115697:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	567.7935791015625	2	567.789949	1133.56535	1.4773	0.0008388	4.1965	0.0023828	5.6739	0.0032216	567.7921752278237	89.526	1.4353	88.224	87.642	89.077	-1.302					99	28	6	0	0	0	0.32242	1	7885	7885		60.404	9.2109	1	378540			3139	11593	2345	2355	4406	4406					0.0039058750703588885
CFLMISHPL	9	Unmodified	_CFLMISHPL_					0	0	0		ENST00000254654.7_1_2:239098583-239103478:-|nuORF;ENST00000467133.5_1_2:239098583-239112329:-|nuORF	ENST00000254654.7_1_2:239098583-239103478:-|nuORF	ENST00000254654.7_1_2:239098583-239103478:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	530.7745361328125	2	530.769548	1059.52454	1.5762	0.00083659	3.2254	0.001712	4.8016	0.0025486	530.7711398999143	148.39	0.9857	148.39	147.98	148.97	0					48	19	4	0	0	0	0.39645	1	17356	17356		52.299	1.1065	1	279470			3140	9813	2346	2356	4407	4407					-0.002837538125959327
CFPIFTVIIL	10	Unmodified	_CFPIFTVIIL_					0	0	0			REV__nc|ENSG00000144857|Q9BWV1|BOC	REV__nc|ENSG00000144857|Q9BWV1|BOC	MULTI-MSMS	OvCa99_classI_Rep5	1	583.3363647460938	2	583.338121	1164.66169	0.47641	0.00027791	-4.2629	-0.0024867	-3.7865	-0.0022088	583.3354161510537	140.18	1.0569	140.18	139.92	140.98	0					55	21	4	0	0	0	0.56767	1	16364	16364		45.952	3.5558	1	432070	+		3141	19940	2347	2357	4408	4408					0.08594478338636691
CFPKGDHEA	9	Unmodified	_CFPKGDHEA_					0	0	0			REV__ENSG00000182809|ENST00000329146|CRIP2	REV__ENSG00000182809|ENST00000329146|CRIP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.21795654296875	2	502.218734	1002.42292	-2.0389	-0.001024	3.4579	0.0017366	1.419	0.00071264	502.21966383930453	126.95	0.89249	125.52	125.24	126.14	-1.4357					60	17	5	0	0	0	0.62352	1	12096	12096		29.15	1.0681	1	44633	+		3142	22319	2348	2358	4409	4409					-0.07819908910789763
CFPKGDHEA	9	Unmodified	_CFPKGDHEA_					0	0	0			REV__ENSG00000182809|ENST00000329146|CRIP2	REV__ENSG00000182809|ENST00000329146|CRIP2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	502.218734	1002.42292	0.079689	4.0021E-05	0.55153	0.00027699	0.63122	0.00031701	502.2186731958049	125.89	0.73895	125.66	125.45	126.19	-0.2359	0.075591	-0.00064559	NaN	29.15	41	14	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31606	+		3143	22319	2348	2358							-0.07819908910789763
CFPKGDHEA	9	Unmodified	_CFPKGDHEA_					0	0	0			REV__ENSG00000182809|ENST00000329146|CRIP2	REV__ENSG00000182809|ENST00000329146|CRIP2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	502.218734	1002.42292	0.91352	0.00045879	0.49334	0.00024776	1.4069	0.00070655	502.2184335871094	126.64	0.78783	125.57	125.28	126.07	-1.0715	-0.010855	-0.00070404	NaN	29.15	41	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65889	+		3144	22319	2348	2358							-0.07819908910789763
CFPSPSLSTW	10	Unmodified	_CFPSPSLSTW_					0	0	0		ENST00000279249.2_1_11:65089055-65089217:+|nuORF	ENST00000279249.2_1_11:65089055-65089217:+|nuORF	ENST00000279249.2_1_11:65089055-65089217:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.359130859375	2	562.757692	1123.50083	0.66795	0.0003759	-3.8273	-0.0021538	-3.1593	-0.0017779	562.7549454952908	93.395	0.29581	90.888	90.763	91.059	-2.5072					8	5	2	0	0	0	0.027021	1	8158	8158		29.15	0	1	24602			3145	10038	2349	2359	4410	4410					-0.05597896045424022
CFRLVKPLSA	10	Unmodified	_CFRLVKPLSA_					0	0	0			REV__ENST00000531325.5_1_1:85403252-85462600:-|nuORF	REV__ENST00000531325.5_1_1:85403252-85462600:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	567.330078125	2	567.328619	1132.64269	-2.3399	-0.0013275	4.3821	0.0024861	2.0422	0.0011586	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.69073	1	14535	14535		31.53	2.3598	1	241060	+		3146	20351	2350	2360	4411	4411					0.0816694176760393
CFSKTSLLPI	10	Unmodified	_CFSKTSLLPI_					0	0	0		nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;ENST00000539659.5_1_12:14576849-14613468:+|nuORF;ENST00000541654.1_1_12:14538317-14613468:+|nuORF	nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	MSMS	OvCa99_classI_Rep5	1	554.8111572265625	2	554.807185	1107.59982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.747	1	66.747	66.247	67.247	0								0	0	0	0.15238	1	6205	6205		47.657	1.2006	1				3147	7223	2351	2361	4412	4412					0.050321269195137575
CFWPFIYLI	9	Unmodified	_CFWPFIYLI_					0	0	0			REV__nc|ENSG00000091542|Q6P6C2-1|ALKBH5	REV__nc|ENSG00000091542|Q6P6C2-1|ALKBH5	MULTI-MSMS	OvCa9_classI_Rep3	3	601.3082275390625	2	601.309364	1200.60417	3.2383	0.0019472	-4.363	-0.0026235	-1.1246	-0.00067626	601.30656603052	121.18	1.2559	120.15	119.86	121.11	-1.0271					47	23	5	0	0	0	0.53728	1	9271	9271		39.021	1.8624	1	243140	+		3148	28758	2352	2362	4413	4413					0.01189636133062777
CFWVLEVTP	9	Unmodified	_CFWVLEVTP_					0	0	0		ENST00000377658.8_1_1:6653013-6653397:-|nuORF	ENST00000377658.8_1_1:6653013-6653397:-|nuORF	ENST00000377658.8_1_1:6653013-6653397:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.3102416992188	2	547.272978	1092.5314	0.81209	0.00044443	-1.9314	-0.001057	-1.1193	-0.00061257	547.2717768972675	132.55	0.28677	132.55	132.32	132.6	0					8	5	2	0	0	0	0.027441	1	15389	15389		37.159	4.3467	1	34836			3149	11090	2353	2363	4414	4414					-0.011161176603764034
CGAAGPGG	8	Unmodified	_CGAAGPGG_					0	0	0		ENST00000357022.6_2_2:61404681-61404921:+|nuORF	ENST00000357022.6_2_2:61404681-61404921:+|nuORF	ENST00000357022.6_2_2:61404681-61404921:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.8167114257812	1	589.239872	588.232595	0.065157	3.8393E-05	-2.9956	-0.0017651	-2.9304	-0.0017267	589.237849362237	70.941	0.34941	70.941	70.681	71.031	0					11	8	2	0	0	0	0.028476	1	6820	6820		10.185	0	1	77215			3150	10707	2354	2364	4415	4415					-0.07799150782352626
CGDDTCLI	8	Unmodified	_CGDDTCLI_					0	0	0		tr|A0A553SQ40|A0A553SQ40_NIACIArgininerepressorOS=NialliacirculansOX=1397GN=argRPE=3SV=1	tr|A0A553SQ40|A0A553SQ40_NIACIArgininerepressorOS=NialliacirculansOX=1397GN=argRPE=3SV=1	tr|A0A553SQ40|A0A553SQ40_NIACIArgininerepressorOS=NialliacirculansOX=1397GN=argRPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	420.23541259765625	2	420.167321	838.32009	-0.62405	-0.0002622	0.19601	8.2357E-05	-0.42804	-0.00017985	420.1673644127176	92.572	0.70552	90.61	90.423	91.128	-1.9617					21	14	2	0	0	0	0.028476	1	5858	5858		25.45	0	1	40572			3151	34116	2355	2365	4416	4416					-0.10553737693760468
CGFAAMKDVRT	11	Unmodified	_CGFAAMKDVRT_					0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	MULTI-MSMS	OvCa99_classI_Rep5	1	400.19488525390625	3	400.195093	1197.56345	1.0128	0.00040532	-3.6542	-0.0014624	-2.6414	-0.0010571	400.1935428593961	48.296	1.2212	48.296	47.854	49.075	0					60	27	3	0	0	0	0.55686	1	3528	3528		48.602	15.851	1	3883700			3152	3177	2356	2366	4417	4417					-0.02743073248871042
CGGPKAPAL	9	Unmodified	_CGGPKAPAL_					0	0	0		ENST00000409786.1_1_2:171570143-171571073:-|nuORF	ENST00000409786.1_1_2:171570143-171571073:-|nuORF	ENST00000409786.1_1_2:171570143-171571073:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	407.2178039550781	2	407.218006	812.421459	0.96186	0.00039169	0.70041	0.00028522	1.6623	0.0006769	407.21814179662977	104.78	1.7329	102.66	102.01	103.74	-2.1192					70	33	3	0	0	0	0.52083	1	9497	9497		40.573	3.5441	1	176220			3153	11535	2357	2367	4418	4418					0.007745017911020113
CGGPKAPAL	9	Unmodified	_CGGPKAPAL_					0	0	0		ENST00000409786.1_1_2:171570143-171571073:-|nuORF	ENST00000409786.1_1_2:171570143-171571073:-|nuORF	ENST00000409786.1_1_2:171570143-171571073:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	407.218006	812.421459	0.36365	0.00014809	1.2022	0.00048956	1.5659	0.00063765	407.2183828361274	103.4	1.3817	102.72	102.13	103.51	-0.68459	0.047803	0.00029322	NaN	40.573	55	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66436			3154	11535	2357	2367							0.007745017911020113
CGGSRDGL	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))CGGSRDGL_					1	0	0			REV__ENST00000531214.5_1_11:795151-797626:-|nuORF	REV__ENST00000531214.5_1_11:795151-797626:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	403.6784973144531	2	403.676702	805.338851	1.3559	0.00054733	0.034638	1.3983E-05	1.3905	0.00056131	403.6765655720515	58.392	0.62081	58.392	58.153	58.774	0					34	14	4	0	0	0	0.7043	1	4961	4961		42.474	8.9589	1	1532500	+		3155	27213	2358	2368	4419	4419					-0.07160440007703528
CGIKAWLATF	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))GIKAWLATF_	C(1)GIKAWLATF		C(42)GIKAWLATF		0	1	0			REV__ENST00000568863.1_1_15:52906041-52970258:-|nuORF	REV__ENST00000568863.1_1_15:52906041-52970258:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	583.8018188476562	2	583.804977	1165.5954	-1.251	-0.00073034	-3.1704	-0.0018509	-4.4214	-0.0025813	583.8030699874896	54.091	2.1426	51.277	50.677	52.82	-2.8139					121	42	5	0	0	0	0.59703	1	3732	3732		42.396	6.7778	1	1035800	+		3156	27718	2359	2369	4420	4420	340				0.019226624965540395
CGLRKVRGL	9	Unmodified	_CGLRKVRGL_					0	0	0			REV__UBE2O|p.E1121Rfs*4|1|0.12|ENSG00000175931|chr17:76391461-76391462|-/G|frameshift_variant	REV__UBE2O|p.E1121Rfs*4|1|0.12|ENSG00000175931|chr17:76391461-76391462|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.3035888671875	2	501.305478	1000.5964	-1.4604	-0.00073208	-2.6521	-0.0013295	-4.1125	-0.0020616	501.3040153860226	45.537	1.2533	42.498	42.127	43.38	-3.0385					70	23	4	0	0	0	0.59983	1	2342	2342		31.955	1.4512	1	431080	+		3157	21924	2360	2370	4421	4421					0.09612921656150775
CGPGRWEGPG	10	Unmodified	_CGPGRWEGPG_					0	0	0		ENST00000530567.1_1_11:64976762-64977505:+|nuORF	ENST00000530567.1_1_11:64976762-64977505:+|nuORF	ENST00000530567.1_1_11:64976762-64977505:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.267822265625	2	508.224351	1014.43415	-1.3628	-0.0006926	1.0438	0.00053048	-0.31898	-0.00016211	508.2251307351498	86.947	0.35251	84.77	84.683	85.036	-2.1768					9	6	2	0	0	0	0.026871	1	5230	5230		37.159	9.2769	1	22336			3158	13291	2361	2371	4422	4422					-0.07249086816648287
CGPLGTLWIVK	11	Carbamidomethyl (C)	_C(Carbamidomethyl (C))GPLGTLWIVK_	C(1)GPLGTLWIVK		C(65)GPLGTLWIVK		0	1	0			REV__tr|A0A7D6ZQJ5|A0A7D6ZQJ5_9CLOTsulfateadenylyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00570PE=3SV=1	REV__tr|A0A7D6ZQJ5|A0A7D6ZQJ5_9CLOTsulfateadenylyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00570PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	622.3447875976562	2	622.347009	1242.67946	-1.5822	-0.00098469	3.2053	0.0019948	1.6231	0.0010101	622.3488602972496	119.44	1.6147	118.1	117.78	119.4	-1.3444					76	30	4	0	0	0	0.34051	2	11237	11201;11237		65.465	17.506	1	425170	+		3159	32149	2362	2372	4423;4424	4424	373				0.0678319359346915
CGSSCAENLLI	11	Unmodified	_CGSSCAENLLI_					0	0	0			REV__tr|A0A7D6VP23|A0A7D6VP23_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14975PE=4SV=1	REV__tr|A0A7D6VP23|A0A7D6VP23_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14975PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	555.2544555664062	2	555.251917	1108.48928	1.5035	0.00083482	1.7524	0.00097303	3.2559	0.0018079	555.2525097281025	149.56	0.88715	149.56	149.21	150.1	0					40	17	4	0	0	0	0.61983	1	17531	17531		42.864	3.6114	1	156910	+		3160	31224	2363	2373	4425	4425					-0.06062461131045893
CHALLSLLLP	10	Unmodified	_CHALLSLLLP_					0	0	0			REV__nc|ENSG00000211667|A0A075B6K2|IGLV3-12	REV__nc|ENSG00000211667|A0A075B6K2|IGLV3-12	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.7994384765625	2	540.31772	1078.62089	-0.55314	-0.00029887	-1.9184	-0.0010366	-2.4716	-0.0013354	540.8179363073322	29.041	0.59798	29.041	28.789	29.387	0					21	11	4	0	0	0	0.026915	1	978	978		20.947	1.587	1	137190	+		3161	29111	2364	2374	4426	4426					0.0847213701902092
CHFILIVRKD	10	Unmodified	_CHFILIVRKD_					0	0	0			REV__nc|ENSG00000101224|P30305-3|CDC25B	REV__nc|ENSG00000101224|P30305-3|CDC25B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	415.2133483886719	3	415.237509	1242.6907	-0.93158	-0.00038683	1.3729	0.00057007	0.44129	0.00018324	415.2375921463313	43.572	0.46405	40.565	40.378	40.842	-3.0074					12	8	2	0	0	0	0.027021	1	2132	2132		10.587	3.5681	1	8450.6	+		3162	17484	2365	2375	4427	4427					0.07906015687626677
CHGKLKTL	8	Unmodified	_CHGKLKTL_					0	0	0			REV__ENSG00000039537|ENST00000337836|C6	REV__ENSG00000039537|ENST00000337836|C6	MULTI-SECPEP	OvCa9_classI_Rep3	3	450.2828369140625	2	450.260205	898.505857	-0.82294	-0.00037054	1.7183	0.0007737	0.89539	0.00040316	450.2596769460739	82.885	0.14912	80.589	80.48	80.629	-2.2963					4	2	2	0	0	0	0.028476	1	4699	4699		8.2313	3.1444	1	4148.6	+		3163	16623	2366	2376	4428	4428					0.05254452607891835
CHIHVVNEE	9	Unmodified	_CHIHVVNEE_					0	0	0			REV__chr11:12997086-13001090|278|10.34|0.0|19.98|-|1|TE_info:L1PA13,L1PA13_dup6381,L1,LINE,acceptor,-,12995692,12997086|None,RASSF10-DT|13	REV__chr11:12997086-13001090|278|10.34|0.0|19.98|-|1|TE_info:L1PA13,L1PA13_dup6381,L1,LINE,acceptor,-,12995692,12997086|None,RASSF10-DT|13	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.3021850585938	2	540.250566	1078.48658	-0.45739	-0.0002471	-0.91439	-0.000494	-1.3718	-0.0007411	540.2498746259802	55.206	0.66439	55.206	54.935	55.599	0					33	15	4	0	0	0	0.027462	1	4544	4544		34.173	2.6427	1	1805600	+		3164	15856	2367	2377	4429	4429					-0.04952548473670504
CHILFKRF	8	Unmodified	_CHILFKRF_					0	0	0		ENST00000354179.8_2_5:176671236-176673694:+|nuORF	ENST00000354179.8_2_5:176671236-176673694:+|nuORF	ENST00000354179.8_2_5:176671236-176673694:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.8058471679688	2	532.297122	1062.57969	-1.935	-0.00103	-2.4204	-0.0012884	-4.3554	-0.0023184	532.2959325162599	42.138	0.41494	39.158	38.801	39.216	-2.9804					13	7	2	0	0	0	0.028476	1	1906	1906		14.664	1.7049	1	78897			3165	10658	2368	2378	4430	4430					0.050904207701933046
CHLCFVLVW	9	Unmodified	_CHLCFVLVW_					0	0	0			REV__ENST00000487860.1_1_2:101024970-101025051:-|nuORF	REV__ENST00000487860.1_1_2:101024970-101025051:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	560.2755126953125	2	560.277541	1118.54053	0.059706	3.3452E-05	-4.3922	-0.0024608	-4.3325	-0.0024274	560.2749568783789	106.86	2.1744	105.6	105.27	107.44	-1.267					110	42	3	0	0	0	0.61768	1	7628	7628		29.842	4.3914	1	1807000	+		3166	26610	2369	2379	4431	4431					-0.014000475756802189
CHLFFPERA	9	Unmodified	_CHLFFPERA_					0	0	0			REV__ENST00000521433.1_1_8:89341227-89721666:+|nuORF	REV__ENST00000521433.1_1_8:89341227-89721666:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	560.2760620117188	2	560.273844	1118.53313	0.059706	3.3452E-05	2.206	0.0012359	2.2657	0.0012694	560.2749568783789	106.86	2.1744	105.6	105.27	107.44	-1.267					110	42	3	0	0	0	0.53957	2	7613	7582;7613		38.806	10.924	1	1807000	+		3167	27070	2370	2380	4432;4433	4433					-0.021390638517459593
CHLFFPERA	9	Unmodified	_CHLFFPERA_					0	0	0			REV__ENST00000521433.1_1_8:89341227-89721666:+|nuORF	REV__ENST00000521433.1_1_8:89341227-89721666:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.2767944335938	2	560.273844	1118.53313	-0.75477	-0.00042288	3.3413	0.001872	2.5865	0.0014492	560.2756192604105	107.44	1.9511	105.56	105.22	107.17	-1.8785					106	38	4	0	0	0	0.52083	2	9856	9856;9870		40.573	8.9646	1	1542600	+		3168	27070	2370	2380	4434;4435	4434					-0.021390638517459593
CHLLIKGV	8	Unmodified	_CHLLIKGV_					0	0	0		nc|ENSG00000183977|A8MPX8-2|PP2D1;nc|ENSG00000183977|A8MPX8-3|PP2D1;ENSG00000183977|ENST00000389050|PP2D1	nc|ENSG00000183977|A8MPX8-2|PP2D1	nc|ENSG00000183977|A8MPX8-2|PP2D1	MULTI-SECPEP	OvCa99_classI_Rep5	1	441.2286071777344	2	441.765123	881.515694	0.50652	0.00022376	3.8336	0.0016936	4.3402	0.0019173	441.7664758201356	52.124	0.43261	52.124	51.871	52.304	0					13	9	2	0	0	0	0.028476	1	4049	4049		19.36	0	1	160720			3169	8126	2371	2381	4436	4436					0.07019640613259526
CHNFSITK	8	Unmodified	_CHNFSITK_					0	0	0			REV__ENSG00000254466|ENST00000530162|OR4D10	REV__ENSG00000254466|ENST00000530162|OR4D10	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.24658203125	2	475.231645	948.448736	2.4913	0.001184	-4.1308	-0.0019631	-1.6395	-0.00077914	475.22944161344924	84.282	0.53833	84.282	84.051	84.589	0					18	12	2	0	0	0	0.028476	1	8822	8822		10.866	0	1	285240	+		3170	23516	2372	2382	4437	4437					-0.027550146685030086
CHNLQSYQKP	10	Unmodified	_CHNLQSYQKP_					0	0	0		MER4-int_dup2271|chr13:22891256-22892771:+|2.029533609635038|0.1446850670061226|3.81|418.0|110|3|anti-sense	MER4-int_dup2271|chr13:22891256-22892771:+|2.029533609635038|0.1446850670061226|3.81|418.0|110|3|anti-sense	MER4-int_dup2271|chr13:22891256-22892771:+|2.029533609635038|0.1446850670061226|3.81|418.0|110|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	609.3494262695312	2	609.290222	1216.56589	0.3622	0.00022068	1.2034	0.00073319	1.5656	0.00095388	609.2909629837762	57.477	1.5616	57.477	57.093	58.655	0					63	36	3	0	0	0	0.027021	1	4968	4968		10.265	0	1	287870			3171	14830	2373	2383	4438	4438					-0.033729015195604006
CHPECQPQN	9	Unmodified	_CHPECQPQN_					0	0	0		nc|ENSG00000141736|P04626-6|ERBB2;nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;ENST00000582788.5_1_17:37872360-37873734:+|nuORF;ENST00000583038.5_1_17:37872360-37881463:+|nuORF	nc|ENSG00000141736|P04626-6|ERBB2	nc|ENSG00000141736|P04626-6|ERBB2	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.2789916992188	2	528.205301	1054.39605	0.03763	1.9876E-05	-1.761	-0.00093017	-1.7234	-0.00091029	528.2043190679291	58.173	0.67024	58.173	57.818	58.488	0					23	15	2	0	0	0	0.027462	1	4900	4900		32.812	19.853	1	191490			3172	4936	2374	2384	4439	4439					-0.1289734079362006
CHPLELNDKF	10	Unmodified	_CHPLELNDKF_					0	0	0			REV__nc|ENSG00000175556|Q496Y0-2|LONRF3	REV__nc|ENSG00000175556|Q496Y0-2|LONRF3	MULTI-MSMS	OvCa9_classI_Rep3	3	608.2960815429688	2	608.294973	1214.57539	3.6539	0.0022227	-0.80473	-0.00048951	2.8492	0.0017331	608.2942855637167	59.026	3.3501	55.911	55.036	58.386	-3.1147					203	93	3	0	0	0	0.74374	1	1942	1942		25.574	2.5316	1	283460	+		3173	29016	2375	2385	4440	4440					-0.023311332340426816
CHPSYQTIN	9	Unmodified	_CHPSYQTIN_					0	0	0			REV__ENSG00000166800|ENST00000280706|LDHAL6A	REV__ENSG00000166800|ENST00000280706|LDHAL6A	MULTI-MSMS	OvCa9_classI_Rep2	2	531.7376098632812	2	531.737291	1061.46003	0.0073479	3.9071E-06	0.90633	0.00048193	0.91368	0.00048584	531.7375688517346	129.89	1.6824	129.66	129.07	130.75	-0.22697					67	33	3	0	0	0	0.65371	1	12761	12761		25.574	1.0549	1	62425	+		3174	21220	2376	2386	4441	4441					-0.06824237365003682
CHQAIVKKKI	10	Unmodified	_CHQAIVKKKI_					0	0	0			REV__ENSG00000118564|ENST00000341285|FBXL5	REV__ENSG00000118564|ENST00000341285|FBXL5	MULTI-MSMS	OvCa9_classI_Rep2	2	584.355712890625	2	584.355168	1166.69578	-2.3121	-0.0013511	4.4342	0.0025912	2.1222	0.0012401	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.82648	1	14776	14776		15.642	2.1878	1	180810	+		3175	18406	2377	2387	4442	4442					0.1191031955024755
CHQLHLSVLN	10	Unmodified	_CHQLHLSVLN_					0	0	0			REV__ENSG00000136457|ENST00000508540|CHAD	REV__ENSG00000136457|ENST00000508540|CHAD	MULTI-SECPEP	OvCa9_classI_Rep3	3	582.3328857421875	2	582.303133	1162.59171	-1.8368	-0.0010696	-2.7824	-0.0016202	-4.6193	-0.0026898	582.3012403040444	87.805	0.46367	85.628	85.396	85.86	-2.1768					13	8	2	0	0	0	0.026849	1	5298	5298		32.812	0	1	23494	+		3176	19386	2378	2388	4443	4443					0.016919927227490916
CHQQSLLGGD	10	Unmodified	_CHQQSLLGGD_					0	0	0		nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-10|TCF4;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-13|TCF4;TCF4|p.A327Hfs*64|1|0.04|ENSG00000196628|chr18:55261481-55261481|C/-|frameshift_variant;ENST00000563686.5_1_18:52937038-53128316:-|nuORF	nc|ENSG00000196628|P15884|TCF4	nc|ENSG00000196628|P15884|TCF4	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.290771484375	2	529.240198	1056.46584	0.86563	0.00045813	3.9332	0.0020816	4.7988	0.0025397	529.2421001467151	120.23	0.4915	119.2	118.97	119.46	-1.0271					17	9	2	0	0	0	0.02658	1	9133	9133		64.207	23.429	1	22490			3177	15243	2379	2389	4444	4444					-0.06013138853336386
CHQVVGVDV	9	Unmodified	_CHQVVGVDV_					0	0	0		ENSG00000187609|ENST00000340951|EXD3;ENST00000478344.6_1_9:140240296-140248823:-|nuORF;nc|ENSG00000187609|Q8N9H8-2|EXD3;ENST00000487745.5_1_9:140201404-140247406:-|nuORF;nc|ENSG00000187609|Q8N9H8-3|EXD3;ENST00000491734.6_1_9:140201404-140249090:-|nuORF	ENSG00000187609|ENST00000340951|EXD3	ENSG00000187609|ENST00000340951|EXD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.2725524902344	2	478.236927	954.459301	1.5618	0.00074691	-1.5603	-0.00074619	0.0014959	7.1538E-07	478.23615186671606	74.648	0.36363	74.648	74.517	74.88	0					14	8	2	0	0	0	0.027462	1	7398	7398		23.042	5.6775	1	178510			3178	8419	2380	2390	4445	4445					-0.01975032014070166
CHRFFKNAL	9	Unmodified	_CHRFFKNAL_					0	0	0		nc|ENSG00000241119|O60656-2|UGT1A9;ENSG00000241119|ENST00000354728|UGT1A9	nc|ENSG00000241119|O60656-2|UGT1A9	nc|ENSG00000241119|O60656-2|UGT1A9	MSMS	OvCa99_classI_Rep5	1	568.2918090820312	2	568.295111	1134.57567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	154.09	1	154.09	153.59	154.59	0								0	0	0	0.17704	1	18055	18055		38.806	0.99462	1				3179	9349	2381	2391	4446	4446					0.013763312764922375
CHSLTKEVL	9	Unmodified	_CHSLTKEVL_					0	0	0		nc|ENSG00000187790|Q8IYD8-3|FANCM;ENSG00000187790|ENST00000267430|FANCM	nc|ENSG00000187790|Q8IYD8-3|FANCM	nc|ENSG00000187790|Q8IYD8-3|FANCM	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7937622070312	2	515.273509	1028.53247	-0.34773	-0.00017918	-1.7749	-0.00091456	-2.1226	-0.0010937	515.2723581118693	77.764	0.77634	74.948	74.777	75.554	-2.8165					29	15	3	0	0	0	0.027462	1	6292	6292		24.203	0	1	134340			3180	8435	2382	2392	4447	4447					0.019340967085327065
CHTFQWHEA	9	Unmodified	_CHTFQWHEA_					0	0	0		ENSG00000182782|ENST00000328880|HCAR2	ENSG00000182782|ENST00000328880|HCAR2	ENSG00000182782|ENST00000328880|HCAR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.78271484375	2	579.742908	1157.47126	1.0065	0.00058354	3.1655	0.0018352	4.172	0.0024187	579.7447547710149	146.97	0.39014	146.97	146.72	147.11	0					13	7	2	0	0	0	0.027462	1	17191	17191		20.947	0	1	52064			3181	8025	2383	2393	4448	4448					-0.10117415270860874
CHTVPTGGLK	10	Unmodified	_CHTVPTGGLK_					0	0	0		nc|ENSG00000151612|Q17R98-2|ZNF827	nc|ENSG00000151612|Q17R98-2|ZNF827	nc|ENSG00000151612|Q17R98-2|ZNF827	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3281555175781	2	506.765852	1011.51715	-0.98797	-0.00050067	-1.9781	-0.0010024	-2.9661	-0.0015031	507.2680713371121	65.897	0.50956	65.897	65.586	66.096	0					15	12	2	0	0	0	0.026688	1	6068	6068		40.778	3.6191	1	146770			3182	15093	2384	2394	4449	4449					0.011852299113570552
CHTVVVQGVS	10	Unmodified	_CHTVVVQGVS_					0	0	0		ENSG00000198785|ENST00000361820|GRIN3A;GRIN3A|p.V600Qfs*21|1|0.05|ENSG00000198785|chr9:101670615-101670616|-/CTGG|frameshift_variant	ENSG00000198785|ENST00000361820|GRIN3A	ENSG00000198785|ENST00000361820|GRIN3A	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.3111572265625	2	514.763309	1027.51206	-2.7789	-0.0014305	1.8162	0.00093492	-0.96271	-0.00049557	514.7641648806386	104.16	0.46966	104.16	103.94	104.41	0					15	10	2	0	0	0	0.026734	1	11676	11676		39.253	21.888	1	188190			3183	8872	2385	2395	4450	4450					-0.0005907395125177572
CHVGHGPSPAH	11	Unmodified	_CHVGHGPSPAH_					0	0	0			REV__ENST00000325327.3_1_19:2429436-2429694:-|nuORF	REV__ENST00000325327.3_1_19:2429436-2429694:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7714233398438	2	549.748524	1097.4825	1.5006	0.00082493	3.1895	0.0017534	4.6901	0.0025784	549.7499046728938	127.63	0.41232	127.63	127.49	127.9	0					12	8	2	0	0	0	0.025611	1	14795	14795		20.947	0	1	36757	+		3184	24484	2386	2396	4451	4451					-0.0623459317673678
CHVMNQLVQ	9	Unmodified	_CHVMNQLVQ_					0	0	0			REV__nc|ENSG00000113448|Q08499-11|PDE4D;REV__nc|ENSG00000113448|Q08499-6|PDE4D	REV__nc|ENSG00000113448|Q08499-6|PDE4D	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3294067382812	2	536.257336	1070.50012	-0.94566	-0.00050712	0.9414	0.00050483	-0.0042642	-2.2867E-06	536.2574427710207	34.328	0.28624	34.328	34.065	34.351	0					6	5	2	0	0	0	0.027408	1	1631	1631		57.811	0	1	24745	+		3185	28802;28803	2387	2397	4452	4452					-0.03231013966114915
CHVSQDKQML	10	Unmodified	_CHVSQDKQML_					0	0	0		ENST00000529357.5_1_17:43475293-43487738:-|nuORF;ENST00000531735.5_1_17:43481393-43507645:-|nuORF;nc|ENSG00000159314|Q6ZUM4-2|ARHGAP27;ENSG00000159314|ENST00000685559|ARHGAP27;ENST00000527678.1_1_17:43482043-43510162:-|nuORF;nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27	ENST00000529357.5_1_17:43475293-43487738:-|nuORF;nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27	nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27	MULTI-MSMS	OvCa99_classI_Rep5	1	594.7810668945312	2	594.778633	1187.54271	1.6859	0.0010028	2.6141	0.0015548	4.3001	0.0025576	594.7800325018482	148.36	0.64055	148.36	148.08	148.72	0					34	12	3	0	0	0	0.55359	1	17358	17358		47.657	5.1829	1	266740			3186	6002;15123	2388	2398	4453	4453					-0.043556636285302375
CHWPSCAGPL	10	Unmodified	_CHWPSCAGPL_					0	0	0			REV__ENST00000488868.1_1_1:28537058-28556683:-|nuORF	REV__ENST00000488868.1_1_1:28537058-28556683:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.8196411132812	2	535.730954	1069.44736	1.2501	0.00066971	-2.9519	-0.0015814	-1.7018	-0.00091173	535.7292045980371	144.57	0.67946	144.57	144.31	144.99	0					28	13	3	0	0	0	0.026982	1	16880	16880		23.042	7.4007	1	113010	+		3187	26629	2389	2399	4454	4454					-0.0845897202893866
CHWWKTGQHWE	11	Unmodified	_CHWWKTGQHWE_					0	0	0			REV__ENST00000236137.9_1_1:169446483-169446612:-|nuORF	REV__ENST00000236137.9_1_1:169446483-169446612:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.7649841308594	3	499.887539	1496.64079	0.87355	0.00043668	4.2359	0.0021175	5.1094	0.0025541	499.8900498313295	127.27	0.36041	126.2	126.02	126.38	-1.0715					8	6	2	0	0	0	0.026302	1	9952	9952		22.562	0.78116	1	20221	+		3188	23805	2390	2400	4455	4455					-0.08766718988340472
CIDVYEQVEGV	11	Unmodified	_CIDVYEQVEGV_					0	0	0			REV__nc|ENSG00000164904|P49419-4|ALDH7A1	REV__nc|ENSG00000164904|P49419-4|ALDH7A1	MULTI-MSMS	OvCa9_classI_Rep3	3	627.2921752929688	2	627.289553	1252.56455	-0.11264	-7.0655E-05	2.7421	0.0017201	2.6295	0.0016495	627.2911122528155	116.66	1.4361	115.62	115.29	116.73	-1.0414					68	28	3	0	0	0	0.65063	1	8743	8743		40.058	4.9061	1	258240	+		3189	21035	2391	2401	4456	4456					-0.05162580398996397
CIEIAMCA	8	Unmodified	_CIEIAMCA_					0	0	0		ENST00000348943.7_1_19:8553882-8553954:+|nuORF	ENST00000348943.7_1_19:8553882-8553954:+|nuORF	ENST00000348943.7_1_19:8553882-8553954:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	427.18487548828125	2	427.18446	852.354367	-0.08347	-3.5657E-05	0.80474	0.00034377	0.72126	0.00030811	427.18473763833555	23.102	3.4531	23.102	22.789	26.242	0					126	69	4	0	0	0	0.75724	1	325	325		23.037	1.3344	1	216520			3190	10640	2392	2402	4457	4457					-0.0777161280650489
CIEKVIKKA	9	Unmodified	_CIEKVIKKA_					0	0	0		tr|A0A7D6ZV64|A0A7D6ZV64_9CLOTPhosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_02615PE=4SV=1	tr|A0A7D6ZV64|A0A7D6ZV64_9CLOTPhosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_02615PE=4SV=1	tr|A0A7D6ZV64|A0A7D6ZV64_9CLOTPhosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_02615PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	516.3126220703125	2	516.31772	1030.62089	-5.397	-0.0027865	-1.8495	-0.00095493	-7.2465	-0.0037415	516.3166994253895	156.49	2.0589	155.32	154.75	156.81	-1.1707					101	49	4	0	0	0	0.68424	1	13510	13510		21.96	3.6355	1	710990			3191	35792	2393	2403	4458	4458					0.10680137019016911
CIHMSRSF	8	Unmodified	_CIHMSRSF_					0	0	0			REV__ENST00000485769.5_1_1:164528617-164528677:+|nuORF	REV__ENST00000485769.5_1_1:164528617-164528677:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.7261657714844	2	490.725672	979.436791	0.26138	0.00012827	-1.9676	-0.00096556	-1.7062	-0.00083729	490.724535321605	61.906	1.1086	58.448	58.151	59.259	-3.4577					55	22	3	0	0	0	0.59148	1	4270	4270		65.803	2.2693	1	498420	+		3192	26568	2394	2404	4459	4459					-0.0537495468332736
CIHMSRSF	8	Unmodified	_CIHMSRSF_					0	0	0			REV__ENST00000485769.5_1_1:164528617-164528677:+|nuORF	REV__ENST00000485769.5_1_1:164528617-164528677:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	490.725672	979.436791	-0.76988	-0.0003778	-0.45933	-0.0002254	-1.2292	-0.0006032	490.72530313281334	61.41	1.1303	58.651	58.254	59.385	-2.7593	0.10139	0.00075422	NaN	65.803	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76110	+		3193	26568	2394	2404							-0.0537495468332736
CIHRAAGP	8	Unmodified	_CIHRAAGP_					0	0	0		nc|ENSG00000172264|A1Z1Q3|MACROD2;ENSG00000172264|ENST00000684519|MACROD2;ENST00000490428.5_1_20:13976436-14665616:+|nuORF;ENST00000545464.5_1_11:63767582-63933466:-|nuORF;ENSG00000133315|ENST00000255681|MACROD1	nc|ENSG00000172264|A1Z1Q3|MACROD2	nc|ENSG00000172264|A1Z1Q3|MACROD2	MULTI-MSMS	OvCa9_classI_Rep2	2	412.7127380371094	2	412.713422	823.412291	-0.80466	-0.00033209	0.3213	0.00013261	-0.48335	-0.00019949	412.7134511863073	119.3	1.2808	119.13	118.81	120.09	-0.17137					50	25	3	0	0	0	0.74816	1	11496	11496		15.636	1.8609	1	145920			3194	7286	2395	2405	4460	4460					-0.006478467745637317
CIIHELVD	8	Carbamidomethyl (C)	_C(Carbamidomethyl (C))IIHELVD_	C(1)IIHELVD		C(55)IIHELVD		0	1	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;ABCA13|p.H2244Nfs*10|1|0.05|ENSG00000179869|chr7:48276379-48276380|-/TAACCTTATCTTGAACAATATAAGGTTAATGAAATTCATTATA|frameshift_variant	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MSMS	OvCa99_classI_Rep5	1	499.75372314453125	2	499.75241	997.490267	0.50526	0.0002525	2.658	0.0013283	3.1632	0.0015808	499.7536570034027	141.15	0.90421	141.15	140.83	141.74	0					38	17	3	0	0	0	0.64377	1	16468	16468		54.765	6.8491	1	314390			3195	7844	2396	2406	4461	4461	74				-0.008578786998327814
CIKEVKWY	8	Unmodified	_CIKEVKWY_					0	0	0			REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.7052001953125	2	534.78097	1067.54739	0.084774	4.5336E-05	1.9008	0.0010165	1.9856	0.0010618	535.28286832441	32.267	0.24882	32.267	32.154	32.403	0					6	4	2	0	0	0	0.028476	1	1402	1402		50.025	0	1	28229	+		3196	28871	2397	2407	4462	4462					0.01631588576537979
CILGVVIETI	10	Unmodified	_CILGVVIETI_					0	0	0		tr|A0A7D7A636|A0A7D7A636_9CLOTPutativeABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08780PE=4SV=1	tr|A0A7D7A636|A0A7D7A636_9CLOTPutativeABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08780PE=4SV=1	tr|A0A7D7A636|A0A7D7A636_9CLOTPutativeABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08780PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	530.3082275390625	2	530.309561	1058.60457	-0.14461	-7.6688E-05	-3.4911	-0.0018514	-3.6357	-0.0019281	530.3076035340549	118.34	1.4886	117.31	117.03	118.52	-1.0324					73	29	4	0	0	0	0.37918	1	8915	8915		71.296	2.4496	1	450800			3197	36184	2398	2408	4463	4463					0.07761011062279977
CILYSLCIPM	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))ILYSLCIPM_	C(1)ILYSLCIPM		C(59)ILYSLC(-59)IPM		0	1	0		tr|A0A7D6VTC5|A0A7D6VTC5_9CLOTProbablemultidrugresistanceproteinNorMOS=ClostridiumintestinaleOX=36845GN=HZF06_20710PE=4SV=1	tr|A0A7D6VTC5|A0A7D6VTC5_9CLOTProbablemultidrugresistanceproteinNorMOS=ClostridiumintestinaleOX=36845GN=HZF06_20710PE=4SV=1	tr|A0A7D6VTC5|A0A7D6VTC5_9CLOTProbablemultidrugresistanceproteinNorMOS=ClostridiumintestinaleOX=36845GN=HZF06_20710PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	606.7914428710938	2	606.794906	1211.57526	1.7406	0.0010562	-3.2109	-0.0019484	-1.4703	-0.0008922	606.7912067594549	148.18	0.68645	148.18	147.84	148.52	0					44	13	4	0	0	0	0.45699	1	17325	17325		60.294	14.342	2	339250			3198	35105	2399	2409	4464	4464	387				-0.022065925499191508
CINEEKNLSI	10	Unmodified	_CINEEKNLSI_					0	0	0		tr|A0A7D6ZJL1|A0A7D6ZJL1_9CLOTC-GCAxxG-C-CfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08880PE=4SV=1	tr|A0A7D6ZJL1|A0A7D6ZJL1_9CLOTC-GCAxxG-C-CfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08880PE=4SV=1	tr|A0A7D6ZJL1|A0A7D6ZJL1_9CLOTC-GCAxxG-C-CfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08880PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	580.830078125	2	581.792263	1161.56997	-1.7317	-0.0010075	-0.44732	-0.00026025	-2.1791	-0.0012678	581.7934693453841	75.687	0.50813	73.276	73.073	73.581	-2.4106					14	9	2	0	0	0	0.026803	1	3870	3870		40.058	7.3076	1	10540			3199	35646	2400	2410	4465	4465					-0.004348568164914468
CINTPGSY	8	Unmodified	_CINTPGSY_					0	0	0		ENSG00000142449|ENST00000600128|FBN3;ENSG00000146197|ENST00000274938|SCUBE3;nc|ENSG00000146197|Q8IX30-2|SCUBE3	ENSG00000142449|ENST00000600128|FBN3;ENSG00000146197|ENST00000274938|SCUBE3	ENSG00000146197|ENST00000274938|SCUBE3	MULTI-MSMS	OvCa99_classI_Rep5	1	427.6884765625	2	427.689278	853.364004	-0.45123	-0.00019299	-1.6391	-0.00070102	-2.0903	-0.00089401	427.6884457534104	44.462	0.7174	44.462	44.26	44.977	0					25	15	2	0	0	0	0.65582	1	3002	3002		52.299	6.3472	1	838020			3200	5271;4972	2401	2411	4466	4466					-0.06854385205110702
CIRHIVLV	8	Unmodified	_CIRHIVLV_					0	0	0		L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|232|1|anti-sense	L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|232|1|anti-sense	L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|232|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	476.794921875	2	476.791672	951.568792	2.0695	0.00098674	4.3346	0.0020667	6.4041	0.0030534	476.7936471807796	111.43	1.5804	110.33	110	111.58	-1.1038					70	31	3	0	0	0	0.69415	1	8081	8081		44.531	5.7249	1	738660			3201	14704	2402	2412	4467	4467					0.09107018395900468
CIRHLQWANN	10	Unmodified	_CIRHLQWANN_					0	0	0			REV__nc|ENSG00000185220|Q6P3X8-2|PGBD2	REV__nc|ENSG00000185220|Q6P3X8-2|PGBD2	MULTI-SECPEP	OvCa9_classI_Rep2	2	417.8755187988281	3	418.876863	1253.60876	-0.82721	-0.0003465	-4.0807	-0.0017093	-4.9079	-0.0020558	419.20950323581184	50.942	0.44421	48.148	47.778	48.222	-2.794					9	8	2	0	0	0	0.027165	1	3318	3318		20.03	0	1	8546.9	+		3202	22487	2403	2413	4468	4468					-0.007900866714408039
CISLPIPLPH	10	Unmodified	_CISLPIPLPH_					0	0	0		ENSG00000103404|ENST00000219689|USP31	ENSG00000103404|ENST00000219689|USP31	ENSG00000103404|ENST00000219689|USP31	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.3114013671875	2	545.309895	1088.60524	0.53816	0.00029346	2.6877	0.0014656	3.2258	0.0017591	545.3112887104521	36.76	1.3955	33.868	33.395	34.791	-2.8925					73	27	5	0	0	0	0.45225	1	1309	1309		60.972	6.1956	1	755870			3203	2315	2404	2414	4469	4469					0.06447850501990615
CITMKNCAR	9	Unmodified	_CITMKNCAR_					0	0	0		nc|ENSG00000112541|A8K010|LINC00473;ENST00000455853.1_1_6:166353685-166401023:-|nuORF	nc|ENSG00000112541|A8K010|LINC00473	nc|ENSG00000112541|A8K010|LINC00473	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.792236328125	2	520.245914	1038.47728	-0.6795	-0.00035351	3.4602	0.0018002	2.7807	0.0014467	520.2475601896095	87.238	0.65057	84.611	84.25	84.901	-2.6269					18	12	2	0	0	0	0.027462	1	7393	7393		30.504	0	1	50850			3204	12102	2405	2415	4470	4470					-0.040423563552394626
CIVTVRSHGL	10	Unmodified	_CIVTVRSHGL_					0	0	0		ITPR1|p.L2547R|1|0.19|ENSG00000150995|chr3:4814501-4814501|T/G|missense_variant	ITPR1|p.L2547R|1|0.19|ENSG00000150995|chr3:4814501-4814501|T/G|missense_variant	ITPR1|p.L2547R|1|0.19|ENSG00000150995|chr3:4814501-4814501|T/G|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	542.798095703125	2	542.800226	1083.5859	0.86019	0.00046691	-4.0419	-0.002194	-3.1817	-0.0017271	542.7978567793076	153.16	2.0687	153.16	152.45	154.52	0					102	45	3	0	0	0	0.6349	1	17968	17968		37.812	3.639	1	105310			3205	14510	2406	2416	4471	4471					0.04744894211080464
CIWLLQTL	8	Unmodified	_CIWLLQTL_					0	0	0		ENSG00000260903|ENST00000562532|XKR7	ENSG00000260903|ENST00000562532|XKR7	ENSG00000260903|ENST00000562532|XKR7	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.2789306640625	2	495.278063	988.541574	0.16402	8.1238E-05	2.1826	0.001081	2.3467	0.0011622	495.2791295816692	83.614	1.0076	80.951	80.632	81.639	-2.6629					55	20	4	0	0	0	0.50674	1	6983	6983		76.847	8.0598	1	401090			3206	9496	2407	2417	4472	4472					0.0468449006488072
CIWPNNSID	9	Unmodified	_CIWPNNSID_					0	0	0			REV__CON__Q2KIF2	REV__CON__Q2KIF2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.30615234375	2	531.239667	1060.46478	-0.77071	-0.00040943	4.473	0.0023763	3.7023	0.0019668	531.2421627416164	59.517	0.24551	56.125	55.953	56.199	-3.392					6	4	2	0	0	0	0.02741	1	3975	3975		71.296	7.0884	1	10067	+	+	3207	16203	2408	2418	4473	4473					-0.06303353222256192
CIYGGVLCGLG	11	Unmodified	_CIYGGVLCGLG_					0	0	0		tr|A0A7D6ZH01|A0A7D6ZH01_9CLOTYitTfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21090PE=4SV=1	tr|A0A7D6ZH01|A0A7D6ZH01_9CLOTYitTfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21090PE=4SV=1	tr|A0A7D6ZH01|A0A7D6ZH01_9CLOTYitTfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21090PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.7891845703125	2	527.756638	1053.49872	-1.4707	-0.00077617	1.8548	0.00097888	0.38409	0.00020271	528.2575744527311	69.879	0.24132	66.398	66.249	66.49	-3.4812					6	4	2	0	0	0	0.025652	1	5235	5235		31.955	18.996	1	12002			3208	35557	2409	2419	4474	4474					-0.02588648054870646
CKAFLWGLS	9	Unmodified	_CKAFLWGLS_					0	0	0			REV__nc|ENSG00000160145|O60229-6|KALRN	REV__nc|ENSG00000160145|O60229-6|KALRN	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.7815246582031	2	512.767863	1023.52117	0.96544	0.00049505	0.13251	6.7945E-05	1.0979	0.00056299	512.7684754411944	154.43	1.4854	154.43	153.69	155.17	0					56	29	4	0	0	0	0.027462	1	18100	18100		21.96	0	1	146330	+		3209	28959	2410	2420	4475	4475					0.010353194050480852
CKAGISRDKV	10	Unmodified	_CKAGISRDKV_					0	0	0		ENSG00000138942|ENST00000326132|RNF185;ENST00000471384.5_1_22:31556275-31593084:+|nuORF	ENSG00000138942|ENST00000326132|RNF185	ENSG00000138942|ENST00000326132|RNF185	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.8624877929688	2	538.797683	1075.58081	2.5528	0.0013754	-1.5271	-0.0008228	1.0256	0.00055261	538.797352131736	134.07	0.29675	132.54	132.34	132.64	-1.5257					8	5	2	0	0	0	0.026956	1	12953	12953		14.137	3.2716	1	6864.5			3210	4739	2411	2421	4476	4476					0.04604590348435522
CKCLALCYFI	10	Unmodified	_CKCLALCYFI_					0	0	0		ENST00000376004.4_1_13:103450938-103451049:-|nuORF	ENST00000376004.4_1_13:103450938-103451049:-|nuORF	ENST00000376004.4_1_13:103450938-103451049:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	587.8141479492188	2	588.784341	1175.55413	-0.97794	-0.0005758	3.9047	0.002299	2.9268	0.0017232	588.786616073845	99.585	1.3323	97.26	96.899	98.231	-2.3253					62	25	4	0	0	0	0.026697	1	8900	8900		45.952	6.6991	1	177950			3211	11063	2412	2422	4477	4477					-0.026625578587754717
CKDAPQTFDL	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))KDAPQTFDL_	C(1)KDAPQTFDL		C(78)KDAPQTFDL		0	1	0			REV__ENSG00000136960|ENST00000075322|ENPP2	REV__ENSG00000136960|ENST00000075322|ENPP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.7762451171875	2	597.776613	1193.53867	-0.016641	-9.9478E-06	0.02343	1.4006E-05	0.0067881	4.0578E-06	597.7765060356784	104.21	1.5637	102.09	101.48	103.05	-2.1192					82	29	4	0	0	0	0.32141	1	9432	9432		78.264	20.034	1	341640	+		3212	19427	2413	2423	4478	4478	215				-0.05035429850613582
CKDAPQTFDL	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))KDAPQTFDL_					0	1	0			REV__ENSG00000136960|ENST00000075322|ENPP2	REV__ENSG00000136960|ENST00000075322|ENPP2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	597.776613	1193.53867	-1.4737	-0.00088096	1.2608	0.00075366	-0.21296	-0.0001273	597.7772101459357	102.73	1.8781	102.04	101.09	102.97	-0.68459	-0.057216	0.0015001	NaN	78.264	92	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142760	+		3213	19427	2413	2423			215				-0.05035429850613582
CKDAPQTFDL	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))KDAPQTFDL_					0	1	0			REV__ENSG00000136960|ENST00000075322|ENPP2	REV__ENSG00000136960|ENST00000075322|ENPP2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	597.776613	1193.53867	1.312	0.00078427	-1.4869	-0.00088885	-0.17495	-0.00010458	597.7756854355956	103.61	1.3636	102.17	101.61	102.97	-1.4347	0.068793	-0.0017849	NaN	78.264	79	25	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	328890	+		3214	19427	2413	2423			215				-0.05035429850613582
CKDAPQTFDL	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))KDAPQTFDL_					0	1	0			REV__ENSG00000136960|ENST00000075322|ENPP2	REV__ENSG00000136960|ENST00000075322|ENPP2	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	597.776613	1193.53867	-0.016641	-9.9478E-06	0.02343	1.4006E-05	0.0067881	4.0578E-06	597.7765060356784	104.21	1.5637	102.09	101.48	103.05	-2.1192	-0.011577	2.0794E-05	NaN	78.264	82	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	341640	+		3215	19427	2413	2423			215				-0.05035429850613582
CKDKTVIIVA	10	Unmodified	_CKDKTVIIVA_					0	0	0		tr|A0A7D7A1Y3|A0A7D7A1Y3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14310PE=4SV=1	tr|A0A7D7A1Y3|A0A7D7A1Y3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14310PE=4SV=1	tr|A0A7D7A1Y3|A0A7D7A1Y3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14310PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3169555664062	2	545.32046	1088.62637	-2.8527	-0.0015556	-4.0579	-0.0022129	-6.9106	-0.0037685	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.79213	1	11864	11864		19.997	0.89325	1	337600			3216	36052	2414	2424	4479	4479					0.08559815810804139
CKDLIFDLGDP	11	Unmodified	_CKDLIFDLGDP_					0	0	0		nc|ENSG00000159625|Q8IY82-2|DRC7;ENSG00000159625|ENST00000360716|DRC7	nc|ENSG00000159625|Q8IY82-2|DRC7	nc|ENSG00000159625|Q8IY82-2|DRC7	MULTI-SECPEP	OvCa9_classI_Rep3	3	617.3466186523438	2	618.302464	1234.59037	1.519	0.00093921	2.4149	0.0014931	3.9339	0.0024323	618.303951699321	106.87	0.82658	105.6	105.37	106.2	-1.267					22	16	2	0	0	0	0.025457	1	7573	7573		22.58	2.5829	1	94279			3217	6021	2415	2425	4480	4480					-0.017536861566895823
CKGRLMAKV	9	Unmodified	_CKGRLMAKV_					0	0	0			REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|136|3|sense	REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|136|3|sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	502.3000183105469	2	503.28844	1004.56233	-0.84496	-0.00042526	3.6646	0.0018443	2.8196	0.0014191	503.29016757041467	115.69	0.73993	114.65	114.4	115.14	-1.0414					31	14	3	0	0	0	0.027462	1	8586	8586		34.173	0	1	47802	+		3218	28464	2416	2426	4481	4481					0.0602275717288876
CKGRLMAKV	9	Unmodified	_CKGRLMAKV_					0	0	0			REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|136|3|sense	REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|136|3|sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	503.28844	1004.56233	-0.72943	-0.00036711	3.371	0.0016966	2.6415	0.0013295	503.28994789768757	114.69	0.74038	114.58	114.35	115.1	-0.11777	-0.038906	3.3822E-05	NaN	26.693	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45770	+		3219	28464	2416	2426							0.0602275717288876
CKIGTNTADKV	11	Unmodified	_CKIGTNTADKV_					0	0	0			REV__nc|ENSG00000111142|P50579-3|METAP2	REV__nc|ENSG00000111142|P50579-3|METAP2	MULTI-MSMS	OvCa9_classI_Rep3	3	575.299072265625	2	575.300255	1148.58596	-0.91231	-0.00052485	-2.4275	-0.0013965	-3.3398	-0.0019214	575.2987938975226	98.512	0.72591	96.752	96.417	97.143	-1.7595					43	13	4	0	0	0	0.50761	1	6612	6612		53.089	1.8963	1	1521200	+		3220	18018	2417	2427	4482	4482					0.017608494203841474
CKIYKQGI	8	Unmodified	_CKIYKQGI_					0	0	0		ENST00000498735.1_1_1:70771606-70781164:-|nuORF;ENST00000490846.5_1_1:70758067-70779428:-|nuORF;nc|ENSG00000118454|Q8N6S4-2|ANKRD13C;ENSG00000118454|ENST00000370944|ANKRD13C	ENST00000498735.1_1_1:70771606-70781164:-|nuORF	ENST00000498735.1_1_1:70771606-70781164:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.3210754394531	2	476.767863	951.521173	1.2508	0.00059636	-2.9099	-0.0013873	-1.659	-0.00079098	476.76646328812194	110.14	0.57893	108.53	108.23	108.81	-1.6011					14	10	2	0	0	0	0.028476	1	10142	10142		44.531	15.382	1	17976			3221	3306	2418	2428	4483	4483					0.043473194050761776
CKKGDTEFEH	10	Unmodified	_CKKGDTEFEH_					0	0	0			REV__ENSG00000109943|ENST00000227348|CRTAM	REV__ENSG00000109943|ENST00000227348|CRTAM	MULTI-MSMS	OvCa9_classI_Rep3	3	597.2613525390625	2	597.266413	1192.51827	-5.7021	-0.0034057	0.23481	0.00014024	-5.4673	-0.0032654	597.2662753283457	159.85	2.2734	158.52	158.16	160.43	-1.3316					91	44	4	0	0	0	0.65434	1	13849	13849		35.618	0.46626	1	88670	+		3222	17960	2419	2429	4484	4484					-0.07028600510420802
CKQLRQLL	8	Unmodified	_CKQLRQLL_					0	0	0			REV__ENST00000349736.9_1_20:464053-464200:-|nuORF	REV__ENST00000349736.9_1_20:464053-464200:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.2984619140625	2	501.299862	1000.58517	-0.74059	-0.00037126	-4.2948	-0.002153	-5.0354	-0.0025242	501.29758752104317	121.49	1.58	120.14	119.79	121.37	-1.3479					96	30	5	0	0	0	0.66704	1	11517	11517		50.025	5.9077	1	552180	+		3223	24716	2420	2430	4485	4485					0.08490099562004616
CKRTCTVATW	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))KRTCTVATW_	C(0.999)KRTC(0.001)TVATW		C(31)KRTC(-31)TVATW		0	1	0			REV__ENST00000329967.10_1_14:105223084-105225970:+|nuORF	REV__ENST00000329967.10_1_14:105223084-105225970:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	613.296142578125	2	613.29445	1224.57435	1.7598	0.0010793	-0.73717	-0.0004521	1.0226	0.00062718	613.2935666025418	138.15	0.71046	138.15	137.93	138.64	0					37	14	4	0	0	0	0.6104	1	16145	16145		40.778	12.697	2	266580	+		3224	24522	2421	2431	4486	4486	294				-0.028956708746136428
CKSGEKKVDA	10	Unmodified	_CKSGEKKVDA_					0	0	0		ENSG00000106665|ENST00000223398|CLIP2;nc|ENSG00000106665|Q9UDT6-2|CLIP2;ENST00000491075.1_1_7:73800852-73803590:+|nuORF	ENSG00000106665|ENST00000223398|CLIP2	ENSG00000106665|ENST00000223398|CLIP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.8091430664062	2	532.773874	1063.53319	0.64118	0.0003416	-2.418	-0.0012883	-1.7769	-0.00094667	532.7724348206168	74.339	0.82141	74.339	74.02	74.841	0					49	20	4	0	0	0	0.026782	1	7354	7354		37.812	0	1	5442100			3225	2569	2422	2432	4487	4487					0.003968913575818078
CKVGAFCPNSL	11	Unmodified	_CKVGAFCPNSL_					0	0	0			REV__nc|ENSG00000137801|P07996-2|THBS1	REV__nc|ENSG00000137801|P07996-2|THBS1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	568.845458984375	2	569.772819	1137.53109	0.45581	0.00025971	-0.02456	-1.3993E-05	0.43125	0.00024571	569.772524411095	122.41	1.0502	121.04	120.65	121.7	-1.3666					41	20	4	0	0	0	0.025594	1	11635	11635		27.047	0	1	40165	+		3226	19477	2423	2433	4488	4488					-0.03217860651875526
CKWVNNCIGH	10	Unmodified	_CKWVNNCIGH_					0	0	0		nc|ENSG00000163958|Q8WVZ1-2|ZDHHC19;nc|ENSG00000163958|Q8WVZ1-3|ZDHHC19;ENSG00000163958|ENST00000296326|ZDHHC19	nc|ENSG00000163958|Q8WVZ1-2|ZDHHC19	nc|ENSG00000163958|Q8WVZ1-2|ZDHHC19	MULTI-SECPEP	OvCa9_classI_Rep3	3	587.294677734375	2	587.268235	1172.52192	-1.6705	-0.00098101	3.793	0.0022275	2.1226	0.0012465	587.270485061613	118.45	0.14938	117.43	117.34	117.49	-1.0271					4	2	2	0	0	0	0.026915	1	8938	8938		35.618	7.5368	1	5069.5			3227	6387	2424	2434	4489	4489					-0.05744209217550633
CLAFIVVLC	9	Unmodified	_CLAFIVVLC_					0	0	0			REV__ENSG00000151617|ENST00000651419|EDNRA	REV__ENSG00000151617|ENST00000651419|EDNRA	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.7640380859375	2	490.769017	979.523481	-3.8369	-0.001883	-2.502	-0.0012279	-6.3389	-0.0031109	490.76737842371836	153.9	0.52286	152.45	152.25	152.77	-1.4516					26	16	2	0	0	0	0.61768	1	15247	15247		29.842	4.3914	1	19214	+		3228	20243	2425	2435	4490	4490					0.03290031818517036
CLALVYAR	8	Unmodified	_CLALVYAR_					0	0	0			REV__ENSG00000154237|ENST00000388948|LRRK1;REV__ENST00000531270.5_1_15:101565016-101589971:+|nuORF	REV__ENSG00000154237|ENST00000388948|LRRK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	453.80572509765625	2	454.754756	907.494958	1.9628	0.00089257	-3.1004	-0.0014099	-1.1376	-0.00051734	454.753179123627	134.9	0.43234	134.9	134.7	135.13	0					16	9	2	0	0	0	0.028476	1	15689	15689		7.6903	0	1	101600	+		3229	20369;27215	2426	2436	4491	4491					0.03751050233574915
CLAPFLLW	8	Unmodified	_CLAPFLLW_					0	0	0			REV__sp|P16833|UL116_HCMVAUncharacterizedproteinUL116OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL116PE=1SV=2	REV__sp|P16833|UL116_HCMVAUncharacterizedproteinUL116OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL116PE=1SV=2	MULTI-SECPEP	OvCa9_classI_Rep2	2	481.2828674316406	2	481.762049	961.509546	-0.75995	-0.00036612	-0.28467	-0.00013714	-1.0446	-0.00050326	481.7618719726102	58.14	1.1012	55.348	54.972	56.074	-2.792					41	21	2	0	0	0	0.028476	1	4174	4174		33.493	6.8001	1	114230	+		3230	29438	2427	2437	4492	4492					0.02725122381730216
CLATRLCN	8	Unmodified	_CLATRLCN_					0	0	0			REV__ENST00000555923.1_1_14:81955203-81955461:-|nuORF	REV__ENST00000555923.1_1_14:81955203-81955461:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	446.24224853515625	2	447.220223	892.425892	0.083274	3.7242E-05	1.1444	0.0005118	1.2277	0.00054904	447.2201233930492	58.616	0.29848	55.224	55.051	55.35	-3.392					8	5	2	0	0	0	0.028476	1	3881	3881		38.806	21.441	1	12085	+		3231	27550	2428	2438	4493	4493					-0.024623570576409293
CLAWAGVLAL	10	Unmodified	_CLAWAGVLAL_					0	0	0		ENST00000221847.5_1_19:4237115-4237265:+|nuORF	ENST00000221847.5_1_19:4237115-4237265:+|nuORF	ENST00000221847.5_1_19:4237115-4237265:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	508.7884826660156	2	508.783513	1015.55247	2.1732	0.0011057	-3.6488	-0.0018565	-1.4756	-0.00075076	508.7815840592822	96.675	0.89388	96.675	96.459	97.353	0					31	20	2	0	0	0	0.22288	1	10598	10598		90.939	7.6518	1	1297800			3232	9694	2429	2439	4494	4494					0.045318924391494875
CLAWAGVLAL	10	Unmodified	_CLAWAGVLAL_					0	0	0		ENST00000221847.5_1_19:4237115-4237265:+|nuORF	ENST00000221847.5_1_19:4237115-4237265:+|nuORF	ENST00000221847.5_1_19:4237115-4237265:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	508.783513	1015.55247	-0.38212	-0.00019442	-3.2945	-0.0016762	-3.6766	-0.0018706	508.78165809061494	97.94	0.83162	97.046	96.775	97.607	-0.89417	0.18556	0.0003065	NaN	90.939	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40891			3233	9694	2429	2439							0.045318924391494875
CLAWLARKL	9	Unmodified	_CLAWLARKL_					0	0	0			REV__ENSG00000110881|ENST00000447966|ASIC1	REV__ENSG00000110881|ENST00000447966|ASIC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3084106445312	2	537.318054	1072.62156	-1.2522	-0.00067284	-3.2754	-0.00176	-4.5277	-0.0024328	537.3168034422838	43.758	0.12832	43.758	43.651	43.78	0					4	2	2	0	0	0	0.027441	1	2908	2908		55.504	16.251	1	25008	+		3234	18006	2430	2440	4495	4495					0.08814976458711499
CLCSASALFSW	11	Unmodified	_CLCSASALFSW_					0	0	0			REV__Harlequin-int_dup204|chr5:139526721-139527362:+|1.653782137732163|0.1073174503437065|3.95|418.0|28|1|anti-sense	REV__Harlequin-int_dup204|chr5:139526721-139527362:+|1.653782137732163|0.1073174503437065|3.95|418.0|28|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	594.2642822265625	2	594.264827	1186.5151	-0.25078	-0.00014903	-0.59968	-0.00035637	-0.85046	-0.0005054	594.2643845141944	99.362	1.3843	97.036	96.743	98.128	-2.3253					73	26	4	0	0	0	0.54764	1	8879	8879		49.442	3.4693	1	541610	+		3235	28166	2431	2441	4496	4496					-0.07069566888776535
CLDLNLVTRVY	11	Unmodified	_CLDLNLVTRVY_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENST00000574547.5_1_17:4442712-4447986:-|nuORF	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.9045715332031	3	436.904196	1307.69076	-0.17307	-7.5616E-05	3.0457	0.0013307	2.8726	0.0012551	436.9054252712985	40.05	1.0813	37.096	36.863	37.945	-2.9541					51	20	3	0	0	0	0.63942	1	1696	1696		41.08	9.4458	1	189340			3236	4133	2432	2442	4497	4497					0.049219708969530984
CLDLNLVTRVY	11	Unmodified	_CLDLNLVTRVY_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENST00000574547.5_1_17:4442712-4447986:-|nuORF	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MATCH	OvCa9_classI_Rep2	2		3	436.904196	1307.69076	0.021732	9.4946E-06	2.5577	0.0011175	2.5795	0.001127	436.9052959667648	39.633	0.59606	36.923	36.706	37.302	-2.7097	-0.086186	-0.00045828	NaN	41.08	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40649			3237	4133	2432	2442							0.049219708969530984
CLDLNRVEI	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))LDLNRVEI_	C(1)LDLNRVEI		C(83)LDLNRVEI		0	1	0			REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.3579652635712427|0.3175433071941228|2.1|429.0|43|2|sense	REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.3579652635712427|0.3175433071941228|2.1|429.0|43|2|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.2971801757812	2	566.294973	1130.57539	0.10051	5.6916E-05	3.7678	0.0021337	3.8683	0.0021906	566.2967524823343	101.11	1.1121	98.846	98.394	99.506	-2.2665					60	22	3	0	0	0	0.16264	1	9056	9056		82.75	7.7072	1	1286000	+		3238	28430	2433	2443	4498	4498	349				0.015328667659787243
CLDVHTTL	8	Unmodified	_CLDVHTTL_					0	0	0		ENST00000265239.10_1_3:197686563-197686835:-|nuORF	ENST00000265239.10_1_3:197686563-197686835:-|nuORF	ENST00000265239.10_1_3:197686563-197686835:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.26739501953125	2	451.226028	900.437503	-0.20379	-9.1956E-05	0.27484	0.00012401	0.071046	3.2058E-05	451.2259433923247	71.355	1.2216	67.899	67.58	68.802	-3.4563					43	24	2	0	0	0	0.028476	1	5536	5536		60.294	36.091	1	199800			3239	9948	2434	2444	4499	4499					-0.016698367626418076
CLEPDGHW	8	Unmodified	_CLEPDGHW_					0	0	0		ENST00000533518.5_3_16:31095113-31102425:-|nuORF;ENSG00000151006|ENST00000280606|PRSS53	ENST00000533518.5_3_16:31095113-31102425:-|nuORF	ENST00000533518.5_3_16:31095113-31102425:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	477.80340576171875	2	478.700177	955.385802	-0.61502	-0.00029441	-1.8906	-0.00090504	-2.5056	-0.0011994	478.6985359287091	86.532	1.0592	84.355	84.131	85.19	-2.1768					50	20	3	0	0	0	0.028476	1	5173	5173		20.482	5.8177	1	230620			3240	5528	2435	2445	4500	4500					-0.0936758045654642
CLEPLLIRV	9	Unmodified	_CLEPLLIRV_					0	0	0			REV__chr10:97430653-97431012|166|124.66|0.41|8.24|+|1|PGAM1,None|1	REV__chr10:97430653-97431012|166|124.66|0.41|8.24|+|1|PGAM1,None|1	MULTI-MSMS	OvCa9_classI_Rep3	3	528.317626953125	2	528.31772	1054.62089	-0.93969	-0.00049646	-2.0134	-0.0010637	-2.9531	-0.0015602	528.3165311420901	102.19	1.3583	100.67	100	101.36	-1.5211					57	25	3	0	0	0	0.22961	1	7026	7026		71.296	4.8664	1	508870	+		3241	15853	2436	2446	4501	4501					0.09576137019007547
CLERTTRKS	9	Unmodified	_CLERTTRKS_					0	0	0			REV__ENST00000355312.7_1_12:110367795-110368041:-|nuORF	REV__ENST00000355312.7_1_12:110367795-110368041:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.7734985351562	2	547.292765	1092.57098	-0.48594	-0.00026595	1.7607	0.00096362	1.2748	0.00069767	547.2930708756586	48.765	0.7827	48.765	48.248	49.031	0					32	17	3	0	0	0	0.027462	1	3540	3540		34.173	18.531	1	570800	+		3242	24744	2437	2447	4502	4502					0.02839402343056463
CLFFYFGWP	9	Unmodified	_CLFFYFGWP_					0	0	0			REV__ENST00000373610.7_1_1:32661766-32662042:+|nuORF	REV__ENST00000373610.7_1_1:32661766-32662042:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	590.2655639648438	2	590.270238	1178.52592	-6.4648	-0.003816	3.8726	0.0022859	-2.5922	-0.0015301	590.272448811586	160.41	2.659	158.8	158.24	160.9	-1.6101					174	63	4	0	0	0	0.61768	1	15967	15967		29.842	1.5873	1	264810	+		3243	25046	2438	2448	4503	4503					-0.056197964521743415
CLFQSNSK	8	Unmodified	_CLFQSNSK_					0	0	0		CON__Q29443;CON__Q0IIK2	CON__Q29443	CON__Q29443	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.5909118652344	2	463.723652	925.432752	0.18022	8.3573E-05	0.016586	7.6911E-06	0.19681	9.1265E-05	463.7235748827901	57.387	0.25748	57.387	57.264	57.522	0					9	5	2	0	0	0	0.028476	1	4825	4825		42.396	30.885	1	194990		+	3244	633	2439	2449	4504	4504					-0.032947209053986626
CLGGAPLSWVG	11	Unmodified	_CLGGAPLSWVG_					0	0	0			REV__ENST00000370384.7_1_6:74019393-74019684:-|nuORF	REV__ENST00000370384.7_1_6:74019393-74019684:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.237060546875	2	530.268227	1058.5219	0.16061	8.5165E-05	2.5799	0.001368	2.7405	0.0014532	530.2689786670021	62.405	0.61173	62.405	62.165	62.777	0					40	14	5	0	0	0	0.025329	1	5605	5605		35.618	12.096	1	1018000	+		3245	24960	2440	2450	4505	4505					-0.005018859458914449
CLGGAPLSWVG	11	Unmodified	_CLGGAPLSWVG_					0	0	0			REV__ENST00000370384.7_1_6:74019393-74019684:-|nuORF	REV__ENST00000370384.7_1_6:74019393-74019684:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	530.268227	1058.5219	-1.5715	-0.00083332	4.96	0.0026301	3.3885	0.0017968	530.270328445696	65.666	0.53412	62.181	61.889	62.423	-3.4854	-0.11223	0.0020174	NaN	14.865	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18123	+		3246	24960	2440	2450							-0.005018859458914449
CLGRAQGLSD	10	Unmodified	_CLGRAQGLSD_					0	0	0		ENSG00000184925|ENST00000371633|LCN12	ENSG00000184925|ENST00000371633|LCN12	ENSG00000184925|ENST00000371633|LCN12	MULTI-SECPEP	OvCa9_classI_Rep3	3	509.308349609375	2	510.250566	1018.48658	0.054974	2.8051E-05	4.4832	0.0022875	4.5381	0.0023156	510.25286716674185	110.13	1.2017	108.99	108.61	109.81	-1.1444					31	22	2	0	0	0	0.026681	1	7976	7976		44.377	12.422	1	35000			3247	8204	2441	2451	4506	4506					-0.02192548473703937
CLGRAQGLSD	10	Unmodified	_CLGRAQGLSD_					0	0	0		ENSG00000184925|ENST00000371633|LCN12	ENSG00000184925|ENST00000371633|LCN12	ENSG00000184925|ENST00000371633|LCN12	MULTI-MATCH	OvCa9_classI_Rep2	2		2	510.250566	1018.48658	0.016278	8.3061E-06	4.8873	0.0024937	4.9036	0.002502	510.25296653324983	109.52	1.1879	109.35	108.57	109.76	-0.17236	0.20725	0.00040538	NaN	44.377	36	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16714			3248	8204	2441	2451							-0.02192548473703937
CLGRSLHL	8	Unmodified	_CLGRSLHL_					0	0	0		L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|161|1|anti-sense	L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|161|1|anti-sense	L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|161|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	449.7531433105469	2	449.750005	897.485456	2.6558	0.0011945	4.0733	0.001832	6.7291	0.0030264	449.7519419910019	44.877	1.6463	42.167	41.802	43.448	-2.7097					74	32	4	0	0	0	0.66704	1	2592	2592		50.025	0	1	318930			3249	14575	2442	2452	4507	4507					0.03261281948061878
CLHRHCGRD	9	Unmodified	_CLHRHCGRD_					0	0	0			REV__CADPS|p.V721D|1|0.09|ENSG00000163618|chr3:62533000-62533000|A/T|missense_variant	REV__CADPS|p.V721D|1|0.09|ENSG00000163618|chr3:62533000-62533000|A/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.8089599609375	2	548.748002	1095.48145	-0.26832	-0.00014724	1.6664	0.00091442	1.398	0.00076717	549.250174015508	62.126	0.59258	62.126	61.826	62.418	0					29	13	3	0	0	0	0.027462	1	5489	5489		27.882	4.8398	1	188990	+		3250	15733	2443	2453	4508	4508					-0.062471308172916906
CLIDKAREA	9	Unmodified	_CLIDKAREA_					0	0	0			REV__ENSG00000181222|ENST00000674977|POLR2A	REV__ENSG00000181222|ENST00000674977|POLR2A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.8014221191406	2	509.771134	1017.52771	-0.1637	-8.3449E-05	-2.6295	-0.0013404	-2.7932	-0.0014239	509.76955332050267	66.863	1.3243	63.372	62.564	63.888	-3.4902					48	26	3	0	0	0	0.027447	1	4844	4844		47.657	12.039	1	183880	+		3251	22222	2444	2454	4509	4509					0.01965212565778529
CLIILFSW	8	Unmodified	_CLIILFSW_					0	0	0			REV__ENSG00000131019|ENST00000367339|ULBP3	REV__ENSG00000131019|ENST00000367339|ULBP3	MSMS	OvCa99_classI_Rep5	1	497.7743225097656	2	497.775157	993.53576	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.558	1	41.558	41.058	42.058	0								0	0	0	0.30129	1	2605	2605		35.201	5.3592	1		+		3252	18992	2445	2455	4510	4510					0.038733915532020546
CLIWLLAFL	9	Unmodified	_CLIWLLAFL_					0	0	0			REV__ENSG00000155957|ENST00000358230|TMBIM4	REV__ENSG00000155957|ENST00000358230|TMBIM4	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.7894897460938	2	546.319731	1090.62491	1.801	0.00098391	2.6648	0.0014559	4.4658	0.0024398	546.3212157879293	128.44	0.61032	128.44	128.18	128.79	0					23	12	2	0	0	0	0.027412	1	14882	14882		72.62	12.216	1	262440	+		3253	20450	2446	2456	4511	4511					0.08322226512746056
CLIWQYLL	8	Unmodified	_CLIWQYLL_					0	0	0			REV__ENST00000544226.5_1_12:9144845-9161593:+|nuORF	REV__ENST00000544226.5_1_12:9144845-9161593:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.25634765625	2	526.285889	1050.55722	1.4316	0.00075341	-0.90809	-0.00047792	0.52346	0.00027549	526.2853804414087	135.7	0.468	135.7	135.31	135.78	0					19	9	3	0	0	0	0.028476	1	15798	15798		46.766	18.512	1	132470	+		3254	19596	2447	2457	4512	4512					0.03396776581917038
CLKFFRKAK	9	Unmodified	_CLKFFRKAK_					0	0	0		PHF20|p.A984Vfs*15|1|0.19|ENSG00000025293|chr20:35947538-35947539|-/TT|frameshift_variant;ENSG00000025293|ENST00000374012|PHF20	PHF20|p.A984Vfs*15|1|0.19|ENSG00000025293|chr20:35947538-35947539|-/TT|frameshift_variant	PHF20|p.A984Vfs*15|1|0.19|ENSG00000025293|chr20:35947538-35947539|-/TT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	571.3178100585938	2	570.839154	1139.66375	0.19192	0.00010955	0.91979	0.00052505	1.1117	0.0006346	570.8394515853937	75.391	1.1585	72.16	71.915	73.074	-3.2308					47	23	3	0	0	0	0.027462	1	6041	6041		30.504	7.4612	1	154240			3255	1046	2448	2458	4513	4513					0.09950951867085678
CLKFFRKAK	9	Unmodified	_CLKFFRKAK_					0	0	0		PHF20|p.A984Vfs*15|1|0.19|ENSG00000025293|chr20:35947538-35947539|-/TT|frameshift_variant;ENSG00000025293|ENST00000374012|PHF20	PHF20|p.A984Vfs*15|1|0.19|ENSG00000025293|chr20:35947538-35947539|-/TT|frameshift_variant	PHF20|p.A984Vfs*15|1|0.19|ENSG00000025293|chr20:35947538-35947539|-/TT|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	570.839154	1139.66375	-1.165	-0.00066504	2.8627	0.0016341	1.6977	0.0009691	570.8406272545344	74.35	1.1445	72.379	72.009	73.154	-1.9711	0.10966	0.00040084	NaN	53.351	47	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126840			3256	1046	2448	2458							0.09950951867085678
CLKKLRRY	8	Unmodified	_CLKKLRRY_					0	0	0			REV__tr|A0A7D6ZV96|A0A7D6ZV96_9CLOTConservedphageC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13265PE=4SV=1	REV__tr|A0A7D6ZV96|A0A7D6ZV96_9CLOTConservedphageC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13265PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3306884765625	2	540.328953	1078.64335	-1.2676	-0.00068491	3.399	0.0018366	2.1314	0.0011516	540.3307152267141	139.22	4.0818	138.16	137	141.08	-1.0595					200	82	3	0	0	0	0.75915	1	11559	11559		20.482	1.1219	1	55828	+		3257	32245	2449	2459	4514	4514					0.10717781207313237
CLKVVSLTI	9	Unmodified	_CLKVVSLTI_					0	0	0		ENST00000439052.5_1_15:59964851-59964902:-|nuORF	ENST00000439052.5_1_15:59964851-59964902:-|nuORF	ENST00000439052.5_1_15:59964851-59964902:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.2979431152344	2	488.298996	974.583439	-1.012	-0.00049416	-2.4192	-0.0011813	-3.4312	-0.0016754	488.29763994024694	124.62	1.6404	123.23	122.82	124.46	-1.3908					82	31	4	0	0	0	0.46356	1	11854	11854		45.972	3.5761	1	255520			3258	11905	2450	2460	4515	4515					0.09513045753396909
CLLESELEAQL	11	Unmodified	_CLLESELEAQL_					0	0	0		ENST00000569474.5_1_16:67573772-67574407:+|nuORF;ENSG00000039523|ENST00000042381|RIPOR1;nc|ENSG00000039523|Q6ZS17|RIPOR1;nc|ENSG00000039523|Q6ZS17-3|RIPOR1;nc|ENSG00000039523|Q6ZS17-4|RIPOR1	ENST00000569474.5_1_16:67573772-67574407:+|nuORF	ENST00000569474.5_1_16:67573772-67574407:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	623.8639526367188	2	624.313029	1246.6115	0.37981	0.00023712	-3.2558	-0.0020326	-2.876	-0.0017955	624.3111490216685	72.372	0.2851	72.372	72.165	72.45	0					9	6	2	0	0	0	0.02557	1	7055	7055		39.253	17.293	1	158370			3259	1105	2451	2461	4516	4516					-0.0019372084784663457
CLLVAGWL	8	Unmodified	_CLLVAGWL_					0	0	0		chr16:81082981-81084463|344|31.99|0.0|21.61|-|2|None,GCSH|1	chr16:81082981-81084463|344|31.99|0.0|21.61|-|2|None,GCSH|1	chr16:81082981-81084463|344|31.99|0.0|21.61|-|2|None,GCSH|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	438.2781982421875	2	437.746399	873.478245	1.0932	0.00047856	2.0616	0.00090245	3.1548	0.001381	437.74720515990725	62.356	1.1764	62.356	62.081	63.257	0					55	28	4	0	0	0	0.028476	1	5582	5582		54.895	3.5591	1	7322200			3260	382	2452	2462	4517	4517					0.036445493476321644
CLLVGRRSHSF	11	Unmodified	_CLLVGRRSHSF_					0	0	0			REV__nc|ENSG00000125485|Q9H8H2-4|DDX31	REV__nc|ENSG00000125485|Q9H8H2-4|DDX31	MULTI-MSMS	OvCa9_classI_Rep2	2	425.56317138671875	3	425.564396	1273.67136	-0.49907	-0.00021239	-2.3948	-0.0010191	-2.8939	-0.0012315	425.5633997861795	69.334	3.5142	66.713	66.068	69.582	-2.6203					206	68	5	0	0	0	0.69424	1	5507	5507		31.634	1.3165	1	1667000	+		3261	18728	2453	2463	4518	4518					0.045470593967138484
CLLVGRRSHSF	11	Unmodified	_CLLVGRRSHSF_					0	0	0			REV__nc|ENSG00000125485|Q9H8H2-4|DDX31	REV__nc|ENSG00000125485|Q9H8H2-4|DDX31	MULTI-MSMS	OvCa9_classI_Rep3	3	425.5632629394531	3	425.564396	1273.67136	1.0852	0.00046181	-3.9579	-0.0016844	-2.8728	-0.0012226	425.56271987767565	69.963	3.6895	67.243	66.706	70.396	-2.7196					254	73	5	0	0	0	0.62561	1	3248	3248		42.338	1.258	1	1255000	+		3262	18728	2453	2463	4519	4519					0.045470593967138484
CLLVGRRSHSF	11	Unmodified	_CLLVGRRSHSF_					0	0	0			REV__nc|ENSG00000125485|Q9H8H2-4|DDX31	REV__nc|ENSG00000125485|Q9H8H2-4|DDX31	MULTI-MSMS	OvCa9_classI_Rep4_	4	425.56427001953125	3	425.564396	1273.67136	-0.64889	-0.00027614	-2.2713	-0.00096657	-2.9201	-0.0012427	425.5634355212521	71.059	2.9087	67.603	67.251	70.16	-3.4563					178	59	6	0	0	0	0.59615	1	5451	5451		45.022	8.7046	1	1431800	+		3263	18728	2453	2463	4520	4520					0.045470593967138484
CLLVRGRQG	9	Unmodified	_CLLVRGRQG_					0	0	0			REV__ENSG00000174498|ENST00000327987|IGDCC3	REV__ENSG00000174498|ENST00000327987|IGDCC3	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.2905578613281	2	501.287285	1000.56002	1.9923	0.0009987	4.2464	0.0021287	6.2387	0.0031274	501.28921225940996	136.36	2.694	134.82	133.46	136.15	-1.5437					126	54	3	0	0	0	0.67509	1	13173	13173		23.042	1.0826	1	86011	+		3264	21837	2454	2464	4521	4521					0.059760447594499055
CLLVTKKKG	9	Unmodified	_CLLVTKKKG_					0	0	0		tr|A0A7D6ZHD0|A0A7D6ZHD0_9CLOTGalactitol-1-phosphate5-dehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02430PE=3SV=1	tr|A0A7D6ZHD0|A0A7D6ZHD0_9CLOTGalactitol-1-phosphate5-dehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02430PE=3SV=1	tr|A0A7D6ZHD0|A0A7D6ZHD0_9CLOTGalactitol-1-phosphate5-dehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02430PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.2989196777344	2	495.312438	988.610322	2.3981	0.0011878	3.2907	0.0016299	5.6888	0.0028177	495.3142263200985	86.77	0.54095	86.77	86.431	86.972	0					13	12	2	0	0	0	0.027441	1	9166	9166		58.782	28.278	1	200120			3265	35571	2455	2465	4522	4522					0.11556154364575377
CLLWVATAL	9	Unmodified	_CLLWVATAL_					0	0	0			REV__ENSG00000256574|ENST00000553795|OR13A1	REV__ENSG00000256574|ENST00000553795|OR13A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.2795104980469	2	495.278063	988.541574	0.16402	8.1238E-05	2.1826	0.001081	2.3467	0.0011622	495.2791295816692	83.614	1.0076	80.951	80.632	81.639	-2.6629					55	20	4	0	0	0	0.47884	1	6971	6971		44.531	3.9584	1	401090	+		3266	23537	2456	2466	4523	4523					0.046844900648579824
CLPFKHKLEI	10	Unmodified	_CLPFKHKLEI_					0	0	0		ENSG00000166797|ENST00000300030|CIAO2A	ENSG00000166797|ENST00000300030|CIAO2A	ENSG00000166797|ENST00000300030|CIAO2A	MULTI-SECPEP	OvCa9_classI_Rep2	2	409.88006591796875	3	409.902126	1226.68455	-0.15139	-6.2054E-05	3.3932	0.0013909	3.2418	0.0013288	409.9035006661581	52.83	0.73846	50.016	49.542	50.28	-2.8139					26	14	2	0	0	0	0.027233	1	3487	3487		20.837	5.504	1	28652			3267	6713	2457	2467	4524	4524					0.08027497456123456
CLPFKHKLEI	10	Unmodified	_CLPFKHKLEI_					0	0	0		ENSG00000166797|ENST00000300030|CIAO2A	ENSG00000166797|ENST00000300030|CIAO2A	ENSG00000166797|ENST00000300030|CIAO2A	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	409.902126	1226.68455	0.10862	4.4525E-05	3.4981	0.0014339	3.6067	0.0014784	409.9031869316061	53.248	1.1593	50.04	49.602	50.762	-3.208	0.011952	9.3594E-05	NaN	15.333	40	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36984			3268	6713	2457	2467							0.08027497456123456
CLPKQVQMA	9	Unmodified	_CLPKQVQMA_					0	0	0		ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	ENSG00000137947|ENST00000370500|GTF2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.2662353515625	2	509.26463	1016.51471	-0.59641	-0.00030373	-0.27218	-0.00013861	-0.86859	-0.00044234	509.7665767889978	28.814	0.24914	28.814	28.688	28.937	0					7	4	2	0	0	0	0.027462	1	979	979		23.042	0	1	66506			3269	4637	2458	2468	4525	4525					0.0071105818203704985
CLPYIIIAK	9	Unmodified	_CLPYIIIAK_					0	0	0			REV__ENSG00000103148|ENST00000611875|NPRL3	REV__ENSG00000103148|ENST00000611875|NPRL3	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3110961914062	2	517.309364	1032.60417	0.010128	5.2392E-06	3.495	0.001808	3.5051	0.0018132	517.3110169376656	31.938	1.2365	29.228	28.986	30.222	-2.7097					60	24	4	0	0	0	0.58665	1	1023	1023		33.516	0.70317	1	305470	+		3270	17597	2459	2469	4526	4526					0.08917636133060114
CLQGDATIPQ	10	Unmodified	_CLQGDATIPQ_					0	0	0		tr|A0A553SU64|A0A553SU64_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_06425PE=4SV=1	tr|A0A553SU64|A0A553SU64_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_06425PE=4SV=1	tr|A0A553SU64|A0A553SU64_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_06425PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.778564453125	2	523.252774	1044.491	-0.69192	-0.00036205	-1.4392	-0.00075307	-2.1311	-0.0011151	523.2522201249622	76.513	1.1424	73.574	73.175	74.317	-2.9389					39	23	3	0	0	0	0.02663	1	6035	6035		42.864	5.0528	1	242870			3271	34572	2460	2470	4527	4527					-0.029470840507883622
CLQRYIGAL	9	Unmodified	_CLQRYIGAL_					0	0	0		nc|ENSG00000134245|Q93097-2|WNT2B	nc|ENSG00000134245|Q93097-2|WNT2B	nc|ENSG00000134245|Q93097-2|WNT2B	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.8037719726562	2	518.784044	1035.55354	1.9398	0.0010063	4.427	0.0022967	6.3668	0.003303	518.7862357572443	88.33	1.5251	86.962	86.446	87.971	-1.3676					79	30	3	0	0	0	0.027441	1	7752	7752		62.978	17.006	1	325440			3272	15027	2461	2471	4528	4528					0.03718106808082666
CLRPKYMLP	9	Carbamidomethyl (C),Oxidation (M)	_C(Carbamidomethyl (C))LRPKYM(Oxidation (M))LP_	C(1)LRPKYMLP	CLRPKYM(1)LP	C(56)LRPKYMLP	CLRPKYM(56)LP	0	1	1			REV__ENST00000504636.1_1_5:87565403-87565577:+|nuORF	REV__ENST00000504636.1_1_5:87565403-87565577:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	597.8150024414062	2	597.312112	1192.60967	2.0122	0.0012019	1.0944	0.00065372	3.1066	0.0018556	597.312485641673	129.1	1.5455	129.1	128.65	130.2	0					61	32	5	0	0	0	0.36502	1	14964	14964		55.504	16.251	1	225810	+		3273	26861	2462	2472	4529	4529	332	598			0.02106991653249679
CLSILGQPELS	11	Unmodified	_CLSILGQPELS_					0	0	0		ENST00000588939.1_1_18:11906041-11906167:-|nuORF	ENST00000588939.1_1_18:11906041-11906167:-|nuORF	ENST00000588939.1_1_18:11906041-11906167:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	580.304443359375	2	580.305007	1158.59546	-0.37038	-0.00021493	-2.498	-0.0014496	-2.8684	-0.0016645	580.3034348989673	64.544	1.6008	61.058	60.773	62.374	-3.4854					116	32	6	0	0	0	0.23673	1	4605	4605		75.043	0.78827	1	1360800			3274	14081	2463	2473	4530	4530					0.022506177059312904
CLSLIFIIIL	10	Unmodified	_CLSLIFIIIL_					0	0	0		tr|A0A7D6VPZ3|A0A7D6VPZ3_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13455PE=4SV=1	tr|A0A7D6VPZ3|A0A7D6VPZ3_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13455PE=4SV=1	tr|A0A7D6VPZ3|A0A7D6VPZ3_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13455PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	574.8004760742188	2	574.361596	1146.70864	3.1101	0.0017863	-0.020391	-1.1712E-05	3.0897	0.0017746	574.3615940686475	133.48	0.83138	131.95	131.66	132.49	-1.5257					27	16	2	0	0	0	0.026752	1	12841	12841		53.351	8.8204	1	28477			3275	34811	2464	2474	4531	4531					0.14115337889802504
CLSRWSEL	8	Unmodified	_CLSRWSEL_					0	0	0			REV__ENSG00000177283|ENST00000374694|FZD8	REV__ENSG00000177283|ENST00000374694|FZD8	MULTI-MSMS	OvCa99_classI_Rep5	1	497.2474365234375	2	497.244752	992.474951	1.9972	0.00099309	2.5768	0.0012813	4.574	0.0022744	497.24550721807117	85.873	0.77908	85.873	85.334	86.113	0					34	18	3	0	0	0	0.45246	1	9038	9038		82.305	2.3658	1	1290600	+		3276	21994	2465	2475	4532	4532					-0.021587454970244835
CLSRWSEL	8	Unmodified	_CLSRWSEL_					0	0	0			REV__ENSG00000177283|ENST00000374694|FZD8	REV__ENSG00000177283|ENST00000374694|FZD8	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	497.244752	992.474951	1.9972	0.00099309	2.5768	0.0012813	4.574	0.0022744	497.24550721807117	85.873	0.77908	85.873	85.334	86.113	0	0	0	NaN	82.305	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1290600	+		3277	21994	2465	2475							-0.021587454970244835
CLSVGTWESLL	11	Unmodified	_CLSVGTWESLL_					0	0	0			REV__ENST00000534922.5_1_12:133201238-133201883:-|nuORF	REV__ENST00000534922.5_1_12:133201238-133201883:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	604.8300170898438	2	604.305007	1206.59546	-0.98813	-0.00059713	-2.1256	-0.0012845	-3.1138	-0.0018817	604.3036164653826	77.026	1.0405	75.236	74.53	75.571	-1.7894					29	19	2	0	0	0	0.025806	1	6425	6425		24.519	0	1	18776	+		3278	27276	2466	2476	4533	4533					0.00042617705935299455
CLTAIQQALVE	11	Unmodified	_CLTAIQQALVE_					0	0	0			REV__nc|ENSG00000076944|Q15833-2|STXBP2	REV__nc|ENSG00000076944|Q15833-2|STXBP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.8479614257812	2	594.818281	1187.62201	0.74514	0.00044322	-2.3965	-0.0014255	-1.6513	-0.00098225	595.319153586734	160.16	0.59717	160.16	159.81	160.4	0					14	11	2	0	0	0	0.025344	1	18740	18740		20.837	0	1	51810	+		3279	17000	2467	2477	4534	4534					0.03570306597248418
CLTFVGWLL	9	Unmodified	_CLTFVGWLL_					0	0	0			REV__tr|A0A553SMI7|A0A553SMI7_NIACIDUF624domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22555PE=4SV=1	REV__tr|A0A553SMI7|A0A553SMI7_NIACIDUF624domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22555PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	526.2875366210938	2	526.285889	1050.55722	0.83101	0.00043735	1.4062	0.00074006	2.2372	0.0011774	526.2865952254014	112.77	1.4545	111.69	111.37	112.82	-1.0753					45	28	2	0	0	0	0.42057	1	8264	8264		50.025	2.1089	1	167840	+		3280	30334	2468	2478	4535	4535					0.03396776581917038
CLTRAELMEH	10	Unmodified	_CLTRAELMEH_					0	0	0		nc|ENSG00000229086|A6NM66|LINC01548	nc|ENSG00000229086|A6NM66|LINC01548	nc|ENSG00000229086|A6NM66|LINC01548	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.54913330078125	3	401.526731	1201.55836	1.4135	0.00056754	2.3729	0.00095276	3.7863	0.0015203	401.86277396672864	46.726	0.26371	46.726	46.631	46.894	0					8	5	2	0	0	0	0.026734	1	3317	3317		36.318	17.351	1	25957			3281	15327	2469	2479	4536	4536					-0.034353771114865594
CLTTRRSSPA	10	Unmodified	_CLTTRRSSPA_					0	0	0			REV__ENSG00000087586|ENST00000395915|AURKA	REV__ENSG00000087586|ENST00000395915|AURKA	MULTI-SECPEP	OvCa9_classI_Rep2	2	545.3141479492188	2	546.28494	1090.55533	-0.83232	-0.00045468	2.4222	0.0013232	1.5899	0.00086855	546.2861360735654	138.16	1.5162	137.94	137.39	138.91	-0.22696					46	30	2	0	0	0	0.027198	1	13728	13728		26.693	4.733	1	20585	+		3282	16024	2470	2480	4537	4537					0.013671158260194716
CLVFNAWIHKL	11	Unmodified	_CLVFNAWIHKL_					0	0	0		ENST00000367455.8_1_1:192985286-192985367:-|nuORF	ENST00000367455.8_1_1:192985286-192985367:-|nuORF	ENST00000367455.8_1_1:192985286-192985367:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	448.74603271484375	3	448.581276	1342.722	0.14975	6.7174E-05	-1.4506	-0.00065073	-1.3009	-0.00058356	448.5803189890322	33.592	0.39385	33.592	33.335	33.728	0					10	7	2	0	0	0	0.025656	1	1531	1531		26.063	14.967	1	24450			3283	10845	2471	2481	4538	4538					0.06434588721708678
CLVGEFVSDV	10	Unmodified	_CLVGEFVSDV_					0	0	0		nc|ENSG00000084234|Q06481-4|APLP2;nc|ENSG00000084234|Q06481-2|APLP2;ENSG00000084234|ENST00000338167|APLP2;nc|ENSG00000084234|Q06481-6|APLP2;nc|ENSG00000084234|Q06481|APLP2	nc|ENSG00000084234|Q06481-4|APLP2	nc|ENSG00000084234|Q06481-4|APLP2	MULTI-MSMS	OvCa99_classI_Rep5	1	534.2605590820312	2	534.257525	1066.5005	1.7211	0.00091952	3.2819	0.0017534	5.003	0.0026729	534.2591942848518	107.12	2.0425	107.12	106.67	108.71	0					89	47	3	0	0	0	0.31157	1	12076	12076		79.451	5.4763	1	12038000			3284	1713	2472	2482	4539	4539					-0.030093157652800073
CLWCNNALSP	10	Unmodified	_CLWCNNALSP_					0	0	0			REV__nc|ENSG997|Q9N2J8|HERV-H-ENH3	REV__nc|ENSG997|Q9N2J8|HERV-H-ENH3	MULTI-SECPEP	OvCa9_classI_Rep2	2	560.7899169921875	2	560.749344	1119.48414	-0.11009	-6.1733E-05	1.6338	0.00091614	1.5237	0.00085441	560.7500718856344	64.192	0.25958	61.467	61.286	61.545	-2.7245					6	4	2	0	0	0	0.026639	1	4894	4894		63.306	24.553	1	10234	+		3285	29236	2473	2483	4540	4540					-0.07082720203015924
CMDAEFCIL	9	Unmodified	_CMDAEFCIL_					0	0	0			REV__ENST00000254101.3_1_1:146630991-146631057:-|nuORF	REV__ENST00000254101.3_1_1:146630991-146631057:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	522.3027954101562	2	522.713581	1043.41261	1.0681	0.0005583	-1.3593	-0.00071054	-0.29126	-0.00015224	522.712760251095	126.84	1.8088	125.77	125.34	127.14	-1.0715					43	34	2	0	0	0	0.027462	1	10033	10033		31.955	6.5047	1	12623	+		3286	23876	2474	2484	4541	4541					-0.10735975951888577
CMIPGNEDKI	10	Unmodified	_CMIPGNEDKI_					0	0	0		ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	MULTI-MSMS	OvCa99_classI_Rep5	1	560.2655029296875	2	560.262284	1118.51002	1.6235	0.00090958	4.0795	0.0022856	5.703	0.0031952	560.264521520652	142.84	2.0644	142.84	142.44	144.5	0					90	41	3	0	0	0	0.42962	1	16743	16743		64.207	18.235	1	3077300			3287	4764	2475	2485	4542	4542					-0.044498707513866975
CMKVFAQYI	9	Unmodified	_CMKVFAQYI_					0	0	0		sp|P13202|VIE1_HCMVAImmediateearlyproteinIE1OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL123PE=1SV=1;sp|F5HCM1|VIE1_HCMVMImmediateearlyproteinIE1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL123PE=3SV=1	sp|P13202|VIE1_HCMVAImmediateearlyproteinIE1OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL123PE=1SV=1	sp|P13202|VIE1_HCMVAImmediateearlyproteinIE1OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL123PE=1SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.2833862304688	2	551.774831	1101.53511	-0.18269	-0.0001008	-3.9991	-0.0022066	-4.1818	-0.0023074	551.772584514934	69.125	0.48964	69.125	68.9	69.39	0					24	11	3	0	0	0	0.027462	1	6548	6548		38.806	2.3594	1	1510700			3288	32857	2476	2486	4543	4543					-0.01159771158154399
CMVAMRIGFL	10	Unmodified	_CMVAMRIGFL_					0	0	0			REV__ENST00000529480.1_1_11:57457792-57467500:+|nuORF	REV__ENST00000529480.1_1_11:57457792-57467500:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	570.7921752929688	2	570.789958	1139.56536	0.83484	0.00047652	-0.050604	-2.8884E-05	0.78423	0.00044763	570.7894628952289	151.15	0.80769	151.15	150.84	151.65	0					41	15	4	0	0	0	0.64063	1	17734	17734		37.159	2.9866	1	254530	+		3289	27192	2477	2487	4544	4544					0.0011626423538473318
CNDDTGIAG	9	Unmodified	_CNDDTGIAG_					0	0	0			REV__ARMC8|p.R270G|1|0.12|ENSG00000114098|chr3:138239499-138239499|C/G|missense_variant	REV__ARMC8|p.R270G|1|0.12|ENSG00000114098|chr3:138239499-138239499|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1717834472656	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.62352	1	1530	1530		29.15	0.89528	1	60065	+		3290	15662	2478	2488	4545	4545					-0.10924467452787212
CNDQLEGS	8	Unmodified	_CNDQLEGS_					0	0	0			REV__nc|ENSG00000168769|Q6N021-2|TET2	REV__nc|ENSG00000168769|Q6N021-2|TET2	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1717529296875	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.64026	2	1839	1283;1839		55.504	13.03	1	60065	+		3291	21400	2479	2489	4546;4547	4547					-0.10924467452764475
CNEETVGN	8	Unmodified	_CNEETVGN_					0	0	0			REV__nc|ENSG00000162601|Q5VVJ2-3|MYSM1	REV__nc|ENSG00000162601|Q5VVJ2-3|MYSM1	MULTI-MSMS	OvCa9_classI_Rep3	3	433.17181396484375	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.73205	1	1482	1482		35.618	2.1027	1	60065	+		3292	20752	2480	2490	4548	4548					-0.10924467452775843
CNHPNLFD	8	Unmodified	_CNHPNLFD_					0	0	0		SRCAP|p.L2600Afs*30|1|0.06|ENSG00000080603|chr16:30737837-30737838|-/G|frameshift_variant;nc|ENSG00000080603|Q6ZRS2-3|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;ENSG00000080603|ENST00000262518|SRCAP	SRCAP|p.L2600Afs*30|1|0.06|ENSG00000080603|chr16:30737837-30737838|-/G|frameshift_variant	SRCAP|p.L2600Afs*30|1|0.06|ENSG00000080603|chr16:30737837-30737838|-/G|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.21697998046875	2	480.205627	958.396701	-0.37373	-0.00017947	3.0242	0.0014523	2.6505	0.0012728	480.20696727861497	35.269	0.51419	35.269	35.052	35.566	0					21	10	3	0	0	0	0.028476	1	1765	1765		37.159	12.956	1	195480			3293	1638	2481	2491	4549	4549					-0.08416178082268289
CNLSKEDLL	9	Unmodified	_CNLSKEDLL_					0	0	0		ENST00000554446.5_1_14:23416818-23424363:-|nuORF;ENST00000554349.5_1_14:23417204-23426210:-|nuORF;ENST00000554651.5_1_14:23417204-23426210:-|nuORF;nc|ENSG00000092036|Q9H6D7-2|HAUS4;ENST00000554373.5_1_14:23417204-23426142:-|nuORF;nc|ENSG00000092036|Q9H6D7-4|HAUS4;HAUS4|p.E332Qfs*11|1|0.05|ENSG00000092036|chr14:22946624-22946625|-/TGAGAAATTGG|frameshift_variant;ENSG00000092036|ENST00000541587|HAUS4	ENST00000554446.5_1_14:23416818-23424363:-|nuORF	ENST00000554446.5_1_14:23416818-23424363:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.7621459960938	2	517.762975	1033.5114	-1.6957	-0.00087795	1.4447	0.00074802	-0.25095	-0.00012993	517.7633964064247	146.71	1.1132	145.28	144.91	146.02	-1.4357					49	21	3	0	0	0	0.50149	1	14411	14411		42.396	1.618	1	143400			3294	1882	2482	2492	4550	4550					-0.004019133909878292
CNLTQSSQEL	10	Unmodified	_CNLTQSSQEL_					0	0	0			REV__ENST00000372600.8_1_9:131679364-131679535:+|nuORF	REV__ENST00000372600.8_1_9:131679364-131679535:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	561.7579345703125	2	561.75842	1121.50229	1.0872	0.00061075	-1.0061	-0.00056519	0.081089	4.5553E-05	561.757717613742	63.682	3.3714	60.689	60	63.371	-2.9933					120	66	3	0	0	0	0.65849	1	2442	2442		35.152	1.2304	1	89773	+		3295	25006	2483	2493	4551	4551					-0.05360306747297727
CNMITTPIAKL	11	Unmodified	_CNMITTPIAKL_					0	0	0			REV__PHLPP1|p.Q1514Hfs*26|1|0.18|ENSG00000081913|chr18:62978815-62978816|-/ACAT|frameshift_variant	REV__PHLPP1|p.Q1514Hfs*26|1|0.18|ENSG00000081913|chr18:62978815-62978816|-/ACAT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	402.21923828125	3	402.219127	1203.63555	0.63051	0.0002536	0.073763	2.9669E-05	0.70427	0.00028327	402.219087303316	68.613	1.5415	65.993	65.671	67.213	-2.6203					93	30	5	0	0	0	0.6112	1	5423	5423		43.651	1.3127	1	637410	+		3296	17078	2484	2494	4552	4552					0.041878411048401176
CNQVECHPY	9	2 Carbamidomethyl (C)	_C(Carbamidomethyl (C))NQVEC(Carbamidomethyl (C))HPY_	C(1)NQVEC(1)HPY		C(46)NQVEC(46)HPY		0	2	0		ENSG00000196139|ENST00000380554|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;nc|ENSG00000196139|P42330-2|AKR1C3;ENST00000477661.1_1_10:5010485-5019931:+|nuORF;ENST00000460124.5_1_10:5032190-5041484:-|nuORF;ENSG00000198610|ENST00000263126|AKR1C4;ENSG00000264006|ENST00000648824|AKR1C8	ENSG00000196139|ENST00000380554|AKR1C3;ENSG00000264006|ENST00000648824|AKR1C8	ENSG00000264006|ENST00000648824|AKR1C8	MULTI-MSMS	OvCa99_classI_Rep5	1	603.7359008789062	2	603.736965	1205.45938	1.0014	0.0006046	-4.3826	-0.002646	-3.3812	-0.0020414	603.7341154142111	140.02	1.882	140.02	139.7	141.59	0					82	38	3	0	0	0	0.46377	1	16362	16362		45.952	8.1404	1	507120			3297	9516;5570	2485	2495	4553	4553	51;52				-0.13513400076362814
CNTMLLHVD	9	Unmodified	_CNTMLLHVD_					0	0	0			REV__AP1G1|p.N739Kfs*28|1|0.05|ENSG00000166747|chr16:71738993-71738994|-/C|frameshift_variant	REV__AP1G1|p.N739Kfs*28|1|0.05|ENSG00000166747|chr16:71738993-71738994|-/C|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.32373046875	2	523.243895	1044.47324	0.79706	0.00041706	-3.6113	-0.0018896	-2.8142	-0.0014725	523.242056537931	131.82	1.8646	131.6	131.2	133.07	-0.22697					47	37	2	0	0	0	0.027462	1	12961	12961		23.523	0	1	28842	+		3298	15644	2486	2496	4554	4554					-0.04722122577277332
CNTYSSYAP	9	Unmodified	_CNTYSSYAP_					0	0	0			REV__ZAN|p.S2325Lfs*5|1|0.06|ENSG00000146839|chr7:100786133-100786134|-/G|frameshift_variant	REV__ZAN|p.S2325Lfs*5|1|0.06|ENSG00000146839|chr7:100786133-100786134|-/G|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.2558898925781	2	503.20275	1004.39095	-0.47105	-0.00023703	-0.96548	-0.00048583	-1.4365	-0.00072286	503.2017036581036	48.157	0.21996	48.157	47.984	48.204	0					6	4	2	0	0	0	0.027462	1	3510	3510		27.882	7.8855	1	63567	+		3299	20030	2487	2497	4555	4555					-0.111073213845998
CNWPKWSHR	9	Unmodified	_CNWPKWSHR_					0	0	0			REV__ENST00000373225.7_1_9:130566633-130566799:+|nuORF	REV__ENST00000373225.7_1_9:130566633-130566799:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	405.553466796875	3	405.194303	1212.56108	1.6465	0.00066715	3.4292	0.0013895	5.0757	0.0020566	405.1956625879408	47.526	0.75454	44.418	44.133	44.888	-3.1077					35	14	3	0	0	0	0.027462	1	2606	2606		18.262	0	1	42209	+		3300	25032	2488	2498	4556	4556					-0.036697408716690916
CNWTKEELL	9	Unmodified	_CNWTKEELL_					0	0	0		ENSG00000203791|ENST00000368836|EEF1AKMT2;ENST00000466270.5_1_10:126450870-126477664:-|nuORF	ENSG00000203791|ENST00000368836|EEF1AKMT2	ENSG00000203791|ENST00000368836|EEF1AKMT2	MULTI-SECPEP	OvCa9_classI_Rep3	3	568.311279296875	2	568.276249	1134.53795	-0.54959	-0.00031232	-2.9637	-0.0016842	-3.5133	-0.0019965	568.2743945897569	88.698	0.62991	86.567	86.265	86.895	-2.1309					19	12	2	0	0	0	0.027462	1	5372	5372		21.96	0	1	49486			3301	8933	2489	2499	4557	4557					-0.02394224499653319
CNYFLMLCE	9	Unmodified	_CNYFLMLCE_					0	0	0		CALCRL|p.W229L|1|0.04|ENSG00000064989|chr2:187360693-187360693|C/A|missense_variant	CALCRL|p.W229L|1|0.04|ENSG00000064989|chr2:187360693-187360693|C/A|missense_variant	CALCRL|p.W229L|1|0.04|ENSG00000064989|chr2:187360693-187360693|C/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	568.311279296875	2	568.234681	1134.45481	-0.56529	-0.00032122	1.5937	0.0009056	1.0284	0.00058438	568.235362984539	88.643	1.1749	86.512	86.112	87.287	-2.1309					48	23	3	0	0	0	0.027462	1	5372	5372		16.473	0	1	106630			3302	177	2490	2500	4558	4558					-0.10704000543501024
CPADWVWIV	9	Unmodified	_CPADWVWIV_					0	0	0		nc|ENSG00000089250|P29475-2|NOS1;ENSG00000089250|ENST00000317775|NOS1;nc|ENSG00000089250|P29475-5|NOS1;nc|ENSG00000089250|P29475-3|NOS1	nc|ENSG00000089250|P29475-2|NOS1	nc|ENSG00000089250|P29475-2|NOS1	MULTI-MSMS	OvCa99_classI_Rep5	1	544.7689819335938	2	544.76532	1087.51609	2.0794	0.0011328	2.3172	0.0012624	4.3967	0.0023952	544.7666947936023	137.47	0.43555	137.47	137.3	137.74	0					15	8	2	0	0	0	0.42057	1	16038	16038		50.025	3.2581	1	145210			3303	1818	2491	2501	4559	4559					-0.024169844575681054
CPAGTFQERE	10	Unmodified	_CPAGTFQERE_					0	0	0		ENSG00000146197|ENST00000274938|SCUBE3;nc|ENSG00000146197|Q8IX30-2|SCUBE3	ENSG00000146197|ENST00000274938|SCUBE3	ENSG00000146197|ENST00000274938|SCUBE3	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2887573242188	2	569.253305	1136.49206	-0.65063	-0.00037037	3.255	0.0018529	2.6044	0.0014826	569.2554167765798	53.584	0.55946	53.584	53.214	53.774	0					18	12	2	0	0	0	0.026635	1	4252	4252		66.429	17.828	1	117320			3304	5271	2492	2502	4560	4560					-0.07072869681860539
CPAKKKAPE	9	Unmodified	_CPAKKKAPE_					0	0	0			REV__nc|ENSG00000176273|Q2M3R5-2|SLC35G1	REV__nc|ENSG00000176273|Q2M3R5-2|SLC35G1	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.7825012207031	2	486.27077	970.526987	2.3707	0.0011528	-3.4698	-0.0016873	-1.0991	-0.00053445	486.2689102699808	87.771	0.75611	87.771	87.586	88.342	0					25	17	3	0	0	0	0.027462	1	9341	9341		20.947	0	1	350080	+		3305	29020	2493	2503	4561	4561					0.0405441791673411
CPARKAAVSI	10	Unmodified	_CPARKAAVSI_					0	0	0			REV__ENST00000553648.2_1_14:51428384-51428663:-|nuORF	REV__ENST00000553648.2_1_14:51428384-51428663:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.7503967285156	2	508.289494	1014.56443	1.9446	0.00098844	4.4365	0.002255	6.3812	0.0032435	508.29317267169125	87.214	0.61739	87.214	86.888	87.505	0					19	14	2	0	0	0	0.026734	1	9241	9241		39.253	5.3312	1	211300	+		3306	27516	2494	2504	4562	4562					0.05773509182336056
CPARPPQSPA	10	Unmodified	_CPARPPQSPA_					0	0	0			REV__ENST00000529976.5_1_20:57288690-57289536:+|nuORF	REV__ENST00000529976.5_1_20:57288690-57289536:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	512.2547607421875	2	512.255651	1022.49675	-0.86994	-0.00044563	-3.1739	-0.0016259	-4.0439	-0.0020715	512.2539630058868	86.701	3.116	84.524	83.979	87.095	-2.1768					189	61	5	0	0	0	0.67931	1	5196	5196		32.812	0.85756	1	2198600	+		3307	27197	2495	2505	4563	4563					-0.013599407484548465
CPFPGCGKVF	10	Carbamidomethyl (C)	_CPFPGC(Carbamidomethyl (C))GKVF_	C(0.142)PFPGC(0.858)GKVF		C(-7.8)PFPGC(7.8)GKVF		0	1	0		ENSG00000043355|ENST00000376335|ZIC2;nc|ENSG00000174963|Q8N9L1-2|ZIC4;ENSG00000174963|ENST00000383075|ZIC4;nc|ENSG00000174963|Q8N9L1-5|ZIC4;nc|ENSG00000174963|Q8N9L1-3|ZIC4;ENST00000493664.5_1_3:147108719-147114575:-|nuORF;ENSG00000152977|ENST00000282928|ZIC1;ENSG00000139800|ENST00000267294|ZIC5	ENSG00000043355|ENST00000376335|ZIC2	ENSG00000043355|ENST00000376335|ZIC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	556.2573852539062	2	556.256805	1110.49906	0.83142	0.00046249	-1.5902	-0.00088456	-0.75878	-0.00042207	556.2558166044931	89.394	2.0041	86.791	86.385	88.389	-2.6027					93	39	4	0	0	0	0.43592	1	7690	7690		63.306	6.5852	2	603310			3308	1128	2496	2506	4564	4564	7				-0.05177228335014661
CPFYLFFCL	9	Unmodified	_CPFYLFFCL_					0	0	0		Harlequin-int_dup68|chr1:206053001-206053902:+|8.701031500351274|0.4316687424735471|4.33|427.0|5|1|sense	Harlequin-int_dup68|chr1:206053001-206053902:+|8.701031500351274|0.4316687424735471|4.33|427.0|5|1|sense	Harlequin-int_dup68|chr1:206053001-206053902:+|8.701031500351274|0.4316687424735471|4.33|427.0|5|1|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	576.7671508789062	2	576.766474	1151.5184	1.294	0.00074634	-2.7454	-0.0015835	-1.4514	-0.00083713	576.764710148399	148.77	1.1255	148.77	148.52	149.65	0					47	22	3	0	0	0	0.32242	1	17409	17409		60.404	2.5924	1	355210			3309	14388	2497	2507	4565	4565					-0.051302720440844496
CPGGQYSCYLL	11	Unmodified	_CPGGQYSCYLL_					0	0	0			REV__nc|ENSG00000110881|P78348-3|ASIC1	REV__nc|ENSG00000110881|P78348-3|ASIC1	MULTI-SECPEP	OvCa9_classI_Rep2	2	402.21966552734375	3	401.843948	1202.51002	0.66283	0.00026635	0.41687	0.00016752	1.0797	0.00043387	402.1790710051062	68.713	0.6459	66.093	65.77	66.416	-2.6203					17	12	2	0	0	0	0.025864	1	5410	5410		26.063	8.2302	1	9821.3	+		3310	28794	2498	2508	4566	4566					-0.08313870751385366
CPGPAPLR	8	Unmodified	_CPGPAPLR_					0	0	0		nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	MULTI-MSMS	OvCa99_classI_Rep5	1	405.71893310546875	2	405.718173	809.421793	2.542	0.0010313	0.64154	0.00026028	3.1836	0.0012916	405.71835229560304	119.45	0.89767	119.45	119.19	120.09	0					32	21	2	0	0	0	0.72922	2	13710	13710;13732		37.028	7.1869	1	324970			3311	1258	2499	2509	4567;4568	4567					0.00945921510970038
CPGPAPLR	8	Unmodified	_CPGPAPLR_					0	0	0		nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	405.71856689453125	2	405.718173	809.421793	0.46862	0.00019013	0.9592	0.00038916	1.4278	0.00057929	405.71843883907457	120.34	1.7473	119	118.72	120.47	-1.3444					77	33	4	0	0	0	0.74361	1	11324	11324		29.842	0	1	591240			3312	1258	2499	2509	4569	4569					0.00945921510970038
CPGRERRTE	9	Unmodified	_CPGRERRTE_					0	0	0		TP53|p.D281E|1|0.87|ENSG00000141510|chr17:7673777-7673777|G/C|missense_variant	TP53|p.D281E|1|0.87|ENSG00000141510|chr17:7673777-7673777|G/C|missense_variant	TP53|p.D281E|1|0.87|ENSG00000141510|chr17:7673777-7673777|G/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	552.3036499023438	2	552.272364	1102.53017	-0.77314	-0.00042698	1.1944	0.00065966	0.42131	0.00023268	552.7738656651501	102.81	0.20798	101.28	101.15	101.36	-1.5211					5	3	2	0	0	0	0.027462	1	7079	7079		15.642	0	1	15349			3313	32976	2500	2510	4570	4570					-0.016989389765512897
CPHKVLGLPLG	11	Unmodified	_CPHKVLGLPLG_					0	0	0			REV__ENST00000396355.5_1_16:15818759-15818942:+|nuORF	REV__ENST00000396355.5_1_16:15818759-15818942:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3296508789062	2	567.328619	1132.64269	-0.48412	-0.00027465	2.6482	0.0015024	2.1641	0.0012278	567.3299446868054	145.54	4.8872	144.11	142.68	147.57	-1.4357					247	95	4	0	0	0	0.71929	1	14567	14567		23.042	2.0956	1	208760	+		3314	25330	2501	2511	4571	4571					0.08166941767581193
CPHSFDKYL	9	Unmodified	_CPHSFDKYL_					0	0	0			REV__ENSG00000119431|ENST00000374180|HDHD3	REV__ENSG00000119431|ENST00000374180|HDHD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.3043823242188	2	555.257859	1108.50117	0.20555	0.00011413	-1.0562	-0.00058644	-0.85061	-0.00047231	555.257135968849	31.532	0.44676	31.532	31.41	31.857	0					16	8	3	0	0	0	0.027462	1	1338	1338		39.253	3.6345	1	150920	+		3315	18443	2502	2512	4572	4572					-0.04874476325562682
CPIGMQKLVK	10	Unmodified	_CPIGMQKLVK_					0	0	0			REV__tr|A0A553SN36|A0A553SN36_NIACIUroporphyrinogen-IIIsynthaseOS=NialliacirculansOX=1397GN=CEQ21_23765PE=4SV=1	REV__tr|A0A553SN36|A0A553SN36_NIACIUroporphyrinogen-IIIsynthaseOS=NialliacirculansOX=1397GN=CEQ21_23765PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.352783203125	2	558.81703	1115.61951	-0.10451	-5.84E-05	-2.4307	-0.0013583	-2.5352	-0.0014167	558.8149692739147	95.193	1.2062	92.724	92.46	93.666	-2.4685					39	23	3	0	0	0	0.026697	1	8439	8439		55.504	12.64	1	77391	+		3316	30391	2503	2513	4573	4573					0.06632179658618043
CPIGMQKLVK	10	Unmodified	_CPIGMQKLVK_					0	0	0			REV__tr|A0A553SN36|A0A553SN36_NIACIUroporphyrinogen-IIIsynthaseOS=NialliacirculansOX=1397GN=CEQ21_23765PE=4SV=1	REV__tr|A0A553SN36|A0A553SN36_NIACIUroporphyrinogen-IIIsynthaseOS=NialliacirculansOX=1397GN=CEQ21_23765PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	558.81703	1115.61951	0.28142	0.00015726	-3.5552	-0.0019867	-3.2738	-0.0018294	558.8147087993253	93.853	0.72691	92.754	92.487	93.214	-1.0995	0.032369	-0.001922	NaN	55.504	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39117	+		3317	30391	2503	2513							0.06632179658618043
CPIGMQKLVK	10	Unmodified	_CPIGMQKLVK_					0	0	0			REV__tr|A0A553SN36|A0A553SN36_NIACIUroporphyrinogen-IIIsynthaseOS=NialliacirculansOX=1397GN=CEQ21_23765PE=4SV=1	REV__tr|A0A553SN36|A0A553SN36_NIACIUroporphyrinogen-IIIsynthaseOS=NialliacirculansOX=1397GN=CEQ21_23765PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	558.81703	1115.61951	-0.95089	-0.00053137	-0.57771	-0.00032283	-1.5286	-0.00085421	558.8162368765741	94.582	0.85094	92.687	92.46	93.311	-1.8956	-0.034841	0.0014057	NaN	55.504	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87282	+		3318	30391	2503	2513							0.06632179658618043
CPISWKKI	8	Unmodified	_CPISWKKI_					0	0	0			REV__ENST00000527591.5_1_14:61453838-61514994:+|nuORF	REV__ENST00000527591.5_1_14:61453838-61514994:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.7808532714844	2	487.778231	973.541908	-0.66134	-0.00032259	2.34	0.0011414	1.6787	0.00081882	487.7793241016113	73.463	3.7347	70.067	69.64	73.374	-3.3961					176	77	5	0	0	0	0.56195	1	5751	5751		71.296	1.6681	1	2547300	+		3319	19648	2504	2514	4574	4574					0.05407909784730691
CPITGERVL	9	Unmodified	_CPITGERVL_					0	0	0		ENST00000461965.5_1_2:191775005-191792247:+|nuORF;nc|ENSG00000115419|O94925-3|GLS;ENSG00000115419|ENST00000320717|GLS	ENST00000461965.5_1_2:191775005-191792247:+|nuORF	ENST00000461965.5_1_2:191775005-191792247:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	494.28570556640625	2	494.268227	986.521901	-0.071106	-3.5145E-05	1.1995	0.00059286	1.1284	0.00055772	494.26848289335834	83.604	0.87309	82.005	81.505	82.378	-1.5989					19	17	2	0	0	0	0.027091	1	7187	7187		71.296	32.49	1	19012			3320	3095	2505	2515	4575	4575					0.028101140541139102
CPKKPSYH	8	Unmodified	_CPKKPSYH_					0	0	0		ENSG00000049323|ENST00000404816|LTBP1;nc|ENSG00000049323|Q14766-4|LTBP1;nc|ENSG00000049323|Q14766-3|LTBP1;nc|ENSG00000049323|Q14766-2|LTBP1;nc|ENSG00000049323|Q14766-5|LTBP1	ENSG00000049323|ENST00000404816|LTBP1	ENSG00000049323|ENST00000404816|LTBP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.289794921875	2	480.242012	958.469472	-1.0511	-0.00050476	-4.1102	-0.0019739	-5.1613	-0.0024787	480.23986490105005	43.837	1.1189	40.829	40.326	41.444	-3.0074					28	21	2	0	0	0	0.028476	1	2097	2097		42.474	10.52	1	9876.6			3321	1168	2506	2516	4576	4576					-0.01142424288843813
CPLCLAVLESI	11	2 Carbamidomethyl (C)	_C(Carbamidomethyl (C))PLC(Carbamidomethyl (C))LAVLESI_	C(1)PLC(1)LAVLESI		C(59)PLC(59)LAVLESI		0	2	0			REV__ENST00000315127.8_2_15:74924440-74924632:-|nuORF	REV__ENST00000315127.8_2_15:74924440-74924632:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	637.829345703125	2	637.827792	1273.64103	2.6694	0.0017026	0.64286	0.00041003	3.3122	0.0021126	637.8273132228005	97.968	0.72481	97.968	97.522	98.247	0					57	16	6	0	0	0	0.43234	1	10784	10784		58.782	7.5893	1	1751800	+		3322	24391	2507	2517	4577	4577	290;291				0.015155198966567696
CPLCLAVLESI	11	2 Carbamidomethyl (C)	_C(Carbamidomethyl (C))PLC(Carbamidomethyl (C))LAVLESI_					0	2	0			REV__ENST00000315127.8_2_15:74924440-74924632:-|nuORF	REV__ENST00000315127.8_2_15:74924440-74924632:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	637.827792	1273.64103	2.6694	0.0017026	0.64286	0.00041003	3.3122	0.0021126	637.8273132228005	97.968	0.72481	97.968	97.522	98.247	0	0.13267	0.00064349	NaN	58.782	57	16	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1751800	+		3323	24391	2507	2517			290;291				0.015155198966567696
CPLCLAVLESI	11	2 Carbamidomethyl (C)	_C(Carbamidomethyl (C))PLC(Carbamidomethyl (C))LAVLESI_					0	2	0			REV__ENST00000315127.8_2_15:74924440-74924632:-|nuORF	REV__ENST00000315127.8_2_15:74924440-74924632:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	637.827792	1273.64103	-1.3376	-0.00085314	-0.19994	-0.00012753	-1.5375	-0.00098067	637.827330439403	98.741	0.54839	97.848	97.608	98.156	-0.89306	0.012056	-0.00043163	NaN	58.782	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20223	+		3324	24391	2507	2517			290;291				0.015155198966567696
CPLCLAVLESI	11	2 Carbamidomethyl (C)	_C(Carbamidomethyl (C))PLC(Carbamidomethyl (C))LAVLESI_					0	2	0			REV__ENST00000315127.8_2_15:74924440-74924632:-|nuORF	REV__ENST00000315127.8_2_15:74924440-74924632:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	637.827792	1273.64103	-0.27462	-0.00017516	-0.12024	-7.6693E-05	-0.39486	-0.00025185	637.8269677227345	99.54	0.51964	97.855	97.624	98.144	-1.685	0.01946	-0.00032996	NaN	58.782	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19801	+		3325	24391	2507	2517			290;291				0.015155198966567696
CPLCLAVLESI	11	2 Carbamidomethyl (C)	_C(Carbamidomethyl (C))PLC(Carbamidomethyl (C))LAVLESI_					0	2	0			REV__ENST00000315127.8_2_15:74924440-74924632:-|nuORF	REV__ENST00000315127.8_2_15:74924440-74924632:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	637.827792	1273.64103	-0.76984	-0.00049102	0.020569	1.312E-05	-0.74927	-0.0004779	637.8273780695487	99.997	0.60817	97.671	97.468	98.076	-2.3253	-0.16418	-0.00015034	NaN	58.782	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22490	+		3326	24391	2507	2517			290;291				0.015155198966567696
CPLGKQTWI	9	Unmodified	_CPLGKQTWI_					0	0	0			REV__ENST00000469535.5_1_1:207925423-207925537:+|nuORF	REV__ENST00000469535.5_1_1:207925423-207925537:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.2797241210938	2	523.278595	1044.54264	-0.6886	-0.00036033	1.7059	0.00089266	1.0173	0.00053233	523.2796687506648	76.424	2.9706	73.485	72.741	75.711	-2.9389					194	61	7	0	0	0	0.38529	1	6178	6178		53.351	0.41475	1	14882000	+		3327	26242	2508	2518	4578	4578					0.02214704433777115
CPLKKLNR	8	Unmodified	_CPLKKLNR_					0	0	0		ENST00000425713.1_1_13:19700631-19713554:+|nuORF	ENST00000425713.1_1_13:19700631-19713554:+|nuORF	ENST00000425713.1_1_13:19700631-19713554:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.32183837890625	2	486.294579	970.574605	0.85087	0.00041378	-3.5558	-0.0017292	-2.705	-0.0013154	486.29266163331454	157.42	0.65759	157.42	157.25	157.91	0					17	12	2	0	0	0	0.028476	1	18441	18441		28.254	12.618	1	50802			3328	11724	2509	2519	4579	4579					0.08814116907581138
CPLKRFRARRR	11	Unmodified	_CPLKRFRARRR_					0	0	0		ENST00000237612.7_1_4:89079727-89080063:-|nuORF	ENST00000237612.7_1_4:89079727-89080063:-|nuORF	ENST00000237612.7_1_4:89079727-89080063:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	486.95855712890625	3	486.961484	1457.86262	-7.2825	-0.0035463	2.045	0.00099584	-5.2375	-0.0025504	486.9623381995862	161.08	3.4384	159.71	158.52	161.96	-1.3692					219	70	4	0	0	0	0.72545	1	13973	13973		9.6461	0.43434	1	133400			3329	9744	2510	2520	4580	4580					0.1520060521850155
CPLLPPSLGV	10	Unmodified	_CPLLPPSLGV_					0	0	0			REV__ENST00000343938.8_1_1:1263420-1264233:+|nuORF	REV__ENST00000343938.8_1_1:1263420-1264233:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.25152587890625	2	498.283346	994.552139	0.7781	0.00038772	-2.6685	-0.0013297	-1.8904	-0.00094197	498.281940822065	151.25	0.30695	151.25	151.09	151.4	0					7	5	2	0	0	0	0.026915	1	17715	17715		35.618	16.258	1	15403	+		3330	24675	2511	2521	4581	4581					0.05464472719313562
CPLLRRWLCRR	11	Unmodified	_CPLLRRWLCRR_					0	0	0		ENST00000473905.6_1_1:155023065-155023341:+|nuORF;nc|ENSG00000163357|Q5T197-3|DCST1;ENSG00000163357|ENST00000295542|DCST1	ENST00000473905.6_1_1:155023065-155023341:+|nuORF	ENST00000473905.6_1_1:155023065-155023341:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.27276611328125	3	491.279825	1470.81765	0.83374	0.0004096	-2.5789	-0.0012669	-1.7451	-0.00085734	491.2783166497902	37.889	1.0937	34.997	34.541	35.635	-2.8925					32	21	2	0	0	0	0.026145	1	1471	1471		23.378	14.166	1	17341			3331	6292	2512	2522	4582	4582					0.10107038360933984
CPLLSFLLTL	10	Unmodified	_CPLLSFLLTL_					0	0	0			REV__ENSG00000047597|ENST00000378616|XK	REV__ENSG00000047597|ENST00000378616|XK	MULTI-MSMS	OvCa99_classI_Rep5	1	560.3301391601562	2	560.327753	1118.64095	3.1289	0.0017532	1.655	0.00092737	4.784	0.0026806	560.3285747466892	99.383	1.1877	99.383	98.506	99.694	0					55	28	3	0	0	0	0.52321	1	10975	10975		51.335	1.8939	1	3128800	+		3332	16658	2513	2523	4583	4583					0.08637887958980173
CPLPQEMKAL	10	Unmodified	_CPLPQEMKAL_					0	0	0		SECISBP2|p.M455Hfs*105|1|0.09|ENSG00000187742|chr9:89341399-89341400|-/G|frameshift_variant;nc|ENSG00000187742|Q96T21-2|SECISBP2;nc|ENSG00000187742|Q96T21-3|SECISBP2;ENSG00000187742|ENST00000375807|SECISBP2;SECISBP2|p.V304Ffs*19|1|0.23|ENSG00000187742|chr9:89334551-89334551|G/-|frameshift_variant	SECISBP2|p.M455Hfs*105|1|0.09|ENSG00000187742|chr9:89341399-89341400|-/G|frameshift_variant	SECISBP2|p.M455Hfs*105|1|0.09|ENSG00000187742|chr9:89341399-89341400|-/G|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	565.2905883789062	2	565.290845	1128.56714	-0.19537	-0.00011044	-0.94183	-0.00053241	-1.1372	-0.00064285	565.2900889819576	59.859	0.9399	59.859	59.452	60.392	0					61	23	4	0	0	0	0.3094	1	5185	5185		79.713	2.395	1	5133000			3333	8428	2514	2524	4584	4584					0.007995965249847359
CPLPQEMKAL	10	Unmodified	_CPLPQEMKAL_					0	0	0		SECISBP2|p.M455Hfs*105|1|0.09|ENSG00000187742|chr9:89341399-89341400|-/G|frameshift_variant;nc|ENSG00000187742|Q96T21-2|SECISBP2;nc|ENSG00000187742|Q96T21-3|SECISBP2;ENSG00000187742|ENST00000375807|SECISBP2;SECISBP2|p.V304Ffs*19|1|0.23|ENSG00000187742|chr9:89334551-89334551|G/-|frameshift_variant	SECISBP2|p.M455Hfs*105|1|0.09|ENSG00000187742|chr9:89341399-89341400|-/G|frameshift_variant	SECISBP2|p.M455Hfs*105|1|0.09|ENSG00000187742|chr9:89341399-89341400|-/G|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	565.290845	1128.56714	-1.783	-0.0010079	1.876	0.0010605	0.093023	5.2585E-05	565.2916508845718	62.81	1.5368	60.066	59.152	60.689	-2.7444	0.062449	0.0024781	NaN	79.713	43	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40029			3334	8428	2514	2524							0.007995965249847359
CPLPQEMKAL	10	Unmodified	_CPLPQEMKAL_					0	0	0		SECISBP2|p.M455Hfs*105|1|0.09|ENSG00000187742|chr9:89341399-89341400|-/G|frameshift_variant;nc|ENSG00000187742|Q96T21-2|SECISBP2;nc|ENSG00000187742|Q96T21-3|SECISBP2;ENSG00000187742|ENST00000375807|SECISBP2;SECISBP2|p.V304Ffs*19|1|0.23|ENSG00000187742|chr9:89334551-89334551|G/-|frameshift_variant	SECISBP2|p.M455Hfs*105|1|0.09|ENSG00000187742|chr9:89341399-89341400|-/G|frameshift_variant	SECISBP2|p.M455Hfs*105|1|0.09|ENSG00000187742|chr9:89341399-89341400|-/G|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	565.290845	1128.56714	0.72202	0.00040815	-1.5861	-0.0008966	-0.86406	-0.00048844	565.2897473179096	63.56	1.1591	60.085	59.723	60.882	-3.475	0.081599	-0.0014361	NaN	79.713	37	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111400			3335	8428	2514	2524							0.007995965249847359
CPLYVQILKP	10	Unmodified	_CPLYVQILKP_					0	0	0		nc|ENSG00000107147|Q5JUK3-4|KCNT1;nc|ENSG00000107147|Q5JUK3|KCNT1;ENSG00000107147|ENST00000371757|KCNT1;nc|ENSG00000107147|Q5JUK3-2|KCNT1;CAMSAP1-KCNT1|1|fusion;ENST00000498426.5_1_1:196286396-196434478:-|nuORF;nc|ENSG00000162687|Q6UVM3-4|KCNT2;ENST00000610076.1_1_1:196227273-196577439:-|nuORF;nc|ENSG00000162687|Q6UVM3-3|KCNT2;nc|ENSG00000162687|Q6UVM3-2|KCNT2;ENSG00000162687|ENST00000294725|KCNT2	nc|ENSG00000107147|Q5JUK3-4|KCNT1	nc|ENSG00000107147|Q5JUK3-4|KCNT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.7747192382812	2	587.338652	1172.66275	1.6229	0.0009532	2.5905	0.0015215	4.2134	0.0024747	587.3403419306001	80.806	1.1409	80.806	80.314	81.455	0					51	26	4	0	0	0	0.026915	1	8324	8324		27.882	1.1893	1	1136900			3336	2589	2515	2525	4585	4585					0.08332692707540446
CPPACPLPLL	10	Unmodified	_CPPACPLPLL_					0	0	0		nc|ENSG00000182896|Q3KNT9-2|TMEM95	nc|ENSG00000182896|Q3KNT9-2|TMEM95	nc|ENSG00000182896|Q3KNT9-2|TMEM95	MULTI-MSMS	OvCa99_classI_Rep5	1	512.2737426757812	2	512.271924	1022.52929	1.2042	0.00061687	-1.2109	-0.00062029	-0.006666	-3.4148E-06	512.2711634540926	143.63	2.7616	143.63	141.83	144.6	0					129	55	4	0	0	0	0.65806	1	16674	16674		35.201	1.0282	1	558690			3337	15209	2516	2526	4586	4586					0.01893130330176973
CPPNSWALP	9	Unmodified	_CPPNSWALP_					0	0	0		ENST00000372994.1_1_9:130925924-130926173:+|nuORF	ENST00000372994.1_1_9:130925924-130926173:+|nuORF	ENST00000372994.1_1_9:130925924-130926173:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.2966613769531	2	492.73402	983.453487	0.32984	0.00016252	2.7511	0.0013556	3.081	0.0015181	492.73522511801764	98.072	0.48539	97.179	96.924	97.41	-0.89305					15	9	2	0	0	0	0.027441	1	8869	8869		68.787	4.5796	1	8752.2			3338	10995	2517	2527	4587	4587					-0.038901305257468266
CPPPGCHALSD	11	Unmodified	_CPPPGCHALSD_					0	0	0		ENST00000415758.1_1_7:44608571-44609680:-|nuORF	ENST00000415758.1_1_7:44608571-44609680:-|nuORF	ENST00000415758.1_1_7:44608571-44609680:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.7461547851562	2	548.731151	1095.44775	-1.2145	-0.00066643	0.96977	0.00053214	-0.24473	-0.00013429	548.7318345509069	106.67	0.41852	104.79	104.59	105.01	-1.8785					11	7	2	0	0	0	0.025366	1	9741	9741		53.351	16.905	1	12763			3339	11592	2518	2528	4588	4588					-0.09615597099741535
CPPRTGVL	8	Unmodified	_CPPRTGVL_					0	0	0			REV__nc|ENSG00000144712|O75155-2|CAND2	REV__nc|ENSG00000144712|O75155-2|CAND2	MULTI-SECPEP	OvCa99_classI_Rep5	1	421.2301025390625	2	421.73128	841.448008	-0.46923	-0.00019789	2.1603	0.00091106	1.6911	0.00071318	421.73212597997747	26.117	0.24971	26.117	25.992	26.242	0					6	4	2	0	0	0	0.028476	1	653	653		19.36	0	1	28576	+		3340	19928	2519	2529	4589	4589					0.020941906824532452
CPPSGAASHE	10	Unmodified	_CPPSGAASHE_					0	0	0			REV__ENSG00000164651|ENST00000418710|SP8	REV__ENSG00000164651|ENST00000418710|SP8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.7939453125	2	478.200541	954.38653	-2.1048	-0.0010065	2.9991	0.0014342	0.89424	0.00042763	478.20186572455697	108.16	0.39714	106.4	106.24	106.63	-1.7581					14	7	3	0	0	0	0.026956	1	9888	9888		34.173	0	1	16205	+		3341	21008	2520	2530	4590	4590					-0.0924878580750601
CPPVLLLCFF	10	Unmodified	_CPPVLLLCFF_					0	0	0			REV__nc|ENSG00000182871|P39060|COL18A1	REV__nc|ENSG00000182871|P39060|COL18A1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	576.3441162109375	2	576.303224	1150.5919	-0.75616	-0.00043578	-3.9009	-0.0022481	-4.657	-0.0026839	576.3009501111095	94.379	0.9474	91.911	91.714	92.661	-2.4685					35	18	3	0	0	0	0.026578	1	8292	8292		54.765	6.8491	1	81919	+		3342	29043	2521	2531	4591	4591					0.0226227639834633
CPPWLLMTL	9	Unmodified	_CPPWLLMTL_					0	0	0			REV__ENST00000404404.5_1_7:5036913-5037096:+|nuORF	REV__ENST00000404404.5_1_7:5036913-5037096:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.8106689453125	2	537.279749	1072.54494	-0.076249	-4.0967E-05	3.5154	0.0018888	3.4392	0.0018478	537.2813140852812	67.254	0.84149	63.764	63.442	64.284	-3.4902					25	16	2	0	0	0	0.027462	1	4918	4918		24.203	0	1	90800	+		3343	25434	2522	2532	4592	4592					0.01157416847240711
CPRLWVLV	8	Unmodified	_CPRLWVLV_					0	0	0		ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.8214416503906	2	493.286223	984.557893	-0.38359	-0.00018922	2.3617	0.001165	1.9781	0.00097579	493.2877111222855	68.713	0.54738	66.093	66.018	66.565	-2.6203					11	10	2	0	0	0	0.028476	1	5431	5431		26.796	7.4361	1	12487			3344	8861	2523	2533	4593	4593					0.0649961602160829
CPRPGPPL	8	Unmodified	_CPRPGPPL_					0	0	0			REV__ENST00000607453.1_1_1:245133290-245134376:-|nuORF	REV__ENST00000607453.1_1_1:245133290-245134376:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	418.927978515625	2	418.725998	835.437443	-0.675	-0.00028264	2.6337	0.0011028	1.9587	0.00082016	418.7267877096195	102.36	0.39584	101.68	101.34	101.74	-0.68459					10	7	2	0	0	0	0.028476	1	9378	9378		15.636	6.1657	1	10886	+		3345	28086	2524	2534	4594	4594					0.013142080280204027
CPRPPPPA	8	Unmodified	_CPRPPPPA_					0	0	0			REV__ENSG00000156858|ENST00000300835|PRR14	REV__ENSG00000156858|ENST00000300835|PRR14	MULTI-MSMS	OvCa99_classI_Rep5	1	417.7176513671875	2	417.718173	833.421793	1.7448	0.00072883	-3.4359	-0.0014352	-1.6911	-0.0007064	417.7166426496585	144.78	1.5205	144.78	143.91	145.43	0					51	31	2	0	0	0	0.68312	1	16895	16895		46.766	0	1	78574	+		3346	20497	2525	2535	4595	4595					-0.0015807848903932609
CPRRRLVLL	9	Unmodified	_CPRRRLVLL_					0	0	0			REV__ENSG00000124391|ENST00000244241|IL17C	REV__ENSG00000124391|ENST00000244241|IL17C	MULTI-MSMS	OvCa9_classI_Rep3	3	563.3536987304688	2	563.355502	1124.69645	-1.0854	-0.00061147	-3.9012	-0.0021977	-4.9866	-0.0028092	563.3535121729102	117.2	1.8826	116.17	115.84	117.73	-1.0324					63	37	2	0	0	0	0.44294	1	8831	8831		47.916	1.9636	1	2467900	+		3347	18685	2526	2536	4596	4596					0.13909158989940806
CPRSMLALPL	10	Carbamidomethyl (C)	_C(Carbamidomethyl (C))PRSMLALPL_	C(1)PRSMLALPL		C(66)PRSMLALPL		0	1	0			REV__ENST00000278671.9_1_11:71809441-71810244:-|nuORF	REV__ENST00000278671.9_1_11:71809441-71810244:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	579.310302734375	2	579.312112	1156.60967	-0.99433	-0.00057603	-0.29269	-0.00016956	-1.287	-0.00074558	579.3119014879636	98.774	1.8386	97.881	97.41	99.248	-0.89306					101	36	5	0	0	0	0.41408	1	8983	8983		66.429	7.6473	1	886160	+		3348	24110	2527	2537	4597	4597	284				0.03762991653206882
CPSESRAP	8	Unmodified	_CPSESRAP_					0	0	0		ENST00000551209.5_3_12:110427599-110429519:-|nuORF	ENST00000551209.5_3_12:110427599-110429519:-|nuORF	ENST00000551209.5_3_12:110427599-110429519:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	422.73828125	2	423.692352	845.370152	2.1737	0.00092098	0.95155	0.00040317	3.1252	0.0013241	423.69276936254647	87.177	0.40836	87.177	87.054	87.463	0					11	9	2	0	0	0	0.028476	1	9260	9260		21.96	1.013	1	201340			3349	13597	2528	2538	4598	4598					-0.058718669735981166
CPSSTCCTPQC	11	Carbamidomethyl (C)	_CPSSTCCTPQC(Carbamidomethyl (C))_	CPSSTC(0.082)C(0.082)TPQC(0.836)		C(-53)PSSTC(-10)C(-10)TPQC(10)		0	1	0			REV__ENSG00000221859|ENST00000380095|KRTAP10-10	REV__ENSG00000221859|ENST00000380095|KRTAP10-10	MULTI-MSMS	OvCa99_classI_Rep5	1	593.7073974609375	2	593.703419	1185.39229	2.6055	0.0015469	3.1405	0.0018645	5.746	0.0034114	593.7051440158917	121.26	1.3009	121.26	120.92	122.22	0					68	28	3	0	0	0	0.50928	1	13930	13930		52.937	8.5595	4	1992900	+		3350	22696	2529	2539	4599	4599	262				-0.1929951467400315
CPSVGDRSSI	10	Unmodified	_CPSVGDRSSI_					0	0	0			REV__AluSq2_dup31738|chrX:40110728-40111012:-|1.3544955157046434|0.0546003177932892|4.63|429.0|17|1|anti-sense	REV__AluSq2_dup31738|chrX:40110728-40111012:-|1.3544955157046434|0.0546003177932892|4.63|429.0|17|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	511.2250671386719	2	510.742573	1019.47059	0.70854	0.00036188	-0.89317	-0.00045618	-0.18463	-9.4297E-05	510.74236194966005	42.799	0.7402	40.089	39.621	40.361	-2.7097					17	14	2	0	0	0	0.026714	1	2321	2321		51.193	18.38	1	19847	+		3351	15607	2530	2540	4600	4600					-0.038362547105975864
CPTGVPSPREL	11	Unmodified	_CPTGVPSPREL_					0	0	0		ENST00000564556.1_1_16:2048515-2049688:-|nuORF	ENST00000564556.1_1_16:2048515-2049688:-|nuORF	ENST00000564556.1_1_16:2048515-2049688:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2884521484375	2	578.294973	1154.57539	-7.6021	-0.0043963	-1.6299	-0.00094256	-9.232	-0.0053388	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.43993	1	14128	14128		58.23	10.314	1	1429200			3352	13808	2531	2541	4601	4601					0.004288667659693601
CPVARFPPV	9	Unmodified	_CPVARFPPV_					0	0	0			REV__ENST00000415912.6_1_1:21545281-21545563:-|nuORF	REV__ENST00000415912.6_1_1:21545281-21545563:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.6986999511719	2	493.26803	984.521507	-1.9631	-0.00096832	4.2484	0.0020956	2.2854	0.0011273	493.26995937104755	49.571	1.6073	46.429	46.095	47.702	-3.1416					53	30	3	0	0	0	0.027462	1	2812	2812		47.916	3.7988	1	288080	+		3353	25539	2532	2542	4602	4602					0.028627391249187895
CPVPRKPP	8	Unmodified	_CPVPRKPP_					0	0	0		ENST00000398712.6_1_8:145154840-145157977:-|nuORF	ENST00000398712.6_1_8:145154840-145157977:-|nuORF	ENST00000398712.6_1_8:145154840-145157977:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	447.2569885253906	2	447.254923	892.495293	1.6057	0.00071817	1.2093	0.00054087	2.815	0.001259	447.25529751520656	157.11	0.5508	157.11	156.9	157.45	0					16	10	2	0	0	0	0.74816	1	18431	18431		15.636	0.97212	1	58472			3354	11375	2533	2543	4603	4603					0.04474469953436255
CPVTQKRGSHK	11	Unmodified	_CPVTQKRGSHK_					0	0	0			REV__KBTBD8|p.K300R|1|0.29|ENSG00000163376|chr3:67003866-67003866|A/G|missense_variant	REV__KBTBD8|p.K300R|1|0.29|ENSG00000163376|chr3:67003866-67003866|A/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	620.8303833007812	2	620.832588	1239.65062	-2.1733	-0.0013492	0.96154	0.00059696	-1.2117	-0.00075227	620.8333350438218	126.55	0.98457	125.14	124.83	125.81	-1.4143					38	19	3	0	0	0	0.68299	1	12038	12038		40.058	5.8856	1	45405	+		3355	28324	2534	2544	4604	4604					0.040384690170412796
CPWIHGQT	8	Unmodified	_CPWIHGQT_					0	0	0			REV__ENST00000341865.8_1_6:42073427-42073679:-|nuORF	REV__ENST00000341865.8_1_6:42073427-42073679:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	471.2198486328125	2	471.218537	940.422522	-0.63322	-0.00029839	3.1278	0.0014739	2.4946	0.0011755	471.21990643828923	35.028	0.5674	35.028	34.772	35.339	0					19	11	2	0	0	0	0.69415	1	1741	1741		44.531	0	1	437240	+		3356	24642	2535	2545	4605	4605					-0.050072838399728425
CPWLPQAEAL	10	Unmodified	_CPWLPQAEAL_					0	0	0			REV__ENST00000597086.1_19:21265051-21281007:+|nuORF	REV__ENST00000597086.1_19:21265051-21281007:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.3491821289062	2	564.281334	1126.54812	1.7287	0.00097548	4.3254	0.0024407	6.0541	0.0034162	564.2832432147695	90.04	0.69999	87.465	87.05	87.75	-2.575					16	13	2	0	0	0	0.026688	1	7720	7720		19.104	4.9664	1	66828	+		3357	27998	2536	2546	4606	4606					-0.01009616774422284
CPWLPQAEAL	10	Unmodified	_CPWLPQAEAL_					0	0	0			REV__ENST00000597086.1_19:21265051-21281007:+|nuORF	REV__ENST00000597086.1_19:21265051-21281007:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	564.281334	1126.54812	1.9262	0.0010869	2.94	0.001659	4.8662	0.0027459	564.2822145103138	88.842	0.68887	87.474	87.135	87.823	-1.3676	0.0046706	-0.00085164	NaN	19.104	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44562	+		3358	27998	2536	2546							-0.01009616774422284
CQAHGQCRQI	10	Unmodified	_CQAHGQCRQI_					0	0	0		ENST00000494143.5_1_10:71899068-71899281:-|nuORF	ENST00000494143.5_1_10:71899068-71899281:-|nuORF	ENST00000494143.5_1_10:71899068-71899281:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.2984619140625	2	572.260942	1142.50733	-0.5252	-0.00030055	3.9902	0.0022834	3.465	0.0019829	572.2627212349014	66.386	0.41228	66.386	66.288	66.7	0					12	9	2	0	0	0	0.026782	1	6182	6182		30.318	7.2752	1	163850			3359	12751	2537	2547	4607	4607					-0.05822281365681192
CQFLRWRA	8	Unmodified	_CQFLRWRA_					0	0	0			REV__ENSG00000177854|ENST00000369982|TMEM187	REV__ENSG00000177854|ENST00000369982|TMEM187	MULTI-SECPEP	OvCa9_classI_Rep4_	4	539.3206787109375	2	540.282003	1078.54945	-1.8365	-0.00099224	-4.0737	-0.0022009	-5.9102	-0.0031932	540.2798303186796	100.43	1.017	98.161	97.775	98.792	-2.2665					24	19	2	0	0	0	0.028476	1	9044	9044		19.36	0	1	57362	+		3360	22029	2538	2548	4608	4608					0.013320621050070258
CQFPKIGAH	9	Unmodified	_CQFPKIGAH_					0	0	0			REV__ENSG00000171448|ENST00000373656|ZBTB26	REV__ENSG00000171448|ENST00000373656|ZBTB26	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.305908203125	2	500.755287	999.496021	2.4598	0.0012317	2.6159	0.0013099	5.0757	0.0025417	501.25872532799326	96.521	0.12466	96.521	96.418	96.543	0					4	2	2	0	0	0	0.027462	1	10570	10570		28.254	20.023	1	89559	+		3361	21614	2539	2549	4609	4609					-0.0037473539750862983
CQHSCTKPD	9	Unmodified	_CQHSCTKPD_					0	0	0			REV__ENST00000540636.5_3_9:136028823-136028979:-|nuORF	REV__ENST00000540636.5_3_9:136028823-136028979:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.749755859375	2	509.707676	1017.4008	-0.20748	-0.00010576	-0.11953	-6.0928E-05	-0.32702	-0.00016668	509.7081978103088	43.249	0.24937	43.249	43.143	43.393	0					12	5	3	0	0	0	0.02744	1	2827	2827		71.877	32.625	1	93165	+		3362	27354	2540	2550	4610	4610					-0.10720456650858523
CQKRACGAITV	11	Unmodified	_CQKRACGAITV_					0	0	0			REV__KIAA0319|p.H662Qfs*17|1|0.04|ENSG00000137261|chr6:24569908-24569908|G/-|frameshift_variant	REV__KIAA0319|p.H662Qfs*17|1|0.04|ENSG00000137261|chr6:24569908-24569908|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.297607421875	2	575.296993	1148.57943	-0.80706	-0.0004643	3.1186	0.0017941	2.3116	0.0013299	575.2987375890002	99.043	0.67466	96.718	96.433	97.108	-2.3253					43	12	4	0	0	0	0.56391	1	8860	8860		47.96	5.0953	1	1446600	+		3363	19442	2541	2551	4611	4611					0.011086329880072299
CQLLAGGQPIQ	11	Unmodified	_CQLLAGGQPIQ_					0	0	0		chr10:5773941-5783324|88|60.59|0.56|6.74|-|0|TE_info:L1PBa,L1PBa_dup1536,L1,LINE,donor,-,5783324,5784958|GDI2,None|2	chr10:5773941-5783324|88|60.59|0.56|6.74|-|0|TE_info:L1PBa,L1PBa_dup1536,L1,LINE,donor,-,5783324,5784958|GDI2,None|2	chr10:5773941-5783324|88|60.59|0.56|6.74|-|0|TE_info:L1PBa,L1PBa_dup1536,L1,LINE,donor,-,5783324,5784958|GDI2,None|2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.8060302734375	2	564.297516	1126.58048	0.16928	9.5523E-05	4.0192	0.002268	4.1884	0.0023635	564.2999937124616	99.998	1.2271	97.673	97.366	98.593	-2.3253					46	23	3	0	0	0	0.025594	1	9018	9018		41.427	6.2259	1	187840			3364	277	2542	2552	4612	4612					0.02225170628594242
CQLLAGGQPIQ	11	Unmodified	_CQLLAGGQPIQ_					0	0	0		chr10:5773941-5783324|88|60.59|0.56|6.74|-|0|TE_info:L1PBa,L1PBa_dup1536,L1,LINE,donor,-,5783324,5784958|GDI2,None|2	chr10:5773941-5783324|88|60.59|0.56|6.74|-|0|TE_info:L1PBa,L1PBa_dup1536,L1,LINE,donor,-,5783324,5784958|GDI2,None|2	chr10:5773941-5783324|88|60.59|0.56|6.74|-|0|TE_info:L1PBa,L1PBa_dup1536,L1,LINE,donor,-,5783324,5784958|GDI2,None|2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	564.297516	1126.58048	-0.5627	-0.00031753	4.1157	0.0023225	3.553	0.0020049	564.3003586479568	99.462	0.87405	97.777	97.423	98.297	-1.685	-0.011269	-4.7461E-05	NaN	49.536	45	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164020			3365	277	2542	2552							0.02225170628594242
CQLVQLKQPLI	11	Unmodified	_CQLVQLKQPLI_					0	0	0			REV__nc|ENSG00000182240|Q9Y5Z0-3|BACE2	REV__nc|ENSG00000182240|Q9Y5Z0-3|BACE2	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8826293945312	2	641.881216	1281.74788	-1.8585	-0.0011929	4.0503	0.0025998	2.1918	0.0014069	641.8836457762243	148.91	0.99602	147.48	146.88	147.87	-1.4344					50	20	3	0	0	0	0.72466	1	14675	14675		19.997	1.7347	1	64864	+		3366	29039	2543	2553	4613	4613					0.11827438173372684
CQPLHYPVI	9	Unmodified	_CQPLHYPVI_					0	0	0		ENSG00000177174|ENST00000317861|OR14C36	ENSG00000177174|ENST00000317861|OR14C36	ENSG00000177174|ENST00000317861|OR14C36	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.2800903320312	2	535.278595	1068.54264	-1.5866	-0.00084927	2.9951	0.0016032	1.4085	0.00075395	535.2801679388406	73.829	1.4846	70.433	70.076	71.56	-3.3961					66	30	3	0	0	0	0.27546	1	5741	5741		65.803	7.0212	1	827350			3367	7664	2544	2554	4614	4614					0.011107044337904881
CQPQQPDHS	9	Unmodified	_CQPQQPDHS_					0	0	0		ENST00000356462.10_1_18:55992307-55996250:+|nuORF	ENST00000356462.10_1_18:55992307-55996250:+|nuORF	ENST00000356462.10_1_18:55992307-55996250:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.242431640625	2	520.216723	1038.41889	0.90758	0.00047214	-4.0833	-0.0021242	-3.1758	-0.0016521	520.2165400472824	123.18	0.1412	123.18	123.09	123.23	0					4	2	2	0	0	0	0.027462	1	14197	14197		19.997	12.306	1	18452			3368	10696	2545	2555	4615	4615					-0.09877998404499522
CQQVISCMF	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))QQVISCMF_	C(0.993)QQVISC(0.007)MF		C(22)QQVISC(-22)MF		0	1	0			REV__ENSG00000175809|ENST00000323684|CBLL2	REV__ENSG00000175809|ENST00000323684|CBLL2	MULTI-MSMS	OvCa9_classI_Rep2	2	558.2410278320312	2	558.237755	1114.46096	1.6261	0.00090774	4.3287	0.0024164	5.9548	0.0033242	558.2399257549795	129.07	1.6804	128.84	128.53	130.21	-0.22696					70	33	3	0	0	0	0.42676	1	12679	12679		49.442	8.6634	2	122720	+		3369	21917	2546	2556	4616	4616	247				-0.09169482311995125
CQQYAQAGGSA	11	Unmodified	_CQQYAQAGGSA_					0	0	0		ENST00000395750.5_1_11:35338967-35344128:-|nuORF;ENST00000449068.1_1_11:35338967-35441551:-|nuORF	ENST00000395750.5_1_11:35338967-35344128:-|nuORF	ENST00000395750.5_1_11:35338967-35344128:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.3052978515625	2	542.22983	1082.44511	0.69653	0.00037768	-3.9908	-0.0021639	-3.2943	-0.0017863	542.2277268975015	74.451	0.66505	74.451	74.176	74.841	0					31	16	3	0	0	0	0.02557	1	7338	7338		24.519	7.0512	1	755060			3370	11297	2547	2557	4617	4617					-0.09281729233020997
CQRRALQV	8	Unmodified	_CQRRALQV_					0	0	0			REV__ENSG00000166106|ENST00000299164|ADAMTS15	REV__ENSG00000166106|ENST00000299164|ADAMTS15	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.7955017089844	2	487.271635	972.528718	2.1407	0.0010431	-4.3515	-0.0021204	-2.2109	-0.0010773	487.26928521023615	75.017	0.56908	75.017	74.761	75.33	0					18	13	2	0	0	0	0.028476	1	7454	7454		33.516	0	1	185860	+		3371	21157	2548	2558	4618	4618					0.04135471725339812
CQRRALQV	8	Unmodified	_CQRRALQV_					0	0	0			REV__ENSG00000166106|ENST00000299164|ADAMTS15	REV__ENSG00000166106|ENST00000299164|ADAMTS15	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	487.271635	972.528718	-0.0057372	-2.7956E-06	-5.5207	-0.0026901	-5.5264	-0.0026929	487.26878621116055	77.971	0.58359	75.154	74.825	75.409	-2.8165	0.068814	-0.00055223	NaN	50.025	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29460	+		3372	21157	2548	2558							0.04135471725339812
CQSLLQCQFD	10	Unmodified	_CQSLLQCQFD_					0	0	0			REV__ENST00000481510.1_1_2:132515879-132524290:+|nuORF	REV__ENST00000481510.1_1_2:132515879-132524290:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.3074340820312	2	592.757366	1183.50018	0.86988	0.00051563	-4.1074	-0.0024347	-3.2375	-0.0019191	592.7547567518321	66.897	0.63174	66.897	66.739	67.371	0					27	15	2	0	0	0	0.026826	1	6274	6274		44.377	17.684	1	479070	+		3373	26479	2549	2559	4619	4619					-0.08423058756784485
CQVWYPLQQ	9	Unmodified	_CQVWYPLQQ_					0	0	0			REV__nc|ENSG00000165097|Q8NB78-2|KDM1B	REV__nc|ENSG00000165097|Q8NB78-2|KDM1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.3190307617188	2	582.778959	1163.54336	-1.1434	-0.00066636	-1.8181	-0.0010595	-2.9615	-0.0017259	582.7778338266751	34.093	0.47706	34.093	33.921	34.398	0					21	9	3	0	0	0	0.027462	1	1621	1621		29.15	4.0236	1	114060	+		3374	21056	2550	2560	4620	4620					-0.03186500917172452
CQYRFLCSL	9	Unmodified	_CQYRFLCSL_					0	0	0			REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|53|2|sense	REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|53|2|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	566.8154296875	2	566.767537	1131.52052	0.48891	0.0002771	0.9466	0.0005365	1.4355	0.0008136	566.7696195686832	87.034	0.204	85.603	85.438	85.642	-1.4311					5	3	2	0	0	0	0.027462	1	7559	7559		19.997	5.8596	1	6985.7	+		3375	28390	2551	2561	4621	4621					-0.03997843306319737
CRAEPEAGE	9	Unmodified	_CRAEPEAGE_					0	0	0		ENST00000471909.1_1_21:45217249-45223652:+|nuORF;ENST00000467112.5_1_21:45213150-45223652:+|nuORF;TRAPPC10-RRP1|1|fusion;ENSG00000160214|ENST00000497547|RRP1	ENST00000471909.1_1_21:45217249-45223652:+|nuORF	ENST00000471909.1_1_21:45217249-45223652:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.27490234375	2	481.205824	960.397095	-0.77346	-0.00037219	2.2506	0.001083	1.4771	0.00071081	481.20822739025454	80.404	0.49107	77.693	77.367	77.858	-2.7106					11	9	2	0	0	0	0.027462	1	6568	6568		27.882	12.24	1	14538			3376	6048	2552	2562	4622	4622					-0.08468803153073168
CRERDMLLI	9	Unmodified	_CRERDMLLI_					0	0	0		tr|A0A553SS61|A0A553SS61_NIACIAspartateaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_02485PE=3SV=1	tr|A0A553SS61|A0A553SS61_NIACIAspartateaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_02485PE=3SV=1	tr|A0A553SS61|A0A553SS61_NIACIAspartateaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_02485PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	574.80078125	2	574.799368	1147.58418	3.1892	0.0018331	-0.83671	-0.00048094	2.3525	0.0013522	574.7987973401441	133.16	1.2243	131.64	131.36	132.59	-1.5257					61	24	4	0	0	0	0.079296	1	12854	12854		102.77	1.1726	1	206990			3377	34336	2553	2563	4623	4623					0.016295171308001954
CRETYKNII	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))RETYKNII_	C(1)RETYKNII		C(61)RETYKNII		0	1	0			REV__ENSG00000173431|ENST00000308227|RNASE8	REV__ENSG00000173431|ENST00000308227|RNASE8	MULTI-MSMS	OvCa99_classI_Rep5	1	598.811279296875	2	598.808248	1195.60194	1.5805	0.00094641	0.99489	0.00059575	2.5754	0.0015422	598.8087101763716	111.27	0.89409	111.27	110.8	111.7	0					51	19	4	0	0	0	0.31747	1	12660	12660		60.972	6.1956	1	2317900	+		3378	21772	2554	2564	4624	4624	245				0.011965556572931746
CRGLRKPR	8	Unmodified	_CRGLRKPR_					0	0	0			REV__nc|ENSG00000173805|P54257-3|HAP1	REV__nc|ENSG00000173805|P54257-3|HAP1	MULTI-MSMS	OvCa9_classI_Rep2	2	493.2986755371094	2	493.295445	984.576337	3.1299	0.001544	3.4668	0.0017102	6.5967	0.0032541	493.29693905803276	26.988	0.77444	24.278	24.097	24.871	-2.7097					47	21	3	0	0	0	0.7224	1	433	433		38.806	3.1879	1	72756	+		3379	21801	2555	2565	4625	4625					0.08343170716193526
CRHPPPGSHLL	11	Unmodified	_CRHPPPGSHLL_					0	0	0		ENSG00000111424|ENST00000549336|VDR;ENST00000547065.1_1_12:48238531-48272768:-|nuORF;nc|ENSG00000111424|P11473-2|VDR	ENSG00000111424|ENST00000549336|VDR	ENSG00000111424|ENST00000549336|VDR	MULTI-MSMS	OvCa9_classI_Rep2	2	607.314453125	2	607.316574	1212.6186	-0.66897	-0.00040628	-3.4592	-0.0021008	-4.1282	-0.0025071	607.3143684506753	105.84	1.7433	105.4	104.95	106.69	-0.43642					110	34	4	0	0	0	0.48315	1	9834	9834		45.972	12.051	1	513880			3380	2825	2556	2566	4626	4626					0.02079101333924882
CRIILNKNL	9	Unmodified	_CRIILNKNL_					0	0	0			REV__tr|A0A7D6VNW0|A0A7D6VNW0_9CLOTLTAsynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19795PE=3SV=1	REV__tr|A0A7D6VNW0|A0A7D6VNW0_9CLOTLTAsynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19795PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	543.8223266601562	2	543.826243	1085.63793	-0.26743	-0.00014544	-4.0592	-0.0022075	-4.3266	-0.0023529	543.8238335479551	109.17	1.1383	108.96	108.48	109.62	-0.21523					60	22	3	0	0	0	0.38529	1	10279	10279		53.351	2.1588	1	149690	+		3381	31209	2557	2567	4627	4627					0.09854057624806956
CRINDMWAH	9	Unmodified	_CRINDMWAH_					0	0	0			REV__ENST00000461874.1_1_6:31750021-31750195:-|nuORF	REV__ENST00000461874.1_1_6:31750021-31750195:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	573.255126953125	2	573.252585	1144.49062	1.5288	0.0008764	3.2319	0.0018527	4.7607	0.0027291	573.2542433412634	135.61	0.89313	135.61	135.31	136.21	0					45	18	3	0	0	0	0.36502	1	15805	15805		55.504	6.0627	1	518530	+		3382	26105	2558	2568	4628	4628					-0.07584782251637989
CRIPKRPRTR	10	Unmodified	_CRIPKRPRTR_					0	0	0			REV__nc|ENSG00000076321|Q9Y2M5-2|KLHL20	REV__nc|ENSG00000076321|Q9Y2M5-2|KLHL20	MULTI-MSMS	OvCa9_classI_Rep2	2	641.882568359375	2	641.88549	1281.75643	-4.6434	-0.0029805	0.11844	7.6024E-05	-4.5249	-0.0029045	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.83835	1	15711	15711		14.137	1.3254	1	543390	+		3383	16988	2559	2569	4629	4629					0.1268184965315413
CRKKGKKEGDL	11	Unmodified	_CRKKGKKEGDL_					0	0	0		nc|ENSG00000135622|O95754-2|SEMA4F	nc|ENSG00000135622|O95754-2|SEMA4F	nc|ENSG00000135622|O95754-2|SEMA4F	MULTI-MSMS	OvCa9_classI_Rep4_	4	631.3563842773438	2	631.355896	1260.69724	-0.86892	-0.0005486	-1.5694	-0.00099086	-2.4383	-0.0015395	631.3548552496973	66.121	0.9747	62.631	62.37	63.345	-3.4896					55	19	4	0	0	0	0.65267	1	4793	4793		23.523	0	1	620810			3384	15034	2560	2570	4630	4630					0.07731908848359126
CRLCFFFPAPQ	11	Unmodified	_CRLCFFFPAPQ_					0	0	0			REV__ENST00000337198.9_1_8:103876093-103876378:-|nuORF	REV__ENST00000337198.9_1_8:103876093-103876378:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	444.2504577636719	3	443.547466	1327.62057	2.2533	0.00099944	2.6367	0.0011695	4.89	0.0021689	443.8826490810184	65.128	0.5656	62.403	62.076	62.641	-2.7245					12	10	2	0	0	0	0.025864	1	4955	4955		22.562	0	1	8370.7	+		3385	24596	2561	2571	4631	4631					-0.030136059725009545
CRLDCKFFL	9	Unmodified	_CRLDCKFFL_					0	0	0			REV__ENST00000570443.2_1_6:37475385-37503375:+|nuORF	REV__ENST00000570443.2_1_6:37475385-37503375:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	572.7842407226562	2	572.78573	1143.55691	-1.9865	-0.0011378	0.43751	0.0002506	-1.549	-0.00088724	572.7859809262638	102.03	3.5096	101.27	100.67	104.18	-0.76401					164	70	5	0	0	0	0.19758	1	9414	9414		76.774	1.7308	1	1099900	+		3386	27739	2562	2572	4632	4632					-0.009129664096008128
CRLHPLAGAP	10	Unmodified	_CRLHPLAGAP_					0	0	0			REV__ENST00000546139.5_1_11:64037587-64037839:+|nuORF	REV__ENST00000546139.5_1_11:64037587-64037839:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	517.781005859375	2	517.781836	1033.54912	1.5399	0.00079732	-3.3699	-0.0017449	-1.83	-0.00094755	517.7799372441617	107.27	0.5004	107.27	107.06	107.56	0					24	11	3	0	0	0	0.74484	1	12092	12092		25.45	1.2474	1	987380	+		3387	27417	2563	2573	4633	4633					0.0336864238513499
CRLSVKFGATL	11	Unmodified	_CRLSVKFGATL_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-SECPEP	OvCa9_classI_Rep3	3	598.3157348632812	2	597.836808	1193.65906	1.2772	0.00076353	-0.46139	-0.00027584	0.81577	0.0004877	597.8347710743905	109.82	1.6124	108.67	108.35	109.96	-1.1444					51	30	4	0	0	0	0.025332	1	7871	7871		49.536	13.089	1	66573			3388	3124	2564	2574	4634	4634					0.06998022933680659
CRLWPLPVLGL	11	Unmodified	_CRLWPLPVLGL_					0	0	0			REV__ENST00000445118.6_1_1:790287-790512:+|nuORF	REV__ENST00000445118.6_1_1:790287-790512:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	422.92010498046875	3	422.917888	1265.73183	-0.455	-0.00019243	3.3273	0.0014072	2.8723	0.0012148	422.9192596252898	76.584	2.3986	73.645	73.128	75.526	-2.9389					139	49	4	0	0	0	0.70032	1	6111	6111		29.551	1.167	1	766350	+		3389	25885	2565	2575	4635	4635					0.10959776727077042
CRNSGWGNN	9	Unmodified	_CRNSGWGNN_					0	0	0		nc|ENSG00000177675|Q9NR16-3|CD163L1;CD163L1|p.D1069Kfs*27|1|0.38|ENSG00000177675|chr12:7374630-7374649|CACACCACGTGGGCATCGCT/-|frameshift_variant;nc|ENSG00000177675|Q9NR16-2|CD163L1;ENSG00000177675|ENST00000313599|CD163L1;nc|ENSG00000177675|Q9NR16-4|CD163L1	nc|ENSG00000177675|Q9NR16-3|CD163L1	nc|ENSG00000177675|Q9NR16-3|CD163L1	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.7841491699219	2	504.209232	1006.40391	-0.17597	-8.8725E-05	0.71483	0.00036042	0.53886	0.0002717	504.209298950074	70.51	0.39465	70.51	70.328	70.722	0					13	9	2	0	0	0	0.027462	1	6749	6749		39.253	19.256	1	155710			3390	204	2566	2576	4636	4636					-0.0990344548183657
CRPAPSPAPP	10	Unmodified	_CRPAPSPAPP_					0	0	0		ENST00000377735.7_1_19:46286802-46287057:-|nuORF	ENST00000377735.7_1_19:46286802-46287057:-|nuORF	ENST00000377735.7_1_19:46286802-46287057:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	496.7547912597656	2	496.752744	991.490935	0.60851	0.00030228	2.2992	0.0011422	2.9078	0.0014444	496.7538190668653	152.08	0.52281	152.08	151.83	152.36	0					19	10	2	0	0	0	0.66721	1	17823	17823		34.173	3.6689	1	130620			3391	11092	2567	2577	4637	4637					-0.005150392601422027
CRPNLYEKLK	10	Unmodified	_CRPNLYEKLK_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11;DNAH11|p.L1769Yfs*9|1|0.08|ENSG00000105877|chr7:21659007-21659008|-/TATGCAAGAAACGGTGCGTCATT|frameshift_variant	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MULTI-MSMS	OvCa9_classI_Rep3	3	632.3499755859375	2	632.34754	1262.68053	-0.26122	-0.00016518	4.3714	0.0027642	4.1102	0.0025991	632.3502430520261	100.24	0.52068	98.636	98.377	98.898	-1.6053					29	10	3	0	0	0	0.30325	1	6794	6794		80.455	5.4113	1	506800			3392	2511	2568	2578	4638	4638					0.059694079623795915
CRPPSLQLPM	10	Unmodified	_CRPPSLQLPM_					0	0	0		nc|ENSG00000181378|Q6ZU64-5|CFAP65;nc|ENSG00000181378|Q6ZU64-4|CFAP65;ENSG00000181378|ENST00000341552|CFAP65	nc|ENSG00000181378|Q6ZU64-5|CFAP65;ENSG00000181378|ENST00000341552|CFAP65	nc|ENSG00000181378|Q6ZU64-5|CFAP65	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.3137817382812	2	571.296462	1140.57837	1.035	0.00059127	1.3213	0.00075488	2.3563	0.0013461	571.296834501709	155.56	0.56317	155.56	155.22	155.79	0					13	10	2	0	0	0	0.027033	1	18215	18215		20.837	8.6303	1	14215			3393	15207;7928	2569	2579	4639	4639					0.013704186191262124
CRQGVRSF	8	Carbamidomethyl (C)	_C(Carbamidomethyl (C))RQGVRSF_	C(1)RQGVRSF		C(85)RQGVRSF		0	1	0			REV__ENST00000484770.1_1_10:97890462-97890561:+|nuORF	REV__ENST00000484770.1_1_10:97890462-97890561:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.2533264160156	2	505.253443	1008.49233	-1.3447	-0.00067943	-3.2037	-0.0016187	-4.5485	-0.0022981	505.25166196890405	55.226	1.2217	51.931	51.648	52.87	-3.2944					61	23	4	0	0	0	0.42208	1	3473	3473		85.359	13.482	1	369680	+		3394	26550	2570	2580	4640	4640	329				-0.011574051713637346
CRQQKVWLVSQ	11	Unmodified	_CRQQKVWLVSQ_					0	0	0			REV__ENSG00000100422|ENST00000216264|CERK	REV__ENSG00000100422|ENST00000216264|CERK	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.2858581542969	3	458.915206	1373.72379	-0.22234	-0.00010204	-2.6009	-0.0011936	-2.8233	-0.0012956	459.2482899318192	65.152	0.38474	61.666	61.456	61.84	-3.4854					11	7	2	0	0	0	0.026174	1	4685	4685		22.562	4.0305	1	29674	+		3395	17414	2571	2581	4641	4641					0.05187597739654848
CRQYLEYCIVP	11	Unmodified	_CRQYLEYCIVP_					0	0	0			REV__nc|ENSG00000122126|Q01968-2|OCRL	REV__nc|ENSG00000122126|Q01968-2|OCRL	MULTI-SECPEP	OvCa99_classI_Rep5	1	462.7619934082031	3	462.889669	1385.64718	2.1786	0.0010085	-2.4794	-0.0011477	-0.30071	-0.0001392	463.2222766444362	77.024	0.20235	77.024	76.882	77.085	0					5	4	2	0	0	0	0.026145	1	7756	7756		17.833	5.4003	1	78726	+		3396	18578	2572	2582	4642	4642					-0.030219618718092534
CRRADRETP	9	Unmodified	_CRRADRETP_					0	0	0		ENSG00000177051|ENST00000317683|FBXO46	ENSG00000177051|ENST00000317683|FBXO46	ENSG00000177051|ENST00000317683|FBXO46	MULTI-SECPEP	OvCa9_classI_Rep3	3	552.2918701171875	2	552.272364	1102.53017	-1.1397	-0.00062943	1.1398	0.00062951	0.00014167	7.8242E-08	552.2731123703181	95.589	0.7408	93.761	93.481	94.221	-1.8286					19	14	2	0	0	0	0.027462	1	6223	6223		32.812	9.2897	1	11607			3397	7652	2573	2583	4643	4643					-0.016989389765512897
CRRAGPGAGLG	11	Unmodified	_CRRAGPGAGLG_					0	0	0			REV__ENSG00000162722|ENST00000366481|TRIM58	REV__ENSG00000162722|ENST00000366481|TRIM58	MULTI-MSMS	OvCa9_classI_Rep2	2	507.765869140625	2	507.766717	1013.51888	0.43978	0.0002233	-0.99853	-0.00050702	-0.55875	-0.00028372	507.76605298589374	131.19	1.6749	130.96	130.26	131.93	-0.22696					79	33	3	0	0	0	0.68263	1	12905	12905		35.618	1.4457	1	124560	+		3398	20769	2574	2584	4644	4644					0.012662837199627575
CRRESALKSI	10	Unmodified	_CRRESALKSI_					0	0	0		ENST00000610262.1_1_2:86422776-86422875:+|nuORF	ENST00000610262.1_1_2:86422776-86422875:+|nuORF	ENST00000610262.1_1_2:86422776-86422875:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	581.8218994140625	2	581.821689	1161.62883	-2.3113	-0.0013447	1.5013	0.00087348	-0.80998	-0.00047126	581.8225826279196	136.77	1.3143	135.69	135.36	136.68	-1.0858					56	26	3	0	0	0	0.67987	1	11136	11136		32.751	1.2207	1	78530			3399	14310	2575	2585	4645	4645					0.05447664268490371
CRRMHQQP	8	Unmodified	_CRRMHQQP_					0	0	0		chr19:8136309-8136388|339|31.08|0.73|5.42|-|1|FBN3,FBN3|2	chr19:8136309-8136388|339|31.08|0.73|5.42|-|1|FBN3,FBN3|2	chr19:8136309-8136388|339|31.08|0.73|5.42|-|1|FBN3,FBN3|2	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.8310546875	2	528.25292	1054.49129	-0.55765	-0.00029458	-3.466	-0.0018309	-4.0236	-0.0021255	528.7515736537617	55.608	0.65907	55.608	55.273	55.932	0					25	15	3	0	0	0	0.028476	1	4576	4576		57.811	8.3697	1	321300			3400	426	2576	2586	4646	4646					-0.03377942811903267
CRSLEIQLI	9	Unmodified	_CRSLEIQLI_					0	0	0		PDE6H|p.I82Lfs*73|1|0.36|ENSG00000139053|chr12:14981465-14981465|G/-|frameshift_variant	PDE6H|p.I82Lfs*73|1|0.36|ENSG00000139053|chr12:14981465-14981465|G/-|frameshift_variant	PDE6H|p.I82Lfs*73|1|0.36|ENSG00000139053|chr12:14981465-14981465|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.8327026367188	2	537.802434	1073.59032	-1.1912	-0.0006406	-2.3063	-0.0012404	-3.4975	-0.001881	537.8010987188956	94.158	0.57316	91.69	91.386	91.96	-2.4685					14	11	2	0	0	0	0.027072	1	8268	8268		101.6	24.827	1	44031			3401	15486	2577	2587	4647	4647					0.05646358633998716
CRSLEIQLI	9	Unmodified	_CRSLEIQLI_					0	0	0		PDE6H|p.I82Lfs*73|1|0.36|ENSG00000139053|chr12:14981465-14981465|G/-|frameshift_variant	PDE6H|p.I82Lfs*73|1|0.36|ENSG00000139053|chr12:14981465-14981465|G/-|frameshift_variant	PDE6H|p.I82Lfs*73|1|0.36|ENSG00000139053|chr12:14981465-14981465|G/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	537.802434	1073.59032	-0.04156	-2.2351E-05	-2.8806	-0.0015492	-2.9221	-0.0015715	537.8011577162225	93.631	0.55508	91.669	91.328	91.884	-1.9617	-0.010041	-0.00026979	NaN	101.6	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44296			3402	15486	2577	2587							0.05646358633998716
CRSVPRLSL	9	Unmodified	_CRSVPRLSL_					0	0	0		ENST00000334351.7_1_1:24286360-24286471:+|nuORF	ENST00000334351.7_1_1:24286360-24286471:+|nuORF	ENST00000334351.7_1_1:24286360-24286471:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	515.79248046875	2	515.794943	1029.57533	-0.78303	-0.00040389	-4.1169	-0.0021235	-4.8999	-0.0025273	515.7927187364921	120.88	1.4824	120.68	120.36	121.84	-0.19718					73	29	3	0	0	0	0.29519	1	11668	11668		63.534	13.998	1	156340			3403	10481	2578	2588	4648	4648					0.061729115566322434
CRTPRGTVVA	10	Unmodified	_CRTPRGTVVA_					0	0	0		ENSG00000215182|ENST00000621226|MUC5AC;ENST00000358378.6_11:1212786-1216326:+|nuORF	ENSG00000215182|ENST00000621226|MUC5AC	ENSG00000215182|ENST00000621226|MUC5AC	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.2396850585938	2	530.290025	1058.5655	0.13452	7.1336E-05	0.11468	6.0815E-05	0.2492	0.00013215	530.2898756984948	62.624	0.59848	62.624	62.378	62.976	0					34	14	3	0	0	0	0.026956	1	5633	5633		34.173	3.6689	1	1949700			3404	9203	2579	2589	4649	4649					0.03855723551259871
CRTVERDRL	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))RTVERDRL_	C(1)RTVERDRL		C(79)RTVERDRL		0	1	0			REV__nc|ENSG00000111802|O95551-3|TDP2	REV__nc|ENSG00000111802|O95551-3|TDP2	MULTI-MSMS	OvCa9_classI_Rep3	3	602.8182983398438	2	602.814396	1203.61424	2.3119	0.0013936	3.5907	0.0021645	5.9026	0.0035582	602.8178832936115	105.68	1.4579	104.33	103.94	105.4	-1.3482					114	27	8	0	0	0	0.18193	1	7436	7436		79.451	10.664	1	605980	+		3405	18061	2580	2590	4650	4650	199				0.020575921203317193
CRTVSVPVPEL	11	Unmodified	_CRTVSVPVPEL_					0	0	0			REV__ENSG00000196704|ENST00000359904|AMZ2	REV__ENSG00000196704|ENST00000359904|AMZ2	MULTI-MSMS	OvCa9_classI_Rep4_	4	600.8246459960938	2	600.326273	1198.63799	-2.8982	-0.0017399	-1.8386	-0.0011037	-4.7368	-0.0028436	600.3250269871453	152.11	1.1286	150.68	150.36	151.49	-1.435					68	24	4	0	0	0	0.7046	1	15102	15102		28.081	3.5623	1	134150	+		3406	22858	2581	2591	4651	4651					0.04662012834160123
CRVLISSVEL	10	Unmodified	_CRVLISSVEL_					0	0	0			REV__tr|A0A7D6VUH6|A0A7D6VUH6_9CLOTHomoserinedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20610PE=3SV=1	REV__tr|A0A7D6VUH6|A0A7D6VUH6_9CLOTHomoserinedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20610PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.8145141601562	2	559.815541	1117.61653	3.9956	0.0022368	-3.6641	-0.0020512	0.3315	0.00018558	559.813249709843	134.7	2.6126	133.16	132.47	135.08	-1.5437					137	52	4	0	0	0	0.58067	1	13057	13057		44.377	3.8046	1	191680	+		3407	31678	2582	2592	4652	4652					0.06242627805431766
CRVRPFPPGL	10	Unmodified	_CRVRPFPPGL_					0	0	0		ENST00000486662.1_1_2:128283908-128284055:-|nuORF	ENST00000486662.1_1_2:128283908-128284055:-|nuORF	ENST00000486662.1_1_2:128283908-128284055:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	571.3145751953125	2	571.318586	1140.62262	-4.9073	-0.0028036	1.2259	0.00070039	-3.6814	-0.0021033	571.3191228524472	155.35	0.37735	155.12	154.97	155.34	-0.22697					16	11	2	0	0	0	0.72319	1	15831	15831		27.882	3.3631	1	11839			3408	12624	2583	2593	4653	4653					0.05793190827625949
CSGMTMVH	8	Unmodified	_CSGMTMVH_					0	0	0		ENST00000587261.5_1_18:39637878-39644709:+|nuORF	ENST00000587261.5_1_18:39637878-39644709:+|nuORF	ENST00000587261.5_1_18:39637878-39644709:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	433.17144775390625	2	433.171884	864.329215	1.9505	0.00084491	-1.8497	-0.00080124	0.10081	4.3668E-05	433.17100760562903	63.152	4.2639	60.118	58.202	62.466	-3.0339					141	92	2	0	0	0	0.73288	1	2444	2444		35.201	10.998	1	38128			3409	14059	2584	2594	4654	4654					-0.1083766760908702
CSGNDLEQ	8	Unmodified	_CSGNDLEQ_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;ENST00000469881.1_1_11:3697391-3700990:-|nuORF	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	OvCa9_classI_Rep3	3	433.17181396484375	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.65062	1	1364	1364		53.351	12.779	1	60065			3410	2788	2585	2595	4655	4655					-0.10924467452775843
CSILSPLLET	10	Unmodified	_CSILSPLLET_					0	0	0			REV__nc|ENSG00000143951|O95876-3|WDPCP;REV__ENST00000409835.5_1_2:63587012-63815411:-|nuORF	REV__ENST00000409835.5_1_2:63587012-63815411:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.2959594726562	2	538.288825	1074.5631	-1.9989	-0.001076	-3.7091	-0.0019966	-5.7081	-0.0030726	538.2857193454166	61.392	0.41819	58.633	58.464	58.882	-2.7593					14	7	3	0	0	0	0.026931	1	4560	4560		37.812	11.119	1	10028	+		3411	19877;25483	2586	2596	4656	4656					0.028798303029361705
CSLVTQGVSLI	11	Carbamidomethyl (C)	_C(Carbamidomethyl (C))SLVTQGVSLI_	C(1)SLVTQGVSLI		C(53)SLVTQGVSLI		0	1	0			REV__ENST00000502279.2_1_12:133424766-133425368:-|nuORF	REV__ENST00000502279.2_1_12:133424766-133425368:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	588.8170166015625	2	588.818281	1175.62201	0.80844	0.00047603	-3.7503	-0.0022082	-2.9418	-0.0017322	588.8159508434318	128.23	0.78979	128.01	127.74	128.53	-0.22696					46	15	4	0	0	0	0.50761	1	12553	12553		53.089	6.6322	1	167000	+		3412	26823	2587	2597	4657	4657	331				0.04122306597264469
CSLVVGDFAPD	11	Carbamidomethyl (C)	_C(Carbamidomethyl (C))SLVVGDFAPD_	C(1)SLVVGDFAPD		C(55)SLVVGDFAPD		0	1	0		ENST00000310396.9_1_7:120629517-120629739:+|nuORF	ENST00000310396.9_1_7:120629517-120629739:+|nuORF	ENST00000310396.9_1_7:120629517-120629739:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	590.2679443359375	2	590.271164	1178.52777	-7.7051	-0.0045481	3.5254	0.0020809	-4.1797	-0.0024671	590.2732006658329	159.89	2.9332	158.56	157.96	160.89	-1.3316					148	58	4	0	0	0	0.48738	1	13835	13835		54.776	7.119	1	239760			3413	10283	2588	2598	4658	4658	104				-0.05434832224887032
CSMSFPGH	8	Unmodified	_CSMSFPGH_					0	0	0			REV__SVA_D_dup912|chr11:73935626-73937666:-|1.861451030615439|0.3832838640500095|2.28|429.0|63|2|anti-sense	REV__SVA_D_dup912|chr11:73935626-73937666:-|1.861451030615439|0.3832838640500095|2.28|429.0|63|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1714172363281	2	433.170198	864.325844	2.6506	0.0011482	0.052767	2.2857E-05	2.7034	0.001171	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.7043	1	1397	1397		42.474	13.325	1	60065	+		3414	29468	2589	2599	4659	4659					-0.11174594391422943
CSPGNTASE	9	Unmodified	_CSPGNTASE_					0	0	0		nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L	nc|ENSG00000009413|O60673-2|REV3L	nc|ENSG00000009413|O60673-2|REV3L	MULTI-MSMS	OvCa9_classI_Rep3	3	433.17169189453125	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.5811	1	1411	1411		34.173	0.65696	1	60065			3415	929	2590	2600	4660	4660					-0.10924467452787212
CSPLGKESPL	10	Unmodified	_CSPLGKESPL_					0	0	0		ENSG00000140470|ENST00000268070|ADAMTS17;nc|ENSG00000140470|Q8TE56-2|ADAMTS17;ENST00000378898.8_1_15:100603866-100879329:-|nuORF	ENSG00000140470|ENST00000268070|ADAMTS17	ENSG00000140470|ENST00000268070|ADAMTS17	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.7976684570312	2	515.765517	1029.51648	-0.98929	-0.00051024	-2.6415	-0.0013624	-3.6308	-0.0018726	515.76399721016	49.529	0.61401	49.529	49.33	49.944	0					25	13	2	0	0	0	0.02676	1	3694	3694		41.427	0	1	555400			3416	4844	2591	2601	4661	4661					0.0029039047165042575
CSQEEAGAA	9	Unmodified	_CSQEEAGAA_					0	0	0		nc|ENSG00000005379|O95153-2|TSPOAP1;ENSG00000005379|ENST00000343736|TSPOAP1;nc|ENSG00000005379|O95153-3|TSPOAP1	nc|ENSG00000005379|O95153-2|TSPOAP1	nc|ENSG00000005379|O95153-2|TSPOAP1	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1717834472656	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.5811	3	1818	1818;1843;1933		34.173	4.331	1	60065			3417	852	2592	2602	4662;4663;4664	4662					-0.10924467452787212
CSQIMMVNKSF	11	2 Oxidation (M)	_CSQIM(Oxidation (M))M(Oxidation (M))VNKSF_		CSQIM(1)M(1)VNKSF		CSQIM(46)M(46)VNKSF	0	0	2			REV__ENSG00000142871|ENST00000451137|CCN1	REV__ENSG00000142871|ENST00000451137|CCN1	MULTI-MSMS	OvCa99_classI_Rep5	1	440.53363037109375	3	440.531265	1318.57196	0.89791	0.00039556	1.9852	0.00087455	2.8831	0.0012701	440.5320074129538	65.302	0.83157	65.302	65.072	65.904	0					51	20	4	0	0	0	0.58642	1	6006	6006		45.908	6.6553	1	4240400	+		3418	19808	2593	2603	4665	4665		450;451			-0.07457887394548379
CSTCIHVC	8	Unmodified	_CSTCIHVC_					0	0	0			REV__chr13:43059012-43068930|141|10.11|0.21|5.56|+|1|TE_info:L1PB1,L1PB1_dup10508,L1,LINE,donor,-,43056899,43059012|None,DNAJC15|26	REV__chr13:43059012-43068930|141|10.11|0.21|5.56|+|1|TE_info:L1PB1,L1PB1_dup10508,L1,LINE,donor,-,43056899,43059012|None,DNAJC15|26	MULTI-MSMS	OvCa9_classI_Rep3	3	433.17144775390625	2	433.171884	864.329215	2.6506	0.0011482	-3.8381	-0.0016626	-1.1875	-0.00051439	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.69415	8	1479	1289;1309;1479;1545;1644;1738;2064;2082		44.531	9.7505	1	60065	+		3419	15902	2594	2604	4666;4667;4668;4669;4670;4671;4672;4673	4668					-0.1083766760908702
CSTQTHKI	8	Unmodified	_CSTQTHKI_					0	0	0		ENSG00000116678|ENST00000349533|LEPR	ENSG00000116678|ENST00000349533|LEPR	ENSG00000116678|ENST00000349533|LEPR	MULTI-SECPEP	OvCa9_classI_Rep4_	4	459.2574157714844	2	459.229102	916.443651	-0.59944	-0.00027528	1.0719	0.00049224	0.47244	0.00021696	459.2295055101325	46.629	1.6845	43.557	43.189	44.873	-3.0724					66	32	3	0	0	0	0.028476	1	2584	2584		63.306	20.832	1	249860			3420	3194	2595	2605	4674	4674					-0.01791318531138586
CSTQTHKI	8	Unmodified	_CSTQTHKI_					0	0	0		ENSG00000116678|ENST00000349533|LEPR	ENSG00000116678|ENST00000349533|LEPR	ENSG00000116678|ENST00000349533|LEPR	MULTI-MATCH	OvCa9_classI_Rep2	2		2	459.229102	916.443651	0.063357	2.9095E-05	0.086263	3.9614E-05	0.14962	6.871E-05	459.2289998111613	46.489	0.94235	43.779	43.399	44.341	-2.7097	0.11133	-0.00064825	NaN	63.306	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64215			3421	3194	2595	2605							-0.01791318531138586
CSVSSCHL	8	Unmodified	_CSVSSCHL_					0	0	0			REV__ENST00000605945.1_1_6:28048508-28048712:-|nuORF	REV__ENST00000605945.1_1_6:28048508-28048712:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	418.1756591796875	2	418.175481	834.336409	0.54691	0.0002287	-0.26853	-0.00011229	0.27838	0.00011641	418.1752554716304	31.981	0.74546	31.981	31.807	32.553	0					28	14	3	0	0	0	0.66704	1	1357	1357		50.025	7.5501	1	322910	+		3422	28072	2596	2606	4675	4675					-0.08738611736998791
CTDEFPRDQ	9	Unmodified	_CTDEFPRDQ_					0	0	0			REV__ENSG00000120949|ENST00000263932|TNFRSF8	REV__ENSG00000120949|ENST00000263932|TNFRSF8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.8286743164062	2	555.729663	1109.44477	-0.61852	-0.00034373	4.1979	0.0023329	3.5794	0.0019892	555.7316180905034	66.03	0.43534	62.544	62.325	62.761	-3.4854					14	8	2	0	0	0	0.027462	1	4785	4785		23.042	0	1	36407	+		3423	18524	2597	2607	4676	4676					-0.1055714895287565
CTECFFDVL	9	Unmodified	_CTECFFDVL_					0	0	0			REV__nc|ENSG00000065989|P27815-4|PDE4A	REV__nc|ENSG00000065989|P27815-4|PDE4A	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.7240600585938	2	538.725003	1075.43545	-2.1387	-0.0011522	-3.8598	-0.0020794	-5.9985	-0.0032315	538.7227765525084	118.87	1.1966	117.53	117.26	118.46	-1.3444					52	22	4	0	0	0	0.59983	1	11178	11178		31.955	1.4512	1	100940	+		3424	28723	2598	2608	4677	4677					-0.09924633562764029
CTFFSNSCELM	11	Unmodified	_CTFFSNSCELM_					0	0	0		ENST00000420940.6_1_3:39137751-39138060:+|nuORF	ENST00000420940.6_1_3:39137751-39138060:+|nuORF	ENST00000420940.6_1_3:39137751-39138060:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	641.2545776367188	2	641.251059	1280.48757	1.4647	0.00093922	-2.471	-0.0015845	-1.0063	-0.0006453	641.249204094553	150.12	0.59972	150.12	149.84	150.44	0					19	11	2	0	0	0	0.63561	1	17578	17578		41.427	9.8968	1	135610			3425	11676	2599	2609	4678	4678					-0.14145838211311457
CTILVLPGYCV	11	Unmodified	_CTILVLPGYCV_					0	0	0			REV__nc|ENSG00000121270|Q96J66-2|ABCC11	REV__nc|ENSG00000121270|Q96J66-2|ABCC11	MULTI-SECPEP	OvCa99_classI_Rep5	1	591.35693359375	2	590.80887	1179.60319	2.5426	0.0015022	4.2537	0.0025131	6.7962	0.0040153	591.3128751470081	121.32	1.0259	121.32	121.1	122.13	0					26	22	2	0	0	0	0.025496	1	13965	13965		19.104	0	1	99771	+		3426	18534	2600	2610	4679	4679					0.02057053701832956
CTIPILPLPL	10	Unmodified	_CTIPILPLPL_					0	0	0		ENST00000263980.7_1_1:27480949-27481393:-|nuORF	ENST00000263980.7_1_1:27480949-27481393:-|nuORF	ENST00000263980.7_1_1:27480949-27481393:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3300170898438	2	540.330296	1078.64604	-1.5762	-0.00085169	1.2934	0.00069888	-0.28281	-0.00015281	540.3309156564876	138.68	4.2384	138.45	137.13	141.37	-0.22697					227	86	3	0	0	0	0.69986	1	13889	13889		30.504	7.4612	1	66382			3427	9921	2601	2611	4680	4680					0.10986191821598368
CTIQFHYL	8	Unmodified	_CTIQFHYL_					0	0	0		ENST00000265404.6_1_4:68472190-68472331:+|nuORF	ENST00000265404.6_1_4:68472190-68472331:+|nuORF	ENST00000265404.6_1_4:68472190-68472331:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.2789916992188	2	512.74967	1023.48479	0.2205	0.00011306	-3.4159	-0.0017515	-3.1954	-0.0016384	512.7480575178707	113.05	0.9389	111.6	111.11	112.05	-1.4461					40	18	3	0	0	0	0.028476	1	10491	10491		19.36	0	1	23714			3428	9950	2602	2612	4681	4681					-0.02601557491652784
CTKNLLLAR	9	Unmodified	_CTKNLLLAR_					0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	OvCa9_classI_Rep2	2	516.3030395507812	2	516.305144	1030.59573	-1.364	-0.00070426	-2.6442	-0.0013652	-4.0083	-0.0020695	516.3037096883031	61.9	2.366	59.14	58.568	60.934	-2.7593					127	45	4	0	0	0	0.50149	1	4596	4596		42.396	3.59	1	1077700			3429	6182	2603	2613	4682	4682					0.08166082216439463
CTKVVNVRL	9	Unmodified	_CTKVVNVRL_					0	0	0			REV__nc|ENSG00000100918|O95072-2|REC8	REV__nc|ENSG00000100918|O95072-2|REC8	MULTI-MSMS	OvCa9_classI_Rep2	2	516.30322265625	2	516.305144	1030.59573	-1.364	-0.00070426	-2.6442	-0.0013652	-4.0083	-0.0020695	516.3037096883031	61.9	2.366	59.14	58.568	60.934	-2.7593					127	45	4	0	0	0	0.16524	1	4636	4636		82.305	0	1	1077700	+		3430	17459	2604	2614	4683	4683					0.08166082216439463
CTKVVNVRL	9	Unmodified	_CTKVVNVRL_					0	0	0			REV__nc|ENSG00000100918|O95072-2|REC8	REV__nc|ENSG00000100918|O95072-2|REC8	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.3036499023438	2	516.305144	1030.59573	-0.62044	-0.00032034	-3.5467	-0.0018312	-4.1671	-0.0021515	516.303207209785	62.857	2.0837	59.399	58.962	61.046	-3.4577					108	42	4	0	0	0	0.13482	1	4364	4364		87.754	18.127	1	1463100	+		3431	17459	2604	2614	4684	4684					0.08166082216439463
CTNIYKILL	9	Unmodified	_CTNIYKILL_					0	0	0		nc|ENSG00000164362|O14746-3|TERT;ENSG00000164362|ENST00000310581|TERT	nc|ENSG00000164362|O14746-3|TERT	nc|ENSG00000164362|O14746-3|TERT	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.6646118164062	2	540.809728	1079.6049	2.5382	0.0013727	0.27818	0.00015044	2.8164	0.0015231	540.809655564155	89.172	0.47148	89.172	88.922	89.394	0					20	11	2	0	0	0	0.027462	1	9502	9502		15.642	0.77694	1	540210			3432	6451	2605	2615	4685	4685					0.06828430782115902
CTPEHQES	8	Unmodified	_CTPEHQES_					0	0	0		FCGBP|p.Q3457H|1|0.07|ENSG00000275395|chr19:39875620-39875620|C/G|missense_variant	FCGBP|p.Q3457H|1|0.07|ENSG00000275395|chr19:39875620-39875620|C/G|missense_variant	FCGBP|p.Q3457H|1|0.07|ENSG00000275395|chr19:39875620-39875620|C/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	465.2626953125	2	465.684724	929.354895	-0.47179	-0.0002197	1.2203	0.00056829	0.74855	0.00034859	465.68501217631143	94.767	1.0906	93.667	92.958	94.048	-1.0995					27	21	2	0	0	0	0.028476	1	8440	8440		33.516	15.191	1	16411			3433	14329	2606	2616	4686	4686					-0.11260778561438656
CTPFIEENNI	10	Unmodified	_CTPFIEENNI_					0	0	0			REV__ENSG00000120162|ENST00000262244|MOB3B	REV__ENSG00000120162|ENST00000262244|MOB3B	MULTI-MSMS	OvCa9_classI_Rep2	2	590.2703247070312	2	590.271164	1178.52777	-5.3385	-0.0031512	1.2334	0.00072802	-4.1051	-0.0024232	590.2717582667879	160.29	1.4468	160.06	159.83	161.28	-0.22697					54	29	2	0	0	0	0.58067	1	16302	16302		44.377	1.5129	1	41804	+		3434	18488	2607	2617	4687	4687					-0.054348322248642944
CTPFIEENNI	10	Unmodified	_CTPFIEENNI_					0	0	0			REV__ENSG00000120162|ENST00000262244|MOB3B	REV__ENSG00000120162|ENST00000262244|MOB3B	MULTI-MSMS	OvCa9_classI_Rep3	3	590.2679443359375	2	590.271164	1178.52777	-7.7051	-0.0045481	3.5254	0.0020809	-4.1797	-0.0024671	590.2732006658329	159.89	2.9332	158.56	157.96	160.89	-1.3316					148	58	4	0	0	0	0.59317	1	13919	13919		42.864	8.6917	1	239760	+		3435	18488	2607	2617	4688	4688					-0.054348322248642944
CTQLVQQIV	9	Carbamidomethyl (C)	_C(Carbamidomethyl (C))TQLVQQIV_	C(1)TQLVQQIV		C(51)TQLVQQIV		0	1	0		ENSG00000111913|ENST00000643898|RIPOR2;nc|ENSG00000111913|Q9Y4F9|RIPOR2	ENSG00000111913|ENST00000643898|RIPOR2	ENSG00000111913|ENST00000643898|RIPOR2	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.7913208007812	2	544.792066	1087.56958	-1.3996	-0.00076248	-1.9299	-0.0010514	-3.3295	-0.0018139	544.7909643849708	54.096	1.2817	50.848	50.517	51.798	-3.2474					45	24	4	0	0	0	0.40667	1	3357	3357		51.335	10.763	1	652890			3436	2868	2608	2618	4689	4689	27				0.029297682542846815
CTRLLRRRERR	11	Unmodified	_CTRLLRRRERR_					0	0	0			REV__ENSG00000165046|ENST00000379957|LETM2	REV__ENSG00000165046|ENST00000379957|LETM2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.2748107910156	3	505.635548	1513.88481	-1.2885	-0.00065152	-0.27565	-0.00013938	-1.5642	-0.0007909	505.6353615235087	54.092	0.8706	50.845	50.466	51.336	-3.2474					38	16	3	0	0	0	0.026401	1	3367	3367		8.4073	2.0864	1	73722	+		3437	21050	2609	2619	4690	4690					0.14842784896245576
CVAITGTLKL	10	Unmodified	_CVAITGTLKL_					0	0	0			REV__ENST00000512383.1_1_5:75964652-75969784:+|nuORF	REV__ENST00000512383.1_1_5:75964652-75969784:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.7944030761719	2	509.801903	1017.58925	3.3773	0.0017218	0.41721	0.00021269	3.7945	0.0019344	509.8019531374822	133.05	3.6208	131.53	130.01	133.63	-1.5202					129	72	3	0	0	0	0.60504	1	13023	13023		41.427	0	1	54066	+		3438	26969	2610	2620	4691	4691					0.08116144265068215
CVAITGTLKL	10	Unmodified	_CVAITGTLKL_					0	0	0			REV__ENST00000512383.1_1_5:75964652-75969784:+|nuORF	REV__ENST00000512383.1_1_5:75964652-75969784:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	509.801903	1017.58925	0.30246	0.00015419	3.1389	0.0016002	3.4414	0.0017544	509.8034908269963	131.98	2.8529	131.75	130.95	133.81	-0.22696	0.11757	0.00072282	NaN	41.427	101	57	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28294	+		3439	26969	2610	2620							0.08116144265068215
CVAITGTLKL	10	Unmodified	_CVAITGTLKL_					0	0	0			REV__ENST00000512383.1_1_5:75964652-75969784:+|nuORF	REV__ENST00000512383.1_1_5:75964652-75969784:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	509.801903	1017.58925	-0.44067	-0.00022465	4.1625	0.002122	3.7218	0.0018974	509.8039320686972	132.74	3.0112	131.62	130.79	133.8	-1.1249	-0.013227	0.0017665	NaN	41.427	78	60	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26235	+		3440	26969	2610	2620							0.08116144265068215
CVCAYMIFL	9	Carbamidomethyl (C),Oxidation (M)	_C(Carbamidomethyl (C))VCAYM(Oxidation (M))IFL_	C(0.5)VC(0.5)AYMIFL	CVCAYM(1)IFL	C(0)VC(0)AYMIFL	CVCAYM(49)IFL	0	1	1		chr13:43059012-43068930|141|10.11|0.21|5.56|+|1|TE_info:L1PB1,L1PB1_dup10508,L1,LINE,donor,-,43056899,43059012|None,DNAJC15|6;chr13:43058862-43068930|92|13.04|0.21|5.97|+|1|TE_info:L1PB1,L1PB1_dup10508,L1,LINE,donor,-,43056899,43058862|None,DNAJC15|6	chr13:43059012-43068930|141|10.11|0.21|5.56|+|1|TE_info:L1PB1,L1PB1_dup10508,L1,LINE,donor,-,43056899,43059012|None,DNAJC15|6	chr13:43059012-43068930|141|10.11|0.21|5.56|+|1|TE_info:L1PB1,L1PB1_dup10508,L1,LINE,donor,-,43056899,43059012|None,DNAJC15|6	MULTI-MSMS	OvCa99_classI_Rep5	1	568.2554321289062	2	568.252874	1134.49119	1.3377	0.00076015	1.0982	0.00062407	2.4359	0.0013842	568.2531360365803	144.53	0.62967	144.53	144.26	144.89	0					23	12	3	0	0	0	0.42921	1	16900	16900		49.211	6.7363	2	62538			3441	337	2611	2621	4692	4692	3;4	8			-0.07067123646811524
CVCLKFKF	8	Unmodified	_CVCLKFKF_					0	0	0		ENST00000511203.1_1_4:100869836-100870579:-|nuORF;ENST00000511348.1_1_4:100870420-100870579:-|nuORF	ENST00000511203.1_1_4:100869836-100870579:-|nuORF	ENST00000511203.1_1_4:100869836-100870579:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.28656005859375	2	494.261359	986.508165	-0.45698	-0.00022587	-3.4582	-0.0017092	-3.9151	-0.0019351	494.25935547493884	48.808	0.54704	46.047	45.729	46.276	-2.7603					14	10	2	0	0	0	0.028476	1	3055	3055		14.664	0	1	13960			3442	12982	2612	2622	4693	4693					0.014371650213092835
CVFHASDAA	9	Unmodified	_CVFHASDAA_					0	0	0			REV__ENST00000300456.4_1_9:131103041-131107595:+|nuORF	REV__ENST00000300456.4_1_9:131103041-131107595:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	460.70147705078125	2	460.700177	919.385802	0.14947	6.8859E-05	3.3295	0.0015339	3.479	0.0016028	460.701649762724	20.95	0.72861	20.95	20.776	21.504	0					35	19	2	0	0	0	0.50066	1	90	90		42.474	5.446	1	1022200	+		3443	24235	2613	2623	4694	4694					-0.07711580456555112
CVFLFNLRKA	10	Unmodified	_CVFLFNLRKA_					0	0	0		Harlequin-int_dup161|chr4:91353598-91357139:-|1.3911466287095282|0.2716421829311496|2.36|422.0|190|2|anti-sense	Harlequin-int_dup161|chr4:91353598-91357139:-|1.3911466287095282|0.2716421829311496|2.36|422.0|190|2|anti-sense	Harlequin-int_dup161|chr4:91353598-91357139:-|1.3911466287095282|0.2716421829311496|2.36|422.0|190|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.2197265625	3	404.230355	1209.66923	3.7306	0.001508	1.0474	0.00042339	4.778	0.0019314	404.2318472175432	90.483	0.26643	90.483	90.31	90.577	0					16	6	3	0	0	0	0.027084	1	9684	9684		11.636	3.8314	1	472770			3444	14365	2614	2624	4695	4695					0.0727863065890233
CVGKKLVL	8	Unmodified	_CVGKKLVL_					0	0	0			REV__ENST00000374866.7_1_2:190044402-190044480:-|nuORF	REV__ENST00000374866.7_1_2:190044402-190044480:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	430.2748718261719	2	430.275324	858.536095	0.20112	8.6536E-05	-3.9639	-0.0017056	-3.7628	-0.001619	430.27350674453226	109.1	1.7128	107.37	106.97	108.68	-1.7256					93	32	4	0	0	0	0.69415	1	10031	10031		44.531	0	1	507820	+		3445	25071	2615	2625	4696	4696					0.10116811273042003
CVGNDETQ	8	Unmodified	_CVGNDETQ_					0	0	0		ENST00000505025.1_1_4:184908875-184908935:+|nuORF	ENST00000505025.1_1_4:184908875-184908935:+|nuORF	ENST00000505025.1_1_4:184908875-184908935:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	433.17132568359375	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.7224	1	1642	1642		38.806	6.8513	1	60065			3446	12884	2616	2626	4697	4697					-0.10924467452787212
CVIKATPAVK	10	Unmodified	_CVIKATPAVK_					0	0	0		tr|A0A553SFH8|A0A553SFH8_NIACIDNA3'-5'helicaseOS=NialliacirculansOX=1397GN=CEQ21_08910PE=3SV=1	tr|A0A553SFH8|A0A553SFH8_NIACIDNA3'-5'helicaseOS=NialliacirculansOX=1397GN=CEQ21_08910PE=3SV=1	tr|A0A553SFH8|A0A553SFH8_NIACIDNA3'-5'helicaseOS=NialliacirculansOX=1397GN=CEQ21_08910PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.3119506835938	2	515.309895	1028.60524	0.67052	0.00034553	2.3918	0.0012325	3.0623	0.001578	515.3111559710834	35.314	1.6978	32.465	32.19	33.887	-2.849					108	33	5	0	0	0	0.60504	1	1141	1141		41.427	5.8083	1	2437400			3447	33040	2617	2627	4698	4698					0.09207850501934445
CVIPRRFK	8	Unmodified	_CVIPRRFK_					0	0	0			REV__tr|A0A553SJX8|A0A553SJX8_NIACIAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitalphaOS=NialliacirculansOX=1397GN=accAPE=3SV=1	REV__tr|A0A553SJX8|A0A553SJX8_NIACIAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitalphaOS=NialliacirculansOX=1397GN=accAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	509.80303955078125	2	509.802571	1017.59059	-0.41042	-0.00020923	2.7628	0.0014085	2.3524	0.0011993	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.75915	1	13688	13688		20.482	3.1169	1	150140	+		3448	30054	2618	2628	4699	4699					0.08249823144478796
CVKGKSSF	8	Unmodified	_CVKGKSSF_					0	0	0		ENST00000393784.7_1_5:172378384-172378771:+|nuORF	ENST00000393784.7_1_5:172378384-172378771:+|nuORF	ENST00000393784.7_1_5:172378384-172378771:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	428.2227783203125	2	428.223288	854.432024	2.1294	0.00091187	-2.0334	-0.00087077	0.095985	4.1103E-05	428.2222618775492	62.473	1.7234	59.439	58.937	60.66	-3.0339					58	35	3	0	0	0	0.67745	1	2245	2245		47.916	9.1095	1	42700			3449	11254	2619	2629	4700	4700					-0.00101515554456455
CVKKLLPFVM	10	Unmodified	_CVKKLLPFVM_					0	0	0			REV__ENST00000397276.6_1_14:23794476-23794560:+|nuORF	REV__ENST00000397276.6_1_14:23794476-23794560:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3429565429688	2	589.345423	1176.67629	-3.0463	-0.0017953	-1.118	-0.00065887	-4.1643	-0.0024542	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.69986	1	15076	15076		30.504	1.3336	1	272220	+		3450	25350	2620	2630	4701	4701					0.09502227215125458
CVKSTLSKHD	10	Unmodified	_CVKSTLSKHD_					0	0	0		ZNF33B|p.C451Sfs*7|1|0.04|ENSG00000196693|chr10:42593609-42593610|-/CACTGAAGGATTTC|frameshift_variant;ZNF33B|p.C698Wfs*38|1|0.06|ENSG00000196693|chr10:42592856-42592857|-/GCCAGCTTGATTCTGGCTCTTCTCCAGCCTCAAC|frameshift_variant;ENSG00000196693|ENST00000359467|ZNF33B	ZNF33B|p.C451Sfs*7|1|0.04|ENSG00000196693|chr10:42593609-42593610|-/CACTGAAGGATTTC|frameshift_variant	ZNF33B|p.C451Sfs*7|1|0.04|ENSG00000196693|chr10:42593609-42593610|-/CACTGAAGGATTTC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.28564453125	2	559.287148	1116.55974	1.6773	0.00093807	-2.7714	-0.00155	-1.0942	-0.00061196	559.2853993749533	33.558	2.4419	30.77	30.259	32.701	-2.7881					125	48	3	0	0	0	0.65434	1	957	957		35.618	6.4687	1	122450			3451	8642	2621	2631	4702	4702					0.0061258024893504626
CVLGPHGK	8	Unmodified	_CVLGPHGK_					0	0	0		ENSG00000125810|ENST00000246006|CD93	ENSG00000125810|ENST00000246006|CD93	ENSG00000125810|ENST00000246006|CD93	MULTI-MSMS	OvCa9_classI_Rep2	2	405.71832275390625	2	405.718173	809.421793	-0.3042	-0.00012342	1.8181	0.00073763	1.5139	0.00061421	405.7187689414806	119.3	1.6269	119.13	118.76	120.38	-0.17137					76	32	4	0	0	0	0.74361	1	11463	11463		29.842	0	1	350390			3452	3736	2622	2632	4703	4703					0.00945921510970038
CVLSLFLSEL	10	Unmodified	_CVLSLFLSEL_					0	0	0		ENST00000558506.1_1_14:103801937-103802258:+|nuORF	ENST00000558506.1_1_14:103801937-103802258:+|nuORF	ENST00000558506.1_1_14:103801937-103802258:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3085327148438	2	562.307018	1122.59948	1.6081	0.00090426	1.0727	0.00060321	2.6809	0.0015075	562.3076275952775	112.77	1.839	111.26	110.53	112.37	-1.5111					103	36	5	0	0	0	0.24387	1	10436	10436		87.754	16.459	1	1731000			3453	13698	2623	2633	4704	4704					0.0430870719962968
CVLTLRASWL	10	Unmodified	_CVLTLRASWL_					0	0	0		ENST00000255499.2_2_X:105969946-105970231:+|nuORF	ENST00000255499.2_2_X:105969946-105970231:+|nuORF	ENST00000255499.2_2_X:105969946-105970231:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.2824096679688	2	581.326076	1160.6376	1.5773	0.0009169	1.6685	0.00096992	3.2457	0.0018868	581.3266139898735	77.546	0.20709	77.546	77.422	77.629	0					6	4	2	0	0	0	0.027056	1	7825	7825		27.882	4.3595	1	69269			3454	9821	2624	2634	4705	4705					0.06370637904956311
CVLVRQHLPL	10	Unmodified	_CVLVRQHLPL_					0	0	0		ENST00000291295.13_1_19:47113368-47113650:+|nuORF	ENST00000291295.13_1_19:47113368-47113650:+|nuORF	ENST00000291295.13_1_19:47113368-47113650:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3416748046875	2	589.347343	1176.68013	-5.1334	-0.0030254	-2.3752	-0.0013998	-7.5086	-0.0044252	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.75594	1	12371	12371		24.203	0.68005	1	589610			3455	10096	2625	2635	4706	4706					0.09886033033194508
CVNYWFSLLA	10	Unmodified	_CVNYWFSLLA_					0	0	0			REV__XPO1-USP34|3|fusion	REV__XPO1-USP34|3|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	608.2962646484375	2	608.296985	1214.57942	3.6539	0.0022227	-4.1113	-0.0025009	-0.45739	-0.00027823	608.2942855637167	59.026	3.3501	55.911	55.036	58.386	-3.1147					203	93	3	0	0	0	0.71192	1	1937	1937		29.15	1.2673	1	283460	+		3456	32759	2626	2636	4707	4707					-0.01929043740301495
CVPIQQTWQG	10	Unmodified	_CVPIQQTWQG_					0	0	0			REV__ENSG00000007908|ENST00000333360|SELE	REV__ENSG00000007908|ENST00000333360|SELE	MULTI-SECPEP	OvCa9_classI_Rep4_	4	579.3312377929688	2	580.281866	1158.54918	0.11757	6.8223E-05	-2.2512	-0.0013063	-2.1336	-0.0012381	580.2803966706091	33.629	1.4383	30.841	30.309	31.747	-2.7881					47	28	2	0	0	0	0.027284	1	917	917		20.947	0	1	23027	+		3457	16440	2627	2637	4708	4708					-0.023754024055278933
CVPQHSLLH	9	Unmodified	_CVPQHSLLH_					0	0	0			REV__nc|ENSG00000140262|Q99081-4|TCF12	REV__nc|ENSG00000140262|Q99081-4|TCF12	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.25146484375	2	517.266019	1032.51748	2.2607	0.0011694	0.033634	1.7398E-05	2.2943	0.0011868	517.2663046703768	75.554	0.70782	75.554	75.407	76.115	0					26	17	2	0	0	0	0.027462	1	7600	7600		26.796	9.4311	1	534910	+		3458	28893	2628	2638	4709	4709					0.0025264963119298045
CVRCAEIKL	9	Carbamidomethyl (C)	_CVRC(Carbamidomethyl (C))AEIKL_	C(0.002)VRC(0.998)AEIKL		C(-27)VRC(27)AEIKL		0	1	0			REV__HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|168|1|anti-sense	REV__HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|168|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	546.2855224609375	2	546.288637	1090.56272	-1.7841	-0.00097466	-2.829	-0.0015454	-4.6131	-0.0025201	546.2868719902328	137.72	1.1662	136.63	136.24	137.41	-1.0858					55	23	3	0	0	0	0.27001	1	11211	11211		66.429	6.1353	2	134560	+		3459	28270	2629	2639	4710	4710	348				0.021061321020624746
CVSVQCQKQI	10	Unmodified	_CVSVQCQKQI_					0	0	0		nc|ENSG00000187164|A0MZ66-2|SHTN1;nc|ENSG00000187164|A0MZ66-8|SHTN1;nc|ENSG00000187164|A0MZ66-4|SHTN1;nc|ENSG00000187164|A0MZ66-5|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1;ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1	nc|ENSG00000187164|A0MZ66-2|SHTN1	nc|ENSG00000187164|A0MZ66-2|SHTN1	MULTI-MSMS	OvCa99_classI_Rep5	1	569.289306640625	2	568.283551	1134.55255	0.48661	0.00027653	3.0512	0.0017339	3.5378	0.0020105	568.2852488473493	45.948	1.2976	45.948	45.159	46.456	0					79	29	5	0	0	0	0.3094	1	3194	3194		79.713	20.931	1	3977000			3460	8391	2630	2640	4711	4711					-0.009344756231485007
CVSYSGMCL	9	Carbamidomethyl (C),Oxidation (M)	_C(Carbamidomethyl (C))VSYSGM(Oxidation (M))CL_	C(0.993)VSYSGMC(0.007)L	CVSYSGM(1)CL	C(21)VSYSGMC(-21)L	CVSYSGM(60)CL	0	1	1		tr|A0A7D6ZVE9|A0A7D6ZVE9_9CLOTU32familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14785PE=4SV=1	tr|A0A7D6ZVE9|A0A7D6ZVE9_9CLOTU32familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14785PE=4SV=1	tr|A0A7D6ZVE9|A0A7D6ZVE9_9CLOTU32familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14785PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	518.2006225585938	2	518.200838	1034.38712	1.035	0.00053633	-1.9503	-0.0010106	-0.91528	-0.0004743	518.1995740183111	93.574	0.57763	93.574	93.386	93.964	0					28	13	3	0	0	0	0.32337	1	10153	10153		60.294	6.9425	2	3097200			3461	35802	2631	2641	4712	4712	390	776			-0.12869450474295263
CVTLLLPFL	9	Unmodified	_CVTLLLPFL_					0	0	0			REV__ENST00000395136.6_2_1:70687096-70687432:+|nuORF	REV__ENST00000395136.6_2_1:70687096-70687432:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.8058166503906	2	509.803914	1017.59328	2.0238	0.0010317	-2.3362	-0.001191	-0.31239	-0.00015926	509.80258654056354	136.53	4.9049	134.99	133.61	138.51	-1.5437					290	101	5	0	0	0	0.61208	1	13574	13574		30.504	5.0535	1	173450	+		3462	25308	2632	2642	4713	4713					0.08518233758763927
CVTTGVLGLL	10	Unmodified	_CVTTGVLGLL_					0	0	0			REV__ENSG00000143198|ENST00000367889|MGST3	REV__ENSG00000143198|ENST00000367889|MGST3	MULTI-MSMS	OvCa9_classI_Rep3	3	488.2793884277344	2	488.280803	974.547053	-0.083416	-4.073E-05	-3.4211	-0.0016704	-3.5045	-0.0017112	488.2789678712929	104.17	1.3531	102.74	102.39	103.75	-1.4347					67	25	4	0	0	0	0.50656	1	7243	7243		53.351	0.41475	1	406870	+		3463	19822	2633	2643	4714	4714					0.05876168856673303
CVTTGVLGLL	10	Unmodified	_CVTTGVLGLL_					0	0	0			REV__ENSG00000143198|ENST00000367889|MGST3	REV__ENSG00000143198|ENST00000367889|MGST3	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.2803039550781	2	488.280803	974.547053	-0.14274	-6.9698E-05	-3.3321	-0.001627	-3.4748	-0.0016967	488.2790371348919	104.84	1.4704	102.72	102.32	103.79	-2.1192					62	28	3	0	0	0	0.52321	1	9522	9522		51.335	7.2187	1	366640	+		3464	19822	2633	2643	4715	4715					0.05876168856673303
CVVAGLPWYGK	11	Unmodified	_CVVAGLPWYGK_					0	0	0			REV__ENSG00000180720|ENST00000682254|CHRM4	REV__ENSG00000180720|ENST00000682254|CHRM4	MULTI-MSMS	OvCa9_classI_Rep3	3	596.815673828125	2	596.812802	1191.61105	3.1335	0.0018701	2.7756	0.0016565	5.9091	0.0035267	596.8143723057162	57.305	2.9299	54.154	53.228	56.158	-3.1504					108	83	2	0	0	0	0.72244	1	1708	1708		21.96	1.9631	1	40554	+		3465	22187	2634	2644	4716	4716					0.02290949013604404
CVVILGGFDLC	11	Unmodified	_CVVILGGFDLC_					0	0	0			REV__SLC16A2|p.R408L|1|0.08|ENSG00000147100|chrX:74529265-74529265|G/T|missense_variant	REV__SLC16A2|p.R408L|1|0.08|ENSG00000147100|chrX:74529265-74529265|G/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	569.7847290039062	2	569.785395	1137.55624	2.2518	0.001283	-3.7763	-0.0021517	-1.5245	-0.00086863	569.7831442113951	82.65	1.0582	82.65	82.02	83.078	0					41	18	3	0	0	0	0.40225	1	8578	8578		60.972	0.85368	1	1477900	+		3466	29366	2635	2645	4717	4717					-0.007038058492753407
CWGDKVTPI	9	Unmodified	_CWGDKVTPI_					0	0	0			REV__tr|A0A553SU28|A0A553SU28_NIACIIS3familytransposaseOS=NialliacirculansOX=1397GN=CEQ21_06205PE=4SV=1	REV__tr|A0A553SU28|A0A553SU28_NIACIIS3familytransposaseOS=NialliacirculansOX=1397GN=CEQ21_06205PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.80322265625	2	509.754953	1017.49535	-0.020997	-1.0703E-05	2.2274	0.0011354	2.2064	0.0011247	509.75648034948244	46.89	0.48492	46.89	46.809	47.294	0					18	10	2	0	0	0	0.027461	1	3368	3368		49.442	3.4896	1	237780	+		3467	30869	2636	2646	4718	4718					-0.012695748372152593
CWPPLFPLL	9	Unmodified	_CWPPLFPLL_					0	0	0		ENST00000540265.5_1_1:64120099-64125290:+|nuORF	ENST00000540265.5_1_1:64120099-64125290:+|nuORF	ENST00000540265.5_1_1:64120099-64125290:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.7608032226562	2	543.296256	1084.57796	1.9716	0.0010712	-3.9135	-0.0021262	-1.9419	-0.001055	543.7953950544169	85.471	0.45766	85.471	85.292	85.75	0					23	10	3	0	0	0	0.027462	1	8978	8978		39.021	1.21	1	234090			3468	13449	2637	2647	4719	4719					0.03905366961589607
CWWAAPRGA	9	Unmodified	_CWWAAPRGA_					0	0	0		ENST00000492795.1_1_3:67568732-67570988:-|nuORF	ENST00000492795.1_1_3:67568732-67570988:-|nuORF	ENST00000492795.1_1_3:67568732-67570988:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	509.2424011230469	2	509.239804	1016.46506	1.8597	0.00094703	0.0060402	3.0759E-06	1.8657	0.0009501	509.23977444196976	58.839	1.3289	55.713	55.114	56.442	-3.1264					48	32	2	0	0	0	0.71475	1	1851	1851		12.959	0.75233	1	16024			3469	12728	2638	2648	4720	4720					-0.042518887117466875
CYCLTVQRK	9	Unmodified	_CYCLTVQRK_					0	0	0		ENST00000505658.5_1_17:48828064-48828295:+|nuORF	ENST00000505658.5_1_17:48828064-48828295:+|nuORF	ENST00000505658.5_1_17:48828064-48828295:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	557.2802124023438	2	557.280812	1112.54707	2.2653	0.0012624	-3.3319	-0.0018568	-1.0666	-0.00059442	557.2788656125713	28.641	0.69712	25.931	25.759	26.456	-2.7097					25	14	2	0	0	0	0.6653	1	622	622		24.203	2.2429	1	46716			3470	12898	2639	2649	4721	4721					-0.00470154414983881
CYDKWTDGP	9	Unmodified	_CYDKWTDGP_					0	0	0			REV__ENSG00000119138|ENST00000377126|KLF9	REV__ENSG00000119138|ENST00000377126|KLF9	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.2886962890625	2	542.723849	1083.43315	-0.25581	-0.00013884	3.9286	0.0021321	3.6728	0.0019933	542.7259189361852	71.445	0.47749	71.445	71.191	71.668	0					17	11	2	0	0	0	0.027456	1	6937	6937		38.806	0	1	212810	+		3471	18427	2640	2650	4722	4722					-0.10523345976207565
CYFIIQLLL	9	Unmodified	_CYFIIQLLL_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-MSMS	OvCa9_classI_Rep3	3	563.3214111328125	2	563.322471	1124.63039	-6.0709	-0.0034199	-0.31249	-0.00017603	-6.3834	-0.0035959	563.322073230946	155.76	0.93549	154.68	154.4	155.34	-1.073					61	26	3	0	0	0	0.6959	1	13428	13428		19.36	0.25645	1	103840			3472	2892	2641	2651	4723	4723					0.07305905304565385
CYIIISKDTTA	11	Unmodified	_CYIIISKDTTA_					0	0	0		nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6;nc|ENSG00000158987|Q8TEU7-6|RAPGEF6	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	MULTI-MSMS	OvCa9_classI_Rep2	2	409.8805236816406	3	409.881168	1226.62167	-0.17802	-7.2968E-05	-1.5397	-0.00063109	-1.7177	-0.00070406	409.88034409875627	52.182	1.4338	49.369	48.996	50.43	-2.8129					84	28	4	0	0	0	0.67712	1	3459	3459		37.508	1.1905	1	479560			3473	5982	2642	2652	4724	4724					0.017428868774004513
CYKKALEI	8	Unmodified	_CYKKALEI_					0	0	0			REV__tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	REV__tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.2701416015625	2	484.267696	966.520839	-3.2281	-0.0015633	1.2902	0.00062482	-1.9378	-0.00093844	484.26839177681813	151.51	0.72472	150.08	149.82	150.55	-1.4344					23	15	2	0	0	0	0.75426	1	14972	14972		18.324	0	1	30776	+		3474	31603	2643	2653	4725	4725					0.036238996851921
CYKKALEI	8	Unmodified	_CYKKALEI_					0	0	0			REV__tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	REV__tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	484.267696	966.520839	-4.954	-0.0023991	4.976	0.0024097	0.022032	1.067E-05	484.26927920797436	151.12	0.59763	150.16	149.86	150.45	-0.95647	0.042606	0.0032892	NaN	18.324	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19079	+		3475	31603	2643	2653							0.036238996851921
CYKKALEI	8	Unmodified	_CYKKALEI_					0	0	0			REV__tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	REV__tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	484.267696	966.520839	-3.2281	-0.0015633	1.2902	0.00062482	-1.9378	-0.00093844	484.26839177681813	151.51	0.72472	150.08	149.82	150.55	-1.4344	-0.042606	-0.00028059	NaN	18.324	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30776	+		3476	31603	2643	2653							0.036238996851921
CYLKEQEDI	9	Unmodified	_CYLKEQEDI_					0	0	0		ENSG00000127720|ENST00000248306|METTL25;ENST00000552741.5_1_12:82868290-82872800:+|nuORF;ENST00000551645.1_1_12:82870329-82872800:+|nuORF;ENST00000548432.5_1_12:82832322-82872800:+|nuORF	ENSG00000127720|ENST00000248306|METTL25	ENSG00000127720|ENST00000248306|METTL25	MULTI-MSMS	OvCa99_classI_Rep5	1	570.7651977539062	2	570.765714	1139.51688	-0.68727	-0.00039227	-2.8463	-0.0016245	-3.5335	-0.0020168	570.7639375463239	41.921	5.4029	41.921	39.711	45.114	0					302	122	5	0	0	0	0.079296	1	2694	2694		102.77	6.5829	1	2972500			3477	3844	2644	2654	4726	4726					-0.04730234599173855
CYMKPKFGVT	10	Unmodified	_CYMKPKFGVT_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-MSMS	OvCa9_classI_Rep3	3	587.2955932617188	2	587.293388	1172.57222	-1.5752	-0.00092511	4.4659	0.0026228	2.8907	0.0016977	587.295888726077	118.54	0.74387	117.51	117.19	117.93	-1.0271					51	14	4	0	0	0	0.59703	1	8962	8962		42.396	7.2441	1	1066300	+		3478	21063	2645	2655	4727	4727					-0.007160996123957375
CYPSKHAHIR	10	Unmodified	_CYPSKHAHIR_					0	0	0			REV__ENSG00000166716|ENST00000560079|ZNF592	REV__ENSG00000166716|ENST00000560079|ZNF592	MULTI-MSMS	OvCa99_classI_Rep5	1	606.3063354492188	2	606.308749	1210.60295	0.77371	0.00046911	1.3369	0.00081059	2.1106	0.0012797	606.3080505081446	160.72	1.0018	160.72	160.21	161.21	0					35	19	3	0	0	0	0.6898	1	18843	18843		31.634	1.1306	1	70491	+		3479	21215	2646	2656	4728	4728					0.006068148168424159
CYVLFFRRL	9	Unmodified	_CYVLFFRRL_					0	0	0			REV__XRCC2|p.G113R|1|0.1|ENSG00000196584|chr7:152649148-152649148|C/G|missense_variant	REV__XRCC2|p.G113R|1|0.1|ENSG00000196584|chr7:152649148-152649148|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	608.834228515625	2	608.836611	1215.65867	-2.9862	-0.0018181	3.2378	0.0019713	0.25158	0.00015317	608.8384409530391	152.11	1.417	150.68	150.29	151.71	-1.435					87	30	4	0	0	0	0.6926	1	15019	15019		20.482	0.48506	1	285950	+		3480	32760	2647	2657	4729	4729					0.05946648004464805
CYYIFIVET	9	Unmodified	_CYYIFIVET_					0	0	0		ENSG00000168418|ENST00000308251|KCNG4	ENSG00000168418|ENST00000308251|KCNG4	ENSG00000168418|ENST00000308251|KCNG4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.8521728515625	2	575.778093	1149.54163	0.23529	0.00013548	3.2735	0.0018848	3.5088	0.0020203	575.7800913918483	89.7	1.1054	87.125	86.851	87.956	-2.575					29	21	2	0	0	0	0.027462	1	7718	7718		31.955	7.7521	1	61143			3481	6907	2648	2658	4730	4730					-0.027155547257962098
DAAALATLTPL	11	Unmodified	_DAAALATLTPL_					0	0	0			REV__ENST00000533762.5_3_1:26149812-26150235:+|nuORF	REV__ENST00000533762.5_3_1:26149812-26150235:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.7992553710938	2	528.800414	1055.58628	-0.0032197	-1.7026E-06	-2.7589	-0.0014589	-2.7621	-0.0014606	528.7987506023868	37.509	1.5397	34.616	34.392	35.932	-2.8925					53	30	3	0	0	0	0.69808	1	1382	1382		30.318	2.4355	1	302020	+		3482	27260	2649	2659	4731	4731					0.06070592411901998
DAAEAVVKI	9	Unmodified	_DAAEAVVKI_					0	0	0			REV__tr|A0A553SFR0|A0A553SFR0_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_09350PE=4SV=1	REV__tr|A0A553SFR0|A0A553SFR0_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_09350PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	458.2628173828125	2	458.260925	914.507297	0.038497	1.7642E-05	0.01519	6.9612E-06	0.053687	2.4603E-05	458.26078582598575	56.765	1.5975	56.765	56.22	57.818	0					69	37	4	0	0	0	0.2422	1	4748	4748		69.628	2.134	1	5095500	+		3483	29609	2650	2660	4732	4732					0.04662365177614447
DAAILWLR	8	Unmodified	_DAAILWLR_					0	0	0			REV__ENSG00000109771|ENST00000505916|LRP2BP	REV__ENSG00000109771|ENST00000505916|LRP2BP	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.7931213378906	2	479.279452	956.544351	-0.055975	-2.6828E-05	-3.6011	-0.0017259	-3.6571	-0.0017528	479.27754063972753	47.231	0.56944	47.231	46.938	47.508	0					19	12	3	0	0	0	0.028476	1	3408	3408		47.916	1.9636	1	98949	+		3484	17949	2651	2661	4733	4733					0.06434081514032641
DAAIQIVKEF	10	Unmodified	_DAAIQIVKEF_					0	0	0		tr|A0A553SGN5|A0A553SGN5_NIACIBifunctionalpurinebiosynthesisproteinPurHOS=NialliacirculansOX=1397GN=purHPE=3SV=1	tr|A0A553SGN5|A0A553SGN5_NIACIBifunctionalpurinebiosynthesisproteinPurHOS=NialliacirculansOX=1397GN=purHPE=3SV=1	tr|A0A553SGN5|A0A553SGN5_NIACIBifunctionalpurinebiosynthesisproteinPurHOS=NialliacirculansOX=1397GN=purHPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3182373046875	2	567.313689	1132.61282	2.0704	0.0011746	0.77426	0.00043925	2.8447	0.0016138	567.3139739099872	57.536	1.95	54.41	53.788	55.738	-3.1264					89	52	3	0	0	0	0.71173	1	1689	1689		29.17	3.596	1	66904			3485	33177	2652	2662	4734	4734					0.05182281303223135
DAAIREKRAKI	11	Unmodified	_DAAIREKRAKI_					0	0	0		ENSG00000111885|ENST00000368468|MAN1A1;nc|ENSG00000111885|P33908-2|MAN1A1	ENSG00000111885|ENST00000368468|MAN1A1	ENSG00000111885|ENST00000368468|MAN1A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	424.2591857910156	3	424.257849	1269.75172	-0.96426	-0.00040909	0.71015	0.00030129	-0.25411	-0.00010781	424.2581474428706	54.863	1.4795	51.615	51.336	52.816	-3.2474					82	28	4	0	0	0	0.71321	1	3424	3424		25.126	0.89417	1	508750			3486	2862	2653	2663	4735	4735					0.1276324399141231
DAAPARVTLGI	11	Unmodified	_DAAPARVTLGI_					0	0	0		GLRA2|p.A288T|1|0.4|ENSG00000101958|chrX:14609137-14609137|G/A|missense_variant	GLRA2|p.A288T|1|0.4|ENSG00000101958|chrX:14609137-14609137|G/A|missense_variant	GLRA2|p.A288T|1|0.4|ENSG00000101958|chrX:14609137-14609137|G/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.785400390625	2	542.31148	1082.60841	-0.25022	-0.0001357	-0.90649	-0.0004916	-1.1567	-0.0006273	542.3115975204144	89.863	1.7297	87.783	87.143	88.873	-2.0805					68	33	3	0	0	0	0.025377	1	5675	5675		47.657	4.0065	1	306700			3487	14342	2654	2664	4736	4736					0.07040816880339662
DAAPARVTLGI	11	Unmodified	_DAAPARVTLGI_					0	0	0		GLRA2|p.A288T|1|0.4|ENSG00000101958|chrX:14609137-14609137|G/A|missense_variant	GLRA2|p.A288T|1|0.4|ENSG00000101958|chrX:14609137-14609137|G/A|missense_variant	GLRA2|p.A288T|1|0.4|ENSG00000101958|chrX:14609137-14609137|G/A|missense_variant	MULTI-MATCH	OvCa99_classI_Rep5	1		2	542.31148	1082.60841	1.9	0.0010304	-1.4591	-0.00079126	0.44094	0.00023913	542.3113698105892	87.651	0.41628	87.651	87.378	87.794	0	-0.12186	8.7141E-05	NaN	47.657	10	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228020			3488	14342	2654	2664							0.07040816880339662
DAAPARVTLGI	11	Unmodified	_DAAPARVTLGI_					0	0	0		GLRA2|p.A288T|1|0.4|ENSG00000101958|chrX:14609137-14609137|G/A|missense_variant	GLRA2|p.A288T|1|0.4|ENSG00000101958|chrX:14609137-14609137|G/A|missense_variant	GLRA2|p.A288T|1|0.4|ENSG00000101958|chrX:14609137-14609137|G/A|missense_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	542.31148	1082.60841	-0.47605	-0.00025817	-0.34896	-0.00018925	-0.82501	-0.00044741	542.3117252739279	90.372	1.3795	87.797	87.399	88.779	-2.575	0.023786	0.0012912	NaN	47.657	43	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	248280			3489	14342	2654	2664							0.07040816880339662
DAAPGTVIAL	10	Unmodified	_DAAPGTVIAL_					0	0	0		nc|ENSG00000248383|Q9H158-2|PCDHAC1;ENSG00000248383|ENST00000253807|PCDHAC1;PCDHAC1|p.V624Ffs*13|1|0.09|ENSG00000248383|chr5:140928762-140928762|G/-|frameshift_variant	nc|ENSG00000248383|Q9H158-2|PCDHAC1	nc|ENSG00000248383|Q9H158-2|PCDHAC1	MULTI-MSMS	OvCa9_classI_Rep2	2	464.2598876953125	2	464.260925	926.507297	-0.14118	-6.5546E-05	-0.94032	-0.00043655	-1.0815	-0.0005021	464.2608902558396	78.313	1.8408	76.573	75.777	77.617	-1.7398					77	35	4	0	0	0	0.52321	1	6564	6564		51.335	0.14276	1	456250			3490	9406	2655	2665	4737	4737					0.04110365177609765
DAAPSTTLLL	10	Unmodified	_DAAPSTTLLL_					0	0	0		tr|A0A553SFX1|A0A553SFX1_NIACIMetal-dependenthydrolaseOS=NialliacirculansOX=1397GN=CEQ21_09665PE=4SV=1	tr|A0A553SFX1|A0A553SFX1_NIACIMetal-dependenthydrolaseOS=NialliacirculansOX=1397GN=CEQ21_09665PE=4SV=1	tr|A0A553SFX1|A0A553SFX1_NIACIMetal-dependenthydrolaseOS=NialliacirculansOX=1397GN=CEQ21_09665PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.27655029296875	2	501.279315	1000.54408	-0.99199	-0.00049726	1.4464	0.00072507	0.45445	0.0002278	501.27983483881206	79.984	0.43744	77.233	76.938	77.376	-2.7514					10	8	2	0	0	0	0.026635	1	6503	6503		39.253	15.73	1	27117			3491	33087	2656	2666	4738	4738					0.04382617003534506
DAARFQIGKR	10	Unmodified	_DAARFQIGKR_					0	0	0		ENSG00000278053|ENST00000617633|DDX52;DDX52|p.T105Dfs*14|1|0.23|ENSG00000278053|chr17:37633393-37633394|-/ATCT|frameshift_variant;DDX52|p.A104Gfs*20|1|0.11|ENSG00000278053|chr17:37633394-37633395|-/AAAAGTGAAGTAAAGAGGC|frameshift_variant	ENSG00000278053|ENST00000617633|DDX52	ENSG00000278053|ENST00000617633|DDX52	MULTI-MSMS	OvCa99_classI_Rep5	1	581.33349609375	2	581.327996	1160.64144	1.4901	0.00086621	3.0373	0.0017657	4.5274	0.0026319	581.3296796671664	128.92	1.3559	128.92	128.65	130.01	0					42	28	2	0	0	0	0.62299	1	14953	14953		39.253	0.49923	1	295250			3492	9588	2657	2667	4739	4739					0.06754443723048098
DAASKEGR	8	Unmodified	_DAASKEGR_					0	0	0		ENSG00000152292|ENST00000469800|SH2D6	ENSG00000152292|ENST00000469800|SH2D6	ENSG00000152292|ENST00000469800|SH2D6	MULTI-MSMS	OvCa99_classI_Rep5	1	417.20916748046875	2	417.209224	832.403895	0.1882	7.852E-05	-0.3306	-0.00013793	-0.1424	-5.941E-05	417.2094766810688	43.252	0.93877	43.252	43.057	43.995	0					63	21	5	0	0	0	0.50747	1	2844	2844		76.774	12.567	1	1883100			3493	5617	2658	2668	4740	4740					-0.01901122210176709
DAASSLTVDV	10	Unmodified	_DAASSLTVDV_					0	0	0		ENSG00000115806|ENST00000234160|GORASP2;nc|ENSG00000115806|Q9H8Y8-3|GORASP2;ENST00000442798.5_1_2:171793138-171822637:+|nuORF;nc|ENSG00000115806|Q9H8Y8-2|GORASP2	ENSG00000115806|ENST00000234160|GORASP2	ENSG00000115806|ENST00000234160|GORASP2	MULTI-MSMS	OvCa99_classI_Rep5	1	489.24267578125	2	489.242929	976.471305	-0.45949	-0.0002248	0.32924	0.00016108	-0.13025	-6.3723E-05	489.2428993829232	65.29	0.86954	65.29	65.034	65.904	0					55	21	4	0	0	0	0.16729	1	5982	5982		99.375	9.0051	1	6936700			3494	3127	2659	2669	4741	4741					-0.017871367898919743
DAATRYIAPTI	11	Unmodified	_DAATRYIAPTI_					0	0	0		ENSG00000108602|ENST00000225740|ALDH3A1;ENST00000479677.6_1_17:19641536-19646703:-|nuORF	ENSG00000108602|ENST00000225740|ALDH3A1	ENSG00000108602|ENST00000225740|ALDH3A1	MULTI-MSMS	OvCa99_classI_Rep5	1	596.32373046875	2	596.322045	1190.62954	1.1787	0.00070286	0.85706	0.00051108	2.0357	0.0012139	596.322429748079	155.89	3.621	155.89	155.07	158.69	0					175	72	3	0	0	0	0.5804	1	18320	18320		46.457	3.5925	1	345700			3495	2667	2660	2670	4742	4742					0.04184782189190628
DADISVVQLV	10	Unmodified	_DADISVVQLV_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8115844726562	2	529.790047	1057.56554	2.411	0.0012773	-0.0020628	-1.0929E-06	2.409	0.0012762	529.7901939614578	113.43	0.45642	113.43	113.2	113.66	0					17	11	2	0	0	0	0.026849	1	12936	12936		32.812	11.11	1	126890	+		3496	21079	2661	2671	4743	4743					0.03906002032226752
DADQLYIWL	9	Unmodified	_DADQLYIWL_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.8099975585938	2	568.784764	1135.55498	1.8176	0.0010338	2.3338	0.0013274	4.1513	0.0023612	569.2883372513742	125.69	0.32412	125.69	125.53	125.85	0					11	6	2	0	0	0	0.027462	1	14521	14521		37.159	2.9866	1	72509	+		3497	18991	2662	2672	4744	4744					-0.0073798062219339045
DADQWILS	8	Unmodified	_DADQWILS_					0	0	0			REV__tr|A0A553STT3|A0A553STT3_NIACIPTSglucosetransportersubunitIIAOS=NialliacirculansOX=1397GN=CEQ21_05665PE=4SV=1	REV__tr|A0A553STT3|A0A553STT3_NIACIPTSglucosetransportersubunitIIAOS=NialliacirculansOX=1397GN=CEQ21_05665PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.7790222167969	2	474.227082	946.439611	-0.75206	-0.00035665	-3.1614	-0.0014992	-3.9135	-0.0018559	474.2255938170646	34.137	0.66386	34.137	33.969	34.632	0					18	13	2	0	0	0	0.028476	1	1626	1626		47.657	0	1	218950	+		3498	31008	2663	2673	4745	4745					-0.0357508475318582
DADSAVVHED	10	Unmodified	_DADSAVVHED_					0	0	0			REV__nc|ENSG00000003147|Q05084-3|ICA1	REV__nc|ENSG00000003147|Q05084-3|ICA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.7369995117188	2	529.225268	1056.43598	0.87786	0.00046459	2.1963	0.0011623	3.0741	0.0016269	529.22589258913	132.51	0.61966	132.51	132.27	132.89	0					17	12	2	0	0	0	0.026802	1	15381	15381		26.693	1.1189	1	52637	+		3499	16370	2664	2674	4746	4746					-0.08997799317694444
DAEAQLVGL	9	Unmodified	_DAEAQLVGL_					0	0	0			REV__nc|ENSG00000203485|Q27J81-2|INF2	REV__nc|ENSG00000203485|Q27J81-2|INF2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	457.7565612792969	2	458.242732	914.470912	-1.7777	-0.00081461	1.4099	0.00064607	-0.36779	-0.00016854	458.24355383956606	50.192	0.62466	47.051	46.715	47.34	-3.1416					28	11	3	0	0	0	0.027392	1	2841	2841		73.975	2.679	1	44427	+		3500	23103	2665	2675	4747	4747					0.010254882809135779
DAEAQLVGL	9	Unmodified	_DAEAQLVGL_					0	0	0			REV__nc|ENSG00000203485|Q27J81-2|INF2	REV__nc|ENSG00000203485|Q27J81-2|INF2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	458.242732	914.470912	-0.38115	-0.00017466	0.87826	0.00040246	0.49711	0.0002278	458.2429590568946	50.151	0.3478	47.357	47.083	47.43	-2.794	0.15325	-0.00020142	NaN	73.975	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13570	+		3501	23103	2665	2675							0.010254882809135779
DAEKILKLI	9	Unmodified	_DAEKILKLI_					0	0	0		tr|A0A553SPC2|A0A553SPC2_NIACIUPF0358proteinCEQ21_26120OS=NialliacirculansOX=1397GN=CEQ21_26120PE=3SV=1	tr|A0A553SPC2|A0A553SPC2_NIACIUPF0358proteinCEQ21_26120OS=NialliacirculansOX=1397GN=CEQ21_26120PE=3SV=1	tr|A0A553SPC2|A0A553SPC2_NIACIUPF0358proteinCEQ21_26120OS=NialliacirculansOX=1397GN=CEQ21_26120PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.6450805664062	2	521.828975	1041.6434	1.2732	0.00066442	-0.26681	-0.00013923	1.0064	0.00052519	521.8286763528077	125.81	0.70201	125.81	125.62	126.32	0					20	14	2	0	0	0	0.027462	1	14584	14584		35.618	4.0885	1	80063			3502	34027	2666	2676	4748	4748					0.12424059688282796
DAELGIMFVQ	10	Unmodified	_DAELGIMFVQ_					0	0	0		ENST00000489895.5_1_3:52514938-52524786:+|nuORF	ENST00000489895.5_1_3:52514938-52524786:+|nuORF	ENST00000489895.5_1_3:52514938-52524786:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.8014526367188	2	561.778625	1121.5427	2.8313	0.0015906	-3.8354	-0.0021546	-1.0041	-0.00056407	561.7762147546279	113.13	0.59181	113.13	112.88	113.47	0					40	13	4	0	0	0	0.026849	1	12908	12908		32.812	0	1	1023400			3503	12688	2667	2677	4749	4749					-0.013213403568897775
DAESDQNLSL	10	Unmodified	_DAESDQNLSL_					0	0	0			REV__ENST00000512327.1_1_3:141105540-141105758:+|nuORF	REV__ENST00000512327.1_1_3:141105540-141105758:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.7974243164062	2	546.2462	1090.47785	-2.5455	-0.0013905	-0.1469	-8.0243E-05	-2.6924	-0.0014707	546.2459769887528	88.358	1.296	85.755	85.477	86.773	-2.6027					64	25	4	0	0	0	0.026493	1	7621	7621		70.816	7.5099	1	289360	+		3504	26968	2668	2678	4750	4750					-0.06377243629185614
DAFPKRIL	8	Unmodified	_DAFPKRIL_					0	0	0		nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	MULTI-MSMS	OvCa99_classI_Rep5	1	480.28857421875	2	480.287277	958.560001	1.7214	0.00082677	0.3966	0.00019048	2.118	0.0010173	480.287307244532	107.15	0.79898	107.15	106.85	107.65	0					50	18	4	0	0	0	0.53252	2	12095	12065;12095		74.255	2.3776	1	6266700			3505	858	2669	2679	4751;4752	4752					0.07906368031081001
DAFRRRRWRRR	11	Unmodified	_DAFRRRRWRRR_					0	0	0		DYSF|p.Y1602Pfs*2|1|0.24|ENSG00000135636|chr2:71660567-71660579|CTTACATCAAGAT/-|frameshift_variant;nc|ENSG00000135636|O75923-15|DYSF;nc|ENSG00000135636|O75923-3|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923-6|DYSF;nc|ENSG00000135636|O75923-12|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-4|DYSF;nc|ENSG00000135636|O75923-10|DYSF;nc|ENSG00000135636|O75923-2|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-7|DYSF;ENSG00000135636|ENST00000410020|DYSF	DYSF|p.Y1602Pfs*2|1|0.24|ENSG00000135636|chr2:71660567-71660579|CTTACATCAAGAT/-|frameshift_variant	DYSF|p.Y1602Pfs*2|1|0.24|ENSG00000135636|chr2:71660567-71660579|CTTACATCAAGAT/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7839965820312	3	544.317318	1629.93013	-0.23196	-0.00012626	-3.5161	-0.0019138	-3.748	-0.0020401	544.314270950043	30.243	0.24865	30.243	30.036	30.285	0					7	4	2	0	0	0	0.026401	1	1134	1134		12.433	6.112	1	16287			3506	770	2670	2680	4753	4753					0.14035771473641034
DAGAKAFAPI	10	Unmodified	_DAGAKAFAPI_					0	0	0			REV__tr|A0A553SFD7|A0A553SFD7_NIACIRibulose-phosphate3-epimeraseOS=NialliacirculansOX=1397GN=rpePE=3SV=1	REV__tr|A0A553SFD7|A0A553SFD7_NIACIRibulose-phosphate3-epimeraseOS=NialliacirculansOX=1397GN=rpePE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.7697448730469	2	480.761092	959.507631	-0.93583	-0.00044991	-2.6149	-0.0012571	-3.5507	-0.001707	480.75969924692055	55.53	0.353	52.235	52.008	52.361	-3.2944					11	6	2	0	0	0	0.026956	1	3483	3483		26.693	3.6504	1	49615	+		3507	29566	2671	2681	4754	4754					0.026257848974637454
DAGALGLVEQ	10	Unmodified	_DAGALGLVEQ_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.314697265625	2	486.753464	971.492375	-1.0172	-0.00049513	1.2968	0.00063122	0.2796	0.0001361	486.7539600814426	50.562	0.6916	47.768	47.531	48.222	-2.794					25	13	2	0	0	0	0.02658	1	3293	3293		64.207	21.811	1	73714	+		3508	28919	2672	2682	4755	4755					0.005488733096171927
DAGALRAALL	10	Unmodified	_DAGALRAALL_					0	0	0		ENST00000562988.5_1_16:2053670-2059708:-|nuORF	ENST00000562988.5_1_16:2053670-2059708:-|nuORF	ENST00000562988.5_1_16:2053670-2059708:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.3147277832031	2	485.787641	969.56073	-0.66664	-0.00032385	0.59191	0.00028754	-0.074727	-3.6302E-05	485.7876845947593	51.168	1.3078	47.995	47.62	48.927	-3.1734					58	25	3	0	0	0	0.026665	1	2967	2967		26.693	0	1	155810			3509	13781	2673	2683	4756	4756					0.07473162680128098
DAGASRYTY	9	Unmodified	_DAGASRYTY_					0	0	0			REV__TRIM42|p.W575R|1|0.09|ENSG00000155890|chr3:140688405-140688405|T/A|missense_variant	REV__TRIM42|p.W575R|1|0.09|ENSG00000155890|chr3:140688405-140688405|T/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.2925109863281	2	502.227613	1002.44067	-0.80485	-0.00040422	3.3211	0.0016679	2.5162	0.0012637	502.2294001621566	105.91	1.7182	103.89	103.05	104.77	-2.0161					38	33	2	0	0	0	0.027462	1	9724	9724		40.778	3.6191	1	13672	+		3510	32731	2674	2684	4757	4757					-0.06044870384278056
DAGASRYTY	9	Unmodified	_DAGASRYTY_					0	0	0			REV__TRIM42|p.W575R|1|0.09|ENSG00000155890|chr3:140688405-140688405|T/A|missense_variant	REV__TRIM42|p.W575R|1|0.09|ENSG00000155890|chr3:140688405-140688405|T/A|missense_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	502.227613	1002.44067	0.02621	1.3163E-05	2.8851	0.001449	2.9113	0.0014622	502.22903314655974	105.12	0.88399	103.77	103.47	104.35	-1.3482	-0.059119	-0.00022473	NaN	49.442	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23035	+		3511	32731	2674	2684							-0.06044870384278056
DAGDMFELVM	10	Unmodified	_DAGDMFELVM_					0	0	0			REV__CASK|p.F91L|1|0.18|ENSG00000147044|chrX:41787183-41787183|G/T|missense_variant	REV__CASK|p.F91L|1|0.18|ENSG00000147044|chrX:41787183-41787183|G/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.8248901367188	2	564.241018	1126.46748	2.1695	0.0012241	-0.28421	-0.00016036	1.8853	0.0010638	564.2405039932662	110.22	0.35909	110.22	110	110.35	0					7	5	2	0	0	0	0.026802	1	12515	12515		34.173	3.8548	1	81371	+		3512	15741	2675	2685	4758	4758					-0.09069265879611521
DAGECVICLEE	11	Unmodified	_DAGECVICLEE_					0	0	0		ENST00000579084.1_1_16:75129049-75138788:+|nuORF;ENST00000566244.1_1_16:75138617-75138788:+|nuORF;TYK2-ZNRF1|1|fusion;ENSG00000186187|ENST00000335325|ZNRF1;nc|ENSG00000186187|Q8ND25-2|ZNRF1	ENST00000579084.1_1_16:75129049-75138788:+|nuORF	ENST00000579084.1_1_16:75129049-75138788:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	590.8063354492188	2	590.746664	1179.47878	0.65611	0.0003876	-1.1038	-0.00065204	-0.44765	-0.00026445	590.7459984906226	160.12	0.59987	160.12	159.96	160.56	0					14	11	2	0	0	0	0.025528	1	18776	18776		35.152	0	1	24116			3513	8321	2676	2686	4759	4759					-0.10378488576156997
DAGEMVRSFV	10	Unmodified	_DAGEMVRSFV_					0	0	0		ENSG00000169126|ENST00000305242|ODAD2;nc|ENSG00000169126|Q5T2S8-2|ODAD2	ENSG00000169126|ENST00000305242|ODAD2	ENSG00000169126|ENST00000305242|ODAD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.8170776367188	2	555.766049	1109.51754	-0.02388	-1.3272E-05	0.43404	0.00024122	0.41016	0.00022795	555.7654519491999	69.271	0.98519	69.271	68.977	69.962	0					43	23	3	0	0	0	0.026956	1	6563	6563		26.693	0	1	279890			3514	6978	2677	2687	4760	4760					-0.032833951594511745
DAGGLCLYLF	10	Unmodified	_DAGGLCLYLF_					0	0	0			REV__OR2AE1|p.E111D|1|0.13|ENSG00000244623|chr7:99876701-99876701|T/A|missense_variant	REV__OR2AE1|p.E111D|1|0.13|ENSG00000244623|chr7:99876701-99876701|T/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.816162109375	2	536.26261	1070.51067	1.6968	0.00090994	-3.0577	-0.0016397	-1.3608	-0.00072977	536.2610400499345	116.91	0.40254	116.91	116.68	117.09	0					11	8	2	0	0	0	0.026871	1	13394	13394		21.96	0	1	129010	+		3515	29267	2678	2688	4761	4761					-0.021767080400422856
DAGGQQIGFL	10	Unmodified	_DAGGQQIGFL_					0	0	0		ENSG00000066084|ENST00000301180|DIP2B	ENSG00000066084|ENST00000301180|DIP2B	ENSG00000066084|ENST00000301180|DIP2B	MULTI-SECPEP	OvCa9_classI_Rep3	3	503.2768859863281	2	503.253631	1004.49271	-1.407	-0.0007081	-2.3495	-0.0011824	-3.7565	-0.0018905	503.25254660876016	83.448	0.23515	81.187	81.067	81.302	-2.261					8	4	2	0	0	0	0.026956	1	4764	4764		14.137	0	1	17712			3516	1343	2679	2689	4762	4762					-0.009357069705060894
DAGLECLFRA	10	Unmodified	_DAGLECLFRA_					0	0	0		ENST00000349155.6_3_12:115121317-115121416:-|nuORF	ENST00000349155.6_3_12:115121317-115121416:-|nuORF	ENST00000349155.6_3_12:115121317-115121416:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.2986450195312	2	547.768591	1093.52263	2.1135	0.0011577	-2.5514	-0.0013976	-0.43792	-0.00023988	547.7670229411626	82.514	0.47398	82.514	82.307	82.781	0					26	10	3	0	0	0	0.026734	1	8576	8576		47.657	9.8458	1	566220			3517	10643	2680	2690	4763	4763					-0.020390912968423436
DAGLGLWSVP	10	Unmodified	_DAGLGLWSVP_					0	0	0			REV__ENST00000593133.5_1_19:38085335-38085641:-|nuORF	REV__ENST00000593133.5_1_19:38085335-38085641:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7661437988281	2	507.766374	1013.5182	0.43978	0.0002233	-0.32354	-0.00016428	0.11624	5.9022E-05	507.76605298589374	131.19	1.6749	130.96	130.26	131.93	-0.22696					79	33	3	0	0	0	0.74374	1	12899	12899		25.574	0.12388	1	124560	+		3518	27959	2681	2691	4764	4764					0.01197767551900597
DAGLILDFE	9	Unmodified	_DAGLILDFE_					0	0	0			REV__ENSG00000144401|ENST00000411432|METTL21A	REV__ENSG00000144401|ENST00000411432|METTL21A	MULTI-MSMS	OvCa99_classI_Rep5	1	496.7533874511719	2	496.75039	991.486227	-0.33465	-0.00016624	1.4538	0.00072216	1.1191	0.00055592	496.7509489906515	56.315	1.3844	56.315	56.011	57.396	0					94	32	6	0	0	0	0.29717	1	4687	4687		63.306	7.8021	1	10672000	+		3519	19909	2682	2692	4765	4765					-0.009856449219000751
DAGLRVASAP	10	Unmodified	_DAGLRVASAP_					0	0	0			REV__tr|A0A553SHK3|A0A553SHK3_NIACIAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_13020PE=3SV=1	REV__tr|A0A553SHK3|A0A553SHK3_NIACIAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_13020PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.767333984375	2	478.761623	955.508694	-0.7243	-0.00034677	4.3189	0.0020677	3.5946	0.001721	478.76350088187746	45.817	0.99084	42.779	42.595	43.586	-3.0385					34	18	2	0	0	0	0.5675	1	2351	2351		45.972	6.7194	1	565240	+		3520	29809	2683	2693	4766	4766					0.029159992663721823
DAGPGPPLAA	10	Unmodified	_DAGPGPPLAA_					0	0	0			REV__ENST00000374980.2_1_20:32693350-32700101:-|nuORF	REV__ENST00000374980.2_1_20:32693350-32700101:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	433.2491760253906	2	433.224342	864.434132	0.50689	0.0002196	3.8587	0.0016717	4.3656	0.0018913	433.2260872942848	52.025	0.45341	48.851	48.676	49.129	-3.1734					10	8	2	0	0	0	0.026552	1	3087	3087		63.306	19.189	1	21154	+		3521	25075	2684	2694	4767	4767					-0.0035076354499778972
DAGPSIIILI	10	Unmodified	_DAGPSIIILI_					0	0	0			REV__ENSG00000187240|ENST00000375735|DYNC2H1	REV__ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.331787109375	2	506.307875	1010.6012	-1.3933	-0.00070546	1.4626	0.00074053	0.069272	3.5073E-05	506.308343010302	124.69	0.62109	123.3	122.87	123.49	-1.3908					14	11	2	0	0	0	0.026697	1	11794	11794		45.952	0	1	19230	+		3522	22636	2685	2695	4768	4768					0.09632084279917308
DAGQVGRVR	9	Unmodified	_DAGQVGRVR_					0	0	0			REV__tr|A0A553SUE0|A0A553SUE0_NIACIasparaginesynthase(glutamine-hydrolyzing)OS=NialliacirculansOX=1397GN=CEQ21_06805PE=3SV=1	REV__tr|A0A553SUE0|A0A553SUE0_NIACIasparaginesynthase(glutamine-hydrolyzing)OS=NialliacirculansOX=1397GN=CEQ21_06805PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.7931213378906	2	479.264865	956.515176	-0.059034	-2.8293E-05	3.0177	0.0014463	2.9586	0.001418	479.2661355309504	47.256	0.43712	47.256	46.985	47.422	0					14	9	2	0	0	0	0.027402	1	3408	3408		39.253	0	1	113440	+		3523	31068	2686	2696	4769	4769					0.035179372177594814
DAGSLVSLYPL	11	Unmodified	_DAGSLVSLYPL_					0	0	0			REV__ENSG00000179532|ENST00000254579|DNHD1	REV__ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.8023681640625	2	567.805697	1133.59684	2.143	0.0012168	3.6852	0.0020925	5.8282	0.0033093	567.8074466038189	91.989	0.42211	91.989	91.794	92.216	0					14	9	2	0	0	0	0.025638	1	9917	9917		30.318	5.7985	1	375650	+		3524	22127	2687	2697	4770	4770					0.03538575066318117
DAGSLVSLYPL	11	Unmodified	_DAGSLVSLYPL_					0	0	0			REV__ENSG00000179532|ENST00000254579|DNHD1	REV__ENSG00000179532|ENST00000254579|DNHD1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	567.805697	1133.59684	0.053784	3.0539E-05	4.3038	0.0024437	4.3576	0.0024743	568.3106367672287	94.845	0.95161	92.377	91.91	92.861	-2.4685	0.1936	0.00040829	NaN	23.523	20	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13827	+		3525	22127	2687	2697							0.03538575066318117
DAGWLYLL	8	Unmodified	_DAGWLYLL_					0	0	0			REV__ENST00000601575.5_1_19:39575751-39589112:+|nuORF	REV__ENST00000601575.5_1_19:39575751-39589112:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	475.6092529296875	2	475.752736	949.490919	0.22676	0.00010788	-3.8137	-0.0018144	-3.587	-0.0017065	475.7506525084801	81.805	0.65418	79.482	79.156	79.81	-2.3226					20	12	2	0	0	0	0.028476	1	4535	4535		13.775	5.544	1	37203	+		3526	28037	2688	2698	4771	4771					0.014152840115229992
DAGYKRTL	8	Unmodified	_DAGYKRTL_					0	0	0			REV__tr|A0A7D6ZTN7|A0A7D6ZTN7_9CLOTPhosphoglucosaminemutaseOS=ClostridiumintestinaleOX=36845GN=glmMPE=3SV=1	REV__tr|A0A7D6ZTN7|A0A7D6ZTN7_9CLOTPhosphoglucosaminemutaseOS=ClostridiumintestinaleOX=36845GN=glmMPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	461.7540588378906	2	462.250892	922.48723	0.1913	8.8431E-05	-3.5444	-0.0016384	-3.3531	-0.00155	462.24877877285746	68.333	0.638	64.842	64.574	65.212	-3.4902					16	12	2	0	0	0	0.028476	1	5039	5039		20.947	0	1	42788	+		3527	32206	2689	2699	4772	4772					0.022886142376819407
DAHADVGHLV	10	Unmodified	_DAHADVGHLV_					0	0	0		ENSG00000064687|ENST00000263094|ABCA7;nc|ENSG00000064687|Q8IZY2-2|ABCA7	ENSG00000064687|ENST00000263094|ABCA7	ENSG00000064687|ENST00000263094|ABCA7	MULTI-SECPEP	OvCa9_classI_Rep3	3	516.316162109375	2	517.256705	1032.49886	0.11849	6.1288E-05	-1.1904	-0.00061573	-1.0719	-0.00055444	517.2559609990938	115.77	0.49355	114.72	114.5	115	-1.0414					11	9	2	0	0	0	0.026871	1	8622	8622		15.642	0	1	10824			3528	1303	2690	2700	4773	4773					-0.0160918873900755
DAHVLSTSS	9	Unmodified	_DAHVLSTSS_					0	0	0			REV__POU3F4|p.M25Cfs*34|1|0.09|ENSG00000196767|chrX:83508397-83508397|A/-|frameshift_variant	REV__POU3F4|p.M25Cfs*34|1|0.09|ENSG00000196767|chrX:83508397-83508397|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	458.72222900390625	2	458.722164	915.429775	-0.0038614	-1.7713E-06	-1.9058	-0.00087423	-1.9097	-0.000876	458.72122717290074	131.87	0.99548	130.75	130.39	131.39	-1.1249					33	19	2	0	0	0	0.67509	1	10547	10547		23.042	1.3402	1	38698	+		3529	22862	2691	2701	4774	4774					-0.031322727585575194
DAHVLSTSS	9	Unmodified	_DAHVLSTSS_					0	0	0			REV__POU3F4|p.M25Cfs*34|1|0.09|ENSG00000196767|chrX:83508397-83508397|A/-|frameshift_variant	REV__POU3F4|p.M25Cfs*34|1|0.09|ENSG00000196767|chrX:83508397-83508397|A/-|frameshift_variant	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	458.722164	915.429775	-0.0038614	-1.7713E-06	-1.9058	-0.00087423	-1.9097	-0.000876	458.72122717290074	131.87	0.99548	130.75	130.39	131.39	-1.1249	-0.037513	0.0020243	NaN	23.042	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38698	+		3530	22862	2691	2701							-0.031322727585575194
DAIDESSVE	9	Unmodified	_DAIDESSVE_					0	0	0			REV__PIP4K2C|p.V213Rfs*20|1|0.08|ENSG00000166908|chr12:57599187-57599188|-/AGGATCTCACTGTGTTCCCCGGGCTG|frameshift_variant	REV__PIP4K2C|p.V213Rfs*20|1|0.08|ENSG00000166908|chr12:57599187-57599188|-/AGGATCTCACTGTGTTCCCCGGGCTG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.7127990722656	2	482.708919	963.403285	-1.1192	-0.00054025	2.0478	0.0009885	0.92862	0.00044825	482.7098639462165	34.531	0.281	34.531	34.351	34.632	0					9	5	2	0	0	0	0.027426	1	1670	1670		73.975	19.198	1	45158	+		3531	21235	2692	2702	4775	4775					-0.07988006440552908
DAIEDTESQ	9	Unmodified	_DAIEDTESQ_					0	0	0		ENST00000528369.5_1_11:17809634-17961065:-|nuORF;ENSG00000129158|ENST00000265965|SERGEF	ENST00000528369.5_1_11:17809634-17961065:-|nuORF	ENST00000528369.5_1_11:17809634-17961065:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.2586975097656	2	504.211826	1006.4091	-0.46468	-0.0002343	1.0634	0.00053616	0.59868	0.00030186	504.21201692660355	66.322	0.72064	66.322	66.096	66.816	0					23	17	2	0	0	0	0.027462	1	6212	6212		32.812	9.2897	1	132280			3532	3922	2693	2703	4776	4776					-0.09384907928892972
DAIKQWVLS	9	Unmodified	_DAIKQWVLS_					0	0	0		tr|A0A553STJ4|A0A553STJ4_NIACIPotassium-transportingATPaseATP-bindingsubunitOS=NialliacirculansOX=1397GN=kdpBPE=3SV=1	tr|A0A553STJ4|A0A553STJ4_NIACIPotassium-transportingATPaseATP-bindingsubunitOS=NialliacirculansOX=1397GN=kdpBPE=3SV=1	tr|A0A553STJ4|A0A553STJ4_NIACIPotassium-transportingATPaseATP-bindingsubunitOS=NialliacirculansOX=1397GN=kdpBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.3040771484375	2	530.295299	1058.57605	-1.55	-0.00082196	-1.1468	-0.00060812	-2.6968	-0.0014301	530.2933528296106	51.205	0.75083	48.031	47.721	48.472	-3.1734					19	14	2	0	0	0	0.027353	1	3034	3034		82.241	4.9229	1	50814			3533	34495	2694	2704	4777	4777					0.049100294773325004
DAINFMFRQK	10	Unmodified	_DAINFMFRQK_					0	0	0			REV__ENSG00000111642|ENST00000544040|CHD4	REV__ENSG00000111642|ENST00000544040|CHD4	MULTI-SECPEP	OvCa9_classI_Rep2	2	424.2576904296875	3	423.885135	1268.63358	-1.0588	-0.00044881	-0.28103	-0.00011913	-1.3398	-0.00056793	423.8843393188293	54.263	0.24812	51.449	51.375	51.623	-2.8139					7	4	2	0	0	0	0.027089	1	3726	3726		31.634	16.301	1	9496	+		3534	18041	2695	2705	4778	4778					0.01000548411229829
DAIPIKLRIL	10	Unmodified	_DAIPIKLRIL_					0	0	0		tr|A0A7D7AAT9|A0A7D7AAT9_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12715PE=4SV=1	tr|A0A7D7AAT9|A0A7D7AAT9_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12715PE=4SV=1	tr|A0A7D7AAT9|A0A7D7AAT9_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12715PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	576.841064453125	2	576.379166	1150.74378	0.50522	0.0002912	-1.1128	-0.0006414	-0.60758	-0.0003502	576.3783573953093	97.246	0.91374	94.852	94.643	95.557	-2.3944					35	17	3	0	0	0	0.026931	1	8691	8691		23.523	0	1	63727			3535	36209	2696	2706	4779	4779					0.174437167419228
DAIPIKLRIL	10	Unmodified	_DAIPIKLRIL_					0	0	0		tr|A0A7D7AAT9|A0A7D7AAT9_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12715PE=4SV=1	tr|A0A7D7AAT9|A0A7D7AAT9_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12715PE=4SV=1	tr|A0A7D7AAT9|A0A7D7AAT9_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12715PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	576.379166	1150.74378	-1.5211	-0.00087671	1.1886	0.0006851	-0.33243	-0.00019161	576.379684448339	96.583	1.1313	94.754	94.521	95.652	-1.8286	-0.048757	0.0011474	NaN	23.523	45	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67435			3536	36209	2696	2706							0.174437167419228
DAKASSSFL	9	Unmodified	_DAKASSSFL_					0	0	0			REV__nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	REV__nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-MSMS	OvCa99_classI_Rep5	1	463.23590087890625	2	463.234907	924.455261	0.29071	0.00013467	-0.71544	-0.00033142	-0.42473	-0.00019675	463.23463520466345	57.938	0.67194	57.938	57.65	58.322	0					33	15	3	0	0	0	0.16524	1	4903	4903		82.305	0.064519	1	933890	+		3537	20102	2697	2707	4780	4780					-0.009987982361280956
DAKEKLKFI	9	Unmodified	_DAKEKLKFI_					0	0	0			REV__nc|ENSG00000164221|Q8NEF3|CCDC112	REV__nc|ENSG00000164221|Q8NEF3|CCDC112	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.7545166015625	2	546.326599	1090.63865	-2.3395	-0.0012781	0.047439	2.5917E-05	-2.292	-0.0012522	546.3265181012131	103.87	0.98315	103.87	103.55	104.54	0					63	22	4	0	0	0	0.027447	1	11586	11586		39.253	7.723	1	4709700	+		3538	20961	2698	2708	4781	4781					0.09695175545516577
DAKNYLVID	9	Unmodified	_DAKNYLVID_					0	0	0			REV__ENSG00000129749|ENST00000250699|CHRNA10	REV__ENSG00000129749|ENST00000250699|CHRNA10	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.80517578125	2	525.776939	1049.53933	0.47818	0.00025142	-3.2698	-0.0017192	-2.7916	-0.0014678	526.2760379139928	92.293	0.47475	91.125	90.971	91.446	-1.168					12	8	2	0	0	0	0.027304	1	8193	8193		58.23	0	1	16506	+		3539	18910	2699	2709	4782	4782					0.016537328607682866
DAKTIDLLNN	10	Unmodified	_DAKTIDLLNN_					0	0	0			REV__tr|A0A7D6VTW2|A0A7D6VTW2_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23115PE=4SV=1	REV__tr|A0A7D6VTW2|A0A7D6VTW2_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23115PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	557.8456420898438	2	558.798403	1115.58225	-0.77103	-0.00043085	1.0776	0.00060215	0.30655	0.0001713	558.7989667949454	88.777	0.97523	86.646	86.214	87.189	-2.1309					32	19	2	0	0	0	0.026931	1	5378	5378		37.812	7.3079	1	41210	+		3540	31635	2700	2710	4783	4783					0.029085029181942446
DALAKSLRLLE	11	Unmodified	_DALAKSLRLLE_					0	0	0			REV__nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	REV__nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	MULTI-SECPEP	OvCa9_classI_Rep2	2	409.24627685546875	3	410.246839	1227.71869	0.52603	0.0002158	-2.2424	-0.00091992	-1.7163	-0.00070412	410.244936926077	59.813	0.30385	57.043	56.882	57.186	-2.7702					7	5	2	0	0	0	0.025912	1	4381	4381		20.315	12.51	1	20842	+		3541	21403	2701	2711	4784	4784					0.11393617148701196
DALEEAVAL	9	Unmodified	_DALEEAVAL_					0	0	0			REV__ENST00000592573.1_1_19:55556444-55559456:-|nuORF	REV__ENST00000592573.1_1_19:55556444-55559456:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.76806640625	2	465.742565	929.470577	-1.2704	-0.0005917	2.4574	0.0011445	1.1869	0.0005528	465.74355915251243	48.791	0.7306	45.683	45.451	46.181	-3.1077					23	13	2	0	0	0	0.027441	1	2693	2693		45.952	7.1458	1	96063	+		3542	20658	2702	2712	4785	4785					0.003020685610408691
DALEEAVAL	9	Unmodified	_DALEEAVAL_					0	0	0			REV__ENST00000592573.1_1_19:55556444-55559456:-|nuORF	REV__ENST00000592573.1_1_19:55556444-55559456:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	465.742565	929.470577	-0.84286	-0.00039255	2.0151	0.0009385	1.1722	0.00054594	465.7435522652904	48.435	0.64972	45.675	45.428	46.078	-2.7603	-0.0039682	-0.00023363	NaN	45.952	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24892	+		3543	20658	2702	2712							0.003020685610408691
DALEVQVKKL	10	Unmodified	_DALEVQVKKL_					0	0	0		ENSG00000132478|ENST00000589666|UNK	ENSG00000132478|ENST00000589666|UNK	ENSG00000132478|ENST00000589666|UNK	MULTI-MSMS	OvCa9_classI_Rep4_	4	571.8463134765625	2	571.842613	1141.67067	0.069187	3.9564E-05	2.9413	0.001682	3.0105	0.0017215	571.8440771175536	122.38	1.1992	121.01	120.65	121.85	-1.3666					56	23	4	0	0	0	0.53807	1	11539	11539		49.536	1.5765	1	104550			3544	4141	2703	2713	4786	4786					0.10550543228669085
DALFPSVAPQ	10	Unmodified	_DALFPSVAPQ_					0	0	0		ENSG00000162426|ENST00000471889|SLC45A1	ENSG00000162426|ENST00000471889|SLC45A1	ENSG00000162426|ENST00000471889|SLC45A1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.7755737304688	2	522.771657	1043.52876	-0.3688	-0.0001928	-2.8768	-0.0015039	-3.2456	-0.0016967	522.7695987707345	75.239	0.91715	72.008	71.385	72.302	-3.2308					33	18	3	0	0	0	0.026681	1	5855	5855		36.447	8.3653	1	127470			3545	6181	2704	2714	4787	4787					0.008737502063240754
DALFPSVAPQ	10	Unmodified	_DALFPSVAPQ_					0	0	0		ENSG00000162426|ENST00000471889|SLC45A1	ENSG00000162426|ENST00000471889|SLC45A1	ENSG00000162426|ENST00000471889|SLC45A1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	522.771657	1043.52876	-0.18876	-9.868E-05	-3.1656	-0.0016549	-3.3544	-0.0017536	522.769575640204	71.941	0.74306	71.941	71.548	72.291	0	-0.14673	-0.00017382	NaN	36.447	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1480300			3546	6181	2704	2714							0.008737502063240754
DALFPSVAPQ	10	Unmodified	_DALFPSVAPQ_					0	0	0		ENSG00000162426|ENST00000471889|SLC45A1	ENSG00000162426|ENST00000471889|SLC45A1	ENSG00000162426|ENST00000471889|SLC45A1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	522.771657	1043.52876	-0.162	-8.469E-05	-2.9613	-0.0015481	-3.1233	-0.0016328	522.7697669966457	74.285	0.99857	72.314	71.745	72.744	-1.9711	0.22619	3.9835E-05	NaN	36.447	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34568			3547	6181	2704	2714							0.008737502063240754
DALISESDQL	10	Unmodified	_DALISESDQL_					0	0	0			REV__ENSG00000197872|ENST00000381323|CYRIA	REV__ENSG00000197872|ENST00000381323|CYRIA	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.80615234375	2	545.766768	1089.51898	-1.3662	-0.00074563	-0.74094	-0.00040438	-2.1071	-0.00115	545.7662806874027	104.44	0.33855	104.44	104.28	104.62	0					12	7	2	0	0	0	0.026688	1	11705	11705		49.442	8.6634	1	267600	+		3548	22959	2705	2715	4788	4788					-0.022194825897031478
DALLAELRAR	10	Unmodified	_DALLAELRAR_					0	0	0		ENSG00000176022|ENST00000379198|B3GALT6	ENSG00000176022|ENST00000379198|B3GALT6	ENSG00000176022|ENST00000379198|B3GALT6	MULTI-MSMS	OvCa9_classI_Rep2	2	564.3328857421875	2	564.330205	1126.64586	-1.0056	-0.0005675	4.0415	0.0022808	3.0359	0.0017133	564.3321744807142	117.4	1.5874	117.27	116.91	118.5	-0.12869					87	31	4	0	0	0	0.59317	1	11259	11259		42.864	0.46813	1	307740			3549	7576	2706	2716	4789	4789					0.0875990814593024
DALLRSVLS	9	Unmodified	_DALLRSVLS_					0	0	0			REV__ENSG00000064687|ENST00000263094|ABCA7	REV__ENSG00000064687|ENST00000263094|ABCA7	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.3041076660156	2	487.287474	972.560395	1.0295	0.00050166	2.2868	0.0011143	3.3163	0.001616	487.28848772590214	125.91	0.61983	124.85	124.47	125.09	-1.0519					17	11	2	0	0	0	0.027448	1	9828	9828		35.618	18.253	1	13035	+		3550	16774	2707	2717	4790	4790					0.0730174296027144
DALLTVALRK	10	Unmodified	_DALLTVALRK_					0	0	0		nc|ENSG00000079337|O95398-2|RAPGEF3;ENST00000479866.5_1_12:48143124-48152369:-|nuORF;ENST00000482843.5_1_12:48142600-48152369:-|nuORF;RAPGEF3|p.R534Hfs*47|1|0.07|ENSG00000079337|chr12:47744064-47744065|-/AAGACCAGCTACTCTCACTGTGT|frameshift_variant;nc|ENSG00000079337|O95398-3|RAPGEF3;ENSG00000079337|ENST00000449771|RAPGEF3	nc|ENSG00000079337|O95398-2|RAPGEF3	nc|ENSG00000079337|O95398-2|RAPGEF3	MULTI-SECPEP	OvCa9_classI_Rep2	2	549.8123779296875	2	550.345323	1098.67609	1.1124	0.0006122	1.563	0.0008602	2.6754	0.0014724	550.8474841551481	125.91	0.29706	125.68	125.45	125.75	-0.2359					6	5	2	0	0	0	0.027145	1	12259	12259		24.519	5.1592	1	5461.4			3551	14897	2708	2718	4791	4791					0.1307026681113257
DALPLLKI	8	Unmodified	_DALPLLKI_					0	0	0		ENSG00000152213|ENST00000282026|ARL11	ENSG00000152213|ENST00000282026|ARL11	ENSG00000152213|ENST00000282026|ARL11	MULTI-MSMS	OvCa99_classI_Rep5	1	441.78924560546875	2	441.786579	881.558604	0.54173	0.00023933	2.3389	0.0010333	2.8806	0.0012726	441.78740694443155	61.545	0.71274	61.545	61.071	61.784	0					57	16	4	0	0	0	0.75661	1	5423	5423		19.36	0	1	2780300			3552	5610	2709	2719	4792	4792					0.11308733942325944
DALRISAEV	9	Unmodified	_DALRISAEV_					0	0	0		tr|A0A7D6VSC3|A0A7D6VSC3_9CLOTEnolaseOS=ClostridiumintestinaleOX=36845GN=enoPE=3SV=1	tr|A0A7D6VSC3|A0A7D6VSC3_9CLOTEnolaseOS=ClostridiumintestinaleOX=36845GN=enoPE=3SV=1	tr|A0A7D6VSC3|A0A7D6VSC3_9CLOTEnolaseOS=ClostridiumintestinaleOX=36845GN=enoPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.3041076660156	2	487.269281	972.52401	0.98518	0.00048005	-1.6571	-0.00080744	-0.67189	-0.00032739	487.26849873484974	125.98	0.88223	124.92	124.62	125.51	-1.0583					26	16	2	0	0	0	0.027402	1	9828	9828		47.657	3.2801	1	35221			3553	35013	2710	2720	4793	4793					0.03664866063559202
DALRVLSKL	9	Unmodified	_DALRVLSKL_					0	0	0		nc|ENSG00000126246|Q9H665-2|IGFLR1;ENSG00000126246|ENST00000246532|IGFLR1	nc|ENSG00000126246|Q9H665-2|IGFLR1	nc|ENSG00000126246|Q9H665-2|IGFLR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.7838439941406	2	507.818941	1013.62333	-0.97634	-0.00049581	-1.1866	-0.0006026	-2.163	-0.0010984	507.8183006576253	82.052	0.97071	79.369	79.251	80.222	-2.6829					41	19	3	0	0	0	0.027358	1	6759	6759		75.043	27.386	1	202980			3554	3773	2711	2721	4794	4794					0.1170630874833023
DALTSSIQRA	10	Unmodified	_DALTSSIQRA_					0	0	0			REV__ENST00000369053.3_1_1:150459926-150461710:+|nuORF	REV__ENST00000369053.3_1_1:150459926-150461710:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	530.3080444335938	2	531.28292	1060.55129	-0.017102	-9.0859E-06	1.4338	0.00076176	1.4167	0.00075267	531.2841060138513	118.34	0.44733	117.31	117.18	117.63	-1.0324					13	8	2	0	0	0	0.026891	1	8933	8933		39.253	3.6345	1	24439	+		3555	19836	2712	2722	4795	4795					0.02343349603961542
DALVFIIGL	9	Unmodified	_DALVFIIGL_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1;DOCK1-NPS|1|fusion	nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.26776123046875	2	480.791861	959.569169	-0.56016	-0.00026932	-3.939	-0.0018939	-4.4992	-0.0021632	480.78984965915924	52.604	1.208	49.396	49.196	50.404	-3.208					56	23	4	0	0	0	0.027415	1	3173	3173		42.474	0	1	322300			3556	5517	2713	2723	4796	4796					0.087767165967648
DAMVLCPVI	9	Unmodified	_DAMVLCPVI_					0	0	0		ENST00000474865.6_1_X:1561033-1571742:-|nuORF	ENST00000474865.6_1_X:1561033-1571742:-|nuORF	ENST00000474865.6_1_X:1561033-1571742:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.26776123046875	2	480.748282	959.48201	-0.38291	-0.00018408	4.4383	0.0021337	4.0553	0.0019496	480.7497649857454	52.497	0.91164	49.289	48.641	49.553	-3.208					27	17	2	0	0	0	0.027405	1	3173	3173		44.531	0	1	49407			3557	12439	2714	2724	4797	4797					0.000648510591872764
DANIGVWEP	9	Unmodified	_DANIGVWEP_					0	0	0			REV__ENSG00000174951|ENST00000645652|FUT1	REV__ENSG00000174951|ENST00000645652|FUT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.7945556640625	2	500.740357	999.46616	1.0524	0.00052697	0.52143	0.0002611	1.5738	0.00078807	500.7409751214855	83.485	0.33575	83.485	83.293	83.629	0					13	7	2	0	0	0	0.027353	1	8692	8692		62.107	16.135	1	329280	+		3558	21863	2715	2725	4798	4798					-0.03359395861855319
DANQTYLV	8	Unmodified	_DANQTYLV_					0	0	0		ENSG00000113194|ENST00000261942|FAF2;ENST00000513627.1_1_5:175921035-175923719:+|nuORF	ENSG00000113194|ENST00000261942|FAF2;ENST00000513627.1_1_5:175921035-175923719:+|nuORF	ENSG00000113194|ENST00000261942|FAF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.226806640625	2	462.227082	922.439611	0.30189	0.00013954	-1.9794	-0.00091493	-1.6775	-0.00077539	462.2261682280489	140.61	1.0811	139.11	138.81	139.89	-1.4952					45	20	3	0	0	0	0.74229	1	13723	13723		30.504	0	1	115030			3559	2952;13018	2716	2726	4799	4799					-0.02471084753199193
DANVFITL	8	Unmodified	_DANVFITL_					0	0	0		nc|ENSG00000167210|Q8IVV2-3|LOXHD1;nc|ENSG00000167210|Q8IVV2|LOXHD1;ENSG00000167210|ENST00000642948|LOXHD1;ENST00000335730.6_1_18:44089558-44181581:-|nuORF	nc|ENSG00000167210|Q8IVV2-3|LOXHD1	nc|ENSG00000167210|Q8IVV2-3|LOXHD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	446.7421569824219	2	446.742368	891.470183	4.1893	0.0018715	-4.3797	-0.0019566	-0.19039	-8.5056E-05	446.7403710784654	132.3	1.262	130.8	130.27	131.53	-1.5015					37	24	2	0	0	0	0.72896	1	12736	12736		37.159	3.6435	1	53772			3560	6773	2717	2727	4800	4800					0.020106936318711632
DANVFITL	8	Unmodified	_DANVFITL_					0	0	0		nc|ENSG00000167210|Q8IVV2-3|LOXHD1;nc|ENSG00000167210|Q8IVV2|LOXHD1;ENSG00000167210|ENST00000642948|LOXHD1;ENST00000335730.6_1_18:44089558-44181581:-|nuORF	nc|ENSG00000167210|Q8IVV2-3|LOXHD1	nc|ENSG00000167210|Q8IVV2-3|LOXHD1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	446.742368	891.470183	0.20932	9.3512E-05	-0.44603	-0.00019926	-0.23671	-0.00010575	446.7421657478472	131.89	0.8963	130.76	130.44	131.34	-1.1249	-0.02035	0.0014667	NaN	37.159	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36118			3561	6773	2717	2727							0.020106936318711632
DAPLATSTRSL	11	Unmodified	_DAPLATSTRSL_					0	0	0			REV__ENSG00000145794|ENST00000503335|MEGF10	REV__ENSG00000145794|ENST00000503335|MEGF10	MULTI-SECPEP	OvCa9_classI_Rep3	3	566.3108520507812	2	566.303852	1130.59315	0.23337	0.00013216	2.5383	0.0014375	2.7717	0.0015696	566.3049873275298	105.52	0.98917	104.17	103.78	104.77	-1.3482					39	18	4	0	0	0	0.025344	1	7459	7459		58.23	5.2932	1	175770	+		3562	19984	2718	2728	4801	4801					0.033079052924676944
DAPLATSTRSL	11	Unmodified	_DAPLATSTRSL_					0	0	0			REV__ENSG00000145794|ENST00000503335|MEGF10	REV__ENSG00000145794|ENST00000503335|MEGF10	MULTI-MATCH	OvCa9_classI_Rep2	2		2	566.303852	1130.59315	-0.59472	-0.00033679	3.3586	0.001902	2.7639	0.0015652	566.3059412720781	104.72	0.74004	104.14	103.92	104.66	-0.57639	-0.024835	0.00055613	NaN	58.23	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146200	+		3563	19984	2718	2728							0.033079052924676944
DAPLATSTRSL	11	Unmodified	_DAPLATSTRSL_					0	0	0			REV__ENSG00000145794|ENST00000503335|MEGF10	REV__ENSG00000145794|ENST00000503335|MEGF10	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	566.303852	1130.59315	0.27764	0.00015723	2.731	0.0015466	3.0086	0.0017038	566.3052437129178	106.21	0.66189	104.19	103.79	104.46	-2.0161	0.021084	-0.00015473	NaN	58.23	35	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169860	+		3564	19984	2718	2728							0.033079052924676944
DAPLSVQKRLL	11	Unmodified	_DAPLSVQKRLL_					0	0	0		ENST00000239223.3_1_5:172197224-172198187:-|nuORF	ENST00000239223.3_1_5:172197224-172198187:-|nuORF	ENST00000239223.3_1_5:172197224-172198187:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	620.376953125	2	620.374612	1238.73467	-1.3135	-0.00081483	0.88013	0.00054601	-0.43332	-0.00026882	620.3750432207888	70.189	0.71912	70.189	69.922	70.641	0					52	17	5	0	0	0	0.41656	1	6701	6701		59.931	5.2084	1	7903800			3565	9754	2719	2729	4802	4802					0.12485323385612901
DAPLSVQKRLL	11	Unmodified	_DAPLSVQKRLL_					0	0	0		ENST00000239223.3_1_5:172197224-172198187:-|nuORF	ENST00000239223.3_1_5:172197224-172198187:-|nuORF	ENST00000239223.3_1_5:172197224-172198187:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	620.374612	1238.73467	-1.0371	-0.00064341	0.46165	0.0002864	-0.57547	-0.00035701	620.3747520950056	73.389	0.86755	69.993	69.736	70.604	-3.3961	-0.097763	-0.00021997	NaN	59.931	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188650			3566	9754	2719	2729							0.12485323385612901
DAPSSELASR	10	Unmodified	_DAPSSELASR_					0	0	0			REV__nc|ENSG00000110680|P06881|CALCA	REV__nc|ENSG00000110680|P06881|CALCA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.3036499023438	2	516.751453	1031.48835	-0.64792	-0.00033481	2.4554	0.0012689	1.8075	0.00093404	516.7526563493199	62.926	0.87043	59.468	59.111	59.981	-3.4577					21	15	2	0	0	0	0.026551	1	4364	4364		79.713	7.8351	1	157710	+		3567	17994	2720	2730	4803	4803					-0.026132161840678236
DAPSYFSLD	9	Unmodified	_DAPSYFSLD_					0	0	0		ENSG00000280165|ENST00000409204|PCDH20	ENSG00000280165|ENST00000409204|PCDH20	ENSG00000280165|ENST00000409204|PCDH20	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.8128662109375	2	507.724372	1013.43419	-1.0334	-0.0005247	1.2427	0.00063095	0.20927	0.00010625	507.72318396748227	73.786	0.14516	70.39	70.317	70.462	-3.3961					4	2	2	0	0	0	0.027462	1	5732	5732		37.159	0	1	10134			3568	9601	2721	2731	4804	4804					-0.07198808335658669
DARDRLHL	8	Unmodified	_DARDRLHL_					0	0	0			REV__ENST00000463471.6_1_1:2490234-2490570:+|nuORF	REV__ENST00000463471.6_1_1:2490234-2490570:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.78314208984375	2	498.27269	994.530826	0.15133	7.5405E-05	-1.8429	-0.00091829	-1.6916	-0.00084289	498.2725780178049	98.142	0.85543	95.764	95.166	96.022	-2.3786					25	16	3	0	0	0	0.028476	1	8676	8676		35.618	11.416	1	27344	+		3569	25856	2722	2732	4805	4805					0.03334223734805164
DARDRLHL	8	Unmodified	_DARDRLHL_					0	0	0			REV__ENST00000463471.6_1_1:2490234-2490570:+|nuORF	REV__ENST00000463471.6_1_1:2490234-2490570:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	498.27269	994.530826	-0.73287	-0.00036517	-0.24295	-0.00012106	-0.97582	-0.00048622	498.27331439043223	97.551	0.7966	95.792	95.62	96.417	-1.7595	0.013986	0.0007089	NaN	35.618	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21041	+		3570	25856	2722	2732							0.03334223734805164
DARFAGAF	8	Unmodified	_DARFAGAF_					0	0	0		WDR13-TUBGCP2|1|fusion	WDR13-TUBGCP2|1|fusion	WDR13-TUBGCP2|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	427.5244140625	2	427.711402	853.408252	0.053898	2.3053E-05	-0.89178	-0.00038142	-0.83788	-0.00035837	427.7106902059946	60.468	0.24951	60.468	60.352	60.602	0					7	5	2	0	0	0	0.028476	1	5272	5272		26.796	13.837	1	54403			3571	36303	2723	2733	4806	4806					-0.024316129966223343
DARHLAAIL	9	Unmodified	_DARHLAAIL_					0	0	0			REV__tr|A0A553SJY7|A0A553SJY7_NIACICelldivisionproteinFtsAOS=NialliacirculansOX=1397GN=CEQ21_17585PE=4SV=1	REV__tr|A0A553SJY7|A0A553SJY7_NIACICelldivisionproteinFtsAOS=NialliacirculansOX=1397GN=CEQ21_17585PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	490.291259765625	2	490.287808	978.561064	1.7601	0.00086294	4.2153	0.0020667	5.9753	0.0029296	490.28970370352715	128.67	0.98233	128.67	128.42	129.4	0					50	20	4	0	0	0	0.42676	1	14922	14922		49.442	0.23076	1	878810	+		3572	30057	2724	2734	4807	4807					0.07092582399980074
DARHLAAIL	9	Unmodified	_DARHLAAIL_					0	0	0			REV__tr|A0A553SJY7|A0A553SJY7_NIACICelldivisionproteinFtsAOS=NialliacirculansOX=1397GN=CEQ21_17585PE=4SV=1	REV__tr|A0A553SJY7|A0A553SJY7_NIACICelldivisionproteinFtsAOS=NialliacirculansOX=1397GN=CEQ21_17585PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.26953125	2	490.287808	978.561064	0.4863	0.00023843	-1.5107	-0.00074066	-1.0244	-0.00050224	490.28688285636275	59.656	0.63749	56.264	56.051	56.689	-3.392					20	12	2	0	0	0	0.027462	1	3993	3993		21.96	10.449	1	37742	+		3573	30057	2724	2734	4808	4808					0.07092582399980074
DARHLAAIL	9	Unmodified	_DARHLAAIL_					0	0	0			REV__tr|A0A553SJY7|A0A553SJY7_NIACICelldivisionproteinFtsAOS=NialliacirculansOX=1397GN=CEQ21_17585PE=4SV=1	REV__tr|A0A553SJY7|A0A553SJY7_NIACICelldivisionproteinFtsAOS=NialliacirculansOX=1397GN=CEQ21_17585PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	490.287808	978.561064	1.5741	0.00077175	3.681	0.0018047	5.255	0.0025765	490.2896484496982	128.98	0.59413	128.75	128.62	129.22	-0.22696	0.037868	-0.00029383	NaN	49.442	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11339	+		3574	30057	2724	2734							0.07092582399980074
DARPGRAVDLE	11	Unmodified	_DARPGRAVDLE_					0	0	0			REV__ENST00000221980.4_1_19:10403354-10403878:+|nuORF	REV__ENST00000221980.4_1_19:10403354-10403878:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.5781555175781	3	400.210676	1197.6102	1.5319	0.0006131	0.45382	0.00018162	1.9858	0.00079472	400.2107666123062	32.378	0.73635	32.378	32.204	32.941	0					45	14	4	0	0	0	0.025819	1	1414	1414		45.908	8.0966	1	593200	+		3575	23748	2725	2735	4809	4809					0.01929825898287163
DARSQLQVQL	10	Unmodified	_DARSQLQVQL_					0	0	0		ENSG00000179364|ENST00000447393|PACS2;ENST00000547903.1_1_14:105848293-105857603:+|nuORF	ENSG00000179364|ENST00000447393|PACS2	ENSG00000179364|ENST00000447393|PACS2	MULTI-MSMS	OvCa99_classI_Rep5	1	579.3187255859375	2	579.317294	1156.62004	-0.48611	-0.00028161	0.094474	5.4731E-05	-0.39164	-0.00022688	579.3173073372469	61.08	0.51484	61.08	60.859	61.374	0					38	11	4	0	0	0	0.49595	1	5364	5364		54.722	1.1255	1	1927600			3576	7818	2726	2736	4810	4810					0.04799013903652849
DARTNKANPF	10	Unmodified	_DARTNKANPF_					0	0	0		tr|A0A553SNL4|A0A553SNL4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24665PE=4SV=1	tr|A0A553SNL4|A0A553SNL4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24665PE=4SV=1	tr|A0A553SNL4|A0A553SNL4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24665PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	566.3004150390625	2	567.288537	1132.56252	-1.209	-0.00068586	-3.1261	-0.0017734	-4.3351	-0.0024593	567.286691966009	100.61	0.74466	99.782	99.459	100.2	-0.83051					25	14	2	0	0	0	0.026551	1	9169	9169		42.864	0	1	19451			3577	33935	2727	2737	4811	4811					0.001541716980682395
DASVKDNNA	9	Unmodified	_DASVKDNNA_					0	0	0			REV__tr|A0A553SHV1|A0A553SHV1_NIACILipoproteinOS=NialliacirculansOX=1397GN=CEQ21_13680PE=4SV=1	REV__tr|A0A553SHV1|A0A553SHV1_NIACILipoproteinOS=NialliacirculansOX=1397GN=CEQ21_13680PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.2649841308594	2	467.217246	932.419939	0.44329	0.00020711	0.22698	0.00010605	0.67026	0.00031316	467.2173156832353	60.289	0.79243	56.859	56.553	57.345	-3.43					26	15	2	0	0	0	0.027232	1	4063	4063		66.429	8.618	1	81612	+		3578	29842	2728	2738	4812	4812					-0.04897460763959316
DATGLIQAALI	11	Unmodified	_DATGLIQAALI_					0	0	0			REV__tr|A0A7D6ZR91|A0A7D6ZR91_9CLOTN5-carboxyaminoimidazoleribonucleotidemutaseOS=ClostridiumintestinaleOX=36845GN=purEPE=3SV=1	REV__tr|A0A7D6ZR91|A0A7D6ZR91_9CLOTN5-carboxyaminoimidazoleribonucleotidemutaseOS=ClostridiumintestinaleOX=36845GN=purEPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.2930908203125	2	543.313689	1084.61282	-0.99041	-0.0005381	0.14179	7.7037E-05	-0.84862	-0.00046107	543.8140028048856	82.686	0.97631	80.003	79.733	80.71	-2.6829					28	19	2	0	0	0	0.025406	1	6843	6843		46.457	29.739	1	54007	+		3579	32153	2729	2739	4813	4813					0.07390281303219126
DATGLIQAALI	11	Unmodified	_DATGLIQAALI_					0	0	0			REV__tr|A0A7D6ZR91|A0A7D6ZR91_9CLOTN5-carboxyaminoimidazoleribonucleotidemutaseOS=ClostridiumintestinaleOX=36845GN=purEPE=3SV=1	REV__tr|A0A7D6ZR91|A0A7D6ZR91_9CLOTN5-carboxyaminoimidazoleribonucleotidemutaseOS=ClostridiumintestinaleOX=36845GN=purEPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	543.313689	1084.61282	-0.0094152	-5.1154E-06	-3.1422	-0.0017072	-3.1516	-0.0017123	543.8142031607186	81.801	0.72074	80.153	79.665	80.386	-1.6485	0.0748	-0.0017397	NaN	46.457	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45195	+		3580	32153	2729	2739							0.07390281303219126
DATIAERSL	9	Unmodified	_DATIAERSL_					0	0	0			REV__ENST00000418411.6_1_12:113540888-113573291:-|nuORF	REV__ENST00000418411.6_1_12:113540888-113573291:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.80133056640625	2	488.258914	974.503274	0.0039951	1.9506E-06	-0.043829	-2.14E-05	-0.039834	-1.9449E-05	488.25882371359245	64.719	0.49248	64.719	64.503	64.995	0					30	11	4	0	0	0	0.02744	1	5891	5891		36.447	18.185	1	1177900	+		3581	18030	2730	2740	4814	4814					0.01500275683918062
DATNREWWWGR	11	Unmodified	_DATNREWWWGR_					0	0	0		ENSG00000136002|ENST00000409359|ARHGEF4;ENST00000496764.6_1_2:131792732-131796962:+|nuORF;nc|ENSG00000136002|Q9NR80-3|ARHGEF4;nc|ENSG00000136002|Q9NR80-4|ARHGEF4;nc|ENSG00000136002|Q9NR80|ARHGEF4	ENSG00000136002|ENST00000409359|ARHGEF4	ENSG00000136002|ENST00000409359|ARHGEF4	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3245544433594	3	492.897092	1475.66945	-0.022543	-1.1112E-05	3.4974	0.0017238	3.4748	0.0017127	493.2329909679837	79.67	0.8585	77.33	76.754	77.612	-2.3399					23	16	2	0	0	0	0.025864	1	4271	4271		17.167	4.2093	1	26399			3582	4445	2731	2741	4815	4815					-0.04936278087552637
DATPSQVSLL	10	Unmodified	_DATPSQVSLL_					0	0	0		tr|A0A553SGE0|A0A553SGE0_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_10665PE=4SV=1	tr|A0A553SGE0|A0A553SGE0_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_10665PE=4SV=1	tr|A0A553SGE0|A0A553SGE0_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_10665PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	515.7745971679688	2	515.774396	1029.53424	0.25666	0.00013238	-0.44158	-0.00022776	-0.18492	-9.5376E-05	515.7741357954794	109.36	1.83	109.19	108.52	110.35	-0.17237					68	36	2	0	0	0	0.55109	1	10302	10302		47.96	1.9873	1	218150			3583	33147	2732	2742	4816	4816					0.020654289981621332
DATQHHHHLH	10	Unmodified	_DATQHHHHLH_					0	0	0		ENSG00000143032|ENST00000370445|BARHL2	ENSG00000143032|ENST00000370445|BARHL2	ENSG00000143032|ENST00000370445|BARHL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.2352600097656	3	411.52711	1231.5595	1.1745	0.00048333	3.9073	0.001608	5.0817	0.0020913	411.5287343710467	46.321	0.82861	46.321	46.024	46.852	0					23	18	2	0	0	0	0.026871	1	3266	3266		33.922	17.392	1	55844			3584	5006	2733	2743	4817	4817					-0.047016586360769
DATRTISF	8	Unmodified	_DATRTISF_					0	0	0			REV__tr|A0A7D6VT37|A0A7D6VT37_9CLOTACTdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01450PE=4SV=1	REV__tr|A0A7D6VT37|A0A7D6VT37_9CLOTACTdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01450PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	455.7588195800781	2	455.735074	909.455596	-0.4488	-0.00020453	-0.53734	-0.00024488	-0.98614	-0.00044942	455.73468544210647	51.173	0.80244	48	47.771	48.573	-3.1734					22	15	3	0	0	0	0.028476	1	3055	3055		29.15	0	1	91790	+		3585	31570	2734	2744	4818	4818					-0.0027537851627812415
DATVSEKLNI	10	Unmodified	_DATVSEKLNI_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.3212280273438	2	545.292953	1088.57135	-1.0602	-0.00057811	1.2708	0.00069297	0.21065	0.00011487	545.2934056992066	69.828	0.93702	69.828	69.591	70.528	0					44	22	3	0	0	0	0.02665	1	6659	6659		78.264	24.912	1	5416800	+		3586	28942	2735	2745	4819	4819					0.03061100543914108
DATVVAPLKL	10	Unmodified	_DATVVAPLKL_					0	0	0			REV__ENST00000594361.1_1_19:51849976-51850294:-|nuORF	REV__ENST00000594361.1_1_19:51849976-51850294:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	513.8143920898438	2	513.813325	1025.6121	-0.52087	-0.00026763	0.12081	6.2073E-05	-0.40006	-0.00020556	513.8133179520387	96.39	1.8725	94.561	93.78	95.652	-1.8286					114	36	4	0	0	0	0.18827	1	6348	6348		96.19	2.995	1	1310500	+		3587	17717	2736	2746	4820	4820					0.10031486654179389
DAVKYSVKN	9	Unmodified	_DAVKYSVKN_					0	0	0		tr|A0A553SIP5|A0A553SIP5_NIACIPA14domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15290PE=4SV=1	tr|A0A553SIP5|A0A553SIP5_NIACIPA14domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15290PE=4SV=1	tr|A0A553SIP5|A0A553SIP5_NIACIPA14domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15290PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	512.2794799804688	2	512.277106	1022.53966	0.55055	0.00028204	3.0853	0.0015805	3.6358	0.0018626	512.2785275859809	112.08	2.0707	111.96	111.24	113.31	-0.12174					99	41	3	0	0	0	0.3076	1	10602	10602		62.107	3.3255	1	239540			3588	33406	2737	2747	4821	4821					0.029291525806115715
DAVVWLNL	8	Unmodified	_DAVVWLNL_					0	0	0			REV__tr|A0A7D6VS73|A0A7D6VS73_9CLOTAspartate-semialdehydedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=asdPE=3SV=1	REV__tr|A0A7D6VS73|A0A7D6VS73_9CLOTAspartate-semialdehydedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=asdPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.275146484375	2	465.258185	928.501818	-0.45564	-0.00021199	4.1601	0.0019355	3.7045	0.0017235	465.2601183671177	76.671	1.0537	73.732	73.504	74.558	-2.9389					43	21	3	0	0	0	0.028476	1	6160	6160		50.025	19.521	1	253030	+		3589	31475	2738	2748	4822	4822					0.034706863857991266
DAVVWLNL	8	Unmodified	_DAVVWLNL_					0	0	0			REV__tr|A0A7D6VS73|A0A7D6VS73_9CLOTAspartate-semialdehydedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=asdPE=3SV=1	REV__tr|A0A7D6VS73|A0A7D6VS73_9CLOTAspartate-semialdehydedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=asdPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	465.258185	928.501818	-0.67305	-0.00031314	4.889	0.0022746	4.2159	0.0019615	465.2603971602067	75.757	1.1946	73.903	73.376	74.571	-1.854	0.085872	0.00033384	NaN	63.306	50	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69303	+		3590	31475	2738	2748							0.034706863857991266
DAWPSVLVQ	9	Unmodified	_DAWPSVLVQ_					0	0	0		ENSG00000221900|ENST00000408890|POM121L12	ENSG00000221900|ENST00000408890|POM121L12	ENSG00000221900|ENST00000408890|POM121L12	MULTI-MSMS	OvCa9_classI_Rep3	3	507.7663269042969	2	507.766374	1013.5182	-0.36325	-0.00018445	0.3453	0.00017533	-0.01795	-9.1144E-06	507.76638761877894	131.88	1.6751	130.75	129.96	131.63	-1.1249					88	33	4	0	0	0	0.50149	1	10521	10521		42.396	1.618	1	127470			3591	9233	2739	2749	4823	4823					0.011977675519119657
DCEFMRTI	8	Unmodified	_DCEFMRTI_					0	0	0			REV__nc|ENSG00000151612|Q17R98-3|ZNF827	REV__nc|ENSG00000151612|Q17R98-3|ZNF827	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.7352294921875	2	507.722795	1013.43104	1.8913	0.00096026	0.94937	0.00048202	2.8407	0.0014423	507.7231932927716	118.4	0.61014	118.4	118.16	118.77	0					24	12	3	0	0	0	0.028476	1	13576	13576		42.396	20.436	1	127870	+		3592	20242	2740	2750	4824	4824					-0.07514097985676926
DCFIVDVRHY	10	Unmodified	_DCFIVDVRHY_					0	0	0			REV__ENST00000565455.5_1_16:8987857-9023250:-|nuORF	REV__ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	632.8609008789062	2	633.800423	1265.58629	1.1254	0.00071326	-3.4455	-0.0021838	-2.3202	-0.0014705	633.7981267112501	152.33	2.5022	152.33	150.79	153.3	0					70	54	2	0	0	0	0.026688	1	17904	17904		32.812	0	1	93554	+		3593	22646	2741	2751	4825	4825					-0.03587730859749172
DCGPGFKGRRC	11	Unmodified	_DCGPGFKGRRC_					0	0	0		ENST00000466618.1_1_2:242002912-242027813:+|nuORF;nc|ENSG00000162804|Q8TER0-3|SNED1;nc|ENSG00000162804|Q8TER0-4|SNED1;ENSG00000162804|ENST00000310397|SNED1	ENST00000466618.1_1_2:242002912-242027813:+|nuORF	ENST00000466618.1_1_2:242002912-242027813:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.3037719726562	2	598.276592	1194.53863	1.2909	0.00077229	3.8744	0.002318	5.1653	0.0030903	598.2784550885241	138.95	0.24371	138.95	138.88	139.12	0					5	4	2	0	0	0	0.025638	1	16240	16240		37.812	4.9991	1	20418			3594	6237	2742	2752	4826	4826					-0.05085708331580463
DCIESTGDYF	10	Unmodified	_DCIESTGDYF_					0	0	0		nc|ENSG00000111291|Q9NZD1-2|GPRC5D;nc|ENSG00000111291|Q9NZD1-3|GPRC5D;ENSG00000111291|ENST00000228887|GPRC5D	nc|ENSG00000111291|Q9NZD1-2|GPRC5D	nc|ENSG00000111291|Q9NZD1-2|GPRC5D	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.3111572265625	2	575.223879	1148.43321	-1.2271	-0.00070588	-4.3321	-0.0024919	-5.5592	-0.0031978	575.2204016486058	99.73	0.41026	97.405	97.108	97.518	-2.3253					13	7	4	0	0	0	0.026523	1	8894	8894		58.782	0	1	9463.8			3595	2818	2743	2753	4827	4827					-0.13507390766881144
DCLHLALTI	9	Unmodified	_DCLHLALTI_					0	0	0			REV__nc|ENSG00000110080|Q11206-7|ST3GAL4	REV__nc|ENSG00000110080|Q11206-7|ST3GAL4	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.2882080078125	2	499.770603	997.526652	-1.2141	-0.00060677	0.7719	0.00038578	-0.44218	-0.00022099	499.7709464596411	91.498	0.76084	89.474	89.231	89.992	-2.0241					23	14	2	0	0	0	0.027392	1	5723	5723		63.306	15.649	1	31231	+		3596	17971	2744	2754	4828	4828					0.027789981968680877
DCMKMYGDL	9	Unmodified	_DCMKMYGDL_					0	0	0		ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.7816162109375	2	538.216488	1074.41842	1.2472	0.00067128	1.1841	0.00063733	2.4314	0.0013086	538.2170494967864	124.63	0.46507	124.63	124.42	124.89	0					11	9	2	0	0	0	0.027462	1	14372	14372		40.778	0	1	65655			3597	978	2745	2755	4829	4829					-0.11580877440223958
DCNEIFIQL	9	Unmodified	_DCNEIFIQL_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.2478637695312	2	547.762975	1093.5114	0.95648	0.00052392	3.0151	0.0016516	3.9716	0.0021755	547.7629258223432	142.9	0.33421	142.9	142.78	143.12	0					9	6	2	0	0	0	0.027459	1	16695	16695		44.377	12.847	1	20706			3598	3504	2746	2756	4830	4830					-0.031619133909771335
DCNGSRSQ	8	Unmodified	_DCNGSRSQ_					0	0	0		ENSG00000141429|ENST00000269195|GALNT1	ENSG00000141429|ENST00000269195|GALNT1	ENSG00000141429|ENST00000269195|GALNT1	MULTI-SECPEP	OvCa9_classI_Rep2	2	432.7323303222656	2	433.674691	865.334829	-1.0618	-0.00046046	1.1429	0.00049564	0.081121	3.518E-05	433.6740934320858	54.37	2.0375	51.556	50.034	52.072	-2.8139					55	40	2	0	0	0	0.028476	1	3673	3673		10.866	3.1753	1	22392			3599	4910	2747	2757	4831	4831					-0.10322529501399913
DCSLFEDES	9	Unmodified	_DCSLFEDES_					0	0	0			REV__ENSG00000136878|ENST00000372429|USP20	REV__ENSG00000136878|ENST00000372429|USP20	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.3045654296875	2	522.694955	1043.37536	0.18909	9.8835E-05	4.1416	0.0021648	4.3307	0.0022636	522.6957379412717	141.27	0.62712	139.81	139.5	140.13	-1.4627					36	11	5	0	0	0	0.027462	1	13815	13815		10.866	0	1	24392	+		3600	19418	2748	2758	4832	4832					-0.14459652692312375
DCTALPWQVP	10	Unmodified	_DCTALPWQVP_					0	0	0			REV__ENST00000540797.5_1_15:63885116-63885188:+|nuORF	REV__ENST00000540797.5_1_15:63885116-63885188:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.2978515625	2	565.270967	1128.52738	0.82202	0.00046467	3.5966	0.002033	4.4186	0.0024977	565.2728939611441	105.19	1.1634	103.18	102.53	103.7	-2.0161					38	22	2	0	0	0	0.027056	1	9527	9527		35.618	8.9254	1	47520	+		3601	27359	2749	2759	4833	4833					-0.0317420715409753
DCTALPWQVP	10	Unmodified	_DCTALPWQVP_					0	0	0			REV__ENST00000540797.5_1_15:63885116-63885188:+|nuORF	REV__ENST00000540797.5_1_15:63885116-63885188:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	565.270967	1128.52738	-0.67742	-0.00038292	5.373	0.0030372	4.6956	0.0026543	565.2736335356129	103.85	1.4845	103.28	102.58	104.07	-0.57639	0.10086	0.0011852	NaN	35.618	36	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27531	+		3602	27359	2749	2759							-0.0317420715409753
DCTALPWQVP	10	Unmodified	_DCTALPWQVP_					0	0	0			REV__ENST00000540797.5_1_15:63885116-63885188:+|nuORF	REV__ENST00000540797.5_1_15:63885116-63885188:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	565.270967	1128.52738	0.14858	8.3987E-05	4.3737	0.0024723	4.5223	0.0025563	565.2735468549995	104.51	1.0912	103.08	102.55	103.64	-1.4347	-0.098395	5.5401E-05	NaN	35.618	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53877	+		3603	27359	2749	2759							-0.0317420715409753
DCVKRPNL	8	Unmodified	_DCVKRPNL_					0	0	0		L1P1_dup3131|chr21:8366255-8369545:+|1.1341358509163533|0.0129397411743262|6.45|422.0|82|3|sense	L1P1_dup3131|chr21:8366255-8369545:+|1.1341358509163533|0.0129397411743262|6.45|422.0|82|3|sense	L1P1_dup3131|chr21:8366255-8369545:+|1.1341358509163533|0.0129397411743262|6.45|422.0|82|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.3013916015625	2	472.752744	943.490935	2.52	0.0011913	4.3269	0.0020456	6.8469	0.0032369	472.75458519672947	98.795	0.51907	98.795	98.596	99.115	0					18	12	2	0	0	0	0.028476	1	10882	10882		51.335	10.557	1	463430			3604	14637	2750	2760	4834	4834					0.016929607398765256
DCWQKAGE	8	Unmodified	_DCWQKAGE_					0	0	0		ENST00000404404.5_1_7:5036913-5037096:+|nuORF	ENST00000404404.5_1_7:5036913-5037096:+|nuORF	ENST00000404404.5_1_7:5036913-5037096:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	468.6992492675781	2	468.697635	935.380716	0.25552	0.00011976	3.3262	0.001559	3.5818	0.0016788	468.69905183954364	20.201	0.60585	20.201	20.089	20.695	0					39	22	3	0	0	0	0.60899	1	8	8		62.107	7.3427	1	203770			3605	11451	2751	2761	4835	4835					-0.08955884319175311
DCYSKLKEL	9	Unmodified	_DCYSKLKEL_					0	0	0		ENST00000462623.1_1_3:62109880-62110168:-|nuORF;ID2|p.T105Pfs*20|1|0.35|ENSG00000115738|chr2:8682478-8682478|A/-|frameshift_variant;ENSG00000115738|ENST00000396290|ID2	ENST00000462623.1_1_3:62109880-62110168:-|nuORF	ENST00000462623.1_1_3:62109880-62110168:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.298828125	2	549.778625	1097.5427	1.0114	0.00055604	-2.0943	-0.0011514	-1.083	-0.00059539	549.7773479971319	132.79	0.66562	132.79	132.46	133.13	0					26	13	3	0	0	0	0.027462	1	15406	15406		42.864	1.4377	1	151490			3606	3122	2752	2762	4836	4836					-0.002173403568804133
DCYWHQPI	8	Unmodified	_DCYWHQPI_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.7625122070312	2	531.229102	1060.44365	-0.54474	-0.00028938	2.4564	0.0013049	1.9117	0.0010156	531.2302241148525	61.707	0.53616	61.707	61.458	61.994	0					24	12	3	0	0	0	0.028476	1	5478	5478		35.201	13.241	1	1232700	+		3607	17073	2753	2763	4837	4837					-0.0841531853111519
DDAFAPTVLL	10	Unmodified	_DDAFAPTVLL_					0	0	0			REV__tr|A0A553SU70|A0A553SU70_NIACIWxLdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06470PE=4SV=1	REV__tr|A0A553SU70|A0A553SU70_NIACIWxLdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06470PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	531.2748413085938	2	531.279315	1060.54408	-0.89928	-0.00047777	-3.3392	-0.001774	-4.2385	-0.0022518	531.2775331640955	85.76	2.0555	83.54	82.937	84.992	-2.2204					88	40	3	0	0	0	0.31157	1	5054	5054		79.451	15.244	1	1646200	+		3608	31046	2754	2764	4838	4838					0.01622617003522464
DDAGCPDLGR	10	Unmodified	_DDAGCPDLGR_					0	0	0		MYO18B|p.K2401R|1|0.35|ENSG00000133454|chr22:26027176-26027176|A/G|missense_variant	MYO18B|p.K2401R|1|0.35|ENSG00000133454|chr22:26027176-26027176|A/G|missense_variant	MYO18B|p.K2401R|1|0.35|ENSG00000133454|chr22:26027176-26027176|A/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.75	2	509.716556	1017.41856	-0.3666	-0.00018686	-3.4204	-0.0017434	-3.787	-0.0019303	509.715200369091	43.334	0.33485	43.334	43.143	43.478	0					9	7	2	0	0	0	0.026464	1	2854	2854		69.628	23.676	1	40120			3609	14851	2755	2765	4839	4839					-0.08945418124358184
DDAPAEEVSL	10	Unmodified	_DDAPAEEVSL_					0	0	0			REV__nc|nan|A6NN90|C2orf81	REV__nc|nan|A6NN90|C2orf81	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.7730712890625	2	523.237844	1044.46113	-0.66799	-0.00034952	2.3706	0.0012404	1.7026	0.00089084	523.2359104389582	56.209	0.60847	56.209	55.973	56.581	0					31	14	3	0	0	0	0.026688	1	4614	4614		49.442	5.3247	1	469370	+		3610	23667	2756	2766	4840	4840					-0.0593174451514642
DDCTGEPGAH	10	Unmodified	_DDCTGEPGAH_					0	0	0			REV__nc|ENSG00000090006|Q8N2S1|LTBP4	REV__nc|ENSG00000090006|Q8N2S1|LTBP4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.3053894042969	2	501.185088	1000.35562	0.18141	9.092E-05	-1.0381	-0.00052028	-0.85668	-0.00042936	501.18404261548403	96.545	0.6029	94.119	93.913	94.516	-2.4256					16	11	2	0	0	0	0.026639	1	8559	8559		44.117	6.9577	1	36022	+		3611	28754	2757	2767	4841	4841					-0.14453983912392232
DDDAKLKAEI	10	Unmodified	_DDDAKLKAEI_					0	0	0		nc|ENSG00000133640|Q96JM4-2|LRRIQ1;ENSG00000133640|ENST00000393217|LRRIQ1;LRRIQ1|p.K490Nfs*28|1|0.27|ENSG00000133640|chr12:85056257-85056257|A/-|frameshift_variant;LRRIQ1|p.E1195Kfs*10|1|0.44|ENSG00000133640|chr12:85124094-85124094|A/-|frameshift_variant;ENST00000525971.6_1_12:85431954-85518298:+|nuORF;ENST00000529408.1_1_12:85431954-85441296:+|nuORF	nc|ENSG00000133640|Q96JM4-2|LRRIQ1	nc|ENSG00000133640|Q96JM4-2|LRRIQ1	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.29052734375	2	559.290411	1116.56627	0.084443	4.7228E-05	-0.040385	-2.2587E-05	0.044058	2.4641E-05	559.2903298191266	124.28	1.4439	122.89	122.57	124.01	-1.3908					73	27	4	0	0	0	0.38315	1	11816	11816		70.816	1.1886	1	497980			3612	4229	2758	2768	4842	4842					0.012647966812892264
DDDDDEEDDGA	11	Unmodified	_DDDDDEEDDGA_					0	0	0		chr2:231461273-231461540|86|14.84|0.49|4.92|-|2|None,NCL|1	chr2:231461273-231461540|86|14.84|0.49|4.92|-|2|None,NCL|1	chr2:231461273-231461540|86|14.84|0.49|4.92|-|2|None,NCL|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	605.3135986328125	2	605.678741	1209.34293	1.8454	0.0011177	0.36174	0.0002191	2.2072	0.0013368	605.6785143051036	138.23	0.24159	138.23	138.11	138.35	0					6	4	2	0	0	0	0.026137	1	16128	16128		13.454	0	1	35317			3613	439	2759	2769	4843	4843					-0.25336813352259924
DDDFRRRG	8	Unmodified	_DDDFRRRG_					0	0	0		ENST00000431183.6_2_2:130934202-130939226:-|nuORF	ENST00000431183.6_2_2:130934202-130939226:-|nuORF	ENST00000431183.6_2_2:130934202-130939226:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.7543334960938	2	518.749579	1035.4846	0.03856	2.0003E-05	1.1863	0.00061537	1.2248	0.00063537	518.7495689683774	99.478	0.81931	97.793	97.524	98.344	-1.685					22	15	2	0	0	0	0.028476	1	6692	6692		65.803	0	1	31841			3614	11798	2760	2770	4844	4844					-0.03171841167295497
DDDIIFDYK	9	Unmodified	_DDDIIFDYK_					0	0	0		tr|A0A7D6ZWE6|A0A7D6ZWE6_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=HZF06_07575PE=4SV=1	tr|A0A7D6ZWE6|A0A7D6ZWE6_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=HZF06_07575PE=4SV=1	tr|A0A7D6ZWE6|A0A7D6ZWE6_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=HZF06_07575PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	572.2704467773438	2	572.263862	1142.51317	0.99346	0.00056852	1.4076	0.00080555	2.4011	0.0013741	572.2643304152645	138.97	0.72629	138.97	138.78	139.51	0					23	14	3	0	0	0	0.48324	1	16231	16231		44.117	0	1	96398			3615	35839	2761	2771	4845	4845					-0.05238581101366435
DDDRASKNI	9	Unmodified	_DDDRASKNI_					0	0	0		nc|ENSG00000120539|Q96GX5-2|MASTL;nc|ENSG00000120539|Q96GX5-3|MASTL;ENSG00000120539|ENST00000375940|MASTL	nc|ENSG00000120539|Q96GX5-2|MASTL	nc|ENSG00000120539|Q96GX5-2|MASTL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.782470703125	2	517.249077	1032.4836	0.35692	0.00018461	-0.011542	-5.9701E-06	0.34537	0.00017864	517.2495277307578	68.412	0.39291	64.922	64.72	65.113	-3.4902					10	7	2	0	0	0	0.027418	1	5063	5063		75.043	10.836	1	14405			3616	3434	2762	2772	4846	4846					-0.03134100326838052
DDDSGENDGEN	11	Unmodified	_DDDSGENDGEN_					0	0	0			REV__ENST00000556808.1_1_X:53114705-53115656:+|nuORF	REV__ENST00000556808.1_1_X:53114705-53115656:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	583.6868286132812	2	583.689443	1165.36433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.024	1	18.685	18.185	19.185	-1.3386								0	0	0	0.19474	1	3	3		27.047	10.33	1		+		3617	22411	2763	2773	4847	4847					-0.21173383532868684
DDDVDTDSDEG	11	Unmodified	_DDDVDTDSDEG_					0	0	0			REV__nc|ENSG00000137337|Q14676-4|MDC1	REV__nc|ENSG00000137337|Q14676-4|MDC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	592.2813720703125	2	591.699477	1181.3844	2.191	0.0012964	1.3584	0.00080379	3.5495	0.0021002	592.2010982233397	85.89	0.16228	85.89	85.75	85.912	0					5	3	2	0	0	0	0.026172	1	9017	9017		12.812	1.3007	1	82626	+		3618	19445	2764	2774	4848	4848					-0.19903632592945542
DDDVPILLFE	10	Unmodified	_DDDVPILLFE_					0	0	0		nc|ENSG00000147316|Q8NEM0-3|MCPH1;MCPH1|p.S607Mfs*14|1|0.1|ENSG00000147316|chr8:6445542-6445542|G/-|frameshift_variant;ENSG00000147316|ENST00000344683|MCPH1	nc|ENSG00000147316|Q8NEM0-3|MCPH1	nc|ENSG00000147316|Q8NEM0-3|MCPH1	MULTI-MSMS	OvCa9_classI_Rep2	2	588.2974853515625	2	588.295162	1174.57577	-0.12574	-7.3971E-05	3.8173	0.0022457	3.6916	0.0021717	588.2970977003064	86.655	1.6797	85.224	84.751	86.431	-1.4311					103	32	5	0	0	0	0.52321	1	7518	7518		51.335	5.3632	1	558380			3619	5349	2765	2775	4849	4849					-0.004534350331823589
DDEKLRSQL	9	Unmodified	_DDEKLRSQL_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	OvCa9_classI_Rep2	2	552.2906494140625	2	552.288202	1102.56185	0.37749	0.00020848	2.6991	0.0014907	3.0766	0.0016991	552.289583129945	94.637	2.6154	93.537	93.165	95.78	-1.0995					119	52	4	0	0	0	0.3076	1	8490	8490		62.107	1.9892	1	486490			3620	3504	2766	2776	4850	4850					0.014673322583803383
DDEKVKKNE	9	Unmodified	_DDEKVKKNE_					0	0	0		nc|ENSG00000163431|P29536-2|LMOD1;ENSG00000163431|ENST00000367288|LMOD1	nc|ENSG00000163431|P29536-2|LMOD1	nc|ENSG00000163431|P29536-2|LMOD1	MULTI-MSMS	OvCa99_classI_Rep5	1	552.783447265625	2	552.78021	1103.54587	1.6148	0.00089263	4.374	0.0024178	5.9888	0.0033105	552.7825123333747	113.78	0.61681	113.78	113.53	114.15	0					30	13	3	0	0	0	0.37135	1	12970	12970		54.776	5.3348	1	605470			3621	6304	2767	2777	4851	4851					-0.0017637397850194247
DDELINAPF	9	Unmodified	_DDELINAPF_					0	0	0			REV__PLCB4|p.S488F|1|0.36|ENSG00000101333|chr20:9395571-9395571|C/T|missense_variant	REV__PLCB4|p.S488F|1|0.36|ENSG00000101333|chr20:9395571-9395571|C/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.802001953125	2	517.245472	1032.47639	-1.7166	-0.00088792	-3.622	-0.0018735	-5.3386	-0.0027614	517.2432482923397	119.05	0.77483	117.71	117.47	118.25	-1.3444					19	14	2	0	0	0	0.027433	1	11177	11177		54.776	30.272	1	26042	+		3622	29301	2768	2778	4852	4852					-0.03854832927299867
DDELINAPF	9	Unmodified	_DDELINAPF_					0	0	0			REV__PLCB4|p.S488F|1|0.36|ENSG00000101333|chr20:9395571-9395571|C/T|missense_variant	REV__PLCB4|p.S488F|1|0.36|ENSG00000101333|chr20:9395571-9395571|C/T|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	517.245472	1032.47639	-1.1229	-0.0005808	-4.5667	-0.0023621	-5.6895	-0.0029429	517.2431245679868	117.91	0.5462	117.76	117.59	118.13	-0.14755	0.038868	-0.00033213	NaN	54.776	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14920	+		3623	29301	2768	2778							-0.03854832927299867
DDELINAPF	9	Unmodified	_DDELINAPF_					0	0	0			REV__PLCB4|p.S488F|1|0.36|ENSG00000101333|chr20:9395571-9395571|C/T|missense_variant	REV__PLCB4|p.S488F|1|0.36|ENSG00000101333|chr20:9395571-9395571|C/T|missense_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	517.245472	1032.47639	0.62676	0.00032419	-5.633	-0.0029136	-5.0062	-0.0025894	517.2421109219682	118.73	0.49483	117.7	117.49	117.98	-1.0271	-0.023203	-0.0014352	NaN	54.776	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11788	+		3624	29301	2768	2778							-0.03854832927299867
DDELIRYI	8	Unmodified	_DDELIRYI_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.76953125	2	518.769114	1035.52368	-0.84698	-0.00043939	0.71291	0.00036984	-0.13407	-6.9553E-05	518.7693309592166	82.441	1.5097	79.758	79.298	80.808	-2.6829					83	30	4	0	0	0	0.60331	1	6851	6851		63.306	13.865	1	876750			3625	3653	2769	2779	4853	4853					0.007334463437246086
DDEPQPEVSLE	11	Unmodified	_DDEPQPEVSLE_					0	0	0		ENSG00000124449|ENST00000244314|IRGC	ENSG00000124449|ENST00000244314|IRGC	ENSG00000124449|ENST00000244314|IRGC	MULTI-MSMS	OvCa9_classI_Rep2	2	629.27880859375	2	629.277697	1256.54084	-2.0177	-0.0012697	2.5096	0.0015792	0.4919	0.00030954	629.2792052758709	117.72	2.1801	117.57	117.19	119.37	-0.14755					115	43	5	0	0	0	0.34051	1	11290	11290		65.465	6.6834	1	400120			3626	3652	2770	2780	4854	4854					-0.07716722631812445
DDFGFVKLF	9	Unmodified	_DDFGFVKLF_					0	0	0		nc|ENSG00000214595|Q6ZMW3-2|EML6;ENSG00000214595|ENST00000356458|EML6	nc|ENSG00000214595|Q6ZMW3-2|EML6	nc|ENSG00000214595|Q6ZMW3-2|EML6	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.3045043945312	2	544.276575	1086.5386	1.9555	0.0010643	3.9735	0.0021627	5.9291	0.003227	544.2777598558063	133.92	0.33484	133.92	133.77	134.1	0					12	6	3	0	0	0	0.027461	1	15580	15580		40.778	0	1	25324			3627	9175	2771	2781	4855	4855					-0.0012106178828616976
DDFHKLMY	8	Oxidation (M)	_DDFHKLM(Oxidation (M))Y_		DDFHKLM(1)Y		DDFHKLM(77)Y	0	0	1			REV__tr|A0A7D6VPS1|A0A7D6VPS1_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00145PE=4SV=1	REV__tr|A0A7D6VPS1|A0A7D6VPS1_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00145PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	542.741943359375	2	542.742042	1083.46953	0.30139	0.00016357	1.279	0.00069419	1.5804	0.00085776	542.7403808469447	73.856	0.72688	73.856	73.597	74.324	0					64	18	5	0	0	0	0.50674	1	7272	7272		76.847	16.443	1	3288700	+		3628	31270	2772	2782	4856	4856		692			-0.06886469079518065
DDFNVTQKV	9	Unmodified	_DDFNVTQKV_					0	0	0			REV__tr|A0A553SR87|A0A553SR87_NIACIRing-cleavingdioxygenaseOS=NialliacirculansOX=1397GN=CEQ21_00540PE=4SV=1	REV__tr|A0A553SR87|A0A553SR87_NIACIRing-cleavingdioxygenaseOS=NialliacirculansOX=1397GN=CEQ21_00540PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.27734375	2	533.264196	1064.51384	0.36044	0.00019221	-2.2526	-0.0012012	-1.8921	-0.001009	533.2635907145681	85.735	0.84299	83.088	82.8	83.643	-2.6463					33	16	3	0	0	0	0.027462	1	7282	7282		32.812	0	1	63994	+		3629	30703	2773	2783	4857	4857					-0.015837416616705013
DDFNVTQKV	9	Unmodified	_DDFNVTQKV_					0	0	0			REV__tr|A0A553SR87|A0A553SR87_NIACIRing-cleavingdioxygenaseOS=NialliacirculansOX=1397GN=CEQ21_00540PE=4SV=1	REV__tr|A0A553SR87|A0A553SR87_NIACIRing-cleavingdioxygenaseOS=NialliacirculansOX=1397GN=CEQ21_00540PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	533.264196	1064.51384	-2.2884	-0.0012203	1.1312	0.0006032	-1.1572	-0.0006171	533.2651136149932	84.651	1.0556	83.105	82.64	83.696	-1.5462	-0.024622	0.0014748	NaN	32.812	36	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24171	+		3630	30703	2773	2783							-0.015837416616705013
DDGAQHYI	8	Unmodified	_DDGAQHYI_					0	0	0		SPAG17|p.E509Lfs*16|1|0.03|ENSG00000155761|chr1:118086757-118086758|-/AA|frameshift_variant;SPAG17|p.N593Rfs*8|1|0.18|ENSG00000155761|chr1:118081606-118081627|TTGAAGGCTCGTTCTACTTCAT/-|frameshift_variant;ENSG00000155761|ENST00000336338|SPAG17	SPAG17|p.E509Lfs*16|1|0.03|ENSG00000155761|chr1:118086757-118086758|-/AA|frameshift_variant	SPAG17|p.E509Lfs*16|1|0.03|ENSG00000155761|chr1:118086757-118086758|-/AA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	459.2572021484375	2	459.701232	917.38791	-0.33734	-0.00015508	-2.8931	-0.00133	-3.2304	-0.001485	459.69974763761473	47.123	1.2705	44.051	43.552	44.823	-3.0724					37	24	2	0	0	0	0.028476	1	2596	2596		11.511	0	1	49546			3631	5801	2774	2784	4858	4858					-0.07408828447091764
DDGVINMSI	9	Unmodified	_DDGVINMSI_					0	0	0		nc|ENSG00000198682|O95340|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	nc|ENSG00000198682|O95340|PAPSS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.24676513671875	2	482.226225	962.437897	0.024445	1.1788E-05	-0.017363	-8.3727E-06	0.0070822	3.4152E-06	482.22610257806076	58.468	0.49749	58.468	58.237	58.734	0					15	11	2	0	0	0	0.027461	1	5005	5005		40.778	5.1599	1	362190			3632	15259	2775	2785	4859	4859					-0.0448246183344736
DDGYAKAKI	9	Unmodified	_DDGYAKAKI_					0	0	0		tr|A0A553SRX1|A0A553SRX1_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_01960PE=3SV=1	tr|A0A553SRX1|A0A553SRX1_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_01960PE=3SV=1	tr|A0A553SRX1|A0A553SRX1_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_01960PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.7808837890625	2	490.756007	979.497461	-1.034	-0.00050746	-2.537	-0.001245	-3.571	-0.0017525	490.75528442165114	49.981	0.52033	49.981	49.768	50.288	0					16	11	2	0	0	0	0.027462	1	3803	3803		16.473	0	1	270150			3633	34307	2776	2786	4860	4860					0.006891771722393969
DDGYIAVIAV	10	Unmodified	_DDGYIAVIAV_					0	0	0			REV__ENSG00000167291|ENST00000310924|TBC1D16	REV__ENSG00000167291|ENST00000310924|TBC1D16	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.2955322265625	2	518.27149	1034.52843	0.54942	0.00028475	-2.9077	-0.001507	-2.3583	-0.0012222	518.2698910822346	92.737	0.66956	91.569	91.235	91.904	-1.168					20	12	2	0	0	0	0.026582	1	8277	8277		26.693	7.5894	1	19133	+		3634	21268	2777	2787	4861	4861					0.012543304864948368
DDHLINAVR	9	Unmodified	_DDHLINAVR_					0	0	0			REV__ENSG00000023318|ENST00000262455|ERP44	REV__ENSG00000023318|ENST00000262455|ERP44	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.3405151367188	2	526.777805	1051.54106	-2.8399	-0.001496	1.0778	0.00056775	-1.7621	-0.00092823	526.7781401095444	87.894	0.44931	85.286	85.023	85.472	-2.608					13	8	2	0	0	0	0.027441	1	7477	7477		68.787	36.832	1	48511	+		3635	16556	2778	2788	4862	4862					0.0173478666936262
DDIAALLK	8	Unmodified	_DDIAALLK_					0	0	0			REV__nc|ENSG00000004766|Q96JG6-3|VPS50	REV__nc|ENSG00000004766|Q96JG6-3|VPS50	MULTI-MSMS	OvCa9_classI_Rep2	2	429.749267578125	2	429.750193	857.485833	-0.34003	-0.00014613	-1.8302	-0.00078655	-2.1703	-0.00093267	429.7491781580128	31.562	0.84	28.853	28.69	29.53	-2.7097					29	16	3	0	0	0	0.72896	1	972	972		37.159	3.6435	1	69904	+		3636	16380	2779	2789	4863	4863					0.051389801488994635
DDIDELAVQ	9	Unmodified	_DDIDELAVQ_					0	0	0			REV__nc|ENSG00000107736|Q9H251-4|CDH23	REV__nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.8072509765625	2	509.240386	1016.46622	-1.2136	-0.00061799	1.8917	0.00096331	0.67811	0.00034532	509.24097945749713	60.929	1.8355	58.159	57.291	59.126	-2.7702					68	34	3	0	0	0	0.027462	1	4493	4493		35.618	8.8222	1	256640	+		3637	17855	2780	2790	4864	4864					-0.041354406525101695
DDIDSMETD	9	Unmodified	_DDIDSMETD_					0	0	0			REV__nc|ENSG00000139220|O75334-7|PPFIA2	REV__nc|ENSG00000139220|O75334-7|PPFIA2	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.7670288085938	2	520.689869	1039.36519	-0.58947	-0.00030693	1.0696	0.00055691	0.48008	0.00024997	520.6904244877844	76.196	0.20715	73.824	73.721	73.928	-2.3715					5	3	2	0	0	0	0.027448	1	3906	3906		20.947	0	1	5546.3	+		3638	19599	2781	2791	4865	4865					-0.1529226041752736
DDIEQWFT	8	Unmodified	_DDIEQWFT_					0	0	0		ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-4|TP53;TP53|p.R273Lfs*72|1|0.81|ENSG00000141510|chr17:7673802-7673802|C/-|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;TP53|p.N288Kfs*18|1|0.7|ENSG00000141510|chr17:7673756-7673757|-/T|frameshift_variant;nc|ENSG00000141510|P04637-6|TP53;TP53|p.P316Sfs*21|1|0.91|ENSG00000141510|chr17:7673582-7673583|-/A|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;TP53|p.E343Gfs*2|1|0.53|ENSG00000141510|chr17:7670681-7670681|T/-|frameshift_variant;TP53|p.C277Vfs*68|1|0.58|ENSG00000141510|chr17:7673792-7673792|G/-|frameshift_variant;TP53|p.K320Rfs*25|1|0.82|ENSG00000141510|chr17:7673571-7673571|C/-|frameshift_variant;chr17:7675215-7675994|303|31.2|0.42|6.22|-|ENST00000604348|TP53,TP53;TP53|p.R333Vfs*12|1|0.81|ENSG00000141510|chr17:7670712-7670712|G/-|frameshift_variant;TP53|p.R342Efs*3|1|0.71|ENSG00000141510|chr17:7670685-7670685|G/-|frameshift_variant;TP53|p.T284Qfs*61|1|0.58|ENSG00000141510|chr17:7673770-7673770|T/-|frameshift_variant;TP53|p.V272Cfs*73|1|0.61|ENSG00000141510|chr17:7673806-7673806|C/-|frameshift_variant;TP53|p.R282Pfs*65|1|0.8|ENSG00000141510|chr17:7673775-7673776|-/CGGCG|frameshift_variant;nc|ENSG00000141510|P04637-3|TP53;TP53|p.M340Sfs*8|1|0.75|ENSG00000141510|chr17:7670690-7670691|-/TCAC|frameshift_variant;TP53|p.L348Wfs*22|1|0.63|ENSG00000141510|chr17:7670666-7670666|A/-|frameshift_variant;TP53|p.N345Mfs*25|1|0.68|ENSG00000141510|chr17:7670677-7670677|C/-|frameshift_variant;TP53|p.F338Lfs*7|1|0.55|ENSG00000141510|chr17:7670695-7670695|G/-|frameshift_variant;TP53|p.N210Tfs*37|1|0.89|ENSG00000141510|chr17:7674902-7674902|T/-|frameshift_variant;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;TP53|p.H178Tfs*69|1|1.0|ENSG00000141510|chr17:7675080-7675080|G/-|frameshift_variant;TP53|p.C242Afs*5|2|0.84|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;TP53|p.V218Cfs*29|1|0.71|ENSG00000141510|chr17:7674879-7674879|C/-|frameshift_variant;TP53|p.C141Afs*29|2|0.6|ENSG00000141510|chr17:7675192-7675192|G/-|frameshift_variant;TP53|p.Q167Tfs*14|1|0.69|ENSG00000141510|chr17:7675113-7675114|-/T|frameshift_variant;TP53|p.Q144Lfs*5|1|0.58|ENSG00000141510|chr17:7675181-7675182|-/A|frameshift_variant;TP53|p.Q144Afs*16|1|0.53|ENSG00000141510|chr17:7675152-7675182|CGGGCGGGGGTGTGGAATCAACCCACAGCTG/-|frameshift_variant;TP53|p.T150Afs*16|1|0.7|ENSG00000141510|chr17:7675152-7675164|CGGGCGGGGGTGT/-|frameshift_variant;TP53|p.Q192Sfs*55|1|0.96|ENSG00000141510|chr17:7674957-7674957|G/-|frameshift_variant;TP53|p.N239*|1|0.81|ENSG00000141510|chr17:7674248-7674249|-/A|frameshift_variant;TP53|p.P152Rfs*18|1|0.42|ENSG00000141510|chr17:7675157-7675157|G/-|frameshift_variant;TP53|p.Y163Lfs*18|1|0.43|ENSG00000141510|chr17:7675125-7675126|-/G|frameshift_variant;TP53|p.S149Ffs*32|1|0.88|ENSG00000141510|chr17:7675166-7675167|-/A|frameshift_variant;TP53|p.I195Nfs*14|1|0.72|ENSG00000141510|chr17:7674947-7674948|-/T|frameshift_variant;TP53|p.R209Hfs*5|1|0.75|ENSG00000141510|chr17:7674902-7674906|TTTCT/-|frameshift_variant;TP53|p.T140Mfs*28|1|0.79|ENSG00000141510|chr17:7675187-7675193|GGGCAGG/-|frameshift_variant;TP53|p.P223*|1|0.76|ENSG00000141510|chr17:7674864-7674865|GC/-|frameshift_variant;TP53|p.D228*|2|0.86|ENSG00000141510|chr17:7674281-7674282|-/A|frameshift_variant;TP53|p.T102Pfs*21|1|0.67|ENSG00000141510|chr17:7676065-7676065|T/-|frameshift_variant;TP53|p.S99Rfs*23|1|0.67|ENSG00000141510|chr17:7676072-7676075|GGAA/-|frameshift_variant;TP53|p.A86Pfs*34|1|0.89|ENSG00000141510|chr17:7676105-7676114|GGCTGGTGCA/-|frameshift_variant;TP53|p.S90Pfs*33|1|0.93|ENSG00000141510|chr17:7676102-7676102|G/-|frameshift_variant;TP53|p.A76Hfs*47|1|0.86|ENSG00000141510|chr17:7676144-7676144|A/-|frameshift_variant;TP53|p.C124*|1|0.72|ENSG00000141510|chr17:7675997-7675997|G/-|frameshift_variant;TP53|p.K132Vfs*15|1|0.83|ENSG00000141510|chr17:7675214-7675218|ATCTT/-|frameshift_variant;TP53|p.T118Dfs*31|1|0.72|ENSG00000141510|chr17:7676017-7676018|-/C|frameshift_variant;TP53|p.L130Pfs*41|1|0.79|ENSG00000141510|chr17:7675223-7675224|-/GG|frameshift_variant;TP53|p.L330Ffs*15|1|0.51|ENSG00000141510|chr17:7673540-7673540|G/-|frameshift_variant;TP53|p.T123Rfs*48|1|0.77|ENSG00000141510|chr17:7676001-7676002|-/TC|frameshift_variant	ENSG00000141510|ENST00000269305|TP53;TP53|p.L330Ffs*15|1|0.51|ENSG00000141510|chr17:7673540-7673540|G/-|frameshift_variant;TP53|p.T123Rfs*48|1|0.77|ENSG00000141510|chr17:7676001-7676002|-/TC|frameshift_variant	ENSG00000141510|ENST00000269305|TP53	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.2677001953125	2	527.229822	1052.44509	-1.1542	-0.00060851	-0.72533	-0.00038242	-1.8795	-0.00099093	527.229552266071	90.519	0.66512	88.438	88.108	88.773	-2.0805					16	12	2	0	0	0	0.028476	1	5658	5658		26.796	11.154	1	28303			3639	4919;32977;32978	2782	2792	4866	4866					-0.07903405961360477
DDIGENEKIQK	11	Unmodified	_DDIGENEKIQK_					0	0	0		tr|A0A553SQI7|A0A553SQI7_NIACIN-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07760PE=4SV=1	tr|A0A553SQI7|A0A553SQI7_NIACIN-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07760PE=4SV=1	tr|A0A553SQI7|A0A553SQI7_NIACIN-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07760PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	430.21759033203125	3	430.217496	1287.63066	-0.94556	-0.0004068	-0.038743	-1.6668E-05	-0.9843	-0.00042346	430.217379025854	43.871	1.3457	43.871	43.227	44.573	0					92	30	4	0	0	0	0.58642	1	2960	2960		45.908	8.3082	1	1092800			3640	34165	2783	2793	4867	4867					-0.001650482325885605
DDIHKELL	8	Unmodified	_DDIHKELL_					0	0	0		nc|ENSG00000116984|Q99707-2|MTR;ENSG00000116984|ENST00000366577|MTR	nc|ENSG00000116984|Q99707-2|MTR	nc|ENSG00000116984|Q99707-2|MTR	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.78289794921875	2	491.763832	981.513111	1.3083	0.0006434	-1.1192	-0.0005504	0.18911	9.2998E-05	491.76312632557233	84.663	1.8371	82	81.639	83.476	-2.6629					70	37	3	0	0	0	0.028476	1	7267	7267		87.754	27.351	1	428400			3641	3224	2784	2794	4868	4868					0.02161463689287757
DDIKIHTL	8	Unmodified	_DDIKIHTL_					0	0	0		ENSG00000101463|ENST00000376862|SYNDIG1	ENSG00000101463|ENST00000376862|SYNDIG1	ENSG00000101463|ENST00000376862|SYNDIG1	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.76727294921875	2	477.766374	953.518196	-1.0584	-0.00050565	0.73008	0.00034881	-0.32828	-0.00015684	477.766541573941	88.764	1.542	86.161	85.629	87.171	-2.6027					74	30	4	0	0	0	0.61436	1	7592	7592		60.972	6.2073	1	600180			3642	2181	2785	2795	4869	4869					0.0395776755190127
DDILKNKR	8	Unmodified	_DDILKNKR_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-2|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.2896728515625	2	501.290548	1000.56654	1.3674	0.00068548	-1.5595	-0.00078175	-0.19204	-9.6267E-05	501.2895121117765	137.98	2.3901	136.45	135.78	138.17	-1.5284					99	50	3	0	0	0	0.73626	1	13345	13345		33.516	4.366	1	64432			3643	4713	2786	2796	4870	4870					0.06628261191792717
DDILYHVK	8	Unmodified	_DDILYHVK_					0	0	0		nc|ENSG00000164741|Q96QB1-4|DLC1;nc|ENSG00000164741|Q96QB1-1|DLC1;nc|ENSG00000164741|Q96QB1-6|DLC1;ENSG00000164741|ENST00000276297|DLC1	nc|ENSG00000164741|Q96QB1-4|DLC1	nc|ENSG00000164741|Q96QB1-4|DLC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.794921875	2	501.766374	1001.5182	0.37802	0.00018968	-0.2371	-0.00011897	0.14092	7.0708E-05	501.7660488135715	110.35	1.1048	108.75	108.44	109.54	-1.6011					35	20	3	0	0	0	0.028476	1	10168	10168		31.955	2.8053	1	45219			3644	6481	2787	2797	4871	4871					0.01749767551905279
DDINFLRA	8	Unmodified	_DDINFLRA_					0	0	0		CON__P50446	CON__P50446	CON__P50446	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.2803955078125	2	482.248349	962.482145	-0.36875	-0.00017783	1.7373	0.0008378	1.3685	0.00065997	482.2488097330295	77.521	0.96931	74.705	74.391	75.361	-2.8165					26	19	2	0	0	0	0.028476	1	6268	6268		63.306	34.136	1	51324		+	3645	630	2788	2798	4872	4872					-0.0005968962495899177
DDINFLRA	8	Unmodified	_DDINFLRA_					0	0	0		CON__P50446	CON__P50446	CON__P50446	MULTI-MATCH	OvCa9_classI_Rep2	2		2	482.248349	962.482145	-0.86206	-0.00041573	0.86358	0.00041646	0.001515	7.3059E-07	482.2481991072024	76.557	1.1493	74.703	74.202	75.351	-1.854	-0.0010642	-0.00043432	NaN	63.306	25	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14794		+	3646	630	2788	2798							-0.0005968962495899177
DDIQLPSNI	9	Unmodified	_DDIQLPSNI_					0	0	0			REV__ENSG00000114554|ENST00000393409|PLXNA1	REV__ENSG00000114554|ENST00000393409|PLXNA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7591552734375	2	507.758746	1013.50294	-1.7165	-0.00087155	3.2687	0.0016597	1.5523	0.00078817	507.7602660317643	146.72	1.2631	145.28	144.91	146.17	-1.4357					50	24	3	0	0	0	0.22621	1	14441	14441		71.877	2.2498	1	97883	+		3647	18192	2789	2799	4873	4873					-0.00327144035964011
DDIQLPSNI	9	Unmodified	_DDIQLPSNI_					0	0	0			REV__ENSG00000114554|ENST00000393409|PLXNA1	REV__ENSG00000114554|ENST00000393409|PLXNA1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	507.758746	1013.50294	-3.9023	-0.0019814	5.418	0.002751	1.5156	0.00076958	507.7613560733472	146.23	1.5448	145.27	144.95	146.49	-0.95947	-0.008648	0.0010061	NaN	71.877	52	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70820	+		3648	18192	2789	2799							-0.00327144035964011
DDIQLPSNI	9	Unmodified	_DDIQLPSNI_					0	0	0			REV__ENSG00000114554|ENST00000393409|PLXNA1	REV__ENSG00000114554|ENST00000393409|PLXNA1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	507.758746	1013.50294	-1.7165	-0.00087155	3.2687	0.0016597	1.5523	0.00078817	507.7602660317643	146.72	1.2631	145.28	144.91	146.17	-1.4357	-0.0010275	-0.0011765	NaN	71.877	50	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97883	+		3649	18192	2789	2799							-0.00327144035964011
DDITSWMKF	9	Unmodified	_DDITSWMKF_					0	0	0			REV__ENSG00000163161|ENST00000285398|ERCC3	REV__ENSG00000163161|ENST00000285398|ERCC3	MULTI-SECPEP	OvCa9_classI_Rep3	3	570.7820434570312	2	571.762975	1141.5114	-1.5873	-0.00090757	-3.2839	-0.0018776	-4.8712	-0.0027852	571.7600199925992	93.463	0.9119	91.501	91.328	92.24	-1.9617					24	17	2	0	0	0	0.027462	1	5966	5966		21.96	0	1	119320	+		3650	20814	2790	2800	4874	4874					-0.053699133909731245
DDKDSLPKL	9	Unmodified	_DDKDSLPKL_					0	0	0		nc|ENSG00000176087|L0R6Q1|SLC35A4	nc|ENSG00000176087|L0R6Q1|SLC35A4	nc|ENSG00000176087|L0R6Q1|SLC35A4	MULTI-MSMS	OvCa99_classI_Rep5	1	515.7757568359375	2	515.774396	1029.53424	-0.066897	-3.4504E-05	-0.047237	-2.4363E-05	-0.11413	-5.8867E-05	515.7742867408514	62.682	1.057	62.682	62.122	63.179	0					30	25	2	0	0	0	0.13482	1	5594	5594		87.754	0.057861	1	2743600			3651	15189	2791	2801	4875	4875					0.02065428998139396
DDKDSLPKL	9	Unmodified	_DDKDSLPKL_					0	0	0		nc|ENSG00000176087|L0R6Q1|SLC35A4	nc|ENSG00000176087|L0R6Q1|SLC35A4	nc|ENSG00000176087|L0R6Q1|SLC35A4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.774396	1029.53424	1.3158	0.00067866	-1.8569	-0.00095773	-0.54106	-0.00027907	515.7733951510626	65.655	0.99863	62.96	62.469	63.467	-2.6958	0.15739	-0.0018267	NaN	87.754	46	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86575			3652	15189	2791	2801							0.02065428998139396
DDKDSLPKL	9	Unmodified	_DDKDSLPKL_					0	0	0		nc|ENSG00000176087|L0R6Q1|SLC35A4	nc|ENSG00000176087|L0R6Q1|SLC35A4	nc|ENSG00000176087|L0R6Q1|SLC35A4	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	515.774396	1029.53424	-1.0032	-0.00051742	0.64474	0.00033254	-0.35845	-0.00018488	515.7746391925149	66.256	1.3212	62.765	62.467	63.789	-3.4902	-0.036793	0.00075381	NaN	87.754	44	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	512440			3653	15189	2791	2801							0.02065428998139396
DDKLWTISI	9	Unmodified	_DDKLWTISI_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa9_classI_Rep2	2	545.8206787109375	2	545.792589	1089.57063	-0.74284	-0.00040544	2.6973	0.0014722	1.9545	0.0010667	545.7940253521366	83.703	1.2226	82.104	81.778	83	-1.5988					34	23	2	0	0	0	0.027462	1	7229	7229		29.15	1.2673	1	38212	+		3654	28942;32737	2792	2802	4876	4876					0.029423058948623293
DDKNVILSR	9	Unmodified	_DDKNVILSR_					0	0	0		tr|A0A7D6VSX7|A0A7D6VSX7_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06930PE=3SV=1	tr|A0A7D6VSX7|A0A7D6VSX7_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06930PE=3SV=1	tr|A0A7D6VSX7|A0A7D6VSX7_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06930PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.7953491210938	2	530.293288	1058.57202	-1.8447	-0.00097824	1.5633	0.00082899	-0.28145	-0.00014925	530.2939801551018	54.989	1.6332	51.742	51.132	52.765	-3.2474					69	29	4	0	0	0	0.2422	1	3419	3419		69.628	9.5094	1	584120			3655	35065	2793	2803	4877	4877					0.04507939983614051
DDKNVILSR	9	Unmodified	_DDKNVILSR_					0	0	0		tr|A0A7D6VSX7|A0A7D6VSX7_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06930PE=3SV=1	tr|A0A7D6VSX7|A0A7D6VSX7_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06930PE=3SV=1	tr|A0A7D6VSX7|A0A7D6VSX7_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06930PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.293288	1058.57202	-1.779	-0.00094342	0.9653	0.00051189	-0.81374	-0.00043152	530.293505568697	54.844	1.3464	52.03	51.424	52.77	-2.8139	0.14418	-0.00051141	NaN	69.628	59	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88911			3656	35065	2793	2803							0.04507939983614051
DDKQKNLDNI	10	Unmodified	_DDKQKNLDNI_					0	0	0			REV__tr|A0A553SIY3|A0A553SIY3_NIACIPeptidaseM23OS=NialliacirculansOX=1397GN=CEQ21_15720PE=4SV=1	REV__tr|A0A553SIY3|A0A553SIY3_NIACIPeptidaseM23OS=NialliacirculansOX=1397GN=CEQ21_15720PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	601.80615234375	2	601.804217	1201.59388	3.2393	0.0019494	0.20001	0.00012037	3.4393	0.0020698	601.8041789779146	121.65	1.1521	120.62	120.27	121.43	-1.0286					47	21	4	0	0	0	0.59317	1	9332	9332		42.864	3.6114	1	117250	+		3657	29947	2794	2804	4878	4878					0.0011469994153685548
DDKVSTPVVII	11	Unmodified	_DDKVSTPVVII_					0	0	0			REV__nc|ENSG00000063601|Q13613-2|MTMR1	REV__nc|ENSG00000063601|Q13613-2|MTMR1	MULTI-MSMS	OvCa99_classI_Rep5	1	593.34130859375	2	593.339904	1184.66525	1.2968	0.00076942	0.42641	0.00025301	1.7232	0.0010224	593.3400823929463	132.8	0.56689	132.8	132.6	133.17	0					24	11	3	0	0	0	0.48812	1	15443	15443		54.722	3.5297	1	177680	+		3658	16763	2795	2805	4879	4879					0.080308196462056
DDKVSTPVVII	11	Unmodified	_DDKVSTPVVII_					0	0	0			REV__nc|ENSG00000063601|Q13613-2|MTMR1	REV__nc|ENSG00000063601|Q13613-2|MTMR1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	593.339904	1184.66525	1.2968	0.00076942	0.42641	0.00025301	1.7232	0.0010224	593.3400823929463	132.8	0.56689	132.8	132.6	133.17	0	0	0	NaN	54.722	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177680	+		3659	16763	2795	2805							0.080308196462056
DDKWSGTYVI	10	Unmodified	_DDKWSGTYVI_					0	0	0			REV__ENST00000409077.2_2_2:39103193-39109562:+|nuORF	REV__ENST00000409077.2_2_2:39103193-39109562:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	592.2843017578125	2	592.285128	1182.5557	0.25274	0.00014969	-3.5859	-0.0021239	-3.3332	-0.0019742	592.2829728243827	58.177	0.95249	58.177	57.899	58.852	0					60	22	4	0	0	0	0.28845	1	4919	4919		82.241	15.811	1	8378400	+		3660	22682	2796	2806	4880	4880					-0.028271859731376026
DDLAGWLLI	9	Unmodified	_DDLAGWLLI_					0	0	0			REV__nc|ENSG00000162430|Q9NZV5-2|SELENON	REV__nc|ENSG00000162430|Q9NZV5-2|SELENON	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.7942810058594	2	508.276575	1014.5386	0.60046	0.0003052	-3.7357	-0.0018988	-3.1352	-0.0015936	508.2744938339145	128.09	0.65056	126.99	126.62	127.27	-1.0933					14	12	2	0	0	0	0.027462	1	10096	10096		31.955	11.473	1	9568.8	+		3661	20734	2797	2807	4881	4881					0.03190938211707817
DDLDYLDI	8	Unmodified	_DDLDYLDI_					0	0	0		tr|A0A7D6VTY0|A0A7D6VTY0_9CLOTAminoacidadenylationdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18690PE=4SV=1	tr|A0A7D6VTY0|A0A7D6VTY0_9CLOTAminoacidadenylationdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18690PE=4SV=1	tr|A0A7D6VTY0|A0A7D6VTY0_9CLOTAminoacidadenylationdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18690PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	490.7748107910156	2	491.224205	980.433857	-1.2561	-0.00061705	2.5519	0.0012536	1.2958	0.00063651	491.22376124392315	91.52	0.40513	89.495	89.332	89.737	-2.0241					11	7	2	0	0	0	0.028476	1	5731	5731		71.378	23.462	1	19240			3662	35150	2798	2808	4882	4882					-0.05714228055512649
DDLFKLGEP	9	Unmodified	_DDLFKLGEP_					0	0	0		ENSG00000114554|ENST00000393409|PLXNA1;PLXNA3|p.L1776Rfs*78|1|0.25|ENSG00000130827|chrX:154471271-154471275|CTGCT/-|frameshift_variant;ENSG00000130827|ENST00000369682|PLXNA3;PLXNA3|p.I1452Rfs*8|1|0.29|ENSG00000130827|chrX:154468890-154468902|TTGATGCCATCAC/-|frameshift_variant	ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2845458984375	2	517.263665	1032.51278	-0.22143	-0.00011454	-2.2303	-0.0011537	-2.4518	-0.0012682	517.2642132056664	71.78	0.73643	71.78	71.389	72.125	0					21	17	2	0	0	0	0.027411	1	6944	6944		49.536	0	1	296770			3663	3028	2799	2809	4883	4883					-0.00217956030564892
DDLGGDSLI	9	Unmodified	_DDLGGDSLI_					0	0	0		tr|A0A7D6VTY0|A0A7D6VTY0_9CLOTAminoacidadenylationdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18690PE=4SV=1	tr|A0A7D6VTY0|A0A7D6VTY0_9CLOTAminoacidadenylationdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18690PE=4SV=1	tr|A0A7D6VTY0|A0A7D6VTY0_9CLOTAminoacidadenylationdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18690PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	452.71820068359375	2	452.716547	903.418542	-0.50667	-0.00022938	0.33746	0.00015277	-0.16921	-7.6604E-05	452.7165919225764	66.104	1.1081	66.104	65.79	66.898	0					76	27	4	0	0	0	0.043206	2	6119	6091;6119		123.99	16.331	1	14973000			3664	35150	2800	2810	4884;4885	4885					-0.03703094852698996
DDLGQPALEGI	11	Unmodified	_DDLGQPALEGI_					0	0	0		ENSG00000150893|ENST00000280481|FREM2;FREM2|p.E2213Vfs*37|1|0.04|ENSG00000150893|chr13:38851003-38851004|-/TGTTCTTCACGTCAGGAAATTCTGAA|frameshift_variant;nc|ENSG00000150893|Q5SZK8-2|FREM2	ENSG00000150893|ENST00000280481|FREM2	ENSG00000150893|ENST00000280481|FREM2	MULTI-SECPEP	OvCa9_classI_Rep3	3	564.32568359375	2	564.282586	1126.55062	-0.68041	-0.00038394	-0.48566	-0.00027405	-1.1661	-0.00065799	564.2824253591431	102.47	1.9361	100.95	100.37	102.31	-1.5211					52	36	3	0	0	0	0.022159	1	7043	7043		101.46	37.253	1	79848			3665	5522	2801	2811	4886	4886					-0.007594898357638158
DDLIGTIII	9	Unmodified	_DDLIGTIII_					0	0	0			REV__tr|A0A553SIU1|A0A553SIU1_NIACIUndecaprenyl/decaprenyl-phosphatealpha-N-acetylglucosaminyl1-phosphatetransferaseOS=NialliacirculansOX=1397GN=CEQ21_15515PE=4SV=1	REV__tr|A0A553SIU1|A0A553SIU1_NIACIUndecaprenyl/decaprenyl-phosphatealpha-N-acetylglucosaminyl1-phosphatetransferaseOS=NialliacirculansOX=1397GN=CEQ21_15515PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.78460693359375	2	486.784233	971.553913	-0.65795	-0.00032028	1.7634	0.00085839	1.1054	0.00053811	486.7849740245438	73.688	1.2894	71.201	70.727	72.016	-2.4873					78	25	4	0	0	0	0.29717	1	3590	3590		63.306	2.3343	1	611920	+		3666	29928	2802	2812	4887	4887					0.06699805008918247
DDLIPALALT	10	Unmodified	_DDLIPALALT_					0	0	0			REV__ENSG00000139626|ENST00000267082|ITGB7	REV__ENSG00000139626|ENST00000267082|ITGB7	MSMS	OvCa9_classI_Rep4_	4	521.2909545898438	2	521.294965	1040.57538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.44	1	125.02	124.52	125.52	-1.4143								0	0	0	0.14189	1	12036	12036		34.173	6.2903	1		+		3667	19623	2803	2813	4888	4888					0.05671190037583074
DDLIRETSI	9	Unmodified	_DDLIRETSI_					0	0	0			REV__nc|ENSG00000174197|Q8IWI9-3|MGA	REV__nc|ENSG00000174197|Q8IWI9-3|MGA	MULTI-MSMS	OvCa99_classI_Rep5	1	531.2781982421875	2	531.277303	1060.54005	2.2456	0.001193	-0.17977	-9.5509E-05	2.0658	0.0010975	531.2772169408953	82.501	1.6127	82.501	82.101	83.714	0					71	37	3	0	0	0	0.33652	1	8526	8526		58.782	0	1	16478000	+		3668	29011	2804	2814	4889	4889					0.012205275098040147
DDLIRETSI	9	Unmodified	_DDLIRETSI_					0	0	0			REV__nc|ENSG00000174197|Q8IWI9-3|MGA	REV__nc|ENSG00000174197|Q8IWI9-3|MGA	MULTI-MSMS	OvCa9_classI_Rep3	3	531.276123046875	2	531.277303	1060.54005	-0.89928	-0.00047777	0.4467	0.00023732	-0.45257	-0.00024044	531.2775331640955	85.76	2.0555	83.54	82.937	84.992	-2.2204					88	40	3	0	0	0	0.10363	1	5070	5070		96.19	16.478	1	1646200	+		3669	29011	2804	2814	4890	4890					0.012205275098040147
DDLLLSVVV	9	Unmodified	_DDLLLSVVV_					0	0	0			REV__INO80|p.E1263V|1|0.73|ENSG00000128908|chr15:40987135-40987135|T/A|missense_variant	REV__INO80|p.E1263V|1|0.73|ENSG00000128908|chr15:40987135-40987135|T/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	486.7849426269531	2	486.784233	971.553913	-0.65795	-0.00032028	1.7634	0.00085839	1.1054	0.00053811	486.7849740245438	73.688	1.2894	71.201	70.727	72.016	-2.4873					78	25	4	0	0	0	0.29717	1	3620	3620		63.306	2.3343	1	611920	+		3670	28306	2805	2815	4891	4891					0.06699805008906878
DDLLLVPI	8	Unmodified	_DDLLLVPI_					0	0	0			REV__ENSG00000125872|ENST00000378858|LRRN4	REV__ENSG00000125872|ENST00000378858|LRRN4	MULTI-MSMS	OvCa9_classI_Rep2	2	449.2690124511719	2	449.268219	896.521884	3.2258	0.0014492	-1.8722	-0.00084112	1.3536	0.00060812	449.26732371902864	112.43	2.5171	112.3	111.93	114.45	-0.12174					121	50	4	0	0	0	0.72134	1	10626	10626		39.021	1.993	1	1472600	+		3671	18753	2806	2816	4892	4892					0.06948437325752366
DDLLRGILF	9	Unmodified	_DDLLRGILF_					0	0	0			REV__ENST00000261866.11_1_15:44876214-44876271:-|nuORF	REV__ENST00000261866.11_1_15:44876214-44876271:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.7662353515625	2	531.303124	1060.5917	-0.36911	-0.00019611	-3.5649	-0.001894	-3.934	-0.0020902	531.3011958882768	39.089	0.58363	39.089	38.836	39.42	0					25	12	3	0	0	0	0.027462	1	2261	2261		37.159	8.0096	1	417790	+		3672	17646	2807	2817	4893	4893					0.06382315994369492
DDLLSLDIDDL	11	Unmodified	_DDLLSLDIDDL_					0	0	0			REV__tr|A0A553SUH4|A0A553SUH4_NIACICelldivisionproteinFtsZOS=NialliacirculansOX=1397GN=CEQ21_06945PE=4SV=1	REV__tr|A0A553SUH4|A0A553SUH4_NIACICelldivisionproteinFtsZOS=NialliacirculansOX=1397GN=CEQ21_06945PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	623.8099975585938	2	623.806091	1245.59763	1.2529	0.00078154	4.3451	0.0027105	5.598	0.0034921	623.8086073578006	133.04	1.7337	133.04	132.6	134.34	0					70	36	4	0	0	0	0.56391	1	15471	15471		47.96	3.8427	1	1236500	+		3673	31077	2808	2818	4894	4894					-0.015346750752769367
DDLLVDIEKD	10	Unmodified	_DDLLVDIEKD_					0	0	0		tr|A0A553SSB7|A0A553SSB7_NIACIDUF2750domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02790PE=4SV=1	tr|A0A553SSB7|A0A553SSB7_NIACIDUF2750domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02790PE=4SV=1	tr|A0A553SSB7|A0A553SSB7_NIACIDUF2750domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02790PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.8101806640625	2	587.795526	1173.5765	1.0928	0.00064237	-3.4581	-0.0020327	-2.3653	-0.0013903	588.2947402945324	123.54	0.27756	123.54	123.37	123.65	0					9	5	2	0	0	0	0.026849	1	14227	14227		25.574	2.5316	1	59919			3674	34355	2809	2819	4895	4895					-0.0033464038415331743
DDLNALQL	8	Unmodified	_DDLNALQL_					0	0	0		nc|ENSG00000082269|Q9P2D6-3|FAM135A;nc|ENSG00000082269|Q9P2D6-2|FAM135A;nc|ENSG00000082269|Q9P2D6-4|FAM135A;ENSG00000082269|ENST00000418814|FAM135A;FAM135A|p.W1194Cfs*23|1|0.12|ENSG00000082269|chr6:70526665-70526666|-/TTCCTGCT|frameshift_variant;ENST00000393299.6_1_6:71138108-71233862:+|nuORF	nc|ENSG00000082269|Q9P2D6-3|FAM135A	nc|ENSG00000082269|Q9P2D6-3|FAM135A	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.7626647949219	2	451.234907	900.455261	0.2455	0.00011078	0.22408	0.00010111	0.46958	0.00021189	451.2348378103697	51.272	0.67773	51.272	50.949	51.627	0					30	15	3	0	0	0	0.028476	1	3946	3946		57.811	8.3697	1	393350			3675	1675	2810	2820	4896	4896					0.001052017638471625
DDLNGPAV	8	Unmodified	_DDLNGPAV_					0	0	0		ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.1332092285156	2	400.692875	799.371197	1.0229	0.00040985	0.84818	0.00033986	1.871	0.00074971	400.6931351295	35.962	0.7845	35.962	35.52	36.304	0					25	16	2	0	0	0	0.028476	1	1819	1819		10.866	0	1	177970			3676	3379	2811	2821	4897	4897					-0.03651329333047215
DDLNRKLL	8	Unmodified	_DDLNRKLL_					0	0	0		nc|ENSG00000137831|Q9BZF9-2|UACA;ENSG00000137831|ENST00000322954|UACA	nc|ENSG00000137831|Q9BZF9-2|UACA	nc|ENSG00000137831|Q9BZF9-2|UACA	MULTI-MSMS	OvCa9_classI_Rep3	3	493.7862243652344	2	493.785099	985.555644	1.1397	0.00056278	2.6761	0.0013214	3.8158	0.0018842	493.786264516808	122.62	1.6631	121.59	121.32	122.98	-1.0286					75	31	3	0	0	0	0.62934	1	9446	9446		57.811	0	1	255040			3677	4627	2812	2822	4898	4898					0.06228858817530636
DDLQGLYRL	9	Unmodified	_DDLQGLYRL_					0	0	0			REV__ENST00000468170.1_1_22:24943827-24950959:-|nuORF	REV__ENST00000468170.1_1_22:24943827-24950959:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.314208984375	2	546.787838	1091.56112	1.8825	0.0010293	-0.31542	-0.00017247	1.5671	0.00085685	546.7874400380653	77.544	1.173	77.544	76.961	78.134	0					73	27	4	0	0	0	0.027426	1	7879	7879		63.306	5.495	1	1591400	+		3678	19583	2813	2823	4899	4899					0.019005376093446102
DDLQGLYRL	9	Unmodified	_DDLQGLYRL_					0	0	0			REV__ENST00000468170.1_1_22:24943827-24950959:-|nuORF	REV__ENST00000468170.1_1_22:24943827-24950959:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	546.787838	1091.56112	0.202	0.00011045	-0.65101	-0.00035596	-0.44901	-0.00024551	546.7877997520836	79.101	1.7592	77.361	76.615	78.375	-1.7398	-0.091551	-0.00018201	NaN	63.306	79	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87558	+		3679	19583	2813	2823							0.019005376093446102
DDLQRLKAKL	10	Unmodified	_DDLQRLKAKL_					0	0	0		ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	MULTI-SECPEP	OvCa99_classI_Rep5	1	599.8169555664062	2	600.358962	1198.70337	-0.064404	-3.8666E-05	-0.22647	-0.00013597	-0.29088	-0.00017463	600.358551069261	47.502	0.34461	47.502	47.336	47.681	0					13	7	2	0	0	0	0.027062	1	3428	3428		30.318	6.795	1	311550			3680	7513	2814	2824	4900	4900					0.11196750351518858
DDLRANYEAEL	11	Unmodified	_DDLRANYEAEL_					0	0	0		CON__A2VCT4	CON__A2VCT4	CON__A2VCT4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	435.87371826171875	3	436.87373	1307.59936	0.68217	0.00029802	-1.832	-0.00080036	-1.1499	-0.00050234	436.8729868749456	111.75	0.52699	110.24	110.11	110.63	-1.5111					14	9	2	0	0	0	0.025772	1	10302	10302		26.75	0	1	16755		+	3681	600	2815	2825	4901	4901					-0.042136212666719075
DDLTVEKMEL	10	Unmodified	_DDLTVEKMEL_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa99_classI_Rep5	1	596.7905883789062	2	596.791929	1191.5693	1.6214	0.00096762	-0.10828	-6.4621E-05	1.5131	0.00090299	596.7917906611348	93.297	0.95509	93.297	92.968	93.923	0					32	22	2	0	0	0	0.42082	1	10135	10135		65.465	3.7741	1	1198300	+		3682	28942;32737	2816	2826	4902	4902					-0.01881696256214127
DDLTVEKMEL	10	Unmodified	_DDLTVEKMEL_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	596.791929	1191.5693	1.6214	0.00096762	-0.10828	-6.4621E-05	1.5131	0.00090299	596.7917906611348	93.297	0.95509	93.297	92.968	93.923	0	0.11801	-0.00013798	NaN	65.465	32	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1198300	+		3683	28942;32737	2816	2826							-0.01881696256214127
DDLTVEKMEL	10	Unmodified	_DDLTVEKMEL_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	596.791929	1191.5693	-0.8095	-0.0004831	0.25725	0.00015352	-0.55226	-0.00032958	596.7917440996163	94.16	0.71761	93.061	92.644	93.361	-1.0995	-0.11801	0.00029831	NaN	65.465	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15555	+		3684	28942;32737	2816	2826							-0.01881696256214127
DDLYHGYYY	9	Unmodified	_DDLYHGYYY_					0	0	0			REV__nc|ENSG00000088836|Q8NBS3-5|SLC4A11	REV__nc|ENSG00000088836|Q8NBS3-5|SLC4A11	MULTI-MSMS	OvCa9_classI_Rep4_	4	604.7440185546875	2	604.748379	1207.4822	-5.8238	-0.0035219	2.1337	0.0012903	-3.6901	-0.0022316	604.7486166519102	162.46	1.2145	160.83	160.14	161.35	-1.6239					68	31	3	0	0	0	0.6959	1	16074	16074		19.36	0	1	19565	+		3685	17183	2817	2827	4903	4903					-0.11323734415600484
DDMISNDTL	9	Unmodified	_DDMISNDTL_					0	0	0		tr|A0A553SMJ4|A0A553SMJ4_NIACIPeptidaseM20domain-containingprotein2OS=NialliacirculansOX=1397GN=CEQ21_22730PE=3SV=1	tr|A0A553SMJ4|A0A553SMJ4_NIACIPeptidaseM20domain-containingprotein2OS=NialliacirculansOX=1397GN=CEQ21_22730PE=3SV=1	tr|A0A553SMJ4|A0A553SMJ4_NIACIPeptidaseM20domain-containingprotein2OS=NialliacirculansOX=1397GN=CEQ21_22730PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	511.8459777832031	2	512.218597	1022.42264	-0.94971	-0.00048646	1.6976	0.00086953	0.74787	0.00038307	512.219435601473	84.883	0.9376	82.622	82.357	83.295	-2.261					26	18	2	0	0	0	0.027452	1	4976	4976		49.536	5.1589	1	37410			3686	33839	2818	2828	4904	4904					-0.08767373421289903
DDNLKFKN	8	Unmodified	_DDNLKFKN_					0	0	0		nc|ENSG00000048649|Q96T23-2|RSF1;ENSG00000048649|ENST00000308488|RSF1;ENST00000534794.1_1_11:77413524-77475723:-|nuORF	nc|ENSG00000048649|Q96T23-2|RSF1	nc|ENSG00000048649|Q96T23-2|RSF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.2547302246094	2	497.253631	992.49271	-0.32498	-0.0001616	0.29852	0.00014844	-0.026461	-1.3158E-05	497.25375497628926	77.521	2.2937	74.705	74.391	76.685	-2.8165					83	47	2	0	0	0	0.45246	1	6251	6251		82.305	5.5309	1	1652300			3687	1158	2819	2829	4905	4905					-0.003837069705241447
DDNSGALE	8	Unmodified	_DDNSGALE_					0	0	0			REV__ENSG00000189127|ENST00000338682|ANKRD34B	REV__ENSG00000189127|ENST00000338682|ANKRD34B	MULTI-SECPEP	OvCa99_classI_Rep5	1	410.57818603515625	2	410.669597	819.324641	0.68538	0.00028147	0.78766	0.00032347	1.473	0.00060493	410.66977107392364	39.129	0.36031	39.129	38.927	39.287	0					10	7	2	0	0	0	0.028476	1	2292	2292		31.53	0	1	82761	+		3688	22763	2820	2830	4906	4906					-0.09224813954983802
DDNSISKLED	10	Unmodified	_DDNSISKLED_					0	0	0			REV__tr|A0A553SKS3|A0A553SKS3_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_19215PE=3SV=1	REV__tr|A0A553SKS3|A0A553SKS3_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_19215PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.3212890625	2	568.259308	1134.50406	1.8352	0.0010429	-1.3566	-0.00077092	0.47853	0.00027193	568.2580562829472	85.946	0.50101	83.3	83.192	83.693	-2.6463					10	9	2	0	0	0	0.02663	1	7278	7278		51.193	3.5354	1	11965	+		3689	30148	2821	2831	4907	4907					-0.05780974457707089
DDNYHIWIGNQ	11	Unmodified	_DDNYHIWIGNQ_					0	0	0			REV__ENST00000512692.6_1_4:141206332-141290472:-|nuORF	REV__ENST00000512692.6_1_4:141206332-141290472:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.67156982421875	3	458.873953	1373.60003	2.7226	0.0012493	0.88943	0.00040814	3.612	0.0016575	459.20885301081984	100.75	0.32594	100.75	100.53	100.86	0					11	7	2	0	0	0	0.026174	1	11150	11150		22.562	10.129	1	179270	+		3690	26971	2822	2832	4908	4908					-0.07182781826941209
DDPAPHKKV	9	Unmodified	_DDPAPHKKV_					0	0	0		RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.T5031Rfs*29|1|0.06|ENSG00000173821|chr17:80389261-80389262|-/TCGG|frameshift_variant;RNF213|p.G5057Vfs*8|1|0.18|ENSG00000173821|chr17:80389340-80389340|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.N2986Tfs*32|1|0.9|ENSG00000173821|chr17:80347289-80347289|G/-|frameshift_variant;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.3096618652344	2	503.769448	1005.52434	2.2642	0.0011406	-0.005314	-2.677E-06	2.2589	0.0011379	503.7693763334525	75.066	0.65446	75.066	74.676	75.33	0					24	15	2	0	0	0	0.027462	1	7435	7435		20.947	0	1	332360			3691	7416;32788	2823	2833	4909	4909					0.021802857834245515
DDPFSTGLPNI	11	Unmodified	_DDPFSTGLPNI_					0	0	0			REV__ENSG00000129925|ENST00000431232|PGAP6	REV__ENSG00000129925|ENST00000431232|PGAP6	MULTI-MSMS	OvCa99_classI_Rep5	1	588.2822875976562	2	588.282586	1174.55062	2.3346	0.0013734	-1.948	-0.001146	0.38656	0.00022741	588.281330675629	94.038	2.277	94.038	93.508	95.785	0					85	53	2	0	0	0	0.34051	1	10200	10200		65.465	14.13	1	1501400	+		3692	18912	2824	2834	4910	4910					-0.029674898357370694
DDPLLVLL	8	Unmodified	_DDPLLVLL_					0	0	0			REV__ENSG00000170542|ENST00000380698|SERPINB9	REV__ENSG00000170542|ENST00000380698|SERPINB9	MULTI-MSMS	OvCa9_classI_Rep3	3	449.2684631347656	2	449.268219	896.521884	0.9461	0.00042505	0.42185	0.00018952	1.3679	0.00061457	449.26835717612227	113.5	2.9115	112.42	112.15	115.06	-1.0753					133	57	4	0	0	0	0.64377	2	8369	8356;8369		54.765	7.9982	1	1514000	+		3693	21548	2825	2835	4911;4912	4912					0.06948437325775103
DDPLLVLL	8	Unmodified	_DDPLLVLL_					0	0	0			REV__ENSG00000170542|ENST00000380698|SERPINB9	REV__ENSG00000170542|ENST00000380698|SERPINB9	MULTI-MSMS	OvCa9_classI_Rep4_	4	449.2690124511719	2	449.268219	896.521884	1.103	0.00049553	0.22693	0.00010195	1.3299	0.00059748	449.26826553228875	113.95	2.2702	112.5	112.2	114.47	-1.4461					120	44	4	0	0	0	0.69415	1	10623	10623		44.531	3.9584	1	1786500	+		3694	21548	2825	2835	4913	4913					0.06948437325775103
DDPRLLKNI	9	Unmodified	_DDPRLLKNI_					0	0	0		nc|ENSG00000132932|Q9NTI2-3|ATP8A2;nc|ENSG00000132932|Q9NTI2-1|ATP8A2;ATP8A2-CRYL1|1|fusion;ENSG00000132932|ENST00000381655|ATP8A2	nc|ENSG00000132932|Q9NTI2-3|ATP8A2	nc|ENSG00000132932|Q9NTI2-3|ATP8A2	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.313232421875	2	542.31148	1082.60841	-0.04048	-2.1953E-05	3.1994	0.001735	3.1589	0.0017131	542.3131006318025	114.54	1.5851	113.14	112.78	114.37	-1.3977					41	30	2	0	0	0	0.44568	1	10644	10644		47.657	4.7931	1	142050			3695	134	2826	2836	4914	4914					0.07040816880339662
DDQDSVLL	8	Unmodified	_DDQDSVLL_					0	0	0		nc|ENSG00000124496|Q96PN7-2|TRERF1;nc|ENSG00000124496|Q96PN7-3|TRERF1;nc|ENSG00000124496|Q96PN7-4|TRERF1;nc|ENSG00000124496|Q96PN7-5|TRERF1;nc|ENSG00000124496|Q96PN7|TRERF1;ENSG00000124496|ENST00000695948|TRERF1	nc|ENSG00000124496|Q96PN7-2|TRERF1	nc|ENSG00000124496|Q96PN7-2|TRERF1	MULTI-MSMS	OvCa99_classI_Rep5	1	452.7177734375	2	452.716547	903.418542	-0.50667	-0.00022938	0.33746	0.00015277	-0.16921	-7.6604E-05	452.7165919225764	66.104	1.1081	66.104	65.79	66.898	0					76	27	4	0	0	0	0.2826	1	6148	6148		110.34	14.147	1	14973000			3696	3656	2827	2837	4915	4915					-0.03703094852698996
DDQDSVLLQ	9	Unmodified	_DDQDSVLLQ_					0	0	0		nc|ENSG00000124496|Q96PN7-2|TRERF1;nc|ENSG00000124496|Q96PN7-3|TRERF1;nc|ENSG00000124496|Q96PN7-4|TRERF1;nc|ENSG00000124496|Q96PN7-5|TRERF1;nc|ENSG00000124496|Q96PN7|TRERF1;ENSG00000124496|ENST00000695948|TRERF1	nc|ENSG00000124496|Q96PN7-2|TRERF1	nc|ENSG00000124496|Q96PN7-2|TRERF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7493896484375	2	516.745836	1031.47712	3.5754	0.0018475	0.26072	0.00013473	3.8361	0.0019823	516.7452055437096	132.67	0.63953	131.17	130.8	131.44	-1.5014					20	12	2	0	0	0	0.027461	1	12756	12756		25.574	10.241	1	18803			3697	3656	2828	2838	4916	4916					-0.03736038278225351
DDQKLGII	8	Unmodified	_DDQKLGII_					0	0	0			REV__tr|A0A7D6VST0|A0A7D6VST0_9CLOTStk1familyPASTAdomain-containingSer/ThrkinaseOS=ClostridiumintestinaleOX=36845GN=pknBPE=4SV=1	REV__tr|A0A7D6VST0|A0A7D6VST0_9CLOTStk1familyPASTAdomain-containingSer/ThrkinaseOS=ClostridiumintestinaleOX=36845GN=pknBPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	451.77020263671875	2	451.2531	900.491647	0.073505	3.3169E-05	-0.16311	-7.3605E-05	-0.089607	-4.0435E-05	451.25289568992764	108.8	1.132	107.6	107.22	108.35	-1.1978					32	21	2	0	0	0	0.028476	1	7781	7781		44.531	11.015	1	25422	+		3698	31536	2829	2839	4917	4917					0.03742078660570769
DDQKSVETL	9	Unmodified	_DDQKSVETL_					0	0	0			REV__KMT2A|p.P2471Lfs*35|1|0.08|ENSG00000118058|chr11:118503312-118503312|C/-|frameshift_variant;REV__nc|ENSG00000118058|Q03164-2|KMT2A	REV__KMT2A|p.P2471Lfs*35|1|0.08|ENSG00000118058|chr11:118503312-118503312|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	517.7529907226562	2	517.753661	1033.49277	-0.29917	-0.0001549	0.68214	0.00035318	0.38297	0.00019829	517.7538652131407	98.693	2.8202	97.8	96.974	99.794	-0.89305					121	56	5	0	0	0	0.19758	3	8980	8969;8980;8995		76.774	9.431	1	771510	+		3699	28341;18378	2830	2840	4918;4919;4920	4919					-0.022637517611883595
DDQKSVETL	9	Unmodified	_DDQKSVETL_					0	0	0			REV__KMT2A|p.P2471Lfs*35|1|0.08|ENSG00000118058|chr11:118503312-118503312|C/-|frameshift_variant;REV__nc|ENSG00000118058|Q03164-2|KMT2A	REV__KMT2A|p.P2471Lfs*35|1|0.08|ENSG00000118058|chr11:118503312-118503312|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	517.7543334960938	2	517.753661	1033.49277	0.13224	6.8467E-05	0.43586	0.00022567	0.5681	0.00029414	517.7536919411586	99.533	2.2055	97.848	97.009	99.214	-1.685					97	43	4	0	0	0	0.22621	2	6692	6692;6722		71.877	1.6012	1	863100	+		3700	28341;18378	2830	2840	4921;4922	4921					-0.022637517611883595
DDQKSVETL	9	Unmodified	_DDQKSVETL_					0	0	0			REV__KMT2A|p.P2471Lfs*35|1|0.08|ENSG00000118058|chr11:118503312-118503312|C/-|frameshift_variant;REV__nc|ENSG00000118058|Q03164-2|KMT2A	REV__KMT2A|p.P2471Lfs*35|1|0.08|ENSG00000118058|chr11:118503312-118503312|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.7540893554688	2	517.753661	1033.49277	-1.2976	-0.00067184	1.9974	0.0010342	0.69985	0.00036235	517.7545356388162	100.05	2.0169	97.722	96.899	98.916	-2.3253					102	39	4	0	0	0	0.27001	2	8932	8932;8956		66.429	2.222	1	963830	+		3701	28341;18378	2830	2840	4923;4924	4923					-0.022637517611883595
DDQLESYLD	9	Unmodified	_DDQLESYLD_					0	0	0			REV__tr|A0A553SSD4|A0A553SSD4_NIACITrmBfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02895PE=4SV=1	REV__tr|A0A553SSD4|A0A553SSD4_NIACITrmBfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02895PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.2404174804688	2	549.235301	1096.45605	2.3886	0.0013119	-1.9407	-0.0010659	0.44788	0.00024599	549.2340031708385	94.548	0.21426	94.548	94.433	94.648	0					7	4	2	0	0	0	0.027448	1	10294	10294		35.618	0	1	143080	+		3702	30825	2831	2841	4925	4925					-0.08832048377757928
DDREEEILE	9	Unmodified	_DDREEEILE_					0	0	0		TRIM52|p.V147_Y148delinsD|1|0.1|ENSG00000183718|chr5:181260372-181260374|AGA/-|inframe_deletion	TRIM52|p.V147_Y148delinsD|1|0.1|ENSG00000183718|chr5:181260372-181260374|AGA/-|inframe_deletion	TRIM52|p.V147_Y148delinsD|1|0.1|ENSG00000183718|chr5:181260372-181260374|AGA/-|inframe_deletion	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.3756713867188	2	574.259308	1146.50406	2.0498	0.0011771	-0.97359	-0.00055909	1.0763	0.00061805	574.7603282116038	102.89	0.55166	102.89	102.55	103.1	0					21	12	2	0	0	0	0.027418	1	11454	11454		68.787	0	1	198610			3703	36277	2832	2842	4926	4926					-0.06332974457700402
DDRGNVLIN	9	Unmodified	_DDRGNVLIN_					0	0	0			REV__nc|ENSG00000197748|Q8NDM7-3|CFAP43	REV__nc|ENSG00000197748|Q8NDM7-3|CFAP43	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.81353759765625	2	508.261988	1014.50942	-0.50325	-0.00025578	4.3123	0.0021918	3.809	0.001936	508.26405501315037	94.979	2.4339	93.879	92.906	95.34	-1.0995					89	48	3	0	0	0	0.027137	1	8697	8697		87.696	20.203	1	259770	+		3704	22948	2833	2843	4927	4927					0.0027479391542328813
DDRKELIT	8	Unmodified	_DDRKELIT_					0	0	0			REV__tr|A0A553SNT3|A0A553SNT3_NIACIRibonucleaseYOS=NialliacirculansOX=1397GN=rnyPE=3SV=1	REV__tr|A0A553SNT3|A0A553SNT3_NIACIRibonucleaseYOS=NialliacirculansOX=1397GN=rnyPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	494.29559326171875	2	495.266739	988.518924	-1.3724	-0.00067969	-0.7013	-0.00034733	-2.0737	-0.001027	495.26637232740535	92.25	1.3779	90.226	89.788	91.166	-2.0241					67	28	3	0	0	0	0.028476	1	5779	5779		36.447	0	1	391830	+		3705	30449	2834	2844	4928	4928					0.024205622009503713
DDRKRRKARRE	11	Unmodified	_DDRKRRKARRE_					0	0	0			REV__SNRNP200|p.E76D|1|0.22|ENSG00000144028|chr2:96303312-96303312|C/G|missense_variant	REV__SNRNP200|p.E76D|1|0.22|ENSG00000144028|chr2:96303312-96303312|C/G|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	495.95440673828125	3	495.953823	1484.83964	-0.8181	-0.00040574	1.8196	0.00090243	1.0015	0.00049669	495.95475171504705	33.923	0.57591	33.923	33.728	34.304	0					38	11	5	0	0	0	0.72458	1	1604	1604		21.032	2.0659	1	581120	+		3706	29378	2835	2845	4929	4929					0.11661257634750655
DDRPGGQER	9	Unmodified	_DDRPGGQER_					0	0	0		chr5:177337250-177337504|202|24.11|0.02|10.6|-|2|LMAN2,None|1	chr5:177337250-177337504|202|24.11|0.02|10.6|-|2|LMAN2,None|1	chr5:177337250-177337504|202|24.11|0.02|10.6|-|2|LMAN2,None|1	MULTI-SECPEP	OvCa9_classI_Rep3	3	514.2425537109375	2	515.239044	1028.46353	-0.55963	-0.00028834	-1.5041	-0.00077496	-2.0637	-0.0010633	515.73988662489	85.516	0.50111	83.295	83.035	83.536	-2.2204					18	9	3	0	0	0	0.027462	1	5030	5030		15.642	0	1	18333			3707	498	2836	2846	4930	4930					-0.04955851266799982
DDRRHDVD	8	Unmodified	_DDRRHDVD_					0	0	0			REV__ENSG00000137776|ENST00000380516|SLTM	REV__ENSG00000137776|ENST00000380516|SLTM	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.2618408203125	2	514.231219	1026.44788	1.3006	0.00066883	0.30935	0.00015908	1.61	0.0008279	514.231240365908	124.91	0.55183	124.91	124.56	125.11	0					20	11	3	0	0	0	0.028476	1	14446	14446		29.15	0.89528	1	202580	+		3708	19476	2837	2847	4931	4931					-0.06428137783859711
DDRSVLGTYI	10	Unmodified	_DDRSVLGTYI_					0	0	0		tr|A0A7D6VT21|A0A7D6VT21_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11480PE=4SV=1	tr|A0A7D6VT21|A0A7D6VT21_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11480PE=4SV=1	tr|A0A7D6VT21|A0A7D6VT21_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11480PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	569.7931518554688	2	569.790578	1137.5666	1.887	0.0010752	0.49599	0.00028261	2.3829	0.0013578	569.7907185787878	83.847	0.71577	83.847	83.588	84.303	0					43	16	4	0	0	0	0.41408	1	8753	8753		66.429	6.311	1	4194900			3709	35080	2838	2848	4932	4932					0.0033221640117062634
DDSFLERFNT	10	Unmodified	_DDSFLERFNT_					0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3;ENST00000474725.5_1_1:184690416-184706818:-|nuORF	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.2102966308594	3	415.19117	1242.55168	0.43078	0.00017886	1.2175	0.00050548	1.6482	0.00068434	415.19176602541813	47.574	0.38879	47.574	47.379	47.768	0					15	8	3	0	0	0	0.027145	1	3461	3461		8.7993	3.9132	1	185690			3710	3177	2839	2849	4933	4933					-0.05989275466845356
DDSIILNRL	9	Unmodified	_DDSIILNRL_					0	0	0			REV__tr|A0A553SPV0|A0A553SPV0_NIACIMagnesiumtransporterMgtEOS=NialliacirculansOX=1397GN=mgtEPE=3SV=1	REV__tr|A0A553SPV0|A0A553SPV0_NIACIMagnesiumtransporterMgtEOS=NialliacirculansOX=1397GN=mgtEPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.7980346679688	2	529.795663	1057.57677	-0.067477	-3.5749E-05	1.9921	0.0010554	1.9246	0.0010196	529.796535495674	101.77	1.0624	101.77	101.48	102.55	0					67	24	5	0	0	0	0.28934	1	11315	11315		64.207	0.901	1	10929000	+		3711	30572	2840	2850	4934	4934					0.05028824126384279
DDSPFHLDL	9	Unmodified	_DDSPFHLDL_					0	0	0			REV__TFE3|p.H509D|1|0.85|ENSG00000068323|chrX:49030361-49030361|G/C|missense_variant	REV__TFE3|p.H509D|1|0.85|ENSG00000068323|chrX:49030361-49030361|G/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7980346679688	2	529.743096	1057.47164	0.50351	0.00026673	-3.4896	-0.0018486	-2.9861	-0.0015819	529.7416673334585	101.44	0.50387	101.44	101.27	101.78	0					16	11	2	0	0	0	0.027426	1	11315	11315		44.117	14.947	1	166050	+		3712	29495	2841	2851	4935	4935					-0.05479717070033985
DDTARLITL	9	Unmodified	_DDTARLITL_					0	0	0			REV__nc|ENSG00000138231|Q9UK59-2|DBR1	REV__nc|ENSG00000138231|Q9UK59-2|DBR1	MULTI-MSMS	OvCa99_classI_Rep5	1	509.28399658203125	2	509.282389	1016.55022	2.392	0.0012182	-0.74242	-0.0003781	1.6496	0.00084011	509.2818925436544	76.15	0.53107	76.15	75.874	76.405	0					25	11	3	0	0	0	0.27001	1	7614	7614		66.429	9.9955	1	1278100	+		3713	19522	2842	2852	4936	4936					0.04261135235049096
DDTEEETQS	9	Unmodified	_DDTEEETQS_					0	0	0		ENSG00000173838|ENST00000311269|MARCHF10	ENSG00000173838|ENST00000311269|MARCHF10	ENSG00000173838|ENST00000311269|MARCHF10	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2859497070312	2	527.196373	1052.37819	-0.59149	-0.00031183	-2.3977	-0.0012641	-2.9892	-0.0015759	527.1957138200856	51.651	0.28574	51.651	51.461	51.747	0					10	6	3	0	0	0	0.027462	1	3976	3976		35.618	5.3006	1	268180			3714	7419	2843	2853	4937	4937					-0.14590106033779193
DDTELRYSSQY	11	Unmodified	_DDTELRYSSQY_					0	0	0		nc|ENSG00000257923|P39880-9|CUX1;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENST00000560541.5_1_7:101556607-101926379:+|nuORF;ENST00000487284.2_1_7:101917466-101926379:+|nuORF	nc|ENSG00000257923|P39880-9|CUX1	nc|ENSG00000257923|P39880-9|CUX1	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.78167724609375	3	459.537006	1375.58919	-0.46877	-0.00021542	-1.6195	-0.00074423	-2.0883	-0.00095965	459.536363121491	41.553	0.30543	41.553	41.375	41.681	0					8	6	2	0	0	0	0.025722	1	2593	2593		21.78	8.2725	1	45431			3715	13706	2844	2854	4938	4938					-0.08358228991892247
DDTIGDLKKL	10	Unmodified	_DDTIGDLKKL_					0	0	0		ACTL6A-UBL5|2|fusion;ACTL6A-UBL5|1|fusion;ENST00000589372.1_1_19:9939013-9939570:+|nuORF;ENST00000588595.5_1_19:9939136-9939352:+|nuORF;ENSG00000198258|ENST00000586895|UBL5;ENST00000588141.1_1_19:9939136-9939570:+|nuORF	ACTL6A-UBL5|2|fusion	ACTL6A-UBL5|2|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.791259765625	2	559.308603	1116.60265	1.6276	0.00091036	1.5318	0.00085678	3.1595	0.0017671	559.3082356911198	109.65	0.49098	109.65	109.46	109.95	0					15	10	3	0	0	0	0.02661	1	12424	12424		58.782	3.2778	1	136020			3716	22	2845	2855	4939	4939					0.04901673578001464
DDTNQSATLN	10	Unmodified	_DDTNQSATLN_					0	0	0		AFF1-UBR5|1|fusion;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	AFF1-UBR5|1|fusion	AFF1-UBR5|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.8272705078125	2	539.736	1077.45745	-0.64816	-0.00034984	-2.1424	-0.0011563	-2.7905	-0.0015062	539.7347698730049	92.75	0.6185	90.788	90.56	91.178	-1.9617					21	12	3	0	0	0	0.026494	1	5944	5944		67.494	0	1	25475			3717	45	2846	2856	4940	4940					-0.07818414288976783
DDTPSVSALL	10	Unmodified	_DDTPSVSALL_					0	0	0		tr|A0A553SP23|A0A553SP23_NIACIUPF0122proteinCEQ21_25635OS=NialliacirculansOX=1397GN=CEQ21_25635PE=3SV=1	tr|A0A553SP23|A0A553SP23_NIACIUPF0122proteinCEQ21_25635OS=NialliacirculansOX=1397GN=CEQ21_25635PE=3SV=1	tr|A0A553SP23|A0A553SP23_NIACIUPF0122proteinCEQ21_25635OS=NialliacirculansOX=1397GN=CEQ21_25635PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.7964782714844	2	509.258579	1016.50261	0.15518	7.9028E-05	-4.1295	-0.002103	-3.9743	-0.002024	509.2568334380936	111.76	0.68481	110.25	109.84	110.53	-1.5111					21	12	3	0	0	0	0.026582	1	10311	10311		42.396	0	1	17106			3718	33995	2847	2857	4941	4941					-0.004985637557979317
DDTTLKFH	8	Unmodified	_DDTTLKFH_					0	0	0		ENSG00000124227|ENST00000457363|ANKRD60	ENSG00000124227|ENST00000457363|ANKRD60	ENSG00000124227|ENST00000457363|ANKRD60	MULTI-SECPEP	OvCa9_classI_Rep4_	4	489.2937316894531	2	488.740357	975.46616	0.43277	0.00021151	2.6284	0.0012846	3.0612	0.0014961	488.74101768392467	60.619	0.54748	57.189	56.996	57.544	-3.43					14	10	2	0	0	0	0.028476	1	4143	4143		25.45	5.4534	1	11191			3719	3638	2848	2858	4942	4942					-0.022553958618573233
DDVAVRFGI	9	Unmodified	_DDVAVRFGI_					0	0	0			REV__tr|A0A553SQ22|A0A553SQ22_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16765PE=4SV=1	REV__tr|A0A553SQ22|A0A553SQ22_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16765PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.7562255859375	2	496.263999	990.513445	-0.28434	-0.00014111	2.3568	0.0011696	2.0724	0.0010285	496.26504198889864	56.139	0.70787	52.845	52.412	53.12	-3.2944					25	13	2	0	0	0	0.027455	1	3561	3561		42.396	11.892	1	1078400	+		3720	30599	2849	2859	4943	4943					0.017808834091624703
DDVFVHVPN	9	Unmodified	_DDVFVHVPN_					0	0	0		ENSG00000176383|ENST00000324189|B3GNT4;nc|ENSG00000176383|Q9C0J1-2|B3GNT4	ENSG00000176383|ENST00000324189|B3GNT4	ENSG00000176383|ENST00000324189|B3GNT4	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.3038330078125	2	521.253631	1040.49271	2.0878	0.0010883	2.095	0.001092	4.1829	0.0021803	521.2539348383557	99.389	0.66195	99.389	99.115	99.777	0					27	15	3	0	0	0	0.027455	1	10992	10992		42.396	5.237	1	1442900			3721	7602	2850	2860	4944	4944					-0.025917069705201357
DDVGKACNKF	10	Unmodified	_DDVGKACNKF_					0	0	0			REV__ENSG00000150316|ENST00000279839|CWC15	REV__ENSG00000150316|ENST00000279839|CWC15	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.833251953125	2	548.758223	1095.50189	3.531	0.0019377	-3.7439	-0.0020545	-0.21284	-0.0001168	548.7561052663143	132.71	0.83301	131.21	131	131.83	-1.5015					24	16	2	0	0	0	0.027174	1	12855	12855		9.7057	0	1	23195	+		3722	20185	2851	2861	4945	4945					-0.0420368167651759
DDVILITKT	9	Unmodified	_DDVILITKT_					0	0	0			REV__tr|A0A553SPS5|A0A553SPS5_NIACIResponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_26930PE=4SV=1	REV__tr|A0A553SPS5|A0A553SPS5_NIACIResponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_26930PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.3024597167969	2	509.294965	1016.57538	-0.7124	-0.00036282	0.1387	7.064E-05	-0.5737	-0.00029218	509.295094941001	89.478	1.2151	87.383	87.029	88.244	-2.0956					40	23	2	0	0	0	0.027462	1	5460	5460		40.778	15.204	1	200070	+		3723	30563	2852	2862	4946	4946					0.06775190037626544
DDVILITKT	9	Unmodified	_DDVILITKT_					0	0	0			REV__tr|A0A553SPS5|A0A553SPS5_NIACIResponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_26930PE=4SV=1	REV__tr|A0A553SPS5|A0A553SPS5_NIACIResponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_26930PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	509.294965	1016.57538	1.5843	0.00080688	-2.018	-0.0010278	-0.43374	-0.0002209	509.2940534261398	89.077	1.331	87.71	87.086	88.417	-1.3676	0.1369	-0.0013629	NaN	40.778	47	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119800	+		3724	30563	2852	2862							0.06775190037626544
DDVILITKT	9	Unmodified	_DDVILITKT_					0	0	0			REV__tr|A0A553SPS5|A0A553SPS5_NIACIResponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_26930PE=4SV=1	REV__tr|A0A553SPS5|A0A553SPS5_NIACIResponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_26930PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	509.294965	1016.57538	0.091994	4.6852E-05	-0.35887	-0.00018277	-0.26688	-0.00013592	509.29491041338383	90.201	1.0167	87.626	87.348	88.365	-2.575	0.053285	0.00032711	NaN	40.778	35	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193030	+		3725	30563	2852	2862							0.06775190037626544
DDYAAVVWRP	10	Unmodified	_DDYAAVVWRP_					0	0	0		ENSG00000167123|ENST00000372838|CERCAM;CERCAM|p.D282Tfs*9|1|0.18|ENSG00000167123|chr9:128428377-128428377|A/-|frameshift_variant;nc|ENSG00000167123|Q5T4B2-2|CERCAM;ENST00000483737.1_1_9:131185198-131185261:+|nuORF	ENSG00000167123|ENST00000372838|CERCAM	ENSG00000167123|ENST00000372838|CERCAM	MULTI-MSMS	OvCa9_classI_Rep4_	4	596.29541015625	2	596.293288	1190.57202	-0.30043	-0.00017914	1.8426	0.0010988	1.5422	0.00091962	596.294021178013	70.357	1.9965	66.876	66.201	68.198	-3.4812					123	40	4	0	0	0	0.65434	1	5307	5307		35.618	3.6634	1	1128500			3726	6760	2853	2863	4947	4947					-0.015640600163806084
DDYVLVKNI	9	Unmodified	_DDYVLVKNI_					0	0	0		ENST00000533632.5_1_11:118894278-118894506:+|nuORF	ENST00000533632.5_1_11:118894278-118894506:+|nuORF	ENST00000533632.5_1_11:118894278-118894506:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.2735595703125	2	539.792589	1077.57063	2.7047	0.00146	-0.13133	-7.0893E-05	2.5734	0.0013891	539.792367109906	97.901	0.46717	97.901	97.654	98.121	0					22	10	3	0	0	0	0.027426	1	10793	10793		39.253	12.56	1	916500			3727	13343	2854	2864	4948	4948					0.03494305894855643
DDYVLVKNI	9	Unmodified	_DDYVLVKNI_					0	0	0		ENST00000533632.5_1_11:118894278-118894506:+|nuORF	ENST00000533632.5_1_11:118894278-118894506:+|nuORF	ENST00000533632.5_1_11:118894278-118894506:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	539.792589	1077.57063	-1.0985	-0.00059296	5.416	0.0029235	4.3175	0.0023306	539.7935330811512	98.476	1.0893	97.583	97.216	98.305	-0.89305	-0.070623	0.0045122	NaN	39.253	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24265			3728	13343	2854	2864							0.03494305894855643
DDYVLVKNI	9	Unmodified	_DDYVLVKNI_					0	0	0		ENST00000533632.5_1_11:118894278-118894506:+|nuORF	ENST00000533632.5_1_11:118894278-118894506:+|nuORF	ENST00000533632.5_1_11:118894278-118894506:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	539.792589	1077.57063	0.43177	0.00023307	1.028	0.00055488	1.4597	0.00078795	539.79221595315	99.269	0.92447	97.584	97.373	98.297	-1.685	-0.069795	-0.00022507	NaN	39.253	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22333			3729	13343	2854	2864							0.03494305894855643
DDYVLVKNI	9	Unmodified	_DDYVLVKNI_					0	0	0		ENST00000533632.5_1_11:118894278-118894506:+|nuORF	ENST00000533632.5_1_11:118894278-118894506:+|nuORF	ENST00000533632.5_1_11:118894278-118894506:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	539.792589	1077.57063	-1.6902	-0.00091237	5.8916	0.0031803	4.2014	0.0022679	540.2997805821677	99.871	1.0714	97.546	97.263	98.335	-2.3253	-0.1076	0.0050257	NaN	39.253	36	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29590			3730	13343	2854	2864							0.03494305894855643
DEAAVRLVL	9	Unmodified	_DEAAVRLVL_					0	0	0			REV__ENSG00000135355|ENST00000369352|GJA10	REV__ENSG00000135355|ENST00000369352|GJA10	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.3075866699219	2	493.287474	984.560395	2.0979	0.0010349	1.1067	0.00054595	3.2046	0.0015808	493.28772378707737	95.097	0.42332	95.097	94.905	95.328	0					14	9	2	0	0	0	0.027433	1	10355	10355		34.173	8.5985	1	303170	+		3731	19278	2855	2865	4949	4949					0.06749742960278127
DEACFPAF	8	Unmodified	_DEACFPAF_					0	0	0			REV__nc|ENSG00000198901|O43663-3|PRC1	REV__nc|ENSG00000198901|O43663-3|PRC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	449.5454406738281	2	450.183829	898.353105	0.049389	2.2234E-05	-3.6577	-0.0016466	-3.6083	-0.0016244	450.18190787754065	56.062	0.20565	56.062	55.888	56.094	0					6	4	2	0	0	0	0.028476	1	4627	4627		8.8223	0	1	76541	+		3732	23090	2856	2866	4950	4950					-0.10013787579407563
DEAFTAKVF	9	Unmodified	_DEAFTAKVF_					0	0	0			REV__ENST00000526194.5_1_1:21560049-21616919:-|nuORF	REV__ENST00000526194.5_1_1:21560049-21616919:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	514.2581787109375	2	514.258382	1026.50221	1.597	0.00082126	-0.44667	-0.00022971	1.1503	0.00059155	514.2579006061186	125.6	0.37522	125.6	125.25	125.62	0					16	9	2	0	0	0	0.33652	1	14501	14501		58.782	3.2778	1	173090	+		3733	16343	2857	2867	4951	4951					-0.009979386849863658
DEALNKDKI	9	Unmodified	_DEALNKDKI_					0	0	0		ENST00000538136.1_1_2:48011218-48025765:+|nuORF;nc|ENSG00000116062|P52701-2|MSH6;ENSG00000116062|ENST00000234420|MSH6	ENST00000538136.1_1_2:48011218-48025765:+|nuORF	ENST00000538136.1_1_2:48011218-48025765:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.3092041015625	2	523.279846	1044.54514	-0.067931	-3.5547E-05	0.9272	0.00048518	0.85927	0.00044964	523.2801940006543	103.37	0.58905	103.37	103.14	103.73	0					32	13	3	0	0	0	0.027426	1	11538	11538		56.721	0	1	1660300			3734	3152	2858	2868	4952	4952					0.02464831372435583
DEANRVSLV	9	Unmodified	_DEANRVSLV_					0	0	0			REV__tr|A0A7D6ZVX7|A0A7D6ZVX7_9CLOT2-oxoacid:acceptoroxidoreductasesubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_15590PE=4SV=1	REV__tr|A0A7D6ZVX7|A0A7D6ZVX7_9CLOT2-oxoacid:acceptoroxidoreductasesubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_15590PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.7944641113281	2	501.764363	1001.51417	-0.44192	-0.00022174	4.3448	0.0021801	3.9029	0.0019583	501.7663987105033	109.04	0.69214	108.81	108.52	109.21	-0.22498					23	13	2	0	0	0	0.027455	1	10199	10199		51.335	7.2187	1	39605	+		3735	32267	2859	2869	4953	4953					0.013476780581981984
DEAPKWDGGP	10	Unmodified	_DEAPKWDGGP_					0	0	0			REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.7638549804688	2	536.240721	1070.46689	-1.2448	-0.00066752	-2.24	-0.0012012	-3.4849	-0.0018687	536.2391436025359	79.584	0.37727	76.832	76.657	77.034	-2.7514					10	7	2	0	0	0	0.026849	1	6467	6467		32.812	0	1	32597	+		3736	19513	2860	2870	4954	4954					-0.06552601212820264
DEATIRLAN	9	Unmodified	_DEATIRLAN_					0	0	0		SACS|p.V3288Tfs*46|1|0.07|ENSG00000151835|chr13:23334014-23334015|-/TGAAGGGATACTTTTTGTAAGTACGT|frameshift_variant;ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.L2402Tfs*7|1|0.04|ENSG00000151835|chr13:23336672-23336673|-/T|frameshift_variant	SACS|p.V3288Tfs*46|1|0.07|ENSG00000151835|chr13:23334014-23334015|-/TGAAGGGATACTTTTTGTAAGTACGT|frameshift_variant	SACS|p.V3288Tfs*46|1|0.07|ENSG00000151835|chr13:23334014-23334015|-/TGAAGGGATACTTTTTGTAAGTACGT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	502.2882080078125	2	501.764363	1001.51417	-1.4215	-0.00071325	-0.9959	-0.00049971	-2.4174	-0.001213	501.76450470153367	84.999	0.19254	82.779	82.648	82.84	-2.2204					5	3	2	0	0	0	0.027433	1	4952	4952		54.776	21.964	1	7792.9			3737	5587	2861	2871	4955	4955					0.013476780581868297
DEAVVVSKT	9	Unmodified	_DEAVVVSKT_					0	0	0			REV__ENSG00000186297|ENST00000335625|GABRA5	REV__ENSG00000186297|ENST00000335625|GABRA5	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.2727966308594	2	474.25584	946.497126	0.14965	7.0973E-05	-0.10827	-5.1348E-05	0.041381	1.9625E-05	474.25575054793717	57.038	0.47582	57.038	56.788	57.264	0					22	10	3	0	0	0	0.027433	1	4759	4759		45.972	15.469	1	364730	+		3738	22572	2862	2872	4956	4956					0.021737574523854164
DEAYDVYNM	9	Unmodified	_DEAYDVYNM_					0	0	0		nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3	nc|ENSG00000139734|Q9NSV4-2|DIAPH3	nc|ENSG00000139734|Q9NSV4-2|DIAPH3	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.28955078125	2	560.218597	1118.42264	1.9844	0.0011117	3.0977	0.0017354	5.0822	0.0028471	560.220272711035	111.95	0.6906	111.95	111.7	112.39	0					29	14	3	0	0	0	0.027462	1	12760	12760		31.955	16.313	1	599990			3739	4802	2863	2873	4957	4957					-0.13183373421315991
DECCNSMKEI	10	Carbamidomethyl (C)	_DEC(Carbamidomethyl (C))CNSMKEI_	DEC(0.5)C(0.5)NSMKEI		DEC(0)C(0)NSMKEI		0	1	0			REV__ENSG00000175893|ENST00000380916|ZDHHC21	REV__ENSG00000175893|ENST00000380916|ZDHHC21	MULTI-MSMS	OvCa9_classI_Rep3	3	614.7392578125	2	614.735773	1227.45699	1.6599	0.0010204	2.8052	0.0017244	4.465	0.0027448	614.7381120866673	119.13	2.1232	118.1	117.73	119.86	-1.0271					132	42	5	0	0	0	0.45822	1	9004	9004		60.118	10.677	2	919520	+		3740	21920	2864	2874	4958	4958	248;249				-0.1476361659633767
DECIEIGVKL	10	Unmodified	_DECIEIGVKL_					0	0	0			REV__tr|A0A7D6ZIZ6|A0A7D6ZIZ6_9CLOTGlutamine-dependentNAD(+)synthetaseOS=ClostridiumintestinaleOX=36845GN=nadEPE=3SV=1	REV__tr|A0A7D6ZIZ6|A0A7D6ZIZ6_9CLOTGlutamine-dependentNAD(+)synthetaseOS=ClostridiumintestinaleOX=36845GN=nadEPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	560.3115844726562	2	559.791732	1117.56891	0.73154	0.00040951	0.34575	0.00019355	1.0773	0.00060306	560.2926285973688	83.15	0.4876	80.468	80.173	80.66	-2.6829					12	9	2	0	0	0	0.026891	1	6911	6911		31.53	8.0071	1	28802	+		3741	32073	2865	2875	4959	4959					0.01482928814607476
DECLHSVHKAT	11	Unmodified	_DECLHSVHKAT_					0	0	0		ENST00000608346.1_1_3:122135093-122151636:+|nuORF;ENST00000609469.5_1_3:122135093-122161595:+|nuORF	ENST00000608346.1_1_3:122135093-122151636:+|nuORF	ENST00000608346.1_1_3:122135093-122151636:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	620.2947998046875	2	620.292962	1238.57137	0.77186	0.00047878	0.66987	0.00041552	1.4417	0.00089429	620.2935744245162	150.67	0.70197	150.67	150.39	151.09	0					30	13	3	0	0	0	0.68757	1	17643	17643		33.922	2.2874	1	123990			3742	14293	2866	2876	4960	4960					-0.03837222727747758
DEDDLYDEA	9	Unmodified	_DEDDLYDEA_					0	0	0			REV__ENSG00000134996|ENST00000346234|OSTF1	REV__ENSG00000134996|ENST00000346234|OSTF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.7216186523438	2	542.701291	1083.38803	-2.5486	-0.0013831	3.0924	0.0016782	0.54381	0.00029513	542.7026856312629	49.263	0.20965	46.121	45.99	46.2	-3.1416					5	3	2	0	0	0	0.027462	1	2758	2758		23.042	11.531	1	5625.8	+		3743	19246	2867	2877	4961	4961					-0.15032918028418862
DEDLLTIKD	9	Unmodified	_DEDLLTIKD_					0	0	0			REV__tr|A0A7D6VU10|A0A7D6VU10_9CLOTUPF0473proteinHZF06_09865OS=ClostridiumintestinaleOX=36845GN=HZF06_09865PE=3SV=1	REV__tr|A0A7D6VU10|A0A7D6VU10_9CLOTUPF0473proteinHZF06_09865OS=ClostridiumintestinaleOX=36845GN=HZF06_09865PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.8064575195312	2	531.271687	1060.52882	-1.2317	-0.00065437	-1.1977	-0.0006363	-2.4294	-0.0012907	531.2711646250874	94.403	0.89273	91.935	91.618	92.511	-2.4685					26	17	3	0	0	0	0.027462	1	8242	8242		39.253	13.803	1	33263	+		3744	31645	2868	2878	4962	4962					0.0009770541569196212
DEDLLTIKD	9	Unmodified	_DEDLLTIKD_					0	0	0			REV__tr|A0A7D6VU10|A0A7D6VU10_9CLOTUPF0473proteinHZF06_09865OS=ClostridiumintestinaleOX=36845GN=HZF06_09865PE=3SV=1	REV__tr|A0A7D6VU10|A0A7D6VU10_9CLOTUPF0473proteinHZF06_09865OS=ClostridiumintestinaleOX=36845GN=HZF06_09865PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	531.271687	1060.52882	-0.69603	-0.00036978	-1.4825	-0.00078762	-2.1786	-0.0011574	531.2710393730123	93.03	0.92067	91.862	91.55	92.471	-1.168	-0.036502	-0.0001564	NaN	36.447	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29697	+		3745	31645	2868	2878							0.0009770541569196212
DEDNQPLAGL	10	Unmodified	_DEDNQPLAGL_					0	0	0		ENSG00000072415|ENST00000261681|PALS1;nc|ENSG00000072415|Q8N3R9-2|PALS1;RAD51B-MPP5|1|fusion	ENSG00000072415|ENST00000261681|PALS1	ENSG00000072415|ENST00000261681|PALS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.2506103515625	2	536.251286	1070.48802	-1.5791	-0.00084681	-0.026446	-1.4182E-05	-1.6056	-0.00086099	536.2511641448887	120.77	1.4863	119.43	119.13	120.62	-1.3479					72	28	3	0	0	0	0.37436	1	11361	11361		71.877	2.2498	1	361250			3746	1472	2869	2879	4963	4963					-0.04440635903938528
DEDQKDELP	9	Unmodified	_DEDQKDELP_					0	0	0			REV__nc|ENSG00000180263|Q6ZV73-2|FGD6	REV__nc|ENSG00000180263|Q6ZV73-2|FGD6	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.8028564453125	2	544.740751	1087.46695	0.31798	0.00017322	0.6665	0.00036307	0.98448	0.00053629	544.7410301501081	72.632	0.66219	72.632	72.412	73.074	0					28	16	3	0	0	0	0.027462	1	7060	7060		12.207	2.5012	1	901210	+		3747	22166	2870	2880	4964	4964					-0.07328646003475114
DEDRLNLAI	9	Unmodified	_DEDRLNLAI_					0	0	0			REV__tr|A0A7D6VPS3|A0A7D6VPS3_9CLOTDNAgyrasesubunitAOS=ClostridiumintestinaleOX=36845GN=gyrAPE=3SV=1	REV__tr|A0A7D6VPS3|A0A7D6VPS3_9CLOTDNAgyrasesubunitAOS=ClostridiumintestinaleOX=36845GN=gyrAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.7789306640625	2	529.77747	1057.54039	0.026488	1.4033E-05	2.3717	0.0012565	2.3982	0.0012705	529.7792588611064	67.435	0.94106	67.435	66.939	67.88	0					42	23	4	0	0	0	0.27001	1	6305	6305		66.429	2.222	1	3826200	+		3748	31271	2871	2881	4965	4965					0.01391947229649304
DEDSNLSPSPL	11	Unmodified	_DEDSNLSPSPL_					0	0	0		ENSG00000115274|ENST00000233331|INO80B	ENSG00000115274|ENST00000233331|INO80B	ENSG00000115274|ENST00000233331|INO80B	MULTI-MSMS	OvCa99_classI_Rep5	1	587.2684936523438	2	587.267133	1172.51971	0.79401	0.0004663	1.9443	0.0011418	2.7383	0.0016081	587.2682027762017	139.74	0.80136	139.74	139.37	140.17	0					38	16	3	0	0	0	0.63561	1	16328	16328		41.427	2.6205	1	287030			3749	3080	2872	2882	4966	4966					-0.059646879406273
DEDVDNDNL	9	Unmodified	_DEDVDNDNL_					0	0	0		tr|A0A553SJ82|A0A553SJ82_NIACITandem-95repeatproteinOS=NialliacirculansOX=1397GN=CEQ21_16265PE=4SV=1	tr|A0A553SJ82|A0A553SJ82_NIACITandem-95repeatproteinOS=NialliacirculansOX=1397GN=CEQ21_16265PE=4SV=1	tr|A0A553SJ82|A0A553SJ82_NIACITandem-95repeatproteinOS=NialliacirculansOX=1397GN=CEQ21_16265PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.758544921875	2	524.706908	1047.39926	-1.0744	-0.00056374	-0.26185	-0.00013739	-1.3362	-0.00070113	524.7069603158106	49.529	0.43811	49.529	49.33	49.768	0					11	9	2	0	0	0	0.027462	1	3730	3730		25.574	0	1	74503			3750	33474	2873	2883	4967	4967					-0.12254095934258658
DEDWVRNEL	9	Unmodified	_DEDWVRNEL_					0	0	0		nc|ENSG00000136869|O00206-2|TLR4;ENSG00000136869|ENST00000355622|TLR4;nc|ENSG00000136869|O00206-3|TLR4	nc|ENSG00000136869|O00206-2|TLR4	nc|ENSG00000136869|O00206-2|TLR4	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.3515625	2	588.27001	1174.52547	-0.68536	-0.00040318	-2.6047	-0.0015323	-3.29	-0.0019354	588.2686011673107	39.54	0.33704	39.54	39.332	39.669	0					11	7	2	0	0	0	0.027462	1	2317	2317		42.396	1.8235	1	118590			3751	4525	2874	2884	4968	4968					-0.054815446383372546
DEEEDLRTE	9	Unmodified	_DEEEDLRTE_					0	0	0		ENSG00000123572|ENST00000243300|NRK;nc|ENSG00000123572|Q7Z2Y5-3|NRK	ENSG00000123572|ENST00000243300|NRK	ENSG00000123572|ENST00000243300|NRK	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.8658447265625	2	568.241115	1134.46768	-0.66118	-0.00037571	0.26746	0.00015198	-0.39372	-0.00022373	568.2413473315827	41.905	0.34378	41.905	41.724	42.068	0					12	7	2	0	0	0	0.027462	1	2660	2660		34.173	9.0466	1	57277			3752	3606	2875	2885	4969	4969					-0.09417851354419327
DEEEEHGGHK	10	Unmodified	_DEEEEHGGHK_					0	0	0		ENSG00000132680|ENST00000368321|KHDC4;ENST00000368320.7_1_1:155883914-155884172:-|nuORF	ENSG00000132680|ENST00000368321|KHDC4	ENSG00000132680|ENST00000368321|KHDC4	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.8016357421875	2	583.739074	1165.46359	-1.0497	-0.00061277	3.1748	0.0018532	2.1251	0.0012405	583.7407812933801	49.571	0.17282	49.571	49.462	49.635	0					6	3	2	0	0	0	0.026553	1	3718	3718		56.721	1.9447	1	68296			3753	4162	2876	2886	4970	4970					-0.11251896057456179
DEEEKRIIQ	9	Unmodified	_DEEEKRIIQ_					0	0	0		tr|A0A553SGV7|A0A553SGV7_NIACI5-methylthioadenosine/S-adenosylhomocysteinedeaminaseOS=NialliacirculansOX=1397GN=mtaDPE=3SV=1	tr|A0A553SGV7|A0A553SGV7_NIACI5-methylthioadenosine/S-adenosylhomocysteinedeaminaseOS=NialliacirculansOX=1397GN=mtaDPE=3SV=1	tr|A0A553SGV7|A0A553SGV7_NIACI5-methylthioadenosine/S-adenosylhomocysteinedeaminaseOS=NialliacirculansOX=1397GN=mtaDPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	580.3024291992188	2	580.30131	1158.58807	-1.0562	-0.00061289	0.88145	0.00051151	-0.17471	-0.00010139	580.3018455410187	53.526	1.1727	53.526	52.999	54.172	0					87	27	7	0	0	0	0.22961	1	4285	4285		71.296	7.7619	1	6165400			3754	33201	2877	2887	4971	4971					0.0151160142986555
DEEELLDPL	9	Unmodified	_DEEELLDPL_					0	0	0			REV__ENST00000527829.1_1_11:47435993-47436711:+|nuORF	REV__ENST00000527829.1_1_11:47435993-47436711:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.7997436523438	2	536.755869	1071.49719	2.0986	0.0011264	1.3766	0.00073888	3.4751	0.0018653	536.7565692688527	76.521	0.84662	76.521	76.076	76.922	0					51	20	4	0	0	0	0.027462	1	7649	7649		45.952	1.8352	1	1287200	+		3755	21137	2878	2888	4972	4972					-0.03570287338266098
DEEGYRKL	8	Unmodified	_DEEGYRKL_					0	0	0		nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;SMARCA4|p.E664Gfs*44|1|0.16|ENSG00000127616|chr19:11003386-11003387|-/GTCAGGAGATCGAGACTGTCTTGGCTAACAC|frameshift_variant;SMARCA4|p.I1250Tfs*41|1|0.04|ENSG00000127616|chr19:11033492-11033492|T/-|frameshift_variant	nc|ENSG00000080503|P51531-2|SMARCA2	nc|ENSG00000080503|P51531-2|SMARCA2	MULTI-SECPEP	OvCa9_classI_Rep2	2	504.79437255859375	2	505.251089	1008.48762	0.35082	0.00017725	-0.22798	-0.00011519	0.12284	6.2065E-05	505.250718592414	66.167	1.241	63.471	63.071	64.313	-2.6958					29	24	2	0	0	0	0.028476	1	5107	5107		71.296	0	1	23499			3756	1636	2879	2889	4973	4973					-0.016280108331443444
DEEGYRKL	8	Unmodified	_DEEGYRKL_					0	0	0		nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;SMARCA4|p.E664Gfs*44|1|0.16|ENSG00000127616|chr19:11003386-11003387|-/GTCAGGAGATCGAGACTGTCTTGGCTAACAC|frameshift_variant;SMARCA4|p.I1250Tfs*41|1|0.04|ENSG00000127616|chr19:11033492-11033492|T/-|frameshift_variant	nc|ENSG00000080503|P51531-2|SMARCA2	nc|ENSG00000080503|P51531-2|SMARCA2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	504.7966003417969	2	505.251089	1008.48762	-0.04798	-2.4242E-05	-0.15611	-7.8874E-05	-0.20409	-0.00010312	505.25092800092267	66.859	1.0377	63.369	63.099	64.136	-3.4902					38	20	2	0	0	0	0.028476	1	4900	4900		68.787	0	1	98996			3757	1636	2879	2889	4974	4974					-0.016280108331443444
DEEHPLVF	8	Unmodified	_DEEHPLVF_					0	0	0		MED1-CLPB|1|fusion;nc|ENSG00000162129|Q9H078-5|CLPB;nc|ENSG00000162129|Q9H078-3|CLPB;nc|ENSG00000162129|Q9H078-4|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB	MED1-CLPB|1|fusion	MED1-CLPB|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	493.2353210449219	2	493.234907	984.455261	1.991	0.00098204	0.51248	0.00025277	2.5035	0.0012348	493.23500506055234	98.73	0.53468	98.73	98.461	98.996	0					27	12	3	0	0	0	0.52992	1	10874	10874		74.517	5.7298	1	1817400			3758	6159	2880	2890	4975	4975					-0.037587982361287686
DEEKFQKNE	9	Unmodified	_DEEKFQKNE_					0	0	0			REV__ENST00000476395.1_1_20:57015848-57019288:+|nuORF	REV__ENST00000476395.1_1_20:57015848-57019288:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.8016357421875	2	583.769842	1165.52513	-1.0864	-0.00063419	-1.6413	-0.00095812	-2.7276	-0.0015923	583.7689319836956	49.644	0.30529	49.644	49.462	49.768	0					8	6	2	0	0	0	0.027433	1	3718	3718		54.776	0	1	59270	+		3759	26371	2881	2891	4976	4976					-0.05100964358166493
DEEMKKIVLK	10	Unmodified	_DEEMKKIVLK_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.2406311035156	3	411.568813	1231.68461	0.078176	3.2175E-05	3.9132	0.0016105	3.9913	0.0016427	411.5704244688202	27.966	0.24953	27.966	27.841	28.091	0					6	4	2	0	0	0	0.026871	1	874	874		27.047	4.4857	1	12021			3760	3103	2882	2892	4977	4977					0.07803452665439181
DEENTSAADHS	11	Unmodified	_DEENTSAADHS_					0	0	0		nc|ENSG00000071564|P15923-2|TCF3;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3	nc|ENSG00000071564|P15923-2|TCF3	nc|ENSG00000071564|P15923-2|TCF3	MULTI-MSMS	OvCa99_classI_Rep5	1	588.2249145507812	2	588.225996	1174.43744	1.3611	0.00080061	-4.1754	-0.0024561	-2.8143	-0.0016555	588.2233127749262	138.49	1.0118	138.49	138.16	139.17	0					48	20	4	0	0	0	0.50928	1	16174	16174		52.937	15.125	1	1075100			3761	1453	2883	2893	4978	4978					-0.14280210019592232
DEEPPRKRG	9	Unmodified	_DEEPPRKRG_					0	0	0		nc|ENSG00000186660|Q96JP5-2|ZFP91;ENSG00000186660|ENST00000316059|ZFP91	nc|ENSG00000186660|Q96JP5-2|ZFP91	nc|ENSG00000186660|Q96JP5-2|ZFP91	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.3765869140625	2	542.280712	1082.54687	-2.7858	-0.0015107	1.8419	0.00099885	-0.9439	-0.00051186	542.7820008596865	104.13	0.17053	104.13	104.02	104.19	0					5	3	2	0	0	0	0.027461	1	11665	11665		25.574	0.12388	1	85963			3762	8354	2884	2894	4979	4979					0.00889885181027239
DEEQGLHC	8	Unmodified	_DEEQGLHC_					0	0	0			REV__ENSG00000155629|ENST00000339364|PIK3AP1	REV__ENSG00000155629|ENST00000339364|PIK3AP1	MULTI-SECPEP	OvCa9_classI_Rep3	3	465.264404296875	2	465.684724	929.354895	-0.60002	-0.00027942	2.3109	0.0010762	1.7109	0.00079674	465.68520911629474	95.028	1.0003	93.132	92.813	93.813	-1.8956					36	19	3	0	0	0	0.028476	1	6191	6191		24.203	0	1	92944	+		3763	20432	2885	2895	4980	4980					-0.11260778561438656
DEERIVKY	8	Unmodified	_DEERIVKY_					0	0	0			REV__tr|A0A7D7A507|A0A7D7A507_9CLOTAcyl-CoAthioesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_04100PE=3SV=1	REV__tr|A0A7D7A507|A0A7D7A507_9CLOTAcyl-CoAthioesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_04100PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	527.27197265625	2	526.274564	1050.53457	0.029673	1.5616E-05	-1.7798	-0.00093666	-1.7501	-0.00092104	526.774418243587	96.355	1.0358	95.327	94.963	95.999	-1.0281					40	20	3	0	0	0	0.028476	1	8665	8665		29.15	0	1	70852	+		3764	32622	2886	2896	4981	4981					0.011328487180207958
DEESRLALV	9	Unmodified	_DEESRLALV_					0	0	0			REV__ENSG00000169174|ENST00000302118|PCSK9	REV__ENSG00000169174|ENST00000302118|PCSK9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.8229370117188	2	516.272021	1030.52949	-1.1912	-0.000615	-3.0183	-0.0015582	-4.2095	-0.0021732	516.7723070620924	120.58	0.36599	119.23	118.98	119.35	-1.3455					9	6	2	0	0	0	0.027455	1	11314	11314		51.335	11.277	1	10691	+		3765	21437	2887	2897	4982	4982					0.015445448553691676
DEETFFKEV	9	Unmodified	_DEETFFKEV_					0	0	0			REV__ENST00000515429.1_1_3:128598503-128612413:+|nuORF	REV__ENST00000515429.1_1_3:128598503-128612413:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	572.2633056640625	2	572.263862	1142.51317	-1.1489	-0.00065746	-2.3175	-0.0013262	-3.4664	-0.0019837	572.2623258533658	65.83	0.51038	65.83	65.625	66.136	0					31	12	4	0	0	0	0.14998	1	6062	6062		84.916	2.6105	1	3619600	+		3766	26998	2888	2898	4983	4983					-0.05238581101366435
DEEVHFWGSE	10	Unmodified	_DEEVHFWGSE_					0	0	0			REV__ENSG00000102241|ENST00000218364|HTATSF1	REV__ENSG00000102241|ENST00000218364|HTATSF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	616.8497924804688	2	617.754192	1233.49383	2.1351	0.001319	-1.1172	-0.00069016	1.0179	0.00062882	617.7539829188783	84.903	0.41565	84.903	84.631	85.046	0					13	9	2	0	0	0	0.026956	1	8903	8903		14.137	0	1	278830	+		3767	17546	2889	2899	4984	4984					-0.11357537392291306
DEFGIIRDV	9	Unmodified	_DEFGIIRDV_					0	0	0		ENSG00000160211|ENST00000393562|G6PD;nc|ENSG00000160211|P11413-3|G6PD	ENSG00000160211|ENST00000393562|G6PD	ENSG00000160211|ENST00000393562|G6PD	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.2770385742188	2	532.274564	1062.53457	-0.96519	-0.00051374	3.8455	0.0020469	2.8804	0.0015331	532.2764894278276	59.198	1.7363	55.806	55.2	56.936	-3.392					83	34	3	0	0	0	0.38529	1	3945	3945		53.351	2.016	1	508210			3768	6047	2890	2900	4985	4985					0.0058084871798200766
DEFPKYLR	8	Unmodified	_DEFPKYLR_					0	0	0		ENSG00000165970|ENST00000525748|SLC6A5;nc|ENSG00000165970|Q9Y345-3|SLC6A5;nc|ENSG00000165970|Q9Y345-2|SLC6A5	ENSG00000165970|ENST00000525748|SLC6A5	ENSG00000165970|ENST00000525748|SLC6A5	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.3125610351562	2	534.279649	1066.54475	1.2981	0.00069357	-2.825	-0.0015093	-1.5269	-0.00081578	534.277656363945	149.8	0.54434	149.8	149.6	150.14	0					20	10	3	0	0	0	0.028476	1	17524	17524		37.159	0	1	33413			3769	6622	2891	2901	4986	4986					0.014134564432197294
DEFRILPF	8	Unmodified	_DEFRILPF_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.3248901367188	2	518.776742	1035.53893	-0.70664	-0.00036659	-2.6127	-0.0013554	-3.3193	-0.001722	518.7750511944043	68.642	1.9348	66.022	65.081	67.016	-2.6203					70	38	3	0	0	0	0.028476	1	5531	5531		30.504	5.0535	1	124610	+		3770	16672	2892	2902	4987	4987					0.022583579315551106
DEFYHYFQV	9	Unmodified	_DEFYHYFQV_					0	0	0			REV__ENSG00000145632|ENST00000274289|PLK2	REV__ENSG00000145632|ENST00000274289|PLK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	623.2844848632812	2	624.272021	1246.52949	0.45669	0.0002851	0.66004	0.00041204	1.1167	0.00069714	624.2721340435944	141.01	1.1443	141.01	140.59	141.74	0					42	22	3	0	0	0	0.027462	1	16463	16463		23.042	0	1	155900	+		3771	19972	2893	2903	4988	4988					-0.0839145514462416
DEGAPYDT	8	Unmodified	_DEGAPYDT_					0	0	0			REV__nc|ENSG00000008294|O60271-5|SPAG9;REV__nc|ENSG00000008294|O60271-9|SPAG9	REV__nc|ENSG00000008294|O60271-9|SPAG9	MULTI-SECPEP	OvCa99_classI_Rep5	1	433.6005859375	2	434.171973	866.329392	0.4544	0.00019729	0.10344	4.491E-05	0.55784	0.0002422	434.1719500952199	69.249	0.77914	69.249	69.019	69.798	0					23	18	2	0	0	0	0.028476	1	6636	6636		31.955	18.996	1	544430	+		3772	16450;28704	2894	2904	4989	4989					-0.10911929812232302
DEGLLIVKI	9	Unmodified	_DEGLLIVKI_					0	0	0		ENSG00000197279|ENST00000683778|ZNF165	ENSG00000197279|ENST00000683778|ZNF165	ENSG00000197279|ENST00000683778|ZNF165	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.76727294921875	2	500.307875	998.601197	-0.53442	-0.00026738	0.52814	0.00026423	-0.0062799	-3.1419E-06	500.30804996001575	105.21	1.1541	103.19	102.85	104	-2.0161					37	22	2	0	0	0	0.027462	1	9502	9502		27.882	0	1	101370			3773	8696	2895	2905	4990	4990					0.10184084279910621
DEGLQKWSD	9	Unmodified	_DEGLQKWSD_					0	0	0			REV__sp|Q6SW00|US06_HCMVMUniqueshortUS6glycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=US6PE=2SV=1	REV__sp|Q6SW00|US06_HCMVMUniqueshortUS6glycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=US6PE=2SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.3170776367188	2	539.246003	1076.47745	-1.9813	-0.0010684	2.9157	0.0015723	0.93444	0.00050389	539.2482065432686	72.997	0.38707	69.601	69.446	69.833	-3.3961					10	7	2	0	0	0	0.027455	1	5627	5627		34.173	2.6427	1	18760	+		3774	29421	2896	2906	4991	4991					-0.057726185583760525
DEGLVAAPIV	10	Unmodified	_DEGLVAAPIV_					0	0	0		ENSG00000171467|ENST00000361428|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.8319091796875	2	492.274032	982.533512	2.4062	0.0011845	1.6883	0.00083112	4.0945	0.0020156	492.27482407272714	75.563	0.50953	75.563	75.292	75.801	0					31	12	3	0	0	0	0.026582	1	7531	7531		38.806	8.3025	1	848660			3775	7198	2897	2907	4992	4992					0.04154634349083608
DEGNSTRLQD	10	Unmodified	_DEGNSTRLQD_					0	0	0		ENST00000568703.5_1_16:28935989-28936046:-|nuORF	ENST00000568703.5_1_16:28935989-28936046:-|nuORF	ENST00000568703.5_1_16:28935989-28936046:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.3284912109375	2	567.754724	1133.49489	-2.43	-0.0013797	4.4108	0.0025042	1.9807	0.0011246	567.7570531118715	141.26	0.54153	140.24	140.09	140.63	-1.0187					14	10	2	0	0	0	0.026975	1	11709	11709		38.754	18.757	1	18427			3776	13872	2898	2908	4993	4993					-0.06651323023379518
DEGNSTRLQD	10	Unmodified	_DEGNSTRLQD_					0	0	0		ENST00000568703.5_1_16:28935989-28936046:-|nuORF	ENST00000568703.5_1_16:28935989-28936046:-|nuORF	ENST00000568703.5_1_16:28935989-28936046:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	567.754724	1133.49489	-1.4968	-0.0008498	3.6932	0.0020968	2.1964	0.001247	567.7566737818113	140.76	0.39204	140.53	140.33	140.73	-0.22697	0.20691	0.0011696	NaN	38.754	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13499			3777	13872	2898	2908							-0.06651323023379518
DEGTLEPYSDC	11	Unmodified	_DEGTLEPYSDC_					0	0	0			REV__nc|ENSG00000127863|Q9NS68-3|TNFRSF19	REV__nc|ENSG00000127863|Q9NS68-3|TNFRSF19	MULTI-MSMS	OvCa9_classI_Rep2	2	614.7388305664062	2	614.737351	1227.46015	-2.0204	-0.001242	4.183	0.0025715	2.1627	0.0013295	614.7404537850678	118.46	2.2258	118.31	117.89	120.11	-0.14755					114	44	5	0	0	0	0.67529	1	11379	11379		37.812	0.65241	1	750750	+		3778	18829	2899	2909	4994	4994					-0.1444832694633078
DEGTLEPYSDC	11	Unmodified	_DEGTLEPYSDC_					0	0	0			REV__nc|ENSG00000127863|Q9NS68-3|TNFRSF19	REV__nc|ENSG00000127863|Q9NS68-3|TNFRSF19	MULTI-MSMS	OvCa9_classI_Rep4_	4	614.7399291992188	2	614.737351	1227.46015	-1.3373	-0.0008221	3.0482	0.0018739	1.7109	0.0010518	614.739888567499	119.3	1.8196	117.96	117.63	119.45	-1.3444					101	34	5	0	0	0	0.69455	1	11274	11274		31.53	3.6476	1	912670	+		3779	18829	2899	2909	4995	4995					-0.1444832694633078
DEGVGLGIQV	10	Unmodified	_DEGVGLGIQV_					0	0	0			REV__ENSG00000172572|ENST00000359062|PDE3A;REV__PDE3A|p.A263Gfs*32|1|0.15|ENSG00000172572|chr12:20370071-20370072|-/GGGTGCGCCTGCCTCTGGCTGT|frameshift_variant	REV__ENSG00000172572|ENST00000359062|PDE3A	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.6969909667969	2	493.761289	985.508025	0.14325	7.073E-05	-0.596	-0.00029428	-0.45275	-0.00022355	493.7608284844769	45.316	0.33982	45.316	45.114	45.454	0					10	7	2	0	0	0	0.026782	1	3131	3131		37.812	19.487	1	90596	+		3780	21711;29284	2900	2910	4996	4996					0.014691598266722394
DEGWLVLDV	9	Unmodified	_DEGWLVLDV_					0	0	0		nc|ENSG00000116985|P34820-2|BMP8B;ENSG00000183682|ENST00000331593|BMP8A;ENSG00000116985|ENST00000372827|BMP8B	nc|ENSG00000116985|P34820-2|BMP8B	nc|ENSG00000116985|P34820-2|BMP8B	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.3379516601562	2	523.263665	1044.51278	0.22724	0.00011891	0.44572	0.00023323	0.67296	0.00035214	523.2637039068917	141.36	0.30153	141.36	141.23	141.54	0					7	5	2	0	0	0	0.027418	1	16533	16533		49.442	0	1	9112			3781	3225	2901	2911	4997	4997					-0.007699560306036801
DEGYKETLT	9	Unmodified	_DEGYKETLT_					0	0	0			REV__ENST00000510104.5_1_5:140071123-140075505:+|nuORF	REV__ENST00000510104.5_1_5:140071123-140075505:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.7706909179688	2	528.248212	1054.48187	-0.72834	-0.00038475	1.4075	0.0007435	0.67913	0.00035875	528.2484646048833	64.088	0.87762	60.613	60.393	61.271	-3.475					36	17	3	0	0	0	0.027462	1	4612	4612		31.53	0	1	132680	+		3782	18123	2902	2912	4998	4998					-0.04319154135487224
DEGYNDWKI	9	Unmodified	_DEGYNDWKI_					0	0	0			REV__tr|A0A7D6W2I1|A0A7D6W2I1_9CLOTcysteine-S-conjugatebeta-lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06170PE=3SV=1	REV__tr|A0A7D6W2I1|A0A7D6W2I1_9CLOTcysteine-S-conjugatebeta-lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06170PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	570.2547607421875	2	570.253828	1138.4931	2.3944	0.0013654	0.025292	1.4423E-05	2.4197	0.0013798	570.2537447916601	80.319	0.84187	80.319	79.944	80.786	0					33	19	2	0	0	0	0.38969	1	8246	8246		52.937	0	1	809230	+		3783	31900	2903	2913	4999	4999					-0.07060332041328365
DEGYNDWKI	9	Unmodified	_DEGYNDWKI_					0	0	0			REV__tr|A0A7D6W2I1|A0A7D6W2I1_9CLOTcysteine-S-conjugatebeta-lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06170PE=3SV=1	REV__tr|A0A7D6W2I1|A0A7D6W2I1_9CLOTcysteine-S-conjugatebeta-lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06170PE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	570.253828	1138.4931	2.3944	0.0013654	0.025292	1.4423E-05	2.4197	0.0013798	570.2537447916601	80.319	0.84187	80.319	79.944	80.786	0	0	0	NaN	52.937	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	809230	+		3784	31900	2903	2913							-0.07060332041328365
DEHAGVISV	9	Unmodified	_DEHAGVISV_					0	0	0		ENST00000531779.1_1_1:110946539-110950281:-|nuORF;ENSG00000134248|ENST00000602318|LAMTOR5	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	ENST00000531779.1_1_1:110946539-110950281:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.73321533203125	2	463.732532	925.45051	-0.97709	-0.00045311	0.83204	0.00038584	-0.14505	-6.7267E-05	463.7327652123931	80.053	1.0755	77.301	77.034	78.109	-2.7514					51	21	3	0	0	0	0.24951	1	6526	6526		68.787	7.8149	1	283610			3785	4268	2904	2914	5000	5000					-0.015196823788869551
DEHIVFQGPL	10	Unmodified	_DEHIVFQGPL_					0	0	0		ENST00000585488.1_1_12:133768044-133768326:+|nuORF	ENST00000585488.1_1_12:133768044-133768326:+|nuORF	ENST00000585488.1_1_12:133768044-133768326:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	577.7966918945312	2	577.795663	1153.57677	2.4857	0.0014362	-0.11708	-6.7647E-05	2.3686	0.0013686	577.7958129946741	98.988	0.89244	98.988	98.596	99.488	0					59	21	5	0	0	0	0.55359	1	10952	10952		47.657	7.5992	1	5084200			3786	14034	2905	2915	5001	5001					0.006128241264150347
DEIDADQHS	9	Unmodified	_DEIDADQHS_					0	0	0			REV__ENSG00000044574|ENST00000324460|HSPA5	REV__ENSG00000044574|ENST00000324460|HSPA5	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.7816162109375	2	515.209618	1028.40468	2.2953	0.0011825	-3.6	-0.0018547	-1.3047	-0.00067221	515.2075210235214	112.02	0.64047	110.92	110.75	111.39	-1.1038					16	12	2	0	0	0	0.027462	1	8197	8197		44.117	0	1	18427	+		3787	16650	2906	2916	5002	5002					-0.10838372351804537
DEIDWHSNC	9	Unmodified	_DEIDWHSNC_					0	0	0			REV__ENSG00000177575|ENST00000432237|CD163	REV__ENSG00000177575|ENST00000432237|CD163	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.82666015625	2	559.714013	1117.41347	0.28335	0.00015859	3.6873	0.0020638	3.9706	0.0022224	559.7160137970734	117.64	0.63058	116.3	116.1	116.73	-1.3444					16	11	2	0	0	0	0.027462	1	11028	11028		19.104	3.4617	1	29411	+		3788	22015	2907	2917	5003	5003					-0.1405372198698842
DEIEKIKAY	9	Unmodified	_DEIEKIKAY_					0	0	0		ENSG00000169288|ENST00000315567|MRPL1	ENSG00000169288|ENST00000315567|MRPL1	ENSG00000169288|ENST00000315567|MRPL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.2958374023438	2	554.797872	1107.58119	-0.26465	-0.00014682	-0.5003	-0.00027756	-0.76494	-0.00042439	554.7973645472144	117.39	2.7699	116.03	115.72	118.49	-1.3645					68	32	3	0	0	0	0.56889	1	11009	11009		35.618	0.41757	1	179280			3789	6998	2908	2918	5004	5004					0.0317028854929049
DEIFRSWDI	9	Unmodified	_DEIFRSWDI_					0	0	0			REV__tr|A0A7D7A3C5|A0A7D7A3C5_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23160PE=3SV=1	REV__tr|A0A7D7A3C5|A0A7D7A3C5_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23160PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.8261108398438	2	590.785296	1179.55604	0.34396	0.00020321	0.053717	3.1735E-05	0.39768	0.00023494	590.7856745483246	73.819	0.45876	73.819	73.636	74.095	0					16	11	2	0	0	0	0.027462	1	7261	7261		13.454	0	1	642940	+		3790	32578	2909	2919	5005	5005					-0.02655766253269576
DEIGVKSQKN	10	Unmodified	_DEIGVKSQKN_					0	0	0			REV__ENSG00000205359|ENST00000506729|SLCO6A1	REV__ENSG00000205359|ENST00000506729|SLCO6A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.275634765625	2	559.296027	1116.5775	-0.069229	-3.872E-05	-0.43737	-0.00024462	-0.5066	-0.00028334	559.2957314420024	38.136	0.63491	38.136	37.896	38.531	0					39	13	4	0	0	0	0.027088	1	2167	2167		26.693	0	1	1781600	+		3791	23213	2910	2920	5006	5006					0.023876187754240163
DEIIPTNTL	9	Unmodified	_DEIIPTNTL_					0	0	0		ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	MULTI-MSMS	OvCa99_classI_Rep5	1	508.2698669433594	2	508.268947	1014.52334	1.3436	0.0006829	0.43052	0.00021882	1.7741	0.00090172	508.26930918016984	132.99	0.79234	132.99	132.6	133.4	0					32	16	3	0	0	0	0.11471	1	15462	15462		93.195	8.2799	1	243140			3792	1894	2911	2921	5007	5007					0.01666026623865946
DEIIQYIQI	9	Unmodified	_DEIIQYIQI_					0	0	0		nc|ENSG00000082269|Q9P2D6-3|FAM135A;nc|ENSG00000082269|Q9P2D6-2|FAM135A;nc|ENSG00000082269|Q9P2D6-4|FAM135A;ENSG00000082269|ENST00000418814|FAM135A	nc|ENSG00000082269|Q9P2D6-3|FAM135A	nc|ENSG00000082269|Q9P2D6-3|FAM135A	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.2901611328125	2	567.805697	1133.59684	2.0743	0.0011778	-1.6949	-0.00096238	0.37935	0.0002154	567.8041162109444	128.65	0.55975	128.65	128.32	128.88	0					21	11	3	0	0	0	0.027343	1	14890	14890		68.787	22.815	1	68631			3793	1675	2912	2922	5008	5008					0.035385750663408544
DEILHLVPN	9	Unmodified	_DEILHLVPN_					0	0	0		ENSG00000115421|ENST00000238714|PAPOLG;PAPOLG|p.T602Hfs*16|1|0.05|ENSG00000115421|chr2:60793999-60794000|-/C|frameshift_variant;PAPOLA|p.F273Lfs*6|1|0.06|ENSG00000090060|chr14:96532631-96532632|-/A|frameshift_variant;nc|ENSG00000090060|P51003-2|PAPOLA;ENSG00000218823|ENST00000404991|PAPOLB;ENSG00000090060|ENST00000216277|PAPOLA;nc|ENSG00000115421|Q9BWT3-2|PAPOLG	ENSG00000115421|ENST00000238714|PAPOLG;nc|ENSG00000115421|Q9BWT3-2|PAPOLG	ENSG00000115421|ENST00000238714|PAPOLG	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.29833984375	2	525.284931	1048.55531	0.63981	0.00033608	0.75203	0.00039503	1.3918	0.00073111	525.2849468500985	113.31	0.54697	112.23	111.91	112.45	-1.0753					14	10	2	0	0	0	0.027462	1	8300	8300		38.806	25.352	1	23474			3794	3096;14975	2913	2923	5009	5009					0.03297439097673305
DEILMDLNL	9	Unmodified	_DEILMDLNL_					0	0	0		tr|A0A7D6VY48|A0A7D6VY48_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11355PE=4SV=1	tr|A0A7D6VY48|A0A7D6VY48_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11355PE=4SV=1	tr|A0A7D6VY48|A0A7D6VY48_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11355PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	537.8047485351562	2	538.270632	1074.52671	0.78019	0.00041995	-4.2727	-0.0022999	-3.4925	-0.0018799	538.2680779925018	73.885	1.0396	71.398	71.125	72.164	-2.4873					34	20	2	0	0	0	0.027441	1	3656	3656		68.787	12.066	1	92493			3795	35316	2914	2924	5010	5010					-0.007570465937988047
DEILQQHKLK	10	Unmodified	_DEILQQHKLK_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;NCOR2|p.V700Afs*10|1|0.12|ENSG00000196498|chr12:124378305-124378306|-/TACAAAGTCAAAAGTAGTG|frameshift_variant	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	OvCa9_classI_Rep2	2	417.90679931640625	3	417.906705	1250.69829	-0.79569	-0.00033252	0.52974	0.00022138	-0.26595	-0.00011114	417.90691486872447	51.141	1.5374	48.347	47.975	49.512	-2.794					76	30	6	0	0	0	0.33877	1	3360	3360		76.17	22.573	1	1288200			3796	8615	2915	2925	5011	5011					0.08296446488884612
DEILTIDNSIT	11	Unmodified	_DEILTIDNSIT_					0	0	0		tr|A0A7D7A6Q0|A0A7D7A6Q0_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11080PE=4SV=1	tr|A0A7D7A6Q0|A0A7D7A6Q0_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11080PE=4SV=1	tr|A0A7D7A6Q0|A0A7D7A6Q0_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11080PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	616.8497924804688	2	617.314083	1232.61361	1.8782	0.0011594	-4.4111	-0.002723	-2.533	-0.0015636	617.3114254381156	85.264	0.49883	85.264	84.963	85.462	0					23	11	3	0	0	0	0.025912	1	8903	8903		7.3997	0	1	1021900			3797	36201	2916	2926	5012	5012					0.006610311616213949
DEINFLRAL	9	Unmodified	_DEINFLRAL_					0	0	0		ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538	ENSG00000185479|ENST00000252252|KRT6B	ENSG00000185479|ENST00000252252|KRT6B	MULTI-MSMS	OvCa9_classI_Rep2	2	545.7982788085938	2	545.798206	1089.58186	0.10875	5.9355E-05	-0.28146	-0.00015362	-0.17271	-9.4267E-05	545.7979475948976	133.37	1.3778	133.14	132.82	134.2	-0.22696					81	27	4	0	0	0	0.043101	11	13179	13170;13179;13185;13192;13198;13204;13210;13216;13230;13236;13247		124.08	27.25	1	613460		+	3798	620	2917	2927	5013;5014;5015;5016;5017;5018;5019;5020;5021;5022;5023	5014					0.04065127988997119
DEINFLRAL	9	Unmodified	_DEINFLRAL_					0	0	0		ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538	ENSG00000185479|ENST00000252252|KRT6B	ENSG00000185479|ENST00000252252|KRT6B	MULTI-MSMS	OvCa9_classI_Rep3	3	545.7982788085938	2	545.798206	1089.58186	-0.84793	-0.0004628	0.69331	0.00037841	-0.15463	-8.4394E-05	545.7984441888154	134.15	1.3829	133.03	132.76	134.15	-1.1226					73	27	4	0	0	0	0.010478	10	10804	10788;10792;10798;10804;10809;10816;10828;10835;10841;10866		167.23	32.418	1	422680		+	3799	620	2917	2927	5024;5025;5026;5027;5028;5029;5030;5031;5032;5033	5027					0.04065127988997119
DEINFLRAL	9	Unmodified	_DEINFLRAL_					0	0	0		ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538	ENSG00000185479|ENST00000252252|KRT6B	ENSG00000185479|ENST00000252252|KRT6B	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.798583984375	2	545.798206	1089.58186	2.709	0.0014786	-3.0388	-0.0016586	-0.3298	-0.00018	545.7964917392193	134.45	1.7813	132.93	132.59	134.37	-1.5257					89	34	4	0	0	0	0.0073055	7	13002	12979;12990;13002;13014;13026;13038;13065		190.52	73.614	1	647340		+	3800	620	2917	2927	5034;5035;5036;5037;5038;5039;5040	5036					0.04065127988997119
DEINFLRQL	9	Unmodified	_DEINFLRQL_					0	0	0		CON__H-INV:HIT000292931;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000450021.1_1_2:183936291-183936849:-|nuORF;ENST00000551916.1_1_12:62273577-62274426:+|nuORF;ENST00000473150.1_1_3:87372750-87373125:+|nuORF;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552	CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8	ENSG00000170421|ENST00000692008|KRT8	MULTI-MSMS	OvCa9_classI_Rep2	2	574.3084106445312	2	574.308938	1146.60332	-0.00029748	-1.7085E-07	-0.5703	-0.00032753	-0.5706	-0.0003277	574.3086467243419	126.7	2.569	126.47	126.15	128.71	-0.2359					160	51	5	0	0	0	0.00017416	20	12381	12360;12364;12369;12375;12381;12387;12393;12399;12405;12411;12417;12423;12429;12436;12443;12448;12454;12461;12469;12499		247.94	111.67	1	3189700		+	3801	622;610	2918	2928	5041;5042;5043;5044;5045;5046;5047;5048;5049;5050;5051;5052;5053;5054;5055;5056;5057;5058;5059;5060	5045					0.03588513017712103
DEINFLRQL	9	Unmodified	_DEINFLRQL_					0	0	0		CON__H-INV:HIT000292931;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000450021.1_1_2:183936291-183936849:-|nuORF;ENST00000551916.1_1_12:62273577-62274426:+|nuORF;ENST00000473150.1_1_3:87372750-87373125:+|nuORF;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552	CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8	ENSG00000170421|ENST00000692008|KRT8	MULTI-MSMS	OvCa9_classI_Rep3	3	574.3087158203125	2	574.308938	1146.60332	0.46769	0.0002686	-0.65212	-0.00037452	-0.18443	-0.00010592	574.3085582069592	127.47	2.6543	126.4	126.07	128.73	-1.0715					153	52	5	0	0	0	0.0047186	19	10013	9978;9983;9989;9995;10001;10007;10013;10019;10025;10031;10037;10043;10050;10056;10062;10068;10074;10080;10087		227.71	107.09	1	1924100		+	3802	622;610	2918	2928	5061;5062;5063;5064;5065;5066;5067;5068;5069;5070;5071;5072;5073;5074;5075;5076;5077;5078;5079	5067					0.03588513017712103
DEINFLRQL	9	Unmodified	_DEINFLRQL_					0	0	0		CON__H-INV:HIT000292931;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000450021.1_1_2:183936291-183936849:-|nuORF;ENST00000551916.1_1_12:62273577-62274426:+|nuORF;ENST00000473150.1_1_3:87372750-87373125:+|nuORF;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552	CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8	ENSG00000170421|ENST00000692008|KRT8	MULTI-MSMS	OvCa9_classI_Rep4_	4	574.3080444335938	2	574.308938	1146.60332	-0.89182	-0.00051218	0.17374	9.9778E-05	-0.71808	-0.0004124	574.3090246281425	127.75	2.9616	126.31	125.99	128.95	-1.4357					168	58	5	0	0	0	0.00017416	13	12196	12175;12184;12196;12208;12220;12232;12244;12256;12268;12281;12294;12306;12320		247.94	102.98	1	3385000		+	3803	622;610	2918	2928	5080;5081;5082;5083;5084;5085;5086;5087;5088;5089;5090;5091;5092	5082					0.03588513017712103
DEINFLRTL	9	Unmodified	_DEINFLRTL_					0	0	0		ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENST00000548088.1_1_12:52632481-52635423:+|nuORF;DTX4-KRT7|1|fusion	ENSG00000135480|ENST00000331817|KRT7;DTX4-KRT7|1|fusion	ENSG00000135480|ENST00000331817|KRT7	MULTI-MSMS	OvCa9_classI_Rep2	2	560.8037719726562	2	560.803488	1119.59242	1.6039	0.00089945	-2.0042	-0.0011239	-0.40031	-0.00022449	560.8023528609191	128.62	2.5229	128.4	128.08	130.6	-0.22697					138	50	5	0	0	0	2.4958E-07	25	12603	12585;12591;12597;12603;12609;12615;12621;12627;12633;12639;12645;12651;12657;12664;12670;12677;12683;12690;12696;12702;12708;12713;12720;12725;12739		264.95	139.14	1	2179300		+	3804	646;764	2919	2929	5093;5094;5095;5096;5097;5098;5099;5100;5101;5102;5103;5104;5105;5106;5107;5108;5109;5110;5111;5112;5113;5114;5115;5116;5117	5096					0.03741110643454704
DEINFLRTL	9	Unmodified	_DEINFLRTL_					0	0	0		ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENST00000548088.1_1_12:52632481-52635423:+|nuORF;DTX4-KRT7|1|fusion	ENSG00000135480|ENST00000331817|KRT7;DTX4-KRT7|1|fusion	ENSG00000135480|ENST00000331817|KRT7	MULTI-MSMS	OvCa9_classI_Rep3	3	560.8026733398438	2	560.803488	1119.59242	0.25307	0.00014192	-0.44839	-0.00025146	-0.19532	-0.00010954	560.8032345362215	129.48	1.9294	128.36	128.04	129.97	-1.1121					118	38	5	0	0	0	0.00012761	19	10222	10212;10217;10222;10228;10234;10240;10246;10252;10258;10264;10270;10276;10282;10288;10294;10300;10306;10338;10352		248.96	119.28	1	1829600		+	3805	646;764	2919	2929	5118;5119;5120;5121;5122;5123;5124;5125;5126;5127;5128;5129;5130;5131;5132;5133;5134;5135;5136	5120					0.03741110643454704
DEINFLRTL	9	Unmodified	_DEINFLRTL_					0	0	0		ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENST00000548088.1_1_12:52632481-52635423:+|nuORF;DTX4-KRT7|1|fusion	ENSG00000135480|ENST00000331817|KRT7;DTX4-KRT7|1|fusion	ENSG00000135480|ENST00000331817|KRT7	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.8025512695312	2	560.803488	1119.59242	3.0616	0.001717	-3.6261	-0.0020335	-0.56448	-0.00031656	560.8014582088352	129.77	2.693	128.31	127.94	130.63	-1.4565					149	54	4	0	0	0	2.4958E-07	13	12424	12412;12424;12436;12448;12460;12472;12484;12496;12508;12520;12532;12556;12569		264.95	128.69	1	2469500		+	3806	646;764	2919	2929	5137;5138;5139;5140;5141;5142;5143;5144;5145;5146;5147;5148;5149	5138					0.03741110643454704
DEINQQSQL	9	Unmodified	_DEINQQSQL_					0	0	0		nc|ENSG00000168280|O60282-2|KIF5C;ENSG00000168280|ENST00000435030|KIF5C;ENSG00000155980|ENST00000455537|KIF5A	nc|ENSG00000168280|O60282-2|KIF5C	nc|ENSG00000168280|O60282-2|KIF5C	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.8327026367188	2	537.756735	1073.49892	-1.0914	-0.00058692	3.7461	0.0020145	2.6547	0.0014276	537.7586920338699	94.503	1.3492	92.035	91.762	93.111	-2.4685					48	26	3	0	0	0	0.027137	1	8268	8268		98.629	24.374	1	134840			3807	6886	2920	2930	5150	5150					-0.03489233529671765
DEINQQSQL	9	Unmodified	_DEINQQSQL_					0	0	0		nc|ENSG00000168280|O60282-2|KIF5C;ENSG00000168280|ENST00000435030|KIF5C;ENSG00000155980|ENST00000455537|KIF5A	nc|ENSG00000168280|O60282-2|KIF5C	nc|ENSG00000168280|O60282-2|KIF5C	MULTI-MATCH	OvCa9_classI_Rep3	3		2	537.756735	1073.49892	0.15693	8.4392E-05	3.2847	0.0017664	3.4417	0.0018508	537.7583335688079	93.889	1.2708	91.928	91.627	92.898	-1.9617	-0.089148	-0.00069198	NaN	98.629	36	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135040			3808	6886	2920	2930							-0.03489233529671765
DEINSVLNVL	10	Unmodified	_DEINSVLNVL_					0	0	0		tr|A0A553SHP0|A0A553SHP0_NIACIRegulatoryproteinYycHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13340PE=4SV=1	tr|A0A553SHP0|A0A553SHP0_NIACIRegulatoryproteinYycHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13340PE=4SV=1	tr|A0A553SHP0|A0A553SHP0_NIACIRegulatoryproteinYycHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13340PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	558.298583984375	2	558.300778	1114.587	0.64738	0.00036143	-2.8536	-0.0015932	-2.2062	-0.0012317	558.29900042177	109.51	1.3356	109.34	109.12	110.45	-0.17237					56	26	3	0	0	0	0.60504	1	10315	10315		41.427	0	1	142080			3809	33292	2921	2931	5151	5151					0.03429387060964473
DEIPVAVKV	9	Unmodified	_DEIPVAVKV_					0	0	0			REV__ENSG00000134516|ENST00000520908|DOCK2	REV__ENSG00000134516|ENST00000520908|DOCK2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.3119812011719	2	485.2844	968.554247	-0.8047	-0.00039051	1.2741	0.00061831	0.46942	0.0002278	485.28487626887807	109.04	0.97618	107.32	107.07	108.05	-1.7256					24	18	2	0	0	0	0.027462	1	10032	10032		30.504	3.7075	1	33958	+		3810	19210	2922	2932	5152	5152					0.06871224728763536
DEIPVAVKV	9	Unmodified	_DEIPVAVKV_					0	0	0			REV__ENSG00000134516|ENST00000520908|DOCK2	REV__ENSG00000134516|ENST00000520908|DOCK2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	485.2844	968.554247	0.098698	4.7897E-05	0.53117	0.00025777	0.62986	0.00030566	485.28447441962186	107.35	1.0286	107.04	106.37	107.4	-0.30836	-0.14546	-0.00039536	NaN	27.882	28	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33570	+		3811	19210	2922	2932							0.06871224728763536
DEIPVAVKV	9	Unmodified	_DEIPVAVKV_					0	0	0			REV__ENSG00000134516|ENST00000520908|DOCK2	REV__ENSG00000134516|ENST00000520908|DOCK2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	485.2844	968.554247	-0.37013	-0.00017962	4.0499	0.0019654	3.6798	0.0017857	485.28463700178025	108.41	1.1296	107.21	106.59	107.72	-1.1978	0.018877	0.0030198	NaN	27.882	41	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34599	+		3812	19210	2922	2932							0.06871224728763536
DEIRFKMD	8	Unmodified	_DEIRFKMD_					0	0	0			REV__INPP5K|p.N194K|1|0.14|ENSG00000132376|chr17:1508199-1508199|G/C|missense_variant	REV__INPP5K|p.N194K|1|0.14|ENSG00000132376|chr17:1508199-1508199|G/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.2682495117188	2	527.255317	1052.49608	2.1141	0.0011147	0.57297	0.0003021	2.6871	0.0014168	527.2555415828184	120.81	0.27037	120.81	120.7	120.97	0					8	5	2	0	0	0	0.028476	1	13894	13894		60.972	0	1	145940	+		3813	28307	2923	2933	5153	5153					-0.02806780188166158
DEIRRLRKE	9	Unmodified	_DEIRRLRKE_					0	0	0		nc|ENSG00000182504|Q8IW35-2|CEP97;ENSG00000182504|ENST00000341893|CEP97	nc|ENSG00000182504|Q8IW35-2|CEP97	nc|ENSG00000182504|Q8IW35-2|CEP97	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.8944091796875	3	405.570316	1213.68912	1.6594	0.000673	3.0049	0.0012187	4.6643	0.0018917	405.90602708733286	45.947	0.35926	45.947	45.71	46.069	0					12	7	3	0	0	0	0.027462	1	3210	3210		12.812	0	1	84113			3814	8003	2924	2934	5154	5154					0.09082097923260335
DEISGNIFLD	10	Unmodified	_DEISGNIFLD_					0	0	0			REV__tr|A0A7D7AFE3|A0A7D7AFE3_9CLOTSingle-stranded-DNA-specificexonucleaseRecJOS=ClostridiumintestinaleOX=36845GN=recJPE=3SV=1	REV__tr|A0A7D7AFE3|A0A7D7AFE3_9CLOTSingle-stranded-DNA-specificexonucleaseRecJOS=ClostridiumintestinaleOX=36845GN=recJPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	560.8294067382812	2	561.769311	1121.52407	0.22337	0.00012548	-0.62463	-0.0003509	-0.40125	-0.00022541	561.7686829610212	118.28	0.63116	116.93	116.68	117.31	-1.3444					17	11	2	0	0	0	0.02676	1	11110	11110		41.427	12.257	1	23570	+		3815	32713	2925	2935	5155	5155					-0.03183178727090308
DEISGNIFLD	10	Unmodified	_DEISGNIFLD_					0	0	0			REV__tr|A0A7D7AFE3|A0A7D7AFE3_9CLOTSingle-stranded-DNA-specificexonucleaseRecJOS=ClostridiumintestinaleOX=36845GN=recJPE=3SV=1	REV__tr|A0A7D7AFE3|A0A7D7AFE3_9CLOTSingle-stranded-DNA-specificexonucleaseRecJOS=ClostridiumintestinaleOX=36845GN=recJPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	561.769311	1121.52407	-0.79309	-0.00044554	1.0641	0.00059779	0.27103	0.00015225	561.769618622464	117.98	0.54401	116.95	116.69	117.23	-1.0324	0.0070769	0.00081442	NaN	49.536	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22316	+		3816	32713	2925	2935							-0.03183178727090308
DEITKIKL	8	Unmodified	_DEITKIKL_					0	0	0		tr|A0A553SSK4|A0A553SSK4_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03080PE=4SV=1	tr|A0A553SSK4|A0A553SSK4_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03080PE=4SV=1	tr|A0A553SSK4|A0A553SSK4_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03080PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	480.2920227050781	2	480.292225	958.569897	0.0078083	3.7502E-06	-0.024863	-1.1942E-05	-0.017055	-8.1914E-06	480.2920690065583	111	1.1828	110.86	110.58	111.77	-0.13961					60	23	4	0	0	0	0.42649	3	10468	10463;10468;10480		84.916	5.4645	1	401970			3817	34385	2926	2936	5156;5157;5158	5157					0.08895511245793841
DEITKIKL	8	Unmodified	_DEITKIKL_					0	0	0		tr|A0A553SSK4|A0A553SSK4_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03080PE=4SV=1	tr|A0A553SSK4|A0A553SSK4_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03080PE=4SV=1	tr|A0A553SSK4|A0A553SSK4_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03080PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	480.29150390625	2	480.292225	958.569897	1.9432	0.00093331	-2.2557	-0.0010834	-0.31248	-0.00015008	480.29095784813535	111.84	1.4316	110.74	110.2	111.63	-1.1038					69	28	4	0	0	0	0.40148	2	8154	8137;8154		87.754	5.4493	1	400640			3818	34385	2926	2936	5159;5160	5160					0.08895511245793841
DEITKIKL	8	Unmodified	_DEITKIKL_					0	0	0		tr|A0A553SSK4|A0A553SSK4_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03080PE=4SV=1	tr|A0A553SSK4|A0A553SSK4_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03080PE=4SV=1	tr|A0A553SSK4|A0A553SSK4_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03080PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.29193115234375	2	480.292225	958.569897	0.23066	0.00011078	-0.80249	-0.00038543	-0.57182	-0.00027464	480.291681008161	112.38	1.1095	110.87	110.58	111.69	-1.5111					56	21	3	0	0	0	0.53252	2	10382	10373;10382		74.255	5.7703	1	484450			3819	34385	2926	2936	5161;5162	5162					0.08895511245793841
DEITRGPEQ	9	Unmodified	_DEITRGPEQ_					0	0	0			REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	MULTI-MSMS	OvCa9_classI_Rep2	2	522.7518310546875	2	522.751453	1043.48835	3.3759	0.0017648	-2.7303	-0.0014273	0.64564	0.00033751	522.7498693889222	26.205	1.4035	23.495	23.207	24.61	-2.7097					77	38	3	0	0	0	0.53483	1	358	358		39.253	2.0937	1	431350	+		3820	19252	2927	2937	5163	5163					-0.03165216184106612
DEIVALKKV	9	Unmodified	_DEIVALKKV_					0	0	0		nc|ENSG00000185324|Q15131-6|CDK10;nc|ENSG00000185324|Q15131-5|CDK10;ENST00000504473.5_1_16:89753600-89759778:+|nuORF;ENST00000505733.5_1_16:89753118-89759778:+|nuORF;ENSG00000185324|ENST00000353379|CDK10	nc|ENSG00000185324|Q15131-6|CDK10	nc|ENSG00000185324|Q15131-6|CDK10	MULTI-MSMS	OvCa9_classI_Rep2	2	507.81256103515625	2	507.813325	1013.6121	-0.12107	-6.1481E-05	-0.4963	-0.00025203	-0.61737	-0.00031351	507.81301768077884	108.09	2.3576	107.86	106.9	109.26	-0.22498					116	47	4	0	0	0	0.31747	1	10108	10108		60.972	0.85368	1	960970			3821	8248	2928	2938	5164	5164					0.1058348665419544
DEIVALKKV	9	Unmodified	_DEIVALKKV_					0	0	0		nc|ENSG00000185324|Q15131-6|CDK10;nc|ENSG00000185324|Q15131-5|CDK10;ENST00000504473.5_1_16:89753600-89759778:+|nuORF;ENST00000505733.5_1_16:89753118-89759778:+|nuORF;ENSG00000185324|ENST00000353379|CDK10	nc|ENSG00000185324|Q15131-6|CDK10	nc|ENSG00000185324|Q15131-6|CDK10	MULTI-MSMS	OvCa9_classI_Rep3	3	507.8122863769531	2	507.813325	1013.6121	-0.47218	-0.00023978	-0.17891	-9.0854E-05	-0.65109	-0.00033063	507.8132436809137	108.94	1.7138	107.74	107.32	109.03	-1.1978					102	32	5	0	0	0	0.24951	2	7817	7817;7823		68.787	7.4862	1	1384800			3822	8248	2928	2938	5165;5166	5165					0.1058348665419544
DEIVFLFHP	9	Unmodified	_DEIVFLFHP_					0	0	0		tr|A0A553SME6|A0A553SME6_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_22325PE=4SV=1	tr|A0A553SME6|A0A553SME6_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_22325PE=4SV=1	tr|A0A553SME6|A0A553SME6_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_22325PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	558.7904052734375	2	558.78985	1115.56515	1.0194	0.00056962	-0.90589	-0.0005062	0.11349	6.342E-05	558.7890736933357	126.17	1.36	125.1	124.76	126.12	-1.0715					58	25	4	0	0	0	0.32337	1	9859	9859		60.294	6.9425	1	130080			3823	33824	2929	2939	5167	5167					0.011986271030764328
DEIVFLFHP	9	Unmodified	_DEIVFLFHP_					0	0	0		tr|A0A553SME6|A0A553SME6_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_22325PE=4SV=1	tr|A0A553SME6|A0A553SME6_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_22325PE=4SV=1	tr|A0A553SME6|A0A553SME6_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_22325PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.7903442382812	2	558.78985	1115.56515	-1.3026	-0.00072791	1.1336	0.00063343	-0.16908	-9.4481E-05	558.7902918355239	126.44	1.2335	125.02	124.78	126.01	-1.4143					61	24	4	0	0	0	0.52083	1	12067	12067		40.573	4.1259	1	117080			3824	33824	2929	2939	5168	5168					0.011986271030764328
DEIVGLKIN	9	Unmodified	_DEIVGLKIN_					0	0	0			REV__ENST00000551983.1_1_12:104335630-104337190:+|nuORF	REV__ENST00000551983.1_1_12:104335630-104337190:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.2965393066406	2	500.787307	999.560061	-2.1195	-0.0010614	-4.1729	-0.0020897	-6.2923	-0.0031511	500.7882001511865	88.574	0.65664	85.972	85.679	86.336	-2.6027					22	12	3	0	0	0	0.027418	1	7549	7549		68.787	22.02	1	41178	+		3825	21210	2930	2940	5169	5169					0.06026323240428155
DEIYKYDKK	9	Unmodified	_DEIYKYDKK_					0	0	0		ENSG00000121022|ENST00000357849|COPS5;ENST00000521509.5_1_8:67974087-67974366:-|nuORF	ENSG00000121022|ENST00000357849|COPS5	ENSG00000121022|ENST00000357849|COPS5	MULTI-MSMS	OvCa9_classI_Rep2	2	601.3088989257812	2	601.308603	1200.60265	-1.6404	-0.00098638	1.4494	0.00087154	-0.19098	-0.00011484	601.3093900477178	120.38	1.1842	120.21	119.89	121.08	-0.17138					49	23	4	0	0	0	0.28934	1	11617	11617		64.207	10.856	1	181640			3826	3465	2931	2941	5170	5170					0.010376735779800583
DEIYKYDKK	9	Unmodified	_DEIYKYDKK_					0	0	0		ENSG00000121022|ENST00000357849|COPS5;ENST00000521509.5_1_8:67974087-67974366:-|nuORF	ENSG00000121022|ENST00000357849|COPS5	ENSG00000121022|ENST00000357849|COPS5	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	601.308603	1200.60265	0.28791	0.00017312	-0.47841	-0.00028767	-0.19049	-0.00011455	601.308263783612	121.55	1.3274	120.2	119.9	121.23	-1.3479	0.014609	-0.0003276	NaN	64.207	46	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187200			3827	3465	2931	2941							0.010376735779800583
DEKEIYTKA	9	Unmodified	_DEKEIYTKA_					0	0	0			REV__CPD-NSRP1|1|fusion	REV__CPD-NSRP1|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7606201171875	2	548.779679	1095.5448	0.78773	0.00043229	-3.8792	-0.0021288	-3.0915	-0.0016965	549.2796468908264	153.83	0.19217	153.83	153.69	153.88	0					5	3	2	0	0	0	0.027462	1	18025	18025		36.447	8.3653	1	16768	+		3828	16231	2932	2942	5171	5171					0.0008541165257156536
DEKEPLSL	8	Unmodified	_DEKEPLSL_					0	0	0			REV__nc|ENSG00000060339|Q8IX12-2|CCAR1	REV__nc|ENSG00000060339|Q8IX12-2|CCAR1	MULTI-SECPEP	OvCa9_classI_Rep3	3	466.2724304199219	2	465.742565	929.470577	-1.084	-0.00050486	0.233	0.00010852	-0.851	-0.00039635	465.7431368126227	86.986	0.30135	84.809	84.633	84.934	-2.1768					7	5	2	0	0	0	0.028476	1	5210	5210		53.351	0	1	10442	+		3829	16738	2933	2943	5172	5172					0.0030206856106360647
DEKEVLKSL	9	Unmodified	_DEKEVLKSL_					0	0	0		nc|ENSG00000144191|Q16281-2|CNGA3;ENSG00000144191|ENST00000272602|CNGA3;nc|ENSG00000144191|Q16281-3|CNGA3	nc|ENSG00000144191|Q16281-2|CNGA3	nc|ENSG00000144191|Q16281-2|CNGA3	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.29052734375	2	530.797872	1059.58119	-0.21151	-0.00011227	-0.98265	-0.00052159	-1.1942	-0.00063386	530.7977396549566	58.754	0.40439	58.754	58.488	58.892	0					13	9	2	0	0	0	0.027432	1	5028	5028		58.23	1.7961	1	697180			3830	5133	2934	2944	5173	5173					0.05378288549286481
DEKFYRNL	8	Unmodified	_DEKFYRNL_					0	0	0		ENST00000228741.7_1_12:96662085-96662190:+|nuORF	ENST00000228741.7_1_12:96662085-96662190:+|nuORF	ENST00000228741.7_1_12:96662085-96662190:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	542.7802124023438	2	542.774731	1083.53491	1.5871	0.00086145	3.8551	0.0020924	5.4422	0.0029539	542.7766722586902	110.02	0.98852	110.02	109.68	110.67	0					48	21	4	0	0	0	0.56195	1	12490	12490		71.296	2.5089	1	3287100			3831	9714	2935	2945	5174	5174					-0.0035173156215932977
DEKGIITIL	9	Unmodified	_DEKGIITIL_					0	0	0			REV__nc|ENSG00000115677|Q00341-2|HDLBP	REV__nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-MSMS	OvCa9_classI_Rep2	2	501.2972717285156	2	501.297507	1000.58046	-1.7009	-0.00085264	1.4294	0.00071655	-0.27147	-0.00013609	501.29808755011607	120.33	1.4803	120.16	119.84	121.32	-0.17137					84	29	5	0	0	0	0.13504	2	11601	11596;11601		87.696	10.873	1	488720	+		3832	28810	2936	2946	5175;5176	5176					0.08019493900224006
DEKGKFKLCK	10	Unmodified	_DEKGKFKLCK_					0	0	0			REV__L3MBTL4|p.I468F|1|0.38|ENSG00000154655|chr18:6080923-6080923|T/A|missense_variant	REV__L3MBTL4|p.I468F|1|0.38|ENSG00000154655|chr18:6080923-6080923|T/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.3034057617188	2	598.328816	1194.64308	1.5039	0.00089983	-0.041419	-2.4782E-05	1.4625	0.00087504	598.8288060971614	138.67	0.28561	138.67	138.45	138.74	0					10	5	3	0	0	0	0.026994	1	16167	16167		25.574	0	1	117740	+		3833	28610	2937	2947	5177	5177					0.053543166967756406
DEKIGDVFM	9	Oxidation (M)	_DEKIGDVFM(Oxidation (M))_		DEKIGDVFM(1)		DEKIGDVFM(51)	0	0	1			REV__ENST00000391992.3_1_12:9180728-9181528:-|nuORF	REV__ENST00000391992.3_1_12:9180728-9181528:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.2478637695312	2	535.247157	1068.47976	-0.67645	-0.00036207	2.2139	0.001185	1.5374	0.00082291	535.24815657859	112.28	1.2183	110.76	110.42	111.64	-1.5111					45	23	3	0	0	0	0.40667	1	10368	10368		51.335	8.9393	1	190180	+		3834	25244	2938	2948	5178	5178		571			-0.05173906144932516
DEKIGDVFM	9	Oxidation (M)	_DEKIGDVFM(Oxidation (M))_					0	0	1			REV__ENST00000391992.3_1_12:9180728-9181528:-|nuORF	REV__ENST00000391992.3_1_12:9180728-9181528:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	535.247157	1068.47976	-0.68642	-0.0003674	-1.1351	-0.00060754	-1.8215	-0.00097494	535.2482296738215	110.88	1.2834	110.74	110.29	111.57	-0.13961	0.031218	-0.002377	NaN	51.335	69	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69209	+		3835	25244	2938	2948				571			-0.05173906144932516
DEKIGDVFM	9	Oxidation (M)	_DEKIGDVFM(Oxidation (M))_					0	0	1			REV__ENST00000391992.3_1_12:9180728-9181528:-|nuORF	REV__ENST00000391992.3_1_12:9180728-9181528:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	535.247157	1068.47976	2.4309	0.0013011	-0.95694	-0.0005122	1.4739	0.00078891	535.2466223714232	111.73	1.135	110.62	110.35	111.48	-1.1038	-0.086603	-0.0021863	NaN	51.335	35	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119470	+		3836	25244	2938	2948				571			-0.05173906144932516
DEKIGDVFM	9	Oxidation (M)	_DEKIGDVFM(Oxidation (M))_					0	0	1			REV__ENST00000391992.3_1_12:9180728-9181528:-|nuORF	REV__ENST00000391992.3_1_12:9180728-9181528:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	535.247157	1068.47976	-0.67645	-0.00036207	2.2139	0.001185	1.5374	0.00082291	535.24815657859	112.28	1.2183	110.76	110.42	111.64	-1.5111	0.055385	0.001208	NaN	51.335	45	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190180	+		3837	25244	2938	2948				571			-0.05173906144932516
DEKINEKEI	9	Unmodified	_DEKINEKEI_					0	0	0			REV__tr|A0A7D6VQE4|A0A7D6VQE4_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_20465PE=4SV=1	REV__tr|A0A7D6VQE4|A0A7D6VQE4_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_20465PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	558.3081665039062	2	559.290411	1116.56627	0.1135	6.348E-05	-1.7997	-0.0010066	-1.6862	-0.0009431	559.2893672812958	86.493	1.0289	85.003	84.245	85.274	-1.4906					34	19	2	0	0	0	0.027462	1	7511	7511		47.657	12.039	1	21944	+		3838	31319	2939	2949	5179	5179					0.012647966812892264
DEKKIYDLI	9	Unmodified	_DEKKIYDLI_					0	0	0		tr|A0A553SGE1|A0A553SGE1_NIACIDNAtopoisomeraseOS=NialliacirculansOX=1397GN=CEQ21_10660PE=3SV=1	tr|A0A553SGE1|A0A553SGE1_NIACIDNAtopoisomeraseOS=NialliacirculansOX=1397GN=CEQ21_10660PE=3SV=1	tr|A0A553SGE1|A0A553SGE1_NIACIDNAtopoisomeraseOS=NialliacirculansOX=1397GN=CEQ21_10660PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	569.318359375	2	568.813522	1135.61249	1.6973	0.00096545	0.36228	0.00020607	2.0596	0.0011715	569.3143712532918	125.17	0.60088	125.17	124.79	125.39	0					21	14	2	0	0	0	0.28934	1	14463	14463		64.207	3.2353	1	262470			3839	33148	2940	2950	5180	5180					0.05010861583377846
DEKLPRAVTL	10	Unmodified	_DEKLPRAVTL_					0	0	0		ENSG00000188883|ENST00000340940|KLRG2;KLRG2-C4orf34|1|fusion;nc|ENSG00000188883|A4D1S0-2|KLRG2	ENSG00000188883|ENST00000340940|KLRG2	ENSG00000188883|ENST00000340940|KLRG2	MULTI-MSMS	OvCa9_classI_Rep4_	4	571.3317260742188	2	571.332413	1140.65027	-0.80515	-0.00046001	0.77941	0.0004453	-0.025739	-1.4706E-05	571.3325786177619	117.75	1.3144	116.4	116.1	117.42	-1.3444					78	24	6	0	0	0	0.45822	1	11025	11025		60.118	4.6141	1	282390			3840	8512	2941	2951	5181	5181					0.08557372568861865
DEKNPAQLH	9	Unmodified	_DEKNPAQLH_					0	0	0			REV__C1GALT1C1|p.I150Sfs*5|2|0.06|ENSG00000171155|chrX:120626720-120626720|A/-|frameshift_variant	REV__C1GALT1C1|p.I150Sfs*5|2|0.06|ENSG00000171155|chrX:120626720-120626720|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.7423095703125	2	526.261988	1050.50942	-0.48003	-0.00025262	0.63159	0.00033238	0.15155	7.9757E-05	526.2622779018303	118.82	0.64418	117.79	117.49	118.13	-1.0271					19	12	2	0	0	0	0.027462	1	8959	8959		21.96	7.2958	1	22317	+		3841	15718	2942	2952	5182	5182					-0.013812060845793894
DEKSKQALR	9	Unmodified	_DEKSKQALR_					0	0	0		tr|A0A553SNR4|A0A553SNR4_NIACIM48familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_24885PE=4SV=1	tr|A0A553SNR4|A0A553SNR4_NIACIM48familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_24885PE=4SV=1	tr|A0A553SNR4|A0A553SNR4_NIACIM48familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_24885PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.8291015625	2	537.798737	1073.58292	2.5427	0.0013675	-2.1336	-0.0011475	0.40909	0.00022001	537.7965709109592	124.56	0.15583	123.51	123.43	123.58	-1.0519					4	2	2	0	0	0	0.027462	1	9662	9662		30.504	0	1	3152.5			3842	33949	2943	2953	5183	5183					0.04907342357887501
DEKVAELVQ	9	Unmodified	_DEKVAELVQ_					0	0	0		nc|ENSG00000165509|Q8TD91-2|MAGEC3;ENSG00000165509|ENST00000298296|MAGEC3	nc|ENSG00000165509|Q8TD91-2|MAGEC3	nc|ENSG00000165509|Q8TD91-2|MAGEC3	MULTI-MSMS	OvCa9_classI_Rep2	2	515.7745971679688	2	515.774396	1029.53424	0.25666	0.00013238	-0.44158	-0.00022776	-0.18492	-9.5376E-05	515.7741357954794	109.36	1.83	109.19	108.52	110.35	-0.17237					68	36	2	0	0	0	0.22621	1	10290	10290		71.877	0	1	218150			3843	6572	2944	2954	5184	5184					0.02065428998139396
DELAIKPFG	9	Unmodified	_DELAIKPFG_					0	0	0			REV__ENST00000327490.7_1_17:74266610-74266811:+|nuORF	REV__ENST00000327490.7_1_17:74266610-74266811:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.8144226074219	2	495.26875	988.522947	-0.53471	-0.00026482	-3.6147	-0.0017903	-4.1494	-0.0020551	495.26676984350246	70.446	0.51085	70.446	70.13	70.641	0					20	12	3	0	0	0	0.027433	1	6745	6745		60.972	21.719	1	678200	+		3844	24499	2945	2955	5185	5185					0.02822651694657452
DELDEAHNQ	9	Unmodified	_DELDEAHNQ_					0	0	0		ENSG00000135736|ENST00000258214|CCDC102A	ENSG00000135736|ENST00000258214|CCDC102A	ENSG00000135736|ENST00000258214|CCDC102A	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.7885131835938	2	535.722892	1069.43123	-0.46238	-0.00024771	0.72435	0.00038805	0.26197	0.00014034	535.723289310266	42.585	0.29702	42.585	42.412	42.709	0					9	6	2	0	0	0	0.027462	1	2744	2744		40.778	2.9666	1	42999			3845	4409	2946	2956	5186	5186					-0.10070683460480723
DELDGKELD	9	Unmodified	_DELDGKELD_					0	0	0			REV__SPTA1|p.V2114Gfs*21|1|0.16|ENSG00000163554|chr1:158620246-158620247|-/ATCTTCTAAGTCTCCTTTTTCTAGGTCATTTACCC|frameshift_variant	REV__SPTA1|p.V2114Gfs*21|1|0.16|ENSG00000163554|chr1:158620246-158620247|-/ATCTTCTAAGTCTCCTTTTTCTAGGTCATTTACCC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	517.2391357421875	2	517.237844	1032.46113	-1.3477	-0.00069706	2.7045	0.0013988	1.3568	0.00070179	517.2390638488089	34.375	0.89405	34.375	34.017	34.911	0					43	18	4	0	0	0	0.19758	1	1657	1657		76.774	2.5191	1	757750	+		3846	29449	2947	2957	5187	5187					-0.05379744515130369
DELEGIREEA	10	Unmodified	_DELEGIREEA_					0	0	0			REV__L1M1_dup621|chr1:224985612-224987088:+|1.1406864670825911|0.0275683224481481|5.37|427.0|38|3|sense	REV__L1M1_dup621|chr1:224985612-224987088:+|1.1406864670825911|0.0275683224481481|5.37|427.0|38|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.3110961914062	2	580.775125	1159.5357	1.2527	0.00072757	-4.2779	-0.0024845	-3.0251	-0.0017569	580.7725583244104	112.39	0.59142	112.39	112.06	112.66	0					24	12	3	0	0	0	0.026714	1	12754	12754		42.864	0	1	240670	+		3847	28350	2948	2958	5188	5188					-0.03768981703751706
DELFAPHGPS	10	Unmodified	_DELFAPHGPS_					0	0	0			REV__nc|ENSG00000121104|Q9C073-2|FAM117A	REV__nc|ENSG00000121104|Q9C073-2|FAM117A	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.2758178710938	2	535.251089	1068.48762	1.6915	0.0009054	1.2964	0.0006939	2.9879	0.0015993	535.2514709221161	129.77	0.65559	129.77	129.5	130.15	0					18	13	2	0	0	0	0.026493	1	15045	15045		54.776	21.964	1	49936	+		3848	18531	2949	2959	5189	5189					-0.043880108331450174
DELFLKRL	8	Unmodified	_DELFLKRL_					0	0	0		SMYD4|p.D64*|1|0.04|ENSG00000186532|chr17:1812060-1812061|-/A|frameshift_variant;ENST00000573937.5_1_17:1707859-1733034:-|nuORF;ENSG00000186532|ENST00000305513|SMYD4	SMYD4|p.D64*|1|0.04|ENSG00000186532|chr17:1812060-1812061|-/A|frameshift_variant	SMYD4|p.D64*|1|0.04|ENSG00000186532|chr17:1812060-1812061|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	517.3035888671875	2	517.305667	1032.59678	2.058	0.0010646	-1.7496	-0.00090509	0.30838	0.00015953	517.3046010027335	125.01	0.9949	123.96	123.58	124.58	-1.0519					44	18	3	0	0	0	0.70469	1	9722	9722		42.396	1.618	1	149470			3849	8346	2950	2960	5190	5190					0.08178619856994374
DELFSEDAI	9	Unmodified	_DELFSEDAI_					0	0	0			REV__nc|ENSG00000183914|Q9P225-2|DNAH2	REV__nc|ENSG00000183914|Q9P225-2|DNAH2	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.621337890625	2	519.734937	1037.45532	0.90318	0.00046941	-1.2953	-0.00067321	-0.39212	-0.0002038	519.7341331500729	91.156	0.8124	91.156	90.899	91.711	0					49	19	3	0	0	0	0.027462	1	9785	9785		44.117	6.9577	1	4494700	+		3850	22394	2951	2961	5191	5191					-0.061908430267976655
DELGFDIV	8	Unmodified	_DELGFDIV_					0	0	0		tr|A0A553SR53|A0A553SR53_NIACIPutativeN-acetylmannosamine-6-phosphate2-epimeraseOS=NialliacirculansOX=1397GN=nanEPE=3SV=1	tr|A0A553SR53|A0A553SR53_NIACIPutativeN-acetylmannosamine-6-phosphate2-epimeraseOS=NialliacirculansOX=1397GN=nanEPE=3SV=1	tr|A0A553SR53|A0A553SR53_NIACIPutativeN-acetylmannosamine-6-phosphate2-epimeraseOS=NialliacirculansOX=1397GN=nanEPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	454.7834777832031	2	454.224008	906.433463	-0.82605	-0.00037521	-2.6932	-0.0012233	-3.5192	-0.0015985	454.22273984469984	69.912	0.41784	69.912	69.672	70.089	0					20	9	3	0	0	0	0.028476	1	6682	6682		57.811	24.296	1	338500			3851	34230	2952	2962	5192	5192					-0.02349602984725152
DELGRVVI	8	Unmodified	_DELGRVVI_					0	0	0		tr|A0A553SHI5|A0A553SHI5_NIACIAbrB/MazE/SpoVTfamilyDNA-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12970PE=4SV=1	tr|A0A553SHI5|A0A553SHI5_NIACIAbrB/MazE/SpoVTfamilyDNA-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12970PE=4SV=1	tr|A0A553SHI5|A0A553SHI5_NIACIAbrB/MazE/SpoVTfamilyDNA-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12970PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.75146484375	2	450.761092	899.507631	2.2151	0.00099849	-0.4312	-0.00019437	1.7839	0.00080412	450.76100262678824	77.99	0.20988	77.99	77.924	78.134	0					6	4	2	0	0	0	0.028476	1	7904	7904		29.15	0	1	97988			3852	33277	2953	2963	5193	5193					0.053857848974644185
DELHVPGGSF	10	Unmodified	_DELHVPGGSF_					0	0	0			REV__nc|ENSG00000112769|Q16363-2|LAMA4	REV__nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.333984375	2	529.251089	1056.48762	-1.218	-0.00064464	1.0851	0.00057427	-0.13296	-7.0369E-05	529.2513950145155	123.91	0.39347	122.52	122.27	122.67	-1.3908					12	7	2	0	0	0	0.026802	1	11708	11708		51.335	17.163	1	19222	+		3853	18117	2954	2964	5194	5194					-0.038360108331289666
DELIAKLVK	9	Unmodified	_DELIAKLVK_					0	0	0		nc|ENSG00000178809|Q86UV6-2|TRIM74;ENSG00000178809|ENST00000323819|TRIM73;ENSG00000155428|ENST00000285805|TRIM74	nc|ENSG00000178809|Q86UV6-2|TRIM74	nc|ENSG00000178809|Q86UV6-2|TRIM74	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7762451171875	2	514.82115	1027.62775	-0.095873	-4.9357E-05	-0.36927	-0.00019011	-0.46514	-0.00023947	514.8208361952371	109.59	0.5276	107.86	107.68	108.21	-1.7256					14	9	3	0	0	0	0.027448	1	10073	10073		35.618	1.4457	1	19579			3854	5784	2955	2965	5195	5195					0.11503773171239118
DELIAKLVK	9	Unmodified	_DELIAKLVK_					0	0	0		nc|ENSG00000178809|Q86UV6-2|TRIM74;ENSG00000178809|ENST00000323819|TRIM73;ENSG00000155428|ENST00000285805|TRIM74	nc|ENSG00000178809|Q86UV6-2|TRIM74	nc|ENSG00000178809|Q86UV6-2|TRIM74	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.82115	1027.62775	0.24079	0.00012396	-0.84405	-0.00043453	-0.60325	-0.00031057	514.8204146312452	108.16	0.49563	107.93	107.73	108.22	-0.22498	0.036969	-0.00016572	NaN	35.618	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13560			3855	5784	2955	2965							0.11503773171239118
DELIHLCKL	9	Unmodified	_DELIHLCKL_					0	0	0			REV__ENST00000310078.12_1_2:228421145-228421229:+|nuORF	REV__ENST00000310078.12_1_2:228421145-228421229:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.3776245117188	2	542.296985	1082.57942	-2.6375	-0.0014303	1.2091	0.0006557	-1.4284	-0.00077463	542.29918750482	104.22	0.51294	104.22	103.89	104.41	0					14	11	2	0	0	0	0.027448	1	11689	11689		53.351	27.777	1	237680	+		3856	24335	2956	2966	5196	5196					0.041429562596931646
DELIIDFY	8	Unmodified	_DELIIDFY_					0	0	0			REV__tr|A0A7D6VN74|A0A7D6VN74_9CLOTStageVsporulationproteinADOS=ClostridiumintestinaleOX=36845GN=spoVADPE=4SV=1	REV__tr|A0A7D6VN74|A0A7D6VN74_9CLOTStageVsporulationproteinADOS=ClostridiumintestinaleOX=36845GN=spoVADPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.311767578125	2	514.252766	1026.49098	-0.30523	-0.00015696	-3.3161	-0.0017053	-3.6213	-0.0018623	514.250959941253	105.7	0.55042	103.68	103.4	103.95	-2.0161					18	10	2	0	0	0	0.028476	1	9628	9628		33.516	13.519	1	14501	+		3857	31161	2957	2967	5197	5197					-0.021207607791211558
DELIPVSPV	9	Unmodified	_DELIPVSPV_					0	0	0			REV__ENST00000344651.4_1_12:121158482-121158590:+|nuORF	REV__ENST00000344651.4_1_12:121158482-121158590:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.2841796875	2	484.768583	967.522613	2.3894	0.0011583	4.314	0.0020913	6.7035	0.0032496	484.7707150393627	76.061	0.87949	76.061	75.639	76.518	0					28	21	2	0	0	0	0.027433	1	7544	7544		34.173	13.226	1	521150	+		3858	24682	2958	2968	5198	5198					0.03755231974821527
DELKDLKL	8	Unmodified	_DELKDLKL_					0	0	0			REV__tr|A0A7D6W3U7|A0A7D6W3U7_9CLOTBglGfamilytranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11245PE=4SV=1	REV__tr|A0A7D6W3U7|A0A7D6W3U7_9CLOTBglGfamilytranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11245PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.2984313964844	2	487.281857	972.549162	1.7502	0.00085284	-0.36556	-0.00017813	1.3846	0.00067471	487.2817506187983	87.236	0.40929	87.236	87.096	87.505	0					14	9	2	0	0	0	0.028476	1	9226	9226		44.117	8.4985	1	547400	+		3859	31924	2959	2969	5199	5199					0.061789208661252815
DELKDLKL	8	Unmodified	_DELKDLKL_					0	0	0			REV__tr|A0A7D6W3U7|A0A7D6W3U7_9CLOTBglGfamilytranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11245PE=4SV=1	REV__tr|A0A7D6W3U7|A0A7D6W3U7_9CLOTBglGfamilytranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11245PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	487.281857	972.549162	1.9319	0.00094139	-1.1646	-0.00056748	0.76734	0.00037391	487.28099178305575	88.968	0.19777	87.601	87.527	87.725	-1.3676	0.15285	2.0813E-06	NaN	44.117	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34550	+		3860	31924	2959	2969							0.061789208661252815
DELLEKKF	8	Unmodified	_DELLEKKF_					0	0	0			REV__tr|A0A7D6VXN8|A0A7D6VXN8_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12720PE=4SV=1	REV__tr|A0A7D6VXN8|A0A7D6VXN8_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12720PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	512.2791748046875	2	511.281857	1020.54916	0.48369	0.0002473	-0.35126	-0.00017959	0.13243	6.771E-05	511.2815267517586	112.19	1.0843	112.07	111.59	112.67	-0.12174					26	21	2	0	0	0	0.028476	1	10589	10589		50.025	4.0726	1	34581	+		3861	31782	2960	2970	5200	5200					0.03970920866140659
DELLFIPF	8	Unmodified	_DELLFIPF_					0	0	0			REV__nc|ENSG00000162736|Q92542-2|NCSTN	REV__nc|ENSG00000162736|Q92542-2|NCSTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.7533874511719	2	497.268219	992.521884	-0.5274	-0.00026226	-0.076059	-3.7822E-05	-0.60346	-0.00030008	497.2678498147491	55.441	1.5168	55.441	55.064	56.581	0					52	36	2	0	0	0	0.028476	1	4687	4687		13.775	0	1	230190	+		3862	20773	2961	2971	5201	5201					0.02532437325760384
DELLKETW	8	Unmodified	_DELLKETW_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.762939453125	2	517.263665	1032.51278	0.09436	4.8809E-05	-3.9282	-0.0020319	-3.8339	-0.0019831	517.2615231495055	162.31	0.80986	162.31	161.72	162.53	0					22	15	2	0	0	0	0.59148	1	19018	19018		65.803	5.6849	1	185740	+		3863	28906	2962	2972	5202	5202					-0.00217956030564892
DELLQRIGR	9	Unmodified	_DELLQRIGR_					0	0	0		tr|A0A553SKL4|A0A553SKL4_NIACIHemechaperoneHemWOS=NialliacirculansOX=1397GN=CEQ21_18930PE=3SV=1	tr|A0A553SKL4|A0A553SKL4_NIACIHemechaperoneHemWOS=NialliacirculansOX=1397GN=CEQ21_18930PE=3SV=1	tr|A0A553SKL4|A0A553SKL4_NIACIHemechaperoneHemWOS=NialliacirculansOX=1397GN=CEQ21_18930PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7877807617188	2	550.314554	1098.61456	0.57966	0.00031899	1.5309	0.00084249	2.1106	0.0011615	550.3149203972507	140.26	0.3275	140.26	140.17	140.49	0					8	6	2	0	0	0	0.027462	1	16377	16377		53.351	14.099	1	28505			3864	33629	2963	2973	5203	5203					0.06919335111865621
DELLRKMDL	9	Unmodified	_DELLRKMDL_					0	0	0			REV__ENSG00000118017|ENST00000236709|A4GNT	REV__ENSG00000118017|ENST00000236709|A4GNT	MULTI-SECPEP	OvCa9_classI_Rep2	2	566.298828125	2	566.805174	1131.59579	-1.2815	-0.00072634	1.5506	0.00087891	0.26918	0.00015257	566.8059158582379	101.79	3.5623	101.02	99.476	103.04	-0.764					194	71	5	0	0	0	0.027426	1	9174	9174		56.721	0	1	313830	+		3865	18376	2964	2974	5204	5204					0.03526037425785944
DELMAGHIE	9	Unmodified	_DELMAGHIE_					0	0	0			REV__nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1	REV__nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.31768798828125	2	507.731674	1013.4488	-0.75091	-0.00038126	0.0049375	2.5069E-06	-0.74597	-0.00037875	507.7319731347269	55.937	0.25264	52.643	52.567	52.819	-3.2944					6	4	2	0	0	0	0.027462	1	3545	3545		24.203	0	1	8525.4	+		3866	17182	2965	2975	5205	5205					-0.05739059459165219
DELMHTDYL	9	Unmodified	_DELMHTDYL_					0	0	0		sp|Q6SW73|ICP27_HCMVMmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL69PE=3SV=1;sp|P16749|ICP27_HCMVAmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL69PE=1SV=1	sp|Q6SW73|ICP27_HCMVMmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL69PE=3SV=1	sp|Q6SW73|ICP27_HCMVMmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL69PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.326416015625	2	568.750064	1135.48558	1.8337	0.0010429	3.8238	0.0021748	5.6574	0.0032177	568.7520291524849	112.57	0.62959	112.57	112.3	112.92	0					26	13	3	0	0	0	0.027462	1	12839	12839		53.351	15.54	1	293150			3867	32894	2966	2976	5206	5206					-0.07674807633270575
DELPIDLLN	9	Unmodified	_DELPIDLLN_					0	0	0			REV__ENST00000471919.1_1_6:116981518-116989864:-|nuORF	REV__ENST00000471919.1_1_6:116981518-116989864:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.30712890625	2	521.276772	1040.53899	-0.38883	-0.00020269	-4.1657	-0.0021715	-4.5545	-0.0023742	521.7760694267943	90.676	0.51239	88.101	87.853	88.365	-2.575					20	9	3	0	0	0	0.027462	1	7824	7824		37.812	7.4938	1	16480	+		3868	20355	2967	2977	5207	5207					0.02034313140939048
DELQAYAQL	9	Unmodified	_DELQAYAQL_					0	0	0		nc|ENSG00000277149|Q6NUM6-2|TYW1B;ENSG00000277149|ENST00000620995|TYW1B;ENSG00000198874|ENST00000359626|TYW1	nc|ENSG00000277149|Q6NUM6-2|TYW1B	nc|ENSG00000277149|Q6NUM6-2|TYW1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.2880249023438	2	525.758746	1049.50294	1.7714	0.00093135	1.0888	0.00057247	2.8603	0.0015038	525.7591332820462	110.78	0.48671	110.78	110.54	111.02	0					17	10	2	0	0	0	0.027343	1	12589	12589		90.777	21.149	1	172920			3869	8895	2968	2978	5208	5208					-0.019831440359666885
DELQINPTI	9	Unmodified	_DELQINPTI_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-7|BLTP1;REV__nc|ENSG00000138688|Q2LD37-6|BLTP1	REV__nc|ENSG00000138688|Q2LD37-6|BLTP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.3201904296875	2	521.774396	1041.53424	-0.41868	-0.00021846	0.25891	0.00013509	-0.15978	-8.3368E-05	521.7742968685521	105.46	0.26311	105.46	105.22	105.49	0					8	5	2	0	0	0	0.027433	1	11820	11820		37.812	0	1	143520	+		3870	19560;28886	2969	2979	5209	5209					0.015134289981688198
DELQYSND	8	Unmodified	_DELQYSND_					0	0	0			REV__tr|A0A7D7ABV9|A0A7D7ABV9_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16770PE=4SV=1	REV__tr|A0A7D7ABV9|A0A7D7ABV9_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16770PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.7650451660156	2	492.201261	982.38797	2.0131	0.00099085	1.1061	0.0005444	3.1192	0.0015353	492.2016486059204	91.561	1.5079	91.561	91.213	92.721	0					77	35	3	0	0	0	0.028476	1	9992	9992		35.618	0	1	1383100	+		3871	32680	2970	2980	5210	5210					-0.10392873237753975
DELSLLQKL	9	Unmodified	_DELSLLQKL_					0	0	0		nc|ENSG00000155846|Q86YN6-4|PPARGC1B;nc|ENSG00000155846|Q86YN6-2|PPARGC1B;nc|ENSG00000155846|Q86YN6-3|PPARGC1B;ENSG00000155846|ENST00000309241|PPARGC1B	nc|ENSG00000155846|Q86YN6-4|PPARGC1B	nc|ENSG00000155846|Q86YN6-4|PPARGC1B	MULTI-MSMS	OvCa99_classI_Rep5	1	529.8115844726562	2	529.808239	1057.60193	2.3129	0.0012254	1.9188	0.0010166	4.2316	0.002242	529.8093586318323	113.41	1.7235	113.41	112.79	114.51	0					63	39	3	0	0	0	0.1804	1	12936	12936		79.713	8.3347	1	916480			3872	5804	2971	2981	5211	5211					0.07542878928961727
DELSNSKKN	9	Unmodified	_DELSNSKKN_					0	0	0			REV__tr|A0A7D6VXX0|A0A7D6VXX0_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13605PE=3SV=1	REV__tr|A0A7D6VXX0|A0A7D6VXX0_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13605PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.2401123046875	2	517.759278	1033.504	1.8022	0.00093311	4.4318	0.0022946	6.234	0.0032277	517.7614436258243	95.267	0.75078	95.267	94.949	95.699	0					37	17	3	0	0	0	0.027426	1	10456	10456		56.721	0	1	1856900	+		3873	31794	2972	2982	5212	5212					-0.011409296670308322
DELTRWHI	8	Unmodified	_DELTRWHI_					0	0	0			REV__ENSG00000117862|ENST00000371626|TXNDC12	REV__ENSG00000117862|ENST00000371626|TXNDC12	MULTI-MSMS	OvCa99_classI_Rep5	1	535.2747802734375	2	535.274898	1068.53524	1.7497	0.00093657	-0.77161	-0.00041302	0.97808	0.00052354	535.2743740035442	129.56	2.3123	129.56	128.84	131.15	0					122	48	5	0	0	0	0.60331	1	15000	15000		63.306	8.53	1	4983700	+		3874	18371	2973	2983	5213	5213					0.0037168815770201036
DELVEVEL	8	Unmodified	_DELVEVEL_					0	0	0			REV__nc|ENSG00000185164|Q5JPE7-3|NOMO2	REV__nc|ENSG00000185164|Q5JPE7-3|NOMO2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.7740173339844	2	473.242398	944.470243	-0.070992	-3.3596E-05	4.3471	0.0020572	4.2761	0.0020236	473.24436284222963	69.956	0.88011	66.474	66.201	67.081	-3.4812					40	17	3	0	0	0	0.028476	1	5324	5324		40.573	0	1	62885	+		3875	17605	2974	2984	5214	5214					-0.004213511587977337
DELVIGRDKL	10	Unmodified	_DELVIGRDKL_					0	0	0			REV__tr|A0A7D7A3E9|A0A7D7A3E9_9CLOTCysteine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=cysSPE=3SV=1	REV__tr|A0A7D7A3E9|A0A7D7A3E9_9CLOTCysteine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=cysSPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	579.3336181640625	2	579.32987	1156.64519	1.6824	0.00097467	3.8783	0.0022468	5.5607	0.0032215	579.3319867548784	98.706	1.5764	98.706	97.912	99.488	0					101	37	4	0	0	0	0.37436	1	10895	10895		71.877	0.58177	1	12142000	+		3876	32582	2975	2985	5215	5215					0.07313068706230297
DELVIKLML	9	Unmodified	_DELVIKLML_					0	0	0		ENSG00000155085|ENST00000424296|AK9;nc|ENSG00000155085|Q5TCS8-3|AK9;nc|ENSG00000155085|Q5TCS8-6|AK9;nc|ENSG00000155085|Q5TCS8-2|AK9;nc|ENSG00000155085|Q5TCS8-1|AK9	ENSG00000155085|ENST00000424296|AK9	ENSG00000155085|ENST00000424296|AK9	MULTI-MSMS	OvCa99_classI_Rep5	1	537.3164672851562	2	537.317386	1072.62022	2.0363	0.0010941	-3.3661	-0.0018087	-1.3299	-0.00071456	537.3154328973161	136.67	0.91095	136.67	136.39	137.3	0					41	18	3	0	0	0	0.13482	1	15943	15943		87.754	10.98	1	431800			3877	5767	2976	2986	5216	5216					0.0868129757927818
DELVPIVKV	9	Unmodified	_DELVPIVKV_					0	0	0			REV__ENSG00000103253|ENST00000389703|HAGHL	REV__ENSG00000103253|ENST00000389703|HAGHL	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.31134033203125	2	506.307875	1010.6012	1.9423	0.00098338	3.5963	0.0018208	5.5386	0.0028042	506.3093042985813	78.113	1.6563	78.113	77.422	79.079	0					55	39	2	0	0	0	0.027462	1	7822	7822		7.1934	0	1	371770	+		3878	17608	2977	2987	5217	5217					0.09632084279905939
DELVTRISH	9	Unmodified	_DELVTRISH_					0	0	0			REV__tr|A0A553SU35|A0A553SU35_NIACIXyloseisomerase-likeTIMbarreldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06265PE=4SV=1	REV__tr|A0A553SU35|A0A553SU35_NIACIXyloseisomerase-likeTIMbarreldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06265PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.2467651367188	2	535.285463	1068.55637	0.71664	0.00038361	3.2686	0.0017496	3.9853	0.0021332	535.2868276140836	114.73	1.6778	113.67	113.35	115.03	-1.055					60	33	3	0	0	0	0.027447	1	8508	8508		39.253	8.9351	1	239280	+		3879	31034	2978	2988	5218	5218					0.024836534665837462
DEMAQPTQ	8	Unmodified	_DEMAQPTQ_					0	0	0			REV__tr|A0A553SU28|A0A553SU28_NIACIIS3familytransposaseOS=NialliacirculansOX=1397GN=CEQ21_06205PE=4SV=1	REV__tr|A0A553SU28|A0A553SU28_NIACIIS3familytransposaseOS=NialliacirculansOX=1397GN=CEQ21_06205PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	459.2173767089844	2	460.194925	918.375297	2.3167	0.0010661	0.85386	0.00039294	3.1706	0.0014591	460.1952549710695	86.115	0.2778	86.115	85.954	86.231	0					9	6	2	0	0	0	0.028476	1	9050	9050		29.15	6.1071	1	173760	+		3880	30869	2979	2989	5219	5219					-0.08715607901649491
DENDVVLPL	9	Unmodified	_DENDVVLPL_					0	0	0		tr|A0A553SHI7|A0A553SHI7_NIACIStage0sporulationproteinOS=NialliacirculansOX=1397GN=CEQ21_12995PE=4SV=1	tr|A0A553SHI7|A0A553SHI7_NIACIStage0sporulationproteinOS=NialliacirculansOX=1397GN=CEQ21_12995PE=4SV=1	tr|A0A553SHI7|A0A553SHI7_NIACIStage0sporulationproteinOS=NialliacirculansOX=1397GN=CEQ21_12995PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.811767578125	2	507.261122	1012.50769	-2.4509	-0.0012432	0.23792	0.00012069	-2.2129	-0.0011225	507.2611363216895	103.93	0.54971	103.93	103.73	104.28	0					17	12	2	0	0	0	0.027326	1	11616	11616		88.643	38.618	1	320670			3881	33278	2980	2990	5220	5220					0.001937401068289546
DENGLIIVW	9	Unmodified	_DENGLIIVW_					0	0	0		nc|ENSG00000118965|Q9P2L0|WDR35;ENSG00000118965|ENST00000281405|WDR35	nc|ENSG00000118965|Q9P2L0|WDR35	nc|ENSG00000118965|Q9P2L0|WDR35	MULTI-MSMS	OvCa9_classI_Rep3	3	530.2786865234375	2	529.779482	1057.54441	-0.65218	-0.00034551	-4.4295	-0.0023467	-5.0817	-0.0026922	529.7774860524519	94.57	2.098	92.675	92.307	94.404	-1.8956					111	41	4	0	0	0	0.11171	1	6146	6146		94.006	0.40885	1	2592600			3882	3334	2981	2991	5221	5221					0.017940367234132282
DENKFKNKI	9	Unmodified	_DENKFKNKI_					0	0	0			REV__nc|ENSG00000112742|P33981-2|TTK	REV__nc|ENSG00000112742|P33981-2|TTK	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.3324584960938	2	568.308938	1134.60332	2.7774	0.0015784	0.5895	0.00033502	3.3669	0.0019134	568.3090040104101	86.555	0.5414	86.555	86.389	86.931	0					28	12	4	0	0	0	0.027462	1	9181	9181		44.117	6.3053	1	508620	+		3883	16083	2982	2992	5222	5222					0.04140513017705416
DENLIYWPR	9	Unmodified	_DENLIYWPR_					0	0	0		ENSG00000198042|ENST00000360128|MAK16;ENST00000520763.5_1_8:33342724-33346658:+|nuORF	ENSG00000198042|ENST00000360128|MAK16	ENSG00000198042|ENST00000360128|MAK16	MULTI-MSMS	OvCa99_classI_Rep5	1	603.3045043945312	2	603.301113	1204.58767	2.1249	0.0012819	3.3168	0.0020011	5.4417	0.003283	603.8046381545558	112.99	3.5867	112.99	111.16	114.74	0					164	80	3	0	0	0	0.38529	1	12917	12917		53.351	3.8154	1	1182000			3884	8776	2983	2993	5223	5223					-0.006437734993824051
DENLNDKIQ	9	Unmodified	_DENLNDKIQ_					0	0	0		tr|A0A7D7A2H6|A0A7D7A2H6_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16950PE=4SV=1	tr|A0A7D7A2H6|A0A7D7A2H6_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16950PE=4SV=1	tr|A0A7D7A2H6|A0A7D7A2H6_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16950PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	543.7951049804688	2	544.76456	1087.51457	-0.10742	-5.8517E-05	3.8812	0.0021143	3.7738	0.0020558	544.7665954041807	108.54	1.1832	107.34	106.9	108.09	-1.1978					64	22	4	0	0	0	0.027279	1	7706	7706		82.305	10.428	1	117830			3885	36078	2984	2994	5224	5224					-0.025689470126280867
DENNVKSLT	9	Unmodified	_DENNVKSLT_					0	0	0			REV__ENSG00000085832|ENST00000371733|EPS15	REV__ENSG00000085832|ENST00000371733|EPS15	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.2644348144531	2	510.253828	1018.4931	-0.14513	-7.4055E-05	-0.13199	-6.7346E-05	-0.27712	-0.0001414	510.2536559191337	60.332	0.86205	60.332	59.997	60.859	0					47	20	3	0	0	0	0.027462	1	5303	5303		14.137	0	1	1583000	+		3886	17141	2985	2995	5225	5225					-0.015403320413270194
DENRDDRI	8	Unmodified	_DENRDDRI_					0	0	0			REV__EZR|p.E515D|1|0.28|ENSG00000092820|chr6:158767312-158767312|C/G|missense_variant	REV__EZR|p.E515D|1|0.28|ENSG00000092820|chr6:158767312-158767312|C/G|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	516.7391357421875	2	516.738877	1031.4632	1.8397	0.00095063	-3.243	-0.0016758	-1.4034	-0.00072518	516.7371115338104	80.642	0.93169	80.642	80.274	81.206	0					44	21	3	0	0	0	0.64026	1	8267	8267		55.504	0	1	1748600	+		3887	28123	2986	2996	5226	5226					-0.05127270986668009
DENTKHYEL	9	Unmodified	_DENTKHYEL_					0	0	0		FLOT2-PHF12|1|fusion;nc|ENSG00000109118|Q96QT6-4|PHF12;ENSG00000109118|ENST00000332830|PHF12	FLOT2-PHF12|1|fusion	FLOT2-PHF12|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.8141479492188	2	574.76456	1147.51457	1.5215	0.0008745	-3.181	-0.0018283	-1.6595	-0.00095381	574.7627443117302	116.99	0.22675	116.99	116.91	117.13	0					6	4	2	0	0	0	0.027017	1	13406	13406		62.107	0	1	118390			3888	2701	2987	2997	5227	5227					-0.05328947012617391
DENVYYNL	8	Unmodified	_DENVYYNL_					0	0	0			REV__ENST00000358495.7_1_12:1022026-1022377:-|nuORF	REV__ENST00000358495.7_1_12:1022026-1022377:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.3108520507812	2	515.229822	1028.44509	2.0352	0.0010486	-0.84953	-0.0004377	1.1856	0.00061088	515.2298177979784	95.817	0.21289	95.817	95.656	95.869	0					6	4	2	0	0	0	0.028476	1	10471	10471		53.351	17.733	1	59838	+		3889	24799	2988	2998	5228	5228					-0.06799405961396587
DENYLRKI	8	Unmodified	_DENYLRKI_					0	0	0			REV__nc|ENSG00000118816|Q14094-2|CCNI	REV__nc|ENSG00000118816|Q14094-2|CCNI	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.7701416015625	2	525.782556	1049.55056	2.122	0.0011157	-1.4583	-0.00076675	0.66373	0.00034898	525.7816404023572	91.562	0.54667	91.562	91.332	91.879	0					20	12	2	0	0	0	0.028476	1	9895	9895		49.442	7.0454	1	282340	+		3890	18416	2989	2999	5229	5229					0.027765549549030766
DEPATIRQ	8	Unmodified	_DEPATIRQ_					0	0	0		E2F7|p.K611I|1|0.36|ENSG00000165891|chr12:77029883-77029883|T/A|missense_variant	E2F7|p.K611I|1|0.36|ENSG00000165891|chr12:77029883-77029883|T/A|missense_variant	E2F7|p.K611I|1|0.36|ENSG00000165891|chr12:77029883-77029883|T/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	465.7535095214844	2	465.237981	928.461409	-1.2631	-0.00058765	0.77404	0.00036011	-0.48908	-0.00022754	465.2382201786349	52.641	0.88705	49.828	49.543	50.43	-2.8132					25	17	2	0	0	0	0.028476	1	3589	3589		29.15	8.2026	1	30938			3891	773	2990	3000	5230	5230					-0.005682800046088232
DEPKKGVKPKL	11	Unmodified	_DEPKKGVKPKL_					0	0	0		ENSG00000164309|ENST00000446378|CMYA5;CMYA5|p.I1537Hfs*7|1|0.1|ENSG00000164309|chr5:79733373-79733374|-/C|frameshift_variant;CMYA5|p.L2315Tfs*2|1|0.05|ENSG00000164309|chr5:79735707-79735708|-/A|frameshift_variant	ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.87841796875	2	619.876988	1237.73942	0.95751	0.00059354	-1.3379	-0.00082932	-0.38037	-0.00023578	619.8763018361122	140.29	1.1669	138.8	138.2	139.37	-1.4952					41	22	3	0	0	0	0.70142	1	13694	13694		29.17	1.2878	1	37394			3892	6445	2991	3001	5231	5231					0.1300620752838313
DEPKKGVKPKL	11	Unmodified	_DEPKKGVKPKL_					0	0	0		ENSG00000164309|ENST00000446378|CMYA5;CMYA5|p.I1537Hfs*7|1|0.1|ENSG00000164309|chr5:79733373-79733374|-/C|frameshift_variant;CMYA5|p.L2315Tfs*2|1|0.05|ENSG00000164309|chr5:79735707-79735708|-/A|frameshift_variant	ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	619.876988	1237.73942	-1.4414	-0.00089349	0.57895	0.00035888	-0.86245	-0.00053461	619.8778099809094	138.67	0.63748	138.45	138.22	138.86	-0.22696	-0.23296	0.00078497	NaN	29.17	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16965			3893	6445	2991	3001							0.1300620752838313
DEPKKGVKPKL	11	Unmodified	_DEPKKGVKPKL_					0	0	0		ENSG00000164309|ENST00000446378|CMYA5;CMYA5|p.I1537Hfs*7|1|0.1|ENSG00000164309|chr5:79733373-79733374|-/C|frameshift_variant;CMYA5|p.L2315Tfs*2|1|0.05|ENSG00000164309|chr5:79735707-79735708|-/A|frameshift_variant	ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	619.876988	1237.73942	-0.9061	-0.00056167	0.60956	0.00037785	-0.29654	-0.00018382	619.8774567646072	139.83	0.83774	138.79	138.45	139.28	-1.0339	0.11636	0.00082291	NaN	29.17	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30201			3894	6445	2991	3001							0.1300620752838313
DEPLTSSI	8	Unmodified	_DEPLTSSI_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	OvCa9_classI_Rep4_	4	431.5677490234375	2	431.21364	860.412728	0.34133	0.00014718	0.59743	0.00025762	0.93876	0.0004048	431.21377260515544	74.024	1	70.793	70.483	71.483	-3.2308					28	20	2	0	0	0	0.028476	1	5757	5757		30.504	0	1	58456	+		3895	22219	2992	3002	5232	5232					-0.023061933643703014
DEPLTSSI	8	Unmodified	_DEPLTSSI_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MATCH	OvCa99_classI_Rep5	1		2	431.21364	860.412728	0.33631	0.00014502	1.9893	0.0008578	2.3256	0.0010028	431.21429511049723	70.661	0.4268	70.661	70.488	70.915	0	-0.066264	0.00077787	NaN	30.504	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	501980	+		3896	22219	2992	3002							-0.023061933643703014
DEPQEDAKEL	10	Unmodified	_DEPQEDAKEL_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	OvCa9_classI_Rep3	3	587.26806640625	2	587.267133	1172.51971	-3.1111	-0.001827	3.3158	0.0019473	0.20474	0.00012024	587.2687165321146	138.45	0.88092	137.39	137.1	137.98	-1.0595					32	17	3	0	0	0	0.67987	1	11324	11324		32.751	5.7032	1	35194			3897	1888	2993	3003	5233	5233					-0.059646879406500375
DEPQEDAKEL	10	Unmodified	_DEPQEDAKEL_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	587.267133	1172.51971	1.1318	0.00066467	-0.37711	-0.00022146	0.75469	0.0004432	587.2664566398347	138.92	1.0788	137.39	137.09	138.17	-1.5284	0.0013088	-0.002824	NaN	32.751	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33956			3898	1888	2993	3003							-0.059646879406500375
DEPTNNLDI	9	Unmodified	_DEPTNNLDI_					0	0	0		nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1	nc|ENSG00000204574|Q8NE71-2|ABCF1	nc|ENSG00000204574|Q8NE71-2|ABCF1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.740234375	2	515.738011	1029.46147	-0.31057	-0.00016017	1.955	0.0010082	1.6444	0.00084807	515.7388320879502	71.598	0.48624	71.598	71.349	71.835	0					28	11	3	0	0	0	0.3249	1	6930	6930		60.118	1.3363	1	2131900			3899	15270	2994	3004	5234	5234					-0.0520832479528508
DEPTNNLDI	9	Unmodified	_DEPTNNLDI_					0	0	0		nc|ENSG00000204574|Q8NE71-2|ABCF1;ENSG00000204574|ENST00000326195|ABCF1	nc|ENSG00000204574|Q8NE71-2|ABCF1	nc|ENSG00000204574|Q8NE71-2|ABCF1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	515.738011	1029.46147	0.26436	0.00013634	0.19628	0.00010123	0.46064	0.00023757	515.738098294423	74.048	0.93932	71.56	71.324	72.264	-2.4873	-0.018659	-0.00091111	NaN	60.118	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24862			3900	15270	2994	3004							-0.0520832479528508
DEPVIVAG	8	Unmodified	_DEPVIVAG_					0	0	0			REV__ENST00000270645.7_1_19:50046533-50046872:+|nuORF	REV__ENST00000270645.7_1_19:50046533-50046872:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.1985168457031	2	400.213443	798.412334	1.2167	0.00048694	-3.5424	-0.0014177	-2.3257	-0.00093077	400.2112942191073	56.269	0.60618	56.269	55.932	56.538	0					20	14	2	0	0	0	0.028476	1	4648	4648		1.3276	0	1	235380	+		3901	24071	2995	3005	5235	5235					0.005064317064238821
DEPVQAHIQL	10	Unmodified	_DEPVQAHIQL_					0	0	0			REV__ENST00000527610.1_1_11:65487256-65487289:-|nuORF	REV__ENST00000527610.1_1_11:65487256-65487289:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	575.3009033203125	2	575.29857	1148.58259	2.5013	0.001439	-0.40799	-0.00023471	2.0933	0.0012043	575.2983249118558	96.277	1.2274	96.277	95.997	97.225	0					88	28	5	0	0	0	0.45822	1	10524	10524		60.118	10.582	1	13266000	+		3902	27155	2996	3006	5236	5236					0.014239226380595937
DEPVRQIRHKR	11	Unmodified	_DEPVRQIRHKR_					0	0	0			REV__ENSG00000115084|ENST00000245680|SLC35F5	REV__ENSG00000115084|ENST00000245680|SLC35F5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.76702880859375	3	478.607652	1432.80113	-0.50471	-0.00024156	1.9442	0.00093051	1.4395	0.00068895	478.60851949145047	89.046	0.34348	86.444	86.237	86.58	-2.6027					9	6	2	0	0	0	0.026283	1	7606	7606		14.779	0	1	15940	+		3903	18216	2997	3007	5237	5237					0.10203952000210847
DEPVSIKDD	9	Unmodified	_DEPVSIKDD_					0	0	0			REV__ENSG00000139865|ENST00000553443|TTC6	REV__ENSG00000139865|ENST00000553443|TTC6	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7884826660156	2	509.240386	1016.46622	1.9074	0.00097134	0.50517	0.00025725	2.4126	0.0012286	509.240443491705	96.89	0.68309	96.89	96.625	97.309	0					31	15	3	0	0	0	0.027402	1	10598	10598		66.429	6.1353	1	675580	+		3904	19638	2998	3008	5238	5238					-0.04135440652521538
DEPVSIPIEI	10	Unmodified	_DEPVSIPIEI_					0	0	0			REV__ENSG00000175105|ENST00000636215|ZNF654	REV__ENSG00000175105|ENST00000636215|ZNF654	MULTI-MSMS	OvCa9_classI_Rep4_	4	556.2965087890625	2	556.297704	1110.58086	-0.88867	-0.00049436	-0.16293	-9.064E-05	-1.0516	-0.000585	556.297489303825	146.66	1.1662	145.22	144.86	146.02	-1.4357					51	22	3	0	0	0	0.66721	1	14437	14437		34.173	0.25091	1	134020	+		3905	21870	2999	3009	5239	5239					0.02998868829422463
DEQKKACFL	9	Unmodified	_DEQKKACFL_					0	0	0			REV__ENSG00000182957|ENST00000382108|SPATA13	REV__ENSG00000182957|ENST00000382108|SPATA13	MULTI-MSMS	OvCa99_classI_Rep5	1	541.2705688476562	2	541.270967	1080.52738	1.0325	0.00055886	-0.67184	-0.00036365	0.36066	0.00019521	541.2704714903289	156.43	0.80559	156.43	156.09	156.9	0					27	15	2	0	0	0	0.34496	1	18344	18344		57.811	6.6186	1	244390	+		3906	22329	3000	3010	5240	5240					-0.00966207154078802
DEQKLHLPD	9	Unmodified	_DEQKLHLPD_					0	0	0		sp|Q6SW87|RIR1_HCMVMRibonucleoside-diphosphatereductaselargesubunit-likeproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=RIR1PE=3SV=1;sp|P16782|RIR1_HCMVARibonucleoside-diphosphatereductaselargesubunit-likeproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=RIR1PE=3SV=1	sp|Q6SW87|RIR1_HCMVMRibonucleoside-diphosphatereductaselargesubunit-likeproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=RIR1PE=3SV=1	sp|Q6SW87|RIR1_HCMVMRibonucleoside-diphosphatereductaselargesubunit-likeproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=RIR1PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.3471069335938	2	547.77747	1093.54039	2.388	0.0013081	-0.46024	-0.00025211	1.9278	0.001056	547.777208777248	89.161	0.47148	89.161	88.922	89.394	0					23	11	4	0	0	0	0.027446	1	9500	9500		42.864	12.361	1	776320			3907	32897	3001	3011	5241	5241					-0.0026405277033063612
DEQLLKDGTV	10	Unmodified	_DEQLLKDGTV_					0	0	0		tr|A0A553SKN2|A0A553SKN2_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_19170PE=3SV=1	tr|A0A553SKN2|A0A553SKN2_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_19170PE=3SV=1	tr|A0A553SKN2|A0A553SKN2_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_19170PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	558.3096923828125	2	559.290411	1116.56627	0.25156	0.00014069	-1.1082	-0.00061981	-0.85665	-0.00047912	559.2894206499325	87.357	0.80524	84.73	84.3	85.105	-2.6269					35	15	3	0	0	0	0.02706	1	7456	7456		12.207	5.4711	1	63660			3908	33636	3002	3012	5242	5242					0.012647966812892264
DEQLLKDGTV	10	Unmodified	_DEQLLKDGTV_					0	0	0		tr|A0A553SKN2|A0A553SKN2_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_19170PE=3SV=1	tr|A0A553SKN2|A0A553SKN2_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_19170PE=3SV=1	tr|A0A553SKN2|A0A553SKN2_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_19170PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	559.290411	1116.56627	-1.4007	-0.00078339	1.2619	0.00070575	-0.13882	-7.7638E-05	559.2906280981992	86.88	1.109	84.704	84.081	85.19	-2.1768	-0.10839	0.0015704	NaN	16.007	39	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74284			3909	33636	3002	3012							0.012647966812892264
DEQMRVQFNQ	10	Unmodified	_DEQMRVQFNQ_					0	0	0			REV__ENSG00000204406|ENST00000642680|MBD5	REV__ENSG00000204406|ENST00000642680|MBD5	MULTI-SECPEP	OvCa99_classI_Rep5	1	647.8219604492188	2	647.795869	1293.57718	1.8857	0.0012216	-0.46799	-0.00030316	1.4177	0.00091839	647.7948470426026	135.11	0.64655	135.11	134.86	135.5	0					18	13	3	0	0	0	0.02792	1	15780	15780		90.37	0	1	135630	+		3910	23153	3003	3013	5243	5243					-0.05786124216047028
DEQSHLNQ	8	Unmodified	_DEQSHLNQ_					0	0	0			REV__chr20:32460029-32474601|343|12.31|0.3|5.36|-|2|None,NOL4L|1	REV__chr20:32460029-32474601|343|12.31|0.3|5.36|-|2|None,NOL4L|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.7467956542969	2	485.71487	969.415188	-0.82372	-0.00040009	2.7068	0.0013147	1.8831	0.00091464	485.7158022437222	53.454	0.21618	53.454	53.347	53.564	0					5	4	2	0	0	0	0.028476	1	4238	4238		40.778	6.6056	1	76333	+		3911	16014	3004	3014	5244	5244					-0.07074344906709484
DERANLPEI	9	Unmodified	_DERANLPEI_					0	0	0		ENST00000587908.1_1_19:56832840-56833431:-|nuORF	ENST00000587908.1_1_19:56832840-56833431:-|nuORF	ENST00000587908.1_1_19:56832840-56833431:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.7703857421875	2	528.769645	1055.52474	-0.50689	-0.00026803	0.27045	0.00014301	-0.23643	-0.00012502	528.769711624685	64.482	1.6495	61.007	60.588	62.237	-3.4757					76	33	4	0	0	0	0.053172	2	4599	4587;4599		116.9	20.713	1	1468800			3912	14071	3005	3015	5245;5246	5246					-0.0008033928741042473
DERANLPEI	9	Unmodified	_DERANLPEI_					0	0	0		ENST00000587908.1_1_19:56832840-56833431:-|nuORF	ENST00000587908.1_1_19:56832840-56833431:-|nuORF	ENST00000587908.1_1_19:56832840-56833431:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	528.769645	1055.52474	-1.4778	-0.00078143	1.2772	0.00067537	-0.20059	-0.00010606	528.7702429841668	63.786	1.3641	61.042	60.586	61.95	-2.7444	0.017566	0.00057279	NaN	116.9	60	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240810			3913	14071	3005	3015							-0.0008033928741042473
DEREPWVLF	9	Unmodified	_DEREPWVLF_					0	0	0			REV__nc|ENSG00000249715|A0AVI2-4|FER1L5	REV__nc|ENSG00000249715|A0AVI2-4|FER1L5	MULTI-SECPEP	OvCa99_classI_Rep5	1	595.3239135742188	2	595.795663	1189.57677	1.5488	0.00092278	2.7001	0.0016087	4.2489	0.0025315	595.7973589079159	119.07	0.32974	119.07	118.96	119.29	0					10	6	2	0	0	0	0.027462	1	13662	13662		38.806	12.113	1	68956	+		3914	23490	3006	3016	5247	5247					-0.010431758736331176
DERGPSNQV	9	Unmodified	_DERGPSNQV_					0	0	0			REV__ENST00000481947.1_1_16:106326-107140:+|nuORF	REV__ENST00000481947.1_1_16:106326-107140:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.7992858886719	2	501.23597	1000.45739	-0.4106	-0.00020581	2.0354	0.0010202	1.6248	0.00081441	501.2369267231283	43.279	0.59432	43.279	43.1	43.694	0					19	13	2	0	0	0	0.027403	1	2839	2839		69.628	28.849	1	290110	+		3915	26492	3007	3017	5248	5248					-0.04282369498321259
DERHGRPL	8	Unmodified	_DERHGRPL_					0	0	0		nc|ENSG00000279847|E5RJ46|LINC02906	nc|ENSG00000279847|E5RJ46|LINC02906	nc|ENSG00000279847|E5RJ46|LINC02906	MULTI-SECPEP	OvCa9_classI_Rep2	2	490.7366027832031	2	490.25704	978.499526	0.27314	0.00013391	-2.5383	-0.0012444	-2.2651	-0.0011105	490.25827159776486	77.951	0.36676	76.162	75.937	76.304	-1.7894					14	6	3	0	0	0	0.028476	1	6503	6503		35.201	0	1	10529			3916	15376	3008	3018	5249	5249					0.009416507007017572
DERKKSKI	8	Unmodified	_DERKKSKI_					0	0	0		ENST00000478161.5_1_18:3722450-3874706:-|nuORF	ENST00000478161.5_1_18:3722450-3874706:-|nuORF	ENST00000478161.5_1_18:3722450-3874706:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.3016052246094	2	502.298373	1002.58219	-0.96683	-0.00048564	3.2357	0.0016253	2.2689	0.0011397	502.2997947943495	104.23	0.89241	102.11	101.8	102.69	-2.1192					29	16	3	0	0	0	0.028476	1	9460	9460		87.754	4.4671	1	15960			3917	12488	3009	3019	5250	5250					0.08100547708852446
DERKKSKI	8	Unmodified	_DERKKSKI_					0	0	0		ENST00000478161.5_1_18:3722450-3874706:-|nuORF	ENST00000478161.5_1_18:3722450-3874706:-|nuORF	ENST00000478161.5_1_18:3722450-3874706:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	502.298373	1002.58219	-1.5849	-0.00079612	3.4118	0.0017137	1.8268	0.00091762	502.3004070167968	102.76	0.59176	102.08	101.69	102.28	-0.68459	-0.017669	8.989E-05	NaN	87.754	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26947			3918	12488	3009	3019							0.08100547708852446
DERKLVSMV	9	Oxidation (M)	_DERKLVSM(Oxidation (M))V_		DERKLVSM(1)V		DERKLVSM(51)V	0	0	1			REV__tr|A0A7D6VT10|A0A7D6VT10_9CLOTSugartransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18790PE=3SV=1	REV__tr|A0A7D6VT10|A0A7D6VT10_9CLOTSugartransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18790PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	546.7900390625	2	546.789524	1091.56449	0.88293	0.00048278	-1.9106	-0.0010447	-1.0277	-0.00056192	546.7883836823588	139.32	2.1506	139.32	138.88	141.03	0					78	44	3	0	0	0	0.40667	1	16248	16248		51.335	8.4712	1	147180	+		3919	31564	3010	3020	5251	5251		700			0.022374643916919013
DERKSIEEA	9	Unmodified	_DERKSIEEA_					0	0	0			REV__CACNA1G|p.L1529Qfs*112|1|0.06|ENSG00000006283|chr17:50607900-50607901|TG/-|frameshift_variant	REV__CACNA1G|p.L1529Qfs*112|1|0.06|ENSG00000006283|chr17:50607900-50607901|TG/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.302734375	2	538.76456	1075.51457	0.2917	0.00015716	1.1666	0.00062853	1.4583	0.00078568	538.7652553746871	90.544	0.71535	88.464	88.108	88.823	-2.0805					14	13	2	0	0	0	0.027441	1	5624	5624		58.782	14.405	1	15888	+		3920	15728	3011	3021	5252	5252					-0.02016947012612036
DERKTNLMVN	10	Unmodified	_DERKTNLMVN_					0	0	0		ENSG00000145241|ENST00000273853|CENPC	ENSG00000145241|ENST00000273853|CENPC	ENSG00000145241|ENST00000273853|CENPC	MSMS	OvCa99_classI_Rep5	1	407.20684814453125	3	407.208167	1218.60267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.072	1	21.072	20.572	21.572	0								0	0	0	0.14686	1	88	88		15.333	2.5214	1				3921	5210	3012	3022	5253	5253					0.0021135030635832663
DERLEKLR	8	Unmodified	_DERLEKLR_					0	0	0		tr|A0A553SJ12|A0A553SJ12_NIACIUvrABCsystemproteinBOS=NialliacirculansOX=1397GN=uvrBPE=3SV=1	tr|A0A553SJ12|A0A553SJ12_NIACIUvrABCsystemproteinBOS=NialliacirculansOX=1397GN=uvrBPE=3SV=1	tr|A0A553SJ12|A0A553SJ12_NIACIUvrABCsystemproteinBOS=NialliacirculansOX=1397GN=uvrBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.793212890625	2	529.80128	1057.58801	0.54989	0.00029133	-0.10693	-5.6653E-05	0.44296	0.00023468	529.8011770730607	63.482	0.47112	63.482	63.219	63.69	0					19	8	3	0	0	0	0.028476	1	5737	5737		31.955	0	1	1848600			3922	33451	3013	3023	5254	5254					0.06151646220496332
DERLKEEL	8	Unmodified	_DERLKEEL_					0	0	0		tr|A0A553STJ0|A0A553STJ0_NIACICarbohydratediacidregulatorOS=NialliacirculansOX=1397GN=CEQ21_05100PE=3SV=1	tr|A0A553STJ0|A0A553STJ0_NIACICarbohydratediacidregulatorOS=NialliacirculansOX=1397GN=CEQ21_05100PE=3SV=1	tr|A0A553STJ0|A0A553STJ0_NIACICarbohydratediacidregulatorOS=NialliacirculansOX=1397GN=CEQ21_05100PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.2730102539062	2	516.272021	1030.52949	-0.83522	-0.0004312	1.5811	0.00081628	0.74589	0.00038508	516.2724179692997	79.955	1.37	77.203	77.034	78.404	-2.7514					63	27	3	0	0	0	0.4531	1	6519	6519		82.241	0	1	944990			3923	34494	3014	3024	5255	5255					0.015445448553691676
DERPESVE	8	Unmodified	_DERPESVE_					0	0	0			REV__ENST00000296027.4_1_4:74863223-74863334:-|nuORF	REV__ENST00000296027.4_1_4:74863223-74863334:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.75079345703125	2	480.717079	959.419604	-1.5238	-0.00073253	2.4458	0.0011757	0.92194	0.00044319	480.7174478288749	48.975	0.26235	45.849	45.744	46.006	-3.1255					6	4	2	0	0	0	0.028476	1	2743	2743		27.882	3.6795	1	12001	+		3924	24197	3015	3025	5256	5256					-0.06172880483802601
DERQALAE	8	Unmodified	_DERQALAE_					0	0	0			REV__ENST00000602716.5_1_19:49631560-49640169:+|nuORF	REV__ENST00000602716.5_1_19:49631560-49640169:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.282958984375	2	466.227613	930.440674	-0.66915	-0.00031197	-1.2331	-0.00057492	-1.9023	-0.00088689	466.22675996465256	73.91	0.37536	70.68	70.531	70.906	-3.2308					9	7	2	0	0	0	0.028476	1	5747	5747		42.396	0	1	14963	+		3925	22001	3016	3026	5257	5257					-0.027328703842840696
DERYKLVL	8	Unmodified	_DERYKLVL_					0	0	0			REV__ENSG00000029725|ENST00000537505|RABEP1	REV__ENSG00000029725|ENST00000537505|RABEP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.2962036132812	2	518.295299	1034.57605	-0.7282	-0.00037742	-0.16711	-8.6612E-05	-0.89531	-0.00046404	518.2952267332782	93.923	2.6605	91.416	91.171	93.831	-2.5072					159	53	5	0	0	0	0.61436	1	8258	8258		60.972	0.67798	1	7836100	+		3926	16583	3017	3027	5258	5258					0.06014029477319127
DESAFQVLD	9	Unmodified	_DESAFQVLD_					0	0	0		tr|A0A7D7A231|A0A7D7A231_9CLOTDUF4878domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18000PE=4SV=1	tr|A0A7D7A231|A0A7D7A231_9CLOTDUF4878domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18000PE=4SV=1	tr|A0A7D7A231|A0A7D7A231_9CLOTDUF4878domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18000PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.2850036621094	2	512.235104	1022.45566	1.7845	0.00091406	0.56295	0.00028836	2.3474	0.0012024	512.2355234140156	93.766	0.2504	93.766	93.59	93.841	0					7	5	2	0	0	0	0.027447	1	10176	10176		39.253	5.0803	1	226900			3927	36059	3018	3028	5259	5259					-0.05467423306959063
DESDPHNI	8	Unmodified	_DESDPHNI_					0	0	0			REV__ENSG00000126790|ENST00000247194|L3HYPDH	REV__ENSG00000126790|ENST00000247194|L3HYPDH	MULTI-SECPEP	OvCa99_classI_Rep5	1	462.73724365234375	2	463.696146	925.377739	-0.89488	-0.00041495	-2.8428	-0.0013182	-3.7377	-0.0017332	463.6944594478703	27.216	0.29805	27.216	27.092	27.39	0					9	5	2	0	0	0	0.028476	1	776	776		38.806	0	1	51966	+		3928	18796	3019	3029	5260	5260					-0.08793436172334168
DESDTYRI	8	Unmodified	_DESDTYRI_					0	0	0			REV__tr|A0A7D7A5T1|A0A7D7A5T1_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07410PE=4SV=1	REV__tr|A0A7D7A5T1|A0A7D7A5T1_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07410PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.2489929199219	2	499.724904	997.435254	2.6865	0.0013425	1.5405	0.00076982	4.227	0.0021123	499.72589097620624	107.76	0.38153	107.76	107.56	107.94	0					9	8	2	0	0	0	0.028476	1	12166	12166		24.203	0	1	213480	+		3929	32642	3020	3030	5261	5261					-0.06356593966756918
DESEVSEHL	9	Unmodified	_DESEVSEHL_					0	0	0		nc|nan|Q9H6X5-2|C19orf44;ENSG00000105072|ENST00000221671|C19orf44	nc|nan|Q9H6X5-2|C19orf44	nc|nan|Q9H6X5-2|C19orf44	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.2970581054688	2	522.727643	1043.44073	-0.27626	-0.00014441	-3.7633	-0.0019672	-4.0396	-0.0021116	522.7255562584752	62.888	0.51598	62.888	62.703	63.219	0					19	12	2	0	0	0	0.027462	1	5640	5640		35.618	1.4457	1	377340			3930	2420	3021	3031	5262	5262					-0.0792491517495364
DESSYSNCVPI	11	Unmodified	_DESSYSNCVPI_					0	0	0		NRIP1|p.N1052Ifs*37|1|0.33|ENSG00000180530|chr21:14965013-14965038|TCTTGGAGAGTCTTTTTCATACTCAT/-|frameshift_variant;ENSG00000180530|ENST00000318948|NRIP1	NRIP1|p.N1052Ifs*37|1|0.33|ENSG00000180530|chr21:14965013-14965038|TCTTGGAGAGTCTTTTTCATACTCAT/-|frameshift_variant	NRIP1|p.N1052Ifs*37|1|0.33|ENSG00000180530|chr21:14965013-14965038|TCTTGGAGAGTCTTTTTCATACTCAT/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	607.2554931640625	2	607.255711	1212.49687	1.6276	0.00098836	-1.5071	-0.00091518	0.1205	7.3176E-05	607.2544972422013	111.94	0.7822	111.94	111.6	112.39	0					37	16	4	0	0	0	0.27273	1	12740	12740		70.399	22.439	1	352820			3931	7876	3022	3032	5263	5263					-0.1008803032977994
DESYDPPLLV	10	Unmodified	_DESYDPPLLV_					0	0	0			REV__chr16:2785646-2785799|320|125.99|0.22|9.19|-|ENST00000571674|PRSS33,PRSS33	REV__chr16:2785646-2785799|320|125.99|0.22|9.19|-|ENST00000571674|PRSS33,PRSS33	MULTI-SECPEP	OvCa9_classI_Rep3	3	574.3464965820312	2	574.279512	1146.54447	-1.5258	-0.00087622	2.7875	0.0016008	1.2617	0.00072457	574.2809095412822	101.1	0.31146	99.49	99.344	99.656	-1.6053					6	5	2	0	0	0	0.027021	1	6883	6883		21.96	13.266	1	5678.3	+		3932	15928	3023	3033	5264	5264					-0.022940080672924523
DESYVKIVQ	9	Unmodified	_DESYVKIVQ_					0	0	0			REV__ENST00000488342.5_1_2:165365032-165477819:-|nuORF	REV__ENST00000488342.5_1_2:165365032-165477819:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.3463745117188	2	540.782222	1079.54989	-0.26594	-0.00014381	-0.90765	-0.00049084	-1.1736	-0.00063465	540.7815196521278	82.158	1.2455	79.862	79.434	80.68	-2.2963					37	24	2	0	0	0	0.027392	1	4668	4668		35.618	0	1	220930	+		3933	18232	3024	3034	5265	5265					0.013297155151803963
DETFLVVL	8	Unmodified	_DETFLVVL_					0	0	0			REV__ENST00000480545.5_1_2:149987462-149987911:+|nuORF	REV__ENST00000480545.5_1_2:149987462-149987911:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	468.3066101074219	2	468.257851	934.501149	-0.138	-6.4618E-05	3.3558	0.0015714	3.2178	0.0015068	468.25922728225487	103.56	0.83647	101.44	101.17	102.01	-2.1192					28	15	3	0	0	0	0.028476	1	9356	9356		52.299	5.5327	1	19384	+		3934	26336	3025	3035	5266	5266					0.03127846946108548
DETQDYIFAL	10	Unmodified	_DETQDYIFAL_					0	0	0			REV__ENSG00000100290|ENST00000216115|BIK	REV__ENSG00000100290|ENST00000216115|BIK	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.88629150390625	3	405.524038	1213.55028	1.0849	0.00043997	2.4196	0.0009812	3.5045	0.0014212	405.5248664705966	35.643	0.41613	35.643	35.429	35.846	0					18	8	3	0	0	0	0.027088	1	1830	1830		9.6461	0	1	123800	+		3935	17392	3026	3036	5267	5267					-0.04794909555607774
DETSSNKVDQ	10	Unmodified	_DETSSNKVDQ_					0	0	0			REV__ENSG00000100207|ENST00000677622|TCF20	REV__ENSG00000100207|ENST00000677622|TCF20	MULTI-MSMS	OvCa9_classI_Rep3	3	561.749755859375	2	561.749107	1121.48366	1.0299	0.00057854	2.1016	0.0011805	3.1314	0.0017591	561.7502055190915	122.3	1.4686	121.28	120.8	122.27	-1.0286					42	27	2	0	0	0	0.69073	1	9398	9398		31.53	3.6476	1	102040	+		3936	17379	3027	3037	5268	5268					-0.07222145117498258
DETVLQEEAR	10	Unmodified	_DETVLQEEAR_					0	0	0		ENST00000564124.5_1_16:48580029-48653834:-|nuORF;ENSG00000102921|ENST00000262384|N4BP1	ENST00000564124.5_1_16:48580029-48653834:-|nuORF	ENST00000564124.5_1_16:48580029-48653834:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.8272705078125	2	595.288399	1188.56225	2.6977	0.0016059	0.68058	0.00040514	3.3783	0.0020111	595.2887816309966	75.65	0.58337	75.65	75.33	75.913	0					20	14	2	0	0	0	0.026968	1	7529	7529		22.58	0	1	442460			3937	2269	3028	3038	5269	5269					-0.024492928124118407
DETVPVQTT	9	Unmodified	_DETVPVQTT_					0	0	0			REV__nc|ENSG00000116731|Q13029-2|PRDM2	REV__nc|ENSG00000116731|Q13029-2|PRDM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.8144226074219	2	495.242929	988.471305	-0.37055	-0.00018351	4.1603	0.0020604	3.7898	0.0018769	495.2451217075396	70.512	0.62934	70.512	70.286	70.915	0					21	15	2	0	0	0	0.02744	1	6745	6745		44.377	0	1	2539800	+		3938	18317	3029	3039	5270	5270					-0.023391367898966564
DEVAERLMTI	10	Unmodified	_DEVAERLMTI_					0	0	0		nc|ENSG00000169282|Q14722-2|KCNAB1;nc|ENSG00000169282|Q14722-3|KCNAB1;ENSG00000169282|ENST00000490337|KCNAB1	nc|ENSG00000169282|Q14722-2|KCNAB1	nc|ENSG00000169282|Q14722-2|KCNAB1	MSMS	OvCa99_classI_Rep5	1	588.8023071289062	2	588.800088	1175.58562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.93	1	142.93	142.43	143.43	0								0	0	0	0.12201	1	16701	16701		60.118	7.0293	1				3939	6997	3030	3040	5271	5271					0.004854297005522312
DEVAQMYCL	9	Unmodified	_DEVAQMYCL_					0	0	0		PIK3CA|p.Q993Kfs*33|1|0.04|ENSG00000121879|chr3:179234132-179234133|-/GAAAGTAATCCTTAAACTTCATAAC|frameshift_variant;ENSG00000121879|ENST00000263967|PIK3CA	PIK3CA|p.Q993Kfs*33|1|0.04|ENSG00000121879|chr3:179234132-179234133|-/GAAAGTAATCCTTAAACTTCATAAC|frameshift_variant	PIK3CA|p.Q993Kfs*33|1|0.04|ENSG00000121879|chr3:179234132-179234133|-/GAAAGTAATCCTTAAACTTCATAAC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	536.2294311523438	2	536.22791	1070.44127	1.08	0.00057912	-0.79931	-0.00042861	0.28068	0.00015051	536.2273208913788	150.58	1.0041	150.58	150.29	151.3	0					46	19	3	0	0	0	0.31747	1	17618	17618		60.972	9.6365	1	422820			3940	3503	3031	3041	5272	5272					-0.0911353505111947
DEVDEEWL	8	Unmodified	_DEVDEEWL_					0	0	0			REV__ENST00000536663.5_1_12:122975500-122984530:-|nuORF	REV__ENST00000536663.5_1_12:122975500-122984530:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.287353515625	2	517.719287	1033.42402	-1.2882	-0.00066691	2.8477	0.0014743	1.5596	0.00080741	517.7206751102825	34.82	0.32497	34.82	34.632	34.957	0					10	6	2	0	0	0	0.028476	1	1708	1708		26.796	5.8492	1	41660	+		3941	27301	3032	3042	5273	5273					-0.09135416060917123
DEVDGLGVAR	10	Unmodified	_DEVDGLGVAR_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;ENST00000560418.1_2_15:90931573-90969358:+|nuORF	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.3114624023438	2	515.76182	1029.50909	-0.81938	-0.0004226	-0.27412	-0.00014138	-1.0935	-0.00056398	515.7615031579371	52.78	1.9729	49.572	48.994	50.967	-3.208					87	38	4	0	0	0	0.026551	1	3323	3323		51.193	0	1	174900			3942	4862	3033	3043	5274	5274					-0.004486258044153146
DEVFFSEKI	9	Unmodified	_DEVFFSEKI_					0	0	0		ENSG00000041357|ENST00000044462|PSMA4;ENST00000560033.5_1_15:78834730-78834988:+|nuORF;ENST00000557929.5_1_15:78834269-78838932:+|nuORF	ENSG00000041357|ENST00000044462|PSMA4	ENSG00000041357|ENST00000044462|PSMA4	MULTI-MSMS	OvCa9_classI_Rep3	3	557.27587890625	2	557.276772	1112.53899	1.1048	0.00061567	1.5197	0.00084692	2.6245	0.0014626	557.2760549947894	125.49	1.3009	124.44	124.11	125.41	-1.0519					74	24	5	0	0	0	0.29717	1	9764	9764		63.306	6.5852	1	92512			3943	1118	3034	3044	5275	5275					-0.012776868590890444
DEVFYERL	8	Unmodified	_DEVFYERL_					0	0	0			REV__nc|ENSG00000090530|Q8IVL5-2|P3H2	REV__nc|ENSG00000090530|Q8IVL5-2|P3H2	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.7638549804688	2	535.761289	1069.50803	-1.1202	-0.00060017	3.3214	0.0017795	2.2012	0.0011793	535.7630134743931	79.197	2.0761	76.446	76.132	78.208	-2.7514					95	42	4	0	0	0	0.66704	1	6467	6467		50.025	2.1089	1	1904000	+		3944	17225	3035	3045	5276	5276					-0.023948401733377978
DEVKFLTVL	9	Unmodified	_DEVKFLTVL_					0	0	0		nc|ENSG00000196975|P09525-2|ANXA4;nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4;ENST00000477632.5_1_2:70037634-70052644:+|nuORF;ENST00000471395.1_1_2:70043067-70043361:+|nuORF	nc|ENSG00000196975|P09525-2|ANXA4	nc|ENSG00000196975|P09525-2|ANXA4	MULTI-MSMS	OvCa9_classI_Rep2	2	532.3049926757812	2	532.305332	1062.59611	-0.23952	-0.0001275	0.20176	0.0001074	-0.037759	-2.0099E-05	532.3052418962925	130.83	0.99458	130.6	130.3	131.3	-0.22697					45	19	3	0	0	0	0.10502	4	12881	12874;12881;12887;12900		95.815	29.918	1	123590			3945	8667	3036	3046	5277;5278;5279;5280	5278					0.06731780417271693
DEVKFLTVL	9	Unmodified	_DEVKFLTVL_					0	0	0		nc|ENSG00000196975|P09525-2|ANXA4;nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4;ENST00000477632.5_1_2:70037634-70052644:+|nuORF;ENST00000471395.1_1_2:70043067-70043361:+|nuORF	nc|ENSG00000196975|P09525-2|ANXA4	nc|ENSG00000196975|P09525-2|ANXA4	MULTI-MSMS	OvCa9_classI_Rep3	3	532.3046875	2	532.305332	1062.59611	0.43674	0.00023248	-0.709	-0.00037741	-0.27226	-0.00014493	532.3047823726157	131.56	1.2401	130.43	130.15	131.39	-1.1249					57	24	3	0	0	0	0.22035	2	10485	10479;10485		72.879	16.158	1	104000			3946	8667	3036	3046	5281;5282	5282					0.06731780417271693
DEVKFLTVL	9	Unmodified	_DEVKFLTVL_					0	0	0		nc|ENSG00000196975|P09525-2|ANXA4;nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4;ENST00000477632.5_1_2:70037634-70052644:+|nuORF;ENST00000471395.1_1_2:70043067-70043361:+|nuORF	nc|ENSG00000196975|P09525-2|ANXA4	nc|ENSG00000196975|P09525-2|ANXA4	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.3046264648438	2	532.305332	1062.59611	3.0923	0.001646	-3.2555	-0.0017329	-0.16318	-8.6864E-05	532.3034719541184	131.91	1.1662	130.4	130.12	131.29	-1.5015					52	22	3	0	0	0	0.2784	2	12673	12673;12686		65.465	8.7443	1	150400			3947	8667	3036	3046	5283;5284	5283					0.06731780417271693
DEVKVVAR	8	Unmodified	_DEVKVVAR_					0	0	0		nc|ENSG00000185684|Q6ZTU2-5|EP400P1;nc|ENSG00000185684|Q6ZTU2-2|EP400P1;nc|ENSG00000185684|Q6ZTU2|EP400P1;nc|ENSG00000185684|Q6ZTU2-6|EP400P1;nc|ENSG00000185684|Q6ZTU2-4|EP400P1	nc|ENSG00000185684|Q6ZTU2-5|EP400P1	nc|ENSG00000185684|Q6ZTU2-5|EP400P1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	459.2566833496094	2	458.266542	914.51853	-0.9502	-0.00043544	-3.4382	-0.0015756	-4.3884	-0.0020111	458.2668166899341	55.388	1.2176	52.094	51.803	53.02	-3.2944					39	23	2	0	0	0	0.028476	1	3521	3521		23.042	8.3784	1	490270			3948	15216	3037	3047	5285	5285					0.05785187271760606
DEVKVVAR	8	Unmodified	_DEVKVVAR_					0	0	0		nc|ENSG00000185684|Q6ZTU2-5|EP400P1;nc|ENSG00000185684|Q6ZTU2-2|EP400P1;nc|ENSG00000185684|Q6ZTU2|EP400P1;nc|ENSG00000185684|Q6ZTU2-6|EP400P1;nc|ENSG00000185684|Q6ZTU2-4|EP400P1	nc|ENSG00000185684|Q6ZTU2-5|EP400P1	nc|ENSG00000185684|Q6ZTU2-5|EP400P1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	458.266542	914.51853	-0.36772	-0.00016851	-3.7547	-0.0017207	-4.1224	-0.0018892	458.2666971741585	55.143	1.2439	52.329	51.922	53.165	-2.8139	0.11767	-0.00015154	NaN	23.042	43	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60742			3949	15216	3037	3047							0.05785187271760606
DEVLRYIIK	9	Unmodified	_DEVLRYIIK_					0	0	0			REV__ENSG00000085760|ENST00000263629|MTIF2	REV__ENSG00000085760|ENST00000263629|MTIF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	574.8388671875	2	574.837331	1147.66011	-0.87533	-0.00050317	0.20724	0.00011913	-0.66808	-0.00038404	574.8373813616681	91.362	5.8049	88.819	88.449	94.254	-2.5425					226	116	5	0	0	0	0.38529	1	7958	7958		53.351	3.8154	1	3993100	+		3950	17140	3038	3048	5286	5286					0.09218560574208823
DEVLYCYEV	9	Unmodified	_DEVLYCYEV_					0	0	0		nc|ENSG00000110583|Q86UY6-4|NAA40;nc|ENSG00000110583|Q86UY6-3|NAA40;ENST00000534965.5_1_11:63706554-63721948:+|nuORF;ENSG00000110583|ENST00000377793|NAA40;ENST00000338447.10_1_11:63714317-63721948:+|nuORF	nc|ENSG00000110583|Q86UY6-4|NAA40	nc|ENSG00000110583|Q86UY6-4|NAA40	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.298828125	2	566.74699	1131.47943	1.9215	0.001089	-2.6963	-0.0015281	-0.77483	-0.00043913	567.2469177706571	135.06	0.13828	135.06	134.99	135.13	0					4	2	2	0	0	0	0.027462	1	15737	15737		16.473	0	1	17161			3951	2782	3039	3049	5287	5287					-0.08105325864789847
DEVQDKSIK	9	Unmodified	_DEVQDKSIK_					0	0	0			REV__ENSG00000116984|ENST00000366577|MTR	REV__ENSG00000116984|ENST00000366577|MTR	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.309814453125	2	531.277303	1060.54005	2.6159	0.0013898	-2.4511	-0.0013022	0.16475	8.7527E-05	531.2761803419719	94.371	0.85442	94.371	94.007	94.861	0					35	19	3	0	0	0	0.027462	1	10234	10234		47.657	3.5405	1	910210	+		3952	18328	3040	3050	5288	5288					0.012205275098040147
DEVQDKSIK	9	Unmodified	_DEVQDKSIK_					0	0	0			REV__ENSG00000116984|ENST00000366577|MTR	REV__ENSG00000116984|ENST00000366577|MTR	MULTI-MATCH	OvCa9_classI_Rep2	2		2	531.277303	1060.54005	-1.1097	-0.00058954	-8.5593	-0.0045474	-9.669	-0.0051369	531.271371692273	95.183	0.29607	94.155	93.923	94.219	-1.0281	-0.047121	-0.0064991	NaN	56.721	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8338.3	+		3953	18328	3040	3050							0.012205275098040147
DEVQDKSIK	9	Unmodified	_DEVQDKSIK_					0	0	0			REV__ENSG00000116984|ENST00000366577|MTR	REV__ENSG00000116984|ENST00000366577|MTR	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	531.277303	1060.54005	-0.46818	-0.00024873	4.3431	0.0023074	3.8749	0.0020586	531.2798299568137	96.507	0.20548	94.082	93.964	94.169	-2.4256	-0.12095	0.0072103	NaN	56.721	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10933	+		3954	18328	3040	3050							0.012205275098040147
DEVQEAFYLT	10	Unmodified	_DEVQEAFYLT_					0	0	0		HDAC3|p.G176E|1|0.05|ENSG00000171720|chr5:141629256-141629256|C/T|missense_variant	HDAC3|p.G176E|1|0.05|ENSG00000171720|chr5:141629256-141629256|C/T|missense_variant	HDAC3|p.G176E|1|0.05|ENSG00000171720|chr5:141629256-141629256|C/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	607.8694458007812	2	607.782418	1213.55028	0.42567	0.00025871	-1.8283	-0.0011112	-1.4026	-0.00085248	608.2833132727036	114.67	0.18498	114.67	114.6	114.79	0					5	3	2	0	0	0	0.026681	1	13088	13088		44.377	7.2181	1	22116			3955	14392	3041	3051	5289	5289					-0.04794909555630511
DEVQKNMLD	9	Unmodified	_DEVQKNMLD_					0	0	0		ENST00000562717.1_1_16:50188117-50258568:+|nuORF;nc|ENSG00000121274|Q8NDF8-4|TENT4B;nc|ENSG00000121274|Q8NDF8-2|TENT4B;nc|ENSG00000121274|Q8NDF8|TENT4B;nc|ENSG00000121274|Q8NDF8-3|TENT4B;nc|ENSG00000121274|Q8NDF8-5|TENT4B;ENSG00000121274|ENST00000561678|TENT4B	ENST00000562717.1_1_16:50188117-50258568:+|nuORF	ENST00000562717.1_1_16:50188117-50258568:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.25244140625	2	546.255514	1090.49647	-1.0578	-0.00057781	-2.4113	-0.0013172	-3.4691	-0.001895	546.2540824199572	120.78	3.5873	119.44	118.98	122.56	-1.3479					124	70	4	0	0	0	0.46356	1	11355	11355		45.972	8.1607	1	370910			3956	3475	3042	3052	5290	5290					-0.04515405258962346
DEVQKQLD	8	Unmodified	_DEVQKQLD_					0	0	0			REV__nc|ENSG00000126001|Q9BV73-2|CEP250	REV__nc|ENSG00000126001|Q9BV73-2|CEP250	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.7911071777344	2	487.743096	973.47164	-0.99718	-0.00048637	1.0949	0.00053403	0.097706	4.7655E-05	487.7436777299533	89.986	0.41216	87.905	87.644	88.056	-2.0805					11	7	2	0	0	0	0.028476	1	5576	5576		45.952	1.5748	1	16897	+		3957	18766	3043	3053	5291	5291					-0.016157170700353163
DEVVILEEIDI	11	Unmodified	_DEVVILEEIDI_					0	0	0			REV__tr|A0A7D6ZI17|A0A7D6ZI17_9CLOTDNAtopoisomerase(ATP-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=HZF06_05265PE=4SV=1	REV__tr|A0A7D6ZI17|A0A7D6ZI17_9CLOTDNAtopoisomerase(ATP-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=HZF06_05265PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	428.7147521972656	3	429.562381	1285.66531	1.5749	0.0006765	-2.1332	-0.00091636	-0.55838	-0.00023986	429.56142231080725	86.656	1.2921	84.03	83.762	85.055	-2.6269					67	25	4	0	0	0	0.025612	1	7317	7317		17.833	0	1	399700	+		3958	32044	3044	3054	5292	5292					0.03390774855552081
DEVVKIQSL	9	Unmodified	_DEVVKIQSL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	OvCa9_classI_Rep3	3	515.7926025390625	2	515.792589	1029.57063	1.8377	0.00094786	-2.2769	-0.0011744	-0.43924	-0.00022656	515.7912976606297	121.49	1.5717	120.46	120.17	121.74	-1.0286					56	29	3	0	0	0	0.26076	1	9302	9302		67.494	3.2864	1	182990			3959	4862	3045	3055	5293	5293					0.057023058948516336
DEVVLKFDR	9	Unmodified	_DEVVLKFDR_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3;ENST00000478082.5_1_7:100856177-100861250:-|nuORF	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-MSMS	OvCa9_classI_Rep3	3	560.8045043945312	2	560.803488	1119.59242	0.74763	0.00041927	-0.19889	-0.00011154	0.54874	0.00030773	560.8032406363295	113.08	1.9194	112.01	111.66	113.58	-1.0753					84	37	3	0	0	0	0.60342	1	8293	8293		31.53	1.0262	1	455470			3960	2548	3046	3056	5294	5294					0.03741110643431966
DEVVNKFLDD	10	Unmodified	_DEVVNKFLDD_					0	0	0		nc|ENSG00000112208|O95816-2|BAG2;ENSG00000112208|ENST00000370693|BAG2	nc|ENSG00000112208|O95816-2|BAG2	nc|ENSG00000112208|O95816-2|BAG2	MULTI-SECPEP	OvCa99_classI_Rep5	1	597.249755859375	2	597.287868	1192.56118	2.2706	0.0013562	2.2261	0.0013296	4.4967	0.0026858	597.2903143704925	95.712	0.17062	95.712	95.615	95.785	0					5	3	2	0	0	0	0.027056	1	10464	10464		14.865	0	1	129160			3961	2886	3047	3057	5295	5295					-0.027395071813316463
DEVVWVRAR	9	Unmodified	_DEVVWVRAR_					0	0	0		ENSG00000115866|ENST00000264161|DARS1;DARS-R3HDM1|1|fusion;ENST00000474184.1_1_2:136736721-136740991:-|nuORF	ENSG00000115866|ENST00000264161|DARS1	ENSG00000115866|ENST00000264161|DARS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.2908325195312	2	565.309272	1128.60399	2.4346	0.0013763	-2.0114	-0.0011371	0.42315	0.00023921	565.3080711719076	137.51	0.85738	137.51	137.16	138.02	0					54	18	5	0	0	0	0.027462	1	16049	16049		47.657	12.039	1	443130			3962	710	3048	3058	5296	5296					0.04483352457418732
DEWVHQPV	8	Unmodified	_DEWVHQPV_					0	0	0		ENSG00000103089|ENST00000219368|FA2H	ENSG00000103089|ENST00000219368|FA2H	ENSG00000103089|ENST00000219368|FA2H	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.244873046875	2	505.240524	1008.46649	-0.41131	-0.00020781	-0.44058	-0.0002226	-0.85188	-0.00043041	505.23992589248854	48.617	0.2629	48.617	48.455	48.718	0					10	5	2	0	0	0	0.028476	1	3575	3575		19.36	3.7182	1	53094			3963	2281	3049	3059	5297	5297					-0.03739976142003343
DEYDILVFDA	10	Unmodified	_DEYDILVFDA_					0	0	0		ENSG00000134516|ENST00000520908|DOCK2	ENSG00000134516|ENST00000520908|DOCK2	ENSG00000134516|ENST00000520908|DOCK2	MULTI-MSMS	OvCa9_classI_Rep3	3	600.2716674804688	2	600.276969	1198.53938	-4.8728	-0.002925	-3.2994	-0.0019806	-8.1722	-0.0049056	600.2748840186918	159.86	2.843	158.53	158.01	160.85	-1.3316					169	56	5	0	0	0	0.65434	1	13852	13852		35.618	2.8059	1	277240			3964	4305	3050	3060	5298	5298					-0.051943119298812235
DEYDLGGLITI	11	Unmodified	_DEYDLGGLITI_					0	0	0			REV__nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	REV__nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	MULTI-SECPEP	OvCa99_classI_Rep5	1	604.2683715820312	2	604.805894	1207.59723	-0.31349	-0.0001896	1.865	0.001128	1.5515	0.00093835	604.807490397918	67.894	0.74868	67.894	67.566	68.315	0					26	18	2	0	0	0	0.025806	1	6408	6408		24.519	0	1	276250	+		3965	23574	3051	3061	5299	5299					0.0017394999554198876
DEYEIGMKAL	10	Unmodified	_DEYEIGMKAL_					0	0	0		tr|A0A553SRN4|A0A553SRN4_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01480PE=4SV=1	tr|A0A553SRN4|A0A553SRN4_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01480PE=4SV=1	tr|A0A553SRN4|A0A553SRN4_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01480PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.3136596679688	2	584.781364	1167.54818	0.84591	0.00049467	-2.3653	-0.0013832	-1.5194	-0.0008885	584.7800478836125	131.46	0.70088	131.46	131.2	131.9	0					21	14	2	0	0	0	0.02676	1	15233	15233		41.427	13.544	1	228170			3966	34281	3052	3062	5300	5300					-0.028896615650637614
DEYEKLQVL	9	Unmodified	_DEYEKLQVL_					0	0	0		DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.F3496Wfs*92|1|0.14|ENSG00000197102|chr14:102034043-102034044|-/GACCTGGCAGCTGTCGAGGC|frameshift_variant;DYNC1H1|p.P2596Tfs*19|1|0.06|ENSG00000197102|chr14:102016936-102016937|-/A|frameshift_variant;DYNC1H1|p.E1316*|1|0.12|ENSG00000197102|chr14:102000128-102000129|-/C|frameshift_variant;DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	568.7948608398438	2	568.795329	1135.5761	-1.4092	-0.00080155	0.9119	0.00051868	-0.4973	-0.00028286	568.7956975700428	100.58	1.8837	99.753	99.212	101.1	-0.83052					109	37	4	0	0	0	0.040625	4	9195	9183;9195;9208;9233		126.24	16.764	1	589360			3967	767;768	3053	3063	5301;5302;5303;5304	5302					0.01373984686665608
DEYFAGGLHS	10	Unmodified	_DEYFAGGLHS_					0	0	0		nc|ENSG00000147316|Q8NEM0-3|MCPH1;MCPH1|p.S607Mfs*14|1|0.1|ENSG00000147316|chr8:6445542-6445542|G/-|frameshift_variant;ENSG00000147316|ENST00000344683|MCPH1;nc|ENSG00000147316|Q8NEM0-2|MCPH1	nc|ENSG00000147316|Q8NEM0-3|MCPH1	nc|ENSG00000147316|Q8NEM0-3|MCPH1	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.3213500976562	2	548.240721	1094.46689	1.0507	0.00057606	-2.4321	-0.0013334	-1.3813	-0.00075729	548.2388954187103	79.113	0.20325	79.113	79.037	79.24	0					6	4	2	0	0	0	0.026994	1	8048	8048		25.574	12.615	1	128640			3968	5349	3054	3064	5305	5305					-0.07656601212784153
DEYIMAIEQTI	11	Unmodified	_DEYIMAIEQTI_					0	0	0		ENSG00000125730|ENST00000245907|C3;ENST00000599668.1_1_19:6677895-6679444:-|nuORF;ENST00000599899.5_1_19:6677895-6682275:-|nuORF	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-SECPEP	OvCa9_classI_Rep2	2	441.787109375	3	442.547966	1324.62207	2.1256	0.0009407	-2.8076	-0.0012425	-0.68194	-0.00030179	442.54655229209084	65.084	1.0196	62.36	62.023	63.043	-2.7246					34	19	2	0	0	0	0.025378	1	5011	5011		36.318	18.485	1	37795			3969	3725	3055	3065	5306	5306					-0.027257381934077785
DEYSGNRLF	9	Unmodified	_DEYSGNRLF_					0	0	0			REV__nc|ENSG00000144452|Q86UK0-2|ABCA12	REV__nc|ENSG00000144452|Q86UK0-2|ABCA12	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.8213500976562	2	550.753995	1099.49344	2.2015	0.0012125	-1.4544	-0.00080104	0.74704	0.00041144	550.7527444716947	76.119	0.36694	76.119	75.913	76.28	0					13	8	2	0	0	0	0.027462	1	7618	7618		38.806	13.232	1	313080	+		3970	19912	3056	3066	5307	5307					-0.052329123214803985
DEYSLVREL	9	Unmodified	_DEYSLVREL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.D1277Afs*54|1|0.12|ENSG00000137076|chr9:35711644-35711645|-/G|frameshift_variant;ENST00000378192.2_1_9:35723947-35725691:-|nuORF	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OvCa9_classI_Rep2	2	562.2862548828125	2	562.285128	1122.5557	0.67856	0.00038154	-0.536	-0.00030138	0.14256	8.0158E-05	562.2847536437868	111.27	1.3799	111.14	110.78	112.16	-0.13961					70	27	4	0	0	0	0.07097	1	10501	10501		106.68	34.806	1	245680			3971	4552	3057	3067	5308	5308					-0.0006718597312556085
DEYSLVREL	9	Unmodified	_DEYSLVREL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.D1277Afs*54|1|0.12|ENSG00000137076|chr9:35711644-35711645|-/G|frameshift_variant;ENST00000378192.2_1_9:35723947-35725691:-|nuORF	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OvCa9_classI_Rep3	3	562.284423828125	2	562.285128	1122.5557	1.4915	0.00083866	-1.4082	-0.0007918	0.083338	4.686E-05	562.2842646617366	111.99	1.3316	110.89	110.55	111.88	-1.1038					69	26	4	0	0	0	0.066102	2	8156	8156;8160		109.48	37.164	1	318210			3972	4552	3057	3067	5309;5310	5309					-0.0006718597312556085
DEYSLVREL	9	Unmodified	_DEYSLVREL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.D1277Afs*54|1|0.12|ENSG00000137076|chr9:35711644-35711645|-/G|frameshift_variant;ENST00000378192.2_1_9:35723947-35725691:-|nuORF	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.2845458984375	2	562.285128	1122.5557	1.5289	0.0008597	-1.6778	-0.0009434	-0.14886	-8.3702E-05	562.2841280148509	112.42	1.6143	110.9	110.42	112.04	-1.5111					84	31	5	0	0	0	0.027568	2	10391	10377;10391		138.06	66.185	1	344000			3973	4552	3057	3067	5311;5312	5312					-0.0006718597312556085
DFAEDDEDH	9	Unmodified	_DFAEDDEDH_					0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	MSMS	OvCa99_classI_Rep5	1	546.6922607421875	2	546.691258	1091.36796	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.768	1	20.768	20.268	21.268	0								0	0	0	0.25578	1	52	52		17.365	1.7232	1		+		3974	22589	3058	3068	5313	5313					-0.17406668968396843
DFAGGISF	8	Unmodified	_DFAGGISF_					0	0	0		ENST00000565978.1_1_18:29265619-29265784:+|nuORF	ENST00000565978.1_1_18:29265619-29265784:+|nuORF	ENST00000565978.1_1_18:29265619-29265784:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	407.1933898925781	2	407.192511	812.370469	2.5593	0.0010421	0.16744	6.8182E-05	2.7268	0.0011103	407.19245363190157	90.866	1.4905	90.866	90.346	91.837	0					82	36	3	0	0	0	0.47599	2	9732	9732;9792		79.939	5.4226	1	2546100			3975	13834	3059	3069	5314;5315	5314					-0.043221239820923074
DFAIRSSI	8	Unmodified	_DFAIRSSI_					0	0	0			REV__tr|A0A7D6VY80|A0A7D6VY80_9CLOTGlycosyltransferasegroup1OS=ClostridiumintestinaleOX=36845GN=HZF06_14740PE=4SV=1	REV__tr|A0A7D6VY80|A0A7D6VY80_9CLOTGlycosyltransferasegroup1OS=ClostridiumintestinaleOX=36845GN=HZF06_14740PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	454.7462158203125	2	454.745442	907.476331	0.39322	0.00017881	-0.90334	-0.00041079	-0.51012	-0.00023198	454.74491066172334	74.996	1.3076	71.765	71.385	72.693	-3.2308					62	26	4	0	0	0	0.62934	1	5903	5903		57.811	0	1	343310	+		3976	31813	3060	3070	5316	5316					0.01889211863363016
DFAVIEGTPT	10	Unmodified	_DFAVIEGTPT_					0	0	0			REV__ENSG00000081800|ENST00000194130|SLC13A1	REV__ENSG00000081800|ENST00000194130|SLC13A1	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.7844848632812	2	525.261122	1048.50769	-1.309	-0.00068754	0.20492	0.00010763	-1.104	-0.00057991	525.7634894954867	101.88	0.52585	100.36	100.11	100.63	-1.5211					12	9	2	0	0	0	0.026688	1	6988	6988		49.442	12.282	1	17392	+		3977	17075	3061	3071	5317	5317					-0.014622598931964603
DFCLRRDF	8	Unmodified	_DFCLRRDF_					0	0	0		nc|ENSG00000143258|Q9UK80-3|USP21;ENSG00000143258|ENST00000368002|USP21;ENST00000487163.5_1_1:161131815-161133927:+|nuORF;nc|ENSG00000143258|Q9UK80-2|USP21	nc|ENSG00000143258|Q9UK80-3|USP21	nc|ENSG00000143258|Q9UK80-3|USP21	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.7977905273438	2	536.255651	1070.49675	2.8804	0.0015447	2.9097	0.0015603	5.7901	0.003105	536.257093396351	100.84	0.37622	100.84	100.73	101.11	0					13	8	2	0	0	0	0.028476	1	11216	11216		38.806	13.232	1	185440			3978	5026	3062	3072	5318	5318					-0.035679407484849435
DFCLRRDF	8	Unmodified	_DFCLRRDF_					0	0	0		nc|ENSG00000143258|Q9UK80-3|USP21;ENSG00000143258|ENST00000368002|USP21;ENST00000487163.5_1_1:161131815-161133927:+|nuORF;nc|ENSG00000143258|Q9UK80-2|USP21	nc|ENSG00000143258|Q9UK80-3|USP21	nc|ENSG00000143258|Q9UK80-3|USP21	MULTI-MATCH	OvCa9_classI_Rep2	2		2	536.255651	1070.49675	-2.0359	-0.0010917	5.3559	0.0028721	3.32	0.0017804	536.2596764770811	101.55	0.74335	100.79	100.57	101.31	-0.76401	0.0057399	-0.00030108	NaN	47.916	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41124			3979	5026	3062	3072							-0.035679407484849435
DFCLRRDF	8	Unmodified	_DFCLRRDF_					0	0	0		nc|ENSG00000143258|Q9UK80-3|USP21;ENSG00000143258|ENST00000368002|USP21;ENST00000487163.5_1_1:161131815-161133927:+|nuORF;nc|ENSG00000143258|Q9UK80-2|USP21	nc|ENSG00000143258|Q9UK80-3|USP21	nc|ENSG00000143258|Q9UK80-3|USP21	MULTI-MATCH	OvCa9_classI_Rep3	3		2	536.255651	1070.49675	0.50471	0.00027065	5.2941	0.002839	5.7988	0.0031097	536.2586349417128	102.3	0.93707	100.78	100.42	101.36	-1.5211	-0.0014803	-0.00036732	NaN	47.916	26	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42352			3980	5026	3062	3072							-0.035679407484849435
DFCLRRDF	8	Unmodified	_DFCLRRDF_					0	0	0		nc|ENSG00000143258|Q9UK80-3|USP21;ENSG00000143258|ENST00000368002|USP21;ENST00000487163.5_1_1:161131815-161133927:+|nuORF;nc|ENSG00000143258|Q9UK80-2|USP21	nc|ENSG00000143258|Q9UK80-3|USP21	nc|ENSG00000143258|Q9UK80-3|USP21	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	536.255651	1070.49675	-1.0672	-0.00057229	7.224	0.0038739	6.1568	0.0033016	536.2593225933355	102.92	0.73109	100.72	100.52	101.25	-2.1994	-0.061065	0.0017025	NaN	47.916	22	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41196			3981	5026	3062	3072							-0.035679407484849435
DFCRKLLF	8	Unmodified	_DFCRKLLF_					0	0	0		ENST00000497784.1_2_7:140434399-140508041:-|nuORF;ENSG00000157764|ENST00000646891|BRAF	ENST00000497784.1_2_7:140434399-140508041:-|nuORF	ENST00000497784.1_2_7:140434399-140508041:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.8175659179688	2	521.281137	1040.54772	1.1458	0.00059728	1.342	0.00069958	2.4878	0.0012969	521.2816119192239	116.91	0.44901	116.91	116.68	117.13	0					16	9	2	0	0	0	0.028476	1	13391	13391		44.531	14.69	1	177680			3982	5909	3063	3073	5319	5319					0.02907008296369895
DFDTFNLLV	9	Unmodified	_DFDTFNLLV_					0	0	0			REV__CUBN|p.N2467Tfs*26|1|0.51|ENSG00000107611|chr10:16913949-16913949|A/-|frameshift_variant	REV__CUBN|p.N2467Tfs*26|1|0.51|ENSG00000107611|chr10:16913949-16913949|A/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.811767578125	2	542.27149	1082.52843	1.0802	0.00058574	-0.71491	-0.00038768	0.36525	0.00019806	542.271096174425	155.83	0.45981	155.83	155.58	156.04	0					13	8	2	0	0	0	0.027462	1	18280	18280		30.504	13.139	1	33127	+		3983	16257	3064	3074	5320	5320					-0.009536695135238915
DFEEIRANN	9	Unmodified	_DFEEIRANN_					0	0	0			REV__tr|A0A7D6VXR0|A0A7D6VXR0_9CLOTSerine/threonineproteinphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_12940PE=4SV=1	REV__tr|A0A7D6VXR0|A0A7D6VXR0_9CLOTSerine/threonineproteinphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_12940PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.271484375	2	554.256902	1106.49925	2.0297	0.001125	1.7291	0.00095839	3.7589	0.0020834	554.257554789466	137.75	0.61653	137.75	137.5	138.11	0					27	13	3	0	0	0	0.027453	1	16063	16063		54.776	21.964	1	104610	+		3984	31786	3065	3075	5321	5321					-0.049738138098064155
DFEESRSI	8	Unmodified	_DFEESRSI_					0	0	0			REV__nc|ENSG00000176601|Q56UN5-7|MAP3K19	REV__nc|ENSG00000176601|Q56UN5-7|MAP3K19	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.73095703125	2	491.727446	981.44034	-0.96762	-0.00047581	0.12973	6.3789E-05	-0.8379	-0.00041202	491.7274886693811	44.341	0.26809	44.341	44.26	44.528	0					7	5	2	0	0	0	0.028476	1	2990	2990		35.618	14.671	1	130940	+		3985	21957	3066	3076	5322	5322					-0.051122901041367186
DFEGHGVEV	9	Unmodified	_DFEGHGVEV_					0	0	0		ENSG00000176092|ENST00000308182|CRYBG2	ENSG00000176092|ENST00000308182|CRYBG2	ENSG00000176092|ENST00000308182|CRYBG2	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.76953125	2	494.722164	987.429775	2.0353	0.0010069	4.4104	0.0021819	6.4457	0.0031888	494.7242382407418	100.46	0.45531	100.46	100.19	100.65	0					16	10	2	0	0	0	0.027462	1	11119	11119		29.15	0	1	507770			3986	7581	3067	3077	5323	5323					-0.06444272758551506
DFERAGWGRW	10	Unmodified	_DFERAGWGRW_					0	0	0			REV__ENSG00000154237|ENST00000388948|LRRK1	REV__ENSG00000154237|ENST00000388948|LRRK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	640.3563232421875	2	640.301978	1278.5894	0.09106	5.8306E-05	-0.16947	-0.00010851	-0.078415	-5.0209E-05	640.8026899910377	47.288	0.21425	47.288	47.165	47.379	0					7	4	2	0	0	0	0.026915	1	3407	3407		35.618	5.3006	1	36635	+		3987	20369	3068	3078	5324	5324					-0.038747196907252146
DFESKFTF	8	Unmodified	_DFESKFTF_					0	0	0		ENSG00000122574|ENST00000242140|WIPF3	ENSG00000122574|ENST00000242140|WIPF3	ENSG00000122574|ENST00000242140|WIPF3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.2988586425781	2	510.737283	1019.46001	-0.51553	-0.0002633	-3.6014	-0.0018394	-4.117	-0.0021027	511.2359855323375	101.77	0.25629	99.507	99.404	99.66	-2.2665					5	4	2	0	0	0	0.028476	1	9141	9141		55.504	21.989	1	9974.6			3988	3542	3069	3079	5325	5325					-0.048939140933725866
DFFAYIIF	8	Unmodified	_DFFAYIIF_					0	0	0		ENST00000486047.5_1_9:4605401-4627755:-|nuORF	ENST00000486047.5_1_9:4605401-4627755:-|nuORF	ENST00000486047.5_1_9:4605401-4627755:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.2621459960938	2	518.262936	1034.51132	1.7084	0.00088539	-2.5407	-0.0013167	-0.83229	-0.00043135	518.2614038006194	129.85	2.8637	128.39	126.95	129.81	-1.4565					113	57	4	0	0	0	0.59103	1	12437	12437		65.897	0.094285	1	556110			3989	12618	3070	3080	5326	5326					-0.00455545328691187
DFFFILVLIT	10	Unmodified	_DFFFILVLIT_					0	0	0			REV__tr|A0A7D6VP63|A0A7D6VP63_9CLOTMetalABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17520PE=3SV=1	REV__tr|A0A7D6VP63|A0A7D6VP63_9CLOTMetalABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17520PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	613.3577270507812	2	614.354825	1226.6951	0.79638	0.00048926	-0.46172	-0.00028366	0.33466	0.0002056	614.3545078762484	152.13	0.74217	152.13	151.83	152.57	0					29	16	2	0	0	0	0.027089	1	17867	17867		14.137	0	1	169630	+		3990	31231	3071	3081	5327	5327					0.09081803382196085
DFFGAYTMDV	10	Unmodified	_DFFGAYTMDV_					0	0	0		nc|ENSG00000021461|Q9HB55-4|CYP3A43;CYP3A43|p.V394Sfs*4|1|0.05|ENSG00000021461|chr7:99861764-99861765|-/CTCTGCTG|frameshift_variant;CYP3A43|p.V394Yfs*7|1|0.04|ENSG00000021461|chr7:99861765-99861766|-/TATTGGCTGGACTCGCT|frameshift_variant;nc|ENSG00000021461|Q9HB55-3|CYP3A43;ENSG00000021461|ENST00000354829|CYP3A43;nc|ENSG00000021461|Q9HB55-2|CYP3A43	nc|ENSG00000021461|Q9HB55-4|CYP3A43	nc|ENSG00000021461|Q9HB55-4|CYP3A43	MULTI-MSMS	OvCa9_classI_Rep2	2	583.2481079101562	2	583.247157	1164.47976	0.67489	0.00039363	2.3521	0.0013718	3.027	0.0017655	583.2484035489165	130.41	1.8783	130.18	129.81	131.69	-0.22696					86	37	3	0	0	0	0.6104	1	12901	12901		40.778	0	1	516500			3991	702	3072	3082	5328	5328					-0.09589906144924498
DFFGVISADK	10	Unmodified	_DFFGVISADK_					0	0	0			REV__ENST00000471856.1_1_1:146649692-146651075:+|nuORF	REV__ENST00000471856.1_1_1:146649692-146651075:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.8333740234375	2	549.776939	1097.53933	-1.4681	-0.00080715	-2.7693	-0.0015225	-4.2375	-0.0023297	549.7753462110923	72.753	1.0166	69.357	69.107	70.124	-3.3961					37	20	2	0	0	0	0.026867	1	5668	5668		42.864	9.3487	1	306460	+		3992	21246	3073	3083	5329	5329					-0.005542671392504417
DFFPLFSTPT	10	Unmodified	_DFFPLFSTPT_					0	0	0			REV__ENST00000475010.5_1_7:140155450-140179030:-|nuORF	REV__ENST00000475010.5_1_7:140155450-140179030:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	586.2855834960938	2	586.28714	1170.55973	1.7776	0.0010422	-4.4216	-0.0025923	-2.644	-0.0015501	586.2846403437609	91.392	1.1917	91.392	90.816	92.008	0					48	28	4	0	0	0	0.46756	1	9841	9841		58.782	7.2542	1	3565800	+		3993	26351	3074	3084	5330	5330					-0.018730964794258398
DFGHKLPHF	9	Unmodified	_DFGHKLPHF_					0	0	0			REV__ENSG00000141012|ENST00000268695|GALNS	REV__ENSG00000141012|ENST00000268695|GALNS	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.2815551757812	2	549.279983	1096.54541	-0.17202	-9.4487E-05	-0.28041	-0.00015402	-0.45243	-0.00024851	549.2799073978539	142.79	1.058	141.35	141.04	142.1	-1.4427					32	20	2	0	0	0	0.50066	1	13974	13974		42.474	10.52	1	27886	+		3994	19716	3075	3085	5331	5331					0.0010029588293036795
DFGHKLPHF	9	Unmodified	_DFGHKLPHF_					0	0	0			REV__ENSG00000141012|ENST00000268695|GALNS	REV__ENSG00000141012|ENST00000268695|GALNS	MULTI-MATCH	OvCa9_classI_Rep2	2		2	549.279983	1096.54541	-1.1246	-0.00061774	0.20594	0.00011312	-0.9187	-0.00050462	549.2799327670347	141.75	0.93924	141.53	141.27	142.21	-0.22696	0.10759	-0.00047077	NaN	42.474	33	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28705	+		3995	19716	3075	3085							0.0010029588293036795
DFGHKLPHF	9	Unmodified	_DFGHKLPHF_					0	0	0			REV__ENSG00000141012|ENST00000268695|GALNS	REV__ENSG00000141012|ENST00000268695|GALNS	MULTI-MATCH	OvCa9_classI_Rep3	3		2	549.279983	1096.54541	-3.0302	-0.0016644	1.7207	0.00094516	-1.3095	-0.00071928	549.2808040434202	142.39	0.84109	141.38	141.08	141.92	-1.0106	-0.035843	0.0011933	NaN	42.474	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34076	+		3996	19716	3075	3085							0.0010029588293036795
DFGHKLPHF	9	Unmodified	_DFGHKLPHF_					0	0	0			REV__ENSG00000141012|ENST00000268695|GALNS	REV__ENSG00000141012|ENST00000268695|GALNS	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	549.279983	1096.54541	-0.17202	-9.4487E-05	-0.28041	-0.00015402	-0.45243	-0.00024851	549.2799073978539	142.79	1.058	141.35	141.04	142.1	-1.4427	-0.071749	-0.0010051	NaN	42.474	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27886	+		3997	19716	3075	3085							0.0010029588293036795
DFGRLNVKL	9	Unmodified	_DFGRLNVKL_					0	0	0		nc|ENSG00000165929|Q8N9U0-2|TC2N;ENSG00000165929|ENST00000435962|TC2N	nc|ENSG00000165929|Q8N9U0-2|TC2N	nc|ENSG00000165929|Q8N9U0-2|TC2N	MULTI-MSMS	OvCa99_classI_Rep5	1	531.3095092773438	2	531.308741	1060.60293	2.3957	0.0012728	-0.35587	-0.00018908	2.0398	0.0010838	531.3086384919052	93.943	1.4885	93.943	93.673	95.161	0					83	34	4	0	0	0	0.03923	1	10204	10204		127.46	14.05	1	40485000			3998	6615	3076	3086	5332	5332					0.07505138088504282
DFGRTGRQR	9	Unmodified	_DFGRTGRQR_					0	0	0		ENST00000543538.5_1_4:40859041-40859125:-|nuORF	ENST00000543538.5_1_4:40859041-40859125:-|nuORF	ENST00000543538.5_1_4:40859041-40859125:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.7855224609375	2	546.786496	1091.55844	-1.2902	-0.00070546	0.35244	0.00019271	-0.93775	-0.00051275	546.7866680087051	41.972	1.7543	38.992	38.388	40.142	-2.9804					103	30	5	0	0	0	0.5811	1	1922	1922		34.173	3.6689	1	751890			3999	13495	3077	3087	5333	5333					0.016321269950367423
DFGSSCRQLK	10	Unmodified	_DFGSSCRQLK_					0	0	0			REV__ENST00000377238.2_1_10:20332341-20568745:+|nuORF	REV__ENST00000377238.2_1_10:20332341-20568745:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	570.77783203125	2	570.776948	1139.53934	-0.26126	-0.00014912	-1.1675	-0.00066638	-1.4288	-0.0008155	570.7761550425406	62.016	0.67032	62.016	61.665	62.335	0					39	15	4	0	0	0	0.3094	1	5496	5496		79.713	0	1	2320700	+		4000	18504	3078	3088	5334	5334					-0.02484590410904275
DFGSSCRQLK	10	Unmodified	_DFGSSCRQLK_					0	0	0			REV__ENST00000377238.2_1_10:20332341-20568745:+|nuORF	REV__ENST00000377238.2_1_10:20332341-20568745:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	570.776948	1139.53934	-0.26126	-0.00014912	-1.1675	-0.00066638	-1.4288	-0.0008155	570.7761550425406	62.016	0.67032	62.016	61.665	62.335	0	0	0	NaN	79.713	39	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2320700	+		4001	18504	3078	3088							-0.02484590410904275
DFHAIQLSH	9	Unmodified	_DFHAIQLSH_					0	0	0			REV__nc|ENSG00000196730|P53355-4|DAPK1	REV__nc|ENSG00000196730|P53355-4|DAPK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.7842407226562	2	534.267073	1066.51959	2.6038	0.0013911	0.87437	0.00046715	3.4782	0.0018583	534.7688384782227	75.402	0.39547	75.402	75.168	75.563	0					14	9	3	0	0	0	0.027418	1	7494	7494		49.442	0	1	148730	+		4002	22860	3079	3089	5335	5335					-0.01100598359334981
DFIHIVGMG	9	Unmodified	_DFIHIVGMG_					0	0	0		ENSG00000135298|ENST00000370598|ADGRB3	ENSG00000135298|ENST00000370598|ADGRB3	ENSG00000135298|ENST00000370598|ADGRB3	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.76953125	2	494.74967	987.484787	1.91	0.00094495	2.7743	0.0013726	4.6843	0.0023175	494.7510138879941	100.17	0.4637	100.17	99.939	100.4	0					16	10	2	0	0	0	0.027449	1	11119	11119		31.955	11.958	1	347410			4003	4361	3080	3090	5336	5336					-0.00945557491627369
DFIKEYNKF	9	Unmodified	_DFIKEYNKF_					0	0	0		tr|A0A7D6ZG52|A0A7D6ZG52_9CLOTRecombinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20890PE=4SV=1	tr|A0A7D6ZG52|A0A7D6ZG52_9CLOTRecombinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20890PE=4SV=1	tr|A0A7D6ZG52|A0A7D6ZG52_9CLOTRecombinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20890PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	602.3068237304688	2	602.305864	1202.59717	1.4399	0.00086724	0.98987	0.00059621	2.4297	0.0014635	602.3063266509963	144.57	1.5681	144.57	144.21	145.78	0					66	32	3	0	0	0	0.33652	1	16919	16919		58.782	0.55203	1	474280			4004	35535	3081	3091	5337	5337					0.003979947861580513
DFILNIFY	8	Unmodified	_DFILNIFY_					0	0	0			REV__L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|308|2|anti-sense	REV__L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|308|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.8178100585938	2	522.773668	1043.53278	-0.59264	-0.00030982	-3.3859	-0.0017701	-3.9785	-0.0020799	522.7718201179573	115.81	0.73985	114.77	114.45	115.19	-1.0414					20	14	2	0	0	0	0.028476	1	8602	8602		25.45	3.7478	1	14032	+		4005	28534	3082	3092	5338	5338					0.012758397000425248
DFINSHGKVK	10	Unmodified	_DFINSHGKVK_					0	0	0		CPA2|p.K294N|1|0.15|ENSG00000158516|chr7:130279557-130279557|G/T|missense_variant	CPA2|p.K294N|1|0.15|ENSG00000158516|chr7:130279557-130279557|G/T|missense_variant	CPA2|p.K294N|1|0.15|ENSG00000158516|chr7:130279557-130279557|G/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	572.2537841796875	2	572.809105	1143.60366	0.0036379	2.0838E-06	0.79621	0.00045608	0.79985	0.00045816	572.8095144810192	83.93	0.81507	81.268	80.779	81.594	-2.6629					35	16	3	0	0	0	0.026681	1	6952	6952		29.17	0	1	90932			4006	673	3083	3093	5339	5339					0.03759932737557392
DFIPFTKK	8	Unmodified	_DFIPFTKK_					0	0	0		nc|ENSG00000119703|Q53FD0-2|ZC2HC1C;ENSG00000119703|ENST00000524913|ZC2HC1C	nc|ENSG00000119703|Q53FD0-2|ZC2HC1C	nc|ENSG00000119703|Q53FD0-2|ZC2HC1C	MULTI-MSMS	OvCa9_classI_Rep2	2	498.281005859375	2	498.28166	994.548768	0.43376	0.00021614	-0.53163	-0.0002649	-0.097869	-4.8766E-05	498.28127650436284	131.63	1.4224	131.41	131	132.42	-0.22697					82	28	4	0	0	0	0.50747	1	12970	12970		76.774	13.796	1	388250			4007	3386	3084	3094	5340	5340					0.05127545936932165
DFIPFTKK	8	Unmodified	_DFIPFTKK_					0	0	0		nc|ENSG00000119703|Q53FD0-2|ZC2HC1C;ENSG00000119703|ENST00000524913|ZC2HC1C	nc|ENSG00000119703|Q53FD0-2|ZC2HC1C	nc|ENSG00000119703|Q53FD0-2|ZC2HC1C	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.28143310546875	2	498.28166	994.548768	3.4548	0.0017215	-3.7364	-0.0018618	-0.28161	-0.00014032	498.27969539761534	133.03	1.2718	131.52	131.13	132.4	-1.5114					73	25	4	0	0	0	0.40148	1	12828	12828		87.754	19.27	1	540930			4008	3386	3084	3094	5341	5341					0.05127545936932165
DFIRRNQSDI	10	Unmodified	_DFIRRNQSDI_					0	0	0			REV__tr|A0A7D6VYM8|A0A7D6VYM8_9CLOTCation-transportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16575PE=4SV=1	REV__tr|A0A7D6VYM8|A0A7D6VYM8_9CLOTCation-transportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16575PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	422.748779296875	3	421.886192	1262.63675	-0.37654	-0.00015886	2.878	0.0012142	2.5015	0.0010553	421.8872838949862	78.954	0.75806	76.203	75.945	76.703	-2.7514					31	15	3	0	0	0	0.027174	1	6436	6436		20.03	4.693	1	80555	+		4009	31822	3085	3095	5342	5342					0.015935147896016133
DFIRRNQSDI	10	Unmodified	_DFIRRNQSDI_					0	0	0			REV__tr|A0A7D6VYM8|A0A7D6VYM8_9CLOTCation-transportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16575PE=4SV=1	REV__tr|A0A7D6VYM8|A0A7D6VYM8_9CLOTCation-transportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16575PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	421.886192	1262.63675	-0.013961	-5.8897E-06	3.7684	0.0015899	3.7545	0.001584	421.8876219220224	77.94	1.2414	76.151	75.468	76.709	-1.7894	-0.10272	0.00085364	NaN	14.694	47	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49692	+		4010	31822	3085	3095							0.015935147896016133
DFIRRNQSDI	10	Unmodified	_DFIRRNQSDI_					0	0	0			REV__tr|A0A7D6VYM8|A0A7D6VYM8_9CLOTCation-transportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16575PE=4SV=1	REV__tr|A0A7D6VYM8|A0A7D6VYM8_9CLOTCation-transportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16575PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		3	421.886192	1262.63675	0.45405	0.00019156	3.1902	0.0013459	3.6443	0.0015375	421.88756192264265	78.76	1.191	76.407	75.698	76.889	-2.3527	0.15359	0.00012179	NaN	14.694	51	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58822	+		4011	31822	3085	3095							0.015935147896016133
DFISHLTNQ	9	Unmodified	_DFISHLTNQ_					0	0	0		chr12:21234299-21292164|122|10.14|0.05|7.6|-|1|TE_info:LTR8,LTR8_dup2354,ERV1,LTR,acceptor,-,21233930,21234299|None,SLCO1A2|4	chr12:21234299-21292164|122|10.14|0.05|7.6|-|1|TE_info:LTR8,LTR8_dup2354,ERV1,LTR,acceptor,-,21233930,21234299|None,SLCO1A2|4	chr12:21234299-21292164|122|10.14|0.05|7.6|-|1|TE_info:LTR8,LTR8_dup2354,ERV1,LTR,acceptor,-,21233930,21234299|None,SLCO1A2|4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.807373046875	2	537.764363	1073.51417	-0.8266	-0.00044452	1.0429	0.00056084	0.21631	0.00011633	537.764333112966	98.559	0.66532	96.181	95.921	96.586	-2.3786					36	12	4	0	0	0	0.027425	1	8788	8788		69.628	13.194	1	49875			4012	311	3086	3096	5343	5343					-0.019643219418412627
DFISHLTNQ	9	Unmodified	_DFISHLTNQ_					0	0	0		chr12:21234299-21292164|122|10.14|0.05|7.6|-|1|TE_info:LTR8,LTR8_dup2354,ERV1,LTR,acceptor,-,21233930,21234299|None,SLCO1A2|4	chr12:21234299-21292164|122|10.14|0.05|7.6|-|1|TE_info:LTR8,LTR8_dup2354,ERV1,LTR,acceptor,-,21233930,21234299|None,SLCO1A2|4	chr12:21234299-21292164|122|10.14|0.05|7.6|-|1|TE_info:LTR8,LTR8_dup2354,ERV1,LTR,acceptor,-,21233930,21234299|None,SLCO1A2|4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	537.764363	1073.51417	-0.66894	-0.00035973	0.3112	0.00016735	-0.35773	-0.00019238	537.7642327377272	97.167	0.5925	96.208	95.97	96.562	-0.95857	-0.0035536	0.00037209	NaN	69.628	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49844			4013	311	3086	3096							-0.019643219418412627
DFITVDRLWNI	11	Unmodified	_DFITVDRLWNI_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-MSMS	OvCa99_classI_Rep5	1	464.5802001953125	3	464.58211	1390.7245	0.036731	1.7065E-05	-0.48457	-0.00022512	-0.44783	-0.00020806	464.58189071338114	21.901	0.2494	21.901	21.797	22.047	0					11	8	2	0	0	0	0.72516	1	161	161		13.508	1.3013	1	14392	+		4014	17073	3087	3097	5344	5344					0.04476715660393893
DFIVGKAITKR	11	Unmodified	_DFIVGKAITKR_					0	0	0		tr|A0A553SQ21|A0A553SQ21_NIACIcardiolipinsynthaseOS=NialliacirculansOX=1397GN=clsPE=4SV=1	tr|A0A553SQ21|A0A553SQ21_NIACIcardiolipinsynthaseOS=NialliacirculansOX=1397GN=clsPE=4SV=1	tr|A0A553SQ21|A0A553SQ21_NIACIcardiolipinsynthaseOS=NialliacirculansOX=1397GN=clsPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	624.3740844726562	2	624.377155	1246.73976	-6.4688	-0.004039	-2.9173	-0.0018215	-9.3861	-0.0058604	624.3749313698447	163.73	0.6391	162.09	161.79	162.43	-1.6336					37	17	3	0	0	0	0.71498	1	16154	16154		24.519	0	1	75169			4015	34108	3088	3098	5345	5345					0.1262562724818963
DFIYNDEE	8	Unmodified	_DFIYNDEE_					0	0	0		tr|A0A7D6ZV40|A0A7D6ZV40_9CLOTPF03932familyproteinCutCOS=ClostridiumintestinaleOX=36845GN=cutCPE=3SV=1	tr|A0A7D6ZV40|A0A7D6ZV40_9CLOTPF03932familyproteinCutCOS=ClostridiumintestinaleOX=36845GN=cutCPE=3SV=1	tr|A0A7D6ZV40|A0A7D6ZV40_9CLOTPF03932familyproteinCutCOS=ClostridiumintestinaleOX=36845GN=cutCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	522.7127075195312	2	522.711462	1043.40837	1.1996	0.00062702	2.4291	0.0012697	3.6287	0.0018967	522.712694236041	122.39	1.4646	121.37	121.01	122.47	-1.0286					69	27	4	0	0	0	0.67745	1	9408	9408		47.916	5.4411	1	244030			4016	35791	3089	3099	5346	5346					-0.11159702577947428
DFKKIEMLF	9	Unmodified	_DFKKIEMLF_					0	0	0		tr|A0A7D6ZUY1|A0A7D6ZUY1_9CLOTPLP-dependentaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12165PE=3SV=1	tr|A0A7D6ZUY1|A0A7D6ZUY1_9CLOTPLP-dependentaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12165PE=3SV=1	tr|A0A7D6ZUY1|A0A7D6ZUY1_9CLOTPLP-dependentaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12165PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	585.8150634765625	2	585.81501	1169.61547	0.73184	0.00042873	-2.4487	-0.0014345	-1.7168	-0.0010057	585.8136759324592	131.89	2.4742	131.89	131.15	133.63	0					227	52	6	0	0	0	0.16562	1	15446	15446		82.241	2.7895	1	37991000			4017	35785	3090	3100	5347	5347					0.03744413436538707
DFKKVLDL	8	Unmodified	_DFKKVLDL_					0	0	0		ENSG00000183891|ENST00000333610|TTC32	ENSG00000183891|ENST00000333610|TTC32	ENSG00000183891|ENST00000333610|TTC32	MULTI-SECPEP	OvCa9_classI_Rep4_	4	489.7393798828125	2	489.286943	976.559333	-0.91417	-0.00044729	0.66552	0.00032563	-0.24865	-0.00012166	489.28709586165195	118.37	0.99709	117.02	116.79	117.78	-1.3444					23	18	2	0	0	0	0.028476	1	11129	11129		17.365	3.5896	1	27638			4018	8121	3091	3101	5348	5348					0.07011528591374372
DFKKVLDL	8	Unmodified	_DFKKVLDL_					0	0	0		ENSG00000183891|ENST00000333610|TTC32	ENSG00000183891|ENST00000333610|TTC32	ENSG00000183891|ENST00000333610|TTC32	MULTI-MATCH	OvCa9_classI_Rep3	3		2	489.286943	976.559333	-0.74642	-0.00036521	0.63695	0.00031165	-0.10947	-5.3564E-05	489.28712125058433	118.13	0.74372	117.09	116.84	117.58	-1.0324	0.034989	-1.0284E-05	NaN	17.365	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28314			4019	8121	3091	3101							0.07011528591374372
DFKLINKE	8	Unmodified	_DFKLINKE_					0	0	0		tr|A0A7D6ZRF3|A0A7D6ZRF3_9CLOTBeta-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03595PE=3SV=1	tr|A0A7D6ZRF3|A0A7D6ZRF3_9CLOTBeta-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03595PE=3SV=1	tr|A0A7D6ZRF3|A0A7D6ZRF3_9CLOTBeta-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03595PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.7464904785156	2	503.782025	1005.5495	-0.47473	-0.00023916	0.77805	0.00039197	0.30333	0.00015281	503.78206805239444	52.236	0.65327	52.236	51.912	52.566	0					31	14	3	0	0	0	0.028476	1	4094	4094		58.23	6.8945	1	716520			4020	35714	3092	3102	5349	5349					0.046943405859906306
DFKLINKE	8	Unmodified	_DFKLINKE_					0	0	0		tr|A0A7D6ZRF3|A0A7D6ZRF3_9CLOTBeta-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03595PE=3SV=1	tr|A0A7D6ZRF3|A0A7D6ZRF3_9CLOTBeta-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03595PE=3SV=1	tr|A0A7D6ZRF3|A0A7D6ZRF3_9CLOTBeta-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03595PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	503.782025	1005.5495	-1.0027	-0.00050516	0.81771	0.00041195	-0.18503	-9.3215E-05	503.7834915740444	55.633	1.1627	52.338	52.16	53.323	-3.2944	0.05109	3.0573E-05	NaN	58.23	31	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65661			4021	35714	3092	3102							0.046943405859906306
DFKLRSTKV	9	Unmodified	_DFKLRSTKV_					0	0	0			REV__ENST00000321521.13_1_5:102537656-102537803:+|nuORF	REV__ENST00000321521.13_1_5:102537656-102537803:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	547.3236694335938	2	547.321848	1092.62914	-0.12525	-6.8551E-05	-0.37312	-0.00020422	-0.49837	-0.00027277	547.3215284304052	56.926	0.97841	56.926	56.459	57.438	0					53	22	4	0	0	0	0.10502	1	4763	4763		95.815	20.772	1	3446300	+		4022	24447	3093	3103	5350	5350					0.08653407259998858
DFKPLPPWH	9	Unmodified	_DFKPLPPWH_					0	0	0			REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B	REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.818359375	2	568.798009	1135.58147	2.1963	0.0012493	-0.041238	-2.3456E-05	2.1551	0.0012258	568.7977523533963	82.269	1.0134	82.269	81.979	82.992	0					57	23	3	0	0	0	0.027456	1	8516	8516		38.806	0	1	1207300	+		4023	19630	3094	3104	5351	5351					0.01909753059794639
DFKYDYCLE	9	Unmodified	_DFKYDYCLE_					0	0	0			REV__ENSG00000055609|ENST00000262189|KMT2C	REV__ENSG00000055609|ENST00000262189|KMT2C	MULTI-SECPEP	OvCa9_classI_Rep4_	4	598.31689453125	2	598.25244	1194.49033	-0.25134	-0.00015036	1.4247	0.00085234	1.1734	0.00070198	598.254782093974	109.08	0.50131	107.35	107.13	107.63	-1.7256					16	9	3	0	0	0	0.027462	1	10004	10004		47.657	4.7931	1	33373	+		4024	16712	3095	3105	5352	5352					-0.09913923490489651
DFLAGVTQEL	10	Unmodified	_DFLAGVTQEL_					0	0	0		ENST00000535376.5_1_12:1023254-1025717:-|nuORF;ENST00000488642.6_1_12:1023254-1036092:-|nuORF;ENST00000228345.9_1_12:1022559-1036092:-|nuORF;ENSG00000002016|ENST00000358495|RAD52	ENST00000535376.5_1_12:1023254-1025717:-|nuORF	ENST00000535376.5_1_12:1023254-1025717:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	546.7835693359375	2	546.782222	1091.54989	-0.070197	-3.8383E-05	0.48826	0.00026697	0.41806	0.00022859	546.7823661330659	67.428	1.582	67.428	66.816	68.398	0					88	39	5	0	0	0	0.048965	1	6323	6323		129.42	1.9596	1	15250000			4025	809	3096	3106	5353	5353					0.007777155151870829
DFLELLLV	8	Unmodified	_DFLELLLV_					0	0	0		ENST00000466324.1_1_11:64444212-64481216:-|nuORF;nc|ENSG00000110076|Q9P2S2-2|NRXN2;ENSG00000110076|ENST00000265459|NRXN2	ENST00000466324.1_1_11:64444212-64481216:-|nuORF	ENST00000466324.1_1_11:64444212-64481216:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.7681579589844	2	481.283869	960.553185	-0.65961	-0.00031746	-2.0441	-0.00098379	-2.7037	-0.0013012	481.2824831427722	33.945	0.66808	33.945	33.776	34.444	0					23	13	3	0	0	0	0.028476	1	1592	1592		19.36	11.129	1	112150			4026	2755	3097	3107	5354	5354					0.07133010359859782
DFLFVDQQVI	10	Unmodified	_DFLFVDQQVI_					0	0	0			REV__tr|A0A7D6ZFE3|A0A7D6ZFE3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17595PE=4SV=1	REV__tr|A0A7D6ZFE3|A0A7D6ZFE3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17595PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	407.57977294921875	3	408.548406	1222.62339	0.94999	0.00038812	4.4229	0.001807	5.3729	0.0021951	408.5500933714933	58.195	0.85228	54.85	54.444	55.297	-3.3449					21	16	2	0	0	0	0.026906	1	3871	3871		27.047	18.64	1	29804	+		4027	31968	3098	3108	5355	5355					0.02098263957668678
DFLGAFGGLD	10	Unmodified	_DFLGAFGGLD_					0	0	0			REV__ENSG00000159131|ENST00000381815|GART	REV__ENSG00000159131|ENST00000381815|GART	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.8126525878906	2	506.242732	1010.47091	-0.45943	-0.00023258	-0.11492	-5.8177E-05	-0.57435	-0.00029076	506.24256597165663	90.745	1.0748	88.17	87.904	88.979	-2.575					36	20	2	0	0	0	0.026956	1	7808	7808		34.173	20.397	1	77170	+		4028	20597	3099	3109	5356	5356					-0.03390511719089773
DFLGAFGGLD	10	Unmodified	_DFLGAFGGLD_					0	0	0			REV__ENSG00000159131|ENST00000381815|GART	REV__ENSG00000159131|ENST00000381815|GART	MULTI-MATCH	OvCa9_classI_Rep2	2		2	506.242732	1010.47091	1.4254	0.00072162	-1.6033	-0.00081166	-0.17786	-9.0041E-05	506.24176967290987	89.545	1.04	88.243	87.938	88.978	-1.302	0.062812	-0.00085531	NaN	19.997	46	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52972	+		4029	20597	3099	3109							-0.03390511719089773
DFLGKETGQQI	11	Unmodified	_DFLGKETGQQI_					0	0	0		nc|ENSG00000135766|Q9GZT9-3|EGLN1;ENSG00000135766|ENST00000366641|EGLN1;nc|ENSG00000135766|Q9GZT9-2|EGLN1	nc|ENSG00000135766|Q9GZT9-3|EGLN1	nc|ENSG00000135766|Q9GZT9-3|EGLN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	617.810302734375	2	618.31696	1234.61937	1.3829	0.00085507	-1.6683	-0.0010315	-0.28535	-0.00017643	618.3147138640799	112.22	0.69103	112.22	111.79	112.48	0					27	14	3	0	0	0	0.02535	1	12757	12757		53.089	26.042	1	397430			4030	4413	3100	3110	5357	5357					0.011441744639341778
DFLICCQQL	9	Unmodified	_DFLICCQQL_					0	0	0			REV__ENSG00000066027|ENST00000261461|PPP2R5A	REV__ENSG00000066027|ENST00000261461|PPP2R5A	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.761474609375	2	541.754095	1081.49364	1.1017	0.00059687	0.47609	0.00025792	1.5778	0.00085479	541.7542623573922	139.06	0.43771	139.06	138.78	139.22	0					10	8	2	0	0	0	0.027455	1	16212	16212		51.335	12.083	1	74627	+		4031	16806	3101	3111	5358	5358					-0.043849519174955276
DFLIIKDVF	9	Unmodified	_DFLIIKDVF_					0	0	0			REV__tr|A0A7D6VTT7|A0A7D6VTT7_9CLOTHD-GYPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18285PE=4SV=1	REV__tr|A0A7D6VTT7|A0A7D6VTT7_9CLOTHD-GYPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18285PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	554.31884765625	2	555.3157	1108.61685	-0.12662	-7.0314E-05	-1.1553	-0.00064154	-1.2819	-0.00071186	555.314862100922	121.41	0.69148	121.21	120.75	121.44	-0.19718					19	13	2	0	0	0	0.027433	1	11695	11695		60.972	2.19	1	12455	+		4032	31629	3102	3112	5359	5359					0.06688370796928211
DFLIVLPPQ	9	Unmodified	_DFLIVLPPQ_					0	0	0		ENSG00000204710|ENST00000377185|SPDYC	ENSG00000204710|ENST00000377185|SPDYC	ENSG00000204710|ENST00000377185|SPDYC	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.3023681640625	2	521.302593	1040.59063	-1.7904	-0.00093334	-1.0233	-0.00053347	-2.8137	-0.0014668	521.3020127691736	50.387	1.4365	47.245	46.82	48.256	-3.1416					66	27	3	0	0	0	0.55588	1	2906	2906		37.159	0.71236	1	883080			4033	9025	3103	3113	5360	5360					0.07196101625481788
DFLIVNISL	9	Unmodified	_DFLIVNISL_					0	0	0		ENSG00000185313|ENST00000449082|SCN10A;SCN10A|p.I1231T|1|0.38|ENSG00000185313|chr3:38714070-38714070|A/G|missense_variant	ENSG00000185313|ENST00000449082|SCN10A	ENSG00000185313|ENST00000449082|SCN10A	MULTI-MSMS	OvCa99_classI_Rep5	1	517.2994995117188	2	517.30005	1032.58555	1.0297	0.00053269	0.85394	0.00044174	1.8837	0.00097443	517.3001161550404	93.42	0.4524	93.42	93.179	93.632	0					15	10	2	0	0	0	0.26076	1	10136	10136		67.494	6.5217	1	658730			4034	8247	3104	3114	5361	5361					0.07055797762859584
DFLIYDGVID	10	Unmodified	_DFLIYDGVID_					0	0	0		nc|ENSG00000103599|Q86VS3-4|IQCH;nc|ENSG00000103599|Q86VS3-2|IQCH;ENSG00000103599|ENST00000335894|IQCH;nc|ENSG00000103599|Q86VS3-3|IQCH	nc|ENSG00000103599|Q86VS3-4|IQCH	nc|ENSG00000103599|Q86VS3-4|IQCH	MULTI-SECPEP	OvCa9_classI_Rep2	2	584.3028564453125	2	585.289879	1168.56521	0.30828	0.00018043	3.9438	0.0023083	4.2521	0.0024887	585.2918670381256	87.068	0.87513	85.636	85.015	85.891	-1.4311					37	16	3	0	0	0	0.026688	1	7543	7543		49.442	8.6634	1	43312			4035	2333	3105	3115	5362	5362					-0.012334176876265701
DFLKIFLIA	9	Unmodified	_DFLKIFLIA_					0	0	0		tr|A0A553SMW5|A0A553SMW5_NIACIPhosphatidylglycerollysyltransferaseOS=NialliacirculansOX=1397GN=mprFPE=3SV=1	tr|A0A553SMW5|A0A553SMW5_NIACIPhosphatidylglycerollysyltransferaseOS=NialliacirculansOX=1397GN=mprFPE=3SV=1	tr|A0A553SMW5|A0A553SMW5_NIACIPhosphatidylglycerollysyltransferaseOS=NialliacirculansOX=1397GN=mprFPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3319091796875	2	540.328611	1078.64267	0.34656	0.00018726	2.5593	0.0013829	2.9059	0.0015701	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.65476	1	13571	13571		25.45	2.4077	1	342200			4036	33877	3106	3116	5363	5363					0.1064926503922834
DFLKRKKF	8	Unmodified	_DFLKRKKF_					0	0	0		tr|A0A7D6ZGG5|A0A7D6ZGG5_9CLOTDUF1292domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18525PE=4SV=1	tr|A0A7D6ZGG5|A0A7D6ZGG5_9CLOTDUF1292domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18525PE=4SV=1	tr|A0A7D6ZGG5|A0A7D6ZGG5_9CLOTDUF1292domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18525PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2944946289062	2	541.329476	1080.6444	1.2947	0.00070084	3.9979	0.0021642	5.2926	0.002865	541.3331074918775	98.346	0.43073	98.346	98.121	98.552	0					17	9	4	0	0	0	0.028476	1	10811	10811		30.504	0	1	591630			4037	35543	3107	3117	5364	5364					0.1073031884784541
DFLLDALEL	9	Unmodified	_DFLLDALEL_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.3084716796875	2	524.78169	1047.54883	1.3519	0.00070945	0.95145	0.0004993	2.3033	0.0012088	524.7817992511508	122.72	0.92683	122.72	122.45	123.37	0					51	19	4	0	0	0	0.027433	1	14119	14119		71.296	22.085	1	378410			4038	8158	3108	3118	5365	5365					0.026955011462860057
DFLLKKFIL	9	Unmodified	_DFLLKKFIL_					0	0	0			REV__ENST00000469937.2_1_7:46729000-46799342:-|nuORF	REV__ENST00000469937.2_1_7:46729000-46799342:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	568.8532104492188	2	568.857535	1135.70052	-7.0364	-0.0040027	-0.036741	-2.09E-05	-7.0732	-0.0040236	568.857375140279	161.4	1.8223	160.03	159.69	161.51	-1.3692					107	37	5	0	0	0	0.68424	1	14117	14117		21.96	3.6355	1	827460	+		4039	26253	3109	3119	5366	5366					0.1380952696465556
DFLMFPMDL	9	Unmodified	_DFLMFPMDL_					0	0	0			REV__ENSG00000140836|ENST00000268489|ZFHX3	REV__ENSG00000140836|ENST00000268489|ZFHX3	MULTI-SECPEP	OvCa9_classI_Rep3	3	563.84423828125	2	564.758846	1127.50314	-0.93831	-0.00052992	3.8821	0.0021924	2.9437	0.0016625	564.7610561288848	116.65	0.59362	115.61	115.39	115.98	-1.0414					26	11	3	0	0	0	0.027448	1	8706	8706		53.351	20.539	1	21051	+		4040	19702	3110	3120	5367	5367					-0.05551183631951062
DFLNKVKDL	9	Unmodified	_DFLNKVKDL_					0	0	0			REV__BRCA2|p.L3172Afs*44|1|0.79|ENSG00000139618|chr13:32396908-32396911|TACT/-|frameshift_variant	REV__BRCA2|p.L3172Afs*44|1|0.79|ENSG00000139618|chr13:32396908-32396911|TACT/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	546.3021240234375	2	546.308406	1090.60226	0.96724	0.00052841	0.97034	0.0005301	1.9376	0.0010585	546.3088947594271	132.63	1.9213	132.63	132.23	134.15	0					100	40	5	0	0	0	0.46356	1	15492	15492		45.972	5.1941	1	3254800	+		4041	15710	3111	3121	5368	5368					0.060582986487816015
DFLREASIMG	10	Unmodified	_DFLREASIMG_					0	0	0		nc|ENSG00000080224|Q9UF33|EPHA6;ENSG00000080224|ENST00000389672|EPHA6;nc|ENSG00000080224|Q9UF33-2|EPHA6;nc|ENSG00000080224|Q9UF33-3|EPHA6	nc|ENSG00000080224|Q9UF33|EPHA6	nc|ENSG00000080224|Q9UF33|EPHA6	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.307373046875	2	569.781699	1137.54884	-0.16237	-9.2518E-05	1.2659	0.00072127	1.1035	0.00062875	569.7820502453673	104.9	0.82488	104.9	104.62	105.44	0					30	18	3	0	0	0	0.026802	1	11759	11759		26.693	0	1	735690			4042	1631	3112	3122	5369	5369					-0.014428221253865559
DFLRRLFSKKA	11	Unmodified	_DFLRRLFSKKA_					0	0	0			REV__ENSG00000175097|ENST00000311485|RAG2	REV__ENSG00000175097|ENST00000311485|RAG2	MULTI-MSMS	OvCa9_classI_Rep3	3	460.940185546875	3	460.941861	1379.80375	0.9912	0.00045688	-4.1734	-0.0019237	-3.1822	-0.0014668	460.939931944109	66.339	1.2721	63.393	62.959	64.231	-2.9459					62	24	4	0	0	0	0.72493	1	2731	2731		16.53	1.1967	1	124720	+		4043	21869	3113	3123	5370	5370					0.1290440740513077
DFLWDKKEL	9	Unmodified	_DFLWDKKEL_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.7905883789062	2	597.313689	1192.61282	1.4265	0.0008521	-0.91982	-0.00054942	0.50673	0.00030268	597.3140405646874	93.418	0.28532	93.418	93.346	93.632	0					9	6	2	0	0	0	0.027461	1	10135	10135		58.782	2.0609	1	241930	+		4044	18516	3114	3124	5371	5371					0.024222813032565682
DFMGWLGAIQ	10	Unmodified	_DFMGWLGAIQ_					0	0	0		nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;ENST00000465814.5_1_11:72407932-72423670:-|nuORF;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-5|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	569.2776489257812	2	569.273509	1136.53247	-0.082313	-4.6859E-05	1.6028	0.00091242	1.5205	0.00086556	569.2748256174631	56.532	2.7182	56.532	56.094	58.812	0					176	64	6	0	0	0	0.41408	1	4764	4764		66.429	0	1	63821000			4045	8350	3115	3125	5372	5372					-0.030339032914525887
DFMTRVAAL	9	Unmodified	_DFMTRVAAL_					0	0	0		sp|P16789|AN_HCMVAAlkalinenucleaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL98PE=3SV=2;sp|F5HF49|AN_HCMVMAlkalinenucleaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL98PE=3SV=1	sp|P16789|AN_HCMVAAlkalinenucleaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL98PE=3SV=2	sp|P16789|AN_HCMVAAlkalinenucleaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL98PE=3SV=2	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.7672119140625	2	512.268227	1022.5219	1.3519	0.00069253	-0.98268	-0.0005034	0.36922	0.00018914	512.2676792386128	83.572	0.71588	83.572	83.249	83.965	0					20	16	2	0	0	0	0.027462	1	8711	8711		44.117	12.162	1	566890			4046	32870	3116	3126	5373	5373					0.011541140541226014
DFNENFGNL	9	Unmodified	_DFNENFGNL_					0	0	0			REV__tr|A0A7D6ZZB9|A0A7D6ZZB9_9CLOTDUF2325domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05490PE=4SV=1	REV__tr|A0A7D6ZZB9|A0A7D6ZZB9_9CLOTDUF2325domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05490PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.7977905273438	2	535.232896	1068.45124	2.6157	0.0014	2.7518	0.0014729	5.3675	0.0028729	535.2341759665945	101.06	0.50167	101.06	100.86	101.36	0					23	11	3	0	0	0	0.027462	1	11216	11216		26.693	0	1	591300	+		4047	32404	3117	3127	5374	5374					-0.08024887729857255
DFPAKKQVL	9	Unmodified	_DFPAKKQVL_					0	0	0		CON__Q2UVX4	CON__Q2UVX4	CON__Q2UVX4	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3030395507812	2	523.305667	1044.59678	-2.1227	-0.0011108	-1.8084	-0.00094634	-3.9311	-0.0020572	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.62352	1	11351	11351		29.15	3.5755	1	183010		+	4048	642	3118	3128	5375	5375					0.0762661985700106
DFPDIYFL	8	Unmodified	_DFPDIYFL_					0	0	0		nc|ENSG00000185842|Q0VDD8|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	MULTI-SECPEP	OvCa9_classI_Rep3	3	514.2684936523438	2	515.250026	1028.4855	1.8218	0.00093866	-2.0936	-0.0010787	-0.27187	-0.00014008	515.2470276403759	121.95	0.47066	120.93	120.69	121.16	-1.0286					14	8	3	0	0	0	0.028476	1	9373	9373		20.482	3.7769	1	7529.3			4049	15218	3119	3129	5376	5376					-0.02760439570943163
DFPIRQRV	8	Unmodified	_DFPIRQRV_					0	0	0			REV__nc|ENSG00000121988|Q5FWF4-5|ZRANB3	REV__nc|ENSG00000121988|Q5FWF4-5|ZRANB3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.2849731445312	2	515.793258	1029.57196	-2.4068	-0.0012414	-1.4959	-0.0007716	-3.9028	-0.002013	515.7922181692987	108.27	0.6451	106.54	106.22	106.87	-1.7256					14	12	2	0	0	0	0.028476	1	9886	9886		50.025	11.218	1	107380	+		4050	18571	3120	3130	5377	5377					0.05835984774262215
DFPIRQRV	8	Unmodified	_DFPIRQRV_					0	0	0			REV__nc|ENSG00000121988|Q5FWF4-5|ZRANB3	REV__nc|ENSG00000121988|Q5FWF4-5|ZRANB3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.793258	1029.57196	0.13337	6.879E-05	-2.8119	-0.0014504	-2.6786	-0.0013816	515.7916063840839	106.97	0.49599	106.67	106.42	106.92	-0.30836	0.12081	-5.2112E-06	NaN	50.025	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58824	+		4051	18571	3120	3130							0.05835984774262215
DFPIRQRV	8	Unmodified	_DFPIRQRV_					0	0	0			REV__nc|ENSG00000121988|Q5FWF4-5|ZRANB3	REV__nc|ENSG00000121988|Q5FWF4-5|ZRANB3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	515.793258	1029.57196	0.74548	0.00038451	-3.5432	-0.0018276	-2.7977	-0.0014431	515.7913223403289	107.7	0.89507	106.43	106.25	107.15	-1.267	-0.11694	-0.00075959	NaN	50.025	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116400	+		4052	18571	3120	3130							0.05835984774262215
DFPKFLSLL	9	Unmodified	_DFPKFLSLL_					0	0	0		ENST00000510432.1_1_5:147260644-147286043:-|nuORF;nc|nan|Q6UWT4-2|C5orf46;ENSG00000178776|ENST00000318315|C5orf46	ENST00000510432.1_1_5:147260644-147286043:-|nuORF	ENST00000510432.1_1_5:147260644-147286043:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	540.3126831054688	2	540.310418	1078.60628	2.0038	0.0010827	0.21905	0.00011835	2.2229	0.001201	540.3102116380204	113.63	0.86254	113.63	113.33	114.2	0					39	20	3	0	0	0	0.59259	1	12951	12951		32.812	0	1	952420			4053	7775	3121	3131	5378	5378					0.07012388142538839
DFPKIKVSS	9	Unmodified	_DFPKIKVSS_					0	0	0		ENST00000226522.8_1_4:100805248-100808497:-|nuORF	ENST00000226522.8_1_4:100805248-100808497:-|nuORF	ENST00000226522.8_1_4:100805248-100808497:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.23626708984375	2	510.78985	1019.56515	0.47452	0.00024238	-1.1167	-0.00057041	-0.64221	-0.00032803	510.788800553551	66.756	0.36377	66.756	66.575	66.939	0					14	8	2	0	0	0	0.027462	1	6209	6209		27.882	0	1	303600			4054	9707	3122	3132	5379	5379					0.056146271030456774
DFQMSKINL	9	Unmodified	_DFQMSKINL_					0	0	0			REV__nc|ENSG00000156113|Q12791-2|KCNMA1	REV__nc|ENSG00000156113|Q12791-2|KCNMA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.8375854492188	2	548.278792	1094.54303	2.2004	0.0012065	1.4834	0.0008133	3.6838	0.0020198	548.2797736819092	93.943	0.50632	93.943	93.714	94.22	0					26	11	3	0	0	0	0.027462	1	10223	10223		24.519	0	1	1495100	+		4055	28945	3123	3133	5380	5380					-0.00045920637035123946
DFQNGEIQEN	10	Unmodified	_DFQNGEIQEN_					0	0	0		tr|A0A553SKM0|A0A553SKM0_NIACIClassISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_18870PE=4SV=1	tr|A0A553SKM0|A0A553SKM0_NIACIClassISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_18870PE=4SV=1	tr|A0A553SKM0|A0A553SKM0_NIACIClassISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_18870PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	597.2662353515625	2	597.257099	1192.49965	1.9151	0.0011438	4.0938	0.0024451	6.009	0.0035889	597.2595399988703	126.56	0.5944	126.56	126.28	126.87	0					25	12	3	0	0	0	0.48398	1	14645	14645		56.434	5.0983	1	130070			4056	33631	3124	3134	5381	5381					-0.08890438880621332
DFQQLLFIF	9	Unmodified	_DFQQLLFIF_					0	0	0			REV__tr|A0A7D7ABD8|A0A7D7ABD8_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_14955PE=3SV=1	REV__tr|A0A7D7ABD8|A0A7D7ABD8_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_14955PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	585.815185546875	2	585.813325	1169.6121	0.73185	0.00042873	0.42836	0.00025094	1.1602	0.00067966	585.8136759324592	131.89	2.4742	131.89	131.15	133.63	0					227	52	6	0	0	0	0.055688	1	15399	15399		115.46	2.0474	1	37991000	+		4057	32677	3125	3135	5382	5382					0.03407486654191416
DFRKQVELFFY	11	Unmodified	_DFRKQVELFFY_					0	0	0			REV__ENSG00000074755|ENST00000381638|ZZEF1	REV__ENSG00000074755|ENST00000381638|ZZEF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.7646179199219	3	497.925877	1490.7558	-0.46124	-0.00022966	-2.3596	-0.0011749	-2.8208	-0.0014046	497.9247369188758	29.636	0.39841	29.636	29.387	29.785	0					16	7	3	0	0	0	0.02625	1	1090	1090		18.531	5.0231	1	88638	+		4058	16953	3126	3136	5383	5383					0.03005288694475894
DFSFEAIKKL	10	Unmodified	_DFSFEAIKKL_					0	0	0			REV__ENSG00000164151|ENST00000296564|ICE1	REV__ENSG00000164151|ENST00000296564|ICE1	MULTI-MSMS	OvCa99_classI_Rep5	1	599.3317260742188	2	599.329339	1196.64412	0.52525	0.00031479	2.3597	0.0014143	2.885	0.0017291	599.3305537602963	101.91	0.43137	101.91	101.61	102.04	0					21	9	4	0	0	0	0.39172	1	11340	11340		69.628	7.5202	1	937490	+		4059	20949	3127	3137	5384	5384					0.05366854337330551
DFSFEAIKKL	10	Unmodified	_DFSFEAIKKL_					0	0	0			REV__ENSG00000164151|ENST00000296564|ICE1	REV__ENSG00000164151|ENST00000296564|ICE1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	599.329339	1196.64412	0.52525	0.00031479	2.3597	0.0014143	2.885	0.0017291	599.3305537602963	101.91	0.43137	101.91	101.61	102.04	0	0	0	NaN	69.628	21	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	937490	+		4060	20949	3127	3137							0.05366854337330551
DFSHFSTLF	9	Unmodified	_DFSHFSTLF_					0	0	0			REV__L1P1_dup3131|chr21:8366255-8369545:+|1.1341358509163533|0.0129397411743262|6.45|422.0|120|1|anti-sense	REV__L1P1_dup3131|chr21:8366255-8369545:+|1.1341358509163533|0.0129397411743262|6.45|422.0|120|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7996826171875	2	550.756007	1099.49746	2.0463	0.001127	1.036	0.00057058	3.0823	0.0016976	551.2573354651691	84.074	0.29714	84.074	83.88	84.177	0					9	6	2	0	0	0	0.027433	1	8772	8772		38.806	0	1	90970	+		4061	28450	3128	3138	5385	5385					-0.04830822827761949
DFSILLGNK	9	Unmodified	_DFSILLGNK_					0	0	0			REV__tr|A0A7D6ZYU1|A0A7D6ZYU1_9CLOTSugarkinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03490PE=3SV=1	REV__tr|A0A7D6ZYU1|A0A7D6ZYU1_9CLOTSugarkinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03490PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	503.7784423828125	2	503.782025	1005.5495	-3.0867	-0.001555	-3.4935	-0.00176	-6.5803	-0.003315	503.78006253314857	36.309	2.2758	33.6	32.75	35.026	-2.7097					126	45	4	0	0	0	0.56889	1	1557	1557		35.618	2.8059	1	296190	+		4062	32389	3129	3139	5386	5386					0.046943405859906306
DFSKYAKI	8	Unmodified	_DFSKYAKI_					0	0	0		tr|A0A7D6ZXV8|A0A7D6ZXV8_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23500PE=4SV=1	tr|A0A7D6ZXV8|A0A7D6ZXV8_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23500PE=4SV=1	tr|A0A7D6ZXV8|A0A7D6ZXV8_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23500PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.8134765625	2	486.263468	970.512382	1.3805	0.00067128	0.77358	0.00037616	2.1541	0.0010474	486.2637964568853	147.56	0.53011	147.56	147.31	147.84	0					16	10	2	0	0	0	0.028476	1	17234	17234		29.15	0	1	64044			4063	35895	3130	3140	5387	5387					0.025946690402406603
DFSRALLT	8	Unmodified	_DFSRALLT_					0	0	0		nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14	nc|ENSG00000105357|Q7Z406-5|MYH14	nc|ENSG00000105357|Q7Z406-5|MYH14	MULTI-MSMS	OvCa99_classI_Rep5	1	461.7541198730469	2	461.753267	921.491981	-0.21775	-0.00010055	0.79607	0.00036759	0.57832	0.00026704	461.7535034812922	35.73	0.91815	35.73	35.339	36.257	0					30	19	2	0	0	0	0.68714	1	1825	1825		45.952	7.1458	1	598960			4064	2445	3131	3141	5388	5388					0.028094983804294316
DFTKLKLAQ	9	Unmodified	_DFTKLKLAQ_					0	0	0			REV__tr|A0A553SRU0|A0A553SRU0_NIACIPhytoenedesaturaseOS=NialliacirculansOX=1397GN=crtIPE=3SV=1	REV__tr|A0A553SRU0|A0A553SRU0_NIACIPhytoenedesaturaseOS=NialliacirculansOX=1397GN=crtIPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	532.3095092773438	2	532.310949	1062.60735	0.088639	4.7184E-05	-2.9884	-0.0015907	-2.8997	-0.0015436	532.3093379877926	32.528	0.49142	32.528	32.353	32.844	0					21	9	3	0	0	0	0.56889	1	1430	1430		35.618	1.4457	1	308330	+		4065	30765	3132	3142	5389	5389					0.07854602511383746
DFVKIQKAF	9	Unmodified	_DFVKIQKAF_					0	0	0		ENST00000471198.1_1_3:167344976-167371234:-|nuORF;ENSG00000174776|ENST00000682715|WDR49	ENST00000471198.1_1_3:167344976-167371234:-|nuORF	ENST00000471198.1_1_3:167344976-167371234:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.3123779296875	2	548.313492	1094.61243	0.070681	3.8755E-05	0.63689	0.00034921	0.70757	0.00038797	548.313725158766	105.48	0.48015	105.48	105.27	105.75	0					17	10	2	0	0	0	0.027462	1	11864	11864		18.324	4.1873	1	398730			4066	7489	3133	3143	5390	5390					0.0689090637404206
DFVSYYLEP	9	Unmodified	_DFVSYYLEP_					0	0	0		ENST00000582557.5_1_17:29061889-29061943:+|nuORF	ENST00000582557.5_1_17:29061889-29061943:+|nuORF	ENST00000582557.5_1_17:29061889-29061943:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	566.31201171875	2	566.763497	1131.51244	-0.17201	-9.7488E-05	-3.9501	-0.0022388	-4.1221	-0.0023362	566.7601976604773	120.52	0.31375	119.17	119.03	119.35	-1.3444					7	5	2	0	0	0	0.027462	1	11346	11346		23.042	0	1	5769.5			4067	14005	3134	3144	5391	5391					-0.04805375750447638
DFYGNKPNLEV	11	Unmodified	_DFYGNKPNLEV_					0	0	0		tr|A0A7D6ZYU5|A0A7D6ZYU5_9CLOTtRNA-dihydrouridinesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17880PE=3SV=1	tr|A0A7D6ZYU5|A0A7D6ZYU5_9CLOTtRNA-dihydrouridinesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17880PE=3SV=1	tr|A0A7D6ZYU5|A0A7D6ZYU5_9CLOTtRNA-dihydrouridinesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17880PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	648.2508544921875	2	648.31696	1294.61937	0.89681	0.00058142	2.5358	0.001644	3.4326	0.0022254	648.3180296632131	141.61	0.90054	141.61	141.23	142.14	0					34	17	3	0	0	0	0.02523	1	16557	16557		46.457	1.4346	1	74079			4068	35931	3135	3145	5392	5392					-0.016158255360551266
DFYKRGEV	8	Unmodified	_DFYKRGEV_					0	0	0			REV__ENST00000476917.5_1_10:126095965-126100767:-|nuORF	REV__ENST00000476917.5_1_10:126095965-126100767:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3212585449219	2	507.256174	1012.49779	2.6658	0.0013522	-1.3728	-0.00069636	1.293	0.00065589	507.25565265220536	97.154	0.72955	97.154	96.966	97.696	0					22	16	2	0	0	0	0.028476	1	10718	10718		73.975	20.623	1	338410	+		4069	16786	3136	3146	5393	5393					-0.007954031079066226
DFYKRGEV	8	Unmodified	_DFYKRGEV_					0	0	0			REV__ENST00000476917.5_1_10:126095965-126100767:-|nuORF	REV__ENST00000476917.5_1_10:126095965-126100767:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	507.256174	1012.49779	-0.54304	-0.00027546	0.21042	0.00010674	-0.33261	-0.00016872	507.2560669305835	98.085	0.48475	97.192	97.023	97.508	-0.89305	-0.0094636	0.00090341	NaN	73.975	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7087.1	+		4070	16786	3136	3146							-0.007954031079066226
DFYKRGEV	8	Unmodified	_DFYKRGEV_					0	0	0			REV__ENST00000476917.5_1_10:126095965-126100767:-|nuORF	REV__ENST00000476917.5_1_10:126095965-126100767:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	507.256174	1012.49779	-0.62701	-0.00031805	0.51169	0.00025956	-0.11532	-5.8499E-05	507.2565594177977	98.942	0.51732	97.257	96.956	97.474	-1.685	0.056182	0.001209	NaN	73.975	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15253	+		4071	16786	3136	3146							-0.007954031079066226
DFYNHLDK	8	Unmodified	_DFYNHLDK_					0	0	0		ENSG00000111713|ENST00000261195|GYS2	ENSG00000111713|ENST00000261195|GYS2	ENSG00000111713|ENST00000261195|GYS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2627563476562	2	526.245806	1050.47706	1.738	0.00091461	0.33654	0.0001771	2.0745	0.0010917	526.2454603627604	136.56	0.23901	136.56	136.44	136.68	0					6	4	2	0	0	0	0.028476	1	15924	15924		55.504	0	1	14862			4072	2847	3137	3147	5394	5394					-0.04615993487595915
DGAKEAGRR	9	Unmodified	_DGAKEAGRR_					0	0	0		ENST00000605920.1_1_10:81586022-81586202:+|nuORF	ENST00000605920.1_1_10:81586022-81586202:+|nuORF	ENST00000605920.1_1_10:81586022-81586202:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.8073425292969	2	480.254497	958.494441	-0.67675	-0.00032501	-3.9908	-0.0019166	-4.6676	-0.0022416	480.25246491735174	55.71	0.40767	52.415	52.311	52.718	-3.2944					9	7	2	0	0	0	0.027441	1	3559	3559		40.778	16.575	1	34094			4073	14272	3138	3148	5395	5395					0.013533468380956037
DGAMAHYLD	9	Unmodified	_DGAMAHYLD_					0	0	0			REV__nc|ENSG00000116985|P34820-2|BMP8B	REV__nc|ENSG00000116985|P34820-2|BMP8B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.791259765625	2	496.710742	991.406931	-0.16042	-7.968E-05	-4.1284	-0.0020506	-4.2889	-0.0021303	496.70854053414166	76.218	0.56493	73.279	73.033	73.598	-2.9389					16	11	2	0	0	0	0.027462	1	6027	6027		14.865	0	1	52993	+		4074	18329	3139	3149	5396	5396					-0.089116151476901
DGATEVSAALQ	11	Unmodified	_DGATEVSAALQ_					0	0	0			REV__ENST00000473330.1_1_7:5642709-5645102:+|nuORF	REV__ENST00000473330.1_1_7:5642709-5645102:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	531.2625122070312	2	531.259111	1060.50367	2.0859	0.0011082	-1.1568	-0.00061459	0.92908	0.00049358	531.2595616614012	85.687	0.61388	85.687	85.38	85.994	0					52	14	5	0	0	0	0.34051	1	8990	8990		65.465	8.7443	1	4520100	+		4075	16976	3140	3150	5397	5397					-0.02416349386908223
DGAVVQVWLT	10	Unmodified	_DGAVVQVWLT_					0	0	0			REV__ENST00000416281.6_1_11:67048455-67049666:+|nuORF	REV__ENST00000416281.6_1_11:67048455-67049666:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.7913208007812	2	544.292756	1086.57096	-1.3782	-0.00075014	-1.6369	-0.00089093	-3.0151	-0.0016411	544.2920382300579	53.531	1.5669	50.323	49.502	51.069	-3.208					48	30	4	0	0	0	0.026681	1	3343	3343		36.447	15.5	1	142500	+		4076	25545	3141	3151	5398	5398					0.031137256147076187
DGCSLVRHNT	10	Unmodified	_DGCSLVRHNT_					0	0	0			REV__ENST00000506714.5_1_4:89300148-89319290:+|nuORF	REV__ENST00000506714.5_1_4:89300148-89319290:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.3043823242188	2	551.258922	1100.50329	0.041481	2.2867E-05	-3.6876	-0.0020328	-3.6461	-0.0020099	551.2569343818457	64.276	0.44011	60.801	60.588	61.028	-3.475					13	8	2	0	0	0	0.026548	1	4544	4544		72.879	6.45	1	37431	+		4077	19552	3142	3152	5399	5399					-0.042940475877458084
DGDKWDVPT	9	Unmodified	_DGDKWDVPT_					0	0	0			REV__ENSG00000117592|ENST00000340385|PRDX6	REV__ENSG00000117592|ENST00000340385|PRDX6	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7791748046875	2	516.735271	1031.45599	-1.0575	-0.00054646	-2.9837	-0.0015418	-4.0412	-0.0020883	516.7337240766745	41.923	0.51842	41.923	41.724	42.242	0					23	11	3	0	0	0	0.027418	1	2687	2687		32.812	0	1	189490	+		4078	18357	3143	3153	5400	5400					-0.05848003587107087
DGDLDFKFTV	10	Unmodified	_DGDLDFKFTV_					0	0	0			REV__nc|ENSG00000060237|Q9H4A3-5|WNK1	REV__nc|ENSG00000060237|Q9H4A3-5|WNK1	MULTI-MSMS	OvCa99_classI_Rep5	1	578.7787475585938	2	578.779679	1155.5448	1.9143	0.001108	-2.9815	-0.0017256	-1.0672	-0.00061769	578.7778554391411	93.904	0.42192	93.904	93.714	94.136	0					16	9	2	0	0	0	0.50999	1	10211	10211		52.937	11.51	1	887180	+		4079	28719	3144	3154	5401	5401					-0.02674588347417739
DGEYFTFR	8	Unmodified	_DGEYFTFR_					0	0	0		TP53|p.L330Ffs*15|1|0.51|ENSG00000141510|chr17:7673540-7673540|G/-|frameshift_variant	TP53|p.L330Ffs*15|1|0.51|ENSG00000141510|chr17:7673540-7673540|G/-|frameshift_variant	TP53|p.L330Ffs*15|1|0.51|ENSG00000141510|chr17:7673540-7673540|G/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.7822265625	2	517.732532	1033.45051	0.94434	0.00048891	-0.26398	-0.00013667	0.68036	0.00035224	517.7322594907289	149.85	0.89265	149.85	149.4	150.29	0					30	17	3	0	0	0	0.028476	1	17536	17536		17.365	0	1	53026			4080	32977	3145	3155	5402	5402					-0.06487682378883619
DGGGRAAPL	9	Unmodified	_DGGGRAAPL_					0	0	0		ENST00000394464.6_1_5:142780375-142783084:-|nuORF	ENST00000394464.6_1_5:142780375-142783084:-|nuORF	ENST00000394464.6_1_5:142780375-142783084:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	406.7541198730469	2	407.214309	812.414065	1.2166	0.00049541	3.3323	0.001357	4.5489	0.0018524	407.2155470064339	74.98	0.86884	71.749	71.483	72.351	-3.2308					27	17	2	0	0	0	0.027433	1	5932	5932		47.916	22.465	1	44596			4081	11265	3146	3156	5403	5403					0.0003548551504763964
DGGGRAAPL	9	Unmodified	_DGGGRAAPL_					0	0	0		ENST00000394464.6_1_5:142780375-142783084:-|nuORF	ENST00000394464.6_1_5:142780375-142783084:-|nuORF	ENST00000394464.6_1_5:142780375-142783084:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	407.214309	812.414065	0.85223	0.00034704	2.951	0.0012017	3.8033	0.0015487	407.215264179984	73.889	0.94608	71.817	71.225	72.171	-2.0719	0.033929	-0.00024531	NaN	47.916	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18557			4082	11265	3146	3156							0.0003548551504763964
DGGPGLGVRE	10	Unmodified	_DGGPGLGVRE_					0	0	0		nc|ENSG00000008300|Q9NYQ7-2|CELSR3;ENSG00000008300|ENST00000164024|CELSR3;CELSR3|p.Y895Pfs*11|1|0.07|ENSG00000008300|chr3:48659949-48659953|GATAG/-|frameshift_variant	nc|ENSG00000008300|Q9NYQ7-2|CELSR3	nc|ENSG00000008300|Q9NYQ7-2|CELSR3	MULTI-MSMS	OvCa9_classI_Rep2	2	478.7431335449219	2	478.743431	955.472308	-1.7394	-0.00083273	1.5256	0.00073039	-0.21377	-0.00010234	478.74406858584246	38.268	0.7914	35.558	35.271	36.062	-2.7097					27	15	2	0	0	0	0.45822	1	1783	1783		60.118	4.6141	1	54474			4083	916	3147	3157	5404	5404					-0.007208776303286868
DGGSQLDPGGI	11	Unmodified	_DGGSQLDPGGI_					0	0	0			REV__ENST00000418304.1_3_1:235490262-235491379:-|nuORF	REV__ENST00000418304.1_3_1:235490262-235491379:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.23779296875	2	508.238178	1014.4618	0.33312	0.00016931	-0.95943	-0.00048762	-0.6263	-0.00031831	508.2375828903591	111.09	1.4212	109.49	109.02	110.44	-1.6011					45	26	3	0	0	0	0.6112	1	10229	10229		43.651	2.8726	1	115350	+		4084	25570	3148	3158	5405	5405					-0.04484905075412371
DGGSVHRSDD	10	Unmodified	_DGGSVHRSDD_					0	0	0		ENST00000409001.5_1_2:182756891-182760783:+|nuORF	ENST00000409001.5_1_2:182756891-182760783:+|nuORF	ENST00000409001.5_1_2:182756891-182760783:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.78125	2	522.720684	1043.42681	0.39097	0.00020437	2.5564	0.0013363	2.9473	0.0015406	522.7217985619882	67.296	0.54585	63.806	63.492	64.037	-3.4902					15	10	2	0	0	0	0.02665	1	4899	4899		78.264	32.312	1	14938			4085	11509	3149	3159	5406	5406					-0.0931614788337356
DGGVGCPPSLL	11	Unmodified	_DGGVGCPPSLL_					0	0	0			REV__ENST00000488463.5_1_1:40778452-40781106:-|nuORF	REV__ENST00000488463.5_1_1:40778452-40781106:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.3009948730469	2	507.749867	1013.48518	1.5465	0.00078523	-1.5812	-0.00080285	-0.034699	-1.7618E-05	508.250907687496	90.089	0.34735	88.787	88.631	88.978	-1.302					8	6	2	0	0	0	0.025453	1	7962	7962		36.447	4.9169	1	6509.8	+		4086	26620	3150	3160	5407	5407					-0.02102182562452981
DGHRLSHW	8	Unmodified	_DGHRLSHW_					0	0	0			REV__sp|Q6SWA4|UL27_HCMVMProteinUL27OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL27PE=1SV=1	REV__sp|Q6SWA4|UL27_HCMVMProteinUL27OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL27PE=1SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	504.2442932128906	2	504.243932	1006.47331	-0.92391	-0.00046588	0.85335	0.0004303	-0.070556	-3.5577E-05	504.24427458524434	28.055	0.49868	28.055	27.891	28.39	0					16	9	2	0	0	0	0.73766	1	896	896		32.812	0	1	90266	+		4087	29427	3151	3161	5408	5408					-0.029666184707707544
DGIDAPPVLQ	10	Unmodified	_DGIDAPPVLQ_					0	0	0			REV__nc|ENSG00000290425|Q8N8J0|PI4KAP1	REV__nc|ENSG00000290425|Q8N8J0|PI4KAP1	MULTI-MSMS	OvCa9_classI_Rep2	2	512.7684936523438	2	512.769114	1023.52368	-0.37168	-0.00019059	-1.8553	-0.00095135	-2.227	-0.0011419	512.7681442537512	39.787	0.94422	37.077	36.805	37.749	-2.7097					35	18	3	0	0	0	0.6104	1	1967	1967		40.778	1.5253	1	128180	+		4088	24840	3152	3162	5409	5409					0.01285446343717922
DGIDLKLAE	9	Unmodified	_DGIDLKLAE_					0	0	0			REV__tr|A0A553SUJ2|A0A553SUJ2_NIACIGlyoxalaseOS=NialliacirculansOX=1397GN=CEQ21_00465PE=4SV=1	REV__tr|A0A553SUJ2|A0A553SUJ2_NIACIGlyoxalaseOS=NialliacirculansOX=1397GN=CEQ21_00465PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.299072265625	2	487.263665	972.512776	1.7139	0.00083511	1.9039	0.00092772	3.6178	0.0017628	487.26423382861407	111	0.48476	111	110.71	111.2	0					15	10	2	0	0	0	0.027447	1	12619	12619		47.657	0	1	97576	+		4089	31085	3153	3163	5410	5410					0.025420439694244124
DGIILPQL	8	Unmodified	_DGIILPQL_					0	0	0		ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	MULTI-MSMS	OvCa9_classI_Rep3	3	434.7591552734375	2	434.760561	867.506569	-1.3377	-0.00058158	-1.6289	-0.00070818	-2.9666	-0.0012898	434.7597358333452	139.11	1.8707	138.05	137.63	139.51	-1.0595					91	37	4	0	0	0	0.73626	1	11385	11385		33.516	5.6333	1	610970			4090	2932	3154	3164	5411	5411					0.06751570528570028
DGKDGKLRL	9	Unmodified	_DGKDGKLRL_					0	0	0			REV__ENSG00000187498|ENST00000375820|COL4A1	REV__ENSG00000187498|ENST00000375820|COL4A1	MULTI-MSMS	OvCa9_classI_Rep2	2	501.2896728515625	2	501.290548	1000.56654	-0.80197	-0.00040202	0.50048	0.00025089	-0.30149	-0.00015113	501.2906816095173	135.63	4.8104	135.4	133.71	138.52	-0.22697					221	98	3	0	0	0	0.64427	1	13381	13381		26.693	1.1189	1	70595	+		4091	22641	3155	3165	5412	5412					0.06628261191792717
DGKVTVRR	8	Unmodified	_DGKVTVRR_					0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	MULTI-MSMS	OvCa9_classI_Rep2	2	465.77642822265625	2	465.777608	929.540663	0.94669	0.00044095	-1.1608	-0.00054067	-0.21409	-9.9719E-05	465.77698802825387	129.18	5.3362	128.95	126.4	131.74	-0.22696					134	107	2	0	0	0	0.73938	1	12805	12805		31.955	1.4512	1	42405			4092	8067	3156	3166	5413	5413					0.07307411740180214
DGLKLGLSTL	10	Unmodified	_DGLKLGLSTL_					0	0	0			REV__nc|ENSG00000115295|Q8N3C7-4|CLIP4	REV__nc|ENSG00000115295|Q8N3C7-4|CLIP4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.81390380859375	2	508.802957	1015.59136	-0.36132	-0.00018384	1.5982	0.00081315	1.2368	0.00062931	508.8037123284671	58.153	1.1059	54.808	54.291	55.397	-3.3449					34	21	2	0	0	0	0.026551	1	3793	3793		79.713	19.594	1	60816	+		4093	18233	3157	3167	5414	5414					0.08418896274520193
DGLNLRLVGLL	11	Unmodified	_DGLNLRLVGLL_					0	0	0			REV__nc|ENSG00000159082|O43426-4|SYNJ1	REV__nc|ENSG00000159082|O43426-4|SYNJ1	MULTI-MSMS	OvCa9_classI_Rep3	3	591.8640747070312	2	591.86388	1181.71321	0.72408	0.00042856	0.6408	0.00037927	1.3649	0.00080783	591.8641978183085	65.182	2.2339	62.236	61.844	64.078	-2.9459					105	43	4	0	0	0	0.69081	1	2630	2630		32.812	0	1	184170	+		4094	20592	3158	3168	5415	5415					0.12961938356897917
DGLRRLAH	8	Unmodified	_DGLRRLAH_					0	0	0		ENST00000588460.5_1_17:74733301-74733829:+|nuORF	ENST00000588460.5_1_17:74733301-74733829:+|nuORF	ENST00000588460.5_1_17:74733301-74733829:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	468.2814636230469	2	469.26995	936.525347	0.96341	0.0004521	-1.5539	-0.00072921	-0.59053	-0.00027712	469.26927091549607	142.12	1.2471	142.12	141.59	142.83	0					38	24	2	0	0	0	0.028476	1	16596	16596		30.504	0	1	42098			4095	14075	3159	3169	5416	5416					0.05454544942972461
DGNHDLVPL	9	Unmodified	_DGNHDLVPL_					0	0	0			REV__ENSG00000173276|ENST00000310826|ZBTB21	REV__ENSG00000173276|ENST00000310826|ZBTB21	MULTI-MSMS	OvCa9_classI_Rep2	2	490.24603271484375	2	490.245806	978.47706	-1.2971	-0.00063592	-0.0036646	-1.7965E-06	-1.3008	-0.00063771	490.24574571549454	62.48	3.0118	59.721	59.187	62.199	-2.7593					88	57	2	0	0	0	0.63422	1	4678	4678		27.882	1.0861	1	956700	+		4096	21764	3160	3170	5417	5417					-0.013039934875905601
DGNVLRLAL	9	Unmodified	_DGNVLRLAL_					0	0	0			REV__nc|ENSG00000187908|Q9UGM3-3|DMBT1	REV__nc|ENSG00000187908|Q9UGM3-3|DMBT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.78814697265625	2	485.787641	969.56073	-2.4364	-0.0011836	1.4911	0.00072436	-0.94534	-0.00045924	485.78818782578804	88.256	2.2477	85.653	84.874	87.122	-2.6027					99	44	4	0	0	0	0.40667	1	7508	7508		51.335	0.14276	1	1024400	+		4097	29062	3161	3171	5418	5418					0.07473162680128098
DGPSVLINPN	10	Unmodified	_DGPSVLINPN_					0	0	0			REV__tr|A0A7D6ZUJ0|A0A7D6ZUJ0_9CLOTPhosphatidylserinedecarboxylaseproenzymeOS=ClostridiumintestinaleOX=36845GN=psdPE=3SV=1	REV__tr|A0A7D6ZUJ0|A0A7D6ZUJ0_9CLOTPhosphatidylserinedecarboxylaseproenzymeOS=ClostridiumintestinaleOX=36845GN=psdPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	514.2428588867188	2	513.266739	1024.51892	-0.81526	-0.00041845	-0.22832	-0.00011719	-1.0436	-0.00053563	513.2668978544232	84.617	1.575	82.356	82.02	83.595	-2.261					62	29	3	0	0	0	0.027028	1	5023	5023		39.253	3.6345	1	165440	+		4098	32221	3162	3172	5419	5419					0.007645622009476938
DGRLLQLSI	9	Unmodified	_DGRLLQLSI_					0	0	0			REV__DOCK3|p.K1465Pfs*18|1|0.29|ENSG00000088538|chr3:51356230-51356231|-/TCCCCTCACCTTTCACACACAGCTTCCTTGGGGACCA|frameshift_variant	REV__DOCK3|p.K1465Pfs*18|1|0.29|ENSG00000088538|chr3:51356230-51356231|-/TCCCCTCACCTTTCACACACAGCTTCCTTGGGGACCA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7998962402344	2	507.800749	1013.58694	-1.3545	-0.0006878	0.98637	0.00050088	-0.3681	-0.00018692	507.8011650052205	54.128	1.8434	51.314	50.529	52.372	-2.8139					84	36	4	0	0	0	0.3249	1	3733	3733		60.118	5.3419	1	436050	+		4099	16329	3163	3173	5420	5420					0.0806943185162936
DGRLLQLSI	9	Unmodified	_DGRLLQLSI_					0	0	0			REV__DOCK3|p.K1465Pfs*18|1|0.29|ENSG00000088538|chr3:51356230-51356231|-/TCCCCTCACCTTTCACACACAGCTTCCTTGGGGACCA|frameshift_variant	REV__DOCK3|p.K1465Pfs*18|1|0.29|ENSG00000088538|chr3:51356230-51356231|-/TCCCCTCACCTTTCACACACAGCTTCCTTGGGGACCA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.8019714355469	2	507.800749	1013.58694	-1.2338	-0.00062655	0.78921	0.00040076	-0.44464	-0.00022579	507.8011244097221	54.456	2.4006	51.208	50.466	52.866	-3.2474					94	46	4	0	0	0	0.1944	1	3425	3425		77.318	4.4383	1	1499800	+		4100	16329	3163	3173	5421	5421					0.0806943185162936
DGRLRLRFT	9	Unmodified	_DGRLRLRFT_					0	0	0		ENST00000466324.1_1_11:64444212-64481216:-|nuORF;nc|ENSG00000110076|Q9P2S2-2|NRXN2;ENSG00000110076|ENST00000265459|NRXN2	ENST00000466324.1_1_11:64444212-64481216:-|nuORF	ENST00000466324.1_1_11:64444212-64481216:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3272094726562	2	567.330539	1132.64652	-2.6412	-0.0014984	1.1543	0.0006549	-1.4869	-0.00084354	567.3310908608092	141.92	3.9983	140.91	138.91	142.91	-1.0106					224	80	5	0	0	0	0.56889	1	11703	11703		35.618	2.8059	1	127690			4101	2755	3164	3174	5422	5422					0.08550747585650242
DGRMIQKEI	9	Unmodified	_DGRMIQKEI_					0	0	0			REV__tr|A0A553STG3|A0A553STG3_NIACINUDIXdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04980PE=3SV=1	REV__tr|A0A553STG3|A0A553STG3_NIACINUDIXdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04980PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	545.3174438476562	2	545.289691	1088.56483	-1.8614	-0.001015	-1.3671	-0.00074546	-3.2285	-0.0017605	545.289046057628	62.267	0.80217	59.508	59.187	59.989	-2.7593					30	15	3	0	0	0	0.027043	1	4666	4666		68.846	14.07	1	30149	+		4102	30958	3165	3175	5423	5423					0.02408884111559928
DGRPAPGRHH	10	Unmodified	_DGRPAPGRHH_					0	0	0		ENST00000333503.7_1_16:2263822-2264047:-|nuORF	ENST00000333503.7_1_16:2263822-2264047:-|nuORF	ENST00000333503.7_1_16:2263822-2264047:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	550.3521728515625	2	550.278838	1098.54312	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.098	1	18.759	18.259	19.259	-1.3386								0	0	0	0.14376	1	11	11		51.193	1.7511	1				4103	10468	3166	3176	5424	5424					-0.0022073980214827316
DGSLIVSSSY	10	Unmodified	_DGSLIVSSSY_					0	0	0		ENSG00000196363|ENST00000358625|WDR5	ENSG00000196363|ENST00000358625|WDR5	ENSG00000196363|ENST00000358625|WDR5	MULTI-SECPEP	OvCa9_classI_Rep3	3	514.3115844726562	2	514.250754	1026.48696	0.74752	0.00038441	-0.49438	-0.00025424	0.25314	0.00013018	514.2505625287201	105.05	0.7285	103.7	103.31	104.04	-1.3482					18	13	2	0	0	0	0.027213	1	7343	7343		76.774	0	1	16139			4104	8596	3167	3177	5425	5425					-0.02522850272839605
DGSLLFEFL	9	Unmodified	_DGSLLFEFL_					0	0	0		ENSG00000176142|ENST00000319172|TMEM39A;ENST00000486159.5_1_3:119156911-119180963:-|nuORF;nc|ENSG00000176142|Q9NV64-2|TMEM39A;ENST00000486235.5_1_3:119165863-119180852:-|nuORF	ENSG00000176142|ENST00000319172|TMEM39A	ENSG00000176142|ENST00000319172|TMEM39A	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.3011474609375	2	520.768583	1039.52261	-0.76761	-0.00039975	-3.7907	-0.0019741	-4.5583	-0.0023738	520.7664978496914	81.956	1.8209	79.659	79.534	81.354	-2.2963					49	36	2	0	0	0	0.02741	1	4615	4615		60.972	0	1	50387			4105	7585	3168	3178	5426	5426					0.004432319748275404
DGSLRAPQL	9	Unmodified	_DGSLRAPQL_					0	0	0			REV__nc|ENSG00000033122|Q96NW7-2|LRRC7	REV__nc|ENSG00000033122|Q96NW7-2|LRRC7	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.28558349609375	2	478.761623	955.508694	0.31089	0.00014884	-0.83709	-0.00040076	-0.52619	-0.00025192	478.7612322816731	58.108	0.71325	58.108	57.859	58.572	0					33	16	4	0	0	0	0.027462	1	4963	4963		35.152	0	1	601170	+		4106	16594	3169	3179	5427	5427					0.029159992663721823
DGSSSEQRRRA	11	Unmodified	_DGSSSEQRRRA_					0	0	0			REV__ENST00000368440.4_1_6:123110430-123116840:+|nuORF	REV__ENST00000368440.4_1_6:123110430-123116840:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	624.807373046875	2	624.805614	1247.59667	-0.43414	-0.00027126	0.61109	0.00038181	0.17695	0.00011056	624.8057836470783	61.949	2.2231	61.949	60.518	62.741	0					126	52	4	0	0	0	0.38584	1	5495	5495		80.455	20.336	1	3271300	+		4107	24919	3170	3180	5428	5428					-0.01722031880922259
DGTKQKVAR	9	Unmodified	_DGTKQKVAR_					0	0	0			REV__ENSG00000166448|ENST00000339375|TMEM130;REV__nc|ENSG00000166448|Q8N3G9-3|TMEM130	REV__nc|ENSG00000166448|Q8N3G9-3|TMEM130	MULTI-SECPEP	OvCa9_classI_Rep2	2	502.7802429199219	2	501.788173	1001.56179	0.63159	0.00031692	-1.0338	-0.00051875	-0.4022	-0.00020182	502.28801819678995	87.293	0.78706	85.862	85.741	86.528	-1.4311					19	15	2	0	0	0	0.027462	1	7645	7645		16.473	4.9621	1	35621	+		4108	21195;28979	3171	3181	5429	5429					0.061073770490338575
DHALKFIFYE	10	Unmodified	_DHALKFIFYE_					0	0	0		nc|ENSG00000154678|Q14123-2|PDE1C;ENSG00000154678|ENST00000396191|PDE1C;nc|ENSG00000154678|Q14123-3|PDE1C	nc|ENSG00000154678|Q14123-2|PDE1C	nc|ENSG00000154678|Q14123-2|PDE1C	MULTI-MSMS	OvCa99_classI_Rep5	1	641.8261108398438	2	641.826963	1281.63937	-0.17812	-0.00011432	-2.0672	-0.0013268	-2.2453	-0.0014411	641.8255931692237	38.773	1.4374	38.773	37.983	39.42	0					77	31	4	0	0	0	0.5635	1	2221	2221		42.396	0	1	2404000			4109	5747	3172	3182	5430	5430					0.009819701945616544
DHATRLDALN	10	Unmodified	_DHATRLDALN_					0	0	0			REV__ENSG00000182957|ENST00000382108|SPATA13	REV__ENSG00000182957|ENST00000382108|SPATA13	MSMS	OvCa99_classI_Rep5	1	563.289306640625	2	563.285994	1124.55744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.268	1	84.268	83.768	84.768	0								0	0	0	0.082999	1	8797	8797		77.318	9.8239	1		+		4110	22329	3173	3183	5431	5431					0.00013867835468772682
DHDNDKESDVE	11	Unmodified	_DHDNDKESDVE_					0	0	0		ENST00000469550.6_1_5:141001037-141014565:-|nuORF;ENSG00000171720|ENST00000305264|HDAC3;nc|ENSG00000171720|O15379-2|HDAC3	ENST00000469550.6_1_5:141001037-141014565:-|nuORF	ENST00000469550.6_1_5:141001037-141014565:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	435.72772216796875	3	434.840866	1301.50077	0.23281	0.00010123	0.4457	0.00019381	0.67851	0.00029504	434.84111821237065	47.961	0.26083	47.961	47.812	48.073	0					10	5	2	0	0	0	0.026132	1	3493	3493		10.998	0	1	83747			4111	7227	3174	3184	5432	5432					-0.13792269302371096
DHELLWEV	8	Unmodified	_DHELLWEV_					0	0	0		ENSG00000198780|ENST00000687041|FAM169A	ENSG00000198780|ENST00000687041|FAM169A	ENSG00000198780|ENST00000687041|FAM169A	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.8125	2	520.756007	1039.49746	1.8771	0.00097753	0.47317	0.0002464	2.3503	0.0012239	520.7560067422932	121.02	0.5071	121.02	120.78	121.29	0					24	11	3	0	0	0	0.028476	1	13941	13941		33.516	0	1	238750			4112	8871	3175	3185	5433	5433					-0.020708228277499074
DHFSDPKF	8	Unmodified	_DHFSDPKF_					0	0	0		ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-2|PSME4;nc|ENSG00000068878|Q14997-3|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	OvCa9_classI_Rep3	3	496.7281188964844	2	496.727249	991.439946	2.0847	0.0010356	-2.5278	-0.0012556	-0.443	-0.00022005	496.7256667466894	56.454	1.7894	53.303	52.476	54.265	-3.1504					88	62	2	0	0	0	0.75723	1	1656	1656		23.042	2.0956	1	26855			4113	1399	3176	3186	5434	5434					-0.056116650333365214
DHGKTTLLDKF	11	Unmodified	_DHGKTTLLDKF_					0	0	0		ENSG00000085760|ENST00000263629|MTIF2	ENSG00000085760|ENST00000263629|MTIF2	ENSG00000085760|ENST00000263629|MTIF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	425.5638122558594	3	425.562827	1273.66665	-0.64889	-0.00027614	1.4166	0.00060284	0.76768	0.0003267	425.5634355212521	71.059	2.9087	67.603	67.251	70.16	-3.4563					178	59	6	0	0	0	0.63561	1	5403	5403		43.419	8.2403	1	1431800			4114	1739	3177	3187	5435	5435					0.040764537349332386
DHIATPLTLFF	11	Unmodified	_DHIATPLTLFF_					0	0	0			REV__ENST00000345985.7_1_2:10711800-10711884:-|nuORF	REV__ENST00000345985.7_1_2:10711800-10711884:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	425.5635070800781	3	425.564168	1273.67067	1.0852	0.00046181	-3.421	-0.0014559	-2.3359	-0.00099406	425.56271987767565	69.963	3.6895	67.243	66.706	70.396	-2.7196					254	73	5	0	0	0	0.68391	1	3242	3242		35.178	0.026198	1	1255000	+		4115	24695	3178	3188	5436	5436					0.044785432286289506
DHIEGFAPE	9	Unmodified	_DHIEGFAPE_					0	0	0		tr|A0A553SIZ9|A0A553SIZ9_NIACIProline--tRNAligaseOS=NialliacirculansOX=1397GN=proSPE=3SV=1	tr|A0A553SIZ9|A0A553SIZ9_NIACIProline--tRNAligaseOS=NialliacirculansOX=1397GN=proSPE=3SV=1	tr|A0A553SIZ9|A0A553SIZ9_NIACIProline--tRNAligaseOS=NialliacirculansOX=1397GN=proSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7327880859375	2	507.729989	1013.44543	-0.48016	-0.00024379	4.1912	0.002128	3.7111	0.0018842	507.73186772658914	65.166	1.0163	61.68	61.358	62.374	-3.4854					67	20	4	0	0	0	0.16524	1	4691	4691		82.305	10.927	1	442150			4116	33446	3179	3189	5437	5437					-0.0607598624151251
DHIEGFAPE	9	Unmodified	_DHIEGFAPE_					0	0	0		tr|A0A553SIZ9|A0A553SIZ9_NIACIProline--tRNAligaseOS=NialliacirculansOX=1397GN=proSPE=3SV=1	tr|A0A553SIZ9|A0A553SIZ9_NIACIProline--tRNAligaseOS=NialliacirculansOX=1397GN=proSPE=3SV=1	tr|A0A553SIZ9|A0A553SIZ9_NIACIProline--tRNAligaseOS=NialliacirculansOX=1397GN=proSPE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	507.729989	1013.44543	-0.2776	-0.00014095	3.5158	0.0017851	3.2382	0.0016441	507.73158313300905	61.956	0.75018	61.956	61.585	62.335	0	0.19582	0.00033591	NaN	82.305	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	846750			4117	33446	3179	3189							-0.0607598624151251
DHIEGFAPE	9	Unmodified	_DHIEGFAPE_					0	0	0		tr|A0A553SIZ9|A0A553SIZ9_NIACIProline--tRNAligaseOS=NialliacirculansOX=1397GN=proSPE=3SV=1	tr|A0A553SIZ9|A0A553SIZ9_NIACIProline--tRNAligaseOS=NialliacirculansOX=1397GN=proSPE=3SV=1	tr|A0A553SIZ9|A0A553SIZ9_NIACIProline--tRNAligaseOS=NialliacirculansOX=1397GN=proSPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	507.729989	1013.44543	-0.28392	-0.00014415	3.7945	0.0019266	3.5106	0.0017824	507.73173093992034	64.512	1.1517	61.787	61.389	62.541	-2.7246	0.027443	0.00061891	NaN	82.305	50	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86339			4118	33446	3179	3189							-0.0607598624151251
DHIKSRLQLY	10	Unmodified	_DHIKSRLQLY_					0	0	0			REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	424.7585144042969	3	424.906816	1271.69862	0.20522	8.7201E-05	2.8455	0.0012091	3.0508	0.0012963	424.9077356832657	46.792	0.92059	46.792	46.587	47.508	0					41	20	4	0	0	0	0.027021	1	3395	3395		10.587	5.9435	1	612480	+		4119	28721	3180	3190	5438	5438					0.07363866208766012
DHKIRCRA	8	Unmodified	_DHKIRCRA_					0	0	0			REV__nc|ENSG00000179299|Q8NE18-3|NSUN7	REV__nc|ENSG00000179299|Q8NE18-3|NSUN7	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.8129577636719	2	499.76926	997.523967	-0.25911	-0.00012949	0.66187	0.00033078	0.40276	0.00020129	499.769606277118	108.51	1.3935	107.31	106.96	108.35	-1.1978					50	26	3	0	0	0	0.028476	1	7722	7722		35.201	10.998	1	65814	+		4120	22118	3181	3191	5439	5439					0.025105875825715884
DHKPINSVL	9	Unmodified	_DHKPINSVL_					0	0	0		ENST00000454528.1_1_X:64576810-64577056:-|nuORF;ENSG00000158122|ENST00000375234|PRXL2C	ENST00000454528.1_1_X:64576810-64577056:-|nuORF	ENST00000454528.1_1_X:64576810-64577056:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	511.78662109375	2	511.785099	1021.55564	-0.47019	-0.00024064	4.1204	0.0021088	3.6502	0.0018681	511.7870120852246	115.96	2.5713	114.92	114.55	117.12	-1.0414					116	51	4	0	0	0	0.21231	1	8659	8659		74.255	5.4682	1	393220			4121	5934	3182	3192	5440	5440					0.04572858817527958
DHKSYYAIN	9	Unmodified	_DHKSYYAIN_					0	0	0		nc|ENSG00000126858|Q8IXI2-4|RHOT1;nc|ENSG00000126858|Q8IXI2|RHOT1;nc|ENSG00000126858|Q8IXI2-5|RHOT1;nc|ENSG00000126858|Q8IXI2-2|RHOT1;ENSG00000126858|ENST00000545287|RHOT1;nc|ENSG00000126858|Q8IXI2-3|RHOT1	nc|ENSG00000126858|Q8IXI2-4|RHOT1	nc|ENSG00000126858|Q8IXI2-4|RHOT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.8284301757812	2	555.764363	1109.51417	-0.27377	-0.00015215	3.0146	0.0016754	2.7408	0.0015233	555.7660098019655	59.498	3.0128	59.498	58.572	61.585	0					123	74	2	0	0	0	0.027462	1	5074	5074		34.173	0	1	665770			4122	3806	3183	3193	5441	5441					-0.03620321941821203
DHKVEQLDK	9	Unmodified	_DHKVEQLDK_					0	0	0		nc|ENSG00000239900|P30566-2|ADSL;ENSG00000239900|ENST00000623063|ADSL	nc|ENSG00000239900|P30566-2|ADSL	nc|ENSG00000239900|P30566-2|ADSL	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.3141479492188	2	556.290745	1110.56694	3.7947	0.0021109	1.3075	0.00072733	5.1021	0.0028383	556.2916668039556	97.588	0.72848	97.588	97.309	98.037	0					38	16	4	0	0	0	0.027462	1	10693	10693		30.318	6.115	1	2311500			4123	9332	3184	3194	5442	5442					0.01607636120979805
DHLKKAEEN	9	Unmodified	_DHLKKAEEN_					0	0	0		nc|ENSG00000077935|Q8NDV3-2|SMC1B;ENSG00000077935|ENST00000357450|SMC1B	nc|ENSG00000077935|Q8NDV3-2|SMC1B	nc|ENSG00000077935|Q8NDV3-2|SMC1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2871704101562	2	542.275095	1082.53564	-0.28546	-0.0001548	-0.75612	-0.00041003	-1.0416	-0.00056483	542.2752098847049	61.942	0.2552	61.942	61.826	62.081	0					9	5	3	0	0	0	0.027433	1	5488	5488		60.972	0	1	126550			4124	1579	3185	3195	5443	5443					-0.0023293691308481357
DHLLLRLKC	9	Unmodified	_DHLLLRLKC_					0	0	0		ENSG00000164430|ENST00000370315|CGAS;nc|ENSG00000164430|Q8N884-2|CGAS	ENSG00000164430|ENST00000370315|CGAS	ENSG00000164430|ENST00000370315|CGAS	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.3141479492188	2	555.826243	1109.63793	2.9709	0.0016513	2.2621	0.0012573	5.233	0.0029086	555.8277289756836	97.392	1.2818	97.392	97.18	98.461	0					47	29	2	0	0	0	0.027462	1	10693	10693		30.504	2.4222	1	813400			4125	6456	3186	3196	5444	5444					0.08750057624820329
DHLNEVVTN	9	Unmodified	_DHLNEVVTN_					0	0	0			REV__ENSG00000161544|ENST00000293230|CYGB	REV__ENSG00000161544|ENST00000293230|CYGB	MULTI-MSMS	OvCa99_classI_Rep5	1	520.7584838867188	2	520.753995	1039.49344	1.8772	0.00097753	4.3356	0.0022578	6.2127	0.0032353	520.7560067422932	121.02	0.5071	121.02	120.78	121.29	0					24	11	3	0	0	0	0.35444	1	13916	13916		56.721	10.749	1	238750	+		4126	20698	3187	3197	5445	5445					-0.024729123214456195
DHMLQYVL	8	Unmodified	_DHMLQYVL_					0	0	0		USH2A|p.Y4273Cfs*19|1|0.36|ENSG00000042781|chr1:215675092-215675093|AT/-|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A;USH2A|p.A4046Dfs*53|1|0.04|ENSG00000042781|chr1:215680306-215680307|-/T|frameshift_variant;USH2A|p.F2516Rfs*28|1|0.25|ENSG00000042781|chr1:215900123-215900124|-/AAGGTTATTGTCACTAAACAACAAGTAAATAAGGGAGGCTCATTTCT|frameshift_variant	USH2A|p.Y4273Cfs*19|1|0.36|ENSG00000042781|chr1:215675092-215675093|AT/-|frameshift_variant	USH2A|p.Y4273Cfs*19|1|0.36|ENSG00000042781|chr1:215675092-215675093|AT/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	509.7576599121094	2	509.754953	1017.49535	0.6379	0.00032517	3.4595	0.0017635	4.0974	0.0020887	509.7566648506735	141.17	0.75482	141.17	140.78	141.54	0					24	14	2	0	0	0	0.73205	1	16493	16493		35.618	5.3006	1	71167			4127	1126	3188	3198	5446	5446					-0.012695748372152593
DHPSVFMQT	9	Unmodified	_DHPSVFMQT_					0	0	0		CORIN|p.R873C|1|0.61|ENSG00000145244|chr4:47603592-47603592|G/A|missense_variant;nc|ENSG00000145244|Q9Y5Q5-2|CORIN;ENSG00000145244|ENST00000273857|CORIN	CORIN|p.R873C|1|0.61|ENSG00000145244|chr4:47603592-47603592|G/A|missense_variant	CORIN|p.R873C|1|0.61|ENSG00000145244|chr4:47603592-47603592|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2623291015625	2	531.239667	1060.46478	1.9344	0.0010276	0.9776	0.00051934	2.912	0.001547	531.2401829149458	91.411	0.20406	91.411	91.255	91.459	0					6	4	2	0	0	0	0.027462	1	9827	9827		14.865	0	1	97889			4128	671	3189	3199	5447	5447					-0.06303353222256192
DHRALRPF	8	Unmodified	_DHRALRPF_					0	0	0			REV__ENSG00000160957|ENST00000617875|RECQL4	REV__ENSG00000160957|ENST00000617875|RECQL4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.794189453125	2	506.277775	1010.541	-1.9838	-0.0010044	-1.4492	-0.0007337	-3.4331	-0.0017381	506.2768567546243	49.071	0.57559	45.929	45.675	46.251	-3.1416					14	10	2	0	0	0	0.028476	1	2722	2722		31.955	0	1	10165	+		4129	16233	3190	3200	5448	5448					0.03614831460026835
DHRGVNNSY	9	Unmodified	_DHRGVNNSY_					0	0	0		ENST00000513594.5_1_4:120438269-120460171:-|nuORF;nc|ENSG00000138735|O76074-2|PDE5A;ENSG00000138735|ENST00000354960|PDE5A	ENST00000513594.5_1_4:120438269-120460171:-|nuORF	ENST00000513594.5_1_4:120438269-120460171:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.8143920898438	2	531.241587	1060.46862	-0.52197	-0.00027729	3.9729	0.0021106	3.451	0.0018333	531.2433673408926	113.21	0.63892	111.76	111.56	112.2	-1.4461					22	12	2	0	0	0	0.027462	1	10475	10475		56.434	25.93	1	34506			4130	4718	3191	3201	5449	5449					-0.059195474042098795
DHRRRGIALIF	11	Unmodified	_DHRRRGIALIF_					0	0	0		ENSG00000138794|ENST00000265164|CASP6	ENSG00000138794|ENST00000265164|CASP6	ENSG00000138794|ENST00000265164|CASP6	MULTI-MSMS	OvCa9_classI_Rep4_	4	451.9320373535156	3	451.933588	1352.77894	-4.6838	-0.0021168	2.7151	0.001227	-1.9687	-0.00088973	451.93466630728255	157.42	2.9259	155.87	154.82	157.75	-1.545					169	85	3	0	0	0	0.72502	1	15578	15578		15.333	1.8252	1	50469			4131	4732	3192	3202	5450	5450					0.11665772322430712
DHSAPPDPTL	10	Unmodified	_DHSAPPDPTL_					0	0	0			REV__ENST00000600328.7_1_19:18376706-18377168:-|nuORF	REV__ENST00000600328.7_1_19:18376706-18377168:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2789306640625	2	525.248546	1048.48254	-0.33314	-0.00017498	-1.2966	-0.00068105	-1.6298	-0.00085603	525.2481436385126	71.453	1.2596	71.453	71.191	72.45	0					53	30	3	0	0	0	0.026802	1	7002	7002		42.396	14.514	1	286760	+		4132	28029	3193	3203	5451	5451					-0.03976314695773908
DHSSFSLTLN	10	Unmodified	_DHSSFSLTLN_					0	0	0		ENST00000345732.8_1_11:60236054-60236291:+|nuORF	ENST00000345732.8_1_11:60236054-60236291:+|nuORF	ENST00000345732.8_1_11:60236054-60236291:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	560.7921752929688	2	560.767103	1119.51965	1.2889	0.00072276	-1.3101	-0.00073466	-0.021222	-1.1901E-05	560.766218021999	64.955	0.29211	61.47	61.212	61.504	-3.4854					7	5	2	0	0	0	0.026994	1	4651	4651		19.104	0	1	67247			4133	10624	3194	3204	5452	5452					-0.03532643149969772
DHWGIERF	8	Unmodified	_DHWGIERF_					0	0	0			REV__ENSG00000175189|ENST00000309668|INHBC	REV__ENSG00000175189|ENST00000309668|INHBC	MULTI-MSMS	OvCa99_classI_Rep5	1	530.2518920898438	2	530.253966	1058.49338	-0.24071	-0.00012764	-3.8749	-0.0020547	-4.1156	-0.0021823	530.2518953365363	30.014	0.45069	30.014	29.735	30.186	0					16	8	3	0	0	0	0.7549	1	1124	1124		24.203	2.2429	1	169460	+		4134	21878	3195	3205	5453	5453					-0.03352867530816184
DHYCNFIEL	9	Unmodified	_DHYCNFIEL_					0	0	0			REV__ENST00000532302.1_1_11:34663985-34668016:+|nuORF	REV__ENST00000532302.1_1_11:34663985-34668016:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	577.2525634765625	2	577.252774	1152.491	0.96355	0.00055621	-0.27818	-0.00016058	0.68538	0.00039564	577.2525263748803	109.41	0.75396	109.41	109.15	109.9	0					25	16	2	0	0	0	0.28934	1	12397	12397		64.207	13.015	1	656820	+		4135	27231	3196	3206	5454	5454					-0.07915084050796395
DHYPIVPFEML	11	Unmodified	_DHYPIVPFEML_					0	0	0			REV__tr|A0A553ST82|A0A553ST82_NIACI3-oxoacyl-ACPreductaseOS=NialliacirculansOX=1397GN=CEQ21_04260PE=3SV=1	REV__tr|A0A553ST82|A0A553ST82_NIACI3-oxoacyl-ACPreductaseOS=NialliacirculansOX=1397GN=CEQ21_04260PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	454.223388671875	3	454.225046	1359.65331	-0.14068	-6.3899E-05	-2.5048	-0.0011377	-2.6454	-0.0012016	454.22386921921304	40.349	0.93855	37.395	37.162	38.101	-2.9541					29	17	2	0	0	0	0.71582	1	1733	1733		24.232	2.4514	1	176560	+		4136	30928	3197	3207	5455	5455					-0.012131203686521985
DHYPIVPFEML	11	Unmodified	_DHYPIVPFEML_					0	0	0			REV__tr|A0A553ST82|A0A553ST82_NIACI3-oxoacyl-ACPreductaseOS=NialliacirculansOX=1397GN=CEQ21_04260PE=3SV=1	REV__tr|A0A553ST82|A0A553ST82_NIACI3-oxoacyl-ACPreductaseOS=NialliacirculansOX=1397GN=CEQ21_04260PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	454.225046	1359.65331	1.3278	0.00060312	-4.0847	-0.0018554	-2.7569	-0.0012522	454.2232570284107	40.037	0.79591	37.327	37.002	37.798	-2.7097	-0.034018	-0.0018922	NaN	24.232	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38714	+		4137	30928	3197	3207							-0.012131203686521985
DHYPIVPFEML	11	Unmodified	_DHYPIVPFEML_					0	0	0			REV__tr|A0A553ST82|A0A553ST82_NIACI3-oxoacyl-ACPreductaseOS=NialliacirculansOX=1397GN=CEQ21_04260PE=3SV=1	REV__tr|A0A553ST82|A0A553ST82_NIACI3-oxoacyl-ACPreductaseOS=NialliacirculansOX=1397GN=CEQ21_04260PE=3SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		3	454.225046	1359.65331	-0.14068	-6.3899E-05	-2.5048	-0.0011377	-2.6454	-0.0012016	454.22386921921304	40.349	0.93855	37.395	37.162	38.101	-2.9541	0.034018	0.00026071	NaN	24.232	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176560	+		4138	30928	3197	3207							-0.012131203686521985
DIAAPTVSET	10	Unmodified	_DIAAPTVSET_					0	0	0			REV__SLC45A4|p.G771A|1|0.06|ENSG00000022567|chr8:141211687-141211687|C/G|missense_variant	REV__SLC45A4|p.G771A|1|0.06|ENSG00000022567|chr8:141211687-141211687|C/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.3092041015625	2	502.250754	1002.48696	2.1433	0.0010765	0.37022	0.00018594	2.5135	0.0012624	502.2508557991125	110.57	0.58025	110.57	110.31	110.89	0					19	12	2	0	0	0	0.02658	1	12576	12576		45.972	18.09	1	258110	+		4139	29369	3198	3208	5456	5456					-0.014188502728529784
DIAAVSWVI	9	Unmodified	_DIAAVSWVI_					0	0	0			REV__tr|A0A553SRZ9|A0A553SRZ9_NIACIFAD-dependentmonooxygenaseOS=NialliacirculansOX=1397GN=CEQ21_02100PE=4SV=1	REV__tr|A0A553SRZ9|A0A553SRZ9_NIACIFAD-dependentmonooxygenaseOS=NialliacirculansOX=1397GN=CEQ21_02100PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	487.26904296875	2	487.271293	972.528032	-0.23253	-0.00011331	-2.9399	-0.0014325	-3.1724	-0.0015458	487.2697419245549	69.368	0.94504	69.368	68.977	69.922	0					42	22	3	0	0	0	0.36502	1	6602	6602		55.504	5.4797	1	1693200	+		4140	30783	3199	3209	5457	5457					0.04066955557277652
DIAAVSWVI	9	Unmodified	_DIAAVSWVI_					0	0	0			REV__tr|A0A553SRZ9|A0A553SRZ9_NIACIFAD-dependentmonooxygenaseOS=NialliacirculansOX=1397GN=CEQ21_02100PE=4SV=1	REV__tr|A0A553SRZ9|A0A553SRZ9_NIACIFAD-dependentmonooxygenaseOS=NialliacirculansOX=1397GN=CEQ21_02100PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	487.271293	972.528032	-0.23253	-0.00011331	-2.9399	-0.0014325	-3.1724	-0.0015458	487.2697419245549	69.368	0.94504	69.368	68.977	69.922	0	0	0	NaN	55.504	42	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1693200	+		4141	30783	3199	3209							0.04066955557277652
DIADFSIII	9	Unmodified	_DIADFSIII_					0	0	0			REV__tr|A0A7D6ZHU6|A0A7D6ZHU6_9CLOTAlkalinephosphatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04320PE=4SV=1	REV__tr|A0A7D6ZHU6|A0A7D6ZHU6_9CLOTAlkalinephosphatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04320PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	503.7780456542969	2	503.776408	1005.53826	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.89	1	145.89	145.39	146.39	0								0	0	0	0.15766	1	17063	17063		63.306	2.3343	1		+		4142	32038	3200	3210	5458	5458					0.03571518491855841
DIAGEAIIII	10	Unmodified	_DIAGEAIIII_					0	0	0			REV__ENST00000466134.5_1_21:45735979-45739299:+|nuORF	REV__ENST00000466134.5_1_21:45735979-45739299:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.7728881835938	2	514.305332	1026.59611	-0.91545	-0.00047082	-1.8863	-0.00097011	-2.8017	-0.0014409	514.3039815473217	70.063	0.4922	66.582	66.442	66.934	-3.4812					16	9	2	0	0	0	0.02661	1	5318	5318		49.442	8.6634	1	22444	+		4143	19762	3201	3211	5459	5459					0.08387780417297108
DIAGEAIIII	10	Unmodified	_DIAGEAIIII_					0	0	0			REV__ENST00000466134.5_1_21:45735979-45739299:+|nuORF	REV__ENST00000466134.5_1_21:45735979-45739299:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.305332	1026.59611	-0.57441	-0.00029542	-2.8065	-0.0014434	-3.3809	-0.0017388	514.3038195430072	69.08	0.49876	66.46	66.266	66.765	-2.6203	-0.060792	-0.00028775	NaN	49.442	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19743	+		4144	19762	3201	3211							0.08387780417297108
DIAIVGLTL	9	Unmodified	_DIAIVGLTL_					0	0	0			REV__nc|ENSG00000143147|Q8N6U8-2|GPR161	REV__nc|ENSG00000143147|Q8N6U8-2|GPR161	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.7983093261719	2	457.781493	913.548434	-0.22347	-0.0001023	0.26791	0.00012265	0.044443	2.0345E-05	457.78155859390205	105.7	1.8923	103.68	103.3	105.19	-2.0161					58	36	2	0	0	0	0.02721	1	9658	9658		44.117	11.304	1	246670	+		4145	19819	3202	3212	5460	5460					0.08820126217085544
DIAIVSYHEQL	11	Unmodified	_DIAIVSYHEQL_					0	0	0			REV__tr|A0A553SMP2|A0A553SMP2_NIACIAlpha/betahydrolaseOS=NialliacirculansOX=1397GN=CEQ21_22845PE=4SV=1	REV__tr|A0A553SMP2|A0A553SMP2_NIACIAlpha/betahydrolaseOS=NialliacirculansOX=1397GN=CEQ21_22845PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	644.3369140625	2	644.33261	1286.65067	2.0123	0.0012966	3.3292	0.0021451	5.3415	0.0034417	644.3347539343018	129.3	2.079	129.3	128.98	131.06	0					136	43	5	0	0	0	0.41398	1	14974	14974		60.118	12.461	1	7840100	+		4146	30354	3203	3213	5461	5461					0.01880747498034907
DIAKKHILI	9	Unmodified	_DIAKKHILI_					0	0	0		nc|ENSG00000119121|Q9BX84-6|TRPM6;nc|ENSG00000119121|Q9BX84-5|TRPM6;nc|ENSG00000119121|Q9BX84-4|TRPM6;nc|ENSG00000119121|Q9BX84-3|TRPM6;nc|ENSG00000119121|Q9BX84-2|TRPM6;ENSG00000119121|ENST00000360774|TRPM6;TRPM6|p.F950Pfs*23|1|0.1|ENSG00000119121|chr9:74785945-74785946|-/GACAGACTGGAGCAAGGTGGCCCAATTTTGAATCCTGG|frameshift_variant	nc|ENSG00000119121|Q9BX84-6|TRPM6	nc|ENSG00000119121|Q9BX84-6|TRPM6	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.8370361328125	2	525.837134	1049.65972	1.5385	0.00080899	-2.229	-0.0011721	-0.6905	-0.00036309	525.8359024560706	137.17	1.0155	135.62	135.23	136.24	-1.5437					36	20	2	0	0	0	0.63422	1	13321	13321		27.882	2.3082	1	47731			4147	3341	3204	3214	5462	5462					0.1368718564503979
DIAKKHILI	9	Unmodified	_DIAKKHILI_					0	0	0		nc|ENSG00000119121|Q9BX84-6|TRPM6;nc|ENSG00000119121|Q9BX84-5|TRPM6;nc|ENSG00000119121|Q9BX84-4|TRPM6;nc|ENSG00000119121|Q9BX84-3|TRPM6;nc|ENSG00000119121|Q9BX84-2|TRPM6;ENSG00000119121|ENST00000360774|TRPM6;TRPM6|p.F950Pfs*23|1|0.1|ENSG00000119121|chr9:74785945-74785946|-/GACAGACTGGAGCAAGGTGGCCCAATTTTGAATCCTGG|frameshift_variant	nc|ENSG00000119121|Q9BX84-6|TRPM6	nc|ENSG00000119121|Q9BX84-6|TRPM6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	525.837134	1049.65972	-1.7146	-0.00090159	0.94545	0.00049715	-0.76914	-0.00040444	525.837572064909	136.68	0.92981	135.6	135.31	136.24	-1.0858	-0.012422	0.0018016	NaN	27.882	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22971			4148	3341	3204	3214							0.1368718564503979
DIALHLISVS	10	Unmodified	_DIALHLISVS_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.6004028320312	2	534.308406	1066.60226	-0.34805	-0.00018597	0.77797	0.00041568	0.42992	0.00022971	534.3087114399232	104.76	1.116	104.76	104.11	105.22	0					34	25	2	0	0	0	0.026665	1	11712	11712		42.396	0	1	685040			4149	7566	3205	3215	5463	5463					0.07162298648813703
DIANKALEFI	10	Unmodified	_DIANKALEFI_					0	0	0		tr|A0A7D7A631|A0A7D7A631_9CLOTDeoR/GlpRtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08675PE=4SV=1	tr|A0A7D7A631|A0A7D7A631_9CLOTDeoR/GlpRtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08675PE=4SV=1	tr|A0A7D7A631|A0A7D7A631_9CLOTDeoR/GlpRtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08675PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3136596679688	2	567.313689	1132.61282	-0.21045	-0.00011939	0.050668	2.8744E-05	-0.15978	-9.0647E-05	567.3136020936813	114.37	1.1348	114.25	113.96	115.1	-0.11777					58	22	5	0	0	0	0.42082	1	10877	10877		65.465	0	1	241620			4150	36182	3206	3216	5464	5464					0.05182281303223135
DIANKALEFI	10	Unmodified	_DIANKALEFI_					0	0	0		tr|A0A7D7A631|A0A7D7A631_9CLOTDeoR/GlpRtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08675PE=4SV=1	tr|A0A7D7A631|A0A7D7A631_9CLOTDeoR/GlpRtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08675PE=4SV=1	tr|A0A7D7A631|A0A7D7A631_9CLOTDeoR/GlpRtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08675PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3126831054688	2	567.313689	1132.61282	-0.46215	-0.00026219	-0.055095	-3.1256E-05	-0.51725	-0.00029344	567.3133830072844	115.23	1.5294	114.18	113.85	115.38	-1.055					59	30	3	0	0	0	0.42082	1	8557	8557		65.465	0	1	254740			4151	36182	3206	3216	5465	5465					0.05182281303223135
DIAQDPAQKD	10	Unmodified	_DIAQDPAQKD_					0	0	0		nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	MULTI-MSMS	OvCa99_classI_Rep5	1	550.76708984375	2	550.76456	1099.51457	-0.36149	-0.0001991	0.72744	0.00040065	0.36595	0.00020155	550.7646397711776	71.22	0.51746	71.22	71.031	71.548	0					32	12	4	0	0	0	0.44431	1	6864	6864		62.107	3.3255	1	1892900			4152	6377	3207	3217	5466	5466					-0.031209470126214
DIAYNLSLI	9	Unmodified	_DIAYNLSLI_					0	0	0		ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	MULTI-MSMS	OvCa99_classI_Rep5	1	511.2835693359375	2	511.281857	1020.54916	1.8901	0.00096636	0.59846	0.00030598	2.4885	0.0012723	511.28192287336384	134.59	1.0213	134.59	134.24	135.27	0					42	22	3	0	0	0	0.2077	1	15668	15668		75.043	0.78827	1	550990			4153	3339	3208	3218	5467	5467					0.03970920866152028
DICNFPPKIAH	11	Unmodified	_DICNFPPKIAH_					0	0	0		ENSG00000123838|ENST00000367070|C4BPA	ENSG00000123838|ENST00000367070|C4BPA	ENSG00000123838|ENST00000367070|C4BPA	MULTI-SECPEP	OvCa99_classI_Rep5	1	628.2900390625	2	627.818615	1253.62268	0.95291	0.00059826	-1.1591	-0.0007277	-0.20618	-0.00012944	627.8178549464287	132.37	0.56606	132.37	132.13	132.7	0					27	11	3	0	0	0	0.025457	1	15364	15364		29.17	10.908	1	227980			4154	3615	3209	3219	5468	5468					0.0060114603695637925
DICRLFLAKK	10	Unmodified	_DICRLFLAKK_					0	0	0		ENSG00000114124|ENST00000682958|GRK7	ENSG00000114124|ENST00000682958|GRK7	ENSG00000114124|ENST00000682958|GRK7	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.928955078125	3	402.905759	1205.69545	0.77811	0.00031351	1.9338	0.00077913	2.7119	0.0010926	402.90624877534873	51.85	0.12403	51.85	51.747	51.871	0					4	2	2	0	0	0	0.026916	1	4024	4024		36.318	3.5671	1	48424			4155	3013	3210	3220	5469	5469					0.10082899830354108
DIDECVLLK	9	Unmodified	_DIDECVLLK_					0	0	0			REV__ENSG00000166147|ENST00000316623|FBN1	REV__ENSG00000166147|ENST00000316623|FBN1	MULTI-MSMS	OvCa9_classI_Rep3	3	524.2718505859375	2	524.273175	1046.5318	0.85689	0.00044924	-4.4765	-0.0023469	-3.6196	-0.0018977	524.2706948277186	120.46	3.5918	119.43	118.68	122.27	-1.0271					167	69	5	0	0	0	0.24951	1	9241	9241		68.787	0	1	1392700	+		4156	21161	3211	3221	5470	5470					0.01039257268826077
DIDESGKQIT	10	Unmodified	_DIDESGKQIT_					0	0	0			REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B	REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.3020629882812	2	553.272218	1104.52988	-0.30746	-0.00017011	-0.97712	-0.00054061	-1.2846	-0.00071073	553.2714660066952	102.36	0.44471	101.68	101.49	101.93	-0.68459					14	8	2	0	0	0	0.026602	1	9407	9407		65.465	8.7443	1	11243	+		4157	17017	3212	3222	5471	5471					-0.018200802154069606
DIDKIIYSN	9	Unmodified	_DIDKIIYSN_					0	0	0			REV__tr|A0A7D7A277|A0A7D7A277_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_18620PE=3SV=1	REV__tr|A0A7D7A277|A0A7D7A277_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_18620PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.7647094726562	2	540.782222	1079.54989	-0.56552	-0.00030583	0.55848	0.00030201	-0.0070466	-3.8107E-06	540.7810159671395	78.581	0.32492	75.83	75.666	75.991	-2.7514					8	6	2	0	0	0	0.027462	1	6332	6332		14.865	3.9993	1	32224	+		4158	32525	3213	3223	5472	5472					0.013297155152031337
DIDPLKMLEL	10	Unmodified	_DIDPLKMLEL_					0	0	0		tr|A0A7D6ZW43|A0A7D6ZW43_9CLOTSeptumsite-determiningproteinMinDOS=ClostridiumintestinaleOX=36845GN=minDPE=3SV=1	tr|A0A7D6ZW43|A0A7D6ZW43_9CLOTSeptumsite-determiningproteinMinDOS=ClostridiumintestinaleOX=36845GN=minDPE=3SV=1	tr|A0A7D6ZW43|A0A7D6ZW43_9CLOTSeptumsite-determiningproteinMinDOS=ClostridiumintestinaleOX=36845GN=minDPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.2767944335938	2	593.823032	1185.63151	-0.93403	-0.00055465	-0.6286	-0.00037328	-1.5626	-0.00092793	594.3229485613119	65.824	0.43727	65.824	65.546	65.984	0					14	10	2	0	0	0	0.026867	1	6079	6079		42.864	23.504	1	339200			4159	35824	3214	3224	5473	5473					0.04612074882788875
DIEAILRIT	9	Unmodified	_DIEAILRIT_					0	0	0		tr|A0A7D6VRL9|A0A7D6VRL9_9CLOTPutativecompetence-damageinducibleproteinOS=ClostridiumintestinaleOX=36845GN=cinAPE=3SV=1	tr|A0A7D6VRL9|A0A7D6VRL9_9CLOTPutativecompetence-damageinducibleproteinOS=ClostridiumintestinaleOX=36845GN=cinAPE=3SV=1	tr|A0A7D6VRL9|A0A7D6VRL9_9CLOTPutativecompetence-damageinducibleproteinOS=ClostridiumintestinaleOX=36845GN=cinAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.842529296875	2	522.308406	1042.60226	2.5306	0.0013218	0.33372	0.00017431	2.8643	0.0014961	522.3082783488359	89.87	0.54381	89.87	89.6	90.143	0					17	12	2	0	0	0	0.027462	1	9646	9646		38.806	1.647	1	383390			4160	34941	3215	3225	5474	5474					0.0826629864880033
DIEGIIQNL	9	Unmodified	_DIEGIIQNL_					0	0	0			REV__tr|A0A7D6ZHZ7|A0A7D6ZHZ7_9CLOTHemeNO-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01900PE=4SV=1	REV__tr|A0A7D6ZHZ7|A0A7D6ZHZ7_9CLOTHemeNO-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01900PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.2931213378906	2	507.776939	1013.53933	0.41605	0.00021126	-2.8599	-0.0014522	-2.4438	-0.0012409	508.2771150644897	110.96	0.57832	109.36	108.91	109.49	-1.6011					15	10	2	0	0	0	0.027295	1	10179	10179		54.776	4.7518	1	36076	+		4161	32042	3216	3226	5475	5475					0.033097328607595955
DIEKRNNSL	9	Unmodified	_DIEKRNNSL_					0	0	0		nc|ENSG00000067208|O60447|EVI5;nc|ENSG00000067208|O60447-2|EVI5;ENSG00000067208|ENST00000684568|EVI5;ENST00000492613.1_1_1:93091344-93142738:-|nuORF	nc|ENSG00000067208|O60447|EVI5	nc|ENSG00000067208|O60447|EVI5	MULTI-MSMS	OvCa9_classI_Rep3	3	544.7862548828125	2	544.78837	1087.56219	-0.1523	-8.2972E-05	3.6104	0.0019669	3.4581	0.0018839	544.7903183327148	78.972	1.4451	76.632	76.264	77.709	-2.3399					74	28	4	0	0	0	0.1944	1	4239	4239		77.318	4.4383	1	860660			4162	1371	3217	3227	5476	5476					0.021907519782416784
DIELENVL	8	Unmodified	_DIELENVL_					0	0	0		ENSG00000068323|ENST00000315869|TFE3;nc|ENSG00000068323|P19532-2|TFE3	ENSG00000068323|ENST00000315869|TFE3	ENSG00000068323|ENST00000315869|TFE3	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.75439453125	2	472.75039	943.486227	1.0184	0.00048145	4.1716	0.0019721	5.19	0.0024536	472.75234742263694	64.577	1.9384	61.091	60.24	62.179	-3.4854					97	39	4	0	0	0	0.65062	1	4621	4621		53.351	0.41475	1	3821600			4163	1389	3218	3228	5477	5477					0.012223550780959158
DIEQQALPR	9	Unmodified	_DIEQQALPR_					0	0	0		chr1:32744538-32767787|188|26.4|0.56|5.55|+|0|TE_info:MIR3,MIR3_dup1852,MIR,SINE,donor,-,32744506,32744538|None,KIAA1522|1	chr1:32744538-32767787|188|26.4|0.56|5.55|+|0|TE_info:MIR3,MIR3_dup1852,MIR,SINE,donor,-,32744506,32744538|None,KIAA1522|1	chr1:32744538-32767787|188|26.4|0.56|5.55|+|0|TE_info:MIR3,MIR3_dup1852,MIR,SINE,donor,-,32744506,32744538|None,KIAA1522|1	MULTI-MSMS	OvCa99_classI_Rep5	1	535.2891235351562	2	535.285463	1068.55637	-0.58509	-0.00031319	1.7287	0.00092537	1.1437	0.00061218	535.2862693743633	25.27	0.45164	25.27	25.092	25.544	0					15	8	3	0	0	0	0.51865	1	550	550		40.778	5.1599	1	100740			4164	257	3219	3229	5478	5478					0.02483653466561009
DIERAMNLI	9	Unmodified	_DIERAMNLI_					0	0	0			REV__nc|ENSG00000172830|Q8TE77-2|SSH3	REV__nc|ENSG00000172830|Q8TE77-2|SSH3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.819580078125	2	537.784241	1073.55393	0.033335	1.7927E-05	0.86542	0.00046541	0.89876	0.00048334	537.7838240824422	68.249	0.24342	64.759	64.574	64.818	-3.4902					5	4	2	0	0	0	0.027462	1	5045	5045		30.504	0	1	11774	+		4165	21729	3220	3230	5479	5479					0.020094817372637408
DIESRLQK	8	Unmodified	_DIESRLQK_					0	0	0		tr|A0A7D6VSZ7|A0A7D6VSZ7_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11170PE=4SV=1	tr|A0A7D6VSZ7|A0A7D6VSZ7_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11170PE=4SV=1	tr|A0A7D6VSZ7|A0A7D6VSZ7_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11170PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.3120422363281	2	494.774731	987.534909	-1.222	-0.00060464	-0.88813	-0.00043943	-2.1102	-0.0010441	494.7741199711103	64.188	0.48687	64.188	63.974	64.461	0					17	11	2	0	0	0	0.028476	1	5824	5824		51.335	6.8044	1	389650			4166	35071	3221	3231	5480	5480					0.040642684378553895
DIESRLQK	8	Unmodified	_DIESRLQK_					0	0	0		tr|A0A7D6VSZ7|A0A7D6VSZ7_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11170PE=4SV=1	tr|A0A7D6VSZ7|A0A7D6VSZ7_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11170PE=4SV=1	tr|A0A7D6VSZ7|A0A7D6VSZ7_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11170PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	494.774731	987.534909	0.45705	0.00022614	0.91807	0.00045424	1.3751	0.00068038	494.77572083495676	66.735	0.4965	64.039	63.865	64.362	-2.6958	-0.037715	0.0020908	NaN	40.778	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15858			4167	35071	3221	3231							0.040642684378553895
DIETQLPAL	9	Unmodified	_DIETQLPAL_					0	0	0		nc|ENSG00000162946|Q9NRI5-9|DISC1;nc|ENSG00000162946|Q9NRI5-3|DISC1;nc|ENSG00000162946|Q9NRI5-8|DISC1;nc|ENSG00000162946|Q9NRI5-5|DISC1;ENST00000422590.6_1_1:231829618-232144897:+|nuORF;nc|ENSG00000162946|Q9NRI5-2|DISC1;ENSG00000162946|ENST00000439617|DISC1	nc|ENSG00000162946|Q9NRI5-9|DISC1	nc|ENSG00000162946|Q9NRI5-9|DISC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.7903137207031	2	500.27149	998.528426	0.93332	0.00046691	1.1388	0.00056973	2.0722	0.0010366	500.77409976121714	154.39	0.14784	154.39	154.32	154.47	0					4	2	2	0	0	0	0.027462	1	18093	18093		14.865	0.72775	1	6180.3			4168	6251	3222	3232	5481	5481					0.029103304864634083
DIETYDTNEA	10	Unmodified	_DIETYDTNEA_					0	0	0			REV__nc|ENSG00000172869|Q9Y485|DMXL1	REV__nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.8006591796875	2	585.74349	1169.47243	1.9364	0.0011342	1.122	0.0006572	3.0584	0.0017914	585.7441248191967	100.38	0.58415	100.38	100.11	100.69	0					36	13	4	0	0	0	0.026931	1	11149	11149		23.523	0	1	3896500	+		4169	21731	3223	3233	5482	5482					-0.10552967211651776
DIFDKALHS	9	Unmodified	_DIFDKALHS_					0	0	0			REV__ENSG00000147613|ENST00000276616|PSKH2	REV__ENSG00000147613|ENST00000276616|PSKH2	MULTI-MSMS	OvCa9_classI_Rep2	2	523.2695922851562	2	523.269281	1044.52401	0.43587	0.00022808	-0.76422	-0.00039989	-0.32835	-0.00017182	523.2687191280446	110.76	1.4312	110.62	110.19	111.62	-0.13961					94	28	4	0	0	0	0.51865	1	10482	10482		40.778	1.972	1	245360	+		4170	20076	3224	3234	5483	5483					0.0035286606357658457
DIFDKALHS	9	Unmodified	_DIFDKALHS_					0	0	0			REV__ENSG00000147613|ENST00000276616|PSKH2	REV__ENSG00000147613|ENST00000276616|PSKH2	MULTI-MSMS	OvCa9_classI_Rep3	3	523.2686767578125	2	523.269281	1044.52401	1.3489	0.00070584	-1.6895	-0.00088407	-0.34061	-0.00017823	523.2682579368221	111.72	1.4316	110.62	110.2	111.63	-1.1038					79	28	4	0	0	0	0.33652	1	8124	8124		58.782	9.3404	1	588020	+		4171	20076	3224	3234	5484	5484					0.0035286606357658457
DIFFFSLD	8	Unmodified	_DIFFFSLD_					0	0	0		ENST00000377102.5_1_13:80913253-80913610:-|nuORF	ENST00000377102.5_1_13:80913253-80913610:-|nuORF	ENST00000377102.5_1_13:80913253-80913610:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.2827453613281	2	502.242201	1002.46985	2.08	0.0010447	-0.39936	-0.00020057	1.6807	0.00084411	502.24187681544856	137.04	0.91562	137.04	136.77	137.69	0					42	18	4	0	0	0	0.028476	1	16040	16040		25.45	0	1	692550			4172	11085	3225	3235	5485	5485					-0.03128726087982159
DIFKFVEKD	9	Unmodified	_DIFKFVEKD_					0	0	0		tr|A0A553SJI9|A0A553SJI9_NIACI3'-5'exonucleaseKapDOS=NialliacirculansOX=1397GN=kapDPE=4SV=1	tr|A0A553SJI9|A0A553SJI9_NIACI3'-5'exonucleaseKapDOS=NialliacirculansOX=1397GN=kapDPE=4SV=1	tr|A0A553SJI9|A0A553SJI9_NIACI3'-5'exonucleaseKapDOS=NialliacirculansOX=1397GN=kapDPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.3153686523438	2	570.800414	1139.58628	1.8631	0.0010635	1.1191	0.00063875	2.9822	0.0017022	570.8007013871091	120.2	0.36785	120.2	119.96	120.32	0					20	8	4	0	0	0	0.027462	1	13824	13824		40.778	13.982	1	541620			4173	33509	3226	3236	5486	5486					0.022065924119033298
DIFWLQEL	8	Unmodified	_DIFWLQEL_					0	0	0		ENSG00000102221|ENST00000614628|JADE3	ENSG00000102221|ENST00000614628|JADE3	ENSG00000102221|ENST00000614628|JADE3	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.7977294921875	2	532.276575	1062.5386	1.3686	0.00072848	0.27874	0.00014837	1.6474	0.00087685	532.2767316089021	146.86	0.83136	146.86	146.43	147.26	0					31	16	3	0	0	0	0.028476	1	17167	17167		76.774	5.4784	1	74670			4174	2229	3227	3237	5487	5487					0.009829382117231944
DIGERREPD	9	Unmodified	_DIGERREPD_					0	0	0		nc|ENSG00000187144|Q7Z572-2|SPATA21;ENSG00000187144|ENST00000335496|SPATA21	nc|ENSG00000187144|Q7Z572-2|SPATA21	nc|ENSG00000187144|Q7Z572-2|SPATA21	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.3091430664062	2	543.762352	1085.51015	-0.55305	-0.00030073	1.2554	0.00068266	0.70239	0.00038193	543.7628605147244	42.547	2.5978	42.547	40.795	43.393	0					92	59	2	0	0	0	0.027462	1	2772	2772		10.866	0	1	93735			4175	8390	3228	3238	5488	5488					-0.029184114355075508
DIGIWYGIL	9	Unmodified	_DIGIWYGIL_					0	0	0		ENSG00000151572|ENST00000392977|ANO4;nc|ENSG00000151572|Q32M45-2|ANO4;nc|ENSG00000151572|Q32M45-3|ANO4	ENSG00000151572|ENST00000392977|ANO4	ENSG00000151572|ENST00000392977|ANO4	MULTI-MSMS	OvCa99_classI_Rep5	1	525.2865600585938	2	525.286943	1048.55933	1.4972	0.00078649	-3.1763	-0.0016684	-1.679	-0.00088196	525.2852274726129	92.094	0.75928	92.094	91.668	92.428	0					56	17	5	0	0	0	0.22913	1	9946	9946		71.378	2.8932	1	4961200			4176	5564	3229	3239	5489	5489					0.03699528591369017
DIGKLLDTF	9	Unmodified	_DIGKLLDTF_					0	0	0			REV__tr|A0A7D6ZV17|A0A7D6ZV17_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12495PE=4SV=1	REV__tr|A0A7D6ZV17|A0A7D6ZV17_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12495PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	510.29815673828125	2	511.281857	1020.54916	-0.64802	-0.00033132	-0.71818	-0.00036719	-1.3662	-0.00069852	511.28120094551923	100.37	1.1276	98.77	98.423	99.551	-1.6053					83	22	6	0	0	0	0.027462	1	6894	6894		32.812	0	1	546300	+		4177	32235	3230	3240	5490	5490					0.03970920866140659
DIGLLYIRLST	11	Unmodified	_DIGLLYIRLST_					0	0	0		TECTA|p.N1856Ifs*57|1|0.07|ENSG00000109927|chr11:121166757-121166757|G/-|frameshift_variant;ENSG00000109927|ENST00000392793|TECTA;TECTA|p.L1126Qfs*26|1|0.03|ENSG00000109927|chr11:121137853-121137854|-/TCAGACAACA|frameshift_variant;TECTA|p.I1125Ffs*27|1|0.06|ENSG00000109927|chr11:121137851-121137852|-/TTTCAGACAA|frameshift_variant;TECTA|p.T1211Sfs*9|1|0.04|ENSG00000109927|chr11:121145640-121145641|-/GAGTGGCATTTCAGACAGAGGG|frameshift_variant	TECTA|p.N1856Ifs*57|1|0.07|ENSG00000109927|chr11:121166757-121166757|G/-|frameshift_variant	TECTA|p.N1856Ifs*57|1|0.07|ENSG00000109927|chr11:121166757-121166757|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	633.02099609375	2	632.368995	1262.72344	-0.04176	-2.6408E-05	4.3907	0.0027765	4.3489	0.0027501	632.3717255290557	20.554	1.3185	19.215	18.851	20.169	-1.3386					45	26	3	0	0	0	0.026089	1	99	99		16.717	0	1	45460			4178	2743	3231	3241	5491	5491					0.1025850129144601
DIGPLGKF	8	Unmodified	_DIGPLGKF_					0	0	0			REV__ENSG00000198597|ENST00000355537|ZNF536	REV__ENSG00000198597|ENST00000355537|ZNF536	MULTI-SECPEP	OvCa9_classI_Rep4_	4	423.9226989746094	2	423.739628	845.464704	-1.1397	-0.00048293	-1.688	-0.00071528	-2.8277	-0.0011982	423.73850847148145	44.256	0.40373	41.249	40.989	41.393	-3.0074					10	7	2	0	0	0	0.028476	1	2183	2183		35.201	16.876	1	10029	+		4179	23033	3232	3242	5492	5492					0.03579014840045147
DIGPWVTL	8	Unmodified	_DIGPWVTL_					0	0	0		ENST00000483826.1_1_19:12401972-12405542:-|nuORF;nc|ENSG00000197857|P15621-3|ZNF44;nc|ENSG00000197857|P15621|ZNF44	ENST00000483826.1_1_19:12401972-12405542:-|nuORF	ENST00000483826.1_1_19:12401972-12405542:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	450.2680358886719	2	450.744911	899.475269	2.3001	0.0010368	2.1144	0.00095304	4.4145	0.0019898	450.7454798988385	69.978	2.2845	67.407	66.615	68.899	-2.5707					80	44	3	0	0	0	0.028476	1	5740	5740		65.803	15.779	1	75198			4180	12591	3233	3243	5493	5493					0.021509974944933674
DIGPWVTL	8	Unmodified	_DIGPWVTL_					0	0	0		ENST00000483826.1_1_19:12401972-12405542:-|nuORF;nc|ENSG00000197857|P15621-3|ZNF44;nc|ENSG00000197857|P15621|ZNF44	ENST00000483826.1_1_19:12401972-12405542:-|nuORF	ENST00000483826.1_1_19:12401972-12405542:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	450.744911	899.475269	-0.068568	-3.0907E-05	4.1662	0.0018779	4.0976	0.001847	450.7467283874718	70.7	1.458	67.219	66.787	68.245	-3.4812	-0.094119	0.00079967	NaN	65.803	55	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	311100			4181	12591	3233	3243							0.021509974944933674
DIGVKRTVGT	10	Unmodified	_DIGVKRTVGT_					0	0	0		ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3031616210938	2	523.303655	1044.59276	-2.1228	-0.0011108	2.0352	0.001065	-0.087543	-4.5811E-05	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.5675	1	11441	11441		45.972	8.1607	1	183010			4182	3275	3234	3244	5494	5494					0.07224530363282611
DIHAIVKP	8	Unmodified	_DIHAIVKP_					0	0	0			REV__tr|A0A553SP79|A0A553SP79_NIACICoenzymeAbiosynthesisbifunctionalproteinCoaBCOS=NialliacirculansOX=1397GN=coaBCPE=3SV=1	REV__tr|A0A553SP79|A0A553SP79_NIACICoenzymeAbiosynthesisbifunctionalproteinCoaBCOS=NialliacirculansOX=1397GN=coaBCPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	445.7781982421875	2	446.766178	891.517802	2.9312	0.0013096	-1.6739	-0.00074782	1.2574	0.00056175	446.76517108350043	95.253	0.33546	95.253	94.949	95.284	0					11	7	2	0	0	0	0.028476	1	10394	10394		65.803	41.6	1	104220	+		4183	30508	3235	3245	5495	5495					0.06770392622706822
DIHAYKNIAS	10	Unmodified	_DIHAYKNIAS_					0	0	0			REV__tr|A0A7D6VSE3|A0A7D6VSE3_9CLOTV-typeATPsynthasesubunitEOS=ClostridiumintestinaleOX=36845GN=HZF06_06145PE=3SV=1	REV__tr|A0A7D6VSE3|A0A7D6VSE3_9CLOTV-typeATPsynthasesubunitEOS=ClostridiumintestinaleOX=36845GN=HZF06_06145PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	566.8173217773438	2	566.293288	1130.57202	-0.060355	-3.4179E-05	2.8655	0.0016227	2.8051	0.0015885	566.295543957999	86.342	1.0401	84.852	84.642	85.682	-1.4906					28	19	2	0	0	0	0.026956	1	7549	7549		26.693	0	1	18102	+		4184	31494	3236	3246	5496	5496					0.011959399836086959
DIHGPTDILY	10	Unmodified	_DIHGPTDILY_					0	0	0			REV__tr|A0A7D6VP39|A0A7D6VP39_9CLOTTetM/TetW/TetO/TetSfamilytetracyclineresistanceribosomalprotectionproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15735PE=4SV=1	REV__tr|A0A7D6VP39|A0A7D6VP39_9CLOTTetM/TetW/TetO/TetSfamilytetracyclineresistanceribosomalprotectionproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15735PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	572.2845458984375	2	572.287671	1142.56079	-1.4852	-0.00084994	-1.4521	-0.00083101	-2.9373	-0.001681	572.2866735153697	32.713	1.6873	30.003	29.53	31.218	-2.7097					70	33	3	0	0	0	0.71192	1	1152	1152		29.15	2.4566	1	392360	+		4185	31227	3237	3247	5497	5497					-0.004788821105194074
DIHLKNPIL	9	Unmodified	_DIHLKNPIL_					0	0	0		tr|A0A553STX8|A0A553STX8_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05930PE=4SV=1	tr|A0A553STX8|A0A553STX8_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05930PE=4SV=1	tr|A0A553STX8|A0A553STX8_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05930PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	532.7833862304688	2	531.818941	1061.62333	-1.196	-0.00063604	0.69963	0.00037208	-0.49634	-0.00026396	531.8191918572351	73.533	1.103	71.133	70.844	71.947	-2.3999					40	20	3	0	0	0	0.027462	1	5957	5957		45.952	1.8352	1	82268			4186	34548	3238	3248	5498	5498					0.09498308748334239
DIHLKNPIL	9	Unmodified	_DIHLKNPIL_					0	0	0		tr|A0A553STX8|A0A553STX8_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05930PE=4SV=1	tr|A0A553STX8|A0A553STX8_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05930PE=4SV=1	tr|A0A553STX8|A0A553STX8_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05930PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	531.818941	1061.62333	0.077157	4.1034E-05	-0.0031571	-1.679E-06	0.074	3.9355E-05	531.8188934009386	73.674	1.6344	71.187	70.579	72.214	-2.4873	0.02705	-0.0004893	NaN	45.952	54	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111580			4187	34548	3238	3248							0.09498308748334239
DIIARSALDI	10	Unmodified	_DIIARSALDI_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.8093872070312	2	543.811313	1085.60807	-0.0069393	-3.7737E-06	-0.4449	-0.00024194	-0.45184	-0.00024572	543.8109541923094	114.68	1.5733	113.28	112.99	114.56	-1.3977					68	30	3	0	0	0	0.20836	1	10677	10677		93.143	7.9824	1	191730	+		4188	28942	3239	3249	5499	5499					0.06869397160471635
DIIASHLPIK	10	Unmodified	_DIIASHLPIK_					0	0	0		tr|A0A553SKA6|A0A553SKA6_NIACILonproteaseOS=NialliacirculansOX=1397GN=lonPE=2SV=1	tr|A0A553SKA6|A0A553SKA6_NIACILonproteaseOS=NialliacirculansOX=1397GN=lonPE=2SV=1	tr|A0A553SKA6|A0A553SKA6_NIACILonproteaseOS=NialliacirculansOX=1397GN=lonPE=2SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	553.82861328125	2	553.832049	1105.64954	-2.2198	-0.0012294	-1.4062	-0.0007788	-3.626	-0.0020082	553.8311075714116	139.08	3.9663	138.02	135.98	139.95	-1.0595					202	80	4	0	0	0	0.72319	1	11319	11319		27.882	2.4321	1	74733			4189	33595	3240	3250	5500	5500					0.10094577919812764
DIIIFNDEL	9	Unmodified	_DIIIFNDEL_					0	0	0		tr|A0A553SN66|A0A553SN66_NIACIGTPaseHflXOS=NialliacirculansOX=1397GN=hflXPE=3SV=1	tr|A0A553SN66|A0A553SN66_NIACIGTPaseHflXOS=NialliacirculansOX=1397GN=hflXPE=3SV=1	tr|A0A553SN66|A0A553SN66_NIACIGTPaseHflXOS=NialliacirculansOX=1397GN=hflXPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	546.2846069335938	2	546.284597	1090.55464	-0.68498	-0.00037419	-0.020203	-1.1037E-05	-0.70518	-0.00038523	546.2843803119416	133.15	1.178	132.02	131.73	132.91	-1.1249					53	23	3	0	0	0	0.21231	1	10680	10680		74.255	0	1	108250			4190	33905	3241	3251	5501	5501					0.012985996579345738
DIIIIKGT	8	Unmodified	_DIIIIKGT_					0	0	0			REV__tr|A0A553SH69|A0A553SH69_NIACIN-acetylmuramoyl-L-alanineamidaseCwlDOS=NialliacirculansOX=1397GN=cwlDPE=4SV=1	REV__tr|A0A553SH69|A0A553SH69_NIACIN-acetylmuramoyl-L-alanineamidaseCwlDOS=NialliacirculansOX=1397GN=cwlDPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.7746887207031	2	436.776211	871.537869	-0.44072	-0.00019249	-2.8293	-0.0012358	-3.27	-0.0014283	436.7748691455194	144.87	2.2884	143.44	143.04	145.33	-1.4357					111	43	5	0	0	0	0.6962	1	14272	14272		44.117	3.5442	1	1417100	+		4191	29777	3242	3252	5502	5502					0.09696143562666748
DIIKKLNTL	9	Unmodified	_DIIKKLNTL_					0	0	0			REV__tr|A0A7D6ZGV9|A0A7D6ZGV9_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00330PE=4SV=1	REV__tr|A0A7D6ZGV9|A0A7D6ZGV9_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00330PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.7708129882812	2	529.334424	1056.6543	-0.84626	-0.00044795	0.099203	5.2511E-05	-0.74706	-0.00039544	529.334323607894	64.015	0.77773	60.54	60.251	61.028	-3.475					23	15	2	0	0	0	0.027462	1	4587	4587		19.104	0	1	45433	+		4192	32009	3243	3253	5503	5503					0.12823462062578983
DIIKKSIEN	9	Unmodified	_DIIKKSIEN_					0	0	0		tr|A0A7D7A643|A0A7D7A643_9CLOTWYLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08875PE=4SV=1	tr|A0A7D7A643|A0A7D7A643_9CLOTWYLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08875PE=4SV=1	tr|A0A7D7A643|A0A7D7A643_9CLOTWYLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08875PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.3333740234375	2	530.305864	1058.59717	-1.4035	-0.00074429	2.8192	0.0014951	1.4157	0.00075077	530.3071738035482	57.253	1.4407	54.461	53.832	55.273	-2.792					72	28	3	0	0	0	0.027425	1	4097	4097		72.879	19.79	1	133410			4193	36185	3244	3254	5504	5504					0.07021994786191499
DIIKQRIR	8	Unmodified	_DIIKQRIR_					0	0	0		ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	MULTI-MSMS	OvCa99_classI_Rep5	1	521.3321533203125	2	521.330008	1040.64546	-0.33901	-0.00017674	0.10111	5.2713E-05	-0.2379	-0.00012403	521.3299646538899	62.402	1.1352	62.402	62.122	63.257	0					50	27	3	0	0	0	0.65062	1	5545	5545		53.351	2.016	1	6829400			4194	3647	3245	3255	5505	5505					0.12676533216745156
DIILGWIPAD	10	Unmodified	_DIILGWIPAD_					0	0	0			REV__tr|A0A553SIG9|A0A553SIG9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_14835PE=3SV=1	REV__tr|A0A553SIG9|A0A553SIG9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_14835PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.810546875	2	556.802957	1111.59136	-0.3032	-0.00016882	1.944	0.0010825	1.6409	0.00091363	557.3050212880113	100.89	0.66397	98.619	98.083	98.746	-2.2665					25	12	4	0	0	0	0.026802	1	9048	9048		42.396	8.8806	1	67262	+		4195	29893	3246	3256	5506	5506					0.040028962745282115
DIILGWIPAD	10	Unmodified	_DIILGWIPAD_					0	0	0			REV__tr|A0A553SIG9|A0A553SIG9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_14835PE=3SV=1	REV__tr|A0A553SIG9|A0A553SIG9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_14835PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	556.802957	1111.59136	-1.0863	-0.00060485	0.98114	0.0005463	-0.10515	-5.8546E-05	556.8031459956215	100.38	0.52496	98.773	98.518	99.043	-1.6053	0.077092	-0.00028347	NaN	42.396	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58198	+		4196	29893	3246	3256							0.040028962745282115
DIINFRRTL	9	Unmodified	_DIINFRRTL_					0	0	0		TOPORS|p.S774Rfs*14|1|0.06|ENSG00000197579|chr9:32542203-32542203|A/-|frameshift_variant;nc|ENSG00000197579|Q9NS56-2|TOPORS;ENSG00000197579|ENST00000360538|TOPORS	TOPORS|p.S774Rfs*14|1|0.06|ENSG00000197579|chr9:32542203-32542203|A/-|frameshift_variant;nc|ENSG00000197579|Q9NS56-2|TOPORS	TOPORS|p.S774Rfs*14|1|0.06|ENSG00000197579|chr9:32542203-32542203|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.299560546875	2	574.332747	1146.65094	-0.81314	-0.00046701	-3.0274	-0.0017387	-3.8405	-0.0022057	574.8320194893706	98.62	0.31224	96.935	96.801	97.113	-1.685					6	5	2	0	0	0	0.027418	1	6598	6598		75.043	14.071	1	4963.7			4197	32975;8725	3247	3257	5507	5507					0.0834821200855913
DIIRFNYL	8	Unmodified	_DIIRFNYL_					0	0	0		ENST00000520481.1_1_8:28304597-28321161:-|nuORF;nc|ENSG00000214050|Q8IX29-2|FBXO16;ENSG00000214050|ENST00000380254|FBXO16;PPP1R9A-FBXO16|1|fusion	ENST00000520481.1_1_8:28304597-28321161:-|nuORF	ENST00000520481.1_1_8:28304597-28321161:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.8259887695312	2	527.290017	1052.56548	-1.3977	-0.00073701	0.037578	1.9814E-05	-1.3602	-0.0007172	527.2899294107235	101.15	1.1395	100.39	99.823	100.96	-0.76401					40	22	2	0	0	0	0.028476	1	9235	9235		68.485	5.5063	1	60847			4198	13107	3248	3258	5508	5508					0.04130046822888289
DIISPISGTI	10	Unmodified	_DIISPISGTI_					0	0	0		tr|A0A7D6VWM1|A0A7D6VWM1_9CLOTM23familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04700PE=4SV=1	tr|A0A7D6VWM1|A0A7D6VWM1_9CLOTM23familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04700PE=4SV=1	tr|A0A7D6VWM1|A0A7D6VWM1_9CLOTM23familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04700PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.8199462890625	2	508.28714	1014.55973	1.7309	0.00087978	1.9808	0.0010068	3.7117	0.0018866	508.28806199078934	83.556	1.7656	83.556	82.865	84.631	0					80	41	2	0	0	0	0.026849	1	8600	8600		40.778	0	1	1058900			4199	35254	3249	3259	5509	5509					0.053029035205895525
DIKDKINNN	9	Unmodified	_DIKDKINNN_					0	0	0		tr|A0A7D6ZNX4|A0A7D6ZNX4_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_18025PE=4SV=1	tr|A0A7D6ZNX4|A0A7D6ZNX4_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_18025PE=4SV=1	tr|A0A7D6ZNX4|A0A7D6ZNX4_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_18025PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.2843017578125	2	537.28292	1072.55129	-0.57146	-0.00030704	0.35275	0.00018952	-0.21872	-0.00011751	537.2829142701952	68.6	1.0837	65.11	64.867	65.951	-3.4902					49	21	3	0	0	0	0.26076	1	5103	5103		67.494	3.2864	1	386060			4200	35685	3250	3260	5510	5510					0.017913496039454913
DIKDKINNN	9	Unmodified	_DIKDKINNN_					0	0	0		tr|A0A7D6ZNX4|A0A7D6ZNX4_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_18025PE=4SV=1	tr|A0A7D6ZNX4|A0A7D6ZNX4_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_18025PE=4SV=1	tr|A0A7D6ZNX4|A0A7D6ZNX4_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_18025PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	537.28292	1072.55129	-1.922	-0.0010327	1.9104	0.0010264	-0.011638	-6.2529E-06	537.2836829842532	67.895	0.93645	65.234	64.793	65.729	-2.661	0.06206	0.0011925	NaN	67.494	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81999			4201	35685	3250	3260							0.017913496039454913
DIKGAIVSPM	10	Unmodified	_DIKGAIVSPM_					0	0	0		tr|A0A7D6VNF5|A0A7D6VNF5_9CLOTPentapeptiderepeat-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15175PE=4SV=1	tr|A0A7D6VNF5|A0A7D6VNF5_9CLOTPentapeptiderepeat-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15175PE=4SV=1	tr|A0A7D6VNF5|A0A7D6VNF5_9CLOTPentapeptiderepeat-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15175PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.7853393554688	2	515.78371	1029.55287	-1.0049	-0.00051829	4.2978	0.0022168	3.293	0.0016985	515.7859763576116	37.367	1.0519	37.367	36.931	37.983	0					33	22	2	0	0	0	0.55109	1	2038	2038		47.96	3.8427	1	2144900			4202	34701	3251	3261	5511	5511					0.039272673683626635
DIKLIMRVM	9	2 Oxidation (M)	_DIKLIM(Oxidation (M))RVM(Oxidation (M))_		DIKLIM(1)RVM(1)		DIKLIM(72)RVM(72)	0	0	2			REV__nc|ENSG00000150753|P48643-2|CCT5	REV__nc|ENSG00000150753|P48643-2|CCT5	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8177490234375	2	575.81977	1149.62499	-0.060542	-3.4861E-05	-3.2856	-0.0018919	-3.3461	-0.0019268	575.8178355273783	92.029	1.9727	90.793	90.326	92.298	-1.2355					102	37	4	0	0	0	0.22621	1	8183	8183		71.877	10.906	1	777100	+		4203	20200	3252	3262	5512	5512		470;471			0.05615858450414635
DIKLKKAPPN	10	Unmodified	_DIKLKKAPPN_					0	0	0			REV__TAF11|p.A80P|1|0.05|ENSG00000064995|chr6:34883014-34883014|C/G|missense_variant	REV__TAF11|p.A80P|1|0.05|ENSG00000064995|chr6:34883014-34883014|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	562.3432006835938	2	562.345323	1122.67609	-1.142	-0.00064221	-2.621	-0.0014739	-3.7631	-0.0021161	562.3438081477608	141.84	4.7959	141.62	140.24	145.03	-0.22697					133	96	2	0	0	0	0.74374	1	14334	14334		25.574	1.0549	1	113870	+		4204	29483	3253	3263	5513	5513					0.11966266811123205
DIKNQLILI	9	Unmodified	_DIKNQLILI_					0	0	0			REV__ENST00000487075.1_1_X:24073085-24080702:+|nuORF	REV__ENST00000487075.1_1_X:24073085-24080702:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.306640625	2	535.334424	1068.6543	-0.11896	-6.3681E-05	-2.9005	-0.0015527	-3.0194	-0.0016164	535.3326942586043	51.355	0.83321	51.355	51.12	51.953	0					36	19	3	0	0	0	0.027017	1	4038	4038		82.241	0	1	1095300	+		4205	18966	3254	3264	5514	5514					0.12271462062562932
DIKNVVVIPTL	11	Unmodified	_DIKNVVVIPTL_					0	0	0			REV__tr|A0A553SPC4|A0A553SPC4_NIACILargeribosomalsubunitassemblyfactorBipAOS=NialliacirculansOX=1397GN=typAPE=3SV=1	REV__tr|A0A553SPC4|A0A553SPC4_NIACILargeribosomalsubunitassemblyfactorBipAOS=NialliacirculansOX=1397GN=typAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	605.8704833984375	2	605.873914	1209.73327	-4.8731	-0.0029525	1.7175	0.0010406	-3.1556	-0.0019119	605.8747875580638	157.58	1.169	156.04	155.73	156.9	-1.545					92	31	4	0	0	0	0.72479	1	15647	15647		18.262	2.6203	1	205220	+		4206	30523	3255	3265	5515	5515					0.13679689296850484
DIKPIQVQF	9	Unmodified	_DIKPIQVQF_					0	0	0			REV__ENSG00000134698|ENST00000373210|AGO4	REV__ENSG00000134698|ENST00000373210|AGO4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.8218383789062	2	544.310949	1086.60735	-0.0958	-5.2145E-05	-1.2748	-0.00069388	-1.3706	-0.00074602	544.3101256966173	89.387	0.99138	86.784	86.532	87.523	-2.6027					34	19	3	0	0	0	0.027462	1	7748	7748		38.806	17.859	1	326500	+		4207	19222	3256	3266	5516	5516					0.06750602511442594
DIKRILRA	8	Unmodified	_DIKRILRA_					0	0	0		tr|A0A7D7A5G7|A0A7D7A5G7_9CLOTImidazoleglycerolphosphatesynthasesubunitHisFOS=ClostridiumintestinaleOX=36845GN=hisFPE=3SV=1	tr|A0A7D7A5G7|A0A7D7A5G7_9CLOTImidazoleglycerolphosphatesynthasesubunitHisFOS=ClostridiumintestinaleOX=36845GN=hisFPE=3SV=1	tr|A0A7D7A5G7|A0A7D7A5G7_9CLOTImidazoleglycerolphosphatesynthasesubunitHisFOS=ClostridiumintestinaleOX=36845GN=hisFPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	492.81817626953125	2	492.819276	983.623999	-1.0524	-0.00051866	0.60887	0.00030006	-0.44358	-0.0002186	492.81937696825383	61.985	2.6287	59.225	58.882	61.511	-2.7593					139	50	4	0	0	0	0.70469	1	4624	4624		42.396	1.8235	1	798600			4208	36170	3257	3267	5517	5517					0.13153148188030173
DIKSLEKYII	10	Unmodified	_DIKSLEKYII_					0	0	0		ENSG00000196305|ENST00000443024|IARS1;IPPK-IARS|1|fusion	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	OvCa9_classI_Rep2	2	611.3544921875	2	611.358096	1220.70164	-3.7398	-0.0022864	0.47754	0.00029195	-3.2623	-0.0019944	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.762	3	15358	15307;15342;15358		23.523	7.0495	1	331570			4209	8588	3258	3268	5518;5519;5520	5520					0.1001169654291516
DIKSLEKYII	10	Unmodified	_DIKSLEKYII_					0	0	0		ENSG00000196305|ENST00000443024|IARS1;IPPK-IARS|1|fusion	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3543701171875	2	611.358096	1220.70164	-2.3862	-0.0014588	-1.0817	-0.0006613	-3.4678	-0.0021201	611.3572929291362	147.43	3.7918	146.48	144.56	148.35	-0.9512					254	75	5	0	0	0	0.73378	1	12391	12391		26.693	1.1189	1	250910			4210	8588	3258	3268	5521	5521					0.1001169654291516
DIKSLEKYII	10	Unmodified	_DIKSLEKYII_					0	0	0		ENSG00000196305|ENST00000443024|IARS1;IPPK-IARS|1|fusion	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.353271484375	2	611.358096	1220.70164	-1.5159	-0.00092675	-1.8316	-0.0011197	-3.3474	-0.0020465	611.3567832501896	147.85	3.7824	146.41	144.39	148.17	-1.4351					181	75	4	0	0	0	0.74374	1	14561	14561		25.574	2.5316	1	164640			4211	8588	3258	3268	5522	5522					0.1001169654291516
DIKSLEKYII	10	Unmodified	_DIKSLEKYII_					0	0	0		ENSG00000196305|ENST00000443024|IARS1;IPPK-IARS|1|fusion	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3546142578125	2	611.358096	1220.70164	-2.725	-0.001666	-0.73961	-0.00045217	-3.4646	-0.0021181	611.3575283211214	150.83	4.6872	149.39	148.02	152.71	-1.4344					404	109	6	0	0	0	0.67931	1	15071	15071		32.812	3.6629	1	435030			4212	8588	3258	3268	5523	5523					0.1001169654291516
DIKVKIGHG	9	Unmodified	_DIKVKIGHG_					0	0	0			REV__tr|A0A7D6VPY5|A0A7D6VPY5_9CLOTCopper-exportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20805PE=3SV=1	REV__tr|A0A7D6VPY5|A0A7D6VPY5_9CLOTCopper-exportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20805PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.8276062011719	2	483.790184	965.565815	-0.73774	-0.00035691	-0.51794	-0.00025057	-1.2557	-0.00060748	483.7901945290391	73.689	2.207	70.293	69.93	72.137	-3.3961					73	45	3	0	0	0	0.027462	1	5811	5811		40.573	12.318	1	153650	+		4213	31289	3259	3269	5524	5524					0.08165466542777722
DIKVRSPLGL	10	Unmodified	_DIKVRSPLGL_					0	0	0		nc|ENSG00000149564|Q96AP7-2|ESAM	nc|ENSG00000149564|Q96AP7-2|ESAM	nc|ENSG00000149564|Q96AP7-2|ESAM	MULTI-SECPEP	OvCa9_classI_Rep3	3	550.3274536132812	2	549.337498	1096.66044	-1.568	-0.00086134	-4.4602	-0.0024502	-6.0282	-0.0033115	549.3346207972846	85.761	0.95243	83.541	83.184	84.137	-2.2204					26	18	2	0	0	0	0.026656	1	5122	5122		56.434	25.865	1	37096			4214	15085	3260	3270	5525	5525					0.11597980294095578
DILDILELV	9	Unmodified	_DILDILELV_					0	0	0		nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-2|UNC80;nc|ENSG00000144406|Q8N2C7-4|UNC80;ENST00000489023.5_1_2:210693994-210832362:+|nuORF	nc|ENSG00000144406|Q8N2C7-7|UNC80	nc|ENSG00000144406|Q8N2C7-7|UNC80	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.81494140625	2	521.805165	1041.59578	1.2517	0.00065312	3.8566	0.0020124	5.1083	0.0026655	521.8061240277231	111.45	0.54515	110.35	110.1	110.65	-1.1038					21	10	4	0	0	0	0.027455	1	8074	8074		51.335	12.314	1	25469			4215	5149	3261	3271	5526	5526					0.07664360697413031
DILEIMPAI	9	Unmodified	_DILEIMPAI_					0	0	0			REV__tr|A0A553SM43|A0A553SM43_NIACI6-phospho-alpha-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_21870PE=3SV=1	REV__tr|A0A553SM43|A0A553SM43_NIACI6-phospho-alpha-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_21870PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	507.77886962890625	2	507.780636	1013.54672	-2.4343	-0.0012361	-1.0481	-0.00053221	-3.4824	-0.0017683	507.7799378627202	140.33	1.3285	139.29	138.64	139.97	-1.0339					59	26	4	0	0	0	0.38529	1	11552	11552		53.351	7.3995	1	82161	+		4216	30293	3262	3272	5527	5527					0.04048749136825336
DILETIRI	8	Unmodified	_DILETIRI_					0	0	0		ENSG00000170819|ENST00000302334|BFSP2	ENSG00000170819|ENST00000302334|BFSP2	ENSG00000170819|ENST00000302334|BFSP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.7911682128906	2	486.78985	971.565146	0.19221	9.3564E-05	-0.41888	-0.00020391	-0.22668	-0.00011034	486.7895650092993	90.351	1.3286	87.776	87.501	88.829	-2.575					79	25	4	0	0	0	0.53531	1	7807	7807		73.975	5.1879	1	1072900			4217	7138	3263	3273	5528	5528					0.07822627103041668
DILIAIKGE	9	Unmodified	_DILIAIKGE_					0	0	0			REV__tr|A0A553SHG9|A0A553SHG9_NIACIRibose-phosphatepyrophosphokinaseOS=NialliacirculansOX=1397GN=prsPE=3SV=1	REV__tr|A0A553SHG9|A0A553SHG9_NIACIRibose-phosphatepyrophosphokinaseOS=NialliacirculansOX=1397GN=prsPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.2914733886719	2	486.292225	970.569897	-0.28705	-0.00013959	-2.5399	-0.0012351	-2.8269	-0.0013747	486.29057557018166	46.777	2.2575	43.705	42.666	44.923	-3.0724					123	43	5	0	0	0	0.48324	1	2497	2497		44.117	5.3107	1	2684900	+		4218	29802	3264	3274	5529	5529					0.08343511245800528
DILKEWLPD	9	Unmodified	_DILKEWLPD_					0	0	0			REV__tr|A0A553SL96|A0A553SL96_NIACIDnaDdomainproteinOS=NialliacirculansOX=1397GN=CEQ21_20210PE=4SV=1	REV__tr|A0A553SL96|A0A553SL96_NIACIDnaDdomainproteinOS=NialliacirculansOX=1397GN=CEQ21_20210PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	563.84423828125	2	564.800414	1127.58628	-0.79222	-0.00044745	-0.0095308	-5.383E-06	-0.80175	-0.00045283	564.8003426074407	116.19	0.59195	115.15	114.95	115.54	-1.0414					15	11	2	0	0	0	0.027441	1	8706	8706		49.442	0	1	13638	+		4219	30204	3265	3275	5530	5530					0.02758592411896643
DILKKSSH	8	Unmodified	_DILKKSSH_					0	0	0		ENSG00000130638|ENST00000252934|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.2790222167969	2	464.266542	926.51853	-0.28829	-0.00013385	0.096495	4.4799E-05	-0.1918	-8.9046E-05	464.2663798194126	76.058	1.2451	73.119	72.352	73.598	-2.9389					31	25	2	0	0	0	0.028476	1	5986	5986		25.45	0	1	59471			4220	3997	3266	3276	5531	5531					0.052331872717559236
DILKLYHI	8	Unmodified	_DILKLYHI_					0	0	0			REV__ENST00000490251.1_1_7:43679183-43685017:-|nuORF	REV__ENST00000490251.1_1_7:43679183-43685017:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.267578125	2	507.80276	1013.59097	-1.0898	-0.00055339	-3.0995	-0.0015739	-4.1893	-0.0021273	507.80103614897763	87.65	1.2341	85.473	84.985	86.219	-2.1768					48	23	3	0	0	0	0.028476	1	5279	5279		57.811	0	1	143840	+		4221	17812	3267	3277	5532	5532					0.08471521345302335
DILKPLNLH	9	Unmodified	_DILKPLNLH_					0	0	0			REV__ENSG00000150773|ENST00000280350|PIH1D2	REV__ENSG00000150773|ENST00000280350|PIH1D2	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8179321289062	2	531.818941	1061.62333	0.089047	4.7357E-05	-3.7428	-0.0019905	-3.6538	-0.0019431	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.62352	1	13820	13820		29.15	1.2673	1	263230	+		4222	20204	3268	3278	5533	5533					0.09498308748311501
DILNAGDKLT	10	Unmodified	_DILNAGDKLT_					0	0	0		ENSG00000107672|ENST00000369023|NSMCE4A;nc|ENSG00000107672|Q9NXX6-2|NSMCE4A	ENSG00000107672|ENST00000369023|NSMCE4A	ENSG00000107672|ENST00000369023|NSMCE4A	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.319091796875	2	530.287671	1058.56079	0.011027	5.8473E-06	-4.156	-0.0022039	-4.1449	-0.002198	530.2874918221625	70.975	0.74374	70.975	70.722	71.466	0					38	18	4	0	0	0	0.026551	1	6875	6875		69.628	0	1	1156600			4223	2608	3269	3279	5534	5534					0.03385117889456524
DILRAAQDF	9	Unmodified	_DILRAAQDF_					0	0	0		ENST00000401550.2_1_13:99262776-99262983:-|nuORF	ENST00000401550.2_1_13:99262776-99262983:-|nuORF	ENST00000401550.2_1_13:99262776-99262983:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.8392333984375	2	524.774731	1047.53491	1.7287	0.00090716	1.263	0.00066277	2.9916	0.0015699	524.7767990160579	100.11	0.59157	100.11	99.896	100.49	0					24	13	2	0	0	0	0.027418	1	11066	11066		49.442	0	1	629430			4224	11417	3270	3280	5535	5535					0.013042684378433478
DILRNEDS	8	Unmodified	_DILRNEDS_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14;ENST00000438440.2_1_3:123674869-123680035:-|nuORF	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.2458801269531	2	481.232896	960.451239	-0.21369	-0.00010284	-0.25407	-0.00012227	-0.46777	-0.0002251	481.2325457543362	40.742	0.17556	40.742	40.619	40.795	0					5	3	2	0	0	0	0.028476	1	2495	2495		18.324	0	1	22229			4225	7545	3271	3281	5536	5536					-0.030568877298605912
DILSGIKSTI	10	Unmodified	_DILSGIKSTI_					0	0	0			REV__ENST00000505723.2_1_5:50723860-50724037:-|nuORF	REV__ENST00000505723.2_1_5:50723860-50724037:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.824951171875	2	523.808239	1045.60193	-1.2591	-0.00065951	1.8485	0.00096828	0.58948	0.00030878	523.8092803408183	81.634	1.5555	78.93	78.157	79.712	-2.7039					52	31	2	0	0	0	0.026606	1	6709	6709		52.937	5.2794	1	143640	+		4226	26880	3272	3282	5537	5537					0.0809487892895504
DILTYIHT	8	Unmodified	_DILTYIHT_					0	0	0		ENSG00000147183|ENST00000276127|CPXCR1	ENSG00000147183|ENST00000276127|CPXCR1	ENSG00000147183|ENST00000276127|CPXCR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.7763366699219	2	488.260925	974.507297	2.8943	0.0014132	3.9578	0.0019324	6.8521	0.0033456	488.26293031080354	89.735	0.45747	89.735	89.476	89.933	0					19	10	2	0	0	0	0.028476	1	9559	9559		45.952	0	1	512060			4227	5340	3273	3283	5538	5538					0.01902365177613774
DILVGENDL	9	Unmodified	_DILVGENDL_					0	0	0		ENSG00000128833|ENST00000261839|MYO5C;nc|ENSG00000128833|Q9NQX4-2|MYO5C;MYO5C|p.W521Sfs*6|1|0.26|ENSG00000128833|chr15:52251489-52251490|CC/-|frameshift_variant;ENST00000541028.5_1_15:52553308-52587917:-|nuORF;MYO5A|p.P112Vfs*35|1|0.05|ENSG00000197535|chr15:52425951-52425952|-/TAAAACATAAC|frameshift_variant;ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	ENSG00000128833|ENST00000261839|MYO5C;ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000197535|Q9Y4I1-2|MYO5A	ENSG00000128833|ENST00000261839|MYO5C	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.3064270019531	2	494.253297	986.492041	2.4804	0.0012259	-0.30931	-0.00015288	2.1711	0.0010731	494.2529908065366	90.342	0.92534	90.342	89.891	90.816	0					42	22	3	0	0	0	0.027403	1	9625	9625		60.118	0	1	11569000			4228	3907;6778;8720	3274	3284	5539	5539					-0.0017454641023277873
DILVNDMKF	9	Oxidation (M)	_DILVNDM(Oxidation (M))KF_		DILVNDM(1)KF		DILVNDM(62)KF	0	0	1			REV__ENSG00000131013|ENST00000253329|PPIL4	REV__ENSG00000131013|ENST00000253329|PPIL4	MULTI-MSMS	OvCa99_classI_Rep5	1	555.77978515625	2	555.778625	1109.5427	2.2318	0.0012404	-2.2964	-0.0012763	-0.064577	-3.589E-05	555.7770070949485	118.13	0.41985	118.13	117.97	118.39	0					15	8	3	0	0	0	0.3076	1	13546	13546		62.107	9.1707	1	195730	+		4229	18988	3275	3285	5540	5540		437			-0.007693403568964641
DIMAKRIT	8	Unmodified	_DIMAKRIT_					0	0	0		ENSG00000165164|ENST00000378653|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	MULTI-SECPEP	OvCa9_classI_Rep3	3	473.2853088378906	2	474.27077	946.526987	0.16108	7.6397E-05	-4.0617	-0.0019263	-3.9006	-0.0018499	474.26870467681806	87.901	1.3151	85.724	85.293	86.608	-2.1768					55	25	3	0	0	0	0.028476	1	5280	5280		23.042	6.5693	1	198460			4230	6529	3276	3286	5541	5541					0.05158417916720737
DIMLFWAF	8	Unmodified	_DIMLFWAF_					0	0	0		ENST00000439174.6_1_17:63008152-63008242:-|nuORF	ENST00000439174.6_1_17:63008152-63008242:-|nuORF	ENST00000439174.6_1_17:63008152-63008242:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.2969970703125	2	521.756964	1041.49937	-0.61733	-0.0003221	-1.1915	-0.00062165	-1.8088	-0.00094375	521.7561589477639	52.438	0.48324	52.438	52.214	52.697	0					21	10	3	0	0	0	0.028476	1	4092	4092		29.842	1.9593	1	489820			4231	11909	3277	3287	5542	5542					-0.01971485343506174
DIMSPRLVLM	10	2 Oxidation (M)	_DIM(Oxidation (M))SPRLVLM(Oxidation (M))_		DIM(1)SPRLVLM(1)		DIM(77)SPRLVLM(77)	0	0	2			REV__ENST00000374875.5_1_10:33468482-33468866:-|nuORF	REV__ENST00000374875.5_1_10:33468482-33468866:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	603.813232421875	2	603.814684	1205.61482	2.3788	0.0014364	-3.2868	-0.0019846	-0.90801	-0.00054827	603.8108203246145	108.32	1.384	108.32	107.94	109.33	0					107	31	6	0	0	0	0.32926	1	12265	12265		77.318	7.69	1	1245000	+		4232	25072	3278	3288	5543	5543		568;569			0.020232507251876086
DIMSPRLVLM	10	2 Oxidation (M)	_DIM(Oxidation (M))SPRLVLM(Oxidation (M))_					0	0	2			REV__ENST00000374875.5_1_10:33468482-33468866:-|nuORF	REV__ENST00000374875.5_1_10:33468482-33468866:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	603.814684	1205.61482	2.3788	0.0014364	-3.2868	-0.0019846	-0.90801	-0.00054827	603.8108203246145	108.32	1.384	108.32	107.94	109.33	0	-0.167	-0.0023073	NaN	77.318	107	31	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1245000	+		4233	25072	3278	3288				568;569			0.020232507251876086
DIMSPRLVLM	10	2 Oxidation (M)	_DIM(Oxidation (M))SPRLVLM(Oxidation (M))_					0	0	2			REV__ENST00000374875.5_1_10:33468482-33468866:-|nuORF	REV__ENST00000374875.5_1_10:33468482-33468866:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	603.814684	1205.61482	1.5471	0.00093414	2.1747	0.0013131	3.7217	0.0022472	603.814968337741	110.26	0.73669	108.65	108.23	108.96	-1.6011	0.167	0.0042881	NaN	77.318	23	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13273	+		4234	25072	3278	3288				568;569			0.020232507251876086
DINDKELMD	9	Unmodified	_DINDKELMD_					0	0	0		tr|A0A553SKD4|A0A553SKD4_NIACIMultifunctionalfusionproteinOS=NialliacirculansOX=1397GN=secDFPE=3SV=1	tr|A0A553SKD4|A0A553SKD4_NIACIMultifunctionalfusionproteinOS=NialliacirculansOX=1397GN=secDFPE=3SV=1	tr|A0A553SKD4|A0A553SKD4_NIACIMultifunctionalfusionproteinOS=NialliacirculansOX=1397GN=secDFPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.8252563476562	2	546.747521	1091.48049	0.70987	0.00038812	3.7807	0.0020671	4.4905	0.0024552	546.748478784055	66.96	0.27658	66.96	66.779	67.055	0					9	6	2	0	0	0	0.027462	1	6218	6218		45.972	3.5761	1	130080			4235	33605	3279	3289	5544	5544					-0.06159111495867364
DINKGILLQL	10	Unmodified	_DINKGILLQL_					0	0	0		MCM4|p.K477N|1|0.26|ENSG00000104738|chr8:47970054-47970054|G/C|missense_variant	MCM4|p.K477N|1|0.26|ENSG00000104738|chr8:47970054-47970054|G/C|missense_variant	MCM4|p.K477N|1|0.26|ENSG00000104738|chr8:47970054-47970054|G/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.8115844726562	2	563.845156	1125.67576	1.4126	0.00079651	-1.6543	-0.00093275	-0.24164	-0.00013625	563.8441274149285	109.49	1.4665	107.77	107.42	108.89	-1.7256					47	27	3	0	0	0	0.02676	1	10047	10047		33.922	3.6039	1	98716			4236	14824	3280	3290	5545	5545					0.11794847091300653
DINKPKKF	8	Unmodified	_DINKPKKF_					0	0	0		ENSG00000173145|ENST00000371361|NOC3L	ENSG00000173145|ENST00000371361|NOC3L	ENSG00000173145|ENST00000371361|NOC3L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.2562255859375	2	495.292559	988.570566	-1.888	-0.0009351	-0.84516	-0.0004186	-2.7331	-0.0013537	495.2924834424033	49.367	1.1935	46.225	45.417	46.61	-3.1416					32	22	2	0	0	0	0.028476	1	2708	2708		23.042	6.5693	1	54116			4237	7352	3281	3291	5546	5546					0.07582350685515848
DINLKPINQ	9	Unmodified	_DINLKPINQ_					0	0	0			REV__tr|A0A7D6ZWH0|A0A7D6ZWH0_9CLOTDUF4320familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07885PE=4SV=1	REV__tr|A0A7D6ZWH0|A0A7D6ZWH0_9CLOTDUF4320familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07885PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.2816162109375	2	527.798206	1053.58186	-0.14137	-7.4613E-05	3.7433	0.0019757	3.602	0.0019011	527.7998553047672	109.83	1.2635	108.23	107.7	108.96	-1.6011					53	23	3	0	0	0	0.027462	1	10172	10172		47.657	19.775	1	104670	+		4238	32286	3282	3292	5547	5547					0.057211279889770594
DIPFVIFY	8	Unmodified	_DIPFVIFY_					0	0	0		chr5:124062510-124213455|90|11.21|0.0|12.03|-|0|TE_info:L1PA4,L1PA4_dup4151,L1,LINE,donor,+,124213455,124219314|LINC01170,None|62	chr5:124062510-124213455|90|11.21|0.0|12.03|-|0|TE_info:L1PA4,L1PA4_dup4151,L1,LINE,donor,+,124213455,124219314|LINC01170,None|62	chr5:124062510-124213455|90|11.21|0.0|12.03|-|0|TE_info:L1PA4,L1PA4_dup4151,L1,LINE,donor,+,124213455,124219314|LINC01170,None|62	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.786865234375	2	507.270761	1012.52697	2.0637	0.0010468	-3.3768	-0.001713	-1.3131	-0.00066612	507.77056260200357	118.16	0.27907	118.16	118.02	118.3	0					9	5	2	0	0	0	0.028476	1	13528	13528		20.482	1.1219	1	33748			4239	494	3283	3293	5548	5548					0.02120741188377906
DIPMDIDNN	9	Unmodified	_DIPMDIDNN_					0	0	0		ENSG00000115825|ENST00000234179|PRKD3;PRKD3|p.Q586Tfs*11|1|0.12|ENSG00000115825|chr2:37269636-37269637|-/T|frameshift_variant;nc|ENSG00000115825|O94806-2|PRKD3;ENST00000494667.5_1_2:37496701-37543667:-|nuORF	ENSG00000115825|ENST00000234179|PRKD3	ENSG00000115825|ENST00000234179|PRKD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.3097534179688	2	523.726589	1045.43863	2.1683	0.0011356	4.374	0.0022908	6.5423	0.0034264	523.7286504177997	116.2	0.41146	116.2	116	116.42	0					16	8	3	0	0	0	0.027462	1	13315	13315		25.574	0	1	129560			4240	3130	3284	3294	5549	5549					-0.08227667184405618
DIPNLRRLDF	10	Unmodified	_DIPNLRRLDF_					0	0	0		ENSG00000106809|ENST00000375561|OGN	ENSG00000106809|ENST00000375561|OGN	ENSG00000106809|ENST00000375561|OGN	MULTI-MSMS	OvCa9_classI_Rep4_	4	420.2358093261719	3	420.234933	1257.68297	-1.1437	-0.00048063	1.0583	0.00044475	-0.08539	-3.5884E-05	420.23536394532596	82.248	1.4587	79.565	79.251	80.71	-2.6829					86	29	4	0	0	0	0.55109	1	6799	6799		47.96	0.30219	1	872280			4241	2575	3285	3295	5550	5550					0.06443579691699597
DIPRPIKVR	9	Unmodified	_DIPRPIKVR_					0	0	0		ENST00000528806.5_1_14:23598711-23607206:-|nuORF	ENST00000528806.5_1_14:23598711-23607206:-|nuORF	ENST00000528806.5_1_14:23598711-23607206:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	546.8115234375	2	547.345658	1092.67676	-0.32477	-0.00017776	-4.1208	-0.0022555	-4.4455	-0.0024332	547.3428944897465	77.386	0.20676	75.597	75.468	75.675	-1.7894					5	3	2	0	0	0	0.027462	1	6441	6441		23.042	5.6775	1	5414.6			4242	13262	3286	3296	5551	5551					0.13413106250845885
DIPRVTALN	9	Unmodified	_DIPRVTALN_					0	0	0		nc|ENSG00000134762|Q14574-2|DSC3;ENSG00000134762|ENST00000360428|DSC3	nc|ENSG00000134762|Q14574-2|DSC3	nc|ENSG00000134762|Q14574-2|DSC3	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.9449462890625	2	499.785099	997.555644	-0.39107	-0.00019545	-0.018374	-9.1831E-06	-0.40945	-0.00020464	499.7849720041312	80.685	0.97729	78.363	78.03	79.007	-2.3226					30	18	2	0	0	0	0.027411	1	4487	4487		54.776	19.158	1	380220			4243	4326	3287	3297	5552	5552					0.05676858817514585
DIQIIACPSM	10	Unmodified	_DIQIIACPSM_					0	0	0		ENST00000486940.2_1_13:46090326-46105393:+|nuORF;ENSG00000136152|ENST00000349995|COG3	ENST00000486940.2_1_13:46090326-46105393:+|nuORF	ENST00000486940.2_1_13:46090326-46105393:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.7936401367188	2	545.767203	1089.51985	2.6481	0.0014453	-0.55146	-0.00030097	2.0967	0.0011443	545.7654089798334	100.79	0.74818	100.79	100.44	101.19	0					59	17	6	0	0	0	0.026891	1	11183	11183		24.519	0	1	787120			4244	4463	3288	3298	5553	5553					-0.02132682746014325
DIQIVKHIV	9	Unmodified	_DIQIVKHIV_					0	0	0		tr|A0A7D6VWF0|A0A7D6VWF0_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08075PE=4SV=1	tr|A0A7D6VWF0|A0A7D6VWF0_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08075PE=4SV=1	tr|A0A7D6VWF0|A0A7D6VWF0_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08075PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	531.8423461914062	2	532.826766	1063.63898	-1.7811	-0.00094901	0.73819	0.00039333	-1.0429	-0.00055569	532.8270486976717	85.908	1.0222	84.417	84.146	85.168	-1.4906					51	19	4	0	0	0	0.027462	1	7513	7513		40.778	11.629	1	297730			4245	35247	3289	3299	5554	5554					0.1097059526537123
DIQVKKTFK	9	Unmodified	_DIQVKKTFK_					0	0	0			REV__nc|ENSG00000214575|Q9BZB8-4|CPEB1	REV__nc|ENSG00000214575|Q9BZB8-4|CPEB1	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8292236328125	2	553.832049	1105.64954	-0.12008	-6.6502E-05	-3.596	-0.0019916	-3.7161	-0.0020581	553.8299276335473	138.55	4.0786	138.32	136.16	140.24	-0.22696					182	83	3	0	0	0	0.66262	1	13902	13902		24.519	5.4157	1	64451	+		4246	23292	3290	3300	5555	5555					0.10094577919812764
DIRDAVKLL	9	Unmodified	_DIRDAVKLL_					0	0	0		ZBTB41|p.I168R|1|0.26|ENSG00000177888|chr1:197199971-197199971|A/C|missense_variant	ZBTB41|p.I168R|1|0.26|ENSG00000177888|chr1:197199971-197199971|A/C|missense_variant	ZBTB41|p.I168R|1|0.26|ENSG00000177888|chr1:197199971-197199971|A/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	521.8136596679688	2	521.816399	1041.61824	0.45107	0.00023538	-0.20287	-0.00010586	0.2482	0.00012951	521.8161309836105	110.4	1.9235	110.23	109.86	111.78	-0.17237					90	38	4	0	0	0	0.2422	1	10426	10426		69.628	5.4204	1	440840			4247	36314	3291	3301	5556	5556					0.09910004885705348
DIRDAVKLL	9	Unmodified	_DIRDAVKLL_					0	0	0		ZBTB41|p.I168R|1|0.26|ENSG00000177888|chr1:197199971-197199971|A/C|missense_variant	ZBTB41|p.I168R|1|0.26|ENSG00000177888|chr1:197199971-197199971|A/C|missense_variant	ZBTB41|p.I168R|1|0.26|ENSG00000177888|chr1:197199971-197199971|A/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	521.8148193359375	2	521.816399	1041.61824	1.2388	0.00064644	-1.0859	-0.00056666	0.15289	7.9782E-05	521.8156556672232	111.31	1.926	110.21	109.9	111.83	-1.1038					90	38	4	0	0	0	0.094616	5	8080	8080;8087;8099;8107;8113		98.629	10.933	1	431530			4248	36314	3291	3301	5557;5558;5559;5560;5561	5557					0.09910004885705348
DIRDAVKLL	9	Unmodified	_DIRDAVKLL_					0	0	0		ZBTB41|p.I168R|1|0.26|ENSG00000177888|chr1:197199971-197199971|A/C|missense_variant	ZBTB41|p.I168R|1|0.26|ENSG00000177888|chr1:197199971-197199971|A/C|missense_variant	ZBTB41|p.I168R|1|0.26|ENSG00000177888|chr1:197199971-197199971|A/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.8140258789062	2	521.816399	1041.61824	-0.050483	-2.6343E-05	-0.070159	-3.661E-05	-0.12064	-6.2953E-05	521.8161194968234	111.82	1.7882	110.31	110	111.79	-1.5111					76	34	4	0	0	0	0.1804	1	10316	10316		79.713	8.4169	1	478680			4249	36314	3291	3301	5562	5562					0.09910004885705348
DIRITSVD	8	Unmodified	_DIRITSVD_					0	0	0		tr|A0A553SGF6|A0A553SGF6_NIACISporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_10800PE=3SV=1	tr|A0A553SGF6|A0A553SGF6_NIACISporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_10800PE=3SV=1	tr|A0A553SGF6|A0A553SGF6_NIACISporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_10800PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	459.7478332519531	2	459.748182	917.481811	0.11081	5.0944E-05	-2.6368	-0.0012123	-2.526	-0.0011613	459.74692721388755	70.88	0.9857	70.88	70.603	71.589	0					47	24	3	0	0	0	0.60899	1	6830	6830		62.107	1.9892	1	1371700			4250	33151	3292	3302	5563	5563					0.019768906551917098
DIRLDWET	8	Unmodified	_DIRLDWET_					0	0	0		ENSG00000008226|ENST00000308059|DLEC1;nc|ENSG00000008226|Q9Y238-3|DLEC1	ENSG00000008226|ENST00000308059|DLEC1	ENSG00000008226|ENST00000308059|DLEC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.3015747070312	2	524.258914	1046.50327	0.84381	0.00044237	4.2505	0.0022284	5.0943	0.0026707	524.2609566102426	85.531	0.98294	82.885	82.61	83.593	-2.6463					38	19	3	0	0	0	0.028476	1	7174	7174		12.207	0	1	82197			4251	914	3293	3303	5564	5564					-0.018117243160759244
DIRPPKLDE	9	Unmodified	_DIRPPKLDE_					0	0	0			REV__ENSG00000097096|ENST00000341460|SYDE2	REV__ENSG00000097096|ENST00000341460|SYDE2	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.3040771484375	2	541.795663	1081.57677	1.7848	0.00096701	4.1792	0.0022643	5.964	0.0032313	541.7977310893245	110.92	0.57471	110.92	110.67	111.24	0					23	12	3	0	0	0	0.027462	1	12638	12638		37.812	6.2817	1	322920	+		4252	17312	3294	3304	5565	5565					0.03924824126352178
DISCQHAAL	9	Unmodified	_DISCQHAAL_					0	0	0		PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant;PRKDC|p.P3973Afs*40|1|0.09|ENSG00000253729|chr8:47777811-47777812|-/C|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant	PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.22796630859375	2	479.226559	956.438566	-0.46543	-0.00022304	1.3379	0.00064117	0.8725	0.00041813	479.2270160581381	106.18	1.3464	104.17	103.9	105.24	-2.0161					50	25	3	0	0	0	0.55588	1	9660	9660		37.159	0.13063	1	135430			4253	9437	3295	3305	5566	5566					-0.041396223937454124
DISCQHAAL	9	Unmodified	_DISCQHAAL_					0	0	0		PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant;PRKDC|p.P3973Afs*40|1|0.09|ENSG00000253729|chr8:47777811-47777812|-/C|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant	PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	479.226559	956.438566	-0.73617	-0.00035279	1.4441	0.00069203	0.7079	0.00033924	479.2271892244838	104.81	1.4367	104.23	103.57	105.01	-0.57639	0.062694	0.00045296	NaN	37.159	51	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37407			4254	9437	3295	3305							-0.041396223937454124
DISCQHAAL	9	Unmodified	_DISCQHAAL_					0	0	0		PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant;PRKDC|p.P3973Afs*40|1|0.09|ENSG00000253729|chr8:47777811-47777812|-/C|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant	PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	479.226559	956.438566	0.80685	0.00038666	-0.28141	-0.00013486	0.52544	0.0002518	479.22643001083327	105.45	1.2501	104.1	103.73	104.98	-1.3482	-0.061665	-0.0012008	NaN	37.159	65	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160300			4255	9437	3295	3305							-0.041396223937454124
DISFCMLI	8	Oxidation (M)	_DISFCM(Oxidation (M))LI_		DISFCM(1)LI		DISFCM(96)LI	0	0	1			REV__ENSG00000155366|ENST00000339083|RHOC	REV__ENSG00000155366|ENST00000339083|RHOC	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.2795715332031	2	479.224639	956.434726	-0.32707	-0.00015674	3.1169	0.0014937	2.7899	0.001337	479.2255179188378	95.536	0.24749	94.508	94.318	94.565	-1.0281					6	4	2	0	0	0	0.028476	1	8573	8573		96.048	16.597	1	4922.5	+		4256	16835	3296	3306	5567	5567		399			-0.045234282117917246
DISFFKEQLKQ	11	Unmodified	_DISFFKEQLKQ_					0	0	0		tr|A0A553STZ0|A0A553STZ0_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_05985PE=3SV=1	tr|A0A553STZ0|A0A553STZ0_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_05985PE=3SV=1	tr|A0A553STZ0|A0A553STZ0_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_05985PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	461.21514892578125	3	461.581998	1381.72417	-0.72442	-0.00033438	-1.5227	-0.00070284	-2.2471	-0.0010372	461.58120504777844	36.374	0.23174	36.374	36.211	36.442	0					7	4	2	0	0	0	0.026302	1	1913	1913		12.433	9.8988	1	46281			4257	34552	3297	3307	5568	5568					0.048572959405191796
DISFYEAL	8	Unmodified	_DISFYEAL_					0	0	0		nc|ENSG00000174840|Q6L8Q7-2|PDE12;ENSG00000174840|ENST00000311180|PDE12	nc|ENSG00000174840|Q6L8Q7-2|PDE12	nc|ENSG00000174840|Q6L8Q7-2|PDE12	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.2795715332031	2	479.231833	956.449113	-0.35229	-0.00016883	2.6465	0.0012683	2.2942	0.0010994	479.23332673999715	95.42	0.24751	94.392	94.268	94.516	-1.0281					7	4	2	0	0	0	0.028476	1	8573	8573		79.939	30.498	1	5737.1			4258	7496	3298	3308	5569	5569					-0.03085316467672783
DISKLVTDGTE	11	Unmodified	_DISKLVTDGTE_					0	0	0			REV__nc|ENSG00000162692|P19320-2|VCAM1	REV__nc|ENSG00000162692|P19320-2|VCAM1	MULTI-MSMS	OvCa99_classI_Rep5	1	589.300537109375	2	589.300975	1176.5874	-0.25377	-0.00014955	-1.262	-0.00074368	-1.5157	-0.00089323	589.3001558596478	32.848	3.7707	32.848	32.303	36.074	0					152	78	3	0	0	0	0.68757	1	1476	1476		33.922	1.1092	1	655400	+		4259	20765	3299	3309	5570	5570					0.006167619901589205
DISLFVHCCFL	11	Unmodified	_DISLFVHCCFL_					0	0	0		ENSG00000099219|ENST00000339450|ERMP1;nc|ENSG00000099219|Q7Z2K6-2|ERMP1	ENSG00000099219|ENST00000339450|ERMP1	ENSG00000099219|ENST00000339450|ERMP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	432.87481689453125	3	432.87536	1295.60425	0.56695	0.00024542	0.85089	0.00036833	1.4178	0.00061375	432.87570642953483	20.584	1.013	19.245	18.902	19.915	-1.3386					46	20	3	0	0	0	0.72477	1	82	82		18.531	0	1	78832			4260	1961	3300	3310	5571	5571					-0.031727319292485845
DISMRLHK	8	Unmodified	_DISMRLHK_					0	0	0		ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-1|MTCL2;ENST00000463491.1_1_20:35457204-35467793:-|nuORF;nc|ENSG00000149639|O94964-4|MTCL2	ENSG00000149639|ENST00000237536|SOGA1	ENSG00000149639|ENST00000237536|SOGA1	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.3053283691406	2	500.273844	998.533135	0.17635	8.8221E-05	4.4702	0.0022363	4.6466	0.0023246	500.27599058226025	110.47	1.091	109.32	108.82	109.91	-1.1444					25	20	2	0	0	0	0.028476	1	7949	7949		71.296	5.4925	1	11041			4261	5483	3301	3311	5572	5572					0.03380936148255387
DISRLFGILT	10	Unmodified	_DISRLFGILT_					0	0	0			REV__ENSG00000175324|ENST00000311351|LSM1	REV__ENSG00000175324|ENST00000311351|LSM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.8182983398438	2	567.829506	1133.64446	2.2034	0.0012511	-0.70417	-0.00039985	1.4992	0.00085128	567.8290830230937	78.528	0.90291	78.528	78.093	78.996	0					45	21	4	0	0	0	0.027145	1	7938	7938		24.519	0	1	2218400	+		4262	21892	3303	3312	5573	5573					0.0829827405721062
DISVHLVEV	9	Unmodified	_DISVHLVEV_					0	0	0		ENST00000474154.5_1_2:37458848-37468954:+|nuORF;ENSG00000003509|ENST00000002125|NDUFAF7	ENST00000474154.5_1_2:37458848-37468954:+|nuORF	ENST00000474154.5_1_2:37458848-37468954:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	505.77972412109375	2	505.779482	1009.54441	-1.5489	-0.00078341	1.055	0.00053361	-0.49389	-0.0002498	505.7800462360912	101.56	2.0773	100.8	100.27	102.35	-0.76401					114	41	4	0	0	0	0.14739	2	9312	9307;9312		85.359	3.0545	1	757390			4263	821	3304	3313	5574;5575	5575					0.040020367233978504
DISWEWAGLL	10	Unmodified	_DISWEWAGLL_					0	0	0			REV__nc|ENSG00000178803|P86434|ADORA2A-AS1	REV__nc|ENSG00000178803|P86434|ADORA2A-AS1	MULTI-SECPEP	OvCa9_classI_Rep2	2	594.828857421875	2	595.298039	1188.58152	-1.0674	-0.00063539	-1.2818	-0.00076305	-2.3491	-0.0013984	595.2970500984021	76.841	0.72784	75.052	74.688	75.416	-1.7894					23	13	2	0	0	0	0.02649	1	6360	6360		60.972	0	1	22150	+		4264	29029	3305	3314	5576	5576					-0.00522291730840152
DISYKLEETQ	10	Unmodified	_DISYKLEETQ_					0	0	0			REV__ENSG00000123213|ENST00000380985|NLN	REV__ENSG00000123213|ENST00000380985|NLN	MULTI-SECPEP	OvCa9_classI_Rep2	2	409.9046936035156	3	409.203076	1224.5874	0.75233	0.00030785	3.9693	0.0016243	4.7217	0.0019321	409.2044953270154	69.607	1.2006	66.987	66.715	67.916	-2.6203					63	23	5	0	0	0	0.027118	1	5509	5509		13.508	0	1	122480	+		4265	18631	3306	3315	5577	5577					-0.015912380098598078
DITLPGLIAL	10	Unmodified	_DITLPGLIAL_					0	0	0			REV__tr|A0A553SF94|A0A553SF94_NIACIBcr/CflAfamilyeffluxtransporterOS=NialliacirculansOX=1397GN=CEQ21_08445PE=3SV=1	REV__tr|A0A553SF94|A0A553SF94_NIACIBcr/CflAfamilyeffluxtransporterOS=NialliacirculansOX=1397GN=CEQ21_08445PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.3040771484375	2	513.3157	1024.61685	0.26766	0.00013739	2.4126	0.0012384	2.6803	0.0013758	513.3179408317715	103.4	0.57944	101.96	101.76	102.34	-1.4347					13	10	2	0	0	0	0.027839	1	7157	7157		71.296	0	1	12795	+		4266	29551	3307	3316	5578	5578					0.10552370796949617
DITMKLQY	8	Unmodified	_DITMKLQY_					0	0	0			REV__tr|A0A553SU90|A0A553SU90_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06575PE=4SV=1	REV__tr|A0A553SU90|A0A553SU90_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06575PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.272705078125	2	506.26261	1010.51067	1.0896	0.00055164	-1.4846	-0.00075157	-0.39493	-0.00019994	506.26160708369633	142.87	0.77975	142.87	142.59	143.37	0					25	15	3	0	0	0	0.028476	1	16724	16724		42.396	11.892	1	47166	+		4267	31051	3308	3317	5579	5579					0.0058329195995838745
DITYIKDRP	9	Unmodified	_DITYIKDRP_					0	0	0			REV__nc|ENSG00000183454|Q12879-2|GRIN2A	REV__nc|ENSG00000183454|Q12879-2|GRIN2A	MULTI-MSMS	OvCa9_classI_Rep3	3	560.804931640625	2	560.803488	1119.59242	0.74763	0.00041927	-0.19889	-0.00011154	0.54874	0.00030773	560.8032406363295	113.08	1.9194	112.01	111.66	113.58	-1.0753					84	37	3	0	0	0	0.68424	1	8305	8305		21.96	4.5949	1	455470	+		4268	22362	3309	3318	5580	5580					0.03741110643431966
DIVATVPTIIV	11	Unmodified	_DIVATVPTIIV_					0	0	0			REV__ENST00000505878.4_2_4:108955657-108955717:+|nuORF	REV__ENST00000505878.4_2_4:108955657-108955717:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	571.8065795898438	2	570.847364	1139.68018	-0.97982	-0.00055933	-1.7968	-0.0010257	-2.7766	-0.001585	570.8464369720978	90.637	0.76542	88.556	88.108	88.873	-2.0805					22	14	2	0	0	0	0.02557	1	5606	5606		24.519	0	1	21619	+		4269	26882	3310	3319	5581	5581					0.11592311514186804
DIVDSEILLND	11	Unmodified	_DIVDSEILLND_					0	0	0			REV__ENSG00000136169|ENST00000611815|SETDB2	REV__ENSG00000136169|ENST00000611815|SETDB2	MULTI-MSMS	OvCa99_classI_Rep5	1	623.3162841796875	2	623.314083	1244.61361	0.53547	0.00033377	-0.84123	-0.00052435	-0.30575	-0.00019058	623.3134307191178	140.37	0.66309	140.37	140.12	140.78	0					29	13	3	0	0	0	0.68391	1	16400	16400		19.104	0	1	147450	+		4270	19367	3311	3320	5582	5582					0.0010903116162808146
DIVGEAEPLS	10	Unmodified	_DIVGEAEPLS_					0	0	0		DDX53|p.N152Kfs*6|1|0.09|ENSG00000184735|chrX:23000512-23000513|-/G|frameshift_variant;ENSG00000184735|ENST00000327968|DDX53	DDX53|p.N152Kfs*6|1|0.09|ENSG00000184735|chrX:23000512-23000513|-/G|frameshift_variant	DDX53|p.N152Kfs*6|1|0.09|ENSG00000184735|chrX:23000512-23000513|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.774169921875	2	515.258579	1028.50261	0.37556	0.00019351	4.1947	0.0021614	4.5703	0.0023549	515.2608726979727	111.23	0.78917	109.66	109.2	109.99	-1.5787					19	14	2	0	0	0	0.026956	1	10199	10199		26.693	0	1	11149			4271	722	3312	3321	5583	5583					-0.010505637558026137
DIVKLGDIIKV	11	Unmodified	_DIVKLGDIIKV_					0	0	0		tr|A0A7D6VRE0|A0A7D6VRE0_9CLOTRNA-bindingtranscriptionalaccessoryproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19060PE=4SV=1	tr|A0A7D6VRE0|A0A7D6VRE0_9CLOTRNA-bindingtranscriptionalaccessoryproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19060PE=4SV=1	tr|A0A7D6VRE0|A0A7D6VRE0_9CLOTRNA-bindingtranscriptionalaccessoryproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19060PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	606.8824462890625	2	606.881739	1211.74892	1.2124	0.00073576	0.80901	0.00049097	2.0214	0.0012267	606.8821240150783	154.37	0.8045	154.37	154.07	154.88	0					44	15	4	0	0	0	0.68868	1	18078	18078		30.569	0.25114	1	194220			4272	34921	3313	3322	5584	5584					0.15151975813864738
DIVLQTLL	8	Unmodified	_DIVLQTLL_					0	0	0		nc|ENSG00000169446|Q8N4V1-2|MMGT1;ENSG00000169446|ENST00000305963|MMGT1	nc|ENSG00000169446|Q8N4V1-2|MMGT1	nc|ENSG00000169446|Q8N4V1-2|MMGT1	MULTI-SECPEP	OvCa9_classI_Rep3	3	456.7972106933594	2	457.781493	913.548434	0.39776	0.00018209	-0.23478	-0.00010748	0.16298	7.4611E-05	457.7813092734387	105	1.9272	103.65	103.36	105.29	-1.3482					56	36	2	0	0	0	0.028476	1	7357	7357		73.975	8.1716	1	285250			4273	15173	3314	3323	5585	5585					0.08820126217108282
DIVLREFQ	8	Unmodified	_DIVLREFQ_					0	0	0		tr|A0A7D6ZEU7|A0A7D6ZEU7_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15145PE=4SV=1	tr|A0A7D6ZEU7|A0A7D6ZEU7_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15145PE=4SV=1	tr|A0A7D6ZEU7|A0A7D6ZEU7_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15145PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.25604248046875	2	510.279649	1018.54475	-0.67806	-0.000346	2.1837	0.0011143	1.5056	0.00076829	510.2808182799654	103.81	1.674	101.69	100.75	102.43	-2.1192					54	31	4	0	0	0	0.028476	1	9280	9280		23.042	1.3402	1	106700			4274	35489	3315	3324	5586	5586					0.03621456443238458
DIVLREFQ	8	Unmodified	_DIVLREFQ_					0	0	0		tr|A0A7D6ZEU7|A0A7D6ZEU7_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15145PE=4SV=1	tr|A0A7D6ZEU7|A0A7D6ZEU7_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15145PE=4SV=1	tr|A0A7D6ZEU7|A0A7D6ZEU7_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15145PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	510.279649	1018.54475	-1.152	-0.00058785	2.1042	0.0010737	0.95219	0.00048588	510.28034792061896	102.4	1.2374	101.72	100.84	102.08	-0.68459	0.0061927	0.00072389	NaN	32.812	53	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86476			4275	35489	3315	3324							0.03621456443238458
DIVLREFQ	8	Unmodified	_DIVLREFQ_					0	0	0		tr|A0A7D6ZEU7|A0A7D6ZEU7_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15145PE=4SV=1	tr|A0A7D6ZEU7|A0A7D6ZEU7_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15145PE=4SV=1	tr|A0A7D6ZEU7|A0A7D6ZEU7_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15145PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	510.279649	1018.54475	-0.23996	-0.00012245	0.58377	0.00029789	0.34381	0.00017544	510.2798120282454	103.17	0.9944	101.72	101.08	102.07	-1.4427	0.011224	-0.0008278	NaN	32.812	45	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110850			4276	35489	3315	3324							0.03621456443238458
DIVLTENCLS	10	Unmodified	_DIVLTENCLS_					0	0	0		ENSG00000204740|ENST00000454679|MALRD1	ENSG00000204740|ENST00000454679|MALRD1	ENSG00000204740|ENST00000454679|MALRD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.23583984375	2	553.773539	1105.53253	0.87131	0.00048251	-0.12253	-6.7852E-05	0.74879	0.00041466	553.7730318958143	140.02	0.7045	140.02	139.61	140.31	0					24	14	2	0	0	0	0.02676	1	16372	16372		27.047	0	1	39520			4277	9027	3316	3325	5587	5587					-0.016019480821341858
DIVLVQLGDTR	11	Unmodified	_DIVLVQLGDTR_					0	0	0		ENSG00000185453|ENST00000614654|ZSWIM9	ENSG00000185453|ENST00000614654|ZSWIM9	ENSG00000185453|ENST00000614654|ZSWIM9	MULTI-SECPEP	OvCa99_classI_Rep5	1	615.8043212890625	2	614.848427	1227.6823	1.2488	0.00076784	-3.1331	-0.0019264	-1.8843	-0.0011586	615.3488447218251	146.08	0.39975	146.08	145.83	146.23	0					11	7	2	0	0	0	0.025508	1	17073	17073		34.087	8.0231	1	44512			4278	8254	3317	3326	5588	5588					0.07756740251988958
DIVPKSLSY	9	Unmodified	_DIVPKSLSY_					0	0	0			REV__tr|A0A553STR7|A0A553STR7_NIACICytoplasmicproteinOS=NialliacirculansOX=1397GN=CEQ21_05630PE=4SV=1	REV__tr|A0A553STR7|A0A553STR7_NIACICytoplasmicproteinOS=NialliacirculansOX=1397GN=CEQ21_05630PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	511.28271484375	2	511.281857	1020.54916	-0.80673	-0.00041247	0.19874	0.00010161	-0.60799	-0.00031086	511.282075128337	99.586	1.489	98.756	98.069	99.558	-0.83051					70	29	3	0	0	0	0.56889	1	9100	9100		35.618	2.1027	1	393670	+		4279	31002	3318	3327	5589	5589					0.03970920866140659
DIVVPVYL	8	Unmodified	_DIVVPVYL_					0	0	0		ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000488848.1_1_X:47102801-47104466:+|nuORF	ENST00000469080.5_1_X:47092634-47106681:+|nuORF	ENST00000469080.5_1_X:47092634-47106681:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	459.2463684082031	2	459.270761	916.52697	-0.35284	-0.00016205	-3.7177	-0.0017074	-4.0705	-0.0018695	459.268996000001	62.283	0.7382	58.825	58.57	59.309	-3.4577					25	14	2	0	0	0	0.028476	1	4301	4301		74.517	26.601	1	59011			4280	2230	3319	3328	5590	5590					0.06536741188369888
DIVVPVYL	8	Unmodified	_DIVVPVYL_					0	0	0		ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000488848.1_1_X:47102801-47104466:+|nuORF	ENST00000469080.5_1_X:47092634-47106681:+|nuORF	ENST00000469080.5_1_X:47092634-47106681:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	459.270761	916.52697	-0.14552	-6.6834E-05	-3.9845	-0.00183	-4.13	-0.0018968	459.2687696933121	58.716	0.44672	58.716	58.446	58.892	0	-0.097179	-0.0001517	NaN	74.517	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1238100			4281	2230	3319	3328							0.06536741188369888
DIVVPVYL	8	Unmodified	_DIVVPVYL_					0	0	0		ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000488848.1_1_X:47102801-47104466:+|nuORF	ENST00000469080.5_1_X:47092634-47106681:+|nuORF	ENST00000469080.5_1_X:47092634-47106681:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	459.270761	916.52697	-0.92245	-0.00042365	-3.5435	-0.0016274	-4.4659	-0.0020511	459.26915523170135	61.658	0.51706	58.899	58.62	59.137	-2.7593	0.085495	0.00025341	NaN	74.517	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17369			4282	2230	3319	3328							0.06536741188369888
DIWPPLPQL	9	Unmodified	_DIWPPLPQL_					0	0	0		ENST00000563591.5_1_16:28858025-28877416:+|nuORF	ENST00000563591.5_1_16:28858025-28877416:+|nuORF	ENST00000563591.5_1_16:28858025-28877416:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.33349609375	2	539.800217	1077.58588	0.84888	0.00045823	1.379	0.00074439	2.2279	0.0012026	539.800059676763	132.01	0.60248	132.01	131.76	132.36	0					28	12	3	0	0	0	0.027418	1	15324	15324		68.787	14.022	1	199310			4283	13787	3320	3329	5591	5591					0.05019217482708882
DIWVARKL	8	Unmodified	_DIWVARKL_					0	0	0			REV__nc|ENSG00000165078|Q8N4T0-2|CPA6	REV__nc|ENSG00000165078|Q8N4T0-2|CPA6	MULTI-MSMS	OvCa9_classI_Rep2	2	500.79833984375	2	500.800552	999.58655	-3.3891	-0.0016973	-0.88633	-0.00044387	-4.2754	-0.0021411	500.79997207948645	149.12	1.1552	148.89	148.52	149.67	-0.22696					61	22	4	0	0	0	0.74679	1	15104	15104		28.254	1.4582	1	177980	+		4284	21053	3321	3330	5592	5592					0.08674056922416185
DIYFKLVN	8	Unmodified	_DIYFKLVN_					0	0	0		nc|ENSG00000004846|Q2M3G0-1|ABCB5;ENSG00000004846|ENST00000404938|ABCB5	nc|ENSG00000004846|Q2M3G0-1|ABCB5	nc|ENSG00000004846|Q2M3G0-1|ABCB5	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.3238830566406	2	506.279118	1010.54368	-0.69842	-0.00035359	0.81511	0.00041267	0.11669	5.9078E-05	506.27926724805536	105.47	1.048	105.03	104.65	105.7	-0.43642					26	20	2	0	0	0	0.028476	1	9786	9786		16.473	0	1	33996			4285	834	3322	3331	5593	5593					0.03883242074334703
DIYSDFQTE	9	Unmodified	_DIYSDFQTE_					0	0	0		ENSG00000188782|ENST00000456354|CATSPER4;nc|ENSG00000188782|Q7RTX7-2|CATSPER4	ENSG00000188782|ENST00000456354|CATSPER4	ENSG00000188782|ENST00000456354|CATSPER4	MULTI-SECPEP	OvCa9_classI_Rep2	2	558.2410888671875	2	559.237844	1116.46113	1.6189	0.00090534	-4.2186	-0.0023592	-2.5997	-0.0014539	559.2349334099952	129.01	0.4953	128.78	128.67	129.17	-0.22696					11	9	2	0	0	0	0.027462	1	12673	12673		44.117	3.3386	1	8059.5			4286	8501	3323	3332	5594	5594					-0.092437445151063
DIYTDWETI	9	Unmodified	_DIYTDWETI_					0	0	0		tr|A0A553SN00|A0A553SN00_NIACIAcyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_23335PE=3SV=1	tr|A0A553SN00|A0A553SN00_NIACIAcyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_23335PE=3SV=1	tr|A0A553SN00|A0A553SN00_NIACIAcyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_23335PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	578.3074340820312	2	578.263862	1154.51317	0.58072	0.00033581	-0.29712	-0.00017181	0.2836	0.000164	578.2636433903468	123.89	0.77573	122.85	122.56	123.34	-1.0377					27	14	3	0	0	0	0.027455	1	9590	9590		42.396	0	1	70528			4287	33890	3324	3333	5595	5595					-0.05790581101382486
DKADYMPET	9	Unmodified	_DKADYMPET_					0	0	0		ENST00000375290.6_3_9:98215758-98232201:-|nuORF;PTCH1|p.S1176Yfs*8|1|0.05|ENSG00000185920|chr9:95449863-95449864|-/T|frameshift_variant;nc|ENSG00000185920|Q13635-4|PTCH1;nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;ENSG00000185920|ENST00000331920|PTCH1	ENST00000375290.6_3_9:98215758-98232201:-|nuORF	ENST00000375290.6_3_9:98215758-98232201:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	534.8251953125	2	535.228965	1068.44338	0.4464	0.00023893	3.2086	0.0017173	3.655	0.0019562	535.2308119829027	89.1	0.2953	86.969	86.798	87.093	-2.1309					7	5	2	0	0	0	0.027462	1	5467	5467		34.173	0	1	12104			4288	8300	3325	3334	5596	5596					-0.08810783041644754
DKAEEIPSF	9	Unmodified	_DKAEEIPSF_					0	0	0			REV__ENSG00000164061|ENST00000296452|BSN	REV__ENSG00000164061|ENST00000296452|BSN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.7760009765625	2	518.253297	1034.49204	-1.0383	-0.00053813	-4.2109	-0.0021823	-5.2493	-0.0027205	518.251425532838	69.837	0.43372	66.356	66.105	66.539	-3.4812					17	8	3	0	0	0	0.027462	1	5218	5218		33.922	6.0394	1	29107	+		4289	20930	3326	3335	5597	5597					-0.023825464102628757
DKAEKALNP	9	Unmodified	_DKAEKALNP_					0	0	0			REV__ENSG00000134250|ENST00000256646|NOTCH2	REV__ENSG00000134250|ENST00000256646|NOTCH2	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.7975158691406	2	493.269281	984.52401	-0.34578	-0.00017056	0.48293	0.00023821	0.13715	6.7651E-05	493.2693250188673	51.397	0.49863	51.397	51.248	51.747	0					16	11	2	0	0	0	0.027462	1	3947	3947		10.265	0	1	269910	+		4290	19188	3327	3336	5598	5598					0.03112866063565889
DKAFYTMIL	9	Unmodified	_DKAFYTMIL_					0	0	0			REV__tr|A0A553SK80|A0A553SK80_NIACIDelta-aminolevulinicaciddehydrataseOS=NialliacirculansOX=1397GN=hemBPE=3SV=1	REV__tr|A0A553SK80|A0A553SK80_NIACIDelta-aminolevulinicaciddehydrataseOS=NialliacirculansOX=1397GN=hemBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.3230590820312	2	551.286085	1100.55762	3.2148	0.0017723	-0.74788	-0.00041229	2.4669	0.00136	551.2854202577623	97.73	0.38933	97.73	97.522	97.912	0					11	8	2	0	0	0	0.027462	1	10764	10764		34.173	11.593	1	248340	+		4291	30091	3328	3337	5599	5599					0.011361515111047993
DKAHFTVENI	10	Unmodified	_DKAHFTVENI_					0	0	0			REV__nc|ENSG00000124721|Q96JB1-2|DNAH8	REV__nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.7932739257812	2	587.29857	1172.58259	2.1198	0.001245	3.0267	0.0017776	5.1465	0.0030226	587.3002992128671	106.64	1.0116	106.64	105.88	106.89	0					35	22	2	0	0	0	0.026867	1	11930	11930		42.864	5.7052	1	388070	+		4292	18702	3329	3338	5600	5600					0.003199226380502296
DKAIQGNIL	9	Unmodified	_DKAIQGNIL_					0	0	0			REV__ENSG00000159495|ENST00000452443|TGM7	REV__ENSG00000159495|ENST00000452443|TGM7	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.2919616699219	2	486.279649	970.544745	0.51644	0.00025113	-0.052811	-2.5681E-05	0.46363	0.00022545	486.2793095642551	82.579	1.0759	80.98	80.384	81.46	-1.5988					38	20	2	0	0	0	0.027433	1	6984	6984		74.255	2.3776	1	43777	+		4293	20618	3330	3339	5601	5601					0.05829456443234449
DKANQLSAL	9	Unmodified	_DKANQLSAL_					0	0	0			REV__nc|ENSG00000156030|Q6PJG2|MIDEAS	REV__nc|ENSG00000156030|Q6PJG2|MIDEAS	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.26226806640625	2	480.261456	958.50836	0.64666	0.00031057	-0.80676	-0.00038746	-0.1601	-7.6891E-05	480.2607886666068	68.412	1.3701	64.922	64.235	65.605	-3.4902					51	27	3	0	0	0	0.22621	1	5081	5081		71.877	3.0906	1	324810	+		4294	20460	3331	3340	5602	5602					0.027445795465155243
DKANQLSAL	9	Unmodified	_DKANQLSAL_					0	0	0			REV__nc|ENSG00000156030|Q6PJG2|MIDEAS	REV__nc|ENSG00000156030|Q6PJG2|MIDEAS	MULTI-MATCH	OvCa9_classI_Rep2	2		2	480.261456	958.50836	-1.0624	-0.00051025	1.1585	0.00055638	0.09604	4.6124E-05	480.2615700528862	67.649	1.4822	64.988	64.099	65.581	-2.661	0.032752	0.0012035	NaN	71.877	51	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88181	+		4295	20460	3331	3340							0.027445795465155243
DKANQLSAL	9	Unmodified	_DKANQLSAL_					0	0	0			REV__nc|ENSG00000156030|Q6PJG2|MIDEAS	REV__nc|ENSG00000156030|Q6PJG2|MIDEAS	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	480.261456	958.50836	0.64666	0.00031057	-0.80676	-0.00038746	-0.1601	-7.6891E-05	480.2607886666068	68.412	1.3701	64.922	64.235	65.605	-3.4902	-0.032752	-0.00068412	NaN	71.877	51	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	324810	+		4296	20460	3331	3340							0.027445795465155243
DKANSSIIN	9	Unmodified	_DKANSSIIN_					0	0	0			REV__nc|ENSG00000137812|Q8NG31-3|KNL1	REV__nc|ENSG00000137812|Q8NG31-3|KNL1	MULTI-SECPEP	OvCa9_classI_Rep2	2	480.7720947265625	2	481.251089	960.487624	-0.84273	-0.00040557	1.7144	0.00082506	0.87167	0.00041949	481.25181870014075	32.71	0.74205	30.001	29.778	30.52	-2.7097					21	14	2	0	0	0	0.027462	1	1086	1086		42.396	10.441	1	42194	+		4297	19480	3332	3341	5603	5603					0.005799891668630153
DKARAFPVL	9	Unmodified	_DKARAFPVL_					0	0	0			REV__ENSG00000142207|ENST00000382751|URB1	REV__ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	OvCa9_classI_Rep2	2	508.7978515625	2	508.798009	1015.58147	-0.073799	-3.7549E-05	-0.055959	-2.8472E-05	-0.12976	-6.602E-05	508.79781426148145	110.04	1.2366	109.86	109.56	110.8	-0.17236					63	24	4	0	0	0	0.40667	1	10361	10361		51.335	1.8939	1	341650	+		4298	19776	3333	3342	5604	5604					0.07429753059784616
DKATGKTLTKL	11	Unmodified	_DKATGKTLTKL_					0	0	0		tr|A0A553SRA0|A0A553SRA0_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00690PE=3SV=1	tr|A0A553SRA0|A0A553SRA0_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00690PE=3SV=1	tr|A0A553SRA0|A0A553SRA0_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00690PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.8106689453125	2	588.353345	1174.69214	0.12931	7.6082E-05	0.10901	6.4136E-05	0.23832	0.00014022	588.3533586401832	57.646	0.25324	57.646	57.522	57.775	0					9	5	2	0	0	0	0.02523	1	4864	4864		31.634	0	1	197680			4299	34240	3334	3343	5605	5605					0.11177928257370695
DKAYTKLTK	9	Unmodified	_DKAYTKLTK_					0	0	0			REV__tr|A0A7D6VT97|A0A7D6VT97_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_01990PE=4SV=1	REV__tr|A0A7D6VT97|A0A7D6VT97_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_01990PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	534.7778930664062	2	534.308406	1066.60226	0.13303	7.1078E-05	-2.089	-0.0011161	-1.9559	-0.0010451	534.8077269994137	75.556	0.76041	73.146	72.87	73.631	-2.4106					18	14	2	0	0	0	0.027455	1	3839	3839		26.693	4.1133	1	42465	+		4300	31584	3335	3344	5606	5606					0.07162298648768228
DKCMEEELL	9	Carbamidomethyl (C)	_DKC(Carbamidomethyl (C))MEEELL_	DKC(1)MEEELL		DKC(93)MEEELL		0	1	0		ENSG00000115267|ENST00000649979|IFIH1;nc|ENSG00000115267|Q9BYX4-2|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.8017578125	2	583.757032	1165.49951	-1.0761	-0.00062815	1.3265	0.00077433	0.2504	0.00014617	583.7581156926946	49.614	0.34986	49.614	49.418	49.768	0					12	7	2	0	0	0	0.027217	1	3695	3695		93.195	26.766	1	114320			4301	3077	3336	3345	5607	5607	28				-0.07661898196488437
DKCNTIIWGL	10	Unmodified	_DKCNTIIWGL_					0	0	0		nc|ENSG00000140995|Q6ZN54|DEF8;nc|ENSG00000140995|Q6ZN54-2|DEF8;ENST00000452760.2_1_17:20516367-20517318:+|nuORF;nc|ENSG00000140995|Q6ZN54-4|DEF8;nc|ENSG00000140995|Q6ZN54-6|DEF8;nc|ENSG00000140995|Q6ZN54-3|DEF8;ENSG00000140995|ENST00000563594|DEF8	nc|ENSG00000140995|Q6ZN54|DEF8	nc|ENSG00000140995|Q6ZN54|DEF8	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.8120727539062	2	581.799891	1161.58523	-0.69142	-0.00040227	-1.6722	-0.00097288	-2.3636	-0.0013751	581.7979159368007	49.031	0.56882	49.031	48.718	49.287	0					16	12	2	0	0	0	0.026606	1	3614	3614		62.107	5.3864	1	181150			4302	15061	3337	3346	5608	5608					0.010900547713390552
DKCSRKTL	8	Unmodified	_DKCSRKTL_					0	0	0		ENSG00000179632|ENST00000322428|MAF1	ENSG00000179632|ENST00000322428|MAF1	ENSG00000179632|ENST00000322428|MAF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.6100158691406	2	475.758027	949.5015	1.391	0.0006618	-3.0046	-0.0014294	-1.6135	-0.00076765	475.75649234037365	79.231	0.31456	79.231	79.037	79.352	0					11	7	2	0	0	0	0.028476	1	8087	8087		54.776	15.97	1	212970			4303	7837	3338	3347	5609	5609					0.02472943394309368
DKCVEVKAK	9	Unmodified	_DKCVEVKAK_					0	0	0			REV__MTSS1L-DGCR8|1|fusion	REV__MTSS1L-DGCR8|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.8014221191406	2	510.281334	1018.54812	-0.9147	-0.00046676	0.053284	2.719E-05	-0.86142	-0.00043957	510.28130712214636	66.447	0.3908	62.957	62.708	63.099	-3.4902					10	7	2	0	0	0	0.027462	1	4844	4844		29.15	11.785	1	54845	+		4304	18843	3339	3348	5610	5610					0.03958383225585749
DKCYVIELN	9	Unmodified	_DKCYVIELN_					0	0	0		nc|ENSG00000135916|Q9NQX7-2|ITM2C;ENSG00000135916|ENST00000326427|ITM2C	nc|ENSG00000135916|Q9NQX7-2|ITM2C	nc|ENSG00000135916|Q9NQX7-2|ITM2C	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.2676391601562	2	548.7708	1095.52705	2.7517	0.00151	1.6132	0.00088528	4.3649	0.0023953	548.7716354057878	89.998	0.46219	89.998	89.848	90.31	0					21	10	3	0	0	0	0.027462	1	9628	9628		20.947	4.4738	1	1652800			4305	4429	3340	3349	5611	5611					-0.01689626873940142
DKCYVIELN	9	Unmodified	_DKCYVIELN_					0	0	0		nc|ENSG00000135916|Q9NQX7-2|ITM2C;ENSG00000135916|ENST00000326427|ITM2C	nc|ENSG00000135916|Q9NQX7-2|ITM2C	nc|ENSG00000135916|Q9NQX7-2|ITM2C	MULTI-MATCH	OvCa9_classI_Rep2	2		2	548.7708	1095.52705	1.7303	0.00094952	-1.6894	-0.00092711	0.040831	2.2407E-05	548.7691571924319	90.879	1.0543	89.643	88.847	89.901	-1.2355	-0.17743	-0.002581	NaN	32.812	28	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24198			4306	4429	3340	3349							-0.01689626873940142
DKDFNAQLTK	10	Unmodified	_DKDFNAQLTK_					0	0	0		tr|A0A7D6VT18|A0A7D6VT18_9CLOTABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06265PE=3SV=1	tr|A0A7D6VT18|A0A7D6VT18_9CLOTABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06265PE=3SV=1	tr|A0A7D6VT18|A0A7D6VT18_9CLOTABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06265PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.8176879882812	2	590.303852	1178.59315	-0.06866	-4.0531E-05	-2.6444	-0.001561	-2.713	-0.0016015	590.3003706000535	71.11	0.19899	71.11	71.031	71.23	0					6	4	2	0	0	0	0.02676	1	6850	6850		33.922	0	1	131130			4307	35079	3341	3350	5612	5612					0.01099905292448966
DKDGVVAIF	9	Unmodified	_DKDGVVAIF_					0	0	0		tr|A0A7D7A311|A0A7D7A311_9CLOTBifunctionalproteinGlmUOS=ClostridiumintestinaleOX=36845GN=glmUPE=3SV=1	tr|A0A7D7A311|A0A7D7A311_9CLOTBifunctionalproteinGlmUOS=ClostridiumintestinaleOX=36845GN=glmUPE=3SV=1	tr|A0A7D7A311|A0A7D7A311_9CLOTBifunctionalproteinGlmUOS=ClostridiumintestinaleOX=36845GN=glmUPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	482.26123046875	2	482.260925	962.507297	-0.95193	-0.00045908	2.648	0.001277	1.6961	0.00081796	482.2615374307478	57.099	1.3883	54.307	53.584	54.972	-2.7921					48	27	3	0	0	0	0.3076	1	4045	4045		62.107	9.8082	1	151870			4308	36099	3342	3351	5613	5613					0.024543651776070874
DKDKNWFI	8	Unmodified	_DKDKNWFI_					0	0	0			REV__tr|A0A553SMW5|A0A553SMW5_NIACIPhosphatidylglycerollysyltransferaseOS=NialliacirculansOX=1397GN=mprFPE=3SV=1	REV__tr|A0A553SMW5|A0A553SMW5_NIACIPhosphatidylglycerollysyltransferaseOS=NialliacirculansOX=1397GN=mprFPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.8218994140625	2	533.271824	1064.5291	1.9554	0.0010428	4.0972	0.0021849	6.0526	0.0032277	533.2739925713356	137.77	0.80858	137.77	137.4	138.21	0					48	17	4	0	0	0	0.028476	1	16043	16043		50.025	11.218	1	658930	+		4309	30375	3343	3352	5614	5614					-0.0005883007381726202
DKDPSSPIN	9	Unmodified	_DKDPSSPIN_					0	0	0		ENST00000521853.2_1_11:111942369-111943787:-|nuORF	ENST00000521853.2_1_11:111942369-111943787:-|nuORF	ENST00000521853.2_1_11:111942369-111943787:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.30865478515625	2	486.735271	971.45599	-0.21257	-0.00010346	1.8509	0.00090087	1.6383	0.00079741	486.7360998651174	30.358	0.29666	30.358	30.186	30.483	0					7	5	2	0	0	0	0.027453	1	1159	1159		64.207	12.872	1	17714			4310	13131	3344	3353	5615	5615					-0.03088003587095045
DKDYMKPLLL	10	Oxidation (M)	_DKDYM(Oxidation (M))KPLLL_		DKDYM(1)KPLLL		DKDYM(80)KPLLL	0	0	1		nc|ENSG00000071073|Q9UM21-2|MGAT4A;ENSG00000071073|ENST00000393487|MGAT4A	nc|ENSG00000071073|Q9UM21-2|MGAT4A	nc|ENSG00000071073|Q9UM21-2|MGAT4A	MULTI-MSMS	OvCa9_classI_Rep3	3	626.3388671875	2	626.336307	1250.65806	2.0915	0.00131	1.2853	0.00080505	3.3769	0.002115	626.337004210225	123.71	1.9187	122.67	121.68	123.6	-1.0377					71	36	4	0	0	0	0.30325	1	9551	9551		80.455	6.4799	1	298190			4311	1445	3345	3354	5616	5616		52			0.04275763774103325
DKDYMKPLLL	10	Oxidation (M)	_DKDYM(Oxidation (M))KPLLL_		DKDYM(1)KPLLL		DKDYM(43)KPLLL	0	0	1		nc|ENSG00000071073|Q9UM21-2|MGAT4A;ENSG00000071073|ENST00000393487|MGAT4A	nc|ENSG00000071073|Q9UM21-2|MGAT4A	nc|ENSG00000071073|Q9UM21-2|MGAT4A	MULTI-MSMS	OvCa9_classI_Rep4_	4	626.3380126953125	2	626.336307	1250.65806	-0.57445	-0.0003598	3.6196	0.0022671	3.0451	0.0019073	626.3384917976218	124.05	1.1637	122.66	122.27	123.44	-1.3908					61	22	4	0	0	0	0.59317	1	11774	11774		42.864	6.4175	1	304030			4312	1445	3345	3354	5617	5617		52			0.04275763774103325
DKDYTDESE	9	Unmodified	_DKDYTDESE_					0	0	0		ENSG00000134343|ENST00000256737|ANO3	ENSG00000134343|ENST00000256737|ANO3	ENSG00000134343|ENST00000256737|ANO3	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3026123046875	2	551.214566	1100.41458	1.1863	0.00065391	1.8519	0.0010208	3.0382	0.0016747	551.2154777410053	115.23	0.5131	115.23	114.98	115.49	0					15	10	2	0	0	0	0.027462	1	13155	13155		34.173	0	1	124460			4313	4288	3346	3355	5618	5618					-0.13161229137085684
DKECLYQI	8	Unmodified	_DKECLYQI_					0	0	0			REV__ENSG00000165899|ENST00000547103|OTOGL	REV__ENSG00000165899|ENST00000547103|OTOGL	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.8122863769531	2	506.244418	1010.47428	-1.0988	-0.00055627	-2.0533	-0.0010395	-3.1522	-0.0015958	506.2429472344436	90.208	1.4345	88.127	87.439	88.873	-2.0805					72	27	4	0	0	0	0.028476	1	5524	5524		56.721	21.103	1	120470	+		4314	21135	3347	3356	5619	5619					-0.030535849367538503
DKEELRNQL	9	Unmodified	_DKEELRNQL_					0	0	0		nc|ENSG00000173588|Q9Y592-2|CEP83;CEP83|p.N627Tfs*18|1|0.37|ENSG00000173588|chr12:94310039-94310040|-/AACATCTGGCAAGGAAATGCTGACCACTGTAGCAG|frameshift_variant;ENSG00000173588|ENST00000397809|CEP83	nc|ENSG00000173588|Q9Y592-2|CEP83	nc|ENSG00000173588|Q9Y592-2|CEP83	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.3409423828125	2	572.801477	1143.5884	0.0025053	1.435E-06	0.16361	9.3714E-05	0.16611	9.5149E-05	572.8014723676349	62.795	0.59837	62.795	62.581	63.179	0					25	14	3	0	0	0	0.027462	1	5636	5636		40.778	1.5253	1	1347000			4315	225	3348	3357	5620	5620					0.0223502114972689
DKEFLWPL	8	Unmodified	_DKEFLWPL_					0	0	0			REV__ENSG00000135763|ENST00000258243|URB2	REV__ENSG00000135763|ENST00000258243|URB2	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.292724609375	2	524.279118	1046.54368	0.24674	0.00012936	-3.01	-0.0015781	-2.7633	-0.0014487	524.7795238292891	64.762	0.31683	62.037	61.864	62.181	-2.7245					9	5	2	0	0	0	0.028476	1	4945	4945		24.203	3.2558	1	5492.8	+		4316	19320	3349	3358	5621	5621					0.022272420743320254
DKEIKDVK	8	Unmodified	_DKEIKDVK_					0	0	0		nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2;nc|ENSG00000153071|P98082-2|DAB2;ENSG00000175161|ENST00000383699|CADM2;nc|ENSG00000175161|Q8N3J6|CADM2;nc|ENSG00000175161|Q8N3J6-3|CADM2;nc|ENSG00000175161|Q8N3J6-4|CADM2;nc|ENSG00000175161|Q8N3J6-5|CADM2	nc|ENSG00000153071|P98082-3|DAB2;ENSG00000175161|ENST00000383699|CADM2	nc|ENSG00000153071|P98082-3|DAB2	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.7792053222656	2	487.779482	973.544411	0.07398	3.6086E-05	-0.088386	-4.3113E-05	-0.014407	-7.0274E-06	487.77931278991065	46.347	0.52226	46.347	46.154	46.676	0					18	11	2	0	0	0	0.028476	1	3251	3251		47.657	3.5405	1	505520			4317	5659;7520	3350	3359	5622	5622					0.05658036723366422
DKEIYLRLL	9	Unmodified	_DKEIYLRLL_					0	0	0			REV__tr|A0A7D6VRF9|A0A7D6VRF9_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_06815PE=4SV=1	REV__tr|A0A7D6VRF9|A0A7D6VRF9_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_06815PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	581.846923828125	2	581.845156	1161.67576	1.4232	0.00082806	-0.1024	-5.9579E-05	1.3208	0.00076848	581.845004436499	117.15	0.88613	117.15	116.91	117.79	0					39	18	3	0	0	0	0.38969	1	13429	13429		52.937	1.6012	1	1072000	+		4318	31413	3351	3360	5623	5623					0.10138847091275238
DKEKKKKE	8	Unmodified	_DKEKKKKE_					0	0	0		ENST00000591745.1_1_19:2328269-2328565:-|nuORF;ENSG00000130332|ENST00000252622|LSM7;ENSG00000198515|ENST00000514170|CNGA1	ENST00000591745.1_1_19:2328269-2328565:-|nuORF	ENST00000591745.1_1_19:2328269-2328565:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.8123168945312	2	516.806031	1031.59751	-0.3741	-0.00019334	-0.74328	-0.00038413	-1.1174	-0.00057747	516.8055505655294	56.249	0.75817	52.955	52.769	53.527	-3.2944					27	14	3	0	0	0	0.028476	1	3652	3652		37.159	0	1	62211			4319	3978	3352	3361	5624	5624					0.08297414506046152
DKELEVPF	8	Unmodified	_DKELEVPF_					0	0	0			REV__nc|ENSG00000158528|Q9ULJ8|PPP1R9A	REV__nc|ENSG00000158528|Q9ULJ8|PPP1R9A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	488.813232421875	2	488.752933	975.491313	-0.14921	-7.2927E-05	3.6907	0.0018038	3.5415	0.0017309	488.75486673491775	94.73	0.45071	92.261	92.01	92.46	-2.4685					13	8	2	0	0	0	0.028476	1	8325	8325		12.207	0	1	11215	+		4320	20570	3353	3362	5625	5625					0.002586589407201245
DKELLHELL	9	Unmodified	_DKELLHELL_					0	0	0			REV__nc|ENSG00000106144|P42575-2|CASP2;REV__ENST00000481483.1_1_7:142988711-142991459:+|nuORF	REV__ENST00000481483.1_1_7:142988711-142991459:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.3228759765625	2	555.313689	1108.61282	-0.27171	-0.00015088	-0.35519	-0.00019724	-0.62689	-0.00034812	555.3135531221984	51.226	0.44932	48.052	47.922	48.372	-3.1734					15	8	3	0	0	0	0.027418	1	3023	3023		49.442	0	1	21179	+		4321	17781;26478	3354	3363	5626	5626					0.062862813032325
DKELLICPPV	10	Unmodified	_DKELLICPPV_					0	0	0		nc|ENSG00000091157|Q9Y4E6-2|WDR7;ENSG00000091157|ENST00000254442|WDR7	nc|ENSG00000091157|Q9Y4E6-2|WDR7	nc|ENSG00000091157|Q9Y4E6-2|WDR7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.80712890625	2	563.812467	1125.61038	0.82423	0.00046471	-3.505	-0.0019761	-2.6807	-0.0015114	563.8101913781253	91.609	0.96233	89.067	88.605	89.567	-2.5425					21	18	2	0	0	0	0.026826	1	7894	7894		29.17	7.2102	1	31707			4322	1867	3355	3364	5627	5627					0.052601095739191805
DKEMLMYIE	9	Unmodified	_DKEMLMYIE_					0	0	0			REV__ENSG00000146267|ENST00000389677|FAXC	REV__ENSG00000146267|ENST00000389677|FAXC	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.3805541992188	2	586.272318	1170.53008	0.24205	0.00014191	-1.3581	-0.00079622	-1.1161	-0.00065432	586.271069108966	162.35	1.114	162.35	161.41	162.53	0					35	21	3	0	0	0	0.027455	1	19017	19017		34.173	0	1	45455	+		4323	20004	3356	3365	5628	5628					-0.04836119811420758
DKEQCPPL	8	Unmodified	_DKEQCPPL_					0	0	0			REV__ENSG00000164659|ENST00000450689|ELAPOR2	REV__ENSG00000164659|ENST00000450689|ELAPOR2	MULTI-SECPEP	OvCa9_classI_Rep3	3	465.2646789550781	2	465.223485	928.432418	-0.68117	-0.0003169	-4.4373	-0.0020643	-5.1185	-0.0023812	465.22120358531066	95.217	0.25311	93.321	93.161	93.414	-1.8956					6	4	2	0	0	0	0.028476	1	6197	6197		40.778	8.8233	1	9498.7	+		4324	21010	3357	3366	5629	5629					-0.03466140625266689
DKEQLLLL	8	Unmodified	_DKEQLLLL_					0	0	0			REV__nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	REV__nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	MULTI-MSMS	OvCa99_classI_Rep5	1	486.293212890625	2	486.292225	970.569897	1.8181	0.00088411	0.26035	0.00012661	2.0784	0.0010107	486.2922784489875	134.34	3.4861	134.34	133.72	137.21	0					179	74	5	0	0	0	0.38598	1	15788	15788		90.777	0	1	13018000	+		4325	17689	3358	3367	5630	5630					0.08343511245811897
DKEREKNKGR	10	Unmodified	_DKEREKNKGR_					0	0	0			REV__ENSG00000005108|ENST00000423059|THSD7A	REV__ENSG00000005108|ENST00000423059|THSD7A	MULTI-SECPEP	OvCa9_classI_Rep2	2	420.9277038574219	3	420.565342	1258.6742	-0.26221	-0.00011028	1.3573	0.00057082	1.0951	0.00046054	420.56560872651636	69.404	0.60002	66.784	66.515	67.115	-2.6203					15	11	2	0	0	0	0.026881	1	5489	5489		37.508	4.4688	1	17671	+		4326	16392	3359	3368	5631	5631					0.05520606055210919
DKETAIFVNN	10	Unmodified	_DKETAIFVNN_					0	0	0			REV__tr|A0A7D7A118|A0A7D7A118_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13565PE=4SV=1	REV__tr|A0A7D7A118|A0A7D7A118_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13565PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	574.8375244140625	2	575.790578	1149.5666	-1.3476	-0.00077592	2.9095	0.0016753	1.5619	0.00089934	575.7909820231104	90.695	0.46041	88.615	88.413	88.873	-2.0805					17	8	3	0	0	0	0.026656	1	5662	5662		56.434	18.622	1	19886	+		4327	32465	3360	3369	5632	5632					-0.002197835988454244
DKETISENL	9	Unmodified	_DKETISENL_					0	0	0		nc|ENSG00000163535|Q562F6-2|SGO2;ENSG00000163535|ENST00000357799|SGO2	nc|ENSG00000163535|Q562F6-2|SGO2	nc|ENSG00000163535|Q562F6-2|SGO2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.8157348632812	2	524.761486	1047.50842	-0.3024	-0.00015869	3.175	0.0016661	2.8726	0.0015074	524.7635718277162	123.1	0.79294	121.73	121.46	122.25	-1.3666					39	15	3	0	0	0	0.027446	1	11659	11659		51.193	0	1	44215			4328	6322	3361	3370	5633	5633					-0.013434652441446815
DKEVNLEQV	9	Unmodified	_DKEVNLEQV_					0	0	0		nc|ENSG00000182771|Q9ULK0-2|GRID1;ENSG00000182771|ENST00000327946|GRID1	nc|ENSG00000182771|Q9ULK0-2|GRID1	nc|ENSG00000182771|Q9ULK0-2|GRID1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.7694091796875	2	537.277303	1072.54005	-0.29171	-0.00015673	2.6687	0.0014338	2.3769	0.0012771	537.2785277386347	35.822	0.83063	35.822	35.566	36.397	0					38	17	3	0	0	0	0.027462	1	1906	1906		51.193	5.2204	1	1805800			4329	8023	3362	3371	5634	5634					0.006685275098107013
DKFAKCCLH	9	Unmodified	_DKFAKCCLH_					0	0	0		ENST00000490738.5_1_1:6931897-6932053:+|nuORF	ENST00000490738.5_1_1:6931897-6932053:+|nuORF	ENST00000490738.5_1_1:6931897-6932053:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.2675170898438	2	532.75443	1063.49431	-1.1593	-0.0006176	3.3506	0.001785	2.1913	0.0011674	532.7563846068613	56.24	0.75675	52.945	52.617	53.374	-3.2944					19	14	2	0	0	0	0.027462	1	3569	3569		24.203	3.7209	1	46068			4330	12703	3363	3372	5635	5635					-0.03490112477788898
DKFGLNAII	9	Unmodified	_DKFGLNAII_					0	0	0			REV__ENSG00000152578|ENST00000282499|GRIA4	REV__ENSG00000152578|ENST00000282499|GRIA4	MULTI-MSMS	OvCa99_classI_Rep5	1	495.7860107421875	2	495.784567	989.554582	1.8631	0.00092369	0.26021	0.00012901	2.1233	0.0010527	495.7845117559012	102.17	1.0266	102.17	101.82	102.85	0					46	23	3	0	0	0	0.10363	1	11402	11402		96.19	2.184	1	2445100	+		4331	20293	3364	3373	5636	5636					0.059386444485994616
DKFIEKIIAT	10	Unmodified	_DKFIEKIIAT_					0	0	0			REV__nc|ENSG00000140471|Q8NG48-3|LINS1	REV__nc|ENSG00000140471|Q8NG48-3|LINS1	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3429565429688	2	589.344989	1176.67542	-3.0463	-0.0017953	-0.38122	-0.00022467	-3.4276	-0.00202	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.75313	1	14841	14841		24.519	0.99649	1	272220	+		4332	19679	3365	3374	5637	5637					0.09415427371436635
DKFSMKLLY	9	Unmodified	_DKFSMKLLY_					0	0	0			REV__ENST00000371322.9_2_X:119660227-119660401:-|nuORF	REV__ENST00000371322.9_2_X:119660227-119660401:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	572.28076171875	2	572.807185	1143.59982	-1.6164	-0.00092589	-1.9507	-0.0011174	-3.5671	-0.0020433	572.8056684763736	99.446	0.29875	98.615	98.467	98.766	-0.83052					8	5	2	0	0	0	0.027462	1	9053	9053		14.865	0	1	8334.4	+		4333	24980	3366	3375	5638	5638					0.0337612691951108
DKFVAEHTSLP	11	Unmodified	_DKFVAEHTSLP_					0	0	0		ENST00000565846.2_1_15:56485023-56485380:-|nuORF	ENST00000565846.2_1_15:56485023-56485380:-|nuORF	ENST00000565846.2_1_15:56485023-56485380:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	621.3707885742188	2	622.319502	1242.62445	0.8749	0.00054446	-2.8347	-0.0017641	-1.9598	-0.0012196	622.3178467754014	124.42	0.83061	124.42	124.19	125.02	0					31	17	3	0	0	0	0.025332	1	14339	14339		41.427	25.42	1	188110			4334	13831	3367	3376	5639	5639					0.01284478326556382
DKGKRRNL	8	Unmodified	_DKGKRRNL_					0	0	0		ENST00000494624.1_1_X:100872054-100872120:-|nuORF	ENST00000494624.1_1_X:100872054-100872120:-|nuORF	ENST00000494624.1_1_X:100872054-100872120:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.7688903808594	2	493.796332	985.578111	2.5698	0.001269	1.3204	0.000652	3.8902	0.001921	493.797115495166	90.316	0.40121	90.316	90.06	90.462	0					21	9	3	0	0	0	0.028476	1	9654	9654		38.806	12.113	1	525330			4335	12759	3368	3377	5640	5640					0.08474503005800216
DKGLLTFVDH	10	Unmodified	_DKGLLTFVDH_					0	0	0		ENSG00000108797|ENST00000264638|CNTNAP1	ENSG00000108797|ENST00000264638|CNTNAP1	ENSG00000108797|ENST00000264638|CNTNAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	573.3067626953125	2	572.803488	1143.59242	2.4474	0.0014019	4.4184	0.0025309	6.8657	0.0039327	572.8059592030855	75.349	0.80244	75.349	74.962	75.764	0					31	19	2	0	0	0	0.32926	1	7470	7470		77.318	7.69	1	7608000			4336	2675	3369	3378	5641	5641					0.02637110643422602
DKGNKNKLK	9	Unmodified	_DKGNKNKLK_					0	0	0			REV__tr|A0A7D6VTD8|A0A7D6VTD8_9CLOTDihydrofolatereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08515PE=4SV=1	REV__tr|A0A7D6VTD8|A0A7D6VTD8_9CLOTDihydrofolatereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08515PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.292724609375	2	522.811648	1043.60874	1.2071	0.00063108	1.4832	0.00077541	2.6902	0.0014065	522.8125303046621	65.515	2.328	62.819	61.786	64.114	-2.6958					99	45	4	0	0	0	0.027462	1	4945	4945		18.262	3.3972	1	220830	+		4337	31598	3370	3379	5642	5642					0.08868236600164892
DKGRRSLN	8	Unmodified	_DKGRRSLN_					0	0	0			REV__ENST00000553275.1_3_12:57503824-57504947:-|nuORF	REV__ENST00000553275.1_3_12:57503824-57504947:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.7752685546875	2	473.264865	944.515176	1.404	0.00066446	3.9379	0.0018636	5.3419	0.0025281	473.2668460558102	79.222	0.27299	79.222	79.079	79.352	0					9	6	2	0	0	0	0.028476	1	8047	8047		44.117	0	1	240430	+		4338	27508	3371	3380	5643	5643					0.04069937217752795
DKGSVGLLTD	10	Unmodified	_DKGSVGLLTD_					0	0	0		tr|A0A553SLK6|A0A553SLK6_NIACIFMNdependentNADH:quinoneoxidoreductaseOS=NialliacirculansOX=1397GN=azoRPE=3SV=1	tr|A0A553SLK6|A0A553SLK6_NIACIFMNdependentNADH:quinoneoxidoreductaseOS=NialliacirculansOX=1397GN=azoRPE=3SV=1	tr|A0A553SLK6|A0A553SLK6_NIACIFMNdependentNADH:quinoneoxidoreductaseOS=NialliacirculansOX=1397GN=azoRPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.7975158691406	2	502.766571	1003.51859	1.4678	0.00073798	-4.4402	-0.0022324	-2.9723	-0.0014944	502.7642303173537	79.358	0.95253	79.358	79.079	80.031	0					30	17	2	0	0	0	0.026465	1	8098	8098		72.879	0	1	3291800			4339	33734	3372	3381	5644	5644					0.016971424811004
DKHIYHHD	8	Unmodified	_DKHIYHHD_					0	0	0		tr|A0A553SLV2|A0A553SLV2_NIACISerine/threonineproteinkinaseOS=NialliacirculansOX=1397GN=CEQ21_21330PE=3SV=1	tr|A0A553SLV2|A0A553SLV2_NIACISerine/threonineproteinkinaseOS=NialliacirculansOX=1397GN=CEQ21_21330PE=3SV=1	tr|A0A553SLV2|A0A553SLV2_NIACISerine/threonineproteinkinaseOS=NialliacirculansOX=1397GN=CEQ21_21330PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	532.7469482421875	2	532.749047	1063.48354	-0.30429	-0.00016211	-3.546	-0.0018891	-3.8503	-0.0020513	532.7470556275259	23.672	0.28925	23.672	23.547	23.836	0					14	5	3	0	0	0	0.7549	1	360	360		24.203	1.1603	1	170070			4340	33768	3373	3382	5645	5645					-0.04566055536179192
DKHKLRKSLK	10	Unmodified	_DKHKLRKSLK_					0	0	0			REV__ENSG00000100249|ENST00000216071|C22orf31	REV__ENSG00000100249|ENST00000216071|C22orf31	MULTI-SECPEP	OvCa9_classI_Rep4_	4	417.9065856933594	3	418.266456	1251.77754	-0.77655	-0.0003248	-0.20722	-8.6672E-05	-0.98376	-0.00041148	418.2665848192884	51.391	0.24809	48.217	48.123	48.372	-3.1734					6	4	2	0	0	0	0.026942	1	3032	3032		26.063	0	1	18686	+		4341	17387	3374	3383	5646	5646					0.16172138233696387
DKHLVKQVI	9	Unmodified	_DKHLVKQVI_					0	0	0			REV__nc|ENSG00000125247|Q5T4D3-2|TMTC4	REV__nc|ENSG00000125247|Q5T4D3-2|TMTC4	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3300170898438	2	540.332216	1078.64988	-1.5762	-0.00085169	-2.2598	-0.001221	-3.836	-0.0020727	540.3309156564876	138.68	4.2384	138.45	137.13	141.37	-0.22697					227	86	3	0	0	0	0.61365	1	13744	13744		30.318	2.4355	1	66382	+		4342	18715	3375	3384	5647	5647					0.11369997639667417
DKHVRPIQF	9	Unmodified	_DKHVRPIQF_					0	0	0		nc|ENSG00000101977|P10911-6|MCF2;nc|ENSG00000101977|P10911-2|MCF2;nc|ENSG00000101977|P10911|MCF2;nc|ENSG00000101977|P10911-4|MCF2;nc|ENSG00000101977|P10911-3|MCF2;ENSG00000101977|ENST00000519895|MCF2	nc|ENSG00000101977|P10911-6|MCF2	nc|ENSG00000101977|P10911-6|MCF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.7578125	2	570.31964	1138.62473	-0.20727	-0.00011821	-1.0699	-0.0006102	-1.2772	-0.00072841	570.318838665568	61.12	0.38784	61.12	60.901	61.289	0					15	8	2	0	0	0	0.027462	1	5359	5359		15.642	0	1	178430			4343	2212	3376	3385	5648	5648					0.06095942837077928
DKIAELEAEGI	11	Unmodified	_DKIAELEAEGI_					0	0	0		tr|A0A553STZ0|A0A553STZ0_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_05985PE=3SV=1	tr|A0A553STZ0|A0A553STZ0_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_05985PE=3SV=1	tr|A0A553STZ0|A0A553STZ0_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_05985PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.33154296875	2	594.311343	1186.60813	-0.94894	-0.00056396	-0.17773	-0.00010563	-1.1267	-0.00066959	594.3111146490145	64.232	0.32427	64.232	64.051	64.375	0					10	7	2	0	0	0	0.025701	1	5825	5825		22.58	9.7679	1	119800			4344	34552	3377	3386	5649	5649					0.02229352369818116
DKIANDATTQ	10	Unmodified	_DKIANDATTQ_					0	0	0		tr|A0A553SU77|A0A553SU77_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_06495PE=3SV=1	tr|A0A553SU77|A0A553SU77_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_06495PE=3SV=1	tr|A0A553SU77|A0A553SU77_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_06495PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.8134765625	2	538.76456	1075.51457	-0.078225	-4.2145E-05	-0.053581	-2.8868E-05	-0.13181	-7.1012E-05	538.7645861276925	58.526	0.57134	58.526	58.28	58.852	0					30	13	3	0	0	0	0.026968	1	5008	5008		11.636	3.4008	1	1069800			4345	34577	3378	3387	5650	5650					-0.020169470126347733
DKICFFAFG	9	Unmodified	_DKICFFAFG_					0	0	0		ENSG00000269113|ENST00000606738|TRABD2B	ENSG00000269113|ENST00000606738|TRABD2B	ENSG00000269113|ENST00000606738|TRABD2B	MULTI-SECPEP	OvCa9_classI_Rep3	3	524.8055419921875	2	524.252046	1046.48954	-1.5569	-0.00081619	0.77869	0.00040823	-0.77818	-0.00040796	524.2526498652257	93.398	0.75645	91.437	91.178	91.935	-1.9617					23	14	2	0	0	0	0.027456	1	5951	5951		38.806	8.4884	1	33063			4346	9540	3379	3388	5651	5651					-0.03184673348914657
DKICFFAFG	9	Unmodified	_DKICFFAFG_					0	0	0		ENSG00000269113|ENST00000606738|TRABD2B	ENSG00000269113|ENST00000606738|TRABD2B	ENSG00000269113|ENST00000606738|TRABD2B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	524.252046	1046.48954	0.35987	0.00018867	-0.48402	-0.00025375	-0.12414	-6.5083E-05	524.2520592659038	92.915	0.45578	91.747	91.498	91.953	-1.168	0.15496	-0.00079273	NaN	38.806	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13054			4347	9540	3379	3388							-0.03184673348914657
DKIDPFILIP	10	Unmodified	_DKIDPFILIP_					0	0	0		tr|A0A7D6ZG44|A0A7D6ZG44_9CLOTTnsAendonucleaseN-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20775PE=4SV=1	tr|A0A7D6ZG44|A0A7D6ZG44_9CLOTTnsAendonucleaseN-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20775PE=4SV=1	tr|A0A7D6ZG44|A0A7D6ZG44_9CLOTTnsAendonucleaseN-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20775PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.30615234375	2	585.842082	1169.66961	2.6619	0.0015595	-4.1445	-0.002428	-1.4826	-0.00086856	585.8397307647163	116.01	0.82735	116.01	115.68	116.51	0					34	17	3	0	0	0	0.026582	1	13303	13303		51.335	0	1	649970			4348	35534	3380	3389	5652	5652					0.09156328859762652
DKIEESKIL	9	Unmodified	_DKIEESKIL_					0	0	0			REV__nc|ENSG00000065613|Q9H2G2-2|SLK	REV__nc|ENSG00000065613|Q9H2G2-2|SLK	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.8074340820312	2	537.805697	1073.59684	-0.68486	-0.00036832	0.78428	0.00042179	0.099413	5.3465E-05	537.8060562317257	75.345	1.6274	72.114	71.726	73.353	-3.2308					84	33	4	0	0	0	0.2422	1	5919	5919		69.628	11.398	1	776300	+		4349	16799	3381	3390	5653	5653					0.06298575066330159
DKIESDIVI	9	Unmodified	_DKIESDIVI_					0	0	0			REV__nc|ENSG00000174197|Q8IWI9-3|MGA	REV__nc|ENSG00000174197|Q8IWI9-3|MGA	MULTI-MSMS	OvCa9_classI_Rep2	2	516.2852172851562	2	516.284597	1030.55464	-0.48899	-0.00025246	1.2646	0.0006529	0.77562	0.00040044	516.285153684191	57.372	1.6977	54.58	54.03	55.728	-2.792					82	33	3	0	0	0	0.33652	1	4060	4060		58.782	5.4305	1	519060	+		4350	29011	3382	3391	5654	5654					0.040585996579466155
DKIGRDGLL	9	Unmodified	_DKIGRDGLL_					0	0	0			REV__ENSG00000183747|ENST00000573854|ACSM2A	REV__ENSG00000183747|ENST00000573854|ACSM2A	MULTI-MSMS	OvCa9_classI_Rep2	2	493.7868957519531	2	493.785099	985.555644	0.62156	0.00030691	2.6882	0.0013274	3.3098	0.0016343	493.78628375291737	96.81	1.6281	95.851	95.082	96.711	-0.95857					66	32	4	0	0	0	0.42576	1	8749	8749		49.536	1.6204	1	367800	+		4351	16824	3383	3392	5655	5655					0.06228858817530636
DKIHAGDMITI	11	Unmodified	_DKIHAGDMITI_					0	0	0		ENST00000429864.1_1_X:127575186-127575687:+|nuORF	ENST00000429864.1_1_X:127575186-127575687:+|nuORF	ENST00000429864.1_1_X:127575186-127575687:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	607.3148193359375	2	607.315906	1212.61726	-0.66897	-0.00040628	-2.3581	-0.0014321	-3.0271	-0.0018384	607.3143684506753	105.84	1.7433	105.4	104.95	106.69	-0.43642					110	34	4	0	0	0	0.4744	2	9900	9882;9900		54.722	11.858	1	513880			4352	11782	3384	3393	5656;5657	5657					0.019454224544915633
DKILEPVACV	10	Unmodified	_DKILEPVACV_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;RHEB-MLL3|1|fusion	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.7969970703125	2	543.796817	1085.57908	-2.58	-0.001403	-1.4903	-0.00081042	-4.0703	-0.0022134	543.795957768216	108.22	2.6138	106.49	106.17	108.79	-1.7256					109	50	5	0	0	0	0.42962	1	9984	9984		64.207	0.67341	1	2628600			4353	1222	3385	3394	5658	5658					0.03971536539825138
DKILGKYDV	9	Unmodified	_DKILGKYDV_					0	0	0			REV__tr|A0A553SJA5|A0A553SJA5_NIACIPyruvatekinaseOS=NialliacirculansOX=1397GN=pykPE=3SV=1	REV__tr|A0A553SJA5|A0A553SJA5_NIACIPyruvatekinaseOS=NialliacirculansOX=1397GN=pykPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.7789306640625	2	525.795132	1049.57571	-1.2537	-0.00065921	-1.658	-0.00087175	-2.9117	-0.001531	525.794156211797	52.978	0.54613	49.77	49.602	50.149	-3.208					15	10	2	0	0	0	0.027462	1	3242	3242		24.519	6.2571	1	23943	+		4354	29984	3386	3395	5659	5659					0.05290609757457787
DKILVFSQSL	10	Unmodified	_DKILVFSQSL_					0	0	0		ENSG00000164080|ENST00000684192|RAD54L2;ENST00000461680.1_1_3:51673299-51697433:+|nuORF;ENST00000487093.5_1_3:51669772-51697433:+|nuORF	ENSG00000164080|ENST00000684192|RAD54L2	ENSG00000164080|ENST00000684192|RAD54L2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.311279296875	2	575.329339	1148.64412	-1.5809	-0.00090953	2.1626	0.0012442	0.58176	0.00033471	575.330785104627	100.39	0.77727	98.12	97.875	98.652	-2.2665					19	14	2	0	0	0	0.026464	1	8968	8968		60.118	0	1	26107			4355	6404	3387	3396	5660	5660					0.07574854337326542
DKIPTFAR	8	Unmodified	_DKIPTFAR_					0	0	0			REV__tr|A0A553SGS9|A0A553SGS9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=dcuSPE=4SV=1	REV__tr|A0A553SGS9|A0A553SGS9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=dcuSPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.2930908203125	2	474.269084	946.523616	2.9832	0.0014148	-0.07389	-3.5044E-05	2.9093	0.0013798	474.2689670013529	89.523	0.44965	89.523	89.313	89.763	0					18	10	2	0	0	0	0.028476	1	9548	9548		34.173	0	1	806140	+		4356	29734	3388	3397	5661	5661					0.04821491134373446
DKIRGGEVFLT	11	Unmodified	_DKIRGGEVFLT_					0	0	0			REV__tr|A0A553SH49|A0A553SH49_NIACISulfitereductase[NADPH]hemoproteinbeta-componentOS=NialliacirculansOX=1397GN=cysIPE=3SV=1	REV__tr|A0A553SH49|A0A553SH49_NIACISulfitereductase[NADPH]hemoproteinbeta-componentOS=NialliacirculansOX=1397GN=cysIPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	412.23236083984375	3	412.231189	1233.67174	0.34951	0.00014408	0.85557	0.00035269	1.2051	0.00049677	412.2313741887276	66.556	1.8179	63.066	62.66	64.478	-3.4902					114	36	4	0	0	0	0.72064	1	4853	4853		15.337	0	1	630620	+		4357	29775	3389	3398	5662	5662					0.06424757597551434
DKIRYTGDKT	10	Unmodified	_DKIRYTGDKT_					0	0	0		nc|ENSG00000250312|Q3SXZ3-2|ZNF718;ENSG00000250312|ENST00000510175|ZNF718	nc|ENSG00000250312|Q3SXZ3-2|ZNF718	nc|ENSG00000250312|Q3SXZ3-2|ZNF718	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.2836303710938	2	598.817127	1195.6197	3.8953	0.0023326	-2.529	-0.0015144	1.3663	0.00081818	599.3175470425349	88.267	0.55055	88.267	88.044	88.595	0					17	12	2	0	0	0	0.027028	1	9412	9412		18.262	0	1	349080			4358	9417	3390	3399	5663	5663					0.02971594183804882
DKITFHLR	8	Unmodified	_DKITFHLR_					0	0	0			REV__ENSG00000171298|ENST00000302262|GAA	REV__ENSG00000171298|ENST00000302262|GAA	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.8179931640625	2	515.295633	1028.57671	0.67809	0.00034942	1.061	0.00054675	1.7391	0.00089617	515.2964893554727	139.93	0.55951	139.93	139.56	140.12	0					15	11	2	0	0	0	0.028476	1	16301	16301		25.574	0	1	41237	+		4359	21607	3391	3400	5664	5664					0.06356868917009706
DKIVPRKV	8	Unmodified	_DKIVPRKV_					0	0	0			REV__tr|A0A553SKY6|A0A553SKY6_NIACIDihydrolipoamideacetyltransferasecomponentofpyruvatedehydrogenasecomplexOS=NialliacirculansOX=1397GN=CEQ21_19615PE=3SV=1	REV__tr|A0A553SKY6|A0A553SKY6_NIACIDihydrolipoamideacetyltransferasecomponentofpyruvatedehydrogenasecomplexOS=NialliacirculansOX=1397GN=CEQ21_19615PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.7518615722656	2	477.808377	953.6022	-0.99202	-0.000474	0.70007	0.0003345	-0.29196	-0.0001395	477.80860116264375	50.527	0.71957	47.373	47.172	47.892	-3.1536					22	13	2	0	0	0	0.028476	1	2965	2965		6.7355	0	1	16750	+		4360	30167	3392	3401	5665	5665					0.12354343439460536
DKIVSALVK	9	Unmodified	_DKIVSALVK_					0	0	0		tr|A0A7D6ZPN2|A0A7D6ZPN2_9CLOTN-acetylmuramoyl-L-alanineamidaseCwlDOS=ClostridiumintestinaleOX=36845GN=cwlDPE=4SV=1	tr|A0A7D6ZPN2|A0A7D6ZPN2_9CLOTN-acetylmuramoyl-L-alanineamidaseCwlDOS=ClostridiumintestinaleOX=36845GN=cwlDPE=4SV=1	tr|A0A7D6ZPN2|A0A7D6ZPN2_9CLOTN-acetylmuramoyl-L-alanineamidaseCwlDOS=ClostridiumintestinaleOX=36845GN=cwlDPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.7645568847656	2	486.808042	971.601532	-0.19659	-9.57E-05	0.40009	0.00019477	0.2035	9.9067E-05	486.8079545258781	43.139	0.4263	43.139	42.926	43.353	0					19	9	3	0	0	0	0.027462	1	2845	2845		25.574	7.2496	1	382610			4361	35692	3393	3402	5666	5666					0.11459503999742537
DKKAKYIL	8	Unmodified	_DKKAKYIL_					0	0	0		ENSG00000121068|ENST00000240328|TBX2;ENST00000477081.1_1_17:59477759-59482423:+|nuORF;ENST00000552054.1_1_12:115118611-115121104:-|nuORF;nc|ENSG00000135111|O15119-3|TBX3;ENSG00000135111|ENST00000349155|TBX3;nc|ENSG00000135111|O15119|TBX3	ENSG00000121068|ENST00000240328|TBX2	ENSG00000121068|ENST00000240328|TBX2	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.3097229003906	2	489.80276	977.590967	1.4559	0.00071311	1.1754	0.00057573	2.6314	0.0012888	489.80300473277026	115.26	0.65481	115.26	115.07	115.73	0					19	13	2	0	0	0	0.028476	1	13186	13186		68.787	22.835	1	142330			4362	3469	3394	3403	5667	5667					0.1012752134532775
DKKALSPSKL	10	Unmodified	_DKKALSPSKL_					0	0	0			REV__nc|ENSG00000133401|O15018-2|PDZD2	REV__nc|ENSG00000133401|O15018-2|PDZD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.8289184570312	2	543.829506	1085.64446	2.2727	0.001236	0.20151	0.00010959	2.4742	0.0013455	543.8294184197044	87.769	1.0038	87.769	87.338	88.342	0					47	23	3	0	0	0	0.026873	1	9332	9332		61.691	12.155	1	2334400	+		4363	19143	3395	3404	5668	5668					0.10506274057183873
DKKDNEAEI	9	Unmodified	_DKKDNEAEI_					0	0	0		ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.3015747070312	2	531.259111	1060.50367	-1.9674	-0.0010452	-4.0943	-0.0021751	-6.0617	-0.0032204	531.2567008418094	45.28	2.4897	42.242	41.765	44.254	-3.0385					92	47	4	0	0	0	0.027411	1	2527	2527		74.255	8.4519	1	394290			4364	4766	3396	3405	5669	5669					-0.02416349386908223
DKKEKIDFLGA	11	Unmodified	_DKKEKIDFLGA_					0	0	0		tr|A0A7D6ZV75|A0A7D6ZV75_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_14075PE=4SV=1	tr|A0A7D6ZV75|A0A7D6ZV75_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_14075PE=4SV=1	tr|A0A7D6ZV75|A0A7D6ZV75_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_14075PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	632.348388671875	2	632.350803	1262.68705	-1.4922	-0.00094358	1.3353	0.00084439	-0.15686	-9.9191E-05	632.3515070248368	99.419	0.69532	98.588	98.268	98.964	-0.83051					41	13	5	0	0	0	0.54114	1	9084	9084		50.034	2.074	1	442020			4365	35794	3397	3406	5670	5670					0.06621624394733772
DKKERSLLPA	10	Unmodified	_DKKERSLLPA_					0	0	0		nc|ENSG00000144278|Q8IUC8-2|GALNT13;ENSG00000144278|ENST00000392825|GALNT13;nc|ENSG00000144278|Q8IUC8-3|GALNT13	nc|ENSG00000144278|Q8IUC8-2|GALNT13	nc|ENSG00000144278|Q8IUC8-2|GALNT13	MULTI-SECPEP	OvCa9_classI_Rep4_	4	578.8576049804688	2	578.837862	1155.66117	-0.6384	-0.00036953	1.8	0.0010419	1.1616	0.00067238	578.8393252092155	75.028	0.14238	71.797	71.678	71.82	-3.2308					4	2	2	0	0	0	0.026871	1	5894	5894		21.96	0	1	38119			4366	5138	3398	3407	5671	5671					0.08956774943135315
DKKGTQKEV	9	Unmodified	_DKKGTQKEV_					0	0	0			REV__ENSG00000167522|ENST00000301030|ANKRD11	REV__ENSG00000167522|ENST00000301030|ANKRD11	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.8109741210938	2	516.787838	1031.56112	-0.64294	-0.00033226	0.99631	0.00051488	0.35337	0.00018262	516.7882266448729	56.448	0.64448	53.644	53.324	53.969	-2.804					21	12	2	0	0	0	0.027425	1	3975	3975		60.118	22.61	1	21186	+		4367	21284	3399	3408	5672	5672					0.04660537609311177
DKKIIDKIV	9	Unmodified	_DKKIIDKIV_					0	0	0		tr|A0A7D6VVV5|A0A7D6VVV5_9CLOTGlycosyltransferasefamily39proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01860PE=4SV=1	tr|A0A7D6VVV5|A0A7D6VVV5_9CLOTGlycosyltransferasefamily39proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01860PE=4SV=1	tr|A0A7D6VVV5|A0A7D6VVV5_9CLOTGlycosyltransferasefamily39proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01860PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3296508789062	2	536.342249	1070.66995	-0.41172	-0.00022082	1.3027	0.00069872	0.89103	0.0004779	536.3430416045646	48.378	0.64696	48.378	48.204	48.851	0					22	14	2	0	0	0	0.027462	1	3529	3529		15.642	0	1	94436			4368	35237	3400	3409	5673	5673					0.13743748579599924
DKKKFCTKL	9	Unmodified	_DKKKFCTKL_					0	0	0			REV__TIPARP|p.T275Lfs*27|1|0.03|ENSG00000163659|chr3:156678520-156678520|A/-|frameshift_variant	REV__TIPARP|p.T275Lfs*27|1|0.03|ENSG00000163659|chr3:156678520-156678520|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	555.8223266601562	2	555.820627	1109.6267	4.315	0.0023984	-1.1926	-0.00066286	3.1224	0.0017355	555.8198103416565	25.114	1.0176	22.405	22.261	23.279	-2.7097					54	22	4	0	0	0	0.53483	1	219	219		39.253	3.6345	1	302060	+		4369	20868	3401	3410	5674	5674					0.07627235530662801
DKKKKNHKT	9	Unmodified	_DKKKKNHKT_					0	0	0		HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|27|1|sense	HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|27|1|sense	HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|27|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.2982177734375	2	563.838197	1125.66184	-0.23868	-0.00013458	-0.74402	-0.00041951	-0.9827	-0.00055408	563.8378816429199	61.519	0.33274	61.519	61.332	61.665	0					17	7	3	0	0	0	0.027462	1	5414	5414		54.722	26.84	1	276800			4370	14468	3402	3411	5675	5675					0.10403614382835258
DKKKLRRR	8	Unmodified	_DKKKLRRR_					0	0	0			REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1	REV__nc|ENSG00000155974|Q9Y3R0-3|GRIP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3182373046875	2	550.362173	1098.70979	-0.46309	-0.00025487	2.4432	0.0013446	1.9801	0.0010898	550.3636133771461	53.07	0.56095	53.07	52.828	53.389	0					38	12	4	0	0	0	0.028476	1	4235	4235		30.504	1.3541	1	2061400	+		4371	20454	3403	3412	5676	5676					0.1643873309353694
DKKKWFAE	8	Unmodified	_DKKKWFAE_					0	0	0			REV__nc|ENSG00000189221|P21397-2|MAOA	REV__nc|ENSG00000189221|P21397-2|MAOA	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.770751953125	2	526.282192	1050.54983	-0.43125	-0.00022696	-4.428	-0.0023304	-4.8592	-0.0025573	526.2800733220392	56.456	0.85638	56.456	55.932	56.788	0					31	20	3	0	0	0	0.028476	1	4702	4702		19.997	2.5288	1	683360	+		4372	22768	3404	3413	5677	5677					0.026577603058285604
DKKLAEFL	8	Unmodified	_DKKLAEFL_					0	0	0			REV__tr|A0A7D6VUA2|A0A7D6VUA2_9CLOTHistidinol-phosphateaminotransferaseOS=ClostridiumintestinaleOX=36845GN=hisCPE=3SV=1	REV__tr|A0A7D6VUA2|A0A7D6VUA2_9CLOTHistidinol-phosphateaminotransferaseOS=ClostridiumintestinaleOX=36845GN=hisCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	482.2790222167969	2	482.279118	962.543683	0.40355	0.00019462	-0.49813	-0.00024024	-0.094586	-4.5617E-05	482.2786607728293	113.06	1.1363	112.94	112.67	113.81	-0.12174					53	22	4	0	0	0	0.64026	1	10723	10723		55.504	4.1688	1	90217	+		4373	31663	3405	3414	5678	5678					0.06091242074330694
DKKLKELFV	9	Unmodified	_DKKLKELFV_					0	0	0			REV__ENSG00000150867|ENST00000376573|PIP4K2A	REV__ENSG00000150867|ENST00000376573|PIP4K2A	MULTI-MSMS	OvCa9_classI_Rep3	3	560.3399047851562	2	560.342249	1118.66995	-7.144	-0.0040031	3.6168	0.0020266	-3.5273	-0.0019765	560.3441648343594	161.4	2.0053	160.03	159.58	161.59	-1.3692					105	41	5	0	0	0	0.56889	1	14020	14020		35.618	1.4457	1	475740	+		4374	20205	3406	3415	5679	5679					0.11535748579603933
DKKNISVV	8	Unmodified	_DKKNISVV_					0	0	0		tr|A0A7D7A4E8|A0A7D7A4E8_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02745PE=4SV=1	tr|A0A7D7A4E8|A0A7D7A4E8_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02745PE=4SV=1	tr|A0A7D7A4E8|A0A7D7A4E8_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02745PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	451.2546691894531	2	451.768917	901.523281	0.031039	1.4023E-05	-0.17046	-7.7007E-05	-0.13942	-6.2985E-05	451.7687863076378	56.201	1.021	56.201	55.641	56.662	0					36	24	2	0	0	0	0.028476	1	4616	4616		31.955	8.9124	1	210270			4375	36142	3407	3416	5680	5680					0.06858071414524147
DKKQQQFSKT	10	Unmodified	_DKKQQQFSKT_					0	0	0		tr|A0A553SM47|A0A553SM47_NIACIGlycosidehydrolasefamily2OS=NialliacirculansOX=1397GN=CEQ21_21785PE=3SV=1	tr|A0A553SM47|A0A553SM47_NIACIGlycosidehydrolasefamily2OS=NialliacirculansOX=1397GN=CEQ21_21785PE=3SV=1	tr|A0A553SM47|A0A553SM47_NIACIGlycosidehydrolasefamily2OS=NialliacirculansOX=1397GN=CEQ21_21785PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.91265869140625	3	413.222693	1236.64625	0.40166	0.00016597	-0.52394	-0.0002165	-0.12228	-5.0527E-05	413.22205651684425	55.043	0.30171	55.043	54.891	55.193	0					8	6	2	0	0	0	0.026881	1	4471	4471		24.232	0	1	69585			4376	33800	3408	3417	5681	5681					0.037392830751286965
DKKRKKGKRSR	11	Unmodified	_DKKRKKGKRSR_					0	0	0		nc|ENSG00000170807|Q6P5Q4-3|LMOD2	nc|ENSG00000170807|Q6P5Q4-3|LMOD2	nc|ENSG00000170807|Q6P5Q4-3|LMOD2	MULTI-SECPEP	OvCa9_classI_Rep2	2	462.93658447265625	3	462.963659	1385.86915	0.13987	6.4754E-05	3.459	0.0016014	3.5988	0.0016661	462.9659420876231	44.38	0.69678	41.67	41.452	42.149	-2.7097					29	13	3	0	0	0	0.025773	1	2529	2529		42.243	17.175	1	20266			4377	15177	3409	3418	5682	5682					0.19164821650861086
DKKRQKKR	8	Unmodified	_DKKRQKKR_					0	0	0		nc|ENSG00000134138|O14770-5|MEIS2;ENST00000561163.5_1_15:37328933-37390391:-|nuORF;nc|ENSG00000134138|O14770-7|MEIS2;nc|ENSG00000134138|O14770-8|MEIS2;nc|ENSG00000134138|O14770-3|MEIS2;nc|ENSG00000134138|O14770-2|MEIS2;nc|ENSG00000134138|O14770-4|MEIS2;ENSG00000134138|ENST00000561208|MEIS2;nc|ENSG00000134138|O14770-6|MEIS2	nc|ENSG00000134138|O14770-5|MEIS2	nc|ENSG00000134138|O14770-5|MEIS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.8430786132812	2	543.846356	1085.67816	-1.0048	-0.00054648	0.65786	0.00035778	-0.34699	-0.00018871	543.8466296828219	27.35	0.35037	27.35	27.191	27.542	0					9	6	2	0	0	0	0.028476	1	810	810		6.7355	0	1	85911			4378	4263	3410	3419	5683	5683					0.13874740339588243
DKKRRVAR	8	Unmodified	_DKKRRVAR_					0	0	0			REV__tr|A0A553SP34|A0A553SP34_NIACIPhosphateacyltransferaseOS=NialliacirculansOX=1397GN=plsXPE=3SV=1	REV__tr|A0A553SP34|A0A553SP34_NIACIPhosphateacyltransferaseOS=NialliacirculansOX=1397GN=plsXPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7943725585938	2	514.825424	1027.63629	-0.42298	-0.00021776	2.299	0.0011836	1.876	0.00096583	514.8263381270763	77.618	0.67799	74.801	74.536	75.214	-2.8165					16	13	2	0	0	0	0.028476	1	6242	6242		15.642	4.1308	1	22067	+		4379	30486	3411	3420	5684	5684					0.12358184651088777
DKKYERDSQ	9	Unmodified	_DKKYERDSQ_					0	0	0			REV__nc|ENSG00000183091|P20929-4|NEB	REV__nc|ENSG00000183091|P20929-4|NEB	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.8017578125	2	584.783284	1167.55202	-0.80669	-0.00047174	-2.0569	-0.0012028	-2.8636	-0.0016746	584.7833974969072	49.361	0.65227	49.361	48.94	49.593	0					26	14	3	0	0	0	0.027447	1	3695	3695		39.253	1.4413	1	373800	+		4380	22341	3412	3421	5685	5685					-0.025058557469947118
DKKYIRMYT	9	Unmodified	_DKKYIRMYT_					0	0	0			REV__ENST00000494303.1_1_4:165933772-165933994:-|nuORF	REV__ENST00000494303.1_1_4:165933772-165933994:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	609.3494262695312	2	609.320991	1216.62743	0.084335	5.1387E-05	-3.8837	-0.0023664	-3.7993	-0.002315	609.3187257719214	58.573	0.5318	58.573	58.28	58.812	0					31	12	3	0	0	0	0.027462	1	4968	4968		26.693	9.3279	1	613930	+		4381	26722	3413	3422	5686	5686					0.02778030179729285
DKLDGYIAR	9	Unmodified	_DKLDGYIAR_					0	0	0		tr|A0A7D7A6L1|A0A7D7A6L1_9CLOTCDP-diacylglycerol--glycerol-3-phosphate3-phosphatidyltransferaseOS=ClostridiumintestinaleOX=36845GN=pgsAPE=3SV=1	tr|A0A7D7A6L1|A0A7D7A6L1_9CLOTCDP-diacylglycerol--glycerol-3-phosphate3-phosphatidyltransferaseOS=ClostridiumintestinaleOX=36845GN=pgsAPE=3SV=1	tr|A0A7D7A6L1|A0A7D7A6L1_9CLOTCDP-diacylglycerol--glycerol-3-phosphate3-phosphatidyltransferaseOS=ClostridiumintestinaleOX=36845GN=pgsAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.770751953125	2	525.782556	1049.55056	1.5599	0.00082016	-2.8107	-0.0014778	-1.2508	-0.00065767	525.7804009805847	81.98	1.0223	81.98	81.372	82.394	0					37	24	3	0	0	0	0.027459	1	8507	8507		29.17	0	1	1247400			4382	36196	3414	3423	5687	5687					0.027765549549030766
DKLDQSPPR	9	Unmodified	_DKLDQSPPR_					0	0	0			REV__ENSG00000177239|ENST00000371589|MAN1B1	REV__ENSG00000177239|ENST00000371589|MAN1B1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.8310546875	2	528.277638	1054.54072	-0.52667	-0.00027823	0.92875	0.00049064	0.40208	0.00021241	528.2775961558883	55.954	0.53712	55.954	55.641	56.178	0					14	12	2	0	0	0	0.027425	1	4576	4576		51.193	0	1	261270	+		4383	21993	3415	3424	5688	5688					0.015633669495173308
DKLDQSPPRI	10	Unmodified	_DKLDQSPPRI_					0	0	0			REV__ENSG00000177239|ENST00000371589|MAN1B1	REV__ENSG00000177239|ENST00000371589|MAN1B1	MULTI-MSMS	OvCa99_classI_Rep5	1	584.8231201171875	2	584.81967	1167.62479	2.2803	0.0013335	4.2016	0.0024572	6.4819	0.0037907	584.8219272755546	116.17	1.0008	116.17	115.73	116.73	0					48	21	4	0	0	0	0.32926	1	13300	13300		77.318	6.5014	1	1535900	+		4384	21993	3416	3425	5689	5689					0.04767898046429764
DKLDQSPPRI	10	Unmodified	_DKLDQSPPRI_					0	0	0			REV__ENSG00000177239|ENST00000371589|MAN1B1	REV__ENSG00000177239|ENST00000371589|MAN1B1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	584.81967	1167.62479	2.2803	0.0013335	4.2016	0.0024572	6.4819	0.0037907	584.8219272755546	116.17	1.0008	116.17	115.73	116.73	0	0	0	NaN	77.318	48	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1535900	+		4385	21993	3416	3425							0.04767898046429764
DKLEAGHVVI	10	Unmodified	_DKLEAGHVVI_					0	0	0			REV__ENSG00000132681|ENST00000368081|ATP1A4	REV__ENSG00000132681|ENST00000368081|ATP1A4	MULTI-MSMS	OvCa99_classI_Rep5	1	540.807373046875	2	540.806031	1079.59751	2.6322	0.0014235	0.0024311	1.3147E-06	2.6347	0.0014248	540.8058792140695	96.157	0.96836	96.157	95.826	96.795	0					56	22	4	0	0	0	0.50999	1	10496	10496		52.937	0.63753	1	2059000	+		4386	19095	3417	3426	5690	5690					0.060894145060501614
DKLEIFVTD	9	Unmodified	_DKLEIFVTD_					0	0	0			REV__tr|A0A7D6ZZH9|A0A7D6ZZH9_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20495PE=4SV=1	REV__tr|A0A7D6ZZH9|A0A7D6ZZH9_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20495PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.2952880859375	2	540.284597	1078.55464	1.8641	0.0010071	0.21384	0.00011553	2.078	0.0011227	540.2851125389348	110.23	0.40454	110.23	110	110.4	0					14	8	2	0	0	0	0.027462	1	12510	12510		30.318	8.3578	1	163100	+		4387	32410	3418	3427	5691	5691					0.018505996579506245
DKLENNRSIQA	11	Unmodified	_DKLENNRSIQA_					0	0	0			REV__nc|ENSG00000175054|Q13535-2|ATR	REV__nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	OvCa9_classI_Rep4_	4	644.3349609375	2	644.336215	1286.65788	-0.52705	-0.00033959	-2.0539	-0.0013234	-2.5809	-0.001663	644.3348861265931	41.65	1.7543	38.669	38.388	40.142	-2.9804					72	33	4	0	0	0	0.71048	1	1883	1883		26.063	0.48933	1	176610	+		4388	21866	3419	3428	5692	5692					0.026014800984967223
DKLENNRSIQA	11	Unmodified	_DKLENNRSIQA_					0	0	0			REV__nc|ENSG00000175054|Q13535-2|ATR	REV__nc|ENSG00000175054|Q13535-2|ATR	MULTI-MATCH	OvCa9_classI_Rep2	2		2	644.336215	1286.65788	-0.045063	-2.9036E-05	-2.0201	-0.0013017	-2.0652	-0.0013307	644.3348029981514	41.621	1.4299	38.912	38.684	40.114	-2.7097	0.12117	2.7578E-05	NaN	26.063	43	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60164	+		4389	21866	3419	3428							0.026014800984967223
DKLENNRSIQA	11	Unmodified	_DKLENNRSIQA_					0	0	0			REV__nc|ENSG00000175054|Q13535-2|ATR	REV__nc|ENSG00000175054|Q13535-2|ATR	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	644.336215	1286.65788	-0.52705	-0.00033959	-2.0539	-0.0013234	-2.5809	-0.001663	644.3348861265931	41.65	1.7543	38.669	38.388	40.142	-2.9804	-0.12117	-1.5877E-05	NaN	26.063	72	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176610	+		4390	21866	3419	3428							0.026014800984967223
DKLENSSLVE	10	Unmodified	_DKLENSSLVE_					0	0	0		nc|ENSG00000095627|Q9BXT4-4|TDRD1;nc|ENSG00000095627|Q9BXT4-2|TDRD1;TDRD1|p.F1118Lfs*22|1|0.17|ENSG00000095627|chr10:114227249-114227250|-/A|frameshift_variant;ENSG00000095627|ENST00000695399|TDRD1;nc|ENSG00000095627|Q9BXT4-3|TDRD1	nc|ENSG00000095627|Q9BXT4-4|TDRD1	nc|ENSG00000095627|Q9BXT4-4|TDRD1	MULTI-SECPEP	OvCa9_classI_Rep3	3	566.2965698242188	2	567.287868	1132.56118	-1.1223	-0.00063665	-4.172	-0.0023667	-5.2943	-0.0030034	567.2863381690761	101.54	1.0506	99.931	99.395	100.45	-1.6053					35	19	3	0	0	0	0.026653	1	6920	6920		41.427	3.6151	1	26630			4391	1935	3420	3429	5693	5693					0.0002049281868039543
DKLGVLSLL	9	Unmodified	_DKLGVLSLL_					0	0	0			REV__tr|A0A7D6ZEF3|A0A7D6ZEF3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13475PE=4SV=1	REV__tr|A0A7D6ZEF3|A0A7D6ZEF3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13475PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2558898925781	2	479.302593	956.590633	2.6382	0.0012645	-0.49423	-0.00023689	2.144	0.0010276	479.302219458626	96.094	0.55279	96.094	95.785	96.338	0					16	12	2	0	0	0	0.027462	1	10520	10520		24.519	9.6543	1	146730	+		4392	31945	3421	3430	5694	5694					0.11060101625469088
DKLIWKQKAQ	10	Unmodified	_DKLIWKQKAQ_					0	0	0		ENSG00000100281|ENST00000216106|HMGXB4;ENST00000418170.5_1_22:35660034-35689641:+|nuORF	ENSG00000100281|ENST00000216106|HMGXB4	ENSG00000100281|ENST00000216106|HMGXB4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	419.1991882324219	3	419.915312	1256.72411	-2.0053	-0.00084207	0.094379	3.9631E-05	-1.911	-0.00080244	419.9155658046457	50.352	0.20776	47.211	47.132	47.34	-3.1416					5	3	2	0	0	0	0.027165	1	2887	2887		14.694	0	1	9461.2			4393	2037	3422	3431	5695	5695					0.10601340731182063
DKLKGVSLI	9	Unmodified	_DKLKGVSLI_					0	0	0		ENST00000574916.1_1_17:685618-686569:+|nuORF;ENSG00000171861|ENST00000304478|MRM3	ENST00000574916.1_1_17:685618-686569:+|nuORF	ENST00000574916.1_1_17:685618-686569:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.80902099609375	2	486.808042	971.601532	2.9731	0.0014473	1.0304	0.00050161	4.0035	0.0019489	486.80837264323793	130.6	1.3349	129.12	128.81	130.14	-1.478					69	27	4	0	0	0	0.53483	1	12564	12564		39.253	0.44669	1	239820			4394	7241	3423	3432	5696	5696					0.11459503999765275
DKLKWSLSL	9	Unmodified	_DKLKWSLSL_					0	0	0			REV__ENST00000382080.5_1_8:15095190-15095259:-|nuORF	REV__ENST00000382080.5_1_8:15095190-15095259:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3168334960938	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.60342	1	14106	14106		31.53	4.8369	1	202430	+		4395	25210	3424	3433	5697	5697					0.08222889028479585
DKLLAKTNQI	10	Unmodified	_DKLLAKTNQI_					0	0	0			REV__ENSG00000142149|ENST00000270112|HUNK	REV__ENSG00000142149|ENST00000270112|HUNK	MULTI-SECPEP	OvCa9_classI_Rep4_	4	572.8060913085938	2	572.340238	1142.66592	-1.0053	-0.00057535	0.45701	0.00026157	-0.54824	-0.00031378	572.3405048509766	81.292	0.87838	78.582	78.298	79.176	-2.7106					48	17	4	0	0	0	0.026544	1	6659	6659		66.962	0.53265	1	283360	+		4396	19768	3425	3434	5698	5698					0.10029659085898857
DKLLVKSDS	9	Unmodified	_DKLLVKSDS_					0	0	0			REV__tr|A0A7D6VQ89|A0A7D6VQ89_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_01830PE=4SV=1	REV__tr|A0A7D6VQ89|A0A7D6VQ89_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_01830PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.2594909667969	2	502.784764	1003.55498	-0.15555	-7.8208E-05	0.027035	1.3593E-05	-0.12851	-6.4615E-05	502.7845089554735	44.932	0.84848	44.932	44.44	45.289	0					42	18	4	0	0	0	0.027462	1	3017	3017		26.693	0	1	1490900	+		4397	31306	3426	3435	5699	5699					0.05334019377812638
DKLNISYSI	9	Unmodified	_DKLNISYSI_					0	0	0		tr|A0A553SRS4|A0A553SRS4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01635PE=4SV=1	tr|A0A553SRS4|A0A553SRS4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01635PE=4SV=1	tr|A0A553SRS4|A0A553SRS4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01635PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.8017578125	2	526.784764	1051.55498	0.1244	6.5531E-05	-0.91291	-0.00048091	-0.78851	-0.00041537	526.7840780278112	80.637	1.1463	78.942	78.222	79.368	-1.6951					38	22	2	0	0	0	0.027462	1	6775	6775		34.173	3.6689	1	49775			4398	34290	3427	3436	5700	5700					0.03126019377805278
DKLNISYSI	9	Unmodified	_DKLNISYSI_					0	0	0		tr|A0A553SRS4|A0A553SRS4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01635PE=4SV=1	tr|A0A553SRS4|A0A553SRS4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01635PE=4SV=1	tr|A0A553SRS4|A0A553SRS4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01635PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	526.784764	1051.55498	1.3714	0.00072243	0.4024	0.00021198	1.7738	0.00093441	526.7848707360188	78.859	0.36942	78.859	78.709	79.079	0	-0.041493	0.00072324	NaN	60.972	22	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	623860			4399	34290	3427	3436							0.03126019377805278
DKLNKLSE	8	Unmodified	_DKLNKLSE_					0	0	0			REV__tr|A0A7D6ZSZ0|A0A7D6ZSZ0_9CLOTDUF4865familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09415PE=4SV=1	REV__tr|A0A7D6ZSZ0|A0A7D6ZSZ0_9CLOTDUF4865familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09415PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.7650146484375	2	473.763832	945.513111	-0.091647	-4.3419E-05	-0.66872	-0.00031681	-0.76036	-0.00036023	473.76356368919807	48.486	1.8562	45.379	44.684	46.54	-3.1077					89	35	5	0	0	0	0.48084	1	2673	2673		79.451	0	1	576010	+		4400	32196	3428	3437	5701	5701					0.03817463689267697
DKLNKLSE	8	Unmodified	_DKLNKLSE_					0	0	0			REV__tr|A0A7D6ZSZ0|A0A7D6ZSZ0_9CLOTDUF4865familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09415PE=4SV=1	REV__tr|A0A7D6ZSZ0|A0A7D6ZSZ0_9CLOTDUF4865familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09415PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	473.763832	945.513111	-0.8619	-0.00040834	0.80609	0.00038189	-0.055811	-2.6441E-05	473.76408076019845	48.404	1.0451	45.654	45.34	46.385	-2.75	0.1376	0.00067002	NaN	79.451	36	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78745	+		4401	32196	3428	3437							0.03817463689267697
DKLQKIENL	9	Unmodified	_DKLQKIENL_					0	0	0			REV__CCSER2|p.A763Efs*315|1|0.03|ENSG00000107771|chr10:84477626-84477627|-/AA|frameshift_variant	REV__CCSER2|p.A763Efs*315|1|0.03|ENSG00000107771|chr10:84477626-84477627|-/AA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.79296875	2	550.819138	1099.62372	-0.95762	-0.00052748	0.79945	0.00044035	-0.15817	-8.7124E-05	550.8194420354739	92.495	0.95849	89.953	89.72	90.678	-2.5425					37	18	3	0	0	0	0.027453	1	8061	8061		45.972	0	1	170780	+		4402	15758	3429	3438	5702	5702					0.07789683677515313
DKLQKIENL	9	Unmodified	_DKLQKIENL_					0	0	0			REV__CCSER2|p.A763Efs*315|1|0.03|ENSG00000107771|chr10:84477626-84477627|-/AA|frameshift_variant	REV__CCSER2|p.A763Efs*315|1|0.03|ENSG00000107771|chr10:84477626-84477627|-/AA|frameshift_variant	MULTI-MATCH	OvCa99_classI_Rep5	1		2	550.819138	1099.62372	2.4508	0.0013499	-0.16129	-8.8844E-05	2.2895	0.0012611	550.8189109233751	90.395	0.51377	90.395	90.101	90.615	0	0.25007	0.00051064	NaN	23.523	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	771230	+		4403	15758	3429	3438							0.07789683677515313
DKLQKIENL	9	Unmodified	_DKLQKIENL_					0	0	0			REV__CCSER2|p.A763Efs*315|1|0.03|ENSG00000107771|chr10:84477626-84477627|-/AA|frameshift_variant	REV__CCSER2|p.A763Efs*315|1|0.03|ENSG00000107771|chr10:84477626-84477627|-/AA|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	550.819138	1099.62372	1.631	0.00089836	-2.2479	-0.0012382	-0.61695	-0.00033983	550.8179024278265	91.408	0.89822	90.173	89.848	90.746	-1.2355	0.028255	-0.001788	NaN	23.523	41	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77877	+		4404	15758	3429	3438							0.07789683677515313
DKLQKIENL	9	Unmodified	_DKLQKIENL_					0	0	0			REV__CCSER2|p.A763Efs*315|1|0.03|ENSG00000107771|chr10:84477626-84477627|-/AA|frameshift_variant	REV__CCSER2|p.A763Efs*315|1|0.03|ENSG00000107771|chr10:84477626-84477627|-/AA|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	550.819138	1099.62372	-1.6002	-0.00088142	-0.017354	-9.559E-06	-1.6176	-0.00089098	550.8188254436626	92.082	1.0562	90.058	89.534	90.59	-2.0241	-0.086489	0.00066921	NaN	23.523	35	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173990	+		4405	15758	3429	3438							0.07789683677515313
DKLQKKVLDI	10	Unmodified	_DKLQKKVLDI_					0	0	0			REV__nc|ENSG00000159086|Q9Y5B6-2|PAXBP1	REV__nc|ENSG00000159086|Q9Y5B6-2|PAXBP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	400.90289306640625	3	400.583451	1198.72852	1.8312	0.00073355	-3.7039	-0.0014837	-1.8727	-0.00075019	400.9170152285833	82.968	0.29303	81.369	81.167	81.46	-1.5989					7	5	2	0	0	0	0.026849	1	7069	7069		9.2118	0	1	7194.2	+		4406	20593	3430	3439	5703	5703					0.13710805154096306
DKLRAILEDSE	11	Unmodified	_DKLRAILEDSE_					0	0	0		ENSG00000170925|ENST00000302917|TEX13B;ENSG00000268629|ENST00000600991|TEX13A	ENSG00000170925|ENST00000302917|TEX13B	ENSG00000170925|ENST00000302917|TEX13B	MULTI-SECPEP	OvCa9_classI_Rep2	2	645.3711547851562	2	644.840799	1287.66705	0.82236	0.00053029	1.5359	0.00099041	2.3583	0.0015207	644.841681388442	89.518	1.6816	88.216	87.691	89.373	-1.302					89	33	4	0	0	0	0.025911	1	7867	7867		25.126	13.49	1	194640			4407	7154	3431	3440	5704	5704					0.03471828664123677
DKLRAILEDSE	11	Unmodified	_DKLRAILEDSE_					0	0	0		ENSG00000170925|ENST00000302917|TEX13B;ENSG00000268629|ENST00000600991|TEX13A	ENSG00000170925|ENST00000302917|TEX13B	ENSG00000170925|ENST00000302917|TEX13B	MULTI-MATCH	OvCa9_classI_Rep3	3		2	644.840799	1287.66705	-0.80189	-0.00051709	3.256	0.0020996	2.4541	0.0015825	644.8428506826057	90.448	1.5267	88.367	87.85	89.376	-2.0805	0.074035	0.0013461	NaN	25.126	83	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227210			4408	7154	3431	3440							0.03471828664123677
DKLRESVI	8	Unmodified	_DKLRESVI_					0	0	0			REV__nc|ENSG00000135476|Q14674-2|ESPL1	REV__nc|ENSG00000135476|Q14674-2|ESPL1	MULTI-SECPEP	OvCa9_classI_Rep2	2	480.7720947265625	2	480.279649	958.544745	-0.68151	-0.00032731	1.2964	0.00062265	0.61493	0.00029534	480.27983233511816	32.463	0.29695	29.753	29.679	29.976	-2.7097					6	5	2	0	0	0	0.028476	1	1086	1086		40.573	1.7665	1	5583.8	+		4409	19292	3432	3441	5705	5705					0.06381456443239131
DKLRISEN	8	Unmodified	_DKLRISEN_					0	0	0			REV__tr|A0A553SQ85|A0A553SQ85_NIACIM20/M25/M40familymetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_23030PE=4SV=1	REV__tr|A0A553SQ85|A0A553SQ85_NIACIM20/M25/M40familymetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_23030PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.7784423828125	2	487.766906	973.519259	0.023129	1.1281E-05	-2.1364	-0.001042	-2.1132	-0.0010308	487.7666550158693	57.375	0.68663	57.375	57.004	57.691	0					23	15	3	0	0	0	0.028476	1	4811	4811		42.396	3.1433	1	260440	+		4410	30613	3433	3442	5706	5706					0.03143981920800343
DKLRLLEP	8	Unmodified	_DKLRLLEP_					0	0	0			REV__ENSG00000158125|ENST00000379416|XDH	REV__ENSG00000158125|ENST00000379416|XDH	MULTI-MSMS	OvCa99_classI_Rep5	1	492.2991027832031	2	492.297842	982.581131	2.325	0.0011446	-0.23168	-0.00011405	2.0934	0.0010306	492.2976184769705	89.131	1.174	89.131	88.803	89.977	0					75	28	4	0	0	0	0.58851	1	9506	9506		66.429	0.53182	1	10370000	+		4411	20552	3434	3443	5707	5707					0.08914333339942004
DKLSKTNF	8	Unmodified	_DKLSKTNF_					0	0	0		FBXL5|p.Q365Ffs*34|1|0.81|ENSG00000118564|chr4:15626899-15626908|AGTCTGGGTA/-|frameshift_variant;ENSG00000118564|ENST00000341285|FBXL5	FBXL5|p.Q365Ffs*34|1|0.81|ENSG00000118564|chr4:15626899-15626908|AGTCTGGGTA/-|frameshift_variant	FBXL5|p.Q365Ffs*34|1|0.81|ENSG00000118564|chr4:15626899-15626908|AGTCTGGGTA/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.7450866699219	2	476.758549	951.502546	-0.16307	-7.7745E-05	-0.14509	-6.9172E-05	-0.30816	-0.00014692	476.75827734263106	91.655	1.0111	89.112	88.862	89.873	-2.5425					30	19	3	0	0	0	0.028476	1	7904	7904		33.516	3.0119	1	84276			4412	3316	3435	3444	5708	5708					0.024854810348415413
DKLSKTNF	8	Unmodified	_DKLSKTNF_					0	0	0		FBXL5|p.Q365Ffs*34|1|0.81|ENSG00000118564|chr4:15626899-15626908|AGTCTGGGTA/-|frameshift_variant;ENSG00000118564|ENST00000341285|FBXL5	FBXL5|p.Q365Ffs*34|1|0.81|ENSG00000118564|chr4:15626899-15626908|AGTCTGGGTA/-|frameshift_variant	FBXL5|p.Q365Ffs*34|1|0.81|ENSG00000118564|chr4:15626899-15626908|AGTCTGGGTA/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	476.758549	951.502546	1.4998	0.00071502	-1.5776	-0.00075213	-0.077831	-3.7107E-05	476.7575901124687	90.397	1.1076	89.095	88.78	89.888	-1.302	-0.0075958	-0.00076161	NaN	33.516	34	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45206			4413	3316	3435	3444							0.024854810348415413
DKLSKTNF	8	Unmodified	_DKLSKTNF_					0	0	0		FBXL5|p.Q365Ffs*34|1|0.81|ENSG00000118564|chr4:15626899-15626908|AGTCTGGGTA/-|frameshift_variant;ENSG00000118564|ENST00000341285|FBXL5	FBXL5|p.Q365Ffs*34|1|0.81|ENSG00000118564|chr4:15626899-15626908|AGTCTGGGTA/-|frameshift_variant	FBXL5|p.Q365Ffs*34|1|0.81|ENSG00000118564|chr4:15626899-15626908|AGTCTGGGTA/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	476.758549	951.502546	-0.0619	-2.9511E-05	-0.5685	-0.00027104	-0.6304	-0.00030055	476.7581570124246	91.125	1.0608	89.101	88.829	89.89	-2.0241	-0.0019498	0.00020058	NaN	33.516	31	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104270			4414	3316	3435	3444							0.024854810348415413
DKLTKLTEL	9	Unmodified	_DKLTKLTEL_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN	REV__ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.8172607421875	2	530.816064	1059.61758	-1.9545	-0.0010375	2.2722	0.0012061	0.31772	0.00016865	530.8170911149565	73.299	1.0629	69.902	69.495	70.557	-3.3961					64	21	4	0	0	0	0.38969	1	5680	5680		52.937	1.6012	1	686390	+		4415	20306	3436	3445	5709	5709					0.09015165445975981
DKLTSARGLLE	11	Unmodified	_DKLTSARGLLE_					0	0	0			REV__nc|ENSG00000168538|Q7Z392-3|TRAPPC11	REV__nc|ENSG00000168538|Q7Z392-3|TRAPPC11	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.8877258300781	3	401.562827	1201.66665	0.48946	0.00019655	0.86835	0.0003487	1.3578	0.00054524	401.5630020671864	43.619	0.639	43.619	43.227	43.866	0					30	14	3	0	0	0	0.024686	1	2910	2910		65.695	0	1	280060	+		4416	28993	3437	3446	5710	5710					0.07388453734961331
DKLVRLSRDLR	11	Unmodified	_DKLVRLSRDLR_					0	0	0		sp|Q6SWA3|UL298_HCMVMProteinUL29/28OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL29PE=3SV=2	sp|Q6SWA3|UL298_HCMVMProteinUL29/28OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL29PE=3SV=2	sp|Q6SWA3|UL298_HCMVMProteinUL29/28OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL29PE=3SV=2	MULTI-MSMS	OvCa9_classI_Rep3	3	457.60687255859375	3	457.612404	1369.81538	-5.5195	-0.0025258	-3.922	-0.0017948	-9.4415	-0.0043205	457.61056817491436	154.72	2.6827	153.71	152.23	154.91	-1.0076					88	62	2	0	0	0	0.72502	1	13273	13273		15.337	3.4051	1	42622			4417	32912	3438	3447	5711	5711					0.14526604428510836
DKLYINVCNI	10	Unmodified	_DKLYINVCNI_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4|ABCA13	REV__nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-SECPEP	OvCa99_classI_Rep5	1	597.2717895507812	2	597.812999	1193.61144	-0.20276	-0.00012121	0.0055263	3.3037E-06	-0.19723	-0.00011791	597.8128233928204	58.774	3.7567	58.774	58.112	61.869	0					146	89	3	0	0	0	0.027028	1	5455	5455		18.262	0	1	1227700	+		4418	22143	3439	3448	5712	5712					0.022383239428108936
DKMALKETS	9	Unmodified	_DKMALKETS_					0	0	0			REV__nc|ENSG00000172752|A8TX70|COL6A5	REV__nc|ENSG00000172752|A8TX70|COL6A5	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.2823486328125	2	511.762975	1021.5114	1.3975	0.00071517	-2.215	-0.0011335	-0.81753	-0.00041838	511.76176908477237	81.662	0.44354	81.662	81.493	81.937	0					14	10	2	0	0	0	0.027462	1	8443	8443		37.812	0	1	380140	+		4419	21722	3440	3449	5713	5713					0.001500866090168529
DKMHGFIS	8	Unmodified	_DKMHGFIS_					0	0	0			REV__tr|A0A553SIL3|A0A553SIL3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15095PE=4SV=1	REV__tr|A0A553SIL3|A0A553SIL3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15095PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	468.3066711425781	2	467.726195	933.437837	-0.029809	-1.3943E-05	1.4707	0.0006879	1.4409	0.00067396	467.7265803955116	62.073	0.46828	62.073	61.826	62.294	0					13	10	2	0	0	0	0.028476	1	5530	5530		10.866	0	1	101210	+		4420	29903	3441	3450	5714	5714					-0.03154417042787827
DKMKDVDVK	9	Unmodified	_DKMKDVDVK_					0	0	0		tr|A0A553SMM4|A0A553SMM4_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22840PE=4SV=1	tr|A0A553SMM4|A0A553SMM4_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22840PE=4SV=1	tr|A0A553SMM4|A0A553SMM4_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22840PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.330078125	2	539.284074	1076.5536	0.35086	0.00018921	-3.691	-0.0019905	-3.3402	-0.0018013	539.2820901489047	84.776	0.91698	82.125	81.788	82.705	-2.6509					41	18	3	0	0	0	0.02704	1	7089	7089		90.601	0	1	200850			4421	33849	3442	3451	5715	5715					0.01838062017395714
DKMKDVDVK	9	Unmodified	_DKMKDVDVK_					0	0	0		tr|A0A553SMM4|A0A553SMM4_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22840PE=4SV=1	tr|A0A553SMM4|A0A553SMM4_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22840PE=4SV=1	tr|A0A553SMM4|A0A553SMM4_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22840PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.3298950195312	2	539.284074	1076.5536	-0.18459	-9.9547E-05	-0.060627	-3.2695E-05	-0.24522	-0.00013224	539.283908779166	84.173	0.55721	81.51	81.265	81.822	-2.6629					21	11	2	0	0	0	0.027433	1	7052	7052		54.776	0	1	59975			4422	33849	3442	3451	5716	5716					0.01838062017395714
DKMQFGLHS	9	Unmodified	_DKMQFGLHS_					0	0	0			REV__nc|ENSG00000182463|Q9NRE2-2|TSHZ2	REV__nc|ENSG00000182463|Q9NRE2-2|TSHZ2	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.273193359375	2	531.755484	1061.49641	0.41273	0.00021947	4.2068	0.002237	4.6195	0.0024564	531.7576310850104	73.926	0.34313	73.926	73.792	74.135	0					13	8	2	0	0	0	0.027462	1	7260	7260		35.618	1.4457	1	430550	+		4423	22295	3443	3452	5717	5717					-0.03187360468314182
DKMVNQQL	8	Unmodified	_DKMVNQQL_					0	0	0			REV__nc|ENSG00000171984|Q8IYI0-2|SHLD1	REV__nc|ENSG00000171984|Q8IYI0-2|SHLD1	MULTI-MSMS	OvCa99_classI_Rep5	1	488.25140380859375	2	488.250034	974.485516	1.77	0.0008642	0.89805	0.00043847	2.668	0.0013027	488.2503222363108	91.376	0.78487	91.376	91.135	91.92	0					46	18	4	0	0	0	0.40148	1	9850	9850		87.754	5.4493	1	3777800	+		4424	21664	3444	3453	5718	5718					-0.0027476284260501416
DKMWELHG	8	Unmodified	_DKMWELHG_					0	0	0		ENST00000462856.6_1_6:112041237-112080218:-|nuORF	ENST00000462856.6_1_6:112041237-112080218:-|nuORF	ENST00000462856.6_1_6:112041237-112080218:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3153076171875	2	508.236927	1014.4593	-0.39195	-0.0001992	3.4655	0.0017613	3.0735	0.0015621	508.7399611361605	105.52	1.0053	103.51	103.15	104.16	-2.0161					43	19	4	0	0	0	0.028476	1	9598	9598		24.203	0	1	39041			4425	12214	3445	3454	5719	5719					-0.04735032014070839
DKNAELVKV	9	Unmodified	_DKNAELVKV_					0	0	0		ENST00000590854.5_3_18:43431870-43432008:-|nuORF	ENST00000590854.5_3_18:43431870-43432008:-|nuORF	ENST00000590854.5_3_18:43431870-43432008:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.84124755859375	2	508.292756	1014.57096	-0.13978	-7.1047E-05	-0.18548	-9.4277E-05	-0.32525	-0.00016532	508.29259845038274	60.485	0.16605	60.485	60.352	60.518	0					5	3	2	0	0	0	0.027462	1	5273	5273		12.207	0.69566	1	99745			4426	14112	3446	3455	5720	5720					0.06425725614701605
DKNDKKKI	8	Unmodified	_DKNDKKKI_					0	0	0			REV__ENSG00000095777|ENST00000642920|MYO3A	REV__ENSG00000095777|ENST00000642920|MYO3A	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.79449462890625	2	494.792924	987.571294	0.49322	0.00024404	3.2457	0.001606	3.7389	0.00185	494.79446862304474	97.978	1.1109	95.6	95.166	96.277	-2.3786					54	21	4	0	0	0	0.42649	2	8686	8686;8699		84.916	5.4645	1	495090	+		4427	17296	3447	3456	5721;5722	5721					0.07701145334567627
DKNEEKSLYK	10	Unmodified	_DKNEEKSLYK_					0	0	0		ENSG00000197275|ENST00000336148|RAD54B	ENSG00000197275|ENST00000336148|RAD54B	ENSG00000197275|ENST00000336148|RAD54B	MULTI-SECPEP	OvCa99_classI_Rep5	1	627.7515258789062	2	627.322242	1252.62993	2.1543	0.0013514	-0.2364	-0.0001483	1.9179	0.0012031	627.3219717016226	95.364	0.45818	95.364	95.119	95.577	0					18	10	2	0	0	0	0.026681	1	10398	10398		29.17	0	1	964620			4428	8695	3448	3457	5723	5723					0.013721571183850756
DKNERPNLN	9	Unmodified	_DKNERPNLN_					0	0	0			REV__ENSG00000221826|ENST00000327495|PSG3;REV__ENST00000595138.1_1_19:43519232-43530599:-|nuORF;REV__nc|ENSG00000243137|Q00888-3|PSG4	REV__ENSG00000221826|ENST00000327495|PSG3	MULTI-SECPEP	OvCa9_classI_Rep3	3	549.8299560546875	2	550.278169	1098.54179	-1.4471	-0.00079628	-2.1506	-0.0011834	-3.5976	-0.0019797	550.2768710922153	82.917	0.79738	80.621	80.283	81.081	-2.2963					22	15	2	0	0	0	0.027017	1	4667	4667		104.75	16.992	1	118650	+		4429	23339;23390;23463	3449	3458	5724	5724					-0.003544186815588546
DKNFDKLLEG	10	Unmodified	_DKNFDKLLEG_					0	0	0			REV__tr|A0A7D6ZSE6|A0A7D6ZSE6_9CLOTMethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metHPE=3SV=1	REV__tr|A0A7D6ZSE6|A0A7D6ZSE6_9CLOTMethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metHPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.8632202148438	2	589.806228	1177.5979	1.2291	0.00072493	2.0469	0.0012072	3.276	0.0019322	589.8070251072478	146.05	0.84128	146.05	145.73	146.57	0					34	16	4	0	0	0	0.027001	1	17061	17061		21.686	3.1547	1	161500	+		4430	32182	3450	3459	5725	5725					0.016207894352419316
DKNGIKGGL	9	Unmodified	_DKNGIKGGL_					0	0	0		ENSG00000107771|ENST00000372088|CCSER2;CCSER2|p.A763Efs*315|1|0.03|ENSG00000107771|chr10:84477626-84477627|-/AA|frameshift_variant;nc|ENSG00000107771|Q9H7U1|CCSER2;nc|ENSG00000107771|Q9H7U1-2|CCSER2	ENSG00000107771|ENST00000372088|CCSER2	ENSG00000107771|ENST00000372088|CCSER2	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.75146484375	2	451.258717	900.50288	2.4707	0.0011149	4.399	0.0019851	6.8697	0.0031	451.2605701665077	78.314	0.40459	78.314	78.093	78.498	0					14	9	2	0	0	0	0.02744	1	7904	7904		22.58	0	1	365120			4431	2615	3451	3460	5726	5726					0.048649007547169276
DKNGIKGGL	9	Unmodified	_DKNGIKGGL_					0	0	0		ENSG00000107771|ENST00000372088|CCSER2;CCSER2|p.A763Efs*315|1|0.03|ENSG00000107771|chr10:84477626-84477627|-/AA|frameshift_variant;nc|ENSG00000107771|Q9H7U1|CCSER2;nc|ENSG00000107771|Q9H7U1-2|CCSER2	ENSG00000107771|ENST00000372088|CCSER2	ENSG00000107771|ENST00000372088|CCSER2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	451.258717	900.50288	0.19858	8.9612E-05	-0.16759	-7.5627E-05	0.030991	1.3985E-05	451.2585958549973	80.327	0.56067	77.987	77.759	78.32	-2.3399	-0.16347	-0.0013773	NaN	60.118	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17527			4432	2615	3451	3460							0.048649007547169276
DKNGQHTLI	9	Unmodified	_DKNGQHTLI_					0	0	0			REV__tr|A0A553ST03|A0A553ST03_NIACIDUF871domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04115PE=4SV=1	REV__tr|A0A553ST03|A0A553ST03_NIACIDUF871domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04115PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	512.3187255859375	2	513.272355	1024.53016	-1.0067	-0.00051673	1.0686	0.00054847	0.061842	3.1742E-05	513.2726254814546	54.73	0.69936	51.916	51.573	52.272	-2.8139					20	13	3	0	0	0	0.027462	1	3755	3755		25.574	0	1	25248	+		4433	30900	3452	3461	5727	5727					0.01887384295105221
DKNLLIIQ	8	Unmodified	_DKNLLIIQ_					0	0	0		tr|A0A7D6VNW0|A0A7D6VNW0_9CLOTLTAsynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19795PE=3SV=1	tr|A0A7D6VNW0|A0A7D6VNW0_9CLOTLTAsynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19795PE=3SV=1	tr|A0A7D6VNW0|A0A7D6VNW0_9CLOTLTAsynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19795PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	478.7939147949219	2	478.792392	955.570232	1.8409	0.00088139	-0.14455	-6.9208E-05	1.6963	0.00081218	478.79244832247434	98.159	0.42233	98.159	97.954	98.376	0					20	9	3	0	0	0	0.48084	1	10800	10800		79.451	5.196	1	971390			4434	34733	3453	3462	5728	5728					0.09066930965661868
DKNLLIIQ	8	Unmodified	_DKNLLIIQ_					0	0	0		tr|A0A7D6VNW0|A0A7D6VNW0_9CLOTLTAsynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19795PE=3SV=1	tr|A0A7D6VNW0|A0A7D6VNW0_9CLOTLTAsynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19795PE=3SV=1	tr|A0A7D6VNW0|A0A7D6VNW0_9CLOTLTAsynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19795PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	478.792392	955.570232	-0.85836	-0.00041098	1.6138	0.00077268	0.75545	0.0003617	478.7923975479667	99.273	0.44766	98.38	98.057	98.504	-0.89305	0.11025	0.0014764	NaN	79.451	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15805			4435	34733	3453	3462							0.09066930965661868
DKNLQGRLF	9	Unmodified	_DKNLQGRLF_					0	0	0		ENSG00000154781|ENST00000383794|CCDC174;ENST00000465759.1_1_3:14693292-14708492:+|nuORF;CNOT2-C3orf19|1|fusion	ENSG00000154781|ENST00000383794|CCDC174;CNOT2-C3orf19|1|fusion	ENSG00000154781|ENST00000383794|CCDC174	MULTI-SECPEP	OvCa9_classI_Rep3	3	545.7915649414062	2	545.803823	1089.59309	-1.2296	-0.00067112	-0.47939	-0.00026165	-1.709	-0.00093277	545.8034499882812	91.501	0.85799	89.477	89.231	90.089	-2.0241					40	16	3	0	0	0	0.027461	1	5792	5792		32.812	0	1	235400			4436	5754;589	3454	3463	5729	5729					0.05187950083131909
DKNNAILELH	10	Unmodified	_DKNNAILELH_					0	0	0		tr|A0A553SIW8|A0A553SIW8_NIACIPeptidechainreleasefactor2OS=NialliacirculansOX=1397GN=prfBPE=3SV=1	tr|A0A553SIW8|A0A553SIW8_NIACIPeptidechainreleasefactor2OS=NialliacirculansOX=1397GN=prfBPE=3SV=1	tr|A0A553SIW8|A0A553SIW8_NIACIPeptidechainreleasefactor2OS=NialliacirculansOX=1397GN=prfBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.2837524414062	2	583.811845	1165.60914	-0.34407	-0.00020087	0.062312	3.6379E-05	-0.28176	-0.00016449	583.8118092104185	60.661	0.62881	60.661	60.314	60.943	0					37	14	4	0	0	0	0.026968	1	5300	5300		36.447	15.5	1	915280			4437	33435	3455	3464	5730	5730					0.03295611529370035
DKNRLVPTK	9	Unmodified	_DKNRLVPTK_					0	0	0			REV__ENSG00000197299|ENST00000355112|BLM	REV__ENSG00000197299|ENST00000355112|BLM	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.7596435546875	2	535.819473	1069.62439	-0.51226	-0.00027448	1.2141	0.00065054	0.70183	0.00037606	535.8199145652954	44.609	0.53453	44.609	44.26	44.795	0					14	11	2	0	0	0	0.027462	1	3041	3041		19.997	0.89325	1	345410	+		4438	22909	3456	3465	5731	5731					0.09236523117237994
DKNVPAPPVK	10	Unmodified	_DKNVPAPPVK_					0	0	0			REV__ENST00000589138.5_1_19:14029331-14037891:+|nuORF	REV__ENST00000589138.5_1_19:14029331-14037891:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	532.8089599609375	2	532.808574	1063.60259	-1.6207	-0.00086354	0.88738	0.0004728	-0.73335	-0.00039073	532.809075214856	76.341	2.1952	74.487	74.096	76.292	-1.854					137	40	4	0	0	0	0.28845	1	6371	6371		82.241	10.363	1	3797500	+		4439	19050	3457	3466	5732	5732					0.07333718368636255
DKNWTDTLSN	10	Unmodified	_DKNWTDTLSN_					0	0	0			REV__nc|ENSG00000137812|Q8NG31-3|KNL1	REV__nc|ENSG00000137812|Q8NG31-3|KNL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.3235473632812	2	597.275292	1192.53603	1.272	0.00075973	-2.9573	-0.0017663	-1.6853	-0.0010066	597.7745510701461	155.42	1.1618	155.42	154.93	156.09	0					58	22	4	0	0	0	0.026891	1	18265	18265		8.2351	0	1	75880	+		4440	19480	3458	3467	5733	5733					-0.05253561983886357
DKNYIRGEPD	10	Unmodified	_DKNYIRGEPD_					0	0	0			REV__tr|A0A7D6VQS2|A0A7D6VQS2_9CLOTGfo/Idh/MocAfamilyoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16205PE=3SV=1	REV__tr|A0A7D6VQS2|A0A7D6VQS2_9CLOTGfo/Idh/MocAfamilyoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16205PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	603.354248046875	2	603.791109	1205.56767	0.084435	5.0981E-05	3.8269	0.0023106	3.9113	0.0023616	603.7936669593921	56.588	0.49377	56.588	56.382	56.875	0					14	11	2	0	0	0	0.026819	1	4674	4674		23.523	4.4192	1	625130	+		4441	31354	3459	3468	5734	5734					-0.02689569229960398
DKPLINHLL	9	Unmodified	_DKPLINHLL_					0	0	0			REV__nc|ENSG00000173175|O95622-2|ADCY5;REV__ENSG00000174233|ENST00000357869|ADCY6	REV__ENSG00000174233|ENST00000357869|ADCY6	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8182983398438	2	531.818941	1061.62333	0.089047	4.7357E-05	-3.7428	-0.0019905	-3.6538	-0.0019431	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.59983	1	13660	13660		31.955	2.8053	1	263230	+		4442	21819;21754	3460	3469	5735	5735					0.09498308748334239
DKPLLEKSH	9	Unmodified	_DKPLLEKSH_					0	0	0		CON__P02769	CON__P02769	CON__P02769	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.8335571289062	2	533.798206	1065.58186	0.13878	7.4081E-05	0.76902	0.0004105	0.9078	0.00048458	533.7980787931923	62.289	0.46251	62.289	62.038	62.501	0					16	10	2	0	0	0	0.027446	1	5503	5503		35.152	0	1	1037300		+	4443	618	3461	3470	5736	5736					0.051691279890064834
DKPNRLLL	8	Unmodified	_DKPNRLLL_					0	0	0			REV__KIDINS220|p.H1622Qfs*20|1|0.07|ENSG00000134313|chr2:8731170-8731171|-/CACTTTGTTGGCAATTTTTAAAGCCC|frameshift_variant	REV__KIDINS220|p.H1622Qfs*20|1|0.07|ENSG00000134313|chr2:8731170-8731171|-/CACTTTGTTGGCAATTTTTAAAGCCC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.7998046875	2	484.798009	967.581465	0.089874	4.3571E-05	-0.69983	-0.00033928	-0.60995	-0.0002957	484.79781846303956	98.297	1.9447	95.919	95.47	97.414	-2.3786					88	37	5	0	0	0	0.7202	1	8746	8746		39.253	0	1	1577700	+		4444	19193	3462	3471	5737	5737					0.09637753059814713
DKPPDLLL	8	Unmodified	_DKPPDLLL_					0	0	0			REV__tr|A0A7D6VU27|A0A7D6VU27_9CLOT4-hydroxy-tetrahydrodipicolinatesynthaseOS=ClostridiumintestinaleOX=36845GN=dapAPE=3SV=1	REV__tr|A0A7D6VU27|A0A7D6VU27_9CLOT4-hydroxy-tetrahydrodipicolinatesynthaseOS=ClostridiumintestinaleOX=36845GN=dapAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	455.2431335449219	2	455.765843	909.517133	0.78127	0.00035608	0.88536	0.00040352	1.6666	0.00075959	455.7658956443235	58.379	1.3071	55.599	54.934	56.241	-2.7801					45	25	2	0	0	0	0.028476	1	4167	4167		76.774	10.345	1	38546	+		4445	31646	3463	3472	5738	5738					0.05875553183000193
DKPPGAISEH	10	Unmodified	_DKPPGAISEH_					0	0	0			REV__ENST00000586324.1_1_19:37756948-37758090:-|nuORF	REV__ENST00000586324.1_1_19:37756948-37758090:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.2755737304688	2	525.764363	1049.51417	-1.2108	-0.00063659	4.4024	0.0023146	3.1916	0.001678	525.7664619461573	50.339	1.3889	47.545	46.983	48.372	-2.794					57	27	3	0	0	0	0.026653	1	3175	3175		49.536	21.654	1	89877	+		4446	27862	3464	3473	5739	5739					-0.008603219417864238
DKPPRFRRLKQ	11	Unmodified	_DKPPRFRRLKQ_					0	0	0		PRRC2A|p.G1884Rfs*57|1|0.07|ENSG00000204469|chr6:31636227-31636228|-/C|frameshift_variant;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A	PRRC2A|p.G1884Rfs*57|1|0.07|ENSG00000204469|chr6:31636227-31636228|-/C|frameshift_variant	PRRC2A|p.G1884Rfs*57|1|0.07|ENSG00000204469|chr6:31636227-31636228|-/C|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.76446533203125	3	480.956393	1439.84735	-0.6242	-0.00030021	-2.7364	-0.0013161	-3.3606	-0.0016163	480.95511205620244	28.613	0.39919	28.613	28.439	28.838	0					20	7	4	0	0	0	0.026174	1	958	958		22.562	0	1	180980			4447	8988	3465	3474	5740	5740					0.14502016902315518
DKPRHKRI	8	Unmodified	_DKPRHKRI_					0	0	0			REV__DSEL|p.A1119Sfs*13|1|0.11|ENSG00000171451|chr18:67511285-67511286|-/A|frameshift_variant	REV__DSEL|p.A1119Sfs*13|1|0.11|ENSG00000171451|chr18:67511285-67511286|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.3212890625	2	525.319974	1048.6254	0.25774	0.0001354	1.9082	0.0010024	2.1659	0.0011378	525.3208010505311	110.43	1.6313	108.83	108.44	110.07	-1.6011					74	30	6	0	0	0	0.70469	1	10158	10158		42.396	3.1433	1	357930	+		4448	16339	3466	3475	5741	5741					0.10302782276789912
DKPTANITLN	10	Unmodified	_DKPTANITLN_					0	0	0		L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|57|1|sense	L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|57|1|sense	L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|57|1|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	543.79736328125	2	543.793121	1085.57169	0.92111	0.0005009	4.462	0.0024264	5.3832	0.0029273	543.7953451961573	156.88	1.1538	156.88	156.45	157.6	0					51	22	4	0	0	0	0.61634	1	18407	18407		40.058	0.80534	1	170350			4449	14683	3467	3476	5742	5742					0.032325202637593975
DKQEATMTL	9	Unmodified	_DKQEATMTL_					0	0	0			REV__ENSG00000166833|ENST00000349880|NAV2	REV__ENSG00000166833|ENST00000349880|NAV2	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.7529907226562	2	518.752607	1035.49066	-0.24427	-0.00012671	-4.4002	-0.0022826	-4.6444	-0.0024093	518.7497729602985	98.651	1.4843	97.758	97.12	98.604	-0.89305					44	29	2	0	0	0	0.027402	1	8980	8980		66.429	9.7082	1	25884	+		4450	21225	3468	3477	5743	5743					-0.025665037706403382
DKQGPFIW	8	Unmodified	_DKQGPFIW_					0	0	0			REV__ENSG00000104213|ENST00000251630|PDGFRL	REV__ENSG00000104213|ENST00000251630|PDGFRL	MULTI-SECPEP	OvCa9_classI_Rep2	2	494.8049621582031	2	495.75581	989.497067	-1.7643	-0.00087468	-1.8158	-0.00090018	-3.5801	-0.0017749	495.7538329576381	63.065	0.31742	60.321	60.056	60.374	-2.7444					8	5	2	0	0	0	0.028476	1	4744	4744		40.573	0	1	6081.5	+		4451	17650	3469	3478	5744	5744					0.0018980224302822535
DKQGRGGGRV	10	Unmodified	_DKQGRGGGRV_					0	0	0			REV__ENSG00000204065|ENST00000372680|TCEAL5	REV__ENSG00000204065|ENST00000372680|TCEAL5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7994384765625	2	515.281046	1028.54754	-2.4014	-0.0012374	3.3958	0.0017498	0.99438	0.00051238	515.282902818821	49.494	1.1412	46.353	46.095	47.236	-3.1416					49	21	3	0	0	0	0.026826	1	2889	2889		44.377	7.2181	1	147110	+		4452	23123	3470	3479	5745	5745					0.034407246207592834
DKQIGYQGGF	10	Unmodified	_DKQIGYQGGF_					0	0	0			REV__ENSG00000180353|ENST00000314583|HCLS1	REV__ENSG00000180353|ENST00000314583|HCLS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.3052978515625	2	556.772188	1111.52982	0.3226	0.00017961	-0.71574	-0.00039851	-0.39314	-0.00021889	557.2709901912577	62.189	0.29661	62.189	62.081	62.378	0					9	6	2	0	0	0	0.026956	1	5544	5544		14.137	3.8719	1	100260	+		4453	22169	3471	3480	5746	5746					-0.02148035424761474
DKQIKPDCAQS	11	Unmodified	_DKQIKPDCAQS_					0	0	0			REV__nc|ENSG00000127952|Q9Y6J8-2|STYXL1	REV__nc|ENSG00000127952|Q9Y6J8-2|STYXL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	617.7903442382812	2	616.80062	1231.58669	1.7312	0.0010678	-2.2477	-0.0013864	-0.51654	-0.0003186	616.7990621375652	112.61	0.85814	112.61	112.3	113.15	0					26	18	2	0	0	0	0.025814	1	12823	12823		33.922	3.3528	1	128330	+		4454	18833	3472	3481	5747	5747					-0.019843559305627423
DKQKLEFLKKS	11	Unmodified	_DKQKLEFLKKS_					0	0	0		ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	MULTI-MSMS	OvCa99_classI_Rep5	1	455.2690734863281	3	455.269643	1362.7871	-0.7842	-0.00035702	-1.677	-0.00076351	-2.4612	-0.0011205	455.26866226169113	27.422	0.64986	27.422	27.291	27.941	0					34	12	4	0	0	0	0.70032	1	812	812		29.551	1.9068	1	198630			4455	3697	3473	3482	5748	5748					0.12021861728544536
DKQQNLFRR	9	Unmodified	_DKQQNLFRR_					0	0	0		tr|A0A553SQ76|A0A553SQ76_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_20455PE=4SV=1	tr|A0A553SQ76|A0A553SQ76_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_20455PE=4SV=1	tr|A0A553SQ76|A0A553SQ76_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_20455PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	402.5868225097656	3	402.223028	1203.64725	2.1512	0.00086527	-2.1637	-0.00087027	-0.012441	-5.0042E-06	402.222191676409	66.324	0.69646	63.628	63.418	64.114	-2.6958					23	13	2	0	0	0	0.027462	1	5190	5190		22.58	2.5829	1	22173			4456	34129	3474	3483	5749	5749					0.05357542234696666
DKQQNLFRR	9	Unmodified	_DKQQNLFRR_					0	0	0		tr|A0A553SQ76|A0A553SQ76_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_20455PE=4SV=1	tr|A0A553SQ76|A0A553SQ76_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_20455PE=4SV=1	tr|A0A553SQ76|A0A553SQ76_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_20455PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	402.5868225097656	3	402.223028	1203.64725	1.5439	0.000621	0.7372	0.00029652	2.2811	0.00091752	402.22360122694846	66.896	0.24821	64.235	64.099	64.347	-2.661					5	4	2	0	0	0	0.027462	1	5190	5190		22.58	3.4761	1	6963.1			4457	34129	3474	3483	5750	5750					0.05357542234696666
DKQRPDSI	8	Unmodified	_DKQRPDSI_					0	0	0			REV__ENST00000554125.5_1_14:76642983-76644484:+|nuORF	REV__ENST00000554125.5_1_14:76642983-76644484:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.27386474609375	2	479.751256	957.487959	-0.72428	-0.00034747	-0.93759	-0.00044981	-1.6619	-0.00079728	479.7505100784084	50.094	0.21334	50.094	49.988	50.201	0					6	4	2	0	0	0	0.028476	1	3797	3797		53.351	7.3995	1	154850	+		4458	27523	3475	3484	5751	5751					0.007514088867083046
DKQTVNTY	8	Unmodified	_DKQTVNTY_					0	0	0		nc|ENSG00000102904|Q2TAA8|TSNAXIP1;ENSG00000102904|ENST00000561639|TSNAXIP1;ENST00000569504.5_1_16:67861593-67861893:+|nuORF;nc|ENSG00000102904|Q2TAA8-2|TSNAXIP1;ENST00000466164.5_1_16:67859786-67861893:+|nuORF;ENST00000568990.5_1_16:67859786-67861893:+|nuORF	nc|ENSG00000102904|Q2TAA8|TSNAXIP1	nc|ENSG00000102904|Q2TAA8|TSNAXIP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.3221435546875	2	484.737814	967.461075	2.1328	0.0010338	3.3867	0.0016417	5.5195	0.0026755	484.73933421247693	108.33	1.2965	108.33	107.99	109.28	0					43	29	2	0	0	0	0.028476	1	12335	12335		27.882	1.1893	1	235150			4459	2266	3476	3485	5752	5752					-0.023956997244908962
DKRELIAL	8	Unmodified	_DKRELIAL_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	OvCa9_classI_Rep3	3	479.2903747558594	2	479.290017	956.565481	-0.33467	-0.0001604	0.85312	0.00040889	0.51845	0.00024849	479.29029988395797	117.55	0.94048	116.51	116.24	117.18	-1.0324					43	18	3	0	0	0	0.55617	1	8832	8832		71.877	2.2498	1	249320			4460	2891	3477	3486	5753	5753					0.0854604682289164
DKRELIAL	8	Unmodified	_DKRELIAL_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.28924560546875	2	479.290017	956.565481	-0.66481	-0.00031864	0.92067	0.00044127	0.25586	0.00012263	479.29031792396887	117.84	0.94633	116.49	116.26	117.21	-1.3444					40	17	3	0	0	0	0.55617	2	11033	11033;11045		71.877	8.5712	1	302860			4461	2891	3477	3486	5754;5755	5754					0.0854604682289164
DKREVIEN	8	Unmodified	_DKREVIEN_					0	0	0			REV__ENSG00000180071|ENST00000399703|ANKRD18A	REV__ENSG00000180071|ENST00000399703|ANKRD18A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.3016052246094	2	501.764363	1001.51417	-0.81567	-0.00040928	-0.90486	-0.00045403	-1.7205	-0.0008633	501.76349084521775	104.79	0.83409	102.67	102.11	102.95	-2.1192					28	15	3	0	0	0	0.028476	1	9460	9460		87.696	8.2454	1	30334	+		4462	22156	3478	3487	5756	5756					0.013476780581868297
DKRGSNGQSLP	11	Unmodified	_DKRGSNGQSLP_					0	0	0			REV__nc|ENSG00000198732|Q9H4F8|SMOC1	REV__nc|ENSG00000198732|Q9H4F8|SMOC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.7926025390625	2	579.796726	1157.5789	-1.7841	-0.0010344	-4.4868	-0.0026014	-6.2709	-0.0036358	579.7939864226607	146.06	1.0909	144.62	144.29	145.38	-1.4357					53	20	4	0	0	0	0.71789	1	14339	14339		23.523	0.94304	1	241170	+		4463	23054	3479	3488	5757	5757					0.006412528641931203
DKRIHQLEV	9	Unmodified	_DKRIHQLEV_					0	0	0			REV__nc|ENSG00000173230|Q14789|GOLGB1	REV__nc|ENSG00000173230|Q14789|GOLGB1	MULTI-SECPEP	OvCa9_classI_Rep3	3	569.8348388671875	2	569.32238	1136.63021	-0.42509	-0.00024202	2.6099	0.0014859	2.1848	0.0012439	569.3241447066782	98.942	0.66982	97.257	96.904	97.574	-1.685					24	12	3	0	0	0	0.027462	1	6670	6670		25.574	0	1	30273	+		4464	21758	3480	3489	5758	5758					0.06735621628899935
DKRITLDI	8	Unmodified	_DKRITLDI_					0	0	0			REV__ENST00000358517.6_1_6:151162784-151162910:+|nuORF	REV__ENST00000358517.6_1_6:151162784-151162910:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.7645568847656	2	487.287474	972.560395	-0.92841	-0.0004524	0.59202	0.00028849	-0.33639	-0.00016392	487.287738380462	43.493	1.0777	43.493	43.227	44.305	0					32	24	2	0	0	0	0.028476	1	2845	2845		32.812	1.2826	1	274430	+		4465	24800	3481	3490	5759	5759					0.0730174296027144
DKRKVSEL	8	Unmodified	_DKRKVSEL_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	OvCa9_classI_Rep2	2	487.7875061035156	2	487.785099	973.555644	-0.85887	-0.00041894	3.8744	0.0018899	3.0156	0.001471	487.78731067257536	102	1.8287	101.24	100.67	102.5	-0.76401					100	36	5	0	0	0	0.66992	1	9390	9390		49.442	2.6751	1	589210			4466	5173	3482	3491	5760	5760					0.06780858817523949
DKRLLTGA	8	Unmodified	_DKRLLTGA_					0	0	0		ENST00000449544.5_1_6:30262738-30294091:-|nuORF;ENST00000602550.5_1_6:30257244-30294091:-|nuORF	ENST00000449544.5_1_6:30262738-30294091:-|nuORF	ENST00000449544.5_1_6:30262738-30294091:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	436.28961181640625	2	437.261259	872.507966	0.34555	0.0001511	-1.5437	-0.00067501	-1.1982	-0.00052392	437.26016840291595	38.142	0.49955	38.142	37.94	38.44	0					21	10	3	0	0	0	0.028476	1	2125	2125		32.812	0	1	121970			4467	12029	3483	3492	5761	5761					0.06661204617319072
DKRLNNIR	8	Unmodified	_DKRLNNIR_					0	0	0			REV__tr|A0A7D6VTS6|A0A7D6VTS6_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_18070PE=3SV=1	REV__tr|A0A7D6VTS6|A0A7D6VTS6_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_18070PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7750854492188	2	514.801614	1027.58868	-0.29485	-0.00015179	3.1693	0.0016316	2.8745	0.0014798	514.802951910964	65.238	0.35107	65.238	65.034	65.385	0					14	8	2	0	0	0	0.028476	1	5964	5964		23.042	2.0956	1	346510	+		4468	31627	3484	3493	5762	5762					0.07598485660219012
DKRNMKLI	8	Unmodified	_DKRNMKLI_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.3288879394531	2	509.297319	1016.58008	-0.4271	-0.00021752	-2.0931	-0.001066	-2.5202	-0.0012835	509.2962047199459	50.748	0.44148	50.748	50.594	51.036	0					12	9	2	0	0	0	0.028476	1	3894	3894		30.504	7.924	1	69166			4469	1103	3485	3494	5763	5763					0.07245795699407154
DKRRFPKL	8	Unmodified	_DKRRFPKL_					0	0	0		nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-MSMS	OvCa9_classI_Rep3	3	530.32568359375	2	530.324725	1058.6349	0.82289	0.0004364	1.4699	0.00077952	2.2928	0.0012159	530.3254027341202	128.54	1.8781	127.44	127.12	129	-1.0933					101	37	4	0	0	0	0.38598	1	10105	10105		90.777	5.8611	1	497670			4470	7235	3486	3495	5764	5764					0.10792550562314318
DKRRLSAR	8	Unmodified	_DKRRLSAR_					0	0	0			REV__ENSG00000137460|ENST00000511601|FHDC1	REV__ENSG00000137460|ENST00000511601|FHDC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.3053894042969	2	501.301781	1000.58901	0.5165	0.00025892	-2.1103	-0.0010579	-1.5938	-0.00079896	501.3005344880028	96.764	0.59273	94.339	94.118	94.711	-2.4256					21	11	3	0	0	0	0.028476	1	8559	8559		37.159	5.2042	1	40836	+		4471	19452	3487	3496	5765	5765					0.08873905380085034
DKRTIAAR	8	Unmodified	_DKRTIAAR_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.7767333984375	2	465.777608	929.540663	2.0038	0.00093333	-1.333	-0.0006209	0.67077	0.00031243	465.77638441145956	130.09	6.1548	128.62	125.6	131.75	-1.4779					205	123	4	0	0	0	0.75241	1	12432	12432		25.45	0	1	56999			4472	1811	3488	3497	5766	5766					0.07307411740180214
DKRVLTVEV	9	Unmodified	_DKRVLTVEV_					0	0	0			REV__ENSG00000065526|ENST00000375759|SPEN	REV__ENSG00000065526|ENST00000375759|SPEN	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2794189453125	2	529.813856	1057.61316	1.5864	0.00084052	-0.13689	-7.2525E-05	1.4496	0.00076799	529.8141051737433	92.192	0.37724	92.192	92.008	92.385	0					16	8	2	0	0	0	0.027447	1	9940	9940		47.657	9.8458	1	403330	+		4473	16796	3489	3498	5767	5767					0.0866570102307378
DKRVNLAR	8	Unmodified	_DKRVNLAR_					0	0	0		L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|113|2|sense	L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|113|2|sense	L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|113|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.3088684082031	2	486.290882	970.567212	-0.18445	-8.9695E-05	3.0742	0.0014949	2.8897	0.0014053	486.29269345047913	30.416	0.29858	30.416	30.334	30.632	0					12	5	3	0	0	0	0.028476	1	1180	1180		35.618	15.622	1	56596			4474	14558	3490	3499	5768	5768					0.08075100631504029
DKSAIPFSFI	10	Unmodified	_DKSAIPFSFI_					0	0	0			REV__ENST00000507765.1_1_4:6290695-6304192:+|nuORF	REV__ENST00000507765.1_1_4:6290695-6304192:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.7989501953125	2	562.802957	1123.59136	-0.16976	-9.5543E-05	3.4378	0.0019348	3.2681	0.0018393	562.804310117961	39.662	0.33664	39.662	39.547	39.883	0					11	7	2	0	0	0	0.02717	1	2336	2336		23.523	2.5758	1	1014800	+		4475	17933	3491	3500	5769	5769					0.03450896274512161
DKSDNGSVAE	10	Unmodified	_DKSDNGSVAE_					0	0	0			REV__tr|A0A553SJ73|A0A553SJ73_NIACICadherin-likebetasandwichdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16270PE=4SV=1	REV__tr|A0A553SJ73|A0A553SJ73_NIACICadherin-likebetasandwichdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16270PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	511.2265930175781	2	511.225268	1020.43598	-0.5954	-0.00030438	2.5003	0.0012782	1.9049	0.00097384	511.22654559235866	37.738	1.5325	37.738	37.485	39.017	0					80	33	5	0	0	0	0.48398	1	2078	2078		56.434	10.482	1	7687600	+		4476	29973	3492	3501	5770	5770					-0.07341799317703135
DKSDNGSVAE	10	Unmodified	_DKSDNGSVAE_					0	0	0			REV__tr|A0A553SJ73|A0A553SJ73_NIACICadherin-likebetasandwichdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16270PE=4SV=1	REV__tr|A0A553SJ73|A0A553SJ73_NIACICadherin-likebetasandwichdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16270PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	511.2259216308594	2	511.225268	1020.43598	0.71545	0.00036576	1.9158	0.00097938	2.6312	0.0013451	511.22611807898153	42.761	1.1373	40.052	39.769	40.906	-2.7097					49	22	3	0	0	0	0.65849	1	2327	2327		35.152	0.97948	1	130720	+		4477	29973	3492	3501	5771	5771					-0.07341799317703135
DKSEDLPSH	9	Unmodified	_DKSEDLPSH_					0	0	0		ENSG00000164715|ENST00000297293|LMTK2	ENSG00000164715|ENST00000297293|LMTK2	ENSG00000164715|ENST00000297293|LMTK2	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.8367919921875	2	514.238178	1026.4618	0.50736	0.0002609	-3.0879	-0.0015879	-2.5805	-0.001327	514.2366499513363	111.65	0.54124	111.51	111.37	111.91	-0.13961					24	10	3	0	0	0	0.027462	1	10583	10583		34.173	0	1	12959			4478	6479	3493	3502	5772	5772					-0.050369050754397904
DKSFLRISV	9	Unmodified	_DKSFLRISV_					0	0	0		HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|121|1|anti-sense	HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|121|1|anti-sense	HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|121|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.808837890625	2	532.808574	1063.60259	-1.1516	-0.00061358	0.62725	0.0003342	-0.52435	-0.00027938	532.8089107055455	77.667	2.0564	74.851	74.488	76.544	-2.8165					142	42	4	0	0	0	0.3076	1	6297	6297		62.107	1.1355	1	4693600			4479	14461	3494	3503	5773	5773					0.07333718368636255
DKSGVYIRD	9	Unmodified	_DKSGVYIRD_					0	0	0			REV__ENSG00000075223|ENST00000265361|SEMA3C	REV__ENSG00000075223|ENST00000265361|SEMA3C	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.8135986328125	2	526.772188	1051.52982	0.24802	0.00013065	-0.085061	-4.4808E-05	0.16296	8.5845E-05	526.7699449855837	74.092	0.19403	74.092	74.02	74.214	0					7	4	2	0	0	0	0.027462	1	7296	7296		19.997	13.684	1	163930	+		4480	16964	3495	3504	5774	5774					0.006119645752505676
DKSIEIINA	9	Unmodified	_DKSIEIINA_					0	0	0		tr|A0A7D6ZPC8|A0A7D6ZPC8_9CLOTCotSfamilysporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19670PE=4SV=1	tr|A0A7D6ZPC8|A0A7D6ZPC8_9CLOTCotSfamilysporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19670PE=4SV=1	tr|A0A7D6ZPC8|A0A7D6ZPC8_9CLOTCotSfamilysporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19670PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.27520751953125	2	501.776939	1001.53933	2.4963	0.0012526	-2.8831	-0.0014467	-0.38678	-0.00019408	501.7755444988216	75.147	0.44839	75.147	74.92	75.369	0					17	10	2	0	0	0	0.027438	1	7465	7465		47.96	0	1	1005400			4481	35690	3496	3505	5775	5775					0.038617328607642776
DKSKEEILN	9	Unmodified	_DKSKEEILN_					0	0	0		tr|A0A7D6VYX2|A0A7D6VYX2_9CLOTYgiT-typezincfingerproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18065PE=4SV=1	tr|A0A7D6VYX2|A0A7D6VYX2_9CLOTYgiT-typezincfingerproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18065PE=4SV=1	tr|A0A7D6VYX2|A0A7D6VYX2_9CLOTYgiT-typezincfingerproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18065PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	538.28564453125	2	538.285128	1074.5557	1.9929	0.0010727	0.30961	0.00016666	2.3025	0.0012394	538.28508696052	85.277	0.61721	85.277	85.046	85.663	0					31	14	3	0	0	0	0.2077	1	8945	8945		75.043	0.78827	1	2494700			4482	35341	3497	3506	5776	5776					0.0214081402687043
DKSKEKDKVK	10	Unmodified	_DKSKEKDKVK_					0	0	0		ENSG00000165632|ENST00000344293|TAF3	ENSG00000165632|ENST00000344293|TAF3	ENSG00000165632|ENST00000344293|TAF3	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.928955078125	3	402.23471	1203.6823	0.74193	0.00029843	0.033269	1.3382E-05	0.7752	0.00031181	402.2346101201109	51.867	0.45804	51.867	51.669	52.127	0					13	10	2	0	0	0	0.026867	1	4024	4024		7.6794	0	1	107350			4483	6582	3498	3507	5777	5777					0.08860740251975585
DKSKFKTKI	9	Unmodified	_DKSKFKTKI_					0	0	0		ENSG00000129173|ENST00000250024|E2F8	ENSG00000129173|ENST00000250024|E2F8	ENSG00000129173|ENST00000250024|E2F8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.7962036132812	2	547.832049	1093.64954	-2.5721	-0.0014091	1.9751	0.001082	-0.59695	-0.00032703	547.8328394002452	108.09	0.44373	106.22	106.02	106.46	-1.8785					11	8	2	0	0	0	0.027411	1	9868	9868		64.207	0	1	14256			4484	3924	3499	3508	5778	5778					0.10646577919806077
DKSLKQVAL	9	Unmodified	_DKSLKQVAL_					0	0	0		tr|A0A7D6VRM2|A0A7D6VRM2_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_20190PE=4SV=1	tr|A0A7D6VRM2|A0A7D6VRM2_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_20190PE=4SV=1	tr|A0A7D6VRM2|A0A7D6VRM2_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_20190PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	501.28033447265625	2	501.303124	1000.5917	-0.87621	-0.00043925	0.71746	0.00035967	-0.15875	-7.958E-05	501.3033354330936	89.909	0.76938	87.829	87.49	88.259	-2.0805					28	14	3	0	0	0	0.027462	1	5593	5593		35.618	0	1	38227			4485	34943	3500	3509	5779	5779					0.09142315994370165
DKSNFINLL	9	Unmodified	_DKSNFINLL_					0	0	0		tr|A0A7D6VMG7|A0A7D6VMG7_9CLOTYcxBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15345PE=4SV=1	tr|A0A7D6VMG7|A0A7D6VMG7_9CLOTYcxBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15345PE=4SV=1	tr|A0A7D6VMG7|A0A7D6VMG7_9CLOTYcxBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15345PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.8084106445312	2	532.292756	1062.57096	-0.47099	-0.0002507	0.26235	0.00013965	-0.20863	-0.00011105	532.292686559043	76.693	0.62942	74.321	74.085	74.715	-2.3715					17	11	2	0	0	0	0.027353	1	3989	3989		82.241	30.905	1	128380			4486	34656	3501	3510	5780	5780					0.04217725614716983
DKSPETVLQSK	11	Unmodified	_DKSPETVLQSK_					0	0	0		ENSG00000155313|ENST00000400183|USP25	ENSG00000155313|ENST00000400183|USP25	ENSG00000155313|ENST00000400183|USP25	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.2406311035156	3	411.22247	1230.64558	0.064225	2.6411E-05	0.27404	0.00011269	0.33826	0.0001391	411.22259888135045	27.881	0.25013	27.881	27.741	27.991	0					7	4	2	0	0	0	0.025656	1	874	874		9.7451	0	1	21626			4487	5779	3502	3511	5781	5781					0.03948443635431431
DKSPITIVD	9	Unmodified	_DKSPITIVD_					0	0	0			REV__nc|ENSG00000068796|O00139-2|KIF2A	REV__nc|ENSG00000068796|O00139-2|KIF2A	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.770751953125	2	494.27149	986.528426	1.2506	0.00061814	-0.90901	-0.0004493	0.34159	0.00016884	494.2711894409812	83.144	0.42516	83.144	82.824	83.249	0					13	9	2	0	0	0	0.027462	1	8642	8642		39.253	7.723	1	786950	+		4488	16859	3503	3512	5782	5782					0.03462330486479459
DKSRKSEKV	9	Unmodified	_DKSRKSEKV_					0	0	0		nc|ENSG00000007923|Q9NVH1-3|DNAJC11;DNAJC11|p.A506Vfs*21|1|0.21|ENSG00000007923|chr1:6637205-6637206|-/GA|frameshift_variant;ENSG00000007923|ENST00000377577|DNAJC11;ENST00000465508.5_1_1:6695737-6697639:-|nuORF	nc|ENSG00000007923|Q9NVH1-3|DNAJC11	nc|ENSG00000007923|Q9NVH1-3|DNAJC11	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.3302612304688	2	538.806562	1075.59857	-0.12424	-6.6944E-05	4.0277	0.0021702	3.9035	0.0021032	538.8081778240482	83.491	1.9789	81.23	80.917	82.896	-2.261					71	41	4	0	0	0	0.027433	1	4874	4874		54.776	0	1	204090			4489	753	3504	3513	5783	5783					0.0637962887494723
DKSSGRKI	8	Unmodified	_DKSSGRKI_					0	0	0			REV__tr|A0A553SMT2|A0A553SMT2_NIACISerineproteaseOS=NialliacirculansOX=1397GN=CEQ21_23035PE=4SV=1	REV__tr|A0A553SMT2|A0A553SMT2_NIACISerineproteaseOS=NialliacirculansOX=1397GN=CEQ21_23035PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	444.7701110839844	2	445.756341	889.498129	-0.073159	-3.2611E-05	-0.32044	-0.00014284	-0.39359	-0.00017545	445.7562395307244	37.228	0.41364	37.228	36.931	37.344	0					12	8	2	0	0	0	0.028476	1	1997	1997		56.721	0	1	108710	+		4490	30367	3505	3514	5784	5784					0.048960166119513815
DKSSSGAKKKD	11	Unmodified	_DKSSSGAKKKD_					0	0	0		nc|ENSG00000104447|Q9UHF7|TRPS1;nc|ENSG00000104447|Q9UHF7-3|TRPS1;ENSG00000104447|ENST00000395715|TRPS1	nc|ENSG00000104447|Q9UHF7|TRPS1	nc|ENSG00000104447|Q9UHF7|TRPS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.8132934570312	2	575.806759	1149.59897	-0.66479	-0.00038279	1.6481	0.00094896	0.98326	0.00056617	575.8069172887089	48.451	0.21353	48.451	48.372	48.585	0					10	4	3	0	0	0	0.025594	1	3566	3566		27.047	0	1	101040			4491	2378	3506	3515	5785	5785					0.03015003804148364
DKTKPLSKV	9	Unmodified	_DKTKPLSKV_					0	0	0		ENSG00000186472|ENST00000333891|PCLO;nc|ENSG00000186472|Q9Y6V0-6|PCLO	ENSG00000186472|ENST00000333891|PCLO	ENSG00000186472|ENST00000333891|PCLO	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3279113769531	2	508.310949	1014.60735	-0.035346	-1.7967E-05	-0.31434	-0.00015978	-0.34968	-0.00017775	508.31063729579927	51.313	0.34097	51.313	51.12	51.461	0					13	7	2	0	0	0	0.027072	1	3950	3950		60.118	0	1	284090			4492	8338	3507	3516	5786	5786					0.10062602511413843
DKTMKMTY	8	Unmodified	_DKTMKMTY_					0	0	0			REV__tr|A0A553SJA1|A0A553SJA1_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16310PE=4SV=1	REV__tr|A0A553SJA1|A0A553SJA1_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16310PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	509.24029541015625	2	509.240821	1016.46709	1.5833	0.00080629	-1.7777	-0.00090529	-0.19442	-9.9005E-05	509.2399801613584	60.9	1.9539	57.832	56.783	58.737	-3.0685					78	52	2	0	0	0	0.74754	1	2111	2111		27.882	1.1893	1	24864	+		4493	29982	3508	3517	5787	5787					-0.04048640808809978
DKTNDMIKI	9	Unmodified	_DKTNDMIKI_					0	0	0			REV__tr|A0A7D6ZNF1|A0A7D6ZNF1_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16240PE=3SV=1	REV__tr|A0A7D6ZNF1|A0A7D6ZNF1_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16240PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	539.2835693359375	2	539.284074	1076.5536	0.35086	0.00018921	-3.691	-0.0019905	-3.3402	-0.0018013	539.2820901489047	84.776	0.91698	82.125	81.788	82.705	-2.6509					41	18	3	0	0	0	0.44248	1	7109	7109		47.96	4.3087	1	200850	+		4494	32118	3509	3518	5788	5788					0.01838062017395714
DKTPTITII	9	Unmodified	_DKTPTITII_					0	0	0			REV__tr|A0A7D6ZYZ8|A0A7D6ZYZ8_9CLOTATP-dependentzincmetalloproteaseFtsHOS=ClostridiumintestinaleOX=36845GN=ftsHPE=3SV=1	REV__tr|A0A7D6ZYZ8|A0A7D6ZYZ8_9CLOTATP-dependentzincmetalloproteaseFtsHOS=ClostridiumintestinaleOX=36845GN=ftsHPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	501.296875	2	501.297507	1000.58046	-1.7009	-0.00085264	1.4294	0.00071655	-0.27147	-0.00013609	501.29808755011607	120.33	1.4803	120.16	119.84	121.32	-0.17137					84	29	5	0	0	0	0.22621	2	11621	11592;11621		71.877	4.089	1	488720	+		4495	32393	3510	3519	5789;5790	5790					0.08019493900224006
DKTPTITII	9	Unmodified	_DKTPTITII_					0	0	0			REV__tr|A0A7D6ZYZ8|A0A7D6ZYZ8_9CLOTATP-dependentzincmetalloproteaseFtsHOS=ClostridiumintestinaleOX=36845GN=ftsHPE=3SV=1	REV__tr|A0A7D6ZYZ8|A0A7D6ZYZ8_9CLOTATP-dependentzincmetalloproteaseFtsHOS=ClostridiumintestinaleOX=36845GN=ftsHPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	501.29736328125	2	501.297507	1000.58046	0.92487	0.00046364	-1.2706	-0.00063695	-0.34573	-0.00017331	501.2967802453463	121.12	2.2498	120.09	119.75	122	-1.0271					110	42	5	0	0	0	0.37135	1	9289	9289		54.776	1.4249	1	667950	+		4496	32393	3510	3519	5791	5791					0.08019493900224006
DKTSIILALYF	11	Unmodified	_DKTSIILALYF_					0	0	0		tr|A0A553SLD9|A0A553SLD9_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_20440PE=4SV=1	tr|A0A553SLD9|A0A553SLD9_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_20440PE=4SV=1	tr|A0A553SLD9|A0A553SLD9_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_20440PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	428.28631591796875	3	428.579706	1282.71729	0.94375	0.00040447	0.14141	6.0607E-05	1.0852	0.00046508	428.5796301310892	105.21	1.4068	103.86	103.42	104.82	-1.3482					51	26	3	0	0	0	0.026079	1	7470	7470		19.263	6.3052	1	27545			4497	33711	3511	3520	5792	5792					0.0872398305994011
DKTSIILALYF	11	Unmodified	_DKTSIILALYF_					0	0	0		tr|A0A553SLD9|A0A553SLD9_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_20440PE=4SV=1	tr|A0A553SLD9|A0A553SLD9_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_20440PE=4SV=1	tr|A0A553SLD9|A0A553SLD9_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_20440PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	428.579706	1282.71729	0.24671	0.00010573	0.94591	0.0004054	1.1926	0.00051113	428.5801201878504	105.99	0.90857	103.97	103.5	104.41	-2.0161	0.057266	0.0004029	NaN	19.263	31	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29799			4498	33711	3511	3520							0.0872398305994011
DKTVVNFLLT	10	Unmodified	_DKTVVNFLLT_					0	0	0			REV__ENST00000395615.5_2_17:19246634-19247117:-|nuORF	REV__ENST00000395615.5_2_17:19246634-19247117:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.3185424804688	2	575.329339	1148.64412	-0.3453	-0.00019866	2.4165	0.0013903	2.0712	0.0011916	575.3309816526671	60.593	0.70571	60.593	60.153	60.859	0					20	16	2	0	0	0	0.02678	1	5330	5330		43.651	13.333	1	266440	+		4499	17899	3512	3521	5793	5793					0.07574854337326542
DKTVYYRA	8	Unmodified	_DKTVYYRA_					0	0	0			REV__tr|A0A553SMP5|A0A553SMP5_NIACIGlutamatesynthaselargesubunitOS=NialliacirculansOX=1397GN=CEQ21_22985PE=3SV=1	REV__tr|A0A553SMP5|A0A553SMP5_NIACIGlutamatesynthaselargesubunitOS=NialliacirculansOX=1397GN=CEQ21_22985PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3153076171875	2	508.263999	1014.51345	-0.52726	-0.00026799	0.54845	0.00027876	0.021196	1.0773E-05	508.2639911534642	105.78	1.1107	103.77	103.45	104.56	-2.0161					37	21	3	0	0	0	0.028476	1	9598	9598		34.173	1.3601	1	40077	+		4500	30356	3513	3522	5794	5794					0.006768834091190001
DKVAHELLIL	10	Unmodified	_DKVAHELLIL_					0	0	0		tr|A0A553SQ76|A0A553SQ76_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_20455PE=4SV=1	tr|A0A553SQ76|A0A553SQ76_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_20455PE=4SV=1	tr|A0A553SQ76|A0A553SQ76_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_20455PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.843505859375	2	575.845156	1149.67576	-2.8608	-0.0016474	-0.58729	-0.00033819	-3.4481	-0.0019856	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.82648	1	14738	14738		15.642	0	1	356230			4501	34129	3514	3523	5795	5795					0.10690847091291289
DKVDTLHYAWE	11	Unmodified	_DKVDTLHYAWE_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5;DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant;DNAH5|p.M2992Ifs*5|1|0.15|ENSG00000039139|chr5:13777331-13777332|-/AA|frameshift_variant;DNAH5|p.M2992Sfs*34|1|0.14|ENSG00000039139|chr5:13777333-13777334|-/ACAGATAGATAGATAGACAGACAGA|frameshift_variant	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.7942199707031	3	459.55422	1375.64083	0.44415	0.00020411	-2.7129	-0.0012467	-2.2687	-0.0010426	459.5528564885509	45.374	0.55104	45.374	45.159	45.71	0					28	12	3	0	0	0	0.026068	1	3158	3158		11.932	4.5326	1	579540			4502	1103	3515	3524	5796	5796					-0.03196440507349507
DKVELGVI	8	Unmodified	_DKVELGVI_					0	0	0		ENSG00000182253|ENST00000336292|SYNM	ENSG00000182253|ENST00000336292|SYNM	ENSG00000182253|ENST00000336292|SYNM	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.5797424316406	2	436.758018	871.501483	0.58563	0.00025578	2.4272	0.0010601	3.0128	0.0013159	436.76080579120026	60.8	0.19944	57.37	57.294	57.494	-3.43					5	3	2	0	0	0	0.028476	1	4126	4126		19.36	1.0356	1	6844			4503	7984	3516	3525	5797	5797					0.06059266665965879
DKVFKLEK	8	Unmodified	_DKVFKLEK_					0	0	0			REV__tr|A0A7D6ZSM5|A0A7D6ZSM5_9CLOTPyruvate,phosphatedikinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16395PE=3SV=1	REV__tr|A0A7D6ZSM5|A0A7D6ZSM5_9CLOTPyruvate,phosphatedikinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16395PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.7749938964844	2	503.800217	1005.58588	0.76678	0.0003863	-1.1269	-0.00056771	-0.36008	-0.00018141	503.79982712552635	67.076	0.59837	67.076	66.7	67.298	0					21	14	2	0	0	0	0.028476	1	6286	6286		63.306	20.91	1	338190	+		4504	32190	3517	3526	5798	5798					0.08331217482702868
DKVIIVSPIKN	11	Unmodified	_DKVIIVSPIKN_					0	0	0		tr|A0A553SIY4|A0A553SIY4_NIACIPDZdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15740PE=3SV=1	tr|A0A553SIY4|A0A553SIY4_NIACIPDZdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15740PE=3SV=1	tr|A0A553SIY4|A0A553SIY4_NIACIPDZdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15740PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	408.7323303222656	3	409.255334	1224.74417	-0.30032	-0.00012291	-2.7776	-0.0011367	-3.0779	-0.0012596	409.25422594585183	50.559	0.56615	47.386	47.205	47.771	-3.1734					15	10	2	0	0	0	0.026033	1	2957	2957		28.577	17.48	1	14937			4505	33439	3518	3527	5799	5799					0.14079091671123933
DKVINRTND	9	Unmodified	_DKVINRTND_					0	0	0			REV__tr|A0A553SRI9|A0A553SRI9_NIACICupindomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01095PE=4SV=1	REV__tr|A0A553SRI9|A0A553SRI9_NIACICupindomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01095PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.8121948242188	2	537.780544	1073.54654	-0.44216	-0.00023779	0.11774	6.3318E-05	-0.32442	-0.00017447	537.7806829484429	41.397	0.96112	41.397	41.195	42.156	0					42	21	4	0	0	0	0.027462	1	2636	2636		44.377	0	1	1259100	+		4506	30734	3519	3528	5800	5800					0.012704654611980004
DKVKISYEG	9	Unmodified	_DKVKISYEG_					0	0	0			REV__tr|A0A7D6ZWJ8|A0A7D6ZWJ8_9CLOTLPXTGcellwallanchordomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18135PE=4SV=1	REV__tr|A0A7D6ZWJ8|A0A7D6ZWJ8_9CLOTLPXTGcellwallanchordomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18135PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.3222045898438	2	519.776939	1037.53933	-2.0362	-0.0010584	-1.069	-0.00055562	-3.1052	-0.001614	520.2798735513014	107.46	0.26089	105.58	105.38	105.64	-1.8785					6	4	2	0	0	0	0.027462	1	9794	9794		35.618	12.576	1	13242	+		4507	32291	3520	3529	5801	5801					0.022057328607616
DKVLSKQEK	9	Unmodified	_DKVLSKQEK_					0	0	0			REV__tr|A0A7D6ZWJ8|A0A7D6ZWJ8_9CLOTLPXTGcellwallanchordomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18135PE=4SV=1	REV__tr|A0A7D6ZWJ8|A0A7D6ZWJ8_9CLOTLPXTGcellwallanchordomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18135PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.776123046875	2	537.811313	1073.60807	-0.99013	-0.0005325	-1.3449	-0.00072329	-2.335	-0.0012558	537.81045111948	65.869	0.31532	65.869	65.707	66.022	0					15	7	3	0	0	0	0.027462	1	6072	6072		26.693	1.1189	1	333320	+		4508	32291	3521	3530	5802	5802					0.07421397160464949
DKVSLAIAL	9	Unmodified	_DKVSLAIAL_					0	0	0		tr|A0A7D6ZJV4|A0A7D6ZJV4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10030PE=4SV=1	tr|A0A7D6ZJV4|A0A7D6ZJV4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10030PE=4SV=1	tr|A0A7D6ZJV4|A0A7D6ZJV4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10030PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.2857666015625	2	465.286943	928.559333	-0.22764	-0.00010592	-2.704	-0.0012581	-2.9317	-0.0013641	465.2855847072139	143.15	1.5248	141.71	141.35	142.88	-1.4427					87	29	5	0	0	0	0.56889	1	14057	14057		35.618	5.1146	1	628240			4509	35649	3522	3531	5803	5803					0.09219528591347625
DKVVGGVYL	9	Unmodified	_DKVVGGVYL_					0	0	0			REV__tr|A0A7D6ZHJ0|A0A7D6ZHJ0_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03175PE=3SV=1	REV__tr|A0A7D6ZHJ0|A0A7D6ZHJ0_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03175PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.5769958496094	2	475.271293	948.528032	-0.10519	-4.9994E-05	-4.1054	-0.0019512	-4.2106	-0.0020012	475.26921630395094	78.587	1.2116	76.847	76.406	77.617	-1.7398					62	23	3	0	0	0	0.027462	1	6527	6527		45.952	1.8352	1	100950	+		4510	32027	3523	3532	5804	5804					0.051709555572983845
DKWGIPSILL	10	Unmodified	_DKWGIPSILL_					0	0	0		tr|A0A7D7AHC9|A0A7D7AHC9_9CLOTBifunctionalNAD(P)H-hydraterepairenzymeOS=ClostridiumintestinaleOX=36845GN=nnrEPE=3SV=1	tr|A0A7D7AHC9|A0A7D7AHC9_9CLOTBifunctionalNAD(P)H-hydraterepairenzymeOS=ClostridiumintestinaleOX=36845GN=nnrEPE=3SV=1	tr|A0A7D7AHC9|A0A7D7AHC9_9CLOTBifunctionalNAD(P)H-hydraterepairenzymeOS=ClostridiumintestinaleOX=36845GN=nnrEPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	571.3347778320312	2	571.334424	1140.6543	2.1573	0.0012326	-3.7925	-0.0021668	-1.6352	-0.00093422	571.3321803303681	115.56	1.2955	115.56	115.16	116.46	0					67	27	4	0	0	0	0.38315	1	13195	13195		70.816	5.3508	1	2750900			4511	36271	3524	3533	5805	5805					0.08959462062580315
DKWGLVKVQR	10	Unmodified	_DKWGLVKVQR_					0	0	0			REV__nc|ENSG00000005810|O75592-2|MYCBP2	REV__nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	614.837158203125	2	614.861672	1227.70879	0.76035	0.00046751	-3.891	-0.0023924	-3.1307	-0.0019249	615.360486871247	38.056	0.34795	35.131	34.908	35.256	-2.9255					10	6	2	0	0	0	0.027268	1	1432	1432		23.523	0	1	13013	+		4512	16403	3525	3534	5806	5806					0.1040447393395425
DKWIQTIV	8	Unmodified	_DKWIQTIV_					0	0	0			REV__ENST00000594883.1_1_19:57688295-57689024:+|nuORF	REV__ENST00000594883.1_1_19:57688295-57689024:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.3035888671875	2	501.784567	1001.55458	-1.5324	-0.00076891	-2.7002	-0.0013549	-4.2326	-0.0021239	501.78300317505943	45.398	1.0413	42.36	41.971	43.013	-3.0385					42	19	4	0	0	0	0.028476	1	2342	2342		32.812	8.2932	1	354080	+		4513	27986	3526	3535	5807	5807					0.05386644448617517
DKWIWLILFW	10	Unmodified	_DKWIWLILFW_					0	0	0			REV__ENSG00000183695|ENST00000329773|MRGPRX2	REV__ENSG00000183695|ENST00000329773|MRGPRX2	MULTI-MSMS	OvCa9_classI_Rep3	3	473.9285583496094	3	473.932303	1418.77508	-6.0595	-0.0028718	-1.4613	-0.00069256	-7.5208	-0.0035643	473.93111268931267	162.59	1.1094	161.2	160.75	161.85	-1.3925					55	23	4	0	0	0	0.818	1	14153	14153		16.717	2.0237	1	97868	+		4514	22377	3527	3536	5808	5808					0.082442897760302
DKYAEERWEVV	11	Unmodified	_DKYAEERWEVV_					0	0	0		nc|ENSG00000213780|Q92759-2|GTF2H4;ENST00000487746.1_1_6:30877224-30879547:+|nuORF;ENST00000477288.5_1_6:30876177-30879964:+|nuORF;ENSG00000213780|ENST00000259895|GTF2H4	nc|ENSG00000213780|Q92759-2|GTF2H4	nc|ENSG00000213780|Q92759-2|GTF2H4	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.7651062011719	3	475.233258	1422.67794	0.27325	0.00012986	3.5997	0.0017107	3.873	0.0018406	475.2348122991373	58.234	0.46206	58.234	57.941	58.403	0					16	10	2	0	0	0	0.025864	1	4932	4932		22.562	0	1	144440			4515	9146	3528	3537	5809	5809					-0.016487689615814816
DKYEKIEEQL	10	Unmodified	_DKYEKIEEQL_					0	0	0			REV__chr16:30772190-30773977|88|16.34|0.5|5.04|+|0|RNF40,None|1	REV__chr16:30772190-30773977|88|16.34|0.5|5.04|+|0|RNF40,None|1	MULTI-MSMS	OvCa99_classI_Rep5	1	432.2239074707031	3	432.222359	1293.64525	-0.36077	-0.00015593	-0.44341	-0.00019165	-0.80418	-0.00034758	432.222200899437	59.592	2.2773	59.592	59.265	61.542	0					136	55	5	0	0	0	0.20001	1	5126	5126		94.409	5.3803	1	33411000	+		4516	15934	3529	3538	5810	5810					0.010170239155741001
DKYFSYSKL	9	Unmodified	_DKYFSYSKL_					0	0	0		SETD2|p.E983Kfs*23|1|0.1|ENSG00000181555|chr3:47121689-47121689|C/-|frameshift_variant;SETD2|p.E997Sfs*7|1|0.06|ENSG00000181555|chr3:47121646-47121647|TC/-|frameshift_variant;nc|ENSG00000181555|Q9BYW2-3|SETD2;nc|ENSG00000181555|Q9BYW2-2|SETD2;ENSG00000181555|ENST00000409792|SETD2	SETD2|p.E983Kfs*23|1|0.1|ENSG00000181555|chr3:47121689-47121689|C/-|frameshift_variant	SETD2|p.E983Kfs*23|1|0.1|ENSG00000181555|chr3:47121689-47121689|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.3226318359375	2	575.792589	1149.57063	-0.50803	-0.00029252	-2.4331	-0.0014009	-2.9411	-0.0016935	576.2923413573789	47.528	1.0421	47.528	47.03	48.073	0					35	23	2	0	0	0	0.027462	1	3379	3379		37.812	0	1	232910			4517	32813	3530	3539	5811	5811					0.0018230589485028759
DKYFTNGK	8	Unmodified	_DKYFTNGK_					0	0	0		tr|A0A553SUP2|A0A553SUP2_NIACIUvrABCsystemproteinAOS=NialliacirculansOX=1397GN=CEQ21_04190PE=3SV=1	tr|A0A553SUP2|A0A553SUP2_NIACIUvrABCsystemproteinAOS=NialliacirculansOX=1397GN=CEQ21_04190PE=3SV=1	tr|A0A553SUP2|A0A553SUP2_NIACIUvrABCsystemproteinAOS=NialliacirculansOX=1397GN=CEQ21_04190PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.7779541015625	2	486.742899	971.471246	0.12233	5.9542E-05	-3.6364	-0.00177	-3.5141	-0.0017105	486.74112516651627	47.37	0.90976	44.297	44.014	44.923	-3.0724					27	17	2	0	0	0	0.028476	1	2587	2587		37.159	0	1	48403			4518	34627	3531	3540	5812	5812					-0.015630919992418058
DKYFTYKA	8	Unmodified	_DKYFTYKA_					0	0	0			REV__ENSG00000003393|ENST00000264276|ALS2	REV__ENSG00000003393|ENST00000264276|ALS2	MULTI-MSMS	OvCa9_classI_Rep3	3	518.2623901367188	2	518.260925	1034.5073	1.0128	0.00052487	2.2119	0.0011464	3.2247	0.0016712	518.2618451712167	129.49	1.6325	128.38	127.94	129.57	-1.1121					68	32	4	0	0	0	0.73938	1	10289	10289		31.955	2.8053	1	413920	+		4519	16372	3532	3541	5813	5813					-0.00857634822386899
DKYGRKPMI	9	Unmodified	_DKYGRKPMI_					0	0	0		tr|A0A553SG88|A0A553SG88_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_10385PE=4SV=1	tr|A0A553SG88|A0A553SG88_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_10385PE=4SV=1	tr|A0A553SG88|A0A553SG88_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_10385PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.762451171875	2	554.302601	1106.59065	-0.51789	-0.00028707	-2.5195	-0.0013966	-3.0374	-0.0016836	554.3012604610946	81.011	0.58913	78.301	78.101	78.69	-2.7106					16	11	2	0	0	0	0.027418	1	6617	6617		71.877	23.962	1	21193			4520	33127	3533	3542	5814	5814					0.041617783538185904
DKYLGNEMATL	11	Unmodified	_DKYLGNEMATL_					0	0	0			REV__ENST00000215832.10_1_22:22116931-22116976:-|nuORF	REV__ENST00000215832.10_1_22:22116931-22116976:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.7513732910156	3	418.872673	1253.59619	0.36214	0.00015169	3.9058	0.001636	4.2679	0.0017877	418.8742328272691	62.124	0.591	62.124	61.869	62.46	0					28	13	3	0	0	0	0.025338	1	5524	5524		33.039	0	1	805460	+		4521	23711	3534	3543	5815	5815					-0.0204658764503165
DKYLISKV	8	Unmodified	_DKYLISKV_					0	0	0			REV__tr|A0A7D7A6C8|A0A7D7A6C8_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10035PE=4SV=1	REV__tr|A0A7D7A6C8|A0A7D7A6C8_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10035PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.2878723144531	2	483.286943	964.559333	0.35392	0.00017105	-2.2114	-0.0010687	-1.8574	-0.00089768	483.28549192022274	67.328	0.70343	67.328	66.939	67.642	0					49	17	4	0	0	0	0.028476	1	6319	6319		35.618	12.576	1	1439500	+		4522	32657	3535	3544	5816	5816					0.07563528591379054
DKYSTAGLVTR	11	Unmodified	_DKYSTAGLVTR_					0	0	0		tr|A0A7D6VTT5|A0A7D6VTT5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03870PE=4SV=1	tr|A0A7D6VTT5|A0A7D6VTT5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03870PE=4SV=1	tr|A0A7D6VTT5|A0A7D6VTT5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03870PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	403.5509338378906	3	404.21906	1209.63535	0.40244	0.00016267	-0.26902	-0.00010874	0.13342	5.3931E-05	404.2189284636378	37.008	0.68929	37.008	36.796	37.485	0					35	14	4	0	0	0	0.025638	1	2039	2039		7.6794	0	1	243560			4523	35141	3536	3545	5817	5817					0.0389188070084856
DKYWQLFEYNR	11	Unmodified	_DKYWQLFEYNR_					0	0	0			REV__nc|ENSG00000164347|Q969S9-3|GFM2	REV__nc|ENSG00000164347|Q969S9-3|GFM2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3036499023438	3	521.252652	1560.73613	-1.3905	-0.00072479	-1.8455	-0.00096196	-3.236	-0.0016868	521.2518932925302	42.869	0.94458	39.862	39.539	40.483	-3.0074					42	17	4	0	0	0	0.026302	1	2089	2089		12.433	0	1	49624	+		4524	20981	3537	3546	5818	5818					-0.02181087316284902
DKYYVKQHTN	10	Unmodified	_DKYYVKQHTN_					0	0	0			REV__nc|ENSG00000160856|Q96P31-4|FCRL3	REV__nc|ENSG00000160856|Q96P31-4|FCRL3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	432.7336120605469	3	432.55081	1294.6306	-0.092707	-4.0101E-05	-2.6427	-0.0011431	-2.7354	-0.0011832	432.5491680020301	53.82	0.76756	50.572	50.364	51.132	-3.2474					19	14	2	0	0	0	0.027115	1	3339	3339		18.531	6.5987	1	13464	+		4525	20676	3538	3547	5819	5819					-0.004930034419203366
DKYYYSLVPF	10	Unmodified	_DKYYYSLVPF_					0	0	0			REV__nc|ENSG00000003987|Q9Y216-2|MTMR7	REV__nc|ENSG00000003987|Q9Y216-2|MTMR7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	432.91644287109375	3	432.216657	1293.62814	-0.079883	-3.4527E-05	0.79253	0.00034255	0.71265	0.00030802	432.21801163169675	55.513	0.15011	52.219	52.11	52.26	-3.2944					4	2	2	0	0	0	0.026994	1	3499	3499		18.531	0	1	5211.6	+		4526	16376	3539	3548	5820	5820					-0.006928518996119237
DLAALVARPRR	11	Unmodified	_DLAALVARPRR_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	MULTI-MSMS	OvCa9_classI_Rep3	3	619.3720092773438	2	619.37802	1236.74149	-5.649	-0.0034989	-4.3697	-0.0027065	-10.019	-0.0062054	619.3752552398936	159.28	1.2139	158.02	157.66	158.88	-1.267					65	23	4	0	0	0	0.72466	1	13775	13775		19.997	0.89325	1	112740			4527	8514	3540	3549	5821	5821					0.13258681056822752
DLAAVILHV	9	Unmodified	_DLAAVILHV_					0	0	0		ENSG00000151882|ENST00000361115|CCL28	ENSG00000151882|ENST00000361115|CCL28	ENSG00000151882|ENST00000361115|CCL28	MULTI-MSMS	OvCa99_classI_Rep5	1	475.7879943847656	2	475.78711	949.559667	1.5259	0.00072598	0.99746	0.00047458	2.5233	0.0012006	475.7873046568982	138.53	0.62286	138.53	138.31	138.93	0					24	12	3	0	0	0	0.11842	1	16162	16162		92.191	36.686	1	194760			4528	5590	3541	3550	5822	5822					0.08286948311240394
DLADIAAFF	9	Unmodified	_DLADIAAFF_					0	0	0		nc|ENSG00000038382|O75962-2|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-5|TRIO	nc|ENSG00000038382|O75962-2|TRIO	nc|ENSG00000038382|O75962-2|TRIO	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.7684326171875	2	491.74765	981.480748	0.2075	0.00010204	-4.1919	-0.0020614	-3.9844	-0.0019593	491.74542680714563	68.89	1.0314	65.4	65.113	66.144	-3.4902					42	20	3	0	0	0	0.027456	1	5128	5128		47.916	32.274	1	142600			4529	1098	3542	3551	5823	5823					-0.010733237137174001
DLAFGHGGQR	10	Unmodified	_DLAFGHGGQR_					0	0	0			REV__ENST00000155926.8_1_2:12882275-12882671:+|nuORF	REV__ENST00000155926.8_1_2:12882275-12882671:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.2747802734375	2	529.262322	1056.51009	0.97313	0.00051504	-0.97616	-0.00051664	-0.0030283	-1.6028E-06	529.2618226223165	154.7	1.0544	154.7	154.32	155.38	0					23	20	2	0	0	0	0.026752	1	18138	18138		35.618	0	1	90049	+		4530	23679	3543	3552	5824	5824					-0.015903666448593867
DLAGPLLAFL	10	Unmodified	_DLAGPLLAFL_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.2815551757812	2	515.302593	1028.59063	1.4607	0.00075269	3.6019	0.0018561	5.0626	0.0026088	515.3044060419797	118.72	0.61537	118.72	118.49	119.1	0					22	12	2	0	0	0	0.026639	1	13606	13606		63.306	17.354	1	79394			4531	1141	3544	3553	5825	5825					0.07748101625475101
DLAGVPTTQ	9	Unmodified	_DLAGVPTTQ_					0	0	0		tr|A0A553SFB9|A0A553SFB9_NIACIHigh-affinityhemeuptakesystemproteinIsdEOS=NialliacirculansOX=1397GN=isdEPE=3SV=1	tr|A0A553SFB9|A0A553SFB9_NIACIHigh-affinityhemeuptakesystemproteinIsdEOS=NialliacirculansOX=1397GN=isdEPE=3SV=1	tr|A0A553SFB9|A0A553SFB9_NIACIHigh-affinityhemeuptakesystemproteinIsdEOS=NialliacirculansOX=1397GN=isdEPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.2831726074219	2	451.234907	900.455261	2.0546	0.00092711	-2.2255	-0.0010042	-0.17086	-7.7096E-05	451.2336979197185	80.8	0.46416	80.8	80.529	80.993	0					21	10	3	0	0	0	0.027462	1	8326	8326		37.159	0	1	337600			4532	33021	3545	3554	5826	5826					0.001052017638471625
DLAIWDLN	8	Unmodified	_DLAIWDLN_					0	0	0			REV__nc|ENSG00000185792|Q7RTR0-2|NLRP9	REV__nc|ENSG00000185792|Q7RTR0-2|NLRP9	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.75445556640625	2	480.245275	958.475997	-0.64883	-0.0003116	-3.2831	-0.0015767	-3.932	-0.0018883	480.24380125411864	49.514	0.48325	49.514	49.373	49.856	0					13	10	2	0	0	0	0.028476	1	3736	3736		56.721	17.468	1	159110	+		4533	22530	3546	3555	5827	5827					-0.0049020785647826415
DLAKSYGTI	9	Unmodified	_DLAKSYGTI_					0	0	0		tr|A0A7D6VP23|A0A7D6VP23_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14975PE=4SV=1	tr|A0A7D6VP23|A0A7D6VP23_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14975PE=4SV=1	tr|A0A7D6VP23|A0A7D6VP23_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14975PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.7415466308594	2	484.258382	966.502212	-0.76694	-0.0003714	3.3439	0.0016193	2.577	0.0012479	484.2594423703587	70.435	0.48892	66.954	66.738	67.227	-3.4812					16	9	3	0	0	0	0.027453	1	5327	5327		45.972	10.772	1	27842			4534	34745	3547	3556	5828	5828					0.017620613150143072
DLALLAINT	9	Unmodified	_DLALLAINT_					0	0	0		ENSG00000134262|ENST00000369569|AP4B1;ENST00000489499.5_1_1:114442984-114447339:-|nuORF;AP4B1|p.D211Afs*9|1|0.07|ENSG00000134262|chr1:113900386-113900386|T/-|frameshift_variant;nc|ENSG00000134262|Q9Y6B7-2|AP4B1;AP4B1|p.Q381Lfs*17|1|0.03|ENSG00000134262|chr1:113898774-113898775|-/CTGGGTCACAACGCTCTGCCCCCTGGCATTTA|frameshift_variant	ENSG00000134262|ENST00000369569|AP4B1	ENSG00000134262|ENST00000369569|AP4B1	MULTI-SECPEP	OvCa9_classI_Rep3	3	471.29327392578125	2	472.276575	942.538597	0.017	8.0289E-06	0.18463	8.7198E-05	0.20163	9.5226E-05	472.2765936205581	81.555	1.1097	79.232	78.802	79.912	-2.3226					38	21	2	0	0	0	0.027118	1	4586	4586		74.255	0	1	297010			4535	4275	3548	3557	5829	5829					0.06502938211713172
DLALLEVI	8	Unmodified	_DLALLEVI_					0	0	0			REV__nc|ENSG00000145147|O94813-3|SLIT2	REV__nc|ENSG00000145147|O94813-3|SLIT2	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.9089660644531	2	443.268219	884.521884	0.75108	0.00033293	-4.0139	-0.0017793	-3.2629	-0.0014463	443.2663745270812	40.815	0.62357	40.815	40.526	41.149	0					21	13	2	0	0	0	0.028476	1	2532	2532		26.796	6.3143	1	185100	+		4536	19952	3549	3558	5830	5830					0.07500437325757048
DLAPLLLHPE	10	Unmodified	_DLAPLLLHPE_					0	0	0		ENSG00000185085|ENST00000330574|INTS5	ENSG00000185085|ENST00000330574|INTS5	ENSG00000185085|ENST00000330574|INTS5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	560.2764282226562	2	559.316232	1116.61791	-1.24	-0.00069353	3.3039	0.0018479	2.064	0.0011544	559.3179237244825	108.21	0.90882	106.49	106.27	107.18	-1.7256					35	17	3	0	0	0	0.027198	1	9882	9882		19.997	11.174	1	77613			4537	8224	3550	3559	5831	5831					0.06426585165854704
DLAPLLLHPE	10	Unmodified	_DLAPLLLHPE_					0	0	0		ENSG00000185085|ENST00000330574|INTS5	ENSG00000185085|ENST00000330574|INTS5	ENSG00000185085|ENST00000330574|INTS5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	559.316232	1116.61791	0.44235	0.00024741	1.7152	0.00095935	2.1576	0.0012068	559.3171070669008	106.75	0.89256	106.44	106.13	107.02	-0.30836	-0.0060441	-0.00091158	NaN	19.997	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68572			4538	8224	3550	3559							0.06426585165854704
DLAPTSKVL	9	Unmodified	_DLAPTSKVL_					0	0	0		nc|ENSG00000116690|Q92954-5|PRG4;nc|ENSG00000116690|Q92954-4|PRG4;nc|ENSG00000116690|Q92954-3|PRG4;nc|ENSG00000116690|Q92954-6|PRG4;nc|ENSG00000116690|Q92954-2|PRG4;ENSG00000116690|ENST00000445192|PRG4	nc|ENSG00000116690|Q92954-5|PRG4	nc|ENSG00000116690|Q92954-5|PRG4	MULTI-MSMS	OvCa99_classI_Rep5	1	472.27655029296875	2	472.276575	942.538597	-0.73981	-0.00034939	0.48771	0.00023033	-0.2521	-0.00011906	472.27666538084793	69.778	1.0137	69.778	69.552	70.565	0					53	24	4	0	0	0	0.2077	1	6644	6644		75.043	3.1658	1	6636300			4539	3198	3551	3560	5832	5832					0.06502938211713172
DLARDLPIR	9	Unmodified	_DLARDLPIR_					0	0	0			REV__ENSG00000113555|ENST00000231484|PCDH12	REV__ENSG00000113555|ENST00000231484|PCDH12	MULTI-MSMS	OvCa99_classI_Rep5	1	534.8134765625	2	534.811648	1067.60874	-0.19921	-0.00010654	-0.46931	-0.00025099	-0.66852	-0.00035753	534.8111832575611	58.768	0.73601	58.768	58.237	58.973	0					41	17	4	0	0	0	0.27001	1	5012	5012		66.429	7.6473	1	1905500	+		4540	18155	3552	3561	5833	5833					0.07764236600155527
DLARDLPIR	9	Unmodified	_DLARDLPIR_					0	0	0			REV__ENSG00000113555|ENST00000231484|PCDH12	REV__ENSG00000113555|ENST00000231484|PCDH12	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	534.811648	1067.60874	-0.19921	-0.00010654	-0.46931	-0.00025099	-0.66852	-0.00035753	534.8111832575611	58.768	0.73601	58.768	58.237	58.973	0	-0.27578	-0.0009822	NaN	66.429	41	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1905500	+		4541	18155	3552	3561							0.07764236600155527
DLARDLPIR	9	Unmodified	_DLARDLPIR_					0	0	0			REV__ENSG00000113555|ENST00000231484|PCDH12	REV__ENSG00000113555|ENST00000231484|PCDH12	MULTI-MATCH	OvCa9_classI_Rep2	2		2	534.811648	1067.60874	-2.3048	-0.0012326	1.4975	0.00080088	-0.80726	-0.00043173	534.8121940287509	61.906	1.4305	59.147	58.201	59.631	-2.7593	0.10286	0.0011216	NaN	66.429	61	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70871	+		4542	18155	3552	3561							0.07764236600155527
DLARDLPIR	9	Unmodified	_DLARDLPIR_					0	0	0			REV__ENSG00000113555|ENST00000231484|PCDH12	REV__ENSG00000113555|ENST00000231484|PCDH12	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	534.811648	1067.60874	-1.2131	-0.00064877	0.22349	0.00011953	-0.98959	-0.00052924	534.8116354911459	62.675	1.2672	59.217	58.57	59.838	-3.4577	0.17292	-0.00024116	NaN	66.429	41	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173280	+		4543	18155	3552	3561							0.07764236600155527
DLAVVRAAL	9	Unmodified	_DLAVVRAAL_					0	0	0			REV__ENST00000527093.5_1_19:15235883-15236003:-|nuORF	REV__ENST00000527093.5_1_19:15235883-15236003:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	464.2823486328125	2	464.284734	926.554916	-0.49651	-0.00023052	-0.28359	-0.00013167	-0.7801	-0.00036219	464.2846418927857	96.06	2.7712	93.634	93.254	96.025	-2.4256					145	54	5	0	0	0	0.40667	1	8549	8549		51.335	3.4199	1	5572100	+		4544	27148	3553	3562	5834	5834					0.08870064168456793
DLCFFHLPP	9	Unmodified	_DLCFFHLPP_					0	0	0		ENST00000372134.5_1_10:85909951-85910536:+|nuORF	ENST00000372134.5_1_10:85909951-85910536:+|nuORF	ENST00000372134.5_1_10:85909951-85910536:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.3091430664062	2	544.76532	1087.51609	-0.65188	-0.00035512	-0.8906	-0.00048517	-1.5425	-0.00084029	544.765053377467	42.351	0.77111	42.351	42.199	42.97	0					21	17	2	0	0	0	0.027462	1	2772	2772		19.36	7.849	1	293200			4545	10973	3554	3563	5835	5835					-0.02416984457545368
DLCHQIIKNK	10	Unmodified	_DLCHQIIKNK_					0	0	0			REV__CNKSR3|p.L159H|1|0.88|ENSG00000153721|chr6:154441323-154441323|A/T|missense_variant	REV__CNKSR3|p.L159H|1|0.88|ENSG00000153721|chr6:154441323-154441323|A/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.7071533203125	3	404.557019	1210.64923	0.92668	0.00037489	-1.1841	-0.00047902	-0.25738	-0.00010413	404.55649160303454	42.687	1.4125	42.687	42.583	43.995	0					57	32	2	0	0	0	0.026803	1	2807	2807		40.058	1.3046	1	388430	+		4546	16153	3555	3564	5836	5836					0.052328349283015996
DLCKHQTI	8	Unmodified	_DLCKHQTI_					0	0	0		ENSG00000178386|ENST00000434772|ZNF223	ENSG00000178386|ENST00000434772|ZNF223	ENSG00000178386|ENST00000434772|ZNF223	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.2795715332031	2	479.244752	956.474951	-0.33576	-0.00016091	1.3865	0.00066447	1.0507	0.00050356	479.246539886169	95.506	0.29704	94.478	94.268	94.565	-1.0281					7	5	2	0	0	0	0.028476	1	8573	8573		45.952	0	1	8361.9			4547	7750	3556	3565	5837	5837					-0.005027454970218059
DLCLAFLGP	9	Unmodified	_DLCLAFLGP_					0	0	0		nc|ENSG00000143552|Q5VU65-2|NUP210L;ENSG00000143552|ENST00000368559|NUP210L	nc|ENSG00000143552|Q5VU65-2|NUP210L	nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-MSMS	OvCa99_classI_Rep5	1	474.7484436035156	2	474.746596	947.478639	0.18225	8.6524E-05	3.6982	0.0017557	3.8805	0.0018423	474.7482238337356	32.031	0.44653	32.031	31.857	32.303	0					13	8	2	0	0	0	0.25214	1	1363	1363		68.485	12.98	1	171160			4548	5070	3557	3566	5838	5838					0.002799242768332988
DLCRKNAMLI	10	Unmodified	_DLCRKNAMLI_					0	0	0			REV__nc|ENSG00000126016|Q4VCS5-2|AMOT	REV__nc|ENSG00000126016|Q4VCS5-2|AMOT	MULTI-MSMS	OvCa9_classI_Rep2	2	588.8175659179688	2	588.815018	1175.61548	0.80845	0.00047603	1.7906	0.0010544	2.5991	0.0015304	588.8159508434318	128.23	0.78979	128.01	127.74	128.53	-0.22696					46	15	4	0	0	0	0.59317	1	12574	12574		42.864	0	1	167000	+		4549	18768	3558	3567	5839	5839					0.034700901648875515
DLCWEPVEP	9	Unmodified	_DLCWEPVEP_					0	0	0			REV__chr8:124539287-124547000|190|59.73|0.53|6.81|+|0|NDUFB9,NDUFB9|1	REV__chr8:124539287-124547000|190|59.73|0.53|6.81|+|0|NDUFB9,NDUFB9|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.301513671875	2	544.241875	1086.4692	-0.64449	-0.00035076	0.12496	6.8007E-05	-0.51953	-0.00028275	544.24204456998	83.255	1.1701	80.592	80.242	81.412	-2.6629					40	23	3	0	0	0	0.027462	1	7005	7005		11.511	0	1	41449	+		4550	16104	3559	3568	5840	5840					-0.07057888799363354
DLCWVVEEGR	10	Unmodified	_DLCWVVEEGR_					0	0	0			REV__ENSG00000154237|ENST00000388948|LRRK1	REV__ENSG00000154237|ENST00000388948|LRRK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.85650634765625	3	402.525496	1204.55466	0.86	0.00034617	-2.1876	-0.00088055	-1.3276	-0.00053437	402.5246413391049	40.28	0.51213	40.28	40.154	40.666	0					14	10	2	0	0	0	0.026782	1	2437	2437		22.562	0	1	121400	+		4551	20369	3560	3569	5841	5841					-0.03943723613701877
DLDAWRVL	8	Unmodified	_DLDAWRVL_					0	0	0		nc|ENSG00000178226|Q5K4E3-2|PRSS36;nc|ENSG00000178226|Q5K4E3-3|PRSS36;ENSG00000178226|ENST00000268281|PRSS36	nc|ENSG00000178226|Q5K4E3-2|PRSS36	nc|ENSG00000178226|Q5K4E3-2|PRSS36	MULTI-SECPEP	OvCa9_classI_Rep2	2	494.29461669921875	2	494.266542	986.51853	2.0453	0.0010109	-1.8488	-0.0009138	0.19653	9.7138E-05	494.26541406039644	90.501	1.3415	89.199	88.334	89.675	-1.302					58	26	3	0	0	0	0.028476	1	8044	8044		47.916	22.465	1	48148			4552	7742	3561	3570	5842	5842					0.024731872717552505
DLDELLAGRL	10	Unmodified	_DLDELLAGRL_					0	0	0		ENST00000559530.1_1_15:32058089-32058740:-|nuORF;ENST00000488146.5_1_1:68942617-68947320:-|nuORF;nc|ENSG00000024526|Q5TB30-2|DEPDC1;chr1:68481612-68483950|382|13.57|0.32|5.39|-|ENST00000370966|DEPDC1,DEPDC1;ENSG00000024526|ENST00000456315|DEPDC1	ENST00000559530.1_1_15:32058089-32058740:-|nuORF	ENST00000559530.1_1_15:32058089-32058740:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.2599487304688	2	557.808771	1113.60299	0.12514	6.9807E-05	1.4112	0.00078721	1.5364	0.00085701	557.8094449433723	70.533	0.39465	70.533	70.328	70.722	0					13	9	2	0	0	0	0.026606	1	6774	6774		52.937	1.744	1	298610			4553	266	3562	3571	5843	5843					0.05073093297869491
DLDFDISDL	9	Unmodified	_DLDFDISDL_					0	0	0		nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13;PTPN13|p.Q2430L|1|0.11|ENSG00000163629|chr4:86809974-86809974|A/T|missense_variant	nc|ENSG00000163629|Q12923-2|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.7418212890625	2	526.742762	1051.47097	-2.0479	-0.0010787	2.3311	0.0012279	0.2832	0.00014918	526.7436709093864	118.89	1.5117	117.54	117.21	118.72	-1.3444					69	28	4	0	0	0	0.24951	1	11141	11141		68.787	22.815	1	176740			4554	6337	3563	3572	5844	5844					-0.052705565097539875
DLDGVSRQQN	10	Unmodified	_DLDGVSRQQN_					0	0	0		ENSG00000174705|ENST00000311601|SH3PXD2B	ENSG00000174705|ENST00000311601|SH3PXD2B	ENSG00000174705|ENST00000311601|SH3PXD2B	MULTI-SECPEP	OvCa9_classI_Rep2	2	565.3067016601562	2	566.273084	1130.53161	-0.13404	-7.5905E-05	3.5069	0.0019858	3.3728	0.0019099	566.2747926960831	97.605	1.1764	96.646	96.266	97.442	-0.95857					44	23	3	0	0	0	0.027149	1	8799	8799		69.628	0	1	57935			4555	7483	3564	3573	5845	5845					-0.02843026406799254
DLDKLRFIL	9	Unmodified	_DLDKLRFIL_					0	0	0			REV__nc|ENSG00000111364|Q8NHQ9-2|DDX55	REV__nc|ENSG00000111364|Q8NHQ9-2|DDX55	MULTI-SECPEP	OvCa9_classI_Rep2	2	567.7767333984375	2	566.839874	1131.66519	-0.81337	-0.00046105	0.57987	0.0003287	-0.2335	-0.00013236	566.8400716815876	121.57	0.49483	121.37	121.15	121.64	-0.19718					14	9	2	0	0	0	0.027462	1	11752	11752		44.117	6.3053	1	18068	+		4556	16281	3565	3574	5846	5846					0.10462864436863129
DLDKNYEL	8	Unmodified	_DLDKNYEL_					0	0	0		CON__P07224	CON__P07224	CON__P07224	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.30645751953125	2	505.245472	1008.47639	2.5887	0.0013079	-3.0262	-0.001529	-0.43754	-0.00022107	505.24366578229063	94.339	0.94096	94.339	93.964	94.905	0					33	21	2	0	0	0	0.028476	1	10291	10291		51.335	0	1	366800		+	4557	623	3566	3575	5847	5847					-0.02750832927290503
DLDKVLAV	8	Unmodified	_DLDKVLAV_					0	0	0		nc|ENSG00000258366|Q9NZ71|RTEL1;nc|ENSG00000258366|Q9NZ71-7|RTEL1;ENSG00000258366|ENST00000360203|RTEL1;nc|ENSG00000258366|Q9NZ71-2|RTEL1;tr|A0A553SG98|A0A553SG98_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_10465PE=3SV=1;ENST00000496816.5_1_20:62325699-62327208:+|nuORF;nc|ENSG00000258366|Q9NZ71-5|RTEL1;ENST00000496281.1_1_20:62323608-62327208:+|nuORF;ENST00000480273.5_1_20:62319266-62327135:+|nuORF;nc|ENSG00000258366|Q9NZ71-9|RTEL1	nc|ENSG00000258366|Q9NZ71|RTEL1	nc|ENSG00000258366|Q9NZ71|RTEL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	437.27392578125	2	436.758018	871.501483	-0.39043	-0.00017053	1.046	0.00045684	0.65555	0.00028631	436.7582563056701	69.45	1.5636	65.968	65.663	67.227	-3.4812					58	31	3	0	0	0	0.028476	1	5325	5325		35.618	5.1146	1	167520			4558	9478	3567	3576	5848	5848					0.060592666659431416
DLDNATEVNP	10	Unmodified	_DLDNATEVNP_					0	0	0		nc|ENSG00000136155|O95171-3|SCEL;nc|ENSG00000136155|O95171-2|SCEL;ENSG00000136155|ENST00000349847|SCEL	nc|ENSG00000136155|O95171-3|SCEL	nc|ENSG00000136155|O95171-3|SCEL	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.3203735351562	2	544.248743	1086.48293	-0.25246	-0.0001374	3.2907	0.0017909	3.0382	0.0016535	544.2504534117808	60.371	0.66253	60.371	60.153	60.816	0					35	15	4	0	0	0	0.026653	1	5285	5285		58.23	2.7257	1	1230800			4559	4465	3568	3577	5849	5849					-0.05684939766570096
DLDNPQENIK	10	Unmodified	_DLDNPQENIK_					0	0	0		ENST00000468312.1_1_17:40370167-40384145:-|nuORF;ENSG00000173757|ENST00000293328|STAT5B	ENST00000468312.1_1_17:40370167-40384145:-|nuORF	ENST00000468312.1_1_17:40370167-40384145:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	593.9927978515625	2	593.290942	1184.56733	-0.62812	-0.00037266	2.928	0.0017372	2.2999	0.0013645	593.2925161382854	71.54	0.87949	68.084	67.825	68.704	-3.4563					38	17	3	0	0	0	0.026681	1	5445	5445		29.17	0	1	62894			4560	7411	3569	3578	5850	5850					-0.017569889498190605
DLDQKWQL	8	Unmodified	_DLDQKWQL_					0	0	0			REV__ENSG00000154174|ENST00000284320|TOMM70	REV__ENSG00000154174|ENST00000284320|TOMM70	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.2913818359375	2	523.269281	1044.52401	0.063405	3.3178E-05	1.9843	0.0010383	2.0477	0.0010715	523.2700189856772	81.268	0.66057	81.268	80.993	81.654	0					29	15	2	0	0	0	0.028476	1	8350	8350		60.972	16.855	1	5412100	+		4561	20364	3570	3579	5851	5851					0.0035286606357658457
DLDRQLEEL	9	Unmodified	_DLDRQLEEL_					0	0	0			REV__ENSG00000185219|ENST00000396077|ZNF445	REV__ENSG00000185219|ENST00000396077|ZNF445	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.7870483398438	2	565.788035	1129.56152	0.0093763	5.305E-06	-0.41898	-0.00023706	-0.40961	-0.00023175	565.7877638346957	95.723	2.1069	93.298	92.604	94.711	-2.4256					100	41	3	0	0	0	0.37182	1	8447	8447		54.722	3.1946	1	600000	+		4562	22486	3571	3580	5852	5852					0.0019191253854842216
DLDRRLATI	9	Unmodified	_DLDRRLATI_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.K3074Sfs*10|1|0.27|ENSG00000187775|chr17:78461662-78461662|T/-|frameshift_variant;DNAH17|p.A3303Gfs*10|1|0.11|ENSG00000187775|chr17:78458634-78458635|-/ACACATCCACATCTGGCAC|frameshift_variant;nc|ENSG00000187775|Q9UFH2-4|DNAH17;ENST00000589793.1_1_17:76539878-76567391:-|nuORF	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.2920532226562	2	536.809105	1071.60366	-0.29152	-0.00015649	3.4833	0.0018698	3.1917	0.0017133	537.8117409109882	71.105	0.78616	68.598	68.229	69.016	-2.5071					29	14	3	0	0	0	0.027426	1	5742	5742		73.975	0	1	40923			4563	8432	3572	3581	5853	5853					0.07071932737562747
DLDSYKSN	8	Unmodified	_DLDSYKSN_					0	0	0		nc|ENSG00000170959|M0R2J8|DCDC1;ENSG00000170959|ENST00000684477|DCDC1;nc|ENSG00000170959|M0R2J8-2|DCDC1;nc|ENSG00000170959|M0R2J8-3|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.75970458984375	2	471.214172	940.413791	2.1744	0.0010246	4.001	0.0018853	6.1754	0.0029099	471.2159146778798	85.11	0.45236	85.11	84.882	85.334	0					27	10	3	0	0	0	0.028476	1	8942	8942		49.442	0	1	1120700			4564	7158	3573	3582	5854	5854					-0.05879978995471902
DLDWEVRAQ	9	Unmodified	_DLDWEVRAQ_					0	0	0		ENSG00000106009|ENST00000340611|BRAT1;nc|ENSG00000106009|Q6PJG6-3|BRAT1;ENST00000469750.5_1_7:2577705-2579570:-|nuORF	ENSG00000106009|ENST00000340611|BRAT1	ENSG00000106009|ENST00000340611|BRAT1	MULTI-SECPEP	OvCa9_classI_Rep3	3	565.3092651367188	2	566.275095	1130.53564	-0.46689	-0.00026439	0.68372	0.00038718	0.21683	0.00012279	566.2751283720653	98.355	1.0339	96.596	96.365	97.399	-1.7595					46	19	3	0	0	0	0.027343	1	6544	6544		68.787	10.005	1	77245			4565	2522	3574	3583	5855	5855					-0.02440936913103542
DLDYDFQRD	9	Unmodified	_DLDYDFQRD_					0	0	0		nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;nc|ENSG00000092199|P07910-3|HNRNPC;ENST00000571636.1_1_16:11336795-11337332:+|nuORF	nc|ENSG00000092199|P07910-4|HNRNPC	nc|ENSG00000092199|P07910-4|HNRNPC	MULTI-MSMS	OvCa99_classI_Rep5	1	593.7559814453125	2	593.754192	1185.49383	1.8102	0.0010748	0.26466	0.00015714	2.0749	0.001232	593.7538694349549	87.561	0.62404	87.561	87.257	87.881	0					27	14	3	0	0	0	0.1574	1	9271	9271		83.647	30.71	1	665050			4566	1889	3575	3584	5856	5856					-0.09149537392295315
DLEEAFKLF	9	Unmodified	_DLEEAFKLF_					0	0	0		ENSG00000186871|ENST00000334463|ERCC6L	ENSG00000186871|ENST00000334463|ERCC6L	ENSG00000186871|ENST00000334463|ERCC6L	MULTI-MSMS	OvCa99_classI_Rep5	1	556.2872924804688	2	556.28714	1110.55973	0.51795	0.00028813	-3.5931	-0.0019988	-3.0751	-0.0017107	556.2850269164804	73.81	0.9176	73.81	73.56	74.478	0					68	23	4	0	0	0	0.27001	1	7247	7247		66.429	10.925	1	10937000			4567	8370	3576	3585	5857	5857					0.008869035205634646
DLEEAKDTL	9	Unmodified	_DLEEAKDTL_					0	0	0		tr|A0A553SP32|A0A553SP32_NIACIChromosomepartitionproteinSmcOS=NialliacirculansOX=1397GN=smcPE=3SV=1	tr|A0A553SP32|A0A553SP32_NIACIChromosomepartitionproteinSmcOS=NialliacirculansOX=1397GN=smcPE=3SV=1	tr|A0A553SP32|A0A553SP32_NIACIChromosomepartitionproteinSmcOS=NialliacirculansOX=1397GN=smcPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.2398681640625	2	517.256037	1032.49752	-0.31612	-0.00016352	2.6139	0.001352	2.2977	0.0011885	517.2567455298887	47.287	0.50892	44.215	43.911	44.42	-3.0724					14	9	2	0	0	0	0.027455	1	2541	2541		34.173	9.6534	1	23778			4568	33998	3577	3586	5858	5858					-0.017428676184181313
DLEEALGR	8	Unmodified	_DLEEALGR_					0	0	0		ENSG00000226321|ENST00000690015|CROCC2	ENSG00000226321|ENST00000690015|CROCC2	ENSG00000226321|ENST00000690015|CROCC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	451.7562255859375	2	451.732532	901.45051	0.25041	0.00011312	-0.039343	-1.7772E-05	0.21106	9.5344E-05	451.73240867379144	60.669	0.89706	60.669	60.392	61.289	0					38	20	3	0	0	0	0.028476	1	5336	5336		76.774	37.968	1	1759700			4569	9270	3578	3587	5859	5859					-0.0041568237888895965
DLEELLRIT	9	Unmodified	_DLEELLRIT_					0	0	0			REV__nc|ENSG00000115266|O95996-2|APC2	REV__nc|ENSG00000115266|O95996-2|APC2	MULTI-SECPEP	OvCa9_classI_Rep3	3	550.3274536132812	2	551.311146	1100.60774	-1.5421	-0.0008502	1.1335	0.00062493	-0.40861	-0.00022527	551.311643355448	85.186	1.4395	82.965	82.648	84.087	-2.2204					72	28	4	0	0	0	0.027418	1	5122	5122		62.107	7.3311	1	597050	+		4570	18228	3579	3588	5860	5860					0.06145977440610295
DLEGLQVWW	9	Unmodified	_DLEGLQVWW_					0	0	0		ENSG00000166183|ENST00000551177|ASPG;nc|ENSG00000166183|Q86U10-3|ASPG	ENSG00000166183|ENST00000551177|ASPG	ENSG00000166183|ENST00000551177|ASPG	MULTI-SECPEP	OvCa9_classI_Rep4_	4	572.3154296875	2	573.284931	1144.55531	-0.48841	-0.00028	2.0796	0.0011922	1.5912	0.00091218	573.2857730657482	105.54	1.3083	103.52	102.9	104.21	-2.0161					55	25	3	0	0	0	0.027462	1	9533	9533		23.042	0	1	214900			4571	6649	3580	3589	5861	5861					-0.011185609023414145
DLEKEMLHS	9	Unmodified	_DLEKEMLHS_					0	0	0			REV__ENSG00000100211|ENST00000216029|CBY1	REV__ENSG00000100211|ENST00000216029|CBY1	MULTI-SECPEP	OvCa9_classI_Rep3	3	550.3280029296875	2	551.265881	1100.51721	-1.5117	-0.00083337	-2.9844	-0.0016452	-4.4961	-0.0024786	551.264446338603	84.187	0.80808	81.926	81.7	82.508	-2.261					30	16	3	0	0	0	0.027462	1	4926	4926		27.882	1.1893	1	46868	+		4572	16353	3581	3590	5862	5862					-0.029028148793031505
DLEKKRLARLE	11	Unmodified	_DLEKKRLARLE_					0	0	0			REV__ENSG00000198954|ENST00000361983|KIFBP	REV__ENSG00000198954|ENST00000361983|KIFBP	MULTI-MSMS	OvCa9_classI_Rep2	2	457.60614013671875	3	457.608659	1369.80415	-3.2547	-0.0014894	1.5597	0.00071375	-1.695	-0.00077564	457.60942916936364	154.63	1.9214	154.4	153.61	155.53	-0.22696					87	47	3	0	0	0	0.7252	1	15769	15769		12.957	1.8607	1	20922	+		4573	23100	3582	3591	5863	5863					0.1340378233435331
DLEKSKIKT	9	Unmodified	_DLEKSKIKT_					0	0	0		ENSG00000159086|ENST00000331923|PAXBP1;nc|ENSG00000159086|Q9Y5B6-2|PAXBP1;ENST00000464256.1_1_21:34132086-34144033:-|nuORF;nc|ENSG00000159086|Q9Y5B6-3|PAXBP1;nc|ENSG00000159086|Q9Y5B6-4|PAXBP1	ENSG00000159086|ENST00000331923|PAXBP1	ENSG00000159086|ENST00000331923|PAXBP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.7908935546875	2	531.313689	1060.61282	0.50628	0.00026899	3.3006	0.0017537	3.8069	0.0020227	531.3153326904124	161.33	1.868	161.33	160.66	162.53	0					80	36	3	0	0	0	0.027462	1	18860	18860		26.693	0	1	636100			4574	5986	3583	3592	5864	5864					0.08494281303251228
DLELCEKYG	9	Unmodified	_DLELCEKYG_					0	0	0		tr|A0A553SF93|A0A553SF93_NIACISugarphosphateisomerase/epimeraseOS=NialliacirculansOX=1397GN=CEQ21_08485PE=4SV=1	tr|A0A553SF93|A0A553SF93_NIACISugarphosphateisomerase/epimeraseOS=NialliacirculansOX=1397GN=CEQ21_08485PE=4SV=1	tr|A0A553SF93|A0A553SF93_NIACISugarphosphateisomerase/epimeraseOS=NialliacirculansOX=1397GN=CEQ21_08485PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.3053588867188	2	535.247157	1068.47976	-0.35757	-0.00019139	-2.3343	-0.0012494	-2.6919	-0.0014408	535.2456827786765	51.585	0.66275	51.585	51.332	51.995	0					26	15	2	0	0	0	0.027232	1	4008	4008		76.774	2.7994	1	592170			4575	33008	3584	3593	5865	5865					-0.05173906144932516
DLFALVQLL	9	Unmodified	_DLFALVQLL_					0	0	0			REV__tr|A0A553SL96|A0A553SL96_NIACIDnaDdomainproteinOS=NialliacirculansOX=1397GN=CEQ21_20210PE=4SV=1	REV__tr|A0A553SL96|A0A553SL96_NIACIDnaDdomainproteinOS=NialliacirculansOX=1397GN=CEQ21_20210PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7584228515625	2	516.310418	1030.60628	2.2892	0.001182	-0.16736	-8.641E-05	2.1219	0.0010955	516.3100675886411	121.51	0.41507	121.51	121.25	121.66	0					10	8	2	0	0	0	0.027462	1	13979	13979		21.96	9.753	1	39263	+		4576	30204	3585	3594	5866	5866					0.09220388142512093
DLFFDAPNN	9	Unmodified	_DLFFDAPNN_					0	0	0			REV__nc|ENSG00000118777|Q9UNQ0-2|ABCG2	REV__nc|ENSG00000118777|Q9UNQ0-2|ABCG2	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.8466186523438	2	526.737814	1051.46108	2.5759	0.0013568	0.21233	0.00011184	2.7883	0.0014687	526.7376538104988	90.118	0.6505	90.118	89.891	90.541	0					39	15	3	0	0	0	0.027462	1	9637	9637		38.806	1.647	1	602550	+		4577	18415	3586	3595	5867	5867					-0.06259699724478196
DLFKKLILDE	10	Unmodified	_DLFKKLILDE_					0	0	0			REV__tr|A0A7D7A0S9|A0A7D7A0S9_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11060PE=4SV=1	REV__tr|A0A7D7A0S9|A0A7D7A0S9_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11060PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	617.8362426757812	2	617.358096	1232.70164	2.812	0.001736	2.2355	0.0013801	5.0474	0.0031161	617.3608976861515	102.4	0.80782	102.4	102.17	102.98	0					30	18	2	0	0	0	0.026714	1	11450	11450		16.473	0.83134	1	510070	+		4578	32457	3587	3596	5868	5868					0.09459696542921847
DLFLDLYMQKW	11	Unmodified	_DLFLDLYMQKW_					0	0	0			REV__nc|ENSG00000149970|Q8WXI2-5|CNKSR2	REV__nc|ENSG00000149970|Q8WXI2-5|CNKSR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.25396728515625	3	491.247851	1470.72172	-0.096082	-4.72E-05	4.246	0.0020858	4.1499	0.0020386	491.2496531648756	65.001	0.39624	65.001	64.834	65.231	0					16	9	2	0	0	0	0.026145	1	5918	5918		17.833	1.9125	1	452720	+		4579	20180	3588	3597	5869	5869					0.005191242112005057
DLFLIIGEER	10	Unmodified	_DLFLIIGEER_					0	0	0			REV__tr|A0A553SQS0|A0A553SQS0_NIACISensordomain-containingdiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_07075PE=4SV=1	REV__tr|A0A553SQS0|A0A553SQS0_NIACISensordomain-containingdiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_07075PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	402.58734130859375	3	402.223923	1203.64994	1.9853	0.00079852	3.2046	0.001289	5.1899	0.0020875	402.55974182104245	67.049	0.25467	64.162	64.086	64.341	-2.8873					5	4	2	0	0	0	0.027142	1	2813	2813		27.047	3.5246	1	3911.8	+		4580	30651	3589	3598	5870	5870					0.05625952849004534
DLFLLSSQ	8	Unmodified	_DLFLLSSQ_					0	0	0		nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B	nc|ENSG00000138802|O95487-2|SEC24B	nc|ENSG00000138802|O95487-2|SEC24B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.3246765136719	2	461.74765	921.480748	-0.91941	-0.00042453	2.7806	0.0012839	1.8612	0.0008594	461.74845180442946	82.962	0.58389	80.279	79.979	80.563	-2.683					15	11	2	0	0	0	0.028476	1	6867	6867		39.253	5.0803	1	22258			4581	4735	3590	3599	5871	5871					0.016866762862946416
DLFNQAAGDAI	11	Unmodified	_DLFNQAAGDAI_					0	0	0		ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3	ENSG00000013375|ENST00000513973|PGM3	ENSG00000013375|ENST00000513973|PGM3	MULTI-MSMS	OvCa9_classI_Rep3	3	567.7760009765625	2	567.774928	1133.5353	1.1775	0.00066856	2.2455	0.0012749	3.423	0.0019435	567.776073067757	122.33	1.7732	121.3	121.01	122.78	-1.0286					90	33	4	0	0	0	0.39237	1	9401	9401		61.691	1.573	1	552320			4582	985	3591	3600	5872	5872					-0.026123566329715686
DLFPLLAGLV	10	Unmodified	_DLFPLLAGLV_					0	0	0			REV__RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	REV__RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7980346679688	2	529.318243	1056.62193	0.064967	3.4388E-05	-4.0581	-0.002148	-3.9932	-0.0021137	529.3166427072334	101.61	0.33702	101.61	101.4	101.73	0					12	7	3	0	0	0	0.027648	1	11315	11315		76.847	44.034	1	172880	+		4583	21802	3592	3601	5873	5873					0.09588674659562457
DLFPRYGTY	9	Unmodified	_DLFPRYGTY_					0	0	0			REV__nc|ENSG00000140279|Q9NRD8|DUOX2;REV__ENSG00000137857|ENST00000389037|DUOX1	REV__nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.308837890625	2	566.277106	1130.53966	0.57608	0.00032622	-3.7193	-0.0021061	-3.1432	-0.0017799	566.2746427575236	98.863	0.9325	96.538	96.279	97.212	-2.3253					37	17	3	0	0	0	0.02741	1	8804	8804		60.972	0	1	79974	+		4584	19658;19490	3593	3602	5874	5874					-0.02038847419362355
DLFRLVVQH	9	Unmodified	_DLFRLVVQH_					0	0	0			REV__ENST00000230895.10_2_5:10680115-10680181:-|nuORF	REV__ENST00000230895.10_2_5:10680115-10680181:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	563.8216552734375	2	563.822015	1125.62948	-1.0763	-0.00060683	0.60197	0.00033941	-0.4743	-0.00026742	563.8222320836983	77.244	3.4816	74.872	74.348	77.829	-2.3715					149	68	6	0	0	0	0.50149	1	4046	4046		42.396	0.96952	1	1334000	+		4585	23790	3594	3603	5875	5875					0.0716882697984147
DLFTAHNF	8	Unmodified	_DLFTAHNF_					0	0	0		SLC39A14-PPP3CC|3|fusion;SLC39A14-PPP3CC|1|fusion;SLC39A14-PPP3CC|2|fusion;nc|ENSG00000104635|Q15043-2|SLC39A14;ENSG00000104635|ENST00000381237|SLC39A14;SLC39A14-PPP3CC|6|fusion;SLC39A14-PPP3CC|4|fusion;SLC39A14-PPP3CC|5|fusion;nc|ENSG00000104635|Q15043-3|SLC39A14	SLC39A14-PPP3CC|3|fusion	SLC39A14-PPP3CC|3|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	482.7601013183594	2	482.729792	963.445031	-0.25666	-0.0001239	-4.2988	-0.0020751	-4.5554	-0.002199	482.7278595604949	58.249	0.49928	54.904	54.698	55.197	-3.3449					15	9	2	0	0	0	0.028476	1	3801	3801		47.916	10.756	1	25101			4586	32832	3595	3604	5876	5876					-0.0381536117071164
DLFTQKILI	9	Unmodified	_DLFTQKILI_					0	0	0		tr|A0A7D6ZIZ6|A0A7D6ZIZ6_9CLOTGlutamine-dependentNAD(+)synthetaseOS=ClostridiumintestinaleOX=36845GN=nadEPE=3SV=1	tr|A0A7D6ZIZ6|A0A7D6ZIZ6_9CLOTGlutamine-dependentNAD(+)synthetaseOS=ClostridiumintestinaleOX=36845GN=nadEPE=3SV=1	tr|A0A7D6ZIZ6|A0A7D6ZIZ6_9CLOTGlutamine-dependentNAD(+)synthetaseOS=ClostridiumintestinaleOX=36845GN=nadEPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.865234375	2	545.828975	1089.6434	1.4357	0.00078364	-4.366	-0.0023831	-2.9303	-0.0015994	546.3279503429962	112.07	0.59659	112.07	111.93	112.52	0					17	12	2	0	0	0	0.027441	1	12758	12758		55.504	0.72789	1	140950			4587	35632	3596	3605	5877	5877					0.10216059688286805
DLFTWGGLQGG	11	Unmodified	_DLFTWGGLQGG_					0	0	0			REV__ENST00000318445.10_1_15:92706619-92706775:+|nuORF	REV__ENST00000318445.10_1_15:92706619-92706775:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.6341552734375	2	575.780013	1149.54547	2.006	0.001155	0.11577	6.6656E-05	2.1218	0.0012217	575.7799402927562	86.944	0.41478	86.944	86.72	87.135	0					23	9	3	0	0	0	0.025529	1	9216	9216		67.494	3.2864	1	569400	+		4588	24424	3597	3606	5878	5878					-0.023317489077271603
DLFWLIAL	8	Unmodified	_DLFWLIAL_					0	0	0			REV__RANBP17|p.V862Afs*8|1|0.46|ENSG00000204764|chr5:171241086-171241108|AATGTACTCCAGGCTTTTGTCAA/-|frameshift_variant	REV__RANBP17|p.V862Afs*8|1|0.46|ENSG00000204764|chr5:171241086-171241108|AATGTACTCCAGGCTTTTGTCAA/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.2673034667969	2	495.786579	989.558604	-0.91314	-0.00045272	-3.3691	-0.0016703	-4.2822	-0.0021231	495.78465888728357	92.644	0.85748	90.137	89.806	90.664	-2.5072					40	16	4	0	0	0	0.028476	1	8080	8080		54.765	29.191	1	207540	+		4589	23184	3598	3607	5879	5879					0.0634073394232928
DLFWLIAL	8	Unmodified	_DLFWLIAL_					0	0	0			REV__RANBP17|p.V862Afs*8|1|0.46|ENSG00000204764|chr5:171241086-171241108|AATGTACTCCAGGCTTTTGTCAA/-|frameshift_variant	REV__RANBP17|p.V862Afs*8|1|0.46|ENSG00000204764|chr5:171241086-171241108|AATGTACTCCAGGCTTTTGTCAA/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	495.786579	989.558604	1.1666	0.00057837	-5.3381	-0.0026466	-4.1716	-0.0020682	495.7836182874293	91.552	1.3724	90.316	89.901	91.273	-1.2355	0.12781	-0.0010773	NaN	54.765	61	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141890	+		4590	23184	3598	3607							0.0634073394232928
DLFWLIAL	8	Unmodified	_DLFWLIAL_					0	0	0			REV__RANBP17|p.V862Afs*8|1|0.46|ENSG00000204764|chr5:171241086-171241108|AATGTACTCCAGGCTTTTGTCAA/-|frameshift_variant	REV__RANBP17|p.V862Afs*8|1|0.46|ENSG00000204764|chr5:171241086-171241108|AATGTACTCCAGGCTTTTGTCAA/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	495.786579	989.558604	-1.3234	-0.00065614	-4.6397	-0.0023003	-5.9631	-0.0029564	495.7840715020638	92.136	0.9903	90.112	89.737	90.727	-2.0241	-0.076387	-0.00038478	NaN	54.765	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	237780	+		4591	23184	3598	3607							0.0634073394232928
DLFWSLAL	8	Unmodified	_DLFWSLAL_					0	0	0			REV__LTR8_dup2971|chr17:8380695-8381392:+|1.1462445818792564|0.2447948664736123|2.23|429.0|35|1|anti-sense	REV__LTR8_dup2971|chr17:8380695-8381392:+|1.1462445818792564|0.2447948664736123|2.23|429.0|35|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	482.76025390625	2	482.760561	963.506569	2.1391	0.0010327	-3.0117	-0.001454	-0.87261	-0.00042126	482.7588804234167	57.803	3.1186	54.676	53.456	56.575	-3.1264					158	85	3	0	0	0	0.73626	1	1774	1774		33.516	1.5607	1	89902	+		4592	28632	3599	3608	5880	5880					0.023355705285666772
DLFWSLAL	8	Unmodified	_DLFWSLAL_					0	0	0			REV__LTR8_dup2971|chr17:8380695-8381392:+|1.1462445818792564|0.2447948664736123|2.23|429.0|35|1|anti-sense	REV__LTR8_dup2971|chr17:8380695-8381392:+|1.1462445818792564|0.2447948664736123|2.23|429.0|35|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.29339599609375	2	482.760561	963.506569	0.076322	3.6845E-05	-3.6031	-0.0017394	-3.5268	-0.0017026	482.75873571703283	90.402	0.71109	87.827	87.501	88.212	-2.575					20	13	2	0	0	0	0.028476	1	7821	7821		40.573	7.057	1	23155	+		4593	28632	3599	3608	5881	5881					0.023355705285666772
DLGDVLEEMG	10	Unmodified	_DLGDVLEEMG_					0	0	0		ENST00000555056.1_1_14:94770757-94780257:-|nuORF;ENSG00000170099|ENST00000341584|SERPINA6	ENST00000555056.1_1_14:94770757-94780257:-|nuORF	ENST00000555056.1_1_14:94770757-94780257:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	539.7677612304688	2	539.242072	1076.46959	-0.44172	-0.00023819	0.83148	0.00044837	0.38976	0.00021018	539.2414511995042	122.65	0.29672	121.28	121.01	121.31	-1.3666					6	5	2	0	0	0	0.027174	1	11578	11578		20.947	0	1	7461.1			4594	7073	3600	3609	5882	5882					-0.06558513870163551
DLGERITL	8	Unmodified	_DLGERITL_					0	0	0		ENSG00000134504|ENST00000580059|KCTD1;ENST00000577255.1_1_18:24039580-24056655:-|nuORF;nc|ENSG00000134504|Q719H9|KCTD1	ENSG00000134504|ENST00000580059|KCTD1	ENSG00000134504|ENST00000580059|KCTD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.28387451171875	2	458.758549	915.502546	-0.36511	-0.0001675	0.53319	0.0002446	0.16807	7.7106E-05	458.75850848440734	51.875	1.2615	48.701	48.224	49.486	-3.1734					34	24	2	0	0	0	0.028476	1	3017	3017		35.618	3.6634	1	65085			4595	4302	3601	3610	5883	5883					0.04141481034844219
DLGFIGPGPA	10	Unmodified	_DLGFIGPGPA_					0	0	0		tr|A0A7D6ZHR5|A0A7D6ZHR5_9CLOTAliphaticsulfonateABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00550PE=3SV=1	tr|A0A7D6ZHR5|A0A7D6ZHR5_9CLOTAliphaticsulfonateABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00550PE=3SV=1	tr|A0A7D6ZHR5|A0A7D6ZHR5_9CLOTAliphaticsulfonateABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00550PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.2956237792969	2	472.247818	942.481082	2.1668	0.0010233	0.44144	0.00020847	2.6082	0.0012317	472.24788484477966	92.865	0.66924	92.865	92.677	93.346	0					22	15	2	0	0	0	0.026697	1	10055	10055		37.159	1.5408	1	394310			4596	35586	3602	3611	5884	5884					0.007540960061419355
DLGLGTRLH	9	Unmodified	_DLGLGTRLH_					0	0	0		chr2:84905718-84905826|150|15.53|0.33|5.55|+|2|TMSB10,None|1	chr2:84905718-84905826|150|15.53|0.33|5.55|+|2|TMSB10,None|1	chr2:84905718-84905826|150|15.53|0.33|5.55|+|2|TMSB10,None|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.72442626953125	2	491.277441	980.540328	-0.51995	-0.00025544	0.38819	0.00019071	-0.13176	-6.4729E-05	491.277523549237	40.643	0.31618	40.643	40.479	40.795	0					9	6	2	0	0	0	0.027462	1	2484	2484		14.865	0	1	69820			4597	449	3603	3612	5885	5885					0.049279920203161964
DLGLLIFSIL	10	Unmodified	_DLGLLIFSIL_					0	0	0			REV__ENSG00000277481|ENST00000620267|PKD1L3	REV__ENSG00000277481|ENST00000620267|PKD1L3	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.7700805664062	2	552.339175	1102.6638	1.9548	0.0010797	-2.8412	-0.0015693	-0.8864	-0.00048959	552.3376285733161	76.563	0.3564	76.563	76.443	76.799	0					14	8	2	0	0	0	0.027056	1	7714	7714		20.947	0.95016	1	446110	+		4598	23634	3604	3613	5886	5886					0.11657230348077974
DLGPLQPGR	9	Unmodified	_DLGPLQPGR_					0	0	0		ENST00000544158.2_1_19:36259262-36259406:+|nuORF	ENST00000544158.2_1_19:36259262-36259406:+|nuORF	ENST00000544158.2_1_19:36259262-36259406:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.9611511230469	2	476.764166	951.513779	-0.66723	-0.00031811	-3.0517	-0.0014549	-3.7189	-0.0017731	476.76257048037763	104.83	1.0887	104.25	103.97	105.06	-0.57639					35	21	3	0	0	0	0.027441	1	9811	9811		58.782	7.4465	1	41404			4599	13502	3605	3614	5887	5887					0.036083031289990686
DLGPLQPGR	9	Unmodified	_DLGPLQPGR_					0	0	0		ENST00000544158.2_1_19:36259262-36259406:+|nuORF	ENST00000544158.2_1_19:36259262-36259406:+|nuORF	ENST00000544158.2_1_19:36259262-36259406:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	476.764166	951.513779	1.1571	0.00055167	-4.9285	-0.0023497	-3.7714	-0.0017981	476.76162867382294	105.64	0.83331	104.29	103.99	104.82	-1.3482	0.10433	-0.001316	NaN	58.782	27	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56584			4600	13502	3605	3614							0.036083031289990686
DLGPLQPGR	9	Unmodified	_DLGPLQPGR_					0	0	0		ENST00000544158.2_1_19:36259262-36259406:+|nuORF	ENST00000544158.2_1_19:36259262-36259406:+|nuORF	ENST00000544158.2_1_19:36259262-36259406:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	476.764166	951.513779	-0.3724	-0.00017755	-3.2428	-0.0015461	-3.6152	-0.0017236	476.76241522071047	106.37	0.98008	104.35	104	104.98	-2.0161	0.16196	0.00029134	NaN	58.782	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46417			4601	13502	3605	3614							0.036083031289990686
DLGTGRVRILR	11	Unmodified	_DLGTGRVRILR_					0	0	0			REV__ENSG00000198753|ENST00000361971|PLXNB3	REV__ENSG00000198753|ENST00000361971|PLXNB3	MSMS	OvCa9_classI_Rep4_	4	628.3827514648438	2	628.383303	1254.75205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	152.03	1	150.6	150.1	151.1	-1.435								0	0	0	0.19441	1	15035	15035		31.53	2.3598	1		+		4602	23057	3606	3615	5888	5888					0.13486663711250912
DLHKFVVD	8	Unmodified	_DLHKFVVD_					0	0	0			REV__ENST00000460289.5_1_2:120517896-120637673:+|nuORF	REV__ENST00000460289.5_1_2:120517896-120637673:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.289306640625	2	486.761092	971.507631	-1.3382	-0.00065136	1.4118	0.00068721	0.07364	3.5845E-05	486.76173153523	96.434	0.96469	94.605	94.123	95.088	-1.8286					29	18	3	0	0	0	0.028476	1	6292	6292		63.306	0	1	41761	+		4603	17172	3607	3616	5889	5889					0.020737848974818007
DLHLFLPD	8	Unmodified	_DLHLFLPD_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-2|BLTP1;ENST00000495260.5_1_4:123117925-123131067:+|nuORF;nc|ENSG00000138688|Q2LD37-5|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.7415466308594	2	485.255643	968.496732	-0.7329	-0.00035564	-3.3981	-0.0016489	-4.131	-0.0020046	485.25386979120645	70.259	0.92453	66.778	66.49	67.415	-3.4812					37	18	3	0	0	0	0.028476	1	5327	5327		12.959	0	1	136550			4604	4713	3608	3617	5890	5890					0.011223825231695628
DLHLNEPLV	9	Unmodified	_DLHLNEPLV_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-MSMS	OvCa9_classI_Rep3	3	525.2833862304688	2	525.284931	1048.55531	-0.52192	-0.00027415	-0.086001	-4.5175E-05	-0.60792	-0.00031933	525.2848982861796	114.53	2.2405	113.48	112.84	115.08	-1.055					123	44	4	0	0	0	0.44568	1	8459	8459		47.657	3.2801	1	908300	+		4605	21063	3609	3618	5891	5891					0.032974390976505674
DLHLPNNVD	9	Unmodified	_DLHLPNNVD_					0	0	0			REV__nc|ENSG00000130985|P22314-2|UBA1	REV__nc|ENSG00000130985|P22314-2|UBA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.2972412109375	2	518.756538	1035.49852	-1.202	-0.00062352	0.56836	0.00029484	-0.6336	-0.00032869	518.7568564629553	69.778	0.69478	69.778	69.475	70.17	0					32	16	3	0	0	0	0.027447	1	6709	6709		47.657	0	1	1953500	+		4606	18986	3610	3619	5892	5892					-0.017806084588528392
DLHQPKGII	9	Unmodified	_DLHQPKGII_					0	0	0		tr|A0A553SPG7|A0A553SPG7_NIACIAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_26175PE=3SV=1	tr|A0A553SPG7|A0A553SPG7_NIACIAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_26175PE=3SV=1	tr|A0A553SPG7|A0A553SPG7_NIACIAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_26175PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	511.28326416015625	2	510.795466	1019.57638	-0.7839	-0.00040041	-0.85221	-0.00043531	-1.6361	-0.00083572	510.79515736010393	99.358	0.5471	98.528	98.318	98.865	-0.83052					14	10	2	0	0	0	0.027433	1	9088	9088		60.972	26.799	1	19748			4607	34041	3611	3620	5893	5893					0.06737449197191836
DLHQPKRKL	9	Unmodified	_DLHQPKRKL_					0	0	0		nc|ENSG00000111554|Q8TC05-4|MDM1;nc|ENSG00000111554|Q8TC05|MDM1;ENSG00000111554|ENST00000682720|MDM1;ENST00000536997.1_1_12:68715294-68716924:-|nuORF;ENST00000538454.2_1_12:68715078-68716924:-|nuORF	nc|ENSG00000111554|Q8TC05-4|MDM1	nc|ENSG00000111554|Q8TC05-4|MDM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.3297729492188	2	567.840739	1133.66693	1.8345	0.0010417	2.261	0.0012839	4.0955	0.0023256	568.3437593596649	91.315	0.28546	91.315	91.174	91.459	0					12	6	3	0	0	0	0.027462	1	9822	9822		25.574	0	1	192320			4608	2829	3612	3621	5894	5894					0.105439182454802
DLICHLNTLN	10	Unmodified	_DLICHLNTLN_					0	0	0			REV__ENSG00000135040|ENST00000361671|NAA35	REV__ENSG00000135040|ENST00000361671|NAA35	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2867431640625	2	578.294973	1154.57539	-7.6021	-0.0043963	-1.6299	-0.00094256	-9.232	-0.0053388	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.72142	1	13162	13162		28.081	3.5623	1	1429200	+		4609	19249	3613	3622	5895	5895					0.004288667659920975
DLIDLTPRQK	10	Unmodified	_DLIDLTPRQK_					0	0	0		nc|ENSG00000165671|Q96L73-2|NSD1;ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-MSMS	OvCa99_classI_Rep5	1	400.23028564453125	3	400.231189	1197.67174	1.048	0.00041945	-3.2362	-0.0012952	-2.1881	-0.00087576	400.2298274856112	33.558	0.92907	33.558	33.136	34.065	0					35	18	3	0	0	0	0.67987	1	1553	1553		32.751	3.5805	1	231190			4610	6589	3614	3623	5896	5896					0.08080757597531374
DLIENLCHF	9	Unmodified	_DLIENLCHF_					0	0	0			REV__ENST00000561691.5_1_15:43691337-43697409:+|nuORF	REV__ENST00000561691.5_1_15:43691337-43697409:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.3026123046875	2	552.263142	1102.51173	-0.35724	-0.00019729	2.3322	0.001288	1.9749	0.0010907	552.2647887390921	102.31	0.84128	101.63	101.19	102.03	-0.68459					23	16	2	0	0	0	0.027091	1	9383	9383		82.305	0	1	22723	+		4611	19484	3615	3624	5897	5897					-0.035424936711251576
DLIEPGHLNP	10	Unmodified	_DLIEPGHLNP_					0	0	0			REV__ENSG00000115414|ENST00000354785|FN1	REV__ENSG00000115414|ENST00000354785|FN1	MULTI-SECPEP	OvCa9_classI_Rep3	3	552.3032836914062	2	552.787838	1103.56112	-1.0093	-0.00055793	1.1391	0.0006297	0.12983	7.1769E-05	552.7881708831102	102.34	0.88431	100.81	100.48	101.36	-1.5211					22	16	2	0	0	0	0.027632	1	7060	7060		98.629	16.389	1	40218	+		4612	18242	3616	3625	5898	5898					0.013485376093512969
DLIETVRELNL	11	Unmodified	_DLIETVRELNL_					0	0	0			REV__ST3GAL2-COG4|3|fusion	REV__ST3GAL2-COG4|3|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	438.9144592285156	3	438.913637	1313.71908	0.64384	0.00028259	-0.92461	-0.00040582	-0.28076	-0.00012323	438.91314120319157	55.82	0.49259	55.82	55.559	56.052	0					29	11	3	0	0	0	0.4744	1	4602	4602		55.721	2.6321	1	1463500	+		4613	29457	3617	3626	5899	5899					0.07476992077909017
DLIETVRELNL	11	Unmodified	_DLIETVRELNL_					0	0	0			REV__ST3GAL2-COG4|3|fusion	REV__ST3GAL2-COG4|3|fusion	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	438.913637	1313.71908	0.64384	0.00028259	-0.92461	-0.00040582	-0.28076	-0.00012323	438.91314120319157	55.82	0.49259	55.82	55.559	56.052	0	0.11526	-0.00033062	NaN	55.721	29	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1463500	+		4614	29457	3617	3626							0.07476992077909017
DLIETVRELNL	11	Unmodified	_DLIETVRELNL_					0	0	0			REV__ST3GAL2-COG4|3|fusion	REV__ST3GAL2-COG4|3|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		3	438.913637	1313.71908	0.47685	0.0002093	-0.71975	-0.00031591	-0.2429	-0.00010661	438.9134389441852	58.401	0.95946	55.621	55.335	56.294	-2.7801	-0.083743	-6.088E-05	NaN	55.721	41	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68908	+		4615	29457	3617	3626							0.07476992077909017
DLIETVRELNL	11	Unmodified	_DLIETVRELNL_					0	0	0			REV__ST3GAL2-COG4|3|fusion	REV__ST3GAL2-COG4|3|fusion	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	438.913637	1313.71908	0.054595	2.3963E-05	-0.27533	-0.00012085	-0.22074	-9.6884E-05	438.91350937393236	59.065	1.3411	55.673	55.249	56.591	-3.392	-0.031513	0.0005243	NaN	55.721	71	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286630	+		4616	29457	3617	3626							0.07476992077909017
DLIFPSYFV	9	Unmodified	_DLIFPSYFV_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.M3578Ifs*3|1|0.03|ENSG00000048707|chr1:12369624-12369625|-/TATAT|frameshift_variant;ENST00000460333.5_1_1:12359354-12409038:+|nuORF	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3358154296875	2	550.786776	1099.559	1.4155	0.00077964	-3.5178	-0.0019376	-2.1023	-0.0011579	550.7845124653088	130.06	0.71027	130.06	129.63	130.34	0					19	14	2	0	0	0	0.027462	1	15094	15094		24.203	5.8783	1	93815			4617	1159	3618	3627	5900	5900					0.013201088715277365
DLIGGDILTQ	10	Unmodified	_DLIGGDILTQ_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN	REV__ENSG00000152818|ENST00000367545|UTRN	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.3187255859375	2	522.782222	1043.54989	0.36515	0.0001909	-0.9777	-0.00051113	-0.61255	-0.00032023	522.7816181460412	66.906	0.47342	66.906	66.7	67.173	0					18	11	2	0	0	0	0.026674	1	6217	6217		47.96	13.787	1	1442600	+		4618	20306	3619	3628	5901	5901					0.029857155152058112
DLIGGDILTQ	10	Unmodified	_DLIGGDILTQ_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN	REV__ENSG00000152818|ENST00000367545|UTRN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	522.782222	1043.54989	-0.044789	-2.3415E-05	-1.1551	-0.00060388	-1.1999	-0.00062729	522.7816406214039	69.696	0.9979	67.125	66.565	67.563	-2.5707	0.079095	-0.00053188	NaN	46.457	63	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203200	+		4619	20306	3619	3628							0.029857155152058112
DLIITVVSI	9	Unmodified	_DLIITVVSI_					0	0	0			REV__ENSG00000160161|ENST00000291495|CILP2	REV__ENSG00000160161|ENST00000291495|CILP2	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.7903747558594	2	486.802426	971.590298	1.9054	0.00092755	3.6871	0.0017949	5.5925	0.0027224	486.805813724706	89.231	0.34605	87.863	87.725	88.071	-1.3676					8	6	2	0	0	0	0.027462	1	7859	7859		27.882	0	1	6431.8	+		4620	20641	3620	3629	5902	5902					0.10336681905619116
DLIKSDPSGH	10	Unmodified	_DLIKSDPSGH_					0	0	0		nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;ENSG00000128829|ENST00000263791|EIF2AK4;BUB1B-EIF2AK4|1|fusion;EIF2AK4|p.D1266Ifs*9|1|0.12|ENSG00000128829|chr15:40016537-40016537|A/-|frameshift_variant	nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	MULTI-SECPEP	OvCa9_classI_Rep2	2	533.8109130859375	2	534.769645	1067.52474	-1.1494	-0.00061464	4.2185	0.0022559	3.0691	0.0016413	534.7718935445689	95.141	1.6859	94.113	93.775	95.461	-1.0281					57	33	3	0	0	0	0.026679	1	8532	8532		71.877	36.725	1	132740			4621	3906	3621	3630	5903	5903					-0.006323392873810008
DLIKSDPSGH	10	Unmodified	_DLIKSDPSGH_					0	0	0		nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;ENSG00000128829|ENST00000263791|EIF2AK4;BUB1B-EIF2AK4|1|fusion;EIF2AK4|p.D1266Ifs*9|1|0.12|ENSG00000128829|chr15:40016537-40016537|A/-|frameshift_variant	nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	MULTI-SECPEP	OvCa9_classI_Rep3	3	533.8093872070312	2	534.769645	1067.52474	0.021369	1.1428E-05	2.9784	0.0015928	2.9998	0.0016042	534.7712236852434	95.879	1.9674	94.051	93.481	95.448	-1.8286					70	38	3	0	0	0	0.026606	1	6264	6264		62.107	0	1	208880			4622	3906	3621	3630	5904	5904					-0.006323392873810008
DLIKYKGYA	9	Unmodified	_DLIKYKGYA_					0	0	0		tr|A0A7D6VTG6|A0A7D6VTG6_9CLOTUndecaprenyl-diphosphataseOS=ClostridiumintestinaleOX=36845GN=uppPPE=3SV=1	tr|A0A7D6VTG6|A0A7D6VTG6_9CLOTUndecaprenyl-diphosphataseOS=ClostridiumintestinaleOX=36845GN=uppPPE=3SV=1	tr|A0A7D6VTG6|A0A7D6VTG6_9CLOTUndecaprenyl-diphosphataseOS=ClostridiumintestinaleOX=36845GN=uppPPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.2603759765625	2	535.797675	1069.5808	-1.1348	-0.000608	-3.2997	-0.001768	-4.4345	-0.002376	536.2976987837886	87.172	0.34969	84.545	84.399	84.748	-2.6269					9	6	2	0	0	0	0.027462	1	7420	7420		44.117	20.594	1	16218			4623	35113	3622	3631	5905	5905					0.04878913620086678
DLILLEPKT	9	Unmodified	_DLILLEPKT_					0	0	0			REV__tr|A0A7D6VXX0|A0A7D6VXX0_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13605PE=3SV=1	REV__tr|A0A7D6VXX0|A0A7D6VXX0_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13605PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.3173217773438	2	521.313158	1040.61176	-0.53232	-0.00027751	-1.8093	-0.00094322	-2.3416	-0.0012207	521.3121728422434	46.814	0.57762	46.814	46.587	47.165	0					27	12	3	0	0	0	0.027462	1	3307	3307		27.882	0	1	853180	+		4624	31794	3623	3632	5906	5906					0.09308066934318049
DLILVPSVV	9	Unmodified	_DLILVPSVV_					0	0	0			REV__nc|ENSG00000182473|Q9UPT5-2|EXOC7	REV__nc|ENSG00000182473|Q9UPT5-2|EXOC7	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.771728515625	2	477.797143	953.579734	-0.18973	-9.0655E-05	1.6485	0.00078765	1.4588	0.00069699	477.7977607968112	72.925	0.20576	70.525	70.43	70.636	-2.3999					5	3	2	0	0	0	0.027462	1	5910	5910		37.159	5.2042	1	6127.3	+		4625	22296	3624	3633	5907	5907					0.10108699251190956
DLIMTQKKV	9	Unmodified	_DLIMTQKKV_					0	0	0		ENSG00000165591|ENST00000374900|FAAH2	ENSG00000165591|ENST00000374900|FAAH2	ENSG00000165591|ENST00000374900|FAAH2	MULTI-MSMS	OvCa9_classI_Rep2	2	538.3106689453125	2	538.312635	1074.61072	-0.75667	-0.00040733	-3.4315	-0.0018472	-4.1881	-0.0022545	538.3104984778253	106.9	1.3198	106.59	106.32	107.64	-0.30836					69	26	4	0	0	0	0.53483	1	9979	9979		39.253	7.298	1	342170			4626	6578	3625	3634	5908	5908					0.07639529293783198
DLIPNLVET	9	Unmodified	_DLIPNLVET_					0	0	0		tr|A0A7D6ZXU9|A0A7D6ZXU9_9CLOTLemAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23395PE=3SV=1	tr|A0A7D6ZXU9|A0A7D6ZXU9_9CLOTLemAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23395PE=3SV=1	tr|A0A7D6ZXU9|A0A7D6ZXU9_9CLOTLemAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23395PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.725830078125	2	507.279315	1012.54408	1.4584	0.00073983	4.275	0.0021686	5.7334	0.0029084	507.2814598894655	119.08	0.66084	119.08	118.67	119.33	0					21	13	2	0	0	0	0.027462	1	13690	13690		44.117	0	1	670790			4627	35892	3626	3635	5909	5909					0.03830617003529824
DLISALGKL	9	Unmodified	_DLISALGKL_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	MULTI-MSMS	OvCa9_classI_Rep2	2	465.28643798828125	2	465.286943	928.559333	0.40865	0.00019014	-0.89022	-0.00041421	-0.48157	-0.00022407	465.2865075151942	125.02	3.4561	124.79	124.42	127.87	-0.2359					183	69	5	0	0	0	0.18193	1	12287	12287		79.451	0	1	4060300			4628	1687	3627	3636	5910	5910					0.09219528591370363
DLITFQKAL	9	Unmodified	_DLITFQKAL_					0	0	0			REV__nc|ENSG00000172594|Q92484-2|SMPDL3A	REV__nc|ENSG00000172594|Q92484-2|SMPDL3A	MULTI-MSMS	OvCa99_classI_Rep5	1	524.8070068359375	2	524.8055	1047.59645	1.7389	0.00091261	0.57479	0.00030165	2.3137	0.0012143	524.8056112399768	100.17	0.7524	100.17	99.896	100.65	0					37	17	3	0	0	0	0.21231	1	11112	11112		74.255	2.3776	1	3784700	+		4629	21714	3628	3637	5911	5911					0.07455200137133033
DLITRLILL	9	Unmodified	_DLITRLILL_					0	0	0		ENST00000033079.7_2_5:137321001-137323237:-|nuORF	ENST00000033079.7_2_5:137321001-137323237:-|nuORF	ENST00000033079.7_2_5:137321001-137323237:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.3253784179688	2	535.352617	1068.69068	-1.0025	-0.00053668	0.98489	0.00052726	-0.017583	-9.4133E-06	535.3529073853956	121.91	0.67738	120.57	120.25	120.93	-1.3479					29	12	3	0	0	0	0.027462	1	11504	11504		47.657	5.2612	1	53336			4630	9628	3629	3638	5912	5912					0.15908338959297907
DLIVQKAET	9	Unmodified	_DLIVQKAET_					0	0	0			REV__tr|A0A553SUL2|A0A553SUL2_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00770PE=3SV=1	REV__tr|A0A553SUL2|A0A553SUL2_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00770PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.7982177734375	2	508.784764	1015.55498	0.53795	0.0002737	2.4951	0.0012695	3.033	0.0015432	508.7856626101961	101.86	0.80926	101.86	101.48	102.29	0					45	18	4	0	0	0	0.027462	1	11346	11346		26.693	0	1	481490	+		4631	31091	3630	3639	5913	5913					0.04782019377796587
DLIYEVGH	8	Unmodified	_DLIYEVGH_					0	0	0			REV__CHSY3|p.V836Nfs*12|1|0.05|ENSG00000198108|chr5:130185647-130185648|-/AACGGGGGAAATCCTCCCACTGATG|frameshift_variant	REV__CHSY3|p.V836Nfs*12|1|0.05|ENSG00000198108|chr5:130185647-130185648|-/AACGGGGGAAATCCTCCCACTGATG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.2392883300781	2	473.23745	944.460347	0.94512	0.00044727	0.47563	0.00022509	1.4208	0.00067235	473.2377565924544	158.22	0.78159	158.22	157.96	158.74	0					19	16	2	0	0	0	0.028476	1	18541	18541		44.531	11.015	1	22866	+		4632	16144	3631	3640	5914	5914					-0.014104943735105735
DLIYQLNLI	9	Unmodified	_DLIYQLNLI_					0	0	0			REV__tr|A0A553SU48|A0A553SU48_NIACIROKfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_06240PE=4SV=1	REV__tr|A0A553SU48|A0A553SU48_NIACIROKfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_06240PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.3026123046875	2	552.818607	1103.62266	-0.35396	-0.00019567	-0.83827	-0.00046341	-1.1922	-0.00065909	552.8175952244718	102.02	0.94096	101.25	101.01	101.95	-0.76401					40	18	3	0	0	0	0.027164	1	9383	9383		102.77	1.1726	1	37183	+		4633	30673	3632	3641	5915	5915					0.07499469308618245
DLIYQLNLI	9	Unmodified	_DLIYQLNLI_					0	0	0			REV__tr|A0A553SU48|A0A553SU48_NIACIROKfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_06240PE=4SV=1	REV__tr|A0A553SU48|A0A553SU48_NIACIROKfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_06240PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	552.818607	1103.62266	2.273	0.0012565	-0.18282	-0.00010107	2.0901	0.0011555	552.818313784263	101.07	0.87664	101.07	100.73	101.61	0	-0.21371	-3.6199E-06	NaN	102.77	41	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2723600	+		4634	30673	3632	3641							0.07499469308618245
DLKDILHAAKQ	11	Unmodified	_DLKDILHAAKQ_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3;ENST00000468245.2_1_6:101296020-101315873:-|nuORF;nc|ENSG00000112249|Q8N3C0-3|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	OvCa9_classI_Rep2	2	626.3530883789062	2	626.356419	1250.69829	-1.9462	-0.001219	1.5082	0.00094465	-0.43806	-0.00027438	626.3573443500079	51.108	1.6856	48.314	48.024	49.71	-2.794					77	33	4	0	0	0	0.67389	1	3349	3349		35.178	3.544	1	363860			4635	2891	3633	3642	5916	5916					0.08296446488884612
DLKDIWLL	8	Unmodified	_DLKDIWLL_					0	0	0		tr|A0A553SU85|A0A553SU85_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_06535PE=3SV=1	tr|A0A553SU85|A0A553SU85_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_06535PE=3SV=1	tr|A0A553SU85|A0A553SU85_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_06535PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.29132080078125	2	508.294768	1014.57498	-0.45487	-0.00023121	-3.9933	-0.0020298	-4.4482	-0.002261	508.2925640256571	116.78	1.6739	115.41	115.09	116.77	-1.3645					67	31	4	0	0	0	0.65062	1	10923	10923		53.351	3.3269	1	313250			4636	34581	3634	3643	5917	5917					0.06827815108431423
DLKDLKGYS	9	Unmodified	_DLKDLKGYS_					0	0	0		ENSG00000134253|ENST00000256649|TRIM45;nc|ENSG00000134253|Q9H8W5-2|TRIM45;TRIM45|p.E318Dfs*55|1|0.07|ENSG00000134253|chr1:117118302-117118303|-/CCACTGCCCTCTCAATGTCAATGGGAAA|frameshift_variant	ENSG00000134253|ENST00000256649|TRIM45	ENSG00000134253|ENST00000256649|TRIM45	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.30322265625	2	519.776939	1037.53933	0.94323	0.00049027	0.79666	0.00041409	1.7399	0.00090435	519.7758203302138	43.089	0.64383	40.379	40.114	40.758	-2.7097					16	12	2	0	0	0	0.027438	1	2399	2399		47.96	10.148	1	10399			4637	4271	3635	3644	5918	5918					0.022057328607616
DLKGKGGH	8	Unmodified	_DLKGKGGH_					0	0	0		tr|A0A553SPE9|A0A553SPE9_NIACIN-acetyldiaminopimelatedeacetylaseOS=NialliacirculansOX=1397GN=CEQ21_26260PE=3SV=1	tr|A0A553SPE9|A0A553SPE9_NIACIN-acetyldiaminopimelatedeacetylaseOS=NialliacirculansOX=1397GN=CEQ21_26260PE=3SV=1	tr|A0A553SPE9|A0A553SPE9_NIACIN-acetyldiaminopimelatedeacetylaseOS=NialliacirculansOX=1397GN=CEQ21_26260PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	405.553466796875	2	406.224677	810.434801	1.5879	0.00064505	0.14669	5.9589E-05	1.7346	0.00070464	406.22484110366133	47.799	1.0608	44.691	44.287	45.348	-3.1077					32	20	2	0	0	0	0.028476	1	2606	2606		25.45	1.2474	1	60355			4638	34036	3636	3645	5919	5919					0.022000758947115173
DLKGTLPLHL	10	Unmodified	_DLKGTLPLHL_					0	0	0			REV__ENST00000367577.6_2_1:181059300-181059528:+|nuORF	REV__ENST00000367577.6_2_1:181059300-181059528:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8299560546875	2	553.832049	1105.64954	0.13277	7.3535E-05	-3.4573	-0.0019148	-3.3245	-0.0018412	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.66721	1	13919	13919		34.173	2.2177	1	400120	+		4639	24902	3637	3646	5920	5920					0.10094577919812764
DLKIRPDIVV	10	Unmodified	_DLKIRPDIVV_					0	0	0			REV__tr|A0A7D6VMD2|A0A7D6VMD2_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14905PE=3SV=1	REV__tr|A0A7D6VMD2|A0A7D6VMD2_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14905PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3565673828125	2	584.358431	1166.70231	-2.312	-0.0013511	-1.149	-0.00067141	-3.461	-0.0020225	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.74374	1	14591	14591		25.574	0	1	180810	+		4640	31131	3638	3647	5921	5921					0.12562535982578993
DLKKETII	8	Unmodified	_DLKKETII_					0	0	0			REV__tr|A0A7D6VMB6|A0A7D6VMB6_9CLOTUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=ClostridiumintestinaleOX=36845GN=murEPE=3SV=1	REV__tr|A0A7D6VMB6|A0A7D6VMB6_9CLOTUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=ClostridiumintestinaleOX=36845GN=murEPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.2990417480469	2	480.292225	958.569897	-0.37277	-0.00017904	-0.072949	-3.5037E-05	-0.44572	-0.00021407	480.29189839783027	99.044	1.1877	96.719	96.33	97.518	-2.3253					36	22	2	0	0	0	0.028476	1	8910	8910		35.618	0	1	24278	+		4641	31129	3639	3648	5922	5922					0.08895511245816579
DLKKETII	8	Unmodified	_DLKKETII_					0	0	0			REV__tr|A0A7D6VMB6|A0A7D6VMB6_9CLOTUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=ClostridiumintestinaleOX=36845GN=murEPE=3SV=1	REV__tr|A0A7D6VMB6|A0A7D6VMB6_9CLOTUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=ClostridiumintestinaleOX=36845GN=murEPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.2990417480469	2	480.292225	958.569897	-1.0423	-0.00050063	0.52525	0.00025227	-0.51709	-0.00024835	480.29226081826977	100.07	1.2201	97.745	97.468	98.688	-2.3253					51	23	3	0	0	0	0.028476	1	8910	8910		35.618	1.4457	1	176980	+		4642	31129	3639	3648	5923	5923					0.08895511245816579
DLKKETII	8	Unmodified	_DLKKETII_					0	0	0			REV__tr|A0A7D6VMB6|A0A7D6VMB6_9CLOTUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=ClostridiumintestinaleOX=36845GN=murEPE=3SV=1	REV__tr|A0A7D6VMB6|A0A7D6VMB6_9CLOTUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=ClostridiumintestinaleOX=36845GN=murEPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	480.292225	958.569897	-0.70388	-0.00033807	0.31124	0.00014949	-0.39264	-0.00018858	480.29219445496847	98.643	1.393	97.75	97.41	98.803	-0.89306	0.0073821	7.7087E-05	NaN	35.618	54	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115970	+		4643	31129	3639	3648							0.08895511245816579
DLKKETII	8	Unmodified	_DLKKETII_					0	0	0			REV__tr|A0A7D6VMB6|A0A7D6VMB6_9CLOTUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=ClostridiumintestinaleOX=36845GN=murEPE=3SV=1	REV__tr|A0A7D6VMB6|A0A7D6VMB6_9CLOTUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=ClostridiumintestinaleOX=36845GN=murEPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	480.292225	958.569897	-0.071359	-3.4273E-05	-0.089163	-4.2824E-05	-0.16052	-7.7097E-05	480.2919123986332	99.418	1.0278	97.733	97.27	98.297	-1.685	-0.0097108	-0.00030753	NaN	35.618	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119920	+		4644	31129	3639	3648							0.08895511245816579
DLKKKLKVTFV	11	Unmodified	_DLKKKLKVTFV_					0	0	0		ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	MULTI-MSMS	OvCa9_classI_Rep3	3	440.2896423339844	3	440.286746	1317.83841	1.9822	0.00087273	4.1884	0.0018441	6.1706	0.0027168	440.28853407751586	61.967	0.75494	58.899	58.622	59.377	-3.0685					35	19	2	0	0	0	0.72542	1	2208	2208		10.104	2.2994	1	31475			4645	6553	3640	3649	5924	5924					0.19220230493260715
DLKKLEFALG	10	Unmodified	_DLKKLEFALG_					0	0	0		nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-3|CIITA	nc|ENSG00000179583|P33076|CIITA	nc|ENSG00000179583|P33076|CIITA	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3294677734375	2	567.331882	1132.64921	-3.474	-0.0019709	-0.21845	-0.00012393	-3.6925	-0.0020949	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.74374	1	12173	12173		25.574	1.0549	1	458690			4646	7832	3641	3650	5925	5925					0.08819158199935373
DLKKVMKN	8	Unmodified	_DLKKVMKN_					0	0	0		nc|ENSG00000105176|O94763-2|URI1;nc|ENSG00000105176|O94763-4|URI1;nc|ENSG00000105176|O94763-3|URI1;ENSG00000105176|ENST00000392271|URI1	nc|ENSG00000105176|O94763-2|URI1	nc|ENSG00000105176|O94763-2|URI1	MULTI-MSMS	OvCa9_classI_Rep2	2	488.28326416015625	2	488.28642	974.558287	-0.60534	-0.00029558	-3.8665	-0.0018879	-4.4718	-0.0021835	488.2844519822403	100.12	1.1905	99.289	98.964	100.15	-0.83051					71	23	4	0	0	0	0.71369	1	9160	9160		40.573	1.7665	1	404010			4647	2425	3642	3651	5926	5926					0.0699899095083083
DLKKVNTKP	9	Unmodified	_DLKKVNTKP_					0	0	0			REV__nc|ENSG00000100852|Q13017-2|ARHGAP5	REV__nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-MSMS	OvCa9_classI_Rep2	2	521.8155517578125	2	521.816399	1041.61824	0.79827	0.00041655	-3.2909	-0.0017172	-2.4926	-0.0013007	521.8145751675044	30.789	0.8863	28.08	27.903	28.789	-2.7097					32	17	3	0	0	0	0.69403	1	887	887		19.997	1.6724	1	123530	+		4648	17455	3643	3652	5927	5927					0.09910004885728085
DLKLENGKVH	10	Unmodified	_DLKLENGKVH_					0	0	0		tr|A0A7D7A214|A0A7D7A214_9CLOTClassISAM-dependentRNAmethyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14610PE=4SV=1	tr|A0A7D7A214|A0A7D7A214_9CLOTClassISAM-dependentRNAmethyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14610PE=4SV=1	tr|A0A7D7A214|A0A7D7A214_9CLOTClassISAM-dependentRNAmethyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14610PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.3082885742188	2	576.822212	1151.62987	-0.51899	-0.00029937	0.05784	3.3363E-05	-0.46115	-0.000266	576.8221340467755	47.504	0.73315	47.504	47.121	47.854	0					31	16	3	0	0	0	0.026826	1	3419	3419		36.447	0	1	722880			4649	36058	3644	3653	5928	5928					0.06012201909038595
DLKLLVEKK	9	Unmodified	_DLKLLVEKK_					0	0	0		NSMCE2-PBX3|1|fusion;ENSG00000156831|ENST00000287437|NSMCE2	NSMCE2-PBX3|1|fusion	NSMCE2-PBX3|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7965698242188	2	543.350074	1084.6856	2.1885	0.0011891	-0.8567	-0.00046549	1.3318	0.00072362	543.3502256742172	107.44	0.96555	107.44	107.06	108.03	0					29	22	3	0	0	0	0.027462	1	12148	12148		45.972	8.1607	1	510870			4650	15441	3645	3654	5929	5929					0.14664035096643602
DLKLNTPT	8	Unmodified	_DLKLNTPT_					0	0	0		ENST00000464589.1_1_21:28210274-28210313:-|nuORF	ENST00000464589.1_1_21:28210274-28210313:-|nuORF	ENST00000464589.1_1_21:28210274-28210313:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	450.2680358886719	2	451.2531	900.491647	2.7134	0.0012244	-2.1932	-0.0009897	0.52014	0.00023471	451.2520528679327	70.965	0.9967	68.394	68.114	69.111	-2.5707					25	18	3	0	0	0	0.028476	1	5740	5740		51.335	3.4199	1	26314			4651	12256	3646	3655	5930	5930					0.03742078660570769
DLKLNTPT	8	Unmodified	_DLKLNTPT_					0	0	0		ENST00000464589.1_1_21:28210274-28210313:-|nuORF	ENST00000464589.1_1_21:28210274-28210313:-|nuORF	ENST00000464589.1_1_21:28210274-28210313:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	451.2531	900.491647	-0.27328	-0.00012332	0.79177	0.00035729	0.51848	0.00023397	451.25338575290544	68.254	0.61214	68.254	68.037	68.649	0	-0.10583	0.00086971	NaN	51.335	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	559310			4652	12256	3646	3655							0.03742078660570769
DLKMQQRI	8	Unmodified	_DLKMQQRI_					0	0	0		ENST00000550412.5_2_12:56117861-56118326:+|nuORF	ENST00000550412.5_2_12:56117861-56118326:+|nuORF	ENST00000550412.5_2_12:56117861-56118326:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.7974853515625	2	516.286951	1030.55935	-0.25382	-0.00013104	-3.169	-0.0016361	-3.4228	-0.0017671	516.2847369149343	71.67	0.40826	71.67	71.427	71.835	0					15	9	3	0	0	0	0.028476	1	6924	6924		94.006	8.6469	1	2911400			4653	13587	3647	3656	5931	5931					0.04529205319749963
DLKNIVLTT	9	Unmodified	_DLKNIVLTT_					0	0	0		ENSG00000143512|ENST00000343410|HHIPL2	ENSG00000143512|ENST00000343410|HHIPL2	ENSG00000143512|ENST00000343410|HHIPL2	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.81341552734375	2	508.802957	1015.59136	-0.83914	-0.00042696	2.2533	0.0011465	1.4142	0.00071955	508.8038450163025	57.335	1.342	54.543	53.981	55.323	-2.792					47	26	2	0	0	0	0.027462	1	4107	4107		31.53	11.048	1	34764			4654	5065	3648	3657	5932	5932					0.08418896274497456
DLKPGNILL	9	Unmodified	_DLKPGNILL_					0	0	0		nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2;ENST00000530992.1_1_17:32364642-32365872:-|nuORF;nc|ENSG00000198586|Q9UKI8-3|TLK1;nc|ENSG00000198586|Q9UKI8-4|TLK1;nc|ENSG00000198586|Q9UKI8-5|TLK1;ENSG00000198586|ENST00000431350|TLK1;nc|ENSG00000198586|Q9UKI8-2|TLK1;ENSG00000170209|ENST00000303941|ANKK1;ENST00000414066.1_1_10:38107898-38108846:-|nuORF	nc|ENSG00000146872|Q86UE8-3|TLK2;ENST00000414066.1_1_10:38107898-38108846:-|nuORF	nc|ENSG00000146872|Q86UE8-3|TLK2	MULTI-MSMS	OvCa9_classI_Rep2	2	491.80084228515625	2	491.800217	981.585882	0.45767	0.00022508	-0.86132	-0.0004236	-0.40365	-0.00019852	491.7997614216502	106.26	3.1068	105.82	105.5	108.61	-0.43642					130	62	3	0	0	0	0.22961	1	9909	9909		71.296	0	1	1827600			4655	5315;11571	3649	3658	5933	5933					0.09435217482723601
DLKRGLKIQAA	11	Unmodified	_DLKRGLKIQAA_					0	0	0		ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	MULTI-MSMS	OvCa99_classI_Rep5	1	404.9183044433594	3	404.918945	1211.73501	1.1233	0.00045484	-2.9727	-0.0012037	-1.8494	-0.00074885	404.91758311182286	22.771	0.41687	22.771	22.574	22.991	0					25	9	3	0	0	0	0.72511	1	261	261		14.086	0.57807	1	101790			4656	4102	3650	3659	5934	5934					0.13760743105490292
DLKRPKPEGKL	11	Unmodified	_DLKRPKPEGKL_					0	0	0			REV__ENSG00000179240|ENST00000529331|GVQW3	REV__ENSG00000179240|ENST00000529331|GVQW3	MULTI-MSMS	OvCa9_classI_Rep3	3	640.8914184570312	2	640.887887	1279.76122	-0.17161	-0.00010998	3.4108	0.002186	3.2392	0.002076	640.8899625944715	132.12	1.093	131	130.64	131.73	-1.1249					68	21	4	0	0	0	0.68399	1	10544	10544		35.152	0.97948	1	271940	+		4657	22111	3651	3660	5935	5935					0.13253012276936715
DLKSKGKSIN	10	Unmodified	_DLKSKGKSIN_					0	0	0		ENSG00000180113|ENST00000316081|TDRD6;nc|ENSG00000180113|O60522-2|TDRD6	ENSG00000180113|ENST00000316081|TDRD6	ENSG00000180113|ENST00000316081|TDRD6	MULTI-MSMS	OvCa9_classI_Rep2	2	545.31640625	2	545.316763	1088.61897	-1.7047	-0.0009296	1.3026	0.00071033	-0.40209	-0.00021926	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.73938	1	14280	14280		26.063	6.0666	1	202430			4658	7857	3652	3661	5936	5936					0.07820799534783873
DLKTLVIGSV	10	Unmodified	_DLKTLVIGSV_					0	0	0			REV__tr|A0A553SP27|A0A553SP27_NIACISignalrecognitionparticlereceptorFtsYOS=NialliacirculansOX=1397GN=ftsYPE=3SV=1	REV__tr|A0A553SP27|A0A553SP27_NIACISignalrecognitionparticlereceptorFtsYOS=NialliacirculansOX=1397GN=ftsYPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	522.8171997070312	2	522.818607	1043.62266	-0.597	-0.00031212	-3.2899	-0.00172	-3.8868	-0.0020321	522.8167601392275	30.261	0.7454	30.261	29.986	30.731	0					28	14	4	0	0	0	0.69073	1	1153	1153		31.53	2.3803	1	350320	+		4659	30480	3653	3662	5937	5937					0.10259469308630287
DLKTRQRRIPG	11	Unmodified	_DLKTRQRRIPG_					0	0	0		ENST00000584574.5_3_17:61904600-61904903:-|nuORF	ENST00000584574.5_3_17:61904600-61904903:-|nuORF	ENST00000584574.5_3_17:61904600-61904903:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	447.2715759277344	3	447.268748	1338.78442	0.49635	0.000222	2.3143	0.0010351	2.8107	0.0012571	447.26969346778054	71.556	0.60572	71.556	71.23	71.835	0					31	14	3	0	0	0	0.51772	1	6932	6932		52.167	5.2122	1	1520700			4660	14019	3654	3663	5938	5938					0.12857451114246032
DLLAASLT	8	Unmodified	_DLLAASLT_					0	0	0		ENSG00000134398|ENST00000256797|ERN2	ENSG00000134398|ENST00000256797|ERN2	ENSG00000134398|ENST00000256797|ERN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.2506103515625	2	402.229094	802.443634	0.83454	0.00033568	0.6582	0.00026475	1.4927	0.00060042	402.2308079949387	33.771	0.38947	33.771	33.483	33.873	0					13	7	3	0	0	0	0.028476	1	1580	1580		60.294	7.9948	1	29909			4661	4294	3655	3664	5939	5939					0.03451004740509234
DLLAPLLVIL	10	Unmodified	_DLLAPLLVIL_					0	0	0		ENST00000473458.5_1_22:25240737-25320238:+|nuORF;ENSG00000167037|ENST00000400358|SGSM1;ENST00000480523.1_1_22:25240737-25320238:+|nuORF;nc|ENSG00000167037|Q2NKQ1|SGSM1;nc|ENSG00000167037|Q2NKQ1-3|SGSM1	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	ENST00000473458.5_1_22:25240737-25320238:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.2724609375	2	540.357368	1078.70018	-0.78012	-0.00042154	-2.0989	-0.0011342	-2.879	-0.0015557	540.356138592844	90.705	1.128	88.13	87.801	88.929	-2.575					45	21	3	0	0	0	0.027228	1	7791	7791		10.866	3.6722	1	98661			4662	6748	3656	3665	5940	5940					0.16398107244822313
DLLAVELCTI	10	Unmodified	_DLLAVELCTI_					0	0	0			REV__L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|199|1|anti-sense	REV__L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|199|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.8236083984375	2	545.29665	1088.57875	0.91522	0.00049906	0.079304	4.3244E-05	0.99452	0.00054231	545.7960268334546	85.567	0.28719	82.921	82.755	83.042	-2.6463					6	5	2	0	0	0	0.026849	1	7219	7219		13.454	0	1	11689	+		4663	28567	3657	3666	5941	5941					0.038001168199798485
DLLDSFKKAI	10	Unmodified	_DLLDSFKKAI_					0	0	0		tr|A0A7D6VSY9|A0A7D6VSY9_9CLOTDNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18580PE=4SV=1	tr|A0A7D6VSY9|A0A7D6VSY9_9CLOTDNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18580PE=4SV=1	tr|A0A7D6VSY9|A0A7D6VSY9_9CLOTDNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18580PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.2994384765625	2	575.329339	1148.64412	-0.94789	-0.00054535	-3.3601	-0.0019332	-4.308	-0.0024785	575.3277426699758	98.408	0.15443	96.649	96.572	96.726	-1.7595					4	2	2	0	0	0	0.026734	1	6581	6581		31.53	5.4664	1	7379.4			4664	35068	3658	3667	5942	5942					0.0757485433734928
DLLEDMFSLF	10	Unmodified	_DLLEDMFSLF_					0	0	0		ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	MULTI-SECPEP	OvCa9_classI_Rep3	3	615.313232421875	2	615.291565	1228.56858	2.4034	0.0014788	-1.3244	-0.00081488	1.0791	0.00066394	615.2918164032116	127.27	0.25558	126.2	126.07	126.33	-1.0715					6	4	2	0	0	0	0.026688	1	9955	9955		32.812	0	1	7751.8			4665	5679	3659	3668	5943	5943					-0.03656490905245846
DLLELLPLL	9	Unmodified	_DLLELLPLL_					0	0	0		tr|A0A553SM22|A0A553SM22_NIACIHADfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_21740PE=3SV=1	tr|A0A553SM22|A0A553SM22_NIACIHADfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_21740PE=3SV=1	tr|A0A553SM22|A0A553SM22_NIACIHADfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_21740PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.7665405273438	2	519.825901	1037.63725	-0.61317	-0.00031874	-0.80045	-0.00041609	-1.4136	-0.00073483	519.825505574186	76.972	0.52407	74.601	74.191	74.715	-2.3715					20	9	4	0	0	0	0.027433	1	3987	3987		57.811	9.8957	1	222390			4666	33786	3660	3669	5944	5944					0.11993541456763523
DLLESVDYMV	10	Unmodified	_DLLESVDYMV_					0	0	0		nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-MSMS	OvCa99_classI_Rep5	1	592.2858276367188	2	592.281197	1182.54784	0.25274	0.00014969	3.0516	0.0018074	3.3043	0.0019571	592.2829728243827	58.177	0.95249	58.177	57.899	58.852	0					60	22	4	0	0	0	0.52321	1	4951	4951		51.335	1.7994	1	8378400			4667	3916	3661	3670	5945	5945					-0.03613081284947839
DLLGAFQPGR	10	Unmodified	_DLLGAFQPGR_					0	0	0		ENSG00000130775|ENST00000373921|THEMIS2	ENSG00000130775|ENST00000373921|THEMIS2	ENSG00000130775|ENST00000373921|THEMIS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3126831054688	2	537.290548	1072.56654	2.1001	0.0011284	4.3328	0.002328	6.4329	0.0034563	537.2923559919617	85.073	0.83034	85.073	84.55	85.38	0					28	19	2	0	0	0	0.026782	1	8890	8890		30.318	0	1	3843300			4668	4014	3662	3671	5946	5946					0.033162611917987306
DLLGEFQSAL	10	Unmodified	_DLLGEFQSAL_					0	0	0		ENST00000496538.1_1_1:156693891-156697171:-|nuORF;ISG20L2|p.M301Vfs*35|1|0.07|ENSG00000143319|chr1:156724195-156724196|TG/-|frameshift_variant;ENSG00000143319|ENST00000368219|ISG20L2	ENST00000496538.1_1_1:156693891-156697171:-|nuORF	ENST00000496538.1_1_1:156693891-156697171:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	546.8125	2	546.782222	1091.54989	-0.65177	-0.00035638	2.0688	0.0011312	1.417	0.00077479	547.2853494364555	78.717	0.44462	76.364	76.2	76.645	-2.3527					18	8	3	0	0	0	0.026849	1	4233	4233		40.778	1.5253	1	17844			4669	5032	3663	3672	5947	5947					0.007777155151870829
DLLGSHVLVLQ	11	Unmodified	_DLLGSHVLVLQ_					0	0	0		ENSG00000130035|ENST00000252318|GALNT8	ENSG00000130035|ENST00000252318|GALNT8	ENSG00000130035|ENST00000252318|GALNT8	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.8331298828125	2	597.348063	1192.68157	2.8104	0.0016788	-0.86693	-0.00051786	1.9435	0.0011609	597.3474369962352	89.305	0.39729	89.305	89.119	89.516	0					19	9	3	0	0	0	0.025528	1	9521	9521		28.081	0	1	991560			4670	3953	3664	3673	5948	5948					0.09293945602939857
DLLHESIRS	9	Unmodified	_DLLHESIRS_					0	0	0			REV__nc|ENSG00000110274|Q9UPV0-2|CEP164	REV__nc|ENSG00000110274|Q9UPV0-2|CEP164	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.8137817382812	2	535.285463	1068.55637	-0.13718	-7.343E-05	1.2286	0.00065764	1.0914	0.00058421	535.786995661588	96.605	0.89961	94.179	93.862	94.761	-2.4256					28	17	2	0	0	0	0.027462	1	8566	8566		26.693	0	1	64859	+		4671	17977	3665	3674	5949	5949					0.024836534665837462
DLLHGAGILL	10	Unmodified	_DLLHGAGILL_					0	0	0		ENST00000437621.6_1_7:1626575-1627631:+|nuORF	ENST00000437621.6_1_7:1626575-1627631:+|nuORF	ENST00000437621.6_1_7:1626575-1627631:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.2887878417969	2	511.305667	1020.59678	-0.27068	-0.0001384	-3.6757	-0.0018794	-3.9463	-0.0020178	511.3031781379183	96.313	0.45767	93.887	93.609	94.067	-2.4256					13	8	2	0	0	0	0.026802	1	8516	8516		34.173	0	1	25513			4672	11887	3666	3675	5950	5950					0.08730619856999056
DLLHVFLTT	9	Unmodified	_DLLHVFLTT_					0	0	0			REV__ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	REV__ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.763916015625	2	529.797675	1057.5808	0.57621	0.00030527	1.1599	0.00061451	1.7361	0.00091978	529.7981091976907	141.24	0.7552	141.24	140.83	141.59	0					23	10	3	0	0	0	0.027462	1	16520	16520		30.504	3.7075	1	87538	+		4673	15573	3667	3676	5951	5951					0.05430913620079991
DLLHYSPTVL	10	Unmodified	_DLLHYSPTVL_					0	0	0		nc|ENSG00000173662|Q7RTX1-3|TAS1R1;ENSG00000173662|ENST00000333172|TAS1R1;nc|ENSG00000173662|Q7RTX1-4|TAS1R1;nc|ENSG00000173662|Q7RTX1-2|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	MULTI-MSMS	OvCa99_classI_Rep5	1	579.3129272460938	2	579.313689	1156.61282	3.0753	0.0017816	-4.2899	-0.0024852	-1.2145	-0.00070359	579.3110749799329	97.689	0.9416	97.689	97.18	98.121	0					58	21	4	0	0	0	0.53885	1	10726	10726		49.442	6.5773	1	3232600			4674	7403	3668	3677	5952	5952					0.040782813032365084
DLLKESVIT	9	Unmodified	_DLLKESVIT_					0	0	0			REV__ENST00000568189.5_1_2:111003217-111043255:+|nuORF	REV__ENST00000568189.5_1_2:111003217-111043255:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	509.2926940917969	2	509.294965	1016.57538	1.315	0.00066975	-4.005	-0.0020397	-2.69	-0.00137	509.2927862417461	29.04	0.88334	26.331	26.18	27.063	-2.7097					31	18	3	0	0	0	0.62352	1	669	669		29.15	2.4566	1	75325	+		4675	27712	3669	3678	5953	5953					0.06775190037603807
DLLLISHLLV	10	Unmodified	_DLLLISHLLV_					0	0	0			REV__tr|A0A553SS46|A0A553SS46_NIACIZn-dependenthydrolaseOS=NialliacirculansOX=1397GN=CEQ21_02325PE=3SV=1	REV__tr|A0A553SS46|A0A553SS46_NIACIZn-dependenthydrolaseOS=NialliacirculansOX=1397GN=CEQ21_02325PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2986450195312	2	568.357899	1134.70125	-0.43378	-0.00024654	-2.5075	-0.0014251	-2.9413	-0.0016717	568.3563936206529	39.442	0.2594	39.442	39.287	39.547	0					7	5	2	0	0	0	0.027021	1	2300	2300		21.96	11.094	1	65555	+		4676	30803	3670	3679	5954	5954					0.1392832161370734
DLLLIVAMGG	10	Unmodified	_DLLLIVAMGG_					0	0	0		nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2	nc|ENSG00000164889|P04920-2|SLC4A2	nc|ENSG00000164889|P04920-2|SLC4A2	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.29022216796875	2	501.288628	1000.5627	1.3674	0.00068548	2.2705	0.0011382	3.6379	0.0018236	501.2895121117765	137.98	2.3901	136.45	135.78	138.17	-1.5284					99	50	3	0	0	0	0.62668	1	13410	13410		38.806	13.356	1	64432			4677	6495	3671	3680	5955	5955					0.06244455373746405
DLLLKRQEVRR	11	Unmodified	_DLLLKRQEVRR_					0	0	0			REV__nc|ENSG00000160145|O60229|KALRN	REV__nc|ENSG00000160145|O60229|KALRN	MULTI-MSMS	OvCa9_classI_Rep2	2	475.9611511230469	3	475.959803	1424.85758	-0.45243	-0.00021534	2.8118	0.0013383	2.3593	0.0011229	475.961148400905	105.53	2.2396	105.1	104.7	106.94	-0.43642					127	44	4	0	0	0	0.70315	1	9811	9811		28.577	0	1	485280	+		4678	20640	3672	3681	5956	5956					0.1621457983687833
DLLLPVPK	8	Unmodified	_DLLLPVPK_					0	0	0		SLC16A10|p.F240Sfs*51|1|0.05|ENSG00000112394|chr6:111177440-111177440|C/-|frameshift_variant	REV__ENST00000473872.5_1_1:1328774-1333626:-|nuORF	REV__ENST00000473872.5_1_1:1328774-1333626:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	447.24102783203125	2	447.786579	893.558604	0.16287	7.2929E-05	-3.5208	-0.0015766	-3.3579	-0.0015036	447.7848798528931	55.51	0.40799	55.51	55.315	55.723	0					14	9	2	0	0	0	0.028476	1	4552	4552		31.955	3.7006	1	421180			4679	15756	3673	3682	5957	5957					0.1075673394233263
DLLLQNKVD	9	Unmodified	_DLLLQNKVD_					0	0	0		tr|A0A553SRN6|A0A553SRN6_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_01490PE=3SV=1	tr|A0A553SRN6|A0A553SRN6_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_01490PE=3SV=1	tr|A0A553SRN6|A0A553SRN6_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_01490PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.29833984375	2	529.298039	1056.58152	0.016215	8.5826E-06	-0.47599	-0.00025194	-0.45978	-0.00024336	529.2976255669407	140.62	1.5493	139.13	138.65	140.2	-1.4952					64	29	3	0	0	0	0.59259	1	13730	13730		32.812	3.6629	1	125420			4680	34282	3674	3683	5958	5958					0.055497082691545074
DLLLWALLL	9	Unmodified	_DLLLWALLL_					0	0	0		nc|ENSG00000130529|Q8TD43-2|TRPM4;nc|ENSG00000130529|Q8TD43-3|TRPM4;ENSG00000130529|ENST00000252826|TRPM4;ENST00000596338.5_1_19:49685858-49692185:+|nuORF	nc|ENSG00000130529|Q8TD43-2|TRPM4	nc|ENSG00000130529|Q8TD43-2|TRPM4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.3093872070312	2	535.336436	1068.65832	-0.4382	-0.00023458	-4.0273	-0.002156	-4.4655	-0.0023905	535.3340967458948	111.49	1.0006	109.97	109.53	110.53	-1.5111					30	18	2	0	0	0	0.027462	1	10277	10277		33.516	0	1	56528			4681	3992	3675	3684	5959	5959					0.12673551556281382
DLLNHLVFV	9	Unmodified	_DLLNHLVFV_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;KIAA1109-FSIP2|1|fusion	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.3076171875	2	535.305667	1068.59678	-0.46453	-0.00024867	-1.6213	-0.00086791	-2.0859	-0.0011166	535.3050142681042	111.57	1.1059	110.06	109.68	110.79	-1.5111					53	20	3	0	0	0	0.46377	1	10288	10288		45.952	1.8352	1	91956			4682	4713	3676	3685	5960	5960					0.06522619856991696
DLLPFLSST	9	Unmodified	_DLLPFLSST_					0	0	0		ENSG00000160202|ENST00000291554|CRYAA	ENSG00000160202|ENST00000291554|CRYAA	ENSG00000160202|ENST00000291554|CRYAA	MULTI-SECPEP	OvCa9_classI_Rep2	2	495.8023376464844	2	496.768583	991.522613	-0.13207	-6.561E-05	-2.6365	-0.0013097	-2.7686	-0.0013753	496.76713839287663	114.77	1.2337	114.66	114.26	115.49	-0.11777					38	24	3	0	0	0	0.027462	1	10993	10993		37.159	5.2042	1	31493			4683	6045	3677	3686	5961	5961					0.02651231974800794
DLLPRIAF	8	Unmodified	_DLLPRIAF_					0	0	0		ENST00000302516.9_1_16:70607775-70608060:+|nuORF	ENST00000302516.9_1_16:70607775-70608060:+|nuORF	ENST00000302516.9_1_16:70607775-70608060:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.24749755859375	2	472.781828	943.549102	-0.54087	-0.00025571	-2.7077	-0.0012802	-3.2486	-0.0015359	472.7798132702863	44.478	0.17794	44.478	44.35	44.528	0					5	3	2	0	0	0	0.028476	1	3006	3006		25.45	0	1	41771			4684	10201	3678	3687	5962	5962					0.07506965656784814
DLLQKHTL	8	Unmodified	_DLLQKHTL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.7416687011719	2	484.282192	966.549831	0.23794	0.00011523	1.0503	0.00050864	1.2882	0.00062387	484.28313559896355	57.861	0.25143	57.861	57.732	57.984	0					10	5	2	0	0	0	0.028476	1	4871	4871		21.96	0	1	101640			4685	3083	3679	3688	5963	5963					0.06521760305861335
DLLQKHTL	8	Unmodified	_DLLQKHTL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.7415466308594	2	484.282192	966.549831	-0.75127	-0.00036383	0.068763	3.3301E-05	-0.6825	-0.00033052	484.28235437448257	69.429	1.3686	65.948	65.713	67.081	-3.4812					33	27	2	0	0	0	0.028476	1	5327	5327		37.159	7.3176	1	79638			4686	3083	3679	3688	5964	5964					0.06521760305861335
DLLQKHTL	8	Unmodified	_DLLQKHTL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	484.282192	966.549831	-1.1556	-0.00055962	0.66501	0.00032205	-0.49055	-0.00023756	484.28263665315046	68.359	1.191	65.739	65.474	66.665	-2.6203	-0.10452	0.000232	NaN	51.335	31	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70432			4687	3083	3679	3688							0.06521760305861335
DLLQKLEEP	9	Unmodified	_DLLQKLEEP_					0	0	0			REV__CSAD|p.M368Cfs*28|1|0.11|ENSG00000139631|chr12:53160185-53160185|G/-|frameshift_variant	REV__CSAD|p.M368Cfs*28|1|0.11|ENSG00000139631|chr12:53160185-53160185|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.326416015625	2	542.797872	1083.58119	-1.5201	-0.00082511	2.8393	0.0015412	1.3192	0.00071607	542.7989970435111	66.205	0.87663	62.715	62.467	63.344	-3.4902					45	17	3	0	0	0	0.027462	1	4779	4779		17.365	0	1	120570	+		4688	16241	3680	3689	5965	5965					0.042742885492771165
DLLQTIIQT	9	Unmodified	_DLLQTIIQT_					0	0	0		HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|169|3|sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|169|3|sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|169|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.3187255859375	2	522.800414	1043.58628	-0.23097	-0.00012075	1.1211	0.0005861	0.89011	0.00046535	522.8008669072756	66.654	0.64401	66.654	66.452	67.096	0					27	15	3	0	0	0	0.027441	1	6217	6217		49.442	0	1	570400			4689	14396	3681	3690	5966	5966					0.06622592411895312
DLLRSTFSVF	10	Unmodified	_DLLRSTFSVF_					0	0	0			REV__nc|ENSG00000066248|Q8N5V2-3|NGEF	REV__nc|ENSG00000066248|Q8N5V2-3|NGEF	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.787109375	2	592.819138	1183.62372	1.6769	0.0009941	-0.59188	-0.00035088	1.085	0.00064323	592.8185266193797	148.52	0.54227	148.52	148.23	148.77	0					18	10	3	0	0	0	0.026956	1	17402	17402		19.997	0	1	90849	+		4690	16811	3682	3691	5967	5967					0.03925683677516645
DLLRSTKN	8	Unmodified	_DLLRSTKN_					0	0	0			REV__ENSG00000169884|ENST00000301061|WNT10B	REV__ENSG00000169884|ENST00000301061|WNT10B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	474.22564697265625	2	473.769448	945.524344	0.083036	3.934E-05	2.0866	0.00098857	2.1696	0.0010279	473.7710012642804	87.285	0.24975	84.658	84.549	84.799	-2.6269					7	4	2	0	0	0	0.028476	1	7413	7413		27.882	0	1	12427	+		4691	21491	3683	3692	5968	5968					0.049402857834252245
DLLVLFIN	8	Unmodified	_DLLVLFIN_					0	0	0		nc|ENSG00000142192|P05067-11|APP	nc|ENSG00000142192|P05067-11|APP	nc|ENSG00000142192|P05067-11|APP	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.24749755859375	2	473.784036	945.553519	-0.7307	-0.00034619	-3.7495	-0.0017765	-4.4802	-0.0021226	473.7821355098743	44.282	0.49435	44.282	44.123	44.618	0					17	10	3	0	0	0	0.028476	1	3006	3006		76.847	0	1	415500			4692	15068	3684	3693	5969	5969					0.07856430079698384
DLLVRAVEV	9	Unmodified	_DLLVRAVEV_					0	0	0			REV__ENSG00000131503|ENST00000360839|ANKHD1	REV__ENSG00000131503|ENST00000360839|ANKHD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.7539367675781	2	507.303124	1012.5917	2.7726	0.0014066	-1.8897	-0.00095863	0.88298	0.00044794	507.3016714501618	100.76	0.45478	100.76	100.61	101.06	0					14	10	2	0	0	0	0.027462	1	11208	11208		54.722	8.7501	1	257520	+		4693	19019	3685	3694	5970	5970					0.08590315994376851
DLLVSNFINGK	11	Unmodified	_DLLVSNFINGK_					0	0	0			REV__ENST00000461179.2_1_1:179339175-179437601:+|nuORF	REV__ENST00000461179.2_1_1:179339175-179437601:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	609.8019409179688	2	610.337695	1218.66084	2.0549	0.0012542	-1.123	-0.00068543	0.93183	0.00056873	610.8379630973459	110.99	0.44293	110.99	110.67	111.11	0					13	9	2	0	0	0	0.025277	1	12571	12571		32.751	0	1	160990	+		4694	20778	3686	3695	5971	5971					0.06025355223277984
DLLYQHMLA	9	Unmodified	_DLLYQHMLA_					0	0	0			REV__HECW2|p.I1319M|1|0.03|ENSG00000138411|chr2:196225831-196225831|T/C|missense_variant	REV__HECW2|p.I1319M|1|0.03|ENSG00000138411|chr2:196225831-196225831|T/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	552.27783203125	2	552.281334	1102.54812	-0.51324	-0.00028345	-2.1058	-0.001163	-2.619	-0.0014464	552.279873392987	114.49	1.7349	113.43	113.05	114.78	-1.055					64	34	3	0	0	0	0.38529	1	8462	8462		53.351	10.955	1	107080	+		4695	28197	3687	3696	5972	5972					0.0009438322558708023
DLLYQHMLA	9	Unmodified	_DLLYQHMLA_					0	0	0			REV__HECW2|p.I1319M|1|0.03|ENSG00000138411|chr2:196225831-196225831|T/C|missense_variant	REV__HECW2|p.I1319M|1|0.03|ENSG00000138411|chr2:196225831-196225831|T/C|missense_variant	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	552.281334	1102.54812	-0.51324	-0.00028345	-2.1058	-0.001163	-2.619	-0.0014464	552.279873392987	114.49	1.7349	113.43	113.05	114.78	-1.055	-0.028263	0.00092483	NaN	53.351	64	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107080	+		4696	28197	3687	3696							0.0009438322558708023
DLMRSEPVSM	10	Unmodified	_DLMRSEPVSM_					0	0	0		nc|ENSG00000141968|P15498-2|VAV1;ENSG00000141968|ENST00000602142|VAV1	nc|ENSG00000141968|P15498-2|VAV1	nc|ENSG00000141968|P15498-2|VAV1	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.3140869140625	2	582.773016	1163.53148	-0.36902	-0.00021505	-0.69058	-0.00040245	-1.0596	-0.0006175	582.772515307198	45.022	0.53693	45.022	44.795	45.332	0					17	11	3	0	0	0	0.027033	1	3073	3073		33.922	16.557	1	181750			4697	4950	3688	3697	5973	5973					-0.043744857226784006
DLNAVRLCF	9	Unmodified	_DLNAVRLCF_					0	0	0		nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;nc|ENSG00000173039|Q04206-4|RELA;ENST00000531484.5_1_11:65421851-65429483:-|nuORF;ENSG00000173039|ENST00000406246|RELA	nc|ENSG00000173039|Q04206-2|RELA	nc|ENSG00000173039|Q04206-2|RELA	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.85498046875	2	525.773677	1049.5328	0.28209	0.00014831	0.55404	0.0002913	0.83613	0.00043961	525.7738547367127	128.61	0.6412	127.52	127.32	127.96	-1.0933					18	12	2	0	0	0	0.027462	1	10111	10111		55.504	3.205	1	19531			4698	7344	3689	3698	5974	5974					0.010015164283913691
DLNENIVLL	9	Unmodified	_DLNENIVLL_					0	0	0			REV__tr|A0A7D7A2K8|A0A7D7A2K8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17485PE=4SV=1	REV__tr|A0A7D7A2K8|A0A7D7A2K8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17485PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.305908203125	2	521.792589	1041.57063	2.0986	0.001095	0.83208	0.00043418	2.9307	0.0015292	521.7917673230284	89.659	1.6842	88.357	87.938	89.622	-1.302					50	33	3	0	0	0	0.027456	1	7870	7870		47.916	0	1	45330	+		4699	32542	3690	3699	5975	5975					0.0515030589485832
DLNGPKKK	8	Unmodified	_DLNGPKKK_					0	0	0		ENSG00000083520|ENST00000377767|DIS3;nc|ENSG00000083520|Q9Y2L1-2|DIS3	ENSG00000083520|ENST00000377767|DIS3	ENSG00000083520|ENST00000377767|DIS3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	449.7595520019531	2	450.269084	898.523616	-0.15391	-6.9299E-05	-0.51562	-0.00023217	-0.66952	-0.00030146	450.2687157967255	73.75	0.9056	70.354	69.881	70.787	-3.3961					28	18	2	0	0	0	0.028476	1	5687	5687		53.351	0	1	64665			4700	1694	3691	3700	5976	5976					0.07029491134369437
DLNLAVAVH	9	Unmodified	_DLNLAVAVH_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;ENST00000469599.6_1_Y:21877495-21878275:-|nuORF;ENST00000492117.1_1_Y:21877982-21883284:-|nuORF	nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000012817|Q9BY66-2|KDM5D	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.3129577636719	2	476.266542	950.51853	-1.0421	-0.00049631	0.89981	0.00042855	-0.14227	-6.7758E-05	476.26682255550435	103.03	1.5792	102.35	101.98	103.56	-0.68459					78	31	3	0	0	0	0.027462	1	9508	9508		40.573	15.122	1	230280			4701	976	3692	3701	5977	5977					0.04129187271757928
DLNLKIPGGRR	11	Unmodified	_DLNLKIPGGRR_					0	0	0		ENST00000477629.1_1_3:58135593-58136214:+|nuORF	ENST00000477629.1_1_3:58135593-58136214:+|nuORF	ENST00000477629.1_1_3:58135593-58136214:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	619.867919921875	2	619.870028	1237.7255	-2.7857	-0.0017268	1.79	0.0011095	-0.99576	-0.00061724	619.8709153162803	147.4	3.9416	146.45	144.36	148.3	-0.9512					241	78	4	0	0	0	0.71789	1	12373	12373		23.523	4.4192	1	225770			4702	12480	3693	3702	5978	5978					0.11614974819917734
DLNPTVTKD	9	Unmodified	_DLNPTVTKD_					0	0	0			REV__ENST00000453159.5_1_21:37518557-37518635:-|nuORF	REV__ENST00000453159.5_1_21:37518557-37518635:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.8280944824219	2	501.758746	1001.50294	-1.0253	-0.00051448	0.13568	6.8078E-05	-0.88967	-0.0004464	501.7590389259337	74.182	0.84076	72.211	71.798	72.639	-1.9711					24	15	2	0	0	0	0.027425	1	6047	6047		69.628	5.4204	1	21621	+		4703	25990	3694	3703	5979	5979					0.002248559640520398
DLNRAGCY	8	Unmodified	_DLNRAGCY_					0	0	0			REV__nc|ENSG00000158717|Q96A37-2|RNF166	REV__nc|ENSG00000158717|Q96A37-2|RNF166	MULTI-SECPEP	OvCa9_classI_Rep3	3	456.7972106933594	2	456.205627	910.396701	0.40983	0.00018697	0.30319	0.00013832	0.71302	0.00032528	456.20559476509214	104.8	1.0391	103.45	103.06	104.09	-1.3482					29	19	2	0	0	0	0.028476	1	7357	7357		40.573	5.3719	1	25731	+		4704	20580	3695	3704	5980	5980					-0.062081780822722976
DLNRVSLFI	9	Unmodified	_DLNRVSLFI_					0	0	0			REV__ENST00000494069.1_1_3:197566242-197575018:+|nuORF	REV__ENST00000494069.1_1_3:197566242-197575018:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.7811279296875	2	538.808574	1075.60259	2.8938	0.0015592	2.8218	0.0015204	5.7156	0.0030796	539.3123884063851	90.064	0.42125	90.064	89.848	90.269	0					22	9	4	0	0	0	0.027462	1	9671	9671		32.812	11.865	1	455880	+		4705	26719	3696	3705	5981	5981					0.06781718368665679
DLNSRNVLV	9	Unmodified	_DLNSRNVLV_					0	0	0		ENSG00000204217|ENST00000374580|BMPR2;nc|ENSG00000204217|Q13873-2|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	MULTI-MSMS	OvCa9_classI_Rep2	2	515.7855834960938	2	515.288005	1028.56146	1.6626	0.00085671	-1.8275	-0.00094167	-0.16488	-8.4961E-05	515.2869087347317	28.904	0.97584	26.195	25.999	26.975	-2.7097					44	20	3	0	0	0	0.63422	1	688	688		27.882	5.9224	1	79121			4706	8956	3697	3706	5982	5982					0.04831957329179204
DLNVMKERVL	10	Unmodified	_DLNVMKERVL_					0	0	0		nc|ENSG00000173157|P59510-2|ADAMTS20;nc|ENSG00000173157|P59510|ADAMTS20;ENSG00000173157|ENST00000389420|ADAMTS20	nc|ENSG00000173157|P59510-2|ADAMTS20	nc|ENSG00000173157|P59510-2|ADAMTS20	MULTI-MSMS	OvCa9_classI_Rep3	3	608.8355712890625	2	608.839548	1215.66454	-3.2591	-0.0019843	-1.1512	-0.00070089	-4.4103	-0.0026851	608.8386735835178	151.65	1.4083	150.69	150.4	151.81	-0.95647					78	27	4	0	0	0	0.75313	1	12950	12950		24.519	0.99649	1	213430			4707	7353	3698	3707	5983	5983					0.06533701725493302
DLNVRPKTI	9	Unmodified	_DLNVRPKTI_					0	0	0		L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|57|1|sense;L1PA7_dup7105|chr8:140902960-140905176:-|1.928403484305532|0.1763547852274372|3.45|429.0|61|3|sense;L1PA7_dup9238|chr10:48372221-48377370:+|1.4943041569802586|0.2795461482764699|2.42|429.0|140|3|sense;L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|52|1|sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.448906025747238|0.1317034148076854|3.46|417.0|58|1|sense;L1PA3_dup1152|chr2:117623254-117629278:+|1.1606400945596698|0.0841542146032081|3.79|394.0|106|2|sense;L1PA2_dup23|chr1:43114528-43120516:-|1.3533449411662286|0.3152228216366226|2.1|404.0|22|1|sense;L1PA2_dup1619|chr5:71851116-71854174:+|2.376726425342643|0.0208621851436049|6.83|429.0|81|3|sense	L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|57|1|sense	L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|57|1|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	528.314208984375	2	528.314023	1054.61349	-0.96792	-0.00051137	0.098687	5.2138E-05	-0.86924	-0.00045923	528.3140932652811	74.308	2.3394	72.337	71.64	73.979	-1.9711					122	44	5	0	0	0	0.2077	1	6103	6103		75.043	5.4157	1	992360			4708	14683	3699	3708	5984	5984					0.08837120742964544
DLPAYEHEP	9	Unmodified	_DLPAYEHEP_					0	0	0		tr|A0A553SH61|A0A553SH61_NIACIYteAfamilysporulationproteinOS=NialliacirculansOX=1397GN=CEQ21_12310PE=4SV=1	tr|A0A553SH61|A0A553SH61_NIACIYteAfamilysporulationproteinOS=NialliacirculansOX=1397GN=CEQ21_12310PE=4SV=1	tr|A0A553SH61|A0A553SH61_NIACIYteAfamilysporulationproteinOS=NialliacirculansOX=1397GN=CEQ21_12310PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.81298828125	2	535.743096	1069.47164	-1.2284	-0.0006581	4.0164	0.0021518	2.7881	0.0014937	535.7451518003743	104.65	0.92801	102.53	102.22	103.15	-2.1192					25	17	2	0	0	0	0.027441	1	9528	9528		49.442	12.282	1	34008			4709	33242	3700	3709	5985	5985					-0.060317170700500355
DLPAYEHEP	9	Unmodified	_DLPAYEHEP_					0	0	0		tr|A0A553SH61|A0A553SH61_NIACIYteAfamilysporulationproteinOS=NialliacirculansOX=1397GN=CEQ21_12310PE=4SV=1	tr|A0A553SH61|A0A553SH61_NIACIYteAfamilysporulationproteinOS=NialliacirculansOX=1397GN=CEQ21_12310PE=4SV=1	tr|A0A553SH61|A0A553SH61_NIACIYteAfamilysporulationproteinOS=NialliacirculansOX=1397GN=CEQ21_12310PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	535.743096	1069.47164	1.2748	0.00068298	2.0943	0.001122	3.3691	0.001805	535.7438768028505	103.92	0.98985	102.48	102.24	103.23	-1.4347	-0.022763	-0.0014584	NaN	49.442	33	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30984			4710	33242	3700	3709							-0.060317170700500355
DLPELRRLLEP	11	Unmodified	_DLPELRRLLEP_					0	0	0		ENSG00000204438|ENST00000375896|GPANK1	ENSG00000204438|ENST00000375896|GPANK1	ENSG00000204438|ENST00000375896|GPANK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.9305725097656	3	450.92951	1349.7667	-0.051064	-2.3026E-05	-0.6035	-0.00027214	-0.65457	-0.00029516	450.9292022237175	65.678	1.2152	62.192	61.938	63.153	-3.4854					52	24	4	0	0	0	0.50203	1	4749	4749		53.597	1.4297	1	835430			4711	8984	3701	3710	5986	5986					0.10580691068776105
DLPELRRLLEP	11	Unmodified	_DLPELRRLLEP_					0	0	0		ENSG00000204438|ENST00000375896|GPANK1	ENSG00000204438|ENST00000375896|GPANK1	ENSG00000204438|ENST00000375896|GPANK1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	450.92951	1349.7667	2.7307	0.0012314	-2.7966	-0.0012611	-0.065886	-2.971E-05	450.92808735213725	64.933	1.3347	62.208	61.758	63.092	-2.7245	0.0080557	-0.0016248	NaN	53.597	67	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	353940			4712	8984	3701	3710							0.10580691068776105
DLPGVPGKD	9	Unmodified	_DLPGVPGKD_					0	0	0		nc|ENSG00000127980|O43933-2|PEX1;ENSG00000127980|ENST00000248633|PEX1;ENST00000484913.5_1_7:92116773-92148321:-|nuORF	nc|ENSG00000127980|O43933-2|PEX1	nc|ENSG00000127980|O43933-2|PEX1	MULTI-SECPEP	OvCa99_classI_Rep5	1	448.2915954589844	2	449.23745	896.460347	2.9598	0.0013297	-1.1311	-0.00050815	1.8287	0.00082153	449.2369877432377	84.492	0.58051	84.492	84.22	84.8	0					13	13	2	0	0	0	0.027462	1	8863	8863		13.454	0	1	103070			4713	3857	3702	3711	5987	5987					0.007975056264740488
DLPIAVRIRID	11	Unmodified	_DLPIAVRIRID_					0	0	0			REV__nc|ENSG00000107736|Q9H251-4|CDH23	REV__nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-MSMS	OvCa9_classI_Rep2	2	640.8893432617188	2	640.887887	1279.76122	-0.17045	-0.00010924	3.4317	0.0021993	3.2613	0.0020901	640.8899760073222	130.96	1.1409	130.73	130.4	131.54	-0.22697					67	22	4	0	0	0	0.62561	1	12903	12903		42.338	4.8299	1	368320	+		4714	17855	3703	3712	5988	5988					0.13253012276936715
DLPIAVRIRID	11	Unmodified	_DLPIAVRIRID_					0	0	0			REV__nc|ENSG00000107736|Q9H251-4|CDH23	REV__nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-MSMS	OvCa9_classI_Rep4_	4	640.88916015625	2	640.887887	1279.76122	4.2244	0.0027074	-1.1319	-0.00072543	3.0925	0.0019819	640.8870407090299	132.38	1.5362	130.88	130.54	132.07	-1.5015					82	30	4	0	0	0	0.65063	1	12799	12799		40.058	0.80534	1	355310	+		4715	17855	3703	3712	5989	5989					0.13253012276936715
DLPIKVLLE	9	Unmodified	_DLPIKVLLE_					0	0	0			REV__ENSG00000125999|ENST00000253354|BPIFB1	REV__ENSG00000125999|ENST00000253354|BPIFB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.8214111328125	2	520.323525	1038.6325	0.67813	0.00035285	-0.59082	-0.00030742	0.087308	4.5428E-05	520.3232990573031	143.1	0.34485	143.1	143.02	143.37	0					9	6	2	0	0	0	0.027462	1	16733	16733		34.173	7.4796	1	33225	+		4716	18765	3704	3713	5990	5990					0.11472657313993295
DLPKLHKLV	9	Unmodified	_DLPKLHKLV_					0	0	0		nc|ENSG00000285253|Q6N043-4|ZNF280D	nc|ENSG00000285253|Q6N043-4|ZNF280D	nc|ENSG00000285253|Q6N043-4|ZNF280D	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.302734375	2	531.837134	1061.65972	-0.64215	-0.00034152	1.0867	0.00057797	0.44459	0.00023645	531.8372781518975	122.6	0.39676	121.23	121.06	121.46	-1.3666					10	7	2	0	0	0	0.027462	1	11574	11574		17.365	3.5896	1	10525			4717	15384	3705	3714	5991	5991					0.1313518564502374
DLPLEPSVTK	10	Unmodified	_DLPLEPSVTK_					0	0	0		nc|ENSG00000008294|O60271-9|SPAG9;nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9	nc|ENSG00000008294|O60271-9|SPAG9	nc|ENSG00000008294|O60271-9|SPAG9	MULTI-SECPEP	OvCa9_classI_Rep2	2	549.291259765625	2	549.805697	1097.59684	-0.71837	-0.00039497	1.9791	0.0010881	1.2608	0.00069318	549.8065627959897	68.323	1.0909	65.703	65.474	66.565	-2.6203					58	21	4	0	0	0	0.026826	1	5455	5455		36.447	3.6343	1	325820			4718	915	3706	3715	5992	5992					0.05194575066343532
DLPLLLLNN	9	Unmodified	_DLPLLLLNN_					0	0	0		ENST00000447009.1_1_7:77314455-77325220:-|nuORF	ENST00000447009.1_1_7:77314455-77325220:-|nuORF	ENST00000447009.1_1_7:77314455-77325220:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	512.8087158203125	2	512.8055	1023.59645	1.2551	0.00064364	0.68124	0.00034934	1.9364	0.00099299	512.8055121618269	111.36	0.54155	111.36	111.16	111.7	0					19	11	3	0	0	0	0.36502	1	12662	12662		55.504	0.72789	1	278790			4719	12000	3707	3716	5993	5993					0.08559200137142398
DLPLLRAEI	9	Unmodified	_DLPLLRAEI_					0	0	0		ENSG00000144130|ENST00000688554|NT5DC4	ENSG00000144130|ENST00000688554|NT5DC4	ENSG00000144130|ENST00000688554|NT5DC4	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3102416992188	2	520.310949	1038.60735	0.14844	7.7234E-05	-2.0534	-0.0010684	-1.9049	-0.00099116	520.3105317003465	83.067	5.527	81.468	80.593	86.12	-1.5988					351	109	6	0	0	0	0.28934	1	7321	7321		64.207	12.872	1	45250000			4720	5131	3708	3717	5994	5994					0.08958602511415847
DLPPLPPPR	9	Unmodified	_DLPPLPPPR_					0	0	0		ENST00000301998.4_1_2:62423399-62449447:+|nuORF	ENST00000301998.4_1_2:62423399-62449447:+|nuORF	ENST00000301998.4_1_2:62423399-62449447:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2901916503906	2	501.292559	1000.57057	-1.4695	-0.00073667	-2.6975	-0.0013522	-4.167	-0.0020889	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.70177	1	11007	11007		17.365	1.7232	1	97838			4721	10196	3709	3718	5995	5995					0.07030350685511166
DLPSAVTLLK	10	Unmodified	_DLPSAVTLLK_					0	0	0		ENST00000557097.5_1_14:23938909-23939337:+|nuORF;ENST00000556378.5_1_14:23938909-23940216:+|nuORF;ENST00000553336.5_1_14:23938909-23944520:+|nuORF;nc|ENSG00000129460|Q8NEJ9-2|NGDN;ENSG00000129460|ENST00000408901|NGDN	ENST00000557097.5_1_14:23938909-23939337:+|nuORF	ENST00000557097.5_1_14:23938909-23939337:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.8302612304688	2	528.818607	1055.62266	0.80465	0.00042552	0.45185	0.00023895	1.2565	0.00066446	528.8193727558136	153.57	0.33937	153.57	153.4	153.74	0					8	5	2	0	0	0	0.026635	1	17989	17989		56.721	10.749	1	13873			4722	3930	3710	3719	5996	5996					0.09707469308614236
DLPSDDIDPS	10	Unmodified	_DLPSDDIDPS_					0	0	0			REV__tr|A0A553SKL7|A0A553SKL7_NIACIShikimatedehydrogenase(NADP(+))OS=NialliacirculansOX=1397GN=aroEPE=3SV=1	REV__tr|A0A553SKL7|A0A553SKL7_NIACIShikimatedehydrogenase(NADP(+))OS=NialliacirculansOX=1397GN=aroEPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2400512695312	2	537.235301	1072.45605	1.9894	0.0010688	-2.088	-0.0011217	-0.098613	-5.2978E-05	537.2332766827585	97.028	0.34039	97.028	96.795	97.135	0					12	7	2	0	0	0	0.026665	1	10631	10631		34.173	6.2903	1	224860	+		4723	30137	3711	3720	5997	5997					-0.07728048377771302
DLPVKAKRSTY	11	Unmodified	_DLPVKAKRSTY_					0	0	0		nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5;ENSG00000148308|ENST00000372097|GTF3C5;nc|ENSG00000148308|Q9Y5Q8-3|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-MSMS	OvCa9_classI_Rep4_	4	639.3637084960938	2	639.364244	1276.71394	-4.0344	-0.0025795	2.2611	0.0014457	-1.7733	-0.0011338	639.3655564998056	154.53	1.1695	153.08	152.77	153.94	-1.4516					91	28	4	0	0	0	0.69455	1	15323	15323		31.53	0	1	586460			4724	5399	3712	3721	5998	5998					0.08664733005957714
DLQAAPARGR	10	Unmodified	_DLQAAPARGR_					0	0	0		SCRIB|p.Y610Lfs*26|1|0.15|ENSG00000180900|chr8:143808895-143808896|-/A|frameshift_variant	SCRIB|p.Y610Lfs*26|1|0.15|ENSG00000180900|chr8:143808895-143808896|-/A|frameshift_variant	SCRIB|p.Y610Lfs*26|1|0.15|ENSG00000180900|chr8:143808895-143808896|-/A|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.790771484375	2	527.791247	1053.56794	-0.69189	-0.00036517	2.3977	0.0012655	1.7059	0.00090033	527.7922656061702	122.33	1.0866	122.11	121.67	122.76	-0.21803					27	21	2	0	0	0	0.027028	1	11908	11908		31.53	13.205	1	16160			4725	32803	3713	3722	5999	5999					0.04329895280557139
DLQAAPARGR	10	Unmodified	_DLQAAPARGR_					0	0	0		SCRIB|p.Y610Lfs*26|1|0.15|ENSG00000180900|chr8:143808895-143808896|-/A|frameshift_variant	SCRIB|p.Y610Lfs*26|1|0.15|ENSG00000180900|chr8:143808895-143808896|-/A|frameshift_variant	SCRIB|p.Y610Lfs*26|1|0.15|ENSG00000180900|chr8:143808895-143808896|-/A|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	527.791247	1053.56794	-0.65579	-0.00034612	1.8215	0.00096136	1.1657	0.00061524	527.792187018701	123.37	1.0396	122	121.51	122.55	-1.3666	-0.051471	-0.0003987	NaN	31.53	27	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15193			4726	32803	3713	3722							0.04329895280557139
DLQEIIKEI	9	Unmodified	_DLQEIIKEI_					0	0	0		STK3-NIPAL2|1|fusion;STK3-NIPAL2|3|fusion;STK3-NIPAL2|2|fusion;ENSG00000104375|ENST00000419617|STK3;STK3-NIPAL2|4|fusion;nc|ENSG00000104375|Q13188-2|STK3;STK3-NIPAL2|6|fusion;STK3-NIPAL2|5|fusion;nc|ENSG00000101109|Q13043-2|STK4;ENSG00000101109|ENST00000372806|STK4	STK3-NIPAL2|1|fusion	STK3-NIPAL2|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	550.8128051757812	2	550.813522	1099.61249	0.44129	0.00024307	-0.87894	-0.00048413	-0.43765	-0.00024106	550.8129439494999	106.56	1.7676	106.25	105.88	107.64	-0.30836					58	35	2	0	0	0	0.3249	1	9942	9942		60.118	5.3419	1	234630			4727	32925	3714	3723	6000	6000					0.06666861583403261
DLQEKNTLS	9	Unmodified	_DLQEKNTLS_					0	0	0		ENST00000228438.2_2_12:10005896-10005944:-|nuORF	ENST00000228438.2_2_12:10005896-10005944:-|nuORF	ENST00000228438.2_2_12:10005896-10005944:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	524.2713623046875	2	524.269478	1046.5244	-0.2502	-0.00013117	-1.6046	-0.00084127	-1.8548	-0.00097244	524.2684876090663	70.87	0.54342	70.87	70.565	71.109	0					47	13	5	0	0	0	0.14855	2	6815	6815;6822		85.161	6.897	1	5154100			4728	9712	3715	3724	6001;6002	6001					0.0030024099276033667
DLQGEVDSL	9	Unmodified	_DLQGEVDSL_					0	0	0		nc|ENSG00000126001|Q9BV73-2|CEP250;ENSG00000126001|ENST00000397527|CEP250;CEP250|p.E565Kfs*2|1|0.05|ENSG00000126001|chr20:35475622-35475622|G/-|frameshift_variant;CEP250|p.E913Afs*78|1|0.04|ENSG00000126001|chr20:35490787-35490788|-/C|frameshift_variant	nc|ENSG00000126001|Q9BV73-2|CEP250	nc|ENSG00000126001|Q9BV73-2|CEP250	MULTI-MSMS	OvCa99_classI_Rep5	1	488.23797607421875	2	488.235104	974.455655	1.3398	0.00065415	0.43119	0.00021052	1.771	0.00086467	488.2352365968101	83.057	1.6933	83.057	82.694	84.388	0					84	39	4	0	0	0	0.041116	1	8612	8612		125.81	15.694	1	7943400			4729	3760	3716	3725	6003	6003					-0.03259423306951703
DLQGMSLLR	9	Unmodified	_DLQGMSLLR_					0	0	0			REV__ENST00000475192.1_1_20:18448105-18453554:+|nuORF	REV__ENST00000475192.1_1_20:18448105-18453554:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.7974853515625	2	516.778959	1031.54336	-0.20036	-0.00010354	4.0689	0.0021027	3.8685	0.0019992	516.7810431031841	70.822	0.86635	70.822	70.722	71.589	0					39	21	3	0	0	0	0.02709	1	6924	6924		115.49	21.488	1	1555000	+		4730	19093	3717	3726	6004	6004					0.02885499082822207
DLQIEYAPS	9	Unmodified	_DLQIEYAPS_					0	0	0			REV__tr|A0A7D6VRA7|A0A7D6VRA7_9CLOTAlpha-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04820PE=3SV=1	REV__tr|A0A7D6VRA7|A0A7D6VRA7_9CLOTAlpha-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04820PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.7891235351562	2	518.253297	1034.49204	1.6769	0.00086906	3.1661	0.0016408	4.843	0.0025099	518.2547619945925	77.287	1.3347	77.287	76.799	78.134	0					65	31	3	0	0	0	0.027353	1	7812	7812		71.877	11.759	1	952220	+		4731	31400	3718	3727	6005	6005					-0.023825464102401384
DLQILFTFE	9	Unmodified	_DLQILFTFE_					0	0	0			REV__ENST00000479971.1_1_12:72291642-72301148:+|nuORF	REV__ENST00000479971.1_1_12:72291642-72301148:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	563.296630859375	2	563.294965	1124.57538	1.9035	0.0010722	1.3382	0.00075382	3.2417	0.0018261	563.2956795766477	119.11	0.37975	119.11	118.81	119.19	0					13	7	2	0	0	0	0.40818	1	13660	13660		51.193	3.2771	1	173320	+		4732	26447	3719	3728	6006	6006					0.0180719003762988
DLQILFTFE	9	Unmodified	_DLQILFTFE_					0	0	0			REV__ENST00000479971.1_1_12:72291642-72301148:+|nuORF	REV__ENST00000479971.1_1_12:72291642-72301148:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	563.294965	1124.57538	1.9035	0.0010722	1.3382	0.00075382	3.2417	0.0018261	563.2956795766477	119.11	0.37975	119.11	118.81	119.19	0	0	0	NaN	51.193	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173320	+		4733	26447	3719	3728							0.0180719003762988
DLQKELYI	8	Unmodified	_DLQKELYI_					0	0	0			REV__DNAJC1|p.L182P|1|0.06|ENSG00000136770|chr10:21919922-21919922|A/G|missense_variant	REV__DNAJC1|p.L182P|1|0.06|ENSG00000136770|chr10:21919922-21919922|A/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	512.27880859375	2	511.281857	1020.54916	1.3354	0.00068276	-0.42895	-0.00021932	0.90643	0.00046344	511.2808674249692	112.94	0.84319	111.86	111.61	112.45	-1.0753					27	16	2	0	0	0	0.028476	1	8269	8269		35.618	0	1	53272	+		4734	16319	3720	3729	6007	6007					0.039709208661292905
DLQKPRVF	8	Unmodified	_DLQKPRVF_					0	0	0		ENSG00000132938|ENST00000612955|MTUS2	ENSG00000132938|ENST00000612955|MTUS2	ENSG00000132938|ENST00000612955|MTUS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.7936706542969	2	501.790184	1001.56581	-1.2198	-0.00061207	4.3277	0.0021716	3.1079	0.0015595	501.7922584905618	48.531	1.2432	45.423	44.938	46.181	-3.1077					66	23	4	0	0	0	0.65582	1	2666	2666		52.299	4.3836	1	724700			4735	4184	3721	3730	6008	6008					0.06509466542763676
DLQKQLIKV	9	Unmodified	_DLQKQLIKV_					0	0	0		tr|A0A553SQM4|A0A553SQM4_NIACITypeVIIsecretionproteinEssBOS=NialliacirculansOX=1397GN=CEQ21_07935PE=4SV=1	tr|A0A553SQM4|A0A553SQM4_NIACITypeVIIsecretionproteinEssBOS=NialliacirculansOX=1397GN=CEQ21_07935PE=4SV=1	tr|A0A553SQM4|A0A553SQM4_NIACITypeVIIsecretionproteinEssBOS=NialliacirculansOX=1397GN=CEQ21_07935PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.302978515625	2	542.839874	1083.66519	-0.68253	-0.00037051	0.54866	0.00029783	-0.13387	-7.2671E-05	542.840153931583	62.206	0.53317	58.748	58.429	58.962	-3.4577					21	10	3	0	0	0	0.027411	1	4312	4312		74.255	16.025	1	33451			4736	34179	3722	3731	6009	6009					0.1267086443685912
DLQKQLIKV	9	Unmodified	_DLQKQLIKV_					0	0	0		tr|A0A553SQM4|A0A553SQM4_NIACITypeVIIsecretionproteinEssBOS=NialliacirculansOX=1397GN=CEQ21_07935PE=4SV=1	tr|A0A553SQM4|A0A553SQM4_NIACITypeVIIsecretionproteinEssBOS=NialliacirculansOX=1397GN=CEQ21_07935PE=4SV=1	tr|A0A553SQM4|A0A553SQM4_NIACITypeVIIsecretionproteinEssBOS=NialliacirculansOX=1397GN=CEQ21_07935PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.839874	1083.66519	-1.7212	-0.00093435	1.877	0.0010189	0.15581	8.4577E-05	542.8405770803968	61.282	0.41676	58.523	58.308	58.725	-2.7593	-0.11293	0.0010979	NaN	74.255	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14861			4737	34179	3722	3731							0.1267086443685912
DLQLQVQSET	10	Unmodified	_DLQLQVQSET_					0	0	0		MYH13|p.Q1539Hfs*44|1|0.11|ENSG00000006788|chr17:10311142-10311143|-/G|frameshift_variant;ENSG00000006788|ENST00000252172|MYH13	MYH13|p.Q1539Hfs*44|1|0.11|ENSG00000006788|chr17:10311142-10311143|-/G|frameshift_variant	MYH13|p.Q1539Hfs*44|1|0.11|ENSG00000006788|chr17:10311142-10311143|-/G|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.30859375	2	580.793318	1159.57208	2.6185	0.0015208	0.22332	0.00012971	2.8418	0.0016505	580.7931641126162	89.73	0.57304	89.73	89.275	89.848	0					18	13	2	0	0	0	0.026577	1	9560	9560		49.536	5.1589	1	270590			4738	14848	3723	3732	6010	6010					-0.0013210480703946814
DLQNSSVKI	9	Unmodified	_DLQNSSVKI_					0	0	0		ENSG00000183354|ENST00000399933|KIAA2026;ENST00000540714.1_1_9:5919686-5933837:-|nuORF	ENSG00000183354|ENST00000399933|KIAA2026	ENSG00000183354|ENST00000399933|KIAA2026	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.7242126464844	2	502.274564	1002.53457	0.27616	0.00013871	-2.1168	-0.0010632	-1.8406	-0.00092448	502.7751802792853	71.966	0.41791	71.966	71.668	72.086	0					12	9	2	0	0	0	0.027433	1	6961	6961		42.396	16.946	1	182430			4739	8070	3724	3733	6011	6011					0.03340848718016787
DLQPKQQP	8	Unmodified	_DLQPKQQP_					0	0	0			REV__NAV2|p.D962Ifs*69|1|0.03|ENSG00000166833|chr11:20036003-20036004|-/CATTCTTTTTCATCTTTTTA|frameshift_variant;REV__ENSG00000166833|ENST00000349880|NAV2	REV__ENSG00000166833|ENST00000349880|NAV2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.80914306640625	2	477.256174	952.497795	0.26174	0.00012492	-0.15488	-7.3916E-05	0.10686	5.1001E-05	477.25597583325856	66.774	0.7877	63.284	62.951	63.739	-3.4902					34	15	3	0	0	0	0.028476	1	4917	4917		19.36	0	1	226980	+		4740	21225;28697	3725	3734	6012	6012					0.019645968920940504
DLQPKQQP	8	Unmodified	_DLQPKQQP_					0	0	0			REV__NAV2|p.D962Ifs*69|1|0.03|ENSG00000166833|chr11:20036003-20036004|-/CATTCTTTTTCATCTTTTTA|frameshift_variant;REV__ENSG00000166833|ENST00000349880|NAV2	REV__ENSG00000166833|ENST00000349880|NAV2	MULTI-MATCH	OvCa99_classI_Rep5	1		2	477.256174	952.497795	0.64337	0.00030705	-0.79792	-0.00038081	-0.15456	-7.3763E-05	477.25552397273276	63.329	0.54862	63.329	63.058	63.607	0	-0.039313	-0.00038112	NaN	12.959	27	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	722670	+		4741	21225;28697	3725	3734							0.019645968920940504
DLQPKQQP	8	Unmodified	_DLQPKQQP_					0	0	0			REV__NAV2|p.D962Ifs*69|1|0.03|ENSG00000166833|chr11:20036003-20036004|-/CATTCTTTTTCATCTTTTTA|frameshift_variant;REV__ENSG00000166833|ENST00000349880|NAV2	REV__ENSG00000166833|ENST00000349880|NAV2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	477.256174	952.497795	0.72256	0.00034485	-0.56755	-0.00027087	0.15501	7.398E-05	477.25578030388886	66.188	0.69398	63.492	63.022	63.716	-2.6958	0.12397	-0.00016122	NaN	12.959	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47516	+		4742	21225;28697	3725	3734							0.019645968920940504
DLQRGRLS	8	Unmodified	_DLQRGRLS_					0	0	0		nc|ENSG00000152782|Q8TE04|PANK1;ZFYVE27|p.K254Efs*26|1|0.08|ENSG00000155256|chr10:97750419-97750420|-/G|frameshift_variant;nc|ENSG00000155256|Q5T4F4-4|ZFYVE27;nc|ENSG00000155256|Q5T4F4-7|ZFYVE27;nc|ENSG00000155256|Q5T4F4-8|ZFYVE27;nc|ENSG00000155256|Q5T4F4-2|ZFYVE27;ENSG00000155256|ENST00000684270|ZFYVE27;nc|ENSG00000155256|Q5T4F4-3|ZFYVE27	nc|ENSG00000152782|Q8TE04|PANK1	nc|ENSG00000152782|Q8TE04|PANK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.2779235839844	2	472.76724	943.519927	3.0169	0.0014263	2.7775	0.0013131	5.7945	0.0027394	472.7684482348916	90.051	0.29523	90.051	89.891	90.186	0					9	6	2	0	0	0	0.028476	1	9636	9636		55.504	19.886	1	160450			4743	15101	3726	3735	6013	6013					0.04590821360534392
DLQWEHEVL	9	Unmodified	_DLQWEHEVL_					0	0	0		nc|ENSG00000141013|O95995-2|GAS8;ENSG00000141013|ENST00000268699|GAS8;ENST00000569558.5_1_16:90103573-90109750:+|nuORF;ENST00000540721.5_1_16:90089090-90108732:+|nuORF	nc|ENSG00000141013|O95995-2|GAS8	nc|ENSG00000141013|O95995-2|GAS8	MULTI-MSMS	OvCa9_classI_Rep3	3	584.7830810546875	2	584.785296	1167.55604	-2.4265	-0.001419	-4.4691	-0.0026135	-6.8957	-0.0040325	584.7825737123078	86.182	1.1542	83.961	83.686	84.84	-2.2204					69	22	4	0	0	0	0.18193	1	5118	5118		79.451	5.196	1	1588000			4744	4890	3727	3736	6014	6014					-0.021037662532762624
DLRAAIAAPIL	11	Unmodified	_DLRAAIAAPIL_					0	0	0		nc|ENSG00000099998|P36269-2|GGT5;ENSG00000099998|ENST00000327365|GGT5;nc|ENSG00000099998|P36269-3|GGT5	nc|ENSG00000099998|P36269-2|GGT5	nc|ENSG00000099998|P36269-2|GGT5	MULTI-MSMS	OvCa9_classI_Rep2	2	562.3428344726562	2	562.345323	1122.67609	-1.142	-0.00064221	-2.621	-0.0014739	-3.7631	-0.0021161	562.3438081477608	141.84	4.7959	141.62	140.24	145.03	-0.22697					133	96	2	0	0	0	0.72064	1	14237	14237		22.58	0.61977	1	113870			4745	1992	3728	3737	6015	6015					0.11966266811123205
DLRDDVVKIT	10	Unmodified	_DLRDDVVKIT_					0	0	0		nc|ENSG00000151332|Q9NS73-3|MBIP;nc|ENSG00000151332|Q9NS73-2|MBIP;nc|ENSG00000151332|Q9NS73-5|MBIP;ENSG00000151332|ENST00000416007|MBIP	nc|ENSG00000151332|Q9NS73-3|MBIP	nc|ENSG00000151332|Q9NS73-3|MBIP	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.286376953125	2	587.327328	1172.6401	1.3538	0.0007951	-4.0582	-0.0023835	-2.7044	-0.0015884	587.3240433572756	149.23	0.78204	149.23	148.82	149.6	0					21	15	2	0	0	0	0.026782	1	17434	17434		37.812	1.3648	1	40646			4746	5547	3729	3738	6016	6016					0.060687648435987285
DLREGDLF	8	Unmodified	_DLREGDLF_					0	0	0		tr|A0A553STK4|A0A553STK4_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05045PE=3SV=1	tr|A0A553STK4|A0A553STK4_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05045PE=3SV=1	tr|A0A553STK4|A0A553STK4_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05045PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	482.755126953125	2	482.740357	963.46616	-0.14011	-6.7636E-05	0.69285	0.00033447	0.55274	0.00026683	482.74063956824017	57.71	1.6149	54.365	53.883	55.498	-3.3449					68	31	4	0	0	0	0.028476	1	3765	3765		38.806	0	1	451140			4747	34499	3730	3739	6017	6017					-0.017033958618412726
DLRFCYIGAP	10	Unmodified	_DLRFCYIGAP_					0	0	0			REV__Tigger2_dup43|chr1:52036089-52037207:-|1.0572414785124398|0.4218533099472232|1.33|428.0|84|3|anti-sense	REV__Tigger2_dup43|chr1:52036089-52037207:-|1.0572414785124398|0.4218533099472232|1.33|428.0|84|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.2401123046875	2	577.786784	1153.55902	-0.69256	-0.00040015	2.1696	0.0012535	1.477	0.00085339	577.7880964603619	63.813	0.59766	63.813	63.376	63.974	0					19	10	2	0	0	0	0.026871	1	5756	5756		29.15	9.1528	1	283210	+		4748	29503	3731	3740	6018	6018					-0.011622144001421475
DLRGENPTL	9	Unmodified	_DLRGENPTL_					0	0	0		ENSG00000188582|ENST00000340634|PAQR9	ENSG00000188582|ENST00000340634|PAQR9	ENSG00000188582|ENST00000340634|PAQR9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3152160644531	2	507.764363	1013.51417	0.31082	0.00015782	-2.6075	-0.001324	-2.2966	-0.0011661	507.7631081046558	114.7	0.47176	113.3	112.99	113.46	-1.3977					10	8	2	0	0	0	0.027462	1	10631	10631		51.193	12.171	1	6793.3			4749	8480	3732	3741	6019	6019					0.00795678058204885
DLRGENPTL	9	Unmodified	_DLRGENPTL_					0	0	0		ENSG00000188582|ENST00000340634|PAQR9	ENSG00000188582|ENST00000340634|PAQR9	ENSG00000188582|ENST00000340634|PAQR9	MULTI-MATCH	OvCa9_classI_Rep3	3		2	507.764363	1013.51417	-0.1603	-8.1396E-05	-4.1045	-0.0020841	-4.2648	-0.0021655	508.2624149833323	114.36	0.45518	113.31	113	113.45	-1.055	0.0034657	-0.0010493	NaN	51.193	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6023.4			4750	8480	3732	3741							0.00795678058204885
DLRGTLVKI	9	Unmodified	_DLRGTLVKI_					0	0	0			REV__nc|ENSG00000078177|Q86UW6-2|N4BP2	REV__nc|ENSG00000078177|Q86UW6-2|N4BP2	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.266357421875	2	507.818941	1013.62333	-0.46448	-0.00023587	1.8916	0.00096059	1.4271	0.00072472	507.81972085800686	86.388	0.47665	84.898	84.692	85.168	-1.4906					11	8	2	0	0	0	0.027447	1	7533	7533		56.721	5.3856	1	16611	+		4751	17021	3733	3742	6020	6020					0.1170630874833023
DLRIYILV	8	Unmodified	_DLRIYILV_					0	0	0		TTLL7|p.L216Qfs*26|1|0.47|ENSG00000137941|chr1:83942539-83942539|A/-|frameshift_variant;ENST00000472688.5_1_1:84383321-84408355:-|nuORF;nc|ENSG00000137941|Q6ZT98-2|TTLL7;nc|ENSG00000137941|Q6ZT98-3|TTLL7;ENSG00000137941|ENST00000260505|TTLL7	TTLL7|p.L216Qfs*26|1|0.47|ENSG00000137941|chr1:83942539-83942539|A/-|frameshift_variant	TTLL7|p.L216Qfs*26|1|0.47|ENSG00000137941|chr1:83942539-83942539|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.7759704589844	2	502.810585	1003.60662	-1.6307	-0.00081994	0.94712	0.00047622	-0.68359	-0.00034371	502.8108619326175	73.157	0.58115	69.761	69.495	70.076	-3.3961					17	11	2	0	0	0	0.028476	1	5643	5643		14.664	0	1	39677			4752	4636	3734	3743	6021	6021					0.10495807862378115
DLRIYILV	8	Unmodified	_DLRIYILV_					0	0	0		TTLL7|p.L216Qfs*26|1|0.47|ENSG00000137941|chr1:83942539-83942539|A/-|frameshift_variant;ENST00000472688.5_1_1:84383321-84408355:-|nuORF;nc|ENSG00000137941|Q6ZT98-2|TTLL7;nc|ENSG00000137941|Q6ZT98-3|TTLL7;ENSG00000137941|ENST00000260505|TTLL7	TTLL7|p.L216Qfs*26|1|0.47|ENSG00000137941|chr1:83942539-83942539|A/-|frameshift_variant	TTLL7|p.L216Qfs*26|1|0.47|ENSG00000137941|chr1:83942539-83942539|A/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	502.810585	1003.60662	-0.1854	-9.3219E-05	0.047315	2.379E-05	-0.13808	-6.9429E-05	502.81036805258265	71.874	0.62533	69.367	69.174	69.799	-2.5071	-0.1427	-0.00034447	NaN	14.664	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26257			4753	4636	3734	3743							0.10495807862378115
DLRIYILV	8	Unmodified	_DLRIYILV_					0	0	0		TTLL7|p.L216Qfs*26|1|0.47|ENSG00000137941|chr1:83942539-83942539|A/-|frameshift_variant;ENST00000472688.5_1_1:84383321-84408355:-|nuORF;nc|ENSG00000137941|Q6ZT98-2|TTLL7;nc|ENSG00000137941|Q6ZT98-3|TTLL7;ENSG00000137941|ENST00000260505|TTLL7	TTLL7|p.L216Qfs*26|1|0.47|ENSG00000137941|chr1:83942539-83942539|A/-|frameshift_variant	TTLL7|p.L216Qfs*26|1|0.47|ENSG00000137941|chr1:83942539-83942539|A/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	502.810585	1003.60662	-0.14823	-7.4534E-05	-0.027998	-1.4078E-05	-0.17623	-8.8611E-05	502.81042663449927	72.003	0.88741	69.4	69.13	70.018	-2.6023	-0.10889	-0.00042021	NaN	14.664	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44239			4754	4636	3734	3743							0.10495807862378115
DLRKCKII	8	Unmodified	_DLRKCKII_					0	0	0		nc|ENSG00000154027|Q9Y6K8-2|AK5;nc|ENSG00000154027|Q9Y6K8-3|AK5;ENSG00000154027|ENST00000354567|AK5	nc|ENSG00000154027|Q9Y6K8-2|AK5	nc|ENSG00000154027|Q9Y6K8-2|AK5	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.8030090332031	2	494.802237	987.589921	0.89967	0.00044516	1.3476	0.00066679	2.2473	0.001112	494.804728495101	97.443	1.0135	95.064	94.611	95.624	-2.3786					71	19	6	0	0	0	0.73938	1	8616	8616		31.955	7.7521	1	366760			4755	5709	3735	3744	6022	6022					0.09562983704768158
DLRLLPAL	8	Unmodified	_DLRLLPAL_					0	0	0		ENSG00000066557|ENST00000370952|LRRC40	ENSG00000066557|ENST00000370952|LRRC40	ENSG00000066557|ENST00000370952|LRRC40	MSMS	OvCa9_classI_Rep3	3	455.78961181640625	2	455.789653	909.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.42	1	106.15	105.65	106.65	-1.267								0	0	0	0.30129	1	7626	7626		68.787	10.005	1				4756	1353	3736	3745	6023	6023					0.1063525217384722
DLRMRKVASGE	11	Unmodified	_DLRMRKVASGE_					0	0	0			REV__nc|ENSG00000116604|Q14814-6|MEF2D	REV__nc|ENSG00000116604|Q14814-6|MEF2D	MULTI-MSMS	OvCa9_classI_Rep4_	4	631.3378295898438	2	631.337704	1260.66085	1.0422	0.00065797	-3.0343	-0.0019157	-1.9922	-0.0012577	631.3358609872256	67.254	1.3749	63.764	63.59	64.965	-3.4902					72	27	4	0	0	0	0.53283	1	4948	4948		33.922	7.8582	1	1166500	+		4757	18307	3737	3746	6024	6024					0.04095031951601413
DLRPNGTL	8	Unmodified	_DLRPNGTL_					0	0	0			REV__ENST00000573763.1_1_17:1675146-1678370:+|nuORF	REV__ENST00000573763.1_1_17:1675146-1678370:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	443.27508544921875	2	443.243067	884.47158	-0.84167	-0.00037306	0.96272	0.00042672	0.12105	5.3657E-05	443.24323800449696	69.618	0.92584	66.137	65.861	66.787	-3.4812					30	18	3	0	0	0	0.028476	1	5219	5219		74.255	29.724	1	43341	+		4758	19074	3738	3747	6025	6025					0.024723277206248895
DLRSQLAVM	9	Unmodified	_DLRSQLAVM_					0	0	0			REV__PLXNA3|p.I1452Rfs*8|1|0.29|ENSG00000130827|chrX:154468890-154468902|TTGATGCCATCAC/-|frameshift_variant	REV__PLXNA3|p.I1452Rfs*8|1|0.29|ENSG00000130827|chrX:154468890-154468902|TTGATGCCATCAC/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.8016967773438	2	516.778959	1031.54336	-0.53167	-0.00027475	-0.014142	-7.3082E-06	-0.54581	-0.00028206	516.7787789333098	51.042	0.99538	51.042	50.509	51.504	0					28	22	2	0	0	0	0.027441	1	3929	3929		40.778	1.972	1	474350	+		4759	18978	3739	3748	6026	6026					0.02885499082822207
DLRTKRLI	8	Unmodified	_DLRTKRLI_					0	0	0			REV__nc|ENSG00000091542|Q6P6C2-1|ALKBH5	REV__nc|ENSG00000091542|Q6P6C2-1|ALKBH5	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.267578125	2	507.824558	1013.63456	-1.348	-0.00068456	1.7908	0.00090941	0.44277	0.00022485	507.82483850994623	87.11	1.0214	84.934	84.633	85.654	-2.1768					32	19	3	0	0	0	0.028476	1	5279	5279		45.952	0	1	41574	+		4760	28758	3740	3749	6027	6027					0.12829130842476388
DLRTKRLI	8	Unmodified	_DLRTKRLI_					0	0	0			REV__nc|ENSG00000091542|Q6P6C2-1|ALKBH5	REV__nc|ENSG00000091542|Q6P6C2-1|ALKBH5	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	507.824558	1013.63456	-1.1894	-0.00060399	2.647	0.0013442	1.4576	0.00074023	507.8254315872601	87.554	0.35342	84.927	84.599	84.952	-2.6269	-0.0034603	0.00056181	NaN	45.952	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30312	+		4761	28758	3740	3749							0.12829130842476388
DLRVKYET	8	Unmodified	_DLRVKYET_					0	0	0		ENST00000427733.1_1_13:90882929-90883235:+|nuORF	ENST00000427733.1_1_13:90882929-90883235:+|nuORF	ENST00000427733.1_1_13:90882929-90883235:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.7672119140625	2	512.277106	1022.53966	1.4597	0.00074777	0.50989	0.00026121	1.9696	0.001009	512.2772199866693	83.633	0.54507	83.633	83.419	83.965	0					23	12	2	0	0	0	0.028476	1	8711	8711		45.952	0	1	454920			4762	11762	3741	3750	6028	6028					0.029291525806115715
DLSCSGFC	8	Unmodified	_DLSCSGFC_					0	0	0			REV__nc|ENSG00000162843|B1ANS9-2|WDR64	REV__nc|ENSG00000162843|B1ANS9-2|WDR64	MULTI-MSMS	OvCa99_classI_Rep5	1	416.1553955078125	2	416.154214	830.293875	0.59765	0.00024872	-1.3221	-0.00055019	-0.72444	-0.00030148	416.15391662201677	56.767	1.4437	56.767	56.498	57.941	0					73	33	5	0	0	0	0.72922	1	4745	4745		37.028	3.5129	1	6025400	+		4763	20784	3742	3751	6029	6029					-0.12806006865230302
DLSDPSKRQF	10	Unmodified	_DLSDPSKRQF_					0	0	0		nc|ENSG00000078725|O60477-3|BRINP1;ENSG00000078725|ENST00000265922|BRINP1	nc|ENSG00000078725|O60477-3|BRINP1	nc|ENSG00000078725|O60477-3|BRINP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	596.8031616210938	2	596.801477	1191.5884	1.0053	0.00059999	1.8599	0.00111	2.8652	0.00171	596.8024782166045	114.65	1.0322	113.26	112.94	113.97	-1.3977					42	19	3	0	0	0	0.52439	1	10662	10662		51.193	5.2204	1	104960			4764	1599	3743	3752	6030	6030					0.0002702114970816183
DLSDPSKRQF	10	Unmodified	_DLSDPSKRQF_					0	0	0		nc|ENSG00000078725|O60477-3|BRINP1;ENSG00000078725|ENST00000265922|BRINP1	nc|ENSG00000078725|O60477-3|BRINP1	nc|ENSG00000078725|O60477-3|BRINP1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	596.801477	1191.5884	1.0371	0.00061896	2.021	0.0012061	3.0581	0.0018251	596.8025218021336	114.41	0.94542	113.35	113.05	114	-1.055	-0.020828	-0.00046312	NaN	51.193	44	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115880			4765	1599	3743	3752							0.0002702114970816183
DLSEADLRIV	10	Unmodified	_DLSEADLRIV_					0	0	0		ENSG00000100852|ENST00000345122|ARHGAP5;nc|ENSG00000100852|Q13017-2|ARHGAP5	ENSG00000100852|ENST00000345122|ARHGAP5	ENSG00000100852|ENST00000345122|ARHGAP5	MULTI-MSMS	OvCa9_classI_Rep2	2	565.8079833984375	2	565.806228	1129.5979	1.7532	0.00099197	2.4612	0.0013926	4.2144	0.0023846	565.8074365868912	89.847	1.9606	88.545	88.087	90.047	-1.302					77	37	4	0	0	0	0.42962	1	7915	7915		64.207	0	1	358310			4766	2112	3744	3753	6031	6031					0.03828789435215185
DLSEDWRQKL	10	Unmodified	_DLSEDWRQKL_					0	0	0		nc|ENSG00000179709|Q86W28-2|NLRP8;ENSG00000179709|ENST00000291971|NLRP8	nc|ENSG00000179709|Q86W28-2|NLRP8	nc|ENSG00000179709|Q86W28-2|NLRP8	MULTI-MSMS	OvCa9_classI_Rep3	3	645.32568359375	2	645.327859	1288.64116	-0.50398	-0.00032523	-1.7265	-0.0011142	-2.2305	-0.0014394	645.3266872760835	99.389	1.4299	97.704	97.009	98.438	-1.685					95	27	5	0	0	0	0.74374	1	6726	6726		25.574	0	1	2398300			4767	7838	3745	3754	6032	6032					0.00838979212517188
DLSFLLVGGV	10	Unmodified	_DLSFLLVGGV_					0	0	0		nc|ENSG00000149639|O94964-3|MTCL2	nc|ENSG00000149639|O94964-3|MTCL2	nc|ENSG00000149639|O94964-3|MTCL2	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.29266357421875	2	510.292225	1018.5699	-0.60264	-0.00030752	-0.22965	-0.00011719	-0.83229	-0.00042471	510.2919760033697	79.571	1.3508	76.82	76.514	77.865	-2.7514					83	27	5	0	0	0	0.58282	1	6470	6470		44.117	6.9577	1	972660			4768	15086	3746	3755	6033	6033					0.06135511245838643
DLSIKEFTL	9	Unmodified	_DLSIKEFTL_					0	0	0			REV__ENST00000380324.7_1_15:63880600-63880953:+|nuORF	REV__ENST00000380324.7_1_15:63880600-63880953:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.8040771484375	2	533.294965	1064.57538	-1.8709	-0.00099775	2.7261	0.0014538	0.85521	0.00045608	533.2944883234259	45.863	0.83723	42.795	42.513	43.351	-3.0681					36	15	4	0	0	0	0.027462	1	2431	2431		21.96	0	1	47099	+		4769	25178	3747	3756	6034	6034					0.04567190037619184
DLSKAHATSL	10	Unmodified	_DLSKAHATSL_					0	0	0			REV__ENST00000544589.1_16:66519289-66519715:-|nuORF	REV__ENST00000544589.1_16:66519289-66519715:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.78125	2	521.780013	1041.54547	-0.16608	-8.6658E-05	-0.13751	-7.1751E-05	-0.30359	-0.00015841	521.7798827964735	66.858	1.3817	63.368	62.951	64.333	-3.4902					80	27	4	0	0	0	0.13777	1	4899	4899		104.06	2.4561	1	1215400	+		4770	27401	3748	3757	6035	6035					0.026362510922808724
DLSKAHATSL	10	Unmodified	_DLSKAHATSL_					0	0	0			REV__ENST00000544589.1_16:66519289-66519715:-|nuORF	REV__ENST00000544589.1_16:66519289-66519715:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.780013	1041.54547	1.0741	0.00056044	-1.181	-0.00061624	-0.10693	-5.5794E-05	521.7792121443866	66.203	1.2908	63.507	62.972	64.263	-2.6958	0.069335	-0.00055801	NaN	104.06	68	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	248290	+		4771	27401	3748	3757							0.026362510922808724
DLSKLAEGEQI	11	Unmodified	_DLSKLAEGEQI_					0	0	0		ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;CDC27|p.P272Sfs*8|1|0.05|ENSG00000004897|chr17:47156941-47156942|-/GA|frameshift_variant;ENST00000525495.6_2_17:45219385-45266538:-|nuORF	ENSG00000004897|ENST00000066544|CDC27	ENSG00000004897|ENST00000066544|CDC27	MULTI-SECPEP	OvCa9_classI_Rep3	3	601.79296875	2	601.816793	1201.61903	1.4473	0.00087101	-3.8486	-0.0023162	-2.4013	-0.0014452	602.3164742289888	78.147	0.84961	75.794	75.402	76.251	-2.3527					37	16	3	0	0	0	0.014064	1	4161	4161		101.46	0	1	35140			4772	837	3749	3758	6036	6036					0.026287547441143033
DLSKLAEGEQI	11	Unmodified	_DLSKLAEGEQI_					0	0	0		ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;CDC27|p.P272Sfs*8|1|0.05|ENSG00000004897|chr17:47156941-47156942|-/GA|frameshift_variant;ENST00000525495.6_2_17:45219385-45266538:-|nuORF	ENSG00000004897|ENST00000066544|CDC27	ENSG00000004897|ENST00000066544|CDC27	MULTI-SECPEP	OvCa9_classI_Rep4_	4	601.7951049804688	2	601.816793	1201.61903	0.62134	0.00037393	-4.461	-0.0026847	-3.8397	-0.0023108	602.3161968804671	78.698	0.99091	75.947	75.619	76.61	-2.7514					27	20	2	0	0	0	0.020057	1	6377	6377		50.034	0	1	33394			4773	837	3749	3758	6037	6037					0.026287547441143033
DLSKRLVL	8	Unmodified	_DLSKRLVL_					0	0	0			REV__PCDHA5|p.S723Lfs*69|1|0.35|ENSG00000204965|chr5:140823940-140823941|-/T|frameshift_variant	REV__PCDHA5|p.S723Lfs*69|1|0.35|ENSG00000204965|chr5:140823940-140823941|-/T|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.7254943847656	2	472.300384	942.586216	-0.54195	-0.00025596	0.58509	0.00027634	0.043137	2.0373E-05	472.3005606636186	43.414	0.80866	43.414	43.1	43.909	0					38	18	3	0	0	0	0.028476	1	2843	2843		44.117	16.235	1	826140	+		4774	23195	3750	3759	6038	6038					0.112626372025602
DLSLDRLVHTI	11	Unmodified	_DLSLDRLVHTI_					0	0	0			REV__CCDC116|p.G478D|1|0.14|ENSG00000161180|chr22:21636661-21636661|G/A|missense_variant	REV__CCDC116|p.G478D|1|0.14|ENSG00000161180|chr22:21636661-21636661|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	427.9086608886719	3	427.910227	1280.70885	-2.4401	-0.0010441	0.25392	0.00010866	-2.1862	-0.00093548	427.91030319374806	37.38	1.1325	34.67	34.337	35.469	-2.7097					47	22	3	0	0	0	0.70032	1	1663	1663		29.551	5.3189	1	126010	+		4775	15746	3751	3760	6039	6039					0.0797242914331946
DLSNQELKA	9	Unmodified	_DLSNQELKA_					0	0	0		AOC1|p.L56Pfs*23|1|0.09|ENSG00000002726|chr7:150856636-150856651|CTGCAGCCCTCCAGTA/-|frameshift_variant;ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1	AOC1|p.L56Pfs*23|1|0.09|ENSG00000002726|chr7:150856636-150856651|CTGCAGCCCTCCAGTA/-|frameshift_variant	AOC1|p.L56Pfs*23|1|0.09|ENSG00000002726|chr7:150856636-150856651|CTGCAGCCCTCCAGTA/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.31201171875	2	509.264196	1016.51384	0.79702	0.0004059	-3.0153	-0.0015356	-2.2182	-0.0011297	509.26265946762214	127.43	0.74181	127.2	126.94	127.68	-0.2359					21	14	2	0	0	0	0.027418	1	12462	12462		71.877	20.542	1	22497			4776	96	3752	3761	6040	6040					0.006242583383254896
DLSNQELKA	9	Unmodified	_DLSNQELKA_					0	0	0		AOC1|p.L56Pfs*23|1|0.09|ENSG00000002726|chr7:150856636-150856651|CTGCAGCCCTCCAGTA/-|frameshift_variant;ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1	AOC1|p.L56Pfs*23|1|0.09|ENSG00000002726|chr7:150856636-150856651|CTGCAGCCCTCCAGTA/-|frameshift_variant	AOC1|p.L56Pfs*23|1|0.09|ENSG00000002726|chr7:150856636-150856651|CTGCAGCCCTCCAGTA/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	509.264196	1016.51384	0.71627	0.00036477	-1.5029	-0.00076539	-0.78666	-0.00040062	509.26268741548944	128.15	0.64278	127.06	126.78	127.42	-1.0933	-0.02372	0.00059316	NaN	71.877	19	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10548			4777	96	3752	3761							0.006242583383254896
DLSNQELKA	9	Unmodified	_DLSNQELKA_					0	0	0		AOC1|p.L56Pfs*23|1|0.09|ENSG00000002726|chr7:150856636-150856651|CTGCAGCCCTCCAGTA/-|frameshift_variant;ENSG00000002726|ENST00000360937|AOC1;nc|ENSG00000002726|P19801-2|AOC1	AOC1|p.L56Pfs*23|1|0.09|ENSG00000002726|chr7:150856636-150856651|CTGCAGCCCTCCAGTA/-|frameshift_variant	AOC1|p.L56Pfs*23|1|0.09|ENSG00000002726|chr7:150856636-150856651|CTGCAGCCCTCCAGTA/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	509.264196	1016.51384	-0.044406	-2.2614E-05	-1.4931	-0.00076038	-1.5375	-0.00078299	509.26325463439224	128.45	1.0196	126.99	126.48	127.5	-1.4565	-0.091015	0.00060318	NaN	71.877	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27894			4778	96	3752	3761							0.006242583383254896
DLSPVPSSPG	10	Unmodified	_DLSPVPSSPG_					0	0	0			REV__ENST00000372642.4_1_9:131580806-131580920:+|nuORF	REV__ENST00000372642.4_1_9:131580806-131580920:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.3013916015625	2	478.24019	954.465826	-2.2258	-0.0010645	1.0155	0.00048567	-1.2102	-0.00057878	478.24051517389944	87.989	1.3082	85.386	85.028	86.336	-2.6027					47	25	3	0	0	0	0.027213	1	7497	7497		76.774	0	1	141100	+		4779	25007	3753	3762	6041	6041					-0.013228155816932485
DLSRGLGELVM	11	Oxidation (M)	_DLSRGLGELVM(Oxidation (M))_		DLSRGLGELVM(1)		DLSRGLGELVM(55)	0	0	1			REV__ENSG00000133597|ENST00000072869|ADCK2	REV__ENSG00000133597|ENST00000072869|ADCK2	MULTI-MSMS	OvCa99_classI_Rep5	1	603.3167114257812	2	603.313363	1204.61217	2.3297	0.0014055	-3.1487	-0.0018997	-0.81905	-0.00049414	603.311367770676	98.712	0.87488	98.712	98.121	98.996	0					61	20	4	0	0	0	0.48812	1	10867	10867		54.722	8.2656	1	6647700	+		4780	19149	3754	3763	6042	6042		438			0.01805118591869359
DLSSEFFFM	9	Unmodified	_DLSSEFFFM_					0	0	0		ENST00000304061.7_1_14:73959881-73960067:+|nuORF	ENST00000304061.7_1_14:73959881-73960067:+|nuORF	ENST00000304061.7_1_14:73959881-73960067:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.8078002929688	2	561.74425	1121.47395	2.1426	0.0012036	0.0090523	5.0851E-06	2.1516	0.0012087	561.7440048687838	127.27	0.71265	127.27	127.01	127.72	0					29	15	3	0	0	0	0.027456	1	14777	14777		47.916	16.386	1	446670			4781	10222	3755	3764	6043	6043					-0.08193004656573066
DLSSLLVIH	9	Unmodified	_DLSSLLVIH_					0	0	0			REV__nc|ENSG00000180663|Q9BXE9|VN1R3	REV__nc|ENSG00000180663|Q9BXE9|VN1R3	MULTI-MSMS	OvCa9_classI_Rep3	3	499.7880554199219	2	498.78985	995.565146	0.032773	1.6347E-05	-2.6432	-0.0013184	-2.6105	-0.0013021	498.78956440605833	118.98	1.288	117.95	117.58	118.87	-1.0271					73	25	4	0	0	0	0.42057	1	8983	8983		50.025	5.6474	1	100180	+		4782	29033	3756	3765	6044	6044					0.06718627103043673
DLSSSRKKL	9	Unmodified	_DLSSSRKKL_					0	0	0			REV__nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	REV__nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.8350219726562	2	517.303655	1032.59276	2.7421	0.0014185	3.5997	0.0018622	6.3418	0.0032806	517.3054739078215	102.61	0.55606	102.61	102.29	102.85	0					16	12	2	0	0	0	0.027433	1	11474	11474		64.207	5.4253	1	234590	+		4783	23305	3757	3766	6045	6045					0.07776530363298662
DLSTLAGKNV	10	Unmodified	_DLSTLAGKNV_					0	0	0		nc|ENSG00000099256|Q9NRG1-2|PRTFDC1;ENSG00000099256|ENST00000320152|PRTFDC1	nc|ENSG00000099256|Q9NRG1-2|PRTFDC1	nc|ENSG00000099256|Q9NRG1-2|PRTFDC1	MULTI-MSMS	OvCa99_classI_Rep5	1	509.2823486328125	2	509.282389	1016.55022	-1.0742	-0.00054705	0.33423	0.00017022	-0.73992	-0.00037683	509.2825318691654	70.08	0.83876	70.08	69.883	70.722	0					23	20	2	0	0	0	0.26424	1	6703	6703		85.161	2.9203	1	924240			4784	1963	3758	3767	6046	6046					0.04261135235049096
DLSWPPWPA	9	Unmodified	_DLSWPPWPA_					0	0	0			REV__ENST00000324225.8_1_11:117067889-117068036:+|nuORF	REV__ENST00000324225.8_1_11:117067889-117068036:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.8259887695312	2	534.761092	1067.50763	-0.37712	-0.00020167	0.47797	0.0002556	0.10085	5.3929E-05	534.76125619256	97.874	0.20526	95.495	95.368	95.573	-2.3786					5	3	2	0	0	0	0.027462	1	8670	8670		17.365	0	1	10059	+		4785	24472	3759	3768	6047	6047					-0.023422151025442872
DLTHKKIK	8	Unmodified	_DLTHKKIK_					0	0	0		ENST00000369171.3_1_1:197716442-197716544:-|nuORF	ENST00000369171.3_1_1:197716442-197716544:-|nuORF	ENST00000369171.3_1_1:197716442-197716544:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	491.8051452636719	2	491.805834	981.597115	-0.58237	-0.00028641	0.39596	0.00019474	-0.18641	-9.1676E-05	491.8059066811213	50.582	1.7337	47.788	47.331	49.065	-2.794					87	34	4	0	0	0	0.68714	1	3313	3313		45.952	0	1	434780			4786	10891	3760	3769	6048	6048					0.10558039576835654
DLTMALISGV	10	Unmodified	_DLTMALISGV_					0	0	0		tr|A0A553SJX3|A0A553SJX3_NIACIAminoacidtransporterOS=NialliacirculansOX=1397GN=CEQ21_17615PE=4SV=1	tr|A0A553SJX3|A0A553SJX3_NIACIAminoacidtransporterOS=NialliacirculansOX=1397GN=CEQ21_17615PE=4SV=1	tr|A0A553SJX3|A0A553SJX3_NIACIAminoacidtransporterOS=NialliacirculansOX=1397GN=CEQ21_17615PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	510.2928466796875	2	510.275718	1018.53688	-0.30458	-0.00015542	1.7066	0.00087081	1.402	0.0007154	510.27726475763495	78.655	0.64506	76.302	76.048	76.693	-2.3527					19	12	2	0	0	0	0.026688	1	4231	4231		32.812	0	1	11929			4787	33548	3761	3770	6049	6049					0.028355611314509588
DLTNGQIPN	9	Unmodified	_DLTNGQIPN_					0	0	0			REV__SF3B3|p.K976Dfs*14|1|0.12|ENSG00000189091|chr16:70567509-70567510|-/GACTATTTTACCATAATTTTTA|frameshift_variant	REV__SF3B3|p.K976Dfs*14|1|0.12|ENSG00000189091|chr16:70567509-70567510|-/GACTATTTTACCATAATTTTTA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.7757263183594	2	486.243264	970.471974	0.28833	0.0001402	2.4761	0.001204	2.7644	0.0013442	486.2426467643581	115.69	0.39577	114.29	114.07	114.46	-1.3977					10	7	2	0	0	0	0.027461	1	10791	10791		40.778	22.454	1	7121.7	+		4788	22760	3762	3771	6050	6050					-0.014442973502013956
DLTPQAVYIF	10	Unmodified	_DLTPQAVYIF_					0	0	0			REV__nc|ENSG00000168843|Q8N475-3|FSTL5	REV__nc|ENSG00000168843|Q8N475-3|FSTL5	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.3408813476562	2	583.808239	1165.60193	0.53676	0.00031337	1.8676	0.0010903	2.4044	0.0014037	583.8091691179756	141.96	0.89963	141.96	141.64	142.54	0					44	17	4	0	0	0	0.02658	1	16562	16562		54.776	6.8168	1	434070	+		4789	21410	3763	3772	6051	6051					0.02574878928930957
DLTSRCRF	8	Unmodified	_DLTSRCRF_					0	0	0			REV__nc|ENSG00000186272|P17021-3|ZNF17	REV__nc|ENSG00000186272|P17021-3|ZNF17	MULTI-MSMS	OvCa99_classI_Rep5	1	499.2497253417969	2	499.247826	996.481099	0.74535	0.00037211	2.458	0.0012272	3.2034	0.0015993	499.2485983298839	158.11	1.5358	158.11	157.65	159.19	0					84	31	4	0	0	0	0.71369	1	18534	18534		40.573	1.7665	1	141510	+		4790	22570	3764	3773	6052	6052					-0.01728227265505211
DLTSTELNT	9	Unmodified	_DLTSTELNT_					0	0	0			REV__ENST00000556666.5_1_14:88883017-88904763:+|nuORF	REV__ENST00000556666.5_1_14:88883017-88904763:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.2562255859375	2	497.240386	992.46622	-1.3622	-0.00067733	1.7263	0.00085838	0.36412	0.00018105	497.2411333962054	48.843	0.41801	45.735	45.553	45.971	-3.1077					10	7	2	0	0	0	0.027462	1	2708	2708		18.262	3.3972	1	21110	+		4791	16638	3765	3774	6053	6053					-0.03031440652512174
DLTTLHRLL	9	Unmodified	_DLTTLHRLL_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;ENST00000534210.6_1_11:6559916-6579528:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	OvCa9_classI_Rep2	2	540.7709350585938	2	541.321848	1080.62914	-0.46534	-0.0002519	0.025567	1.384E-05	-0.43977	-0.00023806	541.3219206318504	97.101	0.73602	96.142	95.777	96.513	-0.95857					34	14	3	0	0	0	0.027462	1	8815	8815		27.882	0	1	95848			4792	7829	3766	3775	6054	6054					0.09205407259992171
DLVCSLFLT	9	Unmodified	_DLVCSLFLT_					0	0	0			REV__ENST00000435761.5_1_3:184018386-184019655:+|nuORF	REV__ENST00000435761.5_1_3:184018386-184019655:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.3232421875	2	505.764986	1009.51542	-1.7356	-0.00087782	2.7329	0.0013822	0.99724	0.00050437	505.76660995970343	107.1	0.31641	105.22	105.01	105.33	-1.8785					7	5	2	0	0	0	0.027462	1	9742	9742		23.042	0	1	19425	+		4793	25774	3767	3776	6055	6055					0.01104176102717247
DLVDLSKLNEL	11	Unmodified	_DLVDLSKLNEL_					0	0	0			REV__nc|ENSG00000137821|Q8IUZ0-3|LRRC49	REV__nc|ENSG00000137821|Q8IUZ0-3|LRRC49	MULTI-MSMS	OvCa9_classI_Rep4_	4	629.8505859375	2	629.848093	1257.68163	-0.76347	-0.00048087	2.0875	0.0013148	1.324	0.00083395	629.8490645395771	92.583	1.5683	90.068	89.595	91.163	-2.5147					91	31	4	0	0	0	0.51772	1	8035	8035		28.081	7.2443	1	1025100	+		4794	19483	3768	3777	6056	6056					0.06309900812289015
DLVEHFKK	8	Unmodified	_DLVEHFKK_					0	0	0		nc|ENSG00000111679|P29350-2|PTPN6;ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6	nc|ENSG00000111679|P29350-2|PTPN6	nc|ENSG00000111679|P29350-2|PTPN6	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3355712890625	2	508.282192	1014.54983	0.91104	0.00046307	1.6099	0.00081826	2.5209	0.0012813	508.2830006043991	139.89	0.21945	139.89	139.7	139.92	0					6	4	2	0	0	0	0.028476	1	16313	16313		40.573	10.069	1	14245			4795	2843	3769	3778	6057	6057					0.04313760305853975
DLVENGQS	8	Unmodified	_DLVENGQS_					0	0	0		tr|A0A553SJY7|A0A553SJY7_NIACICelldivisionproteinFtsAOS=NialliacirculansOX=1397GN=CEQ21_17585PE=4SV=1	tr|A0A553SJY7|A0A553SJY7_NIACICelldivisionproteinFtsAOS=NialliacirculansOX=1397GN=CEQ21_17585PE=4SV=1	tr|A0A553SJY7|A0A553SJY7_NIACICelldivisionproteinFtsAOS=NialliacirculansOX=1397GN=CEQ21_17585PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	430.2748718261719	2	431.201064	860.387576	0.034228	1.4759E-05	-1.6915	-0.00072938	-1.6573	-0.00071462	431.20029029058304	109.02	0.76429	107.29	107.02	107.79	-1.7256					21	14	2	0	0	0	0.028476	1	10031	10031		35.618	0	1	24245			4796	33553	3770	3779	6058	6058					-0.048202481669363806
DLVKKSEF	8	Unmodified	_DLVKKSEF_					0	0	0			REV__tr|A0A553SKB4|A0A553SKB4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_18305PE=4SV=1	REV__tr|A0A553SKB4|A0A553SKB4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_18305PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	482.7831726074219	2	483.26875	964.522947	-0.8817	-0.0004261	0.82187	0.00039718	-0.059834	-2.8916E-05	483.26888014030993	81.491	1.0168	78.781	78.445	79.461	-2.7106					32	20	2	0	0	0	0.028476	1	6665	6665		51.335	5.3835	1	109310	+		4797	30104	3771	3780	6059	6059					0.03926651694678185
DLVKYVKQSFA	11	Unmodified	_DLVKYVKQSFA_					0	0	0		tr|A0A7D6VN13|A0A7D6VN13_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_15725PE=4SV=1	tr|A0A7D6VN13|A0A7D6VN13_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_15725PE=4SV=1	tr|A0A7D6VN13|A0A7D6VN13_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_15725PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	432.72064208984375	3	433.243206	1296.70779	0.63826	0.00027652	-2.0992	-0.00090946	-1.4609	-0.00063294	433.24132292185544	46.304	0.82861	46.304	46.024	46.852	0					37	18	3	0	0	0	0.026068	1	3236	3236		16.53	2.4438	1	175270			4798	34674	3772	3781	6060	6060					0.07130214774429078
DLVRKLIVLDP	11	Unmodified	_DLVRKLIVLDP_					0	0	0		ENSG00000152495|ENST00000282356|CAMK4	ENSG00000152495|ENST00000282356|CAMK4	ENSG00000152495|ENST00000282356|CAMK4	MULTI-SECPEP	OvCa99_classI_Rep5	1	640.266845703125	2	640.900463	1279.78637	2.0335	0.0013033	-0.016476	-1.056E-05	2.0171	0.0012927	640.9002595713051	125.9	0.60728	125.9	125.62	126.23	0					30	12	3	0	0	0	0.026158	1	14540	14540		10.587	8.5588	1	300810			4799	5628	3773	3782	6061	6061					0.15767067079514163
DLVRRILA	8	Unmodified	_DLVRRILA_					0	0	0			REV__ENSG00000101695|ENST00000217740|RNF125	REV__ENSG00000101695|ENST00000217740|RNF125	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.7773742675781	2	478.306001	954.597449	0.35201	0.00016837	-4.0787	-0.0019509	-3.7267	-0.0017825	478.3035674882834	43.492	0.29813	40.783	40.608	40.906	-2.7097					6	5	2	0	0	0	0.028476	1	2427	2427		35.201	3.2459	1	10143	+		4800	17514	3774	3783	6062	6062					0.11833459296713045
DLVSVKLAL	9	Unmodified	_DLVSVKLAL_					0	0	0		CON__Q8VED5	CON__Q8VED5	CON__Q8VED5	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.2795715332031	2	479.302593	956.590633	-0.41879	-0.00020073	0.15005	7.1918E-05	-0.26875	-0.00012881	479.3025050397978	95.222	0.59301	94.194	93.972	94.565	-1.0281					22	11	2	0	0	0	0.027217	1	8573	8573		82.241	27.464	1	44764		+	4801	661	3775	3784	6063	6063					0.11060101625469088
DLVTKVVDV	9	Unmodified	_DLVTKVVDV_					0	0	0		SPEF2|p.K1537Sfs*4|1|0.5|ENSG00000152582|chr5:35793211-35793211|G/-|frameshift_variant;nc|ENSG00000152582|Q9C093-2|SPEF2;ENSG00000152582|ENST00000356031|SPEF2	SPEF2|p.K1537Sfs*4|1|0.5|ENSG00000152582|chr5:35793211-35793211|G/-|frameshift_variant	SPEF2|p.K1537Sfs*4|1|0.5|ENSG00000152582|chr5:35793211-35793211|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.3019104003906	2	494.289682	986.564812	-0.98356	-0.00048616	-0.9392	-0.00046424	-1.9228	-0.0009504	494.28921154735457	95.305	1.1557	92.836	92.36	93.516	-2.4685					41	22	2	0	0	0	0.027462	1	8343	8343		32.812	3.6629	1	139620			4802	5632	3776	3785	6064	6064					0.07099207383191697
DLVVFLSR	8	Unmodified	_DLVVFLSR_					0	0	0			REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.7483215332031	2	474.779285	947.544017	1.7875	0.00084866	0.72232	0.00034294	2.5098	0.0011916	474.7793569852449	90.678	0.27484	90.678	90.541	90.816	0					11	6	2	0	0	0	0.028476	1	9752	9752		10.866	0	1	297980	+		4803	19775	3777	3786	6065	6065					0.06814661794203403
DLWAQHEE	8	Unmodified	_DLWAQHEE_					0	0	0			REV__ENSG00000166004|ENST00000325212|CEP295	REV__ENSG00000166004|ENST00000325212|CEP295	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.798583984375	2	514.227613	1026.44067	2.7783	0.0014287	2.688	0.0013822	5.4663	0.0028109	514.2291509920047	100.91	0.41885	100.91	100.73	101.15	0					18	9	3	0	0	0	0.028476	1	11195	11195		56.721	8.8055	1	390110	+		4804	21148	3778	3787	6066	6066					-0.07148870384276051
DLWEQQIPVL	10	Unmodified	_DLWEQQIPVL_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-MSMS	OvCa9_classI_Rep2	2	620.8318481445312	2	620.832246	1239.64994	-1.2545	-0.00077886	0.78325	0.00048627	-0.4713	-0.0002926	620.8326870345176	98.983	3.0275	98.09	97.757	100.78	-0.89305					162	60	6	0	0	0	0.27679	1	9028	9028		93.195	18.94	1	2033000	+		4805	21856	3779	3788	6067	6067					0.039699528490018565
DLWLHWVV	8	Unmodified	_DLWLHWVV_					0	0	0			REV__ENST00000538886.5_1_17:73233291-73233537:-|nuORF	REV__ENST00000538886.5_1_17:73233291-73233537:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	534.8115844726562	2	534.287277	1066.56	-0.60308	-0.00032222	4.1776	0.002232	3.5745	0.0019098	534.289452665359	92.499	0.60325	90.474	90.315	90.918	-2.0241					20	12	2	0	0	0	0.028476	1	5862	5862		21.702	0	1	62156	+		4806	27331	3780	3789	6068	6068					0.029383680310729687
DLWQRHLE	8	Unmodified	_DLWQRHLE_					0	0	0		ENSG00000262484|ENST00000571838|CCER2	ENSG00000262484|ENST00000571838|CCER2	ENSG00000262484|ENST00000571838|CCER2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.3673706054688	2	548.780348	1095.54614	0.41221	0.00022621	3.3551	0.0018412	3.7673	0.0020674	548.7816022711426	68.445	0.49052	64.955	64.622	65.113	-3.4902					14	9	2	0	0	0	0.028476	1	5092	5092		31.955	5.1588	1	16224			4807	9508	3781	3790	6069	6069					0.002190905319821468
DLYKDRKLLSA	11	Unmodified	_DLYKDRKLLSA_					0	0	0		ENSG00000184702|ENST00000455784|SEPTIN5;nc|ENSG00000284874|Q99719-2|SEPTIN5;ENST00000477238.1_1_22:19707079-19707537:+|nuORF	ENSG00000184702|ENST00000455784|SEPTIN5	ENSG00000184702|ENST00000455784|SEPTIN5	MULTI-MSMS	OvCa9_classI_Rep3	3	441.2543640136719	3	441.253993	1320.74015	1.4046	0.00061976	-0.43491	-0.00019191	0.96964	0.00042786	441.2537172485591	65.982	1.8287	63.036	62.554	64.383	-2.9459					68	35	4	0	0	0	0.69015	1	2683	2683		33.039	6.976	1	107960			4808	8185	3782	3791	6070	6070					0.0926100217743624
DLYKDRKLLSA	11	Unmodified	_DLYKDRKLLSA_					0	0	0		ENSG00000184702|ENST00000455784|SEPTIN5;nc|ENSG00000284874|Q99719-2|SEPTIN5;ENST00000477238.1_1_22:19707079-19707537:+|nuORF	ENSG00000184702|ENST00000455784|SEPTIN5	ENSG00000184702|ENST00000455784|SEPTIN5	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	441.253993	1320.74015	-0.53907	-0.00023787	1.0214	0.00045069	0.48232	0.00021282	441.2542307404954	66.533	1.031	63.043	62.708	63.739	-3.4902	0.0035386	0.0015046	NaN	33.039	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52971			4809	8185	3782	3791							0.0926100217743624
DLYKELAL	8	Unmodified	_DLYKELAL_					0	0	0			REV__nc|ENSG00000197256|Q63ZY3-3|KANK2	REV__nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.29339599609375	2	482.771126	963.527698	0.15346	7.4085E-05	0.072822	3.5156E-05	0.22628	0.00010924	482.77091679470885	89.462	1.8964	86.887	86.264	88.161	-2.575					55	37	2	0	0	0	0.028476	1	7821	7821		35.618	5.1146	1	122910	+		4810	22905	3783	3792	6071	6071					0.04447535837425676
DLYKILSIL	9	Unmodified	_DLYKILSIL_					0	0	0			REV__tr|A0A7D7A5X0|A0A7D7A5X0_9CLOTDUF3784domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08360PE=4SV=1	REV__tr|A0A7D7A5X0|A0A7D7A5X0_9CLOTDUF3784domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08360PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.2850952148438	2	539.33135	1076.64815	-0.12771	-6.8881E-05	-3.1102	-0.0016774	-3.2379	-0.0017463	539.3295415134706	91.526	0.76084	89.502	89.231	89.992	-2.0241					27	14	3	0	0	0	0.027441	1	5753	5753		40.778	1.5253	1	43608	+		4811	32645	3784	3793	6072	6072					0.11288943831050346
DLYNREIF	8	Unmodified	_DLYNREIF_					0	0	0		tr|A0A7D6VY63|A0A7D6VY63_9CLOTStageIIIsporulationproteinAAOS=ClostridiumintestinaleOX=36845GN=spoIIIAAPE=4SV=1	tr|A0A7D6VY63|A0A7D6VY63_9CLOTStageIIIsporulationproteinAAOS=ClostridiumintestinaleOX=36845GN=spoIIIAAPE=4SV=1	tr|A0A7D6VY63|A0A7D6VY63_9CLOTStageIIIsporulationproteinAAOS=ClostridiumintestinaleOX=36845GN=spoIIIAAPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.2586059570312	2	535.269281	1068.52401	-1.222	-0.00065408	2.6697	0.001429	1.4478	0.00077495	535.2712529084775	86.41	1.1308	84.919	84.196	85.327	-1.4906					29	21	2	0	0	0	0.028476	1	7453	7453		57.811	13.694	1	18099			4812	35319	3785	3794	6073	6073					-0.00751133936455517
DLYQRVRKRLR	11	Unmodified	_DLYQRVRKRLR_					0	0	0			REV__ENST00000375310.5_2_13:115000559-115004790:+|nuORF	REV__ENST00000375310.5_2_13:115000559-115004790:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	501.6341247558594	3	501.639064	1501.89536	-7.1575	-0.0035905	-2.8121	-0.0014107	-9.9696	-0.0050012	501.63774554440306	163.54	2.3462	162.14	160.37	162.72	-1.3925					135	52	3	0	0	0	0.7257	1	14273	14273		6.3209	0.31984	1	91935	+		4813	18927	3786	3795	6074	6074					0.16449090822356993
DLYVHISVSV	10	Unmodified	_DLYVHISVSV_					0	0	0		ENST00000299204.4_1_14:104025949-104026138:-|nuORF	ENST00000299204.4_1_14:104025949-104026138:-|nuORF	ENST00000299204.4_1_14:104025949-104026138:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	565.7885131835938	2	566.305864	1130.59717	-0.69635	-0.00039435	-0.38202	-0.00021634	-1.0784	-0.00061068	566.305500955142	94.892	1.2998	92.996	92.612	93.911	-1.8956					74	25	4	0	0	0	0.026606	1	6194	6194		52.937	1.744	1	418090			4814	10158	3787	3796	6075	6075					0.037099947861634064
DMCLTDHQV	9	Unmodified	_DMCLTDHQV_					0	0	0		ENST00000548578.1_1_12:56999598-57000129:-|nuORF	ENST00000548578.1_1_12:56999598-57000129:-|nuORF	ENST00000548578.1_1_12:56999598-57000129:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.30712890625	2	531.223159	1060.43177	-0.4639	-0.00024644	-1.2932	-0.00068698	-1.7571	-0.00093342	531.2225338825068	53.771	0.64995	53.771	53.564	54.214	0					26	15	3	0	0	0	0.027455	1	4306	4306		42.396	6.7778	1	1081200			4815	13562	3788	3797	6076	6076					-0.09603303336621138
DMDIVEET	8	Unmodified	_DMDIVEET_					0	0	0			REV__tr|A0A7D6VPR8|A0A7D6VPR8_9CLOTAntisigmafactorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12680PE=4SV=1	REV__tr|A0A7D6VPR8|A0A7D6VPR8_9CLOTAntisigmafactorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12680PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.3005065917969	2	476.202415	950.390278	0.21164	0.00010078	3.9241	0.0018687	4.1358	0.0019695	476.2042837189524	66.663	0.34387	63.173	63.049	63.393	-3.4902					10	6	2	0	0	0	0.028476	1	4870	4870		35.201	0	1	33444	+		4816	31269	3789	3798	6077	6077					-0.08690160824312443
DMEATLWIGL	10	Unmodified	_DMEATLWIGL_					0	0	0		LY75|p.S1527*|1|0.06|ENSG00000054219|chr2:159810645-159810645|G/-|frameshift_variant;ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75	LY75|p.S1527*|1|0.06|ENSG00000054219|chr2:159810645-159810645|G/-|frameshift_variant	LY75|p.S1527*|1|0.06|ENSG00000054219|chr2:159810645-159810645|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	574.7879028320312	2	574.78645	1147.55835	-1.3785	-0.00079234	0.71864	0.00041306	-0.65986	-0.00037928	574.786764539179	42.172	1.3413	39.191	38.959	40.3	-2.9804					66	25	4	0	0	0	0.66721	1	1934	1934		34.173	0.65696	1	417380			4817	1206	3790	3799	6078	6078					-0.009530538398394128
DMEKAPEGK	9	Unmodified	_DMEKAPEGK_					0	0	0		nc|ENSG00000111642|Q14839-2|CHD4;ENSG00000111642|ENST00000544040|CHD4	nc|ENSG00000111642|Q14839-2|CHD4	nc|ENSG00000111642|Q14839-2|CHD4	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.7602844238281	2	502.739499	1003.46445	-1.1139	-0.00056003	-2.585	-0.0012996	-3.6989	-0.0018596	502.7380835395376	65.732	0.5145	65.732	65.507	66.022	0					23	12	3	0	0	0	0.027462	1	6022	6022		39.253	0	1	1098300			4818	14960	3791	3800	6079	6079					-0.03714772942112177
DMEKARKIYE	10	Unmodified	_DMEKARKIYE_					0	0	0			REV__DDX54|p.S530Y|1|0.15|ENSG00000123064|chr12:113165858-113165858|G/T|missense_variant	REV__DDX54|p.S530Y|1|0.15|ENSG00000123064|chr12:113165858-113165858|G/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	428.2197265625	3	428.220184	1281.63872	-0.24555	-0.00010515	-1.9322	-0.00082739	-2.1777	-0.00093254	428.2193867744313	38.772	2.0402	38.772	38.486	40.526	0					115	45	6	0	0	0	0.66944	1	2248	2248		33.922	0	1	8888100	+		4819	16280	3792	3801	6080	6080					0.00916807483190496
DMEMLTAIHN	10	Unmodified	_DMEMLTAIHN_					0	0	0		tr|A0A553SQC1|A0A553SQC1_NIACICof-typeHAD-IIBfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_24620PE=4SV=1	tr|A0A553SQC1|A0A553SQC1_NIACICof-typeHAD-IIBfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_24620PE=4SV=1	tr|A0A553SQC1|A0A553SQC1_NIACICof-typeHAD-IIBfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_24620PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.7939453125	2	587.765191	1173.51583	1.8843	0.0011075	-2.8568	-0.0016791	-0.97249	-0.0005716	587.7634456487274	91.41	0.6206	91.41	91.174	91.794	0					31	14	4	0	0	0	0.026659	1	9899	9899		54.776	10.399	1	1125500			4820	34145	3793	3802	6081	6081					-0.06398772239708705
DMERRKKRRQH	11	Unmodified	_DMERRKKRRQH_					0	0	0			REV__ENSG00000267796|ENST00000301159|LIN37	REV__ENSG00000267796|ENST00000301159|LIN37	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.7728881835938	3	513.951425	1538.83244	-0.91914	-0.00047239	-0.68353	-0.0003513	-1.6027	-0.00082369	513.9508372221062	69.772	1.0237	66.29	66.057	67.081	-3.4812					52	20	4	0	0	0	0.026277	1	5318	5318		17.833	0.6664	1	182120	+		4821	23593	3794	3803	6082	6082					0.0845820176266443
DMERRKKRRQH	11	Unmodified	_DMERRKKRRQH_					0	0	0			REV__ENSG00000267796|ENST00000301159|LIN37	REV__ENSG00000267796|ENST00000301159|LIN37	MULTI-MATCH	OvCa9_classI_Rep2	2		3	513.951425	1538.83244	-0.74238	-0.00038155	-0.51524	-0.00026481	-1.2576	-0.00064636	513.9508696702236	68.855	1.0971	66.234	65.869	66.966	-2.6203	-0.022022	0.0015774	NaN	17.833	41	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62324	+		4822	23593	3794	3803							0.0845820176266443
DMERRKKRRQH	11	Unmodified	_DMERRKKRRQH_					0	0	0			REV__ENSG00000267796|ENST00000301159|LIN37	REV__ENSG00000267796|ENST00000301159|LIN37	MULTI-MATCH	OvCa9_classI_Rep3	3		3	513.951425	1538.83244	1.0163	0.00052234	-2.6148	-0.0013439	-1.5985	-0.00082154	513.9500883395453	69.059	0.94759	66.244	66.013	66.961	-2.8144	-0.012092	-0.0016598	NaN	17.833	38	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87353	+		4823	23593	3794	3803							0.0845820176266443
DMFSPIRDD	9	Unmodified	_DMFSPIRDD_					0	0	0		nc|ENSG00000139350|Q8NHV4-2|NEDD1;ENSG00000139350|ENST00000266742|NEDD1;nc|ENSG00000139350|Q8NHV4-3|NEDD1	nc|ENSG00000139350|Q8NHV4-2|NEDD1	nc|ENSG00000139350|Q8NHV4-2|NEDD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.2986450195312	2	548.242406	1094.47026	1.9574	0.0010731	3.2823	0.0017995	5.2397	0.0028726	548.2443837778984	82.239	1.0554	82.239	81.937	82.992	0					43	24	3	0	0	0	0.027461	1	8576	8576		19.104	0	1	570510			4824	4768	3795	3804	6083	6083					-0.073196744304596
DMGLWRMQVF	10	Unmodified	_DMGLWRMQVF_					0	0	0		ENSG00000154262|ENST00000284425|ABCA6;ENST00000589803.5_1_17:67102167-67114054:-|nuORF;ENST00000590311.5_1_17:67101582-67103939:-|nuORF	ENSG00000154262|ENST00000284425|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	MULTI-SECPEP	OvCa99_classI_Rep5	1	427.6884765625	3	428.207221	1281.59983	-0.56656	-0.00024261	1.1034	0.00047247	0.53681	0.00022986	428.2064312326001	44.384	0.26919	44.384	44.215	44.484	0					8	5	2	0	0	0	0.027142	1	3002	3002		20.837	0	1	78963			4825	5724	3796	3805	6084	6084					-0.0297019635218021
DMHDKHCKI	9	Unmodified	_DMHDKHCKI_					0	0	0			REV__ENSG00000134318|ENST00000315872|ROCK2	REV__ENSG00000134318|ENST00000315872|ROCK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.7920532226562	2	563.760243	1125.50593	1.1823	0.00066651	0.64631	0.00036436	1.8286	0.0010309	563.7604350544167	140.24	0.76053	140.24	140.02	140.78	0					36	15	4	0	0	0	0.027462	1	16423	16423		26.693	0	1	149470	+		4826	19194	3797	3806	6085	6085					-0.051799154544596604
DMIKLTYF	8	Unmodified	_DMIKLTYF_					0	0	0			REV__ENST00000296679.8_1_5:76729084-76732108:-|nuORF	REV__ENST00000296679.8_1_5:76729084-76732108:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.296875	2	515.767529	1029.5205	-0.75323	-0.00038849	0.63848	0.00032931	-0.11475	-5.9186E-05	515.767843384546	103.12	0.3448	102.44	102.28	102.62	-0.68459					9	6	2	0	0	0	0.028476	1	9515	9515		25.45	0.93098	1	7552.6	+		4827	24205	3798	3807	6086	6086					0.006924799653461378
DMILHETDQL	10	Unmodified	_DMILHETDQL_					0	0	0			REV__ENSG00000265203|ENST00000584701|RBP3	REV__ENSG00000265203|ENST00000584701|RBP3	MULTI-MSMS	OvCa99_classI_Rep5	1	607.7904052734375	2	607.789721	1213.56489	0.44917	0.000273	-3.0934	-0.0018801	-2.6442	-0.0016071	607.7875408709978	103.39	0.62976	103.39	103.18	103.81	0					33	14	4	0	0	0	0.37436	1	11570	11570		71.877	1.0613	1	934910	+		4828	23582	3799	3808	6087	6087					-0.03335160679125693
DMILHETDQL	10	Unmodified	_DMILHETDQL_					0	0	0			REV__ENSG00000265203|ENST00000584701|RBP3	REV__ENSG00000265203|ENST00000584701|RBP3	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	607.789721	1213.56489	0.44917	0.000273	-3.0934	-0.0018801	-2.6442	-0.0016071	607.7875408709978	103.39	0.62976	103.39	103.18	103.81	0	-0.011815	-0.00034415	NaN	71.877	33	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	934910	+		4829	23582	3799	3808							-0.03335160679125693
DMILHETDQL	10	Unmodified	_DMILHETDQL_					0	0	0			REV__ENSG00000265203|ENST00000584701|RBP3	REV__ENSG00000265203|ENST00000584701|RBP3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	607.789721	1213.56489	-1.1543	-0.00070156	0.92893	0.00056459	-0.22535	-0.00013697	608.2929374069295	104.02	0.14812	103.45	103.37	103.52	-0.57639	0.043243	0.0045453	NaN	71.877	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6361.6	+		4830	23582	3799	3808							-0.03335160679125693
DMILHETDQL	10	Unmodified	_DMILHETDQL_					0	0	0			REV__ENSG00000265203|ENST00000584701|RBP3	REV__ENSG00000265203|ENST00000584701|RBP3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	607.789721	1213.56489	0.37988	0.00023089	-4.9473	-0.0030069	-4.5674	-0.002776	608.2877640430002	105.39	0.34718	103.37	103.2	103.55	-2.0161	-0.031428	-0.0025977	NaN	71.877	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9763.9	+		4831	23582	3799	3808							-0.03335160679125693
DMILQKKL	8	Unmodified	_DMILQKKL_					0	0	0			REV__tr|A0A553SF60|A0A553SF60_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08285PE=4SV=1	REV__tr|A0A553SF60|A0A553SF60_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08285PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.79425048828125	2	494.79662	987.578688	0.49321	0.00024404	-4.2256	-0.0020908	-3.7324	-0.0018468	494.79446862304474	97.978	1.1109	95.6	95.166	96.277	-2.3786					54	21	4	0	0	0	0.65062	1	8712	8712		53.351	0	1	495090	+		4832	29538	3800	3809	6088	6088					0.08440161610621999
DMIVVLYSAL	10	Unmodified	_DMIVVLYSAL_					0	0	0			REV__tr|A0A7D7A181|A0A7D7A181_9CLOT[RibosomalproteinbS18]-alanineN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=rimIPE=3SV=1	REV__tr|A0A7D7A181|A0A7D7A181_9CLOT[RibosomalproteinbS18]-alanineN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=rimIPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3087158203125	2	562.307018	1122.59948	1.6081	0.00090426	1.0727	0.00060321	2.6809	0.0015075	562.3076275952775	112.77	1.839	111.26	110.53	112.37	-1.5111					103	36	5	0	0	0	0.52321	1	10486	10486		51.335	5.3835	1	1731000	+		4833	32477	3801	3810	6089	6089					0.0430870719962968
DMKCVRVTM	9	Oxidation (M)	_DMKCVRVTM(Oxidation (M))_		DMKCVRVTM(1)		DM(-34)KCVRVTM(34)	0	0	1			REV__ENST00000481947.1_1_16:105509-105883:+|nuORF	REV__ENST00000481947.1_1_16:105509-105883:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	549.7595825195312	2	549.758855	1097.50316	-0.96552	-0.0005308	1.6049	0.00088233	0.63942	0.00035153	549.7594015377424	26.368	0.35073	26.368	26.242	26.593	0					14	6	4	0	0	0	0.51865	1	684	684		40.778	7.9657	2	64804	+		4834	20714	3802	3811	6090	6090		483			-0.041695069036222776
DMKMECVISD	10	Unmodified	_DMKMECVISD_					0	0	0			REV__nc|ENSG00000084093|Q13127-4|REST	REV__nc|ENSG00000084093|Q13127-4|REST	MULTI-MSMS	OvCa9_classI_Rep4_	4	585.744873046875	2	585.74561	1169.47667	-0.75568	-0.00044264	-2.4136	-0.0014138	-3.1693	-0.0018564	585.7440711702211	101.93	1.5158	99.735	99.421	100.94	-2.1994					65	28	3	0	0	0	0.58067	1	9166	9166		44.377	3.599	1	474650	+		4835	17119	3803	3812	6091	6091					-0.10129240585592925
DMKNYKKRVET	11	Unmodified	_DMKNYKKRVET_					0	0	0			REV__tr|A0A7D6ZGH3|A0A7D6ZGH3_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_18625PE=4SV=1	REV__tr|A0A7D6ZGH3|A0A7D6ZGH3_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_18625PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.290283203125	3	471.250254	1410.72893	0.10584	4.9878E-05	-0.41679	-0.00019641	-0.31095	-0.00014653	471.25017668914717	33.08	0.48619	33.08	32.7	33.186	0					13	9	3	0	0	0	0.026174	1	1470	1470		22.562	12.458	1	48882	+		4836	31999	3804	3813	6092	6092					0.03999856811628888
DMKQLFILL	9	Unmodified	_DMKQLFILL_					0	0	0			REV__ENSG00000136021|ENST00000360820|SCYL2	REV__ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	OvCa99_classI_Rep5	1	560.8289794921875	2	560.825378	1119.6362	-0.017605	-9.8733E-06	2.5014	0.0014029	2.4838	0.001393	560.826858568463	70.307	3.5219	70.307	69.513	73.035	0					204	87	3	0	0	0	0.50149	1	6842	6842		42.396	5.237	1	81756000	+		4837	19351	3805	3814	6093	6093					0.08117003816209944
DMKTAKLKL	9	Unmodified	_DMKTAKLKL_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-MSMS	OvCa9_classI_Rep2	2	524.3154296875	2	524.315177	1046.6158	-0.54782	-0.00028723	-1.4181	-0.00074351	-1.9659	-0.0010307	524.3144059068588	121.52	1.6813	121.32	120.8	122.48	-0.19718					79	33	4	0	0	0	0.38969	1	11802	11802		52.937	0	1	278140			4838	9229	3806	3815	6094	6094					0.09435833156385343
DMKVLKMSQSI	11	Unmodified	_DMKVLKMSQSI_					0	0	0		MYO6|p.R980Tfs*5|1|0.29|ENSG00000196586|chr6:75891292-75891293|-/A|frameshift_variant;nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6	MYO6|p.R980Tfs*5|1|0.29|ENSG00000196586|chr6:75891292-75891293|-/A|frameshift_variant	MYO6|p.R980Tfs*5|1|0.29|ENSG00000196586|chr6:75891292-75891293|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	640.3411254882812	2	640.341066	1278.66758	-0.074961	-4.8E-05	0.072876	4.6666E-05	-0.0020845	-1.3348E-06	640.3411241833008	52.277	2.1733	49.069	48.742	50.915	-3.208					129	42	5	0	0	0	0.50203	1	3121	3121		29.17	0	1	2332400			4839	8630	3807	3816	6095	6095					0.03939208788005999
DMLAFILI	8	Unmodified	_DMLAFILI_					0	0	0		ENST00000392541.3_1_2:176042948-176043026:-|nuORF	ENST00000392541.3_1_2:176042948-176043026:-|nuORF	ENST00000392541.3_1_2:176042948-176043026:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	468.27020263671875	2	468.267164	934.519776	0.66352	0.0003107	1.7401	0.00081483	2.4036	0.0011255	468.2685558729289	68.381	2.543	64.891	64.333	66.876	-3.4902					125	51	5	0	0	0	0.67106	1	5062	5062		49.211	1.5535	1	649160			4840	11228	3808	3817	6096	6096					0.04989685316320447
DMLEGLEKL	9	Unmodified	_DMLEGLEKL_					0	0	0		nc|ENSG00000164342|O15455-2|TLR3;TLR3|p.S776Lfs*19|1|0.24|ENSG00000164342|chr4:186084011-186084012|-/C|frameshift_variant;ENSG00000164342|ENST00000296795|TLR3	nc|ENSG00000164342|O15455-2|TLR3	nc|ENSG00000164342|O15455-2|TLR3	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.3057861328125	2	524.273175	1046.5318	-1.0771	-0.00056471	-2.9112	-0.0015262	-3.9883	-0.002091	524.2717408478093	53.376	0.4777	53.376	53.214	53.692	0					20	10	3	0	0	0	0.027441	1	4246	4246		58.782	11.125	1	182230			4841	6450	3809	3818	6097	6097					0.01039257268826077
DMLELFATL	9	Unmodified	_DMLELFATL_					0	0	0			REV__nc|ENSG00000062598|Q96JJ3-3|ELMO2	REV__nc|ENSG00000062598|Q96JJ3-3|ELMO2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.8547973632812	2	526.770268	1051.52598	-0.13696	-7.2145E-05	-3.2173	-0.0016948	-3.3543	-0.0017669	526.7684714198699	128.6	1.3888	127.14	126.9	128.29	-1.4565					55	27	3	0	0	0	0.027462	1	12280	12280		35.618	11.114	1	125840	+		4842	16753	3810	3819	6098	6098					0.0022815875715878065
DMLELFATL	9	Unmodified	_DMLELFATL_					0	0	0			REV__nc|ENSG00000062598|Q96JJ3-3|ELMO2	REV__nc|ENSG00000062598|Q96JJ3-3|ELMO2	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	526.770268	1051.52598	0.77221	0.00040678	-4.0914	-0.0021552	-3.3192	-0.0017484	526.7680645869403	127.54	1.1845	127.31	126.94	128.12	-0.2359	0.069508	-0.00034037	NaN	34.173	50	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208180	+		4843	16753	3810	3819							0.0022815875715878065
DMLKEPISH	9	Unmodified	_DMLKEPISH_					0	0	0			REV__ENSG00000136147|ENST00000378319|PHF11	REV__ENSG00000136147|ENST00000378319|PHF11	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.2597045898438	2	535.270967	1068.52738	-0.078539	-4.204E-05	-2.1713	-0.0011623	-2.2499	-0.0012043	535.2703096419029	87.162	1.3237	84.985	84.33	85.654	-2.1768					34	25	2	0	0	0	0.027462	1	5156	5156		44.117	0	1	39738	+		4844	19361	3811	3820	6099	6099					-0.004142071540854886
DMLLRIKL	8	Oxidation (M)	_DM(Oxidation (M))LLRIKL_		DM(1)LLRIKL		DM(79)LLRIKL	0	0	1			REV__ENST00000556216.5_1_14:54996956-54997016:+|nuORF	REV__ENST00000556216.5_1_14:54996956-54997016:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.3238830566406	2	509.309895	1016.60524	1.7144	0.00087316	0.3933	0.00020031	2.1077	0.0010735	509.3096882838872	129.79	0.14314	129.79	129.72	129.87	0					4	2	2	0	0	0	0.028476	1	15063	15063		79.451	31.535	1	70872	+		4845	27555	3812	3821	6100	6100		611			0.09759850501973233
DMLPSFTVL	9	Unmodified	_DMLPSFTVL_					0	0	0			REV__ENSG00000106263|ENST00000360876|EIF3B	REV__ENSG00000106263|ENST00000360876|EIF3B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.8479919433594	2	511.764986	1021.51542	1.2028	0.00061555	3.1496	0.0016119	4.3524	0.0022274	511.7662495165104	85.798	0.6946	83.151	82.848	83.543	-2.6463					28	13	3	0	0	0	0.027441	1	7198	7198		65.803	18.146	1	77792	+		4846	17785	3813	3822	6101	6101					0.005521761027239336
DMLPSFTVL	9	Unmodified	_DMLPSFTVL_					0	0	0			REV__ENSG00000106263|ENST00000360876|EIF3B	REV__ENSG00000106263|ENST00000360876|EIF3B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	511.764986	1021.51542	-1.3131	-0.000672	5.4051	0.0027661	4.092	0.0020941	511.7676104254306	84.7	1.0062	83.153	82.64	83.647	-1.5462	0.05265	0.00047722	NaN	65.803	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35522	+		4847	17785	3813	3822							0.005521761027239336
DMLQIEFKC	9	Unmodified	_DMLQIEFKC_					0	0	0		ENSG00000112619|ENST00000230381|PRPH2	ENSG00000112619|ENST00000230381|PRPH2	ENSG00000112619|ENST00000230381|PRPH2	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.8099975585938	2	563.767203	1125.51985	1.6898	0.00095268	0.53175	0.00029978	2.2216	0.0012525	563.7672825859024	111.45	0.77019	111.45	111.16	111.93	0					30	16	3	0	0	0	0.027462	1	12640	12640		47.657	31.184	1	365040			4848	2914	3814	3823	6102	6102					-0.037886827460170025
DMLSLWQR	8	Unmodified	_DMLSLWQR_					0	0	0		ENST00000471219.1_1_1:32100449-32100937:-|nuORF	ENST00000471219.1_1_1:32100449-32100937:-|nuORF	ENST00000471219.1_1_1:32100449-32100937:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	524.765625	2	524.765852	1047.51715	0.20193	0.00010597	0.020811	1.0921E-05	0.22274	0.00011689	524.7656821211727	129.4	1.9283	128.29	127.55	129.48	-1.1121					82	38	4	0	0	0	0.70469	1	10238	10238		42.396	0	1	121170			4849	12377	3815	3824	6103	6103					-0.004707700886683597
DMLTYIITF	9	Unmodified	_DMLTYIITF_					0	0	0			REV__nc|ENSG00000293504|Q99463|NPY6R	REV__nc|ENSG00000293504|Q99463|NPY6R	MSMS	OvCa99_classI_Rep5	1	558.7861328125	2	558.785918	1115.55728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.76	1	148.76	148.26	149.26	0								0	0	0	0.16872	1	17412	17412		54.776	1.4249	1		+		4850	29225	3816	3825	6104	6104					0.0041273179124345916
DMMGYCPW	8	Unmodified	_DMMGYCPW_					0	0	0		tr|A0A7D6ZIF5|A0A7D6ZIF5_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03990PE=3SV=1	tr|A0A7D6ZIF5|A0A7D6ZIF5_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03990PE=3SV=1	tr|A0A7D6ZIF5|A0A7D6ZIF5_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03990PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	501.6795349121094	2	501.679542	1001.34453	1.5224	0.00076373	-2.9699	-0.0014899	-1.4475	-0.00072619	501.6779499877554	122.84	0.6013	122.84	122.63	123.23	0					19	12	2	0	0	0	0.67106	1	14159	14159		49.211	12.052	1	99790			4851	35612	3817	3826	6105	6105					-0.15608800811889978
DMMNITLGII	10	Unmodified	_DMMNITLGII_					0	0	0		tr|A0A553SSE4|A0A553SSE4_NIACICytochromeP450OS=NialliacirculansOX=1397GN=CEQ21_02955PE=3SV=1	tr|A0A553SSE4|A0A553SSE4_NIACICytochromeP450OS=NialliacirculansOX=1397GN=CEQ21_02955PE=3SV=1	tr|A0A553SSE4|A0A553SSE4_NIACICytochromeP450OS=NialliacirculansOX=1397GN=CEQ21_02955PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.766845703125	2	560.790678	1119.5668	0.49777	0.00027914	-1.4555	-0.00081626	-0.95778	-0.00053712	560.7893697541658	60.667	0.98169	60.667	60.434	61.416	0					23	22	2	0	0	0	0.026659	1	5401	5401		45.972	24.012	1	601750			4852	34365	3818	3827	6106	6106					0.011801768051327599
DMNLGIFVLE	10	Unmodified	_DMNLGIFVLE_					0	0	0			REV__tr|A0A553SPP1|A0A553SPP1_NIACIGTP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_26805PE=3SV=1	REV__tr|A0A553SPP1|A0A553SPP1_NIACIGTP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_26805PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	575.8177490234375	2	575.794275	1149.574	-0.070796	-4.0764E-05	-3.848	-0.0022157	-3.9188	-0.0022564	575.794417635981	92.175	1.4514	90.94	90.484	91.936	-1.2355					90	27	6	0	0	0	0.026553	1	8183	8183		47.657	0	1	64890	+		4853	30556	3819	3828	6107	6107					0.005192326771975786
DMPLHFQA	8	Unmodified	_DMPLHFQA_					0	0	0			REV__nc|ENSG00000197893|Q86VF7-4|NRAP	REV__nc|ENSG00000197893|Q86VF7-4|NRAP	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.21697998046875	2	479.726195	957.437837	-0.71953	-0.00034518	-3.0461	-0.0014613	-3.7657	-0.0018065	479.7245256099266	34.888	1.6762	34.888	34.398	36.074	0					49	35	2	0	0	0	0.028476	1	1765	1765		26.796	0	1	64179	+		4854	22964	3820	3829	6108	6108					-0.042584170427858226
DMPRFVLGH	9	Unmodified	_DMPRFVLGH_					0	0	0			REV__ENST00000462680.5_1_1:153955646-153957199:-|nuORF	REV__ENST00000462680.5_1_1:153955646-153957199:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.8327026367188	2	536.273844	1070.53313	-1.7051	-0.00091442	2.8461	0.0015263	1.1409	0.00061184	536.7772379801035	118.08	0.57857	116.74	116.42	117	-1.3444					14	10	2	0	0	0	0.027448	1	11076	11076		35.618	0	1	24488	+		4855	26115	3821	3830	6109	6109					0.0006893614825003169
DMQDYMPTL	9	Unmodified	_DMQDYMPTL_					0	0	0		tr|A0A7D7AGL9|A0A7D7AGL9_9CLOTPhosphoribosylformylglycinamidinesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09215PE=4SV=1	tr|A0A7D7AGL9|A0A7D7AGL9_9CLOTPhosphoribosylformylglycinamidinesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09215PE=4SV=1	tr|A0A7D7AGL9|A0A7D7AGL9_9CLOTPhosphoribosylformylglycinamidinesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09215PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	557.2332153320312	2	557.233193	1112.45183	1.8776	0.0010463	-2.9784	-0.0016597	-1.1008	-0.00061339	557.2318777444804	148.3	0.39444	148.3	148.13	148.52	0					18	7	3	0	0	0	0.55588	1	17360	17360		37.159	5.2042	1	99824			4856	36266	3822	3831	6110	6110					-0.09989552396677936
DMQGSHQLLV	10	Unmodified	_DMQGSHQLLV_					0	0	0		nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF	nc|ENSG00000073350|Q6P1M3-2|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.3259887695312	2	564.279323	1126.54409	0.91421	0.00051587	4.0408	0.0022801	4.955	0.002796	564.2815951864721	103.13	2.0423	100.93	100.2	102.24	-2.1994					53	38	2	0	0	0	0.026464	1	9354	9354		69.628	10.846	1	74605			4857	1492	3823	3832	6111	6111					-0.01411706268117996
DMQVLNEGF	9	Unmodified	_DMQVLNEGF_					0	0	0			REV__ENST00000167106.8_2_14:77245571-77245688:+|nuORF	REV__ENST00000167106.8_2_14:77245571-77245688:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.2787475585938	2	526.739499	1051.46445	-0.71775	-0.00037807	4.3966	0.0023158	3.6788	0.0019378	526.7413780242398	44.632	0.3098	44.632	44.44	44.75	0					11	6	2	0	0	0	0.027462	1	3007	3007		14.865	3.9993	1	128480	+		4858	23683	3824	3833	6112	6112					-0.059227729421081676
DMREKLSMV	9	Unmodified	_DMREKLSMV_					0	0	0			REV__ENSG00000137501|ENST00000359152|SYTL2	REV__ENSG00000137501|ENST00000359152|SYTL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.8153076171875	2	554.778102	1107.54165	-0.42241	-0.00023435	-3.1072	-0.0017238	-3.5296	-0.0019581	554.7765955350378	59.859	0.1524	59.859	59.766	59.918	0					6	3	2	0	0	0	0.027462	1	5177	5177		27.882	0	1	606140	+		4859	19458	3825	3834	6113	6113					-0.007818779974286372
DMRILTIL	8	Unmodified	_DMRILTIL_					0	0	0			REV__ENSG00000172154|ENST00000302124|OR8I2	REV__ENSG00000172154|ENST00000302124|OR8I2	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.7900695800781	2	487.788795	973.563038	3.5562	0.0017347	-0.73408	-0.00035808	2.8221	0.0013766	487.7882512057077	132.82	4.8462	131.32	130.38	135.22	-1.5015					236	97	4	0	0	0	0.68714	1	12861	12861		45.952	3.5558	1	143240	+		4860	21676	3826	3835	6114	6114					0.0751987509358969
DMRQPDNV	8	Unmodified	_DMRQPDNV_					0	0	0			REV__nc|ENSG00000143457|Q9H4A5-2|GOLPH3L	REV__nc|ENSG00000143457|Q9H4A5-2|GOLPH3L	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.7276611328125	2	487.721641	973.428729	-0.046505	-2.2682E-05	1.2742	0.00062147	1.2277	0.00059879	487.7214657791473	70.913	0.30679	70.913	70.761	71.068	0					11	7	2	0	0	0	0.028476	1	6821	6821		24.203	0	1	154130	+		4861	19841	3827	3836	6115	6115					-0.059048103991244716
DMRVFTVVPN	10	Unmodified	_DMRVFTVVPN_					0	0	0		ENST00000539395.1_1_11:71823180-71823291:-|nuORF	ENST00000539395.1_1_11:71823180-71823291:-|nuORF	ENST00000539395.1_1_11:71823180-71823291:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3057250976562	2	589.305341	1176.59613	-0.88068	-0.00051899	1.2728	0.00075008	0.39213	0.00023108	589.3059650893875	121.84	1.1381	121.64	121.3	122.43	-0.19719					63	22	4	0	0	0	0.5635	1	11797	11797		46.457	12.284	1	115590			4862	13436	3828	3837	6116	6116					0.014894571456579797
DMSIISHVA	9	Unmodified	_DMSIISHVA_					0	0	0		tr|A0A7D6VQZ7|A0A7D6VQZ7_9CLOTFerrousirontransportproteinBOS=ClostridiumintestinaleOX=36845GN=feoBPE=3SV=1	tr|A0A7D6VQZ7|A0A7D6VQZ7_9CLOTFerrousirontransportproteinBOS=ClostridiumintestinaleOX=36845GN=feoBPE=3SV=1	tr|A0A7D6VQZ7|A0A7D6VQZ7_9CLOTFerrousirontransportproteinBOS=ClostridiumintestinaleOX=36845GN=feoBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.7637023925781	2	486.744585	971.474617	-0.087326	-4.2505E-05	1.7641	0.00085868	1.6768	0.00081617	486.7453819186317	62.355	1.0185	58.898	58.29	59.309	-3.4577					28	20	2	0	0	0	0.027456	1	4347	4347		30.504	0	1	45422			4863	34883	3829	3838	6117	6117					-0.01226165216883146
DMSSNRQRY	9	Unmodified	_DMSSNRQRY_					0	0	0			REV__ENSG00000150764|ENST00000440460|DIXDC1	REV__ENSG00000150764|ENST00000440460|DIXDC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	579.2796020507812	2	578.761829	1155.5091	-1.9141	-0.0011078	-1.3745	-0.00079551	-3.2886	-0.0019033	579.2626672751061	87.631	0.6046	85.004	84.698	85.303	-2.6269					16	11	2	0	0	0	0.027462	1	7479	7479		49.442	3.4693	1	12767	+		4864	20203	3830	3839	6118	6118					-0.062429490760678163
DMSSNRQRY	9	Unmodified	_DMSSNRQRY_					0	0	0			REV__ENSG00000150764|ENST00000440460|DIXDC1	REV__ENSG00000150764|ENST00000440460|DIXDC1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	578.761829	1155.5091	-0.64252	-0.00037187	-3.0879	-0.0017871	-3.7304	-0.002159	579.2614157258881	86.516	0.52976	85.025	84.692	85.222	-1.4906	0.010256	-0.0005611	NaN	49.442	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8410.2	+		4865	20203	3830	3839							-0.062429490760678163
DMTDLTKEL	9	Unmodified	_DMTDLTKEL_					0	0	0		nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1;PLXND1|p.E1457*|1|0.09|ENSG00000004399|chr3:129565492-129565493|-/A|frameshift_variant	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.31591796875	2	533.260265	1064.50598	1.4836	0.00079117	2.768	0.0014761	4.2517	0.0022672	533.2622420431786	112.04	0.78104	112.04	111.56	112.34	0					28	16	3	0	0	0	0.027462	1	12708	12708		20.947	1.8434	1	219030			4866	825	3831	3840	6119	6119					-0.023696369734580003
DMTFFSSV	8	Unmodified	_DMTFFSSV_					0	0	0		ENSG00000133138|ENST00000357242|TBC1D8B	ENSG00000133138|ENST00000357242|TBC1D8B	ENSG00000133138|ENST00000357242|TBC1D8B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.2381286621094	2	467.204761	932.394969	-0.92925	-0.00043415	1.8008	0.00084136	0.87158	0.00040721	467.20440971217647	43.871	0.70058	40.864	40.589	41.289	-3.0074					30	13	3	0	0	0	0.028476	1	2177	2177		33.516	0	1	23477			4867	4209	3832	3841	6120	6120					-0.07393231890875995
DMTRLMPPE	9	Unmodified	_DMTRLMPPE_					0	0	0			REV__ENST00000480825.6_1_1:36937516-36938309:-|nuORF	REV__ENST00000480825.6_1_1:36937516-36938309:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.3214111328125	2	545.257002	1088.49945	0.2058	0.00011221	-1.1448	-0.0006242	-0.93898	-0.00051199	545.2562449923979	46.132	0.52184	46.132	45.934	46.456	0					22	11	3	0	0	0	0.027462	1	3227	3227		47.657	22.531	1	623000	+		4868	16242	3833	3842	6121	6121					-0.041258534058215446
DMTRLMPPE	9	Unmodified	_DMTRLMPPE_					0	0	0			REV__ENST00000480825.6_1_1:36937516-36938309:-|nuORF	REV__ENST00000480825.6_1_1:36937516-36938309:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	545.257002	1088.49945	-2.1635	-0.0011797	-4.604	-0.0025104	-6.7675	-0.00369	545.2543604855401	49.052	0.83076	45.911	45.728	46.558	-3.1416	-0.11051	-0.0023475	NaN	56.721	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72942	+		4869	16242	3833	3842							-0.041258534058215446
DMVLSQIFL	9	Unmodified	_DMVLSQIFL_					0	0	0		ENST00000261778.1_1_16:69118402-69118879:+|nuORF	ENST00000261778.1_1_16:69118402-69118879:+|nuORF	ENST00000261778.1_1_16:69118402-69118879:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	533.2877197265625	2	533.286085	1064.55762	1.2598	0.00067186	-2.2101	-0.0011786	-0.95029	-0.00050678	533.2847782668564	144.38	1.2136	144.38	144.06	145.27	0					48	24	3	0	0	0	0.27001	1	16868	16868		66.429	5.4573	1	426120			4870	9872	3834	3843	6122	6122					0.02792151511107477
DMVRHRIK	8	Unmodified	_DMVRHRIK_					0	0	0		sp|P13202|VIE1_HCMVAImmediateearlyproteinIE1OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL123PE=1SV=1;sp|F5HCM1|VIE1_HCMVMImmediateearlyproteinIE1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL123PE=3SV=1	sp|P13202|VIE1_HCMVAImmediateearlyproteinIE1OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL123PE=1SV=1	sp|P13202|VIE1_HCMVAImmediateearlyproteinIE1OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL123PE=1SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.2823486328125	2	527.80056	1053.58657	0.27096	0.00014301	-3.9594	-0.0020898	-3.6884	-0.0019468	527.798452998966	37.109	0.49883	34.216	33.943	34.442	-2.8925					17	9	3	0	0	0	0.028476	1	1330	1330		24.203	0	1	75308			4871	32857	3835	3844	6123	6123					0.06191733650757669
DMVSIIDIL	9	Unmodified	_DMVSIIDIL_					0	0	0		tr|A0A7D6VSH1|A0A7D6VSH1_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16495PE=4SV=1	tr|A0A7D6VSH1|A0A7D6VSH1_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16495PE=4SV=1	tr|A0A7D6VSH1|A0A7D6VSH1_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16495PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	509.7814025878906	2	509.778093	1017.54163	2.6362	0.0013439	2.7727	0.0014135	5.4089	0.0027573	509.77939907974684	75.283	0.55484	75.283	75.046	75.601	0					23	13	2	0	0	0	0.29717	1	7490	7490		63.306	6.8725	1	1494000			4872	35024	3836	3845	6124	6124					0.03356445274221187
DMVSIIDIL	9	Unmodified	_DMVSIIDIL_					0	0	0		tr|A0A7D6VSH1|A0A7D6VSH1_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16495PE=4SV=1	tr|A0A7D6VSH1|A0A7D6VSH1_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16495PE=4SV=1	tr|A0A7D6VSH1|A0A7D6VSH1_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16495PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	509.778093	1017.54163	-0.22651	-0.00011547	7.4833	0.0038148	7.2568	0.0036994	509.7816604784163	78.136	0.58154	75.32	75.067	75.649	-2.8165	0.018221	0.0030337	NaN	63.306	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	248350			4873	35024	3836	3845							0.03356445274221187
DMWEPHIIRWL	11	Unmodified	_DMWEPHIIRWL_					0	0	0		ENST00000494870.5_1_X:2838537-2847316:-|nuORF	ENST00000494870.5_1_X:2838537-2847316:-|nuORF	ENST00000494870.5_1_X:2838537-2847316:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.9443054199219	3	499.25534	1494.74419	-1.0278	-0.00051312	1.6246	0.00081108	0.59681	0.00029796	499.25593281310694	81.039	0.24526	78.329	78.199	78.445	-2.7106					6	4	2	0	0	0	0.026145	1	6644	6644		17.833	0	1	20134			4874	12763	3837	3846	6125	6125					0.016607683994607214
DMYGEKYK	8	Unmodified	_DMYGEKYK_					0	0	0		ENSG00000185009|ENST00000355264|AP3M1;AP3M2|p.L392V|1|0.12|ENSG00000070718|chr8:42168978-42168978|C/G|missense_variant;ENST00000522606.5_3_8:42025727-42026576:+|nuORF;ENSG00000070718|ENST00000396926|AP3M2	ENSG00000185009|ENST00000355264|AP3M1;ENSG00000070718|ENST00000396926|AP3M2	ENSG00000185009|ENST00000355264|AP3M1	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.2392578125	2	517.236593	1032.45863	-0.38989	-0.00020166	2.6294	0.00136	2.2396	0.0011584	517.2382419031586	47.362	3.6491	44.289	43.552	47.201	-3.0724					185	70	5	0	0	0	0.53252	1	2530	2530		74.255	8.7897	1	1023700			4875	8211;1431	3838	3847	6126	6126					-0.056298714538115746
DMYNDDLI	8	Unmodified	_DMYNDDLI_					0	0	0		ENSG00000107282|ENST00000265381|APBA1;nc|ENSG00000107282|Q02410-2|APBA1	ENSG00000107282|ENST00000265381|APBA1	ENSG00000107282|ENST00000265381|APBA1	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.7718811035156	2	499.710408	997.406262	-1.2797	-0.00063948	2.2986	0.0011487	1.019	0.00050918	500.21257267757716	101.39	0.6313	99.787	99.603	100.23	-1.6053					16	11	2	0	0	0	0.028476	1	6971	6971		17.365	0	1	13738			4876	2598	3839	3848	6127	6127					-0.09254454587403416
DMYPLVLGF	9	Unmodified	_DMYPLVLGF_					0	0	0		NOLC1|p.L14M|1|0.27|ENSG00000166197|chr10:102152450-102152450|C/A|missense_variant	NOLC1|p.L14M|1|0.27|ENSG00000166197|chr10:102152450-102152450|C/A|missense_variant	NOLC1|p.L14M|1|0.27|ENSG00000166197|chr10:102152450-102152450|C/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.2823486328125	2	527.767529	1053.5205	0.23059	0.0001217	-0.58405	-0.00030824	-0.35346	-0.00018655	527.7670971910525	37.147	0.99798	34.254	33.993	34.991	-2.8925					48	19	4	0	0	0	0.027462	1	1330	1330		7.6903	0	1	195050			4877	15434	3840	3849	6128	6128					-0.004115200346632264
DNAIKKLLL	9	Unmodified	_DNAIKKLLL_					0	0	0		tr|A0A553SLV2|A0A553SLV2_NIACISerine/threonineproteinkinaseOS=NialliacirculansOX=1397GN=CEQ21_21330PE=3SV=1	tr|A0A553SLV2|A0A553SLV2_NIACISerine/threonineproteinkinaseOS=NialliacirculansOX=1397GN=CEQ21_21330PE=3SV=1	tr|A0A553SLV2|A0A553SLV2_NIACISerine/threonineproteinkinaseOS=NialliacirculansOX=1397GN=CEQ21_21330PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	514.81689453125	2	514.329142	1026.64373	-0.9621	-0.00049483	-0.47901	-0.00024637	-1.4411	-0.00074121	514.3290344969034	117.1	0.4448	116.98	116.82	117.26	-0.12869					13	8	2	0	0	0	0.027462	1	11225	11225		24.519	0	1	13101			4878	33768	3841	3850	6129	6129					0.13147479408144136
DNAITEAKV	9	Unmodified	_DNAITEAKV_					0	0	0			REV__tr|A0A553SNU2|A0A553SNU2_NIACIPutativecompetence-damageinducibleproteinOS=NialliacirculansOX=1397GN=cinAPE=3SV=1	REV__tr|A0A553SNU2|A0A553SNU2_NIACIPutativecompetence-damageinducibleproteinOS=NialliacirculansOX=1397GN=cinAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.2732849121094	2	480.753464	959.492375	-0.78224	-0.00037606	0.74209	0.00035676	-0.040151	-1.9303E-05	480.7536440331839	49.757	0.69482	49.757	49.55	50.245	0					35	15	3	0	0	0	0.027417	1	3731	3731		51.528	0	1	2034200	+		4879	30454	3842	3851	6130	6130					0.011008733096218748
DNAWISLTL	9	Unmodified	_DNAWISLTL_					0	0	0			REV__KMT2A|p.P2471Lfs*35|1|0.08|ENSG00000118058|chr11:118503312-118503312|C/-|frameshift_variant	REV__KMT2A|p.P2471Lfs*35|1|0.08|ENSG00000118058|chr11:118503312-118503312|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	516.7708129882812	2	516.771657	1031.52876	-1.3543	-0.00069986	-4.4601	-0.0023049	-5.8144	-0.0030047	517.2702036573717	70.173	0.76278	70.173	69.84	70.603	0					46	18	6	0	0	0	0.11471	1	6716	6716		93.195	5.499	1	2942100	+		4880	28341	3843	3852	6131	6131					0.014257502063401262
DNAWISLTL	9	Unmodified	_DNAWISLTL_					0	0	0			REV__KMT2A|p.P2471Lfs*35|1|0.08|ENSG00000118058|chr11:118503312-118503312|C/-|frameshift_variant	REV__KMT2A|p.P2471Lfs*35|1|0.08|ENSG00000118058|chr11:118503312-118503312|C/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	516.771657	1031.52876	0.76618	0.00039594	-9.4449	-0.0048809	-8.6788	-0.0044849	516.7665024749022	72.406	0.54634	69.804	69.521	70.068	-2.6023	-0.18456	-0.003116	NaN	93.195	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18867	+		4881	28341	3843	3852							0.014257502063401262
DNDGAEDE	8	Unmodified	_DNDGAEDE_					0	0	0		nc|ENSG00000169760|Q8N2Q7|NLGN1	nc|ENSG00000169760|Q8N2Q7|NLGN1	nc|ENSG00000169760|Q8N2Q7|NLGN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	432.2124938964844	2	432.646319	863.278085	-0.0029082	-1.2582E-06	0.8049	0.00034824	0.80199	0.00034698	432.64663049147293	49.153	0.25937	49.153	48.986	49.245	0					8	5	2	0	0	0	0.028476	1	3641	3641		6.3127	0	1	92373			4882	15175	3844	3853	6132	6132					-0.15902298576929752
DNDKDYDN	8	Unmodified	_DNDKDYDN_					0	0	0			REV__ENST00000560833.1_1_15:77236155-77240950:+|nuORF	REV__ENST00000560833.1_1_15:77236155-77240950:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.2696228027344	2	499.688518	997.362483	-0.83672	-0.0004181	-0.47915	-0.00023943	-1.3159	-0.00065753	500.189868126966	103.79	0.4735	101.67	101.54	102.01	-2.1192					11	8	2	0	0	0	0.028476	1	9407	9407		51.335	27.133	1	11481	+		4883	15925	3845	3854	6133	6133					-0.13630347760181394
DNDKDYDN	8	Unmodified	_DNDKDYDN_					0	0	0			REV__ENST00000560833.1_1_15:77236155-77240950:+|nuORF	REV__ENST00000560833.1_1_15:77236155-77240950:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	499.688518	997.362483	-0.44907	-0.00022439	-1.6595	-0.00082926	-2.1086	-0.0010537	499.6877235438497	103.05	0.577	101.53	101.31	101.89	-1.5211	-0.071811	-0.00061958	NaN	34.173	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14847	+		4884	15925	3845	3854							-0.13630347760181394
DNEDKKSKN	9	Unmodified	_DNEDKKSKN_					0	0	0		ENST00000526955.1_1_11:125281302-125301285:+|nuORF;nc|ENSG00000165495|Q96KN3-2|PKNOX2;ENSG00000165495|ENST00000298282|PKNOX2	ENST00000526955.1_1_11:125281302-125301285:+|nuORF	ENST00000526955.1_1_11:125281302-125301285:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.3028564453125	2	539.262185	1076.50982	1.6186	0.00087285	-1.8626	-0.0010044	-0.24401	-0.00013159	539.2611301965852	78.8	0.66132	78.8	78.54	79.202	0					25	15	2	0	0	0	0.027462	1	7973	7973		32.812	11.865	1	397340			4885	6568	3846	3855	6134	6134					-0.025378311553595267
DNEILFDVK	9	Unmodified	_DNEILFDVK_					0	0	0			REV__ENSG00000006611|ENST00000005226|USH1C	REV__ENSG00000006611|ENST00000005226|USH1C	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.7799682617188	2	546.782222	1091.54989	3.705	0.0020258	-3.7762	-0.0020648	-0.07122	-3.8942E-05	546.7800033528225	131.81	1.3099	130.31	129.98	131.29	-1.5015					60	25	3	0	0	0	0.2422	1	12668	12668		69.628	4.1622	1	73348	+		4886	16420	3847	3856	6135	6135					0.007777155151643456
DNERPKYAR	9	Unmodified	_DNERPKYAR_					0	0	0			REV__nc|ENSG00000050327|Q12774-2|ARHGEF5	REV__nc|ENSG00000050327|Q12774-2|ARHGEF5	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.3823852539062	2	574.793986	1147.57342	1.0328	0.00059364	-2.1578	-0.0012403	-1.125	-0.00064665	574.7930347973296	143.43	0.595	143.43	143.22	143.81	0					29	11	3	0	0	0	0.027402	1	16778	16778		56.721	1.2168	1	135650	+		4887	16684	3848	3857	6136	6136					0.005535740723644267
DNERVGIIL	9	Unmodified	_DNERVGIIL_					0	0	0		tr|A0A7D6VSS0|A0A7D6VSS0_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10325PE=4SV=1	tr|A0A7D6VSS0|A0A7D6VSS0_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10325PE=4SV=1	tr|A0A7D6VSS0|A0A7D6VSS0_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10325PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.3119506835938	2	514.790381	1027.56621	-0.85547	-0.00044039	1.2224	0.0006293	0.36697	0.00018891	514.7908477762592	52.913	1.1077	49.705	49.602	50.71	-3.208					24	21	2	0	0	0	0.027462	1	3200	3200		45.952	9.5052	1	118630			4888	35052	3849	3858	6137	6137					0.053528414719721695
DNFSFLYT	8	Unmodified	_DNFSFLYT_					0	0	0			REV__tr|A0A7D6VT08|A0A7D6VT08_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14995PE=3SV=1	REV__tr|A0A7D6VT08|A0A7D6VT08_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14995PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.7570495605469	2	503.729458	1005.44436	-1.092	-0.00055008	-3.31	-0.0016673	-4.402	-0.0022174	503.7270600057994	52.978	0.80058	49.77	49.502	50.303	-3.208					25	15	2	0	0	0	0.028476	1	3235	3235		18.324	0	1	40269	+		4889	31563	3850	3859	6138	6138					-0.05814200610416265
DNIFYYGRKA	10	Unmodified	_DNIFYYGRKA_					0	0	0			REV__tr|A0A7D6ZHU6|A0A7D6ZHU6_9CLOTAlkalinephosphatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04320PE=4SV=1	REV__tr|A0A7D6ZHU6|A0A7D6ZHU6_9CLOTAlkalinephosphatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04320PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	623.271484375	2	623.814387	1245.61422	1.9212	0.0011985	-3.4945	-0.0021799	-1.5734	-0.00098148	623.8115972968133	85.772	0.36905	85.772	85.585	85.954	0					12	8	2	0	0	0	0.026782	1	8993	8993		30.318	0	1	439790	+		4890	32038	3851	3860	6139	6139					0.0012391539198688406
DNINIRRN	8	Unmodified	_DNINIRRN_					0	0	0		ENSG00000119778|ENST00000238789|ATAD2B;nc|ENSG00000119778|Q9ULI0-2|ATAD2B	ENSG00000119778|ENST00000238789|ATAD2B	ENSG00000119778|ENST00000238789|ATAD2B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.794189453125	2	507.775597	1013.53664	-1.4596	-0.00074115	-1.859	-0.00094397	-3.3186	-0.0016851	507.7760823593886	48.84	0.36384	45.732	45.502	45.866	-3.1077					7	6	2	0	0	0	0.028476	1	2696	2696		21.96	0	1	8544.1			4891	3395	3852	3861	6140	6140					0.030413222464630962
DNIPVTPQKC	10	Unmodified	_DNIPVTPQKC_					0	0	0		ENSG00000184226|ENST00000377865|PCDH9	ENSG00000184226|ENST00000377865|PCDH9	ENSG00000184226|ENST00000377865|PCDH9	MULTI-SECPEP	OvCa9_classI_Rep3	3	558.3323364257812	2	557.781699	1113.54884	-0.93188	-0.00051979	1.9073	0.0010638	0.97539	0.00054405	558.284751818866	89.783	0.41174	87.703	87.592	88.004	-2.0805					10	7	2	0	0	0	0.026681	1	5567	5567		36.447	0	1	14541			4892	8138	3853	3862	6141	6141					-0.0033882212535445433
DNIRILVV	8	Unmodified	_DNIRILVV_					0	0	0			REV__ENSG00000079112|ENST00000027335|CDH17	REV__ENSG00000079112|ENST00000027335|CDH17	MULTI-MSMS	OvCa9_classI_Rep3	3	471.2932434082031	2	471.292559	940.570566	-0.27751	-0.00013079	0.10562	4.9779E-05	-0.17189	-8.101E-05	471.2925260681946	81.937	1.3959	79.64	79.284	80.68	-2.2963					82	27	4	0	0	0	0.70469	1	4605	4605		42.396	0	1	1242100	+		4893	17033	3854	3863	6142	6142					0.09790350685523208
DNIWDILVKM	10	Unmodified	_DNIWDILVKM_					0	0	0			REV__ENSG00000197702|ENST00000334956|PARVA	REV__ENSG00000197702|ENST00000334956|PARVA	MULTI-SECPEP	OvCa99_classI_Rep5	1	623.271484375	2	623.828649	1245.64274	1.8872	0.0011773	-4.1883	-0.0026128	-2.3011	-0.0014355	623.8264583400681	85.659	0.24761	85.659	85.502	85.75	0					8	5	2	0	0	0	0.026714	1	8993	8993		42.864	8.6917	1	117550	+		4894	22943	3855	3864	6143	6143					0.02974896976911623
DNKASGTAKVL	11	Unmodified	_DNKASGTAKVL_					0	0	0		tr|A0A7D6VPI0|A0A7D6VPI0_9CLOTFlagellarbasalbodyrodproteinFlgBOS=ClostridiumintestinaleOX=36845GN=flgBPE=3SV=1	tr|A0A7D6VPI0|A0A7D6VPI0_9CLOTFlagellarbasalbodyrodproteinFlgBOS=ClostridiumintestinaleOX=36845GN=flgBPE=3SV=1	tr|A0A7D6VPI0|A0A7D6VPI0_9CLOTFlagellarbasalbodyrodproteinFlgBOS=ClostridiumintestinaleOX=36845GN=flgBPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	552.3060913085938	2	552.306395	1102.59824	-0.93908	-0.00051866	0.62457	0.00034495	-0.31451	-0.00017371	552.3067358415858	26.712	0.75035	26.712	26.292	27.043	0					38	14	4	0	0	0	0.62561	1	718	718		42.338	7.1861	1	304790			4895	34771	3856	3865	6144	6144					0.05104209155092576
DNKFTEEKL	9	Unmodified	_DNKFTEEKL_					0	0	0			REV__nc|ENSG00000151320|Q13023-2|AKAP6;REV__ENSG00000151320|ENST00000280979|AKAP6	REV__ENSG00000151320|ENST00000280979|AKAP6	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.732177734375	2	562.285128	1122.5557	1.8712	0.0010522	0.1545	8.6875E-05	2.0257	0.001139	562.2851007977634	80.881	0.58863	80.881	80.659	81.248	0					29	12	4	0	0	0	0.027462	1	8351	8351		32.812	0	1	1632500	+		4896	15586;28925	3857	3866	6145	6145					-0.0006718597314829822
DNKIGKAVK	9	Unmodified	_DNKIGKAVK_					0	0	0			REV__tr|A0A7D6VU96|A0A7D6VU96_9CLOTVIT1/CCC1transporterfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01195PE=4SV=1	REV__tr|A0A7D6VU96|A0A7D6VU96_9CLOTVIT1/CCC1transporterfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01195PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.7801818847656	2	486.795466	971.57638	-0.62328	-0.00030341	-1.06	-0.00051602	-1.6833	-0.00081943	486.794839632061	92.071	0.76346	89.528	89.262	90.026	-2.5425					25	14	2	0	0	0	0.027453	1	7962	7962		37.812	3.639	1	22083	+		4897	31661	3858	3867	6146	6146					0.08945449197176458
DNKIVPIIL	9	Unmodified	_DNKIVPIIL_					0	0	0			REV__tr|A0A7D6VPX4|A0A7D6VPX4_9CLOTGAFdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20685PE=4SV=1	REV__tr|A0A7D6VPX4|A0A7D6VPX4_9CLOTGAFdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20685PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	512.7866821289062	2	512.823692	1023.63283	0.10609	5.4407E-05	-0.38673	-0.00019832	-0.28064	-0.00014392	512.8235587199048	108.98	0.4725	107.78	107.61	108.09	-1.1978					12	8	2	0	0	0	0.027462	1	7801	7801		44.117	26.752	1	12369	+		4898	31285	3859	3868	6147	6147					0.12196077033843267
DNKNKTNN	8	Unmodified	_DNKNKTNN_					0	0	0			REV__nc|ENSG00000157077|O95405-3|ZFYVE9	REV__nc|ENSG00000157077|O95405-3|ZFYVE9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.28472900390625	2	474.230687	946.446822	0.77844	0.00036916	0.14942	7.0858E-05	0.92786	0.00044002	474.2273603848341	89.332	0.53959	86.729	86.483	87.023	-2.6027					20	10	3	0	0	0	0.028476	1	7635	7635		35.618	0	1	18058	+		4899	20510	3860	3869	6148	6148					-0.028543521527581106
DNKNLELY	8	Unmodified	_DNKNLELY_					0	0	0			REV__tr|A0A7D6VTY3|A0A7D6VTY3_9CLOTLonproteaseOS=ClostridiumintestinaleOX=36845GN=lonPE=2SV=1	REV__tr|A0A7D6VTY3|A0A7D6VTY3_9CLOTLonproteaseOS=ClostridiumintestinaleOX=36845GN=lonPE=2SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.75921630859375	2	504.753464	1007.49238	-1.3221	-0.00066731	-0.011505	-5.8072E-06	-1.3336	-0.00067312	504.75264286711626	54.2	0.81839	50.953	50.364	51.183	-3.2474					24	15	2	0	0	0	0.028476	1	3284	3284		35.618	10.168	1	30662	+		4900	31638	3861	3870	6149	6149					-0.011071266903854848
DNKSVAKQPLT	11	Unmodified	_DNKSVAKQPLT_					0	0	0			REV__ENST00000359742.8_2_12:67072667-67072775:-|nuORF	REV__ENST00000359742.8_2_12:67072667-67072775:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	600.8514404296875	2	600.832777	1199.651	1.0237	0.00061509	-2.3333	-0.0014019	-1.3096	-0.00078685	600.8311951031781	83.029	0.96269	80.733	80.48	81.443	-2.2963					34	19	3	0	0	0	0.025445	1	4784	4784		50.034	5.6563	1	52175	+		4901	24818	3862	3871	6150	6150					0.05916167217901602
DNKYDSLSSL	10	Unmodified	_DNKYDSLSSL_					0	0	0		tr|A0A7D6W2Y0|A0A7D6W2Y0_9CLOTHAMPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07770PE=3SV=1	tr|A0A7D6W2Y0|A0A7D6W2Y0_9CLOTHAMPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07770PE=3SV=1	tr|A0A7D6W2Y0|A0A7D6W2Y0_9CLOTHAMPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07770PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	571.2738037109375	2	571.272218	1140.52988	-0.85491	-0.00048839	0.79531	0.00045434	-0.059601	-3.4048E-05	571.2725686803448	49.535	0.8244	49.535	49.119	49.944	0					34	13	3	0	0	0	0.3094	1	3716	3716		79.713	4.6693	1	1084600			4902	35442	3863	3872	6151	6151					-0.03476080215409638
DNLKRVKQK	9	Unmodified	_DNLKRVKQK_					0	0	0		MYH8|p.Q1214K|1|0.48|ENSG00000133020|chr17:10400485-10400485|G/T|missense_variant	MYH8|p.Q1214K|1|0.48|ENSG00000133020|chr17:10400485-10400485|G/T|missense_variant	MYH8|p.Q1214K|1|0.48|ENSG00000133020|chr17:10400485-10400485|G/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.8355102539062	2	564.846022	1127.67749	0.34042	0.00019229	-0.98489	-0.00055631	-0.64447	-0.00036402	564.845388700199	30.926	0.43979	30.926	30.731	31.171	0					18	8	3	0	0	0	0.027462	1	1247	1247		34.173	0	1	277500			4903	14850	3864	3873	6152	6152					0.11875900899894987
DNLLKLDIL	9	Unmodified	_DNLLKLDIL_					0	0	0		tr|A0A553SNW9|A0A553SNW9_NIACIDNApolymeraseIIIPolC-typeOS=NialliacirculansOX=1397GN=polCPE=3SV=1	tr|A0A553SNW9|A0A553SNW9_NIACIDNApolymeraseIIIPolC-typeOS=NialliacirculansOX=1397GN=polCPE=3SV=1	tr|A0A553SNW9|A0A553SNW9_NIACIDNApolymeraseIIIPolC-typeOS=NialliacirculansOX=1397GN=polCPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.2802124023438	2	528.818607	1055.62266	-0.17786	-9.4058E-05	-0.08501	-4.4955E-05	-0.26287	-0.00013901	528.818083721424	110.04	1.0512	108.9	108.61	109.66	-1.1444					28	19	2	0	0	0	0.027462	1	7921	7921		31.53	0	1	63265			4904	33972	3865	3874	6153	6153					0.09707469308614236
DNLMHVFHDD	10	Oxidation (M)	_DNLM(Oxidation (M))HVFHDD_		DNLM(1)HVFHDD		DNLM(55)HVFHDD	0	0	1		ENSG00000144647|ENST00000344697|POMGNT2	ENSG00000144647|ENST00000344697|POMGNT2	ENSG00000144647|ENST00000344697|POMGNT2	MULTI-MSMS	OvCa99_classI_Rep5	1	629.7609252929688	2	629.761494	1257.50844	3.1174	0.0019632	-4.2332	-0.0026659	-1.1158	-0.00070269	629.7587367953229	90.07	0.57716	90.07	89.804	90.382	0					31	13	3	0	0	0	0.49558	1	9649	9649		54.776	16.965	1	1667100			4905	5168	3866	3875	6154	6154		168			-0.11001788515773114
DNLPRYTKEN	10	Unmodified	_DNLPRYTKEN_					0	0	0			REV__nc|ENSG00000240344|Q9H2H8-2|PPIL3	REV__nc|ENSG00000240344|Q9H2H8-2|PPIL3	MULTI-SECPEP	OvCa9_classI_Rep3	3	624.34619140625	2	625.312209	1248.60986	0.23783	0.00014872	-1.2029	-0.00075221	-0.9651	-0.00060349	625.3110983183234	74.991	0.78485	72.58	72.34	73.125	-2.4106					21	15	3	0	0	0	0.026856	1	3734	3734		29.17	0	1	17690	+		4906	29155	3867	3876	6155	6155					-0.004495938215768547
DNLRRSILA	9	Unmodified	_DNLRRSILA_					0	0	0		tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2623291015625	2	529.309272	1056.60399	1.2923	0.00068402	4.2355	0.0022419	5.5278	0.0029259	529.3115469757932	90.735	1.0403	90.735	90.462	91.502	0					46	25	3	0	0	0	0.027462	1	9827	9827		34.173	23.307	1	3777100			4907	35116	3868	3877	6156	6156					0.07795352457446825
DNLRRSILA	9	Unmodified	_DNLRRSILA_					0	0	0		tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	529.309272	1056.60399	0.081597	4.319E-05	1.4734	0.0007799	1.555	0.00082309	529.3100941443279	92.056	1.2601	90.82	90.379	91.639	-1.2355	0.016297	-0.0014229	NaN	34.173	55	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125690			4908	35116	3868	3877							0.07795352457446825
DNLRRSILA	9	Unmodified	_DNLRRSILA_					0	0	0		tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	529.309272	1056.60399	-1.5482	-0.00081949	2.9116	0.0015411	1.3633	0.00072163	529.3109405144986	92.802	1.1745	90.84	90.606	91.78	-1.9617	0.036728	9.954E-05	NaN	34.173	48	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167930			4909	35116	3868	3877							0.07795352457446825
DNLRRSILA	9	Unmodified	_DNLRRSILA_					0	0	0		tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	529.309272	1056.60399	-1.4916	-0.00078952	3.3375	0.0017666	1.8459	0.00097705	529.311087479754	93.327	1.3581	90.819	90.513	91.871	-2.5072	0.015624	0.00055045	NaN	34.173	43	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160460			4910	35116	3868	3877							0.07795352457446825
DNLVQHRLI	9	Unmodified	_DNLVQHRLI_					0	0	0			REV__nc|ENSG00000132361|O75153|CLUH	REV__nc|ENSG00000132361|O75153|CLUH	MULTI-MSMS	OvCa9_classI_Rep2	2	554.31884765625	2	554.317097	1106.61964	-0.16637	-9.222E-05	1.9878	0.0011019	1.8215	0.0010097	554.3181046507004	121.07	0.88916	120.88	120.65	121.54	-0.19718					28	17	2	0	0	0	0.27546	1	11695	11695		65.803	7.0212	1	87648	+		4911	19071	3869	3878	6157	6157					0.07059638974487825
DNMFEKILH	9	Unmodified	_DNMFEKILH_					0	0	0			REV__chr19:32731883-32738856|104|28.57|0.86|5.06|+|ENST00000647536|TDRD12,TDRD12	REV__chr19:32731883-32738856|104|28.57|0.86|5.06|+|ENST00000647536|TDRD12,TDRD12	MULTI-MSMS	OvCa9_classI_Rep4_	4	573.7853393554688	2	573.784241	1145.55393	-1.0152	-0.00058253	0.94174	0.00054036	-0.073503	-4.2175E-05	573.7844592140136	80.149	2.0443	77.438	76.744	78.788	-2.7106					90	41	4	0	0	0	0.38969	1	6551	6551		52.937	8.5595	1	362430	+		4912	15973	3870	3879	6158	6158					-0.013025182627416143
DNMGQEVITL	10	Unmodified	_DNMGQEVITL_					0	0	0		ENST00000489775.5_1_3:146239586-146251325:-|nuORF;ENST00000494568.5_1_3:146239586-146262297:-|nuORF;nc|ENSG00000188313|O15162-2|PLSCR1;ENST00000478267.5_1_3:146234735-146251325:-|nuORF;ENSG00000188313|ENST00000342435|PLSCR1	ENST00000489775.5_1_3:146239586-146251325:-|nuORF	ENST00000489775.5_1_3:146239586-146251325:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	559.2905883789062	2	560.271164	1118.52777	1.0845	0.00060762	2.5208	0.0014123	3.6053	0.00202	560.2725961146269	123.85	0.67226	122.81	122.51	123.18	-1.0377					19	12	2	0	0	0	0.026867	1	9606	9606		51.193	13.381	1	34846			4913	8464	3871	3880	6159	6159					-0.026748322248977274
DNNFIIYSY	9	Unmodified	_DNNFIIYSY_					0	0	0		tr|A0A7D6VPP6|A0A7D6VPP6_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12355PE=4SV=1	tr|A0A7D6VPP6|A0A7D6VPP6_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12355PE=4SV=1	tr|A0A7D6VPP6|A0A7D6VPP6_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12355PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.7764892578125	2	574.766571	1147.51859	0.89414	0.00051392	-3.7227	-0.0021397	-2.8285	-0.0016257	574.7642757738446	124.49	0.6474	124.49	124.24	124.89	0					29	13	4	0	0	0	0.027448	1	14385	14385		27.882	0	1	343670			4914	34786	3872	3881	6160	6160					-0.049268575188989416
DNNLDSVSL	9	Unmodified	_DNNLDSVSL_					0	0	0		nc|ENSG00000162923|Q9H7D7-2|WDR26;nc|ENSG00000162923|Q9H7D7|WDR26;ENSG00000162923|ENST00000414423|WDR26;ENST00000486652.5_1_1:224601027-224612368:-|nuORF;ENST00000443112.6_1_1:224601027-224621705:-|nuORF	nc|ENSG00000162923|Q9H7D7-2|WDR26	nc|ENSG00000162923|Q9H7D7-2|WDR26	MULTI-MSMS	OvCa99_classI_Rep5	1	488.73406982421875	2	488.732729	975.450904	2.2038	0.0010771	0.20704	0.00010118	2.4108	0.0011782	488.7327132445751	90.477	1.0688	90.477	90.186	91.255	0					58	26	4	0	0	0	0.10363	1	9716	9716		96.19	2.995	1	4962000			4915	6247	3873	3882	6161	6161					-0.03780307449699194
DNPAKLLMEKL	11	Unmodified	_DNPAKLLMEKL_					0	0	0			REV__tr|A0A7D6ZW98|A0A7D6ZW98_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16960PE=4SV=1	REV__tr|A0A7D6ZW98|A0A7D6ZW98_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16960PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	424.572509765625	3	424.572446	1270.69551	0.029136	1.237E-05	-2.082	-0.00088394	-2.0528	-0.00087157	424.5714957881193	73.365	0.52271	73.365	73.155	73.678	0					23	12	2	0	0	0	0.50844	1	7196	7196		53.013	2.2216	1	898770	+		4916	32278	3874	3883	6162	6162					0.07098855039726004
DNPAKLLMEKL	11	Unmodified	_DNPAKLLMEKL_					0	0	0			REV__tr|A0A7D6ZW98|A0A7D6ZW98_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16960PE=4SV=1	REV__tr|A0A7D6ZW98|A0A7D6ZW98_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16960PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	424.572446	1270.69551	0.029136	1.237E-05	-2.082	-0.00088394	-2.0528	-0.00087157	424.5714957881193	73.365	0.52271	73.365	73.155	73.678	0	0	0	NaN	53.013	23	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	898770	+		4917	32278	3874	3883							0.07098855039726004
DNPEEHVLK	9	Unmodified	_DNPEEHVLK_					0	0	0		ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.861572265625	2	540.769645	1079.52474	-1.0707	-0.00057898	-2.2994	-0.0012434	-3.3701	-0.0018224	540.7683928955179	77.095	1.1543	74.278	73.767	74.922	-2.8165					31	23	2	0	0	0	0.027462	1	6122	6122		34.173	1.3601	1	40668			4918	2139	3875	3884	6163	6163					-0.011843392873970515
DNPEEKALIVD	11	Unmodified	_DNPEEKALIVD_					0	0	0		ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MULTI-SECPEP	OvCa99_classI_Rep5	1	620.8292846679688	2	621.81425	1241.61395	1.0798	0.00067146	-4.3648	-0.0027141	-3.285	-0.0020426	621.8118304458322	119.12	0.70491	119.12	118.72	119.43	0					21	14	2	0	0	0	0.025378	1	13672	13672		51.528	16.376	1	107460			4919	5232	3876	3885	6164	6164					0.0028045088147337083
DNPNLVIRIY	10	Unmodified	_DNPNLVIRIY_					0	0	0		ENSG00000101577|ENST00000677752|LPIN2;LPIN2|p.S638Lfs*12|1|0.09|ENSG00000101577|chr18:2925250-2925250|A/-|frameshift_variant	ENSG00000101577|ENST00000677752|LPIN2	ENSG00000101577|ENST00000677752|LPIN2	MULTI-MSMS	OvCa99_classI_Rep5	1	608.8380126953125	2	608.837862	1215.66117	1.2125	0.00073819	-1.4252	-0.00086774	-0.21279	-0.00012956	608.8368613491077	156.48	2.1073	156.48	156.04	158.15	0					128	41	5	0	0	0	0.70152	1	18325	18325		30.318	1.1682	1	3302900			4920	2188	3877	3886	6165	6165					0.061967749431460106
DNQGFKVKI	9	Unmodified	_DNQGFKVKI_					0	0	0			REV__TMEM132D|p.K948Tfs*15|1|0.06|ENSG00000151952|chr12:129074331-129074332|TT/-|frameshift_variant	REV__TMEM132D|p.K948Tfs*15|1|0.06|ENSG00000151952|chr12:129074331-129074332|TT/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	524.7933959960938	2	524.792924	1047.57129	-0.80965	-0.0004249	-0.048157	-2.5272E-05	-0.85781	-0.00045017	524.7927403803037	78.228	1.5974	75.875	75.596	77.193	-2.3527					60	31	2	0	0	0	0.27001	1	4154	4154		66.429	9.7082	1	1037800	+		4921	20265	3878	3887	6166	6166					0.049411453345555856
DNQIDQWRA	9	Unmodified	_DNQIDQWRA_					0	0	0			REV__ENSG00000111642|ENST00000544040|CHD4;REV__ENSG00000116254|ENST00000262450|CHD5	REV__ENSG00000111642|ENST00000544040|CHD4	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.328125	2	573.270344	1144.52613	1.3775	0.0007897	0.75321	0.0004318	2.1308	0.0012215	573.2706223168183	119.61	0.70444	119.61	119.52	120.23	0					21	16	2	0	0	0	0.027462	1	13786	13786		10.866	0	1	104780	+		4922	18041;18295	3879	3888	6167	6167					-0.04034705198614574
DNRILHLMND	10	Unmodified	_DNRILHLMND_					0	0	0		tr|A0A553STD6|A0A553STD6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04760PE=4SV=1	tr|A0A553STD6|A0A553STD6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04760PE=4SV=1	tr|A0A553STD6|A0A553STD6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04760PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	414.21087646484375	3	414.208278	1239.60301	0.28415	0.0001177	3.0137	0.0012483	3.2979	0.001366	414.2094540183585	49.088	5.926	49.088	48.204	54.13	0					277	137	3	0	0	0	0.67729	1	3697	3697		33.039	0.28887	1	1950600			4923	34476	3880	3889	6168	6168					-0.007212299738057482
DNRINVLKV	9	Unmodified	_DNRINVLKV_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1;REV__MACF1-CMTM4|1|fusion;REV__nc|ENSG00000178209|Q15149-7|PLEC;REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-MSMS	OvCa9_classI_Rep2	2	535.821533203125	2	535.819473	1069.62439	-1.4267	-0.00076446	0.97666	0.00052332	-0.45004	-0.00024114	535.8198506740164	57.839	1.5468	55.047	54.477	56.024	-2.792					83	30	3	0	0	0	0.42576	1	4133	4133		49.536	5.1589	1	571980	+		4924	20262;18823;28637;22051	3881	3890	6169	6169					0.09236523117237994
DNRRRRFL	8	Unmodified	_DNRRRRFL_					0	0	0			REV__ENSG00000134030|ENST00000256413|CTIF	REV__ENSG00000134030|ENST00000256413|CTIF	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.2933959960938	2	566.825955	1131.63736	0.27138	0.00015382	2.6832	0.0015209	2.9546	0.0016747	566.82765605321	70.654	0.50642	70.654	70.408	70.915	0					26	12	3	0	0	0	0.028476	1	6824	6824		6.3127	0	1	1140100	+		4925	19171	3882	3891	6170	6170					0.07680399019977813
DNSARCEYTGT	11	Unmodified	_DNSARCEYTGT_					0	0	0			REV__ENSG00000172270|ENST00000333511|BSG	REV__ENSG00000172270|ENST00000333511|BSG	MULTI-SECPEP	OvCa99_classI_Rep5	1	406.56915283203125	3	406.168148	1215.48262	1.338	0.00054345	0.27813	0.00011297	1.6161	0.00065642	406.50269277062887	58.302	0.37603	58.302	58.112	58.488	0					15	8	2	0	0	0	0.025814	1	4964	4964		14.243	0	1	143760	+		4926	21687	3883	3892	6171	6171					-0.11650682758090625
DNSYLYLVME	10	Unmodified	_DNSYLYLVME_					0	0	0		ENSG00000165059|ENST00000377276|PRKACG	ENSG00000165059|ENST00000377276|PRKACG	ENSG00000165059|ENST00000377276|PRKACG	MULTI-SECPEP	OvCa99_classI_Rep5	1	622.8187255859375	2	623.786647	1245.55874	0.94062	0.00058675	1.5713	0.00098014	2.5119	0.0015669	623.786951196787	150.4	0.39804	150.4	150.24	150.64	0					13	7	2	0	0	0	0.026994	1	17613	17613		32.812	11.865	1	21902			4927	6514	3884	3893	6172	6172					-0.054216789106476426
DNTRVLVAE	9	Unmodified	_DNTRVLVAE_					0	0	0		tr|A0A7D7A0Z8|A0A7D7A0Z8_9CLOTAldehyde-alcoholdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=adhEPE=3SV=1	tr|A0A7D7A0Z8|A0A7D7A0Z8_9CLOTAldehyde-alcoholdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=adhEPE=3SV=1	tr|A0A7D7A0Z8|A0A7D7A0Z8_9CLOTAldehyde-alcoholdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=adhEPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.802001953125	2	508.772188	1015.52982	-1.1926	-0.00060678	1.5502	0.00078872	0.3576	0.00018194	508.77272018490885	54.421	1.0768	51.174	50.876	51.953	-3.2474					39	20	5	0	0	0	0.027441	1	3379	3379		58.782	11.125	1	459480			4928	36015	3885	3894	6173	6173					0.022679645752305078
DNVIHSPSL	9	Unmodified	_DNVIHSPSL_					0	0	0			REV__ENSG00000165868|ENST00000369209|HSPA12A	REV__ENSG00000165868|ENST00000369209|HSPA12A	MULTI-MSMS	OvCa9_classI_Rep4_	4	491.25469970703125	2	491.253631	980.49271	-0.50471	-0.00024794	-0.11742	-5.7684E-05	-0.62213	-0.00030562	491.2535944036572	81.082	1.2228	78.371	77.858	79.081	-2.7106					60	24	3	0	0	0	0.35444	1	6658	6658		56.721	1.2168	1	425940	+		4929	21130	3886	3895	6174	6174					0.0016829302946916869
DNVIHSPSL	9	Unmodified	_DNVIHSPSL_					0	0	0			REV__ENSG00000165868|ENST00000369209|HSPA12A	REV__ENSG00000165868|ENST00000369209|HSPA12A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	491.253631	980.49271	-0.32659	-0.00016044	0.6536	0.00032108	0.32701	0.00016065	491.25410154070863	80.443	1.1687	78.12	77.581	78.749	-2.3226	-0.12543	0.00062467	NaN	56.721	54	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	391180	+		4930	21130	3886	3895							0.0016829302946916869
DNVIHSPSL	9	Unmodified	_DNVIHSPSL_					0	0	0			REV__ENSG00000165868|ENST00000369209|HSPA12A	REV__ENSG00000165868|ENST00000369209|HSPA12A	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	491.253631	980.49271	-0.50471	-0.00024794	-0.11742	-5.7684E-05	-0.62213	-0.00030562	491.2535944036572	81.082	1.2228	78.371	77.858	79.081	-2.7106	0.12543	-0.00013286	NaN	56.721	60	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	425940	+		4931	21130	3886	3895							0.0016829302946916869
DNVVNVDFTP	10	Unmodified	_DNVVNVDFTP_					0	0	0		nc|ENSG00000066230|P48764-2|SLC9A3;ENSG00000066230|ENST00000264938|SLC9A3	nc|ENSG00000066230|P48764-2|SLC9A3	nc|ENSG00000066230|P48764-2|SLC9A3	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.3248901367188	2	560.269478	1118.5244	2.3695	0.0013275	-2.1573	-0.0012087	0.21214	0.00011886	560.2681240817432	122.39	0.82307	122.39	122.17	123	0					28	17	2	0	0	0	0.026994	1	14086	14086		25.574	7.2496	1	70491			4932	1346	3887	3896	6175	6175					-0.03011759007222281
DNWEEYSI	8	Unmodified	_DNWEEYSI_					0	0	0			REV__ENSG00000151348|ENST00000533608|EXT2	REV__ENSG00000151348|ENST00000533608|EXT2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.3056640625	2	528.219454	1054.42436	-1.6847	-0.00088991	1.2755	0.00067375	-0.40923	-0.00021616	528.2201328476355	50.841	0.96588	47.668	47.308	48.274	-3.1734					29	18	2	0	0	0	0.028476	1	2930	2930		24.203	17.009	1	26843	+		4933	20224	3888	3897	6176	6176					-0.10067996341035723
DNWGNQPRQP	10	Unmodified	_DNWGNQPRQP_					0	0	0			REV__RNF2-SEC31A|3|fusion	REV__RNF2-SEC31A|3|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	606.3588256835938	2	606.281243	1210.54793	0.42244	0.00025612	2.9039	0.0017606	3.3264	0.0020167	606.2824583451979	105.39	0.64433	103.37	103.1	103.74	-2.0161					20	12	3	0	0	0	0.027028	1	9552	9552		24.519	7.1542	1	18781	+		4934	28885	3889	3898	6177	6177					-0.04891900450070352
DNWGNQPRQP	10	Unmodified	_DNWGNQPRQP_					0	0	0			REV__RNF2-SEC31A|3|fusion	REV__RNF2-SEC31A|3|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	606.281243	1210.54793	-1.1409	-0.00069172	3.1406	0.0019041	1.9997	0.0012124	606.2830828426106	103.98	0.59431	103.4	103.23	103.82	-0.57639	0.059842	0.00087495	NaN	24.519	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21649	+		4935	28885	3889	3898							-0.04891900450070352
DNWGNQPRQP	10	Unmodified	_DNWGNQPRQP_					0	0	0			REV__RNF2-SEC31A|3|fusion	REV__RNF2-SEC31A|3|fusion	MULTI-MATCH	OvCa9_classI_Rep3	3		2	606.281243	1210.54793	2.0889	0.0012664	0.082063	4.9753E-05	2.1709	0.0013162	606.2813518915469	104.69	0.83033	103.25	102.81	103.64	-1.4347	-0.088401	-0.0028337	NaN	24.519	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27857	+		4936	28885	3889	3898							-0.04891900450070352
DNWPNIFNLL	10	Unmodified	_DNWPNIFNLL_					0	0	0			REV__tr|A0A7D6ZS73|A0A7D6ZS73_9CLOTProbablepeptidoglycanglycosyltransferaseFtsWOS=ClostridiumintestinaleOX=36845GN=spoVEPE=3SV=1	REV__tr|A0A7D6ZS73|A0A7D6ZS73_9CLOTProbablepeptidoglycanglycosyltransferaseFtsWOS=ClostridiumintestinaleOX=36845GN=spoVEPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	623.3189086914062	2	623.316763	1244.61897	2.7901	0.0017391	-1.1487	-0.00071602	1.6414	0.0010231	623.3159837519189	89.66	0.79233	89.66	89.394	90.186	0					50	18	4	0	0	0	0.40664	1	9569	9569		67.494	7.5629	1	9612300	+		4937	32179	3890	3899	6178	6178					0.006447995347571123
DNYIAQGKRKS	11	Unmodified	_DNYIAQGKRKS_					0	0	0		ENSG00000121486|ENST00000367506|TRMT1L	ENSG00000121486|ENST00000367506|TRMT1L	ENSG00000121486|ENST00000367506|TRMT1L	MULTI-MSMS	OvCa9_classI_Rep2	2	640.34130859375	2	640.341301	1278.66805	-2.0951	-0.0013416	1.865	0.0011942	-0.2301	-0.00014734	640.3424545682959	51.93	1.532	49.117	48.7	50.232	-2.8129					86	30	4	0	0	0	0.43443	1	3443	3443		41.427	9.8968	1	488120			4938	3487	3891	3900	6179	6179					0.0398608782370502
DPAHSEKARR	10	Unmodified	_DPAHSEKARR_					0	0	0		ENST00000265465.7_1_11:65064827-65065079:+|nuORF	ENST00000265465.7_1_11:65064827-65065079:+|nuORF	ENST00000265465.7_1_11:65064827-65065079:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8026733398438	2	583.804885	1165.59522	0.9784	0.0005712	-4.2361	-0.0024731	-3.2577	-0.0019019	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.75313	1	1334	1334		24.519	2.5593	1	155970			4939	9951	3892	3901	6180	6180					0.019043788209501145
DPAIVQQLI	9	Unmodified	_DPAIVQQLI_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.7892761230469	2	498.78985	995.565146	-0.32841	-0.00016381	-0.93942	-0.00046857	-1.2678	-0.00063238	498.78933667981374	116.43	2.9591	115.07	114.6	117.56	-1.3645					206	56	7	0	0	0	0.21395	1	10928	10928		73.975	2.679	1	3166500			4940	3125	3893	3902	6181	6181					0.06718627103043673
DPAKGPTLAL	10	Unmodified	_DPAKGPTLAL_					0	0	0		ENST00000539325.1_3_11:63994255-63994456:+|nuORF	ENST00000539325.1_3_11:63994255-63994456:+|nuORF	ENST00000539325.1_3_11:63994255-63994456:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	491.78204345703125	2	491.782025	981.549496	-0.96888	-0.00047648	0.50767	0.00024966	-0.46121	-0.00022681	491.7821166855375	85.065	2.7262	83.519	82.95	85.676	-1.5462					113	53	3	0	0	0	0.44431	1	7349	7349		62.107	1.1355	1	636350			4941	13435	3894	3903	6182	6182					0.057983405859772574
DPAKGVKKET	10	Unmodified	_DPAKGVKKET_					0	0	0		tr|A0A7D6VS94|A0A7D6VS94_9CLOTPeptidasedomain-containingABCtransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_22100PE=4SV=1	tr|A0A7D6VS94|A0A7D6VS94_9CLOTPeptidasedomain-containingABCtransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_22100PE=4SV=1	tr|A0A7D6VS94|A0A7D6VS94_9CLOTPeptidasedomain-containingABCtransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_22100PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	535.813720703125	2	536.803488	1071.59242	-0.59232	-0.00031796	0.20406	0.00010954	-0.38825	-0.00020842	536.8036212116766	44.387	0.39854	41.677	41.552	41.951	-2.7097					12	7	2	0	0	0	0.026694	1	2550	2550		31.634	0	1	22754			4942	35000	3895	3904	6183	6183					0.05949110643427957
DPALVLVAL	9	Unmodified	_DPALVLVAL_					0	0	0		tr|A0A553SS41|A0A553SS41_NIACITrmBfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02290PE=4SV=1	tr|A0A553SS41|A0A553SS41_NIACITrmBfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02290PE=4SV=1	tr|A0A553SS41|A0A553SS41_NIACITrmBfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02290PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	455.7840576171875	2	455.784036	909.553519	1.7881	0.00081498	0.44988	0.00020505	2.238	0.00102	455.7840715869705	127.09	0.58218	127.09	126.73	127.32	0					19	12	2	0	0	0	0.32337	1	14701	14701		60.294	4.7898	1	112460			4943	34330	3896	3905	6184	6184					0.09512430079701062
DPAPVSGHTQF	11	Unmodified	_DPAPVSGHTQF_					0	0	0			REV__ENSG00000103994|ENST00000564754|ZNF106	REV__ENSG00000103994|ENST00000564754|ZNF106	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.288818359375	2	578.275095	1154.53564	1.4704	0.0008503	2.1621	0.0012503	3.6325	0.0021006	578.2760998983272	134.66	0.93428	134.66	134.47	135.41	0					52	20	3	0	0	0	0.025344	1	15669	15669		33.922	7.2287	1	447360	+		4944	17638	3897	3906	6185	6185					-0.03544936913090169
DPASFMPPQ	9	Unmodified	_DPASFMPPQ_					0	0	0		ENSG00000101745|ENST00000262126|ANKRD12;nc|ENSG00000101745|Q6UB98-2|ANKRD12	ENSG00000101745|ENST00000262126|ANKRD12	ENSG00000101745|ENST00000262126|ANKRD12	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.7920227050781	2	495.223485	988.432418	-0.040028	-1.9823E-05	-2.6253	-0.0013001	-2.6653	-0.0013199	495.22189796046973	98.579	0.66725	96.2	95.971	96.638	-2.3786					21	12	2	0	0	0	0.027462	1	8754	8754		10.866	5.9598	1	35223			4945	2197	3898	3907	6186	6186					-0.06226140625255994
DPASFMPPQ	9	Unmodified	_DPASFMPPQ_					0	0	0		ENSG00000101745|ENST00000262126|ANKRD12;nc|ENSG00000101745|Q6UB98-2|ANKRD12	ENSG00000101745|ENST00000262126|ANKRD12	ENSG00000101745|ENST00000262126|ANKRD12	MULTI-MATCH	OvCa9_classI_Rep3	3		2	495.223485	988.432418	-0.62531	-0.00030967	-2.9554	-0.0014636	-3.5807	-0.0017732	495.2218992878436	97.827	0.6984	96.068	95.77	96.469	-1.7595	-0.066251	-0.00012881	NaN	9.7057	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26673			4946	2197	3898	3907							-0.06226140625255994
DPASPGTADTA	11	Unmodified	_DPASPGTADTA_					0	0	0		ENST00000581412.1_1_17:72596059-72600281:+|nuORF	ENST00000581412.1_1_17:72596059-72600281:+|nuORF	ENST00000581412.1_1_17:72596059-72600281:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	502.28192138671875	2	501.722361	1001.43017	-1.0059	-0.00050466	-3.7266	-0.0018697	-4.7324	-0.0023744	501.7201266984224	94.419	0.29926	93.32	93.062	93.361	-1.0995					6	5	2	0	0	0	0.026007	1	8424	8424		18.262	0	1	4155.5			4947	13996	3899	3908	6187	6187					-0.07048897829372436
DPAVRFDFS	9	Unmodified	_DPAVRFDFS_					0	0	0			REV__ENST00000465121.5_1_3:52018080-52021658:+|nuORF	REV__ENST00000465121.5_1_3:52018080-52021658:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.762939453125	2	527.253631	1052.49271	-0.60312	-0.000318	1.2851	0.0006776	0.68202	0.0003596	527.2542992546612	122.21	0.81033	120.84	120.5	121.31	-1.3666					28	15	3	0	0	0	0.027461	1	11510	11510		49.442	8.6634	1	24698	+		4948	23472	3900	3909	6188	6188					-0.031437069705361864
DPCRWKHL	8	Unmodified	_DPCRWKHL_					0	0	0			REV__ACTR5|p.Q306Rfs*29|1|0.16|ENSG00000101442|chr20:38755097-38755097|C/-|frameshift_variant	REV__ACTR5|p.Q306Rfs*29|1|0.16|ENSG00000101442|chr20:38755097-38755097|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.31494140625	2	527.766186	1053.51782	-0.51498	-0.00027179	2.3971	0.0012651	1.8822	0.00099334	527.768484836169	75.479	0.24285	72.54	72.449	72.692	-2.9389					8	4	2	0	0	0	0.028476	1	5947	5947		24.203	0	1	21347	+		4949	15562	3901	3910	6189	6189					-0.00679930648948357
DPDETLGCLN	10	Unmodified	_DPDETLGCLN_					0	0	0			REV__nc|ENSG00000149131|P05155-3|SERPING1	REV__nc|ENSG00000149131|P05155-3|SERPING1	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.343505859375	2	538.731871	1075.44919	0.8058	0.00043411	4.2928	0.0023127	5.0986	0.0027468	538.7341520770995	132.11	0.41916	132.11	131.95	132.36	0					10	8	2	0	0	0	0.026891	1	15330	15330		47.657	23.138	1	36085	+	+	4950	28921	3902	3911	6190	6190					-0.08551684529948034
DPDHYLKL	8	Unmodified	_DPDHYLKL_					0	0	0			REV__nc|ENSG00000159899|P20594-2|NPR2	REV__nc|ENSG00000159899|P20594-2|NPR2	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.3017272949219	2	500.758549	999.502546	-1.4858	-0.00074405	1.4457	0.00072394	-0.040164	-2.0112E-05	500.7590881808029	102.32	1.5301	101.64	101.34	102.87	-0.68459					50	30	3	0	0	0	0.028476	1	9505	9505		73.975	24.533	1	71792	+		4951	20631	3903	3912	6191	6191					0.002774810348455503
DPDIDMIAR	9	Unmodified	_DPDIDMIAR_					0	0	0			REV__ENSG00000151687|ENST00000684021|ANKAR	REV__ENSG00000151687|ENST00000684021|ANKAR	MULTI-SECPEP	OvCa9_classI_Rep3	3	522.8069458007812	2	523.252774	1044.491	-0.84202	-0.00044059	0.51153	0.00026766	-0.33049	-0.00017293	523.2524414897056	94.47	1.4592	92.574	92.204	93.664	-1.8956					55	28	4	0	0	0	0.027455	1	6068	6068		26.693	0	1	132590	+		4952	20247	3904	3913	6192	6192					-0.029470840507883622
DPDLDSDKDET	11	Unmodified	_DPDLDSDKDET_					0	0	0		ENST00000570005.5_1_16:2732549-2747193:+|nuORF;ENSG00000167977|ENST00000301738|KCTD5	ENST00000570005.5_1_16:2732549-2747193:+|nuORF	ENST00000570005.5_1_16:2732549-2747193:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	417.1900329589844	3	417.173733	1248.49937	0.91461	0.00038155	2.5026	0.001044	3.4172	0.0014256	417.17410839910895	73.944	0.3026	73.944	73.717	74.02	0					11	7	2	0	0	0	0.02538	1	7254	7254		26.75	0	1	127910			4953	6855	3905	3914	6193	6193					-0.1149390339112415
DPDLDSDKDET	11	Unmodified	_DPDLDSDKDET_					0	0	0		ENST00000570005.5_1_16:2732549-2747193:+|nuORF;ENSG00000167977|ENST00000301738|KCTD5	ENST00000570005.5_1_16:2732549-2747193:+|nuORF	ENST00000570005.5_1_16:2732549-2747193:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	625.2811279296875	2	625.256962	1248.49937	0.28896	0.00018067	-4.158	-0.0025998	-3.869	-0.0024191	625.2551445695794	73.963	0.22793	73.963	73.792	74.02	0					13	5	3	0	0	0	0.025759	1	7276	7276		28.081	0	1	420700			4954	6855	3905	3914	6194	6194					-0.1149390339112415
DPDLVSTEYVL	11	Unmodified	_DPDLVSTEYVL_					0	0	0			REV__ENSG00000062485|ENST00000351328|CS	REV__ENSG00000062485|ENST00000351328|CS	MULTI-MSMS	OvCa99_classI_Rep5	1	625.8112182617188	2	625.811176	1249.6078	0.76118	0.00047636	-1.1797	-0.00073826	-0.4185	-0.0002619	625.8100732584782	132.17	0.75224	132.17	131.85	132.6	0					25	15	3	0	0	0	0.50928	1	15355	15355		52.937	12.879	1	171590	+		4955	16751	3906	3915	6195	6195					-0.007020673500619523
DPEAHIKHLL	10	Unmodified	_DPEAHIKHLL_					0	0	0		nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1;ENST00000572330.5_1_17:4736842-4793277:+|nuORF	nc|ENSG00000141503|Q8N4C8-3|MINK1	nc|ENSG00000141503|Q8N4C8-3|MINK1	MULTI-MSMS	OvCa9_classI_Rep3	3	586.8238525390625	2	586.824755	1171.63496	-5.6686	-0.0033265	3.6369	0.0021342	-2.0317	-0.0011922	586.8267226357335	149.07	1.5069	148.12	147.65	149.16	-0.9512					81	29	4	0	0	0	0.72319	1	12631	12631		27.882	1.0861	1	213470			4956	15064	3907	3916	6196	6196					0.056005057716674855
DPEHRAVLLT	10	Unmodified	_DPEHRAVLLT_					0	0	0		ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	ENSG00000111961|ENST00000367467|SASH1	MULTI-SECPEP	OvCa9_classI_Rep2	2	574.835693359375	2	575.814387	1149.61422	1.0556	0.00060783	2.3832	0.0013723	3.4388	0.0019801	575.8157604088019	89.861	1.2363	88.559	88.285	89.521	-1.302					93	24	5	0	0	0	0.026551	1	7935	7935		69.628	30.375	1	694740			4957	2869	3908	3917	6197	6197					0.04539915391978866
DPEKLVEQV	9	Unmodified	_DPEKLVEQV_					0	0	0			REV__ENSG00000084734|ENST00000264717|GCKR	REV__ENSG00000084734|ENST00000264717|GCKR	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.3046264648438	2	528.782222	1055.54989	-1.2798	-0.00067675	3.3946	0.001795	2.1147	0.0011182	528.7826042577414	103.68	0.34546	103.1	102.98	103.32	-0.57639					8	6	2	0	0	0	0.027418	1	9600	9600		52.937	15.125	1	9043	+		4958	17127	3909	3918	6198	6198					0.02433715515167023
DPELMFRI	8	Unmodified	_DPELMFRI_					0	0	0			REV__ENSG00000138756|ENST00000502613|BMP2K	REV__ENSG00000138756|ENST00000502613|BMP2K	MULTI-SECPEP	OvCa9_classI_Rep2	2	511.2250671386719	2	510.762778	1019.511	0.7782	0.00039747	2.2936	0.0011715	3.0718	0.001569	510.7638851971749	42.502	1.0859	39.792	39.473	40.559	-2.7097					43	21	3	0	0	0	0.028476	1	2321	2321		17.365	0	1	120810	+		4959	19567	3910	3919	6199	6199					0.002027116798217321
DPEPKYGLSVT	11	Unmodified	_DPEPKYGLSVT_					0	0	0		tr|A0A7D6ZHA0|A0A7D6ZHA0_9CLOTSelenide,waterdikinaseOS=ClostridiumintestinaleOX=36845GN=selDPE=3SV=1	tr|A0A7D6ZHA0|A0A7D6ZHA0_9CLOTSelenide,waterdikinaseOS=ClostridiumintestinaleOX=36845GN=selDPE=3SV=1	tr|A0A7D6ZHA0|A0A7D6ZHA0_9CLOTSelenide,waterdikinaseOS=ClostridiumintestinaleOX=36845GN=selDPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	602.3392944335938	2	603.306061	1204.59757	0.1653	9.9725E-05	-3.007	-0.0018141	-2.8417	-0.0017144	603.3042773852907	52.501	0.34975	52.501	52.304	52.653	0					13	7	2	0	0	0	0.025714	1	4126	4126		25.126	11.672	1	324790			4960	35568	3911	3920	6200	6200					0.0034536971536454075
DPEYLKPSL	9	Unmodified	_DPEYLKPSL_					0	0	0			REV__FAM120A|p.R999*|1|0.08|ENSG00000048828|chr9:93562253-93562254|-/T|frameshift_variant	REV__FAM120A|p.R999*|1|0.08|ENSG00000048828|chr9:93562253-93562254|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	531.8064575195312	2	531.279315	1060.54408	-0.85597	-0.00045476	-4.4145	-0.0023453	-5.2705	-0.0028001	531.7778169532589	78.522	0.4834	76.783	76.565	77.048	-1.7398					12	9	2	0	0	0	0.02744	1	6562	6562		52.937	17.318	1	25564	+		4961	16673	3912	3921	6201	6201					0.01622617003522464
DPFIPGLLSN	10	Unmodified	_DPFIPGLLSN_					0	0	0		ENSG00000175520|ENST00000311659|UBQLN3	ENSG00000175520|ENST00000311659|UBQLN3	ENSG00000175520|ENST00000311659|UBQLN3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.3088989257812	2	536.787307	1071.56006	1.9679	0.0010563	-2.0565	-0.0011039	-0.088656	-4.7589E-05	536.7860522014937	135.29	1.2342	133.75	133.46	134.69	-1.5437					56	24	3	0	0	0	0.026596	1	13191	13191		68.846	29.593	1	165870			4962	7551	3913	3922	6202	6202					0.02714323240434169
DPFIPLQVP	9	Unmodified	_DPFIPLQVP_					0	0	0		ENST00000489327.1_1_2:69705990-69736406:-|nuORF;nc|ENSG00000115977|Q2M2I8-2|AAK1;ENSG00000115977|ENST00000409085|AAK1	ENST00000489327.1_1_2:69705990-69736406:-|nuORF	ENST00000489327.1_1_2:69705990-69736406:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.3040161132812	2	513.286943	1024.55933	-0.17294	-8.8769E-05	-3.8807	-0.0019919	-4.0537	-0.0020807	513.2848528517526	102.49	1.2517	100.97	100.58	101.83	-1.5211					54	23	3	0	0	0	0.027447	1	7147	7147		56.721	9.9546	1	113750			4963	3145	3914	3923	6203	6203					0.04803528591378381
DPFKNKALL	9	Unmodified	_DPFKNKALL_					0	0	0		nc|ENSG00000127527|Q9UBC2|EPS15L1;ENSG00000127527|ENST00000455140|EPS15L1;nc|ENSG00000127527|Q9UBC2-3|EPS15L1;EPS15L1-SLC15A5|1|fusion	nc|ENSG00000127527|Q9UBC2|EPS15L1	nc|ENSG00000127527|Q9UBC2|EPS15L1	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3043823242188	2	523.305667	1044.59678	-2.1227	-0.0011108	-1.8084	-0.00094634	-3.9311	-0.0020572	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.5811	1	11339	11339		34.173	5.9183	1	183010			4964	3837	3915	3924	6204	6204					0.0762661985700106
DPFLLHWL	8	Unmodified	_DPFLLHWL_					0	0	0			REV__L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|391|3|anti-sense	REV__L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|391|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.31201171875	2	520.781828	1039.5491	1.3364	0.00069596	-0.37811	-0.00019691	0.95827	0.00049905	520.7817111371119	79.667	0.66818	79.667	79.276	79.944	0					22	16	2	0	0	0	0.028476	1	8170	8170		29.842	0	1	1022900	+		4965	16040	3916	3925	6205	6205					0.030909656567928323
DPFLMRQID	9	Unmodified	_DPFLMRQID_					0	0	0			REV__ENSG00000116128|ENST00000234739|BCL9	REV__ENSG00000116128|ENST00000234739|BCL9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.296630859375	2	567.784241	1133.55393	1.827	0.0010373	-1.0896	-0.00061868	0.73733	0.00041865	568.2853113146904	129.25	0.69087	127.8	127.5	128.19	-1.4565					22	13	2	0	0	0	0.027462	1	12419	12419		27.882	4.8398	1	18633	+		4966	18285	3917	3926	6206	6206					-0.007505182627483009
DPFLMRQID	9	Unmodified	_DPFLMRQID_					0	0	0			REV__ENSG00000116128|ENST00000234739|BCL9	REV__ENSG00000116128|ENST00000234739|BCL9	MULTI-MATCH	OvCa9_classI_Rep2	2		2	567.784241	1133.55393	0.80877	0.00045921	-1.0449	-0.00059329	-0.23615	-0.00013408	567.7834079299203	127.94	0.44243	127.71	127.49	127.93	-0.22697	-0.084191	-0.00039256	NaN	27.882	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12733	+		4967	18285	3917	3926							-0.007505182627483009
DPFLMRQID	9	Unmodified	_DPFLMRQID_					0	0	0			REV__ENSG00000116128|ENST00000234739|BCL9	REV__ENSG00000116128|ENST00000234739|BCL9	MULTI-MATCH	OvCa9_classI_Rep3	3		2	567.784241	1133.55393	0.54866	0.00031152	0.26616	0.00015112	0.81482	0.00046264	568.2862303316002	128.98	0.59337	127.89	127.67	128.26	-1.0933	0.087958	0.0010963	NaN	27.882	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9861.6	+		4968	18285	3917	3926							-0.007505182627483009
DPFVRIVQP	9	Unmodified	_DPFVRIVQP_					0	0	0		ENSG00000235268|ENST00000450979|KDM4E	ENSG00000235268|ENST00000450979|KDM4E	ENSG00000235268|ENST00000450979|KDM4E	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3305053710938	2	535.803291	1069.59203	-0.14111	-7.5609E-05	1.5179	0.00081331	1.3768	0.0007377	535.803143048611	68.589	1.1157	68.589	68.274	69.39	0					30	26	2	0	0	0	0.027461	1	6566	6566		25.574	0	1	137090			4969	9307	3918	3927	6207	6207					0.06001735714244205
DPGGLDYLVL	10	Unmodified	_DPGGLDYLVL_					0	0	0		nc|ENSG00000167733|Q7Z5J1-6|HSD11B1L;nc|ENSG00000167733|Q7Z5J1-3|HSD11B1L	nc|ENSG00000167733|Q7Z5J1-6|HSD11B1L	nc|ENSG00000167733|Q7Z5J1-6|HSD11B1L	MULTI-MSMS	OvCa9_classI_Rep2	2	531.2763061523438	2	531.279315	1060.54408	-2.2318	-0.0011857	-2.2607	-0.0012011	-4.4925	-0.0023868	531.277969370088	85.666	2.2081	84.175	82.801	85.009	-1.4906					97	43	3	0	0	0	0.45225	1	7417	7417		60.972	0	1	628520			4970	15161	3919	3928	6208	6208					0.016226170034997267
DPGIPERGKRL	11	Unmodified	_DPGIPERGKRL_					0	0	0		ENSG00000121904|ENST00000373381|CSMD2;nc|ENSG00000121904|Q7Z408|CSMD2	ENSG00000121904|ENST00000373381|CSMD2	ENSG00000121904|ENST00000373381|CSMD2	MULTI-MSMS	OvCa9_classI_Rep3	3	413.2412109375	3	413.238566	1236.69387	2.1217	0.00087677	4.1789	0.0017269	6.3006	0.0026037	413.24014103402243	64.54	2.2304	61.547	60.987	63.218	-2.9933					100	43	4	0	0	0	0.69308	1	2546	2546		32.034	2.4834	1	320450			4971	3506	3920	3929	6209	6209					0.08498982065998462
DPGIPERLNR	10	Unmodified	_DPGIPERLNR_					0	0	0			REV__ENSG00000116128|ENST00000234739|BCL9	REV__ENSG00000116128|ENST00000234739|BCL9	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.8639526367188	2	583.817461	1165.62037	-1.0145	-0.00059231	0.13245	7.7325E-05	-0.8821	-0.00051498	583.8174818764331	37.536	0.46195	37.536	37.344	37.806	0					15	9	2	0	0	0	0.026968	1	2081	2081		22.58	3.4761	1	88460	+		4972	18285	3921	3930	6210	6210					0.04418433623504825
DPGIPERLNR	10	Unmodified	_DPGIPERLNR_					0	0	0			REV__ENSG00000116128|ENST00000234739|BCL9	REV__ENSG00000116128|ENST00000234739|BCL9	MULTI-MATCH	OvCa9_classI_Rep2	2		2	583.817461	1165.62037	0.0082165	4.7969E-06	-0.55142	-0.00032193	-0.54321	-0.00031713	583.8169054588986	40.618	0.44265	37.908	37.798	38.241	-2.7097	0.10174	-0.0011664	NaN	33.922	9	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16484	+		4973	18285	3921	3930							0.04418433623504825
DPGIPERLNR	10	Unmodified	_DPGIPERLNR_					0	0	0			REV__ENSG00000116128|ENST00000234739|BCL9	REV__ENSG00000116128|ENST00000234739|BCL9	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	583.817461	1165.62037	-1.5917	-0.00092925	0.87056	0.00050825	-0.72112	-0.000421	583.8178696530169	40.929	0.36408	37.975	37.789	38.153	-2.9541	0.16895	0.00049391	NaN	33.922	16	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80037	+		4974	18285	3921	3930							0.04418433623504825
DPGKGLRLI	9	Unmodified	_DPGKGLRLI_					0	0	0		nc|ENSG00000253188|A0A0A0MS04|TRBV6-7	nc|ENSG00000253188|A0A0A0MS04|TRBV6-7	nc|ENSG00000253188|A0A0A0MS04|TRBV6-7	MULTI-MSMS	OvCa9_classI_Rep2	2	484.7985534667969	2	484.798009	967.581465	0.22924	0.00011113	-0.80006	-0.00038787	-0.57082	-0.00027673	484.7977670768121	96.694	2.3628	95.735	94.933	97.296	-0.95857					93	47	4	0	0	0	0.21231	1	8728	8728		74.255	2.9593	1	1346100			4975	15350	3922	3931	6211	6211					0.09637753059814713
DPGNKQLLL	9	Unmodified	_DPGNKQLLL_					0	0	0		nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-MSMS	OvCa9_classI_Rep3	3	500.2902526855469	2	499.287474	996.560395	0.0027377	1.3669E-06	-0.79579	-0.00039733	-0.79305	-0.00039596	499.28710705090845	79.766	2.0701	77.426	76.61	78.68	-2.3399					104	40	4	0	0	0	0.55011	1	4303	4303		37.812	2.1932	1	2058500			4976	7732	3923	3932	6212	6212					0.06197742960296182
DPGPVLNFKP	10	Unmodified	_DPGPVLNFKP_					0	0	0		ENSG00000165164|ENST00000378653|CFAP47;nc|ENSG00000165164|Q6ZTR5-2|CFAP47;nc|ENSG00000165164|Q6ZTR5-1|CFAP47;nc|ENSG00000165164|Q6ZTR5-6|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.2953491210938	2	542.295299	1082.57605	-0.81609	-0.00044256	1.653	0.00089642	0.83693	0.00045386	542.2960267591565	20.867	0.85873	19.528	19.209	20.068	-1.3386					42	17	3	0	0	0	0.67931	1	89	89		32.812	3.6629	1	141380			4977	6529	3924	3933	6213	6213					0.03806029477323136
DPGRETKNN	9	Unmodified	_DPGRETKNN_					0	0	0			REV__tr|A0A7D6VZU8|A0A7D6VZU8_9CLOTNADP-dependentglyceraldehyde-3-phosphatedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21460PE=3SV=1	REV__tr|A0A7D6VZU8|A0A7D6VZU8_9CLOTNADP-dependentglyceraldehyde-3-phosphatedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21460PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	515.7500610351562	2	515.749244	1029.48394	0.78461	0.00040466	3.7814	0.0019502	4.566	0.0023549	515.7511516443681	131.35	1.919	131.12	130.7	132.62	-0.22696					91	38	4	0	0	0	0.53483	1	12966	12966		39.253	5.0803	1	572010	+		4978	31846	3925	3934	6214	6214					-0.029626806069927625
DPGVLYAFRI	10	Unmodified	_DPGVLYAFRI_					0	0	0		nc|ENSG00000283703|P0DP72|VSIG10L2;ENSG00000283703|ENST00000686984|VSIG10L2	nc|ENSG00000283703|P0DP72|VSIG10L2	nc|ENSG00000283703|P0DP72|VSIG10L2	MULTI-SECPEP	OvCa9_classI_Rep3	3	576.3535766601562	2	575.816399	1149.61824	-0.45573	-0.00026242	-3.8559	-0.0022203	-4.3116	-0.0024827	575.8142743560703	72.057	1.2354	69.455	68.982	70.217	-2.6023					48	24	3	0	0	0	0.026523	1	3419	3419		52.937	20.124	1	48532			4979	9618	3926	3935	6215	6215					0.04942004885697315
DPGWQIQLV	9	Unmodified	_DPGWQIQLV_					0	0	0			REV__ENST00000550443.5_1_12:56551510-56551743:+|nuORF	REV__ENST00000550443.5_1_12:56551510-56551743:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.2816162109375	2	528.279649	1054.54475	0.071185	3.7605E-05	2.8601	0.0015109	2.9313	0.0015485	528.2810213022229	110.49	1.6308	108.88	108.23	109.86	-1.6011					80	30	3	0	0	0	0.40667	1	10172	10172		51.335	3.4199	1	451410	+		4980	27475	3927	3936	6216	6216					0.0196545644323578
DPGYLWLVQE	10	Unmodified	_DPGYLWLVQE_					0	0	0			REV__nc|ENSG00000105552|O15382-2|BCAT2	REV__nc|ENSG00000105552|O15382-2|BCAT2	MULTI-MSMS	OvCa99_classI_Rep5	1	407.20550537109375	3	407.20464	1218.59209	0.91265	0.00037164	-4.0303	-0.0016411	-3.1176	-0.0012695	407.20318112618986	35.451	0.8314	35.451	35.198	36.029	0					53	17	5	0	0	0	0.63752	1	1783	1783		37.508	0.98027	1	1399300	+		4981	17736	3928	3937	6217	6217					-0.008463090764507797
DPGYVRGSI	9	Unmodified	_DPGYVRGSI_					0	0	0			REV__ATP8B3|p.T555Kfs*30|1|0.36|ENSG00000130270|chr19:1796800-1796801|-/ACATCCT|frameshift_variant	REV__ATP8B3|p.T555Kfs*30|1|0.36|ENSG00000130270|chr19:1796800-1796801|-/ACATCCT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	482.7889709472656	2	482.248349	962.482145	0.12716	6.1321E-05	3.0824	0.0014865	3.2095	0.0015478	482.2496711332818	59.714	0.7355	56.322	55.953	56.689	-3.392					22	14	2	0	0	0	0.027462	1	3973	3973		35.618	3.6634	1	34544	+		4982	15681	3929	3938	6218	6218					-0.000596896249362544
DPHFLPLPI	9	Unmodified	_DPHFLPLPI_					0	0	0		ENSG00000168612|ENST00000372523|ZSWIM1	ENSG00000168612|ENST00000372523|ZSWIM1	ENSG00000168612|ENST00000372523|ZSWIM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.778564453125	2	524.794935	1047.57532	1.4937	0.00078386	1.0084	0.00052918	2.502	0.001313	525.2975268478424	118.51	0.65965	118.51	118.25	118.91	0					16	13	2	0	0	0	0.027462	1	13605	13605		37.028	3.5129	1	95525			4983	6924	3930	3939	6219	6219					0.05343234828296772
DPHGKPYF	8	Unmodified	_DPHGKPYF_					0	0	0		ENST00000529357.5_1_17:43475293-43487738:-|nuORF;ENST00000531735.5_1_17:43481393-43507645:-|nuORF;nc|ENSG00000159314|Q6ZUM4-2|ARHGAP27;ENSG00000159314|ENST00000685559|ARHGAP27	ENST00000529357.5_1_17:43475293-43487738:-|nuORF	ENST00000529357.5_1_17:43475293-43487738:-|nuORF	MSMS	OvCa9_classI_Rep3	3	480.7318115234375	2	480.732335	959.450116	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.017	1	50.819	50.319	51.319	-3.1978								0	0	0	0.30129	1	1350	1350		21.702	2.3424	1				4984	6002	3931	3940	6220	6220					-0.03123057308096122
DPHRPIQAH	9	Unmodified	_DPHRPIQAH_					0	0	0		ENST00000531905.1_1_11:65631192-65631594:+|nuORF;ENST00000530928.5_1_11:65630557-65632047:+|nuORF	ENST00000531905.1_1_11:65631192-65631594:+|nuORF	ENST00000531905.1_1_11:65631192-65631594:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.8225708007812	2	535.778139	1069.54173	0.82544	0.00044226	-2.6204	-0.001404	-1.795	-0.00096171	535.7768407116384	88.359	0.88495	86.991	86.543	87.428	-1.3676					29	17	2	0	0	0	0.027456	1	7747	7747		23.042	0	1	33298			4985	13296	3932	3941	6221	6221					0.009736261090893095
DPHTEFLGPQ	10	Unmodified	_DPHTEFLGPQ_					0	0	0		ENST00000521195.1_1_8:104320096-104343734:+|nuORF;nc|ENSG00000164930|O60353-2|FZD6;ENSG00000164930|ENST00000358755|FZD6	ENST00000521195.1_1_8:104320096-104343734:+|nuORF	ENST00000521195.1_1_8:104320096-104343734:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	569.7859497070312	2	570.769645	1139.52474	0.091575	5.2268E-05	2.8266	0.0016134	2.9182	0.0016656	570.7711273417744	90.577	0.92435	88.002	87.7	88.624	-2.575					42	17	3	0	0	0	0.026659	1	7843	7843		45.972	6.7194	1	136750			4986	6501	3933	3942	6222	6222					-0.03944339287386356
DPHVYGLVD	9	Unmodified	_DPHVYGLVD_					0	0	0			REV__ENSG00000135956|ENST00000258439|TMEM127	REV__ENSG00000135956|ENST00000258439|TMEM127	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.79400634765625	2	507.748182	1013.48181	-1.2303	-0.0006247	-1.2325	-0.00062578	-2.4628	-0.0012505	507.7468762347991	71.556	0.73225	68.099	67.874	68.607	-3.4563					17	14	2	0	0	0	0.027426	1	5464	5464		53.351	17.733	1	24719	+		4987	19341	3934	3943	6223	6223					-0.024391093448116408
DPIDEFMKA	9	Unmodified	_DPIDEFMKA_					0	0	0		ENST00000426028.2_1_9:29825693-29826221:-|nuORF	ENST00000426028.2_1_9:29825693-29826221:-|nuORF	ENST00000426028.2_1_9:29825693-29826221:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.7626342773438	2	533.2497	1064.48485	-2.2321	-0.0011902	-1.6505	-0.00088013	-3.8825	-0.0020704	533.2489234860373	120.07	0.31483	118.73	118.51	118.82	-1.3444					9	5	3	0	0	0	0.027441	1	11264	11264		32.812	1.2826	1	9958.5			4988	11730	3935	3944	6224	6224					-0.04481602282316999
DPIEIILPK	9	Unmodified	_DPIEIILPK_					0	0	0			REV__tr|A0A7D6W2G0|A0A7D6W2G0_9CLOTV-typeATPsynthasesubunitFOS=ClostridiumintestinaleOX=36845GN=HZF06_06140PE=3SV=1	REV__tr|A0A7D6W2G0|A0A7D6W2G0_9CLOTV-typeATPsynthasesubunitFOS=ClostridiumintestinaleOX=36845GN=HZF06_06140PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.3104248046875	2	519.3157	1036.61685	0.13419	6.9688E-05	-0.090274	-4.688E-05	0.043919	2.2808E-05	519.3154106038725	83.232	0.2281	81.634	81.55	81.778	-1.5988					7	4	2	0	0	0	0.027462	1	7125	7125		47.916	24.873	1	15521	+		4989	31897	3936	3945	6225	6225					0.10000370796956304
DPIEIILPK	9	Unmodified	_DPIEIILPK_					0	0	0			REV__tr|A0A7D6W2G0|A0A7D6W2G0_9CLOTV-typeATPsynthasesubunitFOS=ClostridiumintestinaleOX=36845GN=HZF06_06140PE=3SV=1	REV__tr|A0A7D6W2G0|A0A7D6W2G0_9CLOTV-typeATPsynthasesubunitFOS=ClostridiumintestinaleOX=36845GN=HZF06_06140PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.2813110351562	2	519.3157	1036.61685	-0.12187	-6.3289E-05	-3.2431	-0.0016842	-3.365	-0.0017475	519.3141195721919	59.544	0.54113	56.152	55.904	56.445	-3.392					15	10	2	0	0	0	0.027462	1	3958	3958		29.15	0	1	27191	+		4990	31897	3936	3945	6226	6226					0.10000370796956304
DPIFTWNSI	9	Unmodified	_DPIFTWNSI_					0	0	0			REV__nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	REV__nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.8296508789062	2	546.771657	1091.52876	0.16787	9.1785E-05	2.7117	0.0014827	2.8796	0.0015745	546.7733747517588	97.865	0.6058	95.487	95.216	95.822	-2.3786					18	11	2	0	0	0	0.027461	1	8678	8678		32.812	0	1	22503	+		4991	28970	3937	3946	6227	6227					-0.013342497936719155
DPIGQPARI	9	Unmodified	_DPIGQPARI_					0	0	0			REV__Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|5|1|sense	REV__Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|5|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.3057556152344	2	483.771991	965.529429	-0.53624	-0.00025942	0.46154	0.00022328	-0.074702	-3.6139E-05	483.7718088809815	51.423	0.65343	48.249	48.022	48.676	-3.1734					16	12	2	0	0	0	0.027447	1	3035	3035		24.519	0	1	41744	+		4992	28171	3938	3947	6228	6228					0.04528589646031378
DPIKLVVFLPA	11	Unmodified	_DPIKLVVFLPA_					0	0	0		ENST00000437848.1_1_1:46116879-46117065:-|nuORF;ENST00000574864.1_1_6:137221518-137222013:-|nuORF	ENST00000437848.1_1_1:46116879-46117065:-|nuORF	ENST00000437848.1_1_1:46116879-46117065:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3699340820312	2	606.373549	1210.73255	-2.264	-0.0013728	-4.3442	-0.0026342	-6.6082	-0.0040071	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.72459	1	12609	12609		20.947	0.4651	1	205770			4993	11891	3939	3948	6229	6229					0.13560894647821442
DPIKPREDW	9	Unmodified	_DPIKPREDW_					0	0	0			REV__nc|ENSG00000127022|P27824-2|CANX	REV__nc|ENSG00000127022|P27824-2|CANX	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2891845703125	2	578.293288	1154.57202	-7.6021	-0.0043963	1.2846	0.00074285	-6.3176	-0.0036534	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.65371	1	13622	13622		25.574	1.0549	1	1429200	+		4994	18804	3940	3949	6230	6230					0.0009193998362206912
DPINIDNDGE	10	Unmodified	_DPINIDNDGE_					0	0	0		tr|A0A7D6ZIK1|A0A7D6ZIK1_9CLOTATP-dependentDNAhelicaseRecGC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07310PE=4SV=1	tr|A0A7D6ZIK1|A0A7D6ZIK1_9CLOTATP-dependentDNAhelicaseRecGC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07310PE=4SV=1	tr|A0A7D6ZIK1|A0A7D6ZIK1_9CLOTATP-dependentDNAhelicaseRecGC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07310PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.7507934570312	2	551.238375	1100.4622	1.0761	0.00059319	-4.4738	-0.0024661	-3.3977	-0.0018729	551.2344624317898	143.85	0.19705	143.85	143.76	143.96	0					5	3	2	0	0	0	0.026734	1	16817	16817		39.253	0	1	10877			4995	35617	3941	3950	6231	6231					-0.08401530146238656
DPINIIPSPLV	11	Unmodified	_DPINIIPSPLV_					0	0	0		tr|A0A553SLH6|A0A553SLH6_NIACISporulationproteinSpoOMOS=NialliacirculansOX=1397GN=CEQ21_20635PE=4SV=1	tr|A0A553SLH6|A0A553SLH6_NIACISporulationproteinSpoOMOS=NialliacirculansOX=1397GN=CEQ21_20635PE=4SV=1	tr|A0A553SLH6|A0A553SLH6_NIACISporulationproteinSpoOMOS=NialliacirculansOX=1397GN=CEQ21_20635PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3417358398438	2	589.344989	1176.67542	-4.3129	-0.0025418	0.73104	0.00043083	-3.5818	-0.0021109	589.3453728975387	144.79	3.9151	143.81	141.71	145.63	-0.97299					242	78	5	0	0	0	0.70142	1	12099	12099		29.17	0	1	192050			4996	33724	3942	3951	6232	6232					0.09415427371436635
DPINRLGTSL	10	Unmodified	_DPINRLGTSL_					0	0	0			REV__ENST00000598969.5_1_19:19010490-19016602:-|nuORF	REV__ENST00000598969.5_1_19:19010490-19016602:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.7230224609375	2	543.301113	1084.58767	-1.7824	-0.00096839	2.054	0.0011159	0.27159	0.00014755	543.3015753785322	48.791	0.7306	45.683	45.451	46.181	-3.1077					23	13	2	0	0	0	0.027021	1	2767	2767		21.96	1.9631	1	68085	+		4997	28017	3943	3952	6233	6233					0.048762265006644157
DPINSIKNN	9	Unmodified	_DPINSIKNN_					0	0	0			REV__CON__Q05443	REV__CON__Q05443	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7619323730469	2	507.764363	1013.51417	-1.0595	-0.00053799	-2.2098	-0.0011221	-3.2693	-0.0016601	507.76307961190355	127.55	2.4705	126.11	125.15	127.62	-1.4357					106	48	4	0	0	0	0.46356	1	12168	12168		45.972	0.020292	1	646950	+	+	4998	16196	3944	3953	6234	6234					0.007956780581935163
DPIPVLSVLE	10	Unmodified	_DPIPVLSVLE_					0	0	0		tr|A0A7D6VXI7|A0A7D6VXI7_9CLOTDNAalkylationrepairproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08845PE=4SV=1	tr|A0A7D6VXI7|A0A7D6VXI7_9CLOTDNAalkylationrepairproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08845PE=4SV=1	tr|A0A7D6VXI7|A0A7D6VXI7_9CLOTDNAalkylationrepairproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08845PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.3467407226562	2	541.310615	1080.60668	-0.47567	-0.00025748	-3.3461	-0.0018113	-3.8218	-0.0020688	541.3107289384371	82.678	0.74188	80.382	79.887	80.629	-2.2963					19	14	2	0	0	0	0.026582	1	4656	4656		42.396	0	1	19719			4999	35284	3945	3954	6235	6235					0.06959763071722591
DPITVIEGSP	10	Unmodified	_DPITVIEGSP_					0	0	0		ENSG00000174292|ENST00000688331|TNK1	ENSG00000174292|ENST00000688331|TNK1	ENSG00000174292|ENST00000688331|TNK1	MULTI-MSMS	OvCa99_classI_Rep5	1	514.2706909179688	2	514.268947	1026.52334	1.8227	0.00093734	-0.036459	-1.875E-05	1.7862	0.00091859	514.2687349526767	122.33	1.054	122.33	121.99	123.04	0					42	22	3	0	0	0	0.41408	1	14101	14101		66.429	0	1	1182800			5000	7454	3946	3955	6236	6236					0.011140266238726326
DPKCLPLKIP	10	Unmodified	_DPKCLPLKIP_					0	0	0			REV__ENST00000270357.9_2_2:241517616-241518690:+|nuORF	REV__ENST00000270357.9_2_2:241517616-241518690:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.8245849609375	2	562.330827	1122.6471	-0.25643	-0.0001442	1.9983	0.0011237	1.7418	0.00097949	562.3327770981548	41.895	0.47503	41.895	41.681	42.156	0					22	10	3	0	0	0	0.027021	1	2635	2635		15.642	0.97771	1	998460	+		5001	24069	3947	3956	6237	6237					0.09068406190476708
DPKDLEPRA	9	Unmodified	_DPKDLEPRA_					0	0	0		nc|ENSG00000149541|O94766-2|B3GAT3;ENST00000532585.5_1_11:62383175-62388587:-|nuORF;ENSG00000149541|ENST00000265471|B3GAT3;ENST00000471720.1_1_3:160170509-160171103:+|nuORF	nc|ENSG00000149541|O94766-2|B3GAT3	nc|ENSG00000149541|O94766-2|B3GAT3	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.8419799804688	2	520.772188	1039.52982	0.29504	0.00015365	-0.75437	-0.00039286	-0.45933	-0.00023921	520.7718600977615	103.69	1.0475	102.26	101.97	103.02	-1.4347					40	19	3	0	0	0	0.027426	1	7198	7198		47.657	0	1	99906			5002	5469	3948	3957	6238	6238					0.01163964575243881
DPKEKLIT	8	Unmodified	_DPKEKLIT_					0	0	0			REV__chr12:24894475-24948927|288|10.02|0.12|6.44|-|ENST00000546285|BCAT1,BCAT1	REV__chr12:24894475-24948927|288|10.02|0.12|6.44|-|ENST00000546285|BCAT1,BCAT1	MULTI-SECPEP	OvCa9_classI_Rep2	2	471.29266357421875	2	472.276575	942.538597	0.30764	0.00014529	3.0281	0.0014301	3.3358	0.0015754	472.27637725994185	81.385	1.2173	79.736	79.013	80.231	-1.6485					69	23	5	0	0	0	0.028476	1	6924	6924		71.296	19.96	1	135880	+		5003	15695	3949	3958	6239	6239					0.06502938211713172
DPKLFFISK	9	Unmodified	_DPKLFFISK_					0	0	0			REV__HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|30|1|sense	REV__HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|30|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.7965087890625	2	547.815867	1093.61718	-0.47717	-0.0002614	2.7207	0.0014905	2.2436	0.0012291	548.3187781994834	90.958	0.66908	88.383	88.11	88.779	-2.575					15	12	2	0	0	0	0.027462	1	7827	7827		25.574	0	1	14544	+		5004	28250	3950	3959	6240	6240					0.07411790516789551
DPKMRWTASQL	11	Unmodified	_DPKMRWTASQL_					0	0	0		ENSG00000085511|ENST00000392142|MAP3K4;nc|ENSG00000085511|Q9Y6R4-2|MAP3K4	ENSG00000085511|ENST00000392142|MAP3K4	ENSG00000085511|ENST00000392142|MAP3K4	MULTI-MSMS	OvCa9_classI_Rep2	2	444.8948059082031	3	444.895812	1331.66561	0.47886	0.00021304	-4.1689	-0.0018547	-3.69	-0.0016417	444.89387037841243	119.71	2.218	119.53	118.91	121.12	-0.17138					107	44	4	0	0	0	0.70032	1	11531	11531		29.551	4.4248	1	224300			5005	1732	3951	3960	6241	6241					0.013039160943890238
DPKNLLLKP	9	Unmodified	_DPKNLLLKP_					0	0	0		ENSG00000101639|ENST00000506447|CEP192;nc|ENSG00000101639|Q8TEP8-2|CEP192;nc|ENSG00000101639|Q8TEP8-1|CEP192;ENST00000513432.5_1_18:13059017-13124766:+|nuORF	ENSG00000101639|ENST00000506447|CEP192	ENSG00000101639|ENST00000506447|CEP192	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.3121337890625	2	519.321317	1036.62808	0.57194	0.00029702	1.3793	0.00071628	1.9512	0.0010133	519.3218606553415	81.028	0.33458	81.028	80.827	81.162	0					11	7	2	0	0	0	0.027462	1	8315	8315		32.812	0	1	158570			5006	2192	3952	3961	6242	6242					0.11123192891091094
DPKPGPKKP	9	Unmodified	_DPKPGPKKP_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	OvCa9_classI_Rep3	3	482.285888671875	2	482.284734	962.554916	-0.49751	-0.00023994	0.076092	3.6698E-05	-0.42142	-0.00020325	482.2847079453586	89.393	3.1361	87.262	86.846	89.982	-2.1309					129	61	4	0	0	0	0.53957	1	5514	5514		38.806	1.647	1	1830700			5007	3261	3953	3962	6243	6243					0.07214064168465484
DPKRDGETI	9	Unmodified	_DPKRDGETI_					0	0	0			REV__ENSG00000128272|ENST00000674920|ATF4	REV__ENSG00000128272|ENST00000674920|ATF4	MULTI-MSMS	OvCa9_classI_Rep2	2	515.7581787109375	2	515.76182	1029.50909	0.89792	0.00046311	-3.9799	-0.0020527	-3.082	-0.0015896	515.7596346022517	126.45	1.4315	126.22	125.75	127.18	-0.2359					75	28	3	0	0	0	0.44568	1	12342	12342		47.657	0.8909	1	408360	+		5008	18849	3954	3963	6244	6244					-0.004486258044153146
DPKSVIIPL	9	Unmodified	_DPKSVIIPL_					0	0	0		ENSG00000143669|ENST00000389793|LYST;nc|ENSG00000143669|Q99698-3|LYST;ENST00000465349.5_1_1:235954948-235996891:-|nuORF;nc|ENSG00000143669|Q99698-2|LYST;ENST00000489585.5_1_1:235926109-235996891:-|nuORF	ENSG00000143669|ENST00000389793|LYST	ENSG00000143669|ENST00000389793|LYST	MULTI-MSMS	OvCa99_classI_Rep5	1	491.30377197265625	2	491.302593	980.590633	1.0453	0.00051357	1.2012	0.00059014	2.2465	0.0011037	491.3030450401028	144.72	0.81967	144.72	144.45	145.27	0					35	16	4	0	0	0	0.48324	1	16911	16911		44.117	1.6423	1	270290			5009	5084	3955	3964	6245	6245					0.09956101625471092
DPKTFYDLSSI	11	Unmodified	_DPKTFYDLSSI_					0	0	0			REV__nc|ENSG00000128881|Q6IQ55-3|TTBK2	REV__nc|ENSG00000128881|Q6IQ55-3|TTBK2	MULTI-SECPEP	OvCa9_classI_Rep2	2	643.3713989257812	2	643.319168	1284.62378	0.30748	0.00019781	-0.54417	-0.00035007	-0.23669	-0.00015227	643.318833591345	91.165	1.0547	89.929	89.587	90.642	-1.2355					43	19	3	0	0	0	0.025466	1	8057	8057		56.434	6.8977	1	46716	+		5010	18874	3956	3965	6246	6246					-0.007143611131368743
DPKTFYDLSSI	11	Unmodified	_DPKTFYDLSSI_					0	0	0			REV__nc|ENSG00000128881|Q6IQ55-3|TTBK2	REV__nc|ENSG00000128881|Q6IQ55-3|TTBK2	MULTI-SECPEP	OvCa9_classI_Rep3	3	643.373291015625	2	643.319168	1284.62378	-1.2538	-0.00080659	1.258	0.00080929	0.0041927	2.6972E-06	643.3199356987263	91.917	0.50056	89.893	89.634	90.135	-2.0241					24	9	3	0	0	0	0.025822	1	5784	5784		63.534	10.445	1	99843	+		5011	18874	3956	3965	6247	6247					-0.007143611131368743
DPLAFHVQL	9	Unmodified	_DPLAFHVQL_					0	0	0			REV__nc|ENSG00000073146|Q9BXT6-5|MOV10L1	REV__nc|ENSG00000073146|Q9BXT6-5|MOV10L1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.31201171875	2	520.282192	1038.54983	1.743	0.00090687	-4.4566	-0.0023187	-2.7136	-0.0014118	520.2807070334118	79.99	0.16077	79.99	79.87	80.031	0					6	3	2	0	0	0	0.027462	1	8170	8170		30.504	0.6621	1	1504500	+		5012	16933	3957	3966	6248	6248					0.032097603058673485
DPLAFHVQL	9	Unmodified	_DPLAFHVQL_					0	0	0			REV__nc|ENSG00000073146|Q9BXT6-5|MOV10L1	REV__nc|ENSG00000073146|Q9BXT6-5|MOV10L1	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.3114013671875	2	520.282192	1038.54983	-0.85468	-0.00044467	1.3572	0.00070612	0.50251	0.00026145	520.2824245877052	83.938	0.84679	81.677	81.611	82.457	-2.261					23	17	2	0	0	0	0.027462	1	4840	4840		38.806	8.9646	1	201300	+		5013	16933	3957	3966	6249	6249					0.032097603058673485
DPLAGYKRHQ	10	Unmodified	_DPLAGYKRHQ_					0	0	0			REV__ENSG00000089289|ENST00000356413|IGBP1	REV__ENSG00000089289|ENST00000356413|IGBP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	591.8561401367188	2	592.812179	1183.60981	0.025675	1.522E-05	-3.186	-0.0018887	-3.1603	-0.0018735	592.8103570989641	39.615	0.59519	36.677	36.433	37.029	-2.9379					18	11	2	0	0	0	0.026956	1	1655	1655		26.693	11.828	1	17571	+		5014	17206	3958	3967	6250	6250					0.025344509690967243
DPLAILSEIS	10	Unmodified	_DPLAILSEIS_					0	0	0		ENSG00000125733|ENST00000313244|TRIP10	ENSG00000125733|ENST00000313244|TRIP10	ENSG00000125733|ENST00000313244|TRIP10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.3278198242188	2	529.292422	1056.57029	1.4293	0.00075651	-3.7281	-0.0019733	-2.2988	-0.0012168	529.2902794868747	130.04	1.528	128.56	128.02	129.55	-1.4779					80	30	3	0	0	0	0.026553	1	12522	12522		56.721	19.562	1	59925			5015	3727	3959	3968	6251	6251					0.0442688617499698
DPLDFQVPV	9	Unmodified	_DPLDFQVPV_					0	0	0			REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	REV__nc|ENSG00000133454|Q8IUG5-2|MYO18B	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.75146484375	2	515.266207	1028.51786	0.42844	0.00022076	-0.55152	-0.00028418	-0.12309	-6.3422E-05	515.2659175620944	132.16	0.84549	131.03	130.79	131.63	-1.1249					33	16	3	0	0	0	0.027462	1	10586	10586		35.618	0	1	43080	+		5016	19147	3960	3969	6252	6252					0.004743478320506256
DPLERNVDL	9	Unmodified	_DPLERNVDL_					0	0	0		sp|P16729|MCP_HCMVAMajorcapsidproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=MCPPE=1SV=1;sp|F5HGT1|MCP_HCMVMMajorcapsidproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=MCPPE=3SV=1	sp|P16729|MCP_HCMVAMajorcapsidproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=MCPPE=1SV=1	sp|P16729|MCP_HCMVAMajorcapsidproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=MCPPE=1SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.8257446289062	2	535.77747	1069.54039	-0.30192	-0.00016176	-0.39024	-0.00020908	-0.69216	-0.00037085	535.7772794140552	89.549	0.8448	86.974	86.656	87.501	-2.575					26	16	2	0	0	0	0.027418	1	7674	7674		62.107	1.8135	1	74813			5017	32876	3961	3970	6253	6253					0.008399472296559907
DPLFRLPE	8	Unmodified	_DPLFRLPE_					0	0	0			REV__nc|ENSG00000151366|O95298-3|NDUFC2	REV__nc|ENSG00000151366|O95298-3|NDUFC2	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.7868957519531	2	493.768917	985.523281	0.6355	0.00031379	-0.35698	-0.00017626	0.27852	0.00013752	493.7686646401239	96.364	0.93626	95.336	95.063	95.999	-1.0281					30	18	2	0	0	0	0.028476	1	8749	8749		27.882	3.6795	1	59186	+		5018	20227	3962	3971	6254	6254					0.0299407141451411
DPLGRTLEI	9	Unmodified	_DPLGRTLEI_					0	0	0		CON__P01030	CON__P01030	CON__P01030	MULTI-MSMS	OvCa99_classI_Rep5	1	507.28521728515625	2	507.284931	1012.55531	2.3897	0.0012123	3.3632	0.0017061	5.753	0.0029184	507.28477895798306	80.2	0.80017	80.2	79.944	80.744	0					56	18	4	0	0	0	0.21231	1	8207	8207		74.255	5.7703	1	4515700		+	5019	613	3963	3972	6255	6255					0.04953439097653245
DPLIEVTI	8	Unmodified	_DPLIEVTI_					0	0	0			REV__ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	REV__ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.26739501953125	2	450.257851	898.501149	-0.58101	-0.0002616	-3.7608	-0.0016933	-4.3418	-0.001955	450.25556287227704	72.332	0.29355	68.936	68.667	68.96	-3.3961					6	5	2	0	0	0	0.028476	1	5536	5536		57.811	0	1	13855	+		5020	15573	3964	3973	6256	6256					0.047838469461112254
DPLIIQDEYVQ	11	Unmodified	_DPLIIQDEYVQ_					0	0	0			REV__MID1-SPAG17|2|fusion	REV__MID1-SPAG17|2|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	444.89471435546875	3	444.894242	1331.6609	0.47887	0.00021304	-0.64128	-0.0002853	-0.16241	-7.2257E-05	444.89387037841243	119.71	2.218	119.53	118.91	121.12	-0.17138					107	44	4	0	0	0	0.57194	1	11525	11525		47.228	3.5769	1	224300	+		5021	20441	3965	3974	6257	6257					0.00833310432608414
DPLIIQDEYVQ	11	Unmodified	_DPLIIQDEYVQ_					0	0	0			REV__MID1-SPAG17|2|fusion	REV__MID1-SPAG17|2|fusion	MULTI-MATCH	OvCa9_classI_Rep3	3		3	444.894242	1331.6609	1.4388	0.00064013	-1.8174	-0.00080855	-0.37855	-0.00016842	444.8934334114159	120.47	0.29511	119.44	119.17	119.46	-1.0271	-0.04789	-0.0012153	NaN	47.228	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	366210	+		5022	20441	3965	3974							0.00833310432608414
DPLKKKRK	8	Unmodified	_DPLKKKRK_					0	0	0			REV__nc|ENSG00000156931|Q8N3P4-2|VPS8	REV__nc|ENSG00000156931|Q8N3P4-2|VPS8	MULTI-MSMS	OvCa99_classI_Rep5	1	506.8366394042969	2	506.834926	1011.6553	1.4511	0.00073548	1.0192	0.00051655	2.4703	0.001252	506.83527840453354	91.202	0.6067	91.202	90.976	91.582	0					34	14	4	0	0	0	0.7043	1	9818	9818		42.474	3.6683	1	2131100	+		5023	20505	3966	3975	6258	6258					0.14993721222128897
DPLKKKRK	8	Unmodified	_DPLKKKRK_					0	0	0			REV__nc|ENSG00000156931|Q8N3P4-2|VPS8	REV__nc|ENSG00000156931|Q8N3P4-2|VPS8	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	506.834926	1011.6553	1.4511	0.00073548	1.0192	0.00051655	2.4703	0.001252	506.83527840453354	91.202	0.6067	91.202	90.976	91.582	0	0	0	NaN	42.474	34	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2131100	+		5024	20505	3966	3975							0.14993721222128897
DPLLLRCKLLP	11	Unmodified	_DPLLLRCKLLP_					0	0	0		ENSG00000110446|ENST00000227880|SLC15A3;ENST00000543406.1_1_11:60708255-60708741:-|nuORF	ENSG00000110446|ENST00000227880|SLC15A3	ENSG00000110446|ENST00000227880|SLC15A3	MULTI-MSMS	OvCa9_classI_Rep3	3	640.8906860351562	2	640.891583	1279.76861	-0.17161	-0.00010998	-2.3574	-0.0015108	-2.529	-0.0016208	640.8899625944715	132.12	1.093	131	130.64	131.73	-1.1249					68	21	4	0	0	0	0.61983	1	10538	10538		42.864	2.0861	1	271940			5025	2778	3967	3976	6259	6259					0.13992028553002456
DPLPDPLKV	9	Unmodified	_DPLPDPLKV_					0	0	0		nc|ENSG00000130479|Q66K74-2|MAP1S;ENSG00000130479|ENST00000324096|MAP1S	nc|ENSG00000130479|Q66K74-2|MAP1S	nc|ENSG00000130479|Q66K74-2|MAP1S	MULTI-SECPEP	OvCa9_classI_Rep3	3	497.8300476074219	2	497.2844	992.554247	-0.80154	-0.00039859	0.62832	0.00031245	-0.17322	-8.6141E-05	497.28438372302867	90.314	1.7279	88.233	87.953	89.68	-2.0805					71	33	4	0	0	0	0.027447	1	5598	5598		47.657	3.5405	1	330770			5026	3988	3968	3977	6260	6260					0.05767224728754172
DPLPDPLKV	9	Unmodified	_DPLPDPLKV_					0	0	0		nc|ENSG00000130479|Q66K74-2|MAP1S;ENSG00000130479|ENST00000324096|MAP1S	nc|ENSG00000130479|Q66K74-2|MAP1S	nc|ENSG00000130479|Q66K74-2|MAP1S	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.83074951171875	2	497.2844	992.554247	-0.3242	-0.00016122	-0.069475	-3.4549E-05	-0.39367	-0.00019577	497.2839904918973	90.816	1.5283	88.241	87.956	89.484	-2.575					68	29	4	0	0	0	0.027441	1	7837	7837		58.782	3.2778	1	254930			5027	3988	3968	3977	6261	6261					0.05767224728754172
DPLPIWIG	8	Unmodified	_DPLPIWIG_					0	0	0		tr|A0A553SM60|A0A553SM60_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_21885PE=4SV=1	tr|A0A553SM60|A0A553SM60_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_21885PE=4SV=1	tr|A0A553SM60|A0A553SM60_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_21885PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	454.7649230957031	2	455.755278	909.496004	1.5616	0.00071169	-3.7897	-0.0017272	-2.2282	-0.0010155	455.75345549728047	79.293	0.48119	79.293	78.955	79.436	0					24	11	3	0	0	0	0.028476	1	8077	8077		39.021	0	1	1701200			5028	33805	3969	3978	6262	6262					0.03763587874141194
DPLPLLARA	9	Unmodified	_DPLPLLARA_					0	0	0			REV__ENST00000488342.5_1_2:165365032-165477819:-|nuORF	REV__ENST00000488342.5_1_2:165365032-165477819:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.2696838378906	2	483.292559	964.570566	-0.25383	-0.00012268	-1.7931	-0.00086657	-2.0469	-0.00098924	483.2915245847113	87.091	1.1012	84.464	84.152	85.253	-2.6269					37	21	2	0	0	0	0.027462	1	7431	7431		10.866	0	1	123100	+		5029	18232	3970	3979	6263	6263					0.08686350685502475
DPLRAVVLYL	10	Unmodified	_DPLRAVVLYL_					0	0	0		ENST00000497437.1_1_1:43279512-43282215:-|nuORF	ENST00000497437.1_1_1:43279512-43282215:-|nuORF	ENST00000497437.1_1_1:43279512-43282215:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.843505859375	2	579.847699	1157.68084	-7.0884	-0.0041102	1.1783	0.00068321	-5.9101	-0.003427	579.8482379008053	161.9	0.83498	160.28	159.97	160.81	-1.6239					34	20	2	0	0	0	0.71192	1	16005	16005		29.15	5.6269	1	56400			5030	12805	3971	3980	6264	6264					0.10831150953913493
DPLRLKKKP	9	Unmodified	_DPLRLKKKP_					0	0	0			REV__nc|ENSG00000178177|Q8N3X6|LCORL	REV__nc|ENSG00000178177|Q8N3X6|LCORL	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.3118286132812	2	547.855858	1093.69716	1.6677	0.00091365	0.052775	2.8913E-05	1.7205	0.00094257	547.8556956876356	126.23	0.56718	126.23	125.99	126.56	0					22	11	3	0	0	0	0.027462	1	14635	14635		34.173	14.813	1	104020	+		5031	29027	3972	3981	6265	6265					0.15406276910653105
DPLVENVHI	9	Unmodified	_DPLVENVHI_					0	0	0			REV__ZCCHC18|p.Q67H|1|0.58|ENSG00000166707|chrX:104114312-104114312|A/T|missense_variant	REV__ZCCHC18|p.Q67H|1|0.58|ENSG00000166707|chrX:104114312-104114312|A/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.360107421875	2	518.277106	1034.53966	0.028622	1.4834E-05	1.4354	0.00074392	1.464	0.00075875	518.2771109143213	135.56	0.24625	135.33	135.18	135.42	-0.22696					6	4	2	0	0	0	0.027462	1	13450	13450		21.96	0	1	7973.4	+		5032	32765	3973	3982	6266	6266					0.023771525806068894
DPLVGNVQTL	10	Unmodified	_DPLVGNVQTL_					0	0	0			REV__ZCCHC12|p.R191Sfs*3|1|0.17|ENSG00000174460|chrX:118825816-118825817|-/T|frameshift_variant	REV__ZCCHC12|p.R191Sfs*3|1|0.17|ENSG00000174460|chrX:118825816-118825817|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	528.2904052734375	2	528.290214	1054.56587	-2.0692	-0.0010931	1.8424	0.00097333	-0.22677	-0.0001198	528.2910380976961	119.39	1.0343	119.22	118.81	119.84	-0.17137					43	20	3	0	0	0	0.58067	1	11503	11503		44.377	2.9506	1	94142	+		5033	21834	3974	3983	6267	6267					0.04077421752117516
DPLVLMVLL	9	Unmodified	_DPLVLMVLL_					0	0	0		chr17:50186922-50189377|136|540.86|0.66|9.68|-|1|COL1A1,COL1A1|1;chr17:50187537-50189377|111|676.42|0.14|12.27|-|1|COL1A1,COL1A1|1;ENST00000225964.9_1_17:48265286-48266811:-|nuORF	chr17:50186922-50189377|136|540.86|0.66|9.68|-|1|COL1A1,COL1A1|1	chr17:50186922-50189377|136|540.86|0.66|9.68|-|1|COL1A1,COL1A1|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.81243896484375	2	506.809196	1011.60384	0.31561	0.00015995	2.3033	0.0011673	2.6189	0.0013273	506.81045586251577	89.749	2.4253	87.174	86.704	89.129	-2.575					167	47	5	0	0	0	0.44294	1	7784	7784		47.916	8.6628	1	8441000			5034	388	3975	3984	6268	6268					0.09850216413224189
DPMEYYVN	8	Unmodified	_DPMEYYVN_					0	0	0			REV__ENSG00000181222|ENST00000674977|POLR2A	REV__ENSG00000181222|ENST00000674977|POLR2A	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.2832641601562	2	515.71295	1029.41135	1.0043	0.00051793	-0.8036	-0.00041443	0.20069	0.0001035	516.2129671611239	106.35	0.20857	105.09	105.01	105.22	-1.267					5	3	2	0	0	0	0.028476	1	7511	7511		19.36	3.7182	1	5402	+		5035	22222	3976	3985	6269	6269					-0.10218150724767838
DPNNSSFVKN	10	Unmodified	_DPNNSSFVKN_					0	0	0		tr|A0A553SIB9|A0A553SIB9_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_14555PE=3SV=1	tr|A0A553SIB9|A0A553SIB9_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_14555PE=3SV=1	tr|A0A553SIB9|A0A553SIB9_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_14555PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	560.29345703125	2	561.264727	1120.5149	1.5076	0.00084614	4.3315	0.0024311	5.8391	0.0032773	561.2668417807753	89.34	1.3908	86.737	86.434	87.825	-2.6027					47	27	3	0	0	0	0.026994	1	7624	7624		25.574	0	1	81277			5036	33364	3977	3986	6270	6270					-0.0405352729274
DPNPPGTAPDM	11	Unmodified	_DPNPPGTAPDM_					0	0	0		ENST00000514049.5_1_15:67636411-67663825:+|nuORF	ENST00000514049.5_1_15:67636411-67663825:+|nuORF	ENST00000514049.5_1_15:67636411-67663825:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.2991943359375	2	556.239864	1110.46517	1.4874	0.00082733	-3.4439	-0.0019157	-1.9566	-0.0010883	556.2376939798193	149.88	0.49692	149.88	149.65	150.14	0					15	9	2	0	0	0	0.025406	1	17576	17576		38.754	5.9412	1	37848			5037	13024	3978	3987	6271	6271					-0.0856397829306843
DPNRHATLT	9	Unmodified	_DPNRHATLT_					0	0	0		nc|ENSG00000178217|Q5SQS7|SH2D4B;ENSG00000178217|ENST00000646907|SH2D4B	nc|ENSG00000178217|Q5SQS7|SH2D4B	nc|ENSG00000178217|Q5SQS7|SH2D4B	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.7798156738281	2	512.762155	1023.50976	1.5112	0.00077491	2.4938	0.0012787	4.0051	0.0020536	512.7634977787668	130.24	0.57008	130.24	129.96	130.53	0					19	11	3	0	0	0	0.027455	1	15112	15112		34.173	0	1	74465			5038	7741	3979	3988	6272	6272					-0.0010578636473610459
DPNSHLLEA	9	Unmodified	_DPNSHLLEA_					0	0	0		ENSG00000107731|ENST00000335350|UNC5B	ENSG00000107731|ENST00000335350|UNC5B	ENSG00000107731|ENST00000335350|UNC5B	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.2723083496094	2	498.243264	994.471974	0.96583	0.00048122	1.6988	0.00084642	2.6646	0.0013276	498.24410048472464	83.428	0.42488	83.428	83.204	83.629	0					15	9	2	0	0	0	0.027462	1	8646	8646		21.96	6.3181	1	112920			5039	2610	3980	3989	6273	6273					-0.025482973501880224
DPNYGIKKI	9	Unmodified	_DPNYGIKKI_					0	0	0			REV__nc|ENSG00000196205|Q5VTE0|EEF1A1P5	REV__nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	OvCa99_classI_Rep5	1	524.2976684570312	2	524.295299	1046.57605	1.5124	0.00079295	0.90863	0.00047639	2.421	0.0012693	524.2957865301821	116.57	1.6536	116.57	116.23	117.88	0					78	35	5	0	0	0	0.083631	2	13327	13327;13378		101.6	11	1	13561000	+		5040	29074	3981	3990	6274;6275	6274					0.05462029477325814
DPNYGIKKI	9	Unmodified	_DPNYGIKKI_					0	0	0			REV__nc|ENSG00000196205|Q5VTE0|EEF1A1P5	REV__nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	OvCa9_classI_Rep2	2	524.2924194335938	2	524.295299	1046.57605	-0.92225	-0.00048353	1.1699	0.00061337	0.24765	0.00012984	524.2957443271708	116.92	1.684	116.79	116.47	118.15	-0.12869					60	33	4	0	0	0	0.22621	1	11193	11193		71.877	1.0613	1	635800	+		5041	29074	3981	3990	6276	6276					0.05462029477325814
DPNYTGLQSHL	11	Unmodified	_DPNYTGLQSHL_					0	0	0			REV__ENSG00000217236|ENST00000394967|SP9	REV__ENSG00000217236|ENST00000394967|SP9	MULTI-MSMS	OvCa9_classI_Rep3	3	415.5337219238281	3	415.535048	1243.58332	2.6423	0.001098	-4.4632	-0.0018546	-1.8208	-0.00075662	415.5330543801677	60.489	0.8731	57.39	57.093	57.967	-3.0993					52	25	3	0	0	0	0.72458	1	2070	2070		21.032	5.3904	1	21318	+		5042	23326	3982	3991	6277	6277					-0.028732827129033467
DPPIKIAR	8	Unmodified	_DPPIKIAR_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.P2471Lfs*35|1|0.08|ENSG00000118058|chr11:118503312-118503312|C/-|frameshift_variant;KMT2A|p.L792Sfs*31|1|0.03|ENSG00000118058|chr11:118473531-118473532|-/AAGT|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-SECPEP	OvCa99_classI_Rep5	1	454.76458740234375	2	455.279452	908.544351	2.6063	0.0011866	-0.37809	-0.00017214	2.2282	0.0010144	455.27889014463784	80.557	0.43036	80.557	80.314	80.744	0					12	9	2	0	0	0	0.028476	1	8254	8254		38.806	6.8513	1	94133			5043	3286	3983	3992	6278	6278					0.08642081514040001
DPPIKIAR	8	Unmodified	_DPPIKIAR_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.P2471Lfs*35|1|0.08|ENSG00000118058|chr11:118503312-118503312|C/-|frameshift_variant;KMT2A|p.L792Sfs*31|1|0.03|ENSG00000118058|chr11:118473531-118473532|-/AAGT|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.2702941894531	2	455.279452	908.544351	-0.68637	-0.00031249	0.51988	0.00023669	-0.16649	-7.58E-05	455.2794265962218	45.503	1.0981	42.464	42.23	43.328	-3.0385					47	20	3	0	0	0	0.028476	1	2399	2399		8.2313	0	1	166200			5044	3286	3983	3992	6279	6279					0.08642081514040001
DPPLSPTISVT	11	Unmodified	_DPPLSPTISVT_					0	0	0			REV__ENST00000437600.8_1_7:101926770-101927016:+|nuORF	REV__ENST00000437600.8_1_7:101926770-101927016:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.3236694335938	2	563.803154	1125.59175	0.29426	0.0001659	2.2305	0.0012576	2.5248	0.0014235	563.8042949496955	55.282	0.50901	51.987	51.751	52.26	-3.2944					16	9	2	0	0	0	0.025638	1	3500	3500		37.812	2.6108	1	29810	+		5045	25795	3984	3993	6280	6280					0.0339827120371865
DPPPPKARLTL	11	Unmodified	_DPPPPKARLTL_					0	0	0			REV__ENSG00000151491|ENST00000281172|EPS8	REV__ENSG00000151491|ENST00000281172|EPS8	MULTI-MSMS	OvCa9_classI_Rep3	3	602.8562622070312	2	602.856055	1203.69756	2.2611	0.0013631	-2.3303	-0.0014048	-0.069175	-4.1703E-05	602.8544543064842	71.261	1.6459	68.658	68.074	69.72	-2.6023					101	32	5	0	0	0	0.31264	1	3325	3325		67.494	9.2637	1	817540	+		5046	20237	3985	3994	6281	6281					0.10385651839851562
DPQHWLSRHTE	11	Unmodified	_DPQHWLSRHTE_					0	0	0		nc|ENSG00000182795|Q9BW04-2|SARG;ENSG00000182795|ENST00000359470|C1orf116	nc|ENSG00000182795|Q9BW04-2|SARG	nc|ENSG00000182795|Q9BW04-2|SARG	MULTI-MSMS	OvCa99_classI_Rep5	1	469.22589111328125	3	469.225097	1404.65346	-0.12158	-5.7049E-05	-0.5412	-0.00025395	-0.66278	-0.000311	469.2247970959854	42.905	0.76917	42.905	42.709	43.478	0					40	17	3	0	0	0	0.70315	1	2791	2791		28.577	1.023	1	2046200			5047	8027	3986	3995	6282	6282					-0.03267984324475037
DPQISLIKW	9	Unmodified	_DPQISLIKW_					0	0	0		tr|A0A553SJL4|A0A553SJL4_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_17065PE=4SV=1	tr|A0A553SJL4|A0A553SJL4_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_17065PE=4SV=1	tr|A0A553SJL4|A0A553SJL4_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_17065PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	550.7273559570312	2	550.310949	1098.60735	0.78482	0.00043189	-1.5341	-0.00084423	-0.74929	-0.00041234	550.3097815194845	121.02	1.7631	120	119.56	121.32	-1.0271					59	33	3	0	0	0	0.027462	1	9200	9200		11.511	0	1	45890			5048	33514	3987	3996	6283	6283					0.06198602511426543
DPQKREII	8	Unmodified	_DPQKREII_					0	0	0			REV__HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|27|1|sense	REV__HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|27|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.9444580078125	2	499.785099	997.555644	-1.1135	-0.00055651	0.35552	0.00017768	-0.75799	-0.00037883	499.7850913995788	81.478	0.77695	78.767	78.494	79.271	-2.7106					34	15	3	0	0	0	0.028476	1	6728	6728		37.159	1.5408	1	187840	+		5049	28240	3988	3997	6284	6284					0.05676858817525954
DPQLWLIL	8	Unmodified	_DPQLWLIL_					0	0	0			REV__nc|ENSG00000211810|P04437|TRAV29DV5	REV__nc|ENSG00000211810|P04437|TRAV29DV5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.7674560546875	2	499.289485	996.564418	-0.6994	-0.00034921	0.59746	0.0002983	-0.10195	-5.0901E-05	499.2895764606517	104.33	1.1431	102.21	101.9	103.05	-2.1192					33	21	2	0	0	0	0.028476	1	9490	9490		35.201	0	1	48440	+		5050	29121	3989	3998	6285	6285					0.06599832453991894
DPRAGALCP	9	Unmodified	_DPRAGALCP_					0	0	0		ENST00000558936.5_1_14:24739166-24739214:-|nuORF	ENST00000558936.5_1_14:24739166-24739214:-|nuORF	ENST00000558936.5_1_14:24739166-24739214:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.2247619628906	2	450.22382	898.433086	0.46165	0.00020785	0.60493	0.00027235	1.0666	0.0004802	450.2240094327952	98.62	1.9451	96.242	95.921	97.866	-2.3786					76	37	3	0	0	0	0.53957	1	8764	8764		38.806	1.647	1	455830			5051	13708	3990	3999	6286	6286					-0.020193011855667464
DPRAGALCP	9	Unmodified	_DPRAGALCP_					0	0	0		ENST00000558936.5_1_14:24739166-24739214:-|nuORF	ENST00000558936.5_1_14:24739166-24739214:-|nuORF	ENST00000558936.5_1_14:24739166-24739214:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	450.22382	898.433086	-0.30066	-0.00013536	1.1228	0.00050551	0.82213	0.00037014	450.2241978847434	97.804	1.9291	96.045	95.62	97.55	-1.7595	-0.098652	0.00035156	NaN	38.806	85	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	459770			5052	13708	3990	3999							-0.020193011855667464
DPRIIRLI	8	Unmodified	_DPRIIRLI_					0	0	0		chr11:6611452-6612064|429|18.5|0.75|4.62|-|ENST00000527248|TAF10,TAF10;ENSG00000166337|ENST00000299424|TAF10	chr11:6611452-6612064|429|18.5|0.75|4.62|-|ENST00000527248|TAF10,TAF10	chr11:6611452-6612064|429|18.5|0.75|4.62|-|ENST00000527248|TAF10,TAF10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.2617492675781	2	498.321651	994.62875	-0.11627	-5.7939E-05	0.039737	1.9802E-05	-0.076531	-3.8137E-05	498.321417466639	78.408	0.65757	75.592	75.409	76.067	-2.8165					19	13	2	0	0	0	0.028476	1	6363	6363		17.365	0	1	48053			5053	300	3991	4000	6287	6287					0.13122032330807087
DPRKYLGPAR	10	Unmodified	_DPRKYLGPAR_					0	0	0		tr|A0A553SI61|A0A553SI61_NIACIFructose-bisphosphatealdolaseOS=NialliacirculansOX=1397GN=CEQ21_14260PE=4SV=1	tr|A0A553SI61|A0A553SI61_NIACIFructose-bisphosphatealdolaseOS=NialliacirculansOX=1397GN=CEQ21_14260PE=4SV=1	tr|A0A553SI61|A0A553SI61_NIACIFructose-bisphosphatealdolaseOS=NialliacirculansOX=1397GN=CEQ21_14260PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.8316040039062	2	586.830372	1171.64619	-0.56371	-0.0003308	0.040302	2.365E-05	-0.5234	-0.00030715	586.8304383801809	58.645	1.4941	55.253	54.902	56.396	-3.392					74	29	3	0	0	0	0.67931	1	3897	3897		32.812	1.2826	1	1176200			5054	33348	3992	4001	6288	6288					0.06723327865779538
DPRLFKKRR	9	Unmodified	_DPRLFKKRR_					0	0	0		ENSG00000134259|ENST00000369512|NGF	ENSG00000134259|ENST00000369512|NGF	ENSG00000134259|ENST00000369512|NGF	MULTI-SECPEP	OvCa9_classI_Rep2	2	405.7442626953125	3	405.919279	1214.73601	1.007	0.00040876	-0.39229	-0.00015924	0.61469	0.00024952	406.25495354114696	73.719	0.94579	71.319	70.792	71.738	-2.3999					24	17	2	0	0	0	0.027462	1	5975	5975		35.152	0	1	9767.3			5055	4274	3993	4002	6289	6289					0.1372300226501011
DPRLLQESF	9	Unmodified	_DPRLLQESF_					0	0	0		SPATA31A6|p.Q1233Vfs*61|1|0.15|ENSG00000185775|chr9:42189397-42189401|AACAG/-|frameshift_variant;ENSG00000185775|ENST00000332857|SPATA31A6	SPATA31A6|p.Q1233Vfs*61|1|0.15|ENSG00000185775|chr9:42189397-42189401|AACAG/-|frameshift_variant	SPATA31A6|p.Q1233Vfs*61|1|0.15|ENSG00000185775|chr9:42189397-42189401|AACAG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	552.7858276367188	2	552.787838	1103.56112	1.7554	0.00097038	-4.2643	-0.0023572	-2.5088	-0.0013869	552.7854142273841	29.865	0.63211	27.155	26.975	27.607	-2.7097					29	12	3	0	0	0	0.5811	1	773	773		34.173	1.3601	1	49044			5056	8282	3994	4003	6290	6290					0.013485376093285595
DPRPILLLN	9	Unmodified	_DPRPILLLN_					0	0	0		tr|A0A553SM29|A0A553SM29_NIACIPhosphoenolpyruvatecarboxylaseOS=NialliacirculansOX=1397GN=ppcPE=3SV=1	tr|A0A553SM29|A0A553SM29_NIACIPhosphoenolpyruvatecarboxylaseOS=NialliacirculansOX=1397GN=ppcPE=3SV=1	tr|A0A553SM29|A0A553SM29_NIACIPhosphoenolpyruvatecarboxylaseOS=NialliacirculansOX=1397GN=ppcPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	525.8195190429688	2	525.818941	1049.62333	-1.4795	-0.00077795	1.0475	0.0005508	-0.432	-0.00022715	525.8193652814851	93.871	1.5687	91.909	91.476	93.045	-1.9617					67	30	4	0	0	0	0.18887	2	6037	6037;6050		78.264	15.366	1	850070			5057	33790	3995	4004	6291;6292	6291					0.1005030874835029
DPRRLRGK	8	Unmodified	_DPRRLRGK_					0	0	0		ENST00000367537.7_2_1:183441704-183471394:+|nuORF;ENST00000507691.6_1_1:183441704-183470323:+|nuORF;ENST00000367538.1_1_1:183441704-183485127:+|nuORF	ENST00000367537.7_2_1:183441704-183471394:+|nuORF	ENST00000367537.7_2_1:183441704-183471394:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.2786865234375	2	499.304324	996.594095	-0.44193	-0.00022066	-3.2892	-0.0016423	-3.7312	-0.001863	499.30256583115846	48.797	0.61409	48.797	48.372	48.986	0					18	13	2	0	0	0	0.028476	1	3587	3587		11.511	0	1	176950			5058	10847	3996	4005	6293	6293					0.09566209242700552
DPRVTAKYD	9	Unmodified	_DPRVTAKYD_					0	0	0		ENSG00000159792|ENST00000291041|PSKH1	ENSG00000159792|ENST00000291041|PSKH1	ENSG00000159792|ENST00000291041|PSKH1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.8182983398438	2	532.772188	1063.52982	-0.14393	-7.6685E-05	-0.82292	-0.00043843	-0.96686	-0.00051511	532.7717667042042	140.55	1.581	139.06	138.41	139.99	-1.4952					26	13	3	0	0	0	0.027462	1	13660	13660		34.173	17.699	1	49267			5059	6029	3997	4006	6294	6294					0.0005996457523451681
DPRWILES	8	Unmodified	_DPRWILES_					0	0	0			REV__ENSG00000101204|ENST00000370263|CHRNA4	REV__ENSG00000101204|ENST00000370263|CHRNA4	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.8175048828125	2	508.263999	1014.51345	0.090395	4.5945E-05	-4.0828	-0.0020751	-3.9924	-0.0020292	508.26178536609353	31.782	0.89009	31.782	31.264	32.154	0					21	17	2	0	0	0	0.028476	1	1375	1375		11.511	0	1	133060	+		5060	17481	3998	4007	6295	6295					0.006768834091417375
DPSAGGGG	8	Unmodified	_DPSAGGGG_					0	0	0			REV__ENSG00000171532|ENST00000302584|NEUROD2	REV__ENSG00000171532|ENST00000302584|NEUROD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	616.322998046875	1	617.252545	616.245269	2.1413	0.0013217	0.57267	0.00035348	2.714	0.0016752	617.2524758101932	82.511	0.60108	82.511	82.264	82.865	0					24	13	3	0	0	0	0.028476	1	8568	8568		18.324	0.95945	1	527600	+		5061	21624	3999	4008	6296	6296					-0.078204161184658
DPSAKYLRLL	10	Unmodified	_DPSAKYLRLL_					0	0	0			REV__ENSG00000196961|ENST00000354293|AP2A1	REV__ENSG00000196961|ENST00000354293|AP2A1	MULTI-MSMS	OvCa9_classI_Rep2	2	588.3450317382812	2	588.342781	1174.67101	1.3223	0.00077794	-2.3402	-0.0013769	-1.018	-0.00059892	588.3413084231856	87.79	1.1281	86.359	86.04	87.168	-1.4311					43	22	2	0	0	0	0.45822	1	7674	7674		60.118	0.18749	1	513000	+		5062	22880	4000	4009	6297	6297					0.09065962948511697
DPSGSRVGWR	10	Unmodified	_DPSGSRVGWR_					0	0	0			REV__nc|ENSG00000187634|Q96NU1-2|SAMD11	REV__nc|ENSG00000187634|Q96NU1-2|SAMD11	MULTI-SECPEP	OvCa9_classI_Rep4_	4	558.3627319335938	2	558.780879	1115.5472	1.281	0.00071578	-2.3561	-0.0013165	-1.0751	-0.00060074	558.7803344631927	128.63	0.79555	127.17	126.9	127.69	-1.4565					19	15	2	0	0	0	0.026802	1	12272	12272		51.335	5.3835	1	23889	+		5063	29060	4001	4010	6298	6298					-0.005946950991074118
DPSGSRVGWR	10	Unmodified	_DPSGSRVGWR_					0	0	0			REV__nc|ENSG00000187634|Q96NU1-2|SAMD11	REV__nc|ENSG00000187634|Q96NU1-2|SAMD11	MULTI-MATCH	OvCa9_classI_Rep2	2		2	558.780879	1115.5472	1.5087	0.00084302	-1.6083	-0.0008987	-0.099641	-5.5677E-05	558.7800046999475	127.54	0.64142	127.31	127.13	127.78	-0.2359	0.066199	0.00022488	NaN	42.396	14	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31662	+		5064	29060	4001	4010							-0.005946950991074118
DPSMLPARWF	10	Unmodified	_DPSMLPARWF_					0	0	0		nc|ENSG00000133131|Q8TE76-2|MORC4;nc|ENSG00000133131|Q8TE76-3|MORC4;ENSG00000133131|ENST00000355610|MORC4	nc|ENSG00000133131|Q8TE76-2|MORC4	nc|ENSG00000133131|Q8TE76-2|MORC4	MULTI-MSMS	OvCa99_classI_Rep5	1	610.3018798828125	2	610.300059	1218.58556	-0.099255	-6.0575E-05	2.6473	0.0016157	2.5481	0.0015551	610.3016947010794	35.448	1.1991	35.448	35.198	36.397	0					50	25	5	0	0	0	0.47131	1	1788	1788		45.972	0	1	612810			5065	4207	4002	4011	6299	6299					-0.014985255088049598
DPSNEHPI	8	Unmodified	_DPSNEHPI_					0	0	0			REV__ENST00000532683.5_1_14:73569902-73577964:+|nuORF	REV__ENST00000532683.5_1_14:73569902-73577964:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	454.3031005859375	2	454.709057	907.40356	0.66854	0.00030399	-0.98063	-0.0004459	-0.31209	-0.00014191	454.7084623983042	98.122	0.65277	95.743	95.573	96.226	-2.3786					15	12	2	0	0	0	0.028476	1	8718	8718		17.365	0.89182	1	11109	+		5066	18463	4003	4012	6300	6300					-0.05384541930050091
DPSNLLIAEL	10	Unmodified	_DPSNLLIAEL_					0	0	0			REV__RRAGA|p.Q115L|1|0.07|ENSG00000155876|chr9:19050003-19050003|A/T|missense_variant	REV__RRAGA|p.Q115L|1|0.07|ENSG00000155876|chr9:19050003-19050003|A/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	542.7952270507812	2	542.797872	1083.58119	0.86019	0.00046691	0.29504	0.00016015	1.1552	0.00062706	542.7978567793076	153.16	2.0687	153.16	152.45	154.52	0					102	45	3	0	0	0	0.5675	1	18043	18043		45.972	0	1	105310	+		5067	29343	4004	4013	6301	6301					0.04274288549299854
DPSRGTEKLI	10	Unmodified	_DPSRGTEKLI_					0	0	0			REV__ENST00000559798.2_2_15:69452998-69488763:+|nuORF	REV__ENST00000559798.2_2_15:69452998-69488763:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	558.3306884765625	2	558.306395	1114.59824	2.2815	0.0012738	-2.0896	-0.0011666	0.19191	0.00010714	558.3053951285291	89.16	0.98848	87.793	87.379	88.367	-1.3676					24	19	2	0	0	0	0.026994	1	7836	7836		19.104	0	1	20917	+		5068	27603	4005	4014	6302	6302					0.04552209155122
DPSRIGRAR	9	Unmodified	_DPSRIGRAR_					0	0	0			REV__ENST00000360265.8_1_4:7764930-7765155:-|nuORF	REV__ENST00000360265.8_1_4:7764930-7765155:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.755615234375	2	514.291414	1026.56827	1.1546	0.00059379	-2.1705	-0.0011163	-1.0159	-0.00052246	514.290144807114	109.33	0.7513	109.33	109.06	109.81	0					39	16	3	0	0	0	0.027462	1	12354	12354		35.152	0.97948	1	417890	+		5069	24826	4006	4015	6303	6303					0.0560531500043453
DPSSEYRR	8	Unmodified	_DPSSEYRR_					0	0	0		ENST00000558123.5_1_15:41625102-41625156:+|nuORF	ENST00000558123.5_1_15:41625102-41625156:+|nuORF	ENST00000558123.5_1_15:41625102-41625156:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.78619384765625	2	505.238513	1008.46247	-0.40837	-0.00020632	-2.6109	-0.0013191	-3.0193	-0.0015255	505.2351462883101	75.082	1.2584	71.851	71.289	72.547	-3.2308					42	25	3	0	0	0	0.028476	1	5878	5878		25.45	0	1	43420			5070	13693	4007	4016	6304	6304					-0.041420656357104235
DPSVLNWTNVN	11	Unmodified	_DPSVLNWTNVN_					0	0	0			REV__ENSG00000113594|ENST00000453190|LIFR	REV__ENSG00000113594|ENST00000453190|LIFR	MULTI-SECPEP	OvCa99_classI_Rep5	1	629.8346557617188	2	629.806759	1257.59897	2.5245	0.0015899	3.0065	0.0018935	5.531	0.0034834	629.8085929123966	115.49	0.93353	115.49	115.25	116.19	0					34	19	3	0	0	0	0.025806	1	13171	13171		18.262	0.79408	1	123980	+		5071	18161	4008	4017	6305	6305					-0.019529961958369313
DPTAALRKL	9	Unmodified	_DPTAALRKL_					0	0	0		nc|ENSG00000091127|Q96PZ0-2|PUS7;ENSG00000091127|ENST00000469408|PUS7;ENST00000478208.1_1_7:105111092-105112609:-|nuORF	nc|ENSG00000091127|Q96PZ0-2|PUS7	nc|ENSG00000091127|Q96PZ0-2|PUS7	MULTI-MSMS	OvCa9_classI_Rep3	3	492.7951965332031	2	492.795466	983.57638	-0.61364	-0.0003024	0.50992	0.00025129	-0.10372	-5.1115E-05	492.7955881517548	74.379	1.8789	71.969	71.499	73.378	-2.4106					135	37	6	0	0	0	0.44568	1	3723	3723		47.657	1.7054	1	461870			5072	1862	4009	4018	6306	6306					0.08393449197183145
DPTDQMFVF	9	Oxidation (M)	_DPTDQM(Oxidation (M))FVF_		DPTDQM(1)FVF		DPTDQM(61)FVF	0	0	1		ENST00000592597.1_1_19:1093873-1095344:-|nuORF;ENSG00000099817|ENST00000615234|POLR2E;ENST00000586817.5_1_19:1089487-1094188:-|nuORF	ENST00000592597.1_1_19:1093873-1095344:-|nuORF	ENST00000592597.1_1_19:1093873-1095344:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	558.2406616210938	2	558.239332	1114.46411	1.6261	0.00090774	1.5034	0.00083926	3.1295	0.001747	558.2399257549795	129.07	1.6804	128.84	128.53	130.21	-0.22696					70	33	3	0	0	0	0.31747	1	12667	12667		60.972	6.1956	1	122720			5073	1981	4010	4019	6307	6307		71			-0.08854192661965499
DPTHFAYSM	9	Unmodified	_DPTHFAYSM_					0	0	0			REV__ENST00000416281.6_1_11:67048455-67049666:+|nuORF	REV__ENST00000416281.6_1_11:67048455-67049666:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	533.7972412109375	2	534.726392	1067.43823	0.20059	0.00010726	-4.217	-0.0022549	-4.0164	-0.0021477	534.7240008198991	65.593	1.7492	62.897	62.365	64.114	-2.6958					79	34	3	0	0	0	0.027462	1	5035	5035		6.7355	0	1	514140	+		5074	25545	4011	4020	6308	6308					-0.09279042113598734
DPVAREQIL	9	Unmodified	_DPVAREQIL_					0	0	0		tr|A0A7D6VM39|A0A7D6VM39_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13765PE=4SV=1	tr|A0A7D6VM39|A0A7D6VM39_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13765PE=4SV=1	tr|A0A7D6VM39|A0A7D6VM39_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13765PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.791015625	2	520.790381	1039.56621	0.78117	0.00040683	-1.0022	-0.00052194	-0.22103	-0.00011511	520.7897504696963	97.014	1.2556	94.588	94.322	95.577	-2.4256					48	24	3	0	0	0	0.50149	1	8597	8597		42.396	3.1433	1	299860			5075	34646	4012	4021	6309	6309					0.048008414719333814
DPVDDYPKET	10	Unmodified	_DPVDDYPKET_					0	0	0			REV__ENST00000263347.11_1_16:89977658-89977721:+|nuORF	REV__ENST00000263347.11_1_16:89977658-89977721:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.861572265625	2	589.764226	1177.5139	1.198	0.00070654	-0.17494	-0.00010317	1.0231	0.00060337	590.2667374745876	145.88	0.25018	145.88	145.68	145.93	0					6	4	2	0	0	0	0.026674	1	17039	17039		40.058	8.5284	1	16198	+		5076	23998	4013	4022	6310	6310					-0.06775786452340071
DPVKFEEMI	9	Unmodified	_DPVKFEEMI_					0	0	0			REV__FUBP3|p.T79M|1|0.19|ENSG00000107164|chr9:130612467-130612467|C/T|missense_variant	REV__FUBP3|p.T79M|1|0.19|ENSG00000107164|chr9:130612467-130612467|C/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.2991333007812	2	554.273175	1106.5318	1.3545	0.00075077	-3.5032	-0.0019417	-2.1487	-0.001191	554.2718230210447	149.8	1.284	149.8	149.11	150.39	0					39	25	3	0	0	0	0.027461	1	17485	17485		32.812	0	1	45711	+		5077	28146	4014	4023	6311	6311					-0.017207427311632273
DPVKPPGSSL	10	Unmodified	_DPVKPPGSSL_					0	0	0		ENSG00000109458|ENST00000262994|GAB1;nc|ENSG00000109458|Q13480-2|GAB1	ENSG00000109458|ENST00000262994|GAB1	ENSG00000109458|ENST00000262994|GAB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.77294921875	2	498.771657	995.528761	-1.2541	-0.00062552	1.258	0.00062743	0.003838	1.9143E-06	498.77187921749646	71.734	1.3677	68.278	67.825	69.193	-3.4563					81	27	5	0	0	0	0.025401	1	5488	5488		141.52	21.964	1	587260			5078	2713	4015	4024	6312	6312					0.030817502063428037
DPVKPPGSSL	10	Unmodified	_DPVKPPGSSL_					0	0	0		ENSG00000109458|ENST00000262994|GAB1;nc|ENSG00000109458|Q13480-2|GAB1	ENSG00000109458|ENST00000262994|GAB1	ENSG00000109458|ENST00000262994|GAB1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	498.771657	995.528761	0.22103	0.00011024	-0.30091	-0.00015009	-0.079879	-3.9842E-05	498.77125775103974	70.965	1.4992	68.394	67.663	69.163	-2.5707	0.058189	-0.00084973	NaN	141.52	76	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105410			5079	2713	4015	4024							0.030817502063428037
DPVLCWPGGG	10	Unmodified	_DPVLCWPGGG_					0	0	0			REV__ENST00000576107.5_1_16:70497084-70500232:+|nuORF	REV__ENST00000576107.5_1_16:70497084-70500232:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.7520446777344	2	500.731477	999.448402	-0.72913	-0.0003651	2.275	0.0011391	1.5458	0.00077404	500.73261527341805	97.921	1.3691	96.162	95.722	97.091	-1.7595					57	26	3	0	0	0	0.026822	1	6476	6476		23.042	0	1	56699	+		5080	27782	4016	4025	6313	6313					-0.05134434388344289
DPVLELVL	8	Unmodified	_DPVLELVL_					0	0	0			REV__VAC14|p.S204L|1|0.11|ENSG00000103043|chr16:70783538-70783538|G/A|missense_variant	REV__VAC14|p.S204L|1|0.11|ENSG00000103043|chr16:70783538-70783538|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	449.2682800292969	2	449.268219	896.521884	0.9461	0.00042505	0.42185	0.00018952	1.3679	0.00061457	449.26835717612227	113.5	2.9115	112.42	112.15	115.06	-1.0753					133	57	4	0	0	0	0.57878	1	8382	8382		68.485	5.5063	1	1514000	+		5081	32753	4017	4026	6314	6314					0.06948437325752366
DPVLELVL	8	Unmodified	_DPVLELVL_					0	0	0			REV__VAC14|p.S204L|1|0.11|ENSG00000103043|chr16:70783538-70783538|G/A|missense_variant	REV__VAC14|p.S204L|1|0.11|ENSG00000103043|chr16:70783538-70783538|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	449.2685241699219	2	449.268219	896.521884	1.103	0.00049553	0.22693	0.00010195	1.3299	0.00059748	449.26826553228875	113.95	2.2702	112.5	112.2	114.47	-1.4461					120	44	4	0	0	0	0.64377	1	10553	10553		54.765	0	1	1786500	+		5082	32753	4017	4026	6315	6315					0.06948437325752366
DPVLKVHF	8	Unmodified	_DPVLKVHF_					0	0	0			REV__tr|A0A553SME6|A0A553SME6_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_22325PE=4SV=1	REV__tr|A0A553SME6|A0A553SME6_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_22325PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.7518310546875	2	477.774003	953.533452	-1.4285	-0.00068249	4.1349	0.0019756	2.7065	0.0012931	477.77818293774436	51.26	0.79367	48.448	48.005	48.799	-2.8129					31	15	3	0	0	0	0.028476	1	3315	3315		24.203	1.1603	1	23041	+		5083	30321	4018	4027	6316	6316					0.054826791397545094
DPVPRRSPR	9	Unmodified	_DPVPRRSPR_					0	0	0		nc|ENSG00000162775|Q96T37-2|RBM15;nc|ENSG00000162775|Q96T37-3|RBM15;ENSG00000162775|ENST00000369784|RBM15	nc|ENSG00000162775|Q96T37-2|RBM15	nc|ENSG00000162775|Q96T37-2|RBM15	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.83349609375	2	540.307064	1078.59957	-0.97476	-0.00052667	0.56114	0.00030319	-0.41363	-0.00022349	540.3071614704063	27.517	0.35027	27.517	27.341	27.691	0					12	6	2	0	0	0	0.027462	1	832	832		21.96	0	1	121230			5084	6232	4019	4028	6317	6317					0.06341888034512522
DPVTGAVKNT	10	Unmodified	_DPVTGAVKNT_					0	0	0		ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.32733154296875	2	501.266739	1000.51892	1.2282	0.00061565	2.379	0.0011925	3.6072	0.0018082	501.26729197112775	105.79	0.35251	105.79	105.66	106.01	0					12	7	2	0	0	0	0.02676	1	11890	11890		27.047	1.5971	1	121340			5085	2239	4020	4029	6318	6318					0.01868562200957058
DPVTGAVKNT	10	Unmodified	_DPVTGAVKNT_					0	0	0		ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	501.266739	1000.51892	-2.0365	-0.0010208	5.2327	0.002623	3.1962	0.0016021	501.2678024988714	107.35	0.46822	105.47	105.22	105.69	-1.8785	-0.15882	0.0017413	NaN	27.047	14	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16818			5086	2239	4020	4029							0.01868562200957058
DPVVENVYHSF	11	Unmodified	_DPVVENVYHSF_					0	0	0			REV__ENSG00000116138|ENST00000375847|DNAJC16	REV__ENSG00000116138|ENST00000375847|DNAJC16	MULTI-MSMS	OvCa9_classI_Rep3	3	435.87371826171875	3	435.875182	1304.60372	1.6775	0.00073119	-4.4057	-0.0019203	-2.7282	-0.0011891	435.8731814901466	111.37	1.5316	110.26	109.85	111.39	-1.1038					87	30	4	0	0	0	0.48315	2	8072	8072;8076		55.084	8.6271	1	394890	+		5087	18286	4021	4030	6319;6320	6319					-0.036401120530854314
DPWPSLKGVE	10	Unmodified	_DPWPSLKGVE_					0	0	0		ENST00000546766.5_1_12:98988046-98988142:+|nuORF	ENST00000546766.5_1_12:98988046-98988142:+|nuORF	ENST00000546766.5_1_12:98988046-98988142:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.289306640625	2	564.290214	1126.56587	2.7191	0.0015343	-4.1935	-0.0023664	-1.4744	-0.00083201	564.2879513244167	84.288	0.55074	84.288	83.921	84.472	0					21	12	3	0	0	0	0.026674	1	8797	8797		40.058	4.4399	1	424670			5088	13539	4022	4031	6321	6321					0.007654217521121609
DPWRTLLGE	9	Unmodified	_DPWRTLLGE_					0	0	0			REV__chr15:72200655-72207199|106|325.0|0.0|24.95|-|2|PKM,None|3	REV__chr15:72200655-72207199|106|325.0|0.0|24.95|-|2|PKM,None|3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.80419921875	2	543.782556	1085.55056	0.81083	0.00044091	-2.4516	-0.0013331	-1.6408	-0.00089221	543.7821005672864	85.629	1.1809	82.983	82.66	83.841	-2.6463					44	23	3	0	0	0	0.027433	1	7284	7284		45.972	5.1941	1	149060	+		5089	15924	4023	4032	6322	6322					0.01120554954900399
DPWRTLLGE	9	Unmodified	_DPWRTLLGE_					0	0	0			REV__chr15:72200655-72207199|106|325.0|0.0|24.95|-|2|PKM,None|3	REV__chr15:72200655-72207199|106|325.0|0.0|24.95|-|2|PKM,None|3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	543.782556	1085.55056	-1.6631	-0.00090437	0.71006	0.00038612	-0.95305	-0.00051825	543.7830621040238	84.448	1.9981	82.902	82.588	84.586	-1.5462	-0.10099	0.00031536	NaN	45.972	62	39	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98980	+		5090	15924	4023	4032							0.01120554954900399
DPWRTLLGE	9	Unmodified	_DPWRTLLGE_					0	0	0			REV__chr15:72200655-72207199|106|325.0|0.0|24.95|-|2|PKM,None|3	REV__chr15:72200655-72207199|106|325.0|0.0|24.95|-|2|PKM,None|3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	543.782556	1085.55056	-1.0306	-0.00056043	0.41277	0.00022446	-0.61783	-0.00033597	543.7827418544559	85.345	1.4484	83.124	82.888	84.337	-2.2204	0.12127	-7.956E-06	NaN	45.972	57	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227290	+		5091	15924	4023	4032							0.01120554954900399
DPWVKVEY	8	Unmodified	_DPWVKVEY_					0	0	0		ENST00000585403.5_1_17:40719142-40721608:+|nuORF;ENST00000592717.1_1_17:40719142-40719678:+|nuORF;ENST00000590084.5_1_17:40719142-40720585:+|nuORF;ENST00000590050.5_1_17:40719112-40721521:+|nuORF;nc|ENSG00000108788|Q9UH92-2|MLX;ENSG00000108788|ENST00000435881|MLX	ENST00000585403.5_1_17:40719142-40721608:+|nuORF	ENST00000585403.5_1_17:40719142-40721608:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.3599243164062	2	518.260925	1034.5073	-0.081596	-4.2288E-05	2.1886	0.0011343	2.107	0.001092	518.2623338441254	135.99	0.98253	135.76	135.27	136.26	-0.22697					29	19	2	0	0	0	0.028476	1	13469	13469		26.796	0	1	7887.1			5092	14029	4024	4033	6323	6323					-0.00857634822386899
DQAAVTGEMVK	11	Unmodified	_DQAAVTGEMVK_					0	0	0			REV__ENST00000568329.5_1_15:75091021-75093212:+|nuORF	REV__ENST00000568329.5_1_15:75091021-75093212:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	574.7859497070312	2	574.784438	1147.55432	0.20431	0.00011743	2.8734	0.0016516	3.0777	0.001769	574.7859224964665	41.906	0.98635	39.197	38.931	39.917	-2.7097					50	19	4	0	0	0	0.72064	1	2226	2226		22.58	0.89391	1	176440	+		5093	17629	4025	4034	6324	6324					-0.013551433335578622
DQAAWPRRAR	10	Unmodified	_DQAAWPRRAR_					0	0	0			REV__ENST00000455575.1_1_7:86848849-86849557:-|nuORF	REV__ENST00000455575.1_1_7:86848849-86849557:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	614.359130859375	2	613.828695	1225.64284	2.1315	0.0013084	1.6901	0.0010374	3.8216	0.0023458	613.8297563867534	77.382	0.71809	77.382	77.126	77.844	0					32	16	3	0	0	0	0.02709	1	7808	7808		16.717	0	1	619000	+		5094	26016	4026	4035	6325	6325					0.03904077811762363
DQADQECGR	9	Unmodified	_DQADQECGR_					0	0	0		ENSG00000167880|ENST00000301607|EVPL	ENSG00000167880|ENST00000301607|EVPL	ENSG00000167880|ENST00000301607|EVPL	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.25787353515625	2	511.203812	1020.39307	-0.19453	-9.9442E-05	-3.493	-0.0017856	-3.6875	-0.0018851	511.2008955740372	56.281	0.20497	56.281	56.135	56.34	0					5	4	2	0	0	0	0.027462	1	4660	4660		20.947	0	1	79293			5095	6845	4027	4036	6326	6326					-0.11630892646780921
DQADVRDQL	9	Unmodified	_DQADVRDQL_					0	0	0			REV__ENSG00000138080|ENST00000380320|EMILIN1	REV__ENSG00000138080|ENST00000380320|EMILIN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.7964477539062	2	530.256902	1058.49925	-1.0513	-0.00055743	-3.0077	-0.0015949	-4.059	-0.0021523	530.2551328621423	58.397	0.64936	55.005	54.802	55.451	-3.392					29	12	3	0	0	0	0.027462	1	3878	3878		31.53	4.8369	1	81406	+		5096	19508	4028	4037	6327	6327					-0.027658138098104246
DQALWHAPC	9	Unmodified	_DQALWHAPC_					0	0	0			REV__ENSG00000197859|ENST00000651351|ADAMTSL2	REV__ENSG00000197859|ENST00000651351|ADAMTSL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3119506835938	2	520.734551	1039.45455	-0.19876	-0.0001035	2.562	0.0013341	2.3632	0.0012306	520.7358002711904	47.946	0.86278	44.838	44.433	45.296	-3.1077					25	16	2	0	0	0	0.027462	1	2621	2621		21.96	12.777	1	21079	+		5097	22958	4029	4038	6328	6328					-0.06359916156839063
DQAQLKVENV	10	Unmodified	_DQAQLKVENV_					0	0	0			REV__ENSG00000115423|ENST00000389394|DNAH6	REV__ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.302001953125	2	572.303852	1142.59315	0.16553	9.4731E-05	-0.13367	-7.6499E-05	0.031856	1.8231E-05	572.3036720278571	45.224	1.3893	45.224	45.023	46.412	0					62	31	3	0	0	0	0.026843	1	3247	3247		46.457	7.2039	1	1264100	+		5098	18244	4030	4039	6329	6329					0.02755905292474381
DQAQYCIKR	9	Unmodified	_DQAQYCIKR_					0	0	0		nc|ENSG00000077522|P35609-2|ACTN2;ENSG00000077522|ENST00000366578|ACTN2	nc|ENSG00000077522|P35609-2|ACTN2	nc|ENSG00000077522|P35609-2|ACTN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.2998046875	2	562.77949	1123.54443	0.040153	2.2597E-05	-3.5938	-0.0020225	-3.5537	-0.0019999	562.7774428697979	38.783	1.2563	38.783	37.806	39.063	0					41	27	2	0	0	0	0.027462	1	2123	2123		34.173	5.023	1	156740			5099	1575	4031	4040	6330	6330					-0.012402865482727066
DQARFTPL	8	Unmodified	_DQARFTPL_					0	0	0			REV__nc|ENSG00000149212|P58005-4|SESN3	REV__nc|ENSG00000149212|P58005-4|SESN3	MULTI-MSMS	OvCa99_classI_Rep5	1	474.2525329589844	2	474.250892	946.48723	2.149	0.0010192	0.012813	6.0767E-06	2.1618	0.0010252	474.2507745602916	82.842	0.89732	82.842	82.479	83.377	0					49	20	3	0	0	0	0.56195	1	8584	8584		71.296	5.3982	1	3081700	+		5100	20148	4032	4041	6331	6331					0.011846142376612079
DQARRLWAD	9	Unmodified	_DQARRLWAD_					0	0	0			REV__ENSG00000006555|ENST00000371276|TTC22	REV__ENSG00000006555|ENST00000371276|TTC22	MULTI-MSMS	OvCa9_classI_Rep2	2	565.7864990234375	2	565.788704	1129.56285	-0.38704	-0.00021898	-1.2398	-0.00070145	-1.6268	-0.00092043	565.7878905137007	94.337	2.1556	93.237	92.487	94.642	-1.0995					110	42	4	0	0	0	0.29519	1	8449	8449		63.534	7.1001	1	537310	+		5101	16418	4033	4042	6332	6332					0.003255914179590036
DQARRLWAD	9	Unmodified	_DQARRLWAD_					0	0	0			REV__ENSG00000006555|ENST00000371276|TTC22	REV__ENSG00000006555|ENST00000371276|TTC22	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.7896728515625	2	565.788704	1129.56285	0.0093763	5.305E-06	-1.6009	-0.00090576	-1.5915	-0.00090045	565.7877638346957	95.723	2.1069	93.298	92.604	94.711	-2.4256					100	41	3	0	0	0	0.2784	1	8435	8435		65.465	9.0316	1	600000	+		5102	16418	4033	4042	6333	6333					0.003255914179590036
DQAVENNLF	9	Unmodified	_DQAVENNLF_					0	0	0		tr|A0A553SQT1|A0A553SQT1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07240PE=4SV=1	tr|A0A553SQT1|A0A553SQT1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07240PE=4SV=1	tr|A0A553SQT1|A0A553SQT1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07240PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.7991943359375	2	525.248546	1048.48254	1.1025	0.00057911	-4.3234	-0.0022708	-3.2208	-0.0016917	525.2468710632767	128.94	0.98996	128.71	128.33	129.32	-0.22696					29	19	3	0	0	0	0.027459	1	12666	12666		52.937	15.778	1	32705			5103	34192	4034	4043	6334	6334					-0.03976314695773908
DQCGRPTVI	9	Unmodified	_DQCGRPTVI_					0	0	0			REV__ITPA|p.A142T|1|0.17|ENSG00000125877|chr20:3221853-3221853|G/A|missense_variant	REV__ITPA|p.A142T|1|0.17|ENSG00000125877|chr20:3221853-3221853|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2732849121094	2	494.747659	987.480765	-0.36992	-0.00018302	-2.613	-0.0012928	-2.9829	-0.0014758	494.74645970841885	69.455	0.82101	69.455	68.977	69.798	0					31	19	2	0	0	0	0.027426	1	6574	6574		44.117	0	1	3014300	+		5104	28319	4035	4044	6335	6335					-0.013476469853685558
DQCINTDG	8	Unmodified	_DQCINTDG_					0	0	0		FBN2|p.G2185D|1|0.45|ENSG00000138829|chr5:128289210-128289210|C/T|missense_variant	FBN2|p.G2185D|1|0.45|ENSG00000138829|chr5:128289210-128289210|C/T|missense_variant	FBN2|p.G2185D|1|0.45|ENSG00000138829|chr5:128289210-128289210|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	433.17218017578125	2	433.17145	864.328346	1.9505	0.00084491	-0.84733	-0.00036704	1.1032	0.00047787	433.17100760562903	63.152	4.2639	60.118	58.202	62.466	-3.0339					141	92	2	0	0	0	0.74992	1	2219	2219		26.693	3.6504	1	38128			5105	14326	4036	4045	6336	6336					-0.10924467452775843
DQCIPVIEV	9	Unmodified	_DQCIPVIEV_					0	0	0			REV__ENST00000439704.1_1_7:63369621-63370485:-|nuORF	REV__ENST00000439704.1_1_7:63369621-63370485:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.296630859375	2	508.260068	1014.50558	0.42236	0.00021467	3.6039	0.0018317	4.0263	0.0020464	508.2623344133215	45.392	0.91227	45.392	44.932	45.844	0					40	20	4	0	0	0	0.027353	1	3172	3172		71.877	8.5712	1	491630	+		5106	25825	4037	4046	6337	6337					-0.0010901190264576144
DQDENNEFQ	9	Unmodified	_DQDENNEFQ_					0	0	0			REV__ENSG00000070061|ENST00000374647|ELP1	REV__ENSG00000070061|ENST00000374647|ELP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	569.8339233398438	2	569.717807	1137.42106	-0.73649	-0.00041959	-3.2882	-0.0018734	-4.0247	-0.0022929	569.7145693460631	97.988	0.38854	97.095	96.924	97.313	-0.89305					15	7	3	0	0	0	0.027462	1	8872	8872		16.717	0	1	12032	+		5107	16876	4038	4047	6338	6338					-0.14215291185701062
DQDMIYDGGIF	11	Unmodified	_DQDMIYDGGIF_					0	0	0		tr|A0A7D7AC80|A0A7D7AC80_9CLOTBeta-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18145PE=3SV=1	tr|A0A7D7AC80|A0A7D7AC80_9CLOTBeta-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18145PE=3SV=1	tr|A0A7D7AC80|A0A7D7AC80_9CLOTBeta-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18145PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	637.77978515625	2	637.273903	1272.53325	1.0945	0.00069748	3.62	0.0023069	4.7144	0.0030044	637.2761419704627	132.21	1.1364	132.21	131.9	133.04	0					35	23	2	0	0	0	0.43993	1	15346	15346		58.23	12.258	1	968770			5108	36223	4039	4048	6339	6339					-0.09211153433079744
DQDTLSQHG	9	Unmodified	_DQDTLSQHG_					0	0	0		HNRNPK-UBQLN1|1|fusion;HNRNPK-UBQLN1|2|fusion;nc|ENSG00000135018|Q9UMX0-4|UBQLN1;nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1	HNRNPK-UBQLN1|1|fusion	HNRNPK-UBQLN1|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	500.7185363769531	2	500.720153	999.425752	-0.58213	-0.00029148	-2.0798	-0.0010414	-2.6619	-0.0013329	500.7189261253765	39.568	7.3122	39.568	38.972	46.284	0					289	166	3	0	0	0	0.38969	1	2468	2468		52.937	5.0211	1	1705100			5109	14486	4040	4049	6340	6340					-0.07398362252274637
DQDYLHSL	8	Unmodified	_DQDYLHSL_					0	0	0		nc|ENSG00000137312|O75955-2|FLOT1;ENSG00000137312|ENST00000376389|FLOT1;ENST00000487376.5_1_6:30698694-30708587:-|nuORF;FLOT1|p.S205Rfs*2|1|0.2|ENSG00000137312|chr6:30740266-30740267|-/T|frameshift_variant	nc|ENSG00000137312|O75955-2|FLOT1	nc|ENSG00000137312|O75955-2|FLOT1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.2962341308594	2	495.729989	989.445425	-2.599	-0.0012884	1.5082	0.00074766	-1.0908	-0.00054074	495.73045757408903	88.087	0.65439	85.484	85.228	85.882	-2.6027					19	12	2	0	0	0	0.028476	1	7521	7521		35.618	1.4457	1	22046			5110	4577	4041	4050	6341	6341					-0.049719862415145144
DQEKNNSNL	9	Unmodified	_DQEKNNSNL_					0	0	0			REV__nc|ENSG00000101040|Q9ULU4-20|ZMYND8	REV__nc|ENSG00000101040|Q9ULU4-20|ZMYND8	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.3070678710938	2	531.246535	1060.47852	-0.39799	-0.00021143	-2.5815	-0.0013714	-2.9795	-0.0015828	531.245081634287	54.401	0.37959	54.401	54.253	54.632	0					13	8	2	0	0	0	0.027446	1	4398	4398		51.193	0	1	231110	+		5111	26221	4042	4051	6342	6342					-0.049304041894629336
DQENKVKQEF	10	Unmodified	_DQENKVKQEF_					0	0	0			REV__tr|A0A7D6VYL8|A0A7D6VYL8_9CLOTtRNA(N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferaseOS=ClostridiumintestinaleOX=36845GN=mtaBPE=4SV=1	REV__tr|A0A7D6VYL8|A0A7D6VYL8_9CLOTtRNA(N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferaseOS=ClostridiumintestinaleOX=36845GN=mtaBPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	421.75830078125	3	422.210453	1263.60953	1.0706	0.00045201	-0.83441	-0.00035229	0.23617	9.9714E-05	422.20989310658143	30.12	0.24646	27.41	27.261	27.508	-2.7097					6	4	2	0	0	0	0.027088	1	777	777		25.126	7.9592	1	3789.3	+		5112	31821	4043	4052	6343	6343					-0.011730135414154574
DQEVEQQVQ	9	Unmodified	_DQEVEQQVQ_					0	0	0		nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;ENST00000382162.7_1_22:32002284-32014401:+|nuORF;nc|ENSG00000198089|A8K8P3-5|SFI1;ENST00000464333.5_1_22:32012607-32014401:+|nuORF	nc|ENSG00000198089|A8K8P3-10|SFI1;ENST00000464333.5_1_22:32012607-32014401:+|nuORF	nc|ENSG00000198089|A8K8P3-10|SFI1	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.7923583984375	2	551.754192	1101.49383	2.342	0.0012922	-4.0772	-0.0022496	-1.7352	-0.00095739	551.7519549425324	100.59	1.0834	100.59	100.07	101.15	0					40	25	2	0	0	0	0.027247	1	11225	11225		101.6	5.7855	1	1092200			5113	8783;12249	4044	4053	6344	6344					-0.05285537392273909
DQEWKRSCF	9	Unmodified	_DQEWKRSCF_					0	0	0			REV__ENSG00000026652|ENST00000320285|AGPAT4	REV__ENSG00000026652|ENST00000320285|AGPAT4	MULTI-MSMS	OvCa99_classI_Rep5	1	599.7724609375	2	599.769123	1197.52369	1.6634	0.00099765	0.81125	0.00048656	2.4746	0.0014842	599.7694198987367	130.48	0.76382	130.48	130.2	130.96	0					37	15	4	0	0	0	0.53483	1	15145	15145		39.253	2.0937	1	297690	+		5114	16572	4045	4054	6345	6345					-0.0671687692793057
DQFETMEVP	9	Unmodified	_DQFETMEVP_					0	0	0			REV__ENSG00000066739|ENST00000359933|ATG2B	REV__ENSG00000066739|ENST00000359933|ATG2B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.7960815429688	2	548.23679	1094.45903	-0.11372	-6.2347E-05	1.7757	0.0009735	1.662	0.00091115	548.2377678892226	86.951	0.64687	84.324	84.152	84.799	-2.6269					16	12	2	0	0	0	0.027462	1	7384	7384		9.7057	0	1	20639	+		5115	16822	4046	4055	6346	6346					-0.08442496524571652
DQFIFTKL	8	Unmodified	_DQFIFTKL_					0	0	0		tr|A0A553SP11|A0A553SP11_NIACIflagellarbiosynthesisproteinFlhFOS=NialliacirculansOX=1397GN=flhFPE=3SV=1	tr|A0A553SP11|A0A553SP11_NIACIflagellarbiosynthesisproteinFlhFOS=NialliacirculansOX=1397GN=flhFPE=3SV=1	tr|A0A553SP11|A0A553SP11_NIACIflagellarbiosynthesisproteinFlhFOS=NialliacirculansOX=1397GN=flhFPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.2776794433594	2	506.279118	1010.54368	-0.091435	-4.6292E-05	-3.9867	-0.0020184	-4.0782	-0.0020647	506.27678824950533	61.005	1.2162	57.575	57.194	58.41	-3.43					56	24	4	0	0	0	0.57734	1	4156	4156		68.787	5.4806	1	511320			5116	33992	4047	4056	6347	6347					0.03883242074334703
DQFIFTKL	8	Unmodified	_DQFIFTKL_					0	0	0		tr|A0A553SP11|A0A553SP11_NIACIflagellarbiosynthesisproteinFlhFOS=NialliacirculansOX=1397GN=flhFPE=3SV=1	tr|A0A553SP11|A0A553SP11_NIACIflagellarbiosynthesisproteinFlhFOS=NialliacirculansOX=1397GN=flhFPE=3SV=1	tr|A0A553SP11|A0A553SP11_NIACIflagellarbiosynthesisproteinFlhFOS=NialliacirculansOX=1397GN=flhFPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	506.279118	1010.54368	-1.1011	-0.00055747	-2.7417	-0.0013881	-3.8428	-0.0019455	506.2774856487648	60.35	1.3639	57.58	56.933	58.297	-2.7702	0.0024908	0.00080664	NaN	68.787	39	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105440			5117	33992	4047	4056							0.03883242074334703
DQFNLSYFLKS	11	Unmodified	_DQFNLSYFLKS_					0	0	0			REV__nc|ENSG00000124207|P55060-4|CSE1L	REV__nc|ENSG00000124207|P55060-4|CSE1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	454.5687255859375	3	454.562715	1360.66632	0.46222	0.00021011	0.59789	0.00027178	1.0601	0.00048189	454.56309528272794	52.749	0.34945	52.749	52.566	52.915	0					16	7	3	0	0	0	0.02598	1	4166	4166		9.3626	4.4764	1	296330	+		5118	18674	4048	4057	6348	6348					0.0004103401508928073
DQFPLFLII	9	Unmodified	_DQFPLFLII_					0	0	0		nc|ENSG00000185104|Q9UNN5-2|FAF1;ENSG00000185104|ENST00000396153|FAF1	nc|ENSG00000185104|Q9UNN5-2|FAF1	nc|ENSG00000185104|Q9UNN5-2|FAF1	MULTI-MSMS	OvCa99_classI_Rep5	1	553.31884765625	2	553.318243	1104.62193	1.875	0.0010375	-3.7854	-0.0020945	-1.9103	-0.001057	553.3161147147734	112.68	1.2684	112.68	112.39	113.66	0					78	29	4	0	0	0	0.22621	1	12871	12871		71.877	4.3838	1	8263400			5119	8225	4049	4058	6349	6349					0.07380674659566466
DQGAAAGG	8	Unmodified	_DQGAAAGG_					0	0	0		ENSG00000105281|ENST00000542575|SLC1A5	ENSG00000105281|ENST00000542575|SLC1A5	ENSG00000105281|ENST00000542575|SLC1A5	MULTI-SECPEP	OvCa99_classI_Rep5	1	646.3147583007812	1	646.279094	645.271818	2.1551	0.0013928	4.4692	0.0028883	6.6243	0.0042811	646.2818394473126	102.99	0.12316	102.99	102.89	103.01	0					4	2	2	0	0	0	0.028476	1	11500	11500		13.775	1.5685	1	190110			5120	2438	4050	4059	6350	6350					-0.06500727227137304
DQGEAVKDVT	10	Unmodified	_DQGEAVKDVT_					0	0	0		ENSG00000105376|ENST00000221980|ICAM5	ENSG00000105376|ENST00000221980|ICAM5	ENSG00000105376|ENST00000221980|ICAM5	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.7874145507812	2	531.259111	1060.50367	2.0859	0.0011082	-1.1568	-0.00061459	0.92908	0.00049358	531.2595616614012	85.687	0.61388	85.687	85.38	85.994	0					52	14	5	0	0	0	0.026602	1	8963	8963		65.465	1.9315	1	4520100			5121	2450	4051	4060	6351	6351					-0.024163493868854857
DQGGRFPGR	9	Unmodified	_DQGGRFPGR_					0	0	0			REV__WDR33|p.D1237Vfs*18|1|0.34|ENSG00000136709|chr2:127708748-127708749|-/GCGATGGAAACCAAAGGTTTCCTTAAGGCAAGCA|frameshift_variant	REV__WDR33|p.D1237Vfs*18|1|0.34|ENSG00000136709|chr2:127708748-127708749|-/GCGATGGAAACCAAAGGTTTCCTTAAGGCAAGCA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2598876953125	2	495.249215	988.483876	1.9958	0.00098841	-3.1348	-0.0015525	-1.1391	-0.00056411	495.2475910673986	137	0.67331	137	136.73	137.4	0					36	13	4	0	0	0	0.027447	1	15974	15974		39.253	0	1	331120	+		5122	19398	4052	4061	6352	6352					-0.010826358163399163
DQGKNLFSI	9	Unmodified	_DQGKNLFSI_					0	0	0		ENST00000412676.5_1_12:108685470-108685611:-|nuORF	ENST00000412676.5_1_12:108685470-108685611:-|nuORF	ENST00000412676.5_1_12:108685470-108685611:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.3116455078125	2	511.269281	1020.52401	-0.1667	-8.523E-05	-1.7377	-0.00088844	-1.9044	-0.00097367	511.2694029535162	75.028	0.72208	71.797	71.58	72.302	-3.2308					21	14	2	0	0	0	0.027462	1	5945	5945		25.574	4.6271	1	49553			5123	11549	4053	4062	6353	6353					0.014568660635518427
DQGKNLFSI	9	Unmodified	_DQGKNLFSI_					0	0	0		ENST00000412676.5_1_12:108685470-108685611:-|nuORF	ENST00000412676.5_1_12:108685470-108685611:-|nuORF	ENST00000412676.5_1_12:108685470-108685611:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	511.269281	1020.52401	0.57329	0.00029311	-7.0712	-0.0036153	-6.4979	-0.0033222	511.26535086643196	72.144	0.53442	72.144	71.877	72.412	0	0.17339	-0.0027212	NaN	37.812	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	351080			5124	11549	4053	4062							0.014568660635518427
DQGLCCAPLL	10	Carbamidomethyl (C)	_DQGLCC(Carbamidomethyl (C))APLL_	DQGLC(0.022)C(0.978)APLL		DQGLC(-16)C(16)APLL		0	1	0			REV__ENST00000566424.1_1_16:29468907-29469081:+|nuORF	REV__ENST00000566424.1_1_16:29468907-29469081:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.7886352539062	2	545.257002	1088.49945	0.77326	0.00042163	2.9416	0.0016039	3.7149	0.0020256	545.2587898031367	140	0.38724	140	139.78	140.17	0					11	7	2	0	0	0	0.027897	1	16366	16366		98.629	38.511	2	40913	+		5125	25315	4054	4063	6354	6354	313				-0.041258534058215446
DQGLGPCTLAP	11	Unmodified	_DQGLGPCTLAP_					0	0	0			REV__ENST00000418983.1_1_6:29759532-29760213:-|nuORF	REV__ENST00000418983.1_1_6:29759532-29760213:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2991333007812	2	536.260599	1070.50665	-0.78886	-0.00042304	-1.0698	-0.00057369	-1.8587	-0.00099672	536.7624930694184	41.977	0.47637	41.977	41.766	42.242	0					13	10	2	0	0	0	0.025701	1	2650	2650		22.58	9.1256	1	70446	+		5126	25579	4055	4064	6355	6355					-0.025787975337152602
DQGLKRMQAF	10	Unmodified	_DQGLKRMQAF_					0	0	0		chr2:11144142-11151026|270|10.52|0.45|4.53|+|0|TE_info:MER4A,MER4A_dup62,ERV1,LTR,acceptor,+,11151026,11151344|C2orf50,None|3	chr2:11144142-11151026|270|10.52|0.45|4.53|+|0|TE_info:MER4A,MER4A_dup62,ERV1,LTR,acceptor,+,11151026,11151344|C2orf50,None|3	chr2:11144142-11151026|270|10.52|0.45|4.53|+|0|TE_info:MER4A,MER4A_dup62,ERV1,LTR,acceptor,+,11151026,11151344|C2orf50,None|3	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.2836303710938	2	597.308415	1192.60228	3.796	0.0022674	-0.58829	-0.00035139	3.2077	0.001916	597.8087575550628	88.386	0.54794	88.386	88.212	88.76	0					15	12	2	0	0	0	0.026994	1	9412	9412		19.104	0	1	660060			5127	427	4056	4065	6356	6356					0.013679753771612013
DQGPLMKSILG	11	Unmodified	_DQGPLMKSILG_					0	0	0			REV__ENSG00000079101|ENST00000692774|CLUL1	REV__ENSG00000079101|ENST00000692774|CLUL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	578.8576049804688	2	579.812999	1157.61144	-0.72079	-0.00041792	3.4245	0.0019856	2.7038	0.0015677	580.317145693149	74.873	0.28864	71.642	71.532	71.82	-3.2308					6	5	2	0	0	0	0.025487	1	5894	5894		31.634	1.3165	1	24797	+		5128	17032	4057	4066	6357	6357					0.03894323942813571
DQGVKVDNL	9	Unmodified	_DQGVKVDNL_					0	0	0			REV__tr|A0A553SFG0|A0A553SFG0_NIACIHlyDfamilysecretionproteinOS=NialliacirculansOX=1397GN=CEQ21_08830PE=3SV=1	REV__tr|A0A553SFG0|A0A553SFG0_NIACIHlyDfamilysecretionproteinOS=NialliacirculansOX=1397GN=CEQ21_08830PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2837829589844	2	494.258914	986.503274	-0.69196	-0.00034201	0.39546	0.00019546	-0.2965	-0.00014655	494.2590283395718	61.406	0.59021	61.406	61.113	61.704	0					26	13	3	0	0	0	0.027462	1	5370	5370		20.947	0	1	876880	+		5129	29575	4058	4067	6358	6358					0.009482756838906425
DQHCLPPL	8	Unmodified	_DQHCLPPL_					0	0	0			REV__nc|ENSG00000129493|Q86XA9-2|HEATR5A	REV__nc|ENSG00000129493|Q86XA9-2|HEATR5A	MULTI-SECPEP	OvCa99_classI_Rep5	1	461.2611389160156	2	461.726195	921.437837	0.19719	9.1047E-05	-3.9972	-0.0018456	-3.8	-0.0017546	461.72425534705866	62.388	0.41207	62.388	62.209	62.621	0					14	9	2	0	0	0	0.028476	1	5552	5552		38.806	8.3025	1	146690	+		5130	18901	4059	4068	6359	6359					-0.02602417042783145
DQHGCEAI	8	Unmodified	_DQHGCEAI_					0	0	0		RILPL1|p.T199Ifs*9|1|0.05|ENSG00000188026|chr12:123498749-123498750|-/A|frameshift_variant;nc|ENSG00000188026|Q5EBL4-2|RILPL1;ENSG00000188026|ENST00000376874|RILPL1	RILPL1|p.T199Ifs*9|1|0.05|ENSG00000188026|chr12:123498749-123498750|-/A|frameshift_variant	RILPL1|p.T199Ifs*9|1|0.05|ENSG00000188026|chr12:123498749-123498750|-/A|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.8818359375	2	436.681985	871.349416	0.50934	0.00022242	0.68251	0.00029804	1.1918	0.00052046	436.682099277551	64.32	0.48756	60.845	60.686	61.173	-3.475					13	9	2	0	0	0	0.028476	1	4595	4595		21.96	12.254	1	14227			5131	8447	4060	4069	6360	6360					-0.09140457353271358
DQHKLLFMF	9	Unmodified	_DQHKLLFMF_					0	0	0		tr|A0A7D6VM79|A0A7D6VM79_9CLOTSagB/ThcOxfamilydehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12520PE=4SV=1	tr|A0A7D6VM79|A0A7D6VM79_9CLOTSagB/ThcOxfamilydehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12520PE=4SV=1	tr|A0A7D6VM79|A0A7D6VM79_9CLOTSagB/ThcOxfamilydehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12520PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.3368530273438	2	589.804977	1177.5954	0.66012	0.00038934	-1.195	-0.00070479	-0.53483	-0.00031545	589.8045408849763	141.45	0.45088	141.45	141.23	141.69	0					13	8	2	0	0	0	0.027462	1	16517	16517		27.882	0	1	40475			5132	34648	4061	4070	6361	6361					0.013706624965834635
DQHLRPMPL	9	Unmodified	_DQHLRPMPL_					0	0	0			REV__nc|ENSG00000145996|Q5VV42-2|CDKAL1	REV__nc|ENSG00000145996|Q5VV42-2|CDKAL1	MULTI-MSMS	OvCa99_classI_Rep5	1	553.7926635742188	2	553.792401	1105.57025	1.2595	0.00069749	0.55892	0.00030952	1.8184	0.001007	553.7925007248772	144.48	0.63031	144.48	144.21	144.84	0					20	12	2	0	0	0	0.50149	1	16889	16889		42.396	0	1	124410	+		5133	19992	4062	4071	6362	6362					0.021686076940113708
DQHWHSVL	8	Unmodified	_DQHWHSVL_					0	0	0		nc|ENSG00000152910|Q9C0A0-2|CNTNAP4;ENSG00000152910|ENST00000611870|CNTNAP4;ENST00000377653.2_1_9:39174468-39266986:-|nuORF;ENSG00000283378|ENST00000636699|CNTNAP3C;nc|ENSG00000155052|Q8WYK1|CNTNAP5;ENSG00000155052|ENST00000682447|CNTNAP5;nc|ENSG00000154529|Q96NU0-2|CNTNAP3B;ENSG00000154529|ENST00000377561|CNTNAP3B;nc|ENSG00000283378|Q9BZ76-2|CNTNAP3;ENSG00000106714|ENST00000297668|CNTNAP3	nc|ENSG00000152910|Q9C0A0-2|CNTNAP4;nc|ENSG00000154529|Q96NU0-2|CNTNAP3B	nc|ENSG00000154529|Q96NU0-2|CNTNAP3B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.7784729003906	2	511.246141	1020.47773	-1.2014	-0.00061422	1.6626	0.00085001	0.46122	0.0002358	511.24692414849596	73.351	0.7742	69.954	69.543	70.317	-3.3961					24	15	2	0	0	0	0.028476	1	5638	5638		36.447	0	1	38136			5134	5744;5650	4063	4072	6363	6363					-0.03169154047861866
DQIAKLIEQH	10	Unmodified	_DQIAKLIEQH_					0	0	0			REV__ENSG00000167257|ENST00000300650|RNF214	REV__ENSG00000167257|ENST00000300650|RNF214	MULTI-SECPEP	OvCa9_classI_Rep4_	4	598.3167724609375	2	597.827495	1193.64044	1.1164	0.00066744	3.9383	0.0023544	5.0547	0.0030218	597.8306041355279	110.75	1.1572	109.15	108.86	110.02	-1.6011					34	21	2	0	0	0	0.026714	1	10263	10263		28.081	0	1	31436	+		5135	21264	4064	4073	6364	6364					0.05136184563457391
DQIKEGLTK	9	Unmodified	_DQIKEGLTK_					0	0	0			REV__ENSG00000151320|ENST00000280979|AKAP6	REV__ENSG00000151320|ENST00000280979|AKAP6	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.3108520507812	2	516.290214	1030.56587	0.39193	0.00020235	-3.7901	-0.0019568	-3.3982	-0.0017544	516.7903052385758	99.289	0.25233	97.604	97.423	97.676	-1.685					5	4	2	0	0	0	0.027462	1	6668	6668		28.081	0	1	5250.2	+		5136	15586	4065	4074	6365	6365					0.05181421752058668
DQILEGSFLL	10	Unmodified	_DQILEGSFLL_					0	0	0		ENSG00000102034|ENST00000308167|ELF4;ELF4|p.W251Dfs*11|1|0.24|ENSG00000102034|chrX:130071098-130071099|-/TC|frameshift_variant	ENSG00000102034|ENST00000308167|ELF4;ELF4|p.W251Dfs*11|1|0.24|ENSG00000102034|chrX:130071098-130071099|-/TC|frameshift_variant	ENSG00000102034|ENST00000308167|ELF4	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.8235473632812	2	567.805697	1133.59684	0.025071	1.4236E-05	0.90154	0.0005119	0.92662	0.00052614	567.8052610531744	69.358	0.48622	69.358	69.145	69.632	0					32	11	4	0	0	0	0.026674	1	6578	6578		47.96	16.43	1	995010			5137	2219;793	4066	4075	6366	6366					0.035385750663408544
DQILSTGPPL	10	Unmodified	_DQILSTGPPL_					0	0	0			REV__ENST00000463909.1_1_22:21349904-21350666:+|nuORF	REV__ENST00000463909.1_1_22:21349904-21350666:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	520.7844848632812	2	520.784764	1039.55498	-1.9205	-0.0010002	0.56253	0.00029296	-1.358	-0.00070721	520.7849648493748	140.2	1.1316	139.16	138.79	139.92	-1.0339					49	22	3	0	0	0	0.67931	1	11541	11541		32.812	0	1	84780	+		5138	26138	4067	4076	6367	6367					0.036780193777985914
DQILYRLAR	9	Unmodified	_DQILYRLAR_					0	0	0			REV__ENSG00000164327|ENST00000357387|RICTOR	REV__ENSG00000164327|ENST00000357387|RICTOR	MULTI-SECPEP	OvCa9_classI_Rep2	2	574.3085327148438	2	574.332747	1146.65094	-0.039146	-2.2483E-05	2.7398	0.0015735	2.7006	0.001551	574.333891570978	126.72	0.29698	126.49	126.29	126.59	-0.23589					9	5	2	0	0	0	0.027462	1	12364	12364		27.882	13.017	1	9556.7	+		5139	20977	4068	4077	6368	6368					0.0834821200855913
DQIPIKFLIRQ	11	Unmodified	_DQIPIKFLIRQ_					0	0	0		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2;ENST00000583822.5_1_17:59949574-59962361:-|nuORF	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-MSMS	OvCa9_classI_Rep2	2	457.60845947265625	3	457.61	1369.80817	-3.7462	-0.0017143	-0.70205	-0.00032127	-4.4483	-0.0020356	457.60971240856696	157.06	2.9403	156.83	155.39	158.33	-0.22696					220	89	3	0	0	0	0.72524	1	16006	16006		12.433	0.50046	1	46638			5140	2658	4069	4078	6369	6369					0.13805871828071759
DQITRRELYWV	11	Unmodified	_DQITRRELYWV_					0	0	0			REV__ENSG00000006695|ENST00000261643|COX10	REV__ENSG00000006695|ENST00000261643|COX10	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.7674255371094	3	493.596531	1477.76776	-0.081545	-4.025E-05	-0.63701	-0.00031442	-0.71855	-0.00035468	493.5960565146913	39.687	0.49727	36.978	36.805	37.302	-2.7097					16	9	2	0	0	0	0.026174	1	1968	1968		22.562	0	1	43494	+		5141	16423	4070	4079	6370	6370					0.04798905437655776
DQKARQLAAEL	11	Unmodified	_DQKARQLAAEL_					0	0	0			REV__CON__REFSEQ:XP_092267	REV__CON__REFSEQ:XP_092267	MULTI-MSMS	OvCa9_classI_Rep2	2	414.8983154296875	3	414.89821	1241.6728	0.68431	0.00028392	-0.52861	-0.00021932	0.1557	6.46E-05	414.8979200056025	40.385	1.1346	37.675	37.402	38.536	-2.7097					61	22	4	0	0	0	0.69099	1	2045	2045		35.496	3.4615	1	373030	+	+	5142	16180	4071	4080	6371	6371					0.06162971966477926
DQKGVTII	8	Unmodified	_DQKGVTII_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-SECPEP	OvCa99_classI_Rep5	1	438.25335693359375	2	437.255643	872.496732	0.61286	0.00026798	-0.26658	-0.00011656	0.34628	0.00015141	437.25531381380995	42.905	0.26126	42.905	42.709	42.97	0					9	5	2	0	0	0	0.028476	1	2782	2782		30.504	13.139	1	146430			5143	4070	4072	4081	6372	6372					0.05538382523195651
DQKGVTII	8	Unmodified	_DQKGVTII_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MATCH	OvCa9_classI_Rep2	2		2	437.255643	872.496732	0.6056	0.0002648	0.43179	0.0001888	1.0374	0.0004536	437.255994342991	45.293	1.1497	42.583	42.298	43.448	-2.7097	-0.1068	-0.0010564	NaN	30.504	50	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75661			5144	4070	4072	4081							0.05538382523195651
DQKGVTII	8	Unmodified	_DQKGVTII_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	437.255643	872.496732	-0.77389	-0.00033839	2.7296	0.0011935	1.9557	0.00085513	437.25677095000435	45.62	0.78292	42.582	42.23	43.013	-3.0385	-0.10805	0.00095304	NaN	30.504	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57155			5145	4070	4072	4081							0.05538382523195651
DQKLLYHY	8	Unmodified	_DQKLLYHY_					0	0	0			REV__tr|A0A553SIJ4|A0A553SIJ4_NIACIAcyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_15005PE=3SV=1	REV__tr|A0A553SIJ4|A0A553SIJ4_NIACIAcyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_15005PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.268798828125	2	540.279649	1078.54475	0.07595	4.1034E-05	-0.66951	-0.00036172	-0.59356	-0.00032069	540.2790094607283	57.166	0.86361	57.166	56.702	57.566	0					34	19	3	0	0	0	0.028476	1	4777	4777		19.36	0	1	806120	+		5146	29897	4073	4082	6373	6373					0.00861456443226416
DQKNLFLI	8	Unmodified	_DQKNLFLI_					0	0	0			REV__nc|ENSG00000087460|Q5JWF2|GNAS;REV__DLGAP1-GNAS|19|fusion	REV__nc|ENSG00000087460|Q5JWF2|GNAS	MULTI-SECPEP	OvCa9_classI_Rep2	2	494.8040466308594	2	495.784567	989.554582	0.88917	0.00044083	1.5803	0.00078348	2.4695	0.0012243	495.7852471647639	65.157	0.50729	62.433	62.285	62.792	-2.7246					15	9	2	0	0	0	0.028476	1	4998	4998		46.766	0	1	11299	+		5147	28747;16305	4074	4083	6374	6374					0.059386444485994616
DQKSKHLKE	9	Unmodified	_DQKSKHLKE_					0	0	0		ENSG00000144015|ENST00000272395|TRIM43;ENSG00000144010|ENST00000639673|TRIM43B	ENSG00000144015|ENST00000272395|TRIM43	ENSG00000144015|ENST00000272395|TRIM43	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.84375	2	556.806562	1111.59857	-0.98285	-0.00054726	1.3711	0.00076344	0.38825	0.00021618	557.3086996275777	63.874	0.23792	63.874	63.773	64.011	0					8	5	2	0	0	0	0.027462	1	5776	5776		34.173	0	1	172270			5148	5116	4075	4084	6375	6375					0.04723628874944552
DQKYDNLLPV	10	Unmodified	_DQKYDNLLPV_					0	0	0			REV__ENSG00000126773|ENST00000406854|PCNX4	REV__ENSG00000126773|ENST00000406854|PCNX4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	602.87353515625	2	602.814053	1203.61355	0.41394	0.00024953	3.45	0.0020797	3.8639	0.0023292	602.8160702823479	105.12	0.84907	103.11	102.85	103.7	-2.0161					26	16	2	0	0	0	0.026635	1	9508	9508		31.53	0	1	61268	+		5149	18793	4076	4085	6376	6376					0.01989075952269559
DQLALNHRA	9	Unmodified	_DQLALNHRA_					0	0	0		ENST00000379979.8_1_5:95150348-95150648:-|nuORF	ENST00000379979.8_1_5:95150348-95150648:-|nuORF	ENST00000379979.8_1_5:95150348-95150648:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.79443359375	2	519.277972	1036.54139	-2.3066	-0.0011978	3.4539	0.0017935	1.1473	0.00059577	519.2793881142244	103.77	0.63705	103.77	103.51	104.15	0					49	14	5	0	0	0	0.027462	1	11574	11574		44.117	0	1	1184800			5150	11138	4077	4086	6377	6377					0.024582063892466977
DQLDSGGFHP	10	Unmodified	_DQLDSGGFHP_					0	0	0			REV__chr12:69359236-69362788|199|14.18|0.22|6.03|+|2|TE_info:HAL1,HAL1_dup16795,L1,LINE,donor,-,69358807,69359236|None,YEATS4|3	REV__chr12:69359236-69362788|199|14.18|0.22|6.03|+|2|TE_info:HAL1,HAL1_dup16795,L1,LINE,donor,-,69358807,69359236|None,YEATS4|3	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.82861328125	2	536.738345	1071.46214	-0.5379	-0.00028871	3.6451	0.0019565	3.1072	0.0016678	536.7402551109789	66.418	0.16445	66.418	66.288	66.452	0					5	3	2	0	0	0	0.026553	1	6155	6155		56.721	27.17	1	74130	+		5151	15892	4078	4087	6378	6378					-0.07073485355545017
DQLEMRSYL	9	Unmodified	_DQLEMRSYL_					0	0	0		ENSG00000176542|ENST00000316407|USF3	ENSG00000176542|ENST00000316407|USF3	ENSG00000176542|ENST00000316407|USF3	MULTI-MSMS	OvCa99_classI_Rep5	1	577.7799072265625	2	577.779156	1153.54376	1.3982	0.00080785	-1.8039	-0.0010422	-0.40565	-0.00023437	577.7780326459808	119.96	0.53053	119.96	119.7	120.23	0					36	11	4	0	0	0	0.26076	1	13800	13800		67.494	0	1	1609800			5152	7613	4079	4088	6379	6379					-0.026871259879726495
DQLETLQT	8	Unmodified	_DQLETLQT_					0	0	0		nc|ENSG00000113448|Q08499-4|PDE4D;nc|ENSG00000113448|Q08499-3|PDE4D;nc|ENSG00000285188|Q08493-2|PDE4C;nc|ENSG00000113448|Q08499-2|PDE4D;nc|ENSG00000113448|Q08499-10|PDE4D;ENSG00000105650|ENST00000262805|PDE4C;nc|ENSG00000113448|Q08499-9|PDE4D;nc|ENSG00000285188|Q08493|PDE4C;nc|ENSG00000113448|Q08499-6|PDE4D;nc|ENSG00000113448|Q08499-11|PDE4D;ENSG00000113448|ENST00000340635|PDE4D	nc|ENSG00000113448|Q08499-4|PDE4D	nc|ENSG00000113448|Q08499-4|PDE4D	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.270263671875	2	474.237647	946.460741	0.40339	0.0001913	-0.14016	-6.6467E-05	0.26323	0.00012483	474.23749065322403	45.267	0.55554	45.267	45.068	45.624	0					16	12	2	0	0	0	0.028476	1	3116	3116		26.693	0	1	285420			5153	2482	4080	4089	6380	6380					-0.014631194443268214
DQLETLQT	8	Unmodified	_DQLETLQT_					0	0	0		nc|ENSG00000113448|Q08499-4|PDE4D;nc|ENSG00000113448|Q08499-3|PDE4D;nc|ENSG00000285188|Q08493-2|PDE4C;nc|ENSG00000113448|Q08499-2|PDE4D;nc|ENSG00000113448|Q08499-10|PDE4D;ENSG00000105650|ENST00000262805|PDE4C;nc|ENSG00000113448|Q08499-9|PDE4D;nc|ENSG00000285188|Q08493|PDE4C;nc|ENSG00000113448|Q08499-6|PDE4D;nc|ENSG00000113448|Q08499-11|PDE4D;ENSG00000113448|ENST00000340635|PDE4D	nc|ENSG00000113448|Q08499-4|PDE4D	nc|ENSG00000113448|Q08499-4|PDE4D	MULTI-MATCH	OvCa9_classI_Rep2	2		2	474.237647	946.460741	-0.83471	-0.00039585	0.88464	0.00041953	0.049933	2.368E-05	474.2379344299399	48.144	0.89716	45.434	45.182	46.079	-2.7097	0.16656	0.00078647	NaN	26.693	28	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32944			5154	2482	4080	4089							-0.014631194443268214
DQLHVSVI	8	Unmodified	_DQLHVSVI_					0	0	0			REV__ENSG00000159267|ENST00000674895|HLCS	REV__ENSG00000159267|ENST00000674895|HLCS	MULTI-MSMS	OvCa99_classI_Rep5	1	455.7545166015625	2	455.753267	909.491981	2.8368	0.0012929	-0.40786	-0.00018588	2.4289	0.001107	455.7529164264022	89.269	0.80508	89.269	89.043	89.848	0					44	19	4	0	0	0	0.56195	1	9524	9524		71.296	5.4925	1	2063100	+		5155	20606	4081	4090	6381	6381					0.03361498380422745
DQLHVSVI	8	Unmodified	_DQLHVSVI_					0	0	0			REV__ENSG00000159267|ENST00000674895|HLCS	REV__ENSG00000159267|ENST00000674895|HLCS	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	455.753267	909.491981	2.8368	0.0012929	-0.40786	-0.00018588	2.4289	0.001107	455.7529164264022	89.269	0.80508	89.269	89.043	89.848	0	0	0	NaN	71.296	44	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2063100	+		5156	20606	4081	4090							0.03361498380422745
DQLIDRIIL	9	Unmodified	_DQLIDRIIL_					0	0	0			REV__ENSG00000155561|ENST00000285968|NUP205	REV__ENSG00000155561|ENST00000285968|NUP205	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.8310546875	2	549.829506	1097.64446	-0.33948	-0.00018666	-0.54041	-0.00029713	-0.8799	-0.00048379	549.8292171061989	83.08	2.9395	80.397	79.733	82.673	-2.6829					155	60	5	0	0	0	0.10502	1	6977	6977		95.815	16.103	1	5921500	+		5157	20431	4082	4091	6382	6382					0.0995427405719056
DQLKHTKIY	9	Unmodified	_DQLKHTKIY_					0	0	0			REV__ENSG00000066117|ENST00000394963|SMARCD1	REV__ENSG00000066117|ENST00000394963|SMARCD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.8032836914062	2	573.319306	1144.62406	-0.58003	-0.00033254	-3.4691	-0.0019889	-4.0491	-0.0023214	573.3173620425387	24.262	0.24867	24.262	24.137	24.386	0					9	4	3	0	0	0	0.027462	1	432	432		19.997	0	1	24429	+		5158	16809	4083	4092	6383	6383					0.05753103397364612
DQLKLYEE	8	Unmodified	_DQLKLYEE_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.D1429Afs*26|1|0.04|ENSG00000175054|chr3:142519765-142519765|T/-|frameshift_variant	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.7352294921875	2	519.261122	1036.50769	1.4452	0.00075045	0.88436	0.00045922	2.3296	0.0012097	519.2614477818361	91.356	1.1986	91.356	90.976	92.174	0					64	28	4	0	0	0	0.028476	1	9799	9799		55.504	2.1528	1	2699100			5159	7509	4084	4093	6384	6384					-0.00910259893203147
DQLKLYEE	8	Unmodified	_DQLKLYEE_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.D1429Afs*26|1|0.04|ENSG00000175054|chr3:142519765-142519765|T/-|frameshift_variant	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-MATCH	OvCa9_classI_Rep3	3		2	519.261122	1036.50769	-1.1103	-0.00057656	-2.5556	-0.001327	-3.666	-0.0019036	519.2585190478466	92.939	0.34201	90.978	90.836	91.178	-1.9617	-0.18899	-0.003378	NaN	55.504	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22087			5160	7509	4084	4093							-0.00910259893203147
DQLKRKLD	8	Unmodified	_DQLKRKLD_					0	0	0		ENSG00000122432|ENST00000699524|SPATA1;nc|ENSG00000122432|Q5VX52|SPATA1	ENSG00000122432|ENST00000699524|SPATA1	ENSG00000122432|ENST00000699524|SPATA1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3153076171875	2	508.298373	1014.58219	-0.56076	-0.00028503	1.8114	0.00092075	1.2507	0.00063572	508.298113968552	106.03	0.50963	104.01	103.65	104.16	-2.0161					13	9	2	0	0	0	0.028476	1	9598	9598		37.812	0	1	10818			5161	3531	4085	4094	6385	6385					0.07548547708836395
DQLLLQEQS	9	Unmodified	_DQLLLQEQS_					0	0	0			REV__ENSG00000115760|ENST00000421745|BIRC6	REV__ENSG00000115760|ENST00000421745|BIRC6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.2940673828125	2	537.277303	1072.54005	-1.9569	-0.0010514	0.96145	0.00051657	-0.99541	-0.00053481	537.277554149727	72.016	0.82746	68.559	68.317	69.144	-3.4563					26	16	2	0	0	0	0.027452	1	5559	5559		49.536	8.9634	1	87700	+		5162	18266	4086	4095	6386	6386					0.006685275098107013
DQLLQEPPM	9	Unmodified	_DQLLQEPPM_					0	0	0			REV__ENSG00000134250|ENST00000256646|NOTCH2	REV__ENSG00000134250|ENST00000256646|NOTCH2	MULTI-MSMS	OvCa9_classI_Rep2	2	535.7612915039062	2	535.762975	1069.5114	-0.90754	-0.00048622	0.58725	0.00031463	-0.32029	-0.0001716	535.7631866225162	78.426	1.9965	76.686	75.881	77.878	-1.7398					108	38	4	0	0	0	0.3076	1	6535	6535		62.107	5.3864	1	494290	+		5163	19188	4087	4096	6387	6387					-0.020579133909905067
DQLLQLPDI	9	Unmodified	_DQLLQLPDI_					0	0	0			REV__nc|ENSG00000140600|Q99963-2|SH3GL3	REV__nc|ENSG00000140600|Q99963-2|SH3GL3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.8204956054688	2	527.792589	1053.57063	-0.81155	-0.00042833	-0.22742	-0.00012003	-1.039	-0.00054836	527.7923049760752	63.884	0.82182	60.409	60.109	60.931	-3.475					34	16	3	0	0	0	0.027441	1	4547	4547		32.812	0	1	115590	+		5164	19691	4088	4097	6388	6388					0.04598305894865007
DQLLQPALIL	10	Unmodified	_DQLLQPALIL_					0	0	0			REV__ENST00000598490.1_1_19:42806306-42813777:+|nuORF	REV__ENST00000598490.1_1_19:42806306-42813777:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.344970703125	2	562.339707	1122.66486	2.5554	0.001437	3.9669	0.0022307	6.5223	0.0036677	562.341833951132	139.43	3.4203	137.93	136.47	139.89	-1.4952					166	69	3	0	0	0	0.73378	1	13578	13578		26.693	2.1737	1	141360	+		5165	28010	4089	4098	6389	6389					0.10843444716988415
DQLLRTLDI	9	Unmodified	_DQLLRTLDI_					0	0	0		nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33	nc|ENSG00000149451|Q9BZ11-2|ADAM33	nc|ENSG00000149451|Q9BZ11-2|ADAM33	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.8082275390625	2	543.811313	1085.60807	-0.0069393	-3.7737E-06	-0.4449	-0.00024194	-0.45184	-0.00024572	543.8109541923094	114.68	1.5733	113.28	112.99	114.56	-1.3977					68	30	3	0	0	0	0.10421	1	10655	10655		96.034	2.8904	1	191730			5166	5459	4090	4099	6390	6390					0.06869397160471635
DQLNPHIIAA	10	Unmodified	_DQLNPHIIAA_					0	0	0			REV__ENSG00000108381|ENST00000263080|ASPA	REV__ENSG00000108381|ENST00000263080|ASPA	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.3096313476562	2	546.29583	1090.57711	-0.19085	-0.00010426	-2.2404	-0.0012239	-2.4312	-0.0013282	546.2945935229608	51.323	0.25589	51.323	51.248	51.504	0					8	5	2	0	0	0	0.027084	1	3964	3964		24.203	1.1603	1	205720	+		5167	17882	4091	4100	6391	6391					0.03544243846226891
DQLPKKDVHNL	11	Unmodified	_DQLPKKDVHNL_					0	0	0		tr|A0A553SG96|A0A553SG96_NIACIDeaminaseOS=NialliacirculansOX=1397GN=CEQ21_10425PE=4SV=1	tr|A0A553SG96|A0A553SG96_NIACIDeaminaseOS=NialliacirculansOX=1397GN=CEQ21_10425PE=4SV=1	tr|A0A553SG96|A0A553SG96_NIACIDeaminaseOS=NialliacirculansOX=1397GN=CEQ21_10425PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.24163818359375	3	436.241976	1305.7041	0.22667	9.8884E-05	-2.5193	-0.001099	-2.2926	-0.0010001	436.24089196043764	21.376	1.5844	20.038	19.646	21.231	-1.3386					77	31	3	0	0	0	0.69308	1	200	200		32.034	2.8641	1	808510			5168	33130	4092	4101	6392	6392					0.06347545000585342
DQLPWVLLM	9	Unmodified	_DQLPWVLLM_					0	0	0		ENST00000380787.5_1_X:10535592-10851693:-|nuORF;ENST00000380779.5_1_X:10535592-10544928:-|nuORF	ENST00000380787.5_1_X:10535592-10851693:-|nuORF	ENST00000380787.5_1_X:10535592-10851693:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.84375	2	557.801903	1113.58925	-0.9127	-0.0005091	3.8802	0.0021644	2.9675	0.0016553	557.8040443011522	63.919	0.60192	63.919	63.773	64.375	0					24	14	4	0	0	0	0.027462	1	5776	5776		34.173	0	1	644770			5169	11152	4093	4102	6393	6393					0.037001442650534955
DQLRLRTDH	9	Unmodified	_DQLRLRTDH_					0	0	0			REV__ENST00000325076.9_1_20:34190424-34191756:-|nuORF	REV__ENST00000325076.9_1_20:34190424-34191756:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	577.3063354492188	2	577.307261	1152.59997	-0.73929	-0.0004268	0.064231	3.7081E-05	-0.67506	-0.00038972	577.3072792887777	39.495	1.5209	36.569	36.296	37.817	-2.9264					91	29	4	0	0	0	0.22621	1	1640	1640		71.877	1.4789	1	892530	+		5170	24479	4094	4103	6394	6394					0.029772629636909187
DQLTKNEI	8	Unmodified	_DQLTKNEI_					0	0	0		tr|A0A553SIN5|A0A553SIN5_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_15210PE=3SV=1	tr|A0A553SIN5|A0A553SIN5_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_15210PE=3SV=1	tr|A0A553SIN5|A0A553SIN5_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_15210PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	480.75323486328125	2	480.753464	959.492375	-1.2471	-0.00059957	1.342	0.00064516	0.094846	4.5598E-05	480.7539212533709	43.83	0.56123	43.83	43.608	44.169	0					26	12	3	0	0	0	0.19367	1	2924	2924		125.81	7.0709	1	456800			5171	33402	4095	4104	6395	6395					0.011008733096218748
DQLVEEGSP	9	Unmodified	_DQLVEEGSP_					0	0	0			REV__ENSG00000100297|ENST00000216122|MCM5;REV__MCM5-LYN|1|fusion	REV__ENSG00000100297|ENST00000216122|MCM5	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.7802429199219	2	487.227279	972.440005	-1.116	-0.00054373	1.7211	0.00083857	0.60515	0.00029484	487.2279901766462	70.147	0.81631	70.147	69.712	70.528	0					32	19	2	0	0	0	0.027462	1	6720	6720		42.396	7.1954	1	267970	+		5172	17393;28645	4096	4105	6396	6396					-0.047317098239886946
DQLVKSDGL	9	Unmodified	_DQLVKSDGL_					0	0	0			REV__ENSG00000143971|ENST00000272342|ETAA1	REV__ENSG00000143971|ENST00000272342|ETAA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.7621765136719	2	487.761289	973.508025	0.23635	0.00011528	-0.92543	-0.00045139	-0.68907	-0.0003361	487.7609543280194	59.323	1.0374	55.931	55.553	56.591	-3.392					84	20	6	0	0	0	0.13504	1	3956	3956		87.696	5.4559	1	1233600	+		5173	19881	4097	4106	6397	6397					0.02021159826665553
DQLWSAPL	8	Unmodified	_DQLWSAPL_					0	0	0			REV__ENST00000348520.10_2_14:104168248-104168920:+|nuORF	REV__ENST00000348520.10_2_14:104168248-104168920:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.782470703125	2	465.239993	928.465432	-0.70153	-0.00032638	-3.1389	-0.0014604	-3.8405	-0.0017867	465.2378504694321	52.713	1.3601	49.505	49.044	50.404	-3.208					54	26	4	0	0	0	0.028476	1	3183	3183		44.117	6.9577	1	183920	+		5174	24710	4098	4107	6398	6398					-0.001661905109244799
DQLYISELD	9	Unmodified	_DQLYISELD_					0	0	0			REV__ENST00000447882.1_1_1:16361675-16363149:-|nuORF	REV__ENST00000447882.1_1_1:16361675-16363149:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.279052734375	2	548.263862	1094.51317	0.63089	0.00034589	2.9305	0.0016067	3.5614	0.0019526	548.2647725375062	101.96	0.56091	101.96	101.65	102.21	0					17	12	3	0	0	0	0.027459	1	11335	11335		44.377	15.207	1	147330	+		5175	22510	4099	4108	6399	6399					-0.030305811013704442
DQLYPQCAPT	10	Unmodified	_DQLYPQCAPT_					0	0	0			REV__ENST00000579222.1_1_17:62078371-62078671:+|nuORF	REV__ENST00000579222.1_1_17:62078371-62078671:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.2765502929688	2	568.258056	1134.50156	2.8818	0.0016376	0.087794	4.989E-05	2.9696	0.0016875	568.2578870760894	107.78	0.50726	107.78	107.52	108.03	0					22	11	3	0	0	0	0.026968	1	12199	12199		22.58	0	1	795100	+		5176	23357	4100	4109	6400	6400					-0.06031101396365557
DQMCQFLL	8	Unmodified	_DQMCQFLL_					0	0	0			REV__ENSG00000105576|ENST00000425528|TNPO2	REV__ENSG00000105576|ENST00000425528|TNPO2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.28668212890625	2	499.227713	996.440874	-0.98994	-0.00049421	1.0041	0.00050126	0.014133	7.0557E-06	499.2282555909983	80.391	0.29417	77.68	77.516	77.81	-2.7106					7	5	2	0	0	0	0.028476	1	6549	6549		63.306	15.391	1	12892	+		5177	17738	4101	4110	6401	6401					-0.057489099802864985
DQMFAHDPI	9	Unmodified	_DQMFAHDPI_					0	0	0			REV__ENSG00000196449|ENST00000373044|YRDC	REV__ENSG00000196449|ENST00000373044|YRDC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.2929077148438	2	537.239667	1072.46478	-1.1836	-0.0006359	2.7032	0.0014523	1.5196	0.00081638	537.2410392054775	77.257	0.48547	74.44	74.244	74.729	-2.8165					12	9	2	0	0	0	0.027462	1	6176	6176		35.618	6.4482	1	24618	+		5178	22827	4102	4111	6402	6402					-0.06855353222272242
DQMIMTHAM	9	2 Oxidation (M)	_DQM(Oxidation (M))IM(Oxidation (M))THAM_		DQM(1)IM(0.983)THAM(0.018)		DQM(33)IM(18)THAM(-18)	0	0	2			REV__nc|ENSG00000147180|Q9Y462|ZNF711	REV__nc|ENSG00000147180|Q9Y462|ZNF711	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.3228759765625	2	555.224845	1108.43514	-0.17008	-9.4432E-05	3.1934	0.001773	3.0233	0.0016786	555.2265447805439	51.423	0.39911	48.249	48.022	48.421	-3.1734					11	7	2	0	0	0	0.027295	1	3023	3023		74.255	12.148	3	16778	+		5179	20050	4103	4112	6403	6403		465;466			-0.11474376554269838
DQMVLMKSE	9	Unmodified	_DQMVLMKSE_					0	0	0			REV__NOS1AP|p.S460Vfs*43|1|0.07|ENSG00000198929|chr1:162367321-162367322|-/A|frameshift_variant	REV__NOS1AP|p.S460Vfs*43|1|0.07|ENSG00000198929|chr1:162367321-162367322|-/A|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.830078125	2	540.756835	1079.49912	1.7563	0.00094975	3.1357	0.0016957	4.892	0.0026454	540.7588911770455	87.375	0.48937	87.375	87.096	87.586	0					16	11	2	0	0	0	0.027462	1	9274	9274		25.574	3.6142	1	318070	+		5180	23095	4104	4113	6404	6404					-0.03745273125650783
DQNDEFQL	8	Unmodified	_DQNDEFQL_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-SECPEP	OvCa9_classI_Rep4_	4	504.7966003417969	2	504.717079	1007.4196	-0.51068	-0.00025775	0.88216	0.00044524	0.37148	0.00018749	504.71729767587215	66.774	0.54105	63.283	63.049	63.59	-3.4902					17	10	2	0	0	0	0.028476	1	4900	4900		64.207	0	1	30232	+		5181	17764	4105	4114	6405	6405					-0.08380880483798592
DQNIDVDAL	9	Unmodified	_DQNIDVDAL_					0	0	0		ENSG00000244234|ENST00000463439|GMCL2	ENSG00000244234|ENST00000463439|GMCL2	ENSG00000244234|ENST00000463439|GMCL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.2594909667969	2	501.740554	1001.46655	1.1482	0.00057609	2.4896	0.0012491	3.6378	0.0018252	501.7417990881303	143.36	0.49503	143.36	143.07	143.56	0					13	9	2	0	0	0	0.027462	1	16771	16771		30.318	18.807	1	18145			5182	9393	4106	4115	6406	6406					-0.03412020932660198
DQNLFQGLL	9	Unmodified	_DQNLFQGLL_					0	0	0			REV__nc|ENSG00000123243|Q86UX2-3|ITIH5	REV__nc|ENSG00000123243|Q86UX2-3|ITIH5	MULTI-MSMS	OvCa9_classI_Rep2	2	524.277099609375	2	524.277106	1046.53966	0.77919	0.00040851	-1.2393	-0.00064976	-0.46015	-0.00024125	524.2763197731864	41.272	1.9717	38.562	38.093	40.065	-2.7097					88	39	4	0	0	0	0.16524	2	2146	2146;2177		82.305	12.066	1	944830	+		5183	18633	4107	4116	6407;6408	6407					0.01825152580613576
DQNPIPVKSE	10	Unmodified	_DQNPIPVKSE_					0	0	0			REV__ENSG00000169933|ENST00000675598|FRMPD4	REV__ENSG00000169933|ENST00000675598|FRMPD4	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.823974609375	2	563.790578	1125.5666	0.80434	0.00045348	-0.99631	-0.00056171	-0.19196	-0.00010823	563.7897938084543	45.364	0.33865	45.364	45.202	45.54	0					18	7	4	0	0	0	0.026606	1	3140	3140		52.937	12.159	1	306500	+		5184	21500	4108	4117	6409	6409					0.008842164011639397
DQPHHRVAQ	9	Unmodified	_DQPHHRVAQ_					0	0	0		ENST00000269097.8_1_17:42148506-42151566:+|nuORF	ENST00000269097.8_1_17:42148506-42151566:+|nuORF	ENST00000269097.8_1_17:42148506-42151566:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2557983398438	2	544.273221	1086.53189	-0.13801	-7.5114E-05	-1.7449	-0.00094972	-1.8829	-0.0010248	544.2722288897505	71.096	0.4675	71.096	70.8	71.267	0					15	7	3	0	0	0	0.027462	1	6858	6858		30.318	4.2543	1	534860			5185	9980	4109	4118	6410	6410					-0.007915618962897497
DQPLIRGKKRA	11	Unmodified	_DQPLIRGKKRA_					0	0	0			REV__ENST00000468290.1_1_9:136198707-136199617:-|nuORF	REV__ENST00000468290.1_1_9:136198707-136199617:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	427.9294128417969	3	427.929844	1280.7677	1.7119	0.00073257	-1.7813	-0.00076226	-0.069373	-2.9687E-05	427.9290217090034	65.493	1.4717	62.547	62.198	63.67	-2.9459					92	28	4	0	0	0	0.71789	1	2616	2616		21.032	0	1	349590	+		5186	20098	4110	4119	6411	6411					0.13854950228324014
DQPPILTTN	9	Unmodified	_DQPPILTTN_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;CSPG4|p.G1481D|1|0.25|ENSG00000173546|chr15:75684743-75684743|C/T|missense_variant	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.2494812011719	2	499.761289	997.508025	0.95934	0.00047944	2.7242	0.0013614	3.6835	0.0018409	499.76226905790907	156.29	0.70691	156.29	155.94	156.65	0					21	13	2	0	0	0	0.027462	1	18283	18283		31.634	9.6744	1	76430			5187	7388	4111	4120	6412	6412					0.0091715982664482
DQPRIEKAL	9	Unmodified	_DQPRIEKAL_					0	0	0			REV__ENST00000467954.5_1_X:48339852-48341236:+|nuORF	REV__ENST00000467954.5_1_X:48339852-48341236:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	534.7778930664062	2	535.303655	1068.59276	0.34897	0.00018681	-1.4494	-0.00077585	-1.1004	-0.00058905	535.3028925971759	75.236	0.74901	72.826	72.679	73.428	-2.4106					30	14	3	0	0	0	0.027462	1	3839	3839		30.318	14.311	1	120410	+		5188	16854	4112	4121	6413	6413					0.061205303632732466
DQPRVLLPL	9	Unmodified	_DQPRVLLPL_					0	0	0		ENSG00000145191|ENST00000648915|EIF2B5;ENST00000491144.5_1_3:183853173-183855624:+|nuORF;EIF2B5|p.L213Pfs*14|1|0.07|ENSG00000145191|chr3:184138027-184138052|TCTCCATTTTCAGAAGACCCAGGGTC/-|frameshift_variant;ENST00000481054.5_1_3:183853173-183856676:+|nuORF	ENSG00000145191|ENST00000648915|EIF2B5	ENSG00000145191|ENST00000648915|EIF2B5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.3114624023438	2	525.818941	1049.62333	-1.3465	-0.00070804	0.69091	0.00036329	-0.65563	-0.00034475	525.8191240032022	69.85	1.3112	66.369	66.057	67.369	-3.4812					56	26	3	0	0	0	0.027462	1	5353	5353		21.96	1.9631	1	365870			5189	5206	4113	4122	6414	6414					0.10050308748327552
DQPRVLLPL	9	Unmodified	_DQPRVLLPL_					0	0	0		ENSG00000145191|ENST00000648915|EIF2B5;ENST00000491144.5_1_3:183853173-183855624:+|nuORF;EIF2B5|p.L213Pfs*14|1|0.07|ENSG00000145191|chr3:184138027-184138052|TCTCCATTTTCAGAAGACCCAGGGTC/-|frameshift_variant;ENST00000481054.5_1_3:183853173-183856676:+|nuORF	ENSG00000145191|ENST00000648915|EIF2B5	ENSG00000145191|ENST00000648915|EIF2B5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	525.818941	1049.62333	-0.94476	-0.00049677	0.56645	0.00029785	-0.37831	-0.00019892	525.8190495810514	68.796	1.1473	66.176	65.869	67.016	-2.6203	-0.0017763	0.00046588	NaN	42.396	55	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	256340			5190	5206	4113	4122							0.10050308748327552
DQPSFKLL	8	Unmodified	_DQPSFKLL_					0	0	0		ENST00000538442.5_2_6:31478290-31478698:+|nuORF	ENST00000538442.5_2_6:31478290-31478698:+|nuORF	ENST00000538442.5_2_6:31478290-31478698:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.2668762207031	2	474.263468	946.512382	0.70072	0.00033233	3.7779	0.0017917	4.4786	0.0021241	474.26513531996795	81.336	0.33115	81.336	81.162	81.493	0					14	7	2	0	0	0	0.028476	1	8360	8360		31.955	0	1	221070			5191	13422	4114	4123	6415	6415					0.03698669040238656
DQPVIWRG	8	Unmodified	_DQPVIWRG_					0	0	0		tr|A0A7D6VPA6|A0A7D6VPA6_9CLOTIron-sulfurclustercarrierproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21945PE=3SV=1	tr|A0A7D6VPA6|A0A7D6VPA6_9CLOTIron-sulfurclustercarrierproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21945PE=3SV=1	tr|A0A7D6VPA6|A0A7D6VPA6_9CLOTIron-sulfurclustercarrierproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21945PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.7675476074219	2	485.758884	969.503215	-0.78022	-0.000379	3.5669	0.0017327	2.7867	0.0013537	485.76111970796745	51.999	0.21162	51.999	51.871	52.083	0					6	4	2	0	0	0	0.028476	1	4055	4055		21.96	0	1	66324			5192	34759	4115	4124	6416	6416					0.017243204745682306
DQPWMPPT	8	Unmodified	_DQPWMPPT_					0	0	0		ENSG00000132424|ENST00000369239|PNISR;ENST00000463021.1_1_6:99858595-99858832:-|nuORF;PNISR|p.P216Lfs*2|1|0.3|ENSG00000132424|chr6:99409199-99409199|G/-|frameshift_variant;nc|ENSG00000132424|Q8TF01-2|PNISR	ENSG00000132424|ENST00000369239|PNISR	ENSG00000132424|ENST00000369239|PNISR	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.7779846191406	2	486.218203	970.421853	-0.21451	-0.0001043	-2.4913	-0.0012113	-2.7058	-0.0013156	486.21663036079065	48.208	0.5638	45.101	44.938	45.502	-3.1077					19	10	2	0	0	0	0.028476	1	2639	2639		29.15	0	1	17218			5193	4138	4116	4125	6417	6417					-0.06454123279706891
DQQEERRRQKQ	11	Unmodified	_DQQEERRRQKQ_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENST00000555762.1_1_14:94517539-94521656:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.3370666503906	3	500.92571	1499.7553	-0.51052	-0.00025573	2.4642	0.0012344	1.9536	0.00097863	500.92678835247176	35.311	0.28069	35.311	35.149	35.429	0					8	5	2	0	0	0	0.026383	1	1768	1768		17.833	3.7471	1	38248			5194	1827	4117	4126	6418	6418					0.02541262027330049
DQQLKGVPI	9	Unmodified	_DQQLKGVPI_					0	0	0			REV__tr|A0A553SPH4|A0A553SPH4_NIACIATP-dependentClpproteaseATP-bindingsubunitOS=NialliacirculansOX=1397GN=CEQ21_26375PE=3SV=1	REV__tr|A0A553SPH4|A0A553SPH4_NIACIATP-dependentClpproteaseATP-bindingsubunitOS=NialliacirculansOX=1397GN=CEQ21_26375PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	499.2867126464844	2	499.287474	996.560395	-0.010404	-5.1946E-06	-0.93647	-0.00046757	-0.94688	-0.00047276	499.28693766889194	79.522	1.6653	77.812	76.789	78.454	-1.7103					98	32	4	0	0	0	0.10363	3	6667	6653;6661;6667		96.19	11.275	1	810360	+		5195	30536	4118	4127	6419;6420;6421	6421					0.061977429602734446
DQRCLRTIL	9	Unmodified	_DQRCLRTIL_					0	0	0		ENSG00000115423|ENST00000389394|DNAH6;nc|ENSG00000115423|Q9C0G6-2|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.326416015625	2	559.310958	1116.60736	0.35624	0.00019925	-3.3681	-0.0018838	-3.0119	-0.0016846	559.3088839783511	58.565	0.48861	58.565	58.363	58.852	0					17	11	2	0	0	0	0.027462	1	5003	5003		26.693	10.22	1	725650			5196	3097	4119	4128	6422	6422					0.05372279239782074
DQRGDLLIE	9	Unmodified	_DQRGDLLIE_					0	0	0		ENST00000487931.1_1_1:78444877-78481928:+|nuORF;ENSG00000162616|ENST00000370763|DNAJB4	ENST00000487931.1_1_1:78444877-78481928:+|nuORF	ENST00000487931.1_1_1:78444877-78481928:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	530.3265380859375	2	529.77747	1057.54039	0.35711	0.00018919	-0.97459	-0.00051631	-0.61747	-0.00032712	529.7768772940608	127.54	1.2337	127.3	127.03	128.27	-0.2359					57	24	4	0	0	0	0.027462	1	12466	12466		20.947	0	1	236880			5197	6203	4120	4129	6423	6423					0.013919472296720414
DQRISARN	8	Unmodified	_DQRISARN_					0	0	0			REV__DEPDC5|p.F415Lfs*35|1|0.66|ENSG00000100150|chr22:31806149-31806173|TTGTAATAGTTTCACCCCACGAATA/-|frameshift_variant	REV__DEPDC5|p.F415Lfs*35|1|0.66|ENSG00000100150|chr22:31806149-31806173|TTGTAATAGTTTCACCCCACGAATA/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	480.7720947265625	2	480.254497	958.494441	-0.71626	-0.00034399	0.3431	0.00016477	-0.37317	-0.00017921	480.2544814089602	32.497	0.69174	29.787	29.63	30.321	-2.7097					18	13	2	0	0	0	0.028476	1	1086	1086		44.117	3.5442	1	25172	+		5198	16288	4121	4130	6424	6424					0.013533468380956037
DQRKLNKV	8	Unmodified	_DQRKLNKV_					0	0	0			REV__nc|ENSG00000204681|Q9UBS5-5|GABBR1	REV__nc|ENSG00000204681|Q9UBS5-5|GABBR1	MULTI-MSMS	OvCa99_classI_Rep5	1	500.7992858886719	2	500.79854	999.582528	-0.42993	-0.00021531	-1.4524	-0.00072734	-1.8823	-0.00094265	500.7972657947846	43.271	1.1099	43.271	42.97	44.08	0					34	12	4	0	0	0	0.42649	1	2839	2839		84.916	5.2029	1	1419700	+		5199	23178	4122	4131	6425	6425					0.08271967428697735
DQRLQRPRLAL	11	Unmodified	_DQRLQRPRLAL_					0	0	0			REV__ENST00000535678.1_1_2:223725777-223773458:+|nuORF	REV__ENST00000535678.1_1_2:223725777-223773458:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	455.2440490722656	3	455.940632	1364.80007	0.20296	9.2537E-05	-1.4809	-0.00067521	-1.278	-0.00058267	456.27432918042194	57.732	1.0596	54.387	54.138	55.197	-3.3449					30	20	2	0	0	0	0.025908	1	3838	3838		21.78	0.94327	1	102010	+		5200	24785	4123	4132	6426	6426					0.13225737631341872
DQRQCLRQG	9	Unmodified	_DQRQCLRQG_					0	0	0		ENST00000416640.2_3_22:21698217-21699360:+|nuORF	ENST00000416640.2_3_22:21698217-21699360:+|nuORF	ENST00000416640.2_3_22:21698217-21699360:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.2919311523438	2	552.272364	1102.53017	-0.26194	-0.00014466	1.9471	0.0010753	1.6851	0.00093066	552.2737893637508	96.118	0.35381	93.692	93.559	93.913	-2.4256					10	6	2	0	0	0	0.027462	1	8464	8464		10.265	0.5596	1	11406			5201	11609	4124	4133	6427	6427					-0.01698938976574027
DQRQGRLD	8	Unmodified	_DQRQGRLD_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.30120849609375	2	494.251954	986.489356	-0.6229	-0.00030787	3.5191	0.0017393	2.8962	0.0014315	494.2536475790521	92.182	1.3642	89.64	89.364	90.728	-2.5425					73	26	4	0	0	0	0.028476	1	8066	8066		73.975	18.471	1	676000	+		5202	28919	4125	4134	6428	6428					-0.004429570245179093
DQRRGQLAG	9	Unmodified	_DQRRGQLAG_					0	0	0			REV__ENST00000419712.7_1_17:27043073-27045143:-|nuORF	REV__ENST00000419712.7_1_17:27043073-27045143:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.8228454589844	2	500.767771	999.52099	-0.21143	-0.00010588	3.0899	0.0015473	2.8785	0.0014415	500.76929515914105	73.447	0.67279	73.447	73.195	73.868	0					38	16	4	0	0	0	0.027433	1	7170	7170		51.335	1.8939	1	6322200	+		5203	24244	4126	4135	6429	6429					0.02121035729430787
DQRRHLCLL	9	Unmodified	_DQRRHLCLL_					0	0	0		ENST00000373210.3_1_1:36320739-36321132:+|nuORF	ENST00000373210.3_1_1:36320739-36321132:+|nuORF	ENST00000373210.3_1_1:36320739-36321132:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.7792358398438	2	577.316574	1152.6186	1.8062	0.0010428	1.1503	0.00066407	2.9565	0.0017068	577.317348611965	83.986	1.0854	83.986	83.504	84.589	0					50	25	3	0	0	0	0.027462	1	8689	8689		29.15	3.5755	1	1834900			5204	11003	4127	4136	6430	6430					0.04839101333891449
DQRRQMVR	8	Unmodified	_DQRRQMVR_					0	0	0			REV__ENSG00000181767|ENST00000313503|OR8H2	REV__ENSG00000181767|ENST00000313503|OR8H2	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.7847900390625	2	544.790724	1087.56689	-6.9442	-0.0037831	-3.7412	-0.0020382	-10.685	-0.0058213	544.7884367491765	160.62	0.76315	159.01	158.71	159.48	-1.6101					32	15	3	0	0	0	0.73938	1	15863	15863		31.955	0	1	60033	+		5205	22248	4128	4137	6431	6431					0.026613576400222883
DQRSISLNR	9	Unmodified	_DQRSISLNR_					0	0	0		tr|A0A553SPD9|A0A553SPD9_NIACIPyruvatedehydrogenaseE1componentsubunitalphaOS=NialliacirculansOX=1397GN=pdhAPE=4SV=1	tr|A0A553SPD9|A0A553SPD9_NIACIPyruvatedehydrogenaseE1componentsubunitalphaOS=NialliacirculansOX=1397GN=pdhAPE=4SV=1	tr|A0A553SPD9|A0A553SPD9_NIACIPyruvatedehydrogenaseE1componentsubunitalphaOS=NialliacirculansOX=1397GN=pdhAPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7984008789062	2	544.793986	1087.57342	-0.77857	-0.00042416	-1.8515	-0.0010087	-2.6301	-0.0014329	545.2933807983718	65.506	0.20057	65.506	65.385	65.586	0					6	4	2	0	0	0	0.027411	1	6024	6024		54.776	20.604	1	126040			5206	34032	4129	4138	6432	6432					0.03313574072399206
DQSFLAPLVT	10	Unmodified	_DQSFLAPLVT_					0	0	0		ENSG00000151466|ENST00000281142|SCLT1;nc|ENSG00000151466|Q96NL6-4|SCLT1;nc|ENSG00000151466|Q96NL6-3|SCLT1;nc|ENSG00000151466|Q96NL6-2|SCLT1	ENSG00000151466|ENST00000281142|SCLT1	ENSG00000151466|ENST00000281142|SCLT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.80615234375	2	545.792589	1089.57063	-1.1378	-0.000621	0.90707	0.00049507	-0.23073	-0.00012593	545.7932924589101	104.63	1.1	104.63	103.73	104.83	0					37	25	2	0	0	0	0.02658	1	11705	11705		45.972	0	1	417740			5207	5555	4130	4139	6433	6433					0.029423058948623293
DQSGDEKLTDE	11	Unmodified	_DQSGDEKLTDE_					0	0	0			REV__nc|ENSG00000240268|A6NHM9|MOXD2P	REV__nc|ENSG00000240268|A6NHM9|MOXD2P	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.91265869140625	3	412.845728	1235.51536	0.43123	0.00017803	0.16955	6.9998E-05	0.60078	0.00024803	412.84581568256027	54.944	0.43196	54.944	54.761	55.193	0					15	9	2	0	0	0	0.025819	1	4471	4471		32.034	9.4725	1	221990	+		5208	29154	4131	4140	6434	6434					-0.09298197154225818
DQSLCYLSI	9	Unmodified	_DQSLCYLSI_					0	0	0			REV__ENSG00000052126|ENST00000429027|PLEKHA5	REV__ENSG00000052126|ENST00000429027|PLEKHA5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.78125	2	521.2497	1040.48485	-0.55277	-0.00028813	-1.1664	-0.00060796	-1.7191	-0.00089609	521.2485837140457	66.816	1.1782	63.326	62.66	63.839	-3.4902					44	23	3	0	0	0	0.027447	1	4899	4899		39.253	0	1	41965	+		5209	16690	4132	4141	6435	6435					-0.033776022823076346
DQSLQMLH	8	Unmodified	_DQSLQMLH_					0	0	0			REV__nc|ENSG00000031003|Q9NYF5-2|FAM13B	REV__nc|ENSG00000031003|Q9NYF5-2|FAM13B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.8074035644531	2	486.234384	970.454216	0.24895	0.00012105	-4.1738	-0.0020295	-3.9249	-0.0019084	486.23243448632405	56.841	0.71221	53.496	53.222	53.934	-3.3449					27	13	3	0	0	0	0.028476	1	3691	3691		40.573	0	1	43175	+		5210	16587	4133	4142	6436	6436					-0.032193358767017344
DQSLQTPAPLF	11	Unmodified	_DQSLQTPAPLF_					0	0	0			REV__ENSG00000100603|ENST00000261531|SNW1	REV__ENSG00000100603|ENST00000261531|SNW1	MSMS	OvCa99_classI_Rep5	1	608.8156127929688	2	608.814053	1215.61355	NaN	NaN	NaN	NaN	NaN	NaN	NaN	164.32	1	164.32	163.82	164.82	0								0	0	0	0.19474	1	19166	19166		26.693	5.746	1		+		5211	17436	4134	4143	6437	6437					0.014370759522535081
DQSVFEKGATN	11	Unmodified	_DQSVFEKGATN_					0	0	0			REV__ENSG00000151320|ENST00000280979|AKAP6	REV__ENSG00000151320|ENST00000280979|AKAP6	MULTI-SECPEP	OvCa99_classI_Rep5	1	597.8150024414062	2	598.283117	1194.55168	1.96	0.0011727	4.3369	0.0025947	6.297	0.0037674	598.2857472398204	129.75	1.2198	129.75	128.93	130.15	0					29	25	2	0	0	0	0.02523	1	14964	14964		14.086	0	1	55983	+		5212	15586	4135	4144	6438	6438					-0.03781275466826628
DQSVSRLAALV	11	Unmodified	_DQSVSRLAALV_					0	0	0			REV__ENST00000471903.2_1:120837853-120854583:+|nuORF	REV__ENST00000471903.2_1:120837853-120854583:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.8092041015625	2	579.827495	1157.64044	-0.50562	-0.00029317	-4.3947	-0.0025481	-4.9003	-0.0028413	579.825803801721	47.243	0.21775	47.243	47.076	47.294	0					5	4	2	0	0	0	0.025605	1	3394	3394		38.754	0	1	98600	+		5213	26298	4136	4145	6439	6439					0.06792184563460069
DQTEIKPPL	9	Unmodified	_DQTEIKPPL_					0	0	0			REV__nc|ENSG00000082212|P23368-2|ME2	REV__nc|ENSG00000082212|P23368-2|ME2	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.79296875	2	520.784764	1039.55498	1.3931	0.00072548	2.7767	0.0014461	4.1698	0.0021716	520.7853318459562	121.81	0.89036	120.78	120.48	121.37	-1.0286					23	16	3	0	0	0	0.027403	1	9311	9311		69.628	5.4204	1	19946	+		5214	17083	4137	4146	6440	6440					0.036780193777985914
DQTKNPNNI	9	Unmodified	_DQTKNPNNI_					0	0	0			REV__ENST00000438282.6_1_3:2613181-3030164:+|nuORF	REV__ENST00000438282.6_1_3:2613181-3030164:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.3368530273438	2	522.259445	1042.50434	0.5336	0.00027868	-1.1527	-0.00060202	-0.61913	-0.00032334	522.2588309736867	113.94	1.1343	113.82	113.61	114.75	-0.11777					29	22	2	0	0	0	0.027462	1	10878	10878		35.152	0	1	32941	+		5215	16157	4138	4147	6441	6441					-0.015215099472015936
DQTLPLNVNP	10	Unmodified	_DQTLPLNVNP_					0	0	0		ENSG00000198183|ENST00000354297|BPIFA1	ENSG00000198183|ENST00000354297|BPIFA1	ENSG00000198183|ENST00000354297|BPIFA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.7957153320312	2	555.793121	1109.57169	0.70403	0.00039129	2.3291	0.0012945	3.0331	0.0016858	555.79433565678	115.56	1.0391	114.16	113.82	114.86	-1.3977					34	20	2	0	0	0	0.59703	1	10782	10782		42.396	8.2236	1	192940			5216	8793	4139	4148	6442	6442					0.021285202637500333
DQTLREQVL	9	Unmodified	_DQTLREQVL_					0	0	0			REV__ENSG00000087302|ENST00000261700|RTRAF	REV__ENSG00000087302|ENST00000261700|RTRAF	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3195190429688	2	551.29857	1100.58259	-1.0457	-0.00057651	2.4745	0.0013642	1.4288	0.00078768	551.2998131536118	49.711	0.3496	49.711	49.507	49.856	0					14	7	3	0	0	0	0.027185	1	3743	3743		62.107	10.772	1	112920	+		5217	17164	4140	4149	6443	6443					0.03631922638055585
DQTQRKVVV	9	Unmodified	_DQTQRKVVV_					0	0	0		ENSG00000149100|ENST00000531120|EIF3M;nc|ENSG00000149100|Q7L2H7-2|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3433227539062	2	536.809105	1071.60366	-0.46491	-0.00024957	0.34919	0.00018745	-0.11572	-6.2122E-05	536.8086854172152	53.28	0.82238	53.28	52.741	53.564	0					32	18	3	0	0	0	0.027462	1	4188	4188		18.262	0	1	274600			5218	5441	4141	4150	6444	6444					0.07071932737562747
DQTQTHQL	8	Unmodified	_DQTQTHQL_					0	0	0			REV__ENSG00000146350|ENST00000398212|TBC1D32	REV__ENSG00000146350|ENST00000398212|TBC1D32	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.2549133300781	2	485.733063	969.451573	-0.36506	-0.00017732	-3.3513	-0.0016278	-3.7163	-0.0018052	485.73126449051307	62.975	1.1166	59.502	58.897	60.014	-3.4735					45	22	3	0	0	0	0.028476	1	4376	4376		58.782	0	1	85899	+		5219	20008	4142	4151	6445	6445					-0.034374680099972466
DQTRILNGF	9	Unmodified	_DQTRILNGF_					0	0	0		ENST00000479720.5_1_3:188841381-188841435:+|nuORF	ENST00000479720.5_1_3:188841381-188841435:+|nuORF	ENST00000479720.5_1_3:188841381-188841435:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.8335571289062	2	532.28018	1062.54581	-0.37583	-0.00020005	3.8581	0.0020536	3.4823	0.0018536	532.2820830707599	61.847	0.41643	61.847	61.665	62.081	0					17	9	3	0	0	0	0.027455	1	5503	5503		34.173	0	1	343340			5220	12508	4143	4152	6446	6446					0.01703670812139535
DQTRPLLYL	9	Unmodified	_DQTRPLLYL_					0	0	0			REV__ENST00000588701.1_1_17:75370096-75370759:-|nuORF	REV__ENST00000588701.1_1_17:75370096-75370759:-|nuORF	MSMS	OvCa99_classI_Rep5	1	559.8153686523438	2	559.813856	1117.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.46	1	149.46	148.96	149.96	0								0	0	0	0.17513	1	17496	17496		41.427	0.64845	1		+		5221	27891	4144	4153	6447	6447					0.05905701023084475
DQVEQMKMN	9	Unmodified	_DQVEQMKMN_					0	0	0		tr|A0A553SL42|A0A553SL42_NIACIATP-dependentDNAhelicaseRecQOS=NialliacirculansOX=1397GN=CEQ21_19910PE=4SV=1	tr|A0A553SL42|A0A553SL42_NIACIATP-dependentDNAhelicaseRecQOS=NialliacirculansOX=1397GN=CEQ21_19910PE=4SV=1	tr|A0A553SL42|A0A553SL42_NIACIATP-dependentDNAhelicaseRecQOS=NialliacirculansOX=1397GN=CEQ21_19910PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	561.75048828125	2	561.749541	1121.48453	1.0299	0.00057854	1.3286	0.00074635	2.3585	0.0013249	561.7502055190915	122.3	1.4686	121.28	120.8	122.27	-1.0286					42	27	2	0	0	0	0.55011	1	9392	9392		37.812	3.8899	1	102040			5222	33683	4145	4154	6448	6448					-0.07135345273786697
DQVEQMKMN	9	Unmodified	_DQVEQMKMN_					0	0	0		tr|A0A553SL42|A0A553SL42_NIACIATP-dependentDNAhelicaseRecQOS=NialliacirculansOX=1397GN=CEQ21_19910PE=4SV=1	tr|A0A553SL42|A0A553SL42_NIACIATP-dependentDNAhelicaseRecQOS=NialliacirculansOX=1397GN=CEQ21_19910PE=4SV=1	tr|A0A553SL42|A0A553SL42_NIACIATP-dependentDNAhelicaseRecQOS=NialliacirculansOX=1397GN=CEQ21_19910PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	561.749541	1121.48453	-0.21914	-0.0001231	2.3411	0.0013151	2.1219	0.001192	561.7508438253935	121.72	0.74249	121.52	121.2	121.94	-0.19719	0.18122	0.0011161	NaN	37.812	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41681			5223	33683	4145	4154							-0.07135345273786697
DQVEQMKMN	9	Unmodified	_DQVEQMKMN_					0	0	0		tr|A0A553SL42|A0A553SL42_NIACIATP-dependentDNAhelicaseRecQOS=NialliacirculansOX=1397GN=CEQ21_19910PE=4SV=1	tr|A0A553SL42|A0A553SL42_NIACIATP-dependentDNAhelicaseRecQOS=NialliacirculansOX=1397GN=CEQ21_19910PE=4SV=1	tr|A0A553SL42|A0A553SL42_NIACIATP-dependentDNAhelicaseRecQOS=NialliacirculansOX=1397GN=CEQ21_19910PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	561.749541	1121.48453	1.5754	0.000885	0.51746	0.00029068	2.0929	0.0011757	561.7497335181421	122.59	1.041	121.23	120.96	122	-1.3666	-0.11485	-0.00093271	NaN	37.812	44	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82022			5224	33683	4145	4154							-0.07135345273786697
DQVFAHIK	8	Unmodified	_DQVFAHIK_					0	0	0			REV__ENSG00000137200|ENST00000373451|CMTR1	REV__ENSG00000137200|ENST00000373451|CMTR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.7757568359375	2	479.261259	956.507966	0.28561	0.00013688	2.82	0.0013515	3.1056	0.0014884	479.2626490425695	72.796	0.42511	72.796	72.61	73.035	0					18	10	2	0	0	0	0.028476	1	7080	7080		38.806	3.6054	1	799670	+		5225	19440	4146	4155	6449	6449					0.02797204617331772
DQVFWRFSLSQ	11	Unmodified	_DQVFWRFSLSQ_					0	0	0			REV__ENSG00000171044|ENST00000416569|XKR6	REV__ENSG00000171044|ENST00000416569|XKR6	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.25579833984375	3	471.570093	1411.68845	0.46191	0.00021782	-4.1348	-0.0019498	-3.6728	-0.001732	471.5679978962985	46.018	0.30825	46.018	45.89	46.198	0					9	6	2	0	0	0	0.026232	1	3232	3232		11.455	0.45641	1	52143	+		5226	21586	4147	4156	6450	6450					-0.0009274151648241968
DQVKKQNTL	9	Unmodified	_DQVKKQNTL_					0	0	0			REV__L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|45|1|sense	REV__L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|45|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.288330078125	2	537.301113	1072.58767	1.8824	0.0010114	3.3505	0.0018002	5.2329	0.0028116	537.3032400586006	116.66	1.5949	116.66	115.63	117.23	0					55	34	3	0	0	0	0.027425	1	13306	13306		60.118	8.9256	1	484850	+		5227	28514	4148	4157	6451	6451					0.054282265006804664
DQVQHFKV	8	Unmodified	_DQVQHFKV_					0	0	0		ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.7992858886719	2	500.764166	999.513779	-0.91538	-0.00045839	-2.8206	-0.0014125	-3.736	-0.0018709	500.7626713032894	43.577	0.85232	43.577	43.014	43.866	0					30	19	2	0	0	0	0.028476	1	2839	2839		79.451	16.145	1	359760			5228	5708	4149	4158	6452	6452					0.014003031290030776
DQVTKEVII	9	Unmodified	_DQVTKEVII_					0	0	0			REV__ENSG00000131558|ENST00000253861|EXOC4	REV__ENSG00000131558|ENST00000253861|EXOC4	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.2913818359375	2	522.800414	1043.58628	0.37183	0.00019439	1.6011	0.00083705	1.9729	0.0010314	522.8011746053454	81.058	0.66889	81.058	80.786	81.455	0					22	15	2	0	0	0	0.027311	1	8350	8350		74.165	14.047	1	628490	+		5229	19022	4150	4159	6453	6453					0.06622592411895312
DQVTKEVII	9	Unmodified	_DQVTKEVII_					0	0	0			REV__ENSG00000131558|ENST00000253861|EXOC4	REV__ENSG00000131558|ENST00000253861|EXOC4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	522.800414	1043.58628	0.75512	0.00039478	-1.4141	-0.0007393	-0.65899	-0.00034452	522.7994357257026	82.429	1.0367	80.83	80.332	81.369	-1.5988	-0.033823	-0.0016077	NaN	74.165	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43393	+		5230	19022	4150	4159							0.06622592411895312
DQVTKEVII	9	Unmodified	_DQVTKEVII_					0	0	0			REV__ENSG00000131558|ENST00000253861|EXOC4	REV__ENSG00000131558|ENST00000253861|EXOC4	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	522.800414	1043.58628	-0.50167	-0.00026228	-0.32578	-0.00017032	-0.82745	-0.00043259	522.8001616890531	83.366	0.92621	80.704	80.437	81.363	-2.6629	-0.16035	-0.00046976	NaN	74.165	33	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89841	+		5231	19022	4150	4159							0.06622592411895312
DQWKELSHE	9	Unmodified	_DQWKELSHE_					0	0	0		DCUN1D2-PTPN1|1|fusion;ENSG00000196396|ENST00000371621|PTPN1;PARD6B-PTPN1|1|fusion	DCUN1D2-PTPN1|1|fusion	DCUN1D2-PTPN1|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.2952270507812	2	586.272552	1170.53055	2.6606	0.0015599	-2.0604	-0.001208	0.60025	0.00035191	586.7727219259107	99.116	0.47542	99.116	98.801	99.276	0					16	11	2	0	0	0	0.027462	1	10967	10967		26.693	0	1	271320			5232	714	4151	4160	6454	6454					-0.04789240775721737
DQWQPTHPSLT	11	Unmodified	_DQWQPTHPSLT_					0	0	0			REV__ALK|p.V503_Q512del|1|0.24|ENSG00000171094|chr2:29320760-29320789|CCTGGAACCGGGCATCCTTTAGGGTCCTGA/-|inframe_deletion	REV__ALK|p.V503_Q512del|1|0.24|ENSG00000171094|chr2:29320760-29320789|CCTGGAACCGGGCATCCTTTAGGGTCCTGA/-|inframe_deletion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.7585754394531	3	437.210565	1308.60986	-0.28359	-0.00012399	-0.8076	-0.00035309	-1.0912	-0.00047708	437.2090932158121	82.583	0.29456	79.9	79.684	79.979	-2.683					8	5	2	0	0	0	0.026204	1	6813	6813		11.932	0	1	9538.8	+		5233	15589	4152	4161	6455	6455					-0.03209593821566159
DQWTELAQ	8	Unmodified	_DQWTELAQ_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF;ENST00000581790.5_1_17:29664842-29667553:+|nuORF;ENST00000471572.6_1_17:29664842-29665128:+|nuORF	nc|ENSG00000196712|P21359-2|NF1;ENST00000471572.6_1_17:29664842-29665128:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.76617431640625	2	495.729989	989.445425	-1.1262	-0.0005583	-0.53972	-0.00026755	-1.6659	-0.00082585	495.730191533701	72.111	0.48827	68.655	68.412	68.9	-3.4563					12	9	2	0	0	0	0.028476	1	5511	5511		27.882	0	1	20166			5234	8645;12384	4153	4162	6456	6456					-0.04971986241525883
DQWTTIKEI	9	Unmodified	_DQWTTIKEI_					0	0	0			REV__ENSG00000018408|ENST00000360632|WWTR1	REV__ENSG00000018408|ENST00000360632|WWTR1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.2980346679688	2	567.295496	1132.57644	0.96103	0.00054519	2.4931	0.0014143	3.4541	0.0019595	567.2967185608663	128.69	1.2374	128.46	128.13	129.37	-0.22696					75	24	5	0	0	0	0.44248	1	12629	12629		47.96	3.5823	1	313380	+		5235	16530	4154	4163	6457	6457					0.015454044065336348
DQWYQSVE	8	Unmodified	_DQWYQSVE_					0	0	0			REV__ENST00000583137.1_1_18:9708365-9723638:+|nuORF	REV__ENST00000583137.1_1_18:9708365-9723638:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.8204956054688	2	527.727446	1053.44034	-0.6289	-0.00033189	0.52157	0.00027524	-0.10734	-5.6644E-05	527.7276138339902	64.185	0.63435	60.71	60.49	61.125	-3.475					20	12	2	0	0	0	0.028476	1	4547	4547		20.947	0	1	62029	+		5236	27834	4155	4164	6458	6458					-0.08424290104130705
DQYNSRDGQ	9	Unmodified	_DQYNSRDGQ_					0	0	0			REV__ENSG00000135540|ENST00000343505|NHSL1	REV__ENSG00000135540|ENST00000343505|NHSL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.7832641601562	2	541.728509	1081.44246	-0.02884	-1.5624E-05	-0.36968	-0.00020027	-0.39852	-0.00021589	541.7281481286872	69.056	0.57413	69.056	68.815	69.39	0					26	13	3	0	0	0	0.027462	1	6580	6580		13.454	3.1888	1	845670	+		5237	19299	4156	4165	6459	6459					-0.09499861366339246
DQYSCALTGPV	11	Unmodified	_DQYSCALTGPV_					0	0	0		ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	ENSG00000172893|ENST00000355527|DHCR7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	576.3549194335938	2	577.263339	1152.51212	-1.6571	-0.00095656	1.9393	0.0011195	0.28219	0.0001629	577.7645503055704	73.178	0.43564	69.782	69.543	69.979	-3.3961					12	8	2	0	0	0	0.025406	1	5635	5635		31.634	0	1	13456			5238	7327	4157	4166	6460	6460					-0.05803118741960134
DRAKQLVSH	9	Unmodified	_DRAKQLVSH_					0	0	0			REV__nc|ENSG00000117682|Q86SQ9-3|DHDDS	REV__nc|ENSG00000117682|Q86SQ9-3|DHDDS	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.3434448242188	2	527.293622	1052.57269	-1.1216	-0.00059142	-1.8794	-0.00099102	-3.0011	-0.0015824	527.2926918740443	69.766	0.97685	69.766	69.552	70.528	0					28	23	2	0	0	0	0.027462	1	6714	6714		45.972	6.7194	1	216970	+		5239	18364	4158	4167	6461	6461					0.048507794233501045
DRAKQLVSH	9	Unmodified	_DRAKQLVSH_					0	0	0			REV__nc|ENSG00000117682|Q86SQ9-3|DHDDS	REV__nc|ENSG00000117682|Q86SQ9-3|DHDDS	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	527.293622	1052.57269	-1.9163	-0.0010105	4.6679	0.0024614	2.7516	0.0014509	527.2963322730363	72.988	0.82259	69.592	69.301	70.124	-3.3961	-0.087296	0.0025603	NaN	51.193	40	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263330	+		5240	18364	4158	4167							0.048507794233501045
DRARPRDRRA	10	Unmodified	_DRARPRDRRA_					0	0	0			REV__ENST00000559665.6_1_15:64985359-64995395:-|nuORF	REV__ENST00000559665.6_1_15:64985359-64995395:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	634.85888671875	2	634.855775	1267.697	0.91744	0.00058244	3.0439	0.0019324	3.9613	0.0025149	634.8576710032044	97.52	2.7566	95.141	94.708	97.465	-2.3786					143	53	5	0	0	0	0.55109	1	8672	8672		47.96	7.1814	1	2559000	+		5241	27601	4159	4168	6462	6462					0.07385669963355213
DRAVTQISVDL	11	Unmodified	_DRAVTQISVDL_					0	0	0		NUP133|p.G909Efs*40|1|0.06|ENSG00000069248|chr1:229460729-229460730|-/ATTCT|frameshift_variant;ENSG00000069248|ENST00000261396|NUP133	NUP133|p.G909Efs*40|1|0.06|ENSG00000069248|chr1:229460729-229460730|-/ATTCT|frameshift_variant	NUP133|p.G909Efs*40|1|0.06|ENSG00000069248|chr1:229460729-229460730|-/ATTCT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	608.833251953125	2	608.830234	1215.64592	0.21187	0.000129	3.097	0.0018856	3.3089	0.0020146	608.831874040744	137.56	0.72951	136.48	136.24	136.97	-1.0858					29	14	3	0	0	0	0.69015	1	11218	11218		33.039	2.4705	1	42194			5242	1405	4160	4169	6463	6463					0.04671863355292771
DRCITQLFF	9	Carbamidomethyl (C)	_DRC(Carbamidomethyl (C))ITQLFF_	DRC(1)ITQLFF		DRC(48)ITQLFF		0	1	0		ENSG00000221996|ENST00000624801|OR52B4	ENSG00000221996|ENST00000624801|OR52B4	ENSG00000221996|ENST00000624801|OR52B4	MULTI-MSMS	OvCa9_classI_Rep3	3	600.2984008789062	2	600.297516	1198.58048	2.214	0.0013291	-0.095959	-5.7604E-05	2.1181	0.0012715	600.2975706629667	71.676	3.4899	69.074	67.52	71.01	-2.6023					163	69	5	0	0	0	0.44568	1	3380	3380		47.657	6.2307	1	949150			5243	9244	4161	4170	6464	6464	92				-0.010868293714338506
DRCYNCGGL	9	Unmodified	_DRCYNCGGL_					0	0	0		nc|ENSG00000187772|Q6ZN17-2|LIN28B;ENSG00000131914|ENST00000326279|LIN28A;ENSG00000187772|ENST00000345080|LIN28B	nc|ENSG00000187772|Q6ZN17-2|LIN28B	nc|ENSG00000187772|Q6ZN17-2|LIN28B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.8055114746094	2	500.702394	999.390235	0.95656	0.00047895	-3.2981	-0.0016514	-2.3415	-0.0011724	500.70028441005303	85.68	0.54337	83.034	82.8	83.344	-2.6463					13	10	2	0	0	0	0.027426	1	7203	7203		53.351	10.877	1	21763			5244	4098	4162	4171	6465	6465					-0.10948439305286684
DRCYNCGGL	9	Unmodified	_DRCYNCGGL_					0	0	0		nc|ENSG00000187772|Q6ZN17-2|LIN28B;ENSG00000131914|ENST00000326279|LIN28A;ENSG00000187772|ENST00000345080|LIN28B	nc|ENSG00000187772|Q6ZN17-2|LIN28B	nc|ENSG00000187772|Q6ZN17-2|LIN28B	MULTI-MATCH	OvCa9_classI_Rep3	3		2	500.702394	999.390235	-1.3891	-0.00069551	-0.96155	-0.00048145	-2.3506	-0.001177	500.701418422683	85.172	0.5911	82.952	82.744	83.335	-2.2204	-0.04082	0.00051629	NaN	53.351	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23996			5245	4098	4162	4171							-0.10948439305286684
DRDQIDDDD	9	Unmodified	_DRDQIDDDD_					0	0	0			REV__OSGIN2|p.Y428Sfs*2|1|0.07|ENSG00000164823|chr8:89925297-89925297|A/-|frameshift_variant	REV__OSGIN2|p.Y428Sfs*2|1|0.07|ENSG00000164823|chr8:89925297-89925297|A/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.82666015625	2	553.715264	1105.41598	2.3256	0.0012877	3.5427	0.0019617	5.8683	0.0032494	553.7171795818467	87.734	0.54076	87.734	87.546	88.087	0					15	12	2	0	0	0	0.027462	1	9323	9323		20.947	0	1	302260	+		5246	21024	4163	4172	6466	6466					-0.1325159504833664
DRDRKLKRIFR	11	Unmodified	_DRDRKLKRIFR_					0	0	0		L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|143|3|sense	L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|143|3|sense	L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|143|3|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	501.6334228515625	3	501.639064	1501.89536	-7.1575	-0.0035905	-2.8121	-0.0014107	-9.9696	-0.0050012	501.63774554440306	163.54	2.3462	162.14	160.37	162.72	-1.3925					135	52	3	0	0	0	0.72557	1	14233	14233		8.0344	1.7135	1	91935			5247	14740	4164	4173	6467	6467					0.16449090822356993
DREQLVKTLLR	11	Unmodified	_DREQLVKTLLR_					0	0	0			REV__ENSG00000102967|ENST00000219240|DHODH	REV__ENSG00000102967|ENST00000219240|DHODH	MSMS	OvCa9_classI_Rep4_	4	457.60791015625	3	457.608659	1369.80415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	158.41	1	156.82	156.32	157.32	-1.5858								0	0	0	0.19474	1	15644	15644		22.562	1.5294	1		+		5248	17584	4165	4174	6468	6468					0.1340378233435331
DRERVLRRYLP	11	Unmodified	_DRERVLRRYLP_					0	0	0		ENST00000359867.7_2_22:38699234-38714066:-|nuORF	ENST00000359867.7_2_22:38699234-38714066:-|nuORF	ENST00000359867.7_2_22:38699234-38714066:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	491.7868347167969	3	491.61967	1471.83718	3.6644	0.0018015	1.9924	0.00097952	5.6568	0.002781	491.954721404366	26.264	0.42267	23.554	23.418	23.841	-2.7097					11	8	2	0	0	0	0.026403	1	332	332		15.333	6.1213	1	14648			5249	10760	4166	4175	6469	6469					0.12013409177097856
DRFPLLTKL	9	Unmodified	_DRFPLLTKL_					0	0	0		tr|A0A553SMB1|A0A553SMB1_NIACIMannose-6-phosphateisomeraseOS=NialliacirculansOX=1397GN=manAPE=3SV=1	tr|A0A553SMB1|A0A553SMB1_NIACIMannose-6-phosphateisomeraseOS=NialliacirculansOX=1397GN=manAPE=3SV=1	tr|A0A553SMB1|A0A553SMB1_NIACIMannose-6-phosphateisomeraseOS=NialliacirculansOX=1397GN=manAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	551.8342895507812	2	551.834591	1101.65463	-1.4468	-0.00079841	1.2828	0.00070792	-0.16398	-9.0489E-05	551.8352363148457	101.35	1.3104	99.741	99.446	100.76	-1.6053					67	24	4	0	0	0	0.3249	1	6942	6942		60.118	1.3363	1	510450			5250	33820	4167	4176	6470	6470					0.10786881782405544
DRFSESILTYV	11	Unmodified	_DRFSESILTYV_					0	0	0		LMBR1-PTPRN2|2|fusion;nc|ENSG00000155093|Q92932-2|PTPRN2;LMBR1-PTPRN2|3|fusion;PTPRN2|p.P488Hfs*30|1|0.11|ENSG00000155093|chr7:158133770-158133771|-/AAGGT|frameshift_variant;nc|ENSG00000155093|Q92932-4|PTPRN2;ENSG00000155093|ENST00000389418|PTPRN2;nc|ENSG00000155093|Q92932-3|PTPRN2	LMBR1-PTPRN2|2|fusion	LMBR1-PTPRN2|2|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.22491455078125	3	443.894354	1328.66123	0.59847	0.00026566	-2.6071	-0.0011573	-2.0087	-0.00089163	443.89317794760785	29.651	0.24955	29.651	29.486	29.735	0					8	4	2	0	0	0	0.026068	1	1074	1074		27.644	2.5179	1	98480			5251	14798	4168	4177	6471	6471					0.010047301524764407
DRGEDRKR	8	Unmodified	_DRGEDRKR_					0	0	0			REV__chr10:100781365-100824648|110|12.66|0.2|6.01|+|2|PAX2,PAX2|1	REV__chr10:100781365-100824648|110|12.66|0.2|6.01|+|2|PAX2,PAX2|1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.2706298828125	2	516.270678	1030.5268	-0.62118	-0.0003207	0.47258	0.00024398	-0.1486	-7.6717E-05	516.2707114954194	23.962	0.25054	23.962	23.836	24.086	0					7	4	2	0	0	0	0.70469	1	395	395		42.396	0	1	76436	+		5252	15839	4169	4178	6472	6472					0.01276134241084037
DRGLLRLN	8	Unmodified	_DRGLLRLN_					0	0	0		nc|ENSG00000172508|A5YM72-4|CARNS1;ENSG00000172508|ENST00000687366|CARNS1;nc|ENSG00000172508|A5YM72-3|CARNS1;nc|ENSG00000172508|A5YM72|CARNS1;nc|ENSG00000172508|A5YM72-2|CARNS1	nc|ENSG00000172508|A5YM72-4|CARNS1	nc|ENSG00000172508|A5YM72-4|CARNS1	MULTI-MSMS	OvCa9_classI_Rep3	3	478.7848205566406	2	478.785433	955.556313	-3.0173	-0.0014446	2.9044	0.0013906	-0.11287	-5.4041E-05	478.78669233564773	146.16	1.5937	145.21	144.8	146.39	-0.95947					82	31	4	0	0	0	0.7549	1	12297	12297		24.203	4.206	1	384210			5253	7302	4170	4179	6473	6473					0.0767569825721921
DRGLYEDCS	9	Unmodified	_DRGLYEDCS_					0	0	0		ENST00000587936.5_1_16:4862027-4863884:-|nuORF;nc|ENSG00000140632|Q49A26-5|GLYR1;nc|ENSG00000140632|Q49A26-4|GLYR1;nc|ENSG00000140632|Q49A26-2|GLYR1;nc|ENSG00000140632|Q49A26-3|GLYR1;ENSG00000140632|ENST00000321919|GLYR1	ENST00000587936.5_1_16:4862027-4863884:-|nuORF	ENST00000587936.5_1_16:4862027-4863884:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.2781982421875	2	529.216388	1056.41822	-1.0828	-0.00057306	2.0776	0.0010995	0.99478	0.00052645	529.2175030871504	47.009	0.40976	43.936	43.655	44.065	-3.0724					13	7	2	0	0	0	0.027462	1	2506	2506		27.882	0	1	20799			5254	4865	4171	4180	6474	6474					-0.10772837844228889
DRGMSGVVDG	10	Unmodified	_DRGMSGVVDG_					0	0	0			REV__tr|A0A553SNT1|A0A553SNT1_NIACITIGR00282familymetallophosphoesteraseOS=NialliacirculansOX=1397GN=CEQ21_25105PE=4SV=1	REV__tr|A0A553SNT1|A0A553SNT1_NIACITIGR00282familymetallophosphoesteraseOS=NialliacirculansOX=1397GN=CEQ21_25105PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	496.72686767578125	2	496.726923	991.439294	2.0848	0.0010356	-1.8715	-0.00092964	0.21322	0.00010591	496.7256667466894	56.454	1.7894	53.303	52.476	54.265	-3.1504					88	62	2	0	0	0	0.83835	1	1582	1582		14.137	1.1779	1	26855	+		5255	30447	4172	4181	6475	6475					-0.056768277446849424
DRGNILVIQDG	11	Unmodified	_DRGNILVIQDG_					0	0	0			REV__nc|ENSG00000070159|P26045-3|PTPN3	REV__nc|ENSG00000070159|P26045-3|PTPN3	MULTI-MSMS	OvCa9_classI_Rep4_	4	600.3230590820312	2	600.322576	1198.6306	-2.8982	-0.0017399	4.3194	0.002593	1.4212	0.00085316	600.3250269871453	152.11	1.1286	150.68	150.36	151.49	-1.435					68	24	4	0	0	0	0.72064	1	15100	15100		22.58	1.6327	1	134150	+		5256	16877	4173	4182	6476	6476					0.03922996558071645
DRGPLRRPAL	10	Unmodified	_DRGPLRRPAL_					0	0	0			REV__ENSG00000140044.13,JDP2,chr14,+,I2.1,75428253,75428356|147|3.96|1|intron	REV__ENSG00000140044.13,JDP2,chr14,+,I2.1,75428253,75428356|147|3.96|1|intron	MULTI-MSMS	OvCa9_classI_Rep2	2	575.84375	2	575.843813	1149.67307	-2.1491	-0.0012375	0.86974	0.00050083	-1.2794	-0.00073671	575.8441928035448	141.47	4.0925	141.24	139.21	143.3	-0.22696					166	82	3	0	0	0	0.77039	1	14201	14201		22.58	0	1	100260	+		5257	19651	4174	4183	6477	6477					0.10422436476983421
DRGQLIKSK	9	Unmodified	_DRGQLIKSK_					0	0	0		ENST00000469726.5_1_1:17942561-18023872:+|nuORF;nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-3|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-2|ARHGEF10L;ENSG00000074964|ENST00000361221|ARHGEF10L	ENST00000469726.5_1_1:17942561-18023872:+|nuORF	ENST00000469726.5_1_1:17942561-18023872:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.7853393554688	2	522.811648	1043.60874	-0.51529	-0.0002694	4.2829	0.0022392	3.7676	0.0019698	522.8138468353504	74.897	1.3053	71.667	71.144	72.449	-3.2308					57	26	4	0	0	0	0.027462	1	5949	5949		31.53	7.0106	1	327440			5258	12349	4175	4184	6478	6478					0.08868236600187629
DRGTKIVK	8	Unmodified	_DRGTKIVK_					0	0	0		tr|A0A7D7A2G7|A0A7D7A2G7_9CLOTBasal-bodyrodmodificationproteinFlgDOS=ClostridiumintestinaleOX=36845GN=HZF06_16850PE=3SV=1	tr|A0A7D7A2G7|A0A7D7A2G7_9CLOTBasal-bodyrodmodificationproteinFlgDOS=ClostridiumintestinaleOX=36845GN=HZF06_16850PE=3SV=1	tr|A0A7D7A2G7|A0A7D7A2G7_9CLOTBasal-bodyrodmodificationproteinFlgDOS=ClostridiumintestinaleOX=36845GN=HZF06_16850PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.61236572265625	2	458.782359	915.550165	0.536	0.00024591	-0.49321	-0.00022628	0.042784	1.9628E-05	458.7819282613829	32.565	0.93676	29.87	29.515	30.452	-2.6954					28	21	2	0	0	0	0.028476	1	857	857		20.947	2.6225	1	11987			5259	36077	4176	4185	6479	6479					0.08901180025713984
DRIFFWVFWPI	11	Unmodified	_DRIFFWVFWPI_					0	0	0			REV__tr|A0A553SUN9|A0A553SUN9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03095PE=4SV=1	REV__tr|A0A553SUN9|A0A553SUN9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03095PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	509.6058654785156	3	509.271207	1524.79179	0.77642	0.00039541	0.0039401	2.0066E-06	0.78036	0.00039741	509.2711434456893	66.676	1.6117	63.788	63.477	65.089	-2.8873					96	31	5	0	0	0	0.70032	2	2757	2757;2799		29.551	2.801	1	276460	+		5260	31102	4177	4186	6480;6481	6480					0.050387906619789646
DRIGKKPVL	9	Unmodified	_DRIGKKPVL_					0	0	0		tr|A0A553SMZ0|A0A553SMZ0_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_23435PE=4SV=1	tr|A0A553SMZ0|A0A553SMZ0_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_23435PE=4SV=1	tr|A0A553SMZ0|A0A553SMZ0_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_23435PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	513.3270874023438	2	513.326934	1024.63931	-0.72981	-0.00037463	-1.1237	-0.00057681	-1.8535	-0.00095145	513.3270041871727	67.528	2.3815	64.867	64.644	67.025	-2.661					66	47	2	0	0	0	0.38529	2	5283	5283;5303		53.351	2.1588	1	1844100			5261	33888	4178	4187	6482;6483	6482					0.12798014985219197
DRILHKKER	9	Unmodified	_DRILHKKER_					0	0	0		tr|A0A553SJL3|A0A553SJL3_NIACIChromatetransporterOS=NialliacirculansOX=1397GN=CEQ21_16995PE=3SV=1	tr|A0A553SJL3|A0A553SJL3_NIACIChromatetransporterOS=NialliacirculansOX=1397GN=CEQ21_16995PE=3SV=1	tr|A0A553SJL3|A0A553SJL3_NIACIChromatetransporterOS=NialliacirculansOX=1397GN=CEQ21_16995PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8560791015625	2	597.856921	1193.69929	-2.4902	-0.0014888	1.4044	0.0008396	-1.0859	-0.00064919	597.8575960796461	144.35	4.0594	144.12	142.06	146.12	-0.22696					210	81	4	0	0	0	0.69123	1	14490	14490		20.947	0	1	136500			5262	33513	4179	4188	6484	6484					0.11018705648439209
DRIQVWFQNR	10	Unmodified	_DRIQVWFQNR_					0	0	0		nc|ENSG00000100987|Q9NZR4-5|VSX1;nc|ENSG00000100987|Q9NZR4-8|VSX1;ENSG00000100987|ENST00000376709|VSX1;ENSG00000119614|ENST00000261980|VSX2	nc|ENSG00000100987|Q9NZR4-5|VSX1	nc|ENSG00000100987|Q9NZR4-5|VSX1	MULTI-MSMS	OvCa99_classI_Rep5	1	454.5723571777344	3	454.573949	1360.70002	0.050904	2.314E-05	-3.127	-0.0014215	-3.0761	-0.0013983	454.5723982005761	35.588	0.46164	35.588	35.384	35.846	0					25	9	4	0	0	0	0.69928	1	1811	1811		30.569	1.9921	1	475900			5263	2129	4180	4189	6485	6485					0.034095002974936506
DRKAAVSHWQ	10	Unmodified	_DRKAAVSHWQ_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	599.31298828125	2	599.309803	1196.60505	-0.22328	-0.00013381	3.4828	0.0020873	3.2595	0.0019535	599.3117934562655	69.545	1.6607	66.064	65.614	67.275	-3.4812					71	33	3	0	0	0	0.39172	1	5205	5205		69.628	7.5202	1	904750			5264	6867	4181	4190	6486	6486					0.014615668263104453
DRKESHLLN	9	Unmodified	_DRKESHLLN_					0	0	0			REV__nc|ENSG00000058272|O14974-5|PPP1R12A	REV__nc|ENSG00000058272|O14974-5|PPP1R12A	MULTI-MSMS	OvCa9_classI_Rep4_	4	556.297607421875	2	556.296362	1110.57817	-0.88867	-0.00049436	2.2507	0.001252	1.362	0.00075767	556.297489303825	146.66	1.1662	145.22	144.86	146.02	-1.4357					51	22	3	0	0	0	0.53483	1	14446	14446		39.253	2.8061	1	134020	+		5265	16726	4182	4191	6487	6487					0.027304582151600698
DRKITIFE	8	Unmodified	_DRKITIFE_					0	0	0		ENSG00000163217|ENST00000295379|BMP10	ENSG00000163217|ENST00000295379|BMP10	ENSG00000163217|ENST00000295379|BMP10	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.2887878417969	2	511.287474	1020.5604	0.012984	6.6386E-06	0.033611	1.7185E-05	0.046595	2.3823E-05	511.28747165700065	96.247	1.9151	93.821	93.254	95.169	-2.4256					85	33	5	0	0	0	0.55617	1	8516	8516		71.877	2.2498	1	1242600			5266	6278	4183	4192	6488	6488					0.05093742960275449
DRKKVTLGT	9	Unmodified	_DRKKVTLGT_					0	0	0		ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.3064880371094	2	509.306198	1016.59784	-1.8721	-0.00095349	1.486	0.0007568	-0.38619	-0.00019669	509.306823448672	147.28	1.1942	145.84	145.53	146.73	-1.4351					49	23	3	0	0	0	0.66262	1	14481	14481		24.519	1.4767	1	91709			5267	6859	4184	4193	6489	6489					0.09020834225918861
DRKPAAALDL	10	Unmodified	_DRKPAAALDL_					0	0	0			REV__ENST00000445551.1_1_1:47899535-47899697:-|nuORF	REV__ENST00000445551.1_1_1:47899535-47899697:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.3093872070312	2	535.303655	1068.59276	-0.46453	-0.00024867	2.1361	0.0011435	1.6716	0.0008948	535.3050142681042	111.57	1.1059	110.06	109.68	110.79	-1.5111					53	20	3	0	0	0	0.53807	1	10277	10277		49.536	0.094497	1	91956	+		5268	25888	4185	4194	6490	6490					0.061205303632732466
DRKSLDAKI	9	Unmodified	_DRKSLDAKI_					0	0	0			REV__tr|A0A553SNW6|A0A553SNW6_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_25145PE=3SV=1	REV__tr|A0A553SNW6|A0A553SNW6_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_25145PE=3SV=1	MSMS	OvCa9_classI_Rep4_	4	523.3042602539062	2	523.303655	1044.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.96	1	137.44	136.94	137.94	-1.5284								0	0	0	0.23988	1	13536	13536		19.997	0	1		+		5269	30465	4186	4195	6491	6491					0.07224530363282611
DRLAEEYL	8	Unmodified	_DRLAEEYL_					0	0	0			REV__ENSG00000120289|ENST00000378982|MAGEB4	REV__ENSG00000120289|ENST00000378982|MAGEB4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	504.7781677246094	2	504.753464	1007.49238	-0.31934	-0.00016119	3.7716	0.0019038	3.4523	0.0017426	504.75519813767943	57.29	1.3739	53.945	53.375	54.748	-3.3449					66	26	4	0	0	0	0.028476	1	3772	3772		65.803	16.362	1	295080	+		5270	18494	4187	4196	6492	6492					-0.011071266903741162
DRLFTFAHL	9	Unmodified	_DRLFTFAHL_					0	0	0			REV__ENST00000491944.1_1_3:38656036-38674834:-|nuORF	REV__ENST00000491944.1_1_3:38656036-38674834:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.2824096679688	2	560.300916	1118.58728	0.097534	5.4648E-05	4.4852	0.002513	4.5827	0.0025677	560.8040196287337	54.886	0.55679	54.886	54.378	54.935	0					18	12	2	0	0	0	0.027462	1	4406	4406		35.618	13.916	1	187200	+		5271	22392	4188	4197	6493	6493					0.032728515714552486
DRLIRRSK	8	Unmodified	_DRLIRRSK_					0	0	0		ENSG00000273604|ENST00000621654|EPOP	ENSG00000273604|ENST00000621654|EPOP	ENSG00000273604|ENST00000621654|EPOP	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.292724609375	2	522.325257	1042.63596	-0.54334	-0.0002838	2.7116	0.0014163	2.1683	0.0011325	522.3264709138393	63.714	1.6272	60.97	60.586	62.213	-2.7444					68	30	3	0	0	0	0.028476	1	4945	4945		10.866	0	1	152650			5272	9557	4189	4198	6494	6494					0.11634764931227437
DRLLTRDKKL	10	Unmodified	_DRLLTRDKKL_					0	0	0			REV__TLN2|p.A451Gfs*14|1|0.13|ENSG00000171914|chr15:62697744-62697745|-/A|frameshift_variant	REV__TLN2|p.A451Gfs*14|1|0.13|ENSG00000171914|chr15:62697744-62697745|-/A|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	629.8942260742188	2	629.385511	1256.75647	1.5666	0.00098598	4.4572	0.0028053	6.0238	0.0037913	629.3873621180543	113.98	1.0439	113.98	113.15	114.2	0					44	24	3	0	0	0	0.6349	1	12969	12969		37.812	4.9991	1	1628600	+		5273	21656	4190	4199	6495	6495					0.1383612813417585
DRLPRTRLGK	10	Unmodified	_DRLPRTRLGK_					0	0	0		KCNB1|p.C831Lfs*4|1|0.05|ENSG00000158445|chr20:49373069-49373070|-/G|frameshift_variant;ENSG00000158445|ENST00000371741|KCNB1;KCNB1|p.D382Efs*35|1|0.1|ENSG00000158445|chr20:49374414-49374415|-/GCTC|frameshift_variant;ENSG00000182674|ENST00000523207|KCNB2	KCNB1|p.C831Lfs*4|1|0.05|ENSG00000158445|chr20:49373069-49373070|-/G|frameshift_variant	KCNB1|p.C831Lfs*4|1|0.05|ENSG00000158445|chr20:49373069-49373070|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3689575195312	2	606.370195	1210.72584	-0.26856	-0.00016285	-0.5906	-0.00035812	-0.85916	-0.00052097	606.369699493104	145.24	3.8933	143.8	141.64	145.53	-1.4357					226	74	4	0	0	0	0.70152	1	14189	14189		30.318	6.795	1	336140			5274	5951	4191	4200	6496	6496					0.1289039453974965
DRLQALLF	8	Unmodified	_DRLQALLF_					0	0	0			REV__SH2D2A|p.A194Efs*84|1|0.27|ENSG00000027869|chr1:156809781-156809794|CAGGGAAAGTCCTG/-|frameshift_variant	REV__SH2D2A|p.A194Efs*84|1|0.27|ENSG00000027869|chr1:156809781-156809794|CAGGGAAAGTCCTG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.285888671875	2	488.284734	974.554916	-0.26209	-0.00012797	-0.89468	-0.00043686	-1.1568	-0.00056483	488.2841897132088	101.66	1.3309	99.393	99.066	100.4	-2.2665					71	25	4	0	0	0	0.62934	1	9173	9173		57.811	2.3071	1	466970	+		5275	16576	4192	4201	6497	6497					0.0666206416847217
DRLTKLVSL	9	Unmodified	_DRLTKLVSL_					0	0	0			REV__ENSG00000181541|ENST00000317605|MAB21L2	REV__ENSG00000181541|ENST00000317605|MAB21L2	MULTI-MSMS	OvCa9_classI_Rep2	2	522.8240356445312	2	522.824224	1043.63389	0.6555	0.00034271	-1.635	-0.00085481	-0.97949	-0.0005121	522.8233249021611	80.518	1.853	78.823	78.124	79.977	-1.6951					130	36	6	0	0	0	0.10502	1	6821	6821		95.815	10.654	1	1770100	+		5276	22238	4193	4202	6498	6498					0.1138229140274234
DRMAQEIKN	9	Unmodified	_DRMAQEIKN_					0	0	0			REV__ENST00000496728.1_1_7:100061616-100075106:-|nuORF	REV__ENST00000496728.1_1_7:100061616-100075106:-|nuORF	MSMS	OvCa99_classI_Rep5	1	552.7752685546875	2	552.776948	1103.53934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.3	1	37.3	36.8	37.8	0								0	0	0	0.16872	1	2034	2034		54.776	1.8396	1		+		5277	26766	4194	4203	6499	6499					-0.008285904109015974
DRMKRWLVA	9	Unmodified	_DRMKRWLVA_					0	0	0			REV__ENSG00000238205|ENST00000423387|MPC1L	REV__ENSG00000238205|ENST00000423387|MPC1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.8472290039062	2	587.829317	1173.64408	1.6763	0.0009854	-3.1013	-0.001823	-1.4249	-0.00083762	587.8273379593409	107.15	0.58752	107.15	106.93	107.52	0					23	13	2	0	0	0	0.027462	1	12130	12130		47.657	7.5992	1	161750	+		5278	23426	4195	4204	6500	6500					0.0642057585632756
DRNEPLWGL	9	Unmodified	_DRNEPLWGL_					0	0	0			REV__nc|ENSG00000106948|Q7Z591-8|AKNA	REV__nc|ENSG00000106948|Q7Z591-8|AKNA	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.2805786132812	2	550.28018	1098.54581	-0.26192	-0.00014413	-1.2987	-0.00071466	-1.5606	-0.00085879	550.279241634884	121.79	0.9691	120.44	120.11	121.08	-1.3479					49	18	4	0	0	0	0.5811	1	11482	11482		34.173	2.6427	1	81523	+		5279	17831	4196	4205	6501	6501					0.0004767081213685742
DRNRKQPG	8	Unmodified	_DRNRKQPG_					0	0	0		ENST00000343106.9_1_4:103748004-103748202:-|nuORF	ENST00000343106.9_1_4:103748004-103748202:-|nuORF	ENST00000343106.9_1_4:103748004-103748202:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	485.7629089355469	2	485.762489	969.510425	1.2017	0.00058373	-3.7186	-0.0018063	-2.5169	-0.0012226	485.76042345123534	144.12	0.54332	144.12	143.86	144.4	0					17	10	2	0	0	0	0.72922	1	16847	16847		37.028	1.4102	1	66984			5280	10593	4197	4206	6502	6502					0.024450530749959398
DRNVHEMA	8	Unmodified	_DRNVHEMA_					0	0	0			REV__tr|A0A7D6VNZ1|A0A7D6VNZ1_9CLOT3-oxoacidCoA-transferasesubunitBOS=ClostridiumintestinaleOX=36845GN=HZF06_20350PE=3SV=1	REV__tr|A0A7D6VNZ1|A0A7D6VNZ1_9CLOT3-oxoacidCoA-transferasesubunitBOS=ClostridiumintestinaleOX=36845GN=HZF06_20350PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.26654052734375	2	486.221808	970.429063	-1.2724	-0.00061868	1.4228	0.00069181	0.1504	7.313E-05	486.2249826727155	72.888	0.58056	69.492	69.107	69.688	-3.3961					13	11	2	0	0	0	0.028476	1	5614	5614		47.916	25.956	1	16186	+		5281	31215	4198	4207	6503	6503					-0.057333906792678135
DRPGERRRRRA	11	Unmodified	_DRPGERRRRRA_					0	0	0		ENSG00000172985|ENST00000309415|SH3RF3	ENSG00000172985|ENST00000309415|SH3RF3	ENSG00000172985|ENST00000309415|SH3RF3	MULTI-MSMS	OvCa9_classI_Rep3	3	475.6098937988281	3	475.606646	1423.79811	0.37352	0.00017765	2.8428	0.0013521	3.2163	0.0015297	475.6080683301692	81.355	3.0767	79.032	78.697	81.774	-2.3226					187	62	5	0	0	0	0.70587	2	4550	4550;4556		27.644	3.4121	1	5738700			5282	7337	4199	4208	6504;6505	6504					0.10316121666051004
DRPLRHHNSL	10	Unmodified	_DRPLRHHNSL_					0	0	0		nc|ENSG00000172508|A5YM72-4|CARNS1;ENSG00000172508|ENST00000687366|CARNS1;nc|ENSG00000172508|A5YM72-3|CARNS1;nc|ENSG00000172508|A5YM72|CARNS1	nc|ENSG00000172508|A5YM72-4|CARNS1	nc|ENSG00000172508|A5YM72-4|CARNS1	MULTI-MSMS	OvCa9_classI_Rep2	2	415.5592956542969	3	415.55841	1243.6534	0.31344	0.00013025	2.5615	0.0010644	2.8749	0.0011947	415.5593358589487	32.147	1.7881	29.437	29.085	30.873	-2.7097					72	35	4	0	0	0	0.73063	1	1020	1020		27.047	8.5163	1	86562			5283	7302	4200	4209	6506	6506					0.04132060466235998
DRPLRLDG	8	Unmodified	_DRPLRLDG_					0	0	0			REV__ENST00000420252.1_1_7:12511002-12511287:+|nuORF	REV__ENST00000420252.1_1_7:12511002-12511287:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.3092041015625	2	471.261791	940.509028	-0.3165	-0.00014915	-2.6992	-0.001272	-3.0156	-0.0014212	471.26103696391306	24.381	0.24821	24.381	24.237	24.486	0					7	4	2	0	0	0	0.028476	1	454	454		44.117	13.799	1	6284.1	+		5284	25590	4201	4210	6507	6507					0.036394189862335224
DRPRRIRME	9	Unmodified	_DRPRRIRME_					0	0	0		ENSG00000122728|ENST00000242310|TAF1L;TAF1L|p.I1514Qfs*6|1|0.03|ENSG00000122728|chr9:32631039-32631040|AT/-|frameshift_variant;TAF1L|p.D1494Ifs*14|1|0.17|ENSG00000122728|chr9:32631100-32631100|C/-|frameshift_variant;nc|ENSG00000147133|P21675-16|TAF1;nc|ENSG00000147133|P21675-17|TAF1;nc|ENSG00000147133|P21675|TAF1;ENSG00000147133|ENST00000423759|TAF1;nc|ENSG00000147133|P21675-1|TAF1;nc|ENSG00000147133|P21675-22|TAF1;nc|ENSG00000147133|P21675-18|TAF1;nc|ENSG00000147133|P21675-25|TAF1;nc|ENSG00000147133|P21675-13|TAF1;nc|ENSG00000147133|P21675-20|TAF1;nc|ENSG00000147133|P21675-19|TAF1;nc|ENSG00000147133|P21675-15|TAF1;nc|ENSG00000147133|P21675-21|TAF1;nc|ENSG00000147133|P21675-24|TAF1;nc|ENSG00000147133|P21675-23|TAF1;ENST00000478305.1_1_X:70607173-70609539:+|nuORF	ENSG00000122728|ENST00000242310|TAF1L	ENSG00000122728|ENST00000242310|TAF1L	MULTI-MSMS	OvCa9_classI_Rep2	2	614.837890625	2	614.838205	1227.66186	-2.1634	-0.0013301	2.3208	0.0014269	0.15737	9.6758E-05	614.8394745817393	38.144	1.0876	35.434	35.173	36.261	-2.7097					55	21	4	0	0	0	0.64127	1	1770	1770		19.997	4.355	1	117240			5285	3551	4202	4211	6508	6508					0.0571329111119212
DRPSKPERA	9	Unmodified	_DRPSKPERA_					0	0	0		nc|ENSG00000163704|Q5FWE3-3|PRRT3;ENSG00000163704|ENST00000412055|PRRT3	nc|ENSG00000163704|Q5FWE3-3|PRRT3	nc|ENSG00000163704|Q5FWE3-3|PRRT3	MULTI-MSMS	OvCa9_classI_Rep3	3	528.2803955078125	2	528.283254	1054.55196	-0.34488	-0.00018219	-3.5126	-0.0018557	-3.8575	-0.0020379	528.2812223205397	109.96	1.6185	108.81	108.24	109.86	-1.1444					90	30	4	0	0	0	0.28934	1	7934	7934		64.207	5.4253	1	376170			5286	6350	4203	4212	6509	6509					0.026861890436521207
DRPSYLELL	9	Unmodified	_DRPSYLELL_					0	0	0			REV__ENST00000578010.1_1_18:9550007-9550464:-|nuORF	REV__ENST00000578010.1_1_18:9550007-9550464:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	553.2985229492188	2	553.298039	1104.58152	0.53518	0.00029611	-0.5847	-0.00032351	-0.049517	-2.7398E-05	553.2975273463089	122.58	1.1353	122.36	122.12	123.25	-0.21803					44	22	3	0	0	0	0.60342	1	11892	11892		31.53	0	1	125250	+		5287	20403	4204	4213	6510	6510					0.03341708269135779
DRQHLLLESS	10	Unmodified	_DRQHLLLESS_					0	0	0			REV__ENSG00000196793|ENST00000374446|ZNF239	REV__ENSG00000196793|ENST00000374446|ZNF239	MULTI-MSMS	OvCa9_classI_Rep2	2	599.3113403320312	2	599.314751	1196.61495	-1.4774	-0.0008854	-3.3844	-0.0020283	-4.8617	-0.0029137	599.3125920502436	68.519	1.8365	65.899	65.229	67.066	-2.6203					106	36	5	0	0	0	0.28845	1	5425	5425		82.241	16.775	1	554290	+		5288	22865	4205	4214	6511	6511					0.024507100410573912
DRQQLPAF	8	Unmodified	_DRQQLPAF_					0	0	0		ENSG00000105523|ENST00000263266|FAM83E	ENSG00000105523|ENST00000263266|FAM83E	ENSG00000105523|ENST00000263266|FAM83E	MULTI-SECPEP	OvCa9_classI_Rep4_	4	488.2729797363281	2	487.756341	973.498129	-0.25978	-0.00012671	-1.9838	-0.00096762	-2.2436	-0.0010943	487.7530559470079	39.938	0.34751	36.984	36.715	37.062	-2.9541					9	6	2	0	0	0	0.028476	1	1672	1672		8.8223	0	1	8085.8			5289	2469	4206	4215	6512	6512					0.01032016611952713
DRQRKYRWKRD	11	Unmodified	_DRQRKYRWKRD_					0	0	0			REV__ENST00000381103.6_1_5:61643017-61643879:+|nuORF	REV__ENST00000381103.6_1_5:61643017-61643879:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3424682617188	3	536.293956	1605.86004	-0.56546	-0.00030325	-0.9823	-0.0005268	-1.5478	-0.00083006	536.2927574590099	39.506	0.25357	39.506	39.376	39.63	0					9	5	3	0	0	0	0.026534	1	2314	2314		6.001	0.30226	1	186890	+		5290	25190	4207	4216	6513	6513					0.08134428294533791
DRQTHLLD	8	Unmodified	_DRQTHLLD_					0	0	0			REV__ENSG00000142207|ENST00000382751|URB1	REV__ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.29913330078125	2	499.256705	996.498858	1.9628	0.00097994	4.2426	0.0021182	6.2054	0.0030981	499.2587447913896	100.05	0.79263	100.05	99.777	100.57	0					60	18	4	0	0	0	0.028476	1	11080	11080		42.396	0	1	11916000	+		5291	19776	4208	4217	6514	6514					0.0004681126099512767
DRQVVELV	8	Unmodified	_DRQVVELV_					0	0	0			REV__nc|ENSG00000115648|Q9BV36-5|MLPH	REV__nc|ENSG00000115648|Q9BV36-5|MLPH	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.301513671875	2	479.271824	956.529095	-0.11739	-5.6263E-05	0.26557	0.00012728	0.14818	7.1018E-05	479.2717471976879	58.757	0.40439	58.757	58.488	58.892	0					21	9	3	0	0	0	0.028476	1	5004	5004		71.296	2.5089	1	1367200	+		5292	18262	4209	4218	6515	6515					0.049091699261907706
DRRAAGVEPP	10	Unmodified	_DRRAAGVEPP_					0	0	0			REV__ENST00000432983.5_2_7:33169088-33185855:+|nuORF	REV__ENST00000432983.5_2_7:33169088-33185855:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	534.2839965820312	2	534.283254	1066.55196	-2.0798	-0.0011112	3.5267	0.0018842	1.4469	0.00077304	534.2851091761327	143.26	1.286	142.27	141.94	143.23	-0.9903					60	25	3	0	0	0	0.70152	1	11942	11942		30.318	2.2362	1	116190	+		5293	25739	4210	4219	6516	6516					0.021341890436588073
DRRAPTAADL	10	Unmodified	_DRRAPTAADL_					0	0	0			REV__ENST00000478827.1_1_13:41363773-41367312:+|nuORF	REV__ENST00000478827.1_1_13:41363773-41367312:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.7518310546875	2	543.288537	1084.56252	-0.80507	-0.00043739	-1.5203	-0.00082597	-2.3254	-0.0012634	543.2883831012148	26.25	0.44969	26.25	26.042	26.492	0					13	8	3	0	0	0	0.027145	1	659	659		18.262	3.3972	1	31039	+		5294	26424	4211	4220	6517	6517					0.023621716980642304
DRRDAFVK	8	Unmodified	_DRRDAFVK_					0	0	0		MYO7B|p.G920Afs*6|1|0.4|ENSG00000169994|chr2:127608822-127608822|G/-|frameshift_variant;nc|ENSG00000169994|Q6PIF6-2|MYO7B;MYO7B|p.A2010Pfs*5|1|0.38|ENSG00000169994|chr2:127636307-127636307|G/-|frameshift_variant;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B	MYO7B|p.G920Afs*6|1|0.4|ENSG00000169994|chr2:127608822-127608822|G/-|frameshift_variant	MYO7B|p.G920Afs*6|1|0.4|ENSG00000169994|chr2:127608822-127608822|G/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	503.7750244140625	2	503.775065	1005.53558	-0.45596	-0.0002297	0.060516	3.0486E-05	-0.39544	-0.00019921	503.7750531445752	38.859	0.53539	38.859	38.661	39.196	0					30	11	4	0	0	0	0.66945	1	2237	2237		49.536	0.094497	1	1187600			5295	7062	4212	4221	6518	6518					0.033031078775593414
DRRNLVPV	8	Unmodified	_DRRNLVPV_					0	0	0			REV__tr|A0A7D6VTY0|A0A7D6VTY0_9CLOTAminoacidadenylationdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18690PE=4SV=1	REV__tr|A0A7D6VTY0|A0A7D6VTY0_9CLOTAminoacidadenylationdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18690PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	485.270263671875	2	484.785433	967.556313	-1.1788	-0.00057149	0.49192	0.00023847	-0.68693	-0.00033301	484.78573066415436	53.119	1.3849	50.305	49.69	51.075	-2.8139					48	27	3	0	0	0	0.028476	1	3564	3564		50.025	0	1	186170	+		5296	31637	4213	4222	6519	6519					0.07123698257237265
DRRPCPML	8	Unmodified	_DRRPCPML_					0	0	0			REV__ENST00000460685.1_1_15:90455440-90455749:-|nuORF	REV__ENST00000460685.1_1_15:90455440-90455749:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	494.2492980957031	2	494.246772	986.478991	-0.051473	-2.544E-05	3.5228	0.0017411	3.4713	0.0017157	494.2484390468387	58.274	0.66887	58.274	58.027	58.696	0					33	15	3	0	0	0	0.59148	1	4942	4942		65.803	4.8312	1	2368600	+		5297	26089	4214	4223	6520	6520					-0.01478979274975245
DRSFVQKP	8	Unmodified	_DRSFVQKP_					0	0	0			REV__tr|A0A553SGX1|A0A553SGX1_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_11765PE=4SV=1	REV__tr|A0A553SGX1|A0A553SGX1_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_11765PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	488.76593017578125	2	488.764166	975.513779	-1.0571	-0.00051666	4.1313	0.0020192	3.0742	0.0015026	488.76599840059157	26.967	1.8466	26.967	26.642	28.489	0					77	36	3	0	0	0	0.71267	1	748	748		40.778	2.9666	1	202820	+		5298	29747	4215	4224	6521	6521					0.02504303129001073
DRSVFPDTY	9	Unmodified	_DRSVFPDTY_					0	0	0		ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7532958984375	2	550.256371	1098.49819	1.4624	0.0008047	-3.7793	-0.0020796	-2.3169	-0.0012749	550.2546666455368	129.95	0.42691	129.95	129.63	130.06	0					12	8	3	0	0	0	0.027462	1	15079	15079		44.117	11.304	1	50066			5299	5537	4216	4225	6522	6522					-0.0471202817871017
DRTNGRDLLF	10	Unmodified	_DRTNGRDLLF_					0	0	0			REV__BCLAF1|p.F509Wfs*32|1|0.12|ENSG00000029363|chr6:136275999-136276000|-/TATGTTCC|frameshift_variant	REV__BCLAF1|p.F509Wfs*32|1|0.12|ENSG00000029363|chr6:136275999-136276000|-/TATGTTCC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	603.8128662109375	2	603.814919	1205.61528	2.3788	0.0014364	-3.6752	-0.0022191	-1.2964	-0.00078277	603.8108203246145	108.32	1.384	108.32	107.94	109.33	0					107	31	6	0	0	0	0.35465	1	12242	12242		74.255	2.3776	1	1245000	+		5300	15697	4217	4226	6523	6523					0.020701297608866298
DRTVDRQDSD	10	Unmodified	_DRTVDRQDSD_					0	0	0		KIR3DL2|p.N384D|1|0.33|ENSG00000240403|chr19:54866414-54866414|A/G|missense_variant	KIR3DL2|p.N384D|1|0.33|ENSG00000240403|chr19:54866414-54866414|A/G|missense_variant	KIR3DL2|p.N384D|1|0.33|ENSG00000240403|chr19:54866414-54866414|A/G|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	603.7727661132812	2	603.770905	1205.52726	0.77681	0.00046902	-1.4378	-0.00086811	-0.66101	-0.0003991	603.7696100943778	160.6	1.4039	160.6	160.11	161.51	0					79	27	4	0	0	0	0.67987	1	18880	18880		32.751	3.5805	1	411500			5301	14524	4218	4227	6524	6524					-0.06728535620391085
DRVHKWSE	8	Unmodified	_DRVHKWSE_					0	0	0		ENSG00000153574|ENST00000283646|RPIA	ENSG00000153574|ENST00000283646|RPIA	ENSG00000153574|ENST00000283646|RPIA	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3317260742188	2	528.764697	1055.51484	-0.35494	-0.00018768	4.2144	0.0022284	3.8594	0.0020407	528.7673103235381	51.045	0.12823	51.045	50.949	51.078	0					4	2	2	0	0	0	0.028476	1	3917	3917		32.812	19.358	1	41373			5302	5686	4219	4228	6525	6525					-0.010694825020891585
DRVHKWSE	8	Unmodified	_DRVHKWSE_					0	0	0		ENSG00000153574|ENST00000283646|RPIA	ENSG00000153574|ENST00000283646|RPIA	ENSG00000153574|ENST00000283646|RPIA	MULTI-MATCH	OvCa9_classI_Rep2	2		2	528.764697	1055.51484	-1.6166	-0.00085478	10.429	0.0055142	8.812	0.0046595	528.7695423193643	54.087	0.29923	51.273	51.125	51.424	-2.8139	0.11409	0.0023749	NaN	32.812	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14335			5303	5686	4219	4228							-0.010694825020891585
DRVKKMLIM	9	Unmodified	_DRVKKMLIM_					0	0	0			REV__ENST00000355356.3_2_1:67450434-67450488:+|nuORF	REV__ENST00000355356.3_2_1:67450434-67450488:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3300170898438	2	567.330304	1132.64606	-3.474	-0.0019709	2.5615	0.0014532	-0.91249	-0.00051769	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.63422	1	12180	12180		27.882	1.1893	1	458690	+		5304	24745	4220	4229	6526	6526					0.08503868549951221
DRVLVRLTFV	10	Unmodified	_DRVLVRLTFV_					0	0	0			REV__ENSG00000197410|ENST00000357232|DCHS2	REV__ENSG00000197410|ENST00000357232|DCHS2	MULTI-MSMS	OvCa99_classI_Rep5	1	609.8734130859375	2	609.371872	1216.72919	0.56552	0.00034461	2.5174	0.0015341	3.083	0.0018787	609.3731861911076	164.45	1.5748	164.45	163.72	165.3	0					107	58	2	0	0	0	0.83261	1	19170	19170		14.865	0.72775	1	34749	+		5305	22920	4221	4230	6527	6527					0.1294964459377752
DRVNLRKHL	9	Unmodified	_DRVNLRKHL_					0	0	0		PKDREJ|p.H2048Tfs*3|1|0.05|ENSG00000130943|chr22:46257182-46257182|A/-|frameshift_variant;ENSG00000130943|ENST00000253255|PKDREJ	PKDREJ|p.H2048Tfs*3|1|0.05|ENSG00000130943|chr22:46257182-46257182|A/-|frameshift_variant	PKDREJ|p.H2048Tfs*3|1|0.05|ENSG00000130943|chr22:46257182-46257182|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8426513671875	2	575.843813	1149.67307	-4.018	-0.0023138	2.8816	0.0016594	-1.1364	-0.0006544	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.5811	1	12276	12276		34.173	3.8548	1	445630			5306	4028	4222	4231	6528	6528					0.10422436476983421
DRYDLFSL	8	Unmodified	_DRYDLFSL_					0	0	0			REV__ENST00000530013.5_1_11:33775932-33796043:-|nuORF	REV__ENST00000530013.5_1_11:33775932-33796043:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.3119506835938	2	514.756007	1027.49746	-1.6583	-0.00085364	-2.5663	-0.001321	-4.2246	-0.0021746	514.7547019745404	146.64	2.0646	145.2	144.91	146.98	-1.4357					51	40	2	0	0	0	0.028476	1	14388	14388		23.042	0	1	62309	+		5307	17983	4223	4232	6529	6529					-0.015188228277793314
DRYESDEWNFR	11	Unmodified	_DRYESDEWNFR_					0	0	0		tr|A0A553SKT5|A0A553SKT5_NIACIOctanoyltransferaseLipMOS=NialliacirculansOX=1397GN=lipMPE=3SV=1	tr|A0A553SKT5|A0A553SKT5_NIACIOctanoyltransferaseLipMOS=NialliacirculansOX=1397GN=lipMPE=3SV=1	tr|A0A553SKT5|A0A553SKT5_NIACIOctanoyltransferaseLipMOS=NialliacirculansOX=1397GN=lipMPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.830322265625	3	506.2199	1515.63787	-0.83605	-0.00042322	-2.56	-0.0012959	-3.3961	-0.0017192	506.2190049149871	66.564	0.29533	63.074	62.902	63.198	-3.4902					8	5	2	0	0	0	0.026455	1	4859	4859		10.562	1.7626	1	11870			5308	33652	4224	4233	6530	6530					-0.09932315632136124
DRYFYWLFTLA	11	Unmodified	_DRYFYWLFTLA_					0	0	0			REV__ENSG00000171044|ENST00000416569|XKR6	REV__ENSG00000171044|ENST00000416569|XKR6	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.94317626953125	3	498.918722	1493.73434	0.12046	6.0098E-05	3.1038	0.0015485	3.2242	0.0016086	498.91988467745045	80.383	0.34965	78.688	78.469	78.819	-1.6951					13	6	3	0	0	0	0.025767	1	6777	6777		45.022	17.378	1	29206	+		5309	21586	4225	4234	6531	6531					0.007219036657261313
DRYLELAR	8	Unmodified	_DRYLELAR_					0	0	0		nc|ENSG00000272395|K9M1U5-4|IFNL4	nc|ENSG00000272395|K9M1U5-4|IFNL4	nc|ENSG00000272395|K9M1U5-4|IFNL4	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.8026123046875	2	518.282723	1034.55089	0.34425	0.00017842	2.6802	0.0013891	3.0245	0.0015675	518.2844617145812	108.2	0.74207	107.97	107.63	108.37	-0.22498					19	14	2	0	0	0	0.028476	1	10159	10159		56.721	7.2795	1	16836			5310	15370	4226	4235	6532	6532					0.03499974674741679
DRYLELAR	8	Unmodified	_DRYLELAR_					0	0	0		nc|ENSG00000272395|K9M1U5-4|IFNL4	nc|ENSG00000272395|K9M1U5-4|IFNL4	nc|ENSG00000272395|K9M1U5-4|IFNL4	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	518.282723	1034.55089	-0.1597	-8.2769E-05	3.3635	0.0017433	3.2038	0.0016605	518.2847093786278	109.63	0.57951	107.91	107.58	108.15	-1.7256	-0.031421	0.00035456	NaN	39.253	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27196			5311	15370	4226	4235							0.03499974674741679
DSALIIDQ	8	Unmodified	_DSALIIDQ_					0	0	0			REV__nc|ENSG00000181038|Q86XA0-2|METTL23	REV__nc|ENSG00000181038|Q86XA0-2|METTL23	MULTI-MSMS	OvCa9_classI_Rep4_	4	437.7322692871094	2	437.729458	873.444362	-0.70705	-0.0003095	1.5176	0.00066431	0.81058	0.00035482	437.7300688971663	53.797	2.049	50.549	49.955	52.004	-3.2474					70	39	3	0	0	0	0.62934	1	3317	3317		57.811	7.7867	1	324660	+		5312	22215	4227	4236	6533	6533					0.0025779938957839477
DSANLKVVL	9	Unmodified	_DSANLKVVL_					0	0	0			REV__PCDHAC2|p.H770Pfs*34|1|0.02|ENSG00000243232|chr5:140969074-140969075|-/CCCTGCAGGAGAACAGT|frameshift_variant	REV__PCDHAC2|p.H770Pfs*34|1|0.02|ENSG00000243232|chr5:140969074-140969075|-/CCCTGCAGGAGAACAGT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.782958984375	2	479.782025	957.549496	-0.19778	-9.4889E-05	-0.099704	-4.7836E-05	-0.29748	-0.00014273	479.7819161566244	82.938	1.8719	80.255	79.93	81.802	-2.6829					101	38	4	0	0	0	0.28934	1	6895	6895		64.207	2.0999	1	1442300	+		5313	23196	4228	4237	6534	6534					0.06902340586009359
DSDQIRAKI	9	Unmodified	_DSDQIRAKI_					0	0	0			REV__nc|ENSG00000140199|Q9UHW9-6|SLC12A6	REV__nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.28857421875	2	523.285463	1044.55637	-0.58139	-0.00030423	3.8938	0.0020376	3.3125	0.0017334	523.2872096280854	96.142	1.4069	93.717	93.254	94.661	-2.4256					59	27	3	0	0	0	0.3076	1	8500	8500		62.107	5.3864	1	600950	+		5314	28892	4229	4238	6535	6535					0.035876534665476356
DSDSSNRFI	9	Unmodified	_DSDSSNRFI_					0	0	0			REV__ENSG00000188817|ENST00000343837|SNTN	REV__ENSG00000188817|ENST00000343837|SNTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.7415161132812	2	520.735803	1039.45705	-0.64244	-0.00033454	2.5766	0.0013417	1.9342	0.0010072	521.2393651200575	56.559	0.74353	56.559	56.261	57.004	0					28	17	2	0	0	0	0.027441	1	4685	4685		37.159	0	1	630370	+		5315	22741	4230	4239	6536	6536					-0.061097892181805946
DSEGDYSSNT	10	Unmodified	_DSEGDYSSNT_					0	0	0			REV__ENSG00000080200|ENST00000389622|CRYBG3	REV__ENSG00000080200|ENST00000389622|CRYBG3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.2960815429688	2	537.69654	1073.37853	-0.90918	-0.00048887	1.2036	0.00064719	0.29444	0.00015832	537.6970436307032	62.167	0.92717	58.709	58.429	59.356	-3.4577					40	18	3	0	0	0	0.026931	1	4316	4316		17.468	3.3309	1	200760	+		5316	17051	4231	4240	6537	6537					-0.1552268631392053
DSEGKLFFF	9	Unmodified	_DSEGKLFFF_					0	0	0			REV__ENST00000370562.1_1_20:60963217-60963421:+|nuORF	REV__ENST00000370562.1_1_20:60963217-60963421:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.7638549804688	2	545.266207	1088.51786	-0.93014	-0.00050717	-2.1558	-0.0011755	-3.0859	-0.0016827	545.2650676689917	37.219	0.23064	37.219	37.114	37.344	0					11	4	3	0	0	0	0.027462	1	2027	2027		27.882	0	1	69501	+		5317	24963	4232	4241	6538	6538					-0.02285652167961416
DSEHRRQGIA	10	Unmodified	_DSEHRRQGIA_					0	0	0		ENSG00000144035|ENST00000272425|NAT8	ENSG00000144035|ENST00000272425|NAT8	ENSG00000144035|ENST00000272425|NAT8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	585.744873046875	2	584.794518	1167.57448	-0.98524	-0.00057617	0.53428	0.00031245	-0.45096	-0.00026372	584.7949176516322	101.82	0.30975	99.55	99.455	99.765	-2.2665					7	5	2	0	0	0	0.026849	1	9166	9166		25.574	15.868	1	26728			5318	5123	4233	4242	6539	6539					-0.0026021155870239454
DSEKLLYVL	9	Unmodified	_DSEKLLYVL_					0	0	0		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3025512695312	2	540.30279	1078.59103	-0.67151	-0.00036282	0.66586	0.00035976	-0.0056497	-3.0526E-06	540.3029558613196	122.96	1.1336	122.74	122.46	123.6	-0.21803					60	22	4	0	0	0	0.1804	4	11920	11914;11920;11926;11933		79.713	19.594	1	191510			5319	3330	4234	4243	6540;6541;6542;6543	6541					0.05487476554662862
DSEKLLYVL	9	Unmodified	_DSEKLLYVL_					0	0	0		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.302978515625	2	540.30279	1078.59103	-1.3439	-0.00072612	1.3163	0.00071121	-0.027584	-1.4903E-05	540.3033043083178	124.06	1.3781	122.67	122.37	123.75	-1.3908					61	26	4	0	0	0	0.1944	2	11766	11766;11780		77.318	18.536	1	233120			5320	3330	4234	4243	6544;6545	6544					0.05487476554662862
DSELLIHVF	9	Unmodified	_DSELLIHVF_					0	0	0		ENSG00000163558|ENST00000295797|PRKCI;ENST00000392722.3_1_X:100793789-100794143:-|nuORF	ENSG00000163558|ENST00000295797|PRKCI;ENST00000392722.3_1_X:100793789-100794143:-|nuORF	ENSG00000163558|ENST00000295797|PRKCI	MULTI-MSMS	OvCa9_classI_Rep2	2	536.7872314453125	2	536.787307	1071.56006	-0.77134	-0.00041405	0.51353	0.00027566	-0.25781	-0.00013839	536.7874383566486	134.29	1.2718	134.07	133.71	134.98	-0.22696					57	25	4	0	0	0	0.064607	3	13290	13290;13297;13303		110.34	45.174	1	112800			5321	6326;11233	4235	4244	6546;6547;6548	6546					0.027143232404114315
DSELLIHVF	9	Unmodified	_DSELLIHVF_					0	0	0		ENSG00000163558|ENST00000295797|PRKCI;ENST00000392722.3_1_X:100793789-100794143:-|nuORF	ENSG00000163558|ENST00000295797|PRKCI;ENST00000392722.3_1_X:100793789-100794143:-|nuORF	ENSG00000163558|ENST00000295797|PRKCI	MULTI-MSMS	OvCa9_classI_Rep3	3	536.7868041992188	2	536.787307	1071.56006	0.37896	0.00020342	-0.43991	-0.00023614	-0.060951	-3.2718E-05	536.7869916701593	135	1.1817	133.88	133.55	134.74	-1.1226					55	23	4	0	0	0	0.098892	3	10905	10893;10899;10905		97.473	39.661	1	136940			5322	6326;11233	4235	4244	6549;6550;6551	6551					0.027143232404114315
DSFQQVILRRY	11	Unmodified	_DSFQQVILRRY_					0	0	0		ENST00000600692.5_1_19:21350445-21366834:+|nuORF;ENSG00000196705|ENST00000311048|ZNF431	ENST00000600692.5_1_19:21350445-21366834:+|nuORF	ENST00000600692.5_1_19:21350445-21366834:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	475.60968017578125	3	475.593009	1423.7572	0.43921	0.00020889	-1.492	-0.00070958	-1.0528	-0.00050069	475.59302725833334	81.355	0.5049	79.032	78.854	79.359	-2.3226					18	9	3	0	0	0	0.025248	1	4529	4529		42.338	7.1599	1	67832			5323	8644	4236	4245	6552	6552					0.06226922783230293
DSFTPGYLT	9	Unmodified	_DSFTPGYLT_					0	0	0		ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	ENSG00000196233|ENST00000421806|LCOR	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.3055725097656	2	500.73474	999.454927	-0.47795	-0.00023933	-3.8161	-0.0019108	-4.294	-0.0021502	500.73266293786116	98.507	1.2775	96.128	95.725	97.002	-2.3786					57	24	3	0	0	0	0.027462	1	8789	8789		29.15	7.1897	1	55026			5324	8580	4237	4246	6553	6553					-0.044822179560014774
DSGGTFVMPT	10	Unmodified	_DSGGTFVMPT_					0	0	0		CAMTA1|p.V1621Gfs*12|1|0.03|ENSG00000171735|chr1:7751370-7751371|-/GGGACCACGTGGTTATTCAGCTGGAGTGGGTT|frameshift_variant;nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1	CAMTA1|p.V1621Gfs*12|1|0.03|ENSG00000171735|chr1:7751370-7751371|-/GGGACCACGTGGTTATTCAGCTGGAGTGGGTT|frameshift_variant	CAMTA1|p.V1621Gfs*12|1|0.03|ENSG00000171735|chr1:7751370-7751371|-/GGGACCACGTGGTTATTCAGCTGGAGTGGGTT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.2533264160156	2	506.226225	1010.4379	-1.3494	-0.0006831	0.59322	0.0003003	-0.75617	-0.00038279	506.22600010553884	55.308	0.3577	52.014	51.803	52.16	-3.2944					13	6	3	0	0	0	0.026639	1	3473	3473		14.865	0	1	11355			5325	182	4238	4247	6554	6554					-0.06690461833443351
DSGKQLQL	8	Unmodified	_DSGKQLQL_					0	0	0			REV__ENSG00000143624|ENST00000318967|INTS3	REV__ENSG00000143624|ENST00000318967|INTS3	MULTI-SECPEP	OvCa99_classI_Rep5	1	444.7701110839844	2	444.742899	887.471246	0.054534	2.4254E-05	-0.035271	-1.5686E-05	0.019263	8.5673E-06	444.7430113412403	37.334	0.78365	37.334	36.977	37.761	0					30	16	3	0	0	0	0.027339	1	1997	1997		129.68	24.936	1	281990	+		5326	19858	4239	4248	6555	6555					0.023009080007682314
DSGKQLQL	8	Unmodified	_DSGKQLQL_					0	0	0			REV__ENSG00000143624|ENST00000318967|INTS3	REV__ENSG00000143624|ENST00000318967|INTS3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	444.742899	887.471246	1.8441	0.00082015	-1.7405	-0.00077409	0.10357	4.6061E-05	444.74196983093344	40.339	0.88854	37.629	37.402	38.29	-2.7097	0.14773	-0.00040825	NaN	129.68	29	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64324	+		5327	19858	4239	4248							0.023009080007682314
DSGPVPVQPKN	11	Unmodified	_DSGPVPVQPKN_					0	0	0			REV__AGAP1-PINX1|1|fusion	REV__AGAP1-PINX1|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	569.2998046875	2	569.29857	1136.58259	2.1378	0.0012171	0.1264	7.1962E-05	2.2642	0.001289	569.2986194127037	92.824	0.70796	92.824	92.555	93.263	0					40	16	3	0	0	0	0.25285	1	10038	10038		72.879	3.2516	1	3491200	+		5328	15579	4240	4249	6556	6556					0.01975922638052907
DSGQLTLSEV	10	Unmodified	_DSGQLTLSEV_					0	0	0			REV__tr|A0A553SIU2|A0A553SIU2_NIACILytRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_15520PE=3SV=1	REV__tr|A0A553SIU2|A0A553SIU2_NIACILytRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_15520PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.292236328125	2	524.761486	1047.50842	-0.84631	-0.00044411	1.9898	0.0010442	1.1435	0.00060004	524.7627520385747	116.62	1.4848	116.49	115.68	117.16	-0.12869					35	29	2	0	0	0	0.026464	1	11187	11187		60.118	3.3972	1	39867	+		5329	29929	4241	4250	6557	6557					-0.013434652441219441
DSGQQQYNLL	10	Unmodified	_DSGQQQYNLL_					0	0	0			REV__ENST00000435485.5_1_9:109350660-109366068:+|nuORF	REV__ENST00000435485.5_1_9:109350660-109366068:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.3089599609375	2	583.277835	1164.54112	0.59836	0.00034901	-0.94295	-0.00055	-0.34459	-0.00020099	583.2772742692342	66.942	0.27995	66.942	66.816	67.096	0					13	6	3	0	0	0	0.026659	1	6232	6232		37.812	12.686	1	514340	+		5330	25770	4242	4251	6558	6558					-0.03457258121261475
DSGSYRCEATN	11	Unmodified	_DSGSYRCEATN_					0	0	0		SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant;nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant	SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	601.3468017578125	2	601.740759	1201.46697	0.27479	0.00016535	-1.2508	-0.00075268	-0.97604	-0.00058732	601.74030895276	31.931	0.24829	31.931	31.807	32.055	0					7	4	2	0	0	0	0.026089	1	1351	1351		11.636	0	1	35502			5331	1794	4243	4252	6559	6559					-0.12570969275111565
DSGVHCLGSL	10	Unmodified	_DSGVHCLGSL_					0	0	0		ENST00000412686.5_1_7:99037063-99040649:+|nuORF;ENST00000441580.5_2_7:99037033-99042441:+|nuORF	ENST00000412686.5_1_7:99037063-99040649:+|nuORF	ENST00000412686.5_1_7:99037063-99040649:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.7809143066406	2	494.231842	986.44913	0.29184	0.00014423	-3.2862	-0.0016242	-2.9944	-0.0014799	494.2299721922002	47.828	0.81087	44.72	44.433	45.244	-3.1077					19	15	2	0	0	0	0.026849	1	2603	2603		25.574	4.6271	1	27850			5332	11550	4244	4253	6560	6560					-0.04463639739299197
DSHKKITA	8	Unmodified	_DSHKKITA_					0	0	0		ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-2|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL;nc|ENSG00000138078|Q4J6C6-3|PREPL	ENSG00000138078|ENST00000409411|PREPL	ENSG00000138078|ENST00000409411|PREPL	MULTI-SECPEP	OvCa9_classI_Rep2	2	450.2696838378906	2	450.250892	898.48723	1.5825	0.00071251	-0.068135	-3.0678E-05	1.5143	0.00068183	450.25094492142233	60.667	0.95191	57.897	57.501	58.453	-2.7702					27	17	2	0	0	0	0.028476	1	4533	4533		66.429	9.7082	1	67537			5333	4654	4245	4254	6561	6561					0.0339261423764583
DSHKKITA	8	Unmodified	_DSHKKITA_					0	0	0		ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-2|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL;nc|ENSG00000138078|Q4J6C6-3|PREPL	ENSG00000138078|ENST00000409411|PREPL	ENSG00000138078|ENST00000409411|PREPL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.27020263671875	2	450.250892	898.48723	0.8347	0.00037582	-1.3234	-0.00059585	-0.48867	-0.00022002	450.25017967946644	61.236	0.96881	57.805	57.395	58.364	-3.43					55	19	5	0	0	0	0.028476	1	4249	4249		47.657	6.8792	1	432320			5334	4654	4245	4254	6562	6562					0.0339261423764583
DSHSPLVLL	9	Unmodified	_DSHSPLVLL_					0	0	0		ENST00000426595.1_1_7:55973974-55979318:+|nuORF	ENST00000426595.1_1_7:55973974-55979318:+|nuORF	ENST00000426595.1_1_7:55973974-55979318:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	490.77484130859375	2	490.7742	979.533846	-1.1941	-0.00058601	0.83173	0.00040819	-0.36233	-0.00017782	490.77442955585013	91.231	1.3058	89.207	88.829	90.135	-2.0241					71	25	4	0	0	0	0.098892	1	5726	5726		97.473	8.8298	1	1112000			5335	11740	4246	4255	6563	6563					0.04326054068940266
DSHSRNALI	9	Unmodified	_DSHSRNALI_					0	0	0			REV__nc|ENSG00000138835|P49796|RGS3	REV__nc|ENSG00000138835|P49796|RGS3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.3254089355469	2	506.762155	1011.50976	-0.65553	-0.0003322	4.3678	0.0022134	3.7122	0.0018812	506.76415251020023	76.746	0.5638	73.808	73.459	74.023	-2.9389					25	11	3	0	0	0	0.027433	1	6131	6131		64.207	14.766	1	108010	+		5336	28888	4247	4256	6564	6564					0.004462136352913149
DSHTSLLKWI	10	Unmodified	_DSHTSLLKWI_					0	0	0			REV__ENSG00000162928|ENST00000295030|PEX13	REV__ENSG00000162928|ENST00000295030|PEX13	MULTI-MSMS	OvCa9_classI_Rep2	2	600.3238525390625	2	600.324588	1198.63462	-3.9025	-0.0023427	2.2864	0.0013726	-1.6161	-0.00097019	600.3257925158986	151.56	1.1868	151.34	150.94	152.13	-0.22696					55	23	3	0	0	0	0.79917	1	15427	15427		19.104	3.4617	1	109540	+		5337	20793	4248	4257	6565	6565					0.043250860517900946
DSIDLKKR	8	Unmodified	_DSIDLKKR_					0	0	0			REV__tr|A0A7D6VSN0|A0A7D6VSN0_9CLOTDUF169domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13535PE=4SV=1	REV__tr|A0A7D6VSN0|A0A7D6VSN0_9CLOTDUF169domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13535PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	487.7850036621094	2	487.785099	973.555644	-0.6392	-0.00031179	0.59555	0.0002905	-0.043649	-2.1291E-05	487.78523971631296	24.863	0.35444	24.863	24.687	25.042	0					14	6	4	0	0	0	0.68714	1	497	497		45.952	6.9305	1	100900	+		5338	31521	4249	4258	6566	6566					0.0678085881751258
DSIDLKKR	8	Unmodified	_DSIDLKKR_					0	0	0			REV__tr|A0A7D6VSN0|A0A7D6VSN0_9CLOTDUF169domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13535PE=4SV=1	REV__tr|A0A7D6VSN0|A0A7D6VSN0_9CLOTDUF169domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13535PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	487.785099	973.555644	-0.6392	-0.00031179	0.59555	0.0002905	-0.043649	-2.1291E-05	487.78523971631296	24.863	0.35444	24.863	24.687	25.042	0	0	0	NaN	45.952	14	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100900	+		5339	31521	4249	4258							0.0678085881751258
DSIFLKRL	8	Unmodified	_DSIFLKRL_					0	0	0			REV__ENSG00000204480|ENST00000376101|PRAMEF19	REV__ENSG00000204480|ENST00000376101|PRAMEF19	MULTI-MSMS	OvCa9_classI_Rep3	3	496.2996520996094	2	496.300384	990.586216	1.2461	0.00061845	-1.3256	-0.00065787	-0.079436	-3.9424E-05	496.29955522437075	123.03	1.3483	121.99	121.68	123.03	-1.0377					64	25	3	0	0	0	0.6962	1	9480	9480		44.117	8.4985	1	228980	+		5340	23159	4250	4259	6567	6567					0.09054637202575577
DSIGIYHLGK	10	Unmodified	_DSIGIYHLGK_					0	0	0			REV__tr|A0A553SPT2|A0A553SPT2_NIACIHistidinol-phosphataseOS=NialliacirculansOX=1397GN=CEQ21_08465PE=3SV=1	REV__tr|A0A553SPT2|A0A553SPT2_NIACIHistidinol-phosphataseOS=NialliacirculansOX=1397GN=CEQ21_08465PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.2709350585938	2	551.798206	1101.58186	-0.3784	-0.0002088	-3.9964	-0.0022052	-4.3748	-0.002414	551.7961219599804	56.374	0.52472	56.374	55.973	56.498	0					18	12	2	0	0	0	0.027021	1	4657	4657		21.96	7.095	1	320850	+		5341	30567	4251	4260	6568	6568					0.03513127989003806
DSIGIYHLGK	10	Unmodified	_DSIGIYHLGK_					0	0	0			REV__tr|A0A553SPT2|A0A553SPT2_NIACIHistidinol-phosphataseOS=NialliacirculansOX=1397GN=CEQ21_08465PE=3SV=1	REV__tr|A0A553SPT2|A0A553SPT2_NIACIHistidinol-phosphataseOS=NialliacirculansOX=1397GN=CEQ21_08465PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	551.798206	1101.58186	0.27199	0.00015008	-1.6161	-0.00089177	-1.3441	-0.00074169	551.7982002664869	58.942	0.76472	56.162	55.74	56.505	-2.7801	-0.091011	0.0024612	NaN	19.997	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47049	+		5342	30567	4251	4260							0.03513127989003806
DSIGIYHLGK	10	Unmodified	_DSIGIYHLGK_					0	0	0			REV__tr|A0A553SPT2|A0A553SPT2_NIACIHistidinol-phosphataseOS=NialliacirculansOX=1397GN=CEQ21_08465PE=3SV=1	REV__tr|A0A553SPT2|A0A553SPT2_NIACIHistidinol-phosphataseOS=NialliacirculansOX=1397GN=CEQ21_08465PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	551.798206	1101.58186	0.1987	0.00010964	-4.0133	-0.0022145	-3.8146	-0.0021049	551.7961491790978	59.615	0.78525	56.223	56.002	56.787	-3.392	-0.03	-0.00018433	NaN	19.997	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189690	+		5343	30567	4251	4260							0.03513127989003806
DSIHGESLLC	10	Unmodified	_DSIHGESLLC_					0	0	0			REV__ENST00000361740.8_1_22:43014893-43015193:-|nuORF	REV__ENST00000361740.8_1_22:43014893-43015193:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3148803710938	2	537.250231	1072.48591	-0.08884	-4.7729E-05	-1.1924	-0.00064061	-1.2812	-0.00068834	537.2494248761631	51.397	0.21289	51.397	51.248	51.461	0					6	4	2	0	0	0	0.027056	1	3958	3958		27.882	7.8855	1	83357	+		5344	24860	4252	4261	6569	6569					-0.047433879133905066
DSILCKNDLL	10	Unmodified	_DSILCKNDLL_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4|ABCA13	REV__nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MSMS	OvCa9_classI_Rep2	2	567.2979125976562	2	567.297181	1132.57981	0.96103	0.00054519	-0.47787	-0.00027109	0.48316	0.00027409	567.2967185608663	128.69	1.2374	128.46	128.13	129.37	-0.22696					75	24	5	0	0	0	0.66944	1	12617	12617		33.922	3.3528	1	313380	+		5345	22143	4253	4262	6570	6570					0.018823311888809258
DSILVLLSA	9	Unmodified	_DSILVLLSA_					0	0	0			REV__ENST00000541960.5_1_12:10366379-10366556:+|nuORF	REV__ENST00000541960.5_1_12:10366379-10366556:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.7776794433594	2	465.778951	929.543348	-3.3518	-0.0015612	0.48075	0.00022392	-2.8711	-0.0013373	465.7790622221326	151.79	0.91791	150.35	149.98	150.89	-1.435					37	19	3	0	0	0	0.62352	1	14996	14996		29.15	3.6994	1	51659	+		5346	27288	4254	4263	6571	6571					0.07575822354465345
DSILVLLSA	9	Unmodified	_DSILVLLSA_					0	0	0			REV__ENST00000541960.5_1_12:10366379-10366556:+|nuORF	REV__ENST00000541960.5_1_12:10366379-10366556:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	465.778951	929.543348	-4.7949	-0.0022334	2.18	0.0010154	-2.6149	-0.001218	465.77974768524734	151.31	0.80099	150.36	150.11	150.91	-0.95647	0.0019804	0.0011336	NaN	29.15	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30628	+		5347	27288	4254	4263							0.07575822354465345
DSIPREILV	9	Unmodified	_DSIPREILV_					0	0	0		ENSG00000100104|ENST00000215917|SRRD;SRRD|p.T124I|1|0.12|ENSG00000100104|chr22:26488149-26488149|C/T|missense_variant	ENSG00000100104|ENST00000215917|SRRD	ENSG00000100104|ENST00000215917|SRRD	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.3016967773438	2	521.300581	1040.58661	-0.71293	-0.00037165	2.0338	0.0010602	1.3209	0.00068858	521.3004317420421	101.71	1.3425	99.444	99.16	100.5	-2.2665					43	25	3	0	0	0	0.42676	1	9150	9150		49.442	1.482	1	117320			5348	2008	4255	4264	6572	6572					0.06794012131740601
DSIPREILV	9	Unmodified	_DSIPREILV_					0	0	0		ENSG00000100104|ENST00000215917|SRRD;SRRD|p.T124I|1|0.12|ENSG00000100104|chr22:26488149-26488149|C/T|missense_variant	ENSG00000100104|ENST00000215917|SRRD	ENSG00000100104|ENST00000215917|SRRD	MULTI-MATCH	OvCa9_classI_Rep3	3		2	521.300581	1040.58661	-0.89849	-0.00046838	0.9962	0.00051932	0.097704	5.0933E-05	521.3006924476671	101.06	0.67273	99.455	99.194	99.866	-1.6053	-0.014428	-0.00013009	NaN	49.442	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132410			5349	2008	4255	4264							0.06794012131740601
DSIVVLIPT	9	Unmodified	_DSIVVLIPT_					0	0	0			REV__tr|A0A7D6ZWF9|A0A7D6ZWF9_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07780PE=4SV=1	REV__tr|A0A7D6ZWF9|A0A7D6ZWF9_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07780PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	478.7849426269531	2	478.786776	955.558998	-3.0173	-0.0014446	0.10012	4.7936E-05	-2.9172	-0.0013967	478.78669233564773	146.16	1.5937	145.21	144.8	146.39	-0.95947					82	31	4	0	0	0	0.61208	1	12251	12251		30.504	2.2494	1	384210	+		5350	32283	4256	4265	6573	6573					0.0794410887151571
DSKDKKKG	8	Unmodified	_DSKDKKKG_					0	0	0			REV__ENSG00000151135|ENST00000280756|TMEM263	REV__ENSG00000151135|ENST00000280756|TMEM263	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.7449645996094	2	453.256174	904.497795	0.47358	0.00021465	-1.5078	-0.00068341	-1.0342	-0.00046876	453.25549752031617	58.252	0.6993	54.907	54.647	55.347	-3.3449					23	13	3	0	0	0	0.028476	1	3833	3833		51.335	8.861	1	41905	+		5351	20216	4257	4266	6574	6574					0.0417259689210141
DSKKKKRY	8	Unmodified	_DSKKKKRY_					0	0	0		DNAJB1-MED26|1|fusion;ENSG00000105085|ENST00000263390|MED26	DNAJB1-MED26|1|fusion	DNAJB1-MED26|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	526.8135375976562	2	526.81419	1051.61383	-1.1749	-0.00061897	0.55304	0.00029135	-0.62189	-0.00032762	526.8144970077967	27.366	1.1489	27.366	27.191	28.34	0					50	22	5	0	0	0	0.75723	1	821	821		23.042	0	1	2310700			5352	751	4258	4267	6575	6575					0.09008540462809833
DSKLLIESL	9	Unmodified	_DSKLLIESL_					0	0	0		ENSG00000121749|ENST00000485960|TBC1D15;nc|ENSG00000121749|Q8TC07-3|TBC1D15;nc|ENSG00000121749|Q8TC07|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.28729248046875	2	509.294965	1016.57538	-0.44855	-0.00022845	4.3238	0.0022021	3.8752	0.0019736	509.2969488064626	52.235	0.39495	52.235	51.995	52.39	0					23	8	4	0	0	0	0.027462	1	4099	4099		25.574	3.6142	1	254060			5353	3497	4259	4268	6576	6576					0.06775190037603807
DSKPSRLL	8	Unmodified	_DSKPSRLL_					0	0	0		ENST00000592378.5_1_17:74475239-74483895:-|nuORF	ENST00000592378.5_1_17:74475239-74483895:-|nuORF	ENST00000592378.5_1_17:74475239-74483895:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	459.23858642578125	2	458.266542	914.51853	-0.21931	-0.0001005	0.015353	7.0357E-06	-0.20396	-9.3468E-05	458.2663233307634	58.298	0.90173	54.926	54.569	55.471	-3.3725					29	17	3	0	0	0	0.028476	1	3868	3868		10.866	3.6722	1	64149			5354	14135	4260	4269	6577	6577					0.05785187271760606
DSKQNRDIL	9	Unmodified	_DSKQNRDIL_					0	0	0			REV__TMX2-CTNND1|2|fusion	REV__TMX2-CTNND1|2|fusion	MSMS	OvCa99_classI_Rep5	1	544.7920532226562	2	544.78837	1087.56219	NaN	NaN	NaN	NaN	NaN	NaN	NaN	153.76	1	153.76	153.26	154.26	0								0	0	0	0.17121	1	18014	18014		47.916	0.25827	1		+		5355	23031	4261	4270	6578	6578					0.021907519782416784
DSKRLRSII	9	Unmodified	_DSKRLRSII_					0	0	0			REV__tr|A0A7D6VS79|A0A7D6VS79_9CLOT3-dehydroquinatedehydrataseOS=ClostridiumintestinaleOX=36845GN=aroDPE=3SV=1	REV__tr|A0A7D6VS79|A0A7D6VS79_9CLOT3-dehydroquinatedehydrataseOS=ClostridiumintestinaleOX=36845GN=aroDPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8126831054688	2	544.332747	1086.65094	-1.3226	-0.00071991	-4.3865	-0.0023877	-5.709	-0.0031076	544.3305646437456	70.019	0.16258	70.019	69.883	70.046	0					5	3	2	0	0	0	0.027462	1	6677	6677		35.618	15.622	1	209180	+		5356	31476	4262	4271	6579	6579					0.11108212008548435
DSLGPMLE	8	Unmodified	_DSLGPMLE_					0	0	0			REV__ENST00000391411.9_1_17:21438021-21438132:-|nuORF	REV__ENST00000391411.9_1_17:21438021-21438132:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	430.2409362792969	2	431.204761	860.394969	0.28932	0.00012476	4.1041	0.0017697	4.3934	0.0018945	431.2064185695429	32.675	0.38947	32.675	32.503	32.892	0					11	7	2	0	0	0	0.028476	1	1460	1460		18.324	0	1	22503	+		5357	25239	4263	4272	6580	6580					-0.0408123189087064
DSLIEHLKVAI	11	Unmodified	_DSLIEHLKVAI_					0	0	0		ENST00000434597.2_1_9:37477166-37477928:+|nuORF	ENST00000434597.2_1_9:37477166-37477928:+|nuORF	ENST00000434597.2_1_9:37477166-37477928:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	413.241455078125	3	413.243206	1236.70779	0.19777	8.1725E-05	-4.4442	-0.0018365	-4.2465	-0.0017548	413.2408339832691	65.031	2.6713	61.546	60.383	63.054	-3.4854					141	54	4	0	0	0	0.68059	1	4667	4667		36.318	1.1394	1	658720			5358	11846	4264	4273	6581	6581					0.0989021477444112
DSLLTHIQNLK	11	Unmodified	_DSLLTHIQNLK_					0	0	0		nc|ENSG00000064419|Q9Y5L0-5|TNPO3;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3;nc|ENSG00000064419|Q9Y5L0-1|TNPO3;TNPO3|p.A113Qfs*25|1|0.06|ENSG00000064419|chr7:129017041-129017041|C/-|frameshift_variant	nc|ENSG00000064419|Q9Y5L0-5|TNPO3	nc|ENSG00000064419|Q9Y5L0-5|TNPO3	MULTI-MSMS	OvCa9_classI_Rep2	2	427.9095153808594	3	427.910227	1280.70885	-2.4401	-0.0010441	0.25392	0.00010866	-2.1862	-0.00093548	427.91030319374806	37.38	1.1325	34.67	34.337	35.469	-2.7097					47	22	3	0	0	0	0.70032	1	1675	1675		29.551	0	1	126010			5359	1300	4265	4274	6582	6582					0.0797242914331946
DSLNLPGTID	10	Unmodified	_DSLNLPGTID_					0	0	0			REV__ENST00000371561.7_3_9:140062204-140062291:+|nuORF	REV__ENST00000371561.7_3_9:140062204-140062291:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.2406005859375	2	522.764029	1043.5135	-0.76935	-0.00040219	-3.2156	-0.001681	-3.985	-0.0020832	522.7611528294055	66.663	0.39323	63.173	62.902	63.295	-3.4902					10	7	2	0	0	0	0.026681	1	4829	4829		22.58	10.373	1	12030	+		5360	24983	4266	4275	6583	6583					-0.0065116138150642655
DSLRWTPIL	9	Unmodified	_DSLRWTPIL_					0	0	0		nc|ENSG00000156650|Q8WYB5-3|KAT6B;KAT6B|p.F1803Rfs*22|1|0.06|ENSG00000156650|chr10:75030230-75030231|-/CG|frameshift_variant;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B;ENST00000490365.1_1_10:76744849-76785012:+|nuORF	nc|ENSG00000156650|Q8WYB5-3|KAT6B	nc|ENSG00000156650|Q8WYB5-3|KAT6B	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.8081665039062	2	550.808574	1099.60259	-1.5162	-0.00083516	-2.3559	-0.0012977	-3.8722	-0.0021328	550.8071596293769	50.301	1.6918	47.159	46.663	48.355	-3.1416					106	32	4	0	0	0	0.24951	1	2882	2882		68.787	8.856	1	991970			5361	5851	4267	4276	6584	6584					0.05677718368656315
DSLVELGALK	10	Unmodified	_DSLVELGALK_					0	0	0			REV__nc|ENSG00000196116|Q8NHU6-2|TDRD7	REV__nc|ENSG00000196116|Q8NHU6-2|TDRD7	MULTI-MSMS	OvCa9_classI_Rep2	2	522.802734375	2	522.800414	1043.58628	-0.60564	-0.00031663	1.5182	0.00079371	0.91254	0.00047707	522.8010421976496	33.203	1.3901	30.493	30.272	31.662	-2.7097					70	27	4	0	0	0	0.69073	1	1225	1225		31.53	4.8369	1	560900	+		5362	22784	4268	4277	6585	6585					0.06622592411895312
DSLVGLNVIL	10	Unmodified	_DSLVGLNVIL_					0	0	0		tr|A0A7D6VRA7|A0A7D6VRA7_9CLOTAlpha-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04820PE=3SV=1	tr|A0A7D6VRA7|A0A7D6VRA7_9CLOTAlpha-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04820PE=3SV=1	tr|A0A7D6VRA7|A0A7D6VRA7_9CLOTAlpha-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04820PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.2671508789062	2	521.810782	1041.60701	-2.8643	-0.0014946	1.3712	0.00071553	-1.4931	-0.00077911	521.811406389228	88.156	1.448	85.553	85.228	86.676	-2.6027					51	28	2	0	0	0	0.02658	1	7623	7623		54.776	3.5836	1	259250			5363	34908	4269	4278	6586	6586					0.08787182791570558
DSLVGLNVIL	10	Unmodified	_DSLVGLNVIL_					0	0	0		tr|A0A7D6VRA7|A0A7D6VRA7_9CLOTAlpha-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04820PE=3SV=1	tr|A0A7D6VRA7|A0A7D6VRA7_9CLOTAlpha-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04820PE=3SV=1	tr|A0A7D6VRA7|A0A7D6VRA7_9CLOTAlpha-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04820PE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	521.810782	1041.60701	1.4864	0.0007756	-0.67466	-0.00035205	0.8117	0.00042355	521.8101115437258	85.232	0.29341	85.232	85.087	85.38	0	-0.25976	-0.0001161	NaN	54.776	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	729150			5364	34908	4269	4278							0.08787182791570558
DSLVGLNVIL	10	Unmodified	_DSLVGLNVIL_					0	0	0		tr|A0A7D6VRA7|A0A7D6VRA7_9CLOTAlpha-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04820PE=3SV=1	tr|A0A7D6VRA7|A0A7D6VRA7_9CLOTAlpha-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04820PE=3SV=1	tr|A0A7D6VRA7|A0A7D6VRA7_9CLOTAlpha-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04820PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.810782	1041.60701	1.0346	0.00053987	-2.1496	-0.0011217	-1.115	-0.00058181	521.8094490398064	87.057	1.203	85.626	85.228	86.431	-1.4311	0.13446	-0.0016554	NaN	54.776	54	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130830			5365	34908	4269	4278							0.08787182791570558
DSLVGLNVIL	10	Unmodified	_DSLVGLNVIL_					0	0	0		tr|A0A7D6VRA7|A0A7D6VRA7_9CLOTAlpha-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04820PE=3SV=1	tr|A0A7D6VRA7|A0A7D6VRA7_9CLOTAlpha-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04820PE=3SV=1	tr|A0A7D6VRA7|A0A7D6VRA7_9CLOTAlpha-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04820PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	521.810782	1041.60701	-0.67434	-0.00035188	0.12135	6.3324E-05	-0.55298	-0.00028855	521.8107190790539	87.732	1.2202	85.556	85.293	86.513	-2.1768	0.063843	0.00071464	NaN	54.776	44	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	281660			5366	34908	4269	4278							0.08787182791570558
DSLVRFTTG	9	Unmodified	_DSLVRFTTG_					0	0	0			REV__ENSG00000161996|ENST00000293879|WDR90	REV__ENSG00000161996|ENST00000293879|WDR90	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.2625732421875	2	498.261456	994.50836	-0.23351	-0.00011635	-0.5577	-0.00027788	-0.79121	-0.00039423	498.2610994272217	78.826	1.4654	76.075	75.714	77.179	-2.7514					62	30	3	0	0	0	0.27001	1	6375	6375		66.429	5.4573	1	917230	+		5367	20716	4270	4279	6587	6587					0.010885795465242154
DSMRADFSL	9	Unmodified	_DSMRADFSL_					0	0	0		nc|ENSG00000119397|Q7Z7A1-2|CNTRL;nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;nc|ENSG00000119397|Q7Z7A1-4|CNTRL;nc|ENSG00000119397|Q7Z7A1-3|CNTRL	nc|ENSG00000119397|Q7Z7A1-2|CNTRL	nc|ENSG00000119397|Q7Z7A1-2|CNTRL	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.8328247070312	2	521.237124	1040.45969	-0.54396	-0.00028353	1.3242	0.00069024	0.78028	0.00040671	521.7393604545977	71.03	0.1956	71.03	70.954	71.15	0					6	4	2	0	0	0	0.027453	1	6854	6854		64.207	25.401	1	147590			5368	3358	4271	4280	6588	6588					-0.058916570848850824
DSMRADFSL	9	Unmodified	_DSMRADFSL_					0	0	0		nc|ENSG00000119397|Q7Z7A1-2|CNTRL;nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;nc|ENSG00000119397|Q7Z7A1-4|CNTRL;nc|ENSG00000119397|Q7Z7A1-3|CNTRL	nc|ENSG00000119397|Q7Z7A1-2|CNTRL	nc|ENSG00000119397|Q7Z7A1-2|CNTRL	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	521.237124	1040.45969	-0.72106	-0.00037584	6.4521	0.0033631	5.7311	0.0029872	521.2405287418889	74.411	0.38556	71.181	71	71.385	-3.2308	0.075553	0.0034901	NaN	64.207	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26709			5369	3358	4271	4280							-0.058916570848850824
DSNRTKNI	8	Unmodified	_DSNRTKNI_					0	0	0		tr|A0A553SSQ8|A0A553SSQ8_NIACIM20/M25/M40familymetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_03525PE=4SV=1	tr|A0A553SSQ8|A0A553SSQ8_NIACIM20/M25/M40familymetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_03525PE=4SV=1	tr|A0A553SSQ8|A0A553SSQ8_NIACIM20/M25/M40familymetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_03525PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.251708984375	2	474.24888	946.483208	0.12005	5.6934E-05	3.8128	0.0018082	3.9329	0.0018652	474.25037260548976	63.105	1.3961	59.63	59.143	60.539	-3.475					71	28	4	0	0	0	0.56195	1	4433	4433		71.296	5.4925	1	256040			5370	34404	4272	4281	6589	6589					0.007825247439541272
DSNRTKNI	8	Unmodified	_DSNRTKNI_					0	0	0		tr|A0A553SSQ8|A0A553SSQ8_NIACIM20/M25/M40familymetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_03525PE=4SV=1	tr|A0A553SSQ8|A0A553SSQ8_NIACIM20/M25/M40familymetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_03525PE=4SV=1	tr|A0A553SSQ8|A0A553SSQ8_NIACIM20/M25/M40familymetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_03525PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	474.24888	946.483208	-1.9118	-0.00090665	6.3062	0.0029907	4.3945	0.0020841	474.251484538527	62.52	1.3314	59.763	59.189	60.52	-2.7574	0.066397	0.0014492	NaN	71.296	52	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41299			5371	34404	4272	4281							0.007825247439541272
DSNTVIHSL	9	Unmodified	_DSNTVIHSL_					0	0	0		tr|A0A553SPR3|A0A553SPR3_NIACIHAMPdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26870PE=3SV=1	tr|A0A553SPR3|A0A553SPR3_NIACIHAMPdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26870PE=3SV=1	tr|A0A553SPR3|A0A553SPR3_NIACIHAMPdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26870PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.8201599121094	2	493.251089	984.487624	-0.26729	-0.00013184	-0.69857	-0.00034457	-0.96586	-0.00047641	493.25081544149305	63.319	0.76813	59.844	59.674	60.442	-3.475					24	15	2	0	0	0	0.027462	1	4436	4436		39.253	5.7599	1	148470			5372	34072	4273	4282	6590	6590					-0.005240108331236115
DSNWWVLKS	9	Unmodified	_DSNWWVLKS_					0	0	0		ENSG00000122728|ENST00000242310|TAF1L;TAF1L|p.I1514Qfs*6|1|0.03|ENSG00000122728|chr9:32631039-32631040|AT/-|frameshift_variant;TAF1L|p.D1494Ifs*14|1|0.17|ENSG00000122728|chr9:32631100-32631100|C/-|frameshift_variant;nc|ENSG00000147133|P21675-16|TAF1;nc|ENSG00000147133|P21675-17|TAF1;nc|ENSG00000147133|P21675|TAF1;ENSG00000147133|ENST00000423759|TAF1;nc|ENSG00000147133|P21675-1|TAF1;nc|ENSG00000147133|P21675-22|TAF1;nc|ENSG00000147133|P21675-18|TAF1;nc|ENSG00000147133|P21675-25|TAF1;nc|ENSG00000147133|P21675-13|TAF1;nc|ENSG00000147133|P21675-20|TAF1;nc|ENSG00000147133|P21675-19|TAF1;nc|ENSG00000147133|P21675-15|TAF1;nc|ENSG00000147133|P21675-21|TAF1;nc|ENSG00000147133|P21675-24|TAF1;nc|ENSG00000147133|P21675-23|TAF1;ENST00000478305.1_1_X:70607173-70609539:+|nuORF	ENSG00000122728|ENST00000242310|TAF1L	ENSG00000122728|ENST00000242310|TAF1L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	568.3124389648438	2	567.782556	1133.55056	0.77966	0.00044268	2.4126	0.0013698	3.1923	0.0018125	567.7842387203954	89.509	1.1363	86.934	86.062	87.198	-2.575					33	22	2	0	0	0	0.027462	1	7612	7612		25.574	0	1	53914			5373	3551	4274	4283	6591	6591					-0.010874450451183293
DSPELNKVK	9	Unmodified	_DSPELNKVK_					0	0	0		nc|ENSG00000182473|Q9UPT5-2|EXOC7;nc|ENSG00000182473|Q9UPT5-5|EXOC7;ENSG00000182473|ENST00000589210|EXOC7;nc|ENSG00000182473|Q9UPT5-6|EXOC7;nc|ENSG00000182473|Q9UPT5|EXOC7;nc|ENSG00000182473|Q9UPT5-4|EXOC7;ENST00000405068.3_1_17:74090453-74099797:-|nuORF	nc|ENSG00000182473|Q9UPT5-2|EXOC7	nc|ENSG00000182473|Q9UPT5-2|EXOC7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.3217163085938	2	515.282389	1028.55022	-0.41847	-0.00021563	-0.87224	-0.00044945	-1.2907	-0.00066508	515.2815321089889	123.67	0.64127	122.29	121.99	122.63	-1.3827					14	12	2	0	0	0	0.027453	1	11691	11691		37.812	7.3079	1	24028			5374	8002	4275	4284	6592	6592					0.03709135235044414
DSPGFQNPR	9	Unmodified	_DSPGFQNPR_					0	0	0		nc|ENSG00000133454|Q8IUG5-2|MYO18B;ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B;MYO18B|p.I2077Mfs*53|1|0.11|ENSG00000133454|chr22:25992436-25992436|T/-|frameshift_variant	nc|ENSG00000133454|Q8IUG5-2|MYO18B	nc|ENSG00000133454|Q8IUG5-2|MYO18B	MULTI-MSMS	OvCa9_classI_Rep3	3	509.2398681640625	2	509.241055	1016.46756	1.5833	0.00080629	-2.2382	-0.0011398	-0.65491	-0.00033351	509.2399801613584	60.9	1.9539	57.832	56.783	58.737	-3.0685					78	52	2	0	0	0	0.6653	1	2069	2069		24.203	1.1603	1	24864			5375	4222	4276	4285	6593	6593					-0.04001761773099588
DSPKNLVTD	9	Unmodified	_DSPKNLVTD_					0	0	0		ENSG00000120332|ENST00000239462|TNN	ENSG00000120332|ENST00000239462|TNN	ENSG00000120332|ENST00000239462|TNN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.7673034667969	2	494.750921	987.48729	1.081	0.00053484	0.0044767	2.2149E-06	1.0855	0.00053705	494.7508056841733	68.172	0.24182	64.682	64.478	64.72	-3.4902					6	4	2	0	0	0	0.027304	1	5029	5029		77.318	10.356	1	60199			5376	3428	4277	4286	6594	6594					-0.006954305530030069
DSPKTLVLD	9	Unmodified	_DSPKTLVLD_					0	0	0		ENSG00000171467|ENST00000361428|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3246154785156	2	494.27149	986.528426	-0.17471	-8.6356E-05	2.1156	0.0010457	1.9409	0.00095934	494.2727749049506	80.226	1.5287	77.886	77.66	79.189	-2.3399					52	29	2	0	0	0	0.027185	1	4376	4376		82.241	10.945	1	219640			5377	7198	4278	4287	6595	6595					0.034623304864680904
DSQERQLLH	9	Unmodified	_DSQERQLLH_					0	0	0			REV__nc|ENSG00000125447|Q9NZ52-3|GGA3	REV__nc|ENSG00000125447|Q9NZ52-3|GGA3	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.8394775390625	2	563.285994	1124.55744	-0.0035734	-2.0128E-06	-3.4508	-0.0019438	-3.4544	-0.0019458	563.2838871340664	52.221	0.44041	52.221	52.038	52.478	0					14	9	2	0	0	0	0.027462	1	4056	4056		21.96	1.013	1	144080	+		5378	18724	4279	4288	6596	6596					0.00013867835468772682
DSQERQLLH	9	Unmodified	_DSQERQLLH_					0	0	0			REV__nc|ENSG00000125447|Q9NZ52-3|GGA3	REV__nc|ENSG00000125447|Q9NZ52-3|GGA3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	563.285994	1124.55744	0.3895	0.0002194	-4.3572	-0.0024543	-3.9677	-0.0022349	563.2818919022837	55.191	0.15434	51.928	51.834	51.989	-3.2629	-0.14643	-0.00039583	NaN	42.396	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5177.8	+		5379	18724	4279	4288							0.00013867835468772682
DSQGKFIL	8	Unmodified	_DSQGKFIL_					0	0	0		tr|A0A7D6ZY74|A0A7D6ZY74_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15340PE=4SV=1	tr|A0A7D6ZY74|A0A7D6ZY74_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15340PE=4SV=1	tr|A0A7D6ZY74|A0A7D6ZY74_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15340PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	453.2689514160156	2	454.247818	906.481082	-0.2446	-0.00011111	0.73563	0.00033416	0.49102	0.00022305	454.24813664007024	70.787	0.81822	67.331	67.106	67.924	-3.4563					22	16	2	0	0	0	0.028476	1	5379	5379		28.254	0	1	42587			5380	35911	4280	4289	6597	6597					0.024100960061332444
DSQKVSVYL	9	Unmodified	_DSQKVSVYL_					0	0	0		ENST00000517639.5_1_8:102928009-103032516:-|nuORF	ENST00000517639.5_1_8:102928009-103032516:-|nuORF	ENST00000517639.5_1_8:102928009-103032516:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.3318481445312	2	519.776939	1037.53933	-0.61831	-0.00032138	1.6991	0.00088315	1.0808	0.00056177	519.7776020461297	77.478	0.60091	75.126	74.995	75.596	-2.3527					19	11	2	0	0	0	0.027433	1	4041	4041		54.776	4.7518	1	206560			5381	13060	4281	4290	6598	6598					0.022057328607616
DSRIKVSHI	9	Unmodified	_DSRIKVSHI_					0	0	0		nc|ENSG00000134571|Q14896-2|MYBPC3;ENSG00000134571|ENST00000545968|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.7855224609375	2	527.803823	1053.59309	-2.6832	-0.0014162	1.9198	0.0010133	-0.76343	-0.00040294	527.8046578827556	49.83	0.72958	46.689	46.455	47.184	-3.1416					26	13	2	0	0	0	0.027462	1	2866	2866		34.173	7.1252	1	187060			5382	4309	4282	4291	6599	6599					0.06843950083134587
DSRLLELHI	9	Unmodified	_DSRLLELHI_					0	0	0		ENSG00000126890|ENST00000369585|CTAG2;nc|ENSG00000126890|O75638|CTAG2	ENSG00000126890|ENST00000369585|CTAG2	ENSG00000126890|ENST00000369585|CTAG2	MULTI-MSMS	OvCa99_classI_Rep5	1	548.3150634765625	2	548.31148	1094.60841	2.6742	0.0014663	-0.67112	-0.00036798	2.0031	0.0010983	548.3110706164282	90.123	1.0937	90.123	89.763	90.857	0					72	26	5	0	0	0	0.35444	1	9634	9634		56.721	1.9447	1	16494000			5383	3810	4283	4292	6600	6600					0.06488816880346349
DSRLPQPAE	9	Unmodified	_DSRLPQPAE_					0	0	0		nc|ENSG00000290292|Q8IX15|HOMEZ;nc|ENSG00000290292|Q8IX15-3|HOMEZ	nc|ENSG00000290292|Q8IX15|HOMEZ	nc|ENSG00000290292|Q8IX15|HOMEZ	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.7944030761719	2	506.756538	1011.49852	-1.0983	-0.00055657	1.4819	0.00075096	0.3836	0.00019439	506.7568203222127	53.228	0.70551	50.02	49.698	50.404	-3.208					20	13	2	0	0	0	0.02744	1	3218	3218		62.107	8.756	1	69146			5384	15392	4284	4293	6601	6601					-0.006766084588548438
DSRPSSPALYF	11	Unmodified	_DSRPSSPALYF_					0	0	0		ENST00000496728.1_1_7:100061616-100075106:-|nuORF;nc|ENSG00000166925|Q9Y3Q8-2|TSC22D4;ENST00000493217.1_1_7:100071895-100075661:-|nuORF;ENSG00000166925|ENST00000300181|TSC22D4	ENST00000496728.1_1_7:100061616-100075106:-|nuORF	ENST00000496728.1_1_7:100061616-100075106:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	413.7621765136719	3	413.87166	1238.59315	-0.067857	-2.8084E-05	-2.4167	-0.0010002	-2.4846	-0.0010283	413.8702357639068	74.309	0.47899	71.078	70.906	71.385	-3.2308					12	9	2	0	0	0	0.025508	1	5824	5824		27.644	11.114	1	16723			5385	6736	4285	4294	6602	6602					-0.016600947075403383
DSRRKSEFL	9	Unmodified	_DSRRKSEFL_					0	0	0		ENSG00000113248|ENST00000231173|PCDHB15	ENSG00000113248|ENST00000231173|PCDHB15	ENSG00000113248|ENST00000231173|PCDHB15	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.7764892578125	2	569.304187	1136.59382	2.1874	0.0012453	-3.9207	-0.0022321	-1.7333	-0.00098679	569.3016989440965	116.39	0.58968	116.39	116.09	116.68	0					19	12	2	0	0	0	0.027462	1	13347	13347		42.396	5.237	1	160620			5386	2955	4286	4295	6603	6603					0.03098744732187697
DSSGQWII	8	Unmodified	_DSSGQWII_					0	0	0		nc|ENSG00000137691|Q9BRQ4-2|CFAP300;ENST00000530659.1_1_11:101918495-101953927:+|nuORF;ENSG00000137691|ENST00000434758|CFAP300;nc|ENSG00000137691|Q9BRQ4-3|CFAP300	nc|ENSG00000137691|Q9BRQ4-2|CFAP300	nc|ENSG00000137691|Q9BRQ4-2|CFAP300	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.2498474121094	2	453.2218	904.429047	0.20094	9.1072E-05	4.3113	0.001954	4.5122	0.002045	453.2233495675264	52.424	0.6591	49.216	48.943	49.602	-3.208					26	12	3	0	0	0	0.028476	1	3164	3164		63.306	8.5416	1	66730			5387	4607	4287	4296	6604	6604					-0.026990674076273535
DSSGQWII	8	Unmodified	_DSSGQWII_					0	0	0		nc|ENSG00000137691|Q9BRQ4-2|CFAP300;ENST00000530659.1_1_11:101918495-101953927:+|nuORF;ENSG00000137691|ENST00000434758|CFAP300;nc|ENSG00000137691|Q9BRQ4-3|CFAP300	nc|ENSG00000137691|Q9BRQ4-2|CFAP300	nc|ENSG00000137691|Q9BRQ4-2|CFAP300	MULTI-MATCH	OvCa9_classI_Rep2	2		2	453.2218	904.429047	0.6202	0.00028109	3.4924	0.0015828	4.1126	0.0018639	453.22294833285275	52.17	0.49555	49.357	49.146	49.642	-2.8129	0.070769	-0.00050058	NaN	63.306	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12194			5388	4607	4287	4296							-0.026990674076273535
DSSKPRILLMG	11	Unmodified	_DSSKPRILLMG_					0	0	0		ENSG00000116954|ENST00000373001|RRAGC	ENSG00000116954|ENST00000373001|RRAGC	ENSG00000116954|ENST00000373001|RRAGC	MULTI-MSMS	OvCa9_classI_Rep2	2	608.8364868164062	2	608.839548	1215.66454	-3.9036	-0.0023766	-0.38806	-0.00023627	-4.2916	-0.0026129	608.8391511731406	151.54	1.2369	151.31	150.94	152.18	-0.22697					74	24	4	0	0	0	0.72459	1	15418	15418		20.947	0	1	158260			5389	3220	4288	4297	6605	6605					0.06533701725470564
DSSQIVGRLLF	11	Unmodified	_DSSQIVGRLLF_					0	0	0			REV__ENST00000472641.1_1_6:32116492-32119637:-|nuORF	REV__ENST00000472641.1_1_6:32116492-32119637:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	412.231689453125	3	412.231189	1233.67174	1.934	0.00079726	-0.68164	-0.00028099	1.2524	0.00051626	412.2308161483838	65.879	3.828	62.933	62.452	66.28	-2.9459					181	75	4	0	0	0	0.68399	1	2663	2663		25.068	0	1	1016400	+		5390	23706	4289	4298	6606	6606					0.06424757597551434
DSSRGPLK	8	Unmodified	_DSSRGPLK_					0	0	0		tr|A0A7D7A4E8|A0A7D7A4E8_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02745PE=4SV=1	tr|A0A7D7A4E8|A0A7D7A4E8_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02745PE=4SV=1	tr|A0A7D7A4E8|A0A7D7A4E8_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02745PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	430.235595703125	2	430.235242	858.45593	-0.62306	-0.00026806	1.973	0.00084887	1.35	0.00058081	430.23618991101546	37.333	0.64686	37.333	37.114	37.761	0					26	13	4	0	0	0	0.66057	1	2045	2045		51.335	3.4199	1	920680			5391	36142	4290	4299	6607	6607					0.02104041203574525
DSSRIVRA	8	Unmodified	_DSSRIVRA_					0	0	0		ENST00000505243.5_1_4:152020882-152021026:+|nuORF	ENST00000505243.5_1_4:152020882-152021026:+|nuORF	ENST00000505243.5_1_4:152020882-152021026:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	452.7684020996094	2	452.253966	902.493378	0.44905	0.00020308	-4.1881	-0.0018941	-3.739	-0.001691	452.2519721526157	70.795	0.46509	70.795	70.603	71.068	0					20	11	2	0	0	0	0.028476	1	6803	6803		23.042	3.6825	1	1018200			5392	12892	4291	4300	6608	6608					0.0382313246918784
DSSRLLYGN	9	Unmodified	_DSSRLLYGN_					0	0	0		TENM3|p.D1682Efs*31|1|0.11|ENSG00000218336|chr4:182773624-182773625|-/AATGGGCCTGGGGTCAGCTGCACAAAAGTCCCAG|frameshift_variant;ENSG00000218336|ENST00000511685|TENM3;ENST00000513201.1_1_4:183245173-183270995:+|nuORF	TENM3|p.D1682Efs*31|1|0.11|ENSG00000218336|chr4:182773624-182773625|-/AATGGGCCTGGGGTCAGCTGCACAAAAGTCCCAG|frameshift_variant	TENM3|p.D1682Efs*31|1|0.11|ENSG00000218336|chr4:182773624-182773625|-/AATGGGCCTGGGGTCAGCTGCACAAAAGTCCCAG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.7786865234375	2	512.756538	1023.49852	2.2895	0.001174	4.3643	0.0022378	6.6538	0.0034118	512.7587219408588	98.748	0.76578	98.748	98.552	99.318	0					35	18	3	0	0	0	0.027462	1	10880	10880		15.642	0	1	2754800			5393	9218	4292	4301	6609	6609					-0.012286084588481572
DSSYQAGAGGL	11	Unmodified	_DSSYQAGAGGL_					0	0	0			REV__ENSG00000176845|ENST00000320095|METRNL	REV__ENSG00000176845|ENST00000320095|METRNL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.3027954101562	2	513.230353	1024.44615	-0.62393	-0.00032022	-2.6397	-0.0013548	-3.2636	-0.001675	513.2288203838542	103.68	0.57693	101.56	101.38	101.96	-2.1192					11	10	2	0	0	0	0.025496	1	9404	9404		40.778	0	1	8170.6	+		5394	21971	4293	4302	6610	6610					-0.06509191592465413
DSTPLRYL	8	Unmodified	_DSTPLRYL_					0	0	0			REV__nc|ENSG00000005810|O75592-2|MYCBP2	REV__nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-MSMS	OvCa9_classI_Rep3	3	482.75982666015625	2	482.758549	963.502546	2.1392	0.0010327	1.1547	0.00055742	3.2938	0.0015901	482.7588804234167	57.803	3.1186	54.676	53.456	56.575	-3.1264					158	85	3	0	0	0	0.74754	1	1683	1683		27.882	2.3082	1	89902	+		5395	16403	4294	4303	6611	6611					0.019334810348709652
DSTQRPEL	8	Unmodified	_DSTQRPEL_					0	0	0		ENST00000492023.1_1_11:695827-699038:+|nuORF	ENST00000492023.1_1_11:695827-699038:+|nuORF	ENST00000492023.1_1_11:695827-699038:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.7740173339844	2	473.235439	944.456324	-0.04408	-2.086E-05	1.3983	0.00066173	1.3542	0.00064087	473.23565021921826	70.485	0.43855	67.004	66.836	67.275	-3.4812					11	8	2	0	0	0	0.028476	1	5324	5324		44.117	6.9577	1	21029			5396	12720	4295	4304	6612	6612					-0.01812583867229023
DSVKLTQIS	9	Unmodified	_DSVKLTQIS_					0	0	0			REV__tr|A0A7D6VSW7|A0A7D6VSW7_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06825PE=4SV=1	REV__tr|A0A7D6VSW7|A0A7D6VSW7_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06825PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.788818359375	2	495.776939	989.539325	0.15078	7.4753E-05	-4.2618	-0.0021129	-4.111	-0.0020381	495.7732970811293	71.897	0.37895	71.897	71.707	72.086	0					18	8	3	0	0	0	0.027447	1	6972	6972		47.657	0	1	370010	+		5397	31549	4296	4305	6613	6613					0.04413732860757591
DSVLFLKKID	10	Unmodified	_DSVLFLKKID_					0	0	0		nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620-3|CUL4B	nc|ENSG00000158290|Q13620-3|CUL4B	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3425903320312	2	589.344989	1176.67542	-2.1868	-0.0012888	-1.3084	-0.00077111	-3.4952	-0.0020599	589.3441619466173	148.26	4.549	146.82	145.53	150.08	-1.435					304	95	6	0	0	0	0.79917	1	14660	14660		19.104	1.7386	1	385010			5398	5942	4297	4306	6614	6614					0.09415427371436635
DSVLTHLNLL	10	Unmodified	_DSVLTHLNLL_					0	0	0		ENSG00000171617|ENST00000302351|ENC1;ENC1|p.E81Rfs*113|1|0.11|ENSG00000171617|chr5:74636246-74636246|T/-|frameshift_variant;ENC1|p.W169Hfs*26|1|0.26|ENSG00000171617|chr5:74635981-74635982|-/TG|frameshift_variant	ENSG00000171617|ENST00000302351|ENC1	ENSG00000171617|ENST00000302351|ENC1	MULTI-MSMS	OvCa99_classI_Rep5	1	562.8235473632812	2	562.819138	1123.62372	2.4153	0.0013594	3.8744	0.0021806	6.2897	0.0035399	562.8211562015002	137.88	0.56818	137.88	137.54	138.11	0					28	12	3	0	0	0	0.59317	1	16068	16068		42.864	0.46813	1	191770			5399	7220	4298	4307	6615	6615					0.06685683677528687
DSVPPFLK	8	Unmodified	_DSVPPFLK_					0	0	0		ENST00000368321.7_1_1:155883759-155883837:-|nuORF	ENST00000368321.7_1_1:155883759-155883837:-|nuORF	ENST00000368321.7_1_1:155883759-155883837:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.9305725097656	2	451.752736	901.490919	-0.14565	-6.5796E-05	-0.56262	-0.00025417	-0.70827	-0.00031996	451.7528036100495	65.848	0.29317	62.363	62.227	62.521	-3.4854					7	5	2	0	0	0	0.028476	1	4749	4749		57.811	19.005	1	14823			5400	10866	4299	4308	6616	6616					0.0362328401151899
DSVRALWL	8	Unmodified	_DSVRALWL_					0	0	0		ENST00000466796.1_1_1:32681957-32682056:-|nuORF	ENST00000466796.1_1_1:32681957-32682056:-|nuORF	ENST00000466796.1_1_1:32681957-32682056:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	480.2767639160156	2	480.269084	958.523616	-0.67122	-0.00032236	0.91605	0.00043995	0.24483	0.00011758	480.26930869760986	91.546	1.1594	89.521	88.93	90.089	-2.0241					69	22	4	0	0	0	0.67745	1	5768	5768		47.916	5.4411	1	423390			5401	12298	4300	4309	6617	6617					0.04269491134380132
DSVVVYLLL	9	Unmodified	_DSVVVYLLL_					0	0	0			REV__ENSG00000165621|ENST00000541038|OXGR1	REV__ENSG00000165621|ENST00000541038|OXGR1	MULTI-SECPEP	OvCa9_classI_Rep3	3	510.8381042480469	2	510.802426	1019.5903	-0.85405	-0.00043625	-1.7108	-0.00087386	-2.5648	-0.0013101	510.80139077850555	76.857	2.7157	74.485	73.67	76.385	-2.3715					118	52	4	0	0	0	0.027462	1	3897	3897		24.203	11.996	1	331810	+		5402	15903	4301	4310	6618	6618					0.08128681905623125
DSVVVYLLL	9	Unmodified	_DSVVVYLLL_					0	0	0			REV__ENSG00000165621|ENST00000541038|OXGR1	REV__ENSG00000165621|ENST00000541038|OXGR1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	510.802426	1019.5903	-0.41906	-0.00021405	-2.304	-0.0011769	-2.7231	-0.0013909	510.8010994004582	77.473	1.3531	74.657	74.342	75.696	-2.8165	0.19071	-0.00038344	NaN	24.203	69	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	568210	+		5403	15903	4301	4310							0.08128681905623125
DSYSAKITTK	10	Unmodified	_DSYSAKITTK_					0	0	0		tr|A0A7D7A2B5|A0A7D7A2B5_9CLOTDUF2922domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16120PE=4SV=1	tr|A0A7D7A2B5|A0A7D7A2B5_9CLOTDUF2922domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16120PE=4SV=1	tr|A0A7D7A2B5|A0A7D7A2B5_9CLOTDUF2922domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16120PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.3070068359375	2	557.292953	1112.57135	-0.013806	-7.6938E-06	-2.4447	-0.0013624	-2.4585	-0.0013701	557.7925887981977	80.121	0.39653	77.411	77.318	77.714	-2.7106					9	7	2	0	0	0	0.026931	1	6539	6539		37.812	22.17	1	24251			5404	36070	4302	4311	6619	6619					0.019571005438820066
DSYTKREV	8	Unmodified	_DSYTKREV_					0	0	0		tr|A0A7D7A5L2|A0A7D7A5L2_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06535PE=4SV=1	tr|A0A7D7A5L2|A0A7D7A5L2_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06535PE=4SV=1	tr|A0A7D7A5L2|A0A7D7A5L2_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06535PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.2814636230469	2	499.251089	996.487624	0.015886	7.9311E-06	-0.63867	-0.00031886	-0.62278	-0.00031093	499.2508908547632	58.33	0.3337	58.33	58.112	58.446	0					11	7	2	0	0	0	0.028476	1	4927	4927		30.504	0	1	200290			5405	36173	4303	4312	6620	6620					-0.010760108331396623
DSYVTFVL	8	Unmodified	_DSYVTFVL_					0	0	0		ENST00000551446.5_3_12:104525566-104529274:-|nuORF	ENST00000551446.5_3_12:104525566-104529274:-|nuORF	ENST00000551446.5_3_12:104525566-104529274:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.3288879394531	2	472.242201	942.469849	-0.29317	-0.00013845	2.1866	0.0010326	1.8934	0.00089414	472.2435832604561	35.377	0.5134	35.377	35.1	35.614	0					15	10	2	0	0	0	0.028476	1	1777	1777		25.45	0	1	33800			5406	13600	4304	4313	6621	6621					-0.0036872608798148576
DSYYYILV	8	Unmodified	_DSYYYILV_					0	0	0		tr|A0A7D7A591|A0A7D7A591_9CLOTYegS/Rv2252/BmrUfamilylipidkinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05050PE=3SV=1	tr|A0A7D7A591|A0A7D7A591_9CLOTYegS/Rv2252/BmrUfamilylipidkinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05050PE=3SV=1	tr|A0A7D7A591|A0A7D7A591_9CLOTYegS/Rv2252/BmrUfamilylipidkinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05050PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.297119140625	2	518.255308	1034.49606	1.0122	0.00052459	-2.6578	-0.0013774	-1.6456	-0.00085282	518.2537987373814	109.84	0.54269	109.84	109.64	110.18	0					25	11	3	0	0	0	0.028476	1	12436	12436		42.474	0	1	290330			5407	36162	4305	4314	6622	6622					-0.01980456916521689
DTACWLTSL	9	Unmodified	_DTACWLTSL_					0	0	0			REV__ENST00000397149.3_1_9:33053134-33053182:-|nuORF	REV__ENST00000397149.3_1_9:33053134-33053182:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	505.2367248535156	2	505.236593	1008.45863	-0.45968	-0.00023225	2.7093	0.0013688	2.2496	0.0011366	505.2378766540362	40.453	0.41875	40.453	40.247	40.666	0					19	8	3	0	0	0	0.29717	1	2461	2461		63.306	10.37	1	610470	+		5408	25345	4306	4315	6623	6623					-0.04525871453790842
DTACWLTSL	9	Unmodified	_DTACWLTSL_					0	0	0			REV__ENST00000397149.3_1_9:33053134-33053182:-|nuORF	REV__ENST00000397149.3_1_9:33053134-33053182:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	505.236593	1008.45863	-0.45968	-0.00023225	2.7093	0.0013688	2.2496	0.0011366	505.2378766540362	40.453	0.41875	40.453	40.247	40.666	0	0	0	NaN	63.306	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	610470	+		5409	25345	4306	4315							-0.04525871453790842
DTAGLTSH	8	Unmodified	_DTAGLTSH_					0	0	0			REV__ENSG00000185823|ENST00000329468|NPAP1	REV__ENSG00000185823|ENST00000329468|NPAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	401.19049072265625	2	401.1905	800.366446	1.3604	0.00054579	-1.1557	-0.00046364	0.20477	8.2151E-05	401.19001463175636	33.112	1.3656	33.112	32.7	34.065	0					61	27	4	0	0	0	0.44269	1	1518	1518		83.287	3.348	1	2324300	+		5410	22535	4307	4316	6624	6624					-0.04172213475806075
DTALLSLKL	9	Unmodified	_DTALLSLKL_					0	0	0			REV__ENST00000379341.8_1_X:23689714-23693171:+|nuORF	REV__ENST00000379341.8_1_X:23689714-23693171:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.28131103515625	2	487.30005	972.585547	0.12661	6.1695E-05	-0.45438	-0.00022142	-0.32778	-0.00015973	487.2997263276211	93.403	1.2904	92.235	91.953	93.244	-1.168					46	24	3	0	0	0	0.02744	1	8422	8422		62.107	14.45	1	75901	+		5411	25154	4308	4317	6625	6625					0.09815797762848888
DTALLSLKL	9	Unmodified	_DTALLSLKL_					0	0	0			REV__ENST00000379341.8_1_X:23689714-23693171:+|nuORF	REV__ENST00000379341.8_1_X:23689714-23693171:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	487.30005	972.585547	-1.2931	-0.00063014	0.99561	0.00048516	-0.29752	-0.00014498	487.3004483043275	94.084	1.22	92.188	91.744	92.964	-1.8956	-0.049457	0.00084109	NaN	56.434	45	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113020	+		5412	25154	4308	4317							0.09815797762848888
DTALLSLKL	9	Unmodified	_DTALLSLKL_					0	0	0			REV__ENST00000379341.8_1_X:23689714-23693171:+|nuORF	REV__ENST00000379341.8_1_X:23689714-23693171:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	487.30005	972.585547	-0.39495	-0.00019246	0.068338	3.3301E-05	-0.32661	-0.00015916	487.2999929425406	94.758	0.95219	92.289	92.01	92.962	-2.4685	0.052064	-6.2627E-05	NaN	56.434	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102710	+		5413	25154	4308	4317							0.09815797762848888
DTANKALGSLT	11	Unmodified	_DTANKALGSLT_					0	0	0			REV__ENST00000524939.1_1_1:160252194-160254914:-|nuORF	REV__ENST00000524939.1_1_1:160252194-160254914:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.821044921875	2	545.790578	1089.5666	-1.0498	-0.00057297	3.2292	0.0017625	2.1794	0.0011895	545.7928422356372	117.59	1.4157	116.25	115.53	116.94	-1.3444					37	26	2	0	0	0	0.025406	1	10991	10991		72.879	19.528	1	53880	+		5414	20772	4309	4318	6626	6626					0.0254021640114388
DTANKALGSLT	11	Unmodified	_DTANKALGSLT_					0	0	0			REV__ENST00000524939.1_1_1:160252194-160254914:-|nuORF	REV__ENST00000524939.1_1_1:160252194-160254914:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	545.790578	1089.5666	-1.0479	-0.00057193	4.7849	0.0026115	3.737	0.0020396	545.7928083507309	116.57	0.84111	116.44	116.17	117.01	-0.12869	0.092881	0.00025728	NaN	38.754	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34807	+		5415	20772	4309	4318							0.0254021640114388
DTAYCDCTL	9	Unmodified	_DTAYCDCTL_					0	0	0			REV__ENSG00000097046|ENST00000234626|CDC7	REV__ENSG00000097046|ENST00000234626|CDC7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.27734375	2	502.688618	1003.36268	0.52782	0.00026533	-0.46327	-0.00023288	0.064543	3.2445E-05	502.6882404662003	84.694	0.67254	82.032	81.822	82.494	-2.6629					21	13	2	0	0	0	0.027462	1	7095	7095		21.96	3.6355	1	60329	+		5416	17311	4310	4319	6627	6627					-0.13886387356205887
DTCALKIVRPL	11	Unmodified	_DTCALKIVRPL_					0	0	0			REV__nc|ENSG00000186092|Q8NH21|OR4F5	REV__nc|ENSG00000186092|Q8NH21|OR4F5	MULTI-SECPEP	OvCa9_classI_Rep2	2	410.22747802734375	3	410.240919	1227.70093	-0.50732	-0.00020812	2.8644	0.0011751	2.3571	0.00096698	410.2419110291961	38.292	0.64294	35.582	35.419	36.062	-2.7097					19	12	2	0	0	0	0.025911	1	1789	1789		19.263	5.8086	1	14858	+		5417	22555	4311	4320	6628	6628					0.09618578622212226
DTDAFFNMPI	10	Unmodified	_DTDAFFNMPI_					0	0	0		L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|289|2|anti-sense	L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|289|2|anti-sense	L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|289|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	585.8107299804688	2	585.760432	1169.50631	0.45251	0.00026506	-2.7019	-0.0015827	-2.2494	-0.0013176	585.7581401377385	67.357	0.44712	63.867	63.689	64.136	-3.4902					10	8	2	0	0	0	0.026936	1	4936	4936		37.812	0	1	24925			5418	14565	4312	4321	6629	6629					-0.07166217253598006
DTDHNELE	8	Unmodified	_DTDHNELE_					0	0	0			REV__ENSG00000104237|ENST00000220676|RP1	REV__ENSG00000104237|ENST00000220676|RP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.293701171875	2	486.698886	971.383219	1.9146	0.00093182	4.0544	0.0019733	5.969	0.0029051	486.7001880632006	136.56	0.23944	136.56	136.49	136.73	0					6	4	2	0	0	0	0.028476	1	15927	15927		34.173	7.3764	1	17037	+		5419	17654	4313	4322	6630	6630					-0.10361757380508152
DTDLQPKSI	9	Unmodified	_DTDLQPKSI_					0	0	0			REV__nc|ENSG00000187642|Q5SV97-3|PERM1	REV__nc|ENSG00000187642|Q5SV97-3|PERM1	MULTI-MSMS	OvCa9_classI_Rep2	2	508.76678466796875	2	508.766571	1015.51859	-2.5431	-0.0012939	2.0709	0.0010536	-0.47219	-0.00024023	508.7675091980884	37.121	1.4274	34.411	33.942	35.37	-2.7097					85	28	4	0	0	0	0.44568	1	1672	1672		47.657	1.6851	1	798860	+		5420	22651	4314	4323	6631	6631					0.011451424810957178
DTDYWLAESL	10	Unmodified	_DTDYWLAESL_					0	0	0			REV__tr|A0A7D6VUB8|A0A7D6VUB8_9CLOTATP-dependentDNAhelicaseRecGC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01415PE=4SV=1	REV__tr|A0A7D6VUB8|A0A7D6VUB8_9CLOTATP-dependentDNAhelicaseRecGC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01415PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	606.8341064453125	2	606.774593	1211.53463	1.2262	0.00074401	-0.42097	-0.00025543	0.80521	0.00048858	607.2754471997978	88.319	0.15292	86.188	86.112	86.265	-2.1309					4	2	2	0	0	0	0.026802	1	5356	5356		26.693	4.733	1	8403.3	+		5421	31667	4315	4324	6632	6632					-0.06267196072667502
DTEDLKLPK	9	Unmodified	_DTEDLKLPK_					0	0	0			REV__ENSG00000115267|ENST00000649979|IFIH1	REV__ENSG00000115267|ENST00000649979|IFIH1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.3072509765625	2	529.790047	1057.56554	-0.55363	-0.00029331	0.50972	0.00027005	-0.043907	-2.3261E-05	530.2923278366493	59.763	0.29402	56.371	56.248	56.542	-3.392					8	5	2	0	0	0	0.027343	1	3997	3997		68.787	2.3575	1	10066	+		5422	18229	4316	4325	6633	6633					0.039060020322040145
DTEIQAFLL	9	Unmodified	_DTEIQAFLL_					0	0	0		nc|ENSG00000142166|P17181-4|IFNAR1;nc|ENSG00000142166|P17181-3|IFNAR1;ENSG00000142166|ENST00000270139|IFNAR1;nc|ENSG00000142166|P17181-2|IFNAR1;IFNAR1|p.S422Lfs*20|1|0.22|ENSG00000142166|chr21:33352872-33352873|-/TT|frameshift_variant;IFNAR1|p.K417Rfs*25|1|0.04|ENSG00000142166|chr21:33352863-33352864|-/GG|frameshift_variant	nc|ENSG00000142166|P17181-4|IFNAR1	nc|ENSG00000142166|P17181-4|IFNAR1	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.7838134765625	2	525.279315	1048.54408	-0.0041363	-2.1727E-06	-0.39743	-0.00020876	-0.40157	-0.00021094	525.279292250159	97.523	0.8883	96.565	96.118	97.006	-0.95857					27	17	2	0	0	0	0.027426	1	8868	8868		27.882	0	1	18275			5423	4956	4317	4326	6634	6634					0.02174617003538515
DTEVTQTPK	9	Unmodified	_DTEVTQTPK_					0	0	0		nc|ENSG00000211710|A0A577|TRBV4-1	nc|ENSG00000211710|A0A577|TRBV4-1	nc|ENSG00000211710|A0A577|TRBV4-1	MULTI-MSMS	OvCa99_classI_Rep5	1	509.7594299316406	2	509.756204	1017.49785	2.4457	0.0012467	-2.4539	-0.0012509	-0.008232	-4.1963E-06	509.7547216599888	89.006	0.75879	89.006	88.717	89.476	0					42	18	3	0	0	0	0.3076	1	9478	9478		62.107	1.9892	1	1860800			5424	15289	4318	4327	6635	6635					-0.010194478985681599
DTFAKDKT	8	Unmodified	_DTFAKDKT_					0	0	0			REV__nc|ENSG00000007062|O43490-5|PROM1	REV__nc|ENSG00000007062|O43490-5|PROM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	463.75238037109375	2	463.234907	924.455261	0.076389	3.5386E-05	0.25212	0.00011679	0.32851	0.00015218	463.23465619570675	64.974	0.67564	64.974	64.71	65.385	0					23	16	2	0	0	0	0.028476	1	5958	5958		32.812	0	1	243350	+		5425	16428	4319	4328	6636	6636					-0.00998798236150833
DTFFEIIYA	9	Unmodified	_DTFFEIIYA_					0	0	0			REV__nc|ENSG00000143303|Q96FB5-2|METTL25B	REV__nc|ENSG00000143303|Q96FB5-2|METTL25B	MULTI-MSMS	OvCa99_classI_Rep5	1	559.7745971679688	2	559.773865	1117.53318	0.15225	8.5227E-05	2.3268	0.0013025	2.4791	0.0013877	559.7752542520827	42.734	0.51735	42.734	42.539	43.057	0					31	9	5	0	0	0	0.61208	1	2762	2762		30.504	4.9296	1	807260	+		5426	19828	4320	4329	6637	6637					-0.020887853707336035
DTFFEIIYA	9	Unmodified	_DTFFEIIYA_					0	0	0			REV__nc|ENSG00000143303|Q96FB5-2|METTL25B	REV__nc|ENSG00000143303|Q96FB5-2|METTL25B	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	559.773865	1117.53318	0.15225	8.5227E-05	2.3268	0.0013025	2.4791	0.0013877	559.7752542520827	42.734	0.51735	42.734	42.539	43.057	0	0	0	NaN	30.504	31	9	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	807260	+		5427	19828	4320	4329							-0.020887853707336035
DTFSLIEHL	9	Unmodified	_DTFSLIEHL_					0	0	0		nc|ENSG00000166762|Q96P56-3|CATSPER2;ENST00000469461.5_1_15:43927692-43940259:-|nuORF;nc|ENSG00000166762|Q96P56-2|CATSPER2;ENSG00000166762|ENST00000396879|CATSPER2;nc|ENSG00000166762|Q96P56-4|CATSPER2;ENST00000415968.2_1_15:43932485-43940259:-|nuORF	nc|ENSG00000166762|Q96P56-3|CATSPER2;nc|ENSG00000166762|Q96P56-4|CATSPER2	nc|ENSG00000166762|Q96P56-4|CATSPER2	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.8085327148438	2	537.776939	1073.53933	0.45669	0.0002456	-0.89603	-0.00048186	-0.43934	-0.00023627	537.7764356268578	65.742	0.79805	63.047	62.62	63.418	-2.6958					24	15	2	0	0	0	0.027462	1	5079	5079		24.203	0	1	52057			5428	6708;11597	4321	4330	6638	6638					0.005497328607589225
DTFSLKDNIF	10	Unmodified	_DTFSLKDNIF_					0	0	0		tr|A0A7D7A6W9|A0A7D7A6W9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11705PE=3SV=1;tr|A0A7D6W2G1|A0A7D6W2G1_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05965PE=3SV=1	tr|A0A7D7A6W9|A0A7D7A6W9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11705PE=3SV=1	tr|A0A7D7A6W9|A0A7D7A6W9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11705PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	600.2978515625	2	600.300778	1198.587	0.42593	0.00025569	-3.4738	-0.0020853	-3.0479	-0.0018297	600.2986444844016	66.04	1.7869	63.345	62.872	64.659	-2.6958					108	35	5	0	0	0	0.56803	1	5110	5110		41.427	0.64845	1	817990			5429	35429	4322	4331	6639	6639					-0.004346129390569331
DTFSNPNIDLD	11	Unmodified	_DTFSNPNIDLD_					0	0	0		nc|ENSG00000120519|Q0GE19-3|SLC10A7;ENSG00000120519|ENST00000335472|SLC10A7;nc|ENSG00000120519|Q0GE19-1|SLC10A7	nc|ENSG00000120519|Q0GE19-3|SLC10A7	nc|ENSG00000120519|Q0GE19-3|SLC10A7	MULTI-SECPEP	OvCa99_classI_Rep5	1	624.82666015625	2	625.780407	1249.54626	1.9023	0.0011904	3.4095	0.0021336	5.3118	0.003324	625.782439768567	133.74	0.85027	133.74	133.44	134.29	0					30	17	2	0	0	0	0.025529	1	15521	15521		49.536	16.724	1	171990			5430	3433	4323	4332	6640	6640					-0.068529990493289
DTFVPMGFK	9	Unmodified	_DTFVPMGFK_					0	0	0		tr|A0A7D6VPD9|A0A7D6VPD9_9CLOTAminoacidABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22460PE=4SV=1	tr|A0A7D6VPD9|A0A7D6VPD9_9CLOTAminoacidABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22460PE=4SV=1	tr|A0A7D6VPD9|A0A7D6VPD9_9CLOTAminoacidABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22460PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.8174438476562	2	521.257328	1040.5001	-0.18563	-9.676E-05	-2.534	-0.0013209	-2.7196	-0.0014176	521.2560924216226	115.86	0.29659	114.47	114.32	114.61	-1.3977					9	5	2	0	0	0	0.027448	1	10814	10814		35.618	2.1027	1	7510			5431	34763	4324	4333	6641	6641					-0.01852690694431658
DTFVRHKV	8	Unmodified	_DTFVRHKV_					0	0	0		ENST00000524779.5_1_19:15226645-15228740:-|nuORF;ENST00000533086.5_1_19:15226645-15227634:-|nuORF	ENST00000524779.5_1_19:15226645-15228740:-|nuORF	ENST00000524779.5_1_19:15226645-15228740:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.2947082519531	2	501.279983	1000.54541	0.53744	0.00026941	4.1045	0.0020575	4.6419	0.0023269	501.2834613082344	87.315	0.6487	85.884	85.491	86.139	-1.4311					15	9	2	0	0	0	0.028476	1	7609	7609		40.573	1.7665	1	19653			5432	13169	4325	4334	6642	6642					0.04516295882956456
DTGKISSK	8	Unmodified	_DTGKISSK_					0	0	0		ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	417.9170837402344	2	418.229625	834.444697	-1.2031	-0.00050319	0.05408	2.2618E-05	-1.1491	-0.00048057	418.22967286076647	54.206	0.30717	50.959	50.774	51.081	-3.2474					13	5	3	0	0	0	0.028476	1	3351	3351		23.042	0	1	17093			5433	1665	4326	4335	6643	6643					0.020852191094263617
DTGNKLVSI	9	Unmodified	_DTGNKLVSI_					0	0	0			REV__ENST00000499601.2_1_5:179287055-179287091:+|nuORF	REV__ENST00000499601.2_1_5:179287055-179287091:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.7645568847656	2	473.763832	945.513111	0.54807	0.00025966	-0.88245	-0.00041807	-0.33438	-0.00015842	473.7633142764397	56.24	1.2651	52.945	52.567	53.832	-3.2944					70	24	4	0	0	0	0.31747	1	3601	3601		60.972	2.19	1	1136500	+		5434	26809	4327	4336	6644	6644					0.03817463689279066
DTGPHYYLL	9	Unmodified	_DTGPHYYLL_					0	0	0			REV__ENSG00000159792|ENST00000291041|PSKH1	REV__ENSG00000159792|ENST00000291041|PSKH1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	539.2835693359375	2	539.763832	1077.51311	0.061274	3.3074E-05	-1.3437	-0.00072528	-1.2824	-0.00069221	539.7635035241167	84.438	0.65256	81.775	81.594	82.247	-2.6629					20	13	2	0	0	0	0.027456	1	7109	7109		38.806	7.2763	1	79236	+		5435	20628	4328	4337	6645	6645					-0.022545363107155936
DTGPHYYLL	9	Unmodified	_DTGPHYYLL_					0	0	0			REV__ENSG00000159792|ENST00000291041|PSKH1	REV__ENSG00000159792|ENST00000291041|PSKH1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	539.763832	1077.51311	-1.1072	-0.00059765	0.49179	0.00026545	-0.61545	-0.0003322	539.7641052333955	83.544	0.40105	81.945	81.872	82.274	-1.5988	0.13192	0.0012411	NaN	38.806	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17992	+		5436	20628	4328	4337							-0.022545363107155936
DTGPHYYLL	9	Unmodified	_DTGPHYYLL_					0	0	0			REV__ENSG00000159792|ENST00000291041|PSKH1	REV__ENSG00000159792|ENST00000291041|PSKH1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	539.763832	1077.51311	-0.28605	-0.0001544	-0.86507	-0.00046693	-1.1511	-0.00062133	539.7632043936843	83.981	0.73183	81.72	81.478	82.21	-2.261	-0.093699	-0.00022371	NaN	38.806	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72241	+		5437	20628	4328	4337							-0.022545363107155936
DTGRGPRSVDM	11	Unmodified	_DTGRGPRSVDM_					0	0	0			REV__ENSG00000215182|ENST00000621226|MUC5AC	REV__ENSG00000215182|ENST00000621226|MUC5AC	MULTI-SECPEP	OvCa9_classI_Rep3	3	594.8280029296875	2	595.782761	1189.55097	-0.24788	-0.00014768	-2.7653	-0.0016475	-3.0132	-0.0017952	596.2826662250459	77.112	0.83598	74.741	74.348	75.184	-2.3715					25	15	2	0	0	0	0.025746	1	3980	3980		41.427	0	1	31169	+		5438	23313	4329	4338	6646	6646					-0.036223933875589864
DTHKPLLVKLI	11	Unmodified	_DTHKPLLVKLI_					0	0	0		ENST00000426767.1_1_7:29690666-29690840:-|nuORF	ENST00000426767.1_1_7:29690666-29690840:-|nuORF	ENST00000426767.1_1_7:29690666-29690840:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	426.2709045410156	3	426.271096	1275.79146	1.3494	0.00057519	-1.3701	-0.00058404	-0.020773	-8.8549E-06	426.27044206107996	68.395	1.1503	65.581	65.312	66.462	-2.8144					52	22	4	0	0	0	0.70032	1	2972	2972		29.551	0.97402	1	185040			5439	11745	4330	4339	6647	6647					0.16459370942152418
DTIAHLMDVD	10	Unmodified	_DTIAHLMDVD_					0	0	0			REV__tr|A0A553SGN2|A0A553SGN2_NIACIPhosphoribosylformylglycinamidinesynthasesubunitPurQOS=NialliacirculansOX=1397GN=purQPE=3SV=1	REV__tr|A0A553SGN2|A0A553SGN2_NIACIPhosphoribosylformylglycinamidinesynthasesubunitPurQOS=NialliacirculansOX=1397GN=purQPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.8113403320312	2	565.263339	1128.51212	1.8871	0.0010667	0.68983	0.00038993	2.5769	0.0014566	565.2633182980845	110.28	1.2101	108.67	108.17	109.38	-1.6011					51	22	5	0	0	0	0.026688	1	10091	10091		40.778	11.608	1	116270	+		5440	29723	4331	4340	6648	6648					-0.04699118741928032
DTIAHLMDVD	10	Unmodified	_DTIAHLMDVD_					0	0	0			REV__tr|A0A553SGN2|A0A553SGN2_NIACIPhosphoribosylformylglycinamidinesynthasesubunitPurQOS=NialliacirculansOX=1397GN=purQPE=3SV=1	REV__tr|A0A553SGN2|A0A553SGN2_NIACIPhosphoribosylformylglycinamidinesynthasesubunitPurQOS=NialliacirculansOX=1397GN=purQPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	565.263339	1128.51212	0.18518	0.00010468	1.7306	0.00097825	1.9158	0.0010829	565.2641954012713	109	1.336	108.78	108.27	109.61	-0.22498	0.098594	4.3192E-05	NaN	40.778	37	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40600	+		5441	29723	4331	4340							-0.04699118741928032
DTIAHLMDVD	10	Unmodified	_DTIAHLMDVD_					0	0	0			REV__tr|A0A553SGN2|A0A553SGN2_NIACIPhosphoribosylformylglycinamidinesynthasesubunitPurQOS=NialliacirculansOX=1397GN=purQPE=3SV=1	REV__tr|A0A553SGN2|A0A553SGN2_NIACIPhosphoribosylformylglycinamidinesynthasesubunitPurQOS=NialliacirculansOX=1397GN=purQPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	565.263339	1128.51212	-0.36688	-0.00020738	2.283	0.0012905	1.9161	0.0010831	565.2646106105641	109.73	0.94434	108.59	108.3	109.24	-1.1444	-0.093403	0.00066767	NaN	40.778	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92621	+		5442	29723	4331	4340							-0.04699118741928032
DTIFPFHTV	9	Unmodified	_DTIFPFHTV_					0	0	0		tr|A0A553SKD5|A0A553SKD5_NIACIUPF0735ACTdomain-containingproteinCEQ21_18470OS=NialliacirculansOX=1397GN=CEQ21_18470PE=3SV=1	tr|A0A553SKD5|A0A553SKD5_NIACIUPF0735ACTdomain-containingproteinCEQ21_18470OS=NialliacirculansOX=1397GN=CEQ21_18470PE=3SV=1	tr|A0A553SKD5|A0A553SKD5_NIACIUPF0735ACTdomain-containingproteinCEQ21_18470OS=NialliacirculansOX=1397GN=CEQ21_18470PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.8324584960938	2	538.7742	1075.53385	1.7428	0.00093896	1.8974	0.0010223	3.6402	0.0019612	538.7739399293193	116.95	0.90424	116.95	116.42	117.32	0					37	19	3	0	0	0	0.027462	1	13334	13334		23.042	0	1	300440			5443	33606	4332	4341	6649	6649					-0.0008994593106308457
DTIMDPAVK	9	Unmodified	_DTIMDPAVK_					0	0	0			REV__ENST00000337537.7_1_14:63839095-63839197:-|nuORF	REV__ENST00000337537.7_1_14:63839095-63839197:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.25042724609375	2	495.252243	988.489932	-0.0181	-8.964E-06	-3.3889	-0.0016784	-3.407	-0.0016873	495.25040292032213	102.48	1.1559	100.28	99.884	101.04	-2.1994					56	21	4	0	0	0	0.40667	1	9232	9232		51.335	3.6781	1	160120	+		5444	24599	4333	4342	6650	6650					-0.004772984196961261
DTIMDPAVK	9	Unmodified	_DTIMDPAVK_					0	0	0			REV__ENST00000337537.7_1_14:63839095-63839197:-|nuORF	REV__ENST00000337537.7_1_14:63839095-63839197:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	495.252243	988.489932	-0.88341	-0.00043751	-2.4237	-0.0012003	-3.3071	-0.0016378	495.250801042063	101.27	1.2885	100.51	99.674	100.96	-0.76401	0.14795	0.00039158	NaN	51.335	54	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46225	+		5445	24599	4333	4342							-0.004772984196961261
DTIMDPAVK	9	Unmodified	_DTIMDPAVK_					0	0	0			REV__ENST00000337537.7_1_14:63839095-63839197:-|nuORF	REV__ENST00000337537.7_1_14:63839095-63839197:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	495.252243	988.489932	-0.98351	-0.00048709	-2.5399	-0.0012579	-3.5234	-0.001745	495.25087058607147	101.81	1.2036	100.29	99.898	101.1	-1.5211	-0.070258	0.00027647	NaN	51.335	63	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163360	+		5446	24599	4333	4342							-0.004772984196961261
DTINDKVII	9	Unmodified	_DTINDKVII_					0	0	0		tr|A0A7D6ZWL4|A0A7D6ZWL4_9CLOTComFfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19375PE=4SV=1	tr|A0A7D6ZWL4|A0A7D6ZWL4_9CLOTComFfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19375PE=4SV=1	tr|A0A7D6ZWL4|A0A7D6ZWL4_9CLOTComFfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19375PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.3114624023438	2	515.792589	1029.57063	-1.152	-0.00059419	-2.0228	-0.0010434	-3.1748	-0.0016375	515.7930567067193	54.105	1.1262	50.858	50.364	51.491	-3.2474					49	21	5	0	0	0	0.027433	1	3323	3323		71.296	19.96	1	188100			5447	35846	4334	4343	6651	6651					0.057023058948516336
DTINDKVII	9	Unmodified	_DTINDKVII_					0	0	0		tr|A0A7D6ZWL4|A0A7D6ZWL4_9CLOTComFfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19375PE=4SV=1	tr|A0A7D6ZWL4|A0A7D6ZWL4_9CLOTComFfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19375PE=4SV=1	tr|A0A7D6ZWL4|A0A7D6ZWL4_9CLOTComFfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19375PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.792589	1029.57063	-0.98259	-0.00050681	-4.3919	-0.0022653	-5.3745	-0.0027721	515.7895063832244	53.662	1.0444	50.848	50.429	51.473	-2.8139	-0.0049352	-0.0012734	NaN	71.296	47	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55107			5448	35846	4334	4343							0.057023058948516336
DTIWKPCLKI	10	Unmodified	_DTIWKPCLKI_					0	0	0		Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|38|1|sense	Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|38|1|sense	Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|38|1|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	608.83642578125	2	608.841559	1215.66857	-3.9035	-0.0023766	-3.6917	-0.0022476	-7.5952	-0.0046243	608.8391511731406	151.54	1.2369	151.31	150.94	152.18	-0.22697					74	24	4	0	0	0	0.64697	1	15389	15389		36.447	2.2742	1	158260			5449	14362	4335	4344	6652	6652					0.06935791219211751
DTKARLRRVRQ	11	Unmodified	_DTKARLRRVRQ_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.25823974609375	3	466.951531	1397.83276	-0.30016	-0.00014016	1.5352	0.00071686	1.235	0.00057671	466.9522064940395	62.863	1.6895	59.405	59.16	60.85	-3.4577					97	34	4	0	0	0	0.026174	1	4462	4462		28.577	18.473	1	396670			5450	1000	4336	4345	6653	6653					0.14975944754155535
DTKCGILVMP	10	Unmodified	_DTKCGILVMP_					0	0	0			REV__nc|ENSG00000139725|Q9HBH0-2|RHOF	REV__nc|ENSG00000139725|Q9HBH0-2|RHOF	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.778564453125	2	538.77757	1075.54059	-1.1059	-0.00059585	0.38018	0.00020483	-0.72576	-0.00039102	538.7779967399368	74.405	1.3444	71.174	70.861	72.205	-3.2308					49	27	3	0	0	0	0.35465	1	5812	5812		74.255	0.28031	1	1156500	+		5451	19632	4337	4346	6654	6654					0.005839076336542348
DTKEKKEKK	9	Unmodified	_DTKEKKEKK_					0	0	0		TAF11-MYO19|1|fusion;TAF11-MYO19|2|fusion;nc|ENSG00000064995|Q15544-2|TAF11;ENSG00000064995|ENST00000361288|TAF11;FOXJ3-TAF11|1|fusion	TAF11-MYO19|1|fusion	TAF11-MYO19|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3281860351562	2	567.32987	1132.64519	-2.6412	-0.0014984	2.333	0.0013236	-0.30818	-0.00017484	567.3310908608092	141.92	3.9983	140.91	138.91	142.91	-1.0106					224	80	5	0	0	0	0.64427	1	11823	11823		26.693	1.1189	1	127690			5452	32942	4338	4347	6655	6655					0.08417068706239661
DTKEMIYPI	9	Unmodified	_DTKEMIYPI_					0	0	0			REV__tr|A0A553SJW1|A0A553SJW1_NIACIAcetatekinaseOS=NialliacirculansOX=1397GN=ackAPE=3SV=1	REV__tr|A0A553SJW1|A0A553SJW1_NIACIAcetatekinaseOS=NialliacirculansOX=1397GN=ackAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.3421630859375	2	555.281	1108.54745	-1.25	-0.00069409	1.0184	0.0005655	-0.23158	-0.00012859	555.2813491492784	126.93	0.89322	125.49	125.19	126.09	-1.4357					23	17	2	0	0	0	0.02744	1	12115	12115		36.447	0	1	16913	+		5453	30049	4339	4348	6656	6656					-0.0024845621412623586
DTKILGNPTER	11	Unmodified	_DTKILGNPTER_					0	0	0		ENST00000335754.7_1_3:53910735-53911292:-|nuORF	ENST00000335754.7_1_3:53910735-53911292:-|nuORF	ENST00000335754.7_1_3:53910735-53911292:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	622.3392333984375	2	622.335684	1242.65681	0.46643	0.00029028	2.8427	0.0017691	3.3091	0.0020594	622.3373220061544	159.06	1.8648	159.06	158.69	160.56	0					99	37	4	0	0	0	0.71048	1	18692	18692		26.063	0.48933	1	3450400			5454	10502	4340	4349	6657	6657					0.04519265729572908
DTKKDKAR	8	Unmodified	_DTKKDKAR_					0	0	0			REV__ENST00000492390.5_1_1:1636243-1639660:-|nuORF	REV__ENST00000492390.5_1_1:1636243-1639660:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.7575988769531	2	481.274898	960.535243	0.43644	0.00021005	-0.51132	-0.00024609	-0.074889	-3.6042E-05	481.2745244765276	38.076	0.89202	35.15	34.907	35.799	-2.9264					40	17	3	0	0	0	0.028476	1	1462	1462		15.642	0	1	106440	+		5455	16445	4341	4350	6658	6658					0.05339688157710043
DTKKSQAK	8	Unmodified	_DTKKSQAK_					0	0	0		ENSG00000166866|ENST00000300119|MYO1A	ENSG00000166866|ENST00000300119|MYO1A	ENSG00000166866|ENST00000300119|MYO1A	MULTI-MSMS	OvCa9_classI_Rep2	2	453.2557067871094	2	453.256174	904.497795	0.87584	0.00039698	-0.9165	-0.00041541	-0.040654	-1.8427E-05	453.2556671396332	49.258	2.2776	46.498	46.078	48.356	-2.7603					121	45	5	0	0	0	0.68714	1	3130	3130		45.952	1.8352	1	1197000			5456	6726	4342	4351	6659	6659					0.0417259689210141
DTKYKYTDN	9	Unmodified	_DTKYKYTDN_					0	0	0			REV__STXBP3|p.N396Mfs*7|1|0.17|ENSG00000116266|chr1:108796307-108796316|TCAACAAAAA/-|frameshift_variant	REV__STXBP3|p.N396Mfs*7|1|0.17|ENSG00000116266|chr1:108796307-108796316|TCAACAAAAA/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.3125	2	574.266936	1146.51932	-0.11621	-6.6735E-05	0.91348	0.00052458	0.79727	0.00045784	574.2673415937758	65.027	0.88252	65.027	64.544	65.426	0					33	21	3	0	0	0	0.027462	1	6001	6001		18.262	3.3972	1	1236000	+		5457	18297	4343	4352	6660	6660					-0.04808062869847163
DTKYSNSI	8	Unmodified	_DTKYSNSI_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-MSMS	OvCa99_classI_Rep5	1	464.22564697265625	2	464.224539	926.434526	-0.19641	-9.1178E-05	0.17858	8.2901E-05	-0.017829	-8.2768E-06	464.22447362124683	58.721	0.62571	58.721	58.53	59.156	0					35	15	4	0	0	0	0.60899	1	5006	5006		62.107	5.3864	1	2267100			5458	9229	4344	4353	6661	6661					-0.03163388615803342
DTKYVLCVL	9	Unmodified	_DTKYVLCVL_					0	0	0			REV__ENSG00000143742|ENST00000304786|SRP9	REV__ENSG00000143742|ENST00000304786|SRP9	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.7660522460938	2	527.286085	1052.55762	2.6361	0.00139	-1.5682	-0.00082688	1.0679	0.0005631	527.7848719324687	90.21	0.36959	90.21	89.977	90.346	0					12	8	2	0	0	0	0.027462	1	9667	9667		34.173	3.6689	1	199780	+		5459	19863	4345	4354	6662	6662					0.0334415151110079
DTLAIRNL	8	Unmodified	_DTLAIRNL_					0	0	0			REV__ENSG00000134480|ENST00000256897|CCNH	REV__ENSG00000134480|ENST00000256897|CCNH	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.7508239746094	2	458.266542	914.51853	-0.84615	-0.00038776	0.038272	1.7539E-05	-0.80788	-0.00037022	458.2666727530105	36.566	0.57997	36.566	36.351	36.931	0					16	12	2	0	0	0	0.028476	1	1985	1985		65.803	16.362	1	70235	+		5460	19207	4346	4355	6663	6663					0.05785187271760606
DTLAIRNL	8	Unmodified	_DTLAIRNL_					0	0	0			REV__ENSG00000134480|ENST00000256897|CCNH	REV__ENSG00000134480|ENST00000256897|CCNH	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	458.266542	914.51853	-0.20328	-9.3158E-05	3.749	0.001718	3.5457	0.0016249	458.2680968051855	39.477	0.24823	36.551	36.395	36.643	-2.9264	-0.0076863	0.0021675	NaN	65.803	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3274	+		5461	19207	4346	4355							0.05785187271760606
DTLAVMSVDL	10	Unmodified	_DTLAVMSVDL_					0	0	0		HYOU1|p.Q990Rfs*5|1|0.05|ENSG00000149428|chr11:119045626-119045626|T/-|frameshift_variant;ENSG00000149428|ENST00000617285|HYOU1;ENST00000529174.1_1_11:118926460-118927810:-|nuORF;ENST00000526354.1_1_11:118926460-118927810:-|nuORF;ENST00000533381.5_1_11:118925895-118927580:-|nuORF	HYOU1|p.Q990Rfs*5|1|0.05|ENSG00000149428|chr11:119045626-119045626|T/-|frameshift_variant	HYOU1|p.Q990Rfs*5|1|0.05|ENSG00000149428|chr11:119045626-119045626|T/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.7874755859375	2	532.270632	1062.52671	-0.18529	-9.8624E-05	-3.0442	-0.0016203	-3.2295	-0.001719	532.7685545149873	71.219	0.43918	71.219	71.068	71.507	0					23	9	3	0	0	0	0.026849	1	6900	6900		32.812	6.1195	1	282060			5462	5458	4347	4356	6664	6664					-0.0020504659376001655
DTLFCKYQ	8	Unmodified	_DTLFCKYQ_					0	0	0		ENSG00000156787|ENST00000287380|TBC1D31;nc|ENSG00000156787|Q96DN5-3|TBC1D31;nc|ENSG00000156787|Q96DN5-2|TBC1D31;ENST00000524307.5_1_8:124089445-124141439:+|nuORF;ENST00000521980.1_1_8:124096343-124109714:+|nuORF;ENST00000518099.5_1_8:124085009-124113262:+|nuORF	ENSG00000156787|ENST00000287380|TBC1D31	ENSG00000156787|ENST00000287380|TBC1D31	MULTI-MSMS	OvCa9_classI_Rep3	3	509.2405090332031	2	509.239135	1016.46372	1.5833	0.00080629	1.5319	0.00078011	3.1152	0.0015864	509.2399801613584	60.9	1.9539	57.832	56.783	58.737	-3.0685					78	52	2	0	0	0	0.75241	1	2095	2095		25.45	0.93098	1	24864			5463	5856	4348	4357	6665	6665					-0.04385567591180006
DTLFLPNAR	9	Unmodified	_DTLFLPNAR_					0	0	0		ENST00000421413.6_1_6:133646543-133785920:+|nuORF	ENST00000421413.6_1_6:133646543-133785920:+|nuORF	ENST00000421413.6_1_6:133646543-133785920:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8192749023438	2	523.785099	1045.55564	2.2415	0.001174	-0.13438	-7.0387E-05	2.1071	0.0011037	523.7849060267475	86.651	0.49936	86.651	86.431	86.931	0					24	11	3	0	0	0	0.027426	1	9149	9149		47.657	3.5405	1	392500			5464	11681	4349	4358	6666	6666					0.03468858817495857
DTLGSSKKEL	10	Unmodified	_DTLGSSKKEL_					0	0	0			REV__tr|A0A7D6W360|A0A7D6W360_9CLOTDUF2087domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08735PE=4SV=1	REV__tr|A0A7D6W360|A0A7D6W360_9CLOTDUF2087domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08735PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	539.2911376953125	2	539.292953	1076.57135	-2.599	-0.0014016	-2.8172	-0.0015193	-5.4162	-0.0029209	539.2913266453872	108.37	2.7258	106.64	105.48	108.21	-1.7256					92	53	3	0	0	0	0.42082	1	9924	9924		65.465	12.114	1	121890	+		5465	31910	4350	4359	6667	6667					0.036131005439074215
DTLIREIHS	9	Unmodified	_DTLIREIHS_					0	0	0		tr|A0A7D6W451|A0A7D6W451_9CLOTphosphoserinephosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_08210PE=4SV=1	tr|A0A7D6W451|A0A7D6W451_9CLOTphosphoserinephosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_08210PE=4SV=1	tr|A0A7D6W451|A0A7D6W451_9CLOTphosphoserinephosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_08210PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.9971923828125	2	542.293288	1082.57202	-0.82067	-0.00044504	3.3979	0.0018427	2.5773	0.0013976	542.7956695672028	94.604	0.20026	92.135	92.01	92.21	-2.4685					6	3	2	0	0	0	0.027462	1	8290	8290		19.104	0	1	9680.3			5466	35469	4351	4360	6668	6668					0.03403939983604687
DTLKAITPE	9	Unmodified	_DTLKAITPE_					0	0	0		tr|A0A7D7ABZ9|A0A7D7ABZ9_9CLOTN-(5'-phosphoribosyl)anthranilateisomeraseOS=ClostridiumintestinaleOX=36845GN=trpFPE=3SV=1	tr|A0A7D7ABZ9|A0A7D7ABZ9_9CLOTN-(5'-phosphoribosyl)anthranilateisomeraseOS=ClostridiumintestinaleOX=36845GN=trpFPE=3SV=1	tr|A0A7D7ABZ9|A0A7D7ABZ9_9CLOTN-(5'-phosphoribosyl)anthranilateisomeraseOS=ClostridiumintestinaleOX=36845GN=trpFPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.32464599609375	2	494.27149	986.528426	-0.6332	-0.00031297	0.39812	0.00019678	-0.23508	-0.0001162	494.2714963003183	80.784	1.0777	78.073	77.858	78.936	-2.7106					44	21	3	0	0	0	0.02741	1	6622	6622		51.335	0	1	165990			5467	36220	4352	4361	6669	6669					0.03462330486456722
DTLKQFAR	8	Unmodified	_DTLKQFAR_					0	0	0			REV__ENST00000566568.1_1_16:31121058-31121856:+|nuORF	REV__ENST00000566568.1_1_16:31121058-31121856:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.7967224121094	2	489.771991	977.529429	1.6021	0.00078465	-3.9059	-0.001913	-2.3038	-0.0011284	489.770247572621	125.89	0.42055	125.89	125.71	126.13	0					14	8	2	0	0	0	0.028476	1	14541	14541		29.15	0	1	54343	+		5468	17622	4353	4362	6670	6670					0.039765896460380645
DTLLALNAAQY	11	Unmodified	_DTLLALNAAQY_					0	0	0			REV__nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L	REV__nc|ENSG00000157060|Q9BZQ2-2|SHCBP1L	MULTI-MSMS	OvCa9_classI_Rep3	3	596.8197021484375	2	596.814053	1191.61355	3.1335	0.0018701	0.67913	0.00040531	3.8127	0.0022754	596.8143723057162	57.305	2.9299	54.154	53.228	56.158	-3.1504					108	83	2	0	0	0	0.72473	1	1650	1650		19.104	2.6304	1	40554	+		5469	20509	4354	4363	6671	6671					0.025410759522856097
DTLLRQAL	8	Unmodified	_DTLLRQAL_					0	0	0			REV__ENSG00000186862|ENST00000619208|PDZD7	REV__ENSG00000186862|ENST00000619208|PDZD7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.7980651855469	2	465.274367	928.53418	-0.056146	-2.6123E-05	-0.17801	-8.2822E-05	-0.23415	-0.00010895	465.27416823288405	78.402	0.75626	75.586	75.263	76.019	-2.8165					35	15	3	0	0	0	0.028476	1	6362	6362		16.473	0	1	432150	+		5470	22615	4355	4364	6672	6672					0.06705473788792915
DTLPKRLLN	9	Unmodified	_DTLPKRLLN_					0	0	0		tr|A0A553SP16|A0A553SP16_NIACIFlagellarhook-lengthcontrolproteinFliKOS=NialliacirculansOX=1397GN=CEQ21_25480PE=4SV=1	tr|A0A553SP16|A0A553SP16_NIACIFlagellarhook-lengthcontrolproteinFliKOS=NialliacirculansOX=1397GN=CEQ21_25480PE=4SV=1	tr|A0A553SP16|A0A553SP16_NIACIFlagellarhook-lengthcontrolproteinFliKOS=NialliacirculansOX=1397GN=CEQ21_25480PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.8619384765625	2	535.321848	1068.62914	1.8529	0.00099191	0.67281	0.00036017	2.5257	0.0013521	535.3223100273624	112.68	0.22285	112.68	112.52	112.74	0					6	4	2	0	0	0	0.027418	1	12817	12817		62.107	10.915	1	92998			5471	33993	4356	4365	6673	6673					0.09757407259985484
DTLRVFKI	8	Unmodified	_DTLRVFKI_					0	0	0		TBL2|p.M166I|1|0.05|ENSG00000106638|chr7:73573420-73573420|C/A|missense_variant	TBL2|p.M166I|1|0.05|ENSG00000106638|chr7:73573420-73573420|C/A|missense_variant	TBL2|p.M166I|1|0.05|ENSG00000106638|chr7:73573420-73573420|C/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	496.29949951171875	2	496.300384	990.586216	1.2461	0.00061845	-1.3256	-0.00065787	-0.079436	-3.9424E-05	496.29955522437075	123.03	1.3483	121.99	121.68	123.03	-1.0377					64	25	3	0	0	0	0.7224	1	9514	9514		38.806	1.647	1	228980			5472	32948	4357	4366	6674	6674					0.0905463720255284
DTLTRRLRELV	11	Unmodified	_DTLTRRLRELV_					0	0	0			REV__nc|ENSG00000164989|Q6TFL3-3|CCDC171	REV__nc|ENSG00000164989|Q6TFL3-3|CCDC171	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.2501525878906	3	457.940409	1370.7994	-0.33314	-0.00015256	0.21577	9.8808E-05	-0.11738	-5.3752E-05	457.9403867360513	53.819	0.56325	53.819	53.609	54.172	0					18	13	2	0	0	0	0.026174	1	4316	4316		12.433	0	1	268680	+		5473	21047	4358	4367	6675	6675					0.1288289819158308
DTMKRRIF	8	Unmodified	_DTMKRRIF_					0	0	0		nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8;DNAH8|p.D2535Vfs*3|1|0.07|ENSG00000124721|chr6:38883994-38883994|A/-|frameshift_variant;DNAH8|p.L2994Pfs*25|1|0.09|ENSG00000124721|chr6:38909633-38909634|-/CCCAGGCTCAAGCCATCCTCTCA|frameshift_variant;DNAH8|p.H3947Qfs*36|1|0.13|ENSG00000124721|chr6:38971631-38971638|ATGCTCGA/-|frameshift_variant	nc|ENSG00000124721|Q96JB1-2|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.803466796875	2	533.794943	1065.57533	-0.45094	-0.00024071	3.5454	0.0018925	3.0945	0.0016518	533.7986525404134	54.896	0.38956	54.896	54.675	55.064	0					12	8	2	0	0	0	0.028476	1	4442	4442		31.955	5.2619	1	293080			5474	3675	4359	4368	6676	6676					0.04516911556629566
DTMLFVTNL	9	Unmodified	_DTMLFVTNL_					0	0	0			REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9	REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.3720092773438	2	527.267893	1052.52123	-0.11495	-6.061E-05	1.4343	0.00075627	1.3194	0.00069566	527.268565123981	57.185	0.51936	57.185	56.918	57.438	0					18	11	2	0	0	0	0.027462	1	4788	4788		27.882	0	1	420940	+		5475	16315	4360	4369	6677	6677					-0.0029272538561144756
DTMLVNYSL	9	Unmodified	_DTMLVNYSL_					0	0	0			REV__STKLD1|p.S178Y|1|0.09|ENSG00000198870|chr9:133390746-133390746|C/A|missense_variant	REV__STKLD1|p.S178Y|1|0.09|ENSG00000198870|chr9:133390746-133390746|C/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.3056640625	2	528.257525	1054.5005	-1.5707	-0.00082974	3.0916	0.0016331	1.5208	0.0008034	528.7601914653065	50.967	1.4146	47.793	47.412	48.826	-3.1734					46	27	2	0	0	0	0.027447	1	2930	2930		47.657	24.135	1	82911	+		5476	29462	4361	4370	6678	6678					-0.024573157652639566
DTPFRVIEN	9	Unmodified	_DTPFRVIEN_					0	0	0			REV__nc|ENSG00000005381|P05164-2|MPO	REV__nc|ENSG00000005381|P05164-2|MPO	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.8219604492188	2	545.780013	1089.54547	0.027117	1.48E-05	1.999	0.001091	2.0261	0.0011058	545.7808544981826	90	1.067	87.424	87.298	88.365	-2.575					26	20	2	0	0	0	0.027446	1	7774	7774		60.118	5.3419	1	182690	+		5477	16400	4362	4371	6679	6679					0.0042825109228488145
DTPMLSALDLF	11	Unmodified	_DTPMLSALDLF_					0	0	0			REV__nc|ENSG00000132259|Q8IV77-2|CNGA4	REV__nc|ENSG00000132259|Q8IV77-2|CNGA4	MULTI-MSMS	OvCa99_classI_Rep5	1	611.805419921875	2	611.804839	1221.59513	1.2148	0.0007432	-0.54838	-0.0003355	0.6664	0.0004077	611.8038335228013	154.63	0.65627	154.63	154.32	154.98	0					30	12	3	0	0	0	0.67529	1	18123	18123		37.812	2.6595	1	216880	+		5478	19062	4363	4372	6680	6680					-0.00680802013948778
DTPSSQQL	8	Unmodified	_DTPSSQQL_					0	0	0			REV__ENSG00000170396|ENST00000302277|ZNF804A	REV__ENSG00000170396|ENST00000302277|ZNF804A	MULTI-MSMS	OvCa99_classI_Rep5	1	438.21051025390625	2	438.208889	874.403226	0.86637	0.00037965	0.41906	0.00018364	1.2854	0.00056329	438.20894408173257	56.532	1.2611	56.532	56.261	57.522	0					62	29	4	0	0	0	0.38598	1	4693	4693		90.777	5.8611	1	2920500	+		5479	21537	4364	4373	6681	6681					-0.03899961649881334
DTQDRGRFCV	10	Carbamidomethyl (C)	_DTQDRGRFC(Carbamidomethyl (C))V_	DTQDRGRFC(1)V		DTQDRGRFC(56)V		0	1	0		ENST00000415992.5_1_9:139700881-139702361:+|nuORF	ENST00000415992.5_1_9:139700881-139702361:+|nuORF	ENST00000415992.5_1_9:139700881-139702361:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	627.2922973632812	2	627.288211	1252.56187	2.701	0.0016943	4.2883	0.00269	6.9893	0.0043843	627.2907955602681	116.16	0.91087	116.16	115.77	116.68	0					54	19	3	0	0	0	0.48398	1	13285	13285		56.434	6.8977	1	3470600			5480	11599	4365	4374	6682	6682	122				-0.0543099101325879
DTQDRGRFCV	10	Carbamidomethyl (C)	_DTQDRGRFC(Carbamidomethyl (C))V_					0	1	0		ENST00000415992.5_1_9:139700881-139702361:+|nuORF	ENST00000415992.5_1_9:139700881-139702361:+|nuORF	ENST00000415992.5_1_9:139700881-139702361:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	627.288211	1252.56187	-1.4833	-0.00093048	6.3596	0.0039893	4.8762	0.0030588	627.2920289326966	116.01	1.534	115.89	115.44	116.97	-0.11777	-0.13445	0.00060535	NaN	56.434	74	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131560			5481	11599	4365	4374			122				-0.0543099101325879
DTQVKGNIK	9	Unmodified	_DTQVKGNIK_					0	0	0			REV__ENST00000419038.2_1_2:63870904-63871126:-|nuORF	REV__ENST00000419038.2_1_2:63870904-63871126:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.806640625	2	501.782556	1001.55056	-0.55101	-0.00027649	-2.2407	-0.0011243	-2.7917	-0.0014008	501.78116246993426	57.966	0.81009	54.622	54.189	54.999	-3.3449					35	15	4	0	0	0	0.027462	1	3832	3832		40.778	9.2484	1	273870	+		5482	25580	4366	4375	6683	6683					0.04984554954921805
DTQVKGNIK	9	Unmodified	_DTQVKGNIK_					0	0	0			REV__ENST00000419038.2_1_2:63870904-63871126:-|nuORF	REV__ENST00000419038.2_1_2:63870904-63871126:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	501.782556	1001.55056	-1.218	-0.00061118	-0.68233	-0.00034238	-1.9003	-0.00095355	501.78187638723495	57.397	0.69426	54.605	54.178	54.873	-2.792	-0.0080285	0.00083036	NaN	45.972	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51170	+		5483	25580	4366	4375							0.04984554954921805
DTSDKTEI	8	Unmodified	_DTSDKTEI_					0	0	0			REV__nc|ENSG00000147526|O75410-7|TACC1	REV__nc|ENSG00000147526|O75410-7|TACC1	MULTI-MSMS	OvCa99_classI_Rep5	1	454.7136535644531	2	454.714005	907.413456	-0.82305	-0.00037425	0.96132	0.00043712	0.13827	6.2871E-05	454.7143445656673	34.748	0.5131	34.748	34.539	35.052	0					19	10	2	0	0	0	0.61436	1	1706	1706		60.972	0.67798	1	294080	+		5484	20070	4367	4376	6684	6684					-0.04395398715325882
DTSKIEAAI	9	Unmodified	_DTSKIEAAI_					0	0	0		ENSG00000115364|ENST00000393909|MRPL19	ENSG00000115364|ENST00000393909|MRPL19	ENSG00000115364|ENST00000393909|MRPL19	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.256591796875	2	474.25584	946.497126	0.656	0.00031111	-0.94884	-0.00044999	-0.29283	-0.00013888	474.25516845466626	61.757	1.934	58.299	57.516	59.45	-3.4577					80	39	5	0	0	0	0.31747	1	4271	4271		60.972	0	1	811690			5485	3090	4368	4377	6685	6685					0.02173757452362679
DTSNVPYGEKT	11	Unmodified	_DTSNVPYGEKT_					0	0	0		tr|A0A553SQG0|A0A553SQG0_NIACIGlutamateracemaseOS=NialliacirculansOX=1397GN=murIPE=3SV=1	tr|A0A553SQG0|A0A553SQG0_NIACIGlutamateracemaseOS=NialliacirculansOX=1397GN=murIPE=3SV=1	tr|A0A553SQG0|A0A553SQG0_NIACIGlutamateracemaseOS=NialliacirculansOX=1397GN=murIPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.2197265625	3	404.191059	1209.55135	3.8521	0.001557	-0.44185	-0.00017859	3.4103	0.0013784	404.1910001647848	90.44	0.23482	90.44	90.269	90.504	0					7	5	2	0	0	0	0.025594	1	9684	9684		18.966	4.2727	1	360440			5486	34155	4369	4378	6686	6686					-0.045046951867107055
DTSVGLEMSL	10	Unmodified	_DTSVGLEMSL_					0	0	0			REV__ENSG00000167548|ENST00000301067|KMT2D	REV__ENSG00000167548|ENST00000301067|KMT2D	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.8080444335938	2	526.25244	1050.49033	-0.003638	-1.9145E-06	1.004	0.00052835	1.0003	0.00052644	526.2529232105272	67.32	0.82553	67.32	66.857	67.683	0					22	13	2	0	0	0	0.026891	1	6292	6292		31.53	0	1	516380	+		5487	21287	4370	4379	6687	6687					-0.03289923490501678
DTTEIKNF	8	Unmodified	_DTTEIKNF_					0	0	0			REV__tr|A0A553SQI3|A0A553SQI3_NIACIMobA/MobLproteindomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07765PE=3SV=1	REV__tr|A0A553SQI3|A0A553SQI3_NIACIMobA/MobLproteindomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07765PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.2745666503906	2	484.24019	966.465826	2.7871	0.0013496	3.4264	0.0016592	6.2134	0.0030088	484.2416830498313	99.192	0.53271	99.192	98.955	99.488	0					28	12	3	0	0	0	0.028476	1	10982	10982		50.025	12.996	1	1022700	+		5488	30633	4371	4380	6688	6688					-0.018748155817092993
DTTKSVYQV	9	Unmodified	_DTTKSVYQV_					0	0	0		ENST00000584470.5_1_18:225291-225414:-|nuORF;nc|ENSG00000079134|Q96FV9-2|THOC1	ENST00000584470.5_1_18:225291-225414:-|nuORF	ENST00000584470.5_1_18:225291-225414:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.7966918945312	2	520.766571	1039.51859	0.19348	0.00010076	-0.37896	-0.00019735	-0.18548	-9.6593E-05	520.7664985961329	79.609	1.885	77.269	76.952	78.837	-2.3399					56	36	2	0	0	0	0.027462	1	4368	4368		39.253	0	1	82118			5489	14018	4372	4381	6689	6689					0.0004114248110909102
DTTREIVMT	9	Unmodified	_DTTREIVMT_					0	0	0		nc|ENSG00000243063|A0A075B6H7|IGKV3-7	nc|ENSG00000243063|A0A075B6H7|IGKV3-7	nc|ENSG00000243063|A0A075B6H7|IGKV3-7	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.2835693359375	2	533.265881	1064.51721	0.71357	0.00038052	-2.8952	-0.0015439	-2.1817	-0.0011634	533.2661253910222	81.114	0.37734	81.114	80.91	81.288	0					11	8	2	0	0	0	0.027433	1	8344	8344		64.207	5.4253	1	124420			5490	15341	4373	4382	6690	6690					-0.01246814879300473
DTVSILKLL	9	Unmodified	_DTVSILKLL_					0	0	0		ENST00000169298.7_1_3:186794199-186794490:+|nuORF	ENST00000169298.7_1_3:186794199-186794490:+|nuORF	ENST00000169298.7_1_3:186794199-186794490:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.7949523925781	2	501.3157	1000.61685	0.36695	0.00018396	-4.4276	-0.0022196	-4.0607	-0.0020357	501.31318195009413	110.04	0.63175	108.44	108.17	108.81	-1.6011					18	11	2	0	0	0	0.027433	1	10145	10145		51.335	0	1	22005			5491	9640	4374	4383	6691	6691					0.11656370796947613
DTVSILKLL	9	Unmodified	_DTVSILKLL_					0	0	0		ENST00000169298.7_1_3:186794199-186794490:+|nuORF	ENST00000169298.7_1_3:186794199-186794490:+|nuORF	ENST00000169298.7_1_3:186794199-186794490:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	501.3157	1000.61685	1.7768	0.00089073	-0.59267	-0.00029711	1.1841	0.00059362	501.3152991643012	108.69	0.78323	108.69	108.41	109.19	0	0.1271	0.00057401	NaN	51.335	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	376790			5492	9640	4374	4383							0.11656370796947613
DTVTKREGQ	9	Unmodified	_DTVTKREGQ_					0	0	0			REV__nc|ENSG00000173611|Q8N9R8-2|SCAI	REV__nc|ENSG00000173611|Q8N9R8-2|SCAI	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.264404296875	2	517.26727	1032.51999	-0.099176	-5.13E-05	0.16674	8.6251E-05	0.067568	3.4951E-05	517.2671442396913	47.87	1.4199	44.763	44.237	45.657	-3.1077					85	27	5	0	0	0	0.46356	1	2614	2614		45.972	3.108	1	452750	+		5493	29009	4375	4384	6692	6692					0.005027765698514486
DTVTLFTL	8	Unmodified	_DTVTLFTL_					0	0	0			REV__ENSG00000146411|ENST00000275230|SLC2A12	REV__ENSG00000146411|ENST00000275230|SLC2A12	MULTI-SECPEP	OvCa9_classI_Rep4_	4	454.25323486328125	2	455.250026	908.485499	0.61968	0.00028211	-4.0281	-0.0018338	-3.4084	-0.0015517	455.24803061676573	38.637	0.19794	35.71	35.601	35.799	-2.9264					5	3	2	0	0	0	0.028476	1	1509	1509		24.203	0	1	7071.6	+		5494	20016	4376	4385	6693	6693					0.027595604290468145
DTVVKLHDG	9	Unmodified	_DTVVKLHDG_					0	0	0			REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.8180236816406	2	492.261456	982.50836	-0.17305	-8.5186E-05	0.95209	0.00046867	0.77904	0.00038349	492.26176584449047	30.955	0.34431	30.955	30.731	31.076	0					8	6	2	0	0	0	0.027462	1	1242	1242		14.137	0	1	47464	+		5495	20275	4377	4386	6694	6694					0.016405795465288975
DTWKSFKPRYK	11	Unmodified	_DTWKSFKPRYK_					0	0	0		ENSG00000162551|ENST00000374840|ALPL;nc|ENSG00000162551|P05186-2|ALPL;nc|ENSG00000162551|P05186-3|ALPL	ENSG00000162551|ENST00000374840|ALPL	ENSG00000162551|ENST00000374840|ALPL	MULTI-SECPEP	OvCa9_classI_Rep2	2	485.2369384765625	3	485.929621	1454.76703	-0.71684	-0.00034834	-3.385	-0.0016449	-4.1018	-0.0019932	485.9283213618073	56.486	1.1406	53.682	53.225	54.366	-2.804					46	22	3	0	0	0	0.026024	1	3994	3994		25.068	0	1	104800			5496	6192	4378	4387	6695	6695					0.057841107886133614
DTYRLKIK	8	Unmodified	_DTYRLKIK_					0	0	0		L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|62|2|sense	L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|62|2|sense	L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|62|2|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	518.809326171875	2	518.811116	1035.60768	-0.049483	-2.5672E-05	-1.1441	-0.00059357	-1.1936	-0.00061924	518.8105741700431	88.52	3.827	86.389	85.803	89.63	-2.1309					168	75	5	0	0	0	0.6962	1	5449	5449		44.117	3.3386	1	8533700			5497	14760	4379	4388	6696	6696					0.09130022231261137
DVAASVYKH	9	Unmodified	_DVAASVYKH_					0	0	0		tr|A0A553SP30|A0A553SP30_NIACIFlagellarmotorswitchproteinFliGOS=NialliacirculansOX=1397GN=fliGPE=3SV=1	tr|A0A553SP30|A0A553SP30_NIACIFlagellarmotorswitchproteinFliGOS=NialliacirculansOX=1397GN=fliGPE=3SV=1	tr|A0A553SP30|A0A553SP30_NIACIFlagellarmotorswitchproteinFliGOS=NialliacirculansOX=1397GN=fliGPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	494.2919616699219	2	495.256174	988.497795	0.28033	0.00013884	-2.9921	-0.0014819	-2.7118	-0.001343	495.2558494856176	106.28	1.3234	105.02	104.49	105.81	-1.267					40	25	3	0	0	0	0.027462	1	7562	7562		24.203	0	1	59162			5498	33996	4380	4389	6697	6697					0.0030859689210274155
DVACIDAKNET	11	Unmodified	_DVACIDAKNET_					0	0	0			REV__APC|p.S2449Yfs*25|1|0.1|ENSG00000134982|chr5:112842938-112842939|-/TACTTCAGAAACAATCCACTTTTCCCCAGTC|frameshift_variant	REV__APC|p.S2449Yfs*25|1|0.1|ENSG00000134982|chr5:112842938-112842939|-/TACTTCAGAAACAATCCACTTTTCCCCAGTC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.3370361328125	2	589.771528	1177.5285	1.3467	0.00079423	0.28016	0.00016523	1.6268	0.00095946	589.7713390960691	146.85	0.93048	146.85	146.43	147.36	0					45	18	4	0	0	0	0.025656	1	17197	17197		32.751	13.647	1	97836	+		5499	15647	4381	4390	6698	6698					-0.0531603757585799
DVAELKMGVQF	11	Unmodified	_DVAELKMGVQF_					0	0	0			REV__nc|ENSG00000154655|Q8NA19-2|L3MBTL4	REV__nc|ENSG00000154655|Q8NA19-2|L3MBTL4	MULTI-MSMS	OvCa99_classI_Rep5	1	618.820068359375	2	618.818281	1235.62201	0.91929	0.00056887	-1.2435	-0.0007695	-0.32421	-0.00020063	618.817489083801	142.93	2.1583	142.93	142.49	144.64	0					116	43	5	0	0	0	0.5466	1	16676	16676		49.536	5.1589	1	3336600	+		5500	20392	4382	4391	6699	6699					0.013623065972524273
DVAELLTSL	9	Unmodified	_DVAELLTSL_					0	0	0		ENSG00000064687|ENST00000263094|ABCA7;ABCA7|p.M153I|1|0.5|ENSG00000064687|chr19:1042358-1042358|G/A|missense_variant;ENST00000526885.5_1_19:1041282-1042570:+|nuORF	ENSG00000064687|ENST00000263094|ABCA7	ENSG00000064687|ENST00000263094|ABCA7	MULTI-MSMS	OvCa9_classI_Rep2	2	480.7668762207031	2	480.76604	959.517527	-1.3373	-0.00064294	2.5663	0.0012338	1.229	0.00059085	480.7671509238754	54.147	1.2965	51.333	50.825	52.122	-2.8139					48	25	2	0	0	0	0.18193	1	3707	3707		79.451	0	1	272510			5501	1303	4383	4392	6700	6700					0.036149281121993226
DVAELLTSL	9	Unmodified	_DVAELLTSL_					0	0	0		ENSG00000064687|ENST00000263094|ABCA7;ABCA7|p.M153I|1|0.5|ENSG00000064687|chr19:1042358-1042358|G/A|missense_variant;ENST00000526885.5_1_19:1041282-1042570:+|nuORF	ENSG00000064687|ENST00000263094|ABCA7	ENSG00000064687|ENST00000263094|ABCA7	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.7685241699219	2	480.76604	959.517527	-0.97225	-0.00046743	1.8845	0.00090601	0.91227	0.00043859	480.76685826741743	54.507	1.0255	51.259	50.927	51.953	-3.2474					37	19	2	0	0	0	0.16524	1	3380	3380		82.305	4.3612	1	768700			5502	1303	4383	4392	6701	6701					0.036149281121993226
DVAFYRRA	8	Unmodified	_DVAFYRRA_					0	0	0		tr|A0A553SGR2|A0A553SGR2_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11340PE=4SV=1	tr|A0A553SGR2|A0A553SGR2_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11340PE=4SV=1	tr|A0A553SGR2|A0A553SGR2_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11340PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.28375244140625	2	499.264333	996.514114	-0.49773	-0.0002485	-0.51386	-0.00025655	-1.0116	-0.00050505	499.7672236770989	55.812	0.61386	55.812	55.48	56.094	0					32	14	3	0	0	0	0.028476	1	4574	4574		37.159	10.363	1	838440			5503	33184	4384	4393	6702	6702					0.015717228488369983
DVAIDTIVVT	10	Unmodified	_DVAIDTIVVT_					0	0	0			REV__ENSG00000007001|ENST00000005756|UPP2	REV__ENSG00000007001|ENST00000005756|UPP2	MULTI-SECPEP	OvCa9_classI_Rep3	3	522.8247680664062	2	523.292422	1044.57029	-1.0641	-0.00055684	-1.5052	-0.00078768	-2.5693	-0.0013445	523.2898557595985	82.291	1.397	79.994	79.083	80.48	-2.2963					50	27	3	0	0	0	0.027716	1	4545	4545		64.207	0	1	147490	+		5504	16427	4385	4394	6703	6703					0.04978886175013031
DVALACARVL	10	Unmodified	_DVALACARVL_					0	0	0		nc|ENSG00000227059|E9PGG2|ANHX;ENSG00000227059|ENST00000545940|ANHX	nc|ENSG00000227059|E9PGG2|ANHX	nc|ENSG00000227059|E9PGG2|ANHX	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7929077148438	2	515.789327	1029.5641	-0.90446	-0.00046651	2.2492	0.0011601	1.3448	0.00069362	515.7927149545123	93.41	2.0609	90.902	90.01	92.071	-2.5072					115	42	4	0	0	0	0.5675	1	8184	8184		45.972	3.5761	1	273020			5505	9276	4386	4395	6704	6704					0.050500894624974535
DVALARAIA	9	Unmodified	_DVALARAIA_					0	0	0			REV__tr|A0A7D7AC87|A0A7D7AC87_9CLOTSulfate/molybdateABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18245PE=4SV=1	REV__tr|A0A7D7AC87|A0A7D7AC87_9CLOTSulfate/molybdateABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18245PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.2701110839844	2	450.269084	898.523616	0.66588	0.00029983	-1.2562	-0.00056561	-0.59027	-0.00026578	450.2683337986321	61.743	3.9648	58.286	57.567	61.531	-3.4577					187	81	5	0	0	0	0.31747	1	4285	4285		60.972	2.19	1	30469000	+		5506	32686	4387	4396	6705	6705					0.07029491134369437
DVALSMPLPP	10	Unmodified	_DVALSMPLPP_					0	0	0			REV__ENSG00000173546|ENST00000308508|CSPG4	REV__ENSG00000173546|ENST00000308508|CSPG4	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.7667846679688	2	520.27826	1038.54197	-0.3443	-0.00017913	-2.5053	-0.0013035	-2.8496	-0.0014826	520.2760809268777	76.346	0.263	74.492	74.308	74.571	-1.854					6	4	2	0	0	0	0.026688	1	6310	6310		32.812	8.6097	1	8637	+		5507	21782	4388	4397	6706	6706					0.024238649940798496
DVANEIIDL	9	Unmodified	_DVANEIIDL_					0	0	0			REV__nc|ENSG00000196935|Q7Z6B7-2|SRGAP1;REV__SRGAP1|p.V1061Ffs*17|1|0.04|ENSG00000196935|chr12:64142593-64142594|-/CTTTGTAGGGACATGGATGAAAT|frameshift_variant	REV__nc|ENSG00000196935|Q7Z6B7-2|SRGAP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.3053894042969	2	501.261122	1000.50769	0.65777	0.00032972	-0.2297	-0.00011514	0.42807	0.00021458	501.2604591530168	96.897	0.79665	94.471	94.067	94.863	-2.4256					29	15	3	0	0	0	0.027411	1	8559	8559		74.255	15.473	1	28932	+		5508	22877;29452	4389	4398	6707	6707					0.007457401068336367
DVANKIGII	9	Unmodified	_DVANKIGII_					0	0	0		ENSG00000198242|ENST00000422514|RPL23A;ENST00000471152.1_2_3:161146917-161147007:-|nuORF;ENST00000467573.1_1_21:40499576-40499963:+|nuORF;ENST00000498752.1_1_11:43740306-43740693:+|nuORF	ENSG00000198242|ENST00000422514|RPL23A;ENST00000498752.1_1_11:43740306-43740693:+|nuORF	ENSG00000198242|ENST00000422514|RPL23A	MULTI-MSMS	OvCa99_classI_Rep5	1	471.785400390625	2	471.784567	941.554582	2.6815	0.0012651	-0.045248	-2.1347E-05	2.6362	0.0012437	471.7841867282502	96.456	0.45648	96.456	96.338	96.795	0					21	10	3	0	0	0	0.14855	1	10568	10568		85.161	10.644	1	521480			5509	8800;12833	4390	4399	6708	6708					0.08146644448606821
DVCKKAPCKT	10	Unmodified	_DVCKKAPCKT_					0	0	0		ENST00000573090.1_1_17:79213604-79214950:+|nuORF	ENST00000573090.1_1_17:79213604-79214950:+|nuORF	ENST00000573090.1_1_17:79213604-79214950:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	546.7808227539062	2	546.780644	1091.54674	1.7328	0.00094749	3.8698	0.0021159	5.6026	0.0030634	546.7827986840668	122.52	0.63942	122.52	122.27	122.91	0					35	13	4	0	0	0	0.53807	1	14091	14091		49.536	0.094497	1	637730			5510	13915	4391	4400	6709	6709					0.004624258651574564
DVDEPDLLRTV	11	Unmodified	_DVDEPDLLRTV_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	OvCa9_classI_Rep3	3	636.3285522460938	2	636.327524	1270.6405	-0.38295	-0.00024368	1.4276	0.0009084	1.0446	0.00066472	636.3283806206185	88.113	1.1978	85.982	85.648	86.846	-2.1309					67	23	5	0	0	0	0.56391	1	5336	5336		47.96	0.30219	1	538280	+		5511	22051	4392	4401	6710	6710					0.016001397727904987
DVDGEQLAI	9	Unmodified	_DVDGEQLAI_					0	0	0			REV__nc|ENSG00000066032|P26232-4|CTNNA2	REV__nc|ENSG00000066032|P26232-4|CTNNA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2747497558594	2	480.237647	958.460741	2.0151	0.00096773	2.4296	0.0011668	4.4447	0.0021345	480.2387109306944	78.054	0.37018	78.054	77.924	78.294	0					12	8	2	0	0	0	0.027403	1	7897	7897		72.879	4.0924	1	216750	+		5512	16807	4393	4402	6711	6711					-0.020151194443315035
DVDHAAAALL	10	Unmodified	_DVDHAAAALL_					0	0	0			REV__ENSG00000171408|ENST00000308191|PDE7B	REV__ENSG00000171408|ENST00000308191|PDE7B	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.2617492675781	2	498.261456	994.50836	-0.23351	-0.00011635	-0.5577	-0.00027788	-0.79121	-0.00039423	498.2610994272217	78.826	1.4654	76.075	75.714	77.179	-2.7514					62	30	3	0	0	0	0.28791	1	6363	6363		82.305	2.854	1	917230	+		5513	21611	4394	4403	6712	6712					0.010885795465128467
DVDHAAAALL	10	Unmodified	_DVDHAAAALL_					0	0	0			REV__ENSG00000171408|ENST00000308191|PDE7B	REV__ENSG00000171408|ENST00000308191|PDE7B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	498.261456	994.50836	-0.37019	-0.00018445	4.5662	0.0022752	4.1961	0.0020907	498.2614189226149	78.058	1.479	76.269	75.519	76.998	-1.7894	0.096932	0.0048332	NaN	82.305	131	28	7	NaN	NaN	NaN	NaN	0				NaN	NaN	0	306010	+		5514	21611	4394	4403							0.010885795465128467
DVDIAVVT	8	Unmodified	_DVDIAVVT_					0	0	0			REV__ENSG00000187773|ENST00000343998|DIPK1C	REV__ENSG00000187773|ENST00000343998|DIPK1C	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.69464111328125	2	416.226551	830.438549	-0.20357	-8.4731E-05	3.5205	0.0014653	3.3169	0.0013806	416.2282633041679	49.98	0.95828	49.98	49.507	50.465	0					28	21	2	0	0	0	0.028476	1	3703	3703		37.159	0	1	151450	+		5515	22661	4395	4404	6713	6713					0.01654700877918458
DVDIGILVGG	10	Unmodified	_DVDIGILVGG_					0	0	0			REV__tr|A0A553SS29|A0A553SS29_NIACIUrocanatehydrataseOS=NialliacirculansOX=1397GN=hutUPE=3SV=1	REV__tr|A0A553SS29|A0A553SS29_NIACIUrocanatehydrataseOS=NialliacirculansOX=1397GN=hutUPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.2843017578125	2	479.266207	956.517862	2.5854	0.0012391	0.12554	6.0169E-05	2.7109	0.0012993	479.26600661193214	75.977	0.31391	75.977	75.801	76.115	0					11	7	2	0	0	0	0.027513	1	7591	7591		79.451	0	1	290590	+		5516	30795	4396	4405	6714	6714					0.037863478320673494
DVDKIMGLN	9	Unmodified	_DVDKIMGLN_					0	0	0		tr|A0A7D6VXM5|A0A7D6VXM5_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_12620PE=4SV=1	tr|A0A7D6VXM5|A0A7D6VXM5_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_12620PE=4SV=1	tr|A0A7D6VXM5|A0A7D6VXM5_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_12620PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.75994873046875	2	502.757692	1003.50083	0.34602	0.00017397	-3.9641	-0.001993	-3.6181	-0.001819	502.755745991433	73.942	0.38428	73.942	73.792	74.176	0					13	9	2	0	0	0	0.027418	1	7314	7314		49.442	23.867	1	306850			5517	35290	4397	4406	6715	6715					-0.0007789604541130757
DVDLDGRPE	9	Unmodified	_DVDLDGRPE_					0	0	0		nc|ENSG00000118162|Q9Y664-2|KPTN;ENSG00000118162|ENST00000338134|KPTN	nc|ENSG00000118162|Q9Y664-2|KPTN	nc|ENSG00000118162|Q9Y664-2|KPTN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.2906188964844	2	508.238178	1014.4618	-0.6564	-0.00033361	-0.78734	-0.00040016	-1.4437	-0.00073377	508.23828413746827	117.13	1.5717	115.77	115.14	116.71	-1.3645					40	29	4	0	0	0	0.027441	1	10899	10899		45.952	0	1	32346			5518	3292	4398	4407	6716	6716					-0.044849050754237396
DVEAKPKLAKL	11	Unmodified	_DVEAKPKLAKL_					0	0	0			REV__ENSG00000204301|ENST00000375023|NOTCH4	REV__ENSG00000204301|ENST00000375023|NOTCH4	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3693237304688	2	606.371538	1210.72852	-3.14	-0.001904	-0.05994	-3.6346E-05	-3.1999	-0.0019404	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.72479	1	14879	14879		18.262	2.6203	1	257720	+		5519	23140	4399	4408	6717	6717					0.13158805154080255
DVEAKSCTAH	10	Unmodified	_DVEAKSCTAH_					0	0	0			REV__PDE11A|p.D619Sfs*16|1|0.06|ENSG00000128655|chr2:177728087-177728106|GTGATCATGGCATCAACGTC/-|frameshift_variant	REV__PDE11A|p.D619Sfs*16|1|0.06|ENSG00000128655|chr2:177728087-177728106|GTGATCATGGCATCAACGTC/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	531.3027954101562	2	530.740031	1059.46551	1.4006	0.00074334	2.7581	0.0014638	4.1587	0.0022072	531.2421833149955	121.93	0.52323	120.9	120.74	121.27	-1.0286					11	9	2	0	0	0	0.026653	1	9389	9389		41.427	17.224	1	13006	+		5520	18866	4400	4409	6718	6718					-0.0618455857322715
DVEDLRIK	8	Unmodified	_DVEDLRIK_					0	0	0			REV__ENSG00000203697|ENST00000366872|CAPN8	REV__ENSG00000203697|ENST00000366872|CAPN8	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.3222961425781	2	494.277106	986.53966	0.5966	0.00029488	-1.0359	-0.00051202	-0.43931	-0.00021714	494.2763579343264	79.472	0.93268	77.732	77.048	77.981	-1.7398					45	17	3	0	0	0	0.028476	1	6645	6645		45.952	0	1	94966	+		5521	23107	4401	4410	6719	6719					0.0458515258060288
DVEDRINIF	9	Unmodified	_DVEDRINIF_					0	0	0		tr|A0A7D6VNB2|A0A7D6VNB2_9CLOTFapAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17085PE=4SV=1	tr|A0A7D6VNB2|A0A7D6VNB2_9CLOTFapAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17085PE=4SV=1	tr|A0A7D6VNB2|A0A7D6VNB2_9CLOTFapAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17085PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.8065795898438	2	560.785296	1119.55604	2.2071	0.0012377	2.0064	0.0011252	4.2135	0.0023629	560.7860254277066	127.05	0.45055	127.05	126.73	127.18	0					12	9	2	0	0	0	0.027462	1	14704	14704		37.159	0	1	239420			5522	34689	4402	4411	6720	6720					0.0010423374669699115
DVEDYYPAFLD	11	Unmodified	_DVEDYYPAFLD_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-SECPEP	OvCa99_classI_Rep5	1	449.28656005859375	3	449.531081	1345.57141	0.47342	0.00021282	3.3607	0.0015108	3.8342	0.0017236	449.5324617739649	52.921	0.21463	52.921	52.784	52.999	0					6	4	2	0	0	0	0.025864	1	4180	4180		22.562	0	1	61234			5523	7004	4403	4412	6721	6721					-0.08754944246766172
DVEIELKR	8	Unmodified	_DVEIELKR_					0	0	0		nc|ENSG00000173011|Q86TJ2-3|TADA2B;nc|ENSG00000173011|Q86TJ2-2|TADA2B;ENSG00000173011|ENST00000310074|TADA2B	nc|ENSG00000173011|Q86TJ2-3|TADA2B	nc|ENSG00000173011|Q86TJ2-3|TADA2B	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.30474853515625	2	501.284931	1000.55531	-0.96934	-0.00048592	1.216	0.00060957	0.24667	0.00012365	501.2852832805182	94.446	1.2088	92.55	92.102	93.311	-1.8956					52	23	4	0	0	0	0.028476	1	6127	6127		38.806	0	1	186760			5524	7341	4404	4413	6722	6722					0.05505439097669296
DVEKRNAR	8	Unmodified	_DVEKRNAR_					0	0	0		ENSG00000159086|ENST00000331923|PAXBP1;ENST00000497873.1_1_21:34107263-34123563:-|nuORF	ENSG00000159086|ENST00000331923|PAXBP1	ENSG00000159086|ENST00000331923|PAXBP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.3236999511719	2	494.270147	986.525741	0.67837	0.0003353	1.6333	0.00080727	2.3116	0.0011426	494.2706789785142	79.949	1.4479	78.254	77.871	79.318	-1.6951					49	28	2	0	0	0	0.028476	1	6721	6721		18.324	0	1	64463			5525	5986	4405	4414	6723	6723					0.0319391987218296
DVEKSLLEI	9	Unmodified	_DVEKSLLEI_					0	0	0			REV__tr|A0A553SHF1|A0A553SHF1_NIACIDihydropteroatesynthaseOS=NialliacirculansOX=1397GN=folPPE=3SV=1	REV__tr|A0A553SHF1|A0A553SHF1_NIACIDihydropteroatesynthaseOS=NialliacirculansOX=1397GN=folPPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	523.29052734375	2	523.292422	1044.57029	-2.7103	-0.0014183	2.8048	0.0014677	0.094546	4.9475E-05	523.2937325019216	142.01	1.2384	141	140.73	141.97	-1.0106					63	24	3	0	0	0	0.1804	1	11775	11775		79.713	5.4575	1	67260	+		5526	29795	4406	4415	6724	6724					0.04978886175013031
DVEKVKKLI	9	Unmodified	_DVEKVKKLI_					0	0	0		ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B;nc|ENSG00000204084|P32019-3|INPP5B;nc|ENSG00000204084|P32019-4|INPP5B	ENSG00000204084|ENST00000373024|INPP5B	ENSG00000204084|ENST00000373024|INPP5B	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.2913208007812	2	536.342249	1070.66995	0.21721	0.0001165	-0.23662	-0.00012691	-0.01941	-1.041E-05	536.3421152747519	129.28	0.6423	129.05	128.87	129.51	-0.22697					19	12	2	0	0	0	0.027462	1	12721	12721		39.253	6.4404	1	19095			5527	8946	4407	4416	6725	6725					0.1374374857962266
DVELERIL	8	Unmodified	_DVELERIL_					0	0	0		RICTOR|p.L1512Tfs*4|1|0.3|ENSG00000164327|chr5:38945587-38945594|GTAGTCCA/-|frameshift_variant;ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR;ENST00000510711.5_1_5:38971963-39074479:-|nuORF	RICTOR|p.L1512Tfs*4|1|0.3|ENSG00000164327|chr5:38945587-38945594|GTAGTCCA/-|frameshift_variant	RICTOR|p.L1512Tfs*4|1|0.3|ENSG00000164327|chr5:38945587-38945594|GTAGTCCA/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.3055114746094	2	493.779482	985.544411	0.74452	0.00036763	-1.4124	-0.00069739	-0.66783	-0.00032976	493.7788234210316	114.45	2.0357	113.05	112.58	114.61	-1.3977					75	39	3	0	0	0	0.028476	1	10742	10742		45.952	15.448	1	113190			5528	6447	4408	4417	6726	6726					0.05106036723384477
DVELLIYY	8	Unmodified	_DVELLIYY_					0	0	0		VWA5A|p.P249Sfs*2|1|0.18|ENSG00000110002|chr11:124119073-124119074|-/T|frameshift_variant;VWA5A|p.P249Hfs*11|1|0.17|ENSG00000110002|chr11:124119074-124119075|-/ATAAAAAGTGTTGGCAAGGAAAACAGAA|frameshift_variant;nc|ENSG00000110002|O00534-4|VWA5A;nc|ENSG00000110002|O00534-3|VWA5A;nc|ENSG00000110002|O00534-2|VWA5A;ENSG00000110002|ENST00000456829|VWA5A	VWA5A|p.P249Sfs*2|1|0.18|ENSG00000110002|chr11:124119073-124119074|-/T|frameshift_variant	VWA5A|p.P249Sfs*2|1|0.18|ENSG00000110002|chr11:124119073-124119074|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.2760620117188	2	514.270958	1026.52736	0.67463	0.00034694	1.21	0.00062226	1.8846	0.00096921	514.7735427892516	92.206	0.57985	90.97	90.799	91.378	-1.2355					15	10	2	0	0	0	0.028476	1	8221	8221		19.36	3.7182	1	26510			5529	2746	4409	4418	6727	6727					0.015161161175683446
DVEPTITGGKV	11	Unmodified	_DVEPTITGGKV_					0	0	0			REV__tr|A0A7D6VP54|A0A7D6VP54_9CLOT5'-nucleotidaseC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17410PE=4SV=1	REV__tr|A0A7D6VP54|A0A7D6VP54_9CLOT5'-nucleotidaseC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17410PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	558.2981567382812	2	558.300778	1114.587	2.7795	0.0015518	-3.0114	-0.0016813	-0.23188	-0.00012946	558.2991109211848	108.13	2.0948	108.13	107.9	110	0					107	47	3	0	0	0	0.5466	1	12277	12277		49.536	3.5638	1	33414000	+		5530	31230	4410	4419	6728	6728					0.03429387060964473
DVEQFWHERDT	11	Unmodified	_DVEQFWHERDT_					0	0	0		ENSG00000173250|ENST00000311104|GPR151	ENSG00000173250|ENST00000311104|GPR151	ENSG00000173250|ENST00000311104|GPR151	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.28265380859375	3	487.884629	1460.63206	-0.27664	-0.00013497	-1.3024	-0.00063543	-1.5791	-0.0007704	487.88347956097147	96.078	0.3027	93.653	93.559	93.862	-2.4256					7	5	2	0	0	0	0.026145	1	8481	8481		8.7993	0	1	17439			5531	7362	4411	4420	6729	6729					-0.07983414143814116
DVEQLLAVL	9	Unmodified	_DVEQLLAVL_					0	0	0			REV__ENSG00000189325|ENST00000437635|BNIP5	REV__ENSG00000189325|ENST00000437635|BNIP5	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.3147888183594	2	500.289682	998.564812	1.6949	0.00084794	0.67332	0.00033685	2.3682	0.0011848	500.2903683563745	125.97	0.42055	125.97	125.71	126.13	0					13	8	2	0	0	0	0.027462	1	14581	14581		37.159	3.6435	1	83337	+		5532	22772	4412	4421	6730	6730					0.06547207383187015
DVERFQKM	8	Unmodified	_DVERFQKM_					0	0	0		ENST00000592894.5_1_18:11886654-11897104:-|nuORF;nc|ENSG00000154889|Q53F39-5|MPPE1;ENST00000592447.5_1_18:11886825-11897263:-|nuORF;ENST00000589731.5_1_18:11886458-11897263:-|nuORF;nc|ENSG00000154889|Q53F39-4|MPPE1;nc|ENSG00000154889|Q53F39-2|MPPE1;nc|ENSG00000154889|Q53F39-3|MPPE1;ENSG00000154889|ENST00000588072|MPPE1	ENST00000592894.5_1_18:11886654-11897104:-|nuORF	ENST00000592894.5_1_18:11886654-11897104:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	527.2818603515625	2	526.763309	1051.51206	-1.4852	-0.00078234	-2.3905	-0.0012592	-3.8757	-0.0020416	527.2654447139213	77.159	0.93417	74.788	74.4	75.334	-2.3715					26	17	2	0	0	0	0.028476	1	3981	3981		30.504	13.139	1	23364			5533	5759	4413	4422	6731	6731					-0.011630739512838772
DVETLTQADGE	11	Unmodified	_DVETLTQADGE_					0	0	0			REV__ENST00000559814.5_1_15:29346087-29400775:+|nuORF	REV__ENST00000559814.5_1_15:29346087-29400775:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.2814331054688	2	589.26459	1176.51463	2.0761	0.0012234	1.0964	0.00064607	3.1725	0.0018694	589.2648742836453	87.681	0.41852	87.681	87.463	87.881	0					13	9	2	0	0	0	0.025528	1	9306	9306		28.081	9.8194	1	111200	+		5534	16595	4414	4423	6732	6732					-0.06656991803288292
DVEVLGPLR	9	Unmodified	_DVEVLGPLR_					0	0	0		nc|ENSG00000119946|Q9NRU3-2|CNNM1;ENSG00000119946|ENST00000356713|CNNM1	nc|ENSG00000119946|Q9NRU3-2|CNNM1	nc|ENSG00000119946|Q9NRU3-2|CNNM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.3432312011719	2	499.287474	996.560395	1.5095	0.00075367	1.5736	0.00078567	3.0831	0.0015393	499.2881612616065	138.25	0.82118	138.25	137.82	138.64	0					28	17	2	0	0	0	0.027462	1	16101	16101		11.511	1.8054	1	56972			5535	3407	4415	4424	6733	6733					0.06197742960284813
DVFGHFILI	9	Unmodified	_DVFGHFILI_					0	0	0		ENST00000494540.5_1_10:38645382-38658918:+|nuORF	ENST00000494540.5_1_10:38645382-38658918:+|nuORF	ENST00000494540.5_1_10:38645382-38658918:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	530.3080444335938	2	530.794935	1059.57532	-2.0438	-0.0010848	0.12761	6.7733E-05	-1.9162	-0.0010171	531.296600562213	117.81	0.24866	117.66	117.54	117.79	-0.14755					7	4	2	0	0	0	0.027462	1	11293	11293		38.806	0	1	6383.5			5536	12756	4416	4425	6734	6734					0.047912348282807216
DVFLVVNIV	9	Unmodified	_DVFLVVNIV_					0	0	0		ENSG00000139985|ENST00000603540|ADAM21;ENST00000529267.2_1_14:70712472-70713909:-|nuORF	ENSG00000139985|ENST00000603540|ADAM21	ENSG00000139985|ENST00000603540|ADAM21	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.7496032714844	2	509.302593	1016.59063	-1.0099	-0.00051434	-3.2844	-0.0016728	-4.2943	-0.0021871	509.30078742140626	43.612	0.47334	43.612	43.435	43.909	0					16	10	2	0	0	0	0.027441	1	2886	2886		45.952	0	1	199810			5537	4816	4417	4426	6735	6735					0.08300101625457046
DVFREAAKV	9	Unmodified	_DVFREAAKV_					0	0	0		ENSG00000139725|ENST00000267205|RHOF	ENSG00000139725|ENST00000267205|RHOF	ENSG00000139725|ENST00000267205|RHOF	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.294677734375	2	517.785099	1033.55564	0.81994	0.00042455	0.72454	0.00037516	1.5445	0.00079971	517.7851071106227	92.271	0.94566	91.103	90.657	91.603	-1.168					23	17	2	0	0	0	0.027462	1	8253	8253		13.454	0	1	54423			5538	4800	4418	4427	6736	6736					0.040208588175119075
DVFTDVEIF	9	Unmodified	_DVFTDVEIF_					0	0	0		ENST00000521468.1_1_8:124195447-124212099:+|nuORF;nc|ENSG00000147689|Q86UY5-3|FAM83A;ENSG00000147689|ENST00000690554|FAM83A	ENST00000521468.1_1_8:124195447-124212099:+|nuORF	ENST00000521468.1_1_8:124195447-124212099:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.7702026367188	2	542.763497	1083.51244	-2.724	-0.0014785	2.7371	0.0014856	0.013115	7.1183E-06	542.7650696039767	103.96	0.80843	103.96	103.73	104.54	0					35	18	3	0	0	0	0.027462	1	11624	11624		23.042	4.7181	1	729330			5539	5374	4419	4428	6737	6737					-0.025973757504289097
DVFVFSYSC	9	Unmodified	_DVFVFSYSC_					0	0	0		WDR55|p.M174Ifs*24|1|0.16|ENSG00000120314|chr5:140668753-140668754|GG/-|frameshift_variant;WDR55|p.V275Hfs*38|1|0.11|ENSG00000120314|chr5:140669239-140669240|GA/-|frameshift_variant;WDR55|p.S289Mfs*60|1|0.1|ENSG00000120314|chr5:140669368-140669368|G/-|frameshift_variant;ENSG00000120314|ENST00000358337|WDR55	WDR55|p.M174Ifs*24|1|0.16|ENSG00000120314|chr5:140668753-140668754|GG/-|frameshift_variant	WDR55|p.M174Ifs*24|1|0.16|ENSG00000120314|chr5:140668753-140668754|GG/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.2604370117188	2	533.731143	1065.44773	-2.4746	-0.0013208	0.84335	0.00045012	-1.6312	-0.00087064	533.7311151389415	108.7	0.6124	106.97	106.72	107.33	-1.7256					23	11	3	0	0	0	0.027462	1	9951	9951		45.952	21.433	1	26130			5540	3427	4420	4429	6738	6738					-0.08237273828058278
DVGCLGWWPL	10	Unmodified	_DVGCLGWWPL_					0	0	0		ENST00000511185.5_1_4:2814082-2826487:+|nuORF	ENST00000511185.5_1_4:2814082-2826487:+|nuORF	ENST00000511185.5_1_4:2814082-2826487:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.79345703125	2	573.276052	1144.53755	1.6954	0.00097194	1.2163	0.00069726	2.9117	0.0016692	573.77908890241	115.43	0.46588	115.43	115.16	115.63	0					24	9	4	0	0	0	0.026822	1	13199	13199		23.042	2.0956	1	96684			5541	12981	4421	4430	6739	6739					-0.02893599428853122
DVGGFIIQLI	10	Unmodified	_DVGGFIIQLI_					0	0	0			REV__nc|ENSG00000149452|Q8TCC7-3|SLC22A8	REV__nc|ENSG00000149452|Q8TCC7-3|SLC22A8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.8182373046875	2	537.813325	1073.6121	0.26011	0.00013989	-1.6651	-0.00089549	-1.4049	-0.0007556	538.3150023059766	68.082	0.68147	64.592	64.186	64.867	-3.4902					16	13	2	0	0	0	0.02661	1	5008	5008		49.442	24.922	1	45822	+		5542	20161	4422	4431	6740	6740					0.07823486654206135
DVGLMTGDVT	10	Unmodified	_DVGLMTGDVT_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.2705383300781	2	504.239332	1006.46411	1.1121	0.00056077	2.163	0.0010907	3.2751	0.0016514	504.2401427343081	91.101	0.39709	91.101	90.899	91.296	0					15	9	2	0	0	0	0.026553	1	9793	9793		39.253	0	1	155760			5543	1102	4423	4432	6741	6741					-0.03886192661968835
DVGRRFLVNRV	11	Unmodified	_DVGRRFLVNRV_					0	0	0		nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	MULTI-MSMS	OvCa9_classI_Rep3	3	444.2616271972656	3	444.261594	1329.76295	1.0353	0.00045994	-1.0181	-0.00045229	0.01722	7.6501E-06	444.261120650002	68.217	1.7987	65.402	64.962	66.761	-2.8144					71	35	4	0	0	0	0.71831	1	2949	2949		23.378	0	1	103760			5544	7114	4424	4433	6742	6742					0.11126066085557795
DVGTGKVSLKV	11	Unmodified	_DVGTGKVSLKV_					0	0	0			REV__tr|A0A553SGM6|A0A553SGM6_NIACIOrganichydroperoxideresistanceproteinOS=NialliacirculansOX=1397GN=CEQ21_11115PE=3SV=1	REV__tr|A0A553SGM6|A0A553SGM6_NIACIOrganichydroperoxideresistanceproteinOS=NialliacirculansOX=1397GN=CEQ21_11115PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.8032836914062	2	551.826963	1101.63937	-1.0545	-0.00058192	3.4173	0.0018858	2.3628	0.0013039	551.8281167453057	42.843	0.47175	39.835	39.591	40.063	-3.0074					10	8	2	0	0	0	0.025594	1	2006	2006		41.427	0	1	14689	+		5545	29720	4425	4434	6743	6743					0.09261970194575042
DVGYIIHSH	9	Unmodified	_DVGYIIHSH_					0	0	0			REV__tr|A0A7D6VTZ6|A0A7D6VTZ6_9CLOTprotein-tyrosine-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_18805PE=3SV=1	REV__tr|A0A7D6VTZ6|A0A7D6VTZ6_9CLOTprotein-tyrosine-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_18805PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3171997070312	2	520.761623	1039.50869	-0.40972	-0.00021337	-0.1084	-5.6451E-05	-0.51812	-0.00026982	520.7612511156286	57.773	1.3609	54.428	54.086	55.447	-3.3449					43	26	3	0	0	0	0.027462	1	3831	3831		29.15	8.2026	1	96812	+		5546	31640	4426	4435	6744	6744					-0.009480007336151175
DVHIIYEKFLR	11	Unmodified	_DVHIIYEKFLR_					0	0	0			REV__ENSG00000166833|ENST00000349880|NAV2	REV__ENSG00000166833|ENST00000349880|NAV2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.7366638183594	3	478.269755	1431.78744	-0.85172	-0.00040735	-2.6102	-0.0012484	-3.4619	-0.0016557	478.2684477124498	44.88	1.4959	41.841	41.362	42.858	-3.0385					66	28	3	0	0	0	0.026033	1	2248	2248		35.178	12.617	1	319180	+		5547	21225	4427	4436	6745	6745					0.08881281448407208
DVHIIYEKFLR	11	Unmodified	_DVHIIYEKFLR_					0	0	0			REV__ENSG00000166833|ENST00000349880|NAV2	REV__ENSG00000166833|ENST00000349880|NAV2	MULTI-MATCH	OvCa9_classI_Rep2	2		3	478.269755	1431.78744	-0.068062	-3.2552E-05	-3.6938	-0.0017667	-3.7619	-0.0017992	478.26786390819353	44.649	1.2443	41.939	41.653	42.897	-2.7097	0.04898	-0.00067021	NaN	35.178	63	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222190	+		5548	21225	4427	4436							0.08881281448407208
DVIAIVPFWG	10	Unmodified	_DVIAIVPFWG_					0	0	0			REV__L1PA7_dup9238|chr10:48372221-48377370:+|1.4943041569802586|0.2795461482764699|2.42|429.0|263|3|anti-sense	REV__L1PA7_dup9238|chr10:48372221-48377370:+|1.4943041569802586|0.2795461482764699|2.42|429.0|263|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	558.7903442382812	2	558.808042	1115.60153	-0.91288	-0.00051013	-2.182	-0.0012193	-3.0949	-0.0017294	559.3062096997919	126.82	0.44612	125.38	125.24	125.69	-1.4357					10	8	2	0	0	0	0.026939	1	12067	12067		31.955	0	1	4635.3	+		5549	28573	4428	4437	6746	6746					0.04835503999743196
DVIEVALG	8	Unmodified	_DVIEVALG_					0	0	0			REV__OTOF|p.Y1215Mfs*57|1|0.35|ENSG00000115155|chr2:26473222-26473223|-/CTCAT|frameshift_variant	REV__OTOF|p.Y1215Mfs*57|1|0.35|ENSG00000115155|chr2:26473222-26473223|-/CTCAT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.24774169921875	2	408.229094	814.443634	1.0733	0.00043815	-3.8689	-0.0015794	-2.7956	-0.0011413	408.22746599792697	30.555	0.39756	30.555	30.383	30.781	0					15	7	3	0	0	0	0.028476	1	1166	1166		14.664	0.88877	1	47865	+		5550	18221	4429	4438	6747	6747					0.02899004740527289
DVIFSSITIL	10	Unmodified	_DVIFSSITIL_					0	0	0		chr10:84102833-84171722|221|17.26|0.0|20.72|-|0|TE_info:LTR49-int,LTR49-int_dup1367,ERV1,LTR,acceptor,-,84101562,84102833|None,CERNA2|1	chr10:84102833-84171722|221|17.26|0.0|20.72|-|0|TE_info:LTR49-int,LTR49-int_dup1367,ERV1,LTR,acceptor,-,84101562,84102833|None,CERNA2|1	chr10:84102833-84171722|221|17.26|0.0|20.72|-|0|TE_info:LTR49-int,LTR49-int_dup1367,ERV1,LTR,acceptor,-,84101562,84102833|None,CERNA2|1	MULTI-MSMS	OvCa9_classI_Rep2	2	554.3191528320312	2	554.31844	1106.62233	-0.16637	-9.222E-05	-0.43438	-0.00024078	-0.60074	-0.000333	554.3181046507004	121.07	0.88916	120.88	120.65	121.54	-0.19718					28	17	2	0	0	0	0.3976	1	11689	11689		68.787	7.8149	1	87648			5551	280	4430	4439	6748	6748					0.07328049588772956
DVIIDVFVE	9	Unmodified	_DVIIDVFVE_					0	0	0			REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.7650146484375	2	524.78169	1047.54883	-0.63655	-0.00033405	-2.0158	-0.0010578	-2.6523	-0.0013919	524.780220979464	63.893	1.016	60.418	60.061	61.077	-3.475					36	20	2	0	0	0	0.027455	1	4585	4585		26.693	10.22	1	280530	+		5552	17113	4431	4440	6749	6749					0.02695501146308743
DVIIDVFVE	9	Unmodified	_DVIIDVFVE_					0	0	0			REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	524.78169	1047.54883	-0.60832	-0.00031924	-2.929	-0.0015371	-3.5373	-0.0018563	524.7807788783308	60.134	0.27535	60.134	60.039	60.314	0	-0.12493	-0.0020531	NaN	26.693	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112140	+		5553	17113	4431	4440							0.02695501146308743
DVIKMGRTQL	10	Unmodified	_DVIKMGRTQL_					0	0	0		tr|A0A7D6ZIV5|A0A7D6ZIV5_9CLOTAspartateammonia-lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08580PE=4SV=1	tr|A0A7D6ZIV5|A0A7D6ZIV5_9CLOTAspartateammonia-lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08580PE=4SV=1	tr|A0A7D6ZIV5|A0A7D6ZIV5_9CLOTAspartateammonia-lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08580PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.7870483398438	2	580.82644	1159.63833	1.2046	0.00069965	1.4284	0.00082963	2.6329	0.0015293	580.8277518210776	107.16	0.424	107.16	106.93	107.36	0					12	9	2	0	0	0	0.02676	1	12103	12103		27.047	6.1004	1	414580			5554	35626	4432	4441	6750	6750					0.06489432554030827
DVILIILSY	9	Unmodified	_DVILIILSY_					0	0	0		ENSG00000183269|ENST00000537935|OR52E8	ENSG00000183269|ENST00000537935|OR52E8	ENSG00000183269|ENST00000537935|OR52E8	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.7623901367188	2	524.818076	1047.6216	-0.59273	-0.00031108	-1.794	-0.00094153	-2.3867	-0.0012526	524.816927927829	64.045	1.3165	61.321	60.968	62.285	-2.7246					59	24	4	0	0	0	0.027462	1	4860	4860		23.042	0	1	245890			5555	8060	4433	4442	6751	6751					0.09969254939710481
DVILIKENAM	10	Unmodified	_DVILIKENAM_					0	0	0			REV__tr|A0A7D6VTA7|A0A7D6VTA7_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_09960PE=4SV=1	REV__tr|A0A7D6VTA7|A0A7D6VTA7_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_09960PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.6521606445312	2	573.315374	1144.6162	1.0883	0.00062394	1.1578	0.0006638	2.2461	0.0012877	573.3157735159137	132.84	0.42595	132.84	132.7	133.13	0					14	8	2	0	0	0	0.026665	1	15477	15477		26.693	0	1	69609	+		5556	31586	4434	4443	6752	6752					0.0496720808559985
DVILVILCTV	10	Unmodified	_DVILVILCTV_					0	0	0		ENSG00000198822|ENST00000361669|GRM3	ENSG00000198822|ENST00000361669|GRM3	ENSG00000198822|ENST00000361669|GRM3	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.275390625	2	544.325211	1086.63587	-0.58227	-0.00031694	3.7555	0.0020442	3.1732	0.0017273	544.327310961282	38.214	0.32545	38.214	38.114	38.44	0					10	6	2	0	0	0	0.026665	1	2143	2143		42.396	8.2236	1	27045			5557	8882	4435	4444	6753	6753					0.09601584096344595
DVIPAYEKF	9	Unmodified	_DVIPAYEKF_					0	0	0		tr|A0A553SIU4|A0A553SIU4_NIACITeichoicacidsexportABCtransporterATP-bindingsubunitTagHOS=NialliacirculansOX=1397GN=tagHPE=3SV=1	tr|A0A553SIU4|A0A553SIU4_NIACITeichoicacidsexportABCtransporterATP-bindingsubunitTagHOS=NialliacirculansOX=1397GN=tagHPE=3SV=1	tr|A0A553SIU4|A0A553SIU4_NIACITeichoicacidsexportABCtransporterATP-bindingsubunitTagHOS=NialliacirculansOX=1397GN=tagHPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.8322143554688	2	541.281857	1080.54916	-1.8666	-0.0010104	1.8708	0.0010127	0.0042441	2.2973E-06	541.2828883009756	124.74	1.3948	123.35	122.87	124.26	-1.3908					29	26	2	0	0	0	0.027432	1	11832	11832		67.494	5.3863	1	183340			5558	33425	4436	4445	6754	6754					0.012109208661286175
DVIPILQKLQ	10	Unmodified	_DVIPILQKLQ_					0	0	0			REV__tr|A0A553SIL6|A0A553SIL6_NIACIPolysaccharidebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_15055PE=4SV=1	REV__tr|A0A553SIL6|A0A553SIL6_NIACIPolysaccharidebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_15055PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	583.8577270507812	2	583.860806	1165.70706	-4.259	-0.0024867	1.0102	0.0005898	-3.2489	-0.0018969	583.8612282732444	154.9	1.2136	154.67	154.34	155.56	-0.22696					82	33	4	0	0	0	0.82648	1	15827	15827		15.642	0	1	148650	+		5559	29905	4437	4446	6755	6755					0.13083420125371958
DVKELPKPL	9	Unmodified	_DVKELPKPL_					0	0	0			REV__chr5:69168235-69171270|167|15.11|0.1|7.22|+|0|None,CCNB1|1	REV__chr5:69168235-69171270|167|15.11|0.1|7.22|+|0|None,CCNB1|1	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.7966918945312	2	519.813325	1037.6121	0.47322	0.00024599	3.8214	0.0019864	4.2946	0.0022324	519.8151601419917	80.015	0.60165	77.675	77.36	77.962	-2.3399					17	11	2	0	0	0	0.027433	1	4368	4368		45.972	0	1	29466	+		5560	16065	4438	4447	6756	6756					0.09479486654186076
DVKELSNGDL	10	Unmodified	_DVKELSNGDL_					0	0	0			REV__ENSG00000140043|ENST00000555661|PTGR2	REV__ENSG00000140043|ENST00000555661|PTGR2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.34619140625	2	545.274761	1088.53497	3.298	0.0017983	0.84503	0.00046077	4.143	0.0022591	545.275111238795	131.34	0.54932	129.87	129.64	130.19	-1.4779					17	11	2	0	0	0	0.026802	1	12599	12599		26.693	0	1	16426	+		5561	19650	4439	4448	6757	6757					-0.005757763527981297
DVKEQGAVAL	10	Unmodified	_DVKEQGAVAL_					0	0	0		nc|ENSG00000151687|Q7Z5J8-3|ANKAR;nc|ENSG00000151687|Q7Z5J8-2|ANKAR;ENSG00000151687|ENST00000684021|ANKAR	nc|ENSG00000151687|Q7Z5J8-3|ANKAR	nc|ENSG00000151687|Q7Z5J8-3|ANKAR	MULTI-MSMS	OvCa9_classI_Rep2	2	515.7813110351562	2	515.282389	1028.55022	-0.89808	-0.00046277	-1.0988	-0.00056618	-1.9969	-0.0010289	515.7827403771082	116.95	1.5848	116.82	116.27	117.86	-0.12869					85	31	4	0	0	0	0.37436	1	11214	11214		71.877	18.941	1	107950			5562	5575	4440	4449	6758	6758					0.03709135235044414
DVKEVIPEL	9	Unmodified	_DVKEVIPEL_					0	0	0		nc|ENSG00000141161|Q8IWX7-2|UNC45B;ENSG00000141161|ENST00000394570|UNC45B;nc|ENSG00000141161|Q8IWX7|UNC45B	nc|ENSG00000141161|Q8IWX7-2|UNC45B	nc|ENSG00000141161|Q8IWX7-2|UNC45B	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.33642578125	2	521.294965	1040.57538	1.4052	0.0007325	4.296	0.0022395	5.7011	0.002972	521.2971328659582	108.61	1.8825	108.61	108.11	110	0					71	42	2	0	0	0	0.027072	1	12367	12367		90.37	26.163	1	6757900			5563	4897	4441	4450	6759	6759					0.05671190037605811
DVKGFPGNYFG	11	Unmodified	_DVKGFPGNYFG_					0	0	0		tr|A0A553SH35|A0A553SH35_NIACIRegucalcinOS=NialliacirculansOX=1397GN=CEQ21_12065PE=3SV=1	tr|A0A553SH35|A0A553SH35_NIACIRegucalcinOS=NialliacirculansOX=1397GN=CEQ21_12065PE=3SV=1	tr|A0A553SH35|A0A553SH35_NIACIRegucalcinOS=NialliacirculansOX=1397GN=CEQ21_12065PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	600.3212280273438	2	600.787838	1199.56112	-1.6541	-0.00099374	2.1456	0.0012891	0.49157	0.00029533	600.7886520550838	108.09	0.94176	106.22	105.93	106.87	-1.8785					22	18	2	0	0	0	0.02535	1	9873	9873		45.022	0	1	21520			5564	33231	4442	4451	6760	6760					-0.030674623906861598
DVKKLENLVID	11	Unmodified	_DVKKLENLVID_					0	0	0			REV__POLB|p.V166L|1|0.12|ENSG00000070501|chr8:42357338-42357338|G/C|missense_variant	REV__POLB|p.V166L|1|0.12|ENSG00000070501|chr8:42357338-42357338|G/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	428.7147521972656	3	429.250249	1284.72892	1.8675	0.00080163	-2.6056	-0.0011185	-0.73812	-0.00031684	429.24910594333096	86.556	0.63792	83.929	83.613	84.25	-2.6269					17	12	2	0	0	0	0.025668	1	7317	7317		28.577	7.7396	1	22701	+		5565	29306	4443	4452	6761	6761					0.0979418008328139
DVKKLENLVID	11	Unmodified	_DVKKLENLVID_					0	0	0			REV__POLB|p.V166L|1|0.12|ENSG00000070501|chr8:42357338-42357338|G/C|missense_variant	REV__POLB|p.V166L|1|0.12|ENSG00000070501|chr8:42357338-42357338|G/C|missense_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		3	429.250249	1284.72892	-0.55947	-0.00024015	1.2332	0.00052937	0.67378	0.00028922	429.2506875019285	86.162	0.65101	83.942	83.686	84.337	-2.2204	0.0064835	0.0020245	NaN	28.577	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24518	+		5566	29306	4443	4452							0.0979418008328139
DVKNIKLAPLT	11	Unmodified	_DVKNIKLAPLT_					0	0	0			REV__ENSG00000138801|ENST00000265174|PAPSS1	REV__ENSG00000138801|ENST00000265174|PAPSS1	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3699340820312	2	606.371538	1210.72852	-3.14	-0.001904	-0.05994	-3.6346E-05	-3.1999	-0.0019404	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.72064	1	15070	15070		22.58	7.7148	1	257720	+		5567	19576	4444	4453	6762	6762					0.13158805154057518
DVKNLIKHI	9	Unmodified	_DVKNLIKHI_					0	0	0		nc|ENSG00000066827|Q9P243-3|ZFAT;nc|ENSG00000066827|Q9P243-2|ZFAT;ENSG00000066827|ENST00000377838|ZFAT;nc|ENSG00000066827|Q9P243-4|ZFAT	nc|ENSG00000066827|Q9P243-3|ZFAT	nc|ENSG00000066827|Q9P243-3|ZFAT	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.332275390625	2	540.332216	1078.64988	0.34656	0.00018726	-4.1131	-0.0022225	-3.7666	-0.0020352	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.59259	1	13502	13502		32.812	3.6629	1	342200			5568	1360	4445	4454	6763	6763					0.11369997639667417
DVKQWVWLMYL	11	Unmodified	_DVKQWVWLMYL_					0	0	0		ENST00000513603.1_1_5:102442389-102455787:-|nuORF	ENST00000513603.1_1_5:102442389-102455787:-|nuORF	ENST00000513603.1_1_5:102442389-102455787:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.28533935546875	3	494.260091	1479.75844	-0.446	-0.00022044	0.73178	0.00036169	0.28578	0.00014125	494.26082153203316	60.146	0.67957	60.146	59.879	60.559	0					19	16	2	0	0	0	0.02625	1	5231	5231		13.508	3.8618	1	983800			5569	13017	4446	4455	6764	6764					0.03775420827787457
DVKRATIL	8	Unmodified	_DVKRATIL_					0	0	0		tr|A0A553SMJ1|A0A553SMJ1_NIACIAminoacidpermeaseOS=NialliacirculansOX=1397GN=CEQ21_22695PE=4SV=1	tr|A0A553SMJ1|A0A553SMJ1_NIACIAminoacidpermeaseOS=NialliacirculansOX=1397GN=CEQ21_22695PE=4SV=1	tr|A0A553SMJ1|A0A553SMJ1_NIACIAminoacidpermeaseOS=NialliacirculansOX=1397GN=CEQ21_22695PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.2858581542969	2	458.284734	914.554916	-0.30143	-0.00013814	0.34764	0.00015932	0.046215	2.118E-05	458.2847584839154	65.172	2.1385	61.687	61.407	63.546	-3.4854					79	43	3	0	0	0	0.32444	2	4685	4672;4685		102.77	5.4203	1	747820			5570	33838	4447	4456	6765;6766	6766					0.09422064168484212
DVKRATIL	8	Unmodified	_DVKRATIL_					0	0	0		tr|A0A553SMJ1|A0A553SMJ1_NIACIAminoacidpermeaseOS=NialliacirculansOX=1397GN=CEQ21_22695PE=4SV=1	tr|A0A553SMJ1|A0A553SMJ1_NIACIAminoacidpermeaseOS=NialliacirculansOX=1397GN=CEQ21_22695PE=4SV=1	tr|A0A553SMJ1|A0A553SMJ1_NIACIAminoacidpermeaseOS=NialliacirculansOX=1397GN=CEQ21_22695PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	458.284734	914.554916	0.40148	0.00018399	-0.37804	-0.00017325	0.023443	1.0744E-05	458.2843773872066	64.387	1.915	61.662	61.128	63.043	-2.7246	-0.012413	-0.00029789	NaN	102.77	92	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	384610			5571	33838	4447	4456							0.09422064168484212
DVLEDPAIRN	10	Unmodified	_DVLEDPAIRN_					0	0	0		ENSG00000083520|ENST00000377767|DIS3	ENSG00000083520|ENST00000377767|DIS3	ENSG00000083520|ENST00000377767|DIS3	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.3134765625	2	571.296027	1140.5775	2.1734	0.0012416	-0.16661	-9.5181E-05	2.0068	0.0011465	571.2960392500294	121.95	0.46748	121.95	121.66	122.13	0					16	9	2	0	0	0	0.026635	1	14020	14020		39.253	0	1	159960			5572	1694	4448	4457	6767	6767					0.012836187754373896
DVLFIHGLM	9	Unmodified	_DVLFIHGLM_					0	0	0		ENST00000607742.5_1_6:158538757-158579378:-|nuORF;nc|ENSG00000122335|Q96JX3-2|SERAC1;ENSG00000122335|ENST00000647468|SERAC1	ENST00000607742.5_1_6:158538757-158579378:-|nuORF	ENST00000607742.5_1_6:158538757-158579378:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.8146362304688	2	522.78097	1043.54739	-1.0497	-0.00054877	-2.352	-0.0012296	-3.4017	-0.0017783	522.7794126679348	69.465	1.1196	65.984	65.371	66.49	-3.4812					31	22	2	0	0	0	0.027462	1	5186	5186		18.324	0	1	74509			5573	3526	4449	4458	6768	6768					0.027355885765246057
DVLGLQRI	8	Unmodified	_DVLGLQRI_					0	0	0		ENST00000578434.1_1_17:26879057-26879575:-|nuORF;nc|ENSG00000109103|Q13432-2|UNC119;ENSG00000109103|ENST00000335765|UNC119	ENST00000578434.1_1_17:26879057-26879575:-|nuORF	ENST00000578434.1_1_17:26879057-26879575:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.3144836425781	2	457.276909	912.539266	-0.05179	-2.3682E-05	3.9002	0.0017835	3.8484	0.0017598	457.2787066473631	71.395	0.47215	71.395	70.994	71.466	0					15	11	2	0	0	0	0.028476	1	6905	6905		68.485	0	1	245420			5574	2698	4450	4459	6769	6769					0.07949777651424483
DVLILKTDPNI	11	Unmodified	_DVLILKTDPNI_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000013050	REV__CON__ENSEMBL:ENSBTAP00000013050	MULTI-SECPEP	OvCa9_classI_Rep2	2	620.83447265625	2	620.861003	1239.70745	-1.2144	-0.00075398	-0.35058	-0.00021766	-1.565	-0.00097164	620.8612560252185	99.074	0.29915	98.181	97.907	98.206	-0.89305					7	5	2	0	0	0	0.025406	1	9001	9001		54.722	0	1	8070.5	+	+	5575	16172	4451	4460	6770	6770					0.09718795054573093
DVLINNILVY	10	Unmodified	_DVLINNILVY_					0	0	0		ENSG00000170920|ENST00000305444|OR7G3	ENSG00000170920|ENST00000305444|OR7G3	ENSG00000170920|ENST00000305444|OR7G3	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.2814331054688	2	588.337164	1174.65977	2.0153	0.0011857	-4.4765	-0.0026337	-2.4611	-0.001448	588.333674595051	87.703	0.12524	87.703	87.628	87.754	0					4	2	2	0	0	0	0.027056	1	9306	9306		14.865	0	1	87394			5576	7152	4452	4461	6771	6771					0.07943140854399644
DVLIVIYPMK	10	Unmodified	_DVLIVIYPMK_					0	0	0		ENSG00000174373|ENST00000680220|RALGAPA1;nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;ENST00000443361.1_1_9:108287470-108288637:+|nuORF	ENSG00000174373|ENST00000680220|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	596.2962646484375	2	595.84631	1189.67807	-0.32652	-0.00019455	-3.0271	-0.0018037	-3.3536	-0.0019982	595.8441657055577	69.898	0.63497	66.417	66.201	66.836	-3.4812					16	12	2	0	0	0	0.026734	1	5261	5261		47.657	12.039	1	56291			5577	7460	4453	4462	6772	6772					0.09081559504716097
DVLKEKADL	9	Unmodified	_DVLKEKADL_					0	0	0		ARID5B|p.M861Cfs*21|1|0.05|ENSG00000150347|chr10:62092044-62092044|A/-|frameshift_variant;ENSG00000150347|ENST00000279873|ARID5B;nc|ENSG00000150347|Q14865-3|ARID5B	ARID5B|p.M861Cfs*21|1|0.05|ENSG00000150347|chr10:62092044-62092044|A/-|frameshift_variant	ARID5B|p.M861Cfs*21|1|0.05|ENSG00000150347|chr10:62092044-62092044|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	514.8035888671875	2	515.792589	1029.57063	0.040745	2.1016E-05	0.33062	0.00017053	0.37137	0.00019155	515.7927045986353	94.808	1.105	92.912	92.46	93.565	-1.8956					43	21	3	0	0	0	0.027462	1	6157	6157		34.173	5.023	1	109130			5578	116	4454	4463	6773	6773					0.057023058948516336
DVLKELLAE	9	Unmodified	_DVLKELLAE_					0	0	0		tr|A0A553SLU6|A0A553SLU6_NIACI2,3-diketo-5-methylthio-1-phosphopentanephosphataseOS=NialliacirculansOX=1397GN=CEQ21_21320PE=4SV=1	tr|A0A553SLU6|A0A553SLU6_NIACI2,3-diketo-5-methylthio-1-phosphopentanephosphataseOS=NialliacirculansOX=1397GN=CEQ21_21320PE=4SV=1	tr|A0A553SLU6|A0A553SLU6_NIACI2,3-diketo-5-methylthio-1-phosphopentanephosphataseOS=NialliacirculansOX=1397GN=CEQ21_21320PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.7964477539062	2	515.294965	1028.57538	-0.81641	-0.00042069	2.7499	0.001417	1.9335	0.00099633	515.2963490895128	68.072	0.83884	68.072	67.642	68.481	0					54	20	4	0	0	0	0.027433	1	6374	6374		54.776	25.627	1	3646300			5579	33765	4455	4464	6774	6774					0.06223190037621862
DVLKVTHLI	9	Unmodified	_DVLKVTHLI_					0	0	0		tr|A0A7D6VRM1|A0A7D6VRM1_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07445PE=4SV=1	tr|A0A7D6VRM1|A0A7D6VRM1_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07445PE=4SV=1	tr|A0A7D6VRM1|A0A7D6VRM1_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07445PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.7562866210938	2	519.321317	1036.62808	0.71106	0.00036927	-0.42073	-0.00021849	0.29033	0.00015077	519.3209691444816	83.485	0.50739	83.485	83.293	83.801	0					24	11	3	0	0	0	0.027448	1	8696	8696		27.882	0	1	938130			5580	34942	4456	4465	6775	6775					0.11123192891091094
DVLLLVERWLY	11	Unmodified	_DVLLLVERWLY_					0	0	0			REV__ENST00000414645.6_1_8:95768308-95773989:+|nuORF	REV__ENST00000414645.6_1_8:95768308-95773989:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.7813415527344	3	473.606255	1417.79694	0.026979	1.2777E-05	-3.3663	-0.0015943	-3.3393	-0.0015815	473.9388848074052	60.667	0.21089	60.667	60.477	60.688	0					6	4	2	0	0	0	0.026344	1	5292	5292		6.001	2.7897	1	63216	+		5581	25521	4457	4466	6776	6776					0.10475049733963715
DVLLMIPPAL	10	Unmodified	_DVLLMIPPAL_					0	0	0			REV__ENSG00000171611|ENST00000304672|PTCRA	REV__ENSG00000171611|ENST00000304672|PTCRA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.8052368164062	2	541.319928	1080.6253	-1.2949	-0.00070095	3.3101	0.0017918	2.0152	0.0010909	541.3210667720496	80.102	0.14832	77.392	77.318	77.466	-2.7106					4	2	2	0	0	0	0.026768	1	6521	6521		31.955	1.4512	1	5926.5	+		5582	21631	4458	4467	6777	6777					0.08821601441900384
DVLLPIVII	9	Unmodified	_DVLLPIVII_					0	0	0			REV__nc|ENSG00000132958|Q6XPS3-7|TPTE2	REV__nc|ENSG00000132958|Q6XPS3-7|TPTE2	MSMS	OvCa99_classI_Rep5	1	497.83209228515625	2	497.830986	993.647419	NaN	NaN	NaN	NaN	NaN	NaN	NaN	162.53	1	162.53	162.03	163.03	0								0	0	0	0.11949	1	19059	19059		68.485	22.533	1		+		5583	19116	4459	4468	6778	6778					0.15034149182008605
DVLLVNESK	9	Unmodified	_DVLLVNESK_					0	0	0		ENSG00000110756|ENST00000349215|HPS5;nc|ENSG00000110756|Q9UPZ3-2|HPS5;ENST00000352460.7_1_11:18303495-18317646:-|nuORF	ENSG00000110756|ENST00000349215|HPS5	ENSG00000110756|ENST00000349215|HPS5	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.3138427734375	2	508.784764	1015.55498	-0.019727	-1.0037E-05	0.64474	0.00032803	0.62501	0.000318	508.7848514680848	69.199	0.698	69.199	68.815	69.513	0					41	16	4	0	0	0	0.027462	1	6605	6605		12.812	0	1	781250			5584	2793	4460	4469	6779	6779					0.047820193778079556
DVLQTHRP	8	Unmodified	_DVLQTHRP_					0	0	0		ENST00000525402.5_1_11:67275470-67275692:-|nuORF;ENST00000301488.7_1_11:67275099-67275692:-|nuORF	ENST00000525402.5_1_11:67275470-67275692:-|nuORF	ENST00000525402.5_1_11:67275470-67275692:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	483.261962890625	2	483.261791	964.509028	3.1961	0.0015446	-3.3749	-0.001631	-0.17876	-8.6389E-05	483.26001752471973	25.718	0.79281	23.009	22.867	23.66	-2.7097					28	18	2	0	0	0	0.73205	1	287	287		35.618	1.4457	1	65601			5585	10188	4461	4470	6780	6780					0.02535418986235527
DVLRGKFIF	9	Unmodified	_DVLRGKFIF_					0	0	0			REV__ENST00000482692.1_1_7:28449401-28450235:+|nuORF	REV__ENST00000482692.1_1_7:28449401-28450235:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	547.3394775390625	2	547.821484	1093.62842	0.72309	0.00039612	-2.2966	-0.0012581	-1.5735	-0.00086199	547.8204475620332	71.338	0.78801	68.831	68.489	69.277	-2.5071					25	14	2	0	0	0	0.027417	1	5730	5730		65.803	1.5959	1	53999	+		5586	26508	4462	4471	6781	6781					0.08534612610947079
DVLRTWEL	8	Unmodified	_DVLRTWEL_					0	0	0			REV__ENST00000406175.3_1_2:42513330-42557344:+|nuORF	REV__ENST00000406175.3_1_2:42513330-42557344:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	516.270751953125	2	516.279649	1030.54475	0.25239	0.0001303	1.8973	0.00097953	2.1497	0.0011098	516.2808352879474	78.9	1.3134	77.16	76.565	77.878	-1.7398					25	14	2	0	0	0	0.028476	1	6649	6649		60.972	7.6205	1	226340	+		5587	19875	4463	4472	6782	6782					0.030694564432451443
DVLRTWEL	8	Unmodified	_DVLRTWEL_					0	0	0			REV__ENST00000406175.3_1_2:42513330-42557344:+|nuORF	REV__ENST00000406175.3_1_2:42513330-42557344:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	516.279649	1030.54475	-0.68686	-0.00035461	3.7977	0.0019607	3.1109	0.0016061	516.7826226944359	79.836	0.47584	77.084	76.703	77.179	-2.7514	-0.037904	0.0011812	NaN	60.972	29	9	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	456940	+		5588	19875	4463	4472							0.030694564432451443
DVLSAPVPFI	10	Unmodified	_DVLSAPVPFI_					0	0	0		ENST00000485359.1_1_1:153912533-153913115:-|nuORF;DENND4B|p.R1431Lfs*11|1|0.05|ENSG00000198837|chr1:153930592-153930593|-/TCCCTGTGCCTCAA|frameshift_variant;DENND4B|p.E1432Sfs*24|1|0.07|ENSG00000198837|chr1:153930590-153930591|-/TCTGAGA|frameshift_variant;ENSG00000198837|ENST00000361217|DENND4B	ENST00000485359.1_1_1:153912533-153913115:-|nuORF	ENST00000485359.1_1_1:153912533-153913115:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.2984008789062	2	529.30005	1056.58555	0.016215	8.5826E-06	-4.2761	-0.0022633	-4.2598	-0.0022547	529.2976255669407	140.62	1.5493	139.13	138.65	140.2	-1.4952					64	29	3	0	0	0	0.58282	1	13718	13718		44.117	4.864	1	125420			5589	728	4464	4473	6783	6783					0.059517977628502194
DVLSAPVPFI	10	Unmodified	_DVLSAPVPFI_					0	0	0		ENST00000485359.1_1_1:153912533-153913115:-|nuORF;DENND4B|p.R1431Lfs*11|1|0.05|ENSG00000198837|chr1:153930592-153930593|-/TCCCTGTGCCTCAA|frameshift_variant;DENND4B|p.E1432Sfs*24|1|0.07|ENSG00000198837|chr1:153930590-153930591|-/TCTGAGA|frameshift_variant;ENSG00000198837|ENST00000361217|DENND4B	ENST00000485359.1_1_1:153912533-153913115:-|nuORF	ENST00000485359.1_1_1:153912533-153913115:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	529.30005	1056.58555	-2.1909	-0.0011596	-2.6058	-0.0013793	-4.7967	-0.0025389	529.2985511065026	140.18	0.59171	139.15	138.84	139.43	-1.0339	0.0077831	0.00070095	NaN	44.117	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28031			5590	728	4464	4473							0.059517977628502194
DVLSDMTNAE	10	Unmodified	_DVLSDMTNAE_					0	0	0			REV__ENSG00000118507|ENST00000431975|AKAP7	REV__ENSG00000118507|ENST00000431975|AKAP7	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.7672119140625	2	547.737154	1093.45975	1.6477	0.00090253	-2.553	-0.0013984	-0.90525	-0.00049584	547.7357224302231	81.875	0.6101	81.875	81.654	82.264	0					28	14	3	0	0	0	0.026956	1	8491	8491		19.997	0	1	1047400	+		5591	18402	4465	4474	6784	6784					-0.08323701875519873
DVLTLVPEE	9	Unmodified	_DVLTLVPEE_					0	0	0			REV__ENSG00000171132|ENST00000306156|PRKCE	REV__ENSG00000171132|ENST00000306156|PRKCE	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.3019714355469	2	507.771322	1013.52809	0.17245	8.7565E-05	0.37769	0.00019178	0.55014	0.00027935	507.77102172644896	81.931	1.1396	80.283	79.716	80.856	-1.6485					35	21	2	0	0	0	0.02741	1	6945	6945		19.997	0	1	53175	+		5592	21596	4466	4475	6785	6785					0.021869107666248055
DVLYQLVNP	9	Unmodified	_DVLYQLVNP_					0	0	0			REV__tr|A0A7D6ZRA0|A0A7D6ZRA0_9CLOTHydroxylaminereductaseOS=ClostridiumintestinaleOX=36845GN=hcpPE=3SV=1	REV__tr|A0A7D6ZRA0|A0A7D6ZRA0_9CLOTHydroxylaminereductaseOS=ClostridiumintestinaleOX=36845GN=hcpPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2620239257812	2	530.787307	1059.56006	2.415	0.0012819	1.3253	0.00070344	3.7403	0.0019853	531.2896038046217	91.76	0.42198	91.76	91.415	91.837	0					14	9	2	0	0	0	0.027462	1	9858	9858		35.618	0	1	868860	+		5593	32154	4467	4476	6786	6786					0.03266323240427482
DVMLKNIQG	9	Unmodified	_DVMLKNIQG_					0	0	0		ENSG00000152767|ENST00000319562|FARP1;nc|ENSG00000152767|Q9Y4F1-2|FARP1	ENSG00000152767|ENST00000319562|FARP1	ENSG00000152767|ENST00000319562|FARP1	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.30908203125	2	509.273509	1016.53247	-1.0264	-0.00052272	1.4702	0.00074871	0.44376	0.000226	509.7756066826031	82.117	1.095	79.821	79.385	80.48	-2.2963					53	21	4	0	0	0	0.027279	1	4677	4677		60.972	9.7792	1	159780			5594	5642	4468	4477	6787	6787					0.024860967085487573
DVMLMTVALL	10	Unmodified	_DVMLMTVALL_					0	0	0			REV__nc|ENSG00000107331|Q9BZC7|ABCA2	REV__nc|ENSG00000107331|Q9BZC7|ABCA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.7847290039062	2	553.303421	1104.59229	1.6673	0.00092253	-1.9497	-0.0010788	-0.28238	-0.00015624	553.301584296831	116.94	0.2249	116.94	116.86	117.09	0					6	4	2	0	0	0	0.026802	1	13383	13383		42.396	1.618	1	65045	+		5595	17843	4469	4478	6788	6788					0.04417651327571548
DVMRLNKID	9	Unmodified	_DVMRLNKID_					0	0	0			REV__ENST00000460813.5_1_3:113723339-113723381:-|nuORF	REV__ENST00000460813.5_1_3:113723339-113723381:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.8099365234375	2	552.297516	1102.58048	2.0994	0.0011595	0.94169	0.00052009	3.0411	0.0016796	552.2975644826993	95.17	0.87716	95.17	94.992	95.869	0					33	20	3	0	0	0	0.027461	1	10378	10378		49.442	21.559	1	678550	+		5596	26091	4470	4479	6789	6789					0.03329170628603606
DVNESNAKNV	10	Unmodified	_DVNESNAKNV_					0	0	0			REV__tr|A0A7D6VTH7|A0A7D6VTH7_9CLOTN-acetylmuramoyl-L-alanineamidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10915PE=4SV=1	REV__tr|A0A7D6VTH7|A0A7D6VTH7_9CLOTN-acetylmuramoyl-L-alanineamidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10915PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.2774658203125	2	545.262185	1088.50982	0.8687	0.00047367	2.4627	0.0013428	3.3314	0.0018165	545.2637706064444	151.05	0.60638	151.05	150.74	151.35	0					26	11	4	0	0	0	0.026659	1	17685	17685		45.972	19.279	1	58801	+		5597	31605	4471	4480	6790	6790					-0.03089831155398315
DVNLLKENSV	10	Unmodified	_DVNLLKENSV_					0	0	0		ENSG00000138771|ENST00000296043|SHROOM3	ENSG00000138771|ENST00000296043|SHROOM3	ENSG00000138771|ENST00000296043|SHROOM3	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.2653198242188	2	565.806228	1129.5979	2.3584	0.0013344	4.2138	0.0023842	6.5722	0.0037186	565.808550751945	87.674	0.70988	87.674	87.42	88.13	0					39	16	3	0	0	0	0.026577	1	9264	9264		58.23	12.258	1	1622500			5598	4728	4472	4481	6791	6791					0.03828789435215185
DVNLSQKPQV	10	Unmodified	_DVNLSQKPQV_					0	0	0		ENSG00000105497|ENST00000262259|ZNF175	ENSG00000105497|ENST00000262259|ZNF175	ENSG00000105497|ENST00000262259|ZNF175	MULTI-MSMS	OvCa9_classI_Rep3	3	564.3086547851562	2	564.306395	1126.59824	1.0995	0.00062047	-1.514	-0.00085438	-0.41451	-0.00023391	564.3042933701876	122.34	1.2059	121.31	120.8	122	-1.0286					61	22	5	0	0	0	0.49595	1	9376	9376		54.722	3.3869	1	515080			5599	2464	4473	4482	6792	6792					0.04000209155083212
DVNQSSPLC	9	Unmodified	_DVNQSSPLC_					0	0	0			REV__nc|ENSG00000069869|P46934-3|NEDD4	REV__nc|ENSG00000069869|P46934-3|NEDD4	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.71905517578125	2	481.716024	961.417496	-0.20167	-9.7145E-05	-3.1596	-0.001522	-3.3612	-0.0016192	481.7144456752881	60.182	0.7326	60.182	59.997	60.73	0					30	17	3	0	0	0	0.027426	1	5269	5269		39.253	2.8061	1	638450	+		5600	28729	4474	4483	6793	6793					-0.06475632493265948
DVNVAKLGML	10	Unmodified	_DVNVAKLGML_					0	0	0			REV__nc|ENSG00000290796|A4QPB2-2|LRP5L	REV__nc|ENSG00000290796|A4QPB2-2|LRP5L	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8248901367188	2	530.296985	1058.57942	1.0577	0.00056091	1.7428	0.00092423	2.8006	0.0014851	530.8008599789124	150.59	0.20128	150.59	150.49	150.69	0					5	3	2	0	0	0	0.026867	1	17623	17623		35.152	1.6364	1	9195.8	+		5601	29217	4475	4484	6794	6794					0.05246956259702529
DVPESPRI	8	Unmodified	_DVPESPRI_					0	0	0			REV__ENSG00000134504|ENST00000580059|KCTD1	REV__ENSG00000134504|ENST00000580059|KCTD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.7438659667969	2	456.742899	911.471246	-0.14918	-6.8138E-05	0.1443	6.5907E-05	-0.0048857	-2.2315E-06	456.7428091959259	74.432	2.3975	71.201	70.676	73.074	-3.2308					111	49	4	0	0	0	0.50674	1	5845	5845		76.847	1.8033	1	857600	+		5602	19208	4476	4485	6795	6795					0.01196908000770236
DVPGAVPLES	10	Unmodified	_DVPGAVPLES_					0	0	0		PTPRT|p.A752Gfs*77|1|0.29|ENSG00000196090|chr20:42248744-42248745|-/GGGAGCAGGGGAGGAGACAGGGTCTGGCTAGAAC|frameshift_variant;PTPRT|p.S834Ffs*21|1|0.38|ENSG00000196090|chr20:42161522-42161534|GCTCCCCGCGGCT/-|frameshift_variant;chr20:42199388-42248687|137|16.46|0.87|4.24|-|ENST00000373201|PTPRT,PTPRT;chr20:42161539-42199240|139|14.26|0.81|4.13|-|ENST00000373190|PTPRT,PTPRT;ENSG00000196090|ENST00000373187|PTPRT;chr20:42116098-42118403|125|12.59|0.57|4.46|-|ENST00000373184|PTPRT,PTPRT;chr20:42115315-42116039|128|12.88|0.61|4.4|-|ENST00000373184|PTPRT,PTPRT;nc|ENSG00000196090|O14522-1|PTPRT;PTPRT|p.E482D|1|0.04|ENSG00000196090|chr20:42472270-42472270|T/A|missense_variant	PTPRT|p.A752Gfs*77|1|0.29|ENSG00000196090|chr20:42248744-42248745|-/GGGAGCAGGGGAGGAGACAGGGTCTGGCTAGAAC|frameshift_variant	PTPRT|p.A752Gfs*77|1|0.29|ENSG00000196090|chr20:42248744-42248745|-/GGGAGCAGGGGAGGAGACAGGGTCTGGCTAGAAC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.8180236816406	2	492.25584	982.497126	-0.11496	-5.6589E-05	4.1622	0.0020489	4.0472	0.0019923	492.25780346233836	31.287	1.3737	31.287	30.979	32.353	0					37	27	2	0	0	0	0.026956	1	1242	1242		26.693	0	1	64717			5603	454	4477	4486	6796	6796					0.0051775745238273885
DVPGRRLEPQ	10	Unmodified	_DVPGRRLEPQ_					0	0	0		AHDC1|p.M539Sfs*46|1|0.61|ENSG00000126705|chr1:27550500-27550500|A/-|frameshift_variant;ENSG00000126705|ENST00000673934|AHDC1	AHDC1|p.M539Sfs*46|1|0.61|ENSG00000126705|chr1:27550500-27550500|A/-|frameshift_variant	AHDC1|p.M539Sfs*46|1|0.61|ENSG00000126705|chr1:27550500-27550500|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	584.3080444335938	2	583.817461	1165.62037	-1.5721	-0.00091781	3.021	0.0017637	1.4489	0.00084588	583.8186740625368	100.93	0.80972	98.662	98.446	99.256	-2.2665					24	16	3	0	0	0	0.027028	1	9110	9110		12.812	0	1	60115			5604	52	4478	4487	6797	6797					0.04418433623527562
DVPKWISI	8	Unmodified	_DVPKWISI_					0	0	0		nc|ENSG00000231991|A6NMY6|ANXA2P2;ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2	nc|ENSG00000231991|A6NMY6|ANXA2P2	nc|ENSG00000231991|A6NMY6|ANXA2P2	MULTI-MSMS	OvCa99_classI_Rep5	1	479.2732238769531	2	479.273835	956.533118	-0.071543	-3.4289E-05	-3.4369	-0.0016472	-3.5085	-0.0016815	479.272096153117	69.408	0.81615	69.408	68.815	69.632	0					38	19	3	0	0	0	0.56195	1	6599	6599		71.296	7.9894	1	2466400			5605	8019	4479	4488	6798	6798					0.05311259419897851
DVPLVTVQV	9	Unmodified	_DVPLVTVQV_					0	0	0			REV__ENSG00000183090|ENST00000329798|FREM3	REV__ENSG00000183090|ENST00000329798|FREM3	MULTI-MSMS	OvCa9_classI_Rep2	2	485.2828674316406	2	485.2844	968.554247	-1.9489	-0.00094577	-1.0764	-0.00052236	-3.0253	-0.0014681	485.2837680529316	35.087	1.3898	32.377	32.109	33.499	-2.7097					66	27	4	0	0	0	0.64427	1	1401	1401		26.693	0	1	549360	+		5606	22340	4480	4489	6799	6799					0.06871224728752168
DVPSPLHAGS	10	Unmodified	_DVPSPLHAGS_					0	0	0		nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1;nc|ENSG00000166783|Q9Y4F3-6|MARF1;ENST00000548216.2_1_16:15729470-15733102:-|nuORF;KIAA0430-MYH11|3|fusion;KIAA0430-MYH11|1|fusion;KIAA0430-MYH11|2|fusion	nc|ENSG00000166783|Q9Y4F3-3|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.24627685546875	2	490.245806	978.47706	-0.21003	-0.00010296	-1.5886	-0.00077879	-1.7986	-0.00088175	490.2450385240117	63.057	3.0011	59.582	59.044	62.045	-3.475					145	61	4	0	0	0	0.65434	1	4459	4459		35.618	1.4457	1	4610600			5607	6710	4481	4490	6800	6800					-0.013039934875678227
DVPSPVPQF	9	Unmodified	_DVPSPVPQF_					0	0	0		ENST00000538954.5_1_9:124101755-124101821:-|nuORF	ENST00000538954.5_1_9:124101755-124101821:-|nuORF	ENST00000538954.5_1_9:124101755-124101821:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.8021240234375	2	493.2531	984.491647	0.5149	0.00025398	0.66723	0.00032911	1.1821	0.00058309	493.2532403869913	60.123	1.3851	56.693	56.259	57.644	-3.43					44	27	2	0	0	0	0.027441	1	4165	4165		40.778	15.328	1	36402			5608	13428	4482	4491	6801	6801					-0.0012192133942789951
DVPSPVPQF	9	Unmodified	_DVPSPVPQF_					0	0	0		ENST00000538954.5_1_9:124101755-124101821:-|nuORF	ENST00000538954.5_1_9:124101755-124101821:-|nuORF	ENST00000538954.5_1_9:124101755-124101821:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	493.2531	984.491647	-0.25598	-0.00012626	0.57233	0.0002823	0.31636	0.00015604	493.2518581847007	56.669	0.20602	56.669	56.538	56.744	0	-0.011858	-6.6328E-05	NaN	40.778	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111040			5609	13428	4482	4491							-0.0012192133942789951
DVPVCEVTIN	10	Unmodified	_DVPVCEVTIN_					0	0	0			REV__ENSG00000147251|ENST00000276202|DOCK11	REV__ENSG00000147251|ENST00000276202|DOCK11	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.8165283203125	2	544.768257	1087.52196	0.31729	0.00017285	3.8746	0.0021107	4.1918	0.0022836	544.7702452988545	162.35	0.91498	162.35	161.56	162.48	0					32	17	4	0	0	0	0.026891	1	19009	19009		39.253	5.0803	1	292550	+		5610	20056	4483	4492	6802	6802					-0.01829930736539609
DVQDPFAR	8	Unmodified	_DVQDPFAR_					0	0	0		ENSG00000204071|ENST00000372774|TCEAL6	ENSG00000204071|ENST00000372774|TCEAL6	ENSG00000204071|ENST00000372774|TCEAL6	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.24981689453125	2	474.232699	946.450845	-0.17088	-8.1036E-05	-1.7995	-0.00085337	-1.9704	-0.00093441	474.23217049213343	50.952	0.56333	50.952	50.685	51.248	0					27	12	3	0	0	0	0.028476	1	3930	3930		35.618	8.8222	1	342360			5611	8945	4484	4493	6803	6803					-0.0245226265905103
DVQGDVPVWL	10	Unmodified	_DVQGDVPVWL_					0	0	0			REV__nc|ENSG00000291135|Q92637|FCGR1BP	REV__nc|ENSG00000291135|Q92637|FCGR1BP	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.8491821289062	2	564.290214	1126.56587	2.6006	0.0014675	-0.42998	-0.00024263	2.1706	0.0012248	564.2898973006775	116.39	0.45705	116.39	116.09	116.55	0					17	9	3	0	0	0	0.026849	1	13307	13307		25.574	3.6142	1	209470	+		5612	20186	4485	4494	6804	6804					0.007654217520894235
DVQHRLSD	8	Unmodified	_DVQHRLSD_					0	0	0			REV__ENSG00000168071|ENST00000356786|CCDC88B	REV__ENSG00000168071|ENST00000356786|CCDC88B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.2708740234375	2	485.241055	968.467557	-2.1309	-0.001034	-2.5707	-0.0012474	-4.7017	-0.0022814	485.2395562767453	49.404	1.2484	46.262	45.623	46.871	-3.1416					41	23	3	0	0	0	0.028476	1	2804	2804		58.782	2.0609	1	76008	+		5613	21344	4486	4495	6805	6805					-0.01793761773103597
DVQLYYQL	8	Unmodified	_DVQLYYQL_					0	0	0			REV__ENST00000561691.5_1_15:43691337-43697409:+|nuORF	REV__ENST00000561691.5_1_15:43691337-43697409:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.7920532226562	2	521.266207	1040.51786	0.13947	7.2702E-05	-0.47904	-0.00024971	-0.33956	-0.000177	521.2658496334307	96.482	1.0527	94.056	93.811	94.863	-2.4256					31	20	2	0	0	0	0.028476	1	8584	8584		29.15	0	1	83221	+		5614	19484	4487	4496	6806	6806					-0.0007765216794268781
DVQSRWLN	8	Unmodified	_DVQSRWLN_					0	0	0			REV__MAN1A2-TTF2|1|fusion	REV__MAN1A2-TTF2|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.749755859375	2	509.259248	1016.50394	-0.10392	-5.2923E-05	-0.044973	-2.2903E-05	-0.1489	-7.5827E-05	509.25920486821855	43.035	0.30269	43.035	42.883	43.185	0					9	6	2	0	0	0	0.028476	1	2827	2827		53.351	0	1	81778	+		5615	18322	4488	4497	6807	6807					-0.0036488487638735023
DVRELKEIL	9	Unmodified	_DVRELKEIL_					0	0	0		tr|A0A7D6VRS1|A0A7D6VRS1_9CLOTFeMocofactorbiosynthesisproteinNifBOS=ClostridiumintestinaleOX=36845GN=nifBPE=3SV=1	tr|A0A7D6VRS1|A0A7D6VRS1_9CLOTFeMocofactorbiosynthesisproteinNifBOS=ClostridiumintestinaleOX=36845GN=nifBPE=3SV=1	tr|A0A7D6VRS1|A0A7D6VRS1_9CLOTFeMocofactorbiosynthesisproteinNifBOS=ClostridiumintestinaleOX=36845GN=nifBPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	557.8278198242188	2	557.826963	1113.63937	-0.28609	-0.00015959	1.1743	0.00065505	0.8882	0.00049546	557.8269134856256	68.172	1.0496	68.172	67.642	68.692	0					74	25	5	0	0	0	0.035142	1	6425	6425		131.03	3.5697	1	4437300			5616	34952	4489	4498	6808	6808					0.08709970194581729
DVRGRGRLLGL	11	Unmodified	_DVRGRGRLLGL_					0	0	0		ENST00000426335.6_1_11:47186000-47186366:-|nuORF	ENST00000426335.6_1_11:47186000-47186366:-|nuORF	ENST00000426335.6_1_11:47186000-47186366:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3698120117188	2	606.370195	1210.72584	-0.26856	-0.00016285	-0.5906	-0.00035812	-0.85916	-0.00052097	606.369699493104	145.24	3.8933	143.8	141.64	145.53	-1.4357					226	74	4	0	0	0	0.71498	1	14340	14340		24.519	0.28737	1	336140			5617	11733	4490	4499	6809	6809					0.12890394539795125
DVRIVRDD	8	Unmodified	_DVRIVRDD_					0	0	0		nc|ENSG00000172236|Q15661-2|TPSAB1;ENSG00000197253|ENST00000606293|TPSB2;ENSG00000172236|ENST00000338844|TPSAB1	nc|ENSG00000172236|Q15661-2|TPSAB1	nc|ENSG00000172236|Q15661-2|TPSAB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.2518005371094	2	494.26453	986.514508	1.6995	0.00084003	3.3644	0.0016629	5.0639	0.0025029	494.2666107832672	101.28	0.33617	101.28	100.98	101.32	0					10	7	2	0	0	0	0.028476	1	11231	11231		24.203	0	1	141470			5618	7278	4491	4500	6810	6810					0.020710977780368012
DVRKALPVI	9	Unmodified	_DVRKALPVI_					0	0	0			REV__ENST00000518542.1_1_8:19315287-19352580:-|nuORF	REV__ENST00000518542.1_1_8:19315287-19352580:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.30645751953125	2	505.821484	1009.62842	2.5614	0.0012956	-0.55426	-0.00028036	2.0072	0.0010153	505.8210797038357	94.444	0.46813	94.444	94.264	94.732	0					15	10	2	0	0	0	0.027093	1	10291	10291		96.19	24.313	1	255260	+		5619	20062	4492	4501	6811	6811					0.1239861261092301
DVRSDISPE	9	Unmodified	_DVRSDISPE_					0	0	0		tr|A0A7D6VTY6|A0A7D6VTY6_9CLOTDUF2922domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09555PE=4SV=1	tr|A0A7D6VTY6|A0A7D6VTY6_9CLOTDUF2922domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09555PE=4SV=1	tr|A0A7D6VTY6|A0A7D6VTY6_9CLOTDUF2922domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09555PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.2785949707031	2	509.246003	1016.47745	2.18	0.0011101	-0.96169	-0.00048974	1.2183	0.00062041	509.2433282013284	76.981	0.36924	76.981	76.799	77.168	0					13	8	2	0	0	0	0.027462	1	7735	7735		34.173	2.6427	1	184060			5620	35152	4493	4502	6812	6812					-0.030126185583867482
DVRVLLGHLLM	11	Unmodified	_DVRVLLGHLLM_					0	0	0		nc|ENSG00000132185|Q7L513-10|FCRLA;nc|ENSG00000132185|Q7L513-9|FCRLA;nc|ENSG00000132185|Q7L513-2|FCRLA;ENSG00000132185|ENST00000236938|FCRLA;nc|ENSG00000132185|Q7L513-8|FCRLA;nc|ENSG00000132185|Q7L513-15|FCRLA;nc|ENSG00000132185|Q7L513-12|FCRLA;nc|ENSG00000132185|Q7L513-3|FCRLA;nc|ENSG00000132185|Q7L513-11|FCRLA;nc|ENSG00000132185|Q7L513-7|FCRLA;nc|ENSG00000132185|Q7L513-14|FCRLA;nc|ENSG00000132185|Q7L513-4|FCRLA;nc|ENSG00000132185|Q7L513-5|FCRLA;nc|ENSG00000132185|Q7L513-13|FCRLA;nc|ENSG00000132185|Q7L513-6|FCRLA;ENST00000470841.1_1_1:161681590-161683167:+|nuORF	nc|ENSG00000132185|Q7L513-10|FCRLA	nc|ENSG00000132185|Q7L513-10|FCRLA	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.367919921875	2	633.373558	1264.73256	-2.6571	-0.001683	-4.3264	-0.0027402	-6.9835	-0.0044232	633.3706685096566	150.42	2.9234	148.98	147.78	150.7	-1.4344					195	63	4	0	0	0	0.72244	1	14830	14830		21.96	1.9631	1	147740			5621	4116	4494	4503	6813	6813					0.11078571376151558
DVRVVLDLQ	9	Unmodified	_DVRVVLDLQ_					0	0	0			REV__tr|A0A553SS46|A0A553SS46_NIACIZn-dependenthydrolaseOS=NialliacirculansOX=1397GN=CEQ21_02325PE=3SV=1	REV__tr|A0A553SS46|A0A553SS46_NIACIZn-dependenthydrolaseOS=NialliacirculansOX=1397GN=CEQ21_02325PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	529.306396484375	2	528.806031	1055.59751	-1.2413	-0.00065642	-1.9712	-0.0010424	-3.2125	-0.0016988	529.3059963064875	103.84	3.275	103.27	102.83	106.11	-0.57639					87	65	2	0	0	0	0.51177	1	9588	9588		41.427	0.64845	1	765080	+		5622	30803	4495	4504	6814	6814					0.07193414506036788
DVSHEDPEV	9	Unmodified	_DVSHEDPEV_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211897|P01860|IGHG3	nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.8330078125	2	513.722361	1025.43017	2.2745	0.0011685	3.6452	0.0018726	5.9197	0.0030411	513.7239820647128	97.105	0.47235	97.105	96.881	97.353	0					23	10	3	0	0	0	0.027433	1	10680	10680		60.972	15.02	1	441400			5623	15299;15300	4496	4505	6815	6815					-0.081528978293818
DVSHEDPEV	9	Unmodified	_DVSHEDPEV_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211897|P01860|IGHG3	nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	513.722361	1025.43017	0.050155	2.5766E-05	5.3034	0.0027245	5.3536	0.0027503	513.7250590712163	98.58	0.51899	96.845	96.596	97.115	-1.7355	-0.067578	0.0010527	NaN	42.396	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12772			5624	15299;15300	4496	4505							-0.081528978293818
DVSHEDPEV	9	Unmodified	_DVSHEDPEV_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211897|P01860|IGHG3	nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	513.722361	1025.43017	-0.57597	-0.00029589	4.8124	0.0024722	4.2364	0.0021763	513.7249480573316	99.112	0.52016	96.786	96.639	97.16	-2.3253	-0.12563	0.00054818	NaN	42.396	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24198			5625	15299;15300	4496	4505							-0.081528978293818
DVSIALESIL	10	Unmodified	_DVSIALESIL_					0	0	0		tr|A0A7D6VYT6|A0A7D6VYT6_9CLOTBMCdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17745PE=4SV=1	tr|A0A7D6VYT6|A0A7D6VYT6_9CLOTBMCdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17745PE=4SV=1	tr|A0A7D6VYT6|A0A7D6VYT6_9CLOTBMCdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17745PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.752197265625	2	530.300247	1058.58594	2.1837	0.001158	0.81332	0.0004313	2.997	0.0015893	530.3006560050256	98.731	1.0706	98.731	98.247	99.318	0					65	25	4	0	0	0	0.027213	1	10901	10901		76.774	17.992	1	6369200			5626	35338	4497	4506	6816	6816					0.058991726920339715
DVSIALESIL	10	Unmodified	_DVSIALESIL_					0	0	0		tr|A0A7D6VYT6|A0A7D6VYT6_9CLOTBMCdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17745PE=4SV=1	tr|A0A7D6VYT6|A0A7D6VYT6_9CLOTBMCdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17745PE=4SV=1	tr|A0A7D6VYT6|A0A7D6VYT6_9CLOTBMCdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17745PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	530.2980346679688	2	530.300247	1058.58594	-1.5885	-0.00084236	1.9014	0.0010083	0.31294	0.00016595	530.3012131218308	99.958	1.4879	99.127	98.666	100.15	-0.83052					62	29	4	0	0	0	0.18827	1	9138	9138		96.19	11.03	1	407780			5627	35338	4497	4506	6817	6817					0.058991726920339715
DVSIALESIL	10	Unmodified	_DVSIALESIL_					0	0	0		tr|A0A7D6VYT6|A0A7D6VYT6_9CLOTBMCdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17745PE=4SV=1	tr|A0A7D6VYT6|A0A7D6VYT6_9CLOTBMCdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17745PE=4SV=1	tr|A0A7D6VYT6|A0A7D6VYT6_9CLOTBMCdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17745PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	530.3002319335938	2	530.300247	1058.58594	-0.80786	-0.00042841	1.0223	0.00054212	0.21443	0.00011371	530.301047020851	100.77	1.9495	99.167	98.755	100.7	-1.6053					71	37	4	0	0	0	0.15262	1	6854	6854		101.6	8.4052	1	580430			5628	35338	4497	4506	6818	6818					0.058991726920339715
DVSIALESIL	10	Unmodified	_DVSIALESIL_					0	0	0		tr|A0A7D6VYT6|A0A7D6VYT6_9CLOTBMCdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17745PE=4SV=1	tr|A0A7D6VYT6|A0A7D6VYT6_9CLOTBMCdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17745PE=4SV=1	tr|A0A7D6VYT6|A0A7D6VYT6_9CLOTBMCdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17745PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.2991333007812	2	530.300247	1058.58594	-1.4533	-0.00077069	-0.12436	-6.5946E-05	-1.5777	-0.00083664	530.3004531187839	101.39	0.81617	99.125	98.792	99.609	-2.2665					55	16	5	0	0	0	0.35465	2	9111	9111;9126		74.255	7.8258	1	496790			5629	35338	4497	4506	6819;6820	6819					0.058991726920339715
DVSLDFDEEVE	11	Unmodified	_DVSLDFDEEVE_					0	0	0		tr|A0A7D7A0Y4|A0A7D7A0Y4_9CLOTProteinkinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05200PE=4SV=1	tr|A0A7D7A0Y4|A0A7D7A0Y4_9CLOTProteinkinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05200PE=4SV=1	tr|A0A7D7A0Y4|A0A7D7A0Y4_9CLOTProteinkinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05200PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	648.0348510742188	2	648.77753	1295.54051	1.972	0.0012794	1.1349	0.00073632	3.1069	0.0020157	649.2794867503535	126.21	0.37816	126.21	126.04	126.42	0					10	7	2	0	0	0	0.025457	1	14594	14594		44.377	23.54	1	51446			5630	36013	4498	4507	6821	6821					-0.09544142351637674
DVSLKAKSI	9	Unmodified	_DVSLKAKSI_					0	0	0			REV__tr|A0A7D6ZGX5|A0A7D6ZGX5_9CLOTTniBfamilyNTP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20765PE=4SV=1	REV__tr|A0A7D6ZGX5|A0A7D6ZGX5_9CLOTTniBfamilyNTP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20765PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.76849365234375	2	480.78985	959.565146	-0.98065	-0.00047149	-0.86304	-0.00041494	-1.8437	-0.00088643	480.78918209965826	54.63	0.87083	51.383	50.876	51.747	-3.2474					18	16	2	0	0	0	0.027343	1	3405	3405		79.451	0	1	15887	+		5631	32011	4499	4508	6822	6822					0.0837462710304635
DVSNAFIHAR	10	Unmodified	_DVSNAFIHAR_					0	0	0			REV__ENST00000534728.1_1_11:124983810-124984254:+|nuORF	REV__ENST00000534728.1_1_11:124983810-124984254:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	564.3323974609375	2	565.291079	1128.56761	-0.43373	-0.00024518	-2.396	-0.0013545	-2.8298	-0.0015996	565.289603155054	118.34	0.99097	117.31	116.98	117.97	-1.0324					22	19	2	0	0	0	0.026681	1	8934	8934		29.17	0	1	99274	+		5632	27273	4500	4509	6823	6823					0.008464755607064944
DVSQICQEVH	10	Unmodified	_DVSQICQEVH_					0	0	0		tr|A0A553SLK8|A0A553SLK8_NIACIMgahelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20805PE=4SV=1	tr|A0A553SLK8|A0A553SLK8_NIACIMgahelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20805PE=4SV=1	tr|A0A553SLK8|A0A553SLK8_NIACIMgahelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20805PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	579.2669677734375	2	579.266413	1156.51827	1.0849	0.00062842	-1.858	-0.0010763	-0.77311	-0.00044783	579.2647669057345	123.1	0.8381	123.1	122.68	123.51	0					38	17	3	0	0	0	0.58067	1	14210	14210		44.377	4.319	1	422720			5633	33736	4501	4510	6824	6824					-0.05372600510395387
DVSVKKPPRGR	11	Unmodified	_DVSVKKPPRGR_					0	0	0		nc|ENSG00000167674|Q7Z4V5-2|HDGFL2;ENSG00000167674|ENST00000616600|HDGFL2;nc|ENSG00000167674|Q7Z4V5-4|HDGFL2;nc|ENSG00000167674|Q7Z4V5-3|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8680419921875	2	619.870028	1237.7255	-3.6059	-0.0022352	2.5915	0.0016064	-1.0145	-0.00062885	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.71191	1	13120	13120		25.574	3.6142	1	664560			5634	6829	4502	4511	6825	6825					0.11614974819917734
DVSYLTELD	9	Unmodified	_DVSYLTELD_					0	0	0		tr|A0A553SKC7|A0A553SKC7_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_18615PE=4SV=1	tr|A0A553SKC7|A0A553SKC7_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_18615PE=4SV=1	tr|A0A553SKC7|A0A553SKC7_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_18615PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.8419799804688	2	527.750587	1053.48662	-0.043591	-2.3005E-05	4.3994	0.0023218	4.3558	0.0022988	527.7526970472861	64.878	0.44102	64.878	64.631	65.072	0					15	10	2	0	0	0	0.027462	1	5936	5936		27.882	0	1	422160			5635	33601	4503	4512	6826	6826					-0.037982699927397334
DVTCETLLVR	10	Unmodified	_DVTCETLLVR_					0	0	0			REV__ENSG00000185722|ENST00000341657|ANKFY1	REV__ENSG00000185722|ENST00000341657|ANKFY1	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.8263549804688	2	574.802631	1147.59071	0.56547	0.00032503	1.2693	0.0007296	1.8348	0.0010546	574.8037656116131	81.149	0.62704	81.149	80.827	81.455	0					24	14	2	0	0	0	0.026849	1	8389	8389		32.812	1.2826	1	180130	+		5636	22522	4504	4513	6827	6827					0.02281733563177113
DVTDRPGED	9	Unmodified	_DVTDRPGED_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.3017272949219	2	502.219985	1002.42542	-1.4942	-0.00075041	0.98377	0.00049407	-0.51043	-0.00025635	502.7224886845812	102.99	0.39405	102.3	102.23	102.62	-0.68459					11	7	2	0	0	0	0.027446	1	9505	9505		51.193	34.72	1	10486	+		5637	29089	4505	4514	6828	6828					-0.07569781972131295
DVTDRPGED	9	Unmodified	_DVTDRPGED_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-SECPEP	OvCa9_classI_Rep3	3	501.30157470703125	2	502.219985	1002.42542	-0.041228	-2.0706E-05	-0.38309	-0.00019239	-0.42432	-0.0002131	502.2194819917525	104.06	0.67818	102.63	102.39	103.07	-1.4347					23	12	3	0	0	0	0.027403	1	7213	7213		69.628	30.375	1	25341	+		5638	29089	4505	4514	6829	6829					-0.07569781972131295
DVTDYCFPYL	10	Unmodified	_DVTDYCFPYL_					0	0	0		HHIPL1|p.D153V|1|0.09|ENSG00000182218|chr14:99652426-99652426|A/T|missense_variant	HHIPL1|p.D153V|1|0.09|ENSG00000182218|chr14:99652426-99652426|A/T|missense_variant	HHIPL1|p.D153V|1|0.09|ENSG00000182218|chr14:99652426-99652426|A/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	618.27197265625	2	618.26809	1234.52163	1.0198	0.0006305	4.2379	0.0026202	5.2577	0.0032507	618.2704422651327	138.89	1.0117	138.89	138.55	139.56	0					48	20	4	0	0	0	0.64063	1	16209	16209		37.159	1.5408	1	328850			5639	14481	4506	4515	6830	6830					-0.08625350456395608
DVTTLICRN	9	Unmodified	_DVTTLICRN_					0	0	0			REV__ENST00000472447.1_1_1:220953498-220955240:+|nuORF	REV__ENST00000472447.1_1_1:220953498-220955240:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.3199462890625	2	517.768591	1033.52263	1.0446	0.00054088	3.9053	0.0020221	4.95	0.0025629	518.272245130892	113.74	0.76079	113.74	113.57	114.33	0					25	16	2	0	0	0	0.027455	1	12999	12999		34.173	0	1	141090	+		5640	26312	4507	4516	6831	6831					0.007209087031696981
DVTTPDAKAL	10	Unmodified	_DVTTPDAKAL_					0	0	0		sp|P16785|LTP_HCMVALargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL48PE=1SV=1;sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	sp|P16785|LTP_HCMVALargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL48PE=1SV=1;sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.7760009765625	2	515.774396	1029.53424	0.14517	7.4876E-05	-0.69	-0.00035588	-0.54482	-0.00028101	515.7740265782754	71.973	1.567	71.973	71.668	73.235	0					75	38	4	0	0	0	0.42962	1	7000	7000		64.207	7.7735	1	26788000			5641	32899;32910	4508	4517	6832	6832					0.02065428998139396
DVVAIAPDVR	10	Unmodified	_DVVAIAPDVR_					0	0	0		ENSG00000161031|ENST00000340880|PGLYRP2;nc|ENSG00000161031|Q96PD5-2|PGLYRP2	ENSG00000161031|ENST00000340880|PGLYRP2	ENSG00000161031|ENST00000340880|PGLYRP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.7467041015625	2	527.798206	1053.58186	1.2277	0.00064799	2.3246	0.0012269	3.5523	0.0018749	527.7991358460579	137.51	1.287	135.96	135.67	136.95	-1.5437					50	28	3	0	0	0	0.026931	1	13451	13451		23.523	11.316	1	23201		+	5642	6117	4509	4518	6833	6833					0.057211279889770594
DVVAIAPDVR	10	Unmodified	_DVVAIAPDVR_					0	0	0		ENSG00000161031|ENST00000340880|PGLYRP2;nc|ENSG00000161031|Q96PD5-2|PGLYRP2	ENSG00000161031|ENST00000340880|PGLYRP2	ENSG00000161031|ENST00000340880|PGLYRP2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	527.798206	1053.58186	-0.7411	-0.00039115	4.3199	0.0022801	3.5789	0.0018889	527.8002700456685	136.39	1.1224	136.17	135.86	136.99	-0.22697	0.11435	0.0003441	NaN	23.523	37	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28854		+	5643	6117	4509	4518							0.057211279889770594
DVVAIAPDVR	10	Unmodified	_DVVAIAPDVR_					0	0	0		ENSG00000161031|ENST00000340880|PGLYRP2;nc|ENSG00000161031|Q96PD5-2|PGLYRP2	ENSG00000161031|ENST00000340880|PGLYRP2	ENSG00000161031|ENST00000340880|PGLYRP2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	527.798206	1053.58186	-1.7121	-0.00090367	5.1311	0.0027082	3.419	0.0018045	527.8007230723686	137.11	0.82275	136.03	135.81	136.63	-1.0858	-0.025692	0.0012004	NaN	23.523	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24112		+	5644	6117	4509	4518							0.057211279889770594
DVVDCLHTYL	10	Unmodified	_DVVDCLHTYL_					0	0	0			REV__ENSG00000074755|ENST00000381638|ZZEF1	REV__ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	OvCa99_classI_Rep5	1	589.2831420898438	2	589.281531	1176.54851	1.0765	0.00063436	4.3364	0.0025553	5.4129	0.0031897	589.2840497062758	155.09	0.85597	155.09	154.83	155.68	0					46	16	4	0	0	0	0.66721	1	18162	18162		34.173	3.6689	1	273200	+		5645	16953	4510	4519	6834	6834					-0.032702418452117854
DVVEEVVTK	9	Unmodified	_DVVEEVVTK_					0	0	0			REV__CON__Q9D312	REV__CON__Q9D312	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.30279541015625	2	509.276772	1016.53899	-0.93892	-0.00047817	1.5081	0.00076806	0.56923	0.0002899	509.2773256029634	90.833	1.2677	88.752	88.464	89.732	-2.0805					65	24	4	0	0	0	0.027402	1	5702	5702		76.774	25.439	1	340350	+	+	5646	16224	4511	4520	6835	6835					0.03138313140914306
DVVELVMEL	9	Unmodified	_DVVELVMEL_					0	0	0		tr|A0A553SP58|A0A553SP58_NIACIAcylcarrierproteinOS=NialliacirculansOX=1397GN=acpPPE=3SV=1	tr|A0A553SP58|A0A553SP58_NIACIAcylcarrierproteinOS=NialliacirculansOX=1397GN=acpPPE=3SV=1	tr|A0A553SP58|A0A553SP58_NIACIAcylcarrierproteinOS=NialliacirculansOX=1397GN=acpPPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.8192749023438	2	523.775551	1045.53655	0.063393	3.3204E-05	1.9575	0.0010253	2.0209	0.0010585	524.2776971538021	68.414	0.73922	64.924	64.622	65.362	-3.4902					31	14	3	0	0	0	0.027462	1	5038	5038		27.882	4.8398	1	91349			5647	34004	4512	4521	6836	6836					0.015601414115963053
DVVERQPI	8	Unmodified	_DVVERQPI_					0	0	0			REV__nc|ENSG00000135100|P20823-5|HNF1A	REV__nc|ENSG00000135100|P20823-5|HNF1A	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.2650451660156	2	478.263999	954.513445	0.1499	7.1694E-05	-0.93042	-0.00044498	-0.78051	-0.00037329	478.2635310226388	62.047	3.0424	58.589	57.417	60.459	-3.4577					136	62	4	0	0	0	0.64026	1	4349	4349		55.504	2.1528	1	2869500	+		5648	19258	4513	4522	6837	6837					0.03436883409131042
DVVLPRDL	8	Unmodified	_DVVLPRDL_					0	0	0			REV__nc|ENSG00000141837|O00555-5|CACNA1A	REV__nc|ENSG00000141837|O00555-5|CACNA1A	MULTI-SECPEP	OvCa99_classI_Rep5	1	463.2908935546875	2	463.768917	925.523281	1.9607	0.00090929	1.0307	0.00047802	2.9914	0.0013873	463.76914335331657	78.69	0.41271	78.69	78.498	78.911	0					15	9	2	0	0	0	0.028476	1	8000	8000		33.516	0	1	323560	+		5649	28898	4514	4523	6838	6838					0.057540714145034144
DVVMVFKVKS	10	Unmodified	_DVVMVFKVKS_					0	0	0			REV__ENST00000565309.1_1_16:88925068-88926212:+|nuORF	REV__ENST00000565309.1_1_16:88925068-88926212:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.3458862304688	2	576.328285	1150.64202	2.5883	0.0014917	0.089588	5.1632E-05	2.6779	0.0015433	576.3284732056178	90.08	0.40508	90.08	89.977	90.382	0					14	9	2	0	0	0	0.026734	1	9653	9653		31.53	0	1	192730	+		5650	21283	4515	4524	6839	6839					0.07272102327874563
DVVNLLEKQG	10	Unmodified	_DVVNLLEKQG_					0	0	0		tr|A0A553SP65|A0A553SP65_NIACIStk1familyPASTAdomain-containingSer/ThrkinaseOS=NialliacirculansOX=1397GN=pknBPE=4SV=1	tr|A0A553SP65|A0A553SP65_NIACIStk1familyPASTAdomain-containingSer/ThrkinaseOS=NialliacirculansOX=1397GN=pknBPE=4SV=1	tr|A0A553SP65|A0A553SP65_NIACIStk1familyPASTAdomain-containingSer/ThrkinaseOS=NialliacirculansOX=1397GN=pknBPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.833984375	2	557.808771	1113.60299	2.3426	0.0013067	-0.17427	-9.7211E-05	2.1683	0.0012095	557.8086119246766	82.059	0.78931	82.059	81.776	82.565	0					40	18	3	0	0	0	0.026891	1	8476	8476		39.253	8.9351	1	3854200			5651	34007	4516	4525	6840	6840					0.05073093297869491
DVVNLLEKQG	10	Unmodified	_DVVNLLEKQG_					0	0	0		tr|A0A553SP65|A0A553SP65_NIACIStk1familyPASTAdomain-containingSer/ThrkinaseOS=NialliacirculansOX=1397GN=pknBPE=4SV=1	tr|A0A553SP65|A0A553SP65_NIACIStk1familyPASTAdomain-containingSer/ThrkinaseOS=NialliacirculansOX=1397GN=pknBPE=4SV=1	tr|A0A553SP65|A0A553SP65_NIACIStk1familyPASTAdomain-containingSer/ThrkinaseOS=NialliacirculansOX=1397GN=pknBPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	557.808771	1113.60299	0.13674	7.6276E-05	-0.55776	-0.00031113	-0.42102	-0.00023485	557.8080816005114	83.656	1.3296	82.057	81.415	82.744	-1.5988	0.09083	-0.00048185	NaN	39.253	59	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84867			5652	34007	4516	4525							0.05073093297869491
DVVNLLEKQG	10	Unmodified	_DVVNLLEKQG_					0	0	0		tr|A0A553SP65|A0A553SP65_NIACIStk1familyPASTAdomain-containingSer/ThrkinaseOS=NialliacirculansOX=1397GN=pknBPE=4SV=1	tr|A0A553SP65|A0A553SP65_NIACIStk1familyPASTAdomain-containingSer/ThrkinaseOS=NialliacirculansOX=1397GN=pknBPE=4SV=1	tr|A0A553SP65|A0A553SP65_NIACIStk1familyPASTAdomain-containingSer/ThrkinaseOS=NialliacirculansOX=1397GN=pknBPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	557.808771	1113.60299	-1.4597	-0.00081425	0.84843	0.00047326	-0.6113	-0.00034099	557.8090941031912	84.215	1.3392	81.954	81.655	82.994	-2.261	-0.012245	0.0010869	NaN	39.253	65	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	363450			5653	34007	4516	4525							0.05073093297869491
DVVNLLEKQG	10	Unmodified	_DVVNLLEKQG_					0	0	0		tr|A0A553SP65|A0A553SP65_NIACIStk1familyPASTAdomain-containingSer/ThrkinaseOS=NialliacirculansOX=1397GN=pknBPE=4SV=1	tr|A0A553SP65|A0A553SP65_NIACIStk1familyPASTAdomain-containingSer/ThrkinaseOS=NialliacirculansOX=1397GN=pknBPE=4SV=1	tr|A0A553SP65|A0A553SP65_NIACIStk1familyPASTAdomain-containingSer/ThrkinaseOS=NialliacirculansOX=1397GN=pknBPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	557.808771	1113.60299	1.6161	0.0009015	-1.9476	-0.0010864	-0.33146	-0.00018489	557.8075205591177	84.459	1.1441	81.796	81.549	82.693	-2.6629	-0.1707	-0.0020324	NaN	39.253	56	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	306650			5654	34007	4516	4525							0.05073093297869491
DVVVILCI	8	Unmodified	_DVVVILCI_					0	0	0		L1MC1_dup7132|chr8:144750012-144750846:-|1.0695587535362288|0.4006023584430365|1.42|429.0|47|2|anti-sense	L1MC1_dup7132|chr8:144750012-144750846:-|1.0695587535362288|0.4006023584430365|1.42|429.0|47|2|anti-sense	L1MC1_dup7132|chr8:144750012-144750846:-|1.0695587535362288|0.4006023584430365|1.42|429.0|47|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	437.7259216308594	2	437.259339	872.504126	0.57496	0.00025141	3.655	0.0015982	4.2299	0.0018496	437.26085112313183	58.83	0.50671	58.83	58.613	59.12	0					17	12	2	0	0	0	0.028476	1	5014	5014		15.636	0	1	506910			5655	14603	4517	4526	6841	6841					0.06277398799261391
DVWKSSKP	8	Unmodified	_DVWKSSKP_					0	0	0			REV__tr|A0A7D6VRW5|A0A7D6VRW5_9CLOTTransketolaseOS=ClostridiumintestinaleOX=36845GN=tktPE=3SV=1	REV__tr|A0A7D6VRW5|A0A7D6VRW5_9CLOTTransketolaseOS=ClostridiumintestinaleOX=36845GN=tktPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.7813415527344	2	473.753267	945.491981	0.054191	2.5673E-05	3.814	0.0018069	3.8682	0.0018326	473.75467921045356	60.636	0.59236	60.636	60.392	60.984	0					26	13	3	0	0	0	0.028476	1	5292	5292		16.473	0	1	315230	+		5656	31452	4518	4527	6842	6842					0.01705498380431436
DVWPMHAE	8	Unmodified	_DVWPMHAE_					0	0	0		ENST00000426393.5_1_1:63786855-63787154:-|nuORF;ENST00000418244.5_1_1:63786852-63787391:-|nuORF;ENST00000431294.5_1_1:63786852-63789241:-|nuORF	ENST00000426393.5_1_1:63786855-63787154:-|nuORF	ENST00000426393.5_1_1:63786855-63787154:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.8201599121094	2	492.715827	983.417102	-0.18586	-9.1574E-05	-3.9806	-0.0019613	-4.1665	-0.0020529	492.7135766275527	63.403	0.67036	59.928	59.723	60.393	-3.475					22	13	2	0	0	0	0.028476	1	4436	4436		40.573	28.366	1	58320			5657	11634	4519	4528	6843	6843					-0.07527007422459064
DVYDSGLIIP	10	Unmodified	_DVYDSGLIIP_					0	0	0			REV__tr|A0A553STB1|A0A553STB1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04720PE=4SV=1	REV__tr|A0A553STB1|A0A553STB1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04720PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	546.2847900390625	2	546.284597	1090.55464	-0.68498	-0.00037419	-0.020203	-1.1037E-05	-0.70518	-0.00038523	546.2843803119416	133.15	1.178	132.02	131.73	132.91	-1.1249					53	23	3	0	0	0	0.50656	1	10686	10686		53.351	0.41475	1	108250	+		5658	30941	4520	4529	6844	6844					0.012985996579573111
DVYNSNKNF	9	Unmodified	_DVYNSNKNF_					0	0	0		tr|A0A7D6VX91|A0A7D6VX91_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07570PE=4SV=1	tr|A0A7D6VX91|A0A7D6VX91_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07570PE=4SV=1	tr|A0A7D6VX91|A0A7D6VX91_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07570PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7639770507812	2	550.753995	1099.49344	1.007	0.00055462	3.2825	0.0018078	4.2895	0.0023624	550.7552892815612	145.82	0.34987	145.82	145.63	145.98	0					8	6	2	0	0	0	0.027441	1	17060	17060		32.812	15.447	1	15597			5659	35269	4521	4530	6845	6845					-0.052329123214803985
DVYRAEIS	8	Unmodified	_DVYRAEIS_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.V2563Sfs*5|1|0.19|ENSG00000083857|chr4:186618896-186618899|TCAC/-|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.25762939453125	2	476.740357	951.46616	-1.2356	-0.00058906	0.90501	0.00043145	-0.33058	-0.0001576	476.7404715275166	63.956	0.43707	63.956	63.773	64.21	0					15	10	3	0	0	0	0.028476	1	5771	5771		29.15	14.485	1	387910			5660	1705	4522	4531	6846	6846					-0.011513958618593279
DVYRKLIEL	9	Unmodified	_DVYRKLIEL_					0	0	0		ENST00000556502.1_1_14:60619584-60632027:-|nuORF;nc|ENSG00000100612|Q9Y394-2|DHRS7;ENSG00000100612|ENST00000557185|DHRS7;ENST00000553986.1_1_14:60616802-60619887:-|nuORF	ENST00000556502.1_1_14:60619584-60632027:-|nuORF	ENST00000556502.1_1_14:60619584-60632027:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	574.8382568359375	2	574.837331	1147.66011	-0.87533	-0.00050317	0.20724	0.00011913	-0.66808	-0.00038404	574.8373813616681	91.362	5.8049	88.819	88.449	94.254	-2.5425					226	116	5	0	0	0	0.46356	1	7969	7969		45.972	0.95004	1	3993100			5661	2091	4523	4532	6847	6847					0.09218560574208823
DVYVLITKDV	10	Unmodified	_DVYVLITKDV_					0	0	0			REV__tr|A0A553SK09|A0A553SK09_NIACIDephospho-CoAkinaseOS=NialliacirculansOX=1397GN=coaEPE=3SV=1	REV__tr|A0A553SK09|A0A553SK09_NIACIDephospho-CoAkinaseOS=NialliacirculansOX=1397GN=coaEPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.801513671875	2	582.829172	1163.64379	1.1891	0.00069307	-3.5115	-0.0020466	-2.3224	-0.0013535	583.3289071399478	149.05	0.19125	149.05	148.92	149.11	0					5	3	2	0	0	0	0.027028	1	17454	17454		18.262	3.3972	1	13238	+		5662	30062	4524	4533	6848	6848					0.06851434617465202
DVYVRYLR	8	Unmodified	_DVYVRYLR_					0	0	0		tr|A0A553SMV8|A0A553SMV8_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_23295PE=4SV=1	tr|A0A553SMV8|A0A553SMV8_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_23295PE=4SV=1	tr|A0A553SMV8|A0A553SMV8_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_23295PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.3541259765625	2	542.300916	1082.58728	-0.48179	-0.00026128	-2.0822	-0.0011292	-2.564	-0.0013904	542.2992884088304	43.334	0.20862	43.334	43.27	43.478	0					5	4	2	0	0	0	0.028476	1	2856	2856		24.203	17.89	1	40991			5663	33876	4525	4534	6849	6849					0.04928851571457926
DVYVSAKDGAM	11	Unmodified	_DVYVSAKDGAM_					0	0	0		tr|A0A7D6ZRL2|A0A7D6ZRL2_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04115PE=3SV=1	tr|A0A7D6ZRL2|A0A7D6ZRL2_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04115PE=3SV=1	tr|A0A7D6ZRL2|A0A7D6ZRL2_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04115PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.2803344726562	2	578.271164	1154.52777	1.6788	0.00097082	-3.8682	-0.0022369	-2.1894	-0.0012661	578.2687718888438	137.76	1.0019	137.76	137.11	138.11	0					35	21	2	0	0	0	0.025656	1	16056	16056		20.03	10.325	1	157650			5664	35716	4526	4535	6850	6850					-0.04330832224900405
DWAFTIIND	9	Unmodified	_DWAFTIIND_					0	0	0			REV__tr|A0A7D6ZV49|A0A7D6ZV49_9CLOTYihY/virulencefactorBrkBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02390PE=4SV=1	REV__tr|A0A7D6ZV49|A0A7D6ZV49_9CLOTYihY/virulencefactorBrkBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02390PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	548.3176879882812	2	547.761289	1093.50803	-0.73328	-0.00040166	2.9797	0.0016322	2.2464	0.0012305	547.7629030585323	73.812	1.1393	71.324	71.074	72.214	-2.4873					31	22	2	0	0	0	0.027418	1	3685	3685		49.442	19.124	1	11314	+		5665	32238	4527	4536	6851	6851					-0.034988401733244245
DWAFTIIND	9	Unmodified	_DWAFTIIND_					0	0	0			REV__tr|A0A7D6ZV49|A0A7D6ZV49_9CLOTYihY/virulencefactorBrkBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02390PE=4SV=1	REV__tr|A0A7D6ZV49|A0A7D6ZV49_9CLOTYihY/virulencefactorBrkBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02390PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	547.761289	1093.50803	-0.49539	-0.00027136	-2.7971	-0.0015321	-3.2925	-0.0018035	547.7590159308729	74.707	0.48475	71.476	71.289	71.773	-3.2308	0.075944	-0.0053919	NaN	49.442	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21012	+		5666	32238	4527	4536							-0.034988401733244245
DWEESRVH	8	Unmodified	_DWEESRVH_					0	0	0			REV__ENSG00000213886|ENST00000377050|UBD	REV__ENSG00000213886|ENST00000377050|UBD	MULTI-MSMS	OvCa99_classI_Rep5	1	529.2368774414062	2	529.238513	1056.46247	-0.47153	-0.00024955	-2.7171	-0.001438	-3.1887	-0.0016876	529.236917371675	24.061	0.35	24.061	23.937	24.287	0					13	6	3	0	0	0	0.75661	1	402	402		19.36	1.0356	1	86144	+		5667	23273	4528	4537	6852	6852					-0.06350065635706414
DWKDIKDK	8	Unmodified	_DWKDIKDK_					0	0	0			REV__L1PA2_dup23|chr1:43114528-43120516:-|1.3533449411662286|0.3152228216366226|2.1|404.0|22|1|sense;REV__nc|ENSG999|O00370|L1_ORF2	REV__nc|ENSG999|O00370|L1_ORF2	MULTI-MSMS	OvCa9_classI_Rep2	2	524.2770385742188	2	524.277106	1046.53966	0.77919	0.00040851	-1.2393	-0.00064976	-0.46015	-0.00024125	524.2763197731864	41.272	1.9717	38.562	38.093	40.065	-2.7097					88	39	4	0	0	0	0.73205	1	2188	2188		35.618	1.4457	1	944830	+		5668	29238;28478	4529	4538	6853	6853					0.01825152580613576
DWLGANQIGG	10	Unmodified	_DWLGANQIGG_					0	0	0		ENST00000281172.9_1_12:15835865-15942248:-|nuORF	ENST00000281172.9_1_12:15835865-15942248:-|nuORF	ENST00000281172.9_1_12:15835865-15942248:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	515.7584228515625	2	515.751256	1029.48796	2.3139	0.0011934	3.7952	0.0019574	6.1091	0.0031508	515.7529693220844	121.37	0.60663	121.37	121.15	121.75	0					27	13	3	0	0	0	0.55359	1	13979	13979		47.657	1.6851	1	144150			5669	10047	4530	4539	6854	6854					-0.02560591113274313
DWTHCVETSQ	10	Carbamidomethyl (C)	_DWTHC(Carbamidomethyl (C))VETSQ_	DWTHC(1)VETSQ		DWTHC(46)VETSQ		0	1	0		nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2	nc|ENSG00000134759|Q6IA86-7|ELP2	nc|ENSG00000134759|Q6IA86-7|ELP2	MULTI-MSMS	OvCa99_classI_Rep5	1	631.757568359375	2	631.758952	1261.50335	1.5947	0.0010075	-2.5586	-0.0016164	-0.96384	-0.00060891	631.7571090392981	146.02	0.69847	146.02	145.78	146.47	0					37	13	4	0	0	0	0.5675	1	17066	17066		45.972	11.8	1	417330			5670	4324	4531	4540	6855	6855	43				-0.11694092378411369
DWWQMGNGD	9	Unmodified	_DWWQMGNGD_					0	0	0			REV__tr|A0A553STM9|A0A553STM9_NIACIGlycosidehydrolasefamily28proteinOS=NialliacirculansOX=1397GN=CEQ21_05415PE=3SV=1	REV__tr|A0A553STM9|A0A553STM9_NIACIGlycosidehydrolasefamily28proteinOS=NialliacirculansOX=1397GN=CEQ21_05415PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.8317260742188	2	554.711273	1107.40799	1.5121	0.00083878	-0.40192	-0.00022295	1.1102	0.00061583	555.2128189530584	139.73	0.51614	138.23	138.05	138.56	-1.4952					12	9	2	0	0	0	0.027462	1	13651	13651		40.778	0	1	11686	+		5671	30986	4532	4541	6856	6856					-0.1414140077877164
DYAKNLAKL	9	Unmodified	_DYAKNLAKL_					0	0	0		nc|ENSG00000007237|O60861-2|GAS7;nc|ENSG00000007237|O60861-1|GAS7;nc|ENSG00000007237|O60861-4|GAS7;ENSG00000007237|ENST00000432992|GAS7	nc|ENSG00000007237|O60861-2|GAS7	nc|ENSG00000007237|O60861-2|GAS7	MULTI-MSMS	OvCa99_classI_Rep5	1	518.2969970703125	2	518.295299	1034.57605	-1.5221	-0.0007889	1.3247	0.0006866	-0.19737	-0.0001023	518.2959202506543	69.981	0.96907	69.981	69.712	70.681	0					72	23	5	0	0	0	0.025955	1	6678	6678		139.97	15.89	1	12304000			5672	897	4533	4542	6857	6857					0.060140294773418645
DYDKKKLVK	9	Unmodified	_DYDKKKLVK_					0	0	0		ENST00000488260.1_1_3:40351432-40353086:+|nuORF;ENSG00000173812|ENST00000469257|EIF1;ENSG00000114784|ENST00000232905|EIF1B;ENST00000462088.1_1_3:40351432-40352571:+|nuORF	ENST00000488260.1_1_3:40351432-40353086:+|nuORF	ENST00000488260.1_1_3:40351432-40353086:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.8590698242188	2	568.837331	1135.66011	1.1866	0.00067497	0.41526	0.00023621	1.6018	0.00091119	568.8375212095933	131.43	0.37889	131.43	131.2	131.58	0					12	7	2	0	0	0	0.027462	1	15267	15267		37.159	0	1	50004			5673	3041	4534	4543	6858	6858					0.09770560574247611
DYDNFEKSF	9	Unmodified	_DYDNFEKSF_					0	0	0			REV__tr|A0A553SK71|A0A553SK71_NIACISporulationproteinOS=NialliacirculansOX=1397GN=CEQ21_18085PE=4SV=1	REV__tr|A0A553SK71|A0A553SK71_NIACISporulationproteinOS=NialliacirculansOX=1397GN=CEQ21_18085PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.2963256835938	2	582.745836	1163.47712	1.4939	0.00087057	-2.4366	-0.0014199	-0.9427	-0.00054935	582.7443338364739	87.184	0.53324	87.184	87.013	87.546	0					17	12	2	0	0	0	0.027462	1	9272	9272		42.396	11.892	1	271090	+		5674	30084	4535	4544	6859	6859					-0.0980803827822001
DYDSVFHHL	9	Unmodified	_DYDSVFHHL_					0	0	0		nc|ENSG00000120616|Q9H2F5|EPC1;EPC1|p.A656Dfs*9|1|0.12|ENSG00000120616|chr10:32272133-32272133|G/-|frameshift_variant;ENSG00000120616|ENST00000319778|EPC1;ENST00000495790.1_1_10:32573515-32573971:-|nuORF;nc|ENSG00000120616|Q9H2F5-3|EPC1	nc|ENSG00000120616|Q9H2F5|EPC1	nc|ENSG00000120616|Q9H2F5|EPC1	MULTI-MSMS	OvCa99_classI_Rep5	1	566.758544921875	2	566.756538	1131.49852	2.2451	0.0012724	0.19028	0.00010784	2.4354	0.0013803	566.7564161831642	90.572	0.58871	90.572	90.31	90.899	0					37	14	4	0	0	0	0.13154	1	9710	9710		88.643	22.84	1	3028400			5675	14988	4536	4545	6860	6860					-0.06196608458844821
DYFFKPVLF	9	Unmodified	_DYFFKPVLF_					0	0	0		ENST00000369452.8_1_10:112723943-112724024:+|nuORF	ENST00000369452.8_1_10:112723943-112724024:+|nuORF	ENST00000369452.8_1_10:112723943-112724024:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	588.3121948242188	2	588.310418	1174.60628	0.94208	0.00055424	-0.31442	-0.00018498	0.62766	0.00036926	588.3101105223393	150.8	1.0612	150.8	150.44	151.5	0					57	20	4	0	0	0	0.14998	2	17660	17639;17660		84.916	18.486	1	759310			5676	10895	4537	4546	6861;6862	6862					0.025963881425013824
DYFSERIK	8	Unmodified	_DYFSERIK_					0	0	0		FAM111B|p.E418Gfs*12|1|0.09|ENSG00000189057|chr11:59125346-59125347|-/G|frameshift_variant;nc|ENSG00000189057|Q6SJ93-2|FAM111B;ENSG00000189057|ENST00000343597|FAM111B	FAM111B|p.E418Gfs*12|1|0.09|ENSG00000189057|chr11:59125346-59125347|-/G|frameshift_variant	FAM111B|p.E418Gfs*12|1|0.09|ENSG00000189057|chr11:59125346-59125347|-/G|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	529.2728881835938	2	529.269281	1056.52401	2.0165	0.0010673	3.3583	0.0017774	5.3748	0.0028447	529.2709143301529	110.62	2.1589	110.62	109.86	112.02	0					135	47	5	0	0	0	0.56195	1	12598	12598		71.296	4.8664	1	8549300			5677	8530	4538	4547	6863	6863					-0.0019913393641672883
DYGKETKTL	9	Unmodified	_DYGKETKTL_					0	0	0			REV__tr|A0A7D6ZYI5|A0A7D6ZYI5_9CLOTZinc-bindingdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02435PE=3SV=1	REV__tr|A0A7D6ZYI5|A0A7D6ZYI5_9CLOTZinc-bindingdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02435PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	527.7772827148438	2	527.774396	1053.53424	2.1988	0.0011605	0.77465	0.00040884	2.9735	0.0015693	527.7748288416434	94.984	1.2741	94.984	94.264	95.538	0					56	29	4	0	0	0	0.33652	1	10356	10356		58.782	3.2778	1	1414200	+		5678	32375	4539	4548	6864	6864					0.00961428998152769
DYGRCLLS	8	Unmodified	_DYGRCLLS_					0	0	0		ENST00000495397.1_1_1:161695975-161696182:+|nuORF	ENST00000495397.1_1_1:161695975-161696182:+|nuORF	ENST00000495397.1_1_1:161695975-161696182:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	462.78070068359375	2	463.723652	925.432752	2.188	0.0010146	0.81714	0.00037893	3.0051	0.0013935	463.7238811577268	110.61	0.8021	110.61	110.31	111.11	0					30	17	2	0	0	0	0.028476	1	12608	12608		71.296	18.997	1	248970			5679	12775	4540	4549	6865	6865					-0.03294720905410031
DYGYKKYI	8	Unmodified	_DYGYKKYI_					0	0	0			REV__tr|A0A7D6VNK1|A0A7D6VNK1_9CLOTProtein-glutamateO-methyltransferaseCheROS=ClostridiumintestinaleOX=36845GN=HZF06_15720PE=4SV=1	REV__tr|A0A7D6VNK1|A0A7D6VNK1_9CLOTProtein-glutamateO-methyltransferaseCheROS=ClostridiumintestinaleOX=36845GN=HZF06_15720PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	525.2681274414062	2	525.26875	1048.52295	2.124	0.0011157	-3.4206	-0.0017967	-1.2967	-0.00068109	525.2669944481736	94.803	2.1904	94.803	93.386	95.577	0					93	51	4	0	0	0	0.68714	1	10342	10342		45.952	1.8352	1	4098900	+		5680	31188	4541	4550	6866	6866					0.0006265169467951637
DYHPGQRPS	9	Unmodified	_DYHPGQRPS_					0	0	0		ENST00000301021.7_1_16:88928009-88928081:+|nuORF	ENST00000301021.7_1_16:88928009-88928081:+|nuORF	ENST00000301021.7_1_16:88928009-88928081:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.7514038085938	2	528.746505	1055.47846	0.95383	0.00050433	1.9409	0.0010262	2.8947	0.0015306	528.7476659855531	138.1	1.5687	136.57	136.03	137.59	-1.5284					55	34	2	0	0	0	0.59259	1	13479	13479		32.812	0.85756	1	30504			5681	10180	4542	4551	6867	6867					-0.04706359398801396
DYIIPKNTL	9	Unmodified	_DYIIPKNTL_					0	0	0		ENSG00000111012|ENST00000228606|CYP27B1	ENSG00000111012|ENST00000228606|CYP27B1	ENSG00000111012|ENST00000228606|CYP27B1	MULTI-MSMS	OvCa99_classI_Rep5	1	538.7986450195312	2	538.802957	1075.59136	1.0735	0.00057842	0.78921	0.00042523	1.8627	0.0010036	538.8032150275253	156.01	1.616	156.01	155.63	157.25	0					82	31	4	0	0	0	0.24951	1	18295	18295		68.787	5.253	1	307400			5682	2806	4543	4552	6868	6868					0.05658896274530889
DYIKFLRSI	9	Unmodified	_DYIKFLRSI_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF	ENSG00000116478|ENST00000373548|HDAC1	ENSG00000116478|ENST00000373548|HDAC1	MULTI-MSMS	OvCa99_classI_Rep5	1	577.8334350585938	2	577.832049	1153.64954	-0.16795	-9.7048E-05	2.2125	0.0012785	2.0445	0.0011814	577.8331276635856	114.61	0.92024	114.61	114.2	115.12	0					45	18	3	0	0	0	0.29519	1	13090	13090		63.534	1.4264	1	919560			5683	3180	4544	4553	6869	6869					0.07886577919794036
DYIKLKKFIYK	11	Unmodified	_DYIKLKKFIYK_					0	0	0		tr|A0A553SPL9|A0A553SPL9_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_26665PE=4SV=1	tr|A0A553SPL9|A0A553SPL9_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_26665PE=4SV=1	tr|A0A553SPL9|A0A553SPL9_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_26665PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.9590759277344	3	486.962151	1457.86462	-6.3941	-0.0031137	-0.27486	-0.00013385	-6.6689	-0.0032475	486.96182500070705	161.6	3.2719	159.97	158.36	161.63	-1.6239					171	80	4	0	0	0	0.72528	1	15938	15938		11.932	2.2862	1	99720			5684	34061	4545	4554	6870	6870					0.1540049966472452
DYIKNLPMW	9	Unmodified	_DYIKNLPMW_					0	0	0		ENSG00000239305|ENST00000237455|RNF103	ENSG00000239305|ENST00000237455|RNF103	ENSG00000239305|ENST00000237455|RNF103	MULTI-MSMS	OvCa99_classI_Rep5	1	590.2985229492188	2	590.296985	1178.57942	1.6852	0.00099475	0.081585	4.8159E-05	1.7668	0.0010429	590.2968379789519	126.83	0.40527	126.83	126.65	127.05	0					14	8	2	0	0	0	0.35444	1	14670	14670		56.721	9.0637	1	221130			5685	9325	4546	4555	6871	6871					-0.0027304374032155465
DYILNVMKF	9	Unmodified	_DYILNVMKF_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	OvCa99_classI_Rep5	1	571.80126953125	2	571.79936	1141.58417	1.1656	0.00066651	1.1318	0.00064717	2.2975	0.0013137	571.7998696467807	138.74	0.62268	138.74	138.4	139.03	0					28	12	3	0	0	0	0.055627	2	16185	16185;16210		115.49	51.287	1	548880			5686	1754	4547	4556	6872;6873	6872					0.01903840402451351
DYILPVKVM	9	Unmodified	_DYILPVKVM_					0	0	0		ENST00000508935.1_1_5:102509572-102509677:+|nuORF	ENST00000508935.1_1_5:102509572-102509677:+|nuORF	ENST00000508935.1_1_5:102509572-102509677:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.8270263671875	2	539.304278	1076.594	-1.3879	-0.0007485	4.3752	0.0023596	2.9873	0.0016111	539.3067805615146	93.418	1.0614	90.911	90.614	91.675	-2.5072					39	22	3	0	0	0	0.027426	1	8216	8216		63.306	19.68	1	144630			5687	12955	4548	4557	6874	6874					0.05877028407826401
DYIRKIAEAF	10	Unmodified	_DYIRKIAEAF_					0	0	0			REV__tr|A0A7D6VS62|A0A7D6VS62_9CLOTRibose-phosphatepyrophosphokinaseOS=ClostridiumintestinaleOX=36845GN=prsPE=3SV=1	REV__tr|A0A7D6VS62|A0A7D6VS62_9CLOTRibose-phosphatepyrophosphokinaseOS=ClostridiumintestinaleOX=36845GN=prsPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	613.333740234375	2	613.332413	1224.65027	2.6454	0.0016225	-0.31636	-0.00019403	2.329	0.0014285	613.3321347747326	115.75	1.1156	115.75	115.3	116.42	0					76	23	5	0	0	0	0.49595	1	13275	13275		54.722	15.47	1	5903300	+		5688	31471	4549	4558	6875	6875					0.04693372568840459
DYKMKRISYL	10	Unmodified	_DYKMKRISYL_					0	0	0		ENST00000513148.1_1_1:24144051-24147019:-|nuORF	ENST00000513148.1_1_1:24144051-24147019:-|nuORF	ENST00000513148.1_1_1:24144051-24147019:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	439.572998046875	3	439.572557	1315.69584	-0.35444	-0.0001558	3.0368	0.0013349	2.6823	0.0011791	439.57386515080725	63.418	1.7895	60.673	60.161	61.95	-2.7444					115	33	5	0	0	0	0.64697	1	4795	4795		36.447	6.129	1	527640			5689	13007	4550	4559	6876	6876					0.0506227475959804
DYKNGEHHS	9	Unmodified	_DYKNGEHHS_					0	0	0		ENSG00000168769|ENST00000380013|TET2	ENSG00000168769|ENST00000380013|TET2	ENSG00000168769|ENST00000380013|TET2	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.2616577148438	2	543.733594	1085.45264	1.1597	0.00063055	-2.0468	-0.0011129	-0.88712	-0.00048236	543.7322245772189	150.07	0.55011	150.07	149.84	150.39	0					16	10	2	0	0	0	0.027462	1	17551	17551		34.173	6.2903	1	70183			5690	6939	4551	4560	6877	6877					-0.08667253641101524
DYKRKSSYW	9	Unmodified	_DYKRKSSYW_					0	0	0			REV__ENST00000480567.5_1_1:155979355-155979385:-|nuORF	REV__ENST00000480567.5_1_1:155979355-155979385:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	616.80859375	2	616.806562	1231.59857	-0.51669	-0.0003187	3.0837	0.0019021	2.5671	0.0015834	616.8082973173707	61.759	3.6209	61.759	59.156	62.777	0					185	88	4	0	0	0	0.35444	1	5464	5464		56.721	1.9447	1	4329000	+		5691	20840	4552	4561	6878	6878					-0.007963711250340566
DYKSKQKSE	9	Unmodified	_DYKSKQKSE_					0	0	0		tr|A0A7D7A2N6|A0A7D7A2N6_9CLOTTniQfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20760PE=4SV=1	tr|A0A7D7A2N6|A0A7D7A2N6_9CLOTTniQfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20760PE=4SV=1	tr|A0A7D7A2N6|A0A7D7A2N6_9CLOTTniQfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20760PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.7929077148438	2	556.782753	1111.55095	3.3008	0.0018378	-3.2809	-0.0018268	0.019886	1.1072E-05	557.2839541668689	87.941	0.2486	87.941	87.881	88.13	0					8	5	2	0	0	0	0.027462	1	9348	9348		29.15	10.887	1	92332			5692	36087	4553	4562	6879	6879					-0.00036070115902475663
DYLEKYYKF	9	Unmodified	_DYLEKYYKF_					0	0	0		ENSG00000166741|ENST00000299964|NNMT;ENST00000546313.1_1_11:114167278-114168881:+|nuORF;NNMT|p.S29C|1|0.19|ENSG00000166741|chr11:114296642-114296642|C/G|missense_variant	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-MSMS	OvCa99_classI_Rep5	1	423.5460205078125	3	423.544773	1267.61249	2.2628	0.0009584	0.131	5.5483E-05	2.3938	0.0010139	423.54468057498747	96.977	0.6871	96.977	96.71	97.397	0					43	15	4	0	0	0	0.14855	1	10638	10638		91.265	34.633	1	1843900			5693	6706	4554	4563	6880	6880					-0.010611384166168136
DYLEKYYKF	9	Unmodified	_DYLEKYYKF_					0	0	0		ENSG00000166741|ENST00000299964|NNMT;ENST00000546313.1_1_11:114167278-114168881:+|nuORF;NNMT|p.S29C|1|0.19|ENSG00000166741|chr11:114296642-114296642|C/G|missense_variant	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-MSMS	OvCa99_classI_Rep5	1	634.8153076171875	2	634.813522	1267.61249	2.4019	0.0015247	-0.25621	-0.00016265	2.1457	0.0013621	634.813355752859	96.985	1.7504	96.985	96.668	98.419	0					116	40	5	0	0	0	0.03923	2	10642	10642;10673		127.46	23.405	1	19244000			5694	6706	4554	4563	6881;6882	6881					-0.010611384166168136
DYLHLPPEIV	10	Unmodified	_DYLHLPPEIV_					0	0	0		ENST00000477729.1_1_15:60696796-60696997:+|nuORF;ENST00000480942.1_1_6:34392413-34392935:-|nuORF;ENST00000439253.1_1_9:90631298-90631598:+|nuORF;ENST00000408001.1_1_6:34712123-34712447:+|nuORF;chr6:34425221-34425583|429|46.7|0.0|22.16|-|ENST00000494077|RPS10-NUDT3,RPS10;ENSG00000124614|ENST00000648437|RPS10;nc|ENSG00000101278|Q9NQ39|RPS10P5;ENST00000430953.1_1_20:14738267-14738540:+|nuORF;ENST00000468490.1_1_5:50571220-50571544:+|nuORF	ENST00000477729.1_1_15:60696796-60696997:+|nuORF	ENST00000477729.1_1_15:60696796-60696997:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	598.3217163085938	2	598.321514	1194.62847	4.0482	0.0024221	-3.3757	-0.0020198	0.67253	0.00040239	598.3194309070321	131.19	0.94769	129.71	129.35	130.3	-1.4779					34	19	4	0	0	0	0.55359	1	12616	12616		47.657	3.5405	1	45469			5695	516	4555	4564	6883	6883					0.03894567820270822
DYLKGVASL	9	Unmodified	_DYLKGVASL_					0	0	0		ENSG00000135740|ENST00000299798|SLC9A5	ENSG00000135740|ENST00000299798|SLC9A5	ENSG00000135740|ENST00000299798|SLC9A5	MULTI-MSMS	OvCa99_classI_Rep5	1	483.2691955566406	2	483.26875	964.522947	2.1556	0.0010417	-0.43918	-0.00021224	1.7164	0.00082948	483.2684257119935	137.04	1.0943	137.04	136.73	137.82	0					60	22	4	0	0	0	0.21231	1	15960	15960		74.255	0.28031	1	2138000			5696	4410	4556	4565	6884	6884					0.03926651694678185
DYLKRFYLY	9	Unmodified	_DYLKRFYLY_					0	0	0		ENST00000531200.1_1_11:102398162-102401431:-|nuORF;ENST00000533366.5_1_11:102395628-102401431:-|nuORF;ENSG00000137673|ENST00000260227|MMP7	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	ENST00000531200.1_1_11:102398162-102401431:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	640.839111328125	2	640.837331	1279.66011	2.0522	0.0013151	-0.2021	-0.00012951	1.8501	0.0011856	640.8370913791765	106.83	1.6653	106.83	106.49	108.16	0					106	38	5	0	0	0	0.030815	3	12034	12012;12034;12067		134.81	44.034	1	17054000			5697	4606	4557	4566	6885;6886;6887	6886					0.03146560574236901
DYLLTRLL	8	Unmodified	_DYLLTRLL_					0	0	0		nc|ENSG00000172478|Q08AI8-3|MAB21L4;nc|ENSG00000172478|Q08AI8-2|MAB21L4;ENSG00000172478|ENST00000388934|MAB21L4	REV__tr|A0A553SHZ4|A0A553SHZ4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13855PE=4SV=1	REV__tr|A0A553SHZ4|A0A553SHZ4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13855PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	503.8014831542969	2	503.800217	1005.58588	1.4382	0.00072454	0.74828	0.00037698	2.1864	0.0011015	503.8002211590327	109.15	0.52499	109.15	108.89	109.41	0					26	11	3	0	0	0	0.56195	1	12361	12361		71.296	2.811	1	774960			5698	29855	4558	4567	6888	6888					0.08331217482702868
DYLRWVQTL	9	Unmodified	_DYLRWVQTL_					0	0	0		ENSG00000130203|ENST00000252486|APOE;CON__Q03247	ENSG00000130203|ENST00000252486|APOE	ENSG00000130203|ENST00000252486|APOE	MULTI-MSMS	OvCa99_classI_Rep5	1	597.3218383789062	2	597.319306	1192.62406	2.0259	0.0012101	0.52985	0.00031649	2.5558	0.0015266	597.319463262761	134.45	0.97684	134.45	134.15	135.13	0					60	21	4	0	0	0	0.011767	2	15639	15639;15662		163.15	66.961	1	2497400			5699	3967	4559	4568	6889;6890	6889					0.03545103397368621
DYMGVLIKL	9	Unmodified	_DYMGVLIKL_					0	0	0			REV__nc|ENSG00000050820|P56945-6|BCAR1	REV__nc|ENSG00000050820|P56945-6|BCAR1	MULTI-MSMS	OvCa99_classI_Rep5	1	526.2986450195312	2	526.296453	1050.57835	1.141	0.0006005	0.42703	0.00022475	1.568	0.00082525	526.2964776203653	111.83	0.87179	111.83	111.42	112.3	0					37	18	3	0	0	0	0.40667	1	12709	12709		51.335	0	1	390860	+		5700	28716	4560	4569	6891	6891					0.055087418907760366
DYMKTTSNF	9	Unmodified	_DYMKTTSNF_					0	0	0		nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF	nc|ENSG00000165525|O60524-4|NEMF	nc|ENSG00000165525|O60524-4|NEMF	MULTI-MSMS	OvCa99_classI_Rep5	1	553.7457275390625	2	553.744782	1105.47501	0.69641	0.00038563	0.086594	4.7951E-05	0.783	0.00043358	553.7446628430197	74.384	1.2723	74.384	74.135	75.407	0					70	31	4	0	0	0	0.024645	2	7339	7339;7368		141.52	67.265	1	14897000			5701	6574	4561	4570	6892;6893	6892					-0.07350790287682685
DYMPMSPASVS	11	Unmodified	_DYMPMSPASVS_					0	0	0		ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	591.806396484375	2	592.75175	1183.48895	0.91602	0.00054297	-0.5352	-0.00031724	0.38082	0.00022573	592.7514422020104	132.36	0.70697	132.36	131.95	132.65	0					22	14	2	0	0	0	0.02557	1	15384	15384		31.53	10.583	1	47676			5702	8303	4562	4571	6894	6894					-0.09545880850896538
DYMQRCTNEL	10	Unmodified	_DYMQRCTNEL_					0	0	0		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-SECPEP	OvCa9_classI_Rep2	2	424.91015625	3	424.849762	1271.52746	0.51745	0.00021984	-1.1155	-0.00047393	-0.59807	-0.00025409	424.84985986286864	65.196	0.46536	62.472	62.076	62.541	-2.7246					12	8	2	0	0	0	0.026856	1	4989	4989		41.08	0	1	9268.1			5703	3330	4563	4572	6895	6895					-0.09744575216382145
DYPLRVLYCGV	11	Unmodified	_DYPLRVLYCGV_					0	0	0		ENST00000539463.1_1_12:123238248-123247514:+|nuORF;ENSG00000139726|ENST00000280557|DENR	ENST00000539463.1_1_12:123238248-123247514:+|nuORF	ENST00000539463.1_1_12:123238248-123247514:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	433.2273864746094	3	433.225158	1296.65364	0.13254	5.7418E-05	2.7463	0.0011898	2.8789	0.0012472	433.2263107190423	56.142	0.57732	56.142	55.845	56.422	0					43	13	4	0	0	0	0.66539	1	4628	4628		38.714	5.1725	1	2100100			5704	4801	4564	4573	6896	6896					0.017182993512051326
DYPSKMEYF	9	Unmodified	_DYPSKMEYF_					0	0	0		nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	MULTI-MSMS	OvCa99_classI_Rep5	1	590.2568359375	2	590.254982	1178.49541	3.5261	0.0020813	-1.308	-0.00077206	2.2181	0.0013092	590.2541696103509	97.65	0.59877	97.65	97.438	98.037	0					27	13	3	0	0	0	0.44568	1	10736	10736		47.657	13.485	1	688160			5705	1689	4565	4574	6897	6897					-0.0866961962788082
DYQFINER	8	Unmodified	_DYQFINER_					0	0	0			REV__ENSG00000071991|ENST00000262150|CDH19	REV__ENSG00000071991|ENST00000262150|CDH19	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.7835083007812	2	542.756538	1083.49852	-0.66544	-0.00036117	-1.7555	-0.00095283	-2.421	-0.001314	542.7558012195622	52.057	0.34657	52.057	51.912	52.259	0					12	7	2	0	0	0	0.028476	1	4072	4072		27.882	0	1	118640	+		5706	16907	4566	4575	6898	6898					-0.0398860845884883
DYQGRSTGEAF	11	Unmodified	_DYQGRSTGEAF_					0	0	0		ENST00000469172.5_1_10:70097616-70097877:+|nuORF;nc|ENSG00000096746|P31942-2|HNRNPH3;ENSG00000096746|ENST00000265866|HNRNPH3;nc|ENSG00000096746|P31942-3|HNRNPH3	ENST00000469172.5_1_10:70097616-70097877:+|nuORF	ENST00000469172.5_1_10:70097616-70097877:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	615.7742919921875	2	615.772916	1229.53128	-0.52343	-0.00032231	0.35094	0.0002161	-0.17248	-0.00010621	615.7729641372896	61.757	0.66422	61.757	61.501	62.165	0					49	15	4	0	0	0	0.20674	1	5459	5459		79.07	16.963	1	4064500			5707	1951	4567	4576	6899	6899					-0.07430446126659263
DYQGRSTGEAF	11	Unmodified	_DYQGRSTGEAF_					0	0	0		ENST00000469172.5_1_10:70097616-70097877:+|nuORF;nc|ENSG00000096746|P31942-2|HNRNPH3;ENSG00000096746|ENST00000265866|HNRNPH3;nc|ENSG00000096746|P31942-3|HNRNPH3	ENST00000469172.5_1_10:70097616-70097877:+|nuORF	ENST00000469172.5_1_10:70097616-70097877:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	615.772916	1229.53128	-0.51115	-0.00031475	0.49028	0.0003019	-0.020869	-1.285E-05	615.7730197761708	65.635	0.72794	62.15	61.889	62.617	-3.4854	0.19644	9.6749E-05	NaN	79.07	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113250			5708	1951	4567	4576							-0.07430446126659263
DYQRRLLN	8	Unmodified	_DYQRRLLN_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3	REV__nc|ENSG00000198838|Q15413-2|RYR3	MULTI-MSMS	OvCa99_classI_Rep5	1	539.2962036132812	2	539.293622	1076.57269	0.87242	0.00047049	3.9588	0.0021349	4.8312	0.0026054	539.2954825927297	132.38	0.71063	132.38	132.13	132.84	0					26	14	3	0	0	0	0.57734	1	15382	15382		68.787	8.6686	1	279660	+		5709	23074	4568	4577	6900	6900					0.0374677942334074
DYQRRLLN	8	Unmodified	_DYQRRLLN_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3	REV__nc|ENSG00000198838|Q15413-2|RYR3	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	539.293622	1076.57269	0.87242	0.00047049	3.9588	0.0021349	4.8312	0.0026054	539.2954825927297	132.38	0.71063	132.38	132.13	132.84	0	0	0	NaN	68.787	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279660	+		5710	23074	4568	4577							0.0374677942334074
DYRAQSMPV	9	Unmodified	_DYRAQSMPV_					0	0	0		nc|ENSG00000100578|Q9BVV6-4|KIAA0586;nc|ENSG00000100578|Q9BVV6-3|KIAA0586	nc|ENSG00000100578|Q9BVV6-4|KIAA0586	nc|ENSG00000100578|Q9BVV6-4|KIAA0586	MULTI-MSMS	OvCa99_classI_Rep5	1	533.7550659179688	2	533.752941	1065.49133	1.5843	0.0008456	0.89681	0.00047867	2.4811	0.0013243	533.7532118440084	148.37	0.73904	148.37	148.03	148.77	0					38	14	4	0	0	0	0.16562	1	17370	17370		82.241	15.811	1	463100			5711	14928	4569	4578	6901	6901					-0.038796643309296996
DYRSLKTQY	9	Unmodified	_DYRSLKTQY_					0	0	0		nc|ENSG00000184056|Q9H267-2|VPS33B;ENSG00000184056|ENST00000333371|VPS33B	nc|ENSG00000184056|Q9H267-2|VPS33B	nc|ENSG00000184056|Q9H267-2|VPS33B	MULTI-MSMS	OvCa9_classI_Rep2	2	587.2943115234375	2	587.29857	1172.58259	-1.7713	-0.0010403	-4.2549	-0.0024989	-6.0262	-0.0035392	587.2959419520926	118.58	1.9781	118.43	118.08	120.06	-0.14754					123	39	5	0	0	0	0.49652	1	11397	11397		42.864	3.6114	1	499840			5712	8127	4570	4579	6902	6902					0.0031992263807296695
DYSEFLGVA	9	Unmodified	_DYSEFLGVA_					0	0	0			REV__ENSG00000145740|ENST00000396591|SLC30A5	REV__ENSG00000145740|ENST00000396591|SLC30A5	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.73040771484375	2	500.73474	999.454927	-0.19642	-9.8356E-05	-4.1619	-0.002084	-4.3583	-0.0021823	500.73182037322005	122.32	1.0502	120.95	120.65	121.7	-1.3666					48	20	3	0	0	0	0.53957	1	11553	11553		38.806	1.647	1	68046	+		5713	19981	4571	4580	6903	6903					-0.04482217955990109
DYSEFLGVA	9	Unmodified	_DYSEFLGVA_					0	0	0			REV__ENSG00000145740|ENST00000396591|SLC30A5	REV__ENSG00000145740|ENST00000396591|SLC30A5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	500.73474	999.454927	-1.2219	-0.00061183	-4.702	-0.0023545	-5.9239	-0.0029663	500.73221988333296	121.33	0.84064	121.13	120.8	121.64	-0.19718	0.12898	0.0016999	NaN	38.806	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27245	+		5714	19981	4571	4580							-0.04482217955990109
DYSFTQVYN	9	Unmodified	_DYSFTQVYN_					0	0	0		ENSG00000108231|ENST00000371418|LGI1;nc|ENSG00000108231|O95970-3|LGI1	ENSG00000108231|ENST00000371418|LGI1	ENSG00000108231|ENST00000371418|LGI1	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.810302734375	2	568.748379	1135.4822	-0.3776	-0.00021476	-2.3675	-0.0013465	-2.7452	-0.0015613	568.7467983309051	114.77	1.0855	113.71	113.4	114.49	-1.055					48	21	3	0	0	0	0.027462	1	8456	8456		32.812	0	1	141920			5715	2640	4572	4581	6904	6904					-0.08011734415595129
DYSFTQVYN	9	Unmodified	_DYSFTQVYN_					0	0	0		ENSG00000108231|ENST00000371418|LGI1;nc|ENSG00000108231|O95970-3|LGI1	ENSG00000108231|ENST00000371418|LGI1	ENSG00000108231|ENST00000371418|LGI1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	568.748379	1135.4822	-0.22816	-0.00012977	-2.8124	-0.0015996	-3.0406	-0.0017293	568.7464787513454	114.1	1.1839	113.98	113.57	114.75	-0.11777	0.17535	0.00019524	NaN	32.812	50	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105520			5716	2640	4572	4581							-0.08011734415595129
DYSGYLPFF	9	Unmodified	_DYSGYLPFF_					0	0	0			REV__tr|A0A7D6ZFJ2|A0A7D6ZFJ2_9CLOTFibronectintypeIIIdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18125PE=4SV=1	REV__tr|A0A7D6ZFJ2|A0A7D6ZFJ2_9CLOTFibronectintypeIIIdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18125PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	554.7537841796875	2	554.752933	1107.49131	0.85438	0.00047397	1.3434	0.00074527	2.1978	0.0012192	554.7535588702533	151.84	0.46535	151.84	151.6	152.07	0					23	9	4	0	0	0	0.52083	1	17786	17786		40.573	3.4135	1	87718	+		5717	31971	4573	4582	6905	6905					-0.05813341059274535
DYSLHHISQ	9	Unmodified	_DYSLHHISQ_					0	0	0		ENSG00000105131|ENST00000221730|EPHX3	ENSG00000105131|ENST00000221730|EPHX3	ENSG00000105131|ENST00000221730|EPHX3	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.2925415039062	2	550.261988	1098.50942	-0.26817	-0.00014756	1.0354	0.00056973	0.76721	0.00042216	550.2625632305867	73.499	0.59203	73.499	73.276	73.868	0					20	14	2	0	0	0	0.027446	1	7240	7240		60.118	17.722	1	590850			5718	2423	4574	4583	6906	6906					-0.035892060845753804
DYSSILQKF	9	Unmodified	_DYSSILQKF_					0	0	0		FNBP1|p.Q503Pfs*31|1|0.07|ENSG00000187239|chr9:129900470-129900471|-/GA|frameshift_variant;nc|ENSG00000187239|Q96RU3-4|FNBP1;nc|ENSG00000187239|Q96RU3-3|FNBP1;nc|ENSG00000187239|Q96RU3-5|FNBP1;nc|ENSG00000187239|Q96RU3-2|FNBP1;ENSG00000187239|ENST00000446176|FNBP1	FNBP1|p.Q503Pfs*31|1|0.07|ENSG00000187239|chr9:129900470-129900471|-/GA|frameshift_variant	FNBP1|p.Q503Pfs*31|1|0.07|ENSG00000187239|chr9:129900470-129900471|-/GA|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	550.7859497070312	2	550.784764	1099.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.91	1	120.91	120.41	121.41	0								0	0	0	0.0014536	1	13904	13904		157.33	31.515	1				5719	8394	4575	4584	6907	6907					0.009180193778320245
DYSSILQKF	9	Unmodified	_DYSSILQKF_					0	0	0		FNBP1|p.Q503Pfs*31|1|0.07|ENSG00000187239|chr9:129900470-129900471|-/GA|frameshift_variant;nc|ENSG00000187239|Q96RU3-4|FNBP1;nc|ENSG00000187239|Q96RU3-3|FNBP1;nc|ENSG00000187239|Q96RU3-5|FNBP1;nc|ENSG00000187239|Q96RU3-2|FNBP1;ENSG00000187239|ENST00000446176|FNBP1	FNBP1|p.Q503Pfs*31|1|0.07|ENSG00000187239|chr9:129900470-129900471|-/GA|frameshift_variant	FNBP1|p.Q503Pfs*31|1|0.07|ENSG00000187239|chr9:129900470-129900471|-/GA|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	550.7860107421875	2	550.784764	1099.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.09	1	121.09	120.59	121.59	0								0	0	0	8.8727E-09	1	13927	13927		186.09	47.264	1				5720	8394	4575	4584	6908	6908					0.009180193778320245
DYSSILQKF	9	Unmodified	_DYSSILQKF_					0	0	0		FNBP1|p.Q503Pfs*31|1|0.07|ENSG00000187239|chr9:129900470-129900471|-/GA|frameshift_variant;nc|ENSG00000187239|Q96RU3-4|FNBP1;nc|ENSG00000187239|Q96RU3-3|FNBP1;nc|ENSG00000187239|Q96RU3-5|FNBP1;nc|ENSG00000187239|Q96RU3-2|FNBP1;ENSG00000187239|ENST00000446176|FNBP1	FNBP1|p.Q503Pfs*31|1|0.07|ENSG00000187239|chr9:129900470-129900471|-/GA|frameshift_variant	FNBP1|p.Q503Pfs*31|1|0.07|ENSG00000187239|chr9:129900470-129900471|-/GA|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	550.7864990234375	2	550.784764	1099.55498	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.29	1	121.29	120.79	121.79	0								0	0	0	0.023656	1	13952	13952		98.629	24.374	1				5721	8394	4575	4584	6909	6909					0.009180193778320245
DYTILLHNI	9	Unmodified	_DYTILLHNI_					0	0	0		ENSG00000079257|ENST00000264265|LXN	ENSG00000079257|ENST00000264265|LXN	ENSG00000079257|ENST00000264265|LXN	MULTI-MSMS	OvCa99_classI_Rep5	1	551.3020629882812	2	551.300581	1100.58661	1.4708	0.00081085	1.1231	0.00061916	2.5939	0.00143	551.3011848103644	127.57	0.77418	127.57	127.32	128.09	0					40	16	4	0	0	0	0.030815	2	14759	14759;14784		134.81	55.747	1	849790			5722	1608	4576	4585	6910;6911	6910					0.04034012131751297
DYVEGLRVF	9	Unmodified	_DYVEGLRVF_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-MSMS	OvCa99_classI_Rep5	1	549.2854614257812	2	549.284931	1096.55531	1.1959	0.00065689	0.32323	0.00017754	1.5191	0.00083443	549.2851249095758	119.17	1.0634	119.17	118.81	119.88	0					74	24	5	0	0	0	0.022645	2	13680	13656;13680		143.89	61.582	1	12749000			5723	1901;14919	4577	4586	6912;6913	6913					0.010894390976773138
DYVGFKLKQ	9	Unmodified	_DYVGFKLKQ_					0	0	0			REV__ENSG00000085719|ENST00000517490|CPNE3	REV__ENSG00000085719|ENST00000517490|CPNE3	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.3034057617188	2	549.303124	1096.5917	3.901	0.0021428	-3.9424	-0.0021655	-0.041346	-2.2712E-05	549.3007619235728	131.73	1.2478	130.23	129.94	131.19	-1.5015					44	24	4	0	0	0	0.64427	1	12681	12681		26.693	1.1189	1	54157	+		5724	17138	4578	4587	6914	6914					0.04726315994366814
DYVSVAAFQVM	11	Unmodified	_DYVSVAAFQVM_					0	0	0		ENST00000471466.5_1_5:176728746-176728995:-|nuORF;ENSG00000169228|ENST00000303251|RAB24	ENST00000471466.5_1_5:176728746-176728995:-|nuORF	ENST00000471466.5_1_5:176728746-176728995:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	410.53271484375	3	410.53388	1228.57981	0.36164	0.00014847	-3.518	-0.0014443	-3.1564	-0.0012958	410.5323835361665	35.028	1.0278	35.028	34.818	35.846	0					52	21	6	0	0	0	0.55686	1	1733	1733		48.602	2.6934	1	1840000			5725	6990	4579	4588	6915	6915					-0.025336688111337935
DYVVLPSKM	9	Unmodified	_DYVVLPSKM_					0	0	0		TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.2791137695312	2	526.27826	1050.54197	1.0168	0.0005351	-1.0062	-0.00052956	0.010524	5.5387E-06	526.2776221415979	138.46	0.94669	136.93	136.6	137.54	-1.5284					33	20	2	0	0	0	0.56889	1	13493	13493		35.618	1.4457	1	36892			5726	36288	4580	4589	6916	6916					0.018718649940637988
EAAAEAVKLN	10	Unmodified	_EAAAEAVKLN_					0	0	0		nc|ENSG00000159921|Q9Y223-5|GNE;nc|ENSG00000159921|Q9Y223-4|GNE;nc|ENSG00000159921|Q9Y223-3|GNE;ENSG00000159921|ENST00000642385|GNE;nc|ENSG00000159921|Q9Y223-2|GNE	nc|ENSG00000159921|Q9Y223-5|GNE	nc|ENSG00000159921|Q9Y223-5|GNE	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.8009948730469	2	508.274564	1014.53457	0.14419	7.3286E-05	1.1848	0.00060222	1.329	0.0006755	508.2748489061027	46.566	0.65066	46.566	46.112	46.762	0					17	14	2	0	0	0	0.026681	1	3318	3318		36.447	0	1	93295			5727	6034	4581	4590	6917	6917					0.02788848718000736
EAAAFDSDES	10	Unmodified	_EAAAFDSDES_					0	0	0		ENSG00000113645|ENST00000265293|WWC1;nc|ENSG00000113645|Q8IX03-2|WWC1	ENSG00000113645|ENST00000265293|WWC1	ENSG00000113645|ENST00000265293|WWC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.2904052734375	2	521.204001	1040.39345	-0.78231	-0.00040774	-4.0015	-0.0020856	-4.7838	-0.0024933	521.2015151089479	103.47	0.57341	101.35	101.17	101.75	-2.1192					14	10	2	0	0	0	0.026802	1	9334	9334		34.173	5.023	1	10673			5728	2986	4582	4591	6918	6918					-0.1251319444593264
EAAAFDSDES	10	Unmodified	_EAAAFDSDES_					0	0	0		ENSG00000113645|ENST00000265293|WWC1;nc|ENSG00000113645|Q8IX03-2|WWC1	ENSG00000113645|ENST00000265293|WWC1	ENSG00000113645|ENST00000265293|WWC1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	521.204001	1040.39345	-0.16281	-8.4857E-05	-4.7485	-0.0024749	-4.9113	-0.0025598	521.2012747718318	102.93	0.62759	101.4	101.15	101.78	-1.5211	0.024961	-0.00031733	NaN	26.693	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11472			5729	2986	4582	4591							-0.1251319444593264
EAAAGLGARL	10	Unmodified	_EAAAGLGARL_					0	0	0		ENSG00000063515|ENST00000086933|GSC2	ENSG00000063515|ENST00000086933|GSC2	ENSG00000063515|ENST00000086933|GSC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.7538757324219	2	464.764166	927.513779	-1.1098	-0.00051579	1.2368	0.00057484	0.12707	5.9058E-05	464.7646250571224	53.738	1.0731	50.491	50.161	51.234	-3.2474					37	20	2	0	0	0	0.026936	1	3260	3260		84.916	27.104	1	257470			5730	1289	4583	4592	6919	6919					0.047123031289856954
EAAAGLGARL	10	Unmodified	_EAAAGLGARL_					0	0	0		ENSG00000063515|ENST00000086933|GSC2	ENSG00000063515|ENST00000086933|GSC2	ENSG00000063515|ENST00000086933|GSC2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	464.764166	927.513779	-1.2144	-0.0005644	0.87197	0.00040526	-0.3424	-0.00015913	464.7644846086922	53.643	0.79641	50.829	50.529	51.325	-2.8139	0.16912	-0.00022631	NaN	84.916	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36941			5731	1289	4583	4592							0.047123031289856954
EAAALGKLMGV	11	Unmodified	_EAAALGKLMGV_					0	0	0		ENST00000320560.12_1_12:45825520-45825574:+|nuORF	ENST00000320560.12_1_12:45825520-45825574:+|nuORF	ENST00000320560.12_1_12:45825520-45825574:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	530.2988891601562	2	530.296985	1058.57942	-0.044695	-2.3702E-05	3.3836	0.0017943	3.3389	0.0017706	530.2986629314781	30.396	1.3311	27.686	27.458	28.789	-2.7097					67	26	4	0	0	0	0.61983	1	837	837		42.864	10.052	1	398640			5732	10366	4584	4593	6920	6920					0.052469562596797914
EAAAQEEKEI	10	Unmodified	_EAAAQEEKEI_					0	0	0			REV__ENST00000437336.1_1_1:154350783-154351305:-|nuORF	REV__ENST00000437336.1_1_1:154350783-154351305:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	559.7739868164062	2	559.272218	1116.52988	3.056	0.0017092	-3.0812	-0.0017232	-0.025129	-1.4054E-05	559.2703716913032	100.85	1.2891	100.85	100.4	101.69	0					77	30	4	0	0	0	0.47142	1	11190	11190		58.23	1.5089	1	2505200	+		5733	21337	4585	4594	6921	6921					-0.023720802154230114
EAAAQEEKEI	10	Unmodified	_EAAAQEEKEI_					0	0	0			REV__ENST00000437336.1_1_1:154350783-154351305:-|nuORF	REV__ENST00000437336.1_1_1:154350783-154351305:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	559.272218	1116.52988	3.056	0.0017092	-3.0812	-0.0017232	-0.025129	-1.4054E-05	559.2703716913032	100.85	1.2891	100.85	100.4	101.69	0	0	0	NaN	58.23	77	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2505200	+		5734	21337	4585	4594							-0.023720802154230114
EAADDKSVAK	10	Unmodified	_EAADDKSVAK_					0	0	0		ENSG00000146282|ENST00000369536|RARS2	ENSG00000146282|ENST00000369536|RARS2	ENSG00000146282|ENST00000369536|RARS2	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.7977294921875	2	517.261653	1032.50875	0.29778	0.00015403	-2.6882	-0.0013905	-2.3904	-0.0012365	517.2601190095502	110.13	0.44454	109.96	109.66	110.11	-0.17237					14	8	2	0	0	0	0.026867	1	10372	10372		35.152	0	1	14525			5735	5282	4586	4595	6922	6922					-0.006200455242833414
EAAEDVLTII	10	Unmodified	_EAAEDVLTII_					0	0	0			REV__tr|A0A7D7A094|A0A7D7A094_9CLOTLysRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_09410PE=3SV=1	REV__tr|A0A7D7A094|A0A7D7A094_9CLOTLysRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_09410PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	537.2913208007812	2	537.289879	1072.56521	0.23063	0.00012392	0.49007	0.00026331	0.7207	0.00038722	537.2899516417791	129.48	0.78999	129.25	128.92	129.71	-0.22696					30	15	3	0	0	0	0.5675	1	12721	12721		45.972	1.5951	1	48791	+		5736	32442	4587	4596	6923	6923					0.03182582312388149
EAAEGSAAPAL	11	Unmodified	_EAAEGSAAPAL_					0	0	0		ENST00000535430.1_12:122612431-122612782:+|nuORF	ENST00000535430.1_12:122612431-122612782:+|nuORF	ENST00000535430.1_12:122612431-122612782:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.786376953125	2	493.743096	985.47164	1.1114	0.00054873	-2.0356	-0.001005	-0.92418	-0.00045631	493.74213359995264	122.32	0.99709	121.29	121.01	122	-1.0286					32	18	3	0	0	0	0.025521	1	9434	9434		54.776	0	1	74858			5737	13377	4588	4597	6924	6924					-0.021677170700627357
EAAEKLKNR	9	Unmodified	_EAAEKLKNR_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.3215942382812	2	529.80128	1057.58801	-0.083842	-4.442E-05	1.5728	0.00083328	1.489	0.00078886	529.801288835664	33.158	0.53991	33.158	32.844	33.384	0					17	10	2	0	0	0	0.027426	1	1486	1486		66.429	5.4573	1	42091			5738	2042	4589	4598	6925	6925					0.06151646220496332
EAAEKVLAL	9	Unmodified	_EAAEKVLAL_					0	0	0			REV__tr|A0A553SP98|A0A553SP98_NIACIPutativecysteineligaseBshCOS=NialliacirculansOX=1397GN=bshCPE=3SV=1	REV__tr|A0A553SP98|A0A553SP98_NIACIPutativecysteineligaseBshCOS=NialliacirculansOX=1397GN=bshCPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	472.27740478515625	2	472.276575	942.538597	1.4254	0.00067316	0.46987	0.00022191	1.8952	0.00089507	472.2767138681909	83.14	0.80592	83.14	82.865	83.671	0					40	18	3	0	0	0	0.1149	2	8629	8629;8652		93.143	0	1	2456800	+		5739	30517	4590	4599	6926;6927	6926					0.06502938211713172
EAAEKVLAL	9	Unmodified	_EAAEKVLAL_					0	0	0			REV__tr|A0A553SP98|A0A553SP98_NIACIPutativecysteineligaseBshCOS=NialliacirculansOX=1397GN=bshCPE=3SV=1	REV__tr|A0A553SP98|A0A553SP98_NIACIPutativecysteineligaseBshCOS=NialliacirculansOX=1397GN=bshCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	472.2773132324219	2	472.276575	942.538597	-0.50119	-0.0002367	0.051527	2.4335E-05	-0.44966	-0.00021236	472.2765411031849	85.686	1.8581	83.466	83.134	84.992	-2.2204					85	36	4	0	0	0	0.075543	3	5047	5047;5052;5060		104.06	0	1	1164300	+		5740	30517	4590	4599	6928;6929;6930	6928					0.06502938211713172
EAAEKVLAL	9	Unmodified	_EAAEKVLAL_					0	0	0			REV__tr|A0A553SP98|A0A553SP98_NIACIPutativecysteineligaseBshCOS=NialliacirculansOX=1397GN=bshCPE=3SV=1	REV__tr|A0A553SP98|A0A553SP98_NIACIPutativecysteineligaseBshCOS=NialliacirculansOX=1397GN=bshCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.2781982421875	2	472.276575	942.538597	1.9894	0.00093956	-3.1928	-0.0015079	-1.2034	-0.00056833	472.27494541106154	86.348	1.6386	83.714	83.256	84.895	-2.6334					75	32	4	0	0	0	0.1944	1	7316	7316		77.318	0	1	972950	+		5741	30517	4590	4599	6931	6931					0.06502938211713172
EAAEKVLAL	9	Unmodified	_EAAEKVLAL_					0	0	0			REV__tr|A0A553SP98|A0A553SP98_NIACIPutativecysteineligaseBshCOS=NialliacirculansOX=1397GN=bshCPE=3SV=1	REV__tr|A0A553SP98|A0A553SP98_NIACIPutativecysteineligaseBshCOS=NialliacirculansOX=1397GN=bshCPE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	472.276575	942.538597	1.4254	0.00067316	0.46987	0.00022191	1.8952	0.00089507	472.2767138681909	83.14	0.80592	83.14	82.865	83.671	0	-0.16272	0.00027936	NaN	104.06	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2456800	+		5742	30517	4590	4599							0.06502938211713172
EAAEKVLAL	9	Unmodified	_EAAEKVLAL_					0	0	0			REV__tr|A0A553SP98|A0A553SP98_NIACIPutativecysteineligaseBshCOS=NialliacirculansOX=1397GN=bshCPE=3SV=1	REV__tr|A0A553SP98|A0A553SP98_NIACIPutativecysteineligaseBshCOS=NialliacirculansOX=1397GN=bshCPE=3SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	472.276575	942.538597	-0.50119	-0.0002367	0.051527	2.4335E-05	-0.44966	-0.00021236	472.2765411031849	85.686	1.8581	83.466	83.134	84.992	-2.2204	0.16272	-0.00011579	NaN	104.06	85	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1164300	+		5743	30517	4590	4599							0.06502938211713172
EAAETWPGTIL	11	Unmodified	_EAAETWPGTIL_					0	0	0			REV__ENST00000574951.5_1_17:4872053-4885503:-|nuORF	REV__ENST00000574951.5_1_17:4872053-4885503:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	594.298583984375	2	594.300778	1186.587	-1.0714	-0.00063671	-2.8884	-0.0017166	-3.9598	-0.0023533	594.299039734462	75.518	2.2821	73.664	72.913	75.195	-1.854					147	43	5	0	0	0	0.31264	1	6197	6197		67.494	0.57347	1	1939700	+		5744	17892	4591	4600	6932	6932					0.0011738706095911766
EAAEVTRKV	9	Unmodified	_EAAEVTRKV_					0	0	0		DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	502.2377014160156	2	501.782556	1001.55056	-0.89489	-0.00044904	0.67465	0.00033853	-0.22024	-0.00011051	501.78265998280625	46.133	0.64449	43.423	43.15	43.794	-2.7097					18	12	2	0	0	0	0.027462	1	2730	2730		35.618	0	1	14496			5745	767	4592	4601	6933	6933					0.04984554954921805
EAAKQNGVL	9	Unmodified	_EAAKQNGVL_					0	0	0		tr|A0A553SRS5|A0A553SRS5_NIACIPLP-dependentaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01775PE=3SV=1	tr|A0A553SRS5|A0A553SRS5_NIACIPLP-dependentaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01775PE=3SV=1	tr|A0A553SRS5|A0A553SRS5_NIACIPLP-dependentaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01775PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.7533264160156	2	465.256174	928.497795	-1.0666	-0.00049622	1.938	0.00090167	0.87144	0.00040544	465.2566087480938	54.223	1.6375	50.976	50.212	51.85	-3.2474					58	31	3	0	0	0	0.027164	1	3273	3273		68.787	0	1	179000			5746	34291	4593	4602	6934	6934					0.03068596892092046
EAAKRKLIE	9	Unmodified	_EAAKRKLIE_					0	0	0			REV__nc|ENSG00000156110|P55263-3|ADK	REV__nc|ENSG00000156110|P55263-3|ADK	MULTI-MSMS	OvCa9_classI_Rep2	2	529.321533203125	2	529.321848	1056.62914	-2.2715	-0.0012024	2.3103	0.0012229	0.038765	2.0519E-05	529.3228556155507	38.054	1.1856	35.345	35.075	36.261	-2.7097					42	23	3	0	0	0	0.3076	1	1757	1757		62.107	1.9892	1	136430	+		5747	20461	4594	4603	6935	6935					0.10309407260024273
EAALARHRI	9	Unmodified	_EAALARHRI_					0	0	0			REV__nc|ENSG00000090539|Q9H2X0-5|CHRD	REV__nc|ENSG00000090539|Q9H2X0-5|CHRD	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.3316040039062	2	518.804157	1035.59376	-0.39265	-0.00020371	1.9477	0.0010105	1.5551	0.00080677	518.8048800185408	77.734	1.6726	75.381	74.681	76.354	-2.3527					71	32	3	0	0	0	0.027462	1	4035	4035		50.025	22.142	1	265750	+		5748	17226	4595	4604	6936	6936					0.07738789522863954
EAALESLIK	9	Unmodified	_EAALESLIK_					0	0	0		ENSG00000188312|ENST00000375587|CENPP;nc|ENSG00000188312|Q6IPU0-2|CENPP	ENSG00000188312|ENST00000375587|CENPP	ENSG00000188312|ENST00000375587|CENPP	MULTI-MSMS	OvCa9_classI_Rep3	3	487.28253173828125	2	487.281857	972.549162	-1.0485	-0.0005109	0.41711	0.00020325	-0.63137	-0.00030765	487.2819843698998	95.08	2.6649	93.185	92.561	95.226	-1.8956					196	52	7	0	0	0	0.19758	1	6161	6161		76.774	0	1	4110600			5749	8463	4596	4605	6937	6937					0.061789208661593875
EAAPALVPRA	10	Unmodified	_EAAPALVPRA_					0	0	0		ENST00000601438.2_1_19:47724101-47724386:-|nuORF	ENST00000601438.2_1_19:47724101-47724386:-|nuORF	ENST00000601438.2_1_19:47724101-47724386:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.27130126953125	2	497.787641	993.56073	-0.32423	-0.0001614	0.39686	0.00019755	0.072632	3.6155E-05	497.78757252365745	52.375	0.65791	52.375	52.17	52.828	0					46	14	5	0	0	0	0.026635	1	4138	4138		56.721	7.2795	1	1801000			5750	14225	4597	4606	6938	6938					0.06369162680141471
EAAPCILLL	9	Unmodified	_EAAPCILLL_					0	0	0		ENST00000412565.2_3_14:24025103-24025394:-|nuORF	ENST00000412565.2_3_14:24025103-24025394:-|nuORF	ENST00000412565.2_3_14:24025103-24025394:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.8096923828125	2	471.770071	941.52559	1.8591	0.00087707	2.0011	0.00094407	3.8602	0.0018211	471.7710070591227	68.086	0.68122	64.595	64.136	64.818	-3.4902					17	13	2	0	0	0	0.027462	1	5056	5056		17.365	0	1	59465			5751	11548	4598	4607	6939	6939					0.05248783827983061
EAAPCILLL	9	Unmodified	_EAAPCILLL_					0	0	0		ENST00000412565.2_3_14:24025103-24025394:-|nuORF	ENST00000412565.2_3_14:24025103-24025394:-|nuORF	ENST00000412565.2_3_14:24025103-24025394:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	471.770071	941.52559	0.23341	0.00011012	6.8246	0.0032196	7.058	0.0033298	471.7731774597607	64.96	0.44013	64.96	64.71	65.15	0	0.18256	0.0028094	NaN	24.203	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188200			5752	11548	4598	4607							0.05248783827983061
EAAPETRVE	9	Unmodified	_EAAPETRVE_					0	0	0			REV__ENSG00000106263|ENST00000360876|EIF3B	REV__ENSG00000106263|ENST00000360876|EIF3B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.2306213378906	2	501.248546	1000.48254	-2.1906	-0.001098	1.5466	0.00077521	-0.64402	-0.00032281	501.2491486434972	49.112	0.9874	45.971	45.675	46.663	-3.1416					32	18	2	0	0	0	0.027426	1	2723	2723		47.657	3.2801	1	116580	+		5753	17785	4599	4608	6940	6940					-0.0176831469575518
EAAPLPLPSE	10	Unmodified	_EAAPLPLPSE_					0	0	0			REV__nc|ENSG00000182095|O15417-2|TNRC18	REV__nc|ENSG00000182095|O15417-2|TNRC18	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.2547607421875	2	512.27149	1022.52843	-0.25525	-0.00013076	-1.1958	-0.00061259	-1.4511	-0.00074334	512.2699721358058	87.2	0.54843	84.574	84.25	84.799	-2.6269					15	10	2	0	0	0	0.026659	1	7410	7410		45.972	5.1941	1	26428	+		5754	22262	4600	4609	6941	6941					0.018063304864767815
EAAQGGQDTP	10	Unmodified	_EAAQGGQDTP_					0	0	0			REV__ENST00000489330.6_1_X:11156985-11160533:-|nuORF	REV__ENST00000489330.6_1_X:11156985-11160533:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	487.2821960449219	2	487.214703	972.414853	-0.99829	-0.00048638	1.1309	0.00055101	0.13265	6.4629E-05	487.2159948017533	95.067	0.14772	93.172	93.063	93.211	-1.8956					4	2	2	0	0	0	0.026849	1	6178	6178		40.778	7.2626	1	5442.6	+		5755	16661	4601	4610	6942	6942					-0.07245764626566142
EAARAVPEL	9	Unmodified	_EAARAVPEL_					0	0	0		ENSG00000160972|ENST00000435887|PPP1R16A;ENST00000526564.1_1_8:145724415-145725789:+|nuORF	ENSG00000160972|ENST00000435887|PPP1R16A	ENSG00000160972|ENST00000435887|PPP1R16A	MULTI-MSMS	OvCa9_classI_Rep2	2	478.26483154296875	2	478.263999	954.513445	-1.4372	-0.00068734	0.98646	0.00047179	-0.45069	-0.00021555	478.2643712792569	61.352	1.7932	58.593	57.987	59.78	-2.7593					85	34	5	0	0	0	0.38969	1	4548	4548		52.937	0.63753	1	559570			5756	6110	4602	4611	6943	6943					0.03436883409131042
EAARLHGRL	9	Unmodified	_EAARLHGRL_					0	0	0			REV__ENST00000478313.1_1_21:37898783-37915072:-|nuORF	REV__ENST00000478313.1_1_21:37898783-37915072:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.254638671875	2	511.796332	1021.57811	-1.1447	-0.00058583	3.0234	0.0015474	1.8788	0.00096154	511.79782474903686	87.39	1.6116	84.763	84.399	86.01	-2.6269					68	31	3	0	0	0	0.027447	1	7458	7458		47.657	3.5405	1	383950	+		5757	26414	4603	4612	6944	6944					0.06818503005820276
EAASPFGPDL	10	Unmodified	_EAASPFGPDL_					0	0	0		ENSG00000169087|ENST00000306103|HSPBAP1	ENSG00000169087|ENST00000306103|HSPBAP1	ENSG00000169087|ENST00000306103|HSPBAP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.2381591796875	2	502.24019	1002.46583	-1.265	-0.00063536	-3.1377	-0.0015759	-4.4027	-0.0022112	502.23856738863066	45.994	1.7055	42.922	42.666	44.371	-3.0724					89	32	5	0	0	0	0.18827	1	2403	2403		96.19	13.885	1	918230			5758	6976	4604	4613	6945	6945					-0.03530815581711977
EAATAGLGVHL	11	Unmodified	_EAATAGLGVHL_					0	0	0			REV__sp|P16721|UL11P_HCMVAProteinUL11OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL11PE=2SV=1	REV__sp|P16721|UL11P_HCMVAProteinUL11OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL11PE=2SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.3045654296875	2	519.782556	1037.55056	-0.077319	-4.0189E-05	1.5193	0.00078971	1.442	0.00074952	519.7830830771368	66.957	0.44354	63.467	63.295	63.739	-3.4902					10	8	2	0	0	0	0.025909	1	4876	4876		34.173	3.6689	1	27088	+		5759	29423	4605	4614	6946	6946					0.03328554954919127
EAATAGLGVHL	11	Unmodified	_EAATAGLGVHL_					0	0	0			REV__sp|P16721|UL11P_HCMVAProteinUL11OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL11PE=2SV=1	REV__sp|P16721|UL11P_HCMVAProteinUL11OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL11PE=2SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	519.782556	1037.55056	-0.22908	-0.00011907	0.033672	1.7502E-05	-0.1954	-0.00010157	519.782574919631	63.588	0.4375	63.588	63.376	63.814	0	0.060258	-0.00018385	NaN	25.574	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	315720	+		5760	29423	4605	4614							0.03328554954919127
EAAVLRQRRQ	10	Unmodified	_EAAVLRQRRQ_					0	0	0		ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	OvCa9_classI_Rep2	2	409.5752868652344	3	409.57406	1225.70035	0.91978	0.00037672	2.5301	0.0010363	3.4499	0.001413	409.5749714327195	45.439	1.4465	42.729	42.348	43.794	-2.7097					72	28	3	0	0	0	0.66944	1	2653	2653		33.922	3.3528	1	196340			5761	6011	4606	4615	6947	6947					0.09652920017379074
EACCPCRTL	9	Unmodified	_EACCPCRTL_					0	0	0		ENST00000270460.10_2_19:56203316-56203349:+|nuORF	ENST00000270460.10_2_19:56203316-56203349:+|nuORF	ENST00000270460.10_2_19:56203316-56203349:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.94464111328125	2	498.208998	994.403442	-1.0134	-0.0005049	4.3521	0.0021682	3.3387	0.0016634	498.2096980600213	81.735	0.29091	79.052	78.865	79.156	-2.683					11	5	3	0	0	0	0.027295	1	6716	6716		84.916	13.538	1	20659			5762	9988	4607	4616	6948	6948					-0.09398324517553647
EACGHREIHAL	11	Unmodified	_EACGHREIHAL_					0	0	0		ENSG00000215148|ENST00000399677|PRSS41;nc|ENSG00000215148|Q7RTY9|PRSS41	ENSG00000215148|ENST00000399677|PRSS41	ENSG00000215148|ENST00000399677|PRSS41	MULTI-MSMS	OvCa9_classI_Rep4_	4	618.3023681640625	2	618.301121	1234.58769	2.4867	0.0015375	2.378	0.0014703	4.8647	0.0030078	618.3023307124392	136.26	0.82465	134.72	134.45	135.27	-1.5437					40	16	3	0	0	0	0.52842	1	13212	13212		51.193	8.7966	1	85440			5763	9202	4608	4617	6949	6949					-0.02022096770974713
EACGHREIHAL	11	Unmodified	_EACGHREIHAL_					0	0	0		ENSG00000215148|ENST00000399677|PRSS41;nc|ENSG00000215148|Q7RTY9|PRSS41	ENSG00000215148|ENST00000399677|PRSS41	ENSG00000215148|ENST00000399677|PRSS41	MULTI-MATCH	OvCa9_classI_Rep2	2		2	618.301121	1234.58769	-0.74545	-0.00046091	5.7337	0.0035451	4.9882	0.0030842	618.304389682044	135.3	0.98006	135.08	134.59	135.57	-0.22696	0.20369	0.0015644	NaN	51.193	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61635			5764	9202	4608	4617							-0.02022096770974713
EACVIQEVGM	10	Oxidation (M)	_EACVIQEVGM(Oxidation (M))_		EACVIQEVGM(1)		EACVIQEVGM(100)	0	0	1		ENSG00000234829|ENST00000413767|IFNA17	ENSG00000234829|ENST00000413767|IFNA17	ENSG00000234829|ENST00000413767|IFNA17	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.7465209960938	2	547.746467	1093.47838	-1.6033	-0.00087821	1.321	0.00072355	-0.28235	-0.00015465	547.7470542660203	106.92	1.9159	105.04	104.7	106.61	-1.8785					83	37	5	0	0	0	0.15262	1	9731	9731		101.6	10.824	1	679780			5765	9303	4609	4618	6950	6950		279			-0.0646186350534208
EADNILKDADI	11	Unmodified	_EADNILKDADI_					0	0	0		ENST00000490732.5_1_1:101477199-101487300:-|nuORF;ENST00000488789.5_1_1:101460696-101487300:-|nuORF;ENST00000477293.5_1_1:101467067-101490999:-|nuORF;ENST00000476507.1_1_1:101479229-101490999:-|nuORF;ENST00000481871.5_1_1:101455997-101490867:-|nuORF;nc|ENSG00000117543|Q9H2P9-3|DPH5;nc|ENSG00000117543|Q9H2P9-2|DPH5;nc|ENSG00000117543|Q9H2P9-6|DPH5;nc|ENSG00000117543|Q9H2P9-4|DPH5;ENSG00000117543|ENST00000370109|DPH5;nc|ENSG00000117543|Q9H2P9-5|DPH5	ENST00000490732.5_1_1:101477199-101487300:-|nuORF	ENST00000490732.5_1_1:101477199-101487300:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	609.8019409179688	2	608.806425	1215.5983	2.2774	0.0013865	-2.5043	-0.0015247	-0.22691	-0.00013814	608.8048617385516	110.76	0.57474	110.76	110.54	111.11	0					23	12	2	0	0	0	0.025332	1	12571	12571		41.427	0	1	652330			5766	3262	4610	4619	6951	6951					-0.0008783563557699381
EAEAALAVVE	10	Unmodified	_EAEAALAVVE_					0	0	0		chr12:54283225-54283827|429|79.9|0.0|22.93|+|0|HNRNPA1,HNRNPA1|1	chr12:54283225-54283827|429|79.9|0.0|22.93|+|0|HNRNPA1,HNRNPA1|1	chr12:54283225-54283827|429|79.9|0.0|22.93|+|0|HNRNPA1,HNRNPA1|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.2380676269531	2	501.261122	1000.50769	-1.2086	-0.0006058	1.4854	0.00074457	0.27684	0.00013877	501.76267420904577	46.139	0.52283	43.067	42.771	43.294	-3.0724					14	9	2	0	0	0	0.026606	1	2415	2415		62.107	3.3255	1	17970			5767	324	4611	4620	6952	6952					0.007457401068108993
EAEAEAIDRAI	11	Unmodified	_EAEAEAIDRAI_					0	0	0			REV__ENSG00000154479|ENST00000447353|CFAP210	REV__ENSG00000154479|ENST00000447353|CFAP210	MULTI-MSMS	OvCa9_classI_Rep2	2	594.29931640625	2	594.298767	1186.58298	-1.0714	-0.00063671	0.49601	0.00029478	-0.57535	-0.00034193	594.299039734462	75.518	2.2821	73.664	72.913	75.195	-1.854					147	43	5	0	0	0	0.39237	1	6227	6227		61.691	8.0944	1	1939700	+		5768	20384	4612	4621	6953	6953					-0.002847024327593317
EAEAEDEDE	9	Unmodified	_EAEAEDEDE_					0	0	0			REV__ENSG00000008382|ENST00000599840|MPND	REV__ENSG00000008382|ENST00000599840|MPND	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.6851196289062	2	518.683098	1035.35164	-0.44606	-0.00023136	2.2895	0.0011875	1.8434	0.00095615	518.684132521914	58.278	1.3527	54.925	54.639	55.991	-3.3537					51	26	3	0	0	0	0.36502	1	3827	3827		55.504	0	1	269790	+		5769	16454	4613	4622	6954	6954					-0.16461794925112372
EAEAEDEDE	9	Unmodified	_EAEAEDEDE_					0	0	0			REV__ENSG00000008382|ENST00000599840|MPND	REV__ENSG00000008382|ENST00000599840|MPND	MULTI-MATCH	OvCa9_classI_Rep2	2		2	518.683098	1035.35164	-0.31684	-0.00016434	2.3963	0.0012429	2.0795	0.0010786	518.6842338661245	57.889	1.1032	55.097	54.674	55.777	-2.792	0.086354	6.3931E-05	NaN	55.504	30	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39054	+		5770	16454	4613	4622							-0.16461794925112372
EAEAEDEDE	9	Unmodified	_EAEAEDEDE_					0	0	0			REV__ENSG00000008382|ENST00000599840|MPND	REV__ENSG00000008382|ENST00000599840|MPND	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	518.683098	1035.35164	-0.44606	-0.00023136	2.2895	0.0011875	1.8434	0.00095615	518.684132521914	58.278	1.3527	54.925	54.639	55.991	-3.3537	-0.086354	-4.6922E-05	NaN	55.504	51	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269790	+		5771	16454	4613	4622							-0.16461794925112372
EAEARQVP	8	Unmodified	_EAEARQVP_					0	0	0			REV__nc|ENSG00000131016|Q02952-3|AKAP12	REV__nc|ENSG00000131016|Q02952-3|AKAP12	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.7625732421875	2	450.232699	898.450845	0.036631	1.6492E-05	-0.003788	-1.7055E-06	0.032843	1.4787E-05	450.2324160941813	54.053	0.47726	54.053	53.815	54.293	0					20	11	3	0	0	0	0.028476	1	4320	4320		55.504	9.5523	1	188950	+		5772	18990	4614	4623	6955	6955					-0.002442626590436703
EAECLEELVE	10	Unmodified	_EAECLEELVE_					0	0	0			REV__tr|A0A553SLF6|A0A553SLF6_NIACIFormate--tetrahydrofolateligaseOS=NialliacirculansOX=1397GN=fhsPE=3SV=1	REV__tr|A0A553SLF6|A0A553SLF6_NIACIFormate--tetrahydrofolateligaseOS=NialliacirculansOX=1397GN=fhsPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.2808837890625	2	582.260462	1162.50637	-1.0971	-0.00063877	-3.1235	-0.0018187	-4.2205	-0.0024574	582.2589912186243	41.919	0.30172	41.919	41.766	42.068	0					10	6	3	0	0	0	0.026688	1	2638	2638		25.574	0	1	139380	+		5773	30222	4615	4624	6956	6956					-0.0683826204426623
EAEELWAQL	9	Unmodified	_EAEELWAQL_					0	0	0			REV__POU4F2|p.S329Y|1|0.55|ENSG00000151615|chr4:146640564-146640564|C/A|missense_variant	REV__POU4F2|p.S329Y|1|0.55|ENSG00000151615|chr4:146640564-146640564|C/A|missense_variant	MSMS	OvCa99_classI_Rep5	1	544.7638549804688	2	544.766571	1087.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.247	1	37.247	36.747	37.747	0								0	0	0	0.16802	1	2027	2027		56.721	7.185	1		+		5774	17238	4616	4625	6957	6957					-0.021668575189096373
EAEIKRLGP	9	Unmodified	_EAEIKRLGP_					0	0	0			REV__PSAP-SGPL1|1|fusion	REV__PSAP-SGPL1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.7938537597656	2	506.792924	1011.57129	-1.3101	-0.00066397	0.29075	0.00014735	-1.0194	-0.00051662	506.79321373025203	48.637	1.5556	45.529	45.141	46.697	-3.1077					92	29	4	0	0	0	0.12365	1	2685	2685		90.777	8.5361	1	1364100	+		5775	21168	4617	4626	6958	6958					0.06597145334581
EAEILAKKR	9	Unmodified	_EAEILAKKR_					0	0	0			REV__ENSG00000147475|ENST00000519638|ERLIN2	REV__ENSG00000147475|ENST00000519638|ERLIN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.3211059570312	2	529.321848	1056.62914	-0.42285	-0.00022382	0.15093	7.9892E-05	-0.27192	-0.00014393	529.3218210721118	38.222	1.3387	35.296	35.057	36.395	-2.9264					74	26	4	0	0	0	0.33652	1	1479	1479		58.782	0	1	419980	+		5776	20069	4618	4627	6959	6959					0.10309407260001535
EAEKGREDL	9	Unmodified	_EAEKGREDL_					0	0	0		CEP128|p.R478G|1|0.08|ENSG00000100629|chr14:80792888-80792888|T/C|missense_variant	CEP128|p.R478G|1|0.08|ENSG00000100629|chr14:80792888-80792888|T/C|missense_variant	CEP128|p.R478G|1|0.08|ENSG00000100629|chr14:80792888-80792888|T/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.281494140625	2	523.759278	1045.504	-0.31618	-0.0001656	0.45206	0.00023677	0.13588	7.117E-05	523.760332460464	73.783	0.5444	73.783	73.4	73.945	0					15	13	2	0	0	0	0.027462	1	7222	7222		42.396	3.59	1	355460			5777	223	4619	4628	6960	6960					-0.01692929667046883
EAEKHPEVL	9	Unmodified	_EAEKHPEVL_					0	0	0		ENST00000484164.6_1_6:139233880-139237022:-|nuORF;nc|ENSG00000135597|Q96D71-2|REPS1;nc|ENSG00000135597|Q96D71-4|REPS1;nc|ENSG00000135597|Q96D71-3|REPS1;ENSG00000135597|ENST00000450536|REPS1	ENST00000484164.6_1_6:139233880-139237022:-|nuORF	ENST00000484164.6_1_6:139233880-139237022:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.8197631835938	2	526.274564	1050.53457	-1.1022	-0.00058007	-2.0954	-0.0011028	-3.1977	-0.0016829	526.2721822330384	94.876	0.20023	92.407	92.26	92.46	-2.4685					5	3	2	0	0	0	0.027462	1	8310	8310		42.864	7.6636	1	8157.3			5778	4391	4620	4629	6961	6961					0.011328487179980584
EAEKLCIEL	9	Unmodified	_EAEKLCIEL_					0	0	0			REV__ENSG00000230561|ENST00000514853|CCDC192	REV__ENSG00000230561|ENST00000514853|CCDC192	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.2745971679688	2	524.273175	1046.5318	-0.47435	-0.00024869	-1.3419	-0.00070355	-1.8163	-0.00095223	524.2722654338831	75.911	0.52923	72.973	72.741	73.27	-2.9389					36	10	6	0	0	0	0.029147	1	6011	6011		136.27	12.188	1	270450	+		5779	23382	4621	4630	6962	6962					0.010392572688033397
EAEKLREMS	9	Unmodified	_EAEKLREMS_					0	0	0		ENST00000508336.1_1_4:166469096-166469723:-|nuORF	ENST00000508336.1_1_4:166469096-166469723:-|nuORF	ENST00000508336.1_1_4:166469096-166469723:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.3154907226562	2	546.771331	1091.52811	-0.99679	-0.00054502	-2.5692	-0.0014048	-3.566	-0.0019498	546.7700259646914	73.834	1.2423	70.438	70.124	71.366	-3.3961					47	25	3	0	0	0	0.027343	1	5786	5786		68.787	0	1	379270			5780	12943	4622	4631	6963	6963					-0.013994125050430739
EAEKSHPDL	9	Unmodified	_EAEKSHPDL_					0	0	0		ENSG00000203485|ENST00000392634|INF2;nc|ENSG00000203485|Q27J81-2|INF2	ENSG00000203485|ENST00000392634|INF2	ENSG00000203485|ENST00000392634|INF2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.7935180664062	2	513.248546	1024.48254	0.14479	7.4312E-05	1.8723	0.00096096	2.0171	0.0010353	513.2492685421327	60.542	0.84632	57.112	56.848	57.694	-3.43					28	16	2	0	0	0	0.027462	1	4085	4085		35.618	5.1146	1	105720			5781	8921	4623	4632	6964	6964					-0.02872314695764544
EAELLKETI	9	Unmodified	_EAELLKETI_					0	0	0		tr|A0A7D7A0K1|A0A7D7A0K1_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_00405PE=3SV=1	tr|A0A7D7A0K1|A0A7D7A0K1_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_00405PE=3SV=1	tr|A0A7D7A0K1|A0A7D7A0K1_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_00405PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.2797241210938	2	523.292422	1044.57029	-0.7626	-0.00039906	-1.1003	-0.00057578	-1.8629	-0.00097484	523.2918819714716	77.218	1.0197	74.402	74.244	75.263	-2.8165					23	20	2	0	0	0	0.027453	1	6178	6178		54.776	12.38	1	84226			5782	35997	4624	4633	6965	6965					0.04978886175013031
EAELLKETI	9	Unmodified	_EAELLKETI_					0	0	0		tr|A0A7D7A0K1|A0A7D7A0K1_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_00405PE=3SV=1	tr|A0A7D7A0K1|A0A7D7A0K1_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_00405PE=3SV=1	tr|A0A7D7A0K1|A0A7D7A0K1_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_00405PE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	523.292422	1044.57029	0.031711	1.6594E-05	4.632	0.0024239	4.6637	0.0024405	523.796605844971	74.068	0.26878	74.068	73.907	74.176	0	-0.16668	0.0039453	NaN	54.776	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154110			5783	35997	4624	4633							0.04978886175013031
EAELQAKNL	9	Unmodified	_EAELQAKNL_					0	0	0		nc|ENSG00000084234|Q06481-4|APLP2;nc|ENSG00000084234|Q06481-2|APLP2;ENSG00000084234|ENST00000338167|APLP2;nc|ENSG00000084234|Q06481-6|APLP2;nc|ENSG00000084234|Q06481|APLP2;nc|ENSG00000084234|Q06481-5|APLP2	nc|ENSG00000084234|Q06481-4|APLP2	nc|ENSG00000084234|Q06481-4|APLP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3152160644531	2	508.274564	1014.53457	0.3417	0.00017368	2.9514	0.0015001	3.2931	0.0016738	508.2759246100199	114.03	1.4821	112.59	112.24	113.72	-1.4461					44	28	2	0	0	0	0.027455	1	10631	10631		42.396	0	1	139750			5784	1713	4625	4634	6966	6966					0.027888487179893673
EAELQLPSGA	10	Unmodified	_EAELQLPSGA_					0	0	0			REV__ENST00000392474.6_1_12:121675701-121675980:-|nuORF	REV__ENST00000392474.6_1_12:121675701-121675980:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7586975097656	2	507.758746	1013.50294	-0.087912	-4.4638E-05	-1.2341	-0.00062664	-1.3221	-0.00067128	507.7579372157221	115.82	0.84155	114.42	114.07	114.91	-1.3977					42	16	4	0	0	0	0.50999	1	10799	10799		52.937	8.4056	1	144850	+		5785	25260	4626	4635	6967	6967					-0.003271440359412736
EAELRRVE	8	Unmodified	_EAELRRVE_					0	0	0		ENST00000474361.6_1_X:1719073-1720484:+|nuORF;ENSG00000197976|ENST00000313871|AKAP17A	ENST00000474361.6_1_X:1719073-1720484:+|nuORF	ENST00000474361.6_1_X:1719073-1720484:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.2306213378906	2	501.272355	1000.53016	-1.5387	-0.00077131	1.0829	0.00054282	-0.45582	-0.00022849	501.2721557718231	48.643	1.2962	45.536	45.09	46.386	-3.1077					67	24	4	0	0	0	0.028476	1	2723	2723		82.241	25.519	1	129750			5786	8769	4627	4636	6968	6968					0.02991384295091848
EAENLSNSLI	10	Unmodified	_EAENLSNSLI_					0	0	0		tr|A0A7D6ZWZ1|A0A7D6ZWZ1_9CLOTAlanyl-tRNAeditingproteinAlaX-LOS=ClostridiumintestinaleOX=36845GN=HZF06_21065PE=4SV=1	tr|A0A7D6ZWZ1|A0A7D6ZWZ1_9CLOTAlanyl-tRNAeditingproteinAlaX-LOS=ClostridiumintestinaleOX=36845GN=HZF06_21065PE=4SV=1	tr|A0A7D6ZWZ1|A0A7D6ZWZ1_9CLOTAlanyl-tRNAeditingproteinAlaX-LOS=ClostridiumintestinaleOX=36845GN=HZF06_21065PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.7974243164062	2	545.274761	1088.53497	-0.55963	-0.00030515	-3.6499	-0.0019902	-4.2095	-0.0022953	545.2720794802015	89.25	0.73568	86.647	86.186	86.922	-2.6027					25	14	3	0	0	0	0.026653	1	7621	7621		49.536	31.212	1	41973			5787	35860	4628	4637	6969	6969					-0.005757763527981297
EAEPISSLI	9	Unmodified	_EAEPISSLI_					0	0	0			REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L	REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L	MULTI-MSMS	OvCa99_classI_Rep5	1	479.7589111328125	2	479.758215	957.501877	1.8373	0.00088148	-0.0098776	-4.7389E-06	1.8275	0.00087674	479.75796485788555	125.59	0.47897	125.59	125.42	125.9	0					21	10	3	0	0	0	0.36502	1	14512	14512		55.504	0	1	182000	+		5788	21473	4629	4638	6970	6970					0.021426415951623312
EAEPKMLLV	9	Unmodified	_EAEPKMLLV_					0	0	0			REV__nc|ENSG00000126838|P20742-2|PZP	REV__nc|ENSG00000126838|P20742-2|PZP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.270263671875	2	515.286085	1028.55762	-0.62254	-0.00032079	-2.8335	-0.00146	-3.456	-0.0017808	515.2844867723005	103.58	0.625	101.46	101.07	101.69	-2.1192					25	11	3	0	0	0	0.027441	1	9378	9378		29.15	0	1	67881	+		5789	28835	4630	4639	6971	6971					0.044481515111101544
EAEPKMLLV	9	Unmodified	_EAEPKMLLV_					0	0	0			REV__nc|ENSG00000126838|P20742-2|PZP	REV__nc|ENSG00000126838|P20742-2|PZP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.286085	1028.55762	-0.99877	-0.00051465	-2.548	-0.0013129	-3.5468	-0.0018276	515.2845618749154	102.01	0.54628	101.25	100.96	101.51	-0.76401	-0.093269	0.00052419	NaN	29.15	26	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57284	+		5790	28835	4630	4639							0.044481515111101544
EAEPKMLLV	9	Unmodified	_EAEPKMLLV_					0	0	0			REV__nc|ENSG00000126838|P20742-2|PZP	REV__nc|ENSG00000126838|P20742-2|PZP	MULTI-MATCH	OvCa9_classI_Rep3	3		2	515.286085	1028.55762	0.22437	0.00011562	-4.3778	-0.0022558	-4.1535	-0.0021402	515.2839099873576	102.84	0.57385	101.32	101.05	101.62	-1.5211	-0.020275	-0.0013616	NaN	29.15	28	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60011	+		5791	28835	4630	4639							0.044481515111101544
EAEPLCKR	8	Unmodified	_EAEPLCKR_					0	0	0		nc|ENSG00000126214|Q07866-8|KLC1;nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866-3|KLC1;nc|ENSG00000126214|Q07866|KLC1;nc|ENSG00000126214|Q07866-7|KLC1;nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-6|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1;nc|ENSG00000174996|Q9H0B6-2|KLC2;ENSG00000174996|ENST00000394067|KLC2	nc|ENSG00000126214|Q07866-8|KLC1;nc|ENSG00000174996|Q9H0B6-2|KLC2	nc|ENSG00000126214|Q07866-8|KLC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.7724304199219	2	473.244752	944.474951	-0.17895	-8.4688E-05	2.5471	0.0012054	2.3682	0.0011207	473.24466709006936	106.51	0.30695	104.49	104.36	104.66	-2.0161					6	5	2	0	0	0	0.028476	1	9712	9712		30.504	11.4	1	8092.8			5792	3768;7506	4631	4640	6972	6972					0.0004925450297150746
EAEPSGRIV	9	Unmodified	_EAEPSGRIV_					0	0	0		ENSG00000154447|ENST00000284637|SH3RF1;SH3RF1|p.S673C|1|0.13|ENSG00000154447|chr4:169116390-169116390|G/C|missense_variant	ENSG00000154447|ENST00000284637|SH3RF1	ENSG00000154447|ENST00000284637|SH3RF1	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.7715148925781	2	479.253631	956.49271	0.17141	8.2149E-05	-1.1881	-0.00056938	-1.0166	-0.00048723	479.2515850815098	71.914	0.73016	69.407	69.121	69.851	-2.5071					20	13	2	0	0	0	0.027462	1	5848	5848		39.253	15.73	1	9308.2			5793	5737	4632	4641	6973	6973					0.012722930294899015
EAEPWEGMRS	10	Unmodified	_EAEPWEGMRS_					0	0	0		ENST00000546388.1_1_12:56708586-56708889:-|nuORF	ENST00000546388.1_1_12:56708586-56708889:-|nuORF	ENST00000546388.1_1_12:56708586-56708889:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.7699584960938	2	596.258588	1190.50262	1.894	0.0011293	-3.3569	-0.0020016	-1.4629	-0.00087226	596.2566040944337	125.75	0.64682	125.75	125.49	126.13	0					15	13	2	0	0	0	0.027117	1	14513	14513		21.686	0	1	76448			5794	13532	4633	4642	6974	6974					-0.08500887027457793
EAEQAKQKAL	10	Unmodified	_EAEQAKQKAL_					0	0	0			REV__ENSG00000131050|ENST00000354932|BPIFA2	REV__ENSG00000131050|ENST00000354932|BPIFA2	MULTI-MSMS	OvCa99_classI_Rep5	1	558.3065185546875	2	558.306395	1114.59824	0.58837	0.00032849	-1.0865	-0.00060658	-0.49809	-0.00027809	558.3057781598629	45.18	1.0025	45.18	44.932	45.934	0					55	22	4	0	0	0	0.32141	1	3094	3094		78.264	0	1	5230800	+		5795	18994	4634	4643	6975	6975					0.04552209155099263
EAERKHKSI	9	Unmodified	_EAERKHKSI_					0	0	0			REV__nc|ENSG00000136824|O95347-2|SMC2	REV__nc|ENSG00000136824|O95347-2|SMC2	MULTI-MSMS	OvCa99_classI_Rep5	1	549.306396484375	2	549.306729	1096.59891	-0.096961	-5.3261E-05	-0.075261	-4.1342E-05	-0.17222	-9.4603E-05	549.3066076387065	32.229	0.44745	32.229	32.055	32.503	0					24	8	4	0	0	0	0.29519	1	1391	1391		63.534	15.877	1	415210	+		5796	19406	4635	4644	6976	6976					0.05447048594805892
EAERLSMED	9	Unmodified	_EAERLSMED_					0	0	0		tr|A0A553SFY1|A0A553SFY1_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09695PE=4SV=1	tr|A0A553SFY1|A0A553SFY1_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09695PE=4SV=1	tr|A0A553SFY1|A0A553SFY1_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09695PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.2915649414062	2	540.237321	1078.46009	1.4722	0.00079533	-1.5976	-0.00086311	-0.12546	-6.7777E-05	540.2363005064947	109.2	0.44058	109.2	108.97	109.41	0					13	9	2	0	0	0	0.027426	1	12391	12391		56.721	10.749	1	114370			5797	33091	4636	4645	6977	6977					-0.07600282155704008
EAERRARVKG	10	Unmodified	_EAERRARVKG_					0	0	0		nc|ENSG00000130396|P55196-2|AFDN	nc|ENSG00000130396|P55196-2|AFDN	nc|ENSG00000130396|P55196-2|AFDN	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.7900390625	2	586.336353	1170.65815	-0.10766	-6.3125E-05	0.66846	0.00039194	0.5608	0.00032882	586.3365305117798	58.361	0.54243	58.361	58.153	58.696	0					24	12	3	0	0	0	0.026906	1	4966	4966		33.922	0	1	687650			5798	15012	4637	4646	6978	6978					0.07964944608988844
EAERRKLR	8	Unmodified	_EAERRKLR_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.P12974Lfs*4|1|0.05|ENSG00000155657|chr2:178631204-178631205|-/GTACA|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7528686523438	2	529.314889	1056.61522	1.3073	0.00069197	2.3434	0.0012404	3.6507	0.0019324	529.3159436319845	98.361	0.68826	98.361	97.995	98.683	0					34	15	3	0	0	0	0.028476	1	10847	10847		38.806	5.2906	1	621740			5799	5793;36288	4638	4647	6979	6979					0.0891817455153614
EAERRKLR	8	Unmodified	_EAERRKLR_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.P12974Lfs*4|1|0.05|ENSG00000155657|chr2:178631204-178631205|-/GTACA|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	529.314889	1056.61522	-1.2122	-0.00064164	-1.7646	-0.00093403	-2.9768	-0.0015757	529.312189238653	99.134	0.74716	98.241	97.658	98.405	-0.89305	-0.059754	-0.0039827	NaN	38.806	23	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16560			5800	5793;36288	4638	4647							0.0891817455153614
EAESRQGPD	9	Unmodified	_EAESRQGPD_					0	0	0		ENSG00000122779|ENST00000343526|TRIM24;nc|ENSG00000122779|O15164-2|TRIM24;TRIM24|p.D245Tfs*5|1|0.24|ENSG00000122779|chr7:138519289-138519289|A/-|frameshift_variant	ENSG00000122779|ENST00000343526|TRIM24	ENSG00000122779|ENST00000343526|TRIM24	MULTI-SECPEP	OvCa9_classI_Rep3	3	495.2982482910156	2	494.720153	987.425752	-0.58721	-0.0002905	-1.0098	-0.00049955	-1.597	-0.00079006	494.71932778111733	88.92	0.53461	86.789	86.607	87.141	-2.1309					18	10	2	0	0	0	0.027455	1	5448	5448		34.173	5.023	1	27842			5801	3558	4639	4648	6980	6980					-0.06846362252281324
EAESVEVAL	9	Unmodified	_EAESVEVAL_					0	0	0			REV__ENSG00000175766|ENST00000318682|EIF4E1B	REV__ENSG00000175766|ENST00000318682|EIF4E1B	MULTI-MSMS	OvCa99_classI_Rep5	1	473.7427673339844	2	473.740022	945.465492	-0.32889	-0.00015581	1.5287	0.00072419	1.1998	0.00056838	473.74057089822185	40.455	0.86022	40.455	40.154	41.014	0					37	18	3	0	0	0	0.21395	2	2449	2449;2473		73.975	8.1716	1	2238700	+		5802	21914	4640	4649	6981;6982	6981					-0.009422353015565932
EAESVEVAL	9	Unmodified	_EAESVEVAL_					0	0	0			REV__ENSG00000175766|ENST00000318682|EIF4E1B	REV__ENSG00000175766|ENST00000318682|EIF4E1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.7582702636719	2	473.740022	945.465492	-0.32889	-0.00015581	1.5287	0.00072419	1.1998	0.00056838	473.74057089822185	40.455	0.86022	40.455	40.154	41.014	0					37	18	3	0	0	0	0.027392	1	2443	2443		85.359	35.918	1	2238700	+		5803	21914	4640	4649	6983	6983					-0.009422353015565932
EAETIIQKI	9	Unmodified	_EAETIIQKI_					0	0	0		ENSG00000168918|ENST00000445964|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;nc|ENSG00000168918|Q92835-3|INPP5D	ENSG00000168918|ENST00000445964|INPP5D	ENSG00000168918|ENST00000445964|INPP5D	MULTI-MSMS	OvCa9_classI_Rep3	3	522.7998657226562	2	522.800414	1043.58628	-0.78114	-0.00040838	0.97045	0.00050735	0.1893	9.8967E-05	522.8007535698202	102.18	1.6733	100.66	100.27	101.94	-1.5211					69	31	4	0	0	0	0.14998	1	7033	7033		84.916	2.675	1	499170			5804	6956	4641	4650	6984	6984					0.06622592411895312
EAFCSLYLN	9	Unmodified	_EAFCSLYLN_					0	0	0			REV__nc|ENSG00000243137|Q00888-3|PSG4	REV__nc|ENSG00000243137|Q00888-3|PSG4	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.3084716796875	2	530.244418	1058.47428	-0.45931	-0.00024354	3.0678	0.0016267	2.6085	0.0013832	530.2467046497849	53.808	0.69461	53.808	53.519	54.214	0					27	16	3	0	0	0	0.027455	1	4277	4277		34.173	3.8548	1	556940	+		5805	23463	4642	4651	6985	6985					-0.052615849367384726
EAFDPKRLL	9	Unmodified	_EAFDPKRLL_					0	0	0		ENSG00000070367|ENST00000621441|EXOC5;ENST00000555749.5_1_14:57710864-57735366:-|nuORF;ENST00000554598.5_1_14:57706266-57735366:-|nuORF	ENSG00000070367|ENST00000621441|EXOC5	ENSG00000070367|ENST00000621441|EXOC5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.82080078125	2	544.808574	1087.60259	-1.2771	-0.00069575	-0.95314	-0.00051928	-2.2302	-0.001215	545.308991442128	117.97	0.73607	116.63	116.26	117	-1.3444					20	13	2	0	0	0	0.027462	1	11003	11003		47.657	23.455	1	7709.8			5806	1425	4643	4652	6986	6986					0.062297183686723656
EAFDRHLL	8	Unmodified	_EAFDRHLL_					0	0	0		nc|ENSG00000095321|P43155-3|CRAT;nc|ENSG00000095321|P43155-2|CRAT;ENSG00000095321|ENST00000318080|CRAT	nc|ENSG00000095321|P43155-3|CRAT	nc|ENSG00000095321|P43155-3|CRAT	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.29638671875	2	500.764166	999.513779	-1.909	-0.00095596	1.413	0.00070756	-0.49603	-0.0002484	500.76480415427227	88.678	0.60052	86.075	85.882	86.483	-2.6027					24	11	3	0	0	0	0.028476	1	7561	7561		37.159	1.5408	1	68471			5807	1925	4644	4653	6987	6987					0.01400303128991709
EAFGAGKKND	10	Unmodified	_EAFGAGKKND_					0	0	0		tr|A0A553SNW9|A0A553SNW9_NIACIDNApolymeraseIIIPolC-typeOS=NialliacirculansOX=1397GN=polCPE=3SV=1	tr|A0A553SNW9|A0A553SNW9_NIACIDNApolymeraseIIIPolC-typeOS=NialliacirculansOX=1397GN=polCPE=3SV=1	tr|A0A553SNW9|A0A553SNW9_NIACIDNApolymeraseIIIPolC-typeOS=NialliacirculansOX=1397GN=polCPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.2802734375	2	518.756538	1035.49852	-0.87402	-0.00045341	0.24124	0.00012514	-0.63279	-0.00032826	518.7563355036895	64.422	0.62439	64.422	64.21	64.834	0					24	14	3	0	0	0	0.026891	1	5887	5887		31.53	10.583	1	527170			5808	33972	4645	4654	6988	6988					-0.017806084588528392
EAFICLQKL	9	Carbamidomethyl (C)	_EAFIC(Carbamidomethyl (C))LQKL_	EAFIC(1)LQKL		EAFIC(93)LQKL		0	1	0		ENSG00000116668|ENST00000367500|SWT1	ENSG00000116668|ENST00000367500|SWT1	ENSG00000116668|ENST00000367500|SWT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.2804565429688	2	561.30481	1120.59507	1.6923	0.00094988	-2.7941	-0.0015683	-1.1018	-0.00061844	561.3032303683133	139.08	0.81879	139.08	138.64	139.46	0					37	16	4	0	0	0	0.027353	1	16228	16228		93.195	21.318	1	235230			5809	3192	4646	4655	6989	6989	29				0.03959242776704741
EAFIIDFF	8	Unmodified	_EAFIIDFF_					0	0	0			REV__nc|ENSG00000171595|Q9GZS0-2|DNAI2	REV__nc|ENSG00000171595|Q9GZS0-2|DNAI2	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.8017578125	2	501.252569	1000.49058	0.41129	0.00020616	-3.9791	-0.0019945	-3.5678	-0.0017883	501.2504126026934	72.441	0.82787	72.441	72.208	73.035	0					26	20	2	0	0	0	0.028476	1	7085	7085		33.516	8.0654	1	1209400	+		5810	21628	4647	4656	6990	6990					-0.009641357083410185
EAFILLTLL	9	Unmodified	_EAFILLTLL_					0	0	0			REV__CUBN|p.N2467Tfs*26|1|0.51|ENSG00000107611|chr10:16913949-16913949|A/-|frameshift_variant	REV__CUBN|p.N2467Tfs*26|1|0.51|ENSG00000107611|chr10:16913949-16913949|A/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.7545776367188	2	516.820618	1031.62668	2.4794	0.0012814	-2.9966	-0.0015487	-0.51724	-0.00026732	516.8189026650227	87.911	0.54108	87.911	87.671	88.212	0					26	12	3	0	0	0	0.027462	1	9314	9314		16.473	0	1	618280	+		5811	16257	4648	4657	6991	6991					0.11213558802319312
EAFNKCTKP	9	Unmodified	_EAFNKCTKP_					0	0	0			REV__PPIL1|p.G104Pfs*12|1|0.09|ENSG00000137168|chr6:36856004-36856005|-/GG|frameshift_variant	REV__PPIL1|p.G104Pfs*12|1|0.09|ENSG00000137168|chr6:36856004-36856005|-/GG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.2969970703125	2	519.257859	1036.50117	-0.6853	-0.00035585	3.6579	0.0018994	2.9726	0.0015435	519.2593148043561	60.282	0.51608	60.282	59.918	60.434	0					17	12	2	0	0	0	0.027462	1	5200	5200		21.96	0	1	186640	+		5812	19438	4649	4658	6992	6992					-0.015624763255345897
EAFQAQRSQL	10	Unmodified	_EAFQAQRSQL_					0	0	0		ENST00000532206.1_1_16:50731151-50744498:+|nuORF;nc|ENSG00000167207|Q9HC29-3|NOD2;ENST00000526417.6_1_16:50727539-50743880:+|nuORF;ENSG00000167207|ENST00000647318|NOD2;nc|ENSG00000167207|Q9HC29|NOD2	ENST00000532206.1_1_16:50731151-50744498:+|nuORF	ENST00000532206.1_1_16:50731151-50744498:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	589.3072509765625	2	589.301644	1176.58874	0.0050899	2.9995E-06	0.32688	0.00019263	0.33197	0.00019563	589.3017243848522	64.728	0.66113	64.728	64.294	64.955	0					36	15	3	0	0	0	0.28422	1	5899	5899		82.75	3.0379	1	2218400			5813	6771	4650	4659	6993	6993					0.0075044086956950196
EAFTDQKEP	9	Unmodified	_EAFTDQKEP_					0	0	0			REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.810791015625	2	532.748379	1063.4822	2.8337	0.0015097	-2.6895	-0.0014328	0.14423	7.684E-05	532.7469913891699	116	0.55121	116	115.82	116.37	0					21	11	3	0	0	0	0.027433	1	13299	13299		45.972	1.5951	1	157620	+		5814	22973	4651	4660	6994	6994					-0.04699734415612511
EAFTFIKRQDI	11	Unmodified	_EAFTFIKRQDI_					0	0	0			REV__ENST00000466052.1_1_1:33256818-33263474:-|nuORF	REV__ENST00000466052.1_1_1:33256818-33263474:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.58062744140625	3	456.58211	1366.7245	0.035569	1.624E-05	-3.3047	-0.0015089	-3.2692	-0.0014926	456.58058235023054	21.709	1.5452	20.371	20.017	21.562	-1.3386					108	32	6	0	0	0	0.69099	1	244	244		32.751	2.1817	1	887710	+		5815	19219	4652	4661	6995	6995					0.05580715660357782
EAFVAFRDV	9	Unmodified	_EAFVAFRDV_					0	0	0		ENSG00000181666|ENST00000392153|ZNF875	ENSG00000181666|ENST00000392153|ZNF875	ENSG00000181666|ENST00000392153|ZNF875	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.2774047851562	2	527.271824	1052.5291	0.38978	0.00020552	1.3847	0.00073009	1.7744	0.00093561	527.2721665530271	67.354	1.0321	63.863	63.59	64.622	-3.4902					28	20	2	0	0	0	0.027462	1	4977	4977		34.173	0	1	53197			5816	7945	4653	4662	6996	6996					0.004931699261760514
EAFVRHILSG	10	Unmodified	_EAFVRHILSG_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000412707.1_1_17:69617202-69617574:+|nuORF	ENSG00000092841|ENST00000550697|MYL6;ENST00000412707.1_1_17:69617202-69617574:+|nuORF	ENSG00000092841|ENST00000550697|MYL6	MULTI-MSMS	OvCa99_classI_Rep5	1	564.8133544921875	2	564.811648	1127.60874	2.8184	0.0015919	-0.78364	-0.00044261	2.0348	0.0011493	564.8110475159301	75.935	1.0769	75.935	75.68	76.757	0					73	26	4	0	0	0	0.020903	2	7578	7578;7609		146.79	53.642	1	6755400			5817	1901;11551	4654	4663	6997;6998	6997					0.050042366001889604
EAFVYDPLV	9	Unmodified	_EAFVYDPLV_					0	0	0		nc|ENSG00000157106|Q96Q15-4|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1	nc|ENSG00000157106|Q96Q15-4|SMG1	nc|ENSG00000157106|Q96Q15-4|SMG1	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.8259887695312	2	526.768583	1051.52261	-1.2861	-0.0006775	-2.7741	-0.0014613	-4.0602	-0.0021388	526.7672895732971	100.79	1.2398	100.02	99.476	100.72	-0.76401					40	24	2	0	0	0	0.02741	1	9221	9221		60.972	9.6365	1	33516			5818	5874	4655	4664	6999	6999					-0.0010876802521124773
EAGAQIKEI	9	Unmodified	_EAGAQIKEI_					0	0	0			REV__tr|A0A553SFH8|A0A553SFH8_NIACIDNA3'-5'helicaseOS=NialliacirculansOX=1397GN=CEQ21_08910PE=3SV=1	REV__tr|A0A553SFH8|A0A553SFH8_NIACIDNA3'-5'helicaseOS=NialliacirculansOX=1397GN=CEQ21_08910PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	479.7651062011719	2	479.763832	957.513111	0.20596	9.8811E-05	0.38862	0.00018645	0.59458	0.00028526	479.7635931089206	57.28	0.85639	57.28	56.961	57.818	0					52	19	4	0	0	0	0.21231	1	4795	4795		74.255	5.4682	1	2977000	+		5819	29580	4656	4665	7000	7000					0.032654636892857525
EAGATVIVPA	10	Unmodified	_EAGATVIVPA_					0	0	0		tr|A0A7D6ZUX4|A0A7D6ZUX4_9CLOTSDRfamilyNAD(P)-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12045PE=3SV=1	tr|A0A7D6ZUX4|A0A7D6ZUX4_9CLOTSDRfamilyNAD(P)-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12045PE=3SV=1	tr|A0A7D6ZUX4|A0A7D6ZUX4_9CLOTSDRfamilyNAD(P)-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12045PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	464.75982666015625	2	464.260925	926.507297	-0.42558	-0.00019758	-2.3135	-0.001074	-2.739	-0.0012716	464.2606977952047	79.122	1.6821	76.371	75.991	77.673	-2.7514					92	34	4	0	0	0	0.50656	1	6386	6386		53.351	0	1	2409000			5820	35784	4657	4666	7001	7001					0.04110365177609765
EAGDVIGVL	9	Unmodified	_EAGDVIGVL_					0	0	0		ENSG00000164867|ENST00000297494|NOS3;ENST00000477227.1_1_7:150707648-150711254:+|nuORF	ENSG00000164867|ENST00000297494|NOS3	ENSG00000164867|ENST00000297494|NOS3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.2125549316406	2	436.739825	871.465098	0.88362	0.00038591	-0.95716	-0.00041803	-0.07354	-3.2118E-05	436.73930988197765	68.396	0.78752	64.906	64.671	65.459	-3.4902					30	15	3	0	0	0	0.027449	1	5121	5121		60.294	19.721	1	99543			5821	6493	4658	4667	7002	7002					0.024223897692422725
EAGHLSSF	8	Unmodified	_EAGHLSSF_					0	0	0		ENST00000536831.5_2_10:99160996-99161062:-|nuORF	ENST00000536831.5_2_10:99160996-99161062:-|nuORF	ENST00000536831.5_2_10:99160996-99161062:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	424.19989013671875	2	424.200867	846.387182	1.3973	0.00059273	-2.663	-0.0011296	-1.2657	-0.0005369	424.1996803945391	128.73	0.83997	127.64	127.42	128.26	-1.0933					31	16	2	0	0	0	0.68312	2	10142	10142;10153		46.766	13.251	1	94043			5822	13396	4659	4668	7003;7004	7003					-0.04215623096126819
EAGHSFNQIL	10	Unmodified	_EAGHSFNQIL_					0	0	0		tr|A0A553SU79|A0A553SU79_NIACISpoIID/LytBdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06510PE=4SV=1	tr|A0A553SU79|A0A553SU79_NIACISpoIID/LytBdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06510PE=4SV=1	tr|A0A553SU79|A0A553SU79_NIACISpoIID/LytBdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06510PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.7626342773438	2	558.277638	1114.54072	0.60282	0.00033654	0.089149	4.977E-05	0.69197	0.00038631	558.2774227543374	57.754	0.33265	57.754	57.609	57.941	0					10	7	2	0	0	0	0.026782	1	4884	4884		37.812	21.338	1	148380			5823	34578	4660	4669	7005	7005					-0.011966330504719735
EAGIHVFI	8	Unmodified	_EAGIHVFI_					0	0	0		ENSG00000164136|ENST00000320650|IL15	ENSG00000164136|ENST00000320650|IL15	ENSG00000164136|ENST00000320650|IL15	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.25885009765625	2	443.245078	884.475603	0.16171	7.1679E-05	-1.2749	-0.0005651	-1.1132	-0.00049342	443.2431793419565	38.655	0.6935	35.728	35.453	36.146	-2.9264					18	13	3	0	0	0	0.028476	1	1503	1503		49.211	6.7363	1	17872			5824	6420	4661	4670	7006	7006					0.02874417214343339
EAGIHVFI	8	Unmodified	_EAGIHVFI_					0	0	0		ENSG00000164136|ENST00000320650|IL15	ENSG00000164136|ENST00000320650|IL15	ENSG00000164136|ENST00000320650|IL15	MULTI-MATCH	OvCa99_classI_Rep5	1		2	443.245078	884.475603	0.68557	0.00030388	-2.1829	-0.00096754	-1.4973	-0.00066366	443.24390627292314	35.852	0.37075	35.852	35.614	35.984	0	0.061734	-0.00038371	NaN	49.211	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29075			5825	6420	4661	4670							0.02874417214343339
EAGLGQVPLI	10	Unmodified	_EAGLGQVPLI_					0	0	0		nc|ENSG00000185664|P40967-4|PMEL;nc|ENSG00000185664|P40967-5|PMEL;ENSG00000185664|ENST00000548747|PMEL;nc|ENSG00000185664|P40967-2|PMEL;nc|ENSG00000185664|P40967-3|PMEL	nc|ENSG00000185664|P40967-4|PMEL	nc|ENSG00000185664|P40967-4|PMEL	MULTI-MSMS	OvCa9_classI_Rep3	3	498.7893981933594	2	498.78985	995.565146	-0.82368	-0.00041084	0.20105	0.00010028	-0.62263	-0.00031056	498.78992392916325	116.11	3.0188	115.07	114.6	117.62	-1.0414					179	60	5	0	0	0	0.3976	1	8698	8698		68.787	4.5796	1	2745900			5826	8273	4662	4671	7007	7007					0.06718627103043673
EAGLKRKPS	9	Unmodified	_EAGLKRKPS_					0	0	0		nc|ENSG00000116731|Q13029-5|PRDM2;nc|ENSG00000116731|Q13029-3|PRDM2;nc|ENSG00000116731|Q13029-2|PRDM2;ENSG00000116731|ENST00000311066|PRDM2	nc|ENSG00000116731|Q13029-5|PRDM2	nc|ENSG00000116731|Q13029-5|PRDM2	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.765869140625	2	493.293091	984.571629	-0.3287	-0.00016215	2.44	0.0012036	2.1113	0.0010415	493.293038399084	67.474	1.4314	64.813	64.298	65.729	-2.661					56	28	3	0	0	0	0.027418	1	5374	5374		40.778	0	1	67306			5827	3204	4663	4672	7008	7008					0.07872565054424285
EAGLKRRKK	9	Unmodified	_EAGLKRRKK_					0	0	0			REV__ENSG00000112837|ENST00000369663|TBX18	REV__ENSG00000112837|ENST00000369663|TBX18	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.8449096679688	2	543.348732	1084.68291	-0.4372	-0.00023755	-2.4152	-0.0013123	-2.8524	-0.0015498	543.3474669897093	38.995	0.57486	38.995	38.576	39.151	0					23	12	3	0	0	0	0.027462	1	2257	2257		42.396	14.514	1	415670	+		5828	18121	4664	4673	7009	7009					0.1439562448235847
EAGNINQSLL	10	Unmodified	_EAGNINQSLL_					0	0	0		ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MULTI-SECPEP	OvCa9_classI_Rep3	3	530.3007202148438	2	529.77747	1057.54039	-1.0523	-0.00055749	2.0859	0.001105	1.0336	0.00054755	529.7798275343812	101.37	1.6629	99.763	99.094	100.76	-1.6053					51	31	2	0	0	0	0.02711	1	6866	6866		63.534	0	1	221670			5829	4663	4665	4674	7010	7010					0.013919472296720414
EAGPDAYFEF	10	Unmodified	_EAGPDAYFEF_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	OvCa9_classI_Rep4_	4	573.2451171875	2	573.242929	1144.47131	-0.88787	-0.00050897	3.207	0.0018384	2.3191	0.0013294	573.244717677838	93.832	2.1096	91.325	90.763	92.873	-2.5072					78	43	3	0	0	0	0.52321	1	8170	8170		51.335	5.3632	1	203320	+		5830	17152	4666	4675	7011	7011					-0.09515136789923417
EAGPDAYFEF	10	Unmodified	_EAGPDAYFEF_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	573.242929	1144.47131	-0.5742	-0.00032916	3.1438	0.0018022	2.5696	0.001473	573.2448386744705	92.797	1.4997	91.629	90.814	92.313	-1.168	0.19815	-0.00079736	NaN	51.335	60	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60436	+		5831	17152	4666	4675							-0.09515136789923417
EAGPDAYFEF	10	Unmodified	_EAGPDAYFEF_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	573.242929	1144.47131	-1.8101	-0.0010377	4.6038	0.0026391	2.7936	0.0016014	573.2453157488542	93.3	1.9613	91.338	90.836	92.798	-1.9617	-0.092636	0.00087648	NaN	51.335	91	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236930	+		5832	17152	4666	4675							-0.09515136789923417
EAGREQVGK	9	Unmodified	_EAGREQVGK_					0	0	0		tr|A0A553SKW8|A0A553SKW8_NIACITlyAfamilyRNAmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_19530PE=3SV=1	tr|A0A553SKW8|A0A553SKW8_NIACITlyAfamilyRNAmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_19530PE=3SV=1	tr|A0A553SKW8|A0A553SKW8_NIACITlyAfamilyRNAmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_19530PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.78424072265625	2	487.256705	972.498858	-1.1162	-0.00054388	0.10207	4.9733E-05	-1.0141	-0.00049415	487.2565954392376	36.763	0.4935	36.763	36.575	37.069	0					22	10	3	0	0	0	0.027462	1	1944	1944		32.812	14.488	1	357900			5833	33661	4667	4676	7012	7012					0.011508112610044918
EAGRGSRTLI	10	Unmodified	_EAGRGSRTLI_					0	0	0		ENST00000356970.6_2_1:109493033-109506074:-|nuORF	ENST00000356970.6_2_1:109493033-109506074:-|nuORF	ENST00000356970.6_2_1:109493033-109506074:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	531.3040771484375	2	530.298904	1058.58326	2.7738	0.0014709	-2.481	-0.0013157	0.29277	0.00015526	530.296202249073	102.44	1.0597	102.44	102.04	103.1	0					83	24	5	0	0	0	0.5675	1	11448	11448		45.972	1.5951	1	1872000			5834	10705	4668	4677	7013	7013					0.05630762077748841
EAGRKAILT	9	Unmodified	_EAGRKAILT_					0	0	0		nc|ENSG00000162552|P56705-2|WNT4;ENSG00000162552|ENST00000290167|WNT4	nc|ENSG00000162552|P56705-2|WNT4	nc|ENSG00000162552|P56705-2|WNT4	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.2430725097656	2	479.787641	957.56073	-0.24341	-0.00011678	-0.18995	-9.1138E-05	-0.43336	-0.00020792	479.78736900369694	47.776	0.56596	47.776	47.638	48.204	0					16	12	2	0	0	0	0.027441	1	3502	3502		68.787	28.009	1	198570			5835	6193	4669	4678	7014	7014					0.0802516268013278
EAGRKAILT	9	Unmodified	_EAGRKAILT_					0	0	0		nc|ENSG00000162552|P56705-2|WNT4;ENSG00000162552|ENST00000290167|WNT4	nc|ENSG00000162552|P56705-2|WNT4	nc|ENSG00000162552|P56705-2|WNT4	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	479.787641	957.56073	-1.1601	-0.00055661	-0.49818	-0.00023902	-1.6583	-0.00079563	479.78774226894507	50.691	0.20824	47.518	47.36	47.568	-3.1734	-0.12876	-0.00025801	NaN	68.787	8	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42250			5836	6193	4669	4678							0.0802516268013278
EAGSKEEAGII	11	Unmodified	_EAGSKEEAGII_					0	0	0		ENSG00000168135|ENST00000303592|KCNJ4	ENSG00000168135|ENST00000303592|KCNJ4	ENSG00000168135|ENST00000303592|KCNJ4	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.8104248046875	2	552.282586	1102.55062	0.76011	0.0004198	-3.4579	-0.0019097	-2.6978	-0.0014899	552.280735747804	66.967	0.23926	66.967	66.816	67.055	0					9	5	2	0	0	0	0.024038	1	6246	6246		61.691	0	1	246720			5837	6875	4670	4679	7015	7015					0.0034451016424554837
EAGTHDVL	8	Unmodified	_EAGTHDVL_					0	0	0			REV__tr|A0A7D7A3H5|A0A7D7A3H5_9CLOTPuroperonrepressorOS=ClostridiumintestinaleOX=36845GN=purRPE=3SV=1	REV__tr|A0A7D7A3H5|A0A7D7A3H5_9CLOTPuroperonrepressorOS=ClostridiumintestinaleOX=36845GN=purRPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	421.745849609375	2	421.20615	840.397747	-0.49907	-0.00021021	0.94313	0.00039725	0.44406	0.00018704	421.2064485291328	42.157	0.34788	42.157	41.982	42.329	0					12	7	2	0	0	0	0.028476	1	2666	2666		31.955	1.4512	1	53173	+		5838	32585	4671	4680	7016	7016					-0.028836404417234007
EAGTLRRR	8	Unmodified	_EAGTLRRR_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI;nc|ENSG00000140525|Q9NVI1-4|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.26226806640625	2	479.780682	957.546811	0.47016	0.00022557	2.1995	0.0010553	2.6697	0.0012809	479.7814470038714	68.539	0.78752	65.049	64.671	65.459	-3.4902					22	15	2	0	0	0	0.028476	1	5081	5081		42.396	0	1	55683			5839	4855	4672	4681	7017	7017					0.06633929971701491
EAGYCPFWGV	10	Unmodified	_EAGYCPFWGV_					0	0	0		ENST00000518554.2_1_8:104432630-104432684:+|nuORF	ENST00000518554.2_1_8:104432630-104432684:+|nuORF	ENST00000518554.2_1_8:104432630-104432684:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.3155517578125	2	564.744585	1127.47462	1.298	0.00073303	3.2773	0.0018508	4.5753	0.0025838	564.746247252978	80.971	0.67033	80.971	80.659	81.329	0					23	15	2	0	0	0	0.026939	1	8300	8300		11.511	0	1	272010			5840	13072	4673	4682	7018	7018					-0.08402165216898538
EAHHVAVRD	9	Unmodified	_EAHHVAVRD_					0	0	0			REV__nc|ENSG00000176055|Q68D91-2|MBLAC2	REV__nc|ENSG00000176055|Q68D91-2|MBLAC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.2507934570312	2	517.262322	1032.51009	-0.24286	-0.00012562	-0.88272	-0.0004566	-1.1256	-0.00058222	517.2617361489108	62.219	0.66771	62.219	61.953	62.621	0					35	15	3	0	0	0	0.027453	1	5508	5508		54.776	5.3348	1	2068500	+		5841	21929	4674	4683	7019	7019					-0.004863666448500226
EAHLVAVV	8	Unmodified	_EAHLVAVV_					0	0	0		ENST00000481837.1_1_20:19998463-19998766:+|nuORF	ENST00000481837.1_1_20:19998463-19998766:+|nuORF	ENST00000481837.1_1_20:19998463-19998766:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	420.23590087890625	2	419.245078	836.475603	-1.1729	-0.00049174	0.9457	0.00039648	-0.22722	-9.526E-05	419.24540808705876	92.271	0.86272	89.728	89.364	90.226	-2.5425					31	16	3	0	0	0	0.028476	1	8052	8052		15.636	0	1	32160			5842	12553	4675	4684	7020	7020					0.05082417214327961
EAHPLPLR	8	Unmodified	_EAHPLPLR_					0	0	0			REV__ENST00000462722.5_1_9:131597926-131600079:-|nuORF	REV__ENST00000462722.5_1_9:131597926-131600079:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	466.770263671875	2	466.769252	931.52395	-0.52029	-0.00024286	0.56189	0.00026228	0.041605	1.942E-05	466.7694002665362	59.164	0.75418	59.164	58.932	59.686	0					53	19	4	0	0	0	0.59148	1	5064	5064		65.803	17.888	1	10313000	+		5843	26116	4676	4685	7021	7021					0.05544910854223417
EAIAIGSVL	9	Unmodified	_EAIAIGSVL_					0	0	0			REV__tr|A0A553SF82|A0A553SF82_NIACIROKfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08415PE=3SV=1	REV__tr|A0A553SF82|A0A553SF82_NIACIROKfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08415PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.75830078125	2	436.758018	871.501483	-0.28858	-0.00012604	0.51624	0.00022547	0.22765	9.9429E-05	436.75808419558217	82.345	0.73053	79.663	79.346	80.076	-2.683					43	14	4	0	0	0	0.18193	1	6801	6801		79.451	0	1	494020	+		5844	29544	4677	4686	7022	7022					0.06059266665965879
EAIDKYIN	8	Unmodified	_EAIDKYIN_					0	0	0			REV__tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1	REV__tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.23681640625	2	483.250557	964.486562	-1.3327	-0.00064405	-3.4505	-0.0016675	-4.7832	-0.0023115	483.2486714440046	120.06	0.41948	118.72	118.46	118.88	-1.3444					10	7	2	0	0	0	0.028476	1	11291	11291		26.693	0	1	18589	+		5845	31524	4678	4687	7023	7023					0.002897747979432097
EAIDQLNQ	8	Unmodified	_EAIDQLNQ_					0	0	0		ENSG00000183579|ENST00000544604|ZNRF3;nc|ENSG00000183579|Q9ULT6-2|ZNRF3	ENSG00000183579|ENST00000544604|ZNRF3	ENSG00000183579|ENST00000544604|ZNRF3	MULTI-SECPEP	OvCa9_classI_Rep2	2	465.2872009277344	2	465.729989	929.445425	0.35029	0.00016314	-3.8676	-0.0018013	-3.5173	-0.0016381	465.7290095298175	124.9	0.345	124.66	124.47	124.81	-0.2359					9	6	2	0	0	0	0.028476	1	12154	12154		90.37	7.6193	1	6151.2			5846	8088	4679	4688	7024	7024					-0.0221198624152521
EAIHAPIIKM	10	Unmodified	_EAIHAPIIKM_					0	0	0		tr|A0A7D6VTH9|A0A7D6VTH9_9CLOTGlutamineamidotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08065PE=4SV=1	tr|A0A7D6VTH9|A0A7D6VTH9_9CLOTGlutamineamidotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08065PE=4SV=1	tr|A0A7D6VTH9|A0A7D6VTH9_9CLOTGlutamineamidotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08065PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	561.8201293945312	2	561.820627	1121.6267	2.4263	0.0013631	-3.8078	-0.0021393	-1.3816	-0.00077619	561.8185729824205	108.74	2.4089	108.74	107.9	110.31	0					132	54	4	0	0	0	0.6349	1	12264	12264		37.812	3.639	1	3717600			5847	35120	4680	4689	7025	7025					0.07075235530692225
EAIHMVKIP	9	Unmodified	_EAIHMVKIP_					0	0	0			REV__tr|A0A553SM68|A0A553SM68_NIACILactateutilizationproteinAOS=NialliacirculansOX=1397GN=lutAPE=3SV=1	REV__tr|A0A553SM68|A0A553SM68_NIACILactateutilizationproteinAOS=NialliacirculansOX=1397GN=lutAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	519.2958374023438	2	519.294245	1036.57394	-0.44013	-0.00022856	1.459	0.00075767	1.0189	0.00052911	519.2947479138992	73.569	0.71236	73.569	73.195	73.907	0					46	17	3	0	0	0	0.21395	1	7219	7219		73.975	5.1879	1	1609400	+		5848	30301	4681	4690	7026	7026					0.05711277467889886
EAIHMVKIP	9	Unmodified	_EAIHMVKIP_					0	0	0			REV__tr|A0A553SM68|A0A553SM68_NIACILactateutilizationproteinAOS=NialliacirculansOX=1397GN=lutAPE=3SV=1	REV__tr|A0A553SM68|A0A553SM68_NIACILactateutilizationproteinAOS=NialliacirculansOX=1397GN=lutAPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	519.294245	1036.57394	-0.32808	-0.00017037	-1.2351	-0.00064139	-1.5632	-0.00081176	519.2934172998362	75.9	0.95959	73.528	72.813	73.773	-2.3715	-0.098073	-0.0023159	NaN	73.975	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31616	+		5849	30301	4681	4690							0.05711277467889886
EAIHMVKIP	9	Unmodified	_EAIHMVKIP_					0	0	0			REV__tr|A0A553SM68|A0A553SM68_NIACILactateutilizationproteinAOS=NialliacirculansOX=1397GN=lutAPE=3SV=1	REV__tr|A0A553SM68|A0A553SM68_NIACILactateutilizationproteinAOS=NialliacirculansOX=1397GN=lutAPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	519.294245	1036.57394	-0.62617	-0.00032516	-0.62303	-0.00032353	-1.2492	-0.0006487	519.2938079852426	76.721	0.62033	73.782	73.55	74.171	-2.9389	0.1558	-0.0016802	NaN	73.975	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36854	+		5850	30301	4681	4690							0.05711277467889886
EAIKIAKNN	9	Unmodified	_EAIKIAKNN_					0	0	0		tr|A0A7D6ZU13|A0A7D6ZU13_9CLOTRadicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22285PE=4SV=1	tr|A0A7D6ZU13|A0A7D6ZU13_9CLOTRadicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22285PE=4SV=1	tr|A0A7D6ZU13|A0A7D6ZU13_9CLOTRadicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22285PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.27899169921875	2	500.792924	999.571294	1.3318	0.00066695	2.0694	0.0010364	3.4012	0.0017033	500.7928642874214	89.528	0.64314	88.226	87.938	88.581	-1.302					12	8	2	0	0	0	0.027461	1	7890	7890		25.574	0	1	50865			5851	35763	4682	4691	7027	7027					0.07149145334562945
EAILGRAGEL	10	Unmodified	_EAILGRAGEL_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.2708740234375	2	514.790381	1027.56621	0.48549	0.00024992	-0.49018	-0.00025234	-0.0046906	-2.4147E-06	514.7898960242703	103.43	1.5205	101.99	101.45	102.97	-1.4347					62	28	3	0	0	0	0.026493	1	7128	7128		53.089	8.7118	1	366300	+		5852	21477	4683	4692	7028	7028					0.05352841471949432
EAILGRAGEL	10	Unmodified	_EAILGRAGEL_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.2705078125	2	514.790381	1027.56621	-0.68788	-0.00035411	0.59163	0.00030457	-0.096248	-4.9547E-05	514.790454850502	104.13	1.8179	102.01	101.33	103.15	-2.1192					62	34	3	0	0	0	0.026646	1	9389	9389		53.089	1.7535	1	349240	+		5853	21477	4683	4692	7029	7029					0.05352841471949432
EAINNGEETL	10	Unmodified	_EAINNGEETL_					0	0	0		tr|A0A7D6VPT1|A0A7D6VPT1_9CLOTL,D-transpeptidase/peptidoglycanbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17635PE=4SV=1	tr|A0A7D6VPT1|A0A7D6VPT1_9CLOTL,D-transpeptidase/peptidoglycanbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17635PE=4SV=1	tr|A0A7D6VPT1|A0A7D6VPT1_9CLOTL,D-transpeptidase/peptidoglycanbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17635PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.3021240234375	2	545.256568	1088.49858	2.075	0.0011314	0.13815	7.5329E-05	2.2132	0.0012067	545.7561390504417	78.351	0.69813	78.351	78.011	78.709	0					39	16	4	0	0	0	0.026956	1	7948	7948		19.997	9.1312	1	1326500			5854	34794	4684	4693	7030	7030					-0.042126532495103675
EAIQIVNNN	9	Unmodified	_EAIQIVNNN_					0	0	0		nc|ENSG00000119711|Q02252-2|ALDH6A1;ENSG00000119711|ENST00000553458|ALDH6A1	nc|ENSG00000119711|Q02252-2|ALDH6A1	nc|ENSG00000119711|Q02252-2|ALDH6A1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.762939453125	2	507.764363	1013.51417	-0.75433	-0.00038302	-1.6017	-0.00081327	-2.356	-0.0011963	507.7634972764376	115.15	1.4832	115.03	114.8	116.28	-0.11777					77	29	3	0	0	0	0.51865	1	10985	10985		40.778	1.972	1	179880			5855	3389	4685	4694	7031	7031					0.007956780581821477
EAISKLRLA	9	Unmodified	_EAISKLRLA_					0	0	0		nc|ENSG00000166348|Q70EL1-7|USP54;ENSG00000166348|ENST00000687698|USP54;nc|ENSG00000166348|Q70EL1-6|USP54;ENST00000498143.5_1_10:75279553-75335416:-|nuORF	nc|ENSG00000166348|Q70EL1-7|USP54	nc|ENSG00000166348|Q70EL1-7|USP54	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.759033203125	2	500.811116	999.60768	-1.0573	-0.0005295	0.73601	0.0003686	-0.32128	-0.0001609	500.81119456085185	69.202	0.44923	66.582	66.366	66.815	-2.6203					15	8	2	0	0	0	0.027402	1	5467	5467		76.774	35.996	1	27504			5856	6668	4686	4695	7032	7032					0.10786022231275183
EAIVAPLPAA	10	Unmodified	_EAIVAPLPAA_					0	0	0			REV__ENSG00000181555|ENST00000409792|SETD2;REV__SETD2|p.E983Kfs*23|1|0.1|ENSG00000181555|chr3:47121689-47121689|C/-|frameshift_variant	REV__SETD2|p.E983Kfs*23|1|0.1|ENSG00000181555|chr3:47121689-47121689|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.2659606933594	2	476.279118	950.543683	1.2059	0.00057437	-3.4538	-0.001645	-2.2479	-0.0010706	476.2775433944172	123.69	0.72645	123.69	123.42	124.15	0					26	15	3	0	0	0	0.026669	1	14260	14260		47.916	0	1	303540	+		5857	22239;29354	4687	4696	7033	7033					0.06643242074312639
EAIVLSNWDV	10	Unmodified	_EAIVLSNWDV_					0	0	0			REV__ENST00000470900.1_1_3:51423580-51426517:+|nuORF	REV__ENST00000470900.1_1_3:51423580-51426517:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	573.2971801757812	2	573.295496	1144.57644	-1.4379	-0.00082431	4.2353	0.0024281	2.7974	0.0016037	573.2973104478957	118.31	1.6164	116.96	116.52	118.14	-1.3444					58	30	3	0	0	0	0.43433	1	11074	11074		63.534	4.7519	1	175880	+		5858	26268	4688	4697	7034	7034					0.00993404406517584
EAIVLSNWDV	10	Unmodified	_EAIVLSNWDV_					0	0	0			REV__ENST00000470900.1_1_3:51423580-51426517:+|nuORF	REV__ENST00000470900.1_1_3:51423580-51426517:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	573.295496	1144.57644	-2.0105	-0.0011526	4.6459	0.0026635	2.6354	0.0015109	573.2980711896968	117.18	0.69218	117.06	116.77	117.46	-0.12868	0.063798	-1.6701E-05	NaN	63.534	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76090	+		5859	26268	4688	4697							0.00993404406517584
EAIVLSNWDV	10	Unmodified	_EAIVLSNWDV_					0	0	0			REV__ENST00000470900.1_1_3:51423580-51426517:+|nuORF	REV__ENST00000470900.1_1_3:51423580-51426517:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	573.295496	1144.57644	-0.96986	-0.00055602	6.0419	0.0034638	5.072	0.0029078	573.297526831811	117.99	0.59378	116.96	116.69	117.28	-1.0324	-0.032571	0.0015839	NaN	63.534	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117140	+		5860	26268	4688	4697							0.00993404406517584
EAIVLSNWDV	10	Unmodified	_EAIVLSNWDV_					0	0	0			REV__ENST00000470900.1_1_3:51423580-51426517:+|nuORF	REV__ENST00000470900.1_1_3:51423580-51426517:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	573.295496	1144.57644	-1.4379	-0.00082431	4.2353	0.0024281	2.7974	0.0016037	573.2973104478957	118.31	1.6164	116.96	116.52	118.14	-1.3444	-0.031227	-0.00048751	NaN	63.534	58	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175880	+		5861	26268	4688	4697							0.00993404406517584
EAIVVIRDI	9	Unmodified	_EAIVVIRDI_					0	0	0		nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.3123779296875	2	514.310949	1026.60735	-0.82174	-0.00042263	0.017687	9.0967E-06	-0.80406	-0.00041353	514.310966463184	52.835	1.8731	49.627	49.4	51.273	-3.208					72	36	2	0	0	0	0.31747	1	3238	3238		60.972	0.85368	1	2119300			5862	872	4689	4698	7035	7035					0.09510602511409161
EAKAKLSVI	9	Unmodified	_EAKAKLSVI_					0	0	0		tr|A0A553STI4|A0A553STI4_NIACIFormate/nitritetransporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05035PE=4SV=1	tr|A0A553STI4|A0A553STI4_NIACIFormate/nitritetransporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05035PE=4SV=1	tr|A0A553STI4|A0A553STI4_NIACIFormate/nitritetransporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05035PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2756652832031	2	479.800217	957.585882	0.67474	0.00032374	-1.3246	-0.00063553	-0.64983	-0.00031179	479.79965730691725	63.434	0.51076	63.434	63.179	63.69	0					19	12	2	0	0	0	0.027425	1	5740	5740		51.193	0	1	707500			5863	34491	4690	4699	7036	7036					0.1053921748269886
EAKGESMINI	10	Unmodified	_EAKGESMINI_					0	0	0			REV__nc|ENSG00000091129|Q92823-2|NRCAM	REV__nc|ENSG00000091129|Q92823-2|NRCAM	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.6299438476562	2	546.273706	1090.53286	-2.7525	-0.0015036	-1.726	-0.00094287	-4.4785	-0.0024465	546.2724176044219	88.342	0.70927	85.739	85.477	86.186	-2.6027					25	13	3	0	0	0	0.026577	1	7540	7540		67.494	7.3754	1	46323	+		5864	17242	4691	4700	7037	7037					-0.008785283622728457
EAKGGKRPK	9	Unmodified	_EAKGGKRPK_					0	0	0		ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2	ENSG00000198626|ENST00000366574|RYR2	ENSG00000198626|ENST00000366574|RYR2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.8074035644531	2	485.793258	969.571963	0.15498	7.5289E-05	0.79611	0.00038674	0.95109	0.00046203	485.79341484375834	57.101	0.71286	53.756	53.527	54.24	-3.3449					18	13	2	0	0	0	0.027462	1	3691	3691		45.952	7.1458	1	24995			5865	8837	4692	4701	7038	7038					0.08595984774274257
EAKGKVKDI	9	Unmodified	_EAKGKVKDI_					0	0	0		nc|ENSG00000163785|P34925-2|RYK;ENSG00000163785|ENST00000623711|RYK	nc|ENSG00000163785|P34925-2|RYK	nc|ENSG00000163785|P34925-2|RYK	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.7676696777344	2	494.295299	986.576045	0.1395	6.8952E-05	-0.85847	-0.00042434	-0.71898	-0.00035539	494.2947071980423	78.285	1.0493	75.469	74.97	76.019	-2.8165					43	21	3	0	0	0	0.027295	1	6263	6263		64.207	14.766	1	104680			5866	6359	4693	4702	7039	7039					0.08222029477315118
EAKGKVKDI	9	Unmodified	_EAKGKVKDI_					0	0	0		nc|ENSG00000163785|P34925-2|RYK;ENSG00000163785|ENST00000623711|RYK	nc|ENSG00000163785|P34925-2|RYK	nc|ENSG00000163785|P34925-2|RYK	MULTI-MATCH	OvCa9_classI_Rep2	2		2	494.295299	986.576045	-0.10112	-4.9984E-05	-0.52465	-0.00025933	-0.62577	-0.00030932	494.29492559875257	77.023	1.6164	75.234	74.793	76.409	-1.7894	-0.011178	-0.00028836	NaN	64.207	49	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63749			5867	6359	4693	4702							0.08222029477315118
EAKGKVKDI	9	Unmodified	_EAKGKVKDI_					0	0	0		nc|ENSG00000163785|P34925-2|RYK;ENSG00000163785|ENST00000623711|RYK	nc|ENSG00000163785|P34925-2|RYK	nc|ENSG00000163785|P34925-2|RYK	MULTI-MATCH	OvCa9_classI_Rep3	3		2	494.295299	986.576045	-1.0687	-0.00052827	0.50948	0.00025184	-0.55924	-0.00027643	494.29538786118667	77.385	1.3167	75.032	74.681	75.998	-2.3527	-0.21252	0.00073397	NaN	64.207	49	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118410			5868	6359	4693	4702							0.08222029477315118
EAKLVALH	8	Unmodified	_EAKLVALH_					0	0	0			REV__ENSG00000131668|ENST00000253968|BARX1	REV__ENSG00000131668|ENST00000253968|BARX1	MULTI-MSMS	OvCa99_classI_Rep5	1	440.76763916015625	2	440.766178	879.517802	3.0752	0.0013554	-0.42642	-0.00018795	2.6488	0.0011675	440.76579968786945	79.499	1.7915	79.499	79.202	80.993	0					85	43	3	0	0	0	0.72922	1	8150	8150		37.028	2.8559	1	2142300	+		5869	19026	4694	4703	7040	7040					0.07322392622688767
EAKNNQTVL	9	Unmodified	_EAKNNQTVL_					0	0	0			REV__ENSG00000085382|ENST00000262903|HACE1	REV__ENSG00000085382|ENST00000262903|HACE1	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.7721252441406	2	508.772188	1015.52982	-1.1926	-0.00060678	1.5502	0.00078872	0.3576	0.00018194	508.77272018490885	54.421	1.0768	51.174	50.876	51.953	-3.2474					39	20	5	0	0	0	0.21231	1	3368	3368		74.255	6.7614	1	459480	+		5870	17133	4695	4704	7041	7041					0.02267964575219139
EAKQMRVSL	9	Unmodified	_EAKQMRVSL_					0	0	0		tr|A0A553SF71|A0A553SF71_NIACIFructosaminedeglycaseOS=NialliacirculansOX=1397GN=CEQ21_08325PE=4SV=1	tr|A0A553SF71|A0A553SF71_NIACIFructosaminedeglycaseOS=NialliacirculansOX=1397GN=CEQ21_08325PE=4SV=1	tr|A0A553SF71|A0A553SF71_NIACIFructosaminedeglycaseOS=NialliacirculansOX=1397GN=CEQ21_08325PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	531.2910766601562	2	531.292233	1060.56991	-0.74701	-0.00039688	-2.6421	-0.0014038	-3.3892	-0.0018006	531.2908040540239	82.405	1.2442	80.109	79.836	81.081	-2.2963					60	24	4	0	0	0	0.074342	1	4641	4641		104.75	8.7129	1	923840			5871	32999	4696	4705	7042	7042					0.042051879741620724
EAKQMRVSL	9	Unmodified	_EAKQMRVSL_					0	0	0		tr|A0A553SF71|A0A553SF71_NIACIFructosaminedeglycaseOS=NialliacirculansOX=1397GN=CEQ21_08325PE=4SV=1	tr|A0A553SF71|A0A553SF71_NIACIFructosaminedeglycaseOS=NialliacirculansOX=1397GN=CEQ21_08325PE=4SV=1	tr|A0A553SF71|A0A553SF71_NIACIFructosaminedeglycaseOS=NialliacirculansOX=1397GN=CEQ21_08325PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	531.292233	1060.56991	-0.43063	-0.00022879	-2.6686	-0.0014178	-3.0992	-0.0016466	531.2907017882901	81.895	1.5038	80.246	79.716	81.22	-1.6485	0.082244	-0.00015146	NaN	104.75	75	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	377490			5872	32999	4696	4705							0.042051879741620724
EAKQMRVSL	9	Unmodified	_EAKQMRVSL_					0	0	0		tr|A0A553SF71|A0A553SF71_NIACIFructosaminedeglycaseOS=NialliacirculansOX=1397GN=CEQ21_08325PE=4SV=1	tr|A0A553SF71|A0A553SF71_NIACIFructosaminedeglycaseOS=NialliacirculansOX=1397GN=CEQ21_08325PE=4SV=1	tr|A0A553SF71|A0A553SF71_NIACIFructosaminedeglycaseOS=NialliacirculansOX=1397GN=CEQ21_08325PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	531.292233	1060.56991	-1.312	-0.00069705	-2.0958	-0.0011135	-3.4078	-0.0018105	531.2910358383281	82.82	1.6587	80.137	79.684	81.343	-2.6829	-0.027106	0.00045715	NaN	104.75	62	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	778680			5873	32999	4696	4705							0.042051879741620724
EAKQTLIEI	9	Unmodified	_EAKQTLIEI_					0	0	0		ENSG00000145332|ENST00000273963|KLHL8	ENSG00000145332|ENST00000273963|KLHL8	ENSG00000145332|ENST00000273963|KLHL8	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.8018188476562	2	522.800414	1043.58628	-0.60017	-0.00031377	0.86359	0.00045148	0.26342	0.00013772	522.8007514166023	102.85	1.7277	100.65	100.25	101.98	-2.1994					65	32	4	0	0	0	0.29519	1	9264	9264		63.534	2.5619	1	465810			5874	5215	4697	4706	7043	7043					0.06622592411895312
EAKRPSRTE	9	Unmodified	_EAKRPSRTE_					0	0	0			REV__DDX24|p.G289R|1|0.22|ENSG00000089737|chr14:94062475-94062475|C/G|missense_variant	REV__DDX24|p.G289R|1|0.22|ENSG00000089737|chr14:94062475-94062475|C/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.785888671875	2	537.288537	1072.56252	1.5201	0.00081674	-1.5944	-0.00085663	-0.074244	-3.9891E-05	537.2869518115449	124.92	0.54593	124.92	124.74	125.29	0					16	12	2	0	0	0	0.027358	1	14429	14429		40.058	5.8856	1	157760	+		5875	16277	4698	4707	7044	7044					0.029141716981030186
EAKRPSRTE	9	Unmodified	_EAKRPSRTE_					0	0	0			REV__DDX24|p.G289R|1|0.22|ENSG00000089737|chr14:94062475-94062475|C/G|missense_variant	REV__DDX24|p.G289R|1|0.22|ENSG00000089737|chr14:94062475-94062475|C/G|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	537.288537	1072.56252	-0.33563	-0.00018033	-8.7504	-0.0047015	-9.086	-0.0048818	537.2848002459959	125.02	0.54273	124.79	124.57	125.11	-0.2359	0.039224	-0.0030084	NaN	40.058	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28473	+		5876	16277	4698	4707							0.029141716981030186
EAKRPSRTE	9	Unmodified	_EAKRPSRTE_					0	0	0			REV__DDX24|p.G289R|1|0.22|ENSG00000089737|chr14:94062475-94062475|C/G|missense_variant	REV__DDX24|p.G289R|1|0.22|ENSG00000089737|chr14:94062475-94062475|C/G|missense_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	537.288537	1072.56252	2.6789	0.0014393	-9.7728	-0.0052508	-7.0939	-0.0038115	537.2831557263097	125.68	0.56702	124.63	124.42	124.99	-1.0519	-0.11999	-0.004107	NaN	40.058	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20841	+		5877	16277	4698	4707							0.029141716981030186
EAKRPSRTE	9	Unmodified	_EAKRPSRTE_					0	0	0			REV__DDX24|p.G289R|1|0.22|ENSG00000089737|chr14:94062475-94062475|C/G|missense_variant	REV__DDX24|p.G289R|1|0.22|ENSG00000089737|chr14:94062475-94062475|C/G|missense_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	537.288537	1072.56252	-3.1527	-0.0016939	-3.5535	-0.0019093	-6.7062	-0.0036032	537.286601978259	126.07	0.77859	124.66	124.29	125.07	-1.4143	-0.089329	0.0025761	NaN	40.058	27	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21704	+		5878	16277	4698	4707							0.029141716981030186
EAKRREVL	8	Unmodified	_EAKRREVL_					0	0	0		nc|ENSG00000171365|P51795-1|CLCN5;ENSG00000171365|ENST00000376091|CLCN5	nc|ENSG00000171365|P51795-1|CLCN5	nc|ENSG00000171365|P51795-1|CLCN5	MULTI-MSMS	OvCa99_classI_Rep5	1	500.7989196777344	2	500.79854	999.582528	-0.52339	-0.00026211	-0.49737	-0.00024908	-1.0208	-0.00051119	500.7981413002909	42.632	0.7281	42.632	42.242	42.97	0					18	7	3	0	0	0	0.66992	1	2761	2761		49.442	3.4693	1	374200			5879	7191	4699	4708	7045	7045					0.08271967428709104
EAKSTISIA	9	Unmodified	_EAKSTISIA_					0	0	0			REV__PTPN23|p.L1259Afs*14|1|0.14|ENSG00000076201|chr3:47411565-47411566|-/C|frameshift_variant	REV__PTPN23|p.L1259Afs*14|1|0.14|ENSG00000076201|chr3:47411565-47411566|-/C|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	460.2593994140625	2	460.258382	918.502212	0.10178	4.6844E-05	-0.31334	-0.00014422	-0.21156	-9.7371E-05	460.2581873337258	57.188	1.1513	57.188	56.875	58.027	0					72	26	5	0	0	0	0.26076	1	4774	4774		67.494	5.3863	1	4876300	+		5880	16987	4700	4709	7046	7046					0.039700613149989294
EAKSVLAEL	9	Unmodified	_EAKSVLAEL_					0	0	0			REV__nc|ENSG00000171595|Q9GZS0-2|DNAI2	REV__nc|ENSG00000171595|Q9GZS0-2|DNAI2	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.7796630859375	2	480.274032	958.533512	0.092228	4.4295E-05	-1.4893	-0.00071526	-1.397	-0.00067096	480.2729023283767	64.566	0.73626	64.566	64.375	65.111	0					23	17	2	0	0	0	0.027447	1	5924	5924		39.253	3.6345	1	377370	+		5881	21628	4701	4710	7047	7047					0.05258634349092972
EAKTPVLVET	10	Unmodified	_EAKTPVLVET_					0	0	0		nc|ENSG00000173389|Q8N6M8-2|IQCF1;ENSG00000173389|ENST00000310914|IQCF1	nc|ENSG00000173389|Q8N6M8-2|IQCF1	nc|ENSG00000173389|Q8N6M8-2|IQCF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.828125	2	543.805697	1085.59684	0.79628	0.00043302	-0.4229	-0.00022997	0.37339	0.00020305	543.8055754143277	67.788	1.1765	64.298	63.789	64.965	-3.4902					46	23	3	0	0	0	0.026956	1	4961	4961		19.997	8.4858	1	156540			5882	7371	4702	4711	7048	7048					0.05746575066314108
EAKVRHPL	8	Unmodified	_EAKVRHPL_					0	0	0		ENSG00000107738|ENST00000394957|VSIR	ENSG00000107738|ENST00000394957|VSIR	ENSG00000107738|ENST00000394957|VSIR	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.6100158691406	2	475.282526	948.550499	1.4932	0.00070968	-0.58039	-0.00027585	0.91278	0.00043383	475.28209681728674	79.293	0.31705	79.293	79.119	79.436	0					12	7	2	0	0	0	0.028476	1	8087	8087		33.516	0	1	2160100			5883	2611	4703	4712	7049	7049					0.07416599745567964
EALARKAR	8	Unmodified	_EALARKAR_					0	0	0			REV__tr|A0A553SH79|A0A553SH79_NIACIEnergy-couplingfactortransporterATP-bindingproteinEcfA2OS=NialliacirculansOX=1397GN=CEQ21_12350PE=3SV=1	REV__tr|A0A553SH79|A0A553SH79_NIACIEnergy-couplingfactortransporterATP-bindingproteinEcfA2OS=NialliacirculansOX=1397GN=CEQ21_12350PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.2373962402344	2	457.780151	913.545748	-0.22812	-0.00010443	-0.29803	-0.00013643	-0.52615	-0.00024086	457.7799422980717	41.227	0.40364	41.227	41.059	41.462	0					14	8	2	0	0	0	0.028476	1	2555	2555		18.324	0	1	72886	+		5884	29782	4704	4713	7050	7050					0.08551715602800414
EALAWQSL	8	Unmodified	_EALAWQSL_					0	0	0			REV__tr|A0A7D6VV26|A0A7D6VV26_9CLOTPLP-dependentaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03735PE=3SV=1	REV__tr|A0A7D6VV26|A0A7D6VV26_9CLOTPLP-dependentaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03735PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	459.23992919921875	2	459.239993	916.465432	-0.99596	-0.00045738	-3.6821	-0.001691	-4.6781	-0.0021483	459.23821011235117	65.741	0.43707	65.741	65.507	65.945	0					23	10	3	0	0	0	0.36941	1	6054	6054		94.006	8.6469	1	1039200	+		5885	31703	4705	4714	7051	7051					0.0038580948910293955
EALAWQSL	8	Unmodified	_EALAWQSL_					0	0	0			REV__tr|A0A7D6VV26|A0A7D6VV26_9CLOTPLP-dependentaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03735PE=3SV=1	REV__tr|A0A7D6VV26|A0A7D6VV26_9CLOTPLP-dependentaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03735PE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	459.239993	916.465432	-0.99596	-0.00045738	-3.6821	-0.001691	-4.6781	-0.0021483	459.23821011235117	65.741	0.43707	65.741	65.507	65.945	0	0	0	NaN	94.006	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1039200	+		5886	31703	4705	4714							0.0038580948910293955
EALEELYK	8	Unmodified	_EALEELYK_					0	0	0			REV__nc|ENSG00000084676|Q15788-3|NCOA1	REV__nc|ENSG00000084676|Q15788-3|NCOA1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.2713623046875	2	497.758215	993.501877	1.1601	0.00057744	0.79901	0.00039771	1.9591	0.00097516	497.75854839060906	86.029	0.6484	83.382	83.192	83.841	-2.6463					17	12	2	0	0	0	0.028476	1	7274	7274		44.117	0	1	25703	+		5887	17125	4706	4715	7052	7052					0.004866415951369163
EALEELYK	8	Unmodified	_EALEELYK_					0	0	0			REV__nc|ENSG00000084676|Q15788-3|NCOA1	REV__nc|ENSG00000084676|Q15788-3|NCOA1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	497.758215	993.501877	-1.2795	-0.0006369	3.2089	0.0015972	1.9293	0.00096034	497.7595463496631	85.731	1.0516	83.511	82.986	84.037	-2.2204	0.064374	0.0012716	NaN	44.117	26	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30999	+		5888	17125	4706	4715							0.004866415951369163
EALEKRKL	8	Unmodified	_EALEKRKL_					0	0	0		ENSG00000166170|ENST00000299204|BAG5;nc|ENSG00000166170|Q9UL15-2|BAG5	ENSG00000166170|ENST00000299204|BAG5	ENSG00000166170|ENST00000299204|BAG5	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.7663879394531	2	493.803291	985.59203	-0.52265	-0.00025809	-0.59879	-0.00029568	-1.1214	-0.00055377	493.8028528584647	61.841	0.53925	61.841	61.626	62.165	0					23	12	3	0	0	0	0.028476	1	5515	5515		30.504	7.4612	1	348660			5889	6647	4707	4716	7053	7053					0.09865735714231505
EALELAIKL	9	Unmodified	_EALELAIKL_					0	0	0		tr|A0A7D6VNC4|A0A7D6VNC4_9CLOTProbablelipidIIflippaseMurJOS=ClostridiumintestinaleOX=36845GN=murJPE=3SV=1	tr|A0A7D6VNC4|A0A7D6VNC4_9CLOTProbablelipidIIflippaseMurJOS=ClostridiumintestinaleOX=36845GN=murJPE=3SV=1	tr|A0A7D6VNC4|A0A7D6VNC4_9CLOTProbablelipidIIflippaseMurJOS=ClostridiumintestinaleOX=36845GN=murJPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.2817077636719	2	500.307875	998.601197	1.1394	0.00057007	-1.5252	-0.00076305	-0.38572	-0.00019298	500.30701162939084	149.86	1.4497	149.86	149.44	150.89	0					48	28	2	0	0	0	0.027433	1	17563	17563		60.972	9.6365	1	70247			5890	34692	4708	4717	7054	7054					0.10184084279887884
EALEVKVGKN	10	Unmodified	_EALEVKVGKN_					0	0	0			REV__tr|A0A553SKX7|A0A553SKX7_NIACIAsp23/Gls24familyenvelopestressresponseproteinOS=NialliacirculansOX=1397GN=CEQ21_19500PE=3SV=1	REV__tr|A0A553SKX7|A0A553SKX7_NIACIAsp23/Gls24familyenvelopestressresponseproteinOS=NialliacirculansOX=1397GN=CEQ21_19500PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	543.8132934570312	2	543.811313	1085.60807	-1.1845	-0.00064417	-3.7266	-0.0020266	-4.9112	-0.0026707	543.8087265005075	121.27	0.93931	121.07	120.7	121.64	-0.19718					41	18	3	0	0	0	0.52439	1	11718	11718		51.193	3.5354	1	84533	+		5891	30164	4709	4718	7055	7055					0.06869397160471635
EALFKRIE	8	Unmodified	_EALFKRIE_					0	0	0			REV__ENSG00000196422|ENST00000356818|PPP1R26	REV__ENSG00000196422|ENST00000356818|PPP1R26	MULTI-SECPEP	OvCa9_classI_Rep2	2	503.7633972167969	2	503.290017	1004.56548	-0.37177	-0.00018711	0.86554	0.00043562	0.49377	0.00024851	503.29072366586877	92.992	1.0776	91.824	91.55	92.628	-1.168					30	20	3	0	0	0	0.028476	1	8309	8309		58.782	16.386	1	37658	+		5892	22825	4710	4719	7056	7056					0.06338046822907017
EALFRHLQ	8	Unmodified	_EALFRHLQ_					0	0	0			REV__nc|ENSG00000204580|Q08345-6|DDR1	REV__nc|ENSG00000204580|Q08345-6|DDR1	MULTI-MSMS	OvCa9_classI_Rep3	3	507.28045654296875	2	507.279983	1012.54541	-0.55965	-0.0002839	0.42639	0.0002163	-0.13326	-6.76E-05	507.28005450607697	73.387	1.6842	70.899	70.579	72.264	-2.4873					61	33	4	0	0	0	0.7224	1	3566	3566		38.806	0.99462	1	325510	+		5893	29103	4711	4720	7057	7057					0.03964295882940405
EALGGYVTEI	10	Unmodified	_EALGGYVTEI_					0	0	0			REV__tr|A0A7D6ZGF8|A0A7D6ZGF8_9CLOTM23familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18425PE=4SV=1	REV__tr|A0A7D6ZGF8|A0A7D6ZGF8_9CLOTM23familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18425PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.8136596679688	2	526.268947	1050.52334	-0.040142	-2.1125E-05	-2.022	-0.0010641	-2.0621	-0.0010852	526.7695690941522	96.582	0.55492	94.157	93.913	94.468	-2.4256					17	10	3	0	0	0	0.026493	1	8502	8502		74.255	7.8258	1	25803	+		5894	31998	4712	4721	7058	7058					0.00010026623840531101
EALGGYVTEI	10	Unmodified	_EALGGYVTEI_					0	0	0			REV__tr|A0A7D6ZGF8|A0A7D6ZGF8_9CLOTM23familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18425PE=4SV=1	REV__tr|A0A7D6ZGF8|A0A7D6ZGF8_9CLOTM23familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18425PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	526.268947	1050.52334	-0.39548	-0.00020813	-1.3152	-0.00069216	-1.7107	-0.00090029	526.2684549881847	95.324	0.59294	94.296	93.824	94.417	-1.0281	0.095936	0.00027334	NaN	62.107	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24092	+		5895	31998	4712	4721							0.00010026623840531101
EALGGYVTEI	10	Unmodified	_EALGGYVTEI_					0	0	0			REV__tr|A0A7D6ZGF8|A0A7D6ZGF8_9CLOTM23familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18425PE=4SV=1	REV__tr|A0A7D6ZGF8|A0A7D6ZGF8_9CLOTM23familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18425PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	526.268947	1050.52334	-1.3753	-0.00072379	-1.2432	-0.00065427	-2.6185	-0.0013781	526.2680619754864	95.976	0.34177	94.148	93.978	94.32	-1.8286	-0.052364	0.00034912	NaN	62.107	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29934	+		5896	31998	4712	4721							0.00010026623840531101
EALGPETL	8	Unmodified	_EALGPETL_					0	0	0		nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC	nc|ENSG00000290691|A6NGW2|STRCP1	nc|ENSG00000290691|A6NGW2|STRCP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	415.5887145996094	2	415.218726	828.422899	-0.036586	-1.5191E-05	2.1194	0.00088	2.0828	0.00086481	415.21972245069344	58.505	0.90224	55.113	54.651	55.553	-3.392					22	17	2	0	0	0	0.028476	1	3857	3857		30.504	0	1	36053			5897	9370	4713	4722	7059	7059					0.0018241436084736051
EALGRLVKL	9	Unmodified	_EALGRLVKL_					0	0	0		ENSG00000179832|ENST00000326134|MROH1;ENST00000536221.1_8:145484984-145485693:+|nuORF	ENSG00000179832|ENST00000326134|MROH1	ENSG00000179832|ENST00000326134|MROH1	MULTI-MSMS	OvCa99_classI_Rep5	1	499.8228454589844	2	499.821484	997.628415	-0.30861	-0.00015425	0.38453	0.0001922	0.07592	3.7946E-05	499.8215834843777	73.297	1.4869	73.297	72.954	74.441	0					87	37	4	0	0	0	0.3076	1	7170	7170		62.107	5.6736	1	7855800			5898	7843	4714	4723	7060	7060					0.1295061261095043
EALILFYIL	9	Unmodified	_EALILFYIL_					0	0	0			REV__ENST00000486492.5_1_7:149248897-149255702:-|nuORF	REV__ENST00000486492.5_1_7:149248897-149255702:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	547.8261108398438	2	547.828443	1093.64233	-6.0458	-0.003312	2.3793	0.0013034	-3.6665	-0.0020086	547.8295905768617	154.78	1.79	153.77	152.92	154.71	-1.0076					93	40	3	0	0	0	0.6926	1	13335	13335		20.482	2.1574	1	69775	+		5899	26307	4715	4724	7061	7061					0.09925845319389737
EALIRPQPI	9	Unmodified	_EALIRPQPI_					0	0	0			REV__ENST00000361524.7_1_18:22805794-22805878:-|nuORF	REV__ENST00000361524.7_1_18:22805794-22805878:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.8118286132812	2	518.811116	1035.60768	0.56129	0.0002912	-0.83769	-0.0004346	-0.27639	-0.0001434	518.8104326125663	110.25	2.3159	108.65	108.17	110.49	-1.6011					109	43	4	0	0	0	0.40667	1	10192	10192		51.335	0.14276	1	1267600	+		5900	24852	4716	4725	7062	7062					0.09130022231261137
EALKEEKL	8	Unmodified	_EALKEEKL_					0	0	0			REV__tr|A0A553SI95|A0A553SI95_NIACIC5apeptidaseOS=NialliacirculansOX=1397GN=CEQ21_14480PE=3SV=1	REV__tr|A0A553SI95|A0A553SI95_NIACIC5apeptidaseOS=NialliacirculansOX=1397GN=CEQ21_14480PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	480.773681640625	2	480.274032	958.533512	-0.95037	-0.00045644	0.12315	5.9147E-05	-0.82722	-0.00039729	480.27405291885293	44.158	0.39772	44.158	43.952	44.35	0					13	8	2	0	0	0	0.71267	1	2978	2978		40.778	0	1	242700	+		5901	29873	4717	4726	7063	7063					0.05258634349092972
EALKETIEI	9	Unmodified	_EALKETIEI_					0	0	0		tr|A0A7D6VQD3|A0A7D6VQD3_9CLOTCobalt-precorrin-5BC(1)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=cbiDPE=3SV=1	tr|A0A7D6VQD3|A0A7D6VQD3_9CLOTCobalt-precorrin-5BC(1)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=cbiDPE=3SV=1	tr|A0A7D6VQD3|A0A7D6VQD3_9CLOTCobalt-precorrin-5BC(1)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=cbiDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.292236328125	2	523.292422	1044.57029	-0.32968	-0.00017252	0.82087	0.00042955	0.49119	0.00025703	523.2926728380099	142.51	1.1112	141.07	140.73	141.84	-1.4427					47	21	3	0	0	0	0.37182	1	13963	13963		54.722	1.3709	1	70578			5902	34842	4718	4727	7064	7064					0.04978886175013031
EALKKLIP	8	Unmodified	_EALKKLIP_					0	0	0		tr|A0A7D6VP05|A0A7D6VP05_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14755PE=4SV=1	tr|A0A7D6VP05|A0A7D6VP05_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14755PE=4SV=1	tr|A0A7D6VP05|A0A7D6VP05_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14755PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	456.7801208496094	2	456.299853	910.585153	0.27234	0.00012427	-0.41056	-0.00018734	-0.13821	-6.3067E-05	456.2996366000557	79.579	1.6224	77.239	76.852	78.474	-2.3399					43	31	2	0	0	0	0.028476	1	4387	4387		25.45	8.0852	1	61760			5903	34742	4719	4728	7065	7065					0.1262842283365444
EALKLRGRSFM	11	Unmodified	_EALKLRGRSFM_					0	0	0		ENST00000547581.5_1_12:48529049-48539488:+|nuORF;nc|ENSG00000152556|P08237-2|PFKM;ENSG00000152556|ENST00000359794|PFKM;nc|ENSG00000152556|P08237-3|PFKM	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	ENST00000547581.5_1_12:48529049-48539488:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.57904052734375	3	436.579935	1306.71798	0.60728	0.00026512	-4.0521	-0.001769	-3.4448	-0.0015039	436.57800505170314	60.667	1.4199	57.237	56.898	58.318	-3.43					80	28	5	0	0	0	0.49333	1	4114	4114		54.343	2.6163	1	588300			5904	5630	4720	4729	7066	7066					0.07688499227992907
EALKRAELP	9	Unmodified	_EALKRAELP_					0	0	0		ENST00000345133.9_1_18:3451670-3451733:+|nuORF	ENST00000345133.9_1_18:3451670-3451733:+|nuORF	ENST00000345133.9_1_18:3451670-3451733:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.7908325195312	2	513.800749	1025.58694	-1.9505	-0.0010022	-2.9171	-0.0014988	-4.8676	-0.002501	514.2994686708763	88.576	1.2529	85.973	85.327	86.58	-2.6027					25	24	2	0	0	0	0.027426	1	7539	7539		56.721	3.7844	1	49136			5905	10621	4721	4730	7067	7067					0.07517431851601941
EALKRAELP	9	Unmodified	_EALKRAELP_					0	0	0		ENST00000345133.9_1_18:3451670-3451733:+|nuORF	ENST00000345133.9_1_18:3451670-3451733:+|nuORF	ENST00000345133.9_1_18:3451670-3451733:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	513.800749	1025.58694	-0.19327	-9.9302E-05	2.085	0.0010713	1.8917	0.00097197	513.800376051619	88.247	0.40923	86.116	85.906	86.315	-2.1309	0.071562	0.0027198	NaN	56.721	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15176			5906	10621	4721	4730							0.07517431851601941
EALKVSVTH	9	Unmodified	_EALKVSVTH_					0	0	0		ENST00000282382.8_2_5:114915371-114915443:-|nuORF	ENST00000282382.8_2_5:114915371-114915443:-|nuORF	ENST00000282382.8_2_5:114915371-114915443:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.8132019042969	2	492.279649	982.544745	-0.84457	-0.00041577	0.53522	0.00026348	-0.30935	-0.00015229	492.27975966703025	68.199	0.44418	68.199	67.996	68.44	0					17	10	2	0	0	0	0.027462	1	6404	6404		21.96	6.3181	1	387350			5907	10055	4722	4731	7068	7068					0.05277456443241135
EALLLLEDI	9	Unmodified	_EALLLLEDI_					0	0	0		nc|ENSG00000100890|O15091-4|PRORP;nc|ENSG00000100890|O15091-2|PRORP;ENSG00000100890|ENST00000534898|PRORP	nc|ENSG00000100890|O15091-4|PRORP	nc|ENSG00000100890|O15091-4|PRORP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7584838867188	2	514.79734	1027.58013	-1.1735	-0.00060414	2.3301	0.0011995	1.1565	0.00059538	514.7979933882556	42.34	1.1839	39.36	39.116	40.3	-2.9804					59	22	3	0	0	0	0.027462	1	1984	1984		15.642	4.1308	1	200820			5908	2117	4723	4732	7069	7069					0.06744074180369353
EALLLLEDI	9	Unmodified	_EALLLLEDI_					0	0	0		nc|ENSG00000100890|O15091-4|PRORP;nc|ENSG00000100890|O15091-2|PRORP;ENSG00000100890|ENST00000534898|PRORP	nc|ENSG00000100890|O15091-4|PRORP	nc|ENSG00000100890|O15091-4|PRORP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.79734	1027.58013	1.0831	0.00055756	-2.3582	-0.001214	-1.2752	-0.00065646	515.2984301672855	42.002	1.0853	39.292	39.078	40.163	-2.7097	0.076449	-0.0012254	NaN	15.642	46	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66070			5909	2117	4723	4732							0.06744074180369353
EALLNIIKL	9	Unmodified	_EALLNIIKL_					0	0	0		tr|A0A553SQD3|A0A553SQD3_NIACIThioredoxinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07545PE=4SV=1	tr|A0A553SQD3|A0A553SQD3_NIACIThioredoxinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07545PE=4SV=1	tr|A0A553SQD3|A0A553SQD3_NIACIThioredoxinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07545PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.7908325195312	2	513.831517	1025.64848	-1.5332	-0.00078781	0.19579	0.0001006	-1.3374	-0.0006872	513.8314470719849	88.77	1.4444	86.167	85.578	87.023	-2.6027					56	28	3	0	0	0	0.027441	1	7539	7539		45.952	0	1	112110			5910	34148	4724	4733	7070	7070					0.13668363550914364
EALLVKLSKIL	11	Unmodified	_EALLVKLSKIL_					0	0	0			REV__nc|ENSG00000173093|Q8NA47-2|CCDC63	REV__nc|ENSG00000173093|Q8NA47-2|CCDC63	MULTI-MSMS	OvCa9_classI_Rep2	2	409.6080627441406	3	409.607596	1225.80096	0.6889	0.00028218	0.24905	0.00010201	0.93795	0.00038419	409.60766459120623	104.29	12.102	103.72	103.28	115.38	-0.57639					699	244	5	0	0	0	0.68391	1	9853	9853		35.178	1.2566	1	1628000	+		5911	21747	4725	4734	7071	7071					0.19709139227666128
EALLVKLSKIL	11	Unmodified	_EALLVKLSKIL_					0	0	0			REV__nc|ENSG00000173093|Q8NA47-2|CCDC63	REV__nc|ENSG00000173093|Q8NA47-2|CCDC63	MULTI-MSMS	OvCa9_classI_Rep3	3	409.60736083984375	3	409.607596	1225.80096	1.1396	0.00046679	-0.24169	-9.9E-05	0.89792	0.00036779	409.6074659919173	107.95	5.8573	106.76	106.27	112.13	-1.1978					409	114	4	0	0	0	0.63942	2	7825	7825;7984		41.08	4.7576	1	1037400	+		5912	21747	4725	4734	7072;7073	7072					0.19709139227666128
EALLWAGFP	9	Unmodified	_EALLWAGFP_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.3168029785156	2	502.26601	1002.51747	-0.13121	-6.59E-05	-4.0532	-0.0020358	-4.1844	-0.0021017	502.7647565121315	71.088	0.16031	71.088	71.031	71.191	0					5	3	2	0	0	0	0.027462	1	6851	6851		42.474	9.662	1	397920			5913	8514	4726	4735	7074	7074					0.016309729028421316
EALMDLGGFI	10	Unmodified	_EALMDLGGFI_					0	0	0			REV__ENST00000473205.1_1_9:100746884-100764563:+|nuORF	REV__ENST00000473205.1_1_9:100746884-100764563:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	533.271240234375	2	533.267893	1064.52123	2.2033	0.001175	2.4879	0.0013267	4.6912	0.0025017	533.2690630525617	137.23	0.62668	137.23	136.97	137.59	0					30	12	3	0	0	0	0.31157	1	15992	15992		79.451	6.5718	1	276100	+		5914	19424	4727	4736	7075	7075					-0.008447253855820236
EALNEEGNTPL	11	Unmodified	_EALNEEGNTPL_					0	0	0		nc|ENSG00000187984|Q9H560|ANKRD19P;ENST00000473204.5_1_9:95571946-95584543:+|nuORF	nc|ENSG00000187984|Q9H560|ANKRD19P	nc|ENSG00000187984|Q9H560|ANKRD19P	MULTI-MSMS	OvCa99_classI_Rep5	1	593.7842407226562	2	593.78295	1185.55135	2.4448	0.0014517	0.74389	0.00044171	3.1887	0.0018934	593.7832459220957	120.89	0.59621	120.89	120.7	121.29	0					32	13	5	0	0	0	0.15616	1	13891	13891		85.862	3.6213	1	1170000			5915	12406	4728	4737	7076	7076					-0.03400695186701341
EALNLALYL	9	Unmodified	_EALNLALYL_					0	0	0			REV__ENST00000313324.8_2_7:6369545-6369605:-|nuORF	REV__ENST00000313324.8_2_7:6369545-6369605:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.80999755859375	2	510.292225	1018.5699	2.1921	0.0011186	-0.78066	-0.00039837	1.4114	0.00072023	510.29151558119463	108.44	0.4283	108.44	108.2	108.63	0					14	9	2	0	0	0	0.027462	1	12254	12254		21.96	0	1	120470	+		5916	24367	4729	4738	7077	7077					0.06135511245793168
EALNLALYL	9	Unmodified	_EALNLALYL_					0	0	0			REV__ENST00000313324.8_2_7:6369545-6369605:-|nuORF	REV__ENST00000313324.8_2_7:6369545-6369605:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	510.292225	1018.5699	0.020448	1.0434E-05	-0.5949	-0.00030357	-0.57445	-0.00029314	510.2916009843024	108.66	0.49439	108.43	108.17	108.67	-0.22498	-0.013194	7.0182E-05	NaN	29.15	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14032	+		5917	24367	4729	4738							0.06135511245793168
EALNLALYL	9	Unmodified	_EALNLALYL_					0	0	0			REV__ENST00000313324.8_2_7:6369545-6369605:-|nuORF	REV__ENST00000313324.8_2_7:6369545-6369605:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	510.292225	1018.5699	0.62773	0.00032032	-0.5546	-0.00028301	0.073123	3.7314E-05	510.2917300354617	110.06	0.57908	108.46	108.17	108.75	-1.6011	0.015052	0.00011131	NaN	29.15	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16069	+		5918	24367	4729	4738							0.06135511245793168
EALNQLKLA	9	Unmodified	_EALNQLKLA_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000529960.5_1_11:46709721-46722147:-|nuORF;ENST00000524594.1_1_11:46717069-46722147:-|nuORF	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.27520751953125	2	500.295299	998.576045	2.4831	0.0012423	-0.72776	-0.00036409	1.7554	0.00087821	500.2947987126903	75.122	0.44839	75.122	74.92	75.369	0					24	10	3	0	0	0	0.027441	1	7465	7465		58.782	15.918	1	1023600			5919	7526	4730	4739	7078	7078					0.07670029477321805
EALNQLKLA	9	Unmodified	_EALNQLKLA_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000529960.5_1_11:46709721-46722147:-|nuORF;ENST00000524594.1_1_11:46717069-46722147:-|nuORF	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	500.295299	998.576045	-0.84913	-0.00042482	-1.1919	-0.00059632	-2.0411	-0.0010211	500.294635661654	77.205	1.041	75.416	74.843	75.884	-1.7894	0.18355	-0.0015342	NaN	58.782	32	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38708			5920	7526	4730	4739							0.07670029477321805
EALNQLKLA	9	Unmodified	_EALNQLKLA_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000529960.5_1_11:46709721-46722147:-|nuORF;ENST00000524594.1_1_11:46717069-46722147:-|nuORF	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	500.295299	998.576045	-1.1888	-0.00059476	1.4827	0.00074178	0.29387	0.00014702	500.29584945042865	77.36	0.86216	75.007	74.734	75.596	-2.3527	-0.22548	0.001142	NaN	58.782	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85499			5921	7526	4730	4739							0.07670029477321805
EALNQLKLA	9	Unmodified	_EALNQLKLA_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000529960.5_1_11:46709721-46722147:-|nuORF;ENST00000524594.1_1_11:46717069-46722147:-|nuORF	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	500.295299	998.576045	-0.36194	-0.00018108	-0.19838	-9.9249E-05	-0.56032	-0.00028032	500.29481534487905	78.201	0.53041	75.385	75.165	75.696	-2.8165	0.1524	-0.00054004	NaN	58.782	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99883			5922	7526	4730	4739							0.07670029477321805
EALPLNPDN	9	Unmodified	_EALPLNPDN_					0	0	0		ENSG00000205667|ENST00000381130|ARSH	ENSG00000205667|ENST00000381130|ARSH	ENSG00000205667|ENST00000381130|ARSH	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.7705993652344	2	491.745639	981.476725	-0.59564	-0.0002929	0.18652	9.1719E-05	-0.40913	-0.00020119	491.7456887077226	65.327	0.51536	65.327	65.15	65.665	0					23	12	3	0	0	0	0.027462	1	5980	5980		45.972	15.469	1	993500			5923	9079	4731	4740	7079	7079					-0.014754132074358495
EALQRERE	8	Unmodified	_EALQRERE_					0	0	0		ENSG00000177354|ENST00000374144|C10orf71	ENSG00000177354|ENST00000374144|C10orf71	ENSG00000177354|ENST00000374144|C10orf71	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.2865600585938	2	515.767437	1029.52032	0.23889	0.00012321	-2.9111	-0.0015015	-2.6722	-0.0013783	515.7655662678853	84.045	1.8613	81.382	80.583	82.444	-2.6629					81	38	4	0	0	0	0.028476	1	6922	6922		42.396	1.618	1	433010			5924	7673	4732	4741	7080	7080					0.006741962897194753
EALQRERE	8	Unmodified	_EALQRERE_					0	0	0		ENSG00000177354|ENST00000374144|C10orf71	ENSG00000177354|ENST00000374144|C10orf71	ENSG00000177354|ENST00000374144|C10orf71	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.767437	1029.52032	0.17504	9.0279E-05	-2.8072	-0.0014479	-2.6322	-0.0013576	515.7658468316305	83.06	1.5249	81.461	80.958	82.483	-1.5989	0.052055	-0.00012466	NaN	56.721	84	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243180			5925	7673	4732	4741							0.006741962897194753
EALQRERE	8	Unmodified	_EALQRERE_					0	0	0		ENSG00000177354|ENST00000374144|C10orf71	ENSG00000177354|ENST00000374144|C10orf71	ENSG00000177354|ENST00000374144|C10orf71	MULTI-MATCH	OvCa9_classI_Rep3	3		2	515.767437	1029.52032	-0.46194	-0.00023826	-2.2455	-0.0011582	-2.7075	-0.0013964	515.7659728960648	83.645	1.6411	81.384	80.867	82.508	-2.261	-0.025063	0.00045477	NaN	56.721	74	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	479080			5926	7673	4732	4741							0.006741962897194753
EALRALTAL	9	Unmodified	_EALRALTAL_					0	0	0		ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.288818359375	2	479.290017	956.565481	-0.66481	-0.00031864	0.92067	0.00044127	0.25586	0.00012263	479.29031792396887	117.84	0.94633	116.49	116.26	117.21	-1.3444					40	17	3	0	0	0	0.33652	1	11057	11057		58.782	0	1	302860			5927	3997	4733	4742	7081	7081					0.08546046822868902
EALRHTRCV	9	Unmodified	_EALRHTRCV_					0	0	0			REV__ENSG00000224420|ENST00000420022|ADM5	REV__ENSG00000224420|ENST00000420022|ADM5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.3192749023438	2	542.78765	1083.56075	-1.6746	-0.00090898	1.3511	0.00073335	-0.32356	-0.00017563	542.7883703814574	43.392	0.67437	40.385	40.168	40.842	-3.0074					22	12	2	0	0	0	0.027453	1	2072	2072		64.207	18.235	1	71642	+		5928	23358	4734	4743	7082	7082					0.022308394084802785
EALRPLFVE	9	Unmodified	_EALRPLFVE_					0	0	0		ENST00000504490.2_1_4:113278594-113279089:+|nuORF	ENST00000504490.2_1_4:113278594-113279089:+|nuORF	ENST00000504490.2_1_4:113278594-113279089:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3233032226562	2	537.303124	1072.5917	2.2828	0.0012266	-4.0207	-0.0021603	-1.7378	-0.00093374	537.3010047315636	102.87	0.2571	102.87	102.68	102.93	0					9	5	2	0	0	0	0.027462	1	11464	11464		30.318	11.993	1	600710			5929	12876	4735	4744	7083	7083					0.058303159943761784
EALRQRLVL	9	Unmodified	_EALRQRLVL_					0	0	0			REV__INSRR|p.W642R|1|0.22|ENSG00000027644|chr1:156846006-156846006|A/G|missense_variant	REV__INSRR|p.W642R|1|0.22|ENSG00000027644|chr1:156846006-156846006|A/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7937622070312	2	549.343115	1096.67168	2.4743	0.0013592	-1.3181	-0.00072409	1.1562	0.00063515	549.3420157130945	86.659	0.20947	86.659	86.511	86.72	0					6	4	2	0	0	0	0.027462	1	9143	9143		20.947	0	1	70056	+		5930	28308	4736	4745	7084	7084					0.1272080238820763
EALRVPNII	9	Unmodified	_EALRVPNII_					0	0	0		tr|A0A7D6VTN3|A0A7D6VTN3_9CLOTBppUN-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11745PE=4SV=1	tr|A0A7D6VTN3|A0A7D6VTN3_9CLOTBppUN-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11745PE=4SV=1	tr|A0A7D6VTN3|A0A7D6VTN3_9CLOTBppUN-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11745PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.8351440429688	2	512.811116	1023.60768	0.13094	6.7147E-05	0.43417	0.00022265	0.56511	0.0002898	512.811200225086	90.287	0.71109	87.712	87.501	88.212	-2.575					23	13	3	0	0	0	0.027433	1	7772	7772		45.972	0	1	31864			5931	35128	4737	4746	7085	7085					0.09682022231288556
EALSAQIQ	8	Unmodified	_EALSAQIQ_					0	0	0			REV__ENSG00000144357|ENST00000272793|UBR3	REV__ENSG00000144357|ENST00000272793|UBR3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	430.7594909667969	2	430.229625	858.444697	1.0864	0.0004674	-0.44476	-0.00019135	0.64164	0.00027605	430.2290486540618	68.56	1.1327	65.069	64.769	65.901	-3.4902					33	22	2	0	0	0	0.028476	1	5189	5189		42.396	5.237	1	95048	+		5932	19905	4738	4747	7086	7086					0.009812191094397349
EALSQALK	8	Unmodified	_EALSQALK_					0	0	0		ENSG00000119720|ENST00000354366|NRDE2;ENST00000555903.1_1_14:90745249-90755225:-|nuORF	ENSG00000119720|ENST00000354366|NRDE2	ENSG00000119720|ENST00000354366|NRDE2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	430.7594909667969	2	430.247818	858.481082	0.13125	5.6472E-05	-2.8697	-0.0012347	-2.7385	-0.0011782	430.2480137442297	69.361	0.5394	65.88	65.614	66.153	-3.4812					15	10	2	0	0	0	0.028476	1	5189	5189		42.396	5.237	1	41707			5933	3391	4739	4748	7087	7087					0.04618096006151973
EALSWDCFAL	10	Unmodified	_EALSWDCFAL_					0	0	0		nc|ENSG00000239732|Q9NR96-2|TLR9;nc|ENSG00000239732|Q9NR96-5|TLR9;ENSG00000239732|ENST00000360658|TLR9;nc|ENSG00000239732|Q9NR96-3|TLR9;nc|ENSG00000239732|Q9NR96-4|TLR9;PCBP4-TLR9|1|fusion	nc|ENSG00000239732|Q9NR96-2|TLR9	nc|ENSG00000239732|Q9NR96-2|TLR9	MULTI-MSMS	OvCa99_classI_Rep5	1	577.7619018554688	2	577.762975	1153.5114	1.6524	0.0009547	-2.4339	-0.0014062	-0.78152	-0.00045153	577.7614506484232	117.55	1.1184	117.55	117.09	118.2	0					57	23	3	0	0	0	0.6104	1	13499	13499		40.778	5.6261	1	475460			5934	9330	4740	4749	7088	7088					-0.05921913390989175
EALVPYGKDP	10	Unmodified	_EALVPYGKDP_					0	0	0		tr|A0A7D6ZRW4|A0A7D6ZRW4_9CLOTAminotransferaseclassIII-foldpyridoxalphosphate-dependentenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_13750PE=3SV=1	tr|A0A7D6ZRW4|A0A7D6ZRW4_9CLOTAminotransferaseclassIII-foldpyridoxalphosphate-dependentenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_13750PE=3SV=1	tr|A0A7D6ZRW4|A0A7D6ZRW4_9CLOTAminotransferaseclassIII-foldpyridoxalphosphate-dependentenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_13750PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	543.8180541992188	2	544.784764	1087.55498	-0.20624	-0.00011236	-0.58072	-0.00031637	-0.78695	-0.00042872	544.7843316000217	103.07	1.5206	101.55	101.31	102.83	-1.5211					79	28	4	0	0	0	0.026493	1	7126	7126		54.776	1.4249	1	272510			5935	35724	4741	4750	7089	7089					0.014700193778253379
EALVTVQVV	9	Unmodified	_EALVTVQVV_					0	0	0			REV__ENSG00000044446|ENST00000379942|PHKA2	REV__ENSG00000044446|ENST00000379942|PHKA2	MULTI-MSMS	OvCa99_classI_Rep5	1	479.2872009277344	2	479.2844	956.554247	2.0781	0.00099598	-1.4717	-0.00070537	0.60635	0.00029061	479.28624295528454	92.077	0.92985	92.077	91.372	92.301	0					40	21	3	0	0	0	0.44568	1	9920	9920		47.657	5.2612	1	1077000	+		5936	16648	4742	4751	7090	7090					0.07423224728768218
EALWTRILL	9	Unmodified	_EALWTRILL_					0	0	0			REV__GABRQ|p.T557Ifs*5|1|0.04|ENSG00000268089|chrX:152653051-152653052|-/T|frameshift_variant	REV__GABRQ|p.T557Ifs*5|1|0.04|ENSG00000268089|chrX:152653051-152653052|-/T|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.2992553710938	2	557.834591	1113.65463	2.5687	0.0014329	2.2873	0.0012759	4.856	0.0027089	557.8358641254938	122.01	0.46784	122.01	121.71	122.17	0					15	9	2	0	0	0	0.027441	1	14023	14023		45.952	1.8352	1	249770	+		5937	23594	4743	4752	7091	7091					0.10234881782434968
EALYIAGRL	9	Unmodified	_EALYIAGRL_					0	0	0			REV__ENSG00000102572|ENST00000539966|STK24	REV__ENSG00000102572|ENST00000539966|STK24	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.7648620605469	2	503.290017	1004.56548	-0.7224	-0.00036357	2.2405	0.0011276	1.5181	0.00076404	503.2905762276011	94.471	0.74841	92.002	91.762	92.511	-2.4685					20	14	3	0	0	0	0.027461	1	8297	8297		32.812	6.1195	1	49829	+		5938	17563	4744	4753	7092	7092					0.06338046822895649
EAMCDWKD	8	Unmodified	_EAMCDWKD_					0	0	0		ENSG00000101986|ENST00000218104|ABCD1	ENSG00000101986|ENST00000218104|ABCD1	ENSG00000101986|ENST00000218104|ABCD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.1951904296875	2	499.191328	996.368103	-0.49098	-0.00024509	-1.4415	-0.00071959	-1.9325	-0.00096468	499.19009902296756	49.141	0.65583	49.141	48.851	49.507	0					27	14	3	0	0	0	0.028476	1	3658	3658		47.916	0	1	518860			5939	2213	4745	4754	7093	7093					-0.13022663773722343
EAMELTWTI	9	Unmodified	_EAMELTWTI_					0	0	0		ENST00000470240.5_1_3:160122203-160122284:+|nuORF	ENST00000470240.5_1_3:160122203-160122284:+|nuORF	ENST00000470240.5_1_3:160122203-160122284:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.300048828125	2	547.26535	1092.51615	0.16765	9.1748E-05	2.5822	0.0014132	2.7499	0.0015049	547.7686499168439	114.94	0.56662	113.54	113.3	113.87	-1.3977					15	10	2	0	0	0	0.027462	1	10698	10698		26.693	0	1	18703			5940	12360	4746	4755	7094	7094					-0.026410292482296427
EAMKPLPVV	9	Unmodified	_EAMKPLPVV_					0	0	0		ENSG00000152049|ENST00000281830|KCNE4;nc|ENSG00000152049|Q8WWG9|KCNE4	ENSG00000152049|ENST00000281830|KCNE4	ENSG00000152049|ENST00000281830|KCNE4	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.2456359863281	2	492.283346	982.552139	-0.03021	-1.4872E-05	4.1145	0.0020255	4.0843	0.0020106	492.2852573985233	58.216	0.54653	58.216	57.984	58.53	0					22	12	3	0	0	0	0.027462	1	4957	4957		37.159	19.794	1	328820			5941	5599	4747	4756	7095	7095					0.06016472719295507
EAMRAGVLPPP	11	Unmodified	_EAMRAGVLPPP_					0	0	0		nc|ENSG00000055118|Q12809-5|KCNH2;nc|ENSG00000055118|Q12809-7|KCNH2;nc|ENSG00000055118|Q12809-4|KCNH2;ENSG00000055118|ENST00000262186|KCNH2	nc|ENSG00000055118|Q12809-5|KCNH2	nc|ENSG00000055118|Q12809-5|KCNH2	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.276123046875	2	569.307884	1136.60121	-0.13189	-7.5083E-05	-2.273	-0.0012941	-2.4049	-0.0013691	569.8086047886012	56.48	0.361	56.48	56.22	56.581	0					12	8	2	0	0	0	0.02538	1	4678	4678		37.812	0	1	236330			5942	1218	4748	4757	7096	7096					0.038377610082534375
EANFFTSQMI	10	Unmodified	_EANFFTSQMI_					0	0	0		nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;ENST00000496353.1_1_1:1254237-1254918:-|nuORF;ENST00000488042.6_1_1:1250056-1259988:-|nuORF	nc|ENSG00000127054|Q5TA45-4|INTS11	nc|ENSG00000127054|Q5TA45-4|INTS11	MULTI-MSMS	OvCa99_classI_Rep5	1	594.2767944335938	2	594.273706	1186.53286	-0.84242	-0.00050063	3.0523	0.0018139	2.2099	0.0013133	594.2752735412554	65.921	0.62173	65.921	65.707	66.328	0					36	15	3	0	0	0	0.38315	1	6079	6079		70.816	1.1886	1	2605300			5943	3816	4749	4758	7097	7097					-0.052945283622648276
EANGNRAHHL	10	Unmodified	_EANGNRAHHL_					0	0	0			REV__ENST00000579764.5_1_18:21927761-21957497:-|nuORF	REV__ENST00000579764.5_1_18:21927761-21957497:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.798095703125	2	559.776128	1117.5377	0.25104	0.00014053	2.846	0.0015931	3.0971	0.0017337	559.7780163614657	80.483	0.73262	77.772	77.516	78.249	-2.7106					27	14	3	0	0	0	0.026606	1	6596	6596		62.107	12.666	1	35408	+		5944	19739	4750	4759	7098	7098					-0.01636463384625131
EANGNRAHHL	10	Unmodified	_EANGNRAHHL_					0	0	0			REV__ENST00000579764.5_1_18:21927761-21957497:-|nuORF	REV__ENST00000579764.5_1_18:21927761-21957497:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	559.776128	1117.5377	0.77158	0.00043191	0.038438	2.1517E-05	0.81002	0.00045343	559.7778333863338	79.519	0.87145	77.806	77.382	78.254	-1.7128	0.02612	-0.0016483	NaN	62.107	19	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11858	+		5945	19739	4750	4759							-0.01636463384625131
EANKIEALH	9	Unmodified	_EANKIEALH_					0	0	0		nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1	nc|ENSG00000118007|Q8WVM7-2|STAG1	nc|ENSG00000118007|Q8WVM7-2|STAG1	MULTI-SECPEP	OvCa9_classI_Rep2	2	512.8138427734375	2	512.774731	1023.53491	-0.87007	-0.00044615	1.8459	0.00094655	0.97587	0.0005004	512.7753795543445	63.663	2.6678	60.918	60.004	62.672	-2.7444					94	50	3	0	0	0	0.027461	1	4819	4819		49.442	8.6634	1	40387			5946	3285	4751	4760	7099	7099					0.024082684378413433
EANNEFQL	8	Unmodified	_EANNEFQL_					0	0	0			REV__SPTA1|p.V2114Gfs*21|1|0.16|ENSG00000163554|chr1:158620246-158620247|-/ATCTTCTAAGTCTCCTTTTTCTAGGTCATTTACCC|frameshift_variant	REV__SPTA1|p.V2114Gfs*21|1|0.16|ENSG00000163554|chr1:158620246-158620247|-/ATCTTCTAAGTCTCCTTTTTCTAGGTCATTTACCC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	482.2800598144531	2	482.722164	963.429775	-1.4114	-0.00068132	-1.675	-0.00080855	-3.0864	-0.0014899	482.7212642854137	108.82	0.31209	107.09	106.92	107.23	-1.7256					8	5	2	0	0	0	0.02559	1	9974	9974		98.629	16.324	1	11900	+		5947	29449	4752	4761	7100	7100					-0.05340272758576248
EANPFISVL	9	Unmodified	_EANPFISVL_					0	0	0			REV__tr|A0A553SJX7|A0A553SJX7_NIACIMBLfoldmetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_17525PE=4SV=1	REV__tr|A0A553SJX7|A0A553SJX7_NIACIMBLfoldmetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_17525PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	495.7519836425781	2	495.26875	988.522947	0.060063	2.9747E-05	-4.2467	-0.0021033	-4.1867	-0.0020735	495.26634174901375	70.058	0.94872	67.487	66.715	67.663	-2.5707					32	18	2	0	0	0	0.027462	1	5605	5605		54.776	6.8607	1	102560	+		5948	30053	4753	4762	7101	7101					0.028226516946460833
EANQKKYF	8	Unmodified	_EANQKKYF_					0	0	0		ACTRT2|p.L212Sfs*28|1|0.19|ENSG00000169717|chr1:3022319-3022319|T/-|frameshift_variant;ENSG00000169717|ENST00000378404|ACTRT2	ACTRT2|p.L212Sfs*28|1|0.19|ENSG00000169717|chr1:3022319-3022319|T/-|frameshift_variant	ACTRT2|p.L212Sfs*28|1|0.19|ENSG00000169717|chr1:3022319-3022319|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.8035888671875	2	514.263999	1026.51345	-1.3995	-0.00071972	1.4013	0.00072065	0.0018204	9.3617E-07	514.2640108570675	95.492	0.40059	93.023	92.711	93.111	-2.4685					9	7	2	0	0	0	0.028476	1	8392	8392		30.504	1.3541	1	9752.4			5949	26	4754	4763	7102	7102					0.0012488340912568674
EANRIEAIA	9	Unmodified	_EANRIEAIA_					0	0	0			REV__tr|A0A553SLE8|A0A553SLE8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20505PE=4SV=1	REV__tr|A0A553SLE8|A0A553SLE8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20505PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	493.765869140625	2	493.766906	985.519259	-0.73998	-0.00036538	-0.23368	-0.00011539	-0.97367	-0.00048076	493.76710400194355	68.35	1.8857	65.73	65.18	67.066	-2.6203					109	37	6	0	0	0	0.37135	1	5374	5374		54.776	1.4249	1	960960	+		5950	30219	4755	4764	7103	7103					0.025919819207956607
EANRLSLKN	9	Unmodified	_EANRLSLKN_					0	0	0		ENSG00000131732|ENST00000407610|ZCCHC9	ENSG00000131732|ENST00000407610|ZCCHC9	ENSG00000131732|ENST00000407610|ZCCHC9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.3104858398438	2	522.793455	1043.57236	-1.309	-0.00068435	2.1238	0.0011103	0.81475	0.00042594	522.7944818294588	53.706	1.0746	50.459	49.955	51.03	-3.2474					30	20	2	0	0	0	0.027137	1	3296	3296		90.37	8.0648	1	59099			5951	4086	4756	4765	7104	7104					0.05231359703475391
EANSINRSLLA	11	Unmodified	_EANSINRSLLA_					0	0	0		nc|ENSG00000136883|Q96FN5|KIF12;ENSG00000136883|ENST00000640217|KIF12	nc|ENSG00000136883|Q96FN5|KIF12	nc|ENSG00000136883|Q96FN5|KIF12	MULTI-SECPEP	OvCa9_classI_Rep4_	4	594.2996826171875	2	594.322576	1186.6306	0.18035	0.00010719	-4.4067	-0.002619	-4.2264	-0.0025118	594.3213443617136	76.495	0.42114	73.556	73.27	73.691	-2.9389					11	8	2	0	0	0	0.024982	1	6055	6055		91.265	11.553	1	24456			5952	4528	4757	4766	7105	7105					0.044749965581104334
EAPDCIDE	8	Unmodified	_EAPDCIDE_					0	0	0			REV__ENSG00000173917|ENST00000330070|HOXB2	REV__ENSG00000173917|ENST00000330070|HOXB2	MULTI-MSMS	OvCa99_classI_Rep5	1	446.1739196777344	2	446.173658	890.332763	1.8742	0.00083622	-3.1924	-0.0014244	-1.3182	-0.00058816	446.1723527944217	123.62	0.64108	123.62	123.28	123.92	0					32	13	3	0	0	0	0.69415	1	14248	14248		44.531	5.5096	1	461370	+		5953	21808	4758	4767	7106	7106					-0.11679003029883006
EAPDCLED	8	Unmodified	_EAPDCLED_					0	0	0		ENSG00000144395|ENST00000389175|CCDC150;ENST00000471033.5_1_2:197521363-197521654:+|nuORF;ENST00000471546.5_1_2:197504460-197531652:+|nuORF	ENSG00000144395|ENST00000389175|CCDC150	ENSG00000144395|ENST00000389175|CCDC150	MULTI-MSMS	OvCa99_classI_Rep5	1	446.17327880859375	2	446.173658	890.332763	1.8742	0.00083622	-3.1924	-0.0014244	-1.3182	-0.00058816	446.1723527944217	123.62	0.64108	123.62	123.28	123.92	0					32	13	3	0	0	0	0.73626	1	14271	14271		33.516	0	1	461370			5954	5148	4759	4768	7107	7107					-0.11679003029883006
EAPDGSQASSN	11	Unmodified	_EAPDGSQASSN_					0	0	0		nc|ENSG00000173406|O75553-3|DAB1;nc|ENSG00000173406|O75553-4|DAB1;nc|ENSG00000173406|O75553-5|DAB1;ENSG00000173406|ENST00000371236|DAB1;nc|ENSG00000173406|O75553|DAB1	nc|ENSG00000173406|O75553-3|DAB1	nc|ENSG00000173406|O75553-3|DAB1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.3223876953125	2	531.72035	1061.42615	-2.3949	-0.0012734	0.99286	0.00052792	-1.402	-0.00074548	531.7206009606571	119.07	0.40826	117.72	117.52	117.93	-1.3444					11	7	2	0	0	0	0.025306	1	11188	11188		30.569	9.6219	1	12954			5955	7373	4760	4769	7108	7108					-0.1021098732308019
EAPDSITWKPY	11	Unmodified	_EAPDSITWKPY_					0	0	0		ENST00000477269.5_1_13:113777169-113798523:+|nuORF;F10|p.V424Efs*20|1|0.22|ENSG00000126218|chr13:113149318-113149319|-/TGAAGCATACATATGCGAAAAATTATTTG|frameshift_variant;ENSG00000126218|ENST00000375559|F10	ENST00000477269.5_1_13:113777169-113798523:+|nuORF	ENST00000477269.5_1_13:113777169-113798523:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.214111328125	3	436.215316	1305.62412	0.26482	0.00011552	-3.2731	-0.0014278	-3.0083	-0.0013123	436.2140024294141	39.204	2.2798	36.277	35.849	38.129	-2.9264					140	44	5	0	0	0	0.4397	2	1615	1591;1615		58.246	7.455	1	1076000			5956	3772	4761	4770	7109;7110	7110					-0.016469413932782118
EAPFLIVI	8	Unmodified	_EAPFLIVI_					0	0	0			REV__nc|ENSG00000121904|Q7Z408-2|CSMD2	REV__nc|ENSG00000121904|Q7Z408-2|CSMD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	452.2646484375	2	451.273304	900.532055	0.99371	0.00044843	-4.0652	-0.0018345	-3.0715	-0.0013861	451.2713455656347	74.346	0.82141	74.346	74.02	74.841	0					41	20	3	0	0	0	0.028476	1	7381	7381		21.702	7.927	1	2593800	+		5957	28822	4762	4771	7111	7111					0.07781045051001456
EAPFLIVI	8	Unmodified	_EAPFLIVI_					0	0	0			REV__nc|ENSG00000121904|Q7Z408-2|CSMD2	REV__nc|ENSG00000121904|Q7Z408-2|CSMD2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	451.273304	900.532055	-0.73046	-0.00032964	-3.6441	-0.0016445	-4.3746	-0.0019741	451.2715353048072	76.906	1.14	74.534	74.243	75.383	-2.3715	0.094112	0.00016712	NaN	21.702	54	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231340	+		5958	28822	4762	4771							0.07781045051001456
EAPLQGSVTK	10	Unmodified	_EAPLQGSVTK_					0	0	0		ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1;nc|ENSG00000133606|Q9UHC7-4|MKRN1;nc|ENSG00000238222|Q13434|MKRN4P	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	514.3289794921875	2	515.282389	1028.55022	-0.072641	-3.7431E-05	0.36692	0.00018907	0.29428	0.00015164	515.2822391213891	122.64	0.74097	122.42	122.17	122.91	-0.21803					17	14	2	0	0	0	0.026931	1	11893	11893		37.812	3.639	1	13749			5959	4226	4763	4772	7112	7112					0.03709135235044414
EAPRPDPSTSV	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))EAPRPDPSTSV_					1	0	0			REV__ENST00000462414.1_1_22:32229860-32233090:+|nuORF	REV__ENST00000462414.1_1_22:32229860-32233090:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	599.2935791015625	2	599.290942	1196.56733	0.25651	0.00015372	1.6716	0.0010018	1.9281	0.0011555	599.2919763341604	72.863	2.0326	72.863	72.333	74.366	0					117	51	5	0	0	0	0.5804	1	7133	7133		46.457	7.2039	1	28118000	+		5960	26112	4764	4773	7113	7113					-0.02308988949812374
EAPRPDPSTSV	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))EAPRPDPSTSV_					1	0	0			REV__ENST00000462414.1_1_22:32229860-32233090:+|nuORF	REV__ENST00000462414.1_1_22:32229860-32233090:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	599.290942	1196.56733	1.0649	0.00063817	2.48	0.0014862	3.5449	0.0021244	599.291460601885	75.333	2.1397	72.922	72.536	74.676	-2.4106	0.029754	0.00088695	NaN	46.457	87	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123780	+		5961	26112	4764	4773							-0.02308988949812374
EAPTPVAAAP	10	Unmodified	_EAPTPVAAAP_					0	0	0			REV__nc|ENSG00000127603|O94854|MACF1	REV__nc|ENSG00000127603|O94854|MACF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.2355041503906	2	462.245275	922.475997	-1.8213	-0.0008419	1.4687	0.00067891	-0.35262	-0.000163	462.2454779793889	72.691	1.2111	69.295	69.009	70.22	-3.3961					61	24	5	0	0	0	0.026752	1	5686	5686		44.117	15.863	1	174520	+		5962	28838	4765	4774	7114	7114					0.011657921435130447
EAPTPVAAAP	10	Unmodified	_EAPTPVAAAP_					0	0	0			REV__nc|ENSG00000127603|O94854|MACF1	REV__nc|ENSG00000127603|O94854|MACF1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	462.245275	922.475997	0.38043	0.00017585	-0.57459	-0.0002656	-0.19417	-8.9752E-05	462.2449983515524	71.738	1.1516	69.231	68.752	69.903	-2.5071	-0.031919	-0.00096056	NaN	34.173	35	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47785	+		5963	28838	4765	4774							0.011657921435130447
EAQAKECSH	9	Unmodified	_EAQAKECSH_					0	0	0		chr14:24136301-24136733|128|11.52|0.43|4.74|+|0|PSME1,None|1	chr14:24136301-24136733|128|11.52|0.43|4.74|+|0|PSME1,None|1	chr14:24136301-24136733|128|11.52|0.43|4.74|+|0|PSME1,None|1	MULTI-SECPEP	OvCa9_classI_Rep3	3	502.2832336425781	2	501.719098	1001.42364	-0.84631	-0.00042461	2.0276	0.0010173	1.1812	0.00059266	501.71991887562905	94.819	0.64969	92.923	92.662	93.311	-1.8956					20	12	2	0	0	0	0.027455	1	6164	6164		34.173	5.023	1	29981			5964	344	4766	4775	7115	7115					-0.07701114261749353
EAQEEAKKI	9	Unmodified	_EAQEEAKKI_					0	0	0			REV__tr|A0A7D6W402|A0A7D6W402_9CLOTFlotillinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11670PE=4SV=1	REV__tr|A0A7D6W402|A0A7D6W402_9CLOTFlotillinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11670PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.778564453125	2	523.279846	1044.54514	-0.6886	-0.00036033	-0.68519	-0.00035855	-1.3738	-0.00071888	523.2796687506648	76.424	2.9706	73.485	72.741	75.711	-2.9389					194	61	7	0	0	0	0.2422	1	6035	6035		69.628	5.4204	1	14882000	+		5965	31929	4767	4776	7116	7116					0.02464831372435583
EAQEKVVDQL	10	Unmodified	_EAQEKVVDQL_					0	0	0		tr|A0A553SIZ0|A0A553SIZ0_NIACI6-phosphofructokinaseOS=NialliacirculansOX=1397GN=CEQ21_15765PE=4SV=1	tr|A0A553SIZ0|A0A553SIZ0_NIACI6-phosphofructokinaseOS=NialliacirculansOX=1397GN=CEQ21_15765PE=4SV=1	tr|A0A553SIZ0|A0A553SIZ0_NIACI6-phosphofructokinaseOS=NialliacirculansOX=1397GN=CEQ21_15765PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	579.8049926757812	2	579.803685	1157.59282	1.7642	0.0010229	0.68978	0.00039994	2.454	0.0014228	579.803823104449	82.306	0.46393	82.306	82.101	82.565	0					22	10	4	0	0	0	0.48398	1	8521	8521		56.434	1.6575	1	1000600			5966	33443	4768	4777	7117	7117					0.02032485572613041
EAQEKVVDQL	10	Unmodified	_EAQEKVVDQL_					0	0	0		tr|A0A553SIZ0|A0A553SIZ0_NIACI6-phosphofructokinaseOS=NialliacirculansOX=1397GN=CEQ21_15765PE=4SV=1	tr|A0A553SIZ0|A0A553SIZ0_NIACI6-phosphofructokinaseOS=NialliacirculansOX=1397GN=CEQ21_15765PE=4SV=1	tr|A0A553SIZ0|A0A553SIZ0_NIACI6-phosphofructokinaseOS=NialliacirculansOX=1397GN=CEQ21_15765PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	579.803685	1157.59282	-2.0284	-0.0011761	1.8177	0.0010539	-0.21068	-0.00012215	579.8044288436367	84.744	0.49078	82.483	82.357	82.848	-2.261	0.0413	0.0010809	NaN	56.434	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20689			5967	33443	4768	4777							0.02032485572613041
EAQEKVVDQL	10	Unmodified	_EAQEKVVDQL_					0	0	0		tr|A0A553SIZ0|A0A553SIZ0_NIACI6-phosphofructokinaseOS=NialliacirculansOX=1397GN=CEQ21_15765PE=4SV=1	tr|A0A553SIZ0|A0A553SIZ0_NIACI6-phosphofructokinaseOS=NialliacirculansOX=1397GN=CEQ21_15765PE=4SV=1	tr|A0A553SIZ0|A0A553SIZ0_NIACI6-phosphofructokinaseOS=NialliacirculansOX=1397GN=CEQ21_15765PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	579.803685	1157.59282	0.75558	0.00043809	0.68076	0.00039471	1.4363	0.0008328	579.8042466955326	85.182	0.24931	82.536	82.361	82.61	-2.6463	0.094421	-0.00023755	NaN	56.434	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23755			5968	33443	4768	4777							0.02032485572613041
EAQEVTIARA	10	Unmodified	_EAQEVTIARA_					0	0	0		nc|ENSG00000162819|Q5VW32-2|BROX;ENSG00000162819|ENST00000340934|BROX	nc|ENSG00000162819|Q5VW32-2|BROX	nc|ENSG00000162819|Q5VW32-2|BROX	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.3203735351562	2	544.290745	1086.56694	-0.24266	-0.00013208	-0.87271	-0.00047501	-1.1154	-0.00060709	544.290172922497	60.38	0.94561	60.38	60.039	60.984	0					43	22	3	0	0	0	0.02658	1	5285	5285		64.207	5.4253	1	1956200			5969	6238	4769	4778	7118	7118					0.027116361210119067
EAQEVTIARA	10	Unmodified	_EAQEVTIARA_					0	0	0		nc|ENSG00000162819|Q5VW32-2|BROX;ENSG00000162819|ENST00000340934|BROX	nc|ENSG00000162819|Q5VW32-2|BROX	nc|ENSG00000162819|Q5VW32-2|BROX	MULTI-MATCH	OvCa9_classI_Rep2	2		2	544.290745	1086.56694	-1.6003	-0.00087101	-0.40644	-0.00022122	-2.0067	-0.0010922	544.2916297149145	63.523	1.3653	60.779	60.266	61.632	-2.7444	0.15033	0.00051372	NaN	64.207	35	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89379			5970	6238	4769	4778							0.027116361210119067
EAQGEAQKPQ	10	Unmodified	_EAQGEAQKPQ_					0	0	0		nc|ENSG00000278845|Q9BRJ2|MRPL45;ENSG00000278845|ENST00000613675|MRPL45	nc|ENSG00000278845|Q9BRJ2|MRPL45	nc|ENSG00000278845|Q9BRJ2|MRPL45	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.82861328125	2	543.264727	1084.5149	-0.50366	-0.00027362	-2.1941	-0.001192	-2.6978	-0.0014656	543.2635119790231	55.128	0.20982	55.128	55.023	55.233	0					7	4	2	0	0	0	0.026803	1	4492	4492		40.058	0	1	274660			5971	9594	4770	4779	7119	7119					-0.0239752729276006
EAQKFREKL	9	Unmodified	_EAQKFREKL_					0	0	0		ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1	ENSG00000168394|ENST00000354258|TAP1	ENSG00000168394|ENST00000354258|TAP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.8417358398438	2	574.824755	1147.63496	1.8687	0.0010741	-0.18301	-0.0001052	1.6856	0.00096895	574.8247331869098	76.572	0.76366	76.572	76.28	77.044	0					56	18	5	0	0	0	0.027462	1	7640	7640		18.262	0	1	1630300			5972	6901	4771	4780	7120	7120					0.0670450577167685
EAQKKAIKN	9	Unmodified	_EAQKKAIKN_					0	0	0		tr|A0A7D6VY90|A0A7D6VY90_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15850PE=4SV=1	tr|A0A7D6VY90|A0A7D6VY90_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15850PE=4SV=1	tr|A0A7D6VY90|A0A7D6VY90_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15850PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	514.3104858398438	2	515.306198	1028.59784	0.91581	0.00047192	-2.9364	-0.0015131	-2.0206	-0.0010412	515.3040651380506	105.56	0.98907	104.21	103.68	104.67	-1.3482					41	18	3	0	0	0	0.027447	1	7363	7363		39.253	3.6345	1	43169			5973	35323	4772	4781	7121	7121					0.08468834225891442
EAQKKAIKN	9	Unmodified	_EAQKKAIKN_					0	0	0		tr|A0A7D6VY90|A0A7D6VY90_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15850PE=4SV=1	tr|A0A7D6VY90|A0A7D6VY90_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15850PE=4SV=1	tr|A0A7D6VY90|A0A7D6VY90_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15850PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.306198	1028.59784	-0.38092	-0.00019629	-2.5067	-0.0012917	-2.8876	-0.001488	515.3047371085587	104.87	0.8894	104.3	103.87	104.76	-0.57639	0.04298	0.00020824	NaN	39.253	52	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35472			5974	35323	4772	4781							0.08468834225891442
EAQKKAVTQP	10	Unmodified	_EAQKKAVTQP_					0	0	0			REV__ENSG00000196440|ENST00000423738|ARMCX4	REV__ENSG00000196440|ENST00000423738|ARMCX4	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.3092651367188	2	550.308938	1098.60332	-0.3743	-0.00020598	0.1603	8.8216E-05	-0.214	-0.00011776	550.3089440575569	51.716	1.5135	48.543	48.123	49.637	-3.1734					70	29	4	0	0	0	0.40664	1	3053	3053		67.494	14.557	1	490020	+		5975	22826	4773	4782	7122	7122					0.05796513017708094
EAQKKAVTQP	10	Unmodified	_EAQKKAVTQP_					0	0	0			REV__ENSG00000196440|ENST00000423738|ARMCX4	REV__ENSG00000196440|ENST00000423738|ARMCX4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	550.308938	1098.60332	-0.77202	-0.00042485	0.7655	0.00042126	-0.0065174	-3.5866E-06	550.3091120585985	51.439	1.4386	48.626	48.005	49.444	-2.8129	0.04151	0.00047369	NaN	67.494	50	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100200	+		5976	22826	4773	4782							0.05796513017708094
EAQKKAVTQP	10	Unmodified	_EAQKKAVTQP_					0	0	0			REV__ENSG00000196440|ENST00000423738|ARMCX4	REV__ENSG00000196440|ENST00000423738|ARMCX4	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	550.308938	1098.60332	-0.3743	-0.00020598	0.1603	8.8216E-05	-0.214	-0.00011776	550.3089440575569	51.716	1.5135	48.543	48.123	49.637	-3.1734	-0.04151	-0.0001924	NaN	67.494	70	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	490020	+		5977	22826	4773	4782							0.05796513017708094
EAQKLGVI	8	Unmodified	_EAQKLGVI_					0	0	0		tr|A0A7D7A0Q9|A0A7D7A0Q9_9CLOTGlutamatesynthaselargesubunitOS=ClostridiumintestinaleOX=36845GN=gltBPE=3SV=1	tr|A0A7D7A0Q9|A0A7D7A0Q9_9CLOTGlutamatesynthaselargesubunitOS=ClostridiumintestinaleOX=36845GN=gltBPE=3SV=1	tr|A0A7D7A0Q9|A0A7D7A0Q9_9CLOTGlutamatesynthaselargesubunitOS=ClostridiumintestinaleOX=36845GN=gltBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	429.2594299316406	2	429.258185	856.501818	0.15131	6.4951E-05	0.082277	3.5318E-05	0.23359	0.00010027	429.2580210656624	63.319	1.1578	59.844	59.577	60.735	-3.475					38	23	2	0	0	0	0.45246	1	4450	4450		82.305	0	1	243920			5978	36005	4774	4783	7123	7123					0.0678268638581585
EAQKLGVI	8	Unmodified	_EAQKLGVI_					0	0	0		tr|A0A7D7A0Q9|A0A7D7A0Q9_9CLOTGlutamatesynthaselargesubunitOS=ClostridiumintestinaleOX=36845GN=gltBPE=3SV=1	tr|A0A7D7A0Q9|A0A7D7A0Q9_9CLOTGlutamatesynthaselargesubunitOS=ClostridiumintestinaleOX=36845GN=gltBPE=3SV=1	tr|A0A7D7A0Q9|A0A7D7A0Q9_9CLOTGlutamatesynthaselargesubunitOS=ClostridiumintestinaleOX=36845GN=gltBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	428.2696533203125	2	429.258185	856.501818	0.65114	0.00027951	-0.34535	-0.00014824	0.30579	0.00013126	429.2579493632781	57.469	1.0667	54.124	53.832	54.899	-3.3449					24	20	2	0	0	0	0.028476	1	3724	3724		25.45	8.0852	1	18096			5979	36005	4774	4783	7124	7124					0.0678268638581585
EAQKLGVI	8	Unmodified	_EAQKLGVI_					0	0	0		tr|A0A7D7A0Q9|A0A7D7A0Q9_9CLOTGlutamatesynthaselargesubunitOS=ClostridiumintestinaleOX=36845GN=gltBPE=3SV=1	tr|A0A7D7A0Q9|A0A7D7A0Q9_9CLOTGlutamatesynthaselargesubunitOS=ClostridiumintestinaleOX=36845GN=gltBPE=3SV=1	tr|A0A7D7A0Q9|A0A7D7A0Q9_9CLOTGlutamatesynthaselargesubunitOS=ClostridiumintestinaleOX=36845GN=gltBPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	429.258185	856.501818	-2.1906	-0.00094033	3.5699	0.0015324	1.3793	0.00059207	429.25904238283726	62.67	1.4504	59.925	59.498	60.949	-2.7444	0.040513	0.0026513	NaN	82.305	46	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53591			5980	36005	4774	4783							0.0678268638581585
EAQKLQEAL	9	Unmodified	_EAQKLQEAL_					0	0	0			REV__nc|ENSG00000219481|Q3BBV0|NBPF1;REV__ENSG00000270629|ENST00000619423|NBPF14	REV__nc|ENSG00000219481|Q3BBV0|NBPF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.2813110351562	2	515.282389	1028.55022	-0.4434	-0.00022848	4.0092	0.0020659	3.5658	0.0018374	515.2843619076245	104.99	1.6704	102.87	102.53	104.2	-2.1192					54	32	2	0	0	0	0.46356	1	9525	9525		45.972	0	1	585400	+		5981	23333;23605	4775	4784	7125	7125					0.03709135235044414
EAQLCCEGALE	11	Unmodified	_EAQLCCEGALE_					0	0	0		ENSG00000020181|ENST00000412232|ADGRA2;nc|ENSG00000020181|Q96PE1-2|ADGRA2	ENSG00000020181|ENST00000412232|ADGRA2	ENSG00000020181|ENST00000412232|ADGRA2	MULTI-MSMS	OvCa9_classI_Rep2	2	583.2490844726562	2	583.246831	1164.47911	0.67489	0.00039363	2.9109	0.0016978	3.5858	0.0020914	583.2484035489165	130.41	1.8783	130.18	129.81	131.69	-0.22696					86	37	3	0	0	0	0.68757	1	12876	12876		33.922	4.7516	1	516500			5982	1021	4776	4785	7126	7126					-0.09655068856272919
EAQLGRGSFM	10	Oxidation (M)	_EAQLGRGSFM(Oxidation (M))_		EAQLGRGSFM(1)		EAQLGRGSFM(62)	0	0	1		ENSG00000121022|ENST00000357849|COPS5;ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF	ENSG00000121022|ENST00000357849|COPS5	ENSG00000121022|ENST00000357849|COPS5	MULTI-MSMS	OvCa99_classI_Rep5	1	556.2627563476562	2	556.263673	1110.51279	1.702	0.00094679	-3.3961	-0.0018891	-1.6941	-0.00094235	556.261601930518	130.47	1.0959	130.47	130.01	131.1	0					50	22	3	0	0	0	0.44722	1	15160	15160		61.691	10.499	1	710540			5983	3465	4777	4786	7127	7127		110			-0.03804279302221403
EAQLLNKQI	9	Unmodified	_EAQLLNKQI_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.3333740234375	2	528.806031	1055.59751	-0.90736	-0.00047982	3.2322	0.0017092	2.3249	0.0012294	528.8065858161738	58.235	0.35078	54.89	54.698	55.049	-3.3449					10	6	2	0	0	0	0.027462	1	3812	3812		14.137	0	1	18017			5984	6781	4778	4787	7128	7128					0.07193414506036788
EAQNYYGQ	8	Unmodified	_EAQNYYGQ_					0	0	0			REV__ENSG00000188064|ENST00000339464|WNT7B	REV__ENSG00000188064|ENST00000339464|WNT7B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.78857421875	2	486.706514	971.398475	-0.030058	-1.463E-05	-2.371	-0.001154	-2.4011	-0.0011686	486.70532188369305	76.168	0.89391	73.229	72.985	73.879	-2.9389					27	18	3	0	0	0	0.028476	1	6063	6063		42.474	31.609	1	98136	+		5985	22688	4779	4788	7129	7129					-0.08836845792666281
EAQNYYGQ	8	Unmodified	_EAQNYYGQ_					0	0	0			REV__ENSG00000188064|ENST00000339464|WNT7B	REV__ENSG00000188064|ENST00000339464|WNT7B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	486.706514	971.398475	-0.42911	-0.00020885	-2.7323	-0.0013298	-3.1614	-0.0015387	486.7050491242075	75.436	0.51094	73.582	73.376	73.887	-1.854	0.17668	-0.00025668	NaN	31.955	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14457	+		5986	22688	4779	4788							-0.08836845792666281
EAQQDAPPLL	10	Unmodified	_EAQQDAPPLL_					0	0	0			REV__chr10:55166651-55179601|110|11.66|0.0|20.15|-|0|TE_info:LTR27D,LTR27D_dup169,ERV1,LTR,donor,+,55179601,55179892|PCDH15,None|2	REV__chr10:55166651-55179601|110|11.66|0.0|20.15|-|0|TE_info:LTR27D,LTR27D_dup169,ERV1,LTR,donor,+,55179601,55179892|PCDH15,None|2	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.8511962890625	2	541.279846	1080.54514	1.8328	0.00099208	-0.21033	-0.00011385	1.6225	0.00087823	541.2792955131633	91.35	0.28918	91.35	91.213	91.502	0					10	6	2	0	0	0	0.026606	1	9851	9851		52.937	22.619	1	355930	+		5987	15847	4780	4789	7130	7130					0.008088313724329055
EAQQQQHL	8	Unmodified	_EAQQQQHL_					0	0	0		ENSG00000005339|ENST00000262367|CREBBP;nc|ENSG00000005339|Q92793-2|CREBBP	ENSG00000005339|ENST00000262367|CREBBP	ENSG00000005339|ENST00000262367|CREBBP	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.9239807128906	2	491.241055	980.467557	-0.80864	-0.00039724	-4.4862	-0.0022038	-5.2948	-0.002601	491.24066245547357	61.502	0.42581	61.502	61.2	61.626	0					12	9	2	0	0	0	0.028476	1	5410	5410		40.573	0	1	186780			5988	851	4781	4790	7131	7131					-0.023457617730969105
EAQQQYFNS	9	Unmodified	_EAQQQYFNS_					0	0	0			REV__ENST00000605039.5_1_12:51696457-51717886:-|nuORF	REV__ENST00000605039.5_1_12:51696457-51717886:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.3065185546875	2	557.743628	1113.4727	0.46335	0.00025843	-0.90832	-0.00050661	-0.44497	-0.00024818	557.743116543953	45.145	0.39542	45.145	44.977	45.373	0					17	8	3	0	0	0	0.027411	1	3094	3094		53.089	0.15226	1	154010	+		5989	18010	4782	4791	7132	7132					-0.07949502701148958
EAQRKVLV	8	Unmodified	_EAQRKVLV_					0	0	0			REV__ENST00000514858.5_1_4:2172840-2209821:-|nuORF	REV__ENST00000514858.5_1_4:2172840-2209821:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	471.78997802734375	2	471.790184	941.565815	-1.2214	-0.00057625	1.3011	0.00061386	0.079718	3.761E-05	471.79063808912963	50.403	1.2893	47.608	47.232	48.521	-2.794					55	25	3	0	0	0	0.65582	1	3252	3252		52.299	9.903	1	157410	+		5990	18987	4783	4792	7133	7133					0.09269466542764349
EAQSRIVAI	9	Unmodified	_EAQSRIVAI_					0	0	0		tr|A0A553SP30|A0A553SP30_NIACIFlagellarmotorswitchproteinFliGOS=NialliacirculansOX=1397GN=fliGPE=3SV=1	tr|A0A553SP30|A0A553SP30_NIACIFlagellarmotorswitchproteinFliGOS=NialliacirculansOX=1397GN=fliGPE=3SV=1	tr|A0A553SP30|A0A553SP30_NIACIFlagellarmotorswitchproteinFliGOS=NialliacirculansOX=1397GN=fliGPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	493.7872314453125	2	493.785099	985.555644	-0.2692	-0.00013293	3.7452	0.0018493	3.476	0.0017164	493.7867393201552	121.47	1.3357	121.27	120.95	122.29	-0.19718					61	26	3	0	0	0	0.27001	1	11741	11741		66.429	5.4573	1	176810			5991	33996	4784	4793	7134	7134					0.06228858817530636
EAQSRIVAI	9	Unmodified	_EAQSRIVAI_					0	0	0		tr|A0A553SP30|A0A553SP30_NIACIFlagellarmotorswitchproteinFliGOS=NialliacirculansOX=1397GN=fliGPE=3SV=1	tr|A0A553SP30|A0A553SP30_NIACIFlagellarmotorswitchproteinFliGOS=NialliacirculansOX=1397GN=fliGPE=3SV=1	tr|A0A553SP30|A0A553SP30_NIACIFlagellarmotorswitchproteinFliGOS=NialliacirculansOX=1397GN=fliGPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	493.78643798828125	2	493.785099	985.555644	1.1397	0.00056278	2.6761	0.0013214	3.8158	0.0018842	493.786264516808	122.62	1.6631	121.59	121.32	122.98	-1.0286					75	31	3	0	0	0	0.37135	1	9428	9428		54.776	3.4409	1	255040			5992	33996	4784	4793	7135	7135					0.06228858817530636
EAQSRIVAI	9	Unmodified	_EAQSRIVAI_					0	0	0		tr|A0A553SP30|A0A553SP30_NIACIFlagellarmotorswitchproteinFliGOS=NialliacirculansOX=1397GN=fliGPE=3SV=1	tr|A0A553SP30|A0A553SP30_NIACIFlagellarmotorswitchproteinFliGOS=NialliacirculansOX=1397GN=fliGPE=3SV=1	tr|A0A553SP30|A0A553SP30_NIACIFlagellarmotorswitchproteinFliGOS=NialliacirculansOX=1397GN=fliGPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.7859802246094	2	493.785099	985.555644	0.40814	0.00020153	3.2843	0.0016217	3.6924	0.0018233	493.786533625888	123	1.5868	121.63	121.36	122.94	-1.3666					76	31	4	0	0	0	0.27001	1	11648	11648		66.429	0.6261	1	252900			5993	33996	4784	4793	7136	7136					0.06228858817530636
EAQTLATADL	10	Unmodified	_EAQTLATADL_					0	0	0		nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2;SLC4A2|p.F726Lfs*12|1|0.27|ENSG00000164889|chr7:151071590-151071590|T/-|frameshift_variant	nc|ENSG00000164889|P04920-2|SLC4A2	nc|ENSG00000164889|P04920-2|SLC4A2	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.2437744140625	2	516.764029	1031.5135	-0.67962	-0.00035121	1.0391	0.00053696	0.35946	0.00018576	516.7641301020211	48.06	0.43816	48.06	47.854	48.292	0					18	9	3	0	0	0	0.026994	1	3484	3484		19.104	0	1	300760			5994	6495	4785	4794	7137	7137					-0.0009916138153585052
EARACKFAF	9	Unmodified	_EARACKFAF_					0	0	0			REV__ENSG00000166225|ENST00000549921|FRS2	REV__ENSG00000166225|ENST00000549921|FRS2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.2904052734375	2	521.760569	1041.50659	-0.16514	-8.6161E-05	1.7069	0.00089061	1.5418	0.00080445	521.7613964382147	61.249	1.4473	57.819	57.395	58.842	-3.43					66	29	3	0	0	0	0.027462	1	4149	4149		30.504	0	1	1220200	+		5995	21169	4786	4795	7138	7138					-0.012507527430898335
EARANITVH	9	Unmodified	_EARANITVH_					0	0	0			REV__ENST00000458579.5_1_7:44091436-44097592:+|nuORF	REV__ENST00000458579.5_1_7:44091436-44097592:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	505.7723083496094	2	505.772522	1009.53049	-0.30414	-0.00015383	0.052863	2.6737E-05	-0.25128	-0.00012709	505.77243714098097	33.414	0.39622	33.414	33.236	33.632	0					21	7	4	0	0	0	0.33652	1	1534	1534		58.782	0.97068	1	530240	+		5996	19375	4787	4796	7139	7139					0.02610804014943824
EARCHYRN	8	Unmodified	_EARCHYRN_					0	0	0		ENST00000379549.6_1_4:139993096-139994633:-|nuORF	ENST00000379549.6_1_4:139993096-139994633:-|nuORF	ENST00000379549.6_1_4:139993096-139994633:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.3045654296875	2	524.740699	1047.46685	-0.79503	-0.00041719	-0.012409	-6.5117E-06	-0.80744	-0.0004237	524.740485286386	74.462	1.6448	71.231	71	72.645	-3.2308					76	33	3	0	0	0	0.028476	1	5883	5883		63.306	8.53	1	468790			5997	11127	4788	4797	7140	7140					-0.05498879693800518
EARCHYRN	8	Unmodified	_EARCHYRN_					0	0	0		ENST00000379549.6_1_4:139993096-139994633:-|nuORF	ENST00000379549.6_1_4:139993096-139994633:-|nuORF	ENST00000379549.6_1_4:139993096-139994633:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	524.740699	1047.46685	-0.19236	-0.00010094	-0.69217	-0.00036321	-0.88453	-0.00046415	524.7401410856667	73.48	1.5178	71.08	70.534	72.052	-2.3999	-0.075546	-0.00032089	NaN	63.306	56	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107170			5998	11127	4788	4797							-0.05498879693800518
EARGILGLK	9	Unmodified	_EARGILGLK_					0	0	0		ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	ENSG00000094804|ENST00000209728|CDC6	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.2604675292969	2	478.798009	955.581465	0.26953	0.00012905	-0.96501	-0.00046204	-0.69547	-0.00033299	478.79752499944806	52.75	0.60903	52.75	52.434	53.043	0					20	13	2	0	0	0	0.027447	1	4146	4146		39.253	5.0803	1	218400			5999	1913	4789	4798	7141	7141					0.10189753059796658
EARGLKPGAP	10	Unmodified	_EARGLKPGAP_					0	0	0			REV__ENST00000301488.7_1_11:67275745-67276087:-|nuORF	REV__ENST00000301488.7_1_11:67275745-67276087:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.81298828125	2	498.285266	994.555979	-0.094823	-4.7249E-05	-4.1852	-0.0020854	-4.28	-0.0021326	498.28322623225955	108.12	0.72061	106.92	106.69	107.41	-1.1978					19	13	2	0	0	0	0.026665	1	7680	7680		26.693	0	1	14941	+		6000	24250	4790	4799	7142	7142					0.05848278537371243
EARIVSAPI	9	Unmodified	_EARIVSAPI_					0	0	0		tr|A0A7D6VSX9|A0A7D6VSX9_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10970PE=3SV=1	tr|A0A7D6VSX9|A0A7D6VSX9_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10970PE=3SV=1	tr|A0A7D6VSX9|A0A7D6VSX9_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10970PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	477.82196044921875	2	478.282192	954.549831	0.08624	4.1247E-05	-0.41857	-0.0002002	-0.33233	-0.00015895	478.2818599614857	81.355	1.375	79.032	78.182	79.557	-2.3226					57	26	3	0	0	0	0.027462	1	4574	4574		54.776	24.459	1	833750			6001	35066	4791	4800	7143	7143					0.07073760305831911
EARKLEATI	9	Unmodified	_EARKLEATI_					0	0	0		ENSG00000176978|ENST00000371579|DPP7;ENST00000483783.1_1_9:140005102-140007040:-|nuORF	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.2855834960938	2	515.798206	1029.58186	-0.22295	-0.000115	-0.70921	-0.00036581	-0.93216	-0.00048081	515.7979000547081	83.48	1.2546	80.817	80.339	81.594	-2.6629					37	25	2	0	0	0	0.027453	1	6932	6932		37.812	12.237	1	177340			6002	7646	4792	4801	7144	7144					0.06825127988986424
EARKPSEPL	9	Unmodified	_EARKPSEPL_					0	0	0			REV__nc|ENSG00000108312|P17480-2|UBTF	REV__nc|ENSG00000108312|P17480-2|UBTF	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.7841186523438	2	513.782556	1025.55056	0.16375	8.4133E-05	2.8862	0.0014829	3.0499	0.001567	513.783908054894	112.88	1.1269	111.43	111.16	112.29	-1.4461					41	22	2	0	0	0	0.28934	1	10445	10445		64.207	5.4253	1	153970	+		6003	17879	4793	4802	7145	7145					0.03880554954912441
EARKVVGAL	9	Unmodified	_EARKVVGAL_					0	0	0		nc|ENSG00000115705|P07202-7|TPO;nc|ENSG00000115705|P07202-3|TPO;nc|ENSG00000115705|P07202-6|TPO;nc|ENSG00000115705|P07202-8|TPO;nc|ENSG00000115705|P07202-2|TPO;nc|ENSG00000115705|P07202-4|TPO;ENSG00000115705|ENST00000329066|TPO	nc|ENSG00000115705|P07202-7|TPO	nc|ENSG00000115705|P07202-7|TPO	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.25732421875	2	471.790184	941.565815	-0.03278	-1.5465E-05	0.014621	6.898E-06	-0.018159	-8.5671E-06	471.79000067568444	47.219	0.43712	47.219	46.985	47.422	0					25	9	3	0	0	0	0.027462	1	3385	3385		30.318	2.2362	1	871380			6004	14977	4794	4803	7146	7146					0.0926946654275298
EARPSPGLPV	10	Unmodified	_EARPSPGLPV_					0	0	0		ENSG00000134438|ENST00000334889|RAX	ENSG00000134438|ENST00000334889|RAX	ENSG00000134438|ENST00000334889|RAX	MULTI-SECPEP	OvCa9_classI_Rep3	3	512.2543334960938	2	511.785099	1021.55564	-1.0024	-0.00051299	1.1738	0.00060074	0.17145	8.7744E-05	511.7854858992274	86.337	1.9302	84.116	83.835	85.765	-2.2204					66	37	4	0	0	0	0.026577	1	5222	5222		58.23	12.258	1	390090			6005	4296	4795	4804	7147	7147					0.045728588175165896
EARPSPGLPV	10	Unmodified	_EARPSPGLPV_					0	0	0		ENSG00000134438|ENST00000334889|RAX	ENSG00000134438|ENST00000334889|RAX	ENSG00000134438|ENST00000334889|RAX	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	511.785099	1021.55564	2.1186	0.0010843	4.3324	0.0022172	6.451	0.0033015	511.7871361333269	83.986	0.42099	83.986	83.714	84.135	0	-0.064918	0.0014897	NaN	58.23	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1140800			6006	4296	4795	4804							0.045728588175165896
EARQLLRVL	9	Unmodified	_EARQLLRVL_					0	0	0		ENST00000515051.1_1_5:175956111-175956726:-|nuORF;nc|ENSG00000146083|Q7L0R7-2|RNF44;ENSG00000146083|ENST00000274811|RNF44	ENST00000515051.1_1_5:175956111-175956726:-|nuORF	ENST00000515051.1_1_5:175956111-175956726:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.2935791015625	2	549.343115	1096.67168	-0.67054	-0.00036836	1.036	0.00056911	0.36545	0.00020076	549.3434433547244	59.101	0.52132	59.101	58.892	59.414	0					18	13	2	0	0	0	0.027462	1	5092	5092		19.997	0	1	1121900			6007	5264	4796	4805	7148	7148					0.12720802388230368
EARVGAGF	8	Unmodified	_EARVGAGF_					0	0	0		ENSG00000137310|ENST00000376257|TCF19	ENSG00000137310|ENST00000376257|TCF19	ENSG00000137310|ENST00000376257|TCF19	MULTI-SECPEP	OvCa99_classI_Rep5	1	403.6784973144531	2	403.711402	805.408252	1.2446	0.00050245	1.8622	0.00075179	3.1068	0.0012542	403.71083268538945	58.548	0.37131	58.548	58.363	58.734	0					13	8	2	0	0	0	0.028476	1	4961	4961		40.573	0	1	117160			6008	4576	4797	4806	7149	7149					-0.002236129966149747
EARYTDIIL	9	Unmodified	_EARYTDIIL_					0	0	0		ENST00000508139.1_1_5:176518793-176520368:+|nuORF;ENSG00000160867|ENST00000292408|FGFR4	ENST00000508139.1_1_5:176518793-176520368:+|nuORF	ENST00000508139.1_1_5:176518793-176520368:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	547.74609375	2	547.298039	1092.58152	-0.057836	-3.1654E-05	1.5036	0.00082294	1.4458	0.00079128	547.2989027375286	106.08	0.57441	104.73	104.46	105.03	-1.3482					20	10	3	0	0	0	0.027455	1	7488	7488		42.396	3.59	1	32317			6009	6098	4798	4807	7150	7150					0.0389370826915183
EASDGIMVAR	10	Unmodified	_EASDGIMVAR_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;ENSG00000067225|ENST00000335181|PKM;nc|ENSG00000067225|P14618-2|PKM	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.2844848632812	2	524.758223	1047.50189	0.045864	2.4067E-05	0.11399	5.9818E-05	0.15986	8.3886E-05	524.7581169697388	114.49	0.49322	114.37	114.11	114.6	-0.11777					12	9	2	0	0	0	0.026688	1	10860	10860		19.104	0	1	18182			6010	1372	4799	4808	7151	7151					-0.01995681676521599
EASEKWPNL	9	Unmodified	_EASEKWPNL_					0	0	0		nc|ENSG00000142910|Q9GZM7-3|TINAGL1;ENSG00000142910|ENST00000271064|TINAGL1;nc|ENSG00000142910|Q9GZM7-2|TINAGL1;ENST00000481165.5_1_1:32050098-32051133:+|nuORF	nc|ENSG00000142910|Q9GZM7-3|TINAGL1	nc|ENSG00000142910|Q9GZM7-3|TINAGL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2839965820312	2	537.266739	1072.51892	-0.81645	-0.00043865	-3.1405	-0.0016873	-3.9569	-0.0021259	537.2651295621929	50.056	0.69594	50.056	49.813	50.509	0					26	15	3	0	0	0	0.027462	1	3838	3838		10.265	0	1	456000			6011	5000	4800	4809	7152	7152					-0.014434377990482972
EASHLRIL	8	Unmodified	_EASHLRIL_					0	0	0			REV__nc|ENSG00000156931|Q8N3P4-2|VPS8	REV__nc|ENSG00000156931|Q8N3P4-2|VPS8	MULTI-SECPEP	OvCa9_classI_Rep2	2	469.74957275390625	2	469.774534	937.534515	-1.3243	-0.00062213	0.83502	0.00039227	-0.4893	-0.00022986	469.7749236139667	68.151	0.63942	65.49	65.189	65.828	-2.661					21	12	2	0	0	0	0.028476	1	5388	5388		32.812	0	1	23252	+		6012	20505	4801	4810	7153	7153					0.06324893508644891
EASHPDIKP	9	Unmodified	_EASHPDIKP_					0	0	0			REV__CACNA1G|p.L1529Qfs*112|1|0.06|ENSG00000006283|chr17:50607900-50607901|TG/-|frameshift_variant	REV__CACNA1G|p.L1529Qfs*112|1|0.06|ENSG00000006283|chr17:50607900-50607901|TG/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.2674560546875	2	497.253631	992.49271	2.0306	0.0010097	-1.9202	-0.00095483	0.11042	5.4907E-05	497.2533255008969	85.015	0.83106	85.015	84.631	85.462	0					37	19	3	0	0	0	0.027462	1	8923	8923		31.53	17.754	1	325730	+		6013	15728	4802	4811	7154	7154					-0.003837069705355134
EASKKPWQ	8	Unmodified	_EASKKPWQ_					0	0	0			REV__ENST00000446498.1_1_1:26781156-26781564:-|nuORF	REV__ENST00000446498.1_1_1:26781156-26781564:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	487.2572326660156	2	487.258717	972.50288	-1.1162	-0.00054388	-4.0259	-0.0019616	-5.1421	-0.0025055	487.2565954392376	36.763	0.4935	36.763	36.575	37.069	0					22	10	3	0	0	0	0.58851	1	1967	1967		66.429	9.7082	1	357900	+		6014	25904	4803	4812	7155	7155					0.015529007547115725
EASKLAPKI	9	Unmodified	_EASKLAPKI_					0	0	0			REV__ENSG00000135976|ENST00000420699|ANKRD36	REV__ENSG00000135976|ENST00000420699|ANKRD36	MULTI-MSMS	OvCa9_classI_Rep3	3	478.79339599609375	2	478.792392	955.570232	-0.51114	-0.00024473	-0.47899	-0.00022934	-0.99013	-0.00047407	478.79207532118255	82.802	1.8434	80.505	80.235	82.079	-2.2963					87	38	5	0	0	0	0.33652	1	4704	4704		58.782	2.0609	1	1894200	+		6015	19345	4804	4813	7156	7156					0.09066930965661868
EASLDKDMW	9	Unmodified	_EASLDKDMW_					0	0	0			REV__tr|A0A553SRD2|A0A553SRD2_NIACIbeta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_00865PE=3SV=1	REV__tr|A0A553SRD2|A0A553SRD2_NIACIbeta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_00865PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	547.74609375	2	547.744782	1093.47501	-0.04859	-2.6615E-05	3.1054	0.001701	3.0568	0.0016743	547.7462969258835	106.35	2.0343	105.08	104.75	106.78	-1.267					82	39	5	0	0	0	0.14998	1	7488	7488		84.916	2.675	1	682200	+		6016	30722	4805	4814	7157	7157					-0.06798790287689371
EASLDKDMW	9	Unmodified	_EASLDKDMW_					0	0	0			REV__tr|A0A553SRD2|A0A553SRD2_NIACIbeta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_00865PE=3SV=1	REV__tr|A0A553SRD2|A0A553SRD2_NIACIbeta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_00865PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.7463989257812	2	547.744782	1093.47501	-1.6033	-0.00087821	4.398	0.002409	2.7946	0.0015308	547.7470542660203	106.92	1.9159	105.04	104.7	106.61	-1.8785					83	37	5	0	0	0	0.074342	2	9753	9741;9753		104.75	14.377	1	679780	+		6017	30722	4805	4814	7158;7159	7159					-0.06798790287689371
EASLGSQEAGI	11	Unmodified	_EASLGSQEAGI_					0	0	0		ENST00000564747.1_1_16:27472673-27473321:-|nuORF	ENST00000564747.1_1_16:27472673-27473321:-|nuORF	ENST00000564747.1_1_16:27472673-27473321:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	531.2601928710938	2	531.259111	1060.50367	3.0281	0.0016087	-3.1672	-0.0016826	-0.13907	-7.3884E-05	531.257130044634	102.55	0.85322	102.55	102.04	102.89	0					36	19	3	0	0	0	0.36705	1	11434	11434		63.534	3.4156	1	897610			6018	13813	4806	4815	7160	7160					-0.024163493868854857
EASLVGHNI	9	Unmodified	_EASLVGHNI_					0	0	0			REV__ENSG00000261609|ENST00000648994|GAN	REV__ENSG00000261609|ENST00000648994|GAN	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.2198486328125	2	470.248349	938.482145	-0.78896	-0.00037101	0.60876	0.00028627	-0.1802	-8.4739E-05	470.2486533197398	34.888	0.51895	34.888	34.679	35.198	0					19	10	3	0	0	0	0.027447	1	1741	1741		24.519	8.8774	1	115230	+		6019	23569	4807	4816	7161	7161					0.010443103750390037
EASMVRTTPLI	11	Unmodified	_EASMVRTTPLI_					0	0	0			REV__nc|ENSG00000138722|Q13201-2|MMRN1	REV__nc|ENSG00000138722|Q13201-2|MMRN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.23187255859375	3	406.556796	1216.64856	0.29973	0.00012186	1.24	0.00050415	1.5398	0.000626	406.5571794436335	65.932	0.78687	65.932	65.665	66.452	0					48	19	4	0	0	0	0.025759	1	6139	6139		10.562	0	1	886230	+		6020	19563	4808	4817	7162	7162					0.048899954885882835
EASPGQGPAAQ	11	Unmodified	_EASPGQGPAAQ_					0	0	0			REV__ENSG00000136383|ENST00000258888|ALPK3	REV__ENSG00000136383|ENST00000258888|ALPK3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3087463378906	2	506.738345	1011.46214	-0.117	-5.929E-05	2.5508	0.0012926	2.4337	0.0012333	506.740513378325	47.955	0.60539	44.847	44.433	45.039	-3.1077					13	11	2	0	0	0	0.02538	1	2626	2626		37.812	16.126	1	10811	+		6021	19384	4809	4818	7163	7163					-0.0431348535557845
EASRQPCGQQL	11	Unmodified	_EASRQPCGQQL_					0	0	0		ENSG00000138771|ENST00000296043|SHROOM3;ENST00000486758.5_1_4:77631429-77663226:+|nuORF	ENSG00000138771|ENST00000296043|SHROOM3	ENSG00000138771|ENST00000296043|SHROOM3	MULTI-MSMS	OvCa9_classI_Rep4_	4	608.7896728515625	2	608.790586	1215.56662	3.1879	0.0019407	-3.6496	-0.0022218	-0.46171	-0.00028108	608.7882379597531	135.57	1.5724	134.02	133.61	135.18	-1.5436					82	31	4	0	0	0	0.48812	1	13115	13115		54.722	10.345	1	243270			6022	4728	4810	4819	7164	7164					-0.032541068704858844
EASSAEHDL	9	Unmodified	_EASSAEHDL_					0	0	0			REV__ENST00000432103.6_1_14:60063465-60194426:-|nuORF	REV__ENST00000432103.6_1_14:60063465-60194426:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2574462890625	2	479.709254	957.403954	0.07055	3.3843E-05	1.0588	0.00050791	1.1293	0.00054175	479.70968619238704	60.794	0.67926	60.794	60.434	61.113	0					25	15	2	0	0	0	0.027448	1	5368	5368		35.618	8.9254	1	382880	+		6023	19645	4811	4820	7165	7165					-0.0764516700086233
EASSMYYGGK	10	Unmodified	_EASSMYYGGK_					0	0	0		ENSG00000206069|ENST00000640159|LHFPL7	ENSG00000206069|ENST00000640159|LHFPL7	ENSG00000206069|ENST00000640159|LHFPL7	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.8372192382812	2	546.736957	1091.45936	-0.50848	-0.000278	-2.8619	-0.0015647	-3.3703	-0.0018427	546.7355378133874	55.881	0.28845	55.881	55.723	56.011	0					10	6	2	0	0	0	0.026653	1	4607	4607		33.922	3.418	1	109690			6024	9093	4812	4821	7166	7166					-0.082710768047491
EASSWPLSI	9	Unmodified	_EASSWPLSI_					0	0	0		ENST00000328345.7_2_6:99284709-99285063:+|nuORF	ENST00000328345.7_2_6:99284709-99285063:+|nuORF	ENST00000328345.7_2_6:99284709-99285063:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	495.2969970703125	2	495.250557	988.486562	1.9677	0.00097451	-2.7503	-0.0013621	-0.78263	-0.0003876	495.24864060924614	88.762	0.93517	87.395	86.69	87.625	-1.3676					22	18	2	0	0	0	0.027343	1	7737	7737		79.451	10.966	1	19044			6025	10422	4813	4822	7167	7167					-0.00814225202043417
EASTNWDPL	9	Unmodified	_EASTNWDPL_					0	0	0			REV__tr|A0A553SMT2|A0A553SMT2_NIACISerineproteaseOS=NialliacirculansOX=1397GN=CEQ21_23035PE=4SV=1	REV__tr|A0A553SMT2|A0A553SMT2_NIACISerineproteaseOS=NialliacirculansOX=1397GN=CEQ21_23035PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.7640991210938	2	516.735271	1031.45599	-0.39845	-0.00020589	-2.1229	-0.001097	-2.5214	-0.0013029	516.7340142245788	56.547	0.36233	56.547	56.34	56.702	0					11	8	2	0	0	0	0.027462	1	4704	4704		32.812	3.6629	1	109720	+		6026	30367	4814	4823	7168	7168					-0.05848003587107087
EASVLLLTLA	10	Unmodified	_EASVLLLTLA_					0	0	0		ENST00000487787.5_1_1:202275897-202288332:+|nuORF;nc|ENSG00000133067|Q9HBX8-1|LGR6;chr1:202235993-202297508|365|13.83|0.48|4.85|+|ENST00000439764|LGR6,LGR6;nc|ENSG00000133067|Q9HBX8-2|LGR6;ENSG00000133067|ENST00000367278|LGR6	ENST00000487787.5_1_1:202275897-202288332:+|nuORF	ENST00000487787.5_1_1:202275897-202288332:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.2792358398438	2	515.313158	1028.61176	-0.66266	-0.00034148	0.35441	0.00018263	-0.30825	-0.00015885	515.3128793169443	104.25	1.1001	102.13	101.8	102.9	-2.1192					47	20	3	0	0	0	0.026802	1	9514	9514		34.173	0	1	114550			6027	12655	4815	4824	7169	7169					0.09860066934356837
EATEEKNK	8	Unmodified	_EATEEKNK_					0	0	0			REV__ENST00000393214.2_1_X:73595962-73596157:-|nuORF	REV__ENST00000393214.2_1_X:73595962-73596157:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	474.7347717285156	2	474.735271	947.45599	1.3656	0.0006483	-1.2033	-0.00057125	0.1623	7.7048E-05	474.73457679926594	119.44	0.4128	119.44	119.24	119.65	0					15	10	2	0	0	0	0.65062	1	13708	13708		53.351	7.3995	1	93961	+		6028	25276	4816	4825	7170	7170					-0.01984003587085681
EATEEKNK	8	Unmodified	_EATEEKNK_					0	0	0			REV__ENST00000393214.2_1_X:73595962-73596157:-|nuORF	REV__ENST00000393214.2_1_X:73595962-73596157:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	474.735271	947.45599	1.3656	0.0006483	-1.2033	-0.00057125	0.1623	7.7048E-05	474.73457679926594	119.44	0.4128	119.44	119.24	119.65	0	0	0	NaN	53.351	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93961	+		6029	25276	4816	4825							-0.01984003587085681
EATELLPMI	9	Unmodified	_EATELLPMI_					0	0	0		ENST00000577161.5_1_17:78519375-78883449:+|nuORF;nc|ENSG00000141564|Q8N122-3|RPTOR;ENSG00000141564|ENST00000306801|RPTOR;nc|ENSG00000141564|Q8N122-2|RPTOR;ENST00000574767.5_1_17:78681670-78831736:+|nuORF	ENST00000577161.5_1_17:78519375-78883449:+|nuORF	ENST00000577161.5_1_17:78519375-78883449:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.3117370605469	2	508.770268	1015.52598	0.86387	0.00043951	3.0047	0.0015287	3.8685	0.0019682	508.771759196048	129.13	0.88905	127.67	127.5	128.39	-1.4565					22	17	2	0	0	0	0.027462	1	12391	12391		40.573	3.4135	1	20101			6030	4928	4817	4826	7171	7171					0.018841587571614582
EATELLPMI	9	Unmodified	_EATELLPMI_					0	0	0		ENST00000577161.5_1_17:78519375-78883449:+|nuORF;nc|ENSG00000141564|Q8N122-3|RPTOR;ENSG00000141564|ENST00000306801|RPTOR;nc|ENSG00000141564|Q8N122-2|RPTOR;ENST00000574767.5_1_17:78681670-78831736:+|nuORF	ENST00000577161.5_1_17:78519375-78883449:+|nuORF	ENST00000577161.5_1_17:78519375-78883449:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	508.770268	1015.52598	0.90504	0.00046046	2.6084	0.0013271	3.5135	0.0017875	508.7717055458329	128.04	0.5908	127.81	127.64	128.23	-0.22697	0.013866	-0.00013409	NaN	40.573	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21140			6031	4928	4817	4826							0.018841587571614582
EATIGRKLN	9	Unmodified	_EATIGRKLN_					0	0	0			REV__ENST00000591360.1_1_18:56203896-56204202:+|nuORF	REV__ENST00000591360.1_1_18:56203896-56204202:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2899475097656	2	501.290548	1000.56654	-1.4695	-0.00073667	1.3149	0.00065914	-0.15466	-7.7529E-05	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.67509	1	11259	11259		23.042	1.0826	1	97838	+		6032	27931	4818	4827	7172	7172					0.06628261191804086
EATLSEARLK	10	Unmodified	_EATLSEARLK_					0	0	0		nc|ENSG00000153815|Q8IY22-3|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.75732421875	2	559.31422	1116.61389	0.21748	0.00012164	4.374	0.0024464	4.5914	0.0025681	559.3172275391188	40.89	0.62785	40.89	40.386	41.014	0					15	13	2	0	0	0	0.026826	1	2462	2462		22.58	0	1	88632			6033	5695	4819	4828	7173	7173					0.06024495672136254
EATPMLKTL	9	Unmodified	_EATPMLKTL_					0	0	0		ENSG00000197872|ENST00000381323|CYRIA;ENST00000469507.1_1_2:16742256-16742729:-|nuORF;nc|ENSG00000153310|Q9NUQ9-2|CYRIB;ENST00000517801.5_1_8:130863079-130874553:-|nuORF;ENST00000523288.5_1_8:130864395-130891707:-|nuORF;FAM49B|p.L263Yfs*20|1|0.05|ENSG00000153310|chr8:129849297-129849298|-/AA|frameshift_variant;FAM49B|p.I262Sfs*29|1|0.05|ENSG00000153310|chr8:129849299-129849300|-/GGCCTTTGGCCAAAGGAATTAAAGGA|frameshift_variant;ENSG00000153310|ENST00000694912|CYRIB	ENSG00000197872|ENST00000381323|CYRIA;ENST00000517801.5_1_8:130863079-130874553:-|nuORF	ENSG00000197872|ENST00000381323|CYRIA	MULTI-MSMS	OvCa99_classI_Rep5	1	502.2771911621094	2	502.27826	1002.54197	0.61021	0.0003065	-1.5871	-0.00079718	-0.9769	-0.00049068	502.2773771732016	141.42	1.0552	141.42	141.03	142.09	0					36	20	3	0	0	0	0.27001	1	16518	16518		66.429	7.6473	1	156960			6034	8755;5677	4820	4829	7174	7174					0.040798649940711584
EATVAPDKEP	10	Unmodified	_EATVAPDKEP_					0	0	0			REV__ENSG00000130758|ENST00000253055|MAP3K10	REV__ENSG00000130758|ENST00000253055|MAP3K10	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.8310546875	2	528.764029	1055.5135	-0.55139	-0.00029156	-0.59961	-0.00031705	-1.151	-0.00060861	528.7639823099095	55.559	0.40567	55.559	55.358	55.764	0					13	9	2	0	0	0	0.026577	1	4576	4576		58.23	0	1	176240	+		6035	18968	4821	4830	7175	7175					-0.012031613815224773
EATVYVDKL	9	Unmodified	_EATVYVDKL_					0	0	0			REV__tr|A0A7D6ZRU1|A0A7D6ZRU1_9CLOTCBSdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05065PE=4SV=1	REV__tr|A0A7D6ZRU1|A0A7D6ZRU1_9CLOTCBSdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05065PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.2931518554688	2	519.279315	1036.54408	0.36991	0.00019209	0.0033638	1.7467E-06	0.37328	0.00019383	519.279094118289	109.05	1.1384	108.83	108.52	109.66	-0.22498					48	22	4	0	0	0	0.027418	1	10295	10295		58.782	7.4465	1	111380	+		6036	32166	4822	4831	7176	7176					0.027266170035318282
EATVYVDKL	9	Unmodified	_EATVYVDKL_					0	0	0			REV__tr|A0A7D6ZRU1|A0A7D6ZRU1_9CLOTCBSdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05065PE=4SV=1	REV__tr|A0A7D6ZRU1|A0A7D6ZRU1_9CLOTCBSdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05065PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	519.279315	1036.54408	1.4243	0.00073962	0.8161	0.00042379	2.2404	0.0011634	519.2795889342319	108.74	0.47806	108.74	108.54	109.02	0	-0.033115	0.00088581	NaN	58.782	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271590	+		6037	32166	4822	4831							0.027266170035318282
EATWAYCSPS	10	Unmodified	_EATWAYCSPS_					0	0	0			REV__chrX:101838410-101838790|137|19.47|0.81|4.59|-|1|NXF5,NXF5|1	REV__chrX:101838410-101838790|137|19.47|0.81|4.59|-|1|NXF5,NXF5|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.2701416015625	2	557.729132	1113.44371	1.535	0.00085611	3.5077	0.0019563	5.0426	0.0028124	557.7308844794923	145.64	0.43768	145.64	145.39	145.83	0					12	7	2	0	0	0	0.026802	1	17054	17054		42.396	14.514	1	27582	+		6038	16128	4823	4832	7177	7177					-0.10847363321772718
EAVAPHEVL	9	Unmodified	_EAVAPHEVL_					0	0	0			REV__ENSG00000166743|ENST00000520010|ACSM1	REV__ENSG00000166743|ENST00000520010|ACSM1	MULTI-SECPEP	OvCa9_classI_Rep2	2	483.2919921875	2	482.758549	963.502546	-0.38966	-0.00018811	0.25251	0.0001219	-0.13714	-6.6208E-05	482.7585914409841	93.741	1.1797	92.641	92.329	93.509	-1.0995					45	22	3	0	0	0	0.027448	1	8393	8393		53.351	35.986	1	90520	+		6039	21216	4824	4833	7178	7178					0.01933481034848228
EAVATVIQRA	10	Unmodified	_EAVATVIQRA_					0	0	0		nc|ENSG00000090975|Q9BZ72-3|PITPNM2;nc|ENSG00000090975|Q9BZ72-2|PITPNM2;ENSG00000090975|ENST00000320201|PITPNM2	nc|ENSG00000090975|Q9BZ72-3|PITPNM2	nc|ENSG00000090975|Q9BZ72-3|PITPNM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7686157226562	2	529.303655	1056.59276	2.391	0.0012656	3.8732	0.0020501	6.2642	0.0033156	529.3053907970884	96.498	0.67052	96.498	96.21	96.881	0					32	15	4	0	0	0	0.026674	1	10578	10578		47.96	15.147	1	728790			6040	1855	4825	4834	7179	7179					0.0667253036326656
EAVETGIVI	9	Unmodified	_EAVETGIVI_					0	0	0			REV__tr|A0A553SRF0|A0A553SRF0_NIACIPTSbeta-glucosidetransportersubunitIIBCAOS=NialliacirculansOX=1397GN=CEQ21_00970PE=4SV=1	REV__tr|A0A553SRF0|A0A553SRF0_NIACIPTSbeta-glucosidetransportersubunitIIBCAOS=NialliacirculansOX=1397GN=CEQ21_00970PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.272216796875	2	465.760758	929.506963	-0.25848	-0.00012039	3.1654	0.0014743	2.9069	0.0013539	465.76086012602383	87.188	0.5007	84.561	84.349	84.85	-2.6269					16	9	3	0	0	0	0.027456	1	7424	7424		47.916	0	1	22961	+		6041	30726	4826	4835	7180	7180					0.039389454577644756
EAVEVEEVI	9	Unmodified	_EAVEVEEVI_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.3020324707031	2	508.760955	1015.50736	1.4587	0.00074214	-0.86558	-0.00044038	0.59314	0.00030177	508.76056111987833	90.459	0.8986	89.157	88.83	89.728	-1.302					21	17	2	0	0	0	0.027441	1	7992	7992		55.504	11.387	1	17046			6042	7686	4827	4836	7181	7181					0.0002232038694955918
EAVEYLLED	9	Unmodified	_EAVEYLLED_					0	0	0			REV__nc|ENSG00000051341|O75417-2|POLQ	REV__nc|ENSG00000051341|O75417-2|POLQ	MULTI-SECPEP	OvCa9_classI_Rep2	2	540.3300170898438	2	540.758412	1079.50227	-1.3307	-0.00071957	-0.46402	-0.00025093	-1.7947	-0.0009705	540.7564182585438	138.08	0.14793	137.86	137.73	137.88	-0.22696					4	2	2	0	0	0	0.027462	1	13744	13744		15.642	0	1	5759.9	+		6043	16687	4828	4837	7182	7182					-0.03429983475643894
EAVFFCNL	8	Unmodified	_EAVFFCNL_					0	0	0		nc|ENSG00000007264|P42679-3|MATK;ENSG00000007264|ENST00000310132|MATK;nc|ENSG00000007264|P42679-2|MATK	nc|ENSG00000007264|P42679-3|MATK	nc|ENSG00000007264|P42679-3|MATK	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.2774658203125	2	471.723121	941.431689	1.1015	0.00051961	-3.0963	-0.0014606	-1.9948	-0.00094101	471.72123979890046	83.355	0.34062	83.355	83.204	83.545	0					10	7	2	0	0	0	0.028476	1	8652	8652		42.474	1.9018	1	138330			6044	898	4829	4838	7183	7183					-0.041369352743117815
EAVFFCNL	8	Unmodified	_EAVFFCNL_					0	0	0		nc|ENSG00000007264|P42679-3|MATK;ENSG00000007264|ENST00000310132|MATK;nc|ENSG00000007264|P42679-2|MATK	nc|ENSG00000007264|P42679-3|MATK	nc|ENSG00000007264|P42679-3|MATK	MULTI-MATCH	OvCa9_classI_Rep2	2		2	471.723121	941.431689	-1.4884	-0.00070212	-1.7668	-0.00083346	-3.2553	-0.0015356	471.7220825104184	84.781	0.7532	83.234	82.745	83.499	-1.5462	0.068356	0.0008722	NaN	42.474	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15108			6045	898	4829	4838							-0.041369352743117815
EAVFFCNL	8	Unmodified	_EAVFFCNL_					0	0	0		nc|ENSG00000007264|P42679-3|MATK;ENSG00000007264|ENST00000310132|MATK;nc|ENSG00000007264|P42679-2|MATK	nc|ENSG00000007264|P42679-3|MATK	nc|ENSG00000007264|P42679-3|MATK	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	471.723121	941.431689	2.0897	0.00098576	-4.3732	-0.002063	-2.2835	-0.0010772	471.720902674329	85.554	0.83315	82.908	82.66	83.493	-2.6463	-0.25776	-0.0015868	NaN	42.474	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71546			6046	898	4829	4838							-0.041369352743117815
EAVGLDSIKL	10	Unmodified	_EAVGLDSIKL_					0	0	0			REV__ENST00000591133.2_1_19:1220240-1220516:+|nuORF	REV__ENST00000591133.2_1_19:1220240-1220516:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.8008422851562	2	522.800414	1043.58628	-0.60017	-0.00031377	0.86359	0.00045148	0.26342	0.00013772	522.8007514166023	102.85	1.7277	100.65	100.25	101.98	-2.1994					65	32	4	0	0	0	0.37436	1	9285	9285		71.877	0.49956	1	465810	+		6047	18377	4830	4839	7184	7184					0.06622592411895312
EAVGVKKTVK	10	Unmodified	_EAVGVKKTVK_					0	0	0		nc|ENSG00000186416|O15226|NKRF;nc|ENSG00000186416|O15226-2|NKRF;ENSG00000186416|ENST00000688521|NKRF	nc|ENSG00000186416|O15226|NKRF	nc|ENSG00000186416|O15226|NKRF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.3172607421875	2	529.832049	1057.64954	0.025014	1.3253E-05	-0.25462	-0.00013491	-0.22961	-0.00012165	529.8317923143164	32.328	0.74228	32.328	32.006	32.748	0					32	14	4	0	0	0	0.02663	1	1446	1446		28.081	0.19925	1	329280			6048	8334	4831	4840	7185	7185					0.12302577919808755
EAVIDKHSY	9	Unmodified	_EAVIDKHSY_					0	0	0			REV__ENST00000482806.5_1_7:150774217-150777853:-|nuORF	REV__ENST00000482806.5_1_7:150774217-150777853:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.3195190429688	2	531.266739	1060.51892	-0.42364	-0.00022507	-2.5861	-0.0013739	-3.0097	-0.001599	531.2648712832059	33.626	0.48975	33.626	33.335	33.824	0					25	9	5	0	0	0	0.027462	1	1564	1564		35.618	8.571	1	178530	+		6049	21033	4832	4841	7186	7186					-0.008914377990549838
EAVIHQIT	8	Unmodified	_EAVIHQIT_					0	0	0			REV__nc|ENSG00000107331|Q9BZC7|ABCA2	REV__nc|ENSG00000107331|Q9BZC7|ABCA2	MULTI-SECPEP	OvCa9_classI_Rep2	2	456.26910400390625	2	455.753267	909.491981	0.66761	0.00030426	-0.28329	-0.00012911	0.38431	0.00017515	455.75306442072974	76.607	1.9863	74.753	74.044	76.03	-1.854					53	37	2	0	0	0	0.028476	1	6288	6288		16.473	3.514	1	109050	+		6050	17843	4833	4842	7187	7187					0.03361498380422745
EAVIPPNLRL	10	Unmodified	_EAVIPPNLRL_					0	0	0		tr|A0A7D6ZVZ3|A0A7D6ZVZ3_9CLOTRodshape-determiningproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06075PE=4SV=1	tr|A0A7D6ZVZ3|A0A7D6ZVZ3_9CLOTRodshape-determiningproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06075PE=4SV=1	tr|A0A7D6ZVZ3|A0A7D6ZVZ3_9CLOTRodshape-determiningproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06075PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.767578125	2	561.337498	1120.66044	-0.10372	-5.8222E-05	-1.1836	-0.00066439	-1.2873	-0.00072261	561.3361948688462	65.465	0.36004	65.465	65.347	65.707	0					11	8	2	0	0	0	0.026931	1	6043	6043		23.523	2.5758	1	184120			6051	35821	4834	4843	7188	7188					0.10493980294063476
EAVISDRRSE	10	Unmodified	_EAVISDRRSE_					0	0	0			REV__ENST00000597026.5_1_19:19017767-19023834:-|nuORF	REV__ENST00000597026.5_1_19:19017767-19023834:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.3110961914062	2	581.296559	1160.57856	1.206	0.00070106	-2.3348	-0.0013572	-1.1288	-0.00065615	581.2949423364083	112.29	0.50296	112.29	112.06	112.57	0					13	10	2	0	0	0	0.027056	1	12754	12754		9.7057	0	1	132810	+		6052	17745	4835	4844	7189	7189					0.004698331443250936
EAVKLFESI	9	Unmodified	_EAVKLFESI_					0	0	0			REV__nc|ENSG00000073921|Q13492-4|PICALM	REV__nc|ENSG00000073921|Q13492-4|PICALM	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.2900390625	2	518.289682	1034.56481	-1.1781	-0.00061062	-1.3024	-0.00067501	-2.4805	-0.0012856	518.2889100758878	53.587	0.97174	50.379	50.149	51.12	-3.208					51	18	3	0	0	0	0.40667	1	3279	3279		51.335	0.14276	1	477110	+		6053	16943	4836	4845	7190	7190					0.04891207383184337
EAVKYLIK	8	Unmodified	_EAVKYLIK_					0	0	0		ENST00000371394.6_1_9:140611085-140686569:+|nuORF;nc|ENSG00000181090|Q9H9B1-3|EHMT1;ENSG00000181090|ENST00000460843|EHMT1	ENST00000371394.6_1_9:140611085-140686569:+|nuORF	ENST00000371394.6_1_9:140611085-140686569:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.75927734375	2	482.29731	962.580068	1.3942	0.0006724	0.32207	0.00015533	1.7162	0.00082774	482.2972895887081	93.406	0.62067	93.406	93.136	93.757	0					23	14	2	0	0	0	0.028476	1	10114	10114		38.806	0	1	1273500			6054	7919	4837	4846	7191	7191					0.09728118971042932
EAVNANIIN	9	Unmodified	_EAVNANIIN_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.78887939453125	2	479.253631	956.49271	-0.10808	-5.18E-05	3.3612	0.0016109	3.2531	0.0015591	479.2551680217457	79.31	0.99441	76.558	75.991	76.986	-2.7514					33	20	2	0	0	0	0.027455	1	6393	6393		51.335	0	1	44549			6055	15096	4838	4847	7192	7192					0.012722930294671642
EAVPPANQR	9	Unmodified	_EAVPPANQR_					0	0	0			REV__ENST00000395936.5_2_17:15162478-15165760:-|nuORF	REV__ENST00000395936.5_2_17:15162478-15165760:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.3191223144531	2	491.259248	980.503943	-0.29472	-0.00014478	0.78246	0.00038439	0.48774	0.00023961	491.2596210999921	46.481	0.36335	43.409	43.189	43.552	-3.0724					9	6	2	0	0	0	0.027462	1	2443	2443		23.042	0	1	8228	+		6056	24356	4839	4848	7193	7193					0.012911151236039586
EAVPVLALLL	10	Unmodified	_EAVPVLALLL_					0	0	0			REV__ENST00000409600.5_1_2:201676468-201676705:+|nuORF	REV__ENST00000409600.5_1_2:201676468-201676705:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.3330078125	2	519.333893	1036.65323	-1.4968	-0.00077735	-2.1047	-0.0010931	-3.6015	-0.0018704	519.3327101057663	72.19	1.1192	68.733	68.46	69.579	-3.4563					58	22	4	0	0	0	0.58282	2	5560	5548;5560		44.117	8.4985	1	1009300	+		6057	25473	4840	4849	7194;7195	7195					0.13637247693645804
EAVPWRAL	8	Unmodified	_EAVPWRAL_					0	0	0		ENST00000500487.2_1_15:21967899-21967986:-|nuORF	ENST00000500487.2_1_15:21967899-21967986:-|nuORF	ENST00000500487.2_1_15:21967899-21967986:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.2626953125	2	471.263802	940.513051	-0.18652	-8.7899E-05	-4.174	-0.001967	-4.3605	-0.0020549	471.2617127241108	53.488	1.4296	50.28	49.844	51.273	-3.208					56	27	3	0	0	0	0.64026	1	3269	3269		55.504	4.3115	1	235570			6058	12840	4841	4850	7196	7196					0.04041508479940603
EAVPWRAL	8	Unmodified	_EAVPWRAL_					0	0	0		ENST00000500487.2_1_15:21967899-21967986:-|nuORF	ENST00000500487.2_1_15:21967899-21967986:-|nuORF	ENST00000500487.2_1_15:21967899-21967986:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	471.263802	940.513051	-1.2257	-0.00057761	-2.9134	-0.001373	-4.1391	-0.0019506	471.2623835719497	53.318	0.69275	50.504	50.133	50.826	-2.8139	0.11184	0.00092942	NaN	55.504	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45668			6059	12840	4841	4850							0.04041508479940603
EAVQFVGTPL	10	Unmodified	_EAVQFVGTPL_					0	0	0			REV__ENSG00000136147|ENST00000378319|PHF11	REV__ENSG00000136147|ENST00000378319|PHF11	MULTI-MSMS	OvCa99_classI_Rep5	1	530.7874145507812	2	530.787307	1059.56006	1.9881	0.0010553	-0.84937	-0.00045083	1.1387	0.00060442	530.7867028605534	85.274	1.3483	85.274	84.963	86.311	0					70	32	5	0	0	0	0.40664	1	8963	8963		67.494	2.0283	1	7983400	+		6060	19361	4842	4851	7197	7197					0.032663232404502196
EAVQLEETK	9	Unmodified	_EAVQLEETK_					0	0	0		ENSG00000183638|ENST00000382483|RP1L1	ENSG00000183638|ENST00000382483|RP1L1	ENSG00000183638|ENST00000382483|RP1L1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.7918090820312	2	523.771854	1045.52915	1.7419	0.00091236	0.22694	0.00011887	1.9688	0.0010312	523.7720189319822	78.295	0.44488	78.295	78.053	78.498	0					16	9	2	0	0	0	0.027462	1	7962	7962		24.519	3.5723	1	309830			6061	8091	4843	4852	7198	7198					0.008211251355078275
EAVRAVPVL	9	Unmodified	_EAVRAVPVL_					0	0	0			REV__ENSG00000103485|ENST00000395384|QPRT	REV__ENSG00000103485|ENST00000395384|QPRT	MULTI-MSMS	OvCa99_classI_Rep5	1	477.2941589355469	2	477.292559	952.570566	0.64909	0.00030981	0.96349	0.00045986	1.6126	0.00076967	477.2931302146515	81.276	0.82082	81.276	80.993	81.814	0					68	19	5	0	0	0	0.46356	1	8387	8387		45.972	1.8554	1	5512700	+		6062	17619	4844	4853	7199	7199					0.09238350685518526
EAVRKSEPL	9	Unmodified	_EAVRKSEPL_					0	0	0		L1MB2_dup7467|chr17:28468443-28469112:+|3.2618297774377094|0.2062484153565556|3.98|429.0|23|3|sense	L1MB2_dup7467|chr17:28468443-28469112:+|3.2618297774377094|0.2062484153565556|3.98|429.0|23|3|sense	L1MB2_dup7467|chr17:28468443-28469112:+|3.2618297774377094|0.2062484153565556|3.98|429.0|23|3|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.7728881835938	2	514.790381	1027.56621	-0.93418	-0.00048091	-0.0068973	-3.5507E-06	-0.94108	-0.00048446	514.7902436651342	70.095	0.92558	66.614	66.057	66.983	-3.4812					28	18	2	0	0	0	0.027185	1	5318	5318		71.877	0	1	98664			6063	14591	4845	4854	7200	7200					0.05352841471949432
EAVTLPPNLH	10	Unmodified	_EAVTLPPNLH_					0	0	0		ENSG00000013288|ENST00000285599|MAN2B2;nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	ENSG00000013288|ENST00000285599|MAN2B2	ENSG00000013288|ENST00000285599|MAN2B2	MULTI-MSMS	OvCa99_classI_Rep5	1	545.7965087890625	2	545.798206	1089.58186	-1.0206	-0.00055704	-1.927	-0.0010518	-2.9476	-0.0016088	545.7970194259276	27.167	0.39745	27.167	27.043	27.44	0					15	7	3	0	0	0	0.59703	1	781	781		42.396	0	1	268100			6064	981	4846	4855	7201	7201					0.04065127988974382
EAVTNIRQP	9	Unmodified	_EAVTNIRQP_					0	0	0			REV__Harlequin-int_dup21|chr1:46331236-46332068:-|1.7847732754456611|0.0357277356843712|5.64|422.0|13|2|sense	REV__Harlequin-int_dup21|chr1:46331236-46332068:-|1.7847732754456611|0.0357277356843712|5.64|422.0|13|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.7755737304688	2	514.28018	1026.54581	1.9718	0.0010141	3.6303	0.001867	5.6021	0.002881	514.2819947692375	91.932	0.88654	91.932	91.668	92.555	0					28	20	3	0	0	0	0.027462	1	9949	9949		23.523	0	1	972910	+		6065	15826	4847	4856	7202	7202					0.0335967081216495
EAVTVLAHL	9	Unmodified	_EAVTVLAHL_					0	0	0			REV__nc|ENSG00000167723|Q8NET8-3|TRPV3	REV__nc|ENSG00000167723|Q8NET8-3|TRPV3	MULTI-MSMS	OvCa99_classI_Rep5	1	476.7770690917969	2	476.776742	951.538931	2.3014	0.0010972	0.10477	4.9954E-05	2.4061	0.0011472	476.776700482261	98.716	1.1525	98.716	98.165	99.318	0					58	27	3	0	0	0	0.071436	2	10873	10873;10909		106.42	7.0402	1	1805400	+		6066	21305	4848	4857	7203;7204	7203					0.061223579315424104
EAVTVLAHL	9	Unmodified	_EAVTVLAHL_					0	0	0			REV__nc|ENSG00000167723|Q8NET8-3|TRPV3	REV__nc|ENSG00000167723|Q8NET8-3|TRPV3	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	476.776742	951.538931	2.3014	0.0010972	0.10477	4.9954E-05	2.4061	0.0011472	476.776700482261	98.716	1.1525	98.716	98.165	99.318	0	0.065052	-0.00016381	NaN	106.42	58	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1805400	+		6067	21305	4848	4857							0.061223579315424104
EAVTVLAHL	9	Unmodified	_EAVTVLAHL_					0	0	0			REV__nc|ENSG00000167723|Q8NET8-3|TRPV3	REV__nc|ENSG00000167723|Q8NET8-3|TRPV3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	476.776742	951.538931	-0.88304	-0.00042101	0.67588	0.00032224	-0.20716	-9.877E-05	476.7769923482571	99.417	0.99279	98.586	98.268	99.261	-0.83051	-0.065052	0.00038076	NaN	106.42	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65874	+		6068	21305	4848	4857							0.061223579315424104
EAWGYTLSRAR	11	Unmodified	_EAWGYTLSRAR_					0	0	0		ENST00000369763.4_1_1:111506314-111506515:-|nuORF	ENST00000369763.4_1_1:111506314-111506515:-|nuORF	ENST00000369763.4_1_1:111506314-111506515:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.2625732421875	3	437.226438	1308.65748	0.44182	0.00019318	-2.9435	-0.001287	-2.5017	-0.0010938	437.2242965926924	64.939	0.14577	61.454	61.358	61.504	-3.4854					4	2	2	0	0	0	0.025908	1	4635	4635		21.78	0	1	9364.4			6069	10903	4849	4858	7205	7205					0.015501051692808687
EAWVRSRQ	8	Unmodified	_EAWVRSRQ_					0	0	0			REV__chr1:201989576-201996147|98|13.55|0.71|4.26|+|1|None,RNPEP|1	REV__chr1:201989576-201996147|98|13.55|0.71|4.26|+|1|None,RNPEP|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.239501953125	2	516.27269	1030.53083	-0.44111	-0.00022773	-0.045135	-2.3302E-05	-0.48624	-0.00025103	516.2726915876351	47.011	0.56518	43.938	43.655	44.221	-3.0724					30	10	4	0	0	0	0.028476	1	2517	2517		30.504	0	1	156500	+		6070	15812	4850	4859	7206	7206					0.016782237348024864
EAYLGVEHVIL	11	Unmodified	_EAYLGVEHVIL_					0	0	0		tr|A0A7D6ZFY3|A0A7D6ZFY3_9CLOTDegT/DnrJ/EryC1/StrSfamilyaminotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16945PE=3SV=1	tr|A0A7D6ZFY3|A0A7D6ZFY3_9CLOTDegT/DnrJ/EryC1/StrSfamilyaminotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16945PE=3SV=1	tr|A0A7D6ZFY3|A0A7D6ZFY3_9CLOTDegT/DnrJ/EryC1/StrSfamilyaminotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16945PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.90631103515625	3	414.895806	1241.66559	1.0469	0.00043435	-3.1833	-0.0013207	-2.1364	-0.00088638	414.8942952083071	35.005	1.453	32.156	31.537	32.99	-2.849					51	28	3	0	0	0	0.026079	1	1163	1163		19.263	2.5453	1	68096			6071	35529	4851	4860	7207	7207					0.05442239366061585
EAYLLSVAKI	10	Unmodified	_EAYLLSVAKI_					0	0	0		nc|ENSG00000214198|Q6P2S7-2|TTC41P;nc|ENSG00000214198|Q6P2S7|TTC41P;ENST00000551270.1_1_12:104237536-104277386:-|nuORF	nc|ENSG00000214198|Q6P2S7-2|TTC41P	nc|ENSG00000214198|Q6P2S7-2|TTC41P	MULTI-MSMS	OvCa99_classI_Rep5	1	553.8285522460938	2	553.826432	1105.63831	2.7335	0.0015139	-0.78949	-0.00043724	1.944	0.0010767	553.8257830969825	86.532	0.53257	86.532	86.311	86.844	0					21	12	2	0	0	0	0.18931	1	9140	9140		96.034	16.321	1	823130			6072	15308	4852	4861	7208	7208					0.08971755825655237
EAYPWAVEV	9	Unmodified	_EAYPWAVEV_					0	0	0			REV__ENST00000469587.1_1_1:43919019-43919464:-|nuORF	REV__ENST00000469587.1_1_1:43919019-43919464:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.810302734375	2	532.258382	1062.50221	2.2774	0.0012122	3.5357	0.0018819	5.8131	0.0030941	532.2603804037954	108.27	0.51492	108.27	108.07	108.58	0					15	11	2	0	0	0	0.027441	1	12263	12263		58.782	19.976	1	243960	+		6073	25004	4853	4862	7209	7209					-0.026539386850117808
EAYRIYTPFDL	11	Unmodified	_EAYRIYTPFDL_					0	0	0		HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|60|2|sense	HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|60|2|sense	HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|60|2|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.769775390625	3	463.234599	1386.68197	-0.33383	-0.00015464	3.9817	0.0018445	3.6479	0.0016898	463.23668904628573	57.376	0.30534	54.031	53.832	54.138	-3.3449					9	5	2	0	0	0	0.025864	1	3730	3730		28.577	0	1	12269			6074	14478	4854	4863	7210	7210					0.004093205321396454
EAYTKLTDN	9	Unmodified	_EAYTKLTDN_					0	0	0		nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1;SOGA1-SAMHD1|2|fusion	nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1	nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.801513671875	2	527.756204	1053.49785	-0.69264	-0.00036554	-2.1427	-0.0011308	-2.8354	-0.0014964	527.7548563834362	61.464	1.051	61.464	61.071	62.122	0					18	10	2	0	0	0	0.027462	1	5399	5399		20.947	13.754	1	177310			6075	2169	4855	4864	7211	7211					-0.026754478985594687
EAYVGKRSPL	10	Unmodified	_EAYVGKRSPL_					0	0	0		ENST00000580048.1_1_18:72264474-72264810:-|nuORF;ENST00000577806.1_1_18:72261011-72264765:-|nuORF	ENST00000580048.1_1_18:72264474-72264810:-|nuORF	ENST00000580048.1_1_18:72264474-72264810:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	560.7977294921875	2	560.31148	1118.60841	0.98698	0.00055301	-2.3681	-0.0013269	-1.3811	-0.00077384	560.3101631748561	102.61	0.78934	100.41	99.99	100.78	-2.1994					25	14	3	0	0	0	0.026714	1	9212	9212		51.193	11.94	1	43853			6076	13962	4856	4865	7212	7212					0.053848168803369845
ECAKTRLHKA	10	Unmodified	_ECAKTRLHKA_					0	0	0			REV__ENSG00000196605|ENST00000397902|ZNF846	REV__ENSG00000196605|ENST00000397902|ZNF846	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.8292236328125	2	578.816407	1155.61826	1.2673	0.00073351	1.4458	0.00083683	2.713	0.0015703	578.8172349437065	92.322	0.67049	92.322	91.964	92.635	0					34	15	3	0	0	0	0.027088	1	9935	9935		19.997	3.99	1	583660	+		6077	22849	4857	4866	7213	7213					0.0466768161404616
ECARDSPCL	9	Carbamidomethyl (C)	_ECARDSPC(Carbamidomethyl (C))L_	ECARDSPC(1)L		EC(-39)ARDSPC(39)L		0	1	0		ENST00000349155.6_3_12:115109215-115109560:-|nuORF	ENST00000349155.6_3_12:115109215-115109560:-|nuORF	ENST00000349155.6_3_12:115109215-115109560:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	525.72509765625	2	525.720784	1049.42701	-0.30415	-0.0001599	3.1988	0.0016817	2.8947	0.0015218	525.7223503638074	60.84	1.0671	60.84	60.559	61.626	0					62	24	4	0	0	0	0.3076	1	5320	5320		62.107	7.3311	2	4681000			6078	10642	4858	4867	7214	7214	110				-0.09572187479398053
ECEELDSIQY	10	Unmodified	_ECEELDSIQY_					0	0	0			REV__tr|A0A553SU66|A0A553SU66_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06335PE=4SV=1	REV__tr|A0A553SU66|A0A553SU66_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06335PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	613.847412109375	2	614.755543	1227.49653	0.433	0.00026619	-2.9236	-0.0017973	-2.4906	-0.0015311	614.7538418088698	61.261	0.24917	57.831	57.694	57.944	-3.43					6	4	2	0	0	0	0.027021	1	4189	4189		10.265	0	1	15785	+		6079	31044	4859	4868	7215	7215					-0.1081145004964128
ECESLSELKG	10	Unmodified	_ECESLSELKG_					0	0	0		nc|ENSG00000110931|Q96RR4-7|CAMKK2	nc|ENSG00000110931|Q96RR4-7|CAMKK2	nc|ENSG00000110931|Q96RR4-7|CAMKK2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.80859375	2	547.755346	1093.49614	-2.0899	-0.0011448	-1.4343	-0.00078566	-3.5243	-0.0019304	548.2560112539923	49.184	0.36765	46.043	45.832	46.2	-3.1416					9	6	2	0	0	0	0.026891	1	2751	2751		24.519	0	1	12224			6080	14958	4860	4869	7216	7216					-0.0468682497885311
ECGKVFRHKF	10	Unmodified	_ECGKVFRHKF_					0	0	0		ENSG00000221923|ENST00000422689|ZNF880	ENSG00000221923|ENST00000422689|ZNF880	ENSG00000221923|ENST00000422689|ZNF880	MULTI-SECPEP	OvCa99_classI_Rep5	1	418.5451354980469	3	417.553609	1249.639	0.63897	0.00026681	1.6894	0.00070542	2.3284	0.00097223	417.5542096934524	21.209	0.25934	21.209	21.101	21.36	0					11	7	2	0	0	0	0.027298	1	92	92		22.58	2.5829	1	30711			6081	9235	4861	4870	7217	7217					0.024162719937066868
ECHWEKYNNRY	11	Unmodified	_ECHWEKYNNRY_					0	0	0		ENSG00000181562|ENST00000326842|EDDM3A	ENSG00000181562|ENST00000326842|EDDM3A	ENSG00000181562|ENST00000326842|EDDM3A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.3095092773438	3	514.557859	1540.65175	-1.0754	-0.00055335	3.3179	0.0017072	2.2425	0.0011539	514.559410168074	100.87	0.96261	98.6	98.342	99.304	-2.2665					40	19	5	0	0	0	0.026364	1	9066	9066		9.2118	0.41249	1	190690			6082	7937	4862	4871	7218	7218					-0.09695361404692449
ECHWEKYNNRY	11	Unmodified	_ECHWEKYNNRY_					0	0	0		ENSG00000181562|ENST00000326842|EDDM3A	ENSG00000181562|ENST00000326842|EDDM3A	ENSG00000181562|ENST00000326842|EDDM3A	MULTI-MATCH	OvCa9_classI_Rep2	2		3	514.557859	1540.65175	-0.61043	-0.0003141	3.4381	0.0017691	2.8277	0.001455	514.5595647433029	99.336	1.5393	98.506	97.969	99.509	-0.83052	-0.11155	0.00032478	NaN	9.2118	81	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85344			6083	7937	4862	4871							-0.09695361404692449
ECHYAEYEL	9	Unmodified	_ECHYAEYEL_					0	0	0			REV__ENSG00000156466|ENST00000287020|GDF6	REV__ENSG00000156466|ENST00000287020|GDF6	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.8125	2	578.734414	1155.45428	2.0479	0.0011852	-2.6438	-0.0015301	-0.59592	-0.00034488	578.7328313545752	84.268	1.0815	84.268	83.801	84.882	0					57	25	4	0	0	0	0.027433	1	8869	8869		71.296	23.38	1	4740900	+		6084	20479	4863	4872	7219	7219					-0.11723380667331185
ECHYAEYEL	9	Unmodified	_ECHYAEYEL_					0	0	0			REV__ENSG00000156466|ENST00000287020|GDF6	REV__ENSG00000156466|ENST00000287020|GDF6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	578.734414	1155.45428	-1.9821	-0.0011471	-1.9	-0.0010996	-3.8821	-0.0022467	578.7333420663866	86.548	0.40154	84.371	84.18	84.582	-2.1768	0.05127	0.00078836	NaN	71.296	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13053	+		6085	20479	4863	4872							-0.11723380667331185
ECIGLCRAL	9	Unmodified	_ECIGLCRAL_					0	0	0		nc|ENSG00000008838|O75448-2|MED24;ENSG00000008838|ENST00000394128|MED24;MED24|p.G459Efs*15|1|0.18|ENSG00000008838|chr17:40028859-40028860|-/T|frameshift_variant	nc|ENSG00000008838|O75448-2|MED24	nc|ENSG00000008838|O75448-2|MED24	MULTI-MSMS	OvCa99_classI_Rep5	1	489.7501525878906	2	489.24898	976.483407	-0.62383	-0.00030521	-1.1315	-0.00055357	-1.7553	-0.00085877	489.24866015695807	54.916	0.96942	54.916	54.59	55.559	0					53	22	5	0	0	0	0.18193	1	4447	4447		79.451	13.986	1	3021600			6086	925	4864	4873	7220	7220					-0.005775148520569928
ECILLSRWA	9	Unmodified	_ECILLSRWA_					0	0	0			REV__ENST00000542875.1_1_12:68845230-68845422:-|nuORF	REV__ENST00000542875.1_1_12:68845230-68845422:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.7702026367188	2	545.789327	1089.5641	-0.4707	-0.0002569	-2.7842	-0.0015196	-3.2549	-0.0017765	545.7874535474913	70.466	0.51264	70.466	70.21	70.722	0					18	12	2	0	0	0	0.027462	1	6743	6743		42.396	13.247	1	394210	+		6087	27386	4865	4874	7221	7221					0.022900894624854118
ECIRRFFPK	9	Unmodified	_ECIRRFFPK_					0	0	0		GBP6|p.T346Hfs*15|1|0.24|ENSG00000183347|chr1:89381853-89381854|-/C|frameshift_variant;ENSG00000183347|ENST00000370456|GBP6	GBP6|p.T346Hfs*15|1|0.24|ENSG00000183347|chr1:89381853-89381854|-/C|frameshift_variant	GBP6|p.T346Hfs*15|1|0.24|ENSG00000183347|chr1:89381853-89381854|-/C|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.7427368164062	2	598.323868	1194.63318	2.7262	0.0016311	-0.10407	-6.2269E-05	2.6221	0.0015689	598.323702509049	94.519	0.55488	94.519	94.177	94.732	0					32	12	3	0	0	0	0.027462	1	10260	10260		47.657	20.61	1	760900			6088	8069	4866	4875	7222	7222					0.043651734820741694
ECITPPRQTP	10	Unmodified	_ECITPPRQTP_					0	0	0			REV__nc|ENSG00000087303|Q14112-2|NID2	REV__nc|ENSG00000087303|Q14112-2|NID2	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.2451171875	2	571.287148	1140.55974	1.5041	0.00085929	-0.54467	-0.00031116	0.95947	0.00054813	571.7890542181266	111.14	0.30803	111.14	110.94	111.24	0					10	6	2	0	0	0	0.026519	1	12630	12630		59.931	23.484	1	76913	+		6089	17165	4867	4876	7223	7223					-0.004914197510743179
ECIWWIIV	8	Unmodified	_ECIWWIIV_					0	0	0		tr|A0A7D6VY70|A0A7D6VY70_9CLOTMazG-likeproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11560PE=4SV=1	tr|A0A7D6VY70|A0A7D6VY70_9CLOTMazG-likeproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11560PE=4SV=1	tr|A0A7D6VY70|A0A7D6VY70_9CLOTMazG-likeproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11560PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	531.2791137695312	2	531.278063	1060.54157	2.2456	0.001193	-1.6106	-0.00085567	0.63498	0.00033735	531.2772169408953	82.501	1.6127	82.501	82.101	83.714	0					71	37	3	0	0	0	0.59103	1	8548	8548		65.897	2.3636	1	16478000			6090	35321	4868	4877	7224	7224					0.01372490064863996
ECKIFGYKL	9	Unmodified	_ECKIFGYKL_					0	0	0			REV__ENSG00000237765|ENST00000422728|FAM200B	REV__ENSG00000237765|ENST00000422728|FAM200B	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.7926025390625	2	550.794078	1099.5736	1.258	0.0006929	0.21768	0.00011989	1.4757	0.00081279	550.7942782513085	67.623	1.2749	64.133	63.789	65.064	-3.4902					69	25	4	0	0	0	0.3076	1	4983	4983		62.107	9.0185	1	804180	+		6091	23424	4869	4878	7225	7225					0.027798577480098174
ECKKYILV	8	Unmodified	_ECKKYILV_					0	0	0		ENST00000418778.1_1_13:75403658-75403844:+|nuORF	ENST00000418778.1_1_13:75403658-75403844:+|nuORF	ENST00000418778.1_1_13:75403658-75403844:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.2980041503906	2	498.283346	994.552139	0.18654	9.2948E-05	2.5513	0.0012713	2.7379	0.0013642	498.28442174714104	68.516	0.68899	65.026	64.818	65.507	-3.4902					24	13	2	0	0	0	0.028476	1	5093	5093		31.955	1.4512	1	78841			6092	11646	4870	4879	7226	7226					0.054644727193021936
ECKQHEIITI	10	Unmodified	_ECKQHEIITI_					0	0	0			REV__nc|ENSG00000167757|Q9UBX7|KLK11	REV__nc|ENSG00000167757|Q9UBX7|KLK11	MULTI-MSMS	OvCa9_classI_Rep2	2	607.31494140625	2	607.315906	1212.61726	-0.66897	-0.00040628	-2.3581	-0.0014321	-3.0271	-0.0018384	607.3143684506753	105.84	1.7433	105.4	104.95	106.69	-0.43642					110	34	4	0	0	0	0.51634	1	9906	9906		40.058	0	1	513880	+		6093	28986	4871	4880	7227	7227					0.019454224544915633
ECKVDILYY	9	Unmodified	_ECKVDILYY_					0	0	0		nc|ENSG00000173826|Q9H252-3|KCNH6;nc|ENSG00000173826|Q9H252-2|KCNH6;ENSG00000173826|ENST00000314672|KCNH6;nc|ENSG00000173826|Q9H252-1|KCNH6	nc|ENSG00000173826|Q9H252-3|KCNH6	nc|ENSG00000173826|Q9H252-3|KCNH6	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.8366088867188	2	573.281	1144.54745	1.9443	0.0011146	4.203	0.0024095	6.1473	0.0035241	573.2830782997299	85.101	0.45043	85.101	84.841	85.292	0					23	10	3	0	0	0	0.027449	1	8944	8944		31.955	7.4357	1	457400			6094	7418	4872	4881	7228	7228					-0.019044562141289134
ECKVDILYY	9	Unmodified	_ECKVDILYY_					0	0	0		nc|ENSG00000173826|Q9H252-3|KCNH6;nc|ENSG00000173826|Q9H252-2|KCNH6;ENSG00000173826|ENST00000314672|KCNH6;nc|ENSG00000173826|Q9H252-1|KCNH6	nc|ENSG00000173826|Q9H252-3|KCNH6	nc|ENSG00000173826|Q9H252-3|KCNH6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	573.281	1144.54745	-1.3913	-0.00079763	3.7836	0.0021691	2.3923	0.0013714	573.282992744922	87.26	0.97316	85.083	84.784	85.757	-2.1768	-0.0089442	-6.9647E-05	NaN	24.203	31	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37568			6095	7418	4872	4881							-0.019044562141289134
ECLASVTKGR	10	Unmodified	_ECLASVTKGR_					0	0	0			REV__ENST00000411704.1_1_3:196668391-196669296:-|nuORF	REV__ENST00000411704.1_1_3:196668391-196669296:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	532.2832641601562	2	532.281866	1062.54918	-2.0733	-0.0011036	1.1361	0.00060475	-0.93719	-0.00049885	532.2819304789259	103.84	2.217	103.84	103.14	105.36	0					90	51	4	0	0	0	0.48398	1	11681	11681		56.434	3.0823	1	16092000	+		6096	25491	4873	4882	7229	7229					0.02040597594486826
ECLEAPGCHA	10	Unmodified	_ECLEAPGCHA_					0	0	0			REV__ENST00000483781.5_1_2:98330105-98349944:+|nuORF	REV__ENST00000483781.5_1_2:98330105-98349944:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7941284179688	2	515.210052	1028.40555	-0.03468	-1.7868E-05	-2.1855	-0.001126	-2.2202	-0.0011439	515.2081721781717	122.32	0.49854	120.95	120.76	121.26	-1.3666					20	9	3	0	0	0	0.027056	1	11528	11528		20.947	0	1	35076	+		6097	18217	4874	4883	7230	7230					-0.10751572508092977
ECLKKALKI	9	Unmodified	_ECLKKALKI_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MSMS	OvCa9_classI_Rep3	3	523.32373046875	2	523.325545	1044.63654	-0.37111	-0.00019421	-3.101	-0.0016228	-3.4721	-0.001817	523.3237349076933	132.36	1.5282	131.23	130.94	132.47	-1.1249					65	30	3	0	0	0	0.33652	1	10589	10589		58.782	2.0609	1	96476			6098	1407	4875	4884	7231	7231					0.11600423536060589
ECMLQIVCR	9	Unmodified	_ECMLQIVCR_					0	0	0		PLEKHB2|p.D74E|1|0.24|ENSG00000115762|chr2:131126715-131126715|C/G|missense_variant	PLEKHB2|p.D74E|1|0.24|ENSG00000115762|chr2:131126715-131126715|C/G|missense_variant	PLEKHB2|p.D74E|1|0.24|ENSG00000115762|chr2:131126715-131126715|C/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.7947387695312	2	547.761397	1093.50824	-0.61567	-0.00033724	-3.1069	-0.0017018	-3.7225	-0.0020391	547.7591524956216	61.357	0.59343	61.357	61.071	61.665	0					28	13	3	0	0	0	0.027462	1	5413	5413		32.812	6.1195	1	2461900			6099	15508	4876	4885	7232	7232					-0.0347720304100676
ECNKLCMKL	9	Unmodified	_ECNKLCMKL_					0	0	0			REV__SLC9C2|p.I375Sfs*38|1|0.06|ENSG00000162753|chr1:173557432-173557432|T/-|frameshift_variant	REV__SLC9C2|p.I375Sfs*38|1|0.06|ENSG00000162753|chr1:173557432-173557432|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.8073120117188	2	541.263773	1080.51299	-1.1741	-0.00063548	1.552	0.00084006	0.37797	0.00020458	541.2646391435807	103.94	1.0466	101.82	101.28	102.32	-2.1192					29	19	2	0	0	0	0.027447	1	9448	9448		47.657	7.0847	1	28200	+		6100	20776	4877	4886	7233	7233					-0.024043188982432184
ECPEIPQSER	10	Unmodified	_ECPEIPQSER_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2;nc|ENSG00000257743|Q2M2H8-3|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	593.3041381835938	2	594.271695	1186.52884	-0.93027	-0.00055283	-2.5862	-0.0015369	-3.5165	-0.0020898	594.2700678253786	72.684	1.0174	69.288	69.058	70.076	-3.3961					50	20	3	0	0	0	0.026968	1	5609	5609		29.17	3.596	1	276890			6101	9475	4878	4887	7234	7234					-0.05696617855983277
ECPEIPQSER	10	Unmodified	_ECPEIPQSER_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2;nc|ENSG00000257743|Q2M2H8-3|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	594.271695	1186.52884	-0.049294	-2.9294E-05	-2.9853	-0.0017741	-3.0346	-0.0018034	594.2697490644797	71.804	0.94316	69.297	68.752	69.695	-2.5072	0.0044184	-0.00035331	NaN	38.754	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50383			6102	9475	4878	4887							-0.05696617855983277
ECPKCGKCYF	10	Unmodified	_ECPKCGKCYF_					0	0	0		ENST00000482360.5_1_1:6645916-6646228:+|nuORF;ENSG00000204859|ENST00000377674|ZBTB48	ENST00000482360.5_1_1:6645916-6646228:+|nuORF	ENST00000482360.5_1_1:6645916-6646228:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.8221435546875	2	589.24558	1176.47661	1.5805	0.00093132	0.13337	7.8587E-05	1.7139	0.0010099	589.2456066117312	130.06	0.42778	130.06	129.82	130.25	0					13	8	2	0	0	0	0.026994	1	15107	15107		32.812	9.2897	1	44069			6103	9033	4879	4888	7235	7235					-0.10457195794947438
ECPLGWHGPG	10	Unmodified	_ECPLGWHGPG_					0	0	0		ENST00000564397.5_1_16:5077177-5078281:-|nuORF;ENST00000568202.5_1_16:5075546-5083878:-|nuORF;ENSG00000103174|ENST00000312251|NAGPA	ENST00000564397.5_1_16:5077177-5078281:-|nuORF	ENST00000564397.5_1_16:5077177-5078281:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.2861938476562	2	526.734551	1051.45455	-1.1736	-0.00061819	2.7478	0.0014474	1.5742	0.00082917	526.7358564446479	102.91	0.44342	102.22	101.93	102.38	-0.68459					13	8	2	0	0	0	0.026982	1	9499	9499		30.504	1.3541	1	19963			6104	2290	4880	4889	7236	7236					-0.06911916156832376
ECPLLLLL	8	Unmodified	_ECPLLLLL_					0	0	0			REV__ENSG00000088812|ENST00000262919|ATRN	REV__ENSG00000088812|ENST00000262919|ATRN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	457.7698974609375	2	457.274989	912.535426	0.064604	2.9542E-05	2.5994	0.0011886	2.664	0.0012182	457.27679785977085	66.779	1.577	63.289	62.756	64.333	-3.4902					51	31	3	0	0	0	0.028476	1	4953	4953		29.842	0	1	39114	+		6105	17181	4881	4890	7237	7237					0.07565971833355434
ECPLQHLR	8	Unmodified	_ECPLQHLR_					0	0	0		ENST00000273582.9_2_3:197421346-197422755:-|nuORF	ENST00000273582.9_2_3:197421346-197422755:-|nuORF	ENST00000273582.9_2_3:197421346-197422755:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.2966003417969	2	498.258194	994.501834	-0.47277	-0.00023556	-0.051017	-2.542E-05	-0.52379	-0.00026098	498.25828947577065	77.518	0.24091	74.702	74.488	74.729	-2.8165					7	4	2	0	0	0	0.028476	1	6185	6185		30.504	3.8107	1	411300			6106	10010	4882	4891	7238	7238					0.004363631141586666
ECQEMHGEF	9	Oxidation (M)	_ECQEM(Oxidation (M))HGEF_		ECQEM(1)HGEF		ECQEM(53)HGEF	0	0	1		nc|ENSG00000050438|Q2Y0W8-7|SLC4A8;nc|ENSG00000050438|Q2Y0W8-4|SLC4A8;nc|ENSG00000050438|Q2Y0W8-5|SLC4A8;nc|ENSG00000050438|Q2Y0W8-3|SLC4A8;ENST00000319957.10_1_12:51818771-51890959:+|nuORF;nc|ENSG00000050438|Q2Y0W8-2|SLC4A8;ENSG00000050438|ENST00000453097|SLC4A8	nc|ENSG00000050438|Q2Y0W8-7|SLC4A8	nc|ENSG00000050438|Q2Y0W8-7|SLC4A8	MULTI-MSMS	OvCa99_classI_Rep5	1	563.2061157226562	2	563.202424	1124.39029	2.5455	0.0014336	3.1888	0.001796	5.7343	0.0032296	563.2039987858079	110.66	1.7092	110.66	110.35	112.06	0					85	37	4	0	0	0	0.38529	1	12575	12575		53.351	10.877	1	2428400			6107	1181	4883	4892	7239	7239		44			-0.16692484095938198
ECQLLRLQ	8	Unmodified	_ECQLLRLQ_					0	0	0		HS6ST2|p.T343Cfs*20|1|0.27|ENSG00000171004|chrX:132628995-132629014|TGCAGGGATGCTTTCCATGT/-|frameshift_variant;nc|ENSG00000171004|Q96MM7-2|HS6ST2;nc|ENSG00000171004|Q96MM7-3|HS6ST2;nc|ENSG00000171004|Q96MM7|HS6ST2;ENSG00000171004|ENST00000370833|HS6ST2	HS6ST2|p.T343Cfs*20|1|0.27|ENSG00000171004|chrX:132628995-132629014|TGCAGGGATGCTTTCCATGT/-|frameshift_variant	HS6ST2|p.T343Cfs*20|1|0.27|ENSG00000171004|chrX:132628995-132629014|TGCAGGGATGCTTTCCATGT/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.793701171875	2	501.773677	1001.5328	-1.433	-0.00071906	-2.8581	-0.0014341	-4.2912	-0.0021532	501.77209658042	85.449	1.0958	83.229	82.84	83.936	-2.2204					45	21	3	0	0	0	0.028476	1	5102	5102		37.159	1.5408	1	84907			6108	7161	4884	4893	7240	7240					0.0320951642838736
ECRNRLLQA	9	Unmodified	_ECRNRLLQA_					0	0	0		nc|ENSG00000123992|Q9ULA0-2|DNPEP;ENSG00000123992|ENST00000273075|DNPEP;ENST00000523527.5_1_2:220250965-220252516:-|nuORF;ENST00000460963.5_1_2:220250088-220252486:-|nuORF	nc|ENSG00000123992|Q9ULA0-2|DNPEP	nc|ENSG00000123992|Q9ULA0-2|DNPEP	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.3375854492188	2	551.792932	1101.57131	2.2712	0.0012532	-3.9859	-0.0021994	-1.7148	-0.00094619	551.7904933115111	84.337	0.49569	84.337	84.135	84.631	0					18	11	2	0	0	0	0.027441	1	8792	8792		40.778	0	1	1461300			6109	3620	4885	4894	7241	7241					0.024588220629311763
ECSGTSRK	8	Unmodified	_ECSGTSRK_					0	0	0			REV__ENST00000263461.10_1_10:122668275-122668440:+|nuORF	REV__ENST00000263461.10_1_10:122668275-122668440:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	434.20379638671875	2	434.203084	866.391615	1.2394	0.00053816	-0.82374	-0.00035767	0.41569	0.00018049	434.2025952345841	127.91	1.6798	127.68	127.34	129.02	-0.22697					69	33	3	0	0	0	0.75723	1	12544	12544		23.042	1.0826	1	238510	+		6110	24003	4886	4895	7242	7242					-0.046924819448804556
ECSLGWLKR	9	Unmodified	_ECSLGWLKR_					0	0	0			REV__ENSG00000224109|ENST00000417339|CENPVL3	REV__ENSG00000224109|ENST00000417339|CENPVL3	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.7880859375	2	546.286951	1090.55935	0.79356	0.00043351	3.1958	0.0017458	3.9894	0.0021794	546.7881306102663	153.21	1.4979	153.21	152.67	154.17	0					62	30	3	0	0	0	0.027462	1	17919	17919		45.952	20.502	1	29368	+		6111	23356	4887	4896	7243	7243					0.017692053197151836
ECTGIVDSTN	10	Unmodified	_ECTGIVDSTN_					0	0	0			REV__nc|ENSG00000065613|Q9H2G2-2|SLK	REV__nc|ENSG00000065613|Q9H2G2-2|SLK	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.8221435546875	2	519.724046	1037.43354	0.97085	0.00050457	2.412	0.0012536	3.3828	0.0017581	519.7253216306068	133.13	0.13605	133.13	133.04	133.17	0					4	2	2	0	0	0	0.026867	1	15470	15470		35.152	11.629	1	28361	+		6112	16799	4888	4897	7244	7244					-0.08367971047005085
ECTMLTYFI	9	Unmodified	_ECTMLTYFI_					0	0	0			REV__ENSG00000151617|ENST00000651419|EDNRA	REV__ENSG00000151617|ENST00000651419|EDNRA	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.8065795898438	2	560.756304	1119.49805	2.1915	0.0012289	-4.3161	-0.0024203	-2.1246	-0.0011914	560.7537710445807	127.03	0.3163	127.03	126.91	127.23	0					8	6	2	0	0	0	0.027462	1	14704	14704		38.806	4.6336	1	78816	+		6113	20243	4889	4898	7245	7245					-0.05691487494573266
ECVLTREAN	9	Unmodified	_ECVLTREAN_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.P12974Lfs*4|1|0.05|ENSG00000155657|chr2:178631204-178631205|-/GTACA|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.3243408203125	2	517.750398	1033.48624	0.087989	4.5556E-05	2.4085	0.001247	2.4964	0.0012925	517.7511165032823	84.01	0.24499	81.347	81.167	81.412	-2.6629					6	4	2	0	0	0	0.027425	1	7013	7013		79.713	41.901	1	12300			6114	5793;36288	4890	4899	7246	7246					-0.02915968193565277
ECYRQAQP	8	Unmodified	_ECYRQAQP_					0	0	0			REV__ENST00000541178.1_1_12:34175516-34175777:+|nuORF	REV__ENST00000541178.1_1_12:34175516-34175777:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.7886657714844	2	497.724184	993.433814	0.058657	2.9195E-05	0.34	0.00016923	0.39866	0.00019842	497.72519602217085	112.58	0.19829	111.07	110.95	111.15	-1.5111					6	3	2	0	0	0	0.028476	1	10403	10403		38.806	15.764	1	5744.6	+		6115	19589	4891	4900	7247	7247					-0.06316506536495581
EDAASDKENL	10	Unmodified	_EDAASDKENL_					0	0	0		sp|P16788|UL97_HCMVASerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL97PE=1SV=1	sp|P16788|UL97_HCMVASerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL97PE=1SV=1	sp|P16788|UL97_HCMVASerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL97PE=1SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.6311645507812	2	546.2462	1090.47785	2.1141	0.0011548	-2.2086	-0.0012064	-0.094547	-5.1646E-05	546.2450072060392	85.973	1.5523	85.973	85.705	87.257	0					99	37	5	0	0	0	0.026465	1	9096	9096		72.879	11.907	1	23947000			6116	32900	4892	4901	7248	7248					-0.06377243629185614
EDADKLIQV	9	Unmodified	_EDADKLIQV_					0	0	0		nc|ENSG00000007174|Q9NYC9-2|DNAH9;DNAH9|p.H4399Qfs*22|1|0.04|ENSG00000007174|chr17:11962220-11962220|T/-|frameshift_variant;ENSG00000007174|ENST00000262442|DNAH9	nc|ENSG00000007174|Q9NYC9-2|DNAH9	nc|ENSG00000007174|Q9NYC9-2|DNAH9	MULTI-MSMS	OvCa9_classI_Rep3	3	515.7740478515625	2	515.774396	1029.53424	0.6844	0.000353	-0.88489	-0.0004564	-0.20049	-0.00010341	515.7739065708082	110.02	1.9535	108.87	108.45	110.41	-1.1444					80	37	3	0	0	0	0.16562	1	7932	7932		82.241	2.5279	1	355220			6117	749	4893	4902	7249	7249					0.02065428998139396
EDAEAPGEQL	10	Unmodified	_EDAEAPGEQL_					0	0	0		nc|nan|Q9UFG5-2|C19orf25;ENSG00000119559|ENST00000585675|C19orf25;ENST00000592486.1_1_19:1475033-1475351:-|nuORF	nc|nan|Q9UFG5-2|C19orf25	nc|nan|Q9UFG5-2|C19orf25	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2619018554688	2	529.735468	1057.45638	2.6397	0.0013984	4.4167	0.0023397	7.0565	0.0037381	529.7376723179375	86.543	0.2476	86.543	86.431	86.679	0					6	5	2	0	0	0	0.026714	1	9120	9120		51.193	3.5354	1	96582			6118	15420	4894	4903	7250	7250					-0.07004628657887224
EDAEIHNKT	9	Unmodified	_EDAEIHNKT_					0	0	0		nc|ENSG00000143502|Q5VX71-2|SUSD4;ENSG00000143502|ENST00000366878|SUSD4;ENST00000497669.1_1_1:223437930-223465871:-|nuORF;nc|ENSG00000143502|Q5VX71-4|SUSD4;nc|ENSG00000143502|Q5VX71-3|SUSD4	nc|ENSG00000143502|Q5VX71-2|SUSD4	nc|ENSG00000143502|Q5VX71-2|SUSD4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.8120727539062	2	528.751453	1055.48835	-1.782	-0.00094226	-0.69564	-0.00036782	-2.4777	-0.0013101	528.7506973088525	71.764	0.97455	68.308	67.975	68.949	-3.4563					38	19	3	0	0	0	0.027462	1	5540	5540		39.253	0	1	48674			6119	5063	4895	4904	7251	7251					-0.03717216184099925
EDAGGKKLR	9	Unmodified	_EDAGGKKLR_					0	0	0		ENST00000456101.6_1_6:109766698-109772967:-|nuORF;MICAL1|p.G901Afs*11|1|0.19|ENSG00000135596|chr6:109445501-109445502|-/ACCCAGAAGACCTGGGCTG|frameshift_variant;nc|ENSG00000135596|Q8TDZ2-2|MICAL1;ENSG00000135596|ENST00000358807|MICAL1;nc|ENSG00000135596|Q8TDZ2-4|MICAL1	ENST00000456101.6_1_6:109766698-109772967:-|nuORF	ENST00000456101.6_1_6:109766698-109772967:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.79638671875	2	487.274898	972.535243	-0.25833	-0.00012588	3.1252	0.0015228	2.8668	0.0013969	487.27650882343295	53.085	0.38954	53.085	52.741	53.131	0					11	8	2	0	0	0	0.027426	1	4159	4159		44.117	3.3386	1	85414			6120	12106	4896	4905	7252	7252					0.04787688157705361
EDAIHTMIEN	10	Oxidation (M)	_EDAIHTM(Oxidation (M))IEN_		EDAIHTM(1)IEN		EDAIHTM(51)IEN	0	0	1		nc|ENSG00000111799|Q99715-4|COL12A1;ENSG00000111799|ENST00000322507|COL12A1	nc|ENSG00000111799|Q99715-4|COL12A1	nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-MSMS	OvCa99_classI_Rep5	1	594.7676391601562	2	594.763703	1187.51285	1.7302	0.001029	3.4925	0.0020772	5.2226	0.0031062	594.7656888910103	127.31	1.4135	127.31	127.01	128.42	0					79	30	4	0	0	0	0.52321	1	14778	14778		51.335	8.861	1	1053200			6121	2854	4897	4906	7253	7253		91			-0.07340324092865558
EDALAERYQV	10	Unmodified	_EDALAERYQV_					0	0	0			REV__ENSG00000177383|ENST00000317897|MAGEF1	REV__ENSG00000177383|ENST00000317897|MAGEF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.2960205078125	2	597.293485	1192.57242	-0.28449	-0.00016993	0.43928	0.00026238	0.15479	9.2452E-05	597.2937479483943	99.592	3.0185	97.266	95.575	98.593	-2.3253					101	56	4	0	0	0	0.50999	1	8898	8898		52.937	3.4007	1	203600	+		6122	22002	4898	4907	7254	7254					-0.016166850871968563
EDALAERYQV	10	Unmodified	_EDALAERYQV_					0	0	0			REV__ENSG00000177383|ENST00000317897|MAGEF1	REV__ENSG00000177383|ENST00000317897|MAGEF1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	597.293485	1192.57242	-0.80009	-0.00047789	0.84064	0.00050211	0.040553	2.4222E-05	597.2939999397254	98.262	3.2067	97.369	95.694	98.901	-0.89305	0.010018	0.00074887	NaN	52.937	120	59	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180510	+		6123	22002	4898	4907							-0.016166850871968563
EDALAERYQV	10	Unmodified	_EDALAERYQV_					0	0	0			REV__ENSG00000177383|ENST00000317897|MAGEF1	REV__ENSG00000177383|ENST00000317897|MAGEF1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	597.293485	1192.57242	0.84533	0.00050491	-0.43798	-0.0002616	0.40734	0.0002433	597.2932993848924	99.127	2.752	97.442	95.592	98.344	-1.685	0.082768	-0.00077856	NaN	52.937	94	47	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253400	+		6124	22002	4898	4907							-0.016166850871968563
EDANFRQL	8	Unmodified	_EDANFRQL_					0	0	0		tr|A0A553SUJ4|A0A553SUJ4_NIACIGuaninedeaminaseOS=NialliacirculansOX=1397GN=guaDPE=3SV=1	tr|A0A553SUJ4|A0A553SUJ4_NIACIGuaninedeaminaseOS=NialliacirculansOX=1397GN=guaDPE=3SV=1	tr|A0A553SUJ4|A0A553SUJ4_NIACIGuaninedeaminaseOS=NialliacirculansOX=1397GN=guaDPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.78240966796875	2	496.743431	991.472308	-1.1454	-0.00056896	0.66214	0.00032891	-0.48325	-0.00024005	496.7451334481179	44.98	0.36131	41.941	41.714	42.075	-3.0385					9	6	2	0	0	0	0.028476	1	2241	2241		19.997	0	1	11478			6125	34616	4899	4908	7255	7255					-0.023768776303313643
EDANVRVAI	9	Unmodified	_EDANVRVAI_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM;ASPM|p.S752Lfs*5|1|0.13|ENSG00000066279|chr1:197133497-197133515|CAGTATAAGCTCTGAGAGA/-|frameshift_variant	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OvCa9_classI_Rep2	2	493.76605224609375	2	493.766906	985.519259	0.035446	1.7502E-05	-0.50839	-0.00025103	-0.47295	-0.00023353	493.76662126445797	67.226	1.1895	64.565	63.95	65.139	-2.661					65	23	4	0	0	0	0.40667	1	5281	5281		51.335	1.3109	1	1407400			6126	1348	4900	4909	7256	7256					0.025919819208070294
EDAVAALAVTL	11	Unmodified	_EDAVAALAVTL_					0	0	0		tr|A0A553SF48|A0A553SF48_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_08245PE=4SV=1	tr|A0A553SF48|A0A553SF48_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_08245PE=4SV=1	tr|A0A553SF48|A0A553SF48_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_08245PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.7991333007812	2	536.797872	1071.58119	2.127	0.0011418	-0.15114	-8.113E-05	1.9759	0.0010607	536.7975947072633	93.846	1.0581	93.846	93.632	94.69	0					44	24	4	0	0	0	0.41398	1	10193	10193		60.118	3.6845	1	2617400			6127	32990	4901	4910	7257	7257					0.0482628854927043
EDAVCTKAF	9	Unmodified	_EDAVCTKAF_					0	0	0			REV__nc|ENSG00000163631|P02768-3|ALB;REV__CON__P02769	REV__CON__P02769	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.248779296875	2	492.228768	982.442982	-0.39084	-0.00019238	0.15855	7.8043E-05	-0.23229	-0.00011434	492.2293003585031	44.834	0.27177	44.834	44.706	44.977	0					7	5	2	0	0	0	0.027462	1	3053	3053		30.504	10.507	1	48489	+	+	6128	16184;16185	4902	4911	7258	7258					-0.048941579708412064
EDAVEAIRG	9	Unmodified	_EDAVEAIRG_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4;ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.29315185546875	2	480.243264	958.471974	0.20521	9.8551E-05	-2.4156	-0.0011601	-2.2104	-0.0010615	480.2417102348897	61.537	0.60931	58.08	57.866	58.475	-3.4577					17	12	2	0	0	0	0.027462	1	4235	4235		27.882	0	1	62244			6129	7428	4903	4912	7259	7259					-0.008922973501853448
EDAVKLNQN	9	Unmodified	_EDAVKLNQN_					0	0	0			REV__nc|ENSG00000182670|P53804-3|TTC3	REV__nc|ENSG00000182670|P53804-3|TTC3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.2705078125	2	515.76182	1029.50909	-0.5786	-0.00029842	0.78179	0.00040322	0.20319	0.0001048	515.7622430543287	103.16	0.834	100.96	100.88	101.72	-2.1994					19	15	2	0	0	0	0.027426	1	9389	9389		53.351	0	1	7601.2	+		6130	22310	4904	4913	7260	7260					-0.004486258044153146
EDCFILNVQ	9	Unmodified	_EDCFILNVQ_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.3463745117188	2	540.755149	1079.49575	-0.25709	-0.00013902	-2.6587	-0.0014377	-2.9158	-0.0015767	540.7535367270146	81.986	1.9382	79.69	79.284	81.222	-2.2963					77	38	4	0	0	0	0.027417	1	4668	4668		29.15	0	1	267500	+		6131	22731	4905	4914	7261	7261					-0.040821999080208116
EDCKVETLFAK	11	Unmodified	_EDCKVETLFAK_					0	0	0			REV__tr|A0A553SM66|A0A553SM66_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21985PE=4SV=1	REV__tr|A0A553SM66|A0A553SM66_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21985PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	427.7294616699219	3	428.216439	1281.62749	-0.90752	-0.00038861	2.9043	0.0012437	1.9968	0.00085504	428.21785063866304	43.586	0.47431	43.586	43.478	43.952	0					13	10	2	0	0	0	0.025271	1	2891	2891		45.908	14.84	1	51075	+		6132	30300	4906	4915	7262	7262					-0.0020601461094429396
EDDEAFEARV	10	Unmodified	_EDDEAFEARV_					0	0	0		ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.80126953125	2	590.759475	1179.5044	2.2001	0.0012997	0.63832	0.00037709	2.8384	0.0016768	590.7598515868328	77.08	0.4539	77.08	76.882	77.336	0					17	10	2	0	0	0	0.027028	1	7792	7792		24.519	6.1948	1	532640			6133	5218	4907	4916	7263	7263					-0.0781755473785779
EDDEGLSLV	9	Unmodified	_EDDEGLSLV_					0	0	0			REV__ENST00000530365.1_1_11:121500185-121500269:+|nuORF	REV__ENST00000530365.1_1_11:121500185-121500269:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.2496643066406	2	488.727112	975.439671	-0.81795	-0.00039975	2.2408	0.0010951	1.4228	0.00069537	488.7281650417447	51.892	0.55664	51.892	51.747	52.304	0					16	12	2	0	0	0	0.027448	1	4019	4019		35.618	8.9254	1	202930	+		6134	27202	4908	4917	7264	7264					-0.04903129543833984
EDDEGWMSH	9	Unmodified	_EDDEGWMSH_					0	0	0		ENSG00000153015|ENST00000381070|CWC27;ENST00000545000.1_1_5:64180068-64314145:+|nuORF	ENSG00000153015|ENST00000381070|CWC27	ENSG00000153015|ENST00000381070|CWC27	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.8284912109375	2	553.198196	1104.38184	-1.2298	-0.00068034	1.9627	0.0010858	0.73287	0.00040542	553.1989126067604	118.86	0.88017	117.52	117.26	118.14	-1.3444					40	16	5	0	0	0	0.027462	1	11190	11190		45.952	15.634	1	57603			6135	5655	4909	4918	7265	7265					-0.1661771474091438
EDDEGWMSH	9	Unmodified	_EDDEGWMSH_					0	0	0		ENSG00000153015|ENST00000381070|CWC27;ENST00000545000.1_1_5:64180068-64314145:+|nuORF	ENSG00000153015|ENST00000381070|CWC27	ENSG00000153015|ENST00000381070|CWC27	MULTI-MATCH	OvCa9_classI_Rep2	2		2	553.198196	1104.38184	-0.56561	-0.00031289	0.92886	0.00051384	0.36325	0.00020095	553.1984898684196	118.06	0.74485	117.91	117.49	118.23	-0.14755	0.2471	-0.0004651	NaN	45.952	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25288			6136	5655	4909	4918							-0.1661771474091438
EDDEGWMSH	9	Unmodified	_EDDEGWMSH_					0	0	0		ENSG00000153015|ENST00000381070|CWC27;ENST00000545000.1_1_5:64180068-64314145:+|nuORF	ENSG00000153015|ENST00000381070|CWC27	ENSG00000153015|ENST00000381070|CWC27	MULTI-MATCH	OvCa9_classI_Rep3	3		2	553.198196	1104.38184	-0.46291	-0.00025608	0.94131	0.00052073	0.4784	0.00026465	553.1982221855844	118.59	0.89352	117.56	117.39	118.28	-1.0271	-0.10159	-0.00045133	NaN	45.952	30	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24823			6137	5655	4909	4918							-0.1661771474091438
EDDETLIEANP	11	Unmodified	_EDDETLIEANP_					0	0	0			REV__nc|ENSG00000164796|Q7Z407-5|CSMD3	REV__nc|ENSG00000164796|Q7Z407-5|CSMD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	623.3153076171875	2	623.277697	1244.54084	-2.0786	-0.0012955	-1.8385	-0.0011459	-3.917	-0.0024414	623.7781449977618	103.8	0.12193	103.8	103.73	103.85	0					4	2	2	0	0	0	0.02605	1	11614	11614		23.523	6.1577	1	131250	+		6138	21020	4910	4919	7266	7266					-0.07164722631773657
EDDIEKSIIF	10	Unmodified	_EDDIEKSIIF_					0	0	0		RP1|p.S868Tfs*16|1|0.05|ENSG00000104237|chr8:54626484-54626485|-/CTGGTCCTTCTAATAAT|frameshift_variant;ENSG00000104237|ENST00000220676|RP1	RP1|p.S868Tfs*16|1|0.05|ENSG00000104237|chr8:54626484-54626485|-/CTGGTCCTTCTAATAAT|frameshift_variant	RP1|p.S868Tfs*16|1|0.05|ENSG00000104237|chr8:54626484-54626485|-/CTGGTCCTTCTAATAAT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	604.8110961914062	2	604.805894	1207.59723	1.813	0.0010965	2.5518	0.0015433	4.3648	0.0026399	604.8088386455387	122.79	1.0677	122.79	122.45	123.51	0					37	22	2	0	0	0	0.46756	1	14156	14156		58.782	4.0056	1	1077700			6139	2360	4911	4920	7267	7267					0.0017394999551925139
EDDLDSLINEI	11	Unmodified	_EDDLDSLINEI_					0	0	0		ENSG00000156172|ENST00000286688|CFAP418	ENSG00000156172|ENST00000286688|CFAP418	ENSG00000156172|ENST00000286688|CFAP418	MULTI-SECPEP	OvCa99_classI_Rep5	1	638.0159301757812	2	638.301172	1274.58779	1.5946	0.0010178	1.3014	0.00083066	2.896	0.0018485	638.3019518883639	124.75	0.55678	124.75	124.47	125.02	0					25	11	3	0	0	0	0.025457	1	14379	14379		22.58	0	1	386120			6140	5824	4912	4921	7268	7268					-0.03851863080626572
EDDLECPEPT	10	Unmodified	_EDDLECPEPT_					0	0	0			REV__ENSG00000170458|ENST00000302014|CD14	REV__ENSG00000170458|ENST00000302014|CD14	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.3469848632812	2	574.226619	1146.43868	2.0136	0.0011563	0.19571	0.00011238	2.2093	0.0012687	574.226610450505	113.04	0.50091	113.04	112.83	113.33	0					18	10	2	0	0	0	0.026734	1	12901	12901		39.253	1.4413	1	182680	+		6141	21540	4913	4922	7269	7269					-0.12867711975059137
EDDLQIVIN	9	Unmodified	_EDDLQIVIN_					0	0	0		tr|A0A7D6ZWR5|A0A7D6ZWR5_9CLOTMannose-1-phosphateguanylyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18965PE=4SV=1	tr|A0A7D6ZWR5|A0A7D6ZWR5_9CLOTMannose-1-phosphateguanylyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18965PE=4SV=1	tr|A0A7D6ZWR5|A0A7D6ZWR5_9CLOTMannose-1-phosphateguanylyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18965PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.809814453125	2	529.771854	1057.52915	2.6545	0.0014063	-4.3492	-0.0023041	-1.6947	-0.0008978	529.7695494798716	96.258	0.50907	96.258	95.869	96.378	0					18	11	2	0	0	0	0.027462	1	10487	10487		30.318	7.2752	1	782680			6142	35851	4914	4923	7270	7270					0.002691251355372515
EDDVYLPSEI	10	Unmodified	_EDDVYLPSEI_					0	0	0		ENSG00000159495|ENST00000452443|TGM7	ENSG00000159495|ENST00000452443|TGM7	ENSG00000159495|ENST00000452443|TGM7	MULTI-MSMS	OvCa9_classI_Rep3	3	590.2677612304688	2	590.274426	1178.5343	-7.705	-0.0045481	-2.0019	-0.0011817	-9.7069	-0.0057297	590.2732006658329	159.89	2.9332	158.56	157.96	160.89	-1.3316					148	58	4	0	0	0	0.6104	1	13890	13890		40.778	0.20554	1	239760			6143	6016	4915	4924	7271	7271					-0.04782615792510114
EDEAIRKL	8	Unmodified	_EDEAIRKL_					0	0	0		tr|A0A7D6ZJC9|A0A7D6ZJC9_9CLOTrRNAmethyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08255PE=4SV=1	tr|A0A7D6ZJC9|A0A7D6ZJC9_9CLOTrRNAmethyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08255PE=4SV=1	tr|A0A7D6ZJC9|A0A7D6ZJC9_9CLOTrRNAmethyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08255PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.3123474121094	2	487.269281	972.52401	2.4929	0.0012147	-0.48422	-0.00023594	2.0086	0.00097875	487.26896006106045	99.383	0.37541	99.383	99.195	99.57	0					16	8	2	0	0	0	0.028476	1	10987	10987		76.847	19.035	1	624280			6144	35640	4916	4925	7272	7272					0.03664866063570571
EDEAPGQSGL	10	Unmodified	_EDEAPGQSGL_					0	0	0		ENSG00000100647|ENST00000342745|SUSD6	ENSG00000100647|ENST00000342745|SUSD6	ENSG00000100647|ENST00000342745|SUSD6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.8300476074219	2	501.722361	1001.43017	-0.54692	-0.0002744	0.073961	3.7108E-05	-0.47296	-0.00023729	501.72227349841626	74.966	0.57792	71.735	71.483	72.061	-3.2308					15	11	2	0	0	0	0.026891	1	5924	5924		31.53	6.0796	1	20860			6145	2096	4917	4926	7273	7273					-0.07048897829361067
EDEAPGQSGL	10	Unmodified	_EDEAPGQSGL_					0	0	0		ENSG00000100647|ENST00000342745|SUSD6	ENSG00000100647|ENST00000342745|SUSD6	ENSG00000100647|ENST00000342745|SUSD6	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	501.722361	1001.43017	0.079648	3.9961E-05	0.18263	9.1629E-05	0.26228	0.00013159	501.72230269373256	71.809	0.65829	71.809	71.507	72.165	0	0.036745	7.3731E-06	NaN	18.262	33	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2065100			6146	2096	4917	4926							-0.07048897829361067
EDEAVPKEV	9	Unmodified	_EDEAVPKEV_					0	0	0			REV__ENSG00000128891|ENST00000416810|CCDC32	REV__ENSG00000128891|ENST00000416810|CCDC32	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3173828125	2	508.250754	1014.48696	2.208	0.0011222	-0.97563	-0.00049587	1.2324	0.00062638	508.2502708061821	108.38	0.47146	108.38	108.2	108.67	0					15	10	2	0	0	0	0.02741	1	12247	12247		34.173	0	1	177940	+		6147	18875	4918	4927	7274	7274					-0.019708502728462918
EDEDRLNLAI	10	Unmodified	_EDEDRLNLAI_					0	0	0			REV__tr|A0A7D6VPS3|A0A7D6VPS3_9CLOTDNAgyrasesubunitAOS=ClostridiumintestinaleOX=36845GN=gyrAPE=3SV=1	REV__tr|A0A7D6VPS3|A0A7D6VPS3_9CLOTDNAgyrasesubunitAOS=ClostridiumintestinaleOX=36845GN=gyrAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	594.304443359375	2	594.298767	1186.58298	0.16637	9.8874E-05	-0.86787	-0.00051578	-0.7015	-0.0004169	594.2982637247995	76.399	2.3505	73.46	73.033	75.383	-2.9389					154	48	6	0	0	0	0.45822	1	6137	6137		60.118	5.0344	1	7818100	+		6148	31271	4919	4928	7275	7275					-0.002847024327593317
EDEECPLDSLV	11	Unmodified	_EDEECPLDSLV_					0	0	0			REV__ENSG00000198398|ENST00000354905|TMEM207	REV__ENSG00000198398|ENST00000354905|TMEM207	MULTI-SECPEP	OvCa99_classI_Rep5	1	625.76220703125	2	624.768651	1247.52275	0.28791	0.00017988	1.5527	0.00097009	1.8406	0.00115	624.7694146932545	162.23	0.60445	162.23	161.92	162.53	0					20	11	2	0	0	0	0.025806	1	19023	19023		31.53	3.6476	1	85858	+		6149	23016	4920	4929	7276	7276					-0.09111180878176128
EDEEDKEDKKG	11	Unmodified	_EDEEDKEDKKG_					0	0	0		nc|ENSG00000226266|Q9UIF8-4|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;ENSG00000123636|ENST00000392783|BAZ2B;nc|ENSG00000226266|Q9UIF8-2|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	441.20989990234375	3	441.196649	1320.56812	-0.19311	-8.5201E-05	-2.3774	-0.0010489	-2.5705	-0.0011341	441.52880140889073	43.847	0.38662	43.847	43.651	44.038	0					15	8	3	0	0	0	0.025864	1	2932	2932		28.577	8.9498	1	160040			6150	3610	4921	4930	7277	7277					-0.07934239091446216
EDEEELNHR	9	Unmodified	_EDEEELNHR_					0	0	0		ENSG00000115421|ENST00000238714|PAPOLG;PAPOLG|p.T602Hfs*16|1|0.05|ENSG00000115421|chr2:60793999-60794000|-/C|frameshift_variant;nc|ENSG00000115421|Q9BWT3-2|PAPOLG	ENSG00000115421|ENST00000238714|PAPOLG;nc|ENSG00000115421|Q9BWT3-2|PAPOLG	ENSG00000115421|ENST00000238714|PAPOLG	MULTI-MSMS	OvCa9_classI_Rep4_	4	585.7532348632812	2	585.754724	1169.49489	-0.14149	-8.2878E-05	-2.4655	-0.0014442	-2.607	-0.0015271	585.7530201042857	122.87	1.0414	121.5	121.16	122.2	-1.3666					44	20	3	0	0	0	0.40667	1	11612	11612		51.335	0	1	91285			6151	3096;14975	4922	4931	7278	7278					-0.08307323023382196
EDEEEQERERR	11	Unmodified	_EDEEEQERERR_					0	0	0		ENSG00000159166|ENST00000391967|LAD1	ENSG00000159166|ENST00000391967|LAD1	ENSG00000159166|ENST00000391967|LAD1	MULTI-MSMS	OvCa9_classI_Rep2	2	502.2259216308594	3	502.225602	1503.65498	1.1541	0.00057961	1.2438	0.00062468	2.3979	0.0012043	502.2263321518465	89.077	2.1286	87.709	87.428	89.557	-1.3676					124	42	5	0	0	0	0.70121	1	7831	7831		29.245	8.93	1	477000			6152	5989	4923	4932	7279	7279					-0.07670439817047736
EDEEIVPTVTF	11	Unmodified	_EDEEIVPTVTF_					0	0	0			REV__ENSG00000137090|ENST00000382276|DMRT1	REV__ENSG00000137090|ENST00000382276|DMRT1	MULTI-MSMS	OvCa99_classI_Rep5	1	640.3059692382812	2	639.808633	1277.60271	0.74123	0.00047425	-4.128	-0.0026411	-3.3868	-0.0021669	640.3073948860028	161.6	0.45648	161.6	161.36	161.82	0					14	8	2	0	0	0	0.67529	1	18951	18951		37.812	5.061	1	37496	+		6153	19433	4924	4933	7280	7280					-0.02498371212686834
EDEEMKDL	8	Unmodified	_EDEEMKDL_					0	0	0		ENSG00000111817|ENST00000644252|DSE	ENSG00000111817|ENST00000644252|DSE	ENSG00000111817|ENST00000644252|DSE	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.2789001464844	2	504.713147	1007.41174	2.132	0.0010761	0.5085	0.00025665	2.6405	0.0013327	504.7133472160557	101.13	0.62753	101.13	100.9	101.53	0					25	14	3	0	0	0	0.028476	1	11256	11256		25.574	1.0549	1	589710			6154	2856	4925	4934	7281	7281					-0.0916677579558609
EDELHTKLSD	10	Unmodified	_EDELHTKLSD_					0	0	0			REV__ENSG00000197299|ENST00000355112|BLM	REV__ENSG00000197299|ENST00000355112|BLM	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.7708740234375	2	593.78295	1185.55135	2.0899	0.0012409	-0.11173	-6.6342E-05	1.9782	0.0011746	593.7815273252801	92.699	0.50194	92.699	92.343	92.845	0					14	11	2	0	0	0	0.026782	1	10014	10014		30.318	0	1	513780	+		6155	22909	4926	4935	7282	7282					-0.03400695186701341
EDELKRGRA	9	Unmodified	_EDELKRGRA_					0	0	0			REV__ENSG00000144821|ENST00000693548|MYH15	REV__ENSG00000144821|ENST00000693548|MYH15	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.7997436523438	2	537.288537	1072.56252	2.1178	0.0011379	-2.4749	-0.0013297	-0.35711	-0.00019187	537.2869691782522	76.556	0.76719	76.556	76.115	76.882	0					30	18	2	0	0	0	0.027462	1	7649	7649		34.173	11.13	1	404680	+		6156	19936	4927	4936	7283	7283					0.029141716981030186
EDELLALAR	9	Unmodified	_EDELLALAR_					0	0	0			REV__ENSG00000117868|ENST00000275418|ESYT2	REV__ENSG00000117868|ENST00000275418|ESYT2	MULTI-MSMS	OvCa9_classI_Rep3	3	515.2839965820312	2	515.282389	1028.55022	0.94124	0.00048501	-1.1969	-0.00061674	-0.25566	-0.00013174	515.2818157223961	106.61	4.2629	105.34	104.28	108.54	-1.267					165	82	5	0	0	0	0.62352	1	7572	7572		29.15	0	1	4317700	+		6157	18372	4928	4937	7284	7284					0.037091352350216766
EDELLKIIG	9	Unmodified	_EDELLKIIG_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.294189453125	2	515.294965	1028.57538	-0.12853	-6.6231E-05	-3.8814	-0.0020001	-4.0099	-0.0020663	515.2930270331328	32.772	0.83178	32.772	32.503	33.335	0					67	16	5	0	0	0	0.42676	1	1445	1445		49.442	1.7842	1	13477000			6158	4862	4929	4938	7285	7285					0.062231900375991245
EDELQKLTQ	9	Unmodified	_EDELQKLTQ_					0	0	0		nc|ENSG00000088280|Q8TDY4-3|ASAP3;ENSG00000088280|ENST00000336689|ASAP3;ENST00000478858.5_1_1:23767870-23768724:-|nuORF	nc|ENSG00000088280|Q8TDY4-3|ASAP3	nc|ENSG00000088280|Q8TDY4-3|ASAP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.7638549804688	2	552.282586	1102.55062	-0.51317	-0.00028342	-0.14338	-7.9184E-05	-0.65655	-0.0003626	552.2824760082622	61.316	0.4727	61.316	61.028	61.501	0					15	9	2	0	0	0	0.027462	1	5366	5366		24.519	0	1	520290			6159	1786	4930	4939	7286	7286					0.0034451016424554837
EDELQKLTQ	9	Unmodified	_EDELQKLTQ_					0	0	0		nc|ENSG00000088280|Q8TDY4-3|ASAP3;ENSG00000088280|ENST00000336689|ASAP3;ENST00000478858.5_1_1:23767870-23768724:-|nuORF	nc|ENSG00000088280|Q8TDY4-3|ASAP3	nc|ENSG00000088280|Q8TDY4-3|ASAP3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	552.282586	1102.55062	0.35925	0.00019841	-0.37247	-0.00020571	-0.013223	-7.3027E-06	552.2823904774401	64.346	0.52641	61.621	61.337	61.864	-2.7246	0.14698	-0.00010639	NaN	31.53	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28235			6160	1786	4930	4939							0.0034451016424554837
EDELQKLTQ	9	Unmodified	_EDELQKLTQ_					0	0	0		nc|ENSG00000088280|Q8TDY4-3|ASAP3;ENSG00000088280|ENST00000336689|ASAP3;ENST00000478858.5_1_1:23767870-23768724:-|nuORF	nc|ENSG00000088280|Q8TDY4-3|ASAP3	nc|ENSG00000088280|Q8TDY4-3|ASAP3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	552.282586	1102.55062	0.097113	5.3634E-05	-0.27218	-0.00015032	-0.17507	-9.6686E-05	552.2824588247233	64.97	0.6288	61.485	61.26	61.889	-3.4854	0.010575	4.3919E-06	NaN	31.53	31	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196970			6161	1786	4930	4939							0.0034451016424554837
EDENTIAIKI	10	Unmodified	_EDENTIAIKI_					0	0	0			REV__tr|A0A553STK9|A0A553STK9_NIACIYhgE/Pipdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05330PE=4SV=1	REV__tr|A0A553STK9|A0A553STK9_NIACIYhgE/Pipdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05330PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	573.3223266601562	2	573.306061	1144.59757	-0.57663	-0.00033058	-2.1724	-0.0012455	-2.7491	-0.0015761	573.8044271941046	103.28	0.42115	101.84	101.66	102.08	-1.4347					9	7	2	0	0	0	0.026568	1	7139	7139		56.632	11.61	1	8677.7	+		6162	30979	4931	4940	7287	7287					0.03105369715353845
EDEPLIVGF	9	Unmodified	_EDEPLIVGF_					0	0	0			REV__tr|A0A553SR76|A0A553SR76_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00580PE=4SV=1	REV__tr|A0A553SR76|A0A553SR76_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00580PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.8149108886719	2	509.758215	1017.50188	-0.66388	-0.00033842	-3.8632	-0.0019693	-4.5271	-0.0023077	509.75417933571384	74.92	0.30608	72.948	72.796	73.102	-1.9711					6	5	2	0	0	0	0.027462	1	6165	6165		31.955	11.473	1	8436.9	+		6163	30699	4932	4941	7288	7288					-0.006173584048497105
EDEQEQGTSA	10	Unmodified	_EDEQEQGTSA_					0	0	0		nc|ENSG00000173575|O14647-2|CHD2;ENSG00000173575|ENST00000394196|CHD2;nc|ENSG00000173575|O14647-3|CHD2	nc|ENSG00000173575|O14647-2|CHD2	nc|ENSG00000173575|O14647-2|CHD2	MULTI-MSMS	OvCa99_classI_Rep5	1	547.2211303710938	2	547.21764	1092.42073	0.95819	0.00052434	3.0892	0.0016905	4.0474	0.0022148	547.2192982413382	150.6	0.40034	150.6	150.34	150.74	0					11	7	2	0	0	0	0.69073	1	17632	17632		31.53	2.3598	1	25260			6164	7391	4933	4942	7289	7289					-0.12178710905527623
EDEQERPL	8	Unmodified	_EDEQERPL_					0	0	0		ENSG00000150764|ENST00000440460|DIXDC1;nc|ENSG00000150764|Q155Q3-2|DIXDC1	ENSG00000150764|ENST00000440460|DIXDC1	ENSG00000150764|ENST00000440460|DIXDC1	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.7977600097656	2	508.238178	1014.4618	0.16005	8.1345E-05	-0.78268	-0.00039779	-0.62263	-0.00031644	508.237675243307	110.51	1.6968	109.36	108.61	110.31	-1.1444					53	32	3	0	0	0	0.028476	1	8052	8052		53.351	0	1	91887			6165	5518	4934	4943	7290	7290					-0.04484905075435108
EDERNLFI	8	Unmodified	_EDERNLFI_					0	0	0		ENST00000366983.5_1_1:212792597-212792894:+|nuORF;ENST00000464547.5_1_1:212792437-212792894:+|nuORF;nc|ENSG00000162772|P18847-5|ATF3;ENSG00000162772|ENST00000341491|ATF3	ENST00000366983.5_1_1:212792597-212792894:+|nuORF	ENST00000366983.5_1_1:212792597-212792894:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.3257446289062	2	518.258914	1034.50327	-1.0442	-0.00054117	4.2058	0.0021797	3.1616	0.0016385	518.2609565118714	70.988	1.0174	67.531	67.299	68.317	-3.4563					33	20	2	0	0	0	0.028476	1	5384	5384		35.618	0	1	104860			6166	6231	4935	4944	7291	7291					-0.012597243161053484
EDERNLFI	8	Unmodified	_EDERNLFI_					0	0	0		ENST00000366983.5_1_1:212792597-212792894:+|nuORF;ENST00000464547.5_1_1:212792437-212792894:+|nuORF;nc|ENSG00000162772|P18847-5|ATF3;ENSG00000162772|ENST00000341491|ATF3	ENST00000366983.5_1_1:212792597-212792894:+|nuORF	ENST00000366983.5_1_1:212792597-212792894:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	518.258914	1034.50327	0.13029	6.7521E-05	2.5775	0.0013358	2.7078	0.0014033	518.2600585842183	70.045	0.60327	67.474	67.262	67.866	-2.5707	-0.028466	-0.0012608	NaN	27.882	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19141			6167	6231	4935	4944							-0.012597243161053484
EDESFNILSD	10	Unmodified	_EDESFNILSD_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-SECPEP	OvCa9_classI_Rep3	3	584.35595703125	2	584.753858	1167.49316	-4.7585	-0.0027825	2.9004	0.001696	-1.8581	-0.0010865	584.7554833041618	146.01	0.59512	145.05	144.85	145.44	-0.95947					18	11	2	0	0	0	0.02706	1	12230	12230		23.523	3.5259	1	13158	+		6168	17095	4936	4945	7292	7292					-0.08388376831999267
EDEVKEEEL	9	Unmodified	_EDEVKEEEL_					0	0	0			REV__tr|A0A553SK88|A0A553SK88_NIACI3-isopropylmalatedehydratasesmallsubunitOS=NialliacirculansOX=1397GN=leuDPE=3SV=1	REV__tr|A0A553SK88|A0A553SK88_NIACI3-isopropylmalatedehydratasesmallsubunitOS=NialliacirculansOX=1397GN=leuDPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	559.3338623046875	2	560.256234	1118.49791	0.092809	5.1997E-05	-1.9264	-0.0010793	-1.8336	-0.0010273	560.2552296131399	106.06	0.31366	104.71	104.56	104.87	-1.3482					8	5	2	0	0	0	0.027418	1	7456	7456		62.107	23.354	1	8607.1	+		6169	30096	4937	4946	7293	7293					-0.05659492689233048
EDFETLSTTE	10	Unmodified	_EDFETLSTTE_					0	0	0		ENSG00000205838|ENST00000505624|TTC23L;nc|ENSG00000205838|Q6PF05-3|TTC23L	ENSG00000205838|ENST00000505624|TTC23L	ENSG00000205838|ENST00000505624|TTC23L	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.803466796875	2	586.253691	1170.49283	1.1057	0.00064824	-3.9988	-0.0023443	-2.8931	-0.0016961	586.2515689717145	109.77	0.49176	109.77	109.5	110	0					23	10	3	0	0	0	0.026956	1	12446	12446		34.173	0	1	248380			6170	9088	4938	4947	7294	7294					-0.08559796551867294
EDFFRNSI	8	Unmodified	_EDFFRNSI_					0	0	0		nc|ENSG00000243244|Q9Y6Q2-3|STON1;nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;nc|ENSG00000242441|Q9UNN4-2|GTF2A1L;ENSG00000242441|ENST00000403751|GTF2A1L	nc|ENSG00000243244|Q9Y6Q2-3|STON1	nc|ENSG00000243244|Q9Y6Q2-3|STON1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.2677001953125	2	514.245806	1026.47706	0.57303	0.00029468	1.2097	0.00062206	1.7827	0.00091674	514.2460591780552	84.436	0.4146	81.774	81.594	82.009	-2.6629					12	8	2	0	0	0	0.028476	1	7084	7084		29.15	0	1	14512			6171	1397	4939	4948	7295	7295					-0.03511993487563814
EDFIKKQIE	9	Unmodified	_EDFIKKQIE_					0	0	0		ENSG00000135972|ENST00000258455|MRPS9	ENSG00000135972|ENST00000258455|MRPS9	ENSG00000135972|ENST00000258455|MRPS9	MULTI-MSMS	OvCa99_classI_Rep5	1	575.3124389648438	2	575.311146	1148.60774	1.8602	0.0010702	-0.30294	-0.00017428	1.5573	0.00089591	575.3111705191805	93.844	0.67476	93.844	93.673	94.348	0					25	15	2	0	0	0	0.094616	1	10199	10199		98.629	2.8142	1	1744900			6172	4441	4940	4949	7296	7296					0.03937977440614304
EDFLRLPLE	9	Unmodified	_EDFLRLPLE_					0	0	0		KLHL26|p.G315Rfs*20|1|0.47|ENSG00000167487|chr19:18668340-18668341|GG/-|frameshift_variant;ENSG00000167487|ENST00000300976|KLHL26	KLHL26|p.G315Rfs*20|1|0.47|ENSG00000167487|chr19:18668340-18668341|GG/-|frameshift_variant	KLHL26|p.G315Rfs*20|1|0.47|ENSG00000167487|chr19:18668340-18668341|GG/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.7896728515625	2	566.305864	1130.59717	-0.37352	-0.00021153	-0.74097	-0.00041961	-1.1145	-0.00063114	566.3052178724286	95.557	1.3644	93.088	92.711	94.075	-2.4685					64	26	4	0	0	0	0.027432	1	8435	8435		67.494	17.958	1	382750			6173	6793	4941	4950	7297	7297					0.03709994786186144
EDFLTIMS	8	Unmodified	_EDFLTIMS_					0	0	0		nc|ENSG00000088992|Q96BS2-2|TESC;nc|ENSG00000088992|Q96BS2-3|TESC;ENSG00000088992|ENST00000335209|TESC	nc|ENSG00000088992|Q96BS2-2|TESC	nc|ENSG00000088992|Q96BS2-2|TESC	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.8094787597656	2	478.225694	954.436834	-0.33511	-0.00016026	4.0201	0.0019225	3.685	0.0017623	478.227668233994	55.561	0.99305	55.561	54.98	55.973	0					28	23	2	0	0	0	0.028476	1	4610	4610		33.516	13.034	1	255040			6174	1802	4942	4951	7298	7298					-0.04220676202362483
EDFMALFPSV	10	Unmodified	_EDFMALFPSV_					0	0	0		GALNT10|p.Y199F|1|0.04|ENSG00000164574|chr5:154376304-154376304|A/T|missense_variant	GALNT10|p.Y199F|1|0.04|ENSG00000164574|chr5:154376304-154376304|A/T|missense_variant	GALNT10|p.Y199F|1|0.04|ENSG00000164574|chr5:154376304-154376304|A/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	578.2903442382812	2	578.273175	1154.5318	-7.0225	-0.0040609	-2.1804	-0.0012609	-9.2029	-0.0053218	578.2710502330042	160.65	0.26709	159.04	158.93	159.2	-1.6101					6	4	2	0	0	0	0.026734	1	15880	15880		56.721	16.148	1	8060.3			6175	14338	4943	4952	7299	7299					-0.03928742731204693
EDFNLVLVI	9	Unmodified	_EDFNLVLVI_					0	0	0		tr|A0A7D6VUW8|A0A7D6VUW8_9CLOTROKfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08660PE=3SV=1	tr|A0A7D6VUW8|A0A7D6VUW8_9CLOTROKfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08660PE=3SV=1	tr|A0A7D6VUW8|A0A7D6VUW8_9CLOTROKfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08660PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	531.3031005859375	2	531.297507	1060.58046	2.1203	0.0011265	-4.3365	-0.002304	-2.2162	-0.0011775	531.2951648948178	82.779	1.2348	82.779	82.394	83.629	0					64	26	3	0	0	0	0.047062	1	8572	8572		120.62	5.162	1	14817000			6176	35201	4944	4953	7300	7300					0.05259493900234702
EDFRQGSET	9	Unmodified	_EDFRQGSET_					0	0	0		nc|ENSG00000111860|Q5SZL2-3|CEP85L;nc|ENSG00000111860|Q5SZL2-5|CEP85L;nc|ENSG00000111860|Q5SZL2-2|CEP85L;ENSG00000111860|ENST00000368491|CEP85L;nc|ENSG00000111860|Q5SZL2-4|CEP85L;ENST00000483035.5_1_6:118886676-118973579:-|nuORF	nc|ENSG00000111860|Q5SZL2-3|CEP85L	nc|ENSG00000111860|Q5SZL2-3|CEP85L	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.7998657226562	2	534.73326	1067.45197	2.9629	0.0015844	3.2731	0.0017502	6.236	0.0033346	534.7346803184947	87.956	0.33533	87.956	87.794	88.13	0					16	7	3	0	0	0	0.027462	1	9356	9356		39.253	13.679	1	247760			6177	2859	4945	4954	7301	7301					-0.07906093080805476
EDFRSEVK	8	Unmodified	_EDFRSEVK_					0	0	0			REV__COL6A3|p.K1001Nfs*34|1|0.23|ENSG00000163359|chr2:237376800-237376839|TTTTAAGAGATTCACTATCTGTGGATGAAGATCTCCAATC/-|frameshift_variant	REV__COL6A3|p.K1001Nfs*34|1|0.23|ENSG00000163359|chr2:237376800-237376839|TTTTAAGAGATTCACTATCTGTGGATGAAGATCTCCAATC/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.77044677734375	2	505.251089	1008.48762	0.69597	0.00035164	0.14729	7.4419E-05	0.84326	0.00042606	505.2526994684867	81.408	0.32608	81.408	81.206	81.532	0					12	7	3	0	0	0	0.028476	1	8371	8371		71.296	17.944	1	141150	+		6178	16165	4946	4955	7302	7302					-0.016280108331329757
EDFVDEFKK	9	Unmodified	_EDFVDEFKK_					0	0	0			REV__ENSG00000180488|ENST00000370791|MIGA1	REV__ENSG00000180488|ENST00000370791|MIGA1	MULTI-MSMS	OvCa99_classI_Rep5	1	579.27978515625	2	578.779679	1155.5448	0.36003	0.00020838	-1.0387	-0.00060116	-0.67865	-0.00039279	578.7797133818774	159.47	0.87289	159.47	159.28	160.16	0					25	17	2	0	0	0	0.61365	1	18706	18706		30.318	4.7437	1	49669	+		6179	22177	4947	4956	7303	7303					-0.026745883474404764
EDFYGLCL	8	Unmodified	_EDFYGLCL_					0	0	0			REV__tr|A0A553SHQ2|A0A553SHQ2_NIACINitroreductasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13405PE=4SV=1	REV__tr|A0A553SHQ2|A0A553SHQ2_NIACINitroreductasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13405PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	480.2142333984375	2	480.212586	958.410619	0.0824	3.957E-05	3.6073	0.0017323	3.6897	0.0017718	480.21418147618385	111.38	1.4293	111.24	110.73	112.16	-0.13961					75	28	4	0	0	0	0.74361	1	10513	10513		29.842	1.5873	1	270160	+		6180	29825	4948	4957	7304	7304					-0.07024945373848368
EDGALKKQVI	10	Unmodified	_EDGALKKQVI_					0	0	0			REV__ENSG00000163736|ENST00000296028|PPBP	REV__ENSG00000163736|ENST00000296028|PPBP	MULTI-SECPEP	OvCa9_classI_Rep3	3	550.327392578125	2	550.819138	1099.62372	-1.556	-0.00085706	0.81778	0.00045045	-0.7382	-0.00040662	550.8199578474961	86.722	0.45356	84.546	84.38	84.834	-2.1768					19	8	3	0	0	0	0.026867	1	5155	5155		51.193	17.271	1	35958	+		6181	20881	4949	4958	7305	7305					0.07789683677515313
EDGGGGGG	8	Unmodified	_EDGGGGGG_					0	0	0		MEX3A|p.A244Qfs*234|1|0.49|ENSG00000254726|chr1:156077407-156077407|C/-|frameshift_variant;ZNF839|p.E321Gfs*58|1|0.23|ENSG00000022976|chr14:102331740-102331740|A/-|frameshift_variant;ENSG00000254726|ENST00000532414|MEX3A;ENSG00000022976|ENST00000442396|ZNF839;ENSG00000121871|ENST00000475390|SLITRK3	REV__nc|ENSG00000137834|O43541-4|SMAD6	REV__nc|ENSG00000137834|O43541-4|SMAD6	MULTI-SECPEP	OvCa99_classI_Rep5	1	604.804443359375	1	605.21616	604.208883	2.1953	0.0013286	2.9474	0.0017838	5.1427	0.0031124	605.2191045901844	92.978	0.24822	92.978	92.845	93.093	0					6	5	2	0	0	0	0.028476	1	10067	10067		9.4706	0	1	114110			6182	1033	4950	4959	7306	7306					-0.10905293015173356
EDGGSPVYSL	10	Unmodified	_EDGGSPVYSL_					0	0	0		ENSG00000063127|ENST00000335875|SLC6A16;nc|ENSG00000063127|Q9GZN6-2|SLC6A16	ENSG00000063127|ENST00000335875|SLC6A16	ENSG00000063127|ENST00000335875|SLC6A16	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.7935180664062	2	512.235104	1022.45566	0.16876	8.6447E-05	3.8593	0.0019768	4.028	0.0020633	512.2363904646357	60.451	1.2438	57.021	56.7	57.944	-3.43					44	24	2	0	0	0	0.026665	1	4085	4085		42.396	0	1	587510			6183	1284	4951	4960	7307	7307					-0.05467423306959063
EDGHFNIQ	8	Unmodified	_EDGHFNIQ_					0	0	0			REV__ENSG00000139344|ENST00000266736|AMDHD1	REV__ENSG00000139344|ENST00000266736|AMDHD1	MULTI-MSMS	OvCa9_classI_Rep2	2	480.2149353027344	2	480.214506	958.414459	0.0824	3.957E-05	-0.39078	-0.00018766	-0.30838	-0.00014809	480.21418147618385	111.38	1.4293	111.24	110.73	112.16	-0.13961					75	28	4	0	0	0	0.68714	1	10492	10492		45.952	1.4209	1	270160	+		6184	19603	4952	4961	7308	7308					-0.0664113955576795
EDGIQPTLD	9	Unmodified	_EDGIQPTLD_					0	0	0		tr|A0A553SM35|A0A553SM35_NIACIExtracellularsolute-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_21760PE=4SV=1	tr|A0A553SM35|A0A553SM35_NIACIExtracellularsolute-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_21760PE=4SV=1	tr|A0A553SM35|A0A553SM35_NIACIExtracellularsolute-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_21760PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.7572326660156	2	494.235104	986.455655	-0.50829	-0.00025121	2.7979	0.0013828	2.2896	0.0011316	494.2356655263426	48.963	0.82697	48.963	48.204	49.031	0					23	18	2	0	0	0	0.027461	1	3616	3616		58.782	11.125	1	44398			6185	33795	4953	4962	7309	7309					-0.03811423306956385
EDGKKPVQN	9	Unmodified	_EDGKKPVQN_					0	0	0		L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|81|2|sense	L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|81|2|sense	L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|81|2|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7672424316406	2	507.764363	1013.51417	3.7041	0.0018808	0.31932	0.00016214	4.0235	0.002043	507.76435878537296	132.17	1.6916	130.67	129.94	131.63	-1.5015					93	33	4	0	0	0	0.53957	1	12675	12675		38.806	0	1	152800			6186	14743	4954	4963	7310	7310					0.007956780581935163
EDGLFEMCR	9	Unmodified	_EDGLFEMCR_					0	0	0			REV__ENST00000552554.1_1_12:96066451-96066841:+|nuORF	REV__ENST00000552554.1_1_12:96066451-96066841:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.8036499023438	2	550.230984	1098.44742	-0.069137	-3.8041E-05	2.5901	0.0014252	2.521	0.0013871	550.2322850008023	64.944	0.28435	64.944	64.75	65.034	0					10	6	2	0	0	0	0.027462	1	5939	5939		6.7355	0	1	156160	+		6187	27498	4955	4964	7311	7311					-0.09787016819586825
EDGLFKKLSL	10	Unmodified	_EDGLFKKLSL_					0	0	0			REV__tr|A0A7D6ZP03|A0A7D6ZP03_9CLOTMethionineABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18340PE=4SV=1	REV__tr|A0A7D6ZP03|A0A7D6ZP03_9CLOTMethionineABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18340PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.3104248046875	2	575.329339	1148.64412	-0.84812	-0.00048795	1.594	0.00091708	0.74588	0.00042912	575.3296516237017	98.987	0.71608	97.302	97.113	97.829	-1.685					26	13	3	0	0	0	0.027632	1	6683	6683		87.696	0	1	36887	+		6188	32127	4956	4965	7312	7312					0.07574854337326542
EDGRGSNLW	9	Unmodified	_EDGRGSNLW_					0	0	0			REV__nc|ENSG00000087274|P35611-5|ADD1	REV__nc|ENSG00000087274|P35611-5|ADD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.287353515625	2	517.238513	1032.46247	-1.3477	-0.00069706	1.4116	0.00073015	0.063971	3.3088E-05	517.2390638488089	34.375	0.89405	34.375	34.017	34.911	0					43	18	4	0	0	0	0.027455	1	1708	1708		34.173	0	1	757750	+		6189	17163	4957	4966	7313	7313					-0.0524606563569705
EDGRPRRG	8	Unmodified	_EDGRPRRG_					0	0	0			REV__ENST00000449549.3_1_16:67184143-67184437:-|nuORF	REV__ENST00000449549.3_1_16:67184143-67184437:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	471.7480163574219	2	471.746839	941.479125	-0.87596	-0.00041323	3.3673	0.0015885	2.4913	0.0011753	471.7482986041781	116.14	1.3366	116.03	115.69	117.02	-0.11777					59	26	3	0	0	0	0.745	1	11081	11081		29.15	2.3535	1	260110	+		6190	25948	4958	4967	7314	7314					0.006044800409085838
EDHDECQDL	9	Unmodified	_EDHDECQDL_					0	0	0		ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.7801513671875	2	552.200935	1102.38732	2.5581	0.0014126	-0.010316	-5.6962E-06	2.5478	0.0014069	552.200831350315	98.935	0.59684	98.935	98.764	99.361	0					20	14	2	0	0	0	0.027462	1	10913	10913		23.523	2.5758	1	789880			6191	3379	4959	4968	7315	7315					-0.1597803594911511
EDHILIIPV	9	Unmodified	_EDHILIIPV_					0	0	0		ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant;ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-4|ADGRV1;nc|ENSG00000164199|Q8WXG9-3|ADGRV1	ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.7846069335938	2	524.8055	1047.59645	-1.3284	-0.00069713	0.673	0.00035319	-0.65537	-0.00034394	524.8056267324877	100.9	1.1937	99.291	99.094	100.29	-1.6053					36	22	2	0	0	0	0.027462	1	6977	6977		18.324	0.95945	1	38103			6192	42	4960	4969	7316	7316					0.07455200137133033
EDHKQLFKK	9	Unmodified	_EDHKQLFKK_					0	0	0			REV__ENSG00000269964|ENST00000684080|MEI4	REV__ENSG00000269964|ENST00000684080|MEI4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	586.7889404296875	2	586.824755	1171.63496	-0.67876	-0.00039831	0.55628	0.00032644	-0.12248	-7.1873E-05	586.8242173134273	62.61	0.53565	59.152	58.962	59.498	-3.4577					13	10	2	0	0	0	0.027462	1	4387	4387		37.159	19.794	1	28395	+		6193	23603	4961	4970	7317	7317					0.05600505771644748
EDHPVPEVV	9	Unmodified	_EDHPVPEVV_					0	0	0			REV__nc|ENSG00000130234|Q9BYF1-3|ACE2	REV__nc|ENSG00000130234|Q9BYF1-3|ACE2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.288818359375	2	510.753464	1019.49238	0.63723	0.00032547	-0.022303	-1.1391E-05	0.61493	0.00031408	510.7528933253363	96.671	0.30157	94.246	94.118	94.42	-2.4256					8	5	2	0	0	0	0.027462	1	8544	8544		37.159	26.894	1	60409	+		6194	18933	4962	4971	7318	7318					-0.016591266903787982
EDHSALVPPVI	11	Unmodified	_EDHSALVPPVI_					0	0	0		nc|ENSG00000151276|Q96QZ7-7|MAGI1;nc|ENSG00000151276|Q96QZ7-6|MAGI1;ENSG00000151276|ENST00000402939|MAGI1;nc|ENSG00000151276|Q96QZ7|MAGI1;nc|ENSG00000151276|Q96QZ7-4|MAGI1;nc|ENSG00000151276|Q96QZ7-3|MAGI1;nc|ENSG00000151276|Q96QZ7-5|MAGI1;MAGI1|p.P789Tfs*5|1|0.22|ENSG00000151276|chr3:65391193-65391194|-/T|frameshift_variant	nc|ENSG00000151276|Q96QZ7-7|MAGI1	nc|ENSG00000151276|Q96QZ7-7|MAGI1	MULTI-MSMS	OvCa9_classI_Rep2	2	588.815673828125	2	588.816596	1175.61864	0.80845	0.00047603	-0.88791	-0.00052281	-0.079461	-4.6788E-05	588.8159508434318	128.23	0.78979	128.01	127.74	128.53	-0.22696					46	15	4	0	0	0	0.43234	1	12581	12581		58.782	19.76	1	167000			6195	5545	4963	4972	7319	7319					0.037853798148944406
EDHSALVPPVI	11	Unmodified	_EDHSALVPPVI_					0	0	0		nc|ENSG00000151276|Q96QZ7-7|MAGI1;nc|ENSG00000151276|Q96QZ7-6|MAGI1;ENSG00000151276|ENST00000402939|MAGI1;nc|ENSG00000151276|Q96QZ7|MAGI1;nc|ENSG00000151276|Q96QZ7-4|MAGI1;nc|ENSG00000151276|Q96QZ7-3|MAGI1;nc|ENSG00000151276|Q96QZ7-5|MAGI1;MAGI1|p.P789Tfs*5|1|0.22|ENSG00000151276|chr3:65391193-65391194|-/T|frameshift_variant	nc|ENSG00000151276|Q96QZ7-7|MAGI1	nc|ENSG00000151276|Q96QZ7-7|MAGI1	MULTI-MSMS	OvCa9_classI_Rep3	3	588.8164672851562	2	588.816596	1175.61864	-0.63539	-0.00037413	0.48748	0.00028704	-0.1479	-8.7089E-05	588.8167831837943	129.05	0.98856	127.95	127.56	128.55	-1.1011					50	19	4	0	0	0	0.68684	1	10189	10189		34.173	1.3601	1	135200			6196	5545	4963	4972	7320	7320					0.037853798148944406
EDIDKEENL	9	Unmodified	_EDIDKEENL_					0	0	0		tr|A0A7D6VTG0|A0A7D6VTG0_9CLOTTranslationinitiationfactorIF-2OS=ClostridiumintestinaleOX=36845GN=infBPE=3SV=1	tr|A0A7D6VTG0|A0A7D6VTG0_9CLOTTranslationinitiationfactorIF-2OS=ClostridiumintestinaleOX=36845GN=infBPE=3SV=1	tr|A0A7D6VTG0|A0A7D6VTG0_9CLOTTranslationinitiationfactorIF-2OS=ClostridiumintestinaleOX=36845GN=infBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.2850341796875	2	552.756401	1103.49825	0.81943	0.00045294	1.9919	0.0011011	2.8114	0.001554	552.7576142577827	110.64	0.15758	109.04	108.91	109.07	-1.6011					4	2	2	0	0	0	0.027295	1	10170	10170		74.255	15.473	1	5314.8			6197	35112	4964	4973	7321	7321					-0.049360729693717076
EDIELHGRC	9	Unmodified	_EDIELHGRC_					0	0	0		DENND2A|p.P662Sfs*2|1|0.09|ENSG00000146966|chr7:140555690-140555691|-/C|frameshift_variant;nc|ENSG00000146966|Q9ULE3-2|DENND2A;DENND2A|p.L884Sfs*29|1|0.23|ENSG00000146966|chr7:140523322-140523323|-/AAGTGATCTGCCCACCTCGGCCTCCCAAAGTGCT|frameshift_variant;ENSG00000146966|ENST00000496613|DENND2A	DENND2A|p.P662Sfs*2|1|0.09|ENSG00000146966|chr7:140555690-140555691|-/C|frameshift_variant	DENND2A|p.P662Sfs*2|1|0.09|ENSG00000146966|chr7:140555690-140555691|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	536.2500610351562	2	536.248023	1070.48149	2.2652	0.0012147	2.0719	0.0011111	4.3372	0.0023258	536.2490458807978	120.46	1.5758	119.43	119.12	120.69	-1.0271					80	30	4	0	0	0	0.36502	1	9218	9218		55.504	6.0627	1	464170			6198	727	4965	4974	7322	7322					-0.05092852336292708
EDIEQSIKI	9	Unmodified	_EDIEQSIKI_					0	0	0			REV__tr|A0A553SQP4|A0A553SQP4_NIACIAspartyl-phosphatephosphataseSpo0EfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07665PE=4SV=1	REV__tr|A0A553SQP4|A0A553SQP4_NIACIAspartyl-phosphatephosphataseSpo0EfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07665PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.8327026367188	2	537.787504	1073.56045	-1.1104	-0.00059718	0.51279	0.00027577	-0.59765	-0.00032141	537.7878592054028	94.3	0.88961	91.832	91.571	92.46	-2.4685					31	17	3	0	0	0	0.027185	1	8268	8268		93.195	0	1	110750	+		6199	30652	4966	4975	7323	7323					0.02661698169617921
EDIGKLLIKV	10	Unmodified	_EDIGKLLIKV_					0	0	0		tr|A0A7D6ZKC4|A0A7D6ZKC4_9CLOTLacIfamilyDNA-bindingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13805PE=4SV=1	tr|A0A7D6ZKC4|A0A7D6ZKC4_9CLOTLacIfamilyDNA-bindingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13805PE=4SV=1	tr|A0A7D6ZKC4|A0A7D6ZKC4_9CLOTLacIfamilyDNA-bindingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13805PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	564.30908203125	2	564.355357	1126.69616	-1.0879	-0.00061394	1.0133	0.00057185	-0.074585	-4.2092E-05	564.3559085155566	117.2	1.0406	116.17	115.6	116.64	-1.0324					38	20	3	0	0	0	0.026931	1	8761	8761		30.318	14.676	1	427190			6200	35663	4967	4976	7324	7324					0.13788017751062398
EDIHEGLN	8	Unmodified	_EDIHEGLN_					0	0	0			REV__ENSG00000135828|ENST00000367559|RNASEL	REV__ENSG00000135828|ENST00000367559|RNASEL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.2355041503906	2	463.714339	925.414125	-1.5836	-0.00073432	2.6272	0.0012183	1.0437	0.00048397	463.7154572845678	72.937	0.58074	69.541	69.349	69.93	-3.3961					17	11	2	0	0	0	0.028476	1	5662	5662		12.207	0	1	32129	+		6201	19324	4968	4977	7325	7325					-0.051565592756105616
EDIIEALISL	10	Unmodified	_EDIIEALISL_					0	0	0		ENSG00000186943|ENST00000335040|OR13C8	ENSG00000186943|ENST00000335040|OR13C8	ENSG00000186943|ENST00000335040|OR13C8	MULTI-SECPEP	OvCa9_classI_Rep3	3	558.2966918945312	2	558.313354	1114.61216	0.48118	0.00026865	-0.41008	-0.00022895	0.071105	3.9699E-05	558.3131394404107	110.88	1.0055	109.78	109.49	110.5	-1.1038					32	19	2	0	0	0	0.026802	1	8024	8024		26.693	0	1	51293			6202	8376	4969	4978	7326	7326					0.05943441863519183
EDIIEALISL	10	Unmodified	_EDIIEALISL_					0	0	0		ENSG00000186943|ENST00000335040|OR13C8	ENSG00000186943|ENST00000335040|OR13C8	ENSG00000186943|ENST00000335040|OR13C8	MULTI-MATCH	OvCa9_classI_Rep2	2		2	558.313354	1114.61216	0.64566	0.00036048	-0.2919	-0.00016297	0.35376	0.00019751	558.3131986168554	110.05	0.93893	109.88	109.66	110.6	-0.17236	0.042354	0.00058321	NaN	26.693	33	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57896			6203	8376	4969	4978							0.05943441863519183
EDIIKYPK	8	Unmodified	_EDIIKYPK_					0	0	0		tr|A0A7D6ZJM6|A0A7D6ZJM6_9CLOTAspartatecarbamoyltransferaseOS=ClostridiumintestinaleOX=36845GN=pyrBPE=3SV=1	tr|A0A7D6ZJM6|A0A7D6ZJM6_9CLOTAspartatecarbamoyltransferaseOS=ClostridiumintestinaleOX=36845GN=pyrBPE=3SV=1	tr|A0A7D6ZJM6|A0A7D6ZJM6_9CLOTAspartatecarbamoyltransferaseOS=ClostridiumintestinaleOX=36845GN=pyrBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	503.2832946777344	2	503.2844	1004.55425	-2.3544	-0.0011849	-0.90657	-0.00045626	-3.2609	-0.0016412	503.2837317952752	37.887	0.88826	35.178	34.977	35.865	-2.7097					37	17	3	0	0	0	0.65062	1	1735	1735		53.351	0	1	84026			6204	35647	4970	4979	7327	7327					0.0521522472874949
EDIIRKAL	8	Unmodified	_EDIIRKAL_					0	0	0		nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;ENST00000464381.5_1_17:15935612-15961439:-|nuORF;ENST00000470782.5_1_17:15935612-15971511:-|nuORF	nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	MULTI-MSMS	OvCa9_classI_Rep3	3	479.28863525390625	2	479.290017	956.565481	-0.33467	-0.0001604	0.85312	0.00040889	0.51845	0.00024849	479.29029988395797	117.55	0.94048	116.51	116.24	117.18	-1.0324					43	18	3	0	0	0	0.56113	1	8852	8852		71.378	0	1	249320			6205	4891	4971	4980	7328	7328					0.0854604682289164
EDIKLFSEM	9	Unmodified	_EDIKLFSEM_					0	0	0		tr|A0A7D6ZRY3|A0A7D6ZRY3_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13965PE=3SV=1	tr|A0A7D6ZRY3|A0A7D6ZRY3_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13965PE=3SV=1	tr|A0A7D6ZRY3|A0A7D6ZRY3_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13965PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	556.2715454101562	2	556.270632	1110.52671	1.3401	0.00074546	-0.2731	-0.00015191	1.067	0.00059355	556.2703298502786	61.128	1.3911	58.06	57.54	58.931	-3.0685					61	39	2	0	0	0	0.63422	1	2105	2105		27.882	0	1	29839			6206	35726	4972	4981	7329	7329					-0.024130465938014822
EDILERNPL	9	Unmodified	_EDILERNPL_					0	0	0		GON4L|p.D1620N|1|0.19|ENSG00000116580|chr1:155762243-155762243|C/T|missense_variant	GON4L|p.D1620N|1|0.19|ENSG00000116580|chr1:155762243-155762243|C/T|missense_variant	GON4L|p.D1620N|1|0.19|ENSG00000116580|chr1:155762243-155762243|C/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	550.3275146484375	2	549.793121	1097.57169	-1.5453	-0.00084958	1.5349	0.00084386	-0.010403	-5.7196E-06	549.7950221051628	84.794	0.14951	82.533	82.457	82.607	-2.261					4	2	2	0	0	0	0.027453	1	4932	4932		54.776	25.627	1	5507.9			6207	14346	4973	4982	7330	7330					0.02680520263766084
EDIQLDYKN	9	Unmodified	_EDIQLDYKN_					0	0	0		ENST00000473097.5_1_1:1288733-1289815:-|nuORF;ENSG00000162576|ENST00000309212|MXRA8;nc|ENSG00000162576|Q9BRK3-4|MXRA8;nc|ENSG00000162576|Q9BRK3-3|MXRA8	ENST00000473097.5_1_1:1288733-1289815:-|nuORF;ENSG00000162576|ENST00000309212|MXRA8	ENSG00000162576|ENST00000309212|MXRA8	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.8463745117188	2	569.274761	1136.53497	-0.65216	-0.00037126	-2.9861	-0.0016999	-3.6382	-0.0020712	569.773771264696	59.673	0.50185	59.673	59.377	59.879	0					21	12	3	0	0	0	0.027462	1	5166	5166		26.693	0	1	238350			6208	6195;12404	4974	4983	7331	7331					-0.027837763527941206
EDISAREIVAF	11	Unmodified	_EDISAREIVAF_					0	0	0			REV__nc|ENSG00000170734|Q9Y253-2|POLH	REV__nc|ENSG00000170734|Q9Y253-2|POLH	MULTI-SECPEP	OvCa99_classI_Rep5	1	417.20916748046875	3	417.218949	1248.63502	0.26419	0.00011022	3.936	0.0016422	4.2002	0.0017524	417.2205981586914	42.824	0.85448	42.824	42.624	43.478	0					31	19	3	0	0	0	0.025818	1	2844	2844		17.833	0	1	149450	+		6209	21558	4975	4984	7332	7332					0.020644609809778558
EDITLVAVH	9	Unmodified	_EDITLVAVH_					0	0	0			REV__nc|ENSG00000258597|P20848|SERPINA2	REV__nc|ENSG00000258597|P20848|SERPINA2	MULTI-MSMS	OvCa9_classI_Rep2	2	498.7712707519531	2	498.771657	995.528761	-0.57303	-0.00028581	-0.65837	-0.00032838	-1.2314	-0.00061419	498.77120513452377	136.26	1.1223	136.03	135.72	136.84	-0.22696					46	22	3	0	0	0	0.64339	1	13579	13579		26.796	2.2769	1	27028	+		6210	29180	4976	4985	7333	7333					0.03081750206331435
EDITMKTQI	9	Unmodified	_EDITMKTQI_					0	0	0			REV__tr|A0A553SHX6|A0A553SHX6_NIACINADHoxidaseOS=NialliacirculansOX=1397GN=CEQ21_13800PE=3SV=1	REV__tr|A0A553SHX6|A0A553SHX6_NIACINADHoxidaseOS=NialliacirculansOX=1397GN=CEQ21_13800PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.3137817382812	2	539.776082	1077.53761	1.5857	0.00085592	-2.3212	-0.0012529	-0.73553	-0.00039702	539.7750798833966	118.86	0.84743	118.86	118.53	119.38	0					27	17	2	0	0	0	0.027118	1	13624	13624		74.255	12.148	1	164950	+		6211	29850	4977	4986	7334	7334					0.001943557804906959
EDIVTEQIDF	10	Unmodified	_EDIVTEQIDF_					0	0	0		nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-7|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	604.2483520507812	2	604.787701	1207.56085	1.2862	0.00077785	2.6543	0.0016053	3.9404	0.0023831	605.2927578961514	124.51	0.59752	124.51	124.15	124.74	0					15	12	2	0	0	0	0.026577	1	14342	14342		58.23	0	1	37951			6212	15118	4978	4987	7335	7335					-0.034629269011929864
EDKAKYVK	8	Unmodified	_EDKAKYVK_					0	0	0		ENSG00000082212|ENST00000321341|ME2	ENSG00000082212|ENST00000321341|ME2	ENSG00000082212|ENST00000321341|ME2	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.24981689453125	2	490.7742	979.533846	0.017851	8.7609E-06	-1.2365	-0.00060685	-1.2187	-0.00059809	490.773501825687	57.699	0.54776	57.699	57.522	58.069	0					17	12	2	0	0	0	0.028476	1	4885	4885		49.442	22.394	1	499800			6213	1673	4979	4988	7336	7336					0.04326054068940266
EDKARTFFA	9	Unmodified	_EDKARTFFA_					0	0	0		OTOS|p.M66K|1|0.14|ENSG00000178602|chr2:240139243-240139243|A/T|missense_variant	OTOS|p.M66K|1|0.14|ENSG00000178602|chr2:240139243-240139243|A/T|missense_variant	OTOS|p.M66K|1|0.14|ENSG00000178602|chr2:240139243-240139243|A/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.8511962890625	2	542.774731	1083.53491	2.3147	0.0012563	3.3736	0.0018311	5.6882	0.0030874	542.7763633903724	91.52	0.46184	91.52	91.332	91.794	0					23	10	3	0	0	0	0.027462	1	9851	9851		31.955	0	1	960820			6214	15470	4980	4989	7337	7337					-0.003517315621365924
EDKARTFFA	9	Unmodified	_EDKARTFFA_					0	0	0		OTOS|p.M66K|1|0.14|ENSG00000178602|chr2:240139243-240139243|A/T|missense_variant	OTOS|p.M66K|1|0.14|ENSG00000178602|chr2:240139243-240139243|A/T|missense_variant	OTOS|p.M66K|1|0.14|ENSG00000178602|chr2:240139243-240139243|A/T|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.774731	1083.53491	-0.39035	-0.00021187	3.6306	0.0019706	3.2402	0.0017587	542.7765378373655	93.041	0.97253	91.873	91.655	92.628	-1.168	0.13399	0.0001182	NaN	24.203	27	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44853			6215	15470	4980	4989							-0.003517315621365924
EDKARTFFA	9	Unmodified	_EDKARTFFA_					0	0	0		OTOS|p.M66K|1|0.14|ENSG00000178602|chr2:240139243-240139243|A/T|missense_variant	OTOS|p.M66K|1|0.14|ENSG00000178602|chr2:240139243-240139243|A/T|missense_variant	OTOS|p.M66K|1|0.14|ENSG00000178602|chr2:240139243-240139243|A/T|missense_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	542.774731	1083.53491	-0.77677	-0.00042161	3.5291	0.0019155	2.7523	0.0014939	542.7765497707913	93.785	0.71503	91.824	91.577	92.292	-1.9617	0.084935	7.9991E-06	NaN	24.203	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63856			6216	15470	4980	4989							-0.003517315621365924
EDKDVVLQI	9	Unmodified	_EDKDVVLQI_					0	0	0			REV__tr|A0A7D6VTU4|A0A7D6VTU4_9CLOTAspartate--tRNA(Asp/Asn)ligaseOS=ClostridiumintestinaleOX=36845GN=aspSPE=3SV=1	REV__tr|A0A7D6VTU4|A0A7D6VTU4_9CLOTAspartate--tRNA(Asp/Asn)ligaseOS=ClostridiumintestinaleOX=36845GN=aspSPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.7905883789062	2	529.790047	1057.56554	1.4935	0.00079123	0.33703	0.00017855	1.8305	0.00096978	529.790091613018	78.889	0.81128	78.889	78.54	79.352	0					40	19	3	0	0	0	0.21231	1	8010	8010		74.255	0.28031	1	3537400	+		6217	31632	4981	4990	7338	7338					0.03906002032226752
EDKEETIQK	9	Unmodified	_EDKEETIQK_					0	0	0		ENST00000471706.1_1_1:145457217-145470350:-|nuORF;ENSG00000121851|ENST00000369314|POLR3GL	ENST00000471706.1_1_1:145457217-145470350:-|nuORF	ENST00000471706.1_1_1:145457217-145470350:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.3582153320312	2	560.280043	1118.54553	0.42188	0.00023637	-0.031169	-1.7464E-05	0.39071	0.00021891	560.2797775391841	99.376	1.1757	97.05	96.743	97.919	-2.3253					40	22	3	0	0	0	0.027453	1	8848	8848		45.972	3.5761	1	100280			6218	3501	4982	4991	7339	7339					-0.0089979369838602
EDKEFVKVDS	10	Unmodified	_EDKEFVKVDS_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	598.836181640625	2	598.295693	1194.57683	0.065317	3.9079E-05	0.61683	0.00036905	0.68215	0.00040813	598.2959820470046	82.729	0.92719	80.046	79.733	80.66	-2.6829					47	18	4	0	0	0	0.026849	1	6848	6848		19.104	0	1	246290	+		6219	28942;32737	4983	4992	7340	7340					-0.012672206642719175
EDKESYTMS	9	Unmodified	_EDKESYTMS_					0	0	0			REV__nc|ENSG00000075391|Q9UJF2|RASAL2	REV__nc|ENSG00000075391|Q9UJF2|RASAL2	MULTI-MSMS	OvCa99_classI_Rep5	1	545.2258911132812	2	545.223879	1088.43321	0.63748	0.00034757	2.5652	0.0013986	3.2027	0.0017462	545.225137729692	140.44	0.95975	140.44	140.02	140.98	0					39	19	3	0	0	0	0.31747	1	16427	16427		60.972	15.02	1	413420	+		6220	16971	4984	4993	7341	7341					-0.10747390766869103
EDKGAHGPRPD	11	Unmodified	_EDKGAHGPRPD_					0	0	0		ENSG00000159208|ENST00000290363|CIART;nc|ENSG00000159208|Q8N365-2|CIART;ENST00000469255.5_1_1:150255677-150256841:+|nuORF	ENSG00000159208|ENST00000290363|CIART	ENSG00000159208|ENST00000290363|CIART	MULTI-SECPEP	OvCa9_classI_Rep4_	4	588.8140869140625	2	589.781076	1177.5476	0.06707	3.9557E-05	-0.76821	-0.00045308	-0.70114	-0.00041352	589.7805936272038	56.75	1.4699	53.405	52.668	54.138	-3.3449					56	28	3	0	0	0	0.02568	1	3707	3707		51.528	0	1	122170			6221	5993	4985	4994	7342	7342					-0.03407320169912964
EDKGNYKCAL	10	Unmodified	_EDKGNYKCAL_					0	0	0			REV__ENSG00000131828|ENST00000422285|PDHA1	REV__ENSG00000131828|ENST00000422285|PDHA1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	569.8131713867188	2	570.771331	1139.52811	-0.81507	-0.00046522	0.77607	0.00044296	-0.039002	-2.2261E-05	570.7717063968364	118.03	0.68365	116.69	116.47	117.15	-1.3444					18	12	2	0	0	0	0.026802	1	11051	11051		26.693	0	1	19273	+		6222	19036	4986	4995	7343	7343					-0.036074125050163275
EDKGNYKCAL	10	Unmodified	_EDKGNYKCAL_					0	0	0			REV__ENSG00000131828|ENST00000422285|PDHA1	REV__ENSG00000131828|ENST00000422285|PDHA1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	570.771331	1139.52811	-0.88309	-0.00050404	0.11372	6.491E-05	-0.76937	-0.00043913	570.7713091526001	117.78	0.74285	116.74	116.64	117.38	-1.0324	0.027122	-0.00022056	NaN	26.693	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16716	+		6223	19036	4986	4995							-0.036074125050163275
EDKIGPPVIVR	11	Unmodified	_EDKIGPPVIVR_					0	0	0			REV__tr|A0A7D6W103|A0A7D6W103_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01855PE=4SV=1	REV__tr|A0A7D6W103|A0A7D6W103_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01855PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	408.244873046875	3	408.243317	1221.70812	1.1026	0.00045015	-0.2235	-9.1242E-05	0.87915	0.00035891	408.2432793118589	69.083	1.7129	69.083	68.815	70.528	0					118	41	5	0	0	0	0.62666	1	6593	6593		42.243	2.9897	1	36139000	+		6224	31871	4987	4996	7344	7344					0.10613634494256985
EDKKAAIDEL	10	Unmodified	_EDKKAAIDEL_					0	0	0		tr|A0A7D6ZV40|A0A7D6ZV40_9CLOTPF03932familyproteinCutCOS=ClostridiumintestinaleOX=36845GN=cutCPE=3SV=1	tr|A0A7D6ZV40|A0A7D6ZV40_9CLOTPF03932familyproteinCutCOS=ClostridiumintestinaleOX=36845GN=cutCPE=3SV=1	tr|A0A7D6ZV40|A0A7D6ZV40_9CLOTPF03932familyproteinCutCOS=ClostridiumintestinaleOX=36845GN=cutCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	566.2971801757812	2	566.298236	1130.58192	-0.94412	-0.00053466	-0.19184	-0.00010864	-1.136	-0.00064329	566.2979066209101	99.965	2.3305	99.134	98.418	100.75	-0.83051					77	46	4	0	0	0	0.64812	1	9205	9205		36.318	2.8021	1	343040			6225	35791	4988	4997	7345	7345					0.021850831983329044
EDKKFKRKL	9	Unmodified	_EDKKFKRKL_					0	0	0		tr|A0A7D6VP52|A0A7D6VP52_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15300PE=4SV=1	tr|A0A7D6VP52|A0A7D6VP52_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15300PE=4SV=1	tr|A0A7D6VP52|A0A7D6VP52_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15300PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.798583984375	2	596.364047	1190.71354	1.9408	0.0011574	-0.85602	-0.0005105	1.0848	0.00064691	596.8641683751043	126.22	0.56718	126.22	125.99	126.56	0					17	11	2	0	0	0	0.027448	1	14597	14597		53.351	10.955	1	47346			6226	34750	4989	4998	7346	7346					0.12581358076749893
EDKKFRDVD	9	Unmodified	_EDKKFRDVD_					0	0	0			REV__ENSG00000270629|ENST00000619423|NBPF14	REV__ENSG00000270629|ENST00000619423|NBPF14	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.3111572265625	2	576.288202	1150.56185	-1.4991	-0.00086389	4.1876	0.0024132	2.6885	0.0015494	576.2906435677071	99.997	1.4815	97.672	97.16	98.641	-2.3253					100	28	6	0	0	0	0.027402	1	8882	8882		47.657	0	1	455980	+		6227	23605	4990	4999	7347	7347					-0.0074066774163839
EDKKFREI	8	Unmodified	_EDKKFREI_					0	0	0			REV__nc|ENSG00000110066|Q4FZB7-4|KMT5B	REV__nc|ENSG00000110066|Q4FZB7-4|KMT5B	MULTI-SECPEP	OvCa9_classI_Rep2	2	533.3472290039062	2	532.790381	1063.56621	-0.34152	-0.00018196	-0.50805	-0.00027068	-0.84957	-0.00045264	532.7903743002254	92.147	0.73691	90.912	90.589	91.326	-1.2355					19	13	2	0	0	0	0.028476	1	8230	8230		85.359	22.381	1	148120	+		6228	17967	4991	5000	7348	7348					0.036968414719467546
EDKKLKSV	8	Unmodified	_EDKKLKSV_					0	0	0		ENSG00000099284|ENST00000373255|MACROH2A2	ENSG00000099284|ENST00000373255|MACROH2A2	ENSG00000099284|ENST00000373255|MACROH2A2	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.7828369140625	2	473.782025	945.549496	0.95397	0.00045197	-1.484	-0.00070311	-0.53007	-0.00025114	473.7812195441536	59.91	2.0672	56.48	56.111	58.178	-3.43					93	41	3	0	0	0	0.58851	1	4102	4102		66.429	3.123	1	1554800			6229	1965	4992	5001	7349	7349					0.07454340586002672
EDKLKEAIMS	10	Unmodified	_EDKLKEAIMS_					0	0	0			REV__tr|A0A7D6ZYC6|A0A7D6ZYC6_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_01680PE=4SV=1	REV__tr|A0A7D6ZYC6|A0A7D6ZYC6_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_01680PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	582.3030395507812	2	582.302464	1162.59037	1.513	0.00088101	-1.2701	-0.00073957	0.2429	0.00014144	582.3015019309466	120.16	0.70122	120.16	119.7	120.4	0					36	16	3	0	0	0	0.53807	1	13813	13813		49.536	7.1399	1	1263200	+		6230	32364	4993	5002	7350	7350					0.015583138432930355
EDKLKMIR	8	Unmodified	_EDKLKMIR_					0	0	0		ENSG00000108953|ENST00000264335|YWHAE;nc|ENSG00000108953|P62258-2|YWHAE;YWHAE-SLC43A2|1|fusion;ENST00000489287.1_1_17:1268113-1303470:-|nuORF;ENST00000486241.1_1_17:1265194-1303470:-|nuORF;NEO1-YWHAE|1|fusion	ENSG00000108953|ENST00000264335|YWHAE;NEO1-YWHAE|1|fusion	ENSG00000108953|ENST00000264335|YWHAE	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.7704467773438	2	516.797152	1031.57975	2.4815	0.0012824	-3.1113	-0.0016079	-0.6298	-0.00032548	516.7954007397627	96.289	0.50308	96.289	96.039	96.543	0					19	11	2	0	0	0	0.028476	1	10542	10542		35.618	5.1146	1	407770			6231	2689;15425	4994	5003	7351	7351					0.06522375979534445
EDKLQQLKQL	10	Unmodified	_EDKLQQLKQL_					0	0	0			REV__ENSG00000005007|ENST00000262803|UPF1	REV__ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.9073486328125	3	414.906594	1241.69795	0.22621	9.3855E-05	-0.56495	-0.0002344	-0.33875	-0.00014055	414.9061430110886	78.667	1.4152	75.915	75.619	77.034	-2.7514					93	29	5	0	0	0	0.4826	1	6350	6350		56.632	3.0354	1	827810	+		6232	16388	4995	5004	7352	7352					0.08677026769032636
EDKLQQLKQL	10	Unmodified	_EDKLQQLKQL_					0	0	0			REV__ENSG00000005007|ENST00000262803|UPF1	REV__ENSG00000005007|ENST00000262803|UPF1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	414.906594	1241.69795	0.35722	0.00014821	0.020003	8.2992E-06	0.37722	0.00015651	414.9063475250158	77.547	1.6384	75.757	75.311	76.95	-1.7894	-0.0014312	0.00039347	NaN	56.632	108	31	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	695900	+		6233	16388	4995	5004							0.08677026769032636
EDKLQQLKQL	10	Unmodified	_EDKLQQLKQL_					0	0	0			REV__ENSG00000005007|ENST00000262803|UPF1	REV__ENSG00000005007|ENST00000262803|UPF1	MULTI-MATCH	OvCa9_classI_Rep3	3		3	414.906594	1241.69795	0.20483	8.4986E-05	-0.30069	-0.00012476	-0.095858	-3.9772E-05	414.9063928693085	77.957	1.3889	75.604	75.304	76.693	-2.3527	-0.15492	-5.6991E-06	NaN	56.632	69	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	782770	+		6234	16388	4995	5004							0.08677026769032636
EDKLQQLKQL	10	Unmodified	_EDKLQQLKQL_					0	0	0			REV__ENSG00000005007|ENST00000262803|UPF1	REV__ENSG00000005007|ENST00000262803|UPF1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		3	414.906594	1241.69795	0.22621	9.3855E-05	-0.56495	-0.0002344	-0.33875	-0.00014055	414.9061430110886	78.667	1.4152	75.915	75.619	77.034	-2.7514	0.15635	-0.00033464	NaN	56.632	93	29	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	827810	+		6235	16388	4995	5004							0.08677026769032636
EDKLTYQL	8	Unmodified	_EDKLTYQL_					0	0	0			REV__nc|ENSG00000239388|A6NK59-2|ASB14	REV__nc|ENSG00000239388|A6NK59-2|ASB14	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.2754821777344	2	505.263665	1008.51278	-1.5681	-0.00079232	-4.1082	-0.0020757	-5.6764	-0.0028681	505.26132015676353	85.481	1.3483	83.26	82.888	84.237	-2.2204					44	26	3	0	0	0	0.028476	1	4988	4988		110.12	19.343	1	112520	+		6236	23430	4996	5005	7353	7353					0.008860439694331035
EDKPKKPYL	9	Unmodified	_EDKPKKPYL_					0	0	0			REV__ENST00000555222.5_1_12:57492966-57496222:-|nuORF	REV__ENST00000555222.5_1_12:57492966-57496222:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	560.2760620117188	2	559.316232	1116.61791	-0.14346	-8.0237E-05	2.4811	0.0013877	2.3376	0.0013075	559.3174536653527	107.68	1.3431	106.42	105.86	107.2	-1.267					42	25	3	0	0	0	0.027462	1	7607	7607		21.96	1.013	1	59930	+		6237	21231	4997	5006	7354	7354					0.06426585165854704
EDKREKIN	8	Unmodified	_EDKREKIN_					0	0	0			REV__ENSG00000232125|ENST00000452335|DYTN	REV__ENSG00000232125|ENST00000452335|DYTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.3165893554688	2	516.277638	1030.54072	0.80104	0.00041356	-2.1966	-0.001134	-1.3955	-0.00072049	516.2763914176553	131.54	0.37575	131.54	131.34	131.72	0					10	7	2	0	0	0	0.028476	1	15251	15251		16.473	4.2663	1	44958	+		6238	23393	4998	5007	7355	7355					0.02667366949526695
EDKRKKLCE	9	Unmodified	_EDKRKKLCE_					0	0	0		nc|ENSG00000111785|Q9NVN3|RIC8B;nc|ENSG00000111785|Q9NVN3-1|RIC8B;ENSG00000111785|ENST00000392837|RIC8B	nc|ENSG00000111785|Q9NVN3|RIC8B	nc|ENSG00000111785|Q9NVN3|RIC8B	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.3208618164062	2	574.808248	1147.60194	-0.16163	-9.2907E-05	-4.3682	-0.0025109	-4.5298	-0.0026038	575.3071814603561	101.68	0.63876	101.68	101.36	102	0					19	14	2	0	0	0	0.027462	1	11291	11291		23.523	7.0495	1	1001800			6239	2852	4999	5008	7356	7356					0.03404555657311903
EDKRSVTLD	9	Unmodified	_EDKRSVTLD_					0	0	0		nc|ENSG00000291104|Q96KV6|BTN2A3P	nc|ENSG00000291104|Q96KV6|BTN2A3P	nc|ENSG00000291104|Q96KV6|BTN2A3P	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.7861938476562	2	531.774928	1061.5353	-0.049332	-2.6234E-05	-2.2622	-0.001203	-2.3116	-0.0012292	532.2729222434957	69.27	0.20207	69.27	69.145	69.347	0					6	4	2	0	0	0	0.027448	1	6583	6583		35.618	6.4687	1	226060			6240	15400	5000	5009	7357	7357					0.006996433670565239
EDKSVEPVKV	10	Unmodified	_EDKSVEPVKV_					0	0	0		tr|A0A7D6ZZJ8|A0A7D6ZZJ8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06335PE=4SV=1	tr|A0A7D6ZZJ8|A0A7D6ZZJ8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06335PE=4SV=1	tr|A0A7D6ZZJ8|A0A7D6ZZJ8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06335PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.3070678710938	2	565.308603	1128.60265	3.3072	0.0018696	-3.5134	-0.0019862	-0.20627	-0.0001166	565.3064668312807	136.75	0.73138	135.21	135.03	135.76	-1.5437					24	14	2	0	0	0	0.61634	1	13284	13284		40.058	2.2467	1	53938			6241	35963	5001	5010	7358	7358					0.043496735779854134
EDKTVHVVF	9	Unmodified	_EDKTVHVVF_					0	0	0			REV__nc|ENSG00000143776|Q5VT25-3|CDC42BPA	REV__nc|ENSG00000143776|Q5VT25-3|CDC42BPA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.8074340820312	2	537.284931	1072.55531	-0.68225	-0.00036656	-4.1814	-0.0022466	-4.8637	-0.0026132	537.2820148416178	75.364	0.77772	72.133	71.915	72.693	-3.2308					36	15	3	0	0	0	0.02744	1	5919	5919		62.107	8.756	1	146390	+		6242	19867	5002	5011	7359	7359					0.021934390976412033
EDKVIPVTR	9	Unmodified	_EDKVIPVTR_					0	0	0		ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;ENST00000521903.5_1_8:124361561-124413087:-|nuORF;ENST00000519124.5_1_8:124382257-124392860:-|nuORF	ENSG00000156802|ENST00000287394|ATAD2	ENSG00000156802|ENST00000287394|ATAD2	MULTI-MSMS	OvCa9_classI_Rep2	2	529.3059692382812	2	528.806031	1055.59751	-1.2413	-0.00065642	-1.9712	-0.0010424	-3.2125	-0.0016988	529.3059963064875	103.84	3.275	103.27	102.83	106.11	-0.57639					87	65	2	0	0	0	0.51177	1	9594	9594		41.427	0	1	765080			6243	5857	5003	5012	7360	7360					0.07193414506036788
EDLAFYSSTV	10	Unmodified	_EDLAFYSSTV_					0	0	0		nc|ENSG00000064419|Q9Y5L0-5|TNPO3;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3;nc|ENSG00000064419|Q9Y5L0-1|TNPO3	nc|ENSG00000064419|Q9Y5L0-5|TNPO3	nc|ENSG00000064419|Q9Y5L0-5|TNPO3	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.298828125	2	566.263862	1130.51317	2.0028	0.0011341	1.1245	0.00063676	3.1273	0.0017709	566.7654348555477	134.81	0.43234	134.81	134.7	135.13	0					12	9	2	0	0	0	0.026956	1	15737	15737		26.693	12.556	1	400430			6244	1300	5004	5013	7361	7361					-0.04686581101373122
EDLAKKLKI	9	Unmodified	_EDLAKKLKI_					0	0	0		tr|A0A7D6ZXJ8|A0A7D6ZXJ8_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_23240PE=3SV=1	tr|A0A7D6ZXJ8|A0A7D6ZXJ8_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_23240PE=3SV=1	tr|A0A7D6ZXJ8|A0A7D6ZXJ8_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_23240PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7962036132812	2	529.334424	1056.6543	2.0093	0.0010636	-0.19356	-0.00010246	1.8157	0.00096111	529.3341946976759	76.529	0.96853	76.529	76.076	77.044	0					45	23	4	0	0	0	0.027304	1	7633	7633		67.494	9.2637	1	1967400			6245	35883	5005	5014	7362	7362					0.12823462062556246
EDLAVIKDN	9	Unmodified	_EDLAVIKDN_					0	0	0		tr|A0A553SHX9|A0A553SHX9_NIACIGlycosidehydrolasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_13830PE=3SV=1	tr|A0A553SHX9|A0A553SHX9_NIACIGlycosidehydrolasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_13830PE=3SV=1	tr|A0A553SHX9|A0A553SHX9_NIACIGlycosidehydrolasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_13830PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7884826660156	2	508.766571	1015.51859	2.2436	0.0011415	-1.2573	-0.00063967	0.98629	0.00050179	508.7655853036501	96.615	0.93536	96.615	96.418	97.353	0					26	21	2	0	0	0	0.02744	1	10598	10598		62.107	9.1707	1	562720			6246	33324	5006	5015	7363	7363					0.011451424810957178
EDLDYMTF	8	Unmodified	_EDLDYMTF_					0	0	0			REV__nc|ENSG00000140279|Q9NRD8|DUOX2	REV__nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.2391357421875	2	517.212783	1032.41101	-1.0152	-0.00052507	2.2025	0.0011392	1.1873	0.00061408	517.2136230034002	33.939	1.093	33.939	33.632	34.725	0					34	22	3	0	0	0	0.028476	1	1657	1657		60.294	0	1	59295	+		6247	19658	5007	5016	7364	7364					-0.10389570444658602
EDLEKARIF	9	Unmodified	_EDLEKARIF_					0	0	0		tr|A0A7D6VU79|A0A7D6VU79_9CLOTATPsynthasesubunitbOS=ClostridiumintestinaleOX=36845GN=atpFPE=3SV=1	tr|A0A7D6VU79|A0A7D6VU79_9CLOTATPsynthasesubunitbOS=ClostridiumintestinaleOX=36845GN=atpFPE=3SV=1	tr|A0A7D6VU79|A0A7D6VU79_9CLOTATPsynthasesubunitbOS=ClostridiumintestinaleOX=36845GN=atpFPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	560.8020629882812	2	560.803488	1119.59242	1.6039	0.00089945	-2.0042	-0.0011239	-0.40031	-0.00022449	560.8023528609191	128.62	2.5229	128.4	128.08	130.6	-0.22697					138	50	5	0	0	0	0.14998	1	12751	12751		84.916	13.038	1	2179300			6248	35171	5008	5017	7365	7365					0.03741110643431966
EDLEVVKNQL	10	Unmodified	_EDLEVVKNQL_					0	0	0			REV__tr|A0A7D6ZWU4|A0A7D6ZWU4_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_19315PE=3SV=1	REV__tr|A0A7D6ZWU4|A0A7D6ZWU4_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_19315PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	593.818359375	2	593.819335	1185.62412	-0.30051	-0.00017845	0.10235	6.078E-05	-0.19815	-0.00011767	593.8193214479901	110.88	1.6772	110.74	110.29	111.96	-0.13961					90	33	4	0	0	0	0.41408	1	10452	10452		66.429	11.653	1	215050	+		6249	32302	5009	5018	7366	7366					0.03873058606723134
EDLGFDETL	9	Unmodified	_EDLGFDETL_					0	0	0			REV__tr|A0A553SG48|A0A553SG48_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_10185PE=3SV=1	REV__tr|A0A553SG48|A0A553SG48_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_10185PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	519.7352294921875	2	519.734937	1037.45532	0.90318	0.00046941	-1.2953	-0.00067321	-0.39212	-0.0002038	519.7341331500729	91.156	0.8124	91.156	90.899	91.711	0					49	19	3	0	0	0	0.36502	1	9799	9799		55.504	0.72789	1	4494700	+		6250	29660	5010	5019	7367	7367					-0.061908430267976655
EDLIEQAR	8	Unmodified	_EDLIEQAR_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.32806396484375	2	487.251089	972.487624	2.6202	0.0012767	3.437	0.0016747	6.0572	0.0029514	487.2525765168538	96.397	0.49974	96.397	96.21	96.71	0					20	11	2	0	0	0	0.028476	1	10589	10589		49.442	21.187	1	461910	+		6251	18991	5011	5020	7368	7368					0.0002798916684696451
EDLIKAKEKEV	11	Unmodified	_EDLIKAKEKEV_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-8|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-2|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.7818298339844	3	434.581887	1300.72383	0.63816	0.00027733	0.38899	0.00016905	1.0272	0.00044638	434.58195458826975	57.443	0.76471	54.098	53.73	54.495	-3.3449					22	14	2	0	0	0	0.025955	1	3706	3706		18.531	4.445	1	14273			6252	4036	5012	5021	7369	7369					0.08549876220627084
EDLIKSCEL	9	Unmodified	_EDLIKSCEL_					0	0	0		nc|ENSG00000053524|Q86YR7-4|MCF2L2;ENSG00000053524|ENST00000328913|MCF2L2;ENST00000488149.5_1_3:182910742-182941939:-|nuORF	nc|ENSG00000053524|Q86YR7-4|MCF2L2	nc|ENSG00000053524|Q86YR7-4|MCF2L2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.837158203125	2	525.262807	1048.51106	0.0032062	1.6841E-06	-3.5348	-0.0018567	-3.5316	-0.001855	525.2611098035417	113.85	0.74638	112.4	112.2	112.94	-1.4461					28	14	3	0	0	0	0.027418	1	10607	10607		71.877	8.5712	1	25105			6253	1198	5013	5022	7370	7370					-0.01125333110826432
EDLIKSCEL	9	Unmodified	_EDLIKSCEL_					0	0	0		nc|ENSG00000053524|Q86YR7-4|MCF2L2;ENSG00000053524|ENST00000328913|MCF2L2;ENST00000488149.5_1_3:182910742-182941939:-|nuORF	nc|ENSG00000053524|Q86YR7-4|MCF2L2	nc|ENSG00000053524|Q86YR7-4|MCF2L2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	525.262807	1048.51106	0.66221	0.00034783	-4.2091	-0.0022109	-3.5469	-0.0018631	525.2603514706504	112.87	0.78825	112.75	112.28	113.07	-0.12174	0.22717	-0.00054604	NaN	71.877	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15385			6254	1198	5013	5022							-0.01125333110826432
EDLIKSCEL	9	Unmodified	_EDLIKSCEL_					0	0	0		nc|ENSG00000053524|Q86YR7-4|MCF2L2;ENSG00000053524|ENST00000328913|MCF2L2;ENST00000488149.5_1_3:182910742-182941939:-|nuORF	nc|ENSG00000053524|Q86YR7-4|MCF2L2	nc|ENSG00000053524|Q86YR7-4|MCF2L2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	525.262807	1048.51106	0.39722	0.00020864	-3.3686	-0.0017694	-2.9713	-0.0015607	525.2607081615799	113.5	0.83138	112.42	112.2	113.03	-1.0753	-0.10463	0.00033703	NaN	71.877	23	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29515			6255	1198	5013	5022							-0.01125333110826432
EDLILLEPN	9	Unmodified	_EDLILLEPN_					0	0	0			REV__tr|A0A7D6ZSG7|A0A7D6ZSG7_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07730PE=3SV=1	REV__tr|A0A7D6ZSG7|A0A7D6ZSG7_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07730PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.31494140625	2	528.284597	1054.55464	-0.59924	-0.00031657	0.27726	0.00014647	-0.32198	-0.0001701	528.2837748463594	75.446	0.58285	72.42	72.12	72.703	-3.026					18	11	2	0	0	0	0.027462	1	5947	5947		35.618	5.1146	1	19258	+		6256	32186	5014	5023	7371	7371					0.029545996579372513
EDLINVQL	8	Unmodified	_EDLINVQL_					0	0	0			REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|154|3|sense	REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|154|3|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.77496337890625	2	472.258382	942.502212	0.026166	1.2357E-05	0.96006	0.0004534	0.98623	0.00046575	472.25845673111934	71.048	0.87274	67.591	67.251	68.124	-3.4563					23	17	2	0	0	0	0.028476	1	5375	5375		51.335	0	1	83663	+		6257	28547	5015	5024	7372	7372					0.028660613150123027
EDLIPKLP	8	Unmodified	_EDLIPKLP_					0	0	0		nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.769775390625	2	462.773668	923.532783	-0.31046	-0.00014367	-3.1599	-0.0014623	-3.4704	-0.001606	462.77211827288943	56.974	1.2223	53.629	53.273	54.495	-3.3449					39	23	3	0	0	0	0.028476	1	3730	3730		33.516	3.674	1	81480			6258	9500	5016	5025	7373	7373					0.06795839700043871
EDLIPKLP	8	Unmodified	_EDLIPKLP_					0	0	0		nc|ENSG00000261236|Q14137-2|BOP1;ENSG00000261236|ENST00000569669|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	nc|ENSG00000261236|Q14137-2|BOP1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	462.773668	923.532783	-0.48424	-0.00022409	-2.3885	-0.0011053	-2.8727	-0.0013294	462.77242842541756	53.75	0.73976	53.75	53.432	54.172	0	0.060533	0.00022889	NaN	37.159	29	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1107800			6259	9500	5016	5025							0.06795839700043871
EDLIQIAEEF	10	Unmodified	_EDLIQIAEEF_					0	0	0			REV__tr|A0A553SNG4|A0A553SNG4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24425PE=4SV=1	REV__tr|A0A553SNG4|A0A553SNG4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24425PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	603.84228515625	2	603.798069	1205.58158	1.1479	0.0006931	-1.505	-0.0009087	-0.35707	-0.0002156	604.2986286185343	132.42	0.52264	132.42	132.27	132.8	0					17	10	2	0	0	0	0.027033	1	15388	15388		27.047	0	1	114960	+		6260	30422	5017	5026	7374	7374					-0.012983365215404774
EDLIVILVT	9	Unmodified	_EDLIVILVT_					0	0	0			REV__L1MB2_dup734|chr2:41391481-41393110:-|2.5038669870492565|0.0056028466714037|8.8|420.0|76|1|anti-sense	REV__L1MB2_dup734|chr2:41391481-41393110:-|2.5038669870492565|0.0056028466714037|8.8|420.0|76|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.2815856933594	2	507.807708	1013.60086	-0.78093	-0.00039656	4.313	0.0021901	3.532	0.0017936	507.8098213161551	81.167	0.71459	78.845	78.543	79.257	-2.3226					26	13	2	0	0	0	0.027462	1	4497	4497		29.15	6.1071	1	217770	+		6261	28409	5018	5027	7375	7375					0.0946066456006065
EDLKMARNL	9	Oxidation (M)	_EDLKM(Oxidation (M))ARNL_		EDLKM(1)ARNL		EDLKM(99)ARNL	0	0	1		ENSG00000183434|ENST00000310125|TFDP3	ENSG00000183434|ENST00000310125|TFDP3	ENSG00000183434|ENST00000310125|TFDP3	MULTI-MSMS	OvCa9_classI_Rep2	2	553.2850952148438	2	553.287148	1104.55974	0.85139	0.00047107	-4.0721	-0.002253	-3.2207	-0.001782	553.284790859176	109.08	1.8792	108.85	108.22	110.1	-0.22498					106	37	5	0	0	0	0.091859	1	10224	10224		99.375	11.679	1	452190			6262	8074	5019	5028	7376	7376		247			0.011645802489056223
EDLKMARNL	9	Oxidation (M)	_EDLKM(Oxidation (M))ARNL_		EDLKM(1)ARNL		EDLKM(110)ARNL	0	0	1		ENSG00000183434|ENST00000310125|TFDP3	ENSG00000183434|ENST00000310125|TFDP3	ENSG00000183434|ENST00000310125|TFDP3	MULTI-MSMS	OvCa9_classI_Rep3	3	553.28466796875	2	553.287148	1104.55974	-0.59107	-0.00032703	-2.5763	-0.0014255	-3.1674	-0.0017525	553.2856857803561	109.73	1.7878	108.59	107.77	109.56	-1.1444					78	33	4	0	0	0	0.059253	2	7892	7892;7909		113.41	11.897	1	975780			6263	8074	5019	5028	7377;7378	7377		247			0.011645802489056223
EDLKSTPK	8	Unmodified	_EDLKSTPK_					0	0	0			REV__ENST00000465942.1_1_13:46065604-46085992:+|nuORF	REV__ENST00000465942.1_1_13:46065604-46085992:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.7870788574219	2	459.250557	916.486562	-0.34044	-0.00015635	1.3233	0.00060772	0.98284	0.00045137	459.25116545903796	55.886	0.37115	55.886	55.723	56.094	0					15	8	2	0	0	0	0.028476	1	4626	4626		16.473	0.83134	1	212710	+		6264	19362	5020	5029	7379	7379					0.02497774797961938
EDLLDMFL	8	Unmodified	_EDLLDMFL_					0	0	0			REV__chr16:69154457-69168821|93|10.25|0.11|6.57|+|0|UTP4,UTP4|1	REV__chr16:69154457-69168821|93|10.25|0.11|6.57|+|0|UTP4,UTP4|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.3323974609375	2	498.241344	994.468134	-2.5331	-0.0012621	2.6604	0.0013255	0.12733	6.3439E-05	498.2431835417523	126.46	0.38934	125.04	124.78	125.17	-1.4143					11	7	2	0	0	0	0.028476	1	12013	12013		60.294	12.637	1	5777.8	+		6265	15938	5021	5030	7380	7380					-0.029321031682457033
EDLLKFIQ	8	Unmodified	_EDLLKFIQ_					0	0	0		ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	MULTI-MSMS	OvCa99_classI_Rep5	1	503.2860107421875	2	503.2844	1004.55425	2.6448	0.0013311	-0.15846	-7.975E-05	2.4864	0.0012513	503.28414634994164	115.76	0.88044	115.76	115.44	116.32	0					40	18	3	0	0	0	0.59148	1	13222	13222		65.803	0	1	1456200			6266	1771	5022	5031	7381	7381					0.0521522472874949
EDLLPTNLY	9	Unmodified	_EDLLPTNLY_					0	0	0			REV__ENSG00000155962|ENST00000369449|CLIC2;REV__ENST00000465553.5_1_X:154508114-154563754:-|nuORF	REV__ENST00000465553.5_1_X:154508114-154563754:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.2616577148438	2	539.276772	1076.53899	-0.4023	-0.00021695	-1.6087	-0.00086751	-2.011	-0.0010845	539.2759335300398	142.03	0.73674	140.56	140.29	141.02	-1.4627					28	13	3	0	0	0	0.027462	1	13891	13891		40.778	18.818	1	43812	+		6267	20451;26170	5023	5032	7382	7382					0.003783131409136331
EDLLPTNLY	9	Unmodified	_EDLLPTNLY_					0	0	0			REV__ENSG00000155962|ENST00000369449|CLIC2;REV__ENST00000465553.5_1_X:154508114-154563754:-|nuORF	REV__ENST00000465553.5_1_X:154508114-154563754:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	539.276772	1076.53899	-1.5515	-0.00083671	-1.2071	-0.00065099	-2.7587	-0.0014877	539.2759731907313	141.56	0.49489	140.55	140.34	140.83	-1.0106	-0.0087407	0.00030655	NaN	40.778	23	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23632	+		6268	20451;26170	5023	5032							0.003783131409136331
EDLNKRLSL	9	Unmodified	_EDLNKRLSL_					0	0	0		ENSG00000059758|ENST00000261211|CDK17;nc|ENSG00000059758|Q00537-2|CDK17;CDK17|p.L301Ifs*10|1|0.17|ENSG00000059758|chr12:96295084-96295096|GCAATATGCCAAA/-|frameshift_variant	ENSG00000059758|ENST00000261211|CDK17	ENSG00000059758|ENST00000261211|CDK17	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.8219604492188	2	544.308938	1086.60332	-0.71333	-0.00038827	0.53862	0.00029317	-0.17471	-9.5096E-05	544.3110188938983	90.686	1.4285	88.111	87.6	89.029	-2.575					33	27	2	0	0	0	0.027447	1	7774	7774		56.721	0	1	25332			6269	1256	5024	5033	7383	7383					0.06348513017701407
EDLNKRLSL	9	Unmodified	_EDLNKRLSL_					0	0	0		ENSG00000059758|ENST00000261211|CDK17;nc|ENSG00000059758|Q00537-2|CDK17;CDK17|p.L301Ifs*10|1|0.17|ENSG00000059758|chr12:96295084-96295096|GCAATATGCCAAA/-|frameshift_variant	ENSG00000059758|ENST00000261211|CDK17	ENSG00000059758|ENST00000261211|CDK17	MULTI-MATCH	OvCa9_classI_Rep3	3		2	544.308938	1086.60332	-0.67265	-0.00036613	6.192	0.0033704	5.5193	0.0030042	544.8150203602391	90.433	0.71793	88.352	87.953	88.67	-2.0805	0.12085	0.0034729	NaN	56.721	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41139			6270	1256	5024	5033							0.06348513017701407
EDLNTIPEV	9	Unmodified	_EDLNTIPEV_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7257080078125	2	515.258579	1028.50261	-0.37936	-0.00019547	0.68202	0.00035142	0.30266	0.00015595	515.2588473281078	35.649	0.50848	35.649	35.384	35.892	0					25	10	4	0	0	0	0.027441	1	1795	1795		49.442	20.292	1	156430			6271	5769	5025	5034	7384	7384					-0.010505637558026137
EDLPEVILTL	10	Unmodified	_EDLPEVILTL_					0	0	0		nc|ENSG00000172139|Q4G0N8-2|SLC9C1;SLC9C1|p.S1123Yfs*16|1|0.44|ENSG00000172139|chr3:112155046-112155047|-/T|frameshift_variant;ENSG00000172139|ENST00000305815|SLC9C1;SLC9C1|p.S360Mfs*11|1|0.05|ENSG00000172139|chr3:112263042-112263043|-/A|frameshift_variant	nc|ENSG00000172139|Q4G0N8-2|SLC9C1;SLC9C1|p.S360Mfs*11|1|0.05|ENSG00000172139|chr3:112263042-112263043|-/A|frameshift_variant	SLC9C1|p.S360Mfs*11|1|0.05|ENSG00000172139|chr3:112263042-112263043|-/A|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.2942504882812	2	571.32118	1140.62781	0.73577	0.00042036	-2.5033	-0.0014302	-1.7675	-0.0010098	571.3202479410866	142.03	0.44974	142.03	141.79	142.23	0					14	8	2	0	0	0	0.02661	1	16570	16570		68.787	17.451	1	26219			6272	7267;32836	5026	5035	7385	7385					0.06311728380592285
EDLPMFLR	8	Unmodified	_EDLPMFLR_					0	0	0			REV__ENSG00000145246|ENST00000273859|ATP10D	REV__ENSG00000145246|ENST00000273859|ATP10D	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.2900695800781	2	510.762778	1019.511	-0.80411	-0.00041071	-2.2171	-0.0011324	-3.0212	-0.0015431	510.76142192519956	94.873	1.9643	92.404	92.06	94.024	-2.4685					60	38	2	0	0	0	0.028476	1	8483	8483		37.159	19.794	1	142710	+		6273	19957	5027	5036	7386	7386					0.002027116798331008
EDLPMFLR	8	Unmodified	_EDLPMFLR_					0	0	0			REV__ENSG00000145246|ENST00000273859|ATP10D	REV__ENSG00000145246|ENST00000273859|ATP10D	MULTI-MATCH	OvCa9_classI_Rep2	2		2	510.762778	1019.511	-0.16879	-8.6209E-05	-2.607	-0.0013316	-2.7758	-0.0014178	510.7613062201956	93.403	1.3386	92.235	92.003	93.342	-1.168	-0.084691	-0.00017442	NaN	35.618	44	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115300	+		6274	19957	5027	5036							0.002027116798331008
EDLPRGTCSM	10	Unmodified	_EDLPRGTCSM_					0	0	0		ENST00000522893.1_1_8:616887-617025:-|nuORF	ENST00000522893.1_1_8:616887-617025:-|nuORF	ENST00000522893.1_1_8:616887-617025:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.2630615234375	2	554.741716	1107.46888	1.3537	0.00075096	-3.2325	-0.0017932	-1.8788	-0.0010423	555.2413905945868	143.41	0.44669	143.41	143.22	143.66	0					11	8	2	0	0	0	0.026782	1	16786	16786		30.318	0	1	169050			6275	13144	5028	5037	7387	7387					-0.08055631790853113
EDLPVITI	8	Unmodified	_EDLPVITI_					0	0	0		ENSG00000090020|ENST00000263980|SLC9A1;ENST00000374089.5_1_1:27426800-27429818:-|nuORF	ENSG00000090020|ENST00000263980|SLC9A1	ENSG00000090020|ENST00000263980|SLC9A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	449.2795715332031	2	450.257851	898.501149	-0.27348	-0.00012314	-2.3779	-0.0010707	-2.6513	-0.0011938	450.25660697492896	43.428	0.68164	43.428	43.227	43.909	0					29	15	3	0	0	0	0.028476	1	2917	2917		33.516	1.5607	1	556430			6276	1830	5029	5038	7388	7388					0.04783846946088488
EDLRAFQVQ	9	Unmodified	_EDLRAFQVQ_					0	0	0		nc|ENSG00000168487|P13497-3|BMP1;nc|ENSG00000168487|P13497-4|BMP1;nc|ENSG00000168487|P13497-5|BMP1;nc|ENSG00000168487|P13497-2|BMP1;BMP1|p.H749Qfs*3|1|0.09|ENSG00000168487|chr8:22206867-22206867|C/-|frameshift_variant;BMP1|p.H740Qfs*12|1|0.11|ENSG00000168487|chr8:22201915-22201915|C/-|frameshift_variant;nc|ENSG00000168487|P13497-6|BMP1;ENSG00000168487|ENST00000306385|BMP1	nc|ENSG00000168487|P13497-3|BMP1	nc|ENSG00000168487|P13497-3|BMP1	MULTI-MSMS	OvCa9_classI_Rep2	2	553.2846069335938	2	553.285463	1104.55637	0.8514	0.00047107	-1.0259	-0.00056763	-0.17453	-9.6563E-05	553.284790859176	109.08	1.8792	108.85	108.22	110.1	-0.22498					106	37	5	0	0	0	0.11471	1	10201	10201		93.195	0	1	452190			6277	152	5030	5039	7389	7389					0.008276534665810686
EDLRAFQVQ	9	Unmodified	_EDLRAFQVQ_					0	0	0		nc|ENSG00000168487|P13497-3|BMP1;nc|ENSG00000168487|P13497-4|BMP1;nc|ENSG00000168487|P13497-5|BMP1;nc|ENSG00000168487|P13497-2|BMP1;BMP1|p.H749Qfs*3|1|0.09|ENSG00000168487|chr8:22206867-22206867|C/-|frameshift_variant;BMP1|p.H740Qfs*12|1|0.11|ENSG00000168487|chr8:22201915-22201915|C/-|frameshift_variant;nc|ENSG00000168487|P13497-6|BMP1;ENSG00000168487|ENST00000306385|BMP1	nc|ENSG00000168487|P13497-3|BMP1	nc|ENSG00000168487|P13497-3|BMP1	MULTI-MSMS	OvCa9_classI_Rep3	3	553.2855834960938	2	553.285463	1104.55637	-0.59107	-0.00032703	0.46983	0.00025995	-0.12124	-6.7083E-05	553.2856857803561	109.73	1.7878	108.59	107.77	109.56	-1.1444					78	33	4	0	0	0	0.064985	1	7903	7903		110.12	0	1	975780			6278	152	5030	5039	7390	7390					0.008276534665810686
EDLRAPKDL	9	Unmodified	_EDLRAPKDL_					0	0	0		nc|ENSG00000119522|Q8TEH3-7|DENND1A;nc|ENSG00000119522|Q8TEH3|DENND1A;ENSG00000119522|ENST00000394215|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A	nc|ENSG00000119522|Q8TEH3-7|DENND1A	nc|ENSG00000119522|Q8TEH3-7|DENND1A	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.27001953125	2	528.787838	1055.56112	1.5072	0.00079699	3.9718	0.0021003	5.479	0.0028972	528.79007275633	109.98	1.0781	109.98	109.68	110.76	0					38	23	3	0	0	0	0.027432	1	12503	12503		49.536	16.724	1	354870			6279	14985	5031	5040	7391	7391					0.035565376093245504
EDLTIKNEL	9	Unmodified	_EDLTIKNEL_					0	0	0			REV__tr|A0A7D6ZX31|A0A7D6ZX31_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20530PE=4SV=1	REV__tr|A0A7D6ZX31|A0A7D6ZX31_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20530PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	537.788330078125	2	537.787504	1073.56045	2.6018	0.0013992	-0.84379	-0.00045378	1.758	0.00094542	537.7868458935005	75.349	0.51093	75.349	75.128	75.639	0					32	12	3	0	0	0	0.18193	1	7500	7500		79.451	5.196	1	3652400	+		6280	32312	5032	5041	7392	7392					0.02661698169617921
EDLVLELIF	9	Unmodified	_EDLVLELIF_					0	0	0		nc|ENSG00000165521|Q05BV3|EML5;ENSG00000165521|ENST00000554922|EML5;ENST00000553281.5_1_14:89088194-89171927:-|nuORF	nc|ENSG00000165521|Q05BV3|EML5	nc|ENSG00000165521|Q05BV3|EML5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.790283203125	2	545.805165	1089.59578	-1.0569	-0.00057686	-2.8018	-0.0015292	-3.8587	-0.0021061	545.8034258738204	91.964	0.71114	89.422	89.162	89.873	-2.5425					37	13	4	0	0	0	0.027462	1	8013	8013		29.15	0	1	209890			6281	6573	5033	5042	7393	7393					0.0545636069741704
EDLVPNGLD	9	Unmodified	_EDLVPNGLD_					0	0	0			REV__ENST00000587483.5_1_17:42391821-42393770:+|nuORF	REV__ENST00000587483.5_1_17:42391821-42393770:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.8091735839844	2	486.237647	970.460741	-0.83651	-0.00040674	1.6577	0.00080602	0.82115	0.00039927	486.23825211448633	49.69	1.7441	49.69	49.119	50.863	0					99	39	3	0	0	0	0.027426	1	3781	3781		56.721	1.9447	1	729570	+		6282	27875	5034	5043	7394	7394					-0.025671194443361856
EDLVPNGLD	9	Unmodified	_EDLVPNGLD_					0	0	0			REV__ENST00000587483.5_1_17:42391821-42393770:+|nuORF	REV__ENST00000587483.5_1_17:42391821-42393770:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	486.237647	970.460741	-1.0848	-0.00052749	0.50962	0.0002478	-0.57522	-0.00027969	486.23808948187565	52.315	1.0368	49.502	49.146	50.183	-2.8129	0.018176	-0.00090274	NaN	56.721	35	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44752	+		6283	27875	5034	5043							-0.025671194443361856
EDLVQPHLSL	10	Unmodified	_EDLVQPHLSL_					0	0	0			REV__nc|ENSG00000112541|Q9Y233-1|PDE10A	REV__nc|ENSG00000112541|Q9Y233-1|PDE10A	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8098754882812	2	575.808771	1149.60299	-2.0964	-0.0012071	1.3994	0.00080578	-0.69706	-0.00040137	575.8095992542658	125.17	1.0641	123.78	123.49	124.55	-1.3908					48	20	3	0	0	0	0.42082	1	11884	11884		65.465	3.358	1	106460	+		6284	18106	5035	5044	7395	7395					0.034170932978668134
EDLVQPHLSL	10	Unmodified	_EDLVQPHLSL_					0	0	0			REV__nc|ENSG00000112541|Q9Y233-1|PDE10A	REV__nc|ENSG00000112541|Q9Y233-1|PDE10A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	575.808771	1149.60299	-0.46078	-0.00026532	0.037824	2.1779E-05	-0.42296	-0.00024354	575.8087124807735	123.99	0.98636	123.76	123.53	124.52	-0.23193	-0.012323	-0.00019576	NaN	65.465	45	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82782	+		6285	18106	5035	5044							0.034170932978668134
EDLVQPHLSL	10	Unmodified	_EDLVQPHLSL_					0	0	0			REV__nc|ENSG00000112541|Q9Y233-1|PDE10A	REV__nc|ENSG00000112541|Q9Y233-1|PDE10A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	575.808771	1149.60299	0.80332	0.00046256	-1.229	-0.00070766	-0.42566	-0.0002451	575.8081173377949	124.82	0.9415	123.77	123.48	124.42	-1.0519	0.0025429	-0.0016546	NaN	65.465	48	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122910	+		6286	18106	5035	5044							0.034170932978668134
EDLVQPHLSL	10	Unmodified	_EDLVQPHLSL_					0	0	0			REV__nc|ENSG00000112541|Q9Y233-1|PDE10A	REV__nc|ENSG00000112541|Q9Y233-1|PDE10A	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	575.808771	1149.60299	-2.0964	-0.0012071	1.3994	0.00080578	-0.69706	-0.00040137	575.8095992542658	125.17	1.0641	123.78	123.49	124.55	-1.3908	0.0097798	0.0013722	NaN	65.465	48	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106460	+		6287	18106	5035	5044							0.034170932978668134
EDLVYQAKL	9	Unmodified	_EDLVYQAKL_					0	0	0		ENSG00000108953|ENST00000264335|YWHAE;YWHAE-SLC43A2|1|fusion;ENST00000489287.1_1_17:1268113-1303470:-|nuORF;ENST00000486241.1_1_17:1265194-1303470:-|nuORF;ENST00000498643.1_1_17:1302531-1303404:-|nuORF;ENST00000576854.1_1_17:1303083-1303470:-|nuORF	ENSG00000108953|ENST00000264335|YWHAE	ENSG00000108953|ENST00000264335|YWHAE	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.3137817382812	2	539.792589	1077.57063	1.6591	0.00089559	1.0303	0.00055617	2.6895	0.0014518	539.7931311256605	118.72	0.98672	118.72	118.44	119.43	0					40	20	3	0	0	0	0.027343	1	13624	13624		58.782	0	1	266750			6288	2689	5036	5045	7396	7396					0.03494305894855643
EDLYKVLIN	9	Unmodified	_EDLYKVLIN_					0	0	0		tr|A0A553ST04|A0A553ST04_NIACILipoproteinOS=NialliacirculansOX=1397GN=CEQ21_04045PE=4SV=1	tr|A0A553ST04|A0A553ST04_NIACILipoproteinOS=NialliacirculansOX=1397GN=CEQ21_04045PE=4SV=1	tr|A0A553ST04|A0A553ST04_NIACILipoproteinOS=NialliacirculansOX=1397GN=CEQ21_04045PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.8486938476562	2	553.808239	1105.60193	1.8964	0.0010502	-1.8414	-0.0010198	0.054974	3.0445E-05	553.8054777068058	110.24	0.35889	110.24	110.04	110.4	0					10	7	2	0	0	0	0.027441	1	12520	12520		49.442	0	1	90835			6289	34444	5037	5046	7397	7397					0.05334878928965736
EDLYWGIG	8	Unmodified	_EDLYWGIG_					0	0	0			REV__nc|ENSG00000160282|O95954-3|FTCD	REV__nc|ENSG00000160282|O95954-3|FTCD	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.7437744140625	2	476.724175	951.433798	-0.0080312	-3.8287E-06	-3.83	-0.0018259	-3.838	-0.0018297	476.7220331241282	47.078	0.70235	47.078	46.762	47.465	0					40	15	4	0	0	0	0.028476	1	3410	3410		20.482	3.1169	1	292940	+		6290	20651	5038	5047	7398	7398					-0.043861832648417476
EDMDLDELDL	10	Unmodified	_EDMDLDELDL_					0	0	0			REV__ENSG00000166352|ENST00000334307|IFTAP	REV__ENSG00000166352|ENST00000334307|IFTAP	MULTI-SECPEP	OvCa99_classI_Rep5	1	604.335693359375	2	604.255376	1206.4962	2.1557	0.0013026	-2.267	-0.0013698	-0.11127	-6.7236E-05	604.2541604066682	122.35	0.36375	122.35	122.17	122.54	0					10	7	2	0	0	0	0.026523	1	14089	14089		68.787	37.257	1	98005	+		6291	21183	5039	5048	7399	7399					-0.09878869769499943
EDMENEIDEL	10	Unmodified	_EDMENEIDEL_					0	0	0		ENSG00000160075|ENST00000291386|SSU72;ENST00000378726.1_1_1:1477448-1480390:-|nuORF	ENSG00000160075|ENST00000291386|SSU72	ENSG00000160075|ENST00000291386|SSU72	MULTI-SECPEP	OvCa99_classI_Rep5	1	618.32275390625	2	618.750458	1235.48636	1.2358	0.00076463	3.4172	0.0021144	4.653	0.002879	618.7526904301501	124.84	0.18736	124.84	124.74	124.93	0					5	3	2	0	0	0	0.026891	1	14414	14414		24.519	0	1	42065			6292	6036	5040	5049	7400	7400					-0.12196057774872315
EDMFPYEG	8	Unmodified	_EDMFPYEG_					0	0	0		ENSG00000169660|ENST00000327949|HEXD;nc|ENSG00000169660|Q8WVB3-2|HEXD	ENSG00000169660|ENST00000327949|HEXD	ENSG00000169660|ENST00000327949|HEXD	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.7839050292969	2	494.191851	986.369149	0.27889	0.00013782	-3.5298	-0.0017444	-3.2509	-0.0016066	494.19005316835035	72.023	0.41376	72.023	71.835	72.249	0					12	9	2	0	0	0	0.028476	1	7019	7019		26.796	7.4361	1	187900			6293	7027	5041	5050	7401	7401					-0.1245812613316275
EDMILAKI	8	Unmodified	_EDMILAKI_					0	0	0		tr|A0A7D6ZWU4|A0A7D6ZWU4_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_19315PE=3SV=1	tr|A0A7D6ZWU4|A0A7D6ZWU4_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_19315PE=3SV=1	tr|A0A7D6ZWU4|A0A7D6ZWU4_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_19315PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.75555419921875	2	466.759704	931.504854	-0.47023	-0.00021949	2.6325	0.0012287	2.1622	0.0010092	466.7608690013421	59.721	0.78355	59.721	59.494	60.277	0					49	19	3	0	0	0	0.028476	1	5234	5234		24.203	4.206	1	1944700			6294	35855	5042	5051	7402	7402					0.03636193448301128
EDMLHLQKL	9	Unmodified	_EDMLHLQKL_					0	0	0		tr|A0A7D7A2J6|A0A7D7A2J6_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20195PE=3SV=1	tr|A0A7D7A2J6|A0A7D7A2J6_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20195PE=3SV=1	tr|A0A7D7A2J6|A0A7D7A2J6_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20195PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.2681884765625	2	563.799891	1125.58523	2.6985	0.0015214	-3.0784	-0.0017356	-0.37987	-0.00021417	563.7979526245718	99.663	0.74462	99.663	99.405	100.15	0					36	17	3	0	0	0	0.027441	1	11076	11076		58.782	12.81	1	3551700			6295	36081	5043	5052	7403	7403					0.027460547713417327
EDMLRRHM	8	Unmodified	_EDMLRRHM_					0	0	0		nc|ENSG00000133488|Q9UDX3-2|SEC14L4;ENST00000320982.3_1_22:30886116-30899718:-|nuORF;ENSG00000133488|ENST00000255858|SEC14L4	nc|ENSG00000133488|Q9UDX3-2|SEC14L4	nc|ENSG00000133488|Q9UDX3-2|SEC14L4	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.7689819335938	2	544.26041	1086.50627	1.8302	0.00099608	-0.79704	-0.0004338	1.0331	0.00056228	544.2601138126546	137.92	0.8573	137.92	137.45	138.31	0					23	18	2	0	0	0	0.028476	1	16038	16038		33.516	23.81	1	63435			6296	4223	5044	5053	7404	7404					-0.03352495734588956
EDMLSNLHL	9	Oxidation (M)	_EDM(Oxidation (M))LSNLHL_		EDM(1)LSNLHL		EDM(74)LSNLHL	0	0	1		SF3B3-DDX19B|3|fusion;SF3B3-DDX19B|2|fusion	SF3B3-DDX19B|3|fusion	SF3B3-DDX19B|3|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	544.2620849609375	2	544.258056	1086.50156	1.2021	0.00065424	2.5037	0.0013626	3.7058	0.0020169	544.2592446117724	149.9	1.0937	149.9	149.55	150.64	0					60	21	4	0	0	0	0.21231	1	17528	17528		74.255	7.8258	1	810540			6297	32815	5045	5054	7405	7405		722			-0.03823101396369566
EDMMTLSAQTL	11	Unmodified	_EDMMTLSAQTL_					0	0	0		ENSG00000187550|ENST00000413299|SBK2	ENSG00000187550|ENST00000413299|SBK2	ENSG00000187550|ENST00000413299|SBK2	MULTI-MSMS	OvCa9_classI_Rep3	3	620.2850952148438	2	620.283414	1238.55227	0.97611	0.00060547	-1.2301	-0.00076302	-0.25401	-0.00015756	620.2825283281682	131.93	0.89603	130.8	130.59	131.49	-1.1249					36	17	3	0	0	0	0.65063	1	10548	10548		40.058	0.80534	1	54019			6298	8410	5046	5055	7406	7406					-0.057459401336700466
EDMQFQRL	8	Unmodified	_EDMQFQRL_					0	0	0		ENSG00000039987|ENST00000553030|BEST2	ENSG00000039987|ENST00000553030|BEST2	ENSG00000039987|ENST00000553030|BEST2	MULTI-MSMS	OvCa99_classI_Rep5	1	533.7552490234375	2	533.752941	1065.49133	1.5843	0.0008456	0.89681	0.00047867	2.4811	0.0013243	533.7532118440084	148.37	0.73904	148.37	148.03	148.77	0					38	14	4	0	0	0	0.56195	1	17349	17349		71.296	5.8303	1	463100			6299	1109	5047	5056	7407	7407					-0.038796643309296996
EDMWLIEG	8	Unmodified	_EDMWLIEG_					0	0	0		nc|ENSG00000042062|Q96MK2|RIPOR3;ENSG00000042062|ENST00000327979|RIPOR3;nc|ENSG00000042062|Q96MK2-2|RIPOR3;ENST00000462493.1_1_20:49214115-49253138:-|nuORF	nc|ENSG00000042062|Q96MK2|RIPOR3	nc|ENSG00000042062|Q96MK2|RIPOR3	MULTI-SECPEP	OvCa9_classI_Rep2	2	496.7603454589844	2	496.723318	991.432083	0.011462	5.6932E-06	3.8559	0.0019153	3.8674	0.001921	496.7238222299727	72.934	0.67661	70.534	70.272	70.949	-2.3999					17	12	2	0	0	0	0.028476	1	5955	5955		25.45	0	1	22509			6300	1121	5048	5057	7408	7408					-0.06397560345112652
EDNDFQQI	8	Unmodified	_EDNDFQQI_					0	0	0			REV__PPP6R1|p.D622N|1|0.13|ENSG00000105063|chr19:55236767-55236767|C/T|missense_variant	REV__PPP6R1|p.D622N|1|0.13|ENSG00000105063|chr19:55236767-55236767|C/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.28802490234375	2	504.717079	1007.4196	2.2501	0.0011357	3.5364	0.0017849	5.7865	0.0029205	504.7188788484029	82.587	0.4294	82.587	82.394	82.824	0					12	9	2	0	0	0	0.028476	1	8546	8546		37.159	9.2769	1	172380	+		6301	29316	5049	5058	7409	7409					-0.08380880483798592
EDNDVFILSIQ	11	Unmodified	_EDNDVFILSIQ_					0	0	0			REV__tr|A0A7D6ZFT8|A0A7D6ZFT8_9CLOTEndoribonucleaseYbeYOS=ClostridiumintestinaleOX=36845GN=ybeYPE=3SV=1	REV__tr|A0A7D6ZFT8|A0A7D6ZFT8_9CLOTEndoribonucleaseYbeYOS=ClostridiumintestinaleOX=36845GN=ybeYPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	646.8226318359375	2	646.822075	1291.6296	1.8647	0.0012061	0.91465	0.00059162	2.7794	0.0017978	646.8226563548138	135.55	1.126	135.55	135.22	136.35	0					41	23	2	0	0	0	0.26821	1	15816	15816		70.816	0.41764	1	2018600	+		6302	31980	5050	5059	7410	7410					-0.00455262601440154
EDNFFKALGF	10	Unmodified	_EDNFFKALGF_					0	0	0		tr|A0A7D6VNG0|A0A7D6VNG0_9CLOT1-deoxy-D-xylulose-5-phosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12740PE=3SV=1	tr|A0A7D6VNG0|A0A7D6VNG0_9CLOT1-deoxy-D-xylulose-5-phosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12740PE=3SV=1	tr|A0A7D6VNG0|A0A7D6VNG0_9CLOT1-deoxy-D-xylulose-5-phosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12740PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	594.8538818359375	2	594.290214	1186.56587	-0.20865	-0.000124	-4.0888	-0.00243	-4.2975	-0.002554	594.2877393986184	78.355	0.65498	76.002	75.749	76.404	-2.3527					16	12	2	0	0	0	0.027021	1	4142	4142		21.96	0	1	17870			6303	34702	5051	5060	7411	7411					-0.019945782479226182
EDNIKINAL	9	Unmodified	_EDNIKINAL_					0	0	0		ZDBF2|p.D1840N|1|0.07|ENSG00000204186|chr2:206310046-206310046|G/A|missense_variant	ZDBF2|p.D1840N|1|0.07|ENSG00000204186|chr2:206310046-206310046|G/A|missense_variant	ZDBF2|p.D1840N|1|0.07|ENSG00000204186|chr2:206310046-206310046|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	515.2813110351562	2	515.282389	1028.55022	0.85124	0.00043863	2.2456	0.0011571	3.0969	0.0015958	515.2837199382453	104.32	1.6643	102.88	102.5	104.16	-1.4347					77	31	3	0	0	0	0.50149	1	7274	7274		42.396	1.618	1	555220			6304	36315	5052	5061	7412	7412					0.03709135235044414
EDNKVFAIT	9	Unmodified	_EDNKVFAIT_					0	0	0		tr|A0A7D7A3P4|A0A7D7A3P4_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22425PE=4SV=1	tr|A0A7D7A3P4|A0A7D7A3P4_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22425PE=4SV=1	tr|A0A7D7A3P4|A0A7D7A3P4_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22425PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.7882690429688	2	518.769114	1035.52368	-1.0667	-0.00055338	-0.64022	-0.00033213	-1.7069	-0.00088551	519.2708598195397	81.104	0.49117	78.394	78.052	78.543	-2.7106					12	9	2	0	0	0	0.027462	1	6647	6647		30.504	2.6214	1	55421			6305	36123	5053	5062	7413	7413					0.007334463437018712
EDNKVFAIT	9	Unmodified	_EDNKVFAIT_					0	0	0		tr|A0A7D7A3P4|A0A7D7A3P4_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22425PE=4SV=1	tr|A0A7D7A3P4|A0A7D7A3P4_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22425PE=4SV=1	tr|A0A7D7A3P4|A0A7D7A3P4_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22425PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	518.769114	1035.52368	0.29234	0.00015166	-1.9719	-0.001023	-1.6796	-0.0008713	519.269644190991	80.503	0.92384	78.18	77.878	78.802	-2.3226	-0.10681	-0.00059587	NaN	30.504	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19039			6306	36123	5053	5062							0.007334463437018712
EDNPFLDDLP	10	Unmodified	_EDNPFLDDLP_					0	0	0			REV__ENSG00000126214|ENST00000334553|KLC1	REV__ENSG00000126214|ENST00000334553|KLC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.8101196289062	2	587.766768	1173.51898	1.3751	0.00080822	-1.1764	-0.00069146	0.19864	0.00011676	587.7656154842424	112.04	0.69113	112.04	111.74	112.43	0					27	14	3	0	0	0	0.026802	1	12721	12721		19.997	0	1	250900	+		6307	18774	5054	5063	7414	7414					-0.06083482589701816
EDNSRLLQ	8	Unmodified	_EDNSRLLQ_					0	0	0		nc|ENSG00000290503|Q9HBA9|FOLH1B;ENST00000529567.5_1_11:89372457-89431764:+|nuORF	nc|ENSG00000290503|Q9HBA9|FOLH1B	nc|ENSG00000290503|Q9HBA9|FOLH1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.790283203125	2	487.748713	973.482873	-0.11877	-5.7932E-05	3.7123	0.0018107	3.5935	0.0017527	487.75064863168313	46.702	1.269	46.702	46.412	47.681	0					77	28	4	0	0	0	0.028476	1	3430	3430		49.442	0	1	1145800			6308	13275	5055	5064	7415	7415					-0.0049289497588915765
EDPFYRTI	8	Unmodified	_EDPFYRTI_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.3360595703125	2	520.756007	1039.49746	2.0149	0.0010493	4.0897	0.0021297	6.1046	0.003179	520.7579147289973	107.86	1.5791	107.86	107.44	109.02	0					86	36	3	0	0	0	0.028476	1	12318	12318		40.778	16.259	1	1014200	+		6309	19179	5056	5065	7416	7416					-0.020708228277499074
EDPGFSSPL	9	Unmodified	_EDPGFSSPL_					0	0	0		nc|ENSG00000132185|Q7L513-10|FCRLA;nc|ENSG00000132185|Q7L513-9|FCRLA;nc|ENSG00000132185|Q7L513-2|FCRLA;ENSG00000132185|ENST00000236938|FCRLA;nc|ENSG00000132185|Q7L513-8|FCRLA;nc|ENSG00000132185|Q7L513-15|FCRLA;nc|ENSG00000132185|Q7L513-12|FCRLA;nc|ENSG00000132185|Q7L513-3|FCRLA;nc|ENSG00000132185|Q7L513-11|FCRLA;nc|ENSG00000132185|Q7L513-7|FCRLA;nc|ENSG00000132185|Q7L513-14|FCRLA;nc|ENSG00000132185|Q7L513-4|FCRLA;nc|ENSG00000132185|Q7L513-5|FCRLA;nc|ENSG00000132185|Q7L513-13|FCRLA;nc|ENSG00000132185|Q7L513-6|FCRLA;ENST00000470841.1_1_1:161681590-161683167:+|nuORF	nc|ENSG00000132185|Q7L513-10|FCRLA	nc|ENSG00000132185|Q7L513-10|FCRLA	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.57696533203125	2	474.71909	947.423627	-0.087057	-4.1328E-05	-2.8613	-0.0013583	-2.9484	-0.0013997	474.71748800452065	78.54	1.1069	76.801	76.406	77.513	-1.7398					33	21	2	0	0	0	0.027456	1	6540	6540		23.042	0	1	29605			6310	4116	5057	5066	7417	7417					-0.05218790990079469
EDPINNPI	8	Unmodified	_EDPINNPI_					0	0	0		tr|A0A7D6ZY59|A0A7D6ZY59_9CLOT[FeFe]hydrogenaseH-clusterradicalSAMmaturaseHydGOS=ClostridiumintestinaleOX=36845GN=hydGPE=4SV=1	tr|A0A7D6ZY59|A0A7D6ZY59_9CLOT[FeFe]hydrogenaseH-clusterradicalSAMmaturaseHydGOS=ClostridiumintestinaleOX=36845GN=hydGPE=4SV=1	tr|A0A7D6ZY59|A0A7D6ZY59_9CLOT[FeFe]hydrogenaseH-clusterradicalSAMmaturaseHydGOS=ClostridiumintestinaleOX=36845GN=hydGPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	456.7979736328125	2	456.227082	910.439611	0.32941	0.00015029	3.5403	0.0016152	3.8697	0.0017655	456.22858200129645	103.56	0.34566	102.93	102.63	102.98	-0.62627					10	6	2	0	0	0	0.028476	1	9568	9568		60.972	6.1956	1	7834.1			6311	35909	5058	5067	7418	7418					-0.019190847531831423
EDPINNPI	8	Unmodified	_EDPINNPI_					0	0	0		tr|A0A7D6ZY59|A0A7D6ZY59_9CLOT[FeFe]hydrogenaseH-clusterradicalSAMmaturaseHydGOS=ClostridiumintestinaleOX=36845GN=hydGPE=4SV=1	tr|A0A7D6ZY59|A0A7D6ZY59_9CLOT[FeFe]hydrogenaseH-clusterradicalSAMmaturaseHydGOS=ClostridiumintestinaleOX=36845GN=hydGPE=4SV=1	tr|A0A7D6ZY59|A0A7D6ZY59_9CLOT[FeFe]hydrogenaseH-clusterradicalSAMmaturaseHydGOS=ClostridiumintestinaleOX=36845GN=hydGPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	456.227082	910.439611	0.36635	0.00016714	3.2467	0.0014812	3.6131	0.0016484	456.2282491301258	104.1	0.57492	102.67	102.34	102.92	-1.4347	-0.083515	-0.00014798	NaN	60.972	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17357			6312	35909	5058	5067							-0.019190847531831423
EDPINNPI	8	Unmodified	_EDPINNPI_					0	0	0		tr|A0A7D6ZY59|A0A7D6ZY59_9CLOT[FeFe]hydrogenaseH-clusterradicalSAMmaturaseHydGOS=ClostridiumintestinaleOX=36845GN=hydGPE=4SV=1	tr|A0A7D6ZY59|A0A7D6ZY59_9CLOT[FeFe]hydrogenaseH-clusterradicalSAMmaturaseHydGOS=ClostridiumintestinaleOX=36845GN=hydGPE=4SV=1	tr|A0A7D6ZY59|A0A7D6ZY59_9CLOT[FeFe]hydrogenaseH-clusterradicalSAMmaturaseHydGOS=ClostridiumintestinaleOX=36845GN=hydGPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	456.227082	910.439611	-0.10033	-4.5772E-05	3.1161	0.0014216	3.0158	0.0013759	456.2285339015933	104.77	0.4698	102.65	102.43	102.9	-2.1192	-0.097272	-0.00026719	NaN	60.972	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13021			6313	35909	5058	5067							-0.019190847531831423
EDPKEVPQV	9	Unmodified	_EDPKEVPQV_					0	0	0		ENSG00000186310|ENST00000373079|NAP1L3	ENSG00000186310|ENST00000373079|NAP1L3	ENSG00000186310|ENST00000373079|NAP1L3	MULTI-MSMS	OvCa9_classI_Rep2	2	520.76708984375	2	520.766571	1039.51859	-0.29569	-0.00015399	-0.060329	-3.1417E-05	-0.35602	-0.0001854	520.7664487988831	76.367	3.2453	74.513	73.837	77.082	-1.854					155	62	5	0	0	0	0.44568	1	6328	6328		47.657	1.6851	1	1235300			6314	8329	5059	5068	7419	7419					0.0004114248110909102
EDPKKEILLA	10	Unmodified	_EDPKKEILLA_					0	0	0		nc|ENSG00000129007|Q96GE6-3|CALML4;nc|ENSG00000129007|Q96GE6-2|CALML4;ENST00000562767.2_3_15:68486355-68521975:-|nuORF;nc|ENSG00000129007|Q96GE6-4|CALML4;ENSG00000129007|ENST00000467889|CALML4;nc|ENSG00000129007|Q96GE6|CALML4	nc|ENSG00000129007|Q96GE6-3|CALML4	nc|ENSG00000129007|Q96GE6-3|CALML4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	578.3232421875	2	578.334621	1154.65469	-0.84112	-0.00048645	-0.63614	-0.0003679	-1.4773	-0.00085435	578.3334199004919	83.097	0.5373	80.414	80.222	80.759	-2.6829					12	10	2	0	0	0	0.02706	1	6886	6886		30.318	0	1	28307			6315	3917	5060	5069	7420	7420					0.08354836991770753
EDPNFKKID	9	Unmodified	_EDPNFKKID_					0	0	0		nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	nc|ENSG00000198589|P50851-2|LRBA	nc|ENSG00000198589|P50851-2|LRBA	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.2805786132812	2	553.279846	1104.54514	-0.015512	-8.5826E-06	0.1845	0.00010208	0.16899	9.3498E-05	553.2794144098413	62.276	1.4469	58.818	58.244	59.691	-3.4577					88	29	5	0	0	0	0.3249	1	4329	4329		60.118	3.6845	1	544500			6316	8832	5061	5070	7421	7421					-0.0029516862757645868
EDPPLMVKKN	10	Unmodified	_EDPPLMVKKN_					0	0	0		ENSG00000131379|ENST00000253697|C3orf20;nc|nan|Q8ND61-2|C3orf20	ENSG00000131379|ENST00000253697|C3orf20	ENSG00000131379|ENST00000253697|C3orf20	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.9971313476562	2	585.812999	1169.61144	1.8667	0.0010935	-3.7884	-0.0022193	-1.9218	-0.0011258	585.809405802909	106.66	0.18148	106.66	106.54	106.72	0					5	3	2	0	0	0	0.026802	1	12013	12013		34.173	0	1	104910			6317	4060	5062	5071	7422	7422					0.03342323942842995
EDPQSNLND	9	Unmodified	_EDPQSNLND_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7762451171875	2	516.217443	1030.42033	0.12927	6.6731E-05	-1.9005	-0.0009811	-1.7713	-0.00091436	516.2161039943004	109.68	0.896	108.05	107.78	108.67	-1.63					35	16	3	0	0	0	0.027462	1	10073	10073		39.253	0	1	42601			6318	3261	5063	5072	7423	7423					-0.09366085834744808
EDPRLGDLSHP	11	Unmodified	_EDPRLGDLSHP_					0	0	0			REV__ENSG00000100926|ENST00000261789|TM9SF1	REV__ENSG00000100926|ENST00000261789|TM9SF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	618.3023681640625	2	618.304384	1234.59421	2.4867	0.0015375	-2.8987	-0.0017923	-0.41199	-0.00025473	618.3023307124392	136.26	0.82465	134.72	134.45	135.27	-1.5437					40	16	3	0	0	0	0.68757	1	13238	13238		33.922	1.1711	1	85440	+		6319	17460	5064	5073	7424	7424					-0.0136988033864327
EDPSLAGWFN	10	Unmodified	_EDPSLAGWFN_					0	0	0			REV__ENSG00000106397|ENST00000223127|PLOD3	REV__ENSG00000106397|ENST00000223127|PLOD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.8391723632812	2	568.256371	1134.49819	1.4761	0.00083879	4.098	0.0023287	5.5741	0.0031675	568.2584420840334	119.17	0.42168	119.17	118.96	119.38	0					14	8	3	0	0	0	0.027056	1	13650	13650		14.865	0	1	113220	+		6320	17800	5065	5074	7425	7425					-0.06368028178712848
EDPVEPNIF	9	Unmodified	_EDPVEPNIF_					0	0	0			REV__ENST00000397656.8_1_12:111066004-111085694:+|nuORF;REV__ENST00000478122.6_1_12:111052207-111066834:+|nuORF	REV__ENST00000397656.8_1_12:111066004-111085694:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.28076171875	2	530.253297	1058.49204	0.98223	0.00052083	-2.9358	-0.0015567	-1.9536	-0.0010359	530.2522354211618	156.62	0.40213	156.62	156.4	156.8	0					10	7	2	0	0	0	0.027441	1	18355	18355		58.782	25.266	1	17520	+		6321	23190;26404	5066	5075	7426	7426					-0.034865464102495025
EDPVRAAPAGR	11	Unmodified	_EDPVRAAPAGR_					0	0	0		ENST00000398061.5_1_21:45379519-45387977:+|nuORF	ENST00000398061.5_1_21:45379519-45387977:+|nuORF	ENST00000398061.5_1_21:45379519-45387977:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	569.8017578125	2	569.801811	1137.58907	-1.9391	-0.0011049	1.6565	0.0009439	-0.28254	-0.00016099	569.802665430611	38.437	0.89101	35.728	35.469	36.36	-2.7097					39	17	3	0	0	0	0.70142	1	1800	1800		29.17	0.020503	1	168250			6322	11363	5067	5076	7427	7427					0.025778605893947315
EDPVVPFLSH	10	Unmodified	_EDPVVPFLSH_					0	0	0			REV__ENSG00000186212|ENST00000334306|SOWAHB	REV__ENSG00000186212|ENST00000334306|SOWAHB	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.2567138671875	2	570.290214	1138.56587	0.34502	0.00019676	2.5747	0.0014683	2.9198	0.0016651	570.2913972029894	162.41	0.70747	162.41	161.82	162.53	0					25	13	3	0	0	0	0.026956	1	18996	18996		19.997	6.5427	1	38582	+		6323	22568	5068	5077	7428	7428					0.0021342175209611014
EDQAQCSLWG	10	Unmodified	_EDQAQCSLWG_					0	0	0			REV__ENST00000575944.1_1_17:1519839-1531078:-|nuORF	REV__ENST00000575944.1_1_17:1519839-1531078:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2752685546875	2	568.737488	1135.46042	0.12929	7.3529E-05	-3.3524	-0.0019066	-3.2231	-0.0018331	568.7354427657829	57.107	0.81953	57.107	56.702	57.522	0					41	18	3	0	0	0	0.026714	1	4738	4738		35.152	0	1	646310	+		6324	21302	5069	5078	7429	7429					-0.10188862435848023
EDQDDGPLSN	10	Unmodified	_EDQDDGPLSN_					0	0	0			REV__nc|ENSG00000163520|P98095|FBLN2	REV__nc|ENSG00000163520|P98095|FBLN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.8023681640625	2	545.220182	1088.42581	-0.7482	-0.00040794	-2.0314	-0.0011075	-2.7796	-0.0015155	545.2198041833431	53.575	0.30333	53.575	53.389	53.692	0					9	6	2	0	0	0	0.026464	1	4270	4270		66.962	5.99	1	175300	+		6325	20845	5070	5079	7430	7430					-0.11486407042934843
EDQDKPYACDI	11	Unmodified	_EDQDKPYACDI_					0	0	0		ENST00000407765.1_1_6:131505690-131506047:-|nuORF	ENST00000407765.1_1_6:131505690-131506047:-|nuORF	ENST00000407765.1_1_6:131505690-131506047:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	647.831298828125	2	648.774267	1295.53398	-0.60576	-0.000393	-4.3516	-0.0028232	-4.9573	-0.0032162	648.7710972131368	59.514	0.27016	59.514	59.377	59.647	0					10	6	2	0	0	0	0.025528	1	5152	5152		28.081	4.5588	1	349390			6326	11501	5071	5080	7431	7431					-0.1019635878403733
EDQDNNPQ	8	Unmodified	_EDQDNNPQ_					0	0	0		PPP1R3A|p.S649N|1|0.44|ENSG00000154415|chr7:113879146-113879146|C/T|missense_variant	PPP1R3A|p.S649N|1|0.44|ENSG00000154415|chr7:113879146-113879146|C/T|missense_variant	PPP1R3A|p.S649N|1|0.44|ENSG00000154415|chr7:113879146-113879146|C/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	480.2138671875	2	480.188685	958.362818	2.1379	0.0010266	1.6303	0.00078286	3.7682	0.0018094	480.1895359492828	112.09	0.39394	110.98	110.8	111.19	-1.1038					12	7	2	0	0	0	0.028476	1	8178	8178		34.173	0	1	8751.4			6327	15517	5072	5081	7432	7432					-0.11802928040333427
EDQDNNPQ	8	Unmodified	_EDQDNNPQ_					0	0	0		PPP1R3A|p.S649N|1|0.44|ENSG00000154415|chr7:113879146-113879146|C/T|missense_variant	PPP1R3A|p.S649N|1|0.44|ENSG00000154415|chr7:113879146-113879146|C/T|missense_variant	PPP1R3A|p.S649N|1|0.44|ENSG00000154415|chr7:113879146-113879146|C/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.21368408203125	2	480.188685	958.362818	0.2326	0.00011169	4.191	0.0020125	4.4236	0.0021241	480.19107046025675	112.45	0.40499	110.94	110.79	111.2	-1.5111					14	7	2	0	0	0	0.028476	1	10400	10400		49.442	15.926	1	15964			6328	15517	5072	5081	7433	7433					-0.11802928040333427
EDQDTAMMTI	10	2 Oxidation (M)	_EDQDTAM(Oxidation (M))M(Oxidation (M))TI_		EDQDTAM(1)M(1)TI		EDQDTAM(62)M(62)TI	0	0	2			REV__nc|ENSG00000107736|Q9H251-4|CDH23	REV__nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-MSMS	OvCa99_classI_Rep5	1	593.7327880859375	2	593.733754	1185.45295	1.0912	0.00064789	-3.3457	-0.0019864	-2.2544	-0.0013385	593.7316270500684	139.48	0.94559	139.48	139.17	140.12	0					41	19	3	0	0	0	0.44431	1	16276	16276		62.107	12.666	1	609230	+		6329	17855	5073	5082	7434	7434		413;414			-0.13235382818402286
EDQEMCHEF	9	Unmodified	_EDQEMCHEF_					0	0	0		nc|ENSG00000133710|Q9NQ38-3|SPINK5;ENSG00000133710|ENST00000256084|SPINK5;nc|ENSG00000133710|Q9NQ38-2|SPINK5	nc|ENSG00000133710|Q9NQ38-3|SPINK5	nc|ENSG00000133710|Q9NQ38-3|SPINK5	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.3307495117188	2	584.207706	1166.40086	1.8098	0.0010573	-1.9511	-0.0011399	-0.14138	-8.2596E-05	584.2076996288397	95.473	0.49455	95.473	95.161	95.656	0					17	11	3	0	0	0	0.027462	1	10438	10438		34.173	0	1	216460			6330	4234	5074	5083	7435	7435					-0.1756850144154214
EDQFTEQL	8	Unmodified	_EDQFTEQL_					0	0	0			REV__ENSG00000187105|ENST00000553558|HEATR4	REV__ENSG00000187105|ENST00000553558|HEATR4	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.2754821777344	2	505.227279	1008.44001	-1.807	-0.00091295	-2.0583	-0.0010399	-3.8653	-0.0019528	505.22625934021966	84.771	0.49957	83.225	82.95	83.449	-1.5462					13	9	3	0	0	0	0.028476	1	7313	7313		106.42	26.964	1	10580	+		6331	22631	5075	5084	7436	7436					-0.06387709823991372
EDQFTEQL	8	Unmodified	_EDQFTEQL_					0	0	0			REV__ENSG00000187105|ENST00000553558|HEATR4	REV__ENSG00000187105|ENST00000553558|HEATR4	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.2754821777344	2	505.227279	1008.44001	-1.5553	-0.00078578	-3.8212	-0.0019306	-5.3765	-0.0027163	505.22515861919663	84.887	0.78633	82.627	82.307	83.094	-2.261					33	15	3	0	0	0	0.028476	1	4988	4988		101.6	13.846	1	99402	+		6332	22631	5075	5084	7437	7437					-0.06387709823991372
EDQFVVAVIDN	11	Unmodified	_EDQFVVAVIDN_					0	0	0			REV__RAP1GAP|p.Y317Mfs*52|1|0.25|ENSG00000076864|chr1:21610170-21610171|-/GGCAT|frameshift_variant	REV__RAP1GAP|p.Y317Mfs*52|1|0.25|ENSG00000076864|chr1:21610170-21610171|-/GGCAT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	416.9036865234375	3	416.875071	1247.60338	-0.047393	-1.9757E-05	-0.59656	-0.00024869	-0.64395	-0.00026845	417.2097969146912	36.141	0.41351	36.141	36.074	36.487	0					13	8	2	0	0	0	0.025864	1	1876	1876		9.7451	0.098948	1	76088	+		6333	16999	5076	5085	7438	7438					-0.010515317729414164
EDQKEIKIE	9	Unmodified	_EDQKEIKIE_					0	0	0		nc|ENSG00000132912|Q9UJW0-2|DCTN4;ENSG00000132912|ENST00000447998|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4	nc|ENSG00000132912|Q9UJW0-2|DCTN4	nc|ENSG00000132912|Q9UJW0-2|DCTN4	MULTI-MSMS	OvCa9_classI_Rep3	3	566.298095703125	2	566.298236	1130.58192	-0.91483	-0.00051807	-0.010056	-5.6947E-06	-0.92489	-0.00052376	566.2978698656331	100.56	0.98025	98.952	98.518	99.498	-1.6053					67	19	5	0	0	0	0.16562	1	6845	6845		82.241	0.71551	1	1325600			6334	4183	5077	5086	7439	7439					0.021850831983556418
EDQLQQLHS	9	Unmodified	_EDQLQQLHS_					0	0	0		tr|A0A553SG42|A0A553SG42_NIACIYgaB-likeproteinOS=NialliacirculansOX=1397GN=CEQ21_10175PE=4SV=1	tr|A0A553SG42|A0A553SG42_NIACIYgaB-likeproteinOS=NialliacirculansOX=1397GN=CEQ21_10175PE=4SV=1	tr|A0A553SG42|A0A553SG42_NIACIYgaB-likeproteinOS=NialliacirculansOX=1397GN=CEQ21_10175PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.8152465820312	2	549.264727	1096.5149	-0.13609	-7.4747E-05	4.0133	0.0022044	3.8772	0.0021296	549.2657531597666	66.859	0.19582	63.369	63.247	63.442	-3.4902					5	3	2	0	0	0	0.027462	1	4881	4881		15.642	0	1	23158			6335	33116	5078	5087	7440	7440					-0.029495272927761107
EDQLSTWLTSL	11	Unmodified	_EDQLSTWLTSL_					0	0	0			REV__ENST00000489338.6_1_6:88125312-88173965:+|nuORF	REV__ENST00000489338.6_1_6:88125312-88173965:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	647.8219604492188	2	646.822075	1291.6296	1.8647	0.0012061	0.91465	0.00059162	2.7794	0.0017978	646.8226563548138	135.55	1.126	135.55	135.22	136.35	0					41	23	2	0	0	0	0.025363	1	15780	15780		30.569	0	1	2018600	+		6336	23614	5079	5088	7441	7441					-0.004552626014628913
EDQNEIVKTQL	11	Unmodified	_EDQNEIVKTQL_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	OvCa99_classI_Rep5	1	439.5628967285156	3	439.561263	1315.66196	3.6783	0.0016168	-0.28349	-0.00012461	3.3948	0.0014922	439.56103717711017	86.358	1.5977	86.358	86.073	87.671	0					93	38	4	0	0	0	0.54114	1	9134	9134		50.034	3.5767	1	4707900	+		6337	28906	5080	5089	7442	7442					0.01675524801521533
EDQNEIVKTQL	11	Unmodified	_EDQNEIVKTQL_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	439.561263	1315.66196	-1.1073	-0.00048671	3.9438	0.0017335	2.8365	0.0012468	439.5630978871081	88.915	0.14957	86.312	86.186	86.336	-2.6027	-0.023049	0.005364	NaN	50.034	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4938.1	+		6338	28906	5080	5089							0.01675524801521533
EDQQFEKPL	9	Unmodified	_EDQQFEKPL_					0	0	0			REV__ENSG00000117501|ENST00000367759|MROH9	REV__ENSG00000117501|ENST00000367759|MROH9	MULTI-SECPEP	OvCa9_classI_Rep3	3	566.8207397460938	2	567.277303	1132.54005	-0.076688	-4.3504E-05	3.5741	0.0020275	3.4974	0.001984	567.2789357575917	108.34	0.36109	107.14	106.96	107.32	-1.1978					10	6	2	0	0	0	0.027446	1	7730	7730		60.118	0	1	11787	+		6339	18354	5081	5090	7443	7443					-0.020914724902013404
EDQTSRNIP	9	Unmodified	_EDQTSRNIP_					0	0	0		ENSG00000221944|ENST00000408957|TIGD1	ENSG00000221944|ENST00000408957|TIGD1	ENSG00000221944|ENST00000408957|TIGD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.3094482421875	2	530.256902	1058.49925	-0.053917	-2.859E-05	1.0871	0.00057643	1.0332	0.00054784	530.7582421256106	46.778	2.17	46.778	46.242	48.412	0					92	49	4	0	0	0	0.027402	1	3530	3530		56.721	0	1	1777200			6340	9237	5082	5091	7444	7444					-0.027658138098104246
EDQVINALTI	10	Unmodified	_EDQVINALTI_					0	0	0			REV__tr|A0A553SJZ2|A0A553SJZ2_NIACIDNApolymeraseIIIsubunitalphaOS=NialliacirculansOX=1397GN=CEQ21_17785PE=3SV=1	REV__tr|A0A553SJZ2|A0A553SJZ2_NIACIDNApolymeraseIIIsubunitalphaOS=NialliacirculansOX=1397GN=CEQ21_17785PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	558.299560546875	2	558.300778	1114.587	0.64738	0.00036143	-2.8536	-0.0015932	-2.2062	-0.0012317	558.29900042177	109.51	1.3356	109.34	109.12	110.45	-0.17237					56	26	3	0	0	0	0.45822	1	10300	10300		60.118	1.8883	1	142080	+		6341	30059	5083	5092	7445	7445					0.034293870609417354
EDRAREQRRQL	11	Unmodified	_EDRAREQRRQL_					0	0	0		ENSG00000163945|ENST00000389851|UVSSA;nc|ENSG00000163945|Q2YD98-2|UVSSA	ENSG00000163945|ENST00000389851|UVSSA	ENSG00000163945|ENST00000389851|UVSSA	MULTI-MSMS	OvCa9_classI_Rep2	2	486.2638854980469	3	486.262433	1455.76547	-0.63684	-0.00030967	2.8704	0.0013958	2.2336	0.0010861	486.26373434904593	48.313	1.292	45.604	45.331	46.623	-2.7097					68	25	3	0	0	0	0.71831	1	3006	3006		23.378	0.81632	1	298430			6342	6383	5084	5093	7446	7446					0.055818697525410244
EDRAREQRRQL	11	Unmodified	_EDRAREQRRQL_					0	0	0		ENSG00000163945|ENST00000389851|UVSSA;nc|ENSG00000163945|Q2YD98-2|UVSSA	ENSG00000163945|ENST00000389851|UVSSA	ENSG00000163945|ENST00000389851|UVSSA	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	486.262433	1455.76547	-1.376	-0.00066909	3.5207	0.001712	2.1447	0.0010429	486.2641227597954	48.878	0.93575	45.77	45.553	46.489	-3.1077	0.08326	0.00067383	NaN	23.378	45	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	296000			6343	6383	5084	5093							0.055818697525410244
EDRCLLSI	8	Unmodified	_EDRCLLSI_					0	0	0		ENST00000372921.9_1_10:75148159-75156954:-|nuORF	ENST00000372921.9_1_10:75148159-75156954:-|nuORF	ENST00000372921.9_1_10:75148159-75156954:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.57696533203125	2	474.744585	947.474617	-0.44976	-0.00021352	0.0026548	1.2604E-06	-0.4471	-0.00021226	474.743146789785	77.579	1.9441	75.789	75.103	77.047	-1.7894					85	37	5	0	0	0	0.028476	1	6540	6540		27.882	0	1	170010			6344	10991	5085	5094	7447	7447					-0.001221652168737819
EDRGTPIN	8	Unmodified	_EDRGTPIN_					0	0	0		ENSG00000032219|ENST00000355431|ARID4A;ARID4A|p.V762Hfs*15|1|0.12|ENSG00000032219|chr14:58364372-58364373|-/CACCTTTTCACTAAAAAATTCAT|frameshift_variant;nc|ENSG00000054267|Q4LE39-4|ARID4B;ENST00000491632.5_1_1:235341091-235490234:-|nuORF;nc|ENSG00000054267|Q4LE39-3|ARID4B;nc|ENSG00000032219|P29374-3|ARID4A;nc|ENSG00000032219|P29374-2|ARID4A;nc|ENSG00000054267|Q4LE39-2|ARID4B;ARID4B|p.P1212Qfs*38|1|0.04|ENSG00000054267|chr1:235175203-235175213|GTAAACTTTGG/-|frameshift_variant;ENSG00000054267|ENST00000264183|ARID4B	ENSG00000032219|ENST00000355431|ARID4A	ENSG00000032219|ENST00000355431|ARID4A	MULTI-SECPEP	OvCa99_classI_Rep5	1	451.2726135253906	2	451.222331	900.430109	2.0514	0.00092562	-2.3384	-0.0010551	-0.28704	-0.00012952	451.2210787769	90.652	0.35467	90.652	90.462	90.816	0					18	8	3	0	0	0	0.028476	1	9728	9728		18.324	11.131	1	789180			6345	1069	5086	5095	7448	7448					-0.024088530387189167
EDRHIQLN	8	Unmodified	_EDRHIQLN_					0	0	0		tr|A0A7D6VNL5|A0A7D6VNL5_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13405PE=4SV=1	tr|A0A7D6VNL5|A0A7D6VNL5_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13405PE=4SV=1	tr|A0A7D6VNL5|A0A7D6VNL5_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13405PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.3145141601562	2	512.762155	1023.50976	1.9974	0.0010242	-0.031343	-1.6071E-05	1.966	0.0010081	513.2647198228677	95.619	0.20529	95.619	95.538	95.743	0					7	4	2	0	0	0	0.028476	1	10460	10460		44.117	23.17	1	57363			6346	34713	5087	5096	7449	7449					-0.001057863647247359
EDRHKEEF	8	Unmodified	_EDRHKEEF_					0	0	0			REV__tr|A0A553SJA2|A0A553SJA2_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16385PE=4SV=1	REV__tr|A0A553SJA2|A0A553SJA2_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16385PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2767333984375	2	545.25162	1088.48869	1.5475	0.00084376	2.2242	0.0012127	3.7717	0.0020565	545.2529416980389	127.48	0.2693	127.48	127.36	127.63	0					8	5	2	0	0	0	0.028476	1	14758	14758		42.396	0	1	37800	+		6347	29983	5088	5097	7450	7450					-0.05201796464257313
EDRIKIAL	8	Unmodified	_EDRIKIAL_					0	0	0			REV__tr|A0A7D6ZXW2|A0A7D6ZXW2_9CLOTEpoxyqueuosinereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14080PE=4SV=1	REV__tr|A0A7D6ZXW2|A0A7D6ZXW2_9CLOTEpoxyqueuosinereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14080PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	479.28985595703125	2	479.290017	956.565481	-1.152	-0.00055214	1.4231	0.00068206	0.27106	0.00012992	479.2905830575166	116.71	1.0385	116.58	116.27	117.31	-0.12869					45	20	3	0	0	0	0.59148	1	11172	11172		65.803	5.5092	1	230600	+		6348	32348	5089	5098	7451	7451					0.08546046822868902
EDRIKIAL	8	Unmodified	_EDRIKIAL_					0	0	0			REV__tr|A0A7D6ZXW2|A0A7D6ZXW2_9CLOTEpoxyqueuosinereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14080PE=4SV=1	REV__tr|A0A7D6ZXW2|A0A7D6ZXW2_9CLOTEpoxyqueuosinereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14080PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	479.2900390625	2	479.290017	956.565481	-0.33467	-0.0001604	0.85312	0.00040889	0.51845	0.00024849	479.29029988395797	117.55	0.94048	116.51	116.24	117.18	-1.0324					43	18	3	0	0	0	0.60331	1	8839	8839		63.306	5.495	1	249320	+		6349	32348	5089	5098	7452	7452					0.08546046822868902
EDRIPVMTL	9	Unmodified	_EDRIPVMTL_					0	0	0			REV__ENST00000469550.6_1_5:141000686-141000896:-|nuORF	REV__ENST00000469550.6_1_5:141000686-141000896:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.8078002929688	2	537.286617	1072.55868	0.32217	0.0001731	-0.53844	-0.0002893	-0.21627	-0.0001162	537.2863711678767	65.803	0.99702	63.108	62.52	63.517	-2.6958					51	19	3	0	0	0	0.027455	1	5098	5098		60.972	29.442	1	102990	+		6350	26244	5090	5099	7453	7453					0.025303658800112316
EDRKKDLLSL	10	Unmodified	_EDRKKDLLSL_					0	0	0			REV__tr|A0A553SGI9|A0A553SGI9_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10955PE=4SV=1	REV__tr|A0A553SGI9|A0A553SGI9_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10955PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	608.8509521484375	2	608.848427	1215.6823	0.74235	0.00045198	1.8792	0.0011442	2.6216	0.0015961	608.8494691803728	112.05	1.3269	110.54	110.26	111.59	-1.5111					53	25	3	0	0	0	0.45788	1	10354	10354		56.434	8.7765	1	185400	+		6351	29706	5091	5100	7454	7454					0.08308740252005009
EDRLAGAVI	9	Unmodified	_EDRLAGAVI_					0	0	0			REV__chr19:17219550-17219631|87|14.59|0.5|4.87|+|2|TE_info:L2c,L2c_dup130646,L2,LINE,donor,-,17219359,17219550|None,USE1|1	REV__chr19:17219550-17219631|87|14.59|0.5|4.87|+|2|TE_info:L2c,L2c_dup130646,L2,LINE,donor,-,17219359,17219550|None,USE1|1	MULTI-MSMS	OvCa99_classI_Rep5	1	472.2662353515625	2	472.263999	942.513445	1.4713	0.00069484	1.1179	0.00052793	2.5892	0.0012228	472.264441506628	101.3	1.1888	101.3	101.06	102.25	0					57	27	3	0	0	0	0.031958	2	11243	11243;11272		133.81	15.07	1	6204100	+		6352	15968	5092	5101	7455;7456	7455					0.03988883409135724
EDRLAGAVI	9	Unmodified	_EDRLAGAVI_					0	0	0			REV__chr19:17219550-17219631|87|14.59|0.5|4.87|+|2|TE_info:L2c,L2c_dup130646,L2,LINE,donor,-,17219359,17219550|None,USE1|1	REV__chr19:17219550-17219631|87|14.59|0.5|4.87|+|2|TE_info:L2c,L2c_dup130646,L2,LINE,donor,-,17219359,17219550|None,USE1|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.2658386230469	2	472.263999	942.513445	0.56153	0.00026519	-0.46868	-0.00022134	0.092853	4.3851E-05	472.2638726850155	102.88	1.412	100.68	100.41	101.82	-2.1994					57	26	4	0	0	0	0.24951	1	9288	9288		68.787	1.2932	1	226630	+		6353	15968	5092	5101	7457	7457					0.03988883409135724
EDRLDRGRE	9	Unmodified	_EDRLDRGRE_					0	0	0		ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	OvCa9_classI_Rep2	2	573.2863159179688	2	573.286525	1144.5585	-2.5831	-0.0014808	2.396	0.0013736	-0.18704	-0.00010723	573.2878155681369	34.545	1.0883	31.835	31.612	32.701	-2.7097					58	21	5	0	0	0	0.22621	1	1363	1363		71.877	15.156	1	313120			6354	5537	5093	5102	7458	7458					-0.007999177956207859
EDRLVFKDV	9	Unmodified	_EDRLVFKDV_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.7604370117188	2	560.803488	1119.59242	3.1688	0.0017771	-1.6285	-0.00091328	1.5403	0.0008638	560.8025982055	100.7	0.53578	100.7	100.44	100.98	0					21	12	2	0	0	0	0.027462	1	11156	11156		36.447	7.2972	1	552960	+		6355	22916	5094	5103	7459	7459					0.03741110643431966
EDRPQPQL	8	Unmodified	_EDRPQPQL_					0	0	0			REV__FPGS-CERCAM|2|fusion	REV__FPGS-CERCAM|2|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	491.75372314453125	2	491.751256	981.487959	-1.3383	-0.00065811	1.6768	0.00082458	0.33851	0.00016646	491.75190949103455	34.606	0.5133	34.606	34.304	34.818	0					25	10	4	0	0	0	0.67745	1	1694	1694		47.916	5.5195	1	200250	+		6356	21254	5095	5104	7460	7460					-0.0035259111328969084
EDRPQPQL	8	Unmodified	_EDRPQPQL_					0	0	0			REV__FPGS-CERCAM|2|fusion	REV__FPGS-CERCAM|2|fusion	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	491.751256	981.487959	-1.3383	-0.00065811	1.6768	0.00082458	0.33851	0.00016646	491.75190949103455	34.606	0.5133	34.606	34.304	34.818	0	0	0	NaN	47.916	25	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200250	+		6357	21254	5095	5104							-0.0035259111328969084
EDRQHPEPN	9	Unmodified	_EDRQHPEPN_					0	0	0		ENST00000408912.7_1_16:31473255-31473321:+|nuORF	ENST00000408912.7_1_16:31473255-31473321:+|nuORF	ENST00000408912.7_1_16:31473255-31473321:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	561.2803955078125	2	561.252151	1120.48975	0.086757	4.8692E-05	-1.5915	-0.00089323	-1.5047	-0.00084453	561.2513654838249	43.497	0.66	40.489	40.378	41.038	-3.0074					14	12	2	0	0	0	0.027462	1	2135	2135		19.997	0	1	12773			6358	11505	5096	5105	7461	7461					-0.06567582095317448
EDSECPVPVVL	11	Unmodified	_EDSECPVPVVL_					0	0	0		ENST00000360578.6_1_5:664230-664467:-|nuORF	ENST00000360578.6_1_5:664230-664467:-|nuORF	ENST00000360578.6_1_5:664230-664467:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.9392700195312	2	593.786647	1185.55874	0.15196	9.0229E-05	-2.5393	-0.0015078	-2.3873	-0.0014175	593.7852707474956	71.711	0.37006	71.711	71.507	71.877	0					11	8	2	0	0	0	0.02557	1	6920	6920		24.519	0	1	394730			6359	10775	5097	5106	7462	7462					-0.026616789106583383
EDSEDDMVQEV	11	Unmodified	_EDSEDDMVQEV_					0	0	0			REV__nc|ENSG00000169599|Q9UMS0-2|NFU1	REV__nc|ENSG00000169599|Q9UMS0-2|NFU1	MULTI-MSMS	OvCa99_classI_Rep5	1	648.2508544921875	2	648.250822	1294.48709	0.93182	0.00060405	-2.8332	-0.0018366	-1.9014	-0.0012326	648.2490595083813	141.72	0.84875	141.72	141.44	142.29	0					45	16	4	0	0	0	0.65063	1	16557	16557		40.058	1.3046	1	393690	+		6360	21472	5098	5107	7463	7463					-0.14837263125832578
EDSEVPFTEE	10	Unmodified	_EDSEVPFTEE_					0	0	0		ENSG00000140057|ENST00000267584|AK7;ENST00000554313.1_1_14:96864549-96887771:+|nuORF	ENSG00000140057|ENST00000267584|AK7	ENSG00000140057|ENST00000267584|AK7	MULTI-SECPEP	OvCa99_classI_Rep5	1	590.7888793945312	2	591.245866	1180.47718	0.4337	0.00025643	3.9465	0.0023333	4.3802	0.0025897	591.2480163474427	162.45	0.24879	162.45	162.28	162.53	0					7	4	2	0	0	0	0.026956	1	19052	19052		42.396	9.5837	1	31891			6361	4820	5099	5108	7464	7464					-0.10584083068874861
EDSFHKLILR	10	Unmodified	_EDSFHKLILR_					0	0	0		nc|ENSG00000182903|Q8TF20|ZNF721;ENSG00000182903|ENST00000511833|ZNF721;ENSG00000131127|ENST00000240499|ZNF141;ENSG00000186777|ENST00000419098|ZNF732	nc|ENSG00000182903|Q8TF20|ZNF721	nc|ENSG00000182903|Q8TF20|ZNF721	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.24969482421875	3	419.903183	1256.68772	0.41908	0.00017597	-3.0747	-0.0012911	-2.6556	-0.0011151	419.90188309360445	32.835	0.43651	32.835	32.602	33.039	0					15	8	2	0	0	0	0.027062	1	1463	1463		32.751	15.584	1	166650			6362	8038	5100	5109	7465	7465					0.06964463834469825
EDSFQFVL	8	Unmodified	_EDSFQFVL_					0	0	0		ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.3075866699219	2	492.737283	983.460012	2.277	0.001122	-2.7643	-0.0013621	-0.48727	-0.0002401	492.7355575000008	94.851	0.30185	94.851	94.69	94.992	0					10	6	2	0	0	0	0.028476	1	10355	10355		35.618	10.044	1	134050			6363	6504	5101	5110	7466	7466					-0.03237914093381278
EDSFQFVL	8	Unmodified	_EDSFQFVL_					0	0	0		ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	492.737283	983.460012	0.62955	0.0003102	-4.3881	-0.0021622	-3.7586	-0.001852	492.7353383997701	96.036	0.69709	95.007	94.764	95.461	-1.0281	0.031306	-0.00068209	NaN	35.618	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19317			6364	6504	5101	5110							-0.03237914093381278
EDSFQFVL	8	Unmodified	_EDSFQFVL_					0	0	0		ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	492.737283	983.460012	-1.0084	-0.00049688	-2.924	-0.0014407	-3.9324	-0.0019376	492.73573851809385	96.804	0.51772	94.976	94.775	95.293	-1.8286	-0.00064645	0.00076082	NaN	35.618	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21486			6365	6504	5101	5110							-0.03237914093381278
EDSFQFVL	8	Unmodified	_EDSFQFVL_					0	0	0		ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	492.737283	983.460012	1.1322	0.00055786	-5.9706	-0.002942	-4.8385	-0.0023841	492.73461520242734	97.449	0.66048	95.071	94.758	95.418	-2.3786	0.094495	-0.0022416	NaN	35.618	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30569			6366	6504	5101	5110							-0.03237914093381278
EDSIDLKH	8	Unmodified	_EDSIDLKH_					0	0	0			REV__ENSG00000013016|ENST00000322054|EHD3;REV__ENSG00000110047|ENST00000320631|EHD1	REV__ENSG00000013016|ENST00000322054|EHD3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.297607421875	2	478.737814	955.461075	-0.038844	-1.8596E-05	1.4282	0.00068375	1.3894	0.00066516	478.7382910982895	116.82	0.68305	115.45	115.19	115.88	-1.3645					20	12	2	0	0	0	0.028476	1	10917	10917		51.335	0	1	10826	+		6367	16503;17966	5102	5111	7467	7467					-0.018436997244634767
EDSKFVLAL	9	Unmodified	_EDSKFVLAL_					0	0	0			REV__tr|A0A7D7ADV5|A0A7D7ADV5_9CLOTTIGR03943familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00460PE=4SV=1	REV__tr|A0A7D7ADV5|A0A7D7ADV5_9CLOTTIGR03943familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00460PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.3053283691406	2	511.281857	1020.54916	1.6574	0.0008474	-2.3886	-0.0012213	-0.73123	-0.00037386	511.28054456324315	88.17	1.276	86.803	86.399	87.675	-1.3676					42	25	3	0	0	0	0.027433	1	7673	7673		64.207	21.811	1	61362	+		6368	32699	5103	5112	7468	7468					0.039709208661292905
EDSKTVDYSK	10	Unmodified	_EDSKTVDYSK_					0	0	0		tr|A0A553SNT2|A0A553SNT2_NIACIHelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_25130PE=4SV=1	tr|A0A553SNT2|A0A553SNT2_NIACIHelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_25130PE=4SV=1	tr|A0A553SNT2|A0A553SNT2_NIACIHelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_25130PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	585.7945556640625	2	586.2775	1170.54045	-0.56333	-0.00033027	-0.048768	-2.8592E-05	-0.6121	-0.00035886	586.2769023154985	65.22	0.38474	61.735	61.456	61.84	-3.4854					14	7	2	0	0	0	0.026674	1	4655	4655		40.058	13.011	1	19800			6369	33959	5104	5113	7469	7469					-0.038000975609975285
EDSKTVDYSK	10	Unmodified	_EDSKTVDYSK_					0	0	0		tr|A0A553SNT2|A0A553SNT2_NIACIHelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_25130PE=4SV=1	tr|A0A553SNT2|A0A553SNT2_NIACIHelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_25130PE=4SV=1	tr|A0A553SNT2|A0A553SNT2_NIACIHelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_25130PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	586.2775	1170.54045	-0.6466	-0.00037909	-1.1619	-0.0006812	-1.8085	-0.0010603	586.276532109625	64.311	0.57712	61.587	61.234	61.811	-2.7245	-0.11455	-5.6612E-05	NaN	32.751	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12715			6370	33959	5104	5113							-0.038000975609975285
EDSKTVDYSK	10	Unmodified	_EDSKTVDYSK_					0	0	0		tr|A0A553SNT2|A0A553SNT2_NIACIHelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_25130PE=4SV=1	tr|A0A553SNT2|A0A553SNT2_NIACIHelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_25130PE=4SV=1	tr|A0A553SNT2|A0A553SNT2_NIACIHelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_25130PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	586.2775	1170.54045	-0.16392	-9.6101E-05	-1.6895	-0.00099051	-1.8534	-0.0010866	586.2762484900023	64.776	0.30193	61.783	61.596	61.898	-2.9933	0.081178	-0.00067525	NaN	32.751	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5709.6			6371	33959	5104	5113							-0.038000975609975285
EDSLERALG	9	Unmodified	_EDSLERALG_					0	0	0			REV__ENSG00000132182|ENST00000254508|NUP210	REV__ENSG00000132182|ENST00000254508|NUP210	MULTI-MSMS	OvCa9_classI_Rep3	3	495.2493591308594	2	495.248546	988.482539	1.2613	0.00062465	-1.6665	-0.00082532	-0.40518	-0.00020066	495.2476222924242	123.74	0.97863	122.7	122.41	123.39	-1.0377					41	18	4	0	0	0	0.56889	1	9564	9564		35.618	3.6634	1	133150	+		6372	19058	5105	5114	7470	7470					-0.012163146957618665
EDSLERALG	9	Unmodified	_EDSLERALG_					0	0	0			REV__ENSG00000132182|ENST00000254508|NUP210	REV__ENSG00000132182|ENST00000254508|NUP210	MULTI-MATCH	OvCa9_classI_Rep2	2		2	495.248546	988.482539	0.22762	0.00011273	-0.78934	-0.00039092	-0.56172	-0.00027819	495.2480729976968	123.13	0.93632	122.91	122.56	123.5	-0.21803	0.1422	-2.2603E-05	NaN	35.618	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65933	+		6373	19058	5105	5114							-0.012163146957618665
EDSLERALG	9	Unmodified	_EDSLERALG_					0	0	0			REV__ENSG00000132182|ENST00000254508|NUP210	REV__ENSG00000132182|ENST00000254508|NUP210	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	495.248546	988.482539	-0.63667	-0.00031531	0.23687	0.00011731	-0.3998	-0.000198	495.24855946934025	124.08	1.1711	122.69	122.42	123.59	-1.3908	-0.077153	0.00099385	NaN	35.618	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110610	+		6374	19058	5105	5114							-0.012163146957618665
EDSTLKRF	8	Unmodified	_EDSTLKRF_					0	0	0			REV__tr|A0A553SRZ9|A0A553SRZ9_NIACIFAD-dependentmonooxygenaseOS=NialliacirculansOX=1397GN=CEQ21_02100PE=4SV=1	REV__tr|A0A553SRZ9|A0A553SRZ9_NIACIFAD-dependentmonooxygenaseOS=NialliacirculansOX=1397GN=CEQ21_02100PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.7597961425781	2	498.261456	994.50836	-0.23351	-0.00011635	-0.5577	-0.00027788	-0.79121	-0.00039423	498.2610994272217	78.826	1.4654	76.075	75.714	77.179	-2.7514					62	30	3	0	0	0	0.028476	1	6500	6500		23.042	0	1	917230	+		6375	30783	5106	5115	7471	7471					0.010885795465242154
EDSVYEEL	8	Unmodified	_EDSVYEEL_					0	0	0		tr|A0A553SNV8|A0A553SNV8_NIACIYlxRfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25295PE=4SV=1	tr|A0A553SNV8|A0A553SNV8_NIACIYlxRfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25295PE=4SV=1	tr|A0A553SNV8|A0A553SNV8_NIACIYlxRfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25295PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.31134033203125	2	492.213837	982.413122	0.25312	0.00012459	0.1265	6.2266E-05	0.37962	0.00018686	492.2138134670171	161.91	0.51038	161.91	161.72	162.23	0					15	9	2	0	0	0	0.028476	1	18988	18988		57.811	9.8957	1	21951			6376	33968	5107	5116	7472	7472					-0.07878818435176527
EDSYFARGL	9	Unmodified	_EDSYFARGL_					0	0	0		ENST00000556300.6_1_14:74417008-74425067:+|nuORF	ENST00000556300.6_1_14:74417008-74425067:+|nuORF	ENST00000556300.6_1_14:74417008-74425067:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.3336791992188	2	529.251089	1056.48762	1.2313	0.00065164	-0.63974	-0.00033858	0.59152	0.00031306	529.2505043627833	123.5	0.35881	122.46	122.31	122.67	-1.0377					9	6	2	0	0	0	0.027462	1	9518	9518		27.882	0	1	11627			6377	13657	5108	5117	7473	7473					-0.03836010833151704
EDSYLARFQ	9	Unmodified	_EDSYLARFQ_					0	0	0		nc|ENSG00000172782|Q8N9I5-2|FADS6;nc|ENSG00000172782|Q8N9I5|FADS6;ENSG00000172782|ENST00000612771|FADS6	nc|ENSG00000172782|Q8N9I5-2|FADS6	nc|ENSG00000172782|Q8N9I5-2|FADS6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.8092651367188	2	564.769645	1127.52474	0.025306	1.4292E-05	0.061282	3.461E-05	0.086588	4.8902E-05	564.7692958773349	95.282	0.85416	92.813	92.611	93.465	-2.4685					26	16	3	0	0	0	0.027462	1	8451	8451		45.952	0	1	46924			6378	7319	5109	5118	7474	7474					-0.033923392873930425
EDSYPYNPH	9	Unmodified	_EDSYPYNPH_					0	0	0			REV__nc|ENSG00000196139|P42330-2|AKR1C3	REV__nc|ENSG00000196139|P42330-2|AKR1C3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	561.2803955078125	2	561.230353	1120.44615	0.13265	7.4446E-05	1.0545	0.0005918	1.1871	0.00066624	561.7333262674393	43.864	0.5485	40.857	40.589	41.137	-3.0074					35	10	4	0	0	0	0.027462	1	2135	2135		21.96	0	1	49798	+		6379	22789	5110	5119	7475	7475					-0.10925191592468764
EDTCPVKELIS	11	Unmodified	_EDTCPVKELIS_					0	0	0			REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|333|2|anti-sense	REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|333|2|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	617.8078002929688	2	617.305203	1232.59585	1.4045	0.00086698	2.2553	0.0013922	3.6597	0.0022592	617.3064356399686	125.1	4.0538	125.1	123	127.05	0					171	90	2	0	0	0	0.66495	1	14559	14559		38.754	2.436	1	451310	+		6380	28500	5111	5120	7476	7476					-0.011140073648675752
EDTGLRVEL	9	Unmodified	_EDTGLRVEL_					0	0	0		WNK3|p.L1380Ffs*18|1|0.04|ENSG00000196632|chrX:54237426-54237427|-/G|frameshift_variant;nc|ENSG00000196632|Q9BYP7-3|WNK3;nc|ENSG00000196632|Q9BYP7-4|WNK3;nc|ENSG00000196632|Q9BYP7-2|WNK3;ENSG00000196632|ENST00000354646|WNK3	WNK3|p.L1380Ffs*18|1|0.04|ENSG00000196632|chrX:54237426-54237427|-/G|frameshift_variant	WNK3|p.L1380Ffs*18|1|0.04|ENSG00000196632|chrX:54237426-54237427|-/G|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	516.2736206054688	2	516.272021	1030.52949	1.2259	0.00063292	1.6655	0.00085987	2.8915	0.0014928	516.2727394663556	79.32	0.83333	79.32	79.037	79.87	0					54	20	4	0	0	0	0.2422	1	8074	8074		69.628	3.8245	1	12625000			6381	8637	5112	5121	7477	7477					0.01544544855391905
EDTGLRVEL	9	Unmodified	_EDTGLRVEL_					0	0	0		WNK3|p.L1380Ffs*18|1|0.04|ENSG00000196632|chrX:54237426-54237427|-/G|frameshift_variant;nc|ENSG00000196632|Q9BYP7-3|WNK3;nc|ENSG00000196632|Q9BYP7-4|WNK3;nc|ENSG00000196632|Q9BYP7-2|WNK3;ENSG00000196632|ENST00000354646|WNK3	WNK3|p.L1380Ffs*18|1|0.04|ENSG00000196632|chrX:54237426-54237427|-/G|frameshift_variant	WNK3|p.L1380Ffs*18|1|0.04|ENSG00000196632|chrX:54237426-54237427|-/G|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	516.272021	1030.52949	0.55527	0.00028667	-3.3668	-0.0017382	-2.8115	-0.0014515	516.270304596123	81.341	1.8256	79.692	78.665	80.491	-1.6485	0.17614	-0.0015531	NaN	69.628	102	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	394350			6382	8637	5112	5121							0.01544544855391905
EDTGLRVEL	9	Unmodified	_EDTGLRVEL_					0	0	0		WNK3|p.L1380Ffs*18|1|0.04|ENSG00000196632|chrX:54237426-54237427|-/G|frameshift_variant;nc|ENSG00000196632|Q9BYP7-3|WNK3;nc|ENSG00000196632|Q9BYP7-4|WNK3;nc|ENSG00000196632|Q9BYP7-2|WNK3;ENSG00000196632|ENST00000354646|WNK3	WNK3|p.L1380Ffs*18|1|0.04|ENSG00000196632|chrX:54237426-54237427|-/G|frameshift_variant	WNK3|p.L1380Ffs*18|1|0.04|ENSG00000196632|chrX:54237426-54237427|-/G|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	516.272021	1030.52949	-0.062849	-3.2447E-05	-2.0055	-0.0010354	-2.0684	-0.0010678	516.2707042079365	81.779	1.3478	79.457	79.007	80.355	-2.3226	-0.059591	-0.00014749	NaN	69.628	80	26	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	915420			6383	8637	5112	5121							0.01544544855391905
EDTIKLIK	8	Unmodified	_EDTIKLIK_					0	0	0		tr|A0A7D6VUT6|A0A7D6VUT6_9CLOTTranscription-repair-couplingfactorOS=ClostridiumintestinaleOX=36845GN=mfdPE=3SV=1	tr|A0A7D6VUT6|A0A7D6VUT6_9CLOTTranscription-repair-couplingfactorOS=ClostridiumintestinaleOX=36845GN=mfdPE=3SV=1	tr|A0A7D6VUT6|A0A7D6VUT6_9CLOTTranscription-repair-couplingfactorOS=ClostridiumintestinaleOX=36845GN=mfdPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	480.29241943359375	2	480.292225	958.569897	0.0078083	3.7502E-06	-0.024863	-1.1942E-05	-0.017055	-8.1914E-06	480.2920690065583	111	1.1828	110.86	110.58	111.77	-0.13961					60	23	4	0	0	0	0.57734	1	10458	10458		68.787	0	1	401970			6384	35199	5113	5122	7478	7478					0.0889551124580521
EDTIKLIK	8	Unmodified	_EDTIKLIK_					0	0	0		tr|A0A7D6VUT6|A0A7D6VUT6_9CLOTTranscription-repair-couplingfactorOS=ClostridiumintestinaleOX=36845GN=mfdPE=3SV=1	tr|A0A7D6VUT6|A0A7D6VUT6_9CLOTTranscription-repair-couplingfactorOS=ClostridiumintestinaleOX=36845GN=mfdPE=3SV=1	tr|A0A7D6VUT6|A0A7D6VUT6_9CLOTTranscription-repair-couplingfactorOS=ClostridiumintestinaleOX=36845GN=mfdPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	480.2926025390625	2	480.292225	958.569897	1.9432	0.00093331	-2.2557	-0.0010834	-0.31248	-0.00015008	480.29095784813535	111.84	1.4316	110.74	110.2	111.63	-1.1038					69	28	4	0	0	0	0.42649	1	8142	8142		84.916	5.4645	1	400640			6385	35199	5113	5122	7479	7479					0.0889551124580521
EDTLIEPRKL	10	Unmodified	_EDTLIEPRKL_					0	0	0			REV__ENSG00000135390|ENST00000394349|ATP5MC2	REV__ENSG00000135390|ENST00000394349|ATP5MC2	MULTI-SECPEP	OvCa9_classI_Rep2	2	607.31494140625	2	607.342978	1212.6714	-0.47074	-0.0002859	0.83435	0.00050674	0.36361	0.00022083	607.344173039046	106.79	1.0904	106.48	106.08	107.17	-0.30836					32	21	3	0	0	0	0.026658	1	9906	9906		28.081	0	1	33752	+		6386	19281	5114	5123	7480	7480					0.07357337877715509
EDTLRQETI	9	Unmodified	_EDTLRQETI_					0	0	0			REV__tr|A0A553SIV8|A0A553SIV8_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_15630PE=3SV=1	REV__tr|A0A553SIV8|A0A553SIV8_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_15630PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.2687377929688	2	552.78021	1103.54587	0.09147	5.0563E-05	-0.60455	-0.00033419	-0.51308	-0.00028362	552.7798926135717	75.131	1.1593	71.9	71.629	72.788	-3.2308					54	23	4	0	0	0	0.027462	1	5901	5901		37.812	0	1	382730	+		6387	29935	5115	5124	7481	7481					-0.0017637397852467984
EDTLRRQLT	9	Unmodified	_EDTLRRQLT_					0	0	0			REV__tr|A0A553ST87|A0A553ST87_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04610PE=4SV=1	REV__tr|A0A553ST87|A0A553ST87_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04610PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.2875366210938	2	566.309469	1130.60439	-0.23117	-0.00013092	2.9047	0.0016449	2.6735	0.001514	566.3110520301987	65.351	0.79465	65.351	65.15	65.945	0					38	19	3	0	0	0	0.027462	1	6025	6025		14.137	0	1	2670400	+		6388	30931	5116	5125	7482	7482					0.04430727386602484
EDTRLWAKN	9	Unmodified	_EDTRLWAKN_					0	0	0		ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;USP11|p.E403Gfs*17|1|0.07|ENSG00000102226|chrX:47241599-47241599|A/-|frameshift_variant	ENST00000469080.5_1_X:47092634-47106681:+|nuORF	ENST00000469080.5_1_X:47092634-47106681:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	566.821533203125	2	566.790912	1131.56727	-0.0040704	-2.307E-06	-2.187	-0.0012395	-2.191	-0.0012419	567.2904254720015	108.02	0.21066	106.82	106.69	106.9	-1.1978					5	3	2	0	0	0	0.027462	1	7703	7703		19.104	0	1	8732.6			6389	2230	5117	5126	7483	7483					0.006750558408612051
EDTSVVDEIN	10	Unmodified	_EDTSVVDEIN_					0	0	0		tr|A0A7D6VN41|A0A7D6VN41_9CLOTDUF58domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17355PE=4SV=1	tr|A0A7D6VN41|A0A7D6VN41_9CLOTDUF58domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17355PE=4SV=1	tr|A0A7D6VN41|A0A7D6VN41_9CLOTDUF58domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17355PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.815185546875	2	560.753858	1119.49316	1.7847	0.0010008	-0.52118	-0.00029226	1.2635	0.00070853	560.7534521938826	145.82	0.80614	145.82	145.32	146.13	0					26	16	2	0	0	0	0.026782	1	17089	17089		45.972	7.1661	1	54708			6390	34678	5118	5127	7484	7484					-0.06180376831957801
EDVALDIDTY	10	Unmodified	_EDVALDIDTY_					0	0	0			REV__ENSG00000034971|ENST00000037502|MYOC	REV__ENSG00000034971|ENST00000037502|MYOC	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.7974853515625	2	577.266601	1152.51865	2.2236	0.0012836	4.2017	0.0024255	6.4253	0.0037091	577.2689085158996	98.871	0.47122	98.871	98.683	99.154	0					17	11	3	0	0	0	0.026802	1	10920	10920		26.693	7.5894	1	448460	+		6391	16598	5119	5128	7485	7485					-0.05150902309560479
EDVEKITLT	9	Unmodified	_EDVEKITLT_					0	0	0		tr|A0A553SN01|A0A553SN01_NIACIDNA3'-5'helicaseOS=NialliacirculansOX=1397GN=CEQ21_23525PE=4SV=1	tr|A0A553SN01|A0A553SN01_NIACIDNA3'-5'helicaseOS=NialliacirculansOX=1397GN=CEQ21_23525PE=4SV=1	tr|A0A553SN01|A0A553SN01_NIACIDNA3'-5'helicaseOS=NialliacirculansOX=1397GN=CEQ21_23525PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.2907104492188	2	524.282054	1046.54956	0.28174	0.00014771	-1.7138	-0.00089852	-1.4321	-0.00075081	524.2807989065927	81.346	0.24548	81.346	81.248	81.493	0					14	5	3	0	0	0	0.027462	1	8380	8380		39.253	1.4413	1	464240			6392	33891	5120	5129	7486	7486					0.02814295795315047
EDVFPGHFI	9	Unmodified	_EDVFPGHFI_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.Y3462Tfs*16|1|0.49|ENSG00000086570|chr5:151525891-151525891|G/-|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.2772216796875	2	530.758549	1059.50255	0.24338	0.00012918	-1.017	-0.00053977	-0.77359	-0.00041059	530.7579177221353	86.453	0.73601	83.826	83.663	84.399	-2.6269					16	14	2	0	0	0	0.027456	1	7378	7378		30.504	0	1	24308			6393	1752	5121	5130	7487	7487					-0.02482518965143754
EDVFPLLAVG	10	Unmodified	_EDVFPLLAVG_					0	0	0			REV__nc|ENSG00000088930|Q9H0D6-2|XRN2	REV__nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.3094482421875	2	530.289682	1058.56481	-0.44909	-0.00023815	-4.4229	-0.0023454	-4.872	-0.0025836	530.2871671408134	48.533	0.82381	48.533	48.116	48.94	0					16	10	2	0	0	0	0.027005	1	3530	3530		60.972	0	1	503040	+		6394	17190	5122	5131	7488	7488					0.037872073831977104
EDVLQKGKP	9	Unmodified	_EDVLQKGKP_					0	0	0		ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	ENSG00000177992|ENST00000325643|SPATA31E1	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.7633361816406	2	507.284931	1012.55531	-1.5546	-0.00078863	-3.8579	-0.001957	-5.4125	-0.0027457	507.2819907162038	117.83	1.0432	117.68	117.39	118.43	-0.14755					40	20	3	0	0	0	0.027462	1	11269	11269		44.117	13.799	1	24351			6395	7726	5123	5132	7489	7489					0.04953439097664614
EDVPLRPP	8	Unmodified	_EDVPLRPP_					0	0	0		ENSG00000166450|ENST00000389286|PRTG	ENSG00000166450|ENST00000389286|PRTG	ENSG00000166450|ENST00000389286|PRTG	MULTI-SECPEP	OvCa99_classI_Rep5	1	462.7397155761719	2	461.753267	921.491981	-0.44589	-0.00020589	3.5092	0.0016204	3.0633	0.0014145	461.75342538711226	48.295	0.25126	48.295	48.204	48.455	0					7	5	2	0	0	0	0.028476	1	3534	3534		31.955	1.4512	1	67247			6396	6682	5124	5133	7490	7490					0.02809498380418063
EDVQFYEI	8	Unmodified	_EDVQFYEI_					0	0	0			REV__tr|A0A7D7A286|A0A7D7A286_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15790PE=3SV=1	REV__tr|A0A7D7A286|A0A7D7A286_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15790PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.33642578125	2	521.740022	1041.46549	1.1041	0.00057607	0.16332	8.521E-05	1.2675	0.00066128	521.739927997016	108.95	0.52399	108.95	108.76	109.28	0					16	11	2	0	0	0	0.028476	1	12367	12367		87.754	5.4493	1	103920	+		6397	32526	5125	5134	7491	7491					-0.05358235301559944
EDVRQKVL	8	Unmodified	_EDVRQKVL_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	OvCa9_classI_Rep2	2	493.7868347167969	2	493.785099	985.555644	0.62156	0.00030691	2.6882	0.0013274	3.3098	0.0016343	493.78628375291737	96.81	1.6281	95.851	95.082	96.711	-0.95857					66	32	4	0	0	0	0.65062	1	8742	8742		53.351	0	1	367800			6398	7356	5126	5135	7492	7492					0.06228858817530636
EDVRQKVL	8	Unmodified	_EDVRQKVL_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MATCH	OvCa9_classI_Rep3	3		2	493.785099	985.555644	-0.68932	-0.00034038	3.9297	0.0019404	3.2404	0.0016	493.78689252572883	97.701	1.569	95.942	95.209	96.778	-1.7595	0.044565	0.00081963	NaN	53.351	57	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	514700			6399	7356	5126	5135							0.06228858817530636
EDVVAHVVL	9	Unmodified	_EDVVAHVVL_					0	0	0			REV__nc|ENSG00000141576|Q96PX1-2|RNF157	REV__nc|ENSG00000141576|Q96PX1-2|RNF157	MULTI-MSMS	OvCa9_classI_Rep2	2	490.77398681640625	2	490.7742	979.533846	2.0698	0.0010158	-2.2674	-0.0011128	-0.19759	-9.697E-05	490.77300710457405	90.601	2.1684	89.299	88.879	91.048	-1.302					68	41	3	0	0	0	0.32337	1	8021	8021		60.294	2.4827	1	702090	+		6400	19750	5127	5136	7493	7493					0.04326054068940266
EDVYIRPK	8	Unmodified	_EDVYIRPK_					0	0	0		tr|A0A7D6VSU0|A0A7D6VSU0_9CLOTSulfate/molybdateABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14165PE=4SV=1	tr|A0A7D6VSU0|A0A7D6VSU0_9CLOTSulfate/molybdateABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14165PE=4SV=1	tr|A0A7D6VSU0|A0A7D6VSU0_9CLOTSulfate/molybdateABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14165PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.3025817871094	2	510.279649	1018.54475	2.1733	0.001109	-1.9197	-0.00097958	0.25364	0.00012943	510.27780630219127	96.794	1.5651	96.794	95.743	97.309	0					81	36	4	0	0	0	0.028476	1	10616	10616		23.042	0	1	1567600			6401	35056	5128	5137	7494	7494					0.03621456443238458
EDWLAGLCL	9	Unmodified	_EDWLAGLCL_					0	0	0			REV__nc|ENSG00000128791|Q9GZX9-2|TWSG1	REV__nc|ENSG00000128791|Q9GZX9-2|TWSG1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.8200988769531	2	510.24696	1018.47937	-0.45649	-0.00023292	2.4399	0.0012449	1.9834	0.001012	510.2479516649147	123.6	1.2518	122.24	121.95	123.2	-1.3666					31	24	2	0	0	0	0.027449	1	11725	11725		40.573	0	1	33349	+		6402	18870	5129	5138	7495	7495					-0.02913281074131646
EDWLEQVTEI	10	Unmodified	_EDWLEQVTEI_					0	0	0		ENSG00000198883|ENST00000535214|PNMA5	ENSG00000198883|ENST00000535214|PNMA5	ENSG00000198883|ENST00000535214|PNMA5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	420.92828369140625	3	421.203076	1260.5874	-1.1155	-0.00046987	3.4434	0.0014504	2.3278	0.0009805	421.2038132973199	70.587	0.14691	67.106	66.983	67.13	-3.4812					4	2	2	0	0	0	0.02649	1	5331	5331		65.157	8.525	1	7180			6403	8898	5130	5139	7496	7496					-0.03247238009839748
EDWLLMSSPL	10	Unmodified	_EDWLLMSSPL_					0	0	0		ENSG00000164181|ENST00000508821|ELOVL7	ENSG00000164181|ENST00000508821|ELOVL7	ENSG00000164181|ENST00000508821|ELOVL7	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.7730712890625	2	595.791732	1189.56891	1.9974	0.00119	-3.8452	-0.0022909	-1.8478	-0.0011009	596.2921977232719	116.55	0.49107	116.55	116.37	116.86	0					13	10	2	0	0	0	0.026915	1	13331	13331		27.882	12.24	1	100340			6404	6428	5131	5140	7497	7497					-0.01829071185397879
EDYEQIKVL	9	Unmodified	_EDYEQIKVL_					0	0	0		tr|A0A7D7ACM1|A0A7D7ACM1_9CLOTSporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19675PE=4SV=1	tr|A0A7D7ACM1|A0A7D7ACM1_9CLOTSporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19675PE=4SV=1	tr|A0A7D7ACM1|A0A7D7ACM1_9CLOTSporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19675PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	568.7936401367188	2	568.795329	1135.5761	-1.4092	-0.00080155	0.9119	0.00051868	-0.4973	-0.00028286	568.7956975700428	100.58	1.8837	99.753	99.212	101.1	-0.83052					109	37	4	0	0	0	0.055627	8	9239	9178;9189;9201;9214;9220;9226;9239;9246		115.49	0	1	589360			6405	36231	5132	5141	7498;7499;7500;7501;7502;7503;7504;7505	7504					0.01373984686665608
EDYEQIKVL	9	Unmodified	_EDYEQIKVL_					0	0	0		tr|A0A7D7ACM1|A0A7D7ACM1_9CLOTSporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19675PE=4SV=1	tr|A0A7D7ACM1|A0A7D7ACM1_9CLOTSporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19675PE=4SV=1	tr|A0A7D7ACM1|A0A7D7ACM1_9CLOTSporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19675PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	568.7944946289062	2	568.795329	1135.5761	-1.1905	-0.00067713	0.85566	0.00048669	-0.33481	-0.00019044	568.7957110838319	101.24	1.933	99.631	99.344	101.28	-1.6053					114	36	5	0	0	0	0.046778	9	6922	6900;6904;6910;6916;6922;6929;6935;6943;6948		120.87	0	1	1095500			6406	36231	5132	5141	7506;7507;7508;7509;7510;7511;7512;7513;7514	7510					0.01373984686665608
EDYEQIKVL	9	Unmodified	_EDYEQIKVL_					0	0	0		tr|A0A7D7ACM1|A0A7D7ACM1_9CLOTSporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19675PE=4SV=1	tr|A0A7D7ACM1|A0A7D7ACM1_9CLOTSporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19675PE=4SV=1	tr|A0A7D7ACM1|A0A7D7ACM1_9CLOTSporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19675PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	568.7958984375	2	568.795329	1135.5761	0.11878	6.7562E-05	-0.6787	-0.00038604	-0.55992	-0.00031848	568.7948465737188	101.85	1.8219	99.583	99.256	101.08	-2.2665					108	34	4	0	0	0	0.043101	6	9152	9144;9152;9164;9176;9189;9202		124.08	10.888	1	1105800			6407	36231	5132	5141	7515;7516;7517;7518;7519;7520	7516					0.01373984686665608
EDYFEFRWSPV	11	Unmodified	_EDYFEFRWSPV_					0	0	0		ENST00000556883.1_1_14:93650616-93651154:-|nuORF	ENST00000556883.1_1_14:93650616-93651154:-|nuORF	ENST00000556883.1_1_14:93650616-93651154:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.2691650390625	3	492.226103	1473.65648	-0.76973	-0.00037888	-1.3497	-0.00066438	-2.1195	-0.0010433	492.22542112622295	45.373	0.83435	42.335	42.127	42.961	-3.0385					36	15	3	0	0	0	0.02625	1	2314	2314		18.531	0	1	87442			6408	13675	5133	5142	7521	7521					-0.0614015399028176
EDYHLSLL	8	Unmodified	_EDYHLSLL_					0	0	0			REV__ENST00000530859.1_1_11:108029671-108040846:-|nuORF	REV__ENST00000530859.1_1_11:108029671-108040846:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.298583984375	2	495.250557	988.486562	0.73006	0.00036156	-4.4388	-0.0021983	-3.7087	-0.0018367	495.24757575752443	89.659	1.0464	87.084	86.704	87.75	-2.575					31	20	2	0	0	0	0.028476	1	7706	7706		57.811	0	1	124840	+		6409	20156	5134	5143	7522	7522					-0.008142252020206797
EDYNKMLIF	9	Unmodified	_EDYNKMLIF_					0	0	0		tr|A0A7D6W127|A0A7D6W127_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02170PE=4SV=1	tr|A0A7D6W127|A0A7D6W127_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02170PE=4SV=1	tr|A0A7D6W127|A0A7D6W127_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02170PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.772705078125	2	586.78645	1171.55835	1.4701	0.00086264	-3.9396	-0.0023117	-2.4695	-0.001449	586.7841532606258	127.34	1.0388	127.34	127.05	128.09	0					54	22	3	0	0	0	0.027447	1	14717	14717		39.253	0	1	439150			6410	35397	5135	5144	7523	7523					-0.02057053839848777
EDYQPPPTL	9	Unmodified	_EDYQPPPTL_					0	0	0			REV__ENSG00000171729|ENST00000376008|TMEM51	REV__ENSG00000171729|ENST00000376008|TMEM51	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.3070068359375	2	530.253297	1058.49204	-0.49058	-0.00026013	4.2379	0.0022472	3.7473	0.001987	530.2549469437015	54.87	0.17394	54.87	54.761	54.935	0					5	3	2	0	0	0	0.027353	1	4452	4452		82.241	2.3013	1	115200	+		6411	21641	5136	5145	7524	7524					-0.03486546410226765
EDYQPPPTL	9	Unmodified	_EDYQPPPTL_					0	0	0			REV__ENSG00000171729|ENST00000376008|TMEM51	REV__ENSG00000171729|ENST00000376008|TMEM51	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.253297	1058.49204	-1.2187	-0.00064621	3.8103	0.0020204	2.5917	0.0013742	530.2552973517155	57.979	0.8051	55.187	54.972	55.777	-2.792	0.16634	-2.3777E-05	NaN	82.241	18	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16570	+		6412	21641	5136	5145							-0.03486546410226765
EEAAARQPQIQ	11	Unmodified	_EEAAARQPQIQ_					0	0	0		ENST00000485537.1_1_2:113239998-113240729:+|nuORF	ENST00000485537.1_1_2:113239998-113240729:+|nuORF	ENST00000485537.1_1_2:113239998-113240729:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	413.8944396972656	3	414.214198	1239.62076	0.59123	0.0002449	2.318	0.00096017	2.9093	0.0012051	414.21618256998346	30.097	0.30143	30.097	29.885	30.186	0					7	5	2	0	0	0	0.02557	1	1118	1118		21.78	0	1	7792.1			6413	12612	5137	5146	7525	7525					0.010538085527059593
EEACKKRV	8	Unmodified	_EEACKKRV_					0	0	0			REV__ENSG00000085832|ENST00000371733|EPS15	REV__ENSG00000085832|ENST00000371733|EPS15	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.7575988769531	2	481.758027	961.5015	0.27146	0.00013078	1.0669	0.00051401	1.3384	0.00064479	481.75833741211454	38.208	1.6368	35.282	34.957	36.594	-2.9264					68	32	3	0	0	0	0.73626	1	1462	1462		33.516	3.0119	1	143150	+		6414	17141	5138	5147	7526	7526					0.01920943394304686
EEADSVTLMTI	11	Unmodified	_EEADSVTLMTI_					0	0	0		tr|A0A7D7A2H7|A0A7D7A2H7_9CLOTATP-dependentDNAhelicaseOS=ClostridiumintestinaleOX=36845GN=pcrAPE=3SV=1	tr|A0A7D7A2H7|A0A7D7A2H7_9CLOTATP-dependentDNAhelicaseOS=ClostridiumintestinaleOX=36845GN=pcrAPE=3SV=1	tr|A0A7D7A2H7|A0A7D7A2H7_9CLOTATP-dependentDNAhelicaseOS=ClostridiumintestinaleOX=36845GN=pcrAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	604.7879028320312	2	604.789386	1207.56422	1.2772	0.00077244	-3.5827	-0.0021668	-2.3055	-0.0013943	604.7871279829726	28.54	0.91342	25.831	25.638	26.552	-2.7097					35	19	2	0	0	0	0.72516	1	603	603		13.454	1.2472	1	52739			6415	36079	5139	5148	7527	7527					-0.03126000118800221
EEAERKGGPP	10	Unmodified	_EEAERKGGPP_					0	0	0		C2CD2|p.A203Dfs*23|1|0.05|ENSG00000157617|chr21:41918217-41918218|-/AGGCCCCTGGGAAGCCCCCCAGACAT|frameshift_variant;nc|ENSG00000157617|Q9Y426-3|C2CD2;ENSG00000157617|ENST00000380486|C2CD2	C2CD2|p.A203Dfs*23|1|0.05|ENSG00000157617|chr21:41918217-41918218|-/AGGCCCCTGGGAAGCCCCCCAGACAT|frameshift_variant	C2CD2|p.A203Dfs*23|1|0.05|ENSG00000157617|chr21:41918217-41918218|-/AGGCCCCTGGGAAGCCCCCCAGACAT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.31884765625	2	535.26727	1068.51999	-2.0086	-0.0010751	2.6996	0.001445	0.69102	0.00036988	535.2688042953274	54.114	0.59816	51.3	50.975	51.573	-2.8139					14	11	2	0	0	0	0.026826	1	3723	3723		52.937	13.684	1	19433			6416	166	5140	5149	7528	7528					-0.01153223430151229
EEAFFNTILP	10	Unmodified	_EEAFFNTILP_					0	0	0		ENSG00000124701|ENST00000244669|APOBEC2	ENSG00000124701|ENST00000244669|APOBEC2	ENSG00000124701|ENST00000244669|APOBEC2	MULTI-MSMS	OvCa99_classI_Rep5	1	590.7987670898438	2	590.797872	1179.58119	1.1888	0.00070233	1.9887	0.0011749	3.1775	0.0018773	590.7985778833332	138.52	3.6805	138.52	137.91	141.59	0					181	76	4	0	0	0	0.48198	1	16213	16213		56.721	5.5284	1	227430			6417	3672	5141	5150	7529	7529					-0.0014171145069212798
EEAFRLYEL	9	Unmodified	_EEAFRLYEL_					0	0	0		ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	MULTI-MSMS	OvCa9_classI_Rep4_	4	585.294921875	2	585.295496	1168.57644	-0.608	-0.00035586	-0.35096	-0.00020542	-0.95896	-0.00056127	585.2953253508418	116.4	1.3841	115.03	114.6	115.98	-1.3645					51	26	3	0	0	0	0.13504	1	10871	10871		87.696	21.267	1	95284			6418	6326	5142	5151	7530	7530					-0.001105955934690428
EEAFRLYEL	9	Unmodified	_EEAFRLYEL_					0	0	0		ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	MULTI-MATCH	OvCa9_classI_Rep2	2		2	585.295496	1168.57644	-0.70186	-0.0004108	0.36698	0.00021479	-0.33488	-0.00019601	585.2956279131442	115.36	1.0377	115.24	114.95	115.98	-0.11777	0.11684	-0.00039649	NaN	87.696	42	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76644			6419	6326	5142	5151							-0.001105955934690428
EEAFRLYEL	9	Unmodified	_EEAFRLYEL_					0	0	0		ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	MULTI-MATCH	OvCa9_classI_Rep3	3		2	585.295496	1168.57644	-1.9431	-0.0011373	1.4207	0.00083154	-0.52235	-0.00030573	585.2961593261896	116.14	1.0372	115.1	114.85	115.89	-1.0414	-0.025596	0.00083701	NaN	87.696	42	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90186			6420	6326	5142	5151							-0.001105955934690428
EEAKEALLQA	10	Unmodified	_EEAKEALLQA_					0	0	0		ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	MULTI-MSMS	OvCa99_classI_Rep5	1	551.7932739257812	2	551.292953	1100.57135	2.0909	0.0011527	-4.2955	-0.0023681	-2.2046	-0.0012154	551.7907091173909	84.879	1.3268	84.879	84.135	85.462	0					95	31	5	0	0	0	0.33376	1	8897	8897		76.774	1.7308	1	4478200			6421	5327	5143	5152	7531	7531					0.025091005438980574
EEAKTIIEL	9	Unmodified	_EEAKTIIEL_					0	0	0			REV__nc|ENSG00000085831|Q5SRH9|TTC39A	REV__nc|ENSG00000085831|Q5SRH9|TTC39A	MULTI-MSMS	OvCa9_classI_Rep3	3	523.2909545898438	2	523.292422	1044.57029	-2.7103	-0.0014183	2.8048	0.0014677	0.094546	4.9475E-05	523.2937325019216	142.01	1.2384	141	140.73	141.97	-1.0106					63	24	3	0	0	0	0.16264	1	11769	11769		82.75	3.0379	1	67260	+		6422	28745	5144	5153	7532	7532					0.04978886175013031
EEAKTIIEL	9	Unmodified	_EEAKTIIEL_					0	0	0			REV__nc|ENSG00000085831|Q5SRH9|TTC39A	REV__nc|ENSG00000085831|Q5SRH9|TTC39A	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	523.292422	1044.57029	-2.7103	-0.0014183	2.8048	0.0014677	0.094546	4.9475E-05	523.2937325019216	142.01	1.2384	141	140.73	141.97	-1.0106	-0.099267	0.00125	NaN	82.75	63	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67260	+		6423	28745	5144	5153							0.04978886175013031
EEALTALGKL	10	Unmodified	_EEALTALGKL_					0	0	0		ENST00000497952.5_1_22:50685106-50686347:-|nuORF;ENST00000477814.5_1_22:50684197-50686750:-|nuORF;ENST00000497036.5_1_22:50684150-50687609:-|nuORF;ENST00000415993.5_1_22:50683938-50688578:-|nuORF;nc|ENSG00000100429|Q969S8-2|HDAC10;nc|ENSG00000100429|Q969S8-4|HDAC10;ENSG00000100429|ENST00000216271|HDAC10	ENST00000497952.5_1_22:50685106-50686347:-|nuORF	ENST00000497952.5_1_22:50685106-50686347:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.2890014648438	2	522.800414	1043.58628	-1.5745	-0.00082315	-1.17	-0.0006117	-2.7445	-0.0014349	522.8002530580593	95.442	1.5654	92.973	92.561	94.127	-2.4685					78	30	4	0	0	0	0.026653	1	8488	8488		41.427	3.6151	1	184500			6424	2068	5145	5154	7533	7533					0.06622592411895312
EEAPNVFQL	9	Unmodified	_EEAPNVFQL_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.M3578Ifs*3|1|0.03|ENSG00000048707|chr1:12369624-12369625|-/TATAT|frameshift_variant	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.794677734375	2	523.761289	1045.50803	-0.85138	-0.00044592	-2.2586	-0.001183	-3.11	-0.0016289	523.7599014202835	53.796	0.39948	53.796	53.609	54.008	0					14	9	2	0	0	0	0.027411	1	4295	4295		45.972	10.354	1	341960			6425	1159	5146	5155	7534	7534					-0.01290840173351171
EEAQVEAKLQ	10	Unmodified	_EEAQVEAKLQ_					0	0	0			REV__ENST00000510850.1_2_5:175607300-175612115:-|nuORF	REV__ENST00000510850.1_2_5:175607300-175612115:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.2806396484375	2	572.79586	1143.57717	-1.0652	-0.00061012	3.4243	0.0019614	2.3592	0.0013513	572.7981640668289	37	0.27402	37	36.885	37.159	0					7	5	2	0	0	0	0.026895	1	1993	1993		87.696	18.069	1	35144	+		6426	26947	5147	5156	7535	7535					0.011121990555693628
EEARSQANQ	9	Unmodified	_EEARSQANQ_					0	0	0		ENST00000518253.5_1_6:90312741-90340720:+|nuORF;nc|ENSG00000135299|Q9Y2G4-4|ANKRD6;nc|ENSG00000135299|Q9Y2G4-1|ANKRD6;nc|ENSG00000135299|Q9Y2G4-3|ANKRD6;ENSG00000135299|ENST00000339746|ANKRD6	ENST00000518253.5_1_6:90312741-90340720:+|nuORF	ENST00000518253.5_1_6:90312741-90340720:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.3255004882812	2	516.738877	1031.4632	-0.39214	-0.00020264	-1.5755	-0.00081411	-1.9676	-0.0010167	516.7379783826722	83.938	0.53763	81.677	81.39	81.927	-2.261					17	11	2	0	0	0	0.027418	1	4841	4841		44.377	12.847	1	41682			6427	4362	5148	5157	7536	7536					-0.05127270986668009
EEASALLLED	10	Unmodified	_EEASALLLED_					0	0	0		HECW1|p.S777Rfs*17|1|0.57|ENSG00000002746|chr7:43445502-43445524|GCGGGCACGTGGAAAGAAGCCCG/-|frameshift_variant;nc|ENSG00000002746|Q76N89-2|HECW1;ENSG00000002746|ENST00000395891|HECW1	HECW1|p.S777Rfs*17|1|0.57|ENSG00000002746|chr7:43445502-43445524|GCGGGCACGTGGAAAGAAGCCCG/-|frameshift_variant	HECW1|p.S777Rfs*17|1|0.57|ENSG00000002746|chr7:43445502-43445524|GCGGGCACGTGGAAAGAAGCCCG/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	545.2708740234375	2	545.269144	1088.52373	2.6425	0.0014409	4.1283	0.002251	6.7708	0.0036919	545.2713260495149	89.377	2.2131	89.377	88.922	91.135	0					112	54	4	0	0	0	0.55359	1	9514	9514		47.657	1.6851	1	16166000			6428	813	5149	5158	7537	7537					-0.016985984469329196
EECREDLEKL	10	Unmodified	_EECREDLEKL_					0	0	0			REV__ENSG00000075539|ENST00000358350|FRYL	REV__ENSG00000075539|ENST00000358350|FRYL	MULTI-MSMS	OvCa99_classI_Rep5	1	632.3002319335938	2	632.29791	1262.58127	0.079529	5.0286E-05	-0.34102	-0.00021563	-0.26149	-0.00016534	632.2976250278024	51.525	0.96817	51.525	51.291	52.259	0					54	22	3	0	0	0	0.13794	1	4003	4003		104.01	6.4169	1	7482600	+		6429	16974	5150	5159	7538	7538					-0.03952079513010176
EECVEYQKI	9	Unmodified	_EECVEYQKI_					0	0	0		ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	MULTI-MSMS	OvCa99_classI_Rep5	1	570.7644653320312	2	570.765714	1139.51688	-0.68727	-0.00039227	-2.8463	-0.0016245	-3.5335	-0.0020168	570.7639375463239	41.921	5.4029	41.921	39.711	45.114	0					302	122	5	0	0	0	0.42676	1	2644	2644		49.442	5.0644	1	2972500			6430	4764	5151	5160	7539	7539					-0.04730234599173855
EECVRRGQP	9	Unmodified	_EECVRRGQP_					0	0	0			REV__ENST00000546793.1_1_12:53438990-53439816:-|nuORF	REV__ENST00000546793.1_1_12:53438990-53439816:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3251342773438	2	537.261465	1072.50838	0.4767	0.00025611	-1.6366	-0.00087929	-1.1599	-0.00062318	537.260475857077	66.761	0.72125	66.761	66.452	67.173	0					42	17	3	0	0	0	0.027447	1	6200	6200		39.253	6.4404	1	981350	+		6431	27427	5152	5161	7540	7540					-0.024977437251209267
EEDEMDIE	8	Unmodified	_EEDEMDIE_					0	0	0			REV__ENST00000556274.5_1_14:92547307-92555106:-|nuORF	REV__ENST00000556274.5_1_14:92547307-92555106:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.8164978027344	2	505.186962	1008.35937	-1.632	-0.00082448	2.9673	0.0014991	1.3353	0.00067458	505.1883162316617	108.88	0.31209	107.15	106.92	107.23	-1.7256					7	5	2	0	0	0	0.028476	1	9987	9987		38.806	5.9937	1	13809	+		6432	15686	5153	5162	7541	7541					-0.14447358929214715
EEDEMDIE	8	Unmodified	_EEDEMDIE_					0	0	0			REV__ENST00000556274.5_1_14:92547307-92555106:-|nuORF	REV__ENST00000556274.5_1_14:92547307-92555106:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	505.186962	1008.35937	-0.36427	-0.00018402	1.5205	0.00076815	1.1563	0.00058413	505.18736749900637	108.2	0.42068	107	106.74	107.17	-1.1978	-0.076998	-0.00094343	NaN	38.806	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12215	+		6433	15686	5153	5162							-0.14447358929214715
EEDFFNYI	8	Unmodified	_EEDFFNYI_					0	0	0		tr|A0A7D6ZI67|A0A7D6ZI67_9CLOTLysRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03055PE=3SV=1	tr|A0A7D6ZI67|A0A7D6ZI67_9CLOTLysRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03055PE=3SV=1	tr|A0A7D6ZI67|A0A7D6ZI67_9CLOTLysRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03055PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.293701171875	2	538.732197	1075.44984	1.9173	0.0010329	2.4353	0.001312	4.3526	0.0023449	538.7333396358775	96.8	0.46674	96.8	96.584	97.05	0					16	10	2	0	0	0	0.028476	1	10610	10610		53.351	3.9099	1	413680			6434	35606	5154	5163	7542	7542					-0.0848652181862235
EEDIEPETL	9	Unmodified	_EEDIEPETL_					0	0	0			REV__PRUNE2|p.V2237Cfs*11|1|0.06|ENSG00000106772|chr9:76705569-76705570|-/T|frameshift_variant	REV__PRUNE2|p.V2237Cfs*11|1|0.06|ENSG00000106772|chr9:76705569-76705570|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.3037109375	2	537.745502	1073.47645	-0.94461	-0.00050796	-2.1129	-0.0011362	-3.0575	-0.0016442	537.7441614471603	90.831	0.46201	88.255	88.058	88.52	-2.575					15	8	2	0	0	0	0.027462	1	7822	7822		55.504	19.886	1	33551	+		6435	17824	5155	5164	7543	7543					-0.05734877717918607
EEDIIIIGLN	10	Unmodified	_EEDIIIIGLN_					0	0	0			REV__tr|A0A553SP83|A0A553SP83_NIACIPrimosomalproteinN'OS=NialliacirculansOX=1397GN=priAPE=3SV=1	REV__tr|A0A553SP83|A0A553SP83_NIACIPrimosomalproteinN'OS=NialliacirculansOX=1397GN=priAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.8113403320312	2	564.810979	1127.6074	1.1343	0.00064069	-1.2378	-0.00069912	-0.10345	-5.8432E-05	564.8100500057338	109.48	1.6202	107.75	107.38	109	-1.7256					83	30	4	0	0	0	0.48198	1	10091	10091		56.721	7.185	1	731720	+		6436	30510	5156	5165	7544	7544					0.04870557720778379
EEDLMILPF	9	Unmodified	_EEDLMILPF_					0	0	0		tr|A0A7D6ZT00|A0A7D6ZT00_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18075PE=4SV=1	tr|A0A7D6ZT00|A0A7D6ZT00_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18075PE=4SV=1	tr|A0A7D6ZT00|A0A7D6ZT00_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18075PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.8273315429688	2	553.775551	1105.53655	2.0044	0.00111	3.7696	0.0020875	5.7739	0.0031975	553.7778509734417	85.41	0.33324	85.41	85.211	85.544	0					9	7	2	0	0	0	0.027456	1	8970	8970		47.916	16.386	1	257750			6437	35746	5157	5166	7545	7545					-0.011998585884157364
EEDVRDPPV	9	Unmodified	_EEDVRDPPV_					0	0	0			REV__PHKA1|p.R1066Ifs*45|1|0.07|ENSG00000067177|chrX:72593150-72593151|-/ATTCGACCCAGCAATCCCATTACTAGGTA|frameshift_variant	REV__PHKA1|p.R1066Ifs*45|1|0.07|ENSG00000067177|chrX:72593150-72593151|-/ATTCGACCCAGCAATCCCATTACTAGGTA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.810791015625	2	528.253828	1054.4931	1.5909	0.0008404	-0.88827	-0.00046923	0.70264	0.00037117	528.2532028371039	127.91	0.55482	127.91	127.58	128.14	0					13	11	2	0	0	0	0.027462	1	14788	14788		37.159	0	1	41164	+		6438	16830	5158	5167	7546	7546					-0.03196332041329697
EEDVRPIFWA	10	Unmodified	_EEDVRPIFWA_					0	0	0		ENSG00000177000|ENST00000376590|MTHFR;nc|ENSG00000177000|P42898-2|MTHFR	ENSG00000177000|ENST00000376590|MTHFR	ENSG00000177000|ENST00000376590|MTHFR	MULTI-SECPEP	OvCa99_classI_Rep5	1	631.6334228515625	2	631.31422	1260.61389	2.2581	0.0014256	-1.592	-0.0010051	0.66606	0.00042049	631.3130824118882	80.709	2.6272	80.709	79.474	82.101	0					92	63	2	0	0	0	0.026881	1	8485	8485		25.574	0	1	1104900			6439	7649	5159	5168	7547	7547					-0.005995043278744561
EEEDHKII	8	Unmodified	_EEEDHKII_					0	0	0		tr|A0A7D6ZS84|A0A7D6ZS84_9CLOTEndonucleaseMutS2OS=ClostridiumintestinaleOX=36845GN=mutS2PE=3SV=1	tr|A0A7D6ZS84|A0A7D6ZS84_9CLOTEndonucleaseMutS2OS=ClostridiumintestinaleOX=36845GN=mutS2PE=3SV=1	tr|A0A7D6ZS84|A0A7D6ZS84_9CLOTEndonucleaseMutS2OS=ClostridiumintestinaleOX=36845GN=mutS2PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	506.7522888183594	2	506.750921	1011.48729	-0.020809	-1.0545E-05	-0.076735	-3.8886E-05	-0.097544	-4.9431E-05	506.75083161118357	68.97	1.1064	68.97	68.692	69.798	0					55	26	3	0	0	0	0.47599	1	6532	6532		79.939	8.5613	1	9251200			6440	35731	5160	5169	7548	7548					-0.017994305530010024
EEEEALAQQ	9	Unmodified	_EEEEALAQQ_					0	0	0		ENST00000369617.8_1_1:113933414-114092146:+|nuORF	ENST00000369617.8_1_1:113933414-114092146:+|nuORF	ENST00000369617.8_1_1:113933414-114092146:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.2947387695312	2	523.735468	1045.45638	-0.22491	-0.00011779	0.32388	0.00016963	0.09897	5.1834E-05	523.7354100373819	64.499	1.0668	61.02	60.779	61.846	-3.4793					33	21	2	0	0	0	0.027108	1	4683	4683		115.49	8.4865	1	32954			6441	10901	5161	5170	7549	7549					-0.06452628657916648
EEEEEEMVPA	10	Unmodified	_EEEEEEMVPA_					0	0	0		ENST00000540112.1_3_11:60703176-60704376:+|nuORF;nc|ENSG00000006118|Q24JP5-4|TMEM132A;ENSG00000006118|ENST00000453848|TMEM132A;nc|ENSG00000006118|Q24JP5-2|TMEM132A	ENST00000540112.1_3_11:60703176-60704376:+|nuORF	ENST00000540112.1_3_11:60703176-60704376:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	596.308349609375	2	596.239726	1190.4649	-0.085699	-5.1097E-05	4.1137	0.0024528	4.028	0.0024017	596.2420581098812	52.583	0.84953	49.375	49.145	49.995	-3.208					29	16	2	0	0	0	0.027117	1	3161	3161		23.042	8.1776	1	58945			6442	871	5162	5171	7550	7550					-0.12271442803580612
EEEEEKTSVLG	11	Unmodified	_EEEEEKTSVLG_					0	0	0		CPLX3|p.A120T|1|0.08|ENSG00000213578|chr15:74830235-74830235|G/A|missense_variant	CPLX3|p.A120T|1|0.08|ENSG00000213578|chr15:74830235-74830235|G/A|missense_variant	CPLX3|p.A120T|1|0.08|ENSG00000213578|chr15:74830235-74830235|G/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	416.5514221191406	3	417.19799	1248.57214	0.1002	4.1802E-05	-1.4034	-0.00058548	-1.3032	-0.00054368	417.1973327711164	38.652	0.64421	35.725	35.552	36.196	-2.9264					16	12	2	0	0	0	0.025911	1	1576	1576		14.086	0	1	21334			6443	675	5163	5172	7551	7551					-0.04220149597699674
EEEEIDVVTV	10	Unmodified	_EEEEIDVVTV_					0	0	0		MYCN|p.D272A|1|0.05|ENSG00000134323|chr2:15945517-15945517|A/C|missense_variant;ENSG00000134323|ENST00000281043|MYCN	MYCN|p.D272A|1|0.05|ENSG00000134323|chr2:15945517-15945517|A/C|missense_variant	MYCN|p.D272A|1|0.05|ENSG00000134323|chr2:15945517-15945517|A/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.8102416992188	2	581.279709	1160.54486	-0.60488	-0.0003516	-0.80137	-0.00046582	-1.4062	-0.00081742	581.2796358667217	60.296	0.3614	60.296	60.116	60.477	0					13	8	2	0	0	0	0.027056	1	5263	5263		20.947	6.0821	1	209090			6444	4283	5164	5173	7552	7552					-0.028986331381020136
EEEEKNIKN	9	Unmodified	_EEEEKNIKN_					0	0	0			REV__tr|A0A553SSQ3|A0A553SSQ3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03570PE=4SV=1	REV__tr|A0A553SSQ3|A0A553SSQ3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03570PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.3299560546875	2	566.777667	1131.54078	0.34564	0.0001959	-0.95184	-0.00053948	-0.6062	-0.00034358	566.7766983007068	62.922	0.19957	62.922	62.777	62.976	0					6	4	2	0	0	0	0.027462	1	5638	5638		16.473	0	1	180380	+		6445	30863	5165	5174	7553	7553					-0.019726778411495616
EEEERLCRE	9	Unmodified	_EEEERLCRE_					0	0	0		ENSG00000079101|ENST00000692774|CLUL1	ENSG00000079101|ENST00000692774|CLUL1	ENSG00000079101|ENST00000692774|CLUL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	596.308349609375	2	596.766777	1191.519	-0.0062466	-3.7278E-06	1.3042	0.0007783	1.298	0.00077457	596.7672412443072	52.549	0.45823	49.341	49.094	49.553	-3.208					10	8	2	0	0	0	0.027462	1	3161	3161		30.504	20.238	1	9466			6446	1602	5166	5175	7554	7554					-0.06909805861346285
EEEHESWDE	9	Unmodified	_EEEHESWDE_					0	0	0		ENSG00000173517|ENST00000682557|PEAK1;PEAK1|p.N564Tfs*75|1|0.06|ENSG00000173517|chr15:77180241-77180241|C/-|frameshift_variant;PEAK1|p.S1179Efs*7|1|0.04|ENSG00000173517|chr15:77133547-77133548|-/C|frameshift_variant	ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	595.8152465820312	2	595.21764	1188.42073	3.0126	0.0017932	2.9987	0.0017849	6.0113	0.003578	595.2191815560736	100.91	0.37336	100.91	100.69	101.06	0					12	8	2	0	0	0	0.027462	1	11219	11219		31.955	14.59	1	254490			6447	7384	5167	5176	7555	7555					-0.1659471090556508
EEEHESWDE	9	Unmodified	_EEEHESWDE_					0	0	0		ENSG00000173517|ENST00000682557|PEAK1;PEAK1|p.N564Tfs*75|1|0.06|ENSG00000173517|chr15:77180241-77180241|C/-|frameshift_variant;PEAK1|p.S1179Efs*7|1|0.04|ENSG00000173517|chr15:77133547-77133548|-/C|frameshift_variant	ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	595.21764	1188.42073	-0.15175	-9.0324E-05	2.488	0.0014809	2.3363	0.0013906	595.2192326931189	102.15	0.46791	100.63	100.53	101	-1.5211	-0.13773	-0.00011805	NaN	31.955	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18101			6448	7384	5167	5176							-0.1659471090556508
EEEHTKKMF	9	Unmodified	_EEEHTKKMF_					0	0	0			REV__ENST00000515347.2_1_5:79584647-79585058:+|nuORF	REV__ENST00000515347.2_1_5:79584647-79585058:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	590.3005981445312	2	589.779156	1177.54376	-0.39208	-0.00023124	2.5469	0.0015021	2.1549	0.0012709	589.7805600996019	54.233	0.28859	54.233	54.089	54.378	0					10	6	2	0	0	0	0.027462	1	4384	4384		51.335	13.524	1	122530	+		6449	26996	5168	5177	7556	7556					-0.03791125988004751
EEEHTKKMF	9	Unmodified	_EEEHTKKMF_					0	0	0			REV__ENST00000515347.2_1_5:79584647-79585058:+|nuORF	REV__ENST00000515347.2_1_5:79584647-79585058:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	589.779156	1177.54376	-1.1147	-0.00065742	2.9255	0.0017254	1.8108	0.001068	589.7811099237907	56.813	0.39602	54.009	53.721	54.117	-2.804	-0.11201	0.00014875	NaN	51.335	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12792	+		6450	26996	5168	5177							-0.03791125988004751
EEEIRAPEI	9	Unmodified	_EEEIRAPEI_					0	0	0			REV__nc|ENSG00000180900|Q14160-2|SCRIB	REV__nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7941284179688	2	543.277303	1084.54005	-1.1666	-0.00063378	-2.9404	-0.0015974	-4.1069	-0.0022312	543.2736788249608	64.173	0.69395	64.173	63.894	64.588	0					23	16	2	0	0	0	0.027461	1	5803	5803		49.442	0	1	141690	+		6451	22204	5169	5178	7557	7557					0.001165275098173879
EEEKKIGVEY	10	Unmodified	_EEEKKIGVEY_					0	0	0			REV__ENSG00000113790|ENST00000231887|EHHADH	REV__ENSG00000113790|ENST00000231887|EHHADH	MULTI-SECPEP	OvCa9_classI_Rep4_	4	611.9104614257812	2	612.311343	1222.60813	0.96435	0.00059048	2.6682	0.0016338	3.6326	0.0022243	612.3127228610952	110.74	2.2106	109.14	108.49	110.7	-1.6011					56	41	2	0	0	0	0.027118	1	10211	10211		32.812	0	1	20200	+		6452	18171	5170	5179	7558	7558					0.005733523698154386
EEEKKIGVEY	10	Unmodified	_EEEKKIGVEY_					0	0	0			REV__ENSG00000113790|ENST00000231887|EHHADH	REV__ENSG00000113790|ENST00000231887|EHHADH	MULTI-MATCH	OvCa9_classI_Rep3	3		2	612.311343	1222.60813	1.6376	0.0010027	2.3563	0.0014428	3.9939	0.0024455	612.3124697621552	110.33	3.2362	109.18	107.37	110.61	-1.1444	0.022302	-0.00012382	NaN	45.972	97	62	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20360	+		6453	18171	5170	5179							0.005733523698154386
EEEKLRKEM	9	Unmodified	_EEEKLRKEM_					0	0	0		nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-7|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A;nc|ENSG00000137474|Q13402-3|MYO7A;nc|ENSG00000137474|Q13402-4|MYO7A;ENST00000481328.7_1_11:76890894-76905079:+|nuORF;nc|ENSG00000137474|Q13402-5|MYO7A	nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-5|MYO7A	nc|ENSG00000137474|Q13402-5|MYO7A	MULTI-MSMS	OvCa99_classI_Rep5	1	596.3073120117188	2	596.305538	1190.59652	-0.17714	-0.00010563	-0.016386	-9.7709E-06	-0.19352	-0.0001154	596.3054687087324	46.961	7.1463	46.961	46.587	53.733	0					374	164	4	0	0	0	0.33652	3	3974	3764;3793;3974		58.782	7.4465	1	16604000			6454	4586;15041	5171	5180	7559;7560;7561	7561					0.008848320748029437
EEEKLRKEM	9	Unmodified	_EEEKLRKEM_					0	0	0		nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-7|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A;nc|ENSG00000137474|Q13402-3|MYO7A;nc|ENSG00000137474|Q13402-4|MYO7A;ENST00000481328.7_1_11:76890894-76905079:+|nuORF;nc|ENSG00000137474|Q13402-5|MYO7A	nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-5|MYO7A	nc|ENSG00000137474|Q13402-5|MYO7A	MULTI-MSMS	OvCa9_classI_Rep2	2	596.305908203125	2	596.305538	1190.59652	-1.7027	-0.0010153	2.486	0.0014824	0.78333	0.0004671	596.3063733554482	51.837	3.4202	49.024	48.253	51.674	-2.8129					160	68	4	0	0	0	0.38529	2	3394	3394;3438		53.351	6.7778	1	554130			6455	4586;15041	5171	5180	7562;7563	7562					0.008848320748029437
EEELVVQNI	9	Unmodified	_EEELVVQNI_					0	0	0			REV__nc|ENSG00000185008|Q9HCK4-3|ROBO2	REV__nc|ENSG00000185008|Q9HCK4-3|ROBO2	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3084106445312	2	536.779679	1071.5448	-0.88661	-0.00047591	3.7928	0.0020359	2.9062	0.00156	537.784577411975	43.558	0.34383	43.558	43.393	43.737	0					16	7	3	0	0	0	0.027455	1	2908	2908		42.396	0	1	69502	+		6456	29053	5172	5181	7564	7564					0.011894116525809295
EEENSKVEL	9	Unmodified	_EEENSKVEL_					0	0	0		ENST00000581849.1_1_17:38296801-38318191:+|nuORF;ENST00000418132.7_1_17:38296747-38323177:+|nuORF;ENSG00000108349|ENST00000264645|CASC3	ENST00000581849.1_1_17:38296801-38318191:+|nuORF	ENST00000581849.1_1_17:38296801-38318191:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	538.7598876953125	2	538.758943	1075.50333	-0.40713	-0.00021935	0.11347	6.1134E-05	-0.29366	-0.00015821	538.7588578826012	54.413	1.1735	54.413	53.891	55.064	0					63	27	4	0	0	0	0.075543	1	4390	4390		104.06	7.8664	1	5953500			6457	2647	5173	5182	7565	7565					-0.03139769106746826
EEEPGIHSL	9	Unmodified	_EEEPGIHSL_					0	0	0		HYOU1|p.Q990Rfs*5|1|0.05|ENSG00000149428|chr11:119045626-119045626|T/-|frameshift_variant;ENSG00000149428|ENST00000617285|HYOU1;nc|ENSG00000149428|Q9Y4L1-2|HYOU1;ENST00000543287.5_1_11:118919950-118926831:-|nuORF	HYOU1|p.Q990Rfs*5|1|0.05|ENSG00000149428|chr11:119045626-119045626|T/-|frameshift_variant	HYOU1|p.Q990Rfs*5|1|0.05|ENSG00000149428|chr11:119045626-119045626|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	505.7445373535156	2	505.743096	1009.47164	-1.1988	-0.00060628	0.71005	0.0003591	-0.48874	-0.00024718	505.74340141645814	70.012	0.57169	70.012	69.756	70.328	0					28	13	3	0	0	0	0.079296	1	6696	6696		102.77	36.97	1	2000000			6458	5458	5174	5183	7566	7566					-0.03271717070037994
EEEPYSYSAGL	11	Unmodified	_EEEPYSYSAGL_					0	0	0			REV__tr|A0A7D6VVD2|A0A7D6VVD2_9CLOTATP-dependenthelicase/nucleasesubunitAOS=ClostridiumintestinaleOX=36845GN=addAPE=3SV=1	REV__tr|A0A7D6VVD2|A0A7D6VVD2_9CLOTATP-dependenthelicase/nucleasesubunitAOS=ClostridiumintestinaleOX=36845GN=addAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	622.77001953125	2	622.769508	1243.52446	1.8693	0.0011642	-2.7641	-0.0017214	-0.89477	-0.00055723	622.7681258029886	85.727	1.7616	85.727	85.211	86.972	0					129	42	6	0	0	0	0.31995	1	9028	9028		49.442	0	1	35613000	+		6459	31714	5175	5184	7567	7567					-0.08755803797885164
EEEQLQLRE	9	Unmodified	_EEEQLQLRE_					0	0	0		ENSG00000171608|ENST00000377346|PIK3CD	ENSG00000171608|ENST00000377346|PIK3CD	ENSG00000171608|ENST00000377346|PIK3CD	MULTI-SECPEP	OvCa9_classI_Rep2	2	587.8128051757812	2	587.290942	1172.56733	-0.61113	-0.00035891	-1.4164	-0.00083185	-2.0275	-0.0011908	587.2899285524571	98.278	0.93494	97.385	97.072	98.007	-0.89305					45	18	3	0	0	0	0.027462	1	8951	8951		44.377	0	1	145810			6460	7219	5176	5185	7568	7568					-0.012049889498030097
EEEQMKNEDS	10	Oxidation (M)	_EEEQM(Oxidation (M))KNEDS_		EEEQM(1)KNEDS		EEEQM(77)KNEDS	0	0	1			REV__ENSG00000181222|ENST00000674977|POLR2A	REV__ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	OvCa99_classI_Rep5	1	627.7462768554688	2	627.743164	1253.47178	1.1287	0.00070851	2.071	0.0013	3.1996	0.0020085	627.7446655299539	139.29	2.6077	139.29	138.93	141.54	0					148	53	6	0	0	0	0.32926	1	16269	16269		77.318	15.21	1	7095800	+		6461	22222	5177	5186	7569	7569		515			-0.14482129923021603
EEEQQKKKQLA	11	Unmodified	_EEEQQKKKQLA_					0	0	0			REV__nc|ENSG00000196586|Q9UM54-5|MYO6	REV__nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.7449645996094	3	453.580658	1357.72014	0.4868	0.0002208	0.40962	0.0001858	0.89642	0.0004066	453.58054254823935	58.054	0.50397	54.709	54.495	54.999	-3.3449					13	9	2	0	0	0	0.026145	1	3797	3797		23.378	17.377	1	18390	+		6462	22846	5178	5187	7570	7570					0.055592064468100943
EEEQQKKKQLA	11	Unmodified	_EEEQQKKKQLA_					0	0	0			REV__nc|ENSG00000196586|Q9UM54-5|MYO6	REV__nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-MATCH	OvCa9_classI_Rep2	2		3	453.580658	1357.72014	1.07	0.00048534	-0.92736	-0.00042063	0.14266	6.4708E-05	453.58046789877477	57.242	1.3977	54.45	54.178	55.576	-2.792	-0.12936	-0.00074225	NaN	23.378	39	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15146	+		6463	22846	5178	5187							0.055592064468100943
EEEREIKS	8	Unmodified	_EEEREIKS_					0	0	0		ENSG00000100813|ENST00000605057|ACIN1;nc|ENSG00000100813|Q9UKV3-5|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1	ENSG00000100813|ENST00000605057|ACIN1	ENSG00000100813|ENST00000605057|ACIN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.3202819824219	2	510.253828	1018.4931	-0.48878	-0.0002494	0.50479	0.00025757	0.01601	8.1692E-06	510.2541625226349	53.283	1.0918	53.283	52.956	54.048	0					36	25	2	0	0	0	0.028476	1	4308	4308		34.173	0	1	314560			6464	2107	5179	5188	7571	7571					-0.015403320413156507
EEESLLRTL	9	Unmodified	_EEESLLRTL_					0	0	0		nc|ENSG00000180264|Q7Z7M1|ADGRD2;ENSG00000180264|ENST00000696331|ADGRD2	nc|ENSG00000180264|Q7Z7M1|ADGRD2	nc|ENSG00000180264|Q7Z7M1|ADGRD2	MULTI-SECPEP	OvCa9_classI_Rep3	3	545.829833984375	2	545.292953	1088.57135	-0.69726	-0.00038021	-1.3285	-0.00072443	-2.0258	-0.0011046	545.2919950549048	97.569	1.1063	95.81	95.414	96.52	-1.7595					40	21	2	0	0	0	0.027072	1	6482	6482		90.37	0	1	55008			6465	7867	5180	5189	7572	7572					0.030611005439368455
EEESLPEEKI	10	Unmodified	_EEESLPEEKI_					0	0	0			REV__ENSG00000055044|ENST00000264279|NOP58	REV__ENSG00000055044|ENST00000264279|NOP58	MULTI-MSMS	OvCa9_classI_Rep3	3	601.79296875	2	601.792983	1201.57141	1.6077	0.00096752	-0.77442	-0.00046604	0.83331	0.00050148	601.7924450131298	78.327	1.8539	75.975	75.647	77.501	-2.3527					93	36	4	0	0	0	0.094891	1	4161	4161		114.89	16.313	1	728950	+		6466	16706	5181	5190	7573	7573					-0.021309442467554618
EEESLPEEKI	10	Unmodified	_EEESLPEEKI_					0	0	0			REV__ENSG00000055044|ENST00000264279|NOP58	REV__ENSG00000055044|ENST00000264279|NOP58	MULTI-MATCH	OvCa9_classI_Rep2	2		2	601.792983	1201.57141	-0.59947	-0.00036076	1.5824	0.00095226	0.9829	0.0005915	601.7938821441844	78.036	2.0495	76.247	75.675	77.724	-1.7894	0.1228	0.0015781	NaN	114.89	93	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155850	+		6467	16706	5181	5190							-0.021309442467554618
EEESLPEEKI	10	Unmodified	_EEESLPEEKI_					0	0	0			REV__ENSG00000055044|ENST00000264279|NOP58	REV__ENSG00000055044|ENST00000264279|NOP58	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	601.792983	1201.57141	1.6077	0.00096752	-0.77442	-0.00046604	0.83331	0.00050148	601.7924450131298	78.327	1.8539	75.975	75.647	77.501	-2.3527	-0.14929	-0.0012585	NaN	114.89	93	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	728950	+		6468	16706	5181	5190							-0.021309442467554618
EEESLPEEKI	10	Unmodified	_EEESLPEEKI_					0	0	0			REV__ENSG00000055044|ENST00000264279|NOP58	REV__ENSG00000055044|ENST00000264279|NOP58	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	601.792983	1201.57141	0.48381	0.00029115	0.057025	3.4317E-05	0.54083	0.00032547	601.7929681861602	78.902	1.8703	76.151	75.899	77.769	-2.7514	0.026489	-0.00025777	NaN	114.89	77	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	708700	+		6469	16706	5181	5190							-0.021309442467554618
EEEVIDLPTD	10	Unmodified	_EEEVIDLPTD_					0	0	0			REV__PPP1R12A|p.A146V|1|0.05|ENSG00000058272|chr12:79845352-79845352|G/A|missense_variant	REV__PPP1R12A|p.A146V|1|0.05|ENSG00000058272|chr12:79845352-79845352|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.7803955078125	2	580.271884	1158.52921	-0.60489	-0.000351	-0.50931	-0.00029554	-1.1142	-0.00064654	580.2717415053212	70.492	0.4756	70.492	70.286	70.761	0					16	11	2	0	0	0	0.026752	1	6746	6746		20.947	0	1	251890	+		6470	29313	5182	5191	7574	7574					-0.04370919655139005
EEEVPNPKK	9	Unmodified	_EEEVPNPKK_					0	0	0			REV__MKI67|p.K2670Nfs*23|1|0.03|ENSG00000148773|chr10:128103824-128103836|CTTTTCCTTAGGT/-|frameshift_variant	REV__MKI67|p.K2670Nfs*23|1|0.03|ENSG00000148773|chr10:128103824-128103836|CTTTTCCTTAGGT/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	535.2841186523438	2	535.279846	1068.54514	0.75302	0.00040308	3.8231	0.0020464	4.5762	0.0024495	535.2817380375853	66.942	0.99952	66.942	66.372	67.371	0					40	24	2	0	0	0	0.075543	1	6233	6233		104.06	26.739	1	2569700	+		6471	20125	5183	5192	7575	7575					0.013608313724262189
EEEVQLVVE	9	Unmodified	_EEEVQLVVE_					0	0	0			REV__nc|ENSG00000105357|Q7Z406-4|MYH14	REV__nc|ENSG00000105357|Q7Z406-4|MYH14	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.81396484375	2	537.271687	1072.52882	2.0814	0.0011183	0.92447	0.00049669	3.0059	0.001615	537.2721244247389	110.65	0.98041	110.65	110.09	111.07	0					33	21	2	0	0	0	0.027425	1	12593	12593		69.628	0.78148	1	94796	+		6472	17714	5184	5193	7576	7576					-0.0045429458432408865
EEEVVAALPE	10	Unmodified	_EEEVVAALPE_					0	0	0		nc|ENSG00000150527|Q96PC5-6|MIA2;nc|ENSG00000150527|Q96PC5-14|MIA2;ENST00000557038.5_2_14:39734598-39748673:+|nuORF	nc|ENSG00000150527|Q96PC5-6|MIA2	nc|ENSG00000150527|Q96PC5-6|MIA2	MULTI-SECPEP	OvCa9_classI_Rep2	2	543.3381958007812	2	543.271687	1084.52882	-2.2945	-0.0012466	-3.9538	-0.002148	-6.2483	-0.0033945	543.2694441713151	62.67	0.35778	59.925	59.646	60.004	-2.7444					9	6	2	0	0	0	0.026915	1	4717	4717		20.947	0	1	10817			6473	15091	5185	5194	7577	7577					-0.01006294584317402
EEEVWRIE	8	Unmodified	_EEEVWRIE_					0	0	0		ENSG00000157214|ENST00000394621|STEAP2;nc|ENSG00000157214|Q8NFT2-2|STEAP2;nc|ENSG00000157214|Q8NFT2-3|STEAP2	ENSG00000157214|ENST00000394621|STEAP2	ENSG00000157214|ENST00000394621|STEAP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.8265380859375	2	545.264196	1088.51384	2.1298	0.0011613	3.9695	0.0021644	6.0993	0.0033257	545.7659453278054	91.884	0.42712	91.884	91.625	92.052	0					18	9	3	0	0	0	0.028476	1	9922	9922		44.117	8.9161	1	264730			6474	5883	5186	5195	7578	7578					-0.026877416616798655
EEFAESTKII	10	Unmodified	_EEFAESTKII_					0	0	0			REV__tr|A0A7D6VNJ7|A0A7D6VNJ7_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18160PE=3SV=1	REV__tr|A0A7D6VNJ7|A0A7D6VNJ7_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18160PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	583.802490234375	2	583.800611	1165.58667	0.97841	0.0005712	3.0849	0.0018009	4.0633	0.0023721	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.75313	1	1367	1367		24.519	3.5723	1	155970	+		6475	31186	5187	5196	7579	7579					0.010499673411004551
EEFEHKEEVL	10	Unmodified	_EEFEHKEEVL_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L;GNL3L|p.G499Vfs*4|1|0.04|ENSG00000130119|chrX:54558484-54558485|-/T|frameshift_variant;ENST00000489691.1_1_X:54558969-54570464:+|nuORF	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MULTI-MSMS	OvCa99_classI_Rep5	1	644.8087158203125	2	644.806425	1287.5983	-0.41092	-0.00026496	-0.19566	-0.00012616	-0.60658	-0.00039113	644.8061953438882	61.607	0.70732	61.607	61.374	62.081	0					45	16	4	0	0	0	0.20836	1	5435	5435		93.143	16.369	1	3597400			6476	3956	5188	5197	7580	7580					-0.033998356355596115
EEFGRFASF	9	Unmodified	_EEFGRFASF_					0	0	0		ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.2537231445312	2	545.253631	1088.49271	-0.60284	-0.0003287	0.20617	0.00011242	-0.39667	-0.00021629	545.2536622749726	105.64	1.3151	103.62	103.35	104.66	-2.0161					64	25	4	0	0	0	0.035142	1	9587	9587		131.03	48.726	1	290350			6477	8967	5189	5198	7581	7581					-0.047997069705161266
EEFGRFASF	9	Unmodified	_EEFGRFASF_					0	0	0		ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	MULTI-MATCH	OvCa9_classI_Rep2	2		2	545.253631	1088.49271	-0.82194	-0.00044816	0.6292	0.00034307	-0.19274	-0.00010509	545.2538217010233	104.23	1.3857	103.65	103.37	104.76	-0.57639	0.019254	0.0004535	NaN	131.03	76	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	241470			6478	8967	5189	5198							-0.047997069705161266
EEFGRFASF	9	Unmodified	_EEFGRFASF_					0	0	0		ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	MULTI-MATCH	OvCa9_classI_Rep3	3		2	545.253631	1088.49271	0.18661	0.00010175	-0.25298	-0.00013794	-0.066369	-3.6188E-05	545.2533410450209	104.97	1.4059	103.62	103.36	104.77	-1.3482	-0.0098236	-0.00050853	NaN	131.03	60	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302210			6479	8967	5189	5198							-0.047997069705161266
EEFKKSLRVTL	11	Unmodified	_EEFKKSLRVTL_					0	0	0			REV__ENSG00000214929|ENST00000344803|SPATA31D1	REV__ENSG00000214929|ENST00000344803|SPATA31D1	MULTI-MSMS	OvCa9_classI_Rep3	3	450.5986328125	3	450.59776	1348.77145	-0.36922	-0.00016637	0.94492	0.00042578	0.57569	0.00025941	450.5981883929496	75.04	3.3509	72.629	71.944	75.295	-2.4106					204	65	5	0	0	0	0.54737	1	3793	3793		49.466	10.752	1	1091400	+		6480	23302	5190	5199	7582	7582					0.11101575211500858
EEFLDKAKL	9	Unmodified	_EEFLDKAKL_					0	0	0		tr|A0A7D6VSC4|A0A7D6VSC4_9CLOT4Fe-4SbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05825PE=4SV=1	tr|A0A7D6VSC4|A0A7D6VSC4_9CLOT4Fe-4SbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05825PE=4SV=1	tr|A0A7D6VSC4|A0A7D6VSC4_9CLOT4Fe-4SbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05825PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	546.8018188476562	2	546.800414	1091.58628	2.0163	0.0011025	-0.29683	-0.00016231	1.7194	0.00094018	546.8001203037154	107.36	1.9187	107.36	107.14	109.06	0					93	44	5	0	0	0	0.091859	1	12126	12126		99.375	3.1845	1	12261000			6481	35014	5191	5200	7583	7583					0.04414592411899321
EEFLFRTAL	9	Unmodified	_EEFLFRTAL_					0	0	0		ENSG00000132405|ENST00000409757|TBC1D14;nc|ENSG00000132405|Q9P2M4-2|TBC1D14	ENSG00000132405|ENST00000409757|TBC1D14	ENSG00000132405|ENST00000409757|TBC1D14	MULTI-MSMS	OvCa9_classI_Rep3	3	563.2991333007812	2	563.300581	1124.58661	0.37339	0.00021033	2.283	0.001286	2.6564	0.0014964	563.3000522257295	119.45	1.6768	118.43	117.93	119.61	-1.0271					75	33	3	0	0	0	0.075543	2	9062	9062;9068		104.06	17.808	1	306230			6482	4137	5192	5201	7584;7585	7584					0.029300121317419325
EEFLFRTAL	9	Unmodified	_EEFLFRTAL_					0	0	0		ENSG00000132405|ENST00000409757|TBC1D14;nc|ENSG00000132405|Q9P2M4-2|TBC1D14	ENSG00000132405|ENST00000409757|TBC1D14	ENSG00000132405|ENST00000409757|TBC1D14	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.2996215820312	2	563.300581	1124.58661	-0.01319	-7.4301E-06	3.0641	0.001726	3.0509	0.0017186	563.3003696885972	119.68	1.3636	118.33	118.03	119.4	-1.3444					64	25	3	0	0	0	0.012051	3	11241	11232;11241;11254		162.25	58.196	1	319130			6483	4137	5192	5201	7586;7587;7588	7587					0.029300121317419325
EEFLFRTAL	9	Unmodified	_EEFLFRTAL_					0	0	0		ENSG00000132405|ENST00000409757|TBC1D14;nc|ENSG00000132405|Q9P2M4-2|TBC1D14	ENSG00000132405|ENST00000409757|TBC1D14	ENSG00000132405|ENST00000409757|TBC1D14	MULTI-MATCH	OvCa9_classI_Rep2	2		2	563.300581	1124.58661	-1.2139	-0.00068381	2.2628	0.0012746	1.0489	0.00059083	563.3010708717185	118.61	1.1876	118.46	118.18	119.37	-0.14755	0.051942	-0.00013379	NaN	162.25	43	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260210			6484	4137	5192	5201							0.029300121317419325
EEFLRPVQR	9	Unmodified	_EEFLRPVQR_					0	0	0			REV__ENSG00000135763|ENST00000258243|URB2	REV__ENSG00000135763|ENST00000258243|URB2	MULTI-SECPEP	OvCa9_classI_Rep2	2	588.3067626953125	2	587.32238	1172.63021	-1.2576	-0.0007386	1.1306	0.00066405	-0.12692	-7.4542E-05	587.3223338642944	63.794	0.42358	61.05	60.842	61.266	-2.7444					12	7	2	0	0	0	0.027232	1	4840	4840		66.429	0	1	28433	+		6485	19320	5193	5202	7589	7589					0.05079621628897257
EEFLSKVSI	9	Unmodified	_EEFLSKVSI_					0	0	0		ENSG00000188191|ENST00000537384|PRKAR1B;ENSG00000108946|ENST00000589228|PRKAR1A;nc|ENSG00000108946|P10644-2|PRKAR1A	ENSG00000188191|ENST00000537384|PRKAR1B;ENSG00000108946|ENST00000589228|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MSMS	OvCa9_classI_Rep2	2	526.2861938476562	2	526.28714	1050.55973	-1.0499	-0.00055253	0.59261	0.00031188	-0.45725	-0.00024065	526.2872771805119	103.05	1.5798	102.37	102.03	103.61	-0.68459					85	31	4	0	0	0	0.084918	3	9499	9499;9504;9509		101.25	24.478	1	429040			6486	2687;8457	5194	5203	7590;7591;7592	7590					0.036469035205982436
EEFLSKVSI	9	Unmodified	_EEFLSKVSI_					0	0	0		ENSG00000188191|ENST00000537384|PRKAR1B;ENSG00000108946|ENST00000589228|PRKAR1A;nc|ENSG00000108946|P10644-2|PRKAR1A	ENSG00000188191|ENST00000537384|PRKAR1B;ENSG00000108946|ENST00000589228|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MSMS	OvCa9_classI_Rep3	3	526.2858276367188	2	526.28714	1050.55973	-0.33284	-0.00017517	-0.09802	-5.1587E-05	-0.43086	-0.00022676	526.2870134951581	103.77	1.1496	102.33	102.03	103.18	-1.4347					67	21	4	0	0	0	0.021573	2	7201	7201;7207		145.16	35.036	1	567320			6487	2687;8457	5194	5203	7593;7594	7593					0.036469035205982436
EEFLSKVSI	9	Unmodified	_EEFLSKVSI_					0	0	0		ENSG00000188191|ENST00000537384|PRKAR1B;ENSG00000108946|ENST00000589228|PRKAR1A;nc|ENSG00000108946|P10644-2|PRKAR1A	ENSG00000188191|ENST00000537384|PRKAR1B;ENSG00000108946|ENST00000589228|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.285888671875	2	526.28714	1050.55973	-1.0148	-0.00053409	0.64464	0.00033927	-0.37017	-0.00019482	526.2873096136325	104.41	1.7347	102.29	101.96	103.69	-2.1192					86	33	4	0	0	0	0.043101	3	9444	9444;9454;9467		124.08	41.84	1	563340			6488	2687;8457	5194	5203	7595;7596;7597	7595					0.036469035205982436
EEFLSKVSI	9	Unmodified	_EEFLSKVSI_					0	0	0		ENSG00000188191|ENST00000537384|PRKAR1B;ENSG00000108946|ENST00000589228|PRKAR1A;nc|ENSG00000108946|P10644-2|PRKAR1A	ENSG00000188191|ENST00000537384|PRKAR1B;ENSG00000108946|ENST00000589228|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MATCH	OvCa99_classI_Rep5	1		2	526.28714	1050.55973	2.0665	0.0010876	1.6654	0.00087647	3.7319	0.0019641	526.2866780475601	102.21	0.47045	102.21	101.95	102.42	0	-0.090575	0.0012904	NaN	145.16	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271600			6489	2687;8457	5194	5203							0.036469035205982436
EEFNAIDKV	9	Unmodified	_EEFNAIDKV_					0	0	0			REV__tr|A0A7D6VNA5|A0A7D6VNA5_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12080PE=4SV=1	REV__tr|A0A7D6VNA5|A0A7D6VNA5_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12080PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.8095092773438	2	532.766571	1063.51859	-1.1205	-0.00059697	-2.6872	-0.0014317	-3.8077	-0.0020286	532.7667382148954	77.859	0.48666	75.043	74.825	75.312	-2.8165					14	9	2	0	0	0	0.027062	1	6272	6272		110.12	5.3733	1	29014	+		6490	31166	5195	5204	7598	7598					-0.010628575189002731
EEFTKLTVF	9	Unmodified	_EEFTKLTVF_					0	0	0			REV__ENSG00000125484|ENST00000372146|GTF3C4	REV__ENSG00000125484|ENST00000372146|GTF3C4	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.2984008789062	2	557.294965	1112.57538	0.67214	0.00037458	0.61267	0.00034144	1.2848	0.00071602	557.2952302846592	142.74	3.2015	141.29	140.1	143.3	-1.4427					104	61	2	0	0	0	0.61208	1	13975	13975		30.504	1.3541	1	35102	+		6491	18727	5196	5205	7599	7599					0.02359190037600456
EEFWFENYVEI	11	Unmodified	_EEFWFENYVEI_					0	0	0			REV__ENST00000520248.1_1_8:79672597-79674655:-|nuORF	REV__ENST00000520248.1_1_8:79672597-79674655:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	502.2261657714844	3	502.22588	1503.65581	1.1541	0.00057961	0.68972	0.00034639	1.8438	0.000926	502.2263321518465	89.077	2.1286	87.709	87.428	89.557	-1.3676					124	42	5	0	0	0	0.72472	1	7825	7825		19.263	0	1	477000	+		6492	27053	5197	5206	7600	7600					-0.07586993429981703
EEGAHDLYM	9	Unmodified	_EEGAHDLYM_					0	0	0		ENST00000431534.5_1_22:41925289-41928713:-|nuORF;nc|ENSG00000100413|Q9Y535-2|POLR3H;ENSG00000100413|ENST00000355209|POLR3H	ENST00000431534.5_1_22:41925289-41928713:-|nuORF	ENST00000431534.5_1_22:41925289-41928713:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.2943725585938	2	532.721307	1063.42806	0.66674	0.00035519	0.14826	7.8981E-05	0.815	0.00043417	532.7213291110196	159.93	0.39888	159.93	159.76	160.16	0					12	7	2	0	0	0	0.027462	1	18746	18746		35.618	7.364	1	21631			6493	2065	5198	5207	7601	7601					-0.10111649838836456
EEGEFLYNL	9	Unmodified	_EEGEFLYNL_					0	0	0			REV__tr|A0A553SFT4|A0A553SFT4_NIACIlipoate--proteinligaseOS=NialliacirculansOX=1397GN=CEQ21_09455PE=4SV=1	REV__tr|A0A553SFT4|A0A553SFT4_NIACIlipoate--proteinligaseOS=NialliacirculansOX=1397GN=CEQ21_09455PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.8226928710938	2	557.258579	1112.50261	-2.5479	-0.0014198	-2.5662	-0.00143	-5.1141	-0.0028499	557.2569204930462	104.04	0.47128	104.04	103.85	104.32	0					17	10	2	0	0	0	0.027461	1	11636	11636		49.442	22.749	1	234080	+		6494	29620	5199	5208	7602	7602					-0.049145637558240196
EEGERGGQEP	10	Unmodified	_EEGERGGQEP_					0	0	0		ENSG00000154319|ENST00000284486|FAM167A	ENSG00000154319|ENST00000284486|FAM167A	ENSG00000154319|ENST00000284486|FAM167A	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.8115844726562	2	544.236167	1086.45778	1.9235	0.0010468	-2.672	-0.0014542	-0.74854	-0.00040738	544.2345966023557	136.5	0.66867	136.5	136.35	137.01	0					15	13	2	0	0	0	0.026624	1	15975	15975		72.879	6.45	1	105810			6495	5730	5200	5209	7603	7603					-0.08198994569124807
EEGLLLISL	9	Unmodified	_EEGLLLISL_					0	0	0			REV__tr|A0A553STB0|A0A553STB0_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_04630PE=3SV=1	REV__tr|A0A553STB0|A0A553STB0_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_04630PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.7825622558594	2	493.792058	985.569563	0.11981	5.9163E-05	4.3041	0.0021253	4.4239	0.0021845	493.7941862132809	62.019	1.0659	58.562	58.29	59.356	-3.4577					38	21	2	0	0	0	0.027462	1	4351	4351		45.952	11.779	1	294590	+		6496	30940	5201	5210	7604	7604					0.07620091525961925
EEGLRRLF	8	Unmodified	_EEGLRRLF_					0	0	0		ENST00000570310.5_1_17:79682952-79684780:+|nuORF;ENST00000574129.5_1_17:79680521-79687104:+|nuORF;ENSG00000183048|ENST00000350690|SLC25A10;nc|ENSG00000183048|Q9UBX3-2|SLC25A10	ENST00000570310.5_1_17:79682952-79684780:+|nuORF	ENST00000570310.5_1_17:79682952-79684780:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.2832946777344	2	510.285266	1018.55598	1.7639	0.00090008	1.6929	0.00086386	3.4568	0.0017639	510.28600576706344	81.782	0.64936	81.782	81.572	82.222	0					21	15	2	0	0	0	0.028476	1	8473	8473		33.516	5.6333	1	303300			6497	13895	5202	5211	7605	7605					0.04744278537373248
EEGRVGTGPL	10	Unmodified	_EEGRVGTGPL_					0	0	0			REV__ENST00000405486.5_2_22:41681791-41681956:-|nuORF	REV__ENST00000405486.5_2_22:41681791-41681956:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7646179199219	2	507.764363	1013.51417	-1.4467	-0.00073458	-1.227	-0.00062303	-2.6737	-0.0013576	507.7636343810992	118.57	3.8509	117.22	115.9	119.75	-1.3444					112	73	2	0	0	0	0.49558	1	11184	11184		54.776	3.5836	1	81601	+		6498	25440	5203	5212	7606	7606					0.007956780581821477
EEGVEWGLV	9	Unmodified	_EEGVEWGLV_					0	0	0		ENSG00000178538|ENST00000317995|CA8;ENST00000529918.1_1_8:61178441-61193874:-|nuORF	ENSG00000178538|ENST00000317995|CA8	ENSG00000178538|ENST00000317995|CA8	MULTI-SECPEP	OvCa9_classI_Rep2	2	509.7706298828125	2	509.248015	1016.48148	-0.59455	-0.00030277	-2.7817	-0.0014166	-3.3762	-0.0017193	509.2465088302221	59.679	0.98641	56.898	56.452	57.438	-2.7801					43	18	3	0	0	0	0.027433	1	4375	4375		57.811	6.2835	1	94288			6499	7760	5204	5213	7607	7607					-0.0261052906465693
EEGVRFKALQI	11	Unmodified	_EEGVRFKALQI_					0	0	0		ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant;ENSG00000164199|ENST00000405460|ADGRV1;ENST00000509621.1_3_5:89989878-90055411:+|nuORF	ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	645.3613891601562	2	645.364244	1288.71394	-0.67495	-0.00043559	0.59549	0.00038431	-0.079465	-5.1284E-05	645.3644453167494	115.9	1.0861	114.86	114.55	115.64	-1.0414					54	21	4	0	0	0	0.68757	1	8629	8629		33.922	2.3918	1	112570			6500	42	5205	5214	7608	7608					0.08112733005941664
EEHEFFHIL	9	Unmodified	_EEHEFFHIL_					0	0	0		nc|ENSG00000155508|Q9UFF9-2|CNOT8;nc|ENSG00000155508|Q9UFF9-3|CNOT8;ENSG00000155508|ENST00000285896|CNOT8	nc|ENSG00000155508|Q9UFF9-2|CNOT8	nc|ENSG00000155508|Q9UFF9-2|CNOT8	MULTI-MSMS	OvCa99_classI_Rep5	1	600.7882690429688	2	600.787838	1199.56112	-2.4312	-0.0014606	0.63711	0.00038277	-1.7941	-0.0010779	600.7878896811419	103.96	0.6371	103.96	103.69	104.32	0					36	14	4	0	0	0	0.19716	1	11641	11641		76.847	12.639	1	1003800			6501	5786	5206	5215	7609	7609					-0.030674623906634224
EEHGDEARHE	10	Unmodified	_EEHGDEARHE_					0	0	0			REV__RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	REV__RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	604.7445068359375	2	604.749973	1207.48539	-5.401	-0.0032662	-1.3222	-0.00079958	-6.7231	-0.0040658	604.7484452987635	159.25	1.3459	159.02	158.53	159.87	-0.22697					95	26	5	0	0	0	0.76627	1	16229	16229		23.042	1.0826	1	111620	+		6502	21802	5207	5216	7610	7610					-0.11005091308902593
EEHGDEARHE	10	Unmodified	_EEHGDEARHE_					0	0	0			REV__RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	REV__RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	605.2496948242188	2	604.749973	1207.48539	-5.0214	-0.0030367	-1.3618	-0.00082357	-6.3832	-0.0038603	605.2509378418337	159.86	2.7414	158.53	158.11	160.85	-1.3316					198	54	5	0	0	0	0.65849	1	13939	13939		35.152	9.7019	1	177340	+		6503	21802	5207	5216	7611	7611					-0.11005091308902593
EEHLVKKL	8	Unmodified	_EEHLVKKL_					0	0	0			REV__ENST00000574201.1_1_17:7217587-7218431:-|nuORF	REV__ENST00000574201.1_1_17:7217587-7218431:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.7718811035156	2	498.297842	994.581131	-1.0042	-0.00050041	0.99536	0.00049598	-0.0088736	-4.4217E-06	498.2983574454124	101.94	0.42075	100.42	100.21	100.63	-1.5211					12	7	2	0	0	0	0.028476	1	6971	6971		34.173	12.213	1	20045	+		6504	19084	5208	5217	7612	7612					0.08362333339937322
EEHMFHKLIEA	11	Unmodified	_EEHMFHKLIEA_					0	0	0		ENSG00000156787|ENST00000287380|TBC1D31;nc|ENSG00000156787|Q96DN5-3|TBC1D31;nc|ENSG00000156787|Q96DN5-2|TBC1D31	ENSG00000156787|ENST00000287380|TBC1D31	ENSG00000156787|ENST00000287380|TBC1D31	MULTI-SECPEP	OvCa9_classI_Rep4_	4	461.9212951660156	3	461.8957	1382.66527	-0.3274	-0.00015122	3.5588	0.0016438	3.2314	0.0014926	462.23202486149694	61.224	0.54411	57.794	57.494	58.038	-3.43					21	10	3	0	0	0	0.025722	1	4155	4155		34.087	1.0471	1	39208			6505	5856	5209	5218	7613	7613					-0.010755036254522565
EEHNKLDI	8	Unmodified	_EEHNKLDI_					0	0	0		tr|A0A553SNN7|A0A553SNN7_NIACISulfotransferaseOS=NialliacirculansOX=1397GN=CEQ21_24845PE=4SV=1	tr|A0A553SNN7|A0A553SNN7_NIACISulfotransferaseOS=NialliacirculansOX=1397GN=CEQ21_24845PE=4SV=1	tr|A0A553SNN7|A0A553SNN7_NIACISulfotransferaseOS=NialliacirculansOX=1397GN=CEQ21_24845PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	499.2532653808594	2	499.251089	996.487624	2.8376	0.0014167	-0.89692	-0.00044779	1.9407	0.00096891	499.2505825425233	89.96	0.93581	89.96	89.641	90.577	0					55	22	4	0	0	0	0.48084	1	9616	9616		79.451	2.6044	1	7411100			6506	33940	5210	5219	7614	7614					-0.01076010833151031
EEIAFLKKL	9	Unmodified	_EEIAFLKKL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa9_classI_Rep2	2	545.8289184570312	2	545.828975	1089.6434	0.0040309	2.2002E-06	-0.76148	-0.00041564	-0.75745	-0.00041344	545.8285637274697	96.066	3.3071	95.038	94.714	98.021	-1.0281					194	66	6	0	0	0	0.0076713	16	8655	8637;8643;8649;8655;8661;8667;8673;8679;8685;8692;8698;8703;8709;8716;8725;8731		181.81	65.024	1	4294400			6507	1049	5211	5220	7615;7616;7617;7618;7619;7620;7621;7622;7623;7624;7625;7626;7627;7628;7629;7630	7618					0.10216059688286805
EEIAFLKKL	9	Unmodified	_EEIAFLKKL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa9_classI_Rep3	3	545.8295288085938	2	545.828975	1089.6434	-0.94392	-0.00051522	0.2359	0.00012876	-0.70801	-0.00038645	545.8290461985099	97.045	3.3726	95.216	94.827	98.2	-1.8286					181	65	5	0	0	0	0.0076713	14	6400	6395;6400;6406;6412;6418;6424;6430;6436;6442;6448;6455;6461;6468;6474		197.6	66.312	1	5296800			6508	1049	5211	5220	7631;7632;7633;7634;7635;7636;7637;7638;7639;7640;7641;7642;7643;7644	7632					0.10216059688286805
EEIAFLKKL	9	Unmodified	_EEIAFLKKL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.8302612304688	2	545.828975	1089.6434	0.21265	0.00011607	-0.87805	-0.00047927	-0.6654	-0.0003632	545.8284767541725	97.57	3.6805	95.191	94.859	98.54	-2.3786					206	71	5	0	0	0	0.0078056	11	8642	8633;8642;8654;8666;8678;8690;8702;8716;8730;8742;8753		197.6	75.424	1	4563700			6509	1049	5211	5220	7645;7646;7647;7648;7649;7650;7651;7652;7653;7654;7655	7646					0.10216059688286805
EEIAISAYY	9	Unmodified	_EEIAISAYY_					0	0	0		tr|A0A553SIQ1|A0A553SIQ1_NIACIPASdomainS-boxproteinOS=NialliacirculansOX=1397GN=CEQ21_15255PE=4SV=1	tr|A0A553SIQ1|A0A553SIQ1_NIACIPASdomainS-boxproteinOS=NialliacirculansOX=1397GN=CEQ21_15255PE=4SV=1	tr|A0A553SIQ1|A0A553SIQ1_NIACIPASdomainS-boxproteinOS=NialliacirculansOX=1397GN=CEQ21_15255PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.8101196289062	2	529.755672	1057.49679	-1.9768	-0.0010472	0.20913	0.00011079	-1.7677	-0.00093644	529.7552595807234	61.687	0.31473	58.928	58.672	58.987	-2.7593					7	5	2	0	0	0	0.027448	1	4599	4599		63.306	39.104	1	4633.1			6510	33409	5212	5221	7656	7656					-0.02965662267456537
EEIAISAYY	9	Unmodified	_EEIAISAYY_					0	0	0		tr|A0A553SIQ1|A0A553SIQ1_NIACIPASdomainS-boxproteinOS=NialliacirculansOX=1397GN=CEQ21_15255PE=4SV=1	tr|A0A553SIQ1|A0A553SIQ1_NIACIPASdomainS-boxproteinOS=NialliacirculansOX=1397GN=CEQ21_15255PE=4SV=1	tr|A0A553SIQ1|A0A553SIQ1_NIACIPASdomainS-boxproteinOS=NialliacirculansOX=1397GN=CEQ21_15255PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	529.755672	1057.49679	-0.23514	-0.00012457	4.0461	0.0021434	3.8109	0.0020189	529.7604806422574	58.715	0.32146	58.715	58.53	58.852	0	-0.10622	0.002037	NaN	53.351	10	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71598			6511	33409	5212	5221							-0.02965662267456537
EEIAKVEKL	9	Unmodified	_EEIAKVEKL_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;ENST00000556969.5_1_14:75601590-75614465:-|nuORF;ENST00000555036.1_1_14:75602424-75614456:-|nuORF	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	OvCa9_classI_Rep2	2	529.808837890625	2	529.808239	1057.60193	-2.0506	-0.0010864	0.47015	0.00024909	-1.5804	-0.00083734	529.8087799163501	61.613	2.1042	58.853	58.308	60.412	-2.7593					163	40	7	0	0	0	0.011767	10	4587	4561;4565;4571;4575;4581;4587;4593;4607;4615;4621		163.15	43.903	1	1928300			6512	7096	5213	5222	7657;7658;7659;7660;7661;7662;7663;7664;7665;7666	7662					0.07542878928961727
EEIAKVEKL	9	Unmodified	_EEIAKVEKL_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;ENST00000556969.5_1_14:75601590-75614465:-|nuORF;ENST00000555036.1_1_14:75602424-75614456:-|nuORF	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.8092041015625	2	529.808239	1057.60193	-1.0619	-0.0005626	-0.43428	-0.00023008	-1.4962	-0.00079269	529.8081801294821	62.354	2.034	58.897	58.523	60.557	-3.4577					150	41	7	0	0	0	0.0085876	7	4321	4313;4321;4333;4345;4357;4370;4385		176.44	46.435	1	5375200			6513	7096	5213	5222	7667;7668;7669;7670;7671;7672;7673	7668					0.07542878928961727
EEIAKVEKL	9	Unmodified	_EEIAKVEKL_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;ENST00000556969.5_1_14:75601590-75614465:-|nuORF;ENST00000555036.1_1_14:75602424-75614456:-|nuORF	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MATCH	OvCa9_classI_Rep3	3		2	529.808239	1057.60193	1.5733	0.00083356	-1.729	-0.00091605	-0.15569	-8.2487E-05	529.807258426799	61.911	1.2605	58.842	58.363	59.624	-3.0685	-0.021896	-0.00085651	NaN	176.44	49	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16056			6514	7096	5213	5222							0.07542878928961727
EEIDHAVHL	9	Unmodified	_EEIDHAVHL_					0	0	0		ENSG00000164024|ENST00000296411|METAP1	ENSG00000164024|ENST00000296411|METAP1	ENSG00000164024|ENST00000296411|METAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	531.765869140625	2	531.764363	1061.51417	-0.18328	-9.7464E-05	-0.43471	-0.00023116	-0.61799	-0.00032863	531.7639321821597	66.509	0.79797	66.509	66.059	66.857	0					38	19	3	0	0	0	0.19716	1	6164	6164		76.847	11.043	1	3808600			6515	6393	5214	5223	7674	7674					-0.01412321941825212
EEIEDLVARL	10	Unmodified	_EEIEDLVARL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	OvCa9_classI_Rep2	2	593.8196411132812	2	593.819335	1185.62412	0.42905	0.00025478	-0.63897	-0.00037943	-0.20991	-0.00012465	593.8189020934431	127.2	1.333	126.96	126.69	128.02	-0.2359					73	26	4	0	0	0	0.05764	6	12435	12426;12430;12435;12442;12449;12463		126.24	42.783	1	411120			6516	3322	5215	5224	7675;7676;7677;7678;7679;7680	7677					0.03873058606723134
EEIEDLVARL	10	Unmodified	_EEIEDLVARL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	OvCa9_classI_Rep3	3	593.8197021484375	2	593.819335	1185.62412	1.0516	0.00062444	-1.1871	-0.00070495	-0.13558	-8.0513E-05	593.8186234949121	127.89	1.6942	126.8	126.51	128.21	-1.0933					75	33	4	0	0	0	0.10472	3	10055	10055;10061;10076		112.41	30.106	1	292070			6517	3322	5215	5224	7681;7682;7683	7681					0.03873058606723134
EEIEDLVARL	10	Unmodified	_EEIEDLVARL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	593.818115234375	2	593.819335	1185.62412	0.36929	0.00021929	-0.47041	-0.00027934	-0.10112	-6.0046E-05	593.8189617762521	128.17	1.5154	126.74	126.45	127.96	-1.4357					82	29	4	0	0	0	0.24425	2	12257	12257;12269		87.696	14.817	1	392990			6518	3322	5215	5224	7684;7685	7684					0.03873058606723134
EEIERHPQ	8	Unmodified	_EEIERHPQ_					0	0	0			REV__ENST00000578774.1_1_17:38517261-38520175:+|nuORF	REV__ENST00000578774.1_1_17:38517261-38520175:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.3023071289062	2	519.254163	1036.49377	2.0221	0.00105	-4.2053	-0.0021836	-2.1832	-0.0011336	519.2517647570328	89.694	0.94133	88.392	87.987	88.929	-1.302					25	18	2	0	0	0	0.028476	1	7966	7966		27.882	0	1	17722	+		6519	27806	5216	5225	7686	7686					-0.023014926016230675
EEIESAFRAL	10	Unmodified	_EEIESAFRAL_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	OvCa9_classI_Rep2	2	582.7974853515625	2	582.798403	1163.58225	-0.60099	-0.00035026	-0.19673	-0.00011465	-0.79772	-0.00046491	582.7983893126323	105.14	1.4406	104.71	104.36	105.8	-0.43642					102	28	5	0	0	0	0.022295	5	9756	9751;9756;9762;9769;9775		145.16	46.526	1	589610			6520	8736	5217	5226	7687;7688;7689;7690;7691	7688					0.007005029181982536
EEIESAFRAL	10	Unmodified	_EEIESAFRAL_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	OvCa9_classI_Rep3	3	582.7975463867188	2	582.798403	1163.58225	-0.77018	-0.00044886	-0.039845	-2.3222E-05	-0.81003	-0.00047208	582.7984404994638	105.87	1.5973	104.52	103.99	105.59	-1.3482					131	26	6	0	0	0	0.0018446	5	7446	7435;7440;7446;7452;7466		171.53	78.389	1	625400			6521	8736	5217	5226	7692;7693;7694;7695;7696	7694					0.007005029181982536
EEIESAFRAL	10	Unmodified	_EEIESAFRAL_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	582.799560546875	2	582.798403	1163.58225	-1.6401	-0.00095586	1.1036	0.00064318	-0.53652	-0.00031268	582.7990650657005	106.48	1.3989	104.46	104.16	105.55	-2.0161					126	26	6	0	0	0	0.0018446	5	9683	9683;9694;9706;9718;9744		171.53	78.389	1	700090			6522	8736	5217	5226	7697;7698;7699;7700;7701	7697					0.007005029181982536
EEIHFEKIV	9	Unmodified	_EEIHFEKIV_					0	0	0			REV__tr|A0A7D6VQI5|A0A7D6VQI5_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03415PE=4SV=1	REV__tr|A0A7D6VQI5|A0A7D6VQI5_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03415PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	572.3029174804688	2	572.305864	1142.59717	0.16552	9.4731E-05	-3.6482	-0.0020879	-3.4827	-0.0019931	572.3036720278571	45.224	1.3893	45.224	45.023	46.412	0					62	31	3	0	0	0	0.40667	1	3109	3109		51.335	3.6781	1	1264100	+		6523	31328	5218	5227	7702	7702					0.03157994786170093
EEIHYLVYLL	10	Unmodified	_EEIHYLVYLL_					0	0	0			REV__ENSG00000156599|ENST00000287169|ZDHHC5	REV__ENSG00000156599|ENST00000287169|ZDHHC5	MULTI-SECPEP	OvCa99_classI_Rep5	1	431.7681579589844	3	431.23594	1290.68599	0.11948	5.1526E-05	0.93094	0.00040146	1.0504	0.00045298	431.23660730382807	52.975	0.56295	52.975	52.784	53.347	0					23	12	3	0	0	0	0.02706	1	4165	4165		17.468	0	1	195230	+		6524	20488	5219	5228	7703	7703					0.052274100258500766
EEIKIKIT	8	Unmodified	_EEIKIKIT_					0	0	0		ENSG00000188981|ENST00000438480|MSANTD1	ENSG00000188981|ENST00000438480|MSANTD1	ENSG00000188981|ENST00000438480|MSANTD1	MULTI-MSMS	OvCa9_classI_Rep2	2	487.2986755371094	2	487.30005	972.585547	-0.48546	-0.00023656	0.44888	0.00021874	-0.036573	-1.7822E-05	487.3000936662934	64.02	1.681	61.296	60.81	62.491	-2.7245					71	31	4	0	0	0	0.57734	1	4872	4872		68.787	2.3575	1	362570			6525	8521	5220	5229	7704	7704					0.0981579776282615
EEIKKYTTL	9	Unmodified	_EEIKKYTTL_					0	0	0		nc|ENSG00000138756|Q9NSY1-3|BMP2K;nc|ENSG00000138756|Q9NSY1-2|BMP2K;ENSG00000138756|ENST00000502613|BMP2K	nc|ENSG00000138756|Q9NSY1-3|BMP2K	nc|ENSG00000138756|Q9NSY1-3|BMP2K	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.8150024414062	2	562.813522	1123.61249	0.95825	0.00053932	-1.34	-0.00075419	-0.38178	-0.00021487	562.8125608532458	63.367	0.96357	59.892	59.674	60.637	-3.475					35	19	2	0	0	0	0.38969	1	4457	4457		52.937	18.764	1	272580			6526	15047	5221	5230	7705	7705					0.05562861583371159
EEIKKYTTL	9	Unmodified	_EEIKKYTTL_					0	0	0		nc|ENSG00000138756|Q9NSY1-3|BMP2K;nc|ENSG00000138756|Q9NSY1-2|BMP2K;ENSG00000138756|ENST00000502613|BMP2K	nc|ENSG00000138756|Q9NSY1-3|BMP2K	nc|ENSG00000138756|Q9NSY1-3|BMP2K	MULTI-MATCH	OvCa9_classI_Rep2	2		2	562.813522	1123.61249	-1.4865	-0.0008366	0.93517	0.00052633	-0.55128	-0.00031027	562.8139208771273	62.617	0.9247	59.873	59.449	60.374	-2.7444	-0.0095054	0.0013153	NaN	52.937	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78831			6527	15047	5221	5230							0.05562861583371159
EEILKQKELRR	11	Unmodified	_EEILKQKELRR_					0	0	0		ENST00000307403.6_1_7:155532339-155538302:+|nuORF;RBM33|p.A828Pfs*51|1|0.12|ENSG00000184863|chr7:155745104-155745105|-/CCCTTGTGCCCACTATCCCCCTG|frameshift_variant;ENSG00000184863|ENST00000401878|RBM33	ENST00000307403.6_1_7:155532339-155538302:+|nuORF	ENST00000307403.6_1_7:155532339-155538302:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	481.28265380859375	3	481.287697	1440.84126	-6.6786	-0.0032143	-1.9719	-0.00094904	-8.6505	-0.0041634	481.2868612614486	161.01	3.7232	159.65	158.49	162.21	-1.3523					206	77	3	0	0	0	0.72524	1	14052	14052		12.433	1.846	1	127690			6528	8197	5222	5231	7706	7706					0.1384745388011197
EEILLLRSI	9	Unmodified	_EEILLLRSI_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7;nc|ENSG00000118997|Q8WXX0-3|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8128662109375	2	543.331882	1084.64921	-0.86828	-0.00047177	0.49893	0.00027109	-0.36935	-0.00020068	543.3320711034767	70.263	0.88213	70.263	69.84	70.722	0					52	21	4	0	0	0	0.027403	1	6706	6706		60.118	0	1	5232700			6529	3337	5223	5232	7707	7707					0.11027158199954101
EEIQLRVNN	9	Unmodified	_EEIQLRVNN_					0	0	0		nc|ENSG00000112365|O43167-2|ZBTB24;ZBTB24|p.H344Yfs*40|1|0.04|ENSG00000112365|chr6:109476853-109476854|-/TAGTATA|frameshift_variant;ENSG00000112365|ENST00000230122|ZBTB24	nc|ENSG00000112365|O43167-2|ZBTB24	nc|ENSG00000112365|O43167-2|ZBTB24	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.3148803710938	2	557.796195	1113.57784	3.1778	0.0017726	1.6048	0.00089515	4.7826	0.0026677	558.2997901140955	90.237	0.57265	90.237	89.848	90.421	0					38	13	4	0	0	0	0.027118	1	9642	9642		96.19	21.935	1	687430			6530	2901	5224	5233	7708	7708					0.02559038495292043
EEIRAKQDF	9	Unmodified	_EEIRAKQDF_					0	0	0		ENSG00000179477|ENST00000647874|ALOX12B	ENSG00000179477|ENST00000647874|ALOX12B	ENSG00000179477|ENST00000647874|ALOX12B	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2485961914062	2	568.290745	1134.56694	-0.069881	-3.9712E-05	4.3729	0.0024851	4.303	0.0024453	568.2935531879967	30.206	0.29913	30.206	29.986	30.285	0					9	5	2	0	0	0	0.027462	1	1146	1146		32.812	11.865	1	29175			6531	7826	5225	5234	7709	7709					0.005036361209931783
EEIRVLQSH	9	Unmodified	_EEIRVLQSH_					0	0	0		nc|ENSG00000290966|A6NCN2|KRT87P;ENSG00000170442|ENST00000423955|KRT86;CON__O43790	nc|ENSG00000290966|A6NCN2|KRT87P	nc|ENSG00000290966|A6NCN2|KRT87P	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.3682861328125	2	555.798737	1109.58292	0.34465	0.00019156	3.1283	0.0017387	3.4729	0.0019303	555.8005214406093	62.859	0.43748	62.859	62.621	63.058	0					23	10	3	0	0	0	0.027453	1	5635	5635		37.812	9.9293	1	246640		+	6532	611	5226	5235	7710	7710					0.03251342357907561
EEISYTKGKV	10	Unmodified	_EEISYTKGKV_					0	0	0			REV__tr|A0A553SKG7|A0A553SKG7_NIACIPhosphatidylserinedecarboxylaseproenzymeOS=NialliacirculansOX=1397GN=psdPE=3SV=1	REV__tr|A0A553SKG7|A0A553SKG7_NIACIPhosphatidylserinedecarboxylaseproenzymeOS=NialliacirculansOX=1397GN=psdPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.839599609375	2	577.308603	1152.60265	-0.97667	-0.00056384	-1.4361	-0.0008291	-2.4128	-0.0013929	577.3078808553299	28.663	0.39889	28.663	28.39	28.789	0					11	7	2	0	0	0	0.026968	1	932	932		29.17	7.2102	1	41743	+		6533	30123	5227	5236	7711	7711					0.03245673577976049
EEITRKPDL	9	Unmodified	_EEITRKPDL_					0	0	0			REV__tr|A0A7D6ZTX8|A0A7D6ZTX8_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21870PE=4SV=1	REV__tr|A0A7D6ZTX8|A0A7D6ZTX8_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21870PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	550.8001708984375	2	550.800946	1099.58734	-0.57983	-0.00031937	-0.31413	-0.00017302	-0.89396	-0.00049239	550.800982777788	41.336	0.61973	41.336	41.104	41.724	0					38	13	4	0	0	0	0.1804	1	2569	2569		79.713	16.179	1	570930	+		6534	32210	5228	5237	7712	7712					0.041528067808030755
EEITRKPDL	9	Unmodified	_EEITRKPDL_					0	0	0			REV__tr|A0A7D6ZTX8|A0A7D6ZTX8_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21870PE=4SV=1	REV__tr|A0A7D6ZTX8|A0A7D6ZTX8_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21870PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	550.800946	1099.58734	-0.57983	-0.00031937	-0.31413	-0.00017302	-0.89396	-0.00049239	550.800982777788	41.336	0.61973	41.336	41.104	41.724	0	0	0	NaN	79.713	38	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	570930	+		6535	32210	5228	5237							0.041528067808030755
EEKAFWKKLQ	10	Unmodified	_EEKAFWKKLQ_					0	0	0			REV__ENSG00000197140|ENST00000379907|ADAM32	REV__ENSG00000197140|ENST00000379907|ADAM32	MULTI-MSMS	OvCa99_classI_Rep5	1	436.2407531738281	3	436.243317	1305.70812	0.45294	0.00019759	-2.4905	-0.0010864	-2.0375	-0.00088885	436.24219553312173	40.687	0.94087	40.687	40.479	41.42	0					42	20	5	0	0	0	0.35808	1	2486	2486		73.841	13.91	1	904530	+		6536	22896	5229	5238	7713	7713					0.06749634494281054
EEKCVAKLK	9	Unmodified	_EEKCVAKLK_					0	0	0			REV__tr|A0A553SKD2|A0A553SKD2_NIACIS-adenosylmethionine:tRNAribosyltransferase-isomeraseOS=NialliacirculansOX=1397GN=queAPE=3SV=1	REV__tr|A0A553SKD2|A0A553SKD2_NIACIS-adenosylmethionine:tRNAribosyltransferase-isomeraseOS=NialliacirculansOX=1397GN=queAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	524.292236328125	2	524.296985	1046.57942	-0.92224	-0.00048353	-2.0447	-0.001072	-2.967	-0.0015556	524.2957443271708	116.92	1.684	116.79	116.47	118.15	-0.12869					60	33	4	0	0	0	0.1804	1	11187	11187		79.713	2.866	1	635800	+		6537	30110	5230	5239	7714	7714					0.05798956259673105
EEKDKKKEPH	10	Unmodified	_EEKDKKKEPH_					0	0	0		ENSG00000067248|ENST00000251636|DHX29;DHX29|p.G1201Dfs*33|1|0.04|ENSG00000067248|chr5:55262856-55262857|-/GTAAT|frameshift_variant;ENST00000504778.5_1_5:54579003-54603452:-|nuORF	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	MULTI-SECPEP	OvCa99_classI_Rep5	1	423.185546875	3	423.226215	1266.65681	-0.16169	-6.8431E-05	3.7092	0.0015698	3.5475	0.0015014	423.5620450380065	33.657	0.2467	33.657	33.434	33.681	0					6	4	2	0	0	0	0.027221	1	1547	1547		18.531	4.445	1	4232.3			6538	1373	5231	5240	7715	7715					0.034152657295635436
EEKEALVKL	9	Unmodified	_EEKEALVKL_					0	0	0		ENSG00000133302|ENST00000265140|SLF1;nc|ENSG00000133302|Q9BQI6-2|SLF1	ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	MULTI-MSMS	OvCa9_classI_Rep2	2	529.8084106445312	2	529.808239	1057.60193	-1.9861	-0.0010522	1.7049	0.00090325	-0.28122	-0.00014899	529.8090229846803	119.94	1.6785	119.77	119.5	121.17	-0.17138					110	33	6	0	0	0	0.2422	1	11590	11590		69.628	2.134	1	1353600			6539	4216	5232	5241	7716	7716					0.07542878928961727
EEKEELEKK	9	Unmodified	_EEKEELEKK_					0	0	0			REV__tr|A0A7D7A398|A0A7D7A398_9CLOTC40familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20885PE=3SV=1	REV__tr|A0A7D7A398|A0A7D7A398_9CLOTC40familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20885PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.3433227539062	2	581.303518	1160.59248	-0.59126	-0.0003437	1.9485	0.0011327	1.3572	0.00078896	581.3047360445667	30.061	0.30093	30.061	29.935	30.236	0					8	5	2	0	0	0	0.027462	1	1112	1112		37.159	0	1	29179	+		6540	32575	5233	5242	7717	7717					0.018610658527677515
EEKESLIYK	9	Unmodified	_EEKESLIYK_					0	0	0			REV__tr|A0A7D6ZZM8|A0A7D6ZZM8_9CLOTM3familyoligoendopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20960PE=3SV=1	REV__tr|A0A7D6ZZM8|A0A7D6ZZM8_9CLOTM3familyoligoendopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20960PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	569.8017578125	2	569.803154	1137.59175	-1.9391	-0.0011049	-0.69983	-0.00039877	-2.6389	-0.0015037	569.802665430611	38.437	0.89101	35.728	35.469	36.36	-2.7097					39	17	3	0	0	0	0.62335	1	1813	1813		29.17	3.7199	1	168250	+		6541	32415	5234	5243	7718	7718					0.028462712037253368
EEKIDEPI	8	Unmodified	_EEKIDEPI_					0	0	0		nc|ENSG00000162664|Q5BKZ1-3|ZNF326;ENST00000394583.7_1_1:90470639-90493257:+|nuORF;ENSG00000162664|ENST00000340281|ZNF326	nc|ENSG00000162664|Q5BKZ1-3|ZNF326	nc|ENSG00000162664|Q5BKZ1-3|ZNF326	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.283447265625	2	486.747847	971.481142	1.7416	0.00084772	0.9311	0.00045321	2.6727	0.0013009	486.74797678441894	93.099	0.33624	93.099	92.885	93.221	0					12	7	2	0	0	0	0.028476	1	10096	10096		71.296	25.344	1	194590			6542	6213	5235	5244	7719	7719					-0.005739487845289659
EEKIGEPLLP	10	Unmodified	_EEKIGEPLLP_					0	0	0			REV__FNBP4|p.E749Gfs*13|1|0.12|ENSG00000109920|chr11:47724541-47724541|T/-|frameshift_variant	REV__FNBP4|p.E749Gfs*13|1|0.12|ENSG00000109920|chr11:47724541-47724541|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	562.8143310546875	2	562.813522	1123.61249	1.7169	0.0009663	0.16813	9.4628E-05	1.885	0.0010609	562.8135640109886	143.44	1.6242	143.44	143.02	144.64	0					83	32	4	0	0	0	0.6104	1	16821	16821		40.778	0.20554	1	3982000	+		6543	17958	5236	5245	7720	7720					0.055628615833938966
EEKIHDLAL	9	Unmodified	_EEKIHDLAL_					0	0	0		GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant;ENSG00000131459|ENST00000253778|GFPT2	GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant	GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	534.2904052734375	2	534.290214	1066.56587	-1.4533	-0.00077646	0.63253	0.00033795	-0.82073	-0.00043851	534.2903472296807	74.546	1.3546	72.575	72.167	73.521	-1.9711					91	25	4	0	0	0	0.062324	1	6102	6102		111.65	34.874	1	449230			6544	4066	5237	5246	7721	7721					0.03525421752101465
EEKKKKTTTI	10	Unmodified	_EEKKKKTTTI_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-SECPEP	OvCa99_classI_Rep5	1	602.7374267578125	2	603.358628	1204.7027	0.33195	0.00020029	3.8799	0.002341	4.2119	0.0025413	603.3608228884327	57.35	0.21645	57.35	57.221	57.438	0					8	4	2	0	0	0	0.02706	1	4818	4818		23.523	13.817	1	81574			6545	3119	5238	5247	7722	7722					0.10853910911805542
EEKKLQLWLQK	11	Unmodified	_EEKKLQLWLQK_					0	0	0			REV__nc|ENSG00000130038|Q9BSW2-1|CRACR2A	REV__nc|ENSG00000130038|Q9BSW2-1|CRACR2A	MULTI-MSMS	OvCa9_classI_Rep2	2	481.61907958984375	3	481.617043	1441.8293	1.3928	0.00067077	3.2566	0.0015684	4.6494	0.0022392	481.6185706788555	28.734	0.83069	26.024	25.806	26.636	-2.7097					43	17	4	0	0	0	0.72497	1	627	627		15.921	2.4127	1	87409	+		6546	18918	5239	5248	7723	7723					0.12605837136925402
EEKKQKILD	9	Unmodified	_EEKKQKILD_					0	0	0		ENSG00000141404|ENST00000334049|GNAL;nc|ENSG00000141404|P38405|GNAL;ENST00000590972.1_1_18:11752889-11825012:+|nuORF	ENSG00000141404|ENST00000334049|GNAL	ENSG00000141404|ENST00000334049|GNAL	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.7996826171875	2	565.824421	1129.63429	2.1746	0.0012304	-0.21966	-0.00012429	1.9549	0.0011061	565.8241317798162	78.686	0.49831	78.686	78.498	78.996	0					22	11	3	0	0	0	0.02744	1	8005	8005		52.937	3.4952	1	2041800			6547	4909	5240	5249	7724	7724					0.0746566633195016
EEKLKARKL	9	Unmodified	_EEKLKARKL_					0	0	0			REV__ENSG00000129295|ENST00000620350|DNAAF11	REV__ENSG00000129295|ENST00000620350|DNAAF11	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.7693481445312	2	557.850773	1113.68699	1.8447	0.0010291	0.24662	0.00013758	2.0913	0.0011666	558.3505319142589	107.04	0.12924	107.04	106.93	107.06	0					4	2	2	0	0	0	0.027462	1	12049	12049		34.173	3.6689	1	90331	+		6548	18893	5241	5250	7725	7725					0.13469669185428756
EEKLLKEKID	10	Unmodified	_EEKLLKEKID_					0	0	0		tr|A0A7D7A047|A0A7D7A047_9CLOTNitrogenase/oxidoreductasecomponent1domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22600PE=4SV=1	tr|A0A7D7A047|A0A7D7A047_9CLOTNitrogenase/oxidoreductasecomponent1domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22600PE=4SV=1	tr|A0A7D7A047|A0A7D7A047_9CLOTNitrogenase/oxidoreductasecomponent1domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22600PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	414.5909118652344	3	415.574732	1243.70237	-0.19626	-8.1562E-05	1.5319	0.00063661	1.3356	0.00055505	415.5753052818233	56.349	1.3884	53.545	53.175	54.564	-2.804					82	27	4	0	0	0	0.026949	1	4055	4055		42.338	24.505	1	271690			6549	35985	5242	5251	7726	7726					0.09026491191957575
EEKLLKEKID	10	Unmodified	_EEKLLKEKID_					0	0	0		tr|A0A7D7A047|A0A7D7A047_9CLOTNitrogenase/oxidoreductasecomponent1domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22600PE=4SV=1	tr|A0A7D7A047|A0A7D7A047_9CLOTNitrogenase/oxidoreductasecomponent1domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22600PE=4SV=1	tr|A0A7D7A047|A0A7D7A047_9CLOTNitrogenase/oxidoreductasecomponent1domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22600PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	415.574732	1243.70237	0.18849	7.833E-05	0.73266	0.00030448	0.92115	0.00038281	415.5749888345104	57.203	1.4713	53.858	53.577	55.049	-3.3449	0.15645	-0.00078764	NaN	42.338	70	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	333710			6550	35985	5242	5251							0.09026491191957575
EEKLVSSSN	9	Unmodified	_EEKLVSSSN_					0	0	0		TRIP11|p.N1845Tfs*4|1|0.37|ENSG00000100815|chr14:91974669-91974669|G/-|frameshift_variant;nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11;ENST00000548943.1_1_12:106565027-106566212:+|nuORF	TRIP11|p.N1845Tfs*4|1|0.37|ENSG00000100815|chr14:91974669-91974669|G/-|frameshift_variant;ENST00000548943.1_1_12:106565027-106566212:+|nuORF	TRIP11|p.N1845Tfs*4|1|0.37|ENSG00000100815|chr14:91974669-91974669|G/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.24481201171875	2	496.748379	991.482204	-1.0058	-0.00049965	-0.8842	-0.00043922	-1.89	-0.00093887	496.74800374740704	37.173	0.27435	37.173	36.977	37.251	0					9	5	2	0	0	0	0.027462	1	2024	2024		49.536	11.725	1	81722			6551	2108;13566	5243	5252	7727	7727					-0.013877344155957871
EEKPIRKF	8	Unmodified	_EEKPIRKF_					0	0	0		ENST00000262096.12_1_8:17053025-17055120:+|nuORF	ENST00000262096.12_1_8:17053025-17055120:+|nuORF	ENST00000262096.12_1_8:17053025-17055120:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	524.3057250976562	2	523.803291	1045.59203	-0.29641	-0.00015526	1.6522	0.00086541	1.3558	0.00071016	524.3058680052662	32.613	0.98205	32.613	32.254	33.236	0					55	19	6	0	0	0	0.66057	1	1439	1439		51.335	8.861	1	1063700			6552	9880	5244	5253	7728	7728					0.07105735714230832
EEKRLEEEK	9	Unmodified	_EEKRLEEEK_					0	0	0			REV__ENST00000471767.1_1_5:176893910-176894598:-|nuORF;REV__ENSG00000165813|ENST00000369287|CCDC186	REV__ENSG00000165813|ENST00000369287|CCDC186	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.3056640625	2	595.306592	1188.59863	-0.31457	-0.00018726	0.98784	0.00058807	0.67327	0.0004008	595.3074882023523	48.225	0.17579	48.225	48.073	48.248	0					5	3	2	0	0	0	0.027461	1	3515	3515		49.442	5.3247	1	56982	+		6553	18169;21123	5245	5254	7729	7729					0.011875840842549223
EEKRRRKED	9	Unmodified	_EEKRRRKED_					0	0	0			REV__nc|ENSG00000196586|Q9UM54-5|MYO6	REV__nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-MSMS	OvCa9_classI_Rep4_	4	623.334716796875	2	623.33655	1244.65855	-2.9225	-0.0018217	0.37237	0.00023211	-2.5501	-0.0015896	623.3365800875661	150.92	1.7074	149.49	148.37	150.08	-1.4344					84	37	3	0	0	0	0.61365	1	14907	14907		30.318	2.2362	1	33269	+		6554	22846	5246	5255	7730	7730					0.04600319538167241
EEKRRRKED	9	Unmodified	_EEKRRRKED_					0	0	0			REV__nc|ENSG00000196586|Q9UM54-5|MYO6	REV__nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	623.33655	1244.65855	-3.6478	-0.0022738	1.133	0.00070621	-2.5148	-0.0015676	623.3369735816198	150.43	1.5622	149.47	148.44	150.01	-0.95647	-0.0070514	0.00067768	NaN	30.318	66	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25311	+		6555	22846	5246	5255							0.04600319538167241
EEKSAVTAL	9	Unmodified	_EEKSAVTAL_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.25689697265625	2	474.25584	946.497126	0.656	0.00031111	-0.94884	-0.00044999	-0.29283	-0.00013888	474.25516845466626	61.757	1.934	58.299	57.516	59.45	-3.4577					80	39	5	0	0	0	0.059253	1	4257	4257		113.41	14.037	1	811690		+	6556	9402	5247	5256	7731	7731					0.02173757452362679
EEKSNAQLK	9	Unmodified	_EEKSNAQLK_					0	0	0			REV__tr|A0A7D6VPK8|A0A7D6VPK8_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_23420PE=3SV=1	REV__tr|A0A7D6VPK8|A0A7D6VPK8_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_23420PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	524.3094482421875	2	523.77747	1045.54039	-1.0446	-0.00054713	3.4412	0.0018024	2.3966	0.0012553	523.7794389699004	116.84	1.0406	115.8	115.54	116.58	-1.0414					26	20	2	0	0	0	0.027461	1	8830	8830		58.782	28.464	1	24010	+		6557	31257	5248	5257	7732	7732					0.019439472296653548
EEKSWRLL	8	Unmodified	_EEKSWRLL_					0	0	0			REV__ENSG00000205476|ENST00000380243|CCDC85C	REV__ENSG00000205476|ENST00000380243|CCDC85C	MULTI-MSMS	OvCa99_classI_Rep5	1	530.7890625	2	530.792924	1059.57129	-0.50002	-0.00026541	-2.0118	-0.0010678	-2.5118	-0.0013333	530.7909995790421	24.732	0.30235	24.732	24.586	24.888	0					8	5	2	0	0	0	0.74229	1	485	485		30.504	3.8107	1	57826	+		6558	23217	5249	5258	7733	7733					0.04389145334562272
EEKTPSLEIK	10	Unmodified	_EEKTPSLEIK_					0	0	0		tr|A0A553SQT5|A0A553SQT5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07245PE=4SV=1	tr|A0A553SQT5|A0A553SQT5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07245PE=4SV=1	tr|A0A553SQT5|A0A553SQT5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07245PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	588.3092041015625	2	587.321711	1172.62887	-0.064952	-3.8148E-05	0.28834	0.00016935	0.22339	0.0001312	587.3216213954626	64.528	0.78008	61.042	60.675	61.456	-3.4854					26	15	2	0	0	0	0.027225	1	4646	4646		118.74	13.997	1	156440			6559	34195	5250	5259	7734	7734					0.049459427494639385
EEKVEVKI	8	Unmodified	_EEKVEVKI_					0	0	0			REV__ENSG00000079819|ENST00000337057|EPB41L2	REV__ENSG00000079819|ENST00000337057|EPB41L2	MULTI-MSMS	OvCa99_classI_Rep5	1	487.283447265625	2	487.281857	972.549162	1.4254	0.00069459	0.52354	0.00025511	1.949	0.0009497	487.28202861475404	93.284	1.5017	93.284	92.762	94.264	0					55	35	2	0	0	0	0.37357	1	10096	10096		93.195	2.5946	1	16218000	+		6560	17046	5251	5260	7735	7735					0.06178920866148019
EELAAEKERL	10	Unmodified	_EELAAEKERL_					0	0	0			REV__nc|ENSG00000121931|Q5T3J3-2|LRIF1	REV__nc|ENSG00000121931|Q5T3J3-2|LRIF1	MULTI-MSMS	OvCa99_classI_Rep5	1	594.3169555664062	2	594.31696	1186.61937	1.1161	0.00066333	3.0067	0.0017869	4.1228	0.0024503	594.319026729879	150.82	0.6546	150.82	150.59	151.25	0					20	12	3	0	0	0	0.6349	1	17663	17663		37.812	12.237	1	32858	+		6561	18566	5252	5261	7736	7736					0.03352174463952906
EELASARKPI	10	Unmodified	_EELASARKPI_					0	0	0			REV__ENST00000593991.5_3_19:16741295-16758047:-|nuORF	REV__ENST00000593991.5_3_19:16741295-16758047:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	557.31787109375	2	557.316763	1112.61897	-1.9914	-0.0011099	2.7107	0.0015107	0.71932	0.00040089	557.3181775816473	36.131	1.4315	33.421	33.152	34.583	-2.7097					66	28	4	0	0	0	0.762	1	1554	1554		23.523	0.94304	1	384370	+		6562	27973	5253	5262	7737	7737					0.06716799534751772
EELATKVLE	9	Unmodified	_EELATKVLE_					0	0	0		tr|A0A7D6W0A2|A0A7D6W0A2_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_23010PE=4SV=1	tr|A0A7D6W0A2|A0A7D6W0A2_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_23010PE=4SV=1	tr|A0A7D6W0A2|A0A7D6W0A2_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_23010PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	516.2855224609375	2	516.284597	1030.55464	-0.48899	-0.00025246	1.2646	0.0006529	0.77562	0.00040044	516.285153684191	57.372	1.6977	54.58	54.03	55.728	-2.792					82	33	3	0	0	0	0.54012	1	4109	4109		38.754	0.94209	1	519060			6563	35374	5254	5263	7738	7738					0.040585996579466155
EELDSQIVQL	10	Unmodified	_EELDSQIVQL_					0	0	0			REV__tr|A0A553SMC0|A0A553SMC0_NIACIAldehydedehydrogenasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_22295PE=3SV=1	REV__tr|A0A553SMC0|A0A553SMC0_NIACIAldehydedehydrogenasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_22295PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.3396606445312	2	587.303518	1172.59248	-0.33561	-0.0001971	2.5131	0.001476	2.1775	0.0012789	587.3048168058386	71.273	0.35723	71.273	71.109	71.466	0					19	8	3	0	0	0	0.026994	1	6898	6898		32.812	8.2932	1	609620	+		6564	30313	5255	5264	7739	7739					0.013090658527517007
EELEEEIPV	9	Unmodified	_EELEEEIPV_					0	0	0		ENSG00000120820|ENST00000360814|GLT8D2	ENSG00000120820|ENST00000360814|GLT8D2	ENSG00000120820|ENST00000360814|GLT8D2	MULTI-SECPEP	OvCa9_classI_Rep3	3	544.3031005859375	2	543.763694	1085.51284	-0.1946	-0.00010582	0.029098	1.5823E-05	-0.1655	-8.9995E-05	544.266879498752	78.629	0.59711	76.276	76.048	76.645	-2.3527					17	10	2	0	0	0	0.027417	1	4165	4165		55.504	0	1	52237			6565	3455	5256	5265	7740	7740					-0.026500008212224202
EELEGAAPMPQ	11	Unmodified	_EELEGAAPMPQ_					0	0	0			REV__ENSG00000184922|ENST00000331495|FMNL1	REV__ENSG00000184922|ENST00000331495|FMNL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.3396606445312	2	586.268621	1170.52269	-0.32488	-0.00019047	-4.0091	-0.0023504	-4.334	-0.0025409	586.2659493238048	71.49	0.56895	71.49	71.308	71.877	0					27	13	3	0	0	0	0.025594	1	6898	6898		27.047	0	1	722200	+		6566	22457	5257	5266	7741	7741					-0.055751360874864986
EELERLKQA	9	Unmodified	_EELERLKQA_					0	0	0			REV__ENSG00000102221|ENST00000614628|JADE3	REV__ENSG00000102221|ENST00000614628|JADE3	MULTI-SECPEP	OvCa9_classI_Rep3	3	557.3307495117188	2	558.306395	1114.59824	-1.0491	-0.00058569	1.4239	0.000795	0.37489	0.00020931	558.307388192706	81.722	0.95621	79.4	79.106	80.062	-2.3226					27	18	2	0	0	0	0.027462	1	4551	4551		35.618	1.4457	1	47002	+		6567	17544	5258	5267	7742	7742					0.04552209155099263
EELFRAGL	8	Unmodified	_EELFRAGL_					0	0	0		sp|P09701|US23_HCMVATegumentproteinUS23OS=Humancytomegalovirus(strainAD169)OX=10360GN=US23PE=3SV=2;sp|F5HAZ3|US23_HCMVMProteinUS23OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US23PE=3SV=1	sp|P09701|US23_HCMVATegumentproteinUS23OS=Humancytomegalovirus(strainAD169)OX=10360GN=US23PE=3SV=2	sp|P09701|US23_HCMVATegumentproteinUS23OS=Humancytomegalovirus(strainAD169)OX=10360GN=US23PE=3SV=2	MULTI-MSMS	OvCa99_classI_Rep5	1	468.256591796875	2	467.753267	933.491981	-0.24424	-0.00011424	2.492	0.0011656	2.2477	0.0010514	467.75433159510914	60.045	1.1728	60.045	59.686	60.859	0					73	28	4	0	0	0	0.59148	1	5196	5196		65.803	7.0212	1	3666300			6568	32850	5259	5268	7743	7743					0.022574983804247495
EELGGAFDYST	11	Unmodified	_EELGGAFDYST_					0	0	0		tr|A0A7D6ZXZ0|A0A7D6ZXZ0_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00095PE=4SV=1	tr|A0A7D6ZXZ0|A0A7D6ZXZ0_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00095PE=4SV=1	tr|A0A7D6ZXZ0|A0A7D6ZXZ0_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00095PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.9392700195312	2	594.756401	1187.49825	-0.12953	-7.7041E-05	-2.1069	-0.0012531	-2.2364	-0.0013301	594.755036475009	71.452	0.51645	71.452	71.191	71.707	0					26	12	3	0	0	0	0.025806	1	6920	6920		24.519	9.6543	1	981880			6569	35900	5260	5269	7744	7744					-0.08800072969393113
EELGIRIPRPL	11	Unmodified	_EELGIRIPRPL_					0	0	0		nc|ENSG00000080546|Q9Y6P5|SESN1	nc|ENSG00000080546|Q9Y6P5|SESN1	nc|ENSG00000080546|Q9Y6P5|SESN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	432.23553466796875	3	431.59435	1291.76122	-0.84148	-0.00036318	-4.0842	-0.0017627	-4.9257	-0.0021259	431.592521017835	34.674	0.41996	34.674	34.398	34.818	0					12	8	2	0	0	0	0.025955	1	1699	1699		18.531	4.445	1	15322			6570	14899	5261	5270	7745	7745					0.12701012276920665
EELIGQSHWG	10	Unmodified	_EELIGQSHWG_					0	0	0			REV__ENST00000372427.5_1_1:43917099-43918100:-|nuORF	REV__ENST00000372427.5_1_1:43917099-43918100:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	578.2757568359375	2	578.275095	1154.53564	1.4704	0.0008503	2.1621	0.0012503	3.6325	0.0021006	578.2760998983272	134.66	0.93428	134.66	134.47	135.41	0					52	20	3	0	0	0	0.64697	1	15719	15719		36.447	2.2742	1	447360	+		6571	25003	5262	5271	7746	7746					-0.03544936913090169
EELILHAH	8	Unmodified	_EELILHAH_					0	0	0		nc|ENSG00000086717|O14829-2|PPEF1	nc|ENSG00000086717|O14829-2|PPEF1	nc|ENSG00000086717|O14829-2|PPEF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.7581787109375	2	481.258717	960.50288	0.58849	0.00028322	2.3956	0.0011529	2.9841	0.0014361	481.2597462730573	37.642	1.3412	34.75	34.541	35.883	-2.8925					34	26	2	0	0	0	0.028476	1	1472	1472		21.702	3.3779	1	22280			6572	14907	5263	5272	7747	7747					0.02104900754704886
EELKLKHGSL	10	Unmodified	_EELKLKHGSL_					0	0	0		tr|A0A553SNG6|A0A553SNG6_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24330PE=4SV=1	tr|A0A553SNG6|A0A553SNG6_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24330PE=4SV=1	tr|A0A553SNG6|A0A553SNG6_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24330PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	577.3305053710938	2	577.332413	1152.65027	2.0371	0.0011761	-0.0090206	-5.2079E-06	2.0281	0.0011709	577.3322485711252	80.119	1.2231	80.119	79.436	80.659	0					70	29	3	0	0	0	0.45822	1	8213	8213		60.118	12.159	1	1315300			6573	33927	5264	5273	7748	7748					0.08005372568845814
EELKLLEEKL	10	Unmodified	_EELKLLEEKL_					0	0	0		nc|ENSG00000072571|O75330-2|HMMR;nc|ENSG00000072571|O75330-4|HMMR;nc|ENSG00000072571|O75330|HMMR;ENSG00000072571|ENST00000393915|HMMR	nc|ENSG00000072571|O75330-2|HMMR	nc|ENSG00000072571|O75330-2|HMMR	MSMS	OvCa99_classI_Rep5	1	622.3624877929688	2	622.360836	1242.70712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.697	1	94.697	94.197	95.197	0								0	0	0	0.10151	1	10315	10315		94.409	0	1				6574	14889	5265	5274	7749	7749					0.09547375334705066
EELKRALREY	10	Unmodified	_EELKRALREY_					0	0	0		tr|A0A7D6ZY05|A0A7D6ZY05_9CLOTABC-FfamilyATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01335PE=4SV=1	tr|A0A7D6ZY05|A0A7D6ZY05_9CLOTABC-FfamilyATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01335PE=4SV=1	tr|A0A7D6ZY05|A0A7D6ZY05_9CLOTABC-FfamilyATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01335PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.2412414550781	3	436.241976	1305.7041	0.22667	9.8884E-05	-2.5193	-0.001099	-2.2926	-0.0010001	436.24089196043764	21.376	1.5844	20.038	19.646	21.231	-1.3386					77	31	3	0	0	0	0.75568	1	175	175		24.232	1.4504	1	808510			6575	35903	5266	5275	7750	7750					0.06347545000562604
EELLDTTQPA	10	Unmodified	_EELLDTTQPA_					0	0	0		ENST00000471501.1_1_1:11709834-11710766:-|nuORF;ENSG00000116661|ENST00000354287|FBXO2	ENST00000471501.1_1_1:11709834-11710766:-|nuORF	ENST00000471501.1_1_1:11709834-11710766:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.2883911132812	2	558.774593	1115.53463	1.8328	0.0010241	-2.0272	-0.0011327	-0.19438	-0.00010861	559.2749764601444	130.79	0.99971	130.79	130.2	131.2	0					28	20	2	0	0	0	0.027145	1	15109	15109		24.519	0	1	52571			6576	3191	5267	5276	7751	7751					-0.018511960726755206
EELLFSHKL	9	Unmodified	_EELLFSHKL_					0	0	0		nc|ENSG00000172661|Q9Y4E1-5|WASHC2C;nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000172661|ENST00000623400|WASHC2C;ENSG00000099290|ENST00000282633|WASHC2A;ENST00000374359.1_1_10:46274511-46281094:+|nuORF	nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	MULTI-MSMS	OvCa9_classI_Rep2	2	558.3082885742188	2	558.308406	1114.60226	0.46283	0.0002584	-2.0153	-0.0011252	-1.5525	-0.00086675	558.3071022976554	86.425	2.2285	84.934	84.047	86.276	-1.4906					114	43	4	0	0	0	0.018335	3	7517	7511;7517;7525		148.99	47.386	1	570260			6577	1966	5268	5277	7752;7753;7754	7753					0.04954298648817712
EELLFSHKL	9	Unmodified	_EELLFSHKL_					0	0	0		nc|ENSG00000172661|Q9Y4E1-5|WASHC2C;nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000172661|ENST00000623400|WASHC2C;ENSG00000099290|ENST00000282633|WASHC2A;ENST00000374359.1_1_10:46274511-46281094:+|nuORF	nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.3096923828125	2	558.308406	1114.60226	-0.9473	-0.00052888	-1.3308	-0.00074301	-2.2781	-0.0012719	558.3075129766521	87.652	1.7116	85.025	84.698	86.41	-2.6269					85	33	4	0	0	0	0.014622	3	7456	7456;7466;7480		154.12	50.062	1	646800			6578	1966	5268	5277	7755;7756;7757	7755					0.04954298648817712
EELLIKKL	8	Unmodified	_EELLIKKL_					0	0	0			REV__ENSG00000131910|ENST00000254227|NR0B2	REV__ENSG00000131910|ENST00000254227|NR0B2	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.806396484375	2	493.318243	984.621933	0.99599	0.00049134	1.3068	0.00064469	2.3028	0.001136	493.318739595145	105.8	0.3502	105.8	105.57	105.92	0					11	7	2	0	0	0	0.028476	1	11884	11884		97.473	23.498	1	144330	+		6579	19042	5269	5278	7758	7758					0.12900674659567812
EELLLLQTPIP	11	Unmodified	_EELLLLQTPIP_					0	0	0		ENSG00000147183|ENST00000276127|CPXCR1	ENSG00000147183|ENST00000276127|CPXCR1	ENSG00000147183|ENST00000276127|CPXCR1	MSMS	OvCa9_classI_Rep4_	4	633.3697509765625	2	633.371204	1264.72785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	153.99	1	152.53	152.03	153.03	-1.4516								0	0	0	0.19402	1	15246	15246		34.173	7.4796	1				6580	5340	5270	5279	7759	7759					0.10607965714393686
EELLQDLAQ	9	Unmodified	_EELLQDLAQ_					0	0	0		SDAD1|p.F439Lfs*23|1|0.1|ENSG00000198301|chr4:75961070-75961071|-/TCCAATCATAAATCCTGTTAAC|frameshift_variant;ENSG00000198301|ENST00000356260|SDAD1;ENST00000441308.1_1_20:10367413-10367935:+|nuORF;nc|ENSG00000198301|Q9NVU7-2|SDAD1;ENST00000395710.5_1_4:76871905-76902632:-|nuORF	SDAD1|p.F439Lfs*23|1|0.1|ENSG00000198301|chr4:75961070-75961071|-/TCCAATCATAAATCCTGTTAAC|frameshift_variant	SDAD1|p.F439Lfs*23|1|0.1|ENSG00000198301|chr4:75961070-75961071|-/TCCAATCATAAATCCTGTTAAC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.3015747070312	2	529.771854	1057.52915	-0.92971	-0.00049253	-2.3522	-0.0012461	-3.2819	-0.0017387	529.7708728469572	47.175	0.80776	44.102	43.759	44.566	-3.0724					22	15	2	0	0	0	0.027447	1	2527	2527		56.721	0	1	62516			6581	8805	5271	5280	7760	7760					0.002691251355145141
EELLVKELP	9	Unmodified	_EELLVKELP_					0	0	0			REV__ENST00000477777.1_1_X:153713880-153714433:-|nuORF	REV__ENST00000477777.1_1_X:153713880-153714433:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.3372192382812	2	535.310615	1068.60668	-2.0285	-0.0010859	-0.41145	-0.00022025	-2.44	-0.0013061	535.3102942844695	50.432	1.1894	47.638	46.983	48.172	-2.794					40	23	3	0	0	0	0.027462	1	3181	3181		44.117	16.235	1	58479	+		6582	17541	5272	5281	7761	7761					0.07511763071715905
EELNVELQTPP	11	Unmodified	_EELNVELQTPP_					0	0	0			REV__ENST00000529874.5_1_11:118980840-118984381:+|nuORF	REV__ENST00000529874.5_1_11:118980840-118984381:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	423.185546875	3	423.550475	1267.6296	-0.052947	-2.2426E-05	-3.859	-0.0016345	-3.9119	-0.0016569	423.882998144501	33.42	0.39521	33.42	33.285	33.681	0					9	7	2	0	0	0	0.026174	1	1547	1547		17.167	0	1	13767	+		6583	21695	5273	5282	7762	7762					0.006487373985009981
EELPLPRRLSL	11	Unmodified	_EELPLPRRLSL_					0	0	0		ENST00000541086.5_1_14:103389974-103397014:+|nuORF;ENSG00000166126|ENST00000299155|AMN	ENST00000541086.5_1_14:103389974-103397014:+|nuORF	ENST00000541086.5_1_14:103389974-103397014:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	441.24676513671875	3	441.597871	1321.77178	-1.2022	-0.00053089	3.3986	0.0015008	2.1964	0.00096993	441.5994176205401	54.722	0.82115	51.474	51.183	52.004	-3.2474					39	15	4	0	0	0	0.025995	1	3455	3455		29.551	4.4248	1	28122			6584	6639	5274	5283	7763	7763					0.12376994931378249
EELPSWIKI	9	Unmodified	_EELPSWIKI_					0	0	0			REV__nc|ENSG00000143164|Q58WW2|DCAF6	REV__nc|ENSG00000143164|Q58WW2|DCAF6	MULTI-MSMS	OvCa99_classI_Rep5	1	557.8033447265625	2	557.810782	1113.60701	1.2956	0.00072271	1.1364	0.00063392	2.4321	0.0013566	557.8111507094333	131.73	0.78802	131.73	131.53	132.32	0					31	16	4	0	0	0	0.42676	1	15307	15307		49.442	1.7842	1	232920	+		6585	19820	5275	5284	7764	7764					0.05475182791565203
EELPSWIKI	9	Unmodified	_EELPSWIKI_					0	0	0			REV__nc|ENSG00000143164|Q58WW2|DCAF6	REV__nc|ENSG00000143164|Q58WW2|DCAF6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	557.810782	1113.60701	1.0804	0.00060268	-2.1492	-0.0011989	-1.0688	-0.00059619	557.8094418586934	132.02	0.73056	131.79	131.45	132.18	-0.22697	0.065893	-0.00011699	NaN	49.442	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14769	+		6586	19820	5275	5284							0.05475182791565203
EELPSWIKI	9	Unmodified	_EELPSWIKI_					0	0	0			REV__nc|ENSG00000143164|Q58WW2|DCAF6	REV__nc|ENSG00000143164|Q58WW2|DCAF6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	557.810782	1113.60701	-0.66211	-0.00036933	-0.068065	-3.7968E-05	-0.73017	-0.0004073	557.8106998038076	132.85	1.0797	131.73	131.49	132.56	-1.1249	-0.0012014	0.0022048	NaN	49.442	29	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12685	+		6587	19820	5275	5284							0.05475182791565203
EELPSWIKI	9	Unmodified	_EELPSWIKI_					0	0	0			REV__nc|ENSG00000143164|Q58WW2|DCAF6	REV__nc|ENSG00000143164|Q58WW2|DCAF6	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	557.810782	1113.60701	4.291	0.0023936	-5.6676	-0.0031615	-1.3766	-0.00076789	557.8074261542771	133.19	0.97708	131.66	131.36	132.34	-1.5257	-0.066937	-0.0040422	NaN	49.442	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23148	+		6588	19820	5275	5284							0.05475182791565203
EELPVDIIL	9	Unmodified	_EELPVDIIL_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	OvCa99_classI_Rep5	1	520.7981567382812	2	520.79734	1039.58013	0.11054	5.7571E-05	1.3397	0.0006977	1.4502	0.00075527	520.7978671803645	160.11	0.95288	160.11	159.86	160.81	0					42	18	4	0	0	0	0.19716	1	18780	18780		76.847	8.0598	1	504620			6589	7955	5276	5285	7765	7765					0.06192074180376039
EELQKVKI	8	Unmodified	_EELQKVKI_					0	0	0			REV__ENST00000460114.1_1_2:197565847-197576979:+|nuORF	REV__ENST00000460114.1_1_2:197565847-197576979:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	494.301513671875	2	493.797675	985.580796	1.4453	0.00071366	0.72222	0.00035663	2.1675	0.0010703	493.79794873816036	98.143	0.64027	98.143	97.912	98.552	0					41	14	4	0	0	0	0.12224	1	10790	10790		138.24	1.9741	1	8803300	+		6590	19908	5277	5286	7766	7766					0.08742913620085346
EELQLARTKL	10	Unmodified	_EELQLARTKL_					0	0	0			REV__ENSG00000168071|ENST00000356786|CCDC88B;REV__nc|ENSG00000168071|A6NC98-5|CCDC88B	REV__nc|ENSG00000168071|A6NC98-5|CCDC88B	MULTI-MSMS	OvCa99_classI_Rep5	1	400.9043884277344	3	400.903072	1199.68739	1.2092	0.00048479	-1.2648	-0.00050706	-0.055545	-2.2268E-05	400.9025164128876	53.108	1.4333	53.108	52.259	53.692	0					59	32	3	0	0	0	0.14958	1	4206	4206		102.06	5.306	1	1689400	+		6591	21344;28988	5278	5287	7767	7767					0.09553044114591103
EELRIAAR	8	Unmodified	_EELRIAAR_					0	0	0		tr|A0A553SK10|A0A553SK10_NIACIReplicationinitiationandmembraneattachmentproteinOS=NialliacirculansOX=1397GN=CEQ21_17900PE=4SV=1	tr|A0A553SK10|A0A553SK10_NIACIReplicationinitiationandmembraneattachmentproteinOS=NialliacirculansOX=1397GN=CEQ21_17900PE=4SV=1	tr|A0A553SK10|A0A553SK10_NIACIReplicationinitiationandmembraneattachmentproteinOS=NialliacirculansOX=1397GN=CEQ21_17900PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.81976318359375	2	479.277441	956.540328	0.28695	0.00013753	-0.10412	-4.9904E-05	0.18283	8.7625E-05	479.2770325708418	62.949	0.40264	62.949	62.777	63.179	0					20	9	3	0	0	0	0.028476	1	5648	5648		42.396	9.5837	1	630670			6592	33564	5279	5288	7768	7768					0.06031992020302823
EELRKEIMQ	9	Unmodified	_EELRKEIMQ_					0	0	0		ENST00000461882.1_1_7:76871694-76888407:+|nuORF;ENSG00000135205|ENST00000285871|CCDC146	ENST00000461882.1_1_7:76871694-76888407:+|nuORF	ENST00000461882.1_1_7:76871694-76888407:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	588.306884765625	2	588.308081	1174.60161	-1.0695	-0.0006292	1.0508	0.0006182	-0.018703	-1.1003E-05	588.3085738686653	63.984	2.3836	61.259	60.708	63.092	-2.7248					124	45	5	0	0	0	0.22621	1	4890	4890		71.877	8.3436	1	1044000			6593	4357	5280	5289	7769	7769					0.02129135937434512
EELRLLQIIRQ	11	Unmodified	_EELRLLQIIRQ_					0	0	0		nc|ENSG00000213213|Q5T5S1-2|CCDC183;ENSG00000213213|ENST00000338005|CCDC183;nc|ENSG00000213213|Q5T5S1-3|CCDC183;ENST00000415992.5_1_9:139693810-139699267:+|nuORF;nc|ENSG00000213213|Q5T5S1-4|CCDC183;ENST00000430612.5_1_9:139694306-139700853:+|nuORF;ENST00000371682.7_1_9:139690828-139700853:+|nuORF;ENST00000609471.1_1_9:139694564-139695182:+|nuORF	nc|ENSG00000213213|Q5T5S1-2|CCDC183;ENST00000609471.1_1_9:139694564-139695182:+|nuORF	nc|ENSG00000213213|Q5T5S1-2|CCDC183	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.7467041015625	3	470.952426	1409.83545	0.26082	0.00012283	2.5149	0.0011844	2.7757	0.0013072	470.95355861499974	64.697	0.49248	64.697	64.503	64.995	0					27	11	3	0	0	0	0.026302	1	5875	5875		22.562	10.629	1	987620			6594	9122;14304	5281	5290	7770	7770					0.14692355368447352
EELRNKIVD	9	Unmodified	_EELRNKIVD_					0	0	0		nc|ENSG00000119411|Q5W0U4-2|BSPRY;ENST00000462085.1_1_9:116111859-116131917:+|nuORF;ENSG00000119411|ENST00000374183|BSPRY	nc|ENSG00000119411|Q5W0U4-2|BSPRY	nc|ENSG00000119411|Q5W0U4-2|BSPRY	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.3296508789062	2	558.306395	1114.59824	0.040718	2.2733E-05	-0.46423	-0.00025918	-0.42352	-0.00023645	558.3061869160326	82.109	0.62625	79.426	79.156	79.782	-2.6829					18	12	2	0	0	0	0.027462	1	6754	6754		39.253	11.371	1	46596			6595	3361	5282	5291	7771	7771					0.04552209155099263
EELRQPPV	8	Unmodified	_EELRQPPV_					0	0	0		DCAF6-PBX1|6|fusion;DCAF6-PBX1|3|fusion;DCAF6-PBX1|5|fusion;DCAF6-PBX1|4|fusion;DCAF6-PBX1|2|fusion;DCAF6-PBX1|1|fusion;ENST00000560524.1_1_15:29526351-29527221:-|nuORF;nc|ENSG00000143164|Q58WW2|DCAF6;nc|ENSG00000143164|Q58WW2-2|DCAF6;nc|ENSG00000143164|Q58WW2-4|DCAF6;ENSG00000143164|ENST00000367840|DCAF6	DCAF6-PBX1|6|fusion	DCAF6-PBX1|6|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.2706298828125	2	484.263999	966.513445	-0.13396	-6.4874E-05	0.84417	0.0004088	0.7102	0.00034393	484.2643499901584	66.585	0.36777	66.585	66.372	66.739	0					15	8	3	0	0	0	0.028476	1	6176	6176		24.203	0	1	806040			6596	711	5283	5292	7772	7772					0.028848834091377284
EELRWLLAL	9	Unmodified	_EELRWLLAL_					0	0	0			REV__ENST00000422154.6_1_X:102941599-102941659:-|nuORF	REV__ENST00000422154.6_1_X:102941599-102941659:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	571.8456420898438	2	571.832049	1141.64954	-1.5795	-0.0009032	1.7186	0.00098278	0.13916	7.9575E-05	571.8326584441996	121.27	0.98937	121.07	120.8	121.79	-0.19718					44	19	3	0	0	0	0.027448	1	11719	11719		44.117	6.9577	1	54502	+		6597	25617	5284	5293	7773	7773					0.08438577919810086
EELRYSLRS	9	Unmodified	_EELRYSLRS_					0	0	0		ENSG00000111670|ENST00000299314|GNPTAB;nc|ENSG00000111670|Q3T906-2|GNPTAB	ENSG00000111670|ENST00000299314|GNPTAB	ENSG00000111670|ENST00000299314|GNPTAB	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.2728271484375	2	576.80402	1151.59349	-0.37056	-0.00021374	0.28304	0.00016326	-0.087526	-5.0486E-05	576.8041341531205	58.57	0.69527	58.57	58.237	58.932	0					27	14	3	0	0	0	0.027462	1	4956	4956		37.812	22.947	1	988920			6598	2842	5285	5294	7774	7774					0.02375325012326357
EELSAYRIKL	10	Unmodified	_EELSAYRIKL_					0	0	0			REV__tr|A0A7D6VVE1|A0A7D6VVE1_9CLOTChromosomepartitionproteinSmcOS=ClostridiumintestinaleOX=36845GN=smcPE=3SV=1	REV__tr|A0A7D6VVE1|A0A7D6VVE1_9CLOTChromosomepartitionproteinSmcOS=ClostridiumintestinaleOX=36845GN=smcPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.5487976074219	3	407.899439	1220.67649	0.74084	0.00030219	0.36588	0.00014924	1.1067	0.00045143	407.8995454698964	40.484	0.41875	40.484	40.247	40.666	0					14	8	2	0	0	0	0.026975	1	2442	2442		14.086	13.088	1	57333	+		6599	31716	5286	5295	7775	7775					0.07497641740314975
EELSKLIVKY	10	Unmodified	_EELSKLIVKY_					0	0	0		tr|A0A7D6ZE96|A0A7D6ZE96_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12805PE=4SV=1	tr|A0A7D6ZE96|A0A7D6ZE96_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12805PE=4SV=1	tr|A0A7D6ZE96|A0A7D6ZE96_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12805PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	611.35400390625	2	611.358096	1220.70164	-2.3862	-0.0014588	-1.0817	-0.0006613	-3.4678	-0.0021201	611.3572929291362	147.43	3.7918	146.48	144.56	148.35	-0.9512					254	75	5	0	0	0	0.80581	1	12578	12578		18.262	1.5447	1	250910			6600	35478	5287	5296	7776	7776					0.1001169654291516
EELSRLLL	8	Unmodified	_EELSRLLL_					0	0	0		ENSG00000278619|ENST00000614766|MRM1	ENSG00000278619|ENST00000614766|MRM1	ENSG00000278619|ENST00000614766|MRM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.283447265625	2	486.78985	971.565146	1.8398	0.0008956	0.71623	0.00034865	2.556	0.0012443	486.78986236862676	93.044	0.37658	93.044	92.845	93.221	0					12	8	2	0	0	0	0.028476	1	10096	10096		63.306	0	1	463070			6601	9591	5288	5297	7777	7777					0.07822627103041668
EELSSVPDV	9	Unmodified	_EELSSVPDV_					0	0	0			REV__ENSG00000182489|ENST00000372956|XKRX	REV__ENSG00000182489|ENST00000372956|XKRX	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.78045654296875	2	487.73748	973.460406	-1.1265	-0.00054946	-1.9414	-0.00094687	-3.0679	-0.0014963	487.7363754245876	73.055	0.96749	69.659	69.204	70.172	-3.3961					46	19	3	0	0	0	0.027456	1	5678	5678		47.916	15.961	1	143430	+		6602	22297	5289	5298	7778	7778					-0.02738539164181475
EELSTYAPKI	10	Unmodified	_EELSTYAPKI_					0	0	0		tr|A0A553SNV9|A0A553SNV9_NIACIPolyribonucleotidenucleotidyltransferaseOS=NialliacirculansOX=1397GN=pnpPE=3SV=1	tr|A0A553SNV9|A0A553SNV9_NIACIPolyribonucleotidenucleotidyltransferaseOS=NialliacirculansOX=1397GN=pnpPE=3SV=1	tr|A0A553SNV9|A0A553SNV9_NIACIPolyribonucleotidenucleotidyltransferaseOS=NialliacirculansOX=1397GN=pnpPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	575.804931640625	2	575.803154	1149.59175	2.2538	0.0012978	0.78592	0.00045253	3.0398	0.0017503	575.8035603580012	86.222	0.93694	86.222	85.994	86.931	0					49	22	4	0	0	0	0.45822	1	9085	9085		60.118	3.6845	1	1704800			6603	33969	5290	5299	7779	7779					0.022942712036865487
EELTIIKSV	9	Unmodified	_EELTIIKSV_					0	0	0			REV__ENSG00000180185|ENST00000427358|FAHD1	REV__ENSG00000180185|ENST00000427358|FAHD1	MULTI-MSMS	OvCa9_classI_Rep2	2	516.3030395507812	2	516.30279	1030.59103	-1.3641	-0.00070426	1.9153	0.00098889	0.55128	0.00028463	516.3037096883031	61.9	2.366	59.14	58.568	60.934	-2.7593					127	45	4	0	0	0	0.28934	1	4605	4605		64.207	3.2353	1	1077700	+		6604	22162	5291	5300	7780	7780					0.07695476554658853
EELTKITKP	9	Unmodified	_EELTKITKP_					0	0	0			REV__L1PA2_dup1619|chr5:71851116-71854174:+|2.376726425342643|0.0208621851436049|6.83|429.0|81|3|sense;REV__nc|ENSG999|O00370|L1_ORF2;REV__L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|52|1|sense;REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|111|2|sense	REV__nc|ENSG999|O00370|L1_ORF2	MULTI-SECPEP	OvCa9_classI_Rep2	2	530.2936401367188	2	529.808239	1057.60193	-0.56704	-0.00030042	3.2936	0.001745	2.7266	0.0014446	529.8081685034116	72.661	0.833	70.261	69.907	70.74	-2.3999					24	15	2	0	0	0	0.027452	1	5869	5869		49.536	10.73	1	54815	+		6605	29238;28477;28526;28544	5292	5301	7781	7781					0.07542878928961727
EELVQHLGAA	10	Unmodified	_EELVQHLGAA_					0	0	0		ENSG00000182606|ENST00000327628|TRAK1;TRAK1|p.P794Hfs*26|1|0.37|ENSG00000182606|chr3:42223253-42223253|C/-|frameshift_variant;TRAK1|p.R362Lfs*18|1|0.06|ENSG00000182606|chr3:42194912-42194913|-/T|frameshift_variant;TRAK1|p.Y363Dfs*25|1|0.06|ENSG00000182606|chr3:42194913-42194914|-/AGATTACAGCTGTAAGCCATCATTC|frameshift_variant;nc|ENSG00000182606|Q9UPV9-3|TRAK1;nc|ENSG00000182606|Q9UPV9-2|TRAK1	ENSG00000182606|ENST00000327628|TRAK1	ENSG00000182606|ENST00000327628|TRAK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.3338623046875	2	533.780013	1065.54547	-0.095852	-5.1164E-05	0.30267	0.00016156	0.20681	0.00011039	533.7800476936516	69.276	0.73544	69.276	69.063	69.798	0					25	17	2	0	0	0	0.026659	1	6643	6643		45.972	12.457	1	1169000			6606	8013	5293	5302	7782	7782					0.015322510922715082
EELVQHLGAA	10	Unmodified	_EELVQHLGAA_					0	0	0		ENSG00000182606|ENST00000327628|TRAK1;TRAK1|p.P794Hfs*26|1|0.37|ENSG00000182606|chr3:42223253-42223253|C/-|frameshift_variant;TRAK1|p.R362Lfs*18|1|0.06|ENSG00000182606|chr3:42194912-42194913|-/T|frameshift_variant;TRAK1|p.Y363Dfs*25|1|0.06|ENSG00000182606|chr3:42194913-42194914|-/AGATTACAGCTGTAAGCCATCATTC|frameshift_variant;nc|ENSG00000182606|Q9UPV9-3|TRAK1;nc|ENSG00000182606|Q9UPV9-2|TRAK1	ENSG00000182606|ENST00000327628|TRAK1	ENSG00000182606|ENST00000327628|TRAK1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	533.780013	1065.54547	-0.48379	-0.00025824	0.60938	0.00032528	0.12559	6.7039E-05	533.7800849396704	71.509	1.5702	69.002	68.437	70.008	-2.5071	-0.13048	-0.00031142	NaN	45.972	74	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153200			6607	8013	5293	5302							0.015322510922715082
EELYDIDDI	9	Unmodified	_EELYDIDDI_					0	0	0		tr|A0A7D6VYM8|A0A7D6VYM8_9CLOTCation-transportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16575PE=4SV=1	tr|A0A7D6VYM8|A0A7D6VYM8_9CLOTCation-transportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16575PE=4SV=1	tr|A0A7D6VYM8|A0A7D6VYM8_9CLOTCation-transportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16575PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	561.7594604492188	2	562.753327	1123.4921	1.5239	0.00085757	-0.78054	-0.00043925	0.74333	0.00041831	563.2556005604418	64.255	0.63435	60.78	60.49	61.125	-3.475					17	12	2	0	0	0	0.027456	1	4601	4601		38.806	1.647	1	23859			6608	35335	5294	5303	7783	7783					-0.06470591200900344
EEMDSNKVSL	10	Oxidation (M)	_EEM(Oxidation (M))DSNKVSL_		EEM(1)DSNKVSL		EEM(88)DSNKVSL	0	0	1		HEATR1|p.P2064Hfs*2|1|0.04|ENSG00000119285|chr1:236553627-236553627|G/-|frameshift_variant;ENSG00000119285|ENST00000366582|HEATR1;HEATR1|p.G1956Wfs*9|1|0.04|ENSG00000119285|chr1:236555353-236555354|-/A|frameshift_variant	HEATR1|p.P2064Hfs*2|1|0.04|ENSG00000119285|chr1:236553627-236553627|G/-|frameshift_variant	HEATR1|p.P2064Hfs*2|1|0.04|ENSG00000119285|chr1:236553627-236553627|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.2651977539062	2	584.263536	1166.51252	-0.86675	-0.00050641	0.85613	0.00050021	-0.010623	-6.2065E-06	584.2638965795422	58.582	1.346	55.19	54.902	56.248	-3.392					70	26	4	0	0	0	0.24425	1	3875	3875		87.696	13.441	1	271570			6609	3350	5295	5304	7784	7784		106			-0.06407743812746958
EEMDSNKVSL	10	Oxidation (M)	_EEM(Oxidation (M))DSNKVSL_					0	0	1		HEATR1|p.P2064Hfs*2|1|0.04|ENSG00000119285|chr1:236553627-236553627|G/-|frameshift_variant;ENSG00000119285|ENST00000366582|HEATR1;HEATR1|p.G1956Wfs*9|1|0.04|ENSG00000119285|chr1:236555353-236555354|-/A|frameshift_variant	HEATR1|p.P2064Hfs*2|1|0.04|ENSG00000119285|chr1:236553627-236553627|G/-|frameshift_variant	HEATR1|p.P2064Hfs*2|1|0.04|ENSG00000119285|chr1:236553627-236553627|G/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	584.263536	1166.51252	-0.63564	-0.00037138	1.3522	0.00079002	0.71653	0.00041864	584.2640518024258	58.334	0.90216	55.552	55.233	56.135	-2.7821	0.1814	0.00032279	NaN	87.696	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46817			6610	3350	5295	5304				106			-0.06407743812746958
EEMERDFQGVL	11	Unmodified	_EEMERDFQGVL_					0	0	0		ENSG00000120051|ENST00000369704|CFAP58	ENSG00000120051|ENST00000369704|CFAP58	ENSG00000120051|ENST00000369704|CFAP58	MULTI-MSMS	OvCa99_classI_Rep5	1	451.5435791015625	3	451.543215	1351.60782	1.6333	0.00073751	-1.2049	-0.00054407	0.42839	0.00019344	451.5425433349944	81.638	1.3227	81.638	81.329	82.652	0					89	31	5	0	0	0	0.27273	1	8434	8434		70.399	3.4784	1	6252300			6611	3413	5296	5305	7785	7785					-0.0539239062170509
EEMLRELARV	10	Unmodified	_EEMLRELARV_					0	0	0		sp|P16736|HELI_HCMVADNAreplicationhelicaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=HELIPE=3SV=1;sp|F5HEN8|HELI_HCMVMDNAreplicationhelicaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=HELIPE=3SV=1	sp|P16736|HELI_HCMVADNAreplicationhelicaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=HELIPE=3SV=1	sp|P16736|HELI_HCMVADNAreplicationhelicaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=HELIPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	623.3345947265625	2	623.33463	1244.65471	-2.9225	-0.0018217	3.4524	0.002152	0.52998	0.00033035	623.3365800875661	150.92	1.7074	149.49	148.37	150.08	-1.4344					84	37	3	0	0	0	0.79213	1	14884	14884		19.997	0.89325	1	33269			6612	32868	5297	5306	7786	7786					0.04216513720120929
EEMRDEKLVT	10	Unmodified	_EEMRDEKLVT_					0	0	0		MYH13|p.Q1539Hfs*44|1|0.11|ENSG00000006788|chr17:10311142-10311143|-/G|frameshift_variant;ENSG00000006788|ENST00000252172|MYH13;MYH13|p.I840Sfs*5|1|0.23|ENSG00000006788|chr17:10328039-10328039|T/-|frameshift_variant	MYH13|p.Q1539Hfs*44|1|0.11|ENSG00000006788|chr17:10311142-10311143|-/G|frameshift_variant	MYH13|p.Q1539Hfs*44|1|0.11|ENSG00000006788|chr17:10311142-10311143|-/G|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	417.9168701171875	3	417.207944	1248.602	0.62015	0.00025873	3.2462	0.0013543	3.8664	0.0016131	417.544742687107	32.432	0.34775	32.432	32.303	32.651	0					10	6	2	0	0	0	0.027006	1	1412	1412		24.232	2.5461	1	25570			6613	14848	5298	5307	7787	7787					-0.01235489133387091
EEMWSGNPAR	10	Unmodified	_EEMWSGNPAR_					0	0	0		ENST00000416802.1_1_2:27356078-27357162:-|nuORF;ENST00000468045.5_1_2:27356078-27356276:-|nuORF	ENST00000416802.1_1_2:27356078-27357162:-|nuORF	ENST00000416802.1_1_2:27356078-27357162:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.3123168945312	2	588.758755	1175.50296	1.2889	0.00075885	-2.5524	-0.0015027	-1.2635	-0.00074387	588.7550990041224	149.6	0.43355	149.6	149.36	149.79	0					11	8	2	0	0	0	0.027088	1	17518	17518		14.137	5.4434	1	10924			6614	11613	5299	5308	7788	7788					-0.07777467307596453
EENEQQAAQR	10	Unmodified	_EENEQQAAQR_					0	0	0		nc|ENSG00000144218|P51826-2|AFF3;ENSG00000144218|ENST00000672756|AFF3	nc|ENSG00000144218|P51826-2|AFF3	nc|ENSG00000144218|P51826-2|AFF3	MULTI-MSMS	OvCa99_classI_Rep5	1	601.77587890625	2	601.773448	1201.53234	1.6673	0.0010034	0.84033	0.00050569	2.5077	0.0015091	601.7737874797225	147.52	1.7112	147.52	147.21	148.92	0					103	34	4	0	0	0	0.47142	1	17263	17263		58.23	3.4536	1	1683300			6615	5134	5300	5309	7789	7789					-0.060362317577755675
EENERKIEL	9	Unmodified	_EENERKIEL_					0	0	0			REV__nc|ENSG00000106853|Q14914-2|PTGR1	REV__nc|ENSG00000106853|Q14914-2|PTGR1	MULTI-MSMS	OvCa99_classI_Rep5	1	580.302734375	2	580.30131	1158.58807	-1.0562	-0.00061289	0.88145	0.00051151	-0.17471	-0.00010139	580.3018455410187	53.526	1.1727	53.526	52.999	54.172	0					87	27	7	0	0	0	0.070405	1	4258	4258		107.01	4.2342	1	6165400	+		6616	28783	5301	5310	7790	7790					0.0151160142986555
EENERKIEL	9	Unmodified	_EENERKIEL_					0	0	0			REV__nc|ENSG00000106853|Q14914-2|PTGR1	REV__nc|ENSG00000106853|Q14914-2|PTGR1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	580.30131	1158.58807	-0.43929	-0.00025492	1.7012	0.00098719	1.2619	0.00073227	580.3014996069948	56.778	1.0174	53.433	53.12	54.138	-3.3449	-0.046655	0.00093868	NaN	107.01	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193520	+		6617	28783	5301	5310							0.0151160142986555
EENILGKKW	9	Unmodified	_EENILGKKW_					0	0	0		ENSG00000115423|ENST00000389394|DNAH6;nc|ENSG00000115423|Q9C0G6-2|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.327392578125	2	558.806031	1115.59751	-0.5875	-0.0003283	0.62671	0.00035021	0.039208	2.191E-05	558.8063575487838	27.666	0.24932	27.666	27.542	27.791	0					6	4	2	0	0	0	0.027462	1	827	827		25.574	1.0549	1	16359			6618	3097	5302	5311	7791	7791					0.04433414506047484
EENKLNLKK	9	Unmodified	_EENKLNLKK_					0	0	0			REV__tr|A0A7D6ZR44|A0A7D6ZR44_9CLOTBeta-phosphoglucomutaseOS=ClostridiumintestinaleOX=36845GN=pgmBPE=4SV=1	REV__tr|A0A7D6ZR44|A0A7D6ZR44_9CLOTBeta-phosphoglucomutaseOS=ClostridiumintestinaleOX=36845GN=pgmBPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.2626342773438	2	558.324588	1114.63462	-0.43458	-0.00024264	-2.0495	-0.0011443	-2.4841	-0.0013869	558.8245637390207	66.114	0.58136	66.114	65.831	66.412	0					22	14	2	0	0	0	0.027462	1	6140	6140		53.351	17.733	1	479750	+		6619	32152	5303	5312	7792	7792					0.08189086051788763
EENKLNLKK	9	Unmodified	_EENKLNLKK_					0	0	0			REV__tr|A0A7D6ZR44|A0A7D6ZR44_9CLOTBeta-phosphoglucomutaseOS=ClostridiumintestinaleOX=36845GN=pgmBPE=4SV=1	REV__tr|A0A7D6ZR44|A0A7D6ZR44_9CLOTBeta-phosphoglucomutaseOS=ClostridiumintestinaleOX=36845GN=pgmBPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	558.324588	1114.63462	-0.46615	-0.00026026	-8.6164	-0.0048108	-9.0826	-0.005071	558.3194513797421	68.6	0.84303	65.979	65.573	66.416	-2.6203	-0.11167	0.0001729	NaN	49.442	44	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119180	+		6620	32152	5303	5312							0.08189086051788763
EENKLNLKK	9	Unmodified	_EENKLNLKK_					0	0	0			REV__tr|A0A7D6ZR44|A0A7D6ZR44_9CLOTBeta-phosphoglucomutaseOS=ClostridiumintestinaleOX=36845GN=pgmBPE=4SV=1	REV__tr|A0A7D6ZR44|A0A7D6ZR44_9CLOTBeta-phosphoglucomutaseOS=ClostridiumintestinaleOX=36845GN=pgmBPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	558.324588	1114.63462	0.037733	2.1067E-05	-9.7127	-0.0054228	-9.675	-0.0054018	558.3188689180446	69.744	0.82715	66.263	65.811	66.639	-3.4812	0.172	-0.0010513	NaN	49.442	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138790	+		6621	32152	5303	5312							0.08189086051788763
EENVFILEL	9	Unmodified	_EENVFILEL_					0	0	0			REV__nc|ENSG00000164707|Q9UKG4|SLC13A4	REV__nc|ENSG00000164707|Q9UKG4|SLC13A4	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.83251953125	2	553.292422	1104.57029	1.7552	0.00097116	-1.8528	-0.0010251	-0.097565	-5.3982E-05	553.2911506406646	81.872	0.64822	81.872	81.493	82.141	0					33	15	3	0	0	0	0.027447	1	8468	8468		47.657	0	1	741110	+		6622	16090	5304	5313	7793	7793					0.02218886175000989
EEPDPRCTWL	10	Unmodified	_EEPDPRCTWL_					0	0	0			REV__ENST00000367467.7_1_6:148869745-148869889:+|nuORF	REV__ENST00000367467.7_1_6:148869745-148869889:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	623.2804565429688	2	623.282063	1244.54957	-0.18055	-0.00011253	-4.3776	-0.0027285	-4.5581	-0.002841	623.2793429624596	67.466	0.69975	67.466	67.255	67.955	0					34	17	3	0	0	0	0.3094	1	6317	6317		79.713	6.8333	1	2182800	+		6623	24898	5305	5314	7794	7794					-0.06292027476320072
EEPEPALVKR	10	Unmodified	_EEPEPALVKR_					0	0	0			REV__ENSG00000185040|ENST00000633306|SPDYE16	REV__ENSG00000185040|ENST00000633306|SPDYE16	MULTI-SECPEP	OvCa9_classI_Rep3	3	584.7826538085938	2	584.322045	1166.62954	-2.3805	-0.001391	-2.5038	-0.001463	-4.8843	-0.002854	584.3203384874529	86.56	0.65317	84.383	83.979	84.633	-2.1768					17	12	2	0	0	0	0.026635	1	5106	5106		66.429	4.3219	1	33616	+		6624	22474	5306	5315	7795	7795					0.052887821891772546
EEPEPALVKR	10	Unmodified	_EEPEPALVKR_					0	0	0			REV__ENSG00000185040|ENST00000633306|SPDYE16	REV__ENSG00000185040|ENST00000633306|SPDYE16	MULTI-MATCH	OvCa99_classI_Rep5	1		2	584.322045	1166.62954	2.2163	0.001295	-3.6317	-0.0021221	-1.4154	-0.00082702	584.3190580887544	84.396	0.4124	84.396	84.303	84.716	0	0.04465	-0.00091824	NaN	66.429	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	475870	+		6625	22474	5306	5315							0.052887821891772546
EEPQRSPLF	9	Unmodified	_EEPQRSPLF_					0	0	0		ENST00000539267.5_1_1:205554025-205568301:+|nuORF;ENST00000475956.5_1_1:205554022-205568281:+|nuORF	ENST00000539267.5_1_1:205554025-205568301:+|nuORF	ENST00000539267.5_1_1:205554025-205568301:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.2586669921875	2	551.780013	1101.54547	1.8629	0.0010279	2.6837	0.0014808	4.5467	0.0025088	552.2830354279564	136.61	0.28748	136.61	136.49	136.77	0					9	5	2	0	0	0	0.027418	1	15945	15945		58.782	5.4305	1	60854			6626	12458	5307	5316	7796	7796					-0.0012374890770843194
EEPRARFSN	9	Unmodified	_EEPRARFSN_					0	0	0		ENST00000370033.8_1_10:103799782-103815930:-|nuORF	ENST00000370033.8_1_10:103799782-103815930:-|nuORF	ENST00000370033.8_1_10:103799782-103815930:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.809326171875	2	553.272887	1104.53122	0.63757	0.00035275	-3.4761	-0.0019232	-2.8385	-0.0015705	553.2707969562678	97.778	0.80526	95.399	95.216	96.022	-2.3786					19	15	2	0	0	0	0.027462	1	8733	8733		39.253	15.05	1	33477			6627	10915	5308	5317	7797	7797					-0.016864013359963792
EEPRARFSN	9	Unmodified	_EEPRARFSN_					0	0	0		ENST00000370033.8_1_10:103799782-103815930:-|nuORF	ENST00000370033.8_1_10:103799782-103815930:-|nuORF	ENST00000370033.8_1_10:103799782-103815930:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	553.272887	1104.53122	0.95323	0.0005274	-3.485	-0.0019282	-2.5318	-0.0014008	553.2710879271847	96.348	0.73898	95.32	95.113	95.852	-1.0281	-0.071053	-0.0009599	NaN	36.447	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28173			6628	10915	5308	5317							-0.016864013359963792
EEPRARFSN	9	Unmodified	_EEPRARFSN_					0	0	0		ENST00000370033.8_1_10:103799782-103815930:-|nuORF	ENST00000370033.8_1_10:103799782-103815930:-|nuORF	ENST00000370033.8_1_10:103799782-103815930:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	553.272887	1104.53122	-1.0928	-0.00060464	-1.4614	-0.00080854	-2.5542	-0.0014132	553.2719907692579	97.214	0.65617	95.455	95.209	95.865	-1.7595	0.063391	0.0012793	NaN	36.447	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32835			6629	10915	5308	5317							-0.016864013359963792
EEPRPKAQL	9	Unmodified	_EEPRPKAQL_					0	0	0			REV__nc|ENSG00000012817|Q9BY66-2|KDM5D	REV__nc|ENSG00000012817|Q9BY66-2|KDM5D	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.2579956054688	2	534.29583	1066.57711	-0.446	-0.0002383	-0.15244	-8.145E-05	-0.59844	-0.00031975	534.295369694412	61.776	1.005	61.776	61.289	62.294	0					57	23	4	0	0	0	0.027411	1	5406	5406		64.207	24.954	1	1314000	+		6630	16499	5309	5318	7798	7798					0.04648243846236255
EEPRVPERR	9	Unmodified	_EEPRVPERR_					0	0	0			REV__ENST00000431044.5_1_22:19711983-19712286:+|nuORF	REV__ENST00000431044.5_1_22:19711983-19712286:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	584.7826538085938	2	584.315086	1166.61562	-2.3869	-0.0013947	-4.4457	-0.0025977	-6.8325	-0.0039924	584.8148517303065	86.08	0.50103	83.86	83.636	84.137	-2.2204					15	9	2	0	0	0	0.027425	1	5106	5106		60.118	0	1	45163	+		6631	25718	5310	5319	7799	7799					0.03897549480757334
EEPSTWSGYM	10	Unmodified	_EEPSTWSGYM_					0	0	0		nc|ENSG00000070540|Q5MNZ9-2|WIPI1;ENSG00000070540|ENST00000262139|WIPI1	nc|ENSG00000070540|Q5MNZ9-2|WIPI1	nc|ENSG00000070540|Q5MNZ9-2|WIPI1	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.3169555664062	2	593.739696	1185.46484	1.1262	0.00066865	2.5161	0.0014939	3.6423	0.0021625	593.7407961288902	150.76	0.30142	150.76	150.59	150.89	0					8	5	2	0	0	0	0.026956	1	17663	17663		34.173	17.699	1	23069			6632	1429	5311	5320	7800	7800					-0.12047398012919075
EEPTYYKL	8	Unmodified	_EEPTYYKL_					0	0	0			REV__tr|A0A7D6VS94|A0A7D6VS94_9CLOTPeptidasedomain-containingABCtransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_22100PE=4SV=1	REV__tr|A0A7D6VS94|A0A7D6VS94_9CLOTPeptidasedomain-containingABCtransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_22100PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.30810546875	2	521.758215	1041.50188	-0.8315	-0.00043384	-2.1424	-0.0011178	-2.9739	-0.0015516	521.7569845133257	53.161	0.83929	50.348	49.788	50.628	-2.8139					23	16	3	0	0	0	0.028476	1	3604	3604		76.847	2.5916	1	18880	+		6633	31480	5312	5321	7801	7801					-0.017213584048704433
EEPVLNLEI	9	Unmodified	_EEPVLNLEI_					0	0	0			REV__ENSG00000237765|ENST00000422728|FAM200B	REV__ENSG00000237765|ENST00000422728|FAM200B	MULTI-MSMS	OvCa9_classI_Rep2	2	528.2837524414062	2	528.284597	1054.55464	-1.7589	-0.00092921	1.7414	0.00091994	-0.017547	-9.2698E-06	528.2853995863809	141.02	1.0894	140.79	140.48	141.57	-0.22697					51	21	4	0	0	0	0.37135	1	14110	14110		54.776	3.5836	1	215050	+		6634	23424	5313	5322	7802	7802					0.029545996579372513
EEPVLNLEI	9	Unmodified	_EEPVLNLEI_					0	0	0			REV__ENSG00000237765|ENST00000422728|FAM200B	REV__ENSG00000237765|ENST00000422728|FAM200B	MULTI-MSMS	OvCa9_classI_Rep3	3	528.2841186523438	2	528.284597	1054.55464	-2.691	-0.0014216	2.5626	0.0013538	-0.12841	-6.7835E-05	528.2858404974387	141.55	1.2874	140.54	140.14	141.43	-1.0106					66	25	4	0	0	0	0.1944	3	11690	11690;11718;11732		77.318	8.4714	1	289450	+		6635	23424	5313	5322	7803;7804;7805	7803					0.029545996579372513
EEQDIYKEKI	10	Unmodified	_EEQDIYKEKI_					0	0	0			REV__ENSG00000096384|ENST00000371646|HSP90AB1;REV__ENST00000554401.1_1_14:102549349-102551760:-|nuORF	REV__ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OvCa9_classI_Rep2	2	432.2220153808594	3	432.222359	1293.64525	-1.8932	-0.0008183	1.9037	0.0008228	0.010411	4.5E-06	432.22317716770107	63.149	1.9449	60.405	59.899	61.844	-2.7444					99	36	4	0	0	0	0.29438	1	4770	4770		81.525	16.368	1	676300	+		6636	17305;17059	5314	5323	7806	7806					0.010170239155741001
EEQGKFQEK	9	Unmodified	_EEQGKFQEK_					0	0	0			REV__ENSG00000196503|ENST00000640821|ARL9	REV__ENSG00000196503|ENST00000640821|ARL9	MULTI-MSMS	OvCa99_classI_Rep5	1	561.7761840820312	2	561.774928	1121.5353	0.48057	0.00026997	-1.6116	-0.00090537	-1.1311	-0.0006354	561.7752414426745	68.785	0.78939	68.785	68.356	69.145	0					48	18	4	0	0	0	0.34132	1	6517	6517		58.23	1.5089	1	1486400	+		6637	22838	5315	5324	7807	7807					-0.02060356632955518
EEQGKFQEK	9	Unmodified	_EEQGKFQEK_					0	0	0			REV__ENSG00000196503|ENST00000640821|ARL9	REV__ENSG00000196503|ENST00000640821|ARL9	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	561.774928	1121.5353	0.48057	0.00026997	-1.6116	-0.00090537	-1.1311	-0.0006354	561.7752414426745	68.785	0.78939	68.785	68.356	69.145	0	0	0	NaN	58.23	48	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1486400	+		6638	22838	5315	5324							-0.02060356632955518
EEQILQVLK	9	Unmodified	_EEQILQVLK_					0	0	0			REV__ENSG00000186648|ENST00000342740|CARMIL3	REV__ENSG00000186648|ENST00000342740|CARMIL3	MULTI-MSMS	OvCa99_classI_Rep5	1	550.3215942382812	2	550.321514	1098.62847	-1.0549	-0.00058053	1.1783	0.00064846	0.12344	6.7932E-05	550.3220332795314	36.494	0.76567	36.494	36.257	37.023	0					35	16	4	0	0	0	0.16562	1	1922	1922		82.241	7.9855	1	574780	+		6639	22606	5316	5325	7808	7808					0.08310567820262804
EEQIRKVPK	9	Unmodified	_EEQIRKVPK_					0	0	0			REV__ENSG00000096433|ENST00000605930|ITPR3	REV__ENSG00000096433|ENST00000605930|ITPR3	MULTI-MSMS	OvCa9_classI_Rep2	2	563.8328247070312	2	563.83258	1125.65061	-1.9116	-0.0010778	1.8815	0.0010608	-0.030066	-1.6952E-05	563.8333911009685	37.438	0.88556	34.728	34.534	35.419	-2.7097					37	17	4	0	0	0	0.2422	1	1681	1681		69.628	2.134	1	116140	+		6640	17307	5317	5326	7809	7809					0.09280792288700468
EEQKAQEI	8	Unmodified	_EEQKAQEI_					0	0	0		nc|ENSG00000080644|P32297-3|CHRNA3	nc|ENSG00000080644|P32297-3|CHRNA3	nc|ENSG00000080644|P32297-3|CHRNA3	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.26953125	2	487.743096	973.47164	-0.10839	-5.2868E-05	-1.3358	-0.00065154	-1.4442	-0.00070441	487.74294688480904	72.964	0.3901	72.964	72.684	73.074	0					13	9	2	0	0	0	0.028476	1	7121	7121		79.451	0	1	232680			6641	14900	5318	5327	7810	7810					-0.016157170700353163
EEQKGGQE	8	Unmodified	_EEQKGGQE_					0	0	0			REV__tr|A0A7D6ZSE6|A0A7D6ZSE6_9CLOTMethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metHPE=3SV=1	REV__tr|A0A7D6ZSE6|A0A7D6ZSE6_9CLOTMethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metHPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	452.7045593261719	2	452.703971	903.393389	-0.65432	-0.00029621	0.56977	0.00025794	-0.084543	-3.8273E-05	452.7043772819255	27.216	1.1473	27.216	27.043	28.19	0					60	22	5	0	0	0	0.40148	1	778	778		87.754	5.5138	1	4240800	+		6642	32182	5319	5328	7811	7811					-0.06217149655265075
EEQKKLEELK	10	Unmodified	_EEQKKLEELK_					0	0	0		ENSG00000232112|ENST00000438607|TMA7	ENSG00000232112|ENST00000438607|TMA7	ENSG00000232112|ENST00000438607|TMA7	MULTI-SECPEP	OvCa9_classI_Rep3	3	424.5948181152344	3	425.23812	1272.69253	1.2837	0.00054587	3.114	0.0013242	4.3977	0.0018701	425.2396745932964	69.033	0.64877	66.218	65.863	66.512	-2.8144					20	12	3	0	0	0	0.027056	1	3043	3043		47.96	0	1	26192			6643	9291	5320	5329	7812	7812					0.06709303186562465
EEQLEQAQAK	10	Unmodified	_EEQLEQAQAK_					0	0	0			REV__ENSG00000120645|ENST00000538872|IQSEC3	REV__ENSG00000120645|ENST00000538872|IQSEC3	MULTI-SECPEP	OvCa9_classI_Rep3	3	587.81494140625	2	587.290942	1172.56733	-1.7175	-0.0010086	0.30261	0.00017772	-1.4149	-0.00083093	587.2910386948998	99.106	1.1335	97.421	96.904	98.038	-1.685					48	21	3	0	0	0	0.026968	1	6678	6678		29.17	0	1	199820	+		6644	18505	5321	5330	7813	7813					-0.012049889498257471
EEQLPKLLPGI	11	Unmodified	_EEQLPKLLPGI_					0	0	0		ENSG00000179832|ENST00000326134|MROH1;nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF;nc|ENSG00000179832|Q8NDA8-7|MROH1;MROH1|p.R711Gfs*26|1|0.22|ENSG00000179832|chr8:144241470-144241470|A/-|frameshift_variant;MROH1|p.A749Rfs*134|1|0.34|ENSG00000179832|chr8:144242423-144242424|-/GGCACGT|frameshift_variant;nc|ENSG00000179832|Q8NDA8-6|MROH1;nc|ENSG00000179832|Q8NDA8-5|MROH1;nc|ENSG00000179832|Q8NDA8-4|MROH1	ENSG00000179832|ENST00000326134|MROH1	ENSG00000179832|ENST00000326134|MROH1	MULTI-MSMS	OvCa9_classI_Rep2	2	412.9099426269531	3	412.911456	1235.71254	1.4214	0.00058692	-3.4205	-0.0014124	-1.9991	-0.00082546	412.90997305484035	43.139	2.0837	40.43	40.016	42.099	-2.7097					93	41	4	0	0	0	0.69424	1	2359	2359		31.634	1.0654	1	208390			6645	7843	5322	5331	7814	7814					0.10411098917165873
EEQPGRSKIW	10	Unmodified	_EEQPGRSKIW_					0	0	0			REV__ENST00000524482.5_1_11:64893377-64893431:+|nuORF	REV__ENST00000524482.5_1_11:64893377-64893431:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	616.2813720703125	2	615.317294	1228.62004	0.53627	0.00032998	4.138	0.0025462	4.6743	0.0028762	615.3198819372291	105.5	1.0503	105.5	105.27	106.32	0					57	23	4	0	0	0	0.026931	1	11854	11854		30.318	5.7985	1	1558400	+		6646	27099	5323	5332	7815	7815					0.014870139036702312
EEQPQPPLAM	10	Unmodified	_EEQPQPPLAM_					0	0	0		ENSG00000167987|ENST00000301765|VPS37C	ENSG00000167987|ENST00000301765|VPS37C	ENSG00000167987|ENST00000301765|VPS37C	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2958374023438	2	570.273706	1138.53286	1.7499	0.00099793	-2.8839	-0.0016446	-1.134	-0.0006467	570.2720574142276	77.875	0.58434	77.875	77.629	78.214	0					33	13	4	0	0	0	0.026573	1	7880	7880		45.022	16.941	1	1007300			6647	6860	5324	5333	7816	7816					-0.030865283622688366
EEQPYFRE	8	Unmodified	_EEQPYFRE_					0	0	0		ZNF652|p.E159Rfs*23|1|0.03|ENSG00000198740|chr17:49317251-49317251|C/-|frameshift_variant;ENSG00000198740|ENST00000430262|ZNF652	ZNF652|p.E159Rfs*23|1|0.03|ENSG00000198740|chr17:49317251-49317251|C/-|frameshift_variant	ZNF652|p.E159Rfs*23|1|0.03|ENSG00000198740|chr17:49317251-49317251|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.8553466796875	2	549.248546	1096.48254	0.32124	0.00017644	3.865	0.0021228	4.1862	0.0022993	549.2497042248077	63.258	0.59124	63.258	63.016	63.607	0					25	14	2	0	0	0	0.028476	1	5651	5651		37.159	10.466	1	210950			6648	8862	5325	5334	7817	7817					-0.06184314695747162
EERAMRQF	8	Unmodified	_EERAMRQF_					0	0	0		nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF	nc|ENSG00000114019|Q9Y2J4-3|AMOTL2	nc|ENSG00000114019|Q9Y2J4-3|AMOTL2	MULTI-MSMS	OvCa99_classI_Rep5	1	533.7582397460938	2	533.758558	1065.50256	-0.65982	-0.00035218	0.55838	0.00029804	-0.10144	-5.4142E-05	533.7587609045129	42.261	1.2455	42.261	42.024	43.27	0					61	28	4	0	0	0	0.57878	2	2695	2695;2720		68.485	22.533	1	4002500			6649	3006	5326	5335	7818;7819	7818					-0.027568422367949097
EEREEEYQRAR	11	Unmodified	_EEREEEYQRAR_					0	0	0		nc|ENSG00000048991|Q15032-2|R3HDM1;nc|ENSG00000048991|Q15032-4|R3HDM1;nc|ENSG00000048991|Q15032|R3HDM1;nc|ENSG00000048991|Q15032-3|R3HDM1;ENSG00000048991|ENST00000683871|R3HDM1	nc|ENSG00000048991|Q15032-2|R3HDM1	nc|ENSG00000048991|Q15032-2|R3HDM1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.7723693847656	3	498.902571	1493.68588	-1.013	-0.00050538	0.03601	1.7965E-05	-0.97698	-0.00048742	498.9026352686641	70.981	1.4041	67.524	67.251	68.656	-3.4563					91	28	4	0	0	0	0.026145	1	5475	5475		2.8518	0	1	841790			6650	1162	5327	5336	7820	7820					-0.04121241712118717
EERISELKI	9	Unmodified	_EERISELKI_					0	0	0		ENST00000530181.5_2_11:7627018-7627087:+|nuORF	ENST00000530181.5_2_11:7627018-7627087:+|nuORF	ENST00000530181.5_2_11:7627018-7627087:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	558.818115234375	2	558.816596	1115.61864	2.3417	0.0013086	-0.2232	-0.00012473	2.1185	0.0011838	558.8163623273247	77.617	0.46471	77.617	77.336	77.801	0					19	10	3	0	0	0	0.18887	1	7844	7844		78.264	3.2205	1	817400			6651	13284	5328	5337	7821	7821					0.06545379814906482
EERKRKSV	8	Unmodified	_EERKRKSV_					0	0	0		ENSG00000115421|ENST00000238714|PAPOLG;ENST00000453839.5_1_2:61014200-61024278:+|nuORF	ENSG00000115421|ENST00000238714|PAPOLG	ENSG00000115421|ENST00000238714|PAPOLG	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.3045654296875	2	516.301447	1030.58834	-0.62044	-0.00032034	3.6134	0.0018656	2.993	0.0015453	516.303207209785	62.857	2.0837	59.399	58.962	61.046	-3.4577					108	42	4	0	0	0	0.48084	1	4375	4375		79.451	8.1553	1	1463100			6652	3096	5329	5338	7822	7822					0.07427065940373723
EERKRREEKRR	11	Unmodified	_EERKRREEKRR_					0	0	0		ENSG00000146830|ENST00000678049|GIGYF1;chr7:100689555-100693937|423|15.18|0.0|20.53|-|ENST00000646601|GIGYF1,GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7665405273438	3	524.632749	1570.87642	-0.75285	-0.00039497	-3.7031	-0.0019428	-4.4559	-0.0023377	524.6306966459737	29.445	0.19884	29.445	29.337	29.536	0					5	3	2	0	0	0	0.026482	1	1046	1046		8.0344	2.0333	1	25217			6653	522	5330	5339	7823	7823					0.11381509460602501
EERKVSKF	8	Unmodified	_EERKVSKF_					0	0	0		ENSG00000167208|ENST00000330943|SNX20;nc|ENSG00000167208|Q7Z614-4|SNX20;nc|ENSG00000167208|Q7Z614-3|SNX20;nc|ENSG00000167208|Q7Z614-2|SNX20	ENSG00000167208|ENST00000330943|SNX20	ENSG00000167208|ENST00000330943|SNX20	MULTI-MSMS	OvCa9_classI_Rep2	2	511.78643798828125	2	511.785099	1021.55564	-0.34876	-0.00017849	4.273	0.0021869	3.9243	0.0020084	511.7870588089586	114.99	2.1752	114.87	114.5	116.68	-0.11777					99	43	4	0	0	0	0.67872	1	10937	10937		47.657	6.8792	1	358000			6654	6772	5331	5340	7824	7824					0.04572858817527958
EERPPAQAL	9	Unmodified	_EERPPAQAL_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-5|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.7680969238281	2	505.766906	1009.51926	-0.5282	-0.00026715	0.031294	1.5827E-05	-0.49691	-0.00025132	505.7668696282041	58.666	1.545	55.274	54.802	56.347	-3.392					92	30	5	0	0	0	0.068524	3	3883	3872;3883;3895		108.09	25.782	1	1469000			6655	1151	5332	5341	7825;7826;7827	7826					0.014879819208090339
EERPYQASL	9	Unmodified	_EERPYQASL_					0	0	0			REV__nc|ENSG00000154760|Q68D06-2|SLFN13	REV__nc|ENSG00000154760|Q68D06-2|SLFN13	MULTI-MSMS	OvCa99_classI_Rep5	1	546.7706909179688	2	546.769645	1091.52474	0.28211	0.00015425	0.068116	3.7244E-05	0.35023	0.00019149	546.7699534817368	72.202	1.8116	72.202	71.589	73.4	0					77	44	4	0	0	0	0.56889	1	7016	7016		35.618	1.4457	1	1510300	+		6656	20396	5333	5342	7828	7828					-0.017363392873676275
EERREPSPR	9	Unmodified	_EERREPSPR_					0	0	0			REV__ENSG00000078699|ENST00000342704|CBFA2T2	REV__ENSG00000078699|ENST00000342704|CBFA2T2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	577.30712890625	2	578.296893	1154.57923	-0.47014	-0.00027188	0.82604	0.0004777	0.3559	0.00020582	578.2973470699774	38.949	0.79446	36.022	35.75	36.544	-2.9264					23	15	2	0	0	0	0.027461	1	1617	1617		40.778	1.5253	1	68298	+		6657	17029	5334	5343	7829	7829					0.008126725840384097
EERRKQEELLR	11	Unmodified	_EERRKQEELLR_					0	0	0		nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2	nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.7533874511719	3	495.942589	1484.80594	-0.31368	-0.00015557	-3.4857	-0.0017287	-3.7994	-0.0018843	495.9408576426933	56.464	0.28148	56.464	56.3	56.581	0					10	6	2	0	0	0	0.026283	1	4687	4687		19.627	0	1	210700			6658	8948	5335	5344	7830	7830					0.08292791352323547
EERTRFGW	8	Unmodified	_EERTRFGW_					0	0	0			REV__tr|A0A7D6VT82|A0A7D6VT82_9CLOTHADfamilyhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07030PE=4SV=1	REV__tr|A0A7D6VT82|A0A7D6VT82_9CLOTHADfamilyhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07030PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.822021484375	2	540.764697	1079.51484	-0.42691	-0.00023086	1.6829	0.00091006	1.256	0.0006792	540.7663234701164	33.514	0.72893	33.514	33.384	34.113	0					19	14	2	0	0	0	0.028476	1	1595	1595		38.806	19.703	1	31778	+		6659	31579	5336	5345	7831	7831					-0.021734825020985227
EERVIIKGR	9	Unmodified	_EERVIIKGR_					0	0	0		nc|ENSG00000163576|Q8N7U6-3|EFHB;ENSG00000163576|ENST00000295824|EFHB	nc|ENSG00000163576|Q8N7U6-3|EFHB	nc|ENSG00000163576|Q8N7U6-3|EFHB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.7928466796875	2	550.332747	1098.65094	1.187	0.00065327	4.2833	0.0023572	5.4703	0.0030105	550.3351192267045	67.64	1.3741	64.15	63.888	65.262	-3.4902					66	27	3	0	0	0	0.027462	1	4972	4972		56.721	15.294	1	453940			6660	6330	5337	5346	7832	7832					0.10556212008555121
EERVKKLVVS	10	Unmodified	_EERVKKLVVS_					0	0	0			REV__ENSG00000183486|ENST00000330714|MX2	REV__ENSG00000183486|ENST00000330714|MX2	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.3169555664062	2	593.861338	1185.70812	1.0594	0.00062911	1.4483	0.00086011	2.5077	0.0014892	593.8625615650187	150.98	0.7092	150.98	150.74	151.45	0					22	13	3	0	0	0	0.027056	1	17663	17663		9.7057	0	1	23189	+		6661	22364	5338	5347	7833	7833					0.122696344942824
EESAADDKNL	10	Unmodified	_EESAADDKNL_					0	0	0			REV__tr|A0A553SPA0|A0A553SPA0_NIACIUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=NialliacirculansOX=1397GN=murEPE=3SV=1	REV__tr|A0A553SPA0|A0A553SPA0_NIACIUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=NialliacirculansOX=1397GN=murEPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	546.6293334960938	2	546.2462	1090.47785	0.97808	0.00053427	-3.5008	-0.0019123	-2.5227	-0.001378	546.2441416052504	87.321	1.4879	85.89	85.386	86.874	-1.4311					68	29	3	0	0	0	0.026602	1	7603	7603		65.465	1.9315	1	112010	+		6662	30518	5339	5348	7834	7834					-0.06377243629208351
EESDELKVM	9	Unmodified	_EESDELKVM_					0	0	0			REV__ENSG00000099326|ENST00000215057|MZF1	REV__ENSG00000099326|ENST00000215057|MZF1	MULTI-MSMS	OvCa99_classI_Rep5	1	540.250732421875	2	540.249897	1078.48524	-0.45739	-0.0002471	0.32337	0.0001747	-0.13402	-7.2402E-05	540.2498746259802	55.206	0.66439	55.206	54.935	55.599	0					33	15	4	0	0	0	0.40667	1	4495	4495		51.335	0	1	1805600	+		6663	17321	5340	5349	7835	7835					-0.0508622735312656
EESEQIKTL	9	Unmodified	_EESEQIKTL_					0	0	0		ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729	ENSG00000135480|ENST00000331817|KRT7	ENSG00000135480|ENST00000331817|KRT7	MSMS	OvCa9_classI_Rep4_	4	538.7781982421875	2	538.777136	1075.53972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.83	1	60.355	59.855	60.855	-3.475								0	0	0	1.4754E-08	1	4510	4510		180.93	27.89	1			+	6664	646	5341	5350	7836	7836					0.004971077899654119
EESLSFGVLG	10	Unmodified	_EESLSFGVLG_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.620849609375	2	519.261122	1036.50769	-1.0107	-0.00052481	-1.3791	-0.00071613	-2.3898	-0.0012409	519.2604023134674	92.577	0.46374	90.615	90.468	90.932	-1.9617					16	9	2	0	0	0	0.026752	1	5868	5868		53.351	14.099	1	53687			6665	1831	5342	5351	7837	7837					-0.00910259893203147
EESLSFGVLG	10	Unmodified	_EESLSFGVLG_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	519.261122	1036.50769	-1.1068	-0.00057473	-0.66306	-0.0003443	-1.7699	-0.00091903	519.260741399263	93.127	0.69655	90.62	90.362	91.059	-2.5072	0.0021629	0.00040423	NaN	53.351	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49925			6666	1831	5342	5351							-0.00910259893203147
EESNTKIDL	9	Unmodified	_EESNTKIDL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000460826.1_1_2:242186148-242187441:-|nuORF;ENST00000488923.1_1_2:242186148-242186740:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OvCa99_classI_Rep5	1	524.7626953125	2	524.761486	1047.50842	-1.6136	-0.00084673	0.3997	0.00020975	-1.2139	-0.00063698	524.7617124656423	64.094	1.3856	64.094	63.57	64.955	0					117	33	6	0	0	0	0.022645	4	5788	5785;5788;5818;5849		143.89	42.938	1	55876000			6667	3119	5343	5352	7838;7839;7840;7841	7839					-0.013434652441446815
EESSTKSL	8	Unmodified	_EESSTKSL_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	440.7491455078125	2	440.716547	879.418542	-1.2198	-0.00053758	2.54	0.0011194	1.3202	0.00058185	440.71758867147315	44.653	0.9715	41.615	41.258	42.23	-3.0385					25	18	2	0	0	0	0.028476	1	2188	2188		17.365	0	1	33626			6668	1094	5344	5353	7842	7842					-0.025990948527010005
EESTAILPE	9	Unmodified	_EESTAILPE_					0	0	0			REV__ENST00000489226.5_1_9:130485405-130489873:+|nuORF	REV__ENST00000489226.5_1_9:130485405-130489873:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.7970275878906	2	494.745305	987.476056	-0.58274	-0.00028831	2.2737	0.0011249	1.691	0.00083661	494.7459259154613	49.186	0.34364	49.186	48.986	49.33	0					10	7	2	0	0	0	0.027462	1	3672	3672		35.618	5.1146	1	140100	+		6669	21250	5345	5354	7843	7843					-0.01818252647137797
EESTATQRLL	10	Unmodified	_EESTATQRLL_					0	0	0		ENSG00000140534|ENST00000268138|TICRR;nc|ENSG00000140534|Q7Z2Z1-2|TICRR	ENSG00000140534|ENST00000268138|TICRR	ENSG00000140534|ENST00000268138|TICRR	MULTI-MSMS	OvCa9_classI_Rep2	2	574.3009033203125	2	574.30131	1146.58807	-0.32228	-0.00018508	-0.41994	-0.00024117	-0.74222	-0.00042626	574.3012965384783	30.687	0.83693	27.977	27.804	28.641	-2.7097					34	16	3	0	0	0	0.72319	1	867	867		27.882	5.9224	1	116960			6670	4857	5346	5355	7844	7844					0.020636014298588634
EETDVVRVMY	10	Unmodified	_EETDVVRVMY_					0	0	0		ENST00000396582.6_1_14:32546309-32615505:+|nuORF	ENST00000396582.6_1_14:32546309-32615505:+|nuORF	ENST00000396582.6_1_14:32546309-32615505:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	620.80029296875	2	620.797546	1239.58054	-0.33995	-0.00021104	-0.88502	-0.00054942	-1.225	-0.00076046	620.7967198473618	22.16	0.18714	22.16	22.08	22.267	0					6	4	2	0	0	0	0.82648	1	186	186		15.642	0.77694	1	16379			6671	11321	5347	5356	7845	7845					-0.029668741620525907
EETETFPSK	9	Unmodified	_EETETFPSK_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-12|SYTL2;nc|ENSG00000137501|Q9HCH5-11|SYTL2;nc|ENSG00000137501|Q9HCH5-7|SYTL2;nc|ENSG00000137501|Q9HCH5-8|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.8478393554688	2	534.248212	1066.48187	-1.1022	-0.00058883	-3.7865	-0.0020229	-4.8886	-0.0026118	534.7477935458442	47.188	0.8161	44.116	43.604	44.42	-3.0724					21	15	2	0	0	0	0.027433	1	2501	2501		51.335	23.453	1	33488			6672	4592	5348	5357	7846	7846					-0.04871154135480538
EETEVKGTL	9	Unmodified	_EETEVKGTL_					0	0	0		nc|ENSG00000163346|Q96AQ6-3|PBXIP1;nc|ENSG00000163346|Q96AQ6-2|PBXIP1;ENSG00000163346|ENST00000368463|PBXIP1	nc|ENSG00000163346|Q96AQ6-3|PBXIP1	nc|ENSG00000163346|Q96AQ6-3|PBXIP1	MULTI-MSMS	OvCa99_classI_Rep5	1	503.25958251953125	2	503.258579	1004.50261	0.12806	6.4445E-05	-0.42564	-0.00021421	-0.29758	-0.00014976	503.25816090684356	52.756	1.0406	52.756	52.478	53.519	0					53	23	5	0	0	0	0.075543	1	4145	4145		104.06	24.344	1	3932900			6673	6289	5349	5358	7847	7847					0.0005343624420675042
EETEVKGTL	9	Unmodified	_EETEVKGTL_					0	0	0		nc|ENSG00000163346|Q96AQ6-3|PBXIP1;nc|ENSG00000163346|Q96AQ6-2|PBXIP1;ENSG00000163346|ENST00000368463|PBXIP1	nc|ENSG00000163346|Q96AQ6-3|PBXIP1	nc|ENSG00000163346|Q96AQ6-3|PBXIP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	503.258579	1004.50261	-1.4334	-0.0007214	-6.0689	-0.0030542	-7.5024	-0.0037756	503.2558781228235	55.811	1.0905	53.008	52.482	53.572	-2.804	0.070583	-0.0025411	NaN	104.06	32	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26812			6674	6289	5349	5358							0.0005343624420675042
EETEVKGTL	9	Unmodified	_EETEVKGTL_					0	0	0		nc|ENSG00000163346|Q96AQ6-3|PBXIP1;nc|ENSG00000163346|Q96AQ6-2|PBXIP1;ENSG00000163346|ENST00000368463|PBXIP1	nc|ENSG00000163346|Q96AQ6-3|PBXIP1	nc|ENSG00000163346|Q96AQ6-3|PBXIP1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	503.258579	1004.50261	-0.57108	-0.0002874	-6.2211	-0.0031308	-6.7921	-0.0034182	503.2558762471634	56.342	1.4688	53.048	52.516	53.984	-3.2944	0.11057	-0.0026942	NaN	104.06	69	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106600			6675	6289	5349	5358							0.0005343624420675042
EETKELLRISL	11	Unmodified	_EETKELLRISL_					0	0	0		tr|A0A7D6VQ99|A0A7D6VQ99_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_20145PE=4SV=1;tr|A0A7D6VT65|A0A7D6VT65_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_19355PE=4SV=1	tr|A0A7D6VQ99|A0A7D6VQ99_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_20145PE=4SV=1	tr|A0A7D6VQ99|A0A7D6VQ99_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_20145PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	444.2583923339844	3	444.257403	1329.75038	1.0899	0.00048419	-1.3045	-0.00057952	-0.21458	-9.5328E-05	444.2567845776039	56.956	1.1408	54.164	53.881	55.022	-2.792					57	22	3	0	0	0	0.53283	1	4057	4057		50.791	9.7112	1	188070			6676	34832	5350	5359	7848	7848					0.09869565111989687
EETMEKQIC	9	Unmodified	_EETMEKQIC_					0	0	0		ENST00000358731.8_2_5:70754606-70757675:+|nuORF	ENST00000358731.8_2_5:70754606-70757675:+|nuORF	ENST00000358731.8_2_5:70754606-70757675:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.3045043945312	2	555.743924	1109.4733	-0.13298	-7.3903E-05	4.0128	0.0022301	3.8799	0.0021562	555.7458445162504	73.184	0.44608	73.184	72.954	73.4	0					16	10	3	0	0	0	0.027462	1	7184	7184		40.778	0	1	231730			6677	10741	5351	5360	7849	7849					-0.07706167367950911
EETPPWFDGP	10	Unmodified	_EETPPWFDGP_					0	0	0			REV__ENST00000571806.1_1_17:2238120-2238594:-|nuORF	REV__ENST00000571806.1_1_17:2238120-2238594:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	588.2977905273438	2	587.756204	1173.49785	-0.25261	-0.00014847	-3.0422	-0.0017881	-3.2948	-0.0019365	587.7543850390998	86.611	0.47734	85.157	84.885	85.362	-1.4549					13	8	2	0	0	0	0.026871	1	7524	7524		29.15	0	1	16201	+		6678	27746	5352	5361	7850	7850					-0.08195447898560815
EETPVVLQL	9	Unmodified	_EETPVVLQL_					0	0	0		ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.2864990234375	2	514.28714	1026.55973	2.0817	0.0010706	-2.2249	-0.0011442	-0.14318	-7.3636E-05	514.285848241367	130.08	1.0822	128.61	128.31	129.4	-1.4779					46	21	3	0	0	0	0.33652	1	12468	12468		58.782	4.0056	1	91366			6679	7982	5353	5362	7851	7851					0.04750903520562133
EETPVVLQL	9	Unmodified	_EETPVVLQL_					0	0	0		ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.28714	1026.55973	1.2075	0.000621	-1.416	-0.00072825	-0.20854	-0.00010725	514.2862892655963	128.99	0.98938	128.76	128.48	129.46	-0.22697	0.089795	-6.1048E-05	NaN	58.782	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52420			6680	7982	5353	5362							0.04750903520562133
EETQKAVLQ	9	Unmodified	_EETQKAVLQ_					0	0	0		ENSG00000197930|ENST00000395686|ERO1A	ENSG00000197930|ENST00000395686|ERO1A	ENSG00000197930|ENST00000395686|ERO1A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.7987670898438	2	523.279846	1044.54514	-0.16901	-8.8438E-05	-1.0579	-0.00055356	-1.2269	-0.000642	523.2793452188963	59.718	1.4813	56.326	55.553	57.035	-3.392					50	29	3	0	0	0	0.027462	1	3910	3910		45.972	14.338	1	203590			6681	8763	5354	5363	7852	7852					0.02464831372435583
EETQKAVLQ	9	Unmodified	_EETQKAVLQ_					0	0	0		ENSG00000197930|ENST00000395686|ERO1A	ENSG00000197930|ENST00000395686|ERO1A	ENSG00000197930|ENST00000395686|ERO1A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	523.279846	1044.54514	-0.074624	-3.9049E-05	-0.44037	-0.00023044	-0.51499	-0.00026948	523.2797301434414	59.168	0.93527	56.388	55.937	56.872	-2.7801	0.030825	0.00049397	NaN	45.972	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26631			6682	8763	5354	5363							0.02464831372435583
EETQTVSFEVK	11	Unmodified	_EETQTVSFEVK_					0	0	0		ENST00000426778.5_1_2:128015174-128051559:-|nuORF;ENSG00000163161|ENST00000285398|ERCC3;ERCC3|p.K311Nfs*41|1|0.03|ENSG00000163161|chr2:127288754-127288754|C/-|frameshift_variant	ENST00000426778.5_1_2:128015174-128051559:-|nuORF	ENST00000426778.5_1_2:128015174-128051559:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	432.8824462890625	3	432.882114	1295.62451	-0.33722	-0.00014598	-1.8954	-0.00082049	-2.2326	-0.00096646	432.881187415431	53.409	0.51974	53.409	53.172	53.692	0					32	11	4	0	0	0	0.39136	1	4243	4243		61.765	9.5974	1	1955100			6683	6274	5355	5364	7853	7853					-0.011475664641011463
EETRFFETL	9	Unmodified	_EETRFFETL_					0	0	0			REV__ENSG00000168792|ENST00000307201|ABHD15	REV__ENSG00000168792|ENST00000307201|ABHD15	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.782958984375	2	586.285128	1170.5557	1.1796	0.00069159	-4.0301	-0.0023628	-2.8505	-0.0016712	586.2825187688493	146.94	0.68202	146.94	146.47	147.16	0					18	13	2	0	0	0	0.027441	1	17192	17192		37.159	0	1	102680	+		6684	21404	5356	5365	7854	7854					-0.022751859731215518
EETSVLTQAL	10	Unmodified	_EETSVLTQAL_					0	0	0		ENSG00000025708|ENST00000252029|TYMP;nc|ENSG00000025708|P19971-2|TYMP;ENST00000487162.1_1_22:50967153-50967951:-|nuORF;ENST00000476284.1_1_22:50964673-50968379:-|nuORF	ENSG00000025708|ENST00000252029|TYMP	ENSG00000025708|ENST00000252029|TYMP	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.7838745117188	2	545.784961	1089.55537	-0.029258	-1.5968E-05	0.02214	1.2084E-05	-0.0071172	-3.8845E-06	545.7847166275907	113.09	1.2198	111.64	111.36	112.58	-1.4461					71	24	5	0	0	0	0.40664	1	10463	10463		67.494	3.2864	1	297060			6685	1047	5357	5366	7855	7855					0.014173943069863526
EETVRIVAL	9	Unmodified	_EETVRIVAL_					0	0	0		ENSG00000145012|ENST00000617246|LPP;LPP|p.D559H|1|0.18|ENSG00000145012|chr3:188872728-188872728|G/C|missense_variant;ENST00000488670.1_1_7:100469170-100470405:+|nuORF;ENST00000476870.5_1_7:100468185-100470922:+|nuORF;ENSG00000087077|ENST00000200457|TRIP6	ENSG00000145012|ENST00000617246|LPP	ENSG00000145012|ENST00000617246|LPP	MULTI-MSMS	OvCa9_classI_Rep2	2	515.3008422851562	2	515.300581	1028.58661	0.068143	3.5114E-05	1.6736	0.00086239	1.7417	0.00089751	515.3015293198682	97.694	0.34579	96.735	96.414	96.76	-0.95857					12	6	2	0	0	0	0.074342	2	8849	8844;8849		104.75	13.846	1	1027100			6686	5196	5358	5367	7856;7857	7857					0.07346012131756652
EETVRIVAL	9	Unmodified	_EETVRIVAL_					0	0	0		ENSG00000145012|ENST00000617246|LPP;LPP|p.D559H|1|0.18|ENSG00000145012|chr3:188872728-188872728|G/C|missense_variant;ENST00000488670.1_1_7:100469170-100470405:+|nuORF;ENST00000476870.5_1_7:100468185-100470922:+|nuORF;ENSG00000087077|ENST00000200457|TRIP6	ENSG00000145012|ENST00000617246|LPP	ENSG00000145012|ENST00000617246|LPP	MULTI-MATCH	OvCa9_classI_Rep3	3		2	515.300581	1028.58661	0.19983	0.00010297	0.2687	0.00013846	0.46853	0.00024143	515.3006780346036	98.408	0.46442	96.649	96.365	96.83	-1.7595	-0.034555	-0.00012432	NaN	104.75	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	849130			6687	5196	5358	5367							0.07346012131756652
EETVRIVAL	9	Unmodified	_EETVRIVAL_					0	0	0		ENSG00000145012|ENST00000617246|LPP;LPP|p.D559H|1|0.18|ENSG00000145012|chr3:188872728-188872728|G/C|missense_variant;ENST00000488670.1_1_7:100469170-100470405:+|nuORF;ENST00000476870.5_1_7:100468185-100470922:+|nuORF;ENSG00000087077|ENST00000200457|TRIP6	ENSG00000145012|ENST00000617246|LPP	ENSG00000145012|ENST00000617246|LPP	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	515.300581	1028.58661	-0.50753	-0.00026153	0.29794	0.00015353	-0.20958	-0.000108	515.3007569616782	98.991	0.36208	96.666	96.433	96.795	-2.3253	-0.017614	-9.4183E-05	NaN	104.75	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	792000			6688	5196	5358	5367							0.07346012131756652
EETYGRHNY	9	Unmodified	_EETYGRHNY_					0	0	0			REV__nc|ENSG00000243660|B1APH4|ZNF487	REV__nc|ENSG00000243660|B1APH4|ZNF487	MULTI-SECPEP	OvCa9_classI_Rep4_	4	584.3550415039062	2	584.754527	1167.4945	-1.9676	-0.0011505	-1.3386	-0.00078274	-3.3061	-0.0019333	584.7536438204871	146.54	0.62772	145.11	144.8	145.43	-1.4357					18	11	2	0	0	0	0.027462	1	14385	14385		30.504	3.8107	1	16268	+		6689	29160	5359	5368	7858	7858					-0.08254697952565948
EEVEALYSL	9	Unmodified	_EEVEALYSL_					0	0	0		ENST00000526030.1_1_11:77938056-78128734:-|nuORF	ENST00000526030.1_1_11:77938056-78128734:-|nuORF	ENST00000526030.1_1_11:77938056-78128734:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	526.7621459960938	2	526.760955	1051.50736	0.69507	0.00036614	3.3177	0.0017476	4.0127	0.0021138	526.7626305368649	121.64	1.7818	120.61	120.22	122	-1.0286					87	33	4	0	0	0	0.29717	1	9318	9318		63.306	4.5243	1	598650			6690	13208	5360	5369	7859	7859					-0.016336796130417497
EEVEIKCPLN	10	Unmodified	_EEVEIKCPLN_					0	0	0		ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.Y2986Sfs*28|1|0.8|ENSG00000168702|chr2:140495631-140495643|TGTAAGTCCCGTA/-|frameshift_variant;LRP1B|p.R686Gfs*5|1|0.06|ENSG00000168702|chr2:141015830-141015830|G/-|frameshift_variant;LRP1B|p.F2011Yfs*4|1|0.04|ENSG00000168702|chr2:140702545-140702546|-/T|frameshift_variant;LRP1B|p.F2011Tfs*5|1|0.04|ENSG00000168702|chr2:140702546-140702547|-/AGGT|frameshift_variant;LRP1B|p.S2029Qfs*7|1|0.23|ENSG00000168702|chr2:140702493-140702493|G/-|frameshift_variant;LRP1B|p.V535Cfs*2|1|0.28|ENSG00000168702|chr2:141049172-141049173|-/A|frameshift_variant	ENSG00000168702|ENST00000389484|LRP1B	ENSG00000168702|ENST00000389484|LRP1B	MULTI-MSMS	OvCa9_classI_Rep4_	4	587.2965698242188	2	587.294639	1172.57472	-1.8305	-0.001075	2.6431	0.0015523	0.81269	0.00047729	587.2961004815837	119.51	2.07	118.17	117.83	119.9	-1.3444					114	39	5	0	0	0	0.75313	1	11194	11194		24.519	4.4887	1	737630			6691	6934	5361	5370	7860	7860					-0.004659726737372694
EEVGAQHLEE	10	Unmodified	_EEVGAQHLEE_					0	0	0		ENST00000328914.4_1_7:4802311-4802611:+|nuORF	ENST00000328914.4_1_7:4802311-4802611:+|nuORF	ENST00000328914.4_1_7:4802311-4802611:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	570.7633666992188	2	570.762017	1139.50948	-0.68728	-0.00039227	3.6306	0.0020722	2.9434	0.00168	570.7639375463239	41.921	5.4029	41.921	39.711	45.114	0					302	122	5	0	0	0	0.52439	1	2747	2747		51.193	6.8155	1	2972500			6692	10426	5362	5371	7861	7861					-0.05469250875216858
EEVGLFNEL	9	Unmodified	_EEVGLFNEL_					0	0	0		nc|ENSG00000115966|P15336-4|ATF2;nc|ENSG00000115966|P15336-5|ATF2;ENSG00000115966|ENST00000264110|ATF2;nc|ENSG00000115966|P15336-3|ATF2;nc|ENSG00000115966|P15336-7|ATF2;nc|ENSG00000170653|P17544-4|ATF7;nc|ENSG00000170653|P17544-2|ATF7;nc|ENSG00000170653|P17544-3|ATF7;ENSG00000170653|ENST00000420353|ATF7;nc|ENSG00000170653|P17544-1|ATF7;ENST00000550373.2_1_12:53937026-53937696:-|nuORF;nc|ENSG00000170653|P17544-5|ATF7	nc|ENSG00000115966|P15336-4|ATF2;ENST00000550373.2_1_12:53937026-53937696:-|nuORF	nc|ENSG00000115966|P15336-4|ATF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.26123046875	2	525.261122	1048.50769	1.914	0.0010053	-1.952	-0.0010253	-0.03801	-1.9965E-05	525.2599110724199	136.17	1.1696	134.63	134.25	135.42	-1.5436					55	23	3	0	0	0	0.2422	1	13197	13197		69.628	6.6492	1	96930			6693	3143;13586	5363	5372	7862	7862					-0.014622598931964603
EEVGPATTEL	10	Unmodified	_EEVGPATTEL_					0	0	0			REV__nc|ENSG00000157766|P16112-3|ACAN	REV__nc|ENSG00000157766|P16112-3|ACAN	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.811767578125	2	523.256037	1044.49752	-0.43552	-0.00022789	4.4508	0.0023289	4.0153	0.002101	523.258437972542	60.151	1.0962	57.381	56.933	58.029	-2.7702					42	20	4	0	0	0	0.026688	1	4441	4441		49.442	0	1	71876	+		6694	20532	5364	5373	7863	7863					-0.02294867618434182
EEVGRWVAHQ	10	Unmodified	_EEVGRWVAHQ_					0	0	0		ENSG00000105429|ENST00000251268|MEGF8;nc|ENSG00000105429|Q7Z7M0-2|MEGF8;MEGF8|p.R1953Pfs*3|1|0.11|ENSG00000105429|chr19:42362390-42362391|-/C|frameshift_variant	ENSG00000105429|ENST00000251268|MEGF8	ENSG00000105429|ENST00000251268|MEGF8	MULTI-SECPEP	OvCa9_classI_Rep3	3	604.8302612304688	2	605.801811	1209.58907	1.3845	0.00083875	-1.8463	-0.0011185	-0.46182	-0.00027977	606.3018811126165	78.393	0.80332	76.041	75.698	76.501	-2.3527					37	15	4	0	0	0	0.027221	1	4125	4125		19.104	10.868	1	91559			6695	2459	5365	5374	7864	7864					-0.007341394105878862
EEVIGTIKVNG	11	Unmodified	_EEVIGTIKVNG_					0	0	0			REV__tr|A0A7D7A564|A0A7D7A564_9CLOTendopeptidaseLaOS=ClostridiumintestinaleOX=36845GN=lonBPE=3SV=1	REV__tr|A0A7D7A564|A0A7D7A564_9CLOTendopeptidaseLaOS=ClostridiumintestinaleOX=36845GN=lonBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	580.301513671875	2	579.821878	1157.6292	-1.1715	-0.00067923	2.8452	0.0016497	1.6738	0.0009705	579.8231861336235	64.029	0.57684	61.304	60.968	61.545	-2.7246					25	10	3	0	0	0	0.025861	1	4849	4849		23.523	0	1	40691	+		6696	32626	5366	5375	7865	7865					0.056693624693252787
EEVIHIPFF	9	Unmodified	_EEVIHIPFF_					0	0	0		tr|A0A553STZ9|A0A553STZ9_NIACISulfataseOS=NialliacirculansOX=1397GN=CEQ21_05955PE=4SV=1	tr|A0A553STZ9|A0A553STZ9_NIACISulfataseOS=NialliacirculansOX=1397GN=CEQ21_05955PE=4SV=1	tr|A0A553STZ9|A0A553STZ9_NIACISulfataseOS=NialliacirculansOX=1397GN=CEQ21_05955PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.8885498046875	2	565.797675	1129.5808	2.1412	0.0012115	0.27858	0.00015762	2.4198	0.0013691	565.7977946005308	118.39	1.4025	118.39	118.06	119.47	0					77	29	5	0	0	0	0.027462	1	13621	13621		31.955	7.7521	1	3450800			6697	34558	5367	5376	7866	7866					0.021189136200973735
EEVKDRCTL	9	Unmodified	_EEVKDRCTL_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65622809-65623088:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	OvCa99_classI_Rep5	1	546.7713623046875	2	546.771331	1091.52811	-0.40004	-0.00021873	-0.55372	-0.00030276	-0.95376	-0.00052149	546.7711219104901	47.487	4.8797	47.487	46.198	51.078	0					210	111	4	0	0	0	0.064985	5	3424	3400;3424;3448;3473;3516		110.12	41.333	1	31908000			6698	7317	5368	5377	7867;7868;7869;7870;7871	7868					-0.013994125050203365
EEVKLEKN	8	Unmodified	_EEVKLEKN_					0	0	0		tr|A0A7D6VRR0|A0A7D6VRR0_9CLOTUvrABCsystemproteinAOS=ClostridiumintestinaleOX=36845GN=uvrAPE=3SV=1	tr|A0A7D6VRR0|A0A7D6VRR0_9CLOTUvrABCsystemproteinAOS=ClostridiumintestinaleOX=36845GN=uvrAPE=3SV=1	tr|A0A7D6VRR0|A0A7D6VRR0_9CLOTUvrABCsystemproteinAOS=ClostridiumintestinaleOX=36845GN=uvrAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.749755859375	2	494.769114	987.523675	-0.024804	-1.2272E-05	1.6374	0.00081014	1.6126	0.00079787	494.76986145572533	64.815	0.5695	64.815	64.503	65.072	0					18	13	2	0	0	0	0.028476	1	5905	5905		68.485	9.7027	1	229560			6699	34950	5369	5378	7872	7872					0.02941446343709231
EEVKNIQSV	9	Unmodified	_EEVKNIQSV_					0	0	0		tr|A0A7D7A100|A0A7D7A100_9CLOTLytTRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11685PE=4SV=1	tr|A0A7D7A100|A0A7D7A100_9CLOTLytTRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11685PE=4SV=1	tr|A0A7D7A100|A0A7D7A100_9CLOTLytTRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11685PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2504272460938	2	523.279846	1044.54514	0.064339	3.3668E-05	-0.47454	-0.00024831	-0.4102	-0.00021465	523.2794638402848	72.023	0.57333	72.023	71.877	72.45	0					24	13	2	0	0	0	0.027462	1	7045	7045		40.778	0	1	2521000			6700	36017	5370	5379	7873	7873					0.02464831372435583
EEVKVGLRR	9	Unmodified	_EEVKVGLRR_					0	0	0			REV__tr|A0A7D6VZN8|A0A7D6VZN8_9CLOTcitramalatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20940PE=3SV=1	REV__tr|A0A7D6VZN8|A0A7D6VZN8_9CLOTcitramalatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20940PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	542.3718872070312	2	543.324922	1084.63529	-0.29115	-0.00015819	-0.035124	-1.9084E-05	-0.32628	-0.00017727	543.3247978126185	40.631	0.83759	37.921	37.551	38.389	-2.7097					35	16	3	0	0	0	0.027462	1	2112	2112		44.117	1.7207	1	36663	+		6701	31843	5371	5380	7874	7874					0.09635925491511443
EEVLHRHA	8	Unmodified	_EEVLHRHA_					0	0	0			REV__nc|ENSG00000132600|Q9NVM4-4|PRMT7;REV__ENST00000565356.5_1_16:68349816-68386396:+|nuORF	REV__nc|ENSG00000132600|Q9NVM4-4|PRMT7	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.7547912597656	2	495.759415	989.504277	0.60001	0.00029746	0.82258	0.0004078	1.4226	0.00070526	495.75981338714587	152.09	0.47583	152.09	151.88	152.36	0					14	9	2	0	0	0	0.028476	1	17823	17823		33.516	1.5607	1	108390	+		6702	19090;27681	5372	5381	7875	7875					0.00910534843478672
EEVLPFEVEL	10	Unmodified	_EEVLPFEVEL_					0	0	0			REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9	REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9	MULTI-MSMS	OvCa99_classI_Rep5	1	602.3137817382812	2	602.310812	1202.60707	1.9374	0.0011669	3.4617	0.002085	5.3991	0.003252	602.3130063671283	125.56	0.74564	125.56	125.25	125.99	0					42	17	3	0	0	0	0.55359	1	14507	14507		47.657	1.2006	1	397180	+		6703	16315	5373	5382	7876	7876					0.013871380009277345
EEVNLRFCM	9	Unmodified	_EEVNLRFCM_					0	0	0		tr|A0A553SPL0|A0A553SPL0_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_26595PE=4SV=1	tr|A0A553SPL0|A0A553SPL0_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_26595PE=4SV=1	tr|A0A553SPL0|A0A553SPL0_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_26595PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	570.7632446289062	2	570.762452	1139.51035	-0.68728	-0.00039227	2.8699	0.001638	2.1826	0.0012458	570.7639375463239	41.921	5.4029	41.921	39.711	45.114	0					302	122	5	0	0	0	0.22961	2	2621	2598;2621		71.296	4.8664	1	2972500			6704	34057	5374	5383	7877;7878	7878					-0.05382451031528035
EEVNVPDDVLQ	11	Unmodified	_EEVNVPDDVLQ_					0	0	0			REV__tr|A0A553SP75|A0A553SP75_NIACIYicCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25795PE=3SV=1	REV__tr|A0A553SP75|A0A553SP75_NIACIYicCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25795PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	629.2794799804688	2	628.803882	1255.59321	2.1712	0.0013653	-1.0805	-0.00067944	1.0907	0.00068582	629.3051364719821	117.63	0.47125	117.63	117.41	117.88	0					12	9	2	0	0	0	0.025508	1	13507	13507		41.08	0	1	80014	+		6705	30505	5375	5384	7879	7879					-0.02436139498195189
EEVPCAMME	9	Unmodified	_EEVPCAMME_					0	0	0		ENST00000590548.5_1_19:11597897-11616622:-|nuORF;ENSG00000161914|ENST00000293771|ZNF653	ENST00000590548.5_1_19:11597897-11616622:-|nuORF	ENST00000590548.5_1_19:11597897-11616622:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3119506835938	2	519.700671	1037.38679	1.0305	0.00053557	1.9051	0.00099006	2.9356	0.0015256	519.7013747210048	85.518	0.53362	82.872	82.709	83.243	-2.6463					15	10	2	0	0	0	0.027462	1	7236	7236		47.916	15.103	1	24524			6706	6142	5376	5385	7880	7880					-0.1304087019416329
EEVPHEPPFM	10	Unmodified	_EEVPHEPPFM_					0	0	0			REV__ENSG00000128731|ENST00000261609|HERC2	REV__ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	OvCa99_classI_Rep5	1	606.2732543945312	2	606.273706	1210.53286	-0.09929	-6.0197E-05	-1.3379	-0.00081116	-1.4372	-0.00087135	606.2731854785216	35.452	1.5091	35.452	35.198	36.707	0					84	32	5	0	0	0	0.20836	1	1798	1798		71.296	33.484	1	6880800	+		6707	18868	5377	5386	7881	7881					-0.06398528362274192
EEVPLNLLP	9	Unmodified	_EEVPLNLLP_					0	0	0			REV__tr|A0A553SJS1|A0A553SJS1_NIACIAmidaseOS=NialliacirculansOX=1397GN=CEQ21_17430PE=4SV=1	REV__tr|A0A553SJS1|A0A553SJS1_NIACIAmidaseOS=NialliacirculansOX=1397GN=CEQ21_17430PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.8118286132812	2	512.289682	1022.56481	-0.92213	-0.0004724	4.076	0.0020881	3.1539	0.0016157	512.2904753365281	95.055	0.35112	92.586	92.46	92.811	-2.4685					11	6	2	0	0	0	0.027462	1	8346	8346		44.117	0	1	28396	+		6708	30036	5378	5387	7882	7882					0.05443207383189019
EEVPPDSDDNK	11	Unmodified	_EEVPPDSDDNK_					0	0	0		ENSG00000203485|ENST00000392634|INF2	ENSG00000203485|ENST00000392634|INF2	ENSG00000203485|ENST00000392634|INF2	MULTI-MSMS	OvCa99_classI_Rep5	1	623.271484375	2	622.767497	1243.52044	1.8693	0.0011642	0.46564	0.00028999	2.335	0.0014541	622.7681258029886	85.727	1.7616	85.727	85.211	86.972	0					129	42	6	0	0	0	0.50203	1	8993	8993		36.447	2.2742	1	35613000			6709	8921	5379	5388	7883	7883					-0.09157893291603614
EEVPSALPR	9	Unmodified	_EEVPSALPR_					0	0	0		ENSG00000188783|ENST00000343110|PRELP	ENSG00000188783|ENST00000343110|PRELP	ENSG00000188783|ENST00000343110|PRELP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.790771484375	2	499.269281	996.52401	-1.6267	-0.00081215	0.81517	0.00040699	-0.81151	-0.00040516	499.26946520982085	48.928	1.0913	45.82	45.244	46.335	-3.1077					33	20	2	0	0	0	0.027462	1	2716	2716		27.882	3.6795	1	46958			6710	8502	5380	5389	7884	7884					0.02560866063561207
EEVPSALPR	9	Unmodified	_EEVPSALPR_					0	0	0		ENSG00000188783|ENST00000343110|PRELP	ENSG00000188783|ENST00000343110|PRELP	ENSG00000188783|ENST00000343110|PRELP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	499.269281	996.52401	-1.048	-0.00052324	-2.0998	-0.0010484	-3.1478	-0.0015716	499.26838778608436	48.621	0.74847	45.861	45.428	46.177	-2.7603	0.020315	-0.0020609	NaN	25.574	24	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18007			6711	8502	5380	5389							0.02560866063561207
EEVQEFHQL	9	Unmodified	_EEVQEFHQL_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	MULTI-MSMS	OvCa99_classI_Rep5	1	579.7763061523438	2	579.774928	1157.5353	2.1941	0.0012721	0.13874	8.044E-05	2.3328	0.0013525	579.7748857464154	75.843	0.64181	75.843	75.639	76.28	0					32	15	3	0	0	0	0.021573	1	7568	7568		145.16	60.24	1	3213600			6712	6506	5381	5390	7885	7885					-0.03716356632935458
EEVQEFHQL	9	Unmodified	_EEVQEFHQL_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	579.774928	1157.5353	-1.6114	-0.00093423	1.0271	0.00059549	-0.58426	-0.00033874	579.7755587660569	77.898	0.59567	75.545	75.353	75.949	-2.3527	-0.14914	0.00083489	NaN	145.16	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40537			6713	6506	5381	5390							-0.03716356632935458
EEVQFLKTL	9	Unmodified	_EEVQFLKTL_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-MSMS	OvCa9_classI_Rep2	2	553.80712890625	2	553.808239	1105.60193	0.79046	0.00043776	-1.4126	-0.00078228	-0.62209	-0.00034452	553.8074400402646	107.27	1.4685	106.96	106.67	108.14	-0.30836					74	29	4	0	0	0	0.011767	3	10021	10015;10021;10027		163.15	54.786	1	337720			6714	1849	5382	5391	7886;7887;7888	7887					0.05334878928965736
EEVQFLKTL	9	Unmodified	_EEVQFLKTL_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8092651367188	2	553.808239	1105.60193	-1.235	-0.00068394	0.65958	0.00036528	-0.57539	-0.00031866	553.8086492861518	108.6	1.5356	106.88	106.57	108.1	-1.7256					78	29	4	0	0	0	0.0072874	3	9952	9941;9952;9965		190.26	62.8	1	413750			6715	1849	5382	5391	7889;7890;7891	7890					0.05334878928965736
EEVQFLKTL	9	Unmodified	_EEVQFLKTL_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	553.808239	1105.60193	-0.3298	-0.00018265	-0.094153	-5.2143E-05	-0.42396	-0.00023479	553.8081820416556	108.03	1.2348	106.83	106.59	107.82	-1.1978	-0.031835	0.00028255	NaN	190.26	83	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	422490			6716	1849	5382	5391							0.05334878928965736
EEVQKRLK	8	Unmodified	_EEVQKRLK_					0	0	0			REV__nc|ENSG00000263001|P78347-2|GTF2I;REV__ENST00000544802.5_1_7:72593260-72619478:+|nuORF	REV__ENST00000544802.5_1_7:72593260-72619478:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.281005859375	2	515.306198	1028.59784	-0.065757	-3.3885E-05	4.3903	0.0022623	4.3245	0.0022285	515.3079933142649	62.271	0.82161	62.271	62.038	62.86	0					51	19	3	0	0	0	0.028476	1	5616	5616		55.504	0	1	1321400	+		6717	23576;27405	5383	5392	7892	7892					0.08468834225891442
EEVQSLPLPL	10	Unmodified	_EEVQSLPLPL_					0	0	0		ENSG00000145912|ENST00000274606|NHP2	ENSG00000145912|ENST00000274606|NHP2	ENSG00000145912|ENST00000274606|NHP2	MULTI-MSMS	OvCa99_classI_Rep5	1	562.8150024414062	2	562.813522	1123.61249	1.7169	0.0009663	0.16813	9.4628E-05	1.885	0.0010609	562.8135640109886	143.44	1.6242	143.44	143.02	144.64	0					83	32	4	0	0	0	0.014676	2	16765	16765;16790		154.12	55.489	1	3982000			6718	5253	5384	5393	7893;7894	7893					0.055628615833938966
EEVQSLPLPL	10	Unmodified	_EEVQSLPLPL_					0	0	0		ENSG00000145912|ENST00000274606|NHP2	ENSG00000145912|ENST00000274606|NHP2	ENSG00000145912|ENST00000274606|NHP2	MULTI-MSMS	OvCa9_classI_Rep2	2	562.8138427734375	2	562.813522	1123.61249	-0.9656	-0.00054345	0.86138	0.0004848	-0.10422	-5.8656E-05	562.813897286719	140.98	1.3862	140.75	140.43	141.82	-0.22696					80	27	4	0	0	0	0.32926	8	14114	14099;14102;14108;14114;14120;14126;14140;14147		77.318	12.461	1	329770			6719	5253	5384	5393	7895;7896;7897;7898;7899;7900;7901;7902	7898					0.055628615833938966
EEVQSLPLPL	10	Unmodified	_EEVQSLPLPL_					0	0	0		ENSG00000145912|ENST00000274606|NHP2	ENSG00000145912|ENST00000274606|NHP2	ENSG00000145912|ENST00000274606|NHP2	MULTI-MSMS	OvCa9_classI_Rep3	3	562.813720703125	2	562.813522	1123.61249	-2.633	-0.0014819	2.4421	0.0013745	-0.19089	-0.00010744	562.8147781508586	141.55	1.4859	140.54	140.19	141.68	-1.0106					91	29	5	0	0	0	0.39172	5	11711	11693;11699;11711;11717;11731		69.628	20.092	1	322010			6720	5253	5384	5393	7903;7904;7905;7906;7907	7905					0.055628615833938966
EEVRDILKI	9	Unmodified	_EEVRDILKI_					0	0	0			REV__tr|A0A553SK47|A0A553SK47_NIACICelldivisionproteinZapAOS=NialliacirculansOX=1397GN=zapAPE=4SV=1	REV__tr|A0A553SK47|A0A553SK47_NIACICelldivisionproteinZapAOS=NialliacirculansOX=1397GN=zapAPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	557.8292846679688	2	557.826963	1113.63937	1.196	0.00066716	1.5395	0.00085876	2.7355	0.0015259	557.8276473095889	132.06	1.6479	132.06	131.34	132.99	0					82	34	4	0	0	0	0.34118	1	15357	15357		58.246	6.9108	1	1556100	+		6721	30075	5385	5394	7908	7908					0.08709970194558991
EEVREHVKL	9	Unmodified	_EEVREHVKL_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MSMS	OvCa99_classI_Rep5	1	569.8145751953125	2	569.814387	1137.61422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.42	1	110.42	109.92	110.92	0								0	0	0	0.16934	1	12530	12530		53.089	1.7535	1				6722	4447	5386	5395	7909	7909					0.05091915391994917
EEVRKPQPEK	10	Unmodified	_EEVRKPQPEK_					0	0	0			REV__nc|ENSG00000111913|Q9Y4F9|RIPOR2	REV__nc|ENSG00000111913|Q9Y4F9|RIPOR2	MULTI-MSMS	OvCa99_classI_Rep5	1	413.8944396972656	3	413.894577	1238.6619	0.56191	0.00023257	-0.6775	-0.00028041	-0.11558	-4.784E-05	413.8942085820353	29.91	0.49983	29.91	29.636	30.136	0					20	9	3	0	0	0	0.6898	1	1118	1118		31.634	3.0575	1	143390	+		6723	28799	5387	5396	7910	7910					0.05211569592165688
EEVSMLRSII	10	Unmodified	_EEVSMLRSII_					0	0	0			REV__nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	REV__nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	MULTI-MSMS	OvCa9_classI_Rep4_	4	588.816162109375	2	588.818281	1175.62201	1.1221	0.00066071	-4.0887	-0.0024075	-2.9666	-0.0017468	588.8157526868016	129.31	1.285	127.85	127.45	128.73	-1.4565					57	25	3	0	0	0	0.44431	1	12377	12377		62.107	0	1	201630	+		6724	19411	5388	5397	7911	7911					0.04122306597264469
EEVTDRSQL	9	Unmodified	_EEVTDRSQL_					0	0	0		IRF8|p.F252Sfs*22|1|0.81|ENSG00000140968|chr16:85918568-85918569|-/AGTGCCTATGAGACGGAGTA|frameshift_variant;ENSG00000140968|ENST00000268638|IRF8	IRF8|p.F252Sfs*22|1|0.81|ENSG00000140968|chr16:85918568-85918569|-/AGTGCCTATGAGACGGAGTA|frameshift_variant	IRF8|p.F252Sfs*22|1|0.81|ENSG00000140968|chr16:85918568-85918569|-/AGTGCCTATGAGACGGAGTA|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	538.7649536132812	2	538.76456	1075.51457	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.843	1	51.843	51.343	52.343	0								0	0	0	0.14175	1	4028	4028		65.465	17.808	1				6725	4884	5389	5398	7912	7912					-0.02016947012612036
EEVTGMLQKI	10	Oxidation (M)	_EEVTGM(Oxidation (M))LQKI_		EEVTGM(1)LQKI		EEVTGM(44)LQKI	0	0	1			REV__nc|ENSG00000127914|Q99996-5|AKAP9	REV__nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MSMS	OvCa9_classI_Rep4_	4	582.3009643554688	2	582.302464	1162.59037	-1.3273	-0.00077288	-1.2653	-0.00073679	-2.5926	-0.0015097	582.3016182084024	109.12	1.7654	107.4	106.97	108.73	-1.7256					78	33	4	0	0	0	0.58067	1	10050	10050		44.377	6.5657	1	574570	+		6726	18830	5390	5399	7913	7913		434			0.015583138433157728
EEWACCGPGAE	11	Unmodified	_EEWACCGPGAE_					0	0	0			REV__ENST00000340022.6_2_7:91874891-91875065:-|nuORF	REV__ENST00000340022.6_2_7:91874891-91875065:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.2940673828125	2	576.210249	1150.40594	2.0324	0.0011711	2.8748	0.0016565	4.9072	0.0028276	576.2119192215715	82.738	0.34326	82.738	82.522	82.865	0					11	7	2	0	0	0	0.025861	1	8586	8586		37.812	16.865	1	160520	+		6727	24621	5391	5400	7914	7914					-0.1632419757891057
EEWIFDPIE	9	Unmodified	_EEWIFDPIE_					0	0	0			REV__tr|A0A553SUH5|A0A553SUH5_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_07015PE=4SV=1	REV__tr|A0A553SUH5|A0A553SUH5_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_07015PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	590.2684936523438	2	589.274229	1176.53391	-6.5842	-0.0038799	-1.0115	-0.00059606	-7.5957	-0.004476	589.7753134891271	160.44	0.35213	158.83	158.58	158.93	-1.6101					11	7	2	0	0	0	0.027455	1	15847	15847		51.335	0	1	8781.2	+		6728	31078	5392	5401	7915	7915					-0.04729990721716604
EEWRLLVVTL	10	Unmodified	_EEWRLLVVTL_					0	0	0			REV__ENST00000585439.1_1_19:10446311-10450252:-|nuORF	REV__ENST00000585439.1_1_19:10446311-10450252:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.7513732910156	3	419.911568	1256.71287	0.21336	8.9592E-05	-3.2932	-0.0013829	-3.0799	-0.0012933	419.91007897750075	62.078	0.50909	62.078	61.826	62.335	0					17	11	2	0	0	0	0.026674	1	5524	5524		40.058	0	1	1206000	+		6729	16997	5393	5402	7916	7916					0.09478518637047273
EEWRRPLQ	8	Unmodified	_EEWRRPLQ_					0	0	0			REV__ENST00000258415.8_1_2:219646678-219646789:+|nuORF	REV__ENST00000258415.8_1_2:219646678-219646789:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.8226928710938	2	557.293622	1112.57269	-0.92927	-0.00051787	-4.3911	-0.0024471	-5.3204	-0.002965	557.2910130504365	103.69	0.76396	103.69	103.39	104.15	0					40	17	3	0	0	0	0.028476	1	11636	11636		33.516	0	1	1384100	+		6730	23909	5394	5403	7917	7917					0.020907794233153254
EEWVELSQ	8	Unmodified	_EEWVELSQ_					0	0	0			REV__ENST00000261207.9_2_12:80169574-80169661:-|nuORF	REV__ENST00000261207.9_2_12:80169574-80169661:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.7649230957031	2	510.237647	1018.46074	-0.19604	-0.00010003	-2.082	-0.0010623	-2.2781	-0.0011623	510.235812676811	59.101	0.59776	55.709	55.502	56.1	-3.392					27	11	3	0	0	0	0.028476	1	3952	3952		60.972	10.947	1	35150	+		6731	23940	5395	5404	7918	7918					-0.047751194443321765
EEYGLVVRL	9	Unmodified	_EEYGLVVRL_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;RBFA-SPG11|2|fusion;RBFA-SPG11|1|fusion	nc|ENSG00000104133|Q96JI7-3|SPG11;RBFA-SPG11|2|fusion	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	OvCa9_classI_Rep2	2	539.2994995117188	2	539.300581	1076.58661	-0.59337	-0.00032001	0.84829	0.00045749	0.25492	0.00013748	539.3010800438806	109.86	0.64351	109.69	109.46	110.11	-0.17237					34	12	3	0	0	0	0.56889	1	10333	10333		35.618	0.41757	1	125700			6732	2354;15543	5396	5405	7919	7919					0.05138012131760661
EEYGLVVRL	9	Unmodified	_EEYGLVVRL_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;RBFA-SPG11|2|fusion;RBFA-SPG11|1|fusion	nc|ENSG00000104133|Q96JI7-3|SPG11;RBFA-SPG11|2|fusion	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	OvCa9_classI_Rep3	3	539.2996826171875	2	539.300581	1076.58661	1.4928	0.00080505	-1.5525	-0.00083725	-0.05971	-3.2201E-05	539.2997469536305	110.68	0.86591	109.54	109.29	110.16	-1.1444					45	16	4	0	0	0	0.31747	1	8000	8000		60.972	11.53	1	140400			6733	2354;15543	5396	5405	7920	7920					0.05138012131760661
EEYGLVVRL	9	Unmodified	_EEYGLVVRL_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;RBFA-SPG11|2|fusion;RBFA-SPG11|1|fusion	nc|ENSG00000104133|Q96JI7-3|SPG11;RBFA-SPG11|2|fusion	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	OvCa9_classI_Rep4_	4	539.2999267578125	2	539.300581	1076.58661	-0.16294	-8.7871E-05	0.35945	0.00019385	0.19652	0.00010598	539.3007694289824	111.12	1.0001	109.52	109.23	110.23	-1.6011					42	18	3	0	0	0	0.40667	1	10245	10245		51.335	3.4199	1	173020			6734	2354;15543	5396	5405	7921	7921					0.05138012131760661
EEYIDLFEL	9	Unmodified	_EEYIDLFEL_					0	0	0			REV__tr|A0A7D6W0Y9|A0A7D6W0Y9_9CLOTSEL1-likerepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01290PE=4SV=1	REV__tr|A0A7D6W0Y9|A0A7D6W0Y9_9CLOTSEL1-likerepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01290PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.8145751953125	2	585.781887	1169.54922	0.93807	0.00054951	-2.4799	-0.0014527	-1.5418	-0.00090316	586.2816183226724	155.56	0.71596	155.56	155.27	155.99	0					18	13	2	0	0	0	0.027462	1	18217	18217		37.159	0	1	71858	+		6735	31869	5397	5406	7922	7922					-0.02877123924508851
EEYLIEPL	8	Unmodified	_EEYLIEPL_					0	0	0		ENSG00000142303|ENST00000597188|ADAMTS10;nc|ENSG00000142303|Q9H324|ADAMTS10	ENSG00000142303|ENST00000597188|ADAMTS10	ENSG00000142303|ENST00000597188|ADAMTS10	MULTI-MSMS	OvCa99_classI_Rep5	1	503.25933837890625	2	503.260591	1004.50663	0.12806	6.4445E-05	-4.4223	-0.0022256	-4.2943	-0.0021611	503.25816090684356	52.756	1.0406	52.756	52.478	53.519	0					53	23	5	0	0	0	0.65582	1	4171	4171		52.299	1.1065	1	3932900			6736	4965	5398	5407	7923	7923					0.004555257379024624
EEYNTIENKVQ	11	Unmodified	_EEYNTIENKVQ_					0	0	0		tr|A0A7D6ZWU4|A0A7D6ZWU4_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_19315PE=3SV=1	tr|A0A7D6ZWU4|A0A7D6ZWU4_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_19315PE=3SV=1	tr|A0A7D6ZWU4|A0A7D6ZWU4_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_19315PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	456.22149658203125	3	456.221018	1365.64122	-0.22033	-0.00010052	-2.2843	-0.0010421	-2.5046	-0.0011427	456.2200212484985	61.819	1.1191	61.819	61.542	62.661	0					68	26	4	0	0	0	0.54737	1	5461	5461		49.466	0	1	5331900			6737	35855	5399	5408	7924	7924					-0.026970655781497044
EEYTGELEQL	10	Unmodified	_EEYTGELEQL_					0	0	0			REV__ENSG00000172037|ENST00000305544|LAMB2	REV__ENSG00000172037|ENST00000305544|LAMB2	MULTI-SECPEP	OvCa9_classI_Rep2	2	606.3584594726562	2	605.777333	1209.54011	-1.3381	-0.00081059	2.8459	0.001724	1.5078	0.00091338	606.2809723055891	103.06	1.2333	102.37	101.79	103.02	-0.68459					38	24	2	0	0	0	0.02649	1	9577	9577		71.877	4.3838	1	24175	+		6738	21668	5400	5409	7925	7925					-0.056275172808454954
EEYTGELEQL	10	Unmodified	_EEYTGELEQL_					0	0	0			REV__ENSG00000172037|ENST00000305544|LAMB2	REV__ENSG00000172037|ENST00000305544|LAMB2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	605.777333	1209.54011	1.9913	0.0012063	-1.4536	-0.00088058	0.53767	0.00032571	605.7764173676454	103.78	0.78625	102.35	102.03	102.81	-1.4347	0.015288	-0.0014327	NaN	71.877	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37691	+		6739	21668	5400	5409							-0.056275172808454954
EEYTGELEQL	10	Unmodified	_EEYTGELEQL_					0	0	0			REV__ENSG00000172037|ENST00000305544|LAMB2	REV__ENSG00000172037|ENST00000305544|LAMB2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	605.777333	1209.54011	0.19759	0.00011969	0.95916	0.00058103	1.1567	0.00070073	605.7777233904312	104.39	0.73402	102.27	102.01	102.74	-2.1192	-0.058613	0.0014906	NaN	71.877	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25911	+		6740	21668	5400	5409							-0.056275172808454954
EEYTKKLNTQ	10	Unmodified	_EEYTKKLNTQ_					0	0	0		ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	OvCa99_classI_Rep5	1	627.3218383789062	2	627.322242	1252.62993	-0.38023	-0.00023852	0.66705	0.00041845	0.28682	0.00017993	627.3226329663665	38.599	0.84767	38.599	38.394	39.242	0					62	18	5	0	0	0	0.0061832	2	2195	2195;2219		164.46	60.398	1	3413500			6741	3289	5401	5410	7926;7927	7926					0.013721571183850756
EFAEDVIQV	9	Unmodified	_EFAEDVIQV_					0	0	0		nc|ENSG00000102081|Q06787-8|FMR1;nc|ENSG00000102081|Q06787-6|FMR1;nc|ENSG00000102081|Q06787-2|FMR1;nc|ENSG00000102081|Q06787-4|FMR1;nc|ENSG00000102081|Q06787-5|FMR1;nc|ENSG00000102081|Q06787-9|FMR1;nc|ENSG00000102081|Q06787-7|FMR1;nc|ENSG00000102081|Q06787-3|FMR1;ENSG00000102081|ENST00000370475|FMR1;nc|ENSG00000102081|Q06787-11|FMR1;nc|ENSG00000102081|Q06787-10|FMR1	nc|ENSG00000102081|Q06787-8|FMR1;nc|ENSG00000102081|Q06787-11|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.8041381835938	2	525.261122	1048.50769	-1.2635	-0.00066367	3.316	0.0017417	2.0525	0.0010781	525.2627698453674	80.389	0.68513	77.678	77.269	77.954	-2.7106					20	13	2	0	0	0	0.027462	1	6591	6591		34.173	25.35	1	24731			6742	2221;14932	5402	5411	7928	7928					-0.014622598931964603
EFAEDVIQV	9	Unmodified	_EFAEDVIQV_					0	0	0		nc|ENSG00000102081|Q06787-8|FMR1;nc|ENSG00000102081|Q06787-6|FMR1;nc|ENSG00000102081|Q06787-2|FMR1;nc|ENSG00000102081|Q06787-4|FMR1;nc|ENSG00000102081|Q06787-5|FMR1;nc|ENSG00000102081|Q06787-9|FMR1;nc|ENSG00000102081|Q06787-7|FMR1;nc|ENSG00000102081|Q06787-3|FMR1;ENSG00000102081|ENST00000370475|FMR1;nc|ENSG00000102081|Q06787-11|FMR1;nc|ENSG00000102081|Q06787-10|FMR1	nc|ENSG00000102081|Q06787-8|FMR1;nc|ENSG00000102081|Q06787-11|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	525.261122	1048.50769	-0.14148	-7.4311E-05	2.5354	0.0013317	2.3939	0.0012574	525.2623377142984	79.813	0.50304	77.473	77.206	77.709	-2.3399	-0.10253	-0.0006054	NaN	31.53	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18201			6743	2221;14932	5402	5411							-0.014622598931964603
EFAEHRKIL	9	Unmodified	_EFAEHRKIL_					0	0	0			REV__nc|ENSG00000070182|P11277-3|SPTB;REV__nc|ENSG00000115306|Q01082-3|SPTBN1	REV__nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MSMS	OvCa99_classI_Rep5	1	571.8236083984375	2	571.819473	1141.62439	0.10677	6.1051E-05	3.4118	0.0019509	3.5185	0.002012	571.8214194480303	73.66	5.2921	73.66	72.842	78.134	0					327	131	5	0	0	0	0.33652	1	7177	7177		58.782	9.3404	1	98438000	+		6744	18234;16878	5403	5412	7929	7929					0.059245231172326385
EFAICPAPQV	10	Unmodified	_EFAICPAPQV_					0	0	0		ENST00000442739.1_1_22:21363397-21363730:-|nuORF	ENST00000442739.1_1_22:21363397-21363730:-|nuORF	ENST00000442739.1_1_22:21363397-21363730:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.7838745117188	2	537.76806	1073.52157	1.7971	0.0009664	-3.5914	-0.0019314	-1.7944	-0.00096495	537.7679252367861	77.799	0.3391	77.799	77.672	78.011	0					11	7	2	0	0	0	0.026956	1	7860	7860		26.693	3.6504	1	55089			6745	11946	5404	5413	7930	7930					-0.01225305665752785
EFAKVLELD	9	Unmodified	_EFAKVLELD_					0	0	0		nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;PPP2R1A|p.M499*|1|0.2|ENSG00000105568|chr19:52221110-52221110|A/-|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A	nc|ENSG00000137713|P30154-4|PPP2R1B	nc|ENSG00000137713|P30154-4|PPP2R1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.8104248046875	2	532.28714	1062.55973	0.15903	8.4652E-05	1.7098	0.00091008	1.8688	0.00099474	532.2864372843655	62.724	0.11545	62.724	62.661	62.777	0					4	2	2	0	0	0	0.027462	1	5598	5598		49.442	12.282	1	60786			6746	4608	5405	5414	7931	7931					0.030949035205594555
EFALAPGPKKR	11	Unmodified	_EFALAPGPKKR_					0	0	0			REV__ENST00000459635.1_1_1:110033652-110034687:+|nuORF	REV__ENST00000459635.1_1_1:110033652-110034687:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	606.8170776367188	2	607.356222	1212.69789	-0.20984	-0.00012745	-1.4428	-0.00087628	-1.6526	-0.0010037	607.3544791534966	96.492	1.233	95.504	95.053	96.286	-0.98827					71	24	4	0	0	0	0.025988	1	8659	8659		52.937	36.219	1	161480	+		6747	20760	5406	5415	7932	7932					0.10005071559703538
EFALAPGPKKR	11	Unmodified	_EFALAPGPKKR_					0	0	0			REV__ENST00000459635.1_1_1:110033652-110034687:+|nuORF	REV__ENST00000459635.1_1_1:110033652-110034687:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	607.356222	1212.69789	2.3479	0.001426	-3.0081	-0.001827	-0.66021	-0.00040098	607.3538183547562	95.722	0.374	95.722	95.495	95.869	0	0.07444	-0.00060602	NaN	36.447	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	645430	+		6748	20760	5406	5415							0.10005071559703538
EFALAPGPKKR	11	Unmodified	_EFALAPGPKKR_					0	0	0			REV__ENST00000459635.1_1_1:110033652-110034687:+|nuORF	REV__ENST00000459635.1_1_1:110033652-110034687:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	607.356222	1212.69789	1.1217	0.00068127	-3.3092	-0.0020099	-2.1875	-0.0013286	607.3530489904159	97.522	1.2093	95.763	95.362	96.572	-1.7595	0.11511	-0.00097172	NaN	36.447	71	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207240	+		6749	20760	5406	5415							0.10005071559703538
EFALAPGPKKR	11	Unmodified	_EFALAPGPKKR_					0	0	0			REV__ENST00000459635.1_1_1:110033652-110034687:+|nuORF	REV__ENST00000459635.1_1_1:110033652-110034687:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	607.356222	1212.69789	0.90947	0.00055238	-3.5348	-0.0021469	-2.6253	-0.0015945	607.3532347496725	97.98	1.1646	95.602	95.267	96.431	-2.3786	-0.046072	-0.0012457	NaN	36.447	61	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181190	+		6750	20760	5406	5415							0.10005071559703538
EFALHEDLL	9	Unmodified	_EFALHEDLL_					0	0	0		nc|ENSG00000051009|Q8N612-2|FHIP1B;nc|ENSG00000051009|Q8N612-3|FHIP1B;ENSG00000051009|ENST00000449352|FHIP1B	nc|ENSG00000051009|Q8N612-2|FHIP1B	nc|ENSG00000051009|Q8N612-2|FHIP1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.800048828125	2	543.776939	1085.53933	2.38	0.0012942	-2.2324	-0.0012139	0.14762	8.0275E-05	543.7751162274852	94.717	0.85332	94.717	94.517	95.37	0					29	19	2	0	0	0	0.027448	1	10316	10316		44.117	0	1	280070			6751	14874	5407	5416	7933	7933					-2.2671392343909247E-05
EFAPIGKPF	9	Unmodified	_EFAPIGKPF_					0	0	0			REV__tr|A0A553SIW0|A0A553SIW0_NIACIFlagellarassemblyfactorFliWOS=NialliacirculansOX=1397GN=fliWPE=3SV=1	REV__tr|A0A553SIW0|A0A553SIW0_NIACIFlagellarassemblyfactorFliWOS=NialliacirculansOX=1397GN=fliWPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.7648010253906	2	503.273835	1004.53312	-0.90717	-0.00045656	-3.5451	-0.0017842	-4.4523	-0.0022407	503.27191438005633	94.005	0.76368	91.498	91.257	92.021	-2.5072					20	15	2	0	0	0	0.027462	1	8247	8247		35.618	0	1	82431	+		6752	29936	5408	5417	7934	7934					0.03103259419913229
EFAQEIITI	9	Unmodified	_EFAQEIITI_					0	0	0		nc|ENSG00000173681|A2AJT9-3|BCLAF3;nc|ENSG00000173681|A2AJT9-2|BCLAF3;ENSG00000173681|ENST00000379682|BCLAF3	nc|ENSG00000173681|A2AJT9-3|BCLAF3	nc|ENSG00000173681|A2AJT9-3|BCLAF3	MULTI-MSMS	OvCa99_classI_Rep5	1	532.2885131835938	2	532.28714	1062.55973	1.504	0.00080054	1.8194	0.00096845	3.3234	0.001769	532.2876458042824	98.353	0.79852	98.353	98.079	98.877	0					49	18	4	0	0	0	0.35444	1	10878	10878		56.721	1.2168	1	2647800			6753	7404	5409	5418	7935	7935					0.030949035205594555
EFATVWVVL	9	Unmodified	_EFATVWVVL_					0	0	0			REV__ENSG00000197405|ENST00000355085|C5AR1	REV__ENSG00000197405|ENST00000355085|C5AR1	MULTI-MSMS	OvCa99_classI_Rep5	1	532.2933349609375	2	532.294768	1062.57498	2.6436	0.0014072	-2.6898	-0.0014318	-0.046196	-2.459E-05	532.2933094836837	102.74	0.51002	102.74	102.5	103.01	0					29	11	3	0	0	0	0.17908	1	11456	11456		79.939	13.51	1	2306300	+		6754	22918	5410	5419	7936	7936					0.04619815108412695
EFATVWVVL	9	Unmodified	_EFATVWVVL_					0	0	0			REV__ENSG00000197405|ENST00000355085|C5AR1	REV__ENSG00000197405|ENST00000355085|C5AR1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	532.294768	1062.57498	0.70435	0.00037492	-6.2881	-0.0033471	-5.5837	-0.0029722	532.291959596605	104.3	0.15675	102.86	102.76	102.92	-1.4347	0.062794	-0.0034818	NaN	79.939	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6360.1	+		6755	22918	5410	5419							0.04619815108412695
EFCFFFFL	8	Unmodified	_EFCFFFFL_					0	0	0			REV__ENST00000331203.6_1_2:112945098-112945467:+|nuORF	REV__ENST00000331203.6_1_2:112945098-112945467:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.8156127929688	2	550.251514	1098.48848	-0.33573	-0.00018473	-3.7385	-0.0020571	-4.0742	-0.0022418	550.2493214607576	58.634	0.36631	58.634	58.446	58.812	0					14	8	2	0	0	0	0.028476	1	4987	4987		37.028	13.986	1	542480	+		6756	24533	5411	5420	7937	7937					-0.05682887717784979
EFDIRYQEL	9	Unmodified	_EFDIRYQEL_					0	0	0			REV__ENSG00000109436|ENST00000442267|TBC1D9	REV__ENSG00000109436|ENST00000442267|TBC1D9	MULTI-MSMS	OvCa99_classI_Rep5	1	606.8003540039062	2	606.798403	1211.58225	2.6571	0.0016123	-0.74177	-0.00045011	1.9153	0.0011622	606.7977668515916	100.93	1.1227	100.93	100.57	101.69	0					86	26	4	0	0	0	0.27001	1	11222	11222		66.429	0	1	1759200	+		6757	17928	5412	5421	7938	7938					-0.015074970818204747
EFDNPDTADL	10	Unmodified	_EFDNPDTADL_					0	0	0		nc|ENSG00000136161|O95199-2|RCBTB2;ENSG00000136161|ENST00000344532|RCBTB2	nc|ENSG00000136161|O95199-2|RCBTB2	nc|ENSG00000136161|O95199-2|RCBTB2	MULTI-MSMS	OvCa99_classI_Rep5	1	568.7420043945312	2	568.740751	1135.46695	1.5333	0.00087207	1.4083	0.00080098	2.9417	0.0016731	568.7413071873697	130.56	0.99968	130.56	130.25	131.25	0					41	20	4	0	0	0	0.58067	1	15148	15148		44.377	3.599	1	877080			6758	4468	5413	5422	7939	7939					-0.09536646003493843
EFELYEVR	8	Unmodified	_EFELYEVR_					0	0	0		ENSG00000178538|ENST00000317995|CA8;ENST00000529918.1_1_8:61178441-61193874:-|nuORF	ENSG00000178538|ENST00000317995|CA8	ENSG00000178538|ENST00000317995|CA8	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.8028564453125	2	542.769114	1083.52368	-0.66897	-0.0003631	0.62431	0.00033886	-0.044662	-2.4241E-05	542.76937543478	77.994	2.3091	76.205	75.519	77.828	-1.7894					72	44	3	0	0	0	0.028476	1	6643	6643		18.324	9.5021	1	100790			6759	7760	5414	5423	7940	7940					-0.014745536562713824
EFERYLNF	8	Unmodified	_EFERYLNF_					0	0	0		ENSG00000146857|ENST00000662584|STRA8	ENSG00000146857|ENST00000662584|STRA8	ENSG00000146857|ENST00000662584|STRA8	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.3599853515625	2	559.269281	1116.52401	4.0923	0.0022887	-2.3249	-0.0013002	1.7674	0.00098846	559.2680143621326	97.632	0.3419	97.632	97.438	97.78	0					14	7	3	0	0	0	0.028476	1	10740	10740		71.296	10.324	1	173140			6760	5312	5415	5424	7941	7941					-0.029591339364287705
EFFELTSEEKL	11	Unmodified	_EFFELTSEEKL_					0	0	0		ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	MSMS	OvCa99_classI_Rep5	1	457.8946838378906	3	457.894131	1370.66056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.036	1	76.036	75.536	76.536	0								0	0	0	0.19264	1	7602	7602		43.651	1.4082	1				6761	935	5416	5425	7942	7942					-0.00994109287239553
EFFFPLPLL	9	Unmodified	_EFFFPLPLL_					0	0	0		nc|ENSG00000138835|P49796-8|RGS3;nc|ENSG00000138835|P49796-7|RGS3	nc|ENSG00000138835|P49796-8|RGS3	nc|ENSG00000138835|P49796-8|RGS3	MULTI-MSMS	OvCa99_classI_Rep5	1	561.8215942382812	2	561.815336	1121.61612	3.8801	0.0021799	3.929	0.0022074	7.8091	0.0043873	561.8176141248028	97.466	0.51381	97.466	97.225	97.738	0					23	11	3	0	0	0	0.34496	1	10717	10717		57.811	8.3697	1	677620			6762	15049	5417	5426	7943	7943					0.060175761479058565
EFFLKLKDW	9	Unmodified	_EFFLKLKDW_					0	0	0			REV__ENSG00000134588|ENST00000511190|USP26	REV__ENSG00000134588|ENST00000511190|USP26	MULTI-MSMS	OvCa99_classI_Rep5	1	613.3355712890625	2	613.334424	1224.6543	2.6815	0.0016446	-4.0609	-0.0024907	-1.3795	-0.00084608	613.3317758313827	75.189	0.68081	75.189	74.92	75.601	0					31	16	4	0	0	0	0.3076	1	7472	7472		62.107	7.3311	1	1947100	+		6763	19213	5418	5427	7944	7944					0.05095462062581646
EFFLQGLSEK	10	Unmodified	_EFFLQGLSEK_					0	0	0		ENSG00000094661|ENST00000641398|OR1I1	ENSG00000094661|ENST00000641398|OR1I1	ENSG00000094661|ENST00000641398|OR1I1	MULTI-MSMS	OvCa99_classI_Rep5	1	599.3121337890625	2	599.311146	1196.60774	1.5919	0.00095407	0.29532	0.00017699	1.8873	0.0011311	599.311278981685	113.9	0.54164	113.9	113.66	114.2	0					26	11	3	0	0	0	0.59317	1	13012	13012		42.864	2.0861	1	1268500			6764	1911	5419	5428	7945	7945					0.017299774406183133
EFFLYILDV	9	Unmodified	_EFFLYILDV_					0	0	0			REV__ENST00000373115.4_1_10:73770493-73770862:+|nuORF	REV__ENST00000373115.4_1_10:73770493-73770862:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	579.810791015625	2	579.807708	1157.60086	1.7048	0.00098846	3.46	0.0020062	5.1648	0.0029946	579.8098368511306	90.554	1.1432	90.554	90.228	91.372	0					40	27	2	0	0	0	0.61208	1	9731	9731		30.504	2.6214	1	3000600	+		6765	25027	5420	5429	7946	7946					0.028366645600272022
EFGCICCCFLL	11	Unmodified	_EFGCICCCFLL_					0	0	0			REV__ENSG00000168813|ENST00000355898|ZNF507	REV__ENSG00000168813|ENST00000355898|ZNF507	MULTI-SECPEP	OvCa99_classI_Rep5	1	625.345458984375	2	625.757466	1249.50038	1.9974	0.0012499	-3.6282	-0.0022704	-1.6308	-0.0010205	625.7550749388165	78.216	0.57254	78.216	77.968	78.54	0					27	13	3	0	0	0	0.025909	1	7940	7940		26.693	1.2427	1	1204900	+		6766	21408	5421	5430	7947	7947					-0.11439098352775545
EFHGHAVNLL	10	Unmodified	_EFHGHAVNLL_					0	0	0		ENST00000527039.1_1_11:209766-212514:+|nuORF;nc|ENSG00000177963|Q9NPQ8-2|RIC8A;nc|ENSG00000177963|Q9NPQ8-4|RIC8A;ENSG00000177963|ENST00000526104|RIC8A;nc|ENSG00000177963|Q9NPQ8-3|RIC8A	ENST00000527039.1_1_11:209766-212514:+|nuORF	ENST00000527039.1_1_11:209766-212514:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.8406372070312	2	568.795998	1135.57744	1.5994	0.00090972	-4.1691	-0.0023714	-2.5697	-0.0014616	568.7936149073761	130.39	0.52376	130.39	130.1	130.63	0					15	10	2	0	0	0	0.026493	1	15123	15123		54.776	0	1	33629			6767	7722	5422	5431	7948	7948					0.015076635660989268
EFHSLRTVNL	10	Unmodified	_EFHSLRTVNL_					0	0	0			REV__nc|ENSG00000061938|Q07912|TNK2	REV__nc|ENSG00000061938|Q07912|TNK2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	609.3255004882812	2	608.327662	1214.64077	0.17517	0.00010656	2.412	0.0014673	2.5872	0.0015738	608.8286922461785	63.637	0.57539	60.162	59.964	60.539	-3.475					14	11	2	0	0	0	0.02678	1	4499	4499		24.519	0	1	14113	+		6768	16747	5423	5432	7949	7949					0.04203604283338791
EFHSPKEPS	9	Unmodified	_EFHSPKEPS_					0	0	0			REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B	REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.2809448242188	2	529.251089	1056.48762	0.44101	0.00023341	1.396	0.00073883	1.837	0.00097223	529.7542941061607	72.354	0.24295	72.354	72.208	72.45	0					7	5	2	0	0	0	0.027462	1	7031	7031		26.693	4.9906	1	244590	+		6769	22195	5424	5433	7950	7950					-0.03836010833151704
EFIADFRPVL	10	Unmodified	_EFIADFRPVL_					0	0	0		tr|A0A553SSZ6|A0A553SSZ6_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_04125PE=4SV=1	tr|A0A553SSZ6|A0A553SSZ6_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_04125PE=4SV=1	tr|A0A553SSZ6|A0A553SSZ6_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_04125PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	603.8287963867188	2	603.829506	1205.64446	0.086838	5.2435E-05	-4.0274	-0.0024319	-3.9406	-0.0023795	603.826881373554	73.969	1.4814	70.738	70.386	71.867	-3.2308					84	30	4	0	0	0	0.42082	1	5765	5765		44.117	8.4985	1	491020			6770	34440	5425	5434	7951	7951					0.04986274057182527
EFIKIVGLID	10	Unmodified	_EFIKIVGLID_					0	0	0		tr|A0A553SU84|A0A553SU84_NIACICheW-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06480PE=4SV=1	tr|A0A553SU84|A0A553SU84_NIACICheW-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06480PE=4SV=1	tr|A0A553SU84|A0A553SU84_NIACICheW-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06480PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.825927734375	2	573.842082	1145.66961	1.9862	0.0011397	-2.9397	-0.0016869	-0.95353	-0.00054717	573.8400882645052	77.229	0.58316	77.229	76.961	77.544	0					19	13	2	0	0	0	0.026734	1	7823	7823		31.53	4.8369	1	144550			6771	34580	5426	5435	7952	7952					0.10260328859749279
EFILLNKEP	9	Unmodified	_EFILLNKEP_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.8480834960938	2	551.810782	1101.60701	-0.12855	-7.0936E-05	3.7805	0.0020861	3.6519	0.0020152	551.8126315674807	102.22	0.84254	100.02	99.78	100.62	-2.1994					19	15	2	0	0	0	0.027418	1	9251	9251		75.043	6.2565	1	25899	+		6772	23506	5427	5436	7953	7953					0.06027182791558516
EFIPILNLL	9	Unmodified	_EFIPILNLL_					0	0	0			REV__ENSG00000175215|ENST00000398073|CTDSP2	REV__ENSG00000175215|ENST00000398073|CTDSP2	MULTI-MSMS	OvCa99_classI_Rep5	1	536.8275756835938	2	536.326068	1070.63758	2.1881	0.0011735	1.0042	0.00053858	3.1923	0.0017121	536.8269565826089	77.149	0.58176	77.149	76.841	77.422	0					27	13	4	0	0	0	0.40667	1	7772	7772		51.335	7.2187	1	1140100	+		6773	21881	5428	5437	7954	7954					0.10508961176606135
EFIVLTVLH	9	Unmodified	_EFIVLTVLH_					0	0	0		ENSG00000147234|ENST00000683843|FRMPD3;FRMPD3|p.P1368Afs*32|1|0.3|ENSG00000147234|chrX:107602041-107602062|GCCAGAGGCTGGCCCAGGCGTG/-|frameshift_variant	ENSG00000147234|ENST00000683843|FRMPD3	ENSG00000147234|ENST00000683843|FRMPD3	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.8145751953125	2	535.815867	1069.61718	2.7682	0.0014832	-2.8489	-0.0015265	-0.08074	-4.3262E-05	535.8144246127898	133.06	1.2255	131.53	131.16	132.39	-1.5244					77	24	5	0	0	0	0.58665	1	12823	12823		33.516	6.7195	1	119770			6774	5344	5429	5438	7955	7955					0.08515790516776178
EFKMGSKKD	9	Unmodified	_EFKMGSKKD_					0	0	0		tr|A0A7D7A290|A0A7D7A290_9CLOTDiscoidindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07485PE=3SV=1	tr|A0A7D7A290|A0A7D7A290_9CLOTDiscoidindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07485PE=3SV=1	tr|A0A7D7A290|A0A7D7A290_9CLOTDiscoidindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07485PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.27392578125	2	535.270967	1068.52738	-0.28778	-0.00015404	4.0718	0.0021795	3.784	0.0020255	535.273146822063	29.775	0.24832	29.775	29.636	29.885	0					6	4	2	0	0	0	0.027462	1	1087	1087		34.173	22.662	1	16407			6775	36067	5430	5439	7956	7956					-0.004142071540627512
EFKQEEPK	8	Unmodified	_EFKQEEPK_					0	0	0		ENSG00000130182|ENST00000576985|ZSCAN10;nc|ENSG00000130182|Q96SZ4-3|ZSCAN10;nc|ENSG00000130182|Q96SZ4|ZSCAN10	ENSG00000130182|ENST00000576985|ZSCAN10	ENSG00000130182|ENST00000576985|ZSCAN10	MULTI-MSMS	OvCa99_classI_Rep5	1	517.7618408203125	2	517.761289	1033.50803	-1.0541	-0.00054579	0.17491	9.0561E-05	-0.87923	-0.00045523	517.7613899450502	59.592	0.73869	59.592	59.377	60.116	0					53	18	4	0	0	0	0.27528	1	5137	5137		111.65	12.273	1	3534700			6776	3965	5431	5440	7957	7957					-0.007388401733351202
EFKQEEPK	8	Unmodified	_EFKQEEPK_					0	0	0		ENSG00000130182|ENST00000576985|ZSCAN10;nc|ENSG00000130182|Q96SZ4-3|ZSCAN10;nc|ENSG00000130182|Q96SZ4|ZSCAN10	ENSG00000130182|ENST00000576985|ZSCAN10	ENSG00000130182|ENST00000576985|ZSCAN10	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	517.761289	1033.50803	-0.66046	-0.00034196	-5.7147	-0.0029588	-6.3752	-0.0033008	517.7591131762266	63.005	0.48203	59.53	59.143	59.625	-3.475	-0.030927	-0.0057875	NaN	111.65	10	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13581			6777	3965	5431	5440							-0.007388401733351202
EFKRGLPLF	9	Unmodified	_EFKRGLPLF_					0	0	0		ENSG00000119912|ENST00000265986|IDE;nc|ENSG00000119912|P14735-2|IDE;ENST00000496903.5_1_10:94214203-94257457:-|nuORF	ENSG00000119912|ENST00000265986|IDE	ENSG00000119912|ENST00000265986|IDE	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8192749023438	2	553.821484	1105.62842	0.35055	0.00019414	-4.0787	-0.0022589	-3.7282	-0.0020647	553.8191095428485	32.261	1.2872	29.551	29.233	30.52	-2.7097					61	25	4	0	0	0	0.55588	1	1092	1092		37.159	3.6435	1	380430			6778	3400	5432	5441	7958	7958					0.07982612610953765
EFLCYFLL	8	Unmodified	_EFLCYFLL_					0	0	0			REV__ENSG00000168389|ENST00000372811|MFSD2A	REV__ENSG00000168389|ENST00000372811|MFSD2A	MULTI-MSMS	OvCa99_classI_Rep5	1	524.2670288085938	2	524.264622	1046.51469	1.9522	0.0010235	4.2816	0.0022447	6.2337	0.0032681	524.2667911950552	95.36	3.6241	95.36	93.426	97.05	0					147	85	2	0	0	0	0.68312	1	10274	10274		46.766	0.79419	1	839480	+		6779	21370	5433	5442	7959	7959					-0.00670618546314472
EFLDGAREYL	10	Unmodified	_EFLDGAREYL_					0	0	0			REV__IFT172|p.R1483Sfs*10|1|0.16|ENSG00000138002|chr2:27447902-27447903|-/ACTGCAAGCTCCGCTTCCCGGGTTCA|frameshift_variant	REV__IFT172|p.R1483Sfs*10|1|0.16|ENSG00000138002|chr2:27447902-27447903|-/ACTGCAAGCTCCGCTTCCCGGGTTCA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	606.8007202148438	2	606.798403	1211.58225	2.6571	0.0016123	-0.74177	-0.00045011	1.9153	0.0011622	606.7977668515916	100.93	1.1227	100.93	100.57	101.69	0					86	26	4	0	0	0	0.34811	1	11192	11192		75.043	6.2565	1	1759200	+		6780	19500	5434	5443	7960	7960					-0.015074970817977373
EFLDGAREYL	10	Unmodified	_EFLDGAREYL_					0	0	0			REV__IFT172|p.R1483Sfs*10|1|0.16|ENSG00000138002|chr2:27447902-27447903|-/ACTGCAAGCTCCGCTTCCCGGGTTCA|frameshift_variant	REV__IFT172|p.R1483Sfs*10|1|0.16|ENSG00000138002|chr2:27447902-27447903|-/ACTGCAAGCTCCGCTTCCCGGGTTCA|frameshift_variant	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	606.798403	1211.58225	2.6571	0.0016123	-0.74177	-0.00045011	1.9153	0.0011622	606.7977668515916	100.93	1.1227	100.93	100.57	101.69	0	0	0	NaN	75.043	86	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1759200	+		6781	19500	5434	5443							-0.015074970817977373
EFLEKNLF	8	Unmodified	_EFLEKNLF_					0	0	0		ENSG00000183655|ENST00000337975|KLHL25	ENSG00000183655|ENST00000337975|KLHL25	ENSG00000183655|ENST00000337975|KLHL25	MULTI-MSMS	OvCa99_classI_Rep5	1	520.2781372070312	2	520.276575	1038.5386	0.71333	0.00037113	1.0902	0.00056721	1.8035	0.00093834	520.2770143543554	145.55	1.535	145.55	145.18	146.72	0					69	31	4	0	0	0	0.53252	1	17050	17050		74.255	0	1	536440			6782	8093	5435	5444	7961	7961					0.020869382117098212
EFLGILLHL	9	Unmodified	_EFLGILLHL_					0	0	0			REV__HEATR1|p.G1956Wfs*9|1|0.04|ENSG00000119285|chr1:236555353-236555354|-/A|frameshift_variant	REV__HEATR1|p.G1956Wfs*9|1|0.04|ENSG00000119285|chr1:236555353-236555354|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	527.8176879882812	2	527.81841	1053.62227	0.15404	8.1304E-05	-0.13429	-7.0882E-05	0.019746	1.0422E-05	527.8180746611931	131.65	2.3091	131.42	131.15	133.46	-0.22696					124	46	4	0	0	0	0.42057	1	13027	13027		50.025	5.4935	1	610490	+		6783	18433	5436	5445	7962	7962					0.09760094379430484
EFLGSALLGV	10	Unmodified	_EFLGSALLGV_					0	0	0			REV__tr|A0A553SLP8|A0A553SLP8_NIACICupindomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21035PE=4SV=1	REV__tr|A0A553SLP8|A0A553SLP8_NIACICupindomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21035PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.8173828125	2	503.2844	1004.55425	2.1835	0.0010989	-2.742	-0.00138	-0.55852	-0.00028109	503.28287224672664	97.999	0.46658	97.999	97.823	98.29	0					13	10	2	0	0	0	0.026612	1	10796	10796		29.15	0	1	225320	+		6784	30248	5437	5446	7963	7963					0.052152247287722275
EFLIELMKK	9	Unmodified	_EFLIELMKK_					0	0	0			REV__ENSG00000117148|ENST00000375406|ACTL8	REV__ENSG00000117148|ENST00000375406|ACTL8	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.8220825195312	2	575.83066	1149.64677	1.3657	0.00078642	-2.4533	-0.0014127	-1.0876	-0.00062628	575.829131085325	112.39	0.27626	112.39	112.16	112.43	0					9	5	2	0	0	0	0.027418	1	12770	12770		82.241	15.811	1	234440	+		6785	18339	5438	5447	7964	7964					0.07792986470622054
EFLKVDYVNY	10	Unmodified	_EFLKVDYVNY_					0	0	0		ENSG00000184459|ENST00000300399|BPIFC	ENSG00000184459|ENST00000300399|BPIFC	ENSG00000184459|ENST00000300399|BPIFC	MULTI-MSMS	OvCa9_classI_Rep4_	4	645.3269653320312	2	645.324254	1288.63395	-0.5958	-0.00038449	3.9019	0.002518	3.3061	0.0021335	645.3267068965904	99.968	2.6534	97.643	97.263	99.917	-2.3253					142	52	6	0	0	0	0.65849	1	8998	8998		35.152	4.6484	1	2886900			6786	8160	5439	5448	7965	7965					0.0011824661210084741
EFLLHELD	8	Unmodified	_EFLLHELD_					0	0	0			REV__RNF168|p.L448Yfs*40|1|0.04|ENSG00000163961|chr3:196472192-196472192|A/-|frameshift_variant	REV__RNF168|p.L448Yfs*40|1|0.04|ENSG00000163961|chr3:196472192-196472192|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.7690734863281	2	508.258382	1014.50221	-1.0231	-0.00052001	1.6116	0.00081909	0.58844	0.00029908	508.2588587140387	99.701	0.46251	97.376	97.055	97.518	-2.3253					11	8	2	0	0	0	0.028476	1	8892	8892		47.916	3.3845	1	10333	+		6787	29336	5440	5449	7966	7966					-0.004459386850044211
EFLLSHWLL	9	Unmodified	_EFLLSHWLL_					0	0	0			REV__ENST00000273158.8_1_3:39432942-39433107:+|nuORF	REV__ENST00000273158.8_1_3:39432942-39433107:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	579.3195190429688	2	579.321317	1156.62808	1.1961	0.00069293	0.76164	0.00044124	1.9578	0.0011342	579.3217672287353	148.35	1.9114	148.35	147.98	149.89	0					61	38	3	0	0	0	0.52083	1	17364	17364		40.573	6.4001	1	177030	+		6788	24082	5441	5450	7967	7967					0.05603192891089748
EFLLWLLD	8	Unmodified	_EFLLWLLD_					0	0	0		ENSG00000103404|ENST00000219689|USP31;USP31|p.S289Ffs*3|1|0.08|ENSG00000103404|chr16:23106302-23106303|-/AT|frameshift_variant;ENST00000574408.5_1_17:9559773-9578252:+|nuORF;USP43|p.P814Sfs*46|1|0.22|ENSG00000154914|chr17:9728057-9728058|-/T|frameshift_variant;nc|ENSG00000154914|Q70EL4-4|USP43;ENSG00000154914|ENST00000285199|USP43	ENSG00000103404|ENST00000219689|USP31;USP43|p.P814Sfs*46|1|0.22|ENSG00000154914|chr17:9728057-9728058|-/T|frameshift_variant	ENSG00000103404|ENST00000219689|USP31	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.7684326171875	2	524.789318	1047.56408	1.7525	0.00091968	-2.7455	-0.0014408	-0.99307	-0.00052115	524.7874592520375	85.714	0.45169	85.714	85.502	85.954	0					17	10	2	0	0	0	0.028476	1	9034	9034		40.573	19.626	1	404440			6789	2315;5760	5442	5451	7968	7968					0.04220412734139245
EFLNHQRF	8	Unmodified	_EFLNHQRF_					0	0	0		ENSG00000261221|ENST00000568956|ZNF865	ENSG00000261221|ENST00000568956|ZNF865	ENSG00000261221|ENST00000568956|ZNF865	MULTI-SECPEP	OvCa9_classI_Rep3	3	546.3270874023438	2	545.775065	1089.53558	0.11454	6.2514E-05	0.73809	0.00040283	0.85263	0.00046535	545.7743392125559	105.1	0.83284	103.76	103.31	104.15	-1.3482					22	15	2	0	0	0	0.028476	1	7392	7392		31.955	0	1	41855			6790	9499	5443	5452	7969	7969					-0.005608921224165897
EFLNNRLVP	9	Unmodified	_EFLNNRLVP_					0	0	0			REV__nc|ENSG00000174485|Q7Z401|DENND4A	REV__nc|ENSG00000174485|Q7Z401|DENND4A	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.82568359375	2	551.306198	1100.59784	2.3001	0.001268	-3.7899	-0.0020894	-1.4899	-0.00082138	551.3043826290201	86.232	0.23631	86.232	86.153	86.389	0					7	5	2	0	0	0	0.027462	1	9072	9072		26.693	0	1	444580	+		6791	21836	5444	5453	7970	7970					0.051568342258860866
EFLQALHPD	9	Unmodified	_EFLQALHPD_					0	0	0		ENSG00000261949|ENST00000610896|GFY	ENSG00000261949|ENST00000610896|GFY	ENSG00000261949|ENST00000610896|GFY	MULTI-MSMS	OvCa99_classI_Rep5	1	535.267578125	2	535.269281	1068.52401	-0.33838	-0.00018113	-3.6721	-0.0019656	-4.0105	-0.0021467	535.2671798379705	33.508	0.58742	33.508	33.285	33.873	0					33	11	5	0	0	0	0.3076	1	1540	1540		62.107	3.8775	1	715000			6792	9506	5445	5454	7971	7971					-0.00751133936455517
EFLRKVNL	8	Unmodified	_EFLRKVNL_					0	0	0		tr|A0A7D6ZRE2|A0A7D6ZRE2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12335PE=4SV=1	tr|A0A7D6ZRE2|A0A7D6ZRE2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12335PE=4SV=1	tr|A0A7D6ZRE2|A0A7D6ZRE2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12335PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	509.8031921386719	2	509.805834	1017.59712	-1.3099	-0.00066782	-2.9211	-0.0014892	-4.231	-0.002157	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.7549	1	11278	11278		24.203	3.2558	1	99460			6793	35713	5446	5455	7972	7972					0.08902039576844345
EFLRVYLKE	9	Unmodified	_EFLRVYLKE_					0	0	0			REV__tr|A0A7D6VUV9|A0A7D6VUV9_9CLOTArsAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08560PE=3SV=1	REV__tr|A0A7D6VUV9|A0A7D6VUV9_9CLOTArsAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08560PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	599.7513427734375	2	598.837331	1195.66011	1.8185	0.001089	0.32382	0.00019391	2.1424	0.0012829	598.8370414035717	138.27	0.28958	138.27	138.02	138.31	0					7	5	2	0	0	0	0.027462	1	16134	16134		44.377	6.5657	1	22406	+		6794	31696	5447	5456	7973	7973					0.07010560574212832
EFLSPMFF	8	Unmodified	_EFLSPMFF_					0	0	0			REV__tr|A0A7D6VVN4|A0A7D6VVN4_9CLOTGlycogensynthaseOS=ClostridiumintestinaleOX=36845GN=glgAPE=3SV=1	REV__tr|A0A7D6VVN4|A0A7D6VVN4_9CLOTGlycogensynthaseOS=ClostridiumintestinaleOX=36845GN=glgAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	508.7381286621094	2	509.241147	1016.46774	1.5833	0.00080629	-2.4178	-0.0012313	-0.83451	-0.00042497	509.2399801613584	60.9	1.9539	57.832	56.783	58.737	-3.0685					78	52	2	0	0	0	0.75241	1	2051	2051		25.45	4.9683	1	24864	+		6795	31727	5448	5457	7974	7974					-0.03983478097450188
EFLSSPDREI	10	Unmodified	_EFLSSPDREI_					0	0	0		nc|nan|Q8IXR9-2|C12orf56;ENSG00000185306|ENST00000543942|C12orf56;XPOT-C12orf56|1|fusion;XPOT-C12orf56|2|fusion	nc|nan|Q8IXR9-2|C12orf56	nc|nan|Q8IXR9-2|C12orf56	MULTI-MSMS	OvCa99_classI_Rep5	1	596.799560546875	2	596.79586	1191.57717	1.9433	0.0011597	3.0779	0.0018369	5.0212	0.0029966	596.7975336873621	126.34	0.74035	126.34	126.09	126.83	0					30	15	3	0	0	0	0.37436	1	14619	14619		71.877	1.0613	1	351050			6796	8246	5449	5458	7975	7975					-0.010958009444266281
EFLVDHLSQ	9	Unmodified	_EFLVDHLSQ_					0	0	0			REV__ENSG00000068650|ENST00000375645|ATP11A	REV__ENSG00000068650|ENST00000375645|ATP11A	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7970581054688	2	544.274564	1086.53457	-0.11467	-6.2412E-05	-3.7286	-0.0020294	-3.8433	-0.0020918	544.2723532986099	69.19	0.37056	69.19	69.019	69.39	0					13	8	2	0	0	0	0.027447	1	6571	6571		47.657	0	1	468680	+		6797	16855	5450	5459	7976	7976					-0.005231512820046191
EFLYFAIL	8	Unmodified	_EFLYFAIL_					0	0	0			REV__tr|A0A553SI42|A0A553SI42_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_14135PE=4SV=1	REV__tr|A0A553SI42|A0A553SI42_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_14135PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.802490234375	2	508.278586	1014.54262	-0.096881	-4.9242E-05	3.1132	0.0015824	3.0163	0.0015331	508.2802986972138	60.538	0.70607	60.538	60.195	60.901	0					21	16	2	0	0	0	0.028476	1	5298	5298		37.028	1.8278	1	293530	+		6798	29861	5451	5460	7977	7977					0.03593027705437635
EFLYRIDQP	9	Unmodified	_EFLYRIDQP_					0	0	0		nc|nan|Q9H0W9-4|C11orf54;nc|nan|Q9H0W9-3|C11orf54;nc|nan|Q9H0W9-2|C11orf54;ENSG00000182919|ENST00000354421|C11orf54	nc|nan|Q9H0W9-4|C11orf54	nc|nan|Q9H0W9-4|C11orf54	MULTI-SECPEP	OvCa9_classI_Rep4_	4	591.3191528320312	2	590.803488	1179.59242	-1.4094	-0.00083269	-0.91744	-0.00054203	-2.3269	-0.0013747	590.8041360989174	107.15	0.92683	105.27	104.91	105.83	-1.8785					37	17	4	0	0	0	0.027462	1	9789	9789		29.17	0	1	55022			6799	8039	5452	5461	7978	7978					0.009811106434199246
EFMDAVCMQL	10	Carbamidomethyl (C),2 Oxidation (M)	_EFM(Oxidation (M))DAVC(Carbamidomethyl (C))M(Oxidation (M))QL_	EFMDAVC(1)MQL	EFM(1)DAVCM(1)QL	EFMDAVC(41)MQL	EFM(41)DAVCM(41)QL	0	1	2		ENSG00000180902|ENST00000321264|D2HGDH;ENST00000436747.5_1_2:242689322-242694075:+|nuORF	ENSG00000180902|ENST00000321264|D2HGDH	ENSG00000180902|ENST00000321264|D2HGDH	MULTI-MSMS	OvCa99_classI_Rep5	1	638.2581787109375	2	638.256342	1274.49813	2.0581	0.0013136	0.69366	0.00044273	2.7518	0.0017563	638.2564167940827	135.9	0.47086	135.9	135.69	136.16	0					20	9	3	0	0	0	0.6104	1	15842	15842		40.778	8.0276	1	217660			6800	7897	5453	5462	7979	7979	76	239;240			-0.12813855556873932
EFMFRLYDSD	10	Unmodified	_EFMFRLYDSD_					0	0	0		DGKG|p.F695Sfs*16|1|0.12|ENSG00000058866|chr3:186188213-186188213|A/-|frameshift_variant;ENST00000480809.5_1_3:185925300-186038248:-|nuORF;nc|ENSG00000058866|P49619-3|DGKG;nc|ENSG00000058866|P49619-2|DGKG;ENSG00000058866|ENST00000265022|DGKG	DGKG|p.F695Sfs*16|1|0.12|ENSG00000058866|chr3:186188213-186188213|A/-|frameshift_variant;nc|ENSG00000058866|P49619-3|DGKG	DGKG|p.F695Sfs*16|1|0.12|ENSG00000058866|chr3:186188213-186188213|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.29681396484375	3	441.528906	1321.56489	0.49828	0.00022001	2.0766	0.00091689	2.5749	0.0011369	441.52981052405715	68.303	0.39249	64.813	64.671	65.064	-3.4902					13	7	2	0	0	0	0.027165	1	5057	5057		32.751	6.6872	1	28130			6801	732;1250	5454	5463	7980	7980					-0.08303160679110988
EFMSFDGLG	9	Unmodified	_EFMSFDGLG_					0	0	0		ENST00000537350.5_2_1:167674023-167674290:+|nuORF	ENST00000537350.5_2_1:167674023-167674290:+|nuORF	ENST00000537350.5_2_1:167674023-167674290:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.759765625	2	501.715493	1001.41643	-0.15242	-7.6473E-05	-2.5058	-0.0012572	-2.6582	-0.0013337	501.7135637230451	60.16	0.68794	56.73	56.456	57.144	-3.43					16	13	2	0	0	0	0.027462	1	4061	4061		23.042	10.083	1	17870			6802	13405	5455	5464	7981	7981					-0.08421846862142957
EFMTMGKAKYY	11	Unmodified	_EFMTMGKAKYY_					0	0	0			REV__tr|A0A553SIS5|A0A553SIS5_NIACIPhosphoglucomutaseOS=NialliacirculansOX=1397GN=CEQ21_15425PE=3SV=1	REV__tr|A0A553SIS5|A0A553SIS5_NIACIPhosphoglucomutaseOS=NialliacirculansOX=1397GN=CEQ21_15425PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.75177001953125	3	456.882403	1367.62538	-0.65929	-0.00030122	0.049865	2.2782E-05	-0.60943	-0.00027844	456.8823036939533	64.308	0.66104	64.308	64.011	64.672	0					31	15	3	0	0	0	0.025995	1	5886	5886		29.551	0.97402	1	620890	+		6803	29923	5456	5465	7982	7982					-0.04372766620372204
EFNERTKDI	9	Unmodified	_EFNERTKDI_					0	0	0		nc|ENSG00000174547|Q9Y3B7-3|MRPL11;ENSG00000174547|ENST00000310999|MRPL11;ENST00000524576.5_1_11:66203480-66233392:-|nuORF;nc|ENSG00000174547|Q9Y3B7-2|MRPL11	nc|ENSG00000174547|Q9Y3B7-3|MRPL11	nc|ENSG00000174547|Q9Y3B7-3|MRPL11	MULTI-MSMS	OvCa99_classI_Rep5	1	576.2952880859375	2	576.288202	1150.56185	-2.1234	-0.0012237	3.6701	0.002115	1.5466	0.00089131	576.2900152469781	103.79	0.76396	103.79	103.39	104.15	0					55	17	5	0	0	0	0.16562	1	11605	11605		82.241	7.9855	1	1860200			6804	7474	5457	5466	7983	7983					-0.007406677416156526
EFNERTKDI	9	Unmodified	_EFNERTKDI_					0	0	0		nc|ENSG00000174547|Q9Y3B7-3|MRPL11;ENSG00000174547|ENST00000310999|MRPL11;ENST00000524576.5_1_11:66203480-66233392:-|nuORF;nc|ENSG00000174547|Q9Y3B7-2|MRPL11	nc|ENSG00000174547|Q9Y3B7-3|MRPL11	nc|ENSG00000174547|Q9Y3B7-3|MRPL11	MULTI-MATCH	OvCa9_classI_Rep2	2		2	576.288202	1150.56185	-1.2688	-0.00073117	4.7589	0.0027425	3.4902	0.0020113	576.2905311112067	104.48	1.0887	103.9	103.67	104.76	-0.57639	0.062693	0.00077765	NaN	82.241	36	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62276			6805	7474	5457	5466							-0.007406677416156526
EFNERTKDI	9	Unmodified	_EFNERTKDI_					0	0	0		nc|ENSG00000174547|Q9Y3B7-3|MRPL11;ENSG00000174547|ENST00000310999|MRPL11;ENST00000524576.5_1_11:66203480-66233392:-|nuORF;nc|ENSG00000174547|Q9Y3B7-2|MRPL11	nc|ENSG00000174547|Q9Y3B7-3|MRPL11	nc|ENSG00000174547|Q9Y3B7-3|MRPL11	MULTI-MATCH	OvCa9_classI_Rep3	3		2	576.288202	1150.56185	-0.32911	-0.00018966	3.8479	0.0022175	3.5188	0.0020278	576.2899315114634	105.19	0.67674	103.84	103.62	104.3	-1.3482	-0.00077482	-0.00027237	NaN	82.241	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78693			6806	7474	5457	5466							-0.007406677416156526
EFNERTKDI	9	Unmodified	_EFNERTKDI_					0	0	0		nc|ENSG00000174547|Q9Y3B7-3|MRPL11;ENSG00000174547|ENST00000310999|MRPL11;ENST00000524576.5_1_11:66203480-66233392:-|nuORF;nc|ENSG00000174547|Q9Y3B7-2|MRPL11	nc|ENSG00000174547|Q9Y3B7-3|MRPL11	nc|ENSG00000174547|Q9Y3B7-3|MRPL11	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	576.288202	1150.56185	-0.73112	-0.00042133	4.6536	0.0026818	3.9225	0.0022605	576.2903865683938	105.84	0.66001	103.82	103.55	104.21	-2.0161	-0.016028	0.00065631	NaN	82.241	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64571			6807	7474	5457	5466							-0.007406677416156526
EFNIINVF	8	Unmodified	_EFNIINVF_					0	0	0			REV__tr|A0A7D6ZFA6|A0A7D6ZFA6_9CLOTChemotaxisproteinCheCOS=ClostridiumintestinaleOX=36845GN=HZF06_17055PE=4SV=1	REV__tr|A0A7D6ZFA6|A0A7D6ZFA6_9CLOTChemotaxisproteinCheCOS=ClostridiumintestinaleOX=36845GN=HZF06_17055PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.7784118652344	2	498.263468	994.512382	0.32192	0.0001604	-4.1468	-0.0020662	-3.8249	-0.0019058	498.2611117756913	67.155	1.0372	63.665	63.148	64.186	-3.4902					39	20	3	0	0	0	0.028476	1	4945	4945		42.474	1.9018	1	55561	+		6808	31963	5458	5467	7984	7984					0.014906690402426648
EFNKNILEL	9	Unmodified	_EFNKNILEL_					0	0	0			REV__nc|ENSG00000106692|O75072-2|FKTN	REV__nc|ENSG00000106692|O75072-2|FKTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.332763671875	2	560.305864	1118.59717	2.5567	0.0014326	0.14404	8.0707E-05	2.7008	0.0015133	560.3059171524778	120.27	0.56181	120.27	120	120.56	0					25	13	3	0	0	0	0.027304	1	13851	13851		98.629	16.324	1	551230	+		6809	17821	5459	5468	7985	7985					0.04261994786179457
EFNLSTFYF	9	Unmodified	_EFNLSTFYF_					0	0	0			REV__tr|A0A7D7A5V4|A0A7D7A5V4_9CLOTEndosporegerminationpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07610PE=3SV=1	REV__tr|A0A7D7A5V4|A0A7D7A5V4_9CLOTEndosporegerminationpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07610PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	584.2734375	2	584.27149	1166.52843	3.2528	0.0019005	-1.8157	-0.0010609	1.4371	0.00083966	584.2703251014149	97.539	0.4716	97.539	97.309	97.78	0					26	10	4	0	0	0	0.12515	1	10730	10730		90.37	21.524	1	881310	+		6810	32644	5460	5469	7986	7986					-0.0481766951352256
EFNRIDLPVL	10	Unmodified	_EFNRIDLPVL_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5;DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant;DNAH5|p.M2992Ifs*5|1|0.15|ENSG00000039139|chr5:13777331-13777332|-/AA|frameshift_variant;DNAH5|p.M2992Sfs*34|1|0.14|ENSG00000039139|chr5:13777333-13777334|-/ACAGATAGATAGATAGACAGACAGA|frameshift_variant	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	OvCa9_classI_Rep4_	4	608.3411865234375	2	608.340238	1214.66592	-0.57424	-0.00034933	0.45862	0.000279	-0.11562	-7.0335E-05	608.3403172861514	118.35	0.89501	117.01	116.68	117.58	-1.3444					42	16	4	0	0	0	0.6349	1	11081	11081		37.812	0.65241	1	126720			6811	1103	5461	5470	7987	7987					0.06717659085893501
EFNRIDLPVL	10	Unmodified	_EFNRIDLPVL_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5;DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant;DNAH5|p.M2992Ifs*5|1|0.15|ENSG00000039139|chr5:13777331-13777332|-/AA|frameshift_variant;DNAH5|p.M2992Sfs*34|1|0.14|ENSG00000039139|chr5:13777333-13777334|-/ACAGATAGATAGATAGACAGACAGA|frameshift_variant	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	608.340238	1214.66592	-1.5661	-0.00095273	1.3269	0.00080723	-0.23917	-0.0001455	608.3409999443197	117.21	0.89173	117.08	116.86	117.76	-0.12869	0.034509	0.0022046	NaN	37.812	49	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114760			6812	1103	5461	5470							0.06717659085893501
EFNRIDLPVL	10	Unmodified	_EFNRIDLPVL_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5;DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant;DNAH5|p.M2992Ifs*5|1|0.15|ENSG00000039139|chr5:13777331-13777332|-/AA|frameshift_variant;DNAH5|p.M2992Sfs*34|1|0.14|ENSG00000039139|chr5:13777333-13777334|-/ACAGATAGATAGATAGACAGACAGA|frameshift_variant	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	608.340238	1214.66592	1.2488	0.00075969	-1.4753	-0.00089747	-0.2265	-0.00013779	608.3391939958148	118.09	0.94173	117.06	116.74	117.68	-1.0324	0.0078246	-0.0012049	NaN	37.812	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132350			6813	1103	5461	5470							0.06717659085893501
EFPALDIKL	9	Unmodified	_EFPALDIKL_					0	0	0		ENSG00000100167|ENST00000644076|SEPTIN3	ENSG00000100167|ENST00000644076|SEPTIN3	ENSG00000100167|ENST00000644076|SEPTIN3	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.27197265625	2	523.30005	1044.58555	-0.8506	-0.00044512	-3.2901	-0.0017217	-4.1407	-0.0021668	523.2982314384218	120.48	0.78931	120.31	120.14	120.93	-0.17138					27	15	2	0	0	0	0.027462	1	11635	11635		49.442	13.823	1	49034			6814	2020	5462	5471	7988	7988					0.06503797762843533
EFPAREMLL	9	Unmodified	_EFPAREMLL_					0	0	0		ENSG00000113211|ENST00000231136|PCDHB6	ENSG00000113211|ENST00000231136|PCDHB6	ENSG00000113211|ENST00000231136|PCDHB6	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.824951171875	2	553.289159	1104.56377	3.6676	0.0020292	-2.1434	-0.0011859	1.5241	0.00084327	553.2881280578953	88.323	0.63315	88.323	87.962	88.595	0					23	14	2	0	0	0	0.027462	1	9355	9355		47.657	5.2612	1	558760			6815	2954	5463	5472	7989	7989					0.015666697426240717
EFPEKQELH	9	Unmodified	_EFPEKQELH_					0	0	0		ENSG00000160445|ENST00000291900|ZER1	ENSG00000160445|ENST00000291900|ZER1	ENSG00000160445|ENST00000291900|ZER1	MULTI-MSMS	OvCa99_classI_Rep5	1	578.7894897460938	2	578.785296	1155.55604	1.3855	0.00080189	4.177	0.0024176	5.5625	0.0032195	578.7874595301851	125.36	0.80071	125.36	125.14	125.95	0					41	19	3	0	0	0	0.42676	1	14494	14494		49.442	3.4693	1	658390			6816	6066	5464	5473	7990	7990					-0.01551766253282949
EFPIEYKLAL	10	Unmodified	_EFPIEYKLAL_					0	0	0			REV__tr|A0A553SIG4|A0A553SIG4_NIACIAllantoinaseOS=NialliacirculansOX=1397GN=allBPE=3SV=1	REV__tr|A0A553SIG4|A0A553SIG4_NIACIAllantoinaseOS=NialliacirculansOX=1397GN=allBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	408.7277526855469	3	408.228785	1221.66453	0.98102	0.00040048	-1.4496	-0.00059177	-0.46858	-0.00019129	408.5624620199866	48.224	0.51133	45.116	44.888	45.399	-3.1077					18	9	3	0	0	0	0.026931	1	2632	2632		37.812	23.674	1	32313	+		6817	29891	5465	5474	7991	7991					0.06256024997151144
EFPIEYKLAL	10	Unmodified	_EFPIEYKLAL_					0	0	0			REV__tr|A0A553SIG4|A0A553SIG4_NIACIAllantoinaseOS=NialliacirculansOX=1397GN=allBPE=3SV=1	REV__tr|A0A553SIG4|A0A553SIG4_NIACIAllantoinaseOS=NialliacirculansOX=1397GN=allBPE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		3	408.228785	1221.66453	1.2987	0.00053018	-4.2285	-0.0017262	-2.9298	-0.001196	408.22702341494266	45.145	0.48153	45.145	44.932	45.413	0	0.014411	-0.00096769	NaN	17.468	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220460	+		6818	29891	5465	5474							0.06256024997151144
EFPILFPCK	9	Unmodified	_EFPILFPCK_					0	0	0			REV__ENSG00000092148|ENST00000399332|HECTD1	REV__ENSG00000092148|ENST00000399332|HECTD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.7999267578125	2	547.291171	1092.56779	2.9912	0.001637	-1.9822	-0.0010848	1.009	0.00055221	547.291318579995	102.53	0.38295	102.53	102.38	102.76	0					14	8	2	0	0	0	0.027448	1	11438	11438		53.351	7.3792	1	261280	+		6819	17263	5466	5475	7992	7992					0.025207592363358344
EFPILFPCK	9	Unmodified	_EFPILFPCK_					0	0	0			REV__ENSG00000092148|ENST00000399332|HECTD1	REV__ENSG00000092148|ENST00000399332|HECTD1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	547.291171	1092.56779	-0.76884	-0.00042078	0.31508	0.00017244	-0.45376	-0.00024834	547.2918068917763	103.41	0.54317	102.73	102.53	103.07	-0.68459	0.03081	0.00096326	NaN	53.351	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17110	+		6820	17263	5466	5475							0.025207592363358344
EFPILFPCK	9	Unmodified	_EFPILFPCK_					0	0	0			REV__ENSG00000092148|ENST00000399332|HECTD1	REV__ENSG00000092148|ENST00000399332|HECTD1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	547.291171	1092.56779	-0.15148	-8.2903E-05	-0.49091	-0.00026867	-0.64239	-0.00035158	547.2912245882844	104.27	0.57268	102.83	102.55	103.12	-1.4347	0.13733	8.1027E-05	NaN	53.351	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13706	+		6821	17263	5466	5475							0.025207592363358344
EFPPGTPRF	9	Unmodified	_EFPPGTPRF_					0	0	0		PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant;PRKDC|p.P3973Afs*40|1|0.09|ENSG00000253729|chr8:47777811-47777812|-/C|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC;PRKDC|p.K2221Nfs*18|1|0.7|ENSG00000253729|chr8:47855320-47855320|T/-|frameshift_variant	PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant	PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	524.2691650390625	2	524.266542	1046.51853	1.9522	0.0010235	0.61945	0.00032475	2.5716	0.0013482	524.2667911950552	95.36	3.6241	95.36	93.426	97.05	0					147	85	2	0	0	0	0.56889	1	10363	10363		35.618	0	1	839480			6822	9437	5467	5476	7993	7993					-0.0028681272824542248
EFPRPFLP	8	Unmodified	_EFPRPFLP_					0	0	0		ENSG00000196620|ENST00000338206|UGT2B15;ENSG00000197888|ENST00000317746|UGT2B17	ENSG00000196620|ENST00000338206|UGT2B15	ENSG00000196620|ENST00000338206|UGT2B15	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.7751770019531	2	501.774003	1001.53345	1.3991	0.00070203	4.3962	0.0022059	5.7954	0.002908	502.2777636933527	149.18	0.34752	149.18	149.01	149.36	0					10	6	2	0	0	0	0.028476	1	17455	17455		26.796	0	1	19781			6823	8636	5468	5477	7994	7994					0.0327467913974715
EFPSSFESL	9	Unmodified	_EFPSSFESL_					0	0	0		nc|ENSG00000182208|Q70IA6|MOB2;ENSG00000182208|ENST00000329957|MOB2	nc|ENSG00000182208|Q70IA6|MOB2	nc|ENSG00000182208|Q70IA6|MOB2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.2739868164062	2	521.740022	1041.46549	-1.5544	-0.000811	-2.9762	-0.0015528	-4.5306	-0.0023638	521.7390346624727	73.048	0.58138	69.652	69.446	70.027	-3.3961					17	11	2	0	0	0	0.027462	1	5681	5681		29.15	0.89528	1	28548			6824	7980	5469	5478	7995	7995					-0.05358235301559944
EFQCEGHESH	10	Unmodified	_EFQCEGHESH_					0	0	0		ENSG00000177575|ENST00000432237|CD163;nc|ENSG00000177575|Q86VB7|CD163;nc|ENSG00000177575|Q86VB7-2|CD163;ENST00000537044.1_1_12:7633616-7656286:-|nuORF;nc|ENSG00000177575|Q86VB7-4|CD163	ENSG00000177575|ENST00000432237|CD163	ENSG00000177575|ENST00000432237|CD163	MULTI-SECPEP	OvCa99_classI_Rep5	1	601.833251953125	2	601.730194	1201.44584	2.772	0.001668	-2.8295	-0.0017026	-0.057445	-3.4566E-05	601.7284570253967	75.561	0.7069	75.561	75.369	76.076	0					32	17	2	0	0	0	0.027198	1	7514	7514		19.997	0	1	395820			6825	7695	5470	5479	7996	7996					-0.14682934583970564
EFQILKAEL	9	Unmodified	_EFQILKAEL_					0	0	0		nc|ENSG00000133131|Q8TE76-2|MORC4;nc|ENSG00000133131|Q8TE76-3|MORC4;ENSG00000133131|ENST00000355610|MORC4;ENST00000478924.1_1_X:106185151-106185807:-|nuORF	nc|ENSG00000133131|Q8TE76-2|MORC4	nc|ENSG00000133131|Q8TE76-2|MORC4	MULTI-MSMS	OvCa99_classI_Rep5	1	545.816162109375	2	545.810782	1089.60701	1.9685	0.0010744	0.30757	0.00016787	2.2761	0.0012423	545.8106915903809	85.084	0.86313	85.084	84.8	85.663	0					50	20	3	0	0	0	0.2422	1	8948	8948		69.628	2.134	1	1594600			6826	4207	5471	5480	7997	7997					0.0657918279155183
EFQQVLIR	8	Unmodified	_EFQQVLIR_					0	0	0			REV__nc|ENSG00000139496|Q9BVL2-2|NUP58	REV__nc|ENSG00000139496|Q9BVL2-2|NUP58	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.7702026367188	2	516.795466	1031.57638	-0.31912	-0.00016492	3.3117	0.0017115	2.9926	0.0015466	516.7971180267734	60.806	0.72176	60.806	60.434	61.156	0					29	16	2	0	0	0	0.028476	1	5280	5280		24.203	0	1	372870	+		6827	19613	5472	5481	7998	7998					0.06185449197187154
EFQTKGKLI	9	Unmodified	_EFQTKGKLI_					0	0	0			REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.3579652635712427|0.3175433071941228|2.1|429.0|14|1|sense	REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.3579652635712427|0.3175433071941228|2.1|429.0|14|1|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	532.3126220703125	2	532.310949	1062.60735	1.2587	0.00067001	1.0678	0.00056839	2.3265	0.0012384	532.3114177216976	83.511	0.80219	83.511	83.249	84.051	0					38	18	3	0	0	0	0.066102	1	8693	8693		109.48	21.782	1	4137000	+		6828	28427	5473	5482	7999	7999					0.0785460251142922
EFQTKGKLI	9	Unmodified	_EFQTKGKLI_					0	0	0			REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.3579652635712427|0.3175433071941228|2.1|429.0|14|1|sense	REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.3579652635712427|0.3175433071941228|2.1|429.0|14|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.7910766601562	2	532.310949	1062.60735	1.2587	0.00067001	1.0678	0.00056839	2.3265	0.0012384	532.3114177216976	83.511	0.80219	83.511	83.249	84.051	0					38	18	3	0	0	0	0.027462	1	8705	8705		63.534	25.722	1	4137000	+		6829	28427	5473	5482	8000	8000					0.0785460251142922
EFRAAMVKAH	10	Unmodified	_EFRAAMVKAH_					0	0	0		ENSG00000278685|ENST00000615129|IQCA1L	ENSG00000278685|ENST00000615129|IQCA1L	ENSG00000278685|ENST00000615129|IQCA1L	MULTI-MSMS	OvCa99_classI_Rep5	1	580.307861328125	2	580.305675	1158.5968	0.35419	0.00020554	-0.33693	-0.00019552	0.017262	1.0017E-05	580.3053463345091	159.19	0.4839	159.19	158.99	159.47	0					20	9	3	0	0	0	0.50656	1	18666	18666		53.351	5.6941	1	61886			6830	9592	5474	5483	8001	8001					0.02384296585341872
EFRKTGLL	8	Unmodified	_EFRKTGLL_					0	0	0		tr|A0A7D6VP38|A0A7D6VP38_9CLOTUvrB/UvrCmotif-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21485PE=4SV=1	tr|A0A7D6VP38|A0A7D6VP38_9CLOTUvrB/UvrCmotif-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21485PE=4SV=1	tr|A0A7D6VP38|A0A7D6VP38_9CLOTUvrB/UvrCmotif-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21485PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.2854919433594	2	482.284734	962.554916	0.4153	0.00020029	-0.83845	-0.00040437	-0.42314	-0.00020407	482.28428570779477	89.843	3.2427	87.268	86.851	90.093	-2.575					120	63	4	0	0	0	0.7224	1	7766	7766		38.806	3.1879	1	1527800			6831	34747	5475	5484	8002	8002					0.07214064168476853
EFRTIYLN	8	Unmodified	_EFRTIYLN_					0	0	0		ENST00000527141.5_1_11:66331945-66334941:-|nuORF;ENSG00000174080|ENST00000310325|CTSF	ENST00000527141.5_1_11:66331945-66334941:-|nuORF	ENST00000527141.5_1_11:66331945-66334941:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	528.2781982421875	2	528.279649	1054.54475	-0.84284	-0.00044526	-3.162	-0.0016704	-4.0048	-0.0021157	528.2777903129592	46.35	1.9317	43.64	43.349	45.281	-2.7097					82	38	3	0	0	0	0.68714	1	2765	2765		45.952	1.8352	1	241450			6832	7436	5476	5485	8003	8003					0.0196545644323578
EFRVTFDTNI	10	Unmodified	_EFRVTFDTNI_					0	0	0		tr|A0A7D6ZHF5|A0A7D6ZHF5_9CLOTPolyphosphatepolymerasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02760PE=4SV=1	tr|A0A7D6ZHF5|A0A7D6ZHF5_9CLOTPolyphosphatepolymerasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02760PE=4SV=1	tr|A0A7D6ZHF5|A0A7D6ZHF5_9CLOTPolyphosphatepolymerasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02760PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	620.376953125	2	621.311677	1240.6088	-1.4735	-0.00091548	0.54283	0.00033726	-0.93063	-0.00057821	621.3119672960315	70.141	0.44547	70.141	69.84	70.286	0					23	10	3	0	0	0	0.026771	1	6701	6701		37.508	22.643	1	671450			6833	35576	5477	5486	8004	8004					-0.0018780819045787212
EFSEYHLI	8	Unmodified	_EFSEYHLI_					0	0	0			REV__ENST00000505328.1_1_4:108991620-108999477:-|nuORF	REV__ENST00000505328.1_1_4:108991620-108999477:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.8222045898438	2	519.250557	1036.48656	1.2333	0.0006404	-1.2025	-0.00062438	0.030845	1.6016E-05	519.2498828855972	135.6	0.5155	135.6	135.36	135.88	0					14	10	2	0	0	0	0.028476	1	15781	15781		54.765	5.3231	1	71464	+		6834	26877	5478	5487	8005	8005					-0.03022225202039408
EFSHTGVEPY	10	Unmodified	_EFSHTGVEPY_					0	0	0		TRPM6|p.K1631E|1|0.4|ENSG00000119121|chr9:74755368-74755368|T/C|missense_variant	TRPM6|p.K1631E|1|0.4|ENSG00000119121|chr9:74755368-74755368|T/C|missense_variant	TRPM6|p.K1631E|1|0.4|ENSG00000119121|chr9:74755368-74755368|T/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.3071899414062	2	583.261653	1164.50875	0.81423	0.00047491	-0.29701	-0.00017323	0.51722	0.00030168	583.7640285068487	80.948	0.54553	80.948	80.702	81.248	0					18	12	3	0	0	0	0.026915	1	8332	8332		27.882	0	1	217850			6835	36284	5479	5488	8006	8006					-0.06692045524278001
EFSPIDSTVDV	11	Unmodified	_EFSPIDSTVDV_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;nc|ENSG00000157423|Q4G0P3-2|HYDIN;ENST00000378856.8_2_16:70845233-70899022:-|nuORF	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-MSMS	OvCa99_classI_Rep5	1	604.787109375	2	604.787701	1207.56085	2.5506	0.0015426	0.16308	9.8629E-05	2.7137	0.0016412	604.7861112646349	120.86	1.0847	120.86	120.44	121.52	0					73	24	5	0	0	0	0.60323	1	13871	13871		44.377	1.5129	1	502530			6836	5891	5480	5489	8007	8007					-0.034629269011929864
EFSRTDKLK	9	Unmodified	_EFSRTDKLK_					0	0	0		ENSG00000197816|ENST00000529487|CCDC180;nc|ENSG00000197816|Q9P1Z9|CCDC180;CCDC180|p.H1510Ffs*11|1|0.03|ENSG00000197816|chr9:97370685-97370686|-/TT|frameshift_variant;ENST00000375206.6_1_9:100053158-100139173:+|nuORF;ENST00000529787.2_1_9:100053158-100088872:+|nuORF;ENST00000494917.6_1_9:100069637-100105846:+|nuORF;ENST00000460482.6_1_9:100070037-100107975:+|nuORF	ENSG00000197816|ENST00000529487|CCDC180	ENSG00000197816|ENST00000529487|CCDC180	MULTI-MSMS	OvCa99_classI_Rep5	1	562.8099975585938	2	562.308938	1122.60332	2.1988	0.0012364	-0.96815	-0.0005444	1.2307	0.00069201	562.310393803367	111.06	0.97951	111.06	110.63	111.6	0					51	21	3	0	0	0	0.21231	1	12640	12640		74.255	10.048	1	1146800			6837	8751	5481	5490	8008	8008					0.046925130176987295
EFSRVRFL	8	Unmodified	_EFSRVRFL_					0	0	0			REV__RAG1|p.L402Hfs*29|1|0.03|ENSG00000166349|chr11:36574508-36574509|-/ACAGGTTTAGAGTTCCGTGTTT|frameshift_variant	REV__RAG1|p.L402Hfs*29|1|0.03|ENSG00000166349|chr11:36574508-36574509|-/ACAGGTTTAGAGTTCCGTGTTT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.3101196289062	2	527.295633	1052.57671	1.5935	0.00084025	-1.9415	-0.0010238	-0.34802	-0.00018351	527.2937300437718	82.995	0.38052	82.995	82.824	83.204	0					12	8	3	0	0	0	0.028476	1	8609	8609		102.77	39.795	1	162980	+		6838	21181	5482	5491	8009	8009					0.052528689170458165
EFTFFPSQT	9	Unmodified	_EFTFFPSQT_					0	0	0			REV__nc|ENSG00000059915|A5PKW4-2|PSD	REV__nc|ENSG00000059915|A5PKW4-2|PSD	MULTI-SECPEP	OvCa9_classI_Rep3	3	552.302001953125	2	552.25584	1102.49713	-0.74998	-0.00041418	3.2533	0.0017966	2.5033	0.0013825	552.2570774114139	102.86	0.20827	101.34	101.21	101.41	-1.5211					5	3	2	0	0	0	0.027461	1	7098	7098		49.442	23.867	1	15207	+		6839	16736	5483	5492	8010	8010					-0.050022425476072385
EFTHINRLI	9	Unmodified	_EFTHINRLI_					0	0	0			REV__DDX60|p.L860Qfs*23|1|0.12|ENSG00000137628|chr4:168272134-168272135|-/AACTT|frameshift_variant	REV__DDX60|p.L860Qfs*23|1|0.12|ENSG00000137628|chr4:168272134-168272135|-/AACTT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	571.8233642578125	2	571.819473	1141.62439	0.10677	6.1051E-05	3.4118	0.0019509	3.5185	0.002012	571.8214194480303	73.66	5.2921	73.66	72.842	78.134	0					327	131	5	0	0	0	0.22621	2	7417	7387;7417		71.877	20.542	1	98438000	+		6840	16283	5484	5493	8011;8012	8012					0.05924523117255376
EFTKRYLRL	9	Unmodified	_EFTKRYLRL_					0	0	0			REV__ERCC4|p.Y577*|1|0.08|ENSG00000175595|chr16:13935663-13935663|C/-|frameshift_variant	REV__ERCC4|p.Y577*|1|0.08|ENSG00000175595|chr16:13935663-13935663|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	408.7277526855469	3	409.239907	1224.69789	1.0976	0.0004492	4.235	0.0017331	5.3326	0.0021823	409.2415495811434	47.562	1.4725	44.454	43.927	45.399	-3.1077					65	28	3	0	0	0	0.027462	1	2632	2632		19.104	2.3861	1	243690	+		6841	21907	5485	5494	8013	8013					0.09453071559687487
EFTKRYLRL	9	Unmodified	_EFTKRYLRL_					0	0	0			REV__ERCC4|p.Y577*|1|0.08|ENSG00000175595|chr16:13935663-13935663|C/-|frameshift_variant	REV__ERCC4|p.Y577*|1|0.08|ENSG00000175595|chr16:13935663-13935663|C/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		3	409.239907	1224.69789	0.56783	0.00023238	5.2341	0.002142	5.802	0.0023744	409.2420272646233	47.075	1.3875	44.365	43.794	45.182	-2.7097	-0.044287	0.00053049	NaN	8.6937	66	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90042	+		6842	21907	5485	5494							0.09453071559687487
EFTLLNKEL	9	Unmodified	_EFTLLNKEL_					0	0	0		tr|A0A7D6VNE7|A0A7D6VNE7_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_18610PE=4SV=1	tr|A0A7D6VNE7|A0A7D6VNE7_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_18610PE=4SV=1	tr|A0A7D6VNE7|A0A7D6VNE7_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_18610PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8090209960938	2	553.808239	1105.60193	-0.16576	-9.1799E-05	2.8195	0.0015615	2.6538	0.0014697	553.8101806615355	83.977	2.0185	82.431	82.023	84.041	-1.5462					101	39	3	0	0	0	0.22621	1	7225	7225		71.877	5.4482	1	516380			6843	34698	5486	5495	8014	8014					0.05334878928942999
EFTLQRNLTT	10	Unmodified	_EFTLQRNLTT_					0	0	0		ENST00000396056.6_1_3:44700855-44701443:+|nuORF	ENST00000396056.6_1_3:44700855-44701443:+|nuORF	ENST00000396056.6_1_3:44700855-44701443:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	408.7315673828125	3	408.21906	1221.63535	-0.29753	-0.00012146	1.3489	0.00055065	1.0514	0.00042919	408.219441254962	50.358	0.97995	47.216	46.974	47.954	-3.1416					32	18	3	0	0	0	0.026956	1	2969	2969		38.754	20.92	1	19182			6844	11309	5487	5496	8015	8015					0.03339880700832509
EFTRRGLVT	9	Unmodified	_EFTRRGLVT_					0	0	0		ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.27392578125	2	539.803823	1077.59309	-1.5183	-0.00081958	-1.6008	-0.00086414	-3.1191	-0.0016837	539.8018945336011	71.243	0.34132	67.786	67.533	67.874	-3.4563					9	6	2	0	0	0	0.027462	1	5415	5415		32.812	13.452	1	16772			6845	2506	5488	5497	8016	8016					0.0573995008314796
EFTTHILEVI	10	Unmodified	_EFTTHILEVI_					0	0	0		ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2	ENSG00000117748|ENST00000373912|RPA2	ENSG00000117748|ENST00000373912|RPA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	601.3045654296875	2	601.326796	1200.63904	1.5292	0.00091956	0.26936	0.00016197	1.7986	0.0010815	601.3267850592201	149.75	0.35017	149.75	149.44	149.79	0					11	6	2	0	0	0	0.026685	1	17533	17533		45.972	31.835	1	34102			6846	3277	5489	5498	8017	8017					0.04674550474737771
EFTVNGDPVKK	11	Unmodified	_EFTVNGDPVKK_					0	0	0		nc|ENSG00000176884|Q05586-2|GRIN1;nc|ENSG00000176884|Q05586-3|GRIN1;nc|ENSG00000176884|Q05586-7|GRIN1;nc|ENSG00000176884|Q05586-4|GRIN1;ENSG00000176884|ENST00000371561|GRIN1;nc|ENSG00000176884|Q05586-6|GRIN1;nc|ENSG00000176884|Q05586-5|GRIN1	nc|ENSG00000176884|Q05586-2|GRIN1	nc|ENSG00000176884|Q05586-2|GRIN1	MULTI-MSMS	OvCa99_classI_Rep5	1	411.89044189453125	3	411.88731	1232.6401	0.41828	0.00017228	3.2429	0.0013357	3.6612	0.001508	411.8886500440264	59.745	2.661	59.745	59.377	62.038	0					176	64	5	0	0	0	0.62561	1	5178	5178		42.338	6.0204	1	21584000			6847	7632	5490	5499	8018	8018					0.03308764843609424
EFTWWHLYL	9	Unmodified	_EFTWWHLYL_					0	0	0			REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|453|3|anti-sense	REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|453|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	432.2147521972656	3	432.213358	1293.61824	1.9839	0.00085746	0.47902	0.00020704	2.4629	0.0010645	432.21347849951337	91.241	1.3637	91.241	90.938	92.301	0					90	32	4	0	0	0	0.50149	1	9853	9853		42.396	3.6425	1	3349900	+		6848	28213	5491	5500	8019	8019					-0.0168199511426792
EFVAKGHLF	9	Unmodified	_EFVAKGHLF_					0	0	0		ENSG00000130772|ENST00000373842|MED18	ENSG00000130772|ENST00000373842|MED18	ENSG00000130772|ENST00000373842|MED18	MULTI-MSMS	OvCa99_classI_Rep5	1	524.2867431640625	2	524.284734	1046.55492	1.6516	0.00086593	0.020518	1.0757E-05	1.6722	0.00087668	524.2846292630294	77.468	1.0455	77.468	77.168	78.214	0					67	24	4	0	0	0	0.037627	1	7817	7817		128.86	38.084	1	4686900			6849	4013	5492	5501	8020	8020					0.03350064168466815
EFVGYQALS	9	Unmodified	_EFVGYQALS_					0	0	0		tr|A0A553SKF9|A0A553SKF9_NIACIAlanine--tRNAligaseOS=NialliacirculansOX=1397GN=alaSPE=3SV=1	tr|A0A553SKF9|A0A553SKF9_NIACIAlanine--tRNAligaseOS=NialliacirculansOX=1397GN=alaSPE=3SV=1	tr|A0A553SKF9|A0A553SKF9_NIACIAlanine--tRNAligaseOS=NialliacirculansOX=1397GN=alaSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.7838439941406	2	507.250557	1012.48656	-1.0825	-0.00054911	-2.8213	-0.0014311	-3.9038	-0.0019802	507.2491616303287	81.848	1.5046	79.165	78.668	80.173	-2.683					47	30	3	0	0	0	0.027453	1	6759	6759		54.776	0	1	56072			6850	33612	5493	5502	8021	8021					-0.019182252020527812
EFVQEINEL	9	Unmodified	_EFVQEINEL_					0	0	0			REV__tr|A0A553STI9|A0A553STI9_NIACIIron-containingalcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_05070PE=3SV=1	REV__tr|A0A553STI9|A0A553STI9_NIACIIron-containingalcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_05070PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	560.78271484375	2	560.779679	1119.5448	2.923	0.0016391	-0.7502	-0.0004207	2.1728	0.0012184	560.7791300217492	84.22	0.87691	84.22	83.965	84.841	0					52	20	4	0	0	0	0.38969	1	8808	8808		52.937	0	1	4940600	+		6851	30970	5494	5503	8022	8022					-0.010185883474150614
EFVSLSTII	9	Unmodified	_EFVSLSTII_					0	0	0			REV__ENST00000322684.7_1_17:55709752-55709833:+|nuORF	REV__ENST00000322684.7_1_17:55709752-55709833:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.27362060546875	2	504.784233	1007.55391	0.20825	0.00010512	-3.302	-0.0016668	-3.0937	-0.0015617	504.78253407297916	63.007	0.32373	63.007	62.816	63.14	0					14	7	2	0	0	0	0.027462	1	5617	5617		29.15	0	1	897410	+		6852	24459	5495	5504	8023	8023					0.050438050089155695
EFVSPLIGF	9	Unmodified	_EFVSPLIGF_					0	0	0			REV__nc|ENSG00000008226|Q9Y238-2|DLEC1	REV__nc|ENSG00000008226|Q9Y238-2|DLEC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.3114929199219	2	504.773668	1007.53278	2.1367	0.0010786	-1.8214	-0.00091941	0.31529	0.00015915	504.7720708595263	77.225	0.57893	77.225	76.757	77.336	0					14	13	2	0	0	0	0.027462	1	7739	7739		44.531	26.207	1	171980	+		6853	16447	5496	5505	8024	8024					0.029318397000679397
EFVSPLIGF	9	Unmodified	_EFVSPLIGF_					0	0	0			REV__nc|ENSG00000008226|Q9Y238-2|DLEC1	REV__nc|ENSG00000008226|Q9Y238-2|DLEC1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	504.773668	1007.53278	-0.15331	-7.7389E-05	2.8583	0.0014428	2.705	0.0013654	504.77684869175704	79.687	0.45747	77.347	77.155	77.612	-2.3399	0.060985	0.00237	NaN	35.201	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24253	+		6854	16447	5496	5505							0.029318397000679397
EFVSSGRSL	9	Unmodified	_EFVSSGRSL_					0	0	0		ENSG00000139178|ENST00000266542|C1RL	ENSG00000139178|ENST00000266542|C1RL	ENSG00000139178|ENST00000266542|C1RL	MULTI-MSMS	OvCa99_classI_Rep5	1	491.25311279296875	2	491.253631	980.49271	0.075917	3.7295E-05	2.3101	0.0011349	2.3861	0.0011722	491.254646370821	58.051	0.42336	58.051	57.899	58.322	0					17	9	3	0	0	0	0.28934	1	4913	4913		64.207	1.2288	1	687910			6855	4752	5497	5506	8025	8025					0.0016829302949190605
EFVYTVIIF	9	Unmodified	_EFVYTVIIF_					0	0	0			REV__MER57A-int_dup1703|chr19:23112751-23113886:+|1.0685339057591443|0.266030358890427|2.01|427.0|84|3|anti-sense	REV__MER57A-int_dup1703|chr19:23112751-23113886:+|1.0685339057591443|0.266030358890427|2.01|427.0|84|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	565.8094482421875	2	565.810251	1129.60595	2.5158	0.0014235	-2.2824	-0.0012914	0.23341	0.00013207	565.8084581120038	82.543	0.85348	82.543	82.181	83.035	0					47	19	4	0	0	0	0.46377	1	8567	8567		45.952	0	1	3457300	+		6856	28660	5498	5507	8026	8026					0.04632968422652084
EFYICVDN	8	Unmodified	_EFYICVDN_					0	0	0			REV__tr|A0A7D7A287|A0A7D7A287_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18835PE=4SV=1	REV__tr|A0A7D7A287|A0A7D7A287_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18835PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.7188415527344	2	501.715493	1001.41643	-0.49768	-0.00024969	-2.749	-0.0013792	-3.2467	-0.0016289	501.7138147829997	39.245	0.22506	39.245	39.107	39.332	0					6	4	2	0	0	0	0.028476	1	2286	2286		24.203	7.7296	1	18622	+		6857	32527	5499	5508	8027	8027					-0.08421846862165694
EFYIVYYS	8	Unmodified	_EFYIVYYS_					0	0	0			REV__ENSG00000151687|ENST00000684021|ANKAR	REV__ENSG00000151687|ENST00000684021|ANKAR	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.8668823242188	2	542.255308	1082.49606	-0.42099	-0.00022829	2.8305	0.0015348	2.4095	0.0013065	542.2566926217198	39.085	0.58168	39.085	38.882	39.463	0					18	12	2	0	0	0	0.028476	1	2276	2276		44.531	7.372	1	68979	+		6858	20247	5500	5509	8028	8028					-0.04188456916540417
EFYKIIPL	8	Unmodified	_EFYKIIPL_					0	0	0		ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	MULTI-MSMS	OvCa99_classI_Rep5	1	511.79901123046875	2	511.799686	1021.58482	1.8777	0.00096099	-2.4168	-0.0012369	-0.53911	-0.00027592	511.79824065646653	79.552	1.8763	79.552	79.16	81.037	0					141	45	4	0	0	0	0.64026	1	8088	8088		55.504	4.1688	1	3983800			6859	5099	5501	5510	8029	8029					0.07489003113801118
EFYKLIPQ	8	Unmodified	_EFYKLIPQ_					0	0	0		ENST00000361901.6_2_7:134654616-134654649:+|nuORF	ENST00000361901.6_2_7:134654616-134654649:+|nuORF	ENST00000361901.6_2_7:134654616-134654649:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2699584960938	2	519.286943	1036.55933	2.4437	0.001269	-4.2823	-0.0022237	-1.8385	-0.00095473	519.2848109134136	90.123	0.29492	90.123	89.933	90.228	0					10	6	2	0	0	0	0.028476	1	9631	9631		30.504	3.7075	1	250940			6860	10807	5502	5511	8030	8030					0.042515285913850676
EFYKTDIEI	9	Unmodified	_EFYKTDIEI_					0	0	0			REV__nc|ENSG00000151360|Q8N6M5-2|ALLC	REV__nc|ENSG00000151360|Q8N6M5-2|ALLC	MULTI-MSMS	OvCa99_classI_Rep5	1	579.2916259765625	2	579.289879	1156.56521	1.7337	0.0010043	0.85594	0.00049584	2.5897	0.0015002	579.2901392239967	99.904	0.53749	99.904	99.612	100.15	0					28	12	3	0	0	0	0.12515	1	11054	11054		90.37	5.209	1	2903000	+		6861	20225	5503	5512	8031	8031					-0.00681417687587782
EFYRVYPY	8	Unmodified	_EFYRVYPY_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2915649414062	2	568.7742	1135.53385	2.1193	0.0012054	3.1367	0.0017841	5.256	0.0029895	568.7762666511168	110.41	0.31345	110.41	110.18	110.49	0					9	6	2	0	0	0	0.028476	1	12521	12521		31.955	2.8053	1	397790			6862	1548	5504	5513	8032	8032					-0.02849945931052389
EFYTPRVEL	9	Unmodified	_EFYTPRVEL_					0	0	0			REV__nc|ENSG00000164197|Q86T96-2|RNF180	REV__nc|ENSG00000164197|Q86T96-2|RNF180	MULTI-MSMS	OvCa9_classI_Rep4_	4	577.2981567382812	2	577.298039	1152.58152	-4.016	-0.0023184	3.4464	0.0019896	-0.56958	-0.00032882	577.2997647971449	152.27	1.3348	150.84	150.5	151.83	-1.435					39	28	2	0	0	0	0.56889	1	15108	15108		35.618	8.9254	1	34792	+		6863	20959	5505	5514	8033	8033					0.011337082691397882
EGADPEADSLD	11	Unmodified	_EGADPEADSLD_					0	0	0			REV__VEGFC|p.N321Tfs*33|1|0.54|ENSG00000150630|chr4:176687370-176687370|T/-|frameshift_variant	REV__VEGFC|p.N321Tfs*33|1|0.54|ENSG00000150630|chr4:176687370-176687370|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	559.3338623046875	2	559.72784	1117.44113	0.15953	8.9293E-05	-4.4668	-0.0025002	-4.3073	-0.0024109	559.7249096301489	105.67	0.64876	105.23	104.9	105.55	-0.43642					21	12	2	0	0	0	0.025298	1	9799	9799		31.53	0	1	18048	+		6864	20197	5506	5515	8034	8034					-0.11289540245752505
EGAEAYKLL	9	Unmodified	_EGAEAYKLL_					0	0	0			REV__ENSG00000138823|ENST00000265517|MTTP	REV__ENSG00000138823|ENST00000265517|MTTP	MULTI-SECPEP	OvCa9_classI_Rep3	3	497.78802490234375	2	497.266207	992.517862	1.5515	0.00077149	-1.2486	-0.00062089	0.30285	0.0001506	497.26578912942955	111.86	0.59183	110.76	110.6	111.19	-1.1038					14	11	2	0	0	0	0.027433	1	8155	8155		64.207	14.996	1	16555	+		6865	19580	5507	5516	8035	8035					0.02130347832053303
EGAFGALQKI	10	Unmodified	_EGAFGALQKI_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;nc|ENSG00000083312|Q92973-3|TNPO1;ENST00000588484.1_1_19:12826020-12830096:-|nuORF	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	OvCa99_classI_Rep5	1	517.2855224609375	2	517.287474	1032.5604	-1.3454	-0.00069593	0.41006	0.00021212	-0.93529	-0.00048381	517.2876353263929	34.748	1.2621	34.748	34.351	35.614	0					85	26	6	0	0	0	0.48198	1	1742	1742		56.721	1.2168	1	10038000			6866	2471	5508	5517	8036	8036					0.04541742960282136
EGAGDGAQPP	10	Unmodified	_EGAGDGAQPP_					0	0	0			REV__nc|ENSG00000148835|Q15542-2|TAF5	REV__nc|ENSG00000148835|Q15542-2|TAF5	MULTI-SECPEP	OvCa99_classI_Rep5	1	449.27569580078125	2	449.698689	897.382825	2.1863	0.00098317	2.0079	0.00090295	4.1942	0.0018861	449.69948495306227	90.693	0.39513	90.693	90.462	90.857	0					15	9	2	0	0	0	0.026915	1	9739	9739		27.882	10.517	1	336770	+		6867	20130	5509	5518	8037	8037					-0.06997132309709286
EGAHASLSL	9	Unmodified	_EGAHASLSL_					0	0	0		ENSG00000144504|ENST00000401804|ANKMY1;nc|ENSG00000144504|Q9P2S6-3|ANKMY1;nc|ENSG00000144504|Q9P2S6-2|ANKMY1	ENSG00000144504|ENST00000401804|ANKMY1	ENSG00000144504|ENST00000401804|ANKMY1	MULTI-MSMS	OvCa99_classI_Rep5	1	442.72894287109375	2	442.727249	883.439946	0.97402	0.00043122	-0.68955	-0.00030528	0.28447	0.00012594	442.72676660805945	60.683	0.50898	60.683	60.434	60.943	0					19	11	2	0	0	0	0.29717	1	5312	5312		63.306	2.3343	1	853350			6868	5155	5510	5519	8038	8038					-0.006436650333284888
EGAKEREAL	9	Unmodified	_EGAKEREAL_					0	0	0		ENSG00000058453|ENST00000375541|CROCC;nc|ENSG00000058453|Q5TZA2-2|CROCC	ENSG00000058453|ENST00000375541|CROCC	ENSG00000058453|ENST00000375541|CROCC	MULTI-MSMS	OvCa99_classI_Rep5	1	501.7644958496094	2	501.764363	1001.51417	-0.00050248	-2.5213E-07	-0.69501	-0.00034873	-0.69551	-0.00034898	501.7639969726405	31.243	0.62901	31.243	30.93	31.559	0					37	12	4	0	0	0	0.21284	1	1264	1264		74.165	14.047	1	1762200			6869	1245	5511	5520	8039	8039					0.013476780581868297
EGAKRDEL	8	Unmodified	_EGAKRDEL_					0	0	0		ENST00000495107.1_1_22:32009004-32009067:+|nuORF	ENST00000495107.1_1_22:32009004-32009067:+|nuORF	ENST00000495107.1_1_22:32009004-32009067:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	459.2370300292969	2	459.237981	916.461409	-0.78853	-0.00036212	0.62757	0.00028821	-0.16096	-7.3919E-05	459.23817942164027	49.656	0.82793	49.656	49.373	50.201	0					46	18	4	0	0	0	0.57734	1	3712	3712		68.787	0.30212	1	3907200			6870	12771	5512	5521	8040	8040					-0.00016280004626878508
EGALKAREY	9	Unmodified	_EGALKAREY_					0	0	0			REV__tr|A0A7D6VTD1|A0A7D6VTD1_9CLOTDUF1446domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20365PE=4SV=1	REV__tr|A0A7D6VTD1|A0A7D6VTD1_9CLOTDUF1446domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20365PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.3026123046875	2	518.774731	1035.53491	1.8798	0.00097517	3.0666	0.0015909	4.9464	0.0025661	518.7765922837804	90.468	0.54264	89.166	88.978	89.521	-1.302					23	10	3	0	0	0	0.027462	1	8011	8011		26.693	4.733	1	23643	+		6871	31596	5513	5522	8041	8041					0.018562684378366612
EGAVAEEHA	9	Unmodified	_EGAVAEEHA_					0	0	0		PRUNE2|p.I2107Nfs*6|1|0.11|ENSG00000106772|chr9:76705954-76705955|-/T|frameshift_variant;PRUNE2|p.D2106Efs*46|1|0.11|ENSG00000106772|chr9:76705956-76705957|-/CATCATATTCAAAATCACCCCACGAGGCT|frameshift_variant;PRUNE2|p.V2237Cfs*11|1|0.06|ENSG00000106772|chr9:76705569-76705570|-/T|frameshift_variant;PRUNE2|p.E2525Gfs*3|1|0.07|ENSG00000106772|chr9:76704039-76704039|T/-|frameshift_variant;nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2;PRUNE2|p.P473S|1|0.13|ENSG00000106772|chr9:76710857-76710857|G/A|missense_variant	PRUNE2|p.I2107Nfs*6|1|0.11|ENSG00000106772|chr9:76705954-76705955|-/T|frameshift_variant	PRUNE2|p.I2107Nfs*6|1|0.11|ENSG00000106772|chr9:76705954-76705955|-/T|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.2696533203125	2	456.706514	911.398475	-0.4005	-0.00018291	0.11195	5.1126E-05	-0.28856	-0.00013179	456.7065125232553	41.61	0.52358	41.61	41.285	41.809	0					19	11	2	0	0	0	0.027433	1	2582	2582		51.335	0	1	51875			6872	2573	5514	5523	8042	8042					-0.06076845792665608
EGAVARALLT	10	Unmodified	_EGAVARALLT_					0	0	0			REV__tr|A0A553SHF3|A0A553SHF3_NIACIATP-dependentzincmetalloproteaseFtsHOS=NialliacirculansOX=1397GN=ftsHPE=3SV=1	REV__tr|A0A553SHF3|A0A553SHF3_NIACIATP-dependentzincmetalloproteaseFtsHOS=NialliacirculansOX=1397GN=ftsHPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	501.28076171875	2	500.792924	999.571294	-0.89615	-0.00044879	-1.3077	-0.00065486	-2.2038	-0.0011037	500.7902330251703	90.349	1.4856	88.269	87.388	88.873	-2.0805					36	23	4	0	0	0	0.026867	1	5574	5574		35.152	0	1	61228	+		6873	29796	5515	5524	8043	8043					0.07149145334562945
EGAVRDLSL	9	Unmodified	_EGAVRDLSL_					0	0	0			REV__ENST00000557515.5_1_14:23540438-23540549:-|nuORF	REV__ENST00000557515.5_1_14:23540438-23540549:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	480.2577819824219	2	480.261456	958.50836	-0.21022	-0.00010096	0.69359	0.0003331	0.48337	0.00023214	480.2616017396813	73.204	0.75568	73.204	72.842	73.597	0					49	18	4	0	0	0	0.29519	1	7172	7172		63.534	1.4264	1	3412500	+		6874	27574	5516	5525	8044	8044					0.027445795465382616
EGDDQKELT	9	Unmodified	_EGDDQKELT_					0	0	0			REV__ENST00000450917.1_1_2:3526678-3526861:+|nuORF	REV__ENST00000450917.1_1_2:3526678-3526861:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.278076171875	2	517.735468	1033.45638	0.87254	0.00045175	-0.35957	-0.00018616	0.51297	0.00026558	518.2367441817313	105.86	0.26159	105.86	105.62	105.88	0					8	5	2	0	0	0	0.027462	1	11885	11885		30.318	4.7437	1	117360	+		6875	25965	5517	5526	8045	8045					-0.05900628657900597
EGDECVGVVE	10	Unmodified	_EGDECVGVVE_					0	0	0			REV__tr|A0A7D7A213|A0A7D7A213_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17780PE=4SV=1	REV__tr|A0A7D7A213|A0A7D7A213_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17780PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.2962036132812	2	518.218597	1034.42264	-0.87018	-0.00045094	2.9162	0.0015112	2.046	0.0010603	518.2198889108254	93.279	0.19851	91.317	91.228	91.427	-1.9617					5	3	2	0	0	0	0.026956	1	5953	5953		14.137	0	1	6187.7	+		6876	32517	5518	5527	8046	8046					-0.09319373421294586
EGDGKMRPCL	10	Unmodified	_EGDGKMRPCL_					0	0	0			REV__ENSG00000070018|ENST00000261349|LRP6	REV__ENSG00000070018|ENST00000261349|LRP6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.80419921875	2	553.260076	1104.5056	-0.96306	-0.00053282	-2.3846	-0.0013193	-3.3477	-0.0018521	553.2586950081496	43.526	0.92282	40.518	40.115	41.038	-3.0074					36	17	3	0	0	0	0.026782	1	2063	2063		37.812	0	1	60847	+		6877	16872	5519	5528	8047	8047					-0.042473351742955856
EGDHLFTI	8	Unmodified	_EGDHLFTI_					0	0	0			REV__tr|A0A553SUD4|A0A553SUD4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06720PE=4SV=1	REV__tr|A0A553SUD4|A0A553SUD4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06720PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	466.7876892089844	2	466.229625	930.444697	1.3324	0.00062122	0.92469	0.00043112	2.2571	0.0010523	466.2300724170446	143.91	0.59415	143.91	143.66	144.26	0					15	11	2	0	0	0	0.028476	1	16846	16846		52.299	13.493	1	16154	+		6878	31064	5520	5529	8048	8048					-0.023307808905656202
EGDMVLRVL	9	Unmodified	_EGDMVLRVL_					0	0	0		ENST00000402268.1_1_2:43010452-43019676:-|nuORF;nc|ENSG00000162882|P46952-2|HAAO;ENST00000402698.6_1_2:42997631-43019676:-|nuORF;ENSG00000162882|ENST00000294973|HAAO	ENST00000402268.1_1_2:43010452-43019676:-|nuORF	ENST00000402268.1_1_2:43010452-43019676:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.7461547851562	2	516.281334	1030.54812	-0.10816	-5.5839E-05	-2.6067	-0.0013458	-2.7149	-0.0014017	516.2800034861182	95.675	0.63838	93.846	93.632	94.271	-1.8286					19	12	2	0	0	0	0.027433	1	6289	6289		60.972	18.576	1	33752			6879	6244	5521	5530	8049	8049					0.03406383225592435
EGDMVLRVL	9	Unmodified	_EGDMVLRVL_					0	0	0		ENST00000402268.1_1_2:43010452-43019676:-|nuORF;nc|ENSG00000162882|P46952-2|HAAO;ENST00000402698.6_1_2:42997631-43019676:-|nuORF;ENSG00000162882|ENST00000294973|HAAO	ENST00000402268.1_1_2:43010452-43019676:-|nuORF	ENST00000402268.1_1_2:43010452-43019676:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	516.281334	1030.54812	-0.16413	-8.4737E-05	-2.2345	-0.0011536	-2.3986	-0.0012384	516.2799524428517	95.043	0.54096	93.971	93.633	94.174	-1.0728	0.063195	5.7468E-05	NaN	49.442	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30050			6880	6244	5521	5530							0.03406383225592435
EGDPFYEV	8	Unmodified	_EGDPFYEV_					0	0	0		ENSG00000158158|ENST00000377075|CNNM4;nc|ENSG00000148842|Q9H8M5-2|CNNM2;ENSG00000148842|ENST00000369878|CNNM2;nc|ENSG00000119946|Q9NRU3-2|CNNM1;ENSG00000119946|ENST00000356713|CNNM1;ENSG00000168763|ENST00000305510|CNNM3	ENSG00000158158|ENST00000377075|CNNM4;nc|ENSG00000119946|Q9NRU3-2|CNNM1;ENSG00000168763|ENST00000305510|CNNM3	ENSG00000158158|ENST00000377075|CNNM4	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.78118896484375	2	478.205815	954.397078	0.068683	3.2845E-05	0.24399	0.00011668	0.31267	0.00014952	478.2058077471733	70.584	0.43083	70.584	70.369	70.8	0					15	10	2	0	0	0	0.028476	1	6782	6782		31.955	0	1	506620			6881	5935;3407;6938	5522	5531	8050	8050					-0.08194479881422012
EGDRMRPL	8	Unmodified	_EGDRMRPL_					0	0	0			REV__chr8:144414434-144414633|118|15.55|0.05|8.32|-|2|SLC39A4,None|1	REV__chr8:144414434-144414633|118|15.55|0.05|8.32|-|2|SLC39A4,None|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.79681396484375	2	487.247826	972.481099	-0.68499	-0.00033376	2.7084	0.0013197	2.0234	0.0009859	487.25117142456713	53.199	1.0668	49.991	49.746	50.813	-3.208					63	20	4	0	0	0	0.028476	1	3305	3305		55.504	0	1	146780	+		6882	16113	5523	5532	8051	8051					-0.0062422726549584695
EGDWITRPLQ	10	Unmodified	_EGDWITRPLQ_					0	0	0			REV__SIX6|p.P120Q|1|0.66|ENSG00000184302|chr14:60509757-60509757|C/A|missense_variant	REV__SIX6|p.P120Q|1|0.66|ENSG00000184302|chr14:60509757-60509757|C/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	405.9111022949219	3	405.543655	1213.60914	1.3701	0.00055562	1.1637	0.00047195	2.5338	0.0010276	405.5436044308611	64.66	0.58173	61.936	61.652	62.233	-2.7245					24	10	3	0	0	0	0.027089	1	4939	4939		38.754	1.2454	1	15836	+		6883	29364	5524	5533	8052	8052					0.010876115293513067
EGDWPWLLL	9	Unmodified	_EGDWPWLLL_					0	0	0		ENST00000269033.7_1_17:27953621-27953657:-|nuORF	ENST00000269033.7_1_17:27953621-27953657:-|nuORF	ENST00000269033.7_1_17:27953621-27953657:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	564.7919921875	2	564.78985	1127.56515	1.7971	0.001015	0.58313	0.00032934	2.3803	0.0013444	564.7901091080072	147.55	0.67621	147.55	147.26	147.93	0					29	13	3	0	0	0	0.34496	1	17259	17259		57.811	10.154	1	174760			6884	9978	5525	5534	8053	8053					0.006466271030376447
EGEARTLDI	9	Unmodified	_EGEARTLDI_					0	0	0			REV__nc|ENSG00000170085|Q8NDZ2|SIMC1	REV__nc|ENSG00000170085|Q8NDZ2|SIMC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.27655029296875	2	502.256371	1002.49819	-1.1042	-0.00055459	0.015365	7.717E-06	-1.0888	-0.00054687	502.2564450580609	80.053	0.59057	77.302	77.034	77.625	-2.7511					17	11	2	0	0	0	0.027462	1	6503	6503		31.53	8.4873	1	34193	+		6885	21513	5526	5535	8054	8054					-0.0029602817870681974
EGEKVDDKH	9	Unmodified	_EGEKVDDKH_					0	0	0			REV__ENSG00000135842|ENST00000367511|NIBAN1	REV__ENSG00000135842|ENST00000367511|NIBAN1	MULTI-MSMS	OvCa99_classI_Rep5	1	528.7499389648438	2	528.751453	1055.48835	0.69418	0.00036705	-4.2388	-0.0022413	-3.5446	-0.0018742	528.7490301574554	139.93	3.5152	139.93	139.32	142.83	0					142	71	3	0	0	0	0.55011	1	16375	16375		37.812	0.65241	1	525790	+		6886	19328	5527	5536	8055	8055					-0.03717216184099925
EGEPFTSIK	9	Unmodified	_EGEPFTSIK_					0	0	0			REV__nc|ENSG00000160058|Q9NW68-2|BSDC1	REV__nc|ENSG00000160058|Q9NW68-2|BSDC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	504.80096435546875	2	504.25584	1006.49713	-0.37321	-0.00018819	-2.7802	-0.0014019	-3.1534	-0.0015901	504.75821462532406	39.138	0.69547	36.211	35.799	36.495	-2.9264					26	13	3	0	0	0	0.027461	1	1616	1616		32.812	6.1195	1	14722	+		6887	20635	5528	5537	8056	8056					-0.005862425475925193
EGEPIRKV	8	Unmodified	_EGEPIRKV_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.75421142578125	2	464.266542	926.51853	-0.093464	-4.3392E-05	0.61541	0.00028571	0.52195	0.00024232	464.2667003165061	56.681	0.65939	53.387	53.07	53.73	-3.2944					20	12	2	0	0	0	0.028476	1	3615	3615		30.504	7.4612	1	35126	+		6888	19568	5529	5538	8057	8057					0.05233187271767292
EGERQLKSLL	10	Unmodified	_EGERQLKSLL_					0	0	0		ENST00000471079.1_1_X:106358576-106359983:-|nuORF;nc|ENSG00000089682|Q96IZ5-3|RBM41;nc|ENSG00000089682|Q96IZ5-2|RBM41;nc|ENSG00000089682|Q96IZ5|RBM41;ENSG00000089682|ENST00000685964|RBM41;ENST00000485676.5_1_X:106359410-106359983:-|nuORF	ENST00000471079.1_1_X:106358576-106359983:-|nuORF	ENST00000471079.1_1_X:106358576-106359983:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.8349609375	2	586.83532	1171.65609	-1.2922	-0.0007583	0.87369	0.00051271	-0.41849	-0.00024558	586.835730888459	92.749	1.355	90.242	89.857	91.212	-2.5072					84	27	4	0	0	0	0.39718	1	8060	8060		68.846	12.125	1	840080			6889	1825	5530	5539	8058	8058					0.07712471080526484
EGESKAVEL	9	Unmodified	_EGESKAVEL_					0	0	0			REV__tr|A0A7D7AG70|A0A7D7AG70_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07940PE=4SV=1	REV__tr|A0A7D7AG70|A0A7D7AG70_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07940PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	481.2468566894531	2	481.245472	960.476391	2.2878	0.001101	-0.47806	-0.00023007	1.8097	0.00087092	481.2451248689413	97.099	0.60054	97.099	96.838	97.438	0					26	13	3	0	0	0	0.12515	1	10651	10651		90.37	10.657	1	1137400	+		6890	32722	5531	5540	8059	8059					-0.005428329272717747
EGESKAVEL	9	Unmodified	_EGESKAVEL_					0	0	0			REV__tr|A0A7D7AG70|A0A7D7AG70_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07940PE=4SV=1	REV__tr|A0A7D7AG70|A0A7D7AG70_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07940PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	481.245472	960.476391	2.2878	0.001101	-0.47806	-0.00023007	1.8097	0.00087092	481.2451248689413	97.099	0.60054	97.099	96.838	97.438	0	0	0	NaN	90.37	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1137400	+		6891	32722	5531	5540							-0.005428329272717747
EGEVEERTI	9	Unmodified	_EGEVEERTI_					0	0	0			REV__PPM1E|p.K247Nfs*7|1|0.33|ENSG00000175175|chr17:58965850-58965851|-/T|frameshift_variant	REV__PPM1E|p.K247Nfs*7|1|0.33|ENSG00000175175|chr17:58965850-58965851|-/T|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.8091430664062	2	531.259111	1060.50367	1.0215	0.0005427	1.3204	0.00070147	2.3419	0.0012442	531.2598651827049	74.619	0.30976	74.619	74.366	74.676	0					9	7	2	0	0	0	0.027461	1	7354	7354		58.782	5.693	1	146600	+		6892	21876	5532	5541	8060	8060					-0.024163493868854857
EGEVEERTI	9	Unmodified	_EGEVEERTI_					0	0	0			REV__PPM1E|p.K247Nfs*7|1|0.33|ENSG00000175175|chr17:58965850-58965851|-/T|frameshift_variant	REV__PPM1E|p.K247Nfs*7|1|0.33|ENSG00000175175|chr17:58965850-58965851|-/T|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	531.259111	1060.50367	-0.66629	-0.00035397	-1.2656	-0.00067235	-1.9319	-0.0010263	531.2591530472839	76.956	0.315	74.584	74.348	74.663	-2.3715	-0.017329	-0.0014657	NaN	49.442	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28988	+		6893	21876	5532	5541							-0.024163493868854857
EGFDIERY	8	Unmodified	_EGFDIERY_					0	0	0			REV__chr5:16180499-16180645|86|14.91|0.37|5.33|-|0|None,MARCHF11|1	REV__chr5:16180499-16180645|86|14.91|0.37|5.33|-|0|None,MARCHF11|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.3143920898438	2	514.737814	1027.46108	1.8512	0.00095287	3.4229	0.0017619	5.2741	0.0027148	514.7395451439714	77.497	0.33675	77.497	77.293	77.629	0					11	7	2	0	0	0	0.028476	1	7807	7807		33.516	5.2613	1	251000	+		6894	16062	5533	5542	8061	8061					-0.051556997244460945
EGFDIERY	8	Unmodified	_EGFDIERY_					0	0	0			REV__chr5:16180499-16180645|86|14.91|0.37|5.33|-|0|None,MARCHF11|1	REV__chr5:16180499-16180645|86|14.91|0.37|5.33|-|0|None,MARCHF11|1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	514.737814	1027.46108	-0.77379	-0.0003983	3.3943	0.0017472	2.6205	0.0013489	514.7395245282977	80.016	0.63857	77.264	76.986	77.624	-2.7514	-0.11642	-1.4276E-05	NaN	30.504	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56552	+		6895	16062	5533	5542							-0.051556997244460945
EGFLWSEEK	9	Unmodified	_EGFLWSEEK_					0	0	0		ENST00000311351.8_1_8:38027330-38027414:-|nuORF	ENST00000311351.8_1_8:38027330-38027414:-|nuORF	ENST00000311351.8_1_8:38027330-38027414:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	562.76611328125	2	562.766571	1123.51859	0.06028	3.3923E-05	-0.72117	-0.00040585	-0.66089	-0.00037193	562.7660370416633	41.626	6.1897	41.626	40.795	46.985	0					363	141	3	0	0	0	0.53483	1	2562	2562		39.253	0	1	1452500			6896	10298	5534	5543	8062	8062					-0.03822857518912315
EGFPLSHIV	9	Unmodified	_EGFPLSHIV_					0	0	0			REV__ENSG00000198300|ENST00000326441|PEG3	REV__ENSG00000198300|ENST00000326441|PEG3	MULTI-MSMS	OvCa99_classI_Rep5	1	499.7706298828125	2	499.768917	997.523281	2.1231	0.001061	3.6536	0.001826	5.7767	0.002887	499.7705543108703	106.09	1.1463	106.09	105.66	106.81	0					58	25	4	0	0	0	0.36502	1	11922	11922		55.504	5.4797	1	2426500	+		6897	23008	5535	5544	8063	8063					0.024420714145207967
EGFSRGEFI	9	Unmodified	_EGFSRGEFI_					0	0	0		ENST00000539726.5_1_12:7519884-7520723:-|nuORF	ENST00000539726.5_1_12:7519884-7520723:-|nuORF	ENST00000539726.5_1_12:7519884-7520723:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.3016967773438	2	521.253631	1040.49271	-0.8573	-0.00044687	0.6433	0.00033532	-0.21401	-0.00011155	521.2541186150492	82.672	0.48856	79.989	79.684	80.173	-2.6829					15	9	2	0	0	0	0.027462	1	6819	6819		31.53	13.205	1	35210			6898	13442	5536	5545	8064	8064					-0.025917069705201357
EGFTEKNV	8	Unmodified	_EGFTEKNV_					0	0	0		nc|ENSG00000214655|A7E2V4-4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4-5|ZSWIM8;nc|ENSG00000214655|A7E2V4-2|ZSWIM8;ZSWIM8|p.A1142Efs*3|1|0.08|ENSG00000214655|chr10:73797383-73797384|CC/-|frameshift_variant;VCL-KIAA0913|3|fusion;VCL-KIAA0913|1|fusion;VCL-KIAA0913|2|fusion	nc|ENSG00000214655|A7E2V4-4|ZSWIM8	nc|ENSG00000214655|A7E2V4-4|ZSWIM8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.2458801269531	2	462.227082	922.439611	-0.70907	-0.00032775	1.3393	0.00061904	0.63019	0.00029129	462.2276078148657	63.855	0.52931	60.38	60.156	60.686	-3.475					20	10	3	0	0	0	0.028476	1	4521	4521		51.335	25.885	1	36342			6899	9177	5537	5546	8065	8065					-0.024710847531878244
EGGAALEAT	9	Unmodified	_EGGAALEAT_					0	0	0		ENST00000422066.5_1_3:176782793-176915000:-|nuORF	ENST00000422066.5_1_3:176782793-176915000:-|nuORF	ENST00000422066.5_1_3:176782793-176915000:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	409.91888427734375	2	409.698158	817.381762	0.77161	0.00031613	-0.94156	-0.00038576	-0.16995	-6.9629E-05	409.69689058255886	21.533	0.20234	20.194	20.068	20.27	-1.3386					5	3	2	0	0	0	0.027462	1	165	165		10.265	0	1	4071.5			6900	11692	5538	5547	8066	8066					-0.03423346678619055
EGGALRSRTT	10	Unmodified	_EGGALRSRTT_					0	0	0		ENST00000463455.1_1_22:32804140-32808230:-|nuORF	ENST00000463455.1_1_22:32804140-32808230:-|nuORF	ENST00000463455.1_1_22:32804140-32808230:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.806396484375	2	524.280712	1046.54687	-1.4173	-0.00074308	-2.7676	-0.001451	-4.1849	-0.0021941	524.2804888548715	92.883	1.0112	90.376	89.602	90.614	-2.5072					30	19	3	0	0	0	0.026826	1	8101	8101		22.58	0	1	41721			6901	12226	5539	5548	8067	8067					0.025458851810299166
EGGATPTAAPE	11	Unmodified	_EGGATPTAAPE_					0	0	0		ENSG00000165650|ENST00000334464|PDZD8	ENSG00000165650|ENST00000334464|PDZD8	ENSG00000165650|ENST00000334464|PDZD8	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.7173767089844	2	500.732729	999.450904	-0.66691	-0.00033394	-0.80788	-0.00040453	-1.4748	-0.00073847	500.7316449040241	40.15	0.37025	40.15	40.016	40.386	0					14	7	3	0	0	0	0.025457	1	2426	2426		29.17	0	1	59987			6902	6584	5540	5549	8068	8068					-0.04884307449708558
EGGDSNGSL	9	Unmodified	_EGGDSNGSL_					0	0	0			REV__ENSG00000151304|ENST00000339397|SRFBP1	REV__ENSG00000151304|ENST00000339397|SRFBP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	417.9168701171875	2	418.175047	834.33554	0.54691	0.0002287	0.76979	0.00032191	1.3167	0.00055061	418.1752554716304	31.981	0.74546	31.981	31.807	32.553	0					28	14	3	0	0	0	0.027462	1	1412	1412		24.519	8.046	1	322910	+		6903	20222	5541	5550	8069	8069					-0.08825411580687614
EGGEGLMVF	9	Unmodified	_EGGEGLMVF_					0	0	0			REV__ENSG00000101052|ENST00000373030|IFT52	REV__ENSG00000101052|ENST00000373030|IFT52	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.28021240234375	2	469.718036	937.421518	0.30806	0.0001447	3.3181	0.0015586	3.6261	0.0017033	469.7194739552326	102.15	0.42008	99.955	99.676	100.1	-2.1994					10	7	2	0	0	0	0.027456	1	9197	9197		38.806	16.846	1	6637.6	+		6904	17468	5542	5551	8070	8070					-0.04969542999549503
EGGEGLMVF	9	Unmodified	_EGGEGLMVF_					0	0	0			REV__ENSG00000101052|ENST00000373030|IFT52	REV__ENSG00000101052|ENST00000373030|IFT52	MULTI-MATCH	OvCa9_classI_Rep2	2		2	469.718036	937.421518	-1.0899	-0.00051196	7.8668	0.0036952	6.7768	0.0031832	469.7226038664512	100.68	0.19907	99.854	99.757	99.956	-0.83052	-0.050851	0.003138	NaN	38.806	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4303.1	+		6905	17468	5542	5551							-0.04969542999549503
EGGEGRRVL	9	Unmodified	_EGGEGRRVL_					0	0	0			REV__nc|ENSG00000120156|Q02763-2|TEK	REV__nc|ENSG00000120156|Q02763-2|TEK	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.2933654785156	2	486.764697	971.514842	0.0090384	4.3996E-06	-0.17106	-8.3267E-05	-0.16202	-7.8867E-05	486.764378402488	39.154	0.99324	36.228	35.997	36.991	-2.9264					29	19	2	0	0	0	0.027418	1	1634	1634		58.782	6.4828	1	27071	+		6906	18487	5543	5552	8071	8071					0.0279451749790951
EGGERRRT	8	Unmodified	_EGGERRRT_					0	0	0		ENSG00000163945|ENST00000389851|UVSSA	ENSG00000163945|ENST00000389851|UVSSA	ENSG00000163945|ENST00000389851|UVSSA	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.2655029296875	2	480.752121	959.48969	-0.37295	-0.0001793	-2.8917	-0.0013902	-3.2646	-0.0015695	480.75019474115174	55.105	0.38179	55.105	54.891	55.273	0					14	8	2	0	0	0	0.028476	1	4481	4481		40.778	3.7497	1	217310			6907	6383	5544	5553	8072	8072					0.008324626953367442
EGGFIDWLL	9	Unmodified	_EGGFIDWLL_					0	0	0			REV__tr|A0A7D6VVQ1|A0A7D6VVQ1_9CLOTNicotinamidephosphoribosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05845PE=3SV=1	REV__tr|A0A7D6VVQ1|A0A7D6VVQ1_9CLOTNicotinamidephosphoribosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05845PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.2769165039062	2	525.26875	1048.52295	-1.4994	-0.0007876	-2.3635	-0.0012415	-3.8629	-0.0020291	525.2670828727053	41.785	0.71886	38.805	38.593	39.312	-2.9804					20	13	2	0	0	0	0.027462	1	1869	1869		29.15	0	1	25591	+		6908	31730	5545	5554	8073	8073					0.0006265169467951637
EGGFILQFI	9	Unmodified	_EGGFILQFI_					0	0	0			REV__ENST00000543693.5_1_9:14086406-14086523:-|nuORF	REV__ENST00000543693.5_1_9:14086406-14086523:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	512.2792358398438	2	512.279118	1022.54368	0.55055	0.00028204	-0.84106	-0.00043086	-0.29051	-0.00014882	512.2785275859809	112.08	2.0707	111.96	111.24	113.31	-0.12174					99	41	3	0	0	0	0.40667	1	10595	10595		51.335	1.8939	1	239540	+		6909	27391	5546	5555	8074	8074					0.03331242074330021
EGGFRLIRAKI	11	Unmodified	_EGGFRLIRAKI_					0	0	0		tr|A0A553SMA9|A0A553SMA9_NIACIAminotransferaseclassV-foldPLP-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_22235PE=4SV=1	tr|A0A553SMA9|A0A553SMA9_NIACIAminotransferaseclassV-foldPLP-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_22235PE=4SV=1	tr|A0A553SMA9|A0A553SMA9_NIACIAminotransferaseclassV-foldPLP-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_22235PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	630.3871459960938	2	630.382771	1258.75099	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.91	1	149.91	149.41	150.41	0								0	0	0	0.19297	1	17549	17549		41.427	1.3684	1				6910	33818	5547	5556	8075	8075					0.13196449342353844
EGGFRRKP	8	Unmodified	_EGGFRRKP_					0	0	0		ENST00000322357.8_1_19:4046144-4046315:-|nuORF	ENST00000322357.8_1_19:4046144-4046315:-|nuORF	ENST00000322357.8_1_19:4046144-4046315:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	474.2704772949219	2	473.764501	945.514448	0.040717	1.929E-05	0.14485	6.8626E-05	0.18557	8.7916E-05	473.7645261641961	40.257	1.1901	37.303	36.963	38.153	-2.9541					40	22	3	0	0	0	0.028476	1	1799	1799		31.955	1.4512	1	132670			6911	10383	5548	5557	8076	8076					0.03951142568712385
EGGGKSERR	9	Unmodified	_EGGGKSERR_					0	0	0		ENST00000494735.1_1_7:142960709-142960961:+|nuORF	ENST00000494735.1_1_7:142960709-142960961:+|nuORF	ENST00000494735.1_1_7:142960709-142960961:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.258544921875	2	488.251954	974.489356	-0.83095	-0.00040571	-2.5111	-0.0012261	-3.3421	-0.0016318	488.25065615347086	42.123	0.97425	39.142	38.853	39.828	-2.9804					27	18	2	0	0	0	0.027462	1	1955	1955		31.53	14.165	1	25005			6912	12762	5549	5558	8077	8077					0.0010904297548677278
EGGGKSERR	9	Unmodified	_EGGGKSERR_					0	0	0		ENST00000494735.1_1_7:142960709-142960961:+|nuORF	ENST00000494735.1_1_7:142960709-142960961:+|nuORF	ENST00000494735.1_1_7:142960709-142960961:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	488.251954	974.489356	1.288	0.00062886	-4.9152	-0.0023999	-3.6272	-0.001771	488.2493955881633	42.119	0.74002	39.41	39.029	39.769	-2.7097	0.13369	-0.00078736	NaN	31.53	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25324			6913	12762	5549	5558							0.0010904297548677278
EGGGTLLALA	10	Unmodified	_EGGGTLLALA_					0	0	0			REV__ENSG00000164040|ENST00000296425|PGRMC2	REV__ENSG00000164040|ENST00000296425|PGRMC2	MULTI-SECPEP	OvCa9_classI_Rep2	2	451.770263671875	2	451.2531	900.491647	2.4037	0.0010847	-2.4549	-0.0011078	-0.051265	-2.3133E-05	451.2518957578365	107.88	0.83616	107.65	107.49	108.32	-0.22498					26	16	2	0	0	0	0.026871	1	10103	10103		29.15	0	1	22736	+		6914	20925	5550	5559	8078	8078					0.037420786605594
EGGGVGGGHWR	11	Unmodified	_EGGGVGGGHWR_					0	0	0		ENST00000466327.5_1_6:30312945-30313451:+|nuORF;ENST00000498414.5_1_6:30313175-30313451:+|nuORF	ENST00000466327.5_1_6:30312945-30313451:+|nuORF	ENST00000466327.5_1_6:30312945-30313451:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.8134765625	2	534.752121	1067.48969	-0.058812	-3.145E-05	2.8464	0.0015221	2.7876	0.0014907	534.7534641353988	58.544	0.5318	58.544	58.28	58.812	0					24	12	3	0	0	0	0.025748	1	5012	5012		54.776	6.8607	1	909700			6915	12287	5551	5560	8079	8079					-0.0413553730465992
EGGLESVMREL	11	Unmodified	_EGGLESVMREL_					0	0	0			REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40	REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40	MULTI-MSMS	OvCa99_classI_Rep5	1	610.3032836914062	2	610.302995	1218.59144	3.6493	0.0022272	-1.6815	-0.0010262	1.9678	0.001201	610.3018390998741	97.526	0.47189	97.526	97.267	97.738	0					24	10	3	0	0	0	0.5362	1	10729	10729		48.602	16.967	1	1202700	+		6916	19743	5552	5561	8080	8080					-0.009114717877764633
EGGLYRSFGEM	11	Unmodified	_EGGLYRSFGEM_					0	0	0			REV__nc|ENSG00000149782|Q01970-2|PLCB3	REV__nc|ENSG00000149782|Q01970-2|PLCB3	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.2301330566406	3	415.857134	1244.54957	0.17018	7.0771E-05	-2.1842	-0.00090833	-2.0141	-0.00083756	415.85614257584695	38.417	0.49583	38.417	38.254	38.75	0					14	10	2	0	0	0	0.025995	1	2189	2189		23.378	6.2112	1	94672	+		6917	20177	5553	5562	8081	8081					-0.06292027476320072
EGGNIYNEY	9	Unmodified	_EGGNIYNEY_					0	0	0		tr|A0A7D6ZP27|A0A7D6ZP27_9CLOTLipolyticproteinG-D-S-LfamilyOS=ClostridiumintestinaleOX=36845GN=HZF06_18645PE=4SV=1	tr|A0A7D6ZP27|A0A7D6ZP27_9CLOTLipolyticproteinG-D-S-LfamilyOS=ClostridiumintestinaleOX=36845GN=HZF06_18645PE=4SV=1	tr|A0A7D6ZP27|A0A7D6ZP27_9CLOTLipolyticproteinG-D-S-LfamilyOS=ClostridiumintestinaleOX=36845GN=HZF06_18645PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	530.2786865234375	2	529.724904	1057.43525	-0.6112	-0.00032377	1.4724	0.00077997	0.8612	0.0004562	530.2279302658408	95.097	0.4985	93.201	92.813	93.311	-1.8956					12	9	2	0	0	0	0.027462	1	6146	6146		31.53	0	1	16706			6918	35687	5554	5563	8082	8082					-0.0911659396676896
EGGPGAYGAL	10	Unmodified	_EGGPGAYGAL_					0	0	0			REV__ENST00000374825.8_1_6:32940419-32940701:+|nuORF	REV__ENST00000374825.8_1_6:32940419-32940701:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	446.8031921386719	2	446.213975	890.413397	0.96104	0.00042883	-1.342	-0.00059884	-0.381	-0.00017001	446.2133827935853	119.81	1.3347	118.78	117.93	119.27	-1.0271					32	26	2	0	0	0	0.026871	1	9101	9101		21.96	0	1	20335	+		6919	25070	5555	5564	8083	8083					-0.03619353924659663
EGGPHTGPQLL	11	Unmodified	_EGGPHTGPQLL_					0	0	0			REV__ENST00000498794.1_1_3:49053195-49053570:-|nuORF	REV__ENST00000498794.1_1_3:49053195-49053570:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	553.2850952148438	2	553.285463	1104.55637	0.8514	0.00047107	-1.0259	-0.00056763	-0.17453	-9.6563E-05	553.284790859176	109.08	1.8792	108.85	108.22	110.1	-0.22498					106	37	5	0	0	0	0.36705	1	10247	10247		63.534	0	1	452190	+		6920	26801	5556	5565	8084	8084					0.008276534665810686
EGGPSLSGRSL	11	Unmodified	_EGGPSLSGRSL_					0	0	0			REV__SETD5|p.R1157Ifs*12|1|0.41|ENSG00000168137|chr3:9473509-9473521|AGACCTCAAGAGA/-|frameshift_variant	REV__SETD5|p.R1157Ifs*12|1|0.41|ENSG00000168137|chr3:9473509-9473521|AGACCTCAAGAGA/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.3040771484375	2	530.275095	1058.53564	-1.227	-0.00065065	0.98023	0.00051979	-0.24678	-0.00013086	530.2753582595487	51.56	1.3101	48.387	48.022	49.332	-3.1734					53	25	4	0	0	0	0.025822	1	3034	3034		82.75	5.4329	1	141380	+		6921	21349	5557	5566	8085	8085					0.008710630869245506
EGGPSLSGRSL	11	Unmodified	_EGGPSLSGRSL_					0	0	0			REV__SETD5|p.R1157Ifs*12|1|0.41|ENSG00000168137|chr3:9473509-9473521|AGACCTCAAGAGA/-|frameshift_variant	REV__SETD5|p.R1157Ifs*12|1|0.41|ENSG00000168137|chr3:9473509-9473521|AGACCTCAAGAGA/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.275095	1058.53564	-1.9641	-0.0010415	1.5392	0.0008162	-0.42495	-0.00022534	530.275659889661	51.358	0.89291	48.545	48.303	49.196	-2.8129	0.079085	0.00045435	NaN	82.75	25	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26620	+		6922	21349	5557	5566							0.008710630869245506
EGGQLTKKLK	10	Unmodified	_EGGQLTKKLK_					0	0	0		MED1-CLPB|1|fusion;nc|ENSG00000162129|Q9H078-5|CLPB;nc|ENSG00000162129|Q9H078-3|CLPB;nc|ENSG00000162129|Q9H078-4|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB;ENST00000538021.5_2_11:72004413-72018253:-|nuORF	MED1-CLPB|1|fusion	MED1-CLPB|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep3	3	551.7875366210938	2	551.334956	1100.65536	0.82844	0.00045675	2.6297	0.0014499	3.4582	0.0019066	551.3361801134968	111.42	0.94068	110.32	110	110.94	-1.1038					41	18	3	0	0	0	0.026674	1	8095	8095		40.058	0	1	46037			6923	6159	5558	5567	8086	8086					0.10905676431457323
EGGRKTKEQL	10	Unmodified	_EGGRKTKEQL_					0	0	0		tr|A0A7D6VPS5|A0A7D6VPS5_9CLOTPolysaccharidedeacetylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12785PE=4SV=1	tr|A0A7D6VPS5|A0A7D6VPS5_9CLOTPolysaccharidedeacetylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12785PE=4SV=1	tr|A0A7D6VPS5|A0A7D6VPS5_9CLOTPolysaccharidedeacetylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12785PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.330810546875	2	573.317294	1144.62004	-1.0787	-0.00061841	0.23481	0.00013462	-0.84384	-0.00048379	573.3172210051865	34.84	0.37326	34.84	34.679	35.052	0					11	7	2	0	0	0	0.026522	1	1728	1728		75.043	5.4157	1	90304			6924	34793	5559	5568	8087	8087					0.053510139036689
EGGRRVKGL	9	Unmodified	_EGGRRVKGL_					0	0	0			REV__ENST00000373616.9_1_6:36936345-36936543:-|nuORF	REV__ENST00000373616.9_1_6:36936345-36936543:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.2917175292969	2	486.290882	970.567212	-0.28705	-0.00013959	0.22116	0.00010755	-0.065887	-3.204E-05	486.29057557018166	46.777	2.2575	43.705	42.666	44.923	-3.0724					123	43	5	0	0	0	0.53957	1	2510	2510		38.806	3.1879	1	2684900	+		6925	25047	5560	5569	8088	8088					0.08075100631526766
EGGRWPWR	8	Unmodified	_EGGRWPWR_					0	0	0		ENST00000378078.4_1_9:35754407-35754683:+|nuORF	ENST00000378078.4_1_9:35754407-35754683:+|nuORF	ENST00000378078.4_1_9:35754407-35754683:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.7755737304688	2	522.262125	1042.5097	-0.59814	-0.00031238	1.2811	0.00066905	0.68292	0.00035666	522.2633401439393	74.943	0.91631	71.713	71.047	71.963	-3.2308					21	18	2	0	0	0	0.028476	1	5855	5855		23.042	6.3251	1	41612			6926	11100	5561	5570	8089	8089					-0.009857415740725628
EGGSGVGRRRS	11	Unmodified	_EGGSGVGRRRS_					0	0	0		ENST00000578749.5_2_17:27895125-27895269:+|nuORF	ENST00000578749.5_2_17:27895125-27895269:+|nuORF	ENST00000578749.5_2_17:27895125-27895269:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.75732421875	2	559.294685	1116.57482	0.056419	3.1555E-05	-4.0437	-0.0022616	-3.9873	-0.0022301	559.2919962211803	40.502	0.27976	40.502	40.386	40.666	0					9	5	2	0	0	0	0.025466	1	2462	2462		47.96	26.274	1	95267			6927	13972	5562	5571	8090	8090					0.021192081611388858
EGGSSLPKPLL	11	Unmodified	_EGGSSLPKPLL_					0	0	0			REV__nc|ENSG00000158941|Q8N163-2|CCAR2	REV__nc|ENSG00000158941|Q8N163-2|CCAR2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.2682495117188	2	549.313689	1096.61282	2.5327	0.0013912	-2.9526	-0.0016219	-0.4199	-0.00023066	549.3119276510805	135.6	0.7897	134.06	133.76	134.55	-1.5437					27	15	3	0	0	0	0.025806	1	13117	13117		24.519	0	1	22394	+		6928	20589	5563	5572	8091	8091					0.06838281303225813
EGGSVQKLI	9	Unmodified	_EGGSVQKLI_					0	0	0			REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.76806640625	2	465.766374	929.518196	-1.0407	-0.00048471	0.9672	0.00045049	-0.07347	-3.422E-05	465.76665444920326	48.584	1.5033	45.476	45.141	46.644	-3.1077					53	28	2	0	0	0	0.33652	1	2693	2693		58.782	0.55203	1	371410	+		6929	20958	5564	5573	8092	8092					0.05061767551910634
EGGSVQKLI	9	Unmodified	_EGGSVQKLI_					0	0	0			REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MATCH	OvCa9_classI_Rep2	2		2	465.766374	929.518196	-0.82099	-0.00038239	0.80388	0.00037442	-0.017108	-7.9685E-06	465.7666534270824	48.256	1.3418	45.546	45.231	46.573	-2.7097	0.034988	-8.7898E-05	NaN	58.782	44	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88857	+		6930	20958	5564	5573							0.05061767551910634
EGGSVQKLI	9	Unmodified	_EGGSVQKLI_					0	0	0			REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	465.766374	929.518196	-1.0407	-0.00048471	0.9672	0.00045049	-0.07347	-3.422E-05	465.76665444920326	48.584	1.5033	45.476	45.141	46.644	-3.1077	-0.034988	6.4238E-05	NaN	58.782	53	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	371410	+		6931	20958	5564	5573							0.05061767551910634
EGGTLRIKD	9	Unmodified	_EGGTLRIKD_					0	0	0			REV__nc|ENSG00000124615|Q9NZB8-4|MOCS1	REV__nc|ENSG00000124615|Q9NZB8-4|MOCS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.799072265625	2	494.774731	987.534909	-0.8432	-0.0004172	0.25436	0.00012585	-0.58884	-0.00029134	494.77477942435075	39.917	0.81612	39.917	39.756	40.573	0					27	17	2	0	0	0	0.027462	1	2438	2438		20.947	0	1	499640	+		6932	18699	5565	5574	8093	8093					0.040642684378553895
EGGTVVTVLL	10	Unmodified	_EGGTVVTVLL_					0	0	0			REV__nc|ENSG00000211809|A0A087WT01|TRAV27	REV__nc|ENSG00000211809|A0A087WT01|TRAV27	MULTI-MSMS	OvCa9_classI_Rep3	3	494.2919616699219	2	494.289682	986.564812	0.19779	9.7765E-05	-0.30355	-0.00015004	-0.10576	-5.2277E-05	494.28948581364995	106.87	1.7757	105.6	105.32	107.1	-1.267					57	34	2	0	0	0	0.53885	1	7562	7562		49.442	5.3247	1	408670	+		6933	29120	5566	5575	8094	8094					0.07099207383191697
EGGVLSQVL	9	Unmodified	_EGGVLSQVL_					0	0	0		nc|ENSG00000183378|Q7RTZ1|OVCH2;ENSG00000183378|ENST00000533663|OVCH2	nc|ENSG00000183378|Q7RTZ1|OVCH2	nc|ENSG00000183378|Q7RTZ1|OVCH2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	451.77093505859375	2	451.2531	900.491647	0.45669	0.00020608	-0.28072	-0.00012668	0.17596	7.9405E-05	451.2528910806357	109.33	0.82723	107.61	107.33	108.15	-1.7256					25	15	2	0	0	0	0.027455	1	10041	10041		51.335	17.163	1	25045			6934	8071	5567	5576	8095	8095					0.03742078660570769
EGGVPADEVI	10	Unmodified	_EGGVPADEVI_					0	0	0		USP43|p.P814Sfs*46|1|0.22|ENSG00000154914|chr17:9728057-9728058|-/T|frameshift_variant;nc|ENSG00000154914|Q70EL4-4|USP43;ENSG00000154914|ENST00000285199|USP43;nc|ENSG00000154914|Q70EL4-3|USP43	USP43|p.P814Sfs*46|1|0.22|ENSG00000154914|chr17:9728057-9728058|-/T|frameshift_variant	USP43|p.P814Sfs*46|1|0.22|ENSG00000154914|chr17:9728057-9728058|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.32244873046875	2	493.245472	984.476391	0.4761	0.00023483	4.2617	0.0021021	4.7378	0.0023369	493.24824739416	78.58	0.33553	76.84	76.615	76.951	-1.7398					11	6	3	0	0	0	0.026665	1	6579	6579		26.693	14.486	1	17193			6935	5760	5568	5577	8096	8096					-0.016468329272925075
EGGVPADEVI	10	Unmodified	_EGGVPADEVI_					0	0	0		USP43|p.P814Sfs*46|1|0.22|ENSG00000154914|chr17:9728057-9728058|-/T|frameshift_variant;nc|ENSG00000154914|Q70EL4-4|USP43;ENSG00000154914|ENST00000285199|USP43;nc|ENSG00000154914|Q70EL4-3|USP43	USP43|p.P814Sfs*46|1|0.22|ENSG00000154914|chr17:9728057-9728058|-/T|frameshift_variant	USP43|p.P814Sfs*46|1|0.22|ENSG00000154914|chr17:9728057-9728058|-/T|frameshift_variant	MULTI-MATCH	OvCa99_classI_Rep5	1		2	493.245472	984.476391	1.93	0.00095197	0.26019	0.00012834	2.1902	0.0010803	493.2455242525456	76.501	0.51868	76.501	76.28	76.799	0	-0.1696	-0.00013513	NaN	56.721	33	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1723700			6936	5760	5568	5577							-0.016468329272925075
EGGWLPLVG	9	Unmodified	_EGGWLPLVG_					0	0	0		nc|ENSG00000154914|Q70EL4-2|USP43	nc|ENSG00000154914|Q70EL4-2|USP43	nc|ENSG00000154914|Q70EL4-2|USP43	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.7656555175781	2	464.25036	926.486168	-0.78731	-0.00036551	-0.61743	-0.00028664	-1.4047	-0.00065215	464.25010022473924	69.274	0.87737	65.793	65.42	66.297	-3.4812					42	17	3	0	0	0	0.027462	1	5141	5141		25.45	0	1	159740			6937	15108	5569	5578	8097	8097					0.01998399868762135
EGGYYQFVI	9	Unmodified	_EGGYYQFVI_					0	0	0		ENSG00000119913|ENST00000646139|TECTB	ENSG00000119913|ENST00000646139|TECTB	ENSG00000119913|ENST00000646139|TECTB	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.7833862304688	2	538.258382	1074.50221	0.1713	9.2201E-05	-2.8182	-0.0015169	-2.6469	-0.0014247	538.2584977996297	57.56	0.72803	57.56	57.004	57.732	0					26	16	2	0	0	0	0.027462	1	4783	4783		35.618	11.416	1	304970			6938	3401	5570	5579	8098	8098					-0.03205938684982357
EGHLKEILPIA	11	Unmodified	_EGHLKEILPIA_					0	0	0			REV__nc|ENSG00000165732|Q9NR30-2|DDX21	REV__nc|ENSG00000165732|Q9NR30-2|DDX21	MULTI-SECPEP	OvCa9_classI_Rep3	3	406.24578857421875	3	407.239684	1218.69722	2.1384	0.00087083	1.2021	0.00048953	3.3405	0.0013604	407.5745872120025	65.282	0.55798	62.336	61.996	62.554	-2.9459					14	10	2	0	0	0	0.026311	1	2583	2583		10.104	0	1	7868.3	+		6939	21113	5571	5580	8099	8099					0.09662232120012959
EGHLLFFL	8	Unmodified	_EGHLLFFL_					0	0	0			REV__nc|ENSG00000170632|Q8N2F6-6|ARMC10	REV__nc|ENSG00000170632|Q8N2F6-6|ARMC10	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.2989196777344	2	488.268553	974.522553	-0.68796	-0.00033591	2.4503	0.0011964	1.7624	0.0008605	488.26989261811696	63.942	1.0995	61.201	60.377	61.477	-2.7406					30	20	2	0	0	0	0.028476	1	4879	4879		20.482	10.217	1	76431	+		6940	21553	5572	5581	8100	8100					0.03427276765478382
EGHRVLWR	8	Unmodified	_EGHRVLWR_					0	0	0			REV__ENSG00000142632|ENST00000270747|ARHGEF19	REV__ENSG00000142632|ENST00000270747|ARHGEF19	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.8043212890625	2	526.79105	1051.56755	0.30065	0.00015838	-1.6943	-0.00089256	-1.3937	-0.00073418	527.2930262871811	72.156	0.61471	72.156	71.877	72.492	0					20	14	2	0	0	0	0.028476	1	7021	7021		21.96	0	1	171040	+		6941	19798	5573	5582	8101	8101					0.043825203513506494
EGHYFFPLV	9	Unmodified	_EGHYFFPLV_					0	0	0			REV__ENST00000269033.7_1_17:28011698-28030060:-|nuORF	REV__ENST00000269033.7_1_17:28011698-28030060:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.23583984375	2	554.776742	1107.53893	0.94532	0.00052444	-1.2052	-0.00066861	-0.25987	-0.00014417	555.2779347035516	140.02	0.29181	140.02	139.92	140.22	0					6	5	2	0	0	0	0.027462	1	16372	16372		42.474	0	1	43646	+		6942	24059	5574	5583	8102	8102					-0.010536420684275072
EGIIIIDELI	10	Unmodified	_EGIIIIDELI_					0	0	0		tr|A0A7D6ZXZ0|A0A7D6ZXZ0_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00095PE=4SV=1	tr|A0A7D6ZXZ0|A0A7D6ZXZ0_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00095PE=4SV=1	tr|A0A7D6ZXZ0|A0A7D6ZXZ0_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00095PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	564.3316650390625	2	564.331547	1126.64854	-1.0056	-0.0005675	1.6623	0.00093809	0.65669	0.00037059	564.3321744807142	117.4	1.5874	117.27	116.91	118.5	-0.12869					87	31	4	0	0	0	0.55359	1	11241	11241		47.657	6.2307	1	307740			6943	35900	5575	5584	8103	8103					0.0902831876021537
EGIKRKLC	8	Unmodified	_EGIKRKLC_					0	0	0		nc|ENSG00000154263|Q8WWZ4-2|ABCA10;ENSG00000154263|ENST00000690296|ABCA10;ENST00000519732.5_1_17:67144970-67171813:-|nuORF;ENST00000522406.5_1_17:67144970-67178294:-|nuORF;nc|ENSG00000141338|O94911-1|ABCA8;ENSG00000141338|ENST00000586539|ABCA8;ENSG00000154258|ENST00000340001|ABCA9	nc|ENSG00000154263|Q8WWZ4-2|ABCA10;ENSG00000154258|ENST00000340001|ABCA9	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.5515441894531	2	473.778762	945.542971	-0.38777	-0.00018372	0.6037	0.00028602	0.21594	0.00010231	473.77879192493566	38.486	2.1657	38.486	37.298	39.463	0					72	47	2	0	0	0	0.028476	1	2069	2069		12.959	0	1	52079			6944	5725;5723	5576	5585	8104	8104					0.06802124153625755
EGIKSARRL	9	Unmodified	_EGIKSARRL_					0	0	0			REV__CCNB1|p.G359Afs*3|1|0.03|ENSG00000134057|chr5:69175529-69175530|-/CTCT|frameshift_variant	REV__CCNB1|p.G359Afs*3|1|0.03|ENSG00000134057|chr5:69175529-69175530|-/CTCT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	515.3109741210938	2	515.311815	1028.60908	-2.0827	-0.0010732	1.7149	0.00088368	-0.36786	-0.00018956	515.312623228854	35.485	1.3896	32.775	32.503	33.893	-2.7097					66	27	3	0	0	0	0.69123	1	1480	1480		20.947	0.10978	1	694720	+		6945	15753	5577	5586	8105	8105					0.09591656320048969
EGIKYVYI	8	Unmodified	_EGIKYVYI_					0	0	0			REV__IFT172|p.R1483Sfs*10|1|0.16|ENSG00000138002|chr2:27447902-27447903|-/ACTGCAAGCTCCGCTTCCCGGGTTCA|frameshift_variant	REV__IFT172|p.R1483Sfs*10|1|0.16|ENSG00000138002|chr2:27447902-27447903|-/ACTGCAAGCTCCGCTTCCCGGGTTCA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.30377197265625	2	492.773668	983.532783	-0.69308	-0.00034153	0.57687	0.00028426	-0.11621	-5.7266E-05	492.7737354752735	106.56	0.92841	104.56	104.07	105	-1.994					41	17	3	0	0	0	0.028476	1	9743	9743		38.806	8.3025	1	73618	+		6946	19500	5578	5587	8106	8106					0.04035839700043198
EGILVVKFVF	10	Unmodified	_EGILVVKFVF_					0	0	0			REV__ENST00000463614.1_1_1:156031167-156035898:+|nuORF	REV__ENST00000463614.1_1_1:156031167-156035898:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8433837890625	2	575.847167	1149.67978	-4.018	-0.0023138	-2.943	-0.0016947	-6.9609	-0.0040084	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.78463	1	12068	12068		20.947	1.8434	1	445630	+		6947	19099	5579	5588	8107	8107					0.11092936584987001
EGIQPQVII	9	Unmodified	_EGIQPQVII_					0	0	0		ENST00000300087.6_1_16:23680444-23680882:+|nuORF	ENST00000300087.6_1_16:23680444-23680882:+|nuORF	ENST00000300087.6_1_16:23680444-23680882:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.7898254394531	2	498.78985	995.565146	-0.69611	-0.00034721	0.14781	7.3725E-05	-0.5483	-0.00027349	498.7898766980179	115.24	3.0674	115.12	114.7	117.77	-0.11777					207	61	7	0	0	0	0.27001	1	11077	11077		66.429	0	1	2910400			6948	10169	5580	5589	8108	8108					0.06718627103043673
EGKAFKKL	8	Unmodified	_EGKAFKKL_					0	0	0		tr|A0A7D6ZHM4|A0A7D6ZHM4_9CLOTParB/RepB/Spo0JfamilypartitionproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23955PE=3SV=1	tr|A0A7D6ZHM4|A0A7D6ZHM4_9CLOTParB/RepB/Spo0JfamilypartitionproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23955PE=3SV=1	tr|A0A7D6ZHM4|A0A7D6ZHM4_9CLOTParB/RepB/Spo0JfamilypartitionproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23955PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	461.2568664550781	2	460.781828	919.549102	-1.1393	-0.00052498	1.5288	0.00070443	0.38945	0.00017945	460.78211564417893	69.984	0.29114	69.984	69.798	70.089	0					11	6	2	0	0	0	0.028476	1	6697	6697		79.939	24.435	1	104600			6949	35581	5581	5590	8109	8109					0.08610965656805547
EGKELMQDGAS	11	Unmodified	_EGKELMQDGAS_					0	0	0		ENSG00000205189|ENST00000455036|ZBTB10;nc|ENSG00000205189|Q96DT7-2|ZBTB10	ENSG00000205189|ENST00000455036|ZBTB10	ENSG00000205189|ENST00000455036|ZBTB10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	582.313232421875	2	582.763703	1163.51285	-0.081114	-4.7271E-05	-2.2364	-0.0013033	-2.3176	-0.0013506	582.762319706402	89.716	1.1551	87.141	86.801	87.956	-2.575					33	22	2	0	0	0	0.026007	1	7750	7750		24.519	0	1	47790			6950	9057	5582	5591	8110	8110					-0.062363240928561936
EGKEWKVY	8	Unmodified	_EGKEWKVY_					0	0	0			REV__tr|A0A7D6VXR8|A0A7D6VXR8_9CLOTdiphosphomevalonatedecarboxylaseOS=ClostridiumintestinaleOX=36845GN=mvaDPE=3SV=1	REV__tr|A0A7D6VXR8|A0A7D6VXR8_9CLOTdiphosphomevalonatedecarboxylaseOS=ClostridiumintestinaleOX=36845GN=mvaDPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.8096923828125	2	519.766374	1037.5182	-0.037869	-1.9683E-05	2.374	0.0012339	2.3361	0.0012142	519.767353582727	109.71	0.79075	108.11	107.75	108.54	-1.6011					17	14	2	0	0	0	0.028476	1	10120	10120		12.959	0	1	14868	+		6951	31788	5583	5592	8111	8111					0.0009376755190260155
EGKLKAAKK	9	Unmodified	_EGKLKAAKK_					0	0	0		nc|ENSG00000213213|Q5T5S1-2|CCDC183;ENSG00000213213|ENST00000338005|CCDC183;ENST00000484858.1_1_9:139701238-139702139:+|nuORF;ENST00000481601.5_1_9:139700881-139702139:+|nuORF	nc|ENSG00000213213|Q5T5S1-2|CCDC183	nc|ENSG00000213213|Q5T5S1-2|CCDC183	MULTI-MSMS	OvCa9_classI_Rep2	2	486.8132019042969	2	486.813659	971.612765	-0.51721	-0.00025178	0.25856	0.00012587	-0.25865	-0.00012592	486.8136606093423	57.145	2.3904	54.353	53.634	56.024	-2.792					128	47	4	0	0	0	0.3076	1	4105	4105		62.107	3.3255	1	495540			6952	9122	5584	5593	8112	8112					0.12582326093888696
EGKLLKRA	8	Unmodified	_EGKLLKRA_					0	0	0		ENSG00000116668|ENST00000367500|SWT1	ENSG00000116668|ENST00000367500|SWT1	ENSG00000116668|ENST00000367500|SWT1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	457.75677490234375	2	457.792727	913.5709	-1.7929	-0.00082077	1.5264	0.00069878	-0.26646	-0.00012198	457.7932295598085	49.987	0.88531	46.846	46.558	47.444	-3.1416					27	16	2	0	0	0	0.028476	1	2831	2831		58.782	7.4465	1	18411			6953	3192	5585	5594	8113	8113					0.11065770405366493
EGKLVKNVP	9	Unmodified	_EGKLVKNVP_					0	0	0			REV__nc|ENSG00000140992|O15530-4|PDPK1	REV__nc|ENSG00000140992|O15530-4|PDPK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.2956848144531	2	492.297842	982.581131	0.90705	0.00044654	-0.93281	-0.00045922	-0.025766	-1.2685E-05	492.29703433887414	114.12	0.45837	112.67	112.43	112.89	-1.4461					16	8	2	0	0	0	0.027461	1	10613	10613		40.778	5.6261	1	19569	+		6954	19712	5586	5595	8114	8114					0.08914333339942004
EGKLVKNVP	9	Unmodified	_EGKLVKNVP_					0	0	0			REV__nc|ENSG00000140992|O15530-4|PDPK1	REV__nc|ENSG00000140992|O15530-4|PDPK1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	492.297842	982.581131	0.32819	0.00016157	-1.3555	-0.00066731	-1.0273	-0.00050574	492.2969917667588	113.81	0.82907	112.73	112.45	113.28	-1.0753	0.031658	-0.00013899	NaN	40.778	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16755	+		6955	19712	5586	5595							0.08914333339942004
EGKNLRKP	8	Unmodified	_EGKNLRKP_					0	0	0		ENST00000505443.1_1_5:3422621-3535901:-|nuORF	ENST00000505443.1_1_5:3422621-3535901:-|nuORF	ENST00000505443.1_1_5:3422621-3535901:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	471.77825927734375	2	471.279983	940.545414	-0.083464	-3.9335E-05	-1.0656	-0.00050219	-1.1491	-0.00054153	471.27973415532745	35.683	1.6548	35.683	35.052	36.707	0					66	35	5	0	0	0	0.66057	1	1796	1796		51.335	1.7994	1	4596800			6956	12894	5587	5596	8115	8115					0.0727629588294576
EGKRCESVK	9	Unmodified	_EGKRCESVK_					0	0	0			REV__tr|A0A7D6VT64|A0A7D6VT64_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06820PE=4SV=1	REV__tr|A0A7D6VT64|A0A7D6VT64_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06820PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.2421264648438	2	518.266216	1034.51788	-0.81714	-0.0004235	0.9135	0.00047343	0.096357	4.9938E-05	518.2666427910239	65.313	0.79663	65.313	65.034	65.831	0					51	19	3	0	0	0	0.027462	1	5976	5976		44.117	14.967	1	775660	+		6957	31576	5588	5597	8116	8116					0.002000245603994699
EGKRRRWWWQR	11	Unmodified	_EGKRRRWWWQR_					0	0	0			REV__ENST00000296754.7_2_5:96139638-96143632:-|nuORF	REV__ENST00000296754.7_2_5:96139638-96143632:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	548.9677124023438	3	548.630791	1642.87055	-0.084086	-4.6132E-05	4.3687	0.0023968	4.2846	0.0023506	548.6332874572265	31.832	2.216	31.832	31.608	33.824	0					83	44	2	0	0	0	0.72582	1	1331	1331		0.37141	0.03091	1	6350300	+		6958	24206	5589	5598	8117	8117					0.07482455739614124
EGKSPIIAI	9	Unmodified	_EGKSPIIAI_					0	0	0			REV__tr|A0A553SSS1|A0A553SSS1_NIACIPTSbeta-glucosidetransportersubunitIIBCAOS=NialliacirculansOX=1397GN=CEQ21_03605PE=4SV=1	REV__tr|A0A553SSS1|A0A553SSS1_NIACIPTSbeta-glucosidetransportersubunitIIBCAOS=NialliacirculansOX=1397GN=CEQ21_03605PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	464.2772521972656	2	464.279118	926.543683	-0.62562	-0.00029046	-2.8963	-0.0013447	-3.5219	-0.0016351	464.27769408373126	35.076	0.42919	35.076	34.864	35.293	0					14	8	2	0	0	0	0.16562	1	1751	1751		82.241	5.4664	1	820490	+		6959	30870	5590	5599	8118	8118					0.07747242074310634
EGKVQVSVL	9	Unmodified	_EGKVQVSVL_					0	0	0		ENSG00000130707|ENST00000352480|ASS1;ENST00000372386.6_1_9:133355254-133376405:+|nuORF	ENSG00000130707|ENST00000352480|ASS1	ENSG00000130707|ENST00000352480|ASS1	MULTI-MSMS	OvCa9_classI_Rep2	2	479.7829895019531	2	479.782025	957.549496	-1.4095	-0.00067624	0.88818	0.00042613	-0.5213	-0.00025011	479.7826892392015	84.442	1.5122	82.896	82.43	83.943	-1.5462					96	29	5	0	0	0	0.22035	1	7261	7261		72.879	0	1	364700			6960	4002	5591	5600	8119	8119					0.06902340586009359
EGLACVGVRK	10	Unmodified	_EGLACVGVRK_					0	0	0		ENST00000560901.5_1_14:24584114-24586206:+|nuORF;ENST00000559382.5_2_14:24584130-24586206:+|nuORF;ENST00000557802.5_1_14:24584825-24587275:+|nuORF	ENST00000560901.5_1_14:24584114-24586206:+|nuORF	ENST00000560901.5_1_14:24584114-24586206:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.2615356445312	2	516.286951	1030.55935	-0.71983	-0.00037164	-2.4704	-0.0012755	-3.1903	-0.0016471	516.788865558849	56.103	0.14885	53.299	53.175	53.324	-2.804					4	2	2	0	0	0	0.027088	1	3924	3924		34.173	21.213	1	6146.3			6961	13687	5592	5601	8120	8120					0.04529205319727225
EGLDLGMPTN	10	Unmodified	_EGLDLGMPTN_					0	0	0			REV__tr|A0A553SLD8|A0A553SLD8_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_20445PE=4SV=1	REV__tr|A0A553SLD8|A0A553SLD8_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_20445PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.279052734375	2	523.744782	1045.47501	-0.41299	-0.0002163	1.1095	0.0005811	0.69653	0.0003648	523.745285206742	75.869	0.98466	74.015	73.586	74.571	-1.854					26	18	2	0	0	0	0.026523	1	6270	6270		44.377	8.7589	1	13954	+		6962	30213	5593	5602	8121	8121					-0.04590790287670643
EGLETQKDKI	10	Unmodified	_EGLETQKDKI_					0	0	0			REV__ENSG00000123066|ENST00000281928|MED13L	REV__ENSG00000123066|ENST00000281928|MED13L	MULTI-MSMS	OvCa99_classI_Rep5	1	580.8120727539062	2	580.81151	1159.60847	-0.70806	-0.00041125	0.29641	0.00017216	-0.41166	-0.0002391	580.811668185535	48.87	0.53322	48.87	48.63	49.164	0					34	11	4	0	0	0	0.25842	1	3614	3614		85.862	4.3368	1	966270	+		6963	18621	5594	5603	8122	8122					0.035047720896727697
EGLETQKDKI	10	Unmodified	_EGLETQKDKI_					0	0	0			REV__ENSG00000123066|ENST00000281928|MED13L	REV__ENSG00000123066|ENST00000281928|MED13L	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	580.81151	1159.60847	-0.70806	-0.00041125	0.29641	0.00017216	-0.41166	-0.0002391	580.811668185535	48.87	0.53322	48.87	48.63	49.164	0	0	0	NaN	85.862	34	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	966270	+		6964	18621	5594	5603							0.035047720896727697
EGLEWVLIS	9	Unmodified	_EGLEWVLIS_					0	0	0		tr|A0A553SLA9|A0A553SLA9_NIACIUPF0398proteinCEQ21_20285OS=NialliacirculansOX=1397GN=CEQ21_20285PE=3SV=1	tr|A0A553SLA9|A0A553SLA9_NIACIUPF0398proteinCEQ21_20285OS=NialliacirculansOX=1397GN=CEQ21_20285PE=3SV=1	tr|A0A553SLA9|A0A553SLA9_NIACIUPF0398proteinCEQ21_20285OS=NialliacirculansOX=1397GN=CEQ21_20285PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	523.2822265625	2	523.281857	1044.54916	-0.48449	-0.00025352	-3.3115	-0.0017328	-3.796	-0.0019864	523.2801587792262	73.496	1.3298	73.496	72.994	74.324	0					121	33	6	0	0	0	0.24951	1	7186	7186		68.787	8.6686	1	117510000			6965	33705	5595	5604	8123	8123					0.028669208661540324
EGLFKLEKQI	10	Unmodified	_EGLFKLEKQI_					0	0	0			REV__tr|A0A7D7A5A1|A0A7D7A5A1_9CLOTPhosphoglyceratekinaseOS=ClostridiumintestinaleOX=36845GN=pgkPE=3SV=1	REV__tr|A0A7D7A5A1|A0A7D7A5A1_9CLOTPhosphoglyceratekinaseOS=ClostridiumintestinaleOX=36845GN=pgkPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	402.23468017578125	3	402.236051	1203.68632	0.66727	0.0002684	-2.6251	-0.0010559	-1.9578	-0.0007875	402.23498191300394	33.966	0.57591	33.966	33.728	34.304	0					32	11	4	0	0	0	0.55109	1	1602	1602		47.96	2.9373	1	905770	+		6966	32632	5596	5605	8124	8124					0.09262829745716772
EGLHPKTLS	9	Unmodified	_EGLHPKTLS_					0	0	0		L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|35|2|sense	L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|35|2|sense	L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|35|2|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.2547302246094	2	491.271824	980.529095	-1.4629	-0.00071867	0.24288	0.00011932	-1.22	-0.00059935	491.27181309392944	88.596	0.85226	85.994	85.679	86.532	-2.6027					30	16	2	0	0	0	0.027448	1	7582	7582		44.117	0	1	159220			6967	14585	5597	5606	8125	8125					0.03805169926192775
EGLHPKTLS	9	Unmodified	_EGLHPKTLS_					0	0	0		L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|35|2|sense	L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|35|2|sense	L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|35|2|sense	MULTI-MATCH	OvCa99_classI_Rep5	1		2	491.271824	980.529095	2.2492	0.001105	4.2983	0.0021116	6.5475	0.0032166	491.27384253206503	86.173	0.31631	86.173	86.073	86.389	0	0.11361	0.0021906	NaN	35.618	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164950			6968	14585	5597	5606							0.03805169926192775
EGLHPKTLS	9	Unmodified	_EGLHPKTLS_					0	0	0		L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|35|2|sense	L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|35|2|sense	L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|35|2|sense	MULTI-MATCH	OvCa9_classI_Rep3	3		2	491.271824	980.529095	-0.84909	-0.00041713	0.23636	0.00011611	-0.61273	-0.00030102	491.27174662759916	88.143	0.86488	86.012	85.597	86.461	-2.1309	-0.04777	-0.0018005	NaN	35.618	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184290			6969	14585	5597	5606							0.03805169926192775
EGLKKFVPK	9	Unmodified	_EGLKKFVPK_					0	0	0			REV__tr|A0A553SPG1|A0A553SPG1_NIACIYkyB-likeproteinOS=NialliacirculansOX=1397GN=CEQ21_26310PE=4SV=1	REV__tr|A0A553SPG1|A0A553SPG1_NIACIYkyB-likeproteinOS=NialliacirculansOX=1397GN=CEQ21_26310PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.277099609375	2	523.32386	1044.63317	0.85749	0.00044874	-3.3047	-0.0017294	-2.4472	-0.0012807	523.3220407985889	41.204	0.9849	38.495	38.192	39.177	-2.7097					30	19	2	0	0	0	0.027462	1	2146	2146		38.806	0	1	24978	+		6970	30532	5598	5607	8126	8126					0.1126349675369056
EGLLIVLPTL	10	Unmodified	_EGLLIVLPTL_					0	0	0			REV__ENSG00000172940|ENST00000311856|SLC22A13	REV__ENSG00000172940|ENST00000311856|SLC22A13	MULTI-SECPEP	OvCa9_classI_Rep2	2	535.3333129882812	2	534.339175	1066.6638	-1.4364	-0.00076752	-1.6077	-0.00085908	-3.0441	-0.0016266	534.3383773928265	76.941	1.2524	75.151	74.894	76.147	-1.7894					56	23	3	0	0	0	0.027174	1	6487	6487		9.7057	0	1	112190	+		6971	21737	5599	5608	8127	8127					0.1331323034808065
EGLLYFAG	8	Unmodified	_EGLLYFAG_					0	0	0			REV__ADAMTS1|p.V753Efs*8|1|0.15|ENSG00000154734|chr21:26838225-26838226|-/GAGGGCTAAAGCTGCGAATT|frameshift_variant	REV__ADAMTS1|p.V753Efs*8|1|0.15|ENSG00000154734|chr21:26838225-26838226|-/GAGGGCTAAAGCTGCGAATT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	435.2271728515625	2	435.223811	868.433069	3.4657	0.0015083	-0.73508	-0.00031993	2.7306	0.0011884	435.22340259175377	87.913	0.75558	87.913	87.671	88.426	0					35	17	3	0	0	0	0.69415	1	9324	9324		44.531	2.0566	1	1930000	+		6972	15564	5600	5609	8128	8128					-0.006409779139062266
EGLNRTGIP	9	Unmodified	_EGLNRTGIP_					0	0	0			REV__ENST00000284240.9_1_11:119289572-119289773:-|nuORF	REV__ENST00000284240.9_1_11:119289572-119289773:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.7779846191406	2	478.761623	955.508694	-0.63457	-0.00030381	-0.26749	-0.00012806	-0.90206	-0.00043187	478.76133599563383	74.071	0.73567	72.1	71.745	72.481	-1.9711					21	13	2	0	0	0	0.027185	1	6051	6051		82.241	18.707	1	27112	+		6973	24126	5601	5610	8129	8129					0.029159992663721823
EGLPALRRSL	10	Unmodified	_EGLPALRRSL_					0	0	0			REV__ENST00000528790.1_1_11:128676959-128680880:+|nuORF	REV__ENST00000528790.1_1_11:128676959-128680880:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	556.3341064453125	2	556.332747	1110.65094	0.57108	0.00031771	-1.0549	-0.00058687	-0.48381	-0.00026916	556.3321178865446	64.102	1.1198	60.627	60.298	61.417	-3.475					73	22	4	0	0	0	0.50999	1	4541	4541		52.937	6.9645	1	983800	+		6974	27175	5602	5611	8130	8130					0.10004212008561808
EGLRNQELN	9	Unmodified	_EGLRNQELN_					0	0	0		nc|ENSG00000163935|Q9UHJ3-2|SFMBT1;ENSG00000163935|ENST00000394752|SFMBT1	nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.7684936523438	2	536.772719	1071.53089	1.9232	0.0010323	-3.4829	-0.0018695	-1.5597	-0.00083718	536.7706873133351	112.7	0.63148	112.7	112.52	113.15	0					20	13	2	0	0	0	0.22035	1	12840	12840		72.879	7.4139	1	436390			6975	6381	5603	5612	8131	8131					-0.002018210558617284
EGLSFIELN	9	Unmodified	_EGLSFIELN_					0	0	0		ENST00000397524.5_2_20:34047855-34047918:+|nuORF	ENST00000397524.5_2_20:34047855-34047918:+|nuORF	ENST00000397524.5_2_20:34047855-34047918:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.31268310546875	2	511.263665	1020.51278	-0.17204	-8.7956E-05	0.032286	1.6506E-05	-0.13975	-7.145E-05	511.2633875488117	61.149	0.38891	61.149	60.943	61.332	0					14	8	2	0	0	0	0.027461	1	5376	5376		40.778	11.629	1	321120			6976	11347	5604	5613	8132	8132					0.0033404396941705272
EGLSQQTARL	10	Unmodified	_EGLSQQTARL_					0	0	0			REV__nc|ENSG00000080845|Q9Y2H0-1|DLGAP4	REV__nc|ENSG00000080845|Q9Y2H0-1|DLGAP4	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.7992553710938	2	551.796195	1101.57784	0.25849	0.00014263	2.75	0.0015175	3.0085	0.0016601	551.7979283258665	90.236	1.324	87.661	87.248	88.572	-2.575					71	25	4	0	0	0	0.26424	1	7768	7768		85.161	10.118	1	442220	+		6977	17060	5605	5614	8133	8133					0.031110384952853565
EGLSQQTARL	10	Unmodified	_EGLSQQTARL_					0	0	0			REV__nc|ENSG00000080845|Q9Y2H0-1|DLGAP4	REV__nc|ENSG00000080845|Q9Y2H0-1|DLGAP4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	551.796195	1101.57784	2.4091	0.0013293	0.36344	0.00020054	2.7725	0.0015299	551.7965912466802	89.126	1.3339	87.758	87.231	88.565	-1.3676	0.028724	-0.0022234	NaN	85.161	77	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	237600	+		6978	17060	5605	5614							0.031110384952853565
EGLSQQTARL	10	Unmodified	_EGLSQQTARL_					0	0	0			REV__nc|ENSG00000080845|Q9Y2H0-1|DLGAP4	REV__nc|ENSG00000080845|Q9Y2H0-1|DLGAP4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	551.796195	1101.57784	-1.0013	-0.00055253	3.8658	0.0021331	2.8645	0.0015806	551.7984869147142	89.85	1.5855	87.769	87.288	88.873	-2.0805	0.039441	0.0016418	NaN	85.161	74	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	508350	+		6979	17060	5605	5614							0.031110384952853565
EGLTIANVI	9	Unmodified	_EGLTIANVI_					0	0	0		tr|A0A7D6VNC4|A0A7D6VNC4_9CLOTProbablelipidIIflippaseMurJOS=ClostridiumintestinaleOX=36845GN=murJPE=3SV=1	tr|A0A7D6VNC4|A0A7D6VNC4_9CLOTProbablelipidIIflippaseMurJOS=ClostridiumintestinaleOX=36845GN=murJPE=3SV=1	tr|A0A7D6VNC4|A0A7D6VNC4_9CLOTProbablelipidIIflippaseMurJOS=ClostridiumintestinaleOX=36845GN=murJPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.264404296875	2	465.26875	928.522947	-0.89674	-0.00041723	2.207	0.0010269	1.3103	0.00060963	465.2688602005695	71.153	0.63484	67.697	67.44	68.074	-3.4563					26	12	3	0	0	0	0.027402	1	5429	5429		56.721	14.325	1	37214			6980	34692	5606	5615	8134	8134					0.055826516946467564
EGLTIANVI	9	Unmodified	_EGLTIANVI_					0	0	0		tr|A0A7D6VNC4|A0A7D6VNC4_9CLOTProbablelipidIIflippaseMurJOS=ClostridiumintestinaleOX=36845GN=murJPE=3SV=1	tr|A0A7D6VNC4|A0A7D6VNC4_9CLOTProbablelipidIIflippaseMurJOS=ClostridiumintestinaleOX=36845GN=murJPE=3SV=1	tr|A0A7D6VNC4|A0A7D6VNC4_9CLOTProbablelipidIIflippaseMurJOS=ClostridiumintestinaleOX=36845GN=murJPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	465.26875	928.522947	-0.030987	-1.4417E-05	3.3536	0.0015603	3.3226	0.0015459	465.27031318424247	70.262	0.90027	67.691	67.214	68.114	-2.5707	-0.016646	0.0022375	NaN	56.721	21	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17542			6981	34692	5606	5615							0.055826516946467564
EGLVKITVL	9	Unmodified	_EGLVKITVL_					0	0	0			REV__ENST00000367256.9_1_6:152443573-152639413:-|nuORF	REV__ENST00000367256.9_1_6:152443573-152639413:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.288818359375	2	486.310418	970.606283	-0.10115	-4.9192E-05	-2.0266	-0.00098558	-2.1278	-0.0010348	486.3087996543987	95.308	0.1977	94.28	94.12	94.318	-1.0281					5	3	2	0	0	0	0.027418	1	8553	8553		68.787	5.4806	1	16584	+		6982	24893	5607	5616	8135	8135					0.11980388142512766
EGMQREGPLRV	11	Unmodified	_EGMQREGPLRV_					0	0	0			REV__ENST00000484214.1_1_1:156263748-156265436:-|nuORF	REV__ENST00000484214.1_1_1:156263748-156265436:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	636.3300170898438	2	636.329879	1270.6452	-1.733	-0.0011028	-1.0567	-0.00067244	-2.7898	-0.0017752	636.329149190994	88.48	1.0979	85.877	85.578	86.676	-2.6027					63	21	4	0	0	0	0.54114	1	7551	7551		50.034	0	1	464800	+		6983	26545	5608	5617	8136	8136					0.020707454345711085
EGMQREGPLRV	11	Unmodified	_EGMQREGPLRV_					0	0	0			REV__ENST00000484214.1_1_1:156263748-156265436:-|nuORF	REV__ENST00000484214.1_1_1:156263748-156265436:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	636.329879	1270.6452	0.33483	0.00021307	-3.4431	-0.0021909	-3.1082	-0.0019779	636.3275761336998	87.401	1.1326	85.97	85.593	86.726	-1.4311	0.026939	-0.0014025	NaN	50.034	67	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240280	+		6984	26545	5608	5617							0.020707454345711085
EGMRPVAAEI	10	Oxidation (M)	_EGM(Oxidation (M))RPVAAEI_		EGM(1)RPVAAEI		EGM(56)RPVAAEI	0	0	1		ENST00000602591.1_1_6:30256646-30256907:-|nuORF	ENST00000602591.1_1_6:30256646-30256907:-|nuORF	ENST00000602591.1_1_6:30256646-30256907:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	545.2728271484375	2	544.773874	1087.53319	2.3085	0.0012576	-2.0947	-0.0011411	0.21383	0.00011649	544.7739374019363	84.294	1.0829	84.294	83.921	85.004	0					67	25	4	0	0	0	0.48398	1	8819	8819		56.434	10.482	1	3453300			6985	14244	5609	5618	8137	8137		356			-0.007071086424275563
EGNGTKPAGEP	11	Unmodified	_EGNGTKPAGEP_					0	0	0		ENST00000529262.5_1_6:135518089-135539115:+|nuORF;nc|ENSG00000118513|P10242-8|MYB;nc|ENSG00000118513|P10242-7|MYB;ENSG00000118513|ENST00000341911|MYB	ENST00000529262.5_1_6:135518089-135539115:+|nuORF	ENST00000529262.5_1_6:135518089-135539115:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	528.7526245117188	2	528.751453	1055.48835	0.69418	0.00036705	-4.2388	-0.0022413	-3.5446	-0.0018742	528.7490301574554	139.93	3.5152	139.93	139.32	142.83	0					142	71	3	0	0	0	0.68399	1	16491	16491		35.152	2.3396	1	525790			6986	3312	5610	5619	8138	8138					-0.03717216184099925
EGNKFAVVSP	10	Unmodified	_EGNKFAVVSP_					0	0	0			REV__tr|A0A553SKN5|A0A553SKN5_NIACIChaperoneproteinDnaKOS=NialliacirculansOX=1397GN=dnaKPE=2SV=1	REV__tr|A0A553SKN5|A0A553SKN5_NIACIChaperoneproteinDnaKOS=NialliacirculansOX=1397GN=dnaKPE=2SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.2769165039062	2	524.277106	1046.53966	-1.4064	-0.00073734	0.69358	0.00036363	-0.71282	-0.00037371	524.2773318859194	41.29	2.6423	38.309	37.763	40.405	-2.9804					91	50	4	0	0	0	0.42082	1	1869	1869		65.465	8.7443	1	1482900	+		6987	30140	5611	5620	8139	8139					0.018251525806363134
EGNPLIHLS	9	Unmodified	_EGNPLIHLS_					0	0	0			REV__ENST00000537020.5_1_1:222900596-222902147:+|nuORF	REV__ENST00000537020.5_1_1:222900596-222902147:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.8047180175781	2	490.263999	978.513445	0.042694	2.0932E-05	2.7629	0.0013545	2.8056	0.0013755	490.2650793287561	58.419	0.90224	55.027	54.651	55.553	-3.392					23	17	2	0	0	0	0.027433	1	3867	3867		51.335	10.557	1	38535	+		6988	27306	5612	5621	8140	8140					0.023328834091557837
EGPESGGAILI	11	Unmodified	_EGPESGGAILI_					0	0	0		nc|ENSG00000085433|O94967-2|WDR47;ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47	nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.7752075195312	2	521.774396	1041.53424	-0.58747	-0.00030653	0.15279	7.9719E-05	-0.43469	-0.00022681	521.7744110765533	74.659	1.2063	71.428	71.047	72.253	-3.2308					57	24	4	0	0	0	0.67529	1	5843	5843		37.812	0.65241	1	462690			6989	1729	5613	5622	8141	8141					0.015134289981688198
EGPESGGAILI	11	Unmodified	_EGPESGGAILI_					0	0	0		nc|ENSG00000085433|O94967-2|WDR47;ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47	nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.774396	1041.53424	0.030224	1.577E-05	-0.48671	-0.00025395	-0.45648	-0.00023818	521.7740749472981	73.633	1.3099	71.233	70.585	71.895	-2.3999	-0.097292	-0.00019947	NaN	37.812	49	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93016			6990	1729	5613	5622							0.015134289981688198
EGPFNPVP	8	Unmodified	_EGPFNPVP_					0	0	0			REV__ENST00000307078.9_2_17:63554322-63554508:-|nuORF	REV__ENST00000307078.9_2_17:63554322-63554508:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	429.56365966796875	2	428.713611	855.412668	1.7	0.00072883	-2.9882	-0.0012811	-1.2881	-0.00055224	428.71218781086714	86.449	1.5426	83.822	83.562	85.105	-2.6269					64	30	3	0	0	0	0.028476	1	7348	7348		47.916	5.4411	1	411090	+		6991	24302	5614	5623	8142	8142					-0.02082148573708764
EGPLLRWLK	9	Unmodified	_EGPLLRWLK_					0	0	0		ENSG00000143882|ENST00000272238|ATP6V1C2	ENSG00000143882|ENST00000272238|ATP6V1C2	ENSG00000143882|ENST00000272238|ATP6V1C2	MULTI-MSMS	OvCa9_classI_Rep2	2	556.3321533203125	2	556.334759	1110.65496	-1.0893	-0.00060602	-2.6392	-0.0014683	-3.7286	-0.0020743	556.3331757920065	63.228	1.4184	60.484	59.899	61.318	-2.7444					83	26	4	0	0	0	0.53957	2	4782	4782;4789		38.806	4.3467	1	398240			6992	5105	5615	5624	8143;8144	8143					0.1040630150225752
EGPNGQRGRA	10	Unmodified	_EGPNGQRGRA_					0	0	0			REV__ENST00000565963.5_1_16:2570411-2570947:+|nuORF	REV__ENST00000565963.5_1_16:2570411-2570947:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.3172607421875	2	521.262853	1040.51115	-0.27017	-0.00014083	1.8474	0.00096297	1.5772	0.00082214	521.7656597789119	57.768	0.14967	54.976	54.873	55.022	-2.792					4	2	2	0	0	0	0.026867	1	4129	4129		51.193	5.2407	1	5079	+		6993	27693	5616	5625	8145	8145					-0.007481522759462678
EGPRHLVVE	9	Unmodified	_EGPRHLVVE_					0	0	0			REV__nc|ENSG00000169220|O43566-5|RGS14	REV__nc|ENSG00000169220|O43566-5|RGS14	MULTI-MSMS	OvCa9_classI_Rep2	2	518.2817993164062	2	518.282723	1034.55089	0.26729	0.00013853	-0.81508	-0.00042244	-0.54778	-0.00028391	518.2822567889135	66.733	2.873	64.037	63.567	66.44	-2.6958					124	57	4	0	0	0	0.28934	1	5181	5181		64.207	11.271	1	1284900	+		6994	21444	5617	5626	8146	8146					0.03499974674764417
EGPRLKLNL	9	Unmodified	_EGPRLKLNL_					0	0	0			REV__ENSG00000102452|ENST00000251127|NALCN	REV__ENSG00000102452|ENST00000251127|NALCN	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2998046875	2	520.316566	1038.61858	1.9861	0.0010334	3.0743	0.0015996	5.0604	0.002633	520.3181413124607	86.796	0.33551	86.796	86.553	86.888	0					14	7	3	0	0	0	0.027441	1	9156	9156		58.782	11.125	1	357920	+		6995	17557	5618	5627	8147	8147					0.10081424605550637
EGPRLKLNL	9	Unmodified	_EGPRLKLNL_					0	0	0			REV__ENSG00000102452|ENST00000251127|NALCN	REV__ENSG00000102452|ENST00000251127|NALCN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	520.316566	1038.61858	1.9834	0.001032	4.2737	0.0022237	6.2571	0.0032557	520.3184803507307	88.492	0.39195	87.125	86.888	87.28	-1.3676	0.16464	0.00044072	NaN	58.782	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14269	+		6996	17557	5618	5627							0.10081424605550637
EGPTHSTFTF	10	Unmodified	_EGPTHSTFTF_					0	0	0			REV__ENST00000505521.1_1_5:177019550-177020791:+|nuORF	REV__ENST00000505521.1_1_5:177019550-177020791:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	562.2574462890625	2	562.256371	1122.49819	3.3665	0.0018928	-1.0311	-0.00057972	2.3354	0.0013131	562.2557164633373	90.084	0.89394	90.084	89.804	90.698	0					59	21	4	0	0	0	0.41408	1	9672	9672		66.429	11.653	1	10462000	+		6997	22453	5619	5628	8148	8148					-0.058160281787195345
EGPTSRKLT	9	Unmodified	_EGPTSRKLT_					0	0	0			REV__ENST00000593393.1_1_19:58918335-58918641:-|nuORF	REV__ENST00000593393.1_1_19:58918335-58918641:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	494.77960205078125	2	494.774731	987.534909	-1.6043	-0.00079376	0.8633	0.00042714	-0.74099	-0.00036662	494.77511638470475	34.991	0.4935	32.281	32.109	32.602	-2.7097					25	9	4	0	0	0	0.027462	1	1362	1362		26.693	0	1	92760	+		6998	27963	5620	5629	8149	8149					0.04064268437844021
EGPVKKPK	8	Unmodified	_EGPVKKPK_					0	0	0			REV__CACNA1D-DNAH1|1|fusion;REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__CACNA1D-DNAH1|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	441.247314453125	2	441.774003	881.533452	1.0592	0.00046792	1.4602	0.00064508	2.5194	0.001113	441.7744655331316	62.127	0.3409	62.127	61.912	62.253	0					9	7	2	0	0	0	0.028476	1	5498	5498		7.6903	0	1	63676	+		6999	15726;18203	5621	5630	8150	8150					0.08794679139759864
EGPYIILHQ	9	Unmodified	_EGPYIILHQ_					0	0	0			REV__ENST00000539921.5_1_11:62622368-62622703:-|nuORF	REV__ENST00000539921.5_1_11:62622368-62622703:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.8151245117188	2	535.287474	1068.5604	-1.4557	-0.00077919	1.3991	0.00074893	-0.056529	-3.0259E-05	535.2875989396276	117.54	0.62685	116.19	115.74	116.37	-1.3444					14	11	2	0	0	0	0.027462	1	10968	10968		21.96	0	1	9065.5	+		7000	27318	5622	5631	8151	8151					0.028857429603021956
EGQARKWR	8	Unmodified	_EGQARKWR_					0	0	0			REV__ENST00000520874.1_1_8:108995475-108995910:+|nuORF	REV__ENST00000520874.1_1_8:108995475-108995910:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2406616210938	2	515.780682	1029.54681	-1.0537	-0.00054345	-2.5388	-0.0013095	-3.5925	-0.0018529	515.7800750485543	36.431	0.90392	36.431	36.119	37.023	0					32	19	3	0	0	0	0.028476	1	1943	1943		42.474	1.9018	1	188550	+		7001	27064	5623	5632	8152	8152					0.03321929971684767
EGQDKVKAE	9	Unmodified	_EGQDKVKAE_					0	0	0			REV__MYO18A|p.E1555G|1|0.1|ENSG00000196535|chr17:29094696-29094696|T/C|missense_variant	REV__MYO18A|p.E1555G|1|0.1|ENSG00000196535|chr17:29094696-29094696|T/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.2784118652344	2	502.256371	1002.49819	-0.15984	-8.028E-05	0.64099	0.00032194	0.48115	0.00024166	502.25668808891123	70.556	0.39127	70.556	70.408	70.8	0					14	9	2	0	0	0	0.027255	1	6793	6793		82.75	0	1	199980	+		7002	28690	5624	5633	8153	8153					-0.0029602817870681974
EGQELKFIV	9	Unmodified	_EGQELKFIV_					0	0	0			REV__ENSG00000081386|ENST00000223428|ZNF510;REV__ENSG00000198040|ENST00000539354|ZNF84;REV__ENSG00000184939|ENST00000563169|ZFP90;REV__ENSG00000198185|ENST00000692313|ZNF334	REV__ENSG00000198185|ENST00000692313|ZNF334	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.79150390625	2	531.795132	1061.57571	-1.133	-0.0006025	-0.32138	-0.00017091	-1.4543	-0.00077341	531.7942588866118	105.76	0.75909	103.74	103.45	104.21	-2.0161					22	14	3	0	0	0	0.027462	1	9663	9663		32.812	0	1	28710	+		7003	17072;22981;22462;22998	5625	5634	8154	8154					0.04738609757464474
EGQHPLSPL	9	Unmodified	_EGQHPLSPL_					0	0	0			REV__ENST00000372850.5_1_9:131151827-131152010:+|nuORF	REV__ENST00000372850.5_1_9:131151827-131152010:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	489.29364013671875	2	489.256174	976.497795	-0.28671	-0.00014027	0.54206	0.00026521	0.25535	0.00012493	489.25623692116005	63.134	1.3512	59.659	58.994	60.345	-3.475					55	27	3	0	0	0	0.027441	1	4396	4396		49.442	0	1	120610	+		7004	25017	5626	5635	8155	8155					0.00860596892096055
EGQLKRLR	8	Unmodified	_EGQLKRLR_					0	0	0			REV__tr|A0A7D6W0W7|A0A7D6W0W7_9CLOTWingedhelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01420PE=4SV=1	REV__tr|A0A7D6W0W7|A0A7D6W0W7_9CLOTWingedhelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01420PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	500.30645751953125	2	500.306532	998.598512	0.39617	0.00019821	-0.80851	-0.0004045	-0.41234	-0.0002063	500.3060378251117	45.763	1.1799	45.763	45.496	46.676	0					47	26	4	0	0	0	0.7043	1	3203	3203		42.474	0.078325	1	3817400	+		7005	31867	5627	5636	8156	8156					0.09915673665614122
EGQRAGVQL	9	Unmodified	_EGQRAGVQL_					0	0	0		ENST00000306888.6_1_4:54364989-54373573:-|nuORF	ENST00000306888.6_1_4:54364989-54373573:-|nuORF	ENST00000306888.6_1_4:54364989-54373573:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	479.25982666015625	2	479.259248	956.503943	0.13163	6.3084E-05	-0.35383	-0.00016958	-0.22221	-0.00010649	479.2589537931221	52.544	0.69543	52.544	52.304	52.999	0					41	15	4	0	0	0	0.22621	1	4120	4120		71.877	8.5712	1	4831200			7006	10248	5628	5637	8157	8157					0.023951151236246915
EGQRKSPL	8	Unmodified	_EGQRKSPL_					0	0	0		nc|ENSG00000163378|Q5NDL2-2|EOGT;nc|ENSG00000163378|Q5NDL2-3|EOGT;ENSG00000163378|ENST00000383701|EOGT	nc|ENSG00000163378|Q5NDL2-2|EOGT	nc|ENSG00000163378|Q5NDL2-2|EOGT	MULTI-MSMS	OvCa99_classI_Rep5	1	458.26226806640625	2	457.756341	913.498129	0.28898	0.00013228	2.9412	0.0013464	3.2302	0.0014786	457.75646808202	67.388	0.93953	67.388	66.977	67.916	0					64	23	4	0	0	0	0.72896	1	6281	6281		37.159	1.9584	1	5450700			7007	6295	5629	5638	8158	8158					0.03792016611953386
EGQVAKQASL	10	Unmodified	_EGQVAKQASL_					0	0	0		ENST00000288078.10_1_16:70508152-70508463:+|nuORF	ENST00000288078.10_1_16:70508152-70508463:+|nuORF	ENST00000288078.10_1_16:70508152-70508463:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	514.7984008789062	2	515.780013	1029.54547	0.017052	8.795E-06	4.4633	0.0023021	4.4803	0.0023109	515.7821731451232	117.87	1.4374	116.84	116.19	117.63	-1.0324					61	28	3	0	0	0	0.026802	1	8899	8899		9.1829	0	1	104290			7008	10080	5630	5639	8159	8159					0.03188251092274186
EGREAILPL	9	Unmodified	_EGREAILPL_					0	0	0		chr17:75833045-75833193|363|15.26|0.59|4.7|-|0|UNC13D,UNC13D|1	chr17:75833045-75833193|363|15.26|0.59|4.7|-|0|UNC13D,UNC13D|1	chr17:75833045-75833193|363|15.26|0.59|4.7|-|0|UNC13D,UNC13D|1	MULTI-MSMS	OvCa99_classI_Rep5	1	499.2872619628906	2	499.287474	996.560395	-0.53285	-0.00026605	-0.022427	-1.1197E-05	-0.55528	-0.00027724	499.2870566315566	41.393	1.1002	41.393	40.881	41.982	0					54	24	5	0	0	0	0.19758	1	2586	2586		76.774	2.5191	1	747550			7009	394	5631	5640	8160	8160					0.06197742960296182
EGRKILTPII	10	Unmodified	_EGRKILTPII_					0	0	0		ENSG00000175110|ENST00000680020|MRPS22;ENST00000498505.5_1_3:139068252-139075853:+|nuORF;ENST00000483545.1_1_3:139065838-139069914:+|nuORF	ENSG00000175110|ENST00000680020|MRPS22	ENSG00000175110|ENST00000680020|MRPS22	MULTI-MSMS	OvCa9_classI_Rep2	2	570.3583984375	2	570.360973	1138.70739	-4.2157	-0.0024045	0.51987	0.00029652	-3.6958	-0.002108	570.3611382746453	152.47	1.2391	152.25	151.83	153.07	-0.22697					66	25	4	0	0	0	0.75313	1	15513	15513		24.519	8.8774	1	86072			7010	7517	5632	5641	8161	8161					0.14358839845226612
EGRLFLAGR	9	Unmodified	_EGRLFLAGR_					0	0	0			REV__ENST00000580114.5_3_16:67197575-67198388:+|nuORF	REV__ENST00000580114.5_3_16:67197575-67198388:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.75	2	509.793258	1017.57196	-0.13776	-7.023E-05	-0.19644	-0.00010014	-0.3342	-0.00017037	509.79361666622094	42.982	0.76901	42.982	42.624	43.393	0					30	17	3	0	0	0	0.027448	1	2854	2854		44.117	0	1	138570	+		7011	27819	5633	5642	8162	8162					0.06387984774278266
EGRLVNNQTGS	11	Unmodified	_EGRLVNNQTGS_					0	0	0			REV__ENSG00000112936|ENST00000313164|C7	REV__ENSG00000112936|ENST00000313164|C7	MULTI-MSMS	OvCa99_classI_Rep5	1	587.7963256835938	2	587.794183	1173.57381	2.3265	0.0013675	-0.23403	-0.00013756	2.0925	0.00123	587.7940327813749	100.59	2.6533	100.59	100.28	102.93	0					122	62	2	0	0	0	0.52842	1	11287	11287		51.193	0	1	30143000	+		7012	18126	5634	5643	8163	8163					-0.00603050998438448
EGRMTSKIN	9	Unmodified	_EGRMTSKIN_					0	0	0		ENST00000523834.1_1_8:38645888-38646230:+|nuORF	ENST00000523834.1_1_8:38645888-38646230:+|nuORF	ENST00000523834.1_1_8:38645888-38646230:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.3259887695312	2	518.266216	1034.51788	-0.8708	-0.00045131	-0.33365	-0.00017292	-1.2045	-0.00062423	518.2658795090084	106.15	1.3413	104.14	103.74	105.09	-2.0161					47	25	3	0	0	0	0.02744	1	9648	9648		36.447	7.2972	1	58201			7013	13156	5635	5644	8164	8164					0.002000245603994699
EGRQDKPM	8	Unmodified	_EGRQDKPM_					0	0	0		ENST00000572085.5_1_15:43707600-43785241:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1	ENST00000572085.5_1_15:43707600-43785241:-|nuORF	ENST00000572085.5_1_15:43707600-43785241:-|nuORF	MSMS	OvCa9_classI_Rep3	3	480.73199462890625	2	480.732009	959.449465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.907	1	50.709	50.209	51.209	-3.1978								0	0	0	0.30129	1	1339	1339		17.365	0.89182	1				7014	1375	5636	5645	8165	8165					-0.03188220019455912
EGRRALVEA	9	Unmodified	_EGRRALVEA_					0	0	0			REV__ENSG00000181396|ENST00000313056|OGFOD3	REV__ENSG00000181396|ENST00000313056|OGFOD3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.3042297363281	2	500.780348	999.546142	-1.5518	-0.00077712	-3.7318	-0.0018688	-5.2836	-0.0026459	500.7771891045005	100.39	0.82635	98.128	97.775	98.602	-2.2665					39	15	4	0	0	0	0.027462	1	9024	9024		35.618	0	1	58577	+		7015	22232	5637	5646	8166	8166					0.04635090531974129
EGRRKVDGKLL	11	Unmodified	_EGRRKVDGKLL_					0	0	0		nc|ENSG00000077458|Q5HYJ3-3|FAM76B;nc|ENSG00000077458|Q5HYJ3-2|FAM76B;ENSG00000077458|ENST00000358780|FAM76B	nc|ENSG00000077458|Q5HYJ3-3|FAM76B	nc|ENSG00000077458|Q5HYJ3-3|FAM76B	MULTI-MSMS	OvCa9_classI_Rep2	2	424.2576904296875	3	424.257849	1269.75172	-1.0833	-0.0004596	1.0427	0.00044237	-0.040602	-1.7226E-05	424.2582278417872	54.36	1.6434	51.546	51.275	52.918	-2.8139					88	32	4	0	0	0	0.69099	2	3756	3737;3756		32.751	1.6702	1	452900			7016	1574	5638	5647	8167;8168	8168					0.12763243991435047
EGRVCRRA	8	Unmodified	_EGRVCRRA_					0	0	0		ENST00000461818.5_1_3:142583306-142607807:-|nuORF;ENST00000495732.5_1_3:142565552-142607807:-|nuORF	ENST00000461818.5_1_3:142583306-142607807:-|nuORF	ENST00000461818.5_1_3:142583306-142607807:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.750244140625	2	473.75361	945.492667	-0.080789	-3.8274E-05	2.4333	0.0011528	2.3525	0.0011145	473.75480022396806	53.02	1.3813	53.02	52.434	53.815	0					39	31	2	0	0	0	0.028476	1	4240	4240		38.806	9.6566	1	1487000			7017	12189	5639	5648	8169	8169					0.01774014548482228
EGRVRWRTEIR	11	Unmodified	_EGRVRWRTEIR_					0	0	0			REV__ENST00000549982.5_1_12:93861271-93862986:+|nuORF	REV__ENST00000549982.5_1_12:93861271-93862986:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.28204345703125	3	486.607652	1456.80113	0.70096	0.00034109	0.52876	0.0002573	1.2297	0.00059839	486.6080365582307	97.67	0.8089	95.292	95.013	95.822	-2.3786					26	15	2	0	0	0	0.026364	1	8720	8720		9.2118	0.41249	1	33792	+		7018	27461	5640	5649	8170	8170					0.09099952000201483
EGSSEWPS	8	Unmodified	_EGSSEWPS_					0	0	0			REV__nc|ENSG00000008323|Q3KR16-3|PLEKHG6	REV__nc|ENSG00000008323|Q3KR16-3|PLEKHG6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	440.6741943359375	2	439.679965	877.345377	0.64507	0.00028362	-0.37275	-0.00016389	0.27231	0.00011973	439.6797095173057	109.93	0.68501	108.32	108.07	108.75	-1.6011					18	12	2	0	0	0	0.028476	1	10103	10103		50.025	29.543	1	20376	+		7019	16453	5641	5650	8171	8171					-0.09820223575331966
EGSSEWPS	8	Unmodified	_EGSSEWPS_					0	0	0			REV__nc|ENSG00000008323|Q3KR16-3|PLEKHG6	REV__nc|ENSG00000008323|Q3KR16-3|PLEKHG6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	439.679965	877.345377	0.17878	7.8608E-05	0.32836	0.00014437	0.50715	0.00022298	439.68006296267714	109.26	0.73652	108.11	107.93	108.66	-1.1444	-0.10576	0.00015969	NaN	50.025	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18183	+		7020	16453	5641	5650							-0.09820223575331966
EGSVFHIQA	9	Unmodified	_EGSVFHIQA_					0	0	0			REV__ENSG00000122254|ENST00000261374|HS3ST2	REV__ENSG00000122254|ENST00000261374|HS3ST2	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.2491455078125	2	494.248349	986.482145	1.2733	0.00062932	-1.3485	-0.0006665	-0.075241	-3.7188E-05	494.24752708817437	96.962	1.4081	94.536	94.22	95.628	-2.4256					74	27	4	0	0	0	0.55011	1	8603	8603		37.812	0.65241	1	607260	+		7021	18584	5642	5651	8172	8172					-0.011636896249569872
EGTELKLNP	9	Unmodified	_EGTELKLNP_					0	0	0		ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.3042297363281	2	500.769114	999.523675	-1.2963	-0.00064914	2.1173	0.0010603	0.82097	0.00041112	500.76919218288936	100.94	0.20197	98.676	98.498	98.7	-2.2665					5	3	2	0	0	0	0.027453	1	9024	9024		64.207	12.872	1	22097			7022	7498	5643	5652	8173	8173					0.023894463437045488
EGTGEKNLLL	10	Unmodified	_EGTGEKNLLL_					0	0	0		tr|A0A7D6ZX94|A0A7D6ZX94_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12455PE=4SV=1	tr|A0A7D6ZX94|A0A7D6ZX94_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12455PE=4SV=1	tr|A0A7D6ZX94|A0A7D6ZX94_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12455PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.2521362304688	2	537.295496	1072.57644	1.7856	0.00095942	-1.8172	-0.00097635	-0.03151	-1.693E-05	537.2948553435657	74.763	0.61107	74.763	74.517	75.128	0					20	14	2	0	0	0	0.026752	1	7408	7408		27.882	0	1	326890			7023	35868	5644	5653	8174	8174					0.04305404406522939
EGTGGRTLLV	10	Unmodified	_EGTGGRTLLV_					0	0	0		nc|ENSG00000185973|Q9NVH6-4|TMLHE;nc|ENSG00000185973|Q9NVH6-7|TMLHE;nc|ENSG00000185973|Q9NVH6-6|TMLHE;nc|ENSG00000185973|Q9NVH6-2|TMLHE;nc|ENSG00000185973|Q9NVH6-5|TMLHE;nc|ENSG00000185973|Q9NVH6-3|TMLHE;ENSG00000185973|ENST00000334398|TMLHE;nc|ENSG00000185973|Q9NVH6-8|TMLHE	nc|ENSG00000185973|Q9NVH6-4|TMLHE	nc|ENSG00000185973|Q9NVH6-4|TMLHE	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.7835388183594	2	501.782556	1001.55056	-1.4403	-0.00072271	0.4428	0.00022219	-0.99749	-0.00050052	501.7826273306775	42.051	1.2362	39.071	38.906	40.142	-2.9804					61	23	3	0	0	0	0.45822	1	1937	1937		60.118	0	1	354840			7024	8306	5645	5654	8175	8175					0.04984554954921805
EGTGGRTLLV	10	Unmodified	_EGTGGRTLLV_					0	0	0		nc|ENSG00000185973|Q9NVH6-4|TMLHE;nc|ENSG00000185973|Q9NVH6-7|TMLHE;nc|ENSG00000185973|Q9NVH6-6|TMLHE;nc|ENSG00000185973|Q9NVH6-2|TMLHE;nc|ENSG00000185973|Q9NVH6-5|TMLHE;nc|ENSG00000185973|Q9NVH6-3|TMLHE;ENSG00000185973|ENST00000334398|TMLHE;nc|ENSG00000185973|Q9NVH6-8|TMLHE	nc|ENSG00000185973|Q9NVH6-4|TMLHE	nc|ENSG00000185973|Q9NVH6-4|TMLHE	MULTI-MATCH	OvCa9_classI_Rep2	2		2	501.782556	1001.55056	0.4253	0.00021341	-1.0374	-0.00052054	-0.61208	-0.00030713	501.7818601534395	41.808	0.93711	39.099	38.931	39.868	-2.7097	0.014107	-0.00077414	NaN	60.118	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102030			7025	8306	5645	5654							0.04984554954921805
EGTHIRWHEIL	11	Unmodified	_EGTHIRWHEIL_					0	0	0			REV__ENST00000467807.5_1_19:56888615-56889338:+|nuORF	REV__ENST00000467807.5_1_19:56888615-56889338:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.28521728515625	3	464.245721	1389.71533	-0.34571	-0.00016049	-3.5052	-0.0016273	-3.8509	-0.0017878	464.2440729607361	74.969	0.48048	71.738	71.532	72.012	-3.2308					15	9	2	0	0	0	0.026221	1	5871	5871		14.086	0	1	28219	+		7026	26211	5646	5655	8176	8176					0.03606367094721463
EGTKGNKLPL	10	Unmodified	_EGTKGNKLPL_					0	0	0			REV__nc|ENSG00000163357|Q5T197-2|DCST1	REV__nc|ENSG00000163357|Q5T197-2|DCST1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7905883789062	2	528.806031	1055.59751	1.2244	0.00064748	-0.7335	-0.00038788	0.49092	0.0002596	528.8061384232723	79.089	0.93665	79.089	78.374	79.311	0					42	22	3	0	0	0	0.026826	1	8010	8010		16.717	0	1	1436400	+		7027	28966	5647	5656	8177	8177					0.07193414506036788
EGTKKPPLI	9	Unmodified	_EGTKKPPLI_					0	0	0			REV__ENST00000539068.5_1_6:35610498-35610594:-|nuORF	REV__ENST00000539068.5_1_6:35610498-35610594:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	491.7995300292969	2	491.800217	981.585882	0.45767	0.00022508	-0.86132	-0.0004236	-0.40365	-0.00019852	491.7997614216502	106.26	3.1068	105.82	105.5	108.61	-0.43642					130	62	3	0	0	0	0.42676	1	9880	9880		49.442	3.4693	1	1827600	+		7028	27332	5648	5657	8178	8178					0.09435217482700864
EGTLAQAVKK	10	Unmodified	_EGTLAQAVKK_					0	0	0		MDN1|p.E3571Vfs*18|1|0.11|ENSG00000112159|chr6:89690710-89690711|-/AGGGAAGGAGAGTCACTTA|frameshift_variant;MDN1|p.N5282Ifs*9|1|0.04|ENSG00000112159|chr6:89652262-89652263|-/GATTTTTCTGCCAACTA|frameshift_variant;MDN1|p.I5359Kfs*8|1|0.1|ENSG00000112159|chr6:89650154-89650155|-/CATAGCT|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1	MDN1|p.E3571Vfs*18|1|0.11|ENSG00000112159|chr6:89690710-89690711|-/AGGGAAGGAGAGTCACTTA|frameshift_variant	MDN1|p.E3571Vfs*18|1|0.11|ENSG00000112159|chr6:89690710-89690711|-/AGGGAAGGAGAGTCACTTA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	522.2958984375	2	522.806031	1043.59751	-6.4817	-0.0033887	-1.2377	-0.00064709	-7.7194	-0.0040357	522.8054251194676	157.88	0.56296	156.71	156.54	157.1	-1.1707					20	18	2	0	0	0	0.027284	1	13620	13620		14.865	0	1	9914.5			7029	2882	5649	5658	8179	8179					0.07745414506052839
EGVDGEDTGL	10	Unmodified	_EGVDGEDTGL_					0	0	0		ENSG00000076864|ENST00000374765|RAP1GAP;nc|ENSG00000076864|P47736-2|RAP1GAP;nc|ENSG00000076864|P47736-3|RAP1GAP;nc|ENSG00000076864|P47736-4|RAP1GAP	ENSG00000076864|ENST00000374765|RAP1GAP	ENSG00000076864|ENST00000374765|RAP1GAP	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.2479553222656	2	496.214369	990.414184	-0.30116	-0.00014944	1.951	0.00096811	1.6498	0.00081867	496.21591320703305	69.368	0.24541	69.368	69.268	69.513	0					7	5	2	0	0	0	0.027422	1	6586	6586		104.75	38.317	1	201300			7030	1558	5650	5659	8180	8180					-0.08140604066272772
EGVGSVGPEP	10	Unmodified	_EGVGSVGPEP_					0	0	0			REV__ENSG00000240857|ENST00000381249|RDH14	REV__ENSG00000240857|ENST00000381249|RDH14	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.7046203613281	2	464.224539	926.434526	-0.21926	-0.00010178	4.2235	0.0019606	4.0042	0.0018589	464.2269781745926	41.151	0.44748	41.151	40.838	41.285	0					15	9	3	0	0	0	0.026891	1	2563	2563		39.253	10.999	1	60832	+		7031	23443	5651	5660	8181	8181					-0.03163388615791973
EGVLRNRKS	9	Unmodified	_EGVLRNRKS_					0	0	0		nc|ENSG00000006576|Q8N3S3-7|PHTF2;nc|ENSG00000006576|Q8N3S3-4|PHTF2;nc|ENSG00000006576|Q8N3S3-3|PHTF2;nc|ENSG00000006576|Q8N3S3-2|PHTF2;ENSG00000006576|ENST00000416283|PHTF2;ENST00000454592.5_1_7:77538159-77567164:+|nuORF;nc|ENSG00000006576|Q8N3S3-6|PHTF2;nc|ENSG00000006576|Q8N3S3-5|PHTF2	nc|ENSG00000006576|Q8N3S3-7|PHTF2	nc|ENSG00000006576|Q8N3S3-7|PHTF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.7578735351562	2	529.806897	1057.59924	-0.0048364	-2.5624E-06	2.2228	0.0011776	2.2179	0.0011751	529.8078731364446	58.38	0.66482	58.38	58.069	58.734	0					31	15	3	0	0	0	0.027462	1	4936	4936		35.618	1.4457	1	2606700			7032	881	5652	5661	8182	8182					0.07274468314653859
EGVQVKRVLE	10	Unmodified	_EGVQVKRVLE_					0	0	0		MECP2|p.D407Afs*2|1|0.1|ENSG00000169057|chrX:154030608-154030608|T/-|frameshift_variant;nc|ENSG00000169057|P51608|MECP2;ENSG00000169057|ENST00000453960|MECP2	MECP2|p.D407Afs*2|1|0.1|ENSG00000169057|chrX:154030608-154030608|T/-|frameshift_variant	MECP2|p.D407Afs*2|1|0.1|ENSG00000169057|chrX:154030608-154030608|T/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.7899169921875	2	578.837862	1155.66117	1.8612	0.0010774	-1.4448	-0.00083632	0.41641	0.00024103	578.836273658772	115.47	0.6999	115.47	115.16	115.86	0					24	14	2	0	0	0	0.026994	1	13185	13185		25.574	3.6142	1	90553			7033	6972	5653	5662	8183	8183					0.08956774943135315
EGVRAQDRVLP	11	Unmodified	_EGVRAQDRVLP_					0	0	0			REV__ENST00000450269.5_1_1:45279549-45279714:+|nuORF	REV__ENST00000450269.5_1_1:45279549-45279714:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	620.3450927734375	2	620.343843	1238.67313	-0.19382	-0.00012024	0.59841	0.00037122	0.40459	0.00025098	620.3440905374964	21.453	0.25136	21.453	21.331	21.582	0					18	8	3	0	0	0	0.72466	1	120	120		19.997	0.89325	1	35705	+		7034	25959	5654	5663	8184	8184					0.06334391686323215
EGVSHVIVD	9	Unmodified	_EGVSHVIVD_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.2941589355469	2	477.748182	953.481811	0.24279	0.00011599	-1.2702	-0.00060683	-1.0274	-0.00049084	477.74752526165537	76.08	0.28537	73.141	72.985	73.27	-2.9389					8	5	2	0	0	0	0.027462	1	6025	6025		37.159	0	1	15804			7035	4112	5655	5664	8185	8185					0.0032089065518903226
EGVSTLLLFL	10	Unmodified	_EGVSTLLLFL_					0	0	0		ENST00000399799.2_1_18:18691173-18691332:-|nuORF	ENST00000399799.2_1_18:18691173-18691332:-|nuORF	ENST00000399799.2_1_18:18691173-18691332:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	546.3201904296875	2	546.320983	1090.62741	-2.5941	-0.0014172	2.4768	0.0013531	-0.11727	-6.4066E-05	546.3218690878751	140.9	1.3767	139.86	139.33	140.71	-1.0339					60	27	3	0	0	0	0.59703	1	11649	11649		42.396	5.237	1	135350			7036	11401	5656	5665	8186	8186					0.0857235345135905
EGVVYNGFHTE	11	Unmodified	_EGVVYNGFHTE_					0	0	0			REV__sp|P16729|MCP_HCMVAMajorcapsidproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=MCPPE=1SV=1	REV__sp|P16729|MCP_HCMVAMajorcapsidproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=MCPPE=1SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	417.7177429199219	3	417.859532	1250.55677	-0.17159	-7.1702E-05	3.5271	0.0014738	3.3555	0.0014021	418.1954368105744	68.21	0.48524	68.21	67.996	68.481	0					17	11	2	0	0	0	0.02523	1	6427	6427		60.167	21.453	1	211160	+		7037	29414	5657	5666	8187	8187					-0.058489716042458895
EGWEARAACHA	11	Unmodified	_EGWEARAACHA_					0	0	0		chr11:75401705-75404812|121|195.88|0.06|11.63|+|2|RPS3,None|3;chr11:75404207-75404812|387|105.78|0.25|8.71|+|2|RPS3,None|1	chr11:75401705-75404812|121|195.88|0.06|11.63|+|2|RPS3,None|3	chr11:75401705-75404812|121|195.88|0.06|11.63|+|2|RPS3,None|3	MULTI-MSMS	OvCa99_classI_Rep5	1	600.7647705078125	2	600.764372	1199.51419	1.5845	0.00095193	-1.1699	-0.00070283	0.41464	0.0002491	600.7630289667253	123.26	1.2055	123.26	122.4	123.61	0					43	25	4	0	0	0	0.56722	1	14204	14204		47.657	0	1	355310			7038	305	5658	5667	8188	8188					-0.0775864521344829
EGWGLFAGR	9	Unmodified	_EGWGLFAGR_					0	0	0			REV__ENST00000541426.1_1_12:11802972-11803032:+|nuORF	REV__ENST00000541426.1_1_12:11802972-11803032:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.77679443359375	2	496.751059	991.487565	-1.3215	-0.00065648	-3.3503	-0.0016643	-4.6718	-0.0023207	496.74930894914576	50.633	0.46471	47.46	47.256	47.721	-3.1734					12	8	2	0	0	0	0.027462	1	2950	2950		23.042	15.849	1	30297	+		7039	27372	5659	5668	8189	8189					-0.00851966042478125
EHAELYARI	9	Unmodified	_EHAELYARI_					0	0	0			REV__nc|ENSG00000111581|P57740-3|NUP107	REV__nc|ENSG00000111581|P57740-3|NUP107	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.290283203125	2	551.288005	1100.56146	-0.82905	-0.00045704	3.4289	0.0018903	2.5999	0.0014333	551.2898143006373	65.737	1.5576	62.252	61.791	63.349	-3.4854					83	31	4	0	0	0	0.59983	1	4735	4735		31.955	2.8053	1	791400	+		7040	18039	5660	5669	8190	8190					0.015199573291738488
EHAFTRIM	8	Unmodified	_EHAFTRIM_					0	0	0			REV__tr|A0A553SFM9|A0A553SFM9_NIACIOrnithinecarbamoyltransferaseOS=NialliacirculansOX=1397GN=argFPE=3SV=1	REV__tr|A0A553SFM9|A0A553SFM9_NIACIOrnithinecarbamoyltransferaseOS=NialliacirculansOX=1397GN=argFPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.7921447753906	2	502.752744	1003.49094	-1.2345	-0.00062064	2.8528	0.0014342	1.6183	0.0008136	502.75420227491554	47.966	0.79502	45.256	44.984	45.779	-2.7097					20	15	2	0	0	0	0.028476	1	2989	2989		38.806	13.356	1	23785	+		7041	29594	5661	5670	8191	8191					-0.010670392601355161
EHALFDFLF	9	Unmodified	_EHALFDFLF_					0	0	0		L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|250|2|anti-sense	L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|250|2|anti-sense	L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|250|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.3330078125	2	569.782025	1137.5495	0.29368	0.00016733	-0.49292	-0.00028086	-0.19924	-0.00011352	570.2840738533912	72.77	0.19398	72.77	72.61	72.804	0					6	4	2	0	0	0	0.027462	1	7084	7084		33.516	1.5607	1	373310			7042	14745	5662	5671	8192	8192					-0.013776594140153975
EHALLIMRQL	10	Oxidation (M)	_EHALLIM(Oxidation (M))RQL_		EHALLIM(1)RQL		EHALLIM(46)RQL	0	0	1			REV__ENST00000578264.1_1_17:80019305-80022125:-|nuORF	REV__ENST00000578264.1_1_17:80019305-80022125:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	620.347900390625	2	620.34754	1238.68053	-0.76786	-0.00047634	-1.8312	-0.001136	-2.599	-0.0016123	620.345998590274	68.369	0.58165	68.369	68.152	68.733	0					39	13	4	0	0	0	0.5675	1	6452	6452		45.972	7.2186	1	2291900	+		7043	21478	5663	5672	8193	8193		501			0.07073407962388956
EHASDLRVEVQ	11	Unmodified	_EHASDLRVEVQ_					0	0	0		ENSG00000131381|ENST00000253699|RBSN	ENSG00000131381|ENST00000253699|RBSN	ENSG00000131381|ENST00000253699|RBSN	MULTI-MSMS	OvCa99_classI_Rep5	1	428.2185363769531	3	428.217719	1281.63133	-0.45656	-0.00019551	-2.9581	-0.0012667	-3.4146	-0.0014622	428.21657378136337	42.346	1.5502	42.346	41.55	43.1	0					112	35	5	0	0	0	0.6986	1	2670	2670		30.139	0	1	5010600			7044	4061	5664	5673	8194	8194					0.001777912071247556
EHCVDTREL	9	Unmodified	_EHCVDTREL_					0	0	0			REV__ENSG00000177311|ENST00000321464|ZBTB38	REV__ENSG00000177311|ENST00000321464|ZBTB38	MULTI-SECPEP	OvCa9_classI_Rep2	2	550.8289184570312	2	551.253305	1100.49206	-1.1482	-0.00063294	0.6155	0.0003393	-0.53269	-0.00029365	551.25345745052	34.744	0.54522	32.034	31.761	32.306	-2.7097					17	10	2	0	0	0	0.027462	1	1321	1321		20.947	0	1	25028	+		7045	21998	5665	5674	8195	8195					-0.054168696818805984
EHDLLKPHL	9	Unmodified	_EHDLLKPHL_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1;nc|ENSG00000095564|O14981-2|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.7921142578125	2	551.306198	1100.59784	-0.85148	-0.00046943	0.86538	0.00047709	0.013904	7.6651E-06	551.3067115103029	51.975	0.68201	51.975	51.708	52.39	0					32	15	3	0	0	0	0.027462	1	4080	4080		19.36	9.0947	1	987790			7046	1932	5666	5675	8196	8196					0.051568342258860866
EHFGKDKP	8	Unmodified	_EHFGKDKP_					0	0	0		CON__Q29443;CON__Q0IIK2	CON__Q29443	CON__Q29443	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.3064880371094	2	479.243067	956.47158	0.004903	2.3498E-06	4.0869	0.0019586	4.0918	0.001961	479.2443815711405	40.748	0.59044	38.039	37.749	38.339	-2.7097					15	11	3	0	0	0	0.028476	1	2074	2074		45.952	40.394	1	13353		+	7047	633	5667	5676	8197	8197					-0.008396722793918343
EHFNYYSLD	9	Unmodified	_EHFNYYSLD_					0	0	0		ENSG00000076864|ENST00000374765|RAP1GAP;nc|ENSG00000076864|P47736-2|RAP1GAP;nc|ENSG00000076864|P47736-3|RAP1GAP;nc|ENSG00000076864|P47736-4|RAP1GAP;RAP1GAP|p.Y317Mfs*52|1|0.25|ENSG00000076864|chr1:21610170-21610171|-/GGCAT|frameshift_variant	ENSG00000076864|ENST00000374765|RAP1GAP	ENSG00000076864|ENST00000374765|RAP1GAP	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.279296875	2	594.253828	1186.4931	0.99736	0.00059268	-2.5173	-0.0014959	-1.52	-0.00090325	594.2521480781023	115	0.65168	115	114.7	115.35	0					30	13	3	0	0	0	0.027462	1	13167	13167		32.812	0	1	534060			7048	1558	5668	5677	8198	8198					-0.09268332041324356
EHFREHLD	8	Unmodified	_EHFREHLD_					0	0	0		CACNA2D3-DAP3|1|fusion;nc|ENSG00000157445|Q8IZS8-3|CACNA2D3;CACNA2D3-TEX264|1|fusion;nc|ENSG00000157445|Q8IZS8-2|CACNA2D3;ENSG00000157445|ENST00000474759|CACNA2D3	CACNA2D3-DAP3|1|fusion	CACNA2D3-DAP3|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.3400268554688	2	541.75433	1081.49411	-0.011447	-6.2014E-06	2.8451	0.0015413	2.8336	0.0015351	541.7557383124529	32.328	2.2527	32.328	31.956	34.209	0					82	45	2	0	0	0	0.028476	1	1576	1576		51.335	8.9393	1	417770			7049	174	5669	5678	8199	8199					-0.04338072881773769
EHHDSYQW	8	Unmodified	_EHHDSYQW_					0	0	0			REV__ENSG00000069956|ENST00000261845|MAPK6	REV__ENSG00000069956|ENST00000261845|MAPK6	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.2731323242188	2	551.222862	1100.43117	-0.48497	-0.00026732	2.9842	0.001645	2.4993	0.0013777	551.7253747239934	50.97	0.17243	50.97	50.863	51.036	0					5	3	2	0	0	0	0.028476	1	3910	3910		28.254	12.612	1	126670	+		7050	16871	5670	5679	8200	8200					-0.11502638669821863
EHHLPPSPLE	10	Unmodified	_EHHLPPSPLE_					0	0	0		ENST00000492220.1_1_1:150381497-150445807:+|nuORF;nc|ENSG00000163125|Q5VT52-2|RPRD2;nc|ENSG00000163125|Q5VT52-3|RPRD2;ENSG00000163125|ENST00000369068|RPRD2	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	ENST00000492220.1_1_1:150381497-150445807:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2891845703125	2	578.293288	1154.57202	-7.6021	-0.0043963	1.2846	0.00074285	-6.3176	-0.0036534	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.72319	1	14197	14197		27.882	3.3631	1	1429200			7051	6269	5671	5680	8201	8201					0.0009193998364480649
EHHWKYFGF	9	Unmodified	_EHHWKYFGF_					0	0	0			REV__ENST00000515528.1_1_5:73981085-73985366:+|nuORF	REV__ENST00000515528.1_1_5:73981085-73985366:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	626.2890625	2	625.790715	1249.56688	1.3174	0.00082444	-3.0444	-0.0019052	-1.727	-0.0010807	625.7886005737114	111.33	0.80843	111.33	111.02	111.83	0					35	17	3	0	0	0	0.38529	1	12649	12649		53.351	2.1588	1	667270	+		7052	16681	5672	5681	8202	8202					-0.04792319088369368
EHIESRTL	8	Unmodified	_EHIESRTL_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;PLIN2|p.Q379Lfs*8|1|0.08|ENSG00000147872|chr9:19116426-19116427|-/TGTTTTCATGGAGA|frameshift_variant	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	OvCa99_classI_Rep5	1	492.75927734375	2	492.759081	983.503609	-0.7351	-0.00036223	0.55317	0.00027258	-0.18193	-8.9648E-05	492.75924816391023	41.572	0.95548	41.572	41.33	42.286	0					40	21	3	0	0	0	0.3457	1	2603	2603		98.629	30.145	1	1856300			7053	5378	5673	5682	8203	8203					0.01119695403770038
EHIHELLGKA	10	Unmodified	_EHIHELLGKA_					0	0	0			REV__tr|A0A553SNR3|A0A553SNR3_NIACIMurR/RpiRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_25050PE=4SV=1	REV__tr|A0A553SNR3|A0A553SNR3_NIACIMurR/RpiRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_25050PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.8132934570312	2	573.81693	1145.61931	-0.56802	-0.00032594	-0.32416	-0.00018601	-0.89218	-0.00051195	573.8170667913666	48.653	2.1296	48.653	47.638	49.768	0					61	48	2	0	0	0	0.026659	1	3566	3566		54.776	6.8607	1	907130	+		7054	30443	5674	5683	8204	8204					0.05232219254617121
EHIHNKID	8	Unmodified	_EHIHNKID_					0	0	0			REV__nc|ENSG00000138380|Q8N187-3|CARF	REV__nc|ENSG00000138380|Q8N187-3|CARF	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.7900085449219	2	503.259248	1004.50394	0.026517	1.3345E-05	2.4205	0.0012181	2.447	0.0012315	503.260445298202	32.906	0.33841	32.906	32.651	32.989	0					9	6	2	0	0	0	0.028476	1	1447	1447		47.916	7.1374	1	45669	+		7055	19534	5675	5684	8205	8205					0.0018711512361733185
EHIIPQGLL	9	Unmodified	_EHIIPQGLL_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MULTI-MSMS	OvCa9_classI_Rep2	2	510.2966613769531	2	510.297842	1018.58113	-1.0099	-0.00051533	0.63011	0.00032155	-0.37974	-0.00019378	510.2975374624307	100.23	1.1904	99.401	99.162	100.35	-0.83051					37	23	3	0	0	0	0.48324	1	9157	9157		44.117	1.6423	1	376860			7056	2511	5676	5685	8206	8206					0.07258333339962064
EHIKIYFE	8	Unmodified	_EHIKIYFE_					0	0	0		tr|A0A553SFN9|A0A553SFN9_NIACIEsteraseOS=NialliacirculansOX=1397GN=CEQ21_09220PE=4SV=1	tr|A0A553SFN9|A0A553SFN9_NIACIEsteraseOS=NialliacirculansOX=1397GN=CEQ21_09220PE=4SV=1	tr|A0A553SFN9|A0A553SFN9_NIACIEsteraseOS=NialliacirculansOX=1397GN=CEQ21_09220PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	539.782958984375	2	539.782025	1077.5495	0.063529	3.4292E-05	0.30032	0.00016211	0.36385	0.0001964	539.7820812319424	37.568	1.2455	34.675	34.192	35.437	-2.8925					51	24	3	0	0	0	0.745	1	1385	1385		29.15	0	1	125570			7057	33057	5677	5686	8207	8207					0.013823405859966442
EHIQHIVI	8	Unmodified	_EHIQHIVI_					0	0	0		nc|ENSG00000154760|Q68D06-2|SLFN13;ENSG00000154760|ENST00000285013|SLFN13;ENSG00000172716|ENST00000685675|SLFN11	nc|ENSG00000154760|Q68D06-2|SLFN13	nc|ENSG00000154760|Q68D06-2|SLFN13	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.7928466796875	2	494.782359	987.550165	1.3584	0.0006721	-0.55426	-0.00027424	0.80412	0.00039786	494.7821658318908	148.99	0.29033	148.99	148.92	149.21	0					9	5	2	0	0	0	0.028476	1	17450	17450		19.36	0	1	22964			7058	5751	5678	5687	8208	8208					0.055891800256858915
EHIVALLKSL	10	Unmodified	_EHIVALLKSL_					0	0	0			REV__ENSG00000197275|ENST00000336148|RAD54B	REV__ENSG00000197275|ENST00000336148|RAD54B	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3474731445312	2	561.847699	1121.68084	-2.5142	-0.0014126	-1.0339	-0.00058092	-3.5482	-0.0019935	561.8469845001015	152.99	1.31	151.56	151.24	152.55	-1.4351					96	32	4	0	0	0	0.75313	1	15212	15212		24.519	3.5723	1	225430	+		7059	22907	5679	5688	8209	8209					0.12487150953870696
EHKIQANN	8	Unmodified	_EHKIQANN_					0	0	0			REV__ENSG00000172361|ENST00000398545|CFAP53	REV__ENSG00000172361|ENST00000398545|CFAP53	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.2640686035156	2	477.243598	952.472643	-0.5496	-0.00026229	-0.0383	-1.8279E-05	-0.5879	-0.00028057	477.24352399802024	65.799	1.117	62.314	61.987	63.104	-3.4854					37	22	2	0	0	0	0.028476	1	4773	4773		17.365	4.4058	1	182350	+		7060	21693	5680	5689	8210	8210					-0.005494579104947661
EHKIRKTGSVK	11	Unmodified	_EHKIRKTGSVK_					0	0	0			REV__ARID5B|p.M861Cfs*21|1|0.05|ENSG00000150347|chr10:62092044-62092044|A/-|frameshift_variant	REV__ARID5B|p.M861Cfs*21|1|0.05|ENSG00000150347|chr10:62092044-62092044|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8819580078125	2	641.883136	1281.75172	-4.6434	-0.0029805	3.7859	0.0024301	-0.85746	-0.00055039	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.72521	1	15740	15740		12.812	1.9462	1	543390	+		7061	15659	5681	5690	8211	8211					0.12211243991373522
EHKLKQAIL	9	Unmodified	_EHKLKQAIL_					0	0	0			REV__ENSG00000230561|ENST00000514853|CCDC192	REV__ENSG00000230561|ENST00000514853|CCDC192	MULTI-MSMS	OvCa9_classI_Rep2	2	540.330078125	2	540.332216	1078.64988	-1.5762	-0.00085169	-2.2598	-0.001221	-3.836	-0.0020727	540.3309156564876	138.68	4.2384	138.45	137.13	141.37	-0.22697					227	86	3	0	0	0	0.67509	1	13920	13920		23.042	0	1	66382	+		7062	23382	5682	5691	8212	8212					0.11369997639667417
EHLIMVWI	8	Unmodified	_EHLIMVWI_					0	0	0		ENSG00000176142|ENST00000319172|TMEM39A;ENST00000468545.1_1_3:119155636-119156697:-|nuORF	ENSG00000176142|ENST00000319172|TMEM39A	ENSG00000176142|ENST00000319172|TMEM39A	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.3114624023438	2	520.783513	1039.55247	1.6449	0.00085662	-2.1066	-0.0010971	-0.46175	-0.00024047	521.2826323432417	82.405	0.51311	82.405	82.181	82.694	0					15	11	2	0	0	0	0.028476	1	8539	8539		37.028	10.232	1	152520			7063	7585	5683	5692	8213	8213					0.03427892439140123
EHLLQGLLPD	10	Unmodified	_EHLLQGLLPD_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-3|SMCHD1;ENST00000584897.5_1_18:2726458-2784452:+|nuORF	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.8104248046875	2	567.811313	1133.60807	0.22441	0.00012742	-0.50774	-0.0002883	-0.28333	-0.00016088	567.8109861589273	113.4	1.1856	113.27	112.82	114.01	-0.12174					56	23	3	0	0	0	0.62299	1	10775	10775		39.253	3.6345	1	241960			7064	2189	5684	5693	8214	8214					0.04661397160475644
EHLLTWTI	8	Unmodified	_EHLLTWTI_					0	0	0			REV__nc|ENSG00000189056|P78509-3|RELN	REV__nc|ENSG00000189056|P78509-3|RELN	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.2327575683594	2	506.776742	1011.53893	-0.57591	-0.00029186	2.5589	0.0012968	1.983	0.0010049	506.7788191875898	61.727	0.32524	61.727	61.501	61.826	0					11	7	2	0	0	0	0.028476	1	5446	5446		33.516	5.6333	1	77351	+		7065	22758	5685	5694	8215	8215					0.03362357931564475
EHLPIRYT	8	Unmodified	_EHLPIRYT_					0	0	0			REV__ENST00000550513.1_1_12:53689756-53691495:+|nuORF	REV__ENST00000550513.1_1_12:53689756-53691495:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	514.779541015625	2	514.779816	1027.54508	0.33502	0.00017246	-0.65043	-0.00033483	-0.31541	-0.00016237	514.779405358466	73.267	2.3697	70.779	70.232	72.602	-2.4873					129	47	3	0	0	0	0.25402	1	3564	3564		115.46	12.686	1	653280	+		7066	27477	5686	5695	8216	8216					0.03240876163090434
EHLSQYLEL	9	Unmodified	_EHLSQYLEL_					0	0	0			REV__tr|A0A7D6ZIZ7|A0A7D6ZIZ7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06320PE=4SV=1	REV__tr|A0A7D6ZIZ7|A0A7D6ZIZ7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06320PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	566.2889404296875	2	566.287671	1130.56079	-1.0179	-0.0005764	0.34399	0.0001948	-0.67386	-0.0003816	566.2877246143615	64.093	0.77695	64.093	63.854	64.631	0					55	18	5	0	0	0	0.14998	1	5804	5804		84.916	2.675	1	2869000	+		7067	32074	5687	5696	8217	8217					0.0007311788947390596
EHLSQYLEL	9	Unmodified	_EHLSQYLEL_					0	0	0			REV__tr|A0A7D6ZIZ7|A0A7D6ZIZ7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06320PE=4SV=1	REV__tr|A0A7D6ZIZ7|A0A7D6ZIZ7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06320PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	566.287671	1130.56079	-1.0179	-0.0005764	0.34399	0.0001948	-0.67386	-0.0003816	566.2877246143615	64.093	0.77695	64.093	63.854	64.631	0	0	0	NaN	84.916	55	18	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2869000	+		7068	32074	5687	5696							0.0007311788947390596
EHLVERKKV	9	Unmodified	_EHLVERKKV_					0	0	0		ENSG00000121621|ENST00000263181|KIF18A	ENSG00000121621|ENST00000263181|KIF18A	ENSG00000121621|ENST00000263181|KIF18A	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.248291015625	2	569.340572	1136.66659	-0.00062639	-3.5663E-07	3.2063	0.0018255	3.2057	0.0018251	569.3423773851152	30.756	0.2484	30.756	30.632	30.881	0					6	4	2	0	0	0	0.027462	1	1196	1196		23.042	2.0956	1	24094			7069	3491	5688	5697	8218	8218					0.10372498525589435
EHMERRRRFEF	11	Unmodified	_EHMERRRRFEF_					0	0	0		nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2;GIGYF2|p.R396Hfs*77|1|0.02|ENSG00000204120|chr2:232791349-232791350|-/CATTC|frameshift_variant	nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.2909545898438	3	531.600281	1591.77901	-0.85316	-0.00045354	1.3454	0.00071523	0.49227	0.00026169	531.6014492533533	69.769	0.53781	69.769	69.552	70.089	0					33	12	4	0	0	0	0.026383	1	6672	6672		8.7993	2.4784	1	1657600			7070	8948	5689	5698	8219	8219					0.00679404260154115
EHMIRSEIL	9	Unmodified	_EHMIRSEIL_					0	0	0		tr|A0A553SFM4|A0A553SFM4_NIACIHydrolaseOS=NialliacirculansOX=1397GN=CEQ21_09150PE=4SV=1	tr|A0A553SFM4|A0A553SFM4_NIACIHydrolaseOS=NialliacirculansOX=1397GN=CEQ21_09150PE=4SV=1	tr|A0A553SFM4|A0A553SFM4_NIACIHydrolaseOS=NialliacirculansOX=1397GN=CEQ21_09150PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.3003540039062	2	564.297516	1126.58048	0.9654	0.00054477	3.1452	0.0017748	4.1106	0.0023196	564.2992513368042	123.58	1.2488	122.21	121.9	123.15	-1.3666					37	22	2	0	0	0	0.33652	1	11696	11696		58.782	2.3482	1	161810			7071	33051	5690	5699	8220	8220					0.02225170628594242
EHNGQEIVQ	9	Unmodified	_EHNGQEIVQ_					0	0	0			REV__tr|A0A553SJD3|A0A553SJD3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16585PE=4SV=1	REV__tr|A0A553SJD3|A0A553SJD3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16585PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2838134765625	2	527.25162	1052.48869	-0.77144	-0.00040674	0.36904	0.00019457	-0.4024	-0.00021217	527.2523787006666	51.85	0.50111	51.85	51.669	52.17	0					14	11	2	0	0	0	0.027462	1	4066	4066		51.335	32.232	1	128170	+		7072	29997	5691	5700	8221	8221					-0.03545796464254636
EHPLKTLIQA	10	Unmodified	_EHPLKTLIQA_					0	0	0			REV__ENST00000488581.5_1_2:172944999-172945131:+|nuORF	REV__ENST00000488581.5_1_2:172944999-172945131:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.8262939453125	2	575.334956	1148.65536	-0.98594	-0.00056725	-0.41025	-0.00023603	-1.3962	-0.00080328	575.3349281350347	44.363	1.0233	44.363	43.909	44.932	0					33	22	3	0	0	0	0.027115	1	3026	3026		37.508	15.822	1	1282500	+		7073	21732	5692	5701	8222	8222					0.0869767643148407
EHQDDFVNQ	9	Unmodified	_EHQDDFVNQ_					0	0	0			REV__tr|A0A7D6ZYG4|A0A7D6ZYG4_9CLOTSelenium-dependentxanthinedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=xdhPE=3SV=1	REV__tr|A0A7D6ZYG4|A0A7D6ZYG4_9CLOTSelenium-dependentxanthinedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=xdhPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	566.2371215820312	2	566.238709	1130.46287	-1.872	-0.00106	-1.0677	-0.00060456	-2.9396	-0.0016645	566.2379478485117	34.794	1.0903	32.084	31.86	32.95	-2.7097					49	21	3	0	0	0	0.60342	1	1360	1360		31.53	4.8369	1	264320	+		7074	32371	5693	5702	8223	8223					-0.09714690706528017
EHQQQKQEVQ	10	Unmodified	_EHQQQKQEVQ_					0	0	0		ENSG00000163207|ENST00000368764|IVL	ENSG00000163207|ENST00000368764|IVL	ENSG00000163207|ENST00000368764|IVL	MULTI-MSMS	OvCa99_classI_Rep5	1	641.3139038085938	2	641.31274	1280.61093	-0.12354	-7.9226E-05	0.0080942	5.1909E-06	-0.11544	-7.4035E-05	641.3125375685067	60.017	0.51231	60.017	59.802	60.314	0					22	12	2	0	0	0	0.61787	1	5216	5216		28.081	0	1	1482800			7075	6277	5694	5703	8224	8224					-0.018153794526597267
EHQSLELALQ	10	Unmodified	_EHQSLELALQ_					0	0	0			REV__nc|ENSG00000140750|Q68EM7-2|ARHGAP17	REV__nc|ENSG00000140750|Q68EM7-2|ARHGAP17	MULTI-SECPEP	OvCa9_classI_Rep4_	4	584.2651977539062	2	584.303852	1166.59315	-0.80868	-0.00047252	-0.79854	-0.00046659	-1.6072	-0.00093911	584.3026706519603	58.21	0.95296	54.865	54.596	55.549	-3.3449					41	18	4	0	0	0	0.027088	1	3875	3875		34.173	17.699	1	122470	+		7076	19699	5695	5704	8225	8225					0.01651905292465017
EHQSLELALQ	10	Unmodified	_EHQSLELALQ_					0	0	0			REV__nc|ENSG00000140750|Q68EM7-2|ARHGAP17	REV__nc|ENSG00000140750|Q68EM7-2|ARHGAP17	MULTI-MATCH	OvCa99_classI_Rep5	1		2	584.303852	1166.59315	-0.72353	-0.00042276	2.0335	0.0011882	1.31	0.00076542	584.304585480414	55.172	0.42343	55.172	54.935	55.358	0	0.20734	0.0020077	NaN	19.997	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214650	+		7077	19699	5695	5704							0.01651905292465017
EHQSLELALQ	10	Unmodified	_EHQSLELALQ_					0	0	0			REV__nc|ENSG00000140750|Q68EM7-2|ARHGAP17	REV__nc|ENSG00000140750|Q68EM7-2|ARHGAP17	MULTI-MATCH	OvCa9_classI_Rep2	2		2	584.303852	1166.59315	-0.75875	-0.00044334	-1.4826	-0.00086631	-2.2414	-0.0013096	584.3036469785118	57.649	1.3991	54.857	54.427	55.826	-2.792	-0.10748	-0.0021013	NaN	19.997	48	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30360	+		7078	19699	5695	5704							0.01651905292465017
EHRKLLRELYP	11	Unmodified	_EHRKLLRELYP_					0	0	0			REV__ENST00000457135.1_1_12:46298152-46298858:+|nuORF	REV__ENST00000457135.1_1_12:46298152-46298858:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	485.27764892578125	3	485.280654	1452.82013	-4.9342	-0.0023945	2.4355	0.0011819	-2.4987	-0.0012126	485.2819571127814	161.62	0.79942	161.39	161.14	161.94	-0.22697					34	15	3	0	0	0	0.72548	1	16470	16470		9.2118	0	1	27115	+		7079	26040	5696	5705	8226	8226					0.11183488571305134
EHRKLLRELYP	11	Unmodified	_EHRKLLRELYP_					0	0	0			REV__ENST00000457135.1_1_12:46298152-46298858:+|nuORF	REV__ENST00000457135.1_1_12:46298152-46298858:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		3	485.280654	1452.82013	-4.9342	-0.0023945	2.4355	0.0011819	-2.4987	-0.0012126	485.2819571127814	161.62	0.79942	161.39	161.14	161.94	-0.22697	0.12827	-0.0014933	NaN	9.2118	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27115	+		7080	26040	5696	5705							0.11183488571305134
EHRKLLRELYP	11	Unmodified	_EHRKLLRELYP_					0	0	0			REV__ENST00000457135.1_1_12:46298152-46298858:+|nuORF	REV__ENST00000457135.1_1_12:46298152-46298858:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		3	485.280654	1452.82013	-7.1924	-0.0034903	6.0969	0.0029587	-1.0955	-0.00053165	485.28386351521783	162.4	0.43161	161.03	160.85	161.28	-1.3692	-0.22758	0.0038371	NaN	9.2118	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16466	+		7081	26040	5696	5705							0.11183488571305134
EHRKLLRELYP	11	Unmodified	_EHRKLLRELYP_					0	0	0			REV__ENST00000457135.1_1_12:46298152-46298858:+|nuORF	REV__ENST00000457135.1_1_12:46298152-46298858:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	485.280654	1452.82013	-6.4732	-0.0031413	4.6754	0.0022689	-1.7979	-0.00087246	485.2831269589886	162.99	0.79515	161.36	161.08	161.87	-1.6336	0.099313	0.0017677	NaN	9.2118	40	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31258	+		7082	26040	5696	5705							0.11183488571305134
EHRNSFIIF	9	Unmodified	_EHRNSFIIF_					0	0	0			REV__LRP1|p.P1269S|1|0.09|ENSG00000123384|chr12:57175920-57175920|C/T|missense_variant	REV__LRP1|p.P1269S|1|0.09|ENSG00000123384|chr12:57175920-57175920|C/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	581.8053588867188	2	581.803823	1161.59309	2.2806	0.0013269	1.4024	0.00081593	3.6831	0.0021428	581.8045855158231	94.23	0.42624	94.23	93.964	94.39	0					22	9	3	0	0	0	0.51865	1	10255	10255		40.778	0	1	974880	+		7083	18637	5697	5706	8227	8227					0.01875950083126554
EHRVKALKI	9	Unmodified	_EHRVKALKI_					0	0	0		tr|A0A7D6VTP9|A0A7D6VTP9_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_03465PE=4SV=1	tr|A0A7D6VTP9|A0A7D6VTP9_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_03465PE=4SV=1	tr|A0A7D6VTP9|A0A7D6VTP9_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_03465PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.3209838867188	2	547.345658	1092.67676	-0.62127	-0.00034005	-1.7905	-0.00098004	-2.4118	-0.0013201	547.3443749294695	33.673	0.24319	33.673	33.533	33.776	0					6	4	2	0	0	0	0.027462	1	1566	1566		24.203	13.937	1	18788			7084	35132	5698	5707	8228	8228					0.13413106250845885
EHSLLRLLI	9	Unmodified	_EHSLLRLLI_					0	0	0		ENST00000400762.7_1_4:1198785-1202445:-|nuORF	ENST00000400762.7_1_4:1198785-1202445:-|nuORF	ENST00000400762.7_1_4:1198785-1202445:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	547.74609375	2	547.340041	1092.66553	-0.052113	-2.8524E-05	-1.0318	-0.00056474	-1.0839	-0.00059327	547.3398111093062	106.16	0.36474	104.82	104.72	105.08	-1.3482					10	6	2	0	0	0	0.027447	1	7488	7488		47.657	17.154	1	12477			7085	11412	5699	5708	8229	8229					0.12290284156711095
EHTEKLRIK	9	Unmodified	_EHTEKLRIK_					0	0	0			REV__ENSG00000170396|ENST00000302277|ZNF804A	REV__ENSG00000170396|ENST00000302277|ZNF804A	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.7950439453125	2	577.33803	1152.66151	-0.35423	-0.00020451	3.4396	0.0019858	3.0854	0.0017813	577.3398704069831	51.307	0.42404	51.307	51.12	51.544	0					21	9	3	0	0	0	0.027462	1	3941	3941		51.335	22.165	1	315660	+		7086	21537	5700	5709	8230	8230					0.09128194662980604
EHTSILVKD	9	Unmodified	_EHTSILVKD_					0	0	0		nc|ENSG00000134571|Q14896-2|MYBPC3;ENSG00000134571|ENST00000545968|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.3123168945312	2	521.282389	1040.55022	1.9738	0.0010289	-0.48953	-0.00025518	1.4843	0.00077373	521.282527442077	80.561	0.17151	80.561	80.443	80.615	0					5	3	2	0	0	0	0.027462	1	8260	8260		38.806	0	1	78932			7087	4309	5701	5710	8231	8231					0.031571352350511006
EHVKLILPHQ	10	Unmodified	_EHVKLILPHQ_					0	0	0			REV__nc|ENSG00000060749|Q2KHR3|QSER1	REV__nc|ENSG00000060749|Q2KHR3|QSER1	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.5511169433594	3	405.239907	1212.69789	0.85659	0.00034712	-4.0024	-0.0016219	-3.1459	-0.0012748	405.23826060664953	39.219	0.40261	39.219	39.017	39.42	0					11	8	2	0	0	0	0.026906	1	2269	2269		27.047	2.8155	1	58294	+		7088	16742	5702	5711	8232	8232					0.10005071559726275
EHYLVTLL	8	Unmodified	_EHYLVTLL_					0	0	0			REV__ENSG00000061794|ENST00000081029|MRPS35	REV__ENSG00000061794|ENST00000081029|MRPS35	MULTI-SECPEP	OvCa9_classI_Rep3	3	494.2919616699219	2	494.279118	986.543683	0.19767	9.7702E-05	-2.9629	-0.0014645	-2.7653	-0.0013668	494.2768117589013	106.93	1.4072	105.66	105.27	106.68	-1.267					39	27	2	0	0	0	0.028476	1	7562	7562		50.025	5.4935	1	70979	+		7089	16746	5703	5712	8233	8233					0.049872420743326984
EIAAKHKGLL	10	Unmodified	_EIAAKHKGLL_					0	0	0			REV__ENSG00000140463|ENST00000268057|BBS4	REV__ENSG00000140463|ENST00000268057|BBS4	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3309326171875	2	540.332216	1078.64988	1.5669	0.00084664	-1.9135	-0.0010339	-0.34663	-0.0001873	540.3309351980477	111.02	0.75117	109.92	109.6	110.35	-1.1038					42	14	4	0	0	0	0.6349	1	8048	8048		37.812	2.6595	1	259370	+		7090	19676	5704	5713	8234	8234					0.11369997639667417
EIAAKLNI	8	Unmodified	_EIAAKLNI_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-2|BLTP1;ENST00000470182.1_1_4:123167396-123168562:+|nuORF	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.75830078125	2	436.26601	870.517468	-0.38034	-0.00016593	-0.53884	-0.00023508	-0.91918	-0.000401	436.2657704090269	81.993	1.0153	79.31	79.061	80.076	-2.6829					33	20	3	0	0	0	0.028476	1	6801	6801		65.803	28.644	1	183720			7091	4713	5705	5714	8235	8235					0.07702972902836791
EIAAKLNI	8	Unmodified	_EIAAKLNI_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-2|BLTP1;ENST00000470182.1_1_4:123167396-123168562:+|nuORF	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	436.26601	870.517468	0.87552	0.00038196	-0.88487	-0.00038604	-0.0093413	-4.0753E-06	436.2655434104084	81.235	1.4315	79.587	79.164	80.596	-1.6485	0.19428	-0.00040111	NaN	65.803	51	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102910			7092	4713	5705	5714							0.07702972902836791
EIAAKLNI	8	Unmodified	_EIAAKLNI_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-2|BLTP1;ENST00000470182.1_1_4:123167396-123168562:+|nuORF	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	436.26601	870.517468	-0.1935	-8.4417E-05	0.28355	0.0001237	0.090047	3.9284E-05	436.26606334664297	81.603	1.1534	79.281	79.007	80.161	-2.3226	-0.11154	0.00061837	NaN	65.803	44	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221220			7093	4713	5705	5714							0.07702972902836791
EIACRLTGFLF	11	Unmodified	_EIACRLTGFLF_					0	0	0		ENSG00000144230|ENST00000486700|GPR17;nc|ENSG00000144230|Q13304|GPR17;ENST00000486700.1_1_2:128403737-128409326:+|nuORF	ENSG00000144230|ENST00000486700|GPR17	ENSG00000144230|ENST00000486700|GPR17	MULTI-SECPEP	OvCa99_classI_Rep5	1	634.8153076171875	2	635.336641	1268.65873	2.2125	0.0014057	-0.6799	-0.00043196	1.5326	0.00097373	635.3359962958361	96.912	0.42423	96.912	96.668	97.093	0					14	9	2	0	0	0	0.025759	1	10642	10642		28.081	9.8194	1	280790			7094	5137	5706	5715	8236	8236					0.03514603213807277
EIACRLTGFLF	11	Unmodified	_EIACRLTGFLF_					0	0	0		ENSG00000144230|ENST00000486700|GPR17;nc|ENSG00000144230|Q13304|GPR17;ENST00000486700.1_1_2:128403737-128409326:+|nuORF	ENSG00000144230|ENST00000486700|GPR17	ENSG00000144230|ENST00000486700|GPR17	MULTI-MATCH	OvCa9_classI_Rep2	2		2	635.336641	1268.65873	-0.9576	-0.0006084	1.6816	0.0010684	0.72396	0.00045996	635.3375836610179	97.838	0.68414	96.879	96.612	97.296	-0.95856	-0.015709	0.00086159	NaN	35.152	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11472			7095	5137	5706	5715							0.03514603213807277
EIACRLTGFLF	11	Unmodified	_EIACRLTGFLF_					0	0	0		ENSG00000144230|ENST00000486700|GPR17;nc|ENSG00000144230|Q13304|GPR17;ENST00000486700.1_1_2:128403737-128409326:+|nuORF	ENSG00000144230|ENST00000486700|GPR17	ENSG00000144230|ENST00000486700|GPR17	MULTI-MATCH	OvCa9_classI_Rep3	3		2	635.336641	1268.65873	-0.050769	-3.2255E-05	0.87016	0.00055284	0.81939	0.00052059	635.3373971921825	98.626	0.62283	96.941	96.595	97.217	-1.685	0.046143	-0.00016944	NaN	35.152	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19305			7096	5137	5706	5715							0.03514603213807277
EIACRLTGFLF	11	Unmodified	_EIACRLTGFLF_					0	0	0		ENSG00000144230|ENST00000486700|GPR17;nc|ENSG00000144230|Q13304|GPR17;ENST00000486700.1_1_2:128403737-128409326:+|nuORF	ENSG00000144230|ENST00000486700|GPR17	ENSG00000144230|ENST00000486700|GPR17	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	635.336641	1268.65873	-0.20261	-0.00012873	0.79988	0.00050819	0.59726	0.00037946	635.3369993801714	99.173	0.88124	96.847	96.33	97.212	-2.3253	-0.047632	-0.00025874	NaN	35.152	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11445			7097	5137	5706	5715							0.03514603213807277
EIADAAFAHI	10	Unmodified	_EIADAAFAHI_					0	0	0		tr|A0A553SKU9|A0A553SKU9_NIACIAminopeptidasePfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_19425PE=4SV=1	tr|A0A553SKU9|A0A553SKU9_NIACIAminopeptidasePfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_19425PE=4SV=1	tr|A0A553SKU9|A0A553SKU9_NIACIAminopeptidasePfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_19425PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.8047485351562	2	529.269281	1056.52401	-1.1977	-0.00063389	0.51272	0.00027137	-0.68495	-0.00036252	529.2719458438196	105.99	0.66104	103.98	103.6	104.26	-2.0161					22	12	4	0	0	0	0.026752	1	9644	9644		35.618	20.285	1	18230			7098	33656	5707	5716	8237	8237					-0.001991339364394662
EIADDKLVI	9	Unmodified	_EIADDKLVI_					0	0	0		tr|A0A7D6VPT2|A0A7D6VPT2_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12890PE=3SV=1	tr|A0A7D6VPT2|A0A7D6VPT2_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12890PE=3SV=1	tr|A0A7D6VPT2|A0A7D6VPT2_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12890PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.1692810058594	2	508.28714	1014.55973	-0.55971	-0.00028449	-4.3	-0.0021856	-4.8597	-0.0024701	508.2856301592167	99.019	0.57007	96.694	96.433	97.003	-2.3253					11	7	2	0	0	0	0.027459	1	8795	8795		44.377	7.2181	1	22122			7099	34795	5708	5717	8238	8238					0.05302903520566815
EIADKLDKV	9	Unmodified	_EIADKLDKV_					0	0	0			REV__ENST00000558066.1_1_15:51507246-51510841:-|nuORF	REV__ENST00000558066.1_1_15:51507246-51510841:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7791748046875	2	515.792589	1029.57063	-1.0182	-0.00052518	0.7426	0.00038303	-0.27561	-0.00014216	515.7930732261896	42.121	0.47646	42.121	41.853	42.329	0					14	10	3	0	0	0	0.027426	1	2687	2687		31.53	0	1	96294	+		7100	19492	5709	5718	8239	8239					0.057023058948516336
EIAHRFKD	8	Unmodified	_EIAHRFKD_					0	0	0		CON__P02769	CON__P02769	CON__P02769	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.7327880859375	2	508.269616	1014.52468	-0.35591	-0.0001809	2.0342	0.0010339	1.6783	0.00085302	508.2702851244652	65.052	0.53104	61.567	61.456	61.987	-3.4854					13	10	2	0	0	0	0.028476	1	4691	4691		47.657	15.702	1	25014		+	7101	618	5710	5719	8240	8240					0.017997055032765275
EIAIGLLGLL	10	Unmodified	_EIAIGLLGLL_					0	0	0			REV__chr19:49497432-49497520|166|18.1|0.83|4.45|+|0|None,RPS11|1	REV__chr19:49497432-49497520|166|18.1|0.83|4.45|+|0|None,RPS11|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.27459716796875	2	506.326068	1010.63758	-0.1708	-8.6483E-05	0.25251	0.00012785	0.081705	4.1369E-05	506.32431863378287	90.478	0.30734	87.903	87.7	88.007	-2.575					8	5	2	0	0	0	0.026752	1	7777	7777		44.117	8.4985	1	6220.6	+		7102	15979	5711	5720	8241	8241					0.13268961176606808
EIAIVKVPI	9	Unmodified	_EIAIVKVPI_					0	0	0			REV__ENSG00000181291|ENST00000631683|TMEM132E	REV__ENSG00000181291|ENST00000631683|TMEM132E	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.3170166015625	2	491.320786	980.627018	-0.24554	-0.00012064	-0.080061	-3.9336E-05	-0.3256	-0.00015998	491.32065486675265	99.146	1.5401	96.821	96.588	98.128	-2.3253					51	29	2	0	0	0	0.027426	1	8877	8877		31.53	11.533	1	226490	+		7103	22225	5712	5721	8242	8242					0.1359297852217196
EIAKLMKTI	9	Unmodified	_EIAKLMKTI_					0	0	0			REV__ENSG00000079101|ENST00000692774|CLUL1	REV__ENSG00000079101|ENST00000692774|CLUL1	MSMS	OvCa9_classI_Rep2	2	523.8158569335938	2	523.817553	1045.62055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.33	1	122.11	121.61	122.61	-0.21803								0	0	0	0.094478	1	11842	11842		71.877	1.0613	1		+		7104	17032	5713	5722	8243	8243					0.09956717299155571
EIAKRLEK	8	Unmodified	_EIAKRLEK_					0	0	0			REV__nc|ENSG00000114859|P51788-4|CLCN2	REV__nc|ENSG00000114859|P51788-4|CLCN2	MULTI-SECPEP	OvCa9_classI_Rep2	2	494.7667236328125	2	493.803291	985.59203	0.57733	0.00028509	-1.1336	-0.00055975	-0.55623	-0.00027467	493.8026289298599	70.45	0.39973	67.88	67.714	68.114	-2.5707					12	7	2	0	0	0	0.028476	1	5653	5653		14.137	0	1	10140	+		7105	16147	5714	5723	8244	8244					0.09865735714231505
EIALKSVSSS	10	Unmodified	_EIALKSVSSS_					0	0	0			REV__tr|A0A7D6ZWX4|A0A7D6ZWX4_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20845PE=3SV=1	REV__tr|A0A7D6ZWX4|A0A7D6ZWX4_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20845PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.76385498046875	2	510.782222	1019.54989	0.92111	0.00047049	0.18903	9.6551E-05	1.1101	0.00056704	510.78228119520674	41.823	0.98635	39.113	38.881	39.868	-2.7097					27	19	2	0	0	0	0.026714	1	2293	2293		35.152	4.6484	1	38269	+		7106	32304	5715	5724	8245	8245					0.04089715515203807
EIAMATTYGF	10	Unmodified	_EIAMATTYGF_					0	0	0			REV__ENSG00000198695|ENST00000361681|MT-ND6	REV__ENSG00000198695|ENST00000361681|MT-ND6	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.7841796875	2	552.257525	1102.5005	1.7164	0.00094788	3.7214	0.0020552	5.4378	0.0030031	552.259299683983	117.31	0.23421	117.31	117.13	117.37	0					7	4	2	0	0	0	0.026956	1	13433	13433		34.173	15.848	1	34121	+		7107	23045	5716	5725	8246	8246					-0.04665315765282685
EIARTVQIL	9	Unmodified	_EIARTVQIL_					0	0	0		ENST00000588524.5_1_19:11687775-11688428:-|nuORF;ENSG00000102575|ENST00000648477|ACP5	ENST00000588524.5_1_19:11687775-11688428:-|nuORF	ENST00000588524.5_1_19:11687775-11688428:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	521.8142700195312	2	521.816399	1041.61824	0.45107	0.00023538	-0.20287	-0.00010586	0.2482	0.00012951	521.8161309836105	110.4	1.9235	110.23	109.86	111.78	-0.17237					90	38	4	0	0	0	0.10363	1	10415	10415		96.19	5.8206	1	440840			7108	2244	5717	5726	8247	8247					0.09910004885705348
EIARTVQIL	9	Unmodified	_EIARTVQIL_					0	0	0		ENST00000588524.5_1_19:11687775-11688428:-|nuORF;ENSG00000102575|ENST00000648477|ACP5	ENST00000588524.5_1_19:11687775-11688428:-|nuORF	ENST00000588524.5_1_19:11687775-11688428:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	521.81494140625	2	521.816399	1041.61824	1.2388	0.00064644	-1.0859	-0.00056666	0.15289	7.9782E-05	521.8156556672232	111.31	1.926	110.21	109.9	111.83	-1.1038					90	38	4	0	0	0	0.2422	1	8074	8074		69.628	9.3337	1	431530			7109	2244	5717	5726	8248	8248					0.09910004885705348
EIASAYLIF	9	Unmodified	_EIASAYLIF_					0	0	0		nc|ENSG00000143199|Q96PN6-4|ADCY10;nc|ENSG00000143199|Q96PN6-2|ADCY10;ENSG00000143199|ENST00000367851|ADCY10	nc|ENSG00000143199|Q96PN6-4|ADCY10	nc|ENSG00000143199|Q96PN6-4|ADCY10	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.2964477539062	2	513.778951	1025.54335	1.9973	0.0010262	2.9482	0.0015147	4.9456	0.0025409	513.780399808868	137.57	0.51663	137.57	137.35	137.87	0					12	10	2	0	0	0	0.027462	1	16057	16057		42.474	10.52	1	30946			7110	5021	5718	5727	8249	8249					0.031598223544506254
EIATLFLSVE	10	Unmodified	_EIATLFLSVE_					0	0	0			REV__ENSG00000127804|ENST00000263092|METTL16	REV__ENSG00000127804|ENST00000263092|METTL16	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.2824096679688	2	561.308072	1120.60159	3.3586	0.0018852	-1.8925	-0.0010623	1.4661	0.00082293	561.3068211183181	98.976	0.38935	98.976	98.725	99.115	0					13	9	2	0	0	0	0.026635	1	10910	10910		31.53	0	1	602500	+		7111	18826	5719	5728	8250	8250					0.04611459209104396
EIATYRKLL	9	Unmodified	_EIATYRKLL_					0	0	0		CON__H-INV:HIT000292931;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000483942.1_1_3:63082233-63082356:-|nuORF;ENSG00000139648|ENST00000267119|KRT71;ENSG00000185069|ENST00000332411|KRT76;CON__Q01546;CON__P12035;ENSG00000186442|ENST00000417996|KRT3;CON__P19013;ENSG00000186049|ENST00000305748|KRT73;CON__Q32MB2;CON__Q6NXH9;CON__Q9R0H5;ENSG00000170477|ENST00000551956|KRT4;CON__Q3SY84;nc|ENSG00000135406|P41219-2|PRPH;ENSG00000135406|ENST00000257860|PRPH;nc|ENSG00000131095|P14136-2|GFAP;ENSG00000131095|ENST00000588735|GFAP;nc|ENSG00000131095|P14136-3|GFAP;CON__Q3TTY5;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;ENST00000562317.1_1_16:78082520-78083381:-|nuORF;ENST00000548657.5_1_12:52639243-52641994:+|nuORF;ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|2|fusion;PPFIBP1-VIM|1|fusion;ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENST00000552322.5_1_12:52638288-52642544:+|nuORF;CON__Q9DCV7;DTX4-KRT7|1|fusion;ENSG00000175084|ENST00000373960|DES;CON__Q5XQN5;CON__Q922U2;nc|ENSG00000170486|Q14CN4-3|KRT72;nc|ENSG00000170486|Q14CN4-2|KRT72;ENSG00000170486|ENST00000293745|KRT72;CON__Q14CN4-1;CON__P07744;ENSG00000170454|ENST00000252245|KRT75;CON__O95678;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;ENSG00000170484|ENST00000305620|KRT74;CON__Q7RTS7;CON__REFSEQ:XP_092267;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538;CON__P50446;CON__Q8VED5	CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8;ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|1|fusion;ENSG00000135480|ENST00000331817|KRT7;DTX4-KRT7|1|fusion;ENSG00000175084|ENST00000373960|DES;CON__Q5XQN5;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000170484|ENST00000305620|KRT74;CON__REFSEQ:XP_092267;ENSG00000185479|ENST00000252252|KRT6B;CON__P50446;CON__Q8VED5	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa9_classI_Rep2	2	553.82958984375	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.61208	1	14186	14186		30.504	0	1	245610		+	7112	1049;622;646;610;15514;764;7513;653;627;667;620;661;656;630	5720	5729	8251	8251					0.10094577919812764
EIAVAKFVE	9	Unmodified	_EIAVAKFVE_					0	0	0			REV__tr|A0A553STD7|A0A553STD7_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04670PE=3SV=1	REV__tr|A0A553STD7|A0A553STD7_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04670PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.8306579589844	2	503.2844	1004.55425	-0.41472	-0.00020872	-3.7759	-0.0019004	-4.1906	-0.0021091	503.7836827647328	58.911	0.7347	58.911	58.53	59.265	0					28	18	2	0	0	0	0.027462	1	4996	4996		19.104	1.7386	1	2244500	+		7113	30952	5721	5730	8252	8252					0.05215224728760859
EIAWIKSAVA	10	Unmodified	_EIAWIKSAVA_					0	0	0			REV__tr|A0A553SNP0|A0A553SNP0_NIACIRibosomeprotectionproteinVmlROS=NialliacirculansOX=1397GN=vmlRPE=3SV=1	REV__tr|A0A553SNP0|A0A553SNP0_NIACIRibosomeprotectionproteinVmlROS=NialliacirculansOX=1397GN=vmlRPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	543.834716796875	2	544.310949	1086.60735	0.38064	0.00020719	-4.2623	-0.00232	-3.8816	-0.0021128	544.3083932446477	30.42	0.59237	27.711	27.557	28.15	-2.7097					15	11	2	0	0	0	0.026522	1	822	822		85.161	5.4482	1	16933	+		7114	30436	5722	5731	8253	8253					0.06750602511419856
EIAYLHVQV	9	Unmodified	_EIAYLHVQV_					0	0	0		MFAP3|p.A313_V314insYLH|1|0.05|ENSG00000037749|chr5:154053563-154053564|-/TACCTTCAC|inframe_insertion	MFAP3|p.A313_V314insYLH|1|0.05|ENSG00000037749|chr5:154053563-154053564|-/TACCTTCAC|inframe_insertion	MFAP3|p.A313_V314insYLH|1|0.05|ENSG00000037749|chr5:154053563-154053564|-/TACCTTCAC|inframe_insertion	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.3059692382812	2	536.295299	1070.57605	0.30197	0.00016195	-3.2184	-0.001726	-2.9164	-0.0015641	536.2936944909916	76.448	0.88554	74.076	73.62	74.505	-2.3715					8	5	2	0	0	0	0.027461	1	3971	3971		49.442	15.269	1	1081900			7115	14838	5723	5732	8254	8254					0.04358029477339187
EICKDLLGP	9	Carbamidomethyl (C)	_EIC(Carbamidomethyl (C))KDLLGP_	EIC(1)KDLLGP		EIC(59)KDLLGP		0	1	0		nc|ENSG00000100084|P54198-2|HIRA;ENSG00000100084|ENST00000263208|HIRA	nc|ENSG00000100084|P54198-2|HIRA	nc|ENSG00000100084|P54198-2|HIRA	MULTI-MSMS	OvCa99_classI_Rep5	1	522.776611328125	2	522.773342	1043.53213	-1.0628	-0.00055561	4.4572	0.0023301	3.3943	0.0017745	522.77571345136	36.187	0.59082	36.187	35.984	36.575	0					20	12	2	0	0	0	0.33652	1	1885	1885		58.782	11.125	1	519440			7116	2005	5724	5733	8255	8255	14				0.012106769886941038
EIDAAILRSQQ	11	Unmodified	_EIDAAILRSQQ_					0	0	0		nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST	nc|ENSG00000151914|Q03001|DST	nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	OvCa9_classI_Rep4_	4	415.7230224609375	3	415.226215	1242.65681	-0.83375	-0.0003462	-0.92658	-0.00038474	-1.7603	-0.00073094	415.22564463468655	45.66	1.0981	42.621	42.23	43.328	-3.0385					35	20	2	0	0	0	0.026068	1	2392	2392		21.78	2.5177	1	31900			7117	5594	5725	5734	8256	8256					0.04519265729572908
EIDALRKAC	9	Unmodified	_EIDALRKAC_					0	0	0			REV__tr|A0A7D7AC52|A0A7D7AC52_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17815PE=4SV=1	REV__tr|A0A7D7AC52|A0A7D7AC52_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17815PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.8043518066406	2	509.771134	1017.52771	-0.25465	-0.00012981	-2.8372	-0.0014463	-3.0918	-0.0015761	509.76953807920165	56.127	0.69345	56.127	55.845	56.538	0					37	16	3	0	0	0	0.027462	1	4619	4619		25.574	6.4705	1	1922900	+		7118	32685	5726	5735	8257	8257					0.019652125657671604
EIDECHKV	8	Unmodified	_EIDECHKV_					0	0	0			REV__ACAP2|p.G564Afs*7|1|0.05|ENSG00000114331|chr3:195294793-195294794|-/G|frameshift_variant	REV__ACAP2|p.G564Afs*7|1|0.05|ENSG00000114331|chr3:195294793-195294794|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.2652587890625	2	486.726392	971.438231	-0.079097	-3.8499E-05	1.4551	0.00070823	1.376	0.00066973	486.72716918604306	68.986	0.34161	65.496	65.312	65.654	-3.4902					10	6	2	0	0	0	0.028476	1	5159	5159		38.806	1.647	1	9926.2	+		7119	15555	5727	5736	8258	8258					-0.04863042113595384
EIDGNNTKL	9	Unmodified	_EIDGNNTKL_					0	0	0			REV__tr|A0A553SH17|A0A553SH17_NIACIDUF4097domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11965PE=4SV=1	REV__tr|A0A553SH17|A0A553SH17_NIACIDUF4097domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11965PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	502.2584533691406	2	502.256371	1002.49819	-0.77753	-0.00039052	0.77108	0.00038728	-0.006454	-3.2416E-06	502.25664053782316	53.378	0.51974	53.378	53.172	53.692	0					19	11	2	0	0	0	0.070405	1	4244	4244		107.01	8.3781	1	1117200	+		7120	29764	5728	5737	8259	8259					-0.0029602817870681974
EIDGNNTKL	9	Unmodified	_EIDGNNTKL_					0	0	0			REV__tr|A0A553SH17|A0A553SH17_NIACIDUF4097domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11965PE=4SV=1	REV__tr|A0A553SH17|A0A553SH17_NIACIDUF4097domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11965PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	502.256371	1002.49819	-0.77753	-0.00039052	0.77108	0.00038728	-0.006454	-3.2416E-06	502.25664053782316	53.378	0.51974	53.378	53.172	53.692	0	0	0	NaN	107.01	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1117200	+		7121	29764	5728	5737							-0.0029602817870681974
EIDKLFRIEE	10	Unmodified	_EIDKLFRIEE_					0	0	0			REV__tr|A0A7D6W127|A0A7D6W127_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02170PE=4SV=1	REV__tr|A0A7D6W127|A0A7D6W127_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02170PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	646.3464965820312	2	646.34826	1290.68197	-1.2412	-0.00080222	-0.71671	-0.00046324	-1.9579	-0.0012655	646.3477237536227	39.942	1.5339	37.233	37.002	38.536	-2.7097					82	30	4	0	0	0	0.4826	1	1979	1979		44.377	0	1	358920	+		7122	31873	5729	5738	8260	8260					0.048253205321543646
EIDMHPIDM	9	Unmodified	_EIDMHPIDM_					0	0	0			REV__ENST00000426688.1_1_1:81674334-81674790:+|nuORF	REV__ENST00000426688.1_1_1:81674334-81674790:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3182983398438	2	550.741185	1099.46782	-0.8065	-0.00044417	1.1729	0.00064597	0.36642	0.0002018	550.7418996354271	53.691	0.42656	53.691	53.347	53.774	0					12	9	2	0	0	0	0.027462	1	4266	4266		55.504	14.932	1	332100	+		7123	25670	5730	5739	8261	8261					-0.07793846159779605
EIDQASLLVIL	11	Unmodified	_EIDQASLLVIL_					0	0	0		ENSG00000182447|ENST00000327928|OTOL1	ENSG00000182447|ENST00000327928|OTOL1	ENSG00000182447|ENST00000327928|OTOL1	MULTI-MSMS	OvCa9_classI_Rep2	2	405.23828125	3	405.239461	1212.69655	1.178	0.00047739	-3.3281	-0.0013487	-2.1501	-0.00087131	405.2380980368008	45.582	1.7446	42.872	42.448	44.192	-2.7097					104	34	5	0	0	0	0.54114	1	2652	2652		50.034	5.3941	1	1021000			7124	8000	5731	5740	8262	8262					0.09871392680292956
EIDSLLSNI	9	Unmodified	_EIDSLLSNI_					0	0	0		tr|A0A7D7A097|A0A7D7A097_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23245PE=4SV=1	tr|A0A7D7A097|A0A7D7A097_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23245PE=4SV=1	tr|A0A7D7A097|A0A7D7A097_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23245PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.2584533691406	2	502.268947	1002.52334	-0.53076	-0.00026659	1.6538	0.00083066	1.1231	0.00056408	502.2697225803738	53.835	0.98697	53.835	53.347	54.334	0					56	23	3	0	0	0	0.027017	1	4244	4244		93.195	0	1	834190			7125	35991	5732	5741	8263	8263					0.02218026623870628
EIDTYKKV	8	Unmodified	_EIDTYKKV_					0	0	0		tr|A0A7D6VVE1|A0A7D6VVE1_9CLOTChromosomepartitionproteinSmcOS=ClostridiumintestinaleOX=36845GN=smcPE=3SV=1	tr|A0A7D6VVE1|A0A7D6VVE1_9CLOTChromosomepartitionproteinSmcOS=ClostridiumintestinaleOX=36845GN=smcPE=3SV=1	tr|A0A7D6VVE1|A0A7D6VVE1_9CLOTChromosomepartitionproteinSmcOS=ClostridiumintestinaleOX=36845GN=smcPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.7992248535156	2	498.274032	994.533512	-0.13745	-6.8485E-05	-0.22769	-0.00011345	-0.36513	-0.00018194	498.27359655753247	70.983	0.86687	70.983	70.681	71.548	0					37	21	2	0	0	0	0.028476	1	6912	6912		21.96	0	1	1003300			7126	35218	5733	5742	8264	8264					0.03602634349101663
EIDWETEN	8	Unmodified	_EIDWETEN_					0	0	0		nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11	nc|ENSG00000015171|Q15326-6|ZMYND11	nc|ENSG00000015171|Q15326-6|ZMYND11	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.3248901367188	2	518.216911	1034.41927	0.81125	0.00042041	3.1747	0.0016452	3.9859	0.0020656	518.2180323748855	104.81	0.30959	103.47	103.21	103.52	-1.3482					6	5	2	0	0	0	0.028476	1	7295	7295		23.042	0	1	10474			7127	1002	5734	5743	8265	8265					-0.09656300203664614
EIEEKNQPL	9	Unmodified	_EIEEKNQPL_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20;REV__UTP20|p.S1763A|1|0.07|ENSG00000120800|chr12:101355011-101355011|T/G|missense_variant	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.8261108398438	2	550.285128	1098.5557	1.8744	0.0010314	2.0365	0.0011207	3.9109	0.0021521	550.2861988862719	85.668	0.16068	85.668	85.544	85.705	0					5	3	2	0	0	0	0.027118	1	8996	8996		84.916	0	1	135110	+		7128	18516;32752	5735	5744	8266	8266					0.01036814026861066
EIEEKNQPL	9	Unmodified	_EIEEKNQPL_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20;REV__UTP20|p.S1763A|1|0.07|ENSG00000120800|chr12:101355011-101355011|T/G|missense_variant	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-MATCH	OvCa9_classI_Rep3	3		2	550.285128	1098.5557	-1.2102	-0.00066598	2.1738	0.0011962	0.96352	0.00053021	550.7892308919812	87.721	0.67032	85.544	85.087	85.757	-2.1768	-0.062026	7.4147E-05	NaN	84.916	13	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8274.9	+		7129	18516;32752	5735	5744							0.01036814026861066
EIEERGVKL	9	Unmodified	_EIEERGVKL_					0	0	0		ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000366210.2_1_2:242263647-242276275:+|nuORF;ENST00000467971.5_1_2:242255375-242276932:+|nuORF;ENST00000473479.5_1_2:242274588-242275589:+|nuORF	ENSG00000168385|ENST00000391971|SEPTIN2	ENSG00000168385|ENST00000391971|SEPTIN2	MULTI-MSMS	OvCa99_classI_Rep5	1	536.8054809570312	2	536.803488	1071.59242	-0.19216	-0.00010315	0.8422	0.00045209	0.65004	0.00034894	536.8038477728545	71.488	0.47777	71.488	71.23	71.707	0					35	11	4	0	0	0	0.035142	1	6910	6910		131.03	14.128	1	6526200			7130	6897	5736	5745	8267	8267					0.059491106434506946
EIEGKKKSAK	10	Unmodified	_EIEGKKKSAK_					0	0	0		ENST00000435590.1_1_21:46097057-46097849:-|nuORF	ENST00000435590.1_1_21:46097057-46097849:-|nuORF	ENST00000435590.1_1_21:46097057-46097849:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	559.3334350585938	2	559.332413	1116.65027	0.059927	3.3519E-05	2.2701	0.0012697	2.33	0.0013032	559.3337743770333	105.67	2.6036	104.33	103.89	106.49	-1.3482					139	50	4	0	0	0	0.36605	1	7444	7444		72.879	5.9173	1	6929000			7131	11865	5737	5746	8268	8268					0.09661372568848492
EIEGLISAH	9	Unmodified	_EIEGLISAH_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.315673828125	2	484.756007	967.497461	-0.12812	-6.2106E-05	1.834	0.00088906	1.7059	0.00082695	484.75622694851603	69.323	0.56527	69.323	69.106	69.672	0					18	13	3	0	0	0	0.027448	1	6604	6604		44.117	12.162	1	242900			7132	3986	5738	5747	8269	8269					0.012411771722327103
EIEIIGANENN	11	Unmodified	_EIEIIGANENN_					0	0	0		tr|A0A553SJ14|A0A553SJ14_NIACIUvrABCsystemproteinAOS=NialliacirculansOX=1397GN=uvrAPE=3SV=1	tr|A0A553SJ14|A0A553SJ14_NIACIUvrABCsystemproteinAOS=NialliacirculansOX=1397GN=uvrAPE=3SV=1	tr|A0A553SJ14|A0A553SJ14_NIACIUvrABCsystemproteinAOS=NialliacirculansOX=1397GN=uvrAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	608.2975463867188	2	608.296224	1214.5779	-0.93087	-0.00056624	1.8263	0.0011109	0.89545	0.0005447	608.2971907887074	58.323	2.9269	55.538	54.93	57.857	-2.7848					145	56	4	0	0	0	0.61983	1	4181	4181		42.864	6.4175	1	664310			7133	33453	5739	5748	8270	8270					-0.02081006295361476
EIEKFDYL	8	Unmodified	_EIEKFDYL_					0	0	0		tr|A0A7D6VR27|A0A7D6VR27_9CLOTNAD(P)/FAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17575PE=4SV=1	tr|A0A7D6VR27|A0A7D6VR27_9CLOTNAD(P)/FAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17575PE=4SV=1	tr|A0A7D6VR27|A0A7D6VR27_9CLOTNAD(P)/FAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17575PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.317626953125	2	528.76604	1055.51753	-0.92127	-0.00048714	1.5328	0.00081051	0.61156	0.00032337	528.7664994172859	102.15	0.25874	100.63	100.53	100.79	-1.5211					6	4	2	0	0	0	0.028476	1	7026	7026		93.195	7.836	1	8798.3			7134	34888	5740	5749	8271	8271					-0.00801071887804028
EIELDKLSL	9	Unmodified	_EIELDKLSL_					0	0	0			REV__nc|ENSG00000101745|Q6UB98-2|ANKRD12	REV__nc|ENSG00000101745|Q6UB98-2|ANKRD12	MULTI-MSMS	OvCa99_classI_Rep5	1	530.3004150390625	2	530.300247	1058.58594	1.4586	0.00077352	1.4186	0.00075226	2.8772	0.0015258	530.3009635663805	109.11	0.92545	109.11	108.85	109.77	0					37	20	3	0	0	0	0.16562	1	12348	12348		82.241	4.9229	1	1364100	+		7135	17515	5741	5750	8272	8272					0.05899172692056709
EIELDKLSL	9	Unmodified	_EIELDKLSL_					0	0	0			REV__nc|ENSG00000101745|Q6UB98-2|ANKRD12	REV__nc|ENSG00000101745|Q6UB98-2|ANKRD12	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.300247	1058.58594	-0.5885	-0.00031208	-1.7298	-0.00091731	-2.3183	-0.0012294	530.2993038303123	109.26	0.79114	109.09	108.52	109.31	-0.17237	-0.0097875	-0.0028325	NaN	82.241	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20782	+		7136	17515	5741	5750							0.05899172692056709
EIEPSAQAKPE	11	Unmodified	_EIEPSAQAKPE_					0	0	0		ENSG00000158301|ENST00000483720|GPRASP2	ENSG00000158301|ENST00000483720|GPRASP2	ENSG00000158301|ENST00000483720|GPRASP2	MULTI-MSMS	OvCa99_classI_Rep5	1	599.802978515625	2	599.801143	1197.58773	1.866	0.0011192	1.2199	0.00073172	3.086	0.001851	599.8017676798917	129.29	2.8297	129.29	128.84	131.67	0					131	59	3	0	0	0	0.50761	1	14987	14987		53.089	3.5529	1	262510			7137	5945	5742	5751	8273	8273					-0.0031581829000515427
EIEQIDRLDN	10	Unmodified	_EIEQIDRLDN_					0	0	0		tr|A0A553SQR0|A0A553SQR0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_08030PE=4SV=1	tr|A0A553SQR0|A0A553SQR0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_08030PE=4SV=1	tr|A0A553SQR0|A0A553SQR0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_08030PE=4SV=1	MSMS	OvCa9_classI_Rep4_	4	415.5599365234375	3	415.542091	1243.60444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.23	1	18.891	18.391	19.391	-1.3386								0	0	0	0.1384	1	26	26		23.378	0	1				7138	34187	5743	5752	8274	8274					-0.007613174040443482
EIERQKEML	9	Unmodified	_EIERQKEML_					0	0	0		nc|ENSG00000131323|Q13114-2|TRAF3;ENSG00000131323|ENST00000392745|TRAF3	nc|ENSG00000131323|Q13114-2|TRAF3	nc|ENSG00000131323|Q13114-2|TRAF3	MULTI-MSMS	OvCa99_classI_Rep5	1	588.3085327148438	2	588.308081	1174.60161	-0.67736	-0.0003985	-0.67915	-0.00039955	-1.3565	-0.00079805	588.3079694282976	59.138	3.8097	59.138	58.852	62.661	0					260	93	6	0	0	0	0.13482	1	5086	5086		87.754	0.057861	1	221970000			7139	4054	5744	5753	8275	8275					0.021291359374572494
EIERQRKML	9	Unmodified	_EIERQRKML_					0	0	0		nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	602.2825927734375	2	601.837339	1201.66013	1.7556	0.0010566	-2.4509	-0.0014751	-0.6953	-0.00041846	601.8356423976306	148.87	0.53784	148.87	148.67	149.21	0					15	10	2	0	0	0	0.027462	1	17462	17462		20.947	0	1	42271			7140	5315	5745	5754	8276	8276					0.06736237302584414
EIETGQYNVK	10	Unmodified	_EIETGQYNVK_					0	0	0			REV__tr|A0A7D6VUS3|A0A7D6VUS3_9CLOTLysine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=lysSPE=3SV=1	REV__tr|A0A7D6VUS3|A0A7D6VUS3_9CLOTLysine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=lysSPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	590.7962036132812	2	590.79586	1179.57717	-0.29759	-0.00017582	-2.2996	-0.0013586	-2.5972	-0.0015344	590.7944256434739	56.03	0.81703	56.03	55.845	56.662	0					51	19	5	0	0	0	0.38315	1	4618	4618		70.816	5.659	1	8348300	+		7141	31692	5746	5755	8277	8277					-0.005438009444560521
EIETGQYNVK	10	Unmodified	_EIETGQYNVK_					0	0	0			REV__tr|A0A7D6VUS3|A0A7D6VUS3_9CLOTLysine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=lysSPE=3SV=1	REV__tr|A0A7D6VUS3|A0A7D6VUS3_9CLOTLysine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=lysSPE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	590.79586	1179.57717	-0.29759	-0.00017582	-2.2996	-0.0013586	-2.5972	-0.0015344	590.7944256434739	56.03	0.81703	56.03	55.845	56.662	0	0	0	NaN	70.816	51	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8348300	+		7142	31692	5746	5755							-0.005438009444560521
EIETLPAKR	9	Unmodified	_EIETLPAKR_					0	0	0			REV__nc|ENSG00000074803|Q13621-3|SLC12A1	REV__nc|ENSG00000074803|Q13621-3|SLC12A1	MULTI-MSMS	OvCa9_classI_Rep2	2	529.3051147460938	2	528.806031	1055.59751	-1.2413	-0.00065642	-1.9712	-0.0010424	-3.2125	-0.0016988	529.3059963064875	103.84	3.275	103.27	102.83	106.11	-0.57639					87	65	2	0	0	0	0.33652	1	9625	9625		58.782	5.4305	1	765080	+		7143	16955	5747	5756	8278	8278					0.07193414506036788
EIEVAEVAYDA	11	Unmodified	_EIEVAEVAYDA_					0	0	0		ENSG00000104497|ENST00000345957|SNX16;nc|ENSG00000104497|P57768-2|SNX16	ENSG00000104497|ENST00000345957|SNX16	ENSG00000104497|ENST00000345957|SNX16	MULTI-MSMS	OvCa9_classI_Rep2	2	604.7890014648438	2	604.787701	1207.56085	1.2772	0.00077244	-0.79595	-0.00048138	0.48126	0.00029106	604.7871279829726	28.54	0.91342	25.831	25.638	26.552	-2.7097					35	19	2	0	0	0	0.72473	1	598	598		19.104	0.84144	1	52739			7144	2380	5748	5757	8279	8279					-0.03462926901170249
EIEVPKVPL	9	Unmodified	_EIEVPKVPL_					0	0	0			REV__ENSG00000154767|ENST00000285021|XPC	REV__ENSG00000154767|ENST00000285021|XPC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.2902221679688	2	512.307875	1022.6012	-1.1908	-0.00061005	2.4992	0.0012803	1.3084	0.00067029	512.3087530916785	45.147	0.77992	42.108	41.867	42.647	-3.0385					35	14	3	0	0	0	0.027462	1	2335	2335		11.511	0	1	59635	+		7145	20397	5749	5758	8280	8280					0.09080084279912626
EIEVYRKT	8	Unmodified	_EIEVYRKT_					0	0	0		FAAH|p.G528Yfs*46|1|0.25|ENSG00000117480|chr1:46413191-46413195|GGGGA/-|frameshift_variant;ENSG00000117480|ENST00000243167|FAAH	FAAH|p.G528Yfs*46|1|0.25|ENSG00000117480|chr1:46413191-46413195|GGGGA/-|frameshift_variant	FAAH|p.G528Yfs*46|1|0.25|ENSG00000117480|chr1:46413191-46413195|GGGGA/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2696533203125	2	519.284931	1036.55531	-0.10714	-5.5637E-05	-0.23541	-0.00012225	-0.34256	-0.00017788	519.2846698812357	71.94	0.45673	71.94	71.668	72.125	0					22	10	3	0	0	0	0.028476	1	6943	6943		24.203	7.7296	1	1030400			7146	3256	5750	5759	8281	8281					0.03849439097666618
EIEVYRKTV	9	Unmodified	_EIEVYRKTV_					0	0	0		FAAH|p.G528Yfs*46|1|0.25|ENSG00000117480|chr1:46413191-46413195|GGGGA/-|frameshift_variant;ENSG00000117480|ENST00000243167|FAAH	FAAH|p.G528Yfs*46|1|0.25|ENSG00000117480|chr1:46413191-46413195|GGGGA/-|frameshift_variant	FAAH|p.G528Yfs*46|1|0.25|ENSG00000117480|chr1:46413191-46413195|GGGGA/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.848388671875	2	568.819138	1135.62372	-0.67465	-0.00038376	0.6109	0.00034749	-0.063758	-3.6267E-05	568.8193379168006	73.201	1.2066	69.804	69.397	70.604	-3.3961					59	24	4	0	0	0	0.027462	1	5661	5661		35.152	12.11	1	597250			7147	3256	5751	5760	8282	8282					0.06133683677512636
EIFCFIIIL	9	Unmodified	_EIFCFIIIL_					0	0	0			REV__ENST00000417404.2_1_17:28960066-28961284:+|nuORF	REV__ENST00000417404.2_1_17:28960066-28961284:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	555.8155517578125	2	555.817021	1109.61949	1.8178	0.0010104	-3.7545	-0.0020868	-1.9367	-0.0010764	555.8147327837876	129.97	0.52318	129.97	129.72	130.25	0					19	10	3	0	0	0	0.19716	1	15073	15073		76.847	30.895	1	61447	+		7148	25560	5752	5761	8283	8283					0.06906502930269198
EIFFTLPF	8	Unmodified	_EIFFTLPF_					0	0	0		ENST00000407308.1_1_22:31062816-31062960:-|nuORF	ENST00000407308.1_1_22:31062816-31062960:-|nuORF	ENST00000407308.1_1_22:31062816-31062960:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.2200012207031	2	507.270761	1012.52697	0.2181	0.00011063	1.4783	0.00074989	1.6964	0.00086053	507.27127949216066	141.55	0.57584	140.09	139.82	140.39	-1.4627					14	10	2	0	0	0	0.028476	1	13802	13802		28.254	0	1	10288			7149	11491	5753	5762	8284	8284					0.021207411883892746
EIFGGLAGFLL	11	Unmodified	_EIFGGLAGFLL_					0	0	0		SLC7A10|p.V320Pfs*36|1|0.04|ENSG00000130876|chr19:33211280-33211283|AGAC/-|frameshift_variant;ENSG00000130876|ENST00000253188|SLC7A10	SLC7A10|p.V320Pfs*36|1|0.04|ENSG00000130876|chr19:33211280-33211283|AGAC/-|frameshift_variant	SLC7A10|p.V320Pfs*36|1|0.04|ENSG00000130876|chr19:33211280-33211283|AGAC/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.8473510742188	2	568.82115	1135.62775	-0.001475	-8.3903E-07	-2.8795	-0.0016379	-2.881	-0.0016388	568.8193687275127	72.035	1.4812	69.433	69.13	70.612	-2.6023					63	29	3	0	0	0	0.025534	1	3390	3390		37.159	24.952	1	366110			7150	4023	5754	5763	8285	8285					0.06535773171253823
EIFHALKTD	9	Unmodified	_EIFHALKTD_					0	0	0		tr|A0A553SR20|A0A553SR20_NIACI2-hydroxy-3-oxopropionatereductaseOS=NialliacirculansOX=1397GN=CEQ21_00220PE=4SV=1	tr|A0A553SR20|A0A553SR20_NIACI2-hydroxy-3-oxopropionatereductaseOS=NialliacirculansOX=1397GN=CEQ21_00220PE=4SV=1	tr|A0A553SR20|A0A553SR20_NIACI2-hydroxy-3-oxopropionatereductaseOS=NialliacirculansOX=1397GN=CEQ21_00220PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.8494262695312	2	537.284931	1072.55531	0.26975	0.00014493	0.78427	0.00042138	1.054	0.00056631	537.7868753085125	84.755	0.81776	82.097	81.78	82.598	-2.6584					36	16	3	0	0	0	0.027461	1	7145	7145		49.442	21.559	1	37830			7151	34221	5755	5764	8286	8286					0.021934390976639406
EIFHALKTD	9	Unmodified	_EIFHALKTD_					0	0	0		tr|A0A553SR20|A0A553SR20_NIACI2-hydroxy-3-oxopropionatereductaseOS=NialliacirculansOX=1397GN=CEQ21_00220PE=4SV=1	tr|A0A553SR20|A0A553SR20_NIACI2-hydroxy-3-oxopropionatereductaseOS=NialliacirculansOX=1397GN=CEQ21_00220PE=4SV=1	tr|A0A553SR20|A0A553SR20_NIACI2-hydroxy-3-oxopropionatereductaseOS=NialliacirculansOX=1397GN=CEQ21_00220PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	537.284931	1072.55531	-1.2461	-0.00066951	2.2914	0.0012311	1.0453	0.0005616	537.2866842286778	83.474	1.0984	81.875	81.594	82.693	-1.5989	-0.16804	0.0023399	NaN	49.442	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20447			7152	34221	5755	5764							0.021934390976639406
EIFHALKTD	9	Unmodified	_EIFHALKTD_					0	0	0		tr|A0A553SR20|A0A553SR20_NIACI2-hydroxy-3-oxopropionatereductaseOS=NialliacirculansOX=1397GN=CEQ21_00220PE=4SV=1	tr|A0A553SR20|A0A553SR20_NIACI2-hydroxy-3-oxopropionatereductaseOS=NialliacirculansOX=1397GN=CEQ21_00220PE=4SV=1	tr|A0A553SR20|A0A553SR20_NIACI2-hydroxy-3-oxopropionatereductaseOS=NialliacirculansOX=1397GN=CEQ21_00220PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	537.284931	1072.55531	0.095471	5.1295E-05	-1.5517	-0.0008337	-1.4562	-0.0007824	537.2842928808341	84.419	0.91354	82.158	81.79	82.704	-2.261	0.11496	-0.0017898	NaN	49.442	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38315			7153	34221	5755	5764							0.021934390976639406
EIFIYYVLL	9	Unmodified	_EIFIYYVLL_					0	0	0		tr|A0A7D6ZYB3|A0A7D6ZYB3_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01475PE=4SV=1	tr|A0A7D6ZYB3|A0A7D6ZYB3_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01475PE=4SV=1	tr|A0A7D6ZYB3|A0A7D6ZYB3_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01475PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	586.8328857421875	2	586.833726	1171.6529	0.72441	0.00042511	1.7624	0.0010342	2.4868	0.0014593	586.8345916755596	91.526	1.7932	90.29	89.742	91.535	-1.2355					89	33	4	0	0	0	0.22913	1	8131	8131		71.378	12.596	1	594470			7154	35913	5756	5765	8287	8287					0.07393827973805855
EIFKFTSI	8	Unmodified	_EIFKFTSI_					0	0	0		tr|A0A553SMS2|A0A553SMS2_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_23110PE=3SV=1	tr|A0A553SMS2|A0A553SMS2_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_23110PE=3SV=1	tr|A0A553SMS2|A0A553SMS2_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_23110PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.3039245605469	2	492.773668	983.532783	0.13007	6.4093E-05	-0.62935	-0.00031013	-0.49928	-0.00024603	492.7731965713385	105.24	0.74126	104.81	104.41	105.15	-0.43642					19	14	2	0	0	0	0.028476	1	9781	9781		26.693	5.746	1	69699			7155	33867	5757	5766	8288	8288					0.04035839700065935
EIFMDEWQWKP	11	Unmodified	_EIFMDEWQWKP_					0	0	0		ENSG00000142185|ENST00000397928|TRPM2;nc|ENSG00000142185|O94759-2|TRPM2;nc|ENSG00000142185|O94759-3|TRPM2	ENSG00000142185|ENST00000397928|TRPM2	ENSG00000142185|ENST00000397928|TRPM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.704345703125	3	503.567472	1507.68059	-0.27532	-0.00013864	2.8499	0.0014351	2.5746	0.0012965	503.56946269666463	56.33	0.36556	56.33	56.094	56.459	0					11	8	2	0	0	0	0.026033	1	4640	4640		28.577	5.1988	1	296190			7156	4959	5758	5767	8289	8289					-0.05294636828284638
EIFPKPPLY	9	Unmodified	_EIFPKPPLY_					0	0	0		nc|ENSG00000177853|Q6AHZ1-2|ZNF518A;ENSG00000177853|ENST00000316045|ZNF518A	nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.7696533203125	2	552.310418	1102.60628	2.0667	0.0011415	2.6102	0.0014416	4.6769	0.0025831	552.3136947387609	76.442	1.0064	76.442	75.996	77.002	0					67	24	5	0	0	0	0.027462	1	7655	7655		21.96	0	1	2380700			7157	7716	5759	5768	8290	8290					0.05908388142529475
EIFPLTVCIV	10	Unmodified	_EIFPLTVCIV_					0	0	0			REV__HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|49|2|sense	REV__HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|49|2|sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.3493041992188	2	567.317386	1132.62022	-1.1611	-0.00065869	-1.2268	-0.00069597	-2.3878	-0.0013547	567.3164874298204	91.741	1.0556	89.717	89.079	90.135	-2.0241					41	20	3	0	0	0	0.026849	1	5770	5770		40.778	3.6191	1	128400	+		7158	28295	5760	5769	8291	8291					0.059212975792888756
EIFPRKDSE	9	Unmodified	_EIFPRKDSE_					0	0	0			REV__nc|ENSG00000100146|P56693-2|SOX10	REV__nc|ENSG00000100146|P56693-2|SOX10	MULTI-MSMS	OvCa99_classI_Rep5	1	560.7907104492188	2	560.785296	1119.55604	0.035137	1.9705E-05	4.2141	0.0023632	4.2492	0.0023829	560.787454351512	59.746	0.94413	59.746	59.533	60.477	0					75	23	4	0	0	0	0.3249	1	5171	5171		60.118	2.307	1	4467700	+		7159	28765	5761	5770	8292	8292					0.0010423374671972852
EIFRKKAL	8	Unmodified	_EIFRKKAL_					0	0	0			REV__tr|A0A7D7A1P8|A0A7D7A1P8_9CLOTUVDNAdamagerepairendonucleaseUvsEOS=ClostridiumintestinaleOX=36845GN=uvsEPE=4SV=1	REV__tr|A0A7D7A1P8|A0A7D7A1P8_9CLOTUVDNAdamagerepairendonucleaseUvsEOS=ClostridiumintestinaleOX=36845GN=uvsEPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	502.8152770996094	2	502.816202	1003.61785	0.75174	0.00037799	-3.2646	-0.0016415	-2.5129	-0.0012635	502.81449604378173	158.53	1.0083	158.53	158.23	159.24	0					53	20	4	0	0	0	0.6962	1	18604	18604		44.117	6.9577	1	885070	+		7160	32505	5762	5771	8293	8293					0.11618629956512905
EIFYLSLRPH	10	Unmodified	_EIFYLSLRPH_					0	0	0		ENST00000330123.9_1_19:52618131-52618170:-|nuORF	ENST00000330123.9_1_19:52618131-52618170:-|nuORF	ENST00000330123.9_1_19:52618131-52618170:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	424.8929138183594	3	425.567912	1273.68191	-0.35621	-0.00015159	-2.7118	-0.001154	-3.068	-0.0013056	425.56671589638233	37.956	0.58739	37.956	37.761	38.348	0					22	12	3	0	0	0	0.027088	1	2150	2150		14.086	6.0517	1	167550			7161	10432	5763	5772	8294	8294					0.05601365322809215
EIGALDLYH	9	Unmodified	_EIGALDLYH_					0	0	0			REV__nc|ENSG00000145506|Q969F2-2|NKD2	REV__nc|ENSG00000145506|Q969F2-2|NKD2	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.81103515625	2	515.763832	1029.51311	-0.72149	-0.00037212	-2.0877	-0.0010768	-2.8092	-0.0014489	515.7630843873378	56.111	1.0903	53.307	53.126	54.216	-2.804					27	21	3	0	0	0	0.027343	1	3985	3985		79.451	15.244	1	73899	+		7162	19966	5764	5773	8295	8295					-0.00046536310719602625
EIGALDLYH	9	Unmodified	_EIGALDLYH_					0	0	0			REV__nc|ENSG00000145506|Q969F2-2|NKD2	REV__nc|ENSG00000145506|Q969F2-2|NKD2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	515.763832	1029.51311	-0.27592	-0.00014231	-3.0075	-0.0015511	-3.2834	-0.0016934	515.7625618433177	56.39	0.6567	53.095	52.819	53.476	-3.2944	-0.10611	-0.00058226	NaN	79.451	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	275310	+		7163	19966	5764	5773							-0.00046536310719602625
EIGALRQE	8	Unmodified	_EIGALRQE_					0	0	0			REV__ENSG00000172572|ENST00000359062|PDE3A	REV__ENSG00000172572|ENST00000359062|PDE3A	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.7661437988281	2	458.248349	914.482145	-0.3099	-0.00014201	0.54066	0.00024776	0.23076	0.00010574	458.2483790742311	54.313	0.8866	54.313	54.048	54.935	0					28	20	2	0	0	0	0.028476	1	4380	4380		49.442	1.7842	1	548690	+		7164	21711	5765	5774	8296	8296					0.02148310375048368
EIGAVSADHLL	11	Unmodified	_EIGAVSADHLL_					0	0	0		tr|A0A553SS59|A0A553SS59_NIACIImidazolonepropionaseOS=NialliacirculansOX=1397GN=hutIPE=3SV=1	tr|A0A553SS59|A0A553SS59_NIACIImidazolonepropionaseOS=NialliacirculansOX=1397GN=hutIPE=3SV=1	tr|A0A553SS59|A0A553SS59_NIACIImidazolonepropionaseOS=NialliacirculansOX=1397GN=hutIPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.2926635742188	2	562.800946	1123.58734	2.4168	0.0013602	4.4891	0.0025265	6.9059	0.0038866	563.3051089222789	107.36	0.25238	107.36	107.14	107.4	0					7	5	2	0	0	0	0.025457	1	12104	12104		44.377	5.1244	1	102900			7165	34335	5766	5775	8297	8297					0.030488067808164487
EIGDKFSSRH	10	Unmodified	_EIGDKFSSRH_					0	0	0		ENSG00000013503|ENST00000228347|POLR3B;nc|ENSG00000013503|Q9NW08-2|POLR3B	ENSG00000013503|ENST00000228347|POLR3B	ENSG00000013503|ENST00000228347|POLR3B	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.3314819335938	2	588.293819	1174.57309	-0.757	-0.00044534	-1.4648	-0.00086173	-2.2218	-0.0013071	588.2924691147181	39.689	0.25124	39.689	39.547	39.798	0					7	5	2	0	0	0	0.027118	1	2347	2347		25.574	1.0549	1	102990			7166	987	5767	5776	8298	8298					-0.007218456474674895
EIGFAEKIEL	10	Unmodified	_EIGFAEKIEL_					0	0	0			REV__tr|A0A553SLE8|A0A553SLE8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20505PE=4SV=1	REV__tr|A0A553SLE8|A0A553SLE8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20505PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	574.8141479492188	2	574.813522	1147.61249	1.5478	0.00088972	-0.65358	-0.00037569	0.89427	0.00051404	574.8131721026027	117.06	1.1559	117.06	116.77	117.93	0					49	24	4	0	0	0	0.030279	1	13406	13406		136.27	13.06	1	1146100	+		7167	30219	5768	5777	8299	8299					0.044588615833845324
EIGFAEKIEL	10	Unmodified	_EIGFAEKIEL_					0	0	0			REV__tr|A0A553SLE8|A0A553SLE8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20505PE=4SV=1	REV__tr|A0A553SLE8|A0A553SLE8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20505PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	574.813522	1147.61249	1.5478	0.00088972	-0.65358	-0.00037569	0.89427	0.00051404	574.8131721026027	117.06	1.1559	117.06	116.77	117.93	0	0.15828	0.00026077	NaN	136.27	49	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1146100	+		7168	30219	5768	5777							0.044588615833845324
EIGFAEKIEL	10	Unmodified	_EIGFAEKIEL_					0	0	0			REV__tr|A0A553SLE8|A0A553SLE8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20505PE=4SV=1	REV__tr|A0A553SLE8|A0A553SLE8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20505PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	574.813522	1147.61249	-1.2858	-0.00073909	-3.2351	-0.0018596	-4.5209	-0.0025987	574.8121236048906	118.09	0.89383	116.75	116.31	117.21	-1.3444	-0.15828	-0.002707	NaN	136.27	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17091	+		7169	30219	5768	5777							0.044588615833845324
EIGGALKNI	9	Unmodified	_EIGGALKNI_					0	0	0		tr|A0A553SL81|A0A553SL81_NIACIGlycerol-3-phosphatedehydrogenase[NAD(P)+]OS=NialliacirculansOX=1397GN=gpsAPE=3SV=1	tr|A0A553SL81|A0A553SL81_NIACIGlycerol-3-phosphatedehydrogenase[NAD(P)+]OS=NialliacirculansOX=1397GN=gpsAPE=3SV=1	tr|A0A553SL81|A0A553SL81_NIACIGlycerol-3-phosphatedehydrogenase[NAD(P)+]OS=NialliacirculansOX=1397GN=gpsAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.2856750488281	2	457.768917	913.523281	-0.2828	-0.00012946	-0.0032044	-1.4669E-06	-0.28601	-0.00013092	457.76898453508414	94.589	1.0513	92.121	91.86	92.912	-2.4685					24	20	2	0	0	0	0.027462	1	8320	8320		47.657	0	1	33231			7170	33693	5769	5778	8300	8300					0.06306071414530834
EIGIISLLY	9	Unmodified	_EIGIISLLY_					0	0	0		tr|A0A7D6ZGC2|A0A7D6ZGC2_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17785PE=4SV=1	tr|A0A7D6ZGC2|A0A7D6ZGC2_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17785PE=4SV=1	tr|A0A7D6ZGC2|A0A7D6ZGC2_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17785PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	511.7706604003906	2	510.802426	1019.5903	0.8907	0.00045497	0.75063	0.00038342	1.6413	0.00083839	510.8026917514014	158.18	0.73401	158.18	157.96	158.69	0					21	15	3	0	0	0	0.55588	1	18524	18524		37.159	0	1	41706			7171	35540	5770	5779	8301	8301					0.08128681905634494
EIGKKVPNT	9	Unmodified	_EIGKKVPNT_					0	0	0			REV__tr|A0A553SFN7|A0A553SFN7_NIACIGTP3',8-cyclaseOS=NialliacirculansOX=1397GN=moaAPE=3SV=1	REV__tr|A0A553SFN7|A0A553SFN7_NIACIGTP3',8-cyclaseOS=NialliacirculansOX=1397GN=moaAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.7679138183594	2	493.287474	984.560395	-0.54147	-0.0002671	0.29536	0.0001457	-0.2461	-0.0001214	493.28742555237545	69.551	0.48372	66.07	65.861	66.345	-3.4812					13	9	2	0	0	0	0.027426	1	5187	5187		39.253	22.78	1	26604	+		7172	29598	5771	5780	8302	8302					0.06749742960278127
EIGKLTPPAIS	11	Unmodified	_EIGKLTPPAIS_					0	0	0		tr|A0A7D6ZI05|A0A7D6ZI05_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_02110PE=3SV=1	tr|A0A7D6ZI05|A0A7D6ZI05_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_02110PE=3SV=1	tr|A0A7D6ZI05|A0A7D6ZI05_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_02110PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.7939453125	2	563.329339	1124.64412	1.4922	0.00084058	-3.6754	-0.0020705	-2.1833	-0.0012299	563.3274588468786	89.351	0.29264	86.748	86.58	86.873	-2.6027					7	5	2	0	0	0	0.025594	1	7662	7662		41.427	7.505	1	16279			7173	35598	5772	5781	8303	8303					0.08678854337313169
EIGLLHTVAR	10	Unmodified	_EIGLLHTVAR_					0	0	0		nc|ENSG00000196371|P22083-2|FUT4;ENSG00000196371|ENST00000358752|FUT4	nc|ENSG00000196371|P22083-2|FUT4	nc|ENSG00000196371|P22083-2|FUT4	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.8497924804688	2	554.827298	1107.64004	-0.074664	-4.1425E-05	1.1325	0.00062833	1.0578	0.0005869	554.8279083661423	30.207	0.74739	30.207	29.885	30.632	0					27	14	3	0	0	0	0.026782	1	1132	1132		37.812	0	1	218740			7174	8599	5773	5782	8304	8304					0.09052809634272307
EIGLTFIT	8	Unmodified	_EIGLTFIT_					0	0	0			REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6	REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6	MULTI-SECPEP	OvCa99_classI_Rep5	1	447.7383728027344	2	447.252569	892.490584	0.79906	0.00035738	-3.9986	-0.0017884	-3.1996	-0.001431	447.25073173090647	46.443	0.38812	46.443	46.242	46.631	0					14	8	2	0	0	0	0.028476	1	3301	3301		31.955	0	1	123710	+		7175	23238	5774	5783	8305	8305					0.040038642916556455
EIGPFIIDSME	11	Unmodified	_EIGPFIIDSME_					0	0	0			REV__tr|A0A7D7A1D0|A0A7D7A1D0_9CLOTSugarkinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03655PE=3SV=1	REV__tr|A0A7D7A1D0|A0A7D7A1D0_9CLOTSugarkinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03655PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	625.281494140625	2	625.802297	1249.59004	1.9848	0.0012421	-2.7195	-0.0017018	-0.73463	-0.00045973	625.8003547014478	74.913	0.57568	74.913	74.676	75.251	0					31	13	3	0	0	0	0.025806	1	7404	7404		24.519	13.008	1	1941700	+		7176	32485	5775	5784	8306	8306					-0.024771058765736598
EIGTAQALLD	10	Unmodified	_EIGTAQALLD_					0	0	0			REV__nc|ENSG00000164597|Q9UP83-3|COG5	REV__nc|ENSG00000164597|Q9UP83-3|COG5	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.78955078125	2	515.774396	1029.53424	-0.22868	-0.00011795	1.7954	0.00092601	1.5667	0.00080806	515.7752310249406	101.8	0.68503	101.8	101.53	102.21	0					28	15	2	0	0	0	0.026659	1	11354	11354		30.318	0	1	1246000	+		7177	20999	5776	5785	8307	8307					0.02065428998139396
EIGTIIRGDPA	11	Unmodified	_EIGTIIRGDPA_					0	0	0			REV__tr|A0A7D7A165|A0A7D7A165_9CLOTRNaseadapterRapZOS=ClostridiumintestinaleOX=36845GN=rapZPE=3SV=1	REV__tr|A0A7D7A165|A0A7D7A165_9CLOTRNaseadapterRapZOS=ClostridiumintestinaleOX=36845GN=rapZPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.7479248046875	2	571.31422	1140.61389	1.3669	0.00078094	0.98391	0.00056212	2.3508	0.0013431	571.3141171454166	108.97	1.6681	108.97	108.28	109.95	0					67	37	3	0	0	0	0.025406	1	12389	12389		72.879	30.015	1	414040	+		7178	32474	5777	5786	8308	8308					0.049204956721496274
EIGVENIRE	9	Unmodified	_EIGVENIRE_					0	0	0		nc|ENSG00000077935|Q8NDV3-2|SMC1B;ENSG00000077935|ENST00000357450|SMC1B	nc|ENSG00000077935|Q8NDV3-2|SMC1B	nc|ENSG00000077935|Q8NDV3-2|SMC1B	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.2786254882812	2	529.77747	1057.54039	-1.8254	-0.00096704	0.4208	0.00022293	-1.4046	-0.00074411	529.7780164398157	95.197	1.7661	92.729	92.36	94.127	-2.4685					117	34	5	0	0	0	0.22621	1	8405	8405		71.877	0.58177	1	2416300			7179	1579	5778	5787	8309	8309					0.01391947229649304
EIGVVDDEALL	11	Unmodified	_EIGVVDDEALL_					0	0	0			REV__ENSG00000108932|ENST00000580666|SLC16A6	REV__ENSG00000108932|ENST00000580666|SLC16A6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	586.835205078125	2	586.805894	1171.59723	-1.2972	-0.0007612	2.4113	0.001415	1.1141	0.00065377	586.8075067478709	92.694	1.0527	90.186	89.959	91.012	-2.5072					62	20	4	0	0	0	0.02567	1	8086	8086		52.937	0	1	308170	+		7180	17911	5779	5788	8310	8310					0.01829949995521929
EIHAIVSRL	9	Unmodified	_EIHAIVSRL_					0	0	0			REV__nc|ENSG00000116497|Q96BU1-2|S100PBP	REV__nc|ENSG00000116497|Q96BU1-2|S100PBP	MULTI-MSMS	OvCa99_classI_Rep5	1	519.31005859375	2	519.308741	1036.60293	-0.89489	-0.00046472	0.59688	0.00030996	-0.29801	-0.00015476	519.308964176834	54.628	0.55738	54.628	54.422	54.98	0					31	12	4	0	0	0	0.37135	1	4422	4422		54.776	1.8396	1	1843600	+		7181	18303	5780	5789	8311	8311					0.08609138088513646
EIHAKNILV	9	Unmodified	_EIHAKNILV_					0	0	0		ENSG00000164296|ENST00000296736|TIGD6	ENSG00000164296|ENST00000296736|TIGD6	ENSG00000164296|ENST00000296736|TIGD6	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.7891235351562	2	518.811116	1035.60768	1.6866	0.00087503	-0.17257	-8.9529E-05	1.514	0.0007855	518.8109676930053	77.341	0.66967	77.341	77.044	77.714	0					26	15	3	0	0	0	0.02741	1	7812	7812		60.972	0	1	632950			7182	6439	5781	5790	8312	8312					0.09130022231261137
EIHEYNQD	8	Unmodified	_EIHEYNQD_					0	0	0		ENSG00000184381|ENST00000332509|PLA2G6;nc|ENSG00000184381|O60733-2|PLA2G6	ENSG00000184381|ENST00000332509|PLA2G6	ENSG00000184381|ENST00000332509|PLA2G6	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.30322265625	2	524.222528	1046.4305	-0.82903	-0.0004346	0.6565	0.00034415	-0.17253	-9.0443E-05	524.2227620684793	44.595	0.49174	44.595	44.44	44.932	0					13	10	2	0	0	0	0.028476	1	3060	3060		42.396	8.2236	1	191840			7183	8154	5782	5791	8313	8313					-0.090854781095004
EIHPLRRWRWH	11	Unmodified	_EIHPLRRWRWH_					0	0	0		CDH12|p.V63Cfs*43|1|0.27|ENSG00000154162|chr5:22078490-22078491|-/A|frameshift_variant	CDH12|p.V63Cfs*43|1|0.27|ENSG00000154162|chr5:22078490-22078491|-/A|frameshift_variant	CDH12|p.V63Cfs*43|1|0.27|ENSG00000154162|chr5:22078490-22078491|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.2896728515625	3	529.291887	1584.85383	-2.0891	-0.0011057	-2.6451	-0.0014	-4.7342	-0.0025058	529.2905130248794	50.56	1.2714	47.386	47.1	48.372	-3.1734					90	24	6	0	0	0	0.72524	1	2918	2918		12.433	2.7867	1	1319500			7184	210	5783	5792	8314	8314					0.08479954853692107
EIHQSTVATL	10	Unmodified	_EIHQSTVATL_					0	0	0			REV__ENSG00000066777|ENST00000262215|ARFGEF1	REV__ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-SECPEP	OvCa9_classI_Rep2	2	549.812255859375	2	549.793121	1097.57169	1.6137	0.00088718	-4.1572	-0.0022856	-2.5435	-0.0013984	549.7909551574103	65.73	0.59565	63.034	62.872	63.467	-2.6958					19	11	2	0	0	0	0.026681	1	5093	5093		29.17	1.2878	1	32041	+		7185	16823	5784	5793	8315	8315					0.02680520263766084
EIHVAQYPL	9	Unmodified	_EIHVAQYPL_					0	0	0		ENSG00000100603|ENST00000261531|SNW1;ENST00000557663.1_1_14:78205086-78227470:-|nuORF	ENSG00000100603|ENST00000261531|SNW1	ENSG00000100603|ENST00000261531|SNW1	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.8329467773438	2	535.287474	1068.5604	3.1901	0.0017076	-1.6274	-0.00087112	1.5627	0.00083649	535.2864762121602	102.48	0.46661	102.48	102.25	102.72	0					17	10	2	0	0	0	0.027462	1	11440	11440		45.952	8.7928	1	525700			7186	2089	5785	5794	8316	8316					0.028857429602794582
EIIATRGDI	9	Unmodified	_EIIATRGDI_					0	0	0			REV__tr|A0A7D6VZF4|A0A7D6VZF4_9CLOTUDP-N-acetylglucosamine1-carboxyvinyltransferaseOS=ClostridiumintestinaleOX=36845GN=murAPE=3SV=1	REV__tr|A0A7D6VZF4|A0A7D6VZF4_9CLOTUDP-N-acetylglucosamine1-carboxyvinyltransferaseOS=ClostridiumintestinaleOX=36845GN=murAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.76715087890625	2	494.277106	986.53966	0.17264	8.5333E-05	-2.1925	-0.0010837	-2.0199	-0.00099837	494.27567889512477	57.268	1.4192	53.923	53.679	55.098	-3.3449					61	27	3	0	0	0	0.027462	1	3815	3815		39.253	3.6345	1	240410	+		7187	31837	5786	5795	8317	8317					0.045851525806369864
EIIDECRAH	9	Unmodified	_EIIDECRAH_					0	0	0		ENSG00000168404|ENST00000308807|MLKL;ENST00000575695.5_1_16:74706404-74709236:-|nuORF;nc|ENSG00000168404|Q8NB16-2|MLKL	ENSG00000168404|ENST00000308807|MLKL	ENSG00000168404|ENST00000308807|MLKL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.3712768554688	2	543.255848	1084.49714	-1.4328	-0.00077836	0.20962	0.00011388	-1.2231	-0.00066448	543.2566225391838	41.029	0.36485	38.075	37.893	38.257	-2.9541					8	6	2	0	0	0	0.027392	1	1811	1811		63.306	15.649	1	11800			7188	6904	5787	5796	8318	8318					-0.041725658192717674
EIIEVVELDP	10	Unmodified	_EIIEVVELDP_					0	0	0		ENST00000489767.5_1_2:219130391-219134818:-|nuORF;ENSG00000127837|ENST00000248450|AAMP;ENST00000461911.1_1_2:219132163-219134845:-|nuORF;ENST00000475678.5_1_2:219131145-219134809:-|nuORF	ENST00000489767.5_1_2:219130391-219134818:-|nuORF	ENST00000489767.5_1_2:219130391-219134818:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.8357543945312	2	578.310812	1154.60707	2.4608	0.0014231	-0.089974	-5.2033E-05	2.3708	0.0013711	578.311020284668	97.192	0.77277	97.192	96.923	97.696	0					28	17	2	0	0	0	0.02661	1	10668	10668		32.812	0	1	371140			7189	3848	5788	5797	8319	8319					0.03595138000900988
EIIEVVELDP	10	Unmodified	_EIIEVVELDP_					0	0	0		ENST00000489767.5_1_2:219130391-219134818:-|nuORF;ENSG00000127837|ENST00000248450|AAMP;ENST00000461911.1_1_2:219132163-219134845:-|nuORF;ENST00000475678.5_1_2:219131145-219134809:-|nuORF	ENST00000489767.5_1_2:219130391-219134818:-|nuORF	ENST00000489767.5_1_2:219130391-219134818:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	578.310812	1154.60707	-1.0881	-0.00062927	0.70521	0.00040783	-0.38291	-0.00022144	578.309629474748	99.355	0.209	97.029	96.899	97.108	-2.3253	-0.081263	0.0007443	NaN	32.812	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5356.7			7190	3848	5788	5797							0.03595138000900988
EIIGQLDYYL	10	Unmodified	_EIIGQLDYYL_					0	0	0		ENSG00000103489|ENST00000261381|XYLT1	ENSG00000103489|ENST00000261381|XYLT1	ENSG00000103489|ENST00000261381|XYLT1	MULTI-MSMS	OvCa99_classI_Rep5	1	409.5507507324219	3	409.548295	1225.62306	3.0803	0.0012615	3.0445	0.0012469	6.1248	0.0025084	409.54942248250336	83.432	8.3397	83.432	82.437	90.777	0					407	201	4	0	0	0	0.5635	1	8634	8634		46.457	0.48454	1	7486300		+	7191	2320	5789	5798	8320	8320					0.019268442378233885
EIIGQLDYYL	10	Unmodified	_EIIGQLDYYL_					0	0	0		ENSG00000103489|ENST00000261381|XYLT1	ENSG00000103489|ENST00000261381|XYLT1	ENSG00000103489|ENST00000261381|XYLT1	MULTI-MSMS	OvCa99_classI_Rep5	1	613.8230590820312	2	613.818804	1225.62306	1.9793	0.001215	4.0584	0.0024911	6.0378	0.0037061	613.8211310976798	83.462	8.351	83.462	82.264	90.615	0					423	201	4	0	0	0	0.50873	1	8765	8765		25.574	0	1	13312000		+	7192	2320	5789	5798	8321	8321					0.019268442378233885
EIIKPILVL	9	Unmodified	_EIIKPILVL_					0	0	0		tr|A0A7D7A391|A0A7D7A391_9CLOTTransposaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20770PE=4SV=1	tr|A0A7D7A391|A0A7D7A391_9CLOTTransposaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20770PE=4SV=1	tr|A0A7D7A391|A0A7D7A391_9CLOTTransposaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20770PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.3468017578125	2	519.352086	1036.68962	0.77743	0.00040376	-1.331	-0.00069126	-0.55357	-0.0002875	519.3511731642703	129.92	0.89024	128.81	128.59	129.48	-1.1121					26	17	2	0	0	0	0.027459	1	10348	10348		62.107	17.991	1	31140			7193	36108	5790	5799	8322	8322					0.1727412459038078
EIIKPPLEQ	9	Unmodified	_EIIKPPLEQ_					0	0	0			REV__ENSG00000157578|ENST00000288350|LCA5L	REV__ENSG00000157578|ENST00000288350|LCA5L	MULTI-MSMS	OvCa99_classI_Rep5	1	533.8093872070312	2	533.810782	1065.60701	0.021936	1.1709E-05	-3.3778	-0.0018031	-3.3559	-0.0017914	533.8090148064657	30.955	2.065	30.955	30.731	32.796	0					81	41	5	0	0	0	0.14998	1	1223	1223		84.916	2.675	1	8246500	+		7194	20523	5791	5800	8323	8323					0.07683182791561194
EIIKTLFKE	9	Unmodified	_EIIKTLFKE_					0	0	0		ENST00000424919.1_1_X:150162237-150162561:+|nuORF	ENST00000424919.1_1_X:150162237-150162561:+|nuORF	ENST00000424919.1_1_X:150162237-150162561:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	560.8358764648438	2	560.834257	1119.65396	0.11493	6.4454E-05	1.0789	0.00060508	1.1938	0.00066954	560.8347490707145	59.012	0.71999	59.012	58.774	59.494	0					46	18	4	0	0	0	0.12515	1	5045	5045		90.37	5.4543	1	4267100			7195	11715	5792	5801	8324	8324					0.09892042342698915
EIIKYLAII	9	Unmodified	_EIIKYLAII_					0	0	0			REV__tr|A0A553SQM8|A0A553SQM8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07960PE=4SV=1	REV__tr|A0A553SQM8|A0A553SQM8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07960PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.7507934570312	2	538.341718	1074.66888	2.5312	0.0013626	-0.067152	-3.6151E-05	2.464	0.0013265	538.3414933844135	121.21	0.51219	121.21	121.1	121.61	0					16	11	2	0	0	0	0.027462	1	13984	13984		13.454	0	1	60603	+		7196	30647	5793	5802	8325	8325					0.13453534210680118
EIILGLEHM	9	Unmodified	_EIILGLEHM_					0	0	0		ENSG00000173020|ENST00000308595|GRK2;ENSG00000100077|ENST00000324198|GRK3;ENST00000526572.5_1_11:67049183-67049837:+|nuORF;ENST00000532099.5_1_11:67048984-67051337:+|nuORF;ENST00000416281.6_1_11:67048455-67049666:+|nuORF	ENSG00000173020|ENST00000308595|GRK2	ENSG00000173020|ENST00000308595|GRK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3648681640625	2	527.78371	1053.55287	0.55306	0.0002919	4.3285	0.0022845	4.8816	0.0025764	527.7861482477047	159.38	0.67293	159.38	158.99	159.66	0					18	9	3	0	0	0	0.027441	1	18670	18670		55.504	10.973	1	132860			7197	7343	5794	5803	8326	8326					0.028232673683760368
EIILPPGHIG	10	Unmodified	_EIILPPGHIG_					0	0	0			REV__LY75|p.S1527*|1|0.06|ENSG00000054219|chr2:159810645-159810645|G/-|frameshift_variant	REV__LY75|p.S1527*|1|0.06|ENSG00000054219|chr2:159810645-159810645|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3029174804688	2	523.305667	1044.59678	-2.1227	-0.0011108	-1.8084	-0.00094634	-3.9311	-0.0020572	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.76627	1	11484	11484		23.042	1.0826	1	183010	+		7198	16698	5795	5804	8327	8327					0.0762661985700106
EIILQLKSE	9	Unmodified	_EIILQLKSE_					0	0	0		nc|ENSG00000067798|Q8IVL0-3|NAV3;nc|ENSG00000067798|Q8IVL0-2|NAV3;ENSG00000067798|ENST00000397909|NAV3	nc|ENSG00000067798|Q8IVL0-3|NAV3	nc|ENSG00000067798|Q8IVL0-3|NAV3	MULTI-SECPEP	OvCa9_classI_Rep3	3	537.8047485351562	2	536.816064	1071.61758	0.9766	0.00052426	1.1609	0.00062319	2.1375	0.0011474	536.8177439671233	73.543	1.5855	71.055	70.628	72.214	-2.4873					40	28	4	0	0	0	0.027446	1	3656	3656		60.118	7.1816	1	56714			7199	1380	5796	5805	8328	8328					0.08463165446005405
EIINIFSSI	9	Unmodified	_EIINIFSSI_					0	0	0			REV__tr|A0A7D6ZEX7|A0A7D6ZEX7_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12690PE=4SV=1	REV__tr|A0A7D6ZEX7|A0A7D6ZEX7_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12690PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	518.2882080078125	2	518.289682	1034.56481	-0.93341	-0.00048378	-1.9091	-0.00098947	-2.8425	-0.0014733	518.2885607707362	53.253	1.1387	50.439	49.936	51.075	-2.8139					57	22	3	0	0	0	0.38969	2	3588	3588;3594		52.937	4.9772	1	146170	+		7200	31953	5797	5806	8329;8330	8329					0.04891207383184337
EIINIFSSI	9	Unmodified	_EIINIFSSI_					0	0	0			REV__tr|A0A7D6ZEX7|A0A7D6ZEX7_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12690PE=4SV=1	REV__tr|A0A7D6ZEX7|A0A7D6ZEX7_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12690PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	518.289682	1034.56481	-1.1781	-0.00061062	-1.3024	-0.00067501	-2.4805	-0.0012856	518.2889100758878	53.587	0.97174	50.379	50.149	51.12	-3.208	-0.030058	0.0002855	NaN	52.937	51	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	477110	+		7201	31953	5797	5806							0.04891207383184337
EIIQQYRN	8	Unmodified	_EIIQQYRN_					0	0	0		tr|A0A7D6VVT8|A0A7D6VVT8_9CLOTDUF4116domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06385PE=4SV=1	tr|A0A7D6VVT8|A0A7D6VVT8_9CLOTDUF4116domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06385PE=4SV=1	tr|A0A7D6VVT8|A0A7D6VVT8_9CLOTDUF4116domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06385PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	532.2813720703125	2	532.28018	1062.54581	0.75727	0.00040308	-2.1704	-0.0011553	-1.4131	-0.00075218	532.7798230073972	152.01	1.3246	152.01	151.2	152.52	0					48	27	3	0	0	0	0.67745	1	17818	17818		47.916	7.1374	1	71116			7202	35235	5798	5807	8331	8331					0.01703670812139535
EIIREEFHSL	10	Unmodified	_EIIREEFHSL_					0	0	0		tr|A0A7D7A5S7|A0A7D7A5S7_9CLOTTerBfamilytelluriteresistanceproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07305PE=4SV=1	tr|A0A7D7A5S7|A0A7D7A5S7_9CLOTTerBfamilytelluriteresistanceproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07305PE=4SV=1	tr|A0A7D7A5S7|A0A7D7A5S7_9CLOTTerBfamilytelluriteresistanceproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07305PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	424.890380859375	3	424.890944	1271.651	-0.11144	-4.7351E-05	-2.4509	-0.0010414	-2.5623	-0.0010887	424.89005057309436	20.59	2.4808	19.252	18.851	21.331	-1.3386					183	49	7	0	0	0	0.43433	1	68	68		63.534	4.9042	1	5179600			7203	36176	5799	5808	8332	8332					0.026041672179189845
EIIRINTISI	10	Unmodified	_EIIRINTISI_					0	0	0			REV__tr|A0A553SL78|A0A553SL78_NIACIPrephenatedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_20090PE=3SV=1	REV__tr|A0A553SL78|A0A553SL78_NIACIPrephenatedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_20090PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	587.294677734375	2	586.355888	1170.69722	-1.9844	-0.0011636	1.8528	0.0010864	-0.13162	-7.7178E-05	586.3568029112323	117.86	0.84215	116.82	116.59	117.43	-1.0324					30	16	3	0	0	0	0.027028	1	8938	8938		18.262	0	1	33925	+		7204	30196	5800	5809	8333	8333					0.1187023212000895
EIIRPVAN	8	Unmodified	_EIIRPVAN_					0	0	0		nc|ENSG00000080644|P32297-3|CHRNA3;nc|ENSG00000080644|P32297-1|CHRNA3;ENSG00000080644|ENST00000326828|CHRNA3	nc|ENSG00000080644|P32297-3|CHRNA3	nc|ENSG00000080644|P32297-3|CHRNA3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.7802429199219	2	456.269084	910.523616	-0.41183	-0.00018791	0.61732	0.00028166	0.20549	9.3758E-05	456.268929788453	80.039	0.83147	77.287	76.986	77.817	-2.7514					29	16	3	0	0	0	0.028476	1	6577	6577		12.207	0	1	39229			7205	14900	5801	5810	8334	8334					0.06477491134364755
EIISDITPK	9	Unmodified	_EIISDITPK_					0	0	0			REV__ENSG00000165868|ENST00000369209|HSPA12A	REV__ENSG00000165868|ENST00000369209|HSPA12A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.2421875	2	508.28714	1014.55973	-0.22085	-0.00011226	-3.8447	-0.0019542	-4.0656	-0.0020665	508.78503477161945	61.721	0.71293	58.264	58.151	58.864	-3.4577					23	14	2	0	0	0	0.027411	1	4246	4246		64.207	0	1	29011	+		7206	21130	5802	5811	8335	8335					0.053029035205554464
EIISHRMTDN	10	Unmodified	_EIISHRMTDN_					0	0	0			REV__ENSG00000173214|ENST00000671876|MFSD4B	REV__ENSG00000173214|ENST00000671876|MFSD4B	MULTI-MSMS	OvCa9_classI_Rep3	3	405.8665466308594	3	405.8644	1214.57137	3.0032	0.0012189	3.3306	0.0013518	6.3337	0.0025706	405.8656502294352	58.999	2.532	55.873	55.114	57.646	-3.1264					157	70	3	0	0	0	0.78463	1	1856	1856		14.694	0	1	158560	+		7207	21756	5803	5812	8336	8336					-0.027332227277156562
EIITDIKLAI	10	Unmodified	_EIITDIKLAI_					0	0	0		tr|A0A553SMU4|A0A553SMU4_NIACIFAD-bindingPCMH-typedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23080PE=4SV=1	tr|A0A553SMU4|A0A553SMU4_NIACIFAD-bindingPCMH-typedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23080PE=4SV=1	tr|A0A553SMU4|A0A553SMU4_NIACIFAD-bindingPCMH-typedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23080PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.7706909179688	2	564.847364	1127.68018	2.1271	0.0012015	0.62745	0.00035441	2.7545	0.0015559	564.8474438138142	93.142	0.75229	93.142	92.594	93.346	0					30	17	3	0	0	0	0.02711	1	10051	10051		82.75	7.7072	1	841100			7208	33873	5804	5813	8337	8337					0.12144311514180117
EIITDVDKP	9	Unmodified	_EIITDVDKP_					0	0	0			REV__tr|A0A7D6ZF65|A0A7D6ZF65_9CLOTGerminationproteaseOS=ClostridiumintestinaleOX=36845GN=gprPE=3SV=1	REV__tr|A0A7D6ZF65|A0A7D6ZF65_9CLOTGerminationproteaseOS=ClostridiumintestinaleOX=36845GN=gprPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.298828125	2	515.276772	1028.53899	-0.64316	-0.00033141	4.1859	0.0021569	3.5428	0.0018255	515.7803781698026	51.733	0.24406	51.733	51.544	51.788	0					11	5	3	0	0	0	0.027462	1	3988	3988		25.45	4.5032	1	208750	+		7209	31959	5805	5814	8338	8338					0.02586313140909624
EIITKKLNL	9	Unmodified	_EIITKKLNL_					0	0	0		tr|A0A7D7A0N4|A0A7D7A0N4_9CLOTDNApolymeraseIIIPolC-typeOS=ClostridiumintestinaleOX=36845GN=polCPE=3SV=1	tr|A0A7D7A0N4|A0A7D7A0N4_9CLOTDNApolymeraseIIIPolC-typeOS=ClostridiumintestinaleOX=36845GN=polCPE=3SV=1	tr|A0A7D7A0N4|A0A7D7A0N4_9CLOTDNApolymeraseIIIPolC-typeOS=ClostridiumintestinaleOX=36845GN=polCPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.828369140625	2	536.342249	1070.66995	-0.96013	-0.00051496	-0.28299	-0.00015178	-1.2431	-0.00066674	536.3418228180614	65.884	0.53844	65.884	65.79	66.328	0					16	13	2	0	0	0	0.02744	1	6125	6125		44.377	1.5129	1	1297900			7210	36001	5806	5815	8339	8339					0.1374374857962266
EIITPETED	9	Unmodified	_EIITPETED_					0	0	0			REV__nc|ENSG00000164654|Q9NXC5-2|MIOS	REV__nc|ENSG00000164654|Q9NXC5-2|MIOS	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.2822265625	2	523.748044	1045.48154	-0.50757	-0.00026584	-2.0902	-0.0010947	-2.5977	-0.0013606	523.7462788781933	73.49	0.3215	73.49	73.276	73.597	0					10	7	2	0	0	0	0.027441	1	7186	7186		45.952	10.334	1	218640	+		7211	21009	5807	5816	8340	8340					-0.03938573855316463
EIIVIDKVK	9	Unmodified	_EIIVIDKVK_					0	0	0			REV__tr|A0A553SIU5|A0A553SIU5_NIACIGlycosyltransferasefamily2proteinOS=NialliacirculansOX=1397GN=CEQ21_15495PE=3SV=1	REV__tr|A0A553SIU5|A0A553SIU5_NIACIGlycosyltransferasefamily2proteinOS=NialliacirculansOX=1397GN=CEQ21_15495PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8110961914062	2	528.8368	1055.65905	0.69667	0.00036843	0.91157	0.00048207	1.6082	0.0008505	528.8370923796836	105.64	0.69944	105.64	105.44	106.14	0					24	15	2	0	0	0	0.027447	1	11892	11892		47.657	5.2612	1	704760	+		7212	29930	5808	5817	8341	8341					0.13344346205326474
EIIVKNKDEE	10	Unmodified	_EIIVKNKDEE_					0	0	0		nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4;ENSG00000115310|ENST00000337526|RTN4;RTN4-KIAA0196|2|fusion	nc|ENSG00000115310|Q9NQC3-4|RTN4;RTN4-KIAA0196|2|fusion	nc|ENSG00000115310|Q9NQC3-4|RTN4	MULTI-SECPEP	OvCa99_classI_Rep5	1	609.8113403320312	2	608.824618	1215.63468	1.9989	0.001217	-2.2876	-0.0013927	-0.28865	-0.00017574	608.8236105385428	117.09	0.65026	117.09	116.91	117.56	0					20	13	2	0	0	0	0.026826	1	13460	13460		44.377	19.858	1	50677			7213	3085;32793	5809	5818	8342	8342					0.03549041261135244
EIIVRSPIF	9	Unmodified	_EIIVRSPIF_					0	0	0			REV__tr|A0A7D6ZZ69|A0A7D6ZZ69_9CLOTSporephotoproductlyaseOS=ClostridiumintestinaleOX=36845GN=splBPE=4SV=1	REV__tr|A0A7D6ZZ69|A0A7D6ZZ69_9CLOTSporephotoproductlyaseOS=ClostridiumintestinaleOX=36845GN=splBPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.3202514648438	2	537.321317	1072.62808	-0.2624	-0.00014099	-0.43441	-0.00023342	-0.69681	-0.00037441	537.3209389302358	109.82	1.9981	108.22	107.65	109.65	-1.6011					67	37	3	0	0	0	0.19758	1	10092	10092		76.774	2.5191	1	171920	+		7214	32399	5810	5819	8343	8343					0.09467192891065679
EIIVRSPIF	9	Unmodified	_EIIVRSPIF_					0	0	0			REV__tr|A0A7D6ZZ69|A0A7D6ZZ69_9CLOTSporephotoproductlyaseOS=ClostridiumintestinaleOX=36845GN=splBPE=4SV=1	REV__tr|A0A7D6ZZ69|A0A7D6ZZ69_9CLOTSporephotoproductlyaseOS=ClostridiumintestinaleOX=36845GN=splBPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	537.321317	1072.62808	-0.6725	-0.00036135	-0.84763	-0.00045545	-1.5201	-0.0008168	537.3209235208499	108.24	1.3324	108.02	107.53	108.87	-0.22498	-0.10755	0.00031105	NaN	76.774	54	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118180	+		7215	32399	5810	5819							0.09467192891065679
EIIVRSPIF	9	Unmodified	_EIIVRSPIF_					0	0	0			REV__tr|A0A7D6ZZ69|A0A7D6ZZ69_9CLOTSporephotoproductlyaseOS=ClostridiumintestinaleOX=36845GN=splBPE=4SV=1	REV__tr|A0A7D6ZZ69|A0A7D6ZZ69_9CLOTSporephotoproductlyaseOS=ClostridiumintestinaleOX=36845GN=splBPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	537.321317	1072.62808	0.99251	0.00053329	-2.2126	-0.0011889	-1.2201	-0.0006556	537.3198847394991	109.28	1.5685	108.14	107.52	109.08	-1.1444	0.0098722	-0.0011558	NaN	76.774	51	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160660	+		7216	32399	5810	5819							0.09467192891065679
EIIVRSPIF	9	Unmodified	_EIIVRSPIF_					0	0	0			REV__tr|A0A7D6ZZ69|A0A7D6ZZ69_9CLOTSporephotoproductlyaseOS=ClostridiumintestinaleOX=36845GN=splBPE=4SV=1	REV__tr|A0A7D6ZZ69|A0A7D6ZZ69_9CLOTSporephotoproductlyaseOS=ClostridiumintestinaleOX=36845GN=splBPE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	537.321317	1072.62808	-0.2624	-0.00014099	-0.43441	-0.00023342	-0.69681	-0.00037441	537.3209389302358	109.82	1.9981	108.22	107.65	109.65	-1.6011	0.097683	0.00075512	NaN	76.774	67	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171920	+		7217	32399	5810	5819							0.09467192891065679
EIIYKESNN	9	Unmodified	_EIIYKESNN_					0	0	0		tr|A0A7D6VQX9|A0A7D6VQX9_9CLOTCobalttransporterCbiMOS=ClostridiumintestinaleOX=36845GN=cbiMPE=4SV=1	tr|A0A7D6VQX9|A0A7D6VQX9_9CLOTCobalttransporterCbiMOS=ClostridiumintestinaleOX=36845GN=cbiMPE=4SV=1	tr|A0A7D6VQX9|A0A7D6VQX9_9CLOTCobalttransporterCbiMOS=ClostridiumintestinaleOX=36845GN=cbiMPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.8145751953125	2	555.277303	1108.54005	1.032	0.00057305	0.062334	3.4613E-05	1.0943	0.00060766	555.277201469729	157.76	0.64975	157.76	157.5	158.15	0					21	12	3	0	0	0	0.027462	1	18514	18514		13.454	0	1	87132			7218	34877	5811	5820	8344	8344					-0.009874724901692389
EIIYSDLC	8	Unmodified	_EIIYSDLC_					0	0	0			REV__ENSG00000176281|ENST00000315915|OR4K5	REV__ENSG00000176281|ENST00000315915|OR4K5	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.24005126953125	2	478.225694	954.436834	0.07578	3.624E-05	1.8693	0.00089394	1.9451	0.00093018	478.22637438400733	58.412	0.33261	58.412	58.322	58.655	0					12	7	2	0	0	0	0.028476	1	4997	4997		18.324	0	1	139940	+		7219	21944	5812	5821	8345	8345					-0.04220676202362483
EIKDAIKKN	9	Unmodified	_EIKDAIKKN_					0	0	0		tr|A0A7D6VQJ5|A0A7D6VQJ5_9CLOTDNA-directedRNApolymerasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=rpoBPE=3SV=1	tr|A0A7D6VQJ5|A0A7D6VQJ5_9CLOTDNA-directedRNApolymerasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=rpoBPE=3SV=1	tr|A0A7D6VQJ5|A0A7D6VQJ5_9CLOTDNA-directedRNApolymerasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=rpoBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.8319091796875	2	529.813856	1057.61316	-1.0811	-0.00057277	0.50381	0.00026693	-0.57727	-0.00030584	529.8141006269458	83.394	1.6921	81.129	80.71	82.402	-2.2659					68	35	3	0	0	0	0.027455	1	4820	4820		34.173	0	1	345070			7220	34853	5813	5822	8346	8346					0.08665701023096517
EIKDNGKGID	10	Unmodified	_EIKDNGKGID_					0	0	0		tr|A0A7D6VQY7|A0A7D6VQY7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03355PE=4SV=1	tr|A0A7D6VQY7|A0A7D6VQY7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03355PE=4SV=1	tr|A0A7D6VQY7|A0A7D6VQY7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03355PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2621459960938	2	544.782753	1087.55095	1.7332	0.00094422	-0.72801	-0.00039661	1.0052	0.00054761	544.7825156130662	77.797	0.50565	77.797	77.588	78.093	0					16	11	2	0	0	0	0.026551	1	7841	7841		51.193	5.2204	1	462590			7221	34879	5814	5823	8347	8347					0.010679298841068885
EIKEQLTEH	9	Unmodified	_EIKEQLTEH_					0	0	0		ENSG00000120370|ENST00000367763|GORAB	ENSG00000120370|ENST00000367763|GORAB	ENSG00000120370|ENST00000367763|GORAB	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.7738037109375	2	563.790578	1125.5666	0.11927	6.7242E-05	1.0776	0.00060752	1.1968	0.00067476	563.7917683369586	67.662	0.23683	67.662	67.566	67.803	0					6	4	2	0	0	0	0.027462	1	6340	6340		40.778	0	1	203780			7222	3429	5815	5824	8348	8348					0.008842164011639397
EIKEQLTEH	9	Unmodified	_EIKEQLTEH_					0	0	0		ENSG00000120370|ENST00000367763|GORAB	ENSG00000120370|ENST00000367763|GORAB	ENSG00000120370|ENST00000367763|GORAB	MULTI-MATCH	OvCa9_classI_Rep2	2		2	563.790578	1125.5666	0.26639	0.00015019	6.155	0.0034701	6.4214	0.0036203	563.7937483138406	70.276	0.75258	67.706	67.361	68.114	-2.5707	-0.033218	0.00050591	NaN	101.6	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47124			7223	3429	5815	5824							0.008842164011639397
EIKEQLTEH	9	Unmodified	_EIKEQLTEH_					0	0	0		ENSG00000120370|ENST00000367763|GORAB	ENSG00000120370|ENST00000367763|GORAB	ENSG00000120370|ENST00000367763|GORAB	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	563.790578	1125.5666	0.40274	0.00022706	6.9764	0.0039332	7.3791	0.0041603	564.2965895035738	71.306	0.73446	67.85	67.677	68.412	-3.4563	0.1107	0.0014321	NaN	101.6	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93764			7224	3429	5815	5824							0.008842164011639397
EIKFKRLV	8	Unmodified	_EIKFKRLV_					0	0	0		tr|A0A553SSU2|A0A553SSU2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03675PE=4SV=1	tr|A0A553SSU2|A0A553SSU2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03675PE=4SV=1	tr|A0A553SSU2|A0A553SSU2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03675PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.2809448242188	2	516.831852	1031.64915	-0.34208	-0.0001768	0.12212	6.3115E-05	-0.21996	-0.00011368	516.8317418291023	69.206	0.4557	69.206	68.977	69.433	0					26	10	4	0	0	0	0.028476	1	6572	6572		16.473	0	1	984130			7225	34419	5816	5825	8349	8349					0.1345920299061163
EIKFQSGDFI	10	Unmodified	_EIKFQSGDFI_					0	0	0		tr|A0A7D7A1P6|A0A7D7A1P6_9CLOTPutativetRNA(cytidine(34)-2'-O)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05125PE=3SV=1	tr|A0A7D7A1P6|A0A7D7A1P6_9CLOTPutativetRNA(cytidine(34)-2'-O)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05125PE=3SV=1	tr|A0A7D7A1P6|A0A7D7A1P6_9CLOTPutativetRNA(cytidine(34)-2'-O)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05125PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	592.30078125	2	592.303321	1182.59209	-0.076132	-4.5093E-05	-3.8174	-0.002261	-3.8935	-0.0023061	592.3012086760319	80.961	1.31	79.312	78.765	80.075	-1.6485					94	25	6	0	0	0	0.48398	1	6855	6855		56.434	1.6575	1	1420500			7226	36045	5817	5826	8350	8350					0.008096909235973726
EIKFREDD	8	Unmodified	_EIKFREDD_					0	0	0			REV__ENSG00000036448|ENST00000262113|MYOM2	REV__ENSG00000036448|ENST00000262113|MYOM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2681274414062	2	526.256371	1050.49819	2.3917	0.0012586	-1.8297	-0.00096288	0.56199	0.00029575	526.2552196666622	94.157	1.0255	94.157	93.923	94.949	0					49	23	3	0	0	0	0.028476	1	10342	10342		30.504	0	1	3050100	+		7227	16605	5818	5827	8351	8351					-0.025040281787141794
EIKGLKQH	8	Unmodified	_EIKGLKQH_					0	0	0		tr|A0A553SFM5|A0A553SFM5_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09055PE=3SV=1	tr|A0A553SFM5|A0A553SFM5_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09055PE=3SV=1	tr|A0A553SFM5|A0A553SFM5_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09055PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.2618408203125	2	476.782359	951.550165	-0.28783	-0.00013723	0.42049	0.00020048	0.13267	6.3253E-05	476.7822821409846	29.511	0.24968	29.511	29.387	29.636	0					10	4	3	0	0	0	0.028476	1	1073	1073		18.324	0	1	42031			7228	33052	5819	5828	8352	8352					0.07245180025711306
EIKHIQNEKDN	11	Unmodified	_EIKHIQNEKDN_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.2416076660156	3	456.568641	1366.68409	-0.30218	-0.00013796	-0.24151	-0.00011027	-0.54369	-0.00024823	456.5682154806424	59.028	0.22723	59.028	58.892	59.12	0					10	5	2	0	0	0	0.025819	1	5058	5058		32.034	20.102	1	317640			7229	1212	5820	5829	8353	8353					0.015417492699498325
EIKIILLSK	9	Unmodified	_EIKIILLSK_					0	0	0		ENST00000395360.6_1_12:48138126-48138687:-|nuORF	ENST00000395360.6_1_12:48138126-48138687:-|nuORF	ENST00000395360.6_1_12:48138126-48138687:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.2892456054688	2	528.854993	1055.69543	2.358	0.001247	-0.21971	-0.00011619	2.1383	0.0011308	528.8546378536204	80.345	0.67902	80.345	80.148	80.827	0					30	15	3	0	0	0	0.027462	1	8303	8303		9.7057	0.88332	1	474460			7230	11287	5821	5830	8354	8354					0.16981223102038712
EIKKAYRKRAL	11	Unmodified	_EIKKAYRKRAL_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-SECPEP	OvCa99_classI_Rep5	1	459.23822021484375	3	459.289261	1374.84595	-0.85738	-0.00039378	-0.038032	-1.7468E-05	-0.89541	-0.00041125	459.28902746985625	28.115	0.34943	28.115	27.791	28.14	0					10	6	2	0	0	0	0.02642	1	865	865		6.3209	0	1	26293			7231	6883	5822	5831	8355	8355					0.17352382813555778
EIKKLAKNY	9	Unmodified	_EIKKLAKNY_					0	0	0		tr|A0A7D6ZGI3|A0A7D6ZGI3_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22430PE=3SV=1	tr|A0A7D6ZGI3|A0A7D6ZGI3_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22430PE=3SV=1	tr|A0A7D6ZGI3|A0A7D6ZGI3_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22430PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8291625976562	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.59259	1	11853	11853		32.812	3.6629	1	308210			7232	35545	5823	5832	8356	8356					0.10094577919812764
EIKKLRELE	9	Unmodified	_EIKKLRELE_					0	0	0		ENSG00000180979|ENST00000397130|LRRC57;ENST00000569830.1_1_15:42836283-42839734:-|nuORF	ENSG00000180979|ENST00000397130|LRRC57	ENSG00000180979|ENST00000397130|LRRC57	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.302734375	2	579.348063	1156.68157	-0.92556	-0.00053622	0.29182	0.00016907	-0.63374	-0.00036716	579.3482872799357	53.283	0.51985	53.283	52.999	53.519	0					16	11	2	0	0	0	0.027062	1	4258	4258		110.12	16.924	1	398590			7233	7906	5824	5833	8357	8357					0.10949945602965272
EIKKTVVL	8	Unmodified	_EIKKTVVL_					0	0	0		nc|ENSG00000214558|P0DQW0|ZC3H11C;ENSG00000215817|ENST00000651890|ZC3H11B;ENSG00000058673|ENST00000367210|ZC3H11A	nc|ENSG00000214558|P0DQW0|ZC3H11C	nc|ENSG00000214558|P0DQW0|ZC3H11C	MULTI-SECPEP	OvCa99_classI_Rep5	1	466.26519775390625	2	465.305136	928.595718	0.24367	0.00011338	1.7966	0.00083595	2.0402	0.00094933	465.30583667766535	67.396	0.86078	67.396	67.055	67.916	0					38	21	3	0	0	0	0.028476	1	6288	6288		23.042	0	1	912520			7234	1247	5825	5834	8358	8358					0.1285640548809397
EIKKVHDI	8	Unmodified	_EIKKVHDI_					0	0	0		tr|A0A7D6ZYP2|A0A7D6ZYP2_9CLOTN5-carboxyaminoimidazoleribonucleotidesynthaseOS=ClostridiumintestinaleOX=36845GN=purKPE=3SV=1	tr|A0A7D6ZYP2|A0A7D6ZYP2_9CLOTN5-carboxyaminoimidazoleribonucleotidesynthaseOS=ClostridiumintestinaleOX=36845GN=purKPE=3SV=1	tr|A0A7D6ZYP2|A0A7D6ZYP2_9CLOTN5-carboxyaminoimidazoleribonucleotidesynthaseOS=ClostridiumintestinaleOX=36845GN=purKPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.9234313964844	2	491.290017	980.565481	-0.74336	-0.0003652	-0.61695	-0.0003031	-1.3603	-0.0006683	491.2893380506211	61.476	1.3099	61.476	60.943	62.253	0					47	30	3	0	0	0	0.028476	1	5470	5470		31.955	15.482	1	1876200			7235	35924	5826	5835	8359	8359					0.07442046822893644
EIKNCRILE	9	Unmodified	_EIKNCRILE_					0	0	0			REV__tr|A0A7D6VVK9|A0A7D6VVK9_9CLOTGlutathionebiosynthesisbifunctionalproteinGshABOS=ClostridiumintestinaleOX=36845GN=gshABPE=3SV=1	REV__tr|A0A7D6VVK9|A0A7D6VVK9_9CLOTGlutathionebiosynthesisbifunctionalproteinGshABOS=ClostridiumintestinaleOX=36845GN=gshABPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.289306640625	2	559.305341	1116.59613	1.6077	0.00089917	1.6557	0.00092604	3.2634	0.0018252	559.3055185453927	83.319	0.55253	83.319	82.992	83.545	0					31	12	3	0	0	0	0.027425	1	8684	8684		60.118	0	1	540590	+		7236	31722	5827	5836	8360	8360					0.04249457145647284
EIKNYFFGE	9	Unmodified	_EIKNYFFGE_					0	0	0		tr|A0A7D6ZX10|A0A7D6ZX10_9CLOTDUF512domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09995PE=4SV=1	tr|A0A7D6ZX10|A0A7D6ZX10_9CLOTDUF512domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09995PE=4SV=1	tr|A0A7D6ZX10|A0A7D6ZX10_9CLOTDUF512domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09995PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.3567504882812	2	573.776939	1145.53933	-0.10233	-5.8715E-05	2.8329	0.0016255	2.7306	0.0015667	573.7784106072024	32.378	0.59043	32.378	32.254	32.844	0					23	11	3	0	0	0	0.027217	1	1427	1427		104.75	14.146	1	100190			7237	35862	5828	5837	8361	8361					-0.027622671392464326
EIKRLTLK	8	Unmodified	_EIKRLTLK_					0	0	0		tr|A0A7D6ZHB7|A0A7D6ZHB7_9CLOTGlutamateracemaseOS=ClostridiumintestinaleOX=36845GN=murIPE=3SV=1	tr|A0A7D6ZHB7|A0A7D6ZHB7_9CLOTGlutamateracemaseOS=ClostridiumintestinaleOX=36845GN=murIPE=3SV=1	tr|A0A7D6ZHB7|A0A7D6ZHB7_9CLOTGlutamateracemaseOS=ClostridiumintestinaleOX=36845GN=murIPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	500.8286437988281	2	500.829309	999.644065	-0.61458	-0.0003078	0.10073	5.0448E-05	-0.51385	-0.00025735	500.8293183218035	74.084	1.9767	71.596	71.324	73.301	-2.4873					112	39	4	0	0	0	0.38688	1	3674	3674		90.601	0	1	1488900			7238	35570	5829	5838	8362	8362					0.1442289912799879
EIKTFPSITL	10	Unmodified	_EIKTFPSITL_					0	0	0		tr|A0A553SSE4|A0A553SSE4_NIACICytochromeP450OS=NialliacirculansOX=1397GN=CEQ21_02955PE=3SV=1	tr|A0A553SSE4|A0A553SSE4_NIACICytochromeP450OS=NialliacirculansOX=1397GN=CEQ21_02955PE=3SV=1	tr|A0A553SSE4|A0A553SSE4_NIACICytochromeP450OS=NialliacirculansOX=1397GN=CEQ21_02955PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	575.2978515625	2	574.831714	1147.64888	-0.56777	-0.00032637	-3.8569	-0.0022171	-4.4247	-0.0025435	574.8294077055783	96.8	1.2307	95.842	95.381	96.612	-0.95856					44	21	4	0	0	0	0.026681	1	8836	8836		52.937	20.124	1	55176			7239	34365	5830	5839	8363	8363					0.0809573848009677
EIKTLYFSL	9	Unmodified	_EIKTLYFSL_					0	0	0		L1MC5_dup3481|chr4:19631159-19632103:+|1.0071503765471246|0.0011382453961836|9.79|425.0|5|1|sense	L1MC5_dup3481|chr4:19631159-19632103:+|1.0071503765471246|0.0011382453961836|9.79|425.0|5|1|sense	L1MC5_dup3481|chr4:19631159-19632103:+|1.0071503765471246|0.0011382453961836|9.79|425.0|5|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.8536987304688	2	557.313158	1112.61176	0.51931	0.00028942	1.4769	0.00082312	1.9963	0.0011125	557.3139251618499	114.45	0.96333	114.45	114.01	114.98	0					34	20	3	0	0	0	0.027462	1	13078	13078		32.812	3.6629	1	165110			7240	14605	5831	5840	8364	8364					0.05996066934335431
EIKTMMEHL	9	Unmodified	_EIKTMMEHL_					0	0	0		tr|A0A553SM51|A0A553SM51_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21830PE=4SV=1	tr|A0A553SM51|A0A553SM51_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21830PE=4SV=1	tr|A0A553SM51|A0A553SM51_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21830PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	566.280029296875	2	566.280477	1130.5464	0.33471	0.00018954	1.2422	0.00070345	1.5769	0.00089299	566.2810570263237	58.297	0.70451	58.297	58.069	58.774	0					25	16	3	0	0	0	0.36502	1	4946	4946		55.504	7.5886	1	396500			7241	33803	5832	5841	8365	8365					-0.013649938546677731
EIKVERVFKL	10	Unmodified	_EIKVERVFKL_					0	0	0		tr|A0A7D6VRZ6|A0A7D6VRZ6_9CLOTDNAhelicaseRecQOS=ClostridiumintestinaleOX=36845GN=recQPE=3SV=1	tr|A0A7D6VRZ6|A0A7D6VRZ6_9CLOTDNAhelicaseRecQOS=ClostridiumintestinaleOX=36845GN=recQPE=3SV=1	tr|A0A7D6VRZ6|A0A7D6VRZ6_9CLOTDNAhelicaseRecQOS=ClostridiumintestinaleOX=36845GN=recQPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	420.9273681640625	3	420.927329	1259.76016	-0.40847	-0.00017194	0.29792	0.0001254	-0.11055	-4.6533E-05	420.92744774972056	69.031	2.0508	66.41	66.118	68.168	-2.6203					127	40	5	0	0	0	0.55713	1	5502	5502		47.228	2.2055	1	1205300			7242	34969	5833	5842	8366	8366					0.1406679790804901
EIKVQRATG	9	Unmodified	_EIKVQRATG_					0	0	0			REV__ENSG00000122483|ENST00000690025|CCDC18	REV__ENSG00000122483|ENST00000690025|CCDC18	MULTI-MSMS	OvCa9_classI_Rep3	3	501.28973388671875	2	501.290548	1000.56654	-1.4695	-0.00073667	1.3149	0.00065914	-0.15466	-7.7529E-05	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.69666	1	11166	11166		19.104	0	1	97838	+		7243	18600	5834	5843	8367	8367					0.06628261191804086
EIKYILSII	9	Unmodified	_EIKYILSII_					0	0	0		ENSG00000225180|ENST00000637878|PVALEF	ENSG00000225180|ENST00000637878|PVALEF	ENSG00000225180|ENST00000637878|PVALEF	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.3390502929688	2	546.339175	1090.6638	-2.4634	-0.0013458	1.9617	0.0010718	-0.50167	-0.00027408	546.3400848127436	125.68	1.1765	124.27	123.99	125.17	-1.4143					54	23	3	0	0	0	0.31747	1	11938	11938		60.972	4.2509	1	120780			7244	9259	5835	5844	8368	8368					0.12209230348116762
EILAEETILS	10	Unmodified	_EILAEETILS_					0	0	0		ENSG00000145191|ENST00000648915|EIF2B5;ENST00000491144.5_1_3:183857994-183862728:+|nuORF;ENST00000492226.1_1_3:183861886-183862561:+|nuORF;ENST00000465218.2_1_3:183861194-183862728:+|nuORF	ENSG00000145191|ENST00000648915|EIF2B5	ENSG00000145191|ENST00000648915|EIF2B5	MULTI-MSMS	OvCa99_classI_Rep5	1	559.3045043945312	2	559.302987	1116.59142	0.97292	0.00054416	0.49204	0.0002752	1.465	0.00081935	559.3031881152808	72.393	0.75219	72.393	72.125	72.877	0					44	18	4	0	0	0	0.53885	1	7070	7070		49.442	0	1	5984800			7245	5206	5836	5845	8369	8369					0.037788514838894116
EILALAGHLR	10	Unmodified	_EILALAGHLR_					0	0	0			REV__ENSG00000165244|ENST00000375256|ZNF367	REV__ENSG00000165244|ENST00000375256|ZNF367	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.7968139648438	2	546.82984	1091.64513	2.1445	0.0011727	-0.072736	-3.9774E-05	2.0718	0.0011329	546.8296459906595	84.85	0.3321	84.85	84.672	85.004	0					11	7	2	0	0	0	0.026915	1	8887	8887		20.947	3.582	1	259390	+		7246	21073	5837	5846	8370	8370					0.10297113496881138
EILANGGSL	9	Unmodified	_EILANGGSL_					0	0	0		ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	MULTI-SECPEP	OvCa99_classI_Rep5	1	438.19873046875	2	437.23745	872.460347	1.1409	0.00049886	-0.87962	-0.0003846	0.26132	0.00011426	437.2369185981898	46.176	0.52261	46.176	45.979	46.501	0					27	11	3	0	0	0	0.027426	1	3270	3270		56.721	26.217	1	1010900			7247	1013	5838	5847	8371	8371					0.019015056264947816
EILASRTPE	9	Unmodified	_EILASRTPE_					0	0	0		nc|ENSG00000196975|P09525-2|ANXA4;nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4	nc|ENSG00000196975|P09525-2|ANXA4	nc|ENSG00000196975|P09525-2|ANXA4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.81646728515625	2	508.274564	1014.53457	-0.25436	-0.00012929	1.3218	0.00067182	1.0674	0.00054253	508.27712566560433	76.018	0.28699	73.079	72.888	73.175	-2.9389					9	5	2	0	0	0	0.027461	1	5995	5995		49.442	0	1	34159			7248	8667	5839	5848	8372	8372					0.02788848718000736
EILDEGHIL	9	Unmodified	_EILDEGHIL_					0	0	0		ENSG00000143341|ENST00000271588|HMCN1;nc|ENSG00000143341|Q96RW7-2|HMCN1;HMCN1|p.T3358Sfs*4|1|0.06|ENSG00000143341|chr1:186093545-186093546|-/GT|frameshift_variant	ENSG00000143341|ENST00000271588|HMCN1	ENSG00000143341|ENST00000271588|HMCN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.7791137695312	2	519.776939	1037.53933	0.18076	9.3955E-05	3.3855	0.0017597	3.5663	0.0018537	519.7785039583339	113.57	2.019	112.13	111.8	113.82	-1.4461					98	39	4	0	0	0	0.32337	1	10545	10545		60.294	0	1	390830			7249	5038	5840	5849	8373	8373					0.022057328607843374
EILDEKNLV	9	Unmodified	_EILDEKNLV_					0	0	0			REV__ENSG00000009413|ENST00000368802|REV3L	REV__ENSG00000009413|ENST00000368802|REV3L	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.7991333007812	2	536.797872	1071.58119	-0.78076	-0.00041911	0.59057	0.00031702	-0.19019	-0.00010209	536.7979899758632	78.581	1.4666	75.83	75.377	76.844	-2.7514					72	30	3	0	0	0	0.11471	1	6341	6341		93.195	5.4412	1	1102900	+		7250	16465	5841	5850	8374	8374					0.0482628854927043
EILDKKWN	8	Unmodified	_EILDKKWN_					0	0	0			REV__tr|A0A7D7A6C8|A0A7D7A6C8_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10035PE=4SV=1	REV__tr|A0A7D7A6C8|A0A7D7A6C8_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10035PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.756591796875	2	523.287474	1044.5604	2.0174	0.0010557	1.0165	0.00053192	3.0338	0.0015876	523.7897163099433	86.125	0.51756	86.125	85.954	86.471	0					27	12	3	0	0	0	0.028476	1	9114	9114		64.207	9.431	1	336710	+		7251	32657	5842	5851	8375	8375					0.039897429602888224
EILDVIEPT	9	Unmodified	_EILDVIEPT_					0	0	0		nc|ENSG00000066027|Q15172-2|PPP2R5A;ENSG00000066027|ENST00000261461|PPP2R5A	nc|ENSG00000066027|Q15172-2|PPP2R5A	nc|ENSG00000066027|Q15172-2|PPP2R5A	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7756958007812	2	514.779148	1027.54374	0.96898	0.00049881	0.47831	0.00024622	1.4473	0.00074504	514.7794475371996	155.49	0.61465	155.49	155.22	155.84	0					18	11	2	0	0	0	0.027462	1	18231	18231		45.952	8.7928	1	78395			7252	1340	5843	5852	8376	8376					0.031071972836798523
EILEIFDGIL	10	Unmodified	_EILEIFDGIL_					0	0	0		tr|A0A7D7A4S5|A0A7D7A4S5_9CLOTPASdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03060PE=4SV=1	tr|A0A7D7A4S5|A0A7D7A4S5_9CLOTPASdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03060PE=4SV=1	tr|A0A7D7A4S5|A0A7D7A4S5_9CLOTPASdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03060PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.7992553710938	2	581.323722	1160.63289	1.2295	0.00071473	-4.3111	-0.0025062	-3.0816	-0.0017914	581.3227517107085	92.265	0.25063	92.265	92.092	92.343	0					8	5	2	0	0	0	0.026802	1	9954	9954		26.693	0	1	92588			7253	36154	5844	5853	8377	8377					0.05900032243198439
EILENLTLI	9	Unmodified	_EILENLTLI_					0	0	0			REV__tr|A0A7D6VPF9|A0A7D6VPF9_9CLOTRepressorLexAOS=ClostridiumintestinaleOX=36845GN=lexAPE=3SV=1	REV__tr|A0A7D6VPF9|A0A7D6VPF9_9CLOTRepressorLexAOS=ClostridiumintestinaleOX=36845GN=lexAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.30615234375	2	529.310615	1056.60668	-0.56317	-0.00029809	-0.80374	-0.00042543	-1.3669	-0.00072352	529.3095544913454	59.636	1.3273	56.244	55.854	57.182	-3.392					42	26	2	0	0	0	0.027185	1	3975	3975		71.877	8.5712	1	353970	+		7254	31245	5845	5854	8378	8378					0.08063763071731955
EILFNRSLH	9	Unmodified	_EILFNRSLH_					0	0	0			REV__tr|A0A553ST45|A0A553ST45_NIACIHelicaseOS=NialliacirculansOX=1397GN=CEQ21_04180PE=4SV=1	REV__tr|A0A553ST45|A0A553ST45_NIACIHelicaseOS=NialliacirculansOX=1397GN=CEQ21_04180PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	564.8099975585938	2	564.811648	1127.60874	-2.1858	-0.0012346	0.12689	7.1666E-05	-2.0589	-0.0011629	564.8115908604212	146.02	1.2908	145.8	145.33	146.62	-0.22697					59	25	3	0	0	0	0.6959	1	14765	14765		19.36	1.995	1	117310	+		7255	30916	5846	5855	8379	8379					0.050042366001889604
EILGDHDKDF	10	Unmodified	_EILGDHDKDF_					0	0	0			REV__ENST00000486797.1_1_9:35738494-35738838:-|nuORF	REV__ENST00000486797.1_1_9:35738494-35738838:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.787109375	2	594.78021	1187.54587	1.6252	0.00096663	0.3854	0.00022923	2.0106	0.0011959	594.7801952912697	148.99	1.0753	148.99	148.67	149.75	0					46	21	3	0	0	0	0.026956	1	17402	17402		26.693	10.22	1	284210	+		7256	16884	5847	5856	8380	8380					-0.04040373978523348
EILGSLRPLI	10	Unmodified	_EILGSLRPLI_					0	0	0			REV__ENSG00000059588|ENST00000040877|TARBP1	REV__ENSG00000059588|ENST00000040877|TARBP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.7736206054688	2	555.847699	1109.68084	1.0861	0.0006037	-2.4034	-0.0013359	-1.3173	-0.00073223	555.8465665100284	97.663	0.65752	95.284	95.116	95.773	-2.3786					21	12	2	0	0	0	0.026782	1	8664	8664		30.318	4.7437	1	31258	+		7257	16734	5848	5857	8381	8381					0.13039150953909484
EILGSLRPLI	10	Unmodified	_EILGSLRPLI_					0	0	0			REV__ENSG00000059588|ENST00000040877|TARBP1	REV__ENSG00000059588|ENST00000040877|TARBP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	555.847699	1109.68084	0.81161	0.00045113	-1.491	-0.00082875	-0.67936	-0.00037762	555.8467622994598	96.315	0.79067	95.287	95.013	95.804	-1.0281	-0.056418	-0.00032346	NaN	30.318	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19241	+		7258	16734	5848	5857							0.13039150953909484
EILGSLRPLI	10	Unmodified	_EILGSLRPLI_					0	0	0			REV__ENSG00000059588|ENST00000040877|TARBP1	REV__ENSG00000059588|ENST00000040877|TARBP1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	555.847699	1109.68084	-1.0629	-0.00059083	0.046715	2.5966E-05	-1.0162	-0.00056486	555.8479643044519	97.219	1.1094	95.459	95.001	96.11	-1.7595	0.11569	0.001386	NaN	30.318	28	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30356	+		7259	16734	5848	5857							0.13039150953909484
EILHFTLR	8	Unmodified	_EILHFTLR_					0	0	0		ENSG00000197872|ENST00000381323|CYRIA;ENST00000517801.5_1_8:130863079-130874553:-|nuORF;ENST00000523288.5_1_8:130864395-130891707:-|nuORF;FAM49B|p.L263Yfs*20|1|0.05|ENSG00000153310|chr8:129849297-129849298|-/AA|frameshift_variant;FAM49B|p.I262Sfs*29|1|0.05|ENSG00000153310|chr8:129849299-129849300|-/GGCCTTTGGCCAAAGGAATTAAAGGA|frameshift_variant;ENSG00000153310|ENST00000694912|CYRIB	ENSG00000197872|ENST00000381323|CYRIA;ENST00000517801.5_1_8:130863079-130874553:-|nuORF	ENSG00000197872|ENST00000381323|CYRIA	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.2981567382812	2	514.798009	1027.58147	-0.9286	-0.00047804	4.4027	0.0022665	3.4741	0.0017884	514.8004017214115	28.415	0.34828	28.415	28.24	28.588	0					9	6	2	0	0	0	0.028476	1	929	929		30.504	0	1	81057			7260	8755;5677	5849	5858	8382	8382					0.06877753059779934
EILITVLSAM	10	Unmodified	_EILITVLSAM_					0	0	0		ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A;ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000132507|ENST00000336458|EIF5A	ENSG00000132507|ENST00000336458|EIF5A	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.317138671875	2	545.314843	1088.61513	-0.51373	-0.00028014	3.9729	0.0021665	3.4592	0.0018863	545.3169196404446	142.63	4.7541	141.19	139.73	144.49	-1.4427					172	91	2	0	0	0	0.52321	1	14017	14017		51.335	14.176	1	155190			7261	4143	5850	5859	8383	8383					0.07436993716692086
EILIVKVEE	9	Unmodified	_EILIVKVEE_					0	0	0		nc|ENSG00000103199|O60304-2|ZNF500;ENSG00000103199|ENST00000219478|ZNF500	nc|ENSG00000103199|O60304-2|ZNF500	nc|ENSG00000103199|O60304-2|ZNF500	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.7791748046875	2	536.31844	1070.62233	-1.5201	-0.00081523	3.4149	0.0018315	1.8948	0.0010162	536.8217446234416	51.287	0.45244	48.114	47.821	48.274	-3.1734					10	8	2	0	0	0	0.027462	1	3009	3009		32.812	6.1195	1	12467			7262	2294	5851	5860	8384	8384					0.08984049588775633
EILKLALEEI	10	Unmodified	_EILKLALEEI_					0	0	0			REV__tr|A0A7D6VTF5|A0A7D6VTF5_9CLOTRibosomebiogenesisGTPaseAOS=ClostridiumintestinaleOX=36845GN=ylqFPE=3SV=1	REV__tr|A0A7D6VTF5|A0A7D6VTF5_9CLOTRibosomebiogenesisGTPaseAOS=ClostridiumintestinaleOX=36845GN=ylqFPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.2744140625	2	585.852647	1169.69074	-0.41244	-0.00024163	-2.7804	-0.0016289	-3.1928	-0.0018705	585.8512409127279	51.039	0.38502	51.039	50.863	51.248	0					22	8	3	0	0	0	0.026681	1	3916	3916		44.377	0	1	381130	+		7263	31600	5852	5861	8385	8385					0.11268294168621651
EILKRYVDL	9	Unmodified	_EILKRYVDL_					0	0	0			REV__ENST00000553986.1_1_14:60616802-60619887:-|nuORF	REV__ENST00000553986.1_1_14:60616802-60619887:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	574.8367919921875	2	574.837331	1147.66011	-1.6765	-0.00096369	1.2277	0.00070574	-0.44875	-0.00025796	574.8376226281281	119.93	1.3637	118.59	117.98	119.35	-1.3444					59	25	3	0	0	0	0.40667	1	11268	11268		51.335	0	1	121950	+		7264	17438	5853	5862	8386	8386					0.0921856057423156
EILLPSLGFLL	11	Unmodified	_EILLPSLGFLL_					0	0	0		ENST00000518060.5_2_8:48644710-48648009:+|nuORF	ENST00000518060.5_2_8:48644710-48648009:+|nuORF	ENST00000518060.5_2_8:48644710-48648009:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	405.583984375	3	405.58468	1213.73221	1.6628	0.00067442	-2.9452	-0.0011945	-1.2824	-0.00052012	405.5831216090262	68.754	1.6998	65.94	65.511	67.211	-2.8144					78	33	4	0	0	0	0.70032	1	3013	3013		29.551	2.5034	1	296870			7265	13067	5854	5863	8387	8387					0.13389474927953415
EILLRIEPK	9	Unmodified	_EILLRIEPK_					0	0	0			REV__ENSG00000131467|ENST00000590720|PSME3	REV__ENSG00000131467|ENST00000590720|PSME3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	556.7923583984375	2	555.847699	1109.68084	0.47566	0.0002644	-1.0352	-0.00057539	-0.55949	-0.00031099	555.8468670276975	68.81	0.73912	65.32	65.113	65.852	-3.4902					21	14	2	0	0	0	0.027462	1	5170	5170		26.693	2.1737	1	78835	+		7266	19016	5855	5864	8388	8388					0.13039150953909484
EILLYLET	8	Unmodified	_EILLYLET_					0	0	0		ENST00000347624.3_1_3:194078628-194078922:-|nuORF	ENST00000347624.3_1_3:194078628-194078922:-|nuORF	ENST00000347624.3_1_3:194078628-194078922:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.28717041015625	2	497.278783	992.543014	-0.98722	-0.00049093	2.026	0.0010075	1.0388	0.00051657	497.27895179585346	41.248	1.1491	38.267	37.342	38.491	-2.9804					33	21	3	0	0	0	0.028476	1	1744	1744		7.6903	0	1	21626			7267	10632	5856	5865	8389	8389					0.04644402634630751
EILMLKIVK	9	Unmodified	_EILMLKIVK_					0	0	0			REV__tr|A0A553STN1|A0A553STN1_NIACIThiolreductantABCexportersubunitCydCOS=NialliacirculansOX=1397GN=cydCPE=4SV=1	REV__tr|A0A553STN1|A0A553STN1_NIACIThiolreductantABCexportersubunitCydCOS=NialliacirculansOX=1397GN=cydCPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	543.853271484375	2	543.851396	1085.68824	0.016428	8.9343E-06	2.8119	0.0015292	2.8283	0.0015382	543.8529216565697	32.18	1.2796	32.18	32.006	33.285	0					70	25	5	0	0	0	0.16562	1	1403	1403		82.241	5.4664	1	3609600	+		7268	30987	5857	5866	8390	8390					0.1488216722996185
EILMRKKF	8	Unmodified	_EILMRKKF_					0	0	0			REV__ENSG00000102786|ENST00000311234|INTS6	REV__ENSG00000102786|ENST00000311234|INTS6	MULTI-SECPEP	OvCa9_classI_Rep3	3	533.348388671875	2	532.817887	1063.62122	-0.70523	-0.00037576	-2.3042	-0.0012277	-3.0094	-0.0016035	532.8166495419301	93.683	0.70782	91.721	91.328	92.036	-1.9617					20	13	2	0	0	0	0.028476	1	6047	6047		45.952	21.749	1	31123	+		7269	17571	5858	5867	8391	8391					0.0919555673888226
EILNKAKFL	9	Unmodified	_EILNKAKFL_					0	0	0			REV__nc|ENSG00000042813|Q9BS86-2|ZPBP	REV__nc|ENSG00000042813|Q9BS86-2|ZPBP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.8627319335938	2	538.329142	1074.64373	1.3807	0.00074329	-1.831	-0.00098569	-0.45028	-0.0002424	538.3281306049356	137.1	0.68756	135.56	135.32	136.01	-1.5437					18	13	2	0	0	0	0.027462	1	13333	13333		35.618	1.4457	1	18214	+		7270	16643	5859	5868	8392	8392					0.10939479408125408
EILPVLEQV	9	Unmodified	_EILPVLEQV_					0	0	0		tr|A0A553SGS6|A0A553SGS6_NIACIChaperoninGroELOS=NialliacirculansOX=1397GN=groLPE=3SV=1	tr|A0A553SGS6|A0A553SGS6_NIACIChaperoninGroELOS=NialliacirculansOX=1397GN=groLPE=3SV=1	tr|A0A553SGS6|A0A553SGS6_NIACIChaperoninGroELOS=NialliacirculansOX=1397GN=groLPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3052978515625	2	520.305332	1038.59611	-3.2661	-0.0016994	3.083	0.0016041	-0.18311	-9.5276E-05	520.3067684329717	152.16	1.3327	151.93	151.5	152.83	-0.22696					65	26	4	0	0	0	0.37135	1	15470	15470		54.776	11.912	1	198050			7271	33189	5860	5869	8393	8393					0.07835780417281057
EILRGLAH	8	Unmodified	_EILRGLAH_					0	0	0		nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4;ENST00000489490.1_1_2:102441786-102446061:+|nuORF;MAP4K4|p.H151Mfs*19|1|0.05|ENSG00000071054|chr2:101829535-101829536|-/AATGAATGTTTTGAAACCCCCTA|frameshift_variant;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1;ENST00000572330.5_1_17:4736842-4793277:+|nuORF	nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000141503|Q8N4C8-3|MINK1	nc|ENSG00000071054|O95819-4|MAP4K4	MULTI-SECPEP	OvCa9_classI_Rep2	2	455.2431335449219	2	454.769252	907.52395	0.85277	0.00038781	-0.79097	-0.00035971	0.061796	2.8103E-05	454.7686319066171	57.555	0.89523	54.763	54.427	55.323	-2.792					33	17	3	0	0	0	0.028476	1	4167	4167		42.396	20.436	1	47906			7272	1444;15064	5861	5870	8394	8394					0.06648910854221413
EILRNSET	8	Unmodified	_EILRNSET_					0	0	0		tr|A0A553SFS6|A0A553SFS6_NIACIATP-dependenthelicase/nucleasesubunitAOS=NialliacirculansOX=1397GN=addAPE=3SV=1	tr|A0A553SFS6|A0A553SFS6_NIACIATP-dependenthelicase/nucleasesubunitAOS=NialliacirculansOX=1397GN=addAPE=3SV=1	tr|A0A553SFS6|A0A553SFS6_NIACIATP-dependenthelicase/nucleasesubunitAOS=NialliacirculansOX=1397GN=addAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.2493896484375	2	481.251089	960.487624	-0.098429	-4.7369E-05	-1.104	-0.00053131	-1.2024	-0.00057868	481.25024365935224	47.259	0.48021	47.259	46.985	47.465	0					13	10	2	0	0	0	0.028476	1	3416	3416		10.265	3.0719	1	43524			7273	33069	5862	5871	8395	8395					0.005799891668516466
EILSFHFLS	9	Unmodified	_EILSFHFLS_					0	0	0			REV__tr|A0A553SPJ4|A0A553SPJ4_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26530PE=4SV=1	REV__tr|A0A553SPJ4|A0A553SPJ4_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26530PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.3023071289062	2	546.78985	1091.56515	0.49333	0.00026975	-4.4152	-0.0024142	-3.9218	-0.0021444	547.2888787566792	160.24	1.1967	160.24	159.66	160.86	0					36	23	2	0	0	0	0.027462	1	18729	18729		37.159	19.794	1	17646	+		7274	30542	5863	5872	8396	8396					0.023026271030403223
EILSRDPLL	9	Unmodified	_EILSRDPLL_					0	0	0		ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	OvCa9_classI_Rep3	3	528.3091430664062	2	528.308406	1054.60226	-1.1947	-0.00063115	1.3812	0.00072969	0.18651	9.8533E-05	528.3090685319486	96.257	1.529	94.428	94.123	95.652	-1.8286					52	29	2	0	0	0	0.3076	1	6326	6326		62.107	3.3255	1	573190			7275	3660	5864	5873	8397	8397					0.07714298648807016
EILSYNNL	8	Unmodified	_EILSYNNL_					0	0	0			REV__tr|A0A553SJI8|A0A553SJI8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_16860PE=4SV=1	REV__tr|A0A553SJI8|A0A553SJI8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_16860PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.8276672363281	2	483.250557	964.486562	-0.11552	-5.5825E-05	-0.259	-0.00012516	-0.37452	-0.00018099	483.25030924127327	78.114	0.62843	75.298	75.067	75.696	-2.8165					21	12	3	0	0	0	0.028476	1	6281	6281		40.778	0	1	53742	+		7276	30009	5865	5874	8398	8398					0.002897747979545784
EILTAIGFGW	10	Unmodified	_EILTAIGFGW_					0	0	0			REV__ENSG00000153294|ENST00000283303|ADGRF4	REV__ENSG00000153294|ENST00000283303|ADGRF4	MULTI-SECPEP	OvCa9_classI_Rep3	3	554.3175048828125	2	553.797675	1105.5808	0.81547	0.00045161	-1.0741	-0.00059481	-0.25858	-0.0001432	554.2969175367152	121.04	1.6133	120.01	119.66	121.27	-1.0271					75	30	4	0	0	0	0.026871	1	9344	9344		21.96	0	1	78662	+		7277	20337	5866	5875	8399	8399					0.03222913620084
EILTREHI	8	Unmodified	_EILTREHI_					0	0	0		nc|ENSG00000088970|Q2M2Z5-5|KIZ;nc|ENSG00000088970|Q2M2Z5-2|KIZ;nc|ENSG00000088970|Q2M2Z5-3|KIZ;KIZ|p.S616Rfs*21|1|0.21|ENSG00000088970|chr20:21232797-21232798|-/GC|frameshift_variant;nc|ENSG00000088970|Q2M2Z5-4|KIZ;ENSG00000088970|ENST00000619189|KIZ	nc|ENSG00000088970|Q2M2Z5-5|KIZ	nc|ENSG00000088970|Q2M2Z5-5|KIZ	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.26080322265625	2	505.785099	1009.55564	2.3237	0.0011753	-0.88178	-0.00044599	1.4419	0.00072929	505.7844455552263	76.18	0.56218	76.18	75.956	76.518	0					25	13	3	0	0	0	0.028476	1	7610	7610		19.36	0	1	1032500			7278	1800	5867	5876	8400	8400					0.051248588175326404
EILVEQIPK	9	Unmodified	_EILVEQIPK_					0	0	0			REV__ENST00000508511.5_1_4:99997418-100009857:-|nuORF	REV__ENST00000508511.5_1_4:99997418-100009857:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	534.8197021484375	2	534.818607	1067.62266	1.2549	0.00067113	0.98969	0.00052931	2.2446	0.0012004	534.8189922325787	144.51	1.1146	144.51	144.16	145.27	0					53	22	4	0	0	0	0.48047	1	16905	16905		44.377	0	1	784270	+		7279	22965	5868	5877	8401	8401					0.09155469308598185
EILVHYPDS	9	Unmodified	_EILVHYPDS_					0	0	0		nc|ENSG00000170289|Q9NQW8-2|CNGB3;ENSG00000170289|ENST00000320005|CNGB3	nc|ENSG00000170289|Q9NQW8-2|CNGB3	nc|ENSG00000170289|Q9NQW8-2|CNGB3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.3037109375	2	536.769114	1071.52368	-0.55533	-0.00029809	3.2911	0.0017665	2.7357	0.0014685	536.7706902023393	112.82	0.69163	111.36	111.15	111.84	-1.4608					17	13	2	0	0	0	0.027462	1	10458	10458		23.042	0	1	21987			7280	7090	5869	5878	8402	8402					-0.009225536563008063
EILVHYPDS	9	Unmodified	_EILVHYPDS_					0	0	0		nc|ENSG00000170289|Q9NQW8-2|CNGB3;ENSG00000170289|ENST00000320005|CNGB3	nc|ENSG00000170289|Q9NQW8-2|CNGB3	nc|ENSG00000170289|Q9NQW8-2|CNGB3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	536.769114	1071.52368	-0.42072	-0.00022583	3.3012	0.001772	2.8805	0.0015462	536.7706899394717	111.69	0.78821	111.55	111.32	112.11	-0.13961	0.095905	6.2215E-06	NaN	23.042	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13682			7281	7090	5869	5878							-0.009225536563008063
EILVINPPK	9	Unmodified	_EILVINPPK_					0	0	0			REV__tr|A0A7D6ZH71|A0A7D6ZH71_9CLOTtRNA1(Val)(Adenine(37)-N6)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01800PE=4SV=1	REV__tr|A0A7D6ZH71|A0A7D6ZH71_9CLOTtRNA1(Val)(Adenine(37)-N6)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01800PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	511.81378173828125	2	511.815867	1021.61718	-1.0737	-0.00054956	-1.8225	-0.00093277	-2.8962	-0.0014823	511.81478887315143	50.018	2.3782	47.224	46.637	49.015	-2.794					105	47	4	0	0	0	0.50149	1	3192	3192		42.396	5.237	1	277830	+		7282	32018	5870	5879	8403	8403					0.10723790516806275
EILVQGKSTE	10	Unmodified	_EILVQGKSTE_					0	0	0			REV__tr|A0A553SU79|A0A553SU79_NIACISpoIID/LytBdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06510PE=4SV=1	REV__tr|A0A553SU79|A0A553SU79_NIACISpoIID/LytBdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06510PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	552.8361206054688	2	552.300778	1102.587	-0.67081	-0.00037049	3.2805	0.0018118	2.6097	0.0014413	552.3016857492015	109.54	0.31492	108.4	108.24	108.56	-1.1444					9	5	3	0	0	0	0.026843	1	7867	7867		38.754	10.871	1	9634.2	+		7283	31049	5871	5880	8404	8404					0.03981387060935049
EILYFLLI	8	Unmodified	_EILYFLLI_					0	0	0		ENST00000307602.8_1_8:42885180-42885507:+|nuORF	ENST00000307602.8_1_8:42885180-42885507:+|nuORF	ENST00000307602.8_1_8:42885180-42885507:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.3023681640625	2	512.309887	1022.60522	0.38172	0.00019556	0.94887	0.00048611	1.3306	0.00068167	512.810528936104	103.77	0.8381	102.33	102.08	102.92	-1.4347					19	15	2	0	0	0	0.028476	1	7176	7176		25.45	6.0902	1	18272			7284	10257	5872	5881	8405	8405					0.09482173773631075
EILYKNINL	9	Unmodified	_EILYKNINL_					0	0	0		tr|A0A7D6ZU83|A0A7D6ZU83_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23130PE=4SV=1	tr|A0A7D6ZU83|A0A7D6ZU83_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23130PE=4SV=1	tr|A0A7D6ZU83|A0A7D6ZU83_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23130PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.352783203125	2	560.324057	1118.63356	-0.18192	-0.00010194	-1.242	-0.00069595	-1.424	-0.00079788	560.3227769369811	95.455	0.95579	92.986	92.761	93.717	-2.4685					30	18	3	0	0	0	0.027462	1	8439	8439		42.396	1.618	1	35307			7285	35770	5873	5882	8406	8406					0.07898871682891695
EILYKNINL	9	Unmodified	_EILYKNINL_					0	0	0		tr|A0A7D6ZU83|A0A7D6ZU83_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23130PE=4SV=1	tr|A0A7D6ZU83|A0A7D6ZU83_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23130PE=4SV=1	tr|A0A7D6ZU83|A0A7D6ZU83_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23130PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	560.324057	1118.63356	0.063363	3.5504E-05	-1.2497	-0.00070026	-1.1864	-0.00066476	560.3232201541683	94.23	1.0997	93.13	92.801	93.901	-1.0995	0.097082	-0.00012763	NaN	60.972	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20778			7286	35770	5873	5882							0.07898871682891695
EILYKNINL	9	Unmodified	_EILYKNINL_					0	0	0		tr|A0A7D6ZU83|A0A7D6ZU83_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23130PE=4SV=1	tr|A0A7D6ZU83|A0A7D6ZU83_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23130PE=4SV=1	tr|A0A7D6ZU83|A0A7D6ZU83_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23130PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	560.324057	1118.63356	-0.84896	-0.00047569	-0.74494	-0.00041741	-1.5939	-0.0008931	560.3236592647305	94.879	0.80351	92.983	92.712	93.515	-1.8956	-0.05008	0.00043808	NaN	60.972	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35252			7287	35770	5873	5882							0.07898871682891695
EIMDKETEN	9	Unmodified	_EIMDKETEN_					0	0	0			REV__tr|A0A7D6W0Z7|A0A7D6W0Z7_9CLOTHlyC/CorCfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_01725PE=3SV=1	REV__tr|A0A7D6W0Z7|A0A7D6W0Z7_9CLOTHlyC/CorCfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_01725PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.3471069335938	2	554.744979	1107.4754	0.91462	0.00050738	-0.22388	-0.0001242	0.69074	0.00038319	554.7448225047498	114.11	1.2768	112.67	112.24	113.52	-1.4461					35	24	2	0	0	0	0.027462	1	10649	10649		26.693	0	1	37423	+		7288	31870	5874	5883	8407	8407					-0.07403415358476195
EIMKISEEI	9	Unmodified	_EIMKISEEI_					0	0	0		tr|A0A7D6VP52|A0A7D6VP52_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15300PE=4SV=1	tr|A0A7D6VP52|A0A7D6VP52_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15300PE=4SV=1	tr|A0A7D6VP52|A0A7D6VP52_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15300PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	546.2855224609375	2	546.286282	1090.55801	-1.7842	-0.00097466	1.4803	0.00080868	-0.30384	-0.00016598	546.2868719902328	137.72	1.1662	136.63	136.24	137.41	-1.0858					55	23	3	0	0	0	0.42676	1	11245	11245		49.442	1.7842	1	134560			7289	34750	5875	5884	8408	8408					0.016355264403273395
EIMKRTRR	8	Unmodified	_EIMKRTRR_					0	0	0		nc|ENSG00000135525|Q14244-5|MAP7;nc|ENSG00000135525|Q14244-3|MAP7;nc|ENSG00000135525|Q14244-2|MAP7;nc|ENSG00000135525|Q14244-6|MAP7;nc|ENSG00000135525|Q14244-4|MAP7;ENSG00000135525|ENST00000354570|MAP7;nc|ENSG00000135525|Q14244-7|MAP7	nc|ENSG00000135525|Q14244-5|MAP7	nc|ENSG00000135525|Q14244-5|MAP7	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3167114257812	2	545.319117	1088.62368	-2.8527	-0.0015556	-1.5958	-0.00087021	-4.4485	-0.0024258	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.73626	1	11741	11741		33.516	3.0119	1	337600			7290	4386	5876	5885	8409	8409					0.08291405196541746
EIMLHHCF	8	Unmodified	_EIMLHHCF_					0	0	0		ENSG00000115474|ENST00000233826|KCNJ13	ENSG00000115474|ENST00000233826|KCNJ13	ENSG00000115474|ENST00000233826|KCNJ13	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.2820434570312	2	515.235873	1028.45719	0.95183	0.00049042	-2.9752	-0.0015329	-2.0233	-0.0010425	515.2346381927604	106.64	0.31265	105.38	105.16	105.48	-1.267					8	5	2	0	0	0	0.028476	1	7534	7534		31.579	6.1287	1	6862.3			7291	3101	5877	5886	8410	8410					-0.055897840235275
EIMPDVQDPK	10	Unmodified	_EIMPDVQDPK_					0	0	0		nc|ENSG00000122483|Q5T9S5|CCDC18;ENSG00000122483|ENST00000690025|CCDC18	nc|ENSG00000122483|Q5T9S5|CCDC18	nc|ENSG00000122483|Q5T9S5|CCDC18	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.7939453125	2	586.286814	1170.55907	1.7776	0.0010422	-3.8656	-0.0022664	-2.088	-0.0012242	586.2846403437609	91.392	1.1917	91.392	90.816	92.008	0					48	28	4	0	0	0	0.026803	1	9899	9899		40.058	0	1	3565800			7292	3535	5878	5887	8411	8411					-0.01938259190796998
EIMPEGSLLI	10	Unmodified	_EIMPEGSLLI_					0	0	0		ENSG00000177558|ENST00000324675|FAM187B	ENSG00000177558|ENST00000324675|FAM187B	ENSG00000177558|ENST00000324675|FAM187B	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.8261108398438	2	551.29665	1100.57875	1.8784	0.0010356	1.577	0.00086941	3.4554	0.001905	551.2985474264027	85.625	0.28942	85.625	85.502	85.791	0					9	6	2	0	0	0	0.027255	1	8996	8996		111.65	0	1	183360			7293	7693	5879	5888	8412	8412					0.03248116819986535
EIMTKRSNY	9	Unmodified	_EIMTKRSNY_					0	0	0		ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.3347778320312	2	571.287148	1140.55974	2.4099	0.0013768	0.788	0.00045018	3.198	0.0018269	571.2875190360369	115.73	0.83625	115.73	115.39	116.23	0					42	17	3	0	0	0	0.027462	1	13195	13195		34.173	8.5985	1	360640			7294	8967	5880	5889	8413	8413					-0.004914197510743179
EINDIGEKI	9	Unmodified	_EINDIGEKI_					0	0	0		tr|A0A7D7AFP4|A0A7D7AFP4_9CLOTMetallo-beta-lactamasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06455PE=4SV=1	tr|A0A7D7AFP4|A0A7D7AFP4_9CLOTMetallo-beta-lactamasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06455PE=4SV=1	tr|A0A7D7AFP4|A0A7D7AFP4_9CLOTMetallo-beta-lactamasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06455PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.2735595703125	2	515.774396	1029.53424	1.9517	0.0010066	-3.6089	-0.0018614	-1.6572	-0.00085475	516.2730276447775	76.36	1.2164	76.36	76.036	77.252	0					70	29	3	0	0	0	0.075543	1	7675	7675		104.06	2.4561	1	21428000			7295	36259	5881	5890	8414	8414					0.02065428998139396
EINDPIDNI	9	Unmodified	_EINDPIDNI_					0	0	0			REV__tr|A0A7D6VSB1|A0A7D6VSB1_9CLOTHypoxanthinephosphoribosyltransferaseOS=ClostridiumintestinaleOX=36845GN=hptPE=3SV=1	REV__tr|A0A7D6VSB1|A0A7D6VSB1_9CLOTHypoxanthinephosphoribosyltransferaseOS=ClostridiumintestinaleOX=36845GN=hptPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.8770751953125	2	521.756204	1041.49785	1.5169	0.00079147	-3.0015	-0.001566	-1.4845	-0.00077457	521.7536807865096	98.078	0.46693	98.078	97.78	98.247	0					25	10	4	0	0	0	0.027462	1	10795	10795		29.17	2.4771	1	217660	+		7296	31482	5882	5891	8415	8415					-0.021234478985888927
EINDYFNN	8	Unmodified	_EINDYFNN_					0	0	0			REV__ENSG00000157625|ENST00000288422|TAB3	REV__ENSG00000157625|ENST00000288422|TAB3	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.2820434570312	2	514.719621	1027.42469	0.8596	0.00044245	1.0206	0.00052533	1.8802	0.00096778	514.7196141078546	106.84	0.4932	105.58	105.27	105.76	-1.267					13	9	2	0	0	0	0.028476	1	7534	7534		26.693	13.734	1	35127	+		7297	20526	5883	5892	8416	8416					-0.0879257662118107
EINFEELLK	9	Unmodified	_EINFEELLK_					0	0	0		nc|ENSG00000162614|Q0ZGT2-4|NEXN;nc|ENSG00000162614|Q0ZGT2-3|NEXN;nc|ENSG00000162614|Q0ZGT2-2|NEXN;ENSG00000162614|ENST00000334785|NEXN	nc|ENSG00000162614|Q0ZGT2-4|NEXN	nc|ENSG00000162614|Q0ZGT2-4|NEXN	MULTI-MSMS	OvCa9_classI_Rep4_	4	568.3092041015625	2	567.805697	1133.59684	-1.3765	-0.00078159	1.4664	0.00083261	0.089861	5.1024E-05	568.3093196846492	107.63	1.3333	105.75	105.33	106.66	-1.8785					38	26	2	0	0	0	0.56189	1	9831	9831		36.447	3.6343	1	208820			7298	6202	5884	5893	8417	8417					0.035385750663408544
EINGELIEL	9	Unmodified	_EINGELIEL_					0	0	0			REV__tr|A0A7D6VSG8|A0A7D6VSG8_9CLOTDNAprimaseOS=ClostridiumintestinaleOX=36845GN=dnaGPE=3SV=1	REV__tr|A0A7D6VSG8|A0A7D6VSG8_9CLOTDNAprimaseOS=ClostridiumintestinaleOX=36845GN=dnaGPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.27783203125	2	515.276772	1028.53899	2.1426	0.001104	-0.080892	-4.1682E-05	2.0617	0.0010624	515.2765929433157	120.81	1.1956	120.81	120.61	121.8	0					64	26	4	0	0	0	0.40667	1	13949	13949		51.335	1.8939	1	2042800	+		7299	31501	5885	5894	8418	8418					0.02586313140909624
EINGKSYSKL	10	Unmodified	_EINGKSYSKL_					0	0	0		tr|A0A553SRT2|A0A553SRT2_NIACIStageIIsporulationproteinPOS=NialliacirculansOX=1397GN=CEQ21_01650PE=4SV=1	tr|A0A553SRT2|A0A553SRT2_NIACIStageIIsporulationproteinPOS=NialliacirculansOX=1397GN=CEQ21_01650PE=4SV=1	tr|A0A553SRT2|A0A553SRT2_NIACIStageIIsporulationproteinPOS=NialliacirculansOX=1397GN=CEQ21_01650PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2774047851562	2	569.808771	1137.60299	2.6033	0.0014834	0.9395	0.00053533	3.5428	0.0020187	569.8084358389809	98.858	0.47151	98.858	98.764	99.236	0					12	11	2	0	0	0	0.026867	1	10891	10891		35.152	10.633	1	415070			7300	34294	5886	5895	8419	8419					0.03969093297860127
EINILTIPR	9	Unmodified	_EINILTIPR_					0	0	0			REV__L1MA1_dup882|chr3:174894625-174897831:+|1.387705056550523|0.3345806313734131|2.05|429.0|12|1|sense	REV__L1MA1_dup882|chr3:174894625-174897831:+|1.387705056550523|0.3345806313734131|2.05|429.0|12|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.2869873046875	2	534.824224	1067.63389	-1.8552	-0.00099221	-3.5148	-0.0018798	-5.37	-0.002872	534.8225717930823	54.303	0.40918	51.055	50.774	51.183	-3.2474					11	7	2	0	0	0	0.027462	1	3335	3335		33.922	3.6039	1	45394	+		7301	28374	5887	5896	8420	8420					0.10278291402732975
EINILTIPR	9	Unmodified	_EINILTIPR_					0	0	0			REV__L1MA1_dup882|chr3:174894625-174897831:+|1.387705056550523|0.3345806313734131|2.05|429.0|12|1|sense	REV__L1MA1_dup882|chr3:174894625-174897831:+|1.387705056550523|0.3345806313734131|2.05|429.0|12|1|sense	MULTI-MATCH	OvCa99_classI_Rep5	1		2	534.824224	1067.63389	-0.44743	-0.0002393	-5.613	-0.003002	-6.0604	-0.0032413	534.8213376243301	50.797	0.26709	50.797	50.64	50.907	0	-0.12885	-0.00080739	NaN	41.427	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79761	+		7302	28374	5887	5896							0.10278291402732975
EINIVPMKK	9	Unmodified	_EINIVPMKK_					0	0	0			REV__chr7:93591771-93906736|128|11.17|0.01|10.8|+|2|GNGT1,GNGT1|1	REV__chr7:93591771-93906736|128|11.17|0.01|10.8|+|2|GNGT1,GNGT1|1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.3174438476562	2	536.315177	1070.6158	0.082371	4.4177E-05	3.0407	0.0016308	3.1231	0.0016749	536.3167283010398	32.08	0.74461	32.08	31.906	32.651	0					25	14	2	0	0	0	0.56189	1	1366	1366		36.447	2.9312	1	726330	+		7303	16100	5888	5897	8421	8421					0.08331833156398716
EINKIRTPE	9	Unmodified	_EINKIRTPE_					0	0	0		ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	MULTI-SECPEP	OvCa9_classI_Rep3	3	550.2808837890625	2	550.308938	1098.60332	-1.0869	-0.00059812	-3.3601	-0.0018491	-4.447	-0.0024472	550.8080425881158	95.303	0.55254	93.407	93.211	93.763	-1.8956					15	10	2	0	0	0	0.027425	1	6182	6182		72.879	8.672	1	16223			7304	8802	5889	5898	8422	8422					0.05796513017708094
EINKIRTPE	9	Unmodified	_EINKIRTPE_					0	0	0		ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	MULTI-MATCH	OvCa99_classI_Rep5	1		2	550.308938	1098.60332	1.6642	0.00091581	3.1409	0.0017285	4.8051	0.0026443	550.311290428673	93.734	0.25035	93.734	93.673	93.923	0	0.16355	0.0039395	NaN	82.75	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215460			7305	8802	5889	5898							0.05796513017708094
EINKKIFGN	9	Unmodified	_EINKKIFGN_					0	0	0		ENST00000468592.5_1_2:172300063-172325523:+|nuORF;ENSG00000115827|ENST00000375255|DCAF17	ENST00000468592.5_1_2:172300063-172325523:+|nuORF	ENST00000468592.5_1_2:172300063-172325523:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8011474609375	2	531.800749	1061.58694	-0.1228	-6.5303E-05	-0.13078	-6.9549E-05	-0.25358	-0.00013485	531.800515981788	118.08	1.1889	117.05	116.54	117.73	-1.0324					51	23	4	0	0	0	0.46356	1	8898	8898		45.972	3.5761	1	254040			7306	3131	5890	5899	8423	8423					0.05861431851622001
EINKLLRPD	9	Unmodified	_EINKLLRPD_					0	0	0			REV__nc|ENSG00000132932|Q9NTI2-3|ATP8A2	REV__nc|ENSG00000132932|Q9NTI2-3|ATP8A2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.2811889648438	2	549.319306	1096.62406	-0.45067	-0.00024756	0.90686	0.00049815	0.45619	0.00025059	549.3197231790058	96.101	1.7568	93.675	92.904	94.661	-2.4256					105	34	5	0	0	0	0.027461	1	8448	8448		49.442	5.0644	1	265060	+		7307	15679	5891	5900	8424	8424					0.07961103397406077
EINLGQLLYA	10	Unmodified	_EINLGQLLYA_					0	0	0			REV__nc|ENSG00000154975|Q9NS85-2|CA10	REV__nc|ENSG00000154975|Q9NS85-2|CA10	MULTI-SECPEP	OvCa9_classI_Rep2	2	567.3482055664062	2	567.313689	1132.61282	1.151	0.00065296	2.9078	0.0016497	4.0588	0.0023026	567.3151424987401	90.951	1.2949	89.715	89.242	90.537	-1.2355					41	24	2	0	0	0	0.026915	1	8031	8031		35.618	2.8678	1	94364	+		7308	20408	5892	5901	8425	8425					0.051822813032458726
EINLPKHVI	9	Unmodified	_EINLPKHVI_					0	0	0		ENSG00000128000|ENST00000434248|ZNF780B	ENSG00000128000|ENST00000434248|ZNF780B	ENSG00000128000|ENST00000434248|ZNF780B	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8169555664062	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.59983	1	13748	13748		31.955	7.7521	1	166960			7309	3861	5893	5902	8426	8426					0.09498308748334239
EINMTRQQLWF	11	Unmodified	_EINMTRQQLWF_					0	0	0		tr|A0A7D6ZIV8|A0A7D6ZIV8_9CLOTL,D-transpeptidase/peptidoglycanbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08680PE=4SV=1	tr|A0A7D6ZIV8|A0A7D6ZIV8_9CLOTL,D-transpeptidase/peptidoglycanbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08680PE=4SV=1	tr|A0A7D6ZIV8|A0A7D6ZIV8_9CLOTL,D-transpeptidase/peptidoglycanbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08680PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	488.75982666015625	3	489.246733	1464.71837	-0.56506	-0.00027645	2.6231	0.0012833	2.058	0.0010069	489.247942181002	69.541	0.87668	66.06	65.811	66.688	-3.4812					42	17	4	0	0	0	0.026344	1	5188	5188		9.6461	0.43434	1	322920			7310	35627	5894	5903	8427	8427					0.004598741571953724
EINQDLYEI	9	Unmodified	_EINQDLYEI_					0	0	0		tr|A0A7D7A2A4|A0A7D7A2A4_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16000PE=4SV=1	tr|A0A7D7A2A4|A0A7D7A2A4_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16000PE=4SV=1	tr|A0A7D7A2A4|A0A7D7A2A4_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16000PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	568.311279296875	2	568.777136	1135.53972	-0.95861	-0.00054524	-3.9919	-0.0022705	-4.9505	-0.0028157	568.7754605705986	87.824	0.72136	85.648	85.19	85.911	-2.1768					15	13	2	0	0	0	0.027462	1	5332	5332		31.53	0	1	18157			7311	36069	5895	5904	8428	8428					-0.022628922100466298
EINWGIQIF	9	Unmodified	_EINWGIQIF_					0	0	0			REV__tr|A0A553SJL7|A0A553SJL7_NIACIFAD-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16975PE=4SV=1	REV__tr|A0A553SJL7|A0A553SJL7_NIACIFAD-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16975PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	560.7772827148438	2	560.295299	1118.57605	1.1749	0.00065828	2.9806	0.00167	4.1554	0.0023283	560.2972191614299	75.645	1.3015	72.706	71.921	73.222	-2.9389					56	26	3	0	0	0	0.027426	1	6017	6017		56.721	0	1	169400	+		7312	30015	5896	5905	8429	8429					0.02150029477343196
EIPARIEVK	9	Unmodified	_EIPARIEVK_					0	0	0		ENST00000464003.1_1_2:206547836-206547896:+|nuORF	ENST00000464003.1_1_2:206547836-206547896:+|nuORF	ENST00000464003.1_1_2:206547836-206547896:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.771484375	2	527.816399	1053.61824	-0.25139	-0.00013269	-0.26611	-0.00014046	-0.5175	-0.00027314	527.816163503637	97.117	1.1314	96.158	95.777	96.908	-0.95857					48	22	3	0	0	0	0.027462	1	8737	8737		17.365	5.8539	1	176770			7313	12238	5897	5906	8430	8430					0.09358004885712035
EIPARIEVK	9	Unmodified	_EIPARIEVK_					0	0	0		ENST00000464003.1_1_2:206547836-206547896:+|nuORF	ENST00000464003.1_1_2:206547836-206547896:+|nuORF	ENST00000464003.1_1_2:206547836-206547896:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	527.816399	1053.61824	-0.84603	-0.00044655	0.037507	1.9797E-05	-0.80853	-0.00042675	527.8164358628388	97.891	1.2206	96.132	95.818	97.038	-1.7595	0.003524	-4.1529E-05	NaN	21.96	52	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219420			7314	12238	5897	5906							0.09358004885712035
EIPEAYFIR	9	Unmodified	_EIPEAYFIR_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9-2|NBEA	ENSG00000172915|ENST00000379939|NBEA	ENSG00000172915|ENST00000379939|NBEA	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.2973022460938	2	569.300581	1136.58661	2.2906	0.001304	-0.21339	-0.00012148	2.0772	0.0011826	569.3003171846732	95.818	0.58826	95.818	95.451	96.039	0					16	13	2	0	0	0	0.027462	1	10439	10439		21.96	0	1	218260			7315	7329	5898	5907	8431	8431					0.02378012131748619
EIPEPGRLV	9	Unmodified	_EIPEPGRLV_					0	0	0			REV__tr|A0A7D6VXR0|A0A7D6VXR0_9CLOTSerine/threonineproteinphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_12940PE=4SV=1	REV__tr|A0A7D6VXR0|A0A7D6VXR0_9CLOTSerine/threonineproteinphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_12940PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.31256103515625	2	505.287474	1008.5604	-0.70793	-0.00035771	0.80757	0.00040806	0.099638	5.0346E-05	505.2877697466644	53.576	0.51405	53.576	53.26	53.774	0					18	11	2	0	0	0	0.027462	1	4271	4271		23.042	0	1	315680	+		7316	31786	5899	5908	8432	8432					0.05645742960280131
EIPFHQGYL	9	Unmodified	_EIPFHQGYL_					0	0	0			REV__ENST00000468312.1_1_17:40370167-40384145:-|nuORF	REV__ENST00000468312.1_1_17:40370167-40384145:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	552.8361206054688	2	552.279649	1102.54475	-0.64306	-0.00035515	0.13005	7.1826E-05	-0.51301	-0.00028332	552.2799957619887	109.79	0.4196	108.65	108.35	108.77	-1.1444					10	7	2	0	0	0	0.027462	1	7873	7873		53.351	22.848	1	6576	+		7317	18788	5900	5909	8433	8433					-0.0024254355676021078
EIPFMELEV	9	Unmodified	_EIPFMELEV_					0	0	0		ENST00000360085.6_1_17:42043665-42081769:-|nuORF	ENST00000360085.6_1_17:42043665-42081769:-|nuORF	ENST00000360085.6_1_17:42043665-42081769:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.3471069335938	2	553.775551	1105.53655	0.76104	0.00042145	2.5681	0.0014221	3.3291	0.0018436	553.7766501662923	114.68	1.0451	113.28	112.68	113.72	-1.3977					32	19	3	0	0	0	0.027462	1	10649	10649		29.15	6.1071	1	48203			7318	10767	5901	5910	8434	8434					-0.01199858588392999
EIPKIRYI	8	Unmodified	_EIPKIRYI_					0	0	0		nc|ENSG00000115841|Q96LZ7-2|RMDN2	nc|ENSG00000115841|Q96LZ7-2|RMDN2	nc|ENSG00000115841|Q96LZ7-2|RMDN2	MULTI-SECPEP	OvCa9_classI_Rep2	2	516.2852172851562	2	516.316035	1030.61752	-0.54104	-0.00027935	3.937	0.0020327	3.396	0.0017534	516.317928032224	57.095	0.24899	54.303	54.178	54.427	-2.792					6	4	2	0	0	0	0.028476	1	4060	4060		57.811	0	1	10847			7319	14979	5902	5911	8435	8435					0.10343210236646883
EIPLFIEP	8	Unmodified	_EIPLFIEP_					0	0	0			REV__ENSG00000159307|ENST00000360835|SCUBE1	REV__ENSG00000159307|ENST00000360835|SCUBE1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.2539367675781	2	479.268219	956.521884	-0.35025	-0.00016787	-3.7987	-0.0018206	-4.149	-0.0019885	479.2660811398637	79.781	0.5789	77.03	76.797	77.376	-2.7514					16	11	2	0	0	0	0.028476	1	6488	6488		17.365	5.1581	1	30528	+		7320	20607	5903	5912	8436	8436					0.041884373257630614
EIPLFIEP	8	Unmodified	_EIPLFIEP_					0	0	0			REV__ENSG00000159307|ENST00000360835|SCUBE1	REV__ENSG00000159307|ENST00000360835|SCUBE1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	479.268219	956.521884	0.53571	0.00025675	-4.9452	-0.0023701	-4.4095	-0.0021133	479.26590272233847	79.367	0.60352	77.027	76.705	77.309	-2.3399	-0.0012685	-0.00027071	NaN	23.042	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36855	+		7321	20607	5903	5912							0.041884373257630614
EIPLLIGG	8	Unmodified	_EIPLLIGG_					0	0	0		tr|A0A7D6ZSE6|A0A7D6ZSE6_9CLOTMethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metHPE=3SV=1	tr|A0A7D6ZSE6|A0A7D6ZSE6_9CLOTMethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metHPE=3SV=1	tr|A0A7D6ZSE6|A0A7D6ZSE6_9CLOTMethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metHPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	406.2483825683594	2	406.249829	810.485105	0.12737	5.1745E-05	-3.126	-0.00127	-2.9987	-0.0012182	406.2484453732125	140.19	2.0181	139.96	139.4	141.42	-0.22697					109	40	4	0	0	0	0.74679	1	14007	14007		28.254	1.4582	1	304300			7322	35736	5904	5913	8437	8437					0.07228185499855044
EIPPFANET	9	Unmodified	_EIPPFANET_					0	0	0			REV__ENST00000557684.5_1_12:25267803-25348012:-|nuORF	REV__ENST00000557684.5_1_12:25267803-25348012:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.76336669921875	2	509.248015	1016.48148	0.2342	0.00011927	-3.8762	-0.001974	-3.642	-0.0018547	509.74644495767734	58.192	0.16734	58.192	58.069	58.237	0					5	3	2	0	0	0	0.027462	1	4925	4925		30.504	11.144	1	52506	+		7323	18390	5905	5914	8438	8438					-0.026105290646682988
EIPSRIQAI	9	Unmodified	_EIPSRIQAI_					0	0	0		nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.82470703125	2	513.800749	1025.58694	-0.16135	-8.2902E-05	-0.72834	-0.00037422	-0.88969	-0.00045712	514.3016473619091	46.975	0.53204	46.975	46.676	47.208	0					14	11	2	0	0	0	0.02744	1	3344	3344		62.107	5.3864	1	49729			7324	1550	5906	5915	8439	8439					0.07517431851601941
EIPVPVLR	8	Unmodified	_EIPVPVLR_					0	0	0		nc|ENSG00000133619|A5PL33-3|KRBA1;nc|ENSG00000133619|A5PL33-2|KRBA1;nc|ENSG00000133619|A5PL33|KRBA1;ENSG00000133619|ENST00000496259|KRBA1	nc|ENSG00000133619|A5PL33-3|KRBA1	nc|ENSG00000133619|A5PL33-3|KRBA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	462.2211608886719	2	461.789653	921.564752	2.322	0.0010723	0.2053	9.4806E-05	2.5273	0.0011671	461.78967546256064	96.596	1.3578	96.596	96.296	97.654	0					63	31	4	0	0	0	0.028476	1	10632	10632		50.025	7.5501	1	1962400			7325	4227	5907	5916	8440	8440					0.10083252173865276
EIPYKGKDL	9	Unmodified	_EIPYKGKDL_					0	0	0		ENSG00000057149|ENST00000283752|SERPINB3;ENSG00000206073|ENST00000341074|SERPINB4	ENSG00000057149|ENST00000283752|SERPINB3	ENSG00000057149|ENST00000283752|SERPINB3	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.2420654296875	2	531.795132	1061.57571	2.5932	0.0013791	0.76813	0.00040849	3.3614	0.0017876	531.7948916583508	75.702	0.31406	75.702	75.523	75.837	0					12	7	2	0	0	0	0.027403	1	7550	7550		60.118	8.7828	1	433080			7326	1233	5908	5917	8441	8441					0.04738609757487211
EIQALKNQL	9	Unmodified	_EIQALKNQL_					0	0	0		ENSG00000168172|ENST00000307602|HOOK3	ENSG00000168172|ENST00000307602|HOOK3	ENSG00000168172|ENST00000307602|HOOK3	MULTI-MSMS	OvCa9_classI_Rep2	2	529.3054809570312	2	528.806031	1055.59751	-1.2413	-0.00065642	-1.9712	-0.0010424	-3.2125	-0.0016988	529.3059963064875	103.84	3.275	103.27	102.83	106.11	-0.57639					87	65	2	0	0	0	0.49652	1	9612	9612		42.864	2.0861	1	765080			7327	6878	5909	5918	8442	8442					0.07193414506036788
EIQEGKSHQIQ	11	Unmodified	_EIQEGKSHQIQ_					0	0	0		ZNFX1|p.N1130I|1|0.1|ENSG00000124201|chr20:49249635-49249635|T/A|missense_variant	ZNFX1|p.N1130I|1|0.1|ENSG00000124201|chr20:49249635-49249635|T/A|missense_variant	ZNFX1|p.N1130I|1|0.1|ENSG00000124201|chr20:49249635-49249635|T/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	648.8287963867188	2	648.830766	1295.64698	-1.193	-0.00077405	-4.4237	-0.0028702	-5.6167	-0.0036443	648.8277958533133	125.21	1.3118	123.82	123.49	124.8	-1.3908					53	25	3	0	0	0	0.29709	1	11896	11896		68.626	12.192	1	98340			7328	36327	5910	5919	8443	8443					0.01098077724191171
EIQEGKSHQIQ	11	Unmodified	_EIQEGKSHQIQ_					0	0	0		ZNFX1|p.N1130I|1|0.1|ENSG00000124201|chr20:49249635-49249635|T/A|missense_variant	ZNFX1|p.N1130I|1|0.1|ENSG00000124201|chr20:49249635-49249635|T/A|missense_variant	ZNFX1|p.N1130I|1|0.1|ENSG00000124201|chr20:49249635-49249635|T/A|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	648.830766	1295.64698	-0.72438	-0.00047	-4.8362	-0.0031379	-5.5606	-0.0036079	648.8274950946682	123.93	1.0358	123.7	123.43	124.47	-0.23193	-0.070025	0.00086245	NaN	68.626	44	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82030			7329	36327	5910	5919							0.01098077724191171
EIQEGKSHQIQ	11	Unmodified	_EIQEGKSHQIQ_					0	0	0		ZNFX1|p.N1130I|1|0.1|ENSG00000124201|chr20:49249635-49249635|T/A|missense_variant	ZNFX1|p.N1130I|1|0.1|ENSG00000124201|chr20:49249635-49249635|T/A|missense_variant	ZNFX1|p.N1130I|1|0.1|ENSG00000124201|chr20:49249635-49249635|T/A|missense_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	648.830766	1295.64698	1.3206	0.00085686	-6.8745	-0.0044604	-5.5539	-0.0036035	648.8262731195146	124.84	1.0993	123.79	123.53	124.63	-1.0519	0.020859	-0.0017826	NaN	68.626	44	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111020			7330	36327	5910	5919							0.01098077724191171
EIQIETGN	8	Unmodified	_EIQIETGN_					0	0	0			REV__tr|A0A7D7A4R9|A0A7D7A4R9_9CLOTFamily65glycosylhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02960PE=3SV=1	REV__tr|A0A7D7A4R9|A0A7D7A4R9_9CLOTFamily65glycosylhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02960PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	452.2445983886719	2	452.224539	902.434526	2.3507	0.001063	-2.92	-0.0013205	-0.56934	-0.00025747	452.22375835908514	85.107	0.2478	85.107	85.004	85.252	0					8	5	2	0	0	0	0.028476	1	8908	8908		24.203	4.8428	1	192060	+		7331	32616	5911	5920	8444	8444					-0.020593886158053465
EIQISKISL	9	Unmodified	_EIQISKISL_					0	0	0			REV__nc|ENSG00000176040|Q7RTY8-3|TMPRSS7	REV__nc|ENSG00000176040|Q7RTY8-3|TMPRSS7	MULTI-MSMS	OvCa9_classI_Rep2	2	515.81103515625	2	515.810782	1029.60701	-0.67933	-0.0003504	0.2906	0.00014989	-0.38873	-0.00020051	515.8107542347046	56.253	1.6846	53.45	53.027	54.712	-2.804					94	33	4	0	0	0	0.35694	1	3985	3985		56.434	5.2411	1	455670	+		7332	21928	5912	5921	8445	8445					0.09339182791586609
EIQKIKLGIQ	10	Unmodified	_EIQKIKLGIQ_					0	0	0		ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	ENSG00000143228|ENST00000271452|NUF2	MULTI-MSMS	OvCa99_classI_Rep5	1	585.3652954101562	2	585.366256	1168.71796	-0.65677	-0.00038445	-1.9727	-0.0011547	-2.6295	-0.0015392	585.3650381354653	29.344	0.59898	29.344	29.037	29.636	0					22	11	3	0	0	0	0.73378	1	1045	1045		26.693	2.1737	1	143630			7333	5024	5913	5922	8446	8446					0.1403482249966146
EIQLNHANR	9	Unmodified	_EIQLNHANR_					0	0	0		ENSG00000125414|ENST00000245503|MYH2;ENSG00000109061|ENST00000226207|MYH1;ENSG00000264424|ENST00000255381|MYH4	ENSG00000125414|ENST00000245503|MYH2;ENSG00000109061|ENST00000226207|MYH1;ENSG00000264424|ENST00000255381|MYH4	ENSG00000125414|ENST00000245503|MYH2	MULTI-SECPEP	OvCa9_classI_Rep2	2	546.8114624023438	2	547.788704	1093.56285	-0.44822	-0.00024553	2.2745	0.0012459	1.8263	0.0010004	547.7895774600538	76.416	1.3079	74.562	74.044	75.351	-1.854					64	24	4	0	0	0	0.027462	1	6406	6406		38.806	13.356	1	98450			7334	3707;2691;9518	5914	5923	8447	8447					0.019815914179389438
EIQLNHANR	9	Unmodified	_EIQLNHANR_					0	0	0		ENSG00000125414|ENST00000245503|MYH2;ENSG00000109061|ENST00000226207|MYH1;ENSG00000264424|ENST00000255381|MYH4	ENSG00000125414|ENST00000245503|MYH2;ENSG00000109061|ENST00000226207|MYH1;ENSG00000264424|ENST00000255381|MYH4	ENSG00000125414|ENST00000245503|MYH2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	547.788704	1093.56285	-0.61024	-0.00033428	2.4808	0.001359	1.8706	0.0010247	547.789852898411	77.337	1.3544	74.52	73.86	75.214	-2.8165	-0.10128	3.6843E-05	NaN	30.504	74	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	290390			7335	3707;2691;9518	5914	5923							0.019815914179389438
EIQNKEVACH	10	Unmodified	_EIQNKEVACH_					0	0	0			REV__ENSG00000104321|ENST00000262209|TRPA1	REV__ENSG00000104321|ENST00000262209|TRPA1	MSMS	OvCa99_classI_Rep5	1	585.782958984375	2	585.78223	1169.54991	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.97	1	146.97	146.47	147.47	0								0	0	0	0.14342	1	17192	17192		51.335	3.6781	1		+		7336	17657	5915	5924	8448	8448					-0.028086077564466905
EIQNWQIS	8	Unmodified	_EIQNWQIS_					0	0	0			REV__tr|A0A553SL90|A0A553SL90_NIACI3'-5'exonucleaseDinGOS=NialliacirculansOX=1397GN=dinGPE=3SV=1	REV__tr|A0A553SL90|A0A553SL90_NIACI3'-5'exonucleaseDinGOS=NialliacirculansOX=1397GN=dinGPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.2794494628906	2	509.253631	1016.49271	-1.1068	-0.00056363	1.5039	0.00076586	0.39711	0.00020223	509.254293703721	77.112	1.0255	74.741	74.453	75.478	-2.3715					40	19	3	0	0	0	0.028476	1	3998	3998		24.203	0	1	126420	+		7337	30201	5916	5925	8449	8449					-0.014877069705221402
EIQQERERYRR	11	Unmodified	_EIQQERERYRR_					0	0	0			REV__ENST00000471767.1_1_5:176893910-176894598:-|nuORF	REV__ENST00000471767.1_1_5:176893910-176894598:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.3104858398438	3	521.609722	1561.80734	-1.112	-0.00058004	-1.973	-0.0010291	-3.085	-0.0016092	521.608739228285	53.154	0.90539	49.946	49.651	50.556	-3.208					38	17	3	0	0	0	0.026204	1	3296	3296		21.78	8.8229	1	29746	+		7338	18169	5917	5926	8450	8450					0.04890425441089974
EIQQERERYRR	11	Unmodified	_EIQQERERYRR_					0	0	0			REV__ENST00000471767.1_1_5:176893910-176894598:-|nuORF	REV__ENST00000471767.1_1_5:176893910-176894598:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	521.609722	1561.80734	-0.86179	-0.00044952	-1.8178	-0.0009482	-2.6796	-0.0013977	521.9429943741612	52.658	0.98599	49.844	49.295	50.281	-2.8135	-0.051109	0.00013246	NaN	21.78	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17347	+		7339	18169	5917	5926							0.04890425441089974
EIQQFQYD	8	Unmodified	_EIQQFQYD_					0	0	0			REV__ENST00000594883.1_1_19:57687110-57687311:+|nuORF	REV__ENST00000594883.1_1_19:57687110-57687311:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3505859375	2	535.743096	1069.47164	1.4534	0.00077863	0.28503	0.0001527	1.7384	0.00093133	535.7437919542465	147.51	0.19444	147.51	147.36	147.55	0					6	3	2	0	0	0	0.028476	1	17254	17254		49.442	23.991	1	25864	+		7340	27985	5918	5927	8451	8451					-0.060317170700500355
EIQQLAAYL	9	Unmodified	_EIQQLAAYL_					0	0	0			REV__nc|ENSG00000100629|Q6ZU80-1|CEP128	REV__nc|ENSG00000100629|Q6ZU80-1|CEP128	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.3211059570312	2	524.787307	1047.56006	0.15898	8.3433E-05	-1.1619	-0.00060973	-1.0029	-0.00052629	525.2883406306962	108.65	0.64278	108.42	108.12	108.77	-0.22498					19	12	2	0	0	0	0.027462	1	10171	10171		44.117	0	1	11014	+		7341	17440	5919	5928	8452	8452					0.038183232404207956
EIQQLAAYL	9	Unmodified	_EIQQLAAYL_					0	0	0			REV__nc|ENSG00000100629|Q6ZU80-1|CEP128	REV__nc|ENSG00000100629|Q6ZU80-1|CEP128	MULTI-MATCH	OvCa9_classI_Rep3	3		2	524.787307	1047.56006	-0.58197	-0.00030541	-0.98234	-0.00051552	-1.5643	-0.00082093	524.7868150063913	109.37	0.78842	108.22	107.98	108.77	-1.1444	-0.099332	9.5593E-05	NaN	44.117	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12732	+		7342	17440	5919	5928							0.038183232404207956
EIQRLEDN	8	Unmodified	_EIQRLEDN_					0	0	0		nc|ENSG00000106477|Q9BYV8-2|CEP41;ENSG00000106477|ENST00000223208|CEP41;nc|ENSG00000106477|Q9BYV8-5|CEP41	nc|ENSG00000106477|Q9BYV8-2|CEP41	nc|ENSG00000106477|Q9BYV8-2|CEP41	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7884826660156	2	508.753995	1015.49344	2.0024	0.0010187	4.2074	0.0021405	6.2098	0.0031593	508.7560051240291	96.774	0.5924	96.774	96.543	97.135	0					27	13	3	0	0	0	0.028476	1	10598	10598		49.442	10.635	1	795040			7343	2555	5920	5929	8453	8453					-0.0136891232148173
EIQTSLDRL	9	Unmodified	_EIQTSLDRL_					0	0	0			REV__ENSG00000158023|ENST00000288912|CFAP251	REV__ENSG00000158023|ENST00000288912|CFAP251	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.7943725585938	2	537.793121	1073.57169	-1.8485	-0.0009941	2.9495	0.0015862	1.101	0.00059214	537.7942990683325	43.132	1.3457	40.125	39.643	40.989	-3.0074					42	25	3	0	0	0	0.51865	1	2055	2055		40.778	1.5253	1	279890	+		7344	20545	5921	5930	8454	8454					0.03784520263752711
EIQVVLVEN	9	Unmodified	_EIQVVLVEN_					0	0	0		ENST00000541086.5_1_14:103389974-103397014:+|nuORF;ENSG00000166126|ENST00000299155|AMN;ENST00000558590.1_1_14:103395319-103397951:+|nuORF	ENST00000541086.5_1_14:103389974-103397014:+|nuORF	ENST00000541086.5_1_14:103389974-103397014:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	521.794189453125	2	521.792589	1041.57063	-0.46623	-0.00024328	0.013561	7.0763E-06	-0.45267	-0.0002362	521.7934359239622	70.713	0.97998	70.713	70.17	71.15	0					50	24	3	0	0	0	0.44248	1	6776	6776		47.96	1.9873	1	6168300			7345	6639	5922	5931	8455	8455					0.051503058948810576
EIRELPLL	8	Unmodified	_EIRELPLL_					0	0	0		ENSG00000184571|ENST00000616349|PIWIL3;nc|ENSG00000184571|Q7Z3Z3|PIWIL3	ENSG00000184571|ENST00000616349|PIWIL3	ENSG00000184571|ENST00000616349|PIWIL3	MULTI-MSMS	OvCa9_classI_Rep2	2	491.7994384765625	2	491.800217	981.585882	0.45767	0.00022508	-0.86132	-0.0004236	-0.40365	-0.00019852	491.7997614216502	106.26	3.1068	105.82	105.5	108.61	-0.43642					130	62	3	0	0	0	0.58851	1	9953	9953		66.429	7.6473	1	1827600			7346	8171	5923	5932	8456	8456					0.09435217482723601
EIRELPLL	8	Unmodified	_EIRELPLL_					0	0	0		ENSG00000184571|ENST00000616349|PIWIL3;nc|ENSG00000184571|Q7Z3Z3|PIWIL3	ENSG00000184571|ENST00000616349|PIWIL3	ENSG00000184571|ENST00000616349|PIWIL3	MULTI-MSMS	OvCa9_classI_Rep3	3	491.80096435546875	2	491.800217	981.585882	0.015139	7.4454E-06	-0.71075	-0.00034955	-0.69561	-0.0003421	491.79978875845774	107.24	3.4509	105.98	105.67	109.12	-1.267					161	66	5	0	0	0	0.53252	1	7630	7630		74.255	5.4682	1	2343100			7347	8171	5923	5932	8457	8457					0.09435217482723601
EIREMIDDDIY	11	Unmodified	_EIREMIDDDIY_					0	0	0			REV__tr|A0A7D6W359|A0A7D6W359_9CLOTOrotatephosphoribosyltransferaseOS=ClostridiumintestinaleOX=36845GN=pyrEPE=3SV=1	REV__tr|A0A7D6W359|A0A7D6W359_9CLOTOrotatephosphoribosyltransferaseOS=ClostridiumintestinaleOX=36845GN=pyrEPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.7879943847656	3	471.218508	1410.6337	-0.26567	-0.00012519	-1.7089	-0.00080526	-1.9746	-0.00093045	471.21777312114534	41.822	0.71614	38.841	38.645	39.361	-2.9804					22	13	3	0	0	0	0.026174	1	1876	1876		22.562	5.3948	1	38222	+		7348	31909	5924	5933	8458	8458					-0.055195411700651675
EIRKIQTTT	9	Unmodified	_EIRKIQTTT_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA;NBEA|p.N1381Ffs*28|1|0.43|ENSG00000172915|chr13:35164414-35164430|CATAACACAATTCACCT/-|frameshift_variant	ENSG00000172915|ENST00000379939|NBEA	ENSG00000172915|ENST00000379939|NBEA	MULTI-MSMS	OvCa9_classI_Rep3	3	545.31689453125	2	545.316763	1088.61897	-2.8527	-0.0015556	2.7212	0.0014839	-0.13151	-7.1714E-05	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.55588	1	11766	11766		37.159	8.0096	1	337600			7349	7329	5925	5934	8459	8459					0.07820799534761136
EIRKKHKIRHN	11	Unmodified	_EIRKKHKIRHN_					0	0	0		tr|A0A7D6VTY0|A0A7D6VTY0_9CLOTAminoacidadenylationdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18690PE=4SV=1	tr|A0A7D6VTY0|A0A7D6VTY0_9CLOTAminoacidadenylationdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18690PE=4SV=1	tr|A0A7D6VTY0|A0A7D6VTY0_9CLOTAminoacidadenylationdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18690PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.9587097167969	3	486.963659	1457.86915	-7.2824	-0.0035463	-2.4216	-0.0011792	-9.704	-0.0047255	486.9623381995862	161.08	3.4384	159.71	158.52	161.96	-1.3692					219	70	4	0	0	0	0.72524	1	13937	13937		12.433	2.3289	1	133400			7350	35150	5926	5935	8460	8460					0.15852821650901205
EIRLLLFCK	9	Unmodified	_EIRLLLFCK_					0	0	0			REV__ENST00000371564.7_1_20:50004293-50004545:-|nuORF	REV__ENST00000371564.7_1_20:50004293-50004545:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	567.806396484375	2	567.83882	1133.66309	-1.0112	-0.00057417	-1.1348	-0.00064441	-2.146	-0.0012186	567.8382197783224	69.065	0.74752	66.444	66.068	66.815	-2.6203					26	14	3	0	0	0	0.027462	1	5481	5481		14.137	0	1	41984	+		7351	24984	5927	5936	8461	8461					0.10160112427388412
EIRNKTVV	8	Unmodified	_EIRNKTVV_					0	0	0		ENST00000486433.5_1_12:56865273-56869736:-|nuORF;ENSG00000135423|ENST00000311966|GLS2	ENST00000486433.5_1_12:56865273-56869736:-|nuORF	ENST00000486433.5_1_12:56865273-56869736:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	479.7859802246094	2	479.787641	957.56073	-2.7309	-0.0013103	2.326	0.001116	-0.40495	-0.00019429	479.7886280773358	36.925	0.73951	34.216	34.09	34.83	-2.7097					26	14	3	0	0	0	0.73205	1	1618	1618		35.618	2.8059	1	115520			7352	4376	5928	5937	8462	8462					0.08025162680155518
EIRNLVLQT	9	Unmodified	_EIRNLVLQT_					0	0	0		tr|A0A553SIU3|A0A553SIU3_NIACISignaltransductionhistidine-proteinkinase/phosphataseDegSOS=NialliacirculansOX=1397GN=CEQ21_15530PE=4SV=1	tr|A0A553SIU3|A0A553SIU3_NIACISignaltransductionhistidine-proteinkinase/phosphataseDegSOS=NialliacirculansOX=1397GN=CEQ21_15530PE=4SV=1	tr|A0A553SIU3|A0A553SIU3_NIACISignaltransductionhistidine-proteinkinase/phosphataseDegSOS=NialliacirculansOX=1397GN=CEQ21_15530PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.2852172851562	2	543.319306	1084.62406	-0.89986	-0.00048891	-0.0096606	-5.2488E-06	-0.90952	-0.00049416	543.3188758876937	104.58	0.41988	104.58	104.32	104.74	0					17	9	2	0	0	0	0.027462	1	11740	11740		19.104	0	1	682730			7353	33424	5929	5938	8463	8463					0.08513103397376653
EIRNQFAK	8	Unmodified	_EIRNQFAK_					0	0	0		tr|A0A553SJA2|A0A553SJA2_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16385PE=4SV=1	tr|A0A553SJA2|A0A553SJA2_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16385PE=4SV=1	tr|A0A553SJA2|A0A553SJA2_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16385PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.75726318359375	2	503.277441	1004.54033	-0.48312	-0.00024314	-0.36771	-0.00018506	-0.85084	-0.00042821	503.277254065296	48.219	0.42838	48.219	47.984	48.412	0					19	9	3	0	0	0	0.028476	1	3541	3541		23.042	0	1	343460			7354	33481	5930	5939	8464	8464					0.038239920203295696
EIRNVVLI	8	Unmodified	_EIRNVVLI_					0	0	0			REV__tr|A0A7D7A4D7|A0A7D7A4D7_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02640PE=3SV=1	REV__tr|A0A7D7A4D7|A0A7D7A4D7_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02640PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.7931213378906	2	478.300384	954.586216	0.35526	0.00016992	-0.061438	-2.9386E-05	0.29382	0.00014053	478.3001772933099	103.39	0.50412	103.39	103.18	103.69	0					18	11	2	0	0	0	0.028476	1	11544	11544		25.45	1.2474	1	374320	+		7355	32604	5931	5940	8465	8465					0.10710637202578255
EIRPRAGLRA	10	Unmodified	_EIRPRAGLRA_					0	0	0			REV__ENST00000360647.8_1_3:125050018-125093983:-|nuORF	REV__ENST00000360647.8_1_3:125050018-125093983:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	569.8457641601562	2	569.843813	1137.67307	0.70877	0.00040389	2.7341	0.001558	3.4428	0.0019619	569.8452383624614	66.591	2.2644	63.645	63.265	65.53	-2.9459					89	44	4	0	0	0	0.73378	1	2754	2754		26.693	3.6504	1	226750	+		7356	24837	5932	5941	8466	8466					0.10974436476999472
EIRRREKS	8	Unmodified	_EIRRREKS_					0	0	0		ENST00000328668.7_1_5:149682265-149682355:-|nuORF	ENST00000328668.7_1_5:149682265-149682355:-|nuORF	ENST00000328668.7_1_5:149682265-149682355:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.2960815429688	2	537.312346	1072.61014	-0.86285	-0.00046362	3.4617	0.00186	2.5989	0.0013964	537.3136522211867	62	1.0592	58.543	58.151	59.21	-3.4577					45	21	3	0	0	0	0.028476	1	4316	4316		27.882	2.3082	1	84772			7357	10424	5933	5942	8467	8467					0.07673870688950046
EIRTIKYDTE	10	Unmodified	_EIRTIKYDTE_					0	0	0		tr|A0A7D7A190|A0A7D7A190_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15655PE=4SV=1	tr|A0A7D7A190|A0A7D7A190_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15655PE=4SV=1	tr|A0A7D7A190|A0A7D7A190_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15655PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	422.574462890625	3	423.22247	1266.64558	-0.44966	-0.00019031	-1.1809	-0.00049977	-1.6305	-0.00069008	423.2212362272383	37.613	0.22936	37.613	37.438	37.668	0					5	4	2	0	0	0	0.026856	1	2060	2060		16.53	0	1	16346			7358	36029	5934	5943	8468	8468					0.022924436354287536
EIRVLQIEG	9	Unmodified	_EIRVLQIEG_					0	0	0			REV__nc|ENSG00000012779|P09917-5|ALOX5	REV__nc|ENSG00000012779|P09917-5|ALOX5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.2854614257812	2	528.806031	1055.59751	0.093042	4.9201E-05	-1.9772	-0.0010456	-1.8842	-0.00099636	528.8054785481963	68.155	0.7341	64.665	64.478	65.212	-3.4902					20	14	2	0	0	0	0.027462	1	5087	5087		29.17	14.305	1	93609	+		7359	16498	5935	5944	8469	8469					0.07193414506059526
EIRWVEVK	8	Unmodified	_EIRWVEVK_					0	0	0			REV__ENST00000548843.1_1_12:58200052-58208006:-|nuORF	REV__ENST00000548843.1_1_12:58200052-58208006:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7850341796875	2	529.803291	1057.59203	-0.69524	-0.00036834	3.263	0.0017287	2.5677	0.0013604	529.8048647904756	68.216	0.73274	68.216	67.916	68.649	0					36	17	3	0	0	0	0.028476	1	6428	6428		93.195	0	1	2958300	+		7360	19285	5936	5945	8470	8470					0.06553735714237519
EIRYQEETI	9	Unmodified	_EIRYQEETI_					0	0	0			REV__ENSG00000135976|ENST00000420699|ANKRD36	REV__ENSG00000135976|ENST00000420699|ANKRD36	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.8095092773438	2	590.79586	1179.57717	-0.097535	-5.7623E-05	0.78895	0.00046611	0.69141	0.00040848	590.7959456678748	71.533	0.52814	71.533	71.349	71.877	0					28	12	3	0	0	0	0.02744	1	6914	6914		36.447	0	1	1585400	+		7361	19345	5937	5946	8471	8471					-0.005438009444333147
EISAKHQV	8	Unmodified	_EISAKHQV_					0	0	0		tr|A0A553SIJ6|A0A553SIJ6_NIACIPhzFfamilyphenazinebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_14980PE=4SV=1	tr|A0A553SIJ6|A0A553SIJ6_NIACIPhzFfamilyphenazinebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_14980PE=4SV=1	tr|A0A553SIJ6|A0A553SIJ6_NIACIPhzFfamilyphenazinebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_14980PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	456.2520751953125	2	456.250892	910.48723	0.89965	0.00041047	-1.0175	-0.00046422	-0.11781	-5.3751E-05	456.2503173432753	66.907	0.51212	66.907	66.661	67.173	0					26	12	3	0	0	0	0.64371	1	6234	6234		54.776	1.8396	1	1609000			7362	33388	5938	5947	8472	8472					0.02840614237675254
EISAKHQV	8	Unmodified	_EISAKHQV_					0	0	0		tr|A0A553SIJ6|A0A553SIJ6_NIACIPhzFfamilyphenazinebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_14980PE=4SV=1	tr|A0A553SIJ6|A0A553SIJ6_NIACIPhzFfamilyphenazinebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_14980PE=4SV=1	tr|A0A553SIJ6|A0A553SIJ6_NIACIPhzFfamilyphenazinebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_14980PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	456.250892	910.48723	0.57917	0.00026425	-0.12208	-5.5698E-05	0.4571	0.00020855	456.250649703005	69.36	1.1463	66.74	66.266	67.413	-2.6203	-0.030223	-2.6756E-05	NaN	54.776	41	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66627			7363	33388	5938	5947							0.02840614237675254
EISAKHQV	8	Unmodified	_EISAKHQV_					0	0	0		tr|A0A553SIJ6|A0A553SIJ6_NIACIPhzFfamilyphenazinebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_14980PE=4SV=1	tr|A0A553SIJ6|A0A553SIJ6_NIACIPhzFfamilyphenazinebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_14980PE=4SV=1	tr|A0A553SIJ6|A0A553SIJ6_NIACIPhzFfamilyphenazinebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_14980PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	456.250892	910.48723	-0.52662	-0.00024027	0.6726	0.00030688	0.14598	6.6605E-05	456.2510775309147	70.145	1.1616	66.663	66.442	67.603	-3.4812	-0.1069	0.00069839	NaN	54.776	52	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	264570			7364	33388	5938	5947							0.02840614237675254
EISASEVLTL	10	Unmodified	_EISASEVLTL_					0	0	0			REV__tr|A0A7D6VUX0|A0A7D6VUX0_9CLOTEndosporegerminationpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03220PE=3SV=1	REV__tr|A0A7D6VUX0|A0A7D6VUX0_9CLOTEndosporegerminationpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03220PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.8148803710938	2	531.289879	1060.56521	2.2235	0.0011813	0.4606	0.00024471	2.6841	0.001426	531.2899468360213	113.03	0.627	113.03	112.79	113.42	0					29	13	3	0	0	0	0.026606	1	12869	12869		62.107	5.3864	1	727800	+		7365	31697	5939	5948	8473	8473					0.037345823123814625
EISCSMVVLL	10	Unmodified	_EISCSMVVLL_					0	0	0		ENST00000518857.5_1_8:104081005-104081197:+|nuORF	ENST00000518857.5_1_8:104081005-104081197:+|nuORF	ENST00000518857.5_1_8:104081005-104081197:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.7709350585938	2	547.285228	1092.5559	1.9851	0.0010864	4.2437	0.0023225	6.2288	0.0034089	547.2875089944697	76.846	0.56796	76.846	76.6	77.168	0					25	13	2	0	0	0	0.026665	1	7758	7758		51.335	13.827	1	700050			7366	13075	5940	5949	8474	8474					0.013327744308753608
EISHYQIL	8	Unmodified	_EISHYQIL_					0	0	0			REV__ENST00000508215.1_1_5:110842026-110848199:-|nuORF	REV__ENST00000508215.1_1_5:110842026-110848199:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.2828369140625	2	501.766374	1001.5182	-0.16228	-8.1427E-05	-2.93	-0.0014702	-3.0923	-0.0015516	501.7649734236834	51.217	0.68483	51.217	50.819	51.504	0					41	15	4	0	0	0	0.028476	1	3943	3943		20.482	1.1219	1	518890	+		7367	20960	5941	5950	8475	8475					0.01749767551905279
EISIDVLSVI	10	Unmodified	_EISIDVLSVI_					0	0	0		tr|A0A553SPP7|A0A553SPP7_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_26750PE=3SV=1	tr|A0A553SPP7|A0A553SPP7_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_26750PE=3SV=1	tr|A0A553SPP7|A0A553SPP7_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_26750PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.8148803710938	2	544.315897	1086.61724	1.9802	0.0010778	-0.15484	-8.428E-05	1.8253	0.00099356	544.3156985654117	91.958	0.84528	91.958	91.582	92.428	0					27	19	2	0	0	0	0.026752	1	9965	9965		53.351	7.3792	1	2016000			7368	34067	5942	5951	8476	8476					0.07739745726144065
EISIVGLGIL	10	Unmodified	_EISIVGLGIL_					0	0	0			REV__ENSG00000131183|ENST00000324417|SLC34A1	REV__ENSG00000131183|ENST00000324417|SLC34A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.29522705078125	2	507.3157	1012.61685	0.1723	8.7409E-05	2.2665	0.0011499	2.4388	0.0012373	507.3165973830159	114.45	1.193	114.45	114.06	115.25	0					57	25	4	0	0	0	0.026752	1	13068	13068		53.351	22.848	1	816440	+		7369	19002	5943	5952	8477	8477					0.11104370796954299
EISKAQEEI	9	Unmodified	_EISKAQEEI_					0	0	0		ENST00000527849.5_1_1:146647950-146672902:-|nuORF;nc|ENSG00000131781|P49326-3|FMO5;ENSG00000131781|ENST00000254090|FMO5	ENST00000527849.5_1_1:146647950-146672902:-|nuORF	ENST00000527849.5_1_1:146647950-146672902:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	523.7730712890625	2	523.771854	1045.52915	-0.76133	-0.00039876	0.3494	0.00018301	-0.41193	-0.00021576	523.7721998213259	55.911	0.6211	55.911	55.599	56.22	0					39	14	4	0	0	0	0.34132	1	4614	4614		58.23	0	1	2011400			7370	4090	5944	5953	8478	8478					0.008211251355305649
EISKKLIDV	9	Unmodified	_EISKKLIDV_					0	0	0		tr|A0A7D7A2X7|A0A7D7A2X7_9CLOTMethionineaminopeptidaseOS=ClostridiumintestinaleOX=36845GN=mapPE=3SV=1	tr|A0A7D7A2X7|A0A7D7A2X7_9CLOTMethionineaminopeptidaseOS=ClostridiumintestinaleOX=36845GN=mapPE=3SV=1	tr|A0A7D7A2X7|A0A7D7A2X7_9CLOTMethionineaminopeptidaseOS=ClostridiumintestinaleOX=36845GN=mapPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	523.8092651367188	2	522.818607	1043.62266	-0.083393	-4.36E-05	-1.2245	-0.00064021	-1.3079	-0.00068381	522.8184471699889	79.118	0.64729	76.778	76.61	77.257	-2.3399					19	12	2	0	0	0	0.027462	1	4250	4250		20.947	0	1	26486			7371	36095	5945	5954	8479	8479					0.10259469308630287
EISKLARATT	10	Unmodified	_EISKLARATT_					0	0	0			REV__tr|A0A553SNR2|A0A553SNR2_NIACIDUF1593domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_25025PE=4SV=1	REV__tr|A0A553SNR2|A0A553SNR2_NIACIDUF1593domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_25025PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3162231445312	2	545.316763	1088.61897	-2.8527	-0.0015556	2.7212	0.0014839	-0.13151	-7.1714E-05	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.69073	1	11748	11748		31.53	7.0106	1	337600	+		7372	30442	5946	5955	8480	8480					0.07820799534761136
EISLLNGVSL	10	Unmodified	_EISLLNGVSL_					0	0	0		ENSG00000103064|ENST00000219343|SLC7A6	ENSG00000103064|ENST00000219343|SLC7A6	ENSG00000103064|ENST00000219343|SLC7A6	MULTI-MSMS	OvCa9_classI_Rep2	2	522.8004150390625	2	522.800414	1043.58628	-0.87788	-0.00045896	0.96564	0.00050484	0.087759	4.5881E-05	522.8007406580608	101.53	1.6335	100.76	100.32	101.95	-0.76401					80	32	4	0	0	0	0.26424	1	9331	9331		85.161	0	1	332930			7373	2280	5947	5956	8481	8481					0.06622592411918049
EISLLTLFVY	10	Unmodified	_EISLLTLFVY_					0	0	0		tr|A0A553SS13|A0A553SS13_NIACIBranched-chainaminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_02285PE=3SV=1	tr|A0A553SS13|A0A553SS13_NIACIBranched-chainaminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_02285PE=3SV=1	tr|A0A553SS13|A0A553SS13_NIACIBranched-chainaminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_02285PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	599.365966796875	2	599.341915	1196.66928	1.7581	0.0010537	-3.1841	-0.0019084	-1.4261	-0.00085471	599.3398921691866	127.3	0.66853	127.3	127.01	127.67	0					34	14	3	0	0	0	0.02649	1	14744	14744		71.296	2.5089	1	304580			7374	34321	5948	5957	8482	8482					0.07880909139930736
EISLRVFRVF	10	Unmodified	_EISLRVFRVF_					0	0	0			REV__tr|A0A7D6VWX1|A0A7D6VWX1_9CLOTPhosphatetransportsystempermeaseproteinPstAOS=ClostridiumintestinaleOX=36845GN=pstAPE=3SV=1	REV__tr|A0A7D6VWX1|A0A7D6VWX1_9CLOTPhosphatetransportsystempermeaseproteinPstAOS=ClostridiumintestinaleOX=36845GN=pstAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	633.36962890625	2	633.371872	1264.72919	-4.5141	-0.0028591	0.26314	0.00016666	-4.251	-0.0026925	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.71192	1	15547	15547		29.15	1.2673	1	369460	+		7375	31758	5949	5958	8483	8483					0.10741644593804267
EISMEILY	8	Unmodified	_EISMEILY_					0	0	0			REV__tr|A0A7D6VRZ6|A0A7D6VRZ6_9CLOTDNAhelicaseRecQOS=ClostridiumintestinaleOX=36845GN=recQPE=3SV=1	REV__tr|A0A7D6VRZ6|A0A7D6VRZ6_9CLOTDNAhelicaseRecQOS=ClostridiumintestinaleOX=36845GN=recQPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.8227233886719	2	499.249169	996.483784	1.497	0.0007474	-1.3185	-0.00065826	0.17855	8.9141E-05	499.2484260472964	98.484	0.39346	98.484	98.29	98.683	0					13	8	2	0	0	0	0.028476	1	10834	10834		19.36	0	1	140130	+		7376	31457	5950	5959	8484	8484					-0.014598166511973432
EISMLLNIL	9	Unmodified	_EISMLLNIL_					0	0	0			REV__nc|ENSG00000082175|P06401-2|PGR	REV__nc|ENSG00000082175|P06401-2|PGR	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3023681640625	2	523.301736	1044.58892	-0.69596	-0.0003642	4.2173	0.0022069	3.5214	0.0018427	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.53957	1	13864	13864		38.806	8.3025	1	130240	+		7377	17082	5951	5960	8485	8485					0.06840724545213561
EISNFDYLI	9	Unmodified	_EISNFDYLI_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.8046875	2	557.276772	1112.53899	0.085976	4.7912E-05	-2.4833	-0.0013839	-2.3973	-0.0013359	557.2749654808586	56.325	0.361	56.325	56.22	56.581	0					10	8	2	0	0	0	0.027462	1	4655	4655		23.042	0	1	248630			7378	5150	5952	5961	8486	8486					-0.012776868590890444
EISNGTVKSR	10	Unmodified	_EISNGTVKSR_					0	0	0		tr|A0A7D6ZQA0|A0A7D6ZQA0_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_23505PE=3SV=1	tr|A0A7D6ZQA0|A0A7D6ZQA0_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_23505PE=3SV=1	tr|A0A7D6ZQA0|A0A7D6ZQA0_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_23505PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.2567138671875	2	545.796195	1089.57784	1.2827	0.00070012	4.42	0.0024124	5.7028	0.0031125	545.7986296824612	93.568	0.9147	93.568	92.926	93.841	0					45	21	4	0	0	0	0.026548	1	10163	10163		38.754	0	1	3164400			7379	35700	5953	5962	8487	8487					0.0366303849527867
EISNGTVKSR	10	Unmodified	_EISNGTVKSR_					0	0	0		tr|A0A7D6ZQA0|A0A7D6ZQA0_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_23505PE=3SV=1	tr|A0A7D6ZQA0|A0A7D6ZQA0_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_23505PE=3SV=1	tr|A0A7D6ZQA0|A0A7D6ZQA0_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_23505PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	545.796195	1089.57784	-0.52013	-0.00028388	2.8506	0.0015559	2.3305	0.001272	545.7982670105051	94.767	0.58804	93.668	93.263	93.851	-1.0995	0.015372	-0.0014709	NaN	46.457	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27012			7380	35700	5953	5962							0.0366303849527867
EISNGTVKSR	10	Unmodified	_EISNGTVKSR_					0	0	0		tr|A0A7D6ZQA0|A0A7D6ZQA0_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_23505PE=3SV=1	tr|A0A7D6ZQA0|A0A7D6ZQA0_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_23505PE=3SV=1	tr|A0A7D6ZQA0|A0A7D6ZQA0_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_23505PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	545.796195	1089.57784	-0.93202	-0.00050869	3.5372	0.0019306	2.6052	0.0014219	545.7983228636728	95.535	0.6526	93.639	93.161	93.813	-1.8956	-0.013247	-0.00072145	NaN	46.457	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46739			7381	35700	5953	5962							0.0366303849527867
EISNGTVKSR	10	Unmodified	_EISNGTVKSR_					0	0	0		tr|A0A7D6ZQA0|A0A7D6ZQA0_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_23505PE=3SV=1	tr|A0A7D6ZQA0|A0A7D6ZQA0_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_23505PE=3SV=1	tr|A0A7D6ZQA0|A0A7D6ZQA0_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_23505PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	545.796195	1089.57784	-0.79457	-0.00043367	2.7924	0.0015241	1.9979	0.0010904	545.7980602086193	96.16	0.50658	93.734	93.355	93.862	-2.4256	0.081893	-0.0015344	NaN	46.457	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28172			7382	35700	5953	5962							0.0366303849527867
EISPDIAVL	9	Unmodified	_EISPDIAVL_					0	0	0		tr|A0A7D6VPL8|A0A7D6VPL8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_23525PE=4SV=1	tr|A0A7D6VPL8|A0A7D6VPL8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_23525PE=4SV=1	tr|A0A7D6VPL8|A0A7D6VPL8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_23525PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	478.76995849609375	2	478.768583	955.522613	2.2987	0.0011005	-0.4941	-0.00023656	1.8046	0.00086398	478.7684646201261	137.23	0.43381	137.23	137.01	137.45	0					13	8	2	0	0	0	0.44294	1	16011	16011		47.916	5.5195	1	71365			7383	34780	5954	5963	8488	8488					0.04307231974826209
EISPFFKT	8	Unmodified	_EISPFFKT_					0	0	0		ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.77813720703125	2	484.758018	967.501483	-0.24946	-0.00012093	0.82977	0.00040224	0.58031	0.00028131	484.7583875931178	42.936	0.34765	42.936	42.709	43.057	0					12	7	2	0	0	0	0.028476	1	2810	2810		21.96	0	1	157790			7384	1751	5955	5964	8489	8489					0.016432666659625284
EISPHLKEP	9	Unmodified	_EISPHLKEP_					0	0	0		ENSG00000105429|ENST00000251268|MEGF8;nc|ENSG00000105429|Q7Z7M0-2|MEGF8;MEGF8|p.R1953Pfs*3|1|0.11|ENSG00000105429|chr19:42362390-42362391|-/C|frameshift_variant	ENSG00000105429|ENST00000251268|MEGF8	ENSG00000105429|ENST00000251268|MEGF8	MULTI-MSMS	OvCa9_classI_Rep3	3	526.285400390625	2	525.284931	1048.55531	-0.52192	-0.00027415	-0.086001	-4.5175E-05	-0.60792	-0.00031933	525.2848982861796	114.53	2.2405	113.48	112.84	115.08	-1.055					123	44	4	0	0	0	0.42676	1	8438	8438		49.442	3.4693	1	908300			7385	2459	5956	5965	8490	8490					0.03297439097673305
EISYGERFQ	9	Unmodified	_EISYGERFQ_					0	0	0			REV__tr|A0A553SFT7|A0A553SFT7_NIACIRecombinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09505PE=4SV=1	REV__tr|A0A553SFT7|A0A553SFT7_NIACIRecombinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09505PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	564.8057861328125	2	564.769645	1127.52474	-0.18718	-0.00010572	0.24684	0.00013941	0.059658	3.3693E-05	564.7695242022961	93.952	0.96613	92.852	92.592	93.558	-1.0995					29	18	2	0	0	0	0.027462	1	8473	8473		23.042	0	1	35180	+		7386	29622	5957	5966	8491	8491					-0.03392339287370305
EITANDPNIIV	11	Unmodified	_EITANDPNIIV_					0	0	0			REV__tr|A0A7D6VQH6|A0A7D6VQH6_9CLOTPhosphoenolpyruvate-proteinphosphotransferaseOS=ClostridiumintestinaleOX=36845GN=ptsPPE=3SV=1	REV__tr|A0A7D6VQH6|A0A7D6VQH6_9CLOTPhosphoenolpyruvate-proteinphosphotransferaseOS=ClostridiumintestinaleOX=36845GN=ptsPPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	600.3187255859375	2	599.819335	1197.62412	2.2427	0.0013452	-3.6309	-0.0021779	-1.3882	-0.00083268	599.817043050596	106.72	1.2995	105.45	105.06	106.36	-1.267					54	25	4	0	0	0	0.02523	1	7639	7639		38.754	22.28	1	366130	+		7387	31327	5958	5967	8492	8492					0.033210586067070835
EITARGVTAI	10	Unmodified	_EITARGVTAI_					0	0	0		chr1:155951530-155951741|91|18.42|0.62|4.9|-|2|None,ARHGEF2|1	chr1:155951530-155951741|91|18.42|0.62|4.9|-|2|None,ARHGEF2|1	chr1:155951530-155951741|91|18.42|0.62|4.9|-|2|None,ARHGEF2|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.7391357421875	2	515.798206	1029.58186	1.4934	0.00077028	0.035982	1.856E-05	1.5294	0.00078884	515.7983034779226	80.806	0.50771	80.806	80.529	81.037	0					17	11	2	0	0	0	0.026551	1	8267	8267		69.628	6.3214	1	639610			7388	245	5959	5968	8493	8493					0.06825127989009161
EITARGVTAI	10	Unmodified	_EITARGVTAI_					0	0	0		chr1:155951530-155951741|91|18.42|0.62|4.9|-|2|None,ARHGEF2|1	chr1:155951530-155951741|91|18.42|0.62|4.9|-|2|None,ARHGEF2|1	chr1:155951530-155951741|91|18.42|0.62|4.9|-|2|None,ARHGEF2|1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	515.798206	1029.58186	-0.433	-0.00022334	-0.10088	-5.2034E-05	-0.53388	-0.00027538	515.7981243331252	83.001	0.89021	80.705	80.332	81.222	-2.2963	-0.083824	0.0006059	NaN	69.628	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230020			7389	245	5959	5968							0.06825127989009161
EITDIKKSI	9	Unmodified	_EITDIKKSI_					0	0	0			REV__tr|A0A553SNL3|A0A553SNL3_NIACIMagnesiumtransporterCorAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_24755PE=3SV=1	REV__tr|A0A553SNL3|A0A553SNL3_NIACIMagnesiumtransporterCorAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_24755PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	524.8059692382812	2	523.808239	1045.60193	-1.651	-0.0008648	2.9179	0.0015284	1.2669	0.00066363	523.8101109573394	92.822	0.67632	90.86	90.652	91.328	-1.9617					16	13	2	0	0	0	0.027426	1	5939	5939		31.53	5.9558	1	33635	+		7390	30430	5960	5969	8494	8494					0.0809487892895504
EITFPHSEIS	10	Unmodified	_EITFPHSEIS_					0	0	0		nc|ENSG00000180592|Q1XH10-2|SKIDA1;ENSG00000180592|ENST00000449193|SKIDA1	nc|ENSG00000180592|Q1XH10-2|SKIDA1	nc|ENSG00000180592|Q1XH10-2|SKIDA1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	580.3056640625	2	580.285128	1158.5557	-1.0886	-0.00063171	0.30004	0.00017411	-0.78857	-0.0004576	580.2853199620996	101.55	0.7044	99.28	99.113	99.817	-2.2665					19	13	2	0	0	0	0.026849	1	9101	9101		32.812	7.2384	1	47131			7391	7879	5961	5970	8495	8495					-0.017231859731282384
EITFRTNIV	9	Unmodified	_EITFRTNIV_					0	0	0			REV__tr|A0A553SHE4|A0A553SHE4_NIACITranscriptionalregulatorCtsROS=NialliacirculansOX=1397GN=CEQ21_12655PE=3SV=1	REV__tr|A0A553SHE4|A0A553SHE4_NIACITranscriptionalregulatorCtsROS=NialliacirculansOX=1397GN=CEQ21_12655PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	546.32763671875	2	546.806031	1091.59751	-0.05987	-3.2737E-05	0.097505	5.3316E-05	0.037635	2.0579E-05	546.805993050803	105.03	1.4582	103.68	103.36	104.82	-1.3482					48	27	2	0	0	0	0.027462	1	7398	7398		32.812	0	1	88648	+		7392	29794	5962	5971	8496	8496					0.05537414506011373
EITKGLNLP	9	Unmodified	_EITKGLNLP_					0	0	0		ENSG00000116017|ENST00000263620|ARID3A;ENST00000448213.2_1_1:81967523-81968357:+|nuORF;nc|ENSG00000179361|Q8IVW6-3|ARID3B;ENSG00000179361|ENST00000346246|ARID3B;nc|ENSG00000179361|Q8IVW6|ARID3B	ENSG00000116017|ENST00000263620|ARID3A;ENST00000448213.2_1_1:81967523-81968357:+|nuORF	ENSG00000116017|ENST00000263620|ARID3A	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3246154785156	2	492.78985	983.565146	-0.21173	-0.00010434	0.5573	0.00027463	0.34557	0.00017029	492.78980072525815	80.295	1.322	77.955	77.463	78.785	-2.3399					60	25	4	0	0	0	0.027232	1	4376	4376		76.774	10.345	1	335430			7393	3150;7817	5963	5972	8497	8497					0.07270627103048355
EITLIDDVL	9	Unmodified	_EITLIDDVL_					0	0	0		tr|A0A553SJA9|A0A553SJA9_NIACIAlpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_16360PE=3SV=1	tr|A0A553SJA9|A0A553SJA9_NIACIAlpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_16360PE=3SV=1	tr|A0A553SJA9|A0A553SJA9_NIACIAlpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_16360PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.2736206054688	2	515.786973	1029.55939	-0.38281	-0.00019745	0.49697	0.00025633	0.11415	5.8879E-05	515.7871246008007	79.113	1.1903	76.361	76.038	77.228	-2.7514					54	24	4	0	0	0	0.027433	1	6508	6508		68.485	0	1	1499800			7394	33485	5964	5973	8498	8498					0.04579483800716844
EITLKHLEQF	10	Unmodified	_EITLKHLEQF_					0	0	0		nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1;nc|ENSG00000124406|Q9Y2Q0-2|ATP8A1;ENSG00000124406|ENST00000381668|ATP8A1	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	MULTI-SECPEP	OvCa9_classI_Rep2	2	629.8482666015625	2	629.34552	1256.67649	0.91911	0.00057844	-0.15831	-9.963E-05	0.7608	0.00047881	629.3454270011671	90.388	1.2704	89.086	88.83	90.1	-1.302					59	24	5	0	0	0	0.026849	1	8099	8099		25.574	0	1	264760			7395	3648	5965	5974	8499	8499					0.05841641740312298
EITNVLVTK	9	Unmodified	_EITNVLVTK_					0	0	0			REV__tr|A0A553SGL0|A0A553SGL0_NIACIMulti-TM2domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11070PE=4SV=1	REV__tr|A0A553SGL0|A0A553SGL0_NIACIMulti-TM2domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11070PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.7922058105469	2	508.802957	1015.59136	1.8642	0.00094853	-1.2635	-0.00064286	0.60076	0.00030567	508.80288472460967	87.565	0.50301	87.565	87.378	87.881	0					16	10	2	0	0	0	0.027455	1	9320	9320		59.931	22.119	1	268080	+		7396	29716	5966	5975	8500	8500					0.08418896274531562
EITVKGTLTI	10	Unmodified	_EITVKGTLTI_					0	0	0			REV__tr|A0A7D7ACH9|A0A7D7ACH9_9CLOTPolymer-formingcytoskeletalproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19215PE=4SV=1	REV__tr|A0A7D7ACH9|A0A7D7ACH9_9CLOTPolymer-formingcytoskeletalproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19215PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.2980346679688	2	537.823889	1073.63323	0.22874	0.00012302	0.17162	9.2301E-05	0.40036	0.00021532	537.8243031903481	77.628	0.65559	75.276	74.89	75.546	-2.3527					16	12	2	0	0	0	0.026577	1	4040	4040		58.23	0	1	17922	+		7397	32689	5967	5976	8501	8501					0.09935451963065134
EITYSKAF	8	Unmodified	_EITYSKAF_					0	0	0		tr|A0A7D6VXX9|A0A7D6VXX9_9CLOT1-deoxy-D-xylulose-5-phosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=dxsPE=3SV=1	tr|A0A7D6VXX9|A0A7D6VXX9_9CLOT1-deoxy-D-xylulose-5-phosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=dxsPE=3SV=1	tr|A0A7D6VXX9|A0A7D6VXX9_9CLOT1-deoxy-D-xylulose-5-phosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=dxsPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.21697998046875	2	479.74765	957.480748	-0.31133	-0.00014936	1.6737	0.00080294	1.3624	0.00065359	479.74828692054297	35.301	0.65611	35.301	34.957	35.614	0					32	13	3	0	0	0	0.028476	1	1765	1765		29.15	0	1	142070			7398	35306	5968	5977	8502	8502					0.0003067628629196406
EIVAVCDIN	9	Unmodified	_EIVAVCDIN_					0	0	0		tr|A0A553SPQ6|A0A553SPQ6_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_26820PE=4SV=1	tr|A0A553SPQ6|A0A553SPQ6_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_26820PE=4SV=1	tr|A0A553SPQ6|A0A553SPQ6_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_26820PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.2712707519531	2	488.244418	974.474282	1.44	0.0007031	0.4476	0.00021854	1.8876	0.00092163	488.2444221929951	81.714	0.48917	81.714	81.572	82.061	0					19	11	2	0	0	0	0.027462	1	8480	8480		20.947	0	1	640350			7399	34071	5969	5978	8503	8503					-0.013975849367398041
EIVAVPQKV	9	Unmodified	_EIVAVPQKV_					0	0	0			REV__ENST00000449048.2_1_9:131207010-131207196:+|nuORF	REV__ENST00000449048.2_1_9:131207010-131207196:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	491.8008117675781	2	491.800217	981.585882	-1.7475	-0.00085943	1.401	0.00068899	-0.34656	-0.00017044	491.80078103129136	107.83	3.5166	105.95	105.59	109.11	-1.8785					134	68	3	0	0	0	0.27001	1	9890	9890		66.429	0.53182	1	2385200	+		7400	25941	5970	5979	8504	8504					0.09435217482712233
EIVGGRRAR	9	Unmodified	_EIVGGRRAR_					0	0	0		ENSG00000197561|ENST00000263621|ELANE	ENSG00000197561|ENST00000263621|ELANE	ENSG00000197561|ENST00000263621|ELANE	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.32452392578125	2	507.301781	1012.58901	-0.13806	-7.0037E-05	1.8356	0.00093119	1.6975	0.00086115	507.3024796814511	64.496	0.45954	64.496	64.375	64.834	0					20	10	3	0	0	0	0.027462	1	5906	5906		34.173	1.3601	1	417040			7401	8722	5971	5980	8505	8505					0.08321905380091721
EIVKAAKAPVK	11	Unmodified	_EIVKAAKAPVK_					0	0	0		nc|ENSG00000124228|Q96GQ7|DDX27;DDX27|p.E703Dfs*18|1|0.04|ENSG00000124228|chr20:49242105-49242106|-/TTTGCAGCCCGTGGCTTCCTGTGTT|frameshift_variant;ENSG00000124228|ENST00000618172|DDX27;ENST00000471144.1_1_20:47852884-47860241:+|nuORF;ENST00000484427.5_1_20:47852594-47860368:+|nuORF	nc|ENSG00000124228|Q96GQ7|DDX27	nc|ENSG00000124228|Q96GQ7|DDX27	MULTI-MSMS	OvCa9_classI_Rep2	2	577.36767578125	2	577.368798	1152.72304	-5.5665	-0.0032139	2.1457	0.0012388	-3.4208	-0.0019751	577.369928690125	160.74	1.397	160.51	160.13	161.53	-0.22696					95	27	5	0	0	0	0.68399	1	16376	16376		35.152	7.2698	1	1195800			7402	14999	5972	5981	8506	8506					0.15279126362247553
EIVKAAKAPVK	11	Unmodified	_EIVKAAKAPVK_					0	0	0		nc|ENSG00000124228|Q96GQ7|DDX27;DDX27|p.E703Dfs*18|1|0.04|ENSG00000124228|chr20:49242105-49242106|-/TTTGCAGCCCGTGGCTTCCTGTGTT|frameshift_variant;ENSG00000124228|ENST00000618172|DDX27;ENST00000471144.1_1_20:47852884-47860241:+|nuORF;ENST00000484427.5_1_20:47852594-47860368:+|nuORF	nc|ENSG00000124228|Q96GQ7|DDX27	nc|ENSG00000124228|Q96GQ7|DDX27	MULTI-MSMS	OvCa9_classI_Rep3	3	577.36669921875	2	577.368798	1152.72304	-7.5995	-0.0043877	4.078	0.0023545	-3.5215	-0.0020332	577.3709835310325	161.44	1.2472	160.07	159.69	160.93	-1.3692					76	25	4	0	0	0	0.72064	2	14039	14039;14051		22.58	1.689	1	379650			7403	14999	5972	5981	8507;8508	8507					0.15279126362247553
EIVKAAKAPVK	11	Unmodified	_EIVKAAKAPVK_					0	0	0		nc|ENSG00000124228|Q96GQ7|DDX27;DDX27|p.E703Dfs*18|1|0.04|ENSG00000124228|chr20:49242105-49242106|-/TTTGCAGCCCGTGGCTTCCTGTGTT|frameshift_variant;ENSG00000124228|ENST00000618172|DDX27;ENST00000471144.1_1_20:47852884-47860241:+|nuORF;ENST00000484427.5_1_20:47852594-47860368:+|nuORF	nc|ENSG00000124228|Q96GQ7|DDX27	nc|ENSG00000124228|Q96GQ7|DDX27	MULTI-MSMS	OvCa9_classI_Rep4_	4	577.3670043945312	2	577.368798	1152.72304	-6.9908	-0.0040363	3.1619	0.0018256	-3.8289	-0.0022107	577.3704843168063	161.9	1.6912	160.28	159.86	161.55	-1.6239					125	44	4	0	0	0	0.68757	2	16040	15986;16040		33.922	7.2287	1	1020600			7404	14999	5972	5981	8509;8510	8510					0.15279126362247553
EIVKEISTF	9	Unmodified	_EIVKEISTF_					0	0	0		ENST00000553854.1_1_14:82128143-82128728:+|nuORF	ENST00000553854.1_1_14:82128143-82128728:+|nuORF	ENST00000553854.1_1_14:82128143-82128728:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.2782592773438	2	533.294965	1064.57538	-0.69611	-0.00037123	0.32695	0.00017436	-0.36916	-0.00019687	533.7977304839033	51.972	0.29777	51.972	51.829	52.127	0					9	6	2	0	0	0	0.027462	1	4062	4062		26.693	0	1	68571			7405	13627	5973	5982	8511	8511					0.04567190037596447
EIVKFEPQV	9	Unmodified	_EIVKFEPQV_					0	0	0		ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	MULTI-MSMS	OvCa99_classI_Rep5	1	544.80615234375	2	544.802957	1087.59136	-1.4118	-0.00076918	0.79093	0.0004309	-0.62092	-0.00033828	544.8033383909151	104.39	0.50691	104.39	104.28	104.79	0					26	11	3	0	0	0	0.13326	1	11705	11705		88.177	0.4805	1	2462800			7406	935	5974	5983	8512	8512					0.05106896274514838
EIVKKLVEVR	10	Unmodified	_EIVKKLVEVR_					0	0	0			REV__tr|A0A7D7A441|A0A7D7A441_9CLOTNucleaseSbcCDsubunitDOS=ClostridiumintestinaleOX=36845GN=sbcDPE=3SV=1	REV__tr|A0A7D7A441|A0A7D7A441_9CLOTNucleaseSbcCDsubunitDOS=ClostridiumintestinaleOX=36845GN=sbcDPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.9158020019531	3	404.927329	1211.76016	1.3564	0.00054923	-3.9123	-0.0015842	-2.556	-0.001035	404.9252318334745	32.546	0.39303	32.546	32.403	32.796	0					12	7	2	0	0	0	0.027035	1	1444	1444		23.378	19.969	1	24585	+		7407	32601	5975	5984	8513	8513					0.16274797908022265
EIVKRSKLP	9	Unmodified	_EIVKRSKLP_					0	0	0			REV__ENSG00000129534|ENST00000310806|MIS18BP1	REV__ENSG00000129534|ENST00000310806|MIS18BP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.2586059570312	2	535.340041	1068.66553	-1.9139	-0.0010246	-1.2227	-0.00065454	-3.1366	-0.0016791	535.3391330484301	85.86	0.34677	84.369	84.146	84.493	-1.4906					10	6	2	0	0	0	0.027462	1	7453	7453		25.574	0	1	12465	+		7408	18902	5976	5985	8514	8514					0.1339428415672046
EIVLGLLVW	9	Unmodified	_EIVLGLLVW_					0	0	0		ENSG00000170293|ENST00000307526|CMTM8	ENSG00000170293|ENST00000307526|CMTM8	ENSG00000170293|ENST00000307526|CMTM8	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.3060913085938	2	521.320786	1040.62702	2.0843	0.0010866	2.6262	0.0013691	4.7105	0.0024557	521.3218155177664	89.716	0.44521	88.414	88.235	88.68	-1.302					11	8	2	0	0	0	0.027462	1	7887	7887		37.028	24.069	1	8424.7			7409	7091	5977	5986	8515	8515					0.10832978522171288
EIVLPPLADA	10	Unmodified	_EIVLPPLADA_					0	0	0		ENST00000320017.10_1_3:47459280-47460886:-|nuORF;ENST00000265565.9_1_3:47459280-47460886:-|nuORF	ENST00000320017.10_1_3:47459280-47460886:-|nuORF	ENST00000320017.10_1_3:47459280-47460886:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.7759399414062	2	519.297507	1036.58046	0.41975	0.00021797	-1.7025	-0.00088411	-1.2828	-0.00066614	519.2961493340808	96.328	1.4822	95.3	94.764	96.246	-1.0281					49	29	2	0	0	0	0.026994	1	8796	8796		19.104	4.4394	1	25454			7410	9952	5978	5987	8516	8516					0.06363493900221329
EIVLPPLADA	10	Unmodified	_EIVLPPLADA_					0	0	0		ENST00000320017.10_1_3:47459280-47460886:-|nuORF;ENST00000265565.9_1_3:47459280-47460886:-|nuORF	ENST00000320017.10_1_3:47459280-47460886:-|nuORF	ENST00000320017.10_1_3:47459280-47460886:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	519.297507	1036.58046	0.31514	0.00016365	-1.4977	-0.00077774	-1.1825	-0.00061409	519.2960481633847	97.54	1.1626	95.162	94.808	95.971	-2.3786	0.027333	-0.0012922	NaN	8.6937	38	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20641			7411	9952	5978	5987							0.06363493900221329
EIVMYMNN	8	Unmodified	_EIVMYMNN_					0	0	0		nc|ENSG00000174485|Q7Z401|DENND4A;nc|ENSG00000174485|Q7Z401-2|DENND4A;ENSG00000174485|ENST00000443035|DENND4A	nc|ENSG00000174485|Q7Z401|DENND4A	nc|ENSG00000174485|Q7Z401|DENND4A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.2211608886719	2	507.225171	1012.43579	0.32169	0.00016317	-1.6033	-0.00081324	-1.2816	-0.00065007	507.2245971761826	141.22	0.47003	139.75	139.5	139.97	-1.4627					10	8	2	0	0	0	0.028476	1	13791	13791		31.955	2.8053	1	7353.3			7412	7469	5979	5988	8517	8517					-0.06993213842906698
EIVNFVLLF	9	Unmodified	_EIVNFVLLF_					0	0	0		nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;ENST00000479736.1_1_13:98654746-98654878:+|nuORF	nc|ENSG00000065150|O00410-2|IPO5	nc|ENSG00000065150|O00410-2|IPO5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.3206787109375	2	547.318243	1092.62193	-0.22389	-0.00012254	2.453	0.0013426	2.2291	0.00122	547.3192847772776	142.72	2.9904	141.27	139.94	142.93	-1.4427					84	57	2	0	0	0	0.027462	1	13824	13824		30.504	13.139	1	30315			7413	1316	5980	5989	8518	8518					0.07932674659582517
EIVPLQAEK	9	Unmodified	_EIVPLQAEK_					0	0	0			REV__ENSG00000122194|ENST00000308192|PLG	REV__ENSG00000122194|ENST00000308192|PLG	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.7938232421875	2	513.795132	1025.57571	-1.1766	-0.00060455	-2.1144	-0.0010864	-3.291	-0.0016909	513.7940966414773	42.73	1.1024	39.722	39.486	40.589	-3.0074					34	20	2	0	0	0	0.50149	1	2002	2002		42.396	0	1	351570	+		7414	18582	5981	5990	8519	8519					0.06394609757467151
EIVPLQAEK	9	Unmodified	_EIVPLQAEK_					0	0	0			REV__ENSG00000122194|ENST00000308192|PLG	REV__ENSG00000122194|ENST00000308192|PLG	MULTI-MATCH	OvCa9_classI_Rep2	2		2	513.795132	1025.57571	0.87728	0.00045074	-3.6929	-0.0018974	-2.8156	-0.0014467	513.7931789142516	42.686	0.88806	39.976	39.621	40.509	-2.7097	0.127	-0.00060466	NaN	42.396	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77794	+		7415	18582	5981	5990							0.06394609757467151
EIVPLQAEK	9	Unmodified	_EIVPLQAEK_					0	0	0			REV__ENSG00000122194|ENST00000308192|PLG	REV__ENSG00000122194|ENST00000308192|PLG	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	513.795132	1025.57571	-1.1766	-0.00060455	-2.1144	-0.0010864	-3.291	-0.0016909	513.7940966414773	42.73	1.1024	39.722	39.486	40.589	-3.0074	-0.127	0.0010174	NaN	42.396	34	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	351570	+		7416	18582	5981	5990							0.06394609757467151
EIVPNGITLTM	11	Unmodified	_EIVPNGITLTM_					0	0	0		ENST00000469172.5_1_10:70097616-70097877:+|nuORF;nc|ENSG00000096746|P31942-2|HNRNPH3;ENSG00000096746|ENST00000265866|HNRNPH3	ENST00000469172.5_1_10:70097616-70097877:+|nuORF	ENST00000469172.5_1_10:70097616-70097877:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	594.3226928710938	2	594.320657	1186.62676	1.7494	0.0010397	0.42466	0.00025239	2.1741	0.0012921	594.320885578215	138.2	1.4493	138.2	137.87	139.32	0					94	30	4	0	0	0	9.7775E-05	3	16131	16107;16131;16155		177.3	91.945	1	4328100			7417	1951	5982	5991	8520;8521;8522	8521					0.04091190739995909
EIVPNGITLTM	11	Oxidation (M)	_EIVPNGITLTM(Oxidation (M))_		EIVPNGITLTM(1)		EIVPNGITLTM(60)	0	0	1		ENST00000469172.5_1_10:70097616-70097877:+|nuORF;nc|ENSG00000096746|P31942-2|HNRNPH3;ENSG00000096746|ENST00000265866|HNRNPH3	ENST00000469172.5_1_10:70097616-70097877:+|nuORF	ENST00000469172.5_1_10:70097616-70097877:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	602.3190307617188	2	602.318114	1202.62167	-0.6504	-0.00039175	0.74587	0.00044925	0.095469	5.7503E-05	602.31842144611	118.69	1.2486	117.35	117	118.25	-1.3444					43	23	3	0	0	0	0.41656	1	11135	11135		59.931	13.959	1	108660			7418	1951	5982	5992	8523	8523		69			0.02846886877387078
EIVPNGITLTM	11	Oxidation (M)	_EIVPNGITLTM(Oxidation (M))_					0	0	1		ENST00000469172.5_1_10:70097616-70097877:+|nuORF;nc|ENSG00000096746|P31942-2|HNRNPH3;ENSG00000096746|ENST00000265866|HNRNPH3	ENST00000469172.5_1_10:70097616-70097877:+|nuORF	ENST00000469172.5_1_10:70097616-70097877:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	602.318114	1202.62167	-1.7435	-0.0010501	1.8108	0.0010907	0.067319	4.0547E-05	602.3189867612591	117.91	1.1426	117.77	117.34	118.48	-0.14755	0.25935	0.0013723	NaN	59.931	44	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69479			7419	1951	5982	5992				69			0.02846886877387078
EIVPNGITLTM	11	Oxidation (M)	_EIVPNGITLTM(Oxidation (M))_					0	0	1		ENST00000469172.5_1_10:70097616-70097877:+|nuORF;nc|ENSG00000096746|P31942-2|HNRNPH3;ENSG00000096746|ENST00000265866|HNRNPH3	ENST00000469172.5_1_10:70097616-70097877:+|nuORF	ENST00000469172.5_1_10:70097616-70097877:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	602.318114	1202.62167	1.8156	0.0010936	-1.6335	-0.00098388	0.18212	0.00010969	602.3168492889108	118.43	1.34	117.41	117.04	118.38	-1.0276	-0.10077	-0.0027768	NaN	59.931	51	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130700			7420	1951	5982	5992				69			0.02846886877387078
EIVRRIID	8	Unmodified	_EIVRRIID_					0	0	0		tr|A0A553SI40|A0A553SI40_NIACIHDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14145PE=4SV=1	tr|A0A553SI40|A0A553SI40_NIACIHDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14145PE=4SV=1	tr|A0A553SI40|A0A553SI40_NIACIHDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14145PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.7685546875	2	507.308741	1012.60293	2.3843	0.0012096	3.0294	0.0015368	5.4137	0.0027464	507.8124228756453	94.97	0.29929	94.97	94.819	95.119	0					10	6	2	0	0	0	0.028476	1	10332	10332		47.916	3.3845	1	184050			7421	33340	5983	5993	8524	8524					0.0971313808852301
EIVSIASVIE	10	Unmodified	_EIVSIASVIE_					0	0	0			REV__tr|A0A7D6VV42|A0A7D6VV42_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09385PE=3SV=1	REV__tr|A0A7D6VV42|A0A7D6VV42_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09385PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.7953491210938	2	530.300247	1058.58594	-1.8317	-0.00097135	3.5265	0.0018701	1.6948	0.00089873	530.3002935011276	54.779	0.461	51.532	51.132	51.593	-3.2474					11	8	2	0	0	0	0.026994	1	3419	3419		25.574	0	1	63473	+		7422	31706	5984	5994	8525	8525					0.05899172692056709
EIVSYYVT	8	Unmodified	_EIVSYYVT_					0	0	0			REV__ENSG00000171657|ENST00000302548|GPR82	REV__ENSG00000171657|ENST00000302548|GPR82	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.7619323730469	2	487.247483	972.480414	0.38577	0.00018797	1.1966	0.00058305	1.5824	0.00077101	487.2498756745141	60.463	0.24575	57.033	56.898	57.144	-3.43					5	4	2	0	0	0	0.028476	1	4084	4084		47.916	0	1	5214.2	+		7423	21634	5985	5995	8526	8526					-0.006927434335693761
EIVVAMVLQ	9	Unmodified	_EIVVAMVLQ_					0	0	0		ENSG00000168917|ENST00000446465|SLC35G2	ENSG00000168917|ENST00000446465|SLC35G2	ENSG00000168917|ENST00000446465|SLC35G2	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.2904968261719	2	501.288628	1000.5627	1.3674	0.00068548	2.2705	0.0011382	3.6379	0.0018236	501.2895121117765	137.98	2.3901	136.45	135.78	138.17	-1.5284					99	50	3	0	0	0	0.61208	1	13563	13563		30.504	5.0535	1	64432			7424	6955	5986	5996	8527	8527					0.06244455373735036
EIVYDFRAL	9	Unmodified	_EIVYDFRAL_					0	0	0			REV__ENST00000546793.1_1_12:53438990-53439816:-|nuORF	REV__ENST00000546793.1_1_12:53438990-53439816:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.7862548828125	2	563.300581	1124.58661	-0.22851	-0.00012872	0.15216	8.5712E-05	-0.076354	-4.301E-05	563.3008532767457	107.23	0.51638	105.35	105.22	105.74	-1.8785					16	9	2	0	0	0	0.027462	1	9810	9810		31.53	7.0106	1	21541	+		7425	27427	5987	5997	8528	8528					0.029300121317419325
EIWCLAVSP	9	Unmodified	_EIWCLAVSP_					0	0	0		WDR3|p.R930Gfs*9|1|0.09|ENSG00000065183|chr1:117959402-117959402|G/-|frameshift_variant;ENSG00000065183|ENST00000349139|WDR3	WDR3|p.R930Gfs*9|1|0.09|ENSG00000065183|chr1:117959402-117959402|G/-|frameshift_variant	WDR3|p.R930Gfs*9|1|0.09|ENSG00000065183|chr1:117959402-117959402|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.2803955078125	2	509.257328	1016.5001	-0.71021	-0.00036168	2.0296	0.0010336	1.3194	0.00067192	509.25910626873593	76.809	2.2481	75.019	74.214	76.462	-1.7894					59	42	2	0	0	0	0.027462	1	6373	6373		23.042	6.3375	1	99294			7426	1317	5988	5998	8529	8529					-0.007486906944677685
EIWQGGRQP	9	Unmodified	_EIWQGGRQP_					0	0	0		ENST00000420054.5_1_1:54651905-54661258:-|nuORF;ENST00000311841.7_2_1:54618851-54661198:-|nuORF	ENST00000420054.5_1_1:54651905-54661258:-|nuORF	ENST00000420054.5_1_1:54651905-54661258:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2935180664062	2	535.772522	1069.53049	1.8545	0.0009936	3.9166	0.0020984	5.7711	0.003092	535.7742704751009	77.978	0.70245	77.978	77.672	78.374	0					45	16	4	0	0	0	0.027392	1	7849	7849		53.351	0	1	875490			7427	11664	5989	5999	8530	8530					-0.0014919598502274312
EIYFLLSF	8	Unmodified	_EIYFLLSF_					0	0	0			REV__chr3:23864349-23887567|151|12.52|0.57|4.45|+|0|TE_info:HAL1,HAL1_dup4190,L1,LINE,donor,-,23863830,23864349|None,UBE2E1|5	REV__chr3:23864349-23887567|151|12.52|0.57|4.45|+|0|TE_info:HAL1,HAL1_dup4190,L1,LINE,donor,-,23863830,23864349|None,UBE2E1|5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7941284179688	2	516.276044	1030.53753	-0.80575	-0.00041599	3.5963	0.0018567	2.7905	0.0014407	516.2778004412517	52.688	1.2584	49.48	49.196	50.454	-3.208					63	24	5	0	0	0	0.028476	1	3245	3245		7.1934	1.6355	1	276210	+		7428	16045	5990	6000	8531	8531					0.023487238428060664
EIYKEDGYLV	10	Unmodified	_EIYKEDGYLV_					0	0	0			REV__tr|A0A553SIJ5|A0A553SIJ5_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_15010PE=3SV=1	REV__tr|A0A553SIJ5|A0A553SIJ5_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_15010PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	614.7822875976562	2	614.808436	1227.60232	-0.04433	-2.7254E-05	3.2152	0.0019767	3.1709	0.0019495	615.3122335161054	105.14	0.22098	105.14	105	105.22	0					9	4	3	0	0	0	0.026553	1	11791	11791		39.253	0	1	111790	+		7429	29898	5991	6001	8532	8532					-0.002377461418745952
EIYRKADAVQ	10	Unmodified	_EIYRKADAVQ_					0	0	0			REV__ENSG00000151655|ENST00000358415|ITIH2	REV__ENSG00000151655|ENST00000358415|ITIH2	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.8045043945312	2	596.81967	1191.62479	1.8428	0.0010998	3.8151	0.0022769	5.6579	0.0033767	596.8230437942246	108.9	0.39228	108.9	108.67	109.06	0					12	8	2	0	0	0	0.026915	1	12329	12329		14.865	0	1	192500	+		7430	20245	5992	6002	8533	8533					0.036638980464203996
EIYSENILN	9	Unmodified	_EIYSENILN_					0	0	0		nc|ENSG00000206384|A6NMZ7-2|COL6A6;ENSG00000206384|ENST00000358511|COL6A6	nc|ENSG00000206384|A6NMZ7-2|COL6A6	nc|ENSG00000206384|A6NMZ7-2|COL6A6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.2928466796875	2	547.771854	1093.52915	-1.222	-0.00066936	-2.8811	-0.0015782	-4.1031	-0.0022476	547.771830425962	100.86	0.97826	98.592	98.135	99.113	-2.2665					18	19	2	0	0	0	0.027462	1	9087	9087		34.173	0	1	148280			7431	9097	5993	6003	8534	8534					-0.01386874864465426
EIYSENILN	9	Unmodified	_EIYSENILN_					0	0	0		nc|ENSG00000206384|A6NMZ7-2|COL6A6;ENSG00000206384|ENST00000358511|COL6A6	nc|ENSG00000206384|A6NMZ7-2|COL6A6	nc|ENSG00000206384|A6NMZ7-2|COL6A6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	547.771854	1093.52915	-0.63082	-0.00034555	-0.38019	-0.00020826	-1.011	-0.0005538	547.7718622605692	99.709	1.0913	98.879	98.368	99.459	-0.83052	0.14471	0.0003743	NaN	34.173	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45078			7432	9097	5993	6003							-0.01386874864465426
EIYSENILN	9	Unmodified	_EIYSENILN_					0	0	0		nc|ENSG00000206384|A6NMZ7-2|COL6A6;ENSG00000206384|ENST00000358511|COL6A6	nc|ENSG00000206384|A6NMZ7-2|COL6A6	nc|ENSG00000206384|A6NMZ7-2|COL6A6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	547.771854	1093.52915	-1.1515	-0.00063075	-1.7041	-0.00093348	-2.8556	-0.0015642	547.7710218936477	100.34	0.82625	98.731	98.518	99.344	-1.6053	-0.0027503	-0.0010761	NaN	34.173	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117520			7433	9097	5993	6003							-0.01386874864465426
EIYVAGLVAH	10	Unmodified	_EIYVAGLVAH_					0	0	0		nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.8330688476562	2	536.295299	1070.57605	-0.81601	-0.00043762	-2.8515	-0.0015292	-3.6675	-0.0019669	536.2937629383333	93.218	1.0809	92.05	91.756	92.837	-1.168					48	20	3	0	0	0	0.026939	1	8329	8329		17.365	0	1	121710			7434	4365	5994	6004	8535	8535					0.04358029477339187
EKAESIDNVL	10	Unmodified	_EKAESIDNVL_					0	0	0			REV__ENSG00000203933|ENST00000370540|CXorf66	REV__ENSG00000203933|ENST00000370540|CXorf66	MULTI-MSMS	OvCa9_classI_Rep3	3	559.2911376953125	2	559.290411	1116.56627	1.0679	0.00059727	-0.91057	-0.00050927	0.15734	8.7999E-05	559.289786703432	123.89	1.2949	122.85	122.51	123.81	-1.0377					64	24	4	0	0	0	0.50873	1	9593	9593		53.089	0	1	395230	+		7435	23119	5995	6005	8536	8536					0.012647966812892264
EKAGLDNWAL	10	Unmodified	_EKAGLDNWAL_					0	0	0		ENSG00000095777|ENST00000642920|MYO3A;MYO3A|p.G1034R|1|0.19|ENSG00000095777|chr10:26166167-26166167|G/A|missense_variant	ENSG00000095777|ENST00000642920|MYO3A	ENSG00000095777|ENST00000642920|MYO3A	MULTI-MSMS	OvCa99_classI_Rep5	1	558.7872924804688	2	558.787838	1115.56112	0.038392	2.1453E-05	-3.7896	-0.0021176	-3.7512	-0.0020961	558.7855678004087	52.239	0.52765	52.239	52.038	52.566	0					36	11	4	0	0	0	0.44431	1	4082	4082		62.107	3.8775	1	1489500			7436	1939	5996	6006	8537	8537					0.007965376093125087
EKAGWFRF	8	Unmodified	_EKAGWFRF_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-2|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.306640625	2	520.769252	1039.52395	-0.70195	-0.00036555	0.64091	0.00033376	-0.061039	-3.1787E-05	521.2723293427554	91.142	1.0618	89.118	88.624	89.685	-2.0241					34	20	2	0	0	0	0.028476	1	5648	5648		31.955	1.4512	1	37473			7437	8262	5997	6007	8538	8538					0.005769108542153845
EKAIESAKILI	11	Unmodified	_EKAIESAKILI_					0	0	0			REV__ENSG00000137473|ENST00000325106|TTC29	REV__ENSG00000137473|ENST00000325106|TTC29	MULTI-MSMS	OvCa99_classI_Rep5	1	607.8694458007812	2	607.871371	1213.72819	0.51993	0.00031605	-3.8146	-0.0023188	-3.2947	-0.0020027	607.8690066923475	114.31	1.2876	114.31	114.06	115.35	0					89	27	4	0	0	0	0.29406	1	13088	13088		68.846	3.6889	1	8458200	+		7438	19454	5998	6008	8539	8539					0.12987385434234966
EKAKEERII	9	Unmodified	_EKAKEERII_					0	0	0			REV__tr|A0A7D6VUU4|A0A7D6VUU4_9CLOTProbablecytosolaminopeptidaseOS=ClostridiumintestinaleOX=36845GN=pepAPE=3SV=1	REV__tr|A0A7D6VUU4|A0A7D6VUU4_9CLOTProbablecytosolaminopeptidaseOS=ClostridiumintestinaleOX=36845GN=pepAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.793701171875	2	558.324588	1114.63462	-0.035105	-1.96E-05	-0.29698	-0.00016581	-0.33208	-0.00018541	558.324518283759	54.411	0.97176	54.411	54.008	54.98	0					30	22	2	0	0	0	0.027425	1	4388	4388		46.457	0	1	243610	+		7439	31695	5999	6009	8540	8540					0.081890860518115
EKAKKAEQME	10	Unmodified	_EKAKKAEQME_					0	0	0		nc|ENSG00000204574|Q8NE71-2|ABCF1	nc|ENSG00000204574|Q8NE71-2|ABCF1	nc|ENSG00000204574|Q8NE71-2|ABCF1	MSMS	OvCa99_classI_Rep5	1	596.3059692382812	2	596.305538	1190.59652	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.534	1	46.534	46.034	47.034	0								0	0	0	0.081515	1	3292	3292		79.713	5.4575	1				7440	15270	6000	6010	8541	8541					0.00884832074825681
EKAKKAEQME	10	Unmodified	_EKAKKAEQME_					0	0	0		nc|ENSG00000204574|Q8NE71-2|ABCF1	nc|ENSG00000204574|Q8NE71-2|ABCF1	nc|ENSG00000204574|Q8NE71-2|ABCF1	MULTI-MSMS	OvCa9_classI_Rep2	2	596.3056030273438	2	596.305538	1190.59652	-1.7027	-0.0010153	2.486	0.0014824	0.78333	0.0004671	596.3063733554482	51.837	3.4202	49.024	48.253	51.674	-2.8129					160	68	4	0	0	0	0.42082	1	3418	3418		65.465	2.1591	1	554130			7441	15270	6000	6010	8542	8542					0.00884832074825681
EKAKKPRETA	10	Unmodified	_EKAKKPRETA_					0	0	0			REV__nc|ENSG00000196843|Q03989-5|ARID5A	REV__nc|ENSG00000196843|Q03989-5|ARID5A	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.3024291992188	2	579.335487	1156.65642	-0.79143	-0.0004585	0.8002	0.00046358	0.0087732	5.0826E-06	579.335905277523	53.192	0.30433	53.192	53.043	53.347	0					11	6	2	0	0	0	0.026656	1	4202	4202		65.465	5.3471	1	416050	+		7442	22868	6001	6011	8543	8543					0.08435890800365087
EKAKLTAL	8	Unmodified	_EKAKLTAL_					0	0	0			REV__tr|A0A7D6VT56|A0A7D6VT56_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01550PE=3SV=1	REV__tr|A0A7D6VT56|A0A7D6VT56_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01550PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	436.7646789550781	2	437.273835	872.533118	0.28346	0.00012395	-0.28403	-0.0001242	-0.00057016	-2.4932E-07	437.27372744460007	59.735	0.30693	59.735	59.611	59.918	0					11	7	2	0	0	0	0.028476	1	5186	5186		12.207	0	1	139090	+		7443	31573	6002	6012	8544	8544					0.09175259419873782
EKALFRAL	8	Unmodified	_EKALFRAL_					0	0	0		ENSG00000101361|ENST00000329276|NOP56;ENSG00000055044|ENST00000264279|NOP58	ENSG00000101361|ENST00000329276|NOP56;ENSG00000055044|ENST00000264279|NOP58	ENSG00000101361|ENST00000329276|NOP56	MULTI-SECPEP	OvCa9_classI_Rep4_	4	474.7549743652344	2	474.287277	946.560001	0.81316	0.00038567	-1.3301	-0.00063086	-0.51697	-0.00024519	474.28705478613307	56.73	0.30538	53.4	53.186	53.491	-3.3299					7	5	2	0	0	0	0.028476	1	3656	3656		35.618	11.416	1	9697.8			7444	2172;1216	6003	6013	8545	8545					0.08458368031085683
EKALRLDK	8	Unmodified	_EKALRLDK_					0	0	0			REV__tr|A0A553SPZ7|A0A553SPZ7_NIACINAD(P)-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_15375PE=4SV=1	REV__tr|A0A553SPZ7|A0A553SPZ7_NIACINAD(P)-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_15375PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.84368896484375	2	486.795466	971.57638	0.73996	0.00036021	-0.86841	-0.00042274	-0.12845	-6.2528E-05	486.794939902594	67.087	0.51421	67.087	66.857	67.371	0					18	12	2	0	0	0	0.028476	1	6236	6236		44.117	6.3053	1	414060	+		7445	30588	6004	6014	8546	8546					0.08945449197176458
EKARQREP	8	Unmodified	_EKARQREP_					0	0	0			REV__ENST00000598532.1_1_19:17445809-17447740:+|nuORF	REV__ENST00000598532.1_1_19:17445809-17447740:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.7629699707031	2	507.277972	1012.54139	-0.47338	-0.00024013	3.5164	0.0017838	3.0431	0.0015437	507.28159020509014	114.68	0.8886	114.56	114.21	115.1	-0.11777					24	17	2	0	0	0	0.028476	1	10972	10972		57.811	0	1	15614	+		7446	28011	6005	6015	8547	8547					0.035622063892333244
EKAYDVNWG	9	Unmodified	_EKAYDVNWG_					0	0	0			REV__tr|A0A7D6ZGN9|A0A7D6ZGN9_9CLOTCotSfamilysporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19650PE=4SV=1	REV__tr|A0A7D6ZGN9|A0A7D6ZGN9_9CLOTCotSfamilysporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19650PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.8327026367188	2	541.251089	1080.48762	2.1084	0.0011412	-2.6752	-0.001448	-0.5668	-0.00030678	541.2510662174155	92.872	0.62816	92.872	92.635	93.263	0					43	14	5	0	0	0	0.027462	1	10022	10022		39.253	17.55	1	1329100	+		7447	32004	6006	6016	8548	8548					-0.04940010833138331
EKCFQRALEK	10	Unmodified	_EKCFQRALEK_					0	0	0		ENSG00000198677|ENST00000358746|SKIC3;ENST00000513232.1_1_5:94857997-94861145:-|nuORF	ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	417.9065856933594	3	417.888657	1250.64414	-0.69071	-0.00028864	-1.0052	-0.00042008	-1.696	-0.00070872	417.8877037966755	51.452	0.55098	48.279	48.022	48.573	-3.1734					12	10	2	0	0	0	0.02659	1	3032	3032		72.243	32.37	1	21068			7448	8846	6007	6017	8549	8549					0.02884531065660667
EKCKHLKES	9	Unmodified	_EKCKHLKES_					0	0	0			REV__ENSG00000198556|ENST00000331410|ZNF789	REV__ENSG00000198556|ENST00000331410|ZNF789	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.3045043945312	2	551.289691	1100.56483	-0.056542	-3.1171E-05	-3.7099	-0.0020452	-3.7665	-0.0020764	551.2866120390136	64.09	0.34224	60.615	60.49	60.833	-3.475					9	6	2	0	0	0	0.027185	1	4532	4532		82.241	34.583	1	15476	+		7449	23030	6008	6018	8550	8550					0.018568841115438772
EKCRKILVN	9	Unmodified	_EKCRKILVN_					0	0	0			REV__nc|ENSG00000168016|O15050|TRANK1	REV__nc|ENSG00000168016|O15050|TRANK1	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.28955078125	2	551.823701	1101.63285	0.23121	0.00012758	2.7446	0.0015146	2.9758	0.0016421	551.8252017993473	94.615	1.1371	93.516	93.01	94.147	-1.0995					48	22	3	0	0	0	0.027462	1	8479	8479		21.96	0	1	115790	+		7450	21335	6009	6019	8551	8551					0.08609753762220862
EKDATSMPGPA	11	Unmodified	_EKDATSMPGPA_					0	0	0			REV__ENST00000310015.10_1_2:174830139-174830370:-|nuORF	REV__ENST00000310015.10_1_2:174830139-174830370:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.3021240234375	2	552.255514	1102.49647	-0.46732	-0.00025808	2.9768	0.0016439	2.5094	0.0013859	552.2567208790222	101.7	0.24762	100.94	100.81	101.06	-0.76401					6	4	2	0	0	0	0.025528	1	9324	9324		35.152	25.446	1	10766	+		7451	24333	6010	6020	8552	8552					-0.05067405258978397
EKDFQTEAR	9	Unmodified	_EKDFQTEAR_					0	0	0			REV__tr|A0A7D6W0S8|A0A7D6W0S8_9CLOTDUF1015domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00685PE=4SV=1	REV__tr|A0A7D6W0S8|A0A7D6W0S8_9CLOTDUF1015domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00685PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.314453125	2	562.272552	1122.53055	0.57565	0.00032367	1.3889	0.00078094	1.9646	0.0011046	562.7759697174753	31.657	0.29787	31.657	31.46	31.757	0					10	5	3	0	0	0	0.027462	1	1300	1300		34.173	1.3601	1	12394	+		7452	31864	6011	6021	8553	8553					-0.02581240775725746
EKDKEIFIRRY	11	Unmodified	_EKDKEIFIRRY_					0	0	0		tr|A0A7D6VU54|A0A7D6VU54_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_05780PE=3SV=1	tr|A0A7D6VU54|A0A7D6VU54_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_05780PE=3SV=1	tr|A0A7D6VU54|A0A7D6VU54_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_05780PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	499.6106262207031	3	499.612181	1495.81471	-0.67218	-0.00033583	-2.5532	-0.0012756	-3.2253	-0.0016114	499.61096854493144	25.167	0.85493	25.167	24.938	25.793	0					54	16	5	0	0	0	0.72069	1	538	538		22.562	0.78116	1	2207200			7453	35166	6012	6022	8554	8554					0.08663764988773437
EKDKEKLEQ	9	Unmodified	_EKDKEKLEQ_					0	0	0			REV__tr|A0A7D6W3F2|A0A7D6W3F2_9CLOTAlanine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=alaSPE=3SV=1	REV__tr|A0A7D6W3F2|A0A7D6W3F2_9CLOTAlanine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=alaSPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	573.8065185546875	2	573.803685	1145.59282	-0.61872	-0.00035502	0.30123	0.00017284	-0.3175	-0.00018218	573.8037062838122	24.315	0.60026	24.315	24.188	24.788	0					33	11	4	0	0	0	0.3076	1	457	457		62.107	9.1707	1	362810	+		7454	31914	6013	6023	8555	8555					0.025844855726063543
EKDKPVAP	8	Unmodified	_EKDKPVAP_					0	0	0		ENST00000569787.1_1_16:22328322-22336592:+|nuORF;POLR3E|p.V433Sfs*5|1|0.04|ENSG00000058600|chr16:22325210-22325210|A/-|frameshift_variant;nc|ENSG00000058600|Q9NVU0-3|POLR3E;nc|ENSG00000058600|Q9NVU0-2|POLR3E;nc|ENSG00000058600|Q9NVU0-5|POLR3E;ENST00000564061.5_1_16:22308800-22337695:+|nuORF;nc|ENSG00000058600|Q9NVU0-4|POLR3E;ENSG00000058600|ENST00000299853|POLR3E	ENST00000569787.1_1_16:22328322-22336592:+|nuORF	ENST00000569787.1_1_16:22328322-22336592:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	443.2435607910156	2	442.247818	882.481082	0.016705	7.3879E-06	0.87124	0.0003853	0.88794	0.00039269	442.2481941062649	61.02	1.6474	57.59	57.244	58.891	-3.43					46	33	2	0	0	0	0.028476	1	4276	4276		58.782	11.125	1	52169			7455	1246	6014	6024	8556	8556					0.0351409600613124
EKDKTKLEL	9	Unmodified	_EKDKTKLEL_					0	0	0			REV__ANKRD12|p.I1120T|1|0.64|ENSG00000101745|chr18:9256626-9256626|T/C|missense_variant	REV__ANKRD12|p.I1120T|1|0.64|ENSG00000101745|chr18:9256626-9256626|T/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.8104248046875	2	552.318971	1102.62339	0.55775	0.00030805	-1.3958	-0.00077095	-0.8381	-0.0004629	552.3182639055397	67.113	0.6678	67.113	66.898	67.566	0					33	16	3	0	0	0	0.027417	1	6246	6246		78.264	25.327	1	2437800	+		7456	15633	6015	6025	8557	8557					0.07618263957647287
EKDKTKLEL	9	Unmodified	_EKDKTKLEL_					0	0	0			REV__ANKRD12|p.I1120T|1|0.64|ENSG00000101745|chr18:9256626-9256626|T/C|missense_variant	REV__ANKRD12|p.I1120T|1|0.64|ENSG00000101745|chr18:9256626-9256626|T/C|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	552.318971	1102.62339	0.51951	0.00028693	-0.57461	-0.00031737	-0.055101	-3.0433E-05	552.317586068472	69.903	0.74927	67.333	67.015	67.765	-2.5707	0.10975	0.00071595	NaN	78.264	20	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24704	+		7457	15633	6015	6025							0.07618263957647287
EKDLEEAE	8	Unmodified	_EKDLEEAE_					0	0	0		ENST00000436520.1_1_X:33059580-33059835:+|nuORF;ENSG00000171530|ENST00000380377|TBCA	ENST00000436520.1_1_X:33059580-33059835:+|nuORF	ENST00000436520.1_1_X:33059580-33059835:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	481.7200622558594	2	481.719287	961.424021	-0.0093822	-4.5196E-06	1.3294	0.00064041	1.3201	0.00063589	481.71979812928186	33.158	0.44363	33.158	32.941	33.384	0					26	8	4	0	0	0	0.33046	1	1505	1505		101.6	5.4103	1	334010			7458	7211	6016	6026	8558	8558					-0.05823416060900399
EKDLHKLE	8	Unmodified	_EKDLHKLE_					0	0	0			REV__tr|A0A7D6ZZI2|A0A7D6ZZI2_9CLOTV-typeATPasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_06125PE=4SV=1	REV__tr|A0A7D6ZZI2|A0A7D6ZZI2_9CLOTV-typeATPasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_06125PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.27880859375	2	506.277106	1010.53966	-0.091436	-4.6292E-05	-0.013882	-7.0281E-06	-0.10532	-5.332E-05	506.27678824950533	61.005	1.2162	57.575	57.194	58.41	-3.43					56	24	4	0	0	0	0.64371	1	4168	4168		54.776	0	1	511320	+		7459	32411	6017	6027	8559	8559					0.03481152580604885
EKDMIQKVI	9	Unmodified	_EKDMIQKVI_					0	0	0			REV__tr|A0A553SJ24|A0A553SJ24_NIACIATPphosphoribosyltransferaseregulatorysubunitOS=NialliacirculansOX=1397GN=hisZPE=3SV=1	REV__tr|A0A553SJ24|A0A553SJ24_NIACIATPphosphoribosyltransferaseregulatorysubunitOS=NialliacirculansOX=1397GN=hisZPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.8104248046875	2	552.310092	1102.60563	0.81436	0.00044978	-0.53022	-0.00029284	0.28414	0.00015694	552.3097051302376	67.021	0.19846	67.021	66.857	67.055	0					6	4	2	0	0	0	0.027411	1	6246	6246		87.696	40.039	1	1963000	+		7460	29957	6018	6028	8560	8560					0.05843225431181054
EKDMKGEIIT	10	Unmodified	_EKDMKGEIIT_					0	0	0			REV__tr|A0A7D6ZJJ7|A0A7D6ZJJ7_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11300PE=3SV=1	REV__tr|A0A7D6ZJJ7|A0A7D6ZJJ7_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11300PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.8096313476562	2	582.302464	1162.59037	1.8916	0.0011015	3.197	0.0018616	5.0885	0.0029631	582.3041595930733	108.32	0.21393	108.32	108.24	108.45	0					6	4	2	0	0	0	0.026714	1	12240	12240		42.864	0	1	215880	+		7461	32086	6019	6029	8561	8561					0.015583138433157728
EKDRKVKIDKR	11	Unmodified	_EKDRKVKIDKR_					0	0	0		ENSG00000089048|ENST00000617257|ESF1	ENSG00000089048|ENST00000617257|ESF1	ENSG00000089048|ENST00000617257|ESF1	MULTI-MSMS	OvCa9_classI_Rep2	2	472.2823181152344	3	472.287808	1413.8416	-4.9211	-0.0023242	-3.9899	-0.0018844	-8.911	-0.0042086	472.28593650401154	158.64	2.575	158.42	157.5	160.08	-0.22696					106	62	3	0	0	0	0.72528	1	16063	16063		11.932	2.2862	1	56212			7462	1805	6020	6030	8562	8562					0.15122873599966624
EKDRLKPKKKE	11	Unmodified	_EKDRLKPKKKE_					0	0	0		ENSG00000119616|ENST00000341162|FCF1	ENSG00000119616|ENST00000341162|FCF1	ENSG00000119616|ENST00000341162|FCF1	MULTI-MSMS	OvCa9_classI_Rep3	3	466.95196533203125	3	466.952426	1397.83545	1.5916	0.00074322	-2.0144	-0.00094062	-0.42273	-0.00019739	466.9514863874782	62.714	2.1935	59.681	59.362	61.555	-3.0339					129	43	5	0	0	0	0.71321	1	2362	2362		25.126	3.4402	1	504980			7463	3374	6021	6031	8563	8563					0.15244355368440665
EKDRLVRQL	9	Unmodified	_EKDRLVRQL_					0	0	0			REV__ENST00000467707.1_1_9:128116999-128121864:+|nuORF	REV__ENST00000467707.1_1_9:128116999-128121864:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	578.8441772460938	2	578.843479	1155.67241	-2.2343	-0.0012933	1.5991	0.00092561	-0.63527	-0.00036772	578.8443365120079	62.369	1.539	59.61	59.236	60.775	-2.7593					81	29	4	0	0	0	0.51865	1	4693	4693		40.778	1.5253	1	202270	+		7464	21070	6022	6032	8564	8564					0.10079597037292842
EKDSYPRFL	9	Unmodified	_EKDSYPRFL_					0	0	0		ENSG00000143333|ENST00000367558|RGS16;ENST00000490241.1_1_9:116357838-116359230:+|nuORF;ENSG00000135824|ENST00000515211|RGS8;nc|ENSG00000135824|P57771-2|RGS8;nc|ENSG00000138835|P49796-2|RGS3;ENSG00000090104|ENST00000367459|RGS1;nc|ENSG00000138835|P49796-8|RGS3;nc|ENSG00000138835|P49796-7|RGS3;nc|ENSG00000138835|P49796-4|RGS3;ENSG00000138835|ENST00000695401|RGS3;nc|ENSG00000138835|P49796-6|RGS3;nc|ENSG00000138835|P49796|RGS3;nc|ENSG00000138835|P49796-1|RGS3;nc|ENSG00000138835|P49796-9|RGS3	ENSG00000143333|ENST00000367558|RGS16;nc|ENSG00000138835|P49796-8|RGS3;nc|ENSG00000138835|P49796-4|RGS3	nc|ENSG00000138835|P49796-4|RGS3	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.3546142578125	2	577.795663	1153.57677	3.3351	0.001927	-0.78398	-0.00045298	2.5512	0.001474	577.7951655014848	88.475	0.3394	88.475	88.212	88.551	0					12	7	2	0	0	0	0.027462	1	9400	9400		44.377	14.059	1	384940			7465	15049;4738;5036	6023	6033	8565	8565					0.006128241263922973
EKDYVWIWNEQ	11	Unmodified	_EKDYVWIWNEQ_					0	0	0		ENST00000549443.5_1_12:70671967-70726591:+|nuORF	ENST00000549443.5_1_12:70671967-70726591:+|nuORF	ENST00000549443.5_1_12:70671967-70726591:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	504.2977600097656	3	503.905141	1508.69359	-1.0987	-0.00055365	-3.9386	-0.0019847	-5.0373	-0.0025383	503.90307370486	40.515	1.7533	37.561	36.764	38.517	-2.9541					86	33	3	0	0	0	0.026079	1	1757	1757		14.086	4.8742	1	75447			7466	13573	6024	6034	8566	8566					-0.04040482444520421
EKEAGSVLLR	10	Unmodified	_EKEAGSVLLR_					0	0	0		ENST00000508802.5_1_4:38139025-38139151:+|nuORF	ENST00000508802.5_1_4:38139025-38139151:+|nuORF	ENST00000508802.5_1_4:38139025-38139151:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.2913208007812	2	551.316763	1100.61897	-0.93482	-0.00051538	-0.6595	-0.00036359	-1.5943	-0.00087897	551.3172893188715	65.891	0.92139	62.405	61.791	62.713	-3.4854					27	18	3	0	0	0	0.026694	1	4748	4748		46.457	0	1	78395			7467	12951	6025	6035	8567	8567					0.07268799534745085
EKEERFLIG	9	Unmodified	_EKEERFLIG_					0	0	0		nc|ENSG00000169398|Q05397-2|PTK2	nc|ENSG00000169398|Q05397-2|PTK2	nc|ENSG00000169398|Q05397-2|PTK2	MULTI-MSMS	OvCa9_classI_Rep2	2	560.8034057617188	2	560.803488	1119.59242	0.98251	0.00055099	-1.1969	-0.0006712	-0.21435	-0.00012021	560.8027147964513	112.28	0.74033	112.15	111.78	112.52	-0.12174					37	14	3	0	0	0	0.40667	1	10624	10624		51.335	0.14276	1	466450			7468	15172	6026	6036	8568	8568					0.03741110643431966
EKEFLRKLV	9	Unmodified	_EKEFLRKLV_					0	0	0		ENST00000495482.1_1_1:44386060-44395890:+|nuORF;ENST00000490541.5_1_1:44365189-44395890:+|nuORF;nc|ENSG00000126091|Q11203-21|ST3GAL3;nc|ENSG00000126091|Q11203-16|ST3GAL3;nc|ENSG00000126091|Q11203-8|ST3GAL3;nc|ENSG00000126091|Q11203-7|ST3GAL3;nc|ENSG00000126091|Q11203-5|ST3GAL3;nc|ENSG00000126091|Q11203-15|ST3GAL3;ENSG00000126091|ENST00000347631|ST3GAL3;nc|ENSG00000126091|Q11203-2|ST3GAL3;nc|ENSG00000126091|Q11203-19|ST3GAL3;nc|ENSG00000126091|Q11203-13|ST3GAL3;nc|ENSG00000126091|Q11203-4|ST3GAL3	ENST00000495482.1_1_1:44386060-44395890:+|nuORF	ENST00000495482.1_1_1:44386060-44395890:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	581.3554077148438	2	581.353148	1160.69174	-1.1503	-0.00066875	3.8995	0.002267	2.7491	0.0015982	581.3552675296014	26.063	1.5477	26.063	25.743	27.291	0					63	30	3	0	0	0	0.55588	1	626	626		37.159	1.5408	1	120500			7469	3766	6027	6037	8569	8569					0.11782553328180256
EKEIHHNE	8	Unmodified	_EKEIHHNE_					0	0	0			REV__tr|A0A7D6VSS7|A0A7D6VSS7_9CLOTHDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00065PE=4SV=1	REV__tr|A0A7D6VSS7|A0A7D6VSS7_9CLOTHDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00065PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.7593383789062	2	518.246338	1034.47812	-0.85209	-0.00044159	3.236	0.0016771	2.3839	0.0012355	518.2484087526263	39.338	0.22365	39.338	39.196	39.42	0					7	4	2	0	0	0	0.028476	1	2310	2310		34.173	3.6689	1	27703	+		7470	31535	6028	6038	8570	8570					-0.03773779118660059
EKEKGDPVKM	10	Unmodified	_EKEKGDPVKM_					0	0	0		ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11;ANKRD11|p.R1597Lfs*44|1|0.12|ENSG00000167522|chr16:89281752-89281753|-/A|frameshift_variant;ANKRD11|p.H1613Tfs*39|1|0.32|ENSG00000167522|chr16:89281705-89281706|-/GGCACGGGCGTGGAGTGCTGCGAGTCGGCGCAGT|frameshift_variant	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	580.8051147460938	2	580.802631	1159.59071	-0.76397	-0.00044372	-0.80567	-0.00046793	-1.5696	-0.00091165	580.8017753460568	64.438	1.2538	64.438	64.132	65.385	0					56	30	2	0	0	0	0.42082	1	5848	5848		65.465	6.6834	1	9513100			7471	6795	6029	6039	8571	8571					0.017297335631610622
EKEKGDPVKM	10	Unmodified	_EKEKGDPVKM_					0	0	0		ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11;ANKRD11|p.R1597Lfs*44|1|0.12|ENSG00000167522|chr16:89281752-89281753|-/A|frameshift_variant;ANKRD11|p.H1613Tfs*39|1|0.32|ENSG00000167522|chr16:89281705-89281706|-/GGCACGGGCGTGGAGTGCTGCGAGTCGGCGCAGT|frameshift_variant	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	580.802631	1159.59071	-0.68937	-0.00040039	-5.3363	-0.0030994	-6.0257	-0.0034997	581.3007936505895	67.228	0.39572	64.567	64.347	64.743	-2.661	0.087057	0.00039544	NaN	65.465	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10686			7472	6795	6029	6039							0.017297335631610622
EKEKGDPVKM	10	Unmodified	_EKEKGDPVKM_					0	0	0		ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11;ANKRD11|p.R1597Lfs*44|1|0.12|ENSG00000167522|chr16:89281752-89281753|-/A|frameshift_variant;ANKRD11|p.H1613Tfs*39|1|0.32|ENSG00000167522|chr16:89281705-89281706|-/GGCACGGGCGTGGAGTGCTGCGAGTCGGCGCAGT|frameshift_variant	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	580.802631	1159.59071	0.51968	0.00030183	-7.645	-0.0044402	-7.1253	-0.0041384	580.7985326372826	67.924	0.63223	64.434	64.284	64.916	-3.4902	-0.045525	-0.0022863	NaN	65.465	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43998			7473	6795	6029	6039							0.017297335631610622
EKEKLWKKKEL	11	Unmodified	_EKEKLWKKKEL_					0	0	0		ENSG00000153237|ENST00000283233|CCDC148;nc|ENSG00000153237|Q8NFR7-2|CCDC148	ENSG00000153237|ENST00000283233|CCDC148	ENSG00000153237|ENST00000283233|CCDC148	MULTI-MSMS	OvCa9_classI_Rep2	2	486.9590148925781	3	486.96081	1457.8606	-4.7826	-0.0023289	0.9634	0.00046914	-3.8192	-0.0018598	486.9610953135575	160.39	2.6298	160.16	159.25	161.88	-0.22696					128	53	4	0	0	0	0.72545	1	16403	16403		9.6461	0.43434	1	96650			7474	5670	6030	6040	8572	8572					0.1499841017102881
EKEKQLKINRL	11	Unmodified	_EKEKQLKINRL_					0	0	0		ENSG00000006611|ENST00000005226|USH1C	ENSG00000006611|ENST00000005226|USH1C	ENSG00000006611|ENST00000005226|USH1C	MULTI-MSMS	OvCa9_classI_Rep3	3	466.95172119140625	3	466.952426	1397.83545	1.5916	0.00074322	-2.0144	-0.00094062	-0.42273	-0.00019739	466.9514863874782	62.714	2.1935	59.681	59.362	61.555	-3.0339					129	43	5	0	0	0	0.70587	1	2338	2338		27.644	5.0823	1	504980			7475	883	6031	6041	8573	8573					0.15244355368463403
EKELGIPALLD	11	Unmodified	_EKELGIPALLD_					0	0	0		ENSG00000100139|ENST00000215957|MICALL1	ENSG00000100139|ENST00000215957|MICALL1	ENSG00000100139|ENST00000215957|MICALL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	599.30224609375	2	599.339904	1196.66525	0.57352	0.00034373	-4.3223	-0.0025905	-3.7488	-0.0022468	599.3373247380376	162.24	0.45334	162.24	162.02	162.48	0					14	8	2	0	0	0	0.025681	1	19032	19032		34.173	11.593	1	23557			7476	2014	6032	6042	8574	8574					0.0747881964618955
EKELKQKVRQL	11	Unmodified	_EKELKQKVRQL_					0	0	0			REV__MYH13|p.Q1539Hfs*44|1|0.11|ENSG00000006788|chr17:10311142-10311143|-/G|frameshift_variant;REV__ENSG00000133020|ENST00000403437|MYH8;REV__ENSG00000264424|ENST00000255381|MYH4;REV__ENSG00000109063|ENST00000583535|MYH3	REV__ENSG00000264424|ENST00000255381|MYH4	MULTI-MSMS	OvCa9_classI_Rep3	3	466.9520568847656	3	466.952426	1397.83545	1.5916	0.00074322	-2.0144	-0.00094062	-0.42273	-0.00019739	466.9514863874782	62.714	2.1935	59.681	59.362	61.555	-3.0339					129	43	5	0	0	0	0.46188	1	2300	2300		56.632	1.5483	1	504980	+		7477	19118;23581;16425;17914	6033	6043	8575	8575					0.1524435536848614
EKELKVVPIG	10	Unmodified	_EKELKVVPIG_					0	0	0			REV__ENST00000481424.5_1_7:99217223-99217685:+|nuORF	REV__ENST00000481424.5_1_7:99217223-99217685:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.2747192382812	2	556.339707	1110.66486	-0.04211	-2.3428E-05	-2.9708	-0.0016527	-3.0129	-0.0016762	556.3377377847517	47.516	0.34461	47.516	47.336	47.681	0					11	7	2	0	0	0	0.027001	1	3440	3440		21.686	4.2177	1	111380	+		7478	26477	6034	6044	8576	8576					0.11395444716981729
EKENKQLKA	9	Unmodified	_EKENKQLKA_					0	0	0		tr|A0A7D6VSM4|A0A7D6VSM4_9CLOTTetratricopeptiderepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13420PE=4SV=1	tr|A0A7D6VSM4|A0A7D6VSM4_9CLOTTetratricopeptiderepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13420PE=4SV=1	tr|A0A7D6VSM4|A0A7D6VSM4_9CLOTTetratricopeptiderepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13420PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.7714233398438	2	544.308938	1086.60332	-1.53	-0.00083278	-0.30161	-0.00016417	-1.8316	-0.00099695	544.3091385842711	42.825	0.89149	39.817	39.434	40.326	-3.0074					28	16	2	0	0	0	0.027462	1	2005	2005		58.23	5.2932	1	35690			7479	35037	6035	6045	8577	8577					0.06348513017701407
EKENQKLQA	9	Unmodified	_EKENQKLQA_					0	0	0		ENSG00000065882|ENST00000698857|TBC1D1;nc|ENSG00000065882|Q86TI0|TBC1D1;nc|ENSG00000065882|Q86TI0-2|TBC1D1	ENSG00000065882|ENST00000698857|TBC1D1	ENSG00000065882|ENST00000698857|TBC1D1	MULTI-SECPEP	OvCa9_classI_Rep2	2	544.7718505859375	2	544.290745	1086.56694	0.57475	0.00031283	3.298	0.0017951	3.8728	0.0021079	544.2925212158717	42.316	0.69081	39.607	39.374	40.065	-2.7097					17	13	2	0	0	0	0.027411	1	2279	2279		74.255	15.473	1	21763			7480	1338	6036	6046	8578	8578					0.027116361210119067
EKEPTQKKKL	10	Unmodified	_EKEPTQKKKL_					0	0	0		ENSG00000122122|ENST00000356892|SASH3	ENSG00000122122|ENST00000356892|SASH3	ENSG00000122122|ENST00000356892|SASH3	MULTI-SECPEP	OvCa99_classI_Rep5	1	615.8524169921875	2	614.86662	1227.71869	1.6191	0.00099553	-3.2687	-0.0020098	-1.6496	-0.0010143	615.3664642176457	129.77	1.1899	129.77	129.63	130.82	0					29	24	2	0	0	0	0.026782	1	15139	15139		23.523	0	1	229060			7481	3518	6037	6047	8579	8579					0.11393617148701196
EKEQELKTL	9	Unmodified	_EKEQELKTL_					0	0	0			REV__ENST00000533506.5_1_14:50458977-50459738:-|nuORF	REV__ENST00000533506.5_1_14:50458977-50459738:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	558.8147583007812	2	559.308603	1116.60265	-1.0608	-0.00059332	-0.47524	-0.00026581	-1.5361	-0.00085913	559.3081448326561	49.315	1.7163	46.174	45.78	47.496	-3.1416					49	32	2	0	0	0	0.027295	1	2799	2799		74.255	2.3776	1	475920	+		7482	27257	6038	6048	8580	8580					0.04901673578001464
EKEQELKTL	9	Unmodified	_EKEQELKTL_					0	0	0			REV__ENST00000533506.5_1_14:50458977-50459738:-|nuORF	REV__ENST00000533506.5_1_14:50458977-50459738:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	559.308603	1116.60265	-0.36579	-0.00020459	-0.82256	-0.00046007	-1.1884	-0.00066465	559.3080244059793	48.98	1.6359	46.219	45.729	47.365	-2.7603	0.022798	-0.00015795	NaN	74.255	46	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117770	+		7483	27257	6038	6048							0.04901673578001464
EKEQNGKKI	9	Unmodified	_EKEQNGKKI_					0	0	0			REV__tr|A0A553SJD0|A0A553SJD0_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_16575PE=4SV=1	REV__tr|A0A553SJD0|A0A553SJD0_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_16575PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	537.3014526367188	2	537.301113	1072.58767	0.34296	0.00018427	-1.2115	-0.00065093	-0.86851	-0.00046665	537.3005010796675	46.046	0.70182	46.046	45.8	46.501	0					40	15	4	0	0	0	0.049969	1	3238	3238		118.74	6.3322	1	5401500	+		7484	29995	6039	6049	8581	8581					0.054282265006804664
EKERQMKP	8	Unmodified	_EKERQMKP_					0	0	0			REV__ENST00000478182.5_1_3:119246651-119248702:-|nuORF	REV__ENST00000478182.5_1_3:119246651-119248702:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2702026367188	2	523.276583	1044.53861	-0.37789	-0.00019774	1.9751	0.0010335	1.5972	0.00083579	523.7786756312973	70.923	0.93893	70.923	70.488	71.427	0					31	21	2	0	0	0	0.028476	1	6822	6822		19.997	7.7901	1	965980	+		7485	26405	6040	6050	8582	8582					0.018126149400586655
EKESKKKI	8	Unmodified	_EKESKKKI_					0	0	0			REV__ENSG00000186439|ENST00000334268|TRDN	REV__ENSG00000186439|ENST00000334268|TRDN	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.2431640625	2	495.303124	988.591695	-0.017863	-8.8474E-06	0.77327	0.000383	0.75541	0.00037416	495.3033717326036	105.41	0.65825	105.41	105.09	105.75	0					35	14	3	0	0	0	0.028476	1	11824	11824		53.351	16.192	1	1549900	+		7486	22583	6041	6051	8583	8583					0.09694315994374847
EKETLAYFI	9	Unmodified	_EKETLAYFI_					0	0	0		ENST00000520731.1_1_5:153832004-153835585:+|nuORF;nc|ENSG00000164576|Q9HAJ7-2|SAP30L;nc|ENSG00000164576|Q9HAJ7-3|SAP30L;ENSG00000164576|ENST00000297109|SAP30L	ENST00000520731.1_1_5:153832004-153835585:+|nuORF	ENST00000520731.1_1_5:153832004-153835585:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.2747192382812	2	557.294965	1112.57538	-0.03494	-1.9472E-05	-3.2255	-0.0017976	-3.2605	-0.001817	557.2925979760095	47.841	0.69639	47.841	47.508	48.204	0					30	15	3	0	0	0	0.027433	1	3440	3440		51.335	0	1	691350			7487	6467	6042	6052	8584	8584					0.02359190037600456
EKEVIGGLCS	10	Unmodified	_EKEVIGGLCS_					0	0	0		ENST00000575300.1_1_16:4312060-4322792:-|nuORF;ENSG00000090447|ENST00000204517|TFAP4	ENST00000575300.1_1_16:4312060-4322792:-|nuORF	ENST00000575300.1_1_16:4312060-4322792:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.7625732421875	2	517.762975	1033.5114	-1.6957	-0.00087795	1.4447	0.00074802	-0.25095	-0.00012993	517.7633964064247	146.71	1.1132	145.28	144.91	146.02	-1.4357					49	21	3	0	0	0	0.71173	1	14423	14423		29.17	0.020503	1	143400			7488	1839	6043	6053	8585	8585					-0.004019133909878292
EKEYFRLT	8	Unmodified	_EKEYFRLT_					0	0	0			REV__tr|A0A553STD1|A0A553STD1_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04620PE=4SV=1	REV__tr|A0A553STD1|A0A553STD1_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04620PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8291015625	2	543.284931	1084.55531	0.0029958	1.6276E-06	-3.6688	-0.0019932	-3.6658	-0.0019916	543.282718957889	32.982	0.29188	32.982	32.844	33.136	0					10	5	2	0	0	0	0.028476	1	1498	1498		65.803	0	1	32137	+		7489	30950	6044	6054	8586	8586					0.0164143909764789
EKEYQDIREKL	11	Unmodified	_EKEYQDIREKL_					0	0	0			REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B	REV__nc|ENSG00000180777|Q9BXX2|ANKRD30B	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.2490539550781	3	484.256062	1449.74636	2.0428	0.00098924	-1.238	-0.00059952	0.80476	0.00038971	484.2554344487173	76.61	0.40218	76.61	76.48	76.882	0					18	9	3	0	0	0	0.026101	1	7679	7679		26.75	17.538	1	393160	+		7490	22195	6045	6055	8587	8587					0.03947475618247154
EKFIGKRA	8	Unmodified	_EKFIGKRA_					0	0	0			REV__tr|A0A7D6VRY0|A0A7D6VRY0_9CLOTCupindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02795PE=4SV=1	REV__tr|A0A7D6VRY0|A0A7D6VRY0_9CLOTCupindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02795PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.24658203125	2	474.784902	947.55525	0.22766	0.00010809	0.68058	0.00032313	0.90824	0.00043122	474.78524052720337	70.754	0.62151	70.754	70.528	71.15	0					24	15	2	0	0	0	0.028476	1	6836	6836		47.916	23.713	1	261350	+		7491	31453	6046	6056	8588	8588					0.07937483888338193
EKFIGKRA	8	Unmodified	_EKFIGKRA_					0	0	0			REV__tr|A0A7D6VRY0|A0A7D6VRY0_9CLOTCupindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02795PE=4SV=1	REV__tr|A0A7D6VRY0|A0A7D6VRY0_9CLOTCupindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02795PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	474.784902	947.55525	-0.29805	-0.00014151	0.21001	9.9711E-05	-0.08804	-4.18E-05	474.7847694884098	73.307	0.93967	70.907	70.483	71.422	-2.3999	0.091893	4.9539E-05	NaN	47.916	27	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23272	+		7492	31453	6046	6056							0.07937483888338193
EKFIGKRA	8	Unmodified	_EKFIGKRA_					0	0	0			REV__tr|A0A7D6VRY0|A0A7D6VRY0_9CLOTCupindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02795PE=4SV=1	REV__tr|A0A7D6VRY0|A0A7D6VRY0_9CLOTCupindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02795PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	474.784902	947.55525	0.74914	0.00035568	-0.78189	-0.00037123	-0.032753	-1.5551E-05	474.7843570050498	73.271	0.89181	70.784	70.579	71.471	-2.4873	-0.031376	-0.00089234	NaN	47.916	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32849	+		7493	31453	6046	6056							0.07937483888338193
EKFKRKAVL	9	Unmodified	_EKFKRKAVL_					0	0	0			REV__nc|ENSG00000117013|P56696-2|KCNQ4	REV__nc|ENSG00000117013|P56696-2|KCNQ4	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.2847290039062	2	559.855858	1117.69716	0.045339	2.5384E-05	-2.1923	-0.0012274	-2.147	-0.001202	559.8546779159205	55.058	0.75076	55.058	54.848	55.599	0					26	17	2	0	0	0	0.027462	1	4466	4466		27.882	0	1	285650	+		7494	18332	6047	6057	8589	8589					0.1430227691064374
EKFQRENRLMS	11	Unmodified	_EKFQRENRLMS_					0	0	0			REV__nc|ENSG00000219481|Q3BBV0|NBPF1	REV__nc|ENSG00000219481|Q3BBV0|NBPF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2633056640625	3	479.913754	1436.71943	-0.22234	-0.0001067	-2.157	-0.0010352	-2.3793	-0.0011419	479.9132594585565	73.291	0.44344	73.291	73.035	73.479	0					13	10	2	0	0	0	0.026033	1	7194	7194		8.4073	5.3813	1	112040	+		7495	23333	6048	6058	8590	8590					0.018540885261018047
EKFSFGKMK	9	Unmodified	_EKFSFGKMK_					0	0	0			REV__nc|nan|Q96EF9|ZHX1-C8orf76	REV__nc|nan|Q96EF9|ZHX1-C8orf76	MULTI-MSMS	OvCa99_classI_Rep5	1	551.2916870117188	2	551.291702	1100.56885	-1.1725	-0.00064639	0.76567	0.00042211	-0.40683	-0.00022428	551.292011867091	27.766	0.49931	27.766	27.591	28.091	0					19	9	3	0	0	0	0.48324	1	851	851		44.117	6.3053	1	427390	+		7496	22776	6049	6059	8591	8591					0.022589736052623266
EKFSPAGPVL	10	Unmodified	_EKFSPAGPVL_					0	0	0		nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4;PABPC4|p.L52Sfs*13|1|0.22|ENSG00000090621|chr1:39575778-39575802|GTTGACGTAGGCATAGCCCAGGGAG/-|frameshift_variant	nc|ENSG00000090621|Q13310-2|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.794677734375	2	522.78985	1043.56515	-1.0026	-0.00052415	-2.0796	-0.0010872	-3.0822	-0.0016113	522.7889860774795	53.712	0.25504	53.712	53.519	53.774	0					13	5	4	0	0	0	0.026465	1	4295	4295		63.534	0	1	2057900			7497	1844	6050	6060	8592	8592					0.04510627103036313
EKGAVLPQEI	10	Unmodified	_EKGAVLPQEI_					0	0	0		XRN1|p.G1339Efs*6|1|0.06|ENSG00000114127|chr3:142333013-142333014|-/T|frameshift_variant;ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1	XRN1|p.G1339Efs*6|1|0.06|ENSG00000114127|chr3:142333013-142333014|-/T|frameshift_variant	XRN1|p.G1339Efs*6|1|0.06|ENSG00000114127|chr3:142333013-142333014|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	543.2948608398438	2	542.305864	1082.59717	0.088998	4.8264E-05	4.4728	0.0024256	4.5618	0.0024739	542.3073850868977	118.37	1.2391	117.34	116.89	118.12	-1.0324					70	24	4	0	0	0	0.026568	1	8984	8984		74.165	3.3488	1	106630			7498	3014	6051	6061	8593	8593					0.05917994786182135
EKGAVLPQEI	10	Unmodified	_EKGAVLPQEI_					0	0	0		XRN1|p.G1339Efs*6|1|0.06|ENSG00000114127|chr3:142333013-142333014|-/T|frameshift_variant;ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1	XRN1|p.G1339Efs*6|1|0.06|ENSG00000114127|chr3:142333013-142333014|-/T|frameshift_variant	XRN1|p.G1339Efs*6|1|0.06|ENSG00000114127|chr3:142333013-142333014|-/T|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.305864	1082.59717	-1.6878	-0.00091529	6.3768	0.0034582	4.689	0.0025429	542.8109594618583	117.42	1.0906	117.29	116.86	117.96	-0.12868	-0.0030562	0.00069628	NaN	74.165	60	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100490			7499	3014	6051	6061							0.05917994786182135
EKGEYLYEI	9	Unmodified	_EKGEYLYEI_					0	0	0			REV__tr|A0A553SHR6|A0A553SHR6_NIACIPhosphonateABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=phnCPE=4SV=1	REV__tr|A0A553SHR6|A0A553SHR6_NIACIPhosphonateABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=phnCPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	572.2821044921875	2	572.282054	1142.54956	-1.0071	-0.00057632	-0.42687	-0.00024429	-1.4339	-0.00082061	572.2816685949413	99.976	1.9549	98.291	97.726	99.681	-1.685					89	38	4	0	0	0	0.2422	1	6763	6763		69.628	6.0938	1	732180	+		7500	29828	6052	6062	8594	8594					-0.016017042046541974
EKGEYLYEI	9	Unmodified	_EKGEYLYEI_					0	0	0			REV__tr|A0A553SHR6|A0A553SHR6_NIACIPhosphonateABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=phnCPE=4SV=1	REV__tr|A0A553SHR6|A0A553SHR6_NIACIPhosphonateABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=phnCPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	572.2830200195312	2	572.282054	1142.54956	-1.2364	-0.00070756	0.79125	0.00045282	-0.44513	-0.00025474	572.2823750627892	100.58	1.8921	98.311	97.978	99.87	-2.2665					97	37	5	0	0	0	0.10502	1	9015	9015		95.815	13.065	1	775740	+		7501	29828	6052	6062	8595	8595					-0.016017042046541974
EKGFLQNF	8	Unmodified	_EKGFLQNF_					0	0	0			REV__ENSG00000185823|ENST00000329468|NPAP1	REV__ENSG00000185823|ENST00000329468|NPAP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.2933654785156	2	491.753267	981.491981	-0.21116	-0.00010384	0.3076	0.00015126	0.096435	4.7422E-05	491.75322130530907	82.298	1.9462	79.615	79.298	81.245	-2.683					96	39	3	0	0	0	0.028476	1	6993	6993		24.203	0	1	190310	+		7502	22535	6053	6063	8596	8596					0.0004949838042875854
EKGHYANR	8	Unmodified	_EKGHYANR_					0	0	0		nc|ENSG00000160917|O95639-3|CPSF4;nc|ENSG00000160917|O95639-2|CPSF4;ENSG00000160917|ENST00000292476|CPSF4;ENST00000469897.1_1_7:99051318-99054120:+|nuORF	nc|ENSG00000160917|O95639-3|CPSF4	nc|ENSG00000160917|O95639-3|CPSF4	MULTI-MSMS	OvCa9_classI_Rep2	2	487.7449951171875	2	487.743765	973.472977	2.4472	0.0011936	0.97674	0.0004764	3.4239	0.00167	487.74399401921767	27.829	0.93581	25.12	24.742	25.677	-2.7097					37	20	3	0	0	0	0.75723	1	508	508		23.042	1.0826	1	33068			7503	6103	6054	6064	8597	8597					-0.014820381906247349
EKGISWINT	9	Unmodified	_EKGISWINT_					0	0	0		tr|A0A553SKM7|A0A553SKM7_NIACIDNAinternalization-relatedcompetenceproteinComEC/Rec2OS=NialliacirculansOX=1397GN=CEQ21_18895PE=4SV=1	tr|A0A553SKM7|A0A553SKM7_NIACIDNAinternalization-relatedcompetenceproteinComEC/Rec2OS=NialliacirculansOX=1397GN=CEQ21_18895PE=4SV=1	tr|A0A553SKM7|A0A553SKM7_NIACIDNAinternalization-relatedcompetenceproteinComEC/Rec2OS=NialliacirculansOX=1397GN=CEQ21_18895PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7628173828125	2	524.277106	1046.53966	-1.065	-0.00055836	-2.9991	-0.0015723	-4.0641	-0.0021307	524.2754322776572	66.266	0.82867	66.266	65.79	66.619	0					43	20	3	0	0	0	0.027462	1	6154	6154		14.137	0	1	2372100			7504	33634	6055	6065	8598	8598					0.01825152580613576
EKGLLKDTEL	10	Unmodified	_EKGLLKDTEL_					0	0	0		tr|A0A7D6VRN7|A0A7D6VRN7_9CLOTPhzFfamilyphenazinebiosynthesisisomeraseOS=ClostridiumintestinaleOX=36845GN=HZF06_02890PE=3SV=1	tr|A0A7D6VRN7|A0A7D6VRN7_9CLOTPhzFfamilyphenazinebiosynthesisisomeraseOS=ClostridiumintestinaleOX=36845GN=HZF06_02890PE=3SV=1	tr|A0A7D6VRN7|A0A7D6VRN7_9CLOTPhzFfamilyphenazinebiosynthesisisomeraseOS=ClostridiumintestinaleOX=36845GN=HZF06_02890PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	573.32470703125	2	573.324254	1144.63395	-0.81237	-0.00046575	-0.36947	-0.00021183	-1.1818	-0.00067758	573.3236392774631	110.43	0.79085	110.26	109.96	110.75	-0.17237					34	15	3	0	0	0	0.50873	1	10393	10393		53.089	3.6474	1	111910			7505	34946	6056	6066	8599	8599					0.0674224661208882
EKGLTKKRT	9	Unmodified	_EKGLTKKRT_					0	0	0		ENST00000594525.5_1_19:48248816-48255954:+|nuORF;ENST00000598681.5_1_19:48248882-48259836:+|nuORF;ENSG00000105373|ENST00000246802|NOP53	ENST00000594525.5_1_19:48248816-48255954:+|nuORF	ENST00000594525.5_1_19:48248816-48255954:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.2420654296875	2	530.827298	1059.64004	2.582	0.0013706	2.329	0.0012363	4.9109	0.0026069	530.8305804285255	75.634	0.15937	75.634	75.563	75.723	0					5	3	2	0	0	0	0.027462	1	7550	7550		42.396	11.892	1	164530			7506	2448	6057	6067	8600	8600					0.11260809634291036
EKGPGQWGRV	10	Unmodified	_EKGPGQWGRV_					0	0	0		ENST00000379089.5_1_9:34400393-34400651:-|nuORF	ENST00000379089.5_1_9:34400393-34400651:-|nuORF	ENST00000379089.5_1_9:34400393-34400651:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.8278198242188	2	557.293622	1112.57269	-0.31632	-0.00017629	0.037526	2.0913E-05	-0.2788	-0.00015537	557.2925385002671	68.035	0.67835	68.035	67.803	68.481	0					24	16	2	0	0	0	0.027033	1	6425	6425		41.427	7.911	1	396270			7507	11118	6058	6068	8601	8601					0.020907794233153254
EKGRVTISK	9	Unmodified	_EKGRVTISK_					0	0	0			REV__tr|A0A7D7A2W7|A0A7D7A2W7_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_21085PE=4SV=1	REV__tr|A0A7D7A2W7|A0A7D7A2W7_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_21085PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	509.29315185546875	2	509.306198	1016.59784	1.4745	0.00075099	-1.3857	-0.00070575	0.08884	4.5247E-05	509.3053171853482	28.8	0.40529	26.09	25.952	26.358	-2.7097					15	8	2	0	0	0	0.027462	1	657	657		24.519	2.5593	1	14964	+		7508	32556	6059	6069	8602	8602					0.09020834225907493
EKGWRRRR	8	Unmodified	_EKGWRRRR_					0	0	0		ENST00000597330.1_1_19:58557520-58558126:+|nuORF	ENST00000597330.1_1_19:58557520-58558126:+|nuORF	ENST00000597330.1_1_19:58557520-58558126:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.30126953125	2	572.333947	1142.65334	0.059208	3.3887E-05	1.949	0.0011155	2.0082	0.0011494	572.3350665538767	46.348	0.78244	46.348	46.112	46.894	0					39	17	4	0	0	0	0.028476	1	3274	3274		55.504	9.532	1	1802900			7509	14189	6060	6070	8603	8603					0.08772105256889517
EKHDVSVTFA	10	Unmodified	_EKHDVSVTFA_					0	0	0			REV__tr|A0A553SLJ2|A0A553SLJ2_NIACI3,4-dihydroxy-2-butanone4-phosphatesynthaseOS=NialliacirculansOX=1397GN=ribBPE=3SV=1	REV__tr|A0A553SLJ2|A0A553SLJ2_NIACI3,4-dihydroxy-2-butanone4-phosphatesynthaseOS=NialliacirculansOX=1397GN=ribBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.8535766601562	2	566.785296	1131.55604	0.26592	0.00015072	-4.0123	-0.0022741	-3.7464	-0.0021234	566.7834650013157	62.219	0.42152	62.219	62.038	62.46	0					11	9	2	0	0	0	0.026956	1	5514	5514		19.997	10.291	1	219360	+		7510	30228	6061	6071	8604	8604					-0.004477662532735849
EKHFKNGM	8	Unmodified	_EKHFKNGM_					0	0	0		nc|ENSG00000116761|P32929-2|CTH;nc|ENSG00000116761|P32929-3|CTH;ENSG00000116761|ENST00000370938|CTH	nc|ENSG00000116761|P32929-2|CTH	nc|ENSG00000116761|P32929-2|CTH	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.8016052246094	2	495.744919	989.475285	2.8122	0.0013941	2.8513	0.0014135	5.6635	0.0028077	495.74635164679876	130.6	0.63643	129.12	128.91	129.55	-1.4779					17	12	3	0	0	0	0.028476	1	12524	12524		25.45	2.4077	1	22527			7511	3208	6062	6072	8605	8605					-0.019873257771678254
EKHGFRDL	8	Unmodified	_EKHGFRDL_					0	0	0		nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1;ENSG00000155629|ENST00000339364|PIK3AP1	nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1	nc|ENSG00000155629|Q6ZUJ8-2|PIK3AP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.310302734375	2	501.261791	1000.50903	-0.44285	-0.00022199	0.68718	0.00034446	0.24433	0.00012247	501.2619092036306	47.89	0.52446	47.89	47.724	48.248	0					16	11	2	0	0	0	0.028476	1	3464	3464		49.442	12.282	1	269680			7512	5792	6063	6073	8606	8606					0.008794189862214807
EKHLEKLGL	9	Unmodified	_EKHLEKLGL_					0	0	0			REV__ENSG00000164294|ENST00000503787|GPX8	REV__ENSG00000164294|ENST00000503787|GPX8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.2724609375	2	533.816399	1065.61824	-1.1728	-0.00062606	-1.7431	-0.00093049	-2.9159	-0.0015565	533.8149554189966	89.158	1.5899	86.555	85.933	87.523	-2.6027					42	31	2	0	0	0	0.027462	1	7696	7696		23.042	3.0457	1	171040	+		7513	20968	6064	6074	8607	8607					0.08806004885695984
EKIALFVKSA	10	Unmodified	_EKIALFVKSA_					0	0	0			REV__nc|ENSG00000224287|P0C860|MSL3B	REV__nc|ENSG00000224287|P0C860|MSL3B	MULTI-MSMS	OvCa99_classI_Rep5	1	553.3341064453125	2	553.334424	1104.6543	0.91649	0.00050712	-2.7282	-0.0015096	-1.8117	-0.0010025	553.3328003393297	157.32	1.3723	157.32	157	158.37	0					80	27	4	0	0	0	0.70152	1	18427	18427		30.318	1.1682	1	1199000	+		7514	29137	6065	6075	8608	8608					0.10615462062582992
EKIEGFFKV	9	Unmodified	_EKIEGFFKV_					0	0	0		tr|A0A7D6VTB3|A0A7D6VTB3_9CLOTendopeptidaseLaOS=ClostridiumintestinaleOX=36845GN=HZF06_16610PE=3SV=1	tr|A0A7D6VTB3|A0A7D6VTB3_9CLOTendopeptidaseLaOS=ClostridiumintestinaleOX=36845GN=HZF06_16610PE=3SV=1	tr|A0A7D6VTB3|A0A7D6VTB3_9CLOTendopeptidaseLaOS=ClostridiumintestinaleOX=36845GN=HZF06_16610PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.2734985351562	2	548.8055	1095.59645	-0.25867	-0.00014196	-2.3865	-0.0013097	-2.6451	-0.0014517	548.8039865523047	71.568	0.40372	71.568	71.389	71.792	0					16	9	2	0	0	0	0.027072	1	6936	6936		79.713	0	1	455270			7515	35103	6066	6076	8609	8609					0.052472001371370425
EKIEGVKIVPV	11	Unmodified	_EKIEGVKIVPV_					0	0	0		tr|A0A7D7A564|A0A7D7A564_9CLOTendopeptidaseLaOS=ClostridiumintestinaleOX=36845GN=lonBPE=3SV=1	tr|A0A7D7A564|A0A7D7A564_9CLOTendopeptidaseLaOS=ClostridiumintestinaleOX=36845GN=lonBPE=3SV=1	tr|A0A7D7A564|A0A7D7A564_9CLOTendopeptidaseLaOS=ClostridiumintestinaleOX=36845GN=lonBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	605.8722534179688	2	605.873914	1209.73327	-4.9831	-0.0030191	1.7498	0.0010602	-3.2333	-0.001959	605.874829866227	157.02	0.88571	156.79	156.54	157.42	-0.22696					68	24	4	0	0	0	0.72473	1	16000	16000		19.104	1.6355	1	101120			7516	36159	6067	6077	8610	8610					0.13679689296827746
EKIEKHRRDI	10	Unmodified	_EKIEKHRRDI_					0	0	0			REV__tr|A0A7D6VVD8|A0A7D6VVD8_9CLOTZincribbondomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00275PE=4SV=1	REV__tr|A0A7D6VVD8|A0A7D6VVD8_9CLOTZincribbondomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00275PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.2910461425781	3	441.921237	1322.74188	-0.54769	-0.00024203	4.1956	0.0018541	3.6479	0.0016121	441.9227588253829	69.168	0.63828	65.678	65.312	65.951	-3.4902					21	12	2	0	0	0	0.027117	1	5122	5122		28.081	9.5504	1	26774	+		7517	31715	6068	6078	8611	8611					0.09342055986030573
EKIEKHRRDI	10	Unmodified	_EKIEKHRRDI_					0	0	0			REV__tr|A0A7D6VVD8|A0A7D6VVD8_9CLOTZincribbondomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00275PE=4SV=1	REV__tr|A0A7D6VVD8|A0A7D6VVD8_9CLOTZincribbondomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00275PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		3	441.921237	1322.74188	1.0642	0.00047028	2.1976	0.00097117	3.2618	0.0014414	441.92189557336883	68.463	0.90085	65.649	65.112	66.013	-2.8144	-0.014784	-0.0005616	NaN	16.007	41	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23181	+		7518	31715	6068	6078							0.09342055986030573
EKIHKYVDD	9	Unmodified	_EKIHKYVDD_					0	0	0			REV__ENSG00000161217|ENST00000431016|PCYT1A	REV__ENSG00000161217|ENST00000431016|PCYT1A	MULTI-MSMS	OvCa99_classI_Rep5	1	573.7904052734375	2	573.793121	1145.57169	-0.64116	-0.00036789	-3.0348	-0.0017414	-3.676	-0.0021093	573.7911851496121	55.004	0.59652	55.004	54.805	55.401	0					32	13	4	0	0	0	0.2422	1	4484	4484		69.628	2.134	1	1308500	+		7519	20693	6069	6079	8612	8612					0.0047252026377009315
EKIHKYVDD	9	Unmodified	_EKIHKYVDD_					0	0	0			REV__ENSG00000161217|ENST00000431016|PCYT1A	REV__ENSG00000161217|ENST00000431016|PCYT1A	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	573.793121	1145.57169	-0.64116	-0.00036789	-3.0348	-0.0017414	-3.676	-0.0021093	573.7911851496121	55.004	0.59652	55.004	54.805	55.401	0	-0.11521	7.7043E-05	NaN	69.628	32	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1308500	+		7520	20693	6069	6079							0.0047252026377009315
EKIHKYVDD	9	Unmodified	_EKIHKYVDD_					0	0	0			REV__ENSG00000161217|ENST00000431016|PCYT1A	REV__ENSG00000161217|ENST00000431016|PCYT1A	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	573.793121	1145.57169	-0.58533	-0.00033586	-4.628	-0.0026555	-5.2133	-0.0029914	573.7903814176985	58.627	0.44788	55.235	54.902	55.35	-3.392	0.11521	-0.0017512	NaN	69.628	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31810	+		7521	20693	6069	6079							0.0047252026377009315
EKIIDGVHLL	10	Unmodified	_EKIIDGVHLL_					0	0	0			REV__nc|ENSG00000108852|Q14168-5|MPP2	REV__nc|ENSG00000108852|Q14168-5|MPP2	MULTI-MSMS	OvCa99_classI_Rep5	1	568.8406372070312	2	568.837331	1135.66011	1.5931	0.00090619	3.3694	0.0019166	4.9624	0.0028228	568.8390639178118	130.34	1.0489	130.34	129.91	130.96	0					65	21	4	0	0	0	0.49558	1	15123	15123		54.776	5.3348	1	771350	+		7522	17766	6070	6080	8613	8613					0.09770560574247611
EKIIKEFIN	9	Unmodified	_EKIIKEFIN_					0	0	0		ENST00000476634.1_1_12:8085578-8088630:-|nuORF;ENST00000486749.5_1_12:8083049-8088630:-|nuORF;ENSG00000059804|ENST00000075120|SLC2A3	ENST00000476634.1_1_12:8085578-8088630:-|nuORF	ENST00000476634.1_1_12:8085578-8088630:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3297119140625	2	567.331882	1132.64921	-2.3399	-0.0013275	-1.3687	-0.0007765	-3.7086	-0.002104	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.51865	1	14716	14716		40.778	1.5253	1	241060			7523	1257	6071	6081	8614	8614					0.0881915819995811
EKIKEIQSGD	10	Unmodified	_EKIKEIQSGD_					0	0	0			REV__nc|ENSG00000196335|Q9BXU1-3|STK31	REV__nc|ENSG00000196335|Q9BXU1-3|STK31	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.7904052734375	2	573.803685	1145.59282	-0.63675	-0.00036537	1.3064	0.00074961	0.66963	0.00038424	573.8042591716847	54.96	0.34592	54.96	54.761	55.107	0					13	7	2	0	0	0	0.026487	1	4484	4484		77.533	20.812	1	332330	+		7524	22811	6072	6082	8615	8615					0.025844855726063543
EKIKELASCH	10	Unmodified	_EKIKELASCH_					0	0	0		chr10:3107309-3109416|217|32.52|0.43|6.25|+|0|PFKP,None|1	chr10:3107309-3109416|217|32.52|0.43|6.25|+|0|PFKP,None|1	chr10:3107309-3109416|217|32.52|0.43|6.25|+|0|PFKP,None|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.3319702148438	2	579.302798	1156.59104	-0.53103	-0.00030763	-1.8541	-0.0010741	-2.3851	-0.0013817	579.3015273523041	73.405	0.3604	73.405	73.276	73.636	0					11	8	2	0	0	0	0.026867	1	7213	7213		35.152	21.015	1	310120			7525	272	6073	6083	8616	8616					0.019011532830063516
EKIKLHEPL	9	Unmodified	_EKIKLHEPL_					0	0	0			REV__ENST00000490113.1_2_9:79002317-79003108:-|nuORF	REV__ENST00000490113.1_2_9:79002317-79003108:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	553.830078125	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.63422	1	12005	12005		27.882	0	1	308210	+		7526	19247	6074	6084	8617	8617					0.10094577919790026
EKILFNLEK	9	Unmodified	_EKILFNLEK_					0	0	0		tr|A0A7D6ZRU1|A0A7D6ZRU1_9CLOTCBSdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05065PE=4SV=1	tr|A0A7D6ZRU1|A0A7D6ZRU1_9CLOTCBSdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05065PE=4SV=1	tr|A0A7D6ZRU1|A0A7D6ZRU1_9CLOTCBSdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05065PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3294677734375	2	567.331882	1132.64921	-3.474	-0.0019709	-0.21845	-0.00012393	-3.6925	-0.0020949	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.66262	1	12306	12306		24.519	0.99649	1	458690			7527	35722	6075	6085	8618	8618					0.0881915819995811
EKILGGEAEQI	11	Unmodified	_EKILGGEAEQI_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa9_classI_Rep4_	4	593.8202514648438	2	593.819335	1185.62412	-0.39168	-0.00023259	-0.009055	-5.377E-06	-0.40073	-0.00023796	593.8192809572217	93.201	0.84476	90.693	90.412	91.257	-2.5072					46	17	4	0	0	0	0.070445	1	8126	8126		134.77	0	1	380760	+		7528	28942;32737	6076	6086	8619	8619					0.03873058606723134
EKILGGEAEQI	11	Unmodified	_EKILGGEAEQI_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	593.819335	1185.62412	0.23211	0.00013783	-0.49299	-0.00029275	-0.26088	-0.00015492	593.8188856669702	91.97	1.4128	90.734	90.326	91.738	-1.2355	0.025076	-0.00029801	NaN	134.77	69	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	192570	+		7529	28942;32737	6076	6086							0.03873058606723134
EKILGGEAEQI	11	Unmodified	_EKILGGEAEQI_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MATCH	OvCa9_classI_Rep3	3		2	593.819335	1185.62412	-1.2528	-0.00074393	0.11104	6.5936E-05	-1.1417	-0.00067799	593.8192887250485	92.662	1.4606	90.7	90.423	91.884	-1.9617	-0.0090465	0.00041936	NaN	134.77	62	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	393540	+		7530	28942;32737	6076	6086							0.03873058606723134
EKILQHSIAL	10	Unmodified	_EKILQHSIAL_					0	0	0			REV__ENST00000488223.5_1_10:74886420-74890658:+|nuORF	REV__ENST00000488223.5_1_10:74886420-74890658:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	576.3475341796875	2	576.342781	1150.67101	2.1666	0.0012487	3.6794	0.0021206	5.846	0.0033693	576.3447740867039	121.6	0.97573	121.6	121.25	122.22	0					62	20	4	0	0	0	0.70152	1	14032	14032		30.318	1.1682	1	597340	+		7531	21177	6077	6087	8620	8620					0.10169962948543798
EKILTIPNT	9	Unmodified	_EKILTIPNT_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23;nc|ENSG00000112282|Q9ULK4-6|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.7877807617188	2	514.802957	1027.59136	0.48986	0.00025218	2.3301	0.0011996	2.82	0.0014518	515.3058708774563	78.992	0.99352	76.652	76.315	77.309	-2.3399					58	19	4	0	0	0	0.027462	1	4197	4197		49.536	10.73	1	42822			7532	2892	6078	6088	8621	8621					0.0786689627452688
EKILTLEEN	9	Unmodified	_EKILTLEEN_					0	0	0			REV__tr|A0A7D6VYD7|A0A7D6VYD7_9CLOTDeoxyguanosinetriphosphatetriphosphohydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16385PE=4SV=1	REV__tr|A0A7D6VYD7|A0A7D6VYD7_9CLOTDeoxyguanosinetriphosphatetriphosphohydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16385PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7970581054688	2	544.795329	1087.5761	-0.24717	-0.00013465	2.8301	0.0015419	2.583	0.0014072	544.7966504313338	68.642	0.95356	68.642	68.315	69.268	0					49	22	3	0	0	0	0.027462	1	6571	6571		49.536	10.73	1	1381200	+		7533	31818	6079	6089	8622	8622					0.03581984686684336
EKILYRLDV	9	Unmodified	_EKILYRLDV_					0	0	0		ENST00000473371.1_1_13:39613176-39613868:+|nuORF;nc|ENSG00000188811|Q5JS37-2|NHLRC3;ENSG00000188811|ENST00000379600|NHLRC3	ENST00000473371.1_1_13:39613176-39613868:+|nuORF	ENST00000473371.1_1_13:39613176-39613868:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.3124389648438	2	574.837331	1147.66011	-1.2183	-0.00070032	0.51976	0.00029877	-0.69854	-0.00040155	575.3399249080371	65.693	0.55914	65.693	65.385	65.945	0					16	13	2	0	0	0	0.027462	1	6028	6028		20.947	4.4738	1	275430			7534	8505	6080	6090	8623	8623					0.09218560574208823
EKINQTEETQ	10	Unmodified	_EKINQTEETQ_					0	0	0		tr|A0A553SMR8|A0A553SMR8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23115PE=4SV=1	tr|A0A553SMR8|A0A553SMR8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23115PE=4SV=1	tr|A0A553SMR8|A0A553SMR8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23115PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	407.2002868652344	3	407.198213	1218.57281	0.55236	0.00022492	2.6472	0.0010779	3.1996	0.0013029	407.19918620698076	109.06	1.3446	107.34	107.02	108.37	-1.7256					69	25	4	0	0	0	0.69073	1	10002	10002		36.318	6.7669	1	238050			7535	33865	6081	6091	8624	8624					-0.02773310157999731
EKINQTEETQ	10	Unmodified	_EKINQTEETQ_					0	0	0		tr|A0A553SMR8|A0A553SMR8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23115PE=4SV=1	tr|A0A553SMR8|A0A553SMR8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23115PE=4SV=1	tr|A0A553SMR8|A0A553SMR8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23115PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	407.198213	1218.57281	1.3362	0.00054412	1.7264	0.00070298	3.0626	0.0012471	407.19881810928257	107.58	1.5169	107.28	106.97	108.49	-0.30836	-0.043142	-0.00048345	NaN	36.318	77	30	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208030			7536	33865	6081	6091							-0.02773310157999731
EKINQTEETQ	10	Unmodified	_EKINQTEETQ_					0	0	0		tr|A0A553SMR8|A0A553SMR8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23115PE=4SV=1	tr|A0A553SMR8|A0A553SMR8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23115PE=4SV=1	tr|A0A553SMR8|A0A553SMR8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23115PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		3	407.198213	1218.57281	0.94656	0.00038544	2.4043	0.00097904	3.3509	0.0013645	407.1990565513419	108.54	1.2358	107.34	107.01	108.24	-1.1978	0.023431	0.00034474	NaN	36.318	65	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220040			7537	33865	6081	6091							-0.02773310157999731
EKIPPQFAQAI	11	Unmodified	_EKIPPQFAQAI_					0	0	0		ENSG00000163376|ENST00000417314|KBTBD8	ENSG00000163376|ENST00000417314|KBTBD8	ENSG00000163376|ENST00000417314|KBTBD8	MSMS	OvCa99_classI_Rep5	1	414.5682067871094	3	414.567801	1240.68157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.113	1	41.113	40.613	41.613	0								0	0	0	0.19383	1	2545	2545		35.496	0.34362	1				7538	6294	6082	6092	8625	8625					0.07085945602943866
EKIQGIVAV	9	Unmodified	_EKIQGIVAV_					0	0	0		tr|A0A7D7A4W4|A0A7D7A4W4_9CLOTLacIfamilyDNA-bindingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_04830PE=4SV=1	tr|A0A7D7A4W4|A0A7D7A4W4_9CLOTLacIfamilyDNA-bindingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_04830PE=4SV=1	tr|A0A7D7A4W4|A0A7D7A4W4_9CLOTLacIfamilyDNA-bindingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_04830PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.79327392578125	2	478.792392	955.570232	0.15994	7.658E-05	-1.1093	-0.0005311	-0.94931	-0.00045452	478.7917117307407	83.32	2.5938	80.657	80.145	82.738	-2.6629					118	53	4	0	0	0	0.35444	1	6951	6951		56.721	0	1	1612900			7539	36156	6083	6093	8626	8626					0.09066930965650499
EKITKSVKL	9	Unmodified	_EKITKSVKL_					0	0	0			REV__tr|A0A7D6VUI6|A0A7D6VUI6_9CLOTPTSsugartransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_07495PE=4SV=1	REV__tr|A0A7D6VUI6|A0A7D6VUI6_9CLOTPTSsugartransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_07495PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.3067626953125	2	523.334424	1044.6543	-0.53898	-0.00028207	3.9547	0.0020696	3.4157	0.0017876	523.3363597283842	116.16	0.94131	116.04	115.69	116.63	-0.11777					32	18	2	0	0	0	0.027462	1	11163	11163		29.15	12.676	1	47641	+		7540	31680	6084	6094	8627	8627					0.13375462062572296
EKIVETHTE	9	Unmodified	_EKIVETHTE_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8093872070312	2	543.277303	1084.54005	0.1376	7.4754E-05	-0.28151	-0.00015294	-0.14391	-7.8184E-05	543.2769129236596	62.441	0.6513	62.441	62.165	62.816	0					36	15	3	0	0	0	0.027455	1	5563	5563		42.396	0	1	1063500	+		7541	28942	6085	6095	8628	8628					0.001165275098173879
EKIVKGGRHIT	11	Unmodified	_EKIVKGGRHIT_					0	0	0			REV__ENSG00000091664|ENST00000263160|SLC17A6	REV__ENSG00000091664|ENST00000263160|SLC17A6	MULTI-MSMS	OvCa99_classI_Rep5	1	619.3736572265625	2	619.372404	1236.73025	0.16264	0.00010074	-1.2197	-0.00075544	-1.057	-0.0006547	619.3716070406476	162.55	0.27477	162.55	162.38	162.65	0					12	7	2	0	0	0	0.71582	1	19062	19062		24.232	1.6522	1	397570	+		7542	17255	6086	6096	8629	8629					0.12135858962687962
EKIVKPGLIL	10	Unmodified	_EKIVKPGLIL_					0	0	0			REV__ENSG00000125999|ENST00000253354|BPIFB1	REV__ENSG00000125999|ENST00000253354|BPIFB1	MULTI-MSMS	OvCa99_classI_Rep5	1	555.3682861328125	2	555.368267	1108.72198	0.40167	0.00022308	-2.4382	-0.0013541	-2.0365	-0.001131	555.3668276809369	63.059	1.2732	63.059	62.541	63.814	0					71	31	4	0	0	0	0.44431	1	5635	5635		62.107	5.3864	1	2239700	+		7543	18765	6087	6097	8630	8630					0.17196911993369213
EKIVPLPISDK	11	Unmodified	_EKIVPLPISDK_					0	0	0			REV__nc|ENSG00000170471|Q86X10-3|RALGAPB	REV__nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8687133789062	2	619.871371	1237.72819	-3.1788	-0.0019704	0.11399	7.0661E-05	-3.0648	-0.0018998	619.8711859647292	147.21	3.9856	146.98	144.83	148.82	-0.22696					207	79	4	0	0	0	0.71321	1	15024	15024		25.126	3.1661	1	163200	+		7544	21542	6088	6098	8631	8631					0.11883385434202864
EKIWFYIY	8	Unmodified	_EKIWFYIY_					0	0	0		tr|A0A553SQY5|A0A553SQY5_NIACIThioredoxinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07495PE=4SV=1;tr|A0A553SQD3|A0A553SQD3_NIACIThioredoxinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07545PE=4SV=1	tr|A0A553SQY5|A0A553SQY5_NIACIThioredoxinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07495PE=4SV=1;tr|A0A553SQD3|A0A553SQD3_NIACIThioredoxinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07545PE=4SV=1	tr|A0A553SQD3|A0A553SQD3_NIACIThioredoxinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07545PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	582.3009643554688	2	581.302593	1160.59063	-0.54131	-0.00031466	0.25297	0.00014705	-0.28834	-0.00016761	581.8030415525292	109.68	0.98481	108.06	107.43	108.41	-1.6274					26	18	2	0	0	0	0.028476	1	10050	10050		38.806	9.6361	1	27642			7545	34209;34148	6089	6099	8632	8632					0.016761016254804417
EKIYDKIENI	10	Unmodified	_EKIYDKIENI_					0	0	0			REV__tr|A0A7D7A384|A0A7D7A384_9CLOTPyrroline-5-carboxylatereductaseOS=ClostridiumintestinaleOX=36845GN=proCPE=3SV=1	REV__tr|A0A7D7A384|A0A7D7A384_9CLOTPyrroline-5-carboxylatereductaseOS=ClostridiumintestinaleOX=36845GN=proCPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	422.2322998046875	3	422.230966	1263.67107	0.17065	7.2055E-05	-0.50018	-0.00021119	-0.32952	-0.00013914	422.23074726144904	51.23	1.7919	51.23	50.949	52.741	0					119	41	6	0	0	0	0.1266	1	3952	3952		106.88	7.8673	1	23415000	+		7546	32572	6090	6100	8633	8633					0.04977918157874228
EKIYEGVL	8	Unmodified	_EKIYEGVL_					0	0	0		tr|A0A553SLT1|A0A553SLT1_NIACIGlycosylhydrolasefamily88OS=NialliacirculansOX=1397GN=CEQ21_21275PE=4SV=1	tr|A0A553SLT1|A0A553SLT1_NIACIGlycosylhydrolasefamily88OS=NialliacirculansOX=1397GN=CEQ21_21275PE=4SV=1	tr|A0A553SLT1|A0A553SLT1_NIACIGlycosylhydrolasefamily88OS=NialliacirculansOX=1397GN=CEQ21_21275PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	475.7651062011719	2	475.7633	949.512048	0.2852	0.00013569	1.4783	0.00070334	1.7635	0.00083903	475.76371227977637	58.179	0.58848	58.179	57.984	58.572	0					32	13	4	0	0	0	0.62934	1	4932	4932		57.811	6.6186	1	1522200			7547	33760	6091	6101	8634	8634					0.03527249320381998
EKKDHEKITAL	11	Unmodified	_EKKDHEKITAL_					0	0	0			REV__tr|A0A7D6ZXL1|A0A7D6ZXL1_9CLOTCarbamoylphosphatesynthaselargechainOS=ClostridiumintestinaleOX=36845GN=carBPE=3SV=1	REV__tr|A0A7D6ZXL1|A0A7D6ZXL1_9CLOTCarbamoylphosphatesynthaselargechainOS=ClostridiumintestinaleOX=36845GN=carBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	437.9132385253906	3	437.913748	1310.71942	0.19985	8.7516E-05	-0.47884	-0.00020969	-0.27899	-0.00012217	437.91351765663677	67.362	1.7287	64.701	64.248	65.977	-2.661					108	34	5	0	0	0	0.66539	1	5274	5274		38.714	3.5359	1	600720	+		7548	32336	6092	6102	8635	8635					0.07648411797777044
EKKEKEEET	9	Unmodified	_EKKEKEEET_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.8042602539062	2	575.285325	1148.5561	-1.223	-0.00070355	0.28646	0.0001648	-0.9365	-0.00053876	575.2863412734573	81.496	0.49107	78.785	78.494	78.985	-2.7106					16	9	3	0	0	0	0.027462	1	6669	6669		32.812	7.2384	1	26944			7549	4452	6093	6103	8636	8636					-0.012238110439511729
EKKEKEEET	9	Unmodified	_EKKEKEEET_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	575.285325	1148.5561	-0.41001	-0.00023587	-5.7507	-0.0033083	-6.1608	-0.0035442	575.7828861373554	80.708	0.15014	79.013	78.917	79.067	-1.6951	0.11396	-0.0044966	NaN	25.574	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5706.8			7550	4452	6093	6103							-0.012238110439511729
EKKENAKI	8	Unmodified	_EKKENAKI_					0	0	0			REV__tr|A0A553SLD4|A0A553SLD4_NIACIHDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20450PE=4SV=1	REV__tr|A0A553SLD4|A0A553SLD4_NIACIHDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20450PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.2784729003906	2	480.279649	958.544745	2.1214	0.0010189	-0.18328	-8.8027E-05	1.9381	0.00093084	480.27949390902126	80.57	0.89249	80.57	80.314	81.206	0					32	20	2	0	0	0	0.028476	1	8290	8290		40.778	4.3314	1	615040	+		7551	30212	6094	6104	8637	8637					0.06381456443239131
EKKFLKKTT	9	Unmodified	_EKKFLKKTT_					0	0	0		ENST00000371627.4_1_10:93615407-93619233:+|nuORF	ENST00000371627.4_1_10:93615407-93619233:+|nuORF	ENST00000371627.4_1_10:93615407-93619233:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	561.8461303710938	2	561.847699	1121.68084	-3.2197	-0.001809	-0.49496	-0.00027809	-3.7146	-0.002087	561.8472802195274	152.47	1.17	152.24	151.83	153	-0.22697					70	23	4	0	0	0	0.61208	1	15500	15500		30.504	2.6214	1	142980			7552	10963	6095	6105	8638	8638					0.12487150953870696
EKKFLKKTT	9	Unmodified	_EKKFLKKTT_					0	0	0		ENST00000371627.4_1_10:93615407-93619233:+|nuORF	ENST00000371627.4_1_10:93615407-93619233:+|nuORF	ENST00000371627.4_1_10:93615407-93619233:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.8444213867188	2	561.847699	1121.68084	-2.5142	-0.0014126	-1.0339	-0.00058092	-3.5482	-0.0019935	561.8469845001015	152.99	1.31	151.56	151.24	152.55	-1.4351					96	32	4	0	0	0	0.69123	1	15172	15172		20.947	0.95016	1	225430			7553	10963	6095	6105	8639	8639					0.12487150953870696
EKKGAETLR	9	Unmodified	_EKKGAETLR_					0	0	0			REV__tr|A0A7D6ZS77|A0A7D6ZS77_9CLOTPadRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_06675PE=4SV=1	REV__tr|A0A7D6ZS77|A0A7D6ZS77_9CLOTPadRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_06675PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.3120727539062	2	516.29583	1030.57711	-0.84946	-0.00043857	0.77818	0.00040177	-0.071285	-3.6804E-05	516.2962981313632	25.317	0.20024	25.317	25.192	25.392	0					5	3	2	0	0	0	0.027462	1	552	552		46.457	5.6786	1	14949	+		7554	32180	6096	6106	8640	8640					0.06304243846238933
EKKGLRWR	8	Unmodified	_EKKGLRWR_					0	0	0			REV__chr19:13037502-13073047|91|10.3|0.2|5.67|+|2|TE_info:L3b,L3b_dup9327,CR1,LINE,donor,+,13037336,13037502|None,NFIX|2	REV__chr19:13037502-13073047|91|10.3|0.2|5.67|+|2|TE_info:L3b,L3b_dup9327,CR1,LINE,donor,+,13037336,13037502|None,NFIX|2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.2969360351562	2	536.82235	1071.63015	-0.67056	-0.00035997	-1.5376	-0.00082541	-2.2081	-0.0011854	536.8217661170445	61.511	0.70657	58.054	57.816	58.523	-3.4577					33	14	3	0	0	0	0.028476	1	4267	4267		17.365	0	1	190650	+		7555	15964	6097	6107	8641	8641					0.09719666419550776
EKKGPNRK	8	Unmodified	_EKKGPNRK_					0	0	0			REV__ENST00000468646.6_2_3:72109107-72109221:-|nuORF	REV__ENST00000468646.6_2_3:72109107-72109221:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	478.7855529785156	2	478.785433	955.556313	-2.4635	-0.0011795	2.3243	0.0011128	-0.13927	-6.6679E-05	478.7864521794397	145.79	1.5385	145.57	144.98	146.52	-0.22696					81	30	4	0	0	0	0.73938	1	14742	14742		31.955	0	1	230950	+		7556	26231	6098	6108	8642	8642					0.0767569825721921
EKKIHKTSR	9	Unmodified	_EKKIHKTSR_					0	0	0		nc|ENSG00000121210|A2VDJ0-3|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L;ENSG00000121210|ENST00000409959|TMEM131L;nc|ENSG00000121210|A2VDJ0-6|TMEM131L;nc|ENSG00000121210|A2VDJ0-2|TMEM131L	nc|ENSG00000121210|A2VDJ0-3|TMEM131L	nc|ENSG00000121210|A2VDJ0-3|TMEM131L	MULTI-MSMS	OvCa99_classI_Rep5	1	563.8391723632812	2	563.838197	1125.66184	-0.04754	-2.6805E-05	-0.51732	-0.00029169	-0.56486	-0.00031849	563.8379269843244	54.649	0.89226	54.649	54.422	55.315	0					63	20	4	0	0	0	0.46356	1	4439	4439		45.972	4.5456	1	6013900			7557	3473	6099	6109	8643	8643					0.10403614382857995
EKKIKDGE	8	Unmodified	_EKKIKDGE_					0	0	0		tr|A0A7D6VYU4|A0A7D6VYU4_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17860PE=4SV=1	tr|A0A7D6VYU4|A0A7D6VYU4_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17860PE=4SV=1	tr|A0A7D6VYU4|A0A7D6VYU4_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17860PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	473.7643737792969	2	473.763832	945.513111	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.004	1	27.004	26.504	27.504	0								0	0	0	0.30129	1	757	757		35.618	1.4457	1				7558	35339	6100	6110	8644	8644					0.038174636892904346
EKKIYPIV	8	Unmodified	_EKKIYPIV_					0	0	0			REV__ENSG00000212747|ENST00000391440|RTL8B	REV__ENSG00000212747|ENST00000391440|RTL8B	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.78326416015625	2	495.305136	988.595718	-1.0868	-0.0005383	-1.8219	-0.00090241	-2.9087	-0.0014407	495.30404535136495	34.825	0.46583	34.825	34.586	35.052	0					16	9	3	0	0	0	0.028476	1	1723	1723		27.882	0	1	96383	+		7559	19214	6101	6111	8645	8645					0.10096405488081928
EKKKIAQTL	9	Unmodified	_EKKKIAQTL_					0	0	0			REV__ENSG00000089048|ENST00000617257|ESF1	REV__ENSG00000089048|ENST00000617257|ESF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.3250732421875	2	529.832049	1057.64954	0.12328	6.5319E-05	-0.71927	-0.00038109	-0.59598	-0.00031577	529.831591228854	36.893	1.0963	34	33.745	34.841	-2.8925					33	21	3	0	0	0	0.027462	1	1354	1354		19.104	0	1	48621	+		7560	17195	6102	6112	8646	8646					0.12302577919808755
EKKKKKNI	8	Unmodified	_EKKKKKNI_					0	0	0			REV__SVA_C_dup104|chr4:48291729-48293365:+|1.5948730950857304|0.4994645192076182|1.67|429.0|15|1|sense	REV__SVA_C_dup104|chr4:48291729-48293365:+|1.5948730950857304|0.4994645192076182|1.67|429.0|15|1|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.7873229980469	2	508.334759	1014.65496	-1.4587	-0.00074153	0.49973	0.00025403	-0.95901	-0.0004875	508.33517273444977	51.45	0.64285	48.637	48.403	49.046	-2.8129					14	12	2	0	0	0	0.028476	1	3348	3348		29.15	4.9468	1	11799	+		7561	29471	6103	6113	8647	8647					0.14822301502283608
EKKKKKNI	8	Unmodified	_EKKKKKNI_					0	0	0			REV__SVA_C_dup104|chr4:48291729-48293365:+|1.5948730950857304|0.4994645192076182|1.67|429.0|15|1|sense	REV__SVA_C_dup104|chr4:48291729-48293365:+|1.5948730950857304|0.4994645192076182|1.67|429.0|15|1|sense	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	508.334759	1014.65496	-0.47133	-0.00023959	-1.2672	-0.00064417	-1.7386	-0.00088377	508.33405821565646	51.947	0.45504	48.774	48.573	49.028	-3.1734	0.068359	-0.00072178	NaN	37.159	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12354	+		7562	29471	6103	6113							0.14822301502283608
EKKKLEAFI	9	Unmodified	_EKKKLEAFI_					0	0	0			REV__nc|ENSG00000171595|Q9GZS0-2|DNAI2	REV__nc|ENSG00000171595|Q9GZS0-2|DNAI2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.9623413085938	2	553.334424	1104.6543	-0.084005	-4.6483E-05	-0.53365	-0.00029529	-0.61765	-0.00034177	553.3339012130328	83.313	1.0222	80.65	80.145	81.167	-2.6629					30	20	2	0	0	0	0.027461	1	6887	6887		40.778	7.9657	1	55208	+		7563	21628	6104	6114	8648	8648					0.10615462062560255
EKKKLEAFI	9	Unmodified	_EKKKLEAFI_					0	0	0			REV__nc|ENSG00000171595|Q9GZS0-2|DNAI2	REV__nc|ENSG00000171595|Q9GZS0-2|DNAI2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	553.334424	1104.6543	-1.4192	-0.00078528	0.37914	0.00020979	-1.04	-0.00057549	553.3342417414925	82.751	0.99038	80.455	80.138	81.129	-2.2963	-0.052282	0.0011253	NaN	32.812	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49436	+		7564	21628	6104	6114							0.10615462062560255
EKKKNIKIP	9	Unmodified	_EKKKNIKIP_					0	0	0		tr|A0A7D7A4G8|A0A7D7A4G8_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01670PE=4SV=1	tr|A0A7D7A4G8|A0A7D7A4G8_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01670PE=4SV=1	tr|A0A7D7A4G8|A0A7D7A4G8_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01670PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.79833984375	2	549.355691	1096.69683	2.3108	0.0012695	2.2015	0.0012094	4.5123	0.0024789	549.3564421493137	84.533	0.49699	84.533	84.303	84.8	0					18	11	2	0	0	0	0.027462	1	8831	8831		51.335	5.3632	1	555590			7565	36144	6105	6115	8649	8649					0.15234857190785078
EKKKNITLDC	10	Unmodified	_EKKKNITLDC_					0	0	0		nc|ENSG00000135424|Q13683-13|ITGA7;nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-3|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	MULTI-MSMS	OvCa99_classI_Rep5	1	596.3235473632812	2	596.323731	1190.63291	1.1786	0.00070286	-1.9693	-0.0011743	-0.79063	-0.00047147	596.322429748079	155.89	3.621	155.89	155.07	158.69	0					175	72	3	0	0	0	0.20536	1	18265	18265		93.598	23.97	1	345700			7566	4377	6106	6116	8650	8650					0.04521708971560656
EKKKQANL	8	Unmodified	_EKKKQANL_					0	0	0			REV__tr|A0A553SHN9|A0A553SHN9_NIACILargeribosomalsubunitproteinbL9OS=NialliacirculansOX=1397GN=rplIPE=3SV=1	REV__tr|A0A553SHN9|A0A553SHN9_NIACILargeribosomalsubunitproteinbL9OS=NialliacirculansOX=1397GN=rplIPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.274658203125	2	479.787641	957.56073	0.19408	9.3118E-05	-1.4714	-0.00070595	-1.2773	-0.00061284	479.78711595413404	75.653	1.2049	72.714	72.018	73.222	-2.9389					46	24	3	0	0	0	0.028476	1	5966	5966		45.952	7.1458	1	194520	+		7567	29822	6107	6117	8651	8651					0.0802516268013278
EKKKRREPSI	10	Unmodified	_EKKKRREPSI_					0	0	0		ENST00000279392.7_1_16:30006934-30007012:-|nuORF	ENST00000279392.7_1_16:30006934-30007012:-|nuORF	ENST00000279392.7_1_16:30006934-30007012:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	424.2576904296875	3	424.257849	1269.75172	-1.0833	-0.0004596	1.0427	0.00044237	-0.040602	-1.7226E-05	424.2582278417872	54.36	1.6434	51.546	51.275	52.918	-2.8139					88	32	4	0	0	0	0.69928	1	3726	3726		30.569	3.5215	1	452900			7568	10039	6108	6118	8652	8652					0.12763243991435047
EKKLLLETV	9	Unmodified	_EKKLLLETV_					0	0	0			REV__nc|ENSG00000138741|Q13507-3|TRPC3	REV__nc|ENSG00000138741|Q13507-3|TRPC3	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.8392333984375	2	536.834257	1071.65396	-1.4387	-0.00077233	1.2243	0.00065725	-0.21436	-0.00011508	536.8347283772092	94.848	1.3557	92.38	92.11	93.465	-2.4685					60	26	3	0	0	0	0.2077	1	8333	8333		75.043	0	1	298260	+		7569	19566	6109	6119	8653	8653					0.12100042342717643
EKKNLEKIK	9	Unmodified	_EKKNLEKIK_					0	0	0			REV__ENST00000442406.5_1_3:184038690-184052693:+|nuORF	REV__ENST00000442406.5_1_3:184038690-184052693:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.3451538085938	2	565.350606	1128.68666	1.7127	0.00096827	-1.8693	-0.0010568	-0.15659	-8.8526E-05	565.3493549103057	32.977	1.0911	30.281	30.053	31.144	-2.6954					50	21	4	0	0	0	0.42576	1	842	842		49.536	1.5765	1	162860	+		7570	18208	6110	6120	8654	8654					0.1274624946554468
EKKNLEKIK	9	Unmodified	_EKKNLEKIK_					0	0	0			REV__ENST00000442406.5_1_3:184038690-184052693:+|nuORF	REV__ENST00000442406.5_1_3:184038690-184052693:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.8233032226562	2	565.350606	1128.68666	1.7127	0.00096827	-1.8693	-0.0010568	-0.15659	-8.8526E-05	565.3493549103057	32.977	1.0911	30.281	30.053	31.144	-2.6954					50	21	4	0	0	0	0.027432	1	919	919		58.23	5.2932	1	162860	+		7571	18208	6110	6120	8655	8655					0.1274624946554468
EKKNLEKIK	9	Unmodified	_EKKNLEKIK_					0	0	0			REV__ENST00000442406.5_1_3:184038690-184052693:+|nuORF	REV__ENST00000442406.5_1_3:184038690-184052693:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	565.350606	1128.68666	-0.92347	-0.00052208	0.70822	0.00040039	-0.21525	-0.00012169	565.350858982837	33.353	0.69878	30.643	30.47	31.168	-2.7097	0.18102	0.0020147	NaN	49.536	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53906	+		7572	18208	6110	6120							0.1274624946554468
EKKNQLIAW	9	Unmodified	_EKKNQLIAW_					0	0	0			REV__ENSG00000144481|ENST00000324695|TRPM8	REV__ENSG00000144481|ENST00000324695|TRPM8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.8253784179688	2	565.321848	1128.62914	1.7154	0.00096977	-4.0484	-0.0022886	-2.3329	-0.0013189	565.3193880674685	32.977	0.64713	30.282	30.053	30.7	-2.6954					23	12	3	0	0	0	0.027459	1	887	887		52.937	6.9645	1	59497	+		7573	19914	6111	6121	8656	8656					0.06997407259973443
EKKPPRPPK	9	Unmodified	_EKKPPRPPK_					0	0	0		ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.862548828125	2	538.832383	1075.65021	2.5202	0.001358	3.4725	0.0018711	5.9927	0.0032291	538.8339959461761	134.11	0.19812	132.58	132.49	132.69	-1.5257					6	3	2	0	0	0	0.027462	1	12965	12965		29.15	8.2026	1	10184			7574	3185	6112	6122	8657	8657					0.11541417359512707
EKKPSESDL	9	Unmodified	_EKKPSESDL_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3;DNAH3|p.T2544Ifs*7|1|0.16|ENSG00000158486|chr16:20985111-20985112|-/A|frameshift_variant;nc|ENSG00000158486|Q8TD57-3|DNAH3;DNAH3|p.L2088Pfs*41|1|0.69|ENSG00000158486|chr16:21000370-21000382|GGAAGGTGGAGAA/-|frameshift_variant;DNAH3|p.L917Ffs*10|1|0.04|ENSG00000158486|chr16:21086975-21086975|C/-|frameshift_variant;DNAH3|p.I708Mfs*22|1|0.08|ENSG00000158486|chr16:21106650-21106650|G/-|frameshift_variant;nc|ENSG00000158486|Q8TD57-2|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7739868164062	2	516.764029	1031.5135	-0.41689	-0.00021544	0.63071	0.00032593	0.21381	0.00011049	516.7639152059135	65.298	0.3542	65.298	65.072	65.426	0					11	8	2	0	0	0	0.027418	1	6000	6000		52.937	6.9645	1	123570			7575	5956	6113	6123	8658	8658					-0.0009916138151311316
EKKQEQED	8	Unmodified	_EKKQEQED_					0	0	0		ENSG00000128408|ENST00000614167|RIBC2	ENSG00000128408|ENST00000614167|RIBC2	ENSG00000128408|ENST00000614167|RIBC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.7687377929688	2	517.24346	1032.47237	2.4793	0.0012824	-2.975	-0.0015388	-0.49563	-0.00025636	517.2415276606529	89.37	0.77232	89.37	89.119	89.891	0					41	18	3	0	0	0	0.028476	1	9558	9558		49.442	0	1	966550			7576	3880	6114	6124	8659	8659					-0.04256922420995579
EKKRESTLSN	10	Unmodified	_EKKRESTLSN_					0	0	0			REV__ENSG00000109576|ENST00000337664|AADAT	REV__ENSG00000109576|ENST00000337664|AADAT	MULTI-MSMS	OvCa99_classI_Rep5	1	596.8233642578125	2	596.320034	1190.62551	1.9818	0.0011818	3.2937	0.0019641	5.2754	0.0031458	596.3218688220701	128.19	2.054	128.19	127.76	129.82	0					101	43	3	0	0	0	0.64697	1	14930	14930		36.447	4.4919	1	599050	+		7577	17935	6115	6125	8660	8660					0.03782692695494916
EKKSDKGKP	9	Unmodified	_EKKSDKGKP_					0	0	0			REV__ENST00000494618.1_1_2:232322276-232325237:-|nuORF	REV__ENST00000494618.1_1_2:232322276-232325237:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7732238769531	2	508.790381	1015.56621	-0.63618	-0.00032368	-0.69279	-0.00035248	-1.329	-0.00067616	509.2898541128445	51.988	0.3745	51.988	51.708	52.083	0					12	8	2	0	0	0	0.027462	1	4061	4061		27.882	0	1	171670	+		7578	18215	6116	6126	8661	8661					0.05904841471954114
EKKSEEQLL	9	Unmodified	_EKKSEEQLL_					0	0	0			REV__nc|ENSG00000124574|Q5T3U5-2|ABCC10	REV__nc|ENSG00000124574|Q5T3U5-2|ABCC10	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.8104248046875	2	552.300778	1102.587	0.30084	0.00016615	-0.82718	-0.00045685	-0.52634	-0.0002907	552.3003494551845	66.76	0.52399	66.76	66.531	67.055	0					19	7	3	0	0	0	0.027411	1	6246	6246		70.816	15.312	1	1159900	+		7579	18695	6117	6127	8662	8662					0.03981387060957786
EKKTKLVV	8	Unmodified	_EKKTKLVV_					0	0	0		nc|ENSG00000184368|Q96T17-5|MAP7D2;nc|ENSG00000184368|Q96T17-4|MAP7D2;nc|ENSG00000184368|Q96T17|MAP7D2;ENSG00000184368|ENST00000379643|MAP7D2	nc|ENSG00000184368|Q96T17-5|MAP7D2	nc|ENSG00000184368|Q96T17-5|MAP7D2	MULTI-SECPEP	OvCa9_classI_Rep2	2	473.7637634277344	2	472.810585	943.606617	-1.0377	-0.00049061	1.2364	0.00058456	0.1987	9.3947E-05	472.81093668274	55.677	0.74261	52.873	52.582	53.324	-2.804					17	14	2	0	0	0	0.028476	1	3925	3925		24.203	7.7296	1	10077			7580	8152	6118	6128	8663	8663					0.1325580786236742
EKKTMRKL	8	Unmodified	_EKKTMRKL_					0	0	0		DACH2|p.K526M|1|0.21|ENSG00000126733|chrX:86814727-86814727|A/T|missense_variant	DACH2|p.K526M|1|0.21|ENSG00000126733|chrX:86814727-86814727|A/T|missense_variant	DACH2|p.K526M|1|0.21|ENSG00000126733|chrX:86814727-86814727|A/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	517.3125610351562	2	517.312969	1032.61138	-0.53716	-0.00027788	-2.8037	-0.0014504	-3.3409	-0.0017283	517.3113131064438	66.497	0.64845	66.497	66.25	66.898	0					27	15	2	0	0	0	0.55617	1	6172	6172		71.877	5.4482	1	1818100			7581	708	6119	6129	8664	8664					0.09638368733476455
EKKVPAPVPK	10	Unmodified	_EKKVPAPVPK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.P12974Lfs*4|1|0.05|ENSG00000155657|chr2:178631204-178631205|-/GTACA|frameshift_variant;TTN|p.E11597Rfs*5|1|0.5|ENSG00000155657|chr2:178651954-178651954|A/-|frameshift_variant;TTN|p.R11195Efs*5|1|0.15|ENSG00000155657|chr2:178674318-178674318|A/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OvCa9_classI_Rep2	2	546.8406372070312	2	546.842416	1091.67028	-4.8246	-0.0026383	1.033	0.00056488	-3.7916	-0.0020734	546.8429110027589	158.57	1.287	158.34	158.06	159.35	-0.22697					77	26	5	0	0	0	0.71192	1	16098	16098		29.15	2.4566	1	487190			7582	5793;36288	6120	6130	8665	8665					0.12811168299458586
EKKVPPPGLK	10	Unmodified	_EKKVPPPGLK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.P12974Lfs*4|1|0.05|ENSG00000155657|chr2:178631204-178631205|-/GTACA|frameshift_variant;TTN|p.E11597Rfs*5|1|0.5|ENSG00000155657|chr2:178651954-178651954|A/-|frameshift_variant;TTN|p.R11195Efs*5|1|0.15|ENSG00000155657|chr2:178674318-178674318|A/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OvCa9_classI_Rep3	3	546.8399658203125	2	546.842416	1091.67028	-7.0439	-0.0038519	3.2968	0.0018028	-3.7471	-0.0020491	546.8440760274939	158.88	1.6198	157.61	157.26	158.88	-1.267					96	31	5	0	0	0	0.73378	1	13725	13725		26.693	1.1189	1	890150			7583	5793;36288	6121	6131	8666	8666					0.12811168299458586
EKLAAIQPK	9	Unmodified	_EKLAAIQPK_					0	0	0			REV__nc|ENSG00000001626|P13569-2|CFTR	REV__nc|ENSG00000001626|P13569-2|CFTR	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.30743408203125	2	499.305667	996.596781	0.40651	0.00020297	3.546	0.0017705	3.9525	0.0019735	499.3073070220826	161.25	0.85844	161.25	160.91	161.77	0					27	16	2	0	0	0	0.027462	1	18916	18916		27.882	0	1	45361	+		7584	16362	6122	6132	8667	8667					0.09834619856985682
EKLAELRKL	9	Unmodified	_EKLAELRKL_					0	0	0		HYOU1|p.Q990Rfs*5|1|0.05|ENSG00000149428|chr11:119045626-119045626|T/-|frameshift_variant;ENSG00000149428|ENST00000617285|HYOU1;ENST00000527738.1_1_11:118918433-118918792:-|nuORF	HYOU1|p.Q990Rfs*5|1|0.05|ENSG00000149428|chr11:119045626-119045626|T/-|frameshift_variant	HYOU1|p.Q990Rfs*5|1|0.05|ENSG00000149428|chr11:119045626-119045626|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	550.3466796875	2	550.345323	1098.67609	2.1642	0.0011911	-0.15168	-8.3477E-05	2.0125	0.0011076	550.3450984485111	86.82	1.2429	86.82	86.511	87.754	0					76	29	4	0	0	0	0.084918	1	9167	9167		101.25	2.6706	1	8079600			7585	5458	6123	6133	8668	8668					0.1307026681113257
EKLAELSLFG	10	Unmodified	_EKLAELSLFG_					0	0	0			REV__nc|ENSG00000170471|Q86X10-3|RALGAPB	REV__nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.79541015625	2	553.808239	1105.60193	1.1357	0.00062894	1.2803	0.00070905	2.416	0.001338	553.8088927375692	101.46	1.0151	101.46	100.98	102	0					33	15	3	0	0	0	0.026734	1	11306	11306		47.657	0	1	677830	+		7586	21542	6124	6134	8669	8669					0.05334878928942999
EKLAKNKQK	9	Unmodified	_EKLAKNKQK_					0	0	0		nc|ENSG00000289694|P60953-1|CDC42;ENSG00000070831|ENST00000656825|CDC42	nc|ENSG00000289694|P60953-1|CDC42	nc|ENSG00000289694|P60953-1|CDC42	MSMS	OvCa9_classI_Rep2	2	543.8357543945312	2	543.835123	1085.65569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.32	1	27.611	27.111	28.111	-2.7097								0	0	0	0.17131	1	815	815		47.657	1.6851	1				7587	1438	6125	6135	8670	8670					0.11629096151318663
EKLAKQSASLH	11	Unmodified	_EKLAKQSASLH_					0	0	0			REV__ENST00000569997.1_1_16:85838427-85838718:+|nuORF	REV__ENST00000569997.1_1_16:85838427-85838718:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	606.8685913085938	2	606.340769	1210.66699	-0.44266	-0.0002684	1.3927	0.00084445	0.95004	0.00057605	606.3416280680088	28.764	0.49907	28.764	28.588	29.087	0					14	9	2	0	0	0	0.025624	1	996	996		22.58	0	1	35025	+		7588	27732	6126	6136	8671	8671					0.07007873454813307
EKLARHMTFL	10	Oxidation (M)	_EKLARHM(Oxidation (M))TFL_		EKLARHM(1)TFL		EKLARHM(65)TFL	0	0	1		tr|A0A553SKJ7|A0A553SKJ7_NIACIFructose-1,6-bisphosphataseclass3OS=NialliacirculansOX=1397GN=fbpPE=3SV=1	tr|A0A553SKJ7|A0A553SKJ7_NIACIFructose-1,6-bisphosphataseclass3OS=NialliacirculansOX=1397GN=fbpPE=3SV=1	tr|A0A553SKJ7|A0A553SKJ7_NIACIFructose-1,6-bisphosphataseclass3OS=NialliacirculansOX=1397GN=fbpPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	631.3426513671875	2	631.339715	1260.66488	0.71484	0.0004513	4.2183	0.0026632	4.9331	0.0031145	631.3423962446483	97.726	1.2637	95.347	95.065	96.328	-2.3786					55	24	4	0	0	0	0.42082	1	8680	8680		65.465	14.273	1	300090			7589	33622	6127	6137	8672	8672		742			0.044971214453426
EKLARRRAL	9	Unmodified	_EKLARRRAL_					0	0	0		nc|ENSG00000170473|Q9BRP8-2|PYM1;ENSG00000170473|ENST00000408946|PYM1	nc|ENSG00000170473|Q9BRP8-2|PYM1	nc|ENSG00000170473|Q9BRP8-2|PYM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.7957763671875	2	556.854181	1111.69381	2.7174	0.0015132	1.3852	0.00077136	4.1027	0.0022846	556.854995790092	84.651	0.41067	84.651	84.431	84.841	0					21	9	3	0	0	0	0.027462	1	8851	8851		56.721	3.7844	1	622060			7590	7108	6128	6138	8673	8673					0.14243026856661345
EKLEHSIED	9	Unmodified	_EKLEHSIED_					0	0	0		tr|A0A7D6ZXY3|A0A7D6ZXY3_9CLOTANTARdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00985PE=4SV=1	tr|A0A7D6ZXY3|A0A7D6ZXY3_9CLOTANTARdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00985PE=4SV=1	tr|A0A7D6ZXY3|A0A7D6ZXY3_9CLOTANTARdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00985PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.2734985351562	2	550.266936	1098.51932	-0.12013	-6.6101E-05	3.5501	0.0019535	3.43	0.0018874	550.268818079601	70.905	1.889	70.905	70.603	72.492	0					74	46	4	0	0	0	0.027426	1	6936	6936		66.429	9.7082	1	8286900			7591	35898	6129	6139	8674	8674					-0.026000628698284345
EKLFQGQLV	9	Unmodified	_EKLFQGQLV_					0	0	0		ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.3008422851562	2	531.303124	1060.5917	-1.2096	-0.00064265	-2.5892	-0.0013756	-3.7987	-0.0020183	531.3016407849306	39.615	1.0538	36.677	36.384	37.438	-2.938					45	20	3	0	0	0	0.48324	1	1649	1649		44.117	1.7207	1	210290			7592	6201	6130	6140	8675	8675					0.06382315994369492
EKLFSNAVIL	10	Unmodified	_EKLFSNAVIL_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3298950195312	2	567.331882	1132.64921	-3.474	-0.0019709	-0.21845	-0.00012393	-3.6925	-0.0020949	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.71173	1	12311	12311		29.17	3.596	1	458690	+		7593	22537	6131	6141	8676	8676					0.0881915819995811
EKLHIGKI	8	Unmodified	_EKLHIGKI_					0	0	0			REV__ENST00000589803.5_1_17:67102167-67114054:-|nuORF	REV__ENST00000589803.5_1_17:67102167-67114054:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.2960205078125	2	469.295102	936.575651	-0.019563	-9.1809E-06	-0.48546	-0.00022782	-0.50502	-0.00023701	469.29487709543525	104.25	2.1088	102.13	101.48	103.59	-2.1192					129	40	5	0	0	0	0.68714	1	9396	9396		45.952	3.4775	1	1899600	+		7594	20372	6132	6142	8677	8677					0.10482654548138726
EKLHLESLPR	10	Unmodified	_EKLHLESLPR_					0	0	0			REV__ERC1-CACNA1C|23|fusion	REV__ERC1-CACNA1C|23|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3499755859375	2	611.351137	1220.68772	-2.0282	-0.0012399	1.626	0.00099405	-0.40221	-0.00024589	611.3520273138611	126.24	1.2813	124.82	124.48	125.76	-1.4143					74	25	4	0	0	0	0.71173	1	12011	12011		29.17	2.4771	1	434950	+		7595	28114	6133	6143	8678	8678					0.08620463834449765
EKLILKVKK	9	Unmodified	_EKLILKVKK_					0	0	0		nc|ENSG00000198862|O94822-3|LTN1;ENSG00000198862|ENST00000361371|LTN1;LTN1|p.F413Lfs*7|1|0.45|ENSG00000198862|chr21:28969538-28969538|A/-|frameshift_variant;nc|ENSG00000198862|O94822-2|LTN1	nc|ENSG00000198862|O94822-3|LTN1	nc|ENSG00000198862|O94822-3|LTN1	MULTI-SECPEP	OvCa9_classI_Rep3	3	549.8302612304688	2	549.884084	1097.75362	-1.4224	-0.00078216	-1.169	-0.00064279	-2.5914	-0.001425	550.3863753621505	82.481	0.24451	80.185	80.039	80.283	-2.2963					5	4	2	0	0	0	0.027462	1	4655	4655		40.778	11.629	1	7238.5			7596	15262	6134	6144	8679	8679					0.20864904747327273
EKLKGYNI	8	Unmodified	_EKLKGYNI_					0	0	0		tr|A0A553SG00|A0A553SG00_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09845PE=4SV=1	tr|A0A553SG00|A0A553SG00_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09845PE=4SV=1	tr|A0A553SG00|A0A553SG00_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09845PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.299560546875	2	482.776742	963.538931	0.16393	7.9141E-05	-0.27306	-0.00013183	-0.10913	-5.2685E-05	482.7763767585527	70.702	0.4268	70.702	70.488	70.915	0					19	10	2	0	0	0	0.028476	1	6798	6798		76.774	12.567	1	513710			7597	33099	6135	6145	8680	8680					0.05570357931560466
EKLKKKFN	8	Unmodified	_EKLKKKFN_					0	0	0			REV__ENSG00000110841|ENST00000228425|PPFIBP1	REV__ENSG00000110841|ENST00000228425|PPFIBP1	MULTI-MSMS	OvCa9_classI_Rep2	2	517.8194580078125	2	517.821484	1033.62842	-2.2306	-0.0011551	-1.8311	-0.0009482	-4.0617	-0.0021033	517.8203985316244	146.61	1.347	146.38	145.92	147.27	-0.22696					66	26	3	0	0	0	0.745	1	14805	14805		29.15	6.1071	1	90796	+		7598	18005	6136	6146	8681	8681					0.1129461261095912
EKLLAAAI	8	Unmodified	_EKLLAAAI_					0	0	0			REV__tr|A0A553SJ77|A0A553SJ77_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_16260PE=4SV=1	REV__tr|A0A553SJ77|A0A553SJ77_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_16260PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	414.76141357421875	2	414.763104	827.511654	-0.47497	-0.000197	-2.6059	-0.0010808	-3.0808	-0.0012778	414.761930419043	140.08	2.1671	139.86	139.4	141.57	-0.22696					123	43	4	0	0	0	0.73938	1	14066	14066		31.955	5.1588	1	474850	+		7599	29974	6137	6147	8682	8682					0.09099874391165486
EKLLFTLISAS	11	Unmodified	_EKLLFTLISAS_					0	0	0			REV__ENST00000529902.2_1_14:50466771-50470439:-|nuORF	REV__ENST00000529902.2_1_14:50466771-50470439:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	611.3566284179688	2	611.358096	1220.70164	-3.7398	-0.0022864	0.47754	0.00029195	-3.2623	-0.0019944	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.71048	1	15230	15230		26.063	0.48933	1	331570	+		7600	27196	6138	6148	8683	8683					0.10011696542937898
EKLLFTLISAS	11	Unmodified	_EKLLFTLISAS_					0	0	0			REV__ENST00000529902.2_1_14:50466771-50470439:-|nuORF	REV__ENST00000529902.2_1_14:50466771-50470439:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3560791015625	2	611.358096	1220.70164	-3.1571	-0.0019301	-0.12375	-7.5658E-05	-3.2809	-0.0020058	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.70761	1	12755	12755		27.047	0.3544	1	666990	+		7601	27196	6138	6148	8684	8684					0.10011696542937898
EKLLHKFPYHL	11	Unmodified	_EKLLHKFPYHL_					0	0	0		ENST00000420283.2_1_6:116573500-116573923:-|nuORF	ENST00000420283.2_1_6:116573500-116573923:-|nuORF	ENST00000420283.2_1_6:116573500-116573923:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	475.6079406738281	3	475.606478	1423.79761	0.21695	0.00010318	3.2526	0.0015469	3.4695	0.0016501	475.6080820872315	80.588	3.0505	78.893	78.222	81.273	-1.6951					178	59	5	0	0	0	0.69015	1	6831	6831		33.039	0.28887	1	4080000			7602	11668	6139	6149	8685	8685					0.1026588917366098
EKLLHKFPYHL	11	Unmodified	_EKLLHKFPYHL_					0	0	0		ENST00000420283.2_1_6:116573500-116573923:-|nuORF	ENST00000420283.2_1_6:116573500-116573923:-|nuORF	ENST00000420283.2_1_6:116573500-116573923:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.6091613769531	3	475.606478	1423.79761	-0.31997	-0.00015218	3.7336	0.0017757	3.4136	0.0016235	475.6082822814047	81.327	2.6289	78.616	78.297	80.926	-2.7106					180	53	6	0	0	0	0.58642	3	6685	6673;6685;6711		45.908	5.6747	1	5314900			7603	11668	6139	6149	8686;8687;8688	8687					0.1026588917366098
EKLLKEKED	9	Unmodified	_EKLLKEKED_					0	0	0			REV__PALLD-NFE2L2|1|fusion	REV__PALLD-NFE2L2|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	566.2813720703125	2	566.316428	1130.6183	0.2477	0.00014028	0.029845	1.6901E-05	0.27754	0.00015718	566.3169791616689	66.417	1.6173	62.926	62.321	63.938	-3.4902					64	32	3	0	0	0	0.027462	1	4947	4947		42.396	0	1	118310	+		7604	29275	6140	6150	8689	8689					0.05821960095045142
EKLLLTKMA	9	Unmodified	_EKLLLTKMA_					0	0	0			REV__nc|ENSG00000112984|O95235-2|KIF20A	REV__nc|ENSG00000112984|O95235-2|KIF20A	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2702026367188	2	523.817553	1045.62055	-0.28866	-0.0001512	-3.9395	-0.0020636	-4.2282	-0.0022148	523.8159104944323	57.294	0.21581	57.294	57.138	57.353	0					6	4	2	0	0	0	0.027462	1	4792	4792		26.693	12.918	1	49583	+		7605	18131	6141	6151	8690	8690					0.09956717299155571
EKLLWRLEC	9	Unmodified	_EKLLWRLEC_					0	0	0			REV__ENST00000481587.5_1_3:179041044-179042762:+|nuORF	REV__ENST00000481587.5_1_3:179041044-179042762:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	595.3245239257812	2	595.323534	1188.63251	1.9427	0.0011565	-4.0049	-0.0023842	-2.0622	-0.0012277	595.3211199021375	112.64	0.858	112.64	112.34	113.2	0					38	18	3	0	0	0	0.50149	1	12812	12812		42.396	0.96952	1	412300	+		7606	26481	6142	6152	8691	8691					0.04574334042354167
EKLNQLKIIA	10	Unmodified	_EKLNQLKIIA_					0	0	0		ENSG00000166046|ENST00000299045|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	MULTI-MSMS	OvCa9_classI_Rep4_	4	585.3645629882812	2	585.366256	1168.71796	-6.2956	-0.0036852	2.7799	0.0016273	-3.5157	-0.002058	585.3677591181973	158.39	1.3975	156.8	156.14	157.53	-1.5858					64	43	2	0	0	0	0.83261	1	15646	15646		14.865	1.4108	1	25654			7607	6631	6143	6153	8692	8692					0.1403482249966146
EKLPLKQFS	9	Unmodified	_EKLPLKQFS_					0	0	0			REV__tr|A0A553SN04|A0A553SN04_NIACISignaltransductionhistidine-proteinkinaseArlSOS=NialliacirculansOX=1397GN=CEQ21_23415PE=4SV=1	REV__tr|A0A553SN04|A0A553SN04_NIACISignaltransductionhistidine-proteinkinaseArlSOS=NialliacirculansOX=1397GN=CEQ21_23415PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	545.316650390625	2	545.318774	1088.623	-2.8527	-0.0015556	-0.96726	-0.00052747	-3.8199	-0.0020831	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.68424	1	12018	12018		21.96	0	1	337600	+		7608	30385	6144	6154	8693	8693					0.08222889028479585
EKLPVRPHPPL	11	Unmodified	_EKLPVRPHPPL_					0	0	0			REV__nc|ENSG00000278318|Q9UJW7-2|ZNF229	REV__nc|ENSG00000278318|Q9UJW7-2|ZNF229	MULTI-MSMS	OvCa9_classI_Rep2	2	641.882568359375	2	641.885147	1281.75574	-4.0037	-0.0025699	-0.45506	-0.00029209	-4.4587	-0.002862	642.3862707583961	149.94	3.9275	149.71	147.52	151.45	-0.22696					225	78	5	0	0	0	0.72485	1	15172	15172		17.468	4.6563	1	222110	+		7609	23641	6145	6155	8694	8694					0.12613333485114708
EKLPVRPHPPL	11	Unmodified	_EKLPVRPHPPL_					0	0	0			REV__nc|ENSG00000278318|Q9UJW7-2|ZNF229	REV__nc|ENSG00000278318|Q9UJW7-2|ZNF229	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8817138671875	2	641.885147	1281.75574	-4.6434	-0.0029805	0.6524	0.00041876	-3.991	-0.0025618	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.68399	1	15640	15640		35.152	2.4015	1	543390	+		7610	23641	6145	6155	8695	8695					0.12613333485114708
EKLPVRPHPPL	11	Unmodified	_EKLPVRPHPPL_					0	0	0			REV__nc|ENSG00000278318|Q9UJW7-2|ZNF229	REV__nc|ENSG00000278318|Q9UJW7-2|ZNF229	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8826904296875	2	641.885147	1281.75574	-4.605	-0.0029559	0.1276	8.1903E-05	-4.4774	-0.002874	641.8852528126143	150.24	3.761	149.29	147.05	150.81	-0.95119					231	74	4	0	0	0	0.68021	1	12686	12686		36.447	11.928	1	246170	+		7611	23641	6145	6155	8696	8696					0.12613333485114708
EKLPVRPHPPL	11	Unmodified	_EKLPVRPHPPL_					0	0	0			REV__nc|ENSG00000278318|Q9UJW7-2|ZNF229	REV__nc|ENSG00000278318|Q9UJW7-2|ZNF229	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8818359375	2	641.885147	1281.75574	-2.5182	-0.0016164	-1.9587	-0.0012572	-4.4768	-0.0028736	641.8839546837315	150.47	2.9704	149.03	147.78	150.75	-1.4344					235	64	4	0	0	0	0.68757	1	14875	14875		33.922	3.6039	1	344900	+		7612	23641	6145	6155	8697	8697					0.12613333485114708
EKLQDRIKQKL	11	Unmodified	_EKLQDRIKQKL_					0	0	0			REV__ENST00000573615.5_1_16:30391180-30392483:-|nuORF	REV__ENST00000573615.5_1_16:30391180-30392483:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	466.95245361328125	3	466.952426	1397.83545	-1.5135	-0.00070674	0.96613	0.00045114	-0.54739	-0.00025561	466.952858762852	61.658	1.9496	58.899	58.515	60.465	-2.7593					109	37	4	0	0	0	0.67685	1	4591	4591		37.6	5.5658	1	461980	+		7613	22158	6146	6156	8698	8698					0.15244355368440665
EKLQDRIKQKL	11	Unmodified	_EKLQDRIKQKL_					0	0	0			REV__ENST00000573615.5_1_16:30391180-30392483:-|nuORF	REV__ENST00000573615.5_1_16:30391180-30392483:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	466.9525146484375	3	466.952426	1397.83545	1.5916	0.00074322	-2.0144	-0.00094062	-0.42273	-0.00019739	466.9514863874782	62.714	2.1935	59.681	59.362	61.555	-3.0339					129	43	5	0	0	0	0.72069	1	2386	2386		22.562	1.5294	1	504980	+		7614	22158	6146	6156	8699	8699					0.15244355368440665
EKLQEDSWN	9	Unmodified	_EKLQEDSWN_					0	0	0			REV__tr|A0A553STX7|A0A553STX7_NIACIDUF229domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05935PE=4SV=1	REV__tr|A0A553STX7|A0A553STX7_NIACIDUF229domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05935PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.7904052734375	2	574.76456	1147.51457	-0.66778	-0.00038382	1.1547	0.00066368	0.48692	0.00027986	574.7649942150766	54.93	0.38917	54.93	54.761	55.15	0					13	8	2	0	0	0	0.027452	1	4484	4484		49.536	0	1	121560	+		7615	31021	6147	6157	8700	8700					-0.053289470125946536
EKLQESAEL	9	Unmodified	_EKLQESAEL_					0	0	0			REV__tr|A0A7D6VQL6|A0A7D6VQL6_9CLOTDiaminopropionateammonia-lyaseOS=ClostridiumintestinaleOX=36845GN=dpaLPE=4SV=1	REV__tr|A0A7D6VQL6|A0A7D6VQL6_9CLOTDiaminopropionateammonia-lyaseOS=ClostridiumintestinaleOX=36845GN=dpaLPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.294189453125	2	523.771854	1045.52915	-0.67019	-0.00035103	2.2975	0.0012033	1.6273	0.00085232	523.7733604332471	65.244	0.53059	61.758	61.504	62.034	-3.4854					17	10	2	0	0	0	0.027072	1	4713	4713		101.6	10.824	1	46454	+		7616	31336	6148	6158	8701	8701					0.008211251355078275
EKLQESAEL	9	Unmodified	_EKLQESAEL_					0	0	0			REV__tr|A0A7D6VQL6|A0A7D6VQL6_9CLOTDiaminopropionateammonia-lyaseOS=ClostridiumintestinaleOX=36845GN=dpaLPE=4SV=1	REV__tr|A0A7D6VQL6|A0A7D6VQL6_9CLOTDiaminopropionateammonia-lyaseOS=ClostridiumintestinaleOX=36845GN=dpaLPE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	523.771854	1045.52915	-0.72025	-0.00037725	0.10017	5.2466E-05	-0.62008	-0.00032478	524.2731225997102	61.847	0.37759	61.847	61.704	62.081	0	0.044261	-0.0012598	NaN	101.6	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160400	+		7617	31336	6148	6158							0.008211251355078275
EKLRGALK	8	Unmodified	_EKLRGALK_					0	0	0			REV__ENSG00000213694|ENST00000358157|S1PR3	REV__ENSG00000213694|ENST00000358157|S1PR3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.75946044921875	2	457.792727	913.5709	-0.067362	-3.0838E-05	0.014253	6.5251E-06	-0.053109	-2.4313E-05	457.7926044595714	58.931	0.60325	55.539	55.35	55.953	-3.392					16	11	2	0	0	0	0.028476	1	3944	3944		39.253	0	1	39619	+		7618	23267	6149	6159	8702	8702					0.11065770405366493
EKLRKFRF	8	Unmodified	_EKLRKFRF_					0	0	0		ENSG00000130755|ENST00000597595|GMFG;ENSG00000197045|ENST00000358056|GMFB;ENST00000553952.1_1_14:54950332-54955663:-|nuORF;ENST00000554682.1_1_14:54948855-54955663:-|nuORF;ENST00000598218.1_1_19:39823656-39826616:-|nuORF;ENST00000554163.5_1_14:54948056-54950476:-|nuORF	ENSG00000130755|ENST00000597595|GMFG	ENSG00000130755|ENST00000597595|GMFG	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.347412109375	2	562.340375	1122.6662	1.2434	0.00069921	4.1981	0.0023608	5.4415	0.00306	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.72896	1	14307	14307		37.159	9.2769	1	683710			7619	4010	6150	6160	8703	8703					0.10977123596398997
EKLRLYKE	8	Unmodified	_EKLRLYKE_					0	0	0		ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11;ANKRD11|p.R1597Lfs*44|1|0.12|ENSG00000167522|chr16:89281752-89281753|-/A|frameshift_variant;ANKRD11|p.H1613Tfs*39|1|0.32|ENSG00000167522|chr16:89281705-89281706|-/GGCACGGGCGTGGAGTGCTGCGAGTCGGCGCAGT|frameshift_variant	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.25146484375	2	539.816399	1077.61824	-0.41126	-0.00022201	-0.11753	-6.3445E-05	-0.52879	-0.00028545	539.8161468265838	55.657	0.942	55.657	55.193	56.135	0					53	22	4	0	0	0	0.028476	1	4500	4500		52.937	0	1	1834900			7620	6795	6151	6161	8704	8704					0.08254004885679933
EKLSDYQIAF	10	Unmodified	_EKLSDYQIAF_					0	0	0		ENST00000589091.1_1_19:10251445-10251985:-|nuORF	ENST00000589091.1_1_19:10251445-10251985:-|nuORF	ENST00000589091.1_1_19:10251445-10251985:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	607.3095703125	2	607.308603	1212.60265	1.2734	0.00077333	2.2254	0.0013515	3.4988	0.0021249	607.3098713092123	88.651	1.9735	87.283	86.592	88.565	-1.3676					100	39	3	0	0	0	0.71173	1	7800	7800		29.17	0.020503	1	588040			7621	14083	6152	6162	8705	8705					0.004856735779867449
EKLSLAAI	8	Unmodified	_EKLSLAAI_					0	0	0			REV__tr|A0A553STB2|A0A553STB2_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04515PE=3SV=1	REV__tr|A0A553STB2|A0A553STB2_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04515PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	422.76171875	2	422.760561	843.506569	-1.2278	-0.00051905	0.88444	0.0003739	-0.34332	-0.00014514	422.76083394075005	88.804	1.339	86.201	85.832	87.171	-2.6027					55	26	3	0	0	0	0.58851	1	7599	7599		66.429	5.4573	1	275490	+		7622	30942	6153	6163	8706	8706					0.07855570528568023
EKLSLAAI	8	Unmodified	_EKLSLAAI_					0	0	0			REV__tr|A0A553STB2|A0A553STB2_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04515PE=3SV=1	REV__tr|A0A553STB2|A0A553STB2_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04515PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	422.760561	843.506569	1.6236	0.00068637	-1.5545	-0.00065718	0.069065	2.9198E-05	422.7597619253659	87.615	1.327	86.183	85.841	87.168	-1.4311	0.047356	-0.00070617	NaN	66.429	59	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165850	+		7623	30942	6153	6163							0.07855570528568023
EKLSLAAI	8	Unmodified	_EKLSLAAI_					0	0	0			REV__tr|A0A553STB2|A0A553STB2_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04515PE=3SV=1	REV__tr|A0A553STB2|A0A553STB2_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04515PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	422.760561	843.506569	0.15068	6.3703E-05	-0.48934	-0.00020688	-0.33866	-0.00014317	422.7604411828449	88.155	1.6385	86.024	85.648	87.287	-2.1309	-0.11229	0.00019443	NaN	66.429	75	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	296790	+		7624	30942	6153	6163							0.07855570528568023
EKLSLAAI	8	Unmodified	_EKLSLAAI_					0	0	0			REV__tr|A0A553STB2|A0A553STB2_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04515PE=3SV=1	REV__tr|A0A553STB2|A0A553STB2_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04515PE=3SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	422.760561	843.506569	-1.2278	-0.00051905	0.88444	0.0003739	-0.34332	-0.00014514	422.76083394075005	88.804	1.339	86.201	85.832	87.171	-2.6027	0.064935	0.001356	NaN	66.429	55	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	275490	+		7625	30942	6153	6163							0.07855570528568023
EKLSRDIF	8	Unmodified	_EKLSRDIF_					0	0	0			REV__ENSG00000197140|ENST00000379907|ADAM32	REV__ENSG00000197140|ENST00000379907|ADAM32	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.2754821777344	2	504.279649	1006.54475	-1.9384	-0.0009775	-0.2624	-0.00013232	-2.2008	-0.0011098	504.2792975640648	84.762	0.89758	83.216	82.848	83.745	-1.5462					26	17	2	0	0	0	0.028476	1	7313	7313		65.803	0	1	16005	+		7626	22896	6154	6164	8707	8707					0.041734564432204024
EKLSRSLPK	9	Unmodified	_EKLSRSLPK_					0	0	0			REV__nc|ENSG00000214694|A8MVX0|ARHGEF33	REV__nc|ENSG00000214694|A8MVX0|ARHGEF33	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8096923828125	2	529.321848	1056.62914	1.2265	0.00064922	0.081724	4.3258E-05	1.3082	0.00069248	529.32207108501	119.53	0.62932	119.53	119.29	119.92	0					28	15	3	0	0	0	0.027462	1	13746	13746		39.253	12.457	1	379920	+		7627	23294	6155	6165	8708	8708					0.10309407259978798
EKLSTHCNK	9	Unmodified	_EKLSTHCNK_					0	0	0		ENST00000369232.2_1_6:99949817-99958096:-|nuORF;nc|ENSG00000123552|Q70EL2-2|USP45;ENSG00000123552|ENST00000500704|USP45	ENST00000369232.2_1_6:99949817-99958096:-|nuORF	ENST00000369232.2_1_6:99949817-99958096:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.2471923828125	2	530.266216	1058.51788	-0.73253	-0.00038843	-1.2175	-0.00064559	-1.95	-0.001034	530.7666140704182	42.243	0.26195	42.243	42.068	42.329	0					8	5	2	0	0	0	0.027459	1	2684	2684		62.107	37.588	1	25891			7628	3602	6156	6166	8709	8709					-0.009039754396326316
EKLSTHCNK	9	Unmodified	_EKLSTHCNK_					0	0	0		ENST00000369232.2_1_6:99949817-99958096:-|nuORF;nc|ENSG00000123552|Q70EL2-2|USP45;ENSG00000123552|ENST00000500704|USP45	ENST00000369232.2_1_6:99949817-99958096:-|nuORF	ENST00000369232.2_1_6:99949817-99958096:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.266216	1058.51788	-0.68599	-0.00036376	-5.9383	-0.0031489	-6.6243	-0.0035126	530.2628563216967	45.142	0.2987	42.432	42.199	42.497	-2.7097	0.094567	-0.0019586	NaN	62.107	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7117.6			7629	3602	6156	6166							-0.009039754396326316
EKLTPVLLA	9	Unmodified	_EKLTPVLLA_					0	0	0		ENST00000552390.5_1_12:57926966-57928919:-|nuORF;DCTN2|p.L382Ffs*16|1|0.31|ENSG00000175203|chr12:57530751-57530752|-/AA|frameshift_variant;ENSG00000175203|ENST00000548249|DCTN2;nc|ENSG00000175203|Q13561-3|DCTN2;nc|ENSG00000175203|Q13561-2|DCTN2	ENST00000552390.5_1_12:57926966-57928919:-|nuORF	ENST00000552390.5_1_12:57926966-57928919:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.305419921875	2	492.310418	982.606283	1.7571	0.00086506	0.15412	7.5876E-05	1.9113	0.00094094	492.3101577248266	108.66	0.51942	108.66	108.41	108.93	0					15	11	2	0	0	0	0.027462	1	12308	12308		21.96	0	1	74543			7630	713	6157	6167	8710	8710					0.11428388142519452
EKLWKYPD	8	Unmodified	_EKLWKYPD_					0	0	0		ENST00000264220.6_1_4:57267056-57268281:-|nuORF	ENST00000264220.6_1_4:57267056-57268281:-|nuORF	ENST00000264220.6_1_4:57267056-57268281:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.25146484375	2	539.782025	1077.5495	-0.45218	-0.00024408	-4.2055	-0.00227	-4.6577	-0.0025141	539.7797002830331	55.304	0.32989	55.304	55.15	55.48	0					11	7	2	0	0	0	0.028476	1	4500	4500		40.778	0	1	265590			7631	9928	6158	6168	8711	8711					0.013823405859739069
EKLWTVIP	8	Unmodified	_EKLWTVIP_					0	0	0			REV__IGSF9B|p.L1050Afs*16|1|0.11|ENSG00000080854|chr11:133920577-133920578|-/C|frameshift_variant	REV__IGSF9B|p.L1050Afs*16|1|0.11|ENSG00000080854|chr11:133920577-133920578|-/C|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2732849121094	2	493.289485	984.564418	-0.1891	-9.3281E-05	-4.4031	-0.002172	-4.5922	-0.0022653	493.28719268825637	69.051	0.6174	69.051	68.815	69.433	0					32	14	3	0	0	0	0.028476	1	6574	6574		82.305	30.97	1	1469700	+		7632	17061	6159	6169	8712	8712					0.07151832453973839
EKLYHALGKN	10	Unmodified	_EKLYHALGKN_					0	0	0			REV__ENSG00000133142|ENST00000472484|TCEAL4	REV__ENSG00000133142|ENST00000472484|TCEAL4	MULTI-MSMS	OvCa9_classI_Rep2	2	586.8240966796875	2	586.824755	1171.63496	-3.1356	-0.00184	1.1921	0.00069958	-1.9434	-0.0011405	586.8253279417393	148.8	1.3036	148.57	148.17	149.47	-0.22696					68	25	4	0	0	0	0.67931	1	15053	15053		32.812	1.2826	1	137330	+		7633	19133	6160	6170	8713	8713					0.056005057716674855
EKLYNYLIQK	10	Unmodified	_EKLYNYLIQK_					0	0	0			REV__ENSG00000128849|ENST00000281282|CGNL1	REV__ENSG00000128849|ENST00000281282|CGNL1	MULTI-MSMS	OvCa9_classI_Rep2	2	437.9133605957031	3	437.915089	1310.72344	0.19985	8.7516E-05	-3.5409	-0.0015506	-3.341	-0.0014631	437.91351765663677	67.362	1.7287	64.701	64.248	65.977	-2.661					108	34	5	0	0	0	0.66944	1	5261	5261		33.922	4.3709	1	600720	+		7634	18873	6161	6171	8714	8714					0.08050501291472756
EKMAEHELDK	10	Unmodified	_EKMAEHELDK_					0	0	0			REV__tr|A0A7D6ZGF2|A0A7D6ZGF2_9CLOTYokE-likePHdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22015PE=4SV=1	REV__tr|A0A7D6ZGF2|A0A7D6ZGF2_9CLOTYokE-likePHdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22015PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	615.3126831054688	2	615.29517	1228.57579	-0.63495	-0.00039068	-3.3717	-0.0020746	-4.0066	-0.0024653	615.2923270058865	127.63	0.2524	126.2	126.09	126.34	-1.4357					7	4	2	0	0	0	0.02676	1	12172	12172		49.536	6.6718	1	7482.3	+		7635	31997	6162	6172	8715	8715					-0.02935758304852243
EKMLPRVSQ	9	Unmodified	_EKMLPRVSQ_					0	0	0			REV__CPT1A|p.Y427Tfs*104|1|0.15|ENSG00000110090|chr11:68781845-68781845|T/-|frameshift_variant	REV__CPT1A|p.Y427Tfs*104|1|0.15|ENSG00000110090|chr11:68781845-68781845|T/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2978515625	2	544.300059	1086.58556	-0.43407	-0.00023627	1.7908	0.00097473	1.3567	0.00073847	544.3008027595023	40.615	0.36301	40.615	40.432	40.795	0					9	7	2	0	0	0	0.027462	1	2485	2485		26.693	0	1	28021	+		7636	16234	6163	6173	8716	8716					0.04573474491212437
EKMPESIKFI	10	Oxidation (M)	_EKM(Oxidation (M))PESIKFI_		EKM(1)PESIKFI		EKM(42)PESIKFI	0	0	1		ENSG00000115594|ENST00000410023|IL1R1	ENSG00000115594|ENST00000410023|IL1R1	ENSG00000115594|ENST00000410023|IL1R1	MULTI-MSMS	OvCa99_classI_Rep5	1	413.2215881347656	3	413.221413	1236.64241	-0.11604	-4.7951E-05	0.71905	0.00029713	0.60301	0.00024918	413.2215560621862	27.483	0.39997	27.483	27.341	27.741	0					17	7	4	0	0	0	0.59751	1	816	816		42.338	9.5875	1	182940			7637	3110	6164	6174	8717	8717		100			0.03355477257059647
EKMRKCLLK	9	Unmodified	_EKMRKCLLK_					0	0	0		ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	OvCa99_classI_Rep5	1	575.3382568359375	2	574.835754	1147.65695	2.3077	0.0013266	-1.9877	-0.0011426	0.32007	0.00018399	574.8337239280571	100.59	0.87207	100.59	100.36	101.23	0					58	20	4	0	0	0	0.38969	1	11167	11167		52.937	1.6012	1	2065800			7638	3901	6165	6175	8718	8718					0.08903270924201934
EKMRPLIVGR	10	Unmodified	_EKMRPLIVGR_					0	0	0		ENSG00000164296|ENST00000296736|TIGD6	ENSG00000164296|ENST00000296736|TIGD6	ENSG00000164296|ENST00000296736|TIGD6	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.1955261230469	3	400.241142	1197.7016	0.35208	0.00014092	2.9552	0.0011828	3.3072	0.0013237	400.24227169770194	34.498	0.5133	34.498	34.304	34.818	0					24	10	3	0	0	0	0.027118	1	1697	1697		18.531	10.497	1	309870			7639	6439	6166	6176	8719	8719					0.11065418061912169
EKMSIYGSHDS	11	Unmodified	_EKMSIYGSHDS_					0	0	0			REV__ENST00000461006.5_1_1:32096163-32098865:-|nuORF	REV__ENST00000461006.5_1_1:32096163-32098865:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	627.2740478515625	2	627.276977	1252.5394	-2.3059	-0.0014464	-2.1683	-0.0013601	-4.4742	-0.0028066	627.2755178836939	34.296	2.0334	31.586	31.267	33.3	-2.7097					77	40	3	0	0	0	0.72526	1	1303	1303		12.207	0.57075	1	68104	+		7640	20741	6167	6177	8720	8720					-0.0767663520152837
EKMWRQEERLR	11	Unmodified	_EKMWRQEERLR_					0	0	0		nc|ENSG00000174450|Q8N9W4-2|GOLGA6L2;nc|ENSG00000174450|Q8N9W4-1|GOLGA6L2;ENSG00000174450|ENST00000567107|GOLGA6L2	nc|ENSG00000174450|Q8N9W4-2|GOLGA6L2	nc|ENSG00000174450|Q8N9W4-2|GOLGA6L2	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.3117065429688	3	520.940303	1559.79908	1.4686	0.00076506	-2.8525	-0.001486	-1.3838	-0.0007209	520.938708896113	85.402	0.58018	85.402	85.004	85.585	0					19	13	2	0	0	0	0.026505	1	8939	8939		9.2118	2.8909	1	569300			7641	7467	6168	6178	8721	8721					0.041571552000959855
EKNEPDASIV	10	Unmodified	_EKNEPDASIV_					0	0	0			REV__ENSG00000145623|ENST00000274276|OSMR	REV__ENSG00000145623|ENST00000274276|OSMR	MULTI-SECPEP	OvCa9_classI_Rep3	3	551.8486938476562	2	551.274761	1100.53497	-1.0012	-0.00055195	-0.82237	-0.00045335	-1.8236	-0.0010053	551.2741426076805	102.45	1.0427	100.93	100.32	101.36	-1.5211					48	19	5	0	0	0	0.026606	1	7004	7004		71.877	0	1	94834	+		7642	19971	6169	6179	8722	8722					-0.011277763528141804
EKNEPDASIV	10	Unmodified	_EKNEPDASIV_					0	0	0			REV__ENSG00000145623|ENST00000274276|OSMR	REV__ENSG00000145623|ENST00000274276|OSMR	MULTI-MATCH	OvCa9_classI_Rep2	2		2	551.274761	1100.53497	-0.58088	-0.00032023	-2.0425	-0.001126	-2.6234	-0.0014462	551.2733728426455	101.57	0.99119	100.8	100.42	101.41	-0.76401	-0.044349	-0.00092316	NaN	71.877	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52652	+		7643	19971	6169	6179							-0.011277763528141804
EKNEPYKIE	9	Unmodified	_EKNEPYKIE_					0	0	0		tr|A0A7D6VZK5|A0A7D6VZK5_9CLOTThreonine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=thrSPE=3SV=1	tr|A0A7D6VZK5|A0A7D6VZK5_9CLOTThreonine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=thrSPE=3SV=1	tr|A0A7D6VZK5|A0A7D6VZK5_9CLOTThreonine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=thrSPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.8146362304688	2	575.292953	1148.57135	-0.6704	-0.00038568	-4.3126	-0.002481	-4.983	-0.0028667	575.2905734092224	69.624	0.19637	69.624	69.475	69.672	0					6	4	2	0	0	0	0.027255	1	6626	6626		93.143	18.1	1	706420			7644	35361	6170	6180	8723	8723					0.0030110054387932905
EKNKLGAKII	10	Unmodified	_EKNKLGAKII_					0	0	0		nc|ENSG00000152404|Q2TBE0-3|CWF19L2;nc|ENSG00000152404|Q2TBE0-2|CWF19L2;ENSG00000152404|ENST00000282251|CWF19L2	nc|ENSG00000152404|Q2TBE0-3|CWF19L2	nc|ENSG00000152404|Q2TBE0-3|CWF19L2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.7412719726562	2	557.353148	1112.69174	-0.3202	-0.00017846	-0.26745	-0.00014906	-0.58765	-0.00032753	557.352889122033	54.596	0.71765	51.349	51.132	51.85	-3.2474					21	13	2	0	0	0	0.026577	1	3406	3406		67.494	3.2864	1	30225			7645	5619	6171	6181	8724	8724					0.13990553328176247
EKNNLIKP	8	Unmodified	_EKNNLIKP_					0	0	0		tr|A0A7D6VPG4|A0A7D6VPG4_9CLOTPadRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_22935PE=4SV=1	tr|A0A7D6VPG4|A0A7D6VPG4_9CLOTPadRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_22935PE=4SV=1	tr|A0A7D6VPG4|A0A7D6VPG4_9CLOTPadRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_22935PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.27813720703125	2	478.282192	954.549831	-0.36986	-0.0001769	0.45353	0.00021692	0.083672	4.0019E-05	478.28227233772583	38.554	0.35728	38.554	38.348	38.705	0					12	7	2	0	0	0	0.028476	1	2210	2210		65.803	0	1	154010			7646	34768	6172	6182	8725	8725					0.0707376030584328
EKNPTFSLKE	10	Unmodified	_EKNPTFSLKE_					0	0	0		ENST00000490549.1_1_10:25883203-25888200:+|nuORF;ENSG00000151025|ENST00000376351|GPR158	ENST00000490549.1_1_10:25883203-25888200:+|nuORF	ENST00000490549.1_1_10:25883203-25888200:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	596.8161010742188	2	596.814053	1191.61355	3.1335	0.0018701	0.67913	0.00040531	3.8127	0.0022754	596.8143723057162	57.305	2.9299	54.154	53.228	56.158	-3.1504					108	83	2	0	0	0	0.79213	1	1693	1693		19.997	0	1	40554			7647	5529	6173	6183	8726	8726					0.025410759522628723
EKNRLSAFNYK	11	Unmodified	_EKNRLSAFNYK_					0	0	0		ENST00000502976.5_1_3:128889097-128889217:-|nuORF	ENST00000502976.5_1_3:128889097-128889217:-|nuORF	ENST00000502976.5_1_3:128889097-128889217:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	457.7569274902344	3	457.245609	1368.715	-1.3432	-0.00061415	-0.77461	-0.00035418	-2.1178	-0.00096833	457.2453867916432	50.507	0.93296	47.365	46.82	47.753	-3.1416					35	17	3	0	0	0	0.025819	1	2853	2853		15.337	0	1	59684			7648	12859	6174	6184	8727	8727					0.04538947374840063
EKNTFKRKMIH	11	Unmodified	_EKNTFKRKMIH_					0	0	0			REV__ENSG00000149313|ENST00000278618|AASDHPPT	REV__ENSG00000149313|ENST00000278618|AASDHPPT	MULTI-MSMS	OvCa9_classI_Rep3	3	477.93536376953125	3	477.934489	1430.78164	1.0304	0.00049248	0.28312	0.00013531	1.3136	0.00062779	477.9346027351994	70.553	2.1532	67.834	67.549	69.702	-2.7196					131	42	5	0	0	0	0.71831	1	3241	3241		23.378	0	1	1423100	+		7649	20158	6175	6185	8728	8728					0.08347859665104806
EKPAEWPPI	9	Unmodified	_EKPAEWPPI_					0	0	0			REV__ENSG00000131187|ENST00000253496|F12	REV__ENSG00000131187|ENST00000253496|F12	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.2938232421875	2	533.782025	1065.5495	2.7342	0.0014595	-4.3072	-0.0022991	-1.573	-0.00083963	533.7796668267358	86.573	0.36986	86.573	86.35	86.72	0					14	8	3	0	0	0	0.027453	1	9155	9155		45.972	20.522	1	405530	+		7650	19003	6176	6186	8729	8729					0.019343405859899576
EKPEPIHLS	9	Unmodified	_EKPEPIHLS_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.803466796875	2	525.284931	1048.55531	-1.0513	-0.00055225	-3.9159	-0.002057	-4.9672	-0.0026092	525.2805278942312	79.581	1.3054	76.83	76.657	77.962	-2.7514					38	26	2	0	0	0	0.027462	1	6601	6601		39.253	16.21	1	86047			7651	1329	6177	6187	8730	8730					0.03297439097673305
EKPFLWLAR	9	Unmodified	_EKPFLWLAR_					0	0	0		ENSG00000132341|ENST00000543796|RAN;ENST00000455094.1_1_6:30454046-30454364:+|nuORF	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.8102416992188	2	580.334759	1158.65496	1.9915	0.0011558	-1.4529	-0.00084315	0.53868	0.00031262	580.3337574881152	108.16	0.34155	108.16	108.03	108.37	0					11	7	2	0	0	0	0.027455	1	12211	12211		42.396	0	1	235200			7652	4131	6178	6188	8731	8731					0.08198301502284266
EKPIFHDP	8	Unmodified	_EKPIFHDP_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MULTI-SECPEP	OvCa9_classI_Rep3	3	492.2931823730469	2	491.753267	981.491981	-1.0966	-0.00053927	1.189	0.00058468	0.092345	4.5411E-05	491.7537587831233	81.855	2.4922	79.558	79.083	81.575	-2.2963					92	50	2	0	0	0	0.028476	1	4761	4761		44.117	22.157	1	228220			7653	2201	6179	6189	8732	8732					0.0004949838041738985
EKPLFPLVPLH	11	Unmodified	_EKPLFPLVPLH_					0	0	0		nc|ENSG00000137210|Q9NUH8-2|TMEM14B;nc|ENSG00000214881|A8MWL7|TMEM14DP;ENSG00000137210|ENST00000379542|TMEM14B	nc|ENSG00000137210|Q9NUH8-2|TMEM14B	nc|ENSG00000137210|Q9NUH8-2|TMEM14B	MULTI-SECPEP	OvCa9_classI_Rep2	2	645.3246459960938	2	645.384448	1288.75434	-1.753	-0.0011313	-1.8952	-0.0012231	-3.6482	-0.0023545	645.382920132414	99.728	2.3326	98.898	98.169	100.5	-0.83052					82	46	3	0	0	0	0.026239	1	9018	9018		22.58	2.5829	1	76261			7654	4568	6180	6190	8733	8733					0.12151699396349613
EKPLFPLVPLH	11	Unmodified	_EKPLFPLVPLH_					0	0	0		nc|ENSG00000137210|Q9NUH8-2|TMEM14B;nc|ENSG00000214881|A8MWL7|TMEM14DP;ENSG00000137210|ENST00000379542|TMEM14B	nc|ENSG00000137210|Q9NUH8-2|TMEM14B	nc|ENSG00000137210|Q9NUH8-2|TMEM14B	MULTI-MATCH	OvCa9_classI_Rep3	3		2	645.384448	1288.75434	-0.90089	-0.00058142	-4.1553	-0.0026818	-5.0562	-0.0032632	645.3816674010619	100.36	1.7647	98.754	98.47	100.23	-1.6053	-0.072037	-0.0024539	NaN	22.58	48	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206460			7655	4568	6180	6190							0.12151699396349613
EKPPKATKKP	10	Unmodified	_EKPPKATKKP_					0	0	0		ENSG00000106624|ENST00000223357|AEBP1	ENSG00000106624|ENST00000223357|AEBP1	ENSG00000106624|ENST00000223357|AEBP1	MULTI-MSMS	OvCa9_classI_Rep2	2	562.3419189453125	2	562.345323	1122.67609	-4.5941	-0.0025835	1.3428	0.00075512	-3.2513	-0.0018284	562.3457579287042	161.6	0.62779	161.38	161.04	161.67	-0.22697					24	12	3	0	0	0	0.78463	1	16447	16447		20.947	0.95016	1	29283			7656	2565	6181	6191	8734	8734					0.11966266811123205
EKPRVELN	8	Unmodified	_EKPRVELN_					0	0	0			REV__nc|ENSG00000144852|O75469-3|NR1I2	REV__nc|ENSG00000144852|O75469-3|NR1I2	MULTI-MSMS	OvCa99_classI_Rep5	1	492.7785949707031	2	492.777274	983.539994	-0.63368	-0.00031226	0.41238	0.00020321	-0.22131	-0.00010906	492.7773254567589	55.255	0.78085	55.255	55.023	55.804	0					37	18	3	0	0	0	0.32444	1	4511	4511		102.77	20.468	1	3319800	+		7657	28909	6182	6192	8735	8735					0.04756572300482276
EKPYKCELCS	10	Unmodified	_EKPYKCELCS_					0	0	0		ENSG00000095574|ENST00000368886|IKZF5	ENSG00000095574|ENST00000368886|IKZF5	ENSG00000095574|ENST00000368886|IKZF5	MULTI-MSMS	OvCa9_classI_Rep2	2	600.2731323242188	2	600.275392	1198.53623	-5.4284	-0.0032585	-0.13736	-8.2452E-05	-5.5658	-0.003341	600.275203760979	160.29	1.5488	160.06	159.78	161.33	-0.22697					74	31	3	0	0	0	0.79213	1	16332	16332		19.997	0.89325	1	65724			7658	1933	6183	6193	8736	8736					-0.0550960157991085
EKPYKCEVC	9	Unmodified	_EKPYKCEVC_					0	0	0		ENST00000600692.5_1_19:21350445-21366834:+|nuORF;ENSG00000196705|ENST00000311048|ZNF431;nc|ENSG00000197008|P52744|ZNF138;nc|ENSG00000197008|P52744-2|ZNF138;ENSG00000197008|ENST00000307355|ZNF138;nc|ENSG00000267508|Q96NJ3-2|ZNF285;ENSG00000169957|ENST00000380412|ZNF768;ENSG00000267508|ENST00000614994|ZNF285;ENSG00000263002|ENST00000426739|ZNF234;nc|ENSG00000159917|Q14590-2|ZNF235;ENSG00000159917|ENST00000291182|ZNF235;nc|ENSG00000198521|P17038-2|ZNF43;ENSG00000198521|ENST00000354959|ZNF43;ENSG00000062370|ENST00000354340|ZNF112;nc|ENSG00000062370|Q9UJU3|ZNF112;ENSG00000159915|ENST00000683810|ZNF233	ENST00000600692.5_1_19:21350445-21366834:+|nuORF;ENSG00000159915|ENST00000683810|ZNF233	ENST00000600692.5_1_19:21350445-21366834:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.71484375	2	549.751553	1097.48855	-0.40476	-0.00022252	2.2901	0.001259	1.8853	0.0010365	550.2548763358824	35.739	0.27944	35.739	35.566	35.846	0					8	5	2	0	0	0	0.027461	1	1838	1838		58.782	0	1	19708			7659	8644;6033	6184	6194	8737	8737					-0.056292557801043586
EKQEPENAGE	10	Unmodified	_EKQEPENAGE_					0	0	0		ENSG00000237651|ENST00000432605|C2orf74	ENSG00000237651|ENST00000432605|C2orf74	ENSG00000237651|ENST00000432605|C2orf74	MULTI-SECPEP	OvCa9_classI_Rep4_	4	566.2813720703125	2	565.75165	1129.48875	1.9384	0.0010967	1.0946	0.00061929	3.033	0.001716	565.7522667483978	67.319	0.79008	63.829	63.64	64.43	-3.4902					29	15	3	0	0	0	0.026606	1	4947	4947		62.107	19.243	1	63501			7660	9319	6185	6195	8738	8738					-0.07081841254876053
EKQEPNQD	8	Unmodified	_EKQEPNQD_					0	0	0			REV__ZNF473|p.R712Pfs*8|1|0.23|ENSG00000142528|chr19:50046575-50046576|-/C|frameshift_variant	REV__ZNF473|p.R712Pfs*8|1|0.23|ENSG00000142528|chr19:50046575-50046576|-/C|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.32354736328125	2	494.222528	986.430503	-0.38082	-0.00018821	0.16981	8.3922E-05	-0.21101	-0.00010429	494.2224985748198	35.73	0.83094	35.73	35.52	36.351	0					41	17	4	0	0	0	0.028476	1	1842	1842		37.159	0	1	865900	+		7661	19789	6186	6196	8739	8739					-0.06325478109522464
EKQFTRERSR	10	Unmodified	_EKQFTRERSR_					0	0	0			REV__ENST00000462927.5_1_22:37678610-37705275:+|nuORF	REV__ENST00000462927.5_1_22:37678610-37705275:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	446.2425842285156	3	446.240858	1335.70075	1.5961	0.00071226	0.37291	0.00016641	1.9691	0.00087867	446.24100701459264	57.983	1.6668	55.191	54.773	56.44	-2.7921					91	32	5	0	0	0	0.53396	1	4159	4159		50.034	6.3827	1	418310	+		7662	26118	6187	6197	8740	8740					0.04632294946532056
EKQKHLDKI	9	Unmodified	_EKQKHLDKI_					0	0	0		ENSG00000163945|ENST00000389851|UVSSA	ENSG00000163945|ENST00000389851|UVSSA	ENSG00000163945|ENST00000389851|UVSSA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	570.3131103515625	2	569.83258	1137.65061	-0.96613	-0.00055053	1.6846	0.00095995	0.71849	0.00040942	570.3341030982725	120.16	0.36684	118.82	118.56	118.93	-1.3444					8	6	2	0	0	0	0.027462	1	11298	11298		25.574	0	1	9815.9			7663	6383	6188	6198	8741	8741					0.08728792288707155
EKQKLRVK	8	Unmodified	_EKQKLRVK_					0	0	0		ENSG00000113140|ENST00000231061|SPARC	ENSG00000113140|ENST00000231061|SPARC	ENSG00000113140|ENST00000231061|SPARC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.3126831054688	2	514.832383	1027.65021	0.73162	0.00037666	-0.8275	-0.00042602	-0.09588	-4.9362E-05	514.8318267717057	35.977	0.9975	33.128	32.94	33.937	-2.849					38	19	3	0	0	0	0.028476	1	1203	1203		39.253	7.723	1	111170			7664	2949	6189	6199	8742	8742					0.13749417359508698
EKQLREVKKQL	11	Unmodified	_EKQLREVKKQL_					0	0	0			REV__ENSG00000120262|ENST00000239374|CCDC170	REV__ENSG00000120262|ENST00000239374|CCDC170	MULTI-MSMS	OvCa99_classI_Rep5	1	466.95355224609375	3	466.952426	1397.83545	-0.36865	-0.00017214	-0.14878	-6.9471E-05	-0.51742	-0.00024161	466.95239081712504	55.406	1.3991	55.406	55.023	56.422	0					90	33	5	0	0	0	0.34309	1	4513	4513		65.278	8.6453	1	11130000	+		7665	18491	6190	6200	8743	8743					0.15244355368463403
EKQQLDEDL	9	Unmodified	_EKQQLDEDL_					0	0	0		ENSG00000081248|ENST00000362061|CACNA1S;CACNA1S|p.L937Sfs*27|1|0.58|ENSG00000081248|chr1:201065882-201065882|G/-|frameshift_variant	ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.3085327148438	2	559.272218	1116.52988	-0.38298	-0.00021419	0.35775	0.00020008	-0.025233	-1.4112E-05	559.2722371993347	49.992	0.69549	49.992	49.593	50.288	0					36	15	3	0	0	0	0.027452	1	3786	3786		58.23	7.0372	1	501770			7666	1658	6191	6201	8744	8744					-0.023720802154457488
EKQRIMLL	8	Unmodified	_EKQRIMLL_					0	0	0		ENSG00000023287|ENST00000025008|RB1CC1;nc|ENSG00000023287|Q8TDY2-2|RB1CC1;ENST00000522957.1_1_8:53536344-53555381:-|nuORF	ENSG00000023287|ENST00000025008|RB1CC1	ENSG00000023287|ENST00000025008|RB1CC1	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.7926635742188	2	515.807519	1029.60049	-0.38642	-0.00019932	-3.4215	-0.0017649	-3.808	-0.0019642	515.8055567814653	77.363	0.15691	75.011	74.89	75.047	-2.3527					4	2	2	0	0	0	0.028476	1	4027	4027		26.796	0	1	7574.6			7667	1037	6192	6202	8745	8745					0.08686966359209691
EKQRLREKL	9	Unmodified	_EKQRLREKL_					0	0	0			REV__ENSG00000248905|ENST00000616417|FMN1	REV__ENSG00000248905|ENST00000616417|FMN1	MULTI-MSMS	OvCa99_classI_Rep5	1	400.578857421875	3	400.578811	1198.7146	1.3024	0.00052171	-1.2816	-0.00051336	0.020829	8.3437E-06	400.57823708170025	30.358	1.1884	30.358	29.935	31.124	0					55	23	4	0	0	0	0.40818	1	1156	1156		51.193	3.2332	1	573870	+		7668	23486	6193	6203	8746	8746					0.12319572445653648
EKQSWRQRLEH	11	Unmodified	_EKQSWRQRLEH_					0	0	0		nc|ENSG00000126001|Q9BV73-2|CEP250;ENSG00000126001|ENST00000397527|CEP250	nc|ENSG00000126001|Q9BV73-2|CEP250	nc|ENSG00000126001|Q9BV73-2|CEP250	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.30596923828125	3	499.595413	1495.76441	1.9601	0.00097924	-0.69125	-0.00034535	1.2688	0.00063389	499.59455671272167	27.743	0.15989	25.033	24.951	25.111	-2.7097					5	3	2	0	0	0	0.026068	1	511	511		21.78	0	1	9174.4			7669	3760	6194	6204	8747	8747					0.036356553836412786
EKQTKLDSKS	10	Unmodified	_EKQTKLDSKS_					0	0	0			REV__ENST00000415694.1_1_9:109932192-109932378:-|nuORF	REV__ENST00000415694.1_1_9:109932192-109932378:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	582.7994384765625	2	582.31696	1162.61937	-1.5159	-0.00088274	-1.3155	-0.00076605	-2.8314	-0.0016488	582.3160052425869	71.237	0.38848	67.781	67.486	67.874	-3.4563					16	7	3	0	0	0	0.026577	1	5392	5392		41.427	0	1	45046	+		7670	25535	6195	6205	8748	8748					0.04456174463939533
EKRAFGIKL	9	Unmodified	_EKRAFGIKL_					0	0	0			REV__tr|A0A553SGC6|A0A553SGC6_NIACItrehaloseoperonrepressorOS=NialliacirculansOX=1397GN=treRPE=4SV=1	REV__tr|A0A553SGC6|A0A553SGC6_NIACItrehaloseoperonrepressorOS=NialliacirculansOX=1397GN=treRPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	531.3281860351562	2	531.326934	1060.63931	-0.79578	-0.00042282	0.2267	0.00012045	-0.56908	-0.00030237	531.3269081854921	50.094	0.91999	50.094	49.899	50.819	0					48	20	4	0	0	0	0.19758	1	3787	3787		76.774	7.9873	1	4103600	+		7671	29685	6196	6206	8749	8749					0.1114201498521652
EKRAFGIKL	9	Unmodified	_EKRAFGIKL_					0	0	0			REV__tr|A0A553SGC6|A0A553SGC6_NIACItrehaloseoperonrepressorOS=NialliacirculansOX=1397GN=treRPE=4SV=1	REV__tr|A0A553SGC6|A0A553SGC6_NIACItrehaloseoperonrepressorOS=NialliacirculansOX=1397GN=treRPE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	531.326934	1060.63931	-0.79578	-0.00042282	0.2267	0.00012045	-0.56908	-0.00030237	531.3269081854921	50.094	0.91999	50.094	49.899	50.819	0	0	0	NaN	76.774	48	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4103600	+		7672	29685	6196	6206							0.1114201498521652
EKRAIKKREKE	11	Unmodified	_EKRAIKKREKE_					0	0	0			REV__CACNA1D|p.Q1955Pfs*19|1|0.09|ENSG00000157388|chr3:53808762-53808763|-/CTCCTCCTTCAGAGAGTGTTGTGCAG|frameshift_variant	REV__CACNA1D|p.Q1955Pfs*19|1|0.09|ENSG00000157388|chr3:53808762-53808763|-/CTCCTCCTTCAGAGAGTGTTGTGCAG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	472.2835693359375	3	472.287808	1413.8416	-6.0447	-0.0028549	-2.5284	-0.0011941	-8.5731	-0.004049	472.28675973301637	159.08	3.3809	157.81	156.71	160.09	-1.267					177	72	4	0	0	0	0.72528	1	13798	13798		11.932	1.3456	1	110830	+		7673	15727	6197	6207	8750	8750					0.15122873599966624
EKRARQEAE	9	Unmodified	_EKRARQEAE_					0	0	0		ARID1A-NUDC|2|fusion;ENSG00000090273|ENST00000321265|NUDC;ARID1A-NUDC|1|fusion	ARID1A-NUDC|2|fusion	ARID1A-NUDC|2|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.7801513671875	2	558.791444	1115.56833	0.17004	9.5016E-05	1.6686	0.0009324	1.8386	0.0010274	558.7924150072084	82.16	1.1646	79.477	79.204	80.368	-2.6829					54	23	4	0	0	0	0.027462	1	6844	6844		31.53	4.8369	1	362880			7674	113	6198	6208	8751	8751					0.015172702097515867
EKREASVE	8	Unmodified	_EKREASVE_					0	0	0			REV__ENST00000471492.2_1_1:161024485-161039631:-|nuORF	REV__ENST00000471492.2_1_1:161024485-161039631:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	474.24658203125	2	474.243264	946.471974	0.13748	6.5198E-05	3.9142	0.0018563	4.0516	0.0019215	474.2450996370353	70.989	1.0602	70.989	70.528	71.589	0					57	26	5	0	0	0	0.50747	1	6836	6836		76.774	3.8949	1	1862600	+		7675	26285	6199	6209	8752	8752					-0.0034029735018066276
EKREASVE	8	Unmodified	_EKREASVE_					0	0	0			REV__ENST00000471492.2_1_1:161024485-161039631:-|nuORF	REV__ENST00000471492.2_1_1:161024485-161039631:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	474.243264	946.471974	0.13748	6.5198E-05	3.9142	0.0018563	4.0516	0.0019215	474.2450996370353	70.989	1.0602	70.989	70.528	71.589	0	0	0	NaN	76.774	57	26	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1862600	+		7676	26285	6199	6209							-0.0034029735018066276
EKRFKCKH	8	Unmodified	_EKRFKCKH_					0	0	0		nc|ENSG00000124092|Q8NI51-2|CTCFL;nc|ENSG00000124092|Q8NI51-11|CTCFL;nc|ENSG00000124092|Q8NI51-6|CTCFL;nc|ENSG00000124092|Q8NI51-5|CTCFL;nc|ENSG00000124092|Q8NI51-10|CTCFL;nc|ENSG00000124092|Q8NI51-8|CTCFL;ENSG00000124092|ENST00000243914|CTCFL;nc|ENSG00000124092|Q8NI51-3|CTCFL;nc|ENSG00000124092|Q8NI51-7|CTCFL	nc|ENSG00000124092|Q8NI51-2|CTCFL	nc|ENSG00000124092|Q8NI51-2|CTCFL	MULTI-MSMS	OvCa99_classI_Rep5	1	539.297607421875	2	538.295111	1074.57567	-0.44574	-0.00023994	1.5601	0.00083978	1.1143	0.00059984	538.2964385197961	24.497	1.0953	24.497	23.793	24.888	0					43	21	4	0	0	0	0.74229	1	473	473		30.504	4.9296	1	138230			7677	14996	6200	6210	8753	8753					0.04136331276481542
EKRFVLVRF	9	Unmodified	_EKRFVLVRF_					0	0	0			REV__ENST00000526352.5_1_11:6621466-6622302:-|nuORF	REV__ENST00000526352.5_1_11:6621466-6622302:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	597.35888671875	2	597.361308	1192.70806	-5.0217	-0.0029997	0.45711	0.00027306	-4.5646	-0.0027267	597.3613502692024	157	0.93945	156.78	156.54	157.48	-0.22696					63	26	4	0	0	0	0.7044	1	15996	15996		16.473	3.0191	1	80526	+		7678	27136	6201	6211	8754	8754					0.11941679284950624
EKRIQKSRRRE	11	Unmodified	_EKRIQKSRRRE_					0	0	0			REV__nc|ENSG00000130224|Q5VUJ6-2|LRCH2	REV__nc|ENSG00000130224|Q5VUJ6-2|LRCH2	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.9588317871094	3	495.962207	1484.86479	-6.4739	-0.0032108	-0.74575	-0.00036986	-7.2196	-0.0035807	495.96176021125257	160.81	2.4584	159.2	158.19	160.65	-1.6101					153	57	4	0	0	0	0.72493	1	15889	15889		16.53	1.8362	1	42976	+		7679	18931	6202	6212	8755	8755					0.14175312437305365
EKRKNKDPL	9	Unmodified	_EKRKNKDPL_					0	0	0		ENSG00000116254|ENST00000262450|CHD5	ENSG00000116254|ENST00000262450|CHD5	ENSG00000116254|ENST00000262450|CHD5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.801513671875	2	564.330205	1126.64586	0.093993	5.3043E-05	-0.57604	-0.00032507	-0.48204	-0.00027203	564.3296510148668	50.716	1.267	47.542	47.205	48.472	-3.1734					45	24	3	0	0	0	0.027462	1	2924	2924		56.721	10.749	1	207510			7680	3168	6203	6213	8756	8756					0.0875990814593024
EKRKVVIPP	9	Unmodified	_EKRKVVIPP_					0	0	0		nc|ENSG00000079150|Q9Y680-1|FKBP7;ENST00000464248.1_1_2:179330632-179343265:-|nuORF;nc|ENSG00000079150|Q9Y680-3|FKBP7;ENSG00000079150|ENST00000424785|FKBP7	nc|ENSG00000079150|Q9Y680-1|FKBP7	nc|ENSG00000079150|Q9Y680-1|FKBP7	MULTI-MSMS	OvCa9_classI_Rep2	2	533.3401489257812	2	533.342584	1064.67061	-5.4005	-0.0028803	1.293	0.00068962	-4.1075	-0.0021907	533.3431631989303	156.44	1.0857	156.21	155.92	157	-0.22696					71	26	4	0	0	0	0.6653	1	15919	15919		24.203	1.1603	1	260540			7681	1605	6204	6214	8757	8757					0.1408658801931324
EKRKVVIPP	9	Unmodified	_EKRKVVIPP_					0	0	0		nc|ENSG00000079150|Q9Y680-1|FKBP7;ENST00000464248.1_1_2:179330632-179343265:-|nuORF;nc|ENSG00000079150|Q9Y680-3|FKBP7;ENSG00000079150|ENST00000424785|FKBP7	nc|ENSG00000079150|Q9Y680-1|FKBP7	nc|ENSG00000079150|Q9Y680-1|FKBP7	MULTI-MSMS	OvCa9_classI_Rep3	3	533.3392333984375	2	533.342584	1064.67061	-5.4486	-0.002906	1.332	0.00071043	-4.1166	-0.0021955	533.3431726379797	156.49	1.098	155.32	155.02	156.12	-1.1707					66	21	4	0	0	0	0.59983	2	13518	13499;13518		31.955	4.0726	1	385900			7682	1605	6204	6214	8758;8759	8759					0.1408658801931324
EKRLQEMEI	9	Unmodified	_EKRLQEMEI_					0	0	0		nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	MULTI-MSMS	OvCa99_classI_Rep5	1	588.3103637695312	2	588.308081	1174.60161	-0.67736	-0.0003985	-0.67915	-0.00039955	-1.3565	-0.00079805	588.3079694282976	59.138	3.8097	59.138	58.852	62.661	0					260	93	6	0	0	0	0.070405	3	5146	5146;5206;5237		107.01	9.8239	1	221970000			7683	14875;1210	6205	6215	8760;8761;8762	8760					0.021291359374799868
EKRLQEMEI	9	Unmodified	_EKRLQEMEI_					0	0	0		nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	MULTI-MSMS	OvCa9_classI_Rep2	2	588.3064575195312	2	588.308081	1174.60161	-1.0695	-0.0006292	1.0508	0.0006182	-0.018703	-1.1003E-05	588.3085738686653	63.984	2.3836	61.259	60.708	63.092	-2.7248					124	45	5	0	0	0	0.043101	5	4847	4847;4852;4871;4877;4883		124.08	11.669	1	1044000			7684	14875;1210	6205	6215	8763;8764;8765;8766;8767	8763					0.021291359374799868
EKRLRLSP	8	Unmodified	_EKRLRLSP_					0	0	0		ENST00000395522.6_1_17:20107834-20107936:+|nuORF	ENST00000395522.6_1_17:20107834-20107936:+|nuORF	ENST00000395522.6_1_17:20107834-20107936:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.8072814941406	2	499.808908	997.603263	-0.72976	-0.00036474	0.81543	0.00040756	0.085666	4.2816E-05	499.8092232070417	74.844	0.87784	72.433	72.142	73.02	-2.4106					27	17	2	0	0	0	0.028476	1	3794	3794		27.882	12.24	1	14442			7685	11293	6206	6216	8768	8768					0.10436557808372982
EKRLRLSP	8	Unmodified	_EKRLRLSP_					0	0	0		ENST00000395522.6_1_17:20107834-20107936:+|nuORF	ENST00000395522.6_1_17:20107834-20107936:+|nuORF	ENST00000395522.6_1_17:20107834-20107936:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	499.808908	997.603263	-0.8465	-0.00042309	1.0498	0.00052472	0.20335	0.00010164	499.80915926871916	74.71	0.83058	72.739	72.534	73.364	-1.9711	0.15283	0.00017306	NaN	27.882	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15869			7686	11293	6206	6216							0.10436557808372982
EKRLSHAIVK	10	Unmodified	_EKRLSHAIVK_					0	0	0		tr|A0A7D6ZSE6|A0A7D6ZSE6_9CLOTMethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metHPE=3SV=1	tr|A0A7D6ZSE6|A0A7D6ZSE6_9CLOTMethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metHPE=3SV=1	tr|A0A7D6ZSE6|A0A7D6ZSE6_9CLOTMethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metHPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	591.8125	2	590.861672	1179.70879	-0.60055	-0.00035484	0.24861	0.0001469	-0.35194	-0.00020795	590.8616302039625	69.67	0.36492	69.67	69.475	69.84	0					13	8	2	0	0	0	0.026891	1	6655	6655		31.53	1.2121	1	309690			7687	35736	6207	6217	8769	8769					0.12612473933972979
EKRPGFLL	8	Unmodified	_EKRPGFLL_					0	0	0		ENST00000484683.1_1_20:36713950-36718152:+|nuORF	ENST00000484683.1_1_20:36713950-36718152:+|nuORF	ENST00000484683.1_1_20:36713950-36718152:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.2994384765625	2	480.287277	958.560001	-0.23017	-0.00011055	-0.26801	-0.00012872	-0.49818	-0.00023927	480.2869010850066	61.879	0.66854	61.879	61.626	62.294	0					33	15	3	0	0	0	0.028476	1	5456	5456		47.916	17.412	1	1066500			7688	12602	6208	6218	8770	8770					0.07906368031103739
EKRQARLI	8	Unmodified	_EKRQARLI_					0	0	0		ENST00000566987.5_1_16:71893923-71901814:-|nuORF;nc|ENSG00000102984|O75541-2|ZNF821;ENSG00000102984|ENST00000425432|ZNF821	ENST00000566987.5_1_16:71893923-71901814:-|nuORF	ENST00000566987.5_1_16:71893923-71901814:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	507.3164978027344	2	507.314358	1012.61416	-0.96299	-0.00048854	3.2619	0.0016548	2.2989	0.0011663	507.3158623915197	117.79	1.8845	116.76	116.44	118.32	-1.0324					99	37	4	0	0	0	0.66057	1	8912	8912		51.335	1.7994	1	576140			7689	2273	6209	6219	8771	8771					0.10835960182669169
EKRQRALI	8	Unmodified	_EKRQRALI_					0	0	0		ENSG00000110756|ENST00000349215|HPS5;nc|ENSG00000110756|Q9UPZ3-2|HPS5	ENSG00000110756|ENST00000349215|HPS5	ENSG00000110756|ENST00000349215|HPS5	MULTI-MSMS	OvCa9_classI_Rep2	2	507.3156433105469	2	507.314358	1012.61416	-1.2891	-0.00065398	3.8453	0.0019508	2.5562	0.0012968	507.3161252150664	116.87	1.585	116.74	116.42	118	-0.12869					86	31	4	0	0	0	0.73494	1	11195	11195		34.173	0	1	305710			7690	2793	6210	6220	8772	8772					0.10835960182669169
EKRSPKARLLK	11	Unmodified	_EKRSPKARLLK_					0	0	0		ENST00000490312.1_1_1:38022595-38023350:+|nuORF;ENSG00000163879|ENST00000652629|DNALI1	ENST00000490312.1_1_1:38022595-38023350:+|nuORF	ENST00000490312.1_1_1:38022595-38023350:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	441.93817138671875	3	442.617377	1324.8303	0.82816	0.00036656	-1.0687	-0.00047303	-0.24056	-0.00010648	442.6169496850531	23.14	0.40549	23.14	22.991	23.397	0					10	7	2	0	0	0	0.026302	1	321	321		22.562	0.78116	1	37952			7691	6372	6211	6221	8773	8773					0.1808809629649204
EKRVKLQI	8	Unmodified	_EKRVKLQI_					0	0	0		ENSG00000169213|ENST00000371655|RAB3B	ENSG00000169213|ENST00000371655|RAB3B	ENSG00000169213|ENST00000371655|RAB3B	MULTI-MSMS	OvCa99_classI_Rep5	1	507.3261413574219	2	507.326934	1012.63931	0.079841	4.0505E-05	-0.55836	-0.00028327	-0.47851	-0.00024276	507.32656629500366	31.931	0.49643	31.931	31.757	32.254	0					28	9	4	0	0	0	0.45246	1	1349	1349		82.305	2.854	1	957570			7692	6987	6212	6222	8774	8774					0.13350014985246617
EKRYRKKEWNR	11	Unmodified	_EKRYRKKEWNR_					0	0	0		ENST00000272647.9_1_2:128641813-128643454:-|nuORF	ENST00000272647.9_1_2:128641813-128643454:-|nuORF	ENST00000272647.9_1_2:128641813-128643454:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.8062744140625	3	531.630457	1591.86954	-1.8969	-0.0010085	-1.4301	-0.0007603	-3.3271	-0.0017688	531.6297387139366	41.942	1.9628	38.961	38.075	40.037	-2.9804					68	37	2	0	0	0	0.026512	1	1880	1880		8.7993	0	1	40757			7693	10000	6213	6223	8775	8775					0.09728196580067561
EKSDDTWYLV	10	Unmodified	_EKSDDTWYLV_					0	0	0			REV__ENSG00000134115|ENST00000446702|CNTN6	REV__ENSG00000134115|ENST00000446702|CNTN6	MULTI-SECPEP	OvCa99_classI_Rep5	1	628.8298950195312	2	628.295693	1254.57683	1.7913	0.0011254	-0.34509	-0.00021682	1.4462	0.00090863	628.2958724638552	129.84	0.61639	129.84	129.68	130.29	0					23	12	3	0	0	0	0.026802	1	15105	15105		9.1829	0	1	62124	+		7694	19175	6214	6224	8776	8776					-0.04027220664283959
EKSDLKEKST	10	Unmodified	_EKSDLKEKST_					0	0	0		ENST00000559862.5_1_15:48451996-48470434:-|nuORF;nc|ENSG00000104177|Q9P2K5-4|MYEF2;nc|ENSG00000104177|Q9P2K5-2|MYEF2;nc|ENSG00000104177|Q9P2K5|MYEF2;ENSG00000104177|ENST00000324324|MYEF2	ENST00000559862.5_1_15:48451996-48470434:-|nuORF	ENST00000559862.5_1_15:48451996-48470434:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	582.3204345703125	2	582.808968	1163.60338	-0.56755	-0.00033077	2.4427	0.0014237	1.8752	0.0010929	582.8103553014201	46.453	0.5957	43.743	43.596	44.192	-2.7097					23	11	3	0	0	0	0.026714	1	2761	2761		28.081	4.5588	1	55845			7695	2357	6215	6225	8777	8777					0.028124682270345147
EKSEGVPVEK	10	Unmodified	_EKSEGVPVEK_					0	0	0		nc|ENSG00000101251|Q5TEA6-2|SEL1L2;ENSG00000101251|ENST00000284951|SEL1L2	nc|ENSG00000101251|Q5TEA6-2|SEL1L2	nc|ENSG00000101251|Q5TEA6-2|SEL1L2	MULTI-MSMS	OvCa99_classI_Rep5	1	551.2943725585938	2	551.292953	1100.57135	-0.45835	-0.00025268	0.54519	0.00030056	0.086842	4.7876E-05	551.2931288402457	29.854	0.45029	29.854	29.686	30.136	0					21	8	4	0	0	0	0.64697	1	1104	1104		36.447	2.2742	1	182120			7696	14929	6216	6226	8778	8778					0.025091005438980574
EKSEYLEVK	9	Unmodified	_EKSEYLEVK_					0	0	0		POLA1-TSPAN7|1|fusion;nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1	POLA1-TSPAN7|1|fusion	POLA1-TSPAN7|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	562.7989501953125	2	562.795329	1123.5761	-0.11026	-6.2056E-05	4.4433	0.0025007	4.333	0.0024386	562.797396202525	39.563	0.46914	39.563	39.287	39.756	0					17	10	3	0	0	0	0.49652	1	2336	2336		42.864	3.6114	1	553720			7697	15511	6217	6227	8779	8779					0.019259846866589214
EKSEYLEVK	9	Unmodified	_EKSEYLEVK_					0	0	0		POLA1-TSPAN7|1|fusion;nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1	POLA1-TSPAN7|1|fusion	POLA1-TSPAN7|1|fusion	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	562.795329	1123.5761	0.40647	0.00022876	7.2168	0.0040616	7.6233	0.0042904	563.3008215303881	42.492	0.35819	39.512	39.312	39.67	-2.9804	-0.025603	0.0025497	NaN	42.864	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15916			7698	15511	6217	6227							0.019259846866589214
EKSFYLGNLLK	11	Unmodified	_EKSFYLGNLLK_					0	0	0			REV__tr|A0A553SH74|A0A553SH74_NIACIEnergy-couplingfactorABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_12355PE=3SV=1	REV__tr|A0A553SH74|A0A553SH74_NIACIEnergy-couplingfactorABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_12355PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	437.9134826660156	3	437.915089	1310.72344	0.19985	8.7516E-05	-3.5409	-0.0015506	-3.341	-0.0014631	437.91351765663677	67.362	1.7287	64.701	64.248	65.977	-2.661					108	34	5	0	0	0	0.69015	2	5267	5256;5267		33.039	4.9693	1	600720	+		7699	29780	6218	6228	8780;8781	8781					0.08050501291472756
EKSFYLGNLLK	11	Unmodified	_EKSFYLGNLLK_					0	0	0			REV__tr|A0A553SH74|A0A553SH74_NIACIEnergy-couplingfactorABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_12355PE=3SV=1	REV__tr|A0A553SH74|A0A553SH74_NIACIEnergy-couplingfactorABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_12355PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	437.9147033691406	3	437.915089	1310.72344	0.92565	0.00040535	-4.2367	-0.0018553	-3.311	-0.00145	437.91321126158874	68.233	1.716	64.743	64.235	65.951	-3.4902					106	34	5	0	0	0	0.54737	1	5059	5059		49.466	12.938	1	1021300	+		7700	29780	6218	6228	8782	8782					0.08050501291472756
EKSFYLGNLLK	11	Unmodified	_EKSFYLGNLLK_					0	0	0			REV__tr|A0A553SH74|A0A553SH74_NIACIEnergy-couplingfactorABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_12355PE=3SV=1	REV__tr|A0A553SH74|A0A553SH74_NIACIEnergy-couplingfactorABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_12355PE=3SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		3	437.915089	1310.72344	0.19985	8.7516E-05	-3.5409	-0.0015506	-3.341	-0.0014631	437.91351765663677	67.362	1.7287	64.701	64.248	65.977	-2.661	-0.039225	0.00044537	NaN	49.466	108	34	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	600720	+		7701	29780	6218	6228							0.08050501291472756
EKSFYLGNLLK	11	Unmodified	_EKSFYLGNLLK_					0	0	0			REV__tr|A0A553SH74|A0A553SH74_NIACIEnergy-couplingfactorABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_12355PE=3SV=1	REV__tr|A0A553SH74|A0A553SH74_NIACIEnergy-couplingfactorABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_12355PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		3	437.915089	1310.72344	1.2348	0.00054072	-5.1867	-0.0022713	-3.9519	-0.0017306	437.9129505868687	67.664	0.49991	64.777	64.639	65.139	-2.8873	0.036757	-0.0017168	NaN	49.466	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7902.4	+		7702	29780	6218	6228							0.08050501291472756
EKSIPVMLFI	10	Unmodified	_EKSIPVMLFI_					0	0	0		tr|A0A553SKS9|A0A553SKS9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_19205PE=4SV=1	tr|A0A553SKS9|A0A553SKS9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_19205PE=4SV=1	tr|A0A553SKS9|A0A553SKS9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_19205PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.3085327148438	2	588.838485	1175.66242	-0.71483	-0.00042092	-2.8077	-0.0016533	-3.5225	-0.0020742	588.836313036513	59.285	0.11118	59.285	59.192	59.304	0					4	2	2	0	0	0	0.026968	1	5086	5086		36.447	12.244	1	1855700			7703	33650	6219	6229	8783	8783					0.08161272987672419
EKSIVLPPLL	10	Unmodified	_EKSIVLPPLL_					0	0	0			REV__tr|A0A7D7A1N2|A0A7D7A1N2_9CLOTAcetylornithineaminotransferaseOS=ClostridiumintestinaleOX=36845GN=argDPE=3SV=1	REV__tr|A0A7D7A1N2|A0A7D7A1N2_9CLOTAcetylornithineaminotransferaseOS=ClostridiumintestinaleOX=36845GN=argDPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	554.8497924804688	2	554.85245	1107.69035	-0.070236	-3.8971E-05	-2.5508	-0.0014153	-2.621	-0.0014543	554.8508851905572	30.111	0.8457	30.111	29.935	30.781	0					35	16	4	0	0	0	0.66721	1	1132	1132		34.173	2.6427	1	403000	+		7704	32501	6220	6230	8784	8784					0.14080919239427203
EKSLAGRVK	9	Unmodified	_EKSLAGRVK_					0	0	0		ENSG00000166046|ENST00000299045|TCP11L2;nc|ENSG00000166046|Q8N4U5-2|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	ENSG00000166046|ENST00000299045|TCP11L2	MULTI-MSMS	OvCa9_classI_Rep2	2	494.3008728027344	2	494.300916	986.587279	-3.5514	-0.0017554	3.5081	0.0017341	-0.043274	-2.139E-05	494.3024982316327	153.87	1.3713	153.64	153.28	154.65	-0.22696					70	29	4	0	0	0	0.51865	1	15664	15664		40.778	5.1599	1	375650			7705	6631	6221	6231	8785	8785					0.09344851571484014
EKSLAKIFAI	10	Unmodified	_EKSLAKIFAI_					0	0	0			REV__tr|A0A553SNW6|A0A553SNW6_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_25145PE=3SV=1	REV__tr|A0A553SNW6|A0A553SNW6_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_25145PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	561.2808227539062	2	560.342249	1118.66995	0.018761	1.0512E-05	-1.272	-0.00071276	-1.2532	-0.00070225	560.3420950788866	43.476	0.81464	40.469	40.273	41.088	-3.0074					41	15	4	0	0	0	0.026994	1	2123	2123		25.574	0	1	93544	+		7706	30465	6222	6232	8786	8786					0.11535748579603933
EKSLAKIFAI	10	Unmodified	_EKSLAKIFAI_					0	0	0			REV__tr|A0A553SNW6|A0A553SNW6_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_25145PE=3SV=1	REV__tr|A0A553SNW6|A0A553SNW6_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_25145PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	560.342249	1118.66995	1.0693	0.00059918	-2.8233	-0.001582	-1.754	-0.00098286	560.8424166283911	43.153	0.74294	40.444	40.163	40.906	-2.7097	-0.012532	-0.0010494	NaN	25.574	34	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26227	+		7707	30465	6222	6232							0.11535748579603933
EKSPLSWQP	9	Unmodified	_EKSPLSWQP_					0	0	0			REV__ENST00000487114.1_1_1:36644989-36645856:+|nuORF	REV__ENST00000487114.1_1_1:36644989-36645856:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3112182617188	2	536.277106	1070.53966	0.21816	0.000117	-0.36846	-0.0001976	-0.1503	-8.0602E-05	536.2765751636044	46.323	0.56327	46.323	46.024	46.587	0					23	12	3	0	0	0	0.027462	1	3276	3276		27.882	0	1	414410	+		7708	18324	6223	6233	8787	8787					0.007211525806042118
EKSQVALVL	9	Unmodified	_EKSQVALVL_					0	0	0			REV__AFAP1-KCNIP4|1|fusion	REV__AFAP1-KCNIP4|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	493.7991943359375	2	493.797675	985.580796	0.76256	0.00037655	1.2142	0.00059956	1.9767	0.00097611	493.79820595607094	81.032	1.6937	81.032	80.487	82.181	0					79	40	4	0	0	0	0.055688	1	8338	8338		115.46	3.8107	1	8580300	+		7709	15575	6224	6234	8788	8788					0.08742913620085346
EKSQVALVL	9	Unmodified	_EKSQVALVL_					0	0	0			REV__AFAP1-KCNIP4|1|fusion	REV__AFAP1-KCNIP4|1|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	493.797675	985.580796	0.87529	0.00043222	3.3886	0.0016733	4.2639	0.0021055	493.79814812094577	82.374	0.36492	80.776	80.645	81.01	-1.5988	-0.12814	0.0021176	NaN	115.46	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22208	+		7710	15575	6224	6234							0.08742913620085346
EKSWPGPL	8	Unmodified	_EKSWPGPL_					0	0	0		ENST00000528667.5_1_1:110162570-110163847:+|nuORF	ENST00000528667.5_1_1:110162570-110163847:+|nuORF	ENST00000528667.5_1_1:110162570-110163847:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	457.2416076660156	2	457.242535	912.470518	-0.48722	-0.00022278	-3.8085	-0.0017414	-4.2958	-0.0019642	457.24064758282594	59.127	2.0507	59.127	58.892	60.943	0					102	51	4	0	0	0	0.47599	1	5058	5058		79.939	0.48821	1	11088000			7711	13260	6225	6235	8789	8789					0.010781133517184571
EKTCGEQDL	9	Unmodified	_EKTCGEQDL_					0	0	0			REV__ENST00000582850.1_1_18:2945885-2946149:-|nuORF	REV__ENST00000582850.1_1_18:2945885-2946149:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.276123046875	2	511.726589	1021.43863	-1.1909	-0.00060941	3.4322	0.0017563	2.2413	0.0011469	512.229838351246	45.524	0.31367	42.485	42.334	42.647	-3.0385					8	5	2	0	0	0	0.027438	1	2325	2325		75.043	23.851	1	6579.8	+		7712	27833	6226	6236	8790	8790					-0.07123667184396254
EKTLLHAIL	9	Unmodified	_EKTLLHAIL_					0	0	0		ENSG00000269964|ENST00000684080|MEI4	ENSG00000269964|ENST00000684080|MEI4	ENSG00000269964|ENST00000684080|MEI4	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.7787475585938	2	519.321317	1036.62808	0.85421	0.00044361	-1.0492	-0.00054487	-0.19498	-0.00010126	519.3204555900242	112.48	0.88789	112.36	111.88	112.77	-0.12174					43	17	3	0	0	0	0.027462	1	10644	10644		42.396	1.618	1	240470			7713	9544	6227	6237	8791	8791					0.11123192891068356
EKTMQYVK	8	Unmodified	_EKTMQYVK_					0	0	0			REV__tr|A0A7D7A1N5|A0A7D7A1N5_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13255PE=4SV=1	REV__tr|A0A7D7A1N5|A0A7D7A1N5_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13255PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.3369750976562	2	513.76806	1025.52157	-0.22374	-0.00011495	-1.5961	-0.00082001	-1.8198	-0.00093496	513.767628634936	66.641	0.68652	66.641	66.212	66.898	0					24	16	2	0	0	0	0.028476	1	6133	6133		37.159	3.6435	1	248760	+		7714	32503	6228	6238	8792	8792					0.00982694334243206
EKTQPHLLPI	10	Unmodified	_EKTQPHLLPI_					0	0	0		nc|ENSG00000151208|Q8TDM6-2|DLG5;ENSG00000151208|ENST00000372391|DLG5;nc|ENSG00000151208|Q8TDM6-3|DLG5;DLG5|p.K1005Gfs*109|1|0.22|ENSG00000151208|chr10:77821432-77821471|TTCTGGGAGGTTTTGGGGGTGTCAGAGGCCCCGCCCTCTT/-|frameshift_variant	nc|ENSG00000151208|Q8TDM6-2|DLG5	nc|ENSG00000151208|Q8TDM6-2|DLG5	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.2946166992188	2	588.342781	1174.67101	2.2284	0.001311	0.12528	7.3709E-05	2.3536	0.0013847	588.3427076049526	99.639	1.0387	99.639	99.154	100.19	0					45	24	4	0	0	0	0.026871	1	11021	11021		10.265	0	1	1654900			7715	5540	6229	6239	8793	8793					0.09065962948511697
EKTSPTLQVIT	11	Unmodified	_EKTSPTLQVIT_					0	0	0		nc|ENSG00000168843|Q8N475-3|FSTL5;nc|ENSG00000168843|Q8N475-2|FSTL5;ENSG00000168843|ENST00000306100|FSTL5	nc|ENSG00000168843|Q8N475-3|FSTL5	nc|ENSG00000168843|Q8N475-3|FSTL5	MULTI-SECPEP	OvCa99_classI_Rep5	1	609.2788696289062	2	608.84281	1215.67107	1.0533	0.00064132	0.44862	0.00027314	1.502	0.00091446	608.8426269771411	151.35	0.50597	151.35	151.15	151.65	0					13	9	2	0	0	0	0.025306	1	17746	17746		37.508	0	1	36075			7716	6947	6230	6240	8794	8794					0.07185918157847482
EKTYEVTKIT	10	Unmodified	_EKTYEVTKIT_					0	0	0		tr|A0A7D6W409|A0A7D6W409_9CLOTPhageproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11770PE=4SV=1	tr|A0A7D6W409|A0A7D6W409_9CLOTPhageproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11770PE=4SV=1	tr|A0A7D6W409|A0A7D6W409_9CLOTPhageproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11770PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	607.3155517578125	2	606.329536	1210.64452	2.1869	0.001326	-0.9039	-0.00054806	1.283	0.00077794	606.3289648517326	106.7	0.50926	105.44	105.11	105.62	-1.267					14	9	2	0	0	0	0.026714	1	7559	7559		42.864	0	1	37409			7717	35466	6231	6241	8795	8795					0.0476222926652099
EKVDIWSF	8	Unmodified	_EKVDIWSF_					0	0	0		nc|ENSG00000073803|O43283-5|MAP3K13;nc|ENSG00000073803|O43283-4|MAP3K13;ENSG00000073803|ENST00000265026|MAP3K13;ENST00000547020.1_1_12:53878838-53879309:-|nuORF;ENST00000433092.5_1_3:185155245-185169222:+|nuORF;nc|ENSG00000139625|Q12852|MAP3K12;ENSG00000139625|ENST00000547488|MAP3K12	nc|ENSG00000073803|O43283-5|MAP3K13;nc|ENSG00000139625|Q12852|MAP3K12	nc|ENSG00000139625|Q12852|MAP3K12	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.2607421875	2	512.260925	1022.5073	0.021344	1.0934E-05	-4.2474	-0.0021758	-4.226	-0.0021648	512.2586975137657	56.587	1.3182	53.293	52.87	54.188	-3.2944					92	25	5	0	0	0	0.48084	1	3665	3665		79.451	7.5735	1	1906500			7718	1502;4790	6232	6242	8796	8796					-0.0030563482237084827
EKVGSSVKHLK	11	Unmodified	_EKVGSSVKHLK_					0	0	0		nc|ENSG00000140263|Q00796-2|SORD;ENSG00000140263|ENST00000267814|SORD	nc|ENSG00000140263|Q00796-2|SORD	nc|ENSG00000140263|Q00796-2|SORD	MULTI-MSMS	OvCa99_classI_Rep5	1	606.359375	2	606.358962	1210.70337	-0.43822	-0.00026572	-1.7931	-0.0010873	-2.2314	-0.001353	606.357718226344	68.058	0.97376	68.058	67.842	68.815	0					41	23	2	0	0	0	0.58642	1	6396	6396		22.58	0	1	4045400			7719	4828	6233	6243	8797	8797					0.10644750351502807
EKVIIIKEE	9	Unmodified	_EKVIIIKEE_					0	0	0			REV__ENSG00000135205|ENST00000285871|CCDC146	REV__ENSG00000135205|ENST00000285871|CCDC146	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.8278198242188	2	550.831714	1099.64888	0.62359	0.00034349	-3.5273	-0.001943	-2.9037	-0.0015995	550.82969174874	33.221	1.3886	30.526	30.203	31.591	-2.6954					53	27	2	0	0	0	0.61365	1	899	899		30.318	3.5216	1	344190	+		7720	19264	6234	6244	8798	8798					0.10303738480092761
EKVLKKISR	9	Unmodified	_EKVLKKISR_					0	0	0		ENSG00000155265|ENST00000370602|GOLGA7B	ENSG00000155265|ENST00000370602|GOLGA7B	ENSG00000155265|ENST00000370602|GOLGA7B	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.8596801757812	2	550.861141	1099.70773	0.60137	0.00033127	-0.19761	-0.00010886	0.40376	0.00022241	550.8607980085386	32.86	1.1654	30.165	29.782	30.947	-2.6954					52	23	3	0	0	0	0.61365	1	803	803		30.318	1.1477	1	105340			7721	5775	6235	6245	8799	8799					0.1618625956507458
EKVLPYVH	8	Unmodified	_EKVLPYVH_					0	0	0		tr|A0A553SIA7|A0A553SIA7_NIACISpoVRfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_14525PE=4SV=1	tr|A0A553SIA7|A0A553SIA7_NIACISpoVRfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_14525PE=4SV=1	tr|A0A553SIA7|A0A553SIA7_NIACISpoVRfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_14525PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.29315185546875	2	492.779285	983.544017	0.59207	0.00029176	-4.1819	-0.0020607	-3.5898	-0.001769	492.7772017229013	83.933	0.61986	81.27	80.974	81.594	-2.6629					29	12	3	0	0	0	0.028476	1	7015	7015		29.842	0	1	144290			7722	33360	6236	6246	8800	8800					0.051586617941893564
EKVNRLINY	9	Unmodified	_EKVNRLINY_					0	0	0			REV__ENSG00000174718|ENST00000312561|RESF1	REV__ENSG00000174718|ENST00000312561|RESF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.8167724609375	2	574.824755	1147.63496	1.6001	0.0009198	-3.5955	-0.0020668	-1.9953	-0.001147	575.3251181561395	112.57	0.67405	112.57	112.39	113.06	0					23	14	2	0	0	0	0.027462	1	12803	12803		53.351	0.41475	1	451650	+		7723	21848	6237	6247	8801	8801					0.0670450577167685
EKVPGPPQVK	10	Unmodified	_EKVPGPPQVK_					0	0	0			REV__ENSG00000015676|ENST00000355451|NUDCD3	REV__ENSG00000015676|ENST00000355451|NUDCD3	MULTI-MSMS	OvCa99_classI_Rep5	1	539.8179321289062	2	539.816399	1077.61824	0.00055715	3.0076E-07	0.20589	0.00011114	0.20644	0.00011144	539.8163512390445	71.608	1.2659	71.608	71.308	72.574	0					82	30	4	0	0	0	0.39172	1	6923	6923		69.628	3.1983	1	8415900	+		7724	16522	6238	6248	8802	8802					0.0825400488570267
EKVPGPPQVK	10	Unmodified	_EKVPGPPQVK_					0	0	0			REV__ENSG00000015676|ENST00000355451|NUDCD3	REV__ENSG00000015676|ENST00000355451|NUDCD3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	539.816399	1077.61824	0.51952	0.00028045	-0.82474	-0.00044521	-0.30521	-0.00016476	539.8158117129611	74.04	0.29655	71.553	71.373	71.67	-2.4873	-0.027659	-0.0009535	NaN	69.628	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11613	+		7725	16522	6238	6248							0.0825400488570267
EKVSYLRPL	9	Unmodified	_EKVSYLRPL_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-MSMS	OvCa9_classI_Rep2	2	552.8240356445312	2	552.824224	1103.63389	1.4579	0.00080598	-1.5531	-0.00085861	-0.095196	-5.2626E-05	552.8231418896985	126.07	1.3319	125.83	125.55	126.89	-0.2359					72	26	4	0	0	0	0.53483	1	12331	12331		39.253	2.0937	1	197830			7726	8917	6239	6249	8803	8803					0.08622291402753035
EKVTLDPE	8	Unmodified	_EKVTLDPE_					0	0	0		TMOD2|p.E280Kfs*5|1|0.28|ENSG00000128872|chr15:51798302-51798302|G/-|frameshift_variant;nc|ENSG00000128872|Q9NZR1-2|TMOD2;ENSG00000128872|ENST00000249700|TMOD2	TMOD2|p.E280Kfs*5|1|0.28|ENSG00000128872|chr15:51798302-51798302|G/-|frameshift_variant	TMOD2|p.E280Kfs*5|1|0.28|ENSG00000128872|chr15:51798302-51798302|G/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	465.744384765625	2	465.742565	929.470577	1.8635	0.00086789	1.9667	0.00091599	3.8302	0.0017839	465.74331450609435	87.24	0.94852	87.24	87.013	87.962	0					65	22	4	0	0	0	0.53252	1	9224	9224		74.255	5.4682	1	5621200			7727	3909	6240	6250	8804	8804					0.003020685610522378
EKVVKPLD	8	Unmodified	_EKVVKPLD_					0	0	0		ENSG00000182253|ENST00000336292|SYNM;nc|ENSG00000182253|O15061-2|SYNM;SYNM|p.V1009Afs*14|1|0.19|ENSG00000182253|chr15:99131385-99131386|-/CTCGGTGTACGGGCAGATCCACA|frameshift_variant	ENSG00000182253|ENST00000336292|SYNM	ENSG00000182253|ENST00000336292|SYNM	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.26251220703125	2	464.279118	926.543683	-0.72493	-0.00033657	2.0325	0.00094364	1.3075	0.00060706	464.27988675339327	79.825	0.52695	77.073	76.75	77.277	-2.7514					15	10	2	0	0	0	0.028476	1	6455	6455		18.324	0	1	16401			7728	7984	6241	6251	8805	8805					0.07747242074333371
EKVVPESRTP	10	Unmodified	_EKVVPESRTP_					0	0	0		ENST00000491278.5_1_2:128392149-128394989:+|nuORF	ENST00000491278.5_1_2:128392149-128394989:+|nuORF	ENST00000491278.5_1_2:128392149-128394989:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.265380859375	2	571.31422	1140.61389	0.40933	0.00023386	-0.56159	-0.00032085	-0.15226	-8.6988E-05	571.3139112944194	81.268	0.57654	81.268	81.037	81.613	0					22	13	2	0	0	0	0.026782	1	8347	8347		45.972	0	1	966130			7729	12710	6242	6252	8806	8806					0.049204956721496274
EKWFAVEY	8	Unmodified	_EKWFAVEY_					0	0	0			REV__nc|ENSG00000185436|Q8IU57-2|IFNLR1	REV__nc|ENSG00000185436|Q8IU57-2|IFNLR1	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.2603759765625	2	536.260925	1070.5073	-0.86027	-0.00046133	-3.8869	-0.0020844	-4.7472	-0.0025457	536.2587818261826	86.964	1.8044	84.337	84.054	85.858	-2.6269					95	35	4	0	0	0	0.53531	2	7420	7408;7420		73.975	5.4358	1	1290100	+		7730	22502	6243	6253	8807;8808	8808					-0.025136348223895766
EKWLLPSLGLR	11	Unmodified	_EKWLLPSLGLR_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	437.91461181640625	3	437.930962	1310.77106	1.152	0.00050451	3.1738	0.0013899	4.3258	0.0018944	438.2674674410891	68.137	0.19379	64.647	64.526	64.72	-3.4902					5	3	2	0	0	0	0.025863	1	5047	5047		31.068	13.901	1	7069.8	+		7731	20615	6244	6254	8809	8809					0.12810200282319784
EKYGDIAKL	9	Unmodified	_EKYGDIAKL_					0	0	0		tr|A0A7D6VT96|A0A7D6VT96_9CLOTIron-containingalcoholdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07140PE=4SV=1	tr|A0A7D6VT96|A0A7D6VT96_9CLOTIron-containingalcoholdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07140PE=4SV=1	tr|A0A7D6VT96|A0A7D6VT96_9CLOTIron-containingalcoholdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07140PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.7738037109375	2	518.787307	1035.56006	1.2415	0.0006441	-3.948	-0.0020482	-2.7065	-0.0014041	518.7852326664782	128.34	0.78918	127.25	127.02	127.81	-1.0933					25	15	2	0	0	0	0.027447	1	10110	10110		56.721	12.604	1	55329			7732	35099	6245	6255	8810	8810					0.04370323240414109
EKYITLLKP	9	Unmodified	_EKYITLLKP_					0	0	0			REV__ARMC9-PSMD1|2|fusion	REV__ARMC9-PSMD1|2|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	552.8377075195312	2	552.8368	1103.65905	2.5772	0.0014248	-0.5177	-0.00028621	2.0595	0.0011386	552.8363896537086	107.73	2.556	107.73	107.44	110	0					157	58	4	0	0	0	0.44568	1	12248	12248		47.657	13.485	1	10910000	+		7733	15663	6246	6256	8811	8811					0.1113634620535322
EKYNADWCHKY	11	Unmodified	_EKYNADWCHKY_					0	0	0		tr|A0A553SFL1|A0A553SFL1_NIACIDUF2268domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09115PE=4SV=1	tr|A0A553SFL1|A0A553SFL1_NIACIDUF2268domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09115PE=4SV=1	tr|A0A553SFL1|A0A553SFL1_NIACIDUF2268domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09115PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.25543212890625	3	486.215321	1455.62413	0.051324	2.4955E-05	0.0016464	8.0049E-07	0.052971	2.5755E-05	486.2151811370859	70.815	0.58803	70.815	70.603	71.191	0					30	14	3	0	0	0	0.026068	1	6827	6827		21.78	5.2506	1	859160			7734	33047	6247	6257	8812	8812					-0.08545264664940078
EKYRIGTHG	9	Unmodified	_EKYRIGTHG_					0	0	0			REV__nc|ENSG00000137747|Q9BYE2-4|TMPRSS13	REV__nc|ENSG00000137747|Q9BYE2-4|TMPRSS13	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.3281860351562	2	530.780348	1059.54614	-0.81833	-0.00043435	-0.06418	-3.4066E-05	-0.88251	-0.00046842	530.7803960037563	50.094	0.3886	50.094	49.899	50.288	0					14	8	2	0	0	0	0.027426	1	3787	3787		76.774	12.567	1	282410	+		7735	19470	6248	6258	8813	8813					0.018750905319848243
EKYVEKEEQI	10	Unmodified	_EKYVEKEEQI_					0	0	0			REV__tr|A0A7D6VRP9|A0A7D6VRP9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01610PE=4SV=1	REV__tr|A0A7D6VRP9|A0A7D6VRP9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01610PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	432.2234802246094	3	432.222359	1293.64525	-0.36077	-0.00015593	-0.44341	-0.00019165	-0.80418	-0.00034758	432.222200899437	59.592	2.2773	59.592	59.265	61.542	0					136	55	5	0	0	0	0.38633	1	5153	5153		70.399	5.121	1	33411000	+		7736	31433	6249	6259	8814	8814					0.010170239155968375
ELAAGYTPIP	10	Unmodified	_ELAAGYTPIP_					0	0	0			REV__ENSG00000167281|ENST00000693108|RBFOX3	REV__ENSG00000167281|ENST00000693108|RBFOX3	MULTI-MSMS	OvCa99_classI_Rep5	1	516.2744750976562	2	516.274032	1030.53351	1.4651	0.00075638	-3.2984	-0.0017029	-1.8333	-0.00094648	516.2723593444842	80.811	1.0134	80.811	80.274	81.288	0					47	23	3	0	0	0	0.3976	1	8329	8329		68.787	5.253	1	3049500	+		7737	21267	6250	6260	8815	8815					0.01946634349087617
ELADAIDELV	10	Unmodified	_ELADAIDELV_					0	0	0			REV__tr|A0A7D6VPL7|A0A7D6VPL7_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12020PE=4SV=1	REV__tr|A0A7D6VPL7|A0A7D6VPL7_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12020PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2671508789062	2	544.279512	1086.54447	0.13527	7.3627E-05	3.3382	0.0018169	3.4735	0.0018905	544.2811296066207	114.41	0.68415	114.41	114.15	114.84	0					19	14	2	0	0	0	0.026802	1	13059	13059		34.173	0	1	70399	+		7738	31260	6251	6261	8816	8816					0.00465991932696852
ELAEEEPHLV	10	Unmodified	_ELAEEEPHLV_					0	0	0		ENST00000524939.1_1_1:160252194-160254914:-|nuORF;ENSG00000162735|ENST00000368072|PEX19;ENST00000533104.1_1_1:160252288-160254904:-|nuORF;ENST00000532508.5_1_1:160249625-160254863:-|nuORF	ENST00000524939.1_1_1:160252194-160254914:-|nuORF	ENST00000524939.1_1_1:160252194-160254914:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.30078125	2	583.290411	1164.56627	1.7696	0.0010322	1.1403	0.0006651	2.9099	0.0016973	583.2911437942803	92.869	0.58566	92.869	92.677	93.263	0					30	13	3	0	0	0	0.026915	1	10058	10058		14.865	0	1	564030			7739	6224	6252	6262	8817	8817					-0.009432033187067645
ELAEEVLLP	9	Unmodified	_ELAEEVLLP_					0	0	0			REV__nc|ENSG00000165006|Q9NZ09-2|UBAP1	REV__nc|ENSG00000165006|Q9NZ09-2|UBAP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.765625	2	506.78169	1011.54883	-0.51832	-0.00026268	1.561	0.00079108	1.0427	0.0005284	506.7820585698806	63.845	0.62526	60.37	60.061	60.686	-3.475					19	12	2	0	0	0	0.027462	1	4475	4475		55.504	16.483	1	43137	+		7740	21048	6253	6263	8818	8818					0.04351501146300052
ELAEFKTKI	9	Unmodified	_ELAEFKTKI_					0	0	0			REV__tr|A0A553SK43|A0A553SK43_NIACITranslationinitiationfactorIF-3OS=NialliacirculansOX=1397GN=infCPE=3SV=1	REV__tr|A0A553SK43|A0A553SK43_NIACITranslationinitiationfactorIF-3OS=NialliacirculansOX=1397GN=infCPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.7984008789062	2	539.810782	1077.60701	1.28	0.00069094	0.40276	0.00021742	1.6827	0.00090836	539.8104552268609	83.195	0.30049	83.195	83.035	83.335	0					11	6	2	0	0	0	0.027295	1	8636	8636		64.207	0	1	163710	+		7741	30074	6254	6264	8819	8819					0.0713118279156788
ELAELNGPE	9	Unmodified	_ELAELNGPE_					0	0	0			REV__ENSG00000100156|ENST00000681075|SLC16A8	REV__ENSG00000100156|ENST00000681075|SLC16A8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.27325439453125	2	486.237647	970.460741	-0.42888	-0.00020854	0.94988	0.00046187	0.521	0.00025333	486.23792913418714	52.469	1.3588	49.261	48.893	50.252	-3.208					53	26	3	0	0	0	0.027462	1	3231	3231		21.96	8.1846	1	240000	+		7742	17375	6255	6265	8820	8820					-0.02567119444324817
ELAENKLIL	9	Unmodified	_ELAENKLIL_					0	0	0		tr|A0A7D6ZET1|A0A7D6ZET1_9CLOTDUF4364familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14935PE=4SV=1	tr|A0A7D6ZET1|A0A7D6ZET1_9CLOTDUF4364familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14935PE=4SV=1	tr|A0A7D6ZET1|A0A7D6ZET1_9CLOTDUF4364familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14935PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	521.8133544921875	2	521.810782	1041.60701	1.6848	0.00087912	0.23429	0.00012225	1.919	0.0010014	521.8107103877087	137.18	0.62558	137.18	136.92	137.54	0					31	12	4	0	0	0	0.16562	1	15998	15998		82.241	7.9855	1	322210			7743	35488	6256	6266	8821	8821					0.08787182791570558
ELAEPIKLN	9	Unmodified	_ELAEPIKLN_					0	0	0			REV__tr|A0A7D7A324|A0A7D7A324_9CLOTMethionine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=metGPE=3SV=1	REV__tr|A0A7D7A324|A0A7D7A324_9CLOTMethionine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=metGPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.7410888671875	2	513.795132	1025.57571	2.43	0.0012485	-0.31108	-0.00015983	2.1189	0.0010887	513.7945741772832	86.332	0.76768	86.332	85.994	86.761	0					29	18	2	0	0	0	0.027411	1	9144	9144		74.255	12.148	1	1122200	+		7744	32565	6257	6267	8822	8822					0.06394609757489889
ELAERFPNI	9	Unmodified	_ELAERFPNI_					0	0	0		tr|A0A553SIV4|A0A553SIV4_NIACIDegVfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15545PE=4SV=1	tr|A0A553SIV4|A0A553SIV4_NIACIDegVfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15545PE=4SV=1	tr|A0A553SIV4|A0A553SIV4_NIACIDegVfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15545PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	544.788818359375	2	544.790381	1087.56621	-0.68861	-0.00037515	-0.77804	-0.00042387	-1.4666	-0.00079902	544.7898124491704	104.61	1.1634	104.61	104.28	105.44	0					48	26	2	0	0	0	0.094616	1	11726	11726		98.629	13.714	1	3473600			7745	33429	6258	6268	8823	8823					0.025928414719373905
ELAFAIGKN	9	Unmodified	_ELAFAIGKN_					0	0	0			REV__tr|A0A7D7A6L9|A0A7D7A6L9_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_11295PE=4SV=1	REV__tr|A0A7D7A6L9|A0A7D7A6L9_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_11295PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.2468566894531	2	481.768917	961.523281	2.6461	0.0012748	1.8253	0.00087936	4.4714	0.0021542	481.7684666564881	97.218	0.55596	97.218	96.923	97.479	0					32	12	4	0	0	0	0.02741	1	10651	10651		60.972	28.16	1	596220	+		7746	32661	6259	6269	8824	8824					0.040980714145121055
ELAHRELL	8	Unmodified	_ELAHRELL_					0	0	0		CCT3-ARHGEF11|1|fusion;nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11;ENST00000487682.5_1_1:156905794-156908468:-|nuORF	CCT3-ARHGEF11|1|fusion	CCT3-ARHGEF11|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.77484130859375	2	490.779816	979.545079	-0.85478	-0.00041951	-1.0981	-0.00053894	-1.9529	-0.00095844	490.77901427015087	33.897	0.19249	33.897	33.824	34.017	0					5	3	2	0	0	0	0.028476	1	1588	1588		29.15	12.676	1	66055			7747	202	6260	6270	8825	8825					0.054488761630864246
ELAIEGVLL	9	Unmodified	_ELAIEGVLL_					0	0	0		tr|A0A553SHM6|A0A553SHM6_NIACIParAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_13240PE=4SV=1	tr|A0A553SHM6|A0A553SHM6_NIACIParAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_13240PE=4SV=1	tr|A0A553SHM6|A0A553SHM6_NIACIParAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_13240PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.783447265625	2	478.786776	955.558998	-0.038442	-1.8405E-05	-2.8045	-0.0013428	-2.843	-0.0013612	478.7851914560515	48.223	1.1291	45.115	44.632	45.761	-3.1077					26	21	2	0	0	0	0.027426	1	2663	2663		20.947	0	1	17522			7748	33287	6261	6271	8826	8826					0.07944108871538447
ELAIQFYEI	9	Unmodified	_ELAIQFYEI_					0	0	0		nc|ENSG00000276141|Q1A5X7-2|WHAMMP3;nc|ENSG00000276141|Q1A5X7|WHAMMP3	nc|ENSG00000276141|Q1A5X7-2|WHAMMP3	nc|ENSG00000276141|Q1A5X7-2|WHAMMP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.8058471679688	2	563.294965	1124.57538	0.97386	0.00054857	-0.33454	-0.00018845	0.63931	0.00036012	563.2945674466287	74.22	0.88365	74.22	73.792	74.676	0					19	15	2	0	0	0	0.027462	1	7286	7286		40.778	31.595	1	877280			7749	15373	6262	6272	8827	8827					0.018071900376071426
ELAIRELR	8	Unmodified	_ELAIRELR_					0	0	0			REV__tr|A0A7D6VNX6|A0A7D6VNX6_9CLOTRibosomalRNAsmallsubunitmethyltransferaseEOS=ClostridiumintestinaleOX=36845GN=HZF06_16470PE=3SV=1	REV__tr|A0A7D6VNX6|A0A7D6VNX6_9CLOTRibosomalRNAsmallsubunitmethyltransferaseEOS=ClostridiumintestinaleOX=36845GN=HZF06_16470PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	501.30157470703125	2	500.300916	998.587279	-0.086321	-4.3186E-05	3.5698	0.001786	3.4835	0.0017428	500.30246290396695	103.74	0.47267	102.31	102.08	102.55	-1.4347					12	8	2	0	0	0	0.028476	1	7213	7213		60.972	9.6365	1	10156	+		7750	31211	6263	6273	8828	8828					0.08792851571467963
ELAIVPNVR	9	Unmodified	_ELAIVPNVR_					0	0	0		ENSG00000121716|ENST00000609309|PILRB	ENSG00000121716|ENST00000609309|PILRB	ENSG00000121716|ENST00000609309|PILRB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.27880859375	2	505.803291	1009.59203	-0.11704	-5.9201E-05	-1.3315	-0.0006735	-1.4486	-0.0007327	505.8025584069005	61.086	0.39925	57.656	57.444	57.844	-3.43					11	7	2	0	0	0	0.027462	1	4168	4168		37.159	9.2769	1	138850			7751	3495	6264	6274	8829	8829					0.08761735714222141
ELAKDVILL	9	Unmodified	_ELAKDVILL_					0	0	0			REV__nc|ENSG00000110321|P78344-2|EIF4G2	REV__nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.7879333496094	2	507.3157	1012.61685	2.0224	0.001026	1.3252	0.00067231	3.3476	0.0016983	507.31589462447903	116.54	1.1353	116.54	115.73	116.86	0					48	24	4	0	0	0	0.027462	1	13354	13354		32.812	0	1	502450	+		7752	17979	6265	6275	8830	8830					0.11104370796954299
ELAKVFPF	8	Unmodified	_ELAKVFPF_					0	0	0			REV__ENSG00000116981|ENST00000235628|NT5C1A	REV__ENSG00000116981|ENST00000235628|NT5C1A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.30157470703125	2	475.770929	949.527304	-0.11812	-5.6199E-05	-3.9062	-0.0018585	-4.0244	-0.0019147	475.76890452340564	66.501	0.63515	63.01	62.66	63.295	-3.4902					26	12	3	0	0	0	0.028476	1	4807	4807		33.516	0	1	228080	+		7753	18327	6266	6276	8831	8831					0.05052160908235237
ELALINTQA	9	Unmodified	_ELALINTQA_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.7619323730469	2	486.771657	971.528761	0.36736	0.00017882	1.06	0.00051598	1.4274	0.0006948	486.77191112939056	60.387	0.84508	56.957	56.749	57.594	-3.43					27	16	3	0	0	0	0.027411	1	4084	4084		45.972	0	1	33004			7754	4788	6267	6277	8832	8832					0.041857502063294305
ELALLEGIVA	10	Unmodified	_ELALLEGIVA_					0	0	0			REV__tr|A0A553ST92|A0A553ST92_NIACIDUF554domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04520PE=4SV=1	REV__tr|A0A553ST92|A0A553ST92_NIACIDUF554domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04520PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.7920532226562	2	514.305332	1026.59611	-1.6748	-0.00086135	-0.72345	-0.00037207	-2.3982	-0.0012334	514.8042343819528	119.62	0.47417	118.28	118.03	118.51	-1.3444					15	8	3	0	0	0	0.026956	1	11213	11213		34.173	4.331	1	23993	+		7755	30932	6268	6278	8833	8833					0.08387780417297108
ELALLRLPA	9	Unmodified	_ELALLRLPA_					0	0	0			REV__tr|A0A553SHT9|A0A553SHT9_NIACIDEAD/DEAHboxhelicaseOS=NialliacirculansOX=1397GN=CEQ21_13620PE=3SV=1	REV__tr|A0A553SHT9|A0A553SHT9_NIACIDEAD/DEAHboxhelicaseOS=NialliacirculansOX=1397GN=CEQ21_13620PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	499.2696533203125	2	498.316035	994.617516	-1.1069	-0.0005516	0.81818	0.00040771	-0.28874	-0.00014389	498.3163004802068	102.67	1.3319	101.99	101.64	102.97	-0.68459					46	26	3	0	0	0	0.027462	1	9421	9421		11.511	0	1	71185	+		7756	29838	6269	6279	8834	8834					0.1199921023664956
ELALLRLPA	9	Unmodified	_ELALLRLPA_					0	0	0			REV__tr|A0A553SHT9|A0A553SHT9_NIACIDEAD/DEAHboxhelicaseOS=NialliacirculansOX=1397GN=CEQ21_13620PE=3SV=1	REV__tr|A0A553SHT9|A0A553SHT9_NIACIDEAD/DEAHboxhelicaseOS=NialliacirculansOX=1397GN=CEQ21_13620PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	498.316035	994.617516	-0.074474	-3.7111E-05	-0.40313	-0.00020089	-0.47761	-0.000238	498.3156564540683	103.57	1.5159	102.13	101.76	103.28	-1.4347	0.04175	-0.00068758	NaN	29.15	51	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85234	+		7757	29838	6269	6279							0.1199921023664956
ELALSTCLEL	10	Unmodified	_ELALSTCLEL_					0	0	0		ENST00000397988.7_1_18:61645690-61649045:+|nuORF	ENST00000397988.7_1_18:61645690-61649045:+|nuORF	ENST00000397988.7_1_18:61645690-61649045:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	546.2881469726562	2	546.286282	1090.55801	-0.56606	-0.00030923	0.47535	0.00025968	-0.09071	-4.9554E-05	546.2863258210423	137.01	1.2304	136.78	136.4	137.63	-0.22697					54	25	3	0	0	0	0.67931	1	13608	13608		32.812	0	1	145390			7758	11360	6270	6280	8835	8835					0.016355264402818648
ELAMKVDEP	9	Unmodified	_ELAMKVDEP_					0	0	0			REV__ENSG00000123838|ENST00000367070|C4BPA	REV__ENSG00000123838|ENST00000367070|C4BPA	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2744750976562	2	516.257525	1030.5005	2.0385	0.0010524	0.88648	0.00045765	2.925	0.00151	516.2578147976479	80.509	0.88654	80.509	80.234	81.12	0					26	20	2	0	0	0	0.02744	1	8329	8329		44.377	3.8046	1	242520	+		7759	18653	6271	6281	8836	8836					-0.013533157652545924
ELAPIFPD	8	Unmodified	_ELAPIFPD_					0	0	0		tr|A0A553SFJ4|A0A553SFJ4_NIACIGlobinOS=NialliacirculansOX=1397GN=CEQ21_09010PE=3SV=1	tr|A0A553SFJ4|A0A553SFJ4_NIACIGlobinOS=NialliacirculansOX=1397GN=CEQ21_09010PE=3SV=1	tr|A0A553SFJ4|A0A553SFJ4_NIACIGlobinOS=NialliacirculansOX=1397GN=CEQ21_09010PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	451.7534484863281	2	451.236919	900.459284	-0.13791	-6.2231E-05	3.2322	0.0014585	3.0942	0.0013962	451.23738801224255	54.887	0.84772	54.887	54.632	55.48	0					52	19	4	0	0	0	0.028476	1	4458	4458		7.6903	0	1	614920			7760	33042	6272	6282	8837	8837					0.005072912575656119
ELAQLRLLN	9	Unmodified	_ELAQLRLLN_					0	0	0		nc|ENSG00000116691|Q5JXC2-2|MIIP;ENSG00000116691|ENST00000235332|MIIP	nc|ENSG00000116691|Q5JXC2-2|MIIP	nc|ENSG00000116691|Q5JXC2-2|MIIP	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.8336181640625	2	535.321848	1068.62914	0.044199	2.3661E-05	2.0032	0.0010723	2.0474	0.001096	535.3226885874836	101.69	1.1482	101.69	101.4	102.55	0					50	26	4	0	0	0	0.027462	1	11410	11410		37.159	0	1	2442200			7761	3199	6273	6283	8838	8838					0.09757407259985484
ELAQMDATL	9	Unmodified	_ELAQMDATL_					0	0	0			REV__ENST00000354485.5_1_9:676972-730286:+|nuORF	REV__ENST00000354485.5_1_9:676972-730286:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.74041748046875	2	496.241875	990.469197	-0.94661	-0.00046975	2.624	0.0013022	1.6774	0.00083241	496.2434009291543	37.368	0.64404	37.368	36.977	37.621	0					19	13	2	0	0	0	0.027462	1	2036	2036		19.997	0	1	492580	+		7762	17835	6274	6284	8839	8839					-0.02641888799348635
ELARLALQD	9	Unmodified	_ELARLALQD_					0	0	0			REV__ENSG00000104518|ENST00000262580|GSDMD	REV__ENSG00000104518|ENST00000262580|GSDMD	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.8143920898438	2	514.790381	1027.56621	-0.38518	-0.00019829	-0.13564	-6.9828E-05	-0.52082	-0.00026811	514.7905242845058	96.524	0.6199	94.695	94.571	95.191	-1.8286					14	11	2	0	0	0	0.027402	1	6348	6348		66.429	18.772	1	11470	+		7763	17667	6275	6285	8840	8840					0.05352841471949432
ELARLFKK	8	Unmodified	_ELARLFKK_					0	0	0		tr|A0A7D6VXN8|A0A7D6VXN8_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12720PE=4SV=1	tr|A0A7D6VXN8|A0A7D6VXN8_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12720PE=4SV=1	tr|A0A7D6VXN8|A0A7D6VXN8_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12720PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.78094482421875	2	502.816202	1003.61785	2.1526	0.0010824	0.24118	0.00012127	2.3938	0.0012037	502.8160900328728	84.952	0.28798	84.952	84.758	85.046	0					10	6	2	0	0	0	0.028476	1	8868	8868		31.955	0	1	156010			7764	35293	6276	6286	8841	8841					0.11618629956524273
ELARLQLPL	9	Unmodified	_ELARLQLPL_					0	0	0			REV__ENST00000535572.5_1_12:993817-993844:+|nuORF	REV__ENST00000535572.5_1_12:993817-993844:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	527.34912109375	2	526.826766	1051.63898	-1.5533	-0.00081831	1.0226	0.00053876	-0.53064	-0.00027956	526.8272971238373	101.48	1.7272	99.87	99.446	101.17	-1.6053					81	32	4	0	0	0	0.027441	1	6953	6953		49.442	0	1	434610	+		7765	27287	6277	6287	8842	8842					0.11522595265387281
ELATAVKARI	10	Unmodified	_ELATAVKARI_					0	0	0		nc|nan|Q9BWL3-4|C1orf43;nc|nan|Q9BWL3-2|C1orf43;ENSG00000143612|ENST00000368521|C1orf43	nc|nan|Q9BWL3-4|C1orf43	nc|nan|Q9BWL3-4|C1orf43	MULTI-MSMS	OvCa99_classI_Rep5	1	536.3321533203125	2	536.329673	1070.64479	2.1597	0.0011583	-0.28145	-0.00015095	1.8782	0.0010073	536.3293435689474	78.343	1.0738	78.343	77.757	78.83	0					62	25	5	0	0	0	0.24109	1	7926	7926		88.177	3.0161	1	6297600			7766	5075	6278	6288	8843	8843					0.11229693777045213
ELATVHLLF	9	Unmodified	_ELATVHLLF_					0	0	0			REV__ENSG00000135632|ENST00000389501|SMYD5	REV__ENSG00000135632|ENST00000389501|SMYD5	MULTI-MSMS	OvCa9_classI_Rep2	2	521.799072265625	2	521.800217	1041.58588	0.7122	0.00037162	-2.7144	-0.0014164	-2.0022	-0.0010447	521.798133945385	124.62	1.1845	124.39	124.03	125.21	-0.23193					47	23	3	0	0	0	0.27546	1	12108	12108		65.803	19.851	1	135240	+		7767	19307	6279	6289	8844	8844					0.0667521748271156
ELATVHLLF	9	Unmodified	_ELATVHLLF_					0	0	0			REV__ENSG00000135632|ENST00000389501|SMYD5	REV__ENSG00000135632|ENST00000389501|SMYD5	MULTI-MSMS	OvCa9_classI_Rep3	3	521.7979736328125	2	521.800217	1041.58588	1.4995	0.00078246	-3.035	-0.0015837	-1.5355	-0.00080122	521.7982124194368	125.43	1.0915	124.38	124.11	125.2	-1.0519					48	20	3	0	0	0	0.36502	1	9788	9788		55.504	7.8469	1	205620	+		7768	19307	6279	6289	8845	8845					0.0667521748271156
ELATVHLLF	9	Unmodified	_ELATVHLLF_					0	0	0			REV__ENSG00000135632|ENST00000389501|SMYD5	REV__ENSG00000135632|ENST00000389501|SMYD5	MULTI-MATCH	OvCa99_classI_Rep5	1		2	521.800217	1041.58588	0.6186	0.00032278	1.5407	0.00080395	2.1593	0.0011267	521.8009234299777	124.5	0.5059	124.5	124.24	124.74	0	0.083376	0.0015142	NaN	65.803	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191510	+		7769	19307	6279	6289							0.0667521748271156
ELAVEVKQP	9	Unmodified	_ELAVEVKQP_					0	0	0		nc|ENSG00000113494|P16471-9|PRLR;ENST00000509934.1_1_5:35068382-35086329:-|nuORF;nc|ENSG00000113494|P16471-8|PRLR;nc|ENSG00000113494|P16471-3|PRLR;nc|ENSG00000113494|P16471-7|PRLR;nc|ENSG00000113494|P16471-6|PRLR;nc|ENSG00000113494|P16471-5|PRLR;nc|ENSG00000113494|P16471-4|PRLR;nc|ENSG00000113494|P16471-2|PRLR;ENSG00000113494|ENST00000618457|PRLR	nc|ENSG00000113494|P16471-9|PRLR	nc|ENSG00000113494|P16471-9|PRLR	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3152160644531	2	506.787307	1011.56006	-0.50286	-0.00025484	-0.0067004	-3.3957E-06	-0.50956	-0.00025824	506.78734396908334	105.19	1.4087	103.18	102.9	104.31	-2.0161					58	27	3	0	0	0	0.02744	1	9611	9611		29.17	0	1	149110			7770	14967	6280	6290	8846	8846					0.05474323240434842
ELAVICANYDI	11	Unmodified	_ELAVICANYDI_					0	0	0		nc|ENSG00000109618|Q9HD40-3|SEPSECS;ENSG00000109618|ENST00000382103|SEPSECS	nc|ENSG00000109618|Q9HD40-3|SEPSECS	nc|ENSG00000109618|Q9HD40-3|SEPSECS	MULTI-MSMS	OvCa9_classI_Rep4_	4	408.5391540527344	3	408.537401	1222.59037	1.8761	0.00076647	1.4509	0.00059273	3.327	0.0013592	408.537876346655	37.503	1.2438	34.611	34.293	35.536	-2.8925					50	24	3	0	0	0	0.68709	1	1384	1384		34.087	0	1	158230			7771	2720	6281	6291	8847	8847					-0.012016861566962689
ELAVICANYDI	11	Unmodified	_ELAVICANYDI_					0	0	0		nc|ENSG00000109618|Q9HD40-3|SEPSECS;ENSG00000109618|ENST00000382103|SEPSECS	nc|ENSG00000109618|Q9HD40-3|SEPSECS	nc|ENSG00000109618|Q9HD40-3|SEPSECS	MULTI-MATCH	OvCa9_classI_Rep2	2		3	408.537401	1222.59037	-0.9521	-0.00038897	4.2006	0.0017161	3.2485	0.0013271	408.53905049823106	37.601	0.68744	34.891	34.633	35.32	-2.7097	0.14011	0.0020476	NaN	34.087	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39569			7772	2720	6281	6291							-0.012016861566962689
ELAWRHNL	8	Unmodified	_ELAWRHNL_					0	0	0		ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1;ENST00000412649.5_1_22:19170842-19171202:-|nuORF	ENSG00000070371|ENST00000427926|CLTCL1	ENSG00000070371|ENST00000427926|CLTCL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.7562866210938	2	519.777608	1037.54066	1.2402	0.00064464	-1.0272	-0.0005339	0.21306	0.00011074	519.7781491022109	83.861	0.75813	83.861	83.377	84.135	0					25	17	2	0	0	0	0.028476	1	8696	8696		45.952	18.07	1	159600			7773	1426	6282	6292	8848	8848					0.023394117401721815
ELAYCLQKC	9	Unmodified	_ELAYCLQKC_					0	0	0		nc|ENSG00000184979|Q9UMW8-2|USP18;ENSG00000184979|ENST00000215794|USP18	nc|ENSG00000184979|Q9UMW8-2|USP18	nc|ENSG00000184979|Q9UMW8-2|USP18	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3333129882812	2	535.754095	1069.49364	1.2057	0.00064594	-0.96162	-0.00051519	0.24403	0.00013074	535.75304615428	143.29	0.58836	143.29	142.98	143.56	0					18	11	2	0	0	0	0.027462	1	16766	16766		31.955	12.595	1	53553			7774	8208	6283	6293	8849	8849					-0.03832951917502214
ELAYLSIKI	9	Unmodified	_ELAYLSIKI_					0	0	0			REV__tr|A0A7D6ZZ20|A0A7D6ZZ20_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18605PE=4SV=1	REV__tr|A0A7D6ZZ20|A0A7D6ZZ20_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18605PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.2682495117188	2	525.3157	1048.61685	1.9894	0.0010451	0.3576	0.00018785	2.347	0.0012329	525.3157696498532	120.8	0.26974	120.8	120.65	120.92	0					7	5	2	0	0	0	0.027447	1	13894	13894		56.721	5.3856	1	84689	+		7775	32396	6284	6294	8850	8850					0.09448370796940253
ELAYLSIKI	9	Unmodified	_ELAYLSIKI_					0	0	0			REV__tr|A0A7D6ZZ20|A0A7D6ZZ20_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18605PE=4SV=1	REV__tr|A0A7D6ZZ20|A0A7D6ZZ20_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18605PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	525.3157	1048.61685	-1.0606	-0.00055717	1.0348	0.0005436	-0.025821	-1.3564E-05	525.3161648460432	120.73	0.69054	120.54	120.31	121	-0.19718	-0.13757	0.00052903	NaN	56.721	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39902	+		7776	32396	6284	6294							0.09448370796940253
ELAYLSIKI	9	Unmodified	_ELAYLSIKI_					0	0	0			REV__tr|A0A7D6ZZ20|A0A7D6ZZ20_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18605PE=4SV=1	REV__tr|A0A7D6ZZ20|A0A7D6ZZ20_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18605PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	525.3157	1048.61685	0.81688	0.00042912	-0.94862	-0.00049833	-0.13174	-6.9207E-05	525.3150730242975	121.69	0.78508	120.66	120.43	121.22	-1.0286	-0.01135	-0.0015548	NaN	56.721	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78667	+		7777	32396	6284	6294							0.09448370796940253
ELAYLSIKI	9	Unmodified	_ELAYLSIKI_					0	0	0			REV__tr|A0A7D6ZZ20|A0A7D6ZZ20_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18605PE=4SV=1	REV__tr|A0A7D6ZZ20|A0A7D6ZZ20_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18605PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	525.3157	1048.61685	-0.5744	-0.00030174	0.47409	0.00024905	-0.10031	-5.2692E-05	525.3158085407964	122.05	0.71424	120.7	120.46	121.18	-1.3479	0.024768	-6.0072E-05	NaN	56.721	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61894	+		7778	32396	6284	6294							0.09448370796940253
ELCCRWLKP	9	Unmodified	_ELCCRWLKP_					0	0	0		nc|ENSG00000155592|Q63HK3-2|ZKSCAN2;ENST00000565590.1_1_16:25258001-25268460:-|nuORF;ENSG00000155592|ENST00000328086|ZKSCAN2	nc|ENSG00000155592|Q63HK3-2|ZKSCAN2	nc|ENSG00000155592|Q63HK3-2|ZKSCAN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.8218994140625	2	574.291179	1146.56781	1.897	0.0010894	2.5987	0.0014924	4.4957	0.0025818	574.2924990411727	110.4	0.88951	110.4	110.18	111.07	0					31	19	3	0	0	0	0.027441	1	12560	12560		58.782	0	1	268300			7779	5791	6285	6295	8851	8851					0.0003843596468868782
ELCFPKKPD	9	Unmodified	_ELCFPKKPD_					0	0	0			REV__ENSG00000100055|ENST00000248901|CYTH4	REV__ENSG00000100055|ENST00000248901|CYTH4	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.2996215820312	2	538.775885	1075.53722	2.1007	0.0011318	-2.6315	-0.0014178	-0.53081	-0.00028599	538.774277570951	95.645	0.374	95.645	95.495	95.869	0					14	8	2	0	0	0	0.027433	1	10448	10448		64.207	0.7808	1	356880	+		7780	17357	6286	6296	8852	8852					0.002469808513069438
ELCILLPL	8	Carbamidomethyl (C)	_ELC(Carbamidomethyl (C))ILLPL_	ELC(1)ILLPL		ELC(87)ILLPL		0	1	0		ENST00000591595.5_1_19:11130023-11172489:+|nuORF	ENST00000591595.5_1_19:11130023-11172489:+|nuORF	ENST00000591595.5_1_19:11130023-11172489:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.7837829589844	2	485.785721	969.55689	-0.19196	-9.3253E-05	4.1653	0.0020235	3.9734	0.0019302	485.7871986127588	73.623	0.83917	71.223	70.636	71.475	-2.3999					21	15	2	0	0	0	0.028476	1	6007	6007		86.935	12.418	1	21597			7781	14122	6287	6297	8853	8853	160				0.07089356862081786
ELCKGATEMEA	11	Unmodified	_ELCKGATEMEA_					0	0	0			REV__tr|A0A7D6VR59|A0A7D6VR59_9CLOTCarbohydratekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18105PE=4SV=1	REV__tr|A0A7D6VR59|A0A7D6VR59_9CLOTCarbohydratekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18105PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	591.8121948242188	2	591.262481	1180.51041	2.1036	0.0012438	0.24683	0.00014594	2.3505	0.0013897	591.7636491211748	117.81	0.23402	117.81	117.65	117.88	0					6	4	2	0	0	0	0.025701	1	13493	13493		36.447	13.867	1	86899	+		7782	31390	6288	6298	8854	8854					-0.0726249582219225
ELCKHAEEGL	10	Unmodified	_ELCKHAEEGL_					0	0	0			REV__ENSG00000006194|ENST00000219069|ZNF263	REV__ENSG00000006194|ENST00000219069|ZNF263	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.3275146484375	2	564.771331	1127.52811	2.1342	0.0012053	1.336	0.00075454	3.4702	0.0019599	564.771636229646	125.99	0.32758	125.99	125.81	126.13	0					10	6	2	0	0	0	0.026915	1	14548	14548		27.882	17.017	1	34626	+		7783	16412	6289	6299	8855	8855					-0.03055412505023014
ELCLLFGHAS	10	Unmodified	_ELCLLFGHAS_					0	0	0			REV__ENST00000515684.1_1_4:48712603-48782104:-|nuORF	REV__ENST00000515684.1_1_4:48712603-48782104:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	545.3172607421875	2	545.273509	1088.53247	-2.6404	-0.0014397	4.1987	0.0022894	1.5583	0.00084968	545.2757943270365	142.08	0.54633	141.07	140.73	141.28	-1.0106					12	10	2	0	0	0	0.026802	1	11725	11725		34.173	5.023	1	12900	+		7784	27003	6290	6300	8856	8856					-0.008259032914565978
ELCLRLVAL	9	Unmodified	_ELCLRLVAL_					0	0	0		ENST00000482950.5_2_7:150758322-150759078:+|nuORF	ENST00000482950.5_2_7:150758322-150759078:+|nuORF	ENST00000482950.5_2_7:150758322-150759078:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	515.30712890625	2	515.309895	1028.60524	-0.149	-7.6783E-05	-1.2403	-0.00063914	-1.3893	-0.00071593	515.309204834114	98.038	3.959	97.145	96.727	100.69	-0.89306					142	79	4	0	0	0	0.33652	1	8859	8859		58.782	3.2778	1	1571300			7785	12580	6291	6301	8857	8857					0.09207850501957182
ELCRLPTSTN	10	Unmodified	_ELCRLPTSTN_					0	0	0			REV__ENST00000493504.1_1_19:59086942-59092775:+|nuORF	REV__ENST00000493504.1_1_19:59086942-59092775:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.3024291992188	2	567.284605	1132.55466	-0.097311	-5.5203E-05	-1.765	-0.0010012	-1.8623	-0.0010564	567.2842740056678	58.83	0.23862	58.83	58.613	58.852	0					10	5	3	0	0	0	0.026867	1	5015	5015		28.081	9.8194	1	338330	+		7786	26706	6292	6302	8858	8858					-0.006317236136965221
ELDARFRPN	9	Unmodified	_ELDARFRPN_					0	0	0		tr|A0A553SFW3|A0A553SFW3_NIACIUncharacterizedproteinYhaNAAAdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09590PE=4SV=1	tr|A0A553SFW3|A0A553SFW3_NIACIUncharacterizedproteinYhaNAAAdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09590PE=4SV=1	tr|A0A553SFW3|A0A553SFW3_NIACIUncharacterizedproteinYhaNAAAdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09590PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	559.290771484375	2	559.291079	1116.56761	1.0679	0.00059727	-2.1062	-0.001178	-1.0383	-0.0005807	559.289786703432	123.89	1.2949	122.85	122.51	123.81	-1.0377					64	24	4	0	0	0	0.38529	1	9613	9613		53.351	3.8154	1	395230			7787	33084	6293	6303	8859	8859					0.013984755607225452
ELDASSNTM	9	Unmodified	_ELDASSNTM_					0	0	0			REV__ENSG00000148143|ENST00000277225|ZNF462	REV__ENSG00000148143|ENST00000277225|ZNF462	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.7809143066406	2	484.205489	966.396426	0.1158	5.6072E-05	0.20664	0.00010005	0.32244	0.00015613	484.2054190194507	58.261	0.62834	58.261	58.027	58.655	0					32	14	3	0	0	0	0.027418	1	4993	4993		40.778	12.896	1	907310	+		7788	20090	6294	6304	8860	8860					-0.08811642592786484
ELDDNAGLSR	10	Unmodified	_ELDDNAGLSR_					0	0	0		ENSG00000135298|ENST00000370598|ADGRB3;nc|ENSG00000135298|O60242-2|ADGRB3	ENSG00000135298|ENST00000370598|ADGRB3	ENSG00000135298|ENST00000370598|ADGRB3	MULTI-SECPEP	OvCa9_classI_Rep3	3	545.7841796875	2	545.262185	1088.50982	1.3854	0.00075539	3.3439	0.0018233	4.7293	0.0025787	545.26327774986	112.73	0.39454	111.65	111.46	111.86	-1.0753					9	7	2	0	0	0	0.026681	1	8256	8256		36.447	3.6343	1	8281.3			7789	4361	6295	6305	8861	8861					-0.03089831155398315
ELDDRYQKYVS	11	Unmodified	_ELDDRYQKYVS_					0	0	0			REV__nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L	REV__nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.7813415527344	3	472.564896	1414.67286	0.011712	5.5347E-06	-3.006	-0.0014205	-2.9943	-0.001415	472.56342562473276	60.579	0.53831	60.579	60.277	60.816	0					25	12	3	0	0	0	0.026187	1	5292	5292		24.276	16.471	1	299490	+		7790	17620	6296	6306	8862	8862					-0.017890728242036857
ELDHTCFAVLV	11	Unmodified	_ELDHTCFAVLV_					0	0	0			REV__LLGL2-TMEM104|1|fusion	REV__LLGL2-TMEM104|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	623.3555908203125	2	623.810456	1245.60636	1.6768	0.001046	-2.4058	-0.0015007	-0.72892	-0.00045471	624.3108218946946	118.48	0.60925	118.48	118.11	118.72	0					25	12	4	0	0	0	0.02557	1	13588	13588		31.53	2.3803	1	86005	+		7791	28620	6297	6307	8863	8863					-0.006619799198006149
ELDILKKLD	9	Unmodified	_ELDILKKLD_					0	0	0			REV__nc|ENSG00000197555|O43166-3|SIPA1L1	REV__nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.8455200195312	2	543.823889	1085.63323	-0.97778	-0.00053174	0.36798	0.00020012	-0.6098	-0.00033162	543.8244422983896	44.256	0.22675	44.256	44.123	44.35	0					6	4	2	0	0	0	0.027462	1	2981	2981		39.253	0	1	114670	+		7792	22933	6298	6308	8864	8864					0.09383451963026346
ELDIRGKLYL	10	Unmodified	_ELDIRGKLYL_					0	0	0		nc|ENSG00000141994|Q96G46-3|DUS3L	nc|ENSG00000141994|Q96G46-3|DUS3L	nc|ENSG00000141994|Q96G46-3|DUS3L	MULTI-MSMS	OvCa9_classI_Rep2	2	407.2391357421875	3	407.239684	1218.69722	-0.828	-0.0003372	-1.2342	-0.0005026	-2.0622	-0.0008398	407.2391021217938	35.225	0.99369	32.515	32.257	33.251	-2.7097					44	19	3	0	0	0	0.73938	1	1417	1417		26.063	0.9374	1	97695			7793	15067	6299	6309	8865	8865					0.09662232120012959
ELDLARERR	9	Unmodified	_ELDLARERR_					0	0	0		nc|ENSG00000178965|Q5RHP9-2|ERICH3;ENST00000433746.2_1_1:75036803-75045091:-|nuORF;ENSG00000178965|ENST00000326665|ERICH3	nc|ENSG00000178965|Q5RHP9-2|ERICH3	nc|ENSG00000178965|Q5RHP9-2|ERICH3	MULTI-MSMS	OvCa9_classI_Rep2	2	579.3225708007812	2	579.322911	1156.63127	-1.5587	-0.00090299	1.3959	0.0008087	-0.16277	-9.4294E-05	579.3236686827205	50.2	1.538	47.406	47.033	48.571	-2.794					84	30	4	0	0	0	0.42676	1	3219	3219		49.442	3.4693	1	611210			7794	7787	6300	6310	8866	8866					0.05921835997787639
ELDMPSRTT	9	Unmodified	_ELDMPSRTT_					0	0	0		ENSG00000101350|ENST00000375712|KIF3B;nc|ENSG00000101350|O15066-2|KIF3B	ENSG00000101350|ENST00000375712|KIF3B	ENSG00000101350|ENST00000375712|KIF3B	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.3209228515625	2	525.250231	1048.48591	0.10284	5.4019E-05	-0.58777	-0.00030873	-0.48493	-0.00025471	525.2497328018259	109.18	0.79114	108.97	108.49	109.28	-0.20828					18	15	2	0	0	0	0.027462	1	10189	10189		36.447	10.997	1	8127.2			7795	2170	6301	6311	8867	8867					-0.0363938791340388
ELDSLTSAQS	10	Unmodified	_ELDSLTSAQS_					0	0	0			REV__chr16:18372663-18374953|242|11.13|0.0|20.09|-|1|None,PKD1P5|1	REV__chr16:18372663-18374953|242|11.13|0.0|20.09|-|1|None,PKD1P5|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.282470703125	2	525.751118	1049.48768	-0.88128	-0.00046333	-2.494	-0.0013112	-3.3753	-0.0017746	525.7490267961119	68.122	0.88137	68.122	67.683	68.564	0					24	21	2	0	0	0	0.026624	1	6442	6442		46.457	4.0606	1	218430	+		7796	15927	6302	6312	8868	8868					-0.035080556237971905
ELDTYLIPQI	10	Unmodified	_ELDTYLIPQI_					0	0	0		nc|ENSG00000012048|P38398-8|BRCA1;nc|ENSG00000012048|P38398-4|BRCA1;ENSG00000012048|ENST00000357654|BRCA1;nc|ENSG00000012048|P38398-7|BRCA1;nc|ENSG00000012048|P38398-5|BRCA1;nc|ENSG00000012048|P38398-3|BRCA1	nc|ENSG00000012048|P38398-8|BRCA1	nc|ENSG00000012048|P38398-8|BRCA1	MULTI-MSMS	OvCa9_classI_Rep2	2	402.21954345703125	3	402.220178	1203.63871	0.63051	0.0002536	-2.5404	-0.0010218	-1.9098	-0.00076818	402.219087303316	68.613	1.5415	65.993	65.671	67.213	-2.6203					93	30	5	0	0	0	0.66944	1	5417	5417		33.922	3.3528	1	637410			7797	971	6303	6313	8869	8869					0.04503130754869744
ELDVRITAL	9	Unmodified	_ELDVRITAL_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	OvCa9_classI_Rep3	3	515.2998657226562	2	515.300581	1028.58661	0.83581	0.00043069	-0.7626	-0.00039297	0.07321	3.7725E-05	515.299976511872	104.08	1.3531	102.65	102.39	103.75	-1.4347					65	25	3	0	0	0	0.1804	2	7236	7236;7249		79.713	7.8351	1	459290			7798	1144	6304	6314	8870;8871	8870					0.07346012131756652
ELDVRITAL	9	Unmodified	_ELDVRITAL_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.2987670898438	2	515.300581	1028.58661	-0.50013	-0.00025772	0.54002	0.00027827	0.039894	2.0557E-05	515.3008077340658	104.73	1.3153	102.61	102.38	103.69	-2.1192					43	25	2	0	0	0	0.083631	1	9489	9489		101.6	22.15	1	436850			7799	1144	6304	6314	8872	8872					0.07346012131756652
ELEALTDLW	9	Unmodified	_ELEALTDLW_					0	0	0		NCOA3-EYA2|1|fusion;NCOA3-EYA2|5|fusion;NCOA3-EYA2|7|fusion;NCOA3-EYA2|3|fusion;ENSG00000064655|ENST00000327619|EYA2;CCDC85A-EYA2|1|fusion;nc|ENSG00000064655|O00167-2|EYA2;ZMYND8-EYA2|1|fusion;ZMYND8-EYA2|3|fusion;ZMYND8-EYA2|7|fusion;ZMYND8-EYA2|5|fusion	NCOA3-EYA2|1|fusion;ZMYND8-EYA2|1|fusion	ZMYND8-EYA2|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.3173828125	2	545.276772	1088.53899	-0.30545	-0.00016656	-3.1804	-0.0017342	-3.4858	-0.0019007	545.27489900134	142.53	0.7251	141.09	140.78	141.51	-1.4427					22	13	2	0	0	0	0.027462	1	13909	13909		6.7355	0	1	19960			7800	36318;15423	6305	6315	8873	8873					-0.0017368685910241766
ELEAVKQAKLK	11	Unmodified	_ELEAVKQAKLK_					0	0	0		nc|ENSG00000008294|O60271-9|SPAG9;nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;ENST00000514613.5_1_17:49067015-49156972:-|nuORF;nc|ENSG00000008294|O60271-5|SPAG9;nc|ENSG00000008294|O60271-3|SPAG9	nc|ENSG00000008294|O60271-9|SPAG9	nc|ENSG00000008294|O60271-9|SPAG9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	628.3814086914062	2	628.88227	1255.74999	-2.9991	-0.0018861	4.345	0.0027325	1.3459	0.00084639	629.385766544447	151.23	4.9128	149.8	147.87	152.79	-1.4344					230	115	3	0	0	0	0.025638	1	15070	15070		23.523	2.5758	1	502210			7801	915	6306	6316	8874	8874					0.13234190182788552
ELECLLKKM	9	Unmodified	_ELECLLKKM_					0	0	0		nc|ENSG00000183137|Q8IYX8-2|CEP57L1;ENSG00000183137|ENST00000517392|CEP57L1	nc|ENSG00000183137|Q8IYX8-2|CEP57L1	nc|ENSG00000183137|Q8IYX8-2|CEP57L1	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.7813110351562	2	553.801045	1105.58754	-0.56953	-0.00031541	0.50766	0.00028114	-0.061874	-3.4266E-05	553.8011810562813	61.468	0.75338	61.468	61.2	61.953	0					37	17	3	0	0	0	0.027462	1	5473	5473		27.882	8.5223	1	1108900			7802	8054	6307	6317	8875	8875					0.0389676718480132
ELEDDEAGKV	10	Unmodified	_ELEDDEAGKV_					0	0	0			REV__ENSG00000109111|ENST00000314616|SUPT6H	REV__ENSG00000109111|ENST00000314616|SUPT6H	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.2853393554688	2	552.756401	1103.49825	0.89065	0.00049231	1.2222	0.00067556	2.1128	0.0011679	552.7555306129696	110.44	0.36842	108.84	108.6	108.96	-1.6011					10	6	2	0	0	0	0.027632	1	10156	10156		110.12	11.49	1	8210.8	+		7803	17918	6308	6318	8876	8876					-0.049360729693717076
ELEDKLHSQ	9	Unmodified	_ELEDKLHSQ_					0	0	0			REV__nc|ENSG00000156206|Q6P656-2|CFAP161	REV__nc|ENSG00000156206|Q6P656-2|CFAP161	MULTI-MSMS	OvCa99_classI_Rep5	1	549.7777709960938	2	549.774928	1097.5353	-0.073945	-4.0653E-05	3.589	0.0019732	3.5151	0.0019325	549.776331708367	62.269	0.86458	62.269	61.912	62.777	0					53	20	4	0	0	0	0.2784	2	5526	5526;5538		65.465	16.024	1	3800600	+		7804	20466	6309	6319	8877;8878	8877					-0.009563566329461537
ELEDKMSDM	9	Unmodified	_ELEDKMSDM_					0	0	0			REV__tr|A0A7D6VPG5|A0A7D6VPG5_9CLOTV-typeprotonATPasesubunitEOS=ClostridiumintestinaleOX=36845GN=atpEPE=3SV=1	REV__tr|A0A7D6VPG5|A0A7D6VPG5_9CLOTV-typeprotonATPasesubunitEOS=ClostridiumintestinaleOX=36845GN=atpEPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	549.2291259765625	2	549.228107	1096.44166	3.037	0.001668	-0.78141	-0.00042917	2.2556	0.0012388	549.2274796439616	88.561	0.62395	88.561	88.298	88.922	0					33	14	3	0	0	0	0.12515	1	9438	9438		90.37	8.0648	1	2725200	+		7805	31246	6310	6320	8879	8879					-0.10270160121899607
ELEDKSAQY	9	Unmodified	_ELEDKSAQY_					0	0	0			REV__nc|ENSG00000128596|Q96JN2-2|CCDC136	REV__nc|ENSG00000128596|Q96JN2-2|CCDC136	MULTI-MSMS	OvCa99_classI_Rep5	1	541.7557373046875	2	541.753661	1081.49277	-0.011447	-6.2014E-06	4.0794	0.00221	4.0679	0.0022038	541.7557383124529	32.328	2.2527	32.328	31.956	34.209	0					82	45	2	0	0	0	0.51865	1	1409	1409		40.778	3.6191	1	417770	+		7806	18863	6311	6321	8880	8880					-0.044717517611843505
ELEDVFVY	8	Unmodified	_ELEDVFVY_					0	0	0		nc|ENSG00000119866|Q9H165-8|BCL11A	nc|ENSG00000119866|Q9H165-8|BCL11A	nc|ENSG00000119866|Q9H165-8|BCL11A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.8135070800781	2	507.244941	1012.47533	0.45717	0.0002319	-3.195	-0.0016206	-2.7378	-0.0013887	507.2427712002062	109.98	0.57932	108.38	108.12	108.7	-1.6011					18	10	3	0	0	0	0.028476	1	10082	10082		35.201	8.4046	1	19471			7807	14986	6312	6322	8881	8881					-0.030410472961875712
ELEEESHTL	9	Unmodified	_ELEEESHTL_					0	0	0			REV__nc|ENSG00000125970|Q9UKM9-2|RALY	REV__nc|ENSG00000125970|Q9UKM9-2|RALY	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.3377075195312	2	543.751118	1085.48768	-0.80611	-0.00043832	0.55119	0.00029971	-0.25492	-0.00013861	543.7509132445388	64.327	0.32912	64.327	64.132	64.461	0					12	7	2	0	0	0	0.027462	1	5839	5839		55.504	23.974	1	201800	+		7808	18763	6313	6323	8882	8882					-0.05164055623777131
ELEEKHRL	8	Unmodified	_ELEEKHRL_					0	0	0			REV__ENSG00000136546|ENST00000643258|SCN7A	REV__ENSG00000136546|ENST00000643258|SCN7A	MULTI-MSMS	OvCa99_classI_Rep5	1	527.2890625	2	527.288005	1052.56146	-0.45784	-0.00024141	0.54412	0.00028691	0.086273	4.5491E-05	527.288196839023	73.134	0.9147	73.134	72.877	73.792	0					47	22	3	0	0	0	0.40148	1	7157	7157		87.754	0.057861	1	3754500	+		7809	19393	6314	6324	8883	8883					0.03727957329192577
ELEEKWRK	8	Unmodified	_ELEEKWRK_					0	0	0			REV__tr|A0A7D6VVR3|A0A7D6VVR3_9CLOTNAD(P)H-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01425PE=4SV=1	REV__tr|A0A7D6VVR3|A0A7D6VVR3_9CLOTNAD(P)H-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01425PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	559.3336791992188	2	559.303655	1116.59276	0.021431	1.1987E-05	1.9441	0.0010873	1.9655	0.0010993	559.3046666919624	105.01	0.19518	104.58	104.46	104.65	-0.43642					6	3	2	0	0	0	0.028476	1	9729	9729		79.451	0	1	19749	+		7810	31732	6315	6325	8884	8884					0.03912530363277256
ELEELHSPTE	10	Unmodified	_ELEELHSPTE_					0	0	0			REV__nc|ENSG00000165929|Q8N9U0-2|TC2N	REV__nc|ENSG00000165929|Q8N9U0-2|TC2N	MULTI-MSMS	OvCa99_classI_Rep5	1	592.2811889648438	2	592.2775	1182.54045	2.3004	0.0013625	4.1662	0.0024675	6.4666	0.00383	592.279969343895	85.933	3.0527	85.933	85.624	88.677	0					207	73	5	0	0	0	0.37436	1	9174	9174		71.877	8.5712	1	82131000	+		7811	21140	6316	6326	8885	8885					-0.043520975609681045
ELEELTYLG	9	Unmodified	_ELEELTYLG_					0	0	0			REV__ENSG00000187240|ENST00000375735|DYNC2H1	REV__ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.78369140625	2	533.76878	1065.52301	0.69639	0.00037171	0.80354	0.0004289	1.4999	0.00080061	533.7692606339915	79.194	1.3449	76.854	76.315	77.66	-2.3399					39	26	2	0	0	0	0.027462	1	4260	4260		18.324	1.8513	1	88811	+		7812	22636	6317	6327	8886	8886					-0.007133930959980717
ELEEPLEPK	9	Unmodified	_ELEEPLEPK_					0	0	0		ENSG00000275591|ENST00000618742|XKR5	ENSG00000275591|ENST00000618742|XKR5	ENSG00000275591|ENST00000618742|XKR5	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.3089599609375	2	542.282054	1082.54956	-0.29749	-0.00016132	1.0398	0.00056387	0.74233	0.00040255	542.2825411757126	65.251	0.87575	65.251	64.955	65.831	0					37	21	2	0	0	0	0.027462	1	6035	6035		15.642	0	1	2939700			7813	9573	6318	6328	8887	8887					0.01158295795335107
ELEEWQFAG	9	Unmodified	_ELEEWQFAG_					0	0	0			REV__ENSG00000164292|ENST00000379982|RHOBTB3	REV__ENSG00000164292|ENST00000379982|RHOBTB3	MULTI-SECPEP	OvCa9_classI_Rep2	2	554.3231201171875	2	554.750921	1107.48729	-0.49946	-0.00027708	-0.60628	-0.00033634	-1.1057	-0.00061341	555.2520533472234	50.626	0.59189	47.832	47.581	48.172	-2.794					19	11	2	0	0	0	0.027441	1	3305	3305		49.442	3.4896	1	15709	+		7814	20967	6319	6329	8888	8888					-0.06215430552992984
ELEFQQMLDR	10	Unmodified	_ELEFQQMLDR_					0	0	0		nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A	nc|ENSG00000169432|Q15858-4|SCN9A	nc|ENSG00000169432|Q15858-4|SCN9A	MULTI-SECPEP	OvCa9_classI_Rep2	2	436.2607421875	3	436.879939	1307.61799	-0.45155	-0.00019727	2.9455	0.0012868	2.494	0.0010896	436.881173818463	63.641	2.8431	60.896	60.427	63.27	-2.7444					115	54	3	0	0	0	0.026739	1	4887	4887		30.569	2.9249	1	516020			7815	7010	6320	6330	8889	8889					-0.02351782896471377
ELEFQQMLDR	10	Unmodified	_ELEFQQMLDR_					0	0	0		nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A	nc|ENSG00000169432|Q15858-4|SCN9A	nc|ENSG00000169432|Q15858-4|SCN9A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.26263427734375	3	436.879939	1307.61799	0.53922	0.00023558	1.9765	0.00086351	2.5158	0.0010991	436.8807106194929	64.484	1.8437	61.008	60.783	62.626	-3.476					88	37	3	0	0	0	0.026573	1	4657	4657		53.089	26.339	1	816980			7816	7010	6320	6330	8890	8890					-0.02351782896471377
ELEGDVEAL	9	Unmodified	_ELEGDVEAL_					0	0	0		ENST00000576826.1_1_16:3080666-3085497:-|nuORF;ENST00000572240.5_1_16:3080380-3081406:-|nuORF;ENSG00000162069|ENST00000572449|BICDL2	ENST00000576826.1_1_16:3080666-3085497:-|nuORF	ENST00000576826.1_1_16:3080666-3085497:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	487.7390441894531	2	487.73748	973.460406	1.4788	0.00072126	0.77333	0.00037718	2.2521	0.0010984	487.7377742075213	92.361	0.91879	92.361	92.092	93.011	0					33	21	3	0	0	0	0.27546	1	9990	9990		65.803	2.4969	1	1257700			7817	6155	6321	6331	8891	8891					-0.02738539164181475
ELEGKLSAQ	9	Unmodified	_ELEGKLSAQ_					0	0	0			REV__ENSG00000135968|ENST00000309863|GCC2	REV__ENSG00000135968|ENST00000309863|GCC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.7619323730469	2	487.761289	973.508025	0.41919	0.00020447	-0.60629	-0.00029572	-0.1871	-9.1259E-05	487.76076942504557	60.285	1.387	56.855	56.407	57.794	-3.43					63	27	4	0	0	0	0.1243	1	4084	4084		90.601	0.23104	1	604500	+		7818	19343	6322	6332	8892	8892					0.020211598266769215
ELEHYETEY	9	Unmodified	_ELEHYETEY_					0	0	0		tr|A0A7D6VQ74|A0A7D6VQ74_9CLOTFAD-bindingoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01545PE=3SV=1	tr|A0A7D6VQ74|A0A7D6VQ74_9CLOTFAD-bindingoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01545PE=3SV=1	tr|A0A7D6VQ74|A0A7D6VQ74_9CLOTFAD-bindingoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01545PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	607.2893676757812	2	606.756401	1211.49825	2.0314	0.0012326	0.99957	0.0006065	3.031	0.0018391	606.7570995631924	117.33	0.515	117.33	117.04	117.56	0					14	10	2	0	0	0	0.027462	1	13420	13420		23.042	17.485	1	107990			7819	34826	6323	6333	8893	8893					-0.09904072969357003
ELEIFFNN	8	Unmodified	_ELEIFFNN_					0	0	0		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.254638671875	2	513.250557	1024.48656	-0.58227	-0.00029885	-1.5149	-0.00077754	-2.0972	-0.0010764	513.7518498994059	87.15	1.5018	84.524	84.103	85.605	-2.6269					46	29	2	0	0	0	0.028476	1	7458	7458		11.511	0	1	101530			7820	1937	6324	6334	8894	8894					-0.024702252020460946
ELEIHLVVI	9	Unmodified	_ELEIHLVVI_					0	0	0		nc|ENSG00000186684|Q4G0S4-1|CYP27C1;ENSG00000186684|ENST00000664447|CYP27C1;nc|ENSG00000186684|Q4G0S4|CYP27C1	nc|ENSG00000186684|Q4G0S4-1|CYP27C1	nc|ENSG00000186684|Q4G0S4-1|CYP27C1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.7978515625	2	532.82115	1063.62775	-0.72357	-0.00038553	0.62757	0.00033438	-0.096001	-5.1152E-05	532.8211943974976	64.465	0.73112	60.99	60.735	61.466	-3.475					19	14	2	0	0	0	0.027456	1	4625	4625		30.504	0	1	36870			7821	8357	6325	6335	8895	8895					0.0984777317123644
ELEIKDKLL	9	Unmodified	_ELEIKDKLL_					0	0	0		nc|ENSG00000112874|Q9BQG2-2|NUDT12;ENSG00000112874|ENST00000230792|NUDT12	nc|ENSG00000112874|Q9BQG2-2|NUDT12	nc|ENSG00000112874|Q9BQG2-2|NUDT12	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.8069458007812	2	550.831714	1099.64888	-0.66317	-0.0003653	-3.8403	-0.0021154	-4.5035	-0.0024807	550.8283845049243	44.595	0.31056	44.595	44.484	44.795	0					10	6	2	0	0	0	0.027433	1	3016	3016		45.972	0	1	192430			7822	2934	6326	6336	8896	8896					0.10303738480092761
ELEILSESEES	11	Unmodified	_ELEILSESEES_					0	0	0		tr|A0A7D6VWR8|A0A7D6VWR8_9CLOTHomoserineO-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=metAPE=3SV=1	tr|A0A7D6VWR8|A0A7D6VWR8_9CLOTHomoserineO-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=metAPE=3SV=1	tr|A0A7D6VWR8|A0A7D6VWR8_9CLOTHomoserineO-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=metAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	631.8468627929688	2	632.79318	1263.57181	-0.14115	-8.9319E-05	2.3186	0.0014672	2.1775	0.0013779	632.7952331709821	64.377	0.54031	64.377	64.253	64.793	0					16	12	3	0	0	0	0.025257	1	5861	5861		44.377	7.9304	1	182760			7823	35258	6327	6337	8897	8897					-0.04943569317538277
ELEKIPIKC	9	Unmodified	_ELEKIPIKC_					0	0	0			REV__ENST00000523123.5_1_8:29647883-29648749:+|nuORF	REV__ENST00000523123.5_1_8:29647883-29648749:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	536.8085327148438	2	536.807185	1071.59982	0.23954	0.00012858	2.8518	0.0015308	3.0913	0.0016594	536.808594253858	65.887	1.3438	63.191	62.771	64.114	-2.6958					79	26	4	0	0	0	0.55588	1	5079	5079		37.159	0	1	1324500	+		7824	27089	6328	6338	8898	8898					0.06688126919493698
ELEKKKAKF	9	Unmodified	_ELEKKKAKF_					0	0	0			REV__ENSG00000044574|ENST00000324460|HSPA5	REV__ENSG00000044574|ENST00000324460|HSPA5	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.8079223632812	2	560.839874	1119.66519	3.1753	0.0017808	-0.44737	-0.0002509	2.7279	0.0015299	560.8388645459656	75.478	0.27096	75.478	75.33	75.601	0					12	6	3	0	0	0	0.027426	1	7507	7507		66.429	13.493	1	518800	+		7825	16650	6329	6339	8899	8899					0.11014864436833705
ELEKKKIL	8	Unmodified	_ELEKKKIL_					0	0	0		ENSG00000163874|ENST00000373087|ZC3H12A	ENSG00000163874|ENST00000373087|ZC3H12A	ENSG00000163874|ENST00000373087|ZC3H12A	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.7602844238281	2	500.823692	999.632832	-0.55265	-0.00027678	-1.8674	-0.00093524	-2.4201	-0.001212	500.8221913441345	65.427	0.35458	65.427	65.271	65.625	0					10	8	2	0	0	0	0.028476	1	6022	6022		47.916	15.961	1	92152			7826	6370	6330	6340	8900	8900					0.13300077033864
ELEKKLKEN	9	Unmodified	_ELEKKLKEN_					0	0	0		ENSG00000133983|ENST00000389912|COX16	ENSG00000133983|ENST00000389912|COX16	ENSG00000133983|ENST00000389912|COX16	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.322509765625	2	565.824421	1129.63429	1.266	0.00071632	2.7634	0.0015636	4.0294	0.0022799	565.8258693339985	60.117	1.6271	56.687	56.504	58.131	-3.43					44	32	2	0	0	0	0.025212	1	4057	4057		136.27	0	1	908160			7827	4247	6331	6341	8901	8901					0.0746566633195016
ELEKKLRLRQE	11	Unmodified	_ELEKKLRLRQE_					0	0	0		ENSG00000128908|ENST00000648947|INO80	ENSG00000128908|ENST00000648947|INO80	ENSG00000128908|ENST00000648947|INO80	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.2823486328125	3	481.287697	1440.84126	-6.5406	-0.0031479	-2.0333	-0.00097859	-8.5739	-0.0041265	481.28689914588375	161.43	3.2893	159.81	158.56	161.85	-1.6239					191	83	3	0	0	0	0.72516	1	16052	16052		13.508	1.0751	1	100850			7828	3911	6332	6342	8902	8902					0.13847453880134708
ELEKLPKSI	9	Unmodified	_ELEKLPKSI_					0	0	0			REV__tr|A0A7D6W103|A0A7D6W103_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01855PE=4SV=1	REV__tr|A0A7D6W103|A0A7D6W103_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01855PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.317626953125	2	528.818607	1055.62266	-1.2369	-0.0006541	0.74428	0.00039359	-0.49263	-0.00026051	528.8190862422002	101.39	1.3106	99.788	99.498	100.81	-1.6053					52	24	4	0	0	0	0.027316	1	7026	7026		112.11	18.964	1	252900	+		7829	31871	6333	6343	8903	8903					0.09707469308614236
ELEKLVYYL	9	Unmodified	_ELEKLVYYL_					0	0	0			REV__tr|A0A553SLC3|A0A553SLC3_NIACIAromaticacidexporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20385PE=4SV=1	REV__tr|A0A553SLC3|A0A553SLC3_NIACIAromaticacidexporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20385PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.2160034179688	2	585.326265	1168.63798	-0.072647	-4.2522E-05	-2.2097	-0.0012934	-2.2823	-0.0013359	585.3255632923477	64.788	0.24408	64.788	64.672	64.916	0					6	5	2	0	0	0	0.027456	1	5911	5911		38.806	0	1	89248	+		7830	30209	6334	6344	8904	8904					0.06040336105820643
ELEKMKELSL	10	Unmodified	_ELEKMKELSL_					0	0	0		ENSG00000214338|ENST00000525778|SOGA3	ENSG00000214338|ENST00000525778|SOGA3	ENSG00000214338|ENST00000525778|SOGA3	MULTI-MSMS	OvCa9_classI_Rep4_	4	407.222900390625	3	407.224935	1218.65297	1.1794	0.0004803	-3.0048	-0.0012236	-1.8253	-0.00074332	407.2235504868341	22.381	1.0975	21.043	20.574	21.672	-1.3386					64	25	3	0	0	0	0.6898	1	255	255		31.634	4.587	1	99247			7831	9171	6335	6345	8905	8905					0.05239459911513222
ELEKNSILLSQ	11	Unmodified	_ELEKNSILLSQ_					0	0	0			REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	MULTI-MSMS	OvCa99_classI_Rep5	1	638.3588256835938	2	637.353542	1272.69253	2.8329	0.0018055	1	0.00063738	3.8329	0.0024429	637.3541639072878	116.11	1.4625	116.11	115.44	116.91	0					86	31	4	0	0	0	0.62561	1	13235	13235		42.338	9.5257	1	1595200	+		7832	19085	6336	6346	8906	8906					0.06709303186585203
ELEKRDILNM	10	Unmodified	_ELEKRDILNM_					0	0	0			REV__ENSG00000120162|ENST00000262244|MOB3B	REV__ENSG00000120162|ENST00000262244|MOB3B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	421.24310302734375	3	420.892067	1259.65437	-2.2266	-0.00093718	2.1255	0.00089462	-0.10112	-4.2559E-05	420.8929605190359	49.126	1.1423	45.984	45.468	46.61	-3.1416					23	18	2	0	0	0	0.027033	1	2765	2765		27.047	0.98393	1	41870	+		7833	18488	6337	6347	8907	8907					0.03493094000259589
ELEKRKRV	8	Unmodified	_ELEKRKRV_					0	0	0			REV__nc|ENSG00000102606|Q14155|ARHGEF7	REV__nc|ENSG00000102606|Q14155|ARHGEF7	MULTI-SECPEP	OvCa9_classI_Rep2	2	530.2928466796875	2	529.327465	1056.64038	-0.47214	-0.00024992	-3.4139	-0.0018071	-3.886	-0.002057	529.3255098960011	110.02	1.1378	109.85	109.56	110.7	-0.17237					48	22	3	0	0	0	0.028476	1	10320	10320		35.618	11.416	1	79390	+		7834	28775	6338	6348	8908	8908					0.11432229354136325
ELELEIDLDP	10	Unmodified	_ELELEIDLDP_					0	0	0			REV__ENSG00000101842|ENST00000217957|VSIG1	REV__ENSG00000101842|ENST00000217957|VSIG1	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.2523193359375	2	593.297901	1184.58125	2.0934	0.001242	-2.6055	-0.0015458	-0.51206	-0.0003038	593.7992877339634	117.66	0.4196	117.66	117.51	117.93	0					11	8	2	0	0	0	0.02661	1	13473	13473		49.442	3.4693	1	37619	+		7835	17520	6339	6349	8909	8909					-0.0036575624135366525
ELELHKENLN	10	Unmodified	_ELELHKENLN_					0	0	0		ENSG00000188738|ENST00000424728|FSIP2;nc|ENSG00000188738|Q5CZC0-2|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	OvCa99_classI_Rep5	1	619.8226318359375	2	619.822409	1237.63027	0.24111	0.00014944	-1.1616	-0.00071999	-0.9205	-0.00057054	619.8215743207109	161.51	1.1116	161.51	160.81	161.92	0					67	21	4	0	0	0	0.52439	1	18938	18938		51.193	0	1	299740			7836	8495	6340	6350	8910	8910					0.020955768382464157
ELELNRRRFF	10	Unmodified	_ELELNRRRFF_					0	0	0			REV__nc|ENSG00000009790|Q9Y228-3|TRAF3IP3	REV__nc|ENSG00000009790|Q9Y228-3|TRAF3IP3	MULTI-MSMS	OvCa99_classI_Rep5	1	460.5924377441406	3	460.589599	1378.74697	-0.29257	-0.00013475	2.5694	0.0011834	2.2769	0.0010487	460.5907513486629	104.77	1.6907	104.77	104.36	106.05	0					99	38	5	0	0	0	0.64812	1	11736	11736		36.318	3.2782	1	6280900	+		7837	16469	6341	6351	8911	8911					0.07274359848634049
ELELVKVR	8	Unmodified	_ELELVKVR_					0	0	0			REV__ENST00000467897.2_1_7:27168846-27192162:-|nuORF	REV__ENST00000467897.2_1_7:27168846-27192162:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.2491149902344	2	493.305667	984.596781	-0.30605	-0.00015097	-0.55935	-0.00027593	-0.8654	-0.0004269	493.3052145835547	95.908	2.013	93.483	93.005	95.018	-2.4256					53	39	3	0	0	0	0.028476	1	8592	8592		44.117	1.7207	1	61324	+		7838	26213	6342	6352	8912	8912					0.10386619857001733
ELELVKVR	8	Unmodified	_ELELVKVR_					0	0	0			REV__ENST00000467897.2_1_7:27168846-27192162:-|nuORF	REV__ENST00000467897.2_1_7:27168846-27192162:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	493.305667	984.596781	0.050295	2.4811E-05	-1.2333	-0.0006084	-1.183	-0.00058359	493.3048039428855	94.561	1.2307	93.462	93.263	94.494	-1.0995	0.0035939	-0.00044386	NaN	44.117	38	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43809	+		7839	26213	6342	6352							0.10386619857001733
ELELVKVR	8	Unmodified	_ELELVKVR_					0	0	0			REV__ENST00000467897.2_1_7:27168846-27192162:-|nuORF	REV__ENST00000467897.2_1_7:27168846-27192162:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	493.305667	984.596781	-0.86595	-0.00042718	-0.66734	-0.0003292	-1.5333	-0.00075638	493.30509682282127	95.326	0.55246	93.43	93.261	93.813	-1.8956	-0.028107	0.00011453	NaN	44.117	27	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59332	+		7840	26213	6342	6352							0.10386619857001733
ELENASLVF	9	Unmodified	_ELENASLVF_					0	0	0		ENSG00000103528|ENST00000355377|SYT17	ENSG00000103528|ENST00000355377|SYT17	ENSG00000103528|ENST00000355377|SYT17	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.7798156738281	2	511.263665	1020.51278	1.6053	0.00082073	-0.9584	-0.00049	0.64689	0.00033073	511.2628311809909	130.27	0.28391	130.27	130.1	130.39	0					9	5	2	0	0	0	0.027447	1	15112	15112		47.657	27.661	1	38719			7841	2325	6343	6353	8913	8913					0.003340439694284214
ELEPELMPP	9	Unmodified	_ELEPELMPP_					0	0	0			REV__ENST00000298251.4_1_11:124806133-124806265:-|nuORF	REV__ENST00000298251.4_1_11:124806133-124806265:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.3179321289062	2	527.759901	1053.50525	-0.9677	-0.00051071	4.3	0.0022693	3.3323	0.0017586	527.7608715541365	103.08	0.47	100.88	100.67	101.14	-2.1994					12	8	2	0	0	0	0.027456	1	9294	9294		38.806	7.2763	1	12005	+		7842	24213	6344	6354	8914	8914					-0.01936431622470991
ELEPHESLL	9	Unmodified	_ELEPHESLL_					0	0	0			REV__ITM2B-RB1|2|fusion	REV__ITM2B-RB1|2|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.7978515625	2	533.774396	1065.53424	-0.62906	-0.00033578	1.8668	0.00099647	1.2378	0.00066069	533.7752524276258	64.793	0.24411	61.308	61.163	61.407	-3.4854					6	4	2	0	0	0	0.027462	1	4625	4625		16.473	0	1	65399	+		7843	19628	6345	6355	8915	8915					0.004094289981594557
ELEQLEGPQ	9	Unmodified	_ELEQLEGPQ_					0	0	0			REV__ENSG00000116032|ENST00000234389|GRIN3B	REV__ENSG00000116032|ENST00000234389|GRIN3B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.3104858398438	2	521.756204	1041.49785	-1.1659	-0.00060834	3.245	0.0016931	2.0791	0.0010848	521.7569998560589	53.331	1.0538	50.123	49.502	50.556	-3.208					29	20	2	0	0	0	0.027426	1	3296	3296		66.429	0	1	55735	+		7844	18282	6346	6356	8916	8916					-0.021234478985661553
ELEQNTLIP	9	Unmodified	_ELEQNTLIP_					0	0	0			REV__tr|A0A553SGZ2|A0A553SGZ2_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11845PE=4SV=1	REV__tr|A0A553SGZ2|A0A553SGZ2_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11845PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.317626953125	2	528.782222	1055.54989	-1.0823	-0.00057231	0.38063	0.00020127	-0.7017	-0.00037104	528.7826232907341	101.78	0.785	100.26	100.06	100.84	-1.5211					21	14	2	0	0	0	0.027181	1	7026	7026		118.74	8.6232	1	30457	+		7845	29754	6347	6357	8917	8917					0.024337155151897605
ELEQQIAE	8	Unmodified	_ELEQQIAE_					0	0	0		ENSG00000167880|ENST00000301607|EVPL;ENST00000587569.5_1_17:74014525-74023279:-|nuORF	ENSG00000167880|ENST00000301607|EVPL	ENSG00000167880|ENST00000301607|EVPL	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.2890319824219	2	480.237647	958.460741	0.48955	0.0002351	3.8298	0.0018392	4.3194	0.0020743	480.239487637142	42.86	0.8413	40.151	39.966	40.808	-2.7097					26	16	2	0	0	0	0.028476	1	2382	2382		29.15	0	1	39954			7846	6845	6348	6358	8918	8918					-0.020151194443315035
ELEQQKVWN	9	Unmodified	_ELEQQKVWN_					0	0	0		nc|ENSG00000214787|Q96PG1-2|MS4A4E;nc|ENSG00000214787|Q96PG1|MS4A4E	nc|ENSG00000214787|Q96PG1-2|MS4A4E	nc|ENSG00000214787|Q96PG1-2|MS4A4E	MULTI-SECPEP	OvCa9_classI_Rep4_	4	586.814697265625	2	587.29857	1172.58259	-1.4296	-0.00083959	-2.4786	-0.0014557	-3.9082	-0.0022953	587.297127174063	44.932	0.71461	41.894	41.464	42.178	-3.0385					17	13	2	0	0	0	0.027462	1	2249	2249		15.642	0	1	36999			7847	15312	6349	6359	8919	8919					0.0031992263807296695
ELEQSDKELY	10	Unmodified	_ELEQSDKELY_					0	0	0			REV__nc|ENSG00000161010|Q6NTE8-3|MRNIP	REV__nc|ENSG00000161010|Q6NTE8-3|MRNIP	MULTI-SECPEP	OvCa99_classI_Rep5	1	418.21368408203125	3	418.534714	1252.58231	-0.2481	-0.00010384	1.4601	0.0006111	1.212	0.00050726	418.8698266320382	25.829	0.29974	25.829	25.643	25.943	0					11	5	3	0	0	0	0.027193	1	625	625		29.17	7.4843	1	10612	+		7848	20686	6350	6360	8920	8920					-0.03387541872461952
ELEQVPKKI	9	Unmodified	_ELEQVPKKI_					0	0	0			REV__ENST00000515251.1_1_4:120376278-120381900:+|nuORF	REV__ENST00000515251.1_1_4:120376278-120381900:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.856689453125	2	542.324057	1082.63356	-0.43976	-0.00023849	1.4618	0.00079275	1.022	0.00055426	542.8267199277208	48.478	0.25863	48.478	48.372	48.63	0					8	5	2	0	0	0	0.027017	1	3570	3570		104.75	11.551	1	104430	+		7849	26995	6351	6361	8921	8921					0.0955487168291711
ELERLEKEHRR	11	Unmodified	_ELERLEKEHRR_					0	0	0			REV__PLCB2|p.R1022Nfs*56|1|0.09|ENSG00000137841|chr15:40290811-40290812|-/ATTT|frameshift_variant	REV__PLCB2|p.R1022Nfs*56|1|0.09|ENSG00000137841|chr15:40290811-40290812|-/ATTT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.9448547363281	3	498.942701	1493.80627	-1.0023	-0.00050008	2.1023	0.0010489	1.1	0.00054883	498.9437780016878	81.177	4.5443	78.467	78.101	82.645	-2.7106					241	93	6	0	0	0	0.69015	1	6704	6704		33.039	7.1477	1	6586900	+		7850	19487	6352	6362	8922	8922					0.07912211072175523
ELERLKSQILE	11	Unmodified	_ELERLKSQILE_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1;GOLGB1|p.R1008Efs*9|1|0.15|ENSG00000173230|chr3:121697486-121697486|T/-|frameshift_variant	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	OvCa99_classI_Rep5	1	453.2622985839844	3	453.261036	1356.76128	1.88	0.00085211	1.1746	0.00053242	3.0546	0.0013845	453.2614702331116	78.837	0.69997	78.837	78.54	79.24	0					38	16	3	0	0	0	0.70315	1	8012	8012		28.577	0	1	2188100			7851	7361	6353	6363	8923	8923					0.0971696748629256
ELERLMVTML	10	Unmodified	_ELERLMVTML_					0	0	0		nc|ENSG00000177380|O75145-2|PPFIA3;ENSG00000177380|ENST00000334186|PPFIA3	nc|ENSG00000177380|O75145-2|PPFIA3	nc|ENSG00000177380|O75145-2|PPFIA3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	412.2201232910156	3	412.222648	1233.64612	0.56393	0.00023247	0.29302	0.00012079	0.85695	0.00035326	412.2227618298016	59.152	0.74553	55.76	55.502	56.248	-3.392					18	14	2	0	0	0	0.026994	1	3980	3980		30.569	11.465	1	82365			7852	7674	6354	6364	8924	8924					0.03863823759274965
ELERLMVTML	10	Unmodified	_ELERLMVTML_					0	0	0		nc|ENSG00000177380|O75145-2|PPFIA3;ENSG00000177380|ENST00000334186|PPFIA3	nc|ENSG00000177380|O75145-2|PPFIA3	nc|ENSG00000177380|O75145-2|PPFIA3	MULTI-MATCH	OvCa9_classI_Rep2	2		3	412.222648	1233.64612	0.38427	0.00015841	0.13946	5.7488E-05	0.52373	0.00021589	412.22270180920697	58.353	0.75188	55.573	55.235	55.986	-2.7801	-0.093833	-0.00010041	NaN	24.232	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32105			7853	7674	6354	6364							0.03863823759274965
ELERMRIDRAE	11	Unmodified	_ELERMRIDRAE_					0	0	0			REV__nc|ENSG00000093167|Q9Y608-2|LRRFIP2	REV__nc|ENSG00000093167|Q9Y608-2|LRRFIP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.7617492675781	3	473.245392	1416.71435	-0.30361	-0.00014368	-2.2912	-0.0010843	-2.5948	-0.001228	473.2442649769802	65.95	1.1699	62.464	62.13	63.3	-3.4854					54	23	3	0	0	0	0.026145	1	4760	4760		23.378	4.8469	1	355000	+		7854	28759	6355	6365	8925	8925					0.022657846634956513
ELERMRIDRAE	11	Unmodified	_ELERMRIDRAE_					0	0	0			REV__nc|ENSG00000093167|Q9Y608-2|LRRFIP2	REV__nc|ENSG00000093167|Q9Y608-2|LRRFIP2	MULTI-MATCH	OvCa9_classI_Rep2	2		3	473.245392	1416.71435	0.48447	0.00022927	-2.9559	-0.0013989	-2.4715	-0.0011696	473.24389382524544	65.171	1.327	62.447	61.864	63.191	-2.7245	-0.0087004	-0.00019175	NaN	27.644	60	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162610	+		7855	28759	6355	6365							0.022657846634956513
ELERVNRVN	9	Unmodified	_ELERVNRVN_					0	0	0		ENST00000525247.1_1_11:86130859-86133754:+|nuORF;ENST00000531587.5_1_11:86126125-86133754:+|nuORF;nc|ENSG00000149201|Q6ZN84-3|CCDC81;nc|ENSG00000149201|Q6ZN84-2|CCDC81;ENSG00000149201|ENST00000445632|CCDC81	ENST00000525247.1_1_11:86130859-86133754:+|nuORF	ENST00000525247.1_1_11:86130859-86133754:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	564.8101806640625	2	564.809636	1127.60472	-2.1858	-0.0012346	3.688	0.002083	1.5023	0.00084849	564.8115908604212	146.02	1.2908	145.8	145.33	146.62	-0.22697					59	25	3	0	0	0	0.63422	1	14759	14759		27.882	0	1	117310			7856	5445	6356	6366	8926	8926					0.046021471064932484
ELESARPQL	9	Unmodified	_ELESARPQL_					0	0	0		nc|ENSG00000187634|Q96NU1-6|SAMD11;nc|ENSG00000187634|Q96NU1-4|SAMD11;nc|ENSG00000187634|Q96NU1|SAMD11;nc|ENSG00000187634|Q96NU1-5|SAMD11;ENSG00000187634|ENST00000616016|SAMD11;nc|ENSG00000187634|Q96NU1-1|SAMD11;nc|ENSG00000187634|Q96NU1-2|SAMD11	nc|ENSG00000187634|Q96NU1-6|SAMD11	nc|ENSG00000187634|Q96NU1-6|SAMD11	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.3092041015625	2	521.780013	1041.54547	0.90014	0.00046968	-3.7151	-0.0019385	-2.815	-0.0014688	521.7775724776627	103.2	0.53712	103.2	102.85	103.39	0					19	12	2	0	0	0	0.027432	1	11538	11538		49.536	0.094497	1	194500			7857	8421	6357	6367	8927	8927					0.026362510922808724
ELESEEEVKL	10	Unmodified	_ELESEEEVKL_					0	0	0		ENSG00000126945|ENST00000316594|HNRNPH2	ENSG00000126945|ENST00000316594|HNRNPH2	ENSG00000126945|ENST00000316594|HNRNPH2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	402.22021484375	3	402.202964	1203.58706	1.8679	0.00075129	1.8604	0.00074825	3.7283	0.0014995	402.20365918184075	68.919	1.1751	65.429	65.113	66.288	-3.4902					34	23	2	0	0	0	0.026653	1	5237	5237		41.427	6.2484	1	66280			7858	3812	6358	6368	8928	8928					-0.00658657729695733
ELESEEEVKL	10	Unmodified	_ELESEEEVKL_					0	0	0		ENSG00000126945|ENST00000316594|HNRNPH2	ENSG00000126945|ENST00000316594|HNRNPH2	ENSG00000126945|ENST00000316594|HNRNPH2	MULTI-MATCH	OvCa9_classI_Rep2	2		3	402.202964	1203.58706	0.40101	0.00016129	3.7356	0.0015025	4.1367	0.0016638	402.20447324457626	67.953	0.9858	65.292	64.842	65.828	-2.661	-0.068437	0.00084213	NaN	41.427	43	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38813			7859	3812	6358	6368							-0.00658657729695733
ELESKILLF	9	Unmodified	_ELESKILLF_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	OvCa99_classI_Rep5	1	546.3214111328125	2	546.320983	1090.62741	0.51802	0.00028301	1.9895	0.0010869	2.5075	0.0013699	546.3219347616409	141.28	0.90393	141.28	140.98	141.88	0					49	17	4	0	0	0	0.44568	1	16486	16486		47.657	1.7054	1	539320	+		7860	22662	6359	6369	8929	8929					0.08572353451381787
ELETALYY	8	Unmodified	_ELETALYY_					0	0	0		nc|ENSG00000174450|Q8N9W4-2|GOLGA6L2;nc|ENSG00000174450|Q8N9W4-1|GOLGA6L2;ENSG00000174450|ENST00000567107|GOLGA6L2	nc|ENSG00000174450|Q8N9W4-2|GOLGA6L2	nc|ENSG00000174450|Q8N9W4-2|GOLGA6L2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.2853698730469	2	501.244941	1000.47533	-1.1527	-0.0005778	3.6842	0.0018467	2.5315	0.0012689	501.2468619738536	82.116	0.67724	79.433	79.204	79.881	-2.6829					18	13	2	0	0	0	0.028476	1	6751	6751		42.474	21.993	1	29062			7861	7467	6360	6370	8930	8930					-0.024890472961942578
ELETKMNNI	9	Unmodified	_ELETKMNNI_					0	0	0			REV__ENSG00000140575|ENST00000268182|IQGAP1	REV__ENSG00000140575|ENST00000268182|IQGAP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	546.6293334960938	2	546.273706	1090.53286	1.1053	0.00060377	-4.2715	-0.0023334	-3.1663	-0.0017297	546.2713114869733	87.305	1.2847	85.874	85.491	86.775	-1.4311					41	25	3	0	0	0	0.027433	1	7603	7603		54.776	0	1	22347	+		7862	19688	6361	6371	8931	8931					-0.008785283622728457
ELETNQKEV	9	Unmodified	_ELETNQKEV_					0	0	0		nc|ENSG00000175356|Q9NQ36-2|SCUBE2;nc|ENSG00000175356|Q9NQ36|SCUBE2;ENSG00000175356|ENST00000649792|SCUBE2	nc|ENSG00000175356|Q9NQ36-2|SCUBE2	nc|ENSG00000175356|Q9NQ36-2|SCUBE2	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.26708984375	2	545.274761	1088.53497	1.2966	0.00070701	1.2008	0.00065475	2.4974	0.0013618	545.2754507406441	147.03	0.78777	147.03	146.62	147.41	0					27	15	2	0	0	0	0.027459	1	17211	17211		36.447	10.873	1	107030			7863	7539	6362	6372	8932	8932					-0.005757763527981297
ELEVILKLL	9	Unmodified	_ELEVILKLL_					0	0	0			REV__nc|ENSG00000179046|Q8N7C3-2|TRIML2	REV__nc|ENSG00000179046|Q8N7C3-2|TRIML2	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.346435546875	2	535.347	1068.67945	-1.9761	-0.0010579	-0.67346	-0.00036054	-2.6496	-0.0014184	535.3465415939195	44.02	0.9518	41.013	40.793	41.745	-3.0074					47	18	3	0	0	0	0.56889	1	2156	2156		35.618	0	1	384910	+		7864	22096	6363	6373	8933	8933					0.1478551686514038
ELEVQCPPGV	10	Unmodified	_ELEVQCPPGV_					0	0	0		ENSG00000114698|ENST00000354952|PLSCR4	ENSG00000114698|ENST00000354952|PLSCR4	ENSG00000114698|ENST00000354952|PLSCR4	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2935180664062	2	535.762975	1069.5114	2.0274	0.0010862	-0.021376	-1.1452E-05	2.006	0.0010747	535.7627578909161	78.309	1.1973	78.309	77.672	78.869	0					51	28	2	0	0	0	0.026493	1	7849	7849		54.776	0	1	454400			7865	3034	6364	6374	8934	8934					-0.020579133909905067
ELEWNLQL	8	Unmodified	_ELEWNLQL_					0	0	0			REV__ENST00000413432.2_1_2:242382773-242383022:+|nuORF	REV__ENST00000413432.2_1_2:242382773-242383022:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.3379516601562	2	522.771657	1043.52876	0.24459	0.00012787	-1.8231	-0.00095307	-1.5785	-0.0008252	522.7695674556832	141.43	0.55092	141.43	141.18	141.74	0					31	10	4	0	0	0	0.028476	1	16533	16533		51.335	18.523	1	57130	+		7866	25513	6365	6375	8935	8935					0.008737502063468128
ELEWVSKEL	9	Unmodified	_ELEWVSKEL_					0	0	0			REV__RFX7|p.Q1124Nfs*5|1|0.19|ENSG00000181827|chr15:56094059-56094068|GCTTCTTTGA/-|frameshift_variant	REV__RFX7|p.Q1124Nfs*5|1|0.19|ENSG00000181827|chr15:56094059-56094068|GCTTCTTTGA/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	566.7996826171875	2	566.797872	1131.58119	1.9352	0.0010968	-3.2728	-0.001855	-1.3376	-0.00075815	566.7958458233863	78.794	0.66145	78.794	78.335	78.996	0					37	15	4	0	0	0	0.074342	1	8005	8005		104.75	5.3716	1	3019000	+		7867	22251	6366	6376	8936	8936					0.02066288549303863
ELEWVSKEL	9	Unmodified	_ELEWVSKEL_					0	0	0			REV__RFX7|p.Q1124Nfs*5|1|0.19|ENSG00000181827|chr15:56094059-56094068|GCTTCTTTGA/-|frameshift_variant	REV__RFX7|p.Q1124Nfs*5|1|0.19|ENSG00000181827|chr15:56094059-56094068|GCTTCTTTGA/-|frameshift_variant	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	566.797872	1131.58119	1.9352	0.0010968	-3.2728	-0.001855	-1.3376	-0.00075815	566.7958458233863	78.794	0.66145	78.794	78.335	78.996	0	0	0	NaN	104.75	37	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3019000	+		7868	22251	6366	6376							0.02066288549303863
ELFADKFPK	9	Unmodified	_ELFADKFPK_					0	0	0		ENST00000567559.1_1_16:77926320-77926647:+|nuORF;ENST00000462517.1_1_3:57927592-57927931:+|nuORF;ENST00000441944.2_1_9:7597894-7598236:+|nuORF;ENST00000583752.1_1_17:38524217-38524595:+|nuORF	ENST00000567559.1_1_16:77926320-77926647:+|nuORF	ENST00000567559.1_1_16:77926320-77926647:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.3433227539062	2	547.797675	1093.5808	0.62336	0.00034147	1.1566	0.00063357	1.7799	0.00097505	547.7987707586166	151.74	0.47107	151.74	151.5	151.97	0					21	9	3	0	0	0	0.027462	1	17780	17780		31.53	0	1	67115			7869	11934	6367	6377	8937	8937					0.03774913620077314
ELFAIGVKNA	10	Unmodified	_ELFAIGVKNA_					0	0	0		ENST00000432943.6_1_8:121160081-121289735:+|nuORF;nc|ENSG00000187955|Q05707-2|COL14A1;ENSG00000187955|ENST00000297848|COL14A1	ENST00000432943.6_1_8:121160081-121289735:+|nuORF	ENST00000432943.6_1_8:121160081-121289735:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.2758178710938	2	531.303124	1060.5917	2.5622	0.0013613	-2.6546	-0.0014104	-0.09233	-4.9055E-05	531.3002798796512	96.078	0.46936	96.078	95.869	96.338	0					15	10	3	0	0	0	0.027021	1	10504	10504		15.642	0	1	124270			7870	8443	6368	6378	8938	8938					0.06382315994392229
ELFDVEQMK	9	Unmodified	_ELFDVEQMK_					0	0	0			REV__ENSG00000122482|ENST00000337393|ZNF644	REV__ENSG00000122482|ENST00000337393|ZNF644	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.7578125	2	569.776082	1137.53761	-0.26293	-0.00014981	-4.0905	-0.0023306	-4.3534	-0.0024805	569.7740184620608	61.171	0.43127	61.171	60.984	61.416	0					21	9	3	0	0	0	0.027462	1	5359	5359		32.812	3.6629	1	410060	+		7871	18599	6369	6379	8939	8939					-0.025656442194986084
ELFFKLARDI	10	Unmodified	_ELFFKLARDI_					0	0	0			REV__nc|ENSG00000161681|Q9Y566-3|SHANK1	REV__nc|ENSG00000161681|Q9Y566-3|SHANK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	418.8860168457031	3	417.908046	1250.70231	0.032226	1.3468E-05	-3.2636	-0.0013639	-3.2314	-0.0013504	417.90668495112317	54.93	0.3886	54.93	54.718	55.107	0					14	8	3	0	0	0	0.026843	1	4457	4457		25.126	0	1	283340	+		7872	20703	6370	6380	8940	8940					0.08698535982603062
ELFGLPGDPK	10	Unmodified	_ELFGLPGDPK_					0	0	0		nc|ENSG00000137841|Q00722-3|PLCB2;nc|ENSG00000137841|Q00722-2|PLCB2;ENSG00000137841|ENST00000260402|PLCB2;PLCB2|p.R766Pfs*8|1|0.09|ENSG00000137841|chr15:40292955-40292955|C/-|frameshift_variant;ENST00000558588.5_1_15:40583969-40599873:-|nuORF;PLCB2|p.R1022Nfs*56|1|0.09|ENSG00000137841|chr15:40290811-40290812|-/ATTT|frameshift_variant;PLCB2|p.A1021Efs*60|1|0.07|ENSG00000137841|chr15:40290812-40290813|-/TAGAGGCCCCTTT|frameshift_variant	nc|ENSG00000137841|Q00722-3|PLCB2	nc|ENSG00000137841|Q00722-3|PLCB2	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.7640991210938	2	536.787307	1071.56006	-0.18963	-0.00010179	-3.1139	-0.0016715	-3.3036	-0.0017733	536.7857296205202	71.354	0.60043	71.354	71.068	71.668	0					25	14	2	0	0	0	0.026659	1	6853	6853		37.812	0	1	490130			7873	4629	6371	6381	8941	8941					0.027143232404114315
ELFGPDRAIIP	11	Unmodified	_ELFGPDRAIIP_					0	0	0		ENSG00000203907|ENST00000370359|OOEP	ENSG00000203907|ENST00000370359|OOEP	ENSG00000203907|ENST00000370359|OOEP	MULTI-SECPEP	OvCa99_classI_Rep5	1	614.358642578125	2	614.340238	1226.66592	1.309	0.00080417	1.8671	0.0011471	3.1761	0.0019512	614.3407402996952	144.13	0.1492	144.13	144.06	144.21	0					4	2	2	0	0	0	0.025496	1	16852	16852		19.104	6.2918	1	10021			7874	8939	6372	6382	8942	8942					0.061656590859229254
ELFGVFLVLL	10	Unmodified	_ELFGVFLVLL_					0	0	0		ENST00000381645.7_1_22:38756869-38776397:-|nuORF	ENST00000381645.7_1_22:38756869-38776397:-|nuORF	ENST00000381645.7_1_22:38756869-38776397:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	575.3446044921875	2	575.349543	1148.68453	-6.2917	-0.0036199	-0.91883	-0.00052865	-7.2105	-0.0041486	575.3489585356984	154.97	1.0558	153.9	153.56	154.61	-1.073					68	25	4	0	0	0	0.76627	1	13362	13362		23.042	0	1	137860			7875	11170	6373	6383	8943	8943					0.11613820727757229
ELFHTMQIL	9	Unmodified	_ELFHTMQIL_					0	0	0			REV__nc|ENSG00000162897|Q8WWV6|FCAMR	REV__nc|ENSG00000162897|Q8WWV6|FCAMR	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.3002319335938	2	566.296985	1130.57942	0.65693	0.00037202	-1.3872	-0.00078557	-0.73027	-0.00041355	566.2962153602747	102.09	1.5172	99.889	99.471	100.99	-2.1994					58	28	3	0	0	0	0.24951	1	9215	9215		68.787	0	1	297420	+		7876	20790	6374	6384	8944	8944					0.019349562596971737
ELFIFLWI	8	Unmodified	_ELFIFLWI_					0	0	0		ENST00000556551.2_1_14:74325599-74340738:+|nuORF	ENST00000556551.2_1_14:74325599-74340738:+|nuORF	ENST00000556551.2_1_14:74325599-74340738:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.7847290039062	2	540.810054	1079.60555	-0.10939	-5.9161E-05	-2.5181	-0.0013618	-2.6275	-0.001421	540.808689018684	69.151	0.82938	69.151	68.398	69.228	0					32	19	2	0	0	0	0.028476	1	6551	6551		14.664	7.9286	1	276820			7877	13663	6375	6385	8945	8945					0.06893593493464323
ELFIFLWI	8	Unmodified	_ELFIFLWI_					0	0	0		ENST00000556551.2_1_14:74325599-74340738:+|nuORF	ENST00000556551.2_1_14:74325599-74340738:+|nuORF	ENST00000556551.2_1_14:74325599-74340738:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	540.810054	1079.60555	-0.3616	-0.00019556	3.3326	0.0018023	2.971	0.0016067	540.8116875774297	71.966	1.3539	69.459	69.226	70.58	-2.5071	0.090184	0.0011548	NaN	28.254	43	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75282			7878	13663	6375	6385							0.06893593493464323
ELFIFLWI	8	Unmodified	_ELFIFLWI_					0	0	0		ENST00000556551.2_1_14:74325599-74340738:+|nuORF	ENST00000556551.2_1_14:74325599-74340738:+|nuORF	ENST00000556551.2_1_14:74325599-74340738:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	540.810054	1079.60555	0.79081	0.00042768	2.0841	0.0011271	2.8749	0.0015548	540.8111038114653	72.099	1.5304	69.496	69.18	70.71	-2.6023	0.12783	-0.00019561	NaN	28.254	39	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107560			7879	13663	6375	6385							0.06893593493464323
ELFILLPQ	8	Unmodified	_ELFILLPQ_					0	0	0			REV__ENST00000482704.1_1_2:96692435-96692645:-|nuORF	REV__ENST00000482704.1_1_2:96692435-96692645:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.7786560058594	2	486.791861	971.569169	1.579	0.00076863	2.9088	0.001416	4.4878	0.0021846	486.79327302901083	90.866	0.56435	89.63	89.39	89.954	-1.2355					18	10	2	0	0	0	0.028476	1	8019	8019		31.955	13.63	1	15304	+		7880	22571	6376	6386	8946	8946					0.08224716596760118
ELFKEGSR	8	Unmodified	_ELFKEGSR_					0	0	0		tr|A0A553SFA5|A0A553SFA5_NIACIArabinogalactanendo-beta-1,4-galactanaseOS=NialliacirculansOX=1397GN=CEQ21_08370PE=3SV=1	tr|A0A553SFA5|A0A553SFA5_NIACIArabinogalactanendo-beta-1,4-galactanaseOS=NialliacirculansOX=1397GN=CEQ21_08370PE=3SV=1	tr|A0A553SFA5|A0A553SFA5_NIACIArabinogalactanendo-beta-1,4-galactanaseOS=NialliacirculansOX=1397GN=CEQ21_08370PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.2806091308594	2	483.256174	964.497795	2.9131	0.0014078	0.40107	0.00019382	3.3141	0.0016016	483.2582785973122	90.073	0.50558	90.073	89.681	90.186	0					13	11	2	0	0	0	0.028476	1	9643	9643		35.618	5.1146	1	141090			7881	33014	6377	6387	8947	8947					0.014125968921121057
ELFKIGYDIAL	11	Unmodified	_ELFKIGYDIAL_					0	0	0			REV__ENST00000558119.5_1_15:63537012-63555815:+|nuORF	REV__ENST00000558119.5_1_15:63537012-63555815:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	427.91021728515625	3	427.907823	1280.70164	1.306	0.00055883	1.9529	0.00083568	3.2589	0.0013945	427.90865161347017	37.38	1.3943	34.488	34.142	35.536	-2.8925					83	27	4	0	0	0	0.70587	1	1389	1389		27.644	0.59661	1	494530	+		7882	21159	6378	6388	8948	8948					0.07251696542925856
ELFKKGAKVI	10	Unmodified	_ELFKKGAKVI_					0	0	0		tr|A0A7D6VTP1|A0A7D6VTP1_9CLOTRibonucleaseJOS=ClostridiumintestinaleOX=36845GN=rnjPE=3SV=1	tr|A0A7D6VTP1|A0A7D6VTP1_9CLOTRibonucleaseJOS=ClostridiumintestinaleOX=36845GN=rnjPE=3SV=1	tr|A0A7D6VTP1|A0A7D6VTP1_9CLOTRibonucleaseJOS=ClostridiumintestinaleOX=36845GN=rnjPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	566.8606567382812	2	566.858067	1131.70158	2.2699	0.0012867	-0.21315	-0.00012083	2.0568	0.0011659	566.8578328459593	99.917	2.1227	99.917	99.612	101.73	0					117	50	5	0	0	0	0.47142	2	11051	11051;11081		58.23	3.5761	1	19208000			7883	35130	6379	6389	8949;8950	8949					0.14099741333575366
ELFKKSSL	8	Unmodified	_ELFKKSSL_					0	0	0			REV__ENSG00000138246|ENST00000260818|DNAJC13	REV__ENSG00000138246|ENST00000260818|DNAJC13	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.752197265625	2	476.279118	950.543683	2.1806	0.0010386	0.20229	9.6347E-05	2.3829	0.0011349	476.27910713561425	100.31	0.38171	100.31	100.11	100.49	0					21	8	3	0	0	0	0.028476	1	11129	11129		21.96	0	1	973920	+		7884	19523	6380	6390	8951	8951					0.06643242074335376
ELFKLSEKV	9	Unmodified	_ELFKLSEKV_					0	0	0			REV__tr|A0A7D6VS02|A0A7D6VS02_9CLOTPyruvateformate-lyase-activatingenzymeOS=ClostridiumintestinaleOX=36845GN=pflAPE=3SV=1	REV__tr|A0A7D6VS02|A0A7D6VS02_9CLOTPyruvateformate-lyase-activatingenzymeOS=ClostridiumintestinaleOX=36845GN=pflAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.7896728515625	2	546.818607	1091.62266	-0.75806	-0.00041452	0.19878	0.0001087	-0.55927	-0.00030582	547.3196843515042	68.254	0.44421	68.254	68.037	68.481	0					17	10	3	0	0	0	0.027462	1	6463	6463		24.519	0	1	593620	+		7885	31458	6381	6391	8952	8952					0.08051469308611559
ELFKQARID	9	Unmodified	_ELFKQARID_					0	0	0			REV__ENSG00000198354|ENST00000360028|DCAF12L2	REV__ENSG00000198354|ENST00000360028|DCAF12L2	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.3599853515625	2	560.31148	1118.60841	4.1678	0.0023353	-2.2414	-0.0012559	1.9264	0.0010794	560.3104414987495	97.592	0.2594	97.592	97.479	97.738	0					7	5	2	0	0	0	0.027459	1	10740	10740		36.447	0	1	256650	+		7886	23011	6382	6392	8953	8953					0.053848168803369845
ELFKRTPRQ	9	Unmodified	_ELFKRTPRQ_					0	0	0		CNOT11|p.K199R|1|0.04|ENSG00000158435|chr2:101257872-101257872|A/G|missense_variant	CNOT11|p.K199R|1|0.04|ENSG00000158435|chr2:101257872-101257872|A/G|missense_variant	CNOT11|p.K199R|1|0.04|ENSG00000158435|chr2:101257872-101257872|A/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.3038330078125	2	587.838197	1173.66184	0.047164	2.7725E-05	-1.4851	-0.00087302	-1.438	-0.00084529	587.837355167115	62.724	0.31921	62.724	62.541	62.86	0					11	7	2	0	0	0	0.027426	1	5618	5618		31.53	2.3598	1	262320			7887	588	6383	6393	8954	8954					0.08195614382839267
ELFPALIL	8	Unmodified	_ELFPALIL_					0	0	0			REV__EPS15L1-SLC15A5|1|fusion	REV__EPS15L1-SLC15A5|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	459.2696838378906	2	458.281129	914.547705	1.3739	0.00062965	-2.0573	-0.00094284	-0.6834	-0.00031319	458.2801721166689	79.15	0.60471	79.15	78.869	79.474	0					17	14	2	0	0	0	0.028476	1	8017	8017		31.579	0	1	169270	+		7888	28113	6384	6394	8955	8955					0.08701331568056503
ELFPALILL	9	Unmodified	_ELFPALILL_					0	0	0			REV__EPS15L1-SLC15A5|1|fusion	REV__EPS15L1-SLC15A5|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.82177734375	2	514.823161	1027.63177	-0.39465	-0.00020317	-4.1841	-0.0021541	-4.5787	-0.0023572	514.8209735040269	116.77	2.0357	115.41	114.99	117.03	-1.3645					81	38	4	0	0	0	0.25214	2	10888	10888;10898		68.485	10.673	1	780510	+		7889	28113	6385	6395	8956;8957	8956					0.11905862664957567
ELFPFKMI	8	Unmodified	_ELFPFKMI_					0	0	0			REV__ENST00000507984.5_1_5:88119720-88122924:-|nuORF	REV__ENST00000507984.5_1_5:88119720-88122924:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.7804565429688	2	512.780439	1023.54633	-2.0862	-0.0010698	1.074	0.00055072	-1.0123	-0.00051907	512.7809960027776	49.788	2.1086	46.646	46.147	48.256	-3.1416					88	40	4	0	0	0	0.67745	1	2835	2835		47.916	7.1374	1	604860	+		7890	26909	6386	6396	8958	8958					0.035493742076482704
ELFPHSLLS	9	Unmodified	_ELFPHSLLS_					0	0	0		nc|ENSG00000125630|Q9H9Y6-4|POLR1B;nc|ENSG00000125630|Q9H9Y6-5|POLR1B;nc|ENSG00000125630|Q9H9Y6-2|POLR1B;ENSG00000125630|ENST00000263331|POLR1B;nc|ENSG00000125630|Q9H9Y6-3|POLR1B	nc|ENSG00000125630|Q9H9Y6-4|POLR1B	nc|ENSG00000125630|Q9H9Y6-4|POLR1B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.2814331054688	2	521.782025	1041.5495	0.14962	7.807E-05	2.9098	0.0015183	3.0594	0.0015963	521.7832128864272	97.731	0.85524	95.352	95.116	95.971	-2.3786					22	16	2	0	0	0	0.027426	1	8705	8705		44.117	0	1	28389			7891	3717	6387	6397	8959	8959					0.030383405859993218
ELFPWIHP	8	Unmodified	_ELFPWIHP_					0	0	0			REV__chr19:49680006-49680487|159|17.99|0.66|4.76|+|0|None,PRMT1|1	REV__chr19:49680006-49680487|159|17.99|0.66|4.76|+|0|None,PRMT1|1	MULTI-MSMS	OvCa9_classI_Rep3	3	519.774169921875	2	519.774003	1037.53345	1.0842	0.00056353	-1.0797	-0.0005612	0.0044681	2.3224E-06	519.7733182741239	128.34	2.792	127.25	126.36	129.15	-1.0933					96	55	4	0	0	0	0.67106	1	10103	10103		49.211	4.6797	1	251840	+		7892	15981	6388	6398	8960	8960					0.01618679139755841
ELFQKLPSK	9	Unmodified	_ELFQKLPSK_					0	0	0		nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.L1158Qfs*12|1|0.03|ENSG00000163939|chr3:52579114-52579115|-/ACTAAATTCTGGGGCTGAAAAGTACAATAACT|frameshift_variant;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1	nc|ENSG00000163939|Q86U86-6|PBRM1	nc|ENSG00000163939|Q86U86-6|PBRM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.2783203125	2	545.318774	1088.623	1.2316	0.00067162	0.25963	0.00014158	1.4912	0.0008132	545.3187177516337	119.26	1.0865	119.26	119.01	120.09	0					50	25	3	0	0	0	0.027462	1	13663	13663		40.778	3.6191	1	532690			7893	6382	6389	6399	8961	8961					0.08222889028479585
ELFRKLWA	8	Unmodified	_ELFRKLWA_					0	0	0			REV__ENST00000367578.1_1_1:181003164-181019478:+|nuORF	REV__ENST00000367578.1_1_1:181003164-181019478:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.7875366210938	2	531.808377	1061.6022	-0.29083	-0.00015467	0.98979	0.00052638	0.69896	0.00037171	532.3103652457092	88.07	1.2202	85.939	85.339	86.559	-2.1309					50	23	3	0	0	0	0.028476	1	5312	5312		45.952	1.5748	1	59876	+		7894	20316	6390	6400	8962	8962					0.0738634343947524
ELFSIANQVL	10	Unmodified	_ELFSIANQVL_					0	0	0			REV__tr|A0A553SQ43|A0A553SQ43_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_20350PE=3SV=1	REV__tr|A0A553SQ43|A0A553SQ43_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_20350PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3142700195312	2	567.313689	1132.61282	0.9405	0.00053356	-1.4514	-0.00082342	-0.51093	-0.00028986	567.3126999442823	115.55	1.0391	114.15	113.82	114.86	-1.3977					45	20	4	0	0	0	0.50999	1	10800	10800		52.937	0	1	282240	+		7895	30604	6391	6401	8963	8963					0.05182281303223135
ELFSLGKETP	10	Unmodified	_ELFSLGKETP_					0	0	0			REV__ENST00000553336.5_1_14:23938909-23944520:+|nuORF	REV__ENST00000553336.5_1_14:23938909-23944520:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	561.8048706054688	2	560.797872	1119.58119	-1.2069	-0.00067685	2.9282	0.0016421	1.7212	0.00096525	560.7983679354917	101.63	2.41	100.07	99.592	102	-1.5638					151	45	7	0	0	0	0.32926	2	6926	6926;6928		77.318	13.11	1	2421700	+		7896	18899	6392	6402	8964;8965	8964					0.026182885492971764
ELFSLGKETP	10	Unmodified	_ELFSLGKETP_					0	0	0			REV__ENST00000553336.5_1_14:23938909-23944520:+|nuORF	REV__ENST00000553336.5_1_14:23938909-23944520:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.8064575195312	2	560.797872	1119.58119	1.0498	0.00058871	0.52852	0.00029639	1.5783	0.0008851	560.7970989748085	102.23	2.4606	100.03	99.573	102.03	-2.1994					152	46	6	0	0	0	0.45822	1	9170	9170		60.118	1.3363	1	2187800	+		7897	18899	6392	6402	8966	8966					0.026182885492971764
ELFTEDQLN	9	Unmodified	_ELFTEDQLN_					0	0	0			REV__nc|ENSG00000089472|Q9BQS7-4|HEPH	REV__nc|ENSG00000089472|Q9BQS7-4|HEPH	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.802978515625	2	554.761486	1107.50842	0.030788	1.708E-05	0.87905	0.00048766	0.90984	0.00050474	554.7620763708504	66.628	0.41103	66.628	66.328	66.739	0					12	9	2	0	0	0	0.027462	1	6173	6173		20.947	9.4359	1	130340	+		7898	17208	6393	6403	8967	8967					-0.04103465244133986
ELFVVLFTP	9	Unmodified	_ELFVVLFTP_					0	0	0			REV__ENST00000596517.1_1_19:41305794-41306505:+|nuORF	REV__ENST00000596517.1_1_19:41305794-41306505:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.7913208007812	2	532.804968	1063.59538	1.4515	0.00077339	-2.8739	-0.0015312	-1.4224	-0.00075785	532.8029130690023	81.741	0.4046	81.741	81.532	81.937	0					13	9	2	0	0	0	0.027462	1	8417	8417		20.947	0	1	162380	+		7899	27996	6394	6404	8968	8968					0.06612985768242652
ELFWYGYG	8	Unmodified	_ELFWYGYG_					0	0	0			REV__nc|ENSG00000105492|O43699-4|SIGLEC6	REV__nc|ENSG00000105492|O43699-4|SIGLEC6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.2634887695312	2	517.734543	1033.45453	-0.64921	-0.00033612	2.339	0.001211	1.6898	0.00087487	518.2368905718807	56.059	0.25265	52.765	52.617	52.87	-3.2944					6	4	2	0	0	0	0.028476	1	3577	3577		23.037	11.526	1	14527	+		7900	17730	6395	6405	8969	8969					-0.06085592885187907
ELGALKAVL	9	Unmodified	_ELGALKAVL_					0	0	0			REV__ENST00000434014.1_1_1:16559094-16563153:-|nuORF	REV__ENST00000434014.1_1_1:16559094-16563153:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	458.232177734375	2	457.289485	912.564418	1.5143	0.00069247	-1.134	-0.00051856	0.38031	0.00017391	457.2887180085096	111.68	0.74216	110.57	110.25	110.99	-1.1038					26	14	2	0	0	0	0.027326	1	8166	8166		37.159	0	1	25016	+		7901	19111	6396	6406	8970	8970					0.10463832454001931
ELGAQVVHYI	10	Unmodified	_ELGAQVVHYI_					0	0	0			REV__AluSz_dup37824|chr7:44800399-44800695:-|1.8305009448369387|0.0026438264880892|9.44|426.0|15|2|anti-sense	REV__AluSz_dup37824|chr7:44800399-44800695:-|1.8305009448369387|0.0026438264880892|9.44|426.0|15|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	564.808349609375	2	564.806031	1127.59751	-0.6708	-0.00037887	1.0893	0.00061522	0.41845	0.00023634	564.8065459691159	99.395	2.9276	98.564	97.919	100.85	-0.83052					122	58	4	0	0	0	0.39172	1	9083	9083		69.628	6.0938	1	405350	+		7902	15615	6397	6407	8971	8971					0.038814145060541705
ELGAWNLDP	9	Unmodified	_ELGAWNLDP_					0	0	0		ENST00000462054.6_2_X:53295593-53296058:-|nuORF	ENST00000462054.6_2_X:53295593-53296058:-|nuORF	ENST00000462054.6_2_X:53295593-53296058:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.30694580078125	2	507.748182	1013.48181	-0.060286	-3.061E-05	3.2119	0.0016309	3.1516	0.0016002	507.7497411665859	97.013	1.3796	96.054	95.281	96.661	-0.95857					50	27	3	0	0	0	0.027232	1	8723	8723		66.429	8.618	1	54692			7903	12193	6398	6408	8972	8972					-0.024391093448230095
ELGETIERENE	11	Unmodified	_ELGETIERENE_					0	0	0		nc|ENSG00000147036|Q6ZV70-2|LANCL3;ENSG00000147036|ENST00000378619|LANCL3	nc|ENSG00000147036|Q6ZV70-2|LANCL3	nc|ENSG00000147036|Q6ZV70-2|LANCL3	MULTI-SECPEP	OvCa9_classI_Rep2	2	439.57275390625	3	440.208889	1317.60484	-0.61836	-0.00027221	-0.6211	-0.00027341	-1.2395	-0.00054562	440.20845649950616	63.164	0.99883	60.42	60.056	61.055	-2.7444					33	18	3	0	0	0	0.025988	1	4806	4806		10.998	0	1	22668			7904	5324	6399	6409	8973	8973					-0.04125942474843214
ELGEYWLR	8	Unmodified	_ELGEYWLR_					0	0	0			REV__ENSG00000144935|ENST00000476941|TRPC1	REV__ENSG00000144935|ENST00000476941|TRPC1	MULTI-SECPEP	OvCa9_classI_Rep2	2	533.798828125	2	533.271824	1064.5291	0.71648	0.00038208	-0.91416	-0.0004875	-0.19768	-0.00010542	533.2711886479043	88.371	1.6276	87.003	86.641	88.268	-1.3676					89	32	5	0	0	0	0.028476	1	7891	7891		51.335	3.6781	1	434020	+		7905	19945	6400	6410	8974	8974					-0.0005883007381726202
ELGFRVELS	9	Unmodified	_ELGFRVELS_					0	0	0		tr|A0A7D6VP23|A0A7D6VP23_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14975PE=4SV=1	tr|A0A7D6VP23|A0A7D6VP23_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14975PE=4SV=1	tr|A0A7D6VP23|A0A7D6VP23_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14975PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	526.2860107421875	2	525.284931	1048.55531	0.26976	0.0001417	-0.89426	-0.00046974	-0.6245	-0.00032804	525.2844511785617	113.7	2.1235	113.58	113.02	115.14	-0.11777					119	42	4	0	0	0	0.52629	1	10782	10782		40.058	0.80534	1	925990			7906	34745	6401	6411	8975	8975					0.03297439097673305
ELGHPLFLPT	10	Unmodified	_ELGHPLFLPT_					0	0	0			REV__nc|ENSG00000061273|Q8WUI4-3|HDAC7	REV__nc|ENSG00000061273|Q8WUI4-3|HDAC7	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.8020629882812	2	562.310949	1122.60735	1.7016	0.00095682	2.0138	0.0011324	3.7154	0.0020892	562.3119924816988	131.27	0.56595	131.27	131.06	131.62	0					18	11	2	0	0	0	0.026994	1	15217	15217		19.104	0	1	189280	+		7907	16743	6402	6412	8976	8976					0.05094602511417179
ELGIIIING	9	Unmodified	_ELGIIIING_					0	0	0			REV__tr|A0A7D6ZS28|A0A7D6ZS28_9CLOTV-typeATPsynthasesubunitIOS=ClostridiumintestinaleOX=36845GN=HZF06_06130PE=3SV=1	REV__tr|A0A7D6ZS28|A0A7D6ZS28_9CLOTV-typeATPsynthasesubunitIOS=ClostridiumintestinaleOX=36845GN=HZF06_06130PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.309326171875	2	471.286943	940.559333	-0.31901	-0.00015035	3.4135	0.0016087	3.0945	0.0014584	471.28859629119404	24.386	0.3478	24.386	24.188	24.536	0					9	6	2	0	0	0	0.027462	1	430	430		23.042	0	1	13983	+		7908	32173	6403	6413	8977	8977					0.08667528591399787
ELGILTSVPK	10	Unmodified	_ELGILTSVPK_					0	0	0		nc|ENSG00000168356|Q9UI33-3|SCN11A;ENSG00000168356|ENST00000302328|SCN11A;SCN11A|p.I1370Rfs*14|1|0.04|ENSG00000168356|chr3:38850700-38850701|-/AGCG|frameshift_variant;nc|ENSG00000168356|Q9UI33-2|SCN11A	nc|ENSG00000168356|Q9UI33-3|SCN11A	nc|ENSG00000168356|Q9UI33-3|SCN11A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.7843627929688	2	528.818607	1055.62266	-0.974	-0.00051507	0.030853	1.6316E-05	-0.94315	-0.00049875	528.8186931946868	101.99	0.83699	99.794	99.522	100.36	-2.1994					39	15	3	0	0	0	0.02663	1	9172	9172		51.193	11.94	1	212650			7909	6895	6404	6414	8978	8978					0.09707469308614236
ELGKHAVSEG	10	Unmodified	_ELGKHAVSEG_					0	0	0		HIST1H2BJ|p.A108G|1|0.09|ENSG00000124635|chr6:27132428-27132428|G/C|missense_variant	HIST1H2BJ|p.A108G|1|0.09|ENSG00000124635|chr6:27132428-27132428|G/C|missense_variant	HIST1H2BJ|p.A108G|1|0.09|ENSG00000124635|chr6:27132428-27132428|G/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.6217041015625	2	513.764363	1025.51417	1.0826	0.00055621	2.1185	0.0010884	3.2011	0.0016446	513.7658283008553	65.463	0.25193	62.767	62.62	62.872	-2.6958					7	4	2	0	0	0	0.026681	1	5038	5038		44.377	0	1	11605			7910	14484	6405	6415	8979	8979					0.0024367805817746557
ELGKKYAQS	9	Unmodified	_ELGKKYAQS_					0	0	0			REV__tr|A0A7D6ZY92|A0A7D6ZY92_9CLOTelongationfactorGOS=ClostridiumintestinaleOX=36845GN=fusAPE=3SV=1	REV__tr|A0A7D6ZY92|A0A7D6ZY92_9CLOTelongationfactorGOS=ClostridiumintestinaleOX=36845GN=fusAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.789794921875	2	512.277106	1022.53966	0.022871	1.1716E-05	-2.0928	-0.0010721	-2.0699	-0.0010604	512.2761809935461	58.427	0.33488	58.427	58.153	58.488	0					10	7	2	0	0	0	0.027462	1	4948	4948		19.104	6.8967	1	426770	+		7911	32362	6406	6416	8980	8980					0.029291525806115715
ELGKTRVL	8	Unmodified	_ELGKTRVL_					0	0	0		ENST00000509980.5_1_4:122722579-122736524:+|nuORF;ENSG00000123737|ENST00000243498|EXOSC9;nc|ENSG00000123737|Q06265-2|EXOSC9	ENST00000509980.5_1_4:122722579-122736524:+|nuORF	ENST00000509980.5_1_4:122722579-122736524:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.6999816894531	2	458.284734	914.554916	2.5045	0.0011478	0.31813	0.00014579	2.8226	0.0012936	458.2847457829927	94.879	0.51424	94.879	94.604	95.119	0					23	11	3	0	0	0	0.028476	1	10337	10337		49.442	0	1	711820			7912	3612	6407	6417	8981	8981					0.09422064168484212
ELGLDSEVLP	10	Unmodified	_ELGLDSEVLP_					0	0	0		ENST00000495483.5_2_1:161137139-161146869:+|nuORF;ENSG00000143224|ENST00000367999|PPOX;ENST00000490768.1_1_1:161137040-161137992:+|nuORF	ENST00000495483.5_2_1:161137139-161146869:+|nuORF	ENST00000495483.5_2_1:161137139-161146869:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3126831054688	2	536.282054	1070.54956	2.1913	0.0011752	-2.1398	-0.0011475	0.051533	2.7636E-05	536.2801451557294	84.983	0.12236	84.983	84.882	85.004	0					4	2	2	0	0	0	0.026802	1	8890	8890		34.173	8.5985	1	105450			7913	12778	6408	6418	8982	8982					0.017102957953511577
ELGLLNYLGI	10	Unmodified	_ELGLLNYLGI_					0	0	0			REV__tr|A0A553SSV0|A0A553SSV0_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03775PE=3SV=1	REV__tr|A0A553SSV0|A0A553SSV0_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03775PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.9805297851562	2	552.818607	1103.62266	-0.52246	-0.00028883	-3.3871	-0.0018725	-3.9096	-0.0021613	553.3178295197434	40.323	0.26384	37.369	37.263	37.527	-2.9541					6	4	2	0	0	0	0.026871	1	1714	1714		15.642	3.435	1	8746.3	+		7914	30883	6409	6419	8983	8983					0.07499469308618245
ELGPPLSVT	9	Unmodified	_ELGPPLSVT_					0	0	0			REV__ENSG00000231213|ENST00000443512|PLSCR5	REV__ENSG00000231213|ENST00000443512|PLSCR5	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.2745056152344	2	456.755475	911.496398	-0.12585	-5.7482E-05	2.2747	0.001039	2.1488	0.00098148	456.75606763537706	56.219	0.28791	56.219	56.052	56.34	0					11	6	2	0	0	0	0.027462	1	4643	4643		31.955	0	1	78288	+		7915	23385	6410	6420	8984	8984					0.03710962803347684
ELGQPNTLI	9	Unmodified	_ELGQPNTLI_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1;ENST00000479107.1_1_6:33036772-33037066:-|nuORF	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.3227233886719	2	492.771657	983.528761	-0.63725	-0.00031402	0.82967	0.00040884	0.19242	9.4817E-05	492.77187526138033	54.985	0.30363	54.985	54.761	55.064	0					9	6	2	0	0	0	0.027462	1	4469	4469		26.693	0	1	156090			7916	9288	6411	6421	8985	8985					0.03633750206347486
ELGRILEGDVQ	11	Unmodified	_ELGRILEGDVQ_					0	0	0			REV__nc|ENSG00000149639|O94964-4|MTCL2;REV__ENST00000463491.1_1_20:35457204-35467793:-|nuORF;REV__SOGA1-SAMHD1|2|fusion	REV__nc|ENSG00000149639|O94964-4|MTCL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	615.3145141601562	2	614.830234	1227.64592	2.1268	0.0013076	0.076661	4.7134E-05	2.2034	0.0013547	614.8304670652319	118.06	0.45924	118.06	117.79	118.25	0					16	9	3	0	0	0	0.025423	1	13548	13548		66.962	38.88	1	179890	+		7917	20174;26132;29379	6412	6422	8986	8986					0.041198633552767205
ELGRRWER	8	Unmodified	_ELGRRWER_					0	0	0		ENST00000399640.3_1_8:134471412-134471994:-|nuORF	ENST00000399640.3_1_8:134471412-134471994:-|nuORF	ENST00000399640.3_1_8:134471412-134471994:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.2796020507812	2	551.299239	1100.58392	1.2559	0.00069235	0.88601	0.00048846	2.1419	0.0011808	551.299674579938	112.76	1.3825	112.64	112.33	113.71	-0.12173					60	27	3	0	0	0	0.028476	1	10794	10794		32.812	1.2826	1	120730			7918	11397	6413	6423	8987	8987					0.03765601517466166
ELGSIKPVIP	10	Unmodified	_ELGSIKPVIP_					0	0	0			REV__ENSG00000158321|ENST00000342771|AUTS2	REV__ENSG00000158321|ENST00000342771|AUTS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.8204956054688	2	526.82115	1051.62775	-0.62771	-0.00033069	-2.5996	-0.0013695	-3.2273	-0.0017002	526.8197008542012	64.039	1.4071	60.564	60.298	61.705	-3.475					73	28	4	0	0	0	0.52439	1	4547	4547		51.193	6.8155	1	804140	+		7919	20564	6414	6424	8988	8988					0.10399773171252491
ELGVLIHSYEK	11	Unmodified	_ELGVLIHSYEK_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	OvCa99_classI_Rep5	1	644.3541870117188	2	644.350803	1286.68705	2.163	0.0013937	-1.9611	-0.0012637	0.20184	0.00013006	644.3502891273163	117.58	0.93233	117.58	117.13	118.06	0					45	19	4	0	0	0	0.43993	1	13455	13455		58.23	3.5076	1	810540	+		7920	28906	6415	6425	8989	8989					0.05517624394769882
ELGVLIHSYEK	11	Unmodified	_ELGVLIHSYEK_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	644.350803	1286.68705	2.163	0.0013937	-1.9611	-0.0012637	0.20184	0.00013006	644.3502891273163	117.58	0.93233	117.58	117.13	118.06	0	0	0	NaN	58.23	45	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	810540	+		7921	28906	6415	6425							0.05517624394769882
ELGVPKDPLL	10	Unmodified	_ELGVPKDPLL_					0	0	0		nc|ENSG00000113073|Q96Q91-4|SLC4A9;nc|ENSG00000113073|Q96Q91-2|SLC4A9;ENSG00000113073|ENST00000506757|SLC4A9;nc|ENSG00000113073|Q96Q91|SLC4A9;SLC4A9|p.A543Pfs*16|1|0.63|ENSG00000113073|chr5:140364528-140364529|-/CCTGCTCTTCTCTTTCAGCAGGTAGGAGA|frameshift_variant	nc|ENSG00000113073|Q96Q91-4|SLC4A9	nc|ENSG00000113073|Q96Q91-4|SLC4A9	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.6640625	2	540.818607	1079.62266	-0.76161	-0.00041189	1.66	0.00089774	0.89836	0.00048585	541.3213235132288	93.069	2.1406	91.108	90.606	92.747	-1.9617					120	42	4	0	0	0	0.026849	1	6019	6019		49.442	15.926	1	171260			7922	2947	6416	6426	8990	8990					0.08603469308627609
ELGVSYDD	8	Unmodified	_ELGVSYDD_					0	0	0		tr|A0A7D6ZY13|A0A7D6ZY13_9CLOTUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligaseOS=ClostridiumintestinaleOX=36845GN=murFPE=3SV=1	tr|A0A7D6ZY13|A0A7D6ZY13_9CLOTUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligaseOS=ClostridiumintestinaleOX=36845GN=murFPE=3SV=1	tr|A0A7D6ZY13|A0A7D6ZY13_9CLOTUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligaseOS=ClostridiumintestinaleOX=36845GN=murFPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	449.28656005859375	2	449.195448	896.376342	0.67775	0.00030444	-4.2523	-0.0019101	-3.5746	-0.0016057	449.19355522629894	52.805	0.56515	52.805	52.566	53.131	0					21	12	3	0	0	0	0.028476	1	4158	4158		18.324	0	1	679950			7923	35905	6417	6427	8991	8991					-0.07599070261096585
ELHASTFPL	9	Unmodified	_ELHASTFPL_					0	0	0			REV__ENSG00000119608|ENST00000556489|PROX2	REV__ENSG00000119608|ENST00000556489|PROX2	MULTI-MSMS	OvCa99_classI_Rep5	1	507.7685546875	2	507.766374	1013.5182	2.4386	0.0012382	1.0457	0.00053098	3.4843	0.0017692	507.7669987975958	94.828	0.68312	94.828	94.56	95.244	0					29	15	4	0	0	0	0.52083	1	10332	10332		40.573	1.3198	1	696370	+		7924	18453	6418	6428	8992	8992					0.01197767551900597
ELHDVDKAI	9	Unmodified	_ELHDVDKAI_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-MSMS	OvCa99_classI_Rep5	1	520.2755737304688	2	520.274564	1038.53457	-0.54838	-0.00028531	-0.041632	-2.166E-05	-0.59001	-0.00030697	520.2745564999113	72.979	0.75548	72.979	72.723	73.479	0					50	18	5	0	0	0	0.16562	1	7141	7141		82.241	5.4664	1	1530800			7925	889	6419	6429	8993	8993					0.016848487179913718
ELHDVDKAI	9	Unmodified	_ELHDVDKAI_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-MATCH	OvCa9_classI_Rep2	2		2	520.274564	1038.53457	-0.2709	-0.00014094	-1.266	-0.00065868	-1.5369	-0.00079962	520.2739658481055	75.142	0.67317	73.171	72.796	73.469	-1.9711	0.095966	-0.00059606	NaN	82.241	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19488			7926	889	6419	6429							0.016848487179913718
ELHEDLTYI	9	Unmodified	_ELHEDLTYI_					0	0	0			REV__ENSG00000182752|ENST00000328252|PAPPA	REV__ENSG00000182752|ENST00000328252|PAPPA	MULTI-MSMS	OvCa9_classI_Rep2	2	566.7819213867188	2	566.779679	1131.5448	0.55298	0.00031342	2.9832	0.0016908	3.5362	0.0020042	566.7812044217159	126.11	1.0847	125.88	125.55	126.64	-0.2359					58	21	4	0	0	0	0.56889	1	12319	12319		35.618	5.1146	1	188320	+		7927	22315	6420	6430	8994	8994					-0.015705883474538496
ELHFDLHTW	9	Unmodified	_ELHFDLHTW_					0	0	0			REV__ENSG00000100926|ENST00000261789|TM9SF1	REV__ENSG00000100926|ENST00000261789|TM9SF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	599.365966796875	2	599.288005	1196.56146	1.7786	0.0010659	-3.8084	-0.0022823	-2.0297	-0.0012164	599.285879342427	127.11	0.8946	127.11	126.73	127.63	0					34	19	3	0	0	0	0.027392	1	14744	14744		73.975	29.858	1	341650	+		7928	17460	6421	6431	8995	8995					-0.02896042670818133
ELHGFILEN	9	Unmodified	_ELHGFILEN_					0	0	0		tr|A0A7D6VTZ6|A0A7D6VTZ6_9CLOTprotein-tyrosine-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_18805PE=3SV=1	tr|A0A7D6VTZ6|A0A7D6VTZ6_9CLOTprotein-tyrosine-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_18805PE=3SV=1	tr|A0A7D6VTZ6|A0A7D6VTZ6_9CLOTprotein-tyrosine-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_18805PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.3031005859375	2	536.277106	1070.53966	-1.9923	-0.0010684	1.2396	0.00066478	-0.75268	-0.00040364	536.277612185854	101.15	0.74231	100.39	100.17	100.91	-0.764					37	14	3	0	0	0	0.027462	1	9245	9245		42.396	0	1	66815			7929	35154	6422	6432	8996	8996					0.007211525806042118
ELHGKTEKLN	10	Unmodified	_ELHGKTEKLN_					0	0	0			REV__ENST00000598007.2_1_20:19737775-19737994:-|nuORF	REV__ENST00000598007.2_1_20:19737775-19737994:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.2642211914062	2	584.81967	1167.62479	1.922	0.001124	4.2052	0.0024593	6.1272	0.0035833	584.8222901859772	137.51	0.29034	137.51	137.4	137.69	0					6	5	2	0	0	0	0.026968	1	16059	16059		22.58	0	1	11906	+		7930	28006	6423	6433	8997	8997					0.04767898046452501
ELHGRLTKV	9	Unmodified	_ELHGRLTKV_					0	0	0			REV__ENSG00000159259|ENST00000314103|CHAF1B	REV__ENSG00000159259|ENST00000314103|CHAF1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.7922973632812	2	526.81419	1051.61383	-1.0122	-0.00053322	-1.1873	-0.00062547	-2.1994	-0.0011587	526.8136476775093	66.121	0.3441	66.121	65.867	66.212	0					13	8	3	0	0	0	0.027462	1	6118	6118		17.365	4.4058	1	1032000	+		7931	20604	6424	6434	8998	8998					0.09008540462787096
ELHKLTIEK	9	Unmodified	_ELHKLTIEK_					0	0	0			REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	MULTI-SECPEP	OvCa9_classI_Rep3	3	556.2568969726562	2	555.829506	1109.64446	-0.83098	-0.00046189	-0.17727	-9.8534E-05	-1.0083	-0.00056042	555.8291337765228	88.546	0.63789	86.415	86.112	86.75	-2.1309					25	12	3	0	0	0	0.027461	1	5402	5402		58.782	21.623	1	40890	+		7932	18686	6425	6435	8999	8999					0.09402274057174509
ELHKLTIEK	9	Unmodified	_ELHKLTIEK_					0	0	0			REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	REV__nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	555.829506	1109.64446	-0.4192	-0.000233	-0.69145	-0.00038433	-1.1106	-0.00061733	555.8290759598939	88.949	0.59116	86.347	86.085	86.676	-2.6027	-0.034455	-0.00033214	NaN	40.778	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32597	+		7933	18686	6425	6435							0.09402274057174509
ELHKQYYYIHL	11	Unmodified	_ELHKQYYYIHL_					0	0	0			REV__tr|A0A553SLH0|A0A553SLH0_NIACIDUF4397domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20595PE=4SV=1	REV__tr|A0A553SLH0|A0A553SLH0_NIACIDUF4397domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20595PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	502.2750244140625	3	502.92951	1505.7667	-0.46186	-0.00023228	3.6871	0.0018543	3.2252	0.0016221	502.9312886509504	78.923	1.198	76.583	76.315	77.513	-2.3399					76	23	4	0	0	0	0.026189	1	4215	4215		20.03	0.7678	1	430650	+		7934	30224	6426	6436	9000	9000					0.03404691068749344
ELHKSEESI	9	Unmodified	_ELHKSEESI_					0	0	0		ENSG00000164010|ENST00000372517|ERMAP	ENSG00000164010|ENST00000372517|ERMAP	ENSG00000164010|ENST00000372517|ERMAP	MULTI-MSMS	OvCa99_classI_Rep5	1	536.2758178710938	2	536.269478	1070.5244	2.0959	0.001124	3.5251	0.0018904	5.621	0.0030144	536.2712614318439	92.799	0.79031	92.799	92.515	93.305	0					28	18	2	0	0	0	0.13326	1	10043	10043		88.177	13.134	1	2247600			7935	6392	6427	6437	9001	9001					-0.008037590072262901
ELHLAIPAK	9	Unmodified	_ELHLAIPAK_					0	0	0		nc|ENSG00000099840|Q1ZYL8-3|IZUMO4;nc|ENSG00000099840|Q1ZYL8-4|IZUMO4;ENST00000591894.5_1_19:2096998-2098450:+|nuORF;ENST00000498554.5_1_19:2096914-2097955:+|nuORF;ENST00000497445.5_1_19:2096872-2097684:+|nuORF;ENST00000478879.5_1_19:2096872-2098127:+|nuORF;ENST00000590985.2_1_19:2096914-2098127:+|nuORF;nc|ENSG00000099840|Q1ZYL8-2|IZUMO4;ENSG00000099840|ENST00000395301|IZUMO4;ENST00000588003.5_1_19:2097070-2098323:+|nuORF	nc|ENSG00000099840|Q1ZYL8-3|IZUMO4	nc|ENSG00000099840|Q1ZYL8-3|IZUMO4	MULTI-MSMS	OvCa9_classI_Rep2	2	496.29791259765625	2	496.300384	990.586216	0.96784	0.00048034	-1.0294	-0.00051091	-0.061585	-3.0565E-05	496.29974032476565	30.157	0.64175	27.447	27.212	27.853	-2.7097					19	12	2	0	0	0	0.6959	1	791	791		19.36	1.0356	1	19688			7936	1983	6428	6438	9002	9002					0.0905463720255284
ELHLCYAHA	9	Unmodified	_ELHLCYAHA_					0	0	0			REV__ENSG00000278870|ENST00000623849|OR51G1	REV__ENSG00000278870|ENST00000623849|OR51G1	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.8173828125	2	528.750201	1055.48585	-1.7249	-0.00091203	-2.4344	-0.0012872	-4.1593	-0.0021992	528.7489688297419	137.7	1.7053	136.62	136.15	137.86	-1.0858					54	34	2	0	0	0	0.027462	1	11318	11318		31.955	2.8053	1	28841	+		7937	23647	6429	6439	9003	9003					-0.03967343122758393
ELHNPLQTV	9	Unmodified	_ELHNPLQTV_					0	0	0		ENSG00000153790|ENST00000283905|C7orf31	ENSG00000153790|ENST00000283905|C7orf31	ENSG00000153790|ENST00000283905|C7orf31	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.275146484375	2	525.782556	1049.55056	-1.4949	-0.00078598	1.9015	0.00099976	0.40659	0.00021378	525.7832365966625	93.799	2.0228	91.838	91.476	93.499	-1.9617					69	39	3	0	0	0	0.027425	1	6120	6120		69.628	2.134	1	246630			7938	5693	6430	6440	9004	9004					0.027765549548803392
ELHNQPDTD	9	Unmodified	_ELHNQPDTD_					0	0	0			REV__ENST00000481698.1_1_22:19020011-19020715:-|nuORF	REV__ENST00000481698.1_1_22:19020011-19020715:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	533.7996215820312	2	534.73326	1067.45197	0.22303	0.00011926	3.0107	0.0016099	3.2338	0.0017292	534.7349035507092	89.893	0.61529	87.812	87.644	88.259	-2.0805					13	11	2	0	0	0	0.027462	1	5594	5594		29.15	1.2673	1	12124	+		7939	26485	6431	6441	9005	9005					-0.07906093080805476
ELHPKHYPK	9	Unmodified	_ELHPKHYPK_					0	0	0		FOXN4|p.S424Mfs*7|1|0.03|ENSG00000139445|chr12:109281432-109281433|-/ATTCCCTGTTGGCTGCCATT|frameshift_variant;ENSG00000139445|ENST00000299162|FOXN4	FOXN4|p.S424Mfs*7|1|0.03|ENSG00000139445|chr12:109281432-109281433|-/ATTCCCTGTTGGCTGCCATT|frameshift_variant	FOXN4|p.S424Mfs*7|1|0.03|ENSG00000139445|chr12:109281432-109281433|-/ATTCCCTGTTGGCTGCCATT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.7941284179688	2	574.81419	1147.61383	1.8685	0.001074	-3.0823	-0.0017717	-1.2138	-0.00069772	574.8125029204934	106.67	0.35698	106.67	106.45	106.81	0					13	7	2	0	0	0	0.027456	1	11993	11993		23.042	0	1	190570			7940	4776	6432	6442	9006	9006					0.04592540462795114
ELHQLHRC	8	Unmodified	_ELHQLHRC_					0	0	0			REV__nc|ENSG00000103995|O94986-1|CEP152	REV__nc|ENSG00000103995|O94986-1|CEP152	MULTI-MSMS	OvCa9_classI_Rep2	2	518.261962890625	2	518.261268	1034.50798	1.3847	0.00071764	1.1198	0.00058033	2.5045	0.001298	518.2616936757189	128.68	1.5825	128.45	128.13	129.71	-0.22696					76	31	3	0	0	0	0.73938	1	12646	12646		31.955	0	1	418450	+		7941	17639	6433	6443	9007	9007					-0.007891186543020012
ELHRLAAGNV	10	Unmodified	_ELHRLAAGNV_					0	0	0		tr|A0A553SPN6|A0A553SPN6_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_26695PE=3SV=1	tr|A0A553SPN6|A0A553SPN6_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_26695PE=3SV=1	tr|A0A553SPN6|A0A553SPN6_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_26695PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	540.3018188476562	2	540.301447	1078.58834	-1.1982	-0.00064737	1.0886	0.00058817	-0.10958	-5.9206E-05	540.3019592033955	43.715	0.81022	43.715	43.185	43.995	0					40	18	4	0	0	0	0.59317	1	2916	2916		42.864	5.0528	1	1035400			7942	34066	6434	6444	9008	9008					0.052190659403549944
ELHRRLWE	8	Unmodified	_ELHRRLWE_					0	0	0			REV__ENST00000494367.1_1_6:29974674-29976922:+|nuORF	REV__ENST00000494367.1_1_6:29974674-29976922:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	569.80908203125	2	569.809439	1137.60433	-0.28404	-0.00016185	-3.8785	-0.00221	-4.1625	-0.0023718	569.8071675593832	29.828	0.44993	29.828	29.536	29.986	0					16	8	3	0	0	0	0.74229	1	1100	1100		30.504	3.8107	1	92791	+		7943	26725	6435	6445	9009	9009					0.041027721772934456
ELHRRSPL	8	Unmodified	_ELHRRSPL_					0	0	0			REV__chr16:29863730-29864304|378|16.69|0.65|4.69|+|1|CDIPTOSP,CDIPTOSP|1	REV__chr16:29863730-29864304|378|16.69|0.65|4.69|+|1|CDIPTOSP,CDIPTOSP|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.8306579589844	2	504.290882	1006.56721	-0.17742	-8.9473E-05	2.6881	0.0013556	2.5107	0.0012661	504.29185950883675	58.628	0.36631	58.628	58.446	58.812	0					15	8	3	0	0	0	0.028476	1	4996	4996		44.377	14.059	1	555680	+		7944	15931	6436	6446	9010	9010					0.06419100631524088
ELHSNAVNLL	10	Unmodified	_ELHSNAVNLL_					0	0	0		nc|ENSG00000111785|Q9NVN3|RIC8B;nc|ENSG00000111785|Q9NVN3-1|RIC8B;ENSG00000111785|ENST00000392837|RIC8B;nc|ENSG00000111785|Q9NVN3-3|RIC8B;nc|ENSG00000111785|Q9NVN3-4|RIC8B	nc|ENSG00000111785|Q9NVN3|RIC8B	nc|ENSG00000111785|Q9NVN3|RIC8B	MULTI-SECPEP	OvCa9_classI_Rep2	2	556.2964477539062	2	555.301113	1108.58767	-1.5936	-0.00088492	-1.9207	-0.0010666	-3.5143	-0.0019515	555.2999269504767	145.78	0.64355	145.55	145.28	145.92	-0.22696					18	12	2	0	0	0	0.02717	1	14724	14724		23.523	0	1	22934			7945	2852	6437	6447	9011	9011					0.03772226500677789
ELHVKVLIN	9	Unmodified	_ELHVKVLIN_					0	0	0			REV__tr|A0A7D6VUF2|A0A7D6VUF2_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12925PE=4SV=1	REV__tr|A0A7D6VUF2|A0A7D6VUF2_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12925PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	532.7899169921875	2	532.826766	1063.63898	-1.499	-0.00079871	1.0026	0.0005342	-0.49643	-0.00026451	532.8271128930527	104.96	0.83955	104.38	104.02	104.86	-0.57639					29	16	2	0	0	0	0.027461	1	9709	9709		49.442	0	1	23100	+		7946	31672	6438	6448	9012	9012					0.10970595265393968
ELHYGVRIFA	10	Unmodified	_ELHYGVRIFA_					0	0	0			REV__SEMA3E|p.Q570Sfs*24|1|0.08|ENSG00000170381|chr7:83387011-83387011|A/-|frameshift_variant	REV__SEMA3E|p.Q570Sfs*24|1|0.08|ENSG00000170381|chr7:83387011-83387011|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	602.8260498046875	2	602.827298	1203.64004	-1.3677	-0.00082446	-2.0265	-0.0012216	-3.3941	-0.0020461	602.8260393808384	68.613	1.5415	65.993	65.671	67.213	-2.6203					87	30	4	0	0	0	0.62712	1	5413	5413		34.173	13.226	1	469290	+		7947	21535	6439	6449	9013	9013					0.046368096342803256
ELIAELRR	8	Unmodified	_ELIAELRR_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;ENST00000549137.1_1_12:50039600-50046016:-|nuORF;nc|ENSG00000157827|Q96PY5|FMNL2;ENSG00000157827|ENST00000288670|FMNL2	nc|ENSG00000161791|Q8IVF7-2|FMNL3;nc|ENSG00000157827|Q96PY5|FMNL2	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-MSMS	OvCa99_classI_Rep5	1	500.80462646484375	2	500.300916	998.587279	-0.83481	-0.00041766	2.8351	0.0014184	2.0003	0.0010008	500.3010897037563	50.394	1.1799	50.394	49.813	50.993	0					56	26	5	0	0	0	0.71267	1	3828	3828		40.778	0	1	1407600			7948	6138;5913	6440	6450	9014	9014					0.08792851571479332
ELIALPRPEL	10	Unmodified	_ELIALPRPEL_					0	0	0			REV__nc|ENSG00000138606|Q7M4L6-2|SHF	REV__nc|ENSG00000138606|Q7M4L6-2|SHF	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8433227539062	2	575.845156	1149.67576	-4.018	-0.0023138	0.54994	0.00031668	-3.4681	-0.0019971	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.62299	1	12347	12347		39.253	2.8061	1	445630	+		7949	28884	6441	6451	9015	9015					0.10690847091291289
ELIAPKPRLSL	11	Unmodified	_ELIAPKPRLSL_					0	0	0		tr|A0A553STR8|A0A553STR8_NIACIAlpha/betahydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05410PE=4SV=1	tr|A0A553STR8|A0A553STR8_NIACIAlpha/betahydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05410PE=4SV=1	tr|A0A553STR8|A0A553STR8_NIACIAlpha/betahydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05410PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	412.9270935058594	3	412.927329	1235.76016	-0.25244	-0.00010424	-2.0007	-0.00082612	-2.2531	-0.00093036	412.92657077571874	54.81	2.7333	51.996	51.573	54.306	-2.8139					157	54	5	0	0	0	0.67685	1	3809	3809		37.6	0.091722	1	2429000			7950	34524	6442	6452	9016	9016					0.15170797908035638
ELIAPKPRLSL	11	Unmodified	_ELIAPKPRLSL_					0	0	0		tr|A0A553STR8|A0A553STR8_NIACIAlpha/betahydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05410PE=4SV=1	tr|A0A553STR8|A0A553STR8_NIACIAlpha/betahydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05410PE=4SV=1	tr|A0A553STR8|A0A553STR8_NIACIAlpha/betahydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05410PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	412.9276123046875	3	412.927329	1235.76016	-0.45561	-0.00018813	-2.1307	-0.00087982	-2.5863	-0.0010679	412.926517070453	55.311	2.1325	52.016	51.648	53.781	-3.2944					136	41	5	0	0	0	0.68709	1	3495	3495		34.087	3.5176	1	2139000			7951	34524	6442	6452	9017	9017					0.15170797908035638
ELIAVSDSR	9	Unmodified	_ELIAVSDSR_					0	0	0			REV__nc|ENSG00000088756|Q9P2N2-3|ARHGAP28	REV__nc|ENSG00000088756|Q9P2N2-3|ARHGAP28	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.27532958984375	2	495.266739	988.518924	-0.5566	-0.00027567	0.77891	0.00038577	0.22231	0.0001101	495.2671075903754	55.682	0.53449	55.682	55.559	56.094	0					16	12	2	0	0	0	0.027462	1	4556	4556		10.866	0	1	170540	+		7952	17180	6443	6453	9018	9018					0.0242056220096174
ELIDNNGNSL	10	Unmodified	_ELIDNNGNSL_					0	0	0		nc|ENSG00000145934|Q9NT68-2|TENM2;ENSG00000145934|ENST00000518659|TENM2	nc|ENSG00000145934|Q9NT68-2|TENM2	nc|ENSG00000145934|Q9NT68-2|TENM2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.7879638671875	2	544.76456	1087.51457	-0.94927	-0.00051713	2.2806	0.0012424	1.3313	0.00072526	544.7658036384403	79.826	0.23952	77.075	76.891	77.13	-2.7514					8	4	2	0	0	0	0.026465	1	6472	6472		72.879	0	1	104410			7953	5255	6444	6454	9019	9019					-0.025689470126053493
ELIDQRVY	8	Unmodified	_ELIDQRVY_					0	0	0		tr|A0A553SQ61|A0A553SQ61_NIACIToxicanionresistanceproteinOS=NialliacirculansOX=1397GN=CEQ21_20525PE=3SV=1	tr|A0A553SQ61|A0A553SQ61_NIACIToxicanionresistanceproteinOS=NialliacirculansOX=1397GN=CEQ21_20525PE=3SV=1	tr|A0A553SQ61|A0A553SQ61_NIACIToxicanionresistanceproteinOS=NialliacirculansOX=1397GN=CEQ21_20525PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	518.2753295898438	2	518.277106	1034.53966	-0.79015	-0.00040952	-0.65057	-0.00033717	-1.4407	-0.00074669	518.2766432487163	29.412	0.59742	29.412	29.237	29.835	0					31	11	4	0	0	0	0.64026	1	1043	1043		55.504	0.72789	1	509400			7954	34123	6445	6455	9020	9020					0.023771525806296268
ELIEGNKT	8	Unmodified	_ELIEGNKT_					0	0	0			REV__nc|ENSG00000214595|Q6ZMW3-2|EML6;REV__ENST00000553281.5_1_14:89088194-89171927:-|nuORF	REV__nc|ENSG00000214595|Q6ZMW3-2|EML6	MULTI-SECPEP	OvCa99_classI_Rep5	1	451.7694396972656	2	452.242732	902.470912	0.23188	0.00010487	0.50545	0.00022859	0.73733	0.00033345	452.2428960464216	69.202	0.32666	69.202	69.106	69.433	0					10	7	2	0	0	0	0.028476	1	6584	6584		10.866	0.6003	1	206180	+		7955	29130;21096	6446	6456	9021	9021					0.0157748828091826
ELIEGNKT	8	Unmodified	_ELIEGNKT_					0	0	0			REV__nc|ENSG00000214595|Q6ZMW3-2|EML6;REV__ENST00000553281.5_1_14:89088194-89171927:-|nuORF	REV__nc|ENSG00000214595|Q6ZMW3-2|EML6	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	452.242732	902.470912	-0.53075	-0.00024003	0.85919	0.00038856	0.32845	0.00014854	452.24257191115606	72.528	0.43706	69.132	68.96	69.397	-3.3961	-0.035276	0.00022083	NaN	6.3127	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24488	+		7956	29130;21096	6446	6456							0.0157748828091826
ELIEIVIDR	9	Unmodified	_ELIEIVIDR_					0	0	0			REV__tr|A0A553SLJ6|A0A553SLJ6_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20775PE=4SV=1	REV__tr|A0A553SLJ6|A0A553SLJ6_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20775PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	550.2788696289062	2	550.321514	1098.62847	0.026083	1.4354E-05	0.53848	0.00029633	0.56456	0.00031069	550.3218046206078	94.486	1.0324	93.386	93.214	94.246	-1.0995					32	20	2	0	0	0	0.027462	1	8448	8448		34.173	0	1	83080	+		7957	30230	6447	6457	9022	9022					0.08310567820262804
ELIEKPNP	8	Unmodified	_ELIEKPNP_					0	0	0			REV__tr|A0A7D6ZIR7|A0A7D6ZIR7_9CLOTMethyltransferasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08130PE=4SV=1	REV__tr|A0A7D6ZIR7|A0A7D6ZIR7_9CLOTMethyltransferasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08130PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	469.8065185546875	2	470.260925	938.507297	2.0312	0.00095521	3.9051	0.0018364	5.9364	0.0027916	470.26041406065315	87.655	0.24824	87.655	87.505	87.754	0					7	5	2	0	0	0	0.028476	1	9287	9287		106.42	32.44	1	78433	+		7958	32067	6448	6458	9023	9023					0.035583651776164515
ELIEMKRTL	9	Unmodified	_ELIEMKRTL_					0	0	0		ENSG00000171446|ENST00000301656|KRT27	ENSG00000171446|ENST00000301656|KRT27	ENSG00000171446|ENST00000301656|KRT27	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.7996826171875	2	566.823366	1131.63218	1.7441	0.0009886	-1.1387	-0.00064546	0.60537	0.00034314	566.8228254564323	78.85	0.72644	78.85	78.625	79.352	0					32	17	2	0	0	0	0.027402	1	8005	8005		76.774	0	1	879450			7959	7195	6449	6459	9024	9024					0.07162914322498182
ELIEWKNN	8	Unmodified	_ELIEWKNN_					0	0	0		tr|A0A553SGG4|A0A553SGG4_NIACIGTPpyrophosphokinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10825PE=4SV=1	tr|A0A553SGG4|A0A553SGG4_NIACIGTPpyrophosphokinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10825PE=4SV=1	tr|A0A553SGG4|A0A553SGG4_NIACIGTPpyrophosphokinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10825PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.756591796875	2	523.269281	1044.52401	2.2801	0.0011931	0.22418	0.00011731	2.5043	0.0013104	523.2691745017516	86.493	0.7833	86.493	86.271	87.054	0					36	18	3	0	0	0	0.028476	1	9114	9114		58.782	0	1	1457100			7960	33154	6450	6460	9025	9025					0.0035286606357658457
ELIFPSVLFL	10	Unmodified	_ELIFPSVLFL_					0	0	0			REV__ENSG00000159267|ENST00000674895|HLCS	REV__ENSG00000159267|ENST00000674895|HLCS	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3419189453125	2	589.347	1176.67945	-3.0463	-0.0017953	-3.7941	-0.002236	-6.8404	-0.0040314	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.76627	1	15096	15096		23.042	0.46283	1	272220	+		7961	20606	6451	6461	9026	9026					0.09817516865132347
ELIGLCVPEP	10	Unmodified	_ELIGLCVPEP_					0	0	0		ENST00000396953.6_2_3:12882746-12883025:-|nuORF	ENST00000396953.6_2_3:12882746-12883025:-|nuORF	ENST00000396953.6_2_3:12882746-12883025:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.7643432617188	2	535.283543	1068.55253	-1.009	-0.0005401	-3.3642	-0.0018008	-4.3732	-0.0023409	535.2798599398454	78.926	0.80605	76.175	76.038	76.844	-2.7514					18	16	2	0	0	0	0.026635	1	6406	6406		31.53	0	1	42719			7962	11329	6452	6462	9027	9027					0.020998476484919593
ELIGLWIGI	9	Unmodified	_ELIGLWIGI_					0	0	0			REV__nc|ENSG00000134343|Q9BYT9-2|ANO3	REV__nc|ENSG00000134343|Q9BYT9-2|ANO3	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.29522705078125	2	507.305136	1012.59572	0.28198	0.00014305	-1.4936	-0.00075773	-1.2117	-0.00061468	507.3040169003776	114.41	0.91737	114.41	114.06	114.98	0					29	19	2	0	0	0	0.027462	1	13068	13068		40.573	17.993	1	366770	+		7963	19198	6453	6463	9028	9028					0.08992405488095301
ELIHFVVFI	9	Unmodified	_ELIHFVVFI_					0	0	0			REV__L1M1_dup621|chr1:224985612-224987088:+|1.1406864670825911|0.0275683224481481|5.37|427.0|94|3|anti-sense	REV__L1M1_dup621|chr1:224985612-224987088:+|1.1406864670825911|0.0275683224481481|5.37|427.0|94|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.8251342773438	2	558.826235	1115.63792	0.75211	0.0004203	-2.9211	-0.0016324	-2.169	-0.0012121	558.8244580499451	116.69	1.1889	115.33	114.89	116.08	-1.3645					46	22	4	0	0	0	0.32337	1	10896	10896		60.294	2.4827	1	61463	+		7964	28351	6454	6464	9029	9029					0.08472380896455434
ELIHFVVFI	9	Unmodified	_ELIHFVVFI_					0	0	0			REV__L1M1_dup621|chr1:224985612-224987088:+|1.1406864670825911|0.0275683224481481|5.37|427.0|94|3|anti-sense	REV__L1M1_dup621|chr1:224985612-224987088:+|1.1406864670825911|0.0275683224481481|5.37|427.0|94|3|anti-sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	558.826235	1115.63792	-0.036781	-2.0554E-05	-2.1115	-0.00118	-2.1483	-0.0012005	558.8250021669413	115.57	1.4836	115.45	114.9	116.38	-0.11777	0.063188	-0.00020172	NaN	60.294	43	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41397	+		7965	28351	6454	6464							0.08472380896455434
ELIHFVVFI	9	Unmodified	_ELIHFVVFI_					0	0	0			REV__L1M1_dup621|chr1:224985612-224987088:+|1.1406864670825911|0.0275683224481481|5.37|427.0|94|3|anti-sense	REV__L1M1_dup621|chr1:224985612-224987088:+|1.1406864670825911|0.0275683224481481|5.37|427.0|94|3|anti-sense	MULTI-MATCH	OvCa9_classI_Rep3	3		2	558.826235	1115.63792	-1.0223	-0.00057129	-1.1495	-0.00064238	-2.1718	-0.0012137	558.8255016764094	116.43	1.5333	115.38	114.95	116.48	-1.0414	-0.0025293	0.00087346	NaN	60.294	45	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50082	+		7966	28351	6454	6464							0.08472380896455434
ELIHFVVFI	9	Unmodified	_ELIHFVVFI_					0	0	0			REV__L1M1_dup621|chr1:224985612-224987088:+|1.1406864670825911|0.0275683224481481|5.37|427.0|94|3|anti-sense	REV__L1M1_dup621|chr1:224985612-224987088:+|1.1406864670825911|0.0275683224481481|5.37|427.0|94|3|anti-sense	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	558.826235	1115.63792	0.75211	0.0004203	-2.9211	-0.0016324	-2.169	-0.0012121	558.8244580499451	116.69	1.1889	115.33	114.89	116.08	-1.3645	-0.060658	-0.0011065	NaN	60.294	46	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61463	+		7967	28351	6454	6464							0.08472380896455434
ELIHISQRS	9	Unmodified	_ELIHISQRS_					0	0	0			REV__nc|ENSG00000079156|Q9BZF3-6|OSBPL6	REV__nc|ENSG00000079156|Q9BZF3-6|OSBPL6	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.3400268554688	2	541.80128	1081.58801	-0.50518	-0.00027371	0.102	5.5262E-05	-0.40319	-0.00021845	541.8003655569271	33.74	0.29145	33.74	33.533	33.824	0					7	5	2	0	0	0	0.027462	1	1576	1576		42.396	12.078	1	28639	+		7968	17036	6455	6465	9030	9030					0.050476462205324424
ELIHKIKT	8	Unmodified	_ELIHKIKT_					0	0	0			REV__sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1	REV__sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.7650451660156	2	491.30821	980.601866	1.3435	0.00066008	0.4114	0.00020212	1.7549	0.00086221	491.3082719694556	92.321	0.3394	92.321	92.132	92.472	0					12	7	2	0	0	0	0.028476	1	9992	9992		26.693	0	1	367370	+		7969	29395	6456	6466	9031	9031					0.11078923719617251
ELIIFRLVA	9	Unmodified	_ELIIFRLVA_					0	0	0		nc|ENSG00000164253|Q9HAD4-2|WDR41;ENSG00000164253|ENST00000296679|WDR41;ENST00000502528.5_1_5:76728962-76747206:-|nuORF	nc|ENSG00000164253|Q9HAD4-2|WDR41	nc|ENSG00000164253|Q9HAD4-2|WDR41	MULTI-SECPEP	OvCa9_classI_Rep3	3	537.8047485351562	2	537.33951	1072.66447	1.0174	0.0005467	-1.6869	-0.00090644	-0.66949	-0.00035974	537.3385187397712	73.531	0.94317	71.043	70.727	71.67	-2.4873					34	18	2	0	0	0	0.027441	1	3656	3656		55.504	0	1	178040			7970	6437	6457	6467	9032	9032					0.13104069787800654
ELIIKKHE	8	Unmodified	_ELIIKKHE_					0	0	0			REV__ENST00000441055.1_1_X:66594168-66594795:+|nuORF	REV__ENST00000441055.1_1_X:66594168-66594795:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.8212585449219	2	505.305667	1008.59678	-0.21611	-0.0001092	-2.5689	-0.0012981	-2.785	-0.0014073	505.30555902642453	110.05	1.8455	108.91	108.61	110.46	-1.1444					43	35	2	0	0	0	0.028476	1	8071	8071		42.396	8.2236	1	93563	+		7971	25837	6458	6468	9033	9033					0.09282619856992369
ELIKEQLNN	9	Unmodified	_ELIKEQLNN_					0	0	0		tr|A0A7D6VMM6|A0A7D6VMM6_9CLOTRadicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15980PE=4SV=1	tr|A0A7D6VMM6|A0A7D6VMM6_9CLOTRadicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15980PE=4SV=1	tr|A0A7D6VMM6|A0A7D6VMM6_9CLOTRadicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15980PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.8322143554688	2	550.800946	1099.58734	-1.3233	-0.00072885	3.4388	0.0018941	2.1155	0.0011652	550.8022764958547	73.165	0.48351	69.769	69.349	69.833	-3.3961					13	9	2	0	0	0	0.027462	1	5654	5654		37.812	2.6595	1	34263			7972	34663	6459	6469	9034	9034					0.041528067808030755
ELIKHELLS	9	Unmodified	_ELIKHELLS_					0	0	0			REV__nc|ENSG00000154188|Q15389-2|ANGPT1	REV__nc|ENSG00000154188|Q15389-2|ANGPT1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.3574829101562	2	541.316232	1080.61791	-0.028808	-1.5594E-05	-0.46996	-0.0002544	-0.49877	-0.00026999	541.3158092822958	97.625	1.0599	95.246	94.962	96.022	-2.3786					35	20	3	0	0	0	0.027462	1	8621	8621		9.7057	0	1	56849	+		7973	20366	6460	6470	9035	9035					0.08082585165857381
ELIKHELLS	9	Unmodified	_ELIKHELLS_					0	0	0			REV__nc|ENSG00000154188|Q15389-2|ANGPT1	REV__nc|ENSG00000154188|Q15389-2|ANGPT1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	541.316232	1080.61791	-0.19479	-0.00010544	-0.29929	-0.00016201	-0.49408	-0.00026745	541.3158159049436	97.024	1.0099	95.195	94.931	95.941	-1.8286	-0.025509	8.5362E-05	NaN	5.5578	36	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50616	+		7974	20366	6460	6470							0.08082585165857381
ELIKHITLI	9	Unmodified	_ELIKHITLI_					0	0	0			REV__TMEM156|p.R233H|1|0.41|ENSG00000121895|chr4:38988892-38988892|C/T|missense_variant	REV__TMEM156|p.R233H|1|0.41|ENSG00000121895|chr4:38988892-38988892|C/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.7545166015625	2	540.344792	1078.67503	1.5226	0.00082272	1.2714	0.00068702	2.794	0.0015097	540.8490931898558	78.933	0.24574	78.933	78.75	78.996	0					6	5	2	0	0	0	0.027462	1	8020	8020		27.882	4.8398	1	154080	+		7975	29513	6461	6471	9036	9036					0.13884052442244865
ELIKYKVGK	9	Unmodified	_ELIKYKVGK_					0	0	0		ENST00000460046.2_3_17:19839418-19843159:-|nuORF	ENST00000460046.2_3_17:19839418-19843159:-|nuORF	ENST00000460046.2_3_17:19839418-19843159:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.3037719726562	2	539.336967	1076.65938	-0.18785	-0.00010131	0.4685	0.00025268	0.28066	0.00015137	539.3371570126163	69.455	0.32393	69.455	69.228	69.552	0					20	7	3	0	0	0	0.027462	1	6612	6612		14.865	4.5996	1	926450			7976	12146	6462	6472	9037	9037					0.12411765925162399
ELILEYTLC	9	Unmodified	_ELILEYTLC_					0	0	0		ENST00000462785.1_1_2:112526870-112536431:-|nuORF	ENST00000462785.1_1_2:112526870-112536431:-|nuORF	ENST00000462785.1_1_2:112526870-112536431:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.8060913085938	2	548.783376	1095.5522	1.5709	0.00086209	-1.3257	-0.00072751	0.24524	0.00013458	548.7825615040429	111.03	0.71165	111.03	110.8	111.51	0					37	15	3	0	0	0	0.027462	1	12673	12673		23.042	1.0826	1	736340			7977	12211	6463	6473	9038	9038					0.008244279286600431
ELILGIMVGT	10	Unmodified	_ELILGIMVGT_					0	0	0		ENSG00000115841|ENST00000354545|RMDN2	ENSG00000115841|ENST00000354545|RMDN2	ENSG00000115841|ENST00000354545|RMDN2	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3036499023438	2	523.301736	1044.58892	-0.69596	-0.0003642	4.2173	0.0022069	3.5214	0.0018427	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.7759	1	13835	13835		21.96	1.9631	1	130240			7978	3132	6464	6474	9039	9039					0.06840724545236299
ELILHNPVT	9	Unmodified	_ELILHNPVT_					0	0	0		ENST00000446987.5_1_7:44605603-44612175:-|nuORF;DDX56|p.L390Tfs*12|1|0.04|ENSG00000136271|chr7:44569860-44569861|-/T|frameshift_variant;nc|ENSG00000136271|Q9NY93-2|DDX56;ENSG00000136271|ENST00000258772|DDX56	ENST00000446987.5_1_7:44605603-44612175:-|nuORF	ENST00000446987.5_1_7:44605603-44612175:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.2925415039062	2	518.295299	1034.57605	0.332	0.00017207	-0.90361	-0.00046833	-0.57161	-0.00029626	518.2945737761465	109.38	0.59388	109.21	109.02	109.61	-0.17237					16	11	2	0	0	0	0.027461	1	10303	10303		49.442	17.912	1	22674			7979	723	6465	6475	9040	9040					0.060140294773418645
ELILKLPVI	9	Unmodified	_ELILKLPVI_					0	0	0		EHD2|p.Q330E|1|0.06|ENSG00000024422|chr19:47736441-47736441|C/G|missense_variant	EHD2|p.Q330E|1|0.06|ENSG00000024422|chr19:47736441-47736441|C/G|missense_variant	EHD2|p.Q330E|1|0.06|ENSG00000024422|chr19:47736441-47736441|C/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3462524414062	2	519.352086	1036.68962	2.1474	0.0011152	-2.5619	-0.0013305	-0.4145	-0.00021527	519.3504537960047	130.21	1.0821	128.74	128.46	129.55	-1.4779					35	21	2	0	0	0	0.027462	1	12585	12585		47.916	0	1	45367			7980	784	6466	6476	9041	9041					0.1727412459038078
ELILMLIL	8	Unmodified	_ELILMLIL_					0	0	0			REV__ENST00000467062.5_1_9:15459769-15459898:+|nuORF	REV__ENST00000467062.5_1_9:15459769-15459898:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.7943115234375	2	479.30629	956.598026	0.49665	0.00023805	2.739	0.0013128	3.2356	0.0015509	479.30744914769076	113.13	0.59386	111.68	111.46	112.05	-1.4461					17	11	2	0	0	0	0.028476	1	10492	10492		21.702	0	1	38115	+		7981	26192	6467	6477	9042	9042					0.11799117901557565
ELILTFYFLQL	11	Unmodified	_ELILTFYFLQL_					0	0	0		ENST00000562299.1_1_16:55612978-55617007:+|nuORF	ENST00000562299.1_1_16:55612978-55617007:+|nuORF	ENST00000562299.1_1_16:55612978-55617007:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.2486572265625	3	467.26724	1398.77989	0.33553	0.00015678	-1.8712	-0.00087436	-1.5357	-0.00071758	467.26585785283515	57.941	0.37985	57.941	57.732	58.112	0					11	8	2	0	0	0	0.025995	1	4877	4877		23.378	0	1	299080			7982	13769	6468	6478	9043	9043					0.09645129128148255
ELINILILL	9	Unmodified	_ELINILILL_					0	0	0		ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	MULTI-MSMS	OvCa9_classI_Rep3	3	527.349609375	2	527.349543	1052.68453	-1.4201	-0.00074888	2.2078	0.0011643	0.78775	0.00041542	527.3505497041667	101.47	2.2998	99.862	99.344	101.64	-1.6053					125	43	4	0	0	0	0.50149	1	6968	6968		42.396	5.237	1	388450			7983	5345	6469	6479	9044	9044					0.16029820727771948
ELINISKKP	9	Unmodified	_ELINISKKP_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.28173828125	2	521.318774	1040.623	1.5066	0.00078543	1.8256	0.00095173	3.3322	0.0017372	521.319642738402	91.404	0.36951	91.404	91.213	91.582	0					11	8	2	0	0	0	0.027462	1	9833	9833		47.657	6.2307	1	654590			7984	7923	6470	6480	9045	9045					0.10430889028475576
ELINISKKP	9	Unmodified	_ELINISKKP_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	521.318774	1040.623	-1.1516	-0.00060037	1.4998	0.00078187	0.34816	0.0001815	521.3190195985538	93.442	0.85706	91.481	91.128	91.986	-1.9617	0.038361	-0.00027878	NaN	31.53	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49597			7985	7923	6470	6480							0.10430889028475576
ELIPKTFNK	9	Unmodified	_ELIPKTFNK_					0	0	0			REV__tr|A0A7D6VNB7|A0A7D6VNB7_9CLOTYggTfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14640PE=4SV=1	REV__tr|A0A7D6VNB7|A0A7D6VNB7_9CLOTYggTfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14640PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.3175659179688	2	545.318774	1088.623	-0.51372	-0.00028014	-3.2363	-0.0017648	-3.75	-0.002045	545.3169196404446	142.63	4.7541	141.19	139.73	144.49	-1.4427					172	91	2	0	0	0	0.70177	1	14133	14133		17.365	0.89182	1	155190	+		7986	31167	6471	6481	9046	9046					0.08222889028456848
ELIPLAGALD	10	Unmodified	_ELIPLAGALD_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.32452392578125	2	506.289682	1010.56481	-0.39362	-0.00019929	1.9104	0.00096722	1.5168	0.00076793	506.29078927408653	64.354	0.70456	64.354	64.17	64.875	0					28	16	2	0	0	0	0.026849	1	5906	5906		32.812	14.488	1	608570	+		7987	18424	6472	6482	9047	9047					0.059952073831937014
ELIPYVMD	8	Unmodified	_ELIPYVMD_					0	0	0		tr|A0A553SJQ3|A0A553SJQ3_NIACI1,4-alpha-glucanbranchingenzymeGlgBOS=NialliacirculansOX=1397GN=glgBPE=3SV=1	tr|A0A553SJQ3|A0A553SJQ3_NIACI1,4-alpha-glucanbranchingenzymeGlgBOS=NialliacirculansOX=1397GN=glgBPE=3SV=1	tr|A0A553SJQ3|A0A553SJQ3_NIACI1,4-alpha-glucanbranchingenzymeGlgBOS=NialliacirculansOX=1397GN=glgBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.24932861328125	2	490.243886	978.47322	-0.64924	-0.00031828	3.9337	0.0019285	3.2845	0.0016102	490.2456868081462	55.086	0.55265	55.086	54.848	55.401	0					19	12	2	0	0	0	0.028476	1	4483	4483		44.531	0	1	336260			7988	33529	6473	6483	9048	9048					-0.016877993056368723
ELIQARRH	8	Unmodified	_ELIQARRH_					0	0	0			REV__ENSG00000158859|ENST00000367996|ADAMTS4	REV__ENSG00000158859|ENST00000367996|ADAMTS4	MULTI-MSMS	OvCa9_classI_Rep2	2	511.7966613769531	2	511.796332	1021.57811	-0.62141	-0.00031803	0.39226	0.00020076	-0.22915	-0.00011728	511.7964198016226	39.51	1.1416	36.8	36.459	37.601	-2.7097					55	22	3	0	0	0	0.66704	1	1955	1955		50.025	9.4519	1	203800	+		7989	20586	6474	6484	9049	9049					0.06818503005797538
ELIQQLTH	8	Unmodified	_ELIQQLTH_					0	0	0		ENSG00000143669|ENST00000389793|LYST;ENST00000473037.5_1_1:235826242-235897989:-|nuORF	ENSG00000143669|ENST00000389793|LYST	ENSG00000143669|ENST00000389793|LYST	MULTI-SECPEP	OvCa9_classI_Rep3	3	491.8001708984375	2	491.271824	980.529095	0.13264	6.5161E-05	0.042079	2.0672E-05	0.17472	8.5833E-05	491.27179867049716	106.24	1.2603	104.95	104.62	105.88	-1.2873					54	24	3	0	0	0	0.028476	1	7594	7594		16.473	0	1	137650			7990	5084	6475	6485	9050	9050					0.03805169926170038
ELIRRIDD	8	Unmodified	_ELIRRIDD_					0	0	0			REV__nc|ENSG00000179603|O00222-2|GRM8	REV__nc|ENSG00000179603|O00222-2|GRM8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.8047485351562	2	515.288005	1028.56146	-1.1779	-0.00060696	2.4232	0.0012486	1.2453	0.00064169	515.2894136941361	54.815	0.66782	51.567	51.336	52.004	-3.2474					16	12	2	0	0	0	0.028476	1	3465	3465		31.955	2.1133	1	38453	+		7991	22131	6476	6486	9051	9051					0.04831957329179204
ELIRRIDD	8	Unmodified	_ELIRRIDD_					0	0	0			REV__nc|ENSG00000179603|O00222-2|GRM8	REV__nc|ENSG00000179603|O00222-2|GRM8	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.288005	1028.56146	-0.96212	-0.00049577	2.3335	0.0012024	1.3714	0.00070665	515.2891405500129	54.537	0.49823	51.723	51.473	51.972	-2.8139	0.077867	-4.5404E-05	NaN	40.573	10	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11185	+		7992	22131	6476	6486							0.04831957329179204
ELISDQISD	9	Unmodified	_ELISDQISD_					0	0	0		ENST00000494673.1_1_6:31243358-31244615:+|nuORF	ENST00000494673.1_1_6:31243358-31244615:+|nuORF	ENST00000494673.1_1_6:31243358-31244615:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.28399658203125	2	510.248212	1018.48187	2.3644	0.0012065	3.1746	0.0016198	5.539	0.0028263	510.24913090497256	76.242	0.24836	76.242	76.076	76.324	0					6	5	2	0	0	0	0.027441	1	7614	7614		49.442	0	1	64752			7993	12760	6477	6487	9052	9052					-0.02663154135473178
ELISERIYLLI	11	Unmodified	_ELISERIYLLI_					0	0	0			REV__ENST00000416749.1_3_6:27326520-27327366:-|nuORF	REV__ENST00000416749.1_3_6:27326520-27327366:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	454.7524108886719	3	454.606144	1360.7966	0.048285	2.195E-05	-2.1627	-0.00098316	-2.1144	-0.00096121	454.6050210687913	70.596	0.62983	70.596	70.21	70.839	0					40	15	4	0	0	0	0.026132	1	6740	6740		10.998	0	1	1045900	+		7994	25553	6478	6488	9053	9053					0.13063630014084993
ELISGKDQP	9	Unmodified	_ELISGKDQP_					0	0	0		ENSG00000171428|ENST00000307719|NAT1;ENSG00000156006|ENST00000286479|NAT2	ENSG00000171428|ENST00000307719|NAT1	ENSG00000171428|ENST00000307719|NAT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.248779296875	2	493.761289	985.508025	2.441	0.0012053	0.33358	0.00016471	2.7745	0.00137	493.76107230984127	94.122	0.46552	94.122	93.841	94.306	0					25	10	4	0	0	0	0.027461	1	10238	10238		32.812	1.2335	1	387020			7995	7194	6479	6489	9054	9054					0.014691598266722394
ELISVIILN	9	Unmodified	_ELISVIILN_					0	0	0		L1PB4_dup1466|chr4:19614553-19617282:+|1.566952962030771|0.0066926762288261|7.87|427.0|92|1|anti-sense	L1PB4_dup1466|chr4:19614553-19617282:+|1.566952962030771|0.0066926762288261|7.87|427.0|92|1|anti-sense	L1PB4_dup1466|chr4:19614553-19617282:+|1.566952962030771|0.0066926762288261|7.87|427.0|92|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.2906188964844	2	507.3157	1012.61685	-0.3783	-0.00019192	0.40651	0.00020623	0.028215	1.4314E-05	507.31547486366776	116.62	0.46553	115.26	115.04	115.51	-1.3645					11	8	2	0	0	0	0.027426	1	10899	10899		76.774	5.4784	1	9958.4			7996	14790	6480	6490	9055	9055					0.11104370796965668
ELIVESSLSN	10	Unmodified	_ELIVESSLSN_					0	0	0			REV__nc|ENSG00000150093|P05556-2|ITGB1	REV__nc|ENSG00000150093|P05556-2|ITGB1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.7913208007812	2	545.784961	1089.55537	-1.3593	-0.00074189	1.1008	0.00060082	-0.25847	-0.00014107	545.7848375270808	54.435	0.30658	51.187	51.03	51.336	-3.2474					7	5	2	0	0	0	0.026891	1	3357	3357		31.53	0	1	9662.2	+		7997	20184	6481	6491	9056	9056					0.0141739430700909
ELIVKHKFTK	10	Unmodified	_ELIVKHKFTK_					0	0	0		C9orf3-HIATL1|1|fusion;C9orf3-HIATL1|2|fusion;nc|ENSG00000148120|Q8N6M6-4|AOPEP;nc|ENSG00000148120|Q8N6M6-2|AOPEP;ENSG00000148120|ENST00000375315|AOPEP;ENST00000468164.1_1_9:97818730-97844994:+|nuORF;ENST00000463372.5_1_9:97767418-97844994:+|nuORF;CCDC149-C9orf3|1|fusion;CCDC149-C9orf3|2|fusion	C9orf3-HIATL1|1|fusion	C9orf3-HIATL1|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	621.8859252929688	2	621.882073	1241.74959	1.0042	0.00062452	1.0879	0.00067652	2.0921	0.001301	621.8825941276459	131	0.9476	131	130.68	131.62	0					46	19	4	0	0	0	0.61634	1	15235	15235		40.058	0	1	699820			7998	169	6482	6492	9057	9057					0.13838815253598113
ELIVLKRA	8	Unmodified	_ELIVLKRA_					0	0	0			REV__chr19:16076697-16088027|114|11.31|0.3|5.22|+|0|TPM4,TPM4|1;REV__ENST00000604975.1_1_9:35685264-35689844:-|nuORF	REV__ENST00000604975.1_1_9:35685264-35689844:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	471.3089294433594	2	471.310752	940.606951	-0.32194	-0.00015174	-3.3898	-0.0015976	-3.7117	-0.0017494	471.30924086054455	24.361	1.905	24.361	24.137	26.042	0					86	37	5	0	0	0	0.74971	1	502	502		26.796	0	1	6134900	+	+	7999	15967;16208	6483	6493	9058	9058					0.13427227582235446
ELIYYLYL	8	Unmodified	_ELIYYLYL_					0	0	0		ENST00000366645.1_1_1:231471248-231471314:-|nuORF	ENST00000366645.1_1_1:231471248-231471314:-|nuORF	ENST00000366645.1_1_1:231471248-231471314:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.8162841796875	2	545.296976	1088.5794	-0.56496	-0.00030807	-3.3591	-0.0018317	-3.9241	-0.0021398	545.2950630029103	121.78	0.87483	120.44	120.25	121.13	-1.3479					20	16	2	0	0	0	0.028476	1	11479	11479		44.531	6.7195	1	36486			8000	10825	6484	6494	9059	9059					0.038652795313282695
ELKALKMIS	9	Unmodified	_ELKALKMIS_					0	0	0			REV__tr|A0A553SMM5|A0A553SMM5_NIACIMBLfoldmetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_22815PE=4SV=1	REV__tr|A0A553SMM5|A0A553SMM5_NIACIMBLfoldmetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_22815PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.2779541015625	2	516.809728	1031.6049	1.6238	0.00083919	0.4151	0.00021453	2.0389	0.0010537	516.8097687397008	105.99	0.43697	105.99	105.79	106.23	0					18	9	2	0	0	0	0.02744	1	11923	11923		44.377	5.1244	1	271940	+		8001	30349	6485	6495	9060	9060					0.0903643078213463
ELKAPQNSGP	10	Unmodified	_ELKAPQNSGP_					0	0	0		ENSG00000261949|ENST00000610896|GFY	ENSG00000261949|ENST00000610896|GFY	ENSG00000261949|ENST00000610896|GFY	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.3004150390625	2	520.772188	1039.52982	0.67551	0.00035178	2.4422	0.0012719	3.1177	0.0016236	520.7733447722325	81.19	1.2122	79.541	78.915	80.127	-1.6485					55	23	4	0	0	0	0.026494	1	6931	6931		87.696	46.918	1	108720			8002	9506	6486	6496	9061	9061					0.01163964575243881
ELKARISASA	10	Unmodified	_ELKARISASA_					0	0	0		ENSG00000110244|ENST00000357780|APOA4	ENSG00000110244|ENST00000357780|APOA4	ENSG00000110244|ENST00000357780|APOA4	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3034057617188	2	523.303655	1044.59276	-2.1228	-0.0011108	2.0352	0.001065	-0.087543	-4.5811E-05	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.58067	1	11420	11420		44.377	7.9304	1	183010			8003	2764	6487	6497	9062	9062					0.07224530363282611
ELKASNILPK	10	Unmodified	_ELKASNILPK_					0	0	0		tr|A0A553SSB2|A0A553SSB2_NIACIDUF4317familyproteinOS=NialliacirculansOX=1397GN=CEQ21_02585PE=4SV=1	tr|A0A553SSB2|A0A553SSB2_NIACIDUF4317familyproteinOS=NialliacirculansOX=1397GN=CEQ21_02585PE=4SV=1	tr|A0A553SSB2|A0A553SSB2_NIACIDUF4317familyproteinOS=NialliacirculansOX=1397GN=CEQ21_02585PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	557.310791015625	2	556.837331	1111.66011	0.35127	0.0001956	-0.61401	-0.0003419	-0.26274	-0.0001463	556.8370181755322	113.56	1.0857	112.48	112.2	113.28	-1.0753					58	20	4	0	0	0	0.026464	1	8353	8353		96.034	18.716	1	141400			8004	34353	6488	6498	9063	9063					0.108745605742115
ELKEGAQALL	10	Unmodified	_ELKEGAQALL_					0	0	0			REV__ENST00000503013.2_1_4:114891653-114899990:-|nuORF	REV__ENST00000503013.2_1_4:114891653-114899990:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	536.30615234375	2	536.305864	1070.59717	0.097858	5.2482E-05	-0.28269	-0.00015161	-0.18484	-9.9128E-05	536.3055985521422	72.879	0.98697	72.879	72.492	73.479	0					56	24	4	0	0	0	0.028355	1	7111	7111		138.06	1.7943	1	6142500	+		8005	22197	6489	6499	9064	9064					0.06469994786198185
ELKEGAQALL	10	Unmodified	_ELKEGAQALL_					0	0	0			REV__ENST00000503013.2_1_4:114891653-114899990:-|nuORF	REV__ENST00000503013.2_1_4:114891653-114899990:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	536.305864	1070.59717	-1.3815	-0.00074089	0.56138	0.00030107	-0.82009	-0.00043982	536.3059972333659	74.876	1.4975	72.905	72.376	73.874	-1.9711	0.037625	0.00054955	NaN	138.06	62	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170120	+		8006	22197	6489	6499							0.06469994786198185
ELKELGFQN	9	Unmodified	_ELKELGFQN_					0	0	0		ENST00000334286.7_1_13:78477430-78477487:-|nuORF	ENST00000334286.7_1_13:78477430-78477487:-|nuORF	ENST00000334286.7_1_13:78477430-78477487:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.2998046875	2	539.282389	1076.55022	-0.69101	-0.00037265	0.34308	0.00018502	-0.34793	-0.00018763	539.2825572178722	78.298	0.90139	75.481	75.165	76.067	-2.8165					33	18	2	0	0	0	0.027433	1	6314	6314		37.812	0	1	214700			8007	10477	6490	6500	9065	9065					0.015011352350711604
ELKESEQSVG	10	Unmodified	_ELKESEQSVG_					0	0	0			REV__ENST00000464547.5_1_1:212792437-212792894:+|nuORF	REV__ENST00000464547.5_1_1:212792437-212792894:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.8055419921875	2	553.272218	1104.52988	-0.98166	-0.00054312	-3.7656	-0.0020834	-4.7473	-0.0026265	553.2699520515381	27.366	0.24985	27.366	27.241	27.491	0					6	4	2	0	0	0	0.026681	1	786	786		44.377	0	1	44685	+		8008	26152	6491	6501	9066	9066					-0.018200802154069606
ELKEVEAR	8	Unmodified	_ELKEVEAR_					0	0	0			REV__ENSG00000116544|ENST00000373347|DLGAP3	REV__ENSG00000116544|ENST00000373347|DLGAP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.2572021484375	2	487.269281	972.52401	0.27546	0.00013422	0.44706	0.00021784	0.72252	0.00035206	487.26906357061	45.396	0.33865	45.396	45.202	45.54	0					10	7	2	0	0	0	0.028476	1	3133	3133		40.778	1.5253	1	67107	+		8009	18306	6492	6502	9067	9067					0.03664866063570571
ELKEVIKEL	9	Unmodified	_ELKEVIKEL_					0	0	0			REV__tr|A0A553SKX4|A0A553SKX4_NIACIExodeoxyribonuclease7smallsubunitOS=NialliacirculansOX=1397GN=xseBPE=3SV=1	REV__tr|A0A553SKX4|A0A553SKX4_NIACIExodeoxyribonuclease7smallsubunitOS=NialliacirculansOX=1397GN=xseBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.2955932617188	2	550.831714	1099.64888	-0.88103	-0.0004853	0.27537	0.00015168	-0.60566	-0.00033362	550.8318371082638	81.326	1.0668	78.616	78.347	79.413	-2.7106					46	21	3	0	0	0	0.027389	1	6670	6670		138.06	8.6411	1	190740	+		8010	30161	6493	6503	9068	9068					0.10303738480092761
ELKEVIKEL	9	Unmodified	_ELKEVIKEL_					0	0	0			REV__tr|A0A553SKX4|A0A553SKX4_NIACIExodeoxyribonuclease7smallsubunitOS=NialliacirculansOX=1397GN=xseBPE=3SV=1	REV__tr|A0A553SKX4|A0A553SKX4_NIACIExodeoxyribonuclease7smallsubunitOS=NialliacirculansOX=1397GN=xseBPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	550.831714	1099.64888	0.89423	0.00049257	-1.491	-0.00082131	-0.59681	-0.00032874	550.830865616636	80.472	1.458	78.776	78.519	79.977	-1.6951	0.085579	-0.0015395	NaN	138.06	63	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129170	+		8011	30161	6493	6503							0.10303738480092761
ELKEVIKEL	9	Unmodified	_ELKEVIKEL_					0	0	0			REV__tr|A0A553SKX4|A0A553SKX4_NIACIExodeoxyribonuclease7smallsubunitOS=NialliacirculansOX=1397GN=xseBPE=3SV=1	REV__tr|A0A553SKX4|A0A553SKX4_NIACIExodeoxyribonuclease7smallsubunitOS=NialliacirculansOX=1397GN=xseBPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	550.831714	1099.64888	-0.81429	-0.00044854	0.19611	0.00010802	-0.61818	-0.00034052	550.831793321698	81.003	1.3713	78.68	78.337	79.708	-2.3226	-0.010538	0.00031915	NaN	138.06	60	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173390	+		8012	30161	6493	6503							0.10303738480092761
ELKFLEETK	9	Unmodified	_ELKFLEETK_					0	0	0			REV__tr|A0A7D6VZ67|A0A7D6VZ67_9CLOTPenicillin-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18455PE=3SV=1	REV__tr|A0A7D6VZ67|A0A7D6VZ67_9CLOTPenicillin-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18455PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2916259765625	2	568.813522	1135.61249	-0.15327	-8.7183E-05	0.71154	0.00040473	0.55827	0.00031755	568.8142169111493	40.86	0.57402	40.86	40.666	41.24	0					20	12	2	0	0	0	0.027462	1	2514	2514		30.318	13.845	1	264860	+		8013	31832	6494	6504	9069	9069					0.05010861583377846
ELKGAPLSGF	10	Unmodified	_ELKGAPLSGF_					0	0	0			REV__ENST00000361549.2_1_12:108912031-108913249:+|nuORF	REV__ENST00000361549.2_1_12:108912031-108913249:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.7718505859375	2	509.782025	1017.5495	1.0652	0.00054304	0.69265	0.0003531	1.7579	0.00089614	509.7831999569217	139.37	0.28857	139.37	139.22	139.51	0					6	5	2	0	0	0	0.027145	1	16273	16273		8.2351	0	1	15093	+		8014	24855	6495	6505	9070	9070					0.04142340586008686
ELKGETRGEG	10	Unmodified	_ELKGETRGEG_					0	0	0		ENST00000587406.5_1_19:19230741-19232328:-|nuORF	ENST00000587406.5_1_19:19230741-19232328:-|nuORF	ENST00000587406.5_1_19:19230741-19232328:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.7986450195312	2	538.272552	1074.53055	1.0391	0.00055931	-1.7141	-0.00092266	-0.67503	-0.00036335	538.2707312633611	156.48	1.0066	156.48	155.99	157	0					33	19	3	0	0	0	0.026906	1	18295	18295		27.047	0	1	68350			8015	14062	6496	6506	9071	9071					-0.0037324077570701775
ELKGIYKD	8	Unmodified	_ELKGIYKD_					0	0	0		ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;ENST00000521903.5_1_8:124361561-124413087:-|nuORF;nc|ENSG00000156802|Q6PL18-2|ATAD2	ENSG00000156802|ENST00000287394|ATAD2	ENSG00000156802|ENST00000287394|ATAD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.2806091308594	2	483.26875	964.522947	2.886	0.0013947	0.64979	0.00031403	3.5358	0.0017087	483.2689177229119	90.089	0.25181	90.089	89.977	90.228	0					6	5	2	0	0	0	0.028476	1	9643	9643		35.618	5.1146	1	135910			8016	5857	6497	6507	9072	9072					0.03926651694666816
ELKHALSDKA	10	Unmodified	_ELKHALSDKA_					0	0	0		ENSG00000139287|ENST00000333850|TPH2;nc|ENSG00000139287|Q8IWU9-2|TPH2	ENSG00000139287|ENST00000333850|TPH2	ENSG00000139287|ENST00000333850|TPH2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	556.3335571289062	2	556.308938	1110.60332	-0.1994	-0.00011093	-1.3365	-0.00074349	-1.5359	-0.00085442	556.3093528571492	70.841	0.91505	67.385	66.812	67.727	-3.4563					39	18	3	0	0	0	0.027145	1	5321	5321		18.262	0	1	63411			8017	4762	6498	6508	9073	9073					0.0524451301771478
ELKIYQREP	9	Unmodified	_ELKIYQREP_					0	0	0			REV__ENST00000426627.1_1_13:88543904-88544189:-|nuORF	REV__ENST00000426627.1_1_13:88543904-88544189:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.8369750976562	2	588.324588	1174.63462	1.3791	0.00081135	4.1552	0.0024446	5.5343	0.003256	588.3274930509609	147.54	0.77353	147.54	147.26	148.03	0					29	15	3	0	0	0	0.027447	1	17235	17235		39.253	3.6345	1	89315	+		8018	25667	6499	6509	9074	9074					0.05429086051822196
ELKKAGRRYG	10	Unmodified	_ELKKAGRRYG_					0	0	0			REV__BRCA1|p.N1265Kfs*4|1|0.89|ENSG00000012048|chr17:43091736-43091737|-/TT|frameshift_variant	REV__BRCA1|p.N1265Kfs*4|1|0.89|ENSG00000012048|chr17:43091736-43091737|-/TT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3422241210938	2	589.343646	1176.67274	-3.0463	-0.0017953	1.897	0.001118	-1.1493	-0.00067734	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.74374	1	14878	14878		25.574	1.3713	1	272220	+		8019	15709	6500	6510	9075	9075					0.09147016757151505
ELKKAGRRYG	10	Unmodified	_ELKKAGRRYG_					0	0	0			REV__BRCA1|p.N1265Kfs*4|1|0.89|ENSG00000012048|chr17:43091736-43091737|-/TT|frameshift_variant	REV__BRCA1|p.N1265Kfs*4|1|0.89|ENSG00000012048|chr17:43091736-43091737|-/TT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3431396484375	2	589.343646	1176.67274	-4.3129	-0.0025418	3.0093	0.0017735	-1.3036	-0.00076827	589.3453728975387	144.79	3.9151	143.81	141.71	145.63	-0.97299					242	78	5	0	0	0	0.79213	1	12027	12027		19.997	0.89325	1	192050	+		8020	15709	6500	6510	9076	9076					0.09147016757151505
ELKKIQTKY	9	Unmodified	_ELKKIQTKY_					0	0	0		tr|A0A7D6VQW4|A0A7D6VQW4_9CLOTMembraneproteininsertaseYidCOS=ClostridiumintestinaleOX=36845GN=yidCPE=3SV=1	tr|A0A7D6VQW4|A0A7D6VQW4_9CLOTMembraneproteininsertaseYidCOS=ClostridiumintestinaleOX=36845GN=yidCPE=3SV=1	tr|A0A7D6VQW4|A0A7D6VQW4_9CLOTMembraneproteininsertaseYidCOS=ClostridiumintestinaleOX=36845GN=yidCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8436889648438	2	575.845156	1149.67576	-2.8608	-0.0016474	-0.58729	-0.00033819	-3.4481	-0.0019856	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.65371	1	14672	14672		25.574	0	1	356230			8021	34874	6501	6511	9077	9077					0.10690847091291289
ELKKLKLV	8	Unmodified	_ELKKLKLV_					0	0	0		tr|A0A553SFF1|A0A553SFF1_NIACIGluconokinaseOS=NialliacirculansOX=1397GN=gntKPE=3SV=1	tr|A0A553SFF1|A0A553SFF1_NIACIGluconokinaseOS=NialliacirculansOX=1397GN=gntKPE=3SV=1	tr|A0A553SFF1|A0A553SFF1_NIACIGluconokinaseOS=NialliacirculansOX=1397GN=gntKPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.2919616699219	2	485.836603	969.658653	0.49397	0.00023999	-1.2843	-0.00062398	-0.79037	-0.00038399	485.8362166570482	81.867	0.51933	80.218	79.971	80.491	-1.6485					13	9	2	0	0	0	0.028476	1	6984	6984		33.516	0	1	15221			8022	33032	6502	6512	9078	9078					0.1726097127614139
ELKKMKKTT	9	Unmodified	_ELKKMKKTT_					0	0	0			REV__ENSG00000164440|ENST00000358430|TXLNB	REV__ENSG00000164440|ENST00000358430|TXLNB	MULTI-MSMS	OvCa9_classI_Rep3	3	553.830078125	2	553.833734	1105.65292	-3.0788	-0.0017052	-3.6684	-0.0020317	-6.7472	-0.0037369	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.64427	1	11999	11999		26.693	2.4902	1	308210	+		8023	20989	6503	6513	9079	9079					0.10431504702160055
ELKKRRHKREL	11	Unmodified	_ELKKRRHKREL_					0	0	0			REV__nc|ENSG00000179119|Q68D10-3|SPTY2D1	REV__nc|ENSG00000179119|Q68D10-3|SPTY2D1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3091735839844	3	498.310947	1491.91101	-5.113	-0.0025478	2.9879	0.0014889	-2.125	-0.0010589	498.3123780141879	160.35	1.8473	160.12	159.68	161.53	-0.22697					120	37	4	0	0	0	0.72555	3	16424	16322;16328;16424		8.4073	1.7476	1	150420	+		8024	22103	6504	6514	9080;9081;9082	9082					0.18473377339387298
ELKLDVYVNQ	10	Unmodified	_ELKLDVYVNQ_					0	0	0			REV__tr|A0A7D6ZG62|A0A7D6ZG62_9CLOTYbbR-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20995PE=4SV=1	REV__tr|A0A7D6ZG62|A0A7D6ZG62_9CLOTYbbR-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20995PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	407.57977294921875	3	407.555561	1219.64485	1.0312	0.00042026	-0.94906	-0.00038679	0.082117	3.3467E-05	407.5549511745846	58.453	0.34758	55.061	54.902	55.249	-3.392					10	6	2	0	0	0	0.026666	1	3871	3871		29.551	0	1	32543	+		8025	31991	6505	6515	9083	9083					0.04381648986395703
ELKLKDQGL	9	Unmodified	_ELKLKDQGL_					0	0	0			REV__ENST00000560090.2_1_15:77272258-77272387:-|nuORF	REV__ENST00000560090.2_1_15:77272258-77272387:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.2831420898438	2	522.308406	1042.60226	0.77176	0.0004031	0.66961	0.00034974	1.4414	0.00075284	522.3087210801356	103.16	0.79565	103.16	102.93	103.73	0					47	18	4	0	0	0	0.027426	1	11551	11551		31.53	0	1	1687900	+		8026	27609	6506	6516	9084	9084					0.08266298648823067
ELKLKHGSLTK	11	Unmodified	_ELKLKHGSLTK_					0	0	0		tr|A0A553SNG6|A0A553SNG6_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24330PE=4SV=1	tr|A0A553SNG6|A0A553SNG6_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24330PE=4SV=1	tr|A0A553SNG6|A0A553SNG6_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24330PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	627.3856201171875	2	627.382437	1252.75032	0.45246	0.00028386	-0.20501	-0.00012862	0.24745	0.00015525	627.381941059398	164.3	2.2705	164.3	163.48	165.75	0					225	84	3	0	0	0	0.60323	3	19208	19158;19208;19218		44.377	14.059	1	178050			8027	33927	6507	6517	9085;9086;9087	9086					0.1340560990265658
ELKLTPHLK	9	Unmodified	_ELKLTPHLK_					0	0	0			REV__nc|ENSG00000196689|Q8NER1-3|TRPV1	REV__nc|ENSG00000196689|Q8NER1-3|TRPV1	MULTI-MSMS	OvCa9_classI_Rep3	3	539.8322143554688	2	539.834591	1077.65463	-3.6599	-0.0019758	-0.34525	-0.00018638	-4.0052	-0.0021621	539.8343147097894	149.81	1.4119	148.86	148.45	149.86	-0.9512					78	27	4	0	0	0	0.62352	1	12699	12699		29.15	0	1	160650	+		8028	27761	6508	6518	9088	9088					0.11890881782414908
ELKMKTRPK	9	Unmodified	_ELKMKTRPK_					0	0	0			REV__ENST00000381077.9_1_X:6968071-6968173:-|nuORF	REV__ENST00000381077.9_1_X:6968071-6968173:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	566.2855834960938	2	565.839351	1129.66415	0.36923	0.00020893	-1.7325	-0.00098034	-1.3633	-0.00077141	565.838165277469	91.858	0.80714	89.315	88.862	89.669	-2.5425					23	15	2	0	0	0	0.027462	1	7936	7936		17.468	0	1	17921	+		8029	25189	6509	6519	9089	9089					0.10450326796308218
ELKMSLLKQ	9	Unmodified	_ELKMSLLKQ_					0	0	0		chr15:97429889-97431791|214|19.5|0.3|6.03|+|1|LINC02253,LINC02253|2	chr15:97429889-97431791|214|19.5|0.3|6.03|+|1|LINC02253,LINC02253|2	chr15:97429889-97431791|214|19.5|0.3|6.03|+|1|LINC02253,LINC02253|2	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3162231445312	2	545.32046	1088.62637	-2.8527	-0.0015556	-4.0579	-0.0022129	-6.9106	-0.0037685	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.60342	1	11981	11981		31.53	1.0262	1	337600			8030	366	6510	6520	9090	9090					0.08559815810826876
ELKNPPVLPL	10	Unmodified	_ELKNPPVLPL_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OvCa9_classI_Rep3	3	560.340087890625	2	560.342249	1118.66995	-7.144	-0.0040031	3.6168	0.0020266	-3.5273	-0.0019765	560.3441648343594	161.4	2.0053	160.03	159.58	161.59	-1.3692					105	41	5	0	0	0	0.67931	3	14032	14026;14032;14050		32.812	4.733	1	475740	+		8031	16701	6511	6521	9091;9092;9093	9092					0.11535748579603933
ELKNPSFVI	9	Unmodified	_ELKNPSFVI_					0	0	0			REV__nc|ENSG00000166006|Q96PR1-4|KCNC2	REV__nc|ENSG00000166006|Q96PR1-4|KCNC2	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.8158569335938	2	523.797675	1045.5808	-0.11653	-6.1038E-05	2.8634	0.0014998	2.7469	0.0014388	523.7974218548284	122.53	0.64185	122.31	121.97	122.61	-0.21803					18	12	3	0	0	0	0.027447	1	11842	11842		56.721	3.3696	1	12265	+		8032	21149	6512	6522	9094	9094					0.05982913620096042
ELKPERLQPR	10	Unmodified	_ELKPERLQPR_					0	0	0		ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-3|SPTBN4	ENSG00000160460|ENST00000598249|SPTBN4	ENSG00000160460|ENST00000598249|SPTBN4	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3688354492188	2	633.369861	1264.72517	-4.1446	-0.0026251	2.9938	0.0018962	-1.1508	-0.00072888	633.3716506579397	149.94	3.0119	148.99	147.85	150.86	-0.9512					218	59	5	0	0	0	0.72142	1	12698	12698		28.081	7.2443	1	281260			8033	6068	6513	6523	9095	9095					0.1033955510006308
ELKPLLLLV	9	Unmodified	_ELKPLLLLV_					0	0	0			REV__chr7:64336982-64337779|365|10.25|0.51|4.33|+|1|ZNF736,None|1	REV__chr7:64336982-64337779|365|10.25|0.51|4.33|+|1|ZNF736,None|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.3470458984375	2	519.352086	1036.68962	1.3764	0.00071484	-1.7567	-0.00091234	-0.38027	-0.0001975	519.3510668158169	128.94	0.8909	128.72	128.43	129.32	-0.22697					27	17	2	0	0	0	0.027441	1	12669	12669		58.782	12.81	1	42341	+		8034	16098	6514	6524	9096	9096					0.1727412459038078
ELKPQPMIKKA	11	Unmodified	_ELKPQPMIKKA_					0	0	0		nc|ENSG00000108924|Q16534-2|HLF;ENST00000570962.1_1_17:53345105-53398237:+|nuORF;ENSG00000108924|ENST00000226067|HLF	nc|ENSG00000108924|Q16534-2|HLF	nc|ENSG00000108924|Q16534-2|HLF	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.88232421875	2	641.881216	1281.74788	-2.5182	-0.0016164	4.166	0.002674	1.6478	0.0010577	641.8839546837315	150.47	2.9704	149.03	147.78	150.75	-1.4344					235	64	4	0	0	0	0.72479	1	14978	14978		18.262	1.5447	1	344900			8035	2686	6515	6525	9097	9097					0.11827438173349947
ELKQAFRE	8	Unmodified	_ELKQAFRE_					0	0	0		nc|ENSG00000011451|O95785|WIZ;ENSG00000011451|ENST00000673675|WIZ;WIZ|p.A336Gfs*19|1|0.29|ENSG00000011451|chr19:15427058-15427059|-/TTGACCTCTGCTGGGAGGAGGCGGTCCT|frameshift_variant	nc|ENSG00000011451|O95785|WIZ	nc|ENSG00000011451|O95785|WIZ	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.8313293457031	2	510.777274	1019.53999	0.18625	9.5134E-05	-0.7994	-0.00040831	-0.61314	-0.00031318	510.77703214877505	73.708	0.38445	73.708	73.56	73.945	0					12	9	2	0	0	0	0.028476	1	7226	7226		44.117	5.3107	1	514440			8036	965	6516	6526	9098	9098					0.031005723004795982
ELKQMRVW	8	Unmodified	_ELKQMRVW_					0	0	0			REV__ENST00000466794.5_1_19:12769146-12777470:-|nuORF	REV__ENST00000466794.5_1_19:12769146-12777470:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.3091430664062	2	545.297319	1088.58008	-0.39489	-0.00021533	1.1394	0.00062131	0.7445	0.00040598	545.2976369296505	42.775	0.47375	42.775	42.583	43.057	0					14	10	2	0	0	0	0.028476	1	2772	2772		25.45	2.8705	1	209620	+		8037	17680	6517	6527	9099	9099					0.03933795699413167
ELKREIYLLV	10	Unmodified	_ELKREIYLLV_					0	0	0			REV__tr|A0A553SHS4|A0A553SHS4_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_13570PE=3SV=1	REV__tr|A0A553SHS4|A0A553SHS4_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_13570PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	638.388916015625	2	638.387188	1274.75982	2.4392	0.0015571	-0.22634	-0.00014449	2.2128	0.0014126	638.3869726178618	113.66	0.86304	113.66	113.29	114.15	0					46	20	3	0	0	0	0.50999	1	12971	12971		52.937	8.5595	1	722010	+		8038	29833	6518	6528	9100	9100					0.13343378188164934
ELKRKGVR	8	Unmodified	_ELKRKGVR_					0	0	0			REV__ENSG00000168040|ENST00000301838|FADD	REV__ENSG00000168040|ENST00000301838|FADD	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.7916259765625	2	493.3169	984.619247	-0.95473	-0.00047098	0.66647	0.00032878	-0.28826	-0.0001422	493.317181482477	34.934	0.5662	34.934	34.818	35.384	0					15	11	2	0	0	0	0.028476	1	1778	1778		17.365	0.89182	1	65737	+		8039	21340	6519	6529	9101	9101					0.12632264045282682
ELKSFSAIKK	10	Unmodified	_ELKSFSAIKK_					0	0	0		tr|A0A553SS28|A0A553SS28_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02150PE=4SV=1	tr|A0A553SS28|A0A553SS28_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02150PE=4SV=1	tr|A0A553SS28|A0A553SS28_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02150PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8440551757812	2	575.845156	1149.67576	-0.33973	-0.00019563	-2.5857	-0.0014889	-2.9254	-0.0016846	575.8433458482052	142.38	3.7668	140.93	139.05	142.82	-1.4532					179	72	3	0	0	0	0.73063	1	13938	13938		27.047	4.0048	1	165140			8040	34325	6520	6530	9102	9102					0.10690847091291289
ELKSIDFDL	9	Unmodified	_ELKSIDFDL_					0	0	0			REV__ENSG00000124383|ENST00000244230|MPHOSPH10;REV__MPHOSPH10-ATP6V1B1|1|fusion	REV__ENSG00000124383|ENST00000244230|MPHOSPH10	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.7545166015625	2	540.284597	1078.55464	1.4028	0.00075793	1.5822	0.00085483	2.985	0.0016128	540.2849490249449	78.977	0.36899	78.977	78.791	79.16	0					13	8	2	0	0	0	0.027447	1	8020	8020		39.253	14.734	1	416450	+		8041	18684;28676	6521	6531	9103	9103					0.018505996579506245
ELKSLKDAGL	10	Unmodified	_ELKSLKDAGL_					0	0	0			REV__tr|A0A7D7A020|A0A7D7A020_9CLOTAminoacidpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08585PE=4SV=1	REV__tr|A0A7D7A020|A0A7D7A020_9CLOTAminoacidpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08585PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	538.3106689453125	2	537.313689	1072.61282	-0.81	-0.00043523	-1.4843	-0.00079755	-2.2943	-0.0012328	537.3123400033262	95.684	0.79571	94.656	94.516	95.311	-1.0281					25	15	2	0	0	0	0.02663	1	8599	8599		60.118	8.9256	1	38590	+		8042	32432	6522	6532	9104	9104					0.07942281303235177
ELKSLKDAGL	10	Unmodified	_ELKSLKDAGL_					0	0	0			REV__tr|A0A7D7A020|A0A7D7A020_9CLOTAminoacidpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08585PE=4SV=1	REV__tr|A0A7D7A020|A0A7D7A020_9CLOTAminoacidpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08585PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	537.313689	1072.61282	2.6306	0.0014134	-0.93191	-0.00050073	1.6986	0.00091271	537.3132599718085	94.308	0.59549	94.308	94.094	94.69	0	-0.26225	0.00075088	NaN	60.118	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	495880	+		8043	32432	6522	6532							0.07942281303235177
ELKSTKKFV	9	Unmodified	_ELKSTKKFV_					0	0	0			REV__ENSG00000170871|ENST00000307659|KIAA0232	REV__ENSG00000170871|ENST00000307659|KIAA0232	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.2723999023438	2	540.326599	1078.63865	-0.014565	-7.8698E-06	-1.515	-0.0008186	-1.5296	-0.00082647	540.3258103213434	89.77	0.74957	87.195	86.9	87.65	-2.575					24	14	2	0	0	0	0.027462	1	7765	7765		32.812	17.171	1	79341	+		8044	21570	6523	6533	9105	9105					0.10247175545532627
ELKTADLVV	9	Unmodified	_ELKTADLVV_					0	0	0			REV__tr|A0A7D6VQM7|A0A7D6VQM7_9CLOTAsparagine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=asnSPE=3SV=1	REV__tr|A0A7D6VQM7|A0A7D6VQM7_9CLOTAsparagine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=asnSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.2795104980469	2	494.289682	986.564812	0.39778	0.00019662	-0.26262	-0.00012981	0.13517	6.6811E-05	494.2894646311213	83.854	0.76591	81.191	80.828	81.594	-2.6629					26	15	2	0	0	0	0.027441	1	6971	6971		49.442	13.823	1	162510	+		8045	31339	6524	6534	9106	9106					0.07099207383191697
ELKTADLVV	9	Unmodified	_ELKTADLVV_					0	0	0			REV__tr|A0A7D6VQM7|A0A7D6VQM7_9CLOTAsparagine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=asnSPE=3SV=1	REV__tr|A0A7D6VQM7|A0A7D6VQM7_9CLOTAsparagine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=asnSPE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	494.289682	986.564812	0.63482	0.00031379	1.0386	0.00051338	1.6735	0.00082717	494.29014664606683	81.471	0.6553	81.471	81.12	81.776	0	0.18152	0.0004156	NaN	49.442	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3595500	+		8046	31339	6524	6534							0.07099207383191697
ELKTADLVV	9	Unmodified	_ELKTADLVV_					0	0	0			REV__tr|A0A7D6VQM7|A0A7D6VQM7_9CLOTAsparagine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=asnSPE=3SV=1	REV__tr|A0A7D6VQM7|A0A7D6VQM7_9CLOTAsparagine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=asnSPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	494.289682	986.564812	0.63445	0.0003136	-0.52125	-0.00025765	0.1132	5.5954E-05	494.28920112909145	82.961	0.85931	81.362	80.645	81.505	-1.5988	0.07206	-0.0011265	NaN	49.442	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68895	+		8047	31339	6524	6534							0.07099207383191697
ELKTADLVV	9	Unmodified	_ELKTADLVV_					0	0	0			REV__tr|A0A7D6VQM7|A0A7D6VQM7_9CLOTAsparagine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=asnSPE=3SV=1	REV__tr|A0A7D6VQM7|A0A7D6VQM7_9CLOTAsparagine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=asnSPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	494.289682	986.564812	-1.198	-0.00059217	0.95423	0.00047167	-0.2438	-0.00012051	494.2900982744584	83.398	0.81951	81.135	80.612	81.432	-2.2633	-0.15494	0.00033216	NaN	49.442	31	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176560	+		8048	31339	6524	6534							0.07099207383191697
ELKTFKRIL	9	Unmodified	_ELKTFKRIL_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-SECPEP	OvCa9_classI_Rep2	2	574.8001708984375	2	574.363516	1146.71248	-0.33299	-0.00019126	-0.33087	-0.00019004	-0.66386	-0.0003813	574.3633163473147	131.99	0.87885	131.76	131.45	132.33	-0.22697					29	17	2	0	0	0	0.027447	1	13050	13050		39.253	24.388	1	28125			8049	1073	6525	6535	9107	9107					0.14499143707848816
ELKTKIRP	8	Unmodified	_ELKTKIRP_					0	0	0			REV__chrX:20132226-20141625|142|12.86|0.33|5.3|-|0|None,EIF1AX|1	REV__chrX:20132226-20141625|142|12.86|0.33|5.3|-|0|None,EIF1AX|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.7673034667969	2	492.813659	983.612765	1.3123	0.00064671	-2.1572	-0.0010631	-0.84493	-0.00041639	492.8127916368367	67.963	1.518	64.473	64.186	65.704	-3.4902					76	30	5	0	0	0	0.028476	1	5029	5029		23.523	0	1	193370	+		8050	16137	6526	6536	9108	9108					0.12030326093895383
ELKTLAATF	9	Unmodified	_ELKTLAATF_					0	0	0			REV__nc|ENSG00000006747|Q9Y6U3-2|SCIN	REV__nc|ENSG00000006747|Q9Y6U3-2|SCIN	MULTI-MSMS	OvCa9_classI_Rep2	2	497.7880859375	2	497.2844	992.554247	0.15829	7.8716E-05	3.7087	0.0018443	3.867	0.001923	497.28405322830514	110.85	1.776	110.71	110.24	112.01	-0.13961					103	35	5	0	0	0	0.37135	1	10470	10470		54.776	0.053964	1	448890	+		8051	28703	6527	6537	9109	9109					0.05767224728765541
ELKTVTYSL	9	Unmodified	_ELKTVTYSL_					0	0	0		ENSG00000137834|ENST00000288840|SMAD6;nc|ENSG00000137834|O43541-4|SMAD6	ENSG00000137834|ENST00000288840|SMAD6	ENSG00000137834|ENST00000288840|SMAD6	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.7772827148438	2	527.294965	1052.57538	2.1931	0.0011564	1.0856	0.00057242	3.2787	0.0017288	527.2952697464893	94.998	0.68053	94.998	94.648	95.328	0					20	11	2	0	0	0	0.027353	1	10356	10356		52.937	0	1	391780			8052	4628	6528	6538	9110	9110					0.05119190037612498
ELKVEPQPQ	9	Unmodified	_ELKVEPQPQ_					0	0	0		HEMGN|p.T82A|1|0.07|ENSG00000136929|chr9:97931151-97931151|T/C|missense_variant;HEMGN|p.I354Qfs*6|1|0.05|ENSG00000136929|chr9:97930335-97930336|-/GGATACTG|frameshift_variant;ENSG00000136929|ENST00000616898|HEMGN	HEMGN|p.T82A|1|0.07|ENSG00000136929|chr9:97931151-97931151|T/C|missense_variant	HEMGN|p.T82A|1|0.07|ENSG00000136929|chr9:97931151-97931151|T/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.8106689453125	2	534.290214	1066.56587	-0.053527	-2.8599E-05	0.4331	0.0002314	0.37957	0.0002028	534.2899667326726	91.799	0.63116	90.563	90.272	90.904	-1.2355					20	11	2	0	0	0	0.027446	1	8134	8134		51.193	1.7511	1	46234			8053	4534	6529	6539	9111	9111					0.03525421752101465
ELKVLSRLLP	10	Unmodified	_ELKVLSRLLP_					0	0	0		tr|A0A7D7AHH6|A0A7D7AHH6_9CLOTDUF1080domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12490PE=4SV=1	tr|A0A7D7AHH6|A0A7D7AHH6_9CLOTDUF1080domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12490PE=4SV=1	tr|A0A7D7AHH6|A0A7D7AHH6_9CLOTDUF1080domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12490PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.33056640625	2	584.376623	1166.73869	1.5101	0.00088245	0.69682	0.00040721	2.2069	0.0012897	584.3770792774195	112.59	0.49182	112.59	112.39	112.88	0					17	10	3	0	0	0	0.026826	1	12802	12802		52.937	12.879	1	503340			8054	36273	6530	6540	9112	9112					0.16199412879336705
ELKWVLDL	8	Unmodified	_ELKWVLDL_					0	0	0			REV__tr|A0A553SLY7|A0A553SLY7_NIACIAmidohydrolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21590PE=4SV=1	REV__tr|A0A553SLY7|A0A553SLY7_NIACIAmidohydrolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21590PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.8142395019531	2	508.294768	1014.57498	0.50506	0.00025672	-3.6596	-0.0018601	-3.1545	-0.0016034	508.2928095323835	97.588	0.55937	95.21	94.808	95.368	-2.3786					16	10	2	0	0	0	0.028476	1	8655	8655		99.375	11.679	1	36008	+		8055	30278	6531	6541	9113	9113					0.06827815108431423
ELKYDKQIDL	10	Unmodified	_ELKYDKQIDL_					0	0	0		ENST00000482262.1_1_3:51425158-51426517:+|nuORF;ENST00000446668.5_1_3:51424348-51426517:+|nuORF;ENST00000470900.1_1_3:51423580-51426517:+|nuORF;ENSG00000145050|ENST00000528157|MANF	ENST00000482262.1_1_3:51425158-51426517:+|nuORF	ENST00000482262.1_1_3:51425158-51426517:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	422.2322998046875	3	422.230966	1263.67107	0.17065	7.2055E-05	-0.50018	-0.00021119	-0.32952	-0.00013914	422.23074726144904	51.23	1.7919	51.23	50.949	52.741	0					119	41	6	0	0	0	0.31125	1	3925	3925		79.489	1.9558	1	23415000			8056	5200	6532	6542	9114	9114					0.04977918157851491
ELKYGILSVK	10	Unmodified	_ELKYGILSVK_					0	0	0		tr|A0A553SLI5|A0A553SLI5_NIACIHsp20/alphacrystallinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20680PE=3SV=1	tr|A0A553SLI5|A0A553SLI5_NIACIHsp20/alphacrystallinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20680PE=3SV=1	tr|A0A553SLI5|A0A553SLI5_NIACIHsp20/alphacrystallinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20680PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	575.3457641601562	2	575.347532	1148.68051	-6.2917	-0.0036199	2.5771	0.0014827	-3.7146	-0.0021372	575.3489585356984	154.97	1.0558	153.9	153.56	154.61	-1.073					68	25	4	0	0	0	0.73063	1	13315	13315		27.047	3.5246	1	137860			8057	33727	6533	6543	9115	9115					0.11211731234061517
ELLAIARR	8	Unmodified	_ELLAIARR_					0	0	0			REV__tr|A0A7D7AFH9|A0A7D7AFH9_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_05710PE=4SV=1	REV__tr|A0A7D7AFH9|A0A7D7AFH9_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_05710PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.7467956542969	2	471.298176	940.581799	0.12514	5.8979E-05	4.014	0.0018918	4.1391	0.0019508	471.3000119421683	117.45	0.99548	116.1	115.83	116.83	-1.3539					35	18	3	0	0	0	0.028476	1	10959	10959		17.365	0.89182	1	36186	+		8058	32715	6534	6544	9116	9116					0.10913172779657998
ELLAIGKTK	9	Unmodified	_ELLAIGKTK_					0	0	0		NLRP3|p.R252Sfs*3|1|0.04|ENSG00000162711|chr1:247424198-247424199|-/T|frameshift_variant;nc|ENSG00000162711|Q96P20-3|NLRP3;ENST00000474792.1_1_1:247582090-247588902:+|nuORF;nc|ENSG00000162711|Q96P20-2|NLRP3;nc|ENSG00000162711|Q96P20-5|NLRP3;nc|ENSG00000162711|Q96P20-4|NLRP3;nc|ENSG00000162711|Q96P20-6|NLRP3;ENSG00000162711|ENST00000336119|NLRP3;nc|ENSG00000162711|Q96P20|NLRP3	NLRP3|p.R252Sfs*3|1|0.04|ENSG00000162711|chr1:247424198-247424199|-/T|frameshift_variant	NLRP3|p.R252Sfs*3|1|0.04|ENSG00000162711|chr1:247424198-247424199|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.7619323730469	2	486.808042	971.601532	0.40055	0.00019499	-1.0591	-0.00051557	-0.65852	-0.00032058	486.80743270725014	59.977	0.78559	56.546	56.358	57.144	-3.43					26	15	2	0	0	0	0.027426	1	4084	4084		47.657	0	1	97979			8059	6218	6535	6545	9117	9117					0.11459503999753906
ELLALYRP	8	Unmodified	_ELLALYRP_					0	0	0			REV__ENSG00000146828|ENST00000354161|SLC12A9	REV__ENSG00000146828|ENST00000354161|SLC12A9	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.7903747558594	2	487.78711	973.559667	3.5562	0.0017347	2.7211	0.0013273	6.2773	0.003062	487.7882512057077	132.82	4.8462	131.32	130.38	135.22	-1.5015					236	97	4	0	0	0	0.73938	1	12849	12849		31.955	3.7006	1	143240	+		8060	20028	6536	6546	9118	9118					0.0718294831123103
ELLAPIVFV	9	Unmodified	_ELLAPIVFV_					0	0	0		nc|ENSG00000131374|Q92609|TBC1D5;ENSG00000131374|ENST00000696125|TBC1D5	nc|ENSG00000131374|Q92609|TBC1D5	nc|ENSG00000131374|Q92609|TBC1D5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.27984619140625	2	500.807511	999.600469	-0.88094	-0.00044118	-3.1666	-0.0015859	-4.0476	-0.0020271	500.80561473930607	91.461	2.4819	88.918	88.346	90.828	-2.5425					104	48	4	0	0	0	0.027462	1	7845	7845		30.504	15.639	1	807290			8061	4058	6537	6547	9119	9119					0.10065289630858842
ELLARLRGV	9	Unmodified	_ELLARLRGV_					0	0	0		ENSG00000064687|ENST00000263094|ABCA7;nc|ENSG00000064687|Q8IZY2-2|ABCA7;ENST00000525939.1_1_19:1062261-1063875:+|nuORF	ENSG00000064687|ENST00000263094|ABCA7	ENSG00000064687|ENST00000263094|ABCA7	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.822998046875	2	513.824558	1025.63456	0.64137	0.00032955	-0.47795	-0.00024558	0.16342	8.3967E-05	513.8244834183118	68.041	1.9125	64.55	64.087	66	-3.4902					122	38	5	0	0	0	0.27001	1	5060	5060		66.429	7.6473	1	2120800			8062	1303	6538	6548	9120	9120					0.12277130842471706
ELLASGDPLP	10	Unmodified	_ELLASGDPLP_					0	0	0		nc|ENSG00000168003|P08195|SLC3A2;nc|ENSG00000168003|P08195-4|SLC3A2	nc|ENSG00000168003|P08195|SLC3A2	nc|ENSG00000168003|P08195|SLC3A2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.79388427734375	2	506.27149	1010.52843	-1.0921	-0.00055289	2.3228	0.001176	1.2307	0.00062307	506.7722347202094	46.113	0.57516	43.04	42.771	43.346	-3.0724					12	10	2	0	0	0	0.026915	1	2386	2386		27.882	1.1893	1	11158			8063	15163	6539	6549	9121	9121					0.023583304864928323
ELLASLTPE	9	Unmodified	_ELLASLTPE_					0	0	0		ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.2870788574219	2	486.76604	971.517527	-0.19889	-9.6815E-05	1.5815	0.00076983	1.3826	0.00067301	486.7666656321169	105.07	0.65828	105.07	104.7	105.36	0					35	14	3	0	0	0	0.027051	1	11797	11797		102.77	39.467	1	442060			8064	1551	6540	6550	9122	9122					0.03062928112183272
ELLDEAFEL	9	Unmodified	_ELLDEAFEL_					0	0	0		ENSG00000135094|ENST00000257549|SDS;SDS|p.N307Rfs*6|1|0.39|ENSG00000135094|chr12:113392982-113393012|GCGCCCGCAGCTGGGCCAGGCTGATGTTGCT/-|frameshift_variant;ENST00000553112.5_1_12:113834968-113841579:-|nuORF	ENSG00000135094|ENST00000257549|SDS	ENSG00000135094|ENST00000257549|SDS	MULTI-MSMS	OvCa99_classI_Rep5	1	539.7704467773438	2	539.76878	1077.52301	1.6662	0.00089937	0.38346	0.00020698	2.0497	0.0011063	539.7688072068732	122.74	1.2477	122.74	122.45	123.69	0					69	26	4	0	0	0	0.18193	1	14123	14123		79.451	0	1	1870200			8065	4354	6541	6551	9123	9123					-0.01265393095991385
ELLDGKKDNI	10	Unmodified	_ELLDGKKDNI_					0	0	0		tr|A0A553SPW0|A0A553SPW0_NIACIAspartokinaseOS=NialliacirculansOX=1397GN=CEQ21_10875PE=3SV=1	tr|A0A553SPW0|A0A553SPW0_NIACIAspartokinaseOS=NialliacirculansOX=1397GN=CEQ21_10875PE=3SV=1	tr|A0A553SPW0|A0A553SPW0_NIACIAspartokinaseOS=NialliacirculansOX=1397GN=CEQ21_10875PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	573.3237915039062	2	572.814053	1143.61355	0.0096297	5.516E-06	-1.2575	-0.00072034	-1.2479	-0.00071482	573.3155008907338	111.99	2.3471	110.48	109.74	112.08	-1.5111					17	12	2	0	0	0	0.026975	1	10290	10290		38.754	0	1	61900			8066	34094	6542	6552	9124	9124					0.04749075952304338
ELLDGKKDNI	10	Unmodified	_ELLDGKKDNI_					0	0	0		tr|A0A553SPW0|A0A553SPW0_NIACIAspartokinaseOS=NialliacirculansOX=1397GN=CEQ21_10875PE=3SV=1	tr|A0A553SPW0|A0A553SPW0_NIACIAspartokinaseOS=NialliacirculansOX=1397GN=CEQ21_10875PE=3SV=1	tr|A0A553SPW0|A0A553SPW0_NIACIAspartokinaseOS=NialliacirculansOX=1397GN=CEQ21_10875PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	572.814053	1143.61355	0.8948	0.00051255	-1.2447	-0.00071297	-0.34988	-0.00020042	572.8120859937584	111.48	1.0379	110.37	110.15	111.19	-1.1038	-0.052911	9.9074E-06	NaN	43.651	23	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64812			8067	34094	6542	6552							0.04749075952304338
ELLDLILPQ	9	Unmodified	_ELLDLILPQ_					0	0	0		tr|A0A553SNY2|A0A553SNY2_NIACISwarmingmotilityproteinSwrBOS=NialliacirculansOX=1397GN=CEQ21_25360PE=4SV=1	tr|A0A553SNY2|A0A553SNY2_NIACISwarmingmotilityproteinSwrBOS=NialliacirculansOX=1397GN=CEQ21_25360PE=4SV=1	tr|A0A553SNY2|A0A553SNY2_NIACISwarmingmotilityproteinSwrBOS=NialliacirculansOX=1397GN=CEQ21_25360PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.8348388671875	2	527.313158	1052.61176	-0.60357	-0.00031827	0.08227	4.3382E-05	-0.5213	-0.00027489	527.3130435132456	69.825	1.248	67.255	66.416	67.663	-2.5707					35	24	2	0	0	0	0.027232	1	5563	5563		47.657	0	1	59851			8068	33977	6543	6553	9125	9125					0.08756066934347473
ELLDPVRFKTY	11	Unmodified	_ELLDPVRFKTY_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa99_classI_Rep5	1	460.9224853515625	3	460.922244	1379.7449	-0.45316	-0.00020887	-2.602	-0.0011993	-3.0551	-0.0014082	460.9210087980982	55.294	0.69971	55.294	55.023	55.723	0					48	16	4	0	0	0	0.68059	1	4517	4517		36.318	0	1	3236100	+		8069	28942;32737	6544	6554	9126	9126					0.07021886320194426
ELLDPVRFKTY	11	Unmodified	_ELLDPVRFKTY_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	461.7601623535156	3	460.922244	1379.7449	-0.45316	-0.00020887	-2.602	-0.0011993	-3.0551	-0.0014082	460.9210087980982	55.294	0.69971	55.294	55.023	55.723	0					48	16	4	0	0	0	0.026221	1	4507	4507		9.6461	0	1	3236100	+		8070	28942;32737	6544	6554	9127	9127					0.07021886320194426
ELLDQVPLIK	10	Unmodified	_ELLDQVPLIK_					0	0	0		tr|A0A553SFL7|A0A553SFL7_NIACIDUF3603familyproteinOS=NialliacirculansOX=1397GN=CEQ21_09085PE=4SV=1	tr|A0A553SFL7|A0A553SFL7_NIACIDUF3603familyproteinOS=NialliacirculansOX=1397GN=CEQ21_09085PE=4SV=1	tr|A0A553SFL7|A0A553SFL7_NIACIDUF3603familyproteinOS=NialliacirculansOX=1397GN=CEQ21_09085PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.3120727539062	2	584.352814	1166.69108	0.8129	0.00047502	-3.8094	-0.0022261	-2.9965	-0.001751	584.3501864685841	156.09	0.80908	156.09	155.84	156.65	0					52	15	5	0	0	0	0.026906	1	18340	18340		33.922	0	1	184990			8071	33049	6545	6555	9128	9128					0.1143971388846694
ELLECGRARVL	11	Unmodified	_ELLECGRARVL_					0	0	0		TAF11-MYO19|1|fusion;TAF11-MYO19|2|fusion;nc|ENSG00000278259|Q96H55-4|MYO19;ENSG00000278259|ENST00000614623|MYO19	TAF11-MYO19|1|fusion	TAF11-MYO19|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	629.8505249023438	2	629.850447	1257.68634	-0.69016	-0.0004347	-2.6276	-0.001655	-3.3177	-0.0020897	629.8483567605704	92.117	2.5423	90.093	89.534	92.076	-2.0241					118	51	3	0	0	0	0.51772	1	5804	5804		42.864	10.114	1	1135500			8072	32942	6546	6556	9129	9129					0.06780506474069625
ELLEESPYD	9	Unmodified	_ELLEESPYD_					0	0	0			REV__nc|ENSG00000154305|Q5JRA6-2|MIA3;REV__ENST00000470521.1_1_1:222791452-222819114:+|nuORF	REV__nc|ENSG00000154305|Q5JRA6-2|MIA3	MULTI-SECPEP	OvCa9_classI_Rep3	3	546.7808227539062	2	547.748044	1093.48154	0.85705	0.00046945	-1.1966	-0.00065544	-0.33956	-0.00018599	547.7478847750491	122.74	0.20965	121.71	121.53	121.74	-1.0286					6	3	2	0	0	0	0.027462	1	9437	9437		30.504	10.507	1	6082.8	+		8073	20376;26262	6547	6557	9130	9130					-0.06146573855312454
ELLEHLYL	8	Unmodified	_ELLEHLYL_					0	0	0			REV__ENST00000581386.5_1_17:26684693-26686548:+|nuORF	REV__ENST00000581386.5_1_17:26684693-26686548:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.827880859375	2	515.2844	1028.55425	-0.10974	-5.6546E-05	-2.8665	-0.0014771	-2.9762	-0.0015336	515.2829757001336	70.807	0.85838	70.807	70.21	71.068	0					29	21	2	0	0	0	0.028476	1	6721	6721		52.299	0	1	1082600	+		8074	23473	6548	6558	9131	9131					0.04111224728740126
ELLEIPYEK	9	Unmodified	_ELLEIPYEK_					0	0	0		tr|A0A7D7A0Q9|A0A7D7A0Q9_9CLOTGlutamatesynthaselargesubunitOS=ClostridiumintestinaleOX=36845GN=gltBPE=3SV=1	tr|A0A7D7A0Q9|A0A7D7A0Q9_9CLOTGlutamatesynthaselargesubunitOS=ClostridiumintestinaleOX=36845GN=gltBPE=3SV=1	tr|A0A7D7A0Q9|A0A7D7A0Q9_9CLOTGlutamatesynthaselargesubunitOS=ClostridiumintestinaleOX=36845GN=gltBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.280029296875	2	567.308072	1132.60159	2.013	0.001142	1.8024	0.0010225	3.8154	0.0021645	567.3090001698259	108.78	0.17312	108.78	108.63	108.8	0					8	3	3	0	0	0	0.027462	1	12304	12304		29.15	14.285	1	395480			8075	36005	6549	6559	9132	9132					0.04059459209088345
ELLELAPQHA	10	Unmodified	_ELLELAPQHA_					0	0	0			REV__ENST00000447814.1_2_2:95830931-95831156:-|nuORF	REV__ENST00000447814.1_2_2:95830931-95831156:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	560.8051147460938	2	560.803488	1119.59242	0.74763	0.00041927	-0.19889	-0.00011154	0.54874	0.00030773	560.8032406363295	113.08	1.9194	112.01	111.66	113.58	-1.0753					84	37	3	0	0	0	0.73378	1	8318	8318		26.693	2.1737	1	455470	+		8076	25922	6550	6560	9133	9133					0.03741110643431966
ELLFINEYDT	10	Unmodified	_ELLFINEYDT_					0	0	0		nc|ENSG00000174844|Q6ZR08-2|DNAH12	nc|ENSG00000174844|Q6ZR08-2|DNAH12	nc|ENSG00000174844|Q6ZR08-2|DNAH12	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.254150390625	3	419.539688	1255.59723	-0.54199	-0.00022738	-2.504	-0.0010505	-3.046	-0.0012779	419.87305822825607	65.966	0.38409	65.966	65.79	66.174	0					17	9	2	0	0	0	0.026956	1	6113	6113		19.263	0	1	522530			8077	15186	6551	6561	9134	9134					-0.020340500044767396
ELLFLHVY	8	Unmodified	_ELLFLHVY_					0	0	0		ENSG00000136247|ENST00000335965|ZDHHC4;ENST00000474097.5_1_7:6620192-6623202:+|nuORF	ENSG00000136247|ENST00000335965|ZDHHC4	ENSG00000136247|ENST00000335965|ZDHHC4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.2634887695312	2	517.289485	1032.56442	-0.62732	-0.0003245	-3.1472	-0.001628	-3.7745	-0.0019525	517.2885915517414	56.095	1.1138	52.801	52.26	53.374	-3.2944					41	21	3	0	0	0	0.028476	1	3577	3577		28.254	6.2944	1	62026			8078	4476	6552	6562	9135	9135					0.04943832454000585
ELLFNETIN	9	Unmodified	_ELLFNETIN_					0	0	0		nc|ENSG00000134812|P27352-2|CBLIF;ENSG00000134812|ENST00000257248|CBLIF	nc|ENSG00000134812|P27352-2|CBLIF	nc|ENSG00000134812|P27352-2|CBLIF	MULTI-MSMS	OvCa9_classI_Rep3	3	546.7817993164062	2	546.782222	1091.54989	-0.36544	-0.00019982	0.32127	0.00017567	-0.04417	-2.4151E-05	546.7822304801582	131.49	1.0801	130.37	130.06	131.14	-1.1249					48	21	4	0	0	0	0.51865	1	10488	10488		40.778	0	1	61799			8079	4332	6553	6563	9136	9136					0.007777155151870829
ELLGCEPGSP	10	Unmodified	_ELLGCEPGSP_					0	0	0		nc|ENSG00000197558|A2VEC9|SSPOP;ENST00000475488.3_1_7:149493482-149494663:+|nuORF	nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.3084716796875	2	501.23405	1000.45355	-0.3781	-0.00018952	1.0639	0.00053326	0.68579	0.00034374	501.23446345899674	56.099	0.44968	56.099	55.932	56.382	0					13	10	2	0	0	0	0.02661	1	4634	4634		40.778	0	1	279810			8080	15250	6554	6564	9137	9137					-0.04666175316401677
ELLGHWAF	8	Unmodified	_ELLGHWAF_					0	0	0			REV__ENST00000609898.1_1_10:45454636-45454795:-|nuORF	REV__ENST00000609898.1_1_10:45454636-45454795:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.2596435546875	2	486.750527	971.486502	2.3077	0.0011233	-4.4003	-0.0021419	-2.0926	-0.0010186	486.74824543283734	80.17	0.5398	80.17	80.031	80.571	0					17	12	2	0	0	0	0.028476	1	8255	8255		21.702	0.7554	1	268770	+		8081	28102	6555	6565	9138	9138					-0.00038180411388566426
ELLGLVAE	8	Unmodified	_ELLGLVAE_					0	0	0			REV__DLG5|p.K1005Gfs*109|1|0.22|ENSG00000151208|chr10:77821432-77821471|TTCTGGGAGGTTTTGGGGGTGTCAGAGGCCCCGCCCTCTT/-|frameshift_variant	REV__DLG5|p.K1005Gfs*109|1|0.22|ENSG00000151208|chr10:77821432-77821471|TTCTGGGAGGTTTTGGGGGTGTCAGAGGCCCCGCCCTCTT/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	422.7478942871094	2	422.244744	842.474934	-0.13916	-5.876E-05	2.513	0.0010611	2.3739	0.0010024	422.2457586100022	38.904	0.58207	38.904	38.705	39.287	0					19	12	2	0	0	0	0.028476	1	2297	2297		25.45	0	1	355780	+		8082	16303	6556	6566	9139	9139					0.04739577774626014
ELLGVLKNVT	10	Unmodified	_ELLGVLKNVT_					0	0	0		ENSG00000173612|ENST00000310357|GPRC6A	ENSG00000173612|ENST00000310357|GPRC6A	ENSG00000173612|ENST00000310357|GPRC6A	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.293701171875	2	543.331882	1084.64921	2.4198	0.0013148	-0.013189	-7.166E-06	2.4066	0.0013076	543.3317498623469	91.593	0.42198	91.593	91.415	91.837	0					15	9	2	0	0	0	0.026681	1	9852	9852		52.937	13.684	1	284200			8083	7397	6557	6567	9140	9140					0.11027158199954101
ELLHLIIEEL	10	Unmodified	_ELLHLIIEEL_					0	0	0		tr|A0A553SJ30|A0A553SJ30_NIACITetratricopeptiderepeatproteinOS=NialliacirculansOX=1397GN=CEQ21_15980PE=4SV=1	tr|A0A553SJ30|A0A553SJ30_NIACITetratricopeptiderepeatproteinOS=NialliacirculansOX=1397GN=CEQ21_15980PE=4SV=1	tr|A0A553SJ30|A0A553SJ30_NIACITetratricopeptiderepeatproteinOS=NialliacirculansOX=1397GN=CEQ21_15980PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3553466796875	2	611.358096	1220.70164	-3.1571	-0.0019301	-0.12375	-7.5658E-05	-3.2809	-0.0020058	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.72319	1	12894	12894		27.882	4.3595	1	666990			8084	33458	6558	6568	9141	9141					0.1001169654291516
ELLIKTTNE	9	Unmodified	_ELLIKTTNE_					0	0	0			REV__L1P2_dup554|chr5:118974817-118975709:-|1.3792945865888482|0.1408758943517007|3.29|429.0|21|2|sense	REV__L1P2_dup554|chr5:118974817-118975709:-|1.3792945865888482|0.1408758943517007|3.29|429.0|21|2|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.8154907226562	2	530.797872	1059.58119	0.27699	0.00014703	0.086165	4.5736E-05	0.36315	0.00019276	530.797653554656	67.86	1.4238	64.37	63.839	65.262	-3.4902					81	28	4	0	0	0	0.027462	1	5015	5015		29.17	13.528	1	232530	+		8085	28452	6559	6569	9142	9142					0.05378288549286481
ELLILEVI	8	Unmodified	_ELLILEVI_					0	0	0			REV__ENST00000493008.1_1_10:32096588-32098081:-|nuORF	REV__ENST00000493008.1_1_10:32096588-32098081:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	471.74810791015625	2	471.299519	940.584485	-0.34797	-0.000164	2.142	0.0010095	1.7941	0.00084555	471.3004399377984	117.12	0.9906	116.08	115.75	116.74	-1.0324					31	19	3	0	0	0	0.028476	1	8767	8767		31.955	0	1	22969	+		8086	21078	6560	6570	9143	9143					0.11181583393954497
ELLILKDKE	9	Unmodified	_ELLILKDKE_					0	0	0			REV__tr|A0A7D7A5L2|A0A7D7A5L2_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06535PE=4SV=1	REV__tr|A0A7D7A5L2|A0A7D7A5L2_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06535PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.808837890625	2	550.831714	1099.64888	1.8305	0.0010083	0.10666	5.8752E-05	1.9372	0.0010671	550.8316473158662	77.44	1.2083	77.44	77.126	78.335	0					81	28	4	0	0	0	0.02744	1	7919	7919		62.107	9.1707	1	7149800	+		8087	32639	6561	6571	9144	9144					0.10303738480092761
ELLIRLPK	8	Unmodified	_ELLIRLPK_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	OvCa9_classI_Rep3	3	491.8010559082031	2	491.326402	980.638252	0.022498	1.1054E-05	-3.0846	-0.0015156	-3.0621	-0.0015045	491.3259597670861	107.23	0.3443	105.96	105.86	106.2	-1.267					8	6	2	0	0	0	0.028476	1	7612	7612		60.972	16.855	1	14854	+		8088	22662	6562	6572	9145	9145					0.14715800616329489
ELLIRLPK	8	Unmodified	_ELLIRLPK_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-MATCH	OvCa99_classI_Rep5	1		2	491.326402	980.638252	2.3667	0.0011628	0.041374	2.0328E-05	2.408	0.0011831	491.3263215158637	106.26	0.52666	106.26	106.05	106.58	0	0.15227	0.00030809	NaN	60.972	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103850	+		8089	22662	6562	6572							0.14715800616329489
ELLIVLTSALP	11	Unmodified	_ELLIVLTSALP_					0	0	0		ENST00000461757.1_1_2:27424191-27424383:-|nuORF	ENST00000461757.1_1_2:27424191-27424383:-|nuORF	ENST00000461757.1_1_2:27424191-27424383:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	585.312744140625	2	584.863015	1167.71148	-1.4877	-0.00087008	2.6321	0.0015394	1.1444	0.00066934	584.8647638234103	80.688	1.0278	78.365	77.929	78.957	-2.3226					37	19	3	0	0	0	0.025239	1	4411	4411		19.104	9.9206	1	37352			8090	12185	6563	6573	9146	9146					0.1343288454827416
ELLKANSQLT	10	Unmodified	_ELLKANSQLT_					0	0	0			REV__ENSG00000135968|ENST00000309863|GCC2	REV__ENSG00000135968|ENST00000309863|GCC2	MULTI-MSMS	OvCa9_classI_Rep2	2	558.8169555664062	2	558.816596	1115.61864	0.30325	0.00016946	0.12276	6.86E-05	0.42601	0.00023806	558.8161111583237	45.682	2.04	42.972	42.697	44.737	-2.7097					67	40	2	0	0	0	0.5675	1	2703	2703		45.972	1.5951	1	1772600	+		8091	19343	6564	6574	9147	9147					0.06545379814906482
ELLKANSQLT	10	Unmodified	_ELLKANSQLT_					0	0	0			REV__ENSG00000135968|ENST00000309863|GCC2	REV__ENSG00000135968|ENST00000309863|GCC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.817626953125	2	558.816596	1115.61864	0.090881	5.0786E-05	-0.054252	-3.0317E-05	0.036629	2.0469E-05	558.8161517620805	45.974	2.6143	42.901	42.613	45.228	-3.0724					111	50	3	0	0	0	0.19075	1	2439	2439		95.815	10.654	1	5957700	+		8092	19343	6564	6574	9148	9148					0.06545379814906482
ELLKHDKV	8	Unmodified	_ELLKHDKV_					0	0	0			REV__ENSG00000112297|ENST00000633556|CRYBG1	REV__ENSG00000112297|ENST00000633556|CRYBG1	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.28143310546875	2	491.290017	980.565481	2.4665	0.0012118	0.10595	5.2052E-05	2.5724	0.0012638	491.28997046876697	94.134	0.46951	94.134	93.964	94.433	0					19	10	3	0	0	0	0.028476	1	10231	10231		60.972	7.6205	1	323510	+		8093	18092	6565	6575	9149	9149					0.07442046822893644
ELLKHLAEK	9	Unmodified	_ELLKHLAEK_					0	0	0		nc|ENSG00000015592|Q9H169-3|STMN4;nc|ENSG00000015592|Q9H169|STMN4;nc|ENSG00000015592|Q9H169-4|STMN4;ENSG00000015592|ENST00000350889|STMN4	nc|ENSG00000015592|Q9H169-3|STMN4	nc|ENSG00000015592|Q9H169-3|STMN4	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.3075561523438	2	540.824224	1079.63389	2.4116	0.0013042	4.0474	0.0021889	6.459	0.0034932	540.8261489717912	107.45	0.66989	107.45	107.23	107.9	0					36	15	3	0	0	0	0.027462	1	12100	12100		32.812	0	1	691250			8094	1005	6566	6576	9150	9150					0.09726291402739662
ELLKLPDFVE	10	Unmodified	_ELLKLPDFVE_					0	0	0		tr|A0A7D6VR92|A0A7D6VR92_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18515PE=4SV=1	tr|A0A7D6VR92|A0A7D6VR92_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18515PE=4SV=1	tr|A0A7D6VR92|A0A7D6VR92_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18515PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	402.23980712890625	3	401.560423	1201.65944	1.4258	0.00057254	-3.3053	-0.0013273	-1.8795	-0.00075474	401.89331010936604	71.136	0.5004	68.417	68.214	68.714	-2.7196					15	9	2	0	0	0	0.027006	1	3315	3315		37.508	10.758	1	17245			8095	34904	6567	6577	9151	9151					0.06667721134522253
ELLKQRHVA	9	Unmodified	_ELLKQRHVA_					0	0	0			REV__SPTA1|p.V2114Gfs*21|1|0.16|ENSG00000163554|chr1:158620246-158620247|-/ATCTTCTAAGTCTCCTTTTTCTAGGTCATTTACCC|frameshift_variant	REV__SPTA1|p.V2114Gfs*21|1|0.16|ENSG00000163554|chr1:158620246-158620247|-/ATCTTCTAAGTCTCCTTTTTCTAGGTCATTTACCC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.8095092773438	2	547.327465	1092.64038	1.9499	0.0010672	-0.4517	-0.00024723	1.4982	0.00081998	547.3258296078759	85.702	0.24578	85.702	85.585	85.83	0					6	5	2	0	0	0	0.027462	1	9000	9000		30.504	1.3541	1	72525	+		8096	29449	6568	6578	9152	9152					0.09776229354133648
ELLKVFSAE	9	Unmodified	_ELLKVFSAE_					0	0	0			REV__tr|A0A7D6W3N6|A0A7D6W3N6_9CLOTDNAtopoisomerase1OS=ClostridiumintestinaleOX=36845GN=topAPE=3SV=1	REV__tr|A0A7D6W3N6|A0A7D6W3N6_9CLOTDNAtopoisomerase1OS=ClostridiumintestinaleOX=36845GN=topAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.2901611328125	2	518.289682	1034.56481	-1.1781	-0.00061062	-1.3024	-0.00067501	-2.4805	-0.0012856	518.2889100758878	53.587	0.97174	50.379	50.149	51.12	-3.208					51	18	3	0	0	0	0.40818	1	3292	3292		51.193	0	1	477110	+		8097	31919	6569	6579	9153	9153					0.04891207383184337
ELLLIKPL	8	Unmodified	_ELLLIKPL_					0	0	0		tr|A0A7D6ZTH5|A0A7D6ZTH5_9CLOTChemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11310PE=3SV=1	tr|A0A7D6ZTH5|A0A7D6ZTH5_9CLOTChemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11310PE=3SV=1	tr|A0A7D6ZTH5|A0A7D6ZTH5_9CLOTChemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11310PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	469.817626953125	2	469.817879	937.621205	0.87275	0.00041003	-0.75105	-0.00035286	0.1217	5.7177E-05	469.8173779893202	129.72	2.0809	129.49	129.22	131.3	-0.22696					76	41	3	0	0	0	0.65062	2	12786	12786;12804		53.351	5.6941	1	247220			8098	35753	6570	6580	9154;9155	9154					0.14989880010500656
ELLLRAVERR	10	Unmodified	_ELLLRAVERR_					0	0	0		nc|ENSG00000137802|O60336-2|MAPKBP1;ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1;ENST00000505061.5_1_15:42111671-42117631:+|nuORF;nc|ENSG00000137802|O60336-4|MAPKBP1	nc|ENSG00000137802|O60336-2|MAPKBP1	nc|ENSG00000137802|O60336-2|MAPKBP1	MULTI-MSMS	OvCa9_classI_Rep2	2	627.8857421875	2	627.885678	1253.7568	1.5846	0.00099492	-1.5011	-0.00094252	0.083456	5.2401E-05	627.8845502144422	27.594	0.6021	24.885	24.742	25.344	-2.7097					21	13	3	0	0	0	0.84881	1	494	494		12.812	3.1061	1	23299			8099	4616	6571	6581	9156	9156					0.1400754785402114
ELLLRRWLSP	10	Unmodified	_ELLLRRWLSP_					0	0	0			REV__ENST00000457010.6_2_16:31477307-31478207:+|nuORF	REV__ENST00000457010.6_2_16:31477307-31478207:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8829956054688	2	641.885147	1281.75574	-1.8585	-0.0011929	-2.0743	-0.0013315	-3.9328	-0.0025244	641.8836457762243	148.91	0.99602	147.48	146.88	147.87	-1.4344					50	20	3	0	0	0	0.82648	1	14686	14686		15.642	0.77694	1	64864	+		8100	19695	6572	6582	9157	9157					0.12613333485114708
ELLLRVPFL	9	Unmodified	_ELLLRVPFL_					0	0	0		ENSG00000134058|ENST00000256443|CDK7	ENSG00000134058|ENST00000256443|CDK7	ENSG00000134058|ENST00000256443|CDK7	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.8306274414062	2	550.347335	1098.68012	2.3086	0.0012705	-2.9692	-0.0016341	-0.66058	-0.00036355	550.3451140009774	80.483	0.34552	80.483	80.314	80.659	0					15	7	3	0	0	0	0.027462	1	8262	8262		40.778	6.6056	1	444250			8101	4256	6573	6583	9158	9158					0.1347235630485102
ELLLVDGESL	10	Unmodified	_ELLLVDGESL_					0	0	0			REV__tr|A0A553SJ39|A0A553SJ39_NIACIPhosphoglyceratekinaseOS=NialliacirculansOX=1397GN=pgkPE=3SV=1	REV__tr|A0A553SJ39|A0A553SJ39_NIACIPhosphoglyceratekinaseOS=NialliacirculansOX=1397GN=pgkPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	544.821044921875	2	544.297704	1086.58086	-0.53033	-0.00028866	1.1559	0.00062915	0.62557	0.00034049	544.2982276432869	89.815	0.35993	87.735	87.541	87.901	-2.0805					11	6	2	0	0	0	0.026891	1	5527	5527		24.519	0	1	19188	+		8102	29961	6574	6584	9159	9159					0.041028688294545645
ELLLYSDVE	9	Unmodified	_ELLLYSDVE_					0	0	0			REV__tr|A0A553ST98|A0A553ST98_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04570PE=3SV=1	REV__tr|A0A553ST98|A0A553ST98_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04570PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.79296875	2	540.776605	1079.53866	2.0953	0.0011331	-0.32894	-0.00017788	1.7663	0.0009552	540.7760812318089	107.37	0.54288	107.37	107.14	107.69	0					29	12	4	0	0	0	0.027441	1	12145	12145		45.952	14.373	1	270720	+		8103	30934	6575	6585	9160	9160					0.0020689342104560637
ELLMKKVL	8	Unmodified	_ELLMKKVL_					0	0	0			REV__ENST00000606965.5_1_6:158535743-158540110:-|nuORF	REV__ENST00000606965.5_1_6:158535743-158540110:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.3101501464844	2	487.309364	972.604174	-0.26351	-0.00012841	-1.2268	-0.00059783	-1.4903	-0.00072624	487.30905598189844	105.88	1.5134	103.86	103.15	104.66	-2.0161					60	29	3	0	0	0	0.62934	1	9626	9626		57.811	2.3071	1	351030	+		8104	18587	6576	6586	9161	9161					0.11677636133060787
ELLMKKVL	8	Unmodified	_ELLMKKVL_					0	0	0			REV__ENST00000606965.5_1_6:158535743-158540110:-|nuORF	REV__ENST00000606965.5_1_6:158535743-158540110:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	487.309364	972.604174	-0.0707	-3.4453E-05	-6.6906	-0.0032604	-6.7613	-0.0032948	487.30610823520095	105.15	0.88399	103.8	103.47	104.35	-1.3482	-0.030914	-0.00062984	NaN	57.811	42	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	343850	+		8105	18587	6576	6586							0.11677636133060787
ELLMRQDQ	8	Unmodified	_ELLMRQDQ_					0	0	0			REV__FBXO30|p.M141Lfs*20|1|0.57|ENSG00000118496|chr6:145805952-145805985|GTTTGGATACTTTATCAGTTGCTTTTGACATCAT/-|frameshift_variant	REV__FBXO30|p.M141Lfs*20|1|0.57|ENSG00000118496|chr6:145805952-145805985|GTTTGGATACTTTATCAGTTGCTTTTGACATCAT/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.2428588867188	2	516.760766	1031.50698	-1.0549	-0.00054512	-2.741	-0.0014165	-3.7959	-0.0019616	516.7591190170485	51.653	0.89196	48.84	48.552	49.444	-2.8129					27	17	2	0	0	0	0.028476	1	3451	3451		30.504	0	1	25016	+		8106	18401	6577	6587	9162	9162					-0.007513778138900307
ELLPCLQQD	9	Unmodified	_ELLPCLQQD_					0	0	0		nc|ENSG00000151623|P08235-2|NR3C2;nc|ENSG00000151623|P08235-4|NR3C2;ENSG00000151623|ENST00000358102|NR3C2;nc|ENSG00000151623|P08235-3|NR3C2	nc|ENSG00000151623|P08235-2|NR3C2	nc|ENSG00000151623|P08235-2|NR3C2	MULTI-SECPEP	OvCa9_classI_Rep2	2	530.2928466796875	2	529.762975	1057.5114	-0.54352	-0.00028794	-0.14284	-7.5671E-05	-0.68637	-0.00036361	530.2647191451006	109.71	0.34729	109.54	109.36	109.71	-0.17236					9	6	2	0	0	0	0.027462	1	10320	10320		42.396	0	1	17662			8107	5569	6578	6588	9163	9163					-0.01505913390974456
ELLPKLKMG	9	Unmodified	_ELLPKLKMG_					0	0	0		tr|A0A7D6VPT4|A0A7D6VPT4_9CLOTDUF1189domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00190PE=4SV=1	tr|A0A7D6VPT4|A0A7D6VPT4_9CLOTDUF1189domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00190PE=4SV=1	tr|A0A7D6VPT4|A0A7D6VPT4_9CLOTDUF1189domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00190PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.8078002929688	2	514.81227	1027.60999	-0.66478	-0.00034224	3.7296	0.00192	3.0648	0.0015778	514.8141084772375	39.298	0.5621	39.298	39.107	39.669	0					16	12	2	0	0	0	0.027462	1	2327	2327		29.15	0	1	83523			8108	34796	6579	6589	9164	9164					0.0972873464472741
ELLPVVTVV	9	Unmodified	_ELLPVVTVV_					0	0	0			REV__tr|A0A553SNF2|A0A553SNF2_NIACIBaseplateproteinJ-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24370PE=4SV=1	REV__tr|A0A553SNF2|A0A553SNF2_NIACIBaseplateproteinJ-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24370PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	484.8038635253906	2	484.804968	967.595384	0.80858	0.000392	-3.4602	-0.0016775	-2.6516	-0.0012855	484.80311931217824	65.561	1.2695	62.615	62.35	63.62	-2.9459					49	24	3	0	0	0	0.6653	1	2661	2661		24.203	1.1603	1	183720	+		8109	30416	6580	6590	9165	9165					0.11028985768246002
ELLQAASPRTE	11	Unmodified	_ELLQAASPRTE_					0	0	0			REV__ENSG00000072786|ENST00000176763|STK10	REV__ENSG00000072786|ENST00000176763|STK10	MULTI-MSMS	OvCa9_classI_Rep2	2	405.55230712890625	3	405.550698	1213.63027	0.74305	0.00030134	3.7439	0.0015183	4.4869	0.0018197	405.5521875633834	47.39	1.9857	44.68	44.242	46.228	-2.7097					104	39	4	0	0	0	0.69735	1	2899	2899		30.569	1.0181	1	303990	+		8110	16923	6581	6591	9166	9166					0.031995768382330425
ELLQELAR	8	Unmodified	_ELLQELAR_					0	0	0			REV__nc|ENSG00000165861|Q9HBF4-3|ZFYVE1	REV__nc|ENSG00000165861|Q9HBF4-3|ZFYVE1	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.2596435546875	2	486.279649	970.544745	1.7382	0.00084527	0.3976	0.00019335	2.1358	0.0010386	486.27977424805204	80.752	0.68088	80.752	80.399	81.08	0					29	15	2	0	0	0	0.028476	1	8255	8255		18.324	0	1	1023900	+		8111	21129	6582	6592	9167	9167					0.05829456443234449
ELLQERDIV	9	Unmodified	_ELLQERDIV_					0	0	0		ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	558.8043212890625	2	557.808771	1113.60299	1.4801	0.0008256	-0.44007	-0.00024548	1.04	0.00058012	557.8085378189785	37.609	0.64835	34.716	34.442	35.09	-2.8925					24	12	3	0	0	0	0.027462	1	1425	1425		25.574	10.709	1	76494			8112	4734	6583	6593	9168	9168					0.050730932978467536
ELLQERDIV	9	Unmodified	_ELLQERDIV_					0	0	0		ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	557.808771	1113.60299	-1.3446	-0.00075001	2.5918	0.0014457	1.2472	0.00069572	557.8102467005629	37.769	0.49149	35.059	34.928	35.419	-2.7097	0.17167	0.0027586	NaN	25.574	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16880			8113	4734	6583	6593							0.050730932978467536
ELLQERWKAH	10	Unmodified	_ELLQERWKAH_					0	0	0			REV__tr|A0A553SN60|A0A553SN60_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23855PE=4SV=1	REV__tr|A0A553SN60|A0A553SN60_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23855PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	436.8801574707031	3	437.238566	1308.69387	-1.1489	-0.00050234	-0.33423	-0.00014614	-1.4831	-0.00064848	437.2381490637367	63.007	0.78691	60.263	60.108	60.895	-2.7444					16	14	2	0	0	0	0.02649	1	4816	4816		65.157	4.4666	1	10766	+		8114	30395	6584	6594	9169	9169					0.051869820659931065
ELLQNLLR	8	Unmodified	_ELLQNLLR_					0	0	0		nc|ENSG00000119397|Q7Z7A1-2|CNTRL;nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;ENST00000373851.6_1_9:123874787-123912836:+|nuORF;ENST00000431571.5_1_9:123906333-123914781:+|nuORF	nc|ENSG00000119397|Q7Z7A1-2|CNTRL	nc|ENSG00000119397|Q7Z7A1-2|CNTRL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.84588623046875	2	499.803291	997.59203	1.033	0.00051629	0.32167	0.00016077	1.3547	0.00067706	499.80330248703143	85.532	1.3325	82.886	82.361	83.693	-2.6463					54	26	3	0	0	0	0.028476	1	7221	7221		29.15	8.2026	1	309270			8115	3358	6585	6595	9170	9170					0.09313735714238192
ELLRALRGV	9	Unmodified	_ELLRALRGV_					0	0	0			REV__nc|ENSG00000142733|O95382-3|MAP3K6	REV__nc|ENSG00000142733|O95382-3|MAP3K6	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.8250122070312	2	513.824558	1025.63456	0.64137	0.00032955	-0.47795	-0.00024558	0.16342	8.3967E-05	513.8244834183118	68.041	1.9125	64.55	64.087	66	-3.4902					122	38	5	0	0	0	0.55588	1	5030	5030		37.159	0	1	2120800	+		8116	19805	6586	6596	9171	9171					0.12277130842448969
ELLRAPKRRW	10	Unmodified	_ELLRAPKRRW_					0	0	0			REV__DNAJC1|p.R443W|1|0.1|ENSG00000136770|chr10:21759439-21759439|G/A|missense_variant	REV__DNAJC1|p.R443W|1|0.1|ENSG00000136770|chr10:21759439-21759439|G/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	441.76953125	3	442.270201	1323.78877	-3.4973	-0.0015467	3.7853	0.0016741	0.288	0.00012737	442.2727217540011	162.75	0.32999	162.53	162.31	162.64	-0.22697					15	6	4	0	0	0	0.027233	1	16589	16589		15.333	0	1	118350	+		8117	16320	6587	6597	9172	9172					0.13982960327825822
ELLRARQP	8	Unmodified	_ELLRARQP_					0	0	0			REV__RGL2|p.S642Nfs*30|1|0.03|ENSG00000237441|chr6:33293100-33293101|-/TA|frameshift_variant	REV__RGL2|p.S642Nfs*30|1|0.03|ENSG00000237441|chr6:33293100-33293101|-/TA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.25341796875	2	491.793258	981.571963	0.12931	6.3596E-05	3.763	0.0018506	3.8923	0.0019142	491.7949795316557	63.856	0.9677	60.381	60.012	60.98	-3.475					35	19	2	0	0	0	0.028476	1	4523	4523		37.159	0	1	80632	+		8118	23420	6588	6598	9173	9173					0.08043984774269575
ELLRDQVL	8	Unmodified	_ELLRDQVL_					0	0	0		chr14:103121499-103123437|388|11.02|0.0|20.07|+|ENST00000333007|TNFAIP2,TNFAIP2;ENSG00000185215|ENST00000560869|TNFAIP2	chr14:103121499-103123437|388|11.02|0.0|20.07|+|ENST00000333007|TNFAIP2,TNFAIP2	chr14:103121499-103123437|388|11.02|0.0|20.07|+|ENST00000333007|TNFAIP2,TNFAIP2	MULTI-MSMS	OvCa99_classI_Rep5	1	493.2887268066406	2	493.287474	984.560395	2.6682	0.0013162	-0.97095	-0.00047896	1.6972	0.00083722	493.2869412862471	100.96	0.7081	100.96	100.61	101.32	0					56	16	6	0	0	0	0.35821	1	11212	11212		96.19	13.95	1	8505400			8119	339	6589	6599	9174	9174					0.06749742960278127
ELLRGKIQP	9	Unmodified	_ELLRGKIQP_					0	0	0			REV__ENST00000494072.3_3_1:19186098-19209913:-|nuORF	REV__ENST00000494072.3_3_1:19186098-19209913:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.8348388671875	2	527.324391	1052.63423	-0.2384	-0.00012572	0.5776	0.00030458	0.3392	0.00017887	527.3244845412245	70.307	1.1603	67.737	67.214	68.374	-2.5707					47	22	4	0	0	0	0.027118	1	5563	5563		64.207	14.766	1	117730	+		8120	20614	6590	6600	9175	9175					0.11001711122617053
ELLRGKIQP	9	Unmodified	_ELLRGKIQP_					0	0	0			REV__ENST00000494072.3_3_1:19186098-19209913:-|nuORF	REV__ENST00000494072.3_3_1:19186098-19209913:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	527.324391	1052.63423	-1.6019	-0.00084473	2.9879	0.0015756	1.386	0.00073087	527.325377529814	71.384	1.0261	67.928	67.776	68.802	-3.4563	0.25126	0.0024889	NaN	64.207	35	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153770	+		8121	20614	6590	6600							0.11001711122617053
ELLRHLLLGG	10	Unmodified	_ELLRHLLLGG_					0	0	0		ENST00000571689.1_1_17:5138561-5138627:+|nuORF	ENST00000571689.1_1_17:5138561-5138627:+|nuORF	ENST00000571689.1_1_17:5138561-5138627:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.8214111328125	2	560.84549	1119.67643	2.0655	0.0011584	-0.32261	-0.00018093	1.7429	0.00097747	561.3464863466265	109.23	0.48196	109.23	108.89	109.37	0					20	10	3	0	0	0	0.026802	1	12341	12341		19.997	4.355	1	147790			8122	13906	6591	6601	9176	9176					0.12137686530991232
ELLRIGLSV	9	Unmodified	_ELLRIGLSV_					0	0	0		nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000484403.5_1_21:30439206-30445917:-|nuORF	nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-3|CCT8	MULTI-MSMS	OvCa99_classI_Rep5	1	500.3166809082031	2	500.313492	998.612431	1.9676	0.00098441	0.26689	0.00013353	2.2345	0.0011179	500.3134579831731	117.8	0.55542	117.8	117.56	118.11	0					29	11	3	0	0	0	0.16562	1	13514	13514		82.241	24.429	1	316650			8123	5830	6592	6602	9177	9177					0.11306906374045411
ELLRLGVRLR	10	Unmodified	_ELLRLGVRLR_					0	0	0			REV__nc|ENSG00000180900|Q14160-2|SCRIB	REV__nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	409.6080627441406	3	408.934818	1223.78262	-0.32512	-0.00013295	3.9904	0.0016318	3.6653	0.0014989	409.27114008310934	108.82	0.26086	107.1	106.92	107.18	-1.7256					5	4	2	0	0	0	0.027001	1	9968	9968		28.081	2.0181	1	7084.7	+		8124	22204	6593	6603	9178	9178					0.17968442096298531
ELLRRIRPV	9	Unmodified	_ELLRRIRPV_					0	0	0			REV__nc|ENSG00000179168|Q86UU5-3|GGN	REV__nc|ENSG00000179168|Q86UU5-3|GGN	MULTI-MSMS	OvCa9_classI_Rep2	2	576.3712158203125	2	576.372207	1150.72986	-1.827	-0.001053	1.5956	0.00091967	-0.23133	-0.00013333	576.3730150957791	53.322	1.3909	50.508	50.182	51.573	-2.8139					65	27	4	0	0	0	0.68424	1	3630	3630		21.96	1.013	1	195240	+		8125	22109	6594	6604	9179	9179					0.1605248403348014
ELLRVQAF	8	Unmodified	_ELLRVQAF_					0	0	0			REV__ENSG00000226887|ENST00000443173|ERVMER34-1	REV__ENSG00000226887|ENST00000443173|ERVMER34-1	MULTI-MSMS	OvCa9_classI_Rep3	3	488.2852478027344	2	488.284734	974.554916	-1.3296	-0.0006492	0.69416	0.00033895	-0.63539	-0.00031025	488.28498397664265	100.97	1.7392	99.369	98.706	100.45	-1.6053					76	33	4	0	0	0	0.66057	1	6895	6895		51.335	1.8939	1	591300	+		8126	23373	6595	6605	9180	9180					0.0666206416847217
ELLSDDEVP	9	Unmodified	_ELLSDDEVP_					0	0	0		nc|ENSG00000103199|O60304-2|ZNF500;ENSG00000103199|ENST00000219478|ZNF500	nc|ENSG00000103199|O60304-2|ZNF500	nc|ENSG00000103199|O60304-2|ZNF500	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.79022216796875	2	508.742762	1015.47097	-1.2207	-0.00062101	-0.54689	-0.00027823	-1.7676	-0.00089923	508.74223203740706	42.175	1.8138	39.195	38.696	40.51	-2.9804					75	34	3	0	0	0	0.027462	1	2075	2075		37.159	8.0096	1	113520			8127	2294	6596	6606	9181	9181					-0.036145565097626786
ELLSDDEVP	9	Unmodified	_ELLSDDEVP_					0	0	0		nc|ENSG00000103199|O60304-2|ZNF500;ENSG00000103199|ENST00000219478|ZNF500	nc|ENSG00000103199|O60304-2|ZNF500	nc|ENSG00000103199|O60304-2|ZNF500	MULTI-MATCH	OvCa9_classI_Rep2	2		2	508.742762	1015.47097	0.74432	0.00037867	-2.8555	-0.0014527	-2.1112	-0.0010741	508.74119181385885	42.091	1.2823	39.382	38.98	40.262	-2.7097	0.093292	-0.0012397	NaN	51.335	43	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24581			8128	2294	6596	6606							-0.036145565097626786
ELLSFILDH	9	Unmodified	_ELLSFILDH_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.7689819335938	2	543.795132	1085.57571	2.1098	0.0011473	2.2129	0.0012033	4.3226	0.0023506	543.7962682431523	137.47	0.48389	137.47	137.21	137.69	0					16	9	2	0	0	0	0.027462	1	16038	16038		42.396	7.2441	1	50879			8129	2211	6597	6607	9182	9182					0.03634609757477847
ELLSGHSLLL	10	Unmodified	_ELLSGHSLLL_					0	0	0		ENST00000602307.5_1_3:47454690-47454903:+|nuORF	ENST00000602307.5_1_3:47454690-47454903:+|nuORF	ENST00000602307.5_1_3:47454690-47454903:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	541.3150634765625	2	541.316232	1080.61791	-0.15857	-8.5836E-05	-2.3211	-0.0012564	-2.4797	-0.0013423	541.3147931507731	134.52	0.98869	133.39	133.06	134.05	-1.1226					41	18	3	0	0	0	0.6104	1	10842	10842		40.778	1.5253	1	69775			8130	14235	6598	6608	9183	9183					0.08082585165880118
ELLSKVLEV	9	Unmodified	_ELLSKVLEV_					0	0	0		nc|ENSG00000189157|Q6ZV65-1|FAM47E;ENSG00000189157|ENST00000424749|FAM47E	nc|ENSG00000189157|Q6ZV65-1|FAM47E	nc|ENSG00000189157|Q6ZV65-1|FAM47E	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.3021850585938	2	515.313158	1028.61176	1.2597	0.00064913	1.3306	0.0006857	2.5903	0.0013348	515.3132676764784	112.02	0.73676	112.02	111.65	112.39	0					34	15	3	0	0	0	0.027462	1	12769	12769		42.864	0	1	362130			8131	8541	6599	6609	9184	9184					0.098600669343341
ELLSLGQGAL	10	Unmodified	_ELLSLGQGAL_					0	0	0		ENST00000395878.7_1_16:23582504-23582672:+|nuORF	ENST00000395878.7_1_16:23582504-23582672:+|nuORF	ENST00000395878.7_1_16:23582504-23582672:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.7867736816406	2	500.787307	999.560061	-1.0369	-0.00051928	0.82145	0.00041137	-0.21548	-0.00010791	500.7876294244835	144.59	0.94868	143.15	142.89	143.83	-1.4357					28	17	2	0	0	0	0.45822	1	14184	14184		60.118	8.7828	1	48815			8132	11304	6600	6610	9185	9185					0.060263232404167866
ELLSLGQGAL	10	Unmodified	_ELLSLGQGAL_					0	0	0		ENST00000395878.7_1_16:23582504-23582672:+|nuORF	ENST00000395878.7_1_16:23582504-23582672:+|nuORF	ENST00000395878.7_1_16:23582504-23582672:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	500.787307	999.560061	-2.2184	-0.0011109	1.7788	0.00089079	-0.4396	-0.00022015	500.78810409123196	143.33	0.93779	143.11	142.85	143.79	-0.22696	-0.037993	-3.1307E-05	NaN	60.118	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26359			8133	11304	6600	6610							0.060263232404167866
ELLSLGQGAL	10	Unmodified	_ELLSLGQGAL_					0	0	0		ENST00000395878.7_1_16:23582504-23582672:+|nuORF	ENST00000395878.7_1_16:23582504-23582672:+|nuORF	ENST00000395878.7_1_16:23582504-23582672:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	500.787307	999.560061	-3.305	-0.0016551	2.9152	0.0014599	-0.38979	-0.0001952	500.78867150855365	144.17	1.1866	143.18	142.78	143.97	-0.9903	0.030185	0.0011069	NaN	60.118	41	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46878			8134	11304	6600	6610							0.060263232404167866
ELLSLKEPVSE	11	Unmodified	_ELLSLKEPVSE_					0	0	0			REV__nc|ENSG00000100629|Q6ZU80-1|CEP128	REV__nc|ENSG00000100629|Q6ZU80-1|CEP128	MULTI-SECPEP	OvCa99_classI_Rep5	1	622.3203735351562	2	622.342643	1242.67073	1.4066	0.00087539	-3.2287	-0.0020093	-1.8221	-0.0011339	622.8434145684434	135.67	0.42056	135.67	135.41	135.83	0					16	8	3	0	0	0	0.025656	1	15786	15786		26.063	0	1	187640	+		8135	17440	6601	6611	9186	9186					0.05910498437970091
ELLSSTNL	8	Unmodified	_ELLSSTNL_					0	0	0			REV__nc|ENSG00000120885|P10909-3|CLU	REV__nc|ENSG00000120885|P10909-3|CLU	MULTI-SECPEP	OvCa99_classI_Rep5	1	438.19873046875	2	438.737283	875.460012	1.1866	0.00052062	-0.29394	-0.00012896	0.89269	0.00039166	438.7370543442412	46.37	0.38926	46.37	46.198	46.587	0					13	8	2	0	0	0	0.028476	1	3270	3270		30.504	0	1	77769	+		8136	18519	6602	6612	9187	9187					0.01730085906626755
ELLTEDMTL	9	Unmodified	_ELLTEDMTL_					0	0	0		nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;nc|ENSG00000176225|Q86VV8-4|RTTN;RTTN|p.K1324Nfs*13|1|0.04|ENSG00000176225|chr18:70092736-70092737|-/A|frameshift_variant;nc|ENSG00000176225|Q86VV8-2|RTTN;ENST00000581583.1_1_18:67834153-67872894:-|nuORF;RTTN|p.D511Wfs*23|1|0.04|ENSG00000176225|chr18:70169014-70169015|-/AT|frameshift_variant	nc|ENSG00000176225|Q86VV8-3|RTTN;RTTN|p.D511Wfs*23|1|0.04|ENSG00000176225|chr18:70169014-70169015|-/AT|frameshift_variant	nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.7633666992188	2	532.76264	1063.51073	-0.39698	-0.00021149	1.6132	0.00085945	1.2162	0.00064796	532.763363306674	114.08	2.2167	112.64	111.9	114.12	-1.4461					106	43	4	0	0	0	0.50149	1	10605	10605		42.396	0	1	502590			8137	7592;32794	6603	6613	9188	9188					-0.01848752830687772
ELLTSPAEP	9	Unmodified	_ELLTSPAEP_					0	0	0		ENST00000522653.5_1_5:133481849-133482209:+|nuORF;ENST00000378560.8_2_5:133480506-133482209:+|nuORF;ENST00000524342.5_1_5:133478937-133482209:+|nuORF	ENST00000522653.5_1_5:133481849-133482209:+|nuORF	ENST00000522653.5_1_5:133481849-133482209:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.8082275390625	2	478.75039	955.486227	-2.3417	-0.0011211	-0.85415	-0.00040892	-3.1958	-0.00153	478.74984812776864	37.466	0.54076	34.756	34.583	35.124	-2.7097					17	10	2	0	0	0	0.027456	1	1691	1691		30.504	0	1	29310			8138	11108	6604	6614	9189	9189					0.006703550781026024
ELLVDEEDD	9	Unmodified	_ELLVDEEDD_					0	0	0		ENSG00000111913|ENST00000643898|RIPOR2	ENSG00000111913|ENST00000643898|RIPOR2	ENSG00000111913|ENST00000643898|RIPOR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.7750244140625	2	538.735134	1075.45571	2.4145	0.0013008	3.233	0.0017417	5.6475	0.0030425	538.7369836356878	76.094	0.11938	76.094	75.996	76.115	0					4	2	2	0	0	0	0.027462	1	7606	7606		16.473	1.6083	1	59520			8139	2868	6605	6615	9190	9190					-0.07899468097616591
ELLVIVNKF	9	Unmodified	_ELLVIVNKF_					0	0	0		tr|A0A553SJD2|A0A553SJD2_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_16570PE=3SV=1	tr|A0A553SJD2|A0A553SJD2_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_16570PE=3SV=1	tr|A0A553SJD2|A0A553SJD2_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_16570PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.8270874023438	2	537.831517	1073.64848	0.077826	4.1857E-05	2.563	0.0013785	2.6409	0.0014203	537.8327068719183	93.785	1.6679	91.823	91.476	93.144	-1.9617					46	32	2	0	0	0	0.027441	1	5983	5983		37.159	0	1	329770			8140	33492	6606	6616	9191	9191					0.11460363550895636
ELLVKRID	8	Unmodified	_ELLVKRID_					0	0	0			REV__tr|A0A553SSY8|A0A553SSY8_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04075PE=4SV=1	REV__tr|A0A553SSY8|A0A553SSY8_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04075PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	494.295654296875	2	493.305667	984.596781	-1.2943	-0.00063847	1.4724	0.00072635	0.17814	8.7878E-05	493.30611284696704	91.936	0.75725	89.912	89.332	90.089	-2.0241					36	14	4	0	0	0	0.028476	1	5740	5740		58.782	28.464	1	190750	+		8141	30895	6607	6617	9192	9192					0.10386619857001733
ELLVKVVDV	9	Unmodified	_ELLVKVVDV_					0	0	0			REV__nc|ENSG00000132466|O75179-2|ANKRD17	REV__nc|ENSG00000132466|O75179-2|ANKRD17	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.3152160644531	2	507.3157	1012.61685	-0.45576	-0.00023121	-0.10681	-5.4186E-05	-0.56257	-0.0002854	507.31539890745773	105.64	1.2079	103.63	103.3	104.51	-2.0161					49	23	3	0	0	0	0.22621	1	9611	9611		71.877	5.4482	1	353210	+		8142	19080	6608	6618	9193	9193					0.11104370796954299
ELLVRPLTP	9	Unmodified	_ELLVRPLTP_					0	0	0			REV__nc|ENSG00000167930|Q9H0X4-2|FAM234A	REV__nc|ENSG00000167930|Q9H0X4-2|FAM234A	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.7998657226562	2	519.321317	1036.62808	-0.78166	-0.00040593	-1.5079	-0.0007831	-2.2896	-0.001189	519.3204487058514	86.309	0.40092	84.089	83.936	84.337	-2.2204					11	7	2	0	0	0	0.027462	1	5144	5144		10.866	0	1	19802	+		8143	21319	6609	6619	9194	9194					0.11123192891068356
ELLVSVLPTRD	11	Unmodified	_ELLVSVLPTRD_					0	0	0			REV__ENSG00000073969|ENST00000398238|NSF	REV__ENSG00000073969|ENST00000398238|NSF	MULTI-SECPEP	OvCa99_classI_Rep5	1	622.3233642578125	2	621.358628	1240.7027	1.7522	0.0010887	3.7702	0.0023426	5.5224	0.0034314	621.3608836693293	136.72	1.528	136.72	136.25	137.78	0					47	31	2	0	0	0	0.025487	1	15980	15980		38.754	7.2238	1	141380	+		8144	16944	6610	6620	9195	9195					0.09197910911780127
ELLWALEP	8	Unmodified	_ELLWALEP_					0	0	0		ACOT2|p.G141E|1|0.72|ENSG00000119673|chr14:73569662-73569662|G/A|missense_variant	ACOT2|p.G141E|1|0.72|ENSG00000119673|chr14:73569662-73569662|G/A|missense_variant	ACOT2|p.G141E|1|0.72|ENSG00000119673|chr14:73569662-73569662|G/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.289794921875	2	485.765843	969.517133	-1.3516	-0.00065657	0.86074	0.00041812	-0.49088	-0.00023845	485.7666693504481	96.346	0.40359	94.517	94.32	94.724	-1.8286					10	7	2	0	0	0	0.028476	1	6344	6344		33.516	4.366	1	7029.1			8145	19	6611	6621	9196	9196					0.03115553182988151
ELLWGGPTT	9	Unmodified	_ELLWGGPTT_					0	0	0			REV__ENSG00000120211|ENST00000239316|INSL4	REV__ENSG00000120211|ENST00000239316|INSL4	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.81610107421875	2	487.2531	972.491647	-0.69938	-0.00034078	-3.76	-0.0018321	-4.4594	-0.0021729	487.25126236201356	53.283	0.60751	53.283	53.043	53.651	0					22	13	2	0	0	0	0.027448	1	4273	4273		35.618	8.9254	1	882450	+		8146	18489	6612	6622	9197	9197					0.004300786605767826
ELLWGPRA	8	Unmodified	_ELLWGPRA_					0	0	0		ENSG00000186675|ENST00000373359|MAGEE2	ENSG00000186675|ENST00000373359|MAGEE2	ENSG00000186675|ENST00000373359|MAGEE2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.2677917480469	2	471.263802	940.513051	-0.39655	-0.00018688	0.26288	0.00012389	-0.13367	-6.2995E-05	471.2637819615074	44.22	0.75586	41.212	40.989	41.745	-3.0074					23	14	2	0	0	0	0.028476	1	2169	2169		26.796	0	1	58722			8147	8356	6613	6623	9198	9198					0.04041508479951972
ELLYHQAL	8	Unmodified	_ELLYHQAL_					0	0	0			REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.81890869140625	2	493.768917	985.523281	-1.2922	-0.00063805	-3.472	-0.0017144	-4.7642	-0.0023524	493.7680508417373	62.366	0.34606	59.607	59.434	59.78	-2.7593					9	6	2	0	0	0	0.028476	1	4656	4656		18.324	0	1	15886	+		8148	18712	6614	6624	9199	9199					0.029940714145254788
ELLYPVIHF	9	Unmodified	_ELLYPVIHF_					0	0	0			REV__L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|430|3|anti-sense	REV__L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|430|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.7977905273438	2	565.815867	1129.61718	1.9476	0.001102	-0.014521	-8.216E-06	1.9331	0.0010938	565.8156028062415	111.07	1.0285	111.07	110.71	111.74	0					27	22	2	0	0	0	0.027462	1	12674	12674		33.516	0	1	168620	+		8149	16041	6615	6625	9200	9200					0.05755790516809611
ELLYVGRL	8	Unmodified	_ELLYVGRL_					0	0	0		tr|A0A553SIV8|A0A553SIV8_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_15630PE=3SV=1	tr|A0A553SIV8|A0A553SIV8_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_15630PE=3SV=1	tr|A0A553SIV8|A0A553SIV8_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_15630PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.2513732910156	2	481.78711	961.559667	-0.28608	-0.00013783	0.99334	0.00047858	0.70726	0.00034075	481.7876290730452	43.29	0.4213	43.29	43.1	43.521	0					16	9	2	0	0	0	0.028476	1	2828	2828		24.203	1.1603	1	165690			8150	33431	6616	6626	9201	9201					0.07734948311247081
ELMAGPGH	8	Unmodified	_ELMAGPGH_					0	0	0		nc|ENSG00000140465|P04798-2|CYP1A1;CYP1A1|p.A370Sfs*48|1|0.1|ENSG00000140465|chr15:74721257-74721258|-/T|frameshift_variant;ENSG00000140465|ENST00000379727|CYP1A1;ENSG00000140505|ENST00000343932|CYP1A2	nc|ENSG00000140465|P04798-2|CYP1A1;ENSG00000140505|ENST00000343932|CYP1A2	nc|ENSG00000140465|P04798-2|CYP1A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.7770690917969	2	406.191988	810.369423	2.9103	0.0011821	4.1077	0.0016685	7.018	0.0028507	406.1934203768491	87.509	0.45646	87.509	87.338	87.794	0					15	10	2	0	0	0	0.028476	1	9295	9295		46.766	43.082	1	159360			8151	701;4850	6617	6627	9202	9202					-0.04334661622635849
ELMCGYESL	9	Unmodified	_ELMCGYESL_					0	0	0			REV__nc|ENSG00000170500|Q1L5Z9-2|LONRF2	REV__nc|ENSG00000170500|Q1L5Z9-2|LONRF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.7911987304688	2	522.722461	1043.43037	1.4858	0.00077664	1.8183	0.00095045	3.304	0.0017271	522.7230339350343	102.94	0.33444	102.94	102.81	103.14	0					10	7	2	0	0	0	0.027462	1	11488	11488		16.473	3.514	1	178670	+		8152	21544	6618	6628	9203	9203					-0.08960937425376869
ELMIVIGIL	9	Unmodified	_ELMIVIGIL_					0	0	0		ENSG00000146411|ENST00000275230|SLC2A12	ENSG00000146411|ENST00000275230|SLC2A12	ENSG00000146411|ENST00000275230|SLC2A12	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.2847595214844	2	500.809196	999.60384	-0.044091	-2.2081E-05	1.6554	0.00082906	1.6113	0.00080698	500.81075437028517	81.574	0.86197	79.926	79.265	80.127	-1.6485					24	16	2	0	0	0	0.027462	1	6885	6885		40.573	2.7611	1	30368			8153	5289	6619	6629	9204	9204					0.10402216413206133
ELMIVIGIL	9	Unmodified	_ELMIVIGIL_					0	0	0		ENSG00000146411|ENST00000275230|SLC2A12	ENSG00000146411|ENST00000275230|SLC2A12	ENSG00000146411|ENST00000275230|SLC2A12	MULTI-MATCH	OvCa9_classI_Rep3	3		2	500.809196	999.60384	-1.2575	-0.00062977	4.4001	0.0022036	3.1426	0.0015738	500.81142610702665	82.571	0.59276	80.274	79.887	80.48	-2.2963	0.15852	0.00046739	NaN	50.025	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34209			8154	5289	6619	6629							0.10402216413206133
ELMIVIGIL	9	Unmodified	_ELMIVIGIL_					0	0	0		ENSG00000146411|ENST00000275230|SLC2A12	ENSG00000146411|ENST00000275230|SLC2A12	ENSG00000146411|ENST00000275230|SLC2A12	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	500.809196	999.60384	-0.79926	-0.00040028	3.452	0.0017288	2.6527	0.0013285	500.8112535258066	82.83	0.73234	80.147	79.733	80.466	-2.6829	0.031376	-0.00048225	NaN	50.025	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40253			8155	5289	6619	6629							0.10402216413206133
ELMKDKKMSQ	10	Unmodified	_ELMKDKKMSQ_					0	0	0		tr|A0A553SSE1|A0A553SSE1_NIACIPTSsystemmannose-specificEIIABcomponentOS=NialliacirculansOX=1397GN=CEQ21_02855PE=4SV=1	tr|A0A553SSE1|A0A553SSE1_NIACIPTSsystemmannose-specificEIIABcomponentOS=NialliacirculansOX=1397GN=CEQ21_02855PE=4SV=1	tr|A0A553SSE1|A0A553SSE1_NIACIPTSsystemmannose-specificEIIABcomponentOS=NialliacirculansOX=1397GN=CEQ21_02855PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	618.3206787109375	2	619.317591	1236.62063	1.5685	0.00097141	1.1592	0.00071793	2.7277	0.0016893	619.3188486324748	126.42	1.1997	126.42	125.71	126.91	0					48	25	3	0	0	0	0.026956	1	14623	14623		26.693	4.1133	1	197150			8156	34364	6620	6630	9205	9205					0.011783492368522275
ELMKNKSLSI	10	Unmodified	_ELMKNKSLSI_					0	0	0		tr|A0A7D6VTZ0|A0A7D6VTZ0_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_04825PE=4SV=1	tr|A0A7D6VTZ0|A0A7D6VTZ0_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_04825PE=4SV=1	tr|A0A7D6VTZ0|A0A7D6VTZ0_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_04825PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.326416015625	2	581.828649	1161.64274	1.2644	0.00073566	-3.8366	-0.0022323	-2.5722	-0.0014966	581.8262455870076	127.42	0.9539	127.42	127.23	128.18	0					38	20	3	0	0	0	0.027028	1	14831	14831		31.53	11.533	1	465720			8157	35153	6621	6631	9206	9206					0.06838896976933029
ELMLAGLQNG	10	Unmodified	_ELMLAGLQNG_					0	0	0			REV__tr|A0A553SIS5|A0A553SIS5_NIACIPhosphoglucomutaseOS=NialliacirculansOX=1397GN=CEQ21_15425PE=3SV=1	REV__tr|A0A553SIS5|A0A553SIS5_NIACIPhosphoglucomutaseOS=NialliacirculansOX=1397GN=CEQ21_15425PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.8090209960938	2	523.270967	1044.52738	-1.1624	-0.00060825	1.3601	0.00071168	0.19765	0.00010342	523.7707089829429	80.351	1.8992	77.641	76.791	78.69	-2.7106					81	38	4	0	0	0	0.026665	1	6476	6476		34.173	1.3601	1	420450	+		8158	29923	6622	6632	9207	9207					0.006897928459238756
ELMLLIPSIV	10	Unmodified	_ELMLLIPSIV_					0	0	0		nc|ENSG00000013725|P30203-6|CD6;nc|ENSG00000013725|P30203-7|CD6;nc|ENSG00000013725|P30203-5|CD6;nc|ENSG00000013725|P30203-3|CD6;nc|ENSG00000013725|P30203-4|CD6;nc|ENSG00000013725|P30203-2|CD6;ENSG00000013725|ENST00000313421|CD6	nc|ENSG00000013725|P30203-6|CD6	nc|ENSG00000013725|P30203-6|CD6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.3259887695312	2	564.340861	1126.66717	0.8516	0.00048059	1.2392	0.00069931	2.0908	0.0011799	564.8420383878696	103.29	0.72918	101.1	100.83	101.56	-2.1994					19	13	2	0	0	0	0.026582	1	9354	9354		51.335	0.14276	1	11704			8159	992	6623	6633	9208	9208					0.10890157130438638
ELMPGVLPFG	10	Unmodified	_ELMPGVLPFG_					0	0	0		ENST00000531778.1_1_11:134255049-134255307:-|nuORF	ENST00000531778.1_1_11:134255049-134255307:-|nuORF	ENST00000531778.1_1_11:134255049-134255307:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.2781982421875	2	530.280803	1058.54705	-0.62604	-0.00033198	-3.4613	-0.0018354	-4.0873	-0.0021674	530.2788281945986	123.12	1.4855	121.76	121.11	122.59	-1.3666					60	29	3	0	0	0	0.64063	1	11637	11637		37.159	1.5408	1	110560			8160	13312	6624	6634	9209	9209					0.02012168856686003
ELMPIEEQL	9	Unmodified	_ELMPIEEQL_					0	0	0		tr|A0A7D6ZGV1|A0A7D6ZGV1_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_00215PE=3SV=1	tr|A0A7D6ZGV1|A0A7D6ZGV1_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_00215PE=3SV=1	tr|A0A7D6ZGV1|A0A7D6ZGV1_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_00215PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.8081665039062	2	551.278457	1100.54236	-2.0965	-0.0011558	-1.1924	-0.00065735	-3.289	-0.0018131	551.2776199506649	49.778	0.67707	46.637	46.455	47.132	-3.1416					17	12	2	0	0	0	0.027462	1	2882	2882		26.693	10.22	1	48026			8161	35553	6625	6635	9210	9210					-0.0038876007672570267
ELMPLLKLR	9	Unmodified	_ELMPLLKLR_					0	0	0		nc|ENSG00000198870|Q8NE28-3|STKLD1;ENSG00000198870|ENST00000371957|STKLD1	nc|ENSG00000198870|Q8NE28-3|STKLD1	nc|ENSG00000198870|Q8NE28-3|STKLD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.7957763671875	2	556.846645	1111.67874	2.2578	0.0012573	2.8712	0.0015988	5.129	0.0028561	556.84816085836	85.203	0.45727	85.203	84.923	85.38	0					14	10	2	0	0	0	0.027417	1	8905	8905		65.803	12.866	1	253720			8162	8894	6626	6636	9211	9211					0.12736398944434768
ELMPLTCRGRV	11	Unmodified	_ELMPLTCRGRV_					0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	MULTI-MSMS	OvCa9_classI_Rep3	3	637.8360595703125	2	637.839025	1273.6635	-2.5473	-0.0016248	-1.2998	-0.00082906	-3.8471	-0.0024539	637.8379978583507	142.6	1.7807	141.59	141.08	142.86	-1.0106					85	35	3	0	0	0	0.48738	1	11877	11877		54.776	6.8168	1	112180			8163	3177	6627	6637	9212	9212					0.037611640849263495
ELMSWLTHT	9	Unmodified	_ELMSWLTHT_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.2684326171875	2	559.270967	1116.52738	-0.067653	-3.7836E-05	-3.7396	-0.0020915	-3.8073	-0.0021293	559.2687448692571	42.473	1.552	39.493	39.064	40.616	-2.9804					79	29	4	0	0	0	0.48324	1	1996	1996		44.117	1.7207	1	458750			8164	15005	6628	6638	9213	9213					-0.026222071540814795
ELMYVTLTEL	10	Unmodified	_ELMYVTLTEL_					0	0	0		ENSG00000197386|ENST00000355072|HTT;ENST00000513806.1_1_4:3230649-3237073:+|nuORF	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3154907226562	2	606.31504	1210.61553	-0.080105	-4.8569E-05	-2.2863	-0.0013862	-2.3664	-0.0014348	606.3135743631121	109.02	2.5612	107.29	106.17	108.73	-1.7256					97	49	3	0	0	0	0.55359	1	10020	10020		47.657	3.2801	1	133410			8165	8708	6629	6639	9214	9214					0.018643686458972297
ELMYVTLTEL	10	Unmodified	_ELMYVTLTEL_					0	0	0		ENSG00000197386|ENST00000355072|HTT;ENST00000513806.1_1_4:3230649-3237073:+|nuORF	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	MULTI-MATCH	OvCa9_classI_Rep2	2		2	606.31504	1210.61553	-0.31813	-0.00019289	-2.2588	-0.0013695	-2.5769	-0.0015624	606.3135110383713	107.68	2.1617	107.37	106.18	108.34	-0.30836	0.046136	0.00076447	NaN	47.657	77	43	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126180			8166	8708	6629	6639							0.018643686458972297
ELMYVTLTEL	10	Unmodified	_ELMYVTLTEL_					0	0	0		ENSG00000197386|ENST00000355072|HTT;ENST00000513806.1_1_4:3230649-3237073:+|nuORF	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	MULTI-MATCH	OvCa9_classI_Rep3	3		2	606.31504	1210.61553	1.7169	0.001041	-4.2623	-0.0025843	-2.5454	-0.0015433	606.3124065700516	108.51	2.6013	107.31	106.48	109.08	-1.1978	-0.012132	-0.001665	NaN	47.657	98	49	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138340			8167	8708	6629	6639							0.018643686458972297
ELNAYRTAY	9	Unmodified	_ELNAYRTAY_					0	0	0		tr|A0A553SQL5|A0A553SQL5_NIACITypeIIsecretionsystemproteinGspFdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07875PE=4SV=1	tr|A0A553SQL5|A0A553SQL5_NIACITypeIIsecretionsystemproteinGspFdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07875PE=4SV=1	tr|A0A553SQL5|A0A553SQL5_NIACITypeIIsecretionsystemproteinGspFdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07875PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.2943725585938	2	550.772188	1099.52982	-0.43342	-0.00023871	2.8106	0.001548	2.3772	0.0013093	550.7740067750682	29.923	0.30121	29.923	29.785	30.086	0					13	5	4	0	0	0	0.027462	1	1104	1104		32.812	3.6629	1	45489			8168	34173	6630	6640	9215	9215					-0.015960354247681607
ELNEFHLAYR	10	Unmodified	_ELNEFHLAYR_					0	0	0		tr|A0A7D6ZZ20|A0A7D6ZZ20_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18605PE=4SV=1	tr|A0A7D6ZZ20|A0A7D6ZZ20_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18605PE=4SV=1	tr|A0A7D6ZZ20|A0A7D6ZZ20_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18605PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	431.2333068847656	3	431.219172	1290.63569	-0.77226	-0.00033301	-1.022	-0.00044069	-1.7942	-0.0007737	431.21876341331824	39.987	0.2501	37.277	37.052	37.302	-2.7097					6	4	2	0	0	0	0.026717	1	1989	1989		56.632	0	1	3828.3			8169	35940	6631	6641	9216	9216					0.0019930042069518095
ELNFLRCKRI	10	Unmodified	_ELNFLRCKRI_					0	0	0		ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3	ENSG00000087008|ENST00000356406|ACOX3	ENSG00000087008|ENST00000356406|ACOX3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	431.2335510253906	3	431.248297	1290.72306	0.33288	0.00014355	1.2456	0.00053717	1.5785	0.00068072	431.248680710308	40.319	0.46476	37.365	37.062	37.527	-2.9541					11	8	2	0	0	0	0.026734	1	1736	1736		29.551	0	1	9453.2			8170	1758	6632	6642	9217	9217					0.08932803090647212
ELNFYSNGVL	10	Unmodified	_ELNFYSNGVL_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.7622680664062	2	578.287671	1154.56079	-0.55874	-0.00032311	0.75606	0.00043722	0.19732	0.00011411	578.2880019035814	61.182	0.47245	61.182	60.901	61.374	0					27	10	4	0	0	0	0.026519	1	5405	5405		51.528	0	1	1716400			8171	3405	6633	6643	9218	9218					-0.010308821105127208
ELNGKRIEK	9	Unmodified	_ELNGKRIEK_					0	0	0			REV__tr|A0A553SJI1|A0A553SJI1_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_16615PE=3SV=1	REV__tr|A0A553SJI1|A0A553SJI1_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_16615PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.2958374023438	2	543.81693	1085.61931	-0.41233	-0.00022423	-0.72452	-0.00039401	-1.1369	-0.00061824	543.8168517627147	48.734	0.91788	48.734	48.455	49.373	0					44	20	3	0	0	0	0.027446	1	3620	3620		28.081	10.613	1	2195200	+		8172	30008	6634	6644	9219	9219					0.07992219254606425
ELNIKPLIIN	10	Unmodified	_ELNIKPLIIN_					0	0	0			REV__tr|A0A7D6ZJ64|A0A7D6ZJ64_9CLOTDUF4297domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10040PE=4SV=1	REV__tr|A0A7D6ZJ64|A0A7D6ZJ64_9CLOTDUF4297domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10040PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	583.8595581054688	2	583.860806	1165.70706	0.37379	0.00021824	-2.3223	-0.0013559	-1.9485	-0.0011377	583.859324866827	159.93	1.5367	159.93	159.57	161.11	0					103	30	5	0	0	0	0.67931	1	18721	18721		32.812	4.9302	1	2253700	+		8173	32078	6635	6645	9220	9220					0.13083420125371958
ELNILNKIIM	10	Unmodified	_ELNILNKIIM_					0	0	0		tr|A0A553SPR5|A0A553SPR5_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26875PE=4SV=1	tr|A0A553SPR5|A0A553SPR5_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26875PE=4SV=1	tr|A0A553SPR5|A0A553SPR5_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26875PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	600.3720092773438	2	600.854667	1199.69478	2.474	0.0014865	-1.3792	-0.00082871	1.0948	0.00065779	601.3552681833935	80.06	0.61623	80.06	79.783	80.399	0					23	14	2	0	0	0	0.026782	1	8155	8155		54.776	26.894	1	1142600			8174	34073	6636	6646	9221	9221					0.1029206039067958
ELNKELHI	8	Unmodified	_ELNKELHI_					0	0	0			REV__ENSG00000110318|ENST00000263468|CEP126	REV__ENSG00000110318|ENST00000263468|CEP126	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.9446105957031	2	498.279649	994.544745	-0.68073	-0.0003392	1.2171	0.00060647	0.53639	0.00026727	498.27997545529786	81.238	1.5722	78.915	78.44	80.012	-2.3226					51	30	2	0	0	0	0.028476	1	4581	4581		66.429	0.6261	1	100760	+		8175	17978	6637	6647	9222	9222					0.04725456443236453
ELNNEVNQT	9	Unmodified	_ELNNEVNQT_					0	0	0			REV__tr|A0A553SNW3|A0A553SNW3_NIACIInsulinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25150PE=4SV=1	REV__tr|A0A553SNW3|A0A553SNW3_NIACIInsulinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25150PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.3004150390625	2	530.74891	1059.48327	1.5907	0.00084425	3.8009	0.0020173	5.3915	0.0028616	530.7510190986038	109.01	0.48146	109.01	108.8	109.28	0					18	10	2	0	0	0	0.027411	1	12348	12348		54.776	0	1	225450	+		8176	30464	6638	6648	9223	9223					-0.044095200466927054
ELNNRLKKVQ	10	Unmodified	_ELNNRLKKVQ_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-SECPEP	OvCa99_classI_Rep5	1	413.8944396972656	3	414.582333	1240.72517	0.54259	0.00022495	1.0512	0.00043579	1.5938	0.00066074	414.5823953792815	30.011	0.35147	30.011	29.885	30.236	0					10	6	3	0	0	0	0.026956	1	1118	1118		14.086	4.8742	1	36046			8177	15096	6639	6649	9224	9224					0.11443555100072444
ELNNRMSLC	9	Oxidation (M)	_ELNNRM(Oxidation (M))SLC_		ELNNRM(1)SLC		ELNNRM(85)SLC	0	0	1		ENSG00000049323|ENST00000404816|LTBP1;nc|ENSG00000049323|Q14766-4|LTBP1;nc|ENSG00000049323|Q14766-3|LTBP1;nc|ENSG00000049323|Q14766-2|LTBP1;nc|ENSG00000049323|Q14766-5|LTBP1;KDM3A-LTBP1|1|fusion	ENSG00000049323|ENST00000404816|LTBP1;KDM3A-LTBP1|1|fusion	ENSG00000049323|ENST00000404816|LTBP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.7835693359375	2	548.249708	1094.48486	2.0598	0.0011293	0.967	0.00053016	3.0268	0.0016594	548.7516556430903	120.54	0.4833	120.54	120.44	120.92	0					13	10	2	0	0	0	0.027295	1	13886	13886		84.916	20.708	1	115830			8178	1168;14518	6640	6650	9225	9225		43			-0.05859925553932044
ELNNVLNNQSL	11	Unmodified	_ELNNVLNNQSL_					0	0	0		tr|A0A7D6VMU2|A0A7D6VMU2_9CLOTHeat-inducibletranscriptionrepressorHrcAOS=ClostridiumintestinaleOX=36845GN=hrcAPE=3SV=1	tr|A0A7D6VMU2|A0A7D6VMU2_9CLOTHeat-inducibletranscriptionrepressorHrcAOS=ClostridiumintestinaleOX=36845GN=hrcAPE=3SV=1	tr|A0A7D6VMU2|A0A7D6VMU2_9CLOTHeat-inducibletranscriptionrepressorHrcAOS=ClostridiumintestinaleOX=36845GN=hrcAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	628.8294067382812	2	629.325316	1256.63608	1.5712	0.00098881	-4.4438	-0.0027966	-2.8726	-0.0018078	629.8236748655586	130.93	1.1427	130.93	130.34	131.48	0					30	23	3	0	0	0	0.025656	1	15129	15129		26.063	0	1	81324			8179	34670	6641	6651	9226	9226					0.01802675349904348
ELNNWANQN	9	Unmodified	_ELNNWANQN_					0	0	0			REV__ENSG00000167136|ENST00000372642|ENDOG	REV__ENSG00000167136|ENST00000372642|ENDOG	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.7464599609375	2	551.749244	1101.48394	0.28879	0.00015934	-3.362	-0.001855	-3.0732	-0.0016956	551.7472612402605	122.63	1.2388	121.26	120.91	122.15	-1.3666					42	24	3	0	0	0	0.21231	1	11590	11590		74.255	12.148	1	63691	+		8180	21256	6642	6652	9227	9227					-0.06274680606998118
ELNNWANQN	9	Unmodified	_ELNNWANQN_					0	0	0			REV__ENSG00000167136|ENST00000372642|ENDOG	REV__ENSG00000167136|ENST00000372642|ENDOG	MULTI-MATCH	OvCa9_classI_Rep2	2		2	551.749244	1101.48394	0.06354	3.5058E-05	-2.9963	-0.0016532	-2.9327	-0.0016181	551.7472799093542	121.73	1.138	121.54	121.2	122.34	-0.19718	0.1939	0.00034961	NaN	74.255	38	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28109	+		8181	21256	6642	6652							-0.06274680606998118
ELNNWANQN	9	Unmodified	_ELNNWANQN_					0	0	0			REV__ENSG00000167136|ENST00000372642|ENDOG	REV__ENSG00000167136|ENST00000372642|ENDOG	MULTI-MATCH	OvCa9_classI_Rep3	3		2	551.749244	1101.48394	0.86968	0.00047985	-3.3966	-0.0018741	-2.5269	-0.0013942	551.7471283486157	122.26	1.2595	121.23	120.95	122.21	-1.0286	-0.1144	-9.2147E-05	NaN	74.255	39	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73750	+		8182	21256	6642	6652							-0.06274680606998118
ELNNWANQN	9	Unmodified	_ELNNWANQN_					0	0	0			REV__ENSG00000167136|ENST00000372642|ENDOG	REV__ENSG00000167136|ENST00000372642|ENDOG	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	551.749244	1101.48394	0.28879	0.00015934	-3.362	-0.001855	-3.0732	-0.0016956	551.7472612402605	122.63	1.2388	121.26	120.91	122.15	-1.3666	-0.079501	-5.396E-05	NaN	74.255	42	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63691	+		8183	21256	6642	6652							-0.06274680606998118
ELNPDFIEQV	10	Unmodified	_ELNPDFIEQV_					0	0	0		ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	601.833251953125	2	602.298236	1202.58192	2.7643	0.0016649	1.5791	0.0009511	4.3434	0.002616	602.2991058656592	75.135	1.1545	75.135	74.841	75.996	0					59	28	3	0	0	0	0.026714	1	7514	7514		42.864	7.246	1	6866900			8184	6211	6643	6653	9228	9228					-0.011269168016724507
ELNPEQSKLF	10	Unmodified	_ELNPEQSKLF_					0	0	0		ENSG00000100425|ENST00000404760|BRD1	ENSG00000100425|ENST00000404760|BRD1	ENSG00000100425|ENST00000404760|BRD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	602.7987060546875	2	602.814053	1203.61355	0.99099	0.00059738	-0.10919	-6.5823E-05	0.8818	0.00053156	602.8142854949209	114.95	0.32867	114.95	114.74	115.07	0					9	6	2	0	0	0	0.026867	1	13131	13131		42.864	19.342	1	102800			8185	2066	6644	6654	9229	9229					0.01989075952269559
ELNQLFVLMSL	11	Unmodified	_ELNQLFVLMSL_					0	0	0			REV__ENST00000338435.8_2_2:191792170-191795208:+|nuORF	REV__ENST00000338435.8_2_2:191792170-191795208:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.2413330078125	3	436.240696	1305.70026	0.22667	9.8884E-05	0.41471	0.00018091	0.64138	0.0002798	436.24089196043764	21.376	1.5844	20.038	19.646	21.231	-1.3386					77	31	3	0	0	0	0.70315	1	150	150		28.577	0.93281	1	808510	+		8186	24610	6645	6655	9230	9230					0.05963739182493555
ELNQRGLLC	9	Unmodified	_ELNQRGLLC_					0	0	0		nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000168056|ENST00000301873|LTBP3	nc|ENSG00000168056|Q9NS15-2|LTBP3	nc|ENSG00000168056|Q9NS15-2|LTBP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.30419921875	2	523.276583	1044.53861	-0.88288	-0.00046199	-2.9543	-0.0015459	-3.8372	-0.0020079	523.2751804648666	54.839	0.4297	54.839	54.505	54.935	0					10	9	2	0	0	0	0.027462	1	4445	4445		17.365	0	1	72108			8187	6870	6646	6656	9231	9231					0.01812614940081403
ELNRTLKKM	9	Unmodified	_ELNRTLKKM_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000460638.1_1_22:38282753-38284468:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-SECPEP	OvCa9_classI_Rep2	2	567.3199462890625	2	566.828983	1131.64341	-1.2057	-0.00068341	-2.4116	-0.0013669	-3.6172	-0.0020503	566.8276097850685	84.397	1.6725	82.851	82.122	83.795	-1.5462					54	32	3	0	0	0	0.027017	1	7294	7294		93.195	18.94	1	209050			8188	2012	6647	6657	9232	9232					0.08285736416632972
ELNRTLKKM	9	Unmodified	_ELNRTLKKM_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF;ENST00000460638.1_1_22:38282753-38284468:+|nuORF;ENST00000495197.1_1_10:38368986-38369799:-|nuORF	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.3213500976562	2	566.828983	1131.64341	2.0914	0.0011855	-4.435	-0.0025139	-2.3436	-0.0013284	566.8261456520943	85.735	1.6738	83.088	82.167	83.841	-2.6463					67	33	3	0	0	0	0.027418	1	7246	7246		62.107	30.578	1	147640			8189	2012	6647	6657	9233	9233					0.08285736416632972
ELNTLKNVGK	10	Unmodified	_ELNTLKNVGK_					0	0	0			REV__nc|ENSG00000112701|Q9GZR1-2|SENP6	REV__nc|ENSG00000112701|Q9GZR1-2|SENP6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.8455200195312	2	558.324588	1114.63462	-0.1309	-7.3087E-05	-0.47874	-0.00026729	-0.60965	-0.00034038	558.324135391808	88.911	0.64687	86.308	85.933	86.58	-2.6027					27	12	3	0	0	0	0.026826	1	7616	7616		22.58	0	1	39148	+		8190	18113	6648	6658	9234	9234					0.081890860518115
ELNWIKVL	8	Unmodified	_ELNWIKVL_					0	0	0			REV__VPS11|p.H291Tfs*36|1|0.04|ENSG00000160695|chr11:119081155-119081155|C/-|frameshift_variant	REV__VPS11|p.H291Tfs*36|1|0.04|ENSG00000160695|chr11:119081155-119081155|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.26788330078125	2	507.80276	1013.59097	-2.655	-0.0013482	-2.5317	-0.0012856	-5.1866	-0.0026338	507.80133764787234	88.161	1.3041	85.558	85.179	86.483	-2.6027					62	25	3	0	0	0	0.028476	1	7519	7519		68.787	21.129	1	104270	+		8191	20669	6649	6659	9235	9235					0.08471521345325073
ELPAFLRR	8	Unmodified	_ELPAFLRR_					0	0	0		chr14:103130415-103131639|89|21.71|0.12|7.5|+|1|TNFAIP2,TNFAIP2|1	chr14:103130415-103131639|89|21.71|0.12|7.5|+|1|TNFAIP2,TNFAIP2|1	chr14:103130415-103131639|89|21.71|0.12|7.5|+|1|TNFAIP2,TNFAIP2|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.2880859375	2	501.298176	1000.5818	1.3589	0.00068123	-0.57213	-0.00028681	0.78681	0.00039442	501.29766435079506	101.35	0.79507	101.35	100.94	101.73	0					26	18	2	0	0	0	0.028476	1	11220	11220		38.806	4.6336	1	267340			8192	340	6650	6660	9236	9236					0.08153172779668694
ELPEDDANLL	10	Unmodified	_ELPEDDANLL_					0	0	0		ENST00000495881.1_1_1:156255017-156255866:+|nuORF;ENSG00000163472|ENST00000405535|TMEM79	ENST00000495881.1_1_1:156255017-156255866:+|nuORF	ENST00000495881.1_1_1:156255017-156255866:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.3047485351562	2	564.774593	1127.53463	3.6341	0.0020524	-0.97412	-0.00055016	2.66	0.0015023	564.7738562800828	97.421	0.6452	97.421	97.135	97.78	0					45	14	4	0	0	0	0.026659	1	10686	10686		45.972	0	1	3868600			8193	6312	6651	6661	9237	9237					-0.02403196072668834
ELPEGEEV	8	Unmodified	_ELPEGEEV_					0	0	0		tr|A0A553SIJ0|A0A553SIJ0_NIACIPeptidaseS8OS=NialliacirculansOX=1397GN=CEQ21_14910PE=3SV=1	tr|A0A553SIJ0|A0A553SIJ0_NIACIPeptidaseS8OS=NialliacirculansOX=1397GN=CEQ21_14910PE=3SV=1	tr|A0A553SIJ0|A0A553SIJ0_NIACIPeptidaseS8OS=NialliacirculansOX=1397GN=CEQ21_14910PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	451.7262878417969	2	451.211098	900.407643	-0.053487	-2.4134E-05	-1.5325	-0.00069149	-1.586	-0.00071562	451.2103414021594	43.249	0.93877	43.249	43.057	43.995	0					30	21	2	0	0	0	0.028476	1	2876	2876		25.45	0	1	455440			8194	33385	6652	6662	9238	9238					-0.04654497226977128
ELPEGYKKP	9	Unmodified	_ELPEGYKKP_					0	0	0		tr|A0A7D6VS20|A0A7D6VS20_9CLOTPhosphoribosylformylglycinamidinecyclo-ligaseOS=ClostridiumintestinaleOX=36845GN=purMPE=3SV=1	tr|A0A7D6VS20|A0A7D6VS20_9CLOTPhosphoribosylformylglycinamidinecyclo-ligaseOS=ClostridiumintestinaleOX=36845GN=purMPE=3SV=1	tr|A0A7D6VS20|A0A7D6VS20_9CLOTPhosphoribosylformylglycinamidinecyclo-ligaseOS=ClostridiumintestinaleOX=36845GN=purMPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.3171997070312	2	530.787307	1059.56006	0.55258	0.0002933	2.2385	0.0011882	2.7911	0.0014815	530.7881585147398	160.88	0.70424	160.88	160.56	161.26	0					30	13	3	0	0	0	0.027447	1	18900	18900		39.253	12.56	1	93115			8195	34977	6653	6663	9239	9239					0.03266323240427482
ELPEMRRRWRR	11	Unmodified	_ELPEMRRRWRR_					0	0	0			REV__nc|ENSG00000135636|O75923-3|DYSF	REV__nc|ENSG00000135636|O75923-3|DYSF	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.31689453125	3	528.95992	1583.85793	-1.0264	-0.00054291	-3.1417	-0.0016618	-4.168	-0.0022047	529.2923717186804	65.962	0.19159	65.962	65.867	66.059	0					7	4	2	0	0	0	0.026534	1	6100	6100		1.3219	0	1	418990	+		8196	28870	6654	6664	9240	9240					0.08935676285068439
ELPEQHKR	8	Unmodified	_ELPEQHKR_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6;ENST00000586702.1_1_19:11310175-11313198:-|nuORF	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.7562866210938	2	518.780348	1035.54614	0.74186	0.00038486	1.9007	0.00098604	2.6425	0.0013709	518.7813065970557	83.357	0.59358	83.357	83.12	83.714	0					21	13	2	0	0	0	0.028476	1	8696	8696		38.806	8.3025	1	185640			8197	3959	6655	6665	9241	9241					0.029790905319941885
ELPGILMGL	9	Unmodified	_ELPGILMGL_					0	0	0		SLC6A7|p.L538P|1|0.08|ENSG00000011083|chr5:150205535-150205535|T/C|missense_variant	SLC6A7|p.L538P|1|0.08|ENSG00000011083|chr5:150205535-150205535|T/C|missense_variant	SLC6A7|p.L538P|1|0.08|ENSG00000011083|chr5:150205535-150205535|T/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.8143310546875	2	471.770071	941.52559	1.6704	0.00078802	-0.79599	-0.00037552	0.87437	0.0004125	471.7696835374905	67.342	0.59566	63.852	63.541	64.136	-3.4902					20	11	3	0	0	0	0.027462	1	4915	4915		18.324	0	1	34860			8198	32835	6656	6666	9242	9242					0.05248783827983061
ELPGLTLI	8	Unmodified	_ELPGLTLI_					0	0	0		ENST00000580840.1_2_17:29227507-29227552:-|nuORF	ENST00000580840.1_2_17:29227507-29227552:-|nuORF	ENST00000580840.1_2_17:29227507-29227552:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	428.26153564453125	2	428.262936	854.51132	-2.5111	-0.0010754	-0.44999	-0.00019271	-2.9611	-0.0012681	428.26264584865925	144.43	1.5889	143.46	143.1	144.69	-0.97301					79	31	4	0	0	0	0.75241	1	12048	12048		25.45	2.4135	1	839380			8199	13989	6657	6667	9243	9243					0.0782445467133357
ELPGPAER	8	Unmodified	_ELPGPAER_					0	0	0			REV__ENSG00000167394|ENST00000300849|ZNF668	REV__ENSG00000167394|ENST00000300849|ZNF668	MULTI-SECPEP	OvCa99_classI_Rep5	1	434.7810363769531	2	434.729792	867.445031	0.61764	0.00026851	-0.10912	-4.7437E-05	0.50852	0.00022107	434.7293606883414	56.951	0.56205	56.951	56.702	57.264	0					23	12	4	0	0	0	0.028476	1	4778	4778		68.787	22.835	1	380740	+		8200	21274	6658	6668	9244	9244					0.006006388292917109
ELPGRDQPY	9	Unmodified	_ELPGRDQPY_					0	0	0		ENSG00000092445|ENST00000263798|TYRO3	ENSG00000092445|ENST00000263798|TYRO3	ENSG00000092445|ENST00000263798|TYRO3	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.8123168945312	2	537.764363	1073.51417	-0.069459	-3.7352E-05	4.0401	0.0021726	3.9707	0.0021353	537.766614487446	71.063	0.99589	71.063	70.839	71.835	0					49	24	3	0	0	0	0.027462	1	6954	6954		25.574	0	1	1980200			8201	1895	6659	6669	9245	9245					-0.019643219418185254
ELPGTRGRRTL	11	Unmodified	_ELPGTRGRRTL_					0	0	0		ENST00000559000.5_1_15:57210403-57210766:-|nuORF	ENST00000559000.5_1_15:57210403-57210766:-|nuORF	ENST00000559000.5_1_15:57210403-57210766:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	629.3641357421875	2	628.36511	1254.71567	2.3926	0.0015034	2.9096	0.0018283	5.3023	0.0033318	628.3666178378046	87.734	0.5816	87.734	87.463	88.044	0					15	13	2	0	0	0	0.025487	1	9268	9268		25.126	0	1	292380			8202	13710	6660	6670	9246	9246					0.09849786814561412
ELPHNCIEQPQ	11	Unmodified	_ELPHNCIEQPQ_					0	0	0		nc|ENSG00000163312|Q8TDG4-4|HELQ;nc|ENSG00000163312|Q8TDG4-2|HELQ;ENSG00000163312|ENST00000295488|HELQ	nc|ENSG00000163312|Q8TDG4-4|HELQ	nc|ENSG00000163312|Q8TDG4-4|HELQ	MULTI-SECPEP	OvCa9_classI_Rep2	2	436.8805236816406	3	436.539805	1306.59759	-0.61282	-0.00026752	-2.3842	-0.0010408	-2.997	-0.0013083	436.5399416696263	63.648	0.3176	60.903	60.79	61.108	-2.7444					8	5	2	0	0	0	0.02525	1	4829	4829		55.721	20.569	1	11218			8203	6286	6661	6671	9247	9247					-0.04344953556278597
ELPHSGKTE	9	Unmodified	_ELPHSGKTE_					0	0	0		ENST00000233813.4_1_2:217540303-217540537:-|nuORF	ENST00000233813.4_1_2:217540303-217540537:-|nuORF	ENST00000233813.4_1_2:217540303-217540537:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.8047790527344	2	499.251089	996.487624	-0.40537	-0.00020238	-0.49918	-0.00024922	-0.90456	-0.0004516	499.2511193644037	58.869	0.45541	55.477	55.249	55.705	-3.392					13	8	2	0	0	0	0.027452	1	3919	3919		49.536	3.5638	1	34048			8204	9734	6662	6672	9248	9248					-0.010760108331396623
ELPKGPAFP	9	Unmodified	_ELPKGPAFP_					0	0	0			REV__ENSG00000185958|ENST00000327337|FAM186A	REV__ENSG00000185958|ENST00000327337|FAM186A	MULTI-SECPEP	OvCa9_classI_Rep3	3	477.2745666503906	2	478.26601	954.517468	0.025076	1.1993E-05	3.8791	0.0018553	3.9042	0.0018673	478.2677338607534	78.125	1.5859	75.772	75.253	76.839	-2.3527					83	31	3	0	0	0	0.027441	1	4149	4149		40.778	0	1	417530	+		8205	22548	6663	6673	9249	9249					0.0383897290286086
ELPKHYFSF	9	Unmodified	_ELPKHYFSF_					0	0	0		ENSG00000197885|ENST00000425478|NKIRAS1	ENSG00000197885|ENST00000425478|NKIRAS1	ENSG00000197885|ENST00000425478|NKIRAS1	MULTI-MSMS	OvCa99_classI_Rep5	1	584.297119140625	2	584.295299	1166.57605	1.5954	0.00093219	1.0792	0.00063056	2.6746	0.0015627	584.2957748486141	90.595	0.9899	90.595	90.382	91.372	0					45	24	2	0	0	0	0.041116	1	9726	9726		125.81	40.653	1	3445200			8206	8757	6664	6674	9250	9250					-0.0005797052267553227
ELPKLVPQ	8	Unmodified	_ELPKLVPQ_					0	0	0			REV__ENSG00000197136|ENST00000355703|PCNX3	REV__ENSG00000197136|ENST00000355703|PCNX3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.7619323730469	2	462.28166	922.548768	-1.2773	-0.00059046	3.194	0.0014765	1.9167	0.00088606	462.28253025586326	80.637	0.24045	77.926	77.762	78.003	-2.7106					5	4	2	0	0	0	0.028476	1	6578	6578		26.796	0	1	16341	+		8207	22895	6665	6675	9251	9251					0.08439545936948889
ELPKREHL	8	Unmodified	_ELPKREHL_					0	0	0		nc|ENSG00000152457|Q96SD1-2|DCLRE1C;nc|ENSG00000152457|Q96SD1-3|DCLRE1C;ENSG00000152457|ENST00000378278|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.7544860839844	2	511.293091	1020.57163	-0.9367	-0.00047893	-0.73582	-0.00037622	-1.6725	-0.00085515	511.29255737708473	65.673	0.55914	65.673	65.385	65.945	0					31	13	3	0	0	0	0.028476	1	6078	6078		33.516	3.0119	1	1951800			8208	5624	6666	6676	9252	9252					0.06216565054421608
ELPKREHL	8	Unmodified	_ELPKREHL_					0	0	0		nc|ENSG00000152457|Q96SD1-2|DCLRE1C;nc|ENSG00000152457|Q96SD1-3|DCLRE1C;ENSG00000152457|ENST00000378278|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	MULTI-MATCH	OvCa9_classI_Rep2	2		2	511.293091	1020.57163	-1.2088	-0.00061806	0.81979	0.00041915	-0.38904	-0.00019891	511.2933957825059	68.282	0.83905	65.661	65.278	66.118	-2.6203	0.027537	0.0017073	NaN	25.45	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47059			8209	5624	6666	6676							0.06216565054421608
ELPKREHL	8	Unmodified	_ELPKREHL_					0	0	0		nc|ENSG00000152457|Q96SD1-2|DCLRE1C;nc|ENSG00000152457|Q96SD1-3|DCLRE1C;ENSG00000152457|ENST00000378278|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	nc|ENSG00000152457|Q96SD1-2|DCLRE1C	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	511.293091	1020.57163	-0.45098	-0.00023058	-1.7918	-0.00091614	-2.2428	-0.0011467	511.2923393732838	69.057	0.97977	65.567	65.212	66.192	-3.4902	-0.066503	-0.00096331	NaN	25.45	51	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166270			8210	5624	6666	6676							0.06216565054421608
ELPKVIQLK	9	Unmodified	_ELPKVIQLK_					0	0	0			REV__nc|ENSG00000182606|Q9UPV9-3|TRAK1	REV__nc|ENSG00000182606|Q9UPV9-3|TRAK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.7255249023438	2	534.344792	1066.67503	-1.3853	-0.00074024	-1.3649	-0.00072933	-2.7502	-0.0014696	534.3439811220052	65.379	1.3063	61.894	61.552	62.858	-3.4854					59	26	3	0	0	0	0.027462	1	4820	4820		36.447	3.6343	1	163310	+		8211	29041	6667	6677	9253	9253					0.1443605244223818
ELPLDELLA	9	Unmodified	_ELPLDELLA_					0	0	0			REV__tr|A0A553SGK2|A0A553SGK2_NIACISugarkinaseOS=NialliacirculansOX=1397GN=CEQ21_11045PE=3SV=1	REV__tr|A0A553SGK2|A0A553SGK2_NIACISugarkinaseOS=NialliacirculansOX=1397GN=CEQ21_11045PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	506.7829284667969	2	506.78169	1011.54883	1.1254	0.00057034	-1.0789	-0.00054675	0.046535	2.3583E-05	506.78086788889084	150.42	1.3541	150.42	149.89	151.25	0					55	26	3	0	0	0	0.38529	1	17612	17612		53.351	5.4358	1	118220	+		8212	29710	6668	6678	9254	9254					0.04351501146288683
ELPLGHLEG	9	Unmodified	_ELPLGHLEG_					0	0	0		ENST00000513442.1_1_5:180338577-180375566:+|nuORF	ENST00000513442.1_1_5:180338577-180375566:+|nuORF	ENST00000513442.1_1_5:180338577-180375566:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	483.29168701171875	2	482.758549	963.502546	1.5218	0.00073467	-1.6039	-0.00077431	-0.082102	-3.9635E-05	482.757653484713	90.238	2.7763	88.936	87.642	90.418	-1.302					82	54	3	0	0	0	0.027462	1	7907	7907		45.952	0	1	153240			8213	13012	6669	6679	9255	9255					0.019334810348709652
ELPLLKFL	8	Unmodified	_ELPLLKFL_					0	0	0		nc|ENSG00000165409|P16473|TSHR;ENSG00000165409|ENST00000298171|TSHR;nc|ENSG00000165409|P16473-2|TSHR;nc|ENSG00000165409|P16473-3|TSHR	nc|ENSG00000165409|P16473|TSHR	nc|ENSG00000165409|P16473|TSHR	MULTI-MSMS	OvCa9_classI_Rep2	2	486.8100280761719	2	486.810054	971.605554	1.2422	0.00060471	-1.0668	-0.00051931	0.17542	8.5394E-05	486.80935668338475	129.16	1.5814	128.93	128.62	130.21	-0.22696					73	31	4	0	0	0	0.68714	1	12701	12701		45.952	0	1	189380			8214	6559	6670	6680	9256	9256					0.11861593493460987
ELPLPDAGTA	10	Unmodified	_ELPLPDAGTA_					0	0	0			REV__ENSG00000145362|ENST00000357077|ANK2	REV__ENSG00000145362|ENST00000357077|ANK2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.7611083984375	2	492.25584	982.497126	-0.49563	-0.00024398	-4.3513	-0.0021419	-4.8469	-0.0023859	492.255190976322	69.95	0.48537	66.468	66.153	66.639	-3.4812					16	9	4	0	0	0	0.026688	1	5242	5242		19.104	0	1	29502	+		8215	19961	6671	6681	9257	9257					0.0051775745238273885
ELPLVLLALV	10	Unmodified	_ELPLVLLALV_					0	0	0		nc|ENSG00000165623|P07492-2|GRP;nc|ENSG00000165623|P07492-3|GRP;ENSG00000134443|ENST00000256857|GRP	nc|ENSG00000165623|P07492-2|GRP	nc|ENSG00000165623|P07492-2|GRP	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.7726440429688	2	540.357368	1078.70018	-0.10098	-5.4564E-05	-2.7712	-0.0014975	-2.8722	-0.001552	540.3557189754781	96.792	1.8782	94.963	94.521	96.399	-1.8286					93	36	4	0	0	0	0.027084	1	6551	6551		24.203	11.996	1	355520			8216	4298	6672	6682	9258	9258					0.16398107244799576
ELPMIWWI	8	Unmodified	_ELPMIWWI_					0	0	0		KANK1|p.N567I|1|0.12|ENSG00000107104|chr9:712466-712466|A/T|missense_variant	KANK1|p.N567I|1|0.12|ENSG00000107104|chr9:712466-712466|A/T|missense_variant	KANK1|p.N567I|1|0.12|ENSG00000107104|chr9:712466-712466|A/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.8148803710938	2	544.285889	1086.55722	1.5837	0.00086198	2.8143	0.0015318	4.398	0.0023938	544.286883443076	92.473	0.62898	92.473	92.174	92.803	0					31	12	4	0	0	0	0.028476	1	9965	9965		57.453	2.6763	1	1398200			8217	14515	6673	6683	9259	9259					0.017407765819143606
ELPMPEPS	8	Unmodified	_ELPMPEPS_					0	0	0			REV__nc|ENSG00000132768|Q9BQC3-3|DPH2	REV__nc|ENSG00000132768|Q9BQC3-3|DPH2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.7713928222656	2	450.212586	898.410619	-0.1043	-4.6959E-05	2.9897	0.001346	2.8854	0.0012991	450.21397984734165	95.908	0.6084	93.483	93.304	93.913	-2.4256					17	11	2	0	0	0	0.028476	1	8441	8441		40.573	12.318	1	31360	+		8218	19105	6674	6684	9260	9260					-0.042649453738249576
ELPMPEPS	8	Unmodified	_ELPMPEPS_					0	0	0			REV__nc|ENSG00000132768|Q9BQC3-3|DPH2	REV__nc|ENSG00000132768|Q9BQC3-3|DPH2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	450.212586	898.410619	-0.39325	-0.00017704	4.0044	0.0018028	3.6112	0.0016258	450.2143425033709	95.045	0.70155	93.149	92.864	93.565	-1.8956	-0.1668	0.00037219	NaN	31.955	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21494	+		8219	19105	6674	6684							-0.042649453738249576
ELPPQVFSQL	10	Unmodified	_ELPPQVFSQL_					0	0	0		ENSG00000178772|ENST00000323830|CPN2	ENSG00000178772|ENST00000323830|CPN2	ENSG00000178772|ENST00000323830|CPN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.841796875	2	579.313689	1156.61282	0.64522	0.00037379	2.6646	0.0015436	3.3098	0.0019174	579.3152664976695	114.11	0.50108	114.11	113.88	114.38	0					14	10	2	0	0	0	0.026826	1	12995	12995		29.17	1.0886	1	111130			8220	7773	6675	6685	9261	9261					0.04078281303259246
ELPPQVFSQL	10	Unmodified	_ELPPQVFSQL_					0	0	0		ENSG00000178772|ENST00000323830|CPN2	ENSG00000178772|ENST00000323830|CPN2	ENSG00000178772|ENST00000323830|CPN2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	579.313689	1156.61282	-0.23295	-0.00013495	0.3708	0.00021481	0.13784	7.9855E-05	579.3139424920125	113.96	0.54226	113.85	113.61	114.16	-0.11777	-0.13294	-0.0013625	NaN	16.717	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15845			8221	7773	6675	6685							0.04078281303259246
ELPQNQQDSGT	11	Unmodified	_ELPQNQQDSGT_					0	0	0		ENSG00000255378|ENST00000528972|PRR23D2;ENSG00000255251|ENST00000533250|PRR23D1	ENSG00000255378|ENST00000528972|PRR23D2	ENSG00000255378|ENST00000528972|PRR23D2	MULTI-SECPEP	OvCa99_classI_Rep5	1	406.1979675292969	3	406.186196	1215.53676	0.78497	0.00031884	-4.272	-0.0017352	-3.4871	-0.0014164	406.18506097447704	48.286	0.29521	48.286	48.16	48.455	0					11	6	2	0	0	0	0.025294	1	3550	3550		35.496	9.6039	1	506090			8222	9453	6676	6686	9262	9262					-0.062387673348666794
ELPREMQF	8	Unmodified	_ELPREMQF_					0	0	0			REV__ENSG00000188033|ENST00000311437|ZNF490	REV__ENSG00000188033|ENST00000311437|ZNF490	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.2420654296875	2	525.257859	1048.50117	-0.36308	-0.00019071	3.3926	0.001782	3.0295	0.0015913	525.7637097829612	64.427	3.1646	60.952	60.49	63.655	-3.475					179	64	5	0	0	0	0.028476	1	4799	4799		35.618	0	1	5640000	+		8223	22684	6677	6687	9263	9263					-0.021144763255506405
ELPRKQGGYG	10	Unmodified	_ELPRKQGGYG_					0	0	0			REV__ENSG00000162613|ENST00000370768|FUBP1	REV__ENSG00000162613|ENST00000370768|FUBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	552.796142578125	2	552.793455	1103.57236	0.10466	5.7858E-05	0.9825	0.00054312	1.0872	0.00060097	552.7938361422922	62.751	1.2496	62.751	62.165	63.414	0					95	30	4	0	0	0	0.48198	1	5562	5562		56.721	1.9987	1	8034000	+		8224	20753	6678	6688	9264	9264					0.024713597034860868
ELPSTIILF	9	Unmodified	_ELPSTIILF_					0	0	0			REV__ENST00000478188.5_1_4:57883363-57883849:+|nuORF	REV__ENST00000478188.5_1_4:57883363-57883849:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.3187255859375	2	516.802426	1031.5903	1.3024	0.0006731	1.2218	0.00063145	2.5243	0.0013046	516.8041197104178	113.76	0.26099	112.69	112.56	112.82	-1.0753					6	4	2	0	0	0	0.027462	1	8383	8383		25.45	0	1	6887.1	+		8225	26407	6679	6689	9265	9265					0.07576681905629812
ELPSWMEGG	9	Unmodified	_ELPSWMEGG_					0	0	0			REV__ENST00000540710.5_1_12:6861487-6861860:-|nuORF	REV__ENST00000540710.5_1_12:6861487-6861860:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.2971496582031	2	503.220943	1004.42733	-0.14016	-7.0531E-05	-2.466	-0.0012409	-2.6061	-0.0013115	503.2197671755716	65.188	0.51222	65.188	64.955	65.467	0					18	12	2	0	0	0	0.027462	1	5983	5983		37.159	0.13063	1	242050	+		8226	27358	6680	6690	9266	9266					-0.07470444487864825
ELPTRDVQI	9	Unmodified	_ELPTRDVQI_					0	0	0			REV__TUBGCP5|p.S675Lfs*14|1|0.04|ENSG00000275835|chr15:23010066-23010067|-/CTTGCTCTGTCGCCCAGGCTGGAGTGCAG|frameshift_variant	REV__TUBGCP5|p.S675Lfs*14|1|0.04|ENSG00000275835|chr15:23010066-23010067|-/CTTGCTCTGTCGCCCAGGCTGGAGTGCAG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.2457275390625	2	535.795663	1069.57677	-0.89216	-0.00047801	-0.21452	-0.00011494	-1.1067	-0.00059296	535.7959037829421	114.48	0.59167	114.37	114.06	114.65	-0.11777					14	11	2	0	0	0	0.027441	1	10873	10873		49.442	12.282	1	23364	+		8227	32738	6681	6691	9267	9267					0.04476824126390966
ELPTYPTNS	9	Unmodified	_ELPTYPTNS_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-7|BLTP1;REV__nc|ENSG00000138688|Q2LD37-6|BLTP1	REV__nc|ENSG00000138688|Q2LD37-6|BLTP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.8041076660156	2	511.245472	1020.47639	-2.0776	-0.0010622	4.121	0.0021068	2.0434	0.0010447	511.24766852849103	107.7	0.67885	105.82	105.49	106.16	-1.8784					15	13	2	0	0	0	0.027462	1	9852	9852		15.642	1.8665	1	28341	+		8228	19560;28886	6682	6692	9268	9268					-0.033028329272838164
ELPVLIVLP	9	Unmodified	_ELPVLIVLP_					0	0	0			REV__ENST00000343979.5_1_19:12299097-12299355:+|nuORF	REV__ENST00000343979.5_1_19:12299097-12299355:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.7829895019531	2	496.823161	991.631769	-0.71789	-0.00035667	-2.2316	-0.0011087	-2.9495	-0.0014654	496.82192010068536	65.488	0.55934	65.488	65.231	65.79	0					21	13	2	0	0	0	0.027462	1	6059	6059		35.201	9.7505	1	1016800	+		8229	24676	6683	6693	9269	9269					0.13561862664937507
ELPVLIVLP	9	Unmodified	_ELPVLIVLP_					0	0	0			REV__ENST00000343979.5_1_19:12299097-12299355:+|nuORF	REV__ENST00000343979.5_1_19:12299097-12299355:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	496.823161	991.631769	-1.1037	-0.00054836	-1.7814	-0.00088504	-2.8851	-0.0014334	496.8223568216028	68.378	0.24654	65.757	65.573	65.819	-2.6203	0.071073	0.00032116	NaN	35.201	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6397.2	+		8230	24676	6683	6693							0.13561862664937507
ELPVLRRR	8	Unmodified	_ELPVLRRR_					0	0	0		nc|ENSG00000165671|Q96L73-2|NSD1;ENSG00000165671|ENST00000439151|NSD1;NSD1-ZNF346|6|fusion;NSD1-ZNF346|5|fusion;NSD1-ZNF346|4|fusion;NSD1-ZNF346|8|fusion;NSD1-ZNF346|3|fusion;NSD1-ZNF346|7|fusion	nc|ENSG00000165671|Q96L73-2|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.7877807617188	2	519.830175	1037.6458	1.0976	0.00057058	-1.3264	-0.00068949	-0.22874	-0.00011891	519.8293409612062	42.559	0.64126	39.849	39.621	40.262	-2.7097					18	12	2	0	0	0	0.028476	1	2292	2292		57.811	6.4758	1	16914			8231	6589	6684	6694	9270	9270					0.12847952936590445
ELPYRRIKP	9	Unmodified	_ELPYRRIKP_					0	0	0			REV__nc|ENSG00000162843|B1ANS9-2|WDR64	REV__nc|ENSG00000162843|B1ANS9-2|WDR64	MULTI-SECPEP	OvCa9_classI_Rep4_	4	587.2957763671875	2	586.35094	1170.68733	-1.5506	-0.00090919	1.337	0.00078393	-0.21362	-0.00012526	586.3518332617109	120.26	0.41807	118.92	118.77	119.19	-1.3444					12	7	2	0	0	0	0.027462	1	11290	11290		14.865	0	1	8498.8	+		8232	20784	6685	6695	9271	9271					0.10881088905262004
ELQAATRWCS	10	Unmodified	_ELQAATRWCS_					0	0	0			REV__ENST00000351773.7_1_10:38384465-38384722:+|nuORF	REV__ENST00000351773.7_1_10:38384465-38384722:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	581.8218383789062	2	582.776948	1163.53934	-2.8354	-0.0016524	-4.354	-0.0025374	-7.1894	-0.0041898	582.7743593326387	49.683	0.98549	46.541	46.251	47.236	-3.1416					37	18	3	0	0	0	0.027117	1	2789	2789		35.152	14.315	1	95283	+		8233	24722	6686	6696	9272	9272					-0.03588590410890902
ELQALIYNVQ	10	Unmodified	_ELQALIYNVQ_					0	0	0		KIF21B|p.H1503Afs*22|1|0.21|ENSG00000116852|chr1:200975607-200975608|-/G|frameshift_variant;nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B	KIF21B|p.H1503Afs*22|1|0.21|ENSG00000116852|chr1:200975607-200975608|-/G|frameshift_variant	KIF21B|p.H1503Afs*22|1|0.21|ENSG00000116852|chr1:200975607-200975608|-/G|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.7724609375	2	595.824421	1189.63429	1.5638	0.00093173	-0.2962	-0.00017648	1.2676	0.00075525	595.8243851051523	124.9	0.41647	124.9	124.65	125.07	0					16	8	3	0	0	0	0.026956	1	14425	14425		26.693	2.1737	1	253910			8234	3214	6687	6697	9273	9273					0.04705666331938119
ELQDLDEKGDK	11	Unmodified	_ELQDLDEKGDK_					0	0	0			REV__ENSG00000181555|ENST00000409792|SETD2	REV__ENSG00000181555|ENST00000409792|SETD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	645.8462524414062	2	645.314614	1288.61468	0.33395	0.0002155	4.3416	0.0028017	4.6756	0.0030172	645.3172569118698	62.297	0.66018	62.297	62.081	62.741	0					31	15	3	0	0	0	0.025466	1	5546	5546		21.686	0	1	1991900	+		8235	22239	6688	6698	9274	9274					-0.018087544694935787
ELQDRVLIL	9	Unmodified	_ELQDRVLIL_					0	0	0		ENST00000546420.5_1_12:120437705-120530962:+|nuORF;nc|ENSG00000135127|Q6ZP65|BICDL1;ENSG00000135127|ENST00000548673|BICDL1	ENST00000546420.5_1_12:120437705-120530962:+|nuORF	ENST00000546420.5_1_12:120437705-120530962:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	549.8291625976562	2	549.829506	1097.64446	0.80067	0.00044023	-1.6255	-0.00089376	-0.82486	-0.00045353	549.8286388284898	82.164	4.5681	80.515	79.767	84.335	-1.6485					186	90	5	0	0	0	0.0078217	1	7023	7023		180.93	4.5153	1	3206100			8236	13533	6689	6699	9275	9275					0.09954274057213297
ELQDRVLIL	9	Unmodified	_ELQDRVLIL_					0	0	0		ENST00000546420.5_1_12:120437705-120530962:+|nuORF;nc|ENSG00000135127|Q6ZP65|BICDL1;ENSG00000135127|ENST00000548673|BICDL1	ENST00000546420.5_1_12:120437705-120530962:+|nuORF	ENST00000546420.5_1_12:120437705-120530962:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	549.8302612304688	2	549.829506	1097.64446	-1.4364	-0.00078979	0.25665	0.00014112	-1.1798	-0.00064867	549.8296566613044	82.508	4.9298	80.211	79.735	84.665	-2.2963					199	100	5	0	0	0	0.0085934	1	4693	4693		176.41	19.082	1	6178900			8237	13533	6689	6699	9276	9276					0.09954274057213297
ELQDSIRRAKE	11	Unmodified	_ELQDSIRRAKE_					0	0	0		ENSG00000168944|ENST00000306467|CEP120;nc|ENSG00000168944|Q8N960-2|CEP120;ENST00000513565.6_1_5:122694091-122724023:-|nuORF	ENSG00000168944|ENST00000306467|CEP120	ENSG00000168944|ENST00000306467|CEP120	MULTI-MSMS	OvCa99_classI_Rep5	1	448.9123229980469	3	448.912519	1343.71573	0.31454	0.0001412	-0.63436	-0.00028477	-0.31983	-0.00014357	448.9121461655548	35.543	0.59965	35.543	35.339	35.939	0					34	12	5	0	0	0	0.49333	1	1801	1801		54.343	3.8598	1	718610			8238	6961	6690	6700	9277	9277					0.05761742023901206
ELQEALEGLA	10	Unmodified	_ELQEALEGLA_					0	0	0			REV__nc|ENSG00000105357|Q7Z406-4|MYH14	REV__nc|ENSG00000105357|Q7Z406-4|MYH14	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.8330688476562	2	536.779679	1071.5448	-0.73307	-0.0003935	-4.4814	-0.0024055	-5.2145	-0.002799	537.2774876773311	93.302	0.60683	92.134	91.706	92.313	-1.168					20	11	2	0	0	0	0.026906	1	8329	8329		41.427	13.544	1	18587	+		8239	17714	6691	6701	9278	9278					0.011894116526036669
ELQEEGLIL	9	Unmodified	_ELQEEGLIL_					0	0	0			REV__IGF1R|p.F1189Lfs*51|1|0.28|ENSG00000140443|chr15:98943031-98943032|-/A|frameshift_variant	REV__IGF1R|p.F1189Lfs*51|1|0.28|ENSG00000140443|chr15:98943031-98943032|-/A|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8106689453125	2	522.284597	1042.55464	-0.2339	-0.00012216	2.1368	0.001116	1.9029	0.00099388	522.7875843960643	45.211	0.69183	45.211	44.932	45.624	0					30	15	4	0	0	0	0.027425	1	3163	3163		60.118	16.001	1	595170	+		8240	19671	6692	6702	9279	9279					0.035065996579760395
ELQELMGTVNT	11	Unmodified	_ELQELMGTVNT_					0	0	0		tr|A0A553SPR7|A0A553SPR7_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26935PE=4SV=1	tr|A0A553SPR7|A0A553SPR7_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26935PE=4SV=1	tr|A0A553SPR7|A0A553SPR7_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26935PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	412.77191162109375	3	412.204311	1233.5911	-0.41527	-0.00017118	0.42178	0.00017386	0.0065037	2.6809E-06	412.20428556494346	93.393	0.34827	91.431	91.228	91.577	-1.9617					9	6	2	0	0	0	0.026024	1	5978	5978		14.779	0	1	10054			8241	34074	6693	6703	9280	9280					-0.016348915076378034
ELQERNQEV	9	Unmodified	_ELQERNQEV_					0	0	0		CEP250|p.D1629N|1|0.14|ENSG00000126001|chr20:35503254-35503254|G/A|missense_variant	CEP250|p.D1629N|1|0.14|ENSG00000126001|chr20:35503254-35503254|G/A|missense_variant	CEP250|p.D1629N|1|0.14|ENSG00000126001|chr20:35503254-35503254|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.2633056640625	2	572.783284	1143.55202	-0.70703	-0.00040497	3.5385	0.0020268	2.8315	0.0016218	572.7851529067156	65.414	0.83345	65.414	65.111	65.945	0					43	20	3	0	0	0	0.027255	1	6062	6062		82.75	0	1	2000000			8242	224	6694	6704	9281	9281					-0.01401855747008085
ELQEVLGVDEE	11	Unmodified	_ELQEVLGVDEE_					0	0	0		ENST00000491136.6_1_1:52826615-52827248:-|nuORF;ENSG00000154222|ENST00000284376|CC2D1B;nc|ENSG00000154222|Q5T0F9|CC2D1B	ENST00000491136.6_1_1:52826615-52827248:-|nuORF	ENST00000491136.6_1_1:52826615-52827248:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	629.85009765625	2	630.303715	1258.59288	-0.40146	-0.00025304	0.64205	0.00040468	0.24059	0.00015165	630.3041097171971	82.468	0.97611	79.786	79.587	80.563	-2.683					37	19	3	0	0	0	0.025265	1	6807	6807		51.193	3.5354	1	51199			8243	5718	6695	6705	9282	9282					-0.02607559218017741
ELQFIVAFAP	10	Unmodified	_ELQFIVAFAP_					0	0	0			REV__nc|ENSG00000131697|O75161-2|NPHP4	REV__nc|ENSG00000131697|O75161-2|NPHP4	MULTI-MSMS	OvCa99_classI_Rep5	1	567.8131713867188	2	567.813325	1133.6121	-0.64206	-0.00036457	-1.7736	-0.0010071	-2.4157	-0.0013717	567.8121218333004	49.571	0.61401	49.571	49.33	49.944	0					30	13	3	0	0	0	0.58067	1	3714	3714		44.377	3.599	1	1903500	+		8244	19027	6696	6706	9283	9283					0.050634866541713563
ELQFVGKIL	9	Unmodified	_ELQFVGKIL_					0	0	0			REV__tr|A0A553SQ79|A0A553SQ79_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20500PE=4SV=1	REV__tr|A0A553SQ79|A0A553SQ79_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20500PE=4SV=1	MSMS	OvCa9_classI_Rep3	3	523.8181762695312	2	523.815867	1045.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.51	1	122.47	121.97	122.97	-1.0377								0	0	0	0.16872	1	9535	9535		54.776	3.4409	1		+		8245	30612	6697	6707	9284	9284					0.09619790516831017
ELQGKYLI	8	Unmodified	_ELQGKYLI_					0	0	0		tr|A0A7D6VSS0|A0A7D6VSS0_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10325PE=4SV=1	tr|A0A7D6VSS0|A0A7D6VSS0_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10325PE=4SV=1	tr|A0A7D6VSS0|A0A7D6VSS0_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10325PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.2745666503906	2	482.279118	962.543683	2.822	0.001361	-0.57931	-0.00027939	2.2427	0.0010816	482.2785082559148	99.215	0.61491	99.215	98.955	99.57	0					21	14	2	0	0	0	0.028476	1	10982	10982		18.324	0	1	569180			8246	35052	6698	6708	9285	9285					0.06091242074330694
ELQKAFQLL	9	Unmodified	_ELQKAFQLL_					0	0	0		nc|ENSG00000186976|Q5THR3-5|EFCAB6;ENSG00000186976|ENST00000262726|EFCAB6;nc|ENSG00000186976|Q5THR3-6|EFCAB6;ENST00000404038.5_1_22:44079617-44178198:-|nuORF	nc|ENSG00000186976|Q5THR3-5|EFCAB6	nc|ENSG00000186976|Q5THR3-5|EFCAB6	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3170776367188	2	545.318774	1088.623	-2.8527	-0.0015556	-0.96726	-0.00052747	-3.8199	-0.0020831	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.64427	1	11825	11825		26.693	0	1	337600			8247	8380	6699	6709	9286	9286					0.08222889028479585
ELQKDWNL	8	Unmodified	_ELQKDWNL_					0	0	0		tr|A0A7D6W185|A0A7D6W185_9CLOTIsochorismatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02240PE=4SV=1	tr|A0A7D6W185|A0A7D6W185_9CLOTIsochorismatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02240PE=4SV=1	tr|A0A7D6W185|A0A7D6W185_9CLOTIsochorismatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02240PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.30029296875	2	523.269281	1044.52401	1.9883	0.0010404	4.1365	0.0021645	6.1248	0.0032049	523.2712601153545	136.62	2.1537	135.07	133.86	136.01	-1.5436					58	43	2	0	0	0	0.028476	1	13297	13297		40.778	1.5253	1	15471			8248	35403	6700	6710	9287	9287					0.0035286606357658457
ELQKKDFIL	9	Unmodified	_ELQKKDFIL_					0	0	0		tr|A0A553SIY0|A0A553SIY0_NIACICd(2+)-exportingATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	tr|A0A553SIY0|A0A553SIY0_NIACICd(2+)-exportingATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	tr|A0A553SIY0|A0A553SIY0_NIACICd(2+)-exportingATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3294067382812	2	567.331882	1132.64921	-3.474	-0.0019709	-0.21845	-0.00012393	-3.6925	-0.0020949	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.62335	1	12277	12277		29.17	3.596	1	458690			8249	33438	6701	6711	9288	9288					0.0881915819995811
ELQKRFILNLP	11	Unmodified	_ELQKRFILNLP_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2;KIAA0319L-PSMB2|1|fusion;KIAA0319L-PSMB2|2|fusion	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	OvCa9_classI_Rep3	3	457.60791015625	3	457.61	1369.80817	-6.2055	-0.0028397	2.1368	0.00097783	-4.0687	-0.0018619	457.6108688134911	157.03	3.4081	155.86	154.91	158.32	-1.1707					147	80	2	0	0	0	0.72502	1	13537	13537		15.337	0.0043666	1	68588			8250	3764	6702	6712	9289	9289					0.13805871828094496
ELQKVQARL	9	Unmodified	_ELQKVQARL_					0	0	0			REV__nc|ENSG00000173230|Q14789|GOLGB1	REV__nc|ENSG00000173230|Q14789|GOLGB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7984008789062	2	542.827298	1083.64004	-0.83458	-0.00045303	-0.11548	-6.2686E-05	-0.95006	-0.00051572	542.8270823446779	65.538	0.39751	65.538	65.309	65.707	0					22	9	3	0	0	0	0.027411	1	6024	6024		74.255	19.479	1	1156500	+		8251	21758	6703	6713	9290	9290					0.10156809634281672
ELQLPPILR	9	Unmodified	_ELQLPPILR_					0	0	0		tr|A0A553SUP3|A0A553SUP3_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_03785PE=4SV=1	tr|A0A553SUP3|A0A553SUP3_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_03785PE=4SV=1	tr|A0A553SUP3|A0A553SUP3_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_03785PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.3574829101562	2	539.834591	1077.65463	0.17724	9.5683E-05	-0.54929	-0.00029653	-0.37205	-0.00020084	539.8340596239558	97.408	1.1138	95.03	94.611	95.725	-2.3786					35	21	3	0	0	0	0.027462	1	8621	8621		10.866	0	1	47356			8252	34628	6704	6714	9291	9291					0.11890881782437646
ELQLWNNYF	9	Unmodified	_ELQLWNNYF_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1;DOCK1-NPS|1|fusion;ENST00000484400.5_1_10:129046280-129142589:+|nuORF;ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF	nc|ENSG00000150760|Q14185|DOCK1;ENST00000484400.5_1_10:129046280-129142589:+|nuORF;ENSG00000147459|ENST00000276440|DOCK5	nc|ENSG00000150760|Q14185|DOCK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	614.3173828125	2	613.795663	1225.57677	2.1177	0.0012998	-0.061009	-3.7447E-05	2.0566	0.0012624	613.7959790237668	117.81	0.46121	117.81	117.6	118.06	0					13	9	2	0	0	0	0.027462	1	13527	13527		40.778	18.818	1	69295			8253	5517;5360;12600	6705	6715	9292	9292					-0.026991758736130578
ELQMLWGPAL	10	Unmodified	_ELQMLWGPAL_					0	0	0			REV__DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	REV__DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.9784545898438	2	579.30481	1156.59507	-2.0623	-0.0011947	-3.4341	-0.0019894	-5.4963	-0.003184	579.3027734382746	104.49	0.96965	104.49	103.73	104.7	0					31	22	2	0	0	0	0.026802	1	11662	11662		34.173	0	1	231920	+		8254	16340	6706	6716	9293	9293					0.02303242776724801
ELQQGPWNEA	10	Unmodified	_ELQQGPWNEA_					0	0	0			REV__nc|ENSG00000240849|A5PLL7-2|PEDS1	REV__nc|ENSG00000240849|A5PLL7-2|PEDS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.8258666992188	2	586.272552	1170.53055	0.69562	0.00040782	0.45979	0.00026956	1.1554	0.00067739	586.2728714370689	153.02	0.70026	153.02	152.85	153.55	0					17	13	2	0	0	0	0.026694	1	17982	17982		46.457	17.307	1	32917	+		8255	23442	6707	6717	9294	9294					-0.04789240775676262
ELQRFALPPL	10	Unmodified	_ELQRFALPPL_					0	0	0			REV__nc|ENSG00000113448|Q08499-11|PDE4D	REV__nc|ENSG00000113448|Q08499-11|PDE4D	MULTI-SECPEP	OvCa9_classI_Rep3	3	592.8251953125	2	592.345323	1182.67609	-1.0924	-0.00064706	0.13321	7.8908E-05	-0.95915	-0.00056815	592.848138198155	96.692	0.20822	94.863	94.775	94.984	-1.8286					7	3	3	0	0	0	0.026849	1	6364	6364		40.778	15.204	1	9022	+		8256	28802	6708	6718	9295	9295					0.09206266811133901
ELQRKLDN	8	Unmodified	_ELQRKLDN_					0	0	0		ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.8326110839844	2	508.28018	1014.54581	2.3981	0.0012189	2.7025	0.0013736	5.1006	0.0025925	508.2814157555168	86.821	0.7032	86.821	86.594	87.298	0					29	16	3	0	0	0	0.028476	1	9150	9150		75.043	0	1	1597300			8257	2227	6709	6719	9296	9296					0.039116708121468946
ELQRQILLL	9	Unmodified	_ELQRQILLL_					0	0	0			REV__chr12:69359236-69362788|199|14.18|0.22|6.03|+|0|TE_info:HAL1,HAL1_dup16795,L1,LINE,donor,-,69358807,69359236|None,YEATS4|5	REV__chr12:69359236-69362788|199|14.18|0.22|6.03|+|0|TE_info:HAL1,HAL1_dup16795,L1,LINE,donor,-,69358807,69359236|None,YEATS4|5	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.3518676757812	2	563.353148	1124.69174	0.72344	0.00040755	-1.5701	-0.00088453	-0.84668	-0.00047698	563.3523799001858	117.47	3.3994	116.13	115.53	118.93	-1.3452					169	64	5	0	0	0	0.51865	1	11042	11042		40.778	2.9666	1	2980000	+		8258	15891	6710	6720	9297	9297					0.1343855332820567
ELQTISPVI	9	Unmodified	_ELQTISPVI_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-7|BLTP1;REV__nc|ENSG00000138688|Q2LD37-6|BLTP1	REV__nc|ENSG00000138688|Q2LD37-6|BLTP1	MULTI-MSMS	OvCa99_classI_Rep5	1	500.2918701171875	2	500.289682	998.564812	1.3139	0.00065734	1.3628	0.00068177	2.6767	0.0013391	500.2901835263518	147.19	0.54037	147.19	146.91	147.45	0					26	10	3	0	0	0	0.27001	1	17215	17215		66.429	8.618	1	169730	+		8259	19560;28886	6711	6721	9298	9298					0.06547207383187015
ELRAIQENL	9	Unmodified	_ELRAIQENL_					0	0	0			REV__ENSG00000080986|ENST00000261597|NDC80	REV__ENSG00000080986|ENST00000261597|NDC80	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.8455200195312	2	543.301113	1084.58767	-1.0678	-0.00058016	-0.40186	-0.00021833	-1.4697	-0.00079849	543.3005387268588	44.123	0.40015	44.123	43.995	44.396	0					13	8	2	0	0	0	0.027426	1	2981	2981		56.721	5.3856	1	298700	+		8260	17062	6712	6722	9299	9299					0.048762265006644157
ELRAIVSSL	9	Unmodified	_ELRAIVSSL_					0	0	0		tr|A0A553SRM0|A0A553SRM0_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_01335PE=4SV=1	tr|A0A553SRM0|A0A553SRM0_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_01335PE=4SV=1	tr|A0A553SRM0|A0A553SRM0_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_01335PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	494.29547119140625	2	494.295299	986.576045	-1.1483	-0.00056758	0.076684	3.7905E-05	-1.0716	-0.00052968	494.2953202394874	91.548	1.6915	89.524	88.624	90.315	-2.0241					95	33	4	0	0	0	0.21231	1	5737	5737		74.255	2.9593	1	2048800			8261	34275	6713	6723	9300	9300					0.08222029477337855
ELRANPGP	8	Unmodified	_ELRANPGP_					0	0	0		ENST00000454558.2_2_2:97203122-97203740:+|nuORF	ENST00000454558.2_2_2:97203122-97203740:+|nuORF	ENST00000454558.2_2_2:97203122-97203740:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	428.2185363769531	2	427.229959	852.445365	-0.51809	-0.00022134	0.85063	0.00036341	0.33254	0.00014207	427.2302647227385	41.831	0.43033	41.831	41.637	42.068	0					11	9	2	0	0	0	0.028476	1	2670	2670		21.96	0.25755	1	42949			8262	12087	6714	6724	9301	9301					0.013240585491416823
ELRAQHAML	9	Unmodified	_ELRAQHAML_					0	0	0		nc|ENSG00000111860|Q5SZL2-3|CEP85L;nc|ENSG00000111860|Q5SZL2-5|CEP85L;nc|ENSG00000111860|Q5SZL2-2|CEP85L;ENSG00000111860|ENST00000368491|CEP85L;nc|ENSG00000111860|Q5SZL2-4|CEP85L	nc|ENSG00000111860|Q5SZL2-3|CEP85L	nc|ENSG00000111860|Q5SZL2-3|CEP85L	MULTI-MSMS	OvCa99_classI_Rep5	1	534.78515625	2	534.784576	1067.5546	1.1383	0.00060877	-0.013899	-7.4332E-06	1.1244	0.00060134	534.7843882972728	155.3	1.3659	155.3	154.78	156.14	0					57	26	3	0	0	0	0.37135	1	18218	18218		54.776	1.4249	1	203560			8263	2859	6715	6725	9302	9302					0.02352321176977057
ELRARKAARP	10	Unmodified	_ELRARKAARP_					0	0	0		ENSG00000146109|ENST00000274849|ABT1	ENSG00000146109|ENST00000274849|ABT1	ENSG00000146109|ENST00000274849|ABT1	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3573608398438	2	584.357088	1166.69962	-2.312	-0.0013511	1.1487	0.00067126	-1.1633	-0.0006798	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.6349	2	14548	14508;14548		37.812	4.9991	1	180810			8264	5266	6716	6726	9303;9304	9304					0.12294125368293862
ELRARKAARP	10	Unmodified	_ELRARKAARP_					0	0	0		ENSG00000146109|ENST00000274849|ABT1	ENSG00000146109|ENST00000274849|ABT1	ENSG00000146109|ENST00000274849|ABT1	MULTI-MSMS	OvCa9_classI_Rep3	3	584.355712890625	2	584.357088	1166.69962	-4.6254	-0.0027029	3.4374	0.0020087	-1.1881	-0.00069425	584.3589865391973	145.25	4.5766	144.28	142.9	147.48	-0.97299					233	91	4	0	0	0	0.62299	1	12151	12151		39.253	12.56	1	156220			8265	5266	6716	6726	9305	9305					0.12294125368293862
ELRASAPSPE	10	Unmodified	_ELRASAPSPE_					0	0	0		nc|ENSG00000204634|O95759-2|TBC1D8;nc|ENSG00000204634|O95759|TBC1D8;ENSG00000204634|ENST00000409318|TBC1D8	nc|ENSG00000204634|O95759-2|TBC1D8	nc|ENSG00000204634|O95759-2|TBC1D8	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.2958984375	2	528.769645	1055.52474	0.14983	7.9225E-05	3.935	0.0020807	4.0849	0.00216	528.7715411250088	71.855	0.57855	71.855	71.629	72.208	0					29	13	3	0	0	0	0.026694	1	6952	6952		54.722	8.7704	1	1671900			8266	9015	6717	6727	9306	9306					-0.0008033928738768736
ELRCKGSGAR	10	Unmodified	_ELRCKGSGAR_					0	0	0		ENST00000548603.1_1_16:712278-713180:+|nuORF;ENST00000547407.5_1_16:711076-715728:+|nuORF;ENST00000552728.5_1_16:708591-715679:+|nuORF;ENST00000549024.5_1_16:711101-717586:+|nuORF;ENST00000552683.5_1_16:707859-713132:+|nuORF	ENST00000548603.1_1_16:712278-713180:+|nuORF	ENST00000548603.1_1_16:712278-713180:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	537.80712890625	2	538.785107	1075.55566	0.49543	0.00026693	-1.5253	-0.00082182	-1.0299	-0.00055489	538.7838507079548	97.96	0.40652	96.201	96.011	96.417	-1.7595					10	7	2	0	0	0	0.026916	1	6541	6541		43.651	1.2547	1	26913			8267	13550	6718	6728	9307	9307					0.020905355458808117
ELRDDPPI	8	Unmodified	_ELRDDPPI_					0	0	0		nc|ENSG00000115155|Q9HC10-2|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;OTOF|p.G1754Efs*4|1|0.04|ENSG00000115155|chr2:26462109-26462113|CTCCC/-|frameshift_variant;OTOF|p.Y1215Mfs*57|1|0.35|ENSG00000115155|chr2:26473222-26473223|-/CTCAT|frameshift_variant	nc|ENSG00000115155|Q9HC10-2|OTOF;OTOF|p.Y1215Mfs*57|1|0.35|ENSG00000115155|chr2:26473222-26473223|-/CTCAT|frameshift_variant	nc|ENSG00000115155|Q9HC10-2|OTOF	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.3003845214844	2	477.748182	953.481811	0.15593	7.4494E-05	-0.65122	-0.00031112	-0.49529	-0.00023662	477.7476505517022	86.715	1.3334	85.284	84.856	86.189	-1.4311					50	25	3	0	0	0	0.028476	1	7561	7561		30.504	0	1	59072			8268	14974;15469	6719	6729	9308	9308					0.0032089065517766358
ELREMIVPLLI	11	Unmodified	_ELREMIVPLLI_					0	0	0			REV__ENSG00000156398|ENST00000369893|SFXN2	REV__ENSG00000156398|ENST00000369893|SFXN2	MULTI-MSMS	OvCa9_classI_Rep2	2	442.60198974609375	3	442.600225	1324.77884	0.47843	0.00021175	3.2097	0.0014206	3.6881	0.0016324	442.60159734649346	49.766	2.5262	47.006	46.523	49.049	-2.7603					125	50	5	0	0	0	0.54114	1	3210	3210		50.034	2.074	1	549840	+		8269	20475	6720	6730	9309	9309					0.129445914875987
ELREMIVPLLI	11	Unmodified	_ELREMIVPLLI_					0	0	0			REV__ENSG00000156398|ENST00000369893|SFXN2	REV__ENSG00000156398|ENST00000369893|SFXN2	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		3	442.600225	1324.77884	-1.4984	-0.0006632	5.2184	0.0023097	3.72	0.0016465	442.6024623792791	50.389	2.298	47.247	46.61	48.908	-3.1416	0.12053	0.00141	NaN	50.034	99	44	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	430660	+		8270	20475	6720	6730							0.129445914875987
ELRERLQRA	9	Unmodified	_ELRERLQRA_					0	0	0			REV__nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	REV__nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	MULTI-MSMS	OvCa99_classI_Rep5	1	585.8422241210938	2	585.838728	1169.6629	2.6619	0.0015595	1.5807	0.00092601	4.2426	0.0024855	585.8397307647163	116.01	0.82735	116.01	115.68	116.51	0					34	17	3	0	0	0	0.12515	1	13251	13251		90.37	22.876	1	649970	+		8271	17689	6721	6731	9310	9310					0.08485828751759072
ELRERVMT	8	Unmodified	_ELRERVMT_					0	0	0			REV__ENST00000325509.4_1_8:72754443-72754593:-|nuORF	REV__ENST00000325509.4_1_8:72754443-72754593:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.3140258789062	2	517.276583	1032.53861	-0.60248	-0.00031165	-2.4891	-0.0012876	-3.0916	-0.0015992	517.2751698765725	29.8	0.14868	29.8	29.686	29.835	0					4	2	2	0	0	0	0.028476	1	1092	1092		26.693	0	1	12071	+		8272	24485	6722	6732	9311	9311					0.023646149400747163
ELRETVGDL	9	Unmodified	_ELRETVGDL_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74595806-74598423:-|nuORF	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.272705078125	2	516.272021	1030.52949	1.4651	0.00075638	0.59758	0.00030851	2.0627	0.0010649	516.2723593444842	80.811	1.0134	80.811	80.274	81.288	0					47	23	3	0	0	0	0.35444	1	8297	8297		56.721	0.28726	1	3049500			8273	9031	6723	6733	9312	9312					0.01544544855391905
ELREVIELP	9	Unmodified	_ELREVIELP_					0	0	0		ENSG00000100519|ENST00000445930|PSMC6;ENST00000557085.1_1_14:53177833-53180694:+|nuORF;ENST00000458604.6_1_14:53173986-53184887:+|nuORF	ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.33544921875	2	549.313689	1096.61282	-2.3314	-0.0012807	-0.20208	-0.000111	-2.5335	-0.0013917	549.3130439058157	49.674	0.62096	46.532	46.301	46.922	-3.1416					18	11	2	0	0	0	0.027462	1	2836	2836		42.396	0	1	51233			8274	2080	6724	6734	9313	9313					0.06838281303225813
ELRGIKLLD	9	Unmodified	_ELRGIKLLD_					0	0	0		tr|A0A7D6ZSJ2|A0A7D6ZSJ2_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16080PE=4SV=1	tr|A0A7D6ZSJ2|A0A7D6ZSJ2_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16080PE=4SV=1	tr|A0A7D6ZSJ2|A0A7D6ZSJ2_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16080PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3462524414062	2	528.824224	1055.63389	1.9442	0.0010281	1.1752	0.00062145	3.1193	0.0016496	528.8248820881936	87.651	1.0387	87.651	87.216	88.255	0					73	24	5	0	0	0	0.027062	1	9364	9364		87.696	15.819	1	1537100			8275	35739	6725	6735	9314	9314					0.10830291402771763
ELRGNEDQVL	10	Unmodified	_ELRGNEDQVL_					0	0	0		nc|ENSG00000176927|A4FU69-3|EFCAB5;ENSG00000176927|ENST00000394835|EFCAB5	nc|ENSG00000176927|A4FU69-3|EFCAB5	nc|ENSG00000176927|A4FU69-3|EFCAB5	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.7747192382812	2	586.798934	1171.58332	1.4359	0.0008426	3.3784	0.0019824	4.8143	0.002825	586.8008390732435	80.819	0.50863	80.819	80.571	81.08	0					23	11	3	0	0	0	0.026975	1	8324	8324		38.754	8.25	1	803640			8276	7640	6726	6736	9315	9315					0.004387172871020084
ELRGVFCVPK	10	Unmodified	_ELRGVFCVPK_					0	0	0			REV__ENST00000462723.1_1_7:7678661-7680049:-|nuORF	REV__ENST00000462723.1_1_7:7678661-7680049:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	574.8359375	2	574.318251	1146.62195	0.85682	0.00049209	-4.094	-0.0023513	-3.2372	-0.0018592	574.3157337968419	90.337	0.99824	89.034	88.73	89.728	-1.302					33	19	2	0	0	0	0.02658	1	7953	7953		37.812	8.6415	1	135780	+		8277	17801	6727	6737	9316	9316					0.05450351387912633
ELRGVFCVPK	10	Unmodified	_ELRGVFCVPK_					0	0	0			REV__ENST00000462723.1_1_7:7678661-7680049:-|nuORF	REV__ENST00000462723.1_1_7:7678661-7680049:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	574.838134765625	2	574.318251	1146.62195	-1.4046	-0.00080667	-1.3039	-0.00074887	-2.7085	-0.0015555	574.3169674580182	91.129	1.2141	89.105	88.727	89.941	-2.0241					58	23	3	0	0	0	0.026493	1	5712	5712		54.776	10.66	1	228580	+		8278	17801	6727	6737	9317	9317					0.05450351387912633
ELRGVFCVPK	10	Unmodified	_ELRGVFCVPK_					0	0	0			REV__ENST00000462723.1_1_7:7678661-7680049:-|nuORF	REV__ENST00000462723.1_1_7:7678661-7680049:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	574.8388671875	2	574.318251	1146.62195	-0.88074	-0.00050582	-1.8118	-0.0010405	-2.6925	-0.0015464	574.3167141724448	91.583	1.5197	89.04	88.657	90.176	-2.5425					52	29	3	0	0	0	0.026635	1	7958	7958		66.429	25.003	1	186990	+		8279	17801	6727	6737	9318	9318					0.05450351387912633
ELRHPRQEE	9	Unmodified	_ELRHPRQEE_					0	0	0		ENST00000424161.5_1_22:28390471-28393540:+|nuORF	ENST00000424161.5_1_22:28390471-28393540:+|nuORF	ENST00000424161.5_1_22:28390471-28393540:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	597.30419921875	2	597.304718	1192.59488	1.4333	0.00085613	-1.886	-0.0011265	-0.45272	-0.00027041	597.3033979389437	119.45	0.98956	119.45	119.19	120.18	0					52	23	3	0	0	0	0.42576	1	13723	13723		49.536	0	1	1049100			8280	11710	6728	6738	9319	9319					0.006289591010954609
ELRHQLQSRQQ	11	Unmodified	_ELRHQLQSRQQ_					0	0	0		nc|ENSG00000204681|Q9UBS5-2|GABBR1;nc|ENSG00000204681|Q9UBS5-3|GABBR1;ENSG00000204681|ENST00000377034|GABBR1	nc|ENSG00000204681|Q9UBS5-2|GABBR1	nc|ENSG00000204681|Q9UBS5-2|GABBR1	MULTI-MSMS	OvCa99_classI_Rep5	1	474.9242248535156	3	474.923529	1421.74876	0.021073	1.0008E-05	1.602	0.00076081	1.623	0.00077082	474.92420350889455	46.993	0.96181	46.993	46.719	47.681	0					65	21	5	0	0	0	0.63942	1	3349	3349		41.08	2.366	1	1830800			8281	9018	6729	6739	9320	9320					0.05475368866609642
ELRICRIN	8	Carbamidomethyl (C)	_ELRIC(Carbamidomethyl (C))RIN_	ELRIC(1)RIN		ELRIC(42)RIN		0	1	0		ENSG00000104856|ENST00000221452|RELB	ENSG00000104856|ENST00000221452|RELB	ENSG00000104856|ENST00000221452|RELB	MULTI-MSMS	OvCa9_classI_Rep2	2	537.295654296875	2	537.29785	1072.58115	-1.8238	-0.00097994	-2.4454	-0.0013139	-4.2692	-0.0022938	537.2965706710853	60.933	2.3725	58.163	57.501	59.873	-2.7702					136	45	4	0	0	0	0.70469	1	4554	4554		42.396	6.0785	1	2338900			8282	2400	6730	6740	9321	9321	21				0.04776010068303549
ELRIDTLKME	10	Unmodified	_ELRIDTLKME_					0	0	0			REV__ENSG00000166833|ENST00000349880|NAV2;REV__nc|ENSG00000134369|Q8NEY1-5|NAV1	REV__ENSG00000166833|ENST00000349880|NAV2	MULTI-SECPEP	OvCa9_classI_Rep2	2	415.91485595703125	3	416.560317	1246.65912	0.50481	0.00021028	2.491	0.0010376	2.9958	0.0012479	416.5608657451147	64.581	0.58276	61.856	61.545	62.128	-2.7245					15	10	2	0	0	0	0.026548	1	4927	4927		54.722	8.7501	1	12238	+		8283	21225;19200	6731	6741	9322	9322					0.045659781430231305
ELRKDDTI	8	Unmodified	_ELRKDDTI_					0	0	0		tr|A0A7D7A6L9|A0A7D7A6L9_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_11295PE=4SV=1	tr|A0A7D7A6L9|A0A7D7A6L9_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_11295PE=4SV=1	tr|A0A7D7A6L9|A0A7D7A6L9_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_11295PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	496.27081298828125	2	495.266739	988.518924	2.3265	0.0011522	0.56854	0.00028158	2.8951	0.0014338	495.26670069225105	75.975	0.75755	75.975	75.723	76.48	0					53	18	5	0	0	0	0.66057	1	7615	7615		51.335	3.4199	1	3088500			8284	36197	6732	6742	9323	9323					0.024205622009503713
ELRKEVQLL	9	Unmodified	_ELRKEVQLL_					0	0	0			REV__nc|ENSG00000006740|Q17R89-3|ARHGAP44	REV__nc|ENSG00000006740|Q17R89-3|ARHGAP44	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.8118896484375	2	564.342781	1126.67101	2.3673	0.001336	-1.952	-0.0011016	0.41537	0.00023441	564.844125587306	112.8	0.63148	112.8	112.52	113.15	0					35	13	4	0	0	0	0.027462	1	12863	12863		37.159	10.466	1	141340	+		8285	16424	6733	6743	9324	9324					0.11273962948530425
ELRKLPVPQ	9	Unmodified	_ELRKLPVPQ_					0	0	0		ENSG00000117408|ENST00000372343|IPO13	ENSG00000117408|ENST00000372343|IPO13	ENSG00000117408|ENST00000372343|IPO13	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3287963867188	2	540.332216	1078.64988	-1.5762	-0.00085169	-2.2598	-0.001221	-3.836	-0.0020727	540.3309156564876	138.68	4.2384	138.45	137.13	141.37	-0.22697					227	86	3	0	0	0	0.67509	1	13866	13866		23.042	1.0826	1	66382			8286	3253	6734	6744	9325	9325					0.11369997639667417
ELRLPSLLD	9	Unmodified	_ELRLPSLLD_					0	0	0		ENST00000409212.5_1_2:235887401-235943560:+|nuORF	ENST00000409212.5_1_2:235887401-235943560:+|nuORF	ENST00000409212.5_1_2:235887401-235943560:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.8319702148438	2	528.308406	1054.60226	-1.3634	-0.0007203	0.50113	0.00026475	-0.86227	-0.00045554	528.3084117386826	83.824	1.4914	81.563	81.164	82.655	-2.261					62	31	3	0	0	0	0.027433	1	4796	4796		54.776	0	1	431350			8287	11520	6735	6745	9326	9326					0.07714298648807016
ELRLPTSTP	9	Unmodified	_ELRLPTSTP_					0	0	0			REV__ENST00000369774.8_3_10:105376987-105386893:-|nuORF	REV__ENST00000369774.8_3_10:105376987-105386893:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.7499084472656	2	507.284931	1012.55531	-0.96934	-0.00049173	0.65031	0.00032989	-0.31903	-0.00016184	507.28489472540883	78.178	0.60098	75.826	75.497	76.098	-2.3527					15	11	2	0	0	0	0.027462	1	4137	4137		39.253	7.298	1	59332	+		8288	24947	6736	6746	9327	9327					0.04953439097653245
ELRLRINKLES	11	Unmodified	_ELRLRINKLES_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1;REV__MACF1-CMTM4|1|fusion	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MSMS	OvCa9_classI_Rep4_	4	457.6072692871094	3	457.608659	1369.80415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	157.75	1	156.21	155.71	156.71	-1.545								0	0	0	0.19474	1	15596	15596		11.932	0.47776	1		+		8289	18823;28637	6737	6747	9328	9328					0.13403782334376046
ELRLSMQKSM	10	Unmodified	_ELRLSMQKSM_					0	0	0		ENST00000505555.5_1_5:218470-251793:+|nuORF;ENST00000515752.5_1_5:236500-256532:+|nuORF;nc|ENSG00000073578|P31040-3|SDHA;nc|ENSG00000073578|P31040-2|SDHA;ENSG00000073578|ENST00000264932|SDHA	ENST00000505555.5_1_5:218470-251793:+|nuORF	ENST00000505555.5_1_5:218470-251793:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.75067138671875	3	408.214264	1221.62096	0.77627	0.00031688	4.0942	0.0016713	4.8705	0.0019882	408.5502922433619	33.515	0.39385	33.515	33.335	33.728	0					9	7	2	0	0	0	0.026968	1	1562	1562		34.087	0	1	22138			8290	12896	6738	6748	9329	9329					0.019017689567135676
ELRLVAKK	8	Unmodified	_ELRLVAKK_					0	0	0			REV__tr|A0A553SPD0|A0A553SPD0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_26160PE=4SV=1	REV__tr|A0A553SPD0|A0A553SPD0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_26160PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	478.8162536621094	2	478.816202	955.617851	3.5327	0.0016915	-3.895	-0.001865	-0.36236	-0.0001735	478.81426293818424	25.063	0.46704	22.354	22.261	22.728	-2.7097					12	9	2	0	0	0	0.75723	1	210	210		23.042	0	1	28748	+		8291	30526	6739	6749	9330	9330					0.13826629956508896
ELRPGFAG	8	Unmodified	_ELRPGFAG_					0	0	0		ENST00000258052.7_1_6:109762215-109762762:+|nuORF	ENST00000258052.7_1_6:109762215-109762762:+|nuORF	ENST00000258052.7_1_6:109762215-109762762:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	424.21929931640625	2	423.727052	845.439552	0.15679	6.6438E-05	0.10304	4.3661E-05	0.25983	0.0001101	423.72697470205543	56.623	0.57562	56.623	56.3	56.875	0					21	13	2	0	0	0	0.028476	1	4733	4733		33.516	3.0119	1	291040			8292	9834	6740	6750	9331	9331					0.01064960037479068
ELRPGHKII	9	Unmodified	_ELRPGHKII_					0	0	0			REV__nc|ENSG00000188175|A8MVW5-3|HEPACAM2	REV__nc|ENSG00000188175|A8MVW5-3|HEPACAM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.7933349609375	2	531.824558	1061.63456	1.9346	0.0010288	-3.6826	-0.0019585	-1.7481	-0.00092966	531.8224465004821	93.778	1.7352	93.778	93.508	95.244	0					67	40	4	0	0	0	0.027433	1	10253	10253		54.776	0	1	12334000	+		8293	29064	6741	6751	9332	9332					0.10621130842469029
ELRQAIGLM	9	Unmodified	_ELRQAIGLM_					0	0	0		ENSG00000115271|ENST00000437150|GCA;ENST00000487445.6_1_2:163200677-163215720:+|nuORF;ENST00000479199.1_1_2:163200728-163213435:+|nuORF	ENSG00000115271|ENST00000437150|GCA	ENSG00000115271|ENST00000437150|GCA	MULTI-MSMS	OvCa9_classI_Rep3	3	515.7880249023438	2	515.789327	1029.5641	0.18906	9.7516E-05	-4.0335	-0.0020804	-3.8444	-0.0019829	515.7872662216187	78.378	1.3926	76.025	75.698	77.091	-2.3527					57	27	3	0	0	0	0.27546	1	4184	4184		65.803	3.6958	1	1459700			8294	3079	6742	6752	9333	9333					0.050500894624974535
ELRQDDYQIF	10	Unmodified	_ELRQDDYQIF_					0	0	0			REV__tr|A0A7D6VPX7|A0A7D6VPX7_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18570PE=4SV=1	REV__tr|A0A7D6VPX7|A0A7D6VPX7_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18570PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	442.8812255859375	3	442.882337	1325.62518	0.54026	0.00023927	-3.716	-0.0016458	-3.1758	-0.0014065	442.88070915096876	43.368	0.63655	43.368	43.1	43.737	0					32	14	3	0	0	0	0.55713	1	2864	2864		47.228	3.8091	1	849810	+		8295	31286	6743	6753	9334	9334					-0.024607270243905077
ELRRGKGVPI	10	Unmodified	_ELRRGKGVPI_					0	0	0			REV__chr1:12580666-12619071|86|22.65|0.26|6.42|-|2|DHRS3,None|1	REV__chr1:12580666-12619071|86|22.65|0.26|6.42|-|2|DHRS3,None|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.3278198242188	2	562.848564	1123.68258	2.1563	0.0012137	2.6944	0.0015166	4.8508	0.0027303	562.8505316924739	129.83	0.61285	129.83	129.59	130.2	0					23	12	3	0	0	0	0.026659	1	15046	15046		45.972	18.09	1	133620	+		8296	15798	6744	6754	9335	9335					0.12568204762533242
ELRRHLLH	8	Unmodified	_ELRRHLLH_					0	0	0			REV__sp|P16783|TRX1_HCMVATriplexcapsidprotein1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRX1PE=1SV=1	REV__sp|P16783|TRX1_HCMVATriplexcapsidprotein1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRX1PE=1SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.7943725585938	2	537.319974	1072.6254	-1.8528	-0.00099556	1.3211	0.00070987	-0.53171	-0.0002857	537.8220275801428	43.094	0.68208	40.086	39.643	40.326	-3.0074					15	12	2	0	0	0	0.028476	1	2055	2055		35.618	0	1	13609	+		8297	29385	6745	6755	9336	9336					0.09198782276803286
ELRRISDTLL	10	Unmodified	_ELRRISDTLL_					0	0	0			REV__ENST00000474025.1_1_1:31744094-31762265:-|nuORF	REV__ENST00000474025.1_1_1:31744094-31762265:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	608.3603515625	2	608.356419	1214.69829	1.7559	0.0010682	3.1703	0.0019287	4.9262	0.0029969	608.3578571844915	118.88	0.5686	118.88	118.58	119.15	0					30	11	4	0	0	0	0.48398	1	13633	13633		56.434	3.4971	1	180950	+		8298	26339	6746	6756	9337	9337					0.09952446488910027
ELRRISDTLL	10	Unmodified	_ELRRISDTLL_					0	0	0			REV__ENST00000474025.1_1_1:31744094-31762265:-|nuORF	REV__ENST00000474025.1_1_1:31744094-31762265:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	608.356419	1214.69829	2.3927	0.0014556	0.52392	0.00031873	2.9166	0.0017743	608.3566809650926	119.76	0.88621	118.73	118.48	119.36	-1.0271	-0.0060239	-0.0027522	NaN	56.434	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35862	+		8299	26339	6746	6756							0.09952446488910027
ELRRISDTLL	10	Unmodified	_ELRRISDTLL_					0	0	0			REV__ENST00000474025.1_1_1:31744094-31762265:-|nuORF	REV__ENST00000474025.1_1_1:31744094-31762265:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	608.356419	1214.69829	-0.73941	-0.00044982	5.1274	0.0031193	4.388	0.0026695	608.3596684955338	119.95	0.94284	118.6	118.4	119.35	-1.3444	-0.13322	0.0028489	NaN	56.434	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32203	+		8300	26339	6746	6756							0.09952446488910027
ELRRKELL	8	Unmodified	_ELRRKELL_					0	0	0			REV__ENSG00000163932|ENST00000330452|PRKCD	REV__ENSG00000163932|ENST00000330452|PRKCD	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.8070068359375	2	528.82984	1055.64513	-1.0945	-0.00057879	1.6131	0.00085304	0.5186	0.00027425	528.8300370265272	87.158	1.1759	84.981	84.633	85.809	-2.1768					46	22	3	0	0	0	0.028476	1	5299	5299		30.504	3.7075	1	18452	+		8301	20913	6747	6757	9338	9338					0.11953113496906553
ELRRKELL	8	Unmodified	_ELRRKELL_					0	0	0			REV__ENSG00000163932|ENST00000330452|PRKCD	REV__ENSG00000163932|ENST00000330452|PRKCD	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	528.82984	1055.64513	-2.4845	-0.0013139	1.5079	0.00079744	-0.97651	-0.00051641	528.8301708631648	87.705	0.65405	85.079	84.799	85.453	-2.6269	0.048747	-8.1466E-05	NaN	30.504	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19350	+		8302	20913	6747	6757							0.11953113496906553
ELRRKLTP	8	Unmodified	_ELRRKLTP_					0	0	0			REV__nc|ENSG00000152457|Q96SD1-4|DCLRE1C;REV__ENST00000396817.6_1_10:14989607-14996009:-|nuORF	REV__ENST00000396817.6_1_10:14989607-14996009:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.78448486328125	2	506.816733	1011.61891	2.5778	0.0013065	-1.64	-0.00083117	0.93782	0.0004753	506.8158780562042	87.883	0.24934	87.883	87.712	87.962	0					9	5	2	0	0	0	0.028476	1	9326	9326		26.693	0	1	117750	+		8303	20287;24789	6748	6758	9339	9339					0.11356844325405291
ELRRLPRRLQR	11	Unmodified	_ELRRLPRRLQR_					0	0	0		ENST00000435009.2_1_13:41341020-41341101:-|nuORF	ENST00000435009.2_1_13:41341020-41341101:-|nuORF	ENST00000435009.2_1_13:41341020-41341101:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3098449707031	3	498.314692	1491.92225	-6.1524	-0.0030658	-3.0385	-0.0015141	-9.1909	-0.00458	498.3133054732335	158.89	2.5083	157.31	156.27	158.78	-1.5859					162	69	3	0	0	0	0.72545	1	15738	15738		9.6461	3.6451	1	46050			8304	11854	6749	6759	9340	9340					0.19596199433544825
ELRRTLDI	8	Unmodified	_ELRRTLDI_					0	0	0		tr|A0A7D6ZQU6|A0A7D6ZQU6_9CLOTAbrB/MazE/SpoVTfamilyDNA-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01810PE=4SV=1	tr|A0A7D6ZQU6|A0A7D6ZQU6_9CLOTAbrB/MazE/SpoVTfamilyDNA-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01810PE=4SV=1	tr|A0A7D6ZQU6|A0A7D6ZQU6_9CLOTAbrB/MazE/SpoVTfamilyDNA-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01810PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.2983093261719	2	508.298373	1014.58219	0.56082	0.00028506	-2.4859	-0.0012636	-1.9251	-0.00097854	508.2969585173289	45.601	1.7481	45.601	45.373	47.121	0					89	39	5	0	0	0	0.58851	1	3228	3228		66.429	5.4573	1	25234000			8305	35708	6750	6760	9341	9341					0.07548547708859132
ELRRYGFT	8	Unmodified	_ELRRYGFT_					0	0	0			REV__ENSG00000149311|ENST00000675843|ATM	REV__ENSG00000149311|ENST00000675843|ATM	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.8145141601562	2	521.277441	1040.54033	-1.0814	-0.0005637	0.049478	2.5792E-05	-1.0319	-0.00053791	521.2792506558501	80.347	1.1262	77.636	77.171	78.298	-2.7106					36	22	3	0	0	0	0.028476	1	6515	6515		42.396	0	1	113140	+		8306	20157	6751	6761	9342	9342					0.021679920203496295
ELRSNFEF	8	Unmodified	_ELRSNFEF_					0	0	0			REV__nc|ENSG00000070729|Q14028-2|CNGB1	REV__nc|ENSG00000070729|Q14028-2|CNGB1	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.2824096679688	2	521.253631	1040.49271	0.056886	2.9652E-05	-0.86528	-0.00045103	-0.80839	-0.00042138	521.2519004740938	69.791	0.49745	67.221	66.965	67.462	-2.5707					10	9	2	0	0	0	0.028476	1	5578	5578		38.806	5.9937	1	7128.6	+		8307	16887	6752	6762	9343	9343					-0.025917069705201357
ELRSRGPPLPL	11	Unmodified	_ELRSRGPPLPL_					0	0	0			REV__ENST00000367311.4_1_1:201435078-201437729:-|nuORF	REV__ENST00000367311.4_1_1:201435078-201437729:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	618.339599609375	2	617.866954	1233.71936	2.1915	0.0013541	2.3346	0.0014425	4.5262	0.0027966	617.8690035499476	116.33	0.18413	116.33	116.23	116.42	0					5	3	2	0	0	0	0.025701	1	13313	13313		29.17	0	1	91099	+		8308	24895	6753	6763	9344	9344					0.11184456588421199
ELRTLQTFS	9	Unmodified	_ELRTLQTFS_					0	0	0			REV__ENST00000378928.2_1_X:30864096-30870978:-|nuORF	REV__ENST00000378928.2_1_X:30864096-30870978:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.3213500976562	2	547.795663	1093.57677	1.271	0.00069624	1.0371	0.00056813	2.3081	0.0012644	547.7961763620766	79.336	0.50899	79.336	79.037	79.546	0					18	12	2	0	0	0	0.027462	1	8048	8048		15.642	0	1	328190	+		8309	25148	6754	6764	9345	9345					0.03372824126381602
ELRTPEELN	9	Unmodified	_ELRTPEELN_					0	0	0		nc|ENSG00000150275|Q96QU1-4|PCDH15;nc|ENSG00000150275|Q96QU1-6|PCDH15;ENSG00000150275|ENST00000644397|PCDH15;PCDH15|p.R1292Pfs*9|1|0.14|ENSG00000150275|chr10:53840428-53840428|C/-|frameshift_variant;nc|ENSG00000150275|Q96QU1-3|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15	nc|ENSG00000150275|Q96QU1-4|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15	nc|ENSG00000150275|Q96QU1-4|PCDH15	MULTI-SECPEP	OvCa9_classI_Rep2	2	549.8297729492188	2	550.782753	1099.55095	0.99088	0.00054576	0.82281	0.00045319	1.8137	0.00099895	550.7794925017841	82.13	1.1906	80.482	79.665	80.856	-1.6485					51	22	4	0	0	0	0.027047	1	7017	7017		99.375	17.07	1	35789			8310	15089;15090	6755	6765	9346	9346					0.005159298841135751
ELRVALGLL	9	Unmodified	_ELRVALGLL_					0	0	0			REV__ENSG00000087302|ENST00000261700|RTRAF	REV__ENSG00000087302|ENST00000261700|RTRAF	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.3056640625	2	492.316035	982.617516	0.96898	0.00047704	-1.0792	-0.00053133	-0.11027	-5.4287E-05	492.31522447612804	113.62	1.2349	113.51	113.12	114.35	-0.11777					40	24	2	0	0	0	0.027462	1	10864	10864		15.642	0	1	37013	+		8311	17164	6756	6766	9347	9347					0.12551210236654242
ELRVLIVK	8	Unmodified	_ELRVLIVK_					0	0	0			REV__tr|A0A7D6ZSM5|A0A7D6ZSM5_9CLOTPyruvate,phosphatedikinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16395PE=3SV=1	REV__tr|A0A7D6ZSM5|A0A7D6ZSM5_9CLOTPyruvate,phosphatedikinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16395PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.315673828125	2	485.326402	968.638252	-0.39339	-0.00019092	0.1851	8.9832E-05	-0.2083	-0.00010109	485.32593992634196	69.596	0.40404	69.596	69.228	69.632	0					10	9	2	0	0	0	0.028476	1	6604	6604		24.203	6.8378	1	162410	+		8312	32190	6757	6767	9348	9348					0.1526780061634554
ELRVRVRLPDG	11	Unmodified	_ELRVRVRLPDG_					0	0	0		ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	MULTI-MSMS	OvCa9_classI_Rep3	3	437.25701904296875	3	437.261482	1308.76262	-5.2707	-0.0023047	-3.7102	-0.0016223	-8.981	-0.003927	437.2600785847716	155.33	1.4057	154.26	153.21	154.61	-1.073					75	32	3	0	0	0	0.7252	1	13330	13330		12.957	2.3707	1	37963			8313	8139	6758	6768	9349	9349					0.12058646365699133
ELSAAPKNVT	10	Unmodified	_ELSAAPKNVT_					0	0	0		SECISBP2|p.M455Hfs*105|1|0.09|ENSG00000187742|chr9:89341399-89341400|-/G|frameshift_variant;nc|ENSG00000187742|Q96T21-2|SECISBP2;nc|ENSG00000187742|Q96T21-3|SECISBP2;ENSG00000187742|ENST00000375807|SECISBP2	SECISBP2|p.M455Hfs*105|1|0.09|ENSG00000187742|chr9:89341399-89341400|-/G|frameshift_variant	SECISBP2|p.M455Hfs*105|1|0.09|ENSG00000187742|chr9:89341399-89341400|-/G|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.3003540039062	2	515.282389	1028.55022	0.34858	0.00017962	1.3936	0.0007181	1.7422	0.00089771	515.2823184136353	81.14	0.21094	81.14	81.037	81.248	0					6	4	2	0	0	0	0.026494	1	8339	8339		49.536	15.364	1	106810			8314	8428	6759	6769	9350	9350					0.03709135235044414
ELSAKFKSVV	10	Unmodified	_ELSAKFKSVV_					0	0	0			REV__ENSG00000278259|ENST00000614623|MYO19	REV__ENSG00000278259|ENST00000614623|MYO19	MULTI-MSMS	OvCa9_classI_Rep2	2	554.3231201171875	2	554.324057	1106.63356	-0.47697	-0.0002644	0.037076	2.0552E-05	-0.4399	-0.00024385	554.3240199899825	50.497	3.0682	47.703	47.381	50.449	-2.794					156	61	5	0	0	0	0.42962	1	3305	3305		64.207	2.0999	1	1546400	+		8315	23640	6760	6770	9351	9351					0.08450871682907746
ELSAWCSEH	9	Unmodified	_ELSAWCSEH_					0	0	0		ENST00000491612.1_1_22:46752558-46752900:+|nuORF	ENST00000491612.1_1_22:46752558-46752900:+|nuORF	ENST00000491612.1_1_22:46752558-46752900:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.8434448242188	2	531.221474	1060.42839	-2.3347	-0.0012403	1.3818	0.00073404	-0.95293	-0.00050622	531.2222890606788	87.597	0.75465	84.97	84.698	85.453	-2.6269					30	14	3	0	0	0	0.027462	1	7464	7464		27.882	0	1	45145			8316	12715	6761	6771	9352	9352					-0.09940230118991167
ELSAYEILT	9	Unmodified	_ELSAYEILT_					0	0	0			REV__nc|ENSG00000117114|O95490-2|ADGRL2	REV__nc|ENSG00000117114|O95490-2|ADGRL2	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.3470458984375	2	519.771322	1037.52809	1.4131	0.0007345	-0.69677	-0.00036216	0.71636	0.00037234	520.2746973766313	128.8	0.44583	128.57	128.48	128.92	-0.22696					11	8	2	0	0	0	0.027462	1	12669	12669		45.952	0	1	10590	+		8317	18336	6762	6772	9353	9353					0.010829107666040727
ELSCNDTF	8	Unmodified	_ELSCNDTF_					0	0	0		tr|A0A7D7A121|A0A7D7A121_9CLOTPenicillin-bindingprotein2OS=ClostridiumintestinaleOX=36845GN=HZF06_09905PE=4SV=1	tr|A0A7D7A121|A0A7D7A121_9CLOTPenicillin-bindingprotein2OS=ClostridiumintestinaleOX=36845GN=HZF06_09905PE=4SV=1	tr|A0A7D7A121|A0A7D7A121_9CLOTPenicillin-bindingprotein2OS=ClostridiumintestinaleOX=36845GN=HZF06_09905PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.2331237792969	2	464.689475	927.364398	-1.0817	-0.00050263	-2.825	-0.0013127	-3.9067	-0.0018154	464.68602457527953	34.494	0.18834	34.494	34.398	34.586	0					5	3	2	0	0	0	0.028476	1	1660	1660		18.324	1.8513	1	13526			8318	36020	6763	6773	9354	9354					-0.10219010275932305
ELSDIALRI	9	Unmodified	_ELSDIALRI_					0	0	0		ENST00000582381.1_1_17:26902119-26903857:-|nuORF;ENSG00000109107|ENST00000226253|ALDOC	ENST00000582381.1_1_17:26902119-26903857:-|nuORF	ENST00000582381.1_1_17:26902119-26903857:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	515.8031616210938	2	515.300581	1028.58661	2.0195	0.0010406	0.32167	0.00016576	2.3411	0.0012064	515.3006530445183	113.58	0.68157	113.58	113.38	114.06	0					31	16	3	0	0	0	0.083631	1	12944	12944		101.6	13.846	1	460500			8319	2699	6764	6774	9355	9355					0.07346012131756652
ELSDISSAR	9	Unmodified	_ELSDISSAR_					0	0	0		ENSG00000120210|ENST00000381641|INSL6	ENSG00000120210|ENST00000381641|INSL6	ENSG00000120210|ENST00000381641|INSL6	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.7693176269531	2	489.248546	976.482539	-0.33782	-0.00016528	-0.55017	-0.00026917	-0.88799	-0.00043445	489.2458976155805	56.406	0.60834	56.406	56.094	56.702	0					30	14	3	0	0	0	0.027462	1	4699	4699		20.947	9.4359	1	309820			8320	3419	6765	6775	9356	9356					-0.006643146957458157
ELSDPPIGDDD	11	Unmodified	_ELSDPPIGDDD_					0	0	0			REV__ZBED4|p.L187Qfs*37|1|0.07|ENSG00000100426|chr22:49884221-49884222|-/AG|frameshift_variant	REV__ZBED4|p.L187Qfs*37|1|0.07|ENSG00000100426|chr22:49884221-49884222|-/AG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	587.2952270507812	2	586.751315	1171.48808	-1.6363	-0.00096009	2.6765	0.0015704	1.0402	0.00061036	586.752551708902	118.66	0.52692	117.32	117.05	117.58	-1.3444					16	9	2	0	0	0	0.02557	1	11132	11132		31.53	3.6476	1	16579	+		8321	17416	6766	6776	9357	9357					-0.09080680694592047
ELSDRRRL	8	Unmodified	_ELSDRRRL_					0	0	0			REV__ENST00000344930.7_1_7:64126604-64126658:+|nuORF	REV__ENST00000344930.7_1_7:64126604-64126658:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	523.2890625	2	522.799072	1043.58359	-0.71671	-0.0003747	2.4787	0.0012959	1.762	0.00092118	522.7997326127226	94.856	1.6941	92.96	92.46	94.154	-1.8956					86	33	4	0	0	0	0.028476	1	6260	6260		47.657	1.6851	1	222250	+		8322	24686	6767	6777	9358	9358					0.06354181797610181
ELSEVVIVT	9	Unmodified	_ELSEVVIVT_					0	0	0		ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant;ENSG00000164199|ENST00000405460|ADGRV1;ENST00000509621.1_3_5:89989878-90055411:+|nuORF	ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	494.7821044921875	2	494.78169	987.548827	-1.0978	-0.00054319	2.1996	0.0010883	1.1018	0.00054514	494.7826271232193	61.627	1.8441	58.867	58.04	59.884	-2.7593					92	35	4	0	0	0	0.21395	1	4573	4573		73.975	0	1	363280			8323	42	6768	6778	9359	9359					0.054555011462980474
ELSFVKSLP	9	Unmodified	_ELSFVKSLP_					0	0	0			REV__nc|ENSG00000040199|Q6ZVD8-2|PHLPP2	REV__nc|ENSG00000040199|Q6ZVD8-2|PHLPP2	MULTI-MSMS	OvCa9_classI_Rep3	3	510.2928466796875	2	510.292225	1018.5699	-0.10295	-5.2533E-05	-0.35586	-0.00018159	-0.45881	-0.00023413	510.29192022253056	78.974	1.4952	76.634	76.264	77.759	-2.3399					95	29	5	0	0	0	0.44568	1	4231	4231		47.657	3.5405	1	970550	+		8324	16626	6769	6779	9360	9360					0.061355112458159056
ELSGCDQLW	9	Unmodified	_ELSGCDQLW_					0	0	0			REV__ENST00000526532.5_2_12:55361696-55367316:-|nuORF	REV__ENST00000526532.5_2_12:55361696-55367316:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.2701416015625	2	525.731674	1049.4488	2.1564	0.0011337	-3.4886	-0.0018341	-1.3321	-0.00070035	525.7296993498238	80.389	0.38062	80.389	80.148	80.529	0					13	8	2	0	0	0	0.027462	1	8233	8233		39.253	3.6345	1	204670	+		8325	27141	6770	6780	9361	9361					-0.07395059459145159
ELSGCILLSI	10	Unmodified	_ELSGCILLSI_					0	0	0			REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.3579652635712427|0.3175433071941228|2.1|429.0|129|3|anti-sense	REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.3579652635712427|0.3175433071941228|2.1|429.0|129|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.8074951171875	2	524.291368	1046.56818	0.31396	0.00016461	-3.0312	-0.0015892	-2.7172	-0.0014246	524.2911903261809	79.121	0.72594	77.381	77.048	77.774	-1.7398					17	13	2	0	0	0	0.026635	1	6601	6601		47.657	5.2612	1	18862	+		8326	28426	6771	6781	9362	9362					0.04676134165561052
ELSGCSRIFPE	11	Unmodified	_ELSGCSRIFPE_					0	0	0		ENST00000497691.5_1_6:3273291-3410459:-|nuORF	ENST00000497691.5_1_6:3273291-3410459:-|nuORF	ENST00000497691.5_1_6:3273291-3410459:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	620.2594604492188	2	619.297713	1236.58087	0.89473	0.0005541	3.4874	0.0021597	4.3821	0.0027138	619.2999363388313	142.9	0.92857	142.9	142.64	143.56	0					37	18	3	0	0	0	0.02557	1	16774	16774		24.519	0	1	101180			8327	12814	6772	6782	9363	9363					-0.02795454442184564
ELSHDQKF	8	Unmodified	_ELSHDQKF_					0	0	0			REV__ENSG00000189045|ENST00000601380|ANKDD1B	REV__ENSG00000189045|ENST00000601380|ANKDD1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.2828369140625	2	502.245806	1002.47706	-0.14924	-7.4956E-05	-0.70217	-0.00035266	-0.85142	-0.00042762	502.2453667572082	51.352	0.25589	51.352	51.248	51.504	0					7	5	2	0	0	0	0.028476	1	3943	3943		20.482	5.8177	1	83172	+		8328	22756	6773	6783	9364	9364					-0.024079934875658182
ELSHEYKN	8	Unmodified	_ELSHEYKN_					0	0	0		ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8;ENST00000554384.1_1_14:21876861-21881122:-|nuORF	ENSG00000100888|ENST00000646647|CHD8	ENSG00000100888|ENST00000646647|CHD8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.8049621582031	2	510.243264	1018.47197	0.045763	2.335E-05	0.10577	5.3966E-05	0.15153	7.7317E-05	510.74523045228744	112.54	0.65173	111.03	110.79	111.44	-1.5111					18	12	2	0	0	0	0.028476	1	10398	10398		17.365	0	1	29231			8329	2115	6774	6784	9365	9365					-0.03652297350186018
ELSHVQIPVML	11	Unmodified	_ELSHVQIPVML_					0	0	0		PIP4K2A|p.F134Tfs*25|1|0.13|ENSG00000150867|chr10:22591719-22591722|AAAA/-|frameshift_variant;ENSG00000150867|ENST00000376573|PIP4K2A	PIP4K2A|p.F134Tfs*25|1|0.13|ENSG00000150867|chr10:22591719-22591722|AAAA/-|frameshift_variant	PIP4K2A|p.F134Tfs*25|1|0.13|ENSG00000150867|chr10:22591719-22591722|AAAA/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	634.2894287109375	2	633.349748	1264.68494	1.1323	0.00071716	3.853	0.0024403	4.9853	0.0031575	633.352184654107	132.14	0.46585	132.14	131.9	132.36	0					17	9	2	0	0	0	0.025904	1	15377	15377		33.922	1.1711	1	233430			8330	5521	6775	6785	9366	9366					0.0631887238530453
ELSIRIDKS	9	Unmodified	_ELSIRIDKS_					0	0	0		ENSG00000133195|ENST00000255559|SLC39A11	ENSG00000133195|ENST00000255559|SLC39A11	ENSG00000133195|ENST00000255559|SLC39A11	MULTI-SECPEP	OvCa9_classI_Rep3	3	530.3116455078125	2	530.803488	1059.59242	0.47065	0.00024982	4.2037	0.0022313	4.6743	0.0024812	530.8055624375762	105.28	0.57349	103.93	103.62	104.2	-1.3482					28	10	4	0	0	0	0.027247	1	7402	7402		69.628	14.851	1	584060			8331	4211	6776	6786	9367	9367					0.0650111064342127
ELSIRIDKS	9	Unmodified	_ELSIRIDKS_					0	0	0		ENSG00000133195|ENST00000255559|SLC39A11	ENSG00000133195|ENST00000255559|SLC39A11	ENSG00000133195|ENST00000255559|SLC39A11	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	530.803488	1059.59242	-1.1538	-0.00061246	5.589	0.0029667	4.4352	0.0023542	530.8063270445069	105.89	0.60207	103.87	103.4	104	-2.0161	-0.028116	0.00024433	NaN	69.628	26	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	581000			8332	4211	6776	6786							0.0650111064342127
ELSIRVSPT	9	Unmodified	_ELSIRVSPT_					0	0	0		tr|A0A7D7A321|A0A7D7A321_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10850PE=4SV=1	tr|A0A7D7A321|A0A7D7A321_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10850PE=4SV=1	tr|A0A7D7A321|A0A7D7A321_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10850PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.7975158691406	2	501.284931	1000.55531	1.6643	0.00083431	1.7375	0.00087098	3.4018	0.0017053	501.28528906734743	79.495	0.55104	79.495	79.276	79.827	0					25	13	3	0	0	0	0.027425	1	8098	8098		69.628	23.655	1	3715500			8333	36100	6777	6787	9368	9368					0.05505439097669296
ELSISIRPV	9	Unmodified	_ELSISIRPV_					0	0	0			REV__nc|ENSG00000152582|Q9C093-2|SPEF2	REV__nc|ENSG00000152582|Q9C093-2|SPEF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.29364013671875	2	507.303124	1012.5917	2.4685	0.0012523	1.1102	0.0005632	3.5787	0.0018155	507.30351334695064	121.11	0.69402	121.11	120.92	121.61	0					20	15	2	0	0	0	0.027433	1	13940	13940		60.972	13.012	1	108450	+		8334	20295	6778	6788	9369	9369					0.08590315994376851
ELSISIRPV	9	Unmodified	_ELSISIRPV_					0	0	0			REV__nc|ENSG00000152582|Q9C093-2|SPEF2	REV__nc|ENSG00000152582|Q9C093-2|SPEF2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	507.303124	1012.5917	-0.93848	-0.00047609	1.8909	0.00095925	0.9524	0.00048315	507.3041307451112	121.61	0.29706	121.42	121.3	121.59	-0.19718	0.086137	0.0014916	NaN	60.972	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3701.5	+		8335	20295	6778	6788							0.08590315994376851
ELSISIRPV	9	Unmodified	_ELSISIRPV_					0	0	0			REV__nc|ENSG00000152582|Q9C093-2|SPEF2	REV__nc|ENSG00000152582|Q9C093-2|SPEF2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	507.303124	1012.5917	0.87669	0.00044475	-0.40044	-0.00020315	0.47624	0.0002416	507.3027304942066	122.49	0.41982	121.46	121.32	121.74	-1.0286	0.13163	-0.00083318	NaN	60.972	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8096.9	+		8336	20295	6778	6788							0.08590315994376851
ELSISNEIPK	10	Unmodified	_ELSISNEIPK_					0	0	0			REV__tr|A0A553SLJ9|A0A553SLJ9_NIACIriboflavinsynthaseOS=NialliacirculansOX=1397GN=ribEPE=4SV=1	REV__tr|A0A553SLJ9|A0A553SLJ9_NIACIriboflavinsynthaseOS=NialliacirculansOX=1397GN=ribEPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.8336181640625	2	565.308603	1128.60265	2.4798	0.0014018	0.65874	0.00037239	3.1385	0.0017742	565.8114516561984	99.859	0.70101	99.859	99.405	100.11	0					20	16	2	0	0	0	0.026519	1	10988	10988		68.846	14.124	1	305700	+		8337	30232	6779	6789	9370	9370					0.043496735779854134
ELSISYTCS	9	Unmodified	_ELSISYTCS_					0	0	0			REV__ENSG00000009724|ENST00000400897|MASP2	REV__ENSG00000009724|ENST00000400897|MASP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.23828125	2	501.726058	1001.43756	-0.53832	-0.00027009	-4.4796	-0.0022476	-5.018	-0.0025176	502.22597638453993	41.451	0.83219	41.451	41.149	41.982	0					23	18	2	0	0	0	0.027448	1	2560	2560		27.882	0	1	136270	+		8338	16467	6780	6790	9371	9371					-0.06309881553318064
ELSKHLPI	8	Unmodified	_ELSKHLPI_					0	0	0		tr|A0A553STY4|A0A553STY4_NIACIGlucuronylhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05880PE=3SV=1	tr|A0A553STY4|A0A553STY4_NIACIGlucuronylhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05880PE=3SV=1	tr|A0A553STY4|A0A553STY4_NIACIGlucuronylhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05880PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	468.2796325683594	2	468.779285	935.544017	1.0535	0.00049384	-1.4396	-0.00067487	-0.38618	-0.00018103	468.7782239759978	157.12	0.30106	157.12	157	157.3	0					8	5	2	0	0	0	0.028476	1	18404	18404		34.173	0	1	109370			8339	34550	6781	6791	9372	9372					0.07366661794185347
ELSKHLPIS	9	Unmodified	_ELSKHLPIS_					0	0	0		tr|A0A553STY4|A0A553STY4_NIACIGlucuronylhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05880PE=3SV=1	tr|A0A553STY4|A0A553STY4_NIACIGlucuronylhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05880PE=3SV=1	tr|A0A553STY4|A0A553STY4_NIACIGlucuronylhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05880PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.2677001953125	2	512.295299	1022.57605	0.80794	0.0004139	-0.59063	-0.00030258	0.21731	0.00011133	512.2945958303329	84.593	0.85512	81.93	81.639	82.494	-2.6629					37	17	3	0	0	0	0.027462	1	7084	7084		19.997	0	1	80179			8340	34550	6782	6792	9373	9373					0.06566029477335178
ELSKIIQKV	9	Unmodified	_ELSKIIQKV_					0	0	0		UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	529.3389282226562	2	529.334424	1056.6543	-0.7792	-0.00041246	0.59277	0.00031378	-0.18643	-9.8684E-05	529.3346368092341	69.665	1.3747	69.665	69.347	70.722	0					50	33	2	0	0	0	0.22621	1	6630	6630		71.877	5.4482	1	4309400			8341	3833	6783	6793	9374	9374					0.12823462062578983
ELSKISKLP	9	Unmodified	_ELSKISKLP_					0	0	0		tr|A0A7D6W1N2|A0A7D6W1N2_9CLOTProlyloligopeptidasefamilyserinepeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03840PE=4SV=1	tr|A0A7D6W1N2|A0A7D6W1N2_9CLOTProlyloligopeptidasefamilyserinepeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03840PE=4SV=1	tr|A0A7D6W1N2|A0A7D6W1N2_9CLOTProlyloligopeptidasefamilyserinepeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03840PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.32086181640625	2	507.813325	1013.6121	-0.048555	-2.4657E-05	1.7049	0.00086579	1.6564	0.00084113	507.81398730873894	101.77	0.51363	101.77	101.57	102.08	0					18	11	2	0	0	0	0.027343	1	11317	11317		58.782	21.623	1	466130			8342	35412	6784	6794	9375	9375					0.10583486654184071
ELSKLIVKY	9	Unmodified	_ELSKLIVKY_					0	0	0		tr|A0A7D6ZE96|A0A7D6ZE96_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12805PE=4SV=1	tr|A0A7D6ZE96|A0A7D6ZE96_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12805PE=4SV=1	tr|A0A7D6ZE96|A0A7D6ZE96_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12805PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.2694091796875	2	546.8368	1091.65905	-0.65092	-0.00035595	-1.7187	-0.00093984	-2.3696	-0.0012958	546.8358953190071	59.089	0.63979	59.089	58.774	59.414	0					25	16	2	0	0	0	0.027462	1	5048	5048		34.173	11.13	1	1370300			8343	35478	6785	6795	9376	9376					0.11688346205346534
ELSKLVSLPKP	11	Unmodified	_ELSKLVSLPKP_					0	0	0			REV__ENSG00000115760|ENST00000421745|BIRC6	REV__ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	OvCa9_classI_Rep2	2	605.8714599609375	2	605.873914	1209.73327	-4.9831	-0.0030191	1.7498	0.0010602	-3.2333	-0.001959	605.874829866227	157.02	0.88571	156.79	156.54	157.42	-0.22696					68	24	4	0	0	0	0.72324	1	15995	15995		21.686	0.73882	1	101120	+		8344	18266	6786	6796	9377	9377					0.13679689296827746
ELSKRLNH	8	Unmodified	_ELSKRLNH_					0	0	0		ENST00000582201.5_1_17:62781409-62811241:-|nuORF;ENSG00000225190|ENST00000430334|PLEKHM1	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	498.7840270996094	2	498.78289	995.551228	-0.34983	-0.00017449	0.020496	1.0223E-05	-0.32933	-0.00016426	498.78278064080916	58.761	0.47421	58.761	58.572	59.046	0					24	11	3	0	0	0	0.67745	1	5018	5018		47.916	1.9636	1	1775100			8345	9260	6787	6797	9378	9378					0.05327394394623752
ELSLKYLII	9	Unmodified	_ELSLKYLII_					0	0	0			REV__tr|A0A7D7ACD6|A0A7D7ACD6_9CLOTOligosacchariderepeatunitpolymeraseOS=ClostridiumintestinaleOX=36845GN=HZF06_18755PE=4SV=1	REV__tr|A0A7D7ACD6|A0A7D7ACD6_9CLOTOligosacchariderepeatunitpolymeraseOS=ClostridiumintestinaleOX=36845GN=HZF06_18755PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	546.3392944335938	2	546.339175	1090.6638	0.29118	0.00015908	-0.8174	-0.00044658	-0.52622	-0.00028749	546.3386096550684	124.38	1.4314	124.15	123.83	125.26	-0.23193					60	28	3	0	0	0	0.2422	1	12095	12095		69.628	5.4204	1	123040	+		8346	32687	6788	6798	9379	9379					0.12209230348094025
ELSLQHEGL	9	Unmodified	_ELSLQHEGL_					0	0	0		nc|ENSG00000154760|Q68D06-2|SLFN13;ENSG00000154760|ENST00000285013|SLFN13	nc|ENSG00000154760|Q68D06-2|SLFN13	nc|ENSG00000154760|Q68D06-2|SLFN13	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.267578125	2	513.266739	1024.51892	0.9461	0.0004856	-0.4889	-0.00025094	0.4572	0.00023466	513.266364363024	84.6	1.8418	81.937	81.685	83.526	-2.6629					65	37	2	0	0	0	0.44568	1	7097	7097		47.657	3.5405	1	227870			8347	5751	6789	6799	9380	9380					0.007645622009476938
ELSLRLIEP	9	Unmodified	_ELSLRLIEP_					0	0	0		ENST00000548281.5_1_12:54718997-54741610:+|nuORF	ENST00000548281.5_1_12:54718997-54741610:+|nuORF	ENST00000548281.5_1_12:54718997-54741610:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2935180664062	2	535.316232	1068.61791	1.8622	0.00099688	4.2887	0.0022958	6.1509	0.0032927	535.3186863286533	77.99	0.54022	77.99	77.714	78.254	0					13	12	2	0	0	0	0.027426	1	7849	7849		66.429	0	1	345380			8348	13560	6790	6800	9381	9381					0.08634585165850694
ELSLVFVDKP	10	Unmodified	_ELSLVFVDKP_					0	0	0		nc|ENSG00000151726|P33121-3|ACSL1;nc|ENSG00000151726|P33121-2|ACSL1;ENSG00000151726|ENST00000281455|ACSL1	nc|ENSG00000151726|P33121-3|ACSL1	nc|ENSG00000151726|P33121-3|ACSL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.8141479492188	2	573.823889	1145.63323	1.601	0.00091869	1.9532	0.0011208	3.5542	0.0020395	573.8246260960207	117.15	0.4152	117.15	116.95	117.37	0					21	8	4	0	0	0	0.02792	1	13406	13406		69.628	0	1	234210			8349	15095	6791	6801	9382	9382					0.06623451963037041
ELSMGPIQAN	10	Unmodified	_ELSMGPIQAN_					0	0	0		nc|ENSG00000177628|P04062-4|GBA1;nc|ENSG00000177628|P04062-5|GBA1;nc|ENSG00000177628|P04062-2|GBA1;ENSG00000177628|ENST00000368373|GBA1	nc|ENSG00000177628|P04062-4|GBA1	nc|ENSG00000177628|P04062-4|GBA1	MULTI-SECPEP	OvCa9_classI_Rep2	2	530.2984619140625	2	530.260599	1058.50665	-1.5757	-0.00083553	-0.87893	-0.00046606	-2.4546	-0.0013016	530.2596290317323	100.09	0.84193	99.263	98.865	99.707	-0.83051					22	16	3	0	0	0	0.026826	1	9120	9120		44.377	19.858	1	22591			8350	7701	6792	6802	9383	9383					-0.020267975337219468
ELSNQVSELI	10	Unmodified	_ELSNQVSELI_					0	0	0			REV__tr|A0A7D6ZWM0|A0A7D6ZWM0_9CLOTAldo/ketoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08540PE=4SV=1	REV__tr|A0A7D6ZWM0|A0A7D6ZWM0_9CLOTAldo/ketoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08540PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	566.3004760742188	2	566.298236	1130.58192	-1.1574	-0.00065545	-1.3633	-0.00077201	-2.5207	-0.0014275	566.2974538113468	101.45	1.4662	99.844	99.395	100.86	-1.6053					55	27	3	0	0	0	0.3094	1	6954	6954		79.713	7.8351	1	319970	+		8351	32296	6793	6803	9384	9384					0.021850831983556418
ELSPFLIKI	9	Unmodified	_ELSPFLIKI_					0	0	0			REV__tr|A0A7D6ZFX6|A0A7D6ZFX6_9CLOTtRNAN6-adenosinethreonylcarbamoyltransferaseOS=ClostridiumintestinaleOX=36845GN=tsaDPE=3SV=1	REV__tr|A0A7D6ZFX6|A0A7D6ZFX6_9CLOTtRNAN6-adenosinethreonylcarbamoyltransferaseOS=ClostridiumintestinaleOX=36845GN=tsaDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.3255615234375	2	530.326068	1058.63758	-0.11558	-6.1296E-05	-0.2571	-0.00013635	-0.37268	-0.00019764	530.3257803239003	128.78	2.4171	127.32	127	129.42	-1.4565					126	48	5	0	0	0	0.059253	1	12299	12299		113.41	3.2917	1	843930	+		8352	31986	6794	6804	9385	9385					0.11060961176622186
ELSPKRIKVEQ	11	Unmodified	_ELSPKRIKVEQ_					0	0	0		nc|ENSG00000138386|Q13506-2|NAB1	nc|ENSG00000138386|Q13506-2|NAB1	nc|ENSG00000138386|Q13506-2|NAB1	MULTI-MSMS	OvCa99_classI_Rep5	1	442.92926025390625	3	442.92951	1325.7667	0.29462	0.00013049	-0.66299	-0.00029366	-0.36837	-0.00016316	442.92925760803547	36.328	0.7662	36.328	36.074	36.84	0					44	16	4	0	0	0	0.61375	1	1902	1902		43.419	1.176	1	1836800			8353	15045	6795	6805	9386	9386					0.11684691068762731
ELSPPFRRDL	10	Unmodified	_ELSPPFRRDL_					0	0	0		nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2;ENST00000470139.1_2_1:43891781-43893406:+|nuORF	nc|ENSG00000198198|Q5T011-5|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-SECPEP	OvCa99_classI_Rep5	1	409.72222900390625	3	410.559417	1228.65642	0.56031	0.00023004	-3.6676	-0.0015058	-3.1073	-0.0012757	410.55793192720597	41.515	0.43546	41.515	41.33	41.766	0					14	9	2	0	0	0	0.026666	1	2634	2634		36.318	0	1	193820			8354	8795	6796	6806	9387	9387					0.051238908004052064
ELSPPPQLL	9	Unmodified	_ELSPPPQLL_					0	0	0			REV__ENST00000607322.1_1_9:99973694-100000842:-|nuORF	REV__ENST00000607322.1_1_9:99973694-100000842:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	497.78887939453125	2	497.2844	992.554247	1.4139	0.00070312	0.50144	0.00024936	1.9154	0.00095248	497.28359264950006	111.79	1.8717	110.68	110.2	112.07	-1.1038					75	37	5	0	0	0	0.53483	1	8150	8150		39.253	5.0803	1	330780	+		8355	28085	6797	6807	9388	9388					0.057672247287769096
ELSPTATPRTL	11	Unmodified	_ELSPTATPRTL_					0	0	0		nc|ENSG00000176953|Q8NCF5-3|NFATC2IP;nc|ENSG00000176953|Q8NCF5-2|NFATC2IP;ENSG00000176953|ENST00000320805|NFATC2IP	nc|ENSG00000176953|Q8NCF5-3|NFATC2IP	nc|ENSG00000176953|Q8NCF5-3|NFATC2IP	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.2840576171875	2	593.327328	1184.6401	2.8593	0.0016965	0.73567	0.00043649	3.595	0.002133	593.3272238830845	99.199	0.64593	99.199	98.801	99.447	0					18	15	2	0	0	0	0.025958	1	10958	10958		35.152	9.578	1	181740			8356	7643	6798	6808	9389	9389					0.055167648436281524
ELSQLLFRWR	10	Unmodified	_ELSQLLFRWR_					0	0	0			REV__ENSG00000121671|ENST00000616080|CRY2	REV__ENSG00000121671|ENST00000616080|CRY2	MULTI-SECPEP	OvCa99_classI_Rep5	1	449.263916015625	3	449.922578	1346.7459	0.046008	2.07E-05	-1.2283	-0.00055262	-1.1823	-0.00053192	449.92260892922945	24.012	0.2511	24.012	23.886	24.137	0					6	4	2	0	0	0	0.027298	1	389	389		16.717	0	1	13802	+		8357	18549	6799	6809	9390	9390					0.08640145479762396
ELSRIVLEV	9	Unmodified	_ELSRIVLEV_					0	0	0		nc|ENSG00000103264|Q5XUX0-2|FBXO31;ENSG00000103264|ENST00000311635|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	MULTI-MSMS	OvCa99_classI_Rep5	1	529.3176879882812	2	529.316232	1056.61791	1.6978	0.00089866	0.15853	8.3914E-05	1.8563	0.00098258	529.3162529619437	108.8	0.96181	108.8	108.5	109.46	0					59	21	4	0	0	0	0.010652	2	12306	12306;12330		166.68	40.865	1	3658500			8358	2301	6800	6810	9391;9392	9391					0.09186585165844008
ELSRLQEP	8	Unmodified	_ELSRLQEP_					0	0	0			REV__ZHX3|p.A626S|1|0.13|ENSG00000174306|chr20:41203041-41203041|C/A|missense_variant	REV__ZHX3|p.A626S|1|0.13|ENSG00000174306|chr20:41203041-41203041|C/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.3147888183594	2	486.261456	970.50836	0.12863	6.2547E-05	-0.52202	-0.00025384	-0.39339	-0.00019129	486.2609531776177	64.977	0.77492	61.492	61.212	61.987	-3.4854					30	15	3	0	0	0	0.028476	1	4677	4677		24.203	0	1	79950	+		8359	32771	6801	6811	9393	9393					0.02192579546522211
ELSRLQEP	8	Unmodified	_ELSRLQEP_					0	0	0			REV__ZHX3|p.A626S|1|0.13|ENSG00000174306|chr20:41203041-41203041|C/A|missense_variant	REV__ZHX3|p.A626S|1|0.13|ENSG00000174306|chr20:41203041-41203041|C/A|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	486.261456	970.50836	-0.25499	-0.00012399	-4.4779	-0.0021774	-4.7329	-0.0023014	486.2605389778886	64.384	0.42138	61.66	61.389	61.811	-2.7246	0.083901	-0.0029827	NaN	24.203	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6684.5	+		8360	32771	6801	6811							0.02192579546522211
ELSSKIKLP	9	Unmodified	_ELSSKIKLP_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.80462646484375	2	507.813325	1013.6121	-0.084868	-4.3097E-05	0.15984	8.1169E-05	0.074973	3.8072E-05	507.8134467259732	75.528	0.24354	72.59	72.497	72.741	-2.9389					7	4	2	0	0	0	0.027462	1	5972	5972		16.473	0	1	9029.3			8361	1212	6802	6812	9394	9394					0.10583486654184071
ELSSKLLQP	9	Unmodified	_ELSSKLLQP_					0	0	0		ENSG00000185163|ENST00000397333|DDX51	ENSG00000185163|ENST00000397333|DDX51	ENSG00000185163|ENST00000397333|DDX51	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7861022949219	2	507.795132	1013.57571	-0.6903	-0.00035053	-0.68138	-0.000346	-1.3717	-0.00069653	507.795086252332	68.172	0.27811	68.172	67.996	68.274	0					10	6	2	0	0	0	0.027446	1	6434	6434		42.864	0	1	586290			8362	8231	6803	6813	9395	9395					0.06946609757483202
ELSSNRLF	8	Unmodified	_ELSSNRLF_					0	0	0			REV__tr|A0A7D6ZUY4|A0A7D6ZUY4_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01635PE=4SV=1	REV__tr|A0A7D6ZUY4|A0A7D6ZUY4_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01635PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	482.7603759765625	2	483.256174	964.497795	-0.035008	-1.6918E-05	-1.1384	-0.00055016	-1.1735	-0.00056708	483.25527746748173	57.426	1.0185	54.082	53.527	54.546	-3.3449					28	19	2	0	0	0	0.028476	1	3777	3777		50.025	0	1	26942	+		8363	32232	6804	6814	9396	9396					0.014125968921121057
ELSVMNKRI	9	Unmodified	_ELSVMNKRI_					0	0	0			REV__ENST00000514414.1_1_4:74951996-74952332:-|nuORF	REV__ENST00000514414.1_1_4:74951996-74952332:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.8178100585938	2	545.307884	1088.60121	1.82	0.00099247	-1.864	-0.0010165	-0.044018	-2.4003E-05	545.3067951109191	83.859	0.79858	83.859	83.463	84.261	0					25	18	2	0	0	0	0.027462	1	8686	8686		37.159	9.2769	1	632590	+		8364	26982	6805	6815	9397	9397					0.060457610082494284
ELSVVFDPD	9	Unmodified	_ELSVVFDPD_					0	0	0			REV__ENST00000479994.1_1_3:121377041-121379717:-|nuORF	REV__ENST00000479994.1_1_3:121377041-121379717:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	511.28631591796875	2	510.747847	1019.48114	-0.34493	-0.00017617	-2.2499	-0.0011491	-2.5948	-0.0013253	510.7463966109576	94.996	1.4313	93.896	93.411	94.842	-1.0995					45	28	2	0	0	0	0.027462	1	8518	8518		44.117	8.9161	1	24556	+		8365	26449	6806	6816	9398	9398					-0.027819487845135882
ELSYLIDAPA	10	Unmodified	_ELSYLIDAPA_					0	0	0		tr|A0A553SF60|A0A553SF60_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08285PE=4SV=1	tr|A0A553SF60|A0A553SF60_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08285PE=4SV=1	tr|A0A553SF60|A0A553SF60_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08285PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	545.3176879882812	2	546.284597	1090.55464	-2.112	-0.0011538	3.2418	0.0017709	1.1298	0.00061717	546.2858826007698	138.88	1.0821	137.82	137.44	138.52	-1.0595					46	21	3	0	0	0	0.026956	1	11337	11337		34.173	5.023	1	10843			8366	32994	6807	6817	9399	9399					0.012985996579345738
ELTADTGLYLA	11	Unmodified	_ELTADTGLYLA_					0	0	0		ENST00000479767.1_1_9:139648952-139650038:-|nuORF;ENSG00000204001|ENST00000371688|LCN8;nc|ENSG00000204001|Q6JVE9|LCN8;ENST00000480597.5_1_9:139648952-139651016:-|nuORF;ENST00000482893.1_1_9:139649556-139650038:-|nuORF	ENST00000479767.1_1_9:139648952-139650038:-|nuORF	ENST00000479767.1_1_9:139648952-139650038:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	583.8014526367188	2	583.800611	1165.58667	-1.251	-0.00073034	4.3072	0.0025146	3.0562	0.0017842	583.8030699874896	54.091	2.1426	51.277	50.677	52.82	-2.8139					121	42	5	0	0	0	0.65947	1	3738	3738		39.253	7.723	1	1035800			8367	8943	6808	6818	9400	9400					0.010499673411004551
ELTADTGLYLA	11	Unmodified	_ELTADTGLYLA_					0	0	0		ENST00000479767.1_1_9:139648952-139650038:-|nuORF;ENSG00000204001|ENST00000371688|LCN8;nc|ENSG00000204001|Q6JVE9|LCN8;ENST00000480597.5_1_9:139648952-139651016:-|nuORF;ENST00000482893.1_1_9:139649556-139650038:-|nuORF	ENST00000479767.1_1_9:139648952-139650038:-|nuORF	ENST00000479767.1_1_9:139648952-139650038:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	583.802490234375	2	583.800611	1165.58667	0.97841	0.0005712	3.0849	0.0018009	4.0633	0.0023721	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.71498	1	1434	1434		24.519	3.5723	1	155970			8368	8943	6808	6818	9401	9401					0.010499673411004551
ELTAFAATW	9	Unmodified	_ELTAFAATW_					0	0	0		L1PB1_dup5905|chr7:93807211-93809400:+|8.337698263303487|0.2056128638309657|5.34|416.0|47|2|sense	L1PB1_dup5905|chr7:93807211-93809400:+|8.337698263303487|0.2056128638309657|5.34|416.0|47|2|sense	L1PB1_dup5905|chr7:93807211-93809400:+|8.337698263303487|0.2056128638309657|5.34|416.0|47|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.2327575683594	2	505.2531	1008.49165	-0.62274	-0.00031464	-3.2486	-0.0016414	-3.8714	-0.001956	505.2512050386168	61.479	0.50368	61.479	61.2	61.704	0					22	11	3	0	0	0	0.027462	1	5446	5446		18.324	3.6603	1	1254400			8369	14778	6809	6819	9402	9402					-0.01225921339425895
ELTALQPQLIL	11	Unmodified	_ELTALQPQLIL_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8694458007812	2	619.871371	1237.72819	-3.6059	-0.0022352	0.4254	0.00026369	-3.1805	-0.0019715	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.70142	1	12953	12953		29.17	4.6509	1	664560			8370	5956	6810	6820	9403	9403					0.11883385434248339
ELTDEEIL	8	Unmodified	_ELTDEEIL_					0	0	0		WDR44-PHF21A|1|fusion;WDR44-PHF21A|2|fusion;nc|ENSG00000131725|Q5JSH3-4|WDR44;nc|ENSG00000131725|Q5JSH3-2|WDR44;ENSG00000131725|ENST00000254029|WDR44	WDR44-PHF21A|1|fusion	WDR44-PHF21A|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.2513732910156	2	481.239855	960.465157	-0.24271	-0.0001168	-1.3701	-0.00065934	-1.6128	-0.00077614	481.23903141505974	43.251	0.72307	43.251	43.057	43.78	0					30	16	3	0	0	0	0.028476	1	2828	2828		42.474	13.325	1	1088400			8371	4085	6811	6821	9404	9404					-0.016656550214179333
ELTDKLLIF	9	Unmodified	_ELTDKLLIF_					0	0	0		ENSG00000113734|ENST00000351486|BNIP1;nc|ENSG00000113734|Q12981-1|BNIP1;nc|ENSG00000113734|Q12981-2|BNIP1;nc|ENSG00000113734|Q12981-3|BNIP1	ENSG00000113734|ENST00000351486|BNIP1	ENSG00000113734|ENST00000351486|BNIP1	MULTI-MSMS	OvCa9_classI_Rep2	2	546.3200073242188	2	546.320983	1090.62741	-1.1603	-0.0006339	1.1543	0.00063063	-0.0059886	-3.2717E-06	546.3212828896337	140.04	0.97914	139.81	139.5	140.48	-0.22696					42	19	3	0	0	0	0.53483	1	14010	14010		39.253	0.23134	1	96543			8372	2991	6812	6822	9405	9405					0.08572353451381787
ELTEKTGKL	9	Unmodified	_ELTEKTGKL_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-SECPEP	OvCa9_classI_Rep2	2	509.7706298828125	2	509.792589	1017.57063	-0.46734	-0.00023825	1.6972	0.00086524	1.2299	0.00062699	509.79333664358154	59.378	1.3992	56.598	55.986	57.386	-2.7801					66	26	3	0	0	0	0.027158	1	4375	4375		83.647	17.844	1	194250			8373	3800	6813	6823	9406	9406					0.06254305894856316
ELTETLETL	9	Unmodified	_ELTETLETL_					0	0	0			REV__tr|A0A553SIP8|A0A553SIP8_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_15265PE=4SV=1	REV__tr|A0A553SIP8|A0A553SIP8_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_15265PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.248779296875	2	524.774062	1047.53357	-0.067	-3.516E-05	0.99716	0.00052329	0.93016	0.00048813	524.7747650792904	58.066	0.16957	58.066	57.984	58.153	0					5	3	2	0	0	0	0.027462	1	4920	4920		19.997	0	1	35523	+		8374	29915	6814	6824	9407	9407					0.011705895584555037
ELTFWDCKFG	10	Unmodified	_ELTFWDCKFG_					0	0	0			REV__ENSG00000118308|ENST00000556887|IRAG2	REV__ENSG00000118308|ENST00000556887|IRAG2	MULTI-SECPEP	OvCa99_classI_Rep5	1	416.7117614746094	3	415.858475	1244.5536	-0.30783	-0.00012802	3.9901	0.0016593	3.6823	0.0015313	415.859947690619	36.931	0.22725	36.931	36.796	37.023	0					6	4	2	0	0	0	0.027089	1	1975	1975		19.263	0	1	21461	+		8375	18391	6815	6825	9408	9408					-0.0588993798262436
ELTGTILRR	9	Unmodified	_ELTGTILRR_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.7861938476562	2	529.819473	1057.62439	-0.30165	-0.00015982	0.26533	0.00014058	-0.036312	-1.9239E-05	529.8190899075269	69.42	0.52824	69.42	69.228	69.756	0					19	12	3	0	0	0	0.027462	1	6583	6583		51.335	12.083	1	535690	+		8376	21063	6816	6826	9409	9409					0.09788523117254044
ELTIDHWL	8	Unmodified	_ELTIDHWL_					0	0	0		tr|A0A553SQB4|A0A553SQB4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23690PE=4SV=1	tr|A0A553SQB4|A0A553SQB4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23690PE=4SV=1	tr|A0A553SQB4|A0A553SQB4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23690PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.2838134765625	2	513.766374	1025.5182	1.8615	0.00095638	-1.0399	-0.00053425	0.82162	0.00042212	514.2658940100438	82.097	0.28699	82.097	81.854	82.141	0					9	6	2	0	0	0	0.028476	1	8479	8479		42.474	0	1	80824			8377	34141	6817	6827	9410	9410					0.0064576755189591495
ELTIIKSVYSI	11	Unmodified	_ELTIIKSVYSI_					0	0	0			REV__ENSG00000180185|ENST00000427358|FAHD1	REV__ENSG00000180185|ENST00000427358|FAHD1	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3687744140625	2	633.371204	1264.72785	-4.1446	-0.0026251	0.87395	0.00055353	-3.2707	-0.0020716	633.3716506579397	149.94	3.0119	148.99	147.85	150.86	-0.9512					218	59	5	0	0	0	0.72466	1	12800	12800		19.997	1.7347	1	281260	+		8378	22162	6818	6828	9411	9411					0.10607965714416423
ELTIPNDDP	9	Unmodified	_ELTIPNDDP_					0	0	0		PCBP2-AMHR2|6|fusion;PCBP2-AMHR2|4|fusion;PCBP2-AMHR2|7|fusion;PCBP2-AMHR2|5|fusion;PCBP2-AMHR2|1|fusion;PCBP2-AMHR2|3|fusion;PCBP2-AMHR2|2|fusion	PCBP2-AMHR2|6|fusion	PCBP2-AMHR2|6|fusion	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.81268310546875	2	507.242929	1012.47131	-0.61985	-0.00031441	-3.0527	-0.0015485	-3.6726	-0.0018629	507.2427831392152	109.48	0.63171	108.33	107.93	108.56	-1.1444					22	11	3	0	0	0	0.027462	1	7823	7823		45.972	16.131	1	18939			8379	15477	6819	6829	9412	9412					-0.034431367899060206
ELTKKKVE	8	Unmodified	_ELTKKKVE_					0	0	0			REV__nc|ENSG00000075292|Q14966-4|ZNF638	REV__nc|ENSG00000075292|Q14966-4|ZNF638	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.7693176269531	2	487.797675	973.580796	-0.18193	-8.8743E-05	0.89085	0.00043456	0.70893	0.00034581	487.797839077071	56.698	0.55089	56.698	56.498	57.048	0					19	12	2	0	0	0	0.028476	1	4699	4699		31.955	0	1	437450	+		8380	16969	6820	6830	9413	9413					0.09294913620090028
ELTKKLLP	8	Unmodified	_ELTKKLLP_					0	0	0			REV__ENSG00000144554|ENST00000675286|FANCD2	REV__ENSG00000144554|ENST00000675286|FANCD2	MULTI-SECPEP	OvCa9_classI_Rep3	3	472.2951354980469	2	471.305136	940.595718	-0.14368	-6.7715E-05	-0.076416	-3.6015E-05	-0.22009	-0.00010373	471.30500971166066	95.321	0.7991	93.426	93.161	93.96	-1.8956					27	15	2	0	0	0	0.028476	1	6198	6198		74.255	5.4682	1	43759	+		8381	19918	6821	6831	9414	9414					0.12304405488100656
ELTKVPRRGR	10	Unmodified	_ELTKVPRRGR_					0	0	0			REV__ENSG00000170613|ENST00000302938|GARIN3	REV__ENSG00000170613|ENST00000302938|GARIN3	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3690795898438	2	606.370195	1210.72584	-2.0217	-0.0012259	1.0061	0.00061009	-1.0156	-0.00061581	606.3706888805716	149.57	2.6994	148.14	147.52	150.22	-1.4344					165	58	4	0	0	0	0.62299	1	14824	14824		39.253	8.9351	1	304910	+		8382	21552	6822	6832	9415	9415					0.12890394539772387
ELTLCTEM	8	Unmodified	_ELTLCTEM_					0	0	0		chr7:73039781-73041063|174|13.29|0.65|4.35|+|0|PMS2P8,None|1	chr7:73039781-73041063|174|13.29|0.65|4.35|+|0|PMS2P8,None|1	chr7:73039781-73041063|174|13.29|0.65|4.35|+|0|PMS2P8,None|1	MULTI-MSMS	OvCa9_classI_Rep2	2	470.2115783691406	2	470.211729	938.408905	0.22869	0.00010753	-1.3424	-0.00063119	-1.1137	-0.00052366	470.21095810442347	111.25	1.4293	111.11	110.73	112.16	-0.13961					80	28	4	0	0	0	0.7043	1	10505	10505		42.474	0	1	321870			8383	530	6823	6833	9416	9416					-0.06276322454084493
ELTLHGMKT	9	Unmodified	_ELTLHGMKT_					0	0	0			REV__ENSG00000170832|ENST00000300896|USP32	REV__ENSG00000170832|ENST00000300896|USP32	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.309814453125	2	515.273509	1028.53247	-0.76823	-0.00039585	-2.1871	-0.0011269	-2.9553	-0.0015228	515.2734968971201	99.54	0.82816	97.214	96.639	97.468	-2.3253					21	15	2	0	0	0	0.027462	1	8888	8888		30.318	8.3578	1	8556.5	+		8384	21564	6824	6834	9417	9417					0.01934096708555444
ELTLRTDL	8	Unmodified	_ELTLRTDL_					0	0	0		ENST00000529712.5_1_11:47690447-47736202:-|nuORF;ENSG00000165923|ENST00000525123|AGBL2	ENST00000529712.5_1_11:47690447-47736202:-|nuORF	ENST00000529712.5_1_11:47690447-47736202:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.27911376953125	2	480.771657	959.528761	-0.20145	-9.6851E-05	-1.2768	-0.00061386	-1.4783	-0.00071072	480.7714480327201	77.777	0.62994	74.961	74.584	75.214	-2.8165					16	12	2	0	0	0	0.028476	1	6255	6255		40.778	0	1	87693			8385	6614	6825	6835	9418	9418					0.04737750206345481
ELTLSQLPPRL	11	Unmodified	_ELTLSQLPPRL_					0	0	0		ENST00000521811.5_3_17:4854387-4855051:+|nuORF	ENST00000521811.5_3_17:4854387-4855051:+|nuORF	ENST00000521811.5_3_17:4854387-4855051:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	422.919189453125	3	422.918722	1265.73434	-0.42407	-0.00017935	1.0922	0.0004619	0.6681	0.00028255	422.9191804294928	74.511	2.5984	72.54	72.114	74.713	-1.9711					157	49	5	0	0	0	0.51772	1	6119	6119		52.167	8.5164	1	1026300			8386	13130	6826	6836	9419	9419					0.11209903665758247
ELTLSQLPPRL	11	Unmodified	_ELTLSQLPPRL_					0	0	0		ENST00000521811.5_3_17:4854387-4855051:+|nuORF	ENST00000521811.5_3_17:4854387-4855051:+|nuORF	ENST00000521811.5_3_17:4854387-4855051:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	422.91949462890625	3	422.918722	1265.73434	-0.036263	-1.5336E-05	0.8095	0.00034235	0.77324	0.00032702	422.9190110204645	75.916	2.7671	73.545	72.861	75.628	-2.3715					169	53	5	0	0	0	0.51772	1	3867	3867		52.167	18.081	1	908720			8387	13130	6826	6836	9420	9420					0.11209903665758247
ELTLSQLPPRL	11	Unmodified	_ELTLSQLPPRL_					0	0	0		ENST00000521811.5_3_17:4854387-4855051:+|nuORF	ENST00000521811.5_3_17:4854387-4855051:+|nuORF	ENST00000521811.5_3_17:4854387-4855051:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	422.9197082519531	3	422.918722	1265.73434	-0.455	-0.00019243	1.355	0.00057305	0.89999	0.00038062	422.9192596252898	76.584	2.3986	73.645	73.128	75.526	-2.9389					139	49	4	0	0	0	0.57194	1	6095	6095		47.228	8.4741	1	766350			8388	13130	6826	6836	9421	9421					0.11209903665758247
ELTLVLTAIG	10	Unmodified	_ELTLVLTAIG_					0	0	0		nc|ENSG00000135439|Q99490-2|AGAP2;nc|ENSG00000135439|Q99490|AGAP2;ENSG00000135439|ENST00000547588|AGAP2	nc|ENSG00000135439|Q99490-2|AGAP2	nc|ENSG00000135439|Q99490-2|AGAP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.2811279296875	2	515.313158	1028.61176	0.20701	0.00010667	-3.9167	-0.0020183	-3.7097	-0.0019116	516.3134537146004	74.026	0.45701	74.026	73.792	74.249	0					22	11	3	0	0	0	0.026849	1	7289	7289		40.778	3.6191	1	627840			8389	4381	6827	6837	9422	9422					0.09860066934311362
ELTLWEDLFG	10	Unmodified	_ELTLWEDLFG_					0	0	0			REV__ENSG00000139641|ENST00000394048|ESYT1	REV__ENSG00000139641|ENST00000394048|ESYT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	612.3257446289062	2	611.803154	1221.59175	1.1585	0.00070876	0.278	0.00017008	1.4365	0.00087884	611.8017300896552	150.93	0.5023	150.93	150.69	151.2	0					13	9	2	0	0	0	0.027021	1	17695	17695		29.15	8.2026	1	27344	+		8390	19626	6828	6838	9423	9423					-0.010177287963188064
ELTLYSKSC	9	Unmodified	_ELTLYSKSC_					0	0	0			REV__nc|ENSG00000204681|Q9UBS5-5|GABBR1	REV__nc|ENSG00000204681|Q9UBS5-5|GABBR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.8146362304688	2	522.257525	1042.5005	-1.1145	-0.00058206	-1.4044	-0.00073347	-2.5189	-0.0013155	522.2561637159047	69.757	1.222	66.275	65.565	66.787	-3.4812					29	24	2	0	0	0	0.027462	1	5186	5186		30.318	10.958	1	37561	+		8391	23178	6829	6839	9424	9424					-0.019053157652479058
ELTMAALCGRL	11	Unmodified	_ELTMAALCGRL_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.7830200195312	2	589.307026	1176.5995	0.57592	0.0003394	-1.8399	-0.0010843	-1.264	-0.00074486	589.8093208608547	140.98	0.49078	140.98	140.59	141.08	0					10	9	2	0	0	0	0.02557	1	16451	16451		12.812	0	1	28714			8392	13545	6830	6840	9425	9425					0.018263839279825334
ELTPPAKREIL	11	Unmodified	_ELTPPAKREIL_					0	0	0		nc|ENSG00000111305|Q2KHT4-3|GSG1;nc|ENSG00000111305|Q2KHT4-6|GSG1;nc|ENSG00000111305|Q2KHT4|GSG1;ENSG00000111305|ENST00000651961|GSG1	nc|ENSG00000111305|Q2KHT4-3|GSG1	nc|ENSG00000111305|Q2KHT4-3|GSG1	MULTI-MSMS	OvCa9_classI_Rep2	2	422.9191589355469	3	422.918722	1265.73434	-0.42407	-0.00017935	1.0922	0.0004619	0.6681	0.00028255	422.9191804294928	74.511	2.5984	72.54	72.114	74.713	-1.9711					157	49	5	0	0	0	0.41331	1	6101	6101		60.167	10.133	1	1026300			8393	2819	6831	6841	9426	9426					0.11209903665758247
ELTQNPLKK	9	Unmodified	_ELTQNPLKK_					0	0	0		nc|ENSG00000114268|Q16877-2|PFKFB4;ENSG00000114268|ENST00000232375|PFKFB4;ENST00000490115.5_1_3:48586091-48594264:-|nuORF	nc|ENSG00000114268|Q16877-2|PFKFB4	nc|ENSG00000114268|Q16877-2|PFKFB4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.2796020507812	2	535.813856	1069.61316	-1.4896	-0.00079815	-1.526	-0.00081765	-3.0156	-0.0016158	535.8123919861274	74.034	0.61512	70.803	70.337	70.952	-3.2308					24	12	3	0	0	0	0.027462	1	5752	5752		27.882	0	1	148390			8394	14970	6832	6842	9427	9427					0.08113701023080466
ELTTKIIR	8	Unmodified	_ELTTKIIR_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa9_classI_Rep3	3	487.3060302734375	2	487.305667	972.596781	-0.070701	-3.4453E-05	0.89554	0.0004364	0.82484	0.00040195	487.30610823520095	105.15	0.88399	103.8	103.47	104.35	-1.3482					42	16	4	0	0	0	0.67745	1	7364	7364		47.916	0	1	343850	+		8395	28942;32737;28943	6833	6843	9428	9428					0.10938619857006415
ELTTLPVLY	9	Unmodified	_ELTTLPVLY_					0	0	0		ENST00000527544.5_1_11:65480238-65482390:+|nuORF;nc|ENSG00000172977|Q92993-2|KAT5;nc|ENSG00000172977|Q92993-4|KAT5;nc|ENSG00000172977|Q92993|KAT5;ENSG00000172977|ENST00000341318|KAT5	ENST00000527544.5_1_11:65480238-65482390:+|nuORF	ENST00000527544.5_1_11:65480238-65482390:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.7246704101562	2	524.799883	1047.58521	-0.36727	-0.00019275	-2.6552	-0.0013935	-3.0225	-0.0015862	524.7987042188755	60.727	0.50724	60.727	60.477	60.984	0					23	11	3	0	0	0	0.027462	1	5345	5345		31.955	0	1	506810			8396	7336	6834	6844	9429	9429					0.06332378042998243
ELTVLSPLKGL	11	Unmodified	_ELTVLSPLKGL_					0	0	0		L1MB3_dup1513|chr1:246270299-246273131:-|1.1805691521590191|0.3959605958472513|1.58|429.0|190|3|anti-sense	L1MB3_dup1513|chr1:246270299-246273131:-|1.1805691521590191|0.3959605958472513|1.58|429.0|190|3|anti-sense	L1MB3_dup1513|chr1:246270299-246273131:-|1.1805691521590191|0.3959605958472513|1.58|429.0|190|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	585.3611450195312	2	585.360639	1168.70673	-2.8233	-0.0016527	2.6303	0.0015397	-0.19299	-0.00011297	585.3620236959634	125.95	1.4725	124.53	124.19	125.66	-1.4143					77	29	4	0	0	0	0.66495	1	11954	11954		38.754	2.3069	1	183110			8397	14595	6835	6845	9430	9430					0.1291200040552667
ELTVPIDVI	9	Unmodified	_ELTVPIDVI_					0	0	0			REV__tr|A0A553SMU4|A0A553SMU4_NIACIFAD-bindingPCMH-typedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23080PE=4SV=1	REV__tr|A0A553SMU4|A0A553SMU4_NIACIFAD-bindingPCMH-typedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23080PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.79071044921875	2	499.792058	997.569563	0.55653	0.00027815	-3.2785	-0.0016386	-2.722	-0.0013604	499.7902846838564	35.344	1.1491	32.495	32.19	33.339	-2.849					46	22	3	0	0	0	0.6653	1	1145	1145		24.203	0	1	102760	+		8398	30371	6836	6846	9431	9431					0.07068091525934506
ELTWNNEYI	9	Unmodified	_ELTWNNEYI_					0	0	0			REV__tr|A0A553SLH7|A0A553SLH7_NIACID-alanyl-D-alaninecarboxypeptidasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20645PE=4SV=1	REV__tr|A0A553SLH7|A0A553SLH7_NIACID-alanyl-D-alaninecarboxypeptidasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20645PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	591.2815551757812	2	591.277303	1180.54005	1.5403	0.00091072	0.39831	0.00023551	1.9386	0.0011462	591.277442134422	147.7	1.6114	147.7	147.36	148.97	0					70	32	4	0	0	0	0.44568	1	17318	17318		47.657	0.8909	1	859910	+		8399	30226	6837	6847	9432	9432					-0.042994724901973314
ELTYRLKIL	9	Unmodified	_ELTYRLKIL_					0	0	0		tr|A0A7D7A6F3|A0A7D7A6F3_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10345PE=4SV=1	tr|A0A7D7A6F3|A0A7D7A6F3_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10345PE=4SV=1	tr|A0A7D7A6F3|A0A7D7A6F3_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10345PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	574.8388671875	2	574.855524	1147.69649	-0.87296	-0.00050183	-3.4379	-0.0019763	-4.3109	-0.0024781	574.853367525008	91.477	0.91292	88.934	88.553	89.466	-2.5425					28	17	2	0	0	0	0.027462	1	7958	7958		56.721	22.549	1	49419			8400	36193	6838	6848	9433	9433					0.12855437470943798
ELVAKTSKN	9	Unmodified	_ELVAKTSKN_					0	0	0			REV__ENSG00000137090|ENST00000382276|DMRT1	REV__ENSG00000137090|ENST00000382276|DMRT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.2884826660156	2	495.284931	988.55531	0.77728	0.00038497	2.8168	0.0013951	3.5941	0.0017801	495.28623750914176	110.62	1.8947	109.02	108.75	110.65	-1.6011					75	35	3	0	0	0	0.53483	1	10236	10236		39.253	3.6345	1	550260	+		8401	19433	6839	6849	9434	9434					0.06057439097673978
ELVDQSQLN	9	Unmodified	_ELVDQSQLN_					0	0	0			REV__tr|A0A7D6VSI5|A0A7D6VSI5_9CLOTV-typeATPsynthasesubunitIOS=ClostridiumintestinaleOX=36845GN=HZF06_16700PE=3SV=1	REV__tr|A0A7D6VSI5|A0A7D6VSI5_9CLOTV-typeATPsynthasesubunitIOS=ClostridiumintestinaleOX=36845GN=HZF06_16700PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.2967529296875	2	523.261653	1044.50875	-0.50353	-0.00026348	-3.1361	-0.001641	-3.6396	-0.0019045	523.2601669398143	99.648	0.29789	98.818	98.617	98.914	-0.83052					9	5	2	0	0	0	0.02744	1	9097	9097		62.107	20.681	1	8045.4	+		8402	31506	6840	6850	9435	9435					-0.011720455242766548
ELVDQSQLN	9	Unmodified	_ELVDQSQLN_					0	0	0			REV__tr|A0A7D6VSI5|A0A7D6VSI5_9CLOTV-typeATPsynthasesubunitIOS=ClostridiumintestinaleOX=36845GN=HZF06_16700PE=3SV=1	REV__tr|A0A7D6VSI5|A0A7D6VSI5_9CLOTV-typeATPsynthasesubunitIOS=ClostridiumintestinaleOX=36845GN=HZF06_16700PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	523.261653	1044.50875	-1.3649	-0.00071419	-2.9611	-0.0015495	-4.326	-0.0022636	523.2599928284523	100.92	0.25407	98.657	98.446	98.7	-2.2665	-0.080283	0.00013675	NaN	62.107	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18114	+		8403	31506	6840	6850							-0.011720455242766548
ELVDVRVPL	9	Unmodified	_ELVDVRVPL_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000584025.1_1_17:73738673-73744941:+|nuORF	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.79345703125	2	520.310949	1038.60735	-0.29399	-0.00015297	0.26788	0.00013938	-0.026107	-1.3584E-05	520.3111536705419	121.92	1.5653	120.57	120.21	121.77	-1.3479					37	30	2	0	0	0	0.027426	1	11556	11556		66.429	27.623	1	17059			8404	4140	6841	6851	9436	9436					0.08958602511438585
ELVEFRAR	8	Unmodified	_ELVEFRAR_					0	0	0		ENST00000531912.1_1_11:612647-613379:-|nuORF;ENST00000528413.5_1_11:612647-613821:-|nuORF;ENST00000533182.5_1_11:612647-613950:-|nuORF;nc|ENSG00000185507|Q92985-2|IRF7;ENSG00000185507|ENST00000525445|IRF7;nc|ENSG00000185507|Q92985-4|IRF7	ENST00000531912.1_1_11:612647-613379:-|nuORF	ENST00000531912.1_1_11:612647-613379:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.8141784667969	2	510.285266	1018.55598	-1.5017	-0.00076631	-1.6346	-0.00083412	-3.1364	-0.0016004	510.2847497430781	95.505	0.55126	93.037	92.761	93.312	-2.4685					13	10	2	0	0	0	0.028476	1	8406	8406		38.806	0	1	18747			8405	8258	6842	6852	9437	9437					0.047442785373846164
ELVELQEQTK	10	Unmodified	_ELVELQEQTK_					0	0	0			REV__HIP1|p.R940Sfs*47|1|0.08|ENSG00000127946|chr7:75542924-75542925|-/T|frameshift_variant	REV__HIP1|p.R940Sfs*47|1|0.08|ENSG00000127946|chr7:75542924-75542925|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	405.91278076171875	3	406.218837	1215.63468	1.068	0.00043382	-0.10543	-4.2829E-05	0.96252	0.00039099	406.21819889847063	65.35	0.62971	61.865	61.647	62.276	-3.4854					16	12	2	0	0	0	0.026994	1	4724	4724		37.508	3.4217	1	16897	+		8406	18831	6843	6853	9438	9438					0.035490412611579814
ELVEQDIQP	9	Unmodified	_ELVEQDIQP_					0	0	0		nc|ENSG00000196338|Q9NZ94-3|NLGN3;nc|ENSG00000196338|Q9NZ94-2|NLGN3;ENSG00000196338|ENST00000358741|NLGN3	nc|ENSG00000196338|Q9NZ94-3|NLGN3	nc|ENSG00000196338|Q9NZ94-3|NLGN3	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.7285766601562	2	535.771854	1069.52915	1.0749	0.00057591	0.18156	9.7274E-05	1.2565	0.00067319	535.7706693604298	83.327	0.25829	83.327	83.161	83.419	0					6	5	2	0	0	0	0.027441	1	8666	8666		40.778	1.5253	1	90854			8407	8590	6844	6854	9439	9439					-0.002828748644560619
ELVESCFCPF	10	Unmodified	_ELVESCFCPF_					0	0	0			REV__ENST00000304056.8_1_7:32908527-32908587:-|nuORF	REV__ENST00000304056.8_1_7:32908527-32908587:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.7963256835938	2	587.251385	1172.48822	0.48337	0.00028386	-1.4525	-0.00085296	-0.96909	-0.0005691	587.2504878812115	101.48	0.37532	101.48	101.32	101.69	0					13	8	2	0	0	0	0.026822	1	11287	11287		30.504	0	1	242090	+		8408	24274	6845	6855	9440	9440					-0.09112675499955003
ELVGGPRRL	9	Unmodified	_ELVGGPRRL_					0	0	0			REV__ENSG00000197599|ENST00000389176|CCDC154	REV__ENSG00000197599|ENST00000389176|CCDC154	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.9026184082031	2	498.801083	995.587613	0.38126	0.00019018	-0.60644	-0.00030249	-0.22518	-0.00011232	498.80068333323396	69.396	1.0446	66.582	66.312	67.356	-2.8144					43	20	3	0	0	0	0.027441	1	3164	3164		40.778	0	1	50744	+		8409	22938	6846	6856	9441	9441					0.0896427129133599
ELVGLVITEL	10	Unmodified	_ELVGLVITEL_					0	0	0		EIF2B4|p.D498G|1|0.07|ENSG00000115211|chr2:27364479-27364479|T/C|missense_variant	EIF2B4|p.D498G|1|0.07|ENSG00000115211|chr2:27364479-27364479|T/C|missense_variant	EIF2B4|p.D498G|1|0.07|ENSG00000115211|chr2:27364479-27364479|T/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	543.3218994140625	2	543.326265	1084.63798	-2.0755	-0.0011277	-3.8168	-0.0020738	-5.8923	-0.0032014	543.3239929564256	119.25	1.2315	119.08	118.81	120.04	-0.17138					52	24	3	0	0	0	0.5675	1	11461	11461		45.972	5.1941	1	160450			8410	789	6847	6857	9442	9442					0.09904336105796574
ELVIIGIALL	10	Unmodified	_ELVIIGIALL_					0	0	0		ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.3491821289062	2	527.349543	1052.68453	-0.81701	-0.00043085	1.5396	0.0008119	0.72257	0.00038105	527.3501711257758	102.27	2.0913	100.07	99.522	101.61	-2.1994					113	39	4	0	0	0	0.71192	1	9206	9206		29.15	6.1071	1	324850			8411	8469	6848	6858	9443	9443					0.1602982072774921
ELVIKKVTE	9	Unmodified	_ELVIKKVTE_					0	0	0			REV__tr|A0A7D7AEN9|A0A7D7AEN9_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03190PE=4SV=1	REV__tr|A0A7D7AEN9|A0A7D7AEN9_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03190PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.7913818359375	2	529.826432	1057.63831	-1.2741	-0.00067505	2.7565	0.0014605	1.4824	0.00078544	529.8275900118146	63.425	0.62402	59.95	59.674	60.298	-3.475					17	12	2	0	0	0	0.027462	1	4467	4467		29.15	0	1	16004	+		8412	32706	6849	6859	9444	9444					0.11179755825673965
ELVIKLMLE	9	Unmodified	_ELVIKLMLE_					0	0	0		ENSG00000155085|ENST00000424296|AK9;nc|ENSG00000155085|Q5TCS8-3|AK9;nc|ENSG00000155085|Q5TCS8-6|AK9;nc|ENSG00000155085|Q5TCS8-2|AK9;nc|ENSG00000155085|Q5TCS8-1|AK9	ENSG00000155085|ENST00000424296|AK9	ENSG00000155085|ENST00000424296|AK9	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.305908203125	2	544.325211	1086.63587	1.3895	0.00075633	2.6285	0.0014308	4.018	0.0021871	544.3267484192467	109.96	0.76368	109.96	109.46	110.22	0					23	16	2	0	0	0	0.027433	1	12418	12418		51.335	0	1	489920			8413	5767	6850	6860	9445	9445					0.09601584096344595
ELVKLGIKR	9	Unmodified	_ELVKLGIKR_					0	0	0			REV__nc|ENSG00000111731|Q86YS7|C2CD5	REV__nc|ENSG00000111731|Q86YS7|C2CD5	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.2962646484375	2	528.350409	1054.68626	-0.33778	-0.00017847	0.1278	6.7522E-05	-0.20999	-0.00011095	528.3507264469558	71.266	0.52061	71.266	71.068	71.589	0					23	12	3	0	0	0	0.027448	1	6925	6925		53.351	7.3995	1	500420	+		8414	18056	6851	6861	9446	9446					0.1611087453638902
ELVKLKHK	8	Unmodified	_ELVKLKHK_					0	0	0			REV__tr|A0A7D6ZXD8|A0A7D6ZXD8_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22595PE=4SV=1	REV__tr|A0A7D6ZXD8|A0A7D6ZXD8_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22595PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.7884521484375	2	497.824027	993.633501	-1.6688	-0.00083079	1.5108	0.00075214	-0.15799	-7.8649E-05	497.8246929944983	119.62	0.83958	118.27	117.93	118.77	-1.3444					23	15	2	0	0	0	0.028476	1	11212	11212		24.203	9.5387	1	22462	+		8415	32328	6852	6862	9447	9447					0.13642916473577316
ELVKLLAAR	9	Unmodified	_ELVKLLAAR_					0	0	0			REV__ENST00000588278.1_1_19:507506-508034:+|nuORF	REV__ENST00000588278.1_1_19:507506-508034:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3033142089844	2	506.829309	1011.64407	-0.19874	-0.00010073	-2.2442	-0.0011375	-2.443	-0.0012382	506.8286276034114	98.389	0.44994	96.011	95.725	96.175	-2.3786					11	8	2	0	0	0	0.027448	1	8726	8726		44.117	0	1	11597	+		8416	27885	6853	6863	9448	9448					0.13870899127994107
ELVKMLFDD	9	Unmodified	_ELVKMLFDD_					0	0	0			REV__nc|ENSG00000100241|O95248|SBF1	REV__nc|ENSG00000100241|O95248|SBF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.2847900390625	2	555.281	1108.54745	1.2391	0.00068805	-0.41157	-0.00022853	0.82753	0.00045951	555.2809445637128	154.93	1.0096	154.93	154.67	155.68	0					30	19	3	0	0	0	0.027448	1	18135	18135		27.882	0	1	61533	+		8417	17384	6854	6864	9449	9449					-0.002484562141034985
ELVKPENKI	9	Unmodified	_ELVKPENKI_					0	0	0		nc|ENSG00000005189|Q96IC2-2|REXO5;ENSG00000005189|ENST00000261377|REXO5	nc|ENSG00000005189|Q96IC2-2|REXO5	nc|ENSG00000005189|Q96IC2-2|REXO5	MULTI-MSMS	OvCa99_classI_Rep5	1	535.31982421875	2	535.316232	1068.61791	-0.55325	-0.00029617	1.4081	0.00075376	0.85481	0.00045759	535.3168720531264	61.705	0.66537	61.705	61.416	62.081	0					45	15	4	0	0	0	0.34132	1	5472	5472		58.23	1.7961	1	4476700			8418	847	6855	6865	9450	9450					0.08634585165850694
ELVLAWTDL	9	Unmodified	_ELVLAWTDL_					0	0	0			REV__URB2|p.S515A|1|0.13|ENSG00000135763|chr1:229636156-229636156|T/G|missense_variant	REV__URB2|p.S515A|1|0.13|ENSG00000135763|chr1:229636156-229636156|T/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.319091796875	2	530.289682	1058.56481	-0.18339	-9.725E-05	3.6926	0.0019582	3.5092	0.0018609	530.2911240270062	71.525	0.64247	71.525	71.15	71.792	0					21	15	2	0	0	0	0.027279	1	6875	6875		60.972	0	1	242740	+		8419	32749	6856	6866	9451	9451					0.037872073831977104
ELVLGGLWV	9	Unmodified	_ELVLGGLWV_					0	0	0		ENST00000582314.5_1_17:17997264-18003464:+|nuORF	ENST00000582314.5_1_17:17997264-18003464:+|nuORF	ENST00000582314.5_1_17:17997264-18003464:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.305908203125	2	493.289485	984.564418	1.7115	0.00084424	-3.8964	-0.0019221	-2.185	-0.0010778	493.2875516090758	92.059	0.79984	92.059	91.794	92.594	0					25	18	2	0	0	0	0.027462	1	9956	9956		26.796	8.4717	1	778750			8420	14004	6857	6867	9452	9452					0.07151832454007945
ELVLILLTL	9	Unmodified	_ELVLILLTL_					0	0	0		L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|121|2|sense	L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|121|2|sense	L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|121|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.790771484375	2	513.844093	1025.67363	2.0306	0.0010434	-2.7867	-0.0014319	-0.75607	-0.0003885	513.8425390123604	76.579	1.4467	76.579	75.764	77.211	0					74	35	3	0	0	0	0.027462	1	7571	7571		23.042	5.6775	1	1096600			8421	14689	6858	6868	9453	9453					0.16182418353491812
ELVLLKSK	8	Unmodified	_ELVLLKSK_					0	0	0			REV__ENSG00000055130|ENST00000325222|CUL1	REV__ENSG00000055130|ENST00000325222|CUL1	MULTI-SECPEP	OvCa9_classI_Rep2	2	465.79791259765625	2	465.305136	928.595718	-0.44492	-0.00020703	1.1825	0.00055021	0.73754	0.00034318	465.30502771360904	77.49	0.26117	75.701	75.571	75.832	-1.7894					5	4	2	0	0	0	0.028476	1	6433	6433		15.642	0	1	5092.3	+		8422	16708	6859	6869	9454	9454					0.1285640548809397
ELVLMLNEL	9	Unmodified	_ELVLMLNEL_					0	0	0		ADCY4|p.T926Afs*10|1|0.07|ENSG00000129467|chr14:24319388-24319394|CGATGGT/-|frameshift_variant;ENSG00000129467|ENST00000418030|ADCY4;ENST00000554674.1_1_14:24799917-24801775:-|nuORF;ADCY4|p.E454Gfs*3|1|0.3|ENSG00000129467|chr14:24329226-24329227|-/T|frameshift_variant	ADCY4|p.T926Afs*10|1|0.07|ENSG00000129467|chr14:24319388-24319394|CGATGGT/-|frameshift_variant	ADCY4|p.T926Afs*10|1|0.07|ENSG00000129467|chr14:24319388-24319394|CGATGGT/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	537.3060302734375	2	537.299193	1072.58383	2.2686	0.0012189	-1.4439	-0.00077582	0.82467	0.0004431	537.2974545889906	82.583	0.84408	82.583	81.937	82.781	0					33	19	3	0	0	0	0.1804	1	8563	8563		79.713	0.26157	1	1414100			8423	35	6860	6870	9455	9455					0.050444206825886795
ELVLRKGLD	9	Unmodified	_ELVLRKGLD_					0	0	0		nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;ENSG00000243232|ENST00000289269|PCDHAC2;PCDHAC2|p.H770Pfs*34|1|0.02|ENSG00000243232|chr5:140969074-140969075|-/CCCTGCAGGAGAACAGT|frameshift_variant	nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;PCDHAC2|p.H770Pfs*34|1|0.02|ENSG00000243232|chr5:140969074-140969075|-/CCCTGCAGGAGAACAGT|frameshift_variant	nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.3362426757812	2	521.816399	1041.61824	0.6477	0.00033798	1.0062	0.00052503	1.6539	0.00086301	521.8167052992559	109.66	0.48787	109.66	109.37	109.86	0					14	10	2	0	0	0	0.027441	1	12404	12404		40.778	0	1	122750			8424	9373;15478	6861	6871	9456	9456					0.09910004885705348
ELVLRLTSI	9	Unmodified	_ELVLRLTSI_					0	0	0		tr|A0A7D6VPL8|A0A7D6VPL8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_23525PE=4SV=1	tr|A0A7D6VPL8|A0A7D6VPL8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_23525PE=4SV=1	tr|A0A7D6VPL8|A0A7D6VPL8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_23525PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.30029296875	2	522.326599	1042.63865	1.8329	0.0009574	-1.9588	-0.0010231	-0.12587	-6.5745E-05	522.3255191421387	136.84	1.0722	135.3	134.99	136.06	-1.5437					41	21	3	0	0	0	0.027448	1	13297	13297		35.618	0	1	24169			8425	34780	6862	6872	9457	9457					0.11903175545512568
ELVLTGSNF	9	Unmodified	_ELVLTGSNF_					0	0	0		ENST00000557028.5_1_14:24843440-24843749:+|nuORF;nc|ENSG00000100968|Q14934-21|NFATC4;nc|ENSG00000100968|Q14934-3|NFATC4;nc|ENSG00000100968|Q14934-4|NFATC4;nc|ENSG00000100968|Q14934-5|NFATC4;nc|ENSG00000100968|Q14934-6|NFATC4;nc|ENSG00000100968|Q14934-7|NFATC4;ENSG00000100968|ENST00000250373|NFATC4;nc|ENSG00000100968|Q14934-8|NFATC4;nc|ENSG00000100968|Q14934-9|NFATC4;nc|ENSG00000100968|Q14934-10|NFATC4;nc|ENSG00000100968|Q14934-11|NFATC4;nc|ENSG00000100968|Q14934-12|NFATC4;nc|ENSG00000100968|Q14934-13|NFATC4;nc|ENSG00000100968|Q14934-14|NFATC4;nc|ENSG00000100968|Q14934-15|NFATC4;nc|ENSG00000100968|Q14934-16|NFATC4;nc|ENSG00000100968|Q14934-17|NFATC4;nc|ENSG00000100968|Q14934-18|NFATC4;nc|ENSG00000100968|Q14934-19|NFATC4;nc|ENSG00000100968|Q14934-20|NFATC4;nc|ENSG00000100968|Q14934-2|NFATC4	ENST00000557028.5_1_14:24843440-24843749:+|nuORF	ENST00000557028.5_1_14:24843440-24843749:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	490.2587890625	2	490.258382	978.502212	0.63895	0.00031325	0.53283	0.00026123	1.1718	0.00057448	490.2586148681232	140.06	0.70317	140.06	139.74	140.44	0					33	14	4	0	0	0	0.61208	1	16354	16354		30.504	1.3541	1	110240			8426	2126	6863	6873	9458	9458					0.012100613150096251
ELVLWIRE	8	Unmodified	_ELVLWIRE_					0	0	0		ENST00000251343.9_1_14:24906506-24906650:+|nuORF	ENST00000251343.9_1_14:24906506-24906650:+|nuORF	ENST00000251343.9_1_14:24906506-24906650:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8189086914062	2	529.305667	1056.59678	-0.48157	-0.0002549	-3.6881	-0.0019521	-4.1697	-0.002207	529.3036449446049	48.563	0.52327	48.563	48.372	48.895	0					19	11	2	0	0	0	0.028476	1	3606	3606		45.952	0	1	574810			8427	9797	6864	6874	9459	9459					0.0707461985698501
ELVMPEEMV	9	Unmodified	_ELVMPEEMV_					0	0	0		ENSG00000282815|ENST00000695840|TEX13C	ENSG00000282815|ENST00000695840|TEX13C	ENSG00000282815|ENST00000695840|TEX13C	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.7750244140625	2	538.753761	1075.49297	2.4414	0.0013153	1.9437	0.0010472	4.3851	0.0023625	538.754924589589	76.057	0.11963	76.057	75.956	76.076	0					4	2	2	0	0	0	0.027462	1	7606	7606		17.365	0	1	184640			8428	9607	6865	6875	9460	9460					-0.041757913571700556
ELVMVHQSI	9	Unmodified	_ELVMVHQSI_					0	0	0			REV__tr|A0A553SMS2|A0A553SMS2_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_23110PE=3SV=1	REV__tr|A0A553SMS2|A0A553SMS2_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_23110PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.8220825195312	2	528.281334	1054.54812	-1.1454	-0.00060511	0.70608	0.00037301	-0.43935	-0.0002321	528.2816889084332	74.511	1.8195	71.28	70.192	72.012	-3.2308					61	37	2	0	0	0	0.027462	1	5852	5852		21.96	0	1	88335	+		8429	30365	6866	6876	9461	9461					0.023023832256058085
ELVNFFKEF	9	Unmodified	_ELVNFFKEF_					0	0	0		nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.3416137695312	2	586.802957	1171.59136	2.5791	0.0015134	-4.1563	-0.0024389	-1.5771	-0.00092547	586.7997287548588	97.218	0.3891	97.218	97.008	97.397	0					11	8	2	0	0	0	0.027426	1	10664	10664		66.429	22.052	1	124430			8430	9566	6867	6877	9462	9462					0.012428962745161698
ELVPEPRTP	9	Unmodified	_ELVPEPRTP_					0	0	0		sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1;sp|P08546|DPOL_HCMVADNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL54PE=1SV=2	sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1	sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	519.2897338867188	2	519.284931	1036.55531	1.3429	0.00069733	4.1723	0.0021666	5.5152	0.0028639	519.2869973535737	125.91	0.70274	125.91	125.67	126.37	0					23	14	2	0	0	0	0.40667	1	14560	14560		51.335	10.557	1	160510			8431	32884	6868	6878	9463	9463					0.03849439097666618
ELVPRLFR	8	Unmodified	_ELVPRLFR_					0	0	0		PCDHA7|p.A363Vfs*11|1|0.1|ENSG00000204963|chr5:140835470-140835471|-/T|frameshift_variant;nc|ENSG00000204963|Q9UN72-2|PCDHA7;ENSG00000204963|ENST00000525929|PCDHA7;PCDHA4|p.E422Gfs*17|1|0.51|ENSG00000204967|chr5:140808451-140808452|-/GACCACACTCAATCAATCACTGGTACAATGTGTACCAC|frameshift_variant;nc|ENSG00000204967|Q9UN74-2|PCDHA4;ENSG00000204967|ENST00000530339|PCDHA4;nc|ENSG00000255408|Q9Y5H8-2|PCDHA3;ENSG00000255408|ENST00000522353|PCDHA3	PCDHA7|p.A363Vfs*11|1|0.1|ENSG00000204963|chr5:140835470-140835471|-/T|frameshift_variant;nc|ENSG00000255408|Q9Y5H8-2|PCDHA3	PCDHA7|p.A363Vfs*11|1|0.1|ENSG00000204963|chr5:140835470-140835471|-/T|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.31494140625	2	515.313826	1028.6131	0.32295	0.00016642	3.291	0.0016959	3.614	0.0018623	515.3161877540966	161.29	0.30313	161.29	161.01	161.31	0					8	5	2	0	0	0	0.028476	1	18912	18912		17.365	0	1	22550			8432	9042;9456	6869	6879	9464	9464					0.09993745813767418
ELVRHIIV	8	Unmodified	_ELVRHIIV_					0	0	0			REV__nc|ENSG00000162782|Q8NAT2|TDRD5	REV__nc|ENSG00000162782|Q8NAT2|TDRD5	MULTI-SECPEP	OvCa9_classI_Rep3	3	490.77484130859375	2	489.808377	977.6022	-1.1128	-0.00054507	0.96276	0.00047157	-0.15006	-7.3502E-05	489.8087207652881	90.996	0.86169	88.935	88.483	89.345	-2.0612					29	16	2	0	0	0	0.028476	1	5708	5708		44.531	5.7249	1	36626	+		8433	20779	6870	6880	9465	9465					0.11250343439485277
ELVRLFNVY	9	Unmodified	_ELVRLFNVY_					0	0	0		ENST00000587974.1_1_18:43487913-43547205:-|nuORF;EPG5-RAB38|2|fusion;EPG5-RAB38|1|fusion;nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5;ENST00000585906.5_1_18:43437816-43497657:-|nuORF	ENST00000587974.1_1_18:43487913-43547205:-|nuORF	ENST00000587974.1_1_18:43487913-43547205:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	576.823974609375	2	576.824224	1151.63389	-0.52424	-0.00030239	0.26672	0.00015385	-0.25751	-0.00014854	576.8242472347526	108.47	1.8314	108.25	107.88	109.71	-0.22498					88	36	4	0	0	0	0.59259	1	10165	10165		32.812	4.9302	1	255670			8434	5613	6871	6881	9466	9466					0.06414291402757044
ELVSNINNI	9	Unmodified	_ELVSNINNI_					0	0	0			REV__ENSG00000169189|ENST00000361439|NSMCE1	REV__ENSG00000169189|ENST00000361439|NSMCE1	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.2590637207031	2	508.274564	1014.53457	2.1671	0.0011015	2.6301	0.0013368	4.7972	0.0024383	508.2763941161331	78.345	0.78412	78.345	77.884	78.668	0					26	18	2	0	0	0	0.027304	1	7892	7892		58.23	10.314	1	859670	+		8435	21442	6872	6882	9467	9467					0.027888487180121047
ELVSNINNI	9	Unmodified	_ELVSNINNI_					0	0	0			REV__ENSG00000169189|ENST00000361439|NSMCE1	REV__ENSG00000169189|ENST00000361439|NSMCE1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	508.274564	1014.53457	0.074695	3.7965E-05	-0.61731	-0.00031376	-0.54262	-0.0002758	508.27432118779706	79.736	1.3782	78.041	77.19	78.568	-1.6951	-0.152	-0.00014147	NaN	58.23	62	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108270	+		8436	21442	6872	6882							0.027888487180121047
ELVTGRRREGI	11	Unmodified	_ELVTGRRREGI_					0	0	0		tr|A0A553SLT6|A0A553SLT6_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_21270PE=3SV=1	tr|A0A553SLT6|A0A553SLT6_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_21270PE=3SV=1	tr|A0A553SLT6|A0A553SLT6_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_21270PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	643.3728637695312	2	643.370392	1284.72623	1.8139	0.001167	2.31	0.0014862	4.1238	0.0026531	643.3713755642221	109.02	0.39328	109.02	108.8	109.19	0					15	8	3	0	0	0	0.025341	1	12337	12337		20.837	0	1	360860			8437	33761	6873	6883	9468	9468					0.09525769468996259
ELVTLYRR	8	Unmodified	_ELVTLYRR_					0	0	0		ENSG00000241839|ENST00000323544|PLEKHO2;nc|ENSG00000241839|Q8TD55-2|PLEKHO2	ENSG00000241839|ENST00000323544|PLEKHO2	ENSG00000241839|ENST00000323544|PLEKHO2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.7960815429688	2	525.308741	1048.60293	-1.2135	-0.00063746	1.6783	0.00088161	0.46479	0.00024416	525.3094636350502	109.14	0.76482	107.42	107.13	107.89	-1.7256					23	14	2	0	0	0	0.028476	1	9988	9988		34.173	6.2903	1	36088			8438	9356	6874	6884	9469	9469					0.08057138088520333
ELVVLSVSVL	10	Unmodified	_ELVVLSVSVL_					0	0	0			REV__ENST00000474772.1_1_9:314391-314454:+|nuORF	REV__ENST00000474772.1_1_9:314391-314454:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.3408203125	2	529.328808	1056.64306	0.90041	0.00047661	2.4932	0.0013197	3.3936	0.0017963	529.3302324637618	139.52	0.65439	139.52	139.22	139.88	0					35	13	4	0	0	0	0.026553	1	16321	16321		56.721	21.103	1	271700	+		8439	26347	6875	6885	9470	9470					0.11700639968444193
ELVVSLALQ	9	Unmodified	_ELVVSLALQ_					0	0	0		ENST00000278935.7_2_11:117283083-117283290:+|nuORF	ENST00000278935.7_2_11:117283083-117283290:+|nuORF	ENST00000278935.7_2_11:117283083-117283290:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.29132080078125	2	486.292225	970.569897	-0.98432	-0.00047866	0.98699	0.00047996	0.0026715	1.2991E-06	486.2925923693071	106.74	1.7572	104.86	103.83	105.59	-1.8785					56	33	3	0	0	0	0.28934	1	9730	9730		64.207	5.9773	1	149940			8440	10036	6876	6886	9471	9471					0.08343511245811897
ELVWAGLPLV	10	Unmodified	_ELVWAGLPLV_					0	0	0			REV__ENST00000540869.5_1_11:68500318-68517720:-|nuORF	REV__ENST00000540869.5_1_11:68500318-68517720:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.2867431640625	2	548.823692	1095.63283	2.541	0.0013946	-1.6594	-0.00091074	0.88157	0.00048383	548.8227828357835	116.14	0.45845	116.14	115.82	116.28	0					14	9	2	0	0	0	0.026982	1	13271	13271		23.042	2.0956	1	86804	+		8441	19103	6877	6887	9472	9472					0.0888407703384928
ELWAMPQEL	9	Oxidation (M)	_ELWAM(Oxidation (M))PQEL_		ELWAM(1)PQEL		ELWAM(110)PQEL	0	0	1			REV__ENST00000254770.2_1_7:55468873-55469005:+|nuORF	REV__ENST00000254770.2_1_7:55468873-55469005:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.7996826171875	2	566.7708	1131.52705	2.0369	0.0011545	3.1559	0.0017887	5.1928	0.0029431	566.771956485765	78.738	0.41441	78.738	78.54	78.955	0					14	9	2	0	0	0	0.027137	1	8005	8005		110.12	14.305	1	227320	+		8442	23880	6878	6888	9473	9473		553			-0.0334562687394282
ELWGIRKP	8	Unmodified	_ELWGIRKP_					0	0	0			REV__tr|A0A553SIA9|A0A553SIA9_NIACIResponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_14510PE=4SV=1	REV__tr|A0A553SIA9|A0A553SIA9_NIACIResponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_14510PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.80047607421875	2	499.792727	997.5709	-0.9435	-0.00047156	-3.0879	-0.0015433	-4.0314	-0.0020149	499.7911554346056	52.784	1.3095	49.576	49.094	50.404	-3.208					47	25	3	0	0	0	0.028476	1	3147	3147		47.916	7.1374	1	37384	+		8443	29878	6879	6889	9474	9474					0.07201770405367824
ELWKIILP	8	Unmodified	_ELWKIILP_					0	0	0			REV__ENSG00000029639|ENST00000367166|TFB1M	REV__ENSG00000029639|ENST00000367166|TFB1M	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.3030700683594	2	506.315503	1010.61645	-0.075955	-3.8457E-05	-4.0255	-0.0020382	-4.1014	-0.0020766	506.31333111436953	96.707	0.88435	95.748	95.481	96.365	-0.95856					41	17	3	0	0	0	0.028476	1	8760	8760		30.504	0	1	187360	+		8444	16582	6880	6890	9475	9475					0.11156995867759179
ELWKIILP	8	Unmodified	_ELWKIILP_					0	0	0			REV__ENSG00000029639|ENST00000367166|TFB1M	REV__ENSG00000029639|ENST00000367166|TFB1M	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3033142089844	2	506.315503	1010.61645	-0.10546	-5.3396E-05	-3.9895	-0.0020199	-4.0949	-0.0020733	506.31357840284227	98.177	0.96135	95.798	95.573	96.534	-2.3786					35	18	3	0	0	0	0.028476	1	8726	8726		51.335	3.4199	1	234650	+		8445	16582	6880	6890	9476	9476					0.11156995867759179
ELWLGQNEF	9	Unmodified	_ELWLGQNEF_					0	0	0		ENSG00000125931|ENST00000651998|CITED1;nc|ENSG00000164442|Q99967-2|CITED2;nc|ENSG00000125931|Q99966-2|CITED1;ENSG00000164442|ENST00000367651|CITED2	ENSG00000125931|ENST00000651998|CITED1	ENSG00000125931|ENST00000651998|CITED1	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.8391723632812	2	568.274564	1134.53457	1.4863	0.00084465	-2.0003	-0.0011367	-0.51392	-0.00029205	568.2734267684671	119.14	0.51717	119.14	118.86	119.38	0					21	10	3	0	0	0	0.027462	1	13650	13650		18.262	0	1	86365			8446	3755	6881	6891	9477	9477					-0.027311512819778727
ELWNKGALS	9	Unmodified	_ELWNKGALS_					0	0	0		UBOX5|p.A400Lfs*4|1|0.05|ENSG00000185019|chr20:3121441-3121441|C/-|frameshift_variant;nc|ENSG00000185019|O94941-2|UBOX5;ENSG00000185019|ENST00000217173|UBOX5	UBOX5|p.A400Lfs*4|1|0.05|ENSG00000185019|chr20:3121441-3121441|C/-|frameshift_variant	UBOX5|p.A400Lfs*4|1|0.05|ENSG00000185019|chr20:3121441-3121441|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.2794494628906	2	509.271824	1016.5291	-1.0757	-0.0005478	1.0872	0.00055369	0.011568	5.8915E-06	509.2732891771483	76.934	0.26199	74.563	74.453	74.715	-2.3715					7	4	2	0	0	0	0.027462	1	3998	3998		26.693	0	1	8700.1			8447	8214	6882	6892	9478	9478					0.021491699262014663
ELWPLELD	8	Unmodified	_ELWPLELD_					0	0	0			REV__ENSG00000184502|ENST00000329402|GAST	REV__ENSG00000184502|ENST00000329402|GAST	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.81097412109375	2	507.760758	1013.50696	-1.1559	-0.00058692	4.1289	0.0020965	2.973	0.0015096	507.76278550414963	100.61	1.1599	99.002	98.706	99.866	-1.6053					49	22	3	0	0	0	0.028476	1	6814	6814		45.952	0	1	200720	+		8448	22435	6883	6893	9479	9479					0.0007494545775443839
ELWQVQPE	8	Unmodified	_ELWQVQPE_					0	0	0			REV__ENSG00000140564|ENST00000268171|FURIN	REV__ENSG00000140564|ENST00000268171|FURIN	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.7974243164062	2	514.756007	1027.49746	-0.85192	-0.00043853	-1.3895	-0.00071528	-2.2415	-0.0011538	514.7555424954846	53.541	0.30318	53.541	53.347	53.651	0					9	6	2	0	0	0	0.028476	1	4264	4264		20.947	0	1	119610	+		8449	19687	6884	6894	9480	9480					-0.01518822827756594
ELWSIKLP	8	Unmodified	_ELWSIKLP_					0	0	0			REV__ENST00000559238.5_1_15:41060140-41072106:-|nuORF	REV__ENST00000559238.5_1_15:41060140-41072106:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	494.2876281738281	2	493.289485	984.564418	-1.2631	-0.00062307	0.50417	0.0002487	-0.75893	-0.00037437	493.28988315092164	83.748	0.85958	81.487	81.302	82.162	-2.261					25	18	2	0	0	0	0.028476	1	4865	4865		108.09	28.636	1	178140	+		8450	17645	6885	6895	9481	9481					0.07151832453996576
ELWSVGAPL	9	Unmodified	_ELWSVGAPL_					0	0	0			REV__ENSG00000283434|ENST00000637986|CSNKA2IP	REV__ENSG00000283434|ENST00000637986|CSNKA2IP	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.2935485839844	2	486.263468	970.512382	1.8625	0.00090566	3.4497	0.0016775	5.3122	0.0025831	486.26528374650763	134.32	0.23497	134.32	134.1	134.34	0					5	4	2	0	0	0	0.027462	1	15632	15632		33.516	16.151	1	42433	+		8451	23663	6886	6896	9482	9482					0.025946690402406603
ELWTSNIV	8	Unmodified	_ELWTSNIV_					0	0	0			REV__ENST00000563810.1_1_8:41685974-41686286:-|nuORF	REV__ENST00000563810.1_1_8:41685974-41686286:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	481.2513732910156	2	481.2531	960.491647	-0.09307	-4.479E-05	-4.3759	-0.0021059	-4.469	-0.0021507	481.25091264103446	43.035	0.89791	43.035	42.796	43.694	0					50	20	4	0	0	0	0.66057	1	2828	2828		51.335	5.3835	1	3269500	+		8452	27661	6887	6897	9483	9483					0.009820786605587273
ELWWVPRRPR	10	Unmodified	_ELWWVPRRPR_					0	0	0			REV__chr8:144790470-144791337|150|1918.47|0.48|11.96|-|0|RPL8,None|1	REV__chr8:144790470-144791337|150|1918.47|0.48|11.96|-|0|RPL8,None|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.2760314941406	3	465.598317	1393.77312	0.41329	0.00019243	4.3309	0.0020164	4.7442	0.0022089	465.5997062552978	63.572	0.19257	63.572	63.455	63.648	0					5	4	2	0	0	0	0.027349	1	5731	5731		15.333	0	1	50940	+		8453	16114	6888	6898	9484	9484					0.09198673810760738
ELYGKYKCKI	10	Unmodified	_ELYGKYKCKI_					0	0	0		tr|A0A7D6VS54|A0A7D6VS54_9CLOTFormate--tetrahydrofolateligaseOS=ClostridiumintestinaleOX=36845GN=fhsPE=3SV=1	tr|A0A7D6VS54|A0A7D6VS54_9CLOTFormate--tetrahydrofolateligaseOS=ClostridiumintestinaleOX=36845GN=fhsPE=3SV=1	tr|A0A7D6VS54|A0A7D6VS54_9CLOTFormate--tetrahydrofolateligaseOS=ClostridiumintestinaleOX=36845GN=fhsPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	415.5633544921875	3	415.56177	1243.66348	0.38845	0.00016142	2.5732	0.0010693	2.9616	0.0012307	415.56285625143386	33.409	0.97916	33.409	32.989	33.969	0					62	19	6	0	0	0	0.55109	1	1529	1529		47.96	5.0953	1	833880			8454	34989	6889	6899	9485	9485					0.05139487356586869
ELYHNLKDL	9	Unmodified	_ELYHNLKDL_					0	0	0			REV__EXOC8|p.G422Efs*18|1|0.24|ENSG00000116903|chr1:231336481-231336482|-/TCAAAGTTACTTACCCCACAACTTTTCATCT|frameshift_variant	REV__EXOC8|p.G422Efs*18|1|0.24|ENSG00000116903|chr1:231336481-231336482|-/TCAAAGTTACTTACCCCACAACTTTTCATCT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.7698364257812	2	572.803488	1143.59242	1.6336	0.00093574	-1.2633	-0.00072365	0.37027	0.00021209	572.8026807872468	118.53	1.3608	118.53	118.06	119.43	0					38	28	2	0	0	0	0.027462	1	13551	13551		34.173	0	1	137620	+		8455	18325	6890	6900	9486	9486					0.026371106434453395
ELYKQIGIDP	10	Unmodified	_ELYKQIGIDP_					0	0	0		ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.8011474609375	2	588.318971	1174.62339	1.1492	0.0006761	-0.66999	-0.00039417	0.47921	0.00028193	588.3184878128766	144.88	0.24336	144.88	144.69	144.94	0					6	4	2	0	0	0	0.026734	1	16945	16945		12.812	0	1	12496			8456	980	6891	6901	9487	9487					0.04306263957664669
ELYLSLERSL	10	Unmodified	_ELYLSLERSL_					0	0	0			REV__nc|ENSG00000158201|Q8WU67-2|ABHD3	REV__nc|ENSG00000158201|Q8WU67-2|ABHD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	409.2254638671875	3	408.227444	1221.6605	1.3826	0.00056441	-0.74109	-0.00030253	0.6415	0.00026188	408.22701844788196	58.133	0.50421	58.133	57.899	58.403	0					20	11	2	0	0	0	0.026949	1	4909	4909		42.338	18.106	1	945540	+		8457	20557	6892	6902	9488	9488					0.058539355034326945
ELYLTIIKV	9	Unmodified	_ELYLTIIKV_					0	0	0		ENST00000338728.9_1_6:117869873-117869945:+|nuORF	ENST00000338728.9_1_6:117869873-117869945:+|nuORF	ENST00000338728.9_1_6:117869873-117869945:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.7547607421875	2	546.339175	1090.6638	0.053506	2.9233E-05	-3.9776	-0.0021731	-3.9241	-0.0021439	546.3379148750256	64.691	0.162	64.691	64.588	64.75	0					5	3	2	0	0	0	0.027462	1	5896	5896		14.865	3.3539	1	170250			8458	10540	6893	6903	9489	9489					0.12209230348094025
ELYPSWSVE	9	Unmodified	_ELYPSWSVE_					0	0	0		ENSG00000101574|ENST00000574538|METTL4;ENST00000573134.1_1_18:2539001-2552773:-|nuORF	ENSG00000101574|ENST00000574538|METTL4	ENSG00000101574|ENST00000574538|METTL4	MULTI-SECPEP	OvCa9_classI_Rep3	3	555.3253173828125	2	555.261122	1108.50769	-1.5091	-0.00083794	-1.8439	-0.0010238	-3.353	-0.0018618	555.2603331102778	85.055	0.79018	82.835	82.696	83.486	-2.2204					27	15	2	0	0	0	0.027462	1	5000	5000		37.159	0	1	29538			8459	2187	6894	6904	9490	9490					-0.04222259893185765
ELYRGLWKP	9	Unmodified	_ELYRGLWKP_					0	0	0			REV__ENSG00000236543|ENST00000430816|unknown	REV__ENSG00000236543|ENST00000430816|unknown	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.8102416992188	2	581.324391	1160.63423	-0.6406	-0.0003724	-3.5999	-0.0020927	-4.2405	-0.0024651	581.3223860890506	60.204	0.69123	60.204	59.997	60.688	0					24	16	2	0	0	0	0.027462	1	5263	5263		14.865	0.72775	1	450780	+		8460	23412	6895	6905	9491	9491					0.06033711122586283
ELYSMSFII	9	Unmodified	_ELYSMSFII_					0	0	0			REV__ENST00000489684.2_1_3:49044864-49050780:+|nuORF	REV__ENST00000489684.2_1_3:49044864-49050780:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.7698974609375	2	551.778093	1101.54163	1.9245	0.0010619	4.2206	0.0023288	6.1451	0.0033907	551.7800658990377	76.597	0.31304	76.597	76.365	76.678	0					11	7	2	0	0	0	0.027462	1	7685	7685		29.15	0	1	191500	+		8461	22053	6896	6906	9492	9492					-0.005075547257774815
ELYTKERH	8	Unmodified	_ELYTKERH_					0	0	0		nc|ENSG00000125864|Q12934-3|BFSP1;nc|ENSG00000125864|Q12934-2|BFSP1;ENSG00000125864|ENST00000377873|BFSP1	nc|ENSG00000125864|Q12934-3|BFSP1	nc|ENSG00000125864|Q12934-3|BFSP1	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.8272705078125	2	538.28018	1074.54581	-0.44331	-0.00023862	-1.8893	-0.001017	-2.3326	-0.0012556	538.7813481599225	93.042	0.29633	91.08	90.932	91.228	-1.9617					6	5	2	0	0	0	0.028476	1	5944	5944		37.159	5.6293	1	20252			8462	3747	6897	6907	9493	9493					0.01151670812168959
EMAGLNNKTI	10	Oxidation (M)	_EM(Oxidation (M))AGLNNKTI_		EM(1)AGLNNKTI		EM(110)AGLNNKTI	0	0	1		nc|ENSG00000133131|Q8TE76-2|MORC4;nc|ENSG00000133131|Q8TE76-3|MORC4;ENSG00000133131|ENST00000355610|MORC4	nc|ENSG00000133131|Q8TE76-2|MORC4	nc|ENSG00000133131|Q8TE76-2|MORC4	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.835693359375	2	553.779156	1105.54376	2.3987	0.0013284	1.4675	0.00081265	3.8662	0.002141	554.2818521476713	74.99	0.40999	74.99	74.841	75.251	0					14	9	2	0	0	0	0.027575	1	7451	7451		112.41	24.714	1	286090			8463	4207	6898	6908	9494	9494		134			-0.004791259879766585
EMAIRQAVN	9	Unmodified	_EMAIRQAVN_					0	0	0			REV__tr|A0A7D7A304|A0A7D7A304_9CLOTUridylatekinaseOS=ClostridiumintestinaleOX=36845GN=pyrHPE=3SV=1	REV__tr|A0A7D7A304|A0A7D7A304_9CLOTUridylatekinaseOS=ClostridiumintestinaleOX=36845GN=pyrHPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.2695922851562	2	516.268758	1030.52296	1.945	0.0010042	-1.1473	-0.00059233	0.7977	0.00041183	516.267939623326	86.898	1.327	86.898	86.594	87.921	0					69	31	4	0	0	0	0.51865	1	9172	9172		40.778	0	1	2874400	+		8464	32562	6899	6909	9495	9495					0.008923284230149875
EMCLLTVRR	9	Unmodified	_EMCLLTVRR_					0	0	0		ENSG00000136235|ENST00000258733|GPNMB;nc|ENSG00000136235|Q14956|GPNMB	ENSG00000136235|ENST00000258733|GPNMB	ENSG00000136235|ENST00000258733|GPNMB	MULTI-MSMS	OvCa9_classI_Rep3	3	561.8047485351562	2	560.801911	1119.58927	-1.2069	-0.00067685	-4.275	-0.0023974	-5.4819	-0.0030743	560.7983679354917	101.63	2.41	100.07	99.592	102	-1.5638					151	45	7	0	0	0	0.21395	1	6934	6934		73.975	2.0973	1	2421700			8465	4473	6900	6910	9496	9496					0.0342582099340234
EMDDPIPII	9	Unmodified	_EMDDPIPII_					0	0	0			REV__ENST00000468576.1_1_3:62229532-62248574:+|nuORF	REV__ENST00000468576.1_1_3:62229532-62248574:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.2975463867188	2	521.759901	1041.50525	1.6427	0.00085712	-2.6944	-0.0014058	-1.0517	-0.00054873	521.7584166922721	137.49	0.51747	137.49	137.3	137.82	0					20	10	3	0	0	0	0.027417	1	16061	16061		65.803	0	1	72732	+		8466	19929	6901	6911	9497	9497					-0.01384431622500415
EMDLAYSIV	9	Unmodified	_EMDLAYSIV_					0	0	0		tr|A0A7D7A3L8|A0A7D7A3L8_9CLOTIsoleucine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=ileSPE=3SV=1	tr|A0A7D7A3L8|A0A7D7A3L8_9CLOTIsoleucine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=ileSPE=3SV=1	tr|A0A7D7A3L8|A0A7D7A3L8_9CLOTIsoleucine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=ileSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.767333984375	2	520.752075	1039.4896	-0.76051	-0.00039604	-2.6768	-0.0013939	-3.4373	-0.00179	521.2535248118717	76.837	0.83874	74.465	74.033	74.871	-2.3715					30	15	3	0	0	0	0.02721	1	3935	3935		73.975	10.668	1	12628			8467	36119	6902	6912	9498	9498					-0.028567181395601438
EMDNVVVC	8	Unmodified	_EMDNVVVC_					0	0	0			REV__ENSG00000092929|ENST00000207549|UNC13D	REV__ENSG00000092929|ENST00000207549|UNC13D	MULTI-MSMS	OvCa99_classI_Rep5	1	454.69512939453125	2	454.696246	907.377939	1.5727	0.00071512	-3.2228	-0.0014654	-1.6501	-0.00075028	454.69465985565694	123.2	0.87817	123.2	122.95	123.83	0					37	18	3	0	0	0	0.60486	1	14203	14203		62.978	2.0065	1	363690	+		8468	17271	6903	6913	9499	9499					-0.07945475768337928
EMDQSKRMI	9	Unmodified	_EMDQSKRMI_					0	0	0		tr|A0A553SQ76|A0A553SQ76_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_20455PE=4SV=1	tr|A0A553SQ76|A0A553SQ76_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_20455PE=4SV=1	tr|A0A553SQ76|A0A553SQ76_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_20455PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	569.276123046875	2	569.273183	1136.53181	-0.082313	-4.6859E-05	2.1754	0.0012384	2.0931	0.0011915	569.2748256174631	56.532	2.7182	56.532	56.094	58.812	0					176	64	6	0	0	0	0.21231	1	4678	4678		74.255	5.4682	1	63821000			8469	34129	6904	6914	9500	9500					-0.030990660028010097
EMDTIERRLD	10	Unmodified	_EMDTIERRLD_					0	0	0		ENSG00000100139|ENST00000215957|MICALL1	ENSG00000100139|ENST00000215957|MICALL1	ENSG00000100139|ENST00000215957|MICALL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	638.3773803710938	2	639.311351	1276.60815	1.0846	0.00069337	-1.9486	-0.0012458	-0.86406	-0.0005524	639.3101616811848	132.33	0.46935	132.33	132.04	132.51	0					14	9	2	0	0	0	0.027088	1	15386	15386		9.1829	3.9628	1	72170			8470	2014	6905	6915	9501	9501					-0.01908970901831708
EMDVQLPPE	9	Unmodified	_EMDVQLPPE_					0	0	0			REV__nc|ENSG00000110200|P60006-2|ANAPC15	REV__nc|ENSG00000110200|P60006-2|ANAPC15	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.3046264648438	2	529.247157	1056.47976	-1.2185	-0.00064491	3.6739	0.0019444	2.4554	0.0012995	529.2488430285387	104.1	0.99127	103.52	103.18	104.17	-0.57639					27	19	2	0	0	0	0.027185	1	9600	9600		71.877	0	1	21814	+		8471	28793	6906	6916	9502	9502					-0.046219061449164656
EMDWSDKVE	9	Unmodified	_EMDWSDKVE_					0	0	0		ENST00000559466.1_1_21:9908333-9912191:-|nuORF	ENST00000559466.1_1_21:9908333-9912191:-|nuORF	ENST00000559466.1_1_21:9908333-9912191:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.858154296875	2	569.739696	1137.46484	1.016	0.00057887	-1.7892	-0.0010194	-0.77317	-0.00044051	569.7383462349276	131.64	0.41753	131.64	131.43	131.85	0					12	8	2	0	0	0	0.027462	1	15291	15291		39.253	3.6345	1	52481			8472	13717	6907	6917	9503	9503					-0.09839398012923084
EMEKNVRLL	9	Unmodified	_EMEKNVRLL_					0	0	0		ENSG00000125170|ENST00000340099|DOK4;DOK4|p.W271Cfs*39|1|0.07|ENSG00000125170|chr16:57473662-57473662|C/-|frameshift_variant	ENSG00000125170|ENST00000340099|DOK4	ENSG00000125170|ENST00000340099|DOK4	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.3135986328125	2	566.313166	1130.61178	1.1399	0.00064555	-1.0539	-0.00059685	0.085989	4.8697E-05	566.3125295267077	60.336	1.3875	56.906	56.65	58.038	-3.43					81	27	4	0	0	0	0.27001	1	4076	4076		66.429	4.3219	1	1427600			8473	759	6908	6918	9504	9504					0.05169743662690962
EMEKRLDE	8	Unmodified	_EMEKRLDE_					0	0	0			REV__ENSG00000169895|ENST00000380155|SYAP1	REV__ENSG00000169895|ENST00000380155|SYAP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2847290039062	2	525.250231	1048.48591	-1.0148	-0.00053304	-4.3193	-0.0022687	-5.3341	-0.0028017	525.7495619955561	70.273	1.3235	70.273	69.591	70.915	0					66	32	3	0	0	0	0.028476	1	6686	6686		49.442	0	1	339290	+		8474	21493	6909	6919	9505	9505					-0.036393879133811424
EMEKRLKT	8	Unmodified	_EMEKRLKT_					0	0	0		ENSG00000006459|ENST00000397560|KDM7A;nc|ENSG00000006459|Q6ZMT4-2|KDM7A	ENSG00000006459|ENST00000397560|KDM7A	ENSG00000006459|ENST00000397560|KDM7A	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.2621459960938	2	517.786784	1033.55902	-0.62757	-0.00032495	-0.19804	-0.00010254	-0.82561	-0.00042749	517.786579125667	56.156	0.69089	56.156	55.932	56.623	0					28	16	2	0	0	0	0.028476	1	4681	4681		15.642	0	1	1437300			8475	878	6910	6920	9506	9506					0.04357785599881936
EMELERGLIF	10	Unmodified	_EMELERGLIF_					0	0	0		tr|A0A553SL23|A0A553SL23_NIACISegregationandcondensationproteinAOS=NialliacirculansOX=1397GN=scpAPE=3SV=1	tr|A0A553SL23|A0A553SL23_NIACISegregationandcondensationproteinAOS=NialliacirculansOX=1397GN=scpAPE=3SV=1	tr|A0A553SL23|A0A553SL23_NIACISegregationandcondensationproteinAOS=NialliacirculansOX=1397GN=scpAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.91162109375	3	412.88128	1235.62201	0.49466	0.00020423	2.1357	0.0008818	2.6304	0.001086	413.2158017248084	48.042	0.30474	48.042	47.812	48.116	0					10	6	2	0	0	0	0.027021	1	3470	3470		27.047	0.29761	1	92920			8476	33677	6911	6921	9507	9507					0.013623065972524273
EMEMAVIYL	9	Unmodified	_EMEMAVIYL_					0	0	0		nc|ENSG00000183833|Q7Z4T9-6|CFAP91;nc|ENSG00000183833|Q7Z4T9-3|CFAP91;nc|ENSG00000183833|Q7Z4T9-8|CFAP91;ENST00000482927.5_1_3:119422024-119469941:+|nuORF;ENSG00000183833|ENST00000273390|CFAP91	nc|ENSG00000183833|Q7Z4T9-6|CFAP91	nc|ENSG00000183833|Q7Z4T9-6|CFAP91	MULTI-MSMS	OvCa99_classI_Rep5	1	549.763916015625	2	549.764129	1097.5137	1.0362	0.00056968	-1.9098	-0.0010499	-0.87354	-0.00048024	549.7628795568598	145.79	2.1821	145.79	145.27	147.45	0					112	44	4	0	0	0	0.25214	1	17011	17011		68.485	2.0554	1	699190			8477	8115	6912	6922	9508	9508					-0.03115200977549648
EMETIVSQS	9	Unmodified	_EMETIVSQS_					0	0	0			REV__ENSG00000205108|ENST00000378788|FAM205A	REV__ENSG00000205108|ENST00000378788|FAM205A	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.789794921875	2	512.23679	1022.45903	0.1321	6.7666E-05	1.319	0.00067563	1.4511	0.00074329	512.7397797242509	58.256	1.0451	58.256	57.65	58.696	0					42	24	2	0	0	0	0.027462	1	4948	4948		34.173	0	1	344980	+		8478	23202	6913	6923	9509	9509					-0.05130496524577666
EMETLEIQ	8	Unmodified	_EMETLEIQ_					0	0	0			REV__nc|ENSG00000040275|Q96EA4-2|SPDL1	REV__nc|ENSG00000040275|Q96EA4-2|SPDL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.2431640625	2	496.733883	991.453213	-0.022939	-1.1394E-05	-1.6273	-0.00080832	-1.6502	-0.00081971	496.7334305897287	105.42	0.4381	105.42	105.18	105.62	0					12	9	2	0	0	0	0.028476	1	11824	11824		35.618	5.1146	1	103720	+		8479	16627	6914	6924	9510	9510					-0.04285595036265022
EMETVLYL	8	Unmodified	_EMETVLYL_					0	0	0			REV__NBAS|p.F1122Sfs*13|1|0.03|ENSG00000151779|chr2:15379827-15379828|-/ATCTGTACCTGTG|frameshift_variant	REV__NBAS|p.F1122Sfs*13|1|0.03|ENSG00000151779|chr2:15379827-15379828|-/ATCTGTACCTGTG|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	499.2486267089844	2	499.249169	996.483784	1.8549	0.00092605	-1.6433	-0.0008204	0.21163	0.00010565	499.2481879476592	91.491	1.3555	91.491	90.777	92.132	0					62	32	3	0	0	0	0.60486	1	9854	9854		62.978	0	1	783850	+		8480	20255	6915	6925	9511	9511					-0.014598166512314492
EMETVLYL	8	Unmodified	_EMETVLYL_					0	0	0			REV__NBAS|p.F1122Sfs*13|1|0.03|ENSG00000151779|chr2:15379827-15379828|-/ATCTGTACCTGTG|frameshift_variant	REV__NBAS|p.F1122Sfs*13|1|0.03|ENSG00000151779|chr2:15379827-15379828|-/ATCTGTACCTGTG|frameshift_variant	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	499.249169	996.483784	1.8549	0.00092605	-1.6433	-0.0008204	0.21163	0.00010565	499.2481879476592	91.491	1.3555	91.491	90.777	92.132	0	-0.0048056	-9.8317E-05	NaN	62.978	62	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	783850	+		8481	20255	6915	6925							-0.014598166512314492
EMETVLYL	8	Unmodified	_EMETVLYL_					0	0	0			REV__NBAS|p.F1122Sfs*13|1|0.03|ENSG00000151779|chr2:15379827-15379828|-/ATCTGTACCTGTG|frameshift_variant	REV__NBAS|p.F1122Sfs*13|1|0.03|ENSG00000151779|chr2:15379827-15379828|-/ATCTGTACCTGTG|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	499.249169	996.483784	0.096933	4.8394E-05	-1.9614	-0.00097924	-1.8645	-0.00093085	499.2480050576963	92.777	0.87718	91.609	91.076	91.953	-1.168	0.11297	-0.000416	NaN	62.978	31	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21504	+		8482	20255	6915	6925							-0.014598166512314492
EMETVLYL	8	Unmodified	_EMETVLYL_					0	0	0			REV__NBAS|p.F1122Sfs*13|1|0.03|ENSG00000151779|chr2:15379827-15379828|-/ATCTGTACCTGTG|frameshift_variant	REV__NBAS|p.F1122Sfs*13|1|0.03|ENSG00000151779|chr2:15379827-15379828|-/ATCTGTACCTGTG|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	499.249169	996.483784	-1.4599	-0.00072885	-0.60373	-0.00030141	-2.0636	-0.0010303	499.2485594128183	93.413	1.2595	91.452	90.981	92.24	-1.9617	-0.044242	0.00093966	NaN	62.978	36	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29750	+		8483	20255	6915	6925							-0.014598166512314492
EMETVLYL	8	Unmodified	_EMETVLYL_					0	0	0			REV__NBAS|p.F1122Sfs*13|1|0.03|ENSG00000151779|chr2:15379827-15379828|-/ATCTGTACCTGTG|frameshift_variant	REV__NBAS|p.F1122Sfs*13|1|0.03|ENSG00000151779|chr2:15379827-15379828|-/ATCTGTACCTGTG|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	499.249169	996.483784	-0.68469	-0.00034183	-1.9536	-0.00097535	-2.6383	-0.0013172	499.24837436418295	93.939	0.66371	91.432	91.257	91.921	-2.5072	-0.063921	-0.00040822	NaN	62.978	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33900	+		8484	20255	6915	6925							-0.014598166512314492
EMEVCTVKFDG	11	Unmodified	_EMEVCTVKFDG_					0	0	0			REV__nc|ENSG00000152894|Q15262|PTPRK	REV__nc|ENSG00000152894|Q15262|PTPRK	MULTI-MSMS	OvCa9_classI_Rep4_	4	629.2772216796875	2	629.278131	1256.54171	-1.1065	-0.00069631	0.89524	0.00056335	-0.21128	-0.00013295	629.2787761772053	118.5	2.2976	117.16	116.89	119.19	-1.3444					117	43	5	0	0	0	0.29406	1	11094	11094		68.846	3.3808	1	542100	+		8485	20308	6916	6926	9512	9512					-0.07629922788123622
EMFERDIEII	10	Unmodified	_EMFERDIEII_					0	0	0			REV__tr|A0A7D6ZU73|A0A7D6ZU73_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_23020PE=4SV=1	REV__tr|A0A7D6ZU73|A0A7D6ZU73_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_23020PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	647.8219604492188	2	647.821021	1293.62749	1.8332	0.0011876	-2.6773	-0.0017344	-0.84403	-0.00054678	647.8190070314735	135.5	1.2173	135.5	135.04	136.25	0					55	25	3	0	0	0	0.13504	1	15780	15780		104.75	14.377	1	750080	+		8486	32214	6917	6927	9513	9513					-0.0075801461091487
EMFIQDKDV	9	Unmodified	_EMFIQDKDV_					0	0	0			REV__ENSG00000166268|ENST00000552032|MYRFL	REV__ENSG00000166268|ENST00000552032|MYRFL	MULTI-MSMS	OvCa99_classI_Rep5	1	562.76611328125	2	562.768257	1123.52196	0.060279	3.3923E-05	-3.716	-0.0020913	-3.6557	-0.0020573	562.7660370416633	41.626	6.1897	41.626	40.795	46.985	0					363	141	3	0	0	0	0.31747	1	2900	2900		60.972	11.53	1	1452500	+		8487	21172	6918	6928	9514	9514					-0.034859307365422865
EMFLEGAQLL	10	Unmodified	_EMFLEGAQLL_					0	0	0			REV__ENSG00000180432|ENST00000316161|CYP8B1	REV__ENSG00000180432|ENST00000316161|CYP8B1	MULTI-MSMS	OvCa99_classI_Rep5	1	575.7931518554688	2	575.794275	1149.574	0.74469	0.00042879	-3.3016	-0.001901	-2.5569	-0.0014723	575.7922064515341	131.66	1.9691	131.66	131.29	133.26	0					65	41	2	0	0	0	0.42962	1	15366	15366		64.207	3.2353	1	355500	+		8488	22172	6919	6929	9515	9515					0.00519232677220316
EMFLFFTAL	9	Unmodified	_EMFLFFTAL_					0	0	0		INTS4-CYP2R1|1|fusion;ENSG00000186104|ENST00000334636|CYP2R1	INTS4-CYP2R1|1|fusion	INTS4-CYP2R1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	559.78271484375	2	559.783179	1117.5518	-2.5577	-0.0014318	2.0341	0.0011387	-0.52357	-0.00029309	559.7841057030945	140.78	1.9736	139.75	139.43	141.41	-1.0339					83	39	3	0	0	0	0.67509	1	11630	11630		23.042	0	1	163230			8489	14507	6920	6930	9516	9516					-0.002269470005558105
EMFPILHGV	9	Unmodified	_EMFPILHGV_					0	0	0			REV__ENSG00000116984|ENST00000366577|MTR	REV__ENSG00000116984|ENST00000366577|MTR	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.2741088867188	2	521.773145	1041.53174	0.69912	0.00036478	3.3335	0.0017393	4.0326	0.0021041	521.7750441871418	150.12	0.44971	150.12	149.94	150.39	0					20	8	3	0	0	0	0.027462	1	17579	17579		33.516	0	1	71962	+		8490	18328	6921	6931	9517	9517					0.012633020595103517
EMFSFSHIC	9	Unmodified	_EMFSFSHIC_					0	0	0			REV__ENSG00000184698|ENST00000642046|OR51M1	REV__ENSG00000184698|ENST00000642046|OR51M1	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3292846679688	2	550.73062	1099.44669	1.6809	0.00092575	-3.3495	-0.0018447	-1.6686	-0.00091895	550.7285720344585	92.627	0.54344	92.627	92.301	92.845	0					22	12	2	0	0	0	0.027462	1	10003	10003		40.573	16.37	1	410190	+		8491	22446	6922	6932	9518	9518					-0.09905811468615866
EMFVRLVL	8	Unmodified	_EMFVRLVL_					0	0	0			REV__nc|ENSG00000180764|A2A3N6|PIPSL	REV__nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.2253723144531	2	503.791338	1005.56812	1.0868	0.00054752	-2.8158	-0.0014186	-1.729	-0.00087105	504.2928488270258	138.95	0.72339	138.95	138.59	139.32	0					22	14	3	0	0	0	0.028476	1	16222	16222		79.939	3.0926	1	42569	+		8492	26463	6923	6933	9519	9519					0.06556178956213898
EMGAWGAPPG	10	Unmodified	_EMGAWGAPPG_					0	0	0			REV__ENST00000367602.7_1_1:180166494-180166779:+|nuORF	REV__ENST00000367602.7_1_1:180166494-180166779:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.29217529296875	2	486.715827	971.417102	-0.64302	-0.00031297	-2.7352	-0.0013313	-3.3783	-0.0016443	486.7139773962772	82.23	0.28981	79.547	79.346	79.635	-2.6829					7	5	2	0	0	0	0.026708	1	6771	6771		42.474	19.432	1	14545	+		8493	24903	6924	6934	9520	9520					-0.06975007422454382
EMGMTFSSAYV	11	Unmodified	_EMGMTFSSAYV_					0	0	0		ENSG00000135677|ENST00000258145|GNS	ENSG00000135677|ENST00000258145|GNS	ENSG00000135677|ENST00000258145|GNS	MULTI-MSMS	OvCa9_classI_Rep3	3	611.76025390625	2	611.759575	1221.5046	2.8507	0.0017439	-3.283	-0.0020084	-0.43231	-0.00026447	611.7574111785548	123.55	1.0326	122.52	122.2	123.24	-1.0377					32	19	2	0	0	0	0.64273	1	9540	9540		40.778	3.6191	1	55340			8494	4398	6925	6935	9521	9521					-0.09729594333862224
EMGQNVKKL	9	Unmodified	_EMGQNVKKL_					0	0	0		ENSG00000141384|ENST00000269142|TAF4B;nc|ENSG00000141384|Q92750-2|TAF4B	ENSG00000141384|ENST00000269142|TAF4B	ENSG00000141384|ENST00000269142|TAF4B	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2708129882812	2	523.786784	1045.55902	1.7028	0.00089188	1.1643	0.00060984	2.867	0.0015017	523.7873042067529	122.17	0.82729	122.17	121.85	122.68	0					26	17	2	0	0	0	0.027026	1	14041	14041		107.01	29.69	1	154580			8495	4907	6926	6936	9522	9522					0.03805785599865885
EMGRAALAIK	10	Unmodified	_EMGRAALAIK_					0	0	0		ENSG00000176428|ENST00000324941|VPS37D	ENSG00000176428|ENST00000324941|VPS37D	ENSG00000176428|ENST00000324941|VPS37D	MULTI-MSMS	OvCa9_classI_Rep2	2	530.3007202148438	2	530.302601	1058.59065	-1.2018	-0.00063734	-2.629	-0.0013942	-3.8308	-0.0020315	530.3011926456317	46.882	1.3381	44.172	43.794	45.133	-2.7097					74	26	4	0	0	0	0.24425	1	2825	2825		87.696	2.7809	1	727090			8496	7607	6927	6937	9523	9523					0.06369778353791844
EMHKLILQT	9	Unmodified	_EMHKLILQT_					0	0	0			REV__ENST00000464104.5_1_9:98997744-99012284:-|nuORF	REV__ENST00000464104.5_1_9:98997744-99012284:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	556.8082275390625	2	556.810259	1111.60597	0.42358	0.00023585	-0.87055	-0.00048473	-0.44697	-0.00024888	556.8098048116499	121.74	1.2193	120.39	120.06	121.28	-1.3479					48	23	3	0	0	0	0.55588	1	11464	11464		37.159	0	1	101620	+		8497	18985	6928	6938	9524	9524					0.0546264515103303
EMHRKLSQY	9	Unmodified	_EMHRKLSQY_					0	0	0			REV__ENSG00000171811|ENST00000368586|CFAP46	REV__ENSG00000171811|ENST00000368586|CFAP46	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.3297729492188	2	596.30059	1190.58663	0.4763	0.00028402	2.7315	0.0016288	3.2078	0.0019128	596.3022568103312	71.935	0.29553	71.935	71.749	72.045	0					10	6	2	0	0	0	0.027462	1	6974	6974		24.519	3.5723	1	239680	+		8498	21648	6929	6939	9525	9525					-0.001043111398757901
EMHVWLLI	8	Unmodified	_EMHVWLLI_					0	0	0		ENST00000437048.6_2_17:531413-534821:-|nuORF	ENST00000437048.6_2_17:531413-534821:-|nuORF	ENST00000437048.6_2_17:531413-534821:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.3031616210938	2	520.783513	1039.55247	1.5996	0.00083305	-2.2389	-0.001166	-0.63928	-0.00033293	520.7821125608158	100.02	1.1194	100.02	99.529	100.65	0					40	26	2	0	0	0	0.028476	1	11022	11022		8.8223	0	1	228440			8499	11883	6930	6940	9526	9526					0.03427892439162861
EMIEELQKR	9	Oxidation (M)	_EM(Oxidation (M))IEELQKR_		EM(1)IEELQKR		EM(53)IEELQKR	0	0	1		ENST00000426778.5_1_2:128015174-128051559:-|nuORF;ENSG00000163161|ENST00000285398|ERCC3;ERCC3|p.K311Nfs*41|1|0.03|ENSG00000163161|chr2:127288754-127288754|C/-|frameshift_variant	ENST00000426778.5_1_2:128015174-128051559:-|nuORF	ENST00000426778.5_1_2:128015174-128051559:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	596.3078002929688	2	596.305538	1190.59652	-0.17714	-0.00010563	-0.016386	-9.7709E-06	-0.19352	-0.0001154	596.3054687087324	46.961	7.1463	46.961	46.587	53.733	0					374	164	4	0	0	0	0.38529	1	4196	4196		53.351	14.099	1	16604000			8500	6274	6931	6941	9527	9527		195			0.00884832074825681
EMIEMEMEE	9	Unmodified	_EMIEMEMEE_					0	0	0			REV__nc|ENSG00000180481|Q4G1C9-5|GLIPR1L2	REV__nc|ENSG00000180481|Q4G1C9-5|GLIPR1L2	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.8141479492188	2	585.7218	1169.42905	0.78508	0.00045984	-3.8316	-0.0022442	-3.0465	-0.0017844	585.7192585159247	131.69	0.23007	131.69	131.58	131.81	0					6	4	2	0	0	0	0.027456	1	15285	15285		47.916	1.9636	1	35770	+		8501	22176	6932	6942	9528	9528					-0.14888939576439952
EMIFSCVQL	9	Unmodified	_EMIFSCVQL_					0	0	0			REV__ENST00000534677.1_1_11:57472348-57479651:-|nuORF	REV__ENST00000534677.1_1_11:57472348-57479651:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	535.2579956054688	2	535.256471	1068.49839	-0.58784	-0.00031465	-0.74495	-0.00039874	-1.3328	-0.00071339	535.2559945697838	61.479	0.92244	61.479	61.2	62.122	0					64	21	4	0	0	0	0.27001	1	5406	5406		66.429	4.3219	1	10205000	+		8502	27272	6933	6943	9529	9529					-0.03312067774731986
EMIIQFGFVT	10	Unmodified	_EMIIQFGFVT_					0	0	0		nc|ENSG00000131620|Q5XXA6-2|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;ENSG00000047617|ENST00000682330|ANO2;nc|ENSG00000047617|Q9NQ90-2|ANO2;nc|ENSG00000047617|Q9NQ90|ANO2;nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6	nc|ENSG00000131620|Q5XXA6-2|ANO1;nc|ENSG00000177119|Q4KMQ2-3|ANO6	nc|ENSG00000131620|Q5XXA6-2|ANO1	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.7073974609375	2	592.804642	1183.59473	2.5918	0.0015364	2.4786	0.0014694	5.0704	0.0030058	592.8060613727022	121.22	0.60144	121.22	120.92	121.52	0					18	13	2	0	0	0	0.026523	1	13930	13930		52.937	0	1	93199			8503	4077;7661	6934	6944	9530	9530					0.010278230568701474
EMIKTTDVV	9	Unmodified	_EMIKTTDVV_					0	0	0			REV__tr|A0A7D6VV42|A0A7D6VV42_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09385PE=3SV=1	REV__tr|A0A7D6VV42|A0A7D6VV42_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09385PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.7932739257812	2	518.273175	1034.5318	2.1834	0.0011316	1.4016	0.00072641	3.585	0.001858	518.7742161425147	106.37	0.3071	106.37	106.18	106.49	0					11	6	3	0	0	0	0.027462	1	11981	11981		39.253	0	1	140330	+		8504	31706	6935	6945	9531	9531					0.015912572688193904
EMIKTTDVV	9	Unmodified	_EMIKTTDVV_					0	0	0			REV__tr|A0A7D6VV42|A0A7D6VV42_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09385PE=3SV=1	REV__tr|A0A7D6VV42|A0A7D6VV42_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09385PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	518.273175	1034.5318	0.10433	5.4069E-05	7.809	0.0040472	7.9134	0.0041013	518.2769891414347	106.49	1.4429	106.18	105.53	106.97	-0.30836	0.021282	-0.00054517	NaN	39.253	60	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113840	+		8505	31706	6935	6945							0.015912572688193904
EMIKTTDVV	9	Unmodified	_EMIKTTDVV_					0	0	0			REV__tr|A0A7D6VV42|A0A7D6VV42_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09385PE=3SV=1	REV__tr|A0A7D6VV42|A0A7D6VV42_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09385PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	518.273175	1034.5318	0.7556	0.00039161	7.0804	0.0036696	7.836	0.0040612	518.2766786889309	107.31	2.0345	106.04	104.8	106.83	-1.267	-0.11592	-0.0013004	NaN	39.253	79	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118590	+		8506	31706	6935	6945							0.015912572688193904
EMIKTTDVV	9	Unmodified	_EMIKTTDVV_					0	0	0			REV__tr|A0A7D6VV42|A0A7D6VV42_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09385PE=3SV=1	REV__tr|A0A7D6VV42|A0A7D6VV42_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09385PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	518.273175	1034.5318	-2.3272	-0.0012061	10.146	0.0052582	7.8184	0.004052	518.2782317648098	107.92	1.9115	106.04	104.8	106.71	-1.8785	-0.11586	0.0018768	NaN	39.253	55	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137290	+		8507	31706	6935	6945							0.015912572688193904
EMIPTPLAL	9	Unmodified	_EMIPTPLAL_					0	0	0		tr|A0A553SIQ7|A0A553SIQ7_NIACISporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_15330PE=3SV=1	tr|A0A553SIQ7|A0A553SIQ7_NIACISporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_15330PE=3SV=1	tr|A0A553SIQ7|A0A553SIQ7_NIACISporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_15330PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.7778625488281	2	492.775354	983.536154	0.05049	2.488E-05	3.8074	0.0018762	3.8579	0.0019011	492.7770261100685	76.331	1.8631	73.392	72.985	74.848	-2.9389					78	38	3	0	0	0	0.21395	1	6058	6058		73.975	13.003	1	1161800			8508	33412	6936	6946	9532	9532					0.0437276648237912
EMIQQIIEE	9	Unmodified	_EMIQQIIEE_					0	0	0		chr5:10258535-10262481|193|17.88|0.89|4.33|+|0|CCT5,CCT5|1	chr5:10258535-10262481|193|17.88|0.89|4.33|+|0|CCT5,CCT5|1	chr5:10258535-10262481|193|17.88|0.89|4.33|+|0|CCT5,CCT5|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	567.3199462890625	2	566.781364	1131.54818	-1.6358	-0.00092717	4.4866	0.0025429	2.8507	0.0016157	566.783350312058	84.805	0.9469	83.259	82.848	83.795	-1.5462					24	18	2	0	0	0	0.027026	1	7294	7294		107.01	24.767	1	16367			8509	492	6937	6947	9533	9533					-0.012336615650610838
EMITQVKDL	9	Unmodified	_EMITQVKDL_					0	0	0			REV__ENSG00000119965|ENST00000481909|C10orf88	REV__ENSG00000119965|ENST00000481909|C10orf88	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.3203735351562	2	538.78645	1075.55835	1.2503	0.00067364	-2.7411	-0.0014769	-1.4908	-0.00080325	538.7848473750838	123.43	0.64813	123.43	123.14	123.79	0					27	13	3	0	0	0	0.02704	1	14267	14267		80.455	5.4113	1	230890	+		8510	18478	6938	6948	9534	9534					0.023589461601659423
EMIVMEIEE	9	Unmodified	_EMIVMEIEE_					0	0	0			REV__CLEC16A|p.Q832Rfs*57|1|0.03|ENSG00000038532|chr16:11126000-11126000|A/-|frameshift_variant	REV__CLEC16A|p.Q832Rfs*57|1|0.03|ENSG00000038532|chr16:11126000-11126000|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	561.758056640625	2	561.756501	1121.49845	1.0872	0.00061075	2.4116	0.0013547	3.4988	0.0019655	561.757717613742	63.682	3.3714	60.689	60	63.371	-2.9933					120	66	3	0	0	0	0.55588	1	2402	2402		37.159	3.6435	1	89773	+		8511	16149	6939	6949	9535	9535					-0.05744112565389514
EMIYKELKSL	10	Unmodified	_EMIYKELKSL_					0	0	0			REV__tr|A0A553SG27|A0A553SG27_NIACItRNAepoxyqueuosine(34)reductaseQueGOS=NialliacirculansOX=1397GN=queGPE=4SV=1	REV__tr|A0A553SG27|A0A553SG27_NIACItRNAepoxyqueuosine(34)reductaseQueGOS=NialliacirculansOX=1397GN=queGPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.54962158203125	3	418.56518	1252.67371	0.38106	0.0001595	-2.0263	-0.00084816	-1.6453	-0.00068866	418.56426484873475	56.729	0.63998	56.729	56.498	57.138	0					32	14	4	0	0	0	0.026916	1	4705	4705		17.833	0	1	879130	+		8512	29652	6940	6950	9536	9536					0.05748050291163054
EMKALLLIL	9	Unmodified	_EMKALLLIL_					0	0	0		tr|A0A553SRC4|A0A553SRC4_NIACIBeta-N-acetylhexosaminidaseOS=NialliacirculansOX=1397GN=CEQ21_00705PE=3SV=1	tr|A0A553SRC4|A0A553SRC4_NIACIBeta-N-acetylhexosaminidaseOS=NialliacirculansOX=1397GN=CEQ21_00705PE=3SV=1	tr|A0A553SRC4|A0A553SRC4_NIACIBeta-N-acetylhexosaminidaseOS=NialliacirculansOX=1397GN=CEQ21_00705PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.791015625	2	522.330296	1042.64604	1.3924	0.00072732	-2.6586	-0.0013887	-1.2662	-0.00066136	522.3288114600058	137.99	0.95381	137.99	137.4	138.35	0					48	20	3	0	0	0	0.027448	1	16127	16127		63.306	9.9548	1	267190			8513	34250	6941	6951	9537	9537					0.12642191821601045
EMKDVDMTF	9	Unmodified	_EMKDVDMTF_					0	0	0			REV__tr|A0A553SL33|A0A553SL33_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_19875PE=4SV=1	REV__tr|A0A553SL33|A0A553SL33_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_19875PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	558.2413330078125	2	558.241018	1114.46748	0.10444	5.8305E-05	0.00096786	5.403E-07	0.10541	5.8845E-05	558.2407957364876	129.77	1.2857	128.66	128.39	129.67	-1.1121					56	25	3	0	0	0	0.5811	1	10302	10302		34.173	0.65696	1	138850	+		8514	30180	6942	6952	9538	9538					-0.08517265879640945
EMKEKLLEA	9	Unmodified	_EMKEKLLEA_					0	0	0			REV__ENSG00000198483|ENST00000355594|ANKRD35	REV__ENSG00000198483|ENST00000355594|ANKRD35	MULTI-SECPEP	OvCa9_classI_Rep3	3	544.8216552734375	2	545.794275	1089.574	-1.1413	-0.00062292	-2.0453	-0.0011163	-3.1866	-0.0017392	545.7927673462993	117.4	0.8427	116.36	116.04	116.89	-1.0324					26	16	3	0	0	0	0.027462	1	8792	8792		29.15	0	1	29851	+		8515	23021	6943	6953	9539	9539					0.0327923267720962
EMKELQKI	8	Unmodified	_EMKELQKI_					0	0	0		nc|ENSG00000122507|Q3SYG4-6|BBS9;nc|ENSG00000122507|Q3SYG4-2|BBS9;nc|ENSG00000122507|Q3SYG4-4|BBS9;nc|ENSG00000122507|Q3SYG4-7|BBS9;nc|ENSG00000122507|Q3SYG4-3|BBS9;ENSG00000122507|ENST00000242067|BBS9	nc|ENSG00000122507|Q3SYG4-6|BBS9	nc|ENSG00000122507|Q3SYG4-6|BBS9	MULTI-MSMS	OvCa99_classI_Rep5	1	509.7836608886719	2	509.78371	1017.55287	-0.24744	-0.00012614	-2.9688	-0.0015134	-3.2162	-0.0016396	509.7821549574752	67.649	0.74361	67.649	67.408	68.152	0					37	18	4	0	0	0	0.25383	1	6331	6331		115.49	3.0831	1	5747200			8516	3536	6944	6954	9540	9540					0.04479267368344608
EMKNGYKLP	9	Unmodified	_EMKNGYKLP_					0	0	0		ENST00000419152.6_1_8:144668989-144676077:-|nuORF	ENST00000419152.6_1_8:144668989-144676077:-|nuORF	ENST00000419152.6_1_8:144668989-144676077:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2540893554688	2	540.281334	1078.54812	1.7703	0.00095648	2.8038	0.0015149	4.5742	0.0024713	540.2821780612963	108.79	0.60893	108.79	108.54	109.15	0					22	13	2	0	0	0	0.027462	1	12331	12331		27.882	0	1	369650			8517	11650	6945	6955	9541	9541					0.011983832255964444
EMKPLACYI	9	Unmodified	_EMKPLACYI_					0	0	0			REV__ENST00000368921.4_1_1:151032270-151032444:+|nuORF	REV__ENST00000368921.4_1_1:151032270-151032444:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.8314208984375	2	534.266838	1066.51912	0.42248	0.00022572	-1.5555	-0.00083105	-1.133	-0.00060533	534.7687107117388	103.37	0.29174	103.37	103.22	103.51	0					9	6	2	0	0	0	0.027426	1	11573	11573		73.975	21.038	1	105450	+		8518	24930	6946	6956	9542	9542					-0.011474773950567396
EMKQLKLLS	9	Unmodified	_EMKQLKLLS_					0	0	0			REV__ENSG00000155903|ENST00000286364|RASA2	REV__ENSG00000155903|ENST00000286364|RASA2	MULTI-MSMS	OvCa9_classI_Rep2	2	545.317626953125	2	545.32046	1088.62637	-1.828	-0.00099686	-1.9254	-0.00105	-3.7534	-0.0020468	545.3193247612335	62.213	1.8935	59.454	58.882	60.775	-2.7593					104	36	5	0	0	0	0.055627	2	4672	4660;4672		115.49	6.0157	1	1098800	+		8519	20448	6947	6957	9543;9544	9544					0.08559815810826876
EMKQLKLLS	9	Unmodified	_EMKQLKLLS_					0	0	0			REV__ENSG00000155903|ENST00000286364|RASA2	REV__ENSG00000155903|ENST00000286364|RASA2	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.3192138671875	2	545.32046	1088.62637	-0.88078	-0.0004803	-2.9723	-0.0016209	-3.8531	-0.0021012	545.3187982424363	63.028	1.7371	59.553	59.291	61.028	-3.475					105	35	5	0	0	0	0.066102	1	4442	4442		109.48	5.4215	1	2714300	+		8520	20448	6947	6957	9545	9545					0.08559815810826876
EMKQYVTQI	9	Unmodified	_EMKQYVTQI_					0	0	0		nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1;nc|ENSG00000124126|Q8TCU6-2|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	MULTI-MSMS	OvCa9_classI_Rep2	2	570.2899780273438	2	570.291899	1138.56925	-2.1858	-0.0012466	-0.59307	-0.00033823	-2.7789	-0.0015848	570.2913769953735	118.87	1.3845	118.72	118.33	119.72	-0.14755					75	27	4	0	0	0	0.46356	1	11447	11447		45.972	4.5456	1	143160			8521	14997	6948	6958	9546	9546					0.0055034853444340115
EMKRAKED	8	Unmodified	_EMKRAKED_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN-WDR67|2|fusion;UTRN-WDR67|1|fusion	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.7999267578125	2	503.752941	1005.49133	0.35736	0.00018002	1.0019	0.00050473	1.3593	0.00068475	503.7531849151327	103.37	0.41746	103.37	103.18	103.6	0					23	9	3	0	0	0	0.028476	1	11568	11568		63.306	43.309	1	385850			8522	5647	6949	6959	9547	9547					-0.011196643309290266
EMKRSLQYT	9	Unmodified	_EMKRSLQYT_					0	0	0		CAAP1-TNNI3K|1|fusion;ENSG00000116783|ENST00000326637|TNNI3K;nc|ENSG00000116783|Q59H18-1|TNNI3K	CAAP1-TNNI3K|1|fusion	CAAP1-TNNI3K|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.2874755859375	2	578.294973	1154.57539	-6.4833	-0.0037493	-3.688	-0.0021328	-10.171	-0.005882	578.2924756503293	159.15	2.0345	157.57	156.14	158.17	-1.5858					77	57	2	0	0	0	0.51865	1	15687	15687		40.778	10.275	1	24594			8523	170	6950	6960	9548	9548					0.004288667659693601
EMLCCCTIAG	10	2 Carbamidomethyl (C),Oxidation (M)	_EM(Oxidation (M))LC(Carbamidomethyl (C))CC(Carbamidomethyl (C))TIAG_	EMLC(0.872)C(0.256)C(0.872)TIAG	EM(1)LCCCTIAG	EMLC(7.6)C(-7.6)C(7.6)TIAG	EM(66)LCCCTIAG	0	2	1			REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4	REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-MSMS	OvCa99_classI_Rep5	1	587.2264404296875	2	587.223987	1172.43342	2.1816	0.0012811	2.6342	0.0015469	4.8158	0.0028279	587.2254205639937	115.56	1.0237	115.56	115.3	116.32	0					52	21	4	0	0	0	0.41408	1	13198	13198		66.429	22.312	3	1291200	+		8524	18871	6951	6961	9549	9549	205;206	435			-0.1458975363452737
EMLCCCTIAG	10	2 Carbamidomethyl (C),Oxidation (M)	_EM(Oxidation (M))LC(Carbamidomethyl (C))CC(Carbamidomethyl (C))TIAG_					0	2	1			REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4	REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	587.223987	1172.43342	-0.83631	-0.0004911	3.0318	0.0017803	2.1955	0.0012892	587.225756182427	115.58	0.9883	115.47	114.95	115.94	-0.11777	0.15842	-2.1852E-05	NaN	66.429	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21103	+		8525	18871	6951	6961			205;206	435			-0.1458975363452737
EMLCCCTIAG	10	2 Carbamidomethyl (C),Oxidation (M)	_EM(Oxidation (M))LC(Carbamidomethyl (C))CC(Carbamidomethyl (C))TIAG_					0	2	1			REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4	REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	587.223987	1172.43342	-2.0777	-0.0012201	3.9483	0.0023185	1.8706	0.0010985	587.2262603428294	116.2	0.79002	115.15	114.9	115.69	-1.0414	-0.15178	0.0010545	NaN	66.429	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33503	+		8526	18871	6951	6961			205;206	435			-0.1458975363452737
EMLCCCTIAG	10	2 Carbamidomethyl (C),Oxidation (M)	_EM(Oxidation (M))LC(Carbamidomethyl (C))CC(Carbamidomethyl (C))TIAG_					0	2	1			REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4	REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	587.223987	1172.43342	-0.40437	-0.00023746	2.5076	0.0014725	2.1032	0.0012351	587.2254657205791	116.41	0.97876	115.05	114.84	115.82	-1.3645	-0.25864	-0.00063749	NaN	66.429	30	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18964	+		8527	18871	6951	6961			205;206	435			-0.1458975363452737
EMLDKTTGKR	10	Unmodified	_EMLDKTTGKR_					0	0	0			REV__nc|ENSG00000170011|Q8NFW9-4|MYRIP	REV__nc|ENSG00000170011|Q8NFW9-4|MYRIP	MULTI-MSMS	OvCa99_classI_Rep5	1	589.8170776367188	2	589.81353	1177.61251	0.084939	5.0098E-05	2.8404	0.0016753	2.9253	0.0017254	589.8152536393142	70.859	3.0313	70.859	70.369	73.4	0					178	75	5	0	0	0	0.32926	1	6956	6956		77.318	9.8239	1	75284000	+		8528	21508	6952	6962	9550	9550					0.030805383117240126
EMLEKMQDD	9	Unmodified	_EMLEKMQDD_					0	0	0		nc|ENSG00000132359|Q684P5-2|RAP1GAP2	nc|ENSG00000132359|Q684P5-2|RAP1GAP2	nc|ENSG00000132359|Q684P5-2|RAP1GAP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.7810668945312	2	569.741382	1137.46821	1.7567	0.0010008	1.6134	0.00091922	3.3701	0.0019201	569.7423288112988	129.54	0.2281	129.54	129.4	129.63	0					6	4	2	0	0	0	0.027462	1	15006	15006		56.721	17.915	1	25222			8529	15016	6953	6963	9551	9551					-0.09502471230553056
EMLGDVALSL	10	Unmodified	_EMLGDVALSL_					0	0	0			REV__PCNT|p.A2734Qfs*36|1|0.3|ENSG00000160299|chr21:46431663-46431664|-/CAGAA|frameshift_variant	REV__PCNT|p.A2734Qfs*36|1|0.3|ENSG00000160299|chr21:46431663-46431664|-/CAGAA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	524.27197265625	2	524.273175	1046.5318	-1.2665	-0.00066397	-2.1182	-0.0011105	-3.3847	-0.0017745	524.2719353297791	119.84	3.5537	119.67	119.05	122.61	-0.17138					188	71	5	0	0	0	0.59703	1	11635	11635		42.396	6.7778	1	902400	+		8530	20654	6954	6964	9552	9552					0.01039257268826077
EMLLFCSEE	9	Unmodified	_EMLLFCSEE_					0	0	0		ENST00000505065.1_1_5:130727572-130727803:+|nuORF	ENST00000505065.1_1_5:130727572-130727803:+|nuORF	ENST00000505065.1_1_5:130727572-130727803:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.208984375	2	550.735568	1099.45658	-0.18975	-0.0001045	4.4864	0.0024708	4.2967	0.0023663	551.2398228829259	71.65	0.37006	71.65	71.507	71.877	0					14	8	2	0	0	0	0.027462	1	6949	6949		45.952	8.7928	1	247100			8531	12887	6955	6965	9553	9553					-0.08916668253891658
EMLLKAAKSR	10	Unmodified	_EMLLKAAKSR_					0	0	0		ENSG00000141384|ENST00000269142|TAF4B	ENSG00000141384|ENST00000269142|TAF4B	ENSG00000141384|ENST00000269142|TAF4B	MULTI-MSMS	OvCa99_classI_Rep5	1	573.8363037109375	2	573.836808	1145.65906	1.9339	0.0011097	-3.4667	-0.0019893	-1.5328	-0.00087958	573.8348381216489	85.026	2.6234	85.026	84.431	87.054	0					187	63	4	0	0	0	0.28422	1	8914	8914		82.75	8.4954	1	90195000			8532	4907	6956	6966	9554	9554					0.09206022933653912
EMLLLRKET	9	Unmodified	_EMLLLRKET_					0	0	0			REV__TTC12|p.L695Afs*10|1|0.03|ENSG00000149292|chr11:113366264-113366265|-/G|frameshift_variant	REV__TTC12|p.L695Afs*10|1|0.03|ENSG00000149292|chr11:113366264-113366265|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.8102416992188	2	566.823366	1131.63218	1.3819	0.00078329	2.3896	0.0013545	3.7715	0.0021378	566.824467093781	114.27	1.0912	112.82	112.48	113.57	-1.4461					31	20	3	0	0	0	0.027462	1	10653	10653		40.778	15.204	1	22356	+		8533	20154	6957	6967	9555	9555					0.07162914322498182
EMLLQVFEP	9	Unmodified	_EMLLQVFEP_					0	0	0			REV__TRPV3|p.I277F|1|0.38|ENSG00000167723|chr17:3532893-3532893|T/A|missense_variant	REV__TRPV3|p.I277F|1|0.38|ENSG00000167723|chr17:3532893-3532893|T/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	553.2848510742188	2	553.283543	1104.55253	0.8514	0.00047107	2.4441	0.0013523	3.2955	0.0018233	553.284790859176	109.08	1.8792	108.85	108.22	110.1	-0.22498					106	37	5	0	0	0	0.070405	2	10230	10213;10230		107.01	18.831	1	452190	+		8534	32733	6958	6968	9556;9557	9557					0.004438476484892817
EMLLQVFEP	9	Unmodified	_EMLLQVFEP_					0	0	0			REV__TRPV3|p.I277F|1|0.38|ENSG00000167723|chr17:3532893-3532893|T/A|missense_variant	REV__TRPV3|p.I277F|1|0.38|ENSG00000167723|chr17:3532893-3532893|T/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	553.28515625	2	553.283543	1104.55253	-0.59107	-0.00032703	3.9399	0.0021799	3.3488	0.0018528	553.2856857803561	109.73	1.7878	108.59	107.77	109.56	-1.1444					78	33	4	0	0	0	0.043101	1	7897	7897		124.08	41.84	1	975780	+		8535	32733	6958	6968	9558	9558					0.004438476484892817
EMLPDLSFSR	10	Unmodified	_EMLPDLSFSR_					0	0	0			REV__TNS2|p.P1240Lfs*67|1|0.09|ENSG00000111077|chr12:53062426-53062427|-/T|frameshift_variant	REV__TNS2|p.P1240Lfs*67|1|0.09|ENSG00000111077|chr12:53062426-53062427|-/T|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	597.7945556640625	2	597.794806	1193.57506	1.0415	0.00062263	-3.5955	-0.0021493	-2.5539	-0.0015267	597.792128201169	132.02	1.5995	132.02	131.48	133.08	0					90	33	5	0	0	0	0.45822	1	15299	15299		60.118	5.3419	1	293550	+		8536	18016	6959	6969	9559	9559					-0.013985529539013442
EMLSPVDPLL	10	Unmodified	_EMLSPVDPLL_					0	0	0			REV__nc|ENSG00000125505|Q96N66-3|MBOAT7	REV__nc|ENSG00000125505|Q96N66-3|MBOAT7	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.2987670898438	2	557.29665	1112.57875	0.67214	0.00037458	-2.4116	-0.001344	-1.7394	-0.00096939	557.2952302846592	142.74	3.2015	141.29	140.1	143.3	-1.4427					104	61	2	0	0	0	0.59703	1	13987	13987		42.396	3.1433	1	35102	+		8537	18729	6960	6970	9560	9560					0.026961168199704844
EMLSPVDPLL	10	Unmodified	_EMLSPVDPLL_					0	0	0			REV__nc|ENSG00000125505|Q96N66-3|MBOAT7	REV__nc|ENSG00000125505|Q96N66-3|MBOAT7	MULTI-MATCH	OvCa9_classI_Rep3	3		2	557.29665	1112.57875	-3.0344	-0.0016911	1.211	0.0006749	-1.8234	-0.0010162	557.2972755360994	142.28	3.7594	141.27	140.19	143.95	-1.0106	-0.010892	0.0029415	NaN	42.396	103	75	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21475	+		8538	18729	6960	6970							0.026961168199704844
EMLTLKVESA	10	Unmodified	_EMLTLKVESA_					0	0	0			REV__tr|A0A553SHG4|A0A553SHG4_NIACINucleosidetriphosphatepyrophosphohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_12855PE=4SV=1	REV__tr|A0A553SHG4|A0A553SHG4_NIACINucleosidetriphosphatepyrophosphohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_12855PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	561.8048706054688	2	560.799557	1119.58456	-1.2069	-0.00067685	-0.07722	-4.3305E-05	-1.2842	-0.00072015	560.7983679354917	101.63	2.41	100.07	99.592	102	-1.5638					151	45	7	0	0	0	0.39172	1	6940	6940		69.628	0.8408	1	2421700	+		8539	29801	6961	6971	9561	9561					0.029552153316444674
EMMESQTLLL	10	Unmodified	_EMMESQTLLL_					0	0	0		nc|ENSG00000131351|Q9BT25-2|HAUS8;nc|ENSG00000131351|Q9BT25-3|HAUS8;ENSG00000131351|ENST00000253669|HAUS8	nc|ENSG00000131351|Q9BT25-2|HAUS8	nc|ENSG00000131351|Q9BT25-2|HAUS8	MULTI-MSMS	OvCa99_classI_Rep5	1	597.7928466796875	2	597.790875	1193.5672	1.0416	0.00062263	2.9809	0.0017819	4.0224	0.0024046	597.792128201169	132.02	1.5995	132.02	131.48	133.08	0					90	33	5	0	0	0	0.45822	1	15322	15322		60.118	3.3972	1	293550			8540	4055	6962	6972	9562	9562					-0.021844482656433684
EMMFWREYKQI	11	Unmodified	_EMMFWREYKQI_					0	0	0		ENST00000373930.3_1_9:123365690-123365822:-|nuORF	ENST00000373930.3_1_9:123365690-123365822:-|nuORF	ENST00000373930.3_1_9:123365690-123365822:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.3115234375	3	520.916107	1559.72649	-0.92424	-0.00048145	0.51289	0.00026717	-0.41135	-0.00021428	521.2514201099159	83.753	0.57932	81.492	81.302	81.881	-2.261					18	12	2	0	0	0	0.026448	1	4787	4787		13.508	0	1	54156			8541	11020	6963	6973	9563	9563					-0.030983149176790903
EMMILSIL	8	Unmodified	_EMMILSIL_					0	0	0		ENSG00000166111|ENST00000610966|SVOP	ENSG00000166111|ENST00000610966|SVOP	ENSG00000166111|ENST00000610966|SVOP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.79327392578125	2	475.258482	948.502411	-0.58365	-0.00027738	0.54693	0.00025993	-0.036721	-1.7452E-05	475.25877537610086	71.844	1.0214	68.388	68.074	69.096	-3.4563					42	20	3	0	0	0	0.028476	1	5519	5519		12.959	0	1	51522			8542	6638	6964	6974	9564	9564					0.026100217190219155
EMNDPVKLI	9	Unmodified	_EMNDPVKLI_					0	0	0		tr|A0A7D6ZXA4|A0A7D6ZXA4_9CLOTAscorbate-specificPTSsystemEIIAcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11260PE=4SV=1	tr|A0A7D6ZXA4|A0A7D6ZXA4_9CLOTAscorbate-specificPTSsystemEIIAcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11260PE=4SV=1	tr|A0A7D6ZXA4|A0A7D6ZXA4_9CLOTAscorbate-specificPTSsystemEIIAcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11260PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.78466796875	2	529.781167	1057.54778	-0.098659	-5.2268E-05	0.96641	0.00051199	0.86775	0.00045972	529.7822098724507	56.797	0.50655	56.797	56.498	57.004	0					25	11	3	0	0	0	0.027455	1	4752	4752		60.972	30.468	1	464850			8543	35871	6965	6975	9565	9565					0.021309635057377818
EMNKALKKV	9	Unmodified	_EMNKALKKV_					0	0	0			REV__CACNA2D3-DAP3|1|fusion;REV__ENSG00000157445|ENST00000474759|CACNA2D3	REV__CACNA2D3-DAP3|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	530.8124389648438	2	530.812802	1059.61105	1.6116	0.00085545	-3.1252	-0.0016589	-1.5136	-0.00080345	530.8117641681001	133.28	1.1618	133.28	132.89	134.06	0					51	24	3	0	0	0	0.48047	1	15484	15484		44.377	1.981	1	272830	+		8544	15731;20521	6966	6976	9566	9566					0.08362949013621801
EMNKALKKV	9	Unmodified	_EMNKALKKV_					0	0	0			REV__CACNA2D3-DAP3|1|fusion;REV__ENSG00000157445|ENST00000474759|CACNA2D3	REV__CACNA2D3-DAP3|1|fusion	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	530.812802	1059.61105	1.6116	0.00085545	-3.1252	-0.0016589	-1.5136	-0.00080345	530.8117641681001	133.28	1.1618	133.28	132.89	134.06	0	0	0	NaN	44.377	51	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	272830	+		8545	15731;20521	6966	6976							0.08362949013621801
EMNNGAATKL	10	Oxidation (M)	_EM(Oxidation (M))NNGAATKL_		EM(1)NNGAATKL		EM(48)NNGAATKL	0	0	1			REV__nc|ENSG00000178802|P34949-2|MPI	REV__nc|ENSG00000178802|P34949-2|MPI	MULTI-MSMS	OvCa99_classI_Rep5	1	532.7545166015625	2	532.755681	1063.49681	0.12934	6.8906E-05	-3.5632	-0.0018983	-3.4339	-0.0018294	532.7536820306991	64.912	0.72783	64.912	64.503	65.231	0					38	17	3	0	0	0	0.55109	1	5935	5935		47.96	7.1814	1	2015400	+		8546	29028	6967	6977	9567	9567		641			-0.0323998553913043
EMNRGVSFCF	10	Unmodified	_EMNRGVSFCF_					0	0	0			REV__ENST00000448173.5_1_7:72469630-72469741:-|nuORF	REV__ENST00000448173.5_1_7:72469630-72469741:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	595.260009765625	2	595.260076	1188.5056	-0.89914	-0.00053522	-0.47916	-0.00028522	-1.3783	-0.00082045	595.2596262808174	124.71	1.5833	123.32	122.97	124.55	-1.3908					67	30	3	0	0	0	0.6104	1	11830	11830		40.778	8.8233	1	76813	+		8547	25931	6968	6978	9568	9568					-0.08111335174271517
EMNVNIPQL	9	Unmodified	_EMNVNIPQL_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;ENST00000528411.1_1_11:85734561-85780352:-|nuORF	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MSMS	OvCa99_classI_Rep5	1	529.27001953125	2	529.270967	1056.52738	2.0165	0.0010673	0.17385	9.2016E-05	2.1904	0.0011593	529.2709143301529	110.62	2.1589	110.62	109.86	112.02	0					135	47	5	0	0	0	0.12365	1	12503	12503		90.777	0.40684	1	8549300			8548	1504	6969	6979	9569	9569					0.0013779284593056218
EMPAQGLSLL	10	Unmodified	_EMPAQGLSLL_					0	0	0		ENST00000327574.4_1_21:45152323-45152389:+|nuORF	ENST00000327574.4_1_21:45152323-45152389:+|nuORF	ENST00000327574.4_1_21:45152323-45152389:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	529.7870483398438	2	529.781167	1057.54778	0.6452	0.00034181	-1.5714	-0.0008325	-0.92621	-0.00049069	529.780170207059	141.53	1.2049	141.53	140.88	142.09	0					37	23	2	0	0	0	0.39172	1	16535	16535		69.628	2.134	1	214930			8549	10417	6970	6980	9570	9570					0.021309635057377818
EMPKKKKIK	9	Unmodified	_EMPKKKKIK_					0	0	0		tr|A0A7D6VS23|A0A7D6VS23_9CLOTRNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21180PE=4SV=1	tr|A0A7D6VS23|A0A7D6VS23_9CLOTRNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21180PE=4SV=1	tr|A0A7D6VS23|A0A7D6VS23_9CLOTRNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21180PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	565.3626708984375	2	565.359919	1128.70529	1.1665	0.00065949	4.4697	0.002527	5.6362	0.0031865	565.3622496510778	122.79	1.6628	121.77	121.48	123.14	-1.0286					74	31	4	0	0	0	0.46356	1	9451	9451		45.972	6.7194	1	327540			8550	34978	6971	6981	9571	9571					0.1460808783574521
EMPSIINEEV	10	Unmodified	_EMPSIINEEV_					0	0	0			REV__ENST00000492103.1_1_3:9822043-9829075:-|nuORF	REV__ENST00000492103.1_1_3:9822043-9829075:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	580.7794189453125	2	580.778822	1159.54309	-0.48583	-0.00028216	-2.26	-0.0013125	-2.7458	-0.0015947	580.7772597879881	103.5	1.431	103.5	102.98	104.41	0					76	33	4	0	0	0	0.40664	1	11584	11584		67.494	1.6905	1	4151900	+		8551	21598	6972	6982	9572	9572					-0.03029965427708703
EMRGFKASFL	10	Unmodified	_EMRGFKASFL_					0	0	0			REV__ENST00000607055.1_1_20:32259974-32260046:-|nuORF	REV__ENST00000607055.1_1_20:32259974-32260046:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	593.3102416992188	2	593.307884	1184.60121	1.7284	0.0010255	0.77214	0.00045812	2.5006	0.0014836	593.3081929184839	133.35	0.45335	133.35	133.13	133.58	0					22	9	3	0	0	0	0.5635	1	15510	15510		46.457	7.6506	1	268070	+		8552	28082	6973	6983	9573	9573					0.016297610082574465
EMRHRFRQL	9	Unmodified	_EMRHRFRQL_					0	0	0		ENSG00000144481|ENST00000324695|TRPM8;nc|ENSG00000144481|Q7Z2W7-4|TRPM8;ENST00000444298.5_1_2:234856214-234923253:+|nuORF	ENSG00000144481|ENST00000324695|TRPM8	ENSG00000144481|ENST00000324695|TRPM8	MULTI-MSMS	OvCa99_classI_Rep5	1	636.8423461914062	2	636.840748	1271.66694	-0.47045	-0.0002996	1.0792	0.00068727	0.60875	0.00038768	636.841983811033	26.393	0.50008	26.393	26.042	26.542	0					24	9	3	0	0	0	0.62352	1	692	692		29.15	1.2673	1	64110			8553	5153	6974	6984	9574	9574					0.04197594973811647
EMRKVLEKL	9	Unmodified	_EMRKVLEKL_					0	0	0		nc|ENSG00000176438|Q6ZMZ3-3|SYNE3;SYNE3|p.T871Ifs*3|1|0.04|ENSG00000176438|chr14:95433335-95433336|GG/-|frameshift_variant;nc|ENSG00000176438|Q6ZMZ3-2|SYNE3;ENSG00000176438|ENST00000682763|SYNE3;ENST00000555759.1_1_14:95918480-95934190:-|nuORF;SYNE3|p.S490Ffs*56|1|0.23|ENSG00000176438|chr14:95446074-95446075|-/TGACCATTCTGCTTCAGTGTCCTCGTGTGTAAAA|frameshift_variant;SYNE3|p.R313_L315del|1|0.03|ENSG00000176438|chr14:95455570-95455578|AGGGCGCGC/-|inframe_deletion	nc|ENSG00000176438|Q6ZMZ3-3|SYNE3	nc|ENSG00000176438|Q6ZMZ3-3|SYNE3	MULTI-MSMS	OvCa99_classI_Rep5	1	573.3370361328125	2	573.339184	1144.66381	0.84135	0.00048238	1.7357	0.00099514	2.577	0.0014775	573.3400460164405	154.07	1.5876	154.07	153.69	155.27	0					88	31	4	0	0	0	0.44568	1	18107	18107		47.657	1.2006	1	150510			8554	7609	6975	6985	9575	9575					0.09726907076446878
EMRLEQVVE	9	Unmodified	_EMRLEQVVE_					0	0	0			REV__ENSG00000175985|ENST00000322564|PLEKHD1	REV__ENSG00000175985|ENST00000322564|PLEKHD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.3212280273438	2	566.786981	1131.55941	0.47609	0.00026984	4.3607	0.0024716	4.8368	0.0027414	566.789167144896	94.383	0.78625	91.914	91.524	92.31	-2.4685					31	14	3	0	0	0	0.027455	1	8224	8224		43.651	7.204	1	118560	+		8555	21925	6976	6986	9576	9576					-0.0011083947092629387
EMRLEQVVE	9	Unmodified	_EMRLEQVVE_					0	0	0			REV__ENSG00000175985|ENST00000322564|PLEKHD1	REV__ENSG00000175985|ENST00000322564|PLEKHD1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	566.786981	1131.55941	2.2143	0.001255	5.5201	0.0031287	7.7344	0.0043837	566.7900048736798	91.971	0.63167	91.971	91.711	92.343	0	0.072441	0.00010809	NaN	43.651	36	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2288400	+		8556	21925	6976	6986							-0.0011083947092629387
EMRLEQVVE	9	Unmodified	_EMRLEQVVE_					0	0	0			REV__ENSG00000175985|ENST00000322564|PLEKHD1	REV__ENSG00000175985|ENST00000322564|PLEKHD1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	566.786981	1131.55941	-1.1674	-0.00066168	6.4108	0.0036336	5.2434	0.0029719	566.7901239800233	93.773	0.71393	91.811	91.526	92.24	-1.9617	-0.087955	0.0011178	NaN	43.651	32	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106200	+		8557	21925	6976	6986							-0.0011083947092629387
EMRLSRLI	8	Unmodified	_EMRLSRLI_					0	0	0			REV__ENST00000157600.7_2_3:8609452-8609641:+|nuORF	REV__ENST00000157600.7_2_3:8609452-8609641:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	509.7860107421875	2	509.297319	1016.58008	-0.34402	-0.00017521	0.91781	0.00046744	0.57379	0.00029223	509.29739131362027	97.976	1.2772	97.083	96.48	97.757	-0.89306					34	25	2	0	0	0	0.028476	1	8964	8964		56.721	26.217	1	20357	+		8558	23682	6977	6987	9577	9577					0.07245795699407154
EMRNCQNKPC	10	Unmodified	_EMRNCQNKPC_					0	0	0		ENSG00000143341|ENST00000271588|HMCN1;nc|ENSG00000143341|Q96RW7-2|HMCN1	ENSG00000143341|ENST00000271588|HMCN1	ENSG00000143341|ENST00000271588|HMCN1	MULTI-MSMS	OvCa9_classI_Rep3	3	611.7603149414062	2	611.759917	1221.50528	2.8507	0.0017439	-3.8432	-0.0023511	-0.99256	-0.00060721	611.7574111785548	123.55	1.0326	122.52	122.2	123.24	-1.0377					32	19	2	0	0	0	0.59703	1	9548	9548		42.396	9.5837	1	55340			8559	5038	6978	6988	9578	9578					-0.09661078165800063
EMRQMFVQ	8	Unmodified	_EMRQMFVQ_					0	0	0		ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6	ENSG00000125354|ENST00000394610|SEPTIN6	ENSG00000125354|ENST00000394610|SEPTIN6	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.29931640625	2	534.751887	1067.48922	2.0364	0.001089	3.4033	0.0018199	5.4396	0.0029089	534.753477049452	82.11	0.62711	82.11	81.895	82.522	0					38	14	4	0	0	0	0.028476	1	8477	8477		25.45	1.2474	1	2188300			8560	3701	6979	6989	9579	9579					-0.04182416340381678
EMRRKLLL	8	Unmodified	_EMRRKLLL_					0	0	0			REV__ENST00000460547.6_1_6:43483667-43483721:-|nuORF	REV__ENST00000460547.6_1_6:43483667-43483721:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.262451171875	2	529.828786	1057.64302	2.0456	0.0010838	-3.1603	-0.0016744	-1.1147	-0.00059062	529.8271202746035	85.717	0.84846	85.717	85.422	86.271	0					58	20	4	0	0	0	0.028476	1	9090	9090		31.955	0	1	2521400	+		8561	26086	6980	6990	9580	9580					0.11650361487454575
EMRRRETP	8	Unmodified	_EMRRRETP_					0	0	0		ENST00000362065.8_1_15:31233785-31233851:+|nuORF	ENST00000362065.8_1_15:31233785-31233851:+|nuORF	ENST00000362065.8_1_15:31233785-31233851:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.8230590820312	2	537.777282	1073.54001	-1.7077	-0.00091837	0.58983	0.0003172	-1.1179	-0.00060117	537.7775544360278	120.58	0.51434	119.23	119.03	119.55	-1.3456					15	9	2	0	0	0	0.028476	1	11339	11339		29.15	0	1	38004			8562	10813	6981	6991	9581	9581					0.006182490288438203
EMSHPRGIV	9	Unmodified	_EMSHPRGIV_					0	0	0		ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.Y2986Sfs*28|1|0.8|ENSG00000168702|chr2:140495631-140495643|TGTAAGTCCCGTA/-|frameshift_variant;LRP1B|p.R686Gfs*5|1|0.06|ENSG00000168702|chr2:141015830-141015830|G/-|frameshift_variant;LRP1B|p.F2011Yfs*4|1|0.04|ENSG00000168702|chr2:140702545-140702546|-/T|frameshift_variant;LRP1B|p.F2011Tfs*5|1|0.04|ENSG00000168702|chr2:140702546-140702547|-/AGGT|frameshift_variant;LRP1B|p.S2029Qfs*7|1|0.23|ENSG00000168702|chr2:140702493-140702493|G/-|frameshift_variant	ENSG00000168702|ENST00000389484|LRP1B	ENSG00000168702|ENST00000389484|LRP1B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.7418823242188	2	513.263476	1024.5124	-0.82909	-0.00042554	-2.7255	-0.0013989	-3.5546	-0.0018245	513.2619642930404	69.464	1.714	65.982	64.974	66.688	-3.4812					70	34	4	0	0	0	0.027453	1	5158	5158		64.207	19.676	1	264700			8563	6934	6982	6992	9582	9582					0.0011234576857077627
EMSHPRGIV	9	Unmodified	_EMSHPRGIV_					0	0	0		ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.Y2986Sfs*28|1|0.8|ENSG00000168702|chr2:140495631-140495643|TGTAAGTCCCGTA/-|frameshift_variant;LRP1B|p.R686Gfs*5|1|0.06|ENSG00000168702|chr2:141015830-141015830|G/-|frameshift_variant;LRP1B|p.F2011Yfs*4|1|0.04|ENSG00000168702|chr2:140702545-140702546|-/T|frameshift_variant;LRP1B|p.F2011Tfs*5|1|0.04|ENSG00000168702|chr2:140702546-140702547|-/AGGT|frameshift_variant;LRP1B|p.S2029Qfs*7|1|0.23|ENSG00000168702|chr2:140702493-140702493|G/-|frameshift_variant	ENSG00000168702|ENST00000389484|LRP1B	ENSG00000168702|ENST00000389484|LRP1B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	513.263476	1024.5124	-0.94969	-0.00048744	-2.4394	-0.0012521	-3.3891	-0.0017395	513.2620436224939	68.594	1.0903	65.974	65.425	66.515	-2.6203	-0.004306	0.0002136	NaN	64.207	53	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68784			8564	6934	6982	6992							0.0011234576857077627
EMSLNKRSI	9	Unmodified	_EMSLNKRSI_					0	0	0			REV__ENSG00000149050|ENST00000278314|ZNF214	REV__ENSG00000149050|ENST00000278314|ZNF214	MULTI-MSMS	OvCa99_classI_Rep5	1	539.2915649414062	2	539.289691	1076.56483	1.3191	0.00071137	1.7789	0.00095935	3.098	0.0016707	539.290641318669	109.35	1.2808	109.35	108.71	110	0					68	28	4	0	0	0	0.22961	1	12391	12391		71.296	2.5089	1	1397000	+		8565	20139	6983	6993	9583	9583					0.029608841115532414
EMSVVPRLVQ	10	Unmodified	_EMSVVPRLVQ_					0	0	0			REV__chr16:28830790-28832205|105|14.49|0.3|5.59|+|0|ATXN2L,ATXN2L|1	REV__chr16:28830790-28832205|105|14.49|0.3|5.59|+|0|ATXN2L,ATXN2L|1	MULTI-MSMS	OvCa9_classI_Rep2	2	579.3228149414062	2	579.320991	1156.62743	2.6185	0.0015169	0.60301	0.00034934	3.2215	0.0018663	579.3212562959395	26.202	0.67894	23.493	23.343	24.022	-2.7097					37	15	3	0	0	0	0.7759	1	333	333		21.96	1.013	1	118080	+		8566	15929	6984	6994	9584	9584					0.05538030179741327
EMTGEWWFK	9	Unmodified	_EMTGEWWFK_					0	0	0			REV__ENST00000479375.6_1_9:130556974-130569527:+|nuORF	REV__ENST00000479375.6_1_9:130556974-130569527:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	606.2730102539062	2	607.270967	1212.52738	-0.58551	-0.00035557	-1.47	-0.00089269	-2.0555	-0.0012483	607.7719393085574	40.264	0.14917	37.554	37.452	37.601	-2.7097					4	2	2	0	0	0	0.027462	1	2023	2023		23.042	6.5693	1	5673.7	+		8567	26435	6985	6995	9585	9585					-0.07038207154096199
EMTKDTPCL	9	Unmodified	_EMTKDTPCL_					0	0	0			REV__ENST00000463516.5_1_7:45009010-45014805:-|nuORF	REV__ENST00000463516.5_1_7:45009010-45014805:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.27783203125	2	519.235735	1036.45692	2.3406	0.0012153	-3.4851	-0.0018096	-1.1446	-0.00059431	519.2339098262389	98.976	0.47151	98.976	98.764	99.236	0					18	11	2	0	0	0	0.027448	1	10934	10934		44.117	8.4985	1	452770	+		8568	19376	6986	6996	9586	9586					-0.05985248534079801
EMTLSFIGIL	10	Unmodified	_EMTLSFIGIL_					0	0	0			REV__tr|A0A553SFA3|A0A553SFA3_NIACISugarporterfamilyMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_08500PE=3SV=1	REV__tr|A0A553SFA3|A0A553SFA3_NIACISugarporterfamilyMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_08500PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	562.3090209960938	2	562.307018	1122.59948	0.74232	0.00041741	2.2646	0.0012734	3.0069	0.0016908	562.3082366051352	111.6	2.8604	111.46	110.14	113	-0.13961					133	57	4	0	0	0	0.45225	1	10540	10540		60.972	0	1	604240	+		8569	29556	6987	6997	9587	9587					0.04308707199652417
EMTRYRIS	8	Unmodified	_EMTRYRIS_					0	0	0			REV__ENST00000486882.5_1_1:79093429-79094083:+|nuORF	REV__ENST00000486882.5_1_1:79093429-79094083:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.8220825195312	2	528.268758	1054.52296	-0.98698	-0.00052139	-3.1478	-0.0016629	-4.1348	-0.0021843	528.2660013114139	74.734	0.34021	71.503	71.24	71.58	-3.2308					10	6	2	0	0	0	0.028476	1	5852	5852		47.916	5.5195	1	17195	+		8570	26592	6988	6998	9588	9588					-0.002116715769716393
EMVEDDALN	9	Unmodified	_EMVEDDALN_					0	0	0			REV__tr|A0A553SQL5|A0A553SQL5_NIACITypeIIsecretionsystemproteinGspFdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07875PE=4SV=1	REV__tr|A0A553SQL5|A0A553SQL5_NIACITypeIIsecretionsystemproteinGspFdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07875PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.3251342773438	2	518.218597	1034.42264	-0.40077	-0.00020769	-0.73474	-0.00038075	-1.1355	-0.00058844	518.2174923735475	105.53	0.64761	103.52	103.25	103.9	-2.0161					13	12	2	0	0	0	0.027462	1	9621	9621		27.882	0	1	9391.7	+		8571	30641	6989	6999	9589	9589					-0.09319373421294586
EMVELFLR	8	Unmodified	_EMVELFLR_					0	0	0		nc|ENSG00000008710|P98161-2|PKD1;nc|ENSG00000008710|P98161-3|PKD1;ENSG00000008710|ENST00000262304|PKD1	nc|ENSG00000008710|P98161-2|PKD1	nc|ENSG00000008710|P98161-2|PKD1	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.8026123046875	2	518.778428	1035.5423	0.35811	0.00018578	-3.8535	-0.0019991	-3.4954	-0.0018134	518.7763611520732	108.3	0.59398	108.07	107.88	108.47	-0.22498					16	11	2	0	0	0	0.028476	1	10159	10159		45.952	3.4775	1	31160			8572	924	6990	7000	9590	9590					0.025952847139024016
EMVEMAQKL	9	Unmodified	_EMVEMAQKL_					0	0	0		ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4;nc|ENSG00000140463|Q96RK4-3|BBS4;ENST00000568535.1_1_15:73028121-73029372:+|nuORF	ENSG00000140463|ENST00000268057|BBS4	ENSG00000140463|ENST00000268057|BBS4	MULTI-MSMS	OvCa9_classI_Rep4_	4	539.7677612304688	2	539.767203	1077.51985	-0.41001	-0.00022131	3.1257	0.0016871	2.7157	0.0014658	539.7686667585657	122.58	1.14	121.22	120.96	122.1	-1.3666					35	22	2	0	0	0	0.21231	1	11578	11578		74.255	13.283	1	64983			8573	4842	6991	7001	9591	9591					-0.015806827459982742
EMVEMAQKL	9	Unmodified	_EMVEMAQKL_					0	0	0		ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4;nc|ENSG00000140463|Q96RK4-3|BBS4;ENST00000568535.1_1_15:73028121-73029372:+|nuORF	ENSG00000140463|ENST00000268057|BBS4	ENSG00000140463|ENST00000268057|BBS4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	539.767203	1077.51985	-1.2789	-0.00069033	4.0209	0.0021704	2.742	0.00148	539.7692257299869	121.66	1.1874	121.46	121.2	122.39	-0.19719	0.16987	0.0012573	NaN	74.255	34	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40639			8574	4842	6991	7001							-0.015806827459982742
EMVEMAQKL	9	Unmodified	_EMVEMAQKL_					0	0	0		ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4;nc|ENSG00000140463|Q96RK4-3|BBS4;ENST00000568535.1_1_15:73028121-73029372:+|nuORF	ENSG00000140463|ENST00000268057|BBS4	ENSG00000140463|ENST00000268057|BBS4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	539.767203	1077.51985	2.062	0.001113	1.0235	0.00055245	3.0855	0.0016655	539.767634244934	122.22	1.0497	121.19	121.01	122.06	-1.0286	-0.096981	-0.0019785	NaN	74.255	32	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61277			8575	4842	6991	7001							-0.015806827459982742
EMVEMESEPM	10	Unmodified	_EMVEMESEPM_					0	0	0			REV__ENSG00000242498|ENST00000357484|ARPIN	REV__ENSG00000242498|ENST00000357484|ARPIN	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.518310546875	3	404.492475	1210.4556	0.98453	0.00039823	0.38396	0.00015531	1.3685	0.00055354	404.4926674610822	35.436	0.18139	35.436	35.293	35.475	0					5	3	2	0	0	0	0.02717	1	1780	1780		12.207	0	1	13831	+		8576	23457	6992	7002	9592	9592					-0.14121250685116138
EMVESRIDQ	9	Unmodified	_EMVESRIDQ_					0	0	0			REV__nc|ENSG00000166928|Q96JA4-2|MS4A14	REV__nc|ENSG00000166928|Q96JA4-2|MS4A14	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.7620239257812	2	553.760963	1105.50737	-0.5787	-0.00032046	0.25419	0.00014076	-0.32451	-0.0001797	553.7609951664953	80.881	1.3184	78.17	77.81	79.128	-2.7106					67	26	4	0	0	0	0.40818	1	6641	6641		51.193	1.7511	1	930780	+		8577	21238	6993	7003	9593	9593					-0.04116002884688896
EMVGSMVGVY	10	Unmodified	_EMVGSMVGVY_					0	0	0		ENSG00000115268|ENST00000592588|RPS15	ENSG00000115268|ENST00000592588|RPS15	ENSG00000115268|ENST00000592588|RPS15	MULTI-MSMS	OvCa9_classI_Rep2	2	536.2459716796875	2	536.246103	1070.47765	-0.69524	-0.00037282	0.15637	8.3852E-05	-0.53888	-0.00028897	536.246148469639	113.89	3.7057	113.77	113.37	117.07	-0.11777					126	74	2	0	0	0	0.49049	2	10858	10845;10858		55.504	0	1	608760			8578	3078	6994	7004	9594;9595	9595					-0.054766581543617576
EMVGSMVGVY	10	Unmodified	_EMVGSMVGVY_					0	0	0		ENSG00000115268|ENST00000592588|RPS15	ENSG00000115268|ENST00000592588|RPS15	ENSG00000115268|ENST00000592588|RPS15	MULTI-MSMS	OvCa9_classI_Rep3	3	536.2461547851562	2	536.246103	1070.47765	0.97643	0.00052361	-1.5969	-0.00085634	-0.62049	-0.00033273	536.2452380983605	114.48	3.218	113.43	113.05	116.27	-1.055					122	64	2	0	0	0	0.50656	1	8503	8503		53.351	3.3269	1	980200			8579	3078	6994	7004	9596	9596					-0.054766581543617576
EMVIEEMIE	9	Unmodified	_EMVIEEMIE_					0	0	0			REV__nc|ENSG00000130713|Q13868-3|EXOSC2	REV__nc|ENSG00000130713|Q13868-3|EXOSC2	MULTI-MSMS	OvCa9_classI_Rep3	3	561.759033203125	2	561.756501	1121.49845	1.0872	0.00061075	2.4116	0.0013547	3.4988	0.0019655	561.757717613742	63.682	3.3714	60.689	60	63.371	-2.9933					120	66	3	0	0	0	0.63422	1	2385	2385		27.882	3.6795	1	89773	+		8580	18962	6995	7005	9597	9597					-0.05744112565366777
EMVIKIPIG	9	Unmodified	_EMVIKIPIG_					0	0	0			REV__ENST00000260604.8_1_2:55870335-55906871:-|nuORF	REV__ENST00000260604.8_1_2:55870335-55906871:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.82537841796875	2	500.298996	998.583439	-0.28895	-0.00014456	3.1271	0.0015645	2.8382	0.0014199	500.30019527762994	61.75	0.75776	58.293	58.057	58.815	-3.4577					23	15	3	0	0	0	0.027462	1	4311	4311		42.396	31.531	1	71105	+		8581	23930	6996	7006	9598	9598					0.08409045753410282
EMVNMNMKT	9	Unmodified	_EMVNMNMKT_					0	0	0			REV__ENSG00000100154|ENST00000397906|TTC28	REV__ENSG00000100154|ENST00000397906|TTC28	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.8150634765625	2	549.243037	1096.47152	0.17548	9.638E-05	-3.2153	-0.001766	-3.0398	-0.0016696	549.7433364832843	67.024	0.49442	63.533	63.344	63.839	-3.4902					11	9	2	0	0	0	0.02741	1	4907	4907		42.396	0	1	16129	+		8582	17374	6997	7007	9599	9599					-0.0728549965754155
EMVRIGILV	9	Unmodified	_EMVRIGILV_					0	0	0		L1PA15_dup4761|chrX:56137796-56140776:+|1.2704796762244717|0.2808252408673861|2.18|428.0|192|3|anti-sense	L1PA15_dup4761|chrX:56137796-56140776:+|1.2704796762244717|0.2808252408673861|2.18|428.0|192|3|anti-sense	L1PA15_dup4761|chrX:56137796-56140776:+|1.2704796762244717|0.2808252408673861|2.18|428.0|192|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.7944946289062	2	515.309895	1028.60524	-1.5914	-0.00082006	-1.9549	-0.0010074	-3.5462	-0.0018274	515.308734418218	118.94	0.82767	117.6	117.36	118.19	-1.3444					30	15	3	0	0	0	0.027462	1	11186	11186		35.618	12.576	1	81712			8583	14664	6998	7008	9600	9600					0.09207850501957182
EMVTEKGSI	9	Unmodified	_EMVTEKGSI_					0	0	0		tr|A0A7D6VS43|A0A7D6VS43_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04670PE=4SV=1	tr|A0A7D6VS43|A0A7D6VS43_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04670PE=4SV=1	tr|A0A7D6VS43|A0A7D6VS43_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04670PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	497.2489929199219	2	497.2497	992.484847	-0.58232	-0.00028956	0.53877	0.0002679	-0.043554	-2.1657E-05	497.249899106239	68.377	0.86723	68.377	68.152	69.019	0					42	20	3	0	0	0	0.10363	1	6457	6457		96.19	11.275	1	2939000			8584	34985	6999	7009	9601	9601					-0.011696022822889063
EMWPSLKSI	9	Unmodified	_EMWPSLKSI_					0	0	0			REV__ENST00000414744.2_1_17:26926168-26926465:+|nuORF	REV__ENST00000414744.2_1_17:26926168-26926465:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.31591796875	2	545.78371	1089.55287	1.5345	0.00083748	-3.3895	-0.0018499	-1.855	-0.0010124	545.7816058586724	87.479	0.58051	87.479	87.257	87.838	0					25	13	3	0	0	0	0.027295	1	9252	9252		96.19	27.404	1	977660	+		8585	25525	7000	7010	9602	9602					0.011672673683506218
EMYAKWLSK	9	Unmodified	_EMYAKWLSK_					0	0	0			REV__ENSG00000146281|ENST00000275072|PM20D2	REV__ENSG00000146281|ENST00000275072|PM20D2	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.8125	2	578.296985	1154.57942	1.8528	0.0010715	-3.2823	-0.0018982	-1.4296	-0.0008267	578.2950051725885	84.955	0.91228	84.955	84.672	85.585	0					53	21	4	0	0	0	0.02744	1	8869	8869		44.377	0	1	2040200	+		8586	20005	7001	7011	9603	9603					0.008309562596650721
EMYFSIGAH	9	Unmodified	_EMYFSIGAH_					0	0	0		tr|A0A553ST63|A0A553ST63_NIACIAldose1-epimerasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_04285PE=4SV=1	tr|A0A553ST63|A0A553ST63_NIACIAldose1-epimerasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_04285PE=4SV=1	tr|A0A553ST63|A0A553ST63_NIACIAldose1-epimerasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_04285PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.3150024414062	2	527.73676	1053.45897	0.18256	9.6345E-05	0.98732	0.00052105	1.1699	0.00061739	527.7374245755095	125.42	0.64378	125.18	124.86	125.5	-0.2359					16	12	2	0	0	0	0.027462	1	12181	12181		47.916	7.343	1	26393			8587	34461	7002	7012	9604	9604					-0.06562451733930175
EMYIKKKE	8	Unmodified	_EMYIKKKE_					0	0	0			REV__nc|ENSG00000000005|Q9H2S6-2|TNMD	REV__nc|ENSG00000000005|Q9H2S6-2|TNMD	MULTI-MSMS	OvCa9_classI_Rep3	3	534.79150390625	2	534.791535	1067.56852	3.0352	0.0016232	-3.1332	-0.0016756	-0.09798	-5.2399E-05	534.7896759823677	56.343	2.6096	53.193	52.451	55.06	-3.1504					179	83	3	0	0	0	0.73766	1	1636	1636		32.812	1.2826	1	87189	+		8588	16356	7003	7013	9605	9605					0.037435538853969774
EMYRAITFL	9	Unmodified	_EMYRAITFL_					0	0	0			REV__ENSG00000130449|ENST00000252744|ZSWIM6	REV__ENSG00000130449|ENST00000252744|ZSWIM6	MULTI-MSMS	OvCa9_classI_Rep4_	4	572.2972412109375	2	572.296985	1142.57942	-1.8105	-0.0010362	1.5645	0.00089537	-0.24602	-0.0001408	572.2977165974768	107.23	1.8554	105.35	105.01	106.87	-1.8785					88	36	4	0	0	0	0.16562	1	9798	9798		82.241	18.033	1	550410	+		8589	18946	7004	7014	9606	9606					0.013829562596811229
EMYYGEQLIS	10	Oxidation (M)	_EM(Oxidation (M))YYGEQLIS_		EM(1)YYGEQLIS		EM(49)YYGEQLIS	0	0	1		tr|A0A553SK02|A0A553SK02_NIACIIS3familytransposaseOS=NialliacirculansOX=1397GN=CEQ21_17840PE=4SV=1;tr|A0A553SPG0|A0A553SPG0_NIACIIS3familytransposaseOS=NialliacirculansOX=1397GN=CEQ21_26315PE=4SV=1	tr|A0A553SK02|A0A553SK02_NIACIIS3familytransposaseOS=NialliacirculansOX=1397GN=CEQ21_17840PE=4SV=1	tr|A0A553SK02|A0A553SK02_NIACIIS3familytransposaseOS=NialliacirculansOX=1397GN=CEQ21_17840PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	624.7689819335938	2	624.776279	1247.538	-5.9707	-0.0037304	-4.4765	-0.0027968	-10.447	-0.0065272	624.7733208461376	159.52	0.65544	158.19	157.91	158.56	-1.3316					27	12	3	0	0	0	0.53885	1	13801	13801		49.442	11.63	1	38923			8590	33562	7005	7015	9607	9607		737			-0.07586269290300152
ENAAKKKN	8	Unmodified	_ENAAKKKN_					0	0	0		tr|A0A553SLB2|A0A553SLB2_NIACIsmall,acid-solublesporeproteinLOS=NialliacirculansOX=1397GN=sspLPE=4SV=1	tr|A0A553SLB2|A0A553SLB2_NIACIsmall,acid-solublesporeproteinLOS=NialliacirculansOX=1397GN=sspLPE=4SV=1	tr|A0A553SLB2|A0A553SLB2_NIACIsmall,acid-solublesporeproteinLOS=NialliacirculansOX=1397GN=sspLPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	451.75653076171875	2	451.756341	901.498129	-0.54928	-0.00024814	0.55924	0.00025264	0.0099542	4.4969E-06	451.7564531475436	28.117	0.69705	28.117	27.891	28.588	0					25	13	3	0	0	0	0.73205	1	890	890		35.618	2.1027	1	272090			8591	33707	7006	7016	9608	9608					0.043440166119466994
ENAAMNKLI	9	Unmodified	_ENAAMNKLI_					0	0	0			REV__tr|A0A7D7AAS9|A0A7D7AAS9_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12615PE=4SV=1	REV__tr|A0A7D7AAS9|A0A7D7AAS9_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12615PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.7930603027344	2	502.265684	1002.51682	-0.60647	-0.00030461	-2.898	-0.0014556	-3.5044	-0.0017602	502.26410988353473	102.29	1.1552	100.09	99.624	100.78	-2.1994					28	21	2	0	0	0	0.027418	1	9244	9244		40.778	0	1	13497	+		8592	32670	7007	7017	9609	9609					0.015658101914937106
ENADFHKL	8	Unmodified	_ENADFHKL_					0	0	0			REV__tr|A0A7D6VT99|A0A7D6VT99_9CLOTCotSfamilysporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16390PE=4SV=1	REV__tr|A0A7D6VT99|A0A7D6VT99_9CLOTCotSfamilysporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16390PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.3147277832031	2	487.240524	972.466495	-0.53189	-0.00025916	3.5936	0.001751	3.0617	0.0014918	487.24224954118534	51.22	1.2072	48.047	47.771	48.978	-3.1734					56	23	3	0	0	0	0.028476	1	2967	2967		30.504	1.3541	1	266170	+		8593	31585	7008	7018	9610	9610					-0.020839761420006653
ENADLVECLL	10	Unmodified	_ENADLVECLL_					0	0	0		tr|A0A7D6VNL2|A0A7D6VNL2_9CLOTPseudouridinesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18360PE=3SV=1	tr|A0A7D6VNL2|A0A7D6VNL2_9CLOTPseudouridinesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18360PE=3SV=1	tr|A0A7D6VNL2|A0A7D6VNL2_9CLOTPseudouridinesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18360PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	559.7984619140625	2	559.773539	1117.53253	-0.12	-6.7174E-05	2.3587	0.0013203	2.2387	0.0012531	559.7747208219599	80.102	0.55183	77.762	77.309	77.861	-2.3399					12	10	2	0	0	0	0.026656	1	4377	4377		65.465	22.601	1	10084			8594	34712	7009	7019	9611	9611					-0.021539480821274992
ENAIRIVDL	9	Unmodified	_ENAIRIVDL_					0	0	0		ENSG00000221926|ENST00000649191|TRIM16;nc|ENSG00000291110|Q309B1|TRIM16L;nc|ENSG00000221926|O95361-2|TRIM16	ENSG00000221926|ENST00000649191|TRIM16	ENSG00000221926|ENST00000649191|TRIM16	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.3353881835938	2	521.798206	1041.58186	2.2037	0.0011499	-2.727	-0.0014229	-0.52325	-0.00027303	521.7980640609528	100.98	0.50291	100.98	100.69	101.19	0					16	11	2	0	0	0	0.027462	1	11233	11233		30.318	0	1	178760			8595	9236	7010	7020	9612	9612					0.0627312798899311
ENANVINKA	9	Unmodified	_ENANVINKA_					0	0	0			REV__tr|A0A7D6VSD5|A0A7D6VSD5_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06040PE=4SV=1	REV__tr|A0A7D6VSD5|A0A7D6VSD5_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06040PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.8074035644531	2	486.759081	971.503609	0.23054	0.00011222	-3.367	-0.0016389	-3.1365	-0.0015267	486.7573126169908	56.864	0.86523	53.519	53.324	54.189	-3.3449					20	16	2	0	0	0	0.027462	1	3691	3691		40.778	3.6191	1	43593	+		8596	31489	7011	7021	9613	9613					0.016716954037519827
ENAPTKETNNI	11	Unmodified	_ENAPTKETNNI_					0	0	0		nc|ENSG00000052126|Q9HAU0-8|PLEKHA5;nc|ENSG00000052126|Q9HAU0|PLEKHA5;nc|ENSG00000052126|Q9HAU0-2|PLEKHA5;nc|ENSG00000052126|Q9HAU0-4|PLEKHA5;ENSG00000052126|ENST00000429027|PLEKHA5;ENST00000510738.2_1_12:19413894-19459437:+|nuORF;nc|ENSG00000052126|Q9HAU0-3|PLEKHA5;nc|ENSG00000052126|Q9HAU0-5|PLEKHA5	nc|ENSG00000052126|Q9HAU0-8|PLEKHA5	nc|ENSG00000052126|Q9HAU0-8|PLEKHA5	MULTI-SECPEP	OvCa99_classI_Rep5	1	615.8214111328125	2	615.801674	1229.58879	1.1686	0.00071965	-3.7137	-0.0022869	-2.545	-0.0015672	615.7987511139377	145.84	1.0908	145.84	145.43	146.52	0					64	21	6	0	0	0	0.025487	1	17117	17117		38.754	0	1	671200			8597	1192	7012	7022	9614	9614					-0.016816039210880263
ENAQHLKLV	9	Unmodified	_ENAQHLKLV_					0	0	0		ENSG00000097096|ENST00000341460|SYDE2;ENST00000234668.6_1_1:85647735-85666124:-|nuORF;nc|ENSG00000097096|Q5VT97-2|SYDE2	ENSG00000097096|ENST00000341460|SYDE2;ENST00000234668.6_1_1:85647735-85666124:-|nuORF	ENSG00000097096|ENST00000341460|SYDE2	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.2380981445312	2	526.298373	1050.58219	0.061814	3.2532E-05	-0.61955	-0.00032607	-0.55774	-0.00029354	526.2979897364959	46.046	0.83184	46.046	45.844	46.676	0					23	18	2	0	0	0	0.027462	1	3308	3308		34.173	5.023	1	330440			8598	1957;9738	7013	7023	9615	9615					0.05892547708845086
ENARKKLI	8	Unmodified	_ENARKKLI_					0	0	0		tr|A0A7D6ZGB9|A0A7D6ZGB9_9CLOTPocRligand-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17685PE=4SV=1	tr|A0A7D6ZGB9|A0A7D6ZGB9_9CLOTPocRligand-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17685PE=4SV=1	tr|A0A7D6ZGB9|A0A7D6ZGB9_9CLOTPocRligand-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17685PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	486.3056945800781	2	486.303458	970.592364	0.60247	0.00029298	2.7724	0.0013482	3.3749	0.0016412	486.3047947264386	124.97	2.7662	124.74	124.37	127.13	-0.2359					156	55	5	0	0	0	0.745	1	12251	12251		29.15	0	1	3410600			8599	35539	7014	7024	9616	9616					0.10589155434104214
ENARPGQLI	9	Unmodified	_ENARPGQLI_					0	0	0		ENSG00000040731|ENST00000264463|CDH10	ENSG00000040731|ENST00000264463|CDH10	ENSG00000040731|ENST00000264463|CDH10	MULTI-SECPEP	OvCa9_classI_Rep2	2	499.28631591796875	2	499.274898	996.535243	0.049395	2.4662E-05	-4.3199	-0.0021568	-4.2705	-0.0021321	499.27266860732504	79.745	0.86198	78.05	77.557	78.419	-1.6951					24	16	2	0	0	0	0.027185	1	6661	6661		71.877	5.4482	1	22475			8600	1115	7015	7025	9617	9617					0.03683688157718734
ENATAILL	8	Unmodified	_ENATAILL_					0	0	0			REV__nc|ENSG00000110497|Q9C0C7-6|AMBRA1	REV__nc|ENSG00000110497|Q9C0C7-6|AMBRA1	MULTI-SECPEP	OvCa9_classI_Rep3	3	421.7535095214844	2	422.742368	843.470183	-0.42303	-0.00017883	0.56052	0.00023696	0.13749	5.8123E-05	422.7425845647568	86.672	0.8055	84.495	84.23	85.036	-2.1768					25	15	2	0	0	0	0.028476	1	5185	5185		31.955	15.482	1	57383	+		8601	17988	7016	7026	9618	9618					0.04218693631867154
ENCISCEM	8	Unmodified	_ENCISCEM_					0	0	0			REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B	REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.25262451171875	2	464.664089	927.313624	-0.26263	-0.00012203	2.9127	0.0013534	2.65	0.0012314	464.66436032483097	57.913	0.3047	54.568	54.393	54.698	-3.3449					8	5	2	0	0	0	0.028476	1	3769	3769		20.947	3.582	1	8045.8	+		8602	17199	7017	7027	9619	9619					-0.15293998916786222
ENCSELYR	8	Unmodified	_ENCSELYR_					0	0	0			REV__ENSG00000132326|ENST00000254657|PER2	REV__ENSG00000132326|ENST00000254657|PER2	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.76324462890625	2	507.221474	1012.42839	-0.64561	-0.00032747	-2.1961	-0.0011139	-2.8417	-0.0014414	507.222092572632	115.09	0.78999	114.98	114.65	115.44	-0.11777					20	15	2	0	0	0	0.028476	1	11003	11003		45.972	1.8554	1	11993	+		8603	19068	7018	7028	9620	9620					-0.07732230118983807
ENCVISRSV	9	Unmodified	_ENCVISRSV_					0	0	0		tr|A0A7D6ZHU9|A0A7D6ZHU9_9CLOTGlucose-1-phosphateadenylyltransferasesubunitGlgDOS=ClostridiumintestinaleOX=36845GN=glgDPE=3SV=1	tr|A0A7D6ZHU9|A0A7D6ZHU9_9CLOTGlucose-1-phosphateadenylyltransferasesubunitGlgDOS=ClostridiumintestinaleOX=36845GN=glgDPE=3SV=1	tr|A0A7D6ZHU9|A0A7D6ZHU9_9CLOTGlucose-1-phosphateadenylyltransferasesubunitGlgDOS=ClostridiumintestinaleOX=36845GN=glgDPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	503.7502746582031	2	503.752941	1005.49133	-0.47395	-0.00023875	-3.1399	-0.0015817	-3.6139	-0.0018205	503.7512732081583	49.198	1.0492	49.198	48.807	49.856	0					70	23	5	0	0	0	0.37135	1	3691	3691		54.776	6.8168	1	8950300			8604	35591	7019	7029	9621	9621					-0.011196643309290266
ENDCRINQR	9	Unmodified	_ENDCRINQR_					0	0	0		ENSG00000105429|ENST00000251268|MEGF8;nc|ENSG00000105429|Q7Z7M0-2|MEGF8	ENSG00000105429|ENST00000251268|MEGF8	ENSG00000105429|ENST00000251268|MEGF8	MULTI-SECPEP	OvCa9_classI_Rep2	2	574.3084106445312	2	574.267278	1146.52	-0.035692	-2.0497E-05	0.20341	0.00011681	0.16772	9.6315E-05	574.2661696497344	126.65	0.34631	126.42	126.34	126.69	-0.2359					9	6	2	0	0	0	0.027462	1	12375	12375		45.972	4.5456	1	8194.8			8605	2459	7020	7030	9622	9622					-0.047395467017850024
ENDDMQQEH	9	Unmodified	_ENDDMQQEH_					0	0	0			REV__nc|ENSG00000005889|P17010-2|ZFX	REV__nc|ENSG00000005889|P17010-2|ZFX	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.2863159179688	2	573.211834	1144.40912	-0.3377	-0.00019358	-2.258	-0.0012943	-2.5957	-0.0014879	573.7145488972791	30.161	0.19988	30.161	30.036	30.236	0					5	3	2	0	0	0	0.027462	1	1126	1126		14.865	0	1	22269	+		8606	16406	7021	7031	9623	9623					-0.15731231200538787
ENDEPIEIPS	10	Unmodified	_ENDEPIEIPS_					0	0	0		ENST00000456601.1_1_2:239140521-239140857:+|nuORF;TARDBP|p.R197Qfs*8|1|0.09|ENSG00000120948|chr1:11020474-11020475|-/A|frameshift_variant;TARDBP|p.C198Lfs*10|1|0.08|ENSG00000120948|chr1:11020475-11020476|-/GCTATGCTAT|frameshift_variant;TARDBP|p.N267*|1|0.1|ENSG00000120948|chr1:11022207-11022208|-/T|frameshift_variant;ENSG00000120948|ENST00000240185|TARDBP	ENST00000456601.1_1_2:239140521-239140857:+|nuORF	ENST00000456601.1_1_2:239140521-239140857:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	571.807373046875	2	571.764226	1141.5139	-0.99329	-0.00056793	0.53306	0.00030478	-0.46023	-0.00026314	571.7634165616385	90.189	0.25505	88.108	88.004	88.259	-2.0805					5	4	2	0	0	0	0.026867	1	5578	5578		35.152	17.684	1	4381.7			8607	3463	7022	7032	9624	9624					-0.05119786452337394
ENDLQWGIV	9	Unmodified	_ENDLQWGIV_					0	0	0			REV__tr|A0A553SMF7|A0A553SMF7_NIACIBeta-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_22515PE=3SV=1	REV__tr|A0A553SMF7|A0A553SMF7_NIACIBeta-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_22515PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	537.2723999023438	2	537.266739	1072.51892	2.6082	0.0014013	3.1803	0.0017087	5.7886	0.00311	537.2684896382216	88.872	4.5522	88.872	88.003	92.555	0					290	110	5	0	0	0	0.56189	1	9385	9385		36.447	2.2742	1	72679000	+		8608	30324	7023	7033	9625	9625					-0.014434377990482972
ENDMKKLVA	9	Unmodified	_ENDMKKLVA_					0	0	0		nc|ENSG00000162779|Q5T1B0-2|AXDND1;ENST00000461179.2_1_1:179339175-179437601:+|nuORF;ENSG00000162779|ENST00000367618|AXDND1	nc|ENSG00000162779|Q5T1B0-2|AXDND1	nc|ENSG00000162779|Q5T1B0-2|AXDND1	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.2767333984375	2	524.278792	1046.54303	-1.4064	-0.00073734	-2.5211	-0.0013218	-3.9275	-0.0020591	524.2773318859194	41.29	2.6423	38.309	37.763	40.405	-2.9804					91	50	4	0	0	0	0.19758	1	1881	1881		76.774	2.5191	1	1482900			8609	6234	7024	7034	9626	9626					0.021620793629836044
ENDQKRIRAM	10	Unmodified	_ENDQKRIRAM_					0	0	0		nc|ENSG00000161973|Q96M95-2|CCDC42;ENSG00000161973|ENST00000293845|CCDC42	nc|ENSG00000161973|Q96M95-2|CCDC42	nc|ENSG00000161973|Q96M95-2|CCDC42	MULTI-SECPEP	OvCa99_classI_Rep5	1	421.2525329589844	3	420.887428	1259.64045	-0.0092973	-3.9131E-06	2.4472	0.00103	2.4379	0.0010261	420.88847662289976	44.611	1.0585	44.611	44.396	45.454	0					30	23	2	0	0	0	0.027006	1	3091	3091		24.232	7.702	1	113230			8610	6147	7025	7035	9627	9627					0.02101861291816931
ENDSKEDESL	10	Unmodified	_ENDSKEDESL_					0	0	0			REV__nc|ENSG00000144645|Q9BXB5-2|OSBPL10	REV__nc|ENSG00000144645|Q9BXB5-2|OSBPL10	MULTI-MSMS	OvCa9_classI_Rep2	2	583.247802734375	2	583.246397	1164.47824	0.6749	0.00039363	3.6554	0.002132	4.3303	0.0025256	583.2484035489165	130.41	1.8783	130.18	129.81	131.69	-0.22696					86	37	3	0	0	0	0.44431	1	12837	12837		62.107	1.9892	1	516500	+		8611	19924	7026	7036	9628	9628					-0.0974186869998448
ENDTWSQL	8	Unmodified	_ENDTWSQL_					0	0	0			REV__ENSG00000163512|ENST00000479665|AZI2	REV__ENSG00000163512|ENST00000479665|AZI2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.7823181152344	2	496.719621	991.42469	-1.1369	-0.00056474	-2.6202	-0.0013015	-3.7571	-0.0018662	496.71819298115173	44.814	0.87221	41.775	41.514	42.386	-3.0385					24	16	2	0	0	0	0.028476	1	2228	2228		32.812	0	1	52437	+		8612	20844	7027	7037	9629	9629					-0.07136576621178392
ENDTWSQL	8	Unmodified	_ENDTWSQL_					0	0	0			REV__ENSG00000163512|ENST00000479665|AZI2	REV__ENSG00000163512|ENST00000479665|AZI2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	496.719621	991.42469	0.17682	8.7831E-05	-4.4128	-0.0021919	-4.236	-0.0021041	496.71760866281176	44.763	0.3473	42.053	41.901	42.248	-2.7097	0.13919	-0.001224	NaN	30.318	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9433.7	+		8613	20844	7027	7037							-0.07136576621178392
ENDVELLTK	9	Unmodified	_ENDVELLTK_					0	0	0		ENSG00000137460|ENST00000511601|FHDC1	ENSG00000137460|ENST00000511601|FHDC1	ENSG00000137460|ENST00000511601|FHDC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.32861328125	2	530.779679	1059.5448	2.3473	0.0012459	-1.3132	-0.00069701	1.0341	0.00054889	530.7813179022485	80.18	0.33061	80.18	79.944	80.274	0					13	7	3	0	0	0	0.027462	1	8202	8202		36.447	5.9431	1	138440			8614	4584	7028	7038	9630	9630					0.01741411652574243
ENDVVEKL	8	Unmodified	_ENDVVEKL_					0	0	0		ENSG00000106266|ENST00000222990|SNX8	ENSG00000106266|ENST00000222990|SNX8	ENSG00000106266|ENST00000222990|SNX8	MULTI-MSMS	OvCa99_classI_Rep5	1	473.24981689453125	2	473.248015	944.481476	-0.0018241	-8.6324E-07	0.48544	0.00022973	0.48362	0.00022887	473.2480353966381	51.23	1.3082	51.23	50.73	52.038	0					53	30	3	0	0	0	0.17036	1	3930	3930		129.68	5.0884	1	1702500			8615	2538	7029	7039	9631	9631					0.00701470935348425
ENEAKLKAQV	10	Unmodified	_ENEAKLKAQV_					0	0	0		tr|A0A553SSI2|A0A553SSI2_NIACICopperoxidaseOS=NialliacirculansOX=1397GN=CEQ21_03155PE=4SV=1	tr|A0A553SSI2|A0A553SSI2_NIACICopperoxidaseOS=NialliacirculansOX=1397GN=CEQ21_03155PE=4SV=1	tr|A0A553SSI2|A0A553SSI2_NIACICopperoxidaseOS=NialliacirculansOX=1397GN=CEQ21_03155PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.8074951171875	2	565.31422	1128.61389	0.79882	0.00045159	-0.71946	-0.00040672	0.079365	4.4866E-05	565.314782460585	90.934	0.9192	88.359	88.11	89.029	-2.575					26	17	3	0	0	0	0.026714	1	7862	7862		51.193	19.558	1	261510			8616	34377	7030	7040	9632	9632					0.054724956721202034
ENEALHKMI	9	Unmodified	_ENEALHKMI_					0	0	0		nc|ENSG00000090686|Q86UV5-5|USP48;nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48	nc|ENSG00000090686|Q86UV5-5|USP48	nc|ENSG00000090686|Q86UV5-5|USP48	MULTI-MSMS	OvCa99_classI_Rep5	1	542.78369140625	2	542.776416	1083.53828	1.5871	0.00086145	0.7499	0.00040703	2.337	0.0012685	542.7766722586902	110.02	0.98852	110.02	109.68	110.67	0					48	21	4	0	0	0	0.11471	1	12468	12468		93.195	0	1	3287100			8617	1846	7031	7041	9633	9633					-0.00014804779766564025
ENEARSEDPP	10	Unmodified	_ENEARSEDPP_					0	0	0		ENST00000572085.5_1_15:43707600-43785241:-|nuORF;nc|ENSG00000067369|Q12888|TP53BP1;nc|ENSG00000067369|Q12888-3|TP53BP1;ENSG00000067369|ENST00000382044|TP53BP1;ENST00000411772.5_2_15:43699583-43738985:-|nuORF	ENST00000572085.5_1_15:43707600-43785241:-|nuORF	ENST00000572085.5_1_15:43707600-43785241:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	571.3109130859375	2	572.249274	1142.484	-0.043012	-2.4613E-05	2.9001	0.0016596	2.857	0.0016349	572.2508795688216	115.95	0.99143	114.58	114.2	115.19	-1.3645					35	19	3	0	0	0	0.026994	1	10878	10878		13.454	7.5329	1	53199			8618	1375	7032	7042	9634	9634					-0.08154725397662332
ENEASVRFEY	10	Unmodified	_ENEASVRFEY_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	622.3184814453125	2	622.283117	1242.55168	1.455	0.00090543	-1.1012	-0.00068526	0.35381	0.00022017	622.2835041660857	135.82	0.14148	135.82	135.73	135.88	0					4	2	2	0	0	0	0.026968	1	15833	15833		36.447	17.343	1	26264	+		8619	28942;32737	7033	7043	9635	9635					-0.05989275466822619
ENEDEAKAR	9	Unmodified	_ENEDEAKAR_					0	0	0			REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1	REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.7775268554688	2	531.246535	1060.47852	1.2838	0.00068204	-2.5508	-0.0013551	-1.2669	-0.00067304	531.2447293427157	143.67	0.44585	143.67	143.41	143.86	0					14	8	2	0	0	0	0.027462	1	16799	16799		9.7057	0	1	20948	+		8620	21383	7034	7044	9636	9636					-0.049304041894629336
ENEDTNKII	9	Unmodified	_ENEDTNKII_					0	0	0			REV__tr|A0A553SL32|A0A553SL32_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_19885PE=4SV=1	REV__tr|A0A553SL32|A0A553SL32_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_19885PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.826171875	2	538.266936	1074.51932	-1.4412	-0.00077573	-1.4102	-0.00075908	-2.8514	-0.0015348	538.7675276764365	93.543	0.29581	91.036	90.763	91.059	-2.5072					6	5	2	0	0	0	0.027447	1	8131	8131		39.253	1.4413	1	16953	+		8621	30179	7035	7045	9637	9637					-0.014960628698418077
ENEKIIREL	9	Unmodified	_ENEKIIREL_					0	0	0			REV__tr|A0A7D6VWM2|A0A7D6VWM2_9CLOTATP-dependent6-phosphofructokinaseOS=ClostridiumintestinaleOX=36845GN=pfkAPE=3SV=1	REV__tr|A0A7D6VWM2|A0A7D6VWM2_9CLOTATP-dependent6-phosphofructokinaseOS=ClostridiumintestinaleOX=36845GN=pfkAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.3409423828125	2	572.322045	1142.62954	0.017944	1.027E-05	1.8201	0.0010417	1.8381	0.001052	572.3231885710483	62.893	0.3587	62.893	62.741	63.1	0					13	8	2	0	0	0	0.027432	1	5636	5636		67.494	5.3863	1	605910	+		8622	31752	7036	7046	9638	9638					0.06392782189186619
ENEKKFNQL	9	Unmodified	_ENEKKFNQL_					0	0	0			REV__nc|ENSG00000163808|Q9NS87-2|KIF15	REV__nc|ENSG00000163808|Q9NS87-2|KIF15	MSMS	OvCa99_classI_Rep5	1	575.2998657226562	2	575.29857	1148.58259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.46	1	132.46	131.96	132.96	0								0	0	0	0.16812	1	15394	15394		56.434	1.7114	1		+		8623	20892	7037	7047	9639	9639					0.014239226380595937
ENEKLIVSL	9	Unmodified	_ENEKLIVSL_					0	0	0			REV__tr|A0A7D6VXQ0|A0A7D6VXQ0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12825PE=4SV=1	REV__tr|A0A7D6VXQ0|A0A7D6VXQ0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12825PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	522.8017578125	2	522.800414	1043.58628	1.6641	0.00086998	0.68634	0.00035882	2.3504	0.0012288	522.8006218149252	100.37	0.66454	100.37	100.07	100.73	0					44	15	4	0	0	0	0.26076	1	11117	11117		67.494	5.3863	1	4235000	+		8624	31785	7038	7048	9640	9640					0.06622592411895312
ENEKLPLEY	9	Unmodified	_ENEKLPLEY_					0	0	0			REV__tr|A0A553SQ47|A0A553SQ47_NIACIDEAD/DEAHboxhelicaseOS=NialliacirculansOX=1397GN=CEQ21_20270PE=4SV=1	REV__tr|A0A553SQ47|A0A553SQ47_NIACIDEAD/DEAHboxhelicaseOS=NialliacirculansOX=1397GN=CEQ21_20270PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.833251953125	2	567.787504	1133.56045	1.8801	0.0010675	-2.6098	-0.0014818	-0.72964	-0.00041428	567.7860833875231	92.485	0.46078	92.485	92.216	92.677	0					12	9	2	0	0	0	0.027072	1	10008	10008		101.6	8.4575	1	214640	+		8625	30607	7039	7049	9641	9641					-0.0009830183039412077
ENEKQFVAK	9	Unmodified	_ENEKQFVAK_					0	0	0			REV__nc|ENSG00000133710|Q9NQ38-2|SPINK5	REV__nc|ENSG00000133710|Q9NQ38-2|SPINK5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.3154907226562	2	546.787838	1091.56112	-0.97103	-0.00053095	0.16331	8.9297E-05	-0.80772	-0.00044165	546.7877235878365	73.884	1.2437	70.653	70.434	71.678	-3.2308					51	25	4	0	0	0	0.027309	1	5786	5786		70.816	0	1	282660	+		8626	19155	7040	7050	9642	9642					0.01900537609321873
ENELDELDP	9	Unmodified	_ENELDELDP_					0	0	0		ENSG00000136842|ENST00000259365|TMOD1	ENSG00000136842|ENST00000259365|TMOD1	ENSG00000136842|ENST00000259365|TMOD1	MULTI-SECPEP	OvCa9_classI_Rep3	3	537.2960815429688	2	537.235301	1072.45605	0.31786	0.00017076	-0.44001	-0.00023639	-0.12216	-6.5627E-05	537.2346573445607	91.166	0.25227	89.142	89.029	89.281	-2.0241					8	4	3	0	0	0	0.027462	1	5699	5699		40.778	9.2484	1	6929.4			8627	4522	7041	7051	9643	9643					-0.07728048377771302
ENELDRAAF	9	Unmodified	_ENELDRAAF_					0	0	0		tr|A0A7D6VWN1|A0A7D6VWN1_9CLOTDicarboxylate/aminoacid:cationsymporterOS=ClostridiumintestinaleOX=36845GN=HZF06_04800PE=4SV=1	tr|A0A7D6VWN1|A0A7D6VWN1_9CLOTDicarboxylate/aminoacid:cationsymporterOS=ClostridiumintestinaleOX=36845GN=HZF06_04800PE=4SV=1	tr|A0A7D6VWN1|A0A7D6VWN1_9CLOTDicarboxylate/aminoacid:cationsymporterOS=ClostridiumintestinaleOX=36845GN=HZF06_04800PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	533.3472290039062	2	532.753995	1063.49344	-0.61935	-0.00032996	2.7218	0.0014501	2.1025	0.0011201	532.7553596453637	92.72	0.4735	91.552	91.182	91.655	-1.168					13	8	2	0	0	0	0.02741	1	8230	8230		42.396	0	1	7509.4			8628	35256	7042	7052	9644	9644					-0.03576912321477721
ENELEEVKI	9	Unmodified	_ENELEEVKI_					0	0	0			REV__PPFIBP2|p.G427Pfs*25|1|0.22|ENSG00000166387|chr11:7639774-7639789|GGGAAGCTTTCAGGAG/-|frameshift_variant	REV__PPFIBP2|p.G427Pfs*25|1|0.22|ENSG00000166387|chr11:7639774-7639789|GGGAAGCTTTCAGGAG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	551.7875366210938	2	551.784961	1101.55537	0.84505	0.00046629	-1.2467	-0.0006879	-0.40162	-0.00022161	551.7842579769714	111.38	1.137	110.28	110.05	111.19	-1.1038					31	22	2	0	0	0	0.34132	1	8095	8095		58.23	1.7961	1	151870	+		8629	21185	7043	7053	9645	9645					0.008653943070157766
ENELEEVKI	9	Unmodified	_ENELEEVKI_					0	0	0			REV__PPFIBP2|p.G427Pfs*25|1|0.22|ENSG00000166387|chr11:7639774-7639789|GGGAAGCTTTCAGGAG/-|frameshift_variant	REV__PPFIBP2|p.G427Pfs*25|1|0.22|ENSG00000166387|chr11:7639774-7639789|GGGAAGCTTTCAGGAG/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	551.784961	1101.55537	0.79805	0.00044035	-1.2595	-0.00069496	-0.46142	-0.00025461	551.7842460733655	110.64	0.98814	110.49	110.18	111.17	-0.14799	0.10667	-8.6557E-06	NaN	58.23	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81796	+		8630	21185	7043	7053							0.008653943070157766
ENELNLKEL	9	Unmodified	_ENELNLKEL_					0	0	0			REV__tr|A0A7D6VTL2|A0A7D6VTL2_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11425PE=4SV=1	REV__tr|A0A7D6VTL2|A0A7D6VTL2_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11425PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.2955932617188	2	551.292953	1100.57135	-0.8456	-0.00046617	1.6224	0.00089441	0.77678	0.00042823	551.2936727801224	81.198	0.82931	78.487	78.347	79.176	-2.7106					37	16	3	0	0	0	0.030867	1	6670	6670		134.77	0.77216	1	400380	+		8631	31613	7044	7054	9646	9646					0.025091005438980574
ENELSAHDGRA	11	Unmodified	_ENELSAHDGRA_					0	0	0			REV__ENSG00000131378|ENST00000334133|RFTN1	REV__ENSG00000131378|ENST00000334133|RFTN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	599.3648681640625	2	599.77599	1197.53743	1.8514	0.0011104	4.2769	0.0025652	6.1284	0.0036756	599.778630468293	126.89	0.58157	126.89	126.56	127.14	0					23	12	3	0	0	0	0.025528	1	14711	14711		28.081	0	1	227910	+		8632	19008	7045	7055	9647	9647					-0.053439278951373126
ENELYWNN	8	Unmodified	_ENELYWNN_					0	0	0			REV__tr|A0A553STP6|A0A553STP6_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05500PE=4SV=1	REV__tr|A0A553STP6|A0A553STP6_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05500PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.812255859375	2	541.232896	1080.45124	-0.53277	-0.00028835	-1.7084	-0.00092467	-2.2412	-0.001213	541.2323771807997	75.517	1.1083	72.578	72.304	73.412	-2.9389					24	22	2	0	0	0	0.028476	1	5993	5993		30.504	10.022	1	68903	+		8633	30992	7046	7056	9648	9648					-0.08576887729850569
ENENVIDEP	9	Unmodified	_ENENVIDEP_					0	0	0		tr|A0A7D6ZXQ2|A0A7D6ZXQ2_9CLOTMechanosensitiveionchannelfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23930PE=3SV=1	tr|A0A7D6ZXQ2|A0A7D6ZXQ2_9CLOTMechanosensitiveionchannelfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23930PE=3SV=1	tr|A0A7D6ZXQ2|A0A7D6ZXQ2_9CLOTMechanosensitiveionchannelfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23930PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.7822875976562	2	529.735468	1057.45638	-1.7535	-0.0009289	1.5803	0.00083714	-0.17322	-9.1763E-05	529.7360261774653	101.25	1.3382	100.48	99.724	101.06	-0.76401					41	26	2	0	0	0	0.027418	1	9211	9211		62.107	0	1	17994			8634	35887	7047	7057	9649	9649					-0.07004628657887224
ENEPQSKLTP	10	Unmodified	_ENEPQSKLTP_					0	0	0		ENST00000343938.8_1_1:1260457-1262298:+|nuORF	ENST00000343938.8_1_1:1260457-1262298:+|nuORF	ENST00000343938.8_1_1:1260457-1262298:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.265380859375	2	571.788035	1141.56152	0.72636	0.00041532	1.2895	0.00073731	2.0158	0.0011526	571.7890349525887	81.463	0.69913	81.463	81.037	81.736	0					29	16	3	0	0	0	0.026674	1	8347	8347		65.465	6.6834	1	618710			8635	10604	7048	7058	9650	9650					-0.0036008746149036597
ENEQQPDHTN	10	Unmodified	_ENEQQPDHTN_					0	0	0		ENSG00000089775|ENST00000608382|ZBTB25	ENSG00000089775|ENST00000608382|ZBTB25	ENSG00000089775|ENST00000608382|ZBTB25	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.5182800292969	3	404.502296	1210.48506	1.0234	0.00041398	-2.8133	-0.001138	-1.7898	-0.00072398	404.5007711393052	35.407	0.32032	35.407	35.293	35.614	0					9	6	2	0	0	0	0.026942	1	1804	1804		25.068	0	1	20123			8636	1828	7049	7059	9651	9651					-0.11176511028747882
ENESGRLPI	9	Unmodified	_ENESGRLPI_					0	0	0			REV__nc|ENSG00000186635|Q96P48-3|ARAP1	REV__nc|ENSG00000186635|Q96P48-3|ARAP1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7662658691406	2	507.764363	1013.51417	0.43978	0.0002233	3.6377	0.0018471	4.0775	0.0020704	507.76605298589374	131.19	1.6749	130.96	130.26	131.93	-0.22696					79	33	3	0	0	0	0.59983	1	12942	12942		31.955	1.4512	1	124560	+		8637	22603	7050	7060	9652	9652					0.00795678058204885
ENESVKIAF	9	Unmodified	_ENESVKIAF_					0	0	0		nc|ENSG00000134759|Q6IA86-7|ELP2;nc|ENSG00000134759|Q6IA86-2|ELP2;nc|ENSG00000134759|Q6IA86-3|ELP2;nc|ENSG00000134759|Q6IA86-5|ELP2;ENSG00000134759|ENST00000358232|ELP2;nc|ENSG00000134759|Q6IA86-6|ELP2;ENST00000536373.5_1_18:33718798-33725056:+|nuORF;nc|ENSG00000134759|Q6IA86-4|ELP2	nc|ENSG00000134759|Q6IA86-7|ELP2	nc|ENSG00000134759|Q6IA86-7|ELP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.7504272460938	2	518.769114	1035.52368	-1.2322	-0.00063924	1.291	0.00066976	0.058826	3.0517E-05	518.7694476725487	48.589	0.57049	45.482	45.348	45.918	-3.1077					19	10	3	0	0	0	0.027462	1	2684	2684		37.159	19.794	1	45480			8638	4324	7051	7061	9653	9653					0.007334463437246086
ENETLHKEI	9	Unmodified	_ENETLHKEI_					0	0	0		nc|ENSG00000187164|A0MZ66-2|SHTN1;nc|ENSG00000187164|A0MZ66-8|SHTN1;nc|ENSG00000187164|A0MZ66-4|SHTN1;nc|ENSG00000187164|A0MZ66-5|SHTN1;nc|ENSG00000187164|A0MZ66-6|SHTN1;ENSG00000187164|ENST00000355371|SHTN1;nc|ENSG00000187164|A0MZ66-3|SHTN1	nc|ENSG00000187164|A0MZ66-2|SHTN1	nc|ENSG00000187164|A0MZ66-2|SHTN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	556.78564453125	2	556.782753	1111.55095	1.7625	0.0009813	2.0814	0.0011589	3.8439	0.0021402	556.7836021653013	84.876	1.2036	82.23	81.838	83.042	-2.6463					73	24	5	0	0	0	0.1804	1	7138	7138		79.713	0.26157	1	380570			8639	8391	7052	7062	9654	9654					-0.00036070115902475663
ENETSMLLL	9	Unmodified	_ENETSMLLL_					0	0	0			REV__nc|ENSG00000118513|P10242-8|MYB	REV__nc|ENSG00000118513|P10242-8|MYB	MULTI-MSMS	OvCa9_classI_Rep3	3	525.2605590820312	2	525.262807	1048.51106	-1.4268	-0.00074946	-1.7638	-0.00092645	-3.1906	-0.0016759	525.2617261128773	135.8	1.2792	134.69	134.36	135.64	-1.1076					47	25	3	0	0	0	0.24951	1	11001	11001		68.787	2.9837	1	79711	+		8640	18403	7053	7063	9655	9655					-0.011253331108036946
ENEYQIELM	9	Unmodified	_ENEYQIELM_					0	0	0			REV__nc|ENSG00000153827|Q14669-4|TRIP12	REV__nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.3306274414062	2	584.763171	1167.51179	1.8623	0.001089	3.8468	0.0022494	5.7091	0.0033385	584.7656687859546	95.403	0.28992	95.403	95.161	95.451	0					12	6	3	0	0	0	0.027462	1	10408	10408		34.173	0	1	804940	+		8641	20349	7054	7064	9656	9656					-0.06526538461775999
ENFGILLLNI	10	Unmodified	_ENFGILLLNI_					0	0	0		tr|A0A7D6VQX2|A0A7D6VQX2_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00115PE=4SV=1	tr|A0A7D6VQX2|A0A7D6VQX2_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00115PE=4SV=1	tr|A0A7D6VQX2|A0A7D6VQX2_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00115PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	572.8060913085938	2	573.331882	1144.64921	-1.1196	-0.00064188	-2.3237	-0.0013323	-3.4433	-0.0019741	573.3306908739048	81.18	0.54002	78.469	78.298	78.838	-2.7106					17	10	2	0	0	0	0.026656	1	6659	6659		56.434	0	1	97045			8642	34875	7055	7065	9657	9657					0.08267158199964797
ENFIQPNR	8	Unmodified	_ENFIQPNR_					0	0	0		tr|A0A7D6W103|A0A7D6W103_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01855PE=4SV=1	tr|A0A7D6W103|A0A7D6W103_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01855PE=4SV=1	tr|A0A7D6W103|A0A7D6W103_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01855PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.3012390136719	2	509.259248	1016.50394	-0.49176	-0.00025043	-0.062085	-3.1617E-05	-0.55384	-0.00028205	509.2587865206367	38.217	0.13953	38.217	38.114	38.254	0					6	2	3	0	0	0	0.028476	1	2146	2146		23.042	5.6775	1	34568			8643	35396	7056	7066	9658	9658					-0.0036488487637598155
ENFIVLKITT	10	Unmodified	_ENFIVLKITT_					0	0	0			REV__ENSG00000164880|ENST00000404767|INTS1	REV__ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3431396484375	2	589.344989	1176.67542	-3.0463	-0.0017953	-0.38122	-0.00022467	-3.4276	-0.00202	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.75313	1	14986	14986		24.519	0.99649	1	272220	+		8644	21030	7057	7067	9659	9659					0.09415427371413898
ENFKKTFKRIL	11	Unmodified	_ENFKKTFKRIL_					0	0	0		ENSG00000196639|ENST00000431010|HRH1	ENSG00000196639|ENST00000431010|HRH1	ENSG00000196639|ENST00000431010|HRH1	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.75250244140625	3	475.285516	1422.83472	-0.11746	-5.5829E-05	0.63899	0.0003037	0.52153	0.00024787	475.28609296828813	41.069	0.75775	41.069	40.573	41.33	0					30	16	3	0	0	0	0.026204	1	2498	2498		16.53	4.097	1	133680			8645	8638	7058	7068	9660	9660					0.1402156071940226
ENFPKCRQH	9	Unmodified	_ENFPKCRQH_					0	0	0		CACNA1G|p.H1541P|1|0.04|ENSG00000006283|chr17:50607936-50607936|A/C|missense_variant	CACNA1G|p.H1541P|1|0.04|ENSG00000006283|chr17:50607936-50607936|A/C|missense_variant	CACNA1G|p.H1541P|1|0.04|ENSG00000006283|chr17:50607936-50607936|A/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	579.2896728515625	2	579.777282	1157.54001	-0.70981	-0.00041153	0.57909	0.00033574	-0.13072	-7.579E-05	579.7776516065599	102.23	0.78996	100.03	99.78	100.57	-2.1994					20	14	2	0	0	0	0.027441	1	9227	9227		49.442	15.269	1	26191			8646	172	7059	7069	9661	9661					-0.03245750971200323
ENFPKCRQH	9	Unmodified	_ENFPKCRQH_					0	0	0		CACNA1G|p.H1541P|1|0.04|ENSG00000006283|chr17:50607936-50607936|A/C|missense_variant	CACNA1G|p.H1541P|1|0.04|ENSG00000006283|chr17:50607936-50607936|A/C|missense_variant	CACNA1G|p.H1541P|1|0.04|ENSG00000006283|chr17:50607936-50607936|A/C|missense_variant	MULTI-MATCH	OvCa99_classI_Rep5	1		2	579.777282	1157.54001	1.699	0.00098505	0.0068486	3.9706E-06	1.7059	0.00098902	579.7768467356849	100.13	0.38411	100.13	99.896	100.28	0	0.068685	-0.00067859	NaN	32.812	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	289320			8647	172	7059	7069							-0.03245750971200323
ENFPKLKNI	9	Unmodified	_ENFPKLKNI_					0	0	0			REV__tr|A0A7D6VXV0|A0A7D6VXV0_9CLOTDNAtopoisomeraseOS=ClostridiumintestinaleOX=36845GN=HZF06_13385PE=3SV=1	REV__tr|A0A7D6VXV0|A0A7D6VXV0_9CLOTDNAtopoisomeraseOS=ClostridiumintestinaleOX=36845GN=HZF06_13385PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.2818603515625	2	551.816399	1101.61824	0.53646	0.00029603	-2.0517	-0.0011322	-1.5152	-0.00083613	552.3159029336829	111.24	0.57877	109.66	109.35	109.93	-1.5781					16	10	2	0	0	0	0.027462	1	10275	10275		19.997	0	1	19248	+		8648	31791	7060	7070	9662	9662					0.07150004885693306
ENFREAIT	8	Unmodified	_ENFREAIT_					0	0	0			REV__tr|A0A553SLZ2|A0A553SLZ2_NIACITryptophansynthasealphachainOS=NialliacirculansOX=1397GN=trpAPE=3SV=1	REV__tr|A0A553SLZ2|A0A553SLZ2_NIACITryptophansynthasealphachainOS=NialliacirculansOX=1397GN=trpAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	489.2915344238281	2	490.245806	978.47706	0.053971	2.6459E-05	-0.024171	-1.185E-05	0.0298	1.4609E-05	490.24565321334114	59.599	1.4622	56.818	56.294	57.756	-2.7801					42	27	2	0	0	0	0.028476	1	4426	4426		56.721	15.943	1	38020	+		8649	30280	7061	7071	9663	9663					-0.013039934875905601
ENFSPTLID	9	Unmodified	_ENFSPTLID_					0	0	0		tr|A0A553SJP7|A0A553SJP7_NIACISaccharopinedehydrogenasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_17120PE=4SV=1	tr|A0A553SJP7|A0A553SJP7_NIACISaccharopinedehydrogenasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_17120PE=4SV=1	tr|A0A553SJP7|A0A553SJP7_NIACISaccharopinedehydrogenasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_17120PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.7940063476562	2	518.253297	1034.49204	1.6234	0.00084135	2.4102	0.0012491	4.0336	0.0020904	518.2539033315044	103.03	0.71705	103.03	102.55	103.26	0					31	16	3	0	0	0	0.027462	1	11512	11512		31.53	0	1	232960			8650	33526	7062	7072	9664	9664					-0.023825464102401384
ENFYEILN	8	Unmodified	_ENFYEILN_					0	0	0			REV__tr|A0A7D7A5B2|A0A7D7A5B2_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06525PE=4SV=1	REV__tr|A0A7D7A5B2|A0A7D7A5B2_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06525PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2755737304688	2	521.248015	1040.48148	-0.50207	-0.0002617	-3.553	-0.001852	-4.055	-0.0021137	521.2460566569237	72.903	0.38968	72.903	72.723	73.113	0					15	9	2	0	0	0	0.028476	1	7141	7141		16.473	0	1	259430	+		8651	32634	7063	7073	9665	9665					-0.037145290646549256
ENGAIPKTPV	10	Unmodified	_ENGAIPKTPV_					0	0	0		ENST00000464255.1_1_2:219265892-219269145:+|nuORF;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;ENST00000497677.5_1_2:219264813-219268311:+|nuORF	ENST00000464255.1_1_2:219265892-219269145:+|nuORF	ENST00000464255.1_1_2:219265892-219269145:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.824462890625	2	513.284931	1024.55531	-0.6369	-0.00032691	0.50374	0.00025856	-0.13316	-6.8349E-05	513.2851500996703	77.405	0.70766	75.053	74.838	75.546	-2.3527					21	13	4	0	0	0	0.026734	1	4101	4101		39.253	0	1	36002			8652	12245	7064	7074	9666	9666					0.044014390976599316
ENGANINQPD	10	Unmodified	_ENGANINQPD_					0	0	0		nc|ENSG00000058272|O14974-5|PPP1R12A;nc|ENSG00000058272|O14974-4|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A;ENSG00000058272|ENST00000450142|PPP1R12A	nc|ENSG00000058272|O14974-5|PPP1R12A	nc|ENSG00000058272|O14974-5|PPP1R12A	MULTI-SECPEP	OvCa9_classI_Rep2	2	535.813720703125	2	536.238709	1070.46287	-0.62108	-0.00033305	1.8006	0.00096553	1.1795	0.00063249	536.239694320131	44.489	0.69686	41.779	41.402	42.099	-2.7097					21	13	3	0	0	0	0.026849	1	2550	2550		25.574	7.2496	1	20753			8653	1243	7065	7075	9667	9667					-0.06954690706515976
ENGEQKKKL	9	Unmodified	_ENGEQKKKL_					0	0	0		ENST00000331334.4_1_14:96010780-96010885:+|nuORF	ENST00000331334.4_1_14:96010780-96010885:+|nuORF	ENST00000331334.4_1_14:96010780-96010885:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	537.3006591796875	2	537.301113	1072.58767	0.34296	0.00018427	-1.2115	-0.00065093	-0.86851	-0.00046665	537.3005010796675	46.046	0.70182	46.046	45.8	46.501	0					40	15	4	0	0	0	0.055627	1	3215	3215		115.49	0.59948	1	5401500			8654	10446	7066	7076	9668	9668					0.054282265006804664
ENGGTLTIKL	10	Unmodified	_ENGGTLTIKL_					0	0	0		tr|A0A553SPI2|A0A553SPI2_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26400PE=4SV=1	tr|A0A553SPI2|A0A553SPI2_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26400PE=4SV=1	tr|A0A553SPI2|A0A553SPI2_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26400PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.3184814453125	2	523.298039	1044.58152	-0.7688	-0.00040231	1.3061	0.00068348	0.53731	0.00028117	523.2982229508476	63.69	0.6346	63.69	63.376	64.011	0					24	15	2	0	0	0	0.027637	1	5714	5714		127.46	17.124	1	537810			8655	34049	7067	7077	9669	9669					0.061017082691250835
ENGILKKV	8	Unmodified	_ENGILKKV_					0	0	0		tr|A0A7D6ZYG4|A0A7D6ZYG4_9CLOTSelenium-dependentxanthinedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=xdhPE=3SV=1	tr|A0A7D6ZYG4|A0A7D6ZYG4_9CLOTSelenium-dependentxanthinedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=xdhPE=3SV=1	tr|A0A7D6ZYG4|A0A7D6ZYG4_9CLOTSelenium-dependentxanthinedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=xdhPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	451.25537109375	2	450.779285	899.544017	-0.97898	-0.00044131	0.72482	0.00032673	-0.25417	-0.00011457	450.7794930626125	63.944	0.52112	63.944	63.732	64.253	0					25	12	3	0	0	0	0.028476	1	5815	5815		16.473	0	1	1142800			8656	35918	7068	7078	9670	9670					0.09022661794188025
ENGIYYGTR	9	Unmodified	_ENGIYYGTR_					0	0	0		sp|P16846|UL23_HCMVATegumentproteinUL23OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL23PE=1SV=2;sp|F5HDM3|UL23_HCMVMTegumentproteinUL23OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL23PE=3SV=1	sp|P16846|UL23_HCMVATegumentproteinUL23OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL23PE=1SV=2	sp|P16846|UL23_HCMVATegumentproteinUL23OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL23PE=1SV=2	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.2944946289062	2	536.756538	1071.49852	-1.8078	-0.00097036	1.6684	0.00089555	-0.13938	-7.4812E-05	536.7587112745713	60.915	0.68909	58.145	57.712	58.402	-2.7702					13	12	2	0	0	0	0.027462	1	4503	4503		23.523	16.329	1	9630.2			8657	32864	7069	7079	9671	9671					-0.03436608458855517
ENGKFITFG	9	Unmodified	_ENGKFITFG_					0	0	0		tr|A0A553SPG2|A0A553SPG2_NIACIDUF3993domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26290PE=4SV=1	tr|A0A553SPG2|A0A553SPG2_NIACIDUF3993domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26290PE=4SV=1	tr|A0A553SPG2|A0A553SPG2_NIACIDUF3993domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26290PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.29583740234375	2	506.758549	1011.50255	-1.8734	-0.00094937	-0.83948	-0.00042541	-2.7129	-0.0013748	506.7578350034697	50.247	0.83142	47.106	46.871	47.702	-3.1416					19	15	2	0	0	0	0.027462	1	2872	2872		24.519	6.2571	1	42979			8658	34037	7070	7080	9672	9672					-0.002745189651363944
ENGKGHTKSKS	11	Unmodified	_ENGKGHTKSKS_					0	0	0		ENST00000414124.1_1_17:16520269-16520722:-|nuORF	ENST00000414124.1_1_17:16520269-16520722:-|nuORF	ENST00000414124.1_1_17:16520269-16520722:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.8034057617188	2	586.804551	1171.59455	-6.8597	-0.0040253	4.3667	0.0025624	-2.4931	-0.001463	586.8069299890403	160.36	3.1265	158.75	158.28	161.4	-1.61					144	76	3	0	0	0	0.7246	1	15871	15871		20.837	1.4772	1	162470			8659	11574	7071	7081	9673	9673					0.015615393812367984
ENGKGPWVT	9	Unmodified	_ENGKGPWVT_					0	0	0		ENST00000579983.1_1_17:16534952-16537956:-|nuORF;ENSG00000197566|ENST00000311331|ZNF624	ENST00000579983.1_1_17:16534952-16537956:-|nuORF	ENST00000579983.1_1_17:16534952-16537956:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	494.7953796386719	2	494.248349	986.482145	-1.0513	-0.00051962	1.0055	0.00049697	-0.045826	-2.2649E-05	494.2486973712968	96.376	1.5287	94.547	94.172	95.701	-1.8286					79	29	4	0	0	0	0.027462	1	6452	6452		19.997	0	1	620090			8660	8724	7072	7082	9674	9674					-0.011636896249456186
ENGLRDIL	8	Unmodified	_ENGLRDIL_					0	0	0		ENSG00000187522|ENST00000378372|HSPA14	ENSG00000187522|ENST00000378372|HSPA14	ENSG00000187522|ENST00000378372|HSPA14	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.7679443359375	2	465.256174	928.497795	-0.43451	-0.00020216	-2.4561	-0.0011427	-2.8906	-0.0013449	465.25658392265893	49.183	0.91668	49.183	48.851	49.768	0					27	20	2	0	0	0	0.028476	1	3644	3644		60.972	0	1	94869			8661	8408	7073	7083	9675	9675					0.03068596892092046
ENGNGFKGAY	10	Unmodified	_ENGNGFKGAY_					0	0	0			REV__tr|A0A553SQR4|A0A553SQR4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07150PE=4SV=1	REV__tr|A0A553SQR4|A0A553SQR4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07150PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.27001953125	2	528.740888	1055.46722	1.3073	0.00069124	2.0319	0.0010743	3.3392	0.0017656	528.7412014454767	109.97	0.76368	109.97	109.46	110.22	0					22	16	2	0	0	0	0.02661	1	12503	12503		58.782	5.4305	1	66086	+		8662	30656	7074	7084	9676	9676					-0.058291814929589236
ENGNGFKGAY	10	Unmodified	_ENGNGFKGAY_					0	0	0			REV__tr|A0A553SQR4|A0A553SQR4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07150PE=4SV=1	REV__tr|A0A553SQR4|A0A553SQR4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07150PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	528.740888	1055.46722	-0.40671	-0.00021505	4.8079	0.0025421	4.4012	0.0023271	529.245645172224	110.04	0.19771	109.87	109.71	109.91	-0.17237	-0.04984	0.0021421	NaN	49.442	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5126.8	+		8663	30656	7074	7084							-0.058291814929589236
ENGPNTQLA	9	Unmodified	_ENGPNTQLA_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.7752685546875	2	472.227613	942.440674	1.474	0.00069606	0.11213	5.2949E-05	1.5861	0.00074901	472.22777874563656	79.162	0.88384	79.162	78.625	79.509	0					28	21	2	0	0	0	0.027411	1	8047	8047		58.23	0	1	602870			8664	3744	7075	7085	9677	9677					-0.03284870384277383
ENGQYLDIY	9	Unmodified	_ENGQYLDIY_					0	0	0		ENSG00000172260|ENST00000357731|NEGR1;nc|ENSG00000172260|Q7Z3B1-2|NEGR1;ENST00000467479.1_1_1:72163664-72400987:-|nuORF	ENSG00000172260|ENST00000357731|NEGR1	ENSG00000172260|ENST00000357731|NEGR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.3255004882812	2	557.756204	1113.49785	-0.085845	-4.788E-05	-2.6498	-0.0014779	-2.7356	-0.0015258	557.754425004775	58.978	0.3438	58.978	58.812	59.156	0					15	8	2	0	0	0	0.027462	1	5063	5063		45.972	11.8	1	624010			8665	7284	7076	7086	9678	9678					-0.054354478985715104
ENGRFQSSL	9	Unmodified	_ENGRFQSSL_					0	0	0			REV__BRCA1|p.N1265Kfs*4|1|0.89|ENSG00000012048|chr17:43091736-43091737|-/TT|frameshift_variant	REV__BRCA1|p.N1265Kfs*4|1|0.89|ENSG00000012048|chr17:43091736-43091737|-/TT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.3328247070312	2	519.254163	1036.49377	-1.5841	-0.00082256	0.89359	0.000464	-0.69054	-0.00035856	519.2545537017813	72.529	1.216	69.133	68.52	69.736	-3.3961					43	24	3	0	0	0	0.027462	1	5548	5548		41.427	14.379	1	119100	+		8666	15709	7077	7087	9679	9679					-0.0230149260160033
ENGRFQSSL	9	Unmodified	_ENGRFQSSL_					0	0	0			REV__BRCA1|p.N1265Kfs*4|1|0.89|ENSG00000012048|chr17:43091736-43091737|-/TT|frameshift_variant	REV__BRCA1|p.N1265Kfs*4|1|0.89|ENSG00000012048|chr17:43091736-43091737|-/TT|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	519.254163	1036.49377	0.70182	0.00036442	-0.95821	-0.00049755	-0.25639	-0.00013313	519.2536559756405	71.773	0.52216	69.266	68.963	69.485	-2.5071	0.066566	-0.0016267	NaN	41.427	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22206	+		8667	15709	7077	7087							-0.0230149260160033
ENGWHITPL	9	Unmodified	_ENGWHITPL_					0	0	0			REV__ENSG00000065491|ENST00000373491|TBC1D22B	REV__ENSG00000065491|ENST00000373491|TBC1D22B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.28271484375	2	533.769448	1065.52434	-1.3293	-0.00070952	3.182	0.0016984	1.8527	0.00098891	533.7712178647831	65.408	0.8223	61.923	61.552	62.374	-3.4854					25	16	2	0	0	0	0.027462	1	4665	4665		40.778	3.6191	1	53297	+		8668	16795	7078	7088	9680	9680					-0.005797142165647529
ENGYKNIK	8	Unmodified	_ENGYKNIK_					0	0	0		tr|A0A7D7AB46|A0A7D7AB46_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13920PE=4SV=1	tr|A0A7D7AB46|A0A7D7AB46_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13920PE=4SV=1	tr|A0A7D7AB46|A0A7D7AB46_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13920PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.7945556640625	2	483.256174	964.497795	-0.37756	-0.00018246	0.38712	0.00018708	0.0095588	4.6193E-06	483.2561747233926	43.301	0.55142	43.301	43.1	43.651	0					16	12	2	0	0	0	0.028476	1	2851	2851		16.473	0	1	155710			8669	36214	7079	7089	9681	9681					0.014125968920893683
ENHAERDDL	9	Unmodified	_ENHAERDDL_					0	0	0			REV__ENST00000493388.5_1_6:30594710-30608409:+|nuORF	REV__ENST00000493388.5_1_6:30594710-30608409:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.8646850585938	2	549.744159	1097.47377	-0.63505	-0.00034912	3.9614	0.0021778	3.3264	0.0018287	549.7463008856331	55.319	0.65374	55.319	55.15	55.804	0					27	15	3	0	0	0	0.027462	1	4564	4564		23.523	4.4192	1	1209500	+		8670	19447	7080	7090	9682	9682					-0.0710728833223584
ENHDLDLVR	9	Unmodified	_ENHDLDLVR_					0	0	0			REV__nc|ENSG00000144749|Q96JA1-2|LRIG1	REV__nc|ENSG00000144749|Q96JA1-2|LRIG1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.7997436523438	2	555.780544	1109.54654	0.22157	0.00012314	-1.0158	-0.00056459	-0.79427	-0.00044144	555.7794604522456	62.444	0.49413	58.987	58.765	59.259	-3.4577					11	9	2	0	0	0	0.027433	1	4366	4366		45.972	0	1	23898	+		8671	19933	7081	7091	9683	9683					-0.0038553453880467714
ENHKIWKEIV	10	Unmodified	_ENHKIWKEIV_					0	0	0		nc|ENSG00000152270|Q13370-2|PDE3B;ENSG00000152270|ENST00000282096|PDE3B	nc|ENSG00000152270|Q13370-2|PDE3B	nc|ENSG00000152270|Q13370-2|PDE3B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	432.8752136230469	3	432.575067	1294.70337	0.60164	0.00026026	-3.3913	-0.001467	-2.7896	-0.0012067	432.5734699787938	20.547	0.35608	19.208	19.056	19.412	-1.3386					9	6	2	0	0	0	0.027142	1	70	70		20.837	5.504	1	12540			8672	5615	7082	7092	9684	9684					0.06780750351504139
ENHLFLVG	8	Unmodified	_ENHLFLVG_					0	0	0			REV__ENSG00000126790|ENST00000247194|L3HYPDH	REV__ENSG00000126790|ENST00000247194|L3HYPDH	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.27008056640625	2	464.747985	927.481417	-0.25834	-0.00012006	-4.2132	-0.0019581	-4.4715	-0.0020781	464.74590510007846	47.215	1.2646	44.143	43.86	45.125	-3.0724					39	24	2	0	0	0	0.028476	1	2493	2493		20.482	12.792	1	603130	+		8673	18796	7083	7093	9685	9685					0.014775157260146443
ENHLFLVG	8	Unmodified	_ENHLFLVG_					0	0	0			REV__ENSG00000126790|ENST00000247194|L3HYPDH	REV__ENSG00000126790|ENST00000247194|L3HYPDH	MULTI-MATCH	OvCa9_classI_Rep2	2		2	464.747985	927.481417	-0.58836	-0.00027344	-4.0164	-0.0018666	-4.6048	-0.0021401	464.74600107027067	47.075	0.99089	44.366	44.043	45.034	-2.7097	0.17116	6.8109E-05	NaN	8.2313	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93024	+		8674	18796	7083	7093							0.014775157260146443
ENHLKTRSE	9	Unmodified	_ENHLKTRSE_					0	0	0			REV__ENSG00000101191|ENST00000395343|DIDO1	REV__ENSG00000101191|ENST00000395343|DIDO1	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.35302734375	2	557.285994	1112.55744	-0.0098254	-5.4756E-06	-0.11179	-6.2299E-05	-0.12162	-6.7775E-05	557.2855971809213	40.754	0.35876	40.754	40.479	40.838	0					10	7	2	0	0	0	0.027461	1	2503	2503		40.778	6.6056	1	58947	+		8675	17477	7084	7094	9686	9686					0.0056586783548482344
ENIDIPKV	8	Unmodified	_ENIDIPKV_					0	0	0			REV__tr|A0A7D6VRU5|A0A7D6VRU5_9CLOTHemeresponseregulatorHssROS=ClostridiumintestinaleOX=36845GN=HZF06_07075PE=4SV=1	REV__tr|A0A7D6VRU5|A0A7D6VRU5_9CLOTHemeresponseregulatorHssROS=ClostridiumintestinaleOX=36845GN=HZF06_07075PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	463.8050537109375	2	464.260925	926.507297	-0.79316	-0.00036823	0.76568	0.00035548	-0.027477	-1.2756E-05	464.261171148653	69.061	1.1969	66.441	65.918	67.115	-2.6203					42	23	2	0	0	0	0.028476	1	5503	5503		34.173	1.3601	1	152230	+		8676	31446	7085	7095	9687	9687					0.04110365177609765
ENIDIQGKT	9	Unmodified	_ENIDIQGKT_					0	0	0		nc|ENSG00000169436|Q8NFW1-2|COL22A1;ENSG00000169436|ENST00000303045|COL22A1	nc|ENSG00000169436|Q8NFW1-2|COL22A1	nc|ENSG00000169436|Q8NFW1-2|COL22A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.81036376953125	2	509.264196	1016.51384	-0.40691	-0.00020723	-1.2305	-0.00062665	-1.6374	-0.00083388	509.26339375598184	55.473	0.23965	55.473	55.401	55.641	0					8	5	2	0	0	0	0.027462	1	4562	4562		33.922	0	1	300630			8677	7011	7086	7096	9688	9688					0.006242583383254896
ENIDPNVRI	9	Unmodified	_ENIDPNVRI_					0	0	0		tr|A0A553SQT4|A0A553SQT4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07265PE=4SV=1	tr|A0A553SQT4|A0A553SQT4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07265PE=4SV=1	tr|A0A553SQT4|A0A553SQT4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07265PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.2866821289062	2	535.285463	1068.55637	-1.8133	-0.00097063	1.5423	0.00082559	-0.27096	-0.00014504	535.2862573125623	53.892	1.2803	50.645	50.415	51.695	-3.2474					65	24	4	0	0	0	0.2422	1	3321	3321		69.628	0	1	638320			8678	34194	7087	7097	9689	9689					0.024836534665837462
ENIELINME	9	Unmodified	_ENIELINME_					0	0	0			REV__nc|ENSG00000219481|Q3BBV0|NBPF1;REV__ENSG00000270629|ENST00000619423|NBPF14	REV__nc|ENSG00000219481|Q3BBV0|NBPF1	MULTI-SECPEP	OvCa9_classI_Rep3	3	553.3154296875	2	552.765714	1103.51688	-0.0044465	-2.4578E-06	-3.0145	-0.0016663	-3.0189	-0.0016688	552.7638925452035	106.31	0.62617	105.04	104.75	105.37	-1.267					17	11	2	0	0	0	0.027438	1	7526	7526		47.96	0	1	14329	+		8679	23333;23605	7088	7098	9690	9690					-0.0307423459914844
ENIHLSCKV	9	Carbamidomethyl (C)	_ENIHLSC(Carbamidomethyl (C))KV_	ENIHLSC(1)KV		ENIHLSC(140)KV		0	1	0		ENST00000340473.7_1_13:45725837-45725942:+|nuORF	ENST00000340473.7_1_13:45725837-45725942:+|nuORF	ENST00000340473.7_1_13:45725837-45725942:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.2821655273438	2	550.281866	1098.54918	-1.0974	-0.00060389	-2.4778	-0.0013635	-3.5752	-0.0019674	550.2803988898792	95.705	1.4631	93.279	93.005	94.468	-2.4256					50	28	2	0	0	0	0.026923	1	8434	8434		138.83	6.0677	1	757920			8680	10559	7089	7099	9691	9691	108				0.0038459759448414843
ENIIIIKEPLG	11	Unmodified	_ENIIIIKEPLG_					0	0	0		tr|A0A7D6VQC6|A0A7D6VQC6_9CLOTImmA/IrrEfamilymetallo-endopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20150PE=4SV=1	tr|A0A7D6VQC6|A0A7D6VQC6_9CLOTImmA/IrrEfamilymetallo-endopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20150PE=4SV=1	tr|A0A7D6VQC6|A0A7D6VQC6_9CLOTImmA/IrrEfamilymetallo-endopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20150PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.86865234375	2	619.871371	1237.72819	-3.1194	-0.0019336	-0.12263	-7.6013E-05	-3.242	-0.0020096	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.68399	1	15180	15180		35.152	4.8343	1	806750			8681	34839	7090	7100	9692	9692					0.11883385434225602
ENIISMCLK	9	Unmodified	_ENIISMCLK_					0	0	0		tr|A0A553STJ6|A0A553STJ6_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04990PE=4SV=1	tr|A0A553STJ6|A0A553STJ6_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04990PE=4SV=1	tr|A0A553STJ6|A0A553STJ6_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04990PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.275146484375	2	525.769745	1049.52494	-1.475	-0.00077552	1.8075	0.00095033	0.33248	0.00017481	525.7705454906582	93.822	1.3717	91.861	91.526	92.898	-1.9617					50	26	3	0	0	0	0.027247	1	6120	6120		90.37	31.588	1	128910			8682	34497	7091	7101	9693	9693					0.0021562111660387018
ENIKDLQEI	9	Unmodified	_ENIKDLQEI_					0	0	0		tr|A0A7D7A3P4|A0A7D7A3P4_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22425PE=4SV=1	tr|A0A7D7A3P4|A0A7D7A3P4_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22425PE=4SV=1	tr|A0A7D7A3P4|A0A7D7A3P4_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22425PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	551.29443359375	2	551.292953	1100.57135	1.7921	0.00098795	1.1517	0.00063493	2.9438	0.0016229	551.2933605517647	78.606	0.90568	78.606	78.335	79.24	0					45	21	4	0	0	0	0.0097486	1	7979	7979		169.65	17.591	1	3345300			8683	36123	7092	7102	9694	9694					0.025091005438980574
ENIKDLQEI	9	Unmodified	_ENIKDLQEI_					0	0	0		tr|A0A7D7A3P4|A0A7D7A3P4_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22425PE=4SV=1	tr|A0A7D7A3P4|A0A7D7A3P4_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22425PE=4SV=1	tr|A0A7D7A3P4|A0A7D7A3P4_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22425PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	551.292953	1100.57135	0.92705	0.00051107	7.6317	0.0042073	8.5587	0.0047184	551.2965670836599	80.093	1.4441	78.398	78.124	79.568	-1.6951	-0.078871	0.0068415	NaN	169.65	61	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	290770			8684	36123	7092	7102							0.025091005438980574
ENIKDLQEI	9	Unmodified	_ENIKDLQEI_					0	0	0		tr|A0A7D7A3P4|A0A7D7A3P4_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22425PE=4SV=1	tr|A0A7D7A3P4|A0A7D7A3P4_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22425PE=4SV=1	tr|A0A7D7A3P4|A0A7D7A3P4_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22425PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	551.292953	1100.57135	-0.65254	-0.00035974	1.2298	0.000678	0.57729	0.00031826	551.2935857071908	80.737	1.174	78.415	78.234	79.408	-2.3226	-0.061826	-0.00021711	NaN	169.65	38	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	464850			8685	36123	7092	7102							0.025091005438980574
ENIKDLQEI	9	Unmodified	_ENIKDLQEI_					0	0	0		tr|A0A7D7A3P4|A0A7D7A3P4_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22425PE=4SV=1	tr|A0A7D7A3P4|A0A7D7A3P4_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22425PE=4SV=1	tr|A0A7D7A3P4|A0A7D7A3P4_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22425PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	551.292953	1100.57135	-0.8456	-0.00046617	1.6224	0.00089441	0.77678	0.00042823	551.2936727801224	81.198	0.82931	78.487	78.347	79.176	-2.7106	0.010966	0.00021571	NaN	169.65	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	400380			8686	36123	7092	7102							0.025091005438980574
ENIKHNEVF	9	Unmodified	_ENIKHNEVF_					0	0	0			REV__tr|A0A7D6VS35|A0A7D6VS35_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03420PE=4SV=1	REV__tr|A0A7D6VS35|A0A7D6VS35_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03420PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	565.7906494140625	2	565.285463	1128.55637	2.2527	0.0012734	3.1263	0.0017672	5.379	0.0030406	565.7874061552732	87.185	0.65613	87.185	86.972	87.628	0					25	15	2	0	0	0	0.44568	1	9235	9235		47.657	3.5405	1	908050	+		8687	31464	7093	7103	9695	9695					-0.002763465334282955
ENIKTIRW	8	Unmodified	_ENIKTIRW_					0	0	0			REV__nc|ENSG00000087053|Q13614-2|MTMR2	REV__nc|ENSG00000087053|Q13614-2|MTMR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.2471923828125	2	530.300916	1058.58728	-0.81327	-0.00043128	3.1163	0.0016526	2.3031	0.0012213	530.8023135829295	41.985	0.47726	41.985	41.809	42.286	0					15	10	2	0	0	0	0.028476	1	2684	2684		23.042	0	1	60720	+		8688	17154	7094	7104	9696	9696					0.06032851571490028
ENILLRAEE	9	Unmodified	_ENILLRAEE_					0	0	0		tr|A0A7D6VVS3|A0A7D6VVS3_9CLOTNitroreductasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01525PE=3SV=1	tr|A0A7D6VVS3|A0A7D6VVS3_9CLOTNitroreductasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01525PE=3SV=1	tr|A0A7D6VVS3|A0A7D6VVS3_9CLOTNitroreductasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01525PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	543.794921875	2	543.793121	1085.57169	0.23161	0.00012595	2.9045	0.0015795	3.1361	0.0017054	543.7946646282795	107.74	3.3384	106.52	106.14	109.48	-1.2197					133	63	5	0	0	0	0.055627	1	7712	7712		115.49	0	1	2113600			8689	35232	7095	7105	9697	9697					0.032325202637593975
ENIQGIII	8	Unmodified	_ENIQGIII_					0	0	0		tr|A0A7D6ZXZ9|A0A7D6ZXZ9_9CLOTBifunctionalproteinFolDOS=ClostridiumintestinaleOX=36845GN=folDPE=3SV=1	tr|A0A7D6ZXZ9|A0A7D6ZXZ9_9CLOTBifunctionalproteinFolDOS=ClostridiumintestinaleOX=36845GN=folDPE=3SV=1	tr|A0A7D6ZXZ9|A0A7D6ZXZ9_9CLOTBifunctionalproteinFolDOS=ClostridiumintestinaleOX=36845GN=folDPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.75146484375	2	450.263468	898.512382	2.4868	0.0011197	0.45141	0.00020325	2.9382	0.001323	450.26346657322927	78.285	0.44717	78.285	78.093	78.54	0					14	10	2	0	0	0	0.028476	1	7904	7904		17.365	0	1	157170			8690	35902	7096	7106	9698	9698					0.05906669040257384
ENIRMTDY	8	Unmodified	_ENIRMTDY_					0	0	0			REV__nc|ENSG00000127603|O94854|MACF1	REV__nc|ENSG00000127603|O94854|MACF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.2828369140625	2	521.237124	1040.45969	-0.63635	-0.00033169	0.26129	0.00013619	-0.37506	-0.0001955	521.2372375247578	68.779	0.6228	68.779	68.44	69.063	0					15	14	2	0	0	0	0.028476	1	6528	6528		23.042	2.0956	1	107310	+		8691	28838	7097	7107	9699	9699					-0.05891657084862345
ENISLSQLIT	10	Unmodified	_ENISLSQLIT_					0	0	0		tr|A0A553SGH1|A0A553SGH1_NIACISporegernimationproteinKCOS=NialliacirculansOX=1397GN=CEQ21_10805PE=3SV=1	tr|A0A553SGH1|A0A553SGH1_NIACISporegernimationproteinKCOS=NialliacirculansOX=1397GN=CEQ21_10805PE=3SV=1	tr|A0A553SGH1|A0A553SGH1_NIACISporegernimationproteinKCOS=NialliacirculansOX=1397GN=CEQ21_10805PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.82666015625	2	559.308603	1116.60265	0.23933	0.00013386	-0.54072	-0.00030243	-0.30138	-0.00016857	559.3081196062788	117.53	1.5741	116.19	115.84	117.42	-1.3444					52	29	3	0	0	0	0.026906	1	11028	11028		33.922	0	1	63670			8692	33156	7098	7108	9700	9700					0.04901673578001464
ENISLSQLIT	10	Unmodified	_ENISLSQLIT_					0	0	0		tr|A0A553SGH1|A0A553SGH1_NIACISporegernimationproteinKCOS=NialliacirculansOX=1397GN=CEQ21_10805PE=3SV=1	tr|A0A553SGH1|A0A553SGH1_NIACISporegernimationproteinKCOS=NialliacirculansOX=1397GN=CEQ21_10805PE=3SV=1	tr|A0A553SGH1|A0A553SGH1_NIACISporegernimationproteinKCOS=NialliacirculansOX=1397GN=CEQ21_10805PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	559.308603	1116.60265	-1.1923	-0.00066685	1.3469	0.00075336	0.15467	8.6508E-05	559.3090970454435	117.28	1.287	116.25	115.84	117.13	-1.0324	0.028055	0.0012713	NaN	33.922	44	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46619			8693	33156	7098	7108							0.04901673578001464
ENITILKTI	9	Unmodified	_ENITILKTI_					0	0	0			REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.3184814453125	2	522.818607	1043.62266	-0.18705	-9.7796E-05	0.34409	0.0001799	0.15704	8.2102E-05	522.8186178546069	63.007	0.8304	63.007	62.777	63.607	0					47	20	4	0	0	0	0.027137	1	5714	5714		113.41	0	1	2437100	+		8694	18807	7099	7109	9701	9701					0.10259469308630287
ENITKKLK	8	Unmodified	_ENITKKLK_					0	0	0			REV__tr|A0A7D6VSU7|A0A7D6VSU7_9CLOTBifunctionaldiguanylatecyclase/phosphodiesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_05530PE=4SV=1	REV__tr|A0A7D6VSU7|A0A7D6VSU7_9CLOTBifunctionaldiguanylatecyclase/phosphodiesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_05530PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.25140380859375	2	487.305667	972.596781	2.3002	0.0011209	-2.1546	-0.0010499	0.14565	7.0978E-05	487.3067192120149	91.603	0.25314	91.603	91.372	91.625	0					6	5	2	0	0	0	0.028476	1	9850	9850		49.442	10.189	1	102960	+		8695	31539	7100	7110	9702	9702					0.10938619856983678
ENITNDINL	9	Unmodified	_ENITNDINL_					0	0	0			REV__tr|A0A7D6VPY0|A0A7D6VPY0_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_00695PE=4SV=1	REV__tr|A0A7D6VPY0|A0A7D6VPY0_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_00695PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.7788696289062	2	523.261653	1044.50875	-0.67375	-0.00035255	3.823	0.0020004	3.1492	0.0016479	523.2636610632886	76.513	0.56072	73.574	73.318	73.879	-2.9389					16	11	2	0	0	0	0.027462	1	6045	6045		19.104	8.8383	1	59672	+		8696	31287	7101	7111	9703	9703					-0.011720455242993921
ENIWSKFLK	9	Unmodified	_ENIWSKFLK_					0	0	0			REV__nc|ENSG00000082153|Q7L1Q6-2|BZW1	REV__nc|ENSG00000082153|Q7L1Q6-2|BZW1	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.2732543945312	2	582.824224	1163.63389	1.1103	0.00064709	0.55568	0.00032387	1.666	0.00097096	582.8240306034519	119.07	0.28432	119.07	118.91	119.19	0					8	5	2	0	0	0	0.027461	1	13641	13641		32.812	0	1	42017	+		8697	17081	7102	7112	9704	9704					0.058622914027409934
ENIYFPSF	8	Unmodified	_ENIYFPSF_					0	0	0			REV__ENST00000548731.1_1_12:56544665-56551697:-|nuORF	REV__ENST00000548731.1_1_12:56544665-56551697:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.81646728515625	2	508.739825	1015.4651	-0.19703	-0.00010024	0.71807	0.00036531	0.52104	0.00026507	509.2401228794026	75.927	0.19383	72.988	72.839	73.033	-2.9389					5	3	2	0	0	0	0.028476	1	5995	5995		88.643	40.727	1	20926	+		8698	27444	7103	7113	9705	9705					-0.04201610230757069
ENIYLIKL	8	Unmodified	_ENIYLIKL_					0	0	0		SLC7A14|p.T743Pfs*4|1|0.32|ENSG00000013293|chr3:170467144-170467145|-/CCGG|frameshift_variant;ENSG00000013293|ENST00000231706|SLC7A14	SLC7A14|p.T743Pfs*4|1|0.32|ENSG00000013293|chr3:170467144-170467145|-/CCGG|frameshift_variant	SLC7A14|p.T743Pfs*4|1|0.32|ENSG00000013293|chr3:170467144-170467145|-/CCGG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	504.29730224609375	2	503.302593	1004.59063	-0.67674	-0.00034061	-0.68453	-0.00034453	-1.3613	-0.00068513	503.30202105291676	105.05	1.6236	103.04	102.53	104.16	-2.0161					44	27	2	0	0	0	0.028476	1	9509	9509		21.96	0	1	108070			8699	982	7104	7114	9706	9706					0.08852101625473097
ENKAKPIGL	9	Unmodified	_ENKAKPIGL_					0	0	0			REV__tr|A0A553SLU3|A0A553SLU3_NIACISugarkinaseOS=NialliacirculansOX=1397GN=CEQ21_21300PE=4SV=1	REV__tr|A0A553SLU3|A0A553SLU3_NIACISugarkinaseOS=NialliacirculansOX=1397GN=CEQ21_21300PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.7989196777344	2	485.290017	968.565481	0.40124	0.00019472	0.023395	1.1353E-05	0.42464	0.00020607	485.2897617539638	98.068	0.55394	95.69	95.317	95.871	-2.3786					28	10	4	0	0	0	0.027462	1	8723	8723		32.812	0	1	318660	+		8700	30265	7105	7115	9707	9707					0.07994046822898326
ENKFSLIE	8	Unmodified	_ENKFSLIE_					0	0	0		tr|A0A7D6VNL6|A0A7D6VNL6_9CLOTAcyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13080PE=4SV=1	tr|A0A7D6VNL6|A0A7D6VNL6_9CLOTAcyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13080PE=4SV=1	tr|A0A7D6VNL6|A0A7D6VNL6_9CLOTAcyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13080PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	489.29083251953125	2	490.258382	978.502212	-0.20183	-9.8947E-05	3.1902	0.001564	2.9884	0.0014651	490.25988043269115	60.222	0.57899	57.451	57.133	57.712	-2.7702					14	10	2	0	0	0	0.028476	1	4439	4439		31.53	0	1	15242			8701	34714	7106	7116	9708	9708					0.012100613149982564
ENKGNSKLL	9	Unmodified	_ENKGNSKLL_					0	0	0		tr|A0A553SGC1|A0A553SGC1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_10550PE=4SV=1	tr|A0A553SGC1|A0A553SGC1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_10550PE=4SV=1	tr|A0A553SGC1|A0A553SGC1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_10550PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	501.78240966796875	2	501.782556	1001.55056	-0.42646	-0.00021399	0.50474	0.00025327	0.078275	3.9277E-05	501.78251323779097	40.567	0.67579	40.567	40.294	40.969	0					33	14	4	0	0	0	0.44568	1	2474	2474		47.657	3.2801	1	543940			8702	33142	7107	7117	9709	9709					0.04984554954910436
ENKKISHLK	9	Unmodified	_ENKKISHLK_					0	0	0		tr|A0A553SQW4|A0A553SQW4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07335PE=4SV=1	tr|A0A553SQW4|A0A553SQW4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07335PE=4SV=1	tr|A0A553SQW4|A0A553SQW4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07335PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.2844848632812	2	548.827298	1095.64004	-1.2461	-0.00068392	1.0677	0.00058596	-0.17848	-9.7953E-05	548.82765833544	48.675	0.676	45.568	45.348	46.024	-3.1077					27	12	3	0	0	0	0.027433	1	2741	2741		45.972	6.7194	1	65160			8703	34206	7108	7118	9710	9710					0.09604809634265621
ENKKISHLK	9	Unmodified	_ENKKISHLK_					0	0	0		tr|A0A553SQW4|A0A553SQW4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07335PE=4SV=1	tr|A0A553SQW4|A0A553SQW4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07335PE=4SV=1	tr|A0A553SQW4|A0A553SQW4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07335PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	548.827298	1095.64004	-0.46288	-0.00025404	-0.033406	-1.8334E-05	-0.49628	-0.00027237	548.8269317044429	48.392	0.64876	45.654	45.302	45.951	-2.7382	0.043128	-0.0010016	NaN	37.812	18	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15684			8704	34206	7108	7118							0.09604809634265621
ENKLLIIHNDI	11	Unmodified	_ENKLLIIHNDI_					0	0	0		tr|A0A7D6VQ84|A0A7D6VQ84_9CLOTAryl-sulfatesulfotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19800PE=4SV=1	tr|A0A7D6VQ84|A0A7D6VQ84_9CLOTAryl-sulfatesulfotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19800PE=4SV=1	tr|A0A7D6VQ84|A0A7D6VQ84_9CLOTAryl-sulfatesulfotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19800PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	441.78851318359375	3	441.253993	1320.74015	2.1997	0.00097065	-1.2479	-0.00055065	0.95182	0.00042	441.25334921178745	65.234	1.261	62.51	62.128	63.389	-2.7245					59	24	3	0	0	0	0.025568	1	4981	4981		21.032	4.5024	1	53228			8705	34828	7109	7119	9711	9711					0.0926100217743624
ENKLNELEI	9	Unmodified	_ENKLNELEI_					0	0	0			REV__tr|A0A7D6VXP0|A0A7D6VXP0_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09465PE=4SV=1	REV__tr|A0A7D6VXP0|A0A7D6VXP0_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09465PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	551.2937622070312	2	551.292953	1100.57135	1.7921	0.00098795	1.1517	0.00063493	2.9438	0.0016229	551.2933605517647	78.606	0.90568	78.606	78.335	79.24	0					45	21	4	0	0	0	0.030867	1	7966	7966		134.77	6.1634	1	3345300	+		8706	31783	7110	7120	9712	9712					0.025091005438980574
ENKLNELEI	9	Unmodified	_ENKLNELEI_					0	0	0			REV__tr|A0A7D6VXP0|A0A7D6VXP0_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09465PE=4SV=1	REV__tr|A0A7D6VXP0|A0A7D6VXP0_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09465PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.2958984375	2	551.292953	1100.57135	-0.8456	-0.00046617	1.6224	0.00089441	0.77678	0.00042823	551.2936727801224	81.198	0.82931	78.487	78.347	79.176	-2.7106					37	16	3	0	0	0	0.060996	1	6682	6682		112.41	0	1	400380	+		8707	31783	7110	7120	9713	9713					0.025091005438980574
ENKLRELFIQL	11	Unmodified	_ENKLRELFIQL_					0	0	0			REV__ENSG00000111530|ENST00000545606|CAND1	REV__ENSG00000111530|ENST00000545606|CAND1	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.75360107421875	3	468.273276	1401.798	-0.93898	-0.0004397	2.8299	0.0013252	1.8909	0.00088548	468.2744493328487	34.748	0.7062	34.748	34.491	35.198	0					27	14	3	0	0	0	0.02616	1	1691	1691		25.068	7.901	1	281860	+		8708	18037	7111	7121	9714	9714					0.11317264102831359
ENKLRELSD	9	Unmodified	_ENKLRELSD_					0	0	0			REV__TTC39C|p.F376L|1|0.04|ENSG00000168234|chr18:24118174-24118174|T/G|missense_variant	REV__TTC39C|p.F376L|1|0.04|ENSG00000168234|chr18:24118174-24118174|T/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3189086914062	2	552.288202	1102.56185	-0.58162	-0.00032122	0.82845	0.00045755	0.24684	0.00013632	552.2884370260509	49.214	0.29863	49.214	49.119	49.418	0					8	6	2	0	0	0	0.027462	1	3668	3668		37.812	22.947	1	130210	+		8709	32736	7112	7122	9715	9715					0.01467332258357601
ENKLRELSD	9	Unmodified	_ENKLRELSD_					0	0	0			REV__TTC39C|p.F376L|1|0.04|ENSG00000168234|chr18:24118174-24118174|T/G|missense_variant	REV__TTC39C|p.F376L|1|0.04|ENSG00000168234|chr18:24118174-24118174|T/G|missense_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	552.288202	1102.56185	-0.60866	-0.00033616	-0.8174	-0.00045144	-1.4261	-0.0007876	552.2880173836264	52.757	1.1067	49.549	49.145	50.252	-3.208	0.16742	-0.00073979	NaN	30.318	48	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103180	+		8710	32736	7112	7122							0.01467332258357601
ENKNQVPIQ	9	Unmodified	_ENKNQVPIQ_					0	0	0		tr|A0A7D7A231|A0A7D7A231_9CLOTDUF4878domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18000PE=4SV=1	tr|A0A7D7A231|A0A7D7A231_9CLOTDUF4878domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18000PE=4SV=1	tr|A0A7D7A231|A0A7D7A231_9CLOTDUF4878domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18000PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.8154296875	2	535.285463	1068.55637	1.8685	0.0010002	0.90578	0.00048485	2.7743	0.001485	535.2855222505993	116.6	0.44498	116.6	116.46	116.91	0					11	9	2	0	0	0	0.027462	1	13346	13346		49.536	3.5638	1	85252			8711	36059	7113	7123	9716	9716					0.024836534665837462
ENKQEETL	8	Unmodified	_ENKQEETL_					0	0	0			REV__ENSG00000114854|ENST00000232975|TNNC1	REV__ENSG00000114854|ENST00000232975|TNNC1	MULTI-SECPEP	OvCa9_classI_Rep3	3	494.7953796386719	2	495.740554	989.466554	-0.78886	-0.00039107	3.1199	0.0015467	2.3311	0.0011556	495.7416263264735	97.199	0.30916	95.44	95.362	95.672	-1.7595					7	5	2	0	0	0	0.028476	1	6452	6452		23.042	1.0826	1	12313	+		8712	18206	7114	7124	9717	9717					-0.028600209326668846
ENKQKLLI	8	Unmodified	_ENKQKLLI_					0	0	0			REV__nc|ENSG00000104635|Q15043-3|SLC39A14	REV__nc|ENSG00000104635|Q15043-3|SLC39A14	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.7868957519531	2	493.305667	984.596781	0.72305	0.00035668	-1.0154	-0.00050089	-0.29233	-0.00014421	493.3050876247935	96.576	1.1821	95.617	95.281	96.464	-0.95857					51	23	3	0	0	0	0.028476	1	8749	8749		23.042	0	1	230670	+		8713	28780	7115	7125	9718	9718					0.10386619857001733
ENKRQLFTA	9	Unmodified	_ENKRQLFTA_					0	0	0			REV__nc|ENSG00000174371|Q9UQ84-4|EXO1	REV__nc|ENSG00000174371|Q9UQ84-4|EXO1	MULTI-MSMS	OvCa99_classI_Rep5	1	553.8031005859375	2	553.80128	1105.58801	-0.46359	-0.00025674	0.13386	7.413E-05	-0.32974	-0.00018261	553.8012438337539	66.393	0.72141	66.393	66.136	66.857	0					41	17	3	0	0	0	0.26076	1	6142	6142		67.494	10.773	1	4964200	+		8714	21826	7116	7126	9719	9719					0.03943646220523078
ENKRSKVL	8	Unmodified	_ENKRSKVL_					0	0	0			REV__nc|ENSG00000104067|Q07157-2|TJP1	REV__nc|ENSG00000104067|Q07157-2|TJP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.2974853515625	2	487.293091	972.571629	-0.15015	-7.3167E-05	-0.30825	-0.00015021	-0.4584	-0.00022337	487.2928615392461	39.498	1.8328	36.572	36.296	38.129	-2.9264					81	35	4	0	0	0	0.028476	1	1652	1652		47.916	9.1095	1	525940	+		8715	17643	7117	7127	9720	9720					0.08424565054417599
ENKSKICQT	9	Unmodified	_ENKSKICQT_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.E2391Hfs*33|1|0.06|ENSG00000139618|chr13:32355023-32355024|-/CATGCTTTGGGTACCTGTAATCCCAGCACTTTGGCAG|frameshift_variant;BRCA2|p.S2697Kfs*31|1|0.46|ENSG00000139618|chr13:32363289-32363304|TGAGCGCAAATATATC/-|frameshift_variant;BRCA2|p.L3172Afs*44|1|0.79|ENSG00000139618|chr13:32396908-32396911|TACT/-|frameshift_variant;BRCA2|p.M3322*|1|0.04|ENSG00000139618|chr13:32398476-32398476|G/-|frameshift_variant	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7933349609375	2	525.766049	1049.51754	-0.68208	-0.00035861	0.81986	0.00043105	0.13778	7.2441E-05	525.7663103625273	48.58	0.43542	48.58	48.372	48.807	0					11	9	2	0	0	0	0.027462	1	3605	3605		52.937	21.407	1	130700			8716	4788	7118	7128	9721	9721					-0.005233951594618702
ENKVPRLK	8	Unmodified	_ENKVPRLK_					0	0	0		nc|ENSG00000173575|O14647-2|CHD2;ENSG00000173575|ENST00000394196|CHD2	nc|ENSG00000173575|O14647-2|CHD2	nc|ENSG00000173575|O14647-2|CHD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.72412109375	2	492.303458	982.592364	-0.96942	-0.00047725	0.51259	0.00025235	-0.45683	-0.0002249	492.3035905974322	37.368	0.95969	37.368	37.023	37.983	0					42	20	3	0	0	0	0.028476	1	2023	2023		21.96	0	1	1074200			8717	7391	7119	7129	9722	9722					0.10037155434088163
ENLAHKLY	8	Unmodified	_ENLAHKLY_					0	0	0		tr|A0A553SJN0|A0A553SJN0_NIACIGlycogensynthaseOS=NialliacirculansOX=1397GN=glgAPE=3SV=1	tr|A0A553SJN0|A0A553SJN0_NIACIGlycogensynthaseOS=NialliacirculansOX=1397GN=glgAPE=3SV=1	tr|A0A553SJN0|A0A553SJN0_NIACIGlycogensynthaseOS=NialliacirculansOX=1397GN=glgAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.7742919921875	2	494.266542	986.51853	-0.58783	-0.00029055	-3.022	-0.0014937	-3.6098	-0.0017842	494.26509156895906	53.177	1.0048	49.969	49.602	50.607	-3.208					27	19	2	0	0	0	0.028476	1	3194	3194		33.516	5.6333	1	126060			8718	33520	7120	7130	9723	9723					0.02473187271743882
ENLAHKLY	8	Unmodified	_ENLAHKLY_					0	0	0		tr|A0A553SJN0|A0A553SJN0_NIACIGlycogensynthaseOS=NialliacirculansOX=1397GN=glgAPE=3SV=1	tr|A0A553SJN0|A0A553SJN0_NIACIGlycogensynthaseOS=NialliacirculansOX=1397GN=glgAPE=3SV=1	tr|A0A553SJN0|A0A553SJN0_NIACIGlycogensynthaseOS=NialliacirculansOX=1397GN=glgAPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	494.266542	986.51853	-0.79812	-0.00039449	-2.515	-0.0012431	-3.3131	-0.0016375	494.2649766221646	53.108	0.93805	50.295	49.739	50.677	-2.8139	0.16287	0.00040047	NaN	18.324	23	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21273			8719	33520	7120	7130							0.02473187271743882
ENLAQVIVK	9	Unmodified	_ENLAQVIVK_					0	0	0			REV__tr|A0A7D6W3C5|A0A7D6W3C5_9CLOTPeptidedeformylaseOS=ClostridiumintestinaleOX=36845GN=defPE=3SV=1	REV__tr|A0A7D6W3C5|A0A7D6W3C5_9CLOTPeptidedeformylaseOS=ClostridiumintestinaleOX=36845GN=defPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.7644958496094	2	507.303124	1012.5917	1.1068	0.00056146	1.861	0.00094407	2.9677	0.0015055	507.30364572034733	90.863	0.64009	90.863	90.615	91.255	0					29	15	3	0	0	0	0.027462	1	9733	9733		22.58	9.1256	1	3464200	+		8720	31912	7121	7131	9724	9724					0.08590315994376851
ENLDLFNTD	9	Unmodified	_ENLDLFNTD_					0	0	0		tr|A0A7D6VTS6|A0A7D6VTS6_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_18070PE=3SV=1	tr|A0A7D6VTS6|A0A7D6VTS6_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_18070PE=3SV=1	tr|A0A7D6VTS6|A0A7D6VTS6_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_18070PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.83056640625	2	540.745836	1079.47712	2.8364	0.0015338	-0.18567	-0.0001004	2.6507	0.0014334	540.7458898949425	87.994	0.7084	87.994	87.546	88.255	0					25	16	2	0	0	0	0.027438	1	9311	9311		47.96	0	1	269250			8721	35138	7122	7132	9725	9725					-0.05944038278244079
ENLDSLVNLKV	11	Unmodified	_ENLDSLVNLKV_					0	0	0		ENSG00000188306|ENST00000340806|LRRIQ4	ENSG00000188306|ENST00000340806|LRRIQ4	ENSG00000188306|ENST00000340806|LRRIQ4	MULTI-MSMS	OvCa9_classI_Rep2	2	622.3478393554688	2	622.34826	1242.68197	-2.1525	-0.0013396	2.0645	0.0012849	-0.087985	-5.4758E-05	622.3494484147533	118.64	1.3857	118.49	117.99	119.37	-0.14755					77	27	4	0	0	0	0.25759	1	11393	11393		72.243	5.2813	1	306460			8722	8462	7123	7133	9726	9726					0.07033320532127618
ENLDSLVNLKV	11	Unmodified	_ENLDSLVNLKV_					0	0	0		ENSG00000188306|ENST00000340806|LRRIQ4	ENSG00000188306|ENST00000340806|LRRIQ4	ENSG00000188306|ENST00000340806|LRRIQ4	MULTI-MSMS	OvCa9_classI_Rep4_	4	622.3464965820312	2	622.34826	1242.68197	-1.5822	-0.00098469	1.1949	0.00074362	-0.38737	-0.00024108	622.3488602972496	119.44	1.6147	118.1	117.78	119.4	-1.3444					76	30	4	0	0	0	0.27273	1	11211	11211		70.399	12.152	1	425170			8723	8462	7123	7133	9727	9727					0.07033320532127618
ENLELTAAI	9	Unmodified	_ENLELTAAI_					0	0	0			REV__ENSG00000120094|ENST00000239174|HOXB1	REV__ENSG00000120094|ENST00000239174|HOXB1	MULTI-SECPEP	OvCa9_classI_Rep3	3	487.28253173828125	2	487.263665	972.512776	-0.99975	-0.00048714	-1.3505	-0.00065806	-2.3503	-0.0011452	487.26402668631215	97.506	0.74532	95.746	95.517	96.262	-1.7595					33	14	3	0	0	0	0.027441	1	6526	6526		49.442	1.7842	1	82511	+		8724	18485	7124	7134	9728	9728					0.025420439694244124
ENLEQLFALV	10	Unmodified	_ENLEQLFALV_					0	0	0			REV__ENSG00000119922|ENST00000371826|IFIT2	REV__ENSG00000119922|ENST00000371826|IFIT2	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.293212890625	2	588.318971	1174.62339	1.6333	0.00096089	2.485	0.0014619	4.1182	0.0024228	588.3200107274121	79.549	0.35494	79.549	79.311	79.666	0					12	8	2	0	0	0	0.026891	1	8120	8120		24.519	0	1	395350	+		8725	18473	7125	7135	9729	9729					0.04306263957664669
ENLFLKSNL	9	Unmodified	_ENLFLKSNL_					0	0	0			REV__ENSG00000171206|ENST00000643721|TRIM8	REV__ENSG00000171206|ENST00000643721|TRIM8	MULTI-MSMS	OvCa9_classI_Rep3	3	539.3016357421875	2	539.300581	1076.58661	0.16369	8.8279E-05	0.0023222	1.2524E-06	0.16601	8.9531E-05	539.3003511647123	97.002	2.402	95.174	94.827	97.229	-1.8286					127	46	4	0	0	0	0.21231	1	6409	6409		74.255	0	1	768590	+		8726	21602	7126	7136	9730	9730					0.05138012131783398
ENLGICYRPN	10	Unmodified	_ENLGICYRPN_					0	0	0			REV__ENST00000563447.1_1_16:2293017-2294430:-|nuORF	REV__ENST00000563447.1_1_16:2293017-2294430:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.3211059570312	2	589.784773	1177.55499	0.51973	0.00030653	2.2131	0.0013053	2.7329	0.0016118	589.7865667952692	72.187	0.61768	72.187	71.956	72.574	0					25	14	2	0	0	0	0.026782	1	7056	7056		23.523	0	1	597710	+		8727	21323	7127	7137	9731	9731					-0.026683038938244863
ENLGIKVKLIH	11	Unmodified	_ENLGIKVKLIH_					0	0	0			REV__CON__Q2KJC7	REV__CON__Q2KJC7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	422.7433166503906	3	421.930962	1262.77106	-1.3421	-0.00056627	1.2717	0.00053658	-0.070378	-2.9695E-05	421.9314550060107	45.468	0.78292	42.43	42.23	43.013	-3.0385					23	14	3	0	0	0	0.026232	1	2345	2345		15.921	0	1	26327	+	+	8728	16204	7128	7138	9732	9732					0.15018200282338512
ENLGQVLTD	9	Unmodified	_ENLGQVLTD_					0	0	0			REV__nc|ENSG00000136261|Q9Y6E2-2|BZW2	REV__nc|ENSG00000136261|Q9Y6E2-2|BZW2	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.79962158203125	2	494.750921	987.48729	-0.96923	-0.00047953	-1.0046	-0.00049704	-1.9739	-0.00097657	494.7504529855575	49.619	0.39404	49.619	49.462	49.856	0					21	8	3	0	0	0	0.027461	1	3704	3704		13.454	0	1	261200	+		8729	19372	7129	7139	9733	9733					-0.006954305530030069
ENLGRAAPLS	10	Unmodified	_ENLGRAAPLS_					0	0	0			REV__PHLPP1|p.Q1514Hfs*26|1|0.18|ENSG00000081913|chr18:62978815-62978816|-/ACAT|frameshift_variant	REV__PHLPP1|p.Q1514Hfs*26|1|0.18|ENSG00000081913|chr18:62978815-62978816|-/ACAT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.2813110351562	2	514.28018	1026.54581	-1.0682	-0.00054933	0.55136	0.00028355	-0.51679	-0.00026578	514.2803354121114	41.326	1.04	38.346	38.127	39.167	-2.9804					34	19	2	0	0	0	0.5635	1	1847	1847		46.457	2.34	1	245260	+		8730	17078	7130	7140	9734	9734					0.033596708121422125
ENLGRAAPLS	10	Unmodified	_ENLGRAAPLS_					0	0	0			REV__PHLPP1|p.Q1514Hfs*26|1|0.18|ENSG00000081913|chr18:62978815-62978816|-/ACAT|frameshift_variant	REV__PHLPP1|p.Q1514Hfs*26|1|0.18|ENSG00000081913|chr18:62978815-62978816|-/ACAT|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.28018	1026.54581	0.68142	0.00035044	-1.0478	-0.00053888	-0.36642	-0.00018844	514.2795139911456	41.158	0.88626	38.449	38.241	39.127	-2.7097	0.051352	-0.0010074	NaN	46.457	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67538	+		8731	17078	7130	7140							0.033596708121422125
ENLHDIAL	8	Unmodified	_ENLHDIAL_					0	0	0			REV__ENST00000460780.5_1_1:201330340-201331096:-|nuORF	REV__ENST00000460780.5_1_1:201330340-201331096:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.7619323730469	2	462.742899	923.471246	-1.2162	-0.00056278	4.3717	0.002023	3.1555	0.0014602	462.7447775855347	80.545	0.24045	77.834	77.762	78.003	-2.7106					6	4	2	0	0	0	0.028476	1	6578	6578		27.882	19.651	1	48233	+		8732	18382	7131	7141	9735	9735					0.006449080007428165
ENLHNYGIV	9	Unmodified	_ENLHNYGIV_					0	0	0		MAST2|p.Y625N|1|0.19|ENSG00000086015|chr1:46025769-46025769|T/A|missense_variant	MAST2|p.Y625N|1|0.19|ENSG00000086015|chr1:46025769-46025769|T/A|missense_variant	MAST2|p.Y625N|1|0.19|ENSG00000086015|chr1:46025769-46025769|T/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.796875	2	529.766906	1057.51926	-0.31699	-0.00016793	0.233	0.00012344	-0.083986	-4.4493E-05	529.7669419469121	98.615	0.82757	96.93	96.646	97.474	-1.685					26	15	2	0	0	0	0.027462	1	6631	6631		34.173	2.6427	1	84248			8733	14821	7132	7142	9736	9736					-0.00720018079186957
ENLIAKKTE	9	Unmodified	_ENLIAKKTE_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1;ENST00000472714.1_1_7:107564398-107569844:-|nuORF	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.2698364257812	2	523.298039	1044.58152	-0.70666	-0.00036979	0.4228	0.00022125	-0.28386	-0.00014854	523.2981214001586	121.63	0.97524	120.28	120	120.98	-1.3479					26	18	2	0	0	0	0.027462	1	11458	11458		38.754	12.061	1	60776			8734	1865	7133	7143	9737	9737					0.061017082691250835
ENLIAKKTE	9	Unmodified	_ENLIAKKTE_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1;ENST00000472714.1_1_7:107564398-107569844:-|nuORF	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	523.298039	1044.58152	1.7159	0.00089794	0.60539	0.0003168	2.3213	0.0012147	523.2985168541969	120.42	0.23908	120.42	120.32	120.56	0	0.084341	9.0575E-05	NaN	38.754	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90156			8735	1865	7133	7143							0.061017082691250835
ENLILLLL	8	Unmodified	_ENLILLLL_					0	0	0		ENST00000559084.1_1_14:24760067-24760244:-|nuORF	ENST00000559084.1_1_14:24760067-24760244:-|nuORF	ENST00000559084.1_1_14:24760067-24760244:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.28192138671875	2	470.807511	939.600469	0.5173	0.00024355	-3.4651	-0.0016314	-2.9478	-0.0013878	470.8057644367565	63.16	0.32086	63.16	63.016	63.337	0					13	7	2	0	0	0	0.028476	1	5647	5647		12.207	0	1	302580			8736	13711	7134	7144	9738	9738					0.12825289630870884
ENLKELGKL	9	Unmodified	_ENLKELGKL_					0	0	0		tr|A0A7D6ZN19|A0A7D6ZN19_9CLOTBeta-propellerdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14325PE=4SV=1	tr|A0A7D6ZN19|A0A7D6ZN19_9CLOTBeta-propellerdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14325PE=4SV=1	tr|A0A7D6ZN19|A0A7D6ZN19_9CLOTBeta-propellerdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14325PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.3030395507812	2	522.308406	1042.60226	-1.3075	-0.00068294	-0.50604	-0.00026431	-1.8136	-0.00094724	522.3076708198822	53.786	1.7405	50.538	50.161	51.901	-3.2474					72	33	4	0	0	0	0.64427	1	3377	3377		26.693	0	1	1360800			8737	35672	7135	7145	9739	9739					0.08266298648823067
ENLKIDGEL	9	Unmodified	_ENLKIDGEL_					0	0	0		tr|A0A7D6VRY2|A0A7D6VRY2_9CLOTPyruvate:ferredoxinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=nifJPE=3SV=1	tr|A0A7D6VRY2|A0A7D6VRY2_9CLOTPyruvate:ferredoxinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=nifJPE=3SV=1	tr|A0A7D6VRY2|A0A7D6VRY2_9CLOTPyruvate:ferredoxinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=nifJPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.2745971679688	2	515.774396	1029.53424	1.9517	0.0010066	-3.6089	-0.0018614	-1.6572	-0.00085475	516.2730276447775	76.36	1.2164	76.36	76.036	77.252	0					70	29	3	0	0	0	0.051592	1	7654	7654		117.81	10.804	1	21428000			8738	34964	7136	7146	9740	9740					0.020654289981621332
ENLKINFR	8	Unmodified	_ENLKINFR_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5;DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant;DNAH5|p.M2992Ifs*5|1|0.15|ENSG00000039139|chr5:13777331-13777332|-/AA|frameshift_variant;DNAH5|p.M2992Sfs*34|1|0.14|ENSG00000039139|chr5:13777333-13777334|-/ACAGATAGATAGATAGACAGACAGA|frameshift_variant	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.7536010742188	2	517.293091	1032.57163	2.9129	0.0015068	-1.1472	-0.00059345	1.7657	0.00091338	517.2924112121382	87.958	0.87965	87.958	87.838	88.717	0					21	20	2	0	0	0	0.028476	1	9344	9344		29.15	0	1	119350			8739	1103	7137	7147	9741	9741					0.05664565054416926
ENLKINFR	8	Unmodified	_ENLKINFR_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5;DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant;DNAH5|p.M2992Ifs*5|1|0.15|ENSG00000039139|chr5:13777331-13777332|-/AA|frameshift_variant;DNAH5|p.M2992Sfs*34|1|0.14|ENSG00000039139|chr5:13777333-13777334|-/ACAGATAGATAGATAGACAGACAGA|frameshift_variant	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.8270874023438	2	517.293091	1032.57163	0.58487	0.00030255	-0.13767	-7.1214E-05	0.4472	0.00023133	517.2910841516077	90.995	0.11977	90.995	90.938	91.057	0					4	2	2	0	0	0	0.028476	1	9784	9784		45.952	13.997	1	106460			8740	1103	7137	7147	9742	9742					0.05664565054416926
ENLLHGYLV	9	Unmodified	_ENLLHGYLV_					0	0	0			REV__tr|A0A553SFI0|A0A553SFI0_NIACIStageVsporulationproteinADOS=NialliacirculansOX=1397GN=spoVADPE=4SV=1	REV__tr|A0A553SFI0|A0A553SFI0_NIACIStageVsporulationproteinADOS=NialliacirculansOX=1397GN=spoVADPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7608642578125	2	529.287474	1056.5604	0.011719	6.2029E-06	3.6331	0.0019229	3.6448	0.0019291	529.2912307044711	46.566	0.8736	46.566	45.979	46.852	0					25	19	2	0	0	0	0.027462	1	3302	3302		44.117	1.7207	1	93251	+		8741	29581	7138	7148	9743	9743					0.034377429602727716
ENLLLQIVILD	11	Unmodified	_ENLLLQIVILD_					0	0	0		ENST00000399302.6_2_11:32976908-32977582:+|nuORF	ENST00000399302.6_2_11:32976908-32977582:+|nuORF	ENST00000399302.6_2_11:32976908-32977582:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8828125	2	641.884478	1281.7544	-2.5182	-0.0016164	-0.91689	-0.00058854	-3.4351	-0.0022049	641.8839546837315	150.47	2.9704	149.03	147.78	150.75	-1.4344					235	64	4	0	0	0	0.71498	1	14770	14770		24.519	0.99649	1	344900			8742	11386	7139	7149	9744	9744					0.12479654605704127
ENLLQGNKII	10	Unmodified	_ENLLQGNKII_					0	0	0			REV__tr|A0A553SP64|A0A553SP64_NIACIDihydroorotaseOS=NialliacirculansOX=1397GN=pyrCPE=3SV=1	REV__tr|A0A553SP64|A0A553SP64_NIACIDihydroorotaseOS=NialliacirculansOX=1397GN=pyrCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	571.333251953125	2	571.332413	1140.65027	-1.1599	-0.00066269	1.3452	0.00076858	0.18534	0.00010589	571.3328176283721	117.47	1.4872	116.44	116.09	117.58	-1.0324					92	29	6	0	0	0	0.44431	1	8828	8828		62.107	0	1	214260	+		8743	30500	7140	7150	9745	9745					0.08557372568861865
ENLLSQLLI	9	Unmodified	_ENLLSQLLI_					0	0	0			REV__ENST00000529265.5_1_11:61717864-61725974:+|nuORF	REV__ENST00000529265.5_1_11:61717864-61725974:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.28173828125	2	521.810782	1041.60701	1.2652	0.00066018	1.1845	0.00061811	2.4497	0.0012783	521.8111597713928	91.308	0.77763	91.308	90.976	91.753	0					56	18	4	0	0	0	0.027411	1	9833	9833		70.816	7.2824	1	3929400	+		8744	21331	7141	7151	9746	9746					0.08787182791570558
ENLLYTDYF	9	Unmodified	_ENLLYTDYF_					0	0	0		tr|A0A553SLG8|A0A553SLG8_NIACIGDSLfamilylipaseOS=NialliacirculansOX=1397GN=CEQ21_20585PE=4SV=1	tr|A0A553SLG8|A0A553SLG8_NIACIGDSLfamilylipaseOS=NialliacirculansOX=1397GN=CEQ21_20585PE=4SV=1	tr|A0A553SLG8|A0A553SLG8_NIACIGDSLfamilylipaseOS=NialliacirculansOX=1397GN=CEQ21_20585PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.3211059570312	2	589.274229	1176.53391	0.30276	0.00017841	1.1945	0.00070389	1.4973	0.0008823	589.2760519720862	72.745	0.42678	72.745	72.45	72.877	0					21	10	3	0	0	0	0.027455	1	7056	7056		34.173	0	1	216430			8745	33720	7142	7152	9747	9747					-0.04729990721716604
ENLNSFKEA	9	Unmodified	_ENLNSFKEA_					0	0	0		tr|A0A7D6VNW9|A0A7D6VNW9_9CLOTPhospho-sugarmutaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14760PE=3SV=1	tr|A0A7D6VNW9|A0A7D6VNW9_9CLOTPhospho-sugarmutaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14760PE=3SV=1	tr|A0A7D6VNW9|A0A7D6VNW9_9CLOTPhospho-sugarmutaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14760PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.275146484375	2	526.256371	1050.49819	-1.1866	-0.00062444	1.6795	0.00088386	0.49296	0.00025942	526.257898729179	94.632	0.50497	92.736	92.409	92.914	-1.8956					12	9	2	0	0	0	0.02557	1	6120	6120		131.03	0	1	10695			8746	34734	7143	7153	9748	9748					-0.025040281787141794
ENLPCVHLN	9	Unmodified	_ENLPCVHLN_					0	0	0		nc|ENSG00000129455|O60259-2|KLK8;ENST00000599710.1_1_19:51503678-51504381:-|nuORF	nc|ENSG00000129455|O60259-2|KLK8	nc|ENSG00000129455|O60259-2|KLK8	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2933959960938	2	519.755484	1037.49641	-1.3705	-0.00071231	-1.4384	-0.0007476	-2.8088	-0.0014599	519.7545366246219	27.13	0.19895	27.13	26.992	27.191	0					6	3	2	0	0	0	0.027462	1	760	760		19.104	0	1	43787			8747	15008	7144	7154	9749	9749					-0.02083360468304818
ENLPLDMVKL	10	Unmodified	_ENLPLDMVKL_					0	0	0			REV__tr|A0A7D6VQ15|A0A7D6VQ15_9CLOTDNArepairproteinRadCOS=ClostridiumintestinaleOX=36845GN=radCPE=3SV=1	REV__tr|A0A7D6VQ15|A0A7D6VQ15_9CLOTDNArepairproteinRadCOS=ClostridiumintestinaleOX=36845GN=radCPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	585.3391723632812	2	586.323199	1170.63185	-2.5082	-0.0014706	-3.8415	-0.0022524	-6.3497	-0.003723	586.3209883037296	85.28	0.74583	83.06	82.84	83.586	-2.2204					22	14	2	0	0	0	0.026681	1	5042	5042		52.937	1.744	1	38852	+		8748	31293	7145	7155	9750	9750					0.053354946026274774
ENLPLKLEIA	10	Unmodified	_ENLPLKLEIA_					0	0	0			REV__tr|A0A553SNN2|A0A553SNN2_NIACITetratricopeptiderepeatgroup5domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24785PE=4SV=1	REV__tr|A0A553SNN2|A0A553SNN2_NIACITetratricopeptiderepeatgroup5domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24785PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	570.7806396484375	2	570.337164	1138.65977	-1.7561	-0.0010016	2.9107	0.0016601	1.1546	0.0006585	570.3378953708902	92.993	0.48914	91.032	90.79	91.279	-1.9617					15	9	3	0	0	0	0.027088	1	5948	5948		26.693	2.1737	1	22342	+		8749	30433	7146	7156	9751	9751					0.09599140854356847
ENLREEASGD	10	Unmodified	_ENLREEASGD_					0	0	0		nc|ENSG00000084093|Q13127-4|REST;ENSG00000084093|ENST00000309042|REST	nc|ENSG00000084093|Q13127-4|REST	nc|ENSG00000084093|Q13127-4|REST	MULTI-SECPEP	OvCa9_classI_Rep2	2	560.8035888671875	2	560.249274	1118.484	1.4154	0.00079298	2.3689	0.0013272	3.7843	0.0021202	560.2504123425143	91.641	0.73725	90.405	90.114	90.851	-1.2355					22	13	2	0	0	0	0.026968	1	8136	8136		36.447	7.2767	1	36492			8750	1710	7147	7157	9752	9752					-0.07050725397652968
ENLRLPTL	8	Unmodified	_ENLRLPTL_					0	0	0		ENSG00000171103|ENST00000306108|TRMT61B	ENSG00000171103|ENST00000306108|TRMT61B	ENSG00000171103|ENST00000306108|TRMT61B	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.3058776855469	2	478.282192	954.549831	-0.32014	-0.00015312	0.60955	0.00029154	0.2894	0.00013842	478.28212719690976	48.116	0.51468	48.116	47.941	48.455	0					16	11	2	0	0	0	0.028476	1	3544	3544		37.159	0	1	223950			8751	7170	7148	7158	9753	9753					0.07073760305854648
ENLSIGLSIP	10	Unmodified	_ENLSIGLSIP_					0	0	0			REV__ENSG00000166415|ENST00000360509|WDR72	REV__ENSG00000166415|ENST00000360509|WDR72	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.262451171875	2	521.792589	1041.57063	-0.88138	-0.0004599	0.10964	5.7208E-05	-0.77174	-0.00040269	521.7926235630191	99.203	1.1328	96.878	96.484	97.617	-2.3253					44	21	3	0	0	0	0.028	1	8859	8859		101.46	28.581	1	211890	+		8752	21190	7149	7159	9754	9754					0.0515030589485832
ENLSIGLSIP	10	Unmodified	_ENLSIGLSIP_					0	0	0			REV__ENSG00000166415|ENST00000360509|WDR72	REV__ENSG00000166415|ENST00000360509|WDR72	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.792589	1041.57063	0.137	7.1487E-05	-0.69739	-0.00036389	-0.56039	-0.00029241	521.7921782326093	97.905	1.1298	96.965	96.63	97.76	-0.94027	0.0081757	-0.00059506	NaN	101.46	45	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184370	+		8753	21190	7149	7159							0.0515030589485832
ENLSIGLSIP	10	Unmodified	_ENLSIGLSIP_					0	0	0			REV__ENSG00000166415|ENST00000360509|WDR72	REV__ENSG00000166415|ENST00000360509|WDR72	MULTI-MATCH	OvCa9_classI_Rep3	3		2	521.792589	1041.57063	-0.22882	-0.0001194	0.0035884	1.8724E-06	-0.22524	-0.00011753	521.7925777287066	98.713	1.2873	97.028	96.697	97.985	-1.685	0.070991	0.00013647	NaN	101.46	49	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227430	+		8754	21190	7149	7159							0.0515030589485832
ENLSLFAKI	9	Unmodified	_ENLSLFAKI_					0	0	0		ENSG00000154262|ENST00000284425|ABCA6;ENST00000589803.5_1_17:67102167-67114054:-|nuORF;ENST00000590311.5_1_17:67109638-67111556:-|nuORF;nc|ENSG00000154262|Q8N139-2|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.7938232421875	2	517.797675	1033.5808	1.392	0.00072078	-1.5327	-0.00079361	-0.14066	-7.2834E-05	517.7979464383187	103.12	0.96483	103.12	102.38	103.34	0					30	22	2	0	0	0	0.027433	1	11543	11543		60.972	10.947	1	718260			8755	5724	7150	7160	9755	9755					0.06534913620089355
ENLTIAVNMT	10	Oxidation (M)	_ENLTIAVNM(Oxidation (M))T_		ENLTIAVNM(1)T		ENLTIAVNM(86)T	0	0	1		ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.2777709960938	2	561.278989	1120.54342	1.0019	0.00056236	-1.3866	-0.00077828	-0.38468	-0.00021591	561.2781800740087	102.82	1.6749	100.62	100.31	101.98	-2.1994					55	31	3	0	0	0	0.25842	1	9282	9282		85.862	11.697	1	221870			8756	6288	7151	7161	9756	9756		197			-0.012025457078379986
ENLTISLCH	9	Unmodified	_ENLTISLCH_					0	0	0		nc|ENSG00000164323|Q9P2B7-2|CFAP97	nc|ENSG00000164323|Q9P2B7-2|CFAP97	nc|ENSG00000164323|Q9P2B7-2|CFAP97	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.7455444335938	2	515.255317	1028.49608	-0.17591	-9.064E-05	-2.6851	-0.0013835	-2.861	-0.0014741	515.2534832498905	95.535	0.84129	93.639	93.362	94.204	-1.8956					29	16	3	0	0	0	0.027459	1	6283	6283		36.447	3.6343	1	143310			8757	15144	7152	7162	9757	9757					-0.017027801881795313
ENLVCLCFL	9	Unmodified	_ENLVCLCFL_					0	0	0		ENST00000486224.5_1_3:17627914-17665376:-|nuORF	ENST00000486224.5_1_3:17627914-17665376:-|nuORF	ENST00000486224.5_1_3:17627914-17665376:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	527.2581787109375	2	527.259013	1052.50347	-0.95708	-0.00050463	-0.14641	-7.7196E-05	-1.1035	-0.00058182	527.2588739359546	42.144	0.59869	42.144	41.897	42.496	0					44	13	5	0	0	0	0.27546	1	2680	2680		65.803	7.5733	1	827820			8758	12620	7153	7163	9758	9758					-0.020677639121004177
ENLVPVLAVV	10	Unmodified	_ENLVPVLAVV_					0	0	0			REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.7772827148438	2	526.82115	1051.62775	-1.4392	-0.00075819	-1.6335	-0.00086055	-3.0727	-0.0016187	526.8200907147623	52.14	1.0886	49.327	48.947	50.035	-2.8129					50	21	3	0	0	0	0.027021	1	3526	3526		10.265	3.5297	1	53245	+		8759	29108	7154	7164	9759	9759					0.10399773171229754
ENLYDLIKL	9	Unmodified	_ENLYDLIKL_					0	0	0			REV__tr|A0A7D7A631|A0A7D7A631_9CLOTDeoR/GlpRtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08675PE=4SV=1	REV__tr|A0A7D7A631|A0A7D7A631_9CLOTDeoR/GlpRtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08675PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	560.7978515625	2	560.816064	1119.61758	-1.2213	-0.00068491	2.8081	0.0015748	1.5868	0.00088993	560.8180282104747	101.71	0.47392	100.18	99.951	100.42	-1.5211					15	8	2	0	0	0	0.027137	1	6952	6952		110.12	22.366	1	14416	+		8760	32649	7155	7165	9760	9760					0.06255165445986677
ENLYKPLPL	9	Unmodified	_ENLYKPLPL_					0	0	0			REV__tr|A0A7D6ZXZ9|A0A7D6ZXZ9_9CLOTBifunctionalproteinFolDOS=ClostridiumintestinaleOX=36845GN=folDPE=3SV=1	REV__tr|A0A7D6ZXZ9|A0A7D6ZXZ9_9CLOTBifunctionalproteinFolDOS=ClostridiumintestinaleOX=36845GN=folDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	543.80908203125	2	543.813325	1085.6121	0.13896	7.5568E-05	-4.2285	-0.0022995	-4.0896	-0.002224	543.8108855547393	114.35	1.3927	113.29	113	114.39	-1.055					65	27	3	0	0	0	0.064985	1	8455	8455		110.12	8.5192	1	149470	+		8761	32354	7156	7166	9761	9761					0.07271486654190085
ENLYKPLPL	9	Unmodified	_ENLYKPLPL_					0	0	0			REV__tr|A0A7D6ZXZ9|A0A7D6ZXZ9_9CLOTBifunctionalproteinFolDOS=ClostridiumintestinaleOX=36845GN=folDPE=3SV=1	REV__tr|A0A7D6ZXZ9|A0A7D6ZXZ9_9CLOTBifunctionalproteinFolDOS=ClostridiumintestinaleOX=36845GN=folDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.8101806640625	2	543.813325	1085.6121	-0.0069393	-3.7737E-06	-4.1435	-0.0022533	-4.1505	-0.0022571	543.8109541923094	114.68	1.5733	113.28	112.99	114.56	-1.3977					68	30	3	0	0	0	0.023304	1	10665	10665		143.11	13.424	1	191730	+		8762	32354	7156	7166	9762	9762					0.07271486654190085
ENLYKPLPL	9	Unmodified	_ENLYKPLPL_					0	0	0			REV__tr|A0A7D6ZXZ9|A0A7D6ZXZ9_9CLOTBifunctionalproteinFolDOS=ClostridiumintestinaleOX=36845GN=folDPE=3SV=1	REV__tr|A0A7D6ZXZ9|A0A7D6ZXZ9_9CLOTBifunctionalproteinFolDOS=ClostridiumintestinaleOX=36845GN=folDPE=3SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	543.813325	1085.6121	0.13896	7.5568E-05	-4.2285	-0.0022995	-4.0896	-0.002224	543.8108855547393	114.35	1.3927	113.29	113	114.39	-1.055	-0.015042	-9.0932E-05	NaN	143.11	65	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149470	+		8763	32354	7156	7166							0.07271486654190085
ENMDFFTLD	9	Unmodified	_ENMDFFTLD_					0	0	0		nc|ENSG00000158022|Q969Q1-2|TRIM63;ENSG00000158022|ENST00000374272|TRIM63	nc|ENSG00000158022|Q969Q1-2|TRIM63	nc|ENSG00000158022|Q969Q1-2|TRIM63	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.3287353515625	2	566.23679	1130.45903	-0.21405	-0.0001212	-3.5719	-0.0020225	-3.7859	-0.0021437	566.234654993146	55.068	0.93681	55.068	54.464	55.401	0					27	21	2	0	0	0	0.027462	1	4508	4508		30.318	12.953	1	129650			8764	5925	7157	7167	9763	9763					-0.10098496524597067
ENMKEYCKI	9	Unmodified	_ENMKEYCKI_					0	0	0			REV__tr|A0A553SUA9|A0A553SUA9_NIACISigma-70familyRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=CEQ21_06660PE=3SV=1	REV__tr|A0A553SUA9|A0A553SUA9_NIACISigma-70familyRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=CEQ21_06660PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	579.7860107421875	2	579.270109	1156.52567	-0.7545	-0.00043706	-3.9222	-0.002272	-4.6767	-0.0027091	579.2667906758427	58.758	1.1476	55.366	55.002	56.149	-3.392					63	22	5	0	0	0	0.027462	1	3961	3961		35.152	0.97948	1	217480	+		8765	31056	7158	7168	9764	9764					-0.046335842343523836
ENMKEYCKI	9	Unmodified	_ENMKEYCKI_					0	0	0			REV__tr|A0A553SUA9|A0A553SUA9_NIACISigma-70familyRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=CEQ21_06660PE=3SV=1	REV__tr|A0A553SUA9|A0A553SUA9_NIACISigma-70familyRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=CEQ21_06660PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	579.270109	1156.52567	-0.91999	-0.00053292	-5.0363	-0.0029174	-5.9563	-0.0034503	579.2673056968106	58.444	0.80218	55.664	55.335	56.137	-2.7801	0.14922	-0.00028381	NaN	35.152	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38086	+		8766	31056	7158	7168							-0.046335842343523836
ENMLDGILL	9	Unmodified	_ENMLDGILL_					0	0	0			REV__tr|A0A7D6VM25|A0A7D6VM25_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12305PE=4SV=1	REV__tr|A0A7D6VM25|A0A7D6VM25_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12305PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.81500244140625	2	509.267893	1016.52123	-0.67603	-0.00034428	-1.9705	-0.0010035	-2.6466	-0.0013478	509.26678068624665	74.627	0.57666	72.656	72.219	72.796	-1.9711					21	10	3	0	0	0	0.027137	1	6123	6123		98.629	13.714	1	52661	+		8767	31123	7159	7169	9765	9765					0.013632746144139674
ENMPCLVFCP	10	Unmodified	_ENMPCLVFCP_					0	0	0		L1PA3_dup2401|chr4:19593708-19594375:+|1.878456162297772|0.00841233674922|7.8|426.0|26|1|anti-sense	L1PA3_dup2401|chr4:19593708-19594375:+|1.878456162297772|0.00841233674922|7.8|426.0|26|1|anti-sense	L1PA3_dup2401|chr4:19593708-19594375:+|1.878456162297772|0.00841233674922|7.8|426.0|26|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.3169555664062	2	576.747956	1151.48136	2.375	0.0013697	1.8103	0.0010441	4.1852	0.0024138	576.7487436380555	116.16	0.50401	116.16	115.91	116.42	0					21	10	3	0	0	0	0.026752	1	13297	13297		27.882	0	1	249340			8768	14685	7160	7170	9766	9766					-0.08832311652167846
ENMRDIPTV	9	Unmodified	_ENMRDIPTV_					0	0	0		ENST00000467525.5_2_1:161493318-161493444:+|nuORF	ENST00000467525.5_2_1:161493318-161493444:+|nuORF	ENST00000467525.5_2_1:161493318-161493444:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.2789916992188	2	537.766049	1073.51754	-0.55211	-0.00029691	-2.1043	-0.0011316	-2.6564	-0.0014285	538.2655214348509	68.377	0.32549	68.377	68.114	68.44	0					9	7	2	0	0	0	0.027462	1	6438	6438		15.642	3.435	1	179060			8769	12313	7161	7171	9767	9767					-0.016273951594712344
ENMTTDVCAL	10	Unmodified	_ENMTTDVCAL_					0	0	0			REV__nc|ENSG00000182477|P59922|OR2B8P	REV__nc|ENSG00000182477|P59922|OR2B8P	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.299072265625	2	548.736099	1095.45765	0.98916	0.00054279	-1.2158	-0.00066717	-0.22667	-0.00012438	548.7350766685237	132.79	0.28906	132.79	132.6	132.89	0					8	5	2	0	0	0	0.027117	1	15431	15431		28.081	11.377	1	50788	+		8770	29040	7162	7172	9768	9768					-0.0862645388499459
ENNAQNAKV	9	Unmodified	_ENNAQNAKV_					0	0	0		nc|nan|Q9H6X5-2|C19orf44;ENSG00000105072|ENST00000221671|C19orf44	nc|nan|Q9H6X5-2|C19orf44	nc|nan|Q9H6X5-2|C19orf44	MULTI-SECPEP	OvCa9_classI_Rep2	2	494.7939147949219	2	494.246338	986.478122	0.30374	0.00015012	3.4575	0.0017088	3.7612	0.001859	494.24791429943974	95.696	1.5865	94.668	94.169	95.756	-1.0281					80	31	4	0	0	0	0.027462	1	8713	8713		35.152	8.4591	1	317390			8771	2420	7163	7173	9769	9769					-0.01565779118664068
ENNDKINLD	9	Unmodified	_ENNDKINLD_					0	0	0			REV__tr|A0A7D6VSY4|A0A7D6VSY4_9CLOTRibose-phosphatepyrophosphokinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05835PE=4SV=1	REV__tr|A0A7D6VSY4|A0A7D6VSY4_9CLOTRibose-phosphatepyrophosphokinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05835PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.810791015625	2	537.756735	1073.49892	0.2336	0.00012562	-0.017661	-9.4972E-06	0.21594	0.00011612	537.7568377713992	58.147	0.46388	58.147	57.899	58.363	0					15	10	2	0	0	0	0.027453	1	4930	4930		45.972	0.020292	1	1044200	+		8772	31554	7164	7174	9770	9770					-0.03489233529671765
ENNEEYGF	8	Unmodified	_ENNEEYGF_					0	0	0		tr|A0A7D6VQ58|A0A7D6VQ58_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18895PE=4SV=1	tr|A0A7D6VQ58|A0A7D6VQ58_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18895PE=4SV=1	tr|A0A7D6VQ58|A0A7D6VQ58_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18895PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.7595520019531	2	501.195979	1000.37741	-1.1056	-0.00055411	-2.0874	-0.0010462	-3.1929	-0.0016003	501.1947815105395	69.416	0.68036	65.935	65.713	66.393	-3.4812					21	13	2	0	0	0	0.028476	1	5222	5222		40.778	15.328	1	70920			8773	34821	7165	7175	9771	9771					-0.12276855892184813
ENNERSLRA	9	Unmodified	_ENNERSLRA_					0	0	0			REV__ENSG00000174799|ENST00000257287|CEP135	REV__ENSG00000174799|ENST00000257287|CEP135	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.3212280273438	2	544.775793	1087.53703	-1.3045	-0.00071067	3.0168	0.0016435	1.7123	0.00093281	544.7785556576151	70.072	0.45784	70.072	69.712	70.17	0					14	10	2	0	0	0	0.027433	1	6659	6659		54.776	8.8041	1	260160	+		8774	21853	7166	7176	9772	9772					-0.003233028243357694
ENNGRWIE	8	Unmodified	_ENNGRWIE_					0	0	0		ENSG00000140848|ENST00000290776|CPNE2;CPNE2|p.K516Rfs*22|1|0.41|ENSG00000140848|chr16:57147556-57147557|AA/-|frameshift_variant	ENSG00000140848|ENST00000290776|CPNE2	ENSG00000140848|ENST00000290776|CPNE2	MULTI-MSMS	OvCa9_classI_Rep3	3	509.2395324707031	2	509.241055	1016.46756	1.5833	0.00080629	-2.2382	-0.0011398	-0.65491	-0.00033351	509.2399801613584	60.9	1.9539	57.832	56.783	58.737	-3.0685					78	52	2	0	0	0	0.6962	1	2121	2121		44.117	10.601	1	24864			8775	4877	7167	7177	9773	9773					-0.04001761773088219
ENNIDLQVN	9	Unmodified	_ENNIDLQVN_					0	0	0		ENST00000463230.5_1_2:136362415-136362688:+|nuORF	ENST00000463230.5_1_2:136362415-136362688:+|nuORF	ENST00000463230.5_1_2:136362415-136362688:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.2833862304688	2	529.759278	1057.504	-0.65654	-0.00034781	0.48529	0.00025709	-0.17125	-9.0721E-05	529.7586476677778	90.429	0.30808	87.854	87.75	88.058	-2.575					6	5	2	0	0	0	0.027462	1	7803	7803		28.081	9.7571	1	7440.7			8776	12220	7168	7178	9774	9774					-0.022449296670401964
ENNIGLQT	8	Unmodified	_ENNIGLQT_					0	0	0			REV__ENST00000321892.8_1_17:65978893-65979136:+|nuORF	REV__ENST00000321892.8_1_17:65978893-65979136:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.9089660644531	2	444.724707	887.43486	0.58325	0.00025939	-0.41416	-0.00018419	0.16909	7.5197E-05	444.7243961982987	41.172	0.40576	41.172	40.969	41.375	0					15	8	2	0	0	0	0.028476	1	2532	2532		14.137	3.8719	1	227780	+		8777	24454	7169	7179	9775	9775					-0.01335968895955375
ENNITFMNP	9	Unmodified	_ENNITFMNP_					0	0	0			REV__CDH2|p.M741Vfs*10|1|0.42|ENSG00000170558|chr18:27983071-27983072|AT/-|frameshift_variant	REV__CDH2|p.M741Vfs*10|1|0.42|ENSG00000170558|chr18:27983071-27983072|AT/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.80615234375	2	540.244949	1078.47534	-0.39419	-0.00021296	-0.045307	-2.4477E-05	-0.43949	-0.00023743	540.2448161254504	84.658	1.0769	82.397	82.067	83.144	-2.261					31	21	2	0	0	0	0.027462	1	4982	4982		39.253	12.56	1	51428	+		8778	15768	7170	7180	9776	9776					-0.060753705678507686
ENNITFMNP	9	Unmodified	_ENNITFMNP_					0	0	0			REV__CDH2|p.M741Vfs*10|1|0.42|ENSG00000170558|chr18:27983071-27983072|AT/-|frameshift_variant	REV__CDH2|p.M741Vfs*10|1|0.42|ENSG00000170558|chr18:27983071-27983072|AT/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	540.244949	1078.47534	-1.5885	-0.00085816	1.3011	0.00070289	-0.28739	-0.00015526	540.2455633462845	84.229	0.93134	82.682	82.172	83.104	-1.5462	0.14269	0.00069979	NaN	22.58	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23258	+		8779	15768	7170	7180							-0.060753705678507686
ENNNEVLCVPA	11	Unmodified	_ENNNEVLCVPA_					0	0	0			REV__GBP6|p.T346Hfs*15|1|0.24|ENSG00000183347|chr1:89381853-89381854|-/C|frameshift_variant	REV__GBP6|p.T346Hfs*15|1|0.24|ENSG00000183347|chr1:89381853-89381854|-/C|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	601.8564453125	2	601.27952	1200.54449	1.4667	0.0008819	-1.3632	-0.00081964	0.10355	6.226E-05	601.2770926396918	143.91	0.6441	143.91	143.51	144.16	0					20	12	3	0	0	0	0.025638	1	16831	16831		17.468	0	1	53973	+		8780	22358	7171	7181	9777	9777					-0.04776331338939599
ENNTVKAKVK	10	Unmodified	_ENNTVKAKVK_					0	0	0			REV__tr|A0A553SN86|A0A553SN86_NIACITVP38/TMEM64familymembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_23985PE=3SV=1	REV__tr|A0A553SN86|A0A553SN86_NIACITVP38/TMEM64familymembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_23985PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.309814453125	2	565.830037	1129.64552	1.2111	0.00068529	0.41839	0.00023673	1.6295	0.00092202	565.8298252848284	98.111	0.91009	95.733	95.47	96.38	-2.3786					42	17	3	0	0	0	0.02663	1	8698	8698		51.193	0	1	93572	+		8781	30401	7172	7182	9778	9778					0.0858848842608495
ENNVFITLK	9	Unmodified	_ENNVFITLK_					0	0	0			REV__tr|A0A553SNW9|A0A553SNW9_NIACIDNApolymeraseIIIPolC-typeOS=NialliacirculansOX=1397GN=polCPE=3SV=1	REV__tr|A0A553SNW9|A0A553SNW9_NIACIDNApolymeraseIIIPolC-typeOS=NialliacirculansOX=1397GN=polCPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.83056640625	2	539.300581	1076.58661	1.8563	0.0010011	0.65689	0.00035426	2.5132	0.0013554	539.3003147226026	87.618	0.45947	87.618	87.378	87.838	0					18	10	2	0	0	0	0.027462	1	9311	9311		42.864	7.246	1	295040	+		8782	30468	7173	7183	9779	9779					0.05138012131760661
ENNVFITLK	9	Unmodified	_ENNVFITLK_					0	0	0			REV__tr|A0A553SNW9|A0A553SNW9_NIACIDNApolymeraseIIIPolC-typeOS=NialliacirculansOX=1397GN=polCPE=3SV=1	REV__tr|A0A553SNW9|A0A553SNW9_NIACIDNApolymeraseIIIPolC-typeOS=NialliacirculansOX=1397GN=polCPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	539.300581	1076.58661	1.012	0.0005458	-1.5094	-0.00081403	-0.49736	-0.00026823	539.2993787036919	88.625	0.83632	87.257	86.987	87.823	-1.3676	-0.18051	-0.0013062	NaN	42.864	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16661	+		8783	30468	7173	7183							0.05138012131760661
ENNVITIDL	9	Unmodified	_ENNVITIDL_					0	0	0		chr2:47375299-47378953|127|29.29|0.39|6.25|+|0|EPCAM,EPCAM|4;chr2:47377514-47378953|96|41.89|0.62|6.07|+|0|TE_info:AluSz6,AluSz6_dup5069,Alu,SINE,donor,-,47377230,47377514|None,EPCAM|4;ENSG00000119888|ENST00000263735|EPCAM;chr2:47386832-47387558|427|31.16|0.57|5.77|+|ENST00000456133|EPCAM,EPCAM	chr2:47375299-47378953|127|29.29|0.39|6.25|+|0|EPCAM,EPCAM|4	chr2:47375299-47378953|127|29.29|0.39|6.25|+|0|EPCAM,EPCAM|4	MULTI-MSMS	OvCa9_classI_Rep3	3	515.7750244140625	2	515.774396	1029.53424	0.45841	0.00023644	-0.83481	-0.00043058	-0.3764	-0.00019414	515.7739431910483	108.99	0.93954	107.79	107.46	108.4	-1.1978					47	17	3	0	0	0	0.13504	1	7814	7814		87.696	0	1	254800			8784	442	7174	7184	9780	9780					0.02065428998139396
ENNVITIDL	9	Unmodified	_ENNVITIDL_					0	0	0		chr2:47375299-47378953|127|29.29|0.39|6.25|+|0|EPCAM,EPCAM|4;chr2:47377514-47378953|96|41.89|0.62|6.07|+|0|TE_info:AluSz6,AluSz6_dup5069,Alu,SINE,donor,-,47377230,47377514|None,EPCAM|4;ENSG00000119888|ENST00000263735|EPCAM;chr2:47386832-47387558|427|31.16|0.57|5.77|+|ENST00000456133|EPCAM,EPCAM	chr2:47375299-47378953|127|29.29|0.39|6.25|+|0|EPCAM,EPCAM|4	chr2:47375299-47378953|127|29.29|0.39|6.25|+|0|EPCAM,EPCAM|4	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	515.774396	1029.53424	0.02014	1.0388E-05	-0.50256	-0.00025921	-0.48242	-0.00024882	515.7741016742568	109.64	0.94768	107.92	107.58	108.52	-1.7256	0.06288	0.00019897	NaN	87.696	43	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240840			8785	442	7174	7184							0.02065428998139396
ENPAVPLGFNL	11	Unmodified	_ENPAVPLGFNL_					0	0	0			REV__ENSG00000106571|ENST00000395925|GLI3	REV__ENSG00000106571|ENST00000395925|GLI3	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.7418823242188	2	585.811313	1169.60807	-0.20198	-0.00011832	-3.6826	-0.0021573	-3.8846	-0.0022756	585.8091118092524	62.187	0.4245	62.187	61.953	62.378	0					20	9	3	0	0	0	0.025714	1	5527	5527		46.457	18.575	1	472480	+		8786	17810	7175	7185	9781	9781					0.03005397160495704
ENPDEYTFSD	10	Unmodified	_ENPDEYTFSD_					0	0	0			REV__EPHB4|p.P593S|1|0.12|ENSG00000196411|chr7:100813188-100813188|G/A|missense_variant	REV__EPHB4|p.P593S|1|0.12|ENSG00000196411|chr7:100813188-100813188|G/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	405.2392883300781	3	406.159536	1215.45678	0.92843	0.00037709	2.5764	0.0010464	3.5049	0.0014235	406.49565999087366	46.618	0.51599	43.545	43.294	43.81	-3.0724					12	9	2	0	0	0	0.027115	1	2428	2428		13.508	0	1	7717.5	+		8787	28112	7176	7186	9782	9782					-0.14233253728707496
ENPEGLGPLQL	11	Unmodified	_ENPEGLGPLQL_					0	0	0		ENST00000585457.5_1_17:42253853-42254417:-|nuORF	ENST00000585457.5_1_17:42253853-42254417:-|nuORF	ENST00000585457.5_1_17:42253853-42254417:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	584.3306884765625	2	583.806228	1165.5979	-0.23613	-0.00013785	-0.051399	-3.0007E-05	-0.28753	-0.00016786	584.3065562534201	113.47	0.65444	112.39	111.96	112.61	-1.0753					18	12	2	0	0	0	0.02537	1	8298	8298		48.602	9.3487	1	29612			8788	14033	7177	7187	9783	9783					0.02172789435235245
ENPGCFLLH	9	Unmodified	_ENPGCFLLH_					0	0	0			REV__nc|ENSG00000186092|Q8NH21|OR4F5	REV__nc|ENSG00000186092|Q8NH21|OR4F5	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7631225585938	2	515.244752	1028.47495	-0.50608	-0.00026076	-2.045	-0.0010537	-2.551	-0.0013144	515.2439157986853	60.134	0.35948	60.134	59.918	60.277	0					13	8	2	0	0	0	0.027462	1	5221	5221		24.203	4.206	1	111780	+		8789	22555	7178	7188	9784	9784					-0.038147454970157924
ENPHYCLTP	9	Unmodified	_ENPHYCLTP_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;nc|ENSG00000116641|Q96N67-7|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.272216796875	2	537.239667	1072.46478	3.7451	0.002012	-1.2099	-0.00065003	2.5352	0.001362	537.2390111458282	88.419	0.46504	88.419	88.13	88.595	0					21	10	3	0	0	0	0.027462	1	9407	9407		25.574	7.312	1	403210			8790	3189	7179	7189	9785	9785					-0.06855353222272242
ENPIYTIEI	9	Unmodified	_ENPIYTIEI_					0	0	0		tr|A0A553SJ46|A0A553SJ46_NIACISHOCTdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16060PE=4SV=1	tr|A0A553SJ46|A0A553SJ46_NIACISHOCTdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16060PE=4SV=1	tr|A0A553SJ46|A0A553SJ46_NIACISHOCTdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16060PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	546.2874755859375	2	546.284597	1090.55464	-0.56606	-0.00030923	3.5606	0.0019451	2.9945	0.0016359	546.2863258210423	137.01	1.2304	136.78	136.4	137.63	-0.22697					54	25	3	0	0	0	0.42576	1	13642	13642		49.536	1.8787	1	145390			8791	33463	7180	7190	9786	9786					0.012985996579345738
ENPIYVEQL	9	Unmodified	_ENPIYVEQL_					0	0	0			REV__tr|A0A7D6ZY82|A0A7D6ZY82_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01155PE=4SV=1	REV__tr|A0A7D6ZY82|A0A7D6ZY82_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01155PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	552.7810668945312	2	552.782222	1103.54989	0.0023486	1.2982E-06	-0.10093	-5.579E-05	-0.098578	-5.4492E-05	552.7820322191556	115.98	1.1882	115.87	115.49	116.68	-0.11777					57	23	3	0	0	0	0.37135	1	11059	11059		54.776	3.2486	1	146950	+		8792	32361	7181	7191	9787	9787					0.0022571551519376953
ENPLRYVP	8	Unmodified	_ENPLRYVP_					0	0	0			REV__nc|ENSG00000111728|Q92185-2|ST8SIA1	REV__nc|ENSG00000111728|Q92185-2|ST8SIA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.7867431640625	2	494.266542	986.51853	2.439	0.0012055	-1.2495	-0.0006176	1.1895	0.00058793	494.26585325518704	75.273	0.43884	75.273	75.005	75.444	0					19	10	3	0	0	0	0.028476	1	7453	7453		16.473	5.6076	1	333240	+		8793	18054	7182	7192	9788	9788					0.024731872717552505
ENPQQTDI	8	Unmodified	_ENPQQTDI_					0	0	0			REV__ACSBG1|p.Q275E|1|0.16|ENSG00000103740|chr15:78182537-78182537|G/C|missense_variant	REV__ACSBG1|p.Q275E|1|0.16|ENSG00000103740|chr15:78182537-78182537|G/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.28472900390625	2	472.719621	943.42469	1.1616	0.00054912	-1.4687	-0.00069431	-0.30713	-0.00014519	472.7187241106865	89.423	1.0877	86.833	86.398	87.485	-2.5902					36	21	3	0	0	0	0.028476	1	7635	7635		54.776	24.273	1	47892	+		8794	15558	7183	7193	9789	9789					-0.04928576621182401
ENPQQTDI	8	Unmodified	_ENPQQTDI_					0	0	0			REV__ACSBG1|p.Q275E|1|0.16|ENSG00000103740|chr15:78182537-78182537|G/C|missense_variant	REV__ACSBG1|p.Q275E|1|0.16|ENSG00000103740|chr15:78182537-78182537|G/C|missense_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	472.719621	943.42469	0.24113	0.00011399	-0.63584	-0.00030057	-0.3947	-0.00018658	472.71915672923694	88.682	0.82651	86.551	86.315	87.141	-2.1309	-0.14101	0.00050452	NaN	45.972	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64622	+		8795	15558	7183	7193							-0.04928576621182401
ENPYFKNKA	9	Unmodified	_ENPYFKNKA_					0	0	0		ENST00000437270.1_1_9:140535772-140535991:-|nuORF	ENST00000437270.1_1_9:140535772-140535991:-|nuORF	ENST00000437270.1_1_9:140535772-140535991:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	556.3341064453125	2	555.782556	1109.55056	0.044396	2.4675E-05	-2.9041	-0.001614	-2.8597	-0.0015894	555.7806283981365	63.411	1.3059	59.936	59.625	60.931	-3.475					51	26	3	0	0	0	0.027418	1	4541	4541		44.377	8.7589	1	272210			8796	11886	7184	7194	9790	9790					0.00016554954913772235
ENQALYSIPL	10	Unmodified	_ENQALYSIPL_					0	0	0		nc|ENSG00000198862|O94822-3|LTN1;ENSG00000198862|ENST00000361371|LTN1	nc|ENSG00000198862|O94822-3|LTN1	nc|ENSG00000198862|O94822-3|LTN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.2855834960938	2	574.303321	1146.59209	1.1624	0.0006676	0.27186	0.00015613	1.4343	0.00082372	574.3042354718331	146.89	0.5891	146.89	146.62	147.21	0					21	11	3	0	0	0	0.026624	1	17187	17187		54.722	0	1	40182			8797	15262	7185	7195	9791	9791					0.024656909235773128
ENQASICQL	9	Unmodified	_ENQASICQL_					0	0	0		ANKLE2|p.R560Kfs*4|1|0.14|ENSG00000176915|chr12:132735427-132735428|-/T|frameshift_variant;nc|ENSG00000176915|Q86XL3-2|ANKLE2;DHX30-ANKLE2|1|fusion;ENSG00000176915|ENST00000357997|ANKLE2	ANKLE2|p.R560Kfs*4|1|0.14|ENSG00000176915|chr12:132735427-132735428|-/T|frameshift_variant	ANKLE2|p.R560Kfs*4|1|0.14|ENSG00000176915|chr12:132735427-132735428|-/T|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.2257080078125	2	503.237124	1004.45969	1.1051	0.00055613	-1.9444	-0.00097851	-0.83932	-0.00042238	503.2361233701756	138.9	0.96478	138.9	138.64	139.61	0					36	19	3	0	0	0	0.027411	1	16200	16200		84.916	8.1414	1	280430			8798	92	7186	7196	9792	9792					-0.04235657084882405
ENQESTPVVI	10	Unmodified	_ENQESTPVVI_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-12|FN1;FN1-SEC31A|2|fusion;FN1|p.E1684*|1|0.04|ENSG00000115414|chr2:215380922-215380923|-/A|frameshift_variant;FN1-SEC31A|1|fusion	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.8031616210938	2	558.282586	1114.55062	0.017386	9.7064E-06	0.25321	0.00014136	0.27059	0.00015107	558.2826782260545	33.521	0.24792	33.521	33.384	33.632	0					7	4	2	0	0	0	0.026734	1	1558	1558		47.657	4.7931	1	31658			8799	3093	7187	7197	9793	9793					-0.0020748983574776503
ENQFVAWVI	9	Unmodified	_ENQFVAWVI_					0	0	0			REV__ENST00000560489.2_1_15:49657539-49658184:-|nuORF	REV__ENST00000560489.2_1_15:49657539-49658184:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.8102416992188	2	553.287474	1104.5604	0.098271	5.4372E-05	-3.5867	-0.0019845	-3.4885	-0.0019301	553.2852079969057	98.375	1.4336	95.996	95.725	97.158	-2.3786					45	27	2	0	0	0	0.027449	1	8784	8784		40.573	11.423	1	168410	+		8800	27619	7188	7198	9794	9794					0.012297429602767807
ENQFVAWVI	9	Unmodified	_ENQFVAWVI_					0	0	0			REV__ENST00000560489.2_1_15:49657539-49658184:-|nuORF	REV__ENST00000560489.2_1_15:49657539-49658184:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	553.287474	1104.5604	2.2753	0.0012589	-10.005	-0.0055356	-7.7296	-0.0042767	553.2818535027526	95.883	0.67436	95.883	95.451	96.126	0	-0.14202	-0.0060507	NaN	31.955	38	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1847800	+		8801	27619	7188	7198							0.012297429602767807
ENQIKKFLKL	10	Unmodified	_ENQIKKFLKL_					0	0	0		tr|A0A7D7AB36|A0A7D7AB36_9CLOTSugarkinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13815PE=3SV=1	tr|A0A7D7AB36|A0A7D7AB36_9CLOTSugarkinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13815PE=3SV=1	tr|A0A7D7AB36|A0A7D7AB36_9CLOTSugarkinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13815PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	420.9275817871094	3	420.927329	1259.76016	-0.40847	-0.00017194	0.29792	0.0001254	-0.11055	-4.6533E-05	420.92744774972056	69.031	2.0508	66.41	66.118	68.168	-2.6203					127	40	5	0	0	0	0.5635	1	5465	5465		46.457	1.8173	1	1205300			8802	36213	7189	7199	9795	9795					0.14066797908026274
ENQKAIFSI	9	Unmodified	_ENQKAIFSI_					0	0	0			REV__tr|A0A553SHR0|A0A553SHR0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13420PE=4SV=1	REV__tr|A0A553SHR0|A0A553SHR0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13420PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	525.2844848632812	2	525.284931	1048.55531	-0.52192	-0.00027415	-0.086001	-4.5175E-05	-0.60792	-0.00031933	525.2848982861796	114.53	2.2405	113.48	112.84	115.08	-1.055					123	44	4	0	0	0	0.2784	1	8502	8502		65.465	9.0316	1	908300	+		8803	29826	7190	7200	9796	9796					0.032974390976505674
ENQKVLPLL	9	Unmodified	_ENQKVLPLL_					0	0	0		ENST00000542652.6_1_18:5434093-5466319:-|nuORF	ENST00000542652.6_1_18:5434093-5466319:-|nuORF	ENST00000542652.6_1_18:5434093-5466319:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	527.7646484375	2	527.318774	1052.623	-1.881	-0.00099188	0.40724	0.00021475	-1.4737	-0.00077713	527.3189058323061	92.683	1.4606	90.721	90.423	91.884	-1.9617					53	29	2	0	0	0	0.027462	1	5852	5852		21.686	0	1	517850			8804	13481	7191	7201	9797	9797					0.09878889028482263
ENQKVLPLL	9	Unmodified	_ENQKVLPLL_					0	0	0		ENST00000542652.6_1_18:5434093-5466319:-|nuORF	ENST00000542652.6_1_18:5434093-5466319:-|nuORF	ENST00000542652.6_1_18:5434093-5466319:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	527.318774	1052.623	0.45359	0.00023919	-1.1083	-0.00058443	-0.65471	-0.00034524	527.318097467026	91.983	1.3665	90.748	90.272	91.639	-1.2355	0.039516	-0.00064279	NaN	35.152	48	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	285400			8805	13481	7191	7201							0.09878889028482263
ENQLKNEMQ	9	Unmodified	_ENQLKNEMQ_					0	0	0		nc|ENSG00000152969|Q96N16|JAKMIP1;ENSG00000152969|ENST00000409021|JAKMIP1;nc|ENSG00000152969|Q96N16-6|JAKMIP1;nc|ENSG00000152969|Q96N16-7|JAKMIP1;nc|ENSG00000152969|Q96N16-5|JAKMIP1;ENST00000473053.5_1_4:6055704-6058424:-|nuORF	nc|ENSG00000152969|Q96N16|JAKMIP1	nc|ENSG00000152969|Q96N16|JAKMIP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.8133544921875	2	567.266413	1132.51827	0.84482	0.00047924	3.4997	0.0019852	4.3445	0.0024645	567.2682597529846	90.282	1.3793	87.707	87.45	88.829	-2.575					41	26	3	0	0	0	0.02704	1	7886	7886		90.601	30.483	1	42584			8806	5652	7192	7202	9798	9798					-0.0426860051040876
ENQLPAVLL	9	Unmodified	_ENQLPAVLL_					0	0	0			REV__ENST00000418040.5_1_7:134331590-134346220:+|nuORF	REV__ENST00000418040.5_1_7:134331590-134346220:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.78948974609375	2	498.78985	995.565146	-0.69611	-0.00034721	0.14781	7.3725E-05	-0.5483	-0.00027349	498.7898766980179	115.24	3.0674	115.12	114.7	117.77	-0.11777					207	61	7	0	0	0	0.29717	1	10962	10962		63.306	3.0123	1	2910400	+		8807	25565	7193	7203	9799	9799					0.06718627103043673
ENQNALPP	8	Unmodified	_ENQNALPP_					0	0	0			REV__ARID5B|p.M861Cfs*21|1|0.05|ENSG00000150347|chr10:62092044-62092044|A/-|frameshift_variant	REV__ARID5B|p.M861Cfs*21|1|0.05|ENSG00000150347|chr10:62092044-62092044|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	441.7861328125	2	441.719424	881.424296	0.041381	1.8279E-05	2.0255	0.00089471	2.0669	0.00091299	441.71907863625677	102.84	1.0996	101.32	100.95	102.05	-1.5211					43	20	4	0	0	0	0.028476	1	7129	7129		13.775	1.5685	1	33743	+		8808	15659	7194	7204	9800	9800					-0.021159515503995863
ENQRALVL	8	Unmodified	_ENQRALVL_					0	0	0			REV__ADCY4|p.T926Afs*10|1|0.07|ENSG00000129467|chr14:24319388-24319394|CGATGGT/-|frameshift_variant	REV__ADCY4|p.T926Afs*10|1|0.07|ENSG00000129467|chr14:24319388-24319394|CGATGGT/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.7733459472656	2	471.771991	941.529429	0.70033	0.0003304	-0.92794	-0.00043778	-0.22761	-0.00010738	471.77151465294384	65.014	2.1826	61.528	60.872	63.054	-3.4854					101	44	4	0	0	0	0.57734	1	4684	4684		68.787	2.9837	1	2027800	+		8809	15570	7195	7205	9801	9801					0.056325896460293734
ENQVPVWVP	9	Unmodified	_ENQVPVWVP_					0	0	0		HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|20|1|sense	HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|20|1|sense	HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|20|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.8379516601562	2	534.279649	1066.54475	2.3527	0.001257	3.0737	0.0016422	5.4264	0.0028992	534.281133920658	84.762	0.74031	84.762	84.512	85.252	0					30	17	3	0	0	0	0.027462	1	8856	8856		27.882	0	1	998650			8810	14466	7196	7206	9802	9802					0.014134564432424668
ENREAGIVF	9	Unmodified	_ENREAGIVF_					0	0	0		nc|ENSG00000162843|B1ANS9-2|WDR64;nc|ENSG00000162843|B1ANS9|WDR64;ENSG00000162843|ENST00000437684|WDR64;EXO1-WDR64|1|fusion	nc|ENSG00000162843|B1ANS9-2|WDR64	nc|ENSG00000162843|B1ANS9-2|WDR64	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.6851196289062	2	517.766906	1033.51926	-0.34387	-0.00017805	1.1817	0.00061185	0.83784	0.00043381	517.7668561073638	57.908	0.95569	54.563	54.291	55.247	-3.3449					42	18	3	0	0	0	0.027462	1	3827	3827		31.53	0	1	280850			8811	6239	7197	7207	9803	9803					0.0038398192079966975
ENRGYIGTL	9	Unmodified	_ENRGYIGTL_					0	0	0			REV__tr|A0A7D7A3K2|A0A7D7A3K2_9CLOTDUF4446familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23950PE=4SV=1	REV__tr|A0A7D7A3K2|A0A7D7A3K2_9CLOTDUF4446familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23950PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.9540710449219	2	511.766906	1021.51926	-1.1845	-0.00060616	-0.33251	-0.00017017	-1.517	-0.00077633	511.76724430089627	48.664	0.72865	45.556	45.348	46.076	-3.1077					27	13	3	0	0	0	0.027433	1	2707	2707		45.972	5.1941	1	34740	+		8812	32588	7198	7208	9804	9804					0.009359819208270892
ENRIAPLAW	9	Unmodified	_ENRIAPLAW_					0	0	0		nc|ENSG00000106823|O94769-2|ECM2;ENSG00000106823|ENST00000344604|ECM2	nc|ENSG00000106823|O94769-2|ECM2	nc|ENSG00000106823|O94769-2|ECM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.7743530273438	2	535.293091	1068.57163	-0.71845	-0.00038458	-0.7471	-0.00039992	-1.4655	-0.0007845	535.2925126589207	64.222	0.98079	64.222	63.894	64.875	0					45	23	2	0	0	0	0.027449	1	5809	5809		31.955	0	1	496900			8813	2576	7199	7209	9805	9805					0.04008565054414248
ENRKKSIV	8	Unmodified	_ENRKKSIV_					0	0	0			REV__nc|ENSG00000165995|Q08289-6|CACNB2	REV__nc|ENSG00000165995|Q08289-6|CACNB2	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.2933654785156	2	487.293091	972.571629	-0.15015	-7.3167E-05	-0.30825	-0.00015021	-0.4584	-0.00022337	487.2928615392461	39.498	1.8328	36.572	36.296	38.129	-2.9264					81	35	4	0	0	0	0.64026	1	1634	1634		55.504	9.5523	1	525940	+		8814	21145	7200	7210	9806	9806					0.08424565054428967
ENRLGKTF	8	Unmodified	_ENRLGKTF_					0	0	0			REV__ENSG00000154358|ENST00000680850|OBSCN	REV__ENSG00000154358|ENST00000680850|OBSCN	MULTI-MSMS	OvCa99_classI_Rep5	1	482.7659912109375	2	482.764166	963.513779	-0.52743	-0.00025462	3.4366	0.0016591	2.9092	0.0014045	482.76570436001924	28.732	3.4175	28.732	28.439	31.857	0					119	68	4	0	0	0	0.57336	2	972	972;995		69.628	7.5202	1	368670	+		8815	20380	7201	7211	9807;9808	9807					0.030563031290057552
ENRPGFLL	8	Unmodified	_ENRPGFLL_					0	0	0			REV__sp|Q6SW50|CVC1_HCMVMCapsidvertexcomponent1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=CVC1PE=3SV=1	REV__sp|Q6SW50|CVC1_HCMVMCapsidvertexcomponent1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=CVC1PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.7946472167969	2	473.261259	944.507966	0.47322	0.00022396	0.21869	0.0001035	0.69191	0.00032745	473.26119372405196	46.065	0.87411	46.065	45.582	46.456	0					32	19	2	0	0	0	0.028476	1	3180	3180		42.396	3.59	1	272790	+		8816	29435	7202	7212	9809	9809					0.03349204617347823
ENRQVILL	8	Unmodified	_ENRQVILL_					0	0	0		ENSG00000173404|ENST00000310227|INSM1	ENSG00000173404|ENST00000310227|INSM1	ENSG00000173404|ENST00000310227|INSM1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.2691650390625	2	492.795466	983.57638	-0.82009	-0.00040413	1.2377	0.00060992	0.41758	0.00020578	492.79582069639497	44.895	0.98383	41.857	41.663	42.647	-3.0385					24	18	2	0	0	0	0.028476	1	2314	2314		28.254	6.5519	1	94127			8817	7372	7203	7213	9810	9810					0.08393449197183145
ENRSVLKLT	9	Unmodified	_ENRSVLKLT_					0	0	0			REV__ENSG00000174428|ENST00000472837|GTF2IRD2B	REV__ENSG00000174428|ENST00000472837|GTF2IRD2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.29052734375	2	530.31148	1058.60841	-0.2644	-0.00014021	0.47587	0.00025236	0.21147	0.00011214	530.3118061544909	58.784	0.32037	58.784	58.572	58.892	0					13	7	2	0	0	0	0.027462	1	5028	5028		30.318	3.6248	1	362730	+		8818	21830	7204	7214	9811	9811					0.08144816880303551
ENRTLQLIL	9	Unmodified	_ENRTLQLIL_					0	0	0		ENST00000338272.8_1_1:109638293-109638542:+|nuORF	ENST00000338272.8_1_1:109638293-109638542:+|nuORF	ENST00000338272.8_1_1:109638293-109638542:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.3280029296875	2	550.327131	1098.63971	0.71282	0.00039229	-2.7777	-0.0015287	-2.0649	-0.0011364	550.3256260191897	86.705	1.5914	84.078	83.613	85.204	-2.6269					98	31	4	0	0	0	0.38969	1	7402	7402		52.937	3.4952	1	3279500			8819	10535	7205	7215	9812	9812					0.09433389914443069
ENRVGLNL	8	Unmodified	_ENRVGLNL_					0	0	0		nc|ENSG00000115234|Q15036-2|SNX17;ENSG00000115234|ENST00000233575|SNX17;FOSL2-SNX17|1|fusion;ENST00000440760.5_1_2:27594325-27599583:+|nuORF	nc|ENSG00000115234|Q15036-2|SNX17	nc|ENSG00000115234|Q15036-2|SNX17	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.2405090332031	2	457.756341	913.498129	-0.44871	-0.0002054	0.18736	8.5765E-05	-0.26135	-0.00011963	457.75630410378955	52.48	1.0521	49.272	48.994	50.046	-3.208					33	20	2	0	0	0	0.028476	1	3202	3202		32.812	11.865	1	104520			8820	3074	7206	7216	9813	9813					0.03792016611953386
ENRVGLNL	8	Unmodified	_ENRVGLNL_					0	0	0		nc|ENSG00000115234|Q15036-2|SNX17;ENSG00000115234|ENST00000233575|SNX17;FOSL2-SNX17|1|fusion;ENST00000440760.5_1_2:27594325-27599583:+|nuORF	nc|ENSG00000115234|Q15036-2|SNX17	nc|ENSG00000115234|Q15036-2|SNX17	MULTI-MATCH	OvCa9_classI_Rep2	2		2	457.756341	913.498129	-0.42391	-0.00019405	0.83742	0.00038334	0.41352	0.00018929	457.756367921766	52.352	0.74045	49.54	49.246	49.986	-2.8129	0.13379	0.0005119	NaN	32.812	22	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18269			8821	3074	7206	7216							0.03792016611953386
ENRVHITSQN	10	Unmodified	_ENRVHITSQN_					0	0	0		tr|A0A7D6ZPY2|A0A7D6ZPY2_9CLOTCarbamoylphosphatesynthasesmallchainOS=ClostridiumintestinaleOX=36845GN=carAPE=3SV=1	tr|A0A7D6ZPY2|A0A7D6ZPY2_9CLOTCarbamoylphosphatesynthasesmallchainOS=ClostridiumintestinaleOX=36845GN=carAPE=3SV=1	tr|A0A7D6ZPY2|A0A7D6ZPY2_9CLOTCarbamoylphosphatesynthasesmallchainOS=ClostridiumintestinaleOX=36845GN=carAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	599.3028564453125	2	599.302175	1196.5898	-0.77438	-0.00046409	3.8166	0.0022873	3.0422	0.0018232	599.3042843627973	114.94	1.1851	114.82	114.6	115.79	-0.11777					44	23	3	0	0	0	0.69928	1	10963	10963		30.569	1.3988	1	174640			8822	35694	7207	7217	9814	9814					-0.0006334476152005664
ENRVMKLAV	9	Unmodified	_ENRVMKLAV_					0	0	0			REV__nc|ENSG00000127334|Q92630-2|DYRK2;REV__nc|ENSG00000143479|O43781-2|DYRK3	REV__nc|ENSG00000127334|Q92630-2|DYRK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.29052734375	2	530.302601	1058.59065	-0.49521	-0.00026261	1.505	0.0007981	1.0098	0.00053549	530.302880495709	59.072	0.37649	59.072	58.852	59.228	0					20	9	3	0	0	0	0.027462	1	5028	5028		26.693	0	1	1393000	+		8823	18811;19845	7208	7218	9815	9815					0.06369778353814581
ENRWLGPRIT	10	Unmodified	_ENRWLGPRIT_					0	0	0		nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	621.8821411132812	2	621.341104	1240.66765	1.2033	0.00074765	2.5814	0.0016039	3.7847	0.0023516	621.3426647167269	130.43	0.9534	130.43	130.01	130.96	0					42	19	3	0	0	0	0.027115	1	15190	15190		2.1804	0	1	203220			8824	859	7209	7219	9816	9816					0.056947128945239456
ENSEGKQE	8	Unmodified	_ENSEGKQE_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OvCa99_classI_Rep5	1	460.70172119140625	2	460.701429	919.388304	0.14947	6.8859E-05	0.61366	0.00028271	0.76312	0.00035157	460.701649762724	20.95	0.72861	20.95	20.776	21.504	0					35	19	2	0	0	0	0.48084	1	69	69		79.451	5.196	1	1022200			8825	5793	7210	7220	9817	9817					-0.07461453517885275
ENSGAQPLLF	10	Unmodified	_ENSGAQPLLF_					0	0	0			REV__tr|A0A553SRD2|A0A553SRD2_NIACIbeta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_00865PE=3SV=1	REV__tr|A0A553SRD2|A0A553SRD2_NIACIbeta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_00865PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.826171875	2	538.274564	1074.53457	-1.5954	-0.00085879	4.3574	0.0023455	2.762	0.0014867	538.2766811557221	93.08	0.64928	90.573	90.362	91.012	-2.5072					20	12	2	0	0	0	0.026551	1	8131	8131		51.193	18.38	1	66619	+		8826	30722	7211	7221	9818	9818					0.0002884871798869426
ENSGNTINNI	10	Unmodified	_ENSGNTINNI_					0	0	0			REV__tr|A0A7D6ZIP8|A0A7D6ZIP8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07925PE=4SV=1	REV__tr|A0A7D6ZIP8|A0A7D6ZIP8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07925PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.775146484375	2	538.25436	1074.49417	2.32	0.0012488	2.8299	0.0015232	5.1499	0.0027719	538.755767683601	76.18	0.20866	76.18	76.115	76.324	0					6	4	2	0	0	0	0.026916	1	7642	7642		23.378	4.0179	1	213270	+		8827	32065	7212	7222	9819	9819					-0.040101176724192555
ENSGYLEIT	9	Unmodified	_ENSGYLEIT_					0	0	0		nc|ENSG00000170835|P19835-2|CEL;ENSG00000170835|ENST00000372080|CEL	nc|ENSG00000170835|P19835-2|CEL	nc|ENSG00000170835|P19835-2|CEL	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.94091796875	2	513.242929	1024.47131	-0.23967	-0.00012301	-0.32864	-0.00016867	-0.56831	-0.00029168	513.2427814782617	60.419	0.6205	60.419	60.195	60.816	0					34	14	4	0	0	0	0.027447	1	5282	5282		24.519	0	1	1196700			8828	7141	7213	7223	9820	9820					-0.03995136789922071
ENSIKLTSVV	10	Unmodified	_ENSIKLTSVV_					0	0	0		ENSG00000170989|ENST00000305352|S1PR1	ENSG00000170989|ENST00000305352|S1PR1	ENSG00000170989|ENST00000305352|S1PR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.7913208007812	2	545.311146	1088.60774	-1.3279	-0.0007241	3.0289	0.0016517	1.701	0.0009276	545.3125943329331	53.598	0.92091	50.381	50.088	51.009	-3.2169					31	17	3	0	0	0	0.02658	1	3343	3343		37.812	0	1	69919			8829	7160	7214	7224	9821	9821					0.06697977440603609
ENSISGDKV	9	Unmodified	_ENSISGDKV_					0	0	0		nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.2837219238281	2	474.735271	947.45599	0.1126	5.3453E-05	3.6821	0.001748	3.7947	0.0018015	474.73545527328986	52.935	0.43382	52.935	52.697	53.131	0					15	9	2	0	0	0	0.027425	1	4201	4201		28.081	7.1346	1	188090			8830	14984	7215	7225	9822	9822					-0.01984003587085681
ENSKNPQLL	9	Unmodified	_ENSKNPQLL_					0	0	0		ENST00000263253.8_1_22:41575809-41575968:+|nuORF	ENST00000263253.8_1_22:41575809-41575968:+|nuORF	ENST00000263253.8_1_22:41575809-41575968:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.3095703125	2	521.780013	1041.54547	-1.2819	-0.00066884	-2.2175	-0.0011571	-3.4994	-0.0018259	522.2810464902343	53.748	1.1252	50.501	50.058	51.183	-3.2474					31	21	3	0	0	0	0.027402	1	3322	3322		76.774	0	1	33240			8831	9911	7216	7226	9823	9823					0.026362510922808724
ENSKNPQLL	9	Unmodified	_ENSKNPQLL_					0	0	0		ENST00000263253.8_1_22:41575809-41575968:+|nuORF	ENST00000263253.8_1_22:41575809-41575968:+|nuORF	ENST00000263253.8_1_22:41575809-41575968:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.3095703125	2	521.780013	1041.54547	-1.3091	-0.00068307	1.2872	0.00067161	-0.021958	-1.1457E-05	521.7805113903303	54.211	0.87152	50.963	50.619	51.491	-3.2474					22	16	2	0	0	0	0.027402	1	3322	3322		76.774	0	1	57117			8832	9911	7216	7226	9824	9824					0.026362510922808724
ENSLADFSL	9	Unmodified	_ENSLADFSL_					0	0	0		nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-7|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.7900390625	2	498.237647	994.460741	1.1897	0.00059274	-1.4065	-0.00070075	-0.21678	-0.00010801	498.2368658603992	111.58	0.73021	111.58	111.33	112.06	0					29	15	3	0	0	0	0.027461	1	12728	12728		49.442	8.6634	1	250020			8833	15118	7217	7227	9825	9825					-0.03671119444334181
ENSLFKENTL	10	Unmodified	_ENSLFKENTL_					0	0	0			REV__tr|A0A7D6ZWQ3|A0A7D6ZWQ3_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18855PE=4SV=1	REV__tr|A0A7D6ZWQ3|A0A7D6ZWQ3_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18855PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	598.3445434570312	2	597.803685	1193.59282	1.8185	0.0010871	-1.3889	-0.00083029	0.42963	0.00025683	597.8027156434039	85.648	1.0859	83.002	82.755	83.841	-2.6463					54	21	4	0	0	0	0.026602	1	7263	7263		65.465	25.407	1	203810	+		8834	32298	7218	7228	9826	9826					0.003764855726103633
ENSLFKENTL	10	Unmodified	_ENSLFKENTL_					0	0	0			REV__tr|A0A7D6ZWQ3|A0A7D6ZWQ3_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18855PE=4SV=1	REV__tr|A0A7D6ZWQ3|A0A7D6ZWQ3_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18855PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	597.803685	1193.59282	0.16459	9.8393E-05	0.93072	0.00055639	1.0953	0.00065478	597.804370119316	85.307	1.5884	83.087	82.548	84.137	-2.2204	0.187	4.8373E-05	NaN	65.465	68	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	290430	+		8835	32298	7218	7228							0.003764855726103633
ENSNCEMR	8	Unmodified	_ENSNCEMR_					0	0	0		ENSG00000112761|ENST00000368666|CCN6;nc|ENSG00000112761|O95389-2|CCN6	ENSG00000112761|ENST00000368666|CCN6	ENSG00000112761|ENST00000368666|CCN6	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.72412109375	2	491.689484	981.364414	-1.0433	-0.000513	-1.7124	-0.00084197	-2.7557	-0.001355	491.68889288514873	37.182	0.27575	37.182	37.069	37.344	0					8	5	2	0	0	0	0.028476	1	2023	2023		15.642	0	1	28876			8836	2925	7219	7229	9827	9827					-0.12701333547568083
ENSRLVGFF	9	Unmodified	_ENSRLVGFF_					0	0	0			REV__nc|ENSG00000164707|Q9UKG4|SLC13A4	REV__nc|ENSG00000164707|Q9UKG4|SLC13A4	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.8314819335938	2	534.777274	1067.53999	-0.29475	-0.00015763	3.127	0.0016723	2.8323	0.0015146	534.7788882461195	35.856	0.27803	35.856	35.661	35.939	0					6	5	2	0	0	0	0.027441	1	1826	1826		32.812	0	1	20185	+		8837	16090	7220	7230	9828	9828					0.00892572300494976
ENSSSDSTV	9	Unmodified	_ENSSSDSTV_					0	0	0		ENST00000485126.1_1_3:85008763-85009494:+|nuORF	ENST00000485126.1_1_3:85008763-85009494:+|nuORF	ENST00000485126.1_1_3:85008763-85009494:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	462.77545166015625	2	463.190894	924.367234	-0.085312	-3.9516E-05	1.4501	0.00067166	1.3648	0.00063214	463.191613535483	64.575	0.41619	64.575	64.334	64.75	0					10	9	2	0	0	0	0.027461	1	5846	5846		19.104	0	1	106380			8838	12609	7221	7231	9829	9829					-0.0979746361740581
ENTAKRKLD	9	Unmodified	_ENTAKRKLD_					0	0	0		ENST00000343889.8_1_1:2411150-2434522:+|nuORF;nc|ENSG00000149527|O75038-2|PLCH2;PLCH2|p.S1145Pfs*53|1|0.17|ENSG00000149527|chr1:2504393-2504393|C/-|frameshift_variant;nc|ENSG00000149527|O75038-4|PLCH2;nc|ENSG00000149527|O75038-3|PLCH2;ENSG00000149527|ENST00000378486|PLCH2	ENST00000343889.8_1_1:2411150-2434522:+|nuORF	ENST00000343889.8_1_1:2411150-2434522:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.8054809570312	2	537.798737	1073.58292	2.4335	0.0013087	-1.2796	-0.00068814	1.154	0.0006206	537.7984959998289	84.393	0.70907	84.393	83.921	84.631	0					24	16	2	0	0	0	0.027453	1	8809	8809		37.812	2.6595	1	1221300			8839	5466	7222	7232	9830	9830					0.04907342357910238
ENTGKLQINV	10	Unmodified	_ENTGKLQINV_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4;REV__nc|ENSG00000196159|Q6V0I7-2|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	OvCa9_classI_Rep2	2	557.3292236328125	2	558.306395	1114.59824	0.92007	0.00051368	-0.39468	-0.00022035	0.52539	0.00029333	558.3060350400409	81.266	0.95813	79.618	79.013	79.971	-1.6485					32	18	2	0	0	0	0.026867	1	6877	6877		21.686	0	1	30591	+		8840	22791;29073	7223	7233	9831	9831					0.04552209155099263
ENTKFRDI	8	Unmodified	_ENTKFRDI_					0	0	0			REV__tr|A0A7D6VT01|A0A7D6VT01_9CLOT4-hydroxy-tetrahydrodipicolinatereductaseOS=ClostridiumintestinaleOX=36845GN=dapBPE=3SV=1	REV__tr|A0A7D6VT01|A0A7D6VT01_9CLOT4-hydroxy-tetrahydrodipicolinatereductaseOS=ClostridiumintestinaleOX=36845GN=dapBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.95489501953125	2	511.766906	1021.51926	-0.41751	-0.00021367	-0.053256	-2.7255E-05	-0.47077	-0.00024092	511.7668011336492	42.592	0.55828	42.592	42.412	42.97	0					35	12	4	0	0	0	0.028476	1	2783	2783		35.618	0	1	371490	+		8841	31561	7224	7234	9832	9832					0.009359819208043518
ENTKKRTFV	9	Unmodified	_ENTKKRTFV_					0	0	0		ENSG00000135919|ENST00000409304|SERPINE2;nc|ENSG00000135919|P07093|SERPINE2;nc|ENSG00000135919|P07093-3|SERPINE2	ENSG00000135919|ENST00000409304|SERPINE2	ENSG00000135919|ENST00000409304|SERPINE2	MULTI-MSMS	OvCa9_classI_Rep2	2	561.8184814453125	2	561.81693	1121.61931	-0.12181	-6.8436E-05	-0.1244	-6.9891E-05	-0.24621	-0.00013833	561.8166073180352	32.562	0.64217	29.852	29.679	30.321	-2.7097					21	12	3	0	0	0	0.53483	1	1093	1093		39.253	6.4404	1	39222			8842	4431	7225	7235	9833	9833					0.06336219254626485
ENTKRYLK	8	Unmodified	_ENTKRYLK_					0	0	0			REV__ENST00000435236.2_1_X:98974480-98975440:-|nuORF	REV__ENST00000435236.2_1_X:98974480-98975440:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.8204956054688	2	526.298373	1050.58219	-0.46951	-0.0002471	1.2917	0.0006798	0.82216	0.0004327	526.2988661329974	64.248	0.87818	60.773	60.539	61.417	-3.475					41	17	3	0	0	0	0.028476	1	4547	4547		42.396	0	1	180200	+		8843	25767	7226	7236	9834	9834					0.05892547708845086
ENTLFELNI	9	Unmodified	_ENTLFELNI_					0	0	0			REV__tr|A0A7D6W0L6|A0A7D6W0L6_9CLOTDUF1887familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00270PE=4SV=1	REV__tr|A0A7D6W0L6|A0A7D6W0L6_9CLOTDUF1887familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00270PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	546.7811279296875	2	546.782222	1091.54989	-0.36544	-0.00019982	0.32127	0.00017567	-0.04417	-2.4151E-05	546.7822304801582	131.49	1.0801	130.37	130.06	131.14	-1.1249					48	21	4	0	0	0	0.16562	1	10482	10482		82.241	5.4664	1	61799	+		8844	31859	7227	7237	9835	9835					0.007777155151643456
ENTLNQYF	8	Unmodified	_ENTLNQYF_					0	0	0			REV__tr|A0A553SF87|A0A553SF87_NIACITautomerasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_08430PE=4SV=1	REV__tr|A0A553SF87|A0A553SF87_NIACITautomerasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_08430PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.820068359375	2	514.737814	1027.46108	1.2055	0.00062053	3.95	0.0020332	5.1555	0.0026537	514.7397324953326	80.893	0.76024	80.893	80.487	81.248	0					21	17	2	0	0	0	0.028476	1	8272	8272		60.972	5.4677	1	189610	+		8845	29547	7228	7238	9836	9836					-0.05155699724468832
ENTTKYLQESL	11	Unmodified	_ENTTKYLQESL_					0	0	0		ENST00000579014.5_1_18:6942080-7042306:-|nuORF;ENSG00000101680|ENST00000389658|LAMA1	ENST00000579014.5_1_18:6942080-7042306:-|nuORF	ENST00000579014.5_1_18:6942080-7042306:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.6031188964844	3	442.55763	1324.65106	-1.8971	-0.00083956	-2.5772	-0.0011405	-4.4742	-0.0019801	442.556337016154	50.03	0.67701	46.889	46.663	47.34	-3.1416					18	12	2	0	0	0	0.025466	1	2884	2884		25.068	0	1	9753.8			8846	2196	7229	7239	9837	9837					0.0017212242726145632
ENTVVRKVSVT	11	Unmodified	_ENTVVRKVSVT_					0	0	0		ENSG00000124613|ENST00000244576|ZNF391	ENSG00000124613|ENST00000244576|ZNF391	ENSG00000124613|ENST00000244576|ZNF391	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.9132080078125	3	411.238343	1230.6932	-0.21215	-8.7242E-05	-3.273	-0.001346	-3.4851	-0.0014332	411.2368549285413	64.146	0.3599	64.146	63.974	64.334	0					15	8	2	0	0	0	0.025908	1	5821	5821		11.932	0	1	272360			8847	3664	7230	7240	9838	9838					0.08708142626255722
ENVALRIL	8	Unmodified	_ENVALRIL_					0	0	0			REV__ENST00000553841.1_1_14:45369974-45372804:+|nuORF	REV__ENST00000553841.1_1_14:45369974-45372804:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	463.8050537109375	2	464.284734	926.554916	-0.59356	-0.00027558	0.3648	0.00016937	-0.22876	-0.00010621	464.2847719810595	69.429	0.89598	66.808	66.366	67.262	-2.6203					40	17	3	0	0	0	0.028476	1	5503	5503		56.721	14.325	1	68003	+		8848	22126	7231	7241	9839	9839					0.08870064168456793
ENVALRIL	8	Unmodified	_ENVALRIL_					0	0	0			REV__ENST00000553841.1_1_14:45369974-45372804:+|nuORF	REV__ENST00000553841.1_1_14:45369974-45372804:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	464.284734	926.554916	-0.99511	-0.00046201	0.67971	0.00031558	-0.31539	-0.00014643	464.2849007610401	70.339	0.77967	66.858	66.589	67.369	-3.4812	0.024817	0.00014939	NaN	56.721	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	314280	+		8849	22126	7231	7241							0.08870064168456793
ENVAVLLTA	9	Unmodified	_ENVAVLLTA_					0	0	0			REV__ENSG00000014824|ENST00000264451|SLC30A9	REV__ENSG00000014824|ENST00000264451|SLC30A9	MULTI-SECPEP	OvCa9_classI_Rep2	2	465.75286865234375	2	465.26875	928.522947	-0.94503	-0.00043969	0.95923	0.0004463	0.014201	6.6075E-06	465.2690647754415	60.563	1.1089	57.793	57.396	58.504	-2.7702					36	20	2	0	0	0	0.027462	1	4427	4427		24.519	0	1	127180	+		8850	16513	7232	7242	9840	9840					0.05582651694658125
ENVCYFML	8	Unmodified	_ENVCYFML_					0	0	0			REV__tr|A0A7D6VSJ2|A0A7D6VSJ2_9CLOTFlagellarbiosyntheticproteinFlhBOS=ClostridiumintestinaleOX=36845GN=flhBPE=3SV=1	REV__tr|A0A7D6VSJ2|A0A7D6VSJ2_9CLOTFlagellarbiosyntheticproteinFlhBOS=ClostridiumintestinaleOX=36845GN=flhBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.78717041015625	2	509.722264	1017.42997	2.9244	0.0014906	1.7928	0.00091385	4.7172	0.0024045	509.7225799667356	134.51	0.34731	132.98	132.83	133.18	-1.5257					10	6	2	0	0	0	0.028476	1	13011	13011		19.36	7.1531	1	8063.6	+		8851	31508	7233	7243	9841	9841					-0.07804312354573995
ENVDENILR	9	Unmodified	_ENVDENILR_					0	0	0			REV__nc|ENSG00000114107|Q8NHQ1-2|CEP70	REV__nc|ENSG00000114107|Q8NHQ1-2|CEP70	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.32275390625	2	551.280377	1100.5462	-0.6279	-0.00034615	4.3962	0.0024235	3.7683	0.0020774	551.2845350133055	38.757	1.1525	38.757	38.394	39.547	0					39	25	2	0	0	0	0.027447	1	2209	2209		56.721	0	1	71138	+		8852	18178	7234	7244	9842	9842					-4.9542586793904775E-05
ENVEEILLI	9	Unmodified	_ENVEEILLI_					0	0	0			REV__tr|A0A7D6VP87|A0A7D6VP87_9CLOTLD-carboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21545PE=3SV=1	REV__tr|A0A7D6VP87|A0A7D6VP87_9CLOTLD-carboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21545PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	535.8143310546875	2	536.300247	1070.58594	0.29029	0.00015568	1.2313	0.00066033	1.5216	0.00081601	536.3004640185918	96.642	0.7209	94.814	94.521	95.242	-1.8286					26	13	3	0	0	0	0.027462	1	6338	6338		37.159	6.6555	1	150000	+		8853	31234	7235	7245	9843	9843					0.053471726920633955
ENVEIARFQ	9	Unmodified	_ENVEIARFQ_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-SECPEP	OvCa9_classI_Rep3	3	553.8095092773438	2	553.285463	1104.55637	-0.86436	-0.00047824	0.8506	0.00047062	-0.013757	-7.6114E-06	553.2855526075796	97.87	1.3774	96.111	95.818	97.195	-1.7595					46	26	3	0	0	0	0.027459	1	6542	6542		52.937	8.5595	1	168210	+		8854	23199	7236	7246	9844	9844					0.008276534665583313
ENVGKGIPI	9	Unmodified	_ENVGKGIPI_					0	0	0		nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB	nc|ENSG00000183091|P20929-3|NEB	nc|ENSG00000183091|P20929-3|NEB	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.28460693359375	2	463.768917	925.523281	-0.31791	-0.00014744	1.9601	0.00090905	1.6422	0.00076161	463.76902456564176	95.204	0.49416	94.176	93.923	94.417	-1.0281					14	9	2	0	0	0	0.027433	1	8542	8542		19.997	8.4858	1	7298.1			8855	8049	7237	7247	9845	9845					0.05754071414526152
ENVIRPILKA	10	Unmodified	_ENVIRPILKA_					0	0	0		MED1-CLPB|1|fusion;nc|ENSG00000162129|Q9H078-5|CLPB;nc|ENSG00000162129|Q9H078-3|CLPB;nc|ENSG00000162129|Q9H078-4|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB;ENST00000538021.5_2_11:72004413-72018253:-|nuORF	MED1-CLPB|1|fusion	MED1-CLPB|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.3162841796875	2	576.858598	1151.70264	1.7474	0.001008	4.1347	0.0023852	5.8821	0.0033931	576.8608489007114	116.62	0.49503	116.62	116.28	116.77	0					16	10	2	0	0	0	0.027145	1	13321	13321		12.812	0	1	87473			8856	6159	7238	7248	9846	9846					0.1328595570246307
ENVKAGALLLN	11	Unmodified	_ENVKAGALLLN_					0	0	0			REV__ENSG00000185722|ENST00000341657|ANKFY1	REV__ENSG00000185722|ENST00000341657|ANKFY1	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.7637939453125	2	571.332413	1140.65027	-1.206	-0.00068905	0.54884	0.00031357	-0.65719	-0.00037548	571.3324868683336	43.674	0.51718	43.674	43.435	43.952	0					19	11	2	0	0	0	0.025714	1	2881	2881		38.754	5.9412	1	147040	+		8857	22522	7239	7249	9847	9847					0.08557372568884603
ENVKYRQV	8	Unmodified	_ENVKYRQV_					0	0	0		ENSG00000164252|ENST00000312916|AGGF1;nc|ENSG00000164252|Q8N302-3|AGGF1	ENSG00000164252|ENST00000312916|AGGF1	ENSG00000164252|ENST00000312916|AGGF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.7626342773438	2	518.282723	1034.55089	-1.3673	-0.00070866	-2.4412	-0.0012652	-3.8085	-0.0019739	518.2830969599537	44.187	0.4842	44.187	43.866	44.35	0					15	10	3	0	0	0	0.028476	1	2938	2938		40.778	9.2484	1	150250			8858	6436	7240	7250	9848	9848					0.03499974674764417
ENVLNYLGIPL	11	Unmodified	_ENVLNYLGIPL_					0	0	0			REV__tr|A0A553SF80|A0A553SF80_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08380PE=3SV=1	REV__tr|A0A553SF80|A0A553SF80_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08380PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	623.810546875	2	622.847896	1243.68124	1.1084	0.00069036	3.3266	0.002072	4.435	0.0027623	622.8499858594329	133.01	0.37485	133.01	132.8	133.17	0					15	7	3	0	0	0	0.025265	1	15450	15450		28.081	4.5588	1	118630	+		8859	29543	7241	7251	9849	9849					0.06914525883098577
ENVLQRVL	8	Unmodified	_ENVLQRVL_					0	0	0		ENSG00000166819|ENST00000300055|PLIN1	ENSG00000166819|ENST00000300055|PLIN1	ENSG00000166819|ENST00000300055|PLIN1	MULTI-MSMS	OvCa9_classI_Rep3	3	485.78839111328125	2	485.787641	969.56073	-1.1407	-0.00055413	0.81681	0.0003968	-0.32387	-0.00015733	485.7879140600141	87.774	2.3065	85.597	84.985	87.291	-2.1768					97	45	4	0	0	0	0.66057	1	5296	5296		51.335	3.6781	1	1238400			8860	6716	7242	7252	9850	9850					0.07473162680128098
ENVRHKWH	8	Unmodified	_ENVRHKWH_					0	0	0		ENSG00000177105|ENST00000351018|RHOG	ENSG00000177105|ENST00000351018|RHOG	ENSG00000177105|ENST00000351018|RHOG	MULTI-SECPEP	OvCa9_classI_Rep2	2	553.808837890625	2	553.286131	1104.55771	0.83289	0.00046082	-2.1027	-0.0011634	-1.2698	-0.00070258	553.2847835984742	97.069	1.181	96.111	95.873	97.054	-0.95856					45	23	2	0	0	0	0.028476	1	8776	8776		40.778	10.46	1	140750			8861	7659	7243	7253	9851	9851					0.0096133234599165
ENVSPGQAF	9	Unmodified	_ENVSPGQAF_					0	0	0		ENSG00000164062|ENST00000296456|APEH	ENSG00000164062|ENST00000296456|APEH	ENSG00000164062|ENST00000296456|APEH	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.2732849121094	2	474.724707	947.43486	-0.52249	-0.00024804	3.805	0.0018063	3.2825	0.0015583	474.726400543416	68.03	0.55335	68.03	67.803	68.356	0					21	13	2	0	0	0	0.027462	1	6389	6389		24.203	0	1	571370			8862	6398	7244	7254	9852	9852					-0.040959688959446794
ENVSRILDN	9	Unmodified	_ENVSRILDN_					0	0	0		ENSG00000145863|ENST00000274545|GABRA6	ENSG00000145863|ENST00000274545|GABRA6	ENSG00000145863|ENST00000274545|GABRA6	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.8173217773438	2	530.275095	1058.53564	-0.52686	-0.00027938	-2.7896	-0.0014792	-3.3164	-0.0017586	530.7763449894073	49.321	0.74279	49.321	48.807	49.55	0					22	16	2	0	0	0	0.027311	1	3622	3622		93.598	22.781	1	348350			8863	5249	7245	7255	9853	9853					0.008710630869245506
ENVTRVRLV	9	Unmodified	_ENVTRVRLV_					0	0	0		MTHFD1-CASK|1|fusion;MTHFD1-CASK|3|fusion;MTHFD1-CASK|2|fusion;ENSG00000147044|ENST00000378163|CASK;nc|ENSG00000147044|O14936-2|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-3|CASK;CASK|p.A814Kfs*50|1|0.31|ENSG00000147044|chrX:41531075-41531088|TCCCATACATCGCA/-|frameshift_variant;ENST00000472704.1_1_X:41411986-41437658:-|nuORF;nc|ENSG00000147044|O14936-5|CASK	MTHFD1-CASK|1|fusion	MTHFD1-CASK|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	543.3241577148438	2	543.324922	1084.63529	0.33241	0.00018061	-1.1709	-0.0006362	-0.83853	-0.00045559	543.3242900323877	72.054	1.4324	69.452	69.032	70.464	-2.6023					87	28	4	0	0	0	0.59259	1	3411	3411		32.812	2.4947	1	434900			8864	14842	7246	7256	9854	9854					0.09635925491488706
ENVVDFIFQRK	11	Unmodified	_ENVVDFIFQRK_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3;REV__nc|ENSG00000196218|P21817-3|RYR1;REV__nc|ENSG00000198626|Q92736-2|RYR2	REV__nc|ENSG00000198838|Q15413-2|RYR3	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.7679138183594	3	465.585743	1393.7354	-0.18394	-8.5639E-05	-2.6751	-0.0012455	-2.859	-0.0013311	465.5843903803051	51.019	0.64302	51.019	50.775	51.418	0					29	14	4	0	0	0	0.026174	1	3932	3932		17.167	1.2461	1	621570	+		8865	23074;22801;23038	7247	7257	9855	9855					0.05428118034637919
ENVVTYDD	8	Unmodified	_ENVVTYDD_					0	0	0		ENSG00000145526|ENST00000382275|CDH18	ENSG00000145526|ENST00000382275|CDH18	ENSG00000145526|ENST00000382275|CDH18	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.7536926269531	2	477.70618	953.397806	-0.050833	-2.4283E-05	-2.9781	-0.0014226	-3.0289	-0.0014469	477.7046696252113	47.186	0.39131	47.186	47.03	47.422	0					12	8	2	0	0	0	0.028476	1	3372	3372		37.159	18.835	1	109780			8866	5230	7248	7258	9856	9856					-0.08075685232370233
ENVYKITTDL	10	Unmodified	_ENVYKITTDL_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	OvCa9_classI_Rep4_	4	598.3148193359375	2	598.313886	1194.61322	-0.10474	-6.2667E-05	3.4538	0.0020664	3.349	0.0020038	598.316223305457	109.07	8.6473	107.34	106.82	115.46	-1.7256					380	168	6	0	0	0	0.65849	1	10313	10313		35.152	2.4015	1	25436000			8867	7566	7249	7259	9857	9857					0.02369656232417583
ENWEEKNIED	10	Unmodified	_ENWEEKNIED_					0	0	0		ENSG00000242852|ENST00000397732|ZNF709	ENSG00000242852|ENST00000397732|ZNF709	ENSG00000242852|ENST00000397732|ZNF709	MULTI-SECPEP	OvCa9_classI_Rep4_	4	435.2594299316406	3	435.857968	1304.55207	-0.30033	-0.0001309	-1.8455	-0.00080436	-2.1458	-0.00093526	435.85697396762924	53.073	0.60722	49.865	49.746	50.354	-3.208					15	11	2	0	0	0	0.027193	1	3215	3215		22.58	4.3176	1	13843			8868	9369	7250	7260	9858	9858					-0.08801900537673646
ENWPMFLRG	9	Unmodified	_ENWPMFLRG_					0	0	0		tr|A0A553SHS4|A0A553SHS4_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_13570PE=3SV=1	tr|A0A553SHS4|A0A553SHS4_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_13570PE=3SV=1	tr|A0A553SHS4|A0A553SHS4_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_13570PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.2992553710938	2	575.279126	1148.5437	-0.88313	-0.00050805	-0.7368	-0.00042386	-1.6199	-0.00093191	575.2788426461624	98.615	0.364	96.93	96.749	97.113	-1.685					8	6	2	0	0	0	0.027411	1	6587	6587		54.776	14.718	1	9184.8			8869	33304	7251	7261	9859	9859					-0.024630811973111122
ENWRTKII	8	Unmodified	_ENWRTKII_					0	0	0			REV__tr|A0A7D6ZEV9|A0A7D6ZEV9_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12475PE=4SV=1	REV__tr|A0A7D6ZEV9|A0A7D6ZEV9_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12475PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.7861938476562	2	530.300916	1058.58728	-0.14166	-7.5124E-05	-1.1945	-0.00063347	-1.3362	-0.00070859	530.3004670880066	69.315	0.40707	69.315	69.184	69.591	0					17	9	3	0	0	0	0.028476	1	6583	6583		45.952	14.422	1	318330	+		8870	31951	7252	7262	9860	9860					0.0603285157146729
ENYFTEVE	8	Unmodified	_ENYFTEVE_					0	0	0		tr|A0A553SML1|A0A553SML1_NIACICatalaseOS=NialliacirculansOX=1397GN=CEQ21_22670PE=3SV=1	tr|A0A553SML1|A0A553SML1_NIACICatalaseOS=NialliacirculansOX=1397GN=CEQ21_22670PE=3SV=1	tr|A0A553SML1|A0A553SML1_NIACICatalaseOS=NialliacirculansOX=1397GN=CEQ21_22670PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.8225708007812	2	515.72183	1029.42911	0.30015	0.00015479	0.17184	8.8624E-05	0.47199	0.00024342	516.224342292035	74.214	0.27084	74.214	74.095	74.366	0					8	6	2	0	0	0	0.028476	1	7349	7349		31.955	0	1	123420			8871	33845	7253	7263	9861	9861					-0.08443112198278868
ENYGYVLNL	9	Unmodified	_ENYGYVLNL_					0	0	0		tr|A0A7D6VSJ0|A0A7D6VSJ0_9CLOTPD-(D/E)XKmotifproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09485PE=4SV=1	tr|A0A7D6VSJ0|A0A7D6VSJ0_9CLOTPD-(D/E)XKmotifproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09485PE=4SV=1	tr|A0A7D6VSJ0|A0A7D6VSJ0_9CLOTPD-(D/E)XKmotifproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09485PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.3511962890625	2	542.769114	1083.52368	0.075029	4.0724E-05	-3.6351	-0.001973	-3.5601	-0.0019323	542.7669791562301	58.289	0.50261	58.289	58.069	58.572	0					21	11	2	0	0	0	0.027461	1	4938	4938		32.812	7.3622	1	1071600			8872	35029	7254	7264	9862	9862					-0.014745536562713824
ENYHLKRK	8	Unmodified	_ENYHLKRK_					0	0	0			REV__PPP1R2|p.E173Rfs*24|1|0.04|ENSG00000184203|chr3:195519072-195519073|-/G|frameshift_variant	REV__PPP1R2|p.E173Rfs*24|1|0.04|ENSG00000184203|chr3:195519072-195519073|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.2513427734375	2	544.30399	1086.59343	-0.66611	-0.00036256	-0.050787	-2.7644E-05	-0.71689	-0.00039021	544.3040903621485	109.4	0.93212	107.68	107.33	108.26	-1.7256					24	17	3	0	0	0	0.028476	1	10008	10008		37.159	8.0096	1	33590	+		8873	22410	7255	7265	9863	9863					0.053593698029771986
ENYLQVFW	8	Unmodified	_ENYLQVFW_					0	0	0		tr|A0A553SLE8|A0A553SLE8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20505PE=4SV=1	tr|A0A553SLE8|A0A553SLE8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20505PE=4SV=1	tr|A0A553SLE8|A0A553SLE8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20505PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.284423828125	2	549.766374	1097.5182	-0.87513	-0.00048112	0.32975	0.00018129	-0.54538	-0.00029983	549.7663715480143	48.512	0.77726	45.404	45.141	45.918	-3.1077					22	14	2	0	0	0	0.028476	1	2728	2728		27.882	0	1	40474			8874	33714	7256	7266	9864	9864					-0.026662324480867028
ENYRRSKKRLY	11	Unmodified	_ENYRRSKKRLY_					0	0	0			REV__ENSG00000173258|ENST00000309235|ZNF483	REV__ENSG00000173258|ENST00000309235|ZNF483	MULTI-MSMS	OvCa9_classI_Rep2	2	504.951171875	3	504.951308	1511.83209	-1.0352	-0.00052273	0.34738	0.00017541	-0.68783	-0.00034732	504.9515351464522	76.262	2.1432	74.408	74.044	76.187	-1.854					125	40	5	0	0	0	0.70587	3	6313	6313;6319;6330		27.644	7.2928	1	939050	+		8875	21760	7257	7267	9865;9866;9867	9865					0.09665105314456923
ENYSAELR	8	Unmodified	_ENYSAELR_					0	0	0		nc|ENSG00000159216|Q01196-6|RUNX1;nc|ENSG00000159216|Q01196-10|RUNX1;SCAF4-RUNX1|2|fusion;SCAF4-RUNX1|1|fusion;ENSG00000124813|ENST00000647337|RUNX2;nc|ENSG00000124813|Q13950-2|RUNX2;nc|ENSG00000124813|Q13950-3|RUNX2;ENSG00000159216|ENST00000675419|RUNX1;nc|ENSG00000159216|Q01196-2|RUNX1;nc|ENSG00000159216|Q01196-9|RUNX1;nc|ENSG00000159216|Q01196-5|RUNX1;nc|ENSG00000159216|Q01196|RUNX1;nc|ENSG00000020633|Q13761-2|RUNX3;ENSG00000020633|ENST00000308873|RUNX3;nc|ENSG00000159216|Q01196-11|RUNX1;nc|ENSG00000159216|Q01196-4|RUNX1;nc|ENSG00000159216|Q01196-3|RUNX1;nc|ENSG00000159216|Q01196-7|RUNX1;SCAF4-RUNX1|3|fusion	nc|ENSG00000159216|Q01196-6|RUNX1	nc|ENSG00000159216|Q01196-6|RUNX1	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.72412109375	2	491.235439	980.456324	-0.93794	-0.00046075	1.279	0.00062827	0.34102	0.00016752	491.2382662622946	37.481	0.69259	37.481	37.114	37.806	0					31	14	4	0	0	0	0.028476	1	2023	2023		26.693	0	1	179970			8876	1024	7258	7268	9868	9868					-0.034685838672317004
ENYSHLVIIN	10	Unmodified	_ENYSHLVIIN_					0	0	0		nc|ENSG00000187912|Q6ZS10-3|CLEC17A;ENSG00000187912|ENST00000417570|CLEC17A;ENST00000551730.1_1_19:14710521-14721005:+|nuORF	nc|ENSG00000187912|Q6ZS10-3|CLEC17A	nc|ENSG00000187912|Q6ZS10-3|CLEC17A	MULTI-MSMS	OvCa9_classI_Rep4_	4	401.2109069824219	3	401.211906	1200.61389	1.8787	0.00075377	-3.6209	-0.0014528	-1.7422	-0.00069899	401.2103303129462	20.687	0.96168	19.349	18.954	19.915	-1.3386					57	19	4	0	0	0	0.61634	1	77	77		40.058	15.826	1	85879			8877	8441	7259	7269	9869	9869					0.02160495672160323
ENYVPVQLL	9	Unmodified	_ENYVPVQLL_					0	0	0		ENSG00000187688|ENST00000338560|TRPV2;ENST00000577865.2_1_17:16336966-16340200:+|nuORF;ENST00000493434.1_1_17:16338039-16340200:+|nuORF	ENSG00000187688|ENST00000338560|TRPV2	ENSG00000187688|ENST00000338560|TRPV2	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.7744750976562	2	537.795132	1073.57571	1.6563	0.00089075	1.7218	0.000926	3.3781	0.0018167	537.7963975944363	92.239	0.62993	92.239	91.964	92.594	0					23	14	2	0	0	0	0.027462	1	10007	10007		30.318	0.47618	1	805440			8878	8424	7260	7270	9870	9870					0.0418660975747116
EPAAEIEALL	10	Unmodified	_EPAAEIEALL_					0	0	0		nc|ENSG00000136193|Q12765-3|SCRN1;ENSG00000136193|ENST00000242059|SCRN1;nc|ENSG00000136193|Q12765-2|SCRN1	nc|ENSG00000136193|Q12765-3|SCRN1	nc|ENSG00000136193|Q12765-3|SCRN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3649291992188	2	528.284597	1054.55464	0.67558	0.0003569	-0.36777	-0.00019429	0.30781	0.00016261	528.7877389628115	158.44	0.67021	158.44	158.27	158.94	0					17	13	2	0	0	0	0.026523	1	18622	18622		68.787	15.435	1	29783			8879	4469	7261	7271	9871	9871					0.029545996579599887
EPAAPRQPGR	10	Unmodified	_EPAAPRQPGR_					0	0	0			REV__nc|ENSG00000176912|Q8TAI1|TYMSOS	REV__nc|ENSG00000176912|Q8TAI1|TYMSOS	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.2568969726562	2	539.791247	1077.56794	-0.55898	-0.00030173	-2.0448	-0.0011038	-2.6038	-0.0014055	539.788719947175	56.948	0.61001	53.603	53.375	53.985	-3.3449					18	11	2	0	0	0	0.026915	1	3658	3658		27.882	0	1	32361	+		8880	24467	7262	7272	9872	9872					0.03225895280570512
EPAARIAP	8	Unmodified	_EPAARIAP_					0	0	0			REV__ENST00000467498.5_1_2:97215494-97216349:+|nuORF	REV__ENST00000467498.5_1_2:97215494-97216349:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	412.7347717285156	2	412.734877	823.455202	1.4611	0.00060306	-0.82437	-0.00034025	0.63675	0.00026281	412.7342544249202	36.823	1.1961	33.93	33.695	34.891	-2.8925					57	23	4	0	0	0	0.60331	1	1319	1319		63.306	11.007	1	130370	+		8881	26208	7263	7273	9873	9873					0.036412465545254236
EPAARIVQL	9	Unmodified	_EPAARIVQL_					0	0	0			REV__nc|ENSG00000152763|Q5VTH9-2|DNAI4	REV__nc|ENSG00000152763|Q5VTH9-2|DNAI4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.7525634765625	2	498.795466	995.57638	0.82332	0.00041067	-1.8553	-0.00092541	-1.032	-0.00051474	498.79433621674366	96.998	1.4573	94.572	94.22	95.678	-2.4256					44	28	2	0	0	0	0.027462	1	8704	8704		42.396	8.8806	1	188020	+		8882	20301	7264	7274	9874	9874					0.07841449197189831
EPAARIVQL	9	Unmodified	_EPAARIVQL_					0	0	0			REV__nc|ENSG00000152763|Q5VTH9-2|DNAI4	REV__nc|ENSG00000152763|Q5VTH9-2|DNAI4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	498.795466	995.57638	-0.24763	-0.00012352	-1.0662	-0.0005318	-1.3138	-0.00065531	498.7947953891326	95.5	1.4396	94.472	94.219	95.658	-1.0281	-0.052346	-5.4153E-05	NaN	34.173	62	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146260	+		8883	20301	7264	7274							0.07841449197189831
EPACDNDDLIE	11	Unmodified	_EPACDNDDLIE_					0	0	0			REV__nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	REV__nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	MULTI-SECPEP	OvCa99_classI_Rep5	1	617.7897338867188	2	617.250625	1232.4867	0.58977	0.00036404	-0.56607	-0.0003494	0.023708	1.4634E-05	617.2505290154764	141.57	0.39928	141.57	141.34	141.74	0					14	7	3	0	0	0	0.025332	1	16546	16546		49.536	6.6718	1	29767	+		8884	23510	7265	7275	9875	9875					-0.12024638055004289
EPAGHHCVAKG	11	Carbamidomethyl (C)	_EPAGHHC(Carbamidomethyl (C))VAKG_	EPAGHHC(1)VAKG		EPAGHHC(53)VAKG		0	1	0			REV__ENST00000373242.6_1_10:71911919-71912228:-|nuORF	REV__ENST00000373242.6_1_10:71911919-71912228:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	581.7774047851562	2	581.774739	1161.53493	0.80633	0.0004691	-1.2998	-0.0007562	-0.4935	-0.0002871	581.7742436590028	150.19	1.5477	150.19	149.65	151.2	0					64	30	4	0	0	0	0.50928	1	17577	17577		52.937	6.9645	1	223290	+		8885	25033	7266	7276	9876	9876	304				-0.039380548338158405
EPAGKAPAKI	10	Unmodified	_EPAGKAPAKI_					0	0	0		ENSG00000177103|ENST00000651296|DSCAML1;nc|ENSG00000177103|Q8TD84-2|DSCAML1;DSCAML1|p.N1856Tfs*49|1|0.04|ENSG00000177103|chr11:117431023-117431023|C/-|frameshift_variant	ENSG00000177103|ENST00000651296|DSCAML1	ENSG00000177103|ENST00000651296|DSCAML1	MULTI-MSMS	OvCa99_classI_Rep5	1	491.2905578613281	2	491.290017	980.565481	2.469	0.001213	-0.26382	-0.00012961	2.2052	0.0010834	491.2898188851015	99.348	0.45557	99.348	99.115	99.57	0					21	10	3	0	0	0	0.39172	1	10980	10980		69.628	0.8408	1	680030			8886	7658	7267	7277	9877	9877					0.07442046822893644
EPAGKAPAKI	10	Unmodified	_EPAGKAPAKI_					0	0	0		ENSG00000177103|ENST00000651296|DSCAML1;nc|ENSG00000177103|Q8TD84-2|DSCAML1;DSCAML1|p.N1856Tfs*49|1|0.04|ENSG00000177103|chr11:117431023-117431023|C/-|frameshift_variant	ENSG00000177103|ENST00000651296|DSCAML1	ENSG00000177103|ENST00000651296|DSCAML1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	491.290017	980.565481	-1.1627	-0.00057122	-0.37344	-0.00018347	-1.5361	-0.00075469	491.28958075956456	100.85	0.50954	99.244	99.094	99.603	-1.6053	0.0048268	0.00017124	NaN	69.628	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28979			8887	7658	7267	7277							0.07442046822893644
EPAGKAPAKI	10	Unmodified	_EPAGKAPAKI_					0	0	0		ENSG00000177103|ENST00000651296|DSCAML1;nc|ENSG00000177103|Q8TD84-2|DSCAML1;DSCAML1|p.N1856Tfs*49|1|0.04|ENSG00000177103|chr11:117431023-117431023|C/-|frameshift_variant	ENSG00000177103|ENST00000651296|DSCAML1	ENSG00000177103|ENST00000651296|DSCAML1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	491.290017	980.565481	-0.30972	-0.00015216	-2.0899	-0.0010268	-2.3996	-0.0011789	491.2889276266331	101.39	0.5825	99.125	98.974	99.557	-2.2665	-0.11424	-0.0015153	NaN	69.628	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19968			8888	7658	7267	7277							0.07442046822893644
EPAHMILT	8	Unmodified	_EPAHMILT_					0	0	0		ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	ENSG00000162366|ENST00000294338|PDZK1IP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.6205139160156	2	456.236396	910.458238	0.22731	0.00010371	3.244	0.00148	3.4713	0.0015838	456.23798551851246	32.253	0.34852	32.253	32.105	32.453	0					14	6	3	0	0	0	0.028476	1	1388	1388		26.796	0	1	29699			8889	6172	7268	7278	9878	9878					-0.0005724638298261198
EPAKPETK	8	Unmodified	_EPAKPETK_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.7626647949219	2	450.245275	898.475997	0.31002	0.00013959	-0.0038253	-1.7223E-06	0.3062	0.00013786	450.2455697155402	51.287	0.38025	51.287	51.164	51.544	0					11	8	2	0	0	0	0.028476	1	3946	3946		45.952	0	1	87973	+		8890	28942	7269	7279	9879	9879					0.02269792143522409
EPALSIQKVD	10	Unmodified	_EPALSIQKVD_					0	0	0			REV__nc|ENSG00000165801|Q8TER5-2|ARHGEF40	REV__nc|ENSG00000165801|Q8TER5-2|ARHGEF40	MULTI-MSMS	OvCa9_classI_Rep2	2	550.3031005859375	2	550.303321	1098.59209	-1.3686	-0.00075312	0.97734	0.00053783	-0.39121	-0.00021529	550.3038190242007	62.985	2.202	60.24	59.695	61.897	-2.7444					104	41	4	0	0	0	0.3094	1	4726	4726		79.713	4.6693	1	3245100	+		8891	21118	7270	7280	9880	9880					0.04673690923573304
EPAPKHHRGK	10	Unmodified	_EPAPKHHRGK_					0	0	0		ENSG00000225614|ENST00000565624|ZNF469	ENSG00000225614|ENST00000565624|ZNF469	ENSG00000225614|ENST00000565624|ZNF469	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.8120727539062	2	578.820338	1155.62612	1.3552	0.0007844	-1.7788	-0.0010296	-0.42362	-0.0002452	578.8193452051063	90.686	0.35467	90.686	90.462	90.816	0					14	8	2	0	0	0	0.026956	1	9704	9704		19.997	0	1	300640			8892	9263	7271	7281	9881	9881					0.054535769258336586
EPAQLVQNTPS	11	Unmodified	_EPAQLVQNTPS_					0	0	0			REV__ENST00000475189.1_1_1:11114652-11114925:-|nuORF	REV__ENST00000475189.1_1_1:11114652-11114925:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	591.3071899414062	2	592.30131	1182.58807	0.83557	0.00049491	-2.3817	-0.0014107	-1.5462	-0.0009158	592.2995265437406	151.65	0.52167	151.65	151.45	151.97	0					18	10	3	0	0	0	0.025864	1	17752	17752		26.063	12.609	1	100350	+		8893	26353	7272	7282	9882	9882					0.004076014298561859
EPARHLGLL	9	Unmodified	_EPARHLGLL_					0	0	0			REV__ENSG00000130766|ENST00000253063|SESN2	REV__ENSG00000130766|ENST00000253063|SESN2	MULTI-MSMS	OvCa99_classI_Rep5	1	503.2952575683594	2	503.295633	1004.57671	-0.97452	-0.00049047	0.36656	0.00018449	-0.60796	-0.00030598	503.2956569655041	44.238	0.44795	44.238	44.08	44.528	0					19	9	3	0	0	0	0.38529	1	2974	2974		53.351	1.0523	1	528020	+		8894	18969	7273	7283	9883	9883					0.07460868917041807
EPARPLKV	8	Unmodified	_EPARPLKV_					0	0	0			REV__ENSG00000105227|ENST00000324001|PRX	REV__ENSG00000105227|ENST00000324001|PRX	MULTI-SECPEP	OvCa9_classI_Rep4_	4	455.77630615234375	2	455.279452	908.544351	0.30095	0.00013702	-0.47545	-0.00021646	-0.1745	-7.9448E-05	455.2790172774132	39.262	1.2902	36.336	35.7	36.991	-2.9264					44	25	3	0	0	0	0.028476	1	1639	1639		25.45	0	1	52461	+		8895	17706	7274	7284	9884	9884					0.08642081514040001
EPATCVLILL	10	Unmodified	_EPATCVLILL_					0	0	0			REV__ENSG00000235863|ENST00000451237|B3GALT4	REV__ENSG00000235863|ENST00000451237|B3GALT4	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.2711181640625	2	536.309561	1070.60457	2.924	0.0015682	1.5535	0.00083314	4.4775	0.0024013	536.3097082245013	89.961	0.46528	89.961	89.763	90.228	0					15	10	2	0	0	0	0.026752	1	9600	9600		35.618	1.4457	1	347930	+		8896	23407	7275	7285	9885	9885					0.07209011062263926
EPATWRLP	8	Unmodified	_EPATWRLP_					0	0	0			REV__ENSG00000164715|ENST00000297293|LMTK2	REV__ENSG00000164715|ENST00000297293|LMTK2	MULTI-SECPEP	OvCa9_classI_Rep2	2	485.7877502441406	2	485.261259	968.507966	0.3062	0.00014858	2.6561	0.0012889	2.9623	0.0014375	485.26196734101364	86.839	0.57769	85.408	85.015	85.593	-1.4311					14	10	2	0	0	0	0.028476	1	7571	7571		47.657	0	1	13683	+		8897	21014	7276	7286	9886	9886					0.022452046173157214
EPCGEAKLQL	10	Carbamidomethyl (C)	_EPC(Carbamidomethyl (C))GEAKLQL_	EPC(1)GEAKLQL		EPC(71)GEAKLQL		0	1	0			REV__ENSG00000159337|ENST00000290472|PLA2G4D	REV__ENSG00000159337|ENST00000290472|PLA2G4D	MULTI-MSMS	OvCa9_classI_Rep3	3	572.7860107421875	2	572.786981	1143.55941	-0.72165	-0.00041335	-2.8455	-0.0016299	-3.5672	-0.0020432	572.7852042394844	102.79	2.8693	101.27	100.58	103.45	-1.5211					127	54	3	0	0	0	0.38315	1	7082	7082		70.816	7.2824	1	1330700	+		8898	20609	7277	7287	9887	9887	226				-0.006628394709423446
EPCQSQLPL	9	Unmodified	_EPCQSQLPL_					0	0	0			REV__ENSG00000079999|ENST00000171111|KEAP1	REV__ENSG00000079999|ENST00000171111|KEAP1	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.26702880859375	2	507.749867	1013.48518	-1.439	-0.00073064	1.2502	0.00063478	-0.1888	-9.5861E-05	507.75200757501193	86.98	1.1642	84.804	84.18	85.345	-2.1768					32	22	2	0	0	0	0.027461	1	5248	5248		40.778	0	1	22032	+		8899	17048	7278	7288	9888	9888					-0.02102182562452981
EPCSKIIKSE	10	Unmodified	_EPCSKIIKSE_					0	0	0			REV__ENST00000475010.5_1_7:140155450-140179030:-|nuORF	REV__ENST00000475010.5_1_7:140155450-140179030:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.2705688476562	2	567.297181	1132.57981	0.76204	0.00043231	-0.64495	-0.00036588	0.11709	6.6425E-05	567.296769670088	64.174	0.48904	60.699	60.539	61.028	-3.475					12	9	2	0	0	0	0.026906	1	4583	4583		27.047	11.406	1	38270	+		8900	26351	7279	7289	9889	9889					0.018823311888809258
EPCSPRNPNL	10	Unmodified	_EPCSPRNPNL_					0	0	0		ENST00000301887.8_1_11:64756061-64756229:-|nuORF	ENST00000301887.8_1_11:64756061-64756229:-|nuORF	ENST00000301887.8_1_11:64756061-64756229:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.3525390625	2	563.769123	1125.52369	0.62427	0.00035195	-3.5089	-0.0019782	-2.8847	-0.0016263	563.7669193541728	117.67	0.68332	116.33	116.16	116.84	-1.3444					14	12	2	0	0	0	0.026523	1	10994	10994		62.107	16.135	1	14371			8901	10192	7280	7290	9890	9890					-0.034048769279252156
EPCVLPFTYN	10	Unmodified	_EPCVLPFTYN_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-12|FN1;FN1-SEC31A|2|fusion;FN1|p.E1684*|1|0.04|ENSG00000115414|chr2:215380922-215380923|-/A|frameshift_variant;FN1-SEC31A|1|fusion;FN1|p.K486Gfs*11|1|0.08|ENSG00000115414|chr2:215422181-215422182|-/TTTGGTCC|frameshift_variant;nc|ENSG00000115414|P02751-16|FN1;nc|ENSG00000115414|P02751-2|FN1;FN1|p.G538Afs*18|1|0.04|ENSG00000115414|chr2:215420734-215420735|CC/-|frameshift_variant;FN1|p.D485Efs*18|1|0.07|ENSG00000115414|chr2:215422182-215422183|-/GTATTAGAGAGAAGACTTTGCAAAGT|frameshift_variant	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	591.8054809570312	2	591.778625	1181.5427	1.7584	0.0010406	3.6128	0.002138	5.3712	0.0031786	592.2812026426119	135.69	0.42056	135.69	135.41	135.83	0					12	8	2	0	0	0	0.026688	1	15815	15815		32.812	0	1	85482			8902	3093	7281	7291	9891	9891					-0.040813403568563444
EPDEIERSP	9	Unmodified	_EPDEIERSP_					0	0	0			REV__nc|ENSG00000127022|P27824-2|CANX	REV__nc|ENSG00000127022|P27824-2|CANX	MULTI-MSMS	OvCa9_classI_Rep3	3	536.24951171875	2	536.251286	1070.48802	2.2652	0.0012147	-4.0121	-0.0021515	-1.7469	-0.00093678	536.2490458807978	120.46	1.5758	119.43	119.12	120.69	-1.0271					80	30	4	0	0	0	0.11471	1	9186	9186		93.195	7.836	1	464170	+		8903	18804	7282	7292	9892	9892					-0.04440635903938528
EPDEPHQAR	9	Unmodified	_EPDEPHQAR_					0	0	0		ENSG00000204131|ENST00000633930|NHSL2	ENSG00000204131|ENST00000633930|NHSL2	ENSG00000204131|ENST00000633930|NHSL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.7745361328125	2	539.749244	1077.48394	1.7897	0.00096601	1.3068	0.00070534	3.0965	0.0016713	540.2525784305654	126.47	0.1414	126.47	126.37	126.51	0					4	2	2	0	0	0	0.027462	1	14630	14630		26.693	9.9879	1	17187			8904	8950	7283	7293	9893	9893					-0.051706806069887534
EPDGQPLGN	9	Unmodified	_EPDGQPLGN_					0	0	0			REV__nc|ENSG00000188522|A6ND36-2|FAM83G	REV__nc|ENSG00000188522|A6ND36-2|FAM83G	MULTI-MSMS	OvCa9_classI_Rep2	2	463.712646484375	2	463.714339	925.414125	-4.8795	-0.0022627	3.1505	0.0014609	-1.729	-0.00080174	463.7156659367406	158.37	0.54906	158.15	157.93	158.48	-0.22696					26	14	2	0	0	0	0.6653	1	16085	16085		24.203	4.206	1	28002	+		8905	22716	7284	7294	9894	9894					-0.0515655927562193
EPDHIYPCR	9	Unmodified	_EPDHIYPCR_					0	0	0			REV__ENSG00000014164|ENST00000262577|ZC3H3	REV__ENSG00000014164|ENST00000262577|ZC3H3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.2978515625	2	565.258391	1128.50223	0.8531	0.00048222	-1.4949	-0.00084498	-0.64175	-0.00036275	565.2571372598987	105.58	1.6598	103.57	102.9	104.56	-2.0161					47	32	3	0	0	0	0.027462	1	9527	9527		29.15	16.338	1	46907	+		8906	16512	7285	7295	9895	9895					-0.05688261956674978
EPDHIYPCR	9	Unmodified	_EPDHIYPCR_					0	0	0			REV__ENSG00000014164|ENST00000262577|ZC3H3	REV__ENSG00000014164|ENST00000262577|ZC3H3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	565.258391	1128.50223	-0.67708	-0.00038273	-6.1273	-0.0034635	-6.8044	-0.0038462	565.254597266945	103.9	0.4935	103.32	103.03	103.52	-0.57639	-0.17546	-0.0044307	NaN	29.15	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20189	+		8907	16512	7285	7295							-0.05688261956674978
EPDHIYPCR	9	Unmodified	_EPDHIYPCR_					0	0	0			REV__ENSG00000014164|ENST00000262577|ZC3H3	REV__ENSG00000014164|ENST00000262577|ZC3H3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	565.258391	1128.50223	0.1721	9.728E-05	-0.8101	-0.00045792	-0.638	-0.00036064	565.2576738258093	104.95	1.3489	103.61	103	104.35	-1.3482	0.10814	0.0015805	NaN	29.15	33	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63360	+		8908	16512	7285	7295							-0.05688261956674978
EPDNQNDIQ	9	Unmodified	_EPDNQNDIQ_					0	0	0			REV__ENSG00000158301|ENST00000483720|GPRASP2	REV__ENSG00000158301|ENST00000483720|GPRASP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3021240234375	2	536.730717	1071.44688	-0.17541	-9.4148E-05	-2.2551	-0.0012104	-2.4305	-0.0013045	536.7294440529453	42.992	0.21771	42.992	42.839	43.057	0					7	4	2	0	0	0	0.027462	1	2792	2792		51.193	3.5354	1	58095	+		8909	20562	7286	7296	9896	9896					-0.08598396943420994
EPDQTINSF	9	Unmodified	_EPDQTINSF_					0	0	0			REV__ENSG00000206530|ENST00000393845|CFAP44	REV__ENSG00000206530|ENST00000393845|CFAP44	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.341796875	2	525.740554	1049.46655	-2.3782	-0.0012503	4.0245	0.0021158	1.6463	0.0008655	525.7422104105154	87.689	0.90679	85.062	84.748	85.655	-2.6269					33	17	3	0	0	0	0.027207	1	7442	7442		78.264	25.175	1	51391	+		8910	23240	7287	7297	9897	9897					-0.05620020932656189
EPDQTINSF	9	Unmodified	_EPDQTINSF_					0	0	0			REV__ENSG00000206530|ENST00000393845|CFAP44	REV__ENSG00000206530|ENST00000393845|CFAP44	MULTI-MATCH	OvCa9_classI_Rep2	2		2	525.740554	1049.46655	0.24171	0.00012708	1.7469	0.00091843	1.9886	0.0010455	525.7416003535644	86.725	0.9384	85.294	84.803	85.741	-1.4311	0.17656	-0.0020646	NaN	78.264	21	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13295	+		8911	23240	7287	7297							-0.05620020932656189
EPDSPSEEPL	10	Unmodified	_EPDSPSEEPL_					0	0	0		ENSG00000007968|ENST00000361729|E2F2	ENSG00000007968|ENST00000361729|E2F2	ENSG00000007968|ENST00000361729|E2F2	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.7572021484375	2	550.243126	1098.4717	0.83883	0.00046156	2.5575	0.0014073	3.3964	0.0018688	550.2441432133747	139.34	0.53256	139.34	139.07	139.61	0					21	10	3	0	0	0	0.026915	1	16235	16235		35.618	11.416	1	44916			8912	909	7288	7298	9898	9898					-0.073597618606982
EPDTRDFF	8	Unmodified	_EPDTRDFF_					0	0	0		tr|A0A553SKS9|A0A553SKS9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_19205PE=4SV=1	tr|A0A553SKS9|A0A553SKS9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_19205PE=4SV=1	tr|A0A553SKS9|A0A553SKS9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_19205PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.303466796875	2	513.729989	1025.44543	1.2823	0.00065878	-2.1854	-0.0011227	-0.90311	-0.00046395	513.7287025621209	120.15	0.5902	119.12	118.82	119.41	-1.0271					18	11	2	0	0	0	0.028476	1	9122	9122		60.972	2.19	1	15938			8913	33650	7289	7299	9899	9899					-0.06627986241505823
EPDTRDFF	8	Unmodified	_EPDTRDFF_					0	0	0		tr|A0A553SKS9|A0A553SKS9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_19205PE=4SV=1	tr|A0A553SKS9|A0A553SKS9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_19205PE=4SV=1	tr|A0A553SKS9|A0A553SKS9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_19205PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	513.729989	1025.44543	-1.5243	-0.0007831	1.2858	0.00066053	-0.23858	-0.00012257	513.7305870610855	119.53	0.78695	119.36	118.91	119.69	-0.17138	0.11807	0.0020084	NaN	60.972	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10324			8914	33650	7289	7299							-0.06627986241505823
EPEASRAPRP	10	Unmodified	_EPEASRAPRP_					0	0	0		ENSG00000112877|ENST00000264935|CEP72	ENSG00000112877|ENST00000264935|CEP72	ENSG00000112877|ENST00000264935|CEP72	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.2523193359375	2	555.288537	1108.56252	2.81	0.0015604	-2.0558	-0.0011416	0.75421	0.00041881	555.7880120934244	100.75	0.36765	100.75	100.49	100.86	0					12	8	2	0	0	0	0.026665	1	11191	11191		51.335	29.376	1	376940			8915	2935	7290	7300	9900	9900					0.01258171698100341
EPEATVQIR	9	Unmodified	_EPEATVQIR_					0	0	0			REV__ENSG00000198142|ENST00000356454|SOWAHC	REV__ENSG00000198142|ENST00000356454|SOWAHC	MULTI-SECPEP	OvCa9_classI_Rep3	3	522.3389892578125	2	521.780013	1041.54547	0.44001	0.00022959	-1.0697	-0.00055813	-0.62966	-0.00032854	521.7796772649364	106.35	1.1716	105.09	104.59	105.76	-1.267					35	22	2	0	0	0	0.027462	1	7542	7542		25.574	0	1	43097	+		8916	22993	7291	7301	9901	9901					0.02636251092258135
EPELAKVLVF	10	Unmodified	_EPELAKVLVF_					0	0	0			REV__NDN|p.A166V|1|0.36|ENSG00000182636|chr15:23686721-23686721|G/A|missense_variant	REV__NDN|p.A166V|1|0.36|ENSG00000182636|chr15:23686721-23686721|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.2647094726562	2	572.834257	1143.65396	1.2371	0.00070867	-1.7486	-0.0010016	-0.51143	-0.00029296	572.8331383580613	80.878	0.50379	80.878	80.744	81.248	0					16	11	2	0	0	0	0.02661	1	8321	8321		49.442	0	1	361780	+		8917	29246	7292	7302	9902	9902					0.08788042342712288
EPELHHNQN	9	Unmodified	_EPELHHNQN_					0	0	0			REV__ENST00000465727.5_1_1:1152894-1153089:-|nuORF	REV__ENST00000465727.5_1_1:1152894-1153089:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.25390625	2	559.254694	1116.49483	-1.1956	-0.00066864	-0.029261	-1.6364E-05	-1.2248	-0.000685	559.2534970587507	148.75	0.54373	147.31	147.03	147.57	-1.4344					35	10	5	0	0	0	0.69895	1	14687	14687		18.324	1.8513	1	34461	+		8918	17030	7293	7303	9903	9903					-0.05875278232724668
EPELHHNQN	9	Unmodified	_EPELHHNQN_					0	0	0			REV__ENST00000465727.5_1_1:1152894-1153089:-|nuORF	REV__ENST00000465727.5_1_1:1152894-1153089:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	559.254694	1116.49483	-2.1292	-0.0011907	-0.32122	-0.00017964	-2.4504	-0.0013704	559.2539191449597	147.57	0.84375	147.35	147.07	147.92	-0.22696	0.031471	-0.0010831	NaN	18.324	28	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27028	+		8919	17030	7293	7303							-0.05875278232724668
EPELHHNQN	9	Unmodified	_EPELHHNQN_					0	0	0			REV__ENST00000465727.5_1_1:1152894-1153089:-|nuORF	REV__ENST00000465727.5_1_1:1152894-1153089:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	559.254694	1116.49483	-4.3307	-0.002422	2.3394	0.0013083	-1.9913	-0.0011136	559.2551673608407	148.24	0.64804	147.29	147	147.65	-0.9512	-0.029086	0.0018927	NaN	18.324	29	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27775	+		8920	17030	7293	7303							-0.05875278232724668
EPELHHNQN	9	Unmodified	_EPELHHNQN_					0	0	0			REV__ENST00000465727.5_1_1:1152894-1153089:-|nuORF	REV__ENST00000465727.5_1_1:1152894-1153089:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	559.254694	1116.49483	-1.1956	-0.00066864	-0.029261	-1.6364E-05	-1.2248	-0.000685	559.2534970587507	148.75	0.54373	147.31	147.03	147.57	-1.4344	-0.0023855	-0.00075659	NaN	18.324	35	10	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34461	+		8921	17030	7293	7303							-0.05875278232724668
EPELTLDVPA	10	Unmodified	_EPELTLDVPA_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.805908203125	2	542.282054	1082.54956	0.54686	0.00029655	2.1778	0.001181	2.7247	0.0014775	542.2832284536555	79.989	0.65177	77.649	77.412	78.063	-2.3399					21	12	2	0	0	0	0.026982	1	4329	4329		10.866	0	1	26963	+		8922	23342	7294	7304	9904	9904					0.011582957953123696
EPELVFRY	8	Unmodified	_EPELVFRY_					0	0	0			REV__ENSG00000102595|ENST00000376747|UGGT2	REV__ENSG00000102595|ENST00000376747|UGGT2	MULTI-SECPEP	OvCa9_classI_Rep2	2	527.3539428710938	2	526.7742	1051.53385	-1.3154	-0.00069291	-2.9764	-0.0015679	-4.2918	-0.0022608	526.7726355866058	84.42	1.3226	82.873	82.275	83.597	-1.5462					51	25	3	0	0	0	0.028476	1	7210	7210		60.294	23.265	1	112190	+		8923	17565	7295	7305	9905	9905					0.010140540689462796
EPELVFRY	8	Unmodified	_EPELVFRY_					0	0	0			REV__ENSG00000102595|ENST00000376747|UGGT2	REV__ENSG00000102595|ENST00000376747|UGGT2	MULTI-SECPEP	OvCa9_classI_Rep3	3	527.35595703125	2	526.7742	1051.53385	-1.6652	-0.0008772	-2.3539	-0.00124	-4.0191	-0.0021172	526.7728103994796	84.789	2.0863	82.528	82.21	84.296	-2.261					71	41	3	0	0	0	0.028476	1	4949	4949		50.025	28.065	1	233180	+		8924	17565	7295	7305	9906	9906					0.010140540689462796
EPEMAKLLV	9	Unmodified	_EPEMAKLLV_					0	0	0			REV__ENSG00000095951|ENST00000379388|HIVEP1	REV__ENSG00000095951|ENST00000379388|HIVEP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7257080078125	2	515.286085	1028.55762	-0.5547	-0.00028583	4.4728	0.0023048	3.9181	0.0020189	515.2881071635896	35.347	0.60882	35.347	35.052	35.661	0					25	12	3	0	0	0	0.027455	1	1795	1795		42.396	8.8806	1	328550	+		8925	17299	7296	7306	9907	9907					0.044481515111101544
EPEMKPLES	9	Unmodified	_EPEMKPLES_					0	0	0		ENSG00000117877|ENST00000309424|POLR1G;nc|ENSG00000117877|O15446-2|POLR1G	ENSG00000117877|ENST00000309424|POLR1G	ENSG00000117877|ENST00000309424|POLR1G	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.809814453125	2	530.254982	1058.49541	2.3795	0.0012617	0.42178	0.00022365	2.8013	0.0014854	530.2558259135412	95.906	0.21326	95.906	95.826	96.039	0					7	4	2	0	0	0	0.027448	1	10487	10487		35.618	0	1	216110			8926	3282	7297	7307	9908	9908					-0.031496196279022115
EPEPEYLPH	9	Unmodified	_EPEPEYLPH_					0	0	0			REV__AHDC1|p.M539Sfs*46|1|0.61|ENSG00000126705|chr1:27550500-27550500|A/-|frameshift_variant;REV__ENSG00000126705|ENST00000673934|AHDC1	REV__AHDC1|p.M539Sfs*46|1|0.61|ENSG00000126705|chr1:27550500-27550500|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.8685302734375	2	555.758746	1109.50294	1.3761	0.00076478	-1.9216	-0.001068	-0.54554	-0.00030319	555.7576555763669	36.428	0.79809	33.579	33.139	33.937	-2.849					25	15	2	0	0	0	0.027462	1	1213	1213		23.042	0	1	18189	+		8927	15580;18791	7298	7308	9909	9909					-0.04743144035955993
EPEPPRVP	8	Unmodified	_EPEPPRVP_					0	0	0		ENSG00000103326|ENST00000219611|CAPN15;nc|ENSG00000103326|O75808-2|CAPN15	ENSG00000103326|ENST00000219611|CAPN15	ENSG00000103326|ENST00000219611|CAPN15	MULTI-MSMS	OvCa99_classI_Rep5	1	460.7458190917969	2	460.745442	919.476331	0.94544	0.00043561	-2.0283	-0.00093455	-1.0829	-0.00049894	460.7443095713129	131.74	0.69954	131.74	131.48	132.18	0					29	14	3	0	0	0	0.7043	1	15311	15311		42.474	3.6683	1	180700			8928	2308	7299	7309	9910	9910					0.013372118633810715
EPEPVRTHEM	10	Unmodified	_EPEPVRTHEM_					0	0	0		nc|ENSG00000079337|O95398-2|RAPGEF3;ENST00000479866.5_1_12:48143124-48152369:-|nuORF;ENST00000482843.5_1_12:48142600-48152369:-|nuORF;RAPGEF3|p.R534Hfs*47|1|0.07|ENSG00000079337|chr12:47744064-47744065|-/AAGACCAGCTACTCTCACTGTGT|frameshift_variant;nc|ENSG00000079337|O95398-3|RAPGEF3;ENSG00000079337|ENST00000449771|RAPGEF3	nc|ENSG00000079337|O95398-2|RAPGEF3	nc|ENSG00000079337|O95398-2|RAPGEF3	MULTI-SECPEP	OvCa99_classI_Rep5	1	611.8258056640625	2	612.787512	1223.56047	-0.27976	-0.00017143	-0.15481	-9.4863E-05	-0.43457	-0.0002663	612.7873929981059	61.479	1.5912	61.479	60.277	61.869	0					65	37	2	0	0	0	0.026968	1	5450	5450		36.447	4.9169	1	910600			8929	14897	7300	7310	9911	9911					-0.04236625102043945
EPERTKTL	8	Unmodified	_EPERTKTL_					0	0	0		ENSG00000268182|ENST00000598409|SMIM17	ENSG00000268182|ENST00000598409|SMIM17	ENSG00000268182|ENST00000598409|SMIM17	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.259521484375	2	487.269281	972.52401	2.488	0.0012123	4.2572	0.0020744	6.7452	0.0032867	487.2712056919762	94.339	1.3194	94.339	94.051	95.37	0					56	30	3	0	0	0	0.028476	1	10402	10402		35.618	0	1	1748500			8930	9537	7301	7311	9912	9912					0.03664866063570571
EPESEQGLPA	10	Unmodified	_EPESEQGLPA_					0	0	0			REV__sp|P16766|UL35_HCMVAProteinUL35OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL35PE=1SV=1	REV__sp|P16766|UL35_HCMVAProteinUL35OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL35PE=1SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.3038940429688	2	528.745836	1055.47712	-0.78135	-0.00041314	1.387	0.00073335	0.60561	0.00032021	528.7462654094321	94.868	0.90324	92.972	92.712	93.615	-1.8956					30	17	2	0	0	0	0.026891	1	6224	6224		39.253	20.928	1	51982	+		8931	29405	7302	7312	9913	9913					-0.04840038278234715
EPESEQGLPA	10	Unmodified	_EPESEQGLPA_					0	0	0			REV__sp|P16766|UL35_HCMVAProteinUL35OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL35PE=1SV=1	REV__sp|P16766|UL35_HCMVAProteinUL35OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL35PE=1SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	528.745836	1055.47712	-0.87365	-0.00046194	1.6518	0.00087336	0.77812	0.00041143	528.7462903465339	94.116	0.76049	93.017	92.749	93.509	-1.0995	0.024909	-0.00024003	NaN	31.53	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34636	+		8932	29405	7302	7312							-0.04840038278234715
EPESEQGLPA	10	Unmodified	_EPESEQGLPA_					0	0	0			REV__sp|P16766|UL35_HCMVAProteinUL35OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL35PE=1SV=1	REV__sp|P16766|UL35_HCMVAProteinUL35OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL35PE=1SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	528.745836	1055.47712	-2.0116	-0.0010636	2.6079	0.0013789	0.59629	0.00031529	528.7468619134194	95.455	0.90498	92.987	92.611	93.516	-2.4685	-0.0050572	0.00077102	NaN	31.53	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38510	+		8933	29405	7302	7312							-0.04840038278234715
EPETESEPE	9	Unmodified	_EPETESEPE_					0	0	0		ENSG00000085511|ENST00000392142|MAP3K4;nc|ENSG00000085511|Q9Y6R4-2|MAP3K4;MAP3K4|p.L1291Qfs*13|1|0.15|ENSG00000085511|chr6:161106528-161106555|CTAGGACCCATAGAAGCTATCCAGAAGT/-|frameshift_variant	ENSG00000085511|ENST00000392142|MAP3K4	ENSG00000085511|ENST00000392142|MAP3K4	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.31298828125	2	523.711659	1045.40876	-0.36875	-0.00019312	-2.6063	-0.001365	-2.9751	-0.0015581	523.7100463679005	121.77	0.59438	121.57	121.35	121.94	-0.19718					16	11	2	0	0	0	0.027462	1	11764	11764		27.882	0	1	13961			8934	1732	7303	7313	9914	9914					-0.11212327648740938
EPETKPVPE	9	Unmodified	_EPETKPVPE_					0	0	0			REV__ENST00000530163.1_1_11:74340223-74351808:+|nuORF	REV__ENST00000530163.1_1_11:74340223-74351808:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.2958374023438	2	513.261122	1024.50769	-1.0354	-0.00053144	-1.5698	-0.00080569	-2.6052	-0.0013371	513.2601151135157	41.342	0.62195	38.362	38.023	38.645	-2.9804					17	11	2	0	0	0	0.027453	1	1874	1874		54.776	15.523	1	31565	+		8935	17013	7304	7314	9915	9915					-0.0035825989318709617
EPETKPVPE	9	Unmodified	_EPETKPVPE_					0	0	0			REV__ENST00000530163.1_1_11:74340223-74351808:+|nuORF	REV__ENST00000530163.1_1_11:74340223-74351808:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	513.261122	1024.50769	0.58847	0.00030204	-3.3537	-0.0017213	-2.7652	-0.0014193	513.2596529438953	41.159	0.29535	38.449	38.29	38.586	-2.7097	0.043644	-0.00054694	NaN	54.776	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9965.9	+		8936	17013	7304	7314							-0.0035825989318709617
EPEVLQVLE	9	Unmodified	_EPEVLQVLE_					0	0	0		nc|ENSG00000128881|Q6IQ55-2|TTBK2;ENSG00000128881|ENST00000267890|TTBK2	nc|ENSG00000128881|Q6IQ55-2|TTBK2	nc|ENSG00000128881|Q6IQ55-2|TTBK2	MULTI-MSMS	OvCa99_classI_Rep5	1	528.285888671875	2	528.284597	1054.55464	1.1288	0.00059635	1.0858	0.00057359	2.2146	0.0011699	528.2850129622892	143.59	1.4728	143.59	142.69	144.16	0					63	29	4	0	0	0	0.064985	2	16784	16763;16784		110.12	13.929	1	1310400			8937	3910	7305	7315	9916;9917	9917					0.029545996579372513
EPEWVKTE	8	Unmodified	_EPEWVKTE_					0	0	0		nc|ENSG00000128595|O43852-15|CALU;nc|ENSG00000128595|O43852-2|CALU;ENSG00000128595|ENST00000249364|CALU;nc|ENSG00000128595|O43852-4|CALU;nc|ENSG00000128595|O43852-3|CALU	nc|ENSG00000128595|O43852-15|CALU	nc|ENSG00000128595|O43852-15|CALU	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.30352783203125	2	509.248015	1016.48148	-0.46013	-0.00023432	-3.0726	-0.0015647	-3.5327	-0.001799	509.2463971883266	38.376	0.41199	38.376	38.207	38.619	0					16	8	3	0	0	0	0.028476	1	2171	2171		7.6903	0	1	124550			8938	3891	7306	7316	9918	9918					-0.0261052906465693
EPFCYNDLL	9	Unmodified	_EPFCYNDLL_					0	0	0			REV__ENSG00000265203|ENST00000584701|RBP3	REV__ENSG00000265203|ENST00000584701|RBP3	MULTI-MSMS	OvCa99_classI_Rep5	1	557.2542724609375	2	557.2497	1112.48485	1.581	0.00088103	4.2979	0.002395	5.879	0.003276	557.251899350708	138.71	1.0102	138.71	138.4	139.41	0					41	20	4	0	0	0	0.3076	1	16182	16182		62.107	15.341	1	564290	+		8939	23582	7307	7317	9919	9919					-0.0668960228231299
EPFDNSMPEI	10	Unmodified	_EPFDNSMPEI_					0	0	0		tr|A0A553SSW4|A0A553SSW4_NIACISulfataseOS=NialliacirculansOX=1397GN=CEQ21_03910PE=4SV=1	tr|A0A553SSW4|A0A553SSW4_NIACISulfataseOS=NialliacirculansOX=1397GN=CEQ21_03910PE=4SV=1	tr|A0A553SSW4|A0A553SSW4_NIACISulfataseOS=NialliacirculansOX=1397GN=CEQ21_03910PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	589.7554321289062	2	589.755346	1177.49614	2.0537	0.0012112	-2.5672	-0.001514	-0.51343	-0.0003028	589.7537466531886	100.18	0.50551	100.18	99.939	100.44	0					29	11	3	0	0	0	0.32926	1	11093	11093		77.318	3.0625	1	1656800			8940	34427	7308	7318	9920	9920					-0.08550824978829041
EPFEIVERV	9	Unmodified	_EPFEIVERV_					0	0	0		ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.8301391601562	2	559.298039	1116.58152	0.19355	0.00010825	3.5569	0.0019894	3.7505	0.0020976	559.2993880276314	44.749	0.53848	44.749	44.484	45.023	0					24	11	3	0	0	0	0.027462	1	3029	3029		20.947	0	1	266820			8941	5218	7309	7319	9921	9921					0.027897082691424657
EPFENVLDL	9	Unmodified	_EPFENVLDL_					0	0	0			REV__ENST00000442255.5_1_3:16313687-16345066:+|nuORF	REV__ENST00000442255.5_1_3:16313687-16345066:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.619384765625	2	538.268947	1074.52334	-0.092539	-4.9811E-05	-4.1609	-0.0022397	-4.2534	-0.0022895	538.2668984463428	60.579	0.37737	60.579	60.352	60.73	0					12	8	2	0	0	0	0.027462	1	5267	5267		12.207	3.0238	1	287180	+		8942	20399	7310	7320	9922	9922					-0.010939733761233583
EPFIVRIGQ	9	Unmodified	_EPFIVRIGQ_					0	0	0		tr|A0A7D6ZUG9|A0A7D6ZUG9_9CLOTDNA(cytosine-5-)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11895PE=3SV=1	tr|A0A7D6ZUG9|A0A7D6ZUG9_9CLOTDNA(cytosine-5-)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11895PE=3SV=1	tr|A0A7D6ZUG9|A0A7D6ZUG9_9CLOTDNA(cytosine-5-)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11895PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.2838134765625	2	529.803291	1057.59203	-1.5303	-0.00081074	3.2422	0.0017177	1.712	0.00090701	529.8049119263407	88.988	0.98899	86.385	85.933	86.922	-2.6027					50	19	3	0	0	0	0.027462	1	7576	7576		24.203	3.7209	1	172310			8943	35774	7311	7321	9923	9923					0.06553735714237519
EPFIVRIGQ	9	Unmodified	_EPFIVRIGQ_					0	0	0		tr|A0A7D6ZUG9|A0A7D6ZUG9_9CLOTDNA(cytosine-5-)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11895PE=3SV=1	tr|A0A7D6ZUG9|A0A7D6ZUG9_9CLOTDNA(cytosine-5-)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11895PE=3SV=1	tr|A0A7D6ZUG9|A0A7D6ZUG9_9CLOTDNA(cytosine-5-)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11895PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	529.803291	1057.59203	0.95315	0.00050498	0.84489	0.00044762	1.798	0.0009526	529.8037210354934	87.777	0.9341	86.346	85.891	86.825	-1.4311	-0.03424	-0.0012208	NaN	24.203	33	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94879			8944	35774	7311	7321							0.06553735714237519
EPFIVRIGQ	9	Unmodified	_EPFIVRIGQ_					0	0	0		tr|A0A7D6ZUG9|A0A7D6ZUG9_9CLOTDNA(cytosine-5-)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11895PE=3SV=1	tr|A0A7D6ZUG9|A0A7D6ZUG9_9CLOTDNA(cytosine-5-)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11895PE=3SV=1	tr|A0A7D6ZUG9|A0A7D6ZUG9_9CLOTDNA(cytosine-5-)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11895PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	529.803291	1057.59203	-0.4769	-0.00025266	2.0876	0.001106	1.6107	0.00085337	529.8044520821959	88.54	1.0843	86.41	86.009	87.093	-2.1309	0.029471	9.6024E-05	NaN	24.203	54	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181330			8945	35774	7311	7321							0.06553735714237519
EPFLAYLYLE	10	Unmodified	_EPFLAYLYLE_					0	0	0		ENST00000383693.7_1_3:100120740-100120839:+|nuORF	ENST00000383693.7_1_3:100120740-100120839:+|nuORF	ENST00000383693.7_1_3:100120740-100120839:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	629.3232421875	2	629.323722	1256.63289	2.0886	0.0013144	-3.4196	-0.0021521	-1.3311	-0.00083768	629.3215805374701	129.03	1.5921	129.03	128.61	130.2	0					118	33	5	0	0	0	0.41408	1	14944	14944		66.429	9.7082	1	4016500			8946	11187	7312	7322	9924	9924					0.01484032243160982
EPFLIPYLS	9	Unmodified	_EPFLIPYLS_					0	0	0		ENST00000477697.1_1_2:228566878-228582713:-|nuORF;SLC19A3|p.Y123Sfs*17|1|0.05|ENSG00000135917|chr2:227699347-227699347|T/-|frameshift_variant;ENSG00000135917|ENST00000644224|SLC19A3	ENST00000477697.1_1_2:228566878-228582713:-|nuORF	ENST00000477697.1_1_2:228566878-228582713:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.2738647460938	2	539.794601	1077.57465	-1.6467	-0.00088888	0.09781	5.2797E-05	-1.5489	-0.00083608	539.7944410546182	71.483	0.78169	68.027	67.776	68.558	-3.4563					21	15	2	0	0	0	0.027462	1	5428	5428		23.042	0	1	54902			8947	4430	7313	7323	9925	9925					0.03896395388551355
EPFLIPYLS	9	Unmodified	_EPFLIPYLS_					0	0	0		ENST00000477697.1_1_2:228566878-228582713:-|nuORF;SLC19A3|p.Y123Sfs*17|1|0.05|ENSG00000135917|chr2:227699347-227699347|T/-|frameshift_variant;ENSG00000135917|ENST00000644224|SLC19A3	ENST00000477697.1_1_2:228566878-228582713:-|nuORF	ENST00000477697.1_1_2:228566878-228582713:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	539.794601	1077.57465	-0.45211	-0.00024405	-0.28535	-0.00015403	-0.73746	-0.00039808	539.7947058982553	70.551	0.80939	67.98	67.512	68.322	-2.5707	-0.02308	-0.0003347	NaN	29.15	32	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14208			8948	4430	7313	7323							0.03896395388551355
EPFLKKRPH	9	Unmodified	_EPFLKKRPH_					0	0	0			REV__ENSG00000164168|ENST00000296582|TMEM184C	REV__ENSG00000164168|ENST00000296582|TMEM184C	MULTI-MSMS	OvCa99_classI_Rep5	1	576.3352661132812	2	576.337833	1150.66111	-0.44237	-0.00025495	-3.8081	-0.0021948	-4.2505	-0.0024497	576.3354888641999	30.111	0.39827	30.111	29.935	30.334	0					22	7	4	0	0	0	0.63422	1	1135	1135		27.882	1.1893	1	314940	+		8949	20952	7314	7324	9926	9926					0.09180819733796852
EPFLKKRPH	9	Unmodified	_EPFLKKRPH_					0	0	0			REV__ENSG00000164168|ENST00000296582|TMEM184C	REV__ENSG00000164168|ENST00000296582|TMEM184C	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	576.337833	1150.66111	-0.44237	-0.00025495	-3.8081	-0.0021948	-4.2505	-0.0024497	576.3354888641999	30.111	0.39827	30.111	29.935	30.334	0	0	0	NaN	27.882	22	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	314940	+		8950	20952	7314	7324							0.09180819733796852
EPFLQKVAL	9	Unmodified	_EPFLQKVAL_					0	0	0			REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.3154907226562	2	522.808042	1043.60153	-0.85326	-0.00044609	-3.6752	-0.0019214	-4.5284	-0.0023675	522.8060517130161	55.662	0.98156	55.662	55.358	56.34	0					77	23	5	0	0	0	0.027426	1	4526	4526		66.429	4.738	1	27365000	+		8951	28721	7315	7325	9927	9927					0.08147503999748551
EPFNREIIK	9	Unmodified	_EPFNREIIK_					0	0	0			REV__ENSG00000269437|ENST00000602195|NXF2B	REV__ENSG00000269437|ENST00000602195|NXF2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.8421630859375	2	573.319306	1144.62406	1.4834	0.00085046	0.7451	0.00042718	2.2285	0.0012776	573.3196313521768	78.855	0.62004	78.855	78.54	79.16	0					30	12	3	0	0	0	0.027411	1	8057	8057		54.776	0	1	913360	+		8952	23601	7316	7326	9928	9928					0.05753103397364612
EPFSQWVT	8	Unmodified	_EPFSQWVT_					0	0	0			REV__ENSG00000182197|ENST00000378204|EXT1	REV__ENSG00000182197|ENST00000378204|EXT1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.282958984375	2	497.23745	992.460347	3.3199	0.0016508	-2.9319	-0.0014579	0.38804	0.00019295	497.2357806515904	133.69	0.83228	132.17	131.85	132.69	-1.5257					20	16	2	0	0	0	0.028476	1	12919	12919		38.806	3.1879	1	10730	+		8953	22268	7317	7327	9929	9929					-0.03618494373529302
EPFVFYIL	8	Unmodified	_EPFVFYIL_					0	0	0		ENST00000538768.2_1_16:31138259-31142577:+|nuORF;ENSG00000103510|ENST00000219797|KAT8;nc|ENSG00000103510|Q9H7Z6-2|KAT8	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.2958374023438	2	514.278586	1026.54262	-1.0682	-0.00054933	3.6508	0.0018775	2.5826	0.0013282	514.2803354121114	41.326	1.04	38.346	38.127	39.167	-2.9804					34	19	2	0	0	0	0.028476	1	1874	1874		28.254	0	1	245260			8954	2323	7318	7328	9930	9930					0.030410277054443213
EPFVSLIESH	10	Unmodified	_EPFVSLIESH_					0	0	0			REV__PKHD1|p.A3983Kfs*44|1|0.16|ENSG00000170927|chr6:51619327-51619360|CAGGTACACCTGCTGAGCAGGAGCACCTGGAGCA/-|frameshift_variant;REV__PKHD1|p.P2004Hfs*49|1|0.03|ENSG00000170927|chr6:51934220-51934221|-/T|frameshift_variant	REV__PKHD1|p.A3983Kfs*44|1|0.16|ENSG00000170927|chr6:51619327-51619360|CAGGTACACCTGCTGAGCAGGAGCACCTGGAGCA/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	578.8552856445312	2	579.295496	1156.57644	-0.94697	-0.00054858	0.85435	0.00049492	-0.092625	-5.3657E-05	579.7970485475759	74.239	0.41917	72.268	72.062	72.481	-1.9711					12	7	2	0	0	0	0.026994	1	6065	6065		19.104	0	1	18938	+		8955	21578;29299	7319	7329	9931	9931					0.004414044065242706
EPGAAKALLL	10	Unmodified	_EPGAAKALLL_					0	0	0			REV__ENSG00000165118|ENST00000376344|C9orf64	REV__ENSG00000165118|ENST00000376344|C9orf64	MULTI-MSMS	OvCa9_classI_Rep2	2	491.8002014160156	2	491.800217	981.585882	0.45767	0.00022508	-0.86132	-0.0004236	-0.40365	-0.00019852	491.7997614216502	106.26	3.1068	105.82	105.5	108.61	-0.43642					130	62	3	0	0	0	0.49558	1	9897	9897		54.776	1.4249	1	1827600	+		8956	21059	7320	7330	9932	9932					0.09435217482700864
EPGAGLQLLT	10	Unmodified	_EPGAGLQLLT_					0	0	0		nc|ENSG00000211779|A0A0B4J249|TRAV5	nc|ENSG00000211779|A0A0B4J249|TRAV5	nc|ENSG00000211779|A0A0B4J249|TRAV5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.25970458984375	2	499.779482	997.544411	0.23139	0.00011564	-1.2129	-0.00060618	-0.98151	-0.00049054	499.7788138298198	89.562	0.29803	86.987	86.752	87.05	-2.575					8	5	2	0	0	0	0.02676	1	7677	7677		33.922	14.562	1	30706			8957	15292	7321	7331	9933	9933					0.04554036723379795
EPGARVQTL	9	Unmodified	_EPGARVQTL_					0	0	0			REV__ENST00000526246.5_1_11:66099749-66102792:-|nuORF	REV__ENST00000526246.5_1_11:66099749-66102792:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.298095703125	2	485.769448	969.524344	0.4185	0.0002033	-0.59102	-0.0002871	-0.17252	-8.3804E-05	485.76900316124545	67.003	1.5268	63.513	62.708	64.235	-3.4902					53	30	3	0	0	0	0.027462	1	4982	4982		10.265	7.106	1	256620	+		8958	21852	7322	7332	9934	9934					0.03836285783427229
EPGARVQTL	9	Unmodified	_EPGARVQTL_					0	0	0			REV__ENST00000526246.5_1_11:66099749-66102792:-|nuORF	REV__ENST00000526246.5_1_11:66099749-66102792:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	485.769448	969.524344	0.50448	0.00024506	-0.66828	-0.00032463	-0.1638	-7.9568E-05	485.7688582570284	63.485	0.34953	63.485	63.257	63.607	0	-0.061507	9.4729E-06	NaN	5.9211	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325940	+		8959	21852	7322	7332							0.03836285783427229
EPGARVQTL	9	Unmodified	_EPGARVQTL_					0	0	0			REV__ENST00000526246.5_1_11:66099749-66102792:-|nuORF	REV__ENST00000526246.5_1_11:66099749-66102792:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	485.769448	969.524344	0.71708	0.00034834	-0.86859	-0.00042194	-0.15151	-7.3598E-05	485.769009486616	66.337	0.84513	63.641	63.269	64.114	-2.6958	0.094867	-0.00018514	NaN	5.9211	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61208	+		8960	21852	7322	7332							0.03836285783427229
EPGCSVLL	8	Unmodified	_EPGCSVLL_					0	0	0		nc|ENSG00000100764|P62191-2|PSMC1;ENSG00000100764|ENST00000261303|PSMC1;ENST00000555679.5_1_14:90722941-90730197:+|nuORF	nc|ENSG00000100764|P62191-2|PSMC1	nc|ENSG00000100764|P62191-2|PSMC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	409.72222900390625	2	409.209847	816.40514	0.47286	0.0001935	-4.2584	-0.0017426	-3.7855	-0.0015491	409.2063498807584	41.745	0.25951	41.745	41.594	41.853	0					7	5	2	0	0	0	0.028476	1	2634	2634		13.775	0	1	28807			8961	2103	7323	7333	9935	9935					-0.010406241656369275
EPGERPQLV	9	Unmodified	_EPGERPQLV_					0	0	0		nc|ENSG00000147144|Q96HB5-2|CCDC120;nc|ENSG00000147144|Q96HB5|CCDC120;nc|ENSG00000147144|Q96HB5-5|CCDC120;nc|ENSG00000147144|Q96HB5-3|CCDC120;ENSG00000147144|ENST00000603986|CCDC120;ENST00000603906.1_1_X:48916566-48926191:+|nuORF	nc|ENSG00000147144|Q96HB5-2|CCDC120	nc|ENSG00000147144|Q96HB5-2|CCDC120	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.8114013671875	2	512.774731	1023.53491	-0.18222	-9.3439E-05	0.2419	0.00012404	0.059679	3.0602E-05	512.7747187258168	64.386	3.7798	60.911	59.433	63.213	-3.475					173	77	3	0	0	0	0.027453	1	4489	4489		54.776	12.38	1	259870			8962	5335	7324	7334	9936	9936					0.02408268437852712
EPGGGEGGKR	10	Unmodified	_EPGGGEGGKR_					0	0	0		ENST00000316059.6_1_11:58346586-58346646:+|nuORF	ENST00000316059.6_1_11:58346586-58346646:+|nuORF	ENST00000316059.6_1_11:58346586-58346646:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.2700500488281	2	472.23323	942.451907	-0.31722	-0.0001498	0.38086	0.00017986	0.06364	3.0053E-05	472.23348354309024	41.407	0.39893	41.407	41.195	41.594	0					18	8	3	0	0	0	0.026635	1	2587	2587		39.253	18.306	1	181350			8963	10339	7325	7335	9937	9937					-0.021620482901312243
EPGGRRPGP	9	Unmodified	_EPGGRRPGP_					0	0	0		ENST00000380874.3_1_6:1612095-1612257:+|nuORF	ENST00000380874.3_1_6:1612095-1612257:+|nuORF	ENST00000380874.3_1_6:1612095-1612257:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	461.74493408203125	2	461.746308	921.478063	-0.9628	-0.00044457	-2.3391	-0.0010801	-3.3019	-0.0015246	461.74509928976033	117.12	2.1532	115.76	115.46	117.61	-1.3645					88	40	4	0	0	0	0.53483	1	10996	10996		39.253	2.0937	1	521240			8964	11153	7326	7336	9938	9938					0.014182656719981424
EPGLPGYPGNP	11	Unmodified	_EPGLPGYPGNP_					0	0	0		nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5	nc|ENSG00000188153|P29400|COL4A5	nc|ENSG00000188153|P29400|COL4A5	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.8401489257812	2	549.266739	1096.51892	1.7126	0.00094065	0.25004	0.00013734	1.9626	0.001078	549.2666982275354	115.47	0.74787	115.47	115.07	115.82	0					21	15	2	0	0	0	0.025638	1	13231	13231		30.318	4.8675	1	188930			8965	8453	7327	7337	9939	9939					-0.025474377990576613
EPGLPGYPGNP	11	Unmodified	_EPGLPGYPGNP_					0	0	0		nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5	nc|ENSG00000188153|P29400|COL4A5	nc|ENSG00000188153|P29400|COL4A5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	549.266739	1096.51892	-0.26543	-0.00014579	-0.62358	-0.00034251	-0.88901	-0.0004883	549.2664911006411	115.53	0.44418	115.42	115.24	115.69	-0.11777	0.04704	-0.00065463	NaN	22.58	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11778			8966	8453	7327	7337							-0.025474377990576613
EPGLPGYPGNP	11	Unmodified	_EPGLPGYPGNP_					0	0	0		nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5	nc|ENSG00000188153|P29400|COL4A5	nc|ENSG00000188153|P29400|COL4A5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	549.266739	1096.51892	-1.0978	-0.00060297	0.49105	0.00026972	-0.60671	-0.00033325	549.2668973039263	116.38	0.4441	115.34	115.09	115.54	-1.0414	-0.029454	0.00056984	NaN	22.58	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11926			8967	8453	7327	7337							-0.025474377990576613
EPGMLGPHN	9	Unmodified	_EPGMLGPHN_					0	0	0		ENSG00000115297|ENST00000233638|TLX2	ENSG00000115297|ENST00000233638|TLX2	ENSG00000115297|ENST00000233638|TLX2	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.22088623046875	2	476.221277	950.428001	-0.0085798	-4.0859E-06	1.2112	0.0005768	1.2026	0.00057272	476.2212710661232	117.16	1.4682	115.79	115.51	116.98	-1.3645					61	27	3	0	0	0	0.53957	1	10944	10944		38.806	1.647	1	254610			8968	3082	7328	7338	9940	9940					-0.049196050481555176
EPGPLFTYVFA	11	Unmodified	_EPGPLFTYVFA_					0	0	0		tr|A0A553SQB9|A0A553SQB9_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26305PE=4SV=1	tr|A0A553SQB9|A0A553SQB9_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26305PE=4SV=1	tr|A0A553SQB9|A0A553SQB9_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26305PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	620.8174438476562	2	620.816064	1239.61758	-1.695	-0.0010523	3.9293	0.0024394	2.2343	0.0013871	620.818422631297	38.889	1.3375	36.18	35.915	37.252	-2.7097					75	26	4	0	0	0	0.54764	1	1852	1852		49.442	1.7842	1	501820			8969	34144	7329	7339	9941	9941					0.007351654460080681
EPGPLVLVLVN	11	Unmodified	_EPGPLVLVLVN_					0	0	0			REV__ENSG00000167378|ENST00000422989|IRGQ	REV__ENSG00000167378|ENST00000422989|IRGQ	MULTI-MSMS	OvCa99_classI_Rep5	1	575.3472900390625	2	575.347532	1148.68051	0.41999	0.00024164	-2.5594	-0.0014725	-2.1394	-0.0012309	575.345898604362	159.91	1.5859	159.91	159.52	161.11	0					89	31	5	0	0	0	0.71498	1	18831	18831		24.519	3.5723	1	1545400	+		8970	21273	7330	7340	9942	9942					0.1121173123403878
EPGRLLFSL	9	Unmodified	_EPGRLLFSL_					0	0	0			REV__tr|A0A7D7A300|A0A7D7A300_9CLOTMBLfoldmetallo-hydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21495PE=4SV=1	REV__tr|A0A7D7A300|A0A7D7A300_9CLOTMBLfoldmetallo-hydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21495PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.2923583984375	2	516.297842	1030.58113	-1.0414	-0.00053766	-4.0761	-0.0021045	-5.1175	-0.0026422	516.2956379771248	52.171	1.5329	49.358	48.947	50.48	-2.8129					41	30	2	0	0	0	0.027462	1	3509	3509		39.253	24.589	1	50479	+		8971	32561	7331	7341	9943	9943					0.06706333339957382
EPGRLRSH	8	Unmodified	_EPGRLRSH_					0	0	0			REV__ENST00000338099.9_1_16:71319833-71323314:-|nuORF	REV__ENST00000338099.9_1_16:71319833-71323314:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.75799560546875	2	476.259582	950.504612	-0.35169	-0.0001675	-3.4642	-0.0016498	-3.8158	-0.0018173	476.25791719610675	55.338	0.87987	55.338	54.761	55.641	0					38	20	3	0	0	0	0.028476	1	4519	4519		11.511	3.8207	1	908100	+		8972	24604	7332	7342	9944	9944					0.027379545633380076
EPGYAGCCQN	10	Unmodified	_EPGYAGCCQN_					0	0	0			REV__nc|ENSG00000108219|Q8NG11-3|TSPAN14	REV__nc|ENSG00000108219|Q8NG11-3|TSPAN14	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.7640991210938	2	521.191859	1040.36917	-0.34864	-0.00018171	-2.7091	-0.0014119	-3.0577	-0.0015936	521.691103034398	57.544	0.12798	57.544	57.438	57.566	0					4	2	2	0	0	0	0.027174	1	4835	4835		14.865	3.3539	1	74900	+		8973	17876	7333	7343	9945	9945					-0.14940449404798528
EPHEMIDDL	9	Unmodified	_EPHEMIDDL_					0	0	0			REV__ENST00000548316.1_1_12:41903559-41967689:+|nuORF	REV__ENST00000548316.1_1_12:41903559-41967689:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	549.8314819335938	2	549.742239	1097.46993	0.89674	0.00049298	-0.4421	-0.00024304	0.45464	0.00024994	549.7416839843868	71.57	1.1532	69.063	68.646	69.799	-2.5072					42	21	3	0	0	0	0.027462	1	5789	5789		21.96	0	1	57685	+		8974	21143	7334	7344	9946	9946					-0.07491094150304889
EPHFEQSL	8	Unmodified	_EPHFEQSL_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2732849121094	2	493.732532	985.45051	-0.27513	-0.00013584	2.8857	0.0014248	2.6106	0.0012889	493.7341874928338	69.235	0.5286	69.235	69.063	69.591	0					16	12	2	0	0	0	0.028476	1	6574	6574		44.117	0	1	112240	+		8975	22747	7335	7345	9947	9947					-0.04279682378898997
EPHKERQV	8	Unmodified	_EPHKERQV_					0	0	0			REV__ENSG00000109158|ENST00000264318|GABRA4	REV__ENSG00000109158|ENST00000264318|GABRA4	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.3072509765625	2	511.772522	1021.53049	0.62982	0.00032232	-2.0018	-0.0010245	-1.372	-0.00070214	512.272379681836	74.394	0.3434	74.394	74.214	74.557	0					12	8	2	0	0	0	0.028476	1	7346	7346		30.504	0	1	422590	+		8976	17920	7336	7346	9948	9948					0.020588040149505105
EPHSKSTSDKT	11	Unmodified	_EPHSKSTSDKT_					0	0	0			REV__nc|ENSG00000152291|O43493-4|TGOLN2	REV__nc|ENSG00000152291|O43493-4|TGOLN2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	607.8488159179688	2	608.793849	1215.57314	-0.27643	-0.00016829	1.695	0.0010319	1.4186	0.00086364	608.7952254868868	69.816	0.53324	66.334	66.105	66.639	-3.4812					18	10	2	0	0	0	0.025306	1	5263	5263		30.569	1.4193	1	21086	+		8977	20280	7337	7347	9949	9949					-0.026018904381544417
EPHSNFIDYYE	11	Unmodified	_EPHSNFIDYYE_					0	0	0			REV__tr|A0A7D7A1V4|A0A7D7A1V4_9CLOTATPphosphoribosyltransferaseregulatorysubunitOS=ClostridiumintestinaleOX=36845GN=hisZPE=3SV=1	REV__tr|A0A7D7A1V4|A0A7D7A1V4_9CLOTATPphosphoribosyltransferaseregulatorysubunitOS=ClostridiumintestinaleOX=36845GN=hisZPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.7913818359375	3	471.870097	1412.58846	2.7077	0.0012777	-0.22452	-0.00010595	2.4832	0.0011718	471.86979130851194	75.388	0.67367	75.388	75.128	75.801	0					20	16	2	0	0	0	0.025722	1	7492	7492		34.087	13.771	1	421380	+		8978	32510	7338	7348	9950	9950					-0.10133023640923966
EPHVLLVLT	9	Unmodified	_EPHVLLVLT_					0	0	0		ENST00000370888.5_1_6:53787644-53787806:+|nuORF	ENST00000370888.5_1_6:53787644-53787806:+|nuORF	ENST00000370888.5_1_6:53787644-53787806:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.2906494140625	2	510.808042	1019.60153	1.7825	0.00091052	0.34143	0.0001744	2.1239	0.0010849	510.8078639461795	93.139	0.6228	93.139	92.845	93.468	0					25	14	3	0	0	0	0.027462	1	10118	10118		16.473	11.791	1	775080			8979	10940	7339	7349	9951	9951					0.09251503999746546
EPICMRPRI	9	Unmodified	_EPICMRPRI_					0	0	0		ENST00000404625.5_1_7:22765516-22765666:+|nuORF	ENST00000404625.5_1_7:22765516-22765666:+|nuORF	ENST00000404625.5_1_7:22765516-22765666:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	558.2981567382812	2	557.796629	1113.5787	2.4375	0.0013596	-4.2909	-0.0023934	-1.8534	-0.0010338	557.7940345891211	85.259	2.5743	85.259	83.419	85.994	0					157	61	4	0	0	0	0.48324	1	8916	8916		44.117	1.7207	1	5211400			8980	11454	7340	7350	9952	9952					0.026458383390036033
EPIDELPKI	9	Unmodified	_EPIDELPKI_					0	0	0		nc|ENSG00000100478|Q9Y587-3|AP4S1;nc|ENSG00000100478|Q9Y587-2|AP4S1	nc|ENSG00000100478|Q9Y587-3|AP4S1	nc|ENSG00000100478|Q9Y587-3|AP4S1	MULTI-SECPEP	OvCa9_classI_Rep3	3	527.3557739257812	2	527.294965	1052.57538	-1.5707	-0.00082822	-0.39029	-0.0002058	-1.961	-0.001034	527.2949640821724	84.687	0.78339	82.426	82.162	82.945	-2.261					33	15	3	0	0	0	0.027462	1	4937	4937		44.117	8.9161	1	70139			8981	14927	7341	7351	9953	9953					0.05119190037612498
EPIEAPAEEIL	11	Unmodified	_EPIEAPAEEIL_					0	0	0		tr|A0A553SSE9|A0A553SSE9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02995PE=4SV=1	tr|A0A553SSE9|A0A553SSE9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02995PE=4SV=1	tr|A0A553SSE9|A0A553SSE9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02995PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	605.8162841796875	2	605.813719	1209.61288	0.98318	0.00059562	2.3167	0.0014035	3.2999	0.0019991	605.8149294907378	152.12	3.19	152.12	151.74	154.93	0					156	68	3	0	0	0	0.16138	1	17800	17800		85.161	5.4482	1	906760			8982	34368	7342	7352	9954	9954					0.016462365125789802
EPIETLSIT	9	Unmodified	_EPIETLSIT_					0	0	0		tr|A0A553SP65|A0A553SP65_NIACIStk1familyPASTAdomain-containingSer/ThrkinaseOS=NialliacirculansOX=1397GN=pknBPE=4SV=1	tr|A0A553SP65|A0A553SP65_NIACIStk1familyPASTAdomain-containingSer/ThrkinaseOS=NialliacirculansOX=1397GN=pknBPE=4SV=1	tr|A0A553SP65|A0A553SP65_NIACIStk1familyPASTAdomain-containingSer/ThrkinaseOS=NialliacirculansOX=1397GN=pknBPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.79376220703125	2	501.771322	1001.52809	0.83658	0.00041977	-0.044225	-2.2191E-05	0.79235	0.00039758	501.7711500055324	86.027	0.79562	83.381	83.142	83.937	-2.6463					34	15	3	0	0	0	0.027455	1	7324	7324		34.173	0	1	114490			8983	34007	7343	7353	9955	9955					0.027389107666408563
EPIEVFLMN	9	Unmodified	_EPIEVFLMN_					0	0	0			REV__nc|ENSG00000101096|Q13469-5|NFATC2	REV__nc|ENSG00000101096|Q13469-5|NFATC2	MULTI-MSMS	OvCa9_classI_Rep2	2	546.2774658203125	2	546.275718	1090.53688	0.82759	0.00045209	1.7715	0.00096773	2.5991	0.0014198	546.2764511459147	126.98	1.5804	126.75	126.39	127.97	-0.2359					56	31	3	0	0	0	0.33652	1	12403	12403		58.782	11.125	1	114850	+		8984	17472	7344	7354	9956	9956					-0.004764388685543963
EPIKEAVEIP	10	Unmodified	_EPIKEAVEIP_					0	0	0			REV__nc|ENSG00000155966|P51816-7|AFF2	REV__nc|ENSG00000155966|P51816-7|AFF2	MULTI-MSMS	OvCa9_classI_Rep3	3	562.8140258789062	2	562.813522	1123.61249	-2.633	-0.0014819	2.4421	0.0013745	-0.19089	-0.00010744	562.8147781508586	141.55	1.4859	140.54	140.19	141.68	-1.0106					91	29	5	0	0	0	0.48198	1	11705	11705		56.721	0.28726	1	322010	+		8985	20452	7345	7355	9957	9957					0.05562861583371159
EPILSTGSNL	10	Unmodified	_EPILSTGSNL_					0	0	0			REV__tr|A0A553STR0|A0A553STR0_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05475PE=3SV=1	REV__tr|A0A553STR0|A0A553STR0_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05475PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	515.7747802734375	2	515.774396	1029.53424	0.25666	0.00013238	-0.44158	-0.00022776	-0.18492	-9.5376E-05	515.7741357954794	109.36	1.83	109.19	108.52	110.35	-0.17237					68	36	2	0	0	0	0.40664	1	10282	10282		67.494	5.3863	1	218150	+		8986	30999	7346	7356	9958	9958					0.020654289981621332
EPINKPVFL	9	Unmodified	_EPINKPVFL_					0	0	0		tr|A0A7D7AG91|A0A7D7AG91_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08285PE=4SV=1	tr|A0A7D7AG91|A0A7D7AG91_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08285PE=4SV=1	tr|A0A7D7AG91|A0A7D7AG91_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08285PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.80810546875	2	528.808042	1055.60153	-1.3853	-0.00073257	1.1675	0.00061739	-0.21781	-0.00011518	528.8085032032806	144.49	1.3563	143.05	142.58	143.94	-1.4357					48	25	3	0	0	0	0.44294	1	14170	14170		47.916	3.3845	1	88342			8987	36262	7347	7357	9959	9959					0.07595503999755238
EPIPRLVLH	9	Unmodified	_EPIPRLVLH_					0	0	0			REV__ENSG00000072195|ENST00000312358|SPEG	REV__ENSG00000072195|ENST00000312358|SPEG	MULTI-MSMS	OvCa99_classI_Rep5	1	537.32470703125	2	537.326934	1072.63931	-0.055567	-2.9857E-05	-4.1423	-0.0022258	-4.1979	-0.0022556	537.3245814749322	33.16	0.49334	33.16	32.941	33.434	0					28	9	4	0	0	0	0.55588	1	1501	1501		37.159	7.9891	1	418990	+		8988	16913	7348	7358	9960	9960					0.10590014985223206
EPIQLIADCY	10	Unmodified	_EPIQLIADCY_					0	0	0			REV__ENST00000566364.1_1_16:23400243-23404677:-|nuORF	REV__ENST00000566364.1_1_16:23400243-23404677:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	582.7854614257812	2	582.783907	1163.55326	0.22375	0.0001304	2.663	0.0015519	2.8867	0.0016823	582.7853446594718	126.06	1.3576	124.99	124.71	126.07	-1.0715					58	25	3	0	0	0	0.42962	1	9854	9854		64.207	3.2353	1	148130	+		8989	15628	7349	7359	9961	9961					-0.021973577024482438
EPIQYMTPL	9	Unmodified	_EPIQYMTPL_					0	0	0			REV__ENSG00000134250|ENST00000256646|NOTCH2	REV__ENSG00000134250|ENST00000256646|NOTCH2	MSMS	OvCa99_classI_Rep5	1	546.2779541015625	2	546.275718	1090.53688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.38	1	128.38	127.88	128.88	0								0	0	0	0.16939	1	14875	14875		52.937	1.6012	1		+		8990	19188	7350	7360	9962	9962					-0.004764388685543963
EPITFCEEA	9	Carbamidomethyl (C)	_EPITFC(Carbamidomethyl (C))EEA_	EPITFC(1)EEA		EPITFC(110)EEA		0	1	0		nc|ENSG00000119522|Q8TEH3-7|DENND1A;nc|ENSG00000119522|Q8TEH3|DENND1A;ENSG00000119522|ENST00000394215|DENND1A;nc|ENSG00000119522|Q8TEH3-3|DENND1A;nc|ENSG00000119522|Q8TEH3-2|DENND1A;nc|ENSG00000119522|Q8TEH3-6|DENND1A;ENST00000491650.5_1_9:126219181-126371720:-|nuORF;ENST00000479305.5_1_9:126200042-126224279:-|nuORF;ENST00000497135.5_1_9:126173862-126345492:-|nuORF;nc|ENSG00000119522|Q8TEH3-4|DENND1A;nc|ENSG00000119522|Q8TEH3-5|DENND1A	nc|ENSG00000119522|Q8TEH3-7|DENND1A	nc|ENSG00000119522|Q8TEH3-7|DENND1A	MULTI-MSMS	OvCa99_classI_Rep5	1	548.2404174804688	2	548.23679	1094.45903	2.393	0.001312	3.4596	0.0018967	5.8526	0.0032086	548.2384714190089	94.533	0.89731	94.533	94.306	95.204	0					49	20	3	0	0	0	0.068524	1	10294	10294		108.09	33.832	1	2957800			8991	14985	7351	7361	9963	9963	172				-0.0844249652459439
EPITSFVSL	9	Unmodified	_EPITSFVSL_					0	0	0			REV__nc|ENSG00000185760|Q9NR82-2|KCNQ5	REV__nc|ENSG00000185760|Q9NR82-2|KCNQ5	MULTI-MSMS	OvCa99_classI_Rep5	1	497.2705078125	2	496.768583	991.522613	0.82898	0.00041181	1.6523	0.00082083	2.4813	0.0012326	496.7690164624019	153.92	0.72473	153.92	153.45	154.17	0					24	14	3	0	0	0	0.48324	1	18048	18048		44.117	6.9577	1	63503	+		8992	22528	7352	7362	9964	9964					0.026512319748235313
EPITVERRLP	10	Unmodified	_EPITVERRLP_					0	0	0			REV__ENST00000373691.4_2_X:70837455-70837539:-|nuORF	REV__ENST00000373691.4_2_X:70837455-70837539:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	605.8218383789062	2	605.351137	1208.68772	1.8388	0.0011131	3.8761	0.0023464	5.715	0.0034596	605.3516440208846	92.294	0.72029	92.294	91.794	92.515	0					30	16	3	0	0	0	0.026802	1	9928	9928		42.396	0	1	334450	+		8993	25048	7353	7363	9965	9965					0.09172463834465816
EPIYNSQPE	9	Unmodified	_EPIYNSQPE_					0	0	0			REV__nc|ENSG00000175387|Q15796-2|SMAD2	REV__nc|ENSG00000175387|Q15796-2|SMAD2	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.8267211914062	2	538.748379	1075.4822	-0.44755	-0.00024112	-3.86	-0.0020796	-4.3075	-0.0023207	538.7466176544888	92.703	0.27797	90.741	90.606	90.884	-1.9617					7	5	2	0	0	0	0.027402	1	5903	5903		47.657	0	1	24485	+		8994	21895	7354	7364	9966	9966					-0.05251734415628562
EPKASSQSPPN	11	Unmodified	_EPKASSQSPPN_					0	0	0		ENST00000587439.5_1_19:36110588-36110915:+|nuORF	ENST00000587439.5_1_19:36110588-36110915:+|nuORF	ENST00000587439.5_1_19:36110588-36110915:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	571.2818603515625	2	571.277835	1140.54112	2.2515	0.0012862	0.8936	0.00051049	3.1451	0.0017967	571.2781510432832	100.52	0.7431	100.52	100.24	100.98	0					36	17	3	0	0	0	0.61983	1	11143	11143		42.864	0.46813	1	2258700			8995	14063	7355	7365	9967	9967					-0.023532581212748482
EPKEPLIPA	9	Unmodified	_EPKEPLIPA_					0	0	0		ENSG00000135723|ENST00000258201|FHOD1	ENSG00000135723|ENST00000258201|FHOD1	ENSG00000135723|ENST00000258201|FHOD1	MULTI-MSMS	OvCa9_classI_Rep2	2	497.7886657714844	2	497.2844	992.554247	0.15829	7.8716E-05	3.7087	0.0018443	3.867	0.001923	497.28405322830514	110.85	1.776	110.71	110.24	112.01	-0.13961					103	35	5	0	0	0	0.42676	1	10476	10476		49.442	5.0644	1	448890			8996	4408	7356	7366	9968	9968					0.05767224728765541
EPKEQKVK	8	Unmodified	_EPKEQKVK_					0	0	0			REV__ENSG00000196456|ENST00000329630|ZNF775	REV__ENSG00000196456|ENST00000329630|ZNF775	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.3351745605469	2	493.287474	984.560395	0.36049	0.00017782	-1.1619	-0.00057315	-0.80141	-0.00039532	493.2866383601931	63.289	0.15732	63.289	63.219	63.376	0					6	3	2	0	0	0	0.028476	1	5690	5690		27.882	10.517	1	89826	+		8997	22829	7357	7367	9969	9969					0.06749742960289495
EPKEQKVK	8	Unmodified	_EPKEQKVK_					0	0	0			REV__ENSG00000196456|ENST00000329630|ZNF775	REV__ENSG00000196456|ENST00000329630|ZNF775	MULTI-MATCH	OvCa9_classI_Rep2	2		2	493.287474	984.560395	1.0887	0.00053703	-1.1971	-0.00059049	-0.10839	-5.3468E-05	493.2866249275044	66.376	0.84463	63.68	63.22	64.064	-2.6958	0.16686	-0.00027204	NaN	20.947	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95824	+		8998	22829	7357	7367							0.06749742960289495
EPKFHVPI	8	Unmodified	_EPKFHVPI_					0	0	0		tr|A0A553SP65|A0A553SP65_NIACIStk1familyPASTAdomain-containingSer/ThrkinaseOS=NialliacirculansOX=1397GN=pknBPE=4SV=1	tr|A0A553SP65|A0A553SP65_NIACIStk1familyPASTAdomain-containingSer/ThrkinaseOS=NialliacirculansOX=1397GN=pknBPE=4SV=1	tr|A0A553SP65|A0A553SP65_NIACIStk1familyPASTAdomain-containingSer/ThrkinaseOS=NialliacirculansOX=1397GN=pknBPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	484.3173828125	2	483.774003	965.533452	-0.48251	-0.00023343	-0.072272	-3.4963E-05	-0.55478	-0.00026839	483.77374589097116	115.27	0.83893	114.22	113.8	114.64	-1.055					19	16	2	0	0	0	0.028476	1	8599	8599		21.702	0	1	14470			8999	34007	7358	7368	9970	9970					0.04930679139749827
EPKFHVPID	9	Unmodified	_EPKFHVPID_					0	0	0		tr|A0A553SP65|A0A553SP65_NIACIStk1familyPASTAdomain-containingSer/ThrkinaseOS=NialliacirculansOX=1397GN=pknBPE=4SV=1	tr|A0A553SP65|A0A553SP65_NIACIStk1familyPASTAdomain-containingSer/ThrkinaseOS=NialliacirculansOX=1397GN=pknBPE=4SV=1	tr|A0A553SP65|A0A553SP65_NIACIStk1familyPASTAdomain-containingSer/ThrkinaseOS=NialliacirculansOX=1397GN=pknBPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.3028564453125	2	541.287474	1080.5604	-0.14638	-7.9234E-05	-4.1417	-0.0022418	-4.288	-0.0023211	541.2851274938697	66.54	0.45045	66.54	66.328	66.779	0					17	10	2	0	0	0	0.027455	1	6187	6187		51.335	12.529	1	601870			9000	34007	7359	7369	9971	9971					0.023337429602634074
EPKFKEPDP	9	Unmodified	_EPKFKEPDP_					0	0	0			REV__ENSG00000130649|ENST00000252945|CYP2E1	REV__ENSG00000130649|ENST00000252945|CYP2E1	MULTI-SECPEP	OvCa9_classI_Rep2	2	543.3473510742188	2	543.776939	1085.53933	-0.12449	-6.7694E-05	-3.1187	-0.0016959	-3.2432	-0.0017636	543.7750480618569	64.898	0.93666	62.174	61.705	62.641	-2.7245					26	17	2	0	0	0	0.027353	1	4921	4921		71.877	8.3436	1	27433	+		9001	18956	7360	7370	9972	9972					-2.2671392343909247E-05
EPKGWQISI	9	Unmodified	_EPKGWQISI_					0	0	0			REV__MER102a_dup1502|chrX:74266770-74267057:-|1.0689501722773544|0.3545922750322085|1.59|429.0|22|3|anti-sense	REV__MER102a_dup1502|chrX:74266770-74267057:-|1.0689501722773544|0.3545922750322085|1.59|429.0|22|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.810546875	2	529.287474	1056.5604	-0.080449	-4.2581E-05	0.22788	0.00012061	0.14743	7.8032E-05	529.2873082809656	105.26	0.44061	105.26	105	105.44	0					22	9	3	0	0	0	0.027462	1	11838	11838		54.722	0	1	639900	+		9002	28649	7361	7371	9973	9973					0.03437742960295509
EPKGWQISI	9	Unmodified	_EPKGWQISI_					0	0	0			REV__MER102a_dup1502|chrX:74266770-74267057:-|1.0689501722773544|0.3545922750322085|1.59|429.0|22|3|anti-sense	REV__MER102a_dup1502|chrX:74266770-74267057:-|1.0689501722773544|0.3545922750322085|1.59|429.0|22|3|anti-sense	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	529.287474	1056.5604	-2.5823	-0.0013668	1.0268	0.00054345	-1.5555	-0.00082331	529.2880283422999	107.3	0.84386	105.42	105.22	106.07	-1.8784	0.084706	0.00064522	NaN	72.879	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33335	+		9003	28649	7361	7371							0.03437742960295509
EPKLFLIL	8	Unmodified	_EPKLFLIL_					0	0	0			REV__ENST00000464132.1_1_1:150551076-150551247:-|nuORF	REV__ENST00000464132.1_1_1:150551076-150551247:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.30548095703125	2	486.810054	971.605554	-0.71328	-0.00034723	-4.4793	-0.0021806	-5.1926	-0.0025278	486.8080242809292	39.546	1.0051	39.546	39.242	40.247	0					42	22	4	0	0	0	0.028476	1	2374	2374		33.516	11.813	1	1590100	+		9004	26142	7362	7372	9974	9974					0.11861593493460987
EPKLLPCLH	9	Unmodified	_EPKLLPCLH_					0	0	0		nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33	nc|ENSG00000197323|Q9UPN9-2|TRIM33	nc|ENSG00000197323|Q9UPN9-2|TRIM33	MULTI-MSMS	OvCa9_classI_Rep2	2	525.2955322265625	2	525.294245	1048.57394	-0.7425	-0.00039003	3.2981	0.0017325	2.5556	0.0013424	525.2962332041591	48.014	1.342	45.304	44.885	46.228	-2.7097					84	26	5	0	0	0	0.42676	1	2953	2953		49.442	8.8689	1	278320			9005	8701	7363	7373	9975	9975					0.05159277467851098
EPKLPFNEGVI	11	Unmodified	_EPKLPFNEGVI_					0	0	0		ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	415.2132263183594	3	414.895806	1241.66559	-0.90379	-0.00037498	-0.34823	-0.00014448	-1.252	-0.00051946	415.22994650565676	43.799	1.7822	40.792	40.22	42.002	-3.0074					45	34	2	0	0	0	0.025772	1	2119	2119		33.039	2.4705	1	174650			9006	4415	7364	7374	9976	9976					0.05442239366038848
EPKMSAIIM	9	Oxidation (M)	_EPKMSAIIM(Oxidation (M))_		EPKMSAIIM(1)		EPKM(-46)SAIIM(46)	0	0	1			REV__tr|A0A553SGK3|A0A553SGK3_NIACI2-keto-3-deoxygluconatepermeaseOS=NialliacirculansOX=1397GN=kdgTPE=3SV=1	REV__tr|A0A553SGK3|A0A553SGK3_NIACI2-keto-3-deoxygluconatepermeaseOS=NialliacirculansOX=1397GN=kdgTPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	518.2623291015625	2	518.264296	1034.51404	1.0127	0.00052487	-4.2921	-0.0022245	-3.2794	-0.0016996	518.2618451712167	129.49	1.6325	128.38	127.94	129.57	-1.1121					68	32	4	0	0	0	0.38969	1	10259	10259		52.937	10.541	2	413920	+		9007	29711	7365	7375	9977	9977		653			-0.0018378125766957965
EPKPCKGNEY	10	Unmodified	_EPKPCKGNEY_					0	0	0		nc|ENSG00000131115|Q86WZ6-2|ZNF227;ENSG00000131115|ENST00000313040|ZNF227	nc|ENSG00000131115|Q86WZ6-2|ZNF227	nc|ENSG00000131115|Q86WZ6-2|ZNF227	MULTI-MSMS	OvCa99_classI_Rep5	1	583.2763061523438	2	582.771331	1163.52811	0.90506	0.00052744	1.5926	0.00092815	2.4977	0.0014556	582.7721536502288	144.67	1.4725	144.67	144.4	145.88	0					39	30	2	0	0	0	0.60504	1	16955	16955		41.427	5.8083	1	203780			9008	4045	7366	7376	9978	9978					-0.047114125050256916
EPKPQLPF	8	Unmodified	_EPKPQLPF_					0	0	0			REV__VWA5A|p.D540E|1|0.07|ENSG00000110002|chr11:124136669-124136669|T/G|missense_variant	REV__VWA5A|p.D540E|1|0.07|ENSG00000110002|chr11:124136669-124136669|T/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.8116149902344	2	478.26601	954.517468	0.51222	0.00024498	-4.3041	-0.0020585	-3.7919	-0.0018135	478.2634869422702	59.793	0.88482	56.401	56.051	56.936	-3.392					23	17	2	0	0	0	0.028476	1	4049	4049		16.473	0	1	61980	+		9009	32757	7367	7377	9979	9979					0.03838972902849491
EPKRLILN	8	Unmodified	_EPKRLILN_					0	0	0			REV__ENST00000264447.8_1_2:71650545-71650620:+|nuORF	REV__ENST00000264447.8_1_2:71650545-71650620:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	491.8055114746094	2	491.805834	981.597115	-0.58237	-0.00028641	0.39596	0.00019474	-0.18641	-9.1676E-05	491.8059066811213	50.582	1.7337	47.788	47.331	49.065	-2.794					87	34	4	0	0	0	0.65582	1	3258	3258		52.299	4.6418	1	434780	+		9010	24016	7368	7378	9980	9980					0.10558039576858391
EPKRVHLI	8	Unmodified	_EPKRVHLI_					0	0	0			REV__nc|ENSG00000065717|Q04725-2|TLE2	REV__nc|ENSG00000065717|Q04725-2|TLE2	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.3074035644531	2	496.306001	990.597449	1.0437	0.00051797	2.4021	0.0011922	3.4457	0.0017101	496.3075986664611	150.24	0.44971	150.24	149.94	150.39	0					15	8	3	0	0	0	0.028476	1	17585	17585		13.775	0	1	39232	+		9011	16803	7369	7379	9981	9981					0.10177459296698999
EPKSKKVM	8	Unmodified	_EPKSKKVM_					0	0	0			REV__nc|ENSG00000069275|Q9H1E3-2|NUCKS1	REV__nc|ENSG00000069275|Q9H1E3-2|NUCKS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.76800537109375	2	473.773145	945.531738	-0.087867	-4.1629E-05	2.7579	0.0013066	2.67	0.001265	473.7744970324215	35.684	0.23273	35.684	35.566	35.799	0					8	4	2	0	0	0	0.028476	1	1806	1806		54.776	24.273	1	221230	+		9012	16866	7370	7380	9982	9982					0.056793020595023336
EPKTKESHS	9	Unmodified	_EPKTKESHS_					0	0	0			REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	MULTI-SECPEP	OvCa9_classI_Rep3	3	522.2988891601562	2	521.76182	1041.50909	-0.84561	-0.00044121	3.5575	0.0018562	2.7119	0.0014149	521.7662031094995	100.85	0.30128	99.243	99.043	99.344	-1.6053					8	5	2	0	0	0	0.027462	1	6842	6842		29.17	15.033	1	11923	+		9013	18807	7371	7381	9983	9983					-0.010006258044313654
EPKVATAYRPP	11	Unmodified	_EPKVATAYRPP_					0	0	0		nc|ENSG00000144895|Q9BY44-4|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A	nc|ENSG00000144895|Q9BY44-4|EIF2A	nc|ENSG00000144895|Q9BY44-4|EIF2A	MULTI-MSMS	OvCa9_classI_Rep2	2	410.2271728515625	3	410.227667	1227.66117	-0.59157	-0.00024268	1.2075	0.00049536	0.61596	0.00025268	410.22807386978417	38.111	1.8292	35.402	35.124	36.953	-2.7097					84	36	4	0	0	0	0.71338	1	1781	1781		25.068	5.0373	1	218460			9014	5192	7372	7382	9984	9984					0.0564477494312996
EPKVVSITLE	10	Unmodified	_EPKVVSITLE_					0	0	0		tr|A0A553SK14|A0A553SK14_NIACIPhenylalanine--tRNAligasebetasubunitOS=NialliacirculansOX=1397GN=pheTPE=3SV=1	tr|A0A553SK14|A0A553SK14_NIACIPhenylalanine--tRNAligasebetasubunitOS=NialliacirculansOX=1397GN=pheTPE=3SV=1	tr|A0A553SK14|A0A553SK14_NIACIPhenylalanine--tRNAligasebetasubunitOS=NialliacirculansOX=1397GN=pheTPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.3070068359375	2	557.821347	1113.62814	0.016915	9.4354E-06	2.2948	0.0012801	2.3117	0.0012895	558.3238285920802	80.347	0.2978	77.636	77.417	77.714	-2.7106					8	5	2	0	0	0	0.027028	1	6539	6539		24.519	9.8551	1	7073.8			9015	33567	7373	7383	9985	9985					0.07587148100446939
EPLAFSKQL	9	Unmodified	_EPLAFSKQL_					0	0	0			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	MSMS	OvCa99_classI_Rep5	1	516.7922973632812	2	516.78985	1031.56515	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.378	1	50.378	49.878	50.878	0								0	0	0	0.16802	1	3822	3822		56.721	1.9447	1		+		9016	19163	7374	7384	9986	9986					0.05062627103052364
EPLAGRTWR	9	Unmodified	_EPLAGRTWR_					0	0	0		ENST00000529704.5_1_11:67119307-67120167:-|nuORF;ENST00000534515.1_1_11:67119307-67119526:-|nuORF	ENST00000529704.5_1_11:67119307-67120167:-|nuORF	ENST00000529704.5_1_11:67119307-67120167:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.2410278320312	2	543.296165	1084.57778	0.14727	8.0011E-05	-1.6997	-0.00092344	-1.5524	-0.00084343	543.2947382571989	46.318	0.5212	46.318	46.198	46.719	0					13	11	2	0	0	0	0.027462	1	3281	3281		21.96	0	1	181590			9017	13279	7375	7385	9987	9987					0.0388708328591747
EPLATTDK	8	Unmodified	_EPLATTDK_					0	0	0			REV__PGAM4|p.I160Tfs*14|1|0.04|ENSG00000226784|chrX:77969160-77969161|-/GGCAG|frameshift_variant	REV__PGAM4|p.I160Tfs*14|1|0.04|ENSG00000226784|chrX:77969160-77969161|-/GGCAG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	437.7328796386719	2	437.729458	873.444362	-0.70705	-0.0003095	1.5176	0.00066431	0.81058	0.00035482	437.7300688971663	53.797	2.049	50.549	49.955	52.004	-3.2474					70	39	3	0	0	0	0.57878	1	3303	3303		68.485	2.5872	1	324660	+		9018	29288	7376	7386	9988	9988					0.002577993895670261
EPLCPASRPIQ	11	Unmodified	_EPLCPASRPIQ_					0	0	0		SVA_D_dup912|chr11:73935626-73937666:-|1.861451030615439|0.3832838640500095|2.28|429.0|26|2|sense	SVA_D_dup912|chr11:73935626-73937666:-|1.861451030615439|0.3832838640500095|2.28|429.0|26|2|sense	SVA_D_dup912|chr11:73935626-73937666:-|1.861451030615439|0.3832838640500095|2.28|429.0|26|2|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	605.8152465820312	2	605.816073	1209.61759	0.98318	0.00059562	-1.5691	-0.00095061	-0.58596	-0.00035498	605.8149294907378	152.12	3.19	152.12	151.74	154.93	0					156	68	3	0	0	0	0.16138	1	17844	17844		85.161	2.4103	1	906760			9019	32932	7377	7387	9989	9989					0.021168421743368526
EPLEKGLRIL	10	Unmodified	_EPLEKGLRIL_					0	0	0		tr|A0A7D6ZZI6|A0A7D6ZZI6_9CLOTM18familyaminopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06230PE=3SV=1	tr|A0A7D6ZZI6|A0A7D6ZZI6_9CLOTM18familyaminopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06230PE=3SV=1	tr|A0A7D6ZZI6|A0A7D6ZZI6_9CLOTM18familyaminopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06230PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	584.356689453125	2	584.358431	1166.70231	-2.312	-0.0013511	-1.149	-0.00067141	-3.461	-0.0020225	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.86416	1	14566	14566		10.866	0	1	180810			9020	35961	7378	7388	9990	9990					0.1256253598260173
EPLEKKEV	8	Unmodified	_EPLEKKEV_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.2394714355469	2	486.274032	970.533512	-0.77147	-0.00037514	2.5423	0.0012363	1.7708	0.00086111	486.2744503018591	53.377	0.34444	53.377	53.131	53.475	0					11	7	2	0	0	0	0.028476	1	4220	4220		56.721	0	1	74935	+		9021	28942;32737	7379	7389	9991	9991					0.04706634349099659
EPLEPADLLW	10	Unmodified	_EPLEPADLLW_					0	0	0			REV__ENSG00000100319|ENST00000344318|ZMAT5	REV__ENSG00000100319|ENST00000344318|ZMAT5	MULTI-SECPEP	OvCa99_classI_Rep5	1	591.789794921875	2	591.805697	1181.59684	2.2428	0.0013273	-1.2227	-0.00072362	1.0201	0.00060369	592.3071570849175	77.105	0.1656	77.105	76.961	77.126	0					5	3	2	0	0	0	0.027056	1	7742	7742		20.947	0	1	148280	+		9022	17398	7380	7390	9992	9992					0.013305750663448634
EPLETWVVL	9	Unmodified	_EPLETWVVL_					0	0	0			REV__nc|ENSG00000135074|Q9H013|ADAM19	REV__nc|ENSG00000135074|Q9H013|ADAM19	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8095703125	2	543.297507	1084.58046	2.8064	0.0015247	-2.5983	-0.0014117	0.20808	0.00011305	543.295971557033	102.63	0.25819	102.63	102.5	102.76	0					10	5	2	0	0	0	0.027441	1	11437	11437		45.952	19.259	1	477900	+		9023	28866	7381	7391	9993	9993					0.04155493900248075
EPLFGTLR	8	Unmodified	_EPLFGTLR_					0	0	0		nc|ENSG00000169933|Q14CM0|FRMPD4;ENSG00000169933|ENST00000675598|FRMPD4	nc|ENSG00000169933|Q14CM0|FRMPD4	nc|ENSG00000169933|Q14CM0|FRMPD4	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.75396728515625	2	466.763635	931.512717	2.5693	0.0011993	0.066422	3.1004E-05	2.6357	0.0012303	466.76349599712427	75.977	0.47785	75.977	75.68	76.158	0					30	11	3	0	0	0	0.028476	1	7553	7553		27.882	3.3782	1	2036200			9024	7056	7382	7392	9994	9994					0.04422088760099996
EPLGRRNPL	9	Unmodified	_EPLGRRNPL_					0	0	0		nc|ENSG00000095970|Q9NZC2-3|TREM2	nc|ENSG00000095970|Q9NZC2-3|TREM2	nc|ENSG00000095970|Q9NZC2-3|TREM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.8466186523438	2	526.30399	1050.59343	2.5496	0.0013419	-3.1527	-0.0016593	-0.60304	-0.00031738	526.3023191631238	90.208	0.4482	90.208	89.933	90.382	0					18	10	2	0	0	0	0.027462	1	9637	9637		39.253	0	1	993740			9025	14920	7383	7393	9995	9995					0.07015369802979876
EPLILKESWKI	11	Unmodified	_EPLILKESWKI_					0	0	0			REV__tr|A0A7D6VSD7|A0A7D6VSD7_9CLOTPenicillin-bindingtranspeptidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08865PE=3SV=1	REV__tr|A0A7D6VSD7|A0A7D6VSD7_9CLOTPenicillin-bindingtranspeptidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08865PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	451.93304443359375	3	452.602622	1354.78604	1.1754	0.000532	-0.55224	-0.00024995	0.62318	0.00028205	452.6023427290133	99.797	0.84216	98.966	98.666	99.509	-0.83051					25	16	2	0	0	0	0.026174	1	9115	9115		17.167	0	1	37205	+		9026	31491	7384	7394	9996	9996					0.12283647359640781
EPLKRFLP	8	Unmodified	_EPLKRFLP_					0	0	0			REV__tr|A0A7D6VR52|A0A7D6VR52_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_17990PE=4SV=1	REV__tr|A0A7D6VR52|A0A7D6VR52_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_17990PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.7903137207031	2	500.302927	998.591301	0.93412	0.00046734	-3.0492	-0.0015255	-2.115	-0.0010582	501.30450258766126	154.42	0.34872	154.42	154.22	154.57	0					14	6	3	0	0	0	0.028476	1	18093	18093		12.959	1.4482	1	12014	+		9027	31386	7385	7395	9997	9997					0.09194941065175044
EPLLDPLVE	9	Unmodified	_EPLLDPLVE_					0	0	0			REV__ENST00000565278.1_1_16:72762644-72762974:+|nuORF	REV__ENST00000565278.1_1_16:72762644-72762974:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.2902221679688	2	512.78169	1023.54883	-1.2041	-0.00061743	-1.4768	-0.00075726	-2.6809	-0.0013747	512.7807073417641	44.69	1.4959	41.651	41.362	42.858	-3.0385					40	28	2	0	0	0	0.027462	1	2335	2335		37.159	20.686	1	225300	+		9028	27680	7386	7396	9998	9998					0.0379950114629537
EPLLFKNQI	9	Unmodified	_EPLLFKNQI_					0	0	0		tr|A0A7D6VNC9|A0A7D6VNC9_9CLOTRibonucleaseE/GOS=ClostridiumintestinaleOX=36845GN=HZF06_18405PE=4SV=1	tr|A0A7D6VNC9|A0A7D6VNC9_9CLOTRibonucleaseE/GOS=ClostridiumintestinaleOX=36845GN=HZF06_18405PE=4SV=1	tr|A0A7D6VNC9|A0A7D6VNC9_9CLOTRibonucleaseE/GOS=ClostridiumintestinaleOX=36845GN=HZF06_18405PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.7464599609375	2	551.318774	1100.623	0.25989	0.00014328	-0.49644	-0.0002737	-0.23655	-0.00013042	551.3184317658785	122.61	0.64444	121.25	120.96	121.6	-1.3666					23	12	2	0	0	0	0.027295	1	11590	11590		96.19	16.739	1	26026			9029	34693	7387	7397	9999	9999					0.07670889028463534
EPLLFKNQI	9	Unmodified	_EPLLFKNQI_					0	0	0		tr|A0A7D6VNC9|A0A7D6VNC9_9CLOTRibonucleaseE/GOS=ClostridiumintestinaleOX=36845GN=HZF06_18405PE=4SV=1	tr|A0A7D6VNC9|A0A7D6VNC9_9CLOTRibonucleaseE/GOS=ClostridiumintestinaleOX=36845GN=HZF06_18405PE=4SV=1	tr|A0A7D6VNC9|A0A7D6VNC9_9CLOTRibonucleaseE/GOS=ClostridiumintestinaleOX=36845GN=HZF06_18405PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	551.318774	1100.623	-0.12904	-7.1143E-05	0.32006	0.00017645	0.19101	0.00010531	551.318976622956	121.4	0.64288	121.2	120.95	121.59	-0.19718	-0.024155	0.0004187	NaN	96.19	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14793			9030	34693	7387	7397							0.07670889028463534
EPLLFKNQI	9	Unmodified	_EPLLFKNQI_					0	0	0		tr|A0A7D6VNC9|A0A7D6VNC9_9CLOTRibonucleaseE/GOS=ClostridiumintestinaleOX=36845GN=HZF06_18405PE=4SV=1	tr|A0A7D6VNC9|A0A7D6VNC9_9CLOTRibonucleaseE/GOS=ClostridiumintestinaleOX=36845GN=HZF06_18405PE=4SV=1	tr|A0A7D6VNC9|A0A7D6VNC9_9CLOTRibonucleaseE/GOS=ClostridiumintestinaleOX=36845GN=HZF06_18405PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	551.318774	1100.623	0.86421	0.00047646	-0.14678	-8.092E-05	0.71743	0.00039553	551.3186292320302	122.26	0.83917	121.23	120.95	121.79	-1.0286	0.003199	-9.605E-05	NaN	96.19	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25762			9031	34693	7387	7397							0.07670889028463534
EPLLLHLR	8	Unmodified	_EPLLLHLR_					0	0	0		ENST00000599420.5_1_19:17314011-17316785:+|nuORF	ENST00000599420.5_1_19:17314011-17316785:+|nuORF	ENST00000599420.5_1_19:17314011-17316785:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.8035583496094	2	495.808377	989.6022	1.309	0.00064901	-3.4421	-0.0017066	-2.1331	-0.0010576	495.80674533639706	147.54	1.119	147.54	147.11	148.23	0					32	22	2	0	0	0	0.028476	1	17289	17289		18.324	0	1	82639			9032	14211	7388	7398	10000	10000					0.10698343439457858
EPLLLILHS	9	Unmodified	_EPLLLILHS_					0	0	0			REV__ENST00000454748.7_1_19:49793382-49793970:-|nuORF	REV__ENST00000454748.7_1_19:49793382-49793970:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.8115844726562	2	517.815867	1033.61718	-0.65499	-0.00033916	-0.084405	-4.3706E-05	-0.73939	-0.00038287	517.815748539482	89.028	1.2357	86.425	86.085	87.321	-2.6027					45	24	2	0	0	0	0.027441	1	7633	7633		29.15	0	1	214280	+		9033	26009	7389	7399	10001	10001					0.10171790516801593
EPLLLRYR	8	Unmodified	_EPLLLRYR_					0	0	0			REV__ENST00000527357.5_1_11:801679-803120:-|nuORF	REV__ENST00000527357.5_1_11:801679-803120:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8159790039062	2	530.319109	1058.62366	0.028032	1.4866E-05	-4.2531	-0.0022555	-4.2251	-0.0022406	530.3168449999141	32.724	0.93093	32.724	32.602	33.533	0					54	18	5	0	0	0	0.028476	1	1512	1512		24.203	5.8783	1	1474300	+		9034	22016	7390	7400	10002	10002					0.09669728468179528
EPLLMENLN	9	Unmodified	_EPLLMENLN_					0	0	0		tr|A0A7D6ZVS4|A0A7D6ZVS4_9CLOTNucleartransportfactor2familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16090PE=4SV=1	tr|A0A7D6ZVS4|A0A7D6ZVS4_9CLOTNucleartransportfactor2familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16090PE=4SV=1	tr|A0A7D6ZVS4|A0A7D6ZVS4_9CLOTNucleartransportfactor2familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16090PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.8097534179688	2	536.7708	1071.52705	-0.43029	-0.00023097	2.5265	0.0013561	2.0962	0.0011252	536.7722754011104	53.916	0.65493	53.916	53.475	54.13	0					35	15	3	0	0	0	0.027462	1	4284	4284		35.618	8.9254	1	666090			9035	35814	7391	7401	10003	10003					-0.005856268739080406
EPLLMLLF	8	Unmodified	_EPLLMLLF_					0	0	0			REV__nc|ENSG00000151812|A4IF30-2|SLC35F4	REV__nc|ENSG00000151812|A4IF30-2|SLC35F4	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.2855224609375	2	488.282815	974.551076	-0.26209	-0.00012797	3.0373	0.0014831	2.7752	0.0013551	488.2841897132088	101.66	1.3309	99.393	99.066	100.4	-2.2665					71	25	4	0	0	0	0.60486	1	9122	9122		62.978	5.5258	1	466970	+		9036	20256	7392	7402	10004	10004					0.06278258350403121
EPLLTEMKMG	10	Oxidation (M)	_EPLLTEM(Oxidation (M))KMG_		EPLLTEM(0.5)KM(0.5)G		EPLLTEM(0)KM(0)G	0	0	1			REV__nc|ENSG00000140009|Q92731-2|ESR2	REV__nc|ENSG00000140009|Q92731-2|ESR2	MULTI-MSMS	OvCa9_classI_Rep2	2	582.7850952148438	2	582.785592	1163.55663	0.38439	0.00022402	-0.39025	-0.00022743	-0.0058608	-3.4156E-06	582.7852424232326	125.44	1.0402	125.2	124.91	125.95	-0.2359					45	20	3	0	0	0	0.37436	1	12241	12241		71.877	7.6702	2	124070	+		9037	28891	7393	7403	10005	10005		637;638			-0.018604309201009528
EPLLTEMKMG	10	Oxidation (M)	_EPLLTEMKM(Oxidation (M))G_		EPLLTEM(0.084)KM(0.916)G		EPLLTEM(-10)KM(10)G	0	0	1			REV__nc|ENSG00000140009|Q92731-2|ESR2	REV__nc|ENSG00000140009|Q92731-2|ESR2	MULTI-MSMS	OvCa9_classI_Rep3	3	582.7850341796875	2	582.785592	1163.55663	0.22375	0.0001304	-0.22904	-0.00013348	-0.0052902	-3.083E-06	582.7853446594718	126.06	1.3576	124.99	124.71	126.07	-1.0715					58	25	3	0	0	0	0.28845	1	9841	9841		82.241	18.033	2	148130	+		9038	28891	7393	7403	10006	10006		637;638			-0.018604309201009528
EPLLTEMKMG	10	Oxidation (M)	_EPLLTEMKM(Oxidation (M))G_		EPLLTEM(0.137)KM(0.863)G		EPLLTEM(-8)KM(8)G	0	0	1			REV__nc|ENSG00000140009|Q92731-2|ESR2	REV__nc|ENSG00000140009|Q92731-2|ESR2	MULTI-MSMS	OvCa9_classI_Rep4_	4	582.7849731445312	2	582.785592	1163.55663	-2.9728	-0.0017325	2.7909	0.0016265	-0.18196	-0.00010605	582.7870495217087	126.37	1.1831	124.96	124.68	125.86	-1.4143					57	23	3	0	0	0	0.28845	1	12029	12029		82.241	7.9855	2	169410	+		9039	28891	7393	7403	10007	10007		637;638			-0.018604309201009528
EPLPAWSHEV	10	Unmodified	_EPLPAWSHEV_					0	0	0		ENSG00000168792|ENST00000307201|ABHD15	ENSG00000168792|ENST00000307201|ABHD15	ENSG00000168792|ENST00000307201|ABHD15	MULTI-MSMS	OvCa9_classI_Rep3	3	582.7837524414062	2	582.787838	1163.56112	0.22375	0.0001304	-4.0827	-0.0023794	-3.859	-0.002249	582.7853446594718	126.06	1.3576	124.99	124.71	126.07	-1.0715					58	25	3	0	0	0	0.41408	2	9829	9829;9848		66.429	10.749	1	148130			9040	6942	7394	7404	10008;10009	10008					-0.014114623906834822
EPLPAWSHEV	10	Unmodified	_EPLPAWSHEV_					0	0	0		ENSG00000168792|ENST00000307201|ABHD15	ENSG00000168792|ENST00000307201|ABHD15	ENSG00000168792|ENST00000307201|ABHD15	MULTI-MSMS	OvCa9_classI_Rep4_	4	582.7857055664062	2	582.787838	1163.56112	-2.9728	-0.0017325	-1.0628	-0.00061939	-4.0356	-0.0023519	582.7870495217087	126.37	1.1831	124.96	124.68	125.86	-1.4143					57	23	3	0	0	0	0.49558	1	12018	12018		54.776	5.2403	1	169410			9041	6942	7394	7404	10010	10010					-0.014114623906834822
EPLPAYRPKP	10	Unmodified	_EPLPAYRPKP_					0	0	0			REV__ENSG00000183035|ENST00000329312|CYLC1	REV__ENSG00000183035|ENST00000329312|CYLC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.79931640625	2	584.329673	1166.64479	2.0069	0.0011727	0.94295	0.00055099	2.9499	0.0017237	584.3297228135118	100.43	1.458	100.43	99.777	101.23	0					59	34	3	0	0	0	0.026635	1	11207	11207		47.657	14.845	1	265710	+		9042	22337	7395	7405	10011	10011					0.06813693777030494
EPLPLPQIE	9	Unmodified	_EPLPLPQIE_					0	0	0		AWAT1|p.K289N|1|0.36|ENSG00000204195|chrX:70240170-70240170|G/T|missense_variant;ENSG00000204195|ENST00000374521|AWAT1	AWAT1|p.K289N|1|0.36|ENSG00000204195|chrX:70240170-70240170|G/T|missense_variant	AWAT1|p.K289N|1|0.36|ENSG00000204195|chrX:70240170-70240170|G/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.2893676757812	2	518.289682	1034.56481	0.20741	0.0001075	1.8987	0.00098407	2.1061	0.0010916	518.2900952725619	160.71	0.30476	160.71	160.45	160.76	0					7	5	2	0	0	0	0.027453	1	18816	18816		45.972	3.5761	1	24410			9043	138	7396	7406	10012	10012					0.04891207383184337
EPLPVGPRL	9	Unmodified	_EPLPVGPRL_					0	0	0			REV__chr16:2785646-2785799|320|125.99|0.22|9.19|-|ENST00000571674|PRSS33,PRSS33	REV__chr16:2785646-2785799|320|125.99|0.22|9.19|-|ENST00000571674|PRSS33,PRSS33	MULTI-SECPEP	OvCa9_classI_Rep4_	4	489.2309265136719	2	489.292559	976.570566	-0.61835	-0.00030255	1.0772	0.00052708	0.45888	0.00022453	489.29282075982235	106.41	0.77217	104.4	104.16	104.93	-2.0161					24	14	2	0	0	0	0.027462	1	9666	9666		44.117	12.162	1	68679	+		9044	15928	7397	7407	10013	10013					0.0813435068552053
EPLPVGPRL	9	Unmodified	_EPLPVGPRL_					0	0	0			REV__chr16:2785646-2785799|320|125.99|0.22|9.19|-|ENST00000571674|PRSS33,PRSS33	REV__chr16:2785646-2785799|320|125.99|0.22|9.19|-|ENST00000571674|PRSS33,PRSS33	MULTI-MATCH	OvCa9_classI_Rep2	2		2	489.292559	976.570566	-0.11469	-5.6116E-05	1.061	0.00051913	0.94629	0.00046301	489.292535605346	104.8	0.74038	104.22	104.02	104.76	-0.57639	-0.062512	0.00019995	NaN	35.618	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68478	+		9045	15928	7397	7407							0.0813435068552053
EPLRELGHEL	10	Unmodified	_EPLRELGHEL_					0	0	0			REV__LIG1|p.T614Ifs*112|1|0.04|ENSG00000105486|chr19:48128003-48128004|-/GGAGGCGGAGGTTGCAGTGAGCTGAGATC|frameshift_variant	REV__LIG1|p.T614Ifs*112|1|0.04|ENSG00000105486|chr19:48128003-48128004|-/GGAGGCGGAGGTTGCAGTGAGCTGAGATC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	596.8169555664062	2	596.81967	1191.62479	-1.5015	-0.00089611	-4.1369	-0.002469	-5.6384	-0.0033651	596.8171161474286	55.17	1.9389	52.356	51.772	53.711	-2.8139					100	38	4	0	0	0	0.6898	1	3835	3835		31.634	2.4642	1	332760	+		9046	17729	7398	7408	10014	10014					0.03663898046443137
EPLRIESVK	9	Unmodified	_EPLRIESVK_					0	0	0			REV__ENSG00000105227|ENST00000324001|PRX	REV__ENSG00000105227|ENST00000324001|PRX	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2964477539062	2	535.813856	1069.61316	1.996	0.0010695	2.2386	0.0011995	4.2346	0.002269	535.8155576669831	122.18	1.893	122.18	121.8	123.69	0					76	40	3	0	0	0	0.027433	1	14050	14050		74.255	12.148	1	226610	+		9047	17706	7399	7409	10015	10015					0.08113701023080466
EPLRIESVK	9	Unmodified	_EPLRIESVK_					0	0	0			REV__ENSG00000105227|ENST00000324001|PRX	REV__ENSG00000105227|ENST00000324001|PRX	MULTI-MATCH	OvCa9_classI_Rep3	3		2	535.813856	1069.61316	2.359	0.001264	-0.30953	-0.00016585	2.0495	0.0010981	535.8142006563784	123.23	0.52003	122.19	121.94	122.46	-1.0377	0.0043234	-0.001971	NaN	74.255	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15586	+		9048	17706	7399	7409							0.08113701023080466
EPLRLTLADP	10	Unmodified	_EPLRLTLADP_					0	0	0		chr19:57850561-57868458|185|11.97|0.2|5.91|-|2|ZNF814,ZNF814|1	chr19:57850561-57868458|185|11.97|0.2|5.91|-|2|ZNF814,ZNF814|1	chr19:57850561-57868458|185|11.97|0.2|5.91|-|2|ZNF814,ZNF814|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.7862548828125	2	562.819138	1123.62372	-0.18338	-0.00010321	3.5655	0.0020067	3.3821	0.0019035	562.8208131447946	107.25	0.57398	105.37	105.12	105.69	-1.8785					17	10	2	0	0	0	0.026826	1	9810	9810		29.17	0	1	33180			9049	424	7400	7410	10016	10016					0.06685683677528687
EPLRPAKIL	9	Unmodified	_EPLRPAKIL_					0	0	0		COBL|p.Q1239Rfs*58|1|0.05|ENSG00000106078|chr7:51025161-51025162|-/AAAATCTTTGCCGGGCGCAGTGGCTCAC|frameshift_variant	COBL|p.Q1239Rfs*58|1|0.05|ENSG00000106078|chr7:51025161-51025162|-/AAAATCTTTGCCGGGCGCAGTGGCTCAC|frameshift_variant	COBL|p.Q1239Rfs*58|1|0.05|ENSG00000106078|chr7:51025161-51025162|-/AAAATCTTTGCCGGGCGCAGTGGCTCAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	518.8287963867188	2	518.829309	1035.64407	-0.53777	-0.00027901	0.10892	5.6512E-05	-0.42884	-0.0002225	518.8292895658562	121.25	2.223	121.05	120.51	122.73	-0.19719					126	44	4	0	0	0	0.33652	3	11709	11709;11721;11753		58.782	12.81	1	627930			9050	592	7401	7411	10017;10018;10019	10017					0.12766899127996112
EPLRPAKIL	9	Unmodified	_EPLRPAKIL_					0	0	0		COBL|p.Q1239Rfs*58|1|0.05|ENSG00000106078|chr7:51025161-51025162|-/AAAATCTTTGCCGGGCGCAGTGGCTCAC|frameshift_variant	COBL|p.Q1239Rfs*58|1|0.05|ENSG00000106078|chr7:51025161-51025162|-/AAAATCTTTGCCGGGCGCAGTGGCTCAC|frameshift_variant	COBL|p.Q1239Rfs*58|1|0.05|ENSG00000106078|chr7:51025161-51025162|-/AAAATCTTTGCCGGGCGCAGTGGCTCAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	518.8286743164062	2	518.829309	1035.64407	1.7024	0.00088324	-2.0698	-0.0010739	-0.36745	-0.00019064	518.8281964515016	122.5	2.5536	121.47	120.64	123.19	-1.0286					133	48	4	0	0	0	0.31747	2	9448	9402;9448		60.972	7.6205	1	994930			9051	592	7401	7411	10020;10021	10021					0.12766899127996112
EPLRPGKK	8	Unmodified	_EPLRPGKK_					0	0	0			REV__ENSG00000188112|ENST00000341865|C6orf132	REV__ENSG00000188112|ENST00000341865|C6orf132	MULTI-SECPEP	OvCa9_classI_Rep2	2	462.323974609375	2	462.784902	923.55525	0.33467	0.00015488	-0.3069	-0.00014203	0.027767	1.285E-05	462.78460686887274	81.787	1.0368	80.139	79.767	80.804	-1.6485					40	19	3	0	0	0	0.028476	1	6918	6918		49.442	15.949	1	100840	+		9052	22691	7402	7412	10022	10022					0.09041483888336188
EPLSDDAKI	9	Unmodified	_EPLSDDAKI_					0	0	0			REV__tr|A0A553SL36|A0A553SL36_NIACIRNApolymerasesigmafactorSigXOS=NialliacirculansOX=1397GN=sigXPE=3SV=1	REV__tr|A0A553SL36|A0A553SL36_NIACIRNApolymerasesigmafactorSigXOS=NialliacirculansOX=1397GN=sigXPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.7859191894531	2	494.253297	986.492041	-0.81919	-0.00040489	-0.96066	-0.00047481	-1.7798	-0.00087969	494.25243550862	42.057	0.55501	39.077	38.906	39.461	-2.9804					14	10	2	0	0	0	0.027295	1	1946	1946		96.19	34.083	1	13734	+		9053	30181	7403	7413	10023	10023					-0.0017454641023277873
EPLSIYEMSAP	11	Unmodified	_EPLSIYEMSAP_					0	0	0		ENST00000371753.5_1_9:138900198-138900429:-|nuORF	ENST00000371753.5_1_9:138900198-138900429:-|nuORF	ENST00000371753.5_1_9:138900198-138900429:-|nuORF	MSMS	OvCa99_classI_Rep5	1	618.795654296875	2	618.794472	1235.57439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	157.09	1	157.09	156.59	157.59	0								0	0	0	0.087163	1	18409	18409		69.628	10.846	1				9054	10964	7404	7414	10024	10024					-0.033973923935946004
EPLSIYEMSAP	11	Unmodified	_EPLSIYEMSAP_					0	0	0		ENST00000371753.5_1_9:138900198-138900429:-|nuORF	ENST00000371753.5_1_9:138900198-138900429:-|nuORF	ENST00000371753.5_1_9:138900198-138900429:-|nuORF	MSMS	OvCa99_classI_Rep5	1	618.7963256835938	2	618.794472	1235.57439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	157.3	1	157.3	156.8	157.8	0								0	0	0	0.19125	1	18435	18435		45.972	1.5951	1				9055	10964	7404	7414	10025	10025					-0.033973923935946004
EPLSLPPLI	9	Unmodified	_EPLSLPPLI_					0	0	0			REV__FLAM_C_dup760|chr1:48196212-48196347:-|1.4398178951236371|0.107020745204949|3.75|427.0|9|2|anti-sense	REV__FLAM_C_dup760|chr1:48196212-48196347:-|1.4398178951236371|0.107020745204949|3.75|427.0|9|2|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	489.7999267578125	2	489.797143	977.579734	0.35762	0.00017516	4.1576	0.0020364	4.5152	0.0022115	489.79900077673824	160.64	3.1469	160.64	159.38	162.53	0					149	62	3	0	0	0	0.6653	1	18752	18752		24.203	1.1603	1	288360	+		9056	28138	7405	7415	10026	10026					0.09004699251204329
EPLTTIFH	8	Unmodified	_EPLTTIFH_					0	0	0		nc|ENSG00000138759|Q86XX4-5|FRAS1	nc|ENSG00000138759|Q86XX4-5|FRAS1	nc|ENSG00000138759|Q86XX4-5|FRAS1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.8120422363281	2	479.255643	956.496732	0.44628	0.00021388	0.79559	0.00038129	1.2419	0.00059517	479.2540684562294	60.085	0.88428	56.655	56.259	57.144	-3.43					29	17	3	0	0	0	0.028476	1	4035	4035		26.796	1.3459	1	50749			9057	15048	7406	7416	10027	10027					0.016743825231856135
EPLVFPVPS	9	Unmodified	_EPLVFPVPS_					0	0	0			REV__nc|ENSG00000184459|Q8NFQ6-2|BPIFC	REV__nc|ENSG00000184459|Q8NFQ6-2|BPIFC	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3055725097656	2	492.773668	983.532783	0.17472	8.6096E-05	-0.67533	-0.00033279	-0.50062	-0.00024669	492.7732675990454	105.97	0.62699	104.62	104.4	105.03	-1.3482					20	11	2	0	0	0	0.027462	1	7495	7495		21.96	1.4781	1	74772	+		9058	22430	7407	7417	10028	10028					0.040358397000545665
EPMALLFPLV	10	Unmodified	_EPMALLFPLV_					0	0	0			REV__ENST00000570164.5_1_16:31500917-31501493:-|nuORF	REV__ENST00000570164.5_1_16:31500917-31501493:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.3392944335938	2	565.319928	1128.6253	2.4385	0.0013785	2.8617	0.0016178	5.3001	0.0029963	565.322029049101	85.03	0.53412	85.03	84.8	85.334	0					22	12	3	0	0	0	0.026822	1	8899	8899		30.504	0	1	334730	+		9059	27736	7408	7418	10029	10029					0.06613601441904393
EPMKLVLKAG	10	Unmodified	_EPMKLVLKAG_					0	0	0		ENSG00000167971|ENST00000343516|CASKIN1	ENSG00000167971|ENST00000343516|CASKIN1	ENSG00000167971|ENST00000343516|CASKIN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7970581054688	2	543.323002	1084.63145	-0.08084	-4.3922E-05	-3.0872	-0.0016774	-3.1681	-0.0017213	543.3202815766995	69.152	0.20854	69.152	69.019	69.228	0					6	4	2	0	0	0	0.02676	1	6571	6571		58.23	15.834	1	91647			9060	6853	7409	7419	10030	10030					0.09252119673442394
EPMKLVLKAG	10	Unmodified	_EPMKLVLKAG_					0	0	0		ENSG00000167971|ENST00000343516|CASKIN1	ENSG00000167971|ENST00000343516|CASKIN1	ENSG00000167971|ENST00000343516|CASKIN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	543.323002	1084.63145	-0.11177	-6.0726E-05	2.6783	0.0014552	2.5665	0.0013944	543.3244587041536	71.966	1.3074	69.459	69.016	70.323	-2.5071	0.10461	0.0003194	NaN	58.23	66	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	300600			9061	6853	7409	7419							0.09252119673442394
EPMRISAPG	9	Unmodified	_EPMRISAPG_					0	0	0			REV__ENST00000345990.8_2_5:122847871-122847937:+|nuORF	REV__ENST00000345990.8_2_5:122847871-122847937:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.3057556152344	2	479.244752	956.474951	-0.73904	-0.00035418	0.31759	0.0001522	-0.42145	-0.00020198	479.24480706761403	41.081	0.778	38.127	37.945	38.723	-2.9541					20	14	2	0	0	0	0.027455	1	1796	1796		42.396	5.237	1	70104	+		9062	24696	7410	7420	10031	10031					-0.005027454970218059
EPNDLLGVETL	11	Unmodified	_EPNDLLGVETL_					0	0	0			REV__nc|ENSG00000167196|Q8NEZ5-3|FBXO22	REV__nc|ENSG00000167196|Q8NEZ5-3|FBXO22	MULTI-MSMS	OvCa9_classI_Rep3	3	600.3145751953125	2	600.311343	1198.60813	1.0965	0.00065822	2.6585	0.0015959	3.755	0.0022542	600.3130364211771	100.96	4.107	99.359	98.898	103	-1.6053					207	78	6	0	0	0	0.52474	1	6870	6870		51.528	12.722	1	611030	+		9063	21261	7411	7421	10032	10032					0.0167735236984754
EPNDLLGVETL	11	Unmodified	_EPNDLLGVETL_					0	0	0			REV__nc|ENSG00000167196|Q8NEZ5-3|FBXO22	REV__nc|ENSG00000167196|Q8NEZ5-3|FBXO22	MULTI-MSMS	OvCa9_classI_Rep4_	4	600.3147583007812	2	600.311343	1198.60813	0.10657	6.3974E-05	3.1756	0.0019064	3.2822	0.0019703	600.3133222024811	101.55	3.5557	99.284	98.883	102.44	-2.2665					163	68	6	0	0	0	0.41656	1	9156	9156		59.931	12.273	1	611890	+		9064	21261	7411	7421	10033	10033					0.0167735236984754
EPNETTSSLV	10	Unmodified	_EPNETTSSLV_					0	0	0			REV__ENST00000401547.6_2_11:67933383-67933455:-|nuORF	REV__ENST00000401547.6_2_11:67933383-67933455:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.7678833007812	2	538.758943	1075.50333	2.6523	0.001429	-2.479	-0.0013356	0.17334	9.3388E-05	538.7573978346401	94.166	0.76657	94.166	93.923	94.69	0					38	17	3	0	0	0	0.026891	1	10218	10218		12.812	0	1	2260400	+		9065	25411	7412	7422	10034	10034					-0.03139769106746826
EPNIIEDDE	9	Unmodified	_EPNIIEDDE_					0	0	0			REV__nc|ENSG00000117751|Q12972-2|PPP1R8	REV__nc|ENSG00000117751|Q12972-2|PPP1R8	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2904663085938	2	537.235301	1072.45605	1.1225	0.00060304	0.32275	0.00017339	1.4452	0.00077643	537.2352971887622	102.06	0.4738	102.06	101.78	102.25	0					13	10	2	0	0	0	0.027455	1	11353	11353		34.173	0	1	129150	+		9066	18368	7413	7423	10035	10035					-0.07728048377771302
EPNLPIKVE	9	Unmodified	_EPNLPIKVE_					0	0	0		tr|A0A553SG70|A0A553SG70_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_10340PE=3SV=1	tr|A0A553SG70|A0A553SG70_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_10340PE=3SV=1	tr|A0A553SG70|A0A553SG70_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_10340PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.8423461914062	2	519.795132	1037.57571	-0.93227	-0.00048459	2.8951	0.0015049	1.9628	0.0010203	519.7975725980049	101.59	0.39514	100.82	100.62	101.01	-0.76401					10	7	2	0	0	0	0.027411	1	9327	9327		80.455	12.961	1	7339.6			9067	33125	7414	7424	10036	10036					0.05842609757473838
EPNPVEEIFT	10	Unmodified	_EPNPVEEIFT_					0	0	0		nc|ENSG00000060718|P12107-3|COL11A1;ENSG00000060718|ENST00000370096|COL11A1;nc|ENSG00000060718|P12107-2|COL11A1	nc|ENSG00000060718|P12107-3|COL11A1	nc|ENSG00000060718|P12107-3|COL11A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.3021240234375	2	587.784961	1173.55537	1.339	0.00078707	1.2941	0.00076063	2.6331	0.0015477	587.7857129626303	130.64	0.62204	130.64	130.39	131.01	0					25	12	3	0	0	0	0.026994	1	15202	15202		19.104	0	1	210360			9068	1265	7415	7425	10037	10037					-0.02446605693012316
EPNQFGRSAQP	11	Unmodified	_EPNQFGRSAQP_					0	0	0			REV__nc|ENSG00000241350|Q13670|PMS2P11	REV__nc|ENSG00000241350|Q13670|PMS2P11	MULTI-SECPEP	OvCa99_classI_Rep5	1	616.3328247070312	2	615.796726	1229.5789	1.1097	0.00068336	4.34	0.0026725	5.4497	0.0033559	615.799178917827	105.75	1.4029	105.75	105.09	106.49	0					75	31	4	0	0	0	0.025277	1	11903	11903		47.96	0	1	1918200	+		9069	29158	7416	7426	10038	10038					-0.026707471358122348
EPNRDFADKI	10	Unmodified	_EPNRDFADKI_					0	0	0			REV__nc|ENSG00000142657|P52209-2|PGD	REV__nc|ENSG00000142657|P52209-2|PGD	MULTI-SECPEP	OvCa9_classI_Rep2	2	602.826171875	2	602.801477	1203.5884	-1.577	-0.00095061	4.2554	0.0025652	2.6785	0.0016146	602.8038897436486	67.923	1.3335	65.262	64.693	66.027	-2.661					62	26	3	0	0	0	0.026694	1	5419	5419		32.751	0	1	111520	+		9070	19799	7417	7427	10039	10039					-0.005249788503078889
EPNSLVRYN	9	Unmodified	_EPNSLVRYN_					0	0	0			REV__ENST00000575282.5_1_17:78185753-78186503:-|nuORF	REV__ENST00000575282.5_1_17:78185753-78186503:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.2769775390625	2	546.277638	1090.54072	-0.69095	-0.00037745	-0.28508	-0.00015573	-0.97603	-0.00053318	546.2773590007274	127.91	1.6271	126.47	126.19	127.81	-1.4357					62	31	4	0	0	0	0.48047	1	12211	12211		44.377	3.599	1	153590	+		9071	27773	7418	7428	10040	10040					-0.0009263305048534676
EPNVQIFAY	9	Unmodified	_EPNVQIFAY_					0	0	0			REV__tr|A0A553SH92|A0A553SH92_NIACIProteintranslocasesubunitSecYOS=NialliacirculansOX=1397GN=secYPE=3SV=1	REV__tr|A0A553SH92|A0A553SH92_NIACIProteintranslocasesubunitSecYOS=NialliacirculansOX=1397GN=secYPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.812255859375	2	540.771657	1079.52876	-0.68025	-0.00036786	2.8154	0.0015225	2.1352	0.0011546	541.2744084637005	76.007	0.90403	73.068	72.741	73.645	-2.9389					36	18	3	0	0	0	0.027462	1	5993	5993		27.882	7.8855	1	60847	+		9072	29784	7419	7429	10041	10041					-0.007822497936558648
EPNYITGKIKE	11	Unmodified	_EPNYITGKIKE_					0	0	0			REV__tr|A0A7D6ZRV7|A0A7D6ZRV7_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13650PE=4SV=1	REV__tr|A0A7D6ZRV7|A0A7D6ZRV7_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13650PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	431.2334899902344	3	431.234599	1290.68197	-0.65762	-0.00028359	-1.634	-0.00070463	-2.2916	-0.00098822	431.23389730645385	39.936	1.5833	37.227	36.953	38.536	-2.7097					108	31	5	0	0	0	0.68391	1	2015	2015		35.178	5.6275	1	918010	+		9073	32168	7420	7430	10042	10042					0.048253205321543646
EPNYITGKIKE	11	Unmodified	_EPNYITGKIKE_					0	0	0			REV__tr|A0A7D6ZRV7|A0A7D6ZRV7_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13650PE=4SV=1	REV__tr|A0A7D6ZRV7|A0A7D6ZRV7_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13650PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	431.2335510253906	3	431.234599	1290.68197	0.32719	0.00014109	-2.6967	-0.0011629	-2.3696	-0.0010218	431.23348895655243	40.197	2.2301	37.243	36.963	39.193	-2.9541					131	42	5	0	0	0	0.51772	2	1736	1699;1736		52.167	7.5277	1	2708400	+		9074	32168	7420	7430	10043;10044	10044					0.048253205321543646
EPNYNYVIQ	9	Unmodified	_EPNYNYVIQ_					0	0	0			REV__nc|ENSG00000107290|Q7Z333-3|SETX	REV__nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-SECPEP	OvCa9_classI_Rep3	3	571.2695922851562	2	570.272021	1138.52949	1.106	0.00063071	0.21381	0.00012193	1.3198	0.00075265	570.7739264806955	123.96	0.257	122.92	122.77	123.03	-1.0377					7	4	2	0	0	0	0.027462	1	9584	9584		34.173	11.593	1	11546	+		9075	17841	7421	7431	10045	10045					-0.03423455144616128
EPPADQHLLQ	10	Unmodified	_EPPADQHLLQ_					0	0	0			REV__ENST00000355508.3_1_7:2966407-2969665:-|nuORF	REV__ENST00000355508.3_1_7:2966407-2969665:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	574.2901000976562	2	574.290745	1146.56694	2.2976	0.0013195	-3.2518	-0.0018675	-0.95422	-0.000548	574.2887813624243	26.093	0.82673	23.383	23.246	24.073	-2.7097					33	20	3	0	0	0	0.73378	1	325	325		26.693	0	1	76649	+		9076	24749	7422	7432	10046	10046					-0.00048363879000135057
EPPAVSLLQ	9	Unmodified	_EPPAVSLLQ_					0	0	0		ENSG00000168005|ENST00000294244|SPINDOC	ENSG00000168005|ENST00000294244|SPINDOC	ENSG00000168005|ENST00000294244|SPINDOC	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.2655334472656	2	477.26875	952.522947	-2.0118	-0.00096017	-4.256	-0.0020313	-6.2678	-0.0029914	477.2667576254704	126.27	1.4228	124.85	124.24	125.66	-1.4143					44	28	2	0	0	0	0.29717	1	12032	12032		63.306	2.3343	1	86639			9077	6862	7423	7433	10047	10047					0.04478651694671498
EPPGGNGAL	9	Unmodified	_EPPGGNGAL_					0	0	0			REV__ENST00000468312.1_1_17:40370167-40384145:-|nuORF	REV__ENST00000468312.1_1_17:40370167-40384145:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	406.2020263671875	2	406.200867	810.387182	-0.71092	-0.00028878	0.54113	0.00021981	-0.16978	-6.8967E-05	406.20098492434767	49.367	2.4314	46.225	45.623	48.054	-3.1416					108	46	4	0	0	0	0.19716	1	2793	2793		76.847	10.949	1	1031500	+		9078	18788	7424	7434	10048	10048					-0.025596230961355104
EPPGGNGAL	9	Unmodified	_EPPGGNGAL_					0	0	0			REV__ENST00000468312.1_1_17:40370167-40384145:-|nuORF	REV__ENST00000468312.1_1_17:40370167-40384145:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	406.200867	810.387182	0.36954	0.00015011	0.208	8.449E-05	0.57754	0.0002346	406.20084894364106	49.243	1.5356	46.482	45.979	47.514	-2.7603	0.12868	-9.6409E-05	NaN	76.847	59	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168360	+		9079	18788	7424	7434							-0.025596230961355104
EPPGSDGAPIS	11	Unmodified	_EPPGSDGAPIS_					0	0	0			REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|68|2|sense	REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|68|2|sense	MSMS	OvCa99_classI_Rep5	1	513.7435913085938	2	513.740554	1025.46655	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.65	1	126.65	126.15	127.15	0								0	0	0	0.16975	1	14648	14648		51.193	3.2771	1		+		9080	28216	7425	7435	10049	10049					-0.04516020932669562
EPPHLAPLSD	10	Unmodified	_EPPHLAPLSD_					0	0	0		ENSG00000140548|ENST00000268154|ZNF710	ENSG00000140548|ENST00000268154|ZNF710	ENSG00000140548|ENST00000268154|ZNF710	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.3019409179688	2	538.274564	1074.53457	-1.0953	-0.00058957	0.18343	9.8738E-05	-0.91186	-0.00049083	538.2745688922611	56.088	0.40298	52.794	52.617	53.02	-3.2944					12	7	2	0	0	0	0.026994	1	3585	3585		19.104	0	1	25911			9081	4858	7426	7436	10050	10050					0.0002884871798869426
EPPHLAPLSD	10	Unmodified	_EPPHLAPLSD_					0	0	0		ENSG00000140548|ENST00000268154|ZNF710	ENSG00000140548|ENST00000268154|ZNF710	ENSG00000140548|ENST00000268154|ZNF710	MULTI-MATCH	OvCa99_classI_Rep5	1		2	538.274564	1074.53457	0.19864	0.00010692	-3.7078	-0.0019958	-3.5091	-0.0018889	538.2723982062124	52.697	0.4781	52.697	52.478	52.956	0	-0.047111	-0.00094587	NaN	30.318	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	697090			9082	4858	7426	7436							0.0002884871798869426
EPPHLAPLSD	10	Unmodified	_EPPHLAPLSD_					0	0	0		ENSG00000140548|ENST00000268154|ZNF710	ENSG00000140548|ENST00000268154|ZNF710	ENSG00000140548|ENST00000268154|ZNF710	MULTI-MATCH	OvCa9_classI_Rep2	2		2	538.274564	1074.53457	-1.7159	-0.00092362	0.18346	9.875E-05	-1.5324	-0.00082487	538.2754743131192	55.546	0.44552	52.742	52.582	53.027	-2.804	-0.0025151	0.0032432	NaN	30.318	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7346.1			9083	4858	7426	7436							0.0002884871798869426
EPPHPQGRPGR	11	Unmodified	_EPPHPQGRPGR_					0	0	0		ENST00000304031.7_1_2:20818438-20818750:-|nuORF	ENST00000304031.7_1_2:20818438-20818750:-|nuORF	ENST00000304031.7_1_2:20818438-20818750:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	409.5863342285156	3	409.882894	1226.62685	0.058821	2.411E-05	-3.959	-0.0016227	-3.9002	-0.0015986	410.2157599790058	34.372	0.65985	34.372	34.065	34.725	0					32	13	4	0	0	0	0.025271	1	1652	1652		32.034	0	1	95231			9084	10220	7427	7437	10051	10051					0.022603715748800823
EPPIINLQP	9	Unmodified	_EPPIINLQP_					0	0	0		ENSG00000184459|ENST00000300399|BPIFC	ENSG00000184459|ENST00000300399|BPIFC	ENSG00000184459|ENST00000300399|BPIFC	MULTI-SECPEP	OvCa9_classI_Rep2	2	511.31011962890625	2	510.78985	1019.56515	-0.58469	-0.00029865	0.41392	0.00021143	-0.17076	-8.7225E-05	510.78988734158594	74.637	1.0397	72.665	72.167	73.206	-1.9711					35	19	2	0	0	0	0.027455	1	6061	6061		60.972	31.822	1	58155			9085	8160	7428	7438	10052	10052					0.056146271030456774
EPPILKVR	8	Unmodified	_EPPILKVR_					0	0	0			REV__tr|A0A7D6ZWZ4|A0A7D6ZWZ4_9CLOTClassISAM-dependentmethyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09790PE=4SV=1	REV__tr|A0A7D6ZWZ4|A0A7D6ZWZ4_9CLOTClassISAM-dependentmethyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09790PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.2735595703125	2	476.302927	950.591301	-0.14129	-6.7296E-05	0.43631	0.00020782	0.29503	0.00014052	476.30282440748687	78.511	1.3163	76.771	76.249	77.565	-1.7398					43	25	2	0	0	0	0.028476	1	6504	6504		25.45	8.977	1	26224	+		9086	32307	7429	7439	10053	10053					0.11402941065182404
EPPKAPAW	8	Unmodified	_EPPKAPAW_					0	0	0			REV__ENSG00000198832|ENST00000400299|SELENOM	REV__ENSG00000198832|ENST00000400299|SELENOM	MULTI-SECPEP	OvCa9_classI_Rep4_	4	447.7613525390625	2	448.237253	894.459953	-0.49227	-0.00022065	-3.2533	-0.0014583	-3.7456	-0.0016789	448.23572973744336	41.42	1.196	38.439	37.763	38.959	-2.9804					38	22	2	0	0	0	0.028476	1	1879	1879		29.842	7.8817	1	56705	+		9087	23072	7430	7440	10054	10054					0.008501306972675593
EPPKRGNGLYG	11	Unmodified	_EPPKRGNGLYG_					0	0	0			REV__ENSG00000133597|ENST00000072869|ADCK2	REV__ENSG00000133597|ENST00000072869|ADCK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	595.2892456054688	2	594.312012	1186.60947	1.2345	0.00073369	3.4077	0.0020253	4.6422	0.0027589	594.3142158584388	109.63	0.44483	109.63	109.41	109.86	0					14	9	2	0	0	0	0.02557	1	12430	12430		24.519	1.4767	1	596470	+		9088	19149	7431	7441	10055	10055					0.023630312492286976
EPPLSKPKN	9	Unmodified	_EPPLSKPKN_					0	0	0			REV__ENST00000505306.5_1_17:48166897-48167038:+|nuORF	REV__ENST00000505306.5_1_17:48166897-48167038:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	505.28802490234375	2	505.287474	1008.5604	2.2197	0.0011216	0.51704	0.00026125	2.7368	0.0013829	505.2872671804258	82.474	0.84526	82.474	82.02	82.865	0					55	19	4	0	0	0	0.35444	1	8546	8546		56.721	4.4219	1	2133200	+		9089	26875	7432	7442	10056	10056					0.056457429602687625
EPPPDDNSGWD	11	Unmodified	_EPPPDDNSGWD_					0	0	0		nc|ENSG00000185532|Q13976-3|PRKG1;ENST00000373975.2_1_10:53822369-54053657:+|nuORF;nc|ENSG00000185532|Q13976|PRKG1;ENSG00000185532|ENST00000373980|PRKG1	nc|ENSG00000185532|Q13976-3|PRKG1	nc|ENSG00000185532|Q13976-3|PRKG1	MULTI-MSMS	OvCa9_classI_Rep4_	4	614.7396240234375	2	614.741282	1227.46801	-1.3373	-0.0008221	-3.3468	-0.0020574	-4.6841	-0.0028795	614.739888567499	119.3	1.8196	117.96	117.63	119.45	-1.3444					101	34	5	0	0	0	0.71498	1	11255	11255		24.519	0.99649	1	912670			9090	8261	7433	7443	10057	10057					-0.1366243163456602
EPPPLENEV	9	Unmodified	_EPPPLENEV_					0	0	0			REV__nc|ENSG00000142166|P17181-2|IFNAR1	REV__nc|ENSG00000142166|P17181-2|IFNAR1	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.2551879882812	2	512.253297	1022.49204	-0.66625	-0.00034129	0.61007	0.00031251	-0.056178	-2.8777E-05	512.253528475125	87.1	2.3549	84.473	83.957	86.312	-2.6269					166	46	5	0	0	0	0.37135	1	7386	7386		54.776	4.7518	1	2034900	+		9091	19769	7434	7444	10058	10058					-0.018305464102354563
EPPPQLLDI	9	Unmodified	_EPPPQLLDI_					0	0	0		ENSG00000171467|ENST00000361428|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.255859375	2	511.281857	1020.54916	2.6801	0.0013703	-0.71165	-0.00036385	1.9685	0.0010064	511.28142454276485	86.536	0.86416	86.536	86.271	87.135	0					47	20	3	0	0	0	0.027411	1	9131	9131		54.776	0	1	1666200			9092	7198	7435	7445	10059	10059					0.03970920866152028
EPPPSLPTEL	10	Unmodified	_EPPPSLPTEL_					0	0	0			REV__ENSG00000167548|ENST00000301067|KMT2D	REV__ENSG00000167548|ENST00000301067|KMT2D	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.83056640625	2	540.284597	1078.55464	3.0094	0.0016259	-1.9237	-0.0010394	1.0857	0.00058658	540.2828161551519	88.055	0.83746	88.055	87.546	88.384	0					27	19	2	0	0	0	0.026462	1	9311	9311		56.721	0	1	230340	+		9093	21287	7436	7446	10060	10060					0.018505996579506245
EPPPSLSRA	9	Unmodified	_EPPPSLSRA_					0	0	0			REV__nc|ENSG00000103197|P49815-4|TSC2	REV__nc|ENSG00000103197|P49815-4|TSC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.7738342285156	2	477.256174	952.497795	0.50592	0.00024145	-0.2242	-0.000107	0.28172	0.00013445	477.2559143411572	56.656	0.96567	53.362	53.12	54.086	-3.2944					48	18	3	0	0	0	0.027295	1	3619	3619		74.255	0	1	553450	+		9094	17603	7437	7447	10061	10061					0.019645968920940504
EPPSDLVTEI	10	Unmodified	_EPPSDLVTEI_					0	0	0			REV__tr|A0A553SJD9|A0A553SJD9_NIACITranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_16520PE=4SV=1	REV__tr|A0A553SJD9|A0A553SJD9_NIACITranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_16520PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.8169555664062	2	550.279512	1098.54447	2.3017	0.0012666	4.3845	0.0024127	6.6862	0.0036793	550.2837132828482	89.145	0.15056	89.145	89.043	89.193	0					7	3	3	0	0	0	0.026688	1	9497	9497		58.782	41.417	1	193350	+		9095	29999	7438	7448	10062	10062					-0.0008600806727372401
EPPSDLVTEI	10	Unmodified	_EPPSDLVTEI_					0	0	0			REV__tr|A0A553SJD9|A0A553SJD9_NIACITranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_16520PE=4SV=1	REV__tr|A0A553SJD9|A0A553SJD9_NIACITranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_16520PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	550.279512	1098.54447	-1.1492	-0.00063235	8.8826	0.0048879	7.7334	0.0042556	550.2849624998864	90.85	0.25585	88.77	88.567	88.823	-2.0805	-0.18767	0.0023986	NaN	58.782	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8470.9	+		9096	29999	7438	7448							-0.0008600806727372401
EPPSRSSI	8	Unmodified	_EPPSRSSI_					0	0	0			REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26;REV__ZFYVE26-NEMF|1|fusion	REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-SECPEP	OvCa99_classI_Rep5	1	437.2752380371094	2	436.727249	871.439946	-0.26266	-0.00011471	-0.08975	-3.9196E-05	-0.35241	-0.00015391	436.7271515588399	65.746	0.24499	65.746	65.586	65.831	0					8	5	2	0	0	0	0.028476	1	6042	6042		45.952	21.749	1	183670	+		9097	16911;32770	7439	7449	10063	10063					-0.0009166503333517539
EPPSYTTEY	9	Unmodified	_EPPSYTTEY_					0	0	0			REV__ENST00000471919.1_1_6:116981518-116989864:-|nuORF	REV__ENST00000471919.1_1_6:116981518-116989864:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.8235473632812	2	543.734937	1085.45532	0.24068	0.00013087	1.6664	0.00090608	1.9071	0.0010369	544.2394773888818	110.67	0.6839	109.07	108.65	109.33	-1.6011					18	12	2	0	0	0	0.027462	1	10206	10206		21.96	3.6355	1	16371	+		9098	20355	7440	7450	10064	10064					-0.08398843026816394
EPPTPKPDGGI	11	Unmodified	_EPPTPKPDGGI_					0	0	0		ENSG00000283288|ENST00000637503|SMIM33	ENSG00000283288|ENST00000637503|SMIM33	ENSG00000283288|ENST00000637503|SMIM33	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.2779541015625	2	554.287671	1106.56079	-0.14317	-7.9355E-05	-0.42246	-0.00023417	-0.56563	-0.00031352	554.2873396525401	73.015	0.87699	73.015	72.915	73.792	0					35	21	2	0	0	0	0.025638	1	7130	7130		17.468	5.2613	1	1287800			9099	9612	7441	7451	10065	10065					0.011771178894605328
EPPTPKPDGGI	11	Unmodified	_EPPTPKPDGGI_					0	0	0		ENSG00000283288|ENST00000637503|SMIM33	ENSG00000283288|ENST00000637503|SMIM33	ENSG00000283288|ENST00000637503|SMIM33	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	554.287671	1106.56079	0.40823	0.00022627	-3.6392	-0.0020172	-3.231	-0.0017909	554.2873486688161	75.704	0.43858	72.765	72.449	72.888	-2.9389	-0.12498	-0.0033302	NaN	21.686	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23085			9100	9612	7441	7451							0.011771178894605328
EPQGSEPFFSI	11	Unmodified	_EPQGSEPFFSI_					0	0	0			REV__nc|ENSG00000243943|Q96ME7-2|ZNF512	REV__nc|ENSG00000243943|Q96ME7-2|ZNF512	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.2233581542969	3	413.196033	1236.56627	0.42022	0.00017363	4.1944	0.0017331	4.6146	0.0019067	413.1980569740139	38.741	0.26246	38.741	38.619	38.882	0					9	5	3	0	0	0	0.025806	1	2222	2222		27.644	5.0823	1	46362	+		9101	23471	7442	7452	10066	10066					-0.0425520331871212
EPQIKWTE	8	Unmodified	_EPQIKWTE_					0	0	0			REV__ENST00000342232.4_1_8:75149008-75149230:-|nuORF	REV__ENST00000342232.4_1_8:75149008-75149230:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.2866821289062	2	515.763832	1029.51311	-0.12075	-6.2277E-05	-2.9179	-0.001505	-3.0387	-0.0015672	515.7630258936734	57.137	1.2212	53.792	53.577	54.799	-3.3449					31	23	2	0	0	0	0.028476	1	3795	3795		44.117	3.5442	1	42513	+		9102	24645	7443	7453	10067	10067					-0.00046536310719602625
EPQKVANEPS	10	Unmodified	_EPQKVANEPS_					0	0	0		nc|ENSG00000135525|Q14244-5|MAP7;nc|ENSG00000135525|Q14244-3|MAP7;nc|ENSG00000135525|Q14244-2|MAP7;nc|ENSG00000135525|Q14244-6|MAP7;nc|ENSG00000135525|Q14244-4|MAP7;ENSG00000135525|ENST00000354570|MAP7;nc|ENSG00000135525|Q14244-7|MAP7	nc|ENSG00000135525|Q14244-5|MAP7	nc|ENSG00000135525|Q14244-5|MAP7	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7979736328125	2	549.774928	1097.5353	1.9886	0.0010933	-4.4685	-0.0024567	-2.4799	-0.0013634	549.772074832262	85.005	0.70261	85.005	84.55	85.252	0					24	16	2	0	0	0	0.027028	1	8862	8862		24.519	0	1	441170			9103	4386	7444	7454	10068	10068					-0.00956356632968891
EPQLEYSLW	9	Unmodified	_EPQLEYSLW_					0	0	0			REV__nc|ENSG00000204961|Q9Y5H5-2|PCDHA9	REV__nc|ENSG00000204961|Q9Y5H5-2|PCDHA9	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.2824096679688	2	582.782222	1163.54989	1.6889	0.00098425	-0.43024	-0.00025074	1.2586	0.00073351	582.7822224201857	77.557	0.3768	77.557	77.211	77.588	0					13	8	2	0	0	0	0.027455	1	7825	7825		42.396	1.618	1	598840	+		9104	23194	7445	7455	10069	10069					-0.025342844848182722
EPQLKEFAL	9	Unmodified	_EPQLKEFAL_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.80615234375	2	537.795132	1073.57571	-0.068732	-3.6964E-05	-3.8145	-0.0020514	-3.8832	-0.0020884	537.7929824586734	46.987	0.39948	46.987	46.809	47.208	0					16	8	3	0	0	0	0.027462	1	3380	3380		21.96	0	1	128170			9105	7405	7446	7456	10070	10070					0.04186609757448423
EPQNYAHTN	9	Unmodified	_EPQNYAHTN_					0	0	0			REV__ENSG00000152104|ENST00000366956|PTPN14	REV__ENSG00000152104|ENST00000366956|PTPN14	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.8230590820312	2	537.23597	1072.45739	-1.8825	-0.0010113	-4.228	-0.0022714	-6.1104	-0.0032827	537.23383329811	120.45	0.418	119.11	118.82	119.24	-1.3444					9	7	2	0	0	0	0.027433	1	11339	11339		37.812	0	1	7699.9	+		9106	20270	7447	7457	10071	10071					-0.07594369498315245
EPQPERLV	8	Unmodified	_EPQPERLV_					0	0	0		MOCS3|p.P45T|1|0.32|ENSG00000124217|chr20:50958975-50958975|C/A|missense_variant;MOCS3|p.G105Ffs*23|1|0.04|ENSG00000124217|chr20:50959154-50959155|-/TTTGGGAGGCCGAGGCAGGCGGATCACGA|frameshift_variant;MOCS3|p.A404Ffs*15|1|0.29|ENSG00000124217|chr20:50960050-50960051|-/ATTC|frameshift_variant;ENSG00000124217|ENST00000244051|MOCS3	MOCS3|p.P45T|1|0.32|ENSG00000124217|chr20:50958975-50958975|C/A|missense_variant	MOCS3|p.P45T|1|0.32|ENSG00000124217|chr20:50958975-50958975|C/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.31243896484375	2	484.263999	966.513445	2.1956	0.0010632	0.18926	9.165E-05	2.3848	0.0011549	484.26388345850296	78.436	0.44957	78.436	78.134	78.583	0					15	10	2	0	0	0	0.028476	1	7972	7972		47.916	3.7988	1	431780			9107	3636	7448	7458	10072	10072					0.02884883409149097
EPQPERLV	8	Unmodified	_EPQPERLV_					0	0	0		MOCS3|p.P45T|1|0.32|ENSG00000124217|chr20:50958975-50958975|C/A|missense_variant;MOCS3|p.G105Ffs*23|1|0.04|ENSG00000124217|chr20:50959154-50959155|-/TTTGGGAGGCCGAGGCAGGCGGATCACGA|frameshift_variant;MOCS3|p.A404Ffs*15|1|0.29|ENSG00000124217|chr20:50960050-50960051|-/ATTC|frameshift_variant;ENSG00000124217|ENST00000244051|MOCS3	MOCS3|p.P45T|1|0.32|ENSG00000124217|chr20:50958975-50958975|C/A|missense_variant	MOCS3|p.P45T|1|0.32|ENSG00000124217|chr20:50958975-50958975|C/A|missense_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	484.263999	966.513445	-0.47643	-0.00023072	0.74991	0.00036316	0.27348	0.00013244	484.264383824717	80.891	0.67142	78.568	78.182	78.854	-2.3226	0.011954	0.00019033	NaN	47.916	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79047			9108	3636	7448	7458							0.02884883409149097
EPQPERLV	8	Unmodified	_EPQPERLV_					0	0	0		MOCS3|p.P45T|1|0.32|ENSG00000124217|chr20:50958975-50958975|C/A|missense_variant;MOCS3|p.G105Ffs*23|1|0.04|ENSG00000124217|chr20:50959154-50959155|-/TTTGGGAGGCCGAGGCAGGCGGATCACGA|frameshift_variant;MOCS3|p.A404Ffs*15|1|0.29|ENSG00000124217|chr20:50960050-50960051|-/ATTC|frameshift_variant;ENSG00000124217|ENST00000244051|MOCS3	MOCS3|p.P45T|1|0.32|ENSG00000124217|chr20:50958975-50958975|C/A|missense_variant	MOCS3|p.P45T|1|0.32|ENSG00000124217|chr20:50958975-50958975|C/A|missense_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	484.263999	966.513445	-0.83452	-0.00040413	0.50027	0.00024226	-0.33425	-0.00016186	484.26407752951843	81.376	0.93237	78.665	78.101	79.033	-2.7106	0.10889	-5.1453E-05	NaN	47.916	23	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70262			9109	3636	7448	7458							0.02884883409149097
EPQSIDGII	9	Unmodified	_EPQSIDGII_					0	0	0		tr|A0A7D7A0Z0|A0A7D7A0Z0_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13245PE=4SV=1	tr|A0A7D7A0Z0|A0A7D7A0Z0_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13245PE=4SV=1	tr|A0A7D7A0Z0|A0A7D7A0Z0_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13245PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	486.25714111328125	2	486.25584	970.497126	-2.6158	-0.001272	0.59144	0.00028759	-2.0244	-0.00098437	486.25602499314135	103.92	0.7225	103.92	103.64	104.36	0					35	16	3	0	0	0	0.1944	1	11654	11654		77.318	2.801	1	1352200			9110	36014	7449	7459	10073	10073					0.01069757452387421
EPQSSPAHS	9	Unmodified	_EPQSSPAHS_					0	0	0		nc|ENSG00000140464|P29590-13|PML;nc|ENSG00000140464|P29590-3|PML;nc|ENSG00000140464|P29590-8|PML	nc|ENSG00000140464|P29590-13|PML	nc|ENSG00000140464|P29590-13|PML	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.2699890136719	2	470.211963	938.409374	2.7835	0.0013088	-0.94938	-0.00044641	1.8341	0.00086242	470.21140556018975	89.303	0.40343	89.303	89.153	89.556	0					12	9	2	0	0	0	0.027462	1	9551	9551		32.812	0	1	348650			9111	15055	7450	7460	10074	10074					-0.06229443418374103
EPQWINVL	8	Unmodified	_EPQWINVL_					0	0	0		ENST00000485778.1_1_1:161633004-161641486:+|nuORF;nc|ENSG00000244682|P31995-4|FCGR2C;ENST00000480308.5_1_1:161633004-161643868:+|nuORF;nc|ENSG00000244682|P31995-3|FCGR2C;nc|ENSG00000244682|P31995-2|FCGR2C;nc|ENSG00000072694|P31994-5|FCGR2B;nc|ENSG00000072694|P31994-2|FCGR2B;nc|ENSG00000072694|P31994-3|FCGR2B;nc|ENSG00000072694|P31994-4|FCGR2B;ENSG00000072694|ENST00000358671|FCGR2B;nc|ENSG00000244682|P31995|FCGR2C	ENST00000485778.1_1_1:161633004-161641486:+|nuORF	ENST00000485778.1_1_1:161633004-161641486:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.2923889160156	2	499.768917	997.523281	2.1231	0.001061	3.6536	0.001826	5.7767	0.002887	499.7705543108703	106.09	1.1463	106.09	105.66	106.81	0					58	25	4	0	0	0	0.028476	1	11965	11965		68.787	5.4806	1	2426500			9112	1478	7451	7461	10075	10075					0.024420714145321654
EPRAIPPLPGR	11	Unmodified	_EPRAIPPLPGR_					0	0	0		ENST00000394790.2_1_10:75532144-75533060:+|nuORF;ENST00000465695.1_1_10:75532330-75533574:+|nuORF	ENST00000394790.2_1_10:75532144-75533060:+|nuORF	ENST00000394790.2_1_10:75532144-75533060:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	602.368896484375	2	601.853847	1201.69314	1.4684	0.00088377	2.8422	0.0017106	4.3106	0.0025944	601.8554478645528	143.92	1.0305	143.92	143.61	144.64	0					62	20	5	0	0	0	0.48812	1	16851	16851		54.722	2.5552	1	1034600			9113	11277	7452	7462	10076	10076					0.10036187416926623
EPRAKRLTF	9	Unmodified	_EPRAKRLTF_					0	0	0			REV__ENST00000569963.1_1_16:66860370-66864856:-|nuORF	REV__ENST00000569963.1_1_16:66860370-66864856:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.2684326171875	2	559.327465	1116.64038	-0.089214	-4.99E-05	-1.4485	-0.00081018	-1.5377	-0.00086008	559.3265404310345	42.699	0.3145	39.707	39.555	39.869	-2.9915					7	5	2	0	0	0	0.027462	1	1996	1996		26.693	0	1	11280	+		9114	27731	7453	7463	10077	10077					0.08672229354124283
EPREWAVL	8	Unmodified	_EPREWAVL_					0	0	0			REV__ENST00000559327.1_1_15:65676349-65688574:-|nuORF	REV__ENST00000559327.1_1_15:65676349-65688574:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.31268310546875	2	500.266542	998.51853	0.9908	0.00049566	0.66248	0.00033141	1.6533	0.00082708	500.2667388480555	129.22	1.5822	127.76	127.5	129.08	-1.4565					47	31	3	0	0	0	0.028476	1	12394	12394		38.806	0	1	42364	+		9115	17634	7454	7464	10078	10078					0.01921187271761937
EPRKNRPPIA	10	Unmodified	_EPRKNRPPIA_					0	0	0		ENST00000482929.6_1_1:35925981-35940435:-|nuORF;ENST00000485551.5_1_1:35906621-35936502:-|nuORF;KIAA0319L|p.E866Vfs*20|1|0.09|ENSG00000142687|chr1:35444220-35444221|-/TAAACAACAAGAGCTAGAAGTGGGTTTAA|frameshift_variant;KIAA0319L|p.E866Dfs*33|1|0.09|ENSG00000142687|chr1:35444219-35444220|-/A|frameshift_variant;nc|ENSG00000142687|Q8IZA0-2|KIAA0319L;ENSG00000142687|ENST00000325722|KIAA0319L	ENST00000482929.6_1_1:35925981-35940435:-|nuORF	ENST00000482929.6_1_1:35925981-35940435:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	589.343017578125	2	589.343646	1176.67274	-5.1334	-0.0030254	3.8974	0.0022969	-1.236	-0.00072842	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.72319	1	12651	12651		27.882	1.1893	1	589610			9116	4992	7455	7465	10079	10079					0.09147016757151505
EPRKQATV	8	Unmodified	_EPRKQATV_					0	0	0			REV__ENSG00000124383|ENST00000244230|MPHOSPH10	REV__ENSG00000124383|ENST00000244230|MPHOSPH10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.79364013671875	2	464.764166	927.513779	-1.184	-0.00055026	1.0161	0.00047226	-0.16783	-7.8E-05	464.76450410532453	54.83	0.92333	51.582	51.234	52.157	-3.2474					28	17	2	0	0	0	0.028476	1	3482	3482		38.806	0	1	111210	+		9117	18684	7456	7466	10080	10080					0.04712303128997064
EPRLCPHAK	9	Unmodified	_EPRLCPHAK_					0	0	0			REV__ENSG00000218891|ENST00000325421|ZNF579	REV__ENSG00000218891|ENST00000325421|ZNF579	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.341796875	2	525.779293	1049.54403	-1.3964	-0.0007342	-3.286	-0.0017277	-4.6824	-0.0024619	525.7772370884219	87.335	0.80481	84.708	84.448	85.253	-2.6269					34	15	4	0	0	0	0.027418	1	7442	7442		49.442	0	1	132740	+		9118	23331	7457	7467	10081	10081					0.021243385225034217
EPRLHRNQG	9	Unmodified	_EPRLHRNQG_					0	0	0			REV__ENST00000341165.10_2_17:41322502-41322607:+|nuORF	REV__ENST00000341165.10_2_17:41322502-41322607:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.824951171875	2	553.794321	1105.57409	3.764	0.0020845	4.4709	0.0024759	8.2349	0.0045604	553.7972346343984	88.232	0.25464	88.232	88.087	88.342	0					7	5	2	0	0	0	0.027462	1	9355	9355		20.947	0	1	192820	+		9119	24632	7458	7468	10082	10082					0.025524135120804203
EPRLSLLWLR	10	Unmodified	_EPRLSLLWLR_					0	0	0			REV__ENSG00000253831|ENST00000454449|ETV3L	REV__ENSG00000253831|ENST00000454449|ETV3L	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8831787109375	2	641.885147	1281.75574	-4.7067	-0.0030211	0.74437	0.0004778	-3.9623	-0.0025433	641.8854486748878	156.42	0.77325	154.87	154.64	155.41	-1.545					50	23	3	0	0	0	0.73378	1	15482	15482		26.693	3.6504	1	27475	+		9120	23508	7459	7469	10083	10083					0.12613333485114708
EPRPIGCA	8	Unmodified	_EPRPIGCA_					0	0	0		ENST00000376687.3_1_X:48555050-48555188:+|nuORF	ENST00000376687.3_1_X:48555050-48555188:+|nuORF	ENST00000376687.3_1_X:48555050-48555188:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	421.25677490234375	2	421.713088	841.411622	0.42091	0.0001775	-3.9421	-0.0016624	-3.5212	-0.0014849	421.7112881096414	58.215	1.0316	58.215	57.941	58.973	0					55	24	3	0	0	0	0.028476	1	5029	5029		25.45	0	1	3988200			9121	11076	7460	7470	10084	10084					-0.0154268621428173
EPRPPNWQ	8	Unmodified	_EPRPPNWQ_					0	0	0			REV__ENSG00000016490|ENST00000394711|CLCA1	REV__ENSG00000016490|ENST00000394711|CLCA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.8174743652344	2	512.253966	1022.49338	1.1909	0.00061003	3.4633	0.0017741	4.6542	0.0023841	512.2562926622995	145.72	0.48792	145.72	145.39	145.88	0					11	9	2	0	0	0	0.028476	1	17017	17017		29.15	10.825	1	31864	+		9122	16524	7461	7471	10085	10085					-0.01696867530813506
EPRPPPPPK	9	Unmodified	_EPRPPPPPK_					0	0	0			REV__ENST00000438423.6_1_15:57210887-57211004:+|nuORF	REV__ENST00000438423.6_1_15:57210887-57211004:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7882995605469	2	507.790184	1013.56581	-0.71965	-0.00036543	-3.7944	-0.0019267	-4.514	-0.0022922	507.78818211844305	46.857	1.6349	44.147	43.646	45.281	-2.7097					89	32	4	0	0	0	0.44568	1	2808	2808		47.657	1.7054	1	755080	+		9123	25811	7462	7472	10086	10086					0.05957466542747625
EPRQMAKLIL	10	Unmodified	_EPRQMAKLIL_					0	0	0			REV__ENST00000362077.4_1_21:35445925-35635139:+|nuORF	REV__ENST00000362077.4_1_21:35445925-35635139:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	400.57598876953125	3	400.237398	1197.69036	1.2548	0.0005022	1.8165	0.00072703	3.0713	0.0012292	400.2379774724624	58.599	1.5357	55.818	55.487	57.022	-2.7801					51	29	3	0	0	0	0.026674	1	4327	4327		40.058	4.88	1	173320	+		9124	23470	7463	7473	10087	10087					0.09942595967777379
EPRQRFWRHWL	11	Unmodified	_EPRQRFWRHWL_					0	0	0		ENSG00000134020|ENST00000256404|PEBP4	ENSG00000134020|ENST00000256404|PEBP4	ENSG00000134020|ENST00000256404|PEBP4	MULTI-MSMS	OvCa99_classI_Rep5	1	538.2913818359375	3	537.619892	1609.83785	-0.1427	-7.6716E-05	-3.3856	-0.0018202	-3.5283	-0.0018969	537.6177967736215	60.413	1.0914	60.413	60.153	61.245	0					88	25	5	0	0	0	0.72493	1	5328	5328		16.53	6.8837	1	7591000			9125	4251	7464	7474	10088	10088					0.057322486168004616
EPRRGKAR	8	Unmodified	_EPRRGKAR_					0	0	0		ENST00000437621.6_1_7:1626575-1627631:+|nuORF;nc|ENSG00000230487|Q96PY0|PSMG3-AS1	ENST00000437621.6_1_7:1626575-1627631:+|nuORF	ENST00000437621.6_1_7:1626575-1627631:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	484.7749938964844	2	485.288674	968.562795	-1.388	-0.00067359	3.7835	0.0018361	2.3955	0.0011625	485.2902850884183	91.568	0.90866	89.544	89.18	90.089	-2.0241					53	17	5	0	0	0	0.028476	1	5795	5795		16.473	0	1	167650			9126	11887	7465	7475	10089	10089					0.07725636208613196
EPRRRAPPLS	10	Unmodified	_EPRRRAPPLS_					0	0	0			REV__ENST00000310164.2_1_X:117957810-117958584:+|nuORF	REV__ENST00000310164.2_1_X:117957810-117958584:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	589.8255615234375	2	589.841271	1177.66799	-1.7676	-0.0010426	2.0518	0.0012103	0.28424	0.00016766	589.8425493286092	76.118	0.25472	73.747	73.518	73.773	-2.3715					7	4	2	0	0	0	0.026956	1	3896	3896		14.137	0	1	19887	+		9127	24338	7466	7476	10090	10090					0.08626132614381277
EPRSIGVSKLL	11	Unmodified	_EPRSIGVSKLL_					0	0	0			REV__tr|A0A553SFL3|A0A553SFL3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09110PE=3SV=1	REV__tr|A0A553SFL3|A0A553SFL3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09110PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	400.24346923828125	3	400.243317	1197.70812	1.3067	0.00052301	0.10698	4.2817E-05	1.4137	0.00056583	400.2432245254957	39.743	1.7317	37.033	36.755	38.487	-2.7097					74	34	3	0	0	0	0.68059	1	1981	1981		36.318	5.7488	1	139570	+		9128	29590	7467	7477	10091	10091					0.11717634494289086
EPRSLLFF	8	Unmodified	_EPRSLLFF_					0	0	0		nc|ENSG00000204644|Q9NU63|ZFP57	nc|ENSG00000204644|Q9NU63|ZFP57	nc|ENSG00000204644|Q9NU63|ZFP57	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.34063720703125	2	504.779285	1007.54402	2.4113	0.0012172	2.2317	0.0011265	4.643	0.0023437	504.77994714107126	135.33	1.0381	133.79	133.31	134.35	-1.5437					34	20	2	0	0	0	0.028476	1	13146	13146		57.811	24.296	1	21935			9129	15271	7468	7478	10092	10092					0.04054661794191361
EPRSRPAPA	9	Unmodified	_EPRSRPAPA_					0	0	0			REV__ENST00000333602.10_1_3:195635568-195635940:-|nuORF	REV__ENST00000333602.10_1_3:195635568-195635940:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.75372314453125	2	490.76724	979.519927	-1.2869	-0.00063157	-0.07853	-3.854E-05	-1.3654	-0.00067011	490.76737553824665	34.702	0.32485	34.702	34.586	34.911	0					8	6	2	0	0	0	0.027462	1	1694	1694		25.574	0	1	32366	+		9130	24556	7469	7479	10093	10093					0.029348213605089768
EPRTTLGL	8	Unmodified	_EPRTTLGL_					0	0	0			REV__tr|A0A553SSL8|A0A553SSL8_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_03375PE=4SV=1	REV__tr|A0A553SSL8|A0A553SSL8_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_03375PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.71728515625	2	443.753267	885.491981	0.97648	0.00043332	0.008547	3.7928E-06	0.98503	0.00043711	443.7531384269264	58.41	0.41892	58.41	58.194	58.613	0					17	9	2	0	0	0	0.028476	1	4962	4962		30.504	2.6214	1	207570	+		9131	30848	7470	7480	10094	10094					0.04465498380432109
EPRVRLRSGA	10	Unmodified	_EPRVRLRSGA_					0	0	0		LOXL4|p.V443Pfs*13|1|0.36|ENSG00000138131|chr10:98256881-98256882|-/AGTGCACCGG|frameshift_variant;ENSG00000138131|ENST00000260702|LOXL4	LOXL4|p.V443Pfs*13|1|0.36|ENSG00000138131|chr10:98256881-98256882|-/AGTGCACCGG|frameshift_variant	LOXL4|p.V443Pfs*13|1|0.36|ENSG00000138131|chr10:98256881-98256882|-/AGTGCACCGG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.281982421875	2	570.833446	1139.65234	2.6372	0.0015054	-3.2041	-0.001829	-0.56687	-0.00032359	570.831277952232	96.384	0.54279	96.384	96.126	96.668	0					28	12	3	0	0	0	0.026653	1	10554	10554		49.536	3.5638	1	515590			9132	4661	7471	7481	10095	10095					0.08809846097324225
EPSFSSGIPL	10	Unmodified	_EPSFSSGIPL_					0	0	0			REV__tr|A0A7D6VVN7|A0A7D6VVN7_9CLOTATP-dependentzincmetalloproteaseFtsHOS=ClostridiumintestinaleOX=36845GN=hflBPE=3SV=1	REV__tr|A0A7D6VVN7|A0A7D6VVN7_9CLOTATP-dependentzincmetalloproteaseFtsHOS=ClostridiumintestinaleOX=36845GN=hflBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.7523803710938	2	517.263665	1032.51278	-0.50147	-0.00025939	0.73267	0.00037899	0.2312	0.00011959	517.2637827365397	99.42	1.8879	98.59	97.67	99.558	-0.83051					46	37	2	0	0	0	0.026665	1	8995	8995		34.173	12.213	1	26665	+		9133	31728	7472	7482	10096	10096					-0.0021795603054215462
EPSGGNLSPQ	10	Unmodified	_EPSGGNLSPQ_					0	0	0			REV__ENSG00000132740|ENST00000255078|IGHMBP2	REV__ENSG00000132740|ENST00000255078|IGHMBP2	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.3002014160156	2	493.232896	984.451239	1.8121	0.00089381	-0.91423	-0.00045093	0.89791	0.00044288	493.2323184791287	91.004	0.98507	89.768	89.341	90.326	-1.2355					27	18	2	0	0	0	0.026681	1	8101	8101		36.447	0	1	46016	+		9134	19102	7473	7483	10097	10097					-0.04160887729847218
EPSGGNLSPQ	10	Unmodified	_EPSGGNLSPQ_					0	0	0			REV__ENSG00000132740|ENST00000255078|IGHMBP2	REV__ENSG00000132740|ENST00000255078|IGHMBP2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	493.232896	984.451239	-1.2578	-0.0006204	1.8482	0.0009116	0.5904	0.0002912	493.23375954864963	91.737	0.65616	89.713	89.433	90.089	-2.0241	-0.042237	0.0012642	NaN	44.377	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66589	+		9135	19102	7473	7483							-0.04160887729847218
EPSKDSSEEPI	11	Unmodified	_EPSKDSSEEPI_					0	0	0			REV__nc|ENSG00000146147|Q5VWP3-1|MLIP	REV__nc|ENSG00000146147|Q5VWP3-1|MLIP	MULTI-MSMS	OvCa99_classI_Rep5	1	609.2788696289062	2	609.28024	1216.54593	1.0212	0.00062222	-3.6302	-0.0022118	-2.6089	-0.0015896	609.278067547011	151.5	0.54355	151.5	151.2	151.74	0					19	10	3	0	0	0	0.56391	1	17746	17746		47.96	10.148	1	101120	+		9136	19996	7474	7484	10098	10098					-0.053684187691715124
EPSKSHTKSL	10	Unmodified	_EPSKSHTKSL_					0	0	0			REV__nc|ENSG00000182463|Q9NRE2-2|TSHZ2	REV__nc|ENSG00000182463|Q9NRE2-2|TSHZ2	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.282470703125	2	557.29857	1112.58259	2.9185	0.0016265	2.9442	0.0016408	5.8627	0.0032673	557.3008831102158	115.78	0.60342	115.78	115.54	116.14	0					22	12	3	0	0	0	0.026714	1	13243	13243		35.152	0	1	375850	+		9137	22295	7475	7485	10099	10099					0.030799226380622713
EPSKWAAR	8	Unmodified	_EPSKWAAR_					0	0	0			REV__ENST00000590878.1_1_17:74623349-74639792:-|nuORF	REV__ENST00000590878.1_1_17:74623349-74639792:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.2371826171875	2	472.751059	943.487565	0.093076	4.4002E-05	-0.1647	-7.7864E-05	-0.071628	-3.3862E-05	472.7508121519918	60.822	0.7303	60.822	60.602	61.332	0					25	16	2	0	0	0	0.028476	1	5371	5371		30.504	5.0535	1	588980	+		9138	16881	7476	7486	10100	10100					0.013560339575064972
EPSNNSKPWFY	11	Unmodified	_EPSNNSKPWFY_					0	0	0			REV__ENSG00000166363|ENST00000299454|OR10A5	REV__ENSG00000166363|ENST00000299454|OR10A5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	457.2834777832031	3	456.878815	1367.61462	0.31497	0.0001439	0.54541	0.00024918	0.86038	0.00039309	456.87761272403407	59.543	0.24629	56.151	56.051	56.297	-3.392					5	4	2	0	0	0	0.025772	1	3991	3991		26.75	0.85799	1	4452.1	+		9139	21184	7477	7487	10101	10101					-0.0544870967883071
EPSPQKELI	9	Unmodified	_EPSPQKELI_					0	0	0			REV__nc|ENSG00000117523|Q9Y520-2|PRRC2C	REV__nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.78369140625	2	520.784764	1039.55498	-0.5658	-0.00029466	-2.0942	-0.0010906	-2.66	-0.0013853	520.7835306611641	20.373	0.97506	19.035	18.762	19.737	-1.3386					36	19	3	0	0	0	0.67509	1	46	46		23.042	3.6825	1	135960	+		9140	18355	7478	7488	10102	10102					0.03678019377821329
EPSPWGPL	8	Unmodified	_EPSPWGPL_					0	0	0		ENSG00000126005|ENST00000456790|MMP24OS	ENSG00000126005|ENST00000456790|MMP24OS	ENSG00000126005|ENST00000456790|MMP24OS	MULTI-SECPEP	OvCa9_classI_Rep4_	4	441.7861022949219	2	441.721436	881.428318	-0.68947	-0.00030455	-3.4593	-0.0015281	-4.1488	-0.0018326	441.7196283599366	103.6	0.93983	101.49	101.02	101.96	-2.1192					26	17	2	0	0	0	0.028476	1	9390	9390		8.8223	0	1	26598			9141	3761	7479	7489	10103	10103					-0.017138620566697682
EPSVVAINN	9	Unmodified	_EPSVVAINN_					0	0	0		tr|A0A7D6VPW8|A0A7D6VPW8_9CLOTCellshape-determiningproteinMreBOS=ClostridiumintestinaleOX=36845GN=mreBPE=3SV=1	tr|A0A7D6VPW8|A0A7D6VPW8_9CLOTCellshape-determiningproteinMreBOS=ClostridiumintestinaleOX=36845GN=mreBPE=3SV=1	tr|A0A7D6VPW8|A0A7D6VPW8_9CLOTCellshape-determiningproteinMreBOS=ClostridiumintestinaleOX=36845GN=mreBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	471.7476501464844	2	471.748182	941.481811	-0.87595	-0.00041323	0.52109	0.00024582	-0.35487	-0.00016741	471.7482986041781	116.14	1.3366	116.03	115.69	117.02	-0.11777					59	26	3	0	0	0	0.55588	1	11087	11087		37.159	2.9866	1	260110			9142	34804	7480	7490	10104	10104					0.008728906551823457
EPSVVAINN	9	Unmodified	_EPSVVAINN_					0	0	0		tr|A0A7D6VPW8|A0A7D6VPW8_9CLOTCellshape-determiningproteinMreBOS=ClostridiumintestinaleOX=36845GN=mreBPE=3SV=1	tr|A0A7D6VPW8|A0A7D6VPW8_9CLOTCellshape-determiningproteinMreBOS=ClostridiumintestinaleOX=36845GN=mreBPE=3SV=1	tr|A0A7D6VPW8|A0A7D6VPW8_9CLOTCellshape-determiningproteinMreBOS=ClostridiumintestinaleOX=36845GN=mreBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.747314453125	2	471.748182	941.481811	0.32588	0.00015373	-0.89545	-0.00042243	-0.56956	-0.00026869	471.7476954095205	117.11	2.2576	115.75	115.46	117.71	-1.3645					72	42	3	0	0	0	0.56889	1	10972	10972		35.618	1.4457	1	454660			9143	34804	7480	7490	10105	10105					0.008728906551823457
EPSYFCYL	8	Unmodified	_EPSYFCYL_					0	0	0			REV__nc|ENSG00000182010|Q8IZC4-2|RTKN2	REV__nc|ENSG00000182010|Q8IZC4-2|RTKN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.3007507324219	2	511.220411	1020.42627	0.8936	0.00045683	-2.6274	-0.0013432	-1.7338	-0.00088636	511.21886068260466	142.06	0.5007	142.06	141.83	142.34	0					16	9	2	0	0	0	0.028476	1	16602	16602		23.037	11.526	1	36710	+		9144	22257	7481	7491	10106	10106					-0.08312658856789312
EPSYLTGQE	9	Unmodified	_EPSYLTGQE_					0	0	0			REV__PKP4|p.R582*|1|0.05|ENSG00000144283|chr2:158642533-158642534|-/T|frameshift_variant	REV__PKP4|p.R582*|1|0.05|ENSG00000144283|chr2:158642533-158642534|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.2293701171875	2	512.235104	1022.45566	-4.9043	-0.0025121	-0.92731	-0.000475	-5.8316	-0.0029871	512.2345905733438	155.81	0.59311	154.32	154.06	154.66	-1.4911					24	17	2	0	0	0	0.5811	1	15427	15427		34.173	2.6427	1	22049	+		9145	19899	7482	7492	10107	10107					-0.05467423306959063
EPSYLTGQE	9	Unmodified	_EPSYLTGQE_					0	0	0			REV__PKP4|p.R582*|1|0.05|ENSG00000144283|chr2:158642533-158642534|-/T|frameshift_variant	REV__PKP4|p.R582*|1|0.05|ENSG00000144283|chr2:158642533-158642534|-/T|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	512.235104	1022.45566	-5.5734	-0.0028549	0.45085	0.00023094	-5.1225	-0.0026239	512.2352276923534	155.37	0.5755	154.3	154.04	154.61	-1.073	-0.010193	0.0010121	NaN	34.173	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10372	+		9146	19899	7482	7492							-0.05467423306959063
EPSYLTGQE	9	Unmodified	_EPSYLTGQE_					0	0	0			REV__PKP4|p.R582*|1|0.05|ENSG00000144283|chr2:158642533-158642534|-/T|frameshift_variant	REV__PKP4|p.R582*|1|0.05|ENSG00000144283|chr2:158642533-158642534|-/T|frameshift_variant	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	512.235104	1022.45566	-4.9043	-0.0025121	-0.92731	-0.000475	-5.8316	-0.0029871	512.2345905733438	155.81	0.59311	154.32	154.06	154.66	-1.4911	0.010193	-0.00039981	NaN	34.173	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22049	+		9147	19899	7482	7492							-0.05467423306959063
EPTAEVVE	8	Unmodified	_EPTAEVVE_					0	0	0			REV__ENST00000468290.1_1_9:136198707-136199617:-|nuORF	REV__ENST00000468290.1_1_9:136198707-136199617:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	437.7530517578125	2	437.21364	872.412728	0.41913	0.00018325	-1.3046	-0.0005704	-0.88548	-0.00038715	437.214338172193	39.289	0.44781	39.289	38.972	39.42	0					14	9	2	0	0	0	0.028476	1	2258	2258		24.203	0	1	46425	+		9148	20098	7483	7493	10108	10108					-0.028581933643749835
EPTAGRKT	8	Unmodified	_EPTAGRKT_					0	0	0			REV__tr|A0A553SL14|A0A553SL14_NIACIMethionineaminopeptidaseOS=NialliacirculansOX=1397GN=mapPE=3SV=1	REV__tr|A0A553SL14|A0A553SL14_NIACIMethionineaminopeptidaseOS=NialliacirculansOX=1397GN=mapPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	430.23565673828125	2	430.235242	858.45593	-0.64176	-0.00027611	0.96597	0.00041559	0.32421	0.00013949	430.23542509848426	50.13	0.7856	50.13	49.899	50.685	0					42	17	3	0	0	0	0.58851	1	3792	3792		66.429	2.222	1	1497200	+		9149	30174	7484	7494	10109	10109					0.02104041203563156
EPTAGRKT	8	Unmodified	_EPTAGRKT_					0	0	0			REV__tr|A0A553SL14|A0A553SL14_NIACIMethionineaminopeptidaseOS=NialliacirculansOX=1397GN=mapPE=3SV=1	REV__tr|A0A553SL14|A0A553SL14_NIACIMethionineaminopeptidaseOS=NialliacirculansOX=1397GN=mapPE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	430.235242	858.45593	-0.64176	-0.00027611	0.96597	0.00041559	0.32421	0.00013949	430.23542509848426	50.13	0.7856	50.13	49.899	50.685	0	0	0	NaN	66.429	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1497200	+		9150	30174	7484	7494							0.02104041203563156
EPTFLNFVF	9	Unmodified	_EPTFLNFVF_					0	0	0			REV__nc|ENSG00000160505|Q96MN2-2|NLRP4	REV__nc|ENSG00000160505|Q96MN2-2|NLRP4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.8177490234375	2	557.2844	1112.55425	-0.17258	-9.6176E-05	-3.186	-0.0017755	-3.3586	-0.0018717	557.282556316758	92.308	1.2156	89.766	89.262	90.478	-2.5425					40	23	2	0	0	0	0.027448	1	8017	8017		35.618	0	1	115830	+		9151	20663	7485	7495	10110	10110					0.002472247287641949
EPTLLCELLVC	11	Unmodified	_EPTLLCELLVC_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-SECPEP	OvCa99_classI_Rep5	1	616.848876953125	2	616.816892	1231.61923	1.7108	0.0010552	-2.2078	-0.0013618	-0.49699	-0.00030655	616.8148340917546	134.76	0.42725	134.76	134.61	135.04	0					12	9	2	0	0	0	0.02538	1	15672	15672		45.972	7.2186	1	62807	+		9152	17764	7486	7496	10111	10111					0.012687151481031833
EPTMTFWY	8	Unmodified	_EPTMTFWY_					0	0	0			REV__nc|ENSG00000136114|Q9NS62-3|THSD1	REV__nc|ENSG00000136114|Q9NS62-3|THSD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.7201538085938	2	537.733686	1073.45282	-2.1847	-0.0011748	2.113	0.0011362	-0.071719	-3.8565E-05	537.7347351781061	118.84	0.82751	117.5	117.31	118.14	-1.3444					23	15	2	0	0	0	0.028476	1	11166	11166		40.573	5.3719	1	32967	+		9153	19359	7487	7497	10112	10112					-0.08096969965458811
EPTMTFWY	8	Unmodified	_EPTMTFWY_					0	0	0			REV__nc|ENSG00000136114|Q9NS62-3|THSD1	REV__nc|ENSG00000136114|Q9NS62-3|THSD1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	537.733686	1073.45282	-2.09	-0.0011238	1.8844	0.0010133	-0.20552	-0.00011052	537.7346049829421	117.83	0.69523	117.68	117.49	118.18	-0.14755	0.10216	0.00031158	NaN	40.573	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13641	+		9154	19359	7487	7497							-0.08096969965458811
EPTMTFWY	8	Unmodified	_EPTMTFWY_					0	0	0			REV__nc|ENSG00000136114|Q9NS62-3|THSD1	REV__nc|ENSG00000136114|Q9NS62-3|THSD1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	537.733686	1073.45282	1.0718	0.00057635	-1.9427	-0.0010447	-0.87088	-0.0004683	537.733029415904	118.59	0.64421	117.56	117.34	117.98	-1.0271	-0.019583	-0.0038044	NaN	40.573	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27763	+		9155	19359	7487	7497							-0.08096969965458811
EPTNSSLNLS	10	Unmodified	_EPTNSSLNLS_					0	0	0		ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.81884765625	2	531.259111	1060.50367	0.20514	0.00010899	-0.42132	-0.00022383	-0.21618	-0.00011485	531.7616063006548	139.83	0.39813	138.33	138.26	138.65	-1.4952					9	7	2	0	0	0	0.026867	1	13649	13649		51.193	17.02	1	9624.3			9156	8861	7488	7498	10113	10113					-0.024163493868854857
EPTPVREEI	9	Unmodified	_EPTPVREEI_					0	0	0		GAPDHS|p.T259Sfs*103|1|0.07|ENSG00000105679|chr19:35543373-35543374|-/GCTTTGCAGGGCAGCCCATTCATTCATT|frameshift_variant;ENSG00000105679|ENST00000222286|GAPDHS	GAPDHS|p.T259Sfs*103|1|0.07|ENSG00000105679|chr19:35543373-35543374|-/GCTTTGCAGGGCAGCCCATTCATTCATT|frameshift_variant	GAPDHS|p.T259Sfs*103|1|0.07|ENSG00000105679|chr19:35543373-35543374|-/GCTTTGCAGGGCAGCCCATTCATTCATT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.2796020507812	2	535.279846	1068.54514	-1.5866	-0.00084927	0.65762	0.00035201	-0.92897	-0.00049726	535.2801679388406	73.829	1.4846	70.433	70.076	71.56	-3.3961					66	30	3	0	0	0	0.14998	1	5752	5752		84.916	8.1414	1	827350			9157	2490	7489	7499	10114	10114					0.013608313724262189
EPTPVREEI	9	Unmodified	_EPTPVREEI_					0	0	0		GAPDHS|p.T259Sfs*103|1|0.07|ENSG00000105679|chr19:35543373-35543374|-/GCTTTGCAGGGCAGCCCATTCATTCATT|frameshift_variant;ENSG00000105679|ENST00000222286|GAPDHS	GAPDHS|p.T259Sfs*103|1|0.07|ENSG00000105679|chr19:35543373-35543374|-/GCTTTGCAGGGCAGCCCATTCATTCATT|frameshift_variant	GAPDHS|p.T259Sfs*103|1|0.07|ENSG00000105679|chr19:35543373-35543374|-/GCTTTGCAGGGCAGCCCATTCATTCATT|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	535.279846	1068.54514	-0.88189	-0.00047206	0.42943	0.00022987	-0.45246	-0.00024219	535.2799637835217	72.838	1.6212	70.438	69.907	71.528	-2.3999	0.0024407	-0.00011045	NaN	84.916	76	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179360			9158	2490	7489	7499							0.013608313724262189
EPTQKEKY	8	Unmodified	_EPTQKEKY_					0	0	0			REV__ENST00000450277.2_1_17:18523453-18528799:-|nuORF	REV__ENST00000450277.2_1_17:18523453-18528799:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.3072509765625	2	511.761289	1021.50803	0.43142	0.00022079	0.18555	9.4956E-05	0.61697	0.00031574	511.76132889990083	73.965	0.76536	73.965	73.792	74.557	0					40	19	4	0	0	0	0.028476	1	7346	7346		35.618	0	1	2248100	+		9159	21518	7490	7500	10115	10115					-0.0018684017333043812
EPTRILPLS	9	Unmodified	_EPTRILPLS_					0	0	0			REV__nc|ENSG00000085831|Q5SRH9-3|TTC39A	REV__nc|ENSG00000085831|Q5SRH9-3|TTC39A	MULTI-MSMS	OvCa9_classI_Rep2	2	513.30322265625	2	513.303124	1024.5917	-0.90798	-0.00046607	0.2818	0.00014465	-0.62618	-0.00032142	513.303241645798	102.61	2.5703	101.93	101.49	104.06	-0.68459					128	51	4	0	0	0	0.33652	1	9492	9492		58.782	0.97068	1	1179700	+		9160	28744	7491	7501	10116	10116					0.08038315994394907
EPTSIMSCI	9	Unmodified	_EPTSIMSCI_					0	0	0			REV__XRCC5-VWA3B|1|fusion	REV__XRCC5-VWA3B|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.2810363769531	2	490.725003	979.435454	2.0405	0.0010013	1.6423	0.00080592	3.6829	0.0018073	490.72580098476743	95.128	0.37958	95.128	94.949	95.328	0					14	8	2	0	0	0	0.027462	1	10351	10351		29.15	3.6994	1	240110	+		9161	21390	7492	7502	10117	10117					-0.055086335627606786
EPTSQKPGV	9	Unmodified	_EPTSQKPGV_					0	0	0		nc|ENSG00000167644|Q9GZP8-2|IMUP;ENSG00000167644|ENST00000301246|C19orf33;ENST00000589986.2_1_19:38794923-38795601:+|nuORF	nc|ENSG00000167644|Q9GZP8-2|IMUP	nc|ENSG00000167644|Q9GZP8-2|IMUP	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.7475280761719	2	471.748182	941.481811	0.32588	0.00015373	-0.89545	-0.00042243	-0.56956	-0.00026869	471.7476954095205	117.11	2.2576	115.75	115.46	117.71	-1.3645					72	42	3	0	0	0	0.56889	1	10998	10998		35.618	3.6634	1	454660			9162	6821	7493	7503	10118	10118					0.00872890655205083
EPTSRTKLP	9	Unmodified	_EPTSRTKLP_					0	0	0			REV__ENST00000561189.1_1_15:44789252-44795711:+|nuORF	REV__ENST00000561189.1_1_15:44789252-44795711:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	514.3109741210938	2	514.790381	1027.56621	-1.085	-0.00055855	-2.3074	-0.0011878	-3.3924	-0.0017464	514.7882467115155	52.331	0.24723	49.518	49.394	49.642	-2.8129					5	4	2	0	0	0	0.027462	1	3496	3496		15.642	0	1	5161.6	+		9163	19475	7494	7504	10119	10119					0.05352841471949432
EPTTVTMILK	10	Unmodified	_EPTTVTMILK_					0	0	0			REV__ENSG00000140836|ENST00000268489|ZFHX3	REV__ENSG00000140836|ENST00000268489|ZFHX3	MULTI-MSMS	OvCa9_classI_Rep2	2	566.8159790039062	2	566.81775	1131.62095	-0.034625	-1.9626E-05	-3.3718	-0.0019112	-3.4064	-0.0019308	566.8158254764281	108.92	2.4235	108.69	108.32	110.75	-0.22498					109	48	5	0	0	0	0.50999	2	10209	10209;10221		52.937	3.4952	1	1117900	+		9164	19702	7495	7505	10120;10121	10120					0.060400922283406544
EPTVCYRR	8	Unmodified	_EPTVCYRR_					0	0	0			REV__tr|A0A553SFS9|A0A553SFS9_NIACIATP-dependenthelicase/deoxyribonucleasesubunitBOS=NialliacirculansOX=1397GN=addBPE=3SV=1	REV__tr|A0A553SFS9|A0A553SFS9_NIACIATP-dependenthelicase/deoxyribonucleasesubunitBOS=NialliacirculansOX=1397GN=addBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	512.8353271484375	2	512.255651	1022.49675	-0.37814	-0.00019371	-3.7522	-0.0019221	-4.1304	-0.0021158	512.253755820402	89.64	1.3721	87.56	87.143	88.516	-2.0805					39	26	2	0	0	0	0.028476	1	5540	5540		24.203	0	1	15905	+		9165	29618	7496	7506	10122	10122					-0.013599407484548465
EPTVTTKLL	9	Unmodified	_EPTVTTKLL_					0	0	0			REV__ENSG00000151704|ENST00000392666|KCNJ1	REV__ENSG00000151704|ENST00000392666|KCNJ1	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2978515625	2	501.297507	1000.58046	0.92487	0.00046364	-1.2706	-0.00063695	-0.34573	-0.00017331	501.2967802453463	121.12	2.2498	120.09	119.75	122	-1.0271					110	42	5	0	0	0	0.079296	1	9248	9248		102.77	8.7669	1	667950	+		9166	20249	7497	7507	10123	10123					0.08019493900224006
EPTVTTKLL	9	Unmodified	_EPTVTTKLL_					0	0	0			REV__ENSG00000151704|ENST00000392666|KCNJ1	REV__ENSG00000151704|ENST00000392666|KCNJ1	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.2958679199219	2	501.297507	1000.58046	-0.7406	-0.00037126	0.40125	0.00020114	-0.33935	-0.00017012	501.29758752104317	121.49	1.58	120.14	119.79	121.37	-1.3479					96	30	5	0	0	0	0.33652	1	11491	11491		58.782	2.0609	1	552180	+		9167	20249	7497	7507	10124	10124					0.08019493900224006
EPTWPPPL	8	Unmodified	_EPTWPPPL_					0	0	0		nc|ENSG00000174807|Q9HCU0-2|CD248;ENSG00000174807|ENST00000311330|CD248	nc|ENSG00000174807|Q9HCU0-2|CD248	nc|ENSG00000174807|Q9HCU0-2|CD248	MULTI-SECPEP	OvCa9_classI_Rep2	2	468.30548095703125	2	468.744911	935.475269	-1.1981	-0.00056162	-3.0324	-0.0014214	-4.2306	-0.0019831	468.74333574574706	101.37	1.438	100.61	99.774	101.21	-0.764					53	28	2	0	0	0	0.028476	1	9352	9352		35.201	0	1	19700			9168	7494	7498	7508	10125	10125					0.004949974944679525
EPTYLHNSI	9	Unmodified	_EPTYLHNSI_					0	0	0			REV__ENST00000519356.1_1_8:33331766-33367302:-|nuORF	REV__ENST00000519356.1_1_8:33331766-33367302:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	537.271240234375	2	537.266739	1072.51892	2.6082	0.0014013	3.1803	0.0017087	5.7886	0.00311	537.2684896382216	88.872	4.5522	88.872	88.003	92.555	0					290	110	5	0	0	0	0.40818	1	9644	9644		51.193	0	1	72679000	+		9169	18908	7499	7509	10126	10126					-0.014434377990482972
EPVCPEAIVCR	11	Unmodified	_EPVCPEAIVCR_					0	0	0		ENSG00000198753|ENST00000361971|PLXNB3;nc|ENSG00000198753|Q9ULL4-2|PLXNB3	ENSG00000198753|ENST00000361971|PLXNB3	ENSG00000198753|ENST00000361971|PLXNB3	MULTI-MSMS	OvCa9_classI_Rep3	3	608.295654296875	2	608.296659	1214.57876	3.6539	0.0022227	-3.5754	-0.0021749	0.078474	4.7736E-05	608.2942855637167	59.026	3.3501	55.911	55.036	58.386	-3.1147					203	93	3	0	0	0	0.69081	1	1910	1910		32.812	4.9302	1	283460			9170	8866	7500	7510	10127	10127					-0.019942064516953906
EPVEACLETV	10	Unmodified	_EPVEACLETV_					0	0	0			REV__ENSG00000257594|ENST00000529983|GALNT4	REV__ENSG00000257594|ENST00000529983|GALNT4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.7913208007812	2	545.260265	1088.50598	-1.3604	-0.00074178	3.36	0.0018321	1.9996	0.0010903	545.2616442104016	54.128	0.8706	50.88	50.466	51.336	-3.2474					34	16	3	0	0	0	0.026553	1	3343	3343		66.429	18.47	1	41379	+		9171	23547	7501	7511	10128	10128					-0.03473636973444627
EPVEPPSFD	9	Unmodified	_EPVEPPSFD_					0	0	0			REV__ENSG00000101363|ENST00000373606|MANBAL	REV__ENSG00000101363|ENST00000373606|MANBAL	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.786865234375	2	508.732197	1015.44984	2.0905	0.0010635	2.3615	0.0012014	4.452	0.0022649	509.23500193696964	118.12	0.41676	118.12	117.93	118.34	0					12	8	2	0	0	0	0.027462	1	13528	13528		17.365	0	1	66745	+		9172	17496	7502	7512	10129	10129					-0.057265218186103084
EPVGVIIL	8	Unmodified	_EPVGVIIL_					0	0	0		nc|ENSG00000198324|Q8N4B1-3|PHETA1;ENSG00000198324|ENST00000683047|PHETA1;nc|ENSG00000198324|Q8N4B1-4|PHETA1	nc|ENSG00000198324|Q8N4B1-3|PHETA1	nc|ENSG00000198324|Q8N4B1-3|PHETA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	421.25677490234375	2	420.265479	838.516405	0.073672	3.0962E-05	-3.6231	-0.0015227	-3.5494	-0.0014917	420.2639108838451	58.754	0.36	58.754	58.572	58.932	0					11	8	2	0	0	0	0.028476	1	5029	5029		8.8223	0	1	244880			9173	8806	7503	7513	10130	10130					0.09068758533953769
EPVHLTVKVTL	11	Unmodified	_EPVHLTVKVTL_					0	0	0			REV__ASTN2|p.S1123Mfs*12|1|0.41|ENSG00000148219|chr9:116487479-116487488|TCAGCAAAAC/-|frameshift_variant	REV__ASTN2|p.S1123Mfs*12|1|0.41|ENSG00000148219|chr9:116487479-116487488|TCAGCAAAAC/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	413.24005126953125	3	412.583451	1234.72852	0.28253	0.00011657	-2.769	-0.0011424	-2.4864	-0.0010259	412.5825080273949	64.11	1.0533	61.385	61.075	62.128	-2.7245					54	19	5	0	0	0	0.025818	1	4854	4854		29.551	0	1	119540	+		9174	15671	7504	7514	10131	10131					0.12054805154093629
EPVILHASQF	10	Unmodified	_EPVILHASQF_					0	0	0			REV__ENSG00000160961|ENST00000292530|ZNF333	REV__ENSG00000160961|ENST00000292530|ZNF333	MULTI-MSMS	OvCa99_classI_Rep5	1	570.8070678710938	2	570.806031	1139.59751	1.8641	0.0010641	-0.86297	-0.00049259	1.0011	0.00057146	570.8059294877565	98.523	1.4467	98.523	98.165	99.612	0					73	34	3	0	0	0	0.39172	1	10843	10843		69.628	9.5094	1	2588100	+		9175	20684	7505	7515	10132	10132					0.0332941450603812
EPVIVTEGAPI	11	Unmodified	_EPVIVTEGAPI_					0	0	0			REV__nc|ENSG00000141449|Q9C091-3|GREB1L	REV__nc|ENSG00000141449|Q9C091-3|GREB1L	MULTI-MSMS	OvCa9_classI_Rep3	3	562.8155517578125	2	562.813522	1123.61249	-2.633	-0.0014819	2.4421	0.0013745	-0.19089	-0.00010744	562.8147781508586	141.55	1.4859	140.54	140.19	141.68	-1.0106					91	29	5	0	0	0	0.28332	1	11724	11724		69.628	4.1622	1	322010	+		9176	19740	7506	7516	10133	10133					0.05562861583371159
EPVKIAAPEL	10	Unmodified	_EPVKIAAPEL_					0	0	0		ENSG00000143294|ENST00000271526|PRCC	ENSG00000143294|ENST00000271526|PRCC	ENSG00000143294|ENST00000271526|PRCC	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.810791015625	2	533.810782	1065.60701	-0.37036	-0.0001977	0.090578	4.8352E-05	-0.27978	-0.00014935	533.8107068230561	114.36	1.887	112.96	112.63	114.51	-1.3977					88	36	3	0	0	0	0.39172	1	10647	10647		69.628	6.3214	1	280680			9177	5028	7507	7517	10134	10134					0.07683182791561194
EPVKILVPEKS	11	Unmodified	_EPVKILVPEKS_					0	0	0		nc|ENSG00000064933|P54277-4|PMS1;ENST00000421722.5_1_2:190656520-190720594:+|nuORF;nc|ENSG00000064933|P54277-2|PMS1;nc|ENSG00000064933|P54277-3|PMS1;ENSG00000064933|ENST00000441310|PMS1	nc|ENSG00000064933|P54277-4|PMS1	nc|ENSG00000064933|P54277-4|PMS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.868408203125	2	619.871371	1237.72819	-1.8762	-0.001163	-1.2328	-0.00076421	-3.109	-0.0019272	619.8704234308321	147.79	3.8764	146.35	144.25	148.12	-1.4351					189	77	4	0	0	0	0.70761	1	14464	14464		27.047	0.3544	1	269210			9178	1309	7508	7518	10135	10135					0.11883385434225602
EPVLKPCRKE	10	Unmodified	_EPVLKPCRKE_					0	0	0		ENST00000589203.5_2_18:14077183-14077513:-|nuORF	ENST00000589203.5_2_18:14077183-14077513:-|nuORF	ENST00000589203.5_2_18:14077183-14077513:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	600.8114624023438	2	599.834265	1197.65398	0.96888	0.00058117	0.65592	0.00039344	1.6248	0.00097461	600.3358843083286	141.84	0.39978	141.84	141.64	142.04	0					10	7	2	0	0	0	0.026667	1	16565	16565		45.022	29.38	1	25441			9179	14084	7509	7519	10136	10136					0.06305719071042404
EPVMLVPM	8	Oxidation (M)	_EPVM(Oxidation (M))LVPM_		EPVM(0.989)LVPM(0.011)		EPVM(19)LVPM(-19)	0	0	1			REV__ENST00000560634.1_1_15:84858634-84860056:+|nuORF	REV__ENST00000560634.1_1_15:84858634-84860056:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	466.2376708984375	2	466.235007	930.455461	0.31116	0.00014507	3.8014	0.0017723	4.1125	0.0019174	466.23662450729495	43.901	2.5422	41.191	40.658	43.2	-2.7097					104	50	4	0	0	0	0.67106	1	2441	2441		49.211	8.6382	2	381230	+		9180	27623	7510	7520	10137	10137		614			-0.012548378321298514
EPVQTPQLI	9	Unmodified	_EPVQTPQLI_					0	0	0			REV__ENST00000523752.5_1_8:22880186-22885396:-|nuORF	REV__ENST00000523752.5_1_8:22880186-22885396:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	512.7866821289062	2	512.787307	1023.56006	0.11256	5.7719E-05	-0.83263	-0.00042696	-0.72007	-0.00036924	512.786824757787	108.89	2.0869	107.69	107.36	109.45	-1.1978					84	39	3	0	0	0	0.42676	1	7801	7801		49.442	4.9105	1	319940	+		9181	18520	7511	7521	10138	10138					0.049223232404415285
EPVRSKLPS	9	Unmodified	_EPVRSKLPS_					0	0	0		ENSG00000138622|ENST00000261917|HCN4	ENSG00000138622|ENST00000261917|HCN4	ENSG00000138622|ENST00000261917|HCN4	MULTI-MSMS	OvCa9_classI_Rep2	2	506.7924499511719	2	506.792924	1011.57129	-1.4847	-0.00075246	0.93079	0.00047172	-0.55395	-0.00028074	506.7934294899102	52.807	1.2341	49.993	49.591	50.826	-2.8139					59	24	4	0	0	0	0.55011	1	3546	3546		37.812	2.1932	1	256810			9182	4698	7512	7522	10139	10139					0.06597145334569632
EPVRWMYL	8	Unmodified	_EPVRWMYL_					0	0	0			REV__ENST00000416996.1_1_9:14357271-14357358:+|nuORF	REV__ENST00000416996.1_1_9:14357271-14357358:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.8095092773438	2	547.278595	1092.54264	1.9077	0.001044	2.8453	0.0015572	4.753	0.0026012	547.2800233661354	85.534	0.45766	85.534	85.292	85.75	0					17	10	3	0	0	0	0.028476	1	9000	9000		42.474	7.2737	1	338790	+		9183	25556	7513	7523	10140	10140					6.704433781123953E-05
EPVSIYEV	8	Unmodified	_EPVSIYEV_					0	0	0		tr|A0A553SJQ3|A0A553SJQ3_NIACI1,4-alpha-glucanbranchingenzymeGlgBOS=NialliacirculansOX=1397GN=glgBPE=3SV=1	tr|A0A553SJQ3|A0A553SJQ3_NIACI1,4-alpha-glucanbranchingenzymeGlgBOS=NialliacirculansOX=1397GN=glgBPE=3SV=1	tr|A0A553SJQ3|A0A553SJQ3_NIACI1,4-alpha-glucanbranchingenzymeGlgBOS=NialliacirculansOX=1397GN=glgBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	467.7894287109375	2	468.239658	934.464763	-0.67087	-0.00031413	-2.0045	-0.00093857	-2.6753	-0.0012527	468.23865675264665	45.779	0.31384	42.741	42.647	42.961	-3.0385					10	5	3	0	0	0	0.028476	1	2357	2357		31.955	1.4512	1	24110			9184	33529	7514	7524	10141	10141					-0.005090299506150586
EPVTLRSE	8	Unmodified	_EPVTLRSE_					0	0	0			REV__GLI1|p.S937*|1|0.25|ENSG00000111087|chr12:57471546-57471547|-/T|frameshift_variant	REV__GLI1|p.S937*|1|0.25|ENSG00000111087|chr12:57471546-57471547|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	465.2628479003906	2	465.748182	929.481811	-0.46685	-0.00021743	0.096757	4.5065E-05	-0.37009	-0.00017237	465.7497437742105	94.178	0.40662	93.079	92.906	93.312	-1.0995					10	7	2	0	0	0	0.028476	1	8428	8428		11.511	0	1	7556.7	+		9185	18017	7515	7525	10142	10142					0.014248906551983964
EPVTYFITF	9	Unmodified	_EPVTYFITF_					0	0	0		ENST00000494604.1_1_4:110605598-110605826:+|nuORF;ENSG00000005059|ENST00000394650|MCUB	ENST00000494604.1_1_4:110605598-110605826:+|nuORF	ENST00000494604.1_1_4:110605598-110605826:+|nuORF	MSMS	OvCa99_classI_Rep5	1	558.7863159179688	2	558.784233	1115.55391	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.96	1	148.96	148.46	149.46	0								0	0	0	0.17317	1	17436	17436		44.117	3.3386	1				9186	842	7516	7526	10143	10143					0.0007580500889616815
EPVTYFITY	9	Unmodified	_EPVTYFITY_					0	0	0		nc|ENSG00000156026|Q8NE86-3|MCU;nc|ENSG00000156026|Q8NE86-2|MCU;ENSG00000156026|ENST00000373053|MCU	nc|ENSG00000156026|Q8NE86-3|MCU	nc|ENSG00000156026|Q8NE86-3|MCU	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.780029296875	2	566.78169	1131.54883	-0.626	-0.00035481	0.68527	0.0003884	0.059267	3.3592E-05	566.7818721264231	127.12	1.1018	125.68	125.34	126.45	-1.4357					66	21	5	0	0	0	0.38529	1	12107	12107		53.351	0	1	227200			9187	5816	7517	7527	10144	10144					-0.011684988537126628
EPVYCKGR	8	Unmodified	_EPVYCKGR_					0	0	0			REV__ENSG00000165899|ENST00000547103|OTOGL	REV__ENSG00000165899|ENST00000547103|OTOGL	MULTI-SECPEP	OvCa9_classI_Rep3	3	475.2903747558594	2	476.23947	950.464386	-0.037037	-1.7638E-05	1.2232	0.00058255	1.1862	0.00056491	476.2398731921606	96.183	0.8566	94.355	94.075	94.931	-1.8286					35	16	3	0	0	0	0.028476	1	6377	6377		17.365	0	1	64100	+		9188	21135	7518	7528	10145	10145					-0.012827281514546485
EPWELAALDL	10	Unmodified	_EPWELAALDL_					0	0	0			REV__ENSG00000129646|ENST00000680821|QRICH2	REV__ENSG00000129646|ENST00000680821|QRICH2	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.2846069335938	2	578.797872	1155.58119	2.3207	0.0013432	-0.75086	-0.0004346	1.5698	0.00090859	578.7975411343879	94.163	0.34235	94.163	93.964	94.306	0					11	7	2	0	0	0	0.026681	1	10248	10248		36.447	19.974	1	214870	+		9189	18905	7519	7529	10146	10146					0.009622885492717614
EPWEVPGY	8	Unmodified	_EPWEVPGY_					0	0	0		ENST00000528456.5_1_8:144773829-144775874:+|nuORF	ENST00000528456.5_1_8:144773829-144775874:+|nuORF	ENST00000528456.5_1_8:144773829-144775874:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.7976379394531	2	488.724175	975.433798	-0.6798	-0.00033223	-3.5824	-0.0017508	-4.2622	-0.002083	488.72232531220067	50.797	0.61718	50.797	50.332	50.949	0					16	13	2	0	0	0	0.028476	1	3858	3858		19.36	0	1	129590			9190	13254	7520	7530	10147	10147					-0.05490183264851112
EPWLWPPT	8	Unmodified	_EPWLWPPT_					0	0	0		ENST00000590187.2_1_19:19337677-19349276:+|nuORF;ENSG00000130287|ENST00000252575|NCAN	ENST00000590187.2_1_19:19337677-19349276:+|nuORF	ENST00000590187.2_1_19:19337677-19349276:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.94091796875	2	513.258185	1024.50182	-0.18199	-9.3408E-05	2.4688	0.0012671	2.2868	0.0011737	513.259364421246	60.714	0.5815	60.714	60.277	60.859	0					33	13	3	0	0	0	0.028476	1	5282	5282		50.025	33.551	1	288060			9191	3975	7521	7531	10148	10148					-0.009453136141928553
EPWPSPYIF	9	Unmodified	_EPWPSPYIF_					0	0	0			REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.7899780273438	2	568.276575	1134.5386	1.7077	0.00097046	3.6886	0.0020961	5.3963	0.0030666	568.2766264616424	148.6	0.24637	148.6	148.52	148.77	0					5	4	2	0	0	0	0.027462	1	17391	17391		38.806	3.6541	1	7971.2	+		9192	18180	7522	7532	10149	10149					-0.02329061788304898
EPWRWQRHLYR	11	Unmodified	_EPWRWQRHLYR_					0	0	0			REV__chr6:32847156-32847919|96|73.15|0.0|22.8|-|0|None,TAP1|1	REV__chr6:32847156-32847919|96|73.15|0.0|22.8|-|0|None,TAP1|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.7990112304688	3	542.951531	1625.83276	-0.81511	-0.00044257	-1.4492	-0.00078683	-2.2643	-0.0012294	543.2853033089543	74.676	1.1566	71.445	70.952	72.109	-3.2308					33	23	2	0	0	0	0.026505	1	5889	5889		5.6988	2.847	1	95996	+		9193	16075	7523	7533	10150	10150					0.04487944754168893
EPWRWQRHLYR	11	Unmodified	_EPWRWQRHLYR_					0	0	0			REV__chr6:32847156-32847919|96|73.15|0.0|22.8|-|0|None,TAP1|1	REV__chr6:32847156-32847919|96|73.15|0.0|22.8|-|0|None,TAP1|1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	542.951531	1625.83276	-0.74526	-0.00040464	-1.8279	-0.00099246	-2.5731	-0.0013971	543.2848209692767	73.527	1.2049	71.127	70.585	71.79	-2.3999	-0.18929	-6.1989E-05	NaN	5.6988	47	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50339	+		9194	16075	7523	7533							0.04487944754168893
EPWRWQRHLYR	11	Unmodified	_EPWRWQRHLYR_					0	0	0			REV__chr6:32847156-32847919|96|73.15|0.0|22.8|-|0|None,TAP1|1	REV__chr6:32847156-32847919|96|73.15|0.0|22.8|-|0|None,TAP1|1	MULTI-MATCH	OvCa9_classI_Rep3	3		3	542.951531	1625.83276	-0.030066	-1.6324E-05	-1.9045	-0.0010341	-1.9346	-0.0010504	542.9500853884576	73.865	1.0898	71.378	71.074	72.164	-2.4873	0.06102	-0.00018683	NaN	5.6988	51	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69524	+		9195	16075	7523	7533							0.04487944754168893
EPWSIFFLL	9	Unmodified	_EPWSIFFLL_					0	0	0		MAP3K1|p.G1250Efs*23|1|0.04|ENSG00000095015|chr5:56883608-56883609|-/A|frameshift_variant	MAP3K1|p.G1250Efs*23|1|0.04|ENSG00000095015|chr5:56883608-56883609|-/A|frameshift_variant	MAP3K1|p.G1250Efs*23|1|0.04|ENSG00000095015|chr5:56883608-56883609|-/A|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.7671508789062	2	576.310418	1150.60628	1.3447	0.00077496	-3.3016	-0.0019027	-1.9569	-0.0011278	576.3090057173475	148.69	0.34558	148.69	148.52	148.87	0					11	6	2	0	0	0	0.027462	1	17409	17409		30.504	13.139	1	28540			9196	14817	7524	7534	10151	10151					0.03700388142533484
EPWSPCSAR	9	Unmodified	_EPWSPCSAR_					0	0	0		ENSG00000158859|ENST00000367996|ADAMTS4;nc|ENSG00000158859|O75173-2|ADAMTS4	ENSG00000158859|ENST00000367996|ADAMTS4	ENSG00000158859|ENST00000367996|ADAMTS4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.305419921875	2	516.732009	1031.44946	-0.75928	-0.00039234	1.299	0.00067124	0.53974	0.0002789	516.7326839794881	104.09	0.62999	101.97	101.75	102.38	-2.1192					18	11	2	0	0	0	0.027462	1	9408	9408		44.117	3.3386	1	45214			9197	5976	7525	7535	10152	10152					-0.06500220019461267
EPWSPCSAR	9	Unmodified	_EPWSPCSAR_					0	0	0		ENSG00000158859|ENST00000367996|ADAMTS4;nc|ENSG00000158859|O75173-2|ADAMTS4	ENSG00000158859|ENST00000367996|ADAMTS4	ENSG00000158859|ENST00000367996|ADAMTS4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	516.732009	1031.44946	0.65597	0.00033896	-0.24646	-0.00012736	0.4095	0.0002116	516.7318596071942	103.42	0.68433	101.99	101.66	102.34	-1.4347	0.0099337	-0.0011441	NaN	44.117	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51789			9198	5976	7525	7535							-0.06500220019461267
EPYGRGQDC	9	Unmodified	_EPYGRGQDC_					0	0	0		RGNEF-SEZ6|1|fusion;RGNEF-SEZ6|2|fusion;nc|ENSG00000063015|Q53EL9-2|SEZ6;nc|ENSG00000063015|Q53EL9-3|SEZ6;ENSG00000063015|ENST00000317338|SEZ6	RGNEF-SEZ6|1|fusion	RGNEF-SEZ6|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep3	3	512.254638671875	2	512.711273	1023.40799	-0.90566	-0.00046434	1.7549	0.00089975	0.84923	0.00043541	512.712124184165	86.531	0.95448	84.355	84.03	84.985	-2.1768					43	18	3	0	0	0	0.027453	1	5154	5154		30.318	4.8675	1	130760			9199	1282	7526	7536	10153	10153					-0.1027740077878434
EPYKIHGL	8	Unmodified	_EPYKIHGL_					0	0	0		ENSG00000087116|ENST00000251582|ADAMTS2	ENSG00000087116|ENST00000251582|ADAMTS2	ENSG00000087116|ENST00000251582|ADAMTS2	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.77203369140625	2	478.763635	955.512717	-1.1704	-0.00056035	-3.4392	-0.0016466	-4.6096	-0.0022069	478.76189528856327	55.533	1.3891	52.729	52.282	53.671	-2.804					40	27	2	0	0	0	0.028476	1	3930	3930		29.15	0	1	34162			9200	1764	7527	7537	10154	10154					0.03318088760090632
EPYSFISI	8	Unmodified	_EPYSFISI_					0	0	0			REV__nc|ENSG00000257127|Q5K131|CLLU1	REV__nc|ENSG00000257127|Q5K131|CLLU1	MULTI-SECPEP	OvCa9_classI_Rep3	3	477.7675476074219	2	478.242201	954.469849	-0.34015	-0.00016268	-3.5701	-0.0017074	-3.9102	-0.00187	478.24038859146333	87.255	1.3303	85.078	84.633	85.963	-2.1768					54	25	3	0	0	0	0.028476	1	5328	5328		25.45	7.1258	1	134940	+		9201	29177	7528	7538	10155	10155					-0.009207260879861678
EPYSIDGLK	9	Unmodified	_EPYSIDGLK_					0	0	0			REV__nc|ENSG00000164707|Q9UKG4|SLC13A4	REV__nc|ENSG00000164707|Q9UKG4|SLC13A4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.254638671875	2	511.263665	1020.51278	-1.2244	-0.00062599	1.0571	0.00054047	-0.16727	-8.552E-05	511.26392098563025	87.502	0.60609	84.875	84.499	85.105	-2.6269					16	11	2	0	0	0	0.027462	1	7458	7458		37.812	11.119	1	37316	+		9202	16090	7529	7539	10156	10156					0.0033404396941705272
EPYWIPLI	8	Unmodified	_EPYWIPLI_					0	0	0			REV__nc|ENSG00000100678|P57103-3|SLC8A3	REV__nc|ENSG00000100678|P57103-3|SLC8A3	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.3165893554688	2	515.784036	1029.55352	0.84441	0.00043554	1.1208	0.00057809	1.9652	0.0010136	515.7842374886222	131.49	0.37575	131.49	131.34	131.72	0					12	7	2	0	0	0	0.028476	1	15251	15251		20.482	0	1	45159	+		9203	17444	7530	7540	10157	10157					0.03992430079733822
EQAEILFSL	9	Unmodified	_EQAEILFSL_					0	0	0			REV__tr|A0A553SSL8|A0A553SSL8_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_03375PE=4SV=1	REV__tr|A0A553SSL8|A0A553SSL8_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_03375PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.8036499023438	2	525.279315	1048.54408	-0.35081	-0.00018427	1.2546	0.00065901	0.90378	0.00047474	525.2795686024059	80.295	1.0627	77.955	77.257	78.32	-2.3399					37	20	3	0	0	0	0.027426	1	4409	4409		66.429	0	1	48740	+		9204	30848	7531	7541	10158	10158					0.02174617003538515
EQAEIQRIV	9	Unmodified	_EQAEIQRIV_					0	0	0			REV__nc|ENSG00000115306|Q01082-3|SPTBN1	REV__nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-SECPEP	OvCa9_classI_Rep3	3	544.3009643554688	2	543.301113	1084.58767	-0.92714	-0.00050372	0.30405	0.00016519	-0.62309	-0.00033853	543.3013114182792	83.787	1.3398	81.526	81.017	82.357	-2.261					88	23	5	0	0	0	0.027026	1	4892	4892		85.161	21.627	1	469460	+		9205	18234	7532	7542	10159	10159					0.04876226500641678
EQAEIQRIV	9	Unmodified	_EQAEIQRIV_					0	0	0			REV__nc|ENSG00000115306|Q01082-3|SPTBN1	REV__nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	543.301113	1084.58767	1.3268	0.00072086	0.75413	0.00040972	2.081	0.0011306	543.3014920879288	81.714	0.52327	81.714	81.413	81.937	0	0.0943	0.00042984	NaN	85.161	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	455880	+		9206	18234	7532	7542							0.04876226500641678
EQAIGTVSIP	10	Unmodified	_EQAIGTVSIP_					0	0	0			REV__nc|ENSG00000137312|O75955-2|FLOT1	REV__nc|ENSG00000137312|O75955-2|FLOT1	MULTI-MSMS	OvCa99_classI_Rep5	1	507.77813720703125	2	507.776939	1013.53933	-1.1399	-0.00057883	0.80979	0.00041119	-0.33014	-0.00016764	507.7770855187182	63.89	0.80985	63.89	63.607	64.417	0					47	19	4	0	0	0	0.1722	1	5773	5773		98.629	2.8142	1	3031500	+		9207	28877	7533	7543	10160	10160					0.033097328607595955
EQAQAVPPT	9	Unmodified	_EQAQAVPPT_					0	0	0		ENST00000414286.1_1_9:35753089-35756568:-|nuORF	ENST00000414286.1_1_9:35753089-35756568:-|nuORF	ENST00000414286.1_1_9:35753089-35756568:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.5755920410156	2	470.740357	939.46616	-0.044077	-2.0749E-05	-0.43996	-0.00020711	-0.48404	-0.00022786	470.74030522903314	58.592	0.5691	58.592	58.363	58.932	0					23	13	2	0	0	0	0.027462	1	4973	4973		14.137	0	1	484210			9208	11576	7534	7544	10161	10161					-0.005993958618546458
EQAQKLQEAL	10	Unmodified	_EQAQKLQEAL_					0	0	0			REV__NBPF12|p.E361Q|1|0.04|ENSG00000268043|chr1:146968540-146968540|G/C|missense_variant	REV__NBPF12|p.E361Q|1|0.04|ENSG00000268043|chr1:146968540-146968540|G/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.3024291992188	2	579.311677	1156.6088	-0.7374	-0.00042718	4.2432	0.0024581	3.5058	0.002031	579.3137808359184	53.178	0.21684	53.178	53.043	53.26	0					10	4	3	0	0	0	0.027363	1	4202	4202		85.161	16.315	1	222980	+		9209	28698	7535	7545	10162	10162					0.03676191809518059
EQARKTMPQ	9	Unmodified	_EQARKTMPQ_					0	0	0			REV__tr|A0A553SFQ2|A0A553SFQ2_NIACIasparaginesynthase(glutamine-hydrolyzing)OS=NialliacirculansOX=1397GN=asnBPE=3SV=1	REV__tr|A0A553SFQ2|A0A553SFQ2_NIACIasparaginesynthase(glutamine-hydrolyzing)OS=NialliacirculansOX=1397GN=asnBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8093872070312	2	544.77949	1087.54443	0.11334	6.1747E-05	4.1831	0.0022788	4.2964	0.0023406	545.283012168597	62.379	0.28761	62.379	62.253	62.541	0					9	6	2	0	0	0	0.027411	1	5563	5563		54.776	5.3348	1	109480	+		9210	29604	7536	7546	10163	10163					0.00415713451729971
EQAYRGSHPT	10	Unmodified	_EQAYRGSHPT_					0	0	0		ENSG00000266074|ENST00000675386|BAHCC1;nc|ENSG00000266074|Q9P281|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	MULTI-MSMS	OvCa99_classI_Rep5	1	573.271728515625	2	573.270344	1144.52613	1.7426	0.000999	-0.14948	-8.5692E-05	1.5932	0.00091331	573.2701674967453	117.33	2.4287	117.33	116.95	119.38	0					127	51	5	0	0	0	0.58067	1	13496	13496		44.377	2.9506	1	2599700			9211	9526	7537	7547	10164	10164					-0.04034705198614574
EQCWHPEIK	9	Unmodified	_EQCWHPEIK_					0	0	0			REV__ENST00000531709.6_1_11:62559688-62559799:-|nuORF	REV__ENST00000531709.6_1_11:62559688-62559799:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	585.2744140625	2	585.274041	1168.53353	-0.33406	-0.00019552	-1.7151	-0.0010038	-2.0491	-0.0011993	585.2728744565759	51.185	1.0172	51.185	50.73	51.747	0					71	23	5	0	0	0	0.14855	1	3916	3916		85.161	17.667	1	7655700	+		9212	27219	7538	7548	10165	10165					-0.04399688922558198
EQDNDTEQVF	10	Unmodified	_EQDNDTEQVF_					0	0	0			REV__nc|ENSG00000134324|Q14693-6|LPIN1	REV__nc|ENSG00000134324|Q14693-6|LPIN1	MULTI-MSMS	OvCa9_classI_Rep3	3	612.7555541992188	2	612.754389	1223.49423	3.1312	0.0019187	-2.2516	-0.0013797	0.87961	0.00053898	612.7528585186593	61.298	0.68496	58.229	57.997	58.682	-3.0685					22	18	2	0	0	0	0.73378	1	2135	2135		26.693	2.1737	1	11803	+		9213	19196	7539	7549	10166	10166					-0.10858162463091503
EQDNDTEQVF	10	Unmodified	_EQDNDTEQVF_					0	0	0			REV__nc|ENSG00000134324|Q14693-6|LPIN1	REV__nc|ENSG00000134324|Q14693-6|LPIN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	612.754389	1223.49423	-1.7088	-0.0010471	2.2325	0.001368	0.52374	0.00032092	612.7555524218467	61.325	0.891	58.566	58.147	59.038	-2.7593	0.15375	0.0022733	NaN	26.693	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35458	+		9214	19196	7539	7549							-0.10858162463091503
EQDNDTEQVF	10	Unmodified	_EQDNDTEQVF_					0	0	0			REV__nc|ENSG00000134324|Q14693-6|LPIN1	REV__nc|ENSG00000134324|Q14693-6|LPIN1	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	612.754389	1223.49423	3.1312	0.0019187	-2.2516	-0.0013797	0.87961	0.00053898	612.7528585186593	61.298	0.68496	58.229	57.997	58.682	-3.0685	-0.18259	-0.003222	NaN	26.693	22	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11803	+		9215	19196	7539	7549							-0.10858162463091503
EQDNDTEQVF	10	Unmodified	_EQDNDTEQVF_					0	0	0			REV__nc|ENSG00000134324|Q14693-6|LPIN1	REV__nc|ENSG00000134324|Q14693-6|LPIN1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	612.754389	1223.49423	0.3001	0.00018389	0.13979	8.5656E-05	0.43989	0.00026955	612.7542235462383	61.898	1.1067	58.441	58.103	59.21	-3.4577	0.028839	-0.00029134	NaN	26.693	58	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246210	+		9216	19196	7539	7549							-0.10858162463091503
EQEIPQDL	8	Unmodified	_EQEIPQDL_					0	0	0		ENST00000499568.2_1_11:27698627-27719092:+|nuORF	ENST00000499568.2_1_11:27698627-27719092:+|nuORF	ENST00000499568.2_1_11:27698627-27719092:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	486.2391052246094	2	486.237647	970.460741	-0.24277	-0.00011804	1.0415	0.00050644	0.79877	0.00038839	486.23800180016224	51.296	1.1758	51.296	50.819	51.995	0					66	27	3	0	0	0	0.48084	1	3937	3937		79.451	0	1	1302300			9217	12838	7540	7550	10167	10167					-0.025671194443361856
EQELRRVK	8	Unmodified	_EQELRRVK_					0	0	0		ENST00000517833.1_1_8:144063675-144099792:-|nuORF	ENST00000517833.1_1_8:144063675-144099792:-|nuORF	ENST00000517833.1_1_8:144063675-144099792:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.8080444335938	2	529.309272	1056.60399	0.94529	0.00050035	1.641	0.0008686	2.5863	0.001369	529.309943690893	120.27	0.93727	119.24	118.97	119.91	-1.0271					32	18	4	0	0	0	0.028476	1	9214	9214		49.442	3.4896	1	60564			9218	13065	7541	7551	10168	10168					0.07795352457424087
EQELSDINI	9	Unmodified	_EQELSDINI_					0	0	0			REV__tr|A0A553SJ51|A0A553SJ51_NIACILacIfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_16130PE=4SV=1	REV__tr|A0A553SJ51|A0A553SJ51_NIACILacIfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_16130PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.3172607421875	2	530.761486	1059.50842	0.073904	3.9226E-05	1.5367	0.00081561	1.6106	0.00085483	530.7618987480304	32.577	0.3952	32.577	32.353	32.748	0					19	7	4	0	0	0	0.027137	1	1446	1446		98.629	27.334	1	69353	+		9219	29964	7542	7552	10169	10169					-0.01895465244137995
EQENGTKKL	9	Unmodified	_EQENGTKKL_					0	0	0			REV__nc|ENSG00000117091|P09326-2|CD48	REV__nc|ENSG00000117091|P09326-2|CD48	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2976684570312	2	523.77747	1045.54039	2.2616	0.0011846	3.5459	0.0018573	5.8075	0.0030419	523.7793244902887	116.05	0.81833	116.05	115.86	116.68	0					21	17	2	0	0	0	0.027426	1	13327	13327		47.657	0	1	137200	+		9220	18335	7543	7553	10170	10170					0.019439472296880922
EQENLAECPL	10	Unmodified	_EQENLAECPL_					0	0	0		nc|ENSG00000205022|A6NDY0-2|PABPN1L;nc|ENSG00000205022|A6NDY0-3|PABPN1L;ENSG00000205022|ENST00000419291|PABPN1L;nc|ENSG00000205022|A6NDY0-4|PABPN1L	nc|ENSG00000205022|A6NDY0-2|PABPN1L	nc|ENSG00000205022|A6NDY0-2|PABPN1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.2557983398438	2	573.260796	1144.50704	0.72605	0.00041621	-0.97415	-0.00055844	-0.2481	-0.00014223	573.2597753393577	153.34	0.50278	153.34	153.05	153.55	0					14	9	2	0	0	0	0.026802	1	17973	17973		34.173	0	1	18991			9221	9045	7544	7554	10171	10171					-0.059434226045596006
EQEPTAEQL	9	Unmodified	_EQEPTAEQL_					0	0	0		nc|ENSG00000141522|P52565-2|ARHGDIA;ENSG00000141522|ENST00000269321|ARHGDIA	nc|ENSG00000141522|P52565-2|ARHGDIA	nc|ENSG00000141522|P52565-2|ARHGDIA	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.2962646484375	2	522.745836	1043.47712	-0.91754	-0.00047964	1.8884	0.00098717	0.97089	0.00050753	522.7467461454938	29.268	0.24989	29.268	29.137	29.387	0					8	4	2	0	0	0	0.027418	1	1036	1036		62.107	0	1	46762			9222	4921	7545	7555	10172	10172					-0.04288038278218664
EQEQIEKQI	9	Unmodified	_EQEQIEKQI_					0	0	0			REV__ENSG00000135315|ENST00000403245|CEP162	REV__ENSG00000135315|ENST00000403245|CEP162	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.3567504882812	2	572.79586	1143.57717	-0.10558	-6.0474E-05	2.1889	0.0012538	2.0833	0.0011933	572.797674853299	32.997	0.93254	32.997	32.353	33.285	0					42	18	5	0	0	0	0.027402	1	1427	1427		66.429	11.653	1	194570	+		9223	19272	7546	7556	10173	10173					0.011121990555693628
EQERLHREMLR	11	Unmodified	_EQERLHREMLR_					0	0	0		nc|ENSG00000178662|Q8WYN3-2|CSRNP3;ENSG00000178662|ENST00000651982|CSRNP3	nc|ENSG00000178662|Q8WYN3-2|CSRNP3	nc|ENSG00000178662|Q8WYN3-2|CSRNP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.2619323730469	3	499.596536	1495.76778	2.2391	0.0011187	-0.68457	-0.00034201	1.5545	0.00077665	499.59615766322275	86.052	0.68044	86.052	85.83	86.511	0					27	16	2	0	0	0	0.026174	1	9091	9091		12.433	3.6335	1	767330			9224	7768	7547	7557	10174	10174					0.03972582166011307
EQERLLGL	8	Unmodified	_EQERLLGL_					0	0	0		ENST00000486107.5_1_3:49946616-49946880:-|nuORF;nc|ENSG00000164077|Q86VX9-2|MON1A;nc|ENSG00000164077|Q86VX9-4|MON1A;ENSG00000164077|ENST00000296473|MON1A;nc|ENSG00000164077|Q86VX9|MON1A	ENST00000486107.5_1_3:49946616-49946880:-|nuORF	ENST00000486107.5_1_3:49946616-49946880:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	479.2721252441406	2	479.271824	956.529095	-0.87159	-0.00041773	0.88806	0.00042562	0.016474	7.8955E-06	479.2720728270684	69.85	0.73617	69.85	69.591	70.328	0					44	17	4	0	0	0	0.59148	1	6654	6654		65.803	0	1	4739600			9225	6402	7548	7558	10175	10175					0.04909169926202139
EQEVVEGMDIS	11	Unmodified	_EQEVVEGMDIS_					0	0	0		ZMYND8-EYA2|1|fusion;ZMYND8-EYA2|3|fusion;ZMYND8-EYA2|7|fusion;ZMYND8-EYA2|5|fusion;ZMYND8-EYA2|8|fusion;ZMYND8-EYA2|2|fusion;ZMYND8-EYA2|4|fusion;nc|ENSG00000101040|Q9ULU4-19|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-22|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;nc|ENSG00000101040|Q9ULU4-8|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-17|ZMYND8;ZMYND8-EYA2|6|fusion	ZMYND8-EYA2|1|fusion	ZMYND8-EYA2|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	617.3099975585938	2	618.276643	1234.53873	1.6716	0.0010335	-3.0902	-0.0019106	-1.4186	-0.00087709	618.2737377717	120.16	0.53087	120.16	119.74	120.27	0					16	11	2	0	0	0	0.025861	1	13766	13766		23.523	0	1	267460			9226	36318	7549	7559	10176	10176					-0.06915474641232322
EQFAWRHFYWY	11	Unmodified	_EQFAWRHFYWY_					0	0	0		ENST00000477729.1_1_15:60696796-60696997:+|nuORF;ENST00000480942.1_1_6:34392413-34392935:-|nuORF;ENST00000439253.1_1_9:90631298-90631598:+|nuORF;ENST00000408001.1_1_6:34712123-34712447:+|nuORF;chr6:34425221-34425583|429|46.7|0.0|22.16|-|ENST00000494077|RPS10-NUDT3,RPS10;ENSG00000124614|ENST00000648437|RPS10;nc|ENSG00000101278|Q9NQ39|RPS10P5;ENST00000440748.1_1_7:37415149-37415623:+|nuORF	ENST00000477729.1_1_15:60696796-60696997:+|nuORF	ENST00000477729.1_1_15:60696796-60696997:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.298583984375	3	544.917604	1631.73098	-0.0050375	-2.745E-06	4.4241	0.0024108	4.4191	0.002408	544.9198687961431	31.484	0.29712	31.484	31.311	31.608	0					9	5	2	0	0	0	0.026525	1	1302	1302		3.6191	0	1	101470			9227	516	7550	7560	10177	10177					-0.059613463882442375
EQFHGEKP	8	Unmodified	_EQFHGEKP_					0	0	0			REV__BRCA2|p.L3172Afs*44|1|0.79|ENSG00000139618|chr13:32396908-32396911|TACT/-|frameshift_variant	REV__BRCA2|p.L3172Afs*44|1|0.79|ENSG00000139618|chr13:32396908-32396911|TACT/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.2607421875	2	486.232699	970.450845	-0.55579	-0.00027024	-2.6608	-0.0012938	-3.2166	-0.001564	486.23127402748133	38.451	0.49812	38.451	38.207	38.705	0					16	10	2	0	0	0	0.028476	1	2180	2180		27.882	19.06	1	123290	+		9228	15710	7551	7561	10178	10178					-0.03556262659037657
EQFQHAIEK	9	Unmodified	_EQFQHAIEK_					0	0	0		nc|ENSG00000038382|O75962-2|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-5|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENST00000515144.5_1_5:14293150-14488426:+|nuORF	nc|ENSG00000038382|O75962-2|TRIO	nc|ENSG00000038382|O75962-2|TRIO	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.2813720703125	2	565.285463	1128.55637	0.18346	0.00010371	-0.24424	-0.00013806	-0.060778	-3.4357E-05	565.2851929998633	63.669	0.27665	63.669	63.496	63.773	0					12	6	2	0	0	0	0.027062	1	5725	5725		122.18	17.429	1	322820			9229	1098	7552	7562	10179	10179					-0.002763465334282955
EQFRAGEL	8	Unmodified	_EQFRAGEL_					0	0	0			REV__ENSG00000142207|ENST00000382751|URB1	REV__ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	OvCa99_classI_Rep5	1	475.2412109375	2	475.240524	948.466495	2.5337	0.0012041	-1.2192	-0.00057942	1.3145	0.00062472	475.2396430833918	75.098	0.76189	75.098	74.761	75.523	0					25	18	2	0	0	0	0.62474	1	7446	7446		58.782	6.4828	1	1028900	+		9230	19776	7553	7563	10180	10180					-0.009799761420026698
EQGGAQWPVL	10	Unmodified	_EQGGAQWPVL_					0	0	0			REV__ENST00000553248.5_1_12:113860215-113866971:+|nuORF	REV__ENST00000553248.5_1_12:113860215-113866971:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	542.77734375	2	542.774731	1083.53491	1.4681	0.00079683	0.921	0.0004999	2.3891	0.0012967	542.7751106699313	79.339	0.34463	79.339	79.24	79.585	0					16	8	3	0	0	0	0.37436	1	8100	8100		71.877	7.6702	1	1396300	+		9231	25428	7554	7564	10181	10181					-0.0035173156215932977
EQGGAQWPVL	10	Unmodified	_EQGGAQWPVL_					0	0	0			REV__ENST00000553248.5_1_12:113860215-113866971:+|nuORF	REV__ENST00000553248.5_1_12:113860215-113866971:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	542.774731	1083.53491	1.4681	0.00079683	0.921	0.0004999	2.3891	0.0012967	542.7751106699313	79.339	0.34463	79.339	79.24	79.585	0	0	0	NaN	71.877	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1396300	+		9232	25428	7554	7564							-0.0035173156215932977
EQGKAKKPL	9	Unmodified	_EQGKAKKPL_					0	0	0			REV__nc|ENSG00000115109|Q9HCM4-2|EPB41L5	REV__nc|ENSG00000115109|Q9HCM4-2|EPB41L5	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.2619323730469	2	499.803291	997.59203	2.0632	0.0010312	0.51207	0.00025593	2.5752	0.0012871	499.80351565010415	85.91	0.64764	85.91	85.663	86.311	0					24	15	2	0	0	0	0.027462	1	9091	9091		30.318	4.7437	1	452940	+		9233	18218	7555	7565	10182	10182					0.09313735714226823
EQGPLQILV	9	Unmodified	_EQGPLQILV_					0	0	0			REV__ENSG00000215421|ENST00000299687|ZNF407	REV__ENSG00000215421|ENST00000299687|ZNF407	MULTI-MSMS	OvCa9_classI_Rep3	3	499.7881164550781	2	498.78985	995.565146	0.032773	1.6347E-05	-2.6432	-0.0013184	-2.6105	-0.0013021	498.78956440605833	118.98	1.288	117.95	117.58	118.87	-1.0271					73	25	4	0	0	0	0.46377	1	9002	9002		45.952	9.5052	1	100180	+		9234	23316	7556	7566	10183	10183					0.06718627103055042
EQGPLTLQTL	10	Unmodified	_EQGPLTLQTL_					0	0	0		ENSG00000187105|ENST00000553558|HEATR4	ENSG00000187105|ENST00000553558|HEATR4	ENSG00000187105|ENST00000553558|HEATR4	MULTI-MSMS	OvCa9_classI_Rep2	2	550.302490234375	2	550.303321	1098.59209	-1.3686	-0.00075312	0.97734	0.00053783	-0.39121	-0.00021529	550.3038190242007	62.985	2.202	60.24	59.695	61.897	-2.7444					104	41	4	0	0	0	0.26424	1	4731	4731		85.161	2.9203	1	3245100			9235	8386	7557	7567	10184	10184					0.04673690923573304
EQGPLTLQTL	10	Unmodified	_EQGPLTLQTL_					0	0	0		ENSG00000187105|ENST00000553558|HEATR4	ENSG00000187105|ENST00000553558|HEATR4	ENSG00000187105|ENST00000553558|HEATR4	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.3043212890625	2	550.303321	1098.59209	-0.36306	-0.00019979	-0.80483	-0.0004429	-1.1679	-0.00064269	550.3029145148993	63.654	2.5638	60.179	59.625	62.189	-3.475					135	52	5	0	0	0	0.044571	1	4507	4507		131.03	6.9513	1	19032000			9236	8386	7557	7567	10185	10185					0.04673690923573304
EQGRVPSLE	9	Unmodified	_EQGRVPSLE_					0	0	0			REV__ENST00000534268.5_1_15:79237035-79237179:-|nuORF	REV__ENST00000534268.5_1_15:79237035-79237179:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	507.7629699707031	2	507.764363	1013.51417	-0.98874	-0.00050205	-1.5604	-0.00079233	-2.5492	-0.0012944	507.76348195987015	116.06	1.5323	115.02	114.7	116.23	-1.0414					85	30	4	0	0	0	0.5811	1	8653	8653		34.173	0.65696	1	238760	+		9237	27265	7558	7568	10186	10186					0.007956780581935163
EQGWKKLAD	9	Unmodified	_EQGWKKLAD_					0	0	0			REV__tr|A0A553SG41|A0A553SG41_NIACIGlutamate-1-semialdehyde2,1-aminomutaseOS=NialliacirculansOX=1397GN=hemLPE=3SV=1	REV__tr|A0A553SG41|A0A553SG41_NIACIGlutamate-1-semialdehyde2,1-aminomutaseOS=NialliacirculansOX=1397GN=hemLPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	537.7835083007812	2	537.782556	1073.55056	-0.37169	-0.00019989	-0.40307	-0.00021676	-0.77475	-0.00041665	537.7823334162829	47.961	1.6489	47.961	47.638	49.287	0					102	36	6	0	0	0	0.14998	1	3522	3522		84.916	4.4609	1	26152000	+		9238	29659	7559	7569	10187	10187					0.016725549548937124
EQHHDLLF	8	Unmodified	_EQHHDLLF_					0	0	0			REV__ENST00000421655.1_1_9:108522415-108523033:+|nuORF	REV__ENST00000421655.1_1_9:108522415-108523033:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.7781982421875	2	519.753798	1037.49304	-0.6243	-0.00032448	-3.6234	-0.0018833	-4.2477	-0.0022077	519.7517762558263	62.643	1.1175	59.185	58.864	59.981	-3.4577					44	22	3	0	0	0	0.028476	1	4341	4341		32.812	2.4947	1	229940	+		9239	25607	7560	7570	10188	10188					-0.024202872506748463
EQHHDLLF	8	Unmodified	_EQHHDLLF_					0	0	0			REV__ENST00000421655.1_1_9:108522415-108523033:+|nuORF	REV__ENST00000421655.1_1_9:108522415-108523033:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	519.753798	1037.49304	-1.278	-0.00066424	-3.0711	-0.0015962	-4.3491	-0.0022604	519.7519424812801	62.006	1.1075	59.247	58.777	59.884	-2.7593	0.0309	0.00034558	NaN	32.812	37	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46607	+		9240	25607	7560	7570							-0.024202872506748463
EQIDILPPIP	10	Unmodified	_EQIDILPPIP_					0	0	0			REV__ENST00000311597.9_1_22:50523869-50523992:-|nuORF	REV__ENST00000311597.9_1_22:50523869-50523992:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.806640625	2	567.823889	1133.63323	0.47543	0.00026996	-4.3977	-0.0024971	-3.9223	-0.0022272	567.8215374364498	69.357	0.2501	66.543	66.362	66.612	-2.8144					8	4	3	0	0	0	0.026939	1	3090	3090		17.365	0	1	11555	+		9241	24353	7561	7571	10189	10189					0.07175451963053092
EQIHLISVVI	10	Unmodified	_EQIHLISVVI_					0	0	0		tr|A0A553SI82|A0A553SI82_NIACIATPsynthasesubunitIOS=NialliacirculansOX=1397GN=CEQ21_14355PE=4SV=1	tr|A0A553SI82|A0A553SI82_NIACIATPsynthasesubunitIOS=NialliacirculansOX=1397GN=CEQ21_14355PE=4SV=1	tr|A0A553SI82|A0A553SI82_NIACIATPsynthasesubunitIOS=NialliacirculansOX=1397GN=CEQ21_14355PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.843017578125	2	575.845156	1149.67576	-2.8608	-0.0016474	-0.58729	-0.00033819	-3.4481	-0.0019856	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.67931	1	14618	14618		32.812	0	1	356230			9242	33354	7562	7572	10190	10190					0.10690847091314026
EQIIKGSKDV	10	Unmodified	_EQIIKGSKDV_					0	0	0		nc|ENSG00000044459|Q9NXG0|CNTLN;ENSG00000044459|ENST00000380647|CNTLN;CNTLN|p.K1206Sfs*15|1|0.3|ENSG00000044459|chr9:17466063-17466063|A/-|frameshift_variant	nc|ENSG00000044459|Q9NXG0|CNTLN	nc|ENSG00000044459|Q9NXG0|CNTLN	MULTI-MSMS	OvCa9_classI_Rep2	2	558.8173217773438	2	558.816596	1115.61864	0.30325	0.00016946	0.12276	6.86E-05	0.42601	0.00023806	558.8161111583237	45.682	2.04	42.972	42.697	44.737	-2.7097					67	40	2	0	0	0	0.18931	1	2691	2691		96.034	10.873	1	1772600			9243	1133	7563	7573	10191	10191					0.06545379814906482
EQIKALTER	9	Unmodified	_EQIKALTER_					0	0	0			REV__nc|ENSG00000138778|Q02224-3|CENPE	REV__nc|ENSG00000138778|Q02224-3|CENPE	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.7882080078125	2	544.308938	1086.60332	-0.73494	-0.00040004	0.089356	4.8637E-05	-0.64559	-0.0003514	544.3089486381473	28.713	0.20052	28.713	28.588	28.789	0					6	3	2	0	0	0	0.027462	1	953	953		19.997	0	1	17989	+		9244	19572	7564	7574	10192	10192					0.0634851301767867
EQIKFDKYIL	10	Unmodified	_EQIKFDKYIL_					0	0	0		nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1;nc|ENSG00000116127|Q8TCU4-3|ALMS1;CCT7-ALMS1|1|fusion	nc|ENSG00000116127|Q8TCU4-2|ALMS1	nc|ENSG00000116127|Q8TCU4-2|ALMS1	MULTI-MSMS	OvCa99_classI_Rep5	1	648.8681640625	2	648.863546	1295.71254	1.3161	0.00085396	0.20638	0.00013391	1.5225	0.00098787	648.863683369547	131.33	0.51816	131.33	131.1	131.62	0					17	10	3	0	0	0	0.75313	1	15252	15252		24.519	0	1	170700			9245	3155	7565	7575	10193	10193					0.07651098917199306
EQIKFVYEL	9	Unmodified	_EQIKFVYEL_					0	0	0			REV__ENSG00000165895|ENST00000298815|ARHGAP42	REV__ENSG00000165895|ENST00000298815|ARHGAP42	MULTI-MSMS	OvCa99_classI_Rep5	1	584.8151245117188	2	584.816064	1167.61758	0.65363	0.00038226	0.76698	0.00044854	1.4206	0.0008308	584.8164607572306	124.02	0.58924	124.02	123.79	124.37	0					27	12	3	0	0	0	0.2422	1	14312	14312		69.628	3.1983	1	480310	+		9246	21133	7566	7576	10194	10194					0.04047165445990686
EQIKLLGLLPD	11	Unmodified	_EQIKLLGLLPD_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	OvCa9_classI_Rep3	3	619.867919921875	2	619.871371	1237.72819	-2.7857	-0.0017268	-0.3761	-0.00023313	-3.1618	-0.0019599	619.8709153162803	147.4	3.9416	146.45	144.36	148.3	-0.9512					241	78	4	0	0	0	0.70761	1	12326	12326		27.047	2.5281	1	225770	+		9247	19832	7567	7577	10195	10195					0.11883385434225602
EQIPILPEK	9	Unmodified	_EQIPILPEK_					0	0	0			REV__nc|ENSG00000135636|O75923-3|DYSF	REV__nc|ENSG00000135636|O75923-3|DYSF	MULTI-MSMS	OvCa99_classI_Rep5	1	533.8094482421875	2	533.810782	1065.60701	0.021936	1.1709E-05	-3.3778	-0.0018031	-3.3559	-0.0017914	533.8090148064657	30.955	2.065	30.955	30.731	32.796	0					81	41	5	0	0	0	0.13504	1	1246	1246		87.696	2.5356	1	8246500	+		9248	28870	7568	7578	10196	10196					0.07683182791561194
EQIRLAQMI	9	Unmodified	_EQIRLAQMI_					0	0	0		nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	MSMS	OvCa99_classI_Rep5	1	551.3092651367188	2	551.307884	1100.60121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.22	1	104.22	103.72	104.72	0								0	0	0	0.016902	1	11674	11674		134.81	5.1281	1				9249	5073	7569	7579	10197	10197					0.05493761008256115
EQIVHYLP	8	Unmodified	_EQIVHYLP_					0	0	0		tr|A0A7D6VTE9|A0A7D6VTE9_9CLOTATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10480PE=4SV=1	tr|A0A7D6VTE9|A0A7D6VTE9_9CLOTATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10480PE=4SV=1	tr|A0A7D6VTE9|A0A7D6VTE9_9CLOTATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10480PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	499.7651062011719	2	499.768917	997.523281	-4.5275	-0.0022627	-1.7675	-0.00088335	-6.295	-0.003146	499.7678759368207	155.39	0.67654	155.16	154.97	155.64	-0.22697					27	22	2	0	0	0	0.75661	1	15851	15851		19.36	1.0356	1	14331			9250	35109	7570	7580	10198	10198					0.02442071414509428
EQKAFLHTK	9	Unmodified	_EQKAFLHTK_					0	0	0			REV__nc|ENSG00000101745|Q6UB98-2|ANKRD12	REV__nc|ENSG00000101745|Q6UB98-2|ANKRD12	MULTI-SECPEP	OvCa9_classI_Rep3	3	551.83349609375	2	551.306198	1100.59784	-1.359	-0.0007492	0.54209	0.00029886	-0.81686	-0.00045034	551.3064745210171	101.01	0.983	99.403	99.094	100.08	-1.6053					29	18	3	0	0	0	0.02744	1	6937	6937		62.107	9.1707	1	124560	+		9251	17515	7571	7581	10199	10199					0.05156834225863349
EQKDELQL	8	Unmodified	_EQKDELQL_					0	0	0			REV__ENSG00000163885|ENST00000352312|CFAP100	REV__ENSG00000163885|ENST00000352312|CFAP100	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.2696228027344	2	501.758746	1001.50294	-1.382	-0.00069342	-1.3675	-0.00068615	-2.7495	-0.0013796	501.7580347788958	92.715	1.1037	90.208	89.908	91.012	-2.5072					30	21	3	0	0	0	0.028476	1	8091	8091		37.812	4.9991	1	71754	+		9252	20907	7572	7582	10200	10200					0.0022485596406340846
EQKKEIVN	8	Unmodified	_EQKKEIVN_					0	0	0		PRAMEF4|p.T260N|1|0.06|ENSG00000243073|chr1:12881950-12881950|G/T|missense_variant	PRAMEF4|p.T260N|1|0.06|ENSG00000243073|chr1:12881950-12881950|G/T|missense_variant	PRAMEF4|p.T260N|1|0.06|ENSG00000243073|chr1:12881950-12881950|G/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.7991943359375	2	494.277106	986.53966	0.7193	0.00035553	1.8194	0.00089928	2.5387	0.0012548	494.27789555986686	81.032	0.58549	81.032	80.744	81.329	0					28	13	3	0	0	0	0.028476	1	8338	8338		87.754	10.98	1	3476500			9253	15519	7573	7583	10201	10201					0.04585152580614249
EQKLQDLLD	9	Unmodified	_EQKLQDLLD_					0	0	0			REV__nc|ENSG00000186416|O15226|NKRF	REV__nc|ENSG00000186416|O15226|NKRF	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.81494140625	2	551.292953	1100.57135	1.8735	0.0010328	1.4939	0.0008236	3.3674	0.0018564	551.2933036554448	82.194	0.82809	82.194	81.694	82.522	0					38	19	3	0	0	0	0.027462	1	8503	8503		37.812	0	1	1077500	+		9254	22581	7574	7584	10202	10202					0.025091005438980574
EQKRPHKNL	9	Unmodified	_EQKRPHKNL_					0	0	0		L1PA11_dup257|chr1:220255199-220257096:+|1.2080698086480397|0.4810012897383803|1.33|429.0|1|1|sense	L1PA11_dup257|chr1:220255199-220257096:+|1.2080698086480397|0.4810012897383803|1.33|429.0|1|1|sense	L1PA11_dup257|chr1:220255199-220257096:+|1.2080698086480397|0.4810012897383803|1.33|429.0|1|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.347900390625	2	575.327996	1148.64144	-0.61158	-0.00035186	-3.402	-0.0019573	-4.0136	-0.0023091	575.3259317500708	53.022	1.2114	53.022	52.522	53.733	0					43	27	2	0	0	0	0.027425	1	4217	4217		63.534	0	1	159690			9255	14645	7575	7585	10203	10203					0.07306443723041411
EQKRPKTL	8	Unmodified	_EQKRPKTL_					0	0	0		ENST00000498426.5_1_1:196227442-196227487:-|nuORF	ENST00000498426.5_1_1:196227442-196227487:-|nuORF	ENST00000498426.5_1_1:196227442-196227487:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	500.3006896972656	2	500.300916	998.587279	0.39193	0.00019608	2.9644	0.0014831	3.3563	0.0016792	500.3004866188761	30.187	0.78995	27.477	27.261	28.051	-2.7097					46	15	5	0	0	0	0.73938	1	797	797		31.955	5.1588	1	66893			9256	12823	7576	7586	10204	10204					0.08792851571479332
EQKRRRRKEL	10	Unmodified	_EQKRRRRKEL_					0	0	0			REV__ENST00000468290.1_1_9:136198707-136199617:-|nuORF	REV__ENST00000468290.1_1_9:136198707-136199617:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	466.9513854980469	3	466.951531	1397.83276	1.5916	0.00074322	-0.097446	-4.5502E-05	1.4942	0.00069772	466.9514863874782	62.714	2.1935	59.681	59.362	61.555	-3.0339					129	43	5	0	0	0	0.6898	2	2397	2369;2397		31.634	3.0575	1	504980	+		9257	20098	7577	7587	10205;10206	10206					0.14975944754178272
EQKVASFP	8	Unmodified	_EQKVASFP_					0	0	0			REV__nc|ENSG00000180376|A2RUB6-3|CCDC66	REV__nc|ENSG00000180376|A2RUB6-3|CCDC66	MSMS	OvCa99_classI_Rep5	1	453.2415466308594	2	453.239993	904.465432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.655	1	58.655	58.155	59.155	0								0	0	0	0.30129	1	4998	4998		82.241	2.5279	1		+		9258	22171	7578	7588	10207	10207					0.00937809489096253
EQKWINVE	8	Unmodified	_EQKWINVE_					0	0	0		ENST00000360803.8_1_10:1064886-1064934:+|nuORF	ENST00000360803.8_1_10:1064886-1064934:+|nuORF	ENST00000360803.8_1_10:1064886-1064934:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.8058471679688	2	523.269281	1044.52401	-0.84628	-0.00044283	-0.095828	-5.0144E-05	-0.94211	-0.00049298	523.2695903715737	61.295	0.63227	61.295	61.071	61.704	0					42	14	5	0	0	0	0.028476	1	5432	5432		53.351	0	1	952670			9259	10782	7579	7589	10208	10208					0.0035286606357658457
EQLARVMEKI	10	Unmodified	_EQLARVMEKI_					0	0	0		tr|A0A553SMN7|A0A553SMN7_NIACIDNAhelicaseOS=NialliacirculansOX=1397GN=CEQ21_22965PE=4SV=1	tr|A0A553SMN7|A0A553SMN7_NIACIDNAhelicaseOS=NialliacirculansOX=1397GN=CEQ21_22965PE=4SV=1	tr|A0A553SMN7|A0A553SMN7_NIACIDNAhelicaseOS=NialliacirculansOX=1397GN=CEQ21_22965PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	608.8355712890625	2	608.839548	1215.66454	-2.9862	-0.0018181	-1.5855	-0.00096534	-4.5717	-0.0027834	608.8384409530391	152.11	1.417	150.68	150.29	151.71	-1.435					87	30	4	0	0	0	0.71173	1	15107	15107		29.17	1.2878	1	285950			9260	33856	7580	7590	10209	10209					0.06533701725493302
EQLASHVVP	9	Unmodified	_EQLASHVVP_					0	0	0			REV__ENST00000502512.1_3_1:2441299-2442819:-|nuORF	REV__ENST00000502512.1_3_1:2441299-2442819:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.30645751953125	2	490.263999	978.513445	2.0796	0.0010195	0.077151	3.7825E-05	2.1567	0.0010574	490.2639009383113	79.987	0.6949	79.987	79.704	80.399	0					28	16	3	0	0	0	0.027462	1	8179	8179		55.504	21.332	1	523810	+		9261	20539	7581	7591	10210	10210					0.02332883409144415
EQLASHVVP	9	Unmodified	_EQLASHVVP_					0	0	0			REV__ENST00000502512.1_3_1:2441299-2442819:-|nuORF	REV__ENST00000502512.1_3_1:2441299-2442819:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	490.263999	978.513445	-1.2349	-0.00060544	-5.1613	-0.0025304	-6.3963	-0.0031359	490.2617679242085	82.288	0.45209	79.992	79.735	80.187	-2.2963	-0.029714	-0.003948	NaN	55.504	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33886	+		9262	20539	7581	7591							0.02332883409144415
EQLASHVVP	9	Unmodified	_EQLASHVVP_					0	0	0			REV__ENST00000502512.1_3_1:2441299-2442819:-|nuORF	REV__ENST00000502512.1_3_1:2441299-2442819:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	490.263999	978.513445	-0.19358	-9.4908E-05	-5.3688	-0.0026321	-5.5624	-0.002727	490.2615806177927	82.768	0.53664	80.085	79.832	80.368	-2.683	0.06396	-0.0041514	NaN	55.504	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32421	+		9263	20539	7581	7591							0.02332883409144415
EQLCIHPE	8	Unmodified	_EQLCIHPE_					0	0	0		nc|ENSG00000258366|Q9NZ71|RTEL1;nc|ENSG00000258366|Q9NZ71-7|RTEL1;ENSG00000258366|ENST00000360203|RTEL1;nc|ENSG00000258366|Q9NZ71-2|RTEL1;ENST00000504490.2_1_4:113277498-113277816:+|nuORF;nc|ENSG00000258366|Q9NZ71-8|RTEL1;nc|ENSG00000258366|Q9NZ71-4|RTEL1	nc|ENSG00000258366|Q9NZ71|RTEL1	nc|ENSG00000258366|Q9NZ71|RTEL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.7620849609375	2	484.728935	967.443317	-0.48566	-0.00023542	-3.0978	-0.0015016	-3.5834	-0.001737	484.72708589164716	55.283	0.45566	55.283	55.064	55.52	0					17	10	2	0	0	0	0.028476	1	4546	4546		23.042	0	1	251900			9264	9478	7582	7592	10211	10211					-0.04170738250979866
EQLKKKAPF	9	Unmodified	_EQLKKKAPF_					0	0	0			REV__ENSG00000155363|ENST00000369645|MOV10	REV__ENSG00000155363|ENST00000369645|MOV10	MULTI-MSMS	OvCa9_classI_Rep2	2	544.8240356445312	2	544.826766	1087.63898	-4.363	-0.0023771	0.3268	0.00017805	-4.0362	-0.002199	544.82700234604	154.97	0.71278	154.74	154.48	155.19	-0.22696					46	16	4	0	0	0	0.69123	1	15777	15777		20.947	0.4651	1	60082	+		9265	20422	7583	7593	10212	10212					0.09866595265361866
EQLLGMQQQQ	10	Unmodified	_EQLLGMQQQQ_					0	0	0		ENST00000438101.1_1_X:49432665-49432995:-|nuORF	ENST00000438101.1_1_X:49432665-49432995:-|nuORF	ENST00000438101.1_1_X:49432665-49432995:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.23138427734375	3	401.53265	1201.57612	1.484	0.00059588	0.52838	0.00021216	2.0124	0.00080805	401.53277384048965	32.627	0.34143	32.627	32.503	32.844	0					9	6	2	0	0	0	0.027754	1	1458	1458		109.44	32.121	1	44258			9266	11894	7584	7594	10213	10213					-0.01660338584974852
EQLLQTVTL	9	Unmodified	_EQLLQTVTL_					0	0	0			REV__ENSG00000138449|ENST00000261024|SLC40A1	REV__ENSG00000138449|ENST00000261024|SLC40A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.7822265625	2	522.800414	1043.58628	-1.119	-0.00058504	2.423	0.0012667	1.304	0.00068171	522.802220621125	59.285	0.18569	59.285	59.228	59.414	0					6	4	2	0	0	0	0.027441	1	5105	5105		32.812	0	1	249110	+		9267	19541	7585	7595	10214	10214					0.06622592411918049
EQLLRQLLTL	10	Unmodified	_EQLLRQLLTL_					0	0	0			REV__nc|ENSG00000092036|Q9H6D7-2|HAUS4	REV__nc|ENSG00000092036|Q9H6D7-2|HAUS4	MULTI-MSMS	OvCa99_classI_Rep5	1	409.5863342285156	3	409.587084	1225.73942	0.13092	5.3623E-05	-2.0975	-0.00085911	-1.9666	-0.00080548	409.58613363349775	34.327	0.56552	34.327	34.113	34.679	0					32	11	4	0	0	0	0.61634	1	1652	1652		40.058	2.2467	1	366880	+		9268	17260	7586	7596	10215	10215					0.13558207528376442
EQLLTLRTN	9	Unmodified	_EQLLTLRTN_					0	0	0			REV__nc|ENSG00000005436|P16383-2|GCFC2	REV__nc|ENSG00000005436|P16383-2|GCFC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7970581054688	2	544.308938	1086.60332	-0.083712	-4.5565E-05	4.2476	0.002312	4.1638	0.0022664	544.311051953139	68.975	0.77797	68.975	68.774	69.552	0					37	18	3	0	0	0	0.027459	1	6571	6571		44.377	0	1	1060700	+		9269	16401	7587	7597	10216	10216					0.06348513017724144
EQLNEIQLKF	10	Unmodified	_EQLNEIQLKF_					0	0	0		tr|A0A7D6VXM3|A0A7D6VXM3_9CLOTAlgX/AlgJSGNHhydrolase-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09255PE=4SV=1	tr|A0A7D6VXM3|A0A7D6VXM3_9CLOTAlgX/AlgJSGNHhydrolase-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09255PE=4SV=1	tr|A0A7D6VXM3|A0A7D6VXM3_9CLOTAlgX/AlgJSGNHhydrolase-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09255PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	421.2318420410156	3	421.231077	1260.6714	-0.28888	-0.00012169	1.0519	0.00044307	0.76297	0.00032139	421.2313880910111	24.891	3.0554	24.891	24.436	27.491	0					121	60	4	0	0	0	0.762	1	541	541		17.167	0	1	303820			9270	35289	7588	7598	10217	10217					0.0514933787769678
EQLNRFAGF	9	Unmodified	_EQLNRFAGF_					0	0	0		ENST00000508781.5_1_5:110073914-110092698:+|nuORF;nc|ENSG00000164209|Q96AG3-3|SLC25A46;ENSG00000164209|ENST00000355943|SLC25A46	ENST00000508781.5_1_5:110073914-110092698:+|nuORF	ENST00000508781.5_1_5:110073914-110092698:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.8570556640625	2	541.274898	1080.53524	-0.45163	-0.00024446	1.3144	0.00071147	0.86281	0.00046702	541.2757806501974	48.271	0.47038	48.271	48.16	48.63	0					12	10	2	0	0	0	0.027343	1	3538	3538		68.787	0	1	288610			9271	6434	7589	7599	10218	10218					-0.001803118423140404
EQLNRPSVPGK	11	Unmodified	_EQLNRPSVPGK_					0	0	0			REV__nc|ENSG00000219481|Q3BBV0|NBPF1;REV__ENSG00000270629|ENST00000619423|NBPF14	REV__nc|ENSG00000219481|Q3BBV0|NBPF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	409.2424621582031	3	408.894688	1223.66223	1.9625	0.00080245	-1.5662	-0.00064041	0.39629	0.00016204	408.89409043570186	36.263	0.45007	33.414	33.288	33.739	-2.849					17	8	3	0	0	0	0.025904	1	1228	1228		24.276	10.768	1	29666	+		9272	23333;23605	7590	7600	10219	10219					0.05934989312027028
EQLNRPSVPGK	11	Unmodified	_EQLNRPSVPGK_					0	0	0			REV__nc|ENSG00000219481|Q3BBV0|NBPF1;REV__ENSG00000270629|ENST00000619423|NBPF14	REV__nc|ENSG00000219481|Q3BBV0|NBPF1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	408.894688	1223.66223	-1.5368	-0.00062841	0.2186	8.9384E-05	-1.3182	-0.00053902	408.89477411008806	36.332	0.29612	33.622	33.499	33.795	-2.7097	0.1042	0.0019276	NaN	24.276	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7046.7	+		9273	23333;23605	7590	7600							0.05934989312027028
EQLPDDAIER	10	Unmodified	_EQLPDDAIER_					0	0	0			REV__nc|ENSG00000132016|Q0VDD7-2|BRME1	REV__nc|ENSG00000132016|Q0VDD7-2|BRME1	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.25537109375	2	593.290942	1184.56733	1.1707	0.00069455	3.1693	0.0018803	4.34	0.0025749	593.793807307977	115.06	0.28182	115.06	114.88	115.16	0					7	5	2	0	0	0	0.026714	1	13138	13138		42.864	0	1	28928	+		9274	19048	7591	7601	10220	10220					-0.017569889498190605
EQLQSLNLV	9	Unmodified	_EQLQSLNLV_					0	0	0			REV__TRIM69|p.E237V|1|0.05|ENSG00000185880|chr15:44758751-44758751|A/T|missense_variant	REV__TRIM69|p.E237V|1|0.05|ENSG00000185880|chr15:44758751-44758751|A/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.2674560546875	2	522.290214	1042.56587	-0.48548	-0.00025356	-1.0365	-0.00054133	-1.5219	-0.00079489	522.2926210085603	30.788	0.73532	30.788	30.483	31.218	0					22	14	3	0	0	0	0.027462	1	1202	1202		34.173	0	1	64568	+		9275	32732	7592	7602	10221	10221					0.04629421752065355
EQLRHGFAQI	10	Unmodified	_EQLRHGFAQI_					0	0	0			REV__SETD2-MRPL44|1|fusion	REV__SETD2-MRPL44|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	600.80078125	2	599.820004	1197.62546	0.81355	0.00048798	3.4797	0.0020872	4.2932	0.0025752	599.8216316779319	114.23	0.77546	114.23	114.01	114.79	0					32	14	4	0	0	0	0.026611	1	13036	13036		49.536	0	1	578550	+		9276	19332	7593	7603	10222	10222					0.03454737486117665
EQLRKKLEVKQ	11	Unmodified	_EQLRKKLEVKQ_					0	0	0		nc|ENSG00000180777|Q9BXX2|ANKRD30B;ENSG00000180777|ENST00000690538|ANKRD30B	nc|ENSG00000180777|Q9BXX2|ANKRD30B	nc|ENSG00000180777|Q9BXX2|ANKRD30B	MULTI-MSMS	OvCa9_classI_Rep2	2	466.9524230957031	3	466.952426	1397.83545	-1.5135	-0.00070674	0.96613	0.00045114	-0.54739	-0.00025561	466.952858762852	61.658	1.9496	58.899	58.515	60.465	-2.7593					109	37	4	0	0	0	0.68059	1	4597	4597		36.318	0	1	461980			9277	7886	7594	7604	10223	10223					0.15244355368463403
EQLRKKRYT	9	Unmodified	_EQLRKKRYT_					0	0	0			REV__ENSG00000163440|ENST00000295645|PDCL2	REV__ENSG00000163440|ENST00000295645|PDCL2	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3544311523438	2	611.356754	1220.69895	-2.3862	-0.0014588	1.1145	0.00068137	-1.2716	-0.00077742	611.3572929291362	147.43	3.7918	146.48	144.56	148.35	-0.9512					254	75	5	0	0	0	0.65371	2	12439	12439;12536		25.574	1.0549	1	250910	+		9278	20837	7595	7605	10224;10225	10224					0.09743285928584555
EQLSPLTKL	9	Unmodified	_EQLSPLTKL_					0	0	0			REV__ENST00000315792.4_1_8:40011447-40011744:+|nuORF	REV__ENST00000315792.4_1_8:40011447-40011744:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.794921875	2	514.802957	1027.59136	-2.0494	-0.001055	-0.38115	-0.00019622	-2.4306	-0.0012513	514.8024476934768	87.728	1.0562	85.102	84.599	85.655	-2.6269					25	20	2	0	0	0	0.027433	1	7460	7460		64.207	14.766	1	41943	+		9279	24401	7596	7606	10226	10226					0.07866896274504143
EQLSPLTKL	9	Unmodified	_EQLSPLTKL_					0	0	0			REV__ENST00000315792.4_1_8:40011447-40011744:+|nuORF	REV__ENST00000315792.4_1_8:40011447-40011744:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	514.802957	1027.59136	-0.42836	-0.00022052	-0.53675	-0.00027632	-0.96511	-0.00049684	514.8026612960049	87.341	0.76842	85.164	84.834	85.602	-2.1768	0.031286	-5.175E-05	NaN	64.207	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44393	+		9280	24401	7596	7606							0.07866896274504143
EQLSPRSGLR	10	Unmodified	_EQLSPRSGLR_					0	0	0			REV__ENSG00000168334|ENST00000340369|XIRP1	REV__ENSG00000168334|ENST00000340369|XIRP1	MULTI-MSMS	OvCa99_classI_Rep5	1	571.8189697265625	2	571.817461	1141.62037	2.0012	0.0011443	2.8014	0.0016019	4.8026	0.0027462	571.818846967787	92.827	0.70796	92.827	92.555	93.263	0					40	16	4	0	0	0	0.53807	1	10070	10070		49.536	1.5765	1	2562000	+		9281	21365	7597	7607	10227	10227					0.05522433623514189
EQLTERTEA	9	Unmodified	_EQLTERTEA_					0	0	0			REV__ENST00000417788.5_1_22:22024636-22041216:+|nuORF	REV__ENST00000417788.5_1_22:22024636-22041216:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	538.76611328125	2	538.76456	1075.51457	-0.078225	-4.2145E-05	-0.053581	-2.8868E-05	-0.13181	-7.1012E-05	538.7645861276925	58.526	0.57134	58.526	58.28	58.852	0					30	13	3	0	0	0	0.29519	1	4981	4981		63.534	4.7519	1	1069800	+		9282	17353	7598	7608	10228	10228					-0.020169470126347733
EQLYDPHQL	9	Unmodified	_EQLYDPHQL_					0	0	0			REV__nc|ENSG00000178568|Q15303-4|ERBB4	REV__nc|ENSG00000178568|Q15303-4|ERBB4	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.8189697265625	2	571.77747	1141.54039	1.8513	0.0010585	3.591	0.0020533	5.4423	0.0031118	571.7794351867714	93.015	0.54465	93.015	92.635	93.179	0					24	12	3	0	0	0	0.027433	1	10070	10070		37.812	0	1	819740	+		9283	22066	7599	7609	10229	10229					-0.024720527703493644
EQMKNMLI	8	Unmodified	_EQMKNMLI_					0	0	0			REV__tr|A0A7D6ZHM9|A0A7D6ZHM9_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_03585PE=4SV=1	REV__tr|A0A7D6ZHM9|A0A7D6ZHM9_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_03585PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	504.2977600097656	2	503.756638	1005.49872	-1.176	-0.00059243	0.9032	0.00045499	-0.27282	-0.00013744	503.75693464957	40.849	0.99446	37.895	37.315	38.31	-2.9541					23	18	2	0	0	0	0.028476	1	1757	1757		11.511	0	1	33609	+		9284	32032	7600	7610	10230	10230					-0.0038064805485191755
EQMSQAQLFTR	11	Unmodified	_EQMSQAQLFTR_					0	0	0		ENSG00000159445|ENST00000368814|THEM4	ENSG00000159445|ENST00000368814|THEM4	ENSG00000159445|ENST00000368814|THEM4	MULTI-SECPEP	OvCa9_classI_Rep3	3	447.75616455078125	3	446.887205	1337.63978	-0.84121	-0.00037593	1.1135	0.0004976	0.27228	0.00012168	446.8878691286499	91.795	0.45747	89.771	89.584	90.041	-2.0241					12	8	2	0	0	0	0.026101	1	5780	5780		21.032	4.5024	1	13116			9285	6012	7601	7611	10231	10231					-0.015529781479017402
EQMSQAQLFTR	11	Unmodified	_EQMSQAQLFTR_					0	0	0		ENSG00000159445|ENST00000368814|THEM4	ENSG00000159445|ENST00000368814|THEM4	ENSG00000159445|ENST00000368814|THEM4	MULTI-MATCH	OvCa9_classI_Rep2	2		3	446.887205	1337.63978	3.5981	0.0016079	-2.3128	-0.0010336	1.2853	0.00057438	446.88589704737774	91.033	0.72402	89.797	89.39	90.114	-1.2355	0.02607	-0.0034517	NaN	25.068	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18803			9286	6012	7601	7611							-0.015529781479017402
EQMWLRPD	8	Unmodified	_EQMWLRPD_					0	0	0			REV__ENST00000575027.1_1_17:6493863-6510239:-|nuORF	REV__ENST00000575027.1_1_17:6493863-6510239:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.8137817382812	2	537.755484	1073.49641	1.5766	0.00084785	-2.8103	-0.0015113	-1.2337	-0.00066342	537.7540264915201	81.728	0.44746	81.728	81.572	82.02	0					15	10	2	0	0	0	0.028476	1	8436	8436		42.474	0	1	209420	+		9287	23093	7602	7612	10232	10232					-0.037393604683074955
EQMWPCPETPA	11	Unmodified	_EQMWPCPETPA_					0	0	0		ENST00000521420.5_1_5:156820382-156820556:+|nuORF	ENST00000521420.5_1_5:156820382-156820556:+|nuORF	ENST00000521420.5_1_5:156820382-156820556:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	645.3345336914062	2	644.770474	1287.52639	-0.93592	-0.00060345	-1.0348	-0.00066719	-1.9707	-0.0012706	645.2711494629676	104.54	0.25502	104.54	104.32	104.58	0					8	5	2	0	0	0	0.025909	1	11707	11707		14.137	0	1	145640			9288	13123	7603	7613	10233	10233					-0.10586789585272527
EQNFPWFTF	9	Unmodified	_EQNFPWFTF_					0	0	0			REV__nc|ENSG00000140459|P05108-2|CYP11A1	REV__nc|ENSG00000140459|P05108-2|CYP11A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.5511169433594	3	405.85383	1214.53966	0.84707	0.00034379	3.1106	0.0012625	3.9577	0.0016062	405.8550087393177	38.95	0.44662	38.95	38.75	39.196	0					16	9	2	0	0	0	0.027462	1	2269	2269		36.447	8.3653	1	145980	+		9289	19675	7604	7614	10234	10234					-0.05902847419383761
EQNIQDLTER	10	Unmodified	_EQNIQDLTER_					0	0	0			REV__RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;REV__ENST00000559070.5_1_17:78261823-78310301:+|nuORF	REV__RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	622.3353271484375	2	623.307123	1244.59969	-0.257	-0.00016019	-3.0424	-0.0018963	-3.2994	-0.0020565	623.8063530872231	62.448	1.3627	58.99	58.667	60.029	-3.4577					52	27	3	0	0	0	0.026653	1	4449	4449		49.536	7.1399	1	80732	+		9290	21802;27592	7605	7615	10235	10235					-0.012822015468145764
EQNNPRLL	8	Unmodified	_EQNNPRLL_					0	0	0		nc|ENSG00000145016|Q92622-3|RUBCN;nc|ENSG00000145016|Q92622-2|RUBCN;ENSG00000145016|ENST00000296343|RUBCN	nc|ENSG00000145016|Q92622-3|RUBCN	nc|ENSG00000145016|Q92622-3|RUBCN	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.28253173828125	2	492.267073	982.519593	-0.54843	-0.00026997	1.9708	0.00097016	1.4224	0.00070018	492.26749545394	48.664	0.48499	48.664	48.501	48.986	0					17	10	2	0	0	0	0.028476	1	3601	3601		65.803	7.0212	1	99985			9291	5197	7606	7616	10236	10236					0.027634016406636874
EQNPQIKK	8	Unmodified	_EQNPQIKK_					0	0	0			REV__tr|A0A553SLN1|A0A553SLN1_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_20980PE=4SV=1	REV__tr|A0A553SLN1|A0A553SLN1_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_20980PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.3226623535156	2	492.777274	983.539994	-0.63368	-0.00031226	0.41238	0.00020321	-0.22131	-0.00010906	492.7773254567589	55.255	0.78085	55.255	55.023	55.804	0					37	18	3	0	0	0	0.028476	1	4493	4493		108.09	31.313	1	3319800	+		9292	30242	7607	7617	10237	10237					0.04756572300470907
EQNRSVHG	8	Unmodified	_EQNRSVHG_					0	0	0			REV__ENST00000225308.12_1_17:42397045-42397120:-|nuORF	REV__ENST00000225308.12_1_17:42397045-42397120:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.2598571777344	2	463.725572	925.436592	-0.26121	-0.00012113	-3.5983	-0.0016686	-3.8595	-0.0017897	463.7238157120141	78	1.0347	76.211	75.675	76.709	-1.7894					32	19	2	0	0	0	0.028476	1	6558	6558		30.504	1.3541	1	18088	+		9293	23757	7608	7618	10238	10238					-0.02910915087329613
EQPCCAGLRG	10	Unmodified	_EQPCCAGLRG_					0	0	0		ENST00000544336.5_2_6:170892694-170893702:-|nuORF	ENST00000544336.5_2_6:170892694-170893702:-|nuORF	ENST00000544336.5_2_6:170892694-170893702:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	516.2957153320312	2	517.231319	1032.44808	1.405	0.00072668	-1.4698	-0.0007602	-0.0648	-3.3517E-05	517.2303677360288	29.5	1.0515	26.79	26.506	27.557	-2.7097					45	21	3	0	0	0	0.02663	1	808	808		51.193	10.415	1	79598			9294	13506	7609	7619	10239	10239					-0.06684177379861467
EQPETYYKW	9	Unmodified	_EQPETYYKW_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	OvCa99_classI_Rep5	1	622.2869873046875	2	622.285128	1242.5557	2.0417	0.0012705	0.18103	0.00011265	2.2228	0.0013832	622.2850020867116	84.214	0.63199	84.214	83.88	84.512	0					42	14	4	0	0	0	0.084918	1	8773	8773		101.25	37.946	1	2412800			9295	6494	7610	7620	10240	10240					-0.05587185973149644
EQPHGKVSSKI	11	Unmodified	_EQPHGKVSSKI_					0	0	0			REV__ENSG00000135315|ENST00000403245|CEP162	REV__ENSG00000135315|ENST00000403245|CEP162	MULTI-MSMS	OvCa99_classI_Rep5	1	605.333251953125	2	605.332944	1208.65134	0.26844	0.0001625	0.73808	0.00044678	1.0065	0.00060928	605.3331936912195	31.633	0.34756	31.633	31.46	31.807	0					15	6	4	0	0	0	0.67685	1	1321	1321		42.864	20.904	1	211310	+		9296	19272	7611	7621	10241	10241					0.055355869377763156
EQPHGKVSSKI	11	Unmodified	_EQPHGKVSSKI_					0	0	0			REV__ENSG00000135315|ENST00000403245|CEP162	REV__ENSG00000135315|ENST00000403245|CEP162	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	605.332944	1208.65134	0.26844	0.0001625	0.73808	0.00044678	1.0065	0.00060928	605.3331936912195	31.633	0.34756	31.633	31.46	31.807	0	0	0	NaN	42.864	15	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211310	+		9297	19272	7611	7621							0.055355869377763156
EQPLGWGYC	9	Unmodified	_EQPLGWGYC_					0	0	0		ENST00000433252.7_1_X:48932732-48932966:-|nuORF	ENST00000433252.7_1_X:48932732-48932966:-|nuORF	ENST00000433252.7_1_X:48932732-48932966:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	527.34912109375	2	526.728935	1051.44332	-1.481	-0.00078008	-2.1649	-0.0011403	-3.6459	-0.0019204	526.727139877596	101.77	0.63109	100.25	100	100.63	-1.5211					17	11	2	0	0	0	0.027462	1	6953	6953		35.618	0	1	14166			9298	11827	7612	7622	10242	10242					-0.08034738250967166
EQPLITHVAL	10	Unmodified	_EQPLITHVAL_					0	0	0			REV__ENSG00000148400|ENST00000651671|NOTCH1	REV__ENSG00000148400|ENST00000651671|NOTCH1	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.7948608398438	2	560.821681	1119.62881	0.17414	9.7662E-05	-0.63768	-0.00035763	-0.46354	-0.00025997	560.8211844754769	54.369	0.45977	54.369	54.13	54.59	0					20	10	3	0	0	0	0.026931	1	4381	4381		37.812	17.815	1	413890	+		9299	20109	7613	7623	10243	10243					0.07377987540144204
EQPRRLDV	8	Unmodified	_EQPRRLDV_					0	0	0			REV__CON__Q3T052	REV__CON__Q3T052	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3149719238281	2	506.780348	1011.54614	-1.3402	-0.0006792	-1.5382	-0.00077952	-2.8784	-0.0014587	507.2819767934942	118.28	0.9995	116.93	116.42	117.42	-1.3444					29	18	2	0	0	0	0.028476	1	11079	11079		35.618	0	1	40283	+	+	9300	16211	7614	7624	10244	10244					0.040830905320035527
EQPRRLVRFVS	11	Unmodified	_EQPRRLVRFVS_					0	0	0			REV__nc|ENSG00000257524|Q969X2-2|ST6GALNAC6	REV__nc|ENSG00000257524|Q969X2-2|ST6GALNAC6	MULTI-MSMS	OvCa9_classI_Rep2	2	462.9372253417969	3	462.936999	1385.78917	0.079191	3.666E-05	-0.90827	-0.00042047	-0.82908	-0.00038381	462.9367014144655	44.408	4.3763	41.698	41.303	45.679	-2.7097					263	87	6	0	0	0	0.67998	1	2595	2595		36.528	1.3497	1	4456400	+		9301	20657	7615	7625	10245	10245					0.1117033525702027
EQPSVAGAF	9	Unmodified	_EQPSVAGAF_					0	0	0			REV__ENSG00000100297|ENST00000216122|MCM5	REV__ENSG00000100297|ENST00000216122|MCM5	MULTI-SECPEP	OvCa99_classI_Rep5	1	453.7566223144531	2	453.2218	904.429047	0.67768	0.00030714	-0.031719	-1.4376E-05	0.64596	0.00029276	453.22164022463977	73.981	0.53036	73.981	73.755	74.286	0					19	13	2	0	0	0	0.027455	1	7277	7277		42.396	0	1	497330	+		9302	17393	7616	7626	10246	10246					-0.02699067407615985
EQPWTTQLM	9	Unmodified	_EQPWTTQLM_					0	0	0			REV__ENST00000490457.5_1_3:40567331-40615968:+|nuORF	REV__ENST00000490457.5_1_3:40567331-40615968:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.2813720703125	2	567.268424	1132.5223	0.69613	0.00039489	1.8319	0.0010392	2.528	0.0014341	567.2692739183985	63.477	0.55278	63.477	63.179	63.732	0					36	13	4	0	0	0	0.027304	1	5725	5725		98.629	10.875	1	1560200	+		9303	21733	7617	7627	10247	10247					-0.03866511016713048
EQPWTTQLM	9	Unmodified	_EQPWTTQLM_					0	0	0			REV__ENST00000490457.5_1_3:40567331-40615968:+|nuORF	REV__ENST00000490457.5_1_3:40567331-40615968:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	567.268424	1132.5223	1.0072	0.00057133	0.38618	0.00021907	1.3933	0.0007904	567.2685075561877	67.015	0.78948	63.525	63.099	63.888	-3.4902	0.024104	-0.0011063	NaN	98.629	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56795	+		9304	21733	7617	7627							-0.03866511016713048
EQPYKWEKF	9	Unmodified	_EQPYKWEKF_					0	0	0		nc|ENSG00000213096|O75437-2|ZNF254;ENSG00000213096|ENST00000357002|ZNF254	nc|ENSG00000213096|O75437-2|ZNF254	nc|ENSG00000213096|O75437-2|ZNF254	MSMS	OvCa99_classI_Rep5	1	627.8131103515625	2	627.811313	1253.60807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.534	1	73.534	73.034	74.034	0								0	0	0	0.022462	1	7220	7220		95.815	24.999	1				9305	9118	7618	7628	10248	10248					-0.00858602839548439
EQQEALQEL	9	Unmodified	_EQQEALQEL_					0	0	0		ENST00000545710.1_1_12:9658946-9659045:-|nuORF;ENSG00000137040|ENST00000259569|RANBP6	ENST00000545710.1_1_12:9658946-9659045:-|nuORF	ENST00000545710.1_1_12:9658946-9659045:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	544.8071899414062	2	544.266936	1086.51932	-0.39386	-0.00021436	4.3819	0.0023849	3.9881	0.0021706	544.2684240105654	78.278	0.34809	76.538	76.459	76.807	-1.7398					9	6	2	0	0	0	0.027309	1	6532	6532		70.816	0	1	10685			9306	4548	7619	7629	10249	10249					-0.020480628698578585
EQQETRSKL	9	Unmodified	_EQQETRSKL_					0	0	0			REV__ENST00000249270.11_1_7:102963170-102964072:-|nuORF	REV__ENST00000249270.11_1_7:102963170-102964072:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.2682495117188	2	559.793652	1117.57275	0.48606	0.00027209	-1.3048	-0.0007304	-0.8187	-0.0004583	559.7931299391272	46.891	0.4856	46.891	46.545	47.03	0					16	10	2	0	0	0	0.027426	1	3329	3329		66.429	7.6473	1	179030	+		9307	23852	7620	7630	10250	10250					0.018667346326765255
EQQGEMARS	9	Unmodified	_EQQGEMARS_					0	0	0		nc|ENSG00000059573|P54886-2|ALDH18A1;ENSG00000059573|ENST00000371224|ALDH18A1	nc|ENSG00000059573|P54886-2|ALDH18A1	nc|ENSG00000059573|P54886-2|ALDH18A1	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.3255004882812	2	518.22983	1034.44511	-0.6192	-0.00032089	2.9099	0.001508	2.2908	0.0011871	518.2311158362985	84.32	0.85813	82.059	81.7	82.558	-2.261					29	17	3	0	0	0	0.027447	1	4841	4841		47.657	17.34	1	17698			9308	1253	7621	7631	10251	10251					-0.07073729233025006
EQQGEMARS	9	Unmodified	_EQQGEMARS_					0	0	0		nc|ENSG00000059573|P54886-2|ALDH18A1;ENSG00000059573|ENST00000371224|ALDH18A1	nc|ENSG00000059573|P54886-2|ALDH18A1	nc|ENSG00000059573|P54886-2|ALDH18A1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	518.22983	1034.44511	-0.23467	-0.00012161	2.6993	0.0013988	2.4646	0.0012772	518.2312342600678	83.528	0.74516	81.929	81.685	82.43	-1.5989	-0.065283	-8.9494E-05	NaN	47.657	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26773			9309	1253	7621	7631							-0.07073729233025006
EQQIDILPE	9	Unmodified	_EQQIDILPE_					0	0	0			REV__nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3	REV__nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.2832641601562	2	542.779679	1083.5448	-2.7269	-0.0014801	2.0822	0.0011302	-0.64463	-0.00034989	542.7809867084094	125.8	0.63719	124.39	124.14	124.78	-1.4143					21	12	3	0	0	0	0.48047	1	11956	11956		44.377	1.5129	1	17510	+		9310	22057	7622	7632	10252	10252					0.0063741165256487875
EQQIDILPE	9	Unmodified	_EQQIDILPE_					0	0	0			REV__nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3	REV__nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.779679	1083.5448	-0.17007	-9.2308E-05	-0.64984	-0.00035272	-0.81991	-0.00044503	542.779453091173	124.44	1.0352	124.21	123.88	124.91	-0.23193	-0.11499	-0.000554	NaN	44.377	25	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21816	+		9311	22057	7622	7632							0.0063741165256487875
EQQIDILPE	9	Unmodified	_EQQIDILPE_					0	0	0			REV__nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3	REV__nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	542.779679	1083.5448	1.766	0.00095854	-1.9947	-0.0010827	-0.22869	-0.00012413	542.77858455876	125.44	0.67269	124.38	124.16	124.83	-1.0519	0.056635	-0.0020139	NaN	44.377	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20269	+		9312	22057	7622	7632							0.0063741165256487875
EQQIDILPE	9	Unmodified	_EQQIDILPE_					0	0	0			REV__nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3	REV__nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	542.779679	1083.5448	-2.7269	-0.0014801	2.0822	0.0011302	-0.64463	-0.00034989	542.7809867084094	125.8	0.63719	124.39	124.14	124.78	-1.4143	0.058359	0.0024118	NaN	44.377	21	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17510	+		9313	22057	7622	7632							0.0063741165256487875
EQQKKAAII	9	Unmodified	_EQQKKAAII_					0	0	0		ENSG00000167085|ENST00000300408|PHB1	ENSG00000167085|ENST00000300408|PHB1	ENSG00000167085|ENST00000300408|PHB1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.2726440429688	2	514.808574	1027.60259	0.089523	4.6087E-05	-0.64088	-0.00032993	-0.55135	-0.00028384	514.8079930104972	60.576	1.045	57.146	56.799	57.844	-3.43					51	20	3	0	0	0	0.027462	1	4067	4067		21.96	7.095	1	170860			9314	6751	7623	7633	10253	10253					0.0898971836866167
EQQKKAAII	9	Unmodified	_EQQKKAAII_					0	0	0		ENSG00000167085|ENST00000300408|PHB1	ENSG00000167085|ENST00000300408|PHB1	ENSG00000167085|ENST00000300408|PHB1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.808574	1027.60259	-0.39488	-0.00020329	0.19207	9.8878E-05	-0.20282	-0.00010441	514.8084654688105	59.832	1.3046	57.062	56.514	57.819	-2.7702	-0.042116	0.00038376	NaN	21.96	53	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73040			9315	6751	7623	7633							0.0898971836866167
EQQKVAQRI	9	Unmodified	_EQQKVAQRI_					0	0	0		ENST00000511730.2_1_5:40716249-40756023:-|nuORF;ENSG00000113638|ENST00000337702|TTC33	ENST00000511730.2_1_5:40716249-40756023:-|nuORF	ENST00000511730.2_1_5:40716249-40756023:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	550.31396484375	2	550.314554	1098.61456	-1.3456	-0.0007405	1.7468	0.0009613	0.40123	0.0002208	550.31547199865	34.609	0.41996	34.609	34.398	34.818	0					17	8	3	0	0	0	0.5811	1	1688	1688		34.173	5.0025	1	399330			9316	2984	7624	7634	10254	10254					0.06919335111865621
EQQLEKEIT	9	Unmodified	_EQQLEKEIT_					0	0	0			REV__ENSG00000169340|ENST00000302451|PDILT	REV__ENSG00000169340|ENST00000302451|PDILT	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.2847290039062	2	559.290411	1116.56627	0.0070354	3.9348E-06	-0.90057	-0.00050368	-0.89353	-0.00049974	559.2899650754254	55.181	0.75076	55.181	54.848	55.599	0					43	17	4	0	0	0	0.027433	1	4466	4466		45.972	0	1	1523400	+		9317	21455	7625	7635	10255	10255					0.012647966812892264
EQQLEKEIT	9	Unmodified	_EQQLEKEIT_					0	0	0			REV__ENSG00000169340|ENST00000302451|PDILT	REV__ENSG00000169340|ENST00000302451|PDILT	MULTI-MATCH	OvCa9_classI_Rep2	2		2	559.290411	1116.56627	-0.094381	-5.2786E-05	-6.1815	-0.0034572	-6.2758	-0.00351	559.2867287734798	57.724	1.298	54.932	54.278	55.576	-2.792	-0.036714	0.0007967	NaN	45.972	57	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42456	+		9318	21455	7625	7635							0.012647966812892264
EQQLEKEIT	9	Unmodified	_EQQLEKEIT_					0	0	0			REV__ENSG00000169340|ENST00000302451|PDILT	REV__ENSG00000169340|ENST00000302451|PDILT	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	559.290411	1116.56627	0.78977	0.00044171	-7.0602	-0.0039487	-6.2705	-0.003507	559.2863008905218	58.309	1.8184	54.926	53.845	55.664	-3.3829	-0.042062	-0.00018626	NaN	45.972	79	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	227390	+		9319	21455	7625	7635							0.012647966812892264
EQQLQHQLQH	10	Unmodified	_EQQLQHQLQH_					0	0	0			REV__nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	REV__nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	MULTI-SECPEP	OvCa9_classI_Rep4_	4	429.9260559082031	3	430.217942	1287.632	0.33587	0.0001445	-0.96234	-0.00041402	-0.62647	-0.00026952	430.21741876880424	51.482	2.0816	48.309	47.047	49.129	-3.1734					70	40	3	0	0	0	0.02716	1	3101	3101		22.562	6.0317	1	118350	+		9320	23305	7626	7636	10256	10256					-0.0003136935313250433
EQQLQHQLQH	10	Unmodified	_EQQLQHQLQH_					0	0	0			REV__nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	REV__nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	MULTI-MATCH	OvCa9_classI_Rep2	2		3	430.217942	1287.632	-1.6537	-0.00071147	2.0675	0.0008895	0.4138	0.00017802	430.2184028410462	51.075	1.5365	48.281	47.827	49.364	-2.794	-0.014067	0.0018552	NaN	39.873	68	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57709	+		9321	23305	7626	7636							-0.0003136935313250433
EQQPQTELAP	10	Unmodified	_EQQPQTELAP_					0	0	0			REV__ENSG00000198780|ENST00000687041|FAM169A	REV__ENSG00000198780|ENST00000687041|FAM169A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	569.7859497070312	2	570.78021	1139.54587	-0.31967	-0.00018246	1.6938	0.00096681	1.3742	0.00078435	570.7815400206565	91.302	0.6069	88.759	88.605	89.212	-2.5425					17	11	2	0	0	0	0.027117	1	7879	7879		28.081	5.039	1	86306	+		9322	23060	7627	7637	10257	10257					-0.018323739785273574
EQQSALDKL	9	Unmodified	_EQQSALDKL_					0	0	0		tr|A0A553SKD3|A0A553SKD3_NIACISPORdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18380PE=4SV=1	tr|A0A553SKD3|A0A553SKD3_NIACISPORdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18380PE=4SV=1	tr|A0A553SKD3|A0A553SKD3_NIACISPORdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18380PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.2401123046875	2	516.272021	1030.52949	1.993	0.0010289	-3.9351	-0.0020316	-1.9421	-0.0010027	516.7710137678424	95.819	0.30038	95.819	95.656	95.956	0					10	6	3	0	0	0	0.027433	1	10456	10456		64.207	3.2353	1	92436			9323	33604	7628	7638	10258	10258					0.015445448553691676
EQREAAGVL	9	Unmodified	_EQREAAGVL_					0	0	0		ENSG00000140948|ENST00000671377|ZCCHC14	ENSG00000140948|ENST00000671377|ZCCHC14	ENSG00000140948|ENST00000671377|ZCCHC14	MULTI-MSMS	OvCa99_classI_Rep5	1	486.7603759765625	2	486.759081	971.503609	-0.42304	-0.00020592	0.33087	0.00016105	-0.092171	-4.4865E-05	486.7591917730426	56.03	1.2402	56.03	55.764	57.004	0					68	29	5	0	0	0	0.29519	1	4636	4636		63.534	1.4264	1	7681000			9324	4881	7629	7639	10259	10259					0.016716954037633514
EQRGDVAHRLA	11	Unmodified	_EQRGDVAHRLA_					0	0	0			REV__ENST00000485899.1_1_3:52730485-52734476:-|nuORF	REV__ENST00000485899.1_1_3:52730485-52734476:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	417.89031982421875	3	417.889937	1250.64798	-0.22916	-9.5764E-05	-0.51153	-0.00021376	-0.74069	-0.00030953	417.88980977921636	26.066	0.39881	26.066	25.843	26.242	0					18	7	3	0	0	0	0.72069	1	647	647		22.562	0.78116	1	164340	+		9325	16526	7630	7640	10260	10260					0.03268336883752454
EQRGGRQV	8	Unmodified	_EQRGGRQV_					0	0	0		ENST00000296292.7_1_3:53126532-53133480:-|nuORF	ENST00000296292.7_1_3:53126532-53133480:-|nuORF	ENST00000296292.7_1_3:53126532-53133480:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.26171875	2	465.249215	928.483876	-0.39797	-0.00018515	0.21022	9.7806E-05	-0.18775	-8.7349E-05	465.2493754838857	79.29	0.80825	76.538	76.322	77.13	-2.7514					26	16	2	0	0	0	0.028476	1	6417	6417		38.806	16.846	1	78557			9326	10132	7631	7641	10261	10261					0.016773641836607567
EQRGGRQV	8	Unmodified	_EQRGGRQV_					0	0	0		ENST00000296292.7_1_3:53126532-53133480:-|nuORF	ENST00000296292.7_1_3:53126532-53133480:-|nuORF	ENST00000296292.7_1_3:53126532-53133480:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	465.249215	928.483876	-0.18917	-8.8012E-05	1.4507	0.00067494	1.2615	0.00058692	465.2495641239255	78.894	0.94188	76.554	76.213	77.155	-2.3399	0.0077751	0.00066769	NaN	38.806	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64363			9327	10132	7631	7641							0.016773641836607567
EQRKEAQKR	9	Unmodified	_EQRKEAQKR_					0	0	0			REV__nc|ENSG00000165810|Q6UXG8-3|BTNL9	REV__nc|ENSG00000165810|Q6UXG8-3|BTNL9	MULTI-MSMS	OvCa9_classI_Rep3	3	586.8238525390625	2	586.82836	1171.64217	-5.6685	-0.0033265	-2.5069	-0.0014711	-8.1754	-0.0047976	586.8267226357335	149.07	1.5069	148.12	147.65	149.16	-0.9512					81	29	4	0	0	0	0.5811	1	12595	12595		34.173	1.3601	1	213470	+		9328	21122	7632	7642	10262	10262					0.06321238372083826
EQRKGRAGRV	10	Unmodified	_EQRKGRAGRV_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	OvCa9_classI_Rep3	3	578.8580322265625	2	578.83652	1155.65849	-1.3428	-0.00077724	2.5104	0.0014531	1.1676	0.00067585	578.8384301628907	74.699	1.5312	72.289	71.747	73.278	-2.4106					72	30	3	0	0	0	0.026826	1	3705	3705		52.937	23.787	1	83340			9329	4419	7633	7643	10263	10263					0.08688364328827447
EQRLLIVL	8	Unmodified	_EQRLLIVL_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3053894042969	2	492.316035	982.617516	-0.31333	-0.00015426	-0.021034	-1.0355E-05	-0.33436	-0.00016461	492.3159031328505	114.55	1.0933	113.5	113.05	114.14	-1.055					57	21	3	0	0	0	0.028476	1	8538	8538		23.037	1.3344	1	39786			9330	2918	7634	7644	10264	10264					0.12551210236654242
EQRLLLQKEHI	11	Unmodified	_EQRLLLQKEHI_					0	0	0			REV__nc|ENSG00000164877|Q8IY33-3|MICALL2	REV__nc|ENSG00000164877|Q8IY33-3|MICALL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	469.59375	3	469.608659	1405.80415	-0.25221	-0.00011844	-0.65781	-0.00030891	-0.91003	-0.00042736	469.60799611373363	48.697	0.22053	48.697	48.63	48.851	0					7	4	2	0	0	0	0.025632	1	3611	3611		41.109	19.329	1	140550	+		9331	26205	7635	7645	10265	10265					0.11747782334373369
EQRLQQQA	8	Unmodified	_EQRLQQQA_					0	0	0		ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	MULTI-MSMS	OvCa99_classI_Rep5	1	500.7615966796875	2	500.762155	999.509757	-0.90626	-0.00045382	0.67214	0.00033658	-0.23411	-0.00011723	500.7623686529184	28.218	0.69748	28.218	28.041	28.739	0					27	13	3	0	0	0	0.68714	1	901	901		45.952	1.8352	1	377560			9332	5076	7636	7646	10266	10266					0.009982136352732596
EQRLRRLLQSW	11	Unmodified	_EQRLRRLLQSW_					0	0	0			REV__ENST00000253686.6_1_3:15091344-15091416:-|nuORF	REV__ENST00000253686.6_1_3:15091344-15091416:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.2991638183594	3	495.61967	1483.83718	2.0114	0.00099691	-1.2255	-0.00060741	0.78588	0.0003895	495.61900113875186	76.998	0.73419	76.998	76.518	77.252	0					33	17	3	0	0	0	0.026444	1	7687	7687		7.3413	0	1	998220	+		9333	23874	7637	7647	10267	10267					0.11461409177081805
EQRLTGLVVF	10	Unmodified	_EQRLTGLVVF_					0	0	0		nc|ENSG00000113073|Q96Q91-4|SLC4A9;nc|ENSG00000113073|Q96Q91-2|SLC4A9;ENSG00000113073|ENST00000506757|SLC4A9;nc|ENSG00000113073|Q96Q91|SLC4A9	nc|ENSG00000113073|Q96Q91-4|SLC4A9	nc|ENSG00000113073|Q96Q91-4|SLC4A9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	580.8401489257812	2	581.334956	1160.65536	-1.6151	-0.00093889	-2.2785	-0.0013246	-3.8935	-0.0022634	581.3330361379199	92.845	0.75206	90.337	90.111	90.863	-2.5072					27	14	4	0	0	0	0.026523	1	8089	8089		68.787	15.85	1	82942			9334	2947	7638	7648	10268	10268					0.08145676431445281
EQRQNITRI	9	Unmodified	_EQRQNITRI_					0	0	0		L1P2_dup1497|chr19:20226195-20227139:-|1.0833442391613386|0.1594826865315493|2.76|428.0|31|3|sense	L1P2_dup1497|chr19:20226195-20227139:-|1.0833442391613386|0.1594826865315493|2.76|428.0|31|3|sense	L1P2_dup1497|chr19:20226195-20227139:-|1.0833442391613386|0.1594826865315493|2.76|428.0|31|3|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	579.3219604492188	2	579.322911	1156.63127	2.6185	0.0015169	-2.7111	-0.0015706	-0.092569	-5.3628E-05	579.3212562959395	26.202	0.67894	23.493	23.343	24.022	-2.7097					37	15	3	0	0	0	0.70914	1	355	355		14.865	2.658	1	118080			9335	14639	7639	7649	10269	10269					0.05921835997787639
EQRRRNGI	8	Unmodified	_EQRRRNGI_					0	0	0			REV__nc|ENSG00000062598|Q96JJ3-3|ELMO2	REV__nc|ENSG00000062598|Q96JJ3-3|ELMO2	MULTI-MSMS	OvCa99_classI_Rep5	1	514.790771484375	2	514.789038	1027.56352	2.3767	0.0012235	2.716	0.0013982	5.0927	0.0026217	514.7904530782063	75.848	0.882	75.848	75.523	76.405	0					35	20	2	0	0	0	0.67872	1	7571	7571		47.657	1.6851	1	3964400	+		9336	16753	7640	7650	10270	10270					0.050844308576643016
EQRTGSAPTW	10	Unmodified	_EQRTGSAPTW_					0	0	0			REV__ENST00000475924.5_1_22:39052689-39064138:+|nuORF	REV__ENST00000475924.5_1_22:39052689-39064138:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.7998046875	2	566.772719	1131.53089	0.28383	0.00016087	-0.58591	-0.00033208	-0.30209	-0.00017121	566.7724145523788	32.031	0.59577	32.031	31.708	32.303	0					18	11	2	0	0	0	0.026734	1	1360	1360		39.253	0	1	165770	+		9337	26362	7641	7651	10271	10271					-0.029618210558510327
EQSIREQILL	10	Unmodified	_EQSIREQILL_					0	0	0		nc|ENSG00000215252|A8MQT2-2|GOLGA8B;ENSG00000215252|ENST00000683415|GOLGA8B;ENSG00000175265|ENST00000359187|GOLGA8A;nc|ENSG00000175265|A7E2F4|GOLGA8A	nc|ENSG00000215252|A8MQT2-2|GOLGA8B	nc|ENSG00000215252|A8MQT2-2|GOLGA8B	MULTI-MSMS	OvCa9_classI_Rep4_	4	614.8497314453125	2	614.848427	1227.6823	-0.5212	-0.00032046	-0.1765	-0.00010852	-0.6977	-0.00042898	614.8483661587021	80.259	1.2738	77.548	77.22	78.494	-2.7106					67	25	5	0	0	0	0.5635	1	6545	6545		46.457	6.3986	1	468080			9338	7530	7642	7652	10272	10272					0.07756740251988958
EQSNLEKLE	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))EQSNLEKLE_					1	0	0		nc|ENSG00000119397|Q7Z7A1-2|CNTRL;nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;nc|ENSG00000119397|Q7Z7A1-4|CNTRL;nc|ENSG00000119397|Q7Z7A1-3|CNTRL	nc|ENSG00000119397|Q7Z7A1-2|CNTRL	nc|ENSG00000119397|Q7Z7A1-2|CNTRL	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.2813720703125	2	566.280043	1130.54553	1.9928	0.0011285	-2.3362	-0.0013229	-0.34336	-0.00019444	566.2785863030133	67.408	1.2767	63.917	63.59	64.867	-3.4902					63	25	3	0	0	0	0.026923	1	4947	4947		138.83	13.011	1	738640			9339	3358	7643	7653	10273	10273					-0.01451793698356596
EQSNLEKLE	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))EQSNLEKLE_					1	0	0		nc|ENSG00000119397|Q7Z7A1-2|CNTRL;nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;nc|ENSG00000119397|Q7Z7A1-4|CNTRL;nc|ENSG00000119397|Q7Z7A1-3|CNTRL	nc|ENSG00000119397|Q7Z7A1-2|CNTRL	nc|ENSG00000119397|Q7Z7A1-2|CNTRL	MULTI-MATCH	OvCa9_classI_Rep2	2		2	566.280043	1130.54553	0.043422	2.4589E-05	0.74241	0.00042041	0.78583	0.000445	566.2804171320616	66.785	1.1416	64.089	63.567	64.708	-2.6958	0.085925	0.0028573	NaN	138.83	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130250			9340	3358	7643	7653							-0.01451793698356596
EQSPKESIL	9	Unmodified	_EQSPKESIL_					0	0	0			REV__ENSG00000164615|ENST00000297156|CAMLG	REV__ENSG00000164615|ENST00000297156|CAMLG	MULTI-MSMS	OvCa99_classI_Rep5	1	515.7739868164062	2	515.774396	1029.53424	-0.38611	-0.00019914	0.088839	4.5821E-05	-0.29727	-0.00015332	515.774306165704	65.213	0.7493	65.213	64.916	65.665	0					59	18	5	0	0	0	0.3076	1	6000	6000		62.107	0	1	7705400	+		9341	21002	7644	7654	10274	10274					0.020654289981621332
EQSPRPYTQWY	11	Unmodified	_EQSPRPYTQWY_					0	0	0			REV__ENST00000394104.6_1_9:128070027-128070084:+|nuORF	REV__ENST00000394104.6_1_9:128070027-128070084:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	485.56536865234375	3	485.561486	1453.66263	0.023702	1.1509E-05	3.4993	0.0016991	3.523	0.0017106	485.56314468683297	57.159	0.94376	57.159	56.788	57.732	0					37	21	2	0	0	0	0.67998	1	4799	4799		36.528	10.465	1	1941600	+		9342	25291	7645	7655	10275	10275					-0.04605635758753124
EQSQWNEIN	9	Unmodified	_EQSQWNEIN_					0	0	0			REV__ENSG00000140522|ENST00000268125|RLBP1	REV__ENSG00000140522|ENST00000268125|RLBP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.3124389648438	2	574.25436	1146.49417	-1.1837	-0.00067976	-0.92439	-0.00053083	-2.1081	-0.0012106	574.2538824613789	65.66	0.47737	65.66	65.426	65.904	0					27	11	3	0	0	0	0.027462	1	6028	6028		27.882	9.6202	1	811520	+		9343	19682	7646	7656	10276	10276					-0.07322117672401873
EQSRQFPY	8	Unmodified	_EQSRQFPY_					0	0	0			REV__ENSG00000103148|ENST00000611875|NPRL3	REV__ENSG00000103148|ENST00000611875|NPRL3	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.81396484375	2	527.751256	1053.48796	-1.1457	-0.00060464	-3.8467	-0.0020301	-4.9924	-0.0026347	527.7494794473033	27.517	0.4998	27.517	27.191	27.691	0					17	9	3	0	0	0	0.028476	1	796	796		24.203	2.2429	1	51693	+		9344	17597	7647	7657	10277	10277					-0.0366459111326094
EQSRVKKME	9	Unmodified	_EQSRVKKME_					0	0	0			REV__ENSG00000162620|ENST00000354431|LRRIQ3	REV__ENSG00000162620|ENST00000354431|LRRIQ3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	566.81787109375	2	567.800423	1133.58629	-0.28989	-0.0001646	4.0207	0.002283	3.7309	0.0021184	567.8039682166824	87.353	1.053	84.726	84.3	85.353	-2.6269					37	20	3	0	0	0	0.027462	1	7486	7486		38.754	8.25	1	25586	+		9345	20756	7648	7658	10278	10278					0.02484269140268225
EQSVLFKSL	9	Unmodified	_EQSVLFKSL_					0	0	0		nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;ENSG00000112297|ENST00000633556|CRYBG1	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.2745361328125	2	525.795132	1049.57571	-1.4465	-0.00076058	-1.3392	-0.00070413	-2.7857	-0.0014647	525.7956102072015	95.174	0.65138	92.705	92.36	93.012	-2.4685					28	12	3	0	0	0	0.027247	1	8360	8360		69.628	0	1	52906			9346	2894	7649	7659	10279	10279					0.052906097574805244
EQTDDTRQIPL	11	Unmodified	_EQTDDTRQIPL_					0	0	0			REV__ENSG00000083093|ENST00000261584|PALB2	REV__ENSG00000083093|ENST00000261584|PALB2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	438.2506103515625	3	439.221129	1314.64156	-0.5369	-0.00023582	-2.8571	-0.0012549	-3.394	-0.0014907	439.2197686886022	40.208	1.0884	37.254	37.012	38.101	-2.9541					49	20	4	0	0	0	0.025722	1	1742	1742		41.08	2.366	1	123910	+		9347	17094	7650	7660	10280	10280					-0.003176458582856867
EQTNDEATQL	10	Unmodified	_EQTNDEATQL_					0	0	0			REV__RREB1|p.D1206E|1|0.1|ENSG00000124782|chr6:7231717-7231717|T/G|missense_variant	REV__RREB1|p.D1206E|1|0.1|ENSG00000124782|chr6:7231717-7231717|T/G|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	574.7575073242188	2	574.756932	1147.49931	-0.25643	-0.00014739	0.18226	0.00010476	-0.074169	-4.2629E-05	574.7569788831622	46.914	0.87711	46.914	46.631	47.508	0					56	19	5	0	0	0	0.3094	1	3360	3360		79.713	2.9384	1	4195200	+		9348	29344	7651	7661	10281	10281					-0.0685385860047063
EQVAVKSLK	9	Unmodified	_EQVAVKSLK_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;ENST00000481702.1_1_1:65305238-65306936:-|nuORF	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.302734375	2	501.303124	1000.5917	0.46026	0.00023073	-0.84857	-0.00042539	-0.38831	-0.00019466	501.302599098309	35.713	1.0486	32.864	32.69	33.739	-2.849					39	20	3	0	0	0	0.1243	1	1168	1168		90.601	0.23104	1	108450			9349	6182	7652	7662	10282	10282					0.09142315994381534
EQVAVKSLK	9	Unmodified	_EQVAVKSLK_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;ENST00000481702.1_1_1:65305238-65306936:-|nuORF	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	501.303124	1000.5917	-2.8664	-0.0014369	2.4137	0.00121	-0.45262	-0.0002269	501.30419726916614	35.874	0.29897	33.164	33.001	33.3	-2.7097	0.15016	0.0027744	NaN	90.601	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23988			9350	6182	7652	7662							0.09142315994381534
EQVDFHLSL	9	Unmodified	_EQVDFHLSL_					0	0	0		tr|A0A553SSS3|A0A553SSS3_NIACIBiotin-independentmalonatedecarboxylasesubunitbetaOS=NialliacirculansOX=1397GN=mdcDPE=4SV=1	tr|A0A553SSS3|A0A553SSS3_NIACIBiotin-independentmalonatedecarboxylasesubunitbetaOS=NialliacirculansOX=1397GN=mdcDPE=4SV=1	tr|A0A553SSS3|A0A553SSS3_NIACIBiotin-independentmalonatedecarboxylasesubunitbetaOS=NialliacirculansOX=1397GN=mdcDPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	544.8064575195312	2	544.274564	1086.53457	-0.73556	-0.00040035	1.1687	0.00063608	0.43311	0.00023573	544.2752623080046	77.341	1.5656	75.552	74.843	76.409	-1.7894					51	29	3	0	0	0	0.027462	1	6516	6516		39.253	13.803	1	27237			9351	34412	7653	7663	10283	10283					-0.005231512819818818
EQVDFHLSL	9	Unmodified	_EQVDFHLSL_					0	0	0		tr|A0A553SSS3|A0A553SSS3_NIACIBiotin-independentmalonatedecarboxylasesubunitbetaOS=NialliacirculansOX=1397GN=mdcDPE=4SV=1	tr|A0A553SSS3|A0A553SSS3_NIACIBiotin-independentmalonatedecarboxylasesubunitbetaOS=NialliacirculansOX=1397GN=mdcDPE=4SV=1	tr|A0A553SSS3|A0A553SSS3_NIACIBiotin-independentmalonatedecarboxylasesubunitbetaOS=NialliacirculansOX=1397GN=mdcDPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	544.274564	1086.53457	-0.50245	-0.00027347	-0.28142	-0.00015317	-0.78387	-0.00042664	544.2750436301467	78.209	0.81548	75.392	75.018	75.834	-2.8165	-0.079676	-0.00071966	NaN	56.721	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73799			9352	34412	7653	7663							-0.005231512819818818
EQVDNFLDL	9	Unmodified	_EQVDNFLDL_					0	0	0		ENSG00000166352|ENST00000334307|IFTAP	ENSG00000166352|ENST00000334307|IFTAP	ENSG00000166352|ENST00000334307|IFTAP	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.2815551757812	2	546.764029	1091.5135	-0.71092	-0.00038871	3.964	0.0021674	3.2531	0.0017787	546.7662296955125	59.23	1.0705	59.23	59.083	60.153	0					44	27	2	0	0	0	0.027462	1	5208	5208		42.864	12.547	1	775790			9353	6670	7654	7664	10284	10284					-0.02859161381525155
EQVDNFLDL	9	Unmodified	_EQVDNFLDL_					0	0	0		ENSG00000166352|ENST00000334307|IFTAP	ENSG00000166352|ENST00000334307|IFTAP	ENSG00000166352|ENST00000334307|IFTAP	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	546.764029	1091.5135	-0.59113	-0.00032321	2.9066	0.0015892	2.3155	0.001266	546.7655121754387	62.531	1.1223	59.073	58.667	59.789	-3.4577	-0.078403	-0.00043468	NaN	60.118	33	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63091			9354	6670	7654	7664							-0.02859161381525155
EQVDPPVQI	9	Unmodified	_EQVDPPVQI_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;ENST00000479213.1_1_6:131914123-131917288:-|nuORF	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.7667846679688	2	512.769114	1023.52368	-0.6249	-0.00032043	0.30276	0.00015524	-0.32215	-0.00016519	512.7695931685535	40.041	1.1854	37.087	36.863	38.049	-2.9541					55	22	4	0	0	0	0.31747	1	1700	1700		60.972	0.67798	1	570520			9355	2892	7655	7665	10285	10285					0.01285446343717922
EQVKQAFHD	9	Unmodified	_EQVKQAFHD_					0	0	0		ENSG00000205327|ENST00000548615|OR6C68	ENSG00000205327|ENST00000548615|OR6C68	ENSG00000205327|ENST00000548615|OR6C68	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.3638916015625	2	551.269813	1100.52507	0.1608	8.8647E-05	-0.67464	-0.00037191	-0.51384	-0.00028326	551.2693654207603	61.118	1.1082	57.688	57.395	58.503	-3.43					47	22	3	0	0	0	0.027447	1	4162	4162		66.429	5.4573	1	120960			9356	9065	7656	7666	10286	10286					-0.021169195675156516
EQVKQAFHD	9	Unmodified	_EQVKQAFHD_					0	0	0		ENSG00000205327|ENST00000548615|OR6C68	ENSG00000205327|ENST00000548615|OR6C68	ENSG00000205327|ENST00000548615|OR6C68	MULTI-MATCH	OvCa99_classI_Rep5	1		2	551.269813	1100.52507	-0.068251	-3.7625E-05	-2.261	-0.0012464	-2.3292	-0.001284	551.7691082440148	57.281	0.38642	57.281	57.093	57.48	0	-0.25404	-0.0021332	NaN	66.429	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81635			9357	9065	7656	7666							-0.021169195675156516
EQVKQAFHD	9	Unmodified	_EQVKQAFHD_					0	0	0		ENSG00000205327|ENST00000548615|OR6C68	ENSG00000205327|ENST00000548615|OR6C68	ENSG00000205327|ENST00000548615|OR6C68	MULTI-MATCH	OvCa9_classI_Rep2	2		2	551.269813	1100.52507	-0.18332	-0.00010106	0.02868	1.5811E-05	-0.15464	-8.5251E-05	551.2697856255174	60.406	0.84327	57.635	57.186	58.029	-2.7702	0.10082	0.00039124	NaN	66.429	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38076			9358	9065	7656	7666							-0.021169195675156516
EQVLHLGI	8	Unmodified	_EQVLHLGI_					0	0	0			REV__ENST00000342295.5_2_4:26434113-26434272:+|nuORF	REV__ENST00000342295.5_2_4:26434113-26434272:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	454.76446533203125	2	454.763635	907.512717	2.0727	0.00094261	0.20451	9.3005E-05	2.2773	0.0010356	454.7636468337306	79.475	2.6153	79.475	79.16	81.776	0					183	63	4	0	0	0	0.56195	1	8164	8164		71.296	0	1	26941000	+		9359	24647	7657	7667	10287	10287					0.055260887600866226
EQVLKGPEE	9	Unmodified	_EQVLKGPEE_					0	0	0		ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000491786.5_1_2:47205894-47301059:+|nuORF;ENST00000409825.5_1_2:47184044-47301059:+|nuORF;MSH2-TTC7A|4|fusion;MSH2-TTC7A|3|fusion;ENST00000496991.3_1_2:47273454-47277504:+|nuORF	ENSG00000068724|ENST00000319190|TTC7A	ENSG00000068724|ENST00000319190|TTC7A	MULTI-MSMS	OvCa9_classI_Rep2	2	514.7701416015625	2	514.766571	1027.51859	3.6733	0.0018909	0.48306	0.00024866	4.1563	0.0021395	514.7667501531362	25.363	0.83264	22.654	22.479	23.311	-2.7097					28	18	2	0	0	0	0.70177	1	259	259		17.365	0.66	1	64230			9360	1395	7658	7668	10288	10288					0.005931424811024044
EQVNNVGINV	10	Unmodified	_EQVNNVGINV_					0	0	0			REV__nc|ENSG00000197429|Q9Y573-2|IPP	REV__nc|ENSG00000197429|Q9Y573-2|IPP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.3077392578125	2	543.28292	1084.55129	-0.39356	-0.00021381	0.19042	0.00010345	-0.20314	-0.00011036	543.2826755285421	56.631	1.0129	53.337	52.87	53.883	-3.2944					41	19	3	0	0	0	0.026891	1	3629	3629		39.253	3.6345	1	93105	+		9361	22922	7659	7669	10289	10289					0.012393496039521779
EQVNNVGINV	10	Unmodified	_EQVNNVGINV_					0	0	0			REV__nc|ENSG00000197429|Q9Y573-2|IPP	REV__nc|ENSG00000197429|Q9Y573-2|IPP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	543.28292	1084.55129	-1.329	-0.00072204	0.70043	0.00038053	-0.62861	-0.00034151	543.283142679016	56.135	0.74327	53.331	53.027	53.77	-2.804	-0.0027621	0.00027224	NaN	39.253	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23460	+		9362	22922	7659	7669							0.012393496039521779
EQVNSAQIW	9	Unmodified	_EQVNSAQIW_					0	0	0			REV__nc|ENSG00000006740|Q17R89-3|ARHGAP44	REV__nc|ENSG00000006740|Q17R89-3|ARHGAP44	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.7835083007812	2	537.764363	1073.51417	-0.27264	-0.00014662	3.2511	0.0017483	2.9784	0.0016017	537.7660478906223	47.499	0.99747	47.499	47.251	48.248	0					33	22	2	0	0	0	0.027353	1	3522	3522		82.241	2.5279	1	560050	+		9363	16424	7660	7670	10290	10290					-0.019643219418185254
EQWKILAPYL	10	Unmodified	_EQWKILAPYL_					0	0	0		ENST00000578529.5_1_18:214628-260326:-|nuORF;ENSG00000079134|ENST00000261600|THOC1	ENST00000578529.5_1_18:214628-260326:-|nuORF	ENST00000578529.5_1_18:214628-260326:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	630.8513793945312	2	630.852981	1259.69141	-4.2078	-0.0026545	-0.47855	-0.0003019	-4.6864	-0.0029564	630.852496591045	154.55	1.1406	153.09	152.8	153.94	-1.4517					82	27	4	0	0	0	0.71192	1	15289	15289		29.15	5.6269	1	266360			9364	1604	7661	7671	10291	10291					0.07195133608320248
EQWLRLSI	8	Unmodified	_EQWLRLSI_					0	0	0		ENST00000358825.9_1_11:129825441-129830819:-|nuORF;ENST00000527581.5_2_11:129817219-129830810:-|nuORF	ENST00000358825.9_1_11:129825441-129830819:-|nuORF	ENST00000358825.9_1_11:129825441-129830819:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.7789916992188	2	522.795466	1043.57638	-0.22226	-0.0001162	1.5536	0.00081223	1.3314	0.00069603	523.2977859398076	72.797	0.1936	72.797	72.684	72.877	0					6	4	2	0	0	0	0.028476	1	7115	7115		104.75	35.96	1	90853			9365	10744	7662	7672	10292	10292					0.056334491971938405
EQWLRLSI	8	Unmodified	_EQWLRLSI_					0	0	0		ENST00000358825.9_1_11:129825441-129830819:-|nuORF;ENST00000527581.5_2_11:129817219-129830810:-|nuORF	ENST00000358825.9_1_11:129825441-129830819:-|nuORF	ENST00000358825.9_1_11:129825441-129830819:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	522.795466	1043.57638	-0.7217	-0.0003773	3.7216	0.0019456	2.9999	0.0015683	522.7977885768289	75.516	0.40754	73.105	72.87	73.278	-2.4106	0.154	0.0011243	NaN	104.75	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7822.5			9366	10744	7662	7672							0.056334491971938405
EQWRDKKL	8	Unmodified	_EQWRDKKL_					0	0	0			REV__ENSG00000136937|ENST00000375147|NCBP1	REV__ENSG00000136937|ENST00000375147|NCBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	552.3048095703125	2	551.803823	1101.59309	0.97705	0.00053914	-0.30345	-0.00016745	0.67359	0.00037169	551.8037775196331	81.546	0.73098	81.546	81.248	81.979	0					52	17	4	0	0	0	0.64371	1	8450	8450		54.776	1.8396	1	7145000	+		9367	19423	7663	7673	10293	10293					0.046359500831158584
EQWRDKKL	8	Unmodified	_EQWRDKKL_					0	0	0			REV__ENSG00000136937|ENST00000375147|NCBP1	REV__ENSG00000136937|ENST00000375147|NCBP1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	551.803823	1101.59309	-1.5033	-0.00082954	-1.5886	-0.00087662	-3.092	-0.0017062	551.8031761012905	84.135	0.94724	81.874	81.611	82.558	-2.261	0.16431	-0.0013042	NaN	54.776	31	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83408	+		9368	19423	7663	7673							0.046359500831158584
EQYAKAFVE	9	Unmodified	_EQYAKAFVE_					0	0	0			REV__tr|A0A553SS93|A0A553SS93_NIACILPXTGcellwallanchordomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02590PE=3SV=1	REV__tr|A0A553SS93|A0A553SS93_NIACILPXTGcellwallanchordomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02590PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.8327026367188	2	542.769114	1083.52368	2.0508	0.0011131	-1.7122	-0.00092932	0.33859	0.00018378	542.7679946017786	92.88	0.58679	92.88	92.635	93.221	0					25	13	3	0	0	0	0.027462	1	10022	10022		42.396	16.822	1	348120	+		9369	30813	7664	7674	10294	10294					-0.014745536562941197
EQYAKAFVE	9	Unmodified	_EQYAKAFVE_					0	0	0			REV__tr|A0A553SS93|A0A553SS93_NIACILPXTGcellwallanchordomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02590PE=3SV=1	REV__tr|A0A553SS93|A0A553SS93_NIACILPXTGcellwallanchordomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02590PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	542.769114	1083.52368	-1.2281	-0.00066655	-0.83708	-0.00045434	-2.0651	-0.0011209	542.7688880244364	95.032	0.55113	92.564	92.16	92.711	-2.4685	-0.1582	0.00081439	NaN	49.442	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15761	+		9370	30813	7664	7674							-0.014745536562941197
ERAFLRKRRNL	11	Unmodified	_ERAFLRKRRNL_					0	0	0			REV__nc|ENSG00000186638|Q5T7B8-4|KIF24	REV__nc|ENSG00000186638|Q5T7B8-4|KIF24	MULTI-MSMS	OvCa9_classI_Rep3	3	487.2916564941406	3	486.963659	1457.86915	-7.2824	-0.0035463	-2.4216	-0.0011792	-9.704	-0.0047255	486.9623381995862	161.08	3.4384	159.71	158.52	161.96	-1.3692					219	70	4	0	0	0	0.72545	1	14132	14132		9.6461	3.3253	1	133400	+		9371	22604	7665	7675	10295	10295					0.15852821650878468
ERAGSNDAVKL	11	Unmodified	_ERAGSNDAVKL_					0	0	0			REV__tr|A0A0J1IDT2|A0A0J1IDT2_NIACILargeribosomalsubunitproteinuL14OS=NialliacirculansOX=1397GN=rplNPE=3SV=1	REV__tr|A0A0J1IDT2|A0A0J1IDT2_NIACILargeribosomalsubunitproteinuL14OS=NialliacirculansOX=1397GN=rplNPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	580.3046264648438	2	580.306926	1158.5993	-0.14076	-8.1684E-05	-3.701	-0.0021477	-3.8417	-0.0022294	580.3047218344606	114.4	0.637	114.4	114.15	114.79	0					33	13	4	0	0	0	0.24327	1	13065	13065		74.165	4.5374	1	1919600	+		9372	29525	7666	7676	10296	10296					0.0263442352400034
ERAKEREKRRK	11	Unmodified	_ERAKEREKRRK_					0	0	0		ENSG00000100813|ENST00000605057|ACIN1;nc|ENSG00000100813|Q9UKV3-5|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1;nc|ENSG00000100813|Q9UKV3-3|ACIN1;nc|ENSG00000100813|Q9UKV3-2|ACIN1	ENSG00000100813|ENST00000605057|ACIN1	ENSG00000100813|ENST00000605057|ACIN1	MULTI-MSMS	OvCa9_classI_Rep2	2	495.9585876464844	3	495.962207	1484.86479	-4.8163	-0.0023887	-2.3422	-0.0011617	-7.1585	-0.0035504	495.96094978154576	162.14	1.4092	161.91	160.94	162.35	-0.22696					77	27	3	0	0	0	0.7257	1	16510	16510		6.3209	0.31984	1	83644			9373	2107	7667	7677	10297	10297					0.14175312437282628
ERAKEREKRRK	11	Unmodified	_ERAKEREKRRK_					0	0	0		ENSG00000100813|ENST00000605057|ACIN1;nc|ENSG00000100813|Q9UKV3-5|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1;nc|ENSG00000100813|Q9UKV3-3|ACIN1;nc|ENSG00000100813|Q9UKV3-2|ACIN1	ENSG00000100813|ENST00000605057|ACIN1	ENSG00000100813|ENST00000605057|ACIN1	MULTI-MSMS	OvCa9_classI_Rep3	3	495.958740234375	3	495.962207	1484.86479	-6.9468	-0.0034453	-0.084622	-4.1969E-05	-7.0314	-0.0034873	495.96210445138047	163.05	2.2058	161.66	160.17	162.38	-1.3926					163	48	5	0	0	0	0.72552	1	14185	14185		8.7993	0	1	227040			9374	2107	7667	7677	10298	10298					0.14175312437282628
ERAKHDQQF	9	Unmodified	_ERAKHDQQF_					0	0	0		ENSG00000205726|ENST00000381318|ITSN1;nc|ENSG00000205726|Q15811-13|ITSN1;nc|ENSG00000205726|Q15811-8|ITSN1;nc|ENSG00000205726|Q15811-9|ITSN1;nc|ENSG00000205726|Q15811-4|ITSN1;ITSN1|p.S1555Tfs*2|1|0.04|ENSG00000205726|chr21:33883659-33883659|G/-|frameshift_variant;ITSN1|p.V1253Sfs*9|1|0.27|ENSG00000205726|chr21:33856831-33856849|GTGAATGACCTGCAGCTGG/-|frameshift_variant;CON__ENSEMBL:ENSBTAP00000001528;nc|ENSG00000205726|Q15811-2|ITSN1;nc|ENSG00000205726|Q15811-7|ITSN1;nc|ENSG00000205726|Q15811-10|ITSN1;nc|ENSG00000205726|Q15811-3|ITSN1;nc|ENSG00000205726|Q15811-11|ITSN1;nc|ENSG00000205726|Q15811-12|ITSN1;nc|ENSG00000205726|Q15811-5|ITSN1;nc|ENSG00000205726|Q15811-6|ITSN1;ITSN1|p.G971Wfs*19|1|0.03|ENSG00000205726|chr21:33818449-33818450|-/T|frameshift_variant;ENST00000470742.5_1_21:35091133-35094274:+|nuORF	ENSG00000205726|ENST00000381318|ITSN1	ENSG00000205726|ENST00000381318|ITSN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.7860107421875	2	579.786161	1157.55777	-0.49429	-0.00028658	-1.61	-0.00093343	-2.1042	-0.00122	579.7849172941892	59.325	1.7794	55.933	55.604	57.383	-3.392					98	35	4	0	0	0	0.53483	1	3961	3961		39.253	2.0937	1	1241800		+	9375	602	7668	7678	10299	10299					-0.014707124446658781
ERALLCFSL	9	Unmodified	_ERALLCFSL_					0	0	0		ENST00000497571.5_1_10:3824338-3827372:-|nuORF;ENST00000380946.3_1_10:3824338-3827351:-|nuORF	ENST00000497571.5_1_10:3824338-3827372:-|nuORF	ENST00000497571.5_1_10:3824338-3827372:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.8036499023438	2	526.283877	1050.5532	-0.53935	-0.00028385	2.1547	0.001134	1.6153	0.00085012	526.2854468415246	80.309	0.40749	77.969	77.861	78.268	-2.3399					9	7	2	0	0	0	0.027462	1	4409	4409		44.117	1.7207	1	21340			9376	12811	7669	7679	10300	10300					0.029946870881985888
ERALTAIALL	10	Unmodified	_ERALTAIALL_					0	0	0		tr|A0A553SP32|A0A553SP32_NIACIChromosomepartitionproteinSmcOS=NialliacirculansOX=1397GN=smcPE=3SV=1	tr|A0A553SP32|A0A553SP32_NIACIChromosomepartitionproteinSmcOS=NialliacirculansOX=1397GN=smcPE=3SV=1	tr|A0A553SP32|A0A553SP32_NIACIChromosomepartitionproteinSmcOS=NialliacirculansOX=1397GN=smcPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.327880859375	2	535.832049	1069.64954	3.0086	0.0016121	-1.243	-0.00066603	1.7656	0.00094607	535.8313518112644	102.42	1.148	102.42	101.87	103.01	0					96	26	5	0	0	0	0.28422	1	11381	11381		82.75	10.873	1	30847000			9377	33998	7670	7680	10301	10301					0.11750577919769967
ERATPRTSL	9	Unmodified	_ERATPRTSL_					0	0	0			REV__ENST00000544786.1_1_22:22162046-22162079:-|nuORF	REV__ENST00000544786.1_1_22:22162046-22162079:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	515.7875366210938	2	515.78563	1029.55671	0.18906	9.7516E-05	3.1338	0.0016164	3.3229	0.0017139	515.7872662216187	78.378	1.3926	76.025	75.698	77.091	-2.3527					57	27	3	0	0	0	0.18193	1	4190	4190		79.451	5.4763	1	1459700	+		9378	27403	7671	7681	10302	10302					0.04311073186431713
ERCSERAPPAP	11	Carbamidomethyl (C)	_ERC(Carbamidomethyl (C))SERAPPAP_	ERC(1)SERAPPAP		ERC(76)SERAPPAP		0	1	0			REV__ENST00000236192.11_1_1:171707599-171711204:-|nuORF	REV__ENST00000236192.11_1_1:171707599-171711204:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	635.3027954101562	2	635.303861	1268.59317	0.1244	7.9032E-05	-1.1596	-0.00073668	-1.0352	-0.00065765	635.3030088624998	47.342	0.60292	47.342	47.121	47.724	0					34	13	3	0	0	0	0.22834	1	3396	3396		76.17	8.676	1	1611400	+		9379	23807	7672	7682	10303	10303	280				-0.030384179791553834
ERCSERAPPAP	11	Carbamidomethyl (C)	_ERC(Carbamidomethyl (C))SERAPPAP_					0	1	0			REV__ENST00000236192.11_1_1:171707599-171711204:-|nuORF	REV__ENST00000236192.11_1_1:171707599-171711204:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	635.303861	1268.59317	0.1244	7.9032E-05	-1.1596	-0.00073668	-1.0352	-0.00065765	635.3030088624998	47.342	0.60292	47.342	47.121	47.724	0	-0.15162	-0.00018322	NaN	76.17	34	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1611400	+		9380	23807	7672	7682			280				-0.030384179791553834
ERCSERAPPAP	11	Carbamidomethyl (C)	_ERC(Carbamidomethyl (C))SERAPPAP_					0	1	0			REV__ENST00000236192.11_1_1:171707599-171711204:-|nuORF	REV__ENST00000236192.11_1_1:171707599-171711204:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	635.303861	1268.59317	-0.81014	-0.00051468	-0.59537	-0.00037824	-1.4055	-0.00089293	635.3033635513148	50.819	0.65934	47.645	47.464	48.123	-3.1734	0.15162	0.00053366	NaN	76.17	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58369	+		9381	23807	7672	7682			280				-0.030384179791553834
ERDGGNWHPW	10	Unmodified	_ERDGGNWHPW_					0	0	0			REV__ENSG00000166866|ENST00000300119|MYO1A	REV__ENSG00000166866|ENST00000300119|MYO1A	MULTI-MSMS	OvCa9_classI_Rep4_	4	627.2745361328125	2	627.275961	1252.53737	0.82367	0.00051667	-3.6669	-0.0023001	-2.8432	-0.0017835	627.2736883095587	33.578	2.7918	30.79	30.259	33.051	-2.7881					159	55	4	0	0	0	0.81992	1	931	931		16.473	1.6083	1	159330	+		9382	21229	7673	7683	10304	10304					-0.07879883104510554
EREKIIKQLNR	11	Unmodified	_EREKIIKQLNR_					0	0	0			REV__nc|ENSG00000197694|Q13813-3|SPTAN1	REV__nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.62249755859375	3	476.287808	1425.8416	0.32315	0.00015391	-0.7176	-0.00034179	-0.39445	-0.00018787	476.2874255337455	22.278	1.0813	20.939	20.675	21.757	-1.3386					78	26	4	0	0	0	0.72511	1	320	320		14.086	2.9893	1	162610	+		9383	29086	7674	7684	10305	10305					0.1457087359997331
EREKKIFEH	9	Unmodified	_EREKKIFEH_					0	0	0		tr|A0A553SQJ9|A0A553SQJ9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07775PE=4SV=1	tr|A0A553SQJ9|A0A553SQJ9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07775PE=4SV=1	tr|A0A553SQJ9|A0A553SQJ9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07775PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	608.3265991210938	2	608.327662	1214.64077	-0.49708	-0.00030239	-3.1213	-0.0018988	-3.6184	-0.0022012	608.3258026969455	25.818	0.89825	25.818	25.594	26.492	0					46	17	5	0	0	0	0.13326	1	607	607		88.177	0.4805	1	1851500			9384	34169	7675	7685	10306	10306					0.04203604283338791
EREKTLEKIYK	11	Unmodified	_EREKTLEKIYK_					0	0	0			REV__ENSG00000261649|ENST00000567390|GOLGA6L7	REV__ENSG00000261649|ENST00000567390|GOLGA6L7	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.60369873046875	3	479.608436	1435.80348	-6.3818	-0.0030608	-3.1485	-0.0015101	-9.5304	-0.0045709	479.60672526006135	162.98	0.90164	161.34	161.01	161.91	-1.6336					63	26	3	0	0	0	0.7252	1	16107	16107		12.957	1.9593	1	61062	+		9385	23570	7676	7686	10307	10307					0.10300942894673426
EREKTLEKIYK	11	Unmodified	_EREKTLEKIYK_					0	0	0			REV__ENSG00000261649|ENST00000567390|GOLGA6L7	REV__ENSG00000261649|ENST00000567390|GOLGA6L7	MULTI-MATCH	OvCa9_classI_Rep3	3		3	479.608436	1435.80348	-6.4472	-0.0030921	-2.9964	-0.0014371	-9.4436	-0.0045292	479.6067710106595	162.49	1.1536	161.12	160.77	161.92	-1.3692	-0.15887	0.00071101	NaN	12.957	51	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50616	+		9386	23570	7676	7686							0.10300942894673426
EREKTLEKIYK	11	Unmodified	_EREKTLEKIYK_					0	0	0			REV__ENSG00000261649|ENST00000567390|GOLGA6L7	REV__ENSG00000261649|ENST00000567390|GOLGA6L7	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		3	479.608436	1435.80348	-6.3818	-0.0030608	-3.1485	-0.0015101	-9.5304	-0.0045709	479.60672526006135	162.98	0.90164	161.34	161.01	161.91	-1.6336	0.06313	0.00049208	NaN	12.957	63	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61062	+		9387	23570	7676	7686							0.10300942894673426
EREQQKRLE	9	Unmodified	_EREQQKRLE_					0	0	0			REV__nc|ENSG00000154310|Q9UKE5-6|TNIK	REV__nc|ENSG00000154310|Q9UKE5-6|TNIK	MULTI-MSMS	OvCa99_classI_Rep5	1	405.8863525390625	3	405.886192	1214.63675	0.55221	0.00022413	-0.74074	-0.00030065	-0.18853	-7.652E-05	405.88591487355274	25.818	0.9994	25.818	25.643	26.642	0					47	19	5	0	0	0	0.18887	1	610	610		78.264	0	1	1699500	+		9388	20378	7677	7687	10308	10308					0.03801514789643079
ERERELKA	8	Unmodified	_ERERELKA_					0	0	0			REV__ENSG00000170788|ENST00000372202|DYDC1	REV__ENSG00000170788|ENST00000372202|DYDC1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.7858276367188	2	515.78563	1029.55671	-0.6533	-0.00033696	0.20441	0.00010543	-0.4489	-0.00023153	515.7856274461861	48.45	0.77907	48.45	48.028	48.807	0					42	17	4	0	0	0	0.66057	1	3554	3554		51.335	3.4199	1	1665900	+		9389	21561	7678	7688	10309	10309					0.04311073186431713
ERERELKA	8	Unmodified	_ERERELKA_					0	0	0			REV__ENSG00000170788|ENST00000372202|DYDC1	REV__ENSG00000170788|ENST00000372202|DYDC1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	515.78563	1029.55671	-0.6533	-0.00033696	0.20441	0.00010543	-0.4489	-0.00023153	515.7856274461861	48.45	0.77907	48.45	48.028	48.807	0	0	0	NaN	51.335	42	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1665900	+		9390	21561	7678	7688							0.04311073186431713
ERERKFLQE	9	Unmodified	_ERERKFLQE_					0	0	0		ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	MULTI-MSMS	OvCa99_classI_Rep5	1	617.8339233398438	2	617.830569	1233.64658	-0.73124	-0.00045179	0.33952	0.00020976	-0.39173	-0.00024202	617.8307734773506	53.656	0.42163	53.656	53.432	53.854	0					26	9	4	0	0	0	0.34132	1	4274	4274		42.396	0	1	926300			9391	6013	7679	7689	10310	10310					0.03910702794996723
ERERRLLLRQS	11	Unmodified	_ERERRLLLRQS_					0	0	0		ENSG00000178395|ENST00000366875|CCDC185	ENSG00000178395|ENST00000366875|CCDC185	ENSG00000178395|ENST00000366875|CCDC185	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.288818359375	3	485.954941	1454.84299	-0.31818	-0.00015462	2.6787	0.0013017	2.3605	0.0011471	486.2905841817927	94.264	1.3929	93.164	92.853	94.246	-1.0995					46	27	3	0	0	0	0.026145	1	8559	8559		12.957	0	1	81163			9392	7752	7680	7690	10311	10311					0.13376507688758466
ERERVVQGATQ	11	Unmodified	_ERERVVQGATQ_					0	0	0		ENSG00000064687|ENST00000263094|ABCA7;nc|ENSG00000064687|Q8IZY2-2|ABCA7	ENSG00000064687|ENST00000263094|ABCA7	ENSG00000064687|ENST00000263094|ABCA7	MULTI-MSMS	OvCa99_classI_Rep5	1	636.8358764648438	2	636.836382	1271.65821	-0.2282	-0.00014533	0.21702	0.00013821	-0.011185	-7.1232E-06	636.836438337325	38.184	0.45726	38.184	37.983	38.44	0					26	9	4	0	0	0	0.61284	1	2149	2149		41.08	0	1	489990			9393	1303	7681	7691	10312	10312					0.03324899818335325
EREWPLQE	8	Unmodified	_EREWPLQE_					0	0	0			REV__ENST00000495319.1_1_9:100819090-100837887:+|nuORF	REV__ENST00000495319.1_1_9:100819090-100837887:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.2958374023438	2	543.764363	1085.51417	-0.39662	-0.00021567	-1.4404	-0.00078326	-1.8371	-0.00099893	543.7632622044009	48.698	0.95458	48.698	48.332	49.287	0					27	21	2	0	0	0	0.028476	1	3620	3620		31.53	13.268	1	134510	+		9394	26744	7682	7692	10313	10313					-0.025163219417891014
EREYISIVIR	10	Unmodified	_EREYISIVIR_					0	0	0			REV__tr|A0A553STR3|A0A553STR3_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_05485PE=4SV=1	REV__tr|A0A553STR3|A0A553STR3_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_05485PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	639.3645629882812	2	639.364244	1276.71394	-4.0344	-0.0025795	2.2611	0.0014457	-1.7733	-0.0011338	639.3655564998056	154.53	1.1695	153.08	152.77	153.94	-1.4516					91	28	4	0	0	0	0.80581	1	15275	15275		18.262	0.79408	1	586460	+		9395	31001	7683	7693	10314	10314					0.08664733005934977
ERFAKERRL	9	Unmodified	_ERFAKERRL_					0	0	0		ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	OvCa99_classI_Rep5	1	602.848876953125	2	602.849096	1203.68364	0.27507	0.00016582	0.14589	8.7947E-05	0.42095	0.00025377	602.8485446121596	32.295	0.59488	32.295	32.105	32.7	0					39	11	6	0	0	0	0.47363	1	1397	1397		45.972	1.5951	1	361590			9396	8684	7684	7694	10315	10315					0.08994419131408904
ERFAQKLEL	9	Unmodified	_ERFAQKLEL_					0	0	0			REV__nc|ENSG00000011451|O95785|WIZ	REV__nc|ENSG00000011451|O95785|WIZ	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3199462890625	2	567.319306	1132.62406	-1.5919	-0.00090313	1.8841	0.0010689	0.29214	0.00016573	567.3204758129912	84.581	1.3452	83.034	82.745	84.091	-1.5462					89	26	5	0	0	0	0.14998	1	7294	7294		84.916	2.675	1	1915100	+		9397	16492	7685	7695	10316	10316					0.06305103397380662
ERFAQKLEL	9	Unmodified	_ERFAQKLEL_					0	0	0			REV__nc|ENSG00000011451|O95785|WIZ	REV__nc|ENSG00000011451|O95785|WIZ	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3200073242188	2	567.319306	1132.62406	-1.2368	-0.00070167	1.2078	0.00068523	-0.028977	-1.6439E-05	567.3201786014721	85.424	2.0958	83.204	82.744	84.84	-2.2204					134	41	5	0	0	0	0.12515	1	5003	5003		90.37	13.052	1	1900400	+		9398	16492	7685	7695	10317	10317					0.06305103397380662
ERFAQKLEL	9	Unmodified	_ERFAQKLEL_					0	0	0			REV__nc|ENSG00000011451|O95785|WIZ	REV__nc|ENSG00000011451|O95785|WIZ	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3213500976562	2	567.319306	1132.62406	1.937	0.0010989	-1.933	-0.0010966	0.00398	2.2579E-06	567.3183195729122	86.015	1.9422	83.369	83.042	84.984	-2.6463					114	38	5	0	0	0	0.1804	1	7246	7246		79.713	2.395	1	2305000	+		9399	16492	7685	7695	10318	10318					0.06305103397380662
ERFRLTKR	8	Unmodified	_ERFRLTKR_					0	0	0			REV__ENSG00000121797|ENST00000399036|CCRL2	REV__ENSG00000121797|ENST00000399036|CCRL2	MULTI-MSMS	OvCa9_classI_Rep2	2	553.331787109375	2	553.333082	1104.65161	-2.8766	-0.0015917	1.5395	0.00085183	-1.3372	-0.00073989	553.3337794849177	152.41	1.17	152.18	151.83	153	-0.22696					55	23	3	0	0	0	0.75723	1	15532	15532		23.042	5.6775	1	86016	+		9400	18558	7686	7696	10319	10319					0.10347051448275124
ERFTIILIT	9	Unmodified	_ERFTIILIT_					0	0	0		tr|A0A7D6VRN2|A0A7D6VRN2_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12850PE=4SV=1	tr|A0A7D6VRN2|A0A7D6VRN2_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12850PE=4SV=1	tr|A0A7D6VRN2|A0A7D6VRN2_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12850PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	553.333740234375	2	553.334424	1104.6543	0.91649	0.00050712	-2.7282	-0.0015096	-1.8117	-0.0010025	553.3328003393297	157.32	1.3723	157.32	157	158.37	0					80	27	4	0	0	0	0.69123	1	18451	18451		20.947	1.8434	1	1199000			9401	34945	7687	7697	10320	10320					0.10615462062582992
ERGGRALH	8	Unmodified	_ERGGRALH_					0	0	0		ENSG00000198142|ENST00000356454|SOWAHC	ENSG00000198142|ENST00000356454|SOWAHC	ENSG00000198142|ENST00000356454|SOWAHC	MULTI-MSMS	OvCa99_classI_Rep5	1	448.2462463378906	2	448.246475	894.478397	0.15114	6.7748E-05	0.023366	1.0474E-05	0.17451	7.8221E-05	448.24628659580435	24.213	0.39917	24.213	24.036	24.436	0					15	7	3	0	0	0	0.73494	1	424	424		34.173	0.65696	1	124730			9402	8789	7688	7698	10321	10321					0.02693685391852796
ERGGRRLAALL	11	Unmodified	_ERGGRRLAALL_					0	0	0			REV__nc|ENSG00000054796|Q9Y5K1-2|SPO11	REV__nc|ENSG00000054796|Q9Y5K1-2|SPO11	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3687744140625	2	606.370195	1210.72584	-1.3399	-0.00081245	0.36309	0.00022017	-0.97677	-0.00059228	606.3703052098949	148.27	2.4393	146.84	145.43	147.87	-1.4351					149	49	5	0	0	0	0.71498	1	14517	14517		24.519	2.8334	1	591330	+		9403	16704	7689	7699	10322	10322					0.12890394539795125
ERGKVNGTI	9	Unmodified	_ERGKVNGTI_					0	0	0		tr|A0A7D6VTI7|A0A7D6VTI7_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_17230PE=3SV=1	tr|A0A7D6VTI7|A0A7D6VTI7_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_17230PE=3SV=1	tr|A0A7D6VTI7|A0A7D6VTI7_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_17230PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	487.2747802734375	2	487.274898	972.535243	-0.61002	-0.00029725	0.41396	0.00020171	-0.19606	-9.5535E-05	487.2749345510685	29.112	0.59899	29.112	28.987	29.586	0					16	11	2	0	0	0	0.48047	1	1016	1016		44.377	8.7589	1	166940			9404	35123	7690	7700	10323	10323					0.047876881577167296
ERGLGGLAGLL	11	Unmodified	_ERGLGGLAGLL_					0	0	0			REV__ENST00000324225.8_1_11:117049861-117050083:+|nuORF	REV__ENST00000324225.8_1_11:117049861-117050083:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	528.3150024414062	2	528.314023	1054.61349	0.053019	2.8011E-05	3.6606	0.0019339	3.7136	0.0019619	528.3157059665655	125.15	1.2365	124.92	124.61	125.85	-0.2359					48	24	3	0	0	0	0.48738	1	12181	12181		54.776	1.4249	1	62834	+		9405	24471	7691	7701	10324	10324					0.08837120742964544
ERGPGLQTTL	10	Unmodified	_ERGPGLQTTL_					0	0	0			REV__nc|ENSG00000188779|P84550-2|SKOR1	REV__nc|ENSG00000188779|P84550-2|SKOR1	MULTI-MSMS	OvCa9_classI_Rep2	2	536.2920532226562	2	536.293288	1070.57202	-0.30313	-0.00016257	0.11156	5.983E-05	-0.19157	-0.00010274	536.2932074237481	71.18	2.1764	68.673	67.727	69.903	-2.5071					94	41	5	0	0	0	0.34811	1	5742	5742		75.043	6.2565	1	684720	+		9406	22736	7692	7702	10325	10325					0.039559399836207376
ERGSPPLL	8	Unmodified	_ERGSPPLL_					0	0	0			REV__ENST00000606557.1_1_20:17949016-17949277:-|nuORF	REV__ENST00000606557.1_1_20:17949016-17949277:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	434.7492980957031	2	434.747985	867.481417	2.0212	0.00087871	0.46541	0.00020234	2.4866	0.001081	434.74810462899137	105.84	0.87653	105.84	105.53	106.41	0					62	19	4	0	0	0	0.58851	1	11929	11929		66.429	10.925	1	7528800	+		9407	25126	7693	7703	10326	10326					0.0423751572599258
ERGWGQPRASP	11	Unmodified	_ERGWGQPRASP_					0	0	0		ENST00000474481.1_1_1:1420233-1421362:+|nuORF;ENST00000485748.5_1_1:1420203-1425183:+|nuORF	ENST00000474481.1_1_1:1420233-1421362:+|nuORF	ENST00000474481.1_1_1:1420233-1421362:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	414.2113037109375	3	414.210899	1239.61087	0.28415	0.0001177	-3.3136	-0.0013725	-3.0295	-0.0012549	414.2094540183585	49.088	5.926	49.088	48.204	54.13	0					277	137	3	0	0	0	0.69589	1	3671	3671		31.068	0.49928	1	1950600			9408	12433	7694	7704	10327	10327					0.0006466533800448815
ERHECGQC	8	Unmodified	_ERHECGQC_					0	0	0		nc|ENSG00000083828|Q9NXT0-3|ZNF586;ENST00000396150.4_1_19:58281140-58291161:+|nuORF;ENSG00000083828|ENST00000396154|ZNF586	nc|ENSG00000083828|Q9NXT0-3|ZNF586	nc|ENSG00000083828|Q9NXT0-3|ZNF586	MULTI-MSMS	OvCa99_classI_Rep5	1	481.1867370605469	2	481.184368	960.354184	0.89048	0.00042848	1.5309	0.00073665	2.4214	0.0011651	481.1849798481635	152.78	0.6925	152.78	152.4	153.1	0					31	17	3	0	0	0	0.75723	1	17881	17881		23.042	3.6825	1	139340			9409	1703	7695	7705	10328	10328					-0.12757896482150954
ERHRRWVRARR	11	Unmodified	_ERHRRWVRARR_					0	0	0			REV__ENSG00000204779|ENST00000377420|FOXD4L5	REV__ENSG00000204779|ENST00000377420|FOXD4L5	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2840576171875	3	526.641802	1576.90358	-0.25236	-0.0001329	0.28925	0.00015233	0.036895	1.9431E-05	526.6421472231351	52.886	1.0419	52.886	52.39	53.432	0					34	23	2	0	0	0	0.026497	1	4141	4141		9.6461	8.2274	1	316690	+		9410	21515	7696	7706	10329	10329					0.1382008258233327
ERHRRWVRARR	11	Unmodified	_ERHRRWVRARR_					0	0	0			REV__ENSG00000204779|ENST00000377420|FOXD4L5	REV__ENSG00000204779|ENST00000377420|FOXD4L5	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.250244140625	3	526.641802	1576.90358	-0.69716	-0.00036715	1.6834	0.00088654	0.98622	0.00051939	526.6424977290357	54.861	0.17394	54.861	54.761	54.935	0					5	3	2	0	0	0	0.026551	1	4453	4453		0.3405	0	1	120440	+		9411	21515	7696	7706	10330	10330					0.1382008258233327
ERIEEQVRL	9	Unmodified	_ERIEEQVRL_					0	0	0			REV__PTPRN|p.K369Rfs*17|1|0.03|ENSG00000054356|chr2:219301608-219301609|-/AAGAGTGAAACTCTGTC|frameshift_variant	REV__PTPRN|p.K369Rfs*17|1|0.03|ENSG00000054356|chr2:219301608-219301609|-/AAGAGTGAAACTCTGTC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	586.3267822265625	2	586.325119	1170.63569	-1.4399	-0.00084423	0.6248	0.00036634	-0.81506	-0.00047789	586.3254692668081	64.097	0.68966	64.097	63.854	64.544	0					30	16	2	0	0	0	0.3076	1	5833	5833		62.107	0	1	3925500	+		9412	29322	7697	7707	10331	10331					0.057193004207192644
ERILRERER	9	Unmodified	_ERILRERER_					0	0	0		nc|ENSG00000125351|Q9BZI7-2|UPF3B;ENSG00000125351|ENST00000276201|UPF3B	nc|ENSG00000125351|Q9BZI7-2|UPF3B	nc|ENSG00000125351|Q9BZI7-2|UPF3B	MULTI-MSMS	OvCa99_classI_Rep5	1	419.57769775390625	3	419.577582	1255.71092	0.23917	0.00010035	-0.70547	-0.000296	-0.46631	-0.00019565	419.5773671089157	33.213	0.9801	33.213	32.844	33.824	0					58	18	6	0	0	0	0.33652	1	1504	1504		65.465	10.743	1	2010900			9413	3700	7698	7708	10332	10332					0.09328902671791184
ERILRGHGADV	11	Unmodified	_ERILRGHGADV_					0	0	0		WDR33|p.D1237Vfs*18|1|0.34|ENSG00000136709|chr2:127708748-127708749|-/GCGATGGAAACCAAAGGTTTCCTTAAGGCAAGCA|frameshift_variant;ENSG00000136709|ENST00000322313|WDR33	WDR33|p.D1237Vfs*18|1|0.34|ENSG00000136709|chr2:127708748-127708749|-/GCGATGGAAACCAAAGGTTTCCTTAAGGCAAGCA|frameshift_variant	WDR33|p.D1237Vfs*18|1|0.34|ENSG00000136709|chr2:127708748-127708749|-/GCGATGGAAACCAAAGGTTTCCTTAAGGCAAGCA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	611.8357543945312	2	611.836185	1221.65782	-0.36818	-0.00022527	0.21185	0.00012962	-0.15633	-9.5648E-05	611.8362406757756	38.136	0.72277	38.136	37.896	38.619	0					45	15	5	0	0	0	0.70848	1	2137	2137		7.8045	0	1	1166600			9414	4504	7699	7709	10333	10333					0.055855248891248266
ERILRQQEE	9	Unmodified	_ERILRQQEE_					0	0	0			REV__ENST00000559238.5_1_15:41060140-41072106:-|nuORF;REV__ENST00000560301.5_1_15:41067690-41071423:-|nuORF	REV__ENST00000559238.5_1_15:41060140-41072106:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	600.8206176757812	2	600.820201	1199.62585	0.10526	6.3244E-05	-0.42325	-0.0002543	-0.31799	-0.00019105	600.8199224951187	47.008	0.61647	47.008	46.762	47.379	0					25	13	2	0	0	0	0.1574	1	3371	3371		58.23	20.418	1	2943100	+		9415	17645;27615	7700	7710	10334	10334					0.03402112415346892
ERIRFLSH	8	Unmodified	_ERIRFLSH_					0	0	0		WDFY3|p.Q3037Rfs*34|1|0.06|ENSG00000163625|chr4:84691725-84691725|T/-|frameshift_variant	WDFY3|p.Q3037Rfs*34|1|0.06|ENSG00000163625|chr4:84691725-84691725|T/-|frameshift_variant	WDFY3|p.Q3037Rfs*34|1|0.06|ENSG00000163625|chr4:84691725-84691725|T/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2694091796875	2	529.298707	1056.58286	2.8314	0.0014987	-1.9514	-0.0010329	0.88	0.00046578	529.2976130755292	89.558	0.78555	89.558	89.275	90.06	0					57	18	4	0	0	0	0.028476	1	9545	9545		35.618	11.416	1	9592900			9416	36302	7701	7711	10335	10335					0.05683387148565089
ERISAVASL	9	Unmodified	_ERISAVASL_					0	0	0		ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.2729187011719	2	473.271824	944.529095	1.1265	0.00053315	-1.5314	-0.00072476	-0.40486	-0.00019161	473.2709210243259	67.006	1.3817	63.516	62.902	64.284	-3.4902					62	27	3	0	0	0	0.13482	1	4901	4901		87.754	0	1	447600			9417	7737	7702	7712	10336	10336					0.054611699261727153
ERISAVASL	9	Unmodified	_ERISAVASL_					0	0	0		ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	MULTI-MATCH	OvCa9_classI_Rep2	2		2	473.271824	944.529095	0.54535	0.0002581	-0.81386	-0.00038517	-0.26851	-0.00012708	473.27121373818414	66.307	1.0432	63.611	63.17	64.213	-2.6958	0.047646	0.00041063	NaN	87.754	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76986			9418	7737	7702	7712							0.054611699261727153
ERISERQRI	9	Unmodified	_ERISERQRI_					0	0	0		ENST00000471079.1_1_X:106358576-106359983:-|nuORF;nc|ENSG00000089682|Q96IZ5-3|RBM41;nc|ENSG00000089682|Q96IZ5-2|RBM41;nc|ENSG00000089682|Q96IZ5|RBM41;ENSG00000089682|ENST00000685964|RBM41	ENST00000471079.1_1_X:106358576-106359983:-|nuORF	ENST00000471079.1_1_X:106358576-106359983:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	593.8362426757812	2	593.836185	1185.65782	-0.52866	-0.00031394	0.63351	0.0003762	0.10485	6.2263E-05	593.8364613696361	25.495	0.65135	25.495	25.192	25.843	0					27	12	3	0	0	0	0.37135	1	575	575		54.776	10.66	1	231070			9419	1825	7703	7713	10337	10337					0.07241524889127504
ERISKPQSK	9	Unmodified	_ERISKPQSK_					0	0	0			REV__nc|ENSG00000058272|O14974-5|PPP1R12A	REV__nc|ENSG00000058272|O14974-5|PPP1R12A	MULTI-MSMS	OvCa9_classI_Rep2	2	536.808349609375	2	536.809105	1071.60366	0.23953	0.00012858	-0.72479	-0.00038907	-0.48525	-0.00026049	536.808594253858	65.887	1.3438	63.191	62.771	64.114	-2.6958					79	26	4	0	0	0	0.37182	1	5119	5119		54.722	5.1863	1	1324500	+		9420	16726	7704	7714	10338	10338					0.07071932737562747
ERKFPKFVSK	10	Unmodified	_ERKFPKFVSK_					0	0	0		nc|ENSG00000163618|Q9ULU8-2|CADPS;nc|ENSG00000163618|Q9ULU8-3|CADPS;ENSG00000163618|ENST00000383710|CADPS;nc|ENSG00000163618|Q9ULU8-4|CADPS;nc|ENSG00000163618|Q9ULU8-5|CADPS	nc|ENSG00000163618|Q9ULU8-2|CADPS	nc|ENSG00000163618|Q9ULU8-2|CADPS	MSMS	OvCa9_classI_Rep4_	4	633.3695678710938	2	633.371872	1264.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	153.89	1	152.44	151.94	152.94	-1.4516								0	0	0	0.13927	1	15235	15235		24.519	0.99649	1				9421	6334	7705	7715	10339	10339					0.10741644593804267
ERKHKEALEDL	11	Unmodified	_ERKHKEALEDL_					0	0	0		NCKAP5|p.S1071Vfs*4|1|0.05|ENSG00000176771|chr2:132783600-132783601|-/C|frameshift_variant;NCKAP5|p.P1518Qfs*3|1|0.11|ENSG00000176771|chr2:132782258-132782258|G/-|frameshift_variant;ENSG00000176771|ENST00000409261|NCKAP5;nc|ENSG00000176771|O14513-3|NCKAP5;nc|ENSG00000176771|O14513-2|NCKAP5	NCKAP5|p.S1071Vfs*4|1|0.05|ENSG00000176771|chr2:132783600-132783601|-/C|frameshift_variant	NCKAP5|p.S1071Vfs*4|1|0.05|ENSG00000176771|chr2:132783600-132783601|-/C|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	456.5806579589844	3	456.580769	1366.72048	-0.75746	-0.00034584	-0.00032616	-1.4892E-07	-0.75779	-0.00034599	456.5808028026354	28.016	1.3955	28.016	27.791	29.186	0					74	27	6	0	0	0	0.66539	1	870	870		38.714	0	1	4052500			9422	7627	7706	7716	10340	10340					0.0517862616666207
ERKKRDGLWLH	11	Unmodified	_ERKKRDGLWLH_					0	0	0		ENST00000432071.1_1_2:85808896-85809064:+|nuORF	ENST00000432071.1_1_2:85808896-85809064:+|nuORF	ENST00000432071.1_1_2:85808896-85809064:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.78863525390625	3	479.940632	1436.80007	0.06764	3.2463E-05	-0.89953	-0.00043172	-0.83188	-0.00039926	479.9397824517707	78.784	0.8018	76.032	75.761	76.562	-2.7514					28	16	3	0	0	0	0.026221	1	6344	6344		25.126	15.022	1	70532			9423	11804	7707	7717	10341	10341					0.09913737631313779
ERKLNVVL	8	Unmodified	_ERKLNVVL_					0	0	0		ENST00000502773.5_1_4:157683941-157684070:-|nuORF	ENST00000502773.5_1_4:157683941-157684070:-|nuORF	ENST00000502773.5_1_4:157683941-157684070:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.806884765625	2	485.805834	969.597115	0.15988	7.767E-05	-0.35175	-0.00017088	-0.19187	-9.3214E-05	485.8056035069245	57.042	1.5758	53.697	52.97	54.546	-3.3449					85	30	4	0	0	0	0.59148	1	3679	3679		65.803	16.362	1	643660			9424	12855	7708	7718	10342	10342					0.11110039576851705
ERKLRTLL	8	Unmodified	_ERKLRTLL_					0	0	0		ENST00000403714.7_1_2:25377570-25377759:+|nuORF	ENST00000403714.7_1_2:25377570-25377759:+|nuORF	ENST00000403714.7_1_2:25377570-25377759:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	514.833740234375	2	514.832383	1027.65021	2.1167	0.0010897	0.089454	4.6054E-05	2.2061	0.0011358	514.8322524936979	84.113	0.67072	84.113	83.841	84.512	0					36	15	3	0	0	0	0.56195	1	8777	8777		71.296	0	1	3174400			9425	11445	7709	7719	10343	10343					0.13749417359531435
ERKRFIPE	8	Unmodified	_ERKRFIPE_					0	0	0			REV__nc|ENSG00000161180|Q8IYX3-1|CCDC116	REV__nc|ENSG00000161180|Q8IYX3-1|CCDC116	MULTI-MSMS	OvCa9_classI_Rep3	3	537.8047485351562	2	537.806365	1073.59818	0.74795	0.00040225	-1.1427	-0.00061458	-0.3948	-0.00021233	537.8056008711688	74.166	1.976	71.679	71.275	73.251	-2.4873					107	39	4	0	0	0	0.61436	1	3656	3656		60.972	0.85368	1	604710	+		9426	20690	7710	7720	10344	10344					0.06432253945763478
ERLASRGLLI	10	Unmodified	_ERLASRGLLI_					0	0	0			REV__nc|ENSG00000095319|Q5SRE5-2|NUP188	REV__nc|ENSG00000095319|Q5SRE5-2|NUP188	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.8289184570312	2	564.348397	1126.68224	0.089853	5.0708E-05	0.24599	0.00013883	0.33585	0.00018953	564.3486339892703	68.54	0.54395	68.54	68.356	68.9	0					22	12	3	0	0	0	0.026577	1	6481	6481		77.318	3.0625	1	497280	+		9427	17287	7711	7721	10345	10345					0.12396785042687952
ERLDQNQR	8	Unmodified	_ERLDQNQR_					0	0	0			REV__ENST00000512987.1_1_22:23735173-23735854:+|nuORF	REV__ENST00000512987.1_1_22:23735173-23735854:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8202514648438	2	529.770511	1057.52647	-0.3662	-0.000194	4.1955	0.0022226	3.8293	0.0020286	529.7727035944597	44.781	0.62803	44.781	44.44	45.068	0					18	13	2	0	0	0	0.028476	1	3071	3071		31.955	14.59	1	220930	+		9428	26974	7712	7722	10346	10346					7.145212293835357E-06
ERLHKRVTE	9	Unmodified	_ERLHKRVTE_					0	0	0		ENSG00000152413|ENST00000334082|HOMER1	ENSG00000152413|ENST00000334082|HOMER1	ENSG00000152413|ENST00000334082|HOMER1	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3330078125	2	584.333279	1166.652	-0.83617	-0.0004886	0.86808	0.00050725	0.031911	1.8647E-05	584.3338231558395	21.184	1.6832	19.846	19.548	21.231	-1.3386					110	33	5	0	0	0	0.37135	1	194	194		54.776	10.399	1	1661100			9429	5621	7713	7723	10347	10347					0.07534426377469572
ERLISELIV	9	Unmodified	_ERLISELIV_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.3253784179688	2	536.324057	1070.63356	-0.91686	-0.00049173	3.1607	0.0016951	2.2438	0.0012034	536.3257159788187	121.94	0.92113	120.59	120.31	121.23	-1.3479					38	17	3	0	0	0	0.38529	1	11504	11504		53.351	2.016	1	82568	+		9430	22731	7714	7724	10348	10348					0.10106871682887686
ERLISELIV	9	Unmodified	_ERLISELIV_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	536.324057	1070.63356	-1.8971	-0.0010175	4.5196	0.002424	2.6225	0.0014065	536.326377294027	120.63	0.88834	120.43	120.21	121.1	-0.19718	-0.094568	0.0022094	NaN	53.351	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65682	+		9431	22731	7714	7724							0.10106871682887686
ERLISELIV	9	Unmodified	_ERLISELIV_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	536.324057	1070.63356	2.3611	0.0012663	-0.71685	-0.00038447	1.6442	0.00088182	536.3236891394331	121.59	0.99433	120.56	120.22	121.22	-1.0286	0.034049	-0.0034075	NaN	53.351	45	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81078	+		9432	22731	7714	7724							0.10106871682887686
ERLKAVLQEVK	11	Unmodified	_ERLKAVLQEVK_					0	0	0		tr|A0A553SFM6|A0A553SFM6_NIACIChaperoneproteinClpBOS=NialliacirculansOX=1397GN=clpBPE=3SV=1	tr|A0A553SFM6|A0A553SFM6_NIACIChaperoneproteinClpBOS=NialliacirculansOX=1397GN=clpBPE=3SV=1	tr|A0A553SFM6|A0A553SFM6_NIACIChaperoneproteinClpBOS=NialliacirculansOX=1397GN=clpBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	438.25335693359375	3	438.269755	1311.78744	0.74482	0.00032643	-0.48614	-0.00021306	0.25867	0.00011337	438.2688954806207	42.948	0.21692	42.948	42.753	42.97	0					6	4	2	0	0	0	0.025722	1	2782	2782		16.53	0	1	23372			9433	33053	7715	7725	10349	10349					0.14401281448385816
ERLLALFKSLA	11	Unmodified	_ERLLALFKSLA_					0	0	0		ENSG00000255151|ENST00000527482|GLYATL1B	ENSG00000255151|ENST00000527482|GLYATL1B	ENSG00000255151|ENST00000527482|GLYATL1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	630.8150634765625	2	630.887355	1259.76016	2.4246	0.0015296	-0.020654	-1.3031E-05	2.4039	0.0015166	630.8873268095375	95.301	0.70769	95.301	95.119	95.826	0					30	16	3	0	0	0	0.025344	1	10423	10423		41.427	17.224	1	800060			9434	9452	7716	7726	10350	10350					0.1406679790804901
ERLNLSSFN	9	Unmodified	_ERLNLSSFN_					0	0	0			REV__VIM|p.P416L|1|0.15|ENSG00000026025|chr10:17235863-17235863|C/T|missense_variant	REV__VIM|p.P416L|1|0.15|ENSG00000026025|chr10:17235863-17235863|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	540.281494140625	2	540.277638	1078.54072	1.0777	0.00058227	2.4244	0.0013098	3.5021	0.0018921	540.2790209230245	130.13	0.98888	129.02	128.78	129.77	-1.1121					38	19	3	0	0	0	0.44568	1	10314	10314		47.657	3.2801	1	43444	+		9435	16571	7717	7727	10351	10351					0.00459366949530704
ERLPGLGATP	10	Unmodified	_ERLPGLGATP_					0	0	0			REV__RIN3|p.L691Dfs*13|1|0.14|ENSG00000100599|chr14:92659203-92659204|-/AGATAAGATGATGGCGTATATGTTTTCAGGAATAG|frameshift_variant	REV__RIN3|p.L691Dfs*13|1|0.14|ENSG00000100599|chr14:92659203-92659204|-/AGATAAGATGATGGCGTATATGTTTTCAGGAATAG|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	505.7856140136719	2	505.785099	1009.55564	2.4278	0.0012279	0.20037	0.00010134	2.6281	0.0013293	505.7848700794305	80.478	0.83648	80.478	80.074	80.91	0					44	19	3	0	0	0	0.6104	1	8256	8256		40.778	1.972	1	1040600	+		9436	17435	7718	7728	10352	10352					0.05124858817509903
ERLQNAVHKPL	11	Unmodified	_ERLQNAVHKPL_					0	0	0			REV__ENST00000389600.6_1_13:51590304-51594849:-|nuORF	REV__ENST00000389600.6_1_13:51590304-51594849:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.26251220703125	3	435.585966	1303.73607	-0.02963	-1.2906E-05	-0.19968	-8.6977E-05	-0.22931	-9.9883E-05	435.5858151603805	65.48	0.96999	61.995	61.743	62.713	-3.4854					29	19	2	0	0	0	0.025404	1	4694	4694		38.714	12.651	1	98310	+		9437	25229	7719	7729	10353	10353					0.09634957474372641
ERLQRQNEG	9	Unmodified	_ERLQRQNEG_					0	0	0		tr|A0A7D6VSP1|A0A7D6VSP1_9CLOTProteinadenylyltransferaseSelOOS=ClostridiumintestinaleOX=36845GN=selOPE=3SV=1	tr|A0A7D6VSP1|A0A7D6VSP1_9CLOTProteinadenylyltransferaseSelOOS=ClostridiumintestinaleOX=36845GN=selOPE=3SV=1	tr|A0A7D6VSP1|A0A7D6VSP1_9CLOTProteinadenylyltransferaseSelOOS=ClostridiumintestinaleOX=36845GN=selOPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.2653198242188	2	565.289068	1128.56358	2.2527	0.0012734	-3.2516	-0.0018381	-0.99892	-0.00056468	565.7874061552732	87.185	0.65613	87.185	86.972	87.628	0					25	15	2	0	0	0	0.027462	1	9264	9264		45.972	7.1661	1	908050			9438	35044	7720	7730	10354	10354					0.004443860669653077
ERLSENIIR	9	Unmodified	_ERLSENIIR_					0	0	0			REV__ENST00000558070.1_1_15:31352716-31354937:-|nuORF	REV__ENST00000558070.1_1_15:31352716-31354937:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	565.3223266601562	2	565.319837	1128.62512	0.58024	0.00032802	-1.3689	-0.00077384	-0.78862	-0.00044582	565.3188203134224	58.008	0.46185	58.008	57.775	58.237	0					21	10	3	0	0	0	0.29519	1	4910	4910		63.534	0	1	1042900	+		9439	27583	7721	7731	10355	10355					0.06595317766277731
ERLSENIIR	9	Unmodified	_ERLSENIIR_					0	0	0			REV__ENST00000558070.1_1_15:31352716-31354937:-|nuORF	REV__ENST00000558070.1_1_15:31352716-31354937:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	565.319837	1128.62512	0.58024	0.00032802	-1.3689	-0.00077384	-0.78862	-0.00044582	565.3188203134224	58.008	0.46185	58.008	57.775	58.237	0	-0.19084	-0.0016176	NaN	63.534	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1042900	+		9440	27583	7721	7731							0.06595317766277731
ERLSFLIR	8	Unmodified	_ERLSFLIR_					0	0	0			REV__tr|A0A7D6ZHM8|A0A7D6ZHM8_9CLOTUPF0182proteinHZF06_00075OS=ClostridiumintestinaleOX=36845GN=HZF06_00075PE=3SV=1	REV__tr|A0A7D6ZHM8|A0A7D6ZHM8_9CLOTUPF0182proteinHZF06_00075OS=ClostridiumintestinaleOX=36845GN=HZF06_00075PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	517.311279296875	2	517.311284	1032.60801	0.010128	5.2392E-06	-0.21635	-0.00011192	-0.20622	-0.00010668	517.3110169376656	31.938	1.2365	29.228	28.986	30.222	-2.7097					60	24	4	0	0	0	0.74992	1	1056	1056		26.693	1.2427	1	305470	+		9441	32031	7722	7732	10356	10356					0.09301441951129163
ERLTRSIV	8	Unmodified	_ERLTRSIV_					0	0	0			REV__ENSG00000142621|ENST00000688493|FHAD1	REV__ENSG00000142621|ENST00000688493|FHAD1	MULTI-MSMS	OvCa9_classI_Rep2	2	487.2928466796875	2	487.293091	972.571629	-0.52558	-0.00025611	0.38237	0.00018633	-0.14321	-6.9784E-05	487.2931902266913	39.338	1.0419	36.628	36.41	37.452	-2.7097					39	20	3	0	0	0	0.70469	1	1915	1915		42.396	6.7778	1	118040	+		9442	19796	7723	7733	10357	10357					0.08424565054428967
ERLVVYVIN	9	Unmodified	_ERLVVYVIN_					0	0	0			REV__tr|A0A7D6VPF9|A0A7D6VPF9_9CLOTRepressorLexAOS=ClostridiumintestinaleOX=36845GN=lexAPE=3SV=1	REV__tr|A0A7D6VPF9|A0A7D6VPF9_9CLOTRepressorLexAOS=ClostridiumintestinaleOX=36845GN=lexAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.8235473632812	2	552.824224	1103.63389	-0.65284	-0.00036091	0.20079	0.000111	-0.45206	-0.00024991	552.8241738200417	127.6	1.5781	126.16	125.89	127.47	-1.4357					69	30	3	0	0	0	0.22621	1	12198	12198		71.877	13.096	1	306030	+		9443	31245	7724	7734	10358	10358					0.08622291402775772
ERMKKKKKKKK	11	Unmodified	_ERMKKKKKKKK_					0	0	0			REV__L1MD1_dup3486|chr9:6488282-6488529:-|1.1290293695577864|0.0199908630641251|5.82|429.0|13|2|anti-sense	REV__L1MD1_dup3486|chr9:6488282-6488529:-|1.1290293695577864|0.0199908630641251|5.82|429.0|13|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.3116760253906	3	487.325429	1458.95446	-0.030667	-1.4945E-05	0.11003	5.3619E-05	0.07936	3.8674E-05	487.6603317584693	32.095	0.34743	32.095	31.906	32.254	0					8	6	2	0	0	0	0.026538	1	1387	1387		5.6988	2.2901	1	12327	+		9444	28432	7725	7735	10359	10359					0.24333850792299927
ERNDLLIRK	9	Unmodified	_ERNDLLIRK_					0	0	0			REV__ENST00000481482.5_1_7:138818528-138853308:+|nuORF	REV__ENST00000481482.5_1_7:138818528-138853308:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.8453369140625	2	578.843479	1155.67241	-1.0438	-0.00060419	0.44813	0.0002594	-0.59565	-0.00034479	578.8436496875265	63.287	1.4016	59.812	59.48	60.882	-3.475					59	28	4	0	0	0	0.42576	1	4445	4445		49.536	1.5765	1	302200	+		9445	17767	7726	7736	10360	10360					0.10079597037270105
ERNDLLIRK	9	Unmodified	_ERNDLLIRK_					0	0	0			REV__ENST00000481482.5_1_7:138818528-138853308:+|nuORF	REV__ENST00000481482.5_1_7:138818528-138853308:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	578.843479	1155.67241	-2.2343	-0.0012933	1.5991	0.00092561	-0.63527	-0.00036772	578.8443365120079	62.369	1.539	59.61	59.236	60.775	-2.7593	-0.10104	0.00053551	NaN	49.536	81	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202270	+		9446	17767	7726	7736							0.10079597037270105
ERNDLLIRK	9	Unmodified	_ERNDLLIRK_					0	0	0			REV__ENST00000481482.5_1_7:138818528-138853308:+|nuORF	REV__ENST00000481482.5_1_7:138818528-138853308:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	578.843479	1155.67241	-1.0438	-0.00060419	0.44813	0.0002594	-0.59565	-0.00034479	578.8436496875265	63.287	1.4016	59.812	59.48	60.882	-3.475	0.10104	-0.00079691	NaN	49.536	59	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302200	+		9447	17767	7726	7736							0.10079597037270105
ERNLHVSL	8	Unmodified	_ERNLHVSL_					0	0	0		ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ	ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	MULTI-MSMS	OvCa9_classI_Rep2	2	484.26910400390625	2	484.269616	966.524678	-0.97487	-0.0004721	0.71113	0.00034438	-0.26374	-0.00012772	484.26987122252336	49.254	1.4869	46.494	45.779	47.266	-2.7603					73	29	3	0	0	0	0.73938	1	3097	3097		31.955	1.4512	1	266680			9448	8802	7727	7737	10361	10361					0.04007705503283887
ERNNVLER	8	Unmodified	_ERNNVLER_					0	0	0			REV__tr|A0A553SPB0|A0A553SPB0_NIACIPatatinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_26055PE=4SV=1	REV__tr|A0A553SPB0|A0A553SPB0_NIACIPatatinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_26055PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.7976684570312	2	515.275429	1028.53631	-1.0085	-0.00051964	3.7067	0.00191	2.6982	0.0013903	515.2766294501656	49.571	0.6541	49.571	49.245	49.899	0					17	14	2	0	0	0	0.028476	1	3694	3694		45.972	19.279	1	125660	+		9449	30519	7728	7738	10362	10362					0.023179025266244935
ERNVALREAE	10	Unmodified	_ERNVALREAE_					0	0	0		nc|ENSG00000160299|O95613-2|PCNT;ENSG00000160299|ENST00000359568|PCNT;PCNT|p.A2734Qfs*36|1|0.3|ENSG00000160299|chr21:46431663-46431664|-/CAGAA|frameshift_variant;PCNT|p.L2733Qfs*43|1|0.43|ENSG00000160299|chr21:46431661-46431662|-/AGAGCAAGAGAAGGCAAACAGCG|frameshift_variant	nc|ENSG00000160299|O95613-2|PCNT	nc|ENSG00000160299|O95613-2|PCNT	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.7926635742188	2	593.812376	1185.6102	1.5938	0.00094643	-1.3281	-0.00078864	0.26572	0.00015779	593.8113355698733	147.92	0.77295	147.92	147.31	148.08	0					18	15	2	0	0	0	0.026522	1	17262	17262		56.434	6.9922	1	36149			9450	6056	7729	7739	10363	10363					0.024818258982804764
ERNVWKQTL	9	Unmodified	_ERNVWKQTL_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	587.3184204101562	2	587.32238	1172.63021	-0.82133	-0.00048239	0.096239	5.6523E-05	-0.72509	-0.00042586	587.3217905140243	63.367	0.96381	59.892	59.193	60.156	-3.475					34	19	3	0	0	0	0.21231	1	4456	4456		74.255	5.4682	1	228730	+		9451	28906	7730	7740	10364	10364					0.05079621628897257
ERNVYKVNRN	10	Unmodified	_ERNVYKVNRN_					0	0	0			REV__PPP1R3A|p.D306Y|1|0.16|ENSG00000154415|chr7:113882089-113882089|C/A|missense_variant	REV__PPP1R3A|p.D306Y|1|0.16|ENSG00000154415|chr7:113882089-113882089|C/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	646.3465576171875	2	646.346917	1290.67928	-1.2412	-0.00080222	1.3606	0.00087943	0.11946	7.7212E-05	646.3477237536227	39.942	1.5339	37.233	37.002	38.536	-2.7097					82	30	4	0	0	0	0.69928	1	2010	2010		32.812	16.339	1	358920	+		9452	29314	7731	7741	10365	10365					0.04556909917846497
ERPCPFGLLIF	11	Unmodified	_ERPCPFGLLIF_					0	0	0			REV__ENSG00000196832|ENST00000641879|OR11G2	REV__ENSG00000196832|ENST00000641879|OR11G2	MULTI-MSMS	OvCa9_classI_Rep2	2	431.233642578125	3	431.233765	1290.67946	-0.65762	-0.00028359	0.30031	0.00012951	-0.35731	-0.00015408	431.23389730645385	39.936	1.5833	37.227	36.953	38.536	-2.7097					108	31	5	0	0	0	0.58642	1	1983	1983		45.908	7.194	1	918010	+		9453	22866	7732	7742	10366	10366					0.045751935934958965
ERPGTNPL	8	Unmodified	_ERPGTNPL_					0	0	0			REV__ENST00000442257.1_1_13:31115827-31115971:-|nuORF	REV__ENST00000442257.1_1_13:31115827-31115971:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	442.2347106933594	2	442.235242	882.45593	0.32938	0.00014566	-0.3863	-0.00017083	-0.056917	-2.5171E-05	442.2349881641812	53.455	1.2924	50.641	50.28	51.573	-2.8139					56	25	3	0	0	0	0.64026	1	3628	3628		55.504	0	1	308550	+		9454	25852	7733	7743	10367	10367					0.01000041203553792
ERPMTSPHF	9	Unmodified	_ERPMTSPHF_					0	0	0		ENST00000545135.5_1_12:124428798-124428876:-|nuORF;ENST00000544798.2_1_12:124408671-124428876:-|nuORF	ENST00000545135.5_1_12:124428798-124428876:-|nuORF	ENST00000545135.5_1_12:124428798-124428876:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	551.7640380859375	2	551.260933	1100.50731	0.58019	0.00031984	1.518	0.00083679	2.0981	0.0011566	551.2615379072513	140.3	0.95155	140.3	139.78	140.73	0					34	19	3	0	0	0	0.65371	1	16393	16393		25.574	0	1	104550			9455	13510	7734	7744	10368	10368					-0.038919580940500964
ERPPLTSLSF	10	Unmodified	_ERPPLTSLSF_					0	0	0		ENST00000393614.8_1_1:110527389-110528040:+|nuORF	ENST00000393614.8_1_1:110527389-110528040:+|nuORF	ENST00000393614.8_1_1:110527389-110528040:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	573.8097534179688	2	573.811313	1145.60807	0.5025	0.00028834	-3.0806	-0.0017677	-2.5781	-0.0014793	573.8094810404443	35.265	1.099	32.416	32.19	33.288	-2.849					55	21	4	0	0	0	0.50999	1	1137	1137		52.937	1.6012	1	251670			9456	11250	7735	7745	10369	10369					0.041093971604595936
ERQIQERMK	9	Unmodified	_ERQIQERMK_					0	0	0			REV__nc|ENSG00000110693|P35712-3|SOX6	REV__nc|ENSG00000110693|P35712-3|SOX6	MULTI-MSMS	OvCa99_classI_Rep5	1	609.3223876953125	2	609.324596	1216.63464	-0.11728	-7.1461E-05	-4.0741	-0.0024824	-4.1914	-0.0025539	609.3219373939672	49.012	0.53059	49.012	48.675	49.206	0					26	11	3	0	0	0	0.3249	1	3626	3626		60.118	0	1	709990	+		9457	17995	7736	7746	10370	10370					0.034987627801456256
ERQKGGLHMQ	10	Unmodified	_ERQKGGLHMQ_					0	0	0			REV__ENSG00000142677|ENST00000270800|IL22RA1	REV__ENSG00000142677|ENST00000270800|IL22RA1	MULTI-MSMS	OvCa9_classI_Rep2	2	592.3016357421875	2	592.303664	1182.59277	-0.076132	-4.5093E-05	-4.396	-0.0026038	-4.4722	-0.0026489	592.3012086760319	80.961	1.31	79.312	78.765	80.075	-1.6485					94	25	6	0	0	0	0.50873	1	6876	6876		53.089	12.311	1	1420500	+		9458	19802	7737	7747	10371	10371					0.008782070916367957
ERQKLKSRLEK	11	Unmodified	_ERQKLKSRLEK_					0	0	0		nc|ENSG00000164304|Q8TC20-2|CAGE1;nc|ENSG00000164304|Q8TC20-4|CAGE1;nc|ENSG00000164304|Q8TC20|CAGE1;nc|ENSG00000164304|Q8TC20-3|CAGE1;ENSG00000164304|ENST00000502583|CAGE1	nc|ENSG00000164304|Q8TC20-2|CAGE1	nc|ENSG00000164304|Q8TC20-2|CAGE1	MULTI-MSMS	OvCa9_classI_Rep3	3	472.2829895019531	3	472.287808	1413.8416	-6.0447	-0.0028549	-2.5284	-0.0011941	-8.5731	-0.004049	472.28675973301637	159.08	3.3809	157.81	156.71	160.09	-1.267					177	72	4	0	0	0	0.72497	2	13752	13752;13783		15.921	1.8346	1	110830			9459	6441	7738	7748	10372;10373	10372					0.15122873599989362
ERQKNLRELL	10	Unmodified	_ERQKNLRELL_					0	0	0			REV__MYNN|p.H9P|1|0.12|ENSG00000085274|chr3:169774321-169774321|A/C|missense_variant	REV__MYNN|p.H9P|1|0.12|ENSG00000085274|chr3:169774321-169774321|A/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	433.2672424316406	3	433.589487	1297.74663	0.85234	0.00036957	1.9686	0.00085355	2.8209	0.0012231	433.59036095325143	75.426	0.53452	72.275	72.043	72.578	-3.151					17	10	2	0	0	0	0.027142	1	5920	5920		27.047	0	1	18416	+		9460	17131	7739	7749	10374	10374					0.10966940128810165
ERQKNLRELL	10	Unmodified	_ERQKNLRELL_					0	0	0			REV__MYNN|p.H9P|1|0.12|ENSG00000085274|chr3:169774321-169774321|A/C|missense_variant	REV__MYNN|p.H9P|1|0.12|ENSG00000085274|chr3:169774321-169774321|A/C|missense_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		3	433.589487	1297.74663	0.0072418	3.14E-06	2.9198	0.001266	2.9271	0.0012691	433.59053843716725	74.818	0.82682	72.408	72.043	72.87	-2.4106	0.066555	0.00058091	NaN	27.047	27	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18333	+		9461	17131	7739	7749							0.10966940128810165
ERQLAAPE	8	Unmodified	_ERQLAAPE_					0	0	0			REV__nc|ENSG00000176155|Q2TAC2-2|CCDC57	REV__nc|ENSG00000176155|Q2TAC2-2|CCDC57	MULTI-MSMS	OvCa99_classI_Rep5	1	457.2421569824219	2	457.240524	912.466495	-0.48723	-0.00022278	0.59039	0.00026995	0.10316	4.7169E-05	457.24064758282594	59.127	2.0507	59.127	58.892	60.943	0					102	51	4	0	0	0	0.53252	1	5117	5117		74.255	5.7703	1	11088000	+		9462	21934	7740	7750	10375	10375					0.006760238579886391
ERQRKYLSL	9	Unmodified	_ERQRKYLSL_					0	0	0		nc|ENSG00000257923|P39880-9|CUX1;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENST00000560541.5_1_7:101556607-101926379:+|nuORF;ENST00000487284.2_1_7:101917466-101926379:+|nuORF	nc|ENSG00000257923|P39880-9|CUX1	nc|ENSG00000257923|P39880-9|CUX1	MULTI-SECPEP	OvCa9_classI_Rep2	2	596.3052368164062	2	596.843479	1191.67241	-1.6827	-0.0010043	1.3403	0.00079997	-0.34238	-0.00020435	596.8441480557376	52.286	0.74176	49.474	49.146	49.888	-2.8129					31	14	3	0	0	0	0.027462	1	3438	3438		25.574	9.1009	1	38272			9463	13706	7741	7751	10376	10376					0.08423597037290165
ERQSAQHNTE	10	Unmodified	_ERQSAQHNTE_					0	0	0			REV__chrX:53176622-53179745|352|11.66|0.0|20.15|-|0|KDM5C,KDM5C|3	REV__chrX:53176622-53179745|352|11.66|0.0|20.15|-|0|KDM5C,KDM5C|3	MULTI-MSMS	OvCa9_classI_Rep4_	4	600.2767944335938	2	600.273615	1198.53268	-5.913	-0.0035494	3.296	0.0019785	-2.617	-0.0015709	600.2754165352742	160.39	2.7294	158.78	158.34	161.07	-1.6101					180	65	4	0	0	0	0.75313	1	16032	16032		24.519	4.5224	1	309270	+		9464	16140	7742	7752	10377	10377					-0.058648120378848034
ERQTKLQNI	9	Unmodified	_ERQTKLQNI_					0	0	0			REV__ENSG00000066117|ENST00000394963|SMARCD1	REV__ENSG00000066117|ENST00000394963|SMARCD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.7998046875	2	565.319837	1128.62512	0.3801	0.00021488	-0.6239	-0.0003527	-0.2438	-0.00013783	565.3193598901366	31.737	1.192	31.737	31.361	32.553	0					48	23	3	0	0	0	0.027447	1	1360	1360		66.429	6.1353	1	690620	+		9465	16809	7743	7753	10378	10378					0.06595317766277731
ERREKRRKQL	10	Unmodified	_ERREKRRKQL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	OvCa9_classI_Rep3	3	466.9522399902344	3	466.951531	1397.83276	1.5916	0.00074322	-0.097446	-4.5502E-05	1.4942	0.00069772	466.9514863874782	62.714	2.1935	59.681	59.362	61.555	-3.0339					129	43	5	0	0	0	0.5635	2	2283	2283;2294		46.457	0.54867	1	504980			9466	1754	7744	7754	10379;10380	10379					0.14975944754178272
ERRFKDRRRRD	11	Unmodified	_ERRFKDRRRRD_					0	0	0			REV__nc|ENSG00000087087|Q9BXP5-5|SRRT	REV__nc|ENSG00000087087|Q9BXP5-5|SRRT	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.262939453125	3	530.632972	1588.87709	1.8666	0.00099049	2.157	0.0011446	4.0236	0.002135	530.6338710769179	90.591	0.86934	90.591	90.228	91.098	0					30	21	2	0	0	0	0.026416	1	9736	9736		16.53	15.111	1	425960	+		9467	17156	7745	7755	10381	10381					0.1062034890032919
ERRGRGRVPR	10	Unmodified	_ERRGRGRVPR_					0	0	0			REV__SVA_B_dup173|chr4:48185818-48187447:+|1.7426897649738875|0.0421009603888101|5.37|413.0|57|2|anti-sense	REV__SVA_B_dup173|chr4:48185818-48187447:+|1.7426897649738875|0.0421009603888101|5.37|413.0|57|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8682861328125	2	619.868686	1237.72282	-3.1194	-0.0019336	4.2095	0.0026093	1.0901	0.00067571	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.73378	1	15022	15022		26.693	1.2427	1	806750	+		9468	29470	7746	7756	10382	10382					0.11346564205632603
ERRIPRLWR	9	Unmodified	_ERRIPRLWR_					0	0	0		nc|ENSG00000116299|Q6UXG2-3|ELAPOR1;nc|ENSG00000116299|Q6UXG2-2|ELAPOR1;nc|ENSG00000116299|Q6UXG2-4|ELAPOR1;ENSG00000116299|ENST00000369939|ELAPOR1	nc|ENSG00000116299|Q6UXG2-3|ELAPOR1	nc|ENSG00000116299|Q6UXG2-3|ELAPOR1	MSMS	OvCa9_classI_Rep4_	4	641.3811645507812	2	641.38618	1280.75781	NaN	NaN	NaN	NaN	NaN	NaN	NaN	162.48	1	160.86	160.36	161.36	-1.6239								0	0	0	0.24372	1	16060	16060		19.36	1.0979	1				9469	3173	7747	7757	10383	10383					0.12865807013577069
ERRKRLLERQF	11	Unmodified	_ERRKRLLERQF_					0	0	0			REV__ENST00000425141.5_1_2:220498093-220506447:+|nuORF	REV__ENST00000425141.5_1_2:220498093-220506447:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.95440673828125	3	510.970702	1529.89028	-0.71022	-0.0003629	-0.067742	-3.4614E-05	-0.77796	-0.00039751	510.97066739559193	47.876	0.99315	45.166	44.786	45.779	-2.7097					54	19	4	0	0	0	0.026383	1	3016	3016		17.833	9.0338	1	97494	+		9470	18209	7748	7758	10384	10384					0.1465278695975485
ERRKRLLERQF	11	Unmodified	_ERRKRLLERQF_					0	0	0			REV__ENST00000425141.5_1_2:220498093-220506447:+|nuORF	REV__ENST00000425141.5_1_2:220498093-220506447:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.9560241699219	3	510.970702	1529.89028	-0.7903	-0.00040382	-0.41668	-0.00021291	-1.207	-0.00061673	510.97061662914285	48.493	1.0329	45.385	44.938	45.971	-3.1077					57	19	5	0	0	0	0.026277	1	2719	2719		23.378	5.5448	1	95275	+		9471	18209	7748	7758	10385	10385					0.1465278695975485
ERRKSIAVRP	10	Unmodified	_ERRKSIAVRP_					0	0	0		ENST00000374979.7_2_11:124644802-124670283:-|nuORF	ENST00000374979.7_2_11:124644802-124670283:-|nuORF	ENST00000374979.7_2_11:124644802-124670283:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3692016601562	2	606.370195	1210.72584	-3.14	-0.001904	2.1543	0.0013063	-0.98567	-0.00059768	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.78463	1	14812	14812		20.947	4.4738	1	257720			9472	11045	7749	7759	10386	10386					0.12890394539772387
ERRKSIAVRP	10	Unmodified	_ERRKSIAVRP_					0	0	0		ENST00000374979.7_2_11:124644802-124670283:-|nuORF	ENST00000374979.7_2_11:124644802-124670283:-|nuORF	ENST00000374979.7_2_11:124644802-124670283:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3701171875	2	606.370195	1210.72584	-2.264	-0.0013728	1.1871	0.00071982	-1.0769	-0.00065302	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.75313	1	12417	12417		24.519	2.5593	1	205770			9473	11045	7749	7759	10387	10387					0.12890394539772387
ERRLRSEI	8	Unmodified	_ERRLRSEI_					0	0	0			REV__ENST00000379608.7_1_6:10412292-10412529:-|nuORF	REV__ENST00000379608.7_1_6:10412292-10412529:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	530.3118896484375	2	529.806897	1057.59924	0.35582	0.00018852	-2.2625	-0.0011987	-1.9067	-0.0010102	529.8030255036192	105.38	2.0148	104.03	103.57	105.59	-1.3482					144	38	5	0	0	0	0.58851	6	7460	7396;7409;7416;7441;7447;7460		66.429	10.947	1	4513200	+		9474	25161	7750	7760	10388;10389;10390;10391;10392;10393	10393					0.07274468314676596
ERRLRSEI	8	Unmodified	_ERRLRSEI_					0	0	0			REV__ENST00000379608.7_1_6:10412292-10412529:-|nuORF	REV__ENST00000379608.7_1_6:10412292-10412529:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.3125	2	529.806897	1057.59924	-1.3206	-0.00069964	-0.36117	-0.00019135	-1.6817	-0.00089099	529.8038544668168	106.03	2.0556	104.01	103.55	105.6	-2.0161					158	39	6	0	0	0	0.58851	4	9698	9674;9686;9698;9711		66.429	8.618	1	4614300	+		9475	25161	7750	7760	10394;10395;10396;10397	10396					0.07274468314676596
ERRNKGSHS	9	Unmodified	_ERRNKGSHS_					0	0	0		ENST00000557156.1_1_12:56745011-56748252:-|nuORF	ENST00000557156.1_1_12:56745011-56748252:-|nuORF	ENST00000557156.1_1_12:56745011-56748252:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3174438476562	2	535.776128	1069.5377	0.08311	4.4528E-05	-3.0785	-0.0016494	-2.9954	-0.0016049	535.7746022172173	32.11	0.44675	32.11	31.807	32.254	0					10	8	2	0	0	0	0.027461	1	1366	1366		49.442	10.635	1	17999			9476	13682	7751	7761	10398	10398					0.005715366153708601
ERRNSSIVNV	10	Unmodified	_ERRNSSIVNV_					0	0	0		tr|A0A553SG25|A0A553SG25_NIACIPutativeamidasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09980PE=4SV=1	tr|A0A553SG25|A0A553SG25_NIACIPutativeamidasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09980PE=4SV=1	tr|A0A553SG25|A0A553SG25_NIACIPutativeamidasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09980PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	587.3215942382812	2	587.320368	1172.62618	0.74905	0.00043993	-1.1381	-0.0006684	-0.38901	-0.00022847	587.3195769600642	29.847	0.78018	27.137	26.975	27.755	-2.7097					33	15	3	0	0	0	0.79917	1	786	786		19.104	0	1	104770			9477	33110	7752	7762	10399	10399					0.04677532135178808
ERRRCGSL	8	Carbamidomethyl (C)	_ERRRC(Carbamidomethyl (C))GSL_	ERRRC(1)GSL		ERRRC(64)GSL		0	1	0			REV__ENST00000597741.1_1_19:43967535-43969723:-|nuORF	REV__ENST00000597741.1_1_19:43967535-43969723:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	517.7704467773438	2	517.269624	1032.5247	2.4501	0.0012673	-2.2616	-0.0011699	0.18843	9.747E-05	517.2704692595082	96.32	0.50114	96.32	96.082	96.584	0					34	11	4	0	0	0	0.59904	1	10542	10542		64.207	9.431	1	1258600	+		9478	28002	7753	7763	10400	10400	343				0.009733822316320584
ERRRCGSL	8	Carbamidomethyl (C)	_ERRRC(Carbamidomethyl (C))GSL_					0	1	0			REV__ENST00000597741.1_1_19:43967535-43969723:-|nuORF	REV__ENST00000597741.1_1_19:43967535-43969723:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	517.269624	1032.5247	2.4501	0.0012673	-2.2616	-0.0011699	0.18843	9.747E-05	517.2704692595082	96.32	0.50114	96.32	96.082	96.584	0	-0.13812	0.001131	NaN	64.207	34	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1258600	+		9479	28002	7753	7763			343				0.009733822316320584
ERRRCGSL	8	Carbamidomethyl (C)	_ERRRC(Carbamidomethyl (C))GSL_					0	1	0			REV__ENST00000597741.1_1_19:43967535-43969723:-|nuORF	REV__ENST00000597741.1_1_19:43967535-43969723:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	517.269624	1032.5247	0.18945	9.7994E-05	-3.8269	-0.0019796	-3.6375	-0.0018816	517.7683884564818	97.428	1.2295	96.469	95.921	97.15	-0.95857	0.010673	-0.00048838	NaN	64.207	35	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109480	+		9480	28002	7753	7763			343				0.009733822316320584
ERRRCGSL	8	Carbamidomethyl (C)	_ERRRC(Carbamidomethyl (C))GSL_					0	1	0			REV__ENST00000597741.1_1_19:43967535-43969723:-|nuORF	REV__ENST00000597741.1_1_19:43967535-43969723:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	517.269624	1032.5247	0.23561	0.00012187	-3.5141	-0.0018177	-3.2785	-0.0016959	517.7684576949631	98.345	1.4895	96.586	96.06	97.55	-1.7595	0.12745	-0.00016473	NaN	64.207	35	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63508	+		9481	28002	7753	7763			343				0.009733822316320584
ERRRKKRKSCR	11	Unmodified	_ERRRKKRKSCR_					0	0	0		nc|ENSG00000128604|Q13568-6|IRF5	nc|ENSG00000128604|Q13568-6|IRF5	nc|ENSG00000128604|Q13568-6|IRF5	MULTI-MSMS	OvCa9_classI_Rep3	3	501.63311767578125	3	501.635548	1501.88481	-7.1576	-0.0035905	4.1969	0.0021053	-2.9607	-0.0014852	501.63774554440306	163.54	2.3462	162.14	160.37	162.72	-1.3925					135	52	3	0	0	0	0.72548	1	14239	14239		9.2118	0.80454	1	91935			9482	15007	7754	7764	10401	10401					0.15394784896284364
ERRRLNQL	8	Unmodified	_ERRRLNQL_					0	0	0		ENSG00000089053|ENST00000261819|ANAPC5;ENST00000544442.5_1_12:121784793-121790143:-|nuORF;ENST00000545801.1_1_12:121785603-121790107:-|nuORF;ENST00000536416.5_1_12:121783870-121790143:-|nuORF;ANAPC5|p.A230Vfs*18|1|0.12|ENSG00000089053|chr12:121337361-121337362|-/A|frameshift_variant	ENSG00000089053|ENST00000261819|ANAPC5	ENSG00000089053|ENST00000261819|ANAPC5	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.8226318359375	2	542.820338	1083.62612	-0.6504	-0.00035305	2.92	0.0015851	2.2697	0.001232	542.8217373270603	102.37	1.2088	100.17	99.78	100.99	-2.1994					44	22	3	0	0	0	0.64371	1	9221	9221		54.776	3.2486	1	132270			9483	1806	7755	7765	10402	10402					0.08765576925839014
ERRRLNQL	8	Unmodified	_ERRRLNQL_					0	0	0		ENSG00000089053|ENST00000261819|ANAPC5;ENST00000544442.5_1_12:121784793-121790143:-|nuORF;ENST00000545801.1_1_12:121785603-121790107:-|nuORF;ENST00000536416.5_1_12:121783870-121790143:-|nuORF;ANAPC5|p.A230Vfs*18|1|0.12|ENSG00000089053|chr12:121337361-121337362|-/A|frameshift_variant	ENSG00000089053|ENST00000261819|ANAPC5	ENSG00000089053|ENST00000261819|ANAPC5	MULTI-MATCH	OvCa99_classI_Rep5	1		2	542.820338	1083.62612	2.0594	0.0011179	2.7157	0.0014741	4.775	0.002592	542.8216065931866	99.809	0.41177	99.809	99.694	100.11	0	-0.28611	-0.00051474	NaN	54.776	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	359200			9484	1806	7755	7765							0.08765576925839014
ERRRLNQL	8	Unmodified	_ERRRLNQL_					0	0	0		ENSG00000089053|ENST00000261819|ANAPC5;ENST00000544442.5_1_12:121784793-121790143:-|nuORF;ENST00000545801.1_1_12:121785603-121790107:-|nuORF;ENST00000536416.5_1_12:121783870-121790143:-|nuORF;ANAPC5|p.A230Vfs*18|1|0.12|ENSG00000089053|chr12:121337361-121337362|-/A|frameshift_variant	ENSG00000089053|ENST00000261819|ANAPC5	ENSG00000089053|ENST00000261819|ANAPC5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.820338	1083.62612	-1.6047	-0.00087105	3.5964	0.0019522	1.9917	0.0010811	542.8222078218632	100.96	1.0407	100.19	99.823	100.86	-0.76401	0.097217	0.00044139	NaN	54.776	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116300			9485	1806	7755	7765							0.08765576925839014
ERRRLNQL	8	Unmodified	_ERRRLNQL_					0	0	0		ENSG00000089053|ENST00000261819|ANAPC5;ENST00000544442.5_1_12:121784793-121790143:-|nuORF;ENST00000545801.1_1_12:121785603-121790107:-|nuORF;ENST00000536416.5_1_12:121783870-121790143:-|nuORF;ANAPC5|p.A230Vfs*18|1|0.12|ENSG00000089053|chr12:121337361-121337362|-/A|frameshift_variant	ENSG00000089053|ENST00000261819|ANAPC5	ENSG00000089053|ENST00000261819|ANAPC5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	542.820338	1083.62612	-0.63456	-0.00034445	2.9702	0.0016123	2.3356	0.0012678	542.8217952473889	101.73	1.1525	100.2	99.845	101	-1.5211	0.10947	-0.00023842	NaN	54.776	50	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130610			9486	1806	7755	7765							0.08765576925839014
ERSGNDVVVLA	11	Unmodified	_ERSGNDVVVLA_					0	0	0			REV__nc|ENSG00000177943|Q6UXC1|MAMDC4	REV__nc|ENSG00000177943|Q6UXC1|MAMDC4	MULTI-MSMS	OvCa99_classI_Rep5	1	579.8092041015625	2	579.809302	1157.60405	-0.52571	-0.00030481	-0.74542	-0.0004322	-1.2711	-0.00073701	579.8092605647798	47.23	1.1317	47.23	46.852	47.984	0					65	25	5	0	0	0	0.34051	1	3394	3394		65.465	7.2191	1	8401600	+		9487	29025	7756	7766	10403	10403					0.031553076667933055
ERSLLYEGLL	10	Unmodified	_ERSLLYEGLL_					0	0	0		tr|A0A553SLF1|A0A553SLF1_NIACIL-threoninedehydrataseOS=NialliacirculansOX=1397GN=ilvAPE=3SV=1	tr|A0A553SLF1|A0A553SLF1_NIACIL-threoninedehydrataseOS=NialliacirculansOX=1397GN=ilvAPE=3SV=1	tr|A0A553SLF1|A0A553SLF1_NIACIL-threoninedehydrataseOS=NialliacirculansOX=1397GN=ilvAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	596.8330688476562	2	596.832246	1191.64994	2.6412	0.0015764	-0.40112	-0.0002394	2.2401	0.001337	596.8318260406395	89.128	0.96165	89.128	88.595	89.556	0					63	23	4	0	0	0	0.24109	1	9494	9494		88.177	13.134	1	7681300			9488	33716	7757	7767	10404	10404					0.061779528489978475
ERSNIRISI	9	Unmodified	_ERSNIRISI_					0	0	0			REV__ENSG00000104499|ENST00000220940|GML	REV__ENSG00000104499|ENST00000220940|GML	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.323486328125	2	544.314554	1086.61456	-0.53819	-0.00029294	1.605	0.00087364	1.0668	0.0005807	544.3154174803543	75	0.57635	71.769	71.629	72.205	-3.2308					18	11	2	0	0	0	0.027462	1	5914	5914		35.618	20.954	1	44003	+		9489	17666	7758	7768	10405	10405					0.07471335111858934
ERSNIRISI	9	Unmodified	_ERSNIRISI_					0	0	0			REV__ENSG00000104499|ENST00000220940|GML	REV__ENSG00000104499|ENST00000220940|GML	MULTI-MATCH	OvCa9_classI_Rep2	2		2	544.314554	1086.61456	-0.67737	-0.0003687	1.9278	0.0010493	1.2504	0.00068063	544.3154659926881	73.743	0.63191	71.343	71.106	71.738	-2.3999	-0.17846	0.00089472	NaN	35.618	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34600	+		9490	17666	7758	7768							0.07471335111858934
ERSNIRISI	9	Unmodified	_ERSNIRISI_					0	0	0			REV__ENSG00000104499|ENST00000220940|GML	REV__ENSG00000104499|ENST00000220940|GML	MULTI-MATCH	OvCa9_classI_Rep3	3		2	544.314554	1086.61456	-0.26957	-0.00014673	0.2902	0.00015796	0.020628	1.1228E-05	544.314622873801	73.939	1.0396	71.452	71.125	72.164	-2.4873	-0.069474	-0.00088802	NaN	35.618	35	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51173	+		9491	17666	7758	7768							0.07471335111858934
ERSRELRRWWL	11	Unmodified	_ERSRELRRWWL_					0	0	0		ENST00000552885.2_1_12:80328793-80329330:+|nuORF	ENST00000552885.2_1_12:80328793-80329330:+|nuORF	ENST00000552885.2_1_12:80328793-80329330:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.3250732421875	3	529.626936	1585.85898	0.0088149	4.6686E-06	-4.2586	-0.0022555	-4.2498	-0.0022508	529.6246126160572	37.479	0.69931	34.586	34.242	34.941	-2.8925					21	13	2	0	0	0	0.026488	1	1354	1354		10.104	4.691	1	24050			9492	13615	7759	7769	10406	10406					0.08948213925646087
ERSSRLHVT	9	Unmodified	_ERSSRLHVT_					0	0	0		ENST00000268261.8_1_16:8942002-8942233:+|nuORF	ENST00000268261.8_1_16:8942002-8942233:+|nuORF	ENST00000268261.8_1_16:8942002-8942233:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.323486328125	2	542.796529	1083.5785	-0.63984	-0.0003473	3.4163	0.0018543	2.7764	0.001507	542.7982386331407	74.987	2.0655	71.756	70.723	72.788	-3.2308					84	42	3	0	0	0	0.027461	1	5914	5914		58.782	14.665	1	502430			9493	9972	7760	7770	10407	10407					0.04005877935014723
ERSYRGSL	8	Unmodified	_ERSYRGSL_					0	0	0			REV__nc|ENSG00000184343|Q9UPE1-3|SRPK3	REV__nc|ENSG00000184343|Q9UPE1-3|SRPK3	MULTI-SECPEP	OvCa9_classI_Rep2	2	484.2691345214844	2	484.251423	966.488293	-0.91268	-0.00044197	2.8473	0.0013788	1.9346	0.00093683	484.2515253001756	48.909	0.84085	46.149	45.929	46.769	-2.7603					23	16	3	0	0	0	0.028476	1	3115	3115		49.442	23.991	1	18481	+		9494	22422	7761	7771	10408	10408					0.0037082860658301797
ERTKKRERIEW	11	Unmodified	_ERTKKRERIEW_					0	0	0			REV__ENST00000532683.5_1_14:73569902-73577964:+|nuORF	REV__ENST00000532683.5_1_14:73569902-73577964:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	510.95440673828125	3	510.954829	1529.84266	-0.81742	-0.00041766	-0.052373	-2.676E-05	-0.86979	-0.00044442	510.9548519015184	48.416	2.2317	45.656	44.835	47.067	-2.7603					140	44	5	0	0	0	0.72502	1	3016	3016		15.337	1.8295	1	1255300	+		9495	18463	7762	7772	10409	10409					0.09893087968885084
ERTLFSTGPA	10	Unmodified	_ERTLFSTGPA_					0	0	0			REV__ENSG00000178188|ENST00000684370|SH2B1	REV__ENSG00000178188|ENST00000684370|SH2B1	MULTI-SECPEP	OvCa9_classI_Rep2	2	540.3314819335938	2	539.780013	1077.54547	-0.56744	-0.00030629	-0.30891	-0.00016675	-0.87636	-0.00047304	540.2810994381919	110.14	0.24669	109.97	109.81	110.06	-0.17236					7	4	2	0	0	0	0.026826	1	10345	10345		44.377	3.599	1	13787	+		9496	22049	7763	7773	10410	10410					0.009802510922781948
ERTNKMLKAE	10	Unmodified	_ERTNKMLKAE_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11;MYH11|p.M1513I|1|0.06|ENSG00000133392|chr16:15721461-15721461|C/G|missense_variant	nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MULTI-MSMS	OvCa99_classI_Rep5	1	610.329345703125	2	610.326805	1218.63906	2.6327	0.0016068	0.43322	0.00026441	3.0659	0.0018712	610.3271215555296	121.06	0.87425	121.06	120.74	121.61	0					52	19	3	0	0	0	0.22663	1	13912	13912		90.37	18.492	1	868900			9497	4218	7764	7774	10411	10411					0.038482272030705644
ERTVEIRFD	9	Unmodified	_ERTVEIRFD_					0	0	0			REV__CON__Q0V8M9	REV__CON__Q0V8M9	MULTI-MSMS	OvCa9_classI_Rep4_	4	582.8055419921875	2	582.80402	1163.59349	-0.60347	-0.00035171	-0.34275	-0.00019976	-0.94622	-0.00055146	582.8037669692097	75.607	0.86997	72.668	72.352	73.222	-2.9389					57	17	4	0	0	0	0.38807	1	5987	5987		53.089	7.1167	1	643310	+	+	9498	16198	7765	7775	10412	10412					0.018233250123103062
ERTYRYFF	8	Unmodified	_ERTYRYFF_					0	0	0		ENSG00000110060|ENST00000227474|PUS3	ENSG00000110060|ENST00000227474|PUS3	ENSG00000110060|ENST00000227474|PUS3	MULTI-MSMS	OvCa99_classI_Rep5	1	591.292236328125	2	591.290548	1180.56654	0.29364	0.00017363	-0.77706	-0.00045947	-0.48342	-0.00028584	591.290071291312	72.746	1.3947	72.746	72.165	73.56	0					59	34	4	0	0	0	0.64026	1	7100	7100		55.504	2.4152	1	3334500			9499	2750	7766	7776	10413	10413					-0.01651738808209302
ERVKKHIAD	9	Unmodified	_ERVKKHIAD_					0	0	0		tr|A0A553SUL2|A0A553SUL2_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00770PE=3SV=1	tr|A0A553SUL2|A0A553SUL2_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00770PE=3SV=1	tr|A0A553SUL2|A0A553SUL2_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00770PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.3179321289062	2	548.317097	1094.61964	-0.12306	-6.7474E-05	-0.73352	-0.0004022	-0.85658	-0.00046968	548.3165681470533	75.391	2.0204	72.16	71.192	73.213	-3.2308					95	41	4	0	0	0	0.55588	1	5925	5925		37.159	3.6435	1	1571700			9500	34620	7767	7777	10414	10414					0.07611638974481139
ERVLVRPHE	9	Unmodified	_ERVLVRPHE_					0	0	0		ENSG00000112290|ENST00000392589|WASF1	ENSG00000112290|ENST00000392589|WASF1	ENSG00000112290|ENST00000392589|WASF1	MULTI-MSMS	OvCa99_classI_Rep5	1	567.826171875	2	567.822547	1133.63054	0.093723	5.3218E-05	3.3708	0.001914	3.4645	0.0019672	567.8243831009091	71.013	0.90759	71.013	70.8	71.707	0					53	22	3	0	0	0	0.59259	1	6832	6832		32.812	0	1	5172500			9501	2893	7768	7778	10415	10415					0.06907041348767962
ERVNKEHV	8	Unmodified	_ERVNKEHV_					0	0	0			REV__nc|ENSG00000175224|O75143-4|ATG13	REV__nc|ENSG00000175224|O75143-4|ATG13	MULTI-MSMS	OvCa99_classI_Rep5	1	505.7724609375	2	505.772522	1009.53049	0.87442	0.00044226	-1.9598	-0.00099122	-1.0854	-0.00054896	505.771376896317	157.73	1.3421	157.73	157.45	158.79	0					66	27	4	0	0	0	0.73494	1	18518	18518		34.173	1.3601	1	746880	+		9502	21883	7769	7779	10416	10416					0.026108040149551925
ERVPRLHS	8	Unmodified	_ERVPRLHS_					0	0	0		ENST00000334554.11_1_22:20132949-20133189:+|nuORF	ENST00000334554.11_1_22:20132949-20133189:+|nuORF	ENST00000334554.11_1_22:20132949-20133189:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	497.2843933105469	2	497.283057	992.551562	0.22343	0.00011111	-0.0062517	-3.1089E-06	0.21718	0.000108	497.2829245992996	67.292	1.3356	67.292	66.816	68.152	0					79	33	4	0	0	0	0.60331	1	6265	6265		63.306	2.3343	1	7654800			9503	10488	7770	7780	10417	10417					0.05498814114469042
ERVQINEMA	9	Unmodified	_ERVQINEMA_					0	0	0			REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	MULTI-MSMS	OvCa99_classI_Rep5	1	545.271484375	2	545.271498	1088.52844	-0.87004	-0.00047441	1.2477	0.00068032	0.37763	0.00020591	545.2720644615778	34.934	1.7301	34.934	34.209	35.939	0					73	36	3	0	0	0	0.50149	1	1712	1712		42.396	1.618	1	638820	+		9504	20275	7771	7781	10418	10418					-0.012279927851750472
ERVRLGTAE	9	Unmodified	_ERVRLGTAE_					0	0	0			REV__ENSG00000107731|ENST00000335350|UNC5B	REV__ENSG00000107731|ENST00000335350|UNC5B	MULTI-MSMS	OvCa9_classI_Rep2	2	515.7863159179688	2	515.78563	1029.55671	0.015208	7.8439E-06	3.2798	0.0016917	3.295	0.0016995	515.7873046158662	78.2	1.7356	76.46	75.672	77.408	-1.7398					60	30	3	0	0	0	0.12365	1	6498	6498		90.777	11.326	1	581100	+		9505	17854	7772	7782	10419	10419					0.04311073186431713
ERVRLGTAE	9	Unmodified	_ERVRLGTAE_					0	0	0			REV__ENSG00000107731|ENST00000335350|UNC5B	REV__ENSG00000107731|ENST00000335350|UNC5B	MULTI-MSMS	OvCa9_classI_Rep3	3	515.7877807617188	2	515.78563	1029.55671	0.18906	9.7516E-05	3.1338	0.0016164	3.3229	0.0017139	515.7872662216187	78.378	1.3926	76.025	75.698	77.091	-2.3527					57	27	3	0	0	0	0.14998	3	4153	4153;4164;4170		84.916	7.8021	1	1459700	+		9506	17854	7772	7782	10420;10421;10422	10420					0.04311073186431713
ERVRRSKNS	9	Unmodified	_ERVRRSKNS_					0	0	0			REV__ENSG00000159792|ENST00000291041|PSKH1	REV__ENSG00000159792|ENST00000291041|PSKH1	MULTI-MSMS	OvCa99_classI_Rep5	1	566.3232421875	2	566.320703	1130.62685	0.062609	3.5457E-05	3.1725	0.0017967	3.2351	0.0018321	566.3223529100455	52.389	0.70098	52.389	52.127	52.828	0					41	15	4	0	0	0	0.34132	1	4124	4124		58.23	3.4536	1	2302200	+		9507	20628	7773	7783	10423	10423					0.06676371574894802
ERVSLNKLV	9	Unmodified	_ERVSLNKLV_					0	0	0			REV__tr|A0A7D7A1D0|A0A7D7A1D0_9CLOTSugarkinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03655PE=3SV=1	REV__tr|A0A7D7A1D0|A0A7D7A1D0_9CLOTSugarkinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03655PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7789306640625	2	529.321848	1056.62914	0.4361	0.00023084	-3.7887	-0.0020054	-3.3526	-0.0017746	529.3201831559581	67.097	1.0592	67.097	66.857	67.916	0					42	26	3	0	0	0	0.027453	1	6305	6305		45.972	3.5761	1	941640	+		9508	32485	7774	7784	10424	10424					0.10309407260001535
ERVTVPESTL	10	Unmodified	_ERVTVPESTL_					0	0	0			REV__nc|ENSG00000111799|Q99715-4|COL12A1	REV__nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.2933959960938	2	565.806228	1129.5979	0.45261	0.00025609	-0.44926	-0.0002542	0.0033421	1.891E-06	565.8058912570224	70.772	0.50571	70.772	70.488	70.994	0					20	12	3	0	0	0	0.027089	1	6824	6824		25.126	11.351	1	700470	+		9509	18060	7775	7785	10425	10425					0.038287894352379226
ERVVRLGPD	9	Unmodified	_ERVVRLGPD_					0	0	0			REV__ENSG00000183196|ENST00000332272|CHST6	REV__ENSG00000183196|ENST00000332272|CHST6	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.7977294921875	2	520.795998	1039.57744	-0.79166	-0.0004123	-1.0007	-0.00052115	-1.7923	-0.00093344	520.7959216597084	63.392	1.3961	59.917	59.339	60.735	-3.475					63	24	5	0	0	0	0.37135	1	4451	4451		54.776	5.3348	1	149680	+		9510	22347	7776	7786	10426	10426					0.05923663566113646
ERVVRLGPD	9	Unmodified	_ERVVRLGPD_					0	0	0			REV__ENSG00000183196|ENST00000332272|CHST6	REV__ENSG00000183196|ENST00000332272|CHST6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	520.795998	1039.57744	-1.4757	-0.00076855	-0.56478	-0.00029414	-2.0405	-0.0010627	520.7960199163479	62.517	1.7506	59.759	59.237	60.988	-2.7583	-0.079338	0.00019694	NaN	54.776	87	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98070	+		9511	22347	7776	7786							0.05923663566113646
ERVVRLGPD	9	Unmodified	_ERVVRLGPD_					0	0	0			REV__ENSG00000183196|ENST00000332272|CHST6	REV__ENSG00000183196|ENST00000332272|CHST6	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	520.795998	1039.57744	-0.79166	-0.0004123	-1.0007	-0.00052115	-1.7923	-0.00093344	520.7959216597084	63.392	1.3961	59.917	59.339	60.735	-3.475	0.079338	-0.00025708	NaN	54.776	63	24	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149680	+		9512	22347	7776	7786							0.05923663566113646
ERYFTALD	8	Unmodified	_ERYFTALD_					0	0	0			REV__nc|ENSG00000136161|O95199-2|RCBTB2	REV__nc|ENSG00000136161|O95199-2|RCBTB2	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.8100891113281	2	507.748182	1013.48181	1.4769	0.00074989	-1.7538	-0.00089049	-0.27691	-0.0001406	507.74763199071106	89.038	0.54152	87.671	87.183	87.725	-1.3676					12	10	2	0	0	0	0.028476	1	7785	7785		58.782	5.8453	1	6369.8	+		9513	19366	7777	7787	10427	10427					-0.024391093448230095
ERYLTEEIF	9	Unmodified	_ERYLTEEIF_					0	0	0		tr|A0A7D6VQM7|A0A7D6VQM7_9CLOTAsparagine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=asnSPE=3SV=1	tr|A0A7D6VQM7|A0A7D6VQM7_9CLOTAsparagine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=asnSPE=3SV=1	tr|A0A7D6VQM7|A0A7D6VQM7_9CLOTAsparagine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=asnSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	600.2980346679688	2	600.300778	1198.587	0.42593	0.00025569	-3.4738	-0.0020853	-3.0479	-0.0018297	600.2986444844016	66.04	1.7869	63.345	62.872	64.659	-2.6958					108	35	5	0	0	0	0.44248	1	5100	5100		40.778	5.6261	1	817990			9514	34860	7778	7788	10428	10428					-0.004346129390569331
ERYPYPVRL	9	Unmodified	_ERYPYPVRL_					0	0	0		ENSG00000091986|ENST00000206423|CCDC80;nc|ENSG00000091986|Q76M96-2|CCDC80	ENSG00000091986|ENST00000206423|CCDC80	ENSG00000091986|ENST00000206423|CCDC80	MULTI-MSMS	OvCa99_classI_Rep5	1	596.828857421875	2	596.827298	1191.64004	2.0606	0.0012298	0.52346	0.00031242	2.5841	0.0015422	596.8273508527833	79.63	1.2954	79.63	79.276	80.571	0					106	31	6	0	0	0	0.064985	3	8128	8102;8128;8159		110.12	55.344	1	6500900			9515	1879	7779	7789	10429;10430;10431	10430					0.05188809634273639
ESAAGAGLRP	10	Unmodified	_ESAAGAGLRP_					0	0	0			REV__ENST00000372699.7_1_1:40997363-40998823:+|nuORF	REV__ENST00000372699.7_1_1:40997363-40998823:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	464.7456970214844	2	464.745973	927.477394	-0.21975	-0.00010213	0.063616	2.9565E-05	-0.15613	-7.2562E-05	464.7458914674293	42.86	0.98394	42.86	42.624	43.608	0					55	22	4	0	0	0	0.22663	1	2778	2778		90.37	8.0648	1	2549000	+		9516	25009	7780	7790	10432	10432					0.010754262322734576
ESAAKKPKW	9	Unmodified	_ESAAKKPKW_					0	0	0		ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.3135986328125	2	522.795466	1043.57638	-0.40098	-0.00020963	1.0534	0.00055073	0.65245	0.0003411	523.2974475631225	47.464	1.42	44.357	43.568	44.988	-3.1077					55	27	3	0	0	0	0.027462	1	2573	2573		34.173	7.4796	1	45366			9517	1639	7781	7791	10433	10433					0.056334491971938405
ESAAKKPKW	9	Unmodified	_ESAAKKPKW_					0	0	0		ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	ENSG00000080608|ENST00000397885|PUM3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	522.795466	1043.57638	-0.20029	-0.00010471	0.80153	0.00041904	0.60124	0.00031432	522.7955524084617	47.116	1.0909	44.406	43.844	44.935	-2.7097	0.024962	-0.00010939	NaN	34.173	50	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20064			9518	1639	7781	7791							0.056334491971938405
ESAALSTSKI	10	Unmodified	_ESAALSTSKI_					0	0	0		ENSG00000120262|ENST00000239374|CCDC170	ENSG00000120262|ENST00000239374|CCDC170	ENSG00000120262|ENST00000239374|CCDC170	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.776123046875	2	503.774396	1005.53424	-1.6287	-0.00082048	2.38	0.001199	0.75131	0.00037849	503.77552955153	73.012	1.3511	69.615	69.253	70.604	-3.3961					67	27	4	0	0	0	0.40664	1	5655	5655		67.494	8.7117	1	719990			9519	3424	7782	7792	10434	10434					0.03169428998137391
ESAALSTSKI	10	Unmodified	_ESAALSTSKI_					0	0	0		ENSG00000120262|ENST00000239374|CCDC170	ENSG00000120262|ENST00000239374|CCDC170	ENSG00000120262|ENST00000239374|CCDC170	MULTI-MATCH	OvCa9_classI_Rep2	2		2	503.774396	1005.53424	-0.12552	-6.3236E-05	1.3668	0.00068857	1.2413	0.00062533	503.77495423554245	71.966	1.6237	69.459	68.752	70.375	-2.5071	-0.078356	-0.00055975	NaN	67.494	59	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189370			9520	3424	7782	7792							0.03169428998137391
ESAGEPMV	8	Unmodified	_ESAGEPMV_					0	0	0		ENST00000280663.12_1_12:1909550-1953688:-|nuORF;nc|ENSG00000151062|Q7Z3S7-2|CACNA2D4;nc|ENSG00000151062|Q7Z3S7-4|CACNA2D4;nc|ENSG00000151062|Q7Z3S7-6|CACNA2D4;ENSG00000151062|ENST00000382722|CACNA2D4;nc|ENSG00000151062|Q7Z3S7-5|CACNA2D4	ENST00000280663.12_1_12:1909550-1953688:-|nuORF	ENST00000280663.12_1_12:1909550-1953688:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	409.5382080078125	2	410.181286	818.348019	0.37741	0.0001548	1.6121	0.00066127	1.9895	0.00081608	410.1816669372558	50.455	0.70727	50.455	50.156	50.863	0					31	15	4	0	0	0	0.028476	1	3886	3886		12.959	0	1	570530			9521	5530	7783	7793	10435	10435					-0.06842091442024412
ESAHPPSLEL	10	Unmodified	_ESAHPPSLEL_					0	0	0			REV__ENSG00000181315|ENST00000415922|ZNF322	REV__ENSG00000181315|ENST00000415922|ZNF322	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.8075561523438	2	540.272021	1078.52949	2.5447	0.0013748	0.39301	0.00021233	2.9377	0.0015872	540.2719658692032	96.058	0.33987	96.058	95.913	96.253	0					20	7	4	0	0	0	0.02661	1	10525	10525		49.442	10.189	1	920310	+		9522	22226	7784	7794	10436	10436					-0.006634551446268233
ESAINFSF	8	Unmodified	_ESAINFSF_					0	0	0			REV__tr|A0A7D6VRC2|A0A7D6VRC2_9CLOTN-acetylmuramoyl-L-alanineamidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18830PE=4SV=1	REV__tr|A0A7D6VRC2|A0A7D6VRC2_9CLOTN-acetylmuramoyl-L-alanineamidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18830PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	457.7149658203125	2	457.71635	913.418148	-0.58987	-0.00026999	-4.0264	-0.0018429	-4.6162	-0.0021129	457.71442310912187	39.734	0.29283	39.734	39.547	39.84	0					10	6	2	0	0	0	0.56195	1	2365	2365		71.296	2.811	1	323010	+		9523	31404	7785	7795	10437	10437					-0.04202469781898799
ESAINFSF	8	Unmodified	_ESAINFSF_					0	0	0			REV__tr|A0A7D6VRC2|A0A7D6VRC2_9CLOTN-acetylmuramoyl-L-alanineamidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18830PE=4SV=1	REV__tr|A0A7D6VRC2|A0A7D6VRC2_9CLOTN-acetylmuramoyl-L-alanineamidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18830PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	457.71635	913.418148	-0.58987	-0.00026999	-4.0264	-0.0018429	-4.6162	-0.0021129	457.71442310912187	39.734	0.29283	39.734	39.547	39.84	0	0	0	NaN	71.296	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	323010	+		9524	31404	7785	7795							-0.04202469781898799
ESAKHCMLS	9	Unmodified	_ESAKHCMLS_					0	0	0			REV__ENST00000444842.6_1_1:215408667-215408790:+|nuORF	REV__ENST00000444842.6_1_1:215408667-215408790:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.2746887207031	2	503.228245	1004.44194	-0.048609	-2.4461E-05	-0.37558	-0.000189	-0.42419	-0.00021346	503.22794924866815	30.79	2.1667	30.79	30.186	32.353	0					70	43	2	0	0	0	0.02744	1	1193	1193		62.107	12.666	1	79004	+		9525	25879	7786	7796	10438	10438					-0.06010695611382744
ESALPLREI	9	Unmodified	_ESALPLREI_					0	0	0		ENST00000439616.6_1_7:44706345-44714012:+|nuORF;nc|ENSG00000105953|Q02218-3|OGDH;nc|ENSG00000105953|Q02218-2|OGDH;ENSG00000105953|ENST00000222673|OGDH	ENST00000439616.6_1_7:44706345-44714012:+|nuORF	ENST00000439616.6_1_7:44706345-44714012:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.7978515625	2	514.292756	1026.57096	-1.0486	-0.00053928	-4.3582	-0.0022414	-5.4067	-0.0027807	514.7930621244875	118.07	0.5785	116.73	116.47	117.05	-1.3444					20	10	3	0	0	0	0.027462	1	11086	11086		44.377	17.581	1	24461			9526	2516	7787	7797	10439	10439					0.058737256147196604
ESANSLSSL	9	Unmodified	_ESANSLSSL_					0	0	0			REV__ENST00000497410.5_1_5:864585-865736:-|nuORF	REV__ENST00000497410.5_1_5:864585-865736:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	454.7136535644531	2	454.221997	906.429441	-0.79988	-0.00036332	1.4785	0.00067155	0.67857	0.00030822	454.22260826297907	34.759	0.37212	34.759	34.539	34.911	0					11	7	2	0	0	0	0.027411	1	1706	1706		64.207	8.7031	1	33114	+		9527	16578	7788	7798	10440	10440					-0.027516924784094954
ESAPRVPSL	9	Unmodified	_ESAPRVPSL_					0	0	0			REV__ENST00000358625.3_1_9:137004970-137005837:+|nuORF	REV__ENST00000358625.3_1_9:137004970-137005837:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.7923278808594	2	478.263999	954.513445	0.21164	0.00010122	4.3058	0.0020593	4.5174	0.0021605	478.26610325859514	82.554	1.0759	80.955	80.384	81.46	-1.5988					25	20	2	0	0	0	0.027433	1	7038	7038		37.812	0	1	35259	+		9528	24802	7789	7799	10441	10441					0.03436883409131042
ESARKRVKA	9	Unmodified	_ESARKRVKA_					0	0	0			REV__nc|ENSG00000100170|P13866-2|SLC5A1	REV__nc|ENSG00000100170|P13866-2|SLC5A1	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.8067016601562	2	522.817264	1043.61998	0.48841	0.00025535	1.5924	0.00083253	2.0808	0.0010879	522.8181331655272	78.926	1.0193	77.186	76.807	77.826	-1.7398					31	19	2	0	0	0	0.027433	1	6577	6577		51.335	0	1	39172	+		9529	17376	7790	7800	10442	10442					0.09991058694322419
ESASAHLS	8	Unmodified	_ESASAHLS_					0	0	0		ENSG00000185085|ENST00000330574|INTS5	ENSG00000185085|ENST00000330574|INTS5	ENSG00000185085|ENST00000330574|INTS5	MULTI-MSMS	OvCa9_classI_Rep2	2	401.1903991699219	2	401.1905	800.366446	-0.33216	-0.00013326	0.61593	0.00024711	0.28377	0.00011385	401.19068995636417	37.659	1.3309	34.95	34.731	36.062	-2.7097					48	26	4	0	0	0	0.59148	1	1721	1721		65.803	2.8247	1	204500			9530	8224	7791	7801	10443	10443					-0.04172213475806075
ESATKRLT	8	Unmodified	_ESATKRLT_					0	0	0			REV__nc|ENSG00000166130|Q70UQ0-2|IKBIP	REV__nc|ENSG00000166130|Q70UQ0-2|IKBIP	MULTI-MSMS	OvCa9_classI_Rep2	2	453.2557373046875	2	453.256174	904.497795	0.87584	0.00039698	-0.9165	-0.00041541	-0.040654	-1.8427E-05	453.2556671396332	49.258	2.2776	46.498	46.078	48.356	-2.7603					121	45	5	0	0	0	0.68714	1	3157	3157		45.952	0	1	1197000	+		9531	28977	7792	7802	10444	10444					0.04172596892078673
ESATNGPSC	9	Unmodified	_ESATNGPSC_					0	0	0			REV__ENSG00000009413|ENST00000368802|REV3L	REV__ENSG00000009413|ENST00000368802|REV3L	MULTI-MSMS	OvCa9_classI_Rep3	3	433.17193603515625	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.69123	1	2068	2068		20.947	0.4651	1	60065	+		9532	16465	7793	7803	10445	10445					-0.10924467452775843
ESAVEISCIIT	11	Unmodified	_ESAVEISCIIT_					0	0	0		tr|A0A7D6VQV5|A0A7D6VQV5_9CLOT6-phospho-beta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16735PE=3SV=1	tr|A0A7D6VQV5|A0A7D6VQV5_9CLOT6-phospho-beta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16735PE=3SV=1	tr|A0A7D6VQV5|A0A7D6VQV5_9CLOT6-phospho-beta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16735PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.2816162109375	2	582.794472	1163.57439	1.5533	0.00090525	-3.0413	-0.0017725	-1.488	-0.00086722	582.7922932392814	77.682	0.63057	77.682	77.422	78.053	0					33	14	4	0	0	0	0.025453	1	7850	7850		22.58	0	1	2639500			9533	34871	7794	7804	10446	10446					-0.000853923936119827
ESAVQLKQTL	10	Unmodified	_ESAVQLKQTL_					0	0	0			REV__nc|ENSG00000156697|Q9BVJ6-3|UTP14A;REV__ENSG00000253797|ENST00000521776|UTP14C	REV__ENSG00000253797|ENST00000521776|UTP14C	MULTI-MSMS	OvCa9_classI_Rep2	2	558.81689453125	2	558.816596	1115.61864	0.30325	0.00016946	0.12276	6.86E-05	0.42601	0.00023806	558.8161111583237	45.682	2.04	42.972	42.697	44.737	-2.7097					67	40	2	0	0	0	0.3094	1	2725	2725		79.713	0	1	1772600	+		9534	20493;23507	7795	7805	10447	10447					0.0654537981492922
ESAVRLLRSH	10	Unmodified	_ESAVRLLRSH_					0	0	0		ENSG00000187741|ENST00000389301|FANCA;nc|ENSG00000187741|O15360-3|FANCA;FANCA|p.E886Rfs*3|1|0.09|ENSG00000187741|chr16:89765012-89765012|C/-|frameshift_variant;nc|ENSG00000187741|O15360-2|FANCA;FANCA-PRKD2|1|fusion	ENSG00000187741|ENST00000389301|FANCA;FANCA-PRKD2|1|fusion	ENSG00000187741|ENST00000389301|FANCA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	584.3157348632812	2	584.333279	1166.652	0.16998	9.9325E-05	-2.7473	-0.0016053	-2.5773	-0.001506	584.3321620543736	35.39	0.30043	32.541	32.29	32.59	-2.849					7	5	2	0	0	0	0.02706	1	1114	1114		30.318	16.181	1	6897.2			9535	8427;14323	7796	7806	10448	10448					0.07534426377446835
ESAYPPVKLQ	10	Unmodified	_ESAYPPVKLQ_					0	0	0			REV__nc|ENSG00000111321|P36941-2|LTBR	REV__nc|ENSG00000111321|P36941-2|LTBR	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.3058471679688	2	566.305864	1130.59717	0.30049	0.00017017	-3.9073	-0.0022127	-3.6068	-0.0020426	566.3035032969271	52.614	1.411	49.406	49.145	50.556	-3.208					88	27	5	0	0	0	0.42962	1	3170	3170		64.207	2.0999	1	732130	+		9536	28795	7797	7807	10449	10449					0.03709994786186144
ESDEVVRKP	9	Unmodified	_ESDEVVRKP_					0	0	0			REV__nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	REV__nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.3072509765625	2	529.77747	1057.54039	-0.65935	-0.00034931	1.5458	0.00081893	0.88646	0.00046962	529.7777548963943	59.467	0.7353	56.075	55.904	56.639	-3.392					30	14	3	0	0	0	0.027295	1	3997	3997		74.255	26.296	1	130110	+		9537	20808	7798	7808	10450	10450					0.013919472296720414
ESDFDRRL	8	Unmodified	_ESDFDRRL_					0	0	0		ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1;nc|ENSG00000104218|Q1MSJ5-2|CSPP1;nc|ENSG00000104218|Q1MSJ5-1|CSPP1	ENSG00000104218|ENST00000678616|CSPP1	ENSG00000104218|ENST00000678616|CSPP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.8077392578125	2	519.254163	1036.49377	1.9737	0.0010248	-3.9752	-0.0020641	-2.0015	-0.0010393	519.2531435679481	88.852	0.78708	87.484	86.987	87.774	-1.3676					30	15	3	0	0	0	0.028476	1	7740	7740		54.776	5.3348	1	31673			9538	2359	7799	7809	10451	10451					-0.023014926016230675
ESDIVSLHI	9	Unmodified	_ESDIVSLHI_					0	0	0			REV__ENST00000503539.5_1_4:79570833-79602009:+|nuORF	REV__ENST00000503539.5_1_4:79570833-79602009:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3173828125	2	506.769114	1011.52368	2.1724	0.0011009	0.9409	0.00047682	3.1133	0.0015777	506.76968250883976	108.4	0.81879	108.4	108.03	108.85	0					26	18	3	0	0	0	0.027295	1	12247	12247		84.916	8.1414	1	499570	+		9539	26845	7800	7810	10452	10452					0.01837446343722604
ESDQDFSSLSP	11	Unmodified	_ESDQDFSSLSP_					0	0	0			REV__nc|ENSG00000016402|Q9UHF4-2|IL20RA	REV__nc|ENSG00000016402|Q9UHF4-2|IL20RA	MULTI-SECPEP	OvCa9_classI_Rep2	2	606.8159790039062	2	606.256765	1210.49898	-0.34201	-0.00020734	0.99815	0.00060513	0.65614	0.00039779	606.2573239507652	95.966	1.1394	94.938	94.664	95.804	-1.0281					37	22	2	0	0	0	0.025457	1	8628	8628		29.17	13.528	1	33844	+		9540	16523	7801	7811	10453	10453					-0.09785278320327961
ESDSMYDR	8	Unmodified	_ESDSMYDR_					0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-MSMS	OvCa99_classI_Rep5	1	501.6949768066406	2	501.695289	1001.37602	-0.19811	-9.9393E-05	0.040913	2.0526E-05	-0.1572	-7.8867E-05	501.69515766016343	30.532	5.4621	30.532	29.735	35.198	0					271	111	3	0	0	0	0.56195	2	1176	1176;1304		71.296	17.944	1	357770	+		9541	22589	7802	7812	10454;10455	10454					-0.12460813252585012
ESDSSARGGS	10	Unmodified	_ESDSSARGGS_					0	0	0		ENST00000303406.4_3_12:54411079-54447704:+|nuORF	ENST00000303406.4_3_12:54411079-54447704:+|nuORF	ENST00000303406.4_3_12:54411079-54447704:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.78759765625	2	476.70196	951.389367	1.2028	0.00057339	2.78	0.0013252	3.9828	0.0018986	476.70224025526835	140.65	0.76781	139.16	138.81	139.58	-1.4952					33	14	3	0	0	0	0.026782	1	13750	13750		37.812	9.9293	1	52702			9542	10214	7803	7813	10456	10456					-0.08827239148979515
ESEARLKSEI	10	Unmodified	_ESEARLKSEI_					0	0	0			REV__ENST00000502249.6_1_4:119435248-119475252:+|nuORF	REV__ENST00000502249.6_1_4:119435248-119475252:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	581.3114013671875	2	581.309135	1160.60372	-0.97373	-0.00056604	0.85977	0.00049979	-0.11396	-6.6246E-05	581.3095855666561	56.039	1.2666	52.744	52.361	53.628	-3.2944					71	24	5	0	0	0	0.24109	2	3563	3563;3573		88.177	8.676	1	747040	+		9543	19862	7804	7814	10457;10458	10457					0.029838879469025414
ESEARLKSEI	10	Unmodified	_ESEARLKSEI_					0	0	0			REV__ENST00000502249.6_1_4:119435248-119475252:+|nuORF	REV__ENST00000502249.6_1_4:119435248-119475252:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	581.309135	1160.60372	-1.2637	-0.0007346	1.31	0.00076152	0.046307	2.6918E-05	581.3097937204465	55.571	1.0419	52.767	52.332	53.374	-2.804	0.011199	0.00027327	NaN	88.177	61	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194990	+		9544	19862	7804	7814							0.029838879469025414
ESEARLKSEI	10	Unmodified	_ESEARLKSEI_					0	0	0			REV__ENST00000502249.6_1_4:119435248-119475252:+|nuORF	REV__ENST00000502249.6_1_4:119435248-119475252:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	581.309135	1160.60372	-0.97373	-0.00056604	0.85977	0.00049979	-0.11396	-6.6246E-05	581.3095855666561	56.039	1.2666	52.744	52.361	53.628	-3.2944	-0.011199	-0.00025018	NaN	88.177	71	24	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	747040	+		9545	19862	7804	7814							0.029838879469025414
ESEEKKEGQG	10	Unmodified	_ESEEKKEGQG_					0	0	0			REV__CCDC180|p.H1510Ffs*11|1|0.03|ENSG00000197816|chr9:97370685-97370686|-/TT|frameshift_variant	REV__CCDC180|p.H1510Ffs*11|1|0.03|ENSG00000197816|chr9:97370685-97370686|-/TT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	560.3284912109375	2	560.759475	1119.5044	0.33221	0.00018629	-0.56587	-0.00031732	-0.23366	-0.00013102	560.7591145272305	73.164	1.2024	70.765	70.167	71.369	-2.3999					51	22	4	0	0	0	0.027028	1	6013	6013		18.262	0	1	133040	+		9546	15749	7805	7815	10459	10459					-0.050575547378457486
ESEIVKYVI	9	Unmodified	_ESEIVKYVI_					0	0	0		tr|A0A7D6VXJ2|A0A7D6VXJ2_9CLOTBacteriocinOS=ClostridiumintestinaleOX=36845GN=HZF06_13095PE=4SV=1	tr|A0A7D6VXJ2|A0A7D6VXJ2_9CLOTBacteriocinOS=ClostridiumintestinaleOX=36845GN=HZF06_13095PE=4SV=1	tr|A0A7D6VXJ2|A0A7D6VXJ2_9CLOTBacteriocinOS=ClostridiumintestinaleOX=36845GN=HZF06_13095PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3033447265625	2	540.30279	1078.59103	-1.3439	-0.00072612	1.3163	0.00071121	-0.027584	-1.4903E-05	540.3033043083178	124.06	1.3781	122.67	122.37	123.75	-1.3908					61	26	4	0	0	0	0.22961	1	11754	11754		71.296	1.6681	1	233120			9547	35285	7806	7816	10460	10460					0.05487476554662862
ESEKLVQLH	9	Unmodified	_ESEKLVQLH_					0	0	0			REV__nc|ENSG00000119397|Q7Z7A1-2|CNTRL	REV__nc|ENSG00000119397|Q7Z7A1-2|CNTRL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.3467407226562	2	541.795663	1081.57677	-1.2993	-0.00070397	0.63124	0.000342	-0.66809	-0.00036197	541.7960216792344	82.235	0.87263	79.552	79.204	80.076	-2.683					49	17	4	0	0	0	0.027462	1	6854	6854		32.812	3.6629	1	317380	+		9548	18439	7807	7817	10461	10461					0.03924824126374915
ESELNTASQKK	11	Unmodified	_ESELNTASQKK_					0	0	0			REV__nc|ENSG00000060749|Q2KHR3|QSER1	REV__nc|ENSG00000060749|Q2KHR3|QSER1	MULTI-MSMS	OvCa99_classI_Rep5	1	617.814208984375	2	617.817324	1233.62009	-1.0214	-0.00063104	-3.7637	-0.0023253	-4.7851	-0.0029563	617.8145668488586	34.185	0.52279	34.185	33.969	34.491	0					26	10	4	0	0	0	0.63561	1	1632	1632		41.427	2.1738	1	380800	+		9549	16742	7808	7818	10462	10462					0.012629691129859566
ESELTSLPL	9	Unmodified	_ESELTSLPL_					0	0	0			REV__ENSG00000215421|ENST00000299687|ZNF407	REV__ENSG00000215421|ENST00000299687|ZNF407	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.3004150390625	2	494.763497	987.512442	1.7296	0.00085576	-3.8765	-0.001918	-2.1469	-0.0010622	494.76235546711683	91.969	0.75739	91.969	91.837	92.594	0					23	17	2	0	0	0	0.027462	1	9958	9958		26.693	0	1	474450	+		9550	23316	7809	7819	10463	10463					0.01818624249574441
ESERRVLL	8	Unmodified	_ESERRVLL_					0	0	0			REV__ENSG00000100139|ENST00000215957|MICALL1	REV__ENSG00000100139|ENST00000215957|MICALL1	MULTI-MSMS	OvCa9_classI_Rep3	3	501.29058837890625	2	501.290548	1000.56654	-1.4695	-0.00073667	1.3149	0.00065914	-0.15466	-7.7529E-05	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.74992	1	10972	10972		26.693	0	1	97838	+		9551	17372	7810	7820	10464	10464					0.06628261191815454
ESEVDHLIV	9	Unmodified	_ESEVDHLIV_					0	0	0			REV__nc|ENSG00000139990|Q96JK2-3|DCAF5	REV__nc|ENSG00000139990|Q96JK2-3|DCAF5	MULTI-MSMS	OvCa9_classI_Rep3	3	520.7673950195312	2	520.766571	1039.51859	-0.63486	-0.00033061	0.077139	4.0171E-05	-0.55772	-0.00029044	520.766555060983	76.275	3.5537	73.903	73.518	77.072	-2.3715					215	69	5	0	0	0	0.19716	1	3917	3917		76.847	15.875	1	4347000	+		9552	28890	7811	7821	10465	10465					0.0004114248110909102
ESEVNGEQL	9	Unmodified	_ESEVNGEQL_					0	0	0			REV__ENSG00000120451|ENST00000265909|SNX19	REV__ENSG00000120451|ENST00000265909|SNX19	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.2418518066406	2	502.730186	1003.44582	-0.34885	-0.00017538	-1.0208	-0.0005132	-1.3697	-0.00068858	502.73045039319067	56.12	0.57121	56.12	55.888	56.459	0					16	13	2	0	0	0	0.027108	1	4609	4609		93.143	18.1	1	304550	+		9553	18500	7812	7822	10466	10466					-0.05576611312324076
ESEVVGTTSQ	10	Unmodified	_ESEVVGTTSQ_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.7998657226562	2	518.743293	1035.47203	-0.70857	-0.00036756	-4.2562	-0.0022079	-4.9648	-0.0025755	518.7408967666482	86.632	0.65352	84.456	84.18	84.834	-2.1768					15	12	2	0	0	0	0.026867	1	5144	5144		28.081	0	1	30278	+		9554	23342	7813	7823	10467	10467					-0.044283421408408685
ESEVVGTTSQ	10	Unmodified	_ESEVVGTTSQ_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-MATCH	OvCa9_classI_Rep2	2		2	518.743293	1035.47203	-0.5875	-0.00030476	-5.8503	-0.0030348	-6.4378	-0.0033396	518.740054249518	85.922	0.80961	84.431	84.146	84.956	-1.4906	-0.012278	-0.00033861	NaN	28.081	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17453	+		9555	23342	7813	7823							-0.044283421408408685
ESFGLEKDRYI	11	Unmodified	_ESFGLEKDRYI_					0	0	0		tr|A0A553SSD9|A0A553SSD9_NIACINitroreductasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_02780PE=3SV=1	tr|A0A553SSD9|A0A553SSD9_NIACINitroreductasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_02780PE=3SV=1	tr|A0A553SSD9|A0A553SSD9_NIACINitroreductasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_02780PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	452.7679748535156	3	452.897987	1355.67213	-0.041077	-1.8604E-05	2.9757	0.0013477	2.9346	0.0013291	452.8995006622774	33.459	0.68998	33.459	33.039	33.728	0					15	13	2	0	0	0	0.025668	1	1500	1500		22.562	0	1	20911			9556	34363	7814	7824	10468	10468					0.008521325267793145
ESFGVKKV	8	Unmodified	_ESFGVKKV_					0	0	0			REV__tr|A0A553SR44|A0A553SR44_NIACINa+/H+antiporterNhaCOS=NialliacirculansOX=1397GN=CEQ21_00265PE=3SV=1	REV__tr|A0A553SR44|A0A553SR44_NIACINa+/H+antiporterNhaCOS=NialliacirculansOX=1397GN=CEQ21_00265PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	447.73785400390625	2	447.258185	892.501818	-0.082805	-3.7035E-05	0.084821	3.7937E-05	0.0020156	9.015E-07	447.25828610249243	65.517	0.23875	65.517	65.426	65.665	0					8	5	2	0	0	0	0.028476	1	6031	6031		24.203	0	1	155720	+		9557	30691	7815	7825	10469	10469					0.05126686385813173
ESFHLRGVT	9	Unmodified	_ESFHLRGVT_					0	0	0			REV__ENSG00000124920|ENST00000278836|MYRF	REV__ENSG00000124920|ENST00000278836|MYRF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.2528686523438	2	523.274898	1044.53524	0.41273	0.00021597	-0.4612	-0.00024133	-0.04847	-2.5363E-05	523.2742450808468	84.462	0.69475	81.8	81.504	82.198	-2.6629					20	14	2	0	0	0	0.027462	1	7079	7079		27.882	8.7787	1	26438	+		9558	18710	7816	7826	10470	10470					0.014756881577113745
ESFIFKKI	8	Unmodified	_ESFIFKKI_					0	0	0		ENST00000515408.5_1_5:112351630-112351813:+|nuORF	ENST00000515408.5_1_5:112351630-112351813:+|nuORF	ENST00000515408.5_1_5:112351630-112351813:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.27880859375	2	506.29731	1010.58007	-0.15201	-7.6963E-05	-4.4278	-0.0022418	-4.5798	-0.0023187	506.2950572572422	61.347	1.398	57.917	57.395	58.793	-3.43					43	28	2	0	0	0	0.028476	1	4168	4168		42.396	24.134	1	126740			9559	13044	7817	7827	10471	10471					0.07520118971035572
ESFIIKGSEI	10	Unmodified	_ESFIIKGSEI_					0	0	0			REV__nc|ENSG00000083520|Q9Y2L1-2|DIS3	REV__nc|ENSG00000083520|Q9Y2L1-2|DIS3	MULTI-MSMS	OvCa99_classI_Rep5	1	561.8076782226562	2	561.805697	1121.59684	2.61	0.0014663	-0.45435	-0.00025525	2.1557	0.0012111	561.8053625203329	100.06	0.6702	100.06	99.817	100.49	0					39	15	4	0	0	0	0.13632	1	11087	11087		104.42	7.7585	1	1944700	+		9560	17104	7818	7828	10472	10472					0.04090575066334168
ESFILKVVQ	9	Unmodified	_ESFILKVVQ_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8147583007812	2	531.813325	1061.6121	-0.39245	-0.00020871	-0.5038	-0.00026793	-0.89626	-0.00047664	531.813178072344	112.13	2.6147	112.01	111.59	114.2	-0.12174					128	52	4	0	0	0	0.14855	1	10655	10655		85.161	2.4103	1	1017100			9561	2511	7819	7829	10473	10473					0.08375486654176711
ESFKVKDEV	9	Unmodified	_ESFKVKDEV_					0	0	0		nc|ENSG00000180347|Q6ZRS4-3|ITPRID1;ENSG00000180347|ENST00000615280|ITPRID1;nc|ENSG00000180347|Q6ZRS4-4|ITPRID1	nc|ENSG00000180347|Q6ZRS4-3|ITPRID1	nc|ENSG00000180347|Q6ZRS4-3|ITPRID1	MULTI-MSMS	OvCa9_classI_Rep3	3	540.7841186523438	2	540.782222	1079.54989	-0.19797	-0.00010706	-0.32775	-0.00017724	-0.52572	-0.0002843	540.7816111143624	95.811	1.3461	93.982	93.429	94.775	-1.8286					65	26	4	0	0	0	0.35444	1	6272	6272		56.721	1.2168	1	290310			9562	7869	7820	7830	10474	10474					0.013297155152031337
ESFSSEQEA	9	Unmodified	_ESFSSEQEA_					0	0	0		ENSG00000179364|ENST00000447393|PACS2;ENST00000552138.5_1_14:105821400-105836438:+|nuORF;nc|ENSG00000179364|Q86VP3-4|PACS2;nc|ENSG00000179364|Q86VP3|PACS2	ENSG00000179364|ENST00000447393|PACS2	ENSG00000179364|ENST00000447393|PACS2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.8017272949219	2	507.206544	1012.39853	-1.2487	-0.00063333	-3.822	-0.0019386	-5.0707	-0.0025719	507.2045569862502	54.215	1.2301	50.967	50.517	51.747	-3.2474					35	23	2	0	0	0	0.027426	1	3404	3404		66.429	13.493	1	22453			9563	7818	7821	7831	10475	10475					-0.10716890583319127
ESFVITKDN	9	Unmodified	_ESFVITKDN_					0	0	0			REV__nc|ENSG00000137812|Q8NG31-3|KNL1	REV__nc|ENSG00000137812|Q8NG31-3|KNL1	MULTI-MSMS	OvCa99_classI_Rep5	1	526.7701416015625	2	526.766571	1051.51859	0.78887	0.00041555	3.6139	0.0019037	4.4028	0.0023193	526.768368401263	150.82	0.90779	150.82	150.44	151.35	0					42	17	3	0	0	0	0.38969	1	17642	17642		52.937	1.6012	1	681390	+		9564	19480	7822	7832	10476	10476					-0.005108575189069597
ESFVQHVLV	9	Unmodified	_ESFVQHVLV_					0	0	0			REV__nc|ENSG00000170324|Q68DX3-2|FRMPD2	REV__nc|ENSG00000170324|Q68DX3-2|FRMPD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7905883789062	2	529.287474	1056.5604	1.9105	0.0010112	1.903	0.0010073	3.8135	0.0020184	529.2886194699798	78.16	1.488	78.16	77.714	79.202	0					74	35	4	0	0	0	0.027455	1	8010	8010		26.693	0	1	2725700	+		9565	21532	7823	7833	10477	10477					0.034377429602727716
ESGKGFVKVI	10	Unmodified	_ESGKGFVKVI_					0	0	0			REV__tr|A0A7D6VVX0|A0A7D6VVX0_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06830PE=3SV=1	REV__tr|A0A7D6VVX0|A0A7D6VVX0_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06830PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.7913208007812	2	532.310949	1062.60735	-1.7842	-0.00094974	3.4548	0.001839	1.6706	0.00088927	532.8159590901064	81.501	0.14752	78.79	78.69	78.838	-2.7106					4	2	2	0	0	0	0.026867	1	6701	6701		28.081	3.5623	1	13481	+		9566	31738	7824	7834	10478	10478					0.07854602511406483
ESGKQNILNI	10	Unmodified	_ESGKQNILNI_					0	0	0			REV__nc|ENSG00000211456|Q9NTJ5-2|SACM1L	REV__nc|ENSG00000211456|Q9NTJ5-2|SACM1L	MULTI-MSMS	OvCa99_classI_Rep5	1	558.2999267578125	2	558.306395	1114.59824	0.58837	0.00032849	-1.0865	-0.00060658	-0.49809	-0.00027809	558.3057781598629	45.18	1.0025	45.18	44.932	45.934	0					55	22	4	0	0	0	0.42082	1	3134	3134		65.465	5.3471	1	5230800	+		9567	23244	7825	7835	10479	10479					0.04552209155099263
ESGPCASGSA	10	Unmodified	_ESGPCASGSA_					0	0	0			REV__ENSG00000198556|ENST00000331410|ZNF789	REV__ENSG00000198556|ENST00000331410|ZNF789	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1717834472656	2	433.17145	864.328346	1.9505	0.00084491	-0.84733	-0.00036704	1.1032	0.00047787	433.17100760562903	63.152	4.2639	60.118	58.202	62.466	-3.0339					141	92	2	0	0	0	0.73378	1	2346	2346		26.693	1.2427	1	38128	+		9568	23030	7826	7836	10480	10480					-0.10924467452775843
ESGRLTTKV	9	Unmodified	_ESGRLTTKV_					0	0	0			REV__ENST00000465105.5_1_2:71295813-71297857:+|nuORF	REV__ENST00000465105.5_1_2:71295813-71297857:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.78277587890625	2	495.782556	989.550559	-1.0728	-0.00053187	-2.3312	-0.0011558	-3.404	-0.0016876	495.7812739834416	44.548	2.2506	41.51	40.762	43.013	-3.0385					117	43	4	0	0	0	0.48324	1	2193	2193		44.117	1.7207	1	1208700	+		9569	26163	7827	7837	10481	10481					0.05536554954881012
ESGVALGAPAL	11	Unmodified	_ESGVALGAPAL_					0	0	0		ENST00000541873.6_1_19:19304755-19309594:+|nuORF	ENST00000541873.6_1_19:19304755-19309594:+|nuORF	ENST00000541873.6_1_19:19304755-19309594:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3235168457031	2	492.771657	983.528761	-0.83698	-0.00041244	0.51721	0.00025487	-0.31977	-0.00015757	492.772048532523	116.24	0.9385	115.2	114.85	115.79	-1.0414					30	18	3	0	0	0	0.025366	1	8654	8654		44.117	17.424	1	31961			9570	13470	7828	7838	10482	10482					0.036337502063247484
ESGVALGAPAL	11	Unmodified	_ESGVALGAPAL_					0	0	0		ENST00000541873.6_1_19:19304755-19309594:+|nuORF	ENST00000541873.6_1_19:19304755-19309594:+|nuORF	ENST00000541873.6_1_19:19304755-19309594:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	492.771657	983.528761	0.0029775	1.4672E-06	-1.4318	-0.00070557	-1.4289	-0.0007041	492.77118651683395	115.54	0.69067	115.42	115	115.69	-0.11777	0.11225	-0.0015313	NaN	44.117	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18388			9571	13470	7828	7838							0.036337502063247484
ESHILLILL	9	Unmodified	_ESHILLILL_					0	0	0			REV__ENSG00000196539|ENST00000359594|OR2T3	REV__ENSG00000196539|ENST00000359594|OR2T3	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.3720092773438	2	525.831517	1049.64848	-0.18035	-9.4831E-05	-3.4253	-0.0018012	-3.6057	-0.001896	525.8299556109919	57.271	0.51845	57.271	56.961	57.48	0					14	11	2	0	0	0	0.027462	1	4788	4788		24.203	1.1603	1	112140	+		9572	22355	7829	7839	10483	10483					0.12564363550905
ESHKRLYE	8	Unmodified	_ESHKRLYE_					0	0	0			REV__tr|A0A7D6VUB7|A0A7D6VUB7_9CLOTDNApolymeraseIIIsubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_02645PE=3SV=1	REV__tr|A0A7D6VUB7|A0A7D6VUB7_9CLOTDNApolymeraseIIIsubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_02645PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.2396850585938	2	531.272355	1060.53016	0.15331	8.1448E-05	3.9781	0.0021135	4.1315	0.0021949	531.27355124395	62.922	0.23689	62.922	62.703	62.94	0					8	5	2	0	0	0	0.028476	1	5633	5633		33.516	0	1	144210	+		9573	31666	7830	7840	10484	10484					0.0023138429510254355
ESHLKQNAH	9	Unmodified	_ESHLKQNAH_					0	0	0		ZNF532|p.M41L|1|0.1|ENSG00000074657|chr18:58918408-58918408|A/C|missense_variant	ZNF532|p.M41L|1|0.1|ENSG00000074657|chr18:58918408-58918408|A/C|missense_variant	ZNF532|p.M41L|1|0.1|ENSG00000074657|chr18:58918408-58918408|A/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.7413330078125	2	532.267604	1062.52066	-0.53807	-0.0002864	-0.02544	-1.3541E-05	-0.56351	-0.00029994	532.26694121352	28.982	0.64764	28.982	28.789	29.436	0					20	12	4	0	0	0	0.027462	1	1039	1039		42.396	32.69	1	43333			9574	36323	7831	7841	10485	10485					-0.008103839904379129
ESHMFVCIL	9	Unmodified	_ESHMFVCIL_					0	0	0		ENST00000575963.1_1_17:79632490-79632646:-|nuORF	ENST00000575963.1_1_17:79632490-79632646:-|nuORF	ENST00000575963.1_1_17:79632490-79632646:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	539.759033203125	2	539.756638	1077.49872	1.492	0.0008053	3.9779	0.0021471	5.4698	0.0029524	539.758483241127	138.45	1.0601	138.45	138.11	139.17	0					58	21	4	0	0	0	0.42057	1	16138	16138		50.025	11.003	1	714950			9575	13944	7832	7842	10486	10486					-0.03692648054857273
ESHRVSVL	8	Unmodified	_ESHRVSVL_					0	0	0		ENSG00000121904|ENST00000373381|CSMD2;nc|ENSG00000121904|Q7Z408|CSMD2	ENSG00000121904|ENST00000373381|CSMD2	ENSG00000121904|ENST00000373381|CSMD2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.7883605957031	2	463.756341	925.498129	-1.1321	-0.00052503	1.4045	0.00065133	0.27235	0.0001263	463.75671509106155	53.213	1.5268	50.005	49.746	51.273	-3.208					40	29	2	0	0	0	0.028476	1	3219	3219		49.442	1.5259	1	149980			9576	3506	7833	7843	10487	10487					0.03240016611948704
ESIEAQIEA	9	Unmodified	_ESIEAQIEA_					0	0	0			REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.2989196777344	2	495.242929	988.471305	2.2373	0.001108	-0.28834	-0.0001428	1.949	0.00096521	495.2426235854972	86.805	0.53717	86.805	86.637	87.174	0					28	12	3	0	0	0	0.027441	1	9166	9166		49.442	0	1	774800	+		9577	16668	7834	7844	10488	10488					-0.023391367898966564
ESIEYNPPL	9	Unmodified	_ESIEYNPPL_					0	0	0			REV__nc|ENSG00000205057|Q5K130|CLLU1-AS1	REV__nc|ENSG00000205057|Q5K130|CLLU1-AS1	MULTI-MSMS	OvCa99_classI_Rep5	1	531.2569580078125	2	531.261122	1060.50769	-0.023855	-1.2673E-05	-3.771	-0.0020034	-3.7949	-0.0020161	531.2588923508115	56.797	0.68254	56.797	56.498	57.18	0					42	15	4	0	0	0	0.24951	1	4741	4741		68.787	4.5796	1	1242700	+		9578	29106	7835	7845	10489	10489					-0.020142598931897737
ESIEYNPPL	9	Unmodified	_ESIEYNPPL_					0	0	0			REV__nc|ENSG00000205057|Q5K130|CLLU1-AS1	REV__nc|ENSG00000205057|Q5K130|CLLU1-AS1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	531.261122	1060.50769	-0.023855	-1.2673E-05	-3.771	-0.0020034	-3.7949	-0.0020161	531.2588923508115	56.797	0.68254	56.797	56.498	57.18	0	0	0	NaN	68.787	42	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1242700	+		9579	29106	7835	7845							-0.020142598931897737
ESIGEEAEEP	10	Unmodified	_ESIGEEAEEP_					0	0	0			REV__ENSG00000125827|ENST00000246024|TMX4	REV__ENSG00000125827|ENST00000246024|TMX4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.7954711914062	2	545.232758	1088.45096	-2.7237	-0.0014851	2.741	0.0014945	0.017272	9.4172E-06	545.2342771648783	88.341	0.75882	85.738	85.528	86.286	-2.6027					23	14	2	0	0	0	0.026849	1	7597	7597		32.812	0	1	36880	+		9580	18750	7836	7846	10490	10490					-0.08972352240357395
ESIGGLLGPPL	11	Unmodified	_ESIGGLLGPPL_					0	0	0		ENSG00000174327|ENST00000308027|SLC16A13	ENSG00000174327|ENST00000308027|SLC16A13	ENSG00000174327|ENST00000308027|SLC16A13	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.7692260742188	2	526.802957	1051.59136	0.72699	0.00038298	-1.1711	-0.00061694	-0.44411	-0.00023396	526.8021943788635	127.1	1.8278	126.87	126.54	128.37	-0.2359					65	36	2	0	0	0	0.025416	1	12475	12475		26.693	0	1	41524			9581	7456	7837	7847	10491	10491					0.06762896274517516
ESIISPSLE	9	Unmodified	_ESIISPSLE_					0	0	0		ZNF507|p.S166Rfs*9|1|0.07|ENSG00000168813|chr19:32353326-32353329|AGCC/-|frameshift_variant;nc|ENSG00000168813|Q8TCN5-2|ZNF507;ENSG00000168813|ENST00000355898|ZNF507	ZNF507|p.S166Rfs*9|1|0.07|ENSG00000168813|chr19:32353326-32353329|AGCC/-|frameshift_variant	ZNF507|p.S166Rfs*9|1|0.07|ENSG00000168813|chr19:32353326-32353329|AGCC/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.2803039550781	2	487.755672	973.496792	-0.19419	-9.4718E-05	-3.1092	-0.0015166	-3.3034	-0.0016113	487.75349503416925	94.387	0.40047	93.288	93.01	93.411	-1.0995					11	7	2	0	0	0	0.027279	1	8463	8463		34.173	0	1	11524			9582	6945	7838	7848	10492	10492					0.008983377325307629
ESIIYSRGPML	11	Unmodified	_ESIIYSRGPML_					0	0	0			REV__tr|A0A7D6VUS0|A0A7D6VUS0_9CLOTAldehydedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08110PE=3SV=1	REV__tr|A0A7D6VUS0|A0A7D6VUS0_9CLOTAldehydedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08110PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	634.2894287109375	2	633.331556	1264.64856	1.1346	0.00071856	2.5011	0.0015841	3.6357	0.0023026	633.3336222792198	132.29	0.37392	132.29	132.09	132.46	0					13	7	2	0	0	0	0.025912	1	15377	15377		36.447	14.761	1	81376	+		9583	31691	7839	7849	10493	10493					0.026819954885922925
ESIKNISSL	9	Unmodified	_ESIKNISSL_					0	0	0		tr|A0A7D6VSD9|A0A7D6VSD9_9CLOTSporulationintegralmembraneproteinYlbJOS=ClostridiumintestinaleOX=36845GN=ylbJPE=4SV=1	tr|A0A7D6VSD9|A0A7D6VSD9_9CLOTSporulationintegralmembraneproteinYlbJOS=ClostridiumintestinaleOX=36845GN=ylbJPE=4SV=1	tr|A0A7D6VSD9|A0A7D6VSD9_9CLOTSporulationintegralmembraneproteinYlbJOS=ClostridiumintestinaleOX=36845GN=ylbJPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.2962341308594	2	495.776939	989.539325	-2.7087	-0.0013429	2.2612	0.0011211	-0.4475	-0.00022186	495.77745954249065	88.122	0.45486	85.519	85.377	85.832	-2.6027					14	8	2	0	0	0	0.027462	1	7521	7521		32.812	1.2826	1	22398			9584	35020	7840	7850	10494	10494					0.04413732860757591
ESIKNISSL	9	Unmodified	_ESIKNISSL_					0	0	0		tr|A0A7D6VSD9|A0A7D6VSD9_9CLOTSporulationintegralmembraneproteinYlbJOS=ClostridiumintestinaleOX=36845GN=ylbJPE=4SV=1	tr|A0A7D6VSD9|A0A7D6VSD9_9CLOTSporulationintegralmembraneproteinYlbJOS=ClostridiumintestinaleOX=36845GN=ylbJPE=4SV=1	tr|A0A7D6VSD9|A0A7D6VSD9_9CLOTSporulationintegralmembraneproteinYlbJOS=ClostridiumintestinaleOX=36845GN=ylbJPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	495.776939	989.539325	0.93567	0.00046388	-1.5692	-0.00077797	-0.63352	-0.00031408	495.77605921080044	87.079	0.80842	85.648	85.281	86.09	-1.4311	0.12233	-0.0018176	NaN	37.812	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21161			9585	35020	7840	7850							0.04413732860757591
ESILIVQTF	9	Unmodified	_ESILIVQTF_					0	0	0			REV__ENST00000380909.8_2_22:50637297-50637582:+|nuORF	REV__ENST00000380909.8_2_22:50637297-50637582:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	525.2960815429688	2	525.297507	1048.58046	-0.74249	-0.00039003	-2.9129	-0.0015301	-3.6554	-0.0019202	525.2962332041591	48.014	1.342	45.304	44.885	46.228	-2.7097					84	26	5	0	0	0	0.56189	1	2983	2983		36.447	4.9169	1	278320	+		9586	25188	7841	7851	10495	10495					0.05811493900228015
ESILKHID	8	Unmodified	_ESILKHID_					0	0	0			REV__tr|A0A7D6ZKA6|A0A7D6ZKA6_9CLOTUvrD-helicasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04410PE=4SV=1	REV__tr|A0A7D6ZKA6|A0A7D6ZKA6_9CLOTUvrD-helicasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04410PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	476.7951965332031	2	477.766374	953.518196	-0.034633	-1.6546E-05	4.341	0.002074	4.3064	0.0020574	477.7684006812682	110.75	0.49478	110.61	110.39	110.88	-0.13961					10	9	2	0	0	0	0.028476	1	10435	10435		44.117	8.9161	1	13205	+		9587	32103	7842	7852	10496	10496					0.0395776755190127
ESILKVSQP	9	Unmodified	_ESILKVSQP_					0	0	0		ENSG00000203485|ENST00000392634|INF2;nc|ENSG00000203485|Q27J81-2|INF2	ENSG00000203485|ENST00000392634|INF2	ENSG00000203485|ENST00000392634|INF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.7838134765625	2	500.787307	999.560061	-0.13989	-7.0055E-05	1.9037	0.00095336	1.7638	0.0008833	501.29028386519803	69.196	0.49394	69.196	68.939	69.433	0					15	11	2	0	0	0	0.027433	1	6570	6570		45.972	18.09	1	214630			9588	8921	7843	7853	10497	10497					0.06026323240428155
ESIPNRSLS	9	Unmodified	_ESIPNRSLS_					0	0	0			REV__nc|ENSG00000171962|Q9H069-2|DRC3	REV__nc|ENSG00000171962|Q9H069-2|DRC3	MULTI-MSMS	OvCa99_classI_Rep5	1	501.7640075683594	2	501.764363	1001.51417	-0.00050248	-2.5213E-07	-0.69501	-0.00034873	-0.69551	-0.00034898	501.7639969726405	31.243	0.62901	31.243	30.93	31.559	0					37	12	4	0	0	0	0.46377	1	1290	1290		45.952	0	1	1762200	+		9589	21663	7844	7854	10498	10498					0.013476780582095671
ESIPTTPLI	9	Unmodified	_ESIPTTPLI_					0	0	0			REV__chr11:75400777-75404782|116|517.47|0.4|10.36|+|0|RPS3,None|1	REV__chr11:75400777-75404782|116|517.47|0.4|10.36|+|0|RPS3,None|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.7757263183594	2	485.776408	969.538263	0.21375	0.00010384	-0.41976	-0.00020391	-0.20601	-0.00010008	485.7760657252833	115.78	1.1958	114.39	114.07	115.26	-1.3977					54	23	4	0	0	0	0.16524	1	10791	10791		82.305	13.518	1	160370	+		9590	15869	7845	7855	10499	10499					0.05227518491858518
ESIPTTPLI	9	Unmodified	_ESIPTTPLI_					0	0	0			REV__chr11:75400777-75404782|116|517.47|0.4|10.36|+|0|RPS3,None|1	REV__chr11:75400777-75404782|116|517.47|0.4|10.36|+|0|RPS3,None|1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	485.776408	969.538263	-0.077489	-3.7642E-05	0.1328	6.4512E-05	0.055314	2.687E-05	485.77630680843146	114.61	1.3818	114.5	114.16	115.54	-0.11777	0.061087	0.0002905	NaN	82.305	59	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62953	+		9591	15869	7845	7855							0.05227518491858518
ESIRRRLQ	8	Unmodified	_ESIRRRLQ_					0	0	0			REV__ENSG00000206113|ENST00000635017|CFAP99	REV__ENSG00000206113|ENST00000635017|CFAP99	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7905883789062	2	529.314889	1056.61522	1.2915	0.00068362	-2.3724	-0.0012558	-1.0809	-0.00057214	530.3165796279022	79.262	0.84875	79.262	78.625	79.474	0					32	20	3	0	0	0	0.028476	1	8010	8010		18.324	0	1	392350	+		9592	23235	7846	7856	10500	10500					0.08918174551558877
ESITKRTGL	9	Unmodified	_ESITKRTGL_					0	0	0			REV__ENSG00000124019|ENST00000409685|FAM124B	REV__ENSG00000124019|ENST00000409685|FAM124B	MULTI-MSMS	OvCa99_classI_Rep5	1	502.7914733886719	2	502.790381	1003.56621	-0.8476	-0.00042616	0.41753	0.00020993	-0.43006	-0.00021623	502.7904166943511	50.183	0.96296	50.183	49.856	50.819	0					69	21	6	0	0	0	0.12515	1	3790	3790		90.37	8.1293	1	3373700	+		9593	18660	7847	7857	10501	10501					0.06456841471947428
ESITKRTGL	9	Unmodified	_ESITKRTGL_					0	0	0			REV__ENSG00000124019|ENST00000409685|FAM124B	REV__ENSG00000124019|ENST00000409685|FAM124B	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	502.790381	1003.56621	-0.8476	-0.00042616	0.41753	0.00020993	-0.43006	-0.00021623	502.7904166943511	50.183	0.96296	50.183	49.856	50.819	0	0	0	NaN	90.37	69	21	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3373700	+		9594	18660	7847	7857							0.06456841471947428
ESIVQEEKKKL	11	Unmodified	_ESIVQEEKKKL_					0	0	0		nc|ENSG00000167202|Q9UPU7-2|TBC1D2B;ENSG00000167202|ENST00000300584|TBC1D2B	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	MULTI-MSMS	OvCa9_classI_Rep2	2	444.2587585449219	3	444.257403	1329.75038	1.0899	0.00048419	-1.3045	-0.00057952	-0.21458	-9.5328E-05	444.2567845776039	56.956	1.1408	54.164	53.881	55.022	-2.792					57	22	3	0	0	0	0.20362	1	4043	4043		79.489	12.569	1	188070			9595	6770	7848	7858	10502	10502					0.09869565111989687
ESIVQEEKKKL	11	Unmodified	_ESIVQEEKKKL_					0	0	0		nc|ENSG00000167202|Q9UPU7-2|TBC1D2B;ENSG00000167202|ENST00000300584|TBC1D2B	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	444.257403	1329.75038	-0.05047	-2.2422E-05	-0.54043	-0.00024009	-0.5909	-0.00026251	444.25700208429606	57.865	1.2633	54.52	53.934	55.197	-3.3449	0.17831	0.00090138	NaN	79.489	39	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	270150			9596	6770	7848	7858							0.09869565111989687
ESKAGFIGII	10	Unmodified	_ESKAGFIGII_					0	0	0		tr|A0A7D6ZTM0|A0A7D6ZTM0_9CLOTPhageholinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11730PE=4SV=1	tr|A0A7D6ZTM0|A0A7D6ZTM0_9CLOTPhageholinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11730PE=4SV=1	tr|A0A7D6ZTM0|A0A7D6ZTM0_9CLOTPhageholinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11730PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	518.2985229492188	2	517.797675	1033.5808	0.88779	0.00045969	-4.1933	-0.0021713	-3.3055	-0.0017116	518.2958569897511	109.73	1.2522	109.73	109.24	110.49	0					73	27	5	0	0	0	0.47142	1	12422	12422		58.23	6.8945	1	1557500			9597	35754	7849	7859	10503	10503					0.06534913620089355
ESKAGFIGII	10	Unmodified	_ESKAGFIGII_					0	0	0		tr|A0A7D6ZTM0|A0A7D6ZTM0_9CLOTPhageholinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11730PE=4SV=1	tr|A0A7D6ZTM0|A0A7D6ZTM0_9CLOTPhageholinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11730PE=4SV=1	tr|A0A7D6ZTM0|A0A7D6ZTM0_9CLOTPhageholinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11730PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.79833984375	2	517.797675	1033.5808	0.19976	0.00010344	-0.96126	-0.00049774	-0.7615	-0.0003943	517.7971571114142	111.44	1.5176	109.93	109.58	111.1	-1.5111					48	28	3	0	0	0	0.32926	1	10260	10260		77.318	2.2743	1	597920			9598	35754	7849	7859	10504	10504					0.06534913620089355
ESKFPKFLEK	10	Unmodified	_ESKFPKFLEK_					0	0	0		nc|ENSG00000137474|Q13402-5|MYO7A	nc|ENSG00000137474|Q13402-5|MYO7A	nc|ENSG00000137474|Q13402-5|MYO7A	MULTI-SECPEP	OvCa9_classI_Rep2	2	417.9156494140625	3	418.236051	1251.68632	-0.66686	-0.0002789	-2.4418	-0.0010212	-3.1087	-0.0013002	418.23466460885015	54.377	0.84703	51.563	51.275	52.122	-2.8139					37	16	4	0	0	0	0.027062	1	3695	3695		26.063	6.0329	1	51787			9599	15041	7850	7860	10505	10505					0.07054829745720781
ESKIFRIV	8	Unmodified	_ESKIFRIV_					0	0	0		ETV6|p.L376Hfs*12|1|0.06|ENSG00000139083|chr12:11884559-11884560|-/CCATGATGTC|frameshift_variant;ENSG00000139083|ENST00000396373|ETV6	ETV6|p.L376Hfs*12|1|0.06|ENSG00000139083|chr12:11884559-11884560|-/CCATGATGTC|frameshift_variant	ETV6|p.L376Hfs*12|1|0.06|ENSG00000139083|chr12:11884559-11884560|-/CCATGATGTC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.3045654296875	2	496.300384	990.586216	3.3475	0.0016613	3.6328	0.001803	6.9803	0.0034643	496.30213048419296	132.62	4.7473	131.12	130.38	135.12	-1.5014					178	95	2	0	0	0	0.75915	1	13070	13070		20.482	0	1	64200			9600	4740	7851	7861	10506	10506					0.09054637202564209
ESKIRVLLQER	11	Unmodified	_ESKIRVLLQER_					0	0	0		nc|ENSG00000072571|O75330-2|HMMR;ENST00000517936.1_1_5:162887680-162896865:+|nuORF	nc|ENSG00000072571|O75330-2|HMMR	nc|ENSG00000072571|O75330-2|HMMR	MSMS	OvCa9_classI_Rep4_	4	457.60723876953125	3	457.608659	1369.80415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	157.37	1	155.83	155.33	156.33	-1.545								0	0	0	0.19474	1	15553	15553		15.921	1.227	1				9601	14889	7852	7862	10507	10507					0.13403782334376046
ESKITGWPF	9	Unmodified	_ESKITGWPF_					0	0	0			REV__tr|A0A7D6VSZ1|A0A7D6VSZ1_9CLOTMembrane-associatedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05945PE=4SV=1	REV__tr|A0A7D6VSZ1|A0A7D6VSZ1_9CLOTMembrane-associatedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05945PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.7921142578125	2	532.7742	1063.53385	0.83978	0.00044741	4.3124	0.0022975	5.1522	0.0027449	532.776103357538	105.65	0.31042	104.3	104.15	104.46	-1.3482					8	5	2	0	0	0	0.027462	1	7418	7418		25.45	1.2474	1	18170	+		9602	31558	7853	7863	10508	10508					0.004620540689529662
ESKKPSVPE	9	Unmodified	_ESKKPSVPE_					0	0	0		ENST00000471760.5_2_7:7680434-7728976:+|nuORF;ENST00000469183.5_2_7:7713002-8043579:+|nuORF;ENSG00000219545|ENST00000682710|UMAD1	ENST00000471760.5_2_7:7680434-7728976:+|nuORF	ENST00000471760.5_2_7:7680434-7728976:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.6795349121094	2	500.769114	999.523675	1.3651	0.00068361	-1.7139	-0.00085825	-0.34875	-0.00017464	500.7684317687476	123.08	0.6557	123.08	122.86	123.51	0					16	13	2	0	0	0	0.027462	1	14159	14159		29.15	11.785	1	68052			9603	9222	7854	7864	10509	10509					0.023894463437159175
ESKKPVVTF	9	Unmodified	_ESKKPVVTF_					0	0	0		ENST00000574957.1_1_16:3075898-3076060:+|nuORF;ENST00000576143.5_1_16:3074279-3076060:+|nuORF;ENST00000571046.1_1_16:3074279-3076290:+|nuORF;ENST00000574498.5_1_16:3074279-3076221:+|nuORF;THOC6|p.A99Vfs*179|1|0.07|ENSG00000131652|chr16:3026137-3026138|-/TCTCACCATGTGGGAAGTTT|frameshift_variant;THOC6|p.P127Ffs*153|1|0.04|ENSG00000131652|chr16:3026380-3026381|-/TTTCATACGTCCCAGGCAGGCCTCAT|frameshift_variant;nc|ENSG00000131652|Q86W42-3|THOC6;nc|ENSG00000131652|Q86W42-2|THOC6;ENSG00000131652|ENST00000326266|THOC6	ENST00000574957.1_1_16:3075898-3076060:+|nuORF	ENST00000574957.1_1_16:3075898-3076060:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	518.2977294921875	2	517.797675	1033.5808	0.88779	0.00045969	-4.1933	-0.0021713	-3.3055	-0.0017116	518.2958569897511	109.73	1.2522	109.73	109.24	110.49	0					73	27	5	0	0	0	0.46356	1	12434	12434		45.972	3.108	1	1557500			9604	4080	7855	7865	10510	10510					0.06534913620089355
ESKLALLHDC	10	Unmodified	_ESKLALLHDC_					0	0	0		ENST00000506603.5_1_5:79058805-79095436:+|nuORF	ENST00000506603.5_1_5:79058805-79095436:+|nuORF	ENST00000506603.5_1_5:79058805-79095436:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.8113403320312	2	564.789524	1127.56449	1.2084	0.00068251	3.3447	0.001889	4.5531	0.0025716	564.7911183786954	109.54	0.4751	107.81	107.68	108.15	-1.7256					10	8	2	0	0	0	0.026646	1	10091	10091		53.089	0	1	11239			9605	12912	7856	7866	10511	10511					0.005814643917119611
ESKLKINL	8	Unmodified	_ESKLKINL_					0	0	0		ENSG00000075218|ENST00000454366|GTSE1	ENSG00000075218|ENST00000454366|GTSE1	ENSG00000075218|ENST00000454366|GTSE1	MULTI-SECPEP	OvCa9_classI_Rep2	2	473.7637634277344	2	472.792392	943.570232	-0.96012	-0.00045394	1.1102	0.00052488	0.15005	7.0942E-05	472.7927927339124	56.155	0.89166	53.351	52.928	53.82	-2.804					27	17	2	0	0	0	0.028476	1	3925	3925		18.324	0	1	39077			9606	1525	7857	7867	10512	10512					0.09618930965643813
ESKLTWVF	8	Unmodified	_ESKLTWVF_					0	0	0			REV__tr|A0A7D7A1E1|A0A7D7A1E1_9CLOTCob(I)yrinicacida,c-diamideadenosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14915PE=4SV=1	REV__tr|A0A7D7A1E1|A0A7D7A1E1_9CLOTCob(I)yrinicacida,c-diamideadenosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14915PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	505.2709045410156	2	505.271293	1008.52803	2.8855	0.0014579	-2.6062	-0.0013168	0.27929	0.00014112	505.2702235282611	90.08	0.78979	90.08	89.556	90.346	0					46	18	4	0	0	0	0.53531	1	9661	9661		73.975	4.3471	1	3265900	+		9607	32487	7858	7868	10513	10513					0.024109555572863428
ESKPFVDLI	9	Unmodified	_ESKPFVDLI_					0	0	0			REV__tr|A0A553SKY0|A0A553SKY0_NIACISigma-54factorinteractiondomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_19590PE=4SV=1	REV__tr|A0A553SKY0|A0A553SKY0_NIACISigma-54factorinteractiondomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_19590PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7581176757812	2	524.289682	1046.56481	-1.0189	-0.00053421	1.9819	0.0010391	0.96295	0.00050487	524.7909513049685	49.409	0.3921	49.409	49.287	49.679	0					11	8	2	0	0	0	0.027462	1	3706	3706		47.657	12.039	1	372730	+		9608	30165	7859	7869	10514	10514					0.04339207383191024
ESKPKSKP	8	Unmodified	_ESKPKSKP_					0	0	0			REV__Harlequin-int_dup68|chr1:206053001-206053902:+|8.701031500351274|0.4316687424735471|4.33|427.0|42|2|anti-sense	REV__Harlequin-int_dup68|chr1:206053001-206053902:+|8.701031500351274|0.4316687424735471|4.33|427.0|42|2|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	450.7625732421875	2	450.761092	899.507631	-0.084137	-3.7926E-05	0.28663	0.0001292	0.20249	9.1274E-05	450.76104374223536	53.824	1.4162	53.824	53.564	54.98	0					72	33	4	0	0	0	0.61436	1	4320	4320		60.972	5.4677	1	4210900	+		9609	28194	7860	7870	10515	10515					0.05385784897475787
ESKQNGIGIN	10	Unmodified	_ESKQNGIGIN_					0	0	0		ENSG00000196911|ENST00000368564|KPNA5	ENSG00000196911|ENST00000368564|KPNA5	ENSG00000196911|ENST00000368564|KPNA5	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7905883789062	2	530.275095	1058.53564	1.6028	0.00084991	3.5873	0.0019022	5.19	0.0027521	530.2773355450028	78.85	0.24554	78.85	78.709	78.955	0					9	5	2	0	0	0	0.02665	1	8010	8010		51.528	3.6122	1	204300			9610	8657	7861	7871	10516	10516					0.008710630869245506
ESKQRRNLP	9	Unmodified	_ESKQRRNLP_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.836181640625	2	564.317628	1126.6207	1.0058	0.00056756	-0.062696	-3.538E-05	0.94306	0.00053218	564.3176491858266	141.3	0.25421	141.3	141.08	141.34	0					6	4	2	0	0	0	0.027462	1	16496	16496		26.693	10.22	1	12004			9611	1536	7862	7872	10517	10517					0.06245853343375529
ESKQTVLIV	9	Unmodified	_ESKQTVLIV_					0	0	0		ENSG00000170961|ENST00000303924|HAS2	ENSG00000170961|ENST00000303924|HAS2	ENSG00000170961|ENST00000303924|HAS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.8040771484375	2	508.802957	1015.59136	-0.95572	-0.00048627	-1.8442	-0.00093835	-2.8	-0.0014246	508.8023086392608	51.329	1.0177	48.156	47.256	48.274	-3.1734					43	19	4	0	0	0	0.22621	1	2997	2997		71.877	2.2498	1	375320			9612	7159	7863	7873	10518	10518					0.08418896274531562
ESKVITENDI	10	Unmodified	_ESKVITENDI_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	OvCa99_classI_Rep5	1	574.2979125976562	2	574.295693	1146.57683	-0.097336	-5.59E-05	4.4208	0.0025388	4.3235	0.0024829	574.2980521117673	57.201	0.85639	57.201	56.961	57.818	0					51	19	4	0	0	0	0.43433	1	4782	4782		63.534	0.22758	1	3529800			9613	15096	7864	7874	10519	10519					0.009407793357240735
ESLAFLLLVP	10	Unmodified	_ESLAFLLLVP_					0	0	0			REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|1|1|sense	REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|1|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.2875366210938	2	551.33135	1100.64815	-0.65111	-0.00035898	-4.0102	-0.002211	-4.6614	-0.0025699	551.3302081426173	42.549	0.81501	42.549	42.068	42.883	0					40	18	4	0	0	0	0.026723	1	2756	2756		79.451	34.429	1	662340	+		9614	28255	7865	7875	10520	10520					0.10184943831040982
ESLATIKAQL	10	Unmodified	_ESLATIKAQL_					0	0	0			REV__nc|ENSG00000135365|Q96BD5-2|PHF21A	REV__nc|ENSG00000135365|Q96BD5-2|PHF21A	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.272216796875	2	537.313689	1072.61282	3.6234	0.0019469	-1.3569	-0.0007291	2.2665	0.0012178	537.3131262996116	88.455	0.2528	88.455	88.298	88.551	0					8	5	2	0	0	0	0.026826	1	9407	9407		36.447	7.2767	1	127990	+		9615	19279	7866	7876	10521	10521					0.07942281303257914
ESLFILSPK	9	Unmodified	_ESLFILSPK_					0	0	0			REV__nc|ENSG00000179873|P59045-3|NLRP11	REV__nc|ENSG00000179873|P59045-3|NLRP11	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.32373046875	2	517.30005	1032.58555	-0.44379	-0.00022957	-0.64111	-0.00033165	-1.0849	-0.00056122	517.2995124591372	105.25	0.24803	103.23	103.05	103.3	-2.0161					6	4	2	0	0	0	0.027462	1	9548	9548		26.693	0	1	11198	+		9616	22144	7867	7877	10522	10522					0.07055797762859584
ESLGGVESLL	10	Unmodified	_ESLGGVESLL_					0	0	0		tr|A0A7D6ZZA9|A0A7D6ZZA9_9CLOTPLP-dependenttransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05385PE=3SV=1	tr|A0A7D6ZZA9|A0A7D6ZZA9_9CLOTPLP-dependenttransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05385PE=3SV=1	tr|A0A7D6ZZA9|A0A7D6ZZA9_9CLOTPLP-dependenttransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05385PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	502.26953125	2	502.268947	1002.52334	2.649	0.0013305	-0.67419	-0.00033863	1.9748	0.00099188	502.2685058727369	90.29	0.91793	90.29	90.02	90.938	0					48	22	4	0	0	0	0.048252	1	9665	9665		129.68	14.189	1	9931700			9617	35953	7868	7878	10523	10523					0.02218026623870628
ESLICGFALH	10	Unmodified	_ESLICGFALH_					0	0	0			REV__ENSG00000103023|ENST00000567164|PRSS54	REV__ENSG00000103023|ENST00000567164|PRSS54	MULTI-SECPEP	OvCa9_classI_Rep2	2	545.7977294921875	2	545.273509	1088.53247	1.4868	0.0008107	-3.0292	-0.0016517	-1.5424	-0.00084103	545.2709687935517	88.225	0.6849	86.858	86.302	86.987	-1.3676					20	13	2	0	0	0	0.026708	1	7657	7657		33.516	8.0654	1	22473	+		9618	17589	7869	7879	10524	10524					-0.008259032914565978
ESLIGFLLAST	11	Unmodified	_ESLIGFLLAST_					0	0	0		tr|A0A553SUH3|A0A553SUH3_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06980PE=4SV=1	tr|A0A553SUH3|A0A553SUH3_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06980PE=4SV=1	tr|A0A553SUH3|A0A553SUH3_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06980PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	574.8375244140625	2	575.821347	1149.62814	-1.271	-0.00073188	3.3779	0.001945	2.1068	0.0012132	575.8231879101102	92.4	1.1616	89.858	89.517	90.678	-2.5425					37	22	2	0	0	0	0.025315	1	7996	7996		45.972	5.1941	1	45961			9619	34610	7870	7880	10525	10525					0.05931148100421524
ESLIGFLLAST	11	Unmodified	_ESLIGFLLAST_					0	0	0		tr|A0A553SUH3|A0A553SUH3_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06980PE=4SV=1	tr|A0A553SUH3|A0A553SUH3_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06980PE=4SV=1	tr|A0A553SUH3|A0A553SUH3_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06980PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	575.821347	1149.62814	0.82012	0.00047224	3.2003	0.0018428	4.0204	0.0023151	575.8229987943788	90.65	0.65143	89.348	89.077	89.728	-1.302	-0.29355	-0.00053615	NaN	45.972	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32825			9620	34610	7870	7880							0.05931148100421524
ESLKENAIK	9	Unmodified	_ESLKENAIK_					0	0	0			REV__CNTLN|p.K1206Sfs*15|1|0.3|ENSG00000044459|chr9:17466063-17466063|A/-|frameshift_variant	REV__CNTLN|p.K1206Sfs*15|1|0.3|ENSG00000044459|chr9:17466063-17466063|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	516.2918701171875	2	516.290214	1030.56587	-0.49632	-0.00025625	-0.02994	-1.5458E-05	-0.52626	-0.0002717	516.2901910143041	52.365	1.0481	52.365	52.083	53.131	0					51	23	3	0	0	0	0.066102	2	4114	4114;4128		109.48	5.4647	1	9930700	+		9621	16156	7871	7881	10526;10527	10526					0.05181421752058668
ESLKNGRLL	9	Unmodified	_ESLKNGRLL_					0	0	0			REV__ENST00000560340.5_1_15:86126152-86126230:+|nuORF	REV__ENST00000560340.5_1_15:86126152-86126230:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.3114624023438	2	515.306198	1028.59784	-1.1087	-0.00057132	-0.38135	-0.00019651	-1.4901	-0.00076784	515.3060796995346	53.889	0.46031	50.642	50.364	50.825	-3.2474					14	8	3	0	0	0	0.3076	1	3323	3323		62.107	1.9892	1	86297	+		9622	27617	7872	7882	10528	10528					0.08468834225891442
ESLLERGEK	9	Unmodified	_ESLLERGEK_					0	0	0		ENST00000421621.2_1_7:44250594-44251878:+|nuORF;ENST00000424864.1_3_7:44250473-44251164:+|nuORF;ENST00000447123.5_1_7:44240734-44251164:+|nuORF;ENSG00000106636|ENST00000223369|YKT6	ENST00000421621.2_1_7:44250594-44251878:+|nuORF	ENST00000421621.2_1_7:44250594-44251878:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.757568359375	2	530.785296	1059.55604	-1.7383	-0.00092268	3.8832	0.0020611	2.1449	0.0011385	530.7872498490293	65.793	0.72639	62.307	62.034	62.761	-3.4854					29	14	3	0	0	0	0.027403	1	4726	4726		60.118	16.001	1	106690			9623	2567	7873	7883	10529	10529					0.028642337467317702
ESLLFSVNC	9	Unmodified	_ESLLFSVNC_					0	0	0			REV__nc|ENSG00000156515|P19367-4|HK1	REV__nc|ENSG00000156515|P19367-4|HK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.3323974609375	2	506.244418	1010.47428	-0.31805	-0.00016101	1.2355	0.00062547	0.91746	0.00046446	506.24517300637075	57.58	0.20432	54.235	54.138	54.342	-3.3449					5	3	2	0	0	0	0.027462	1	3737	3737		29.15	10.825	1	6689.6	+		9624	20485	7874	7884	10530	10530					-0.030535849367424817
ESLLLGVPK	9	Unmodified	_ESLLLGVPK_					0	0	0			REV__nc|ENSG00000107949|Q9P287-4|BCCIP	REV__nc|ENSG00000107949|Q9P287-4|BCCIP	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.3058776855469	2	478.294768	954.574983	-0.33951	-0.00016239	-2.3965	-0.0011462	-2.736	-0.0013086	478.2938243198045	48.422	0.1685	48.422	48.332	48.501	0					5	3	2	0	0	0	0.027455	1	3544	3544		51.335	29.376	1	74480	+		9625	17867	7875	7885	10531	10531					0.09587815108420727
ESLLLQIVRL	10	Unmodified	_ESLLLQIVRL_					0	0	0			REV__nc|ENSG00000145113|Q99102-17|MUC4	REV__nc|ENSG00000145113|Q99102-17|MUC4	MULTI-MSMS	OvCa99_classI_Rep5	1	592.3736572265625	2	592.374081	1182.73361	0.72908	0.00043189	-2.6716	-0.0015826	-1.9425	-0.0011507	592.37235559255	159.94	1.2378	159.94	159.57	160.81	0					71	24	5	0	0	0	0.79213	1	18756	18756		19.997	2.5288	1	1417800	+		9626	19951	7876	7886	10532	10532					0.14955109016705137
ESLNSMNKNI	10	Unmodified	_ESLNSMNKNI_					0	0	0		tr|A0A7D6ZMW1|A0A7D6ZMW1_9CLOTCachedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13700PE=3SV=1	tr|A0A7D6ZMW1|A0A7D6ZMW1_9CLOTCachedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13700PE=3SV=1	tr|A0A7D6ZMW1|A0A7D6ZMW1_9CLOTCachedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13700PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	574.8388671875	2	575.282063	1148.54957	-1.1015	-0.00063368	-0.69895	-0.00040209	-1.8005	-0.0010358	575.7833498758738	92.01	1.5667	89.468	89.012	90.578	-2.5425					54	30	3	0	0	0	0.026624	1	7958	7958		46.457	0	1	48382			9627	35668	7877	7887	10533	10533					-0.01876027476305353
ESLPNSVFLV	10	Unmodified	_ESLPNSVFLV_					0	0	0		nc|ENSG00000163075|Q4G0U5-4|CFAP221	nc|ENSG00000163075|Q4G0U5-4|CFAP221	nc|ENSG00000163075|Q4G0U5-4|CFAP221	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.2593994140625	2	552.800414	1103.58628	-0.25693	-0.00014203	0.72061	0.00039835	0.46368	0.00025632	553.3010936845285	68.571	0.24834	65.95	65.819	66.068	-2.6203					6	4	2	0	0	0	0.027021	1	5393	5393		15.642	0	1	5856.9			9628	15137	7878	7888	10534	10534					0.03862592411906007
ESLPVRTL	8	Unmodified	_ESLPVRTL_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-SECPEP	OvCa9_classI_Rep2	2	458.2391357421875	2	457.768917	913.523281	-0.37722	-0.00017268	0.30848	0.00014121	-0.068743	-3.1469E-05	457.7689852157724	52.547	0.68947	49.734	49.493	50.183	-2.8129					17	13	2	0	0	0	0.028476	1	3556	3556		26.796	1.3459	1	20092			9629	1532	7879	7889	10535	10535					0.06306071414530834
ESLQLFIML	9	Unmodified	_ESLQLFIML_					0	0	0			REV__ENST00000301919.8_1_11:105878863-105879127:-|nuORF	REV__ENST00000301919.8_1_11:105878863-105879127:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.3350219726562	2	547.301736	1092.58892	-0.52868	-0.00028935	2.6982	0.0014767	2.1695	0.0011874	547.3028284240257	54.401	0.37548	54.401	54.172	54.547	0					12	8	2	0	0	0	0.027462	1	4356	4356		27.882	0	1	338580	+		9630	24253	7880	7890	10536	10536					0.04632724545194833
ESLQREIQ	8	Unmodified	_ESLQREIQ_					0	0	0		ENST00000571657.5_1_17:19281216-19286541:+|nuORF;ENST00000570306.5_1_17:19284999-19286541:+|nuORF;nc|ENSG00000166484|Q13164-2|MAPK7;ENSG00000166484|ENST00000395604|MAPK7	ENST00000571657.5_1_17:19281216-19286541:+|nuORF	ENST00000571657.5_1_17:19281216-19286541:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.2774353027344	2	501.764363	1001.51417	1.2026	0.00060342	-4.4711	-0.0022434	-3.2685	-0.00164	501.76323458220935	123.38	0.32998	123.38	123.18	123.51	0					9	6	2	0	0	0	0.028476	1	14200	14200		40.778	0	1	40861			9631	6687	7881	7891	10537	10537					0.013476780581868297
ESLRDRISI	9	Unmodified	_ESLRDRISI_					0	0	0		tr|A0A7D6VU81|A0A7D6VU81_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00965PE=4SV=1	tr|A0A7D6VU81|A0A7D6VU81_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00965PE=4SV=1	tr|A0A7D6VU81|A0A7D6VU81_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00965PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	544.8089599609375	2	544.806562	1087.59857	-0.37112	-0.00020219	2.6293	0.0014324	2.2581	0.0012303	544.8076793315723	78.589	2.5947	76.237	75.253	77.848	-2.3527					128	51	4	0	0	0	0.35694	1	4212	4212		56.434	1.6575	1	2782000			9632	35172	7882	7892	10538	10538					0.05827628874953916
ESLRIQQRQ	9	Unmodified	_ESLRIQQRQ_					0	0	0		ENSG00000126016|ENST00000371959|AMOT;nc|ENSG00000126016|Q4VCS5-2|AMOT	ENSG00000126016|ENST00000371959|AMOT	ENSG00000126016|ENST00000371959|AMOT	MULTI-MSMS	OvCa9_classI_Rep2	2	579.322509765625	2	579.322911	1156.63127	2.6185	0.0015169	-2.7111	-0.0015706	-0.092569	-5.3628E-05	579.3212562959395	26.202	0.67894	23.493	23.343	24.022	-2.7097					37	15	3	0	0	0	0.44568	1	337	337		47.657	12.505	1	118080			9633	3763	7883	7893	10539	10539					0.05921835997787639
ESLRVETLI	9	Unmodified	_ESLRVETLI_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	OvCa99_classI_Rep5	1	530.3070068359375	2	530.305864	1058.59717	-0.4564	-0.00024203	-1.273	-0.00067509	-1.7294	-0.00091712	530.3055007424592	53.796	3.9614	53.796	53.347	57.309	0					264	94	7	0	0	0	0.068524	1	4452	4452		108.09	11.897	1	260990000	+		9634	29089	7884	7894	10540	10540					0.07021994786191499
ESLTCNTEP	9	Unmodified	_ESLTCNTEP_					0	0	0		ENST00000587974.1_1_18:43487913-43547205:-|nuORF;EPG5-RAB38|2|fusion;EPG5-RAB38|1|fusion;nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5	ENST00000587974.1_1_18:43487913-43547205:-|nuORF	ENST00000587974.1_1_18:43487913-43547205:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.8125915527344	2	497.213314	992.412076	2.0812	0.0010348	-2.22	-0.0011038	-0.13879	-6.9007E-05	497.211965507342	116.4	0.41026	116.4	116.19	116.6	0					19	8	3	0	0	0	0.027447	1	13319	13319		47.657	3.5405	1	353350			9635	5613	7885	7895	10541	10541					-0.08443356075747488
ESLVPLLSL	9	Unmodified	_ESLVPLLSL_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54;nc|ENSG00000188596|Q96N23-2|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.8141174316406	2	485.794601	969.574648	1.539	0.00074766	0.52184	0.00025351	2.0609	0.0010012	485.79453634526516	148.57	0.39455	148.57	148.32	148.72	0					10	7	2	0	0	0	0.027418	1	17379	17379		58.782	0	1	29736			9636	8482	7886	7896	10542	10542					0.08864395388582125
ESLVTVGLTNL	11	Unmodified	_ESLVTVGLTNL_					0	0	0			REV__ENSG00000100104|ENST00000215917|SRRD	REV__ENSG00000100104|ENST00000215917|SRRD	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.876953125	2	573.324254	1144.63395	-1.4818	-0.00084954	3.8024	0.00218	2.3206	0.0013305	573.3263841010902	103.64	1.0196	103.64	103.34	104.36	0					43	23	3	0	0	0	0.025528	1	11657	11657		35.152	0	1	721190	+		9637	17366	7887	7897	10543	10543					0.06742246612111558
ESLYFSNNKL	10	Unmodified	_ESLYFSNNKL_					0	0	0		ENSG00000171492|ENST00000337338|LRRC8D	ENSG00000171492|ENST00000337338|LRRC8D	ENSG00000171492|ENST00000337338|LRRC8D	MULTI-SECPEP	OvCa99_classI_Rep5	1	607.7904052734375	2	607.806228	1213.5979	0.87681	0.00053293	-1.5153	-0.00092099	-0.63847	-0.00038807	607.8054808780713	103.32	0.41434	103.32	103.14	103.55	0					17	9	3	0	0	0	0.026464	1	11570	11570		51.193	0	1	207940			9638	7204	7888	7898	10544	10544					-0.0003521056476074591
ESLYLWRL	8	Unmodified	_ESLYLWRL_					0	0	0			REV__ENSG00000136457|ENST00000508540|CHAD	REV__ENSG00000136457|ENST00000508540|CHAD	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.807373046875	2	540.297842	1078.58113	2.1601	0.0011671	-0.50324	-0.0002719	1.6569	0.0008952	540.2975129998605	95.746	0.75754	95.746	95.41	96.168	0					42	17	4	0	0	0	0.028476	1	10496	10496		73.975	16.163	1	3812400	+		9639	19386	7889	7899	10545	10545					0.04498333339938654
ESMGKWGPL	9	Unmodified	_ESMGKWGPL_					0	0	0			REV__ENST00000474969.5_1_2:86385703-86422514:-|nuORF	REV__ENST00000474969.5_1_2:86385703-86422514:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.7914733886719	2	502.747127	1003.4797	-0.84341	-0.00042402	-2.9983	-0.0015074	-3.8417	-0.0019314	502.74563422527797	50.266	0.47813	50.266	50.031	50.509	0					15	10	2	0	0	0	0.027392	1	3790	3790		73.975	16.163	1	371680	+		9640	26349	7890	7900	10546	10546					-0.02189861354270306
ESMLLPDLTKN	11	Unmodified	_ESMLLPDLTKN_					0	0	0			REV__nc|ENSG00000132530|Q6GPH4-6|XAF1	REV__nc|ENSG00000132530|Q6GPH4-6|XAF1	MULTI-SECPEP	OvCa9_classI_Rep2	2	630.3717041015625	2	630.828846	1259.64314	-1.2185	-0.00076868	1.1355	0.00071633	-0.082993	-5.2354E-05	631.3306270561931	86.107	1.0865	84.617	84.344	85.431	-1.4906					32	20	2	0	0	0	0.025568	1	7487	7487		30.318	0	1	34410	+		9641	28852	7891	7901	10547	10547					0.023702719061020616
ESMPDVLKI	9	Oxidation (M)	_ESM(Oxidation (M))PDVLKI_		ESM(1)PDVLKI		ESM(100)PDVLKI	0	0	1		nc|ENSG00000163946|Q9UK61-2|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR	nc|ENSG00000163946|Q9UK61-2|TASOR	nc|ENSG00000163946|Q9UK61-2|TASOR	MULTI-MSMS	OvCa9_classI_Rep3	3	524.271728515625	2	524.273175	1046.5318	0.85689	0.00044924	-4.4765	-0.0023469	-3.6196	-0.0018977	524.2706948277186	120.46	3.5918	119.43	118.68	122.27	-1.0271					167	69	5	0	0	0	0.083631	1	9196	9196		101.6	13.846	1	1392700			9642	6384	7892	7902	10548	10548		201			0.01039257268826077
ESNGRGVGIT	10	Unmodified	_ESNGRGVGIT_					0	0	0		tr|A0A553SKQ2|A0A553SKQ2_NIACIDUF308domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_19160PE=4SV=1	tr|A0A553SKQ2|A0A553SKQ2_NIACIDUF308domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_19160PE=4SV=1	tr|A0A553SKQ2|A0A553SKQ2_NIACIDUF308domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_19160PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.79449462890625	2	495.254163	988.493772	-0.72935	-0.00036121	2.1593	0.0010694	1.43	0.00070821	495.2561340414822	53.347	1.1353	53.347	52.873	54.008	0					41	26	3	0	0	0	0.026659	1	4189	4189		37.812	8.6415	1	553940			9643	33642	7893	7903	10549	10549					-0.0009349260162707651
ESNKVKEII	9	Unmodified	_ESNKVKEII_					0	0	0			REV__tr|A0A7D6VQD1|A0A7D6VQD1_9CLOTChaperoninGroELOS=ClostridiumintestinaleOX=36845GN=groLPE=3SV=1	REV__tr|A0A7D6VQD1|A0A7D6VQD1_9CLOTChaperoninGroELOS=ClostridiumintestinaleOX=36845GN=groLPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	530.3076782226562	2	530.305864	1058.59717	-0.4564	-0.00024203	-1.273	-0.00067509	-1.7294	-0.00091712	530.3055007424592	53.796	3.9614	53.796	53.347	57.309	0					264	94	7	0	0	0	0.21231	1	4520	4520		74.255	1.3758	1	260990000	+		9644	31315	7894	7904	10550	10550					0.07021994786191499
ESNKVKEII	9	Unmodified	_ESNKVKEII_					0	0	0			REV__tr|A0A7D6VQD1|A0A7D6VQD1_9CLOTChaperoninGroELOS=ClostridiumintestinaleOX=36845GN=groLPE=3SV=1	REV__tr|A0A7D6VQD1|A0A7D6VQD1_9CLOTChaperoninGroELOS=ClostridiumintestinaleOX=36845GN=groLPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.3072509765625	2	530.305864	1058.59717	-0.64097	-0.00033991	-0.15325	-8.1267E-05	-0.79422	-0.00042118	530.3057582381667	59.593	1.3281	56.201	55.805	57.133	-3.392					69	26	4	0	0	0	0.10363	1	3997	3997		96.19	0	1	2080400	+		9645	31315	7894	7904	10551	10551					0.07021994786191499
ESNPTNVKN	9	Unmodified	_ESNPTNVKN_					0	0	0		ENST00000335117.8_1_19:20308384-20308627:+|nuORF;ENST00000502675.1_19:20577295-20577979:-|nuORF	ENST00000335117.8_1_19:20308384-20308627:+|nuORF	ENST00000335117.8_1_19:20308384-20308627:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.2790832519531	2	501.74617	1001.47779	1.1614	0.00058271	-3.9728	-0.0019933	-2.8114	-0.0014106	502.2445648984445	89.07	1.2855	87.703	87.329	88.615	-1.3676					38	25	2	0	0	0	0.027426	1	7878	7878		56.721	0	1	22325			9646	10492	7895	7905	10552	10552					-0.022891988385140394
ESPESYTLIL	10	Unmodified	_ESPESYTLIL_					0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-MSMS	OvCa99_classI_Rep5	1	576.297119140625	2	576.295162	1150.57577	1.5133	0.00087212	1.7804	0.0010261	3.2938	0.0018982	576.2958731771798	118.56	0.66074	118.56	118.3	118.96	0					26	13	3	0	0	0	0.59703	1	13615	13615		42.396	1.618	1	136270	+		9647	22589	7896	7906	10553	10553					0.006505649668270053
ESPKRWVT	8	Unmodified	_ESPKRWVT_					0	0	0			REV__ENST00000508215.1_1_5:110842026-110848199:-|nuORF	REV__ENST00000508215.1_1_5:110842026-110848199:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.82623291015625	2	501.771991	1001.52943	-0.86347	-0.00043326	-0.99503	-0.00049928	-1.8585	-0.00093254	501.77180559429354	66.115	0.30408	66.115	65.984	66.288	0					11	7	2	0	0	0	0.028476	1	6106	6106		30.318	3.6248	1	181570	+		9648	20960	7897	7907	10554	10554					0.028725896460514377
ESPLFVLVD	9	Unmodified	_ESPLFVLVD_					0	0	0			REV__ENST00000495597.1_1_2:74751010-74751370:-|nuORF	REV__ENST00000495597.1_1_2:74751010-74751370:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7861022949219	2	509.776408	1017.53826	-0.37766	-0.00019252	1.0013	0.00051044	0.62364	0.00031792	509.77474805014305	68.42	1.3617	68.42	68.152	69.513	0					68	32	4	0	0	0	0.027455	1	6434	6434		42.396	20.436	1	16180000	+		9649	19890	7898	7908	10555	10555					0.030195184918511586
ESPLWRLV	8	Unmodified	_ESPLWRLV_					0	0	0			REV__ENST00000348993.9_1_15:85175042-85175093:+|nuORF	REV__ENST00000348993.9_1_15:85175042-85175093:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.2790832519531	2	500.284734	998.554916	1.3292	0.00066496	0.20869	0.0001044	1.5378	0.00076936	500.2844143120714	89.121	1.1865	87.753	87.329	88.516	-1.3676					46	23	4	0	0	0	0.028476	1	7878	7878		42.474	0	1	39140	+		9650	24711	7899	7909	10556	10556					0.05558064168474175
ESPRLSLLT	9	Unmodified	_ESPRLSLLT_					0	0	0			REV__ENSG00000163273|ENST00000409852|NPPC	REV__ENSG00000163273|ENST00000409852|NPPC	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7319030761719	2	508.292756	1014.57096	0.26019	0.00013225	1.0248	0.00052088	1.285	0.00065313	508.2930851218361	62.995	0.63802	62.995	62.581	63.219	0					20	15	2	0	0	0	0.027462	1	5596	5596		32.812	7.2384	1	706610	+		9651	20822	7900	7910	10557	10557					0.06425725614712974
ESPWKPPTYL	10	Unmodified	_ESPWKPPTYL_					0	0	0		ENSG00000170852|ENST00000304056|KBTBD2	ENSG00000170852|ENST00000304056|KBTBD2	ENSG00000170852|ENST00000304056|KBTBD2	MULTI-SECPEP	OvCa9_classI_Rep2	2	406.2440490722656	3	406.544885	1216.61282	1.6843	0.00068474	-4.0705	-0.0016549	-2.3862	-0.00097011	406.5430660290985	81.822	0.72831	80.173	79.919	80.648	-1.6485					25	13	3	0	0	0	0.026867	1	6990	6990		35.152	13.466	1	26498			9652	7144	7901	7911	10558	10558					0.01318281303247204
ESPWKPPTYL	10	Unmodified	_ESPWKPPTYL_					0	0	0		ENSG00000170852|ENST00000304056|KBTBD2	ENSG00000170852|ENST00000304056|KBTBD2	ENSG00000170852|ENST00000304056|KBTBD2	MULTI-MATCH	OvCa9_classI_Rep3	3		3	406.544885	1216.61282	-0.01634	-6.6429E-06	-2.6472	-0.0010762	-2.6635	-0.0010828	406.5435793642038	82.702	1.0419	80.406	80.039	81.081	-2.2963	0.12568	0.001013	NaN	35.152	30	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45468			9653	7144	7901	7911							0.01318281303247204
ESPYPYFVP	9	Unmodified	_ESPYPYFVP_					0	0	0		ENST00000527808.1_1_11:102219126-102219376:+|nuORF;ENST00000534646.5_1_11:102217957-102219379:+|nuORF	ENST00000527808.1_1_11:102219126-102219376:+|nuORF	ENST00000527808.1_1_11:102219126-102219376:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.7544555664062	2	549.760758	1097.50696	0.31387	0.00017256	2.4267	0.0013341	2.7405	0.0015066	549.7620169526365	161.27	2.1703	161.27	160.35	162.53	0					70	42	2	0	0	0	0.027433	1	19012	19012		47.916	28.812	1	31351			9654	13244	7902	7912	10559	10559					-0.0378905454224423
ESQGPQRLL	9	Unmodified	_ESQGPQRLL_					0	0	0			REV__ENST00000445563.2_1_1:28013637-28013913:-|nuORF	REV__ENST00000445563.2_1_1:28013637-28013913:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.820068359375	2	514.28018	1026.54581	2.2762	0.0011706	-3.1519	-0.001621	-0.87572	-0.00045037	514.2784695309726	80.549	0.4734	80.549	80.354	80.827	0					16	10	2	0	0	0	0.027402	1	8272	8272		66.429	27.623	1	634520	+		9655	25889	7903	7913	10560	10560					0.033596708121422125
ESQGPQRLL	9	Unmodified	_ESQGPQRLL_					0	0	0			REV__ENST00000445563.2_1_1:28013637-28013913:-|nuORF	REV__ENST00000445563.2_1_1:28013637-28013913:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	514.28018	1026.54581	-0.40499	-0.00020828	-0.036722	-1.8885E-05	-0.44171	-0.00022717	514.2811224142749	83.247	0.14597	80.584	80.486	80.632	-2.6629	0.017508	0.0030603	NaN	66.429	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4819.6	+		9656	25889	7903	7913							0.033596708121422125
ESQMKRWL	8	Unmodified	_ESQMKRWL_					0	0	0			REV__ENST00000540013.5_1_11:94224036-94224084:-|nuORF	REV__ENST00000540013.5_1_11:94224036-94224084:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.7664184570312	2	539.279126	1076.5437	0.078258	4.2203E-05	2.7696	0.0014936	2.8479	0.0015358	539.2806298496937	31.931	0.39752	31.931	31.658	32.055	0					14	7	3	0	0	0	0.028476	1	1320	1320		30.504	0	1	112720	+		9657	27344	7904	7914	10561	10561					0.008489188026715055
ESQNEKVPK	9	Unmodified	_ESQNEKVPK_					0	0	0			REV__ENSG00000132612|ENST00000254950|VPS4A	REV__ENSG00000132612|ENST00000254950|VPS4A	MULTI-SECPEP	OvCa9_classI_Rep2	2	530.3062133789062	2	529.77747	1057.54039	-0.99188	-0.00052548	1.0254	0.00054321	0.033471	1.7732E-05	529.777688528355	58.995	0.66967	56.215	55.888	56.557	-2.7801					16	12	2	0	0	0	0.027433	1	4273	4273		64.207	12.872	1	26518	+		9658	19091	7905	7915	10562	10562					0.01391947229649304
ESQPINHPYA	10	Unmodified	_ESQPINHPYA_					0	0	0			REV__ENSG00000172954|ENST00000379509|LCLAT1	REV__ENSG00000172954|ENST00000379509|LCLAT1	MULTI-MSMS	OvCa99_classI_Rep5	1	578.778564453125	2	578.275095	1154.53564	1.4704	0.0008503	2.1621	0.0012503	3.6325	0.0021006	578.2760998983272	134.66	0.93428	134.66	134.47	135.41	0					52	20	3	0	0	0	0.64697	1	15709	15709		36.447	4.9169	1	447360	+		9659	21739	7906	7916	10563	10563					-0.03544936913090169
ESQPRLTSH	9	Unmodified	_ESQPRLTSH_					0	0	0		ENST00000367511.3_1_1:184761553-184761835:-|nuORF	ENST00000367511.3_1_1:184761553-184761835:-|nuORF	ENST00000367511.3_1_1:184761553-184761835:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	527.7646484375	2	527.767437	1053.52032	-1.6801	-0.00088668	-4.0012	-0.0021117	-5.6813	-0.0029984	527.7651738964477	92.358	2.7939	90.334	89.992	92.786	-2.0241					91	56	3	0	0	0	0.18193	1	5852	5852		79.451	5.4763	1	803800			9660	10846	7907	7917	10564	10564					-0.004298037102898888
ESQVMFLP	8	Unmodified	_ESQVMFLP_					0	0	0		ENST00000543205.1_1_12:122762601-122763649:-|nuORF	ENST00000543205.1_1_12:122762601-122763649:-|nuORF	ENST00000543205.1_1_12:122762601-122763649:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	474.7549743652344	2	475.736228	949.457904	0.66355	0.00031568	3.826	0.0018202	4.4895	0.0021358	475.7380505683152	56.657	0.66098	53.362	53.171	53.832	-3.2944					18	12	2	0	0	0	0.028476	1	3656	3656		42.474	20.515	1	31037			9661	13491	7908	7918	10565	10565					-0.01884666102830579
ESRAQEEN	8	Unmodified	_ESRAQEEN_					0	0	0		ENSG00000171302|ENST00000392446|CANT1;nc|ENSG00000171302|Q8WVQ1-3|CANT1;nc|ENSG00000171302|Q8WVQ1-2|CANT1	ENSG00000171302|ENST00000392446|CANT1	ENSG00000171302|ENST00000392446|CANT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.7715759277344	2	481.712328	961.410102	-1.0758	-0.00051823	1.6309	0.00078565	0.55514	0.00026742	481.71299416143177	34.563	0.84613	34.563	34.351	35.198	0					38	17	4	0	0	0	0.028476	1	1717	1717		53.351	12.779	1	982030			9662	7190	7909	7919	10566	10566					-0.07214648769331689
ESRARFPS	8	Unmodified	_ESRARFPS_					0	0	0			REV__ENSG00000033011|ENST00000262374|ALG1	REV__ENSG00000033011|ENST00000262374|ALG1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	474.7549743652344	2	475.246141	948.477728	0.52118	0.00024769	-1.6829	-0.00079978	-1.1617	-0.00055209	475.2451683770272	56.39	0.6569	53.095	52.87	53.527	-3.2944					18	12	2	0	0	0	0.028476	1	3656	3656		34.173	7.4796	1	81058	+		9663	16591	7910	7920	10567	10567					0.0014284595214348883
ESRAVHLVL	9	Unmodified	_ESRAVHLVL_					0	0	0			REV__ENSG00000159339|ENST00000375448|PADI4	REV__ENSG00000159339|ENST00000375448|PADI4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.7935180664062	2	512.300916	1022.58728	0.16758	8.585E-05	-0.36849	-0.00018878	-0.20091	-0.00010293	512.3005297132528	59.733	0.98368	56.341	56.1	57.084	-3.392					51	19	4	0	0	0	0.027455	1	4085	4085		42.396	9.5837	1	303740	+		9664	20610	7911	7921	10568	10568					0.07688851571458599
ESRAVHLVL	9	Unmodified	_ESRAVHLVL_					0	0	0			REV__ENSG00000159339|ENST00000375448|PADI4	REV__ENSG00000159339|ENST00000375448|PADI4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	512.300916	1022.58728	-0.29797	-0.00015265	-0.016037	-8.2156E-06	-0.31401	-0.00016087	512.3004099423489	59.227	0.93674	56.447	56.036	56.973	-2.7801	0.052897	0.00030215	NaN	51.335	20	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47122	+		9665	20610	7911	7921							0.07688851571458599
ESRDAKGEL	9	Unmodified	_ESRDAKGEL_					0	0	0			REV__PCNT|p.A2734Qfs*36|1|0.3|ENSG00000160299|chr21:46431663-46431664|-/CAGAA|frameshift_variant	REV__PCNT|p.A2734Qfs*36|1|0.3|ENSG00000160299|chr21:46431663-46431664|-/CAGAA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.2418518066406	2	502.753995	1003.49344	-0.47621	-0.00023942	-0.55795	-0.00028051	-1.0342	-0.00051993	503.2539619866254	55.612	0.53117	55.612	55.48	56.011	0					13	12	2	0	0	0	0.027304	1	4609	4609		87.696	25.589	1	274980	+		9666	20654	7912	7922	10569	10569					-0.00816912321477048
ESREEKLGDSL	11	Unmodified	_ESREEKLGDSL_					0	0	0		nc|ENSG00000149970|Q8WXI2-5|CNKSR2;ENSG00000149970|ENST00000379510|CNKSR2	nc|ENSG00000149970|Q8WXI2-5|CNKSR2	nc|ENSG00000149970|Q8WXI2-5|CNKSR2	MULTI-SECPEP	OvCa9_classI_Rep3	3	631.831298828125	2	631.814781	1261.61501	-0.40938	-0.00025865	-4.1985	-0.0026527	-4.6079	-0.0029113	631.812590041118	96.682	0.15595	94.853	94.775	94.931	-1.8286					4	2	2	0	0	0	0.025406	1	6360	6360		54.722	3.5297	1	11043			9667	5496	7913	7923	10570	10570					-0.005333347495934504
ESRHLVKVP	9	Unmodified	_ESRHLVKVP_					0	0	0		ENST00000405021.7_1_7:22861870-22861924:-|nuORF	ENST00000405021.7_1_7:22861870-22861924:-|nuORF	ENST00000405021.7_1_7:22861870-22861924:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	533.3472290039062	2	532.81419	1063.61383	-0.48117	-0.00025638	1.4482	0.0007716	0.96699	0.00051523	532.8146551008138	92.351	0.78784	91.183	90.919	91.706	-1.168					28	14	3	0	0	0	0.027462	1	8230	8230		45.952	13.997	1	28171			9668	11458	7914	7924	10571	10571					0.08456540462793782
ESRKKKDKA	9	Unmodified	_ESRKKKDKA_					0	0	0			REV__tr|A0A553STF0|A0A553STF0_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_04925PE=4SV=1	REV__tr|A0A553STF0|A0A553STF0_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_04925PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.31591796875	2	545.32238	1088.63021	-1.2464	-0.00067968	3.5582	0.0019404	2.3118	0.0012607	545.3242996724007	73.603	0.9997	70.207	69.93	70.93	-3.3961					59	20	4	0	0	0	0.02744	1	5775	5775		71.877	25.926	1	241440	+		9669	30954	7915	7925	10572	10572					0.08943621628895926
ESRPKKLIL	9	Unmodified	_ESRPKKLIL_					0	0	0			REV__ENST00000572438.1_1_17:4802033-4804946:-|nuORF	REV__ENST00000572438.1_1_17:4802033-4804946:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.2946166992188	2	542.347866	1082.68118	1.5439	0.00083731	0.4482	0.00024308	1.9921	0.0010804	542.3479415725344	119.89	0.65953	119.89	119.52	120.18	0					32	15	3	0	0	0	0.027455	1	13775	13775		42.396	15.703	1	121290	+		9670	17895	7916	7926	10573	10573					0.14314570673764138
ESRPKKLIL	9	Unmodified	_ESRPKKLIL_					0	0	0			REV__ENST00000572438.1_1_17:4802033-4804946:-|nuORF	REV__ENST00000572438.1_1_17:4802033-4804946:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.66357421875	2	542.347866	1082.68118	-0.36476	-0.00019783	0.75999	0.00041218	0.39523	0.00021435	542.348891825939	94.438	1.8648	92.542	91.898	93.763	-1.8956					81	36	3	0	0	0	0.027462	1	6026	6026		44.117	12.162	1	68635	+		9671	17895	7916	7926	10574	10574					0.14314570673764138
ESRPKKLIL	9	Unmodified	_ESRPKKLIL_					0	0	0			REV__ENST00000572438.1_1_17:4802033-4804946:-|nuORF	REV__ENST00000572438.1_1_17:4802033-4804946:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	542.347866	1082.68118	-1.6936	-0.00091852	1.6249	0.00088126	-0.068697	-3.7258E-05	542.3486519290267	95.29	1.2565	92.821	92.46	93.717	-2.4685	0.13948	0.00013912	NaN	44.117	40	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66042	+		9672	17895	7916	7926							0.14314570673764138
ESRQIWVF	8	Unmodified	_ESRQIWVF_					0	0	0			REV__ENST00000377461.8_1_19:48718626-48735356:-|nuORF	REV__ENST00000377461.8_1_19:48718626-48735356:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.7845458984375	2	532.779816	1063.54508	-1.4585	-0.00077705	4.173	0.0022233	2.7145	0.0014462	532.7819960656624	79.683	1.932	76.932	76.227	78.159	-2.7514					78	39	3	0	0	0	0.66057	1	6512	6512		51.335	0.14276	1	1076100	+		9673	25123	7917	7927	10575	10575					0.01584876163087756
ESRREVPM	8	Unmodified	_ESRREVPM_					0	0	0		FAM120B|p.R410Sfs*77|1|0.03|ENSG00000112584|chr6:170318619-170318619|G/-|frameshift_variant;nc|ENSG00000112584|Q96EK7-2|FAM120B;ENSG00000112584|ENST00000476287|FAM120B	FAM120B|p.R410Sfs*77|1|0.03|ENSG00000112584|chr6:170318619-170318619|G/-|frameshift_variant	FAM120B|p.R410Sfs*77|1|0.03|ENSG00000112584|chr6:170318619-170318619|G/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.7806091308594	2	502.253108	1002.49166	0.18261	9.1716E-05	-4.4909	-0.0022556	-4.3083	-0.0021638	502.25076509902675	45.221	0.51791	45.221	45.023	45.54	0					26	11	4	0	0	0	0.028476	1	3098	3098		45.952	0	1	479280			9674	2912	7918	7928	10576	10576					-0.009482446110723686
ESRRSAMKG	9	Unmodified	_ESRRSAMKG_					0	0	0			REV__ENST00000397783.5_1_16:239199-239979:-|nuORF	REV__ENST00000397783.5_1_16:239199-239979:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.8017272949219	2	511.264007	1020.51346	-0.6369	-0.00032562	4.2009	0.0021478	3.564	0.0018221	511.767348469066	76.577	1.4127	74.723	73.991	75.403	-1.854					52	26	3	0	0	0	0.027462	1	6295	6295		34.173	22.662	1	27352	+		9675	16436	7919	7929	10577	10577					0.004025601375019505
ESRYQTDLF	9	Unmodified	_ESRYQTDLF_					0	0	0			REV__tr|A0A553SIV1|A0A553SIV1_NIACIFlagellarhook-associatedprotein1OS=NialliacirculansOX=1397GN=flgKPE=3SV=1	REV__tr|A0A553SIV1|A0A553SIV1_NIACIFlagellarhook-associatedprotein1OS=NialliacirculansOX=1397GN=flgKPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.799072265625	2	579.774928	1157.5353	1.241	0.00071953	4.0718	0.0023607	5.3128	0.0030802	579.7754652651882	138.28	0.38681	138.28	138.11	138.5	0					10	7	2	0	0	0	0.027462	1	16117	16117		23.042	0	1	26780	+		9676	29932	7920	7930	10578	10578					-0.037163566329581954
ESSALEKA	8	Unmodified	_ESSALEKA_					0	0	0			REV__tr|A0A553SKA5|A0A553SKA5_NIACIGlutamyl-tRNAreductaseOS=NialliacirculansOX=1397GN=hemAPE=3SV=1	REV__tr|A0A553SKA5|A0A553SKA5_NIACIGlutamyl-tRNAreductaseOS=NialliacirculansOX=1397GN=hemAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	418.5628662109375	2	417.713808	833.413062	0.12515	5.2278E-05	-0.31976	-0.00013357	-0.19461	-8.1292E-05	417.7136374652728	41.288	0.48779	41.288	41.149	41.637	0					16	10	2	0	0	0	0.028476	1	2574	2574		25.574	4.6271	1	63623	+		9677	30100	7921	7931	10579	10579					-0.010307736445156479
ESSFHGNQK	9	Unmodified	_ESSFHGNQK_					0	0	0		ENST00000261520.8_1_15:60715875-60720733:-|nuORF	ENST00000261520.8_1_15:60715875-60720733:-|nuORF	ENST00000261520.8_1_15:60715875-60720733:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.2420654296875	2	517.238513	1032.46247	-0.38989	-0.00020166	-1.0824	-0.00055987	-1.4723	-0.00076153	517.2382419031586	47.362	3.6491	44.289	43.552	47.201	-3.0724					185	70	5	0	0	0	0.27001	1	2591	2591		66.429	16.988	1	1023700			9678	9868	7922	7932	10580	10580					-0.0524606563569705
ESSFSAILL	9	Unmodified	_ESSFSAILL_					0	0	0			REV__ENST00000508798.5_1_4:99391677-99391764:-|nuORF	REV__ENST00000508798.5_1_4:99391677-99391764:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.8276672363281	2	483.760758	965.506963	-0.013913	-6.7306E-06	0.18629	9.0122E-05	0.17238	8.3392E-05	483.76089365332865	78.505	0.94514	75.688	75.312	76.257	-2.8165					35	19	2	0	0	0	0.027426	1	6281	6281		73.975	19.08	1	50875	+		9679	26918	7923	7933	10581	10581					0.022829454577845354
ESSFSAILL	9	Unmodified	_ESSFSAILL_					0	0	0			REV__ENST00000508798.5_1_4:99391677-99391764:-|nuORF	REV__ENST00000508798.5_1_4:99391677-99391764:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	483.760758	965.506963	2.5909	0.0012534	-0.058016	-2.8066E-05	2.5329	0.0012253	483.76072655493516	75.406	0.51411	75.406	75.087	75.601	0	-0.14092	-5.3278E-05	NaN	73.975	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1424200	+		9680	26918	7923	7933							0.022829454577845354
ESSFTVTPI	9	Unmodified	_ESSFTVTPI_					0	0	0			REV__ENSG00000162877|ENST00000367136|PM20D1	REV__ENSG00000162877|ENST00000367136|PM20D1	MULTI-MSMS	OvCa99_classI_Rep5	1	490.7537841796875	2	490.75039	979.486227	1.7592	0.00086332	4.3616	0.0021404	6.1208	0.0030038	490.7523790097712	134.19	0.60651	134.19	133.91	134.52	0					28	12	3	0	0	0	0.36502	1	15604	15604		55.504	2.1528	1	484570	+		9681	20786	7924	7934	10582	10582					-0.004336449218840244
ESSHSGLSGP	10	Unmodified	_ESSHSGLSGP_					0	0	0		OR51I2|p.W26G|1|0.21|ENSG00000187918|chr11:5453564-5453564|T/G|missense_variant	OR51I2|p.W26G|1|0.21|ENSG00000187918|chr11:5453564-5453564|T/G|missense_variant	OR51I2|p.W26G|1|0.21|ENSG00000187918|chr11:5453564-5453564|T/G|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	479.21697998046875	2	479.217246	956.419939	-0.40748	-0.00019527	0.43786	0.00020983	0.030374	1.4556E-05	479.21740163982145	35.224	0.42271	35.224	35.052	35.475	0					19	8	3	0	0	0	0.46756	1	1765	1765		58.782	0.97068	1	262290			9682	15460	7925	7935	10583	10583					-0.06001460763934574
ESSIFGFPL	9	Unmodified	_ESSIFGFPL_					0	0	0			REV__tr|A0A553SIM7|A0A553SIM7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15170PE=4SV=1	REV__tr|A0A553SIM7|A0A553SIM7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15170PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.333740234375	2	498.755475	995.496398	2.7435	0.0013684	1.9726	0.00098384	4.7161	0.0023522	498.7564324189326	134.9	0.69266	133.35	133.11	133.81	-1.5437					19	13	2	0	0	0	0.027462	1	13027	13027		25.45	0	1	18184	+		9683	29908	7926	7936	10584	10584					-0.001530371966509847
ESSIKLDRVI	10	Unmodified	_ESSIKLDRVI_					0	0	0		ENST00000450418.1_1_3:4024502-4025426:-|nuORF	ENST00000450418.1_1_3:4024502-4025426:-|nuORF	ENST00000450418.1_1_3:4024502-4025426:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	580.302978515625	2	580.337695	1158.66084	-1.294	-0.00075097	1.2144	0.00070475	-0.079638	-4.6217E-05	580.3384922983458	115.21	0.93771	114.15	113.95	114.88	-1.055					25	18	2	0	0	0	0.026942	1	8623	8623		40.058	0	1	43657			9684	12038	7927	7937	10585	10585					0.08785355223290026
ESSIKLMQKEK	11	Oxidation (M)	_ESSIKLM(Oxidation (M))QKEK_		ESSIKLM(1)QKEK		ESSIKLM(52)QKEK	0	0	1			REV__ENSG00000183206|ENST00000358970|POTEC;REV__ENSG00000222038|ENST00000409602|POTEJ	REV__ENSG00000183206|ENST00000358970|POTEC	MULTI-MSMS	OvCa9_classI_Rep2	2	446.24212646484375	3	446.242877	1335.7068	1.5961	0.00071226	-4.1509	-0.0018523	-2.5548	-0.00114	446.24100701459264	57.983	1.6668	55.191	54.773	56.44	-2.7921					91	32	5	0	0	0	0.51772	1	4177	4177		52.167	7.145	1	418310	+		9685	21182;22699	7928	7938	10586	10586		491			0.052376323432099525
ESSKIPTLL	9	Unmodified	_ESSKIPTLL_					0	0	0		CDKL3-PPP2CA|1|fusion;ENSG00000006837|ENST00000265334|CDKL3;ENST00000519312.5_1_5:133622211-133644013:-|nuORF;ENST00000520693.5_1_5:133622066-133644414:-|nuORF;ENST00000520515.5_1_5:133541561-133657575:-|nuORF	CDKL3-PPP2CA|1|fusion	CDKL3-PPP2CA|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	495.2864990234375	2	494.289682	986.564812	0.14785	7.3082E-05	-0.50562	-0.00024992	-0.35776	-0.00017684	494.28927855006106	106.14	1.6415	105.71	105.35	106.99	-0.43642					82	32	5	0	0	0	0.027426	1	9959	9959		39.253	0	1	202490			9686	214	7929	7939	10587	10587					0.07099207383191697
ESSKKRAR	8	Unmodified	_ESSKKRAR_					0	0	0		ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8	ENSG00000100888|ENST00000646647|CHD8	ENSG00000100888|ENST00000646647|CHD8	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.7746276855469	2	481.280515	960.546476	-0.3187	-0.00015338	4.3287	0.0020833	4.01	0.0019299	481.2820290304983	38.995	0.40147	38.995	38.75	39.151	0					10	8	2	0	0	0	0.028476	1	2250	2250		37.812	17.33	1	33706			9687	2115	7930	7940	10588	10588					0.06462510251856202
ESSLHQAET	9	Unmodified	_ESSLHQAET_					0	0	0			REV__ENSG00000188585|ENST00000623247|CLEC20A	REV__ENSG00000188585|ENST00000623247|CLEC20A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.7958984375	2	501.230353	1000.44615	-1.007	-0.00050476	0.66183	0.00033173	-0.34522	-0.00017303	501.2303759236124	109.19	0.92464	107.46	107.18	108.1	-1.7256					25	17	2	0	0	0	0.027462	1	10084	10084		39.253	17.55	1	50407	+		9688	22721	7931	7941	10589	10589					-0.054051915924674176
ESSLHQAET	9	Unmodified	_ESSLHQAET_					0	0	0			REV__ENSG00000188585|ENST00000623247|CLEC20A	REV__ENSG00000188585|ENST00000623247|CLEC20A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	501.230353	1000.44615	-0.28838	-0.00014454	-0.33246	-0.00016664	-0.62084	-0.00031118	501.23006964530515	108.54	0.65808	107.34	106.96	107.61	-1.1978	-0.060922	-0.00043452	NaN	31.53	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51503	+		9689	22721	7931	7941							-0.054051915924674176
ESSMHALLL	9	Unmodified	_ESSMHALLL_					0	0	0		ENSG00000005436|ENST00000321027|GCFC2;nc|ENSG00000005436|P16383-2|GCFC2;ENST00000486016.1_1_2:75917741-75921519:-|nuORF	ENSG00000005436|ENST00000321027|GCFC2	ENSG00000005436|ENST00000321027|GCFC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.8299560546875	2	500.760235	999.505917	-0.40916	-0.00020489	3.0348	0.0015197	2.6257	0.0013148	500.7616661149271	75.028	0.86884	71.797	71.483	72.351	-3.2308					28	17	2	0	0	0	0.027462	1	5911	5911		17.365	0	1	131140			9690	854	7932	7942	10590	10590					0.006144078172269474
ESSPKVRL	8	Unmodified	_ESSPKVRL_					0	0	0		CON__ENSEMBL:ENSBTAP00000031360	CON__ENSEMBL:ENSBTAP00000031360	CON__ENSEMBL:ENSBTAP00000031360	MULTI-SECPEP	OvCa9_classI_Rep4_	4	459.25604248046875	2	458.266542	914.51853	0.050902	2.3327E-05	-0.12246	-5.6119E-05	-0.071558	-3.2792E-05	458.26639243871733	57.101	1.171	53.756	53.425	54.596	-3.3449					39	22	2	0	0	0	0.028476	1	3718	3718		37.159	0	1	186110		+	9691	607	7934	7943	10591	10591					0.05785187271760606
ESSPKVRL	8	Unmodified	_ESSPKVRL_					0	0	0		CON__ENSEMBL:ENSBTAP00000031360	CON__ENSEMBL:ENSBTAP00000031360	CON__ENSEMBL:ENSBTAP00000031360	MULTI-MATCH	OvCa9_classI_Rep2	2		2	458.266542	914.51853	-0.064957	-2.9768E-05	-0.34606	-0.00015859	-0.41102	-0.00018835	458.26619425049046	56.748	1.0905	53.944	53.473	54.564	-2.804	0.094162	-0.00012082	NaN	37.159	37	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48400		+	9692	607	7934	7943							0.05785187271760606
ESSPSQEMPK	10	Unmodified	_ESSPSQEMPK_					0	0	0		nc|ENSG00000183977|A8MPX8-2|PP2D1;nc|ENSG00000183977|A8MPX8-3|PP2D1;ENSG00000183977|ENST00000389050|PP2D1	nc|ENSG00000183977|A8MPX8-2|PP2D1	nc|ENSG00000183977|A8MPX8-2|PP2D1	MULTI-SECPEP	OvCa9_classI_Rep2	2	560.7892456054688	2	560.252971	1118.49139	0.14632	8.1974E-05	2.795	0.0015659	2.9413	0.0016479	560.2555977881393	64.403	0.15926	61.678	61.545	61.705	-2.7245					4	2	2	0	0	0	0.026659	1	4905	4905		30.318	0	1	6781.5			9693	8126	7935	7944	10592	10592					-0.06311709121587228
ESSQLVLTL	9	Unmodified	_ESSQLVLTL_					0	0	0			REV__nc|ENSG00000101972|Q8N3U4|STAG2	REV__nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MSMS	OvCa99_classI_Rep5	1	495.28021240234375	2	495.279315	988.544076	0.40416	0.00020017	1.734	0.0008588	2.1381	0.001059	495.2800653261184	114.78	0.92731	114.78	114.47	115.39	0					41	19	3	0	0	0	0.22621	1	13103	13103		71.877	2.2498	1	363090	+		9694	17530	7936	7945	10593	10593					0.04934617003527819
ESSTAKAFKI	10	Unmodified	_ESSTAKAFKI_					0	0	0		nc|ENSG00000124615|Q9NZB8-7|MOCS1;nc|ENSG00000124615|Q9NZB8-2|MOCS1;nc|ENSG00000124615|Q9NZB8-8|MOCS1;ENSG00000124615|ENST00000340692|MOCS1;nc|ENSG00000124615|Q9NZB8-4|MOCS1;nc|ENSG00000124615|Q9NZB8-3|MOCS1;nc|ENSG00000124615|Q9NZB8-6|MOCS1;nc|ENSG00000124615|Q9NZB8-5|MOCS1	nc|ENSG00000124615|Q9NZB8-7|MOCS1	nc|ENSG00000124615|Q9NZB8-7|MOCS1	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.780517578125	2	541.298039	1080.58152	0.12504	6.7684E-05	1.388	0.0007513	1.513	0.00081898	541.7995545097368	102.79	0.41699	101.27	101.1	101.52	-1.5211					10	7	2	0	0	0	0.026895	1	7102	7102		58.23	3.5076	1	36282			9695	3665	7937	7946	10594	10594					0.04445708269145143
ESSTRVKP	8	Unmodified	_ESSTRVKP_					0	0	0		nc|ENSG00000101004|Q9Y2I6-2|NINL;NINL|p.R1202Efs*7|1|0.18|ENSG00000101004|chr20:25461615-25461615|A/-|frameshift_variant;ENSG00000101004|ENST00000278886|NINL	nc|ENSG00000101004|Q9Y2I6-2|NINL	nc|ENSG00000101004|Q9Y2I6-2|NINL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.2221374511719	2	452.248349	902.482145	0.36442	0.00016481	3.6534	0.0016522	4.0178	0.0018171	452.2498730336261	94.553	1.5408	92.084	91.571	93.111	-2.4685					45	30	2	0	0	0	0.028476	1	8266	8266		11.511	0	1	59811			9696	2133	7938	7947	10595	10595					0.0270031037505305
ESSVKKVLV	9	Unmodified	_ESSVKKVLV_					0	0	0			REV__ENST00000521082.5_1_7:23213987-23214047:+|nuORF	REV__ENST00000521082.5_1_7:23213987-23214047:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.7562255859375	2	494.8055	987.596446	-0.021017	-1.0399E-05	1.3789	0.00068228	1.3579	0.00067188	494.80589390832097	56.329	1.7246	53.035	52.361	54.086	-3.2944					77	33	3	0	0	0	0.027462	1	3561	3561		29.15	1.2673	1	170520	+		9697	27065	7939	7948	10596	10596					0.10215200137156444
ESTFTEKSI	9	Unmodified	_ESTFTEKSI_					0	0	0			REV__ENSG00000197343|ENST00000252713|ZNF655	REV__ENSG00000197343|ENST00000252713|ZNF655	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.3069458007812	2	521.258579	1040.50261	-0.56457	-0.00029429	4.3917	0.0022892	3.8272	0.0019949	521.7603429516101	90.346	0.35709	88.266	88.158	88.516	-2.0805					8	6	2	0	0	0	0.027462	1	5633	5633		23.042	0	1	8482	+		9698	22912	7940	7949	10597	10597					-0.01602563755795927
ESTGSAAPADP	11	Unmodified	_ESTGSAAPADP_					0	0	0			REV__PRUNE2|p.V2237Cfs*11|1|0.06|ENSG00000106772|chr9:76705569-76705570|-/T|frameshift_variant	REV__PRUNE2|p.V2237Cfs*11|1|0.06|ENSG00000106772|chr9:76705569-76705570|-/T|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	501.7242126464844	2	501.722361	1001.43017	0.079648	3.9961E-05	0.18263	9.1629E-05	0.26228	0.00013159	501.72230269373256	71.809	0.65829	71.809	71.507	72.165	0					33	15	4	0	0	0	0.28332	1	6961	6961		69.628	6.0938	1	2065100	+		9699	17824	7941	7950	10598	10598					-0.07048897829383804
ESVGNRLLI	9	Unmodified	_ESVGNRLLI_					0	0	0			REV__nc|ENSG00000076944|Q15833-2|STXBP2	REV__nc|ENSG00000076944|Q15833-2|STXBP2	MULTI-MSMS	OvCa9_classI_Rep2	2	500.79443359375	2	500.792924	999.571294	-0.33552	-0.00016802	3.9077	0.001957	3.5722	0.0017889	500.7948099501536	108.45	4.1006	108.22	107.63	111.73	-0.22498					184	82	6	0	0	0	0.28934	1	10179	10179		64.207	2.0999	1	2094300	+		9700	17000	7942	7951	10599	10599					0.07149145334562945
ESVIERNTI	9	Unmodified	_ESVIERNTI_					0	0	0			REV__ENSG00000177084|ENST00000320574|POLE;REV__POLE|p.R721Efs*71|1|0.03|ENSG00000177084|chr12:132668369-132668369|C/-|frameshift_variant	REV__ENSG00000177084|ENST00000320574|POLE	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2752685546875	2	530.785296	1059.55604	-0.36453	-0.00019349	-1.1635	-0.00061758	-1.528	-0.00081107	530.7844071666814	41.308	0.27021	41.308	41.149	41.42	0					9	5	2	0	0	0	0.027462	1	2550	2550		25.574	0	1	159850	+		9701	21984;29307	7943	7952	10600	10600					0.028642337467317702
ESVLKDPRPIL	11	Unmodified	_ESVLKDPRPIL_					0	0	0		tr|A0A553SM29|A0A553SM29_NIACIPhosphoenolpyruvatecarboxylaseOS=NialliacirculansOX=1397GN=ppcPE=3SV=1	tr|A0A553SM29|A0A553SM29_NIACIPhosphoenolpyruvatecarboxylaseOS=NialliacirculansOX=1397GN=ppcPE=3SV=1	tr|A0A553SM29|A0A553SM29_NIACIPhosphoenolpyruvatecarboxylaseOS=NialliacirculansOX=1397GN=ppcPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	422.9188537597656	3	422.918722	1265.73434	-0.42407	-0.00017935	1.0922	0.0004619	0.6681	0.00028255	422.9191804294928	74.511	2.5984	72.54	72.114	74.713	-1.9711					157	49	5	0	0	0	0.68391	1	6107	6107		35.178	2.4277	1	1026300			9702	33790	7944	7953	10601	10601					0.11209903665758247
ESVLLLTHLTL	11	Unmodified	_ESVLLLTHLTL_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|85|3|sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|85|3|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8678588867188	2	619.871371	1237.72819	-3.8587	-0.0023919	0.76872	0.00047651	-3.09	-0.0019154	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.71498	1	15561	15561		24.519	2.5593	1	492670	+		9703	28193	7945	7954	10602	10602					0.11883385434225602
ESVLSRYPIG	10	Unmodified	_ESVLSRYPIG_					0	0	0			REV__tr|A0A7D6VS36|A0A7D6VS36_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14360PE=4SV=1	REV__tr|A0A7D6VS36|A0A7D6VS36_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14360PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	560.8028564453125	2	560.803488	1119.59242	0.98251	0.00055099	-1.1969	-0.0006712	-0.21435	-0.00012021	560.8027147964513	112.28	0.74033	112.15	111.78	112.52	-0.12174					37	14	3	0	0	0	0.59703	1	10613	10613		42.396	1.618	1	466450	+		9704	31465	7946	7955	10603	10603					0.03741110643431966
ESVNLIKAK	9	Unmodified	_ESVNLIKAK_					0	0	0			REV__tr|A0A7D6VQ54|A0A7D6VQ54_9CLOTRNA-bindingS4domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21725PE=4SV=1	REV__tr|A0A7D6VQ54|A0A7D6VQ54_9CLOTRNA-bindingS4domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21725PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.2276916503906	2	501.303124	1000.5917	-0.23973	-0.00012018	-0.22178	-0.00011118	-0.46151	-0.00023136	501.3027681477335	90.418	0.61139	87.843	87.6	88.212	-2.575					17	11	2	0	0	0	0.027462	1	7785	7785		31.53	8.0071	1	41072	+		9705	31297	7947	7956	10604	10604					0.09142315994381534
ESVPPGTTI	9	Unmodified	_ESVPPGTTI_					0	0	0		ENST00000606952.5_1_1:156182806-156203452:+|nuORF;nc|ENSG00000160783|Q6P1K2-3|PMF1;nc|ENSG00000160783|Q6P1K2-6|PMF1;ENSG00000160783|ENST00000368277|PMF1;nc|ENSG00000160783|Q6P1K2-2|PMF1;nc|ENSG00000160783|Q6P1K2-5|PMF1	ENST00000606952.5_1_1:156182806-156203452:+|nuORF	ENST00000606952.5_1_1:156182806-156203452:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	451.26715087890625	2	450.737283	899.460012	-0.2396	-0.000108	-0.1439	-6.4863E-05	-0.3835	-0.00017286	450.7372476128159	88.697	1.2253	86.566	86.112	87.337	-2.1309					28	24	2	0	0	0	0.027426	1	5414	5414		53.351	19.858	1	41733			9706	6089	7948	7957	10605	10605					0.006260859066173907
ESVPPGTTI	9	Unmodified	_ESVPPGTTI_					0	0	0		ENST00000606952.5_1_1:156182806-156203452:+|nuORF;nc|ENSG00000160783|Q6P1K2-3|PMF1;nc|ENSG00000160783|Q6P1K2-6|PMF1;ENSG00000160783|ENST00000368277|PMF1;nc|ENSG00000160783|Q6P1K2-2|PMF1;nc|ENSG00000160783|Q6P1K2-5|PMF1	ENST00000606952.5_1_1:156182806-156203452:+|nuORF	ENST00000606952.5_1_1:156182806-156203452:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	451.26678466796875	2	450.737283	899.460012	1.0372	0.00046749	-1.0128	-0.00045652	0.024332	1.0967E-05	450.73669422316556	89.434	0.8398	86.849	86.55	87.39	-2.5844					30	16	3	0	0	0	0.027426	1	7666	7666		27.882	0	1	46787			9707	6089	7948	7957	10606	10606					0.006260859066173907
ESVPSSMFIL	10	Unmodified	_ESVPSSMFIL_					0	0	0		RICTOR|p.L1512Tfs*4|1|0.3|ENSG00000164327|chr5:38945587-38945594|GTAGTCCA/-|frameshift_variant;ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR	RICTOR|p.L1512Tfs*4|1|0.3|ENSG00000164327|chr5:38945587-38945594|GTAGTCCA/-|frameshift_variant	RICTOR|p.L1512Tfs*4|1|0.3|ENSG00000164327|chr5:38945587-38945594|GTAGTCCA/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.8019409179688	2	555.281	1108.54745	0.029193	1.621E-05	4.113	0.0022839	4.1422	0.0023001	555.2834938263371	99.036	0.61966	96.711	96.279	96.899	-2.3253					13	11	2	0	0	0	0.026915	1	8808	8808		44.117	8.4985	1	29429			9708	6447	7949	7958	10607	10607					-0.002484562141034985
ESVQALRNSNN	11	Unmodified	_ESVQALRNSNN_					0	0	0			REV__tr|A0A553SKQ4|A0A553SKQ4_NIACI4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=NialliacirculansOX=1397GN=ispHPE=3SV=1	REV__tr|A0A553SKQ4|A0A553SKQ4_NIACI4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=NialliacirculansOX=1397GN=ispHPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	615.8897705078125	2	616.304915	1230.59528	0.62521	0.00038532	-0.15348	-9.4592E-05	0.47173	0.00029073	616.3050718531488	141.48	0.55067	141.48	141.23	141.79	0					22	10	3	0	0	0	0.025344	1	16506	16506		27.047	0	1	71846	+		9709	30144	7950	7959	10608	10608					-0.010796659696779898
ESVRTLTSMF	10	Unmodified	_ESVRTLTSMF_					0	0	0		tr|A0A7D6ZNK4|A0A7D6ZNK4_9CLOTFlagellarproteinexportATPaseFliIOS=ClostridiumintestinaleOX=36845GN=fliIPE=4SV=1	tr|A0A7D6ZNK4|A0A7D6ZNK4_9CLOTFlagellarproteinexportATPaseFliIOS=ClostridiumintestinaleOX=36845GN=fliIPE=4SV=1	tr|A0A7D6ZNK4|A0A7D6ZNK4_9CLOTFlagellarproteinexportATPaseFliIOS=ClostridiumintestinaleOX=36845GN=fliIPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	585.798095703125	2	585.794806	1169.57506	1.7029	0.00099756	-0.17247	-0.00010103	1.5304	0.00089652	585.7945069662969	115.43	0.46957	115.43	115.21	115.68	0					23	9	3	0	0	0	0.49558	1	13184	13184		54.776	0	1	214770			9710	35682	7951	7960	10609	10609					-0.0029455295386924263
ESVSYLIR	8	Unmodified	_ESVSYLIR_					0	0	0			REV__PCDHGA7|p.L604Ifs*113|1|0.17|ENSG00000253537|chr5:141384708-141384709|-/ATAGACGTGGAAATAATAGATATTAATGACAA|frameshift_variant	REV__PCDHGA7|p.L604Ifs*113|1|0.17|ENSG00000253537|chr5:141384708-141384709|-/ATAGACGTGGAAATAATAGATATTAATGACAA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	483.7645263671875	2	483.766374	965.518196	-0.41278	-0.00019969	-2.9048	-0.0014052	-3.3176	-0.0016049	483.76496559732675	24.213	0.90203	24.213	24.036	24.938	0					42	17	4	0	0	0	0.74229	1	413	413		30.504	1.3541	1	1773100	+		9711	23505	7952	7961	10610	10610					0.03405767551919325
ESVTRYPI	8	Unmodified	_ESVTRYPI_					0	0	0			REV__ENST00000488068.5_1_7:143088552-143095662:-|nuORF	REV__ENST00000488068.5_1_7:143088552-143095662:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.755126953125	2	482.758549	963.502546	-0.19275	-9.3051E-05	3.4304	0.001656	3.2376	0.001563	482.76002636237183	58.142	1.7602	54.797	54.24	56	-3.3449					64	34	4	0	0	0	0.60331	1	3765	3765		63.306	5.0763	1	733120	+		9712	20033	7953	7962	10611	10611					0.01933481034848228
ESVVLLYRGH	10	Unmodified	_ESVVLLYRGH_					0	0	0		ENST00000528157.5_1_3:51423732-51425190:+|nuORF	ENST00000528157.5_1_3:51423732-51425190:+|nuORF	ENST00000528157.5_1_3:51423732-51425190:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	587.3272705078125	2	586.824755	1171.63496	0.76579	0.00044939	-0.5483	-0.00032176	0.21749	0.00012763	586.8243055657107	153.39	2.2744	153.39	152.9	155.17	0					137	45	5	0	0	0	0.74374	1	17938	17938		25.574	1.0549	1	2850600			9713	13249	7954	7963	10612	10612					0.056005057716674855
ESYGKDKV	8	Unmodified	_ESYGKDKV_					0	0	0			REV__ENSG00000158480|ENST00000289431|SPATA2	REV__ENSG00000158480|ENST00000289431|SPATA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	463.2785949707031	2	463.234907	924.455261	0.29071	0.00013467	-0.71544	-0.00033142	-0.42473	-0.00019675	463.23463520466345	57.938	0.67194	57.938	57.65	58.322	0					33	15	3	0	0	0	0.028476	1	4855	4855		23.042	15.352	1	933890	+		9714	20567	7955	7964	10613	10613					-0.00998798236150833
ESYRSATL	8	Unmodified	_ESYRSATL_					0	0	0		tr|A0A7D6VSD0|A0A7D6VSD0_9CLOTHistidinol-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_05935PE=3SV=1	tr|A0A7D6VSD0|A0A7D6VSD0_9CLOTHistidinol-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_05935PE=3SV=1	tr|A0A7D6VSD0|A0A7D6VSD0_9CLOTHistidinol-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_05935PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	463.7337646484375	2	463.732532	925.45051	-0.08233	-3.8179E-05	-0.29444	-0.00013654	-0.37677	-0.00017472	463.7324129702948	56.518	1.9341	56.518	56.178	58.112	0					101	45	5	0	0	0	0.25402	1	4709	4709		115.46	0.87315	1	35837000			9715	35015	7956	7965	10614	10614					-0.015196823788983238
ESYVAAPIV	9	Unmodified	_ESYVAAPIV_					0	0	0			REV__ENSG00000145675|ENST00000521381|PIK3R1	REV__ENSG00000145675|ENST00000521381|PIK3R1	MULTI-SECPEP	OvCa9_classI_Rep3	3	475.60919189453125	2	474.755475	947.496398	0.15777	7.4901E-05	3.3267	0.0015794	3.4845	0.0016543	474.7560596308533	81.855	0.34958	79.558	79.335	79.684	-2.2963					9	6	2	0	0	0	0.027462	1	4556	4556		23.042	8.1776	1	13648	+		9716	19974	7957	7966	10615	10615					0.020549628033336376
ESYVAAPIV	9	Unmodified	_ESYVAAPIV_					0	0	0			REV__ENSG00000145675|ENST00000521381|PIK3R1	REV__ENSG00000145675|ENST00000521381|PIK3R1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	474.755475	947.496398	0.26671	0.00012662	10.05	0.0047713	10.317	0.004898	474.7609874669534	81.268	0.25278	79.619	79.514	79.767	-1.6485	0.012108	0.0044711	NaN	23.042	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9485.6	+		9717	19974	7957	7966							0.020549628033336376
ESYVAAPIV	9	Unmodified	_ESYVAAPIV_					0	0	0			REV__ENSG00000145675|ENST00000521381|PIK3R1	REV__ENSG00000145675|ENST00000521381|PIK3R1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	474.755475	947.496398	-0.066745	-3.1688E-05	1.4975	0.00071096	1.4308	0.00067927	474.75524610907104	82.326	0.29372	79.643	79.538	79.832	-2.6829	0.036321	-0.0036497	NaN	23.042	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9488.5	+		9718	19974	7957	7966							0.020549628033336376
ETAARRPSL	9	Unmodified	_ETAARRPSL_					0	0	0			REV__NID1|p.H677Vfs*128|1|0.3|ENSG00000116962|chr1:236024169-236024170|-/AC|frameshift_variant	REV__NID1|p.H677Vfs*128|1|0.3|ENSG00000116962|chr1:236024169-236024170|-/AC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.3041687011719	2	500.780348	999.546142	-0.58803	-0.00029448	-1.1517	-0.00057677	-1.7398	-0.00087124	500.7774517345673	95.493	0.24749	94.465	94.318	94.565	-1.0281					6	4	2	0	0	0	0.027453	1	8587	8587		45.972	1.4412	1	4213	+		9719	29252	7958	7967	10616	10616					0.046350905319854974
ETADRKVKT	9	Unmodified	_ETADRKVKT_					0	0	0		tr|A0A7D7A1W3|A0A7D7A1W3_9CLOTTriggerfactorOS=ClostridiumintestinaleOX=36845GN=tigPE=3SV=1	tr|A0A7D7A1W3|A0A7D7A1W3_9CLOTTriggerfactorOS=ClostridiumintestinaleOX=36845GN=tigPE=3SV=1	tr|A0A7D7A1W3|A0A7D7A1W3_9CLOTTriggerfactorOS=ClostridiumintestinaleOX=36845GN=tigPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2702026367188	2	524.293288	1046.57202	-0.99976	-0.00052417	-1.7906	-0.00093879	-2.7904	-0.001463	524.2925483126199	25.482	0.55121	25.482	25.242	25.793	0					15	10	2	0	0	0	0.027462	1	586	586		40.778	12.896	1	28567			9720	36050	7959	7968	10617	10617					0.050599399836073644
ETAGLLILL	9	Unmodified	_ETAGLLILL_					0	0	0			REV__nc|ENSG00000091181|Q01344-5|IL5RA	REV__nc|ENSG00000091181|Q01344-5|IL5RA	MULTI-MSMS	OvCa99_classI_Rep5	1	471.7987060546875	2	471.797143	941.579734	1.0533	0.00049696	0.71009	0.00033502	1.7634	0.00083198	471.797423947073	123.96	0.67802	123.96	123.65	124.33	0					24	14	2	0	0	0	0.25214	1	14295	14295		68.485	0	1	395730	+		9721	17246	7960	7969	10618	10618					0.10660699251207006
ETAGLLILL	9	Unmodified	_ETAGLLILL_					0	0	0			REV__nc|ENSG00000091181|Q01344-5|IL5RA	REV__nc|ENSG00000091181|Q01344-5|IL5RA	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	471.797143	941.579734	1.0533	0.00049696	0.71009	0.00033502	1.7634	0.00083198	471.797423947073	123.96	0.67802	123.96	123.65	124.33	0	0.22842	0.0011688	NaN	68.485	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	395730	+		9722	17246	7960	7969							0.10660699251207006
ETAGLLILL	9	Unmodified	_ETAGLLILL_					0	0	0			REV__nc|ENSG00000091181|Q01344-5|IL5RA	REV__nc|ENSG00000091181|Q01344-5|IL5RA	MULTI-MATCH	OvCa9_classI_Rep2	2		2	471.797143	941.579734	0.16759	7.9069E-05	-0.18549	-8.7513E-05	-0.017898	-8.4441E-06	471.79689402610126	123.86	0.73994	123.63	123.43	124.17	-0.23193	-0.097185	0.00032374	NaN	68.485	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16961	+		9723	17246	7960	7969							0.10660699251207006
ETAGLLILL	9	Unmodified	_ETAGLLILL_					0	0	0			REV__nc|ENSG00000091181|Q01344-5|IL5RA	REV__nc|ENSG00000091181|Q01344-5|IL5RA	MULTI-MATCH	OvCa9_classI_Rep3	3		2	471.797143	941.579734	2.0203	0.00095316	-2.1022	-0.0009918	-0.08189	-3.8635E-05	471.7961139454088	124.74	0.88892	123.68	123.43	124.32	-1.0519	-0.043212	-0.0014848	NaN	68.485	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42998	+		9724	17246	7960	7969							0.10660699251207006
ETAGLLILL	9	Unmodified	_ETAGLLILL_					0	0	0			REV__nc|ENSG00000091181|Q01344-5|IL5RA	REV__nc|ENSG00000091181|Q01344-5|IL5RA	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	471.797143	941.579734	-0.78568	-0.00037068	0.52147	0.00024603	-0.26421	-0.00012465	471.7973130301496	125.03	0.92422	123.64	123.44	124.36	-1.3908	-0.088023	0.00099082	NaN	68.485	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38861	+		9725	17246	7960	7969							0.10660699251207006
ETAKHQAKCN	10	Unmodified	_ETAKHQAKCN_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN-WDR67|2|fusion;UTRN-WDR67|1|fusion;ENST00000475732.1_1_X:31196784-31201033:-|nuORF;nc|ENSG00000198947|P11532-18|DMD;nc|ENSG00000198947|P11532-9|DMD;nc|ENSG00000152818|P46939-4|UTRN;ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-14|DMD;nc|ENSG00000198947|P11532-17|DMD;nc|ENSG00000198947|P11532-2|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-12|DMD;nc|ENSG00000198947|P11532-15|DMD;nc|ENSG00000198947|P11532-6|DMD;nc|ENSG00000198947|P11532-7|DMD;nc|ENSG00000198947|P11532-8|DMD;nc|ENSG00000198947|P11532-16|DMD;nc|ENSG00000198947|P11532-13|DMD;nc|ENSG00000198947|P11532-5|DMD;nc|ENSG00000152818|P46939-3|UTRN	ENSG00000152818|ENST00000367545|UTRN;ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000152818|P46939-3|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.2974853515625	2	565.274572	1128.53459	0.46802	0.00026456	-3.4814	-0.001968	-3.0134	-0.0017034	565.2725305921091	62.787	0.83598	62.787	62.501	63.337	0					39	20	3	0	0	0	0.02709	1	5677	5677		29.17	18.073	1	660590			9726	5647;8914;15102	7961	7970	10619	10619					-0.02453474553635715
ETAKHQAKCN	10	Unmodified	_ETAKHQAKCN_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN-WDR67|2|fusion;UTRN-WDR67|1|fusion;ENST00000475732.1_1_X:31196784-31201033:-|nuORF;nc|ENSG00000198947|P11532-18|DMD;nc|ENSG00000198947|P11532-9|DMD;nc|ENSG00000152818|P46939-4|UTRN;ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-14|DMD;nc|ENSG00000198947|P11532-17|DMD;nc|ENSG00000198947|P11532-2|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-12|DMD;nc|ENSG00000198947|P11532-15|DMD;nc|ENSG00000198947|P11532-6|DMD;nc|ENSG00000198947|P11532-7|DMD;nc|ENSG00000198947|P11532-8|DMD;nc|ENSG00000198947|P11532-16|DMD;nc|ENSG00000198947|P11532-13|DMD;nc|ENSG00000198947|P11532-5|DMD;nc|ENSG00000152818|P46939-3|UTRN	ENSG00000152818|ENST00000367545|UTRN;ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000152818|P46939-3|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	565.274572	1128.53459	0.6337	0.00035822	-4.3737	-0.0024723	-3.74	-0.0021141	565.2718971950144	66.459	0.58902	62.969	62.853	63.442	-3.4902	0.091087	-0.00059308	NaN	29.17	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45069			9727	5647;8914;15102	7961	7970							-0.02453474553635715
ETAKRLERH	9	Unmodified	_ETAKRLERH_					0	0	0			REV__chr20:38034098-38057532|151|10.03|0.5|4.34|+|2|RPRD1B,RPRD1B|1	REV__chr20:38034098-38057532|151|10.03|0.5|4.34|+|2|RPRD1B,RPRD1B|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	570.2933959960938	2	570.317628	1138.6207	-0.30553	-0.00017425	-1.2251	-0.0006987	-1.5306	-0.00087295	570.3170834940039	44.254	0.3494	41.544	41.452	41.802	-2.7097					8	6	2	0	0	0	0.027462	1	2506	2506		29.15	0	1	6878.2	+		9728	16016	7962	7971	10620	10620					0.05693853343382216
ETAKSKER	8	Unmodified	_ETAKSKER_					0	0	0			REV__ENSG00000178021|ENST00000317802|TSPYL6	REV__ENSG00000178021|ENST00000317802|TSPYL6	MULTI-SECPEP	OvCa9_classI_Rep3	3	475.60968017578125	2	474.759081	947.503609	0.77182	0.00036643	3.1147	0.0014787	3.8865	0.0018452	474.7605249458753	80.6	2.2383	78.278	77.019	79.257	-2.3226					66	43	3	0	0	0	0.028476	1	4529	4529		34.173	3.6689	1	57315	+		9729	22039	7963	7972	10621	10621					0.027756954037613468
ETALFSVAVDS	11	Unmodified	_ETALFSVAVDS_					0	0	0		ENSG00000138073|ENST00000260643|PREB	ENSG00000138073|ENST00000260643|PREB	ENSG00000138073|ENST00000260643|PREB	MULTI-MSMS	OvCa99_classI_Rep5	1	569.78369140625	2	569.784961	1137.55537	2.2518	0.001283	-3.0142	-0.0017175	-0.76245	-0.00043443	569.7831442113951	82.65	1.0582	82.65	82.02	83.078	0					41	18	3	0	0	0	0.38665	1	8556	8556		62.107	1.1355	1	1477900			9730	4653	7964	7973	10622	10622					-0.00790605692986901
ETALFSVAVDS	11	Unmodified	_ETALFSVAVDS_					0	0	0		ENSG00000138073|ENST00000260643|PREB	ENSG00000138073|ENST00000260643|PREB	ENSG00000138073|ENST00000260643|PREB	MULTI-MATCH	OvCa9_classI_Rep2	2		2	569.784961	1137.55537	-1.4375	-0.00081906	-1.5576	-0.00088751	-2.9951	-0.0017066	569.7837967462223	84.074	1.277	82.528	82.172	83.449	-1.5462	-0.01016	0.00083307	NaN	62.107	52	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75535			9731	4653	7964	7973							-0.00790605692986901
ETALFSVAVDS	11	Unmodified	_ETALFSVAVDS_					0	0	0		ENSG00000138073|ENST00000260643|PREB	ENSG00000138073|ENST00000260643|PREB	ENSG00000138073|ENST00000260643|PREB	MULTI-MATCH	OvCa9_classI_Rep3	3		2	569.784961	1137.55537	-1.3567	-0.000773	-1.7833	-0.0010161	-3.14	-0.0017891	569.783653312108	84.782	1.4752	82.521	82.02	83.495	-2.261	-0.017085	0.00057584	NaN	62.107	63	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107290			9732	4653	7964	7973							-0.00790605692986901
ETALFSVAVDS	11	Unmodified	_ETALFSVAVDS_					0	0	0		ENSG00000138073|ENST00000260643|PREB	ENSG00000138073|ENST00000260643|PREB	ENSG00000138073|ENST00000260643|PREB	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	569.784961	1137.55537	1.538	0.00087632	-3.9154	-0.0022309	-2.3774	-0.0013546	569.7825026562551	85.1	1.4736	82.454	82.12	83.593	-2.6463	-0.08449	-0.0018538	NaN	62.107	50	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89768			9733	4653	7964	7973							-0.00790605692986901
ETALHPLWS	9	Unmodified	_ETALHPLWS_					0	0	0			REV__ENST00000490577.5_1_13:50656484-50730996:+|nuORF	REV__ENST00000490577.5_1_13:50656484-50730996:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.8174438476562	2	527.271824	1052.5291	2.8092	0.0014812	-2.3004	-0.0012129	0.50886	0.00026831	527.2702108499288	133.52	0.58432	132	131.76	132.34	-1.5257					16	11	2	0	0	0	0.027462	1	12871	12871		35.618	6.4687	1	30928	+		9734	26656	7965	7974	10623	10623					0.0049316992619878874
ETAQIAGKI	9	Unmodified	_ETAQIAGKI_					0	0	0		nc|ENSG00000204403|Q6UXS9-6|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9-2|CASP12;nc|ENSG00000204403|Q6UXS9-4|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12	nc|ENSG00000204403|Q6UXS9-6|CASP12	nc|ENSG00000204403|Q6UXS9-6|CASP12	MULTI-MSMS	OvCa99_classI_Rep5	1	465.7681884765625	2	465.766374	929.518196	-0.36353	-0.00016932	0.5707	0.00026581	0.20717	9.6493E-05	465.76647990876984	61.324	0.75823	61.324	60.984	61.743	0					30	17	3	0	0	0	0.34132	1	5396	5396		58.23	3.4536	1	815660			9735	15268	7966	7975	10624	10624					0.05061767551910634
ETAQIAGKI	9	Unmodified	_ETAQIAGKI_					0	0	0		nc|ENSG00000204403|Q6UXS9-6|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9-2|CASP12;nc|ENSG00000204403|Q6UXS9-4|CASP12;nc|ENSG00000204403|Q6UXS9|CASP12	nc|ENSG00000204403|Q6UXS9-6|CASP12	nc|ENSG00000204403|Q6UXS9-6|CASP12	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	465.766374	929.518196	0.17169	7.9965E-05	-0.13126	-6.1136E-05	0.040427	1.8829E-05	465.76608492708766	64.965	0.67644	61.479	61.018	61.694	-3.4854	0.077378	-0.00044873	NaN	58.23	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47811			9736	15268	7966	7975							0.05061767551910634
ETAQLLRTI	9	Unmodified	_ETAQLLRTI_					0	0	0			REV__ENSG00000170382|ENST00000367177|LRRN2	REV__ENSG00000170382|ENST00000367177|LRRN2	MULTI-MSMS	OvCa99_classI_Rep5	1	522.8068237304688	2	522.806031	1043.59751	-0.85326	-0.00044609	0.17208	8.9963E-05	-0.68118	-0.00035613	522.8060517130161	55.662	0.98156	55.662	55.358	56.34	0					77	23	5	0	0	0	0.28934	1	4582	4582		64.207	3.2353	1	27365000	+		9737	21536	7967	7976	10625	10625					0.07745414506075576
ETAQLSRELT	10	Unmodified	_ETAQLSRELT_					0	0	0			REV__ENSG00000058453|ENST00000375541|CROCC	REV__ENSG00000058453|ENST00000375541|CROCC	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.838623046875	2	574.30131	1146.58807	1.506	0.0008649	1.0928	0.0006276	2.5988	0.0014925	574.3014365374099	81.795	0.72664	81.795	81.455	82.181	0					41	17	5	0	0	0	0.026803	1	8488	8488		32.751	0	1	906280	+		9738	16728	7968	7977	10626	10626					0.020636014298588634
ETARQVAAR	9	Unmodified	_ETARQVAAR_					0	0	0			REV__sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2	REV__sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.2778625488281	2	501.277972	1000.54139	-1.3508	-0.00067712	1.6692	0.00083672	0.31838	0.0001596	501.2784174588682	41.501	1.3902	38.52	37.97	39.361	-2.9804					41	26	3	0	0	0	0.44568	1	1865	1865		47.657	0	1	170400	+		9739	29393	7969	7978	10627	10627					0.04114206389226638
ETARQVAAR	9	Unmodified	_ETARQVAAR_					0	0	0			REV__sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2	REV__sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2	MULTI-MATCH	OvCa99_classI_Rep5	1		2	501.277972	1000.54139	-0.49637	-0.00024882	-0.013759	-6.8971E-06	-0.51013	-0.00025572	501.27959302690726	38.755	0.57558	38.755	38.531	39.107	0	0.16253	0.00048838	NaN	47.657	33	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100070	+		9740	29393	7969	7978							0.04114206389226638
ETARQVAAR	9	Unmodified	_ETARQVAAR_					0	0	0			REV__sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2	REV__sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	501.277972	1000.54139	0.090115	4.5173E-05	-0.99759	-0.00050007	-0.90747	-0.00045489	501.2773434933486	41.213	0.68945	38.503	38.29	38.98	-2.7097	-0.089993	-0.00049796	NaN	47.657	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47523	+		9741	29393	7969	7978							0.04114206389226638
ETAVANMLVEC	11	Unmodified	_ETAVANMLVEC_					0	0	0			REV__ENSG00000144182|ENST00000651691|LIPT1	REV__ENSG00000144182|ENST00000651691|LIPT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	590.2686767578125	2	590.272849	1178.53115	-6.4648	-0.003816	-0.55019	-0.00032476	-7.015	-0.0041408	590.272448811586	160.41	2.659	158.8	158.24	160.9	-1.6101					174	63	4	0	0	0	0.68021	1	15955	15955		36.447	4.9169	1	264810	+		9742	19893	7970	7979	10628	10628					-0.050979054425170034
ETAVATLPLP	10	Unmodified	_ETAVATLPLP_					0	0	0		ENST00000318006.9_1_15:42500320-42500389:-|nuORF	ENST00000318006.9_1_15:42500320-42500389:-|nuORF	ENST00000318006.9_1_15:42500320-42500389:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.32147216796875	2	506.289682	1010.56481	3.1431	0.0015913	-0.79161	-0.00040079	2.3515	0.0011905	506.2897733122755	133.47	0.63368	131.94	131.76	132.39	-1.5257					13	12	2	0	0	0	0.026871	1	12925	12925		29.15	0	1	9515.9			9743	10360	7971	7980	10629	10629					0.059952073831937014
ETAVLGEITI	10	Unmodified	_ETAVLGEITI_					0	0	0		tr|A0A553SJ84|A0A553SJ84_NIACISortaseOS=NialliacirculansOX=1397GN=CEQ21_16275PE=4SV=1	tr|A0A553SJ84|A0A553SJ84_NIACISortaseOS=NialliacirculansOX=1397GN=CEQ21_16275PE=4SV=1	tr|A0A553SJ84|A0A553SJ84_NIACISortaseOS=NialliacirculansOX=1397GN=CEQ21_16275PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	522.8070678710938	2	523.292422	1044.57029	-0.96444	-0.00050468	-4.3277	-0.0022646	-5.2921	-0.0027693	523.2896241747954	94.279	0.60912	92.384	92.102	92.712	-1.8956					30	11	3	0	0	0	0.026635	1	6074	6074		56.721	21.103	1	133960			9744	33476	7972	7981	10630	10630					0.04978886175013031
ETCALAIFFYL	11	Unmodified	_ETCALAIFFYL_					0	0	0			REV__ENSG00000186440|ENST00000641540|OR6P1	REV__ENSG00000186440|ENST00000641540|OR6P1	MULTI-MSMS	OvCa9_classI_Rep4_	4	430.8857116699219	3	430.886142	1289.6366	0.763	0.00032877	-0.97317	-0.00041932	-0.21016	-9.0556E-05	430.8857606661418	22.115	1.8838	20.776	19.737	21.621	-1.3386					78	40	3	0	0	0	0.69424	1	292	292		31.634	1.0654	1	126830	+		9745	22584	7973	7982	10631	10631					0.003363787453963596
ETCLKLKAL	9	Unmodified	_ETCLKLKAL_					0	0	0			REV__ENSG00000119720|ENST00000354366|NRDE2	REV__ENSG00000119720|ENST00000354366|NRDE2	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.8044128417969	2	509.801903	1017.58925	2.0238	0.0010317	1.6092	0.00082039	3.633	0.0018521	509.80258654056354	136.53	4.9049	134.99	133.61	138.51	-1.5437					290	101	5	0	0	0	0.67509	1	13562	13562		23.042	2.0956	1	173450	+		9746	18464	7974	7983	10632	10632					0.08116144265068215
ETCNAPST	8	Unmodified	_ETCNAPST_					0	0	0		nc|ENSG00000206561|Q9Y215-8|COLQ	nc|ENSG00000206561|Q9Y215-8|COLQ	nc|ENSG00000206561|Q9Y215-8|COLQ	MULTI-MSMS	OvCa9_classI_Rep2	2	411.6664733886719	2	411.668543	821.322533	-4.0802	-0.0016797	0.072531	2.9859E-05	-4.0077	-0.0016498	411.6690234709274	161.87	1.214	161.64	161.33	162.54	-0.22696					65	23	4	0	0	0	0.75241	2	16477	16471;16477		25.45	4.9683	1	44511			9747	15281	7975	7984	10633;10634	10634					-0.09527565964458518
ETCNPPSLN	9	Carbamidomethyl (C)	_ETC(Carbamidomethyl (C))NPPSLN_	ETC(1)NPPSLN		ETC(44)NPPSLN		0	1	0			REV__BRCA1|p.N1265Kfs*4|1|0.89|ENSG00000012048|chr17:43091736-43091737|-/TT|frameshift_variant	REV__BRCA1|p.N1265Kfs*4|1|0.89|ENSG00000012048|chr17:43091736-43091737|-/TT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.2271118164062	2	516.226756	1030.43896	1.1192	0.00057775	-3.6186	-0.001868	-2.4995	-0.0012903	516.2251982549955	85.209	1.4262	82.563	82.167	83.593	-2.6463					71	28	4	0	0	0	0.48047	1	7157	7157		44.377	7.2181	1	275320	+		9748	15709	7976	7985	10635	10635	180				-0.07504247464544278
ETCNPPSLN	9	Carbamidomethyl (C)	_ETC(Carbamidomethyl (C))NPPSLN_					0	1	0			REV__BRCA1|p.N1265Kfs*4|1|0.89|ENSG00000012048|chr17:43091736-43091737|-/TT|frameshift_variant	REV__BRCA1|p.N1265Kfs*4|1|0.89|ENSG00000012048|chr17:43091736-43091737|-/TT|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	516.226756	1030.43896	-0.6007	-0.0003101	-1.4209	-0.00073353	-2.0216	-0.0010436	516.2257774873648	83.868	2.4521	82.322	81.738	84.19	-1.5462	-0.15298	0.00057519	NaN	44.377	78	48	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121280	+		9749	15709	7976	7985			180				-0.07504247464544278
ETCNPPSLN	9	Carbamidomethyl (C)	_ETC(Carbamidomethyl (C))NPPSLN_					0	1	0			REV__BRCA1|p.N1265Kfs*4|1|0.89|ENSG00000012048|chr17:43091736-43091737|-/TT|frameshift_variant	REV__BRCA1|p.N1265Kfs*4|1|0.89|ENSG00000012048|chr17:43091736-43091737|-/TT|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	516.226756	1030.43896	-0.46907	-0.00024215	-2.1018	-0.001085	-2.5709	-0.0013271	516.2255635412919	84.801	1.8283	82.54	82.067	83.895	-2.261	0.065145	-0.00012774	NaN	44.377	79	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	278680	+		9750	15709	7976	7985			180				-0.07504247464544278
ETCPLVLVGLL	11	Unmodified	_ETCPLVLVGLL_					0	0	0			REV__nc|ENSG00000104635|Q15043-3|SLC39A14	REV__nc|ENSG00000104635|Q15043-3|SLC39A14	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.798583984375	2	578.835942	1155.65733	2.0058	0.001161	3.6296	0.0021009	5.6354	0.003262	578.8379269304227	95.911	0.63367	95.911	95.577	96.21	0					27	11	3	0	0	0	0.025746	1	10499	10499		25.574	1.3713	1	1134600	+		9751	28780	7977	7986	10636	10636					0.08572969125089003
ETCPMSELAEK	11	Unmodified	_ETCPMSELAEK_					0	0	0		XIRP1|p.A930Pfs*4|1|0.1|ENSG00000168334|chr3:39186658-39186658|C/-|frameshift_variant;nc|ENSG00000168334|Q702N8-2|XIRP1;XIRP1|p.G1456Efs*25|1|0.07|ENSG00000168334|chr3:39185079-39185080|-/TGGGTGATGTCCTT|frameshift_variant;ENSG00000168334|ENST00000340369|XIRP1	XIRP1|p.A930Pfs*4|1|0.1|ENSG00000168334|chr3:39186658-39186658|C/-|frameshift_variant	XIRP1|p.A930Pfs*4|1|0.1|ENSG00000168334|chr3:39186658-39186658|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	619.37939453125	2	619.275589	1236.53662	0.92066	0.00057014	-3.66	-0.0022666	-2.7394	-0.0016964	619.2733416645027	155.5	1.0209	155.5	155.12	156.14	0					28	19	2	0	0	0	0.025759	1	18291	18291		11.097	0	1	93412			9752	6893	7978	7987	10637	10637					-0.07218226650707038
ETCYGRTRG	9	Unmodified	_ETCYGRTRG_					0	0	0			REV__ENST00000504087.5_1_4:125592428-125592476:-|nuORF	REV__ENST00000504087.5_1_4:125592428-125592476:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.339599609375	2	521.740365	1041.46618	1.6355	0.00085332	-3.0733	-0.0016034	-1.4377	-0.00075011	521.7386310820258	99.771	0.28687	99.771	99.652	99.939	0					11	6	2	0	0	0	0.027462	1	11026	11026		51.335	12.529	1	257890	+		9753	26855	7979	7988	10638	10638					-0.05289719133497783
ETDAAHILKK	10	Unmodified	_ETDAAHILKK_					0	0	0		nc|ENSG00000197826|Q6V702-1|CFAP299	nc|ENSG00000197826|Q6V702-1|CFAP299	nc|ENSG00000197826|Q6V702-1|CFAP299	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.2923583984375	2	563.316763	1124.61897	-2.2778	-0.0012831	0.61596	0.00034698	-1.6618	-0.00093613	563.8180401208266	103.97	0.38242	103.97	103.81	104.19	0					11	8	2	0	0	0	0.026802	1	11635	11635		34.173	0	1	125950			9754	15252	7980	7989	10639	10639					0.06164799534758458
ETDCMYVKLI	10	Unmodified	_ETDCMYVKLI_					0	0	0			REV__DOCK4|p.N328D|1|0.41|ENSG00000128512|chr7:111935624-111935624|T/C|missense_variant	REV__DOCK4|p.N328D|1|0.41|ENSG00000128512|chr7:111935624-111935624|T/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	608.3674926757812	2	607.793417	1213.57228	2.7897	0.0016955	-2.0196	-0.0012275	0.77008	0.00046805	607.7921340403896	115.8	0.46762	115.8	115.49	115.96	0					16	9	2	0	0	0	0.02658	1	13229	13229		64.207	12.872	1	114140	+		9755	16331	7981	7990	10640	10640					-0.02596144403037215
ETDKLRAQL	9	Unmodified	_ETDKLRAQL_					0	0	0			REV__nc|ENSG00000198836|O60313-13|OPA1	REV__nc|ENSG00000198836|O60313-13|OPA1	MULTI-MSMS	OvCa99_classI_Rep5	1	537.3084106445312	2	537.301113	1072.58767	-1.2326	-0.00066228	1.4958	0.00080371	0.26323	0.00014143	537.301821804623	43.756	0.51726	43.756	43.478	43.995	0					32	11	4	0	0	0	0.1804	1	2908	2908		79.713	10.085	1	1924000	+		9756	23073	7982	7991	10641	10641					0.054282265006804664
ETDLNDTAR	9	Unmodified	_ETDLNDTAR_					0	0	0		ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.782470703125	2	517.741085	1033.46762	-0.16198	-8.3863E-05	0.84402	0.00043699	0.68205	0.00035312	517.7412609829353	68.751	1.4233	65.261	64.769	66.192	-3.4902					59	28	3	0	0	0	0.027426	1	5063	5063		66.429	19.663	1	199090			9757	3133	7983	7992	10642	10642					-0.047778065637658074
ETDLNDTAR	9	Unmodified	_ETDLNDTAR_					0	0	0		ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	MULTI-MATCH	OvCa9_classI_Rep2	2		2	517.741085	1033.46762	-0.94215	-0.00048779	1.6926	0.00087631	0.75041	0.00038852	517.7417750391937	67.892	1.2339	65.231	64.743	65.977	-2.661	-0.014654	0.00045181	NaN	66.429	42	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59089			9758	3133	7983	7992							-0.047778065637658074
ETDQWPQKL	9	Unmodified	_ETDQWPQKL_					0	0	0		ENSG00000104960|ENST00000391842|PTOV1;nc|ENSG00000104960|Q86YD1-2|PTOV1;ENST00000601501.5_1_19:50354350-50358367:+|nuORF;ENST00000598632.5_1_19:50354098-50358367:+|nuORF	ENSG00000104960|ENST00000391842|PTOV1	ENSG00000104960|ENST00000391842|PTOV1	MULTI-MSMS	OvCa9_classI_Rep2	2	572.7841796875	2	572.785296	1143.55604	-1.9865	-0.0011378	1.1956	0.0006848	-0.79095	-0.00045304	572.7859809262638	102.03	3.5096	101.27	100.67	104.18	-0.76401					164	70	5	0	0	0	0.46356	1	9408	9408		45.972	0	1	1099900			9759	2411	7984	7993	10643	10643					-0.009997662532896356
ETEATLLQKL	10	Unmodified	_ETEATLLQKL_					0	0	0		ENST00000572253.5_1_17:78055330-78055681:+|nuORF;nc|ENSG00000141519|Q4G0X9-3|CCDC40;ENST00000574799.5_1_17:78022329-78073571:+|nuORF;nc|ENSG00000141519|Q4G0X9-2|CCDC40;ENSG00000141519|ENST00000397545|CCDC40	ENST00000572253.5_1_17:78055330-78055681:+|nuORF	ENST00000572253.5_1_17:78055330-78055681:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	573.3219604492188	2	573.324254	1144.63395	-1.9245	-0.0011034	1.5773	0.00090431	-0.34722	-0.00019907	573.3250796745639	102.5	1.4317	101.81	101.29	102.72	-0.68459					80	28	4	0	0	0	0.49595	1	9438	9438		54.722	0	1	398330			9760	4920	7985	7994	10644	10644					0.06742246612111558
ETEAVVKEKL	10	Unmodified	_ETEAVVKEKL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	OvCa9_classI_Rep3	3	572.7860107421875	2	573.324254	1144.63395	-0.85771	-0.00049175	2.0983	0.001203	1.2406	0.00071125	573.3245049706888	102.77	0.20817	101.24	101.1	101.31	-1.5211					5	3	2	0	0	0	0.02663	1	7082	7082		51.193	0	1	5169.8			9761	3083	7986	7995	10645	10645					0.06742246612111558
ETEDCFWYLN	10	Unmodified	_ETEDCFWYLN_					0	0	0		ENSG00000070019|ENST00000261170|GUCY2C	ENSG00000070019|ENST00000261170|GUCY2C	ENSG00000070019|ENST00000261170|GUCY2C	MULTI-SECPEP	OvCa9_classI_Rep2	2	439.84881591796875	3	440.513144	1318.5176	2.1866	0.00096321	-2.4205	-0.0010663	-0.23396	-0.00010306	440.8473807753137	42.108	0.34555	39.399	39.226	39.571	-2.7097					8	6	2	0	0	0	0.027253	1	2245	2245		20.03	0	1	7570			9762	1416	7987	7996	10646	10646					-0.1289143995008999
ETEDGHESPLF	11	Unmodified	_ETEDGHESPLF_					0	0	0		nc|ENSG00000158623|Q9UBF2-2|COPG2;ENSG00000158623|ENST00000425248|COPG2	nc|ENSG00000158623|Q9UBF2-2|COPG2	nc|ENSG00000158623|Q9UBF2-2|COPG2	MULTI-SECPEP	OvCa99_classI_Rep5	1	421.567626953125	3	420.850814	1259.53061	0.33006	0.00013891	-1.4872	-0.00062588	-1.1571	-0.00048697	420.84996934838176	64.615	0.65949	64.615	64.375	65.034	0					33	15	3	0	0	0	0.025508	1	5862	5862		41.08	0	1	814140			9763	5965	7988	7997	10647	10647					-0.08877285566359205
ETELIYKYSP	10	Unmodified	_ETELIYKYSP_					0	0	0		ENSG00000133422|ENST00000397641|MORC2;MORC2|p.S686Afs*42|1|0.12|ENSG00000133422|chr22:30934896-30934918|TGCACCAGAGGGGCAGGTCGGGA/-|frameshift_variant;nc|ENSG00000133422|Q9Y6X9-2|MORC2	ENSG00000133422|ENST00000397641|MORC2	ENSG00000133422|ENST00000397641|MORC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.2113342285156	3	414.879933	1241.61797	0.36327	0.00015071	-2.7806	-0.0011536	-2.4173	-0.0010029	414.87859174815236	51.068	1.3708	51.068	50.376	51.747	0					46	31	2	0	0	0	0.027062	1	3860	3860		32.751	21.115	1	148460			9764	4220	7989	7998	10648	10648					0.006825403751918202
ETERFIVGIG	10	Unmodified	_ETERFIVGIG_					0	0	0		ENST00000582008.5_1_18:5244203-5244311:+|nuORF	ENST00000582008.5_1_18:5244203-5244311:+|nuORF	ENST00000582008.5_1_18:5244203-5244311:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	560.8033447265625	2	560.803488	1119.59242	0.98251	0.00055099	-1.1969	-0.0006712	-0.21435	-0.00012021	560.8027147964513	112.28	0.74033	112.15	111.78	112.52	-0.12174					37	14	3	0	0	0	0.53885	1	10632	10632		49.442	5.0644	1	466450			9765	14001	7990	7999	10649	10649					0.03741110643454704
ETESLAHLF	9	Unmodified	_ETESLAHLF_					0	0	0		ENST00000395474.7_2_3:49053065-49053377:+|nuORF	ENST00000395474.7_2_3:49053065-49053377:+|nuORF	ENST00000395474.7_2_3:49053065-49053377:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	523.763427734375	2	523.761289	1045.50803	-2.8991	-0.0015184	1.6651	0.00087211	-1.234	-0.00064632	523.7620197599407	104.17	0.97141	104.17	103.77	104.74	0					54	22	4	0	0	0	0.44294	1	11677	11677		47.916	4.2896	1	2170300			9766	11290	7991	8000	10650	10650					-0.01290840173351171
ETETQTCPPH	10	Unmodified	_ETETQTCPPH_					0	0	0		nc|ENSG00000178226|Q5K4E3-2|PRSS36;nc|ENSG00000178226|Q5K4E3-3|PRSS36;ENSG00000178226|ENST00000268281|PRSS36;ENST00000563693.1_1_16:31153020-31154169:-|nuORF	nc|ENSG00000178226|Q5K4E3-2|PRSS36	nc|ENSG00000178226|Q5K4E3-2|PRSS36	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.34326171875	2	571.74277	1141.47099	-0.56231	-0.0003215	-4.0973	-0.0023426	-4.6596	-0.0026641	571.7412755564064	35.997	0.22665	35.997	35.892	36.119	0					7	4	2	0	0	0	0.026493	1	1864	1864		64.207	3.2353	1	17307			9767	7742	7992	8001	10651	10651					-0.09408879781403812
ETFIPLKRS	9	Unmodified	_ETFIPLKRS_					0	0	0			REV__ENSG00000144962|ENST00000351008|SPATA16	REV__ENSG00000144962|ENST00000351008|SPATA16	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.3036499023438	2	545.816399	1089.61824	-0.075738	-4.1339E-05	-0.2644	-0.00014431	-0.34014	-0.00018565	545.8163116901316	115.33	0.69402	113.93	113.67	114.37	-1.3977					17	13	2	0	0	0	0.027462	1	10767	10767		27.882	0	1	10373	+		9768	19946	7993	8002	10652	10652					0.07702004885709357
ETGEGETKFKK	11	Unmodified	_ETGEGETKFKK_					0	0	0		ENSG00000171103|ENST00000306108|TRMT61B	ENSG00000171103|ENST00000306108|TRMT61B	ENSG00000171103|ENST00000306108|TRMT61B	MULTI-SECPEP	OvCa99_classI_Rep5	1	628.3050537109375	2	627.322242	1252.62993	0.30792	0.00019316	-0.29236	-0.00018341	0.015556	9.7587E-06	627.8238104587715	73.812	0.23164	73.812	73.636	73.868	0					10	5	2	0	0	0	0.025864	1	7238	7238		26.063	6.0666	1	211010			9769	7170	7994	8003	10653	10653					0.013721571183623382
ETGFYHVGQ	9	Unmodified	_ETGFYHVGQ_					0	0	0		AluSq2_dup7168|chr2:97646566-97646864:+|1.6500636396219397|0.0010070371600618|10.68|429.0|11|1|anti-sense	AluSq2_dup7168|chr2:97646566-97646864:+|1.6500636396219397|0.0010070371600618|10.68|429.0|11|1|anti-sense	AluSq2_dup7168|chr2:97646566-97646864:+|1.6500636396219397|0.0010070371600618|10.68|429.0|11|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.2881469726562	2	519.237981	1036.46141	-0.24006	-0.00012465	0.59779	0.0003104	0.35773	0.00018575	519.237779723162	78.444	0.94609	75.628	75.263	76.209	-2.8165					44	19	3	0	0	0	0.027462	1	6299	6299		49.442	10.42	1	169540			9770	77	7995	8004	10654	10654					-0.05536280004616856
ETGGIYIIY	9	Unmodified	_ETGGIYIIY_					0	0	0		ENST00000521942.5_1_5:70344502-70358599:-|nuORF	ENST00000521942.5_1_5:70344502-70358599:-|nuORF	ENST00000521942.5_1_5:70344502-70358599:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.2490234375	2	514.768583	1027.52261	1.6812	0.00086542	0.69608	0.00035832	2.3773	0.0012237	514.7687608838663	136.13	0.85091	136.13	135.83	136.68	0					32	17	3	0	0	0	0.027462	1	15902	15902		33.516	0	1	307420			9771	13133	7996	8005	10655	10655					0.009952319748208538
ETGPKHIPL	9	Unmodified	_ETGPKHIPL_					0	0	0		ENSG00000153208|ENST00000295408|MERTK	ENSG00000153208|ENST00000295408|MERTK	ENSG00000153208|ENST00000295408|MERTK	MULTI-SECPEP	OvCa9_classI_Rep2	2	497.2543029785156	2	496.282192	990.549831	-0.50842	-0.00025232	0.63735	0.0003163	0.12893	6.3984E-05	496.2823198069876	76.531	0.83542	74.677	74.308	75.143	-1.854					27	15	2	0	0	0	0.027448	1	6342	6342		44.117	0	1	41758			9772	5667	7997	8006	10656	10656					0.054177603058633395
ETGQCLHV	8	Unmodified	_ETGQCLHV_					0	0	0		ENST00000603821.1_1_4:153247094-153249553:-|nuORF;nc|ENSG00000109670|Q969H0-4|FBXW7;nc|ENSG00000109670|Q969H0-2|FBXW7;ENSG00000109670|ENST00000281708|FBXW7	ENST00000603821.1_1_4:153247094-153249553:-|nuORF	ENST00000603821.1_1_4:153247094-153249553:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	443.7087097167969	2	443.708002	885.401452	-0.34259	-0.00015201	1.3497	0.00059889	1.0071	0.00044688	443.70851840676227	94.403	1.3463	91.935	91.666	93.012	-2.4685					42	26	2	0	0	0	0.68714	1	8262	8262		45.952	0	1	358480			9773	2723	7998	8007	10657	10657					-0.04583293939504074
ETGSLGRPL	9	Unmodified	_ETGSLGRPL_					0	0	0		ENST00000541683.1_1_11:61583368-61584034:-|nuORF;ENST00000473263.1_1_11:61583368-61583614:-|nuORF	ENST00000541683.1_1_11:61583368-61584034:-|nuORF	ENST00000541683.1_1_11:61583368-61584034:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.2566833496094	2	465.256174	928.497795	-0.29719	-0.00013827	0.27937	0.00012998	-0.017825	-8.2931E-06	465.2561910297744	66.663	0.88394	63.173	62.756	63.64	-3.4902					30	17	2	0	0	0	0.071436	1	4877	4877		106.42	14.225	1	655460			9774	12407	7999	8008	10658	10658					0.03068596892092046
ETGSLGRPL	9	Unmodified	_ETGSLGRPL_					0	0	0		ENST00000541683.1_1_11:61583368-61584034:-|nuORF;ENST00000473263.1_1_11:61583368-61583614:-|nuORF	ENST00000541683.1_1_11:61583368-61584034:-|nuORF	ENST00000541683.1_1_11:61583368-61584034:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	465.256174	928.497795	0.91762	0.00042693	-0.60952	-0.00028358	0.30811	0.00014335	465.2557355900088	66.027	0.99566	63.331	62.72	63.716	-2.6958	0.078882	-0.00044304	NaN	106.42	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147970			9775	12407	7999	8008							0.03068596892092046
ETGVTMWVQI	10	Unmodified	_ETGVTMWVQI_					0	0	0			REV__nc|ENSG00000171204|Q8IUX1-2|TMEM126B	REV__nc|ENSG00000171204|Q8IUX1-2|TMEM126B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	581.3583374023438	2	582.291899	1162.56925	-2.8325	-0.0016493	-0.45734	-0.00026631	-3.2898	-0.0019156	582.2917666911985	108.25	0.70308	106.53	106.32	107.02	-1.7256					19	13	2	0	0	0	0.026849	1	9897	9897		32.812	10.853	1	46003	+		9776	29004	8000	8009	10659	10659					-0.005536514655432256
ETGVTMWVQI	10	Unmodified	_ETGVTMWVQI_					0	0	0			REV__nc|ENSG00000171204|Q8IUX1-2|TMEM126B	REV__nc|ENSG00000171204|Q8IUX1-2|TMEM126B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	582.291899	1162.56925	-0.28633	-0.00016673	-2.1615	-0.0012586	-2.4478	-0.0014254	582.2909002035504	106.71	0.74361	106.4	106.23	106.97	-0.30836	-0.10359	-0.00081791	NaN	54.776	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38082	+		9777	29004	8000	8009							-0.005536514655432256
ETGVTMWVQI	10	Unmodified	_ETGVTMWVQI_					0	0	0			REV__nc|ENSG00000171204|Q8IUX1-2|TMEM126B	REV__nc|ENSG00000171204|Q8IUX1-2|TMEM126B	MULTI-MATCH	OvCa9_classI_Rep3	3		2	582.291899	1162.56925	-0.93826	-0.00054634	-1.8876	-0.0010991	-2.8258	-0.0016455	582.2909595300976	107.78	0.79182	106.58	106.27	107.06	-1.1978	0.07874	-0.0004989	NaN	54.776	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31079	+		9778	29004	8000	8009							-0.005536514655432256
ETGWASTLI	9	Unmodified	_ETGWASTLI_					0	0	0		chr21:17917400-18027869|337|29.42|0.02|10.36|+|2|TE_info:MLT1A0,MLT1A0_dup20031,ERVL-MaLR,LTR,acceptor,+,18027869,18028046|CHODL,None|2	chr21:17917400-18027869|337|29.42|0.02|10.36|+|2|TE_info:MLT1A0,MLT1A0_dup20031,ERVL-MaLR,LTR,acceptor,+,18027869,18028046|CHODL,None|2	chr21:17917400-18027869|337|29.42|0.02|10.36|+|2|TE_info:MLT1A0,MLT1A0_dup20031,ERVL-MaLR,LTR,acceptor,+,18027869,18028046|CHODL,None|2	MULTI-MSMS	OvCa99_classI_Rep5	1	489.25006103515625	2	489.250557	976.486562	-0.62382	-0.00030521	-4.3551	-0.0021307	-4.9789	-0.0024359	489.24866015695807	54.916	0.96942	54.916	54.59	55.559	0					53	22	5	0	0	0	0.098892	1	4456	4456		97.473	12.312	1	3021600			9779	459	8001	8010	10660	10660					-0.0026222520202736632
ETHAAYVSKD	10	Unmodified	_ETHAAYVSKD_					0	0	0			REV__ENST00000574370.1_1_17:1957884-1957992:+|nuORF	REV__ENST00000574370.1_1_17:1957884-1957992:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.7338256835938	2	560.767103	1119.51965	0.97839	0.00054865	-2.902	-0.0016274	-1.9236	-0.0010787	560.7649468852385	162.37	0.60445	162.37	161.92	162.53	0					13	11	2	0	0	0	0.026956	1	19022	19022		26.693	6.6961	1	23560	+		9780	27763	8002	8011	10661	10661					-0.03532643149992509
ETHEELPCP	9	Unmodified	_ETHEELPCP_					0	0	0			REV__ENST00000577422.5_1_17:55943840-55944653:-|nuORF	REV__ENST00000577422.5_1_17:55943840-55944653:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.7627563476562	2	527.729132	1053.44371	0.85486	0.00045113	-1.3604	-0.0007179	-0.50551	-0.00026677	527.7282686982642	121.93	1.2048	120.9	120.33	121.53	-1.0286					37	22	2	0	0	0	0.027456	1	9328	9328		30.504	9.5567	1	36609	+		9781	27792	8003	8012	10662	10662					-0.08087363321806151
ETHIRVPA	8	Unmodified	_ETHIRVPA_					0	0	0		nc|ENSG00000159217|Q9NZI8-2|IGF2BP1;ENSG00000159217|ENST00000290341|IGF2BP1	nc|ENSG00000159217|Q9NZI8-2|IGF2BP1	nc|ENSG00000159217|Q9NZI8-2|IGF2BP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	461.7601013183594	2	461.758884	921.503215	-1.5521	-0.00071668	1.3905	0.00064206	-0.16158	-7.4611E-05	461.7594239038764	48.635	0.9375	45.528	45.296	46.233	-3.1077					47	17	3	0	0	0	0.59148	1	2692	2692		65.803	7.0212	1	522860			9782	5997	8004	8013	10663	10663					0.039323204745642215
ETHIRVPA	8	Unmodified	_ETHIRVPA_					0	0	0		nc|ENSG00000159217|Q9NZI8-2|IGF2BP1;ENSG00000159217|ENST00000290341|IGF2BP1	nc|ENSG00000159217|Q9NZI8-2|IGF2BP1	nc|ENSG00000159217|Q9NZI8-2|IGF2BP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	461.758884	921.503215	-0.84333	-0.00038942	0.77935	0.00035987	-0.063979	-2.9543E-05	461.75911794439344	48.451	0.94637	45.691	45.329	46.276	-2.7603	0.081499	-0.0003704	NaN	65.803	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79959			9783	5997	8004	8013							0.039323204745642215
ETHISVVIL	9	Unmodified	_ETHISVVIL_					0	0	0			REV__ENSG00000172772|ENST00000395079|OR10W1	REV__ENSG00000172772|ENST00000395079|OR10W1	MSMS	OvCa99_classI_Rep5	1	505.7989501953125	2	505.797675	1009.5808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.2	1	114.2	113.7	114.7	0								0	0	0	0.16762	1	13030	13030		57.811	0	1		+		9784	21726	8005	8014	10664	10664					0.07638913620110088
ETHKAIQALN	10	Unmodified	_ETHKAIQALN_					0	0	0		nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60;SCRIB-PUF60|2|fusion;SCRIB-PUF60|1|fusion	nc|ENSG00000179950|Q9UHX1-4|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.8215942382812	2	562.806562	1123.59857	3.9866	0.0022437	1.7227	0.00096954	5.7093	0.0032132	562.8073656722692	97.562	0.42929	97.562	97.267	97.696	0					14	9	2	0	0	0	0.026931	1	10717	10717		17.468	0	1	178890			9785	7850	8006	8015	10665	10665					0.04171628874951239
ETHYEGREI	9	Unmodified	_ETHYEGREI_					0	0	0			REV__tr|A0A553SJ43|A0A553SJ43_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_16070PE=4SV=1	REV__tr|A0A553SJ43|A0A553SJ43_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_16070PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.3212280273438	2	567.264727	1132.5149	0.29099	0.00016507	3.5084	0.0019902	3.7994	0.0021553	567.2665801223172	94.035	0.8688	91.528	91.302	92.171	-2.5072					29	17	2	0	0	0	0.02744	1	8224	8224		62.107	0	1	74976	+		9786	29963	8007	8016	10666	10666					-0.04605527292756051
ETIAVISIL	9	Unmodified	_ETIAVISIL_					0	0	0		tr|A0A553SJM0|A0A553SJM0_NIACIGlycosyltransferasefamily39proteinOS=NialliacirculansOX=1397GN=CEQ21_17055PE=4SV=1	tr|A0A553SJM0|A0A553SJM0_NIACIGlycosyltransferasefamily39proteinOS=NialliacirculansOX=1397GN=CEQ21_17055PE=4SV=1	tr|A0A553SJM0|A0A553SJM0_NIACIGlycosyltransferasefamily39proteinOS=NialliacirculansOX=1397GN=CEQ21_17055PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	479.79638671875	2	479.794601	957.574648	1.8882	0.00090593	1.6311	0.00078259	3.5193	0.0016885	479.7952627701342	81.872	1.0591	81.872	81.248	82.307	0					52	25	3	0	0	0	0.29717	1	8438	8438		63.306	9.9548	1	2302500			9787	33517	8008	8017	10667	10667					0.09416395388586807
ETIERYNID	9	Unmodified	_ETIERYNID_					0	0	0		tr|A0A7D7A2L9|A0A7D7A2L9_9CLOTPhosphodiesterglycosidasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09065PE=4SV=1	tr|A0A7D7A2L9|A0A7D7A2L9_9CLOTPhosphodiesterglycosidasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09065PE=4SV=1	tr|A0A7D7A2L9|A0A7D7A2L9_9CLOTPhosphodiesterglycosidasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09065PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.8038940429688	2	576.78021	1151.54587	-0.80814	-0.00046612	2.5059	0.0014453	1.6977	0.00097921	576.7819554493266	80.46	1.6256	78.137	77.581	79.206	-2.3226					86	31	4	0	0	0	0.027462	1	4454	4454		27.882	0	1	322810			9788	36085	8009	8018	10668	10668					-0.023843739785206708
ETIFKDISVE	10	Unmodified	_ETIFKDISVE_					0	0	0		tr|A0A7D6ZZN2|A0A7D6ZZN2_9CLOTDecarboxylating6-phosphogluconatedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=gndPE=3SV=1	tr|A0A7D6ZZN2|A0A7D6ZZN2_9CLOTDecarboxylating6-phosphogluconatedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=gndPE=3SV=1	tr|A0A7D6ZZN2|A0A7D6ZZN2_9CLOTDecarboxylating6-phosphogluconatedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=gndPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	590.8075561523438	2	590.808436	1179.60232	0.64738	0.00038248	-4.0739	-0.0024069	-3.4265	-0.0020244	590.8058621093834	160.22	2.2185	160.22	159.86	162.07	0					115	43	5	0	0	0	0.5635	1	18824	18824		46.457	0.48454	1	904270			9789	35968	8010	8019	10669	10669					0.019702538581213958
ETIIKAKKQIN	11	Unmodified	_ETIIKAKKQIN_					0	0	0			REV__tr|A0A553SMU4|A0A553SMU4_NIACIFAD-bindingPCMH-typedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23080PE=4SV=1	REV__tr|A0A553SMU4|A0A553SMU4_NIACIFAD-bindingPCMH-typedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23080PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	643.2990112304688	2	643.395544	1284.77654	2.9122	0.0018737	3.6565	0.0023525	6.5686	0.0042262	643.3984546975294	100.71	0.20681	100.71	100.65	100.86	0					7	4	2	0	0	0	0.026113	1	11188	11188		5.5578	0	1	397150	+		9790	30371	8011	8020	10670	10670					0.14553879074128417
ETIKIVPGRRN	11	Unmodified	_ETIKIVPGRRN_					0	0	0			REV__CON__Q0VBK2	REV__CON__Q0VBK2	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8822021484375	2	641.883136	1281.75172	-5.3554	-0.0034376	4.4876	0.0028805	-0.86781	-0.00055703	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.72473	1	13239	13239		19.104	1.6355	1	804890	+	+	9791	16199	8012	8021	10671	10671					0.12211243991418996
ETIQADTPAL	10	Unmodified	_ETIQADTPAL_					0	0	0		nc|ENSG00000125686|Q15648-3|MED1;ENSG00000125686|ENST00000300651|MED1	nc|ENSG00000125686|Q15648-3|MED1	nc|ENSG00000125686|Q15648-3|MED1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7789306640625	2	529.771854	1057.52915	0.38101	0.00020185	-3.6938	-0.0019569	-3.3128	-0.001755	529.7695791602948	67.279	0.27222	67.279	67.136	67.408	0					8	6	2	0	0	0	0.026573	1	6305	6305		70.816	16.04	1	120320			9792	3722	8013	8022	10672	10672					0.002691251355145141
ETIRYLAALV	10	Unmodified	_ETIRYLAALV_					0	0	0		ENST00000514414.1_1_4:74951714-74951975:-|nuORF	ENST00000514414.1_1_4:74951714-74951975:-|nuORF	ENST00000514414.1_1_4:74951714-74951975:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	574.8373413085938	2	574.837331	1147.66011	0.90554	0.00052054	-1.424	-0.00081856	-0.51844	-0.00029802	574.8365086671698	89.906	5.8582	88.604	88.285	94.143	-1.302					235	114	5	0	0	0	0.65849	1	7981	7981		35.152	2.3396	1	3839600			9793	13027	8014	8023	10673	10673					0.09218560574208823
ETISRKLSK	9	Unmodified	_ETISRKLSK_					0	0	0		tr|A0A7D6VV47|A0A7D6VV47_9CLOTCrp/FnrfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_22915PE=4SV=1	tr|A0A7D6VV47|A0A7D6VV47_9CLOTCrp/FnrfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_22915PE=4SV=1	tr|A0A7D6VV47|A0A7D6VV47_9CLOTCrp/FnrfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_22915PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.2772216796875	2	531.319306	1060.62406	-0.7842	-0.00041666	3.7888	0.0020131	3.0046	0.0015964	531.3200637467069	87.05	0.3485	84.423	84.25	84.599	-2.6269					9	6	2	0	0	0	0.027462	1	7378	7378		51.193	17.02	1	12610			9794	35213	8015	8024	10674	10674					0.0961710339736328
ETISRKLSK	9	Unmodified	_ETISRKLSK_					0	0	0		tr|A0A7D6VV47|A0A7D6VV47_9CLOTCrp/FnrfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_22915PE=4SV=1	tr|A0A7D6VV47|A0A7D6VV47_9CLOTCrp/FnrfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_22915PE=4SV=1	tr|A0A7D6VV47|A0A7D6VV47_9CLOTCrp/FnrfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_22915PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	531.319306	1060.62406	-0.8851	-0.00047027	9.0219	0.0047935	8.1368	0.0043232	531.8251438237487	86.822	0.20236	84.645	84.531	84.734	-2.1768	0.11071	0.0026907	NaN	51.193	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7011.7			9795	35213	8015	8024							0.0961710339736328
ETIVSIIKV	9	Unmodified	_ETIVSIIKV_					0	0	0			REV__tr|A0A7D6VQA7|A0A7D6VQA7_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22455PE=3SV=1	REV__tr|A0A7D6VQA7|A0A7D6VQA7_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22455PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.30230712890625	2	501.3157	1000.61685	-1.2566	-0.00062993	0.47986	0.00024056	-0.7767	-0.00038937	501.3157859351122	99.422	1.2897	98.592	98.318	99.608	-0.83051					45	25	2	0	0	0	0.027418	1	9043	9043		79.451	11.957	1	109970	+		9796	31310	8016	8025	10675	10675					0.11656370796947613
ETIYKLRPKI	10	Unmodified	_ETIYKLRPKI_					0	0	0			REV__tr|A0A7D6VTQ6|A0A7D6VTQ6_9CLOTProbablemultidrugresistanceproteinNorMOS=ClostridiumintestinaleOX=36845GN=HZF06_22170PE=4SV=1	REV__tr|A0A7D6VTQ6|A0A7D6VTQ6_9CLOTProbablemultidrugresistanceproteinNorMOS=ClostridiumintestinaleOX=36845GN=HZF06_22170PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	420.9281005859375	3	420.927329	1259.76016	-0.40847	-0.00017194	0.29792	0.0001254	-0.11055	-4.6533E-05	420.92744774972056	69.031	2.0508	66.41	66.118	68.168	-2.6203					127	40	5	0	0	0	0.41036	1	5476	5476		66.962	13.873	1	1205300	+		9797	31623	8017	8026	10676	10676					0.1406679790804901
ETIYKLRPKI	10	Unmodified	_ETIYKLRPKI_					0	0	0			REV__tr|A0A7D6VTQ6|A0A7D6VTQ6_9CLOTProbablemultidrugresistanceproteinNorMOS=ClostridiumintestinaleOX=36845GN=HZF06_22170PE=4SV=1	REV__tr|A0A7D6VTQ6|A0A7D6VTQ6_9CLOTProbablemultidrugresistanceproteinNorMOS=ClostridiumintestinaleOX=36845GN=HZF06_22170PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	420.9272155761719	3	420.927329	1259.76016	1.2533	0.00052756	-1.2851	-0.00054095	-0.031812	-1.3391E-05	420.9267661520996	69.682	2.4064	66.928	66.572	68.979	-2.754					153	47	6	0	0	0	0.50873	2	3138	3138;3145		53.089	12.009	1	1507300	+		9798	31623	8017	8026	10677;10678	10677					0.1406679790804901
ETIYKLRPKI	10	Unmodified	_ETIYKLRPKI_					0	0	0			REV__tr|A0A7D6VTQ6|A0A7D6VTQ6_9CLOTProbablemultidrugresistanceproteinNorMOS=ClostridiumintestinaleOX=36845GN=HZF06_22170PE=4SV=1	REV__tr|A0A7D6VTQ6|A0A7D6VTQ6_9CLOTProbablemultidrugresistanceproteinNorMOS=ClostridiumintestinaleOX=36845GN=HZF06_22170PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	420.92822265625	3	420.927329	1259.76016	-1.1533	-0.00048544	1.0799	0.00045454	-0.073411	-3.0901E-05	420.92781623886106	70.392	1.7502	66.911	66.589	68.339	-3.4812					123	35	5	0	0	0	0.45953	1	5319	5319		59.931	13.474	1	1320300	+		9799	31623	8017	8026	10679	10679					0.1406679790804901
ETKADYISI	9	Unmodified	_ETKADYISI_					0	0	0			REV__ENST00000515730.1_1_8:87493985-87494276:-|nuORF	REV__ENST00000515730.1_1_8:87493985-87494276:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.7922973632812	2	520.268947	1038.52334	-0.28506	-0.00014831	1.8251	0.00094956	1.5401	0.00080125	520.2694269832043	86.07	0.9726	84.579	84.196	85.168	-1.4906					26	18	2	0	0	0	0.027432	1	7494	7494		67.494	21.542	1	31569	+		9800	27005	8018	8027	10680	10680					0.005620266238793192
ETKAKRKR	8	Unmodified	_ETKAKRKR_					0	0	0		ENSG00000164754|ENST00000297338|RAD21;RAD21-EIF3H|4|fusion	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-SECPEP	OvCa9_classI_Rep3	3	509.7876892089844	2	508.819807	1015.62506	-0.87682	-0.00044614	1.7534	0.00089214	0.87654	0.000446	508.82057751597665	100.15	1.7487	98.542	98.17	99.919	-1.6053					79	34	3	0	0	0	0.028476	1	6852	6852		30.504	0	1	848650			9801	6484	8019	8028	10681	10681					0.117873625569473
ETKAKSTLAH	10	Unmodified	_ETKAKSTLAH_					0	0	0		ENSG00000264424|ENST00000255381|MYH4	ENSG00000264424|ENST00000255381|MYH4	ENSG00000264424|ENST00000255381|MYH4	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8095703125	2	543.301113	1084.58767	2.0121	0.0010932	3.0839	0.0016755	5.096	0.0027686	543.3027481817019	102.91	0.923	102.91	102.5	103.43	0					40	21	3	0	0	0	0.026659	1	11437	11437		37.812	8.662	1	3005900			9802	9518	8020	8029	10682	10682					0.04876226500641678
ETKALLISL	9	Unmodified	_ETKALLISL_					0	0	0		nc|ENSG00000001631|O00522-3|KRIT1;ENSG00000001631|ENST00000394505|KRIT1;nc|ENSG00000001631|O00522-2|KRIT1;ENST00000486261.5_1_7:91830052-91864980:-|nuORF;ENST00000475770.5_1_7:91830052-91864980:-|nuORF	nc|ENSG00000001631|O00522-3|KRIT1	nc|ENSG00000001631|O00522-3|KRIT1	MULTI-MSMS	OvCa99_classI_Rep5	1	494.3056640625	2	494.307875	986.601197	-1.009	-0.00049876	-0.67797	-0.00033512	-1.687	-0.00083389	494.30769469179194	26.77	0.34928	26.77	26.542	26.892	0					11	6	3	0	0	0	0.63422	1	732	732		27.882	2.4321	1	47668			9803	808	8021	8030	10683	10683					0.10736084279915303
ETKDHAVDLI	10	Unmodified	_ETKDHAVDLI_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-SECPEP	OvCa9_classI_Rep3	3	570.7820434570312	2	570.798403	1139.58225	-1.7679	-0.0010091	-0.4873	-0.00027815	-2.2552	-0.0012873	570.7981471943378	92.978	1.0823	91.017	90.698	91.78	-1.9617					44	21	3	0	0	0	0.026849	1	5966	5966		32.812	1.2826	1	168140			9804	9254	8022	8031	10684	10684					0.018045029182076178
ETKEGLEQAL	10	Unmodified	_ETKEGLEQAL_					0	0	0		ENSG00000049283|ENST00000268933|EPN3;ENST00000512379.5_1_17:48610205-48619515:+|nuORF	ENSG00000049283|ENST00000268933|EPN3	ENSG00000049283|ENST00000268933|EPN3	MULTI-MSMS	OvCa9_classI_Rep2	2	559.2896728515625	2	559.290411	1116.56627	0.58769	0.00032869	-0.83148	-0.00046504	-0.24379	-0.00013635	559.2898256718978	123.34	1.5779	123.12	122.71	124.29	-0.21803					88	31	4	0	0	0	0.25842	1	11977	11977		85.862	5.4072	1	476500			9805	1167	8023	8032	10685	10685					0.012647966812892264
ETKEGLEQAL	10	Unmodified	_ETKEGLEQAL_					0	0	0		ENSG00000049283|ENST00000268933|EPN3;ENST00000512379.5_1_17:48610205-48619515:+|nuORF	ENSG00000049283|ENST00000268933|EPN3	ENSG00000049283|ENST00000268933|EPN3	MULTI-MSMS	OvCa9_classI_Rep3	3	559.2918701171875	2	559.290411	1116.56627	1.0679	0.00059727	-0.91057	-0.00050927	0.15734	8.7999E-05	559.289786703432	123.89	1.2949	122.85	122.51	123.81	-1.0377					64	24	4	0	0	0	0.10472	1	9587	9587		112.41	5.4034	1	395230			9806	1167	8023	8032	10686	10686					0.012647966812892264
ETKEMPKLQ	9	Unmodified	_ETKEMPKLQ_					0	0	0		ZBTB38|p.Y1070Wfs*9|1|0.19|ENSG00000177311|chr3:141445596-141445597|-/GG|frameshift_variant;ENSG00000177311|ENST00000321464|ZBTB38	ZBTB38|p.Y1070Wfs*9|1|0.19|ENSG00000177311|chr3:141445596-141445597|-/GG|frameshift_variant	ZBTB38|p.Y1070Wfs*9|1|0.19|ENSG00000177311|chr3:141445596-141445597|-/GG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.2919921875	2	552.291899	1102.56925	-0.038714	-2.1381E-05	-3.5239	-0.0019462	-3.5626	-0.0019676	552.2898704269146	96.015	2.273	93.589	93.304	95.577	-2.4256					110	44	3	0	0	0	0.28934	1	8477	8477		64.207	2.0999	1	556830			9807	7671	8024	8033	10687	10687					0.022063485344460787
ETKGFNKKD	9	Unmodified	_ETKGFNKKD_					0	0	0		nc|ENSG00000120539|Q96GX5-2|MASTL;nc|ENSG00000120539|Q96GX5-3|MASTL;ENSG00000120539|ENST00000375940|MASTL	nc|ENSG00000120539|Q96GX5-2|MASTL	nc|ENSG00000120539|Q96GX5-2|MASTL	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.2985229492188	2	533.780013	1065.54547	1.7354	0.00092632	-2.9629	-0.0015816	-1.2275	-0.00065524	533.7781862719391	127.87	0.23112	127.87	127.67	127.9	0					5	4	2	0	0	0	0.027462	1	14785	14785		27.882	2.3082	1	21062			9808	3434	8025	8034	10688	10688					0.015322510922715082
ETKGIEMKVN	10	Oxidation (M)	_ETKGIEM(Oxidation (M))KVN_		ETKGIEM(1)KVN		ETKGIEM(40)KVN	0	0	1			REV__BRCA2|p.L3172Afs*44|1|0.79|ENSG00000139618|chr13:32396908-32396911|TACT/-|frameshift_variant	REV__BRCA2|p.L3172Afs*44|1|0.79|ENSG00000139618|chr13:32396908-32396911|TACT/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	582.80224609375	2	582.800088	1163.58562	1.1315	0.00065944	0.99393	0.00057926	2.1254	0.0012387	582.8006818033648	147.53	6.6763	147.53	147.01	153.69	0					349	139	4	0	0	0	0.61634	1	17768	17768		40.058	9.7405	1	20317000	+		9809	15710	8026	8035	10689	10689		382			0.01037429700568282
ETKGLVKIL	9	Unmodified	_ETKGLVKIL_					0	0	0			REV__ENST00000554882.5_1_14:31583096-31583144:-|nuORF	REV__ENST00000554882.5_1_14:31583096-31583144:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.3041687011719	2	500.823692	999.632832	-0.45555	-0.00022815	-0.56919	-0.00028506	-1.0247	-0.00051321	500.823118350892	95.783	0.89496	94.755	94.466	95.361	-1.0281					24	17	2	0	0	0	0.027426	1	8587	8587		56.721	4.4219	1	26194	+		9810	27535	8027	8036	10690	10690					0.13300077033864
ETKGRYCV	8	Carbamidomethyl (C)	_ETKGRYC(Carbamidomethyl (C))V_	ETKGRYC(1)V		ETKGRYC(41)V		0	1	0		ENST00000417510.5_1_17:16722254-16722455:-|nuORF	ENST00000417510.5_1_17:16722254-16722455:-|nuORF	ENST00000417510.5_1_17:16722254-16722455:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	506.74908447265625	2	506.747659	1011.48076	0.59942	0.00030376	1.0603	0.00053729	1.6597	0.00084104	506.74801300411247	141.13	0.95381	141.13	140.78	141.74	0					51	18	4	0	0	0	0.71369	1	16524	16524		40.573	10.069	1	410360			9811	11622	8028	8037	10691	10691	123				-0.024516469853665512
ETKIKIYF	8	Unmodified	_ETKIKIYF_					0	0	0			REV__tr|A0A553SRR0|A0A553SRR0_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_01580PE=3SV=1;REV__tr|A0A553SRX1|A0A553SRX1_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_01960PE=3SV=1	REV__tr|A0A553SRR0|A0A553SRR0_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_01580PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	521.3038330078125	2	521.302593	1040.59063	1.9172	0.00099946	-2.7676	-0.0014428	-0.85039	-0.00044331	521.3005369669428	99.51	0.90781	99.51	99.076	99.984	0					42	21	3	0	0	0	0.68714	1	10992	10992		45.952	5.3793	1	2576600	+		9812	30756;30772	8029	8038	10692	10692					0.07196101625481788
ETKIKVLEI	9	Unmodified	_ETKIKVLEI_					0	0	0		tr|A0A553SKX5|A0A553SKX5_NIACIGeranyltranstransferaseOS=NialliacirculansOX=1397GN=CEQ21_19520PE=3SV=1	tr|A0A553SKX5|A0A553SKX5_NIACIGeranyltranstransferaseOS=NialliacirculansOX=1397GN=CEQ21_19520PE=3SV=1	tr|A0A553SKX5|A0A553SKX5_NIACIGeranyltranstransferaseOS=NialliacirculansOX=1397GN=CEQ21_19520PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.837646484375	2	536.834257	1071.65396	1.9759	0.0010607	-0.37252	-0.00019998	1.6033	0.00086073	536.8340070991325	77.499	0.88461	77.499	77.168	78.053	0					48	20	3	0	0	0	0.38969	1	7824	7824		52.937	0	1	414530			9813	33663	8030	8039	10693	10693					0.12100042342694906
ETKIKVLEI	9	Unmodified	_ETKIKVLEI_					0	0	0		tr|A0A553SKX5|A0A553SKX5_NIACIGeranyltranstransferaseOS=NialliacirculansOX=1397GN=CEQ21_19520PE=3SV=1	tr|A0A553SKX5|A0A553SKX5_NIACIGeranyltranstransferaseOS=NialliacirculansOX=1397GN=CEQ21_19520PE=3SV=1	tr|A0A553SKX5|A0A553SKX5_NIACIGeranyltranstransferaseOS=NialliacirculansOX=1397GN=CEQ21_19520PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	536.834257	1071.65396	1.2892	0.00069211	-1.1407	-0.00061235	0.14857	7.9758E-05	537.3349196371213	80.175	0.45116	77.835	77.612	78.063	-2.3399	0.17701	-0.00070615	NaN	52.937	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23576			9814	33663	8030	8039							0.12100042342694906
ETKIKVLEI	9	Unmodified	_ETKIKVLEI_					0	0	0		tr|A0A553SKX5|A0A553SKX5_NIACIGeranyltranstransferaseOS=NialliacirculansOX=1397GN=CEQ21_19520PE=3SV=1	tr|A0A553SKX5|A0A553SKX5_NIACIGeranyltranstransferaseOS=NialliacirculansOX=1397GN=CEQ21_19520PE=3SV=1	tr|A0A553SKX5|A0A553SKX5_NIACIGeranyltranstransferaseOS=NialliacirculansOX=1397GN=CEQ21_19520PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	536.834257	1071.65396	-1.5565	-0.00083557	-0.37131	-0.00019933	-1.9278	-0.0010349	537.334293398617	80.351	0.39531	77.64	77.367	77.762	-2.7106	-0.017844	0.0001199	NaN	52.937	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31831			9815	33663	8030	8039							0.12100042342694906
ETKLFTAKL	9	Unmodified	_ETKLFTAKL_					0	0	0		nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	MULTI-MSMS	OvCa9_classI_Rep2	2	525.8115234375	2	525.813325	1049.6121	-0.54659	-0.0002874	-0.30508	-0.00016042	-0.85167	-0.00044782	525.8130999174671	94.535	1.6279	93.435	93.114	94.742	-1.0995					76	32	5	0	0	0	0.14855	1	8472	8472		85.161	2.4103	1	526540			9816	1657	8031	8040	10694	10694					0.08927486654192762
ETKLGKHASRR	11	Unmodified	_ETKLGKHASRR_					0	0	0		PALLD|p.E88K|1|0.27|ENSG00000129116|chr4:168511766-168511766|G/A|missense_variant	PALLD|p.E88K|1|0.27|ENSG00000129116|chr4:168511766-168511766|G/A|missense_variant	PALLD|p.E88K|1|0.27|ENSG00000129116|chr4:168511766-168511766|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	428.2164611816406	3	428.249465	1281.72657	-0.52857	-0.00022636	-3.7938	-0.0016247	-4.3223	-0.001851	428.24748414080864	42.22	0.59959	42.22	41.853	42.453	0					17	13	2	0	0	0	0.02525	1	2693	2693		22.781	0	1	104850			9817	15473	8032	8041	10695	10695					0.09697189188818811
ETKLHFLSL	9	Unmodified	_ETKLHFLSL_					0	0	0			REV__TET1|p.K1722Rfs*51|1|0.02|ENSG00000138336|chr10:68686467-68686468|-/GGCTTTCTCC|frameshift_variant	REV__TET1|p.K1722Rfs*51|1|0.02|ENSG00000138336|chr10:68686467-68686468|-/GGCTTTCTCC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.764892578125	2	544.310949	1086.60735	-0.41826	-0.00022767	-3.8266	-0.0020828	-4.2448	-0.0023105	544.3087669191814	47.92	0.52098	47.92	47.595	48.116	0					19	11	2	0	0	0	0.027462	1	3485	3485		42.396	12.078	1	867910	+		9818	19529	8033	8042	10696	10696					0.06750602511442594
ETKLKITQL	9	Unmodified	_ETKLKITQL_					0	0	0		ENST00000505896.5_1_5:49695109-49707239:-|nuORF;nc|ENSG00000170571|Q6PCB8-2|EMB;ENSG00000170571|ENST00000303221|EMB	ENST00000505896.5_1_5:49695109-49707239:-|nuORF	ENST00000505896.5_1_5:49695109-49707239:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	537.3309936523438	2	537.331882	1072.64921	-1.0995	-0.0005908	0.95094	0.00051097	-0.14856	-7.9828E-05	537.3322055841387	43.669	1.4419	43.669	43.353	44.795	0					79	32	4	0	0	0	0.11322	2	2893	2893;2905		93.598	15.334	1	1636600			9819	7118	8034	8043	10697;10698	10697					0.11579158199947415
ETKLLASEI	9	Unmodified	_ETKLLASEI_					0	0	0		ENSG00000104442|ENST00000276569|ARMC1;ENST00000506991.1_1_4:139402872-139402968:-|nuORF;ARMC1|p.Q177Sfs*18|1|0.17|ENSG00000104442|chr8:65605475-65605476|-/A|frameshift_variant	ENSG00000104442|ENST00000276569|ARMC1	ENSG00000104442|ENST00000276569|ARMC1	MULTI-MSMS	OvCa9_classI_Rep3	3	502.2882080078125	2	502.28714	1002.55973	-1.4406	-0.00072361	1.0515	0.00052816	-0.38912	-0.00019545	502.2875527369838	84.598	1.8708	82.337	81.974	83.845	-2.261					101	37	4	0	0	0	0.1243	1	4952	4952		90.601	2.8466	1	654570			9820	2377	8035	8044	10699	10699					0.05854903520571497
ETKPDNIII	9	Unmodified	_ETKPDNIII_					0	0	0		tr|A0A7D6VVP1|A0A7D6VVP1_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04180PE=4SV=1	tr|A0A7D6VVP1|A0A7D6VVP1_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04180PE=4SV=1	tr|A0A7D6VVP1|A0A7D6VVP1_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04180PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	521.7942504882812	2	521.792589	1041.57063	1.4589	0.00076122	0.73755	0.00038485	2.1964	0.0011461	521.7927436252154	128.74	0.74716	128.74	128.47	129.21	0					35	15	4	0	0	0	0.12515	1	14916	14916		90.37	2.6734	1	406590			9821	35229	8036	8045	10700	10700					0.0515030589485832
ETKRAKAR	8	Unmodified	_ETKRAKAR_					0	0	0			REV__ENSG00000149596|ENST00000372980|JPH2	REV__ENSG00000149596|ENST00000372980|JPH2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.28985595703125	2	480.290882	958.567212	-0.45701	-0.0002195	2.8259	0.0013573	2.3689	0.0011378	480.2920782504063	94.99	1.0012	92.522	91.86	92.861	-2.4685					32	19	2	0	0	0	0.028476	1	8324	8324		38.806	5.2906	1	24541	+		9822	20171	8037	8046	10701	10701					0.0862710063150871
ETKRALEEL	9	Unmodified	_ETKRALEEL_					0	0	0		ENSG00000100629|ENST00000555265|CEP128;nc|ENSG00000100629|Q6ZU80-3|CEP128;nc|ENSG00000100629|Q6ZU80-1|CEP128	ENSG00000100629|ENST00000555265|CEP128	ENSG00000100629|ENST00000555265|CEP128	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.8263549804688	2	544.800946	1087.58734	1.7593	0.00095848	4.0301	0.0021956	5.7895	0.0031541	544.8030083171697	117.28	0.70444	117.28	117.04	117.74	0					30	14	3	0	0	0	0.027462	1	13462	13462		32.812	3.6629	1	590180			9823	2093	8038	8047	10702	10702					0.04704806780796389
ETKREVEPYKL	11	Unmodified	_ETKREVEPYKL_					0	0	0		tr|A0A7D6VM28|A0A7D6VM28_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13665PE=4SV=1	tr|A0A7D6VM28|A0A7D6VM28_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13665PE=4SV=1	tr|A0A7D6VM28|A0A7D6VM28_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13665PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	464.2797546386719	3	464.589153	1390.74563	-1.0872	-0.00050512	-3.4702	-0.0016122	-4.5574	-0.0021173	464.92190531967054	82.924	0.50139	80.627	80.431	80.932	-2.2963					13	9	2	0	0	0	0.025508	1	4730	4730		41.08	0	1	20049			9824	34645	8039	8048	10703	10703					0.06588680969230154
ETKSIVELMAI	11	Unmodified	_ETKSIVELMAI_					0	0	0		BNC2|p.P607Afs*4|1|0.05|ENSG00000173068|chr9:16436376-16436377|-/G|frameshift_variant;nc|ENSG00000173068|Q6ZN30-2|BNC2;ENSG00000169594|ENST00000345382|BNC1;ENSG00000173068|ENST00000380672|BNC2	BNC2|p.P607Afs*4|1|0.05|ENSG00000173068|chr9:16436376-16436377|-/G|frameshift_variant	BNC2|p.P607Afs*4|1|0.05|ENSG00000173068|chr9:16436376-16436377|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	617.345703125	2	617.341589	1232.66863	1.5718	0.00097034	4.2934	0.0026505	5.8652	0.0036208	617.3441202371515	106.72	2.2943	105.46	104.9	107.2	-1.267					125	44	5	0	0	0	0.69308	1	7586	7586		16.717	0	1	1265400			9825	156	8040	8049	10704	10704					0.06159746428534163
ETKSLCNNKI	10	Unmodified	_ETKSLCNNKI_					0	0	0		L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|68|3|sense	L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|68|3|sense	L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|68|3|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.85205078125	2	575.300255	1148.58596	0.31648	0.00018207	3.2804	0.0018872	3.5969	0.0020693	575.3027815804102	89.634	0.54955	87.059	86.9	87.45	-2.575					12	10	2	0	0	0	0.026881	1	7692	7692		45.022	3.5956	1	33732			9826	14547	8041	8050	10705	10705					0.017608494203841474
ETKSNFSL	8	Unmodified	_ETKSNFSL_					0	0	0		tr|A0A553SS44|A0A553SS44_NIACIYafYfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02445PE=4SV=1	tr|A0A553SS44|A0A553SS44_NIACIYafYfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02445PE=4SV=1	tr|A0A553SS44|A0A553SS44_NIACIYafYfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02445PE=4SV=1	MSMS	OvCa9_classI_Rep4_	4	463.2355041503906	2	463.234907	924.455261	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.191	1	69.795	69.295	70.295	-3.3961								0	0	0	0.30129	1	5662	5662		71.296	2.811	1				9827	34331	8042	8051	10706	10706					-0.00998798236150833
ETKTDKTTDT	10	Unmodified	_ETKTDKTTDT_					0	0	0			REV__tr|A0A7D6W458|A0A7D6W458_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10965PE=4SV=1	REV__tr|A0A7D6W458|A0A7D6W458_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10965PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	569.2868041992188	2	570.274958	1138.53536	-0.38345	-0.00021867	-2.9946	-0.0017078	-3.3781	-0.0019264	570.7753404231748	103.86	0.26282	101.74	101.59	101.85	-2.1192					7	4	2	0	0	0	0.02663	1	9382	9382		51.193	0	1	7423.2	+		9828	31934	8043	8052	10707	10707					-0.02836401423633106
ETKTLRNRMI	10	Unmodified	_ETKTLRNRMI_					0	0	0		tr|A0A7D6ZW62|A0A7D6ZW62_9CLOTSmallribosomalsubunitproteinbS20OS=ClostridiumintestinaleOX=36845GN=rpsTPE=3SV=1	tr|A0A7D6ZW62|A0A7D6ZW62_9CLOTSmallribosomalsubunitproteinbS20OS=ClostridiumintestinaleOX=36845GN=rpsTPE=3SV=1	tr|A0A7D6ZW62|A0A7D6ZW62_9CLOTSmallribosomalsubunitproteinbS20OS=ClostridiumintestinaleOX=36845GN=rpsTPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	421.2402038574219	3	421.23969	1260.69724	-1.3523	-0.00056963	-1.0705	-0.00045093	-2.4228	-0.0010206	421.23922442716844	66.129	1.1714	62.639	62.369	63.541	-3.4902					79	23	4	0	0	0	0.65849	1	4803	4803		35.152	2.4015	1	620780			9829	35827	8044	8053	10708	10708					0.07731908848359126
ETKYIVKQIMD	11	Unmodified	_ETKYIVKQIMD_					0	0	0		tr|A0A553SJ24|A0A553SJ24_NIACIATPphosphoribosyltransferaseregulatorysubunitOS=NialliacirculansOX=1397GN=hisZPE=3SV=1	tr|A0A553SJ24|A0A553SJ24_NIACIATPphosphoribosyltransferaseregulatorysubunitOS=NialliacirculansOX=1397GN=hisZPE=3SV=1	tr|A0A553SJ24|A0A553SJ24_NIACIATPphosphoribosyltransferaseregulatorysubunitOS=NialliacirculansOX=1397GN=hisZPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.57928466796875	3	456.579489	1366.71664	0.035569	1.624E-05	2.4355	0.001112	2.471	0.0011282	456.58058235023054	21.709	1.5452	20.371	20.017	21.562	-1.3386					108	32	6	0	0	0	0.69424	1	309	309		31.634	6.5083	1	887710			9830	33456	8045	8054	10709	10709					0.04794820348593021
ETLAKSSLL	9	Unmodified	_ETLAKSSLL_					0	0	0		nc|ENSG00000214198|Q6P2S7-2|TTC41P;nc|ENSG00000214198|Q6P2S7|TTC41P;ENST00000551270.1_1_12:104237536-104277386:-|nuORF;ENST00000548527.5_2_12:104238192-104276310:-|nuORF	nc|ENSG00000214198|Q6P2S7-2|TTC41P	nc|ENSG00000214198|Q6P2S7-2|TTC41P	MULTI-MSMS	OvCa9_classI_Rep2	2	481.2828674316406	2	481.281857	960.549162	-0.81055	-0.0003901	1.8299	0.00088072	1.0194	0.00049061	481.28269787534566	57.799	2.0625	55.007	54.377	56.44	-2.7921					121	40	4	0	0	0	0.59259	1	4174	4174		32.812	4.9302	1	1037900			9831	15308	8046	8055	10710	10710					0.06730920866152701
ETLAQVRLPL	10	Unmodified	_ETLAQVRLPL_					0	0	0		ENSG00000145332|ENST00000273963|KLHL8;nc|ENSG00000145332|Q9P2G9-2|KLHL8	ENSG00000145332|ENST00000273963|KLHL8	ENSG00000145332|ENST00000273963|KLHL8	MULTI-MSMS	OvCa99_classI_Rep5	1	570.3405151367188	2	570.342781	1138.67101	-0.52466	-0.00029924	-1.707	-0.00097356	-2.2316	-0.0012728	570.3416740425909	24.661	0.45289	24.661	24.486	24.938	0					15	8	3	0	0	0	0.67931	1	474	474		32.812	4.9302	1	99147			9832	5215	8047	8056	10711	10711					0.10721962948514374
ETLARAKL	8	Unmodified	_ETLARAKL_					0	0	0			REV__nc|ENSG00000165533|Q8TAM2-6|TTC8	REV__nc|ENSG00000165533|Q8TAM2-6|TTC8	MULTI-MSMS	OvCa9_classI_Rep4_	4	451.2792053222656	2	451.276909	900.539266	0.95171	0.00042948	3.172	0.0014314	4.1237	0.0018609	451.27828212128196	112.17	1.7679	110.66	110.32	112.08	-1.5111					105	34	4	0	0	0	0.61436	1	10337	10337		60.972	9.6365	1	1261800	+		9833	21099	8048	8057	10712	10712					0.08501777651417797
ETLARRAGL	9	Unmodified	_ETLARRAGL_					0	0	0		tr|A0A553SNT3|A0A553SNT3_NIACIRibonucleaseYOS=NialliacirculansOX=1397GN=rnyPE=3SV=1	tr|A0A553SNT3|A0A553SNT3_NIACIRibonucleaseYOS=NialliacirculansOX=1397GN=rnyPE=3SV=1	tr|A0A553SNT3|A0A553SNT3_NIACIRibonucleaseYOS=NialliacirculansOX=1397GN=rnyPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	493.7916259765625	2	493.790715	985.566878	-0.45135	-0.00022287	0.071777	3.5443E-05	-0.37957	-0.00018743	493.79074461659474	35.451	1.1086	35.451	35.149	36.257	0					51	23	5	0	0	0	0.21231	1	1778	1778		74.255	5.4682	1	3259200			9834	33960	8049	8058	10713	10713					0.07351680911654057
ETLASFQAGL	10	Unmodified	_ETLASFQAGL_					0	0	0			REV__nc|ENSG00000149600|Q86VX2-2|COMMD7	REV__nc|ENSG00000149600|Q86VX2-2|COMMD7	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.77001953125	2	518.769114	1035.52368	-0.84698	-0.00043939	0.71291	0.00036984	-0.13407	-6.9553E-05	518.7693309592166	82.441	1.5097	79.758	79.298	80.808	-2.6829					83	30	4	0	0	0	0.42082	1	6825	6825		65.465	1.2581	1	876750	+		9835	28923	8050	8059	10714	10714					0.007334463437246086
ETLAWVVNN	9	Unmodified	_ETLAWVVNN_					0	0	0			REV__nc|ENSG00000196663|O15040-2|TECPR2	REV__nc|ENSG00000196663|O15040-2|TECPR2	MULTI-SECPEP	OvCa9_classI_Rep3	3	522.8070678710938	2	523.269281	1044.52401	-1.1778	-0.00061633	0.24779	0.00012966	-0.93005	-0.00048667	523.2687376555858	93.938	0.96875	91.976	91.526	92.495	-1.9617					22	18	2	0	0	0	0.027455	1	6074	6074		42.396	3.1433	1	36777	+		9836	22853	8051	8060	10715	10715					0.0035286606357658457
ETLCLANAIEI	11	Unmodified	_ETLCLANAIEI_					0	0	0			REV__nc|ENSG00000197757|P09630-2|HOXC6	REV__nc|ENSG00000197757|P09630-2|HOXC6	MSMS	OvCa99_classI_Rep5	1	595.3091430664062	2	595.310289	1188.60602	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.287	1	68.287	67.787	68.787	0								0	0	0	0.15522	1	6440	6440		54.722	5.1863	1		+		9837	17773	8052	8061	10716	10716					0.019266003603206627
ETLDKVFKP	9	Unmodified	_ETLDKVFKP_					0	0	0			REV__tr|A0A553SI47|A0A553SI47_NIACIPolyamineaminopropyltransferaseOS=NialliacirculansOX=1397GN=speEPE=3SV=1	REV__tr|A0A553SI47|A0A553SI47_NIACIPolyamineaminopropyltransferaseOS=NialliacirculansOX=1397GN=speEPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.2703857421875	2	538.802957	1075.59136	-0.32647	-0.0001759	-3.5037	-0.0018878	-3.8302	-0.0020637	538.8006123783159	47.825	0.47685	47.825	47.551	48.028	0					18	10	3	0	0	0	0.027462	1	3462	3462		25.574	0	1	238650	+		9838	29862	8053	8062	10717	10717					0.05658896274530889
ETLDRPRI	8	Unmodified	_ETLDRPRI_					0	0	0		ENST00000381800.3_1_12:12509649-12509894:-|nuORF	ENST00000381800.3_1_12:12509649-12509894:-|nuORF	ENST00000381800.3_1_12:12509649-12509894:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	499.7522888183594	2	500.282723	998.550893	-0.14543	-7.2755E-05	3.5673	0.0017847	3.4219	0.0017119	500.284333366767	96.689	1.3301	95.731	95.281	96.612	-0.95856					43	26	2	0	0	0	0.028476	1	8785	8785		51.335	8.861	1	43495			9839	11172	8054	8063	10718	10718					0.051559746747557256
ETLFPALI	8	Unmodified	_ETLFPALI_					0	0	0		nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1	nc|ENSG00000080815|P49768-3|PSEN1	nc|ENSG00000080815|P49768-3|PSEN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.7175598144531	2	452.262936	902.51132	0.023609	1.0678E-05	-4.4496	-0.0020124	-4.426	-0.0020017	452.2608291269512	70.732	1.703	67.251	66.589	68.292	-3.4812					61	34	2	0	0	0	0.028476	1	5330	5330		65.897	13.598	1	1076500			9840	1641	8055	8064	10719	10719					0.056164546713375785
ETLFPALI	8	Unmodified	_ETLFPALI_					0	0	0		nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1	nc|ENSG00000080815|P49768-3|PSEN1	nc|ENSG00000080815|P49768-3|PSEN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	452.262936	902.51132	1.8349	0.00082985	-6.3071	-0.0028525	-4.4722	-0.0020226	452.2600069484535	69.808	1.8068	67.238	66.515	68.322	-2.5707	0.079008	-0.00067566	NaN	65.897	57	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250670			9841	1641	8055	8064							0.056164546713375785
ETLFSIQLL	9	Unmodified	_ETLFSIQLL_					0	0	0		nc|ENSG00000186714|Q6ZRK6-2|CCDC73;ENSG00000186714|ENST00000335185|CCDC73	nc|ENSG00000186714|Q6ZRK6-2|CCDC73	nc|ENSG00000186714|Q6ZRK6-2|CCDC73	MULTI-MSMS	OvCa9_classI_Rep2	2	532.3056030273438	2	532.305332	1062.59611	-0.23952	-0.0001275	0.20176	0.0001074	-0.037759	-2.0099E-05	532.3052418962925	130.83	0.99458	130.6	130.3	131.3	-0.22697					45	19	3	0	0	0	0.37135	1	12894	12894		54.776	1.8396	1	123590			9842	8358	8056	8065	10720	10720					0.0673178041729443
ETLGLKQY	8	Unmodified	_ETLGLKQY_					0	0	0			REV__ENSG00000146112|ENST00000274853|PPP1R18	REV__ENSG00000146112|ENST00000274853|PPP1R18	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.2892150878906	2	476.260925	950.507297	-0.13203	-6.288E-05	0.080048	3.8124E-05	-0.051981	-2.4756E-05	476.26069257071475	95.878	0.5969	94.85	94.516	95.113	-1.0281					14	11	2	0	0	0	0.028476	1	8625	8625		30.504	5.0535	1	18478	+		9843	19995	8057	8066	10721	10721					0.030063651776117695
ETLKELGNI	9	Unmodified	_ETLKELGNI_					0	0	0			REV__tr|A0A553SNC7|A0A553SNC7_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_24120PE=4SV=1	REV__tr|A0A553SNC7|A0A553SNC7_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_24120PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.785888671875	2	508.784764	1015.55498	-0.50601	-0.00025745	-0.27633	-0.00014059	-0.78234	-0.00039804	508.78461024196775	67.921	1.2496	67.921	67.566	68.815	0					79	28	5	0	0	0	0.043101	1	6370	6370		124.08	9.4943	1	22094000	+		9844	30409	8058	8067	10722	10722					0.04782019377819324
ETLKISKEL	9	Unmodified	_ETLKISKEL_					0	0	0		tr|A0A7D6ZWF2|A0A7D6ZWF2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17600PE=4SV=1	tr|A0A7D6ZWF2|A0A7D6ZWF2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17600PE=4SV=1	tr|A0A7D6ZWF2|A0A7D6ZWF2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17600PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	530.8162841796875	2	530.816064	1059.61758	-0.32708	-0.00017362	-0.092068	-4.8871E-05	-0.41915	-0.00022249	530.8158679655988	49.003	0.96092	49.003	48.718	49.679	0					47	21	4	0	0	0	0.23241	1	3649	3649		70.816	5.3508	1	1607100			9845	35840	8059	8068	10723	10723					0.09015165445998718
ETLKKEKL	8	Unmodified	_ETLKKEKL_					0	0	0		nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	MULTI-MSMS	OvCa9_classI_Rep2	2	494.8040466308594	2	494.8055	987.596446	1.0393	0.00051424	-1.2999	-0.00064319	-0.2606	-0.00012895	494.80474753992246	65.191	2.4272	62.466	61.758	64.185	-2.7245					68	47	2	0	0	0	0.40148	1	4998	4998		87.754	0	1	377760			9846	6329	8060	8069	10724	10724					0.10215200137145075
ETLKKEKL	8	Unmodified	_ETLKKEKL_					0	0	0		nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.8056335449219	2	494.8055	987.596446	-0.82295	-0.0004072	0.5913	0.00029258	-0.23166	-0.00011462	494.8056547669	65.982	2.2518	62.497	61.84	64.092	-3.4854					69	45	2	0	0	0	0.57734	1	4772	4772		68.787	0	1	521860			9847	6329	8060	8069	10725	10725					0.10215200137145075
ETLKKQVAE	9	Unmodified	_ETLKKQVAE_					0	0	0		OGFOD1|p.Q73Pfs*2|1|0.03|ENSG00000087263|chr16:56453326-56453332|AAGACTT/-|frameshift_variant;ENST00000569645.1_1_16:56485524-56487341:+|nuORF;ENST00000563733.5_1_16:56485524-56492507:+|nuORF;ENST00000568172.1_1_16:56485524-56500079:+|nuORF;ENSG00000087263|ENST00000566157|OGFOD1	OGFOD1|p.Q73Pfs*2|1|0.03|ENSG00000087263|chr16:56453326-56453332|AAGACTT/-|frameshift_variant	OGFOD1|p.Q73Pfs*2|1|0.03|ENSG00000087263|chr16:56453326-56453332|AAGACTT/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	523.299072265625	2	523.298039	1044.58152	1.7069	0.00089324	0.31965	0.00016727	2.0266	0.0010605	523.2981318011693	95.309	2.0614	95.309	94.905	96.966	0					117	48	5	0	0	0	0.3076	1	10481	10481		62.107	1.1355	1	15533000			9848	1769	8061	8070	10726	10726					0.061017082691250835
ETLKREQS	8	Unmodified	_ETLKREQS_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.287353515625	2	495.764363	989.514173	-1.7134	-0.00084942	-4.3326	-0.0021479	-6.0459	-0.0029974	495.7620706681381	107.38	1.4014	105.5	105.01	106.41	-1.8785					54	27	3	0	0	0	0.028476	1	9903	9903		25.45	0	1	159950			9849	4035	8062	8071	10727	10727					0.018996780581915118
ETLKREQS	8	Unmodified	_ETLKREQS_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MATCH	OvCa9_classI_Rep2	2		2	495.764363	989.514173	-0.1192	-5.9093E-05	-6.0371	-0.002993	-6.1563	-0.0030521	495.7611751221031	105.72	1.1481	105.28	105	106.15	-0.43642	-0.12898	-0.00045289	NaN	12.207	50	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149920			9850	4035	8062	8071							0.018996780581915118
ETLKREQS	8	Unmodified	_ETLKREQS_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MATCH	OvCa9_classI_Rep3	3		2	495.764363	989.514173	0.29929	0.00014838	-6.1409	-0.0030444	-5.8416	-0.0028961	495.76112044745696	106.72	1.2986	105.45	105.01	106.31	-1.267	0.041259	-0.00055577	NaN	12.207	45	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213900			9851	4035	8062	8071							0.018996780581915118
ETLLKHEL	8	Unmodified	_ETLLKHEL_					0	0	0			REV__tr|A0A553SJV5|A0A553SJV5_NIACISeptationringformationregulatorEzrAOS=NialliacirculansOX=1397GN=ezrAPE=3SV=1	REV__tr|A0A553SJV5|A0A553SJV5_NIACISeptationringformationregulatorEzrAOS=NialliacirculansOX=1397GN=ezrAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	491.78369140625	2	491.782025	981.549496	1.063	0.00052277	1.0571	0.00051985	2.1201	0.0010426	491.7824558101613	83.485	1.5113	83.485	83.078	84.589	0					84	35	4	0	0	0	0.59148	1	8698	8698		65.803	0	1	8217800	+		9852	30047	8063	8072	10728	10728					0.057983405859772574
ETLLKHEL	8	Unmodified	_ETLLKHEL_					0	0	0			REV__tr|A0A553SJV5|A0A553SJV5_NIACISeptationringformationregulatorEzrAOS=NialliacirculansOX=1397GN=ezrAPE=3SV=1	REV__tr|A0A553SJV5|A0A553SJV5_NIACISeptationringformationregulatorEzrAOS=NialliacirculansOX=1397GN=ezrAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	491.7829284667969	2	491.782025	981.549496	1.5031	0.00073919	-1.8634	-0.00091637	-0.36029	-0.00017719	491.78083223671564	86.065	2.4404	83.419	82.993	85.434	-2.6463					136	48	5	0	0	0	0.56195	1	7280	7280		71.296	4.8664	1	1191800	+		9853	30047	8063	8072	10729	10729					0.057983405859772574
ETLLKTADL	9	Unmodified	_ETLLKTADL_					0	0	0			REV__ENSG00000198286|ENST00000396946|CARD11	REV__ENSG00000198286|ENST00000396946|CARD11	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.26531982421875	2	502.28714	1002.55973	-0.5429	-0.00027269	-4.1142	-0.0020665	-4.6571	-0.0023392	502.785042196693	59.851	0.50593	59.851	59.647	60.153	0					20	12	2	0	0	0	0.027392	1	5204	5204		85.359	21.152	1	253760	+		9854	23007	8064	8073	10730	10730					0.0585490352054876
ETLLRDVTD	9	Unmodified	_ETLLRDVTD_					0	0	0			REV__nc|ENSG00000139220|O75334-7|PPFIA2	REV__nc|ENSG00000139220|O75334-7|PPFIA2	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.2772216796875	2	531.277303	1060.54005	-0.046814	-2.4871E-05	-1.903	-0.001011	-1.9498	-0.0010359	531.2761980218208	86.656	1.3398	84.03	83.613	84.952	-2.6269					70	26	3	0	0	0	0.38969	1	7378	7378		52.937	3.4007	1	1610400	+		9855	19599	8065	8074	10731	10731					0.012205275098040147
ETLLRLFNQ	9	Unmodified	_ETLLRLFNQ_					0	0	0			REV__nc|ENSG00000120694|Q92598-2|HSPH1	REV__nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.322021484375	2	567.319306	1132.62406	-1.5919	-0.00090313	1.8841	0.0010689	0.29214	0.00016573	567.3204758129912	84.581	1.3452	83.034	82.745	84.091	-1.5462					89	26	5	0	0	0	0.22621	2	7350	7326;7350		71.877	8.5712	1	1915100	+		9856	18509	8066	8075	10732;10733	10733					0.06305103397380662
ETLLTVRLKD	10	Unmodified	_ETLLTVRLKD_					0	0	0		nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000023171|Q3KR37|GRAMD1B;nc|ENSG00000023171|Q3KR37-4|GRAMD1B;ENST00000532581.5_1_11:123431173-123490076:+|nuORF;ENSG00000023171|ENST00000635736|GRAMD1B	nc|ENSG00000023171|Q3KR37-2|GRAMD1B	nc|ENSG00000023171|Q3KR37-2|GRAMD1B	MULTI-MSMS	OvCa99_classI_Rep5	1	594.3516845703125	2	594.353345	1186.69214	1.0636	0.00063218	-3.8559	-0.0022917	-2.7922	-0.0016596	594.3509100676877	142.44	0.98456	142.44	142.04	143.02	0					50	19	4	0	0	0	0.45822	1	16630	16630		60.118	3.6845	1	406610			9857	1035	8067	8076	10734	10734					0.10625928257377382
ETLLYYISR	9	Unmodified	_ETLLYYISR_					0	0	0			REV__L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|76|2|sense	REV__L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|76|2|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.304443359375	2	579.313689	1156.61282	-0.89615	-0.00051915	0.32874	0.00019044	-0.56741	-0.00032871	579.3135901616397	87.081	1.855	84.454	84.054	85.909	-2.6269					79	36	4	0	0	0	0.33652	1	7389	7389		58.782	0.55203	1	327920	+		9858	28373	8068	8077	10735	10735					0.040782813032365084
ETLLYYISR	9	Unmodified	_ETLLYYISR_					0	0	0			REV__L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|76|2|sense	REV__L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|76|2|sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	579.313689	1156.61282	-1.347	-0.00078032	0.44428	0.00025738	-0.9027	-0.00052295	579.3136273383462	85.767	1.6339	84.276	83.9	85.534	-1.4906	-0.11915	-0.00065879	NaN	58.782	82	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279430	+		9859	28373	8068	8077							0.040782813032365084
ETLLYYISR	9	Unmodified	_ETLLYYISR_					0	0	0			REV__L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|76|2|sense	REV__L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|76|2|sense	MULTI-MATCH	OvCa9_classI_Rep3	3		2	579.313689	1156.61282	-1.9883	-0.0011519	1.7169	0.00099459	-0.27147	-0.00015727	579.3144687398532	86.632	1.9353	84.456	84.131	86.066	-2.1768	0.060459	0.00081565	NaN	58.782	94	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	424130	+		9860	28373	8068	8077							0.040782813032365084
ETLMDYHS	8	Unmodified	_ETLMDYHS_					0	0	0		tr|A0A553SKJ7|A0A553SKJ7_NIACIFructose-1,6-bisphosphataseclass3OS=NialliacirculansOX=1397GN=fbpPE=3SV=1	tr|A0A553SKJ7|A0A553SKJ7_NIACIFructose-1,6-bisphosphataseclass3OS=NialliacirculansOX=1397GN=fbpPE=3SV=1	tr|A0A553SKJ7|A0A553SKJ7_NIACIFructose-1,6-bisphosphataseclass3OS=NialliacirculansOX=1397GN=fbpPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.8129577636719	2	498.210575	994.406597	-0.19913	-9.921E-05	4.4564	0.0022202	4.2573	0.002121	498.2120237926286	108.6	0.76122	107.4	107.06	107.82	-1.1978					26	14	3	0	0	0	0.028476	1	7722	7722		12.207	0	1	22469			9861	33622	8069	8078	10736	10736					-0.09083034867546758
ETLNFKFN	8	Unmodified	_ETLNFKFN_					0	0	0			REV__ENSG00000155508|ENST00000285896|CNOT8	REV__ENSG00000155508|ENST00000285896|CNOT8	MULTI-MSMS	OvCa99_classI_Rep5	1	506.7575988769531	2	506.758549	1011.50255	1.0494	0.00053179	-3.404	-0.001725	-2.3546	-0.0011932	506.756812219355	156.25	1.162	156.25	155.73	156.9	0					36	22	2	0	0	0	0.66704	1	18322	18322		50.025	7.5501	1	136150	+		9862	20427	8070	8079	10737	10737					-0.002745189651477631
ETLNIVDLFT	10	Unmodified	_ETLNIVDLFT_					0	0	0		tr|A0A553SQ72|A0A553SQ72_NIACIClassISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_21955PE=4SV=1	tr|A0A553SQ72|A0A553SQ72_NIACIClassISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_21955PE=4SV=1	tr|A0A553SQ72|A0A553SQ72_NIACIClassISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_21955PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.8639526367188	2	582.810979	1163.6074	-1.1015	-0.00064194	2.0449	0.0011918	0.94346	0.00054986	582.8120159573863	37.257	0.78264	37.257	37.114	37.896	0					23	16	2	0	0	0	0.027056	1	2081	2081		20.947	4.2295	1	44071			9863	34126	8071	8080	10738	10738					0.03214557720730227
ETLNQSTEL	9	Unmodified	_ETLNQSTEL_					0	0	0		ENSG00000131864|ENST00000254181|USP29	ENSG00000131864|ENST00000254181|USP29	ENSG00000131864|ENST00000254181|USP29	MULTI-MSMS	OvCa99_classI_Rep5	1	517.7560424804688	2	517.753661	1033.49277	1.7466	0.00090432	1.7729	0.00091793	3.5195	0.0018222	517.7543981629316	98.706	1.4068	98.706	97.954	99.361	0					75	33	3	0	0	0	0.28934	1	10848	10848		64.207	0.901	1	7437800			9864	4094	8072	8081	10739	10739					-0.022637517611883595
ETLNQYRC	8	Unmodified	_ETLNQYRC_					0	0	0			REV__nc|ENSG00000100399|Q6NUI6-2|CHADL	REV__nc|ENSG00000100399|Q6NUI6-2|CHADL	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.3499755859375	2	513.737291	1025.46003	0.71105	0.00036529	2.0646	0.0010607	2.7757	0.001426	513.7380765853485	142.07	0.44966	142.07	141.69	142.14	0					9	8	2	0	0	0	0.028476	1	16605	16605		25.45	0	1	13344	+		9865	17412	8073	8082	10740	10740					-0.05168237365023742
ETLPSRRQII	10	Unmodified	_ETLPSRRQII_					0	0	0		tr|A0A553SST3|A0A553SST3_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03620PE=4SV=1	tr|A0A553SST3|A0A553SST3_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03620PE=4SV=1	tr|A0A553SST3|A0A553SST3_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03620PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	606.859619140625	2	606.856586	1211.69862	1.4885	0.0009033	3.9918	0.0024225	5.4803	0.0033258	606.8588785334784	111.49	0.76495	111.49	111.07	111.83	0					28	16	2	0	0	0	0.52162	1	12692	12692		31.53	0	1	399490			9866	34414	8074	8083	10741	10741					0.10123866208755317
ETLQESNGNL	10	Unmodified	_ETLQESNGNL_					0	0	0		ENSG00000038295|ENST00000061240|TLL1;nc|ENSG00000038295|O43897-2|TLL1	ENSG00000038295|ENST00000061240|TLL1	ENSG00000038295|ENST00000061240|TLL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.2687377929688	2	552.762017	1103.50948	-0.12571	-6.9488E-05	-0.57628	-0.00031854	-0.70199	-0.00038803	552.7617029726371	74.724	0.86887	71.494	71.24	72.109	-3.2308					23	17	2	0	0	0	0.026843	1	5901	5901		46.457	9.2977	1	47454			9867	1096	8075	8084	10742	10742					-0.0381325087521418
ETLQGLLKQV	10	Unmodified	_ETLQGLLKQV_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5;SPTBN5|p.W1154Cfs*31|1|0.18|ENSG00000137877|chr15:41878350-41878351|-/TA|frameshift_variant	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.2973022460938	2	564.834788	1127.65502	0.67454	0.000381	-1.4151	-0.0007993	-0.74057	-0.0004183	564.8337606078131	104.31	0.94196	102.19	101.96	102.9	-2.1192					39	17	3	0	0	0	0.027117	1	9515	9515		21.686	4.2177	1	148180			9868	4634	8076	8085	10743	10743					0.0963025671160267
ETLQGLLKQV	10	Unmodified	_ETLQGLLKQV_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5;SPTBN5|p.W1154Cfs*31|1|0.18|ENSG00000137877|chr15:41878350-41878351|-/TA|frameshift_variant	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	564.834788	1127.65502	-0.80755	-0.00045613	-0.28112	-0.00015879	-1.0887	-0.00061492	564.8344146718183	102.9	1.0358	102.21	101.98	103.02	-0.68459	0.01073	0.00091206	NaN	28.081	44	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106320			9869	4634	8076	8085							0.0963025671160267
ETLQGLLKQV	10	Unmodified	_ETLQGLLKQV_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5;SPTBN5|p.W1154Cfs*31|1|0.18|ENSG00000137877|chr15:41878350-41878351|-/TA|frameshift_variant	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	564.834788	1127.65502	-0.036202	-2.0448E-05	-1.1251	-0.0006355	-1.1613	-0.00065595	564.8339008818791	103.65	0.99542	102.21	101.97	102.97	-1.4347	0.0065999	-4.1362E-05	NaN	28.081	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142400			9870	4634	8076	8085							0.0963025671160267
ETLRSGEL	8	Unmodified	_ETLRSGEL_					0	0	0		nc|ENSG00000143624|Q68E01-3|INTS3;ENSG00000143624|ENST00000318967|INTS3;nc|ENSG00000143624|Q68E01|INTS3;nc|ENSG00000143624|Q68E01-4|INTS3	nc|ENSG00000143624|Q68E01-3|INTS3	nc|ENSG00000143624|Q68E01-3|INTS3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.7175598144531	2	452.740357	903.46616	-0.052379	-2.3714E-05	-0.59069	-0.00026743	-0.64307	-0.00029114	452.74028026749033	70.095	1.0193	66.614	66.442	67.461	-3.4812					28	20	2	0	0	0	0.012394	1	5330	5330		128.86	26.088	1	79809			9871	5079	8077	8086	10744	10744					0.010566041381480318
ETLRWRKRWRW	11	Unmodified	_ETLRWRKRWRW_					0	0	0		ENST00000507209.5_1_4:187125362-187125452:+|nuORF	ENST00000507209.5_1_4:187125362-187125452:+|nuORF	ENST00000507209.5_1_4:187125362-187125452:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.8931579589844	4	418.987838	1671.92225	0.31299	0.00013114	-2.8682	-0.0012018	-2.5553	-0.0010706	419.2373150156769	30.538	0.64488	30.538	30.086	30.731	0					19	12	2	0	0	0	0.026431	1	1195	1195		7.6794	0	1	55107			9872	12924	8078	8087	10745	10745					0.11316199433531438
ETLSKGETPET	11	Unmodified	_ETLSKGETPET_					0	0	0		nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.8037109375	2	596.290608	1190.56666	2.7038	0.0016122	3.7673	0.0022464	6.4711	0.0038587	596.2927416540986	75.465	1.0287	75.465	75.209	76.238	0					37	25	3	0	0	0	0.025457	1	7573	7573		44.377	5.1244	1	445290			9873	7235	8079	8088	10746	10746					-0.020998283895096392
ETLSRELD	8	Unmodified	_ETLSRELD_					0	0	0			REV__PCNT|p.A2734Qfs*36|1|0.3|ENSG00000160299|chr21:46431663-46431664|-/CAGAA|frameshift_variant	REV__PCNT|p.A2734Qfs*36|1|0.3|ENSG00000160299|chr21:46431663-46431664|-/CAGAA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.77130126953125	2	481.743096	961.47164	-0.54945	-0.00026469	1.0912	0.00052566	0.54171	0.00026097	481.7435176765217	35.173	0.24144	35.173	35.004	35.246	0					7	4	2	0	0	0	0.028476	1	1740	1740		42.396	13.247	1	158230	+		9874	20654	8080	8089	10747	10747					-0.010637170700420029
ETLSRELD	8	Unmodified	_ETLSRELD_					0	0	0			REV__PCNT|p.A2734Qfs*36|1|0.3|ENSG00000160299|chr21:46431663-46431664|-/CAGAA|frameshift_variant	REV__PCNT|p.A2734Qfs*36|1|0.3|ENSG00000160299|chr21:46431663-46431664|-/CAGAA|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	481.743096	961.47164	0.62089	0.00029911	3.8453	0.0018525	4.4662	0.0021516	481.74448761792485	37.674	0.44935	34.782	34.641	35.09	-2.8925	-0.19558	0.0015311	NaN	47.657	9	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5697.1	+		9875	20654	8080	8089							-0.010637170700420029
ETLVEEAPTL	10	Unmodified	_ETLVEEAPTL_					0	0	0			REV__ENST00000561566.1_1_16:68894085-68896991:+|nuORF	REV__ENST00000561566.1_1_16:68894085-68896991:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	550.3357543945312	2	551.287337	1100.56012	1.1112	0.00061258	1.286	0.00070897	2.3972	0.0013216	551.287613221421	66.507	0.944	63.811	63.17	64.114	-2.6958					29	18	2	0	0	0	0.026635	1	5189	5189		47.657	6.8792	1	15033	+		9876	17593	8081	8090	10748	10748					0.013862784497632674
ETLVEEAPTL	10	Unmodified	_ETLVEEAPTL_					0	0	0			REV__ENST00000561566.1_1_16:68894085-68896991:+|nuORF	REV__ENST00000561566.1_1_16:68894085-68896991:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	551.287337	1100.56012	0.50665	0.00027931	4.6105	0.0025417	5.1171	0.002821	551.2893637786225	66.897	0.91028	64.009	63.729	64.639	-2.8873	0.099097	0.0019529	NaN	47.657	20	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8896.9	+		9877	17593	8081	8090							0.013862784497632674
ETLVKIQNH	9	Unmodified	_ETLVKIQNH_					0	0	0			REV__ENSG00000128606|ENST00000339431|LRRC17	REV__ENSG00000128606|ENST00000339431|LRRC17	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.2666625976562	2	541.303655	1080.59276	-0.97549	-0.00052803	0.11128	6.0234E-05	-0.86421	-0.0004678	541.3035335863918	77.28	1.0197	74.464	74.244	75.263	-2.8165					29	20	2	0	0	0	0.027453	1	6189	6189		30.318	0	1	41953	+		9878	18864	8082	8091	10749	10749					0.055685303633026706
ETLVMPTLR	9	Unmodified	_ETLVMPTLR_					0	0	0		nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;nc|ENSG00000137713|P30154-5|PPP2R1B	nc|ENSG00000137713|P30154-4|PPP2R1B	nc|ENSG00000137713|P30154-4|PPP2R1B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.2757568359375	2	530.296985	1058.57942	0.42165	0.0002236	3.8923	0.0020641	4.3139	0.0022877	530.2985329866948	86.365	0.39276	83.738	83.613	84.005	-2.6269					10	7	2	0	0	0	0.027462	1	7327	7327		17.468	0	1	140910			9879	4608	8083	8092	10750	10750					0.052469562596797914
ETLVSGTQL	9	Unmodified	_ETLVSGTQL_					0	0	0		NEO1|p.G1147Afs*12|1|0.06|ENSG00000067141|chr15:73288341-73288341|G/-|frameshift_variant;nc|ENSG00000067141|Q92859-3|NEO1;nc|ENSG00000067141|Q92859-2|NEO1;nc|ENSG00000067141|Q92859-4|NEO1;ENSG00000067141|ENST00000261908|NEO1	NEO1|p.G1147Afs*12|1|0.06|ENSG00000067141|chr15:73288341-73288341|G/-|frameshift_variant	NEO1|p.G1147Afs*12|1|0.06|ENSG00000067141|chr15:73288341-73288341|G/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	474.2572326660156	2	474.25584	946.497126	2.2554	0.0010696	0.20429	9.6885E-05	2.4597	0.0011665	474.25578520526454	77.257	1.2526	77.257	76.841	78.093	0					48	29	3	0	0	0	0.16562	1	7782	7782		82.241	0	1	2047400			9880	1367	8084	8093	10751	10751					0.021737574523854164
ETLVSGTQL	9	Unmodified	_ETLVSGTQL_					0	0	0		NEO1|p.G1147Afs*12|1|0.06|ENSG00000067141|chr15:73288341-73288341|G/-|frameshift_variant;nc|ENSG00000067141|Q92859-3|NEO1;nc|ENSG00000067141|Q92859-2|NEO1;nc|ENSG00000067141|Q92859-4|NEO1;ENSG00000067141|ENST00000261908|NEO1	NEO1|p.G1147Afs*12|1|0.06|ENSG00000067141|chr15:73288341-73288341|G/-|frameshift_variant	NEO1|p.G1147Afs*12|1|0.06|ENSG00000067141|chr15:73288341-73288341|G/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	474.25584	946.497126	0.11372	5.3933E-05	5.0817	0.00241	5.1954	0.0024639	474.2560104860856	79.81	0.33543	77.058	76.844	77.179	-2.7514	-0.099249	0.0043069	NaN	82.241	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21587			9881	1367	8084	8093							0.021737574523854164
ETMLRPFF	8	Unmodified	_ETMLRPFF_					0	0	0			REV__ENSG00000156162|ENST00000414645|DPY19L4	REV__ENSG00000156162|ENST00000414645|DPY19L4	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.7318725585938	2	520.76532	1039.51609	0.22374	0.00011652	1.0857	0.00056537	1.3094	0.00068189	520.7644155711494	152.11	0.33289	152.11	151.97	152.31	0					9	6	2	0	0	0	0.028476	1	17824	17824		17.365	0	1	23715	+		9882	20463	8085	8094	10752	10752					-0.002089844575493771
ETMLSVSEQVS	11	Unmodified	_ETMLSVSEQVS_					0	0	0		ENSG00000268235|ENST00000622971|TCP11X1;ENSG00000215029|ENST00000642911|TCP11X2	ENSG00000268235|ENST00000622971|TCP11X1	ENSG00000268235|ENST00000622971|TCP11X1	MULTI-SECPEP	OvCa99_classI_Rep5	1	605.81787109375	2	605.287011	1208.55947	2.3841	0.0014431	-2.0929	-0.0012668	0.29125	0.00017629	605.2855417416375	91.596	2.2471	91.596	91.016	93.263	0					127	53	3	0	0	0	0.025265	1	9898	9898		51.193	10.415	1	8062800			9883	9198	8086	8095	10753	10753					-0.03646884261570449
ETNDQRSSL	9	Unmodified	_ETNDQRSSL_					0	0	0			REV__ENSG00000104643|ENST00000221086|MTMR9	REV__ENSG00000104643|ENST00000221086|MTMR9	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2865600585938	2	525.246535	1048.47852	-0.54091	-0.00028411	2.2809	0.001198	1.74	0.00091393	525.2474691005408	68.945	2.1608	68.945	67.723	69.883	0					72	52	2	0	0	0	0.027462	1	6595	6595		15.642	7.9515	1	465540	+		9884	17672	8087	8096	10754	10754					-0.0437840418946962
ETNEPFVPE	9	Unmodified	_ETNEPFVPE_					0	0	0			REV__nc|ENSG00000134900|P29144|TPP2	REV__nc|ENSG00000134900|P29144|TPP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.8173217773438	2	531.242929	1060.47131	-0.3464	-0.00018402	-3.5565	-0.0018893	-3.9029	-0.0020734	531.2410429959793	49.085	0.83192	49.085	48.63	49.462	0					33	18	2	0	0	0	0.027403	1	3622	3622		82.75	27.974	1	333160	+		9885	19242	8088	8097	10755	10755					-0.056511367899020115
ETNFVISPA	9	Unmodified	_ETNFVISPA_					0	0	0		ENSG00000253309|ENST00000681248|SERPINE3;nc|ENSG00000253309|A8MV23|SERPINE3	ENSG00000253309|ENST00000681248|SERPINE3	ENSG00000253309|ENST00000681248|SERPINE3	MULTI-MSMS	OvCa99_classI_Rep5	1	489.24932861328125	2	489.250557	976.486562	-0.62382	-0.00030521	-4.3551	-0.0021307	-4.9789	-0.0024359	489.24866015695807	54.916	0.96942	54.916	54.59	55.559	0					53	22	5	0	0	0	0.40667	1	4483	4483		51.335	1.3109	1	3021600			9886	9429	8089	8098	10756	10756					-0.00262225202038735
ETNIGEKLL	9	Unmodified	_ETNIGEKLL_					0	0	0		tr|A0A553SKJ7|A0A553SKJ7_NIACIFructose-1,6-bisphosphataseclass3OS=NialliacirculansOX=1397GN=fbpPE=3SV=1	tr|A0A553SKJ7|A0A553SKJ7_NIACIFructose-1,6-bisphosphataseclass3OS=NialliacirculansOX=1397GN=fbpPE=3SV=1	tr|A0A553SKJ7|A0A553SKJ7_NIACIFructose-1,6-bisphosphataseclass3OS=NialliacirculansOX=1397GN=fbpPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.78643798828125	2	508.784764	1015.55498	3.8004	0.0019336	-2.3614	-0.0012015	1.4389	0.00073211	508.78347013024205	88.267	0.5486	88.267	88.003	88.551	0					21	12	2	0	0	0	0.46356	1	9378	9378		45.972	0.020292	1	2052800			9887	33622	8090	8099	10757	10757					0.04782019377819324
ETNLFIEMV	9	Unmodified	_ETNLFIEMV_					0	0	0		tr|A0A553SRI0|A0A553SRI0_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_01075PE=3SV=1	tr|A0A553SRI0|A0A553SRI0_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_01075PE=3SV=1	tr|A0A553SRI0|A0A553SRI0_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_01075PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.2738647460938	2	548.273175	1094.5318	-1.3146	-0.00072079	1.421	0.00077912	0.10639	5.8333E-05	548.2738008340743	43.251	1.3847	40.243	39.853	41.238	-3.0074					59	26	3	0	0	0	0.55588	1	2073	2073		37.159	2.9866	1	469700			9888	34265	8091	8100	10758	10758					-0.011687427311699139
ETNPLIIVF	9	Unmodified	_ETNPLIIVF_					0	0	0			REV__tr|A0A7D6VNR6|A0A7D6VNR6_9CLOTGGDEFdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14050PE=4SV=1	REV__tr|A0A7D6VNR6|A0A7D6VNR6_9CLOTGGDEFdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14050PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.2691650390625	2	523.30005	1044.58555	-0.12174	-6.3708E-05	-3.8651	-0.0020226	-3.9869	-0.0020863	523.2979368978242	68.529	1.1327	65.039	64.769	65.901	-3.4902					57	22	5	0	0	0	0.027462	1	5180	5180		35.618	0	1	393050	+		9889	31202	8092	8101	10759	10759					0.0650379776286627
ETPHVDPNTTK	11	Unmodified	_ETPHVDPNTTK_					0	0	0			REV__nc|ENSG00000164830|Q8N573-3|OXR1	REV__nc|ENSG00000164830|Q8N573-3|OXR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	413.895263671875	3	413.53857	1237.59388	0.070722	2.9246E-05	0.8206	0.00033935	0.89132	0.00036859	413.5387263256029	36.374	0.3215	36.374	36.211	36.532	0					10	6	2	0	0	0	0.025528	1	1927	1927		10.562	0	1	48448	+		9890	16103	8093	8102	10760	10760					-0.015413000584885594
ETPIIAHHDS	10	Unmodified	_ETPIIAHHDS_					0	0	0			REV__tr|A0A553SGE1|A0A553SGE1_NIACIDNAtopoisomeraseOS=NialliacirculansOX=1397GN=CEQ21_10660PE=3SV=1	REV__tr|A0A553SGE1|A0A553SGE1_NIACIDNAtopoisomeraseOS=NialliacirculansOX=1397GN=CEQ21_10660PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	560.8030395507812	2	560.275095	1118.53564	3.8397	0.0021513	1.2009	0.00067282	5.0406	0.0028241	560.2753752161304	130.58	0.73564	129.1	128.81	129.55	-1.478					23	14	2	0	0	0	0.026891	1	12569	12569		31.53	5.9558	1	46273	+		9891	29691	8094	8103	10761	10761					-0.01888936913087491
ETPIMLPPV	9	Unmodified	_ETPIMLPPV_					0	0	0			REV__nc|ENSG00000196116|Q8NHU6-2|TDRD7	REV__nc|ENSG00000196116|Q8NHU6-2|TDRD7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.25970458984375	2	498.775354	995.536154	-0.94022	-0.00046896	-0.52607	-0.00026239	-1.4663	-0.00073135	498.7723084842156	89.092	0.88713	86.489	86.085	86.972	-2.6027					29	17	3	0	0	0	0.027462	1	7677	7677		26.796	8.4717	1	24497	+		9892	22784	8095	8104	10762	10762					0.038207664823971754
ETPKKKKKRF	10	Unmodified	_ETPKKKKKRF_					0	0	0		ENSG00000277443|ENST00000612661|MARCKS	ENSG00000277443|ENST00000612661|MARCKS	ENSG00000277443|ENST00000612661|MARCKS	MULTI-MSMS	OvCa99_classI_Rep5	1	645.4067993164062	2	645.406247	1288.79794	0.36161	0.00023339	-0.20973	-0.00013536	0.15188	9.8025E-05	645.4059355846258	20.95	0.27756	20.95	20.823	21.101	0					10	5	3	0	0	0	0.62299	1	71	71		39.253	10.083	1	69694			9893	9584	8096	8105	10763	10763					0.1650930889350093
ETPPGRCCRC	10	Unmodified	_ETPPGRCCRC_					0	0	0		nc|ENSG00000168539|P11229-2|CHRM1;ENSG00000168539|ENST00000306960|CHRM1	nc|ENSG00000168539|P11229-2|CHRM1	nc|ENSG00000168539|P11229-2|CHRM1	MULTI-MSMS	OvCa99_classI_Rep5	1	561.2373657226562	2	561.236078	1120.4576	1.7163	0.00096326	-0.54416	-0.0003054	1.1722	0.00065785	561.2355680652096	123.63	0.77516	123.63	123.33	124.1	0					33	16	3	0	0	0	0.70152	1	14241	14241		30.318	1.1477	1	508430			9894	6919	8097	8106	10764	10764					-0.09780732365993572
ETPRQTPLLKG	11	Unmodified	_ETPRQTPLLKG_					0	0	0		DGKK|p.N1110Cfs*6|1|0.17|ENSG00000274588|chrX:50376111-50376112|-/ACAG|frameshift_variant;ENSG00000274588|ENST00000611977|DGKK	DGKK|p.N1110Cfs*6|1|0.17|ENSG00000274588|chrX:50376111-50376112|-/ACAG|frameshift_variant	DGKK|p.N1110Cfs*6|1|0.17|ENSG00000274588|chrX:50376111-50376112|-/ACAG|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	620.3585815429688	2	620.356419	1238.69829	-0.097204	-6.0301E-05	-0.0071655	-4.4452E-06	-0.10437	-6.4746E-05	620.3563887853736	57.473	0.84811	57.473	57.221	58.069	0					52	19	4	0	0	0	0.63561	1	4822	4822		41.427	3.6151	1	4653700			9895	733	8098	8107	10765	10765					0.08848446488900663
ETPRRVPLL	9	Unmodified	_ETPRRVPLL_					0	0	0		nc|ENSG00000139182|Q9BQT9-3|CLSTN3;ENST00000331148.5_1_12:7308690-7310592:+|nuORF	nc|ENSG00000139182|Q9BQT9-3|CLSTN3	nc|ENSG00000139182|Q9BQT9-3|CLSTN3	MULTI-MSMS	OvCa9_classI_Rep2	2	540.8309936523438	2	540.82984	1079.64513	-0.46856	-0.00025341	3.3565	0.0018153	2.8879	0.0015619	540.8317360682152	123.45	3.5017	123.21	122.89	126.4	-0.23193					177	70	5	0	0	0	0.56889	1	11973	11973		35.618	1.4457	1	7794400			9896	10444	8099	8108	10766	10766					0.10849113496919927
ETPRYGILS	9	Unmodified	_ETPRYGILS_					0	0	0			REV__ENSG00000027697|ENST00000367739|IFNGR1	REV__ENSG00000027697|ENST00000367739|IFNGR1	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.7537841796875	2	518.277106	1034.53966	-0.014832	-7.6872E-06	-3.7369	-0.0019367	-3.7517	-0.0019444	518.2747514861118	99.855	0.26357	98.17	97.985	98.248	-1.685					7	4	2	0	0	0	0.027441	1	6722	6722		40.778	0	1	6741.3	+		9897	16575	8100	8109	10767	10767					0.023771525806296268
ETPVYVNLYL	10	Unmodified	_ETPVYVNLYL_					0	0	0			REV__nc|ENSG00000196338|Q9NZ94-3|NLGN3	REV__nc|ENSG00000196338|Q9NZ94-3|NLGN3	MULTI-MSMS	OvCa99_classI_Rep5	1	404.2191162109375	3	404.216657	1209.62814	3.2514	0.0013143	2.6809	0.0010837	5.9324	0.002398	404.2178648039015	90.477	4.4615	90.477	90.186	94.648	0					287	107	5	0	0	0	0.63752	1	9865	9865		37.508	0.34906	1	88373000	+		9898	22812	8101	8110	10768	10768					0.031711481004322195
ETQHLDQL	8	Unmodified	_ETQHLDQL_					0	0	0		nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2;XIRP2|p.K632*|1|0.42|ENSG00000163092|chr2:167243810-167243826|TAAGGCAAAGTGGTTAT/-|frameshift_variant	nc|ENSG00000163092|A4UGR9-2|XIRP2	nc|ENSG00000163092|A4UGR9-2|XIRP2	MULTI-MSMS	OvCa99_classI_Rep5	1	492.2456359863281	2	492.243264	982.471974	-0.29024	-0.00014287	1.3467	0.0006629	1.0564	0.00052003	492.2433042914145	58.629	1.0438	58.629	58.112	59.156	0					65	25	4	0	0	0	0.61436	1	4957	4957		60.972	3.1607	1	4440200			9899	6265	8102	8111	10769	10769					-0.019962973501833403
ETQIVAVFF	9	Unmodified	_ETQIVAVFF_					0	0	0			REV__nc|ENSG00000070718|P53677-2|AP3M2	REV__nc|ENSG00000070718|P53677-2|AP3M2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.8165283203125	2	527.2844	1052.55425	-1.2845	-0.00067731	-2.8042	-0.0014786	-4.0887	-0.0021559	527.2827787058854	106.16	1.1333	104.15	103.79	104.93	-2.0161					36	21	2	0	0	0	0.027462	1	9675	9675		45.952	3.4775	1	104340	+		9900	16886	8103	8112	10770	10770					0.030072247287534992
ETQLLFDNI	9	Unmodified	_ETQLLFDNI_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7;nc|ENSG00000118997|Q8WXX0-2|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-MSMS	OvCa9_classI_Rep3	3	546.7807006835938	2	546.782222	1091.54989	-0.36544	-0.00019982	0.32127	0.00017567	-0.04417	-2.4151E-05	546.7822304801582	131.49	1.0801	130.37	130.06	131.14	-1.1249					48	21	4	0	0	0	0.48047	1	10470	10470		44.377	0	1	61799			9901	3337	8104	8113	10771	10771					0.007777155151870829
ETQMCYASLD	10	Unmodified	_ETQMCYASLD_					0	0	0		ENSG00000163519|ENST00000295756|TRAT1	ENSG00000163519|ENST00000295756|TRAT1	ENSG00000163519|ENST00000295756|TRAT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.798583984375	2	580.733557	1159.45256	2.198	0.0012764	0.46702	0.00027121	2.665	0.0015476	580.7337304622976	96.086	0.38279	96.086	95.913	96.296	0					14	8	2	0	0	0	0.027145	1	10499	10499		12.812	2.5465	1	178790			9902	6320	8105	8114	10772	10772					-0.12078757747622149
ETQVLGLLIFE	11	Unmodified	_ETQVLGLLIFE_					0	0	0			REV__chr17:3278923-3279076|92|12.34|0.29|5.41|-|ENST00000576166|OR3A2,OR3A2	REV__chr17:3278923-3279076|92|12.34|0.29|5.41|-|ENST00000576166|OR3A2,OR3A2	MULTI-MSMS	OvCa9_classI_Rep2	2	421.2377014160156	3	421.239461	1260.69655	1.072	0.00045156	-2.9276	-0.0012332	-1.8557	-0.00078168	421.2381678760703	65.257	1.3105	62.533	62.128	63.439	-2.7245					80	25	4	0	0	0	0.68059	1	5015	5015		36.318	4.7878	1	467360	+		9903	15941	8106	8115	10773	10773					0.07663392680274228
ETQVPPFGP	9	Unmodified	_ETQVPPFGP_					0	0	0			REV__chr7:99376574-99385702|86|17.84|0.29|5.95|+|2|ARPC1B,ARPC1B|1	REV__chr7:99376574-99385702|86|17.84|0.29|5.95|+|2|ARPC1B,ARPC1B|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	485.8052673339844	2	486.245275	970.475997	-0.72475	-0.00035241	-0.075203	-3.6567E-05	-0.79996	-0.00038897	486.24521322231755	56.401	0.59498	53.597	53.275	53.87	-2.804					18	11	2	0	0	0	0.027462	1	3949	3949		29.15	10.825	1	47533	+		9904	16102	8107	8116	10774	10774					-0.010422078564715775
ETRAFGALE	9	Unmodified	_ETRAFGALE_					0	0	0			REV__ENSG00000183960|ENST00000328405|KCNH8	REV__ENSG00000183960|ENST00000328405|KCNH8	MULTI-MSMS	OvCa9_classI_Rep2	2	497.2541809082031	2	497.253631	992.49271	-0.63304	-0.00031478	2.3454	0.0011662	1.7123	0.00085146	497.2538520224861	76.605	2.301	74.751	74.149	76.45	-1.854					113	43	4	0	0	0	0.1944	1	6349	6349		77.318	11.514	1	560020	+		9905	22395	8108	8117	10775	10775					-0.0038370697051277602
ETRAFGALE	9	Unmodified	_ETRAFGALE_					0	0	0			REV__ENSG00000183960|ENST00000328405|KCNH8	REV__ENSG00000183960|ENST00000328405|KCNH8	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.2551574707031	2	497.253631	992.49271	-0.32498	-0.0001616	0.29852	0.00014844	-0.026461	-1.3158E-05	497.25375497628926	77.521	2.2937	74.705	74.391	76.685	-2.8165					83	47	2	0	0	0	0.1243	3	6224	6212;6224;6237		90.601	8.672	1	1652300	+		9906	22395	8108	8117	10776;10777;10778	10777					-0.0038370697051277602
ETRALTPI	8	Unmodified	_ETRALTPI_					0	0	0			REV__ENSG00000196739|ENST00000356083|COL27A1	REV__ENSG00000196739|ENST00000356083|COL27A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.7613830566406	2	450.761092	899.507631	0.73636	0.00033192	-0.85627	-0.00038597	-0.11991	-5.4049E-05	450.7605170405177	142.66	0.79482	141.21	140.94	141.73	-1.4427					25	15	2	0	0	0	0.75241	1	13958	13958		25.45	0	1	35336	+		9907	22861	8109	8118	10779	10779					0.053857848974644185
ETRALTPI	8	Unmodified	_ETRALTPI_					0	0	0			REV__ENSG00000196739|ENST00000356083|COL27A1	REV__ENSG00000196739|ENST00000356083|COL27A1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	450.761092	899.507631	1.0115	0.00045593	-1.3009	-0.00058637	-0.2894	-0.00013045	450.76028555132854	141.44	0.64595	141.21	140.97	141.62	-0.22696	0.0049325	-0.00098392	NaN	25.45	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23208	+		9908	22861	8109	8118							0.053857848974644185
ETRALTPI	8	Unmodified	_ETRALTPI_					0	0	0			REV__ENSG00000196739|ENST00000356083|COL27A1	REV__ENSG00000196739|ENST00000356083|COL27A1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	450.761092	899.507631	-2.3605	-0.001064	1.9641	0.00088536	-0.39634	-0.00017865	450.76181683713816	142.2	0.49664	141.19	140.93	141.43	-1.0106	-0.013995	0.0019595	NaN	25.45	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18911	+		9909	22861	8109	8118							0.053857848974644185
ETRALTPI	8	Unmodified	_ETRALTPI_					0	0	0			REV__ENSG00000196739|ENST00000356083|COL27A1	REV__ENSG00000196739|ENST00000356083|COL27A1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	450.761092	899.507631	0.73636	0.00033192	-0.85627	-0.00038597	-0.11991	-5.4049E-05	450.7605170405177	142.66	0.79482	141.21	140.94	141.73	-1.4427	0.0090624	-0.00058312	NaN	25.45	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35336	+		9910	22861	8109	8118							0.053857848974644185
ETRERWKRRR	10	Unmodified	_ETRERWKRRR_					0	0	0		ENST00000326402.8_2_11:92930946-92931072:-|nuORF	ENST00000326402.8_2_11:92930946-92931072:-|nuORF	ENST00000326402.8_2_11:92930946-92931072:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.923095703125	3	491.61503	1471.82326	-0.45245	-0.00022243	4.0842	0.0020078	3.6317	0.0017854	491.6170694110817	61.966	0.37957	61.966	61.743	62.122	0					20	8	3	0	0	0	0.027062	1	5502	5502		12.433	0	1	337150			9911	10408	8110	8119	10780	10780					0.10622176468609723
ETREVHHF	8	Unmodified	_ETREVHHF_					0	0	0		tr|A0A553SMP5|A0A553SMP5_NIACIGlutamatesynthaselargesubunitOS=NialliacirculansOX=1397GN=CEQ21_22985PE=3SV=1	tr|A0A553SMP5|A0A553SMP5_NIACIGlutamatesynthaselargesubunitOS=NialliacirculansOX=1397GN=CEQ21_22985PE=3SV=1	tr|A0A553SMP5|A0A553SMP5_NIACIGlutamatesynthaselargesubunitOS=NialliacirculansOX=1397GN=CEQ21_22985PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.283203125	2	527.756872	1053.49919	-0.70175	-0.00037035	-4.4026	-0.0023235	-5.1043	-0.0026938	527.7544112225808	57.557	0.81454	54.213	53.934	54.748	-3.3449					42	15	5	0	0	0	0.028476	1	3733	3733		73.975	0	1	268900			9912	33858	8111	8120	10781	10781					-0.025417690191488873
ETRGAGPVLL	10	Unmodified	_ETRGAGPVLL_					0	0	0			REV__chr12:49891114-49891660|239|14.54|0.17|6.43|-|0|TE_info:L2c,L2c_dup102511,L2,LINE,donor,+,49891660,49891765|FAIM2,None|1	REV__chr12:49891114-49891660|239|14.54|0.17|6.43|-|0|TE_info:L2c,L2c_dup102511,L2,LINE,donor,+,49891660,49891765|FAIM2,None|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.79400634765625	2	506.792924	1011.57129	-1.266	-0.00064161	-1.5062	-0.00076332	-2.7722	-0.0014049	506.793092406575	71.551	1.0261	68.095	67.776	68.802	-3.4563					50	20	4	0	0	0	0.28845	1	5464	5464		82.241	5.4664	1	468980	+		9913	15880	8112	8121	10782	10782					0.06597145334569632
ETRGAGPVLL	10	Unmodified	_ETRGAGPVLL_					0	0	0			REV__chr12:49891114-49891660|239|14.54|0.17|6.43|-|0|TE_info:L2c,L2c_dup102511,L2,LINE,donor,+,49891660,49891765|FAIM2,None|1	REV__chr12:49891114-49891660|239|14.54|0.17|6.43|-|0|TE_info:L2c,L2c_dup102511,L2,LINE,donor,+,49891660,49891765|FAIM2,None|1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	506.792924	1011.57129	-0.12659	-6.4154E-05	-0.050433	-2.5559E-05	-0.17702	-8.9714E-05	506.79245128709334	70.586	1.0678	68.015	67.462	68.53	-2.5707	-0.039807	0.00025541	NaN	82.241	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97997	+		9914	15880	8112	8121							0.06597145334569632
ETRGRKTGP	9	Unmodified	_ETRGRKTGP_					0	0	0			REV__ENST00000379951.6_1_4:109089626-109090058:-|nuORF	REV__ENST00000379951.6_1_4:109089626-109090058:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.3093566894531	2	501.277972	1000.54139	1.5586	0.0007813	-2.5686	-0.0012876	-1.01	-0.00050628	501.2766845181318	119.95	0.70444	119.95	119.52	120.23	0					24	16	2	0	0	0	0.027433	1	13781	13781		42.396	1.618	1	213070	+		9915	25168	8113	8122	10783	10783					0.04114206389226638
ETRGTKQL	8	Unmodified	_ETRGTKQL_					0	0	0			REV__tr|A0A553SGU6|A0A553SGU6_NIACIUVDNAdamagerepairendonucleaseUvsEOS=NialliacirculansOX=1397GN=uvsEPE=4SV=1	REV__tr|A0A553SGU6|A0A553SGU6_NIACIUVDNAdamagerepairendonucleaseUvsEOS=NialliacirculansOX=1397GN=uvsEPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	466.7604064941406	2	466.761623	931.508694	-0.47023	-0.00021949	-1.4808	-0.00069119	-1.9511	-0.00091068	466.7608690013421	59.721	0.78355	59.721	59.494	60.277	0					49	19	3	0	0	0	0.56195	1	5165	5165		71.296	0	1	1944700	+		9916	29739	8114	8123	10784	10784					0.04019999266370178
ETRIVTLIT	9	Unmodified	_ETRIVTLIT_					0	0	0			REV__ENSG00000167360|ENST00000300778|OR51Q1	REV__ENSG00000167360|ENST00000300778|OR51Q1	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.282470703125	2	523.316232	1044.61791	0.88296	0.00046207	1.8924	0.00099035	2.7754	0.0014524	523.316950471272	79.259	0.39827	79.259	78.996	79.394	0					15	9	2	0	0	0	0.027462	1	8050	8050		17.365	5.8539	1	431850	+		9917	21272	8115	8124	10785	10785					0.09738585165860059
ETRKQLHLT	9	Unmodified	_ETRKQLHLT_					0	0	0		ENST00000304920.3_1_13:21296082-21296283:+|nuORF	ENST00000304920.3_1_13:21296082-21296283:+|nuORF	ENST00000304920.3_1_13:21296082-21296283:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.37744140625	2	563.32238	1124.63021	0.38985	0.00021961	2.5903	0.0014591	2.9801	0.0016788	563.3249368670164	71.54	1.1403	71.54	71.109	72.249	0					47	27	3	0	0	0	0.027462	1	6990	6990		19.997	0	1	557350			9918	10229	8116	8125	10786	10786					0.07287621628893248
ETRLKQIY	8	Unmodified	_ETRLKQIY_					0	0	0		ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.8192138671875	2	525.800749	1049.58694	-1.4795	-0.00077792	1.7362	0.00091291	0.25673	0.00013499	525.7992851485465	93.992	0.35777	92.03	91.78	92.138	-1.9617					8	6	2	0	0	0	0.028476	1	6043	6043		25.45	4.5032	1	4558			9919	8900	8117	8126	10787	10787					0.06413431851638052
ETRLNEVEKLL	11	Unmodified	_ETRLNEVEKLL_					0	0	0		ENST00000477592.2_1_6:3737425-3751765:-|nuORF;ENSG00000168994|ENST00000380283|PXDC1	ENST00000477592.2_1_6:3737425-3751765:-|nuORF	ENST00000477592.2_1_6:3737425-3751765:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	447.76141357421875	3	448.589153	1342.74563	-0.4744	-0.00021281	-2.7039	-0.0012129	-3.1783	-0.0014257	448.5880429113861	41.549	0.62225	38.569	38.231	38.853	-2.9804					15	11	2	0	0	0	0.026079	1	1867	1867		19.263	2.5453	1	21771			9920	6963	8118	8127	10788	10788					0.08796680969248882
ETRQLIIL	8	Unmodified	_ETRQLIIL_					0	0	0		tr|A0A7D6VR21|A0A7D6VR21_9CLOTWingedhelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23635PE=4SV=1	tr|A0A7D6VR21|A0A7D6VR21_9CLOTWingedhelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23635PE=4SV=1	tr|A0A7D6VR21|A0A7D6VR21_9CLOTWingedhelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23635PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	493.3042297363281	2	493.305667	984.596781	0.21345	0.00010529	-0.26429	-0.00013037	-0.050842	-2.5081E-05	493.3055378646589	106.33	1.1772	105.06	104.54	105.71	-1.267					66	22	4	0	0	0	0.66057	1	7489	7489		51.335	0	1	486830			9921	34886	8119	8128	10789	10789					0.10386619857001733
ETRQSNSAR	9	Unmodified	_ETRQSNSAR_					0	0	0		ENSG00000171587|ENST00000400454|DSCAM;nc|ENSG00000171587|O60469-2|DSCAM	ENSG00000171587|ENST00000400454|DSCAM	ENSG00000171587|ENST00000400454|DSCAM	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.7953491210938	2	524.760143	1047.50573	-1.0747	-0.00056396	-2.7631	-0.00145	-3.8378	-0.0020139	525.2609817058459	35.076	0.4741	35.076	34.772	35.246	0					13	9	2	0	0	0	0.027462	1	1727	1727		27.882	4.3595	1	30389			9922	7215	8120	8129	10790	10790					-0.01611875858429812
ETRRKKET	8	Unmodified	_ETRRKKET_					0	0	0			REV__nc|ENSG00000113163|Q9Y5P4-2|CERT1	REV__nc|ENSG00000113163|Q9Y5P4-2|CERT1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.298583984375	2	524.298904	1046.58326	0.60903	0.00031931	3.8676	0.0020278	4.4766	0.0023471	524.3013830221468	96.996	1.1513	94.57	94.169	95.321	-2.4256					47	22	3	0	0	0	0.028476	1	8626	8626		29.15	0	1	158840	+		9923	18136	8121	8130	10791	10791					0.06182762077764892
ETRRLDVFE	9	Unmodified	_ETRRLDVFE_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MSMS	OvCa9_classI_Rep2	2	582.8038940429688	2	582.80402	1163.59349	-0.70194	-0.00040909	0.34175	0.00019918	-0.36018	-0.00020992	582.8041189340825	74.55	1.0923	72.579	72.167	73.259	-1.9711					69	20	4	0	0	0	0.48047	1	6120	6120		44.377	3.599	1	410780			9924	7405	8122	8131	10792	10792					0.018233250123330436
ETRRLEWF	8	Unmodified	_ETRRLEWF_					0	0	0			REV__ENST00000220562.8_1_8:28610970-28611177:+|nuORF	REV__ENST00000220562.8_1_8:28610970-28611177:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	568.2428588867188	2	568.795998	1135.57744	0.59598	0.00033899	-3.8456	-0.0021874	-3.2496	-0.0018484	568.7922008886638	64.918	0.38772	61.433	61.212	61.599	-3.4854					10	7	2	0	0	0	0.028476	1	4631	4631		8.2313	0	1	14188	+		9925	23741	8123	8132	10793	10793					0.015076635660989268
ETRRLLRA	8	Unmodified	_ETRRLLRA_					0	0	0			REV__nc|ENSG00000182095|O15417-2|TNRC18	REV__nc|ENSG00000182095|O15417-2|TNRC18	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.760009765625	2	507.811982	1013.60941	1.8174	0.00092291	1.9188	0.00097441	3.7363	0.0018973	507.81297205107313	126.39	0.47163	126.39	126.13	126.61	0					12	9	2	0	0	0	0.028476	1	14615	14615		32.812	0	1	60785	+		9926	22262	8124	8133	10794	10794					0.1031507603989894
ETRRMLLD	8	Unmodified	_ETRRMLLD_					0	0	0		tr|A0A553STE1|A0A553STE1_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04680PE=4SV=1	tr|A0A553STE1|A0A553STE1_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04680PE=4SV=1	tr|A0A553STE1|A0A553STE1_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04680PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.7543334960938	2	517.276583	1032.53861	0.31391	0.00016238	-1.8511	-0.00095751	-1.5372	-0.00079513	517.2751006723291	99.284	1.2921	97.599	96.904	98.196	-1.685					29	24	2	0	0	0	0.028476	1	6692	6692		51.335	7.2187	1	53649			9927	34477	8125	8134	10795	10795					0.02364614940051979
ETRRMLLD	8	Unmodified	_ETRRMLLD_					0	0	0		tr|A0A553STE1|A0A553STE1_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04680PE=4SV=1	tr|A0A553STE1|A0A553STE1_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04680PE=4SV=1	tr|A0A553STE1|A0A553STE1_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04680PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.7547607421875	2	517.276583	1032.53861	-1.2231	-0.00063269	0.4128	0.00021353	-0.81032	-0.00041916	517.2773240194794	99.878	1.1757	97.553	97.263	98.439	-2.3253					37	22	3	0	0	0	0.028476	1	8956	8956		44.117	10.624	1	54086			9928	34477	8125	8134	10796	10796					0.02364614940051979
ETRRRLDPM	9	Unmodified	_ETRRRLDPM_					0	0	0		ENST00000569510.5_1_15:84323016-84530322:+|nuORF;ENST00000561483.5_1_15:84323016-84694242:+|nuORF	ENST00000569510.5_1_15:84323016-84530322:+|nuORF	ENST00000569510.5_1_15:84323016-84530322:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	588.2986450195312	2	587.311489	1172.60842	1.1175	0.00065632	1.4423	0.00084709	2.5598	0.0015034	587.31222872001	87.579	1.5897	86.148	85.334	86.924	-1.4311					74	31	4	0	0	0	0.027462	1	7548	7548		24.519	0	1	202060			9929	13756	8126	8135	10797	10797					0.029024936086671005
ETRVIYIITL	10	Unmodified	_ETRVIYIITL_					0	0	0			REV__OR51E1|p.I210Lfs*22|1|0.09|ENSG00000180785|chr11:4653154-4653154|A/-|frameshift_variant	REV__OR51E1|p.I210Lfs*22|1|0.09|ENSG00000180785|chr11:4653154-4653154|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	407.57977294921875	3	407.579818	1219.71762	0.61537	0.00025081	-2.9691	-0.0012102	-2.3538	-0.00095934	407.5786357790963	57.72	2.7424	54.928	54.526	57.269	-2.792					151	53	5	0	0	0	0.59317	1	4161	4161		42.864	1.4377	1	1780300	+		9930	22196	8127	8136	10798	10798					0.11655402779797441
ETRWPESL	8	Unmodified	_ETRWPESL_					0	0	0		ENST00000396578.7_1_2:228029329-228029443:+|nuORF	ENST00000396578.7_1_2:228029329-228029443:+|nuORF	ENST00000396578.7_1_2:228029329-228029443:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	509.25494384765625	2	509.253631	1016.49271	-0.3619	-0.0001843	0.13177	6.7103E-05	-0.23014	-0.0001172	509.25368017643194	68.42	1.801	68.42	67.955	69.756	0					112	43	5	0	0	0	0.58851	1	6506	6506		66.429	8.183	1	20759000			9931	11320	8128	8137	10799	10799					-0.014877069705221402
ETSAGPGKSL	10	Unmodified	_ETSAGPGKSL_					0	0	0		nc|ENSG00000155659|Q9Y279-3|VSIG4;VSIG4|p.Y317*|1|0.1|ENSG00000155659|chrX:66022852-66022852|G/-|frameshift_variant;nc|ENSG00000155659|Q9Y279-2|VSIG4;ENSG00000155659|ENST00000374737|VSIG4	nc|ENSG00000155659|Q9Y279-3|VSIG4	nc|ENSG00000155659|Q9Y279-3|VSIG4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.7645568847656	2	473.745639	945.476725	0.60866	0.00028835	4.0814	0.0019336	4.6901	0.0022219	473.74697331347375	56.402	0.45318	53.108	52.87	53.323	-3.2944					13	8	2	0	0	0	0.026464	1	3601	3601		51.193	0	1	15102			9932	5794	8129	8138	10800	10800					0.0018058679257819676
ETSARFNVN	9	Unmodified	_ETSARFNVN_					0	0	0		ENSG00000100852|ENST00000345122|ARHGAP5;nc|ENSG00000100852|Q13017-2|ARHGAP5;ARHGAP5|p.V224L|1|0.12|ENSG00000100852|chr14:32091339-32091339|G/T|missense_variant	ENSG00000100852|ENST00000345122|ARHGAP5	ENSG00000100852|ENST00000345122|ARHGAP5	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.7777099609375	2	519.254163	1036.49377	1.8702	0.00097113	3.8554	0.0020019	5.7257	0.0029731	519.2558372148466	95.806	0.59122	95.806	95.577	96.168	0					21	13	2	0	0	0	0.027453	1	10462	10462		37.812	9.9293	1	324010			9933	2112	8130	8139	10801	10801					-0.0230149260160033
ETSHPVLLT	9	Unmodified	_ETSHPVLLT_					0	0	0		ENSG00000187741|ENST00000389301|FANCA;nc|ENSG00000187741|O15360-3|FANCA;FANCA|p.E886Rfs*3|1|0.09|ENSG00000187741|chr16:89765012-89765012|C/-|frameshift_variant;nc|ENSG00000187741|O15360-2|FANCA	ENSG00000187741|ENST00000389301|FANCA	ENSG00000187741|ENST00000389301|FANCA	MULTI-SECPEP	OvCa9_classI_Rep2	2	499.28759765625	2	498.771657	995.528761	1.4622	0.00072931	-1.8263	-0.00091091	-0.36409	-0.0001816	498.7705050984597	90.399	1.9992	89.097	88.68	90.68	-1.302					74	37	5	0	0	0	0.027441	1	8020	8020		55.504	9.0474	1	253730			9934	8427	8131	8140	10802	10802					0.030817502063200664
ETSKYKEITL	10	Unmodified	_ETSKYKEITL_					0	0	0		nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1;nc|ENSG00000124406|Q9Y2Q0-2|ATP8A1;ENSG00000124406|ENST00000381668|ATP8A1	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	nc|ENSG00000124406|Q9Y2Q0-3|ATP8A1	MULTI-SECPEP	OvCa9_classI_Rep2	2	607.3147583007812	2	606.329536	1210.64452	-0.74592	-0.00045227	2.8927	0.0017539	2.1468	0.0013017	606.3303821171788	105.64	0.94855	105.21	104.8	105.75	-0.43642					26	18	2	0	0	0	0.026606	1	9852	9852		44.377	10.205	1	31804			9935	3648	8132	8141	10803	10803					0.0476222926652099
ETSLAQIPRL	10	Unmodified	_ETSLAQIPRL_					0	0	0			REV__FCGBP|p.G140S|1|0.16|ENSG00000275395|chr19:39927944-39927944|C/T|missense_variant	REV__FCGBP|p.G140S|1|0.16|ENSG00000275395|chr19:39927944-39927944|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	564.32568359375	2	564.324588	1126.63462	-0.81585	-0.00046041	0.067324	3.7993E-05	-0.74853	-0.00042241	564.3246540994279	102.18	2.4595	100.66	100.27	102.73	-1.5211					131	46	5	0	0	0	0.15262	1	7043	7043		101.6	15.739	1	5848300	+		9936	28132	8133	8142	10804	10804					0.0763708605179545
ETSLAQIPRL	10	Unmodified	_ETSLAQIPRL_					0	0	0			REV__FCGBP|p.G140S|1|0.16|ENSG00000275395|chr19:39927944-39927944|C/T|missense_variant	REV__FCGBP|p.G140S|1|0.16|ENSG00000275395|chr19:39927944-39927944|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.324462890625	2	564.324588	1126.63462	0.97654	0.00055109	-1.4497	-0.00081813	-0.47321	-0.00026704	564.3237500544434	102.85	2.5142	100.65	100.25	102.77	-2.1994					128	47	4	0	0	0	0.44431	1	9254	9254		62.107	1.9892	1	5226800	+		9937	28132	8133	8142	10805	10805					0.0763708605179545
ETSLRRLY	8	Unmodified	_ETSLRRLY_					0	0	0		ENSG00000137507|ENST00000260061|LRRC32	ENSG00000137507|ENST00000260061|LRRC32	ENSG00000137507|ENST00000260061|LRRC32	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.77001953125	2	519.290548	1036.56654	-0.75789	-0.00039357	-1.4739	-0.00076536	-2.2317	-0.0011589	519.2890038613136	82.803	0.82948	80.12	79.733	80.563	-2.6829					31	16	3	0	0	0	0.028476	1	6825	6825		50.025	11.218	1	42707			9938	4594	8134	8143	10806	10806					0.049722611918241455
ETSLRRLY	8	Unmodified	_ETSLRRLY_					0	0	0		ENSG00000137507|ENST00000260061|LRRC32	ENSG00000137507|ENST00000260061|LRRC32	ENSG00000137507|ENST00000260061|LRRC32	MULTI-MATCH	OvCa9_classI_Rep2	2		2	519.290548	1036.56654	0.66512	0.00034539	-5.2192	-0.0027103	-4.5541	-0.0023649	519.2880676468237	81.698	0.56815	80.049	79.818	80.386	-1.6485	-0.074139	-0.00094891	NaN	50.025	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26664			9939	4594	8134	8143							0.049722611918241455
ETSLRRLY	8	Unmodified	_ETSLRRLY_					0	0	0		ENSG00000137507|ENST00000260061|LRRC32	ENSG00000137507|ENST00000260061|LRRC32	ENSG00000137507|ENST00000260061|LRRC32	MULTI-MATCH	OvCa9_classI_Rep3	3		2	519.290548	1036.56654	-0.63712	-0.00033085	-4.0678	-0.0021124	-4.7049	-0.0024432	519.2887852717595	82.497	0.64369	80.201	79.836	80.48	-2.2963	0.07754	0.00024689	NaN	50.025	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43940			9940	4594	8134	8143							0.049722611918241455
ETSLYYLL	8	Unmodified	_ETSLYYLL_					0	0	0		nc|ENSG00000038532|Q2KHT3-2|CLEC16A;CLEC16A|p.Q832Rfs*57|1|0.03|ENSG00000038532|chr16:11126000-11126000|A/-|frameshift_variant;ENSG00000038532|ENST00000409790|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.30230712890625	2	501.263133	1000.51171	-1.1407	-0.00057179	-2.2978	-0.0011518	-3.4385	-0.0017236	501.26163433519713	99.138	0.44778	98.245	98.007	98.454	-0.89305					13	8	2	0	0	0	0.028476	1	9043	9043		65.897	2.919	1	7704.7			9941	14868	8135	8144	10807	10807					0.011478296005293487
ETSQLRSL	8	Unmodified	_ETSQLRSL_					0	0	0			REV__nc|ENSG00000158856|Q08495-3|DMTN	REV__nc|ENSG00000158856|Q08495-3|DMTN	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.25469970703125	2	467.253631	932.49271	-0.73821	-0.00034493	0.486	0.00022709	-0.25221	-0.00011785	467.25377769432754	55.43	1.5714	52.135	51.803	53.374	-3.2944					68	30	3	0	0	0	0.66992	1	3502	3502		49.442	0	1	778630	+		9942	20585	8136	8145	10808	10808					0.023762930294765283
ETSSSAMDMQI	11	Unmodified	_ETSSSAMDMQI_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;SYNE1|p.A5284Rfs*31|1|0.11|ENSG00000131018|chr6:152323546-152323547|-/C|frameshift_variant;SYNE1|p.T4511Lfs*10|1|0.03|ENSG00000131018|chr6:152331155-152331155|G/-|frameshift_variant;SYNE1|p.R3674Tfs*53|1|0.12|ENSG00000131018|chr6:152353650-152353651|-/ATAATTGCTTCAAAAATTTGAG|frameshift_variant;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;nc|ENSG00000131018|Q8NF91-6|SYNE1;SYNE1|p.V2560Dfs*2|1|0.09|ENSG00000131018|chr6:152395549-152395550|-/T|frameshift_variant	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OvCa99_classI_Rep5	1	599.365966796875	2	600.249571	1198.48459	1.7954	0.0010777	2.1745	0.0013053	3.9699	0.002383	600.2508430474289	127.41	0.71486	127.41	127.1	127.81	0					24	15	2	0	0	0	0.02538	1	14744	14744		23.523	0	1	150530			9943	4036	8137	8146	10809	10809					-0.10671390064476327
ETSTEVICPI	10	Unmodified	_ETSTEVICPI_					0	0	0		ENSG00000176407|ENST00000409785|KCMF1	ENSG00000176407|ENST00000409785|KCMF1	ENSG00000176407|ENST00000409785|KCMF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.8060302734375	2	546.26809	1090.52163	2.2242	0.001215	1.4777	0.00080723	3.7019	0.0020222	546.2697347362658	116.21	0.85696	116.21	116	116.86	0					23	18	2	0	0	0	0.026752	1	13361	13361		35.618	2.8059	1	136170			9944	7605	8138	8147	10810	10810					-0.020013504564076356
ETSTVLKDL	9	Unmodified	_ETSTVLKDL_					0	0	0		nc|ENSG00000111799|Q99715-4|COL12A1;ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-2|COL12A1	nc|ENSG00000111799|Q99715-4|COL12A1	nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.26531982421875	2	503.276772	1004.53899	-0.37732	-0.0001899	4.0623	0.0020445	3.685	0.0018546	503.2789795350876	60.098	0.35634	60.098	59.839	60.195	0					10	8	2	0	0	0	0.027062	1	5204	5204		110.12	22.366	1	147850			9945	2854	8139	8148	10811	10811					0.036903131409076195
ETTDILDILEL	11	Unmodified	_ETTDILDILEL_					0	0	0		nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-2|UNC80;nc|ENSG00000144406|Q8N2C7-4|UNC80;ENST00000489023.5_1_2:210693994-210832362:+|nuORF	nc|ENSG00000144406|Q8N2C7-7|UNC80	nc|ENSG00000144406|Q8N2C7-7|UNC80	MULTI-MSMS	OvCa9_classI_Rep3	3	637.8369140625	2	637.839933	1273.66531	-2.5473	-0.0016248	-2.7241	-0.0017375	-5.2714	-0.0033623	637.8379978583507	142.6	1.7807	141.59	141.08	142.86	-1.0106					85	35	3	0	0	0	0.48738	1	11805	11805		54.776	1.8396	1	112180			9946	5149	8140	8149	10812	10812					0.039427748555453945
ETTDLLLTRGL	11	Unmodified	_ETTDLLLTRGL_					0	0	0		tr|A0A553SQP9|A0A553SQP9_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_08050PE=4SV=1;tr|A0A553SQP2|A0A553SQP2_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_07070PE=4SV=1	tr|A0A553SQP9|A0A553SQP9_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_08050PE=4SV=1	tr|A0A553SQP9|A0A553SQP9_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_08050PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	410.57818603515625	3	411.234599	1230.68197	0.48145	0.00019799	0.36993	0.00015213	0.85137	0.00035011	411.23471539580754	39.398	0.42707	39.398	39.242	39.669	0					18	9	3	0	0	0	0.025638	1	2292	2292		21.032	0	1	361450			9947	34184	8141	8150	10813	10813					0.07585320532120932
ETTEALEQLN	10	Unmodified	_ETTEALEQLN_					0	0	0		tr|A0A553SNK8|A0A553SNK8_NIACIXREfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_24555PE=4SV=1	tr|A0A553SNK8|A0A553SNK8_NIACIXREfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_24555PE=4SV=1	tr|A0A553SNK8|A0A553SNK8_NIACIXREfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_24555PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	573.3222045898438	2	574.2775	1146.54045	-0.92893	-0.00053346	2.1296	0.001223	1.2007	0.00068954	574.2786702672155	103.89	0.42073	101.78	101.59	102.01	-2.1192					15	7	3	0	0	0	0.026826	1	9414	9414		44.377	3.599	1	24129			9948	33932	8142	8151	10814	10814					-0.026960975610109017
ETTESQRL	8	Unmodified	_ETTESQRL_					0	0	0			REV__ENST00000565934.1_1_16:8943319-8943457:+|nuORF	REV__ENST00000565934.1_1_16:8943319-8943457:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.2677001953125	2	482.240721	962.466889	2.1172	0.001021	2.1167	0.0010208	4.2339	0.0020417	482.241823889475	82.215	0.41541	82.215	81.979	82.394	0					14	9	2	0	0	0	0.028476	1	8531	8531		51.335	6.8044	1	217700	+		9949	27692	8143	8152	10815	10815					-0.01584601212812231
ETTFVLKAQ	9	Unmodified	_ETTFVLKAQ_					0	0	0			REV__tr|A0A553SS74|A0A553SS74_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02480PE=3SV=1	REV__tr|A0A553SS74|A0A553SS74_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02480PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.7777099609375	2	518.787307	1035.56006	1.6272	0.00084415	2.1283	0.0011041	3.7555	0.0019483	518.7884943808754	95.588	0.33409	95.588	95.451	95.785	0					11	7	2	0	0	0	0.027462	1	10462	10462		27.882	8.7787	1	302040	+		9950	30810	8144	8153	10816	10816					0.04370323240414109
ETTGERPPE	9	Unmodified	_ETTGERPPE_					0	0	0			REV__ENSG00000164077|ENST00000296473|MON1A	REV__ENSG00000164077|ENST00000296473|MON1A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.7964782714844	2	508.238178	1014.4618	0.33312	0.00016931	-0.95943	-0.00048762	-0.6263	-0.00031831	508.2375828903591	111.09	1.4212	109.49	109.02	110.44	-1.6011					45	26	3	0	0	0	0.027459	1	10311	10311		36.447	0	1	115350	+		9951	20936	8145	8154	10817	10817					-0.04484905075435108
ETTHHGRPL	9	Unmodified	_ETTHHGRPL_					0	0	0			REV__nc|ENSG00000107831|P55075-2|FGF8	REV__nc|ENSG00000107831|P55075-2|FGF8	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.7953491210938	2	524.270147	1046.52574	-0.79637	-0.00041751	0.31285	0.00016402	-0.48353	-0.0002535	524.270040212344	35.313	0.84303	35.313	34.818	35.661	0					32	17	3	0	0	0	0.027433	1	1727	1727		60.972	25.354	1	223900	+		9952	17860	8146	8155	10818	10818					0.004339198721709181
ETTILVWV	8	Unmodified	_ETTILVWV_					0	0	0		ENSG00000172461|ENST00000302103|FUT9	ENSG00000172461|ENST00000302103|FUT9	ENSG00000172461|ENST00000302103|FUT9	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.24676513671875	2	480.773668	959.532783	-0.15343	-7.3765E-05	-4.3107	-0.0020725	-4.4641	-0.0021462	480.7715852089197	58.744	0.63708	58.744	58.446	59.083	0					19	15	2	0	0	0	0.028476	1	5005	5005		50.025	25.822	1	220760			9953	7299	8147	8156	10819	10819					0.05139839700041193
ETTLLQPFI	9	Unmodified	_ETTLLQPFI_					0	0	0			REV__tr|A0A7D6ZIM1|A0A7D6ZIM1_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07615PE=3SV=1	REV__tr|A0A7D6ZIM1|A0A7D6ZIM1_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07615PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	531.2767333984375	2	531.297507	1060.58046	-2.4728	-0.0013138	-2.1533	-0.001144	-4.6261	-0.0024578	531.2961416317511	85.134	1.6864	83.588	82.95	84.636	-1.5462					89	33	4	0	0	0	0.02741	1	7427	7427		71.296	9.1883	1	298800	+		9954	32062	8148	8157	10820	10820					0.05259493900234702
ETTMLLENDSP	11	Oxidation (M)	_ETTM(Oxidation (M))LLENDSP_		ETTM(1)LLENDSP		ETTM(65)LLENDSP	0	0	1		nc|ENSG00000162594|Q5VWK5-5|IL23R;nc|ENSG00000162594|Q5VWK5-6|IL23R;nc|ENSG00000162594|Q5VWK5-2|IL23R;ENSG00000162594|ENST00000347310|IL23R;nc|ENSG00000162594|Q5VWK5-7|IL23R	nc|ENSG00000162594|Q5VWK5-5|IL23R	nc|ENSG00000162594|Q5VWK5-5|IL23R	MULTI-MSMS	OvCa99_classI_Rep5	1	633.2838745117188	2	633.281925	1264.5493	-0.53417	-0.00033828	3.276	0.0020746	2.7418	0.0017363	633.2838803329533	37.124	0.59997	37.124	36.931	37.531	0					30	12	3	0	0	0	0.34051	1	2018	2018		65.465	16.024	1	268550			9955	6199	8149	8158	10821	10821		194			-0.07239491986820212
ETTMRKLK	8	Oxidation (M)	_ETTM(Oxidation (M))RKLK_		ETTM(1)RKLK		ETTM(61)RKLK	0	0	1		ENST00000463890.5_1_3:114099754-114107884:-|nuORF	ENST00000463890.5_1_3:114099754-114107884:-|nuORF	ENST00000463890.5_1_3:114099754-114107884:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	511.7867126464844	2	511.786784	1021.55902	-0.34876	-0.00017849	0.97983	0.00050146	0.63107	0.00032297	511.7870588089586	114.99	2.1752	114.87	114.5	116.68	-0.11777					99	43	4	0	0	0	0.61436	1	10981	10981		60.972	13.056	1	358000			9956	12236	8150	8159	10822	10822		335			0.04909785599886618
ETTNRHTL	8	Unmodified	_ETTNRHTL_					0	0	0			REV__ENST00000490814.6_1_5:888486-889814:-|nuORF	REV__ENST00000490814.6_1_5:888486-889814:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.2900695800781	2	486.24888	970.483208	-1.369	-0.00066568	-3.5653	-0.0017336	-4.9344	-0.0023993	486.24734204768504	96.325	1.1698	94.496	94.123	95.293	-1.8286					29	22	2	0	0	0	0.028476	1	6330	6330		76.774	25.439	1	180220	+		9957	26659	8151	8160	10823	10823					-0.003214752560438683
ETTQYIMILYI	11	Unmodified	_ETTQYIMILYI_					0	0	0			REV__ENST00000398849.6_1_17:28942955-28960136:+|nuORF	REV__ENST00000398849.6_1_17:28942955-28960136:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	463.23590087890625	3	463.244106	1386.71049	0.2928	0.00013564	2.1396	0.00099115	2.4324	0.0011268	463.24496229169796	58.005	0.29495	58.005	57.899	58.194	0					11	6	2	0	0	0	0.025612	1	4903	4903		36.318	8.6737	1	176110	+		9958	25382	8152	8161	10824	10824					0.032603021170871216
ETTRHLMLPFW	11	Unmodified	_ETTRHLMLPFW_					0	0	0		ENST00000262507.10_1_16:57494656-57494761:+|nuORF	ENST00000262507.10_1_16:57494656-57494761:+|nuORF	ENST00000262507.10_1_16:57494656-57494761:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	476.7643737792969	3	477.579823	1429.71764	-0.18833	-8.9943E-05	2.1428	0.0010234	1.9545	0.00093342	477.5807202301004	33.427	0.34672	33.427	33.285	33.632	0					14	6	3	0	0	0	0.026113	1	1555	1555		18.531	0.69791	1	114520			9959	9892	8153	8162	10825	10825					0.01997079508146271
ETTRRWIF	8	Unmodified	_ETTRRWIF_					0	0	0		ENST00000307602.8_1_8:42885180-42885507:+|nuORF	ENST00000307602.8_1_8:42885180-42885507:+|nuORF	ENST00000307602.8_1_8:42885180-42885507:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	553.8290405273438	2	554.79854	1107.58253	-1.8394	-0.0010205	3.0945	0.0017168	1.255	0.0006963	554.8006488035145	137.69	0.63789	136.6	136.34	136.97	-1.0858					15	12	2	0	0	0	0.028476	1	11200	11200		21.702	2.3424	1	20196			9960	10257	8154	8163	10826	10826					0.03303967428678334
ETTRRWIF	8	Unmodified	_ETTRRWIF_					0	0	0		ENST00000307602.8_1_8:42885180-42885507:+|nuORF	ENST00000307602.8_1_8:42885180-42885507:+|nuORF	ENST00000307602.8_1_8:42885180-42885507:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	554.79854	1107.58253	0.18574	0.00010305	1.4629	0.00081159	1.6486	0.00091464	554.799387753184	137.06	0.48425	136.83	136.55	137.03	-0.22696	0.1488	0.0006998	NaN	21.702	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23764			9961	10257	8154	8163							0.03303967428678334
ETTTYRALI	9	Unmodified	_ETTTYRALI_					0	0	0			REV__ENSG00000103544|ENST00000417362|VPS35L	REV__ENSG00000103544|ENST00000417362|VPS35L	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.2903442382812	2	534.290214	1066.56587	-2.008	-0.0010729	1.9908	0.0010637	-0.017157	-9.1671E-06	534.2911228670016	100.1	1.7796	97.77	97.417	99.197	-2.3253					73	35	3	0	0	0	0.46356	1	8964	8964		45.972	0.020292	1	519230	+		9962	17625	8155	8164	10827	10827					0.03525421752101465
ETVCINATVCF	11	Unmodified	_ETVCINATVCF_					0	0	0		ENSG00000213949|ENST00000282588|ITGA1;ITGA1|p.L794Sfs*7|1|0.04|ENSG00000213949|chr5:52922862-52922863|-/T|frameshift_variant;ENST00000504669.5_1_5:52201585-52248278:+|nuORF	ENSG00000213949|ENST00000282588|ITGA1	ENSG00000213949|ENST00000282588|ITGA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	600.2721557617188	2	600.275392	1198.53623	-5.913	-0.0035494	0.33593	0.00020165	-5.577	-0.0033478	600.2754165352742	160.39	2.7294	158.78	158.34	161.07	-1.6101					180	65	4	0	0	0	0.72064	1	15947	15947		22.58	0.89391	1	309270			9963	9157	8156	8165	10828	10828					-0.05509601579933587
ETVDFKAPL	9	Unmodified	_ETVDFKAPL_					0	0	0		nc|ENSG00000079263|Q13342-3|SP140;nc|ENSG00000079263|Q13342-6|SP140;nc|ENSG00000079263|Q13342-5|SP140;ENSG00000079263|ENST00000392045|SP140	nc|ENSG00000079263|Q13342-3|SP140	nc|ENSG00000079263|Q13342-3|SP140	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.29327392578125	2	510.274032	1018.53351	-0.87207	-0.00044499	3.8493	0.0019642	2.9772	0.0015192	510.27595459819804	80.335	1.0212	77.624	76.884	77.906	-2.7106					34	20	2	0	0	0	0.027462	1	6496	6496		31.53	3.6476	1	60606			9964	1609	8157	8166	10829	10829					0.02498634349092299
ETVEEWKLL	9	Unmodified	_ETVEEWKLL_					0	0	0		ENSG00000110756|ENST00000349215|HPS5;nc|ENSG00000110756|Q9UPZ3-2|HPS5;ENST00000352460.7_1_11:18303495-18317646:-|nuORF	ENSG00000110756|ENST00000349215|HPS5	ENSG00000110756|ENST00000349215|HPS5	MULTI-SECPEP	OvCa9_classI_Rep2	2	573.3221435546875	2	573.805697	1145.59684	-1.9365	-0.0011112	-1.4207	-0.00081523	-3.3573	-0.0019264	573.8034594343954	102.27	0.39536	101.59	101.49	101.89	-0.68459					11	7	2	0	0	0	0.02744	1	9431	9431		44.377	0	1	14903			9965	2793	8158	8167	10830	10830					0.02986575066347541
ETVEWLRQRYD	11	Unmodified	_ETVEWLRQRYD_					0	0	0		nc|ENSG00000031003|Q9NYF5-2|FAM13B;nc|ENSG00000031003|Q9NYF5|FAM13B;ENSG00000031003|ENST00000689681|FAM13B	nc|ENSG00000031003|Q9NYF5-2|FAM13B	nc|ENSG00000031003|Q9NYF5-2|FAM13B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.8041076660156	3	498.91604	1493.72629	-0.085139	-4.2477E-05	1.9412	0.00096848	1.856	0.000926	498.91694835676066	59.454	1.0819	56.062	55.755	56.837	-3.392					45	21	3	0	0	0	0.026401	1	3943	3943		8.4073	0	1	185430			9966	1066	8159	8168	10831	10831					-0.0008227532168803009
ETVGGIALSI	10	Unmodified	_ETVGGIALSI_					0	0	0			REV__ENSG00000079134|ENST00000261600|THOC1	REV__ENSG00000079134|ENST00000261600|THOC1	MULTI-MSMS	OvCa99_classI_Rep5	1	480.2747497558594	2	480.274032	958.533512	2.1704	0.0010424	-0.85663	-0.00041141	1.3138	0.00063097	480.27366774358194	77.359	1.8665	77.359	77.044	78.911	0					130	44	5	0	0	0	0.35465	1	7897	7897		74.255	6.7614	1	54701000	+		9967	17034	8160	8169	10832	10832					0.05258634349092972
ETVGGIALSI	10	Unmodified	_ETVGGIALSI_					0	0	0			REV__ENSG00000079134|ENST00000261600|THOC1	REV__ENSG00000079134|ENST00000261600|THOC1	MULTI-MSMS	OvCa9_classI_Rep2	2	480.27325439453125	2	480.274032	958.533512	-0.0060536	-2.9074E-06	-0.56415	-0.00027095	-0.5702	-0.00027385	480.27371035695916	79.242	2.6823	77.502	76.092	78.774	-1.7398					165	52	5	0	0	0	0.41408	1	6652	6652		66.429	2.8954	1	1317200	+		9968	17034	8160	8169	10833	10833					0.05258634349092972
ETVGLIHGSF	10	Unmodified	_ETVGLIHGSF_					0	0	0		SLC17A8|p.R189Efs*6|1|0.05|ENSG00000179520|chr12:100393459-100393459|C/-|frameshift_variant;nc|ENSG00000179520|Q8NDX2-2|SLC17A8;ENSG00000179520|ENST00000323346|SLC17A8;ENST00000598018.1_1_19:49936751-49940072:-|nuORF;nc|ENSG00000104888|Q9P2U7-2|SLC17A7;nc|ENSG00000104888|Q9P2U7-3|SLC17A7;ENSG00000104888|ENST00000221485|SLC17A7	SLC17A8|p.R189Efs*6|1|0.05|ENSG00000179520|chr12:100393459-100393459|C/-|frameshift_variant	SLC17A8|p.R189Efs*6|1|0.05|ENSG00000179520|chr12:100393459-100393459|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2623291015625	2	530.277106	1058.53966	1.1525	0.00061112	0.76165	0.00040389	1.9141	0.001015	530.7792136206556	90.891	0.67706	90.891	90.738	91.415	0					29	16	2	0	0	0	0.026665	1	9827	9827		34.173	0	1	646830			9969	7827	8161	8170	10834	10834					0.01273152580643
ETVHIDVLQ	9	Unmodified	_ETVHIDVLQ_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.283203125	2	527.282389	1052.55022	-0.61967	-0.00032674	0.13202	6.9614E-05	-0.48764	-0.00025713	527.2823758213267	57.253	2.0733	53.908	53.324	55.397	-3.3449					118	40	5	0	0	0	0.31747	1	3733	3733		60.972	2.19	1	2251800	+		9970	22219	8162	8171	10835	10835					0.026051352350577872
ETVKNMSVEDL	11	Unmodified	_ETVKNMSVEDL_					0	0	0			REV__ENSG00000182896|ENST00000576060|TMEM95	REV__ENSG00000182896|ENST00000576060|TMEM95	MULTI-SECPEP	OvCa99_classI_Rep5	1	631.8546142578125	2	632.80811	1263.60167	2.416	0.0015289	-2.9854	-0.0018892	-0.56931	-0.00036027	632.8062186912719	100.17	0.29629	100.17	99.984	100.28	0					9	6	2	0	0	0	0.025701	1	11100	11100		16.717	0	1	175530	+		9971	22325	8163	8172	10836	10836					-0.019589088532029564
ETVLAALRKS	10	Unmodified	_ETVLAALRKS_					0	0	0		ENSG00000127720|ENST00000248306|METTL25;ENST00000547985.1_1_12:82752311-82780584:+|nuORF;ENST00000548569.5_1_12:82752311-82782582:+|nuORF;ENST00000547357.5_1_12:82752311-82853681:+|nuORF	ENSG00000127720|ENST00000248306|METTL25	ENSG00000127720|ENST00000248306|METTL25	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.79638671875	2	544.327131	1086.63971	0.72183	0.00039291	-3.2351	-0.0017609	-2.5132	-0.001368	544.3263852120335	67.116	0.23575	67.116	66.977	67.212	0					9	5	2	0	0	0	0.026956	1	6268	6268		19.997	0	1	536420			9972	3844	8164	8173	10837	10837					0.09985389914413645
ETVLFTSLK	9	Unmodified	_ETVLFTSLK_					0	0	0		tr|A0A553SJX8|A0A553SJX8_NIACIAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitalphaOS=NialliacirculansOX=1397GN=accAPE=3SV=1	tr|A0A553SJX8|A0A553SJX8_NIACIAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitalphaOS=NialliacirculansOX=1397GN=accAPE=3SV=1	tr|A0A553SJX8|A0A553SJX8_NIACIAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitalphaOS=NialliacirculansOX=1397GN=accAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.7786254882812	2	519.297507	1036.58046	1.9392	0.001007	0.41185	0.00021387	2.351	0.0012209	519.2976321502396	94.941	1.1432	94.941	94.433	95.577	0					38	26	2	0	0	0	0.027462	1	10433	10433		32.812	0	1	1241600			9973	33550	8165	8174	10838	10838					0.06363493900221329
ETVPKARPR	9	Unmodified	_ETVPKARPR_					0	0	0			REV__ENST00000460191.1_1_1:94344462-94344540:-|nuORF	REV__ENST00000460191.1_1_1:94344462-94344540:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	527.3118896484375	2	527.311815	1052.60908	-0.12888	-6.7957E-05	-0.44205	-0.0002331	-0.57092	-0.00030105	527.3115940412447	45.091	0.74583	45.091	44.795	45.54	0					42	16	3	0	0	0	0.61208	1	3100	3100		30.504	2.6214	1	5423000	+		9974	26074	8166	8175	10839	10839					0.08487656320016868
ETVPLQFEPQ	10	Unmodified	_ETVPLQFEPQ_					0	0	0			REV__nc|ENSG00000020577|Q9UPU9-2|SAMD4A	REV__nc|ENSG00000020577|Q9UPU9-2|SAMD4A	MULTI-SECPEP	OvCa9_classI_Rep3	3	594.8278198242188	2	594.300778	1186.587	-0.44894	-0.0002668	-3.569	-0.002121	-4.0179	-0.0023878	594.2985478480973	76.011	1.7446	73.64	72.813	74.558	-2.3715					62	33	3	0	0	0	0.026653	1	3984	3984		49.536	0	1	61685	+		9975	16541	8167	8176	10840	10840					0.001173870609363803
ETVPPSERVK	10	Unmodified	_ETVPPSERVK_					0	0	0			REV__ENST00000261402.6_1_12:106532525-106533446:-|nuORF	REV__ENST00000261402.6_1_12:106532525-106533446:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.3350219726562	2	571.31422	1140.61389	2.492	0.0014237	-3.3626	-0.0019211	-0.8706	-0.00049738	571.8132365268773	115.75	0.42097	115.75	115.54	115.96	0					17	7	3	0	0	0	0.026915	1	13232	13232		14.865	0	1	121990	+		9976	23947	8168	8177	10841	10841					0.049204956721496274
ETVQQRPLP	9	Unmodified	_ETVQQRPLP_					0	0	0			REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.2861328125	2	534.29583	1066.57711	-1.8415	-0.00098391	1.828	0.00097671	-0.013484	-7.2042E-06	534.2966870258227	53.809	1.0737	50.562	50.109	51.183	-3.2474					34	20	2	0	0	0	0.027418	1	3309	3309		58.782	25.266	1	140160	+		9977	16748	8169	8178	10842	10842					0.04648243846236255
ETVQVALDL	9	Unmodified	_ETVQVALDL_					0	0	0			REV__ENSG00000163823|ENST00000296140|CCR1	REV__ENSG00000163823|ENST00000296140|CCR1	MULTI-MSMS	OvCa99_classI_Rep5	1	494.2732849121094	2	494.27149	986.528426	-0.32902	-0.00016262	0.74046	0.00036599	0.41144	0.00020336	494.2717061608377	69.353	0.98519	69.353	68.977	69.962	0					55	23	3	0	0	0	0.14855	1	6574	6574		85.161	2.9203	1	3170200	+		9978	20898	8170	8179	10843	10843					0.034623304864680904
ETVQVFIDL	9	Unmodified	_ETVQVFIDL_					0	0	0		sp|P17149|PRIM_HCMVADNAprimaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL70PE=1SV=2;sp|F5HG51|PRIM_HCMVMDNAprimaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL70PE=3SV=1	sp|P17149|PRIM_HCMVADNAprimaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL70PE=1SV=2	sp|P17149|PRIM_HCMVADNAprimaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL70PE=1SV=2	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.2933349609375	2	532.28714	1062.55973	2.3268	0.0012385	-3.7793	-0.0020117	-1.4525	-0.00077316	532.2850838816482	102.81	0.37828	102.81	102.68	103.05	0					12	8	2	0	0	0	0.027425	1	11456	11456		60.118	0	1	366710			9979	32873	8171	8180	10844	10844					0.030949035205594555
ETVQVFIDL	9	Unmodified	_ETVQVFIDL_					0	0	0		sp|P17149|PRIM_HCMVADNAprimaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL70PE=1SV=2;sp|F5HG51|PRIM_HCMVMDNAprimaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL70PE=3SV=1	sp|P17149|PRIM_HCMVADNAprimaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL70PE=1SV=2	sp|P17149|PRIM_HCMVADNAprimaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL70PE=1SV=2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	532.28714	1062.55973	-1.8572	-0.00098856	0.95792	0.00050989	-0.89926	-0.00047867	532.2872122493646	103.23	0.49308	102.55	102.33	102.82	-0.68459	-0.13202	0.0021456	NaN	60.118	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21834			9980	32873	8171	8180							0.030949035205594555
ETVRRPFF	8	Unmodified	_ETVRRPFF_					0	0	0		sp|P16727|UL84_HCMVAProteinUL84OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL84PE=1SV=1;sp|F5HB40|UL84_HCMVMProteinUL84OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL84PE=3SV=1	sp|P16727|UL84_HCMVAProteinUL84OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL84PE=1SV=1	sp|P16727|UL84_HCMVAProteinUL84OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL84PE=1SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.8321533203125	2	526.287808	1050.56106	1.7952	0.00094481	1.959	0.001031	3.7542	0.0019758	526.7903186655304	79.747	0.36092	79.747	79.546	79.907	0					11	8	2	0	0	0	0.028476	1	8135	8135		26.796	13.984	1	196150			9981	32851	8172	8181	10845	10845					0.03780582399986088
ETVSFFTKKKK	11	Unmodified	_ETVSFFTKKKK_					0	0	0		ENST00000481837.1_1_20:19998833-20003229:+|nuORF	ENST00000481837.1_1_20:19998833-20003229:+|nuORF	ENST00000481837.1_1_20:19998833-20003229:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	448.9123229980469	3	448.262489	1341.76564	0.34702	0.00015556	-3.2489	-0.0014564	-2.9019	-0.0013008	448.2608417003649	35.609	0.59935	35.609	35.475	36.074	0					25	12	3	0	0	0	0.026204	1	1801	1801		16.53	3.0219	1	85881			9982	12554	8173	8182	10846	10846					0.10842476699826875
ETVSLAPSIKS	11	Unmodified	_ETVSLAPSIKS_					0	0	0			REV__ENSG00000120451|ENST00000265909|SNX19	REV__ENSG00000120451|ENST00000265909|SNX19	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.758544921875	2	566.316428	1130.6183	2.2031	0.0012477	0.37597	0.00021292	2.5791	0.0014606	566.3165993849309	90.608	0.99901	90.608	89.977	90.976	0					32	24	2	0	0	0	0.025297	1	9710	9710		43.651	0	1	1666500	+		9983	18500	8174	8183	10847	10847					0.05821960095022405
ETVSQPRIL	9	Unmodified	_ETVSQPRIL_					0	0	0		ENST00000521031.1_1_5:153414374-153414452:-|nuORF	ENST00000521031.1_1_5:153414374-153414452:-|nuORF	ENST00000521031.1_1_5:153414374-153414452:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.835693359375	2	521.798206	1041.58186	-0.73801	-0.00038509	1.8326	0.00095624	1.0946	0.00057115	521.7990266319912	71.383	0.4791	71.383	71.15	71.629	0					25	11	3	0	0	0	0.027447	1	6884	6884		66.429	18.772	1	1275400			9984	13115	8175	8184	10848	10848					0.06273127989015848
ETVSQPRIL	9	Unmodified	_ETVSQPRIL_					0	0	0		ENST00000521031.1_1_5:153414374-153414452:-|nuORF	ENST00000521031.1_1_5:153414374-153414452:-|nuORF	ENST00000521031.1_1_5:153414374-153414452:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	521.798206	1041.58186	-0.23133	-0.00012071	-0.19202	-0.0001002	-0.42336	-0.00022091	521.7980302104578	73.852	0.69437	71.365	71.074	71.769	-2.4873	-0.0090378	-7.4559E-05	NaN	71.877	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94822			9985	13115	8175	8184							0.06273127989015848
ETVSSELKK	9	Unmodified	_ETVSSELKK_					0	0	0		ENSG00000164404|ENST00000687138|GDF9	ENSG00000164404|ENST00000687138|GDF9	ENSG00000164404|ENST00000687138|GDF9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.76812744140625	2	510.782222	1019.54989	-0.1144	-5.8433E-05	-0.72412	-0.00036987	-0.83852	-0.0004283	511.28363749225235	57.532	0.3566	54.187	53.883	54.24	-3.3449					8	6	2	0	0	0	0.027462	1	3742	3742		17.365	0	1	13755			9986	6454	8176	8185	10849	10849					0.04089715515203807
ETVSSKII	8	Unmodified	_ETVSSKII_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.L860Qfs*23|1|0.12|ENSG00000137628|chr4:168272134-168272135|-/AACTT|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-SECPEP	OvCa99_classI_Rep5	1	439.2438659667969	2	438.755475	875.496398	3.2046	0.001406	0.91646	0.0004021	4.1211	0.0018081	438.75577675771245	83.932	0.63025	83.932	83.801	84.431	0					23	14	2	0	0	0	0.028476	1	8791	8791		38.806	0	1	283820			9987	4602	8177	8186	10850	10850					0.05366962803338993
ETVSWLHTN	9	Unmodified	_ETVSWLHTN_					0	0	0			REV__tr|A0A553SG79|A0A553SG79_NIACIPeptideABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10350PE=3SV=1	REV__tr|A0A553SG79|A0A553SG79_NIACIPeptideABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10350PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.79638671875	2	543.764363	1085.51417	0.73277	0.00039845	0.78973	0.00042943	1.5225	0.00082788	543.764169572931	67.119	0.23575	67.119	66.977	67.212	0					14	5	3	0	0	0	0.027461	1	6268	6268		32.812	11.865	1	1208800	+		9988	29671	8178	8187	10851	10851					-0.025163219418118388
ETVTKILNN	9	Unmodified	_ETVTKILNN_					0	0	0			REV__tr|A0A553SP96|A0A553SP96_NIACIIsoleucine--tRNAligaseOS=NialliacirculansOX=1397GN=ileSPE=3SV=1	REV__tr|A0A553SP96|A0A553SP96_NIACIIsoleucine--tRNAligaseOS=NialliacirculansOX=1397GN=ileSPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.3062744140625	2	516.290214	1030.56587	1.6235	0.00083821	3.044	0.0015716	4.6675	0.0024098	516.2917980463626	118.37	0.70535	118.37	118.16	118.86	0					19	14	2	0	0	0	0.027418	1	13616	13616		71.877	5.4482	1	133250	+		9989	30516	8179	8188	10852	10852					0.051814217520814054
ETVVEEPVD	9	Unmodified	_ETVVEEPVD_					0	0	0		nc|ENSG00000143624|Q68E01-3|INTS3;ENSG00000143624|ENST00000318967|INTS3;nc|ENSG00000143624|Q68E01|INTS3;nc|ENSG00000143624|Q68E01-4|INTS3	nc|ENSG00000143624|Q68E01-3|INTS3	nc|ENSG00000143624|Q68E01-3|INTS3	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.2670593261719	2	508.742762	1015.47097	-0.82471	-0.00041956	2.0918	0.0010642	1.2671	0.00064462	508.74354829502806	49.895	0.43259	49.895	49.723	50.156	0					13	9	2	0	0	0	0.027448	1	3734	3734		35.618	0	1	449120			9990	5079	8180	8189	10853	10853					-0.036145565097626786
ETVVKKKR	8	Unmodified	_ETVVKKKR_					0	0	0		ENST00000512507.5_1_5:134695871-134696306:-|nuORF	ENST00000512507.5_1_5:134695871-134696306:-|nuORF	ENST00000512507.5_1_5:134695871-134696306:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	495.2965393066406	2	494.319109	986.623664	2.0784	0.0010274	2.0483	0.0010125	4.1266	0.0020399	494.31994886277636	88.892	0.59256	87.524	87.329	87.922	-1.3676					15	11	2	0	0	0	0.028476	1	7789	7789		25.45	0	1	14104			9991	12997	8181	8190	10854	10854					0.12981728468184883
ETVVSFVPK	9	Unmodified	_ETVVSFVPK_					0	0	0			REV__ENST00000465033.1_1_7:129098169-129100351:+|nuORF	REV__ENST00000465033.1_1_7:129098169-129100351:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.2831726074219	2	503.2844	1004.55425	0.10597	5.3333E-05	-3.112	-0.0015662	-3.0061	-0.0015129	503.2826488016644	37.924	1.3398	35.032	34.741	36.081	-2.8925					63	26	4	0	0	0	0.37135	1	1460	1460		54.776	10.66	1	384430	+		9992	26161	8182	8191	10855	10855					0.05215224728760859
ETWGGGRAIN	10	Unmodified	_ETWGGGRAIN_					0	0	0		ENST00000397068.7_2_11:3661554-3663324:-|nuORF	ENST00000397068.7_2_11:3661554-3663324:-|nuORF	ENST00000397068.7_2_11:3661554-3663324:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2883911132812	2	530.762155	1059.50976	0.94385	0.00050096	-0.71394	-0.00037893	0.22991	0.00012203	530.7619849095213	101.38	0.37188	101.38	101.23	101.61	0					13	8	2	0	0	0	0.026635	1	11252	11252		39.253	0	1	88028			9993	11337	8183	8192	10856	10856					-0.01761786364704676
ETWGGGRAIN	10	Unmodified	_ETWGGGRAIN_					0	0	0		ENST00000397068.7_2_11:3661554-3663324:-|nuORF	ENST00000397068.7_2_11:3661554-3663324:-|nuORF	ENST00000397068.7_2_11:3661554-3663324:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	530.762155	1059.50976	-0.33264	-0.00017655	2.2576	0.0011982	1.925	0.0010217	531.2610511183934	102.65	0.83167	101.12	100.63	101.47	-1.5211	-0.12933	0.0012759	NaN	60.118	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29955			9994	11337	8183	8192							-0.01761786364704676
ETWPKKALF	9	Unmodified	_ETWPKKALF_					0	0	0			REV__ENSG00000144035|ENST00000272425|NAT8	REV__ENSG00000144035|ENST00000272425|NAT8	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.7520751953125	2	560.313492	1118.61243	2.0224	0.0011332	-4.1431	-0.0023214	-2.1207	-0.0011883	560.8113064646253	91.277	0.39906	91.277	91.016	91.415	0					13	9	2	0	0	0	0.027462	1	9839	9839		31.53	0	1	362860	+		9995	19886	8184	8193	10857	10857					0.057869063740326965
ETYFWQLF	8	Unmodified	_ETYFWQLF_					0	0	0			REV__ENST00000347559.6_1_1:156108990-156109185:+|nuORF	REV__ENST00000347559.6_1_1:156108990-156109185:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.8128662109375	2	567.26875	1132.52295	-0.6877	-0.00039011	0.58515	0.00033194	-0.10255	-5.8171E-05	567.2691406199899	89.905	2.0299	87.824	87.094	89.124	-2.0805					64	39	2	0	0	0	0.028476	1	5660	5660		42.474	0	1	57130	+		9996	24702	8185	8194	10858	10858					-0.038013483053418895
ETYHVTLTL	9	Unmodified	_ETYHVTLTL_					0	0	0		nc|ENSG00000172375|O14523-2|C2CD2L;ENSG00000172375|ENST00000648610|C2CD2L;ENST00000529874.5_1_11:118980840-118984381:+|nuORF	nc|ENSG00000172375|O14523-2|C2CD2L	nc|ENSG00000172375|O14523-2|C2CD2L	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.2735595703125	2	538.784764	1075.55498	1.7303	0.00093226	1.2994	0.00070009	3.0297	0.0016324	538.7860740968101	98.099	0.77172	98.099	97.78	98.552	0					29	17	2	0	0	0	0.027462	1	10793	10793		21.96	0	1	1152100			9997	7295	8186	8195	10859	10859					0.020220193778186513
ETYLRYCK	8	Unmodified	_ETYLRYCK_					0	0	0			REV__nc|ENSG00000101452|Q9H5Z1-2|DHX35	REV__nc|ENSG00000101452|Q9H5Z1-2|DHX35	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.7892456054688	2	538.265684	1074.51682	-2.5059	-0.0013488	-0.93601	-0.00050382	-3.4419	-0.0018526	538.7674721657224	49.161	1.2458	46.02	45.417	46.663	-3.1416					43	23	3	0	0	0	0.028476	1	2764	2764		24.203	0	1	34896	+		9998	16836	8187	8196	10860	10860					-0.01746189808500276
ETYVVNLLL	9	Unmodified	_ETYVVNLLL_					0	0	0		ENSG00000279514|ENST00000623907|OR4C16	ENSG00000279514|ENST00000623907|OR4C16	ENSG00000279514|ENST00000623907|OR4C16	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.7921142578125	2	532.305332	1062.59611	0.7678	0.0004087	-1.6282	-0.00086671	-0.86042	-0.00045801	532.3045001950425	105.86	0.57268	104.51	104.2	104.77	-1.3482					19	10	2	0	0	0	0.027462	1	7418	7418		35.618	0	1	30691			9999	9598	8188	8197	10861	10861					0.0673178041729443
EVAALIHDF	9	Unmodified	_EVAALIHDF_					0	0	0			REV__ENSG00000135740|ENST00000299798|SLC9A5	REV__ENSG00000135740|ENST00000299798|SLC9A5	MULTI-MSMS	OvCa9_classI_Rep2	2	507.76611328125	2	507.766374	1013.5182	0.43978	0.0002233	-0.32354	-0.00016428	0.11624	5.9022E-05	507.76605298589374	131.19	1.6749	130.96	130.26	131.93	-0.22696					79	33	3	0	0	0	0.55588	1	12930	12930		37.159	5.2042	1	124560	+		10000	19316	8189	8198	10862	10862					0.011977675518892283
EVADPALAGD	10	Unmodified	_EVADPALAGD_					0	0	0			REV__FCGBP|p.A1781Dfs*19|1|0.1|ENSG00000275395|chr19:39894419-39894419|G/-|frameshift_variant	REV__FCGBP|p.A1781Dfs*19|1|0.1|ENSG00000275395|chr19:39894419-39894419|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.3013916015625	2	479.229822	956.445091	-2.1429	-0.0010269	2.5947	0.0012435	0.45184	0.00021654	479.230877705002	87.937	1.2106	85.334	84.723	85.933	-2.6027					31	23	2	0	0	0	0.026688	1	7497	7497		40.778	11.629	1	15420	+		10001	23626	8190	8199	10863	10863					-0.03487405961391232
EVAEALQNN	9	Unmodified	_EVAEALQNN_					0	0	0		tr|A0A553SNY8|A0A553SNY8_NIACIflagellarmotorswitchproteinFliMOS=NialliacirculansOX=1397GN=fliMPE=3SV=1	tr|A0A553SNY8|A0A553SNY8_NIACIflagellarmotorswitchproteinFliMOS=NialliacirculansOX=1397GN=fliMPE=3SV=1	tr|A0A553SNY8|A0A553SNY8_NIACIflagellarmotorswitchproteinFliMOS=NialliacirculansOX=1397GN=fliMPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.3070983886719	2	494.240721	986.466889	0.64423	0.0003184	2.0992	0.0010375	2.7435	0.0013559	494.24131189835254	140.15	0.42984	140.15	139.92	140.35	0					17	8	3	0	0	0	0.027462	1	16380	16380		40.778	7.2626	1	84580			10002	33982	8191	8200	10864	10864					-0.026886012128102266
EVAEGAVTIL	10	Unmodified	_EVAEGAVTIL_					0	0	0		nc|ENSG00000124493|Q14833-3|GRM4;nc|ENSG00000124493|Q14833-2|GRM4;nc|ENSG00000124493|Q14833-4|GRM4;nc|ENSG00000124493|Q14833-5|GRM4;ENSG00000124493|ENST00000538487|GRM4	nc|ENSG00000124493|Q14833-3|GRM4	nc|ENSG00000124493|Q14833-3|GRM4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.781005859375	2	501.279315	1000.54408	-1.3508	-0.00067712	-1.0093	-0.00050595	-2.3601	-0.0011831	501.2784174588682	41.501	1.3902	38.52	37.97	39.361	-2.9804					41	26	3	0	0	0	0.026688	1	1925	1925		32.812	14.55	1	170400			10003	3655	8192	8201	10865	10865					0.04382617003534506
EVAEHVSNMI	10	Unmodified	_EVAEHVSNMI_					0	0	0			REV__tr|A0A553SM93|A0A553SM93_NIACIThiaminepyrophosphate-dependentdehydrogenaseE1componentsubunitalphaOS=NialliacirculansOX=1397GN=CEQ21_22075PE=4SV=1	REV__tr|A0A553SM93|A0A553SM93_NIACIThiaminepyrophosphate-dependentdehydrogenaseE1componentsubunitalphaOS=NialliacirculansOX=1397GN=CEQ21_22075PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.3651733398438	2	564.771331	1127.52811	2.9326	0.0016562	-3.72	-0.0021009	-0.78736	-0.00044468	564.7692869960805	94.48	0.42739	94.48	94.22	94.648	0					16	9	2	0	0	0	0.026462	1	10280	10280		56.721	0	1	345330	+		10004	30309	8193	8202	10866	10866					-0.03055412505023014
EVAEVKPKP	9	Unmodified	_EVAEVKPKP_					0	0	0		ENSG00000167394|ENST00000300849|ZNF668;nc|ENSG00000167394|Q96K58-2|ZNF668	ENSG00000167394|ENST00000300849|ZNF668	ENSG00000167394|ENST00000300849|ZNF668	MULTI-MSMS	OvCa9_classI_Rep3	3	499.7872009277344	2	498.78985	995.565146	0.032773	1.6347E-05	-2.6432	-0.0013184	-2.6105	-0.0013021	498.78956440605833	118.98	1.288	117.95	117.58	118.87	-1.0271					73	25	4	0	0	0	0.55011	1	8989	8989		37.812	4.9991	1	100180			10005	6787	8194	8203	10867	10867					0.06718627103043673
EVAFKRKF	8	Unmodified	_EVAFKRKF_					0	0	0			REV__nc|ENSG00000229809|P0C7X2-5|ZNF688	REV__nc|ENSG00000229809|P0C7X2-5|ZNF688	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.3203735351562	2	512.800552	1023.58655	-1.1291	-0.00057898	-2.8383	-0.0014555	-3.9674	-0.0020345	512.7989411245918	55.063	0.71418	51.816	51.593	52.307	-3.2474					28	13	3	0	0	0	0.028476	1	3436	3436		33.516	0	1	82635	+		10006	23378	8195	8204	10868	10868					0.07570056922418189
EVAGGGRKPW	10	Unmodified	_EVAGGGRKPW_					0	0	0		tr|A0A553SHA4|A0A553SHA4_NIACILargeribosomalsubunitproteinuL4OS=NialliacirculansOX=1397GN=rplDPE=3SV=1	tr|A0A553SHA4|A0A553SHA4_NIACILargeribosomalsubunitproteinuL4OS=NialliacirculansOX=1397GN=rplDPE=3SV=1	tr|A0A553SHA4|A0A553SHA4_NIACILargeribosomalsubunitproteinuL4OS=NialliacirculansOX=1397GN=rplDPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.3046875	2	528.78289	1055.55123	0.76149	0.00040266	1.9296	0.0010203	2.6911	0.001423	528.7838168006027	157.96	0.6196	157.96	157.65	158.27	0					21	11	3	0	0	0	0.026752	1	18496	18496		35.618	12.096	1	33262			10007	33251	8196	8205	10869	10869					0.025673943945776045
EVAKEDAVN	9	Unmodified	_EVAKEDAVN_					0	0	0			REV__tr|A0A553SG48|A0A553SG48_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_10185PE=3SV=1	REV__tr|A0A553SG48|A0A553SG48_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_10185PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.78887939453125	2	487.743096	973.47164	1.9613	0.00095661	-2.2961	-0.0011199	-0.33479	-0.00016329	487.74206446299854	88.926	0.88552	87.558	86.987	87.873	-1.3676					24	17	2	0	0	0	0.027461	1	7834	7834		49.442	3.4896	1	16926	+		10008	29660	8197	8206	10870	10870					-0.01615717070046685
EVAKQLLGR	9	Unmodified	_EVAKQLLGR_					0	0	0		tr|A0A553SRZ9|A0A553SRZ9_NIACIFAD-dependentmonooxygenaseOS=NialliacirculansOX=1397GN=CEQ21_02100PE=4SV=1	tr|A0A553SRZ9|A0A553SRZ9_NIACIFAD-dependentmonooxygenaseOS=NialliacirculansOX=1397GN=CEQ21_02100PE=4SV=1	tr|A0A553SRZ9|A0A553SRZ9_NIACIFAD-dependentmonooxygenaseOS=NialliacirculansOX=1397GN=CEQ21_02100PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.8514404296875	2	507.308741	1012.60293	2.6162	0.0013272	2.8203	0.0014308	5.4365	0.002758	507.30833421972477	90.349	0.55534	90.349	90.101	90.656	0					32	13	4	0	0	0	0.027462	1	9652	9652		36.447	15.5	1	854840			10009	34317	8198	8207	10871	10871					0.0971313808852301
EVAKQLLGR	9	Unmodified	_EVAKQLLGR_					0	0	0		tr|A0A553SRZ9|A0A553SRZ9_NIACIFAD-dependentmonooxygenaseOS=NialliacirculansOX=1397GN=CEQ21_02100PE=4SV=1	tr|A0A553SRZ9|A0A553SRZ9_NIACIFAD-dependentmonooxygenaseOS=NialliacirculansOX=1397GN=CEQ21_02100PE=4SV=1	tr|A0A553SRZ9|A0A553SRZ9_NIACIFAD-dependentmonooxygenaseOS=NialliacirculansOX=1397GN=CEQ21_02100PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	507.308741	1012.60293	-1.13	-0.00057325	-2.2075	-0.0011199	-3.3375	-0.0016931	507.30646295128327	92.492	0.25469	89.949	89.771	90.026	-2.5425	-0.1998	-0.0031912	NaN	29.17	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14991			10010	34317	8198	8207							0.0971313808852301
EVAKVRLQT	9	Unmodified	_EVAKVRLQT_					0	0	0		ENSG00000140107|ENST00000361529|SLC25A47	ENSG00000140107|ENST00000361529|SLC25A47	ENSG00000140107|ENST00000361529|SLC25A47	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8070068359375	2	522.314023	1042.61349	-0.92668	-0.00048402	0.46862	0.00024477	-0.45806	-0.00023925	522.3141740282837	55.317	0.53395	55.317	55.107	55.641	0					22	12	3	0	0	0	0.027438	1	4553	4553		26.063	0	1	998700			10011	4824	8199	8208	10872	10872					0.0938912074293512
EVALGFPKT	9	Unmodified	_EVALGFPKT_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	OvCa9_classI_Rep3	3	481.8065490722656	2	481.271293	960.528032	-0.9797	-0.0004715	3.856	0.0018558	2.8763	0.0013843	481.2714976661784	86.749	0.50375	84.572	84.28	84.784	-2.1768					18	9	3	0	0	0	0.027462	1	5190	5190		26.693	3.6504	1	18427	+		10012	20219	8200	8209	10873	10873					0.04618955557270965
EVANAIEKGI	10	Unmodified	_EVANAIEKGI_					0	0	0		tr|A0A7D6ZXL5|A0A7D6ZXL5_9CLOTGlyceratekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23455PE=3SV=1	tr|A0A7D6ZXL5|A0A7D6ZXL5_9CLOTGlyceratekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23455PE=3SV=1	tr|A0A7D6ZXL5|A0A7D6ZXL5_9CLOTGlyceratekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23455PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.824951171875	2	522.290214	1042.56587	-1.1562	-0.00060388	-2.7494	-0.001436	-3.9056	-0.0020399	522.2901962135999	80.614	1.2214	77.903	77.665	78.887	-2.7106					35	24	3	0	0	0	0.026548	1	6709	6709		54.722	10.345	1	49752			10013	35885	8201	8210	10874	10874					0.04629421752088092
EVANAIEKGI	10	Unmodified	_EVANAIEKGI_					0	0	0		tr|A0A7D6ZXL5|A0A7D6ZXL5_9CLOTGlyceratekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23455PE=3SV=1	tr|A0A7D6ZXL5|A0A7D6ZXL5_9CLOTGlyceratekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23455PE=3SV=1	tr|A0A7D6ZXL5|A0A7D6ZXL5_9CLOTGlyceratekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23455PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	522.290214	1042.56587	0.638	0.00033322	-5.9509	-0.0031081	-5.3129	-0.0027749	522.7874992011148	79.588	1.0136	77.893	77.505	78.519	-1.6951	-0.0051399	-0.0017964	NaN	54.722	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19223			10014	35885	8201	8210							0.04629421752088092
EVANVRCKK	9	Unmodified	_EVANVRCKK_					0	0	0			REV__ENST00000354179.8_2_5:176675260-176678806:+|nuORF	REV__ENST00000354179.8_2_5:176675260-176678806:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.3155517578125	2	523.792401	1045.57025	-1.1159	-0.00058451	4.2956	0.00225	3.1797	0.0016655	524.2968857699805	55.757	1.2638	52.462	52.008	53.272	-3.2944					38	24	3	0	0	0	0.027462	1	3599	3599		53.351	0	1	49649	+		10015	24732	8202	8211	10875	10875					0.04928607694000675
EVAQHLAI	8	Unmodified	_EVAQHLAI_					0	0	0		ENST00000548474.2_1_12:57032966-57039057:-|nuORF	ENST00000548474.2_1_12:57032966-57039057:-|nuORF	ENST00000548474.2_1_12:57032966-57039057:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	440.2132568359375	2	440.747985	879.481417	0.42968	0.00018938	4.488	0.0019781	4.9177	0.0021675	440.74970569041864	114.46	1.7862	113.07	112.43	114.22	-1.3977					80	34	3	0	0	0	0.028476	1	10582	10582		21.702	0	1	83643			10016	13561	8203	8212	10876	10876					0.03685515725987898
EVAQLLLEL	9	Unmodified	_EVAQLLLEL_					0	0	0			REV__nc|ENSG00000101665|O15105-3|SMAD7	REV__nc|ENSG00000101665|O15105-3|SMAD7	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.62353515625	2	514.305332	1026.59611	-1.5129	-0.00077808	-0.9961	-0.0005123	-2.509	-0.0012904	514.3041531213591	64.069	0.81318	64.069	63.648	64.461	0					60	19	5	0	0	0	0.027446	1	5827	5827		35.152	0	1	1953100	+		10017	17511	8204	8213	10877	10877					0.08387780417297108
EVARRKPPT	9	Unmodified	_EVARRKPPT_					0	0	0			REV__ENST00000376964.3_1_X:47517084-47518326:-|nuORF	REV__ENST00000376964.3_1_X:47517084-47518326:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	527.2726440429688	2	527.311815	1052.60908	-1.2048	-0.00063528	0.65371	0.00034471	-0.55104	-0.00029057	527.8150522887071	97.008	0.3095	95.179	94.984	95.293	-1.8286					7	5	2	0	0	0	0.027462	1	6404	6404		23.042	4.7804	1	6425.2	+		10018	18792	8205	8214	10878	10878					0.08487656320039605
EVASDILGKL	10	Unmodified	_EVASDILGKL_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7;nc|ENSG00000118997|Q8WXX0-2|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.2863159179688	2	522.800414	1043.58628	-0.068867	-3.6004E-05	-1.0839	-0.00056666	-1.1528	-0.00060267	522.7996674476339	94.069	1.4601	92.969	92.539	93.999	-1.0995					77	28	4	0	0	0	0.026635	1	8520	8520		31.53	0	1	155910			10019	3337	8206	8215	10879	10879					0.06622592411918049
EVASLRKVLA	10	Unmodified	_EVASLRKVLA_					0	0	0			REV__tr|A0A7D7AB64|A0A7D7AB64_9CLOTCation-transportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14125PE=4SV=1	REV__tr|A0A7D7AB64|A0A7D7AB64_9CLOTCation-transportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14125PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	543.3370361328125	2	543.337498	1084.66044	-2.311	-0.0012556	1.9329	0.0010502	-0.37808	-0.00020543	543.3384008994826	62.758	1.5185	60.014	59.695	61.214	-2.7444					77	28	4	0	0	0	0.49558	1	4735	4735		54.776	1.8396	1	367110	+		10020	32675	8207	8216	10880	10880					0.12149980294088891
EVASRDPKL	9	Unmodified	_EVASRDPKL_					0	0	0		ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	MULTI-MSMS	OvCa9_classI_Rep3	3	507.78387451171875	2	507.782556	1013.55056	-0.88392	-0.00044884	0.21561	0.00010948	-0.66831	-0.00033936	507.7825696583364	81.399	1.875	79.077	78.286	80.161	-2.3226					96	36	4	0	0	0	0.2077	1	4533	4533		75.043	1.0686	1	1121100			10021	2506	8208	8217	10881	10881					0.04432554954905754
EVAVDERKL	9	Unmodified	_EVAVDERKL_					0	0	0			REV__tr|A0A7D6VSI4|A0A7D6VSI4_9CLOTShikimatedehydrogenase(NADP(+))OS=ClostridiumintestinaleOX=36845GN=aroEPE=3SV=1	REV__tr|A0A7D6VSI4|A0A7D6VSI4_9CLOTShikimatedehydrogenase(NADP(+))OS=ClostridiumintestinaleOX=36845GN=aroEPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.7962036132812	2	529.795663	1057.57677	2.3241	0.0012313	-0.20466	-0.00010843	2.1194	0.0011229	529.795452788595	76.091	0.68465	76.091	75.874	76.558	0					37	16	3	0	0	0	0.27001	1	7633	7633		66.429	0.6261	1	2731000	+		10022	31505	8209	8218	10882	10882					0.05028824126384279
EVAVEDLDLI	10	Unmodified	_EVAVEDLDLI_					0	0	0		tr|A0A553STW1|A0A553STW1_NIACIFlavodoxinOS=NialliacirculansOX=1397GN=CEQ21_05790PE=3SV=1	tr|A0A553STW1|A0A553STW1_NIACIFlavodoxinOS=NialliacirculansOX=1397GN=CEQ21_05790PE=3SV=1	tr|A0A553STW1|A0A553STW1_NIACIFlavodoxinOS=NialliacirculansOX=1397GN=CEQ21_05790PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	558.2996215820312	2	558.295162	1114.57577	2.7711	0.0015471	4.2537	0.0023748	7.0248	0.0039219	558.2975158837085	121.64	1.8468	121.64	121.34	123.18	0					95	39	3	0	0	0	0.42962	1	14075	14075		64.207	0.901	1	4926200			10023	34542	8210	8219	10883	10883					0.023065649668296828
EVAVKKLNP	9	Unmodified	_EVAVKKLNP_					0	0	0		ZDBF2|p.G2318Rfs*12|1|0.09|ENSG00000204186|chr2:206311479-206311480|-/AGAGCTGTGGATATAAT|frameshift_variant;ENSG00000204186|ENST00000374423|ZDBF2	ZDBF2|p.G2318Rfs*12|1|0.09|ENSG00000204186|chr2:206311479-206311480|-/AGAGCTGTGGATATAAT|frameshift_variant	ZDBF2|p.G2318Rfs*12|1|0.09|ENSG00000204186|chr2:206311479-206311480|-/AGAGCTGTGGATATAAT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.7358093261719	2	499.305667	996.596781	2.4487	0.0012226	-0.37343	-0.00018646	2.0753	0.0010362	499.3055253003343	75.885	0.39255	75.885	75.723	76.115	0					19	9	4	0	0	0	0.027462	1	7612	7612		15.642	0	1	640100			10024	8955	8211	8220	10884	10884					0.09834619856985682
EVAYNLLVN	9	Unmodified	_EVAYNLLVN_					0	0	0		ENSG00000127252|ENST00000264735|PLAAT1;nc|ENSG00000127252|Q9HDD0-2|PLAAT1	ENSG00000127252|ENST00000264735|PLAAT1	ENSG00000127252|ENST00000264735|PLAAT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.28271484375	2	517.779482	1033.54441	0.86489	0.00044782	1.6813	0.00087055	2.5462	0.0013184	518.281671868075	67.751	1.9638	64.261	63.888	65.852	-3.4902					131	39	4	0	0	0	0.31747	1	4975	4975		60.972	0	1	4272300			10025	3823	8212	8221	10885	10885					0.028980367233771176
EVAYWYIL	8	Unmodified	_EVAYWYIL_					0	0	0		ENSG00000185010|ENST00000360256|F8	ENSG00000185010|ENST00000360256|F8	ENSG00000185010|ENST00000360256|F8	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.3346557617188	2	528.773668	1055.53278	-0.74995	-0.00039655	-3.6372	-0.0019233	-4.3871	-0.0023198	528.7716563261811	97.679	2.0382	95.92	95.209	97.247	-1.7595					120	39	4	0	0	0	0.028476	1	6440	6440		44.531	0	1	564260			10026	8212	8213	8222	10886	10886					0.007238397000492114
EVCSSGSFLH	10	Unmodified	_EVCSSGSFLH_					0	0	0			REV__ENST00000470052.5_1_10:122611372-122611564:+|nuORF	REV__ENST00000470052.5_1_10:122611372-122611564:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.2677612304688	2	533.237124	1064.45969	-0.79347	-0.00042311	0.68521	0.00036538	-0.10826	-5.7729E-05	533.2374166421982	56.847	0.66101	53.502	53.324	53.985	-3.3449					19	12	2	0	0	0	0.026665	1	3647	3647		42.396	10.441	1	69291	+		10027	26254	8214	8223	10887	10887					-0.06995657084871709
EVCVRAKVL	9	Unmodified	_EVCVRAKVL_					0	0	0		ENST00000361112.6_1_17:33849522-33849741:-|nuORF	ENST00000361112.6_1_17:33849522-33849741:-|nuORF	ENST00000361112.6_1_17:33849522-33849741:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	508.7976379394531	2	508.799694	1015.58484	-0.073799	-3.7549E-05	-3.3685	-0.0017139	-3.4423	-0.0017514	508.79781426148145	110.04	1.2366	109.86	109.56	110.8	-0.17236					63	24	4	0	0	0	0.40667	1	10338	10338		51.335	1.8939	1	341650			10028	10783	8215	8224	10888	10888					0.07766679842154645
EVDAVDINL	9	Unmodified	_EVDAVDINL_					0	0	0			REV__ENSG00000166200|ENST00000388901|COPS2	REV__ENSG00000166200|ENST00000388901|COPS2	MULTI-SECPEP	OvCa9_classI_Rep2	2	494.29461669921875	2	494.253297	986.492041	1.6374	0.00080931	-1.6598	-0.00082038	-0.022407	-1.1075E-05	494.25244625682456	91.216	1.4492	89.981	89.193	90.642	-1.2355					51	27	2	0	0	0	0.027433	1	8044	8044		51.335	18.523	1	126440	+		10029	21166	8216	8225	10889	10889					-0.001745464102555161
EVDDRRLL	8	Unmodified	_EVDDRRLL_					0	0	0			REV__ENST00000431339.1_1_X:73326627-73327404:+|nuORF	REV__ENST00000431339.1_1_X:73326627-73327404:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.80322265625	2	508.28018	1014.54581	-0.15087	-7.6685E-05	-1.0766	-0.00054722	-1.2275	-0.00062391	508.78082858968116	47.338	0.39131	47.338	47.03	47.422	0					17	8	3	0	0	0	0.028476	1	3368	3368		35.618	2.1027	1	74682	+		10030	20085	8217	8226	10890	10890					0.03911670812135526
EVDEHCLRRS	10	Unmodified	_EVDEHCLRRS_					0	0	0			REV__ENST00000595279.1_1_19:3959101-3961233:-|nuORF	REV__ENST00000595279.1_1_19:3959101-3961233:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	415.2133483886719	3	415.199783	1242.57752	-0.92176	-0.00038271	-1.8074	-0.00075043	-2.7291	-0.0011331	415.1999840374358	43.618	0.51295	40.611	40.378	40.891	-3.0074					14	9	3	0	0	0	0.026843	1	2132	2132		19.263	0	1	31163	+		10031	21295	8218	8227	10891	10891					-0.034067044962284854
EVDEYRRHWWR	11	Unmodified	_EVDEYRRHWWR_					0	0	0		nc|ENSG00000010072|Q9H040-3|SPRTN;nc|ENSG00000010072|Q9H040-2|SPRTN;SPRTN|p.L272Tfs*8|1|0.15|ENSG00000010072|chr1:231352701-231352702|-/A|frameshift_variant;ENSG00000010072|ENST00000295050|SPRTN	nc|ENSG00000010072|Q9H040-3|SPRTN	nc|ENSG00000010072|Q9H040-3|SPRTN	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.930908203125	3	544.599046	1630.77531	-0.63255	-0.00034449	-1.7921	-0.00097596	-2.4246	-0.0013205	544.5978491512745	21.359	1.2298	20.02	19.697	20.927	-1.3386					64	24	4	0	0	0	0.72582	1	170	170		3.4087	0.19739	1	141150			10032	937	8219	8228	10892	10892					-0.014849422420638803
EVDKNGKDLKE	11	Unmodified	_EVDKNGKDLKE_					0	0	0		VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant;nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;VCAN|p.Q2143Kfs*20|1|0.07|ENSG00000038427|chr5:83539428-83539429|-/AAAAAGAAGAA|frameshift_variant;VCAN|p.G2239Afs*2|1|0.05|ENSG00000038427|chr5:83539715-83539715|A/-|frameshift_variant;nc|ENSG00000038427|P13611-3|VCAN;VCAN|p.G775Vfs*21|1|0.12|ENSG00000038427|chr5:83520629-83520630|-/TTGAT|frameshift_variant;nc|ENSG00000038427|P13611-4|VCAN	VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant	VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	637.8330688476562	2	637.832974	1273.6514	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.21	1	124.21	123.71	124.71	0								0	0	0	0.18306	1	14333	14333		47.96	3.5823	1				10033	1099	8220	8229	10893	10893					0.025515421470799993
EVDKVKALL	9	Unmodified	_EVDKVKALL_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.3028259277344	2	507.813325	1013.6121	-0.95864	-0.00048681	2.7095	0.0013759	1.7508	0.0008891	507.814771047912	92.085	0.91099	89.542	88.962	89.873	-2.5425					20	17	2	0	0	0	0.027462	1	7927	7927		31.634	6.1841	1	30983			10034	4112	8221	8230	10894	10894					0.10583486654184071
EVDLDLIKL	9	Unmodified	_EVDLDLIKL_					0	0	0		tr|A0A7D6ZK86|A0A7D6ZK86_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11595PE=4SV=1	tr|A0A7D6ZK86|A0A7D6ZK86_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11595PE=4SV=1	tr|A0A7D6ZK86|A0A7D6ZK86_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11595PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.311279296875	2	529.310615	1056.60668	-0.8141	-0.00043091	-2.0113	-0.0010646	-2.8254	-0.0014955	529.3095098056866	59.421	0.82835	59.421	59.011	59.839	0					46	21	3	0	0	0	0.40667	1	5125	5125		51.335	1.8939	1	1389900			10035	35659	8222	8231	10895	10895					0.08063763071709218
EVDLHSIAGP	10	Unmodified	_EVDLHSIAGP_					0	0	0		ENSG00000115904|ENST00000402219|SOS1	ENSG00000115904|ENST00000402219|SOS1	ENSG00000115904|ENST00000402219|SOS1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.7781372070312	2	519.266739	1036.51892	-0.48808	-0.00025344	-0.24912	-0.00012936	-0.7372	-0.0003828	519.2665327216324	79.119	0.90224	76.368	76.132	77.034	-2.7514					31	18	3	0	0	0	0.026752	1	6464	6464		35.618	0.46626	1	123030			10036	3136	8223	8232	10896	10896					0.002125622009543804
EVDLHSIAGP	10	Unmodified	_EVDLHSIAGP_					0	0	0		ENSG00000115904|ENST00000402219|SOS1	ENSG00000115904|ENST00000402219|SOS1	ENSG00000115904|ENST00000402219|SOS1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	519.266739	1036.51892	1.7736	0.00092099	0.87988	0.00045689	2.6535	0.0013779	519.2669618686301	76.327	0.60235	76.327	76.115	76.718	0	-0.020648	0.0006641	NaN	44.117	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1013000			10037	3136	8223	8232							0.002125622009543804
EVDLTFFPP	9	Unmodified	_EVDLTFFPP_					0	0	0			REV__ENSG00000165832|ENST00000298746|TRUB1	REV__ENSG00000165832|ENST00000298746|TRUB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.7496948242188	2	532.768583	1063.52261	1.7559	0.00093547	1.4639	0.0007799	3.2197	0.0017154	532.7689580191799	122.67	0.50432	122.67	122.4	122.91	0					19	10	2	0	0	0	0.027441	1	14152	14152		45.952	0	1	85031	+		10038	21127	8224	8233	10897	10897					-0.006607680251818238
EVDPIRKP	8	Unmodified	_EVDPIRKP_					0	0	0		ENST00000471939.5_1_9:130507302-130536417:-|nuORF;ENSG00000095370|ENST00000314830|SH2D3C	ENST00000471939.5_1_9:130507302-130536417:-|nuORF	ENST00000471939.5_1_9:130507302-130536417:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	477.80340576171875	2	477.274367	952.53418	-0.41599	-0.00019854	0.18104	8.6407E-05	-0.23495	-0.00011213	477.27436139819156	86.296	1.5586	84.075	83.536	85.095	-2.2204					65	30	3	0	0	0	0.028476	1	5173	5173		21.96	0	1	233750			10039	1926	8225	8234	10898	10898					0.056014737887949195
EVDRMFRFMRI	11	Unmodified	_EVDRMFRFMRI_					0	0	0			REV__ENST00000536249.1_1_12:6861449-6861527:-|nuORF	REV__ENST00000536249.1_1_12:6861449-6861527:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.8962097167969	3	500.591846	1498.75371	-0.39009	-0.00019528	-2.5315	-0.0012672	-2.9216	-0.0014625	500.59076398628855	73.479	1.3383	70.992	70.282	71.62	-2.4873					53	26	3	0	0	0	0.025767	1	3585	3585		37.508	13.276	1	29726	+		10040	27294	8226	8235	10899	10899					0.02428213413350022
EVDRMFRFMRI	11	Unmodified	_EVDRMFRFMRI_					0	0	0			REV__ENST00000536249.1_1_12:6861449-6861527:-|nuORF	REV__ENST00000536249.1_1_12:6861449-6861527:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	500.591846	1498.75371	-0.85473	-0.00042787	-2.4303	-0.0012166	-3.285	-0.0016445	500.59033817791607	74.062	0.80606	70.832	70.628	71.434	-3.2308	-0.080068	0.00011626	NaN	37.508	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33105	+		10041	27294	8226	8235							0.02428213413350022
EVDSWSLGVL	10	Unmodified	_EVDSWSLGVL_					0	0	0		NUAK2|p.I548Lfs*12|1|0.11|ENSG00000163545|chr1:205303695-205303696|-/CCCAGCTACTAGGGAGGCTGAG|frameshift_variant;ENSG00000163545|ENST00000367157|NUAK2	NUAK2|p.I548Lfs*12|1|0.11|ENSG00000163545|chr1:205303695-205303696|-/CCCAGCTACTAGGGAGGCTGAG|frameshift_variant	NUAK2|p.I548Lfs*12|1|0.11|ENSG00000163545|chr1:205303695-205303696|-/CCCAGCTACTAGGGAGGCTGAG|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	552.7796630859375	2	552.782222	1103.54989	1.5144	0.00083715	-4.1542	-0.0022964	-2.6397	-0.0014592	552.7799964255425	98.399	1.3258	98.399	98.121	99.447	0					110	31	6	0	0	0	0.20267	2	10945	10913;10945		94.006	10.428	1	84752000			10042	6324	8227	8236	10900;10901	10901					0.0022571551519376953
EVEAAIVVL	9	Unmodified	_EVEAAIVVL_					0	0	0		ENST00000462213.2_1_3:124396410-124398505:+|nuORF	ENST00000462213.2_1_3:124396410-124398505:+|nuORF	ENST00000462213.2_1_3:124396410-124398505:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	471.780029296875	2	471.778951	941.543348	2.0676	0.00097545	0.2446	0.0001154	2.3122	0.0010909	471.7788986605064	134.22	0.78787	134.22	133.86	134.65	0					42	16	4	0	0	0	0.11842	2	15621	15621;15647		92.191	19.556	1	848840			10043	12196	8228	8237	10902;10903	10902					0.070238223544834
EVEAIRIL	8	Unmodified	_EVEAIRIL_					0	0	0		nc|ENSG00000179057|Q8N9C0|IGSF22;ENSG00000179057|ENST00000513874|IGSF22	nc|ENSG00000179057|Q8N9C0|IGSF22	nc|ENSG00000179057|Q8N9C0|IGSF22	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.2658386230469	2	471.784567	941.554582	0.40552	0.00019132	-0.94979	-0.0004481	-0.54427	-0.00025678	471.78424700056667	103.32	1.8842	101.12	100.36	102.24	-2.1994					47	35	3	0	0	0	0.028476	1	9288	9288		53.351	2.016	1	95149			10044	7799	8229	8238	10904	10904					0.08146644448606821
EVEAIRIL	8	Unmodified	_EVEAIRIL_					0	0	0		nc|ENSG00000179057|Q8N9C0|IGSF22;ENSG00000179057|ENST00000513874|IGSF22	nc|ENSG00000179057|Q8N9C0|IGSF22	nc|ENSG00000179057|Q8N9C0|IGSF22	MULTI-MATCH	OvCa9_classI_Rep2	2		2	471.784567	941.554582	-1.2298	-0.00058019	0.60044	0.00028328	-0.62933	-0.00029691	471.78484872747117	101.76	1.4346	101	100.62	102.05	-0.76401	-0.059433	0.000812	NaN	53.351	36	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76024			10045	7799	8229	8238							0.08146644448606821
EVEALLLPE	9	Unmodified	_EVEALLLPE_					0	0	0		SERPINA3|p.M290L|1|0.1|ENSG00000196136|chr14:94619419-94619419|A/C|missense_variant	SERPINA3|p.M290L|1|0.1|ENSG00000196136|chr14:94619419-94619419|A/C|missense_variant	SERPINA3|p.M290L|1|0.1|ENSG00000196136|chr14:94619419-94619419|A/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.3146057128906	2	506.78169	1011.54883	-1.3635	-0.000691	-3.9168	-0.001985	-5.2803	-0.002676	507.28211029335876	117.15	1.0382	117.02	116.42	117.46	-0.12868					32	20	2	0	0	0	0.027447	1	11221	11221		39.253	3.6345	1	22012			10046	32811	8230	8239	10905	10905					0.04351501146288683
EVEEGLVKGVL	11	Unmodified	_EVEEGLVKGVL_					0	0	0			REV__tr|A0A7D7A3L8|A0A7D7A3L8_9CLOTIsoleucine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=ileSPE=3SV=1	REV__tr|A0A7D7A3L8|A0A7D7A3L8_9CLOTIsoleucine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=ileSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	585.7079467773438	2	586.332079	1170.6496	-1.3814	-0.00080996	-4.1648	-0.002442	-5.5462	-0.0032519	586.3293787971925	54.205	1.1274	50.958	50.466	51.593	-3.2474					39	21	3	0	0	0	0.025528	1	3415	3415		42.864	10.052	1	85253	+		10047	32589	8231	8240	10906	10906					0.07110533129161922
EVEEIVDDL	9	Unmodified	_EVEEIVDDL_					0	0	0			REV__nc|ENSG00000127022|P27824-2|CANX	REV__nc|ENSG00000127022|P27824-2|CANX	MULTI-SECPEP	OvCa9_classI_Rep2	2	530.3080444335938	2	530.755869	1059.49719	-2.0705	-0.001099	1.9619	0.0010413	-0.10863	-5.7658E-05	530.7568286670707	117.95	0.64543	117.8	117.59	118.23	-0.14755					16	12	2	0	0	0	0.027462	1	11293	11293		47.657	5.2612	1	14883	+		10048	18804	8232	8241	10907	10907					-0.030182873382955222
EVEERKAPP	9	Unmodified	_EVEERKAPP_					0	0	0			REV__nc|ENSG00000064300|P08138-2|NGFR	REV__nc|ENSG00000064300|P08138-2|NGFR	MULTI-SECPEP	OvCa9_classI_Rep3	3	527.8709106445312	2	527.780013	1053.54547	-0.68568	-0.00036189	1.1093	0.00058546	0.42361	0.00022357	527.7806411106117	118.34	1.883	117.31	116.19	118.07	-1.0324					55	37	2	0	0	0	0.027462	1	9008	9008		31.955	8.4322	1	119410	+		10049	16768	8233	8242	10908	10908					0.02084251092287559
EVEERKAPP	9	Unmodified	_EVEERKAPP_					0	0	0			REV__nc|ENSG00000064300|P08138-2|NGFR	REV__nc|ENSG00000064300|P08138-2|NGFR	MULTI-MATCH	OvCa9_classI_Rep2	2		2	527.780013	1053.54547	-1.5233	-0.00080398	2.0813	0.0010985	0.55799	0.00029449	527.7810216776272	117.38	1.1898	117.25	116.91	118.1	-0.12868	-0.026152	0.00050582	NaN	31.955	37	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82415	+		10050	16768	8233	8242							0.02084251092287559
EVEGRDLLR	9	Unmodified	_EVEGRDLLR_					0	0	0		ENST00000425141.5_1_2:220498093-220506447:+|nuORF;nc|ENSG00000114923|P48751-2|SLC4A3;ENSG00000114923|ENST00000358055|SLC4A3;nc|ENSG00000114923|P48751-3|SLC4A3	ENST00000425141.5_1_2:220498093-220506447:+|nuORF	ENST00000425141.5_1_2:220498093-220506447:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	543.7994384765625	2	543.798737	1085.58292	-0.27846	-0.00015143	-0.8367	-0.000455	-1.1152	-0.00060642	543.798168443756	65.251	1.2563	65.251	64.955	66.212	0					85	31	5	0	0	0	0.3076	1	5962	5962		62.107	0	1	36400000			10051	3049	8234	8243	10909	10909					0.0435534235787145
EVEGRRRLV	9	Unmodified	_EVEGRRRLV_					0	0	0		ENSG00000253368|ENST00000522111|TRNP1	ENSG00000253368|ENST00000522111|TRNP1	ENSG00000253368|ENST00000522111|TRNP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.8270874023438	2	557.327996	1112.64144	1.1522	0.00064217	-2.0961	-0.0011682	-0.94389	-0.00052605	557.328393946559	109.81	1.5797	108.21	107.8	109.38	-1.6011					74	29	3	0	0	0	0.55011	1	10102	10102		37.812	0.65241	1	372990			10052	9431	8235	8244	10910	10910					0.08962443723021352
EVEIPKGHL	9	Unmodified	_EVEIPKGHL_					0	0	0			REV__ENST00000476938.5_1_7:23401151-23509630:-|nuORF	REV__ENST00000476938.5_1_7:23401151-23509630:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.786376953125	2	511.287474	1020.5604	2.37	0.0012117	0.033021	1.6883E-05	2.403	0.0012286	511.28712606924756	84.763	0.94891	84.763	84.303	85.252	0					31	22	2	0	0	0	0.027462	1	8810	8810		21.96	0	1	644310	+		10053	19369	8236	8245	10911	10911					0.050937429602981865
EVEKELSLL	9	Unmodified	_EVEKELSLL_					0	0	0			REV__nc|ENSG00000079805|P50570-3|DNM2	REV__nc|ENSG00000079805|P50570-3|DNM2	MULTI-MSMS	OvCa9_classI_Rep3	3	530.3007202148438	2	530.300247	1058.58594	-0.80786	-0.00042841	1.0223	0.00054212	0.21443	0.00011371	530.301047020851	100.77	1.9495	99.167	98.755	100.7	-1.6053					71	37	4	0	0	0	0.14998	1	6866	6866		84.916	0	1	580430	+		10054	17045	8237	8246	10912	10912					0.05899172692056709
EVEKRRRL	8	Unmodified	_EVEKRRRL_					0	0	0		ENSG00000198883|ENST00000535214|PNMA5	ENSG00000198883|ENST00000535214|PNMA5	ENSG00000198883|ENST00000535214|PNMA5	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.7888793945312	2	543.330539	1084.64652	2.5206	0.0013695	1.7287	0.00093927	4.2493	0.0023088	543.3309197443338	121.41	0.36886	121.41	121.25	121.61	0					16	7	3	0	0	0	0.028476	1	13967	13967		50.025	4.0726	1	88638			10055	8898	8238	8247	10913	10913					0.10758747585668971
EVELIKYEP	9	Unmodified	_EVELIKYEP_					0	0	0			REV__tr|A0A7D7AH97|A0A7D7AH97_9CLOTSerinehydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11635PE=4SV=1	REV__tr|A0A7D7AH97|A0A7D7AH97_9CLOTSerinehydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11635PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.3237915039062	2	560.300247	1118.58594	-0.25401	-0.00014232	2.4317	0.0013625	2.1777	0.0012202	560.3019680351539	36.439	0.40509	36.439	36.257	36.662	0					12	8	2	0	0	0	0.027462	1	1934	1934		15.642	0	1	54075	+		10056	32728	8239	8248	10914	10914					0.03139172692044667
EVELLPSPCL	10	Unmodified	_EVELLPSPCL_					0	0	0			REV__ENST00000402285.7_1_2:55459211-55459976:+|nuORF	REV__ENST00000402285.7_1_2:55459211-55459976:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7518310546875	2	550.288825	1098.5631	1.4247	0.00078402	-2.83	-0.0015573	-1.4053	-0.0007733	550.287175334846	103.04	0.70545	103.04	102.85	103.55	0					28	16	3	0	0	0	0.026871	1	11552	11552		37.159	0	1	796670	+		10057	25418	8240	8249	10915	10915					0.017758303029268063
EVEMAVEES	9	Unmodified	_EVEMAVEES_					0	0	0			REV__SF3A1|p.E324A|1|0.04|ENSG00000099995|chr22:30341792-30341792|T/G|missense_variant	REV__SF3A1|p.E324A|1|0.04|ENSG00000099995|chr22:30341792-30341792|T/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	512.254638671875	2	511.720972	1021.42739	-1.0118	-0.00051777	-0.18786	-9.6134E-05	-1.1997	-0.0006139	512.2244031858845	86.777	0.25284	84.601	84.481	84.734	-2.1768					6	4	2	0	0	0	0.027462	1	5170	5170		6.3127	0	1	23250	+		10058	29356	8241	8250	10916	10916					-0.08246489278531044
EVEMLRTVL	9	Unmodified	_EVEMLRTVL_					0	0	0			REV__ENST00000475665.5_1_3:49896753-49898557:-|nuORF	REV__ENST00000475665.5_1_3:49896753-49898557:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.8263549804688	2	545.302267	1088.58998	1.6474	0.00089835	-3.0166	-0.001645	-1.3692	-0.00074663	545.8023718466682	92.173	0.20845	92.173	92.052	92.26	0					6	4	2	0	0	0	0.027462	1	9955	9955		44.377	5.1244	1	66004	+		10059	20935	8242	8251	10917	10917					0.049229389141146385
EVENVCQTL	9	Unmodified	_EVENVCQTL_					0	0	0		ENSG00000151388|ENST00000504830|ADAMTS12;nc|ENSG00000151388|P58397-3|ADAMTS12	ENSG00000151388|ENST00000504830|ADAMTS12	ENSG00000151388|ENST00000504830|ADAMTS12	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.282470703125	2	517.744782	1033.47501	0.73762	0.0003819	-2.6796	-0.0013873	-1.9419	-0.0010054	517.743387600398	67.393	0.54568	63.902	63.64	64.186	-3.4902					20	10	3	0	0	0	0.027418	1	4963	4963		62.107	7.3311	1	40988			10060	5550	8243	8252	10918	10918					-0.040387902876773296
EVEPFLSW	8	Unmodified	_EVEPFLSW_					0	0	0		ENSG00000017483|ENST00000620913|SLC38A5;nc|ENSG00000017483|Q8WUX1-2|SLC38A5;SLC38A5|p.P436L|1|0.48|ENSG00000017483|chrX:48459546-48459546|G/A|missense_variant	ENSG00000017483|ENST00000620913|SLC38A5	ENSG00000017483|ENST00000620913|SLC38A5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	504.2797546386719	2	503.74765	1005.48075	-1.3141	-0.00066198	0.017624	8.878E-06	-1.2965	-0.0006531	503.74781843251947	50.93	0.80647	47.756	47.516	48.323	-3.1734					35	15	3	0	0	0	0.028476	1	2953	2953		60.294	6.9425	1	70557			10061	1009	8244	8253	10919	10919					-0.021773237137153956
EVEPSASRIA	10	Unmodified	_EVEPSASRIA_					0	0	0		tr|A0A553SRL4|A0A553SRL4_NIACIMn2+/Zn2+ABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_01185PE=3SV=1	tr|A0A553SRL4|A0A553SRL4_NIACIMn2+/Zn2+ABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_01185PE=3SV=1	tr|A0A553SRL4|A0A553SRL4_NIACIMn2+/Zn2+ABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_01185PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.3274536132812	2	529.77747	1057.54039	0.026488	1.4033E-05	2.3717	0.0012565	2.3982	0.0012705	529.7792588611064	67.435	0.94106	67.435	66.939	67.88	0					42	23	4	0	0	0	0.026782	1	6240	6240		37.812	21.338	1	3826200			10062	34274	8245	8254	10920	10920					0.013919472296720414
EVEPYVLK	8	Unmodified	_EVEPYVLK_					0	0	0			REV__ENSG00000156222|ENST00000394573|SLC28A1	REV__ENSG00000156222|ENST00000394573|SLC28A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.80133056640625	2	488.771126	975.527698	-0.38741	-0.00018936	-1.9116	-0.00093432	-2.299	-0.0011237	488.76969269098277	64.476	0.49977	64.476	64.21	64.71	0					26	11	4	0	0	0	0.028476	1	5891	5891		63.306	13.77	1	1987600	+		10063	20468	8246	8255	10921	10921					0.03895535837432362
EVEQYRREREH	11	Unmodified	_EVEQYRREREH_					0	0	0		ENST00000481998.1_1_6:31513879-31514336:-|nuORF;nc|ENSG00000213760|O95670-3|ATP6V1G2;ENSG00000213760|ENST00000303892|ATP6V1G2;ENST00000475917.1_1_6:31510065-31514336:-|nuORF	ENST00000481998.1_1_6:31513879-31514336:-|nuORF	ENST00000481998.1_1_6:31513879-31514336:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	510.2928466796875	3	510.918444	1529.7335	-0.15423	-7.8798E-05	-3.4706	-0.0017732	-3.6249	-0.001852	510.9170067711529	78.905	0.39	76.565	76.315	76.705	-2.3399					10	7	2	0	0	0	0.026364	1	4231	4231		9.2118	0	1	17669			10064	9145	8247	8256	10922	10922					-0.01017542721274367
EVERAAREL	9	Unmodified	_EVERAAREL_					0	0	0		ENST00000337530.10_3_9:115408056-115421751:+|nuORF	ENST00000337530.10_3_9:115408056-115421751:+|nuORF	ENST00000337530.10_3_9:115408056-115421751:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.819580078125	2	536.790912	1071.56727	0.51073	0.00027416	-0.02846	-1.5277E-05	0.48227	0.00025888	536.7907505029461	67.75	0.68254	64.259	64.037	64.72	-3.4902					28	13	3	0	0	0	0.027433	1	5045	5045		60.972	13.315	1	70073			10065	10526	8248	8257	10923	10923					0.034350558408505094
EVERILDRRIK	11	Unmodified	_EVERILDRRIK_					0	0	0			REV__nc|ENSG00000144712|O75155-2|CAND2	REV__nc|ENSG00000144712|O75155-2|CAND2	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.2874755859375	3	476.287808	1425.8416	0.32315	0.00015391	-0.7176	-0.00034179	-0.39445	-0.00018787	476.2874255337455	22.278	1.0813	20.939	20.675	21.757	-1.3386					78	26	4	0	0	0	0.69424	1	268	268		31.634	6.5083	1	162610	+		10066	19928	8249	8258	10924	10924					0.14570873599950573
EVERVRRS	8	Unmodified	_EVERVRRS_					0	0	0		ENST00000492321.5_1_7:44118242-44122109:-|nuORF;nc|ENSG00000122678|Q9NP87-2|POLM;ENSG00000122678|ENST00000242248|POLM;nc|ENSG00000122678|Q9NP87-3|POLM	ENST00000492321.5_1_7:44118242-44122109:-|nuORF	ENST00000492321.5_1_7:44118242-44122109:-|nuORF	MSMS	OvCa99_classI_Rep5	1	515.7936401367188	2	515.791247	1029.56794	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.817	1	55.817	55.317	56.317	0								0	0	0	0.30129	1	4592	4592		63.306	5.06	1				10067	3547	8250	8259	10925	10925					0.05433895280566503
EVETEQIL	8	Unmodified	_EVETEQIL_					0	0	0		ENSG00000112367|ENST00000230124|FIG4;ENST00000368941.1_1_6:110056492-110064519:+|nuORF	ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.28985595703125	2	480.747847	959.481142	-0.49797	-0.0002394	3.525	0.0016946	3.027	0.0014552	480.7507351030421	94.904	0.15008	92.435	92.31	92.46	-2.4685					4	2	2	0	0	0	0.028476	1	8324	8324		82.305	5.4584	1	7527			10068	2902	8251	8260	10926	10926					-0.0002194878450154647
EVETQKLAY	9	Unmodified	_EVETQKLAY_					0	0	0		ENSG00000117724|ENST00000366955|CENPF;CENPF|p.E1182Vfs*21|1|0.46|ENSG00000117724|chr1:214641879-214641882|AGAG/-|frameshift_variant	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-SECPEP	OvCa9_classI_Rep2	2	540.7642822265625	2	540.782222	1079.54989	-1.0265	-0.0005551	1.4395	0.00077847	0.41306	0.00022337	540.78266724631	77.386	0.25874	75.597	75.416	75.675	-1.7894					7	4	2	0	0	0	0.027462	1	6438	6438		23.042	0	1	13562			10069	3276	8252	8261	10927	10927					0.013297155151803963
EVEVVGWPY	9	Unmodified	_EVEVVGWPY_					0	0	0			REV__ENST00000481500.1_1_2:242277175-242285749:+|nuORF	REV__ENST00000481500.1_1_2:242277175-242285749:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.2781372070312	2	539.266207	1076.51786	-0.65046	-0.00035077	-0.014517	-7.8283E-06	-0.66498	-0.0003586	539.2660499324256	35.092	0.28837	35.092	34.957	35.246	0					9	5	2	0	0	0	0.027462	1	1748	1748		17.365	0	1	86328	+		10070	21368	8253	8262	10928	10928					-0.017336521679453654
EVFKALTDN	9	Unmodified	_EVFKALTDN_					0	0	0		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;TSC2|p.R799Afs*25|1|0.29|ENSG00000103197|chr16:2074238-2074253|CCGCTGTGCCAGCCAG/-|frameshift_variant;TSC2|p.V179Gfs*16|1|0.05|ENSG00000103197|chr16:2055455-2055456|-/GAGTGTACGGCATACACAC|frameshift_variant	nc|ENSG00000103197|P49815-7|TSC2;TSC2|p.V179Gfs*16|1|0.05|ENSG00000103197|chr16:2055455-2055456|-/GAGTGTACGGCATACACAC|frameshift_variant	nc|ENSG00000103197|P49815-7|TSC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.8177490234375	2	518.769114	1035.52368	-0.19314	-0.00010019	4.0808	0.002117	3.8876	0.0020168	518.771066572845	57.671	0.42102	57.671	57.438	57.859	0					15	9	2	0	0	0	0.027461	1	4832	4832		40.778	0	1	197820			10071	2293;36287	8254	8263	10929	10929					0.007334463437246086
EVFKQLEEI	9	Unmodified	_EVFKQLEEI_					0	0	0			REV__nc|ENSG00000136828|Q5JS13-4|RALGPS1	REV__nc|ENSG00000136828|Q5JS13-4|RALGPS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	568.3092041015625	2	567.805697	1133.59684	-1.3765	-0.00078159	1.4664	0.00083261	0.089861	5.1024E-05	568.3093196846492	107.63	1.3333	105.75	105.33	106.66	-1.8785					38	26	2	0	0	0	0.40667	1	9846	9846		51.335	5.3835	1	208820	+		10072	19409	8255	8264	10930	10930					0.035385750663408544
EVFKQMVN	8	Unmodified	_EVFKQMVN_					0	0	0			REV__ENST00000331327.4_1_5:139495366-139495495:+|nuORF	REV__ENST00000331327.4_1_5:139495366-139495495:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	496.7606201171875	2	497.754953	993.495352	-0.4783	-0.00023807	-3.934	-0.0019582	-4.4123	-0.0021962	497.75303739659523	74.058	0.78925	72.087	71.535	72.324	-1.9711					22	14	2	0	0	0	0.028476	1	6005	6005		27.882	2.3082	1	16380	+		10073	24534	8256	8265	10931	10931					-0.0016557483720589516
EVFKTRNFG	9	Unmodified	_EVFKTRNFG_					0	0	0			REV__tr|A0A553SFY7|A0A553SFY7_NIACINitroreductasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09740PE=3SV=1	REV__tr|A0A553SFY7|A0A553SFY7_NIACINitroreductasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09740PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.8401489257812	2	549.290548	1096.56654	2.0487	0.0011253	-2.2784	-0.0012515	-0.22967	-0.00012616	549.2871408916011	115.58	0.42529	115.58	115.35	115.77	0					15	8	2	0	0	0	0.027462	1	13231	13231		32.812	7.2384	1	49896	+		10074	29637	8257	8266	10932	10932					0.022122611917893664
EVFLIHLPY	9	Unmodified	_EVFLIHLPY_					0	0	0			REV__ENST00000482818.1_1_22:29726183-29727937:-|nuORF	REV__ENST00000482818.1_1_22:29726183-29727937:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.836181640625	2	565.815867	1129.61718	0.92705	0.00052454	-1.8785	-0.0010629	-0.95143	-0.00053833	565.8141893974883	141.41	0.45276	141.41	141.13	141.59	0					14	8	2	0	0	0	0.027462	1	16496	16496		25.45	0	1	49603	+		10075	17390	8258	8267	10933	10933					0.05755790516809611
EVFLITPKY	9	Unmodified	_EVFLITPKY_					0	0	0			REV__tr|A0A7D6VLQ0|A0A7D6VLQ0_9CLOTLsafamilyABC-FtyperibosomalprotectionproteinOS=ClostridiumintestinaleOX=36845GN=lsaPE=4SV=1	REV__tr|A0A7D6VLQ0|A0A7D6VLQ0_9CLOTLsafamilyABC-FtyperibosomalprotectionproteinOS=ClostridiumintestinaleOX=36845GN=lsaPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.3314208984375	2	555.3157	1108.61685	-0.48424	-0.00026891	-4.2714	-0.0023719	-4.7556	-0.0026409	555.3133087702613	92.594	1.1079	90.086	89.755	90.863	-2.5072					42	21	3	0	0	0	0.027462	1	8018	8018		29.15	4.9468	1	53492	+		10076	31119	8259	8268	10934	10934					0.06688370796950949
EVFNKIPKI	9	Unmodified	_EVFNKIPKI_					0	0	0		tr|A0A553SJR1|A0A553SJR1_NIACIasparaginesynthase(glutamine-hydrolyzing)OS=NialliacirculansOX=1397GN=asnBPE=3SV=1	tr|A0A553SJR1|A0A553SJR1_NIACIasparaginesynthase(glutamine-hydrolyzing)OS=NialliacirculansOX=1397GN=asnBPE=3SV=1	tr|A0A553SJR1|A0A553SJR1_NIACIasparaginesynthase(glutamine-hydrolyzing)OS=NialliacirculansOX=1397GN=asnBPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	544.3275146484375	2	544.329142	1086.64373	-0.59512	-0.00032394	-3.6815	-0.0020039	-4.2766	-0.0023279	544.3269649122908	39.412	0.43315	39.412	39.196	39.63	0					21	9	3	0	0	0	0.53483	1	2323	2323		39.253	5.0803	1	642430			10077	33534	8260	8269	10935	10935					0.10387479408132094
EVFRKKLK	8	Unmodified	_EVFRKKLK_					0	0	0		nc|ENSG00000156970|O60566-2|BUB1B;ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B	nc|ENSG00000156970|O60566-2|BUB1B	nc|ENSG00000156970|O60566-2|BUB1B	MULTI-SECPEP	OvCa9_classI_Rep3	3	524.7846069335938	2	524.337301	1046.66005	-0.53528	-0.00028066	-0.030928	-1.6217E-05	-0.5662	-0.00029688	524.3370788559781	98.736	0.72366	97.051	96.801	97.524	-1.685					24	13	2	0	0	0	0.028476	1	6608	6608		19.36	0	1	27306			10078	5866	8261	8270	10936	10936					0.1385860536488508
EVFTKQIQQ	9	Unmodified	_EVFTKQIQQ_					0	0	0		nc|ENSG00000128596|Q96JN2-2|CCDC136;ENSG00000128596|ENST00000297788|CCDC136;nc|ENSG00000128596|Q96JN2-4|CCDC136;nc|ENSG00000128596|Q96JN2-3|CCDC136	nc|ENSG00000128596|Q96JN2-2|CCDC136;nc|ENSG00000128596|Q96JN2-3|CCDC136	nc|ENSG00000128596|Q96JN2-2|CCDC136	MULTI-MSMS	OvCa99_classI_Rep5	1	560.8052368164062	2	560.803488	1119.59242	1.8207	0.0010211	3.9424	0.0022109	5.7631	0.0032319	560.8055147932859	144.6	1.5674	144.6	144.06	145.63	0					54	32	3	0	0	0	0.42676	1	16931	16931		49.442	0	1	173830			10079	3892;15006	8262	8271	10937	10937					0.03741110643431966
EVFVDIIVD	9	Unmodified	_EVFVDIIVD_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.V2563Sfs*5|1|0.19|ENSG00000083857|chr4:186618896-186618899|TCAC/-|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.3097534179688	2	524.78169	1047.54883	2.0014	0.0010503	4.0169	0.002108	6.0184	0.0031583	524.7857169110995	116.37	0.18413	116.37	116.23	116.42	0					5	3	2	0	0	0	0.027462	1	13315	13315		16.473	0	1	33373			10080	1705	8263	8272	10938	10938					0.02695501146308743
EVFVIIEKLI	10	Unmodified	_EVFVIIEKLI_					0	0	0			REV__ENSG00000169126|ENST00000305242|ODAD2	REV__ENSG00000169126|ENST00000305242|ODAD2	MULTI-SECPEP	OvCa9_classI_Rep2	2	401.8998107910156	3	401.58468	1201.73221	0.4624	0.00018569	-2.6441	-0.0010618	-2.1817	-0.00087614	401.5835311137541	50.457	0.69318	47.663	47.331	48.024	-2.794					26	13	3	0	0	0	0.026803	1	3239	3239		26.063	1.8316	1	19807	+		10081	21433	8264	8273	10939	10939					0.1394147492794673
EVFVIIEKLI	10	Unmodified	_EVFVIIEKLI_					0	0	0			REV__ENSG00000169126|ENST00000305242|ODAD2	REV__ENSG00000169126|ENST00000305242|ODAD2	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	401.58468	1201.73221	1.0323	0.00041454	-4.144	-0.0016642	-3.1117	-0.0012496	401.583177837349	50.912	0.45811	47.739	47.464	47.922	-3.1734	0.037887	-0.001447	NaN	26.063	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22490	+		10082	21433	8264	8273							0.1394147492794673
EVFYANKN	8	Unmodified	_EVFYANKN_					0	0	0			REV__tr|A0A553SSD1|A0A553SSD1_NIACICircadianclockproteinKaiCOS=NialliacirculansOX=1397GN=CEQ21_02800PE=4SV=1	REV__tr|A0A553SSD1|A0A553SSD1_NIACICircadianclockproteinKaiCOS=NialliacirculansOX=1397GN=CEQ21_02800PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.2791748046875	2	492.742899	983.471246	-0.21352	-0.00010521	0.48653	0.00023974	0.27302	0.00013453	492.74297658015263	104.34	0.83916	102.22	101.9	102.74	-2.1192					28	15	3	0	0	0	0.028476	1	9485	9485		38.806	0	1	36427	+		10083	30823	8265	8274	10940	10940					-0.02115091999246488
EVFYANKN	8	Unmodified	_EVFYANKN_					0	0	0			REV__tr|A0A553SSD1|A0A553SSD1_NIACICircadianclockproteinKaiCOS=NialliacirculansOX=1397GN=CEQ21_02800PE=4SV=1	REV__tr|A0A553SSD1|A0A553SSD1_NIACICircadianclockproteinKaiCOS=NialliacirculansOX=1397GN=CEQ21_02800PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	492.742899	983.471246	-0.37456	-0.00018456	0.63449	0.00031264	0.25993	0.00012808	492.7430541469594	102.95	0.69003	102.26	102.03	102.72	-0.68459	0.020809	0.00020993	NaN	38.806	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33218	+		10084	30823	8265	8274							-0.02115091999246488
EVFYANKN	8	Unmodified	_EVFYANKN_					0	0	0			REV__tr|A0A553SSD1|A0A553SSD1_NIACICircadianclockproteinKaiCOS=NialliacirculansOX=1397GN=CEQ21_02800PE=4SV=1	REV__tr|A0A553SSD1|A0A553SSD1_NIACICircadianclockproteinKaiCOS=NialliacirculansOX=1397GN=CEQ21_02800PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	492.742899	983.471246	-0.098142	-4.8359E-05	0.13532	6.6679E-05	0.037179	1.832E-05	492.7428282322914	103.68	0.8396	102.25	101.92	102.76	-1.4347	0.0042019	-0.000282	NaN	38.806	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41708	+		10085	30823	8265	8274							-0.02115091999246488
EVGELRLTP	9	Unmodified	_EVGELRLTP_					0	0	0			REV__ERC1-CACNA1C|23|fusion	REV__ERC1-CACNA1C|23|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.74896240234375	2	507.284931	1012.55531	-0.45058	-0.00022857	0.41853	0.00021231	-0.032051	-1.6259E-05	507.28504799667695	78.255	0.78661	76.515	75.829	76.615	-1.7398					28	14	2	0	0	0	0.027462	1	6510	6510		23.042	3.6825	1	48024	+		10086	28114	8266	8275	10941	10941					0.04953439097653245
EVGFNKNVFLL	11	Unmodified	_EVGFNKNVFLL_					0	0	0			REV__ENSG00000115365|ENST00000450366|LANCL1	REV__ENSG00000115365|ENST00000450366|LANCL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	640.6179809570312	2	640.355888	1278.69722	0.017433	1.1163E-05	0.88942	0.00056955	0.90686	0.00058071	640.3562971517529	47.46	0.95204	47.46	47.208	48.16	0					55	21	4	0	0	0	0.025746	1	3488	3488		32.812	6.1195	1	1690200	+		10087	18240	8267	8276	10942	10942					0.0690223211997818
EVGGEALGRLL	11	Unmodified	_EVGGEALGRLL_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__P02070;CON__Q3SX09	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	OvCa99_classI_Rep5	1	557.318359375	2	557.316763	1112.61897	2.1996	0.0012259	-0.53261	-0.00029683	1.667	0.00092903	557.3162603815477	106.76	0.5252	106.76	106.54	107.06	0					27	11	3	0	0	0	0.070445	1	12020	12020		134.77	13.897	1	1593100		+	10088	9402	8268	8277	10943	10943					0.06716799534774509
EVGGEALGRLL	11	Unmodified	_EVGGEALGRLL_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__P02070;CON__Q3SX09	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.318359375	2	557.316763	1112.61897	-0.6642	-0.00037017	0.46373	0.00025844	-0.20047	-0.00011173	557.3168545209545	108.74	1.7124	107.02	106.13	107.84	-1.7256					57	33	3	0	0	0	0.046751	1	9978	9978		117.81	27.441	1	131820		+	10089	9402	8268	8277	10944	10944					0.06716799534774509
EVGKGLSSHA	10	Unmodified	_EVGKGLSSHA_					0	0	0		ENST00000482993.6_3_10:135271189-135271429:+|nuORF	ENST00000482993.6_3_10:135271189-135271429:+|nuORF	ENST00000482993.6_3_10:135271189-135271429:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.6969909667969	2	492.759081	983.503609	0.014862	7.3235E-06	-1.5175	-0.00074778	-1.5027	-0.00074046	492.75790390396685	45.18	0.38586	45.18	45.068	45.454	0					10	8	2	0	0	0	0.026994	1	3131	3131		19.104	0	1	416050			10090	12581	8269	8278	10945	10945					0.011196954037586693
EVGKGLSSHA	10	Unmodified	_EVGKGLSSHA_					0	0	0		ENST00000482993.6_3_10:135271189-135271429:+|nuORF	ENST00000482993.6_3_10:135271189-135271429:+|nuORF	ENST00000482993.6_3_10:135271189-135271429:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	492.759081	983.503609	0.50719	0.00024992	-1.1055	-0.00054474	-0.59831	-0.00029482	492.75858764273266	47.956	0.45756	44.848	44.581	45.039	-3.1077	-0.16578	0.0001169	NaN	31.53	22	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36909			10091	12581	8269	8278							0.011196954037586693
EVGLHHALVS	10	Unmodified	_EVGLHHALVS_					0	0	0			REV__nc|ENSG00000132600|Q9NVM4-4|PRMT7	REV__nc|ENSG00000132600|Q9NVM4-4|PRMT7	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.298583984375	2	531.290548	1060.56654	1.6647	0.00088444	-3.7412	-0.0019877	-2.0765	-0.0011032	531.2887441067919	102.09	0.55151	102.09	101.95	102.5	0					27	12	3	0	0	0	0.026871	1	11411	11411		29.15	6.1071	1	806810	+		10092	19090	8270	8279	10946	10946					0.03868261191792044
EVGPTLDALM	10	Unmodified	_EVGPTLDALM_					0	0	0			REV__nc|nan|Q9NRJ1|C8orf17	REV__nc|nan|Q9NRJ1|C8orf17	MULTI-MSMS	OvCa9_classI_Rep2	2	523.2669067382812	2	523.26535	1044.51615	0.97653	0.00051099	2.3134	0.0012105	3.2899	0.0017215	523.2663366880206	42.852	0.89061	40.142	39.917	40.808	-2.7097					36	17	3	0	0	0	0.48198	1	2340	2340		56.721	15.943	1	94345	+		10093	29244	8271	8280	10947	10947					-0.004330292482336517
EVGQQLLLK	9	Unmodified	_EVGQQLLLK_					0	0	0			REV__nc|ENSG00000106013|Q92527-2|ANKRD7	REV__nc|ENSG00000106013|Q92527-2|ANKRD7	MULTI-MSMS	OvCa9_classI_Rep3	3	514.3115844726562	2	514.310949	1026.60735	0.77543	0.00039881	-1.0172	-0.00052318	-0.24181	-0.00012437	514.3103043600519	105.05	2.4418	103.7	103	105.44	-1.3482					111	46	4	0	0	0	0.094616	1	7343	7343		98.629	0	1	848940	+		10094	17774	8272	8281	10948	10948					0.09510602511409161
EVGRLREAV	9	Unmodified	_EVGRLREAV_					0	0	0		ENSG00000198483|ENST00000355594|ANKRD35	ENSG00000198483|ENST00000355594|ANKRD35	ENSG00000198483|ENST00000355594|ANKRD35	MULTI-MSMS	OvCa99_classI_Rep5	1	514.7982177734375	2	514.795998	1027.57744	-0.73251	-0.00037709	0.48256	0.00024842	-0.24994	-0.00012867	514.7962220184838	49.336	1.2139	49.336	49.031	50.245	0					70	27	5	0	0	0	0.3076	1	3670	3670		62.107	1.1355	1	11686000			10095	8820	8273	8282	10949	10949					0.06475663566084222
EVGRSRGPR	9	Unmodified	_EVGRSRGPR_					0	0	0			REV__ENST00000555427.1_1_16:89985295-89985397:+|nuORF	REV__ENST00000555427.1_1_16:89985295-89985397:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.2834777832031	2	507.283589	1012.55262	0.0066851	3.3913E-06	-0.10662	-5.4086E-05	-0.099933	-5.0694E-05	507.283412188162	31.081	1.5294	28.371	28.15	29.679	-2.7097					66	30	3	0	0	0	0.55011	1	934	934		37.812	1.3648	1	500220	+		10096	27542	8274	8283	10950	10950					0.04685028483379483
EVGRTKLEV	9	Unmodified	_EVGRTKLEV_					0	0	0		nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000480260.1_1_3:183899436-183900037:+|nuORF;ENST00000461733.5_1_3:183898306-183901401:+|nuORF	nc|ENSG00000161203|Q96CW1-2|AP2M1	nc|ENSG00000161203|Q96CW1-2|AP2M1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7762451171875	2	515.798206	1029.58186	-0.15645	-8.0697E-05	-0.92181	-0.00047547	-1.0783	-0.00055617	515.799604792507	109.52	1.9734	107.79	106.87	108.84	-1.7256					52	37	3	0	0	0	0.027433	1	10073	10073		54.776	5.3348	1	96838			10097	6123	8275	8284	10951	10951					0.06825127988986424
EVGSHIGFQGH	11	Unmodified	_EVGSHIGFQGH_					0	0	0			REV__ENST00000433031.1_1_7:57217543-57217852:-|nuORF	REV__ENST00000433031.1_1_7:57217543-57217852:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.33056640625	2	584.280712	1166.54687	1.5036	0.00087854	-0.70687	-0.00041301	0.79676	0.00046553	584.2798839388578	112.59	0.63087	112.59	112.2	112.83	0					28	13	3	0	0	0	0.025528	1	12802	12802		35.152	0	1	541810	+		10098	25741	8276	8285	10952	10952					-0.029741148189714295
EVHAKYVAV	9	Unmodified	_EVHAKYVAV_					0	0	0			REV__ENST00000335272.9_1_22:28249263-28249608:-|nuORF	REV__ENST00000335272.9_1_22:28249263-28249608:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.26708984375	2	508.282192	1014.54983	-1.0121	-0.00051442	3.733	0.0018974	2.7209	0.001383	508.28474459888594	69.881	0.49798	69.881	69.591	70.089	0					31	11	4	0	0	0	0.027418	1	6638	6638		40.778	0	1	1201100	+		10099	24577	8277	8286	10953	10953					0.043137603058426066
EVHCFCVVS	9	Unmodified	_EVHCFCVVS_					0	0	0		ENSG00000135722|ENST00000258200|FBXL8	ENSG00000135722|ENST00000258200|FBXL8	ENSG00000135722|ENST00000258200|FBXL8	MULTI-SECPEP	OvCa9_classI_Rep3	3	512.2542114257812	2	511.725338	1021.43612	-1.0317	-0.00052796	-1.3569	-0.00069438	-2.3887	-0.0012223	511.7239676462485	86.504	0.65317	84.327	83.979	84.633	-2.1768					17	12	2	0	0	0	0.027456	1	5158	5158		38.806	0	1	29334			10100	4407	8278	8287	10954	10954					-0.07373794123054722
EVHCGTNVCRK	11	Unmodified	_EVHCGTNVCRK_					0	0	0		ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	MULTI-MSMS	OvCa99_classI_Rep5	1	415.8652038574219	3	415.865747	1244.57541	-0.24736	-0.00010287	-3.2971	-0.0013712	-3.5445	-0.001474	415.86425411176344	27.731	2.1951	27.731	27.341	29.536	0					93	43	3	0	0	0	0.71098	1	853	853		25.892	1.6599	1	140770			10101	4984	8279	8288	10955	10955					-0.03709456505680464
EVHDLLVDIK	10	Unmodified	_EVHDLLVDIK_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA;NBEA|p.N1381Ffs*28|1|0.43|ENSG00000172915|chr13:35164414-35164430|CATAACACAATTCACCT/-|frameshift_variant	ENSG00000172915|ENST00000379939|NBEA	ENSG00000172915|ENST00000379939|NBEA	MULTI-MSMS	OvCa9_classI_Rep4_	4	590.8311767578125	2	590.832246	1179.64994	0.72982	0.0004312	-2.9216	-0.0017262	-2.1918	-0.001295	590.8303573746414	32.589	1.206	29.894	29.544	30.75	-2.6954					63	26	4	0	0	0	0.762	1	794	794		23.523	1.5628	1	114090			10102	7329	8280	8289	10956	10956					0.06729952848968423
EVHGSGHIK	9	Unmodified	_EVHGSGHIK_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.2746276855469	2	482.253966	962.493378	-0.24774	-0.00011948	-1.1557	-0.00055734	-1.4034	-0.00067681	482.25336498469073	33.426	0.39698	33.426	33.186	33.583	0					9	7	2	0	0	0	0.027456	1	1543	1543		38.806	0	1	77714	+		10103	20219	8281	8290	10957	10957					0.010631324691871669
EVHKRRYL	8	Unmodified	_EVHKRRYL_					0	0	0		WDFY3|p.Q3037Rfs*34|1|0.06|ENSG00000163625|chr4:84691725-84691725|T/-|frameshift_variant;WDFY3|p.S3365Qfs*9|1|0.07|ENSG00000163625|chr4:84678973-84678974|-/G|frameshift_variant;nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	WDFY3|p.Q3037Rfs*34|1|0.06|ENSG00000163625|chr4:84691725-84691725|T/-|frameshift_variant	WDFY3|p.Q3037Rfs*34|1|0.06|ENSG00000163625|chr4:84691725-84691725|T/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.2930908203125	2	550.819807	1099.62506	-0.93593	-0.00051553	1.2827	0.00070652	0.34673	0.00019099	550.8203429034031	59.375	0.45818	59.375	59.228	59.686	0					17	11	2	0	0	0	0.028476	1	5124	5124		47.916	18.766	1	397620			10104	36302	8282	8291	10958	10958					0.07923362556925895
EVHYLVDAL	9	Unmodified	_EVHYLVDAL_					0	0	0			REV__ENST00000520079.1_1_8:37996261-37996586:+|nuORF	REV__ENST00000520079.1_1_8:37996261-37996586:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8005981445312	2	529.779482	1057.54441	2.1644	0.0011467	1.583	0.00083865	3.7474	0.0019853	530.2821655586072	137.44	0.24066	137.44	137.26	137.5	0					6	4	2	0	0	0	0.027462	1	16020	16020		31.955	0	1	20855	+		10105	18907	8283	8292	10959	10959					0.017940367233904908
EVIAKAIAL	9	Unmodified	_EVIAKAIAL_					0	0	0			REV__tr|A0A7D6ZI41|A0A7D6ZI41_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02750PE=4SV=1	REV__tr|A0A7D6ZI41|A0A7D6ZI41_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02750PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	465.2904357910156	2	464.29731	926.580068	-0.99516	-0.00046205	1.0479	0.00048652	0.052698	2.4468E-05	464.2977359979956	100.2	0.99191	99.37	99.014	100.01	-0.83051					23	19	2	0	0	0	0.027456	1	9121	9121		38.806	9.6566	1	33765	+		10106	32047	8284	8293	10960	10960					0.1138411897103424
EVIAKAIAL	9	Unmodified	_EVIAKAIAL_					0	0	0			REV__tr|A0A7D6ZI41|A0A7D6ZI41_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02750PE=4SV=1	REV__tr|A0A7D6ZI41|A0A7D6ZI41_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02750PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	464.29731	926.580068	-1.0368	-0.00048136	1.2034	0.00055874	0.16665	7.7375E-05	464.29767588299893	101.03	0.7254	99.42	99.194	99.919	-1.6053	0.018247	0.00030208	NaN	27.882	25	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51917	+		10107	32047	8284	8293							0.1138411897103424
EVICRLAKL	9	Unmodified	_EVICRLAKL_					0	0	0			REV__tr|A0A7D6VRS1|A0A7D6VRS1_9CLOTFeMocofactorbiosynthesisproteinNifBOS=ClostridiumintestinaleOX=36845GN=nifBPE=3SV=1	REV__tr|A0A7D6VRS1|A0A7D6VRS1_9CLOTFeMocofactorbiosynthesisproteinNifBOS=ClostridiumintestinaleOX=36845GN=nifBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.2863159179688	2	522.815344	1043.61614	-0.13162	-6.8812E-05	-4.1398	-0.0021643	-4.2714	-0.0022331	522.8128733383841	94.52	0.7854	93.421	93.165	93.95	-1.0995					26	15	2	0	0	0	0.027456	1	8520	8520		30.504	0	1	42674	+		10108	31440	8285	8294	10961	10961					0.0960725287625337
EVIDCFGGKV	10	Unmodified	_EVIDCFGGKV_					0	0	0			REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9	REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.8052368164062	2	533.765517	1065.51648	-1.1047	-0.00058968	-1.6699	-0.00089134	-2.7747	-0.001481	533.7645183525447	56.245	0.85865	52.95	52.617	53.476	-3.2944					38	16	3	0	0	0	0.026681	1	3584	3584		44.377	5.571	1	93839	+		10109	16315	8286	8295	10962	10962					-0.013656095283522518
EVIDCFGGKV	10	Unmodified	_EVIDCFGGKV_					0	0	0			REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9	REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9	MULTI-MATCH	OvCa99_classI_Rep5	1		2	533.765517	1065.51648	0.23829	0.00012719	-6.3984	-0.0034153	-6.1601	-0.0032881	533.7620955713869	52.778	0.21936	52.778	52.653	52.873	0	-0.18183	-0.0044552	NaN	44.377	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66497	+		10110	16315	8286	8295							-0.013656095283522518
EVIDKVVQI	9	Unmodified	_EVIDKVVQI_					0	0	0			REV__tr|A0A553SGA0|A0A553SGA0_NIACIFructose-6-phosphatealdolaseOS=NialliacirculansOX=1397GN=CEQ21_10475PE=4SV=1	REV__tr|A0A553SGA0|A0A553SGA0_NIACIFructose-6-phosphatealdolaseOS=NialliacirculansOX=1397GN=CEQ21_10475PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.2967529296875	2	521.810782	1041.60701	-0.26358	-0.00013754	-0.35212	-0.00018374	-0.6157	-0.00032128	521.8104808283089	98.791	1.194	97.898	97.707	98.901	-0.89305					41	23	2	0	0	0	0.027446	1	9097	9097		60.118	12.461	1	84443	+		10111	29674	8287	8296	10963	10963					0.08787182791570558
EVIDKVVQI	9	Unmodified	_EVIDKVVQI_					0	0	0			REV__tr|A0A553SGA0|A0A553SGA0_NIACIFructose-6-phosphatealdolaseOS=NialliacirculansOX=1397GN=CEQ21_10475PE=4SV=1	REV__tr|A0A553SGA0|A0A553SGA0_NIACIFructose-6-phosphatealdolaseOS=NialliacirculansOX=1397GN=CEQ21_10475PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	521.810782	1041.60701	-0.44841	-0.00023398	-0.28757	-0.00015006	-0.73597	-0.00038404	521.8105232307095	99.678	1.0435	97.993	97.727	98.77	-1.685	0.071446	-0.00050851	NaN	60.118	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109180	+		10112	29674	8287	8296							0.08787182791570558
EVIDKVVQI	9	Unmodified	_EVIDKVVQI_					0	0	0			REV__tr|A0A553SGA0|A0A553SGA0_NIACIFructose-6-phosphatealdolaseOS=NialliacirculansOX=1397GN=CEQ21_10475PE=4SV=1	REV__tr|A0A553SGA0|A0A553SGA0_NIACIFructose-6-phosphatealdolaseOS=NialliacirculansOX=1397GN=CEQ21_10475PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	521.810782	1041.60701	-1.513	-0.00078948	1.2234	0.00063837	-0.28958	-0.00015111	521.8113536208913	100.2	1.0253	97.874	97.568	98.593	-2.3253	-0.047964	0.0010684	NaN	60.118	35	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109050	+		10113	29674	8287	8296							0.08787182791570558
EVIDQRLI	8	Unmodified	_EVIDQRLI_					0	0	0		ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.81732177734375	2	493.287474	984.560395	-0.99808	-0.00049234	0.30538	0.00015064	-0.6927	-0.0003417	493.2882442919573	62.011	0.66287	59.252	58.672	59.335	-2.7593					15	12	2	0	0	0	0.028476	1	4618	4618		74.255	0	1	16629			10114	6369	8288	8297	10964	10964					0.06749742960300864
EVIDQRLI	8	Unmodified	_EVIDQRLI_					0	0	0		ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	MULTI-MATCH	OvCa99_classI_Rep5	1		2	493.287474	984.560395	-0.72662	-0.00035843	0.25766	0.0001271	-0.46897	-0.00023134	493.2873617026706	59.112	0.36722	59.112	58.973	59.34	0	-0.07115	0.00051716	NaN	74.255	18	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	712510			10115	6369	8288	8297							0.06749742960300864
EVIDQRLI	8	Unmodified	_EVIDQRLI_					0	0	0		ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	493.287474	984.560395	-0.039535	-1.9502E-05	-1.1359	-0.00056033	-1.1754	-0.00057983	493.2870520935643	62.643	0.54387	59.185	58.715	59.259	-3.4577	0.0023705	-0.0008577	NaN	74.255	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69628			10116	6369	8288	8297							0.06749742960300864
EVIHNSII	8	Unmodified	_EVIHNSII_					0	0	0			REV__tr|A0A7D6VTD0|A0A7D6VTD0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08415PE=4SV=1	REV__tr|A0A7D6VTD0|A0A7D6VTD0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08415PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	463.3007507324219	2	462.761092	923.507631	-0.43728	-0.00020235	0.8665	0.00040098	0.42923	0.00019863	462.76124314593926	83.552	1.4373	81.953	81.46	82.897	-1.5988					37	28	2	0	0	0	0.028476	1	7265	7265		47.916	0	1	17500	+		10117	31595	8289	8298	10965	10965					0.042817848974891604
EVIHNSII	8	Unmodified	_EVIHNSII_					0	0	0			REV__tr|A0A7D6VTD0|A0A7D6VTD0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08415PE=4SV=1	REV__tr|A0A7D6VTD0|A0A7D6VTD0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08415PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	462.761092	923.507631	-1.1132	-0.00051514	1.2071	0.00055858	0.093873	4.3441E-05	462.76151399604674	83.818	1.2968	81.557	81.211	82.508	-2.261	-0.19799	0.00011548	NaN	47.916	38	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40119	+		10118	31595	8289	8298							0.042817848974891604
EVIIAKDEV	9	Unmodified	_EVIIAKDEV_					0	0	0		nc|ENSG00000117020|Q9Y243-2|AKT3;ENSG00000117020|ENST00000673466|AKT3;ENST00000537834.5_1_19:40745726-40771198:-|nuORF;nc|ENSG00000105221|P31751-2|AKT2;ENST00000391844.8_1_19:40739781-40791100:-|nuORF;ENSG00000105221|ENST00000392038|AKT2	nc|ENSG00000117020|Q9Y243-2|AKT3	nc|ENSG00000117020|Q9Y243-2|AKT3	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.787841796875	2	508.28714	1014.55973	0.094304	4.7934E-05	3.839	0.0019513	3.9333	0.0019993	508.2891577830237	32.59	0.74081	32.59	32.055	32.796	0					25	14	3	0	0	0	0.027411	1	1433	1433		54.776	13.998	1	195510			10119	3231	8290	8299	10966	10966					0.05302903520566815
EVIKGAIL	8	Unmodified	_EVIKGAIL_					0	0	0			REV__nc|ENSG00000079215|P43003-2|SLC1A3	REV__nc|ENSG00000079215|P43003-2|SLC1A3	MULTI-SECPEP	OvCa9_classI_Rep3	3	421.7587585449219	2	421.770929	841.527304	0.4687	0.00019768	-2.5891	-0.001092	-2.1204	-0.00089434	421.7697769387959	80.788	0.51675	78.466	78.337	78.854	-2.3226					11	9	2	0	0	0	0.028476	1	4479	4479		25.45	0	1	10665	+		10120	17037	8291	8300	10967	10967					0.10020160908231901
EVIKGAIL	8	Unmodified	_EVIKGAIL_					0	0	0			REV__nc|ENSG00000079215|P43003-2|SLC1A3	REV__nc|ENSG00000079215|P43003-2|SLC1A3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	421.770929	841.527304	0.53554	0.00022588	0.0119	5.019E-06	0.54744	0.00023089	421.7707343043132	80.525	0.89907	78.83	78.419	79.318	-1.6951	0.18201	0.0010837	NaN	30.504	17	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7566.1	+		10121	17037	8291	8300							0.10020160908231901
EVIKLMESIT	10	Unmodified	_EVIKLMESIT_					0	0	0		nc|ENSG00000172403|Q9UMS6-4|SYNPO2;ENSG00000172403|ENST00000307142|SYNPO2;nc|ENSG00000172403|Q9UMS6|SYNPO2;nc|ENSG00000172403|Q9UMS6-3|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.818603515625	2	581.823032	1161.63151	1.3938	0.00081094	2.2712	0.0013215	3.665	0.0021324	582.3247419607858	78.785	0.41441	78.785	78.54	78.955	0					15	9	2	0	0	0	0.02676	1	7984	7984		20.837	0	1	478010			10122	7296	8292	8301	10968	10968					0.057160748827755015
EVIKSTIL	8	Unmodified	_EVIKSTIL_					0	0	0		tr|A0A7D6ZSC9|A0A7D6ZSC9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15330PE=4SV=1	tr|A0A7D6ZSC9|A0A7D6ZSC9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15330PE=4SV=1	tr|A0A7D6ZSC9|A0A7D6ZSC9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15330PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.7175598144531	2	451.781493	901.548434	0.0090808	4.1025E-06	1.6499	0.00074541	1.659	0.00074951	451.782093838387	70.252	1.6066	66.771	66.393	67.999	-3.4812					60	32	3	0	0	0	0.028476	1	5330	5330		73.975	8.1716	1	235440			10123	35734	8293	8302	10969	10969					0.09372126217101595
EVIKVERPG	9	Unmodified	_EVIKVERPG_					0	0	0		nc|ENSG00000175600|Q9HAC7-4|SUGCT;nc|ENSG00000175600|Q9HAC7-2|SUGCT;ENSG00000175600|ENST00000335693|SUGCT;nc|ENSG00000175600|Q9HAC7-3|SUGCT	nc|ENSG00000175600|Q9HAC7-4|SUGCT	nc|ENSG00000175600|Q9HAC7-4|SUGCT	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.3360595703125	2	513.800749	1025.58694	1.5238	0.00078294	1.458	0.00074912	2.9818	0.0015321	513.8015195502581	78.889	0.53562	78.889	78.583	79.119	0					20	12	3	0	0	0	0.027441	1	8045	8045		49.442	0	1	489710			10124	7556	8294	8303	10970	10970					0.07517431851601941
EVIMLPLKY	9	Unmodified	_EVIMLPLKY_					0	0	0			REV__tr|A0A553STG5|A0A553STG5_NIACIGlycosidehydrolasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_04920PE=3SV=1	REV__tr|A0A553STG5|A0A553STG5_NIACIGlycosidehydrolasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_04920PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.8545532226562	2	553.319928	1104.6253	0.037407	2.0698E-05	0.44141	0.00024424	0.47882	0.00026494	553.3212709794598	105.62	0.59801	103.6	103.3	103.9	-2.0161					18	11	3	0	0	0	0.027462	1	9576	9576		47.657	5.2612	1	22583	+		10125	30959	8295	8304	10971	10971					0.07717601441913757
EVIMLPLKY	9	Unmodified	_EVIMLPLKY_					0	0	0			REV__tr|A0A553STG5|A0A553STG5_NIACIGlycosidehydrolasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_04920PE=3SV=1	REV__tr|A0A553STG5|A0A553STG5_NIACIGlycosidehydrolasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_04920PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	553.319928	1104.6253	-0.068019	-3.7636E-05	-3.7557	-0.0020781	-3.8237	-0.0021158	553.8185227475619	104.97	0.72769	103.62	103.26	103.99	-1.3482	0.0087653	-0.0023353	NaN	47.657	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20926	+		10126	30959	8295	8304							0.07717601441913757
EVINAVTLI	9	Unmodified	_EVINAVTLI_					0	0	0			REV__tr|A0A553SLC2|A0A553SLC2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20375PE=4SV=1	REV__tr|A0A553SLC2|A0A553SLC2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20375PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.7950439453125	2	486.292225	970.569897	-0.28705	-0.00013959	-2.5399	-0.0012351	-2.8269	-0.0013747	486.29057557018166	46.777	2.2575	43.705	42.666	44.923	-3.0724					123	43	5	0	0	0	0.51865	1	2432	2432		40.778	0	1	2684900	+		10127	30208	8296	8305	10972	10972					0.08343511245811897
EVINVLKKIM	10	Unmodified	_EVINVLKKIM_					0	0	0		ENSG00000196098|ENST00000354924|OR5K4	ENSG00000196098|ENST00000354924|OR5K4	ENSG00000196098|ENST00000354924|OR5K4	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.2870483398438	2	593.865034	1185.71552	-0.080169	-4.7609E-05	4.3227	0.0025671	4.2425	0.0025195	593.8674981376892	43.014	0.72489	43.014	42.796	43.521	0					36	16	3	0	0	0	0.027056	1	2816	2816		27.882	10.517	1	259100			10128	8562	8297	8306	10973	10973					0.1300865077034814
EVIPQHLLKT	10	Unmodified	_EVIPQHLLKT_					0	0	0		ENST00000582081.5_1_17:62541968-62590137:-|nuORF;ENSG00000108854|ENST00000262435|SMURF2	ENST00000582081.5_1_17:62541968-62590137:-|nuORF	ENST00000582081.5_1_17:62541968-62590137:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3499755859375	2	589.350606	1176.68666	0.83977	0.00049492	-1.4765	-0.00087016	-0.6367	-0.00037524	589.3496588808903	87.347	1.5748	85.916	85.593	87.168	-1.4311					104	31	5	0	0	0	0.37436	1	7607	7607		71.877	7.6702	1	1092400			10129	2684	8298	8307	10974	10974					0.10538249465548688
EVIPQHLLKT	10	Unmodified	_EVIPQHLLKT_					0	0	0		ENST00000582081.5_1_17:62541968-62590137:-|nuORF;ENSG00000108854|ENST00000262435|SMURF2	ENST00000582081.5_1_17:62541968-62590137:-|nuORF	ENST00000582081.5_1_17:62541968-62590137:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	589.35205078125	2	589.350606	1176.68666	-1.5955	-0.00094032	0.64854	0.00038221	-0.94698	-0.0005581	589.3508266694524	88.435	1.7909	86.304	85.906	87.697	-2.1309					124	35	5	0	0	0	0.24425	1	5364	5364		87.696	4.946	1	1379700			10130	2684	8298	8307	10975	10975					0.10538249465548688
EVIPQHLLKT	10	Unmodified	_EVIPQHLLKT_					0	0	0		ENST00000582081.5_1_17:62541968-62590137:-|nuORF;ENSG00000108854|ENST00000262435|SMURF2	ENST00000582081.5_1_17:62541968-62590137:-|nuORF	ENST00000582081.5_1_17:62541968-62590137:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3507080078125	2	589.350606	1176.68666	-1.1546	-0.00068047	0.46938	0.00027663	-0.68523	-0.00040384	589.3507829555228	88.833	1.6912	86.23	85.832	87.523	-2.6027					106	33	5	0	0	0	0.22663	1	7602	7602		90.37	6.7228	1	1268100			10131	2684	8298	8307	10976	10976					0.10538249465548688
EVIRALTARGI	11	Unmodified	_EVIRALTARGI_					0	0	0		ENST00000565963.5_1_16:2571022-2578042:+|nuORF;ENST00000561487.1_1_16:2577913-2578724:+|nuORF;ENSG00000162066|ENST00000293971|AMDHD2;nc|ENSG00000162066|Q9Y303-2|AMDHD2;nc|ENSG00000162066|Q9Y303-3|AMDHD2	ENST00000565963.5_1_16:2571022-2578042:+|nuORF	ENST00000565963.5_1_16:2571022-2578042:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	400.2498779296875	3	400.247062	1197.71936	2.3259	0.00093092	-2.5417	-0.0010173	-0.21579	-8.6368E-05	400.2459940700074	56.884	1.8279	53.539	53.171	54.999	-3.3449					107	35	5	0	0	0	0.68391	1	3692	3692		35.178	0	1	994040			10132	6153	8299	8308	10977	10977					0.1284045658840114
EVISGRLLK	9	Unmodified	_EVISGRLLK_					0	0	0		nc|ENSG00000148057|Q5T6J7-3|IDNK;ENSG00000148057|ENST00000376419|IDNK;nc|ENSG00000148057|Q5T6J7-2|IDNK	nc|ENSG00000148057|Q5T6J7-3|IDNK	nc|ENSG00000148057|Q5T6J7-3|IDNK	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.30230712890625	2	507.818941	1013.62333	0.13785	7.0005E-05	-1.7456	-0.00088644	-1.6077	-0.00081644	507.8179795513171	81.138	1.071	79.49	79.315	80.386	-1.6485					32	20	2	0	0	0	0.027447	1	6917	6917		39.253	1.4413	1	101520			10133	5385	8300	8309	10978	10978					0.11706308748318861
EVITRRRG	8	Unmodified	_EVITRRRG_					0	0	0		ENST00000332629.6_1_3:196294085-196295479:-|nuORF	ENST00000332629.6_1_3:196294085-196295479:-|nuORF	ENST00000332629.6_1_3:196294085-196295479:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.81732177734375	2	493.796332	985.578111	-0.72461	-0.00035781	-3.2765	-0.0016179	-4.0012	-0.0019758	493.79453625838863	61.146	1.1503	58.387	57.987	59.137	-2.7593					49	21	3	0	0	0	0.028476	1	4618	4618		45.952	0	1	179140			10134	10460	8301	8310	10979	10979					0.08474503005811584
EVIVGDFGIV	10	Unmodified	_EVIVGDFGIV_					0	0	0		nc|ENSG00000157064|Q9BZQ4-2|NMNAT2;chr1:183293793-183304670|304|24.43|0.67|5.19|-|ENST00000294868|NMNAT2,NMNAT2;ENSG00000157064|ENST00000287713|NMNAT2	nc|ENSG00000157064|Q9BZQ4-2|NMNAT2	nc|ENSG00000157064|Q9BZQ4-2|NMNAT2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.84033203125	2	524.289682	1046.56481	-0.63995	-0.00033552	-3.3997	-0.0017824	-4.0396	-0.0021179	524.2877655566348	102.69	1.1503	100.49	100.2	101.35	-2.1994					40	21	2	0	0	0	0.027513	1	9316	9316		102.77	0	1	171270			10135	250	8302	8311	10980	10980					0.04339207383191024
EVIVGDRILI	10	Unmodified	_EVIVGDRILI_					0	0	0			REV__tr|A0A553SP64|A0A553SP64_NIACIDihydroorotaseOS=NialliacirculansOX=1397GN=pyrCPE=3SV=1	REV__tr|A0A553SP64|A0A553SP64_NIACIDihydroorotaseOS=NialliacirculansOX=1397GN=pyrCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	563.844482421875	2	563.845156	1125.67576	-0.41085	-0.00023166	0.37442	0.00021112	-0.036429	-2.054E-05	563.8451243260417	115.68	0.69202	115.56	115.19	115.89	-0.11777					41	13	4	0	0	0	0.32141	1	11022	11022		78.264	5.3845	1	458140	+		10136	30500	8303	8312	10981	10981					0.11794847091277916
EVIVHALFGG	10	Unmodified	_EVIVHALFGG_					0	0	0		tr|A0A553SRU3|A0A553SRU3_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01840PE=4SV=1	tr|A0A553SRU3|A0A553SRU3_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01840PE=4SV=1	tr|A0A553SRU3|A0A553SRU3_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01840PE=4SV=1	MSMS	OvCa9_classI_Rep3	3	521.29150390625	2	521.290017	1040.56548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.95	1	124.9	124.4	125.4	-1.0519								0	0	0	0.1365	1	9818	9818		27.882	3.6795	1				10137	34298	8304	8313	10982	10982					0.0468204682290434
EVIWDYAPVI	10	Unmodified	_EVIWDYAPVI_					0	0	0		ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	ENSG00000198734|ENST00000367797|F5	MULTI-SECPEP	OvCa9_classI_Rep3	3	602.8751831054688	2	602.816064	1203.61758	2.2652	0.0013655	-1.5715	-0.00094734	0.69368	0.00041816	602.8152610253694	104.46	1.039	103.03	102.6	103.64	-1.4347					33	19	2	0	0	0	0.026665	1	7271	7271		34.173	23.307	1	65427			10138	8861	8305	8314	10983	10983					0.02391165445965271
EVKDKLKRL	9	Unmodified	_EVKDKLKRL_					0	0	0			REV__tr|A0A7D6ZSW6|A0A7D6ZSW6_9CLOTEthanolamineutilizationproteinEutJOS=ClostridiumintestinaleOX=36845GN=eutJPE=4SV=1	REV__tr|A0A7D6ZSW6|A0A7D6ZSW6_9CLOTEthanolamineutilizationproteinEutJOS=ClostridiumintestinaleOX=36845GN=eutJPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.7514038085938	2	564.858598	1127.70264	4.0617	0.0022943	1.5961	0.00090156	5.6578	0.0031959	564.8595026128808	88.48	0.46537	88.48	88.212	88.677	0					13	10	2	0	0	0	0.027447	1	9374	9374		47.657	8.4045	1	179120	+		10139	32195	8306	8315	10984	10984					0.14389955702472434
EVKDRCTL	8	Unmodified	_EVKDRCTL_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65622809-65623088:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	OvCa99_classI_Rep5	1	482.2501220703125	2	482.250034	962.485516	-0.22418	-0.00010811	0.03026	1.4593E-05	-0.19392	-9.3519E-05	482.2498504195837	47.513	0.99747	47.513	47.251	48.248	0					45	22	3	0	0	0	0.70469	1	3439	3439		42.396	1.8235	1	1094400			10140	7317	8307	8316	10985	10985					0.0027723715739966792
EVKEMEKLV	9	Unmodified	_EVKEMEKLV_					0	0	0		ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	ENSG00000102837|ENST00000219022|OLFM4	MULTI-SECPEP	OvCa9_classI_Rep3	3	553.3154296875	2	552.8021	1103.58965	0.005949	3.2886E-06	-4.2121	-0.0023285	-4.2061	-0.0023252	552.7989010638952	106.52	0.50926	105.25	105.11	105.62	-1.267					19	9	3	0	0	0	0.027425	1	7526	7526		42.864	0	1	33232			10141	2257	8308	8317	10986	10986					0.04199519194253298
EVKERKINVL	10	Unmodified	_EVKERKINVL_					0	0	0		ENSG00000187672|ENST00000288221|ERC2	ENSG00000187672|ENST00000288221|ERC2	ENSG00000187672|ENST00000288221|ERC2	MULTI-SECPEP	OvCa9_classI_Rep2	2	409.9046936035156	3	409.918834	1226.73467	0.53616	0.00021978	-1.2251	-0.00050217	-0.68889	-0.00028239	409.9182744904167	69.428	0.25005	66.807	66.665	66.915	-2.6203					6	4	2	0	0	0	0.027187	1	5509	5509		25.126	2.5644	1	6521			10142	8422	8309	8318	10987	10987					0.13037323385606214
EVKERKINVL	10	Unmodified	_EVKERKINVL_					0	0	0		ENSG00000187672|ENST00000288221|ERC2	ENSG00000187672|ENST00000288221|ERC2	ENSG00000187672|ENST00000288221|ERC2	MULTI-MATCH	OvCa99_classI_Rep5	1		3	409.918834	1226.73467	1.8283	0.00074945	-1.2436	-0.00050978	0.58467	0.00023967	409.9179690015353	66.904	0.43604	66.904	66.7	67.136	0	0.048346	-3.883E-06	NaN	31.634	26	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	696160			10143	8422	8309	8318							0.13037323385606214
EVKFGLNMT	9	Unmodified	_EVKFGLNMT_					0	0	0		ENSG00000156162|ENST00000414645|DPY19L4;ENST00000456901.1_1_7:145280818-145281352:+|nuORF	ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.7717895507812	2	519.76806	1037.52157	-0.8354	-0.00043421	4.328	0.0022495	3.4926	0.0018153	519.7700807494525	55.836	1.4676	52.541	52.16	53.628	-3.2944					76	28	3	0	0	0	0.3249	1	3541	3541		60.118	6.7668	1	1897700			10144	5823	8310	8319	10988	10988					0.004306943342726299
EVKFKKVLE	9	Unmodified	_EVKFKKVLE_					0	0	0			REV__nc|ENSG00000156110|P55263-3|ADK	REV__nc|ENSG00000156110|P55263-3|ADK	MULTI-SECPEP	OvCa9_classI_Rep3	3	561.3093872070312	2	560.342249	1118.66995	-0.50285	-0.00028177	2.0852	0.0011684	1.5823	0.00088663	560.3440632978505	80.825	0.67051	78.502	78.131	78.802	-2.3226					17	12	2	0	0	0	0.027462	1	4413	4413		40.778	0	1	14643	+		10145	20461	8311	8320	10989	10989					0.1153574857962667
EVKIEMAY	8	Unmodified	_EVKIEMAY_					0	0	0			REV__nc|ENSG00000099260|Q9NP74-2|PALMD	REV__nc|ENSG00000099260|Q9NP74-2|PALMD	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.7708435058594	2	491.749336	981.484119	-0.15429	-7.587E-05	-0.6184	-0.0003041	-0.77269	-0.00037997	491.7494062713205	65.169	0.15526	65.169	65.034	65.19	0					5	3	2	0	0	0	0.028476	1	5950	5950		30.504	0	1	300040	+		10146	17317	8312	8321	10990	10990					-0.007363969313701091
EVKIQVKKP	9	Unmodified	_EVKIQVKKP_					0	0	0			REV__ENSG00000165091|ENST00000297784|TMC1	REV__ENSG00000165091|ENST00000297784|TMC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.8150634765625	2	534.842416	1067.67028	2.1472	0.0011484	-0.7369	-0.00039413	1.4103	0.0007543	534.8417110255856	82.36	0.33799	82.36	82.141	82.479	0					12	7	2	0	0	0	0.027462	1	8524	8524		25.574	0	1	129090	+		10147	21055	8313	8322	10991	10991					0.1391516829946795
EVKIRIFD	8	Unmodified	_EVKIRIFD_					0	0	0			REV__tr|A0A553SSK5|A0A553SSK5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03160PE=4SV=1	REV__tr|A0A553SSK5|A0A553SSK5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03160PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.84454345703125	2	510.297842	1018.58113	0.19992	0.00010202	3.2532	0.0016601	3.4532	0.0017621	510.2993137355197	124.28	0.34525	124.04	123.78	124.13	-0.23193					12	6	3	0	0	0	0.028476	1	12066	12066		35.618	0	1	13045	+		10148	30844	8314	8323	10992	10992					0.07258333339950696
EVKISKKSKV	10	Unmodified	_EVKISKKSKV_					0	0	0		nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1;ENST00000511971.5_1_4:56749994-56766742:+|nuORF	nc|ENSG00000090989|Q9NV70-2|EXOC1	nc|ENSG00000090989|Q9NV70-2|EXOC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.2542724609375	2	573.366256	1144.71796	-0.74838	-0.0004291	-0.072357	-4.1487E-05	-0.82074	-0.00047058	573.8680239454814	61.645	0.45293	61.645	61.416	61.869	0					14	10	2	0	0	0	0.027241	1	5458	5458		12.812	0.60486	1	170490			10149	1856	8315	8324	10993	10993					0.15138822499648086
EVKISLWM	8	Oxidation (M)	_EVKISLWM(Oxidation (M))_		EVKISLWM(1)		EVKISLWM(53)	0	0	1		tr|A0A7D6VVG6|A0A7D6VVG6_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05100PE=4SV=1	tr|A0A7D6VVG6|A0A7D6VVG6_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05100PE=4SV=1	tr|A0A7D6VVG6|A0A7D6VVG6_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05100PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	511.2747802734375	2	511.272978	1020.5314	-0.09583	-4.8995E-05	3.0537	0.0015613	2.9579	0.0015123	511.2743643078174	45.282	1.15	42.572	42.248	43.399	-2.7097					45	21	3	0	0	0	0.65062	1	2634	2634		53.351	7.3995	1	142630			10150	35220	8316	8325	10994	10994		772			0.021958823396403204
EVKIVALIT	9	Unmodified	_EVKIVALIT_					0	0	0			REV__nc|ENSG00000290649|Q8NH63|OR51H1	REV__nc|ENSG00000290649|Q8NH63|OR51H1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.2961120605469	2	493.318243	984.621933	-0.49359	-0.0002435	-3.6847	-0.0018177	-4.1783	-0.0020612	493.31506526950335	92.148	0.15208	89.606	89.517	89.669	-2.5425					4	2	2	0	0	0	0.027441	1	7986	7986		40.778	0	1	11408	+		10151	29214	8317	8326	10995	10995					0.12900674659545075
EVKKAYAVL	9	Unmodified	_EVKKAYAVL_					0	0	0			REV__nc|ENSG00000005339|Q92793-2|CREBBP	REV__nc|ENSG00000005339|Q92793-2|CREBBP	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.2906799316406	2	510.808042	1019.60153	-0.00092919	-4.7464E-07	-1.3603	-0.00069488	-1.3613	-0.00069535	510.8069936739072	78.73	0.5372	76.99	76.712	77.249	-1.7398					12	10	2	0	0	0	0.027462	1	6600	6600		21.96	0	1	8597.4	+		10152	16398	8318	8327	10996	10996					0.09251503999746546
EVKKENEPP	9	Unmodified	_EVKKENEPP_					0	0	0			REV__nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	REV__nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	MULTI-SECPEP	OvCa9_classI_Rep2	2	535.8217163085938	2	535.279846	1068.54514	-1.5493	-0.00082932	1.6121	0.00086291	0.062736	3.3581E-05	535.280915860437	57.405	1.1913	54.613	53.931	55.122	-2.792					29	23	2	0	0	0	0.027425	1	4151	4151		69.628	0.78148	1	26963	+		10153	21637	8319	8328	10997	10997					0.013608313724262189
EVKLLVER	8	Unmodified	_EVKLLVER_					0	0	0		ENST00000342222.6_1_8:42151073-42188494:+|nuORF;nc|ENSG00000104365|O14920-4|IKBKB;nc|ENSG00000104365|O14920-2|IKBKB;ENSG00000104365|ENST00000520810|IKBKB	ENST00000342222.6_1_8:42151073-42188494:+|nuORF	ENST00000342222.6_1_8:42151073-42188494:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	494.29461669921875	2	493.305667	984.596781	1.7572	0.00086683	-2.2244	-0.0010973	-0.46719	-0.00023047	493.3043991579875	91.196	0.52301	89.961	89.538	90.061	-1.2355					19	9	3	0	0	0	0.028476	1	8044	8044		62.107	14.45	1	141250			10154	2370	8320	8329	10998	10998					0.10386619857001733
EVKMEKLR	8	Unmodified	_EVKMEKLR_					0	0	0			REV__tr|A0A7D6VMA6|A0A7D6VMA6_9CLOTTypeII/IVsecretionsystemproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14590PE=3SV=1	REV__tr|A0A7D6VMA6|A0A7D6VMA6_9CLOTTypeII/IVsecretionsystemproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14590PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.7974853515625	2	516.797152	1031.57975	-0.51266	-0.00026494	-2.5067	-0.0012954	-3.0193	-0.0015604	516.7957504194654	71.361	1.1396	71.361	71.068	72.208	0					64	27	4	0	0	0	0.35821	1	6924	6924		96.19	11.275	1	11376000	+		10155	31128	8321	8330	10999	10999					0.06522375979534445
EVKPYDGIK	9	Unmodified	_EVKPYDGIK_					0	0	0		tr|A0A7D6VT82|A0A7D6VT82_9CLOTHADfamilyhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07030PE=4SV=1	tr|A0A7D6VT82|A0A7D6VT82_9CLOTHADfamilyhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07030PE=4SV=1	tr|A0A7D6VT82|A0A7D6VT82_9CLOTHADfamilyhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07030PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.8119506835938	2	524.787307	1047.56006	-1.3608	-0.00071413	-1.178	-0.00061822	-2.5388	-0.0013323	524.7866275394275	71.256	0.73683	67.8	67.533	68.27	-3.4563					18	14	2	0	0	0	0.027444	1	5476	5476		54.722	23.193	1	28483			10156	35096	8322	8331	11000	11000					0.038183232404207956
EVKQGNLII	9	Unmodified	_EVKQGNLII_					0	0	0			REV__L1PA8_dup7672|chr19:21549449-21550650:-|1.0893067253068611|0.363832208290546|1.58|386.0|36|3|sense	REV__L1PA8_dup7672|chr19:21549449-21550650:-|1.0893067253068611|0.363832208290546|1.58|386.0|36|3|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.7646179199219	2	507.303124	1012.5917	-1.6134	-0.00081848	1.5714	0.00079717	-0.041993	-2.1303E-05	507.3038031600257	118.83	0.77575	117.48	117.21	117.98	-1.3444					19	14	2	0	0	0	0.027455	1	11184	11184		42.396	0	1	26747	+		10157	28578	8323	8332	11001	11001					0.08590315994399589
EVKQGNLII	9	Unmodified	_EVKQGNLII_					0	0	0			REV__L1PA8_dup7672|chr19:21549449-21550650:-|1.0893067253068611|0.363832208290546|1.58|386.0|36|3|sense	REV__L1PA8_dup7672|chr19:21549449-21550650:-|1.0893067253068611|0.363832208290546|1.58|386.0|36|3|sense	MULTI-MATCH	OvCa9_classI_Rep3	3		2	507.303124	1012.5917	-0.6008	-0.00030479	0.14077	7.1414E-05	-0.46003	-0.00023337	507.30284070548106	118.5	0.44716	117.48	117.24	117.68	-1.0271	-0.0033145	-0.00097461	NaN	42.396	16	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20011	+		10158	28578	8323	8332							0.08590315994399589
EVKSLVNRS	9	Unmodified	_EVKSLVNRS_					0	0	0		nc|ENSG00000168280|O60282-2|KIF5C;ENSG00000168280|ENST00000435030|KIF5C;ENST00000460377.1_2:149835462-149853923:+|nuORF	nc|ENSG00000168280|O60282-2|KIF5C	nc|ENSG00000168280|O60282-2|KIF5C	MULTI-MSMS	OvCa9_classI_Rep2	2	516.2957153320312	2	516.29583	1030.57711	0.9175	0.0004737	-1.1848	-0.0006117	-0.26729	-0.000138	516.295098499438	30.292	1.2323	27.582	27.36	28.592	-2.7097					62	24	4	0	0	0	0.59259	1	839	839		32.812	0	1	509350			10159	6886	8324	8333	11002	11002					0.06304243846238933
EVKSQRMK	8	Unmodified	_EVKSQRMK_					0	0	0		tr|A0A7D7AAS9|A0A7D7AAS9_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12615PE=4SV=1	tr|A0A7D7AAS9|A0A7D7AAS9_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12615PE=4SV=1	tr|A0A7D7AAS9|A0A7D7AAS9_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12615PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	503.7566223144531	2	503.279126	1004.5437	-1.6654	-0.00083816	1.4785	0.00074408	-0.18692	-9.4074E-05	503.78190951112157	53.301	1.5861	50.487	49.788	51.375	-2.8139					56	31	3	0	0	0	0.028476	1	3605	3605		60.972	6.1956	1	34847			10160	36208	8325	8334	11003	11003					0.04160918802688229
EVKTREKL	8	Unmodified	_EVKTREKL_					0	0	0		ENSG00000127337|ENST00000247843|YEATS4	ENSG00000127337|ENST00000247843|YEATS4	ENSG00000127337|ENST00000247843|YEATS4	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.2584533691406	2	501.800749	1001.58694	-0.80891	-0.00040591	1.0668	0.00053534	0.25793	0.00012943	501.80122270700684	53.407	0.51984	53.407	53.131	53.651	0					26	9	4	0	0	0	0.028476	1	4244	4244		67.494	5.3863	1	1083000			10161	3827	8326	8335	11004	11004					0.08621431851599937
EVKVAVLFP	9	Unmodified	_EVKVAVLFP_					0	0	0			REV__nc|ENSG00000159842|Q12979-2|ABR	REV__nc|ENSG00000159842|Q12979-2|ABR	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.27685546875	2	501.305136	1000.59572	-0.36327	-0.00018211	-4.3182	-0.0021647	-4.6815	-0.0023469	501.3032742776189	78.543	1.3686	75.736	75.467	76.836	-2.8067					29	28	2	0	0	0	0.027462	1	6448	6448		45.952	0	1	132170	+		10162	28956	8327	8336	11005	11005					0.09544405488088614
EVKVVMAKLL	10	Unmodified	_EVKVVMAKLL_					0	0	0		nc|ENSG00000036530|Q9Y6A2-3|CYP46A1;nc|ENSG00000036530|Q9Y6A2-2|CYP46A1;ENSG00000036530|ENST00000261835|CYP46A1	nc|ENSG00000036530|Q9Y6A2-3|CYP46A1	nc|ENSG00000036530|Q9Y6A2-3|CYP46A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.3097534179688	2	565.354302	1128.69405	2.4181	0.0013671	-3.9571	-0.0022372	-1.5391	-0.00087011	565.3519934595752	96.689	0.16911	96.689	96.625	96.795	0					5	3	2	0	0	0	0.026931	1	10594	10594		45.972	10.354	1	90899			10163	1088	8328	8337	11006	11006					0.13485265741633157
EVKVVMAKLL	10	Unmodified	_EVKVVMAKLL_					0	0	0		nc|ENSG00000036530|Q9Y6A2-3|CYP46A1;nc|ENSG00000036530|Q9Y6A2-2|CYP46A1;ENSG00000036530|ENST00000261835|CYP46A1	nc|ENSG00000036530|Q9Y6A2-3|CYP46A1	nc|ENSG00000036530|Q9Y6A2-3|CYP46A1	MULTI-SECPEP	OvCa9_classI_Rep3	3	565.3089599609375	2	565.354302	1128.69405	-0.74295	-0.00042003	-3.0646	-0.0017326	-3.8076	-0.0021526	565.8536803067675	97.554	0.24005	95.794	95.722	95.962	-1.7595					6	4	2	0	0	0	0.026606	1	6473	6473		62.107	9.1707	1	13147			10164	1088	8328	8337	11007	11007					0.13485265741633157
EVLACEDLEL	10	Unmodified	_EVLACEDLEL_					0	0	0		ENSG00000089876|ENST00000284690|DHX32;nc|ENSG00000089876|Q7L7V1-2|DHX32;DHX32|p.D323Mfs*16|1|0.21|ENSG00000089876|chr10:125854086-125854086|C/-|frameshift_variant	ENSG00000089876|ENST00000284690|DHX32	ENSG00000089876|ENST00000284690|DHX32	MULTI-SECPEP	OvCa9_classI_Rep4_	4	566.3614501953125	2	567.273372	1132.53219	-0.48361	-0.00027434	-1.7651	-0.0010013	-2.2487	-0.0012756	567.2725026677804	100.56	0.82528	98.294	97.875	98.7	-2.2665					42	15	4	0	0	0	0.026665	1	8980	8980		34.173	0	1	53165			10165	1829	8329	8338	11008	11008					-0.028773678019888393
EVLAQKEKN	9	Unmodified	_EVLAQKEKN_					0	0	0			REV__ENST00000575880.1_1_17:4126224-4126446:+|nuORF	REV__ENST00000575880.1_1_17:4126224-4126446:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	530.2825927734375	2	529.795663	1057.57677	-0.53271	-0.00028223	-0.99704	-0.00052823	-1.5297	-0.00081045	529.7948890514149	89.221	1.304	87.091	86.702	88.006	-2.1309					39	25	3	0	0	0	0.027462	1	5563	5563		26.693	3.6504	1	142160	+		10166	27778	8330	8339	11009	11009					0.05028824126384279
EVLARAPLWSH	11	Unmodified	_EVLARAPLWSH_					0	0	0			REV__nc|ENSG00000139637|Q9HB07|MYG1	REV__nc|ENSG00000139637|Q9HB07|MYG1	MULTI-SECPEP	OvCa99_classI_Rep5	1	427.7593688964844	3	426.903295	1277.68806	-0.74489	-0.00031799	3.7894	0.0016177	3.0446	0.0012997	426.9047148049044	63.816	0.36324	63.816	63.648	64.011	0					14	8	2	0	0	0	0.025457	1	5759	5759		38.714	20.183	1	222180	+		10167	19625	8331	8340	11010	11010					0.06031883554328488
EVLDHESVI	9	Unmodified	_EVLDHESVI_					0	0	0		ENSG00000144747|ENST00000398559|TMF1;nc|ENSG00000144747|P82094-2|TMF1	ENSG00000144747|ENST00000398559|TMF1	ENSG00000144747|ENST00000398559|TMF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.3082885742188	2	520.766571	1039.51859	1.8951	0.00098691	0.07202	3.7506E-05	1.9671	0.0010244	520.7666436609632	84.395	0.62145	84.395	84.051	84.672	0					19	14	2	0	0	0	0.027462	1	8779	8779		21.96	0	1	302600			10168	5180	8332	8341	11011	11011					0.0004114248110909102
EVLDVRENP	9	Unmodified	_EVLDVRENP_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-SECPEP	OvCa9_classI_Rep2	2	535.821533203125	2	535.77747	1069.54039	-1.4349	-0.00076877	-3.266	-0.0017498	-4.7008	-0.0025186	535.7755731666302	57.959	0.74954	55.167	54.674	55.424	-2.7921					21	14	2	0	0	0	0.027452	1	4133	4133		41.427	7.2541	1	19665			10169	7708	8333	8342	11012	11012					0.00839947229678728
EVLEDRPA	8	Unmodified	_EVLEDRPA_					0	0	0			REV__nc|ENSG00000143390|P48382-2|RFX5	REV__nc|ENSG00000143390|P48382-2|RFX5	MULTI-MSMS	OvCa99_classI_Rep5	1	464.74053955078125	2	464.740357	927.46616	-0.41282	-0.00019186	0.5406	0.00025124	0.12777	5.9382E-05	464.74051895425464	41.442	0.65916	41.442	41.149	41.809	0					36	14	4	0	0	0	0.50674	1	2581	2581		76.847	2.5916	1	1210200	+		10170	19838	8334	8343	11013	11013					-0.0004739586186133238
EVLFYKEDF	9	Unmodified	_EVLFYKEDF_					0	0	0			REV__nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	REV__nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.8380126953125	2	595.292422	1188.57029	2.5885	0.0015409	-2.5568	-0.001522	0.031761	1.8907E-05	595.7911085613675	95.023	1.1079	95.023	94.22	95.328	0					28	25	2	0	0	0	0.027462	1	10345	10345		39.253	0.44669	1	408840	+		10171	20915	8335	8344	11014	11014					-0.016451138250204167
EVLGADLGGP	10	Unmodified	_EVLGADLGGP_					0	0	0			REV__nc|ENSG00000151322|Q8IXF0-4|NPAS3	REV__nc|ENSG00000151322|Q8IXF0-4|NPAS3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.2679748535156	2	464.242732	926.470912	1.0445	0.00048492	-0.25515	-0.00011845	0.78938	0.00036647	464.2427257840974	86.03	0.89581	83.384	82.896	83.792	-2.6463					27	17	2	0	0	0	0.026849	1	7215	7215		40.778	6.6056	1	30463	+		10172	15909	8336	8345	11015	11015					0.004734882809088958
EVLGADLGGP	10	Unmodified	_EVLGADLGGP_					0	0	0			REV__nc|ENSG00000151322|Q8IXF0-4|NPAS3	REV__nc|ENSG00000151322|Q8IXF0-4|NPAS3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	464.242732	926.470912	-1.1847	-0.00054997	1.329	0.00061696	0.14429	6.6986E-05	464.2434223555211	85.303	0.8418	83.083	82.744	83.586	-2.2204	-0.15034	0.00038612	NaN	39.253	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59342	+		10173	15909	8336	8345							0.004734882809088958
EVLHNLEFA	9	Unmodified	_EVLHNLEFA_					0	0	0		ENSG00000110888|ENST00000695402|CAPRIN2;nc|ENSG00000110888|Q6IMN6-2|CAPRIN2;nc|ENSG00000110888|Q6IMN6-9|CAPRIN2;nc|ENSG00000110888|Q6IMN6|CAPRIN2;ENST00000546129.1_1_12:30887900-30904061:-|nuORF;nc|ENSG00000110888|Q6IMN6-5|CAPRIN2;nc|ENSG00000110888|Q6IMN6-6|CAPRIN2;nc|ENSG00000110888|Q6IMN6-10|CAPRIN2;nc|ENSG00000110888|Q6IMN6-7|CAPRIN2;nc|ENSG00000110888|Q6IMN6-3|CAPRIN2	ENSG00000110888|ENST00000695402|CAPRIN2	ENSG00000110888|ENST00000695402|CAPRIN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.2706298828125	2	536.277106	1070.53966	2.9232	0.0015677	-0.284	-0.0001523	2.6392	0.0014154	536.2768093151649	89.577	0.53851	89.577	89.352	89.891	0					22	12	2	0	0	0	0.027433	1	9568	9568		19.997	0	1	2535400			10174	2801	8337	8346	11016	11016					0.007211525806269492
EVLHRGELIL	10	Unmodified	_EVLHRGELIL_					0	0	0			REV__ENST00000374935.7_1_1:21212860-21220053:-|nuORF	REV__ENST00000374935.7_1_1:21212860-21220053:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.2765502929688	2	589.84823	1177.68191	2.1302	0.0012565	4.3218	0.0025492	6.4519	0.0038057	589.8508705864862	116.45	0.27356	116.45	116.28	116.55	0					8	5	2	0	0	0	0.026956	1	13318	13318		19.997	0	1	87872	+		10175	25074	8338	8347	11017	11017					0.10017365322801197
EVLIEQTLLM	10	Unmodified	_EVLIEQTLLM_					0	0	0			REV__ENST00000432673.1_1_6:139013691-139017806:+|nuORF	REV__ENST00000432673.1_1_6:139013691-139017806:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	594.8291625976562	2	594.830857	1187.64716	-1.0911	-0.00064901	-3.7863	-0.0022522	-4.8774	-0.0029012	594.8287093087835	76.656	1.4596	74.802	74.518	75.977	-1.854					101	27	5	0	0	0	0.55109	1	6343	6343		47.96	1.9873	1	1003200	+		10176	25735	8339	8348	11018	11018					0.06084361399825866
EVLKHLQGK	9	Unmodified	_EVLKHLQGK_					0	0	0		nc|ENSG00000115266|O95996-2|APC2;nc|ENSG00000115266|O95996-3|APC2;ENSG00000115266|ENST00000590469|APC2;ENST00000593146.1_3_19:1452985-1457289:+|nuORF	nc|ENSG00000115266|O95996-2|APC2	nc|ENSG00000115266|O95996-2|APC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.8639526367188	2	526.316566	1050.61858	0.71379	0.00037568	1.6726	0.0008803	2.3864	0.001256	526.3170589348547	103.24	1.0475	103.24	102.98	104.02	0					57	24	5	0	0	0	0.027462	1	11626	11626		27.882	0	1	1432900			10177	3076	8340	8349	11019	11019					0.09529424605557324
EVLKLPFLI	9	Unmodified	_EVLKLPFLI_					0	0	0			REV__ENST00000574776.5_1_17:3543500-3558534:+|nuORF	REV__ENST00000574776.5_1_17:3543500-3558534:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.8197021484375	2	536.344261	1070.67397	2.4849	0.0013328	-1.3684	-0.00073395	1.1165	0.00059884	536.3431867554373	75.926	0.357	75.926	75.801	76.158	0					14	8	2	0	0	0	0.027433	1	7567	7567		51.335	0	1	302330	+		10178	16629	8341	8350	11020	11020					0.14145838073318373
EVLLQLTPALA	11	Unmodified	_EVLLQLTPALA_					0	0	0			REV__ENST00000536241.1_1_12:6959960-6960418:-|nuORF	REV__ENST00000536241.1_1_12:6959960-6960418:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.33056640625	2	584.352814	1166.69108	1.5114	0.00088319	-3.8433	-0.0022459	-2.3319	-0.0013627	584.3513451452518	112.59	0.49261	112.59	112.34	112.83	0					21	10	4	0	0	0	0.025528	1	12802	12802		42.864	3.6114	1	563060	+		10179	25905	8342	8351	11021	11021					0.1143971388846694
EVLLSIEDKG	10	Unmodified	_EVLLSIEDKG_					0	0	0			REV__ENSG00000142698|ENST00000488417|C1orf94	REV__ENSG00000142698|ENST00000488417|C1orf94	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.2784423828125	2	551.803154	1101.59175	0.91409	0.0005044	1.4781	0.00081562	2.3922	0.00132	551.8037639021534	139.23	0.63043	139.23	138.98	139.61	0					20	12	2	0	0	0	0.026968	1	16285	16285		22.58	0	1	124880	+		10180	19804	8343	8352	11022	11022					0.04502271203705277
EVLLVVKVSSV	11	Unmodified	_EVLLVVKVSSV_					0	0	0		ENST00000556582.5_1_14:75348625-75357926:+|nuORF;ENST00000555071.5_1_14:75348653-75357926:+|nuORF	ENST00000556582.5_1_14:75348625-75357926:+|nuORF	ENST00000556582.5_1_14:75348625-75357926:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	585.7079467773438	2	586.368464	1170.72238	-1.3777	-0.00080784	4.222	0.0024756	2.8443	0.0016678	586.3706769030612	54.036	1.3808	50.789	50.212	51.593	-3.2474					55	26	3	0	0	0	0.025861	1	3415	3415		30.318	13.845	1	128800			10181	13640	8344	8353	11023	11023					0.1438428692256366
EVLLYLLL	8	Unmodified	_EVLLYLLL_					0	0	0		ENST00000482558.5_1_7:17908017-17937021:-|nuORF;ENSG00000071189|ENST00000428135|SNX13;nc|ENSG00000071189|Q9Y5W8|SNX13	ENST00000482558.5_1_7:17908017-17937021:-|nuORF	ENST00000482558.5_1_7:17908017-17937021:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.74517822265625	2	488.309887	974.60522	2.1191	0.0010348	-3.4225	-0.0016713	-1.3035	-0.0006365	488.30805317633366	76.311	0.91626	76.311	75.801	76.718	0					37	22	3	0	0	0	0.028476	1	7682	7682		20.482	0	1	561800			10182	1447	8345	8354	11024	11024					0.11690173773615697
EVLQLKIAD	9	Unmodified	_EVLQLKIAD_					0	0	0			REV__nc|ENSG00000138698|P52306-6|RAP1GDS1	REV__nc|ENSG00000138698|P52306-6|RAP1GDS1	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.3008422851562	2	514.802957	1027.59136	0.21592	0.00011116	-0.68238	-0.00035129	-0.46646	-0.00024014	514.8024536747118	97.101	1.0336	96.142	95.825	96.859	-0.95857					31	20	2	0	0	0	0.027462	1	8849	8849		19.997	0.89325	1	84639	+		10183	19562	8346	8355	11025	11025					0.0786689627452688
EVLRLTKLV	9	Unmodified	_EVLRLTKLV_					0	0	0		PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant;PRPF8|p.Q2065Hfs*8|1|0.04|ENSG00000174231|chr17:1653809-1653810|-/G|frameshift_variant;ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.Q1835Afs*4|1|0.07|ENSG00000174231|chr17:1658255-1658256|-/C|frameshift_variant;PRPF8|p.F1684Dfs*30|1|0.07|ENSG00000174231|chr17:1659445-1659446|-/AAGTCAGGAGATCGAGACCATC|frameshift_variant;ENST00000573716.1_1_17:1581802-1582496:-|nuORF	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.2920532226562	2	535.850242	1069.68593	-0.25604	-0.0001372	-0.19508	-0.00010454	-0.45113	-0.00024174	535.8497003936488	71.342	0.42193	68.835	68.594	69.016	-2.5071					10	7	2	0	0	0	0.027459	1	5742	5742		62.107	5.3864	1	8039.1			10184	7449	8347	8356	11026	11026					0.15387454816482204
EVLRLTKLV	9	Unmodified	_EVLRLTKLV_					0	0	0		PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant;PRPF8|p.Q2065Hfs*8|1|0.04|ENSG00000174231|chr17:1653809-1653810|-/G|frameshift_variant;ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.Q1835Afs*4|1|0.07|ENSG00000174231|chr17:1658255-1658256|-/C|frameshift_variant;PRPF8|p.F1684Dfs*30|1|0.07|ENSG00000174231|chr17:1659445-1659446|-/AAGTCAGGAGATCGAGACCATC|frameshift_variant;ENST00000573716.1_1_17:1581802-1582496:-|nuORF	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	535.850242	1069.68593	1.3013	0.00069728	-1.0427	-0.00055874	0.25855	0.00013854	535.8496897201866	71.64	0.49747	69.037	68.732	69.23	-2.6023	0.10141	-0.0002242	NaN	62.107	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8405.8			10185	7449	8347	8356							0.15387454816482204
EVLRRHRTYRW	11	Unmodified	_EVLRRHRTYRW_					0	0	0		ENSG00000139180|ENST00000266544|NDUFA9	ENSG00000139180|ENST00000266544|NDUFA9	ENSG00000139180|ENST00000266544|NDUFA9	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.3097534179688	3	524.627047	1570.85931	2.2588	0.001185	1.6779	0.00088028	3.9367	0.0020653	524.6277619985108	116.15	0.54915	116.15	115.91	116.46	0					25	11	3	0	0	0	0.02653	1	13315	13315		1.4188	0	1	221520			10186	4753	8348	8357	11027	11027					0.09671633645507427
EVLRSQTTSL	10	Unmodified	_EVLRSQTTSL_					0	0	0		ENST00000342992.10_3_2:179482685-179482724:-|nuORF	ENST00000342992.10_3_2:179482685-179482724:-|nuORF	ENST00000342992.10_3_2:179482685-179482724:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	566.3614501953125	2	567.311677	1132.6088	-0.43606	-0.00024738	3.8728	0.0021971	3.4367	0.0019497	567.3137019357971	100.51	0.72704	98.246	97.875	98.602	-2.2665					22	13	2	0	0	0	0.026606	1	8980	8980		52.937	0	1	188440			10187	10590	8349	8358	11028	11028					0.04780191809527423
EVLRTEVAV	9	Unmodified	_EVLRTEVAV_					0	0	0		ENST00000531534.5_1_11:795129-795556:-|nuORF	ENST00000531534.5_1_11:795129-795556:-|nuORF	ENST00000531534.5_1_11:795129-795556:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.26708984375	2	508.292756	1014.57096	-0.093839	-4.7698E-05	1.4255	0.00072455	1.3316	0.00067685	508.29339980437146	69.371	0.86286	69.371	68.977	69.84	0					31	20	3	0	0	0	0.027453	1	6638	6638		30.318	0	1	1143800			10188	13308	8350	8359	11029	11029					0.06425725614712974
EVLSAVALRL	10	Unmodified	_EVLSAVALRL_					0	0	0		ENST00000592982.2_1_19:33793839-33794019:+|nuORF	ENST00000592982.2_1_19:33793839-33794019:+|nuORF	ENST00000592982.2_1_19:33793839-33794019:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	535.8333129882812	2	535.832049	1069.64954	1.5895	0.00085172	0.681	0.0003649	2.2705	0.0012166	535.8324142120423	130.15	0.85739	130.15	129.82	130.68	0					40	17	3	0	0	0	0.48198	1	15121	15121		56.721	7.2795	1	227630			10189	14147	8351	8360	11030	11030					0.11750577919769967
EVLSEGKWII	10	Unmodified	_EVLSEGKWII_					0	0	0		tr|A0A553SIA5|A0A553SIA5_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=dcuSPE=4SV=1	tr|A0A553SIA5|A0A553SIA5_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=dcuSPE=4SV=1	tr|A0A553SIA5|A0A553SIA5_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=dcuSPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	587.3272094726562	2	587.329339	1172.64412	1.4884	0.0008742	-2.6785	-0.0015732	-1.1901	-0.00069899	587.3274581593214	92.254	0.41959	92.254	92.008	92.428	0					18	9	3	0	0	0	0.37436	1	9968	9968		71.877	0.58177	1	721110			10190	33359	8352	8361	11031	11031					0.06470854337317178
EVLSHSLLLL	10	Unmodified	_EVLSHSLLLL_					0	0	0		ENSG00000113302|ENST00000231228|IL12B	ENSG00000113302|ENST00000231228|IL12B	ENSG00000113302|ENST00000231228|IL12B	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3447875976562	2	562.339707	1122.66486	2.5554	0.001437	3.9669	0.0022307	6.5223	0.0036677	562.341833951132	139.43	3.4203	137.93	136.47	139.89	-1.4952					166	69	3	0	0	0	0.65434	1	13531	13531		35.618	0	1	141360			10191	2963	8353	8362	11032	11032					0.10843444717011153
EVLSHSLLLL	10	Unmodified	_EVLSHSLLLL_					0	0	0		ENSG00000113302|ENST00000231228|IL12B	ENSG00000113302|ENST00000231228|IL12B	ENSG00000113302|ENST00000231228|IL12B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	562.339707	1122.66486	-0.46254	-0.0002601	6.8474	0.0038506	6.3849	0.0035905	562.3434433902198	138.39	2.9271	138.17	137.31	140.24	-0.22697	0.13234	0.0014608	NaN	35.618	107	59	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39053			10192	2963	8353	8362							0.10843444717011153
EVLSHSLLLL	10	Unmodified	_EVLSHSLLLL_					0	0	0		ENSG00000113302|ENST00000231228|IL12B	ENSG00000113302|ENST00000231228|IL12B	ENSG00000113302|ENST00000231228|IL12B	MULTI-MATCH	OvCa9_classI_Rep3	3		2	562.339707	1122.66486	-2.0968	-0.0011791	8.5497	0.0048078	6.4528	0.0036287	562.3444201837979	139.06	2.8474	138	137.1	139.95	-1.0595	-0.028882	0.0033752	NaN	35.618	94	57	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36687			10193	2963	8353	8362							0.10843444717011153
EVLSNINQLQ	10	Unmodified	_EVLSNINQLQ_					0	0	0		ENSG00000109452|ENST00000262992|INPP4B	ENSG00000109452|ENST00000262992|INPP4B	ENSG00000109452|ENST00000262992|INPP4B	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.3129272460938	2	579.311677	1156.6088	-1.698	-0.00098369	1.3073	0.00075733	-0.39074	-0.00022636	579.3123798976957	100.15	1.4185	97.825	97.315	98.734	-2.3253					83	27	4	0	0	0	0.45822	1	8979	8979		60.118	4.6141	1	1089800			10194	2712	8354	8363	11033	11033					0.036761918094953216
EVLSYLQAF	9	Unmodified	_EVLSYLQAF_					0	0	0		ENSG00000115593|ENST00000419482|SMYD1	ENSG00000115593|ENST00000419482|SMYD1	ENSG00000115593|ENST00000419482|SMYD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.8213500976562	2	535.281857	1068.54916	-0.97549	-0.00052216	-2.4423	-0.0013073	-3.4178	-0.0018295	535.2802758480593	57.982	1.0102	54.638	54.138	55.148	-3.3449					34	19	3	0	0	0	0.027047	1	3842	3842		87.754	2.8388	1	91139			10195	3109	8355	8364	11034	11034					0.01762920866121931
EVLVERNPD	9	Unmodified	_EVLVERNPD_					0	0	0		nc|ENSG00000229809|P0C7X2-5|ZNF688;ENSG00000229809|ENST00000223459|ZNF688	nc|ENSG00000229809|P0C7X2-5|ZNF688	nc|ENSG00000229809|P0C7X2-5|ZNF688	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.8213500976562	2	535.77747	1069.54039	-1.0791	-0.00057815	-3.1751	-0.0017012	-4.2542	-0.0022793	535.775490135524	58.468	0.5484	55.076	54.852	55.4	-3.392					18	10	2	0	0	0	0.027353	1	3842	3842		71.877	0	1	83217			10196	9283	8356	8365	11035	11035					0.008399472296559907
EVLWDILI	8	Unmodified	_EVLWDILI_					0	0	0			REV__CCNF|p.P753Kfs*22|1|0.2|ENSG00000162063|chr16:2456913-2456914|CC/-|frameshift_variant	REV__CCNF|p.P753Kfs*22|1|0.2|ENSG00000162063|chr16:2456913-2456914|CC/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.2989196777344	2	500.789318	999.564084	2.3457	0.0011747	-4.2364	-0.0021215	-1.8907	-0.00094685	500.78687585357005	84.397	0.91194	84.397	84.051	84.963	0					36	21	3	0	0	0	0.028476	1	8888	8888		60.294	26.778	1	1154900	+		10197	15755	8357	8366	11036	11036					0.06428412734146605
EVLWLLVD	8	Unmodified	_EVLWLLVD_					0	0	0			REV__LRRIQ1|p.E1195Kfs*10|1|0.44|ENSG00000133640|chr12:85124094-85124094|A/-|frameshift_variant	REV__LRRIQ1|p.E1195Kfs*10|1|0.44|ENSG00000133640|chr12:85124094-85124094|A/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.768310546875	2	493.781493	985.548434	1.4889	0.00073518	-3.9084	-0.0019299	-2.4196	-0.0011947	493.7795030121099	113.71	0.66982	113.71	113.57	114.24	0					29	14	3	0	0	0	0.028476	1	12977	12977		40.573	2.7611	1	206690	+		10198	19151	8358	8367	11037	11037					0.05508126217091558
EVMAQHAFL	9	Unmodified	_EVMAQHAFL_					0	0	0			REV__ENSG00000253831|ENST00000454449|ETV3L	REV__ENSG00000253831|ENST00000454449|ETV3L	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.2893676757812	2	523.260402	1044.50625	0.7524	0.0003937	2.282	0.0011941	3.0344	0.0015878	523.2614918982392	143.25	0.29631	143.25	143.07	143.37	0					8	5	2	0	0	0	0.027462	1	16732	16732		35.618	0	1	20467	+		10199	23508	8359	8368	11038	11038					-0.014221724629351229
EVMLMKSSI	9	Unmodified	_EVMLMKSSI_					0	0	0			REV__ENST00000340080.8_1_7:7606567-7607293:+|nuORF	REV__ENST00000340080.8_1_7:7606567-7607293:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.2882080078125	2	519.272121	1036.52969	-0.91338	-0.00047429	1.0865	0.00056418	0.1731	8.9888E-05	519.2724523506182	53.097	0.44373	50.283	49.985	50.429	-2.8139					14	8	2	0	0	0	0.027453	1	3588	3588		37.812	0	1	15820	+		10200	24622	8360	8369	11039	11039					0.012885052593674118
EVNAEVTPV	9	Unmodified	_EVNAEVTPV_					0	0	0			REV__ENSG00000118946|ENST00000377918|PCDH17	REV__ENSG00000118946|ENST00000377918|PCDH17	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.78863525390625	2	479.248015	956.481476	0.19673	9.4284E-05	-1.5264	-0.00073152	-1.3296	-0.00063723	479.24934786286735	78.469	0.66315	75.652	75.263	75.926	-2.8165					22	13	3	0	0	0	0.027447	1	6344	6344		47.657	3.2801	1	25821	+		10201	18421	8361	8370	11040	11040					0.001494709353437429
EVNAVMNLVL	10	Unmodified	_EVNAVMNLVL_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.K3074Sfs*10|1|0.27|ENSG00000187775|chr17:78461662-78461662|T/-|frameshift_variant;DNAH17|p.A3303Gfs*10|1|0.11|ENSG00000187775|chr17:78458634-78458635|-/ACACATCCACATCTGGCAC|frameshift_variant;ENST00000586052.5_1_17:76450753-76471822:-|nuORF	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.808349609375	2	551.302267	1100.58998	2.2435	0.0012368	-0.21428	-0.00011813	2.0292	0.0011187	551.8034600123806	94.958	0.81221	94.958	94.306	95.119	0					34	18	3	0	0	0	0.026867	1	10370	10370		51.193	18.38	1	652890			10202	8432	8362	8371	11041	11041					0.04370938914121325
EVNCILNFNV	10	Unmodified	_EVNCILNFNV_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-MSMS	OvCa9_classI_Rep4_	4	582.78515625	2	582.789524	1163.56449	-2.9728	-0.0017325	-3.9548	-0.0023048	-6.9276	-0.0040373	582.7870495217087	126.37	1.1831	124.96	124.68	125.86	-1.4143					57	23	3	0	0	0	0.6349	1	12083	12083		37.812	3.639	1	169410	+		10203	20520	8363	8372	11042	11042					-0.010745356083134538
EVNDRFYK	8	Unmodified	_EVNDRFYK_					0	0	0		tr|A0A7D7A1M5|A0A7D7A1M5_9CLOTGalactose-1-phosphateuridylyltransferaseOS=ClostridiumintestinaleOX=36845GN=galTPE=3SV=1	tr|A0A7D7A1M5|A0A7D7A1M5_9CLOTGalactose-1-phosphateuridylyltransferaseOS=ClostridiumintestinaleOX=36845GN=galTPE=3SV=1	tr|A0A7D7A1M5|A0A7D7A1M5_9CLOTGalactose-1-phosphateuridylyltransferaseOS=ClostridiumintestinaleOX=36845GN=galTPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.8213500976562	2	535.766906	1069.51926	-1.0231	-0.00054816	3.1257	0.0016747	2.1026	0.0011265	535.7684215953713	58.269	0.34988	54.924	54.748	55.098	-3.3449					12	6	2	0	0	0	0.028476	1	3842	3842		74.255	17.534	1	89405			10204	36043	8364	8373	11043	11043					-0.012720180792030078
EVNDRFYK	8	Unmodified	_EVNDRFYK_					0	0	0		tr|A0A7D7A1M5|A0A7D7A1M5_9CLOTGalactose-1-phosphateuridylyltransferaseOS=ClostridiumintestinaleOX=36845GN=galTPE=3SV=1	tr|A0A7D7A1M5|A0A7D7A1M5_9CLOTGalactose-1-phosphateuridylyltransferaseOS=ClostridiumintestinaleOX=36845GN=galTPE=3SV=1	tr|A0A7D7A1M5|A0A7D7A1M5_9CLOTGalactose-1-phosphateuridylyltransferaseOS=ClostridiumintestinaleOX=36845GN=galTPE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	535.766906	1069.51926	-0.45309	-0.00024275	3.6594	0.0019606	3.2063	0.0017178	535.7687462046696	54.957	0.38826	54.957	54.805	55.193	0	0.036107	0.0030173	NaN	74.255	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	622610			10205	36043	8364	8373							-0.012720180792030078
EVNDRFYK	8	Unmodified	_EVNDRFYK_					0	0	0		tr|A0A7D7A1M5|A0A7D7A1M5_9CLOTGalactose-1-phosphateuridylyltransferaseOS=ClostridiumintestinaleOX=36845GN=galTPE=3SV=1	tr|A0A7D7A1M5|A0A7D7A1M5_9CLOTGalactose-1-phosphateuridylyltransferaseOS=ClostridiumintestinaleOX=36845GN=galTPE=3SV=1	tr|A0A7D7A1M5|A0A7D7A1M5_9CLOTGalactose-1-phosphateuridylyltransferaseOS=ClostridiumintestinaleOX=36845GN=galTPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	535.766906	1069.51926	3.1572	0.0016915	-0.46843	-0.00025097	2.6888	0.0014406	535.7665880376699	58.008	0.61816	54.881	54.567	55.185	-3.1264	-0.039369	-0.0014058	NaN	74.255	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14291			10206	36043	8364	8373							-0.012720180792030078
EVNEKKGRI	9	Unmodified	_EVNEKKGRI_					0	0	0			REV__ENSG00000164893|ENST00000297524|SLC7A13	REV__ENSG00000164893|ENST00000297524|SLC7A13	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.7805786132812	2	536.809105	1071.60366	-1.6369	-0.00087873	0.8598	0.00046155	-0.77715	-0.00041718	536.8096074072167	51.064	0.80094	47.891	47.671	48.472	-3.1734					30	15	3	0	0	0	0.027452	1	2962	2962		49.536	0.094497	1	51223	+		10207	21032	8365	8374	11044	11044					0.07071932737562747
EVNEKKGRI	9	Unmodified	_EVNEKKGRI_					0	0	0			REV__ENSG00000164893|ENST00000297524|SLC7A13	REV__ENSG00000164893|ENST00000297524|SLC7A13	MULTI-MATCH	OvCa9_classI_Rep2	2		2	536.809105	1071.60366	-2.0109	-0.0010795	2.4134	0.0012955	0.4025	0.00021607	537.3114605614543	50.8	0.39439	48.006	47.778	48.172	-2.794	0.057674	0.00095654	NaN	49.536	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16825	+		10208	21032	8365	8374							0.07071932737562747
EVNGLARHGA	10	Unmodified	_EVNGLARHGA_					0	0	0			REV__ENST00000392357.1_1_17:80012338-80013241:+|nuORF	REV__ENST00000392357.1_1_17:80012338-80013241:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.7890014648438	2	512.270147	1022.52574	1.9133	0.00098014	2.5889	0.0013262	4.5022	0.0023064	512.2714317394128	107.32	0.41798	107.32	107.06	107.48	0					12	9	2	0	0	0	0.026734	1	12078	12078		47.657	5.1829	1	165370	+		10209	25255	8366	8375	11045	11045					0.015379198721802823
EVNISEGHS	9	Unmodified	_EVNISEGHS_					0	0	0			REV__ENSG00000143126|ENST00000271332|CELSR2	REV__ENSG00000143126|ENST00000271332|CELSR2	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.78369140625	2	486.225071	970.435589	-0.28371	-0.00013795	-0.94378	-0.00045889	-1.2275	-0.00059684	486.2244558022497	73.836	0.68433	71.436	71.106	71.79	-2.3999					16	12	2	0	0	0	0.027452	1	5993	5993		27.047	0	1	15383	+		10210	19817	8367	8376	11046	11046					-0.05081174246902265
EVNISEGHS	9	Unmodified	_EVNISEGHS_					0	0	0			REV__ENSG00000143126|ENST00000271332|CELSR2	REV__ENSG00000143126|ENST00000271332|CELSR2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.7862548828125	2	486.225071	970.435589	-0.18911	-9.195E-05	-1.7182	-0.00083545	-1.9073	-0.0009274	486.22403329100365	74.67	0.62963	71.439	71.144	71.773	-3.2308					20	12	2	0	0	0	0.027441	1	5885	5885		49.442	12.413	1	72807	+		10211	19817	8367	8376	11047	11047					-0.05081174246902265
EVNKHETALE	10	Unmodified	_EVNKHETALE_					0	0	0		FAM111B|p.E418Gfs*12|1|0.09|ENSG00000189057|chr11:59125346-59125347|-/G|frameshift_variant;nc|ENSG00000189057|Q6SJ93-2|FAM111B;ENSG00000189057|ENST00000343597|FAM111B	FAM111B|p.E418Gfs*12|1|0.09|ENSG00000189057|chr11:59125346-59125347|-/G|frameshift_variant	FAM111B|p.E418Gfs*12|1|0.09|ENSG00000189057|chr11:59125346-59125347|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	585.292236328125	2	585.293485	1168.57242	-0.4687	-0.00027432	1.2552	0.00073469	0.78655	0.00046036	585.2946417189139	113.45	1.0333	112.38	112.1	113.13	-1.0753					31	19	2	0	0	0	0.49558	1	8335	8335		54.776	8.8041	1	130150			10212	8530	8368	8377	11048	11048					-0.005126850871874922
EVNLKKKSY	9	Unmodified	_EVNLKKKSY_					0	0	0		ENSG00000120699|ENST00000389704|EXOSC8	ENSG00000120699|ENST00000389704|EXOSC8	ENSG00000120699|ENST00000389704|EXOSC8	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.8229370117188	2	554.821681	1107.62881	-0.95159	-0.00052797	0.22509	0.00012489	-0.7265	-0.00040308	554.8217207807254	72.462	1.2623	69.066	68.813	70.076	-3.3961					53	25	3	0	0	0	0.10363	1	5579	5579		96.19	0	1	373880			10213	3445	8369	8378	11049	11049					0.07929987540137517
EVNLKKKSY	9	Unmodified	_EVNLKKKSY_					0	0	0		ENSG00000120699|ENST00000389704|EXOSC8	ENSG00000120699|ENST00000389704|EXOSC8	ENSG00000120699|ENST00000389704|EXOSC8	MULTI-MATCH	OvCa9_classI_Rep2	2		2	554.821681	1107.62881	1.1726	0.00065058	-1.8124	-0.0010056	-0.63982	-0.00035499	554.8204591863113	71.566	1.0476	69.058	68.752	69.799	-2.5071	-0.0036625	-0.0016325	NaN	96.19	35	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85923			10214	3445	8369	8378							0.07929987540137517
EVNLLPLLL	9	Unmodified	_EVNLLPLLL_					0	0	0			REV__ENSG00000131400|ENST00000253719|NAPSA	REV__ENSG00000131400|ENST00000253719|NAPSA	MULTI-SECPEP	OvCa9_classI_Rep2	2	512.810546875	2	512.326068	1022.63758	-1.7012	-0.00087159	-2.0447	-0.0010475	-3.7459	-0.0019191	512.3249313057114	62.317	1.0151	59.557	59.236	60.251	-2.7593					30	19	2	0	0	0	0.027455	1	4707	4707		42.396	6.7778	1	82234	+		10215	19013	8370	8379	11050	11050					0.12716961176613495
EVNLLPLLL	9	Unmodified	_EVNLLPLLL_					0	0	0			REV__ENSG00000131400|ENST00000253719|NAPSA	REV__ENSG00000131400|ENST00000253719|NAPSA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.8114013671875	2	512.326068	1022.63758	-0.62541	-0.00032041	-3.0237	-0.0015491	-3.6491	-0.0018695	512.3244615568492	63.25	0.81657	59.775	59.529	60.345	-3.475					30	16	3	0	0	0	0.027455	1	4489	4489		51.335	15.717	1	97624	+		10216	19013	8370	8379	11051	11051					0.12716961176613495
EVNLPDEMHS	10	Unmodified	_EVNLPDEMHS_					0	0	0		nc|ENSG00000115750|Q53T94-3|TAF1B;nc|ENSG00000115750|Q53T94-2|TAF1B;ENSG00000115750|ENST00000263663|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	nc|ENSG00000115750|Q53T94-3|TAF1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.3023071289062	2	585.75842	1169.50229	2.5458	0.0014912	0.8655	0.00050697	3.4113	0.0019982	585.7587526054889	90.314	0.40121	90.314	90.06	90.462	0					15	9	2	0	0	0	0.026891	1	9666	9666		24.519	1.4767	1	277230			10217	3123	8371	8380	11052	11052					-0.07568306747293718
EVNQLQRTI	9	Unmodified	_EVNQLQRTI_					0	0	0			REV__L1MC4_dup1061|chr1:148102763-148102938:-|1.038919454740557|0.3999840896183908|1.38|326.0|2|1|sense	REV__L1MC4_dup1061|chr1:148102763-148102938:-|1.038919454740557|0.3999840896183908|1.38|326.0|2|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.8553466796875	2	550.806562	1099.59857	0.10097	5.5616E-05	1.0576	0.00058255	1.1586	0.00063817	550.8079335470624	63.057	0.2773	63.057	62.902	63.179	0					20	6	4	0	0	0	0.027432	1	5651	5651		77.318	3.0625	1	596270	+		10218	28423	8372	8381	11053	11053					0.05275628874960603
EVNVDKMTI	9	Unmodified	_EVNVDKMTI_					0	0	0			REV__ENSG00000138823|ENST00000265517|MTTP	REV__ENSG00000138823|ENST00000265517|MTTP	MULTI-SECPEP	OvCa9_classI_Rep3	3	523.8405151367188	2	524.7708	1047.52705	-0.90507	-0.00047495	-0.11356	-5.9593E-05	-1.0186	-0.00053455	525.271854663764	102.51	0.26057	100.99	100.84	101.1	-1.5211					6	4	2	0	0	0	0.027295	1	7067	7067		84.916	21.937	1	8780.3	+		10219	19580	8373	8382	11054	11054					0.005183731260785862
EVNVSCWPN	9	Carbamidomethyl (C)	_EVNVSC(Carbamidomethyl (C))WPN_	EVNVSC(1)WPN		EVNVSC(88)WPN		0	1	0		ENST00000453080.5_1_15:43876679-43877050:-|nuORF	ENST00000453080.5_1_15:43876679-43877050:-|nuORF	ENST00000453080.5_1_15:43876679-43877050:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	552.3032836914062	2	552.742573	1103.47059	-0.70578	-0.00039012	3.6755	0.0020316	2.9697	0.0016415	552.744500111243	102.86	0.94167	101.34	101	101.94	-1.5211					27	17	2	0	0	0	0.027304	1	7060	7060		87.696	39.737	1	51397			10220	12062	8374	8383	11055	11055	136				-0.07700254710584886
EVPAALKRL	9	Unmodified	_EVPAALKRL_					0	0	0		ENST00000497393.1_1_3:120469390-120469879:+|nuORF;ENSG00000153767|ENST00000283875|GTF2E1	ENST00000497393.1_1_3:120469390-120469879:+|nuORF	ENST00000497393.1_1_3:120469390-120469879:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	498.8127136230469	2	498.813659	995.612765	-0.10557	-5.2658E-05	-0.22118	-0.00011033	-0.32674	-0.00016298	498.8134286419306	107.86	2.1308	106.67	106.38	108.51	-1.1978					94	40	3	0	0	0	0.38529	1	7694	7694		53.351	3.3269	1	572750			10221	5690	8375	8384	11056	11056					0.114783260938907
EVPETLHLD	9	Unmodified	_EVPETLHLD_					0	0	0		nc|ENSG00000174945|Q400G9-2|AMZ1	nc|ENSG00000174945|Q400G9-2|AMZ1	nc|ENSG00000174945|Q400G9-2|AMZ1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.7701416015625	2	526.766571	1051.51859	1.7636	0.00092902	0.43116	0.00022712	2.1948	0.0011561	526.76673858604	91.987	1.0099	91.987	91.625	92.635	0					33	23	2	0	0	0	0.027462	1	9895	9895		45.952	0	1	2113300			10222	15187	8376	8385	11057	11057					-0.005108575189069597
EVPEVEVTY	9	Unmodified	_EVPEVEVTY_					0	0	0		tr|A0A7D6ZYS4|A0A7D6ZYS4_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_17565PE=4SV=1	tr|A0A7D6ZYS4|A0A7D6ZYS4_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_17565PE=4SV=1	tr|A0A7D6ZYS4|A0A7D6ZYS4_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_17565PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	532.7631225585938	2	532.760955	1063.50736	1.0974	0.00058466	3.1901	0.0016995	4.2875	0.0022842	532.7625104763312	113.64	2.2165	112.57	112.01	114.22	-1.0753					113	43	4	0	0	0	0.38529	1	8378	8378		53.351	14.099	1	496900			10223	35929	8377	8386	11058	11058					-0.02185679613035063
EVPEVEVTY	9	Unmodified	_EVPEVEVTY_					0	0	0		tr|A0A7D6ZYS4|A0A7D6ZYS4_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_17565PE=4SV=1	tr|A0A7D6ZYS4|A0A7D6ZYS4_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_17565PE=4SV=1	tr|A0A7D6ZYS4|A0A7D6ZYS4_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_17565PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	532.7630615234375	2	532.760955	1063.50736	1.0391	0.00055361	3.0044	0.0016006	4.0435	0.0021542	532.7625453162051	119.44	1.5811	118.41	117.88	119.46	-1.0271					87	31	5	0	0	0	0.46377	1	9071	9071		45.952	5.3793	1	495830			10224	35929	8377	8386	11059	11059					-0.02185679613035063
EVPGAKKI	8	Unmodified	_EVPGAKKI_					0	0	0			REV__ENST00000601217.1_1_19:40947039-40947291:-|nuORF	REV__ENST00000601217.1_1_19:40947039-40947291:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	421.2601013183594	2	421.260728	840.506903	0.1688	7.111E-05	-3.1201	-0.0013144	-2.9513	-0.0012433	421.2592965587955	134.89	1.4682	134.66	133.66	135.13	-0.22696					55	29	3	0	0	0	0.73938	1	13371	13371		31.955	1.4512	1	378840	+		10225	28035	8378	8387	11060	11060					0.08026990248424681
EVPIKRLIK	9	Unmodified	_EVPIKRLIK_					0	0	0			REV__nc|ENSG00000070047|Q9P1Y6-2|PHRF1	REV__nc|ENSG00000070047|Q9P1Y6-2|PHRF1	MULTI-MSMS	OvCa9_classI_Rep3	3	548.3656616210938	2	548.366059	1094.71756	0.34637	0.00018994	-0.49439	-0.00027111	-0.14802	-8.1168E-05	548.3655745449837	67.748	1.9986	64.86	64.54	66.539	-2.8873					104	39	4	0	0	0	0.50149	1	2916	2916		42.396	1.618	1	404220	+		10226	16875	8379	8388	11061	11061					0.17399447570460325
EVPLFCQP	8	Unmodified	_EVPLFCQP_					0	0	0		ENST00000566104.1_1_16:67189803-67193780:-|nuORF	ENST00000566104.1_1_16:67189803-67193780:-|nuORF	ENST00000566104.1_1_16:67189803-67193780:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	467.2804260253906	2	466.730946	931.447339	-0.1879	-8.7699E-05	-4.4647	-0.0020838	-4.6526	-0.0021715	466.7290321155091	99.133	2.2991	97.448	95.845	98.144	-1.685					60	44	2	0	0	0	0.028476	1	6469	6469		29.15	4.9468	1	128390			10227	13838	8380	8389	11062	11062					-0.02112648757270108
EVPLFCQP	8	Unmodified	_EVPLFCQP_					0	0	0		ENST00000566104.1_1_16:67189803-67193780:-|nuORF	ENST00000566104.1_1_16:67189803-67193780:-|nuORF	ENST00000566104.1_1_16:67189803-67193780:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	466.730946	931.447339	-0.44399	-0.00020722	-4.4373	-0.002071	-4.8812	-0.0022782	466.7290171987455	98.625	1.5772	97.732	96.529	98.106	-0.89305	0.20811	-9.6921E-05	NaN	29.15	50	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31862			10228	13838	8380	8389							-0.02112648757270108
EVPLFCQP	8	Unmodified	_EVPLFCQP_					0	0	0		ENST00000566104.1_1_16:67189803-67193780:-|nuORF	ENST00000566104.1_1_16:67189803-67193780:-|nuORF	ENST00000566104.1_1_16:67189803-67193780:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	466.730946	931.447339	-0.80555	-0.00037598	-4.0996	-0.0019134	-4.9052	-0.0022894	466.72917803469926	99.717	2.0571	97.391	96.536	98.593	-2.3253	-0.13245	0.00021825	NaN	29.15	60	39	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125640			10229	13838	8380	8389							-0.02112648757270108
EVPLGVFAAF	10	Unmodified	_EVPLGVFAAF_					0	0	0			REV__nc|ENSG00000198612|Q99627-2|COPS8	REV__nc|ENSG00000198612|Q99627-2|COPS8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.8119506835938	2	525.286943	1048.55933	-1.6753	-0.00088003	-2.5769	-0.0013536	-4.2522	-0.0022336	525.285232612994	71.937	1.5503	68.48	68.222	69.773	-3.4563					49	31	3	0	0	0	0.026669	1	5476	5476		30.504	0.18592	1	113650	+		10230	23035	8381	8390	11063	11063					0.03699528591369017
EVPLGVFAAF	10	Unmodified	_EVPLGVFAAF_					0	0	0			REV__nc|ENSG00000198612|Q99627-2|COPS8	REV__nc|ENSG00000198612|Q99627-2|COPS8	MULTI-MATCH	OvCa9_classI_Rep2	2		2	525.286943	1048.55933	0.41936	0.00022029	-4.9071	-0.0025776	-4.4877	-0.0023573	525.2842899218485	70.902	0.98669	68.331	67.965	68.952	-2.5707	-0.074626	-0.0018003	NaN	30.504	32	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37737	+		10231	23035	8381	8390							0.03699528591369017
EVPLLLLAR	9	Unmodified	_EVPLLLLAR_					0	0	0			REV__ENST00000464665.1_1_1:6609704-6614547:-|nuORF	REV__ENST00000464665.1_1_1:6609704-6614547:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	512.2800903320312	2	512.331685	1022.64882	1.5843	0.00081168	-1.8375	-0.00094138	-0.25317	-0.00012971	512.3304518166731	112.87	0.53864	111.8	111.56	112.1	-1.0753					15	10	2	0	0	0	0.027462	1	8280	8280		29.15	3.6994	1	21077	+		10232	20733	8382	8391	11064	11064					0.13839783270759654
EVPPPVEKQL	10	Unmodified	_EVPPPVEKQL_					0	0	0		CSGALNACT2|p.Q416K|1|0.28|ENSG00000169826|chr10:43167090-43167090|C/A|missense_variant	CSGALNACT2|p.Q416K|1|0.28|ENSG00000169826|chr10:43167090-43167090|C/A|missense_variant	CSGALNACT2|p.Q416K|1|0.28|ENSG00000169826|chr10:43167090-43167090|C/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	568.7936401367188	2	568.321514	1134.62847	-1.1919	-0.00067739	0.21583	0.00012266	-0.97609	-0.00055473	568.3216127876516	99.954	0.7923	99.123	98.865	99.658	-0.83052					29	15	3	0	0	0	0.026849	1	9183	9183		32.812	12.816	1	30266			10233	685	8383	8392	11065	11065					0.06654567820282864
EVPREALEP	9	Unmodified	_EVPREALEP_					0	0	0		nc|ENSG00000100918|O95072-2|REC8;ENSG00000100918|ENST00000611366|REC8	nc|ENSG00000100918|O95072-2|REC8	nc|ENSG00000100918|O95072-2|REC8	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.293212890625	2	520.274564	1038.53457	2.6481	0.0013777	-0.70409	-0.00036632	1.944	0.0010114	520.2739614245799	88.632	0.54173	88.632	88.342	88.883	0					18	12	2	0	0	0	0.027295	1	9409	9409		74.255	7.8258	1	223610			10234	2122	8384	8393	11066	11066					0.016848487179913718
EVPREALEP	9	Unmodified	_EVPREALEP_					0	0	0		nc|ENSG00000100918|O95072-2|REC8;ENSG00000100918|ENST00000611366|REC8	nc|ENSG00000100918|O95072-2|REC8	nc|ENSG00000100918|O95072-2|REC8	MULTI-MATCH	OvCa9_classI_Rep3	3		2	520.274564	1038.53457	-0.49533	-0.00025771	2.5265	0.0013145	2.0312	0.0010568	520.2755783963228	90.799	0.25434	88.718	88.619	88.873	-2.0805	0.043079	0.0029345	NaN	74.255	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3815.5			10235	2122	8384	8393							0.016848487179913718
EVQDLVKEL	9	Unmodified	_EVQDLVKEL_					0	0	0			REV__ENST00000524195.1_1_8:75275206-75401007:+|nuORF	REV__ENST00000524195.1_1_8:75275206-75401007:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	536.798095703125	2	536.797872	1071.58119	-0.77176	-0.00041428	0.30145	0.00016182	-0.47031	-0.00025246	536.7979815021174	107.12	1.3695	106.82	106.47	107.84	-0.30836					67	27	3	0	0	0	0.064985	1	10006	10006		110.12	3.1124	1	594800	+		10236	17663	8385	8394	11067	11067					0.0482628854927043
EVQEIHNN	8	Unmodified	_EVQEIHNN_					0	0	0			REV__tr|A0A553SLG0|A0A553SLG0_NIACIThymidylatesynthaseOS=NialliacirculansOX=1397GN=thyAPE=3SV=1	REV__tr|A0A553SLG0|A0A553SLG0_NIACIThymidylatesynthaseOS=NialliacirculansOX=1397GN=thyAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.7708435058594	2	491.733063	981.451573	-0.065935	-3.2422E-05	4.0482	0.0019906	3.9823	0.0019582	491.73483048580385	64.881	0.36253	64.881	64.71	65.072	0					15	8	2	0	0	0	0.028476	1	5950	5950		29.15	3.6994	1	429010	+		10237	30223	8386	8395	11068	11068					-0.0398946800999056
EVQFPPKP	8	Unmodified	_EVQFPPKP_					0	0	0		nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2;ENST00000530992.1_1_17:32364642-32365872:-|nuORF	nc|ENSG00000146872|Q86UE8-3|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.8095703125	2	471.258185	940.501818	-0.33263	-0.00015676	-4.1355	-0.0019489	-4.4681	-0.0021057	471.256077693069	63.699	0.51887	63.699	63.455	63.974	0					21	12	3	0	0	0	0.028476	1	5753	5753		71.877	16.373	1	243870			10238	5315	8387	8396	11069	11069					0.029186863858058132
EVQGTLQRPLV	11	Unmodified	_EVQGTLQRPLV_					0	0	0		LRP10|p.S103Gfs*40|1|0.07|ENSG00000197324|chr14:22875145-22875146|-/GGTAGGCAAAG|frameshift_variant;LRP10|p.I505Hfs*3|1|0.23|ENSG00000197324|chr14:22876775-22876778|CCAT/-|frameshift_variant;nc|ENSG00000197324|Q7Z4F1-2|LRP10;ENSG00000197324|ENST00000359591|LRP10	LRP10|p.S103Gfs*40|1|0.07|ENSG00000197324|chr14:22875145-22875146|-/GGTAGGCAAAG|frameshift_variant	LRP10|p.S103Gfs*40|1|0.07|ENSG00000197324|chr14:22875145-22875146|-/GGTAGGCAAAG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	620.8318481445312	2	620.356419	1238.69829	-1.2775	-0.00079253	-2.1613	-0.0013408	-3.4388	-0.0021333	620.3568959121486	99.233	0.59741	98.34	97.957	98.554	-0.89305					18	11	3	0	0	0	0.025315	1	9028	9028		54.776	13.35	1	20566			10239	8702	8388	8397	11070	11070					0.088484464889234
EVQGWKQR	8	Unmodified	_EVQGWKQR_					0	0	0		ENSG00000165953|ENST00000677451|SERPINA12	ENSG00000165953|ENST00000677451|SERPINA12	ENSG00000165953|ENST00000677451|SERPINA12	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2833251953125	2	515.775065	1029.53558	1.9423	0.0010018	2.4245	0.0012505	4.3668	0.0022523	516.2766360684694	79.801	0.94408	79.801	79.585	80.529	0					37	22	3	0	0	0	0.028476	1	8138	8138		14.865	0	1	1310500			10240	6620	8389	8398	11071	11071					0.021991078775727146
EVQLFKVM	8	Unmodified	_EVQLFKVM_					0	0	0			REV__ENSG00000100038|ENST00000357179|TOP3B	REV__ENSG00000100038|ENST00000357179|TOP3B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.8009948730469	2	497.275521	992.536489	-1.2001	-0.00059678	4.0656	0.0020217	2.8655	0.0014249	497.27733808469753	43.896	0.5966	40.888	40.693	41.289	-3.0074					15	11	2	0	0	0	0.028476	1	2182	2182		38.806	0	1	53024	+		10241	17356	8390	8399	11072	11072					0.039921862022538335
EVQLRAPLE	9	Unmodified	_EVQLRAPLE_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.2801513671875	2	527.798206	1053.58186	-0.56345	-0.00029739	3.7212	0.001964	3.1577	0.0016666	527.8001101997828	109.34	1.5233	108.2	107.72	109.24	-1.1444					73	28	4	0	0	0	0.027441	1	7940	7940		40.778	0	1	102290			10242	7388	8391	8400	11073	11073					0.05721127988999797
EVQNGKGLKK	10	Unmodified	_EVQNGKGLKK_					0	0	0			REV__ENSG00000112619|ENST00000230381|PRPH2	REV__ENSG00000112619|ENST00000230381|PRPH2	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3383178710938	2	550.824755	1099.63496	-1.2012	-0.00066167	0.79104	0.00043572	-0.41019	-0.00022594	550.8251596503566	27.666	0.40045	27.666	27.39	27.791	0					10	7	2	0	0	0	0.026891	1	824	824		24.519	3.5723	1	23235	+		10243	18108	8392	8401	11074	11074					0.0891250577167284
EVQPLHPDK	9	Unmodified	_EVQPLHPDK_					0	0	0		ENSG00000196517|ENST00000372310|SLC6A9;nc|ENSG00000196517|P48067-3|SLC6A9;nc|ENSG00000196517|P48067|SLC6A9	ENSG00000196517|ENST00000372310|SLC6A9	ENSG00000196517|ENST00000372310|SLC6A9	MULTI-MSMS	OvCa9_classI_Rep2	2	531.7821044921875	2	531.782556	1061.55056	-1.5399	-0.00081889	1.1515	0.00061235	-0.38839	-0.00020654	531.7830281716216	47.648	1.6888	44.939	44.39	46.079	-2.7097					102	33	5	0	0	0	0.35694	1	2950	2950		56.434	14.038	1	612800			10244	8619	8393	8402	11075	11075					0.022245549548870258
EVQPLHPDK	9	Unmodified	_EVQPLHPDK_					0	0	0		ENSG00000196517|ENST00000372310|SLC6A9;nc|ENSG00000196517|P48067-3|SLC6A9;nc|ENSG00000196517|P48067|SLC6A9	ENSG00000196517|ENST00000372310|SLC6A9	ENSG00000196517|ENST00000372310|SLC6A9	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.7841796875	2	531.782556	1061.55056	-0.8739	-0.00046473	-0.0088073	-4.6836E-06	-0.88271	-0.00046941	531.7824678459274	47.97	2.462	44.862	44.287	46.749	-3.1077					144	47	5	0	0	0	0.10502	1	2611	2611		95.815	8.0609	1	3227400			10245	8619	8393	8402	11076	11076					0.022245549548870258
EVQQLLPEP	9	Unmodified	_EVQQLLPEP_					0	0	0		ENST00000515619.1_1_17:48627622-48628299:+|nuORF;ENST00000504265.5_1_17:48627490-48628667:+|nuORF;ENST00000504334.5_1_17:48627490-48633020:+|nuORF;nc|ENSG00000006282|Q8TB22-4|SPATA20;ENST00000503063.5_1_17:48625445-48628667:+|nuORF;nc|ENSG00000006282|Q8TB22-3|SPATA20;nc|ENSG00000006282|Q8TB22|SPATA20;ENSG00000006282|ENST00000006658|SPATA20	ENST00000515619.1_1_17:48627622-48628299:+|nuORF	ENST00000515619.1_1_17:48627622-48628299:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.7986450195312	2	526.784764	1051.55498	0.169	8.9029E-05	2.1194	0.0011165	2.2884	0.0012055	527.2863602461833	162.35	0.20045	162.35	162.28	162.48	0					5	3	2	0	0	0	0.027455	1	19044	19044		42.396	0	1	30072			10246	874	8394	8403	11077	11077					0.031260193778280154
EVQQRQPEP	9	Unmodified	_EVQQRQPEP_					0	0	0			REV__nc|ENSG00000145734|A6H8Y1-7|BDP1	REV__nc|ENSG00000145734|A6H8Y1-7|BDP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.8047485351562	2	555.780544	1109.54654	2.3121	0.001285	2.8837	0.0016027	5.1958	0.0028878	555.7820032678206	87.076	0.41451	87.076	86.801	87.216	0					15	9	2	0	0	0	0.027185	1	9210	9210		93.195	13.744	1	318220	+		10247	19980	8395	8404	11078	11078					-0.0038553453880467714
EVQSERVMPP	10	Unmodified	_EVQSERVMPP_					0	0	0		ENST00000413384.6_1_7:150756714-150759062:+|nuORF	ENST00000413384.6_1_7:150756714-150759062:+|nuORF	ENST00000413384.6_1_7:150756714-150759062:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	585.3515014648438	2	586.29243	1170.57031	-0.5936	-0.00034802	-1.6104	-0.00094418	-2.204	-0.0012922	586.291074799831	74.787	0.62655	71.556	71.337	71.963	-3.2308					26	12	3	0	0	0	0.026994	1	5854	5854		13.454	0	1	62826			10248	11561	8396	8405	11079	11079					-0.008154370966167335
EVQSFTNLI	9	Unmodified	_EVQSFTNLI_					0	0	0			REV__ENST00000217109.8_1_20:54974293-54974365:+|nuORF	REV__ENST00000217109.8_1_20:54974293-54974365:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	525.778564453125	2	525.776939	1049.53933	1.4188	0.000746	1.2615	0.00066327	2.6804	0.0014093	525.7774343914792	118.69	0.6623	118.69	118.39	119.05	0					32	13	3	0	0	0	0.3249	1	13605	13605		60.118	7.1816	1	169100	+		10249	23727	8397	8406	11080	11080					0.016537328607682866
EVQSQVEEL	9	Unmodified	_EVQSQVEEL_					0	0	0		ENSG00000168172|ENST00000307602|HOOK3;ENST00000527306.1_1_8:42752256-42852891:+|nuORF	ENSG00000168172|ENST00000307602|HOOK3	ENSG00000168172|ENST00000307602|HOOK3	MULTI-SECPEP	OvCa9_classI_Rep3	3	531.2748413085938	2	530.761486	1059.50842	-1.0032	-0.00053248	-3.9225	-0.0020819	-4.9257	-0.0026144	530.7593954494015	86.067	1.0515	83.847	83.386	84.437	-2.2204					29	20	2	0	0	0	0.027459	1	5054	5054		44.377	22.691	1	19291			10250	6878	8398	8407	11081	11081					-0.018954652441152575
EVQTLWLTL	9	Unmodified	_EVQTLWLTL_					0	0	0			REV__MKI67|p.K2670Nfs*23|1|0.03|ENSG00000148773|chr10:128103824-128103836|CTTTTCCTTAGGT/-|frameshift_variant	REV__MKI67|p.K2670Nfs*23|1|0.03|ENSG00000148773|chr10:128103824-128103836|CTTTTCCTTAGGT/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	551.8099365234375	2	551.810782	1101.60701	2.0539	0.0011334	-3.1254	-0.0017246	-1.0715	-0.00059126	551.8091639670778	95.182	0.66427	95.182	94.992	95.656	0					41	15	3	0	0	0	0.3076	1	10378	10378		62.107	5.3864	1	2279700	+		10251	20125	8399	8408	11082	11082					0.06027182791558516
EVRCDYVDET	10	Unmodified	_EVRCDYVDET_					0	0	0			REV__ENSG00000204287|ENST00000395388|HLA-DRA	REV__ENSG00000204287|ENST00000395388|HLA-DRA	MULTI-SECPEP	OvCa99_classI_Rep5	1	613.824462890625	2	614.76116	1227.50777	2.7313	0.0016791	0.78725	0.00048397	3.5186	0.0021631	614.7615886464621	87.891	0.29042	87.891	87.712	88.003	0					10	6	2	0	0	0	0.027056	1	9319	9319		14.865	0	1	285660	+		10252	23138	8400	8409	11083	11083					-0.0968862795550649
EVREAAGRLD	10	Unmodified	_EVREAAGRLD_					0	0	0			REV__ENST00000465425.1_1_19:36497111-36499583:-|nuORF	REV__ENST00000465425.1_1_19:36497111-36499583:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.3174438476562	2	558.293819	1114.57309	-1.4011	-0.00078222	0.79453	0.00044358	-0.60655	-0.00033863	558.2942478599156	108.1	1.0004	106.22	105.97	106.97	-1.8785					37	19	2	0	0	0	0.026523	1	9966	9966		52.937	5.2794	1	68370	+		10253	22231	8401	8410	11084	11084					0.02038154352521815
EVRERAARK	9	Unmodified	_EVRERAARK_					0	0	0		tr|A0A0J1IPB7|A0A0J1IPB7_NIACIDNA-bindingproteinOS=NialliacirculansOX=1397GN=ABW02_02585PE=3SV=1	tr|A0A0J1IPB7|A0A0J1IPB7_NIACIDNA-bindingproteinOS=NialliacirculansOX=1397GN=ABW02_02585PE=3SV=1	tr|A0A0J1IPB7|A0A0J1IPB7_NIACIDNA-bindingproteinOS=NialliacirculansOX=1397GN=ABW02_02585PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	558.240478515625	2	557.825621	1113.63669	1.6937	0.00094478	3.7106	0.0020699	5.4042	0.0030146	557.8275654224785	128.93	0.49535	128.7	128.48	128.97	-0.22696					17	9	2	0	0	0	0.027462	1	12655	12655		34.173	0	1	20682			10254	32980	8402	8411	11085	11085					0.08441559580273861
EVRERELQ	8	Unmodified	_EVRERELQ_					0	0	0			REV__ENSG00000164061|ENST00000296452|BSN	REV__ENSG00000164061|ENST00000296452|BSN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.331787109375	2	529.783087	1057.55162	3.2187	0.0017052	2.7845	0.0014752	6.0032	0.0031804	530.2867683106551	132.01	0.36873	130.51	130.32	130.69	-1.5015					10	6	2	0	0	0	0.028476	1	12709	12709		11.511	0	1	13776	+		10255	20930	8403	8412	11086	11086					0.025147693238068314
EVRFHVEP	8	Unmodified	_EVRFHVEP_					0	0	0			REV__ENST00000262741.9_2_1:46597677-46597770:-|nuORF	REV__ENST00000262741.9_2_1:46597677-46597770:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.27996826171875	2	506.764166	1011.51378	2.0114	0.0010193	3.8551	0.0019536	5.8665	0.0029729	506.7662070797527	92.675	0.79405	92.675	92.385	93.179	0					30	18	2	0	0	0	0.028476	1	10001	10001		29.15	0	1	1256900	+		10256	23984	8404	8413	11087	11087					0.008483031289983956
EVRGHLGRA	9	Unmodified	_EVRGHLGRA_					0	0	0		ENSG00000275793|ENST00000619918|RIMBP3;ENSG00000274600|ENST00000620804|RIMBP3B;ENSG00000183246|ENST00000433039|RIMBP3C	ENSG00000275793|ENST00000619918|RIMBP3	ENSG00000275793|ENST00000619918|RIMBP3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.77886962890625	2	497.780682	993.546811	-0.11829	-5.8881E-05	3.4857	0.0017351	3.3674	0.0016762	497.7820974249047	66.81	0.83896	63.32	63.049	63.888	-3.4902					25	16	2	0	0	0	0.027455	1	4934	4934		26.693	0	1	49212			10257	8058	8405	8414	11088	11088					0.04977929971710182
EVRGHLKR	8	Unmodified	_EVRGHLKR_					0	0	0		ENSG00000137573|ENST00000402687|SULF1;ENST00000521946.5_1_8:70505207-70554528:+|nuORF	ENSG00000137573|ENST00000402687|SULF1	ENSG00000137573|ENST00000402687|SULF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.77886962890625	2	497.798875	993.583196	0.86	0.00042811	0.98902	0.00049233	1.849	0.00092044	497.79931862404766	67.354	0.74167	63.863	63.64	64.381	-3.4902					27	14	3	0	0	0	0.028476	1	4934	4934		30.504	0	1	91639			10258	4599	8406	8415	11089	11089					0.0861480686842242
EVRGLAYII	9	Unmodified	_EVRGLAYII_					0	0	0			REV__nc|ENSG00000054983|P54803-5|GALC	REV__nc|ENSG00000054983|P54803-5|GALC	MULTI-MSMS	OvCa9_classI_Rep2	2	517.304443359375	2	517.305667	1032.59678	0.50544	0.00026147	-0.58019	-0.00030013	-0.074744	-3.8665E-05	517.3051776406942	124.31	0.98633	124.07	123.68	124.67	-0.23193					45	19	3	0	0	0	0.44568	1	12078	12078		47.657	1.6851	1	148560	+		10259	16705	8407	8416	11090	11090					0.08178619856994374
EVRGSFLAAC	10	Unmodified	_EVRGSFLAAC_					0	0	0		ENSG00000181626|ENST00000587848|ANKRD62	ENSG00000181626|ENST00000587848|ANKRD62	ENSG00000181626|ENST00000587848|ANKRD62	MULTI-MSMS	OvCa9_classI_Rep2	2	526.7631225585938	2	526.763309	1051.51206	-1.1915	-0.00062765	1.0027	0.00052819	-0.18881	-9.946E-05	526.7636529760721	120.92	1.9767	120.72	120.16	122.14	-0.19718					97	39	4	0	0	0	0.67931	1	11692	11692		32.812	0	1	267620			10260	7940	8408	8417	11091	11091					-0.011630739512838772
EVRHIQKL	8	Unmodified	_EVRHIQKL_					0	0	0		HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|370|2|anti-sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|370|2|anti-sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|370|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	511.8086853027344	2	511.808908	1021.60326	-1.8602	-0.00095206	1.7701	0.00090597	-0.090053	-4.609E-05	511.8096472275158	37.824	1.1833	35.115	34.83	36.013	-2.7097					51	23	4	0	0	0	0.73205	1	1722	1722		35.618	3.6634	1	203000			10261	14404	8409	8418	11092	11092					0.09332557808374986
EVRKKYNKMDL	11	Unmodified	_EVRKKYNKMDL_					0	0	0		tr|A0A7D6ZGH3|A0A7D6ZGH3_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_18625PE=4SV=1	tr|A0A7D6ZGH3|A0A7D6ZGH3_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_18625PE=4SV=1	tr|A0A7D6ZGH3|A0A7D6ZGH3_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_18625PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.5879211425781	3	475.262383	1422.76532	-0.84554	-0.00040185	4.135	0.0019652	3.2895	0.0015634	475.60011476298695	27.892	0.15006	27.892	27.791	27.941	0					4	2	2	0	0	0	0.025818	1	863	863		28.384	4.152	1	7450.4			10262	35544	8410	8419	11093	11093					0.07084733708325075
EVRLSNKKGEI	11	Unmodified	_EVRLSNKKGEI_					0	0	0			REV__ENSG00000079819|ENST00000337057|EPB41L2	REV__ENSG00000079819|ENST00000337057|EPB41L2	MULTI-MSMS	OvCa9_classI_Rep2	2	424.912841796875	3	424.91386	1271.71975	-1.447	-0.00061484	1.2804	0.00054407	-0.16656	-7.0772E-05	424.9143610103723	63.409	1.7871	60.665	60.004	61.791	-2.7444					105	33	5	0	0	0	0.69735	1	4803	4803		30.569	2.9249	1	695510	+		10263	17046	8411	8420	11094	11094					0.09475831517625011
EVRLSNKKGEI	11	Unmodified	_EVRLSNKKGEI_					0	0	0			REV__ENSG00000079819|ENST00000337057|EPB41L2	REV__ENSG00000079819|ENST00000337057|EPB41L2	MULTI-MSMS	OvCa9_classI_Rep4_	4	424.91497802734375	3	424.91386	1271.71975	0.28943	0.00012298	-0.26616	-0.00011309	0.023269	9.8874E-06	424.91372798493006	64.335	1.4091	60.86	60.539	61.948	-3.475					93	28	6	0	0	0	0.68391	1	4581	4581		35.178	7.5343	1	1005400	+		10264	17046	8411	8420	11095	11095					0.09475831517625011
EVRMRERELRE	11	Unmodified	_EVRMRERELRE_					0	0	0			REV__ENSG00000130254|ENST00000252542|SAFB2	REV__ENSG00000130254|ENST00000252542|SAFB2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.2935485839844	3	501.600058	1501.77834	-1.4142	-0.00070935	-1.4331	-0.00071886	-2.8473	-0.0014282	501.59916280121524	106.67	0.41596	104.79	104.54	104.96	-1.8785					10	7	2	0	0	0	0.026401	1	9714	9714		8.4073	0	1	9713.1	+		10265	18934	8412	8421	11096	11096					0.04752564820432781
EVRPLVIMTPK	11	Unmodified	_EVRPLVIMTPK_					0	0	0		tr|A0A553SMY3|A0A553SMY3_NIACI2-oxoglutaratedehydrogenaseE1componentOS=NialliacirculansOX=1397GN=odhAPE=3SV=1	tr|A0A553SMY3|A0A553SMY3_NIACI2-oxoglutaratedehydrogenaseE1componentOS=NialliacirculansOX=1397GN=odhAPE=3SV=1	tr|A0A553SMY3|A0A553SMY3_NIACI2-oxoglutaratedehydrogenaseE1componentOS=NialliacirculansOX=1397GN=odhAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8818969726562	2	641.881216	1281.74788	-1.4859	-0.00095374	3.5649	0.0022882	2.079	0.0013345	641.8831617488581	147.83	1.0513	146.39	145.92	146.98	-1.435					32	20	2	0	0	0	0.72485	1	14544	14544		17.468	2.6031	1	16561			10266	33884	8413	8422	11097	11097					0.11827438173349947
EVRPLVIMTPK	11	Unmodified	_EVRPLVIMTPK_					0	0	0		tr|A0A553SMY3|A0A553SMY3_NIACI2-oxoglutaratedehydrogenaseE1componentOS=NialliacirculansOX=1397GN=odhAPE=3SV=1	tr|A0A553SMY3|A0A553SMY3_NIACI2-oxoglutaratedehydrogenaseE1componentOS=NialliacirculansOX=1397GN=odhAPE=3SV=1	tr|A0A553SMY3|A0A553SMY3_NIACI2-oxoglutaratedehydrogenaseE1componentOS=NialliacirculansOX=1397GN=odhAPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	641.881216	1281.74788	-3.942	-0.0025303	5.8909	0.0037812	1.9488	0.0012509	641.8849586639753	147.36	0.85172	146.41	146.1	146.95	-0.9512	0.0075662	0.001235	NaN	17.468	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13589			10267	33884	8413	8422							0.11827438173349947
EVRREQSRSRS	11	Unmodified	_EVRREQSRSRS_					0	0	0			REV__ENSG00000116350|ENST00000373795|SRSF4	REV__ENSG00000116350|ENST00000373795|SRSF4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.93841552734375	3	463.915034	1388.72327	-1.3767	-0.00063869	-2.4432	-0.0011334	-3.82	-0.0017721	464.24881773012106	45.14	0.467	42.101	41.971	42.438	-3.0385					17	8	3	0	0	0	0.026024	1	2305	2305		14.779	0	1	23312	+		10268	18300	8414	8423	11098	11098					0.04445894344166845
EVRRVLRPG	9	Unmodified	_EVRRVLRPG_					0	0	0		ENSG00000170439|ENST00000394252|METTL7B	ENSG00000170439|ENST00000394252|METTL7B	ENSG00000170439|ENST00000394252|METTL7B	MULTI-SECPEP	OvCa9_classI_Rep2	2	540.7683715820312	2	541.333082	1080.65161	0.40488	0.00021917	-0.011421	-6.1826E-06	0.39346	0.00021299	541.3326412582066	41.911	0.83835	39.201	38.881	39.72	-2.7097					30	16	3	0	0	0	0.027462	1	2200	2200		44.117	14.947	1	52012			10269	7103	8415	8424	11099	11099					0.11451051448284488
EVRSEPNSL	9	Unmodified	_EVRSEPNSL_					0	0	0			REV__REP15|p.E150*|1|0.06|ENSG00000174236|chr12:27697009-27697010|-/T|frameshift_variant	REV__REP15|p.E150*|1|0.06|ENSG00000174236|chr12:27697009-27697010|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7589111328125	2	515.76182	1029.50909	-0.91978	-0.00047439	-2.2845	-0.0011782	-3.2042	-0.0016526	515.7604705609308	127.55	1.5787	126.12	125.79	127.37	-1.4357					77	29	4	0	0	0	0.38969	1	12199	12199		52.937	6.9645	1	263920	+		10270	21820	8416	8425	11100	11100					-0.004486258044153146
EVRTIYLLTL	10	Unmodified	_EVRTIYLLTL_					0	0	0			REV__ENSG00000099282|ENST00000373290|TSPAN15	REV__ENSG00000099282|ENST00000373290|TSPAN15	MULTI-MSMS	OvCa9_classI_Rep4_	4	407.57977294921875	3	407.579818	1219.71762	1.0344	0.00042159	-3.7079	-0.0015113	-2.6735	-0.0010897	407.5782791583038	58.499	2.3811	55.107	54.752	57.133	-3.392					132	47	5	0	0	0	0.59317	1	3871	3871		42.864	0	1	1731900	+		10271	17318	8417	8426	11101	11101					0.11655402779797441
EVRYGCLR	8	Unmodified	_EVRYGCLR_					0	0	0		ENSG00000122299|ENST00000355758|ZC3H7A;ENSG00000100403|ENST00000352645|ZC3H7B	ENSG00000122299|ENST00000355758|ZC3H7A	ENSG00000122299|ENST00000355758|ZC3H7A	MULTI-MSMS	OvCa99_classI_Rep5	1	498.2598571777344	2	498.258194	994.501834	0.30074	0.00014985	2.9385	0.0014641	3.2392	0.001614	498.2595530495074	114.77	0.65178	114.77	114.51	115.16	0					23	13	2	0	0	0	0.73205	1	13096	13096		35.618	1.4457	1	384130			10272	3525	8418	8427	11102	11102					0.004363631141586666
EVSALNQQCN	10	Unmodified	_EVSALNQQCN_					0	0	0		nc|ENSG00000085433|O94967-2|WDR47;ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47	nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.8274536132812	2	553.250763	1104.48697	2.8375	0.0015698	-0.40176	-0.00022228	2.4357	0.0013476	553.2506688644272	90.096	0.37666	90.096	89.933	90.31	0					14	8	2	0	0	0	0.026681	1	9674	9674		36.447	5.9431	1	320050			10273	1729	8419	8428	11103	11103					-0.06109173544496116
EVSCKSPQP	9	Unmodified	_EVSCKSPQP_					0	0	0		nc|ENSG00000148773|P46013-2|MKI67;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.K2670Nfs*23|1|0.03|ENSG00000148773|chr10:128103824-128103836|CTTTTCCTTAGGT/-|frameshift_variant;MKI67|p.R2903Efs*7|1|0.07|ENSG00000148773|chr10:128103134-128103135|-/T|frameshift_variant;MKI67|p.D2897Gfs*53|1|0.03|ENSG00000148773|chr10:128103129-128103150|TGTCTCCTGCTGCCAATTACAT/-|frameshift_variant	nc|ENSG00000148773|P46013-2|MKI67	nc|ENSG00000148773|P46013-2|MKI67	MULTI-SECPEP	OvCa9_classI_Rep4_	4	488.2701721191406	2	487.734217	973.453881	-0.80771	-0.00039395	0.49977	0.00024376	-0.30793	-0.00015019	487.73478355976164	71.355	0.92876	67.899	67.727	68.656	-3.4563					21	18	2	0	0	0	0.02744	1	5435	5435		44.377	0	1	21095			10274	5423	8420	8429	11104	11104					-0.03390755596547024
EVSDEPGPEP	10	Unmodified	_EVSDEPGPEP_					0	0	0			REV__ENST00000559814.5_1_15:29346087-29400775:+|nuORF	REV__ENST00000559814.5_1_15:29346087-29400775:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3649291992188	2	528.230019	1054.44548	0.61782	0.00032635	3.6727	0.00194	4.2905	0.0022664	528.2315680061745	158.94	0.44568	158.94	158.69	159.14	0					12	8	2	0	0	0	0.026802	1	18622	18622		34.173	0	1	31186	+		10275	16595	8421	8430	11105	11105					-0.07956031032176725
EVSEDAKQLI	10	Unmodified	_EVSEDAKQLI_					0	0	0		ENSG00000114738|ENST00000621469|MAPKAPK3	ENSG00000114738|ENST00000621469|MAPKAPK3	ENSG00000114738|ENST00000621469|MAPKAPK3	MULTI-SECPEP	OvCa9_classI_Rep3	3	566.7802734375	2	566.298236	1130.58192	1.0237	0.00057973	-0.13742	-7.7823E-05	0.8863	0.00050191	566.2971781173788	127.11	0.52301	126.04	125.65	126.17	-1.0715					10	9	2	0	0	0	0.026906	1	9932	9932		33.922	12.219	1	9412.1			10276	3036	8422	8431	11106	11106					0.021850831983556418
EVSEHNINV	9	Unmodified	_EVSEHNINV_					0	0	0		tr|A0A7D6VSE0|A0A7D6VSE0_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15845PE=4SV=1	tr|A0A7D6VSE0|A0A7D6VSE0_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15845PE=4SV=1	tr|A0A7D6VSE0|A0A7D6VSE0_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15845PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.7677612304688	2	520.753995	1039.49344	-0.036324	-1.8916E-05	-0.16112	-8.3905E-05	-0.19745	-0.00010282	520.7539540172971	74.152	0.68943	74.152	73.868	74.557	0					46	17	4	0	0	0	0.027448	1	7357	7357		44.117	8.4985	1	3689100			10277	35021	8423	8432	11107	11107					-0.024729123214683568
EVSHHEIK	8	Unmodified	_EVSHHEIK_					0	0	0			REV__ZNF804B|p.R745I|1|0.11|ENSG00000182348|chr7:89335216-89335216|G/T|missense_variant	REV__ZNF804B|p.R745I|1|0.11|ENSG00000182348|chr7:89335216-89335216|G/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.7304382324219	2	489.753798	977.493044	-0.84965	-0.00041612	0.86881	0.0004255	0.019156	9.3818E-06	489.7539551898304	45.57	0.52351	42.532	42.281	42.805	-3.0385					21	9	4	0	0	0	0.028476	1	2331	2331		44.117	0	1	29897	+		10278	32780	8424	8433	11108	11108					0.003397127493371954
EVSIGDIIVV	10	Unmodified	_EVSIGDIIVV_					0	0	0		tr|A0A7D6ZSI3|A0A7D6ZSI3_9CLOTCd(2+)-exportingATPaseOS=ClostridiumintestinaleOX=36845GN=cadAPE=3SV=1	tr|A0A7D6ZSI3|A0A7D6ZSI3_9CLOTCd(2+)-exportingATPaseOS=ClostridiumintestinaleOX=36845GN=cadAPE=3SV=1	tr|A0A7D6ZSI3|A0A7D6ZSI3_9CLOTCd(2+)-exportingATPaseOS=ClostridiumintestinaleOX=36845GN=cadAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	522.3019409179688	2	522.30279	1042.59103	1.2415	0.00064846	-1.7685	-0.00092368	-0.52694	-0.00027522	522.3016639909167	127.08	1.1375	126.85	126.54	127.68	-0.2359					63	22	4	0	0	0	0.50656	1	12450	12450		53.351	0	1	309860			10279	35738	8425	8434	11109	11109					0.0714347655466554
EVSIGLTKL	9	Unmodified	_EVSIGLTKL_					0	0	0			REV__ENSG00000164265|ENST00000296694|SCGB3A2	REV__ENSG00000164265|ENST00000296694|SCGB3A2	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.2468566894531	2	480.292225	958.569897	2.3797	0.0011429	-0.32361	-0.00015543	2.0561	0.00098751	480.29197288986114	97.096	0.59843	97.096	96.71	97.309	0					25	13	3	0	0	0	0.02741	1	10651	10651		60.972	9.7792	1	860120	+		10280	20963	8426	8435	11110	11110					0.08895511245793841
EVSIVGIMH	9	Unmodified	_EVSIVGIMH_					0	0	0			REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.30572509765625	2	492.762778	983.511002	0.72224	0.00035589	3.0059	0.0014812	3.7282	0.0018371	492.7637280022319	139.81	0.55951	139.81	139.56	140.12	0					17	11	2	0	0	0	0.027462	1	16314	16314		44.117	8.9161	1	27613	+		10281	17113	8427	8436	11111	11111					0.018587116798357783
EVSKKRYS	8	Unmodified	_EVSKKRYS_					0	0	0			REV__ZNF583|p.G330Afs*43|1|0.13|ENSG00000198440|chr19:56423646-56423647|-/CATTGGACAAGGAT|frameshift_variant	REV__ZNF583|p.G330Afs*43|1|0.13|ENSG00000198440|chr19:56423646-56423647|-/CATTGGACAAGGAT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	498.7771301269531	2	498.777274	995.539994	-0.2398	-0.00011961	-0.25864	-0.000129	-0.49844	-0.00024861	498.7771245203716	47.144	1.2216	47.144	46.762	47.984	0					63	27	5	0	0	0	0.57734	1	3390	3390		68.787	0	1	3754100	+		10282	32776	8428	8437	11112	11112					0.04204572300477594
EVSLRLIH	8	Unmodified	_EVSLRLIH_					0	0	0			REV__nc|ENSG00000103326|O75808-2|CAPN15	REV__nc|ENSG00000103326|O75808-2|CAPN15	MULTI-MSMS	OvCa99_classI_Rep5	1	483.7905578613281	2	483.790184	965.565815	-0.75426	-0.0003649	0.69221	0.00033488	-0.062053	-3.0021E-05	483.7903917073341	41.903	0.60516	41.903	41.681	42.286	0					32	13	3	0	0	0	0.67745	1	2647	2647		47.916	3.3845	1	799910	+		10283	17611	8429	8438	11113	11113					0.08165466542754984
EVSQDCNIR	9	Unmodified	_EVSQDCNIR_					0	0	0		tr|A0A7D6ZIQ8|A0A7D6ZIQ8_9CLOTGrpBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08030PE=4SV=1	tr|A0A7D6ZIQ8|A0A7D6ZIQ8_9CLOTGrpBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08030PE=4SV=1	tr|A0A7D6ZIQ8|A0A7D6ZIQ8_9CLOTGrpBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08030PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.302734375	2	532.24548	1062.47641	-0.64566	-0.00034365	3.028	0.0016117	2.3824	0.001268	532.2465758705401	122.58	0.34741	121.21	121.11	121.46	-1.3666					9	6	2	0	0	0	0.027462	1	11574	11574		23.042	8.1776	1	14475			10284	35624	8430	8439	11114	11114					-0.052331561989376496
EVSVWLRI	8	Unmodified	_EVSVWLRI_					0	0	0			REV__ENSG00000125826|ENST00000356286|RBCK1	REV__ENSG00000125826|ENST00000356286|RBCK1	MULTI-MSMS	OvCa9_classI_Rep2	2	501.2902526855469	2	501.292559	1000.57057	-0.80197	-0.00040202	-3.5119	-0.0017605	-4.3139	-0.0021625	501.2906816095173	135.63	4.8104	135.4	133.71	138.52	-0.22697					221	98	3	0	0	0	0.75426	1	13506	13506		18.324	1.6194	1	70595	+		10285	18749	8431	8440	11115	11115					0.07030350685522535
EVSYKSKVD	9	Unmodified	_EVSYKSKVD_					0	0	0		tr|A0A553SGI6|A0A553SGI6_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_10870PE=4SV=1	tr|A0A553SGI6|A0A553SGI6_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_10870PE=4SV=1	tr|A0A553SGI6|A0A553SGI6_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_10870PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.8603515625	2	527.774396	1053.53424	2.1988	0.0011605	0.77465	0.00040884	2.9735	0.0015693	527.7748288416434	94.984	1.2741	94.984	94.264	95.538	0					56	29	4	0	0	0	0.027425	1	10295	10295		60.118	17.722	1	1414200			10286	33161	8432	8441	11116	11116					0.00961428998152769
EVTEPRRWRR	10	Unmodified	_EVTEPRRWRR_					0	0	0		ENST00000473585.1_1_19:58258206-58260529:+|nuORF;ENST00000317178.9_1_19:58258206-58262166:+|nuORF	ENST00000473585.1_1_19:58258206-58260529:+|nuORF	ENST00000473585.1_1_19:58258206-58260529:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	461.2802734375	3	462.256731	1383.74836	-0.24183	-0.00011179	-0.5613	-0.00025947	-0.80313	-0.00037125	462.25648629511	68.635	0.68887	65.145	64.867	65.556	-3.4902					28	13	3	0	0	0	0.027253	1	5091	5091		10.104	0.8921	1	144740			10287	10352	8433	8442	11117	11117					0.07183993937383093
EVTEPRRWRR	10	Unmodified	_EVTEPRRWRR_					0	0	0		ENST00000473585.1_1_19:58258206-58260529:+|nuORF;ENST00000317178.9_1_19:58258206-58262166:+|nuORF	ENST00000473585.1_1_19:58258206-58260529:+|nuORF	ENST00000473585.1_1_19:58258206-58260529:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	462.256731	1383.74836	-0.92737	-0.00042868	-0.48786	-0.00022552	-1.4152	-0.0006542	462.25623243737004	67.685	2.1765	65.024	63.751	65.927	-2.661	-0.039816	0.00034917	NaN	14.694	79	43	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72171			10288	10352	8433	8442							0.07183993937383093
EVTEPRRWRR	10	Unmodified	_EVTEPRRWRR_					0	0	0		ENST00000473585.1_1_19:58258206-58260529:+|nuORF;ENST00000317178.9_1_19:58258206-58262166:+|nuORF	ENST00000473585.1_1_19:58258206-58260529:+|nuORF	ENST00000473585.1_1_19:58258206-58260529:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		3	462.256731	1383.74836	0.73488	0.0003397	-1.0957	-0.00050648	-0.36078	-0.00016677	462.25616111572475	67.91	1.1507	65.023	64.839	65.99	-2.8873	-0.041008	-0.0004937	NaN	14.694	43	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35589			10289	10352	8433	8442							0.07183993937383093
EVTEYYISGD	10	Unmodified	_EVTEYYISGD_					0	0	0		ENSG00000158615|ENST00000367188|PPP1R15B	ENSG00000158615|ENST00000367188|PPP1R15B	ENSG00000158615|ENST00000367188|PPP1R15B	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.7747192382812	2	588.258776	1174.503	1.8979	0.0011165	1.6195	0.00095269	3.5174	0.0020692	588.2595639569066	80.682	0.50575	80.682	80.487	80.993	0					26	11	3	0	0	0	0.026994	1	8324	8324		25.574	3.8883	1	907940			10290	5964	8434	8443	11118	11118					-0.07727188826629572
EVTEYYISGD	10	Unmodified	_EVTEYYISGD_					0	0	0		ENSG00000158615|ENST00000367188|PPP1R15B	ENSG00000158615|ENST00000367188|PPP1R15B	ENSG00000158615|ENST00000367188|PPP1R15B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	588.258776	1174.503	0.12749	7.4996E-05	0.95691	0.00056291	1.0844	0.0006379	588.258969371589	82.296	1.0759	80.647	80.334	81.41	-1.6485	-0.017328	-0.00046229	NaN	24.519	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32346			10291	5964	8434	8443							-0.07727188826629572
EVTLEFLK	8	Unmodified	_EVTLEFLK_					0	0	0			REV__ENST00000474494.1_1_2:97373418-97377633:-|nuORF	REV__ENST00000474494.1_1_2:97373418-97377633:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.7304382324219	2	489.778951	977.543348	-0.86753	-0.0004249	0.58257	0.00028533	-0.28496	-0.00013957	489.7788804555706	45.361	0.77992	42.322	41.867	42.647	-3.0385					20	14	2	0	0	0	0.028476	1	2331	2331		44.117	9.9443	1	28068	+		10292	18212	8435	8444	11119	11119					0.05367822354469354
EVTLRLSEI	9	Unmodified	_EVTLRLSEI_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54;nc|ENSG00000188596|Q96N23-2|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-MSMS	OvCa9_classI_Rep2	2	530.3086547851562	2	530.305864	1058.59717	-1.3309	-0.00070578	-1.6739	-0.00088765	-3.0048	-0.0015934	530.3048378215436	104.37	0.6456	103.8	103.42	104.07	-0.57639					32	12	4	0	0	0	0.14855	1	9687	9687		85.161	10.118	1	1811100			10293	8482	8436	8445	11120	11120					0.07021994786191499
EVTMTKES	8	Unmodified	_EVTMTKES_					0	0	0			REV__nc|ENSG00000131016|Q02952-3|AKAP12	REV__nc|ENSG00000131016|Q02952-3|AKAP12	MULTI-SECPEP	OvCa99_classI_Rep5	1	461.7419738769531	2	462.720775	923.426998	-0.78081	-0.0003613	-1.3097	-0.000606	-2.0905	-0.0009673	462.7204219761384	49.634	0.56983	49.634	49.33	49.899	0					19	12	2	0	0	0	0.028476	1	3728	3728		26.796	1.3459	1	214760	+		10294	18990	8437	8446	11121	11121					-0.037778642077455515
EVTRLRDLL	9	Unmodified	_EVTRLRDLL_					0	0	0		nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A;KIF1A|p.D374V|1|0.19|ENSG00000130294|chr2:240773173-240773173|T/A|missense_variant	nc|ENSG00000130294|Q12756|KIF1A	nc|ENSG00000130294|Q12756|KIF1A	MULTI-SECPEP	OvCa9_classI_Rep2	2	558.2410888671875	2	557.83258	1113.65061	1.614	0.00090037	2.2315	0.0012448	3.8456	0.0021452	557.8340025005486	129.38	0.6423	129.16	128.87	129.51	-0.22696					19	12	2	0	0	0	0.027462	1	12673	12673		45.972	3.108	1	16976			10295	3976	8438	8447	11122	11122					0.09832792288693781
EVTRYYLY	8	Unmodified	_EVTRYYLY_					0	0	0		ENSG00000141540|ENST00000269346|TTYH2	ENSG00000141540|ENST00000269346|TTYH2	ENSG00000141540|ENST00000269346|TTYH2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.8545532226562	2	553.779482	1105.54441	-0.10323	-5.7167E-05	-0.60228	-0.00033353	-0.70551	-0.0003907	553.7788786007972	104.91	0.96242	102.79	102.48	103.44	-2.1192					27	18	2	0	0	0	0.028476	1	9576	9576		44.117	0	1	37321			10296	4924	8439	8448	11123	11123					-0.004139632766282375
EVTVEMNAAPG	11	Unmodified	_EVTVEMNAAPG_					0	0	0		ENSG00000167916|ENST00000264651|KRT24;CON__Q2M2I5	ENSG00000167916|ENST00000264651|KRT24	ENSG00000167916|ENST00000264651|KRT24	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.81640625	2	559.263339	1116.51212	2.4394	0.0013642	1.2325	0.00068927	3.6718	0.0020535	559.2642304809183	134.15	0.2854	134.15	133.96	134.24	0					9	5	2	0	0	0	0.025257	1	15602	15602		52.937	8.8199	1	17737		+	10297	641	8440	8449	11124	11124					-0.04147118741957456
EVTVNDVSLQL	11	Unmodified	_EVTVNDVSLQL_					0	0	0			REV__nc|ENSG00000110076|Q9P2S2-2|NRXN2	REV__nc|ENSG00000110076|Q9P2S2-2|NRXN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	609.8019409179688	2	608.824618	1215.63468	2.4208	0.0014738	-0.58578	-0.00035664	1.835	0.0011172	608.8242503025826	110.58	0.44569	110.58	110.4	110.85	0					16	9	2	0	0	0	0.02539	1	12571	12571		42.864	2.8061	1	229440	+		10298	17968	8441	8450	11125	11125					0.035490412611579814
EVTVNDVSLQL	11	Unmodified	_EVTVNDVSLQL_					0	0	0			REV__nc|ENSG00000110076|Q9P2S2-2|NRXN2	REV__nc|ENSG00000110076|Q9P2S2-2|NRXN2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	608.824618	1215.63468	-0.23143	-0.0001409	-0.87664	-0.00053372	-1.1081	-0.00067462	608.8245382352575	111.05	0.93696	110.91	110.63	111.57	-0.13961	0.1733	0.0010523	NaN	42.864	29	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32188	+		10299	17968	8441	8450							0.035490412611579814
EVTVNDVSLQL	11	Unmodified	_EVTVNDVSLQL_					0	0	0			REV__nc|ENSG00000110076|Q9P2S2-2|NRXN2	REV__nc|ENSG00000110076|Q9P2S2-2|NRXN2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	608.824618	1215.63468	3.2325	0.001968	-4.3961	-0.0026765	-1.1636	-0.00070842	608.8223999607065	111.84	0.6908	110.73	110.5	111.19	-1.1038	-0.0031736	-0.0032332	NaN	42.864	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32973	+		10300	17968	8441	8450							0.035490412611579814
EVVEKDKPK	9	Unmodified	_EVVEKDKPK_					0	0	0			REV__ENSG00000188133|ENST00000342743|TMEM215	REV__ENSG00000188133|ENST00000342743|TMEM215	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3052978515625	2	536.305864	1070.59717	1.3999	0.0007508	1.1706	0.00062779	2.5705	0.0013786	536.3071085972814	111.73	0.73503	111.73	111.56	112.3	0					19	15	2	0	0	0	0.02744	1	12752	12752		44.377	0	1	106220	+		10301	22694	8442	8451	11126	11126					0.06469994786198185
EVVKDGNKT	9	Unmodified	_EVVKDGNKT_					0	0	0			REV__tr|A0A7D6VPK0|A0A7D6VPK0_9CLOTIg-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23315PE=3SV=1	REV__tr|A0A7D6VPK0|A0A7D6VPK0_9CLOTIg-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23315PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.7879333496094	2	495.266739	988.518924	-0.89447	-0.000443	1.2315	0.00060993	0.33706	0.00016694	495.26736336423323	54.029	1.4361	50.781	50.517	51.953	-3.2474					73	27	5	0	0	0	0.027433	1	3371	3371		54.776	5.3348	1	208940	+		10302	31253	8443	8452	11127	11127					0.024205622009503713
EVVKDGNKT	9	Unmodified	_EVVKDGNKT_					0	0	0			REV__tr|A0A7D6VPK0|A0A7D6VPK0_9CLOTIg-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23315PE=3SV=1	REV__tr|A0A7D6VPK0|A0A7D6VPK0_9CLOTIg-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23315PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	495.266739	988.518924	-0.90075	-0.00044611	1.3675	0.0006773	0.4668	0.00023119	495.26742762084075	53.839	0.89659	51.025	50.776	51.673	-2.8139	0.12201	0.00010828	NaN	54.776	44	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26247	+		10303	31253	8443	8452							0.024205622009503713
EVVKKTKA	8	Unmodified	_EVVKKTKA_					0	0	0			REV__ENSG00000198900|ENST00000361337|TOP1	REV__ENSG00000198900|ENST00000361337|TOP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.2490539550781	2	451.78711	901.559667	-0.32293	-0.0001459	0.33499	0.00015134	0.01206	5.4487E-06	451.78721013145116	44.945	0.67016	41.907	41.663	42.334	-3.0385					20	12	2	0	0	0	0.028476	1	2303	2303		26.693	4.9906	1	35234	+		10304	23089	8444	8453	11128	11128					0.10494948311225016
EVVKLLVSH	9	Unmodified	_EVVKLLVSH_					0	0	0		ENST00000498524.5_1_3:15727727-15838055:-|nuORF;nc|ENSG00000206560|O15084-2|ANKRD28;ANKRD28|p.C966Tfs*22|1|0.04|ENSG00000206560|chr3:15670537-15670538|-/ACAATAGTGTT|frameshift_variant;nc|ENSG00000206560|O15084|ANKRD28;ENSG00000206560|ENST00000683139|ANKRD28;nc|ENSG00000206560|O15084-1|ANKRD28;ENSG00000169018|ENST00000306917|FEM1B	ENST00000498524.5_1_3:15727727-15838055:-|nuORF;ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.312255859375	2	512.313492	1022.61243	-0.050105	-2.5669E-05	0.92685	0.00047484	0.87675	0.00044917	512.3134957498988	105.2	0.26534	105.2	105	105.27	0					8	5	2	0	0	0	0.027447	1	11808	11808		24.519	0	1	80906			10305	93;6966	8445	8454	11129	11129					0.10202906374047416
EVVLEKKVS	9	Unmodified	_EVVLEKKVS_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.P12974Lfs*4|1|0.05|ENSG00000155657|chr2:178631204-178631205|-/GTACA|frameshift_variant;TTN|p.E11597Rfs*5|1|0.5|ENSG00000155657|chr2:178651954-178651954|A/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.7571411132812	2	515.810782	1029.60701	1.7948	0.00092577	-0.59186	-0.00030529	1.2029	0.00062048	515.8102120564997	108.53	0.30371	108.53	108.41	108.71	0					9	6	2	0	0	0	0.027462	1	12278	12278		24.519	1.4767	1	99305			10306	5793;36288	8446	8455	11130	11130					0.09339182791563871
EVVLNSQVIT	10	Unmodified	_EVVLNSQVIT_					0	0	0		tr|A0A553SIL9|A0A553SIL9_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15100PE=4SV=1	tr|A0A553SIL9|A0A553SIL9_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15100PE=4SV=1	tr|A0A553SIL9|A0A553SIL9_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15100PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	550.3272094726562	2	551.311146	1100.60774	-0.75799	-0.00041789	0.22416	0.00012358	-0.53384	-0.00029431	551.3111900148634	84.594	1.698	83.048	82.64	84.338	-1.5462					81	33	4	0	0	0	0.02658	1	7419	7419		54.776	14.718	1	316340			10307	33397	8447	8456	11131	11131					0.061459774406330325
EVVLQWFTE	9	Unmodified	_EVVLQWFTE_					0	0	0		ENSG00000166825|ENST00000300060|ANPEP	ENSG00000166825|ENST00000300060|ANPEP	ENSG00000166825|ENST00000300060|ANPEP	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.818603515625	2	575.792589	1149.57063	-2.1185	-0.0012198	0.67817	0.00039049	-1.4404	-0.00082935	575.79502714259	92.907	1.3237	90.945	90.56	91.884	-1.9617					88	26	6	0	0	0	0.027418	1	5975	5975		68.787	0	1	122280			10308	6717	8448	8457	11132	11132					0.0018230589482755022
EVVLTIIR	8	Unmodified	_EVVLTIIR_					0	0	0		ENSG00000104321|ENST00000262209|TRPA1	ENSG00000104321|ENST00000262209|TRPA1	ENSG00000104321|ENST00000262209|TRPA1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.7740783691406	2	471.80276	941.590967	0.57255	0.00027013	0.21872	0.00010319	0.79127	0.00037332	471.80265735642513	58.4	1.053	55.008	54.752	55.805	-3.392					26	20	2	0	0	0	0.028476	1	3845	3845		26.693	0	1	54604			10309	2365	8449	8458	11133	11133					0.11783521345341796
EVVMASSFWEC	11	Unmodified	_EVVMASSFWEC_					0	0	0		ENSG00000225968|ENST00000424383|ELFN1	ENSG00000225968|ENST00000424383|ELFN1	ENSG00000225968|ENST00000424383|ELFN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	644.8681030273438	2	644.272849	1286.53115	1.1008	0.00070922	1.3057	0.00084123	2.4065	0.0015505	644.2738388368315	124.22	0.50146	124.22	123.97	124.47	0					14	10	2	0	0	0	0.02557	1	14344	14344		39.253	8.9351	1	231500			10310	9268	8450	8459	11134	11134					-0.10065905442502299
EVVPCRIL	8	Unmodified	_EVVPCRIL_					0	0	0		ENST00000452606.2_1_3:12880633-12880819:-|nuORF	ENST00000452606.2_1_3:12880633-12880819:-|nuORF	ENST00000452606.2_1_3:12880633-12880819:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	465.2861328125	2	464.767863	927.521173	0.49614	0.00023059	-2.7828	-0.0012933	-2.2866	-0.0010628	464.76600991108927	125.64	0.24767	125.4	125.21	125.45	-0.23589					7	4	2	0	0	0	0.028476	1	12244	12244		38.806	5.2906	1	9956.7			10311	12055	8451	8460	11135	11135					0.05451319405074173
EVVPCRIL	8	Unmodified	_EVVPCRIL_					0	0	0		ENST00000452606.2_1_3:12880633-12880819:-|nuORF	ENST00000452606.2_1_3:12880633-12880819:-|nuORF	ENST00000452606.2_1_3:12880633-12880819:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	464.767863	927.521173	1.7984	0.00083583	-2.4934	-0.0011588	-0.69499	-0.00032301	464.7659759346207	125.69	0.90169	125.69	125.42	126.32	0	0.04949	0.001	NaN	21.96	25	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80671			10312	12055	8451	8460							0.05451319405074173
EVVPPRCEVIK	11	Unmodified	_EVVPPRCEVIK_					0	0	0			REV__KMT2A|p.P2471Lfs*35|1|0.08|ENSG00000118058|chr11:118503312-118503312|C/-|frameshift_variant;REV__nc|ENSG00000118058|Q03164-2|KMT2A	REV__KMT2A|p.P2471Lfs*35|1|0.08|ENSG00000118058|chr11:118503312-118503312|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	634.8593139648438	2	634.855198	1267.69584	3.005	0.0019077	4.2428	0.0026936	7.2478	0.0046013	634.8578519189956	96.212	1.2662	96.212	95.913	97.18	0					87	29	5	0	0	0	0.6391	1	10566	10566		54.722	19.57	1	13132000	+		10313	28341;18378	8452	8461	11136	11136					0.07270274759571294
EVVPRRPE	8	Unmodified	_EVVPRRPE_					0	0	0			REV__ENSG00000196576|ENST00000359337|PLXNB2;REV__TUBGCP6-PLXNB2|1|fusion	REV__ENSG00000196576|ENST00000359337|PLXNB2	MULTI-MSMS	OvCa9_classI_Rep2	2	491.27642822265625	2	491.277441	980.540328	-0.28614	-0.00014057	0.14846	7.2936E-05	-0.13767	-6.7636E-05	491.2773086839078	48.84	1.1389	46.079	45.779	46.918	-2.7603					48	22	3	0	0	0	0.6962	1	3067	3067		44.117	3.5442	1	137360	+		10314	22843;32739	8453	8462	11137	11137					0.04927992020327565
EVVPVLLF	8	Unmodified	_EVVPVLLF_					0	0	0			REV__chr2:182748376-182751658|104|12.19|0.28|5.42|+|1|TE_info:L1PA3,L1PA3_dup1364,L1,LINE,donor,-,182745742,182748376|None,DNAJC10|42	REV__chr2:182748376-182751658|104|12.19|0.28|5.42|+|1|TE_info:L1PA3,L1PA3_dup1364,L1,LINE,donor,-,182745742,182748376|None,DNAJC10|42	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.74920654296875	2	458.281129	914.547705	-0.2653	-0.00012158	-4.121	-0.0018886	-4.3863	-0.0020101	458.2790537622372	70.466	0.35582	70.466	70.286	70.641	0					12	8	2	0	0	0	0.028476	1	6767	6767		14.664	0	1	439820	+		10315	15993	8454	8463	11138	11138					0.08701331568045134
EVVQAPRKG	9	Unmodified	_EVVQAPRKG_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;ENST00000560634.1_1_15:84858634-84860056:+|nuORF;ENST00000558229.1_15:82983798-82985220:-|nuORF	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OvCa9_classI_Rep2	2	492.2849426269531	2	492.285266	982.555979	-2.3423	-0.0011531	2.5437	0.0012522	0.2014	9.9145E-05	492.28641322443195	149.16	1.1047	148.94	148.52	149.62	-0.22696					49	21	3	0	0	0	0.56889	1	15106	15106		35.618	10.044	1	83456			10316	7388	8455	8464	11139	11139					0.06400278537375925
EVVQKQEAE	9	Unmodified	_EVVQKQEAE_					0	0	0		nc|ENSG00000186517|Q7Z6I6-3|ARHGAP30;ENSG00000186517|ENST00000368013|ARHGAP30	nc|ENSG00000186517|Q7Z6I6-3|ARHGAP30	nc|ENSG00000186517|Q7Z6I6-3|ARHGAP30	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.3052978515625	2	530.269478	1058.5244	0.48877	0.00025918	-1.0571	-0.00056053	-0.56829	-0.00030135	530.2687135950489	45.663	0.78033	45.663	45.289	46.069	0					29	17	3	0	0	0	0.027462	1	3132	3132		45.972	5.1941	1	352890			10317	8343	8456	8465	11140	11140					-0.0025175900723297673
EVVSLGPVL	9	Unmodified	_EVVSLGPVL_					0	0	0			REV__ENST00000528377.1_1_11:67375903-67377304:+|nuORF	REV__ENST00000528377.1_1_11:67375903-67377304:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	456.77252197265625	2	456.773668	911.532783	0.41062	0.00018756	-3.2995	-0.0015071	-2.8889	-0.0013196	456.7720882264302	137.84	1.2382	137.61	136.84	138.08	-0.22696					44	25	2	0	0	0	0.59983	1	13680	13680		31.955	6.5047	1	20083	+		10318	27168	8457	8466	11141	11141					0.0734783970007129
EVVVLLLELNP	11	Unmodified	_EVVVLLLELNP_					0	0	0		ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MULTI-MSMS	OvCa9_classI_Rep2	2	619.3721313476562	2	619.373746	1236.73294	-5.5105	-0.0034131	2.4904	0.0015425	-3.0201	-0.0018706	619.3751482919054	158.89	0.97121	158.66	158.38	159.35	-0.22696					37	18	3	0	0	0	0.72516	1	16157	16157		13.454	0.64233	1	60403			10319	1503	8458	8467	11142	11142					0.1240426957699583
EVVVLTLKS	9	Unmodified	_EVVVLTLKS_					0	0	0			REV__ENSG00000095203|ENST00000374566|EPB41L4B	REV__ENSG00000095203|ENST00000374566|EPB41L4B	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.768310546875	2	494.307875	986.601197	1.6728	0.00082689	-0.11377	-5.6236E-05	1.5591	0.00077066	494.3076318362051	113.78	0.3424	113.78	113.53	113.88	0					13	7	2	0	0	0	0.027462	1	12977	12977		37.812	8.662	1	82679	+		10320	17283	8459	8468	11143	11143					0.10736084279903935
EVVVRATY	8	Unmodified	_EVVVRATY_					0	0	0		ENSG00000120318|ENST00000239440|ARAP3;ARAP3|p.M1385Dfs*25|1|0.05|ENSG00000120318|chr5:141654432-141654433|-/C|frameshift_variant;nc|ENSG00000120318|Q8WWN8-2|ARAP3	ENSG00000120318|ENST00000239440|ARAP3	ENSG00000120318|ENST00000239440|ARAP3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	467.7894287109375	2	468.761092	935.507631	-0.53074	-0.00024879	0.78752	0.00036916	0.25678	0.00012037	468.76102211024266	45.87	0.6805	42.797	42.613	43.294	-3.0724					22	12	2	0	0	0	0.028476	1	2357	2357		17.365	0	1	35813			10321	103	8460	8469	11144	11144					0.037297848974731096
EVVWIEEPE	9	Unmodified	_EVVWIEEPE_					0	0	0			REV__ENSG00000185040|ENST00000633306|SPDYE16	REV__ENSG00000185040|ENST00000633306|SPDYE16	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.3097534179688	2	565.274229	1128.53391	2.6421	0.0014935	3.3637	0.0019014	6.0058	0.0033949	565.2775201207556	96.603	0.37668	96.603	96.418	96.795	0					12	8	2	0	0	0	0.027462	1	10594	10594		38.806	9.6566	1	500190	+		10322	22474	8461	8470	11145	11145					-0.025219907217206128
EVWELNPP	8	Unmodified	_EVWELNPP_					0	0	0		nc|ENSG00000175497|Q8N608-4|DPP10;nc|ENSG00000175497|Q8N608-2|DPP10;ENSG00000175497|ENST00000410059|DPP10;nc|ENSG00000175497|Q8N608-3|DPP10	nc|ENSG00000175497|Q8N608-4|DPP10	nc|ENSG00000175497|Q8N608-4|DPP10	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.81732177734375	2	492.245275	982.475997	-1.0348	-0.00050939	-2.3224	-0.0011432	-3.3572	-0.0016526	492.24403744027006	62.329	1.2113	59.57	58.935	60.146	-2.7593					32	23	2	0	0	0	0.028476	1	4618	4618		53.351	0	1	46552			10323	7549	8462	8471	11146	11146					-0.015942078564762596
EVWNIMTEI	9	Unmodified	_EVWNIMTEI_					0	0	0			REV__tr|A0A7D6VUK2|A0A7D6VUK2_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07595PE=4SV=1	REV__tr|A0A7D6VUK2|A0A7D6VUK2_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07595PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.7769775390625	2	567.778625	1133.5427	-0.86751	-0.00049256	-2.2915	-0.001301	-3.159	-0.0017936	567.7771994508223	121.62	2.1249	121.42	121.15	123.27	-0.19719					95	42	4	0	0	0	0.37135	1	11748	11748		54.776	1.4249	1	400470	+		10324	31686	8463	8472	11147	11147					-0.01873340356883091
EVWQKALN	8	Unmodified	_EVWQKALN_					0	0	0		nc|ENSG00000090612|Q14587-4|ZNF268	nc|ENSG00000090612|Q14587-4|ZNF268	nc|ENSG00000090612|Q14587-4|ZNF268	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.7572326660156	2	494.266542	986.51853	-0.45433	-0.00022456	1.1775	0.000582	0.72317	0.00035744	494.26625320003825	49.059	0.35671	49.059	48.762	49.119	0					15	7	3	0	0	0	0.028476	1	3616	3616		37.159	0	1	109840			10325	14916	8464	8473	11148	11148					0.02473187271743882
EVWRLVDP	8	Unmodified	_EVWRLVDP_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.8121032714844	2	507.274367	1012.53418	-0.34847	-0.00017677	1.1943	0.00060583	0.84582	0.00042907	507.77698599716643	102.62	0.57935	100.42	100.04	100.62	-2.1994					15	10	2	0	0	0	0.028476	1	9234	9234		21.96	0	1	17141	+		10326	23506	8465	8474	11149	11149					0.028414737888056152
EVWRLVDP	8	Unmodified	_EVWRLVDP_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MATCH	OvCa9_classI_Rep2	2		2	507.274367	1012.53418	-1.3589	-0.00068932	2.0251	0.0010273	0.66626	0.00033798	507.7774459480843	101	0.59509	100.24	99.973	100.57	-0.76401	-0.0817	-0.00051513	NaN	15.642	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30797	+		10327	23506	8465	8474							0.028414737888056152
EVWRLVDP	8	Unmodified	_EVWRLVDP_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MATCH	OvCa9_classI_Rep3	3		2	507.274367	1012.53418	-1.2998	-0.00065934	3.1041	0.0015746	1.8043	0.00091528	507.77766843927606	101.82	0.52632	100.3	100.06	100.58	-1.5211	-0.017329	0.00057953	NaN	15.642	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21072	+		10328	23506	8465	8474							0.028414737888056152
EVWSHPMDF	9	Unmodified	_EVWSHPMDF_					0	0	0			REV__nc|ENSG00000159625|Q8IY82-2|DRC7	REV__nc|ENSG00000159625|Q8IY82-2|DRC7	MULTI-SECPEP	OvCa9_classI_Rep2	2	574.3085327148438	2	574.247492	1146.48043	-0.044296	-2.5437E-05	-4.3069	-0.0024732	-4.3512	-0.0024987	574.2451056565448	126.75	0.19798	126.52	126.34	126.54	-0.2359					5	3	2	0	0	0	0.027462	1	12369	12369		30.504	12.242	1	6622.6	+		10329	20621	8466	8475	11150	11150					-0.08695066705217869
EVYDRFLYRRY	11	Unmodified	_EVYDRFLYRRY_					0	0	0			REV__ENST00000465217.1_1_3:49004698-49008138:+|nuORF	REV__ENST00000465217.1_1_3:49004698-49008138:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	527.7646484375	3	527.272047	1578.79431	-1.812	-0.0009554	-0.70389	-0.00037114	-2.5159	-0.0013265	527.2716535542111	92.422	0.5491	90.398	90.225	90.774	-2.0241					20	11	2	0	0	0	0.026324	1	5852	5852		11.932	0	1	111000	+		10330	22010	8467	8476	11151	11151					0.02806594328990286
EVYDRFLYRRY	11	Unmodified	_EVYDRFLYRRY_					0	0	0			REV__ENST00000465217.1_1_3:49004698-49008138:+|nuORF	REV__ENST00000465217.1_1_3:49004698-49008138:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	527.272047	1578.79431	0.7	0.00036909	0.18611	9.813E-05	0.88611	0.00046722	527.272626361993	91.529	0.84283	90.293	90.061	90.904	-1.2355	-0.052432	0.00080895	NaN	11.932	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58513	+		10331	22010	8467	8476							0.02806594328990286
EVYEDTPV	8	Unmodified	_EVYEDTPV_					0	0	0		ENSG00000154162|ENST00000382254|CDH12;nc|ENSG00000154162|P55289-2|CDH12;ENST00000521384.5_1_5:21751848-21889748:-|nuORF	ENSG00000154162|ENST00000382254|CDH12	ENSG00000154162|ENST00000382254|CDH12	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.23956298828125	2	476.218923	950.423293	1.5293	0.00072829	2.2751	0.0010834	3.8044	0.0018117	476.2201258472116	84.86	0.91644	82.213	81.838	82.755	-2.6463					21	18	2	0	0	0	0.028476	1	7161	7161		33.516	0	1	25094			10332	5716	8468	8477	11152	11152					-0.05390210709947496
EVYFRFEN	8	Unmodified	_EVYFRFEN_					0	0	0		ENSG00000243811|ENST00000216099|APOBEC3D	ENSG00000243811|ENST00000216099|APOBEC3D	ENSG00000243811|ENST00000216099|APOBEC3D	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.7464599609375	2	552.261456	1102.50836	0.27673	0.00015283	-2.1241	-0.0011731	-1.8474	-0.0010202	552.2602648819892	123.12	0.94237	121.76	121.31	122.25	-1.3666					26	18	2	0	0	0	0.028476	1	11590	11590		58.782	18.209	1	23880			10333	9385	8469	8478	11153	11153					-0.038794204534724486
EVYFRFEN	8	Unmodified	_EVYFRFEN_					0	0	0		ENSG00000243811|ENST00000216099|APOBEC3D	ENSG00000243811|ENST00000216099|APOBEC3D	ENSG00000243811|ENST00000216099|APOBEC3D	MULTI-MATCH	OvCa9_classI_Rep2	2		2	552.261456	1102.50836	0.25472	0.00014067	-1.953	-0.0010785	-1.6982	-0.00093787	552.2602641405414	122.11	0.74223	121.89	121.57	122.31	-0.21803	0.1106	0.00020153	NaN	58.782	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20023			10334	9385	8469	8478							-0.038794204534724486
EVYFRFEN	8	Unmodified	_EVYFRFEN_					0	0	0		ENSG00000243811|ENST00000216099|APOBEC3D	ENSG00000243811|ENST00000216099|APOBEC3D	ENSG00000243811|ENST00000216099|APOBEC3D	MULTI-MATCH	OvCa9_classI_Rep3	3		2	552.261456	1102.50836	0.89567	0.00049464	-2.4511	-0.0013536	-1.5554	-0.000859	552.2598858332195	122.73	0.78759	121.7	121.27	122.06	-1.0286	-0.0836	-0.00034868	NaN	58.782	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32410			10335	9385	8469	8478							-0.038794204534724486
EVYGVHFEL	9	Unmodified	_EVYGVHFEL_					0	0	0		ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.2482299804688	2	546.771657	1091.52876	-0.38499	-0.0002105	0.83065	0.00045418	0.44566	0.00024367	546.7722399592362	122.02	0.72034	120.67	120.36	121.08	-1.3479					23	13	2	0	0	0	0.027448	1	11526	11526		44.117	14.275	1	20858			10336	3002	8470	8479	11154	11154					-0.013342497936719155
EVYGVHFEL	9	Unmodified	_EVYGVHFEL_					0	0	0		ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	MULTI-MATCH	OvCa99_classI_Rep5	1		2	546.771657	1091.52876	2.0556	0.001124	0.71854	0.00039287	2.7742	0.0015168	546.7718646279326	120.5	0.37151	120.5	120.32	120.7	0	-0.13718	0.00057838	NaN	44.117	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	488020			10337	3002	8470	8479							-0.013342497936719155
EVYHTTVLK	9	Unmodified	_EVYHTTVLK_					0	0	0		ENST00000396185.7_1_3:41241009-41266025:+|nuORF;ENST00000453024.5_1_3:41241021-41265725:+|nuORF	ENST00000396185.7_1_3:41241009-41266025:+|nuORF	ENST00000396185.7_1_3:41241009-41266025:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.30029296875	2	545.300581	1088.58661	-1.4197	-0.00077417	-0.27776	-0.00015146	-1.6975	-0.00092563	545.3003839810249	54.987	1.0719	51.74	51.491	52.563	-3.2474					63	20	4	0	0	0	0.27001	1	3442	3442		66.429	11.653	1	324020			10338	11312	8471	8480	11155	11155					0.04586012131721873
EVYHTTVLK	9	Unmodified	_EVYHTTVLK_					0	0	0		ENST00000396185.7_1_3:41241009-41266025:+|nuORF;ENST00000453024.5_1_3:41241021-41265725:+|nuORF	ENST00000396185.7_1_3:41241009-41266025:+|nuORF	ENST00000396185.7_1_3:41241009-41266025:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	545.300581	1088.58661	-1.2522	-0.00068282	-0.53836	-0.00029357	-1.7905	-0.00097639	545.3003027580247	54.726	0.84918	51.912	51.673	52.522	-2.8139	0.086088	-0.00017613	NaN	66.429	45	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65751			10339	11312	8471	8480							0.04586012131721873
EVYQRWNIVQ	10	Unmodified	_EVYQRWNIVQ_					0	0	0			REV__tr|A0A553SP77|A0A553SP77_NIACIRNA-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_25885PE=4SV=1	REV__tr|A0A553SP77|A0A553SP77_NIACIRNA-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_25885PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	445.73004150390625	3	445.566571	1333.67788	0.63716	0.0002839	1.2522	0.00055795	1.8894	0.00084185	445.5672812041347	43.02	0.51373	43.02	42.839	43.353	0					18	11	2	0	0	0	0.027142	1	2798	2798		15.333	0.63944	1	115610	+		10340	30507	8472	8481	11156	11156					0.024392758290787242
EVYRILLV	8	Unmodified	_EVYRILLV_					0	0	0			REV__ENSG00000113569|ENST00000231498|NUP155	REV__ENSG00000113569|ENST00000231498|NUP155	MULTI-SECPEP	OvCa9_classI_Rep3	3	502.3000183105469	2	502.810585	1003.60662	-0.83031	-0.00041749	-1.654	-0.00083163	-2.4843	-0.0012491	502.8094357329019	115.65	1.2336	114.61	114.35	115.59	-1.0414					57	24	4	0	0	0	0.028476	1	8586	8586		44.117	8.4985	1	220790	+		10341	18157	8473	8482	11157	11157					0.10495807862378115
EVYTRVVRRTL	11	Unmodified	_EVYTRVVRRTL_					0	0	0		ENST00000477618.1_1_9:74817496-74842957:+|nuORF;nc|ENSG00000119125|Q9Y2T3-2|GDA;ENSG00000119125|ENST00000358399|GDA;nc|ENSG00000119125|Q9Y2T3-3|GDA	ENST00000477618.1_1_9:74817496-74842957:+|nuORF	ENST00000477618.1_1_9:74817496-74842957:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	465.2694091796875	3	464.60877	1390.80448	-0.49354	-0.0002293	1.8152	0.00084334	1.3216	0.00061403	464.60933419056914	46.636	1.0905	43.926	43.399	44.489	-2.7097					23	21	2	0	0	0	0.026383	1	2772	2772		8.7993	0	1	17327			10342	3342	8474	8483	11158	11158					0.12471202054211972
EVYYRALVI	9	Unmodified	_EVYYRALVI_					0	0	0		tr|A0A7D6VXF9|A0A7D6VXF9_9CLOTClassIIaldolase/adducinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08430PE=4SV=1	tr|A0A7D6VXF9|A0A7D6VXF9_9CLOTClassIIaldolase/adducinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08430PE=4SV=1	tr|A0A7D6VXF9|A0A7D6VXF9_9CLOTClassIIaldolase/adducinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08430PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.8058471679688	2	563.318774	1124.623	0.72849	0.00041037	0.98267	0.00055356	1.7112	0.00096393	563.3184096817317	73.868	0.61613	73.868	73.56	74.176	0					49	15	6	0	0	0	0.027462	1	7286	7286		25.45	7.1258	1	1522600			10343	35279	8475	8484	11159	11159					0.0656688902845417
EWCSEEEEYHG	11	Unmodified	_EWCSEEEEYHG_					0	0	0			REV__ENSG00000131013|ENST00000253329|PPIL4	REV__ENSG00000131013|ENST00000253329|PPIL4	MULTI-SECPEP	OvCa99_classI_Rep5	1	466.5392150878906	3	466.503197	1396.48776	-1.305	-0.00060881	-0.95847	-0.00044713	-2.2635	-0.0010559	466.8374209651535	43.867	0.17276	43.867	43.78	43.952	0					6	3	2	0	0	0	0.026277	1	2926	2926		23.378	12.281	1	66737	+		10344	18988	8476	8485	11160	11160					-0.19462423686104557
EWDKREILER	10	Unmodified	_EWDKREILER_					0	0	0		ENST00000577800.1_1_18:66513601-66564710:+|nuORF;ENST00000577772.5_1_18:66504000-66564823:+|nuORF;nc|ENSG00000150636|Q68D86-2|CCDC102B;ENSG00000150636|ENST00000360242|CCDC102B	ENST00000577800.1_1_18:66513601-66564710:+|nuORF	ENST00000577800.1_1_18:66513601-66564710:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	458.5760192871094	3	458.577247	1372.70991	-0.37658	-0.00017269	-2.2813	-0.0010461	-2.6578	-0.0012188	458.5761939812645	24.411	0.50059	24.411	24.237	24.738	0					19	9	3	0	0	0	0.66944	1	448	448		33.922	3.3528	1	141920			10345	5513	8477	8486	11161	11161					0.03846643512224546
EWERQKRREM	10	Unmodified	_EWERQKRREM_					0	0	0		ENST00000598846.1_1_1:1636463-1654047:-|nuORF;nc|ENSG00000008128|Q9UQ88-9|CDK11A;nc|ENSG00000248333|P21127-6|CDK11B;nc|ENSG00000248333|P21127-9|CDK11B;nc|ENSG00000008128|Q9UQ88-4|CDK11A;nc|ENSG00000248333|P21127-8|CDK11B;nc|ENSG00000008128|Q9UQ88-3|CDK11A;ENSG00000008128|ENST00000404249|CDK11A;nc|ENSG00000248333|P21127-3|CDK11B;ENSG00000248333|ENST00000341832|CDK11B;nc|ENSG00000008128|Q9UQ88|CDK11A;nc|ENSG00000248333|P21127|CDK11B	ENST00000598846.1_1_1:1636463-1654047:-|nuORF	ENST00000598846.1_1_1:1636463-1654047:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.6051330566406	3	483.245615	1446.71502	2.0215	0.0009769	-3.429	-0.001657	-1.4075	-0.00068015	483.24394133761785	85.362	0.49734	85.362	85.252	85.75	0					17	11	2	0	0	0	0.027281	1	8950	8950		19.263	5.7547	1	215630			10346	913	8478	8487	11162	11162					0.009526241031835525
EWIALKVSLCL	11	Unmodified	_EWIALKVSLCL_					0	0	0			REV__nc|ENSG00000155906|Q9NWS8-2|RMND1	REV__nc|ENSG00000155906|Q9NWS8-2|RMND1	MULTI-SECPEP	OvCa9_classI_Rep3	3	426.2707824707031	3	425.57742	1273.71043	1.3223	0.00056275	1.4617	0.00062206	2.784	0.0011848	425.57806053529356	68.773	0.55042	65.958	65.661	66.212	-2.8143					16	10	2	0	0	0	0.026189	1	2978	2978		20.03	6.5225	1	16886	+		10347	20449	8479	8488	11163	11163					0.08452346907733954
EWIPLAWKW	9	Unmodified	_EWIPLAWKW_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2;GTF3C2|p.A345Dfs*19|1|0.13|ENSG00000115207|chr2:27337337-27337338|-/T|frameshift_variant;nc|ENSG00000115207|Q8WUA4-2|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MSMS	OvCa99_classI_Rep5	1	614.8314208984375	2	614.829309	1227.64407	1.011	0.00062157	-0.14375	-8.8383E-05	0.86722	0.00053319	614.8291282608154	150.77	1.8206	150.77	150.34	152.16	0					104	36	5	0	0	0	0.18193	1	17659	17659		79.451	11.957	1	1009500			10348	3068	8480	8489	11164	11164					0.03934899127989411
EWIWLRKLSR	10	Unmodified	_EWIWLRKLSR_					0	0	0			REV__ENST00000263377.6_1_19:15379807-15383627:-|nuORF	REV__ENST00000263377.6_1_19:15379807-15383627:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.9381408691406	3	462.93834	1385.79319	-1.4875	-0.00068863	-2.2476	-0.0010405	-3.7352	-0.0017291	462.9373949501134	44.694	4.8335	41.655	41.207	46.04	-3.0385					274	93	6	0	0	0	0.64812	1	2269	2269		36.318	0.82199	1	4600900	+		10349	23999	8481	8490	11165	11165					0.11572424750738719
EWLCHLLAQV	10	Unmodified	_EWLCHLLAQV_					0	0	0			REV__nc|ENSG00000067182|P19438-4|TNFRSF1A	REV__nc|ENSG00000067182|P19438-4|TNFRSF1A	MULTI-SECPEP	OvCa9_classI_Rep2	2	606.8159790039062	2	606.315709	1210.61686	-0.3727	-0.00022598	-1.7891	-0.0010847	-2.1618	-0.0013107	606.3147224683025	93.164	5.1441	91.996	90.814	95.958	-1.168					160	101	2	0	0	0	0.026802	1	8628	8628		34.173	0	1	215260	+		10350	27275	8482	8491	11166	11166					0.019980475252623364
EWMKSEEL	8	Unmodified	_EWMKSEEL_					0	0	0		ENST00000582168.5_1_17:72769619-72771837:-|nuORF;ENST00000582993.5_1_17:72769619-72771837:-|nuORF;ENST00000582118.1_1_17:72769619-72771837:-|nuORF;ENST00000582359.5_1_17:72768918-72770027:-|nuORF;ENST00000583834.5_1_17:72768345-72771837:-|nuORF;ENST00000577428.5_1_17:72768529-72772472:-|nuORF;ENST00000585240.5_1_17:72768620-72771837:-|nuORF;ENST00000583689.5_1_17:72768918-72771837:-|nuORF;ENST00000578798.5_1_17:72768345-72772472:-|nuORF;nc|ENSG00000109065|Q9BTE0-2|NAT9;ENSG00000109065|ENST00000357814|NAT9	ENST00000582168.5_1_17:72769619-72771837:-|nuORF	ENST00000582168.5_1_17:72769619-72771837:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.802490234375	2	526.241875	1050.4692	-1.4245	-0.00074965	-1.8293	-0.00096265	-3.2538	-0.0017123	526.7426631239157	81.594	0.63298	78.884	78.543	79.176	-2.7106					18	12	2	0	0	0	0.028476	1	6689	6689		53.351	19.179	1	20378			10351	2694	8483	8492	11167	11167					-0.054018887993379394
EWNKGCLVL	9	Unmodified	_EWNKGCLVL_					0	0	0			REV__ENSG00000184544|ENST00000571134|DHRS7C	REV__ENSG00000184544|ENST00000571134|DHRS7C	MULTI-MSMS	OvCa9_classI_Rep2	2	531.2772827148438	2	531.276052	1060.53755	-2.2319	-0.0011857	3.8803	0.0020615	1.6485	0.0008758	531.277969370088	85.666	2.2081	84.175	82.801	85.009	-1.4906					97	43	3	0	0	0	0.42676	1	7421	7421		49.442	1.7842	1	628520	+		10352	22436	8484	8493	11168	11168					0.00970400571168284
EWPKHWPTF	9	Unmodified	_EWPKHWPTF_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61720980-61752425:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OvCa99_classI_Rep5	1	614.8038940429688	2	614.300916	1226.58728	0.74173	0.00045564	2.0909	0.0012844	2.8326	0.0017401	614.3018147658292	101.97	0.98169	101.97	101.48	102.47	0					59	22	4	0	0	0	0.31747	1	11342	11342		60.972	13.012	1	1011600			10353	1685	8485	8494	11169	11169					-0.01695148428552784
EWTVMDVVE	9	Unmodified	_EWTVMDVVE_					0	0	0		ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000141858|Q6SPF0|SAMD1	ENSG00000141858|ENST00000533683|SAMD1	ENSG00000141858|ENST00000533683|SAMD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.3145141601562	2	554.254982	1106.49541	0.11718	6.4948E-05	4.4501	0.0024665	4.5673	0.0025314	554.2572232651123	114.42	0.27057	114.42	114.29	114.56	0					9	5	2	0	0	0	0.027462	1	13058	13058		30.504	0	1	52943			10354	4942	8486	8495	11170	11170					-0.053576196278982025
EWVDVINN	8	Unmodified	_EWVDVINN_					0	0	0			REV__nc|ENSG00000111802|O95551-3|TDP2	REV__nc|ENSG00000111802|O95551-3|TDP2	MULTI-SECPEP	OvCa9_classI_Rep3	3	494.295654296875	2	494.740357	987.46616	-1.1401	-0.00056408	-3.1937	-0.0015801	-4.3339	-0.0021442	494.7386818865417	91.557	0.86195	89.533	89.13	89.992	-2.0241					23	16	2	0	0	0	0.028476	1	5740	5740		45.952	0	1	34247	+		10355	18061	8487	8496	11171	11171					-0.028073958618506367
EWVNQPLI	8	Unmodified	_EWVNQPLI_					0	0	0			REV__ENSG00000136878|ENST00000372429|USP20	REV__ENSG00000136878|ENST00000372429|USP20	MULTI-MSMS	OvCa9_classI_Rep2	2	499.7685546875	2	499.768917	997.523281	-1.208	-0.00060371	0.5847	0.00029221	-0.62328	-0.00031149	499.7689113094421	103.18	0.93729	102.5	102.18	103.12	-0.68459					43	18	3	0	0	0	0.67745	1	9528	9528		47.916	5.4411	1	278080	+		10356	19418	8488	8497	11172	11172					0.024420714145321654
EYAFPNVML	9	Unmodified	_EYAFPNVML_					0	0	0			REV__nc|ENSG00000115761|Q9BSC4-2|NOL10	REV__nc|ENSG00000115761|Q9BSC4-2|NOL10	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.2674560546875	2	542.26261	1082.51067	-0.9181	-0.00049785	2.4531	0.0013302	1.535	0.00083239	542.2640485171918	77.374	0.92118	74.558	74.293	75.214	-2.8165					47	18	4	0	0	0	0.38529	1	6202	6202		53.351	2.016	1	327580	+		10357	18267	8489	8498	11173	11173					-0.02728708040035599
EYAFPNVML	9	Unmodified	_EYAFPNVML_					0	0	0			REV__nc|ENSG00000115761|Q9BSC4-2|NOL10	REV__nc|ENSG00000115761|Q9BSC4-2|NOL10	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.26261	1082.51067	-1.1709	-0.00063491	2.5213	0.0013672	1.3504	0.00073229	542.263624127188	76.427	1.2041	74.573	73.991	75.195	-1.854	-0.055561	-0.00013139	NaN	53.351	55	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74640	+		10358	18267	8489	8498							-0.02728708040035599
EYAFPNVML	9	Unmodified	_EYAFPNVML_					0	0	0			REV__nc|ENSG00000115761|Q9BSC4-2|NOL10	REV__nc|ENSG00000115761|Q9BSC4-2|NOL10	MULTI-MATCH	OvCa9_classI_Rep3	3		2	542.26261	1082.51067	-0.61146	-0.00033157	4.9893	0.0027055	4.3778	0.0023739	542.7661352752475	77.126	0.36584	74.754	74.558	74.924	-2.3715	0.12595	0.0025452	NaN	53.351	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11076	+		10359	18267	8489	8498							-0.02728708040035599
EYAFPNVML	9	Unmodified	_EYAFPNVML_					0	0	0			REV__nc|ENSG00000115761|Q9BSC4-2|NOL10	REV__nc|ENSG00000115761|Q9BSC4-2|NOL10	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	542.26261	1082.51067	-0.9181	-0.00049785	2.4531	0.0013302	1.535	0.00083239	542.2640485171918	77.374	0.92118	74.558	74.293	75.214	-2.8165	-0.070392	-0.00020528	NaN	53.351	47	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327580	+		10360	18267	8489	8498							-0.02728708040035599
EYAFSIEKF	9	Unmodified	_EYAFSIEKF_					0	0	0			REV__ENSG00000069345|ENST00000317089|DNAJA2	REV__ENSG00000069345|ENST00000317089|DNAJA2	MULTI-MSMS	OvCa99_classI_Rep5	1	567.2805786132812	2	567.279315	1132.54408	2.2638	0.0012842	-1.1818	-0.0006704	1.082	0.0006138	567.2787878651918	108.24	5.252	108.24	107.31	112.57	0					376	118	6	0	0	0	0.24951	1	12443	12443		68.787	3.3214	1	126230000	+		10361	16867	8490	8499	11174	11174					-0.016893829964601537
EYAKIEETM	9	Unmodified	_EYAKIEETM_					0	0	0		nc|ENSG00000081803|Q86UW7-3|CADPS2;nc|ENSG00000081803|Q86UW7-2|CADPS2;ENSG00000081803|ENST00000449022|CADPS2	nc|ENSG00000081803|Q86UW7-3|CADPS2	nc|ENSG00000081803|Q86UW7-3|CADPS2	MULTI-MSMS	OvCa99_classI_Rep5	1	557.2599487304688	2	557.260265	1112.50598	0.33818	0.00018845	-0.1744	-9.7188E-05	0.16378	9.1266E-05	557.2600857664821	70.622	1.1382	70.622	70.369	71.507	0					65	28	3	0	0	0	0.064985	2	6774	6774;6804		110.12	27.879	1	6893000			10362	1666	8491	8500	11175;11176	11175					-0.04577636973453991
EYAKIHDLL	9	Unmodified	_EYAKIHDLL_					0	0	0		ENSG00000171467|ENST00000361428|ZNF318;nc|ENSG00000171467|Q5VUA4-2|ZNF318;ZNF318|p.E1199Dfs*2|1|0.03|ENSG00000171467|chr6:43340401-43340401|C/-|frameshift_variant	ENSG00000171467|ENST00000361428|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	MULTI-MSMS	OvCa99_classI_Rep5	1	551.3020629882812	2	551.300581	1100.58661	1.6361	0.000902	0.64616	0.00035623	2.2823	0.0012582	551.3007654519934	80.765	0.80798	80.765	80.354	81.162	0					44	18	3	0	0	0	0.074342	1	8291	8291		104.75	16.992	1	2947600			10363	7198	8492	8501	11177	11177					0.04034012131774034
EYATKISRF	9	Unmodified	_EYATKISRF_					0	0	0		nc|ENSG00000057757|Q9GZP4-2|PITHD1;ENSG00000057757|ENST00000246151|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	nc|ENSG00000057757|Q9GZP4-2|PITHD1	MSMS	OvCa99_classI_Rep5	1	557.799560546875	2	557.798206	1113.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.829	1	59.829	59.329	60.329	0								0	0	0	0.042186	1	5182	5182		80.455	17.148	1				10364	1238	8493	8502	11178	11178					0.029611279890104925
EYEKIGKHLKM	11	Unmodified	_EYEKIGKHLKM_					0	0	0			REV__ENSG00000141956|ENST00000398548|PRDM15	REV__ENSG00000141956|ENST00000398548|PRDM15	MULTI-MSMS	OvCa99_classI_Rep5	1	459.25018310546875	3	459.251595	1374.73296	-0.92725	-0.00042584	-2.0938	-0.00096156	-3.021	-0.0013874	459.2504580767522	27.465	0.49961	27.465	27.241	27.741	0					23	9	4	0	0	0	0.68588	1	818	818		34.501	3.643	1	178870	+		10365	19761	8494	8503	11179	11179					0.060579463053272775
EYEKIGKHLKM	11	Unmodified	_EYEKIGKHLKM_					0	0	0			REV__ENSG00000141956|ENST00000398548|PRDM15	REV__ENSG00000141956|ENST00000398548|PRDM15	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	459.251595	1374.73296	-0.92725	-0.00042584	-2.0938	-0.00096156	-3.021	-0.0013874	459.2504580767522	27.465	0.49961	27.465	27.241	27.741	0	0	0	NaN	34.501	23	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178870	+		10366	19761	8494	8503							0.060579463053272775
EYEQKKIEP	9	Unmodified	_EYEQKKIEP_					0	0	0			REV__BRCA1|p.N1265Kfs*4|1|0.89|ENSG00000012048|chr17:43091736-43091737|-/TT|frameshift_variant	REV__BRCA1|p.N1265Kfs*4|1|0.89|ENSG00000012048|chr17:43091736-43091737|-/TT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	582.3018798828125	2	582.300778	1162.587	1.513	0.00088101	1.6243	0.00094584	3.1373	0.0018268	582.3015019309466	120.16	0.70122	120.16	119.7	120.4	0					36	16	3	0	0	0	0.48047	1	13788	13788		44.377	0	1	1263200	+		10367	15709	8495	8504	11180	11180					0.012213870609684818
EYFFKKIKAS	10	Unmodified	_EYFFKKIKAS_					0	0	0		tr|A0A7D6VY56|A0A7D6VY56_9CLOTTetratricopeptiderepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15535PE=4SV=1	tr|A0A7D6VY56|A0A7D6VY56_9CLOTTetratricopeptiderepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15535PE=4SV=1	tr|A0A7D6VY56|A0A7D6VY56_9CLOTTetratricopeptiderepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15535PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	630.851318359375	2	630.852981	1259.69141	-4.2078	-0.0026545	-0.47855	-0.0003019	-4.6864	-0.0029564	630.852496591045	154.55	1.1406	153.09	152.8	153.94	-1.4517					82	27	4	0	0	0	0.6104	1	15301	15301		40.778	7.9657	1	266360			10368	35318	8496	8505	11181	11181					0.07195133608320248
EYFKSFNF	8	Unmodified	_EYFKSFNF_					0	0	0		ENSG00000151470|ENST00000425929|C4orf33	ENSG00000151470|ENST00000425929|C4orf33	ENSG00000151470|ENST00000425929|C4orf33	MULTI-MSMS	OvCa99_classI_Rep5	1	541.2540893554688	2	541.2531	1080.49165	1.5889	0.00086002	0.26252	0.00014209	1.8515	0.0010021	541.2531043616953	109	0.74385	109	108.71	109.46	0					45	16	4	0	0	0	0.45246	2	12331	12331;12355		82.305	21.333	1	1710300			10369	5556	8497	8506	11182;11183	11182					-0.045379213394198814
EYFSYPVSL	9	Unmodified	_EYFSYPVSL_					0	0	0		nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;nc|ENSG00000111319|P37088-3|SCNN1A	nc|ENSG00000111319|P37088-4|SCNN1A	nc|ENSG00000111319|P37088-4|SCNN1A	MULTI-MSMS	OvCa99_classI_Rep5	1	553.2691040039062	2	552.76604	1103.51753	2.1258	0.0011751	-0.54153	-0.00029934	1.5842	0.00087571	552.7654854834503	137.23	0.8652	137.23	136.68	137.54	0					35	17	4	0	0	0	0.33652	1	16004	16004		58.782	10.822	1	247550			10370	2820	8498	8507	11184	11184					-0.03009071887800019
EYGALSLKIF	10	Unmodified	_EYGALSLKIF_					0	0	0			REV__L1PA7_dup9238|chr10:48372221-48377370:+|1.4943041569802586|0.2795461482764699|2.42|429.0|303|3|anti-sense	REV__L1PA7_dup9238|chr10:48372221-48377370:+|1.4943041569802586|0.2795461482764699|2.42|429.0|303|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	570.8181762695312	2	570.818607	1139.62266	-1.8398	-0.0010502	1.5746	0.00089879	-0.26522	-0.00015139	570.8193122435389	125.61	1.4449	124.19	123.62	125.07	-1.4143					64	28	3	0	0	0	0.52439	2	11926	11914;11926		51.193	6.8155	1	97488	+		10371	28574	8499	8508	11185;11186	11186					0.0584346930859283
EYGFYHDFF	9	Unmodified	_EYGFYHDFF_					0	0	0		nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2	nc|ENSG00000143374|Q9BW92-2|TARS2	nc|ENSG00000143374|Q9BW92-2|TARS2	MULTI-MSMS	OvCa99_classI_Rep5	1	612.7551879882812	2	612.753464	1223.49238	1.8851	0.0011551	0.081993	5.0241E-05	1.9671	0.0012054	612.7533423635901	125.78	0.84069	125.78	125.53	126.37	0					47	17	4	0	0	0	0.21395	2	14547	14525;14547		73.975	17.254	1	1306900			10372	5044	8500	8509	11187;11188	11188					-0.1104312669040155
EYGKVEFVF	9	Unmodified	_EYGKVEFVF_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;ENST00000479185.1_1_2:218746916-218750490:-|nuORF;nc|ENSG00000079308|Q9HBL0-2|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	OvCa99_classI_Rep5	1	559.2831420898438	2	559.281857	1116.54916	1.895	0.0010598	0.017596	9.8411E-06	1.9125	0.0010697	559.28183521166	113.86	2.1525	113.86	113.57	115.73	0					119	46	5	0	0	0	0.068524	1	12980	12980		108.09	17.718	1	9382900			10373	1611	8501	8510	11189	11189					-0.004450791338513227
EYGMIIKSL	9	Unmodified	_EYGMIIKSL_					0	0	0		tr|A0A553SHF0|A0A553SHF0_NIACITypeIIIpantothenatekinaseOS=NialliacirculansOX=1397GN=coaXPE=3SV=1	tr|A0A553SHF0|A0A553SHF0_NIACITypeIIIpantothenatekinaseOS=NialliacirculansOX=1397GN=coaXPE=3SV=1	tr|A0A553SHF0|A0A553SHF0_NIACITypeIIIpantothenatekinaseOS=NialliacirculansOX=1397GN=coaXPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	527.2858276367188	2	527.286085	1052.55762	1.5076	0.00079491	-2.3246	-0.0012257	-0.81703	-0.00043081	527.2847414692535	98.415	1.2394	98.415	98.037	99.276	0					53	29	3	0	0	0	0.24951	1	10858	10858		68.787	2.3575	1	1174300			10374	33263	8502	8511	11190	11190					0.0334415151110079
EYGPIHILW	9	Unmodified	_EYGPIHILW_					0	0	0		nc|ENSG00000162627|Q9UNH6-2|SNX7;nc|ENSG00000162627|Q9UNH6|SNX7;ENSG00000162627|ENST00000306121|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	nc|ENSG00000162627|Q9UNH6-2|SNX7	MULTI-MSMS	OvCa99_classI_Rep5	1	564.298583984375	2	564.297842	1126.58113	1.9036	0.0010742	-0.51577	-0.00029105	1.3878	0.00078314	564.2974436363996	130.36	1.0955	130.36	130.06	131.15	0					42	22	2	0	0	0	0.042822	2	15135	15115;15135		124.32	57.895	1	1694100			10375	6207	8503	8512	11191;11192	11192					0.022903333399654002
EYHFRVSAE	9	Unmodified	_EYHFRVSAE_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2894897460938	2	569.269813	1136.52507	-0.70538	-0.00040155	4.0915	0.0023292	3.3861	0.0019276	569.2719464621503	53.368	0.12705	53.368	53.305	53.432	0					4	2	2	0	0	0	0.027462	1	4230	4230		35.618	8.9254	1	53669			10376	5793	8504	8513	11193	11193					-0.03772919567518329
EYIFPEKLV	9	Unmodified	_EYIFPEKLV_					0	0	0		ZBTB41|p.E760_E761insYIFP|1|0.06|ENSG00000177888|chr1:197159808-197159809|-/TGGAAAAATATA|inframe_insertion	ZBTB41|p.E760_E761insYIFP|1|0.06|ENSG00000177888|chr1:197159808-197159809|-/TGGAAAAATATA|inframe_insertion	ZBTB41|p.E760_E761insYIFP|1|0.06|ENSG00000177888|chr1:197159808-197159809|-/TGGAAAAATATA|inframe_insertion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	569.8348999023438	2	569.313158	1136.61176	-0.71017	-0.00040431	2.6139	0.0014881	1.9037	0.0010838	569.8157887152531	99.947	0.76234	97.622	97.417	98.179	-2.3253					29	14	3	0	0	0	0.027462	1	8966	8966		28.081	0	1	70839			10377	36313	8505	8514	11194	11194					0.04892066934326067
EYIINQIFQ	9	Unmodified	_EYIINQIFQ_					0	0	0			REV__ENSG00000109911|ENST00000640961|ELP4	REV__ENSG00000109911|ENST00000640961|ELP4	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3076171875	2	584.305864	1166.59717	-1.0505	-0.0006138	3.1685	0.0018514	2.118	0.0012376	584.3075985445785	101.72	3.868	99.456	98.883	102.75	-2.2665					195	74	4	0	0	0	0.44568	1	9190	9190		47.657	6.2307	1	505160	+		10378	17957	8506	8515	11195	11195					0.02053994786160729
EYIKFLDLF	9	Unmodified	_EYIKFLDLF_					0	0	0		nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799|CPLANE1	nc|ENSG00000197603|Q9H799|CPLANE1	MULTI-MSMS	OvCa99_classI_Rep5	1	594.3233032226562	2	594.320983	1186.62741	1.1354	0.00067479	0.48608	0.00028889	1.6215	0.00096368	594.3210269317847	154.42	0.89758	154.42	154.17	155.07	0					42	17	4	0	0	0	0.12515	1	18095	18095		90.37	16.395	1	234030			10379	8727	8507	8516	11196	11196					0.041563534513670675
EYIKFLRSI	9	Unmodified	_EYIKFLRSI_					0	0	0		ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2;ENST00000521233.1_1_6:114279792-114292096:-|nuORF	ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	OvCa99_classI_Rep5	1	584.8414306640625	2	584.839874	1167.66519	1.3985	0.00081792	0.65159	0.00038107	2.0501	0.001199	584.8402015860637	98.143	0.68399	98.143	97.912	98.596	0					43	15	3	0	0	0	0.023079	2	10822	10792;10822		143.37	60.623	1	12713000			10380	8632	8508	8517	11197;11198	11198					0.08806864436837714
EYIPKWEQF	9	Unmodified	_EYIPKWEQF_					0	0	0		ENSG00000114405|ENST00000462069|C3orf14	ENSG00000114405|ENST00000462069|C3orf14	ENSG00000114405|ENST00000462069|C3orf14	MULTI-MSMS	OvCa99_classI_Rep5	1	620.3067016601562	2	620.305864	1238.59717	1.8545	0.0011503	0.011532	7.1533E-06	1.866	0.0011575	620.305865674838	108.43	1.3008	108.43	108.11	109.41	0					81	29	5	0	0	0	0.029147	2	12262	12239;12262		136.27	56.556	1	12729000			10381	3017	8509	8518	11199;11200	11200					-0.012580052138218889
EYIQQEFLP	9	Unmodified	_EYIQQEFLP_					0	0	0			REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	OvCa9_classI_Rep2	2	584.3081665039062	2	583.790047	1165.56554	-1.1432	-0.00066742	-3.6687	-0.0021418	-4.812	-0.0028092	583.7878267309405	100.66	0.24876	99.832	99.658	99.906	-0.83051					6	4	2	0	0	0	0.027462	1	9217	9217		47.657	13.736	1	8201.5	+		10382	17113	8510	8519	11201	11201					-0.010619979677585434
EYIRSLNQF	9	Unmodified	_EYIRSLNQF_					0	0	0		ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF;ENST00000591367.5_1_18:21109371-21111665:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MULTI-MSMS	OvCa99_classI_Rep5	1	585.3023071289062	2	585.301113	1168.58767	2.382	0.0013942	0.12942	7.5748E-05	2.5114	0.00147	585.3009196871114	90.342	1.4415	90.342	90.06	91.502	0					100	35	6	0	0	0	0.010478	2	9666	9666;9695		167.23	27.258	1	14277000			10383	4916	8511	8520	11202;11203	11202					0.010122265006657472
EYKKDFEKW	9	Unmodified	_EYKKDFEKW_					0	0	0		nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB	nc|ENSG00000183091|P20929-3|NEB	nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	OvCa99_classI_Rep5	1	636.8184204101562	2	636.816596	1271.61864	-0.15528	-9.8882E-05	0.11903	7.5798E-05	-0.03625	-2.3085E-05	636.8165891003451	55.24	0.62449	55.24	54.935	55.559	0					30	14	3	0	0	0	0.14855	1	4514	4514		85.161	17.667	1	853550			10384	8049	8512	8521	11204	11204					-0.0063062018509754125
EYKVFGVL	8	Unmodified	_EYKVFGVL_					0	0	0		ENSG00000141179|ENST00000268896|PCTP	ENSG00000141179|ENST00000268896|PCTP	ENSG00000141179|ENST00000268896|PCTP	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.7673034667969	2	477.768386	953.522219	-1.0584	-0.00050565	-3.4799	-0.0016626	-4.5382	-0.0021682	477.766541573941	88.764	1.542	86.161	85.629	87.171	-2.6027					74	30	4	0	0	0	0.57878	1	7581	7581		68.485	8.1907	1	600180			10385	4898	8513	8522	11205	11205					0.04359857045631088
EYLENALKL	9	Unmodified	_EYLENALKL_					0	0	0		ENSG00000162654|ENST00000355754|GBP4;GBP6|p.T346Hfs*15|1|0.24|ENSG00000183347|chr1:89381853-89381854|-/C|frameshift_variant;ENSG00000183347|ENST00000370456|GBP6;ENSG00000213512|ENST00000294671|GBP7	ENSG00000162654|ENST00000355754|GBP4;GBP6|p.T346Hfs*15|1|0.24|ENSG00000183347|chr1:89381853-89381854|-/C|frameshift_variant;ENSG00000213512|ENST00000294671|GBP7	ENSG00000162654|ENST00000355754|GBP4	MULTI-MSMS	OvCa99_classI_Rep5	1	546.7998046875	2	546.800414	1091.58628	2.0163	0.0011025	-0.29683	-0.00016231	1.7194	0.00094018	546.8001203037154	107.36	1.9187	107.36	107.14	109.06	0					93	44	5	0	0	0	0.11471	1	12097	12097		93.195	8.0346	1	12261000			10386	6212;8069;9131	8514	8523	11206	11206					0.04414592411899321
EYLGKLVRF	9	Unmodified	_EYLGKLVRF_					0	0	0		ENST00000489749.1_1_2:7018228-7023923:+|nuORF;ENSG00000134321|ENST00000382040|RSAD2	ENST00000489749.1_1_2:7018228-7023923:+|nuORF	ENST00000489749.1_1_2:7018228-7023923:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	562.8273315429688	2	562.826766	1123.63898	2.1312	0.0011995	-0.012401	-6.9798E-06	2.1188	0.0011925	562.8266269108739	92.405	1.5405	92.405	92.132	93.673	0					85	36	4	0	0	0	0.083631	1	9973	9973		101.6	46.824	1	8821300			10387	4282	8515	8524	11207	11207					0.08210595265359188
EYLKHHNRI	9	Unmodified	_EYLKHHNRI_					0	0	0		ENSG00000125812|ENST00000338121|GZF1;nc|ENSG00000125812|Q9H116-4|GZF1	ENSG00000125812|ENST00000338121|GZF1	ENSG00000125812|ENST00000338121|GZF1	MULTI-MSMS	OvCa99_classI_Rep5	1	605.3275756835938	2	605.327996	1208.64144	0.26945	0.0001631	-0.87681	-0.00053076	-0.60736	-0.00036765	605.3273373904697	31.883	0.54634	31.883	31.708	32.254	0					30	10	4	0	0	0	0.083631	1	1350	1350		85.359	47.851	1	436910			10388	3737	8516	8525	11208	11208					0.04546443723052107
EYLKLLHSF	9	Unmodified	_EYLKLLHSF_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;ENST00000491541.1_1_22:42287274-42295397:+|nuORF;ENST00000424354.5_1_22:42276758-42295397:+|nuORF	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	OvCa99_classI_Rep5	1	575.3204956054688	2	575.318774	1148.623	0.78981	0.00045439	1.2412	0.00071409	2.031	0.0011685	575.3193691049711	101.36	1.1869	101.36	100.98	102.17	0					60	27	4	0	0	0	0.0085934	2	11263	11263;11291		211.39	129.08	1	3758800			10389	8906	8517	8526	11209;11210	11209					0.054628890284675435
EYLKVDAQF	9	Unmodified	_EYLKVDAQF_					0	0	0		ENSG00000134684|ENST00000373477|YARS1;PUM1-YARS|1|fusion;PUM1-YARS|2|fusion;ENST00000466052.1_1_1:33256818-33263474:-|nuORF;ENST00000470377.1_1_1:33256708-33272178:-|nuORF;ENST00000481895.5_1_1:33256818-33282875:-|nuORF;YARS|p.L234Wfs*10|1|0.15|ENSG00000134684|chr1:32787061-32787062|-/GCCAG|frameshift_variant;YARS|p.D233Lfs*13|1|0.09|ENSG00000134684|chr1:32787063-32787064|-/CCTGAAGGAAG|frameshift_variant	ENSG00000134684|ENST00000373477|YARS1	ENSG00000134684|ENST00000373477|YARS1	MULTI-MSMS	OvCa99_classI_Rep5	1	556.7839965820312	2	556.784764	1111.55498	2.7328	0.0015216	-0.26075	-0.00014518	2.472	0.0013764	556.7845339815053	96.481	1.3535	96.481	96.126	97.479	0					78	31	4	0	0	0	0.022645	1	10565	10565		143.89	35.799	1	6635500			10390	4316	8518	8527	11211	11211					0.0036601937779323634
EYLKVKKF	8	Unmodified	_EYLKVKKF_					0	0	0		tr|A0A7D6VSU1|A0A7D6VSU1_9CLOTFRGdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06480PE=4SV=1	tr|A0A7D6VSU1|A0A7D6VSU1_9CLOTFRGdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06480PE=4SV=1	tr|A0A7D6VSU1|A0A7D6VSU1_9CLOTFRGdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06480PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	527.817138671875	2	527.81841	1053.62227	0.15404	8.1304E-05	-0.13429	-7.0882E-05	0.019746	1.0422E-05	527.8180746611931	131.65	2.3091	131.42	131.15	133.46	-0.22696					124	46	4	0	0	0	0.65582	2	12971	12971;13021		52.299	9.8247	1	610490			10391	35057	8519	8528	11212;11213	11212					0.09760094379430484
EYLKVKKF	8	Unmodified	_EYLKVKKF_					0	0	0		tr|A0A7D6VSU1|A0A7D6VSU1_9CLOTFRGdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06480PE=4SV=1	tr|A0A7D6VSU1|A0A7D6VSU1_9CLOTFRGdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06480PE=4SV=1	tr|A0A7D6VSU1|A0A7D6VSU1_9CLOTFRGdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06480PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.8168334960938	2	527.81841	1053.62227	2.908	0.0015349	-3.3438	-0.0017649	-0.43577	-0.00023001	527.8164130855859	133.06	2.3118	131.53	131.12	133.43	-1.5238					88	45	3	0	0	0	0.7224	1	12809	12809		38.806	3.6054	1	542020			10392	35057	8519	8528	11214	11214					0.09760094379430484
EYLLQSLLKA	10	Unmodified	_EYLLQSLLKA_					0	0	0			REV__ENSG00000134516|ENST00000520908|DOCK2;REV__ENST00000520836.5_1_5:169174421-169268422:+|nuORF	REV__ENSG00000134516|ENST00000520908|DOCK2	MULTI-MSMS	OvCa9_classI_Rep2	2	589.342041015625	2	589.344989	1176.67542	-3.0463	-0.0017953	-0.38122	-0.00022467	-3.4276	-0.00202	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.7759	1	15081	15081		21.96	1.9631	1	272220	+		10393	19210;27063	8520	8529	11215	11215					0.09415427371436635
EYLLRLSN	8	Unmodified	_EYLLRLSN_					0	0	0			REV__nc|ENSG00000135951|Q9BZW7-2|TSGA10	REV__nc|ENSG00000135951|Q9BZW7-2|TSGA10	MULTI-MSMS	OvCa9_classI_Rep2	2	504.2800598144531	2	504.279649	1006.54475	-1.6431	-0.00082856	1.1851	0.0005976	-0.458	-0.00023096	504.28013580529404	50.546	2.428	47.752	47.331	49.759	-2.794					113	47	4	0	0	0	0.57878	2	3268	3268;3288		68.485	5.1784	1	790080	+		10394	19339	8521	8530	11216;11217	11216					0.041734564432204024
EYLLRLSN	8	Unmodified	_EYLLRLSN_					0	0	0			REV__nc|ENSG00000135951|Q9BZW7-2|TSGA10	REV__nc|ENSG00000135951|Q9BZW7-2|TSGA10	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.2797546386719	2	504.279649	1006.54475	-1.2479	-0.00062928	0.79999	0.00040342	-0.44789	-0.00022586	504.2798157238675	50.925	2.3773	47.752	47.308	49.685	-3.1734					204	46	7	0	0	0	0.48084	4	2953	2941;2953;2991;3016		79.451	16.163	1	3361300	+		10395	19339	8521	8530	11218;11219;11220;11221	11219					0.041734564432204024
EYLPIGGLAEF	11	Unmodified	_EYLPIGGLAEF_					0	0	0		ENST00000492378.1_1_16:58756047-58768228:-|nuORF;ENST00000564400.5_1_16:58750074-58768228:-|nuORF;ENST00000496461.5_1_16:58752244-58768198:-|nuORF;ENST00000568368.1_1_16:58756047-58768190:-|nuORF;ENSG00000125166|ENST00000245206|GOT2	ENST00000492378.1_1_16:58756047-58768228:-|nuORF	ENST00000492378.1_1_16:58756047-58768228:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	604.8155517578125	2	604.813522	1207.61249	1.1635	0.00070372	0.92101	0.00055704	2.0845	0.0012608	604.8139569809358	157.02	1.1578	157.02	156.75	157.91	0					56	22	4	0	0	0	0.31264	1	18392	18392		67.494	9.2637	1	486380			10396	12725	8522	8531	11222	11222					0.016988615833724907
EYLQVPGL	8	Unmodified	_EYLQVPGL_					0	0	0		ENST00000561903.6_1_16:1830271-1830817:+|nuORF	ENST00000561903.6_1_16:1830271-1830817:+|nuORF	ENST00000561903.6_1_16:1830271-1830817:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	460.2279968261719	2	459.750193	917.485833	-0.36428	-0.00016748	3.667	0.0016859	3.3027	0.0015184	459.7517240667779	98.321	0.92838	96.561	96.11	97.038	-1.7595					20	17	2	0	0	0	0.028476	1	6524	6524		42.474	17.024	1	15687			10397	13763	8523	8532	11223	11223					0.023789801489101592
EYLRNNFR	8	Unmodified	_EYLRNNFR_					0	0	0		PTPRG|p.I977Mfs*4|1|0.42|ENSG00000144724|chr3:62269090-62269090|T/-|frameshift_variant;nc|ENSG00000144724|P23470-2|PTPRG;ENSG00000144724|ENST00000474889|PTPRG;PTPRG|p.N429Tfs*26|1|0.41|ENSG00000144724|chr3:62195126-62195126|G/-|frameshift_variant	PTPRG|p.I977Mfs*4|1|0.42|ENSG00000144724|chr3:62269090-62269090|T/-|frameshift_variant	PTPRG|p.I977Mfs*4|1|0.42|ENSG00000144724|chr3:62269090-62269090|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	556.2861328125	2	556.285797	1110.55704	1.8039	0.0010035	-1.8361	-0.0010214	-0.032211	-1.7918E-05	556.2846347321127	29.521	0.87109	26.811	26.636	27.508	-2.7097					46	17	3	0	0	0	0.73626	1	775	775		33.516	7.9415	1	197300			10398	5177	8524	8533	11224	11224					0.00618492906278334
EYLRQIFRL	9	Unmodified	_EYLRQIFRL_					0	0	0		ENST00000438378.2_1_2:132275414-132277996:+|nuORF;ENST00000482171.5_1_2:130910130-130912221:-|nuORF;nc|ENSG00000136699|Q9NXE4-5|SMPD4;nc|ENSG00000136699|Q9NXE4-9|SMPD4;nc|ENSG00000136699|Q9NXE4-10|SMPD4;nc|ENSG00000136699|Q9NXE4-7|SMPD4;nc|ENSG00000136699|Q9NXE4-8|SMPD4;nc|ENSG00000136699|Q9NXE4-3|SMPD4;nc|ENSG00000136699|Q9NXE4-6|SMPD4;ENSG00000136699|ENST00000680298|SMPD4;nc|ENSG00000136699|Q9NXE4-2|SMPD4;nc|ENSG00000136699|Q9NXE4|SMPD4;nc|ENSG00000136699|Q9NXE4-4|SMPD4	ENST00000438378.2_1_2:132275414-132277996:+|nuORF	ENST00000438378.2_1_2:132275414-132277996:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	619.357666015625	2	619.356222	1236.69789	0.11507	7.1269E-05	0.73283	0.00045388	0.8479	0.00052515	619.3565580347822	105.49	0.8755	105.49	105.22	106.1	0					58	19	4	0	0	0	0.018335	2	11834	11834;11855		120.62	5.1269	1	3503700			10399	4503	8525	8534	11225;11226	11225					0.08901071559716911
EYLSKLFD	8	Unmodified	_EYLSKLFD_					0	0	0			REV__ENSG00000161850|ENST00000257974|KRT82	REV__ENSG00000161850|ENST00000257974|KRT82	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.75885009765625	2	507.760758	1013.50696	-1.7165	-0.00087155	-0.69255	-0.00035165	-2.409	-0.0012232	507.7602660317643	146.72	1.2631	145.28	144.91	146.17	-1.4357					50	24	3	0	0	0	0.73938	1	14430	14430		31.955	1.4512	1	97883	+	+	10400	16225	8526	8535	11227	11227					0.0007494545776580708
EYLSRHWLF	9	Unmodified	_EYLSRHWLF_					0	0	0		ENSG00000115486|ENST00000233838|GGCX;nc|ENSG00000115486|P38435-2|GGCX;ENST00000423570.5_1_2:85782605-85785723:-|nuORF	ENSG00000115486|ENST00000233838|GGCX	ENSG00000115486|ENST00000233838|GGCX	MULTI-MSMS	OvCa99_classI_Rep5	1	625.8209838867188	2	625.819473	1249.62439	-1.3972	-0.00087441	0.027212	1.703E-05	-1.37	-0.00085738	625.8193227664899	104.42	0.93788	104.42	104.11	105.04	0					50	21	3	0	0	0	0.094616	1	11699	11699		98.629	32.826	1	2582900			10401	3102	8527	8536	11228	11228					0.009565231172246058
EYLTKVDKL	9	Unmodified	_EYLTKVDKL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa99_classI_Rep5	1	554.8170776367188	2	554.816064	1107.61758	0.069448	3.8531E-05	-1.2524	-0.00069484	-1.1829	-0.00065631	554.8151153056367	69.041	1.399	69.041	68.523	69.922	0					99	33	4	0	0	0	0.025955	2	6563	6533;6563		139.97	40.596	1	21135000			10402	4906	8528	8537	11229;11230	11230					0.06807165446002728
EYLTRHVI	8	Unmodified	_EYLTRHVI_					0	0	0		nc|ENSG00000163513|P37173-2|TGFBR2;TGFBR2|p.R497Lfs*19|1|0.04|ENSG00000163513|chr3:30688476-30688477|-/T|frameshift_variant;ENSG00000163513|ENST00000295754|TGFBR2	nc|ENSG00000163513|P37173-2|TGFBR2	nc|ENSG00000163513|P37173-2|TGFBR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.269287109375	2	515.787641	1029.56073	-0.43129	-0.00022245	0.25801	0.00013308	-0.17328	-8.9377E-05	515.7875940091802	30.061	0.64792	30.061	29.735	30.383	0					28	12	3	0	0	0	0.028476	1	1127	1127		57.811	17.239	1	441180			10403	15138	8529	8538	11231	11231					0.047131626801501625
EYLTRHVI	8	Unmodified	_EYLTRHVI_					0	0	0		nc|ENSG00000163513|P37173-2|TGFBR2;TGFBR2|p.R497Lfs*19|1|0.04|ENSG00000163513|chr3:30688476-30688477|-/T|frameshift_variant;ENSG00000163513|ENST00000295754|TGFBR2	nc|ENSG00000163513|P37173-2|TGFBR2	nc|ENSG00000163513|P37173-2|TGFBR2	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7869873046875	2	515.787641	1029.56073	0.6162	0.00031783	-0.30048	-0.00015498	0.31572	0.00016285	515.7872216200942	34.731	1.4032	31.943	31.648	33.051	-2.7881					67	27	4	0	0	0	0.60331	2	1047	1047;1070		63.306	22.734	1	298250			10404	15138	8529	8538	11232;11233	11232					0.047131626801501625
EYLWMVIL	8	Unmodified	_EYLWMVIL_					0	0	0		ENSG00000168575|ENST00000520262|SLC20A2	ENSG00000168575|ENST00000520262|SLC20A2	ENSG00000168575|ENST00000520262|SLC20A2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.8200073242188	2	533.785721	1065.55689	-1.3861	-0.0007399	0.97755	0.0005218	-0.40859	-0.0002181	533.7861393061897	52.342	1.1537	49.134	48.943	50.097	-3.208					27	22	2	0	0	0	0.028476	1	3118	3118		16.705	0	1	63306			10405	6922	8530	8539	11234	11234					0.02673356862055698
EYMKHTRLF	9	Oxidation (M)	_EYM(Oxidation (M))KHTRLF_		EYM(1)KHTRLF		EYM(43)KHTRLF	0	0	1		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000465046.1_1_17:18149056-18149185:-|nuORF;ENST00000487369.5_1_17:18148865-18149298:-|nuORF	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	OvCa99_classI_Rep5	1	414.2102966308594	3	414.209619	1239.60703	0.43498	0.00018017	-0.58937	-0.00024412	-0.15439	-6.3951E-05	414.20937081363417	47.903	0.78231	47.903	47.422	48.204	0					33	17	2	0	0	0	0.49652	1	3461	3461		42.864	12.295	1	3046500			10406	7708	8531	8540	11235	11235		230			-0.003191404800872988
EYMKHTRLF	9	Unmodified	_EYMKHTRLF_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000465046.1_1_17:18149056-18149185:-|nuORF;ENST00000487369.5_1_17:18148865-18149298:-|nuORF	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	OvCa99_classI_Rep5	1	612.8160400390625	2	612.813333	1223.61211	-0.46024	-0.00028204	-0.092791	-5.6864E-05	-0.55303	-0.0003389	612.8132487879242	59.73	2.2125	59.73	59.452	61.665	0					132	53	5	0	0	0	0.0076252	3	5143	5143;5170;5201		153.04	79.061	1	28679000			10407	7708	8531	8541	11236;11237;11238	11236					0.009251633825215322
EYMKVQTEI	9	Unmodified	_EYMKVQTEI_					0	0	0		MAP3K7|p.D557Efs*5|1|0.04|ENSG00000135341|chr6:90516651-90516652|-/TTGTTTATTT|frameshift_variant;nc|ENSG00000135341|O43318-2|MAP3K7;ENSG00000135341|ENST00000369329|MAP3K7	MAP3K7|p.D557Efs*5|1|0.04|ENSG00000135341|chr6:90516651-90516652|-/TTGTTTATTT|frameshift_variant	MAP3K7|p.D557Efs*5|1|0.04|ENSG00000135341|chr6:90516651-90516652|-/TTGTTTATTT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	570.7857055664062	2	570.783907	1139.55326	1.4547	0.00083031	0.66709	0.00038077	2.1218	0.0012111	570.7840255278055	80.835	0.50565	80.835	80.615	81.12	0					29	11	3	0	0	0	0.16264	1	8304	8304		82.75	5.9763	1	1380600			10408	4369	8532	8542	11239	11239					-0.01093357702461617
EYNEVANLF	9	Unmodified	_EYNEVANLF_					0	0	0		nc|ENSG00000111224|Q9NR21-5|PARP11;nc|ENSG00000111224|Q9NR21-1|PARP11;ENSG00000111224|ENST00000228820|PARP11;nc|ENSG00000111224|Q9NR21-2|PARP11	nc|ENSG00000111224|Q9NR21-5|PARP11	nc|ENSG00000111224|Q9NR21-5|PARP11	MULTI-MSMS	OvCa99_classI_Rep5	1	549.7583618164062	2	549.758746	1097.50294	1.7162	0.00094349	-0.16052	-8.8245E-05	1.5557	0.00085524	549.7584282067218	128.96	0.8421	128.96	128.7	129.54	0					38	17	3	0	0	0	0.33652	1	14948	14948		58.782	0	1	390820			10409	2812	8533	8543	11240	11240					-0.041911440359626795
EYNKSWQTF	9	Unmodified	_EYNKSWQTF_					0	0	0		ZNF583|p.G330Afs*43|1|0.13|ENSG00000198440|chr19:56423646-56423647|-/CATTGGACAAGGAT|frameshift_variant;ENSG00000198440|ENST00000333201|ZNF583	ZNF583|p.G330Afs*43|1|0.13|ENSG00000198440|chr19:56423646-56423647|-/CATTGGACAAGGAT|frameshift_variant	ZNF583|p.G330Afs*43|1|0.13|ENSG00000198440|chr19:56423646-56423647|-/CATTGGACAAGGAT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	601.7788696289062	2	601.77747	1201.54039	1.1928	0.00071778	0.82122	0.00049419	2.014	0.001212	601.777903983593	81.517	0.6909	81.517	81.288	81.979	0					39	16	4	0	0	0	0.012051	1	8406	8406		162.25	66.062	1	3392600			10410	8818	8534	8544	11241	11241					-0.05232052770338669
EYNNNFHVL	9	Unmodified	_EYNNNFHVL_					0	0	0		ENSG00000151151|ENST00000373935|IPMK;ENST00000425988.1_1_13:23411483-23411888:-|nuORF	ENSG00000151151|ENST00000373935|IPMK	ENSG00000151151|ENST00000373935|IPMK	MULTI-MSMS	OvCa99_classI_Rep5	1	575.2717895507812	2	575.269813	1148.52507	1.6004	0.00092069	0.61347	0.00035291	2.2139	0.0012736	575.2701288897454	87.281	1.1573	87.281	86.972	88.13	0					53	27	4	0	0	0	0.25214	1	9238	9238		68.485	2.6815	1	11876000			10411	5538	8535	8545	11242	11242					-0.0432491956753438
EYNSDLHQF	9	Unmodified	_EYNSDLHQF_					0	0	0		ENST00000465029.5_1_2:111419157-111435602:-|nuORF;nc|ENSG00000169679|O43683-2|BUB1;nc|ENSG00000169679|O43683-3|BUB1;ENSG00000169679|ENST00000302759|BUB1	ENST00000465029.5_1_2:111419157-111435602:-|nuORF	ENST00000465029.5_1_2:111419157-111435602:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	576.751220703125	2	576.751453	1151.48835	0.22888	0.00013201	-0.62948	-0.00036305	-0.4006	-0.00023105	576.7509676641376	72.08	0.84841	72.08	71.835	72.684	0					36	20	2	0	0	0	0.16562	1	6989	6989		82.241	28.889	1	5943000			10412	7028	8536	8546	11243	11243					-0.08133216184091907
EYNTIKDKF	9	Unmodified	_EYNTIKDKF_					0	0	0		nc|ENSG00000173200|Q460N3-2|PARP15;ENSG00000173200|ENST00000464300|PARP15	nc|ENSG00000173200|Q460N3-2|PARP15	nc|ENSG00000173200|Q460N3-2|PARP15	MULTI-MSMS	OvCa99_classI_Rep5	1	579.2994384765625	2	579.295496	1156.57644	-1.1092	-0.00064254	0.10056	5.8254E-05	-1.0086	-0.00058428	579.2953933732331	59.48	0.5754	59.48	59.304	59.879	0					30	14	3	0	0	0	0.17606	1	5131	5131		80.455	6.1996	1	1622000			10413	7358	8537	8547	11244	11244					0.004414044065015332
EYPDRIMN	8	Unmodified	_EYPDRIMN_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000101162|ENST00000217133|TUBB1;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;ENST00000404155.1_1_6:3177457-3179994:-|nuORF	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000404155.1_1_6:3177457-3179994:-|nuORF	ENSG00000258947|ENST00000315491|TUBB3	MULTI-MSMS	OvCa99_classI_Rep5	1	519.2410278320312	2	519.239667	1036.46478	-0.36621	-0.00019015	-0.27259	-0.00014154	-0.63879	-0.00033169	519.2394697277111	64.899	1.9913	64.899	64.461	66.452	0					129	49	4	0	0	0	0.17036	2	5944	5908;5944		129.68	52.836	1	24342000			10414	9485;8579;11449	8538	8548	11245;11246	11246					-0.05199353222269565
EYPDRIMNTF	10	Unmodified	_EYPDRIMNTF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	MULTI-MSMS	OvCa99_classI_Rep5	1	643.2996826171875	2	643.297713	1284.58087	2.623	0.0016874	-1.9577	-0.0012594	0.66531	0.00042799	643.2971108112338	100.55	5.3363	100.55	100.11	105.44	0					398	125	6	0	0	0	3.2037E-13	8	11128	11128;11158;11188;11218;11248;11278;11308;11332		258.83	173.91	1	457270000			10415	9485;8579	8539	8549	11247;11248;11249;11250;11251;11252;11253;11254	11247					-0.050034544422260296
EYPKFLKRF	9	Unmodified	_EYPKFLKRF_					0	0	0		nc|ENSG00000113163|Q9Y5P4-3|CERT1;nc|ENSG00000113163|Q9Y5P4-2|CERT1;ENSG00000113163|ENST00000643780|CERT1	nc|ENSG00000113163|Q9Y5P4-3|CERT1	nc|ENSG00000113163|Q9Y5P4-3|CERT1	MULTI-MSMS	OvCa99_classI_Rep5	1	614.3489990234375	2	614.347866	1226.68118	2.2112	0.0013585	-0.23473	-0.0001442	1.9765	0.0012143	614.3475975340422	74.933	0.8113	74.933	74.557	75.369	0					42	19	3	0	0	0	0.40667	1	7439	7439		51.335	9.9088	1	2112700			10416	14965	8540	8550	11255	11255					0.0769057067373069
EYPRETFSF	9	Unmodified	_EYPRETFSF_					0	0	0		ENSG00000162777|ENST00000357640|DENND2D;nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENST00000473682.5_1_1:111740397-111743081:-|nuORF	ENSG00000162777|ENST00000357640|DENND2D;ENST00000473682.5_1_1:111740397-111743081:-|nuORF	ENSG00000162777|ENST00000357640|DENND2D	MULTI-MSMS	OvCa99_classI_Rep5	1	588.2731323242188	2	588.272021	1174.52949	3.1452	0.0018502	-1.0538	-0.00061989	2.0914	0.0012303	588.2713320787541	97.45	1.1121	97.45	97.135	98.247	0					64	25	4	0	0	0	0.026923	2	10690	10690;10722		138.83	28.706	1	3160800			10417	6233;12418	8541	8551	11256;11257	11256					-0.050794551446415426
EYQKVGQSF	9	Unmodified	_EYQKVGQSF_					0	0	0		nc|ENSG00000178996|Q96RF0-3|SNX18;ENSG00000178996|ENST00000381410|SNX18;nc|ENSG00000178996|Q96RF0|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	nc|ENSG00000178996|Q96RF0-3|SNX18	MULTI-MSMS	OvCa99_classI_Rep5	1	543.2679443359375	2	543.266739	1084.51892	-0.56351	-0.00030614	1.0516	0.00057132	0.48812	0.00026518	543.2670849682806	59.082	1.3838	59.082	58.696	60.079	0					99	35	6	0	0	0	0.3249	1	5076	5076		60.118	7.1816	1	9181500			10418	7791	8542	8552	11258	11258					-0.019954377990416106
EYQKVWNLF	9	Unmodified	_EYQKVWNLF_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	OvCa99_classI_Rep5	1	613.814697265625	2	613.813856	1225.61316	1.6928	0.0010391	-0.31546	-0.00019363	1.3773	0.00084543	613.813797553342	122.74	4.5122	122.74	122.4	126.91	0					278	100	6	0	0	0	0.0069927	5	14149	14125;14149;14173;14198;14223		191.63	92.996	1	51750000			10419	1252	8543	8553	11259;11260;11261;11262;11263	11260					0.009377010230764427
EYRDKSTL	8	Unmodified	_EYRDKSTL_					0	0	0		nc|ENSG00000066248|Q8N5V2-2|NGEF;nc|ENSG00000066248|Q8N5V2-3|NGEF;ENSG00000066248|ENST00000264051|NGEF	nc|ENSG00000066248|Q8N5V2-2|NGEF	nc|ENSG00000066248|Q8N5V2-2|NGEF	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.8217468261719	2	506.258914	1010.50327	-0.6071	-0.00030735	0.20834	0.00010548	-0.39876	-0.00020188	506.75850029327967	69.808	0.24579	67.238	67.115	67.361	-2.5707					6	4	2	0	0	0	0.028476	1	5544	5544		29.15	7.1897	1	4089.7			10420	1347	8544	8554	11264	11264					-0.0015572431608461557
EYRPEFSNF	9	Unmodified	_EYRPEFSNF_					0	0	0		ENSG00000102699|ENST00000381989|PARP4;PARP4|p.Y1344Afs*5|1|0.08|ENSG00000102699|chr13:24435111-24435112|-/GC|frameshift_variant;ENST00000446672.2_1_13:19931694-19949148:+|nuORF	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	OvCa99_classI_Rep5	1	594.7708740234375	2	594.769645	1187.52474	2.0171	0.0011997	0.38651	0.00022989	2.4037	0.0014296	594.7697309015763	92.595	0.75016	92.595	92.343	93.093	0					44	17	4	0	0	0	0.07097	1	10014	10014		106.68	42.476	1	3683400			10421	2249	8545	8555	11265	11265					-0.06152339287382347
EYSKDTLIN	9	Unmodified	_EYSKDTLIN_					0	0	0			REV__SPTA1|p.V2114Gfs*21|1|0.16|ENSG00000163554|chr1:158620246-158620247|-/ATCTTCTAAGTCTCCTTTTTCTAGGTCATTTACCC|frameshift_variant	REV__SPTA1|p.V2114Gfs*21|1|0.16|ENSG00000163554|chr1:158620246-158620247|-/ATCTTCTAAGTCTCCTTTTTCTAGGTCATTTACCC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.2674560546875	2	541.771854	1081.52915	-0.84407	-0.00045729	-1.763	-0.00095513	-2.607	-0.0014124	542.2722960264018	77.618	0.63078	74.802	74.632	75.263	-2.8165					17	12	2	0	0	0	0.027411	1	6202	6202		54.776	13.998	1	35339	+		10422	29449	8546	8556	11266	11266					-0.008348748644721127
EYSKQMQRF	9	Unmodified	_EYSKQMQRF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000463172.5_1_1:32757770-32792715:+|nuORF;ENST00000481281.5_1_1:32757770-32793222:+|nuORF;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	OvCa99_classI_Rep5	1	608.7932739257812	2	608.792598	1215.57064	-0.25621	-0.00015598	-0.24892	-0.00015154	-0.50514	-0.00030752	608.7924979909817	48.29	1.9153	48.29	48.073	49.988	0					98	43	5	0	0	0	0.019133	2	3521	3521;3551		148.04	76.165	1	19597000			10423	3180;8632	8547	8557	11267;11268	11267					-0.028520173767901724
EYSKYLQQAF	10	Unmodified	_EYSKYLQQAF_					0	0	0		nc|ENSG00000162702|Q9Y2X9-2|ZNF281;ENSG00000162702|ENST00000367353|ZNF281	nc|ENSG00000162702|Q9Y2X9-2|ZNF281	nc|ENSG00000162702|Q9Y2X9-2|ZNF281	MULTI-MSMS	OvCa99_classI_Rep5	1	638.8167724609375	2	638.814053	1275.61355	2.5248	0.0016129	-0.32526	-0.00020778	2.1995	0.0014051	638.8137065250847	95.779	0.96266	95.779	95.538	96.501	0					55	22	4	0	0	0	0.05764	2	10458	10458;10486		126.24	58.749	1	4866800			10424	6216	8548	8558	11269;11270	11269					-0.013229240477357962
EYTAKIALL	9	Unmodified	_EYTAKIALL_					0	0	0		ENSG00000092820|ENST00000367075|EZR;EZR-PARP3|1|fusion	ENSG00000092820|ENST00000367075|EZR;EZR-PARP3|1|fusion	EZR-PARP3|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	511.3016357421875	2	511.30005	1020.58555	2.3599	0.0012066	0.096526	4.9354E-05	2.4564	0.001256	511.29996991621744	102.84	0.59154	102.84	102.59	103.18	0					22	13	2	0	0	0	0.079296	1	11467	11467		102.77	11.997	1	2004800			10425	14317;1900	8549	8559	11271	11271					0.07607797762852897
EYTDVLQKI	9	Unmodified	_EYTDVLQKI_					0	0	0		ENST00000592284.5_1_19:55593146-55593922:+|nuORF;nc|ENSG00000131037|Q8TE68-4|EPS8L1;ENST00000589362.5_1_19:55593317-55598979:+|nuORF;nc|ENSG00000131037|Q8TE68-3|EPS8L1;nc|ENSG00000131037|Q8TE68-2|EPS8L1;ENSG00000131037|ENST00000201647|EPS8L1	ENST00000592284.5_1_19:55593146-55593922:+|nuORF	ENST00000592284.5_1_19:55593146-55593922:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	554.7991943359375	2	554.797872	1107.58119	2.6324	0.0014604	-1.1	-0.00061025	1.5324	0.0008502	554.7972972615952	101.04	2.1155	101.04	100.69	102.81	0					126	49	5	0	0	0	0.0094524	2	11201	11201;11230		171.38	50.764	1	32874000			10426	4039	8550	8560	11272;11273	11272					0.031702885492677524
EYTDVYPEI	9	Unmodified	_EYTDVYPEI_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2;nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENSG00000179222|ENST00000326587|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51640434-51640983:+|nuORF	nc|ENSG00000102316|Q9UNF1-2|MAGED2;nc|ENSG00000179222|Q9Y5V3-2|MAGED1	nc|ENSG00000179222|Q9Y5V3-2|MAGED1	MULTI-MSMS	OvCa99_classI_Rep5	1	564.760498046875	2	564.758412	1127.50227	1.5669	0.0008849	0.82888	0.00046812	2.3957	0.001353	564.7586349468262	115.12	1.3532	115.12	114.7	116.05	0					91	28	5	0	0	0	0.16524	1	13137	13137		82.305	10.428	1	992350			10427	7811;2236	8551	8561	11274	11274					-0.056379834756626224
EYTELAKL	8	Unmodified	_EYTELAKL_					0	0	0			REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-MSMS	OvCa99_classI_Rep5	1	483.762451171875	2	483.760758	965.506963	2.5909	0.0012534	-0.058016	-2.8066E-05	2.5329	0.0012253	483.76072655493516	75.406	0.51411	75.406	75.087	75.601	0					25	12	3	0	0	0	0.48084	1	7508	7508		79.451	16.145	1	1424200	+		10428	19775	8552	8562	11275	11275					0.02282945457761798
EYTKKTVTA	9	Unmodified	_EYTKKTVTA_					0	0	0			REV__ENSG00000111642|ENST00000544040|CHD4	REV__ENSG00000111642|ENST00000544040|CHD4	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.7833862304688	2	520.784764	1039.55498	-0.5658	-0.00029466	-2.0942	-0.0010906	-2.66	-0.0013853	520.7835306611641	20.373	0.97506	19.035	18.762	19.737	-1.3386					36	19	3	0	0	0	0.64427	1	78	78		26.693	0	1	135960	+		10429	18041	8553	8563	11276	11276					0.03678019377821329
EYTPRSWNF	9	Unmodified	_EYTPRSWNF_					0	0	0		ENSG00000156671|ENST00000542569|SAMD8	ENSG00000156671|ENST00000542569|SAMD8	ENSG00000156671|ENST00000542569|SAMD8	MULTI-MSMS	OvCa99_classI_Rep5	1	600.2799072265625	2	600.277638	1198.54072	2.3357	0.0014021	-0.00041888	-2.5145E-07	2.3353	0.0014018	600.2776373418068	95.287	1.1348	95.287	95.033	96.168	0					49	26	4	0	0	0	0.11471	1	10387	10387		93.195	39.844	1	4311900			10430	5852	8554	8564	11277	11277					-0.050606330504933794
EYVEKFYRI	9	Unmodified	_EYVEKFYRI_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	OvCa99_classI_Rep5	1	623.828369140625	2	623.826963	1245.63937	1.1455	0.0007146	0.60467	0.00037721	1.7502	0.0010918	623.82736146351	83.167	1.3535	83.167	82.824	84.177	0					87	31	5	0	0	0	0.055627	2	8650	8622;8650		115.49	51.287	1	7172600			10431	2975	8555	8565	11278;11279	11279					0.02637970194564332
EYVFSVSTF	9	Unmodified	_EYVFSVSTF_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	539.7593994140625	2	539.758215	1077.50188	1.492	0.0008053	1.0559	0.00056991	2.5478	0.0013752	539.758483241127	138.45	1.0601	138.45	138.11	139.17	0					58	21	4	0	0	0	0.36502	1	16161	16161		55.504	14.078	1	714950			10432	6293	8556	8566	11280	11280					-0.03377358404873121
EYVKQTWNL	9	Unmodified	_EYVKQTWNL_					0	0	0		nc|ENSG00000165025|P43405-2|SYK;chr9:90802005-90843858|401|12.05|0.67|4.17|+|ENST00000375747|SYK,SYK;ENSG00000165025|ENST00000375754|SYK;SYK|p.L251*|1|0.07|ENSG00000165025|chr9:90864620-90864623|GTTT/-|frameshift_variant	nc|ENSG00000165025|P43405-2|SYK	nc|ENSG00000165025|P43405-2|SYK	MULTI-MSMS	OvCa99_classI_Rep5	1	590.804443359375	2	590.803488	1179.59242	2.9214	0.001726	-0.64963	-0.0003838	2.2718	0.0013422	590.8029615875622	89.535	1.3816	89.535	89.275	90.656	0					67	33	5	0	0	0	0.013607	2	9582	9554;9582		157.33	61.646	1	7026100			10433	558	8557	8567	11281;11282	11282					0.00981110643442662
EYVPGAHQF	9	Unmodified	_EYVPGAHQF_					0	0	0		ENST00000579014.5_1_18:6942080-7042306:-|nuORF;ENSG00000101680|ENST00000389658|LAMA1;ENST00000488089.1_1_18:6955350-6955548:-|nuORF;ENST00000492048.5_1_18:6942080-6955548:-|nuORF	ENST00000579014.5_1_18:6942080-7042306:-|nuORF	ENST00000579014.5_1_18:6942080-7042306:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	524.2504272460938	2	524.248349	1046.48214	0.15277	8.0091E-05	-0.43397	-0.00022751	-0.28119	-0.00014742	524.2479003961221	72.313	0.96901	72.313	71.835	72.804	0					34	23	3	0	0	0	0.42676	1	7045	7045		49.442	5.3247	1	3765900			10434	2196	8558	8568	11283	11283					-0.0392368962495766
EYVRALFDF	9	Unmodified	_EYVRALFDF_					0	0	0		nc|ENSG00000167193|P46108-2|CRK;ENSG00000167193|ENST00000300574|CRK	nc|ENSG00000167193|P46108-2|CRK	nc|ENSG00000167193|P46108-2|CRK	MULTI-MSMS	OvCa99_classI_Rep5	1	580.2892456054688	2	580.292756	1158.57096	1.3004	0.00075462	-2.3443	-0.0013604	-1.0439	-0.00060576	580.2902636425342	127.63	0.95644	127.63	127.27	128.23	0					44	20	4	0	0	0	0.059253	2	14774	14774;14798		113.41	6.9964	1	401010			10435	6768	8559	8569	11284;11285	11284					-0.0019827438529773644
EYYRGFTLF	9	Unmodified	_EYYRGFTLF_					0	0	0		ENST00000569406.5_1_15:74914809-74922221:+|nuORF;ENST00000562078.5_1_15:74917060-74922221:+|nuORF;ENST00000454830.6_1_15:74914310-74922221:+|nuORF;nc|ENSG00000179335|P49761-3|CLK3;ENSG00000179335|ENST00000395066|CLK3	ENST00000569406.5_1_15:74914809-74922221:+|nuORF	ENST00000569406.5_1_15:74914809-74922221:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	598.2928466796875	2	598.292756	1194.57096	1.4151	0.00084664	3.5706	0.0021363	4.9857	0.0029829	598.2947736045697	123.42	0.60119	123.42	123.18	123.79	0					27	12	3	0	0	0	0.1804	1	14224	14224		79.713	22.992	1	382520			10436	7816	8560	8570	11286	11286					-0.018542743852776766
FAADVLDQWS	10	Unmodified	_FAADVLDQWS_					0	0	0		ENSG00000215009|ENST00000399422|ACSM4	ENSG00000215009|ENST00000399422|ACSM4	ENSG00000215009|ENST00000399422|ACSM4	MULTI-MSMS	OvCa99_classI_Rep5	1	576.271728515625	2	576.272021	1150.52949	-1.0616	-0.00061177	0.26898	0.00015501	-0.79262	-0.00045677	576.2720169066247	26.206	2.7952	26.206	25.893	28.688	0					113	55	3	0	0	0	0.69073	1	672	672		31.53	1.0262	1	198310			10437	9196	8561	8571	11287	11287					-0.03975455144609441
FAADVSDLIIG	11	Unmodified	_FAADVSDLIIG_					0	0	0			REV__ENSG00000110169|ENST00000265983|HPX	REV__ENSG00000110169|ENST00000265983|HPX	MULTI-MSMS	OvCa99_classI_Rep5	1	560.7986450195312	2	560.797872	1119.58119	0.29237	0.00016396	0.25922	0.00014537	0.55159	0.00030933	560.7979185456289	23.522	0.30062	23.522	23.397	23.697	0					11	5	3	0	0	0	0.72459	1	343	343		20.947	0.95016	1	52355	+		10438	17974	8562	8572	11288	11288					0.026182885492971764
FAAERSSRL	9	Unmodified	_FAAERSSRL_					0	0	0			REV__ENSG00000134245|ENST00000369684|WNT2B	REV__ENSG00000134245|ENST00000369684|WNT2B	MULTI-MSMS	OvCa9_classI_Rep2	2	518.7803344726562	2	518.780348	1035.54614	1.0108	0.00052437	-1.3327	-0.00069137	-0.32192	-0.000167	518.7794953787475	41.419	1.2817	38.709	38.438	39.72	-2.7097					65	25	4	0	0	0	0.56889	1	2159	2159		35.618	6.4687	1	331240	+		10439	19185	8563	8573	11289	11289					0.029790905319941885
FAAFVGVALL	10	Unmodified	_FAAFVGVALL_					0	0	0		tr|A0A553SPU2|A0A553SPU2_NIACIL-cystineuptakeproteinTcyPOS=NialliacirculansOX=1397GN=CEQ21_09270PE=3SV=1	tr|A0A553SPU2|A0A553SPU2_NIACIL-cystineuptakeproteinTcyPOS=NialliacirculansOX=1397GN=CEQ21_09270PE=3SV=1	tr|A0A553SPU2|A0A553SPU2_NIACIL-cystineuptakeproteinTcyPOS=NialliacirculansOX=1397GN=CEQ21_09270PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	504.29791259765625	2	504.299853	1006.58515	-0.082287	-4.1497E-05	-4.349	-0.0021932	-4.4313	-0.0022347	504.2976378271559	104.41	3.9037	102.97	102.5	106.4	-1.4347					184	75	5	0	0	0	0.65806	1	7334	7334		35.201	4.6971	1	927760			10440	34086	8564	8574	11290	11290					0.08212422833662458
FAAGQFGKT	9	Unmodified	_FAAGQFGKT_					0	0	0			REV__tr|A0A553SMN2|A0A553SMN2_NIACIRibonucleaseHOS=NialliacirculansOX=1397GN=CEQ21_22765PE=3SV=1	REV__tr|A0A553SMN2|A0A553SMN2_NIACIRibonucleaseHOS=NialliacirculansOX=1397GN=CEQ21_22765PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	463.797607421875	2	463.74016	925.465767	0.34091	0.00015809	-1.0709	-0.00049661	-0.72996	-0.00033851	463.7392754354103	70.754	0.25777	68.034	67.905	68.163	-2.7196					6	4	2	0	0	0	0.027433	1	3263	3263		54.776	16.965	1	11553	+		10441	30351	8565	8575	11291	11291					5.229208954915521E-05
FAALWLTIL	9	Unmodified	_FAALWLTIL_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;GBF1|p.L1808Tfs*50|1|0.12|ENSG00000107862|chr10:102382171-102382172|-/C|frameshift_variant;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MSMS	OvCa9_classI_Rep2	2	524.3150024414062	2	524.315503	1046.61645	-0.54782	-0.00028723	-2.0397	-0.0010695	-2.5876	-0.0013567	524.3144059068588	121.52	1.6813	121.32	120.8	122.48	-0.19718					79	33	4	0	0	0	0.36502	1	11776	11776		55.504	6.0627	1	278140			10442	2621	8566	8576	11292	11292					0.09500995867756501
FACHVFVSED	10	Unmodified	_FACHVFVSED_					0	0	0		ENSG00000121653|ENST00000241014|MAPK8IP1	ENSG00000121653|ENST00000241014|MAPK8IP1	ENSG00000121653|ENST00000241014|MAPK8IP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.2582397460938	2	577.252774	1152.491	1.4195	0.00081943	-0.80551	-0.00046498	0.61403	0.00035445	577.2513775253816	138.14	0.33691	138.14	137.97	138.31	0					10	6	2	0	0	0	0.026871	1	16113	16113		45.952	20.378	1	51819			10443	3492	8567	8577	11293	11293					-0.07915084050796395
FADKFPKT	8	Unmodified	_FADKFPKT_					0	0	0		ENST00000567559.1_1_16:77926320-77926647:+|nuORF;ENST00000462517.1_1_3:57927592-57927931:+|nuORF;ENST00000441944.2_1_9:7597894-7598236:+|nuORF;ENST00000583752.1_1_17:38524217-38524595:+|nuORF;ENST00000452411.1_1_7:98083525-98083918:-|nuORF;ENST00000585753.1_1_19:30412142-30412556:+|nuORF;ENST00000440938.1_1_2:174350595-174351021:-|nuORF;ENST00000527147.1_1_11:100537243-100537690:+|nuORF	ENST00000567559.1_1_16:77926320-77926647:+|nuORF;ENST00000527147.1_1_11:100537243-100537690:+|nuORF	ENST00000567559.1_1_16:77926320-77926647:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.28564453125	2	477.258185	952.501818	0.22567	0.0001077	-4.104	-0.0019587	-3.8783	-0.0018509	477.25604426128314	58.99	1.64	55.598	54.902	56.542	-3.392					56	32	2	0	0	0	0.028476	1	3951	3951		39.253	5.0803	1	99097			10444	11934;13227	8568	8578	11294	11294					0.02366686385801131
FADWNKGEL	9	Unmodified	_FADWNKGEL_					0	0	0		tr|A0A553SKZ3|A0A553SKZ3_NIACI6-phosphogluconatedehydrogenase,decarboxylatingOS=NialliacirculansOX=1397GN=gndAPE=3SV=1	tr|A0A553SKZ3|A0A553SKZ3_NIACI6-phosphogluconatedehydrogenase,decarboxylatingOS=NialliacirculansOX=1397GN=gndAPE=3SV=1	tr|A0A553SKZ3|A0A553SKZ3_NIACI6-phosphogluconatedehydrogenase,decarboxylatingOS=NialliacirculansOX=1397GN=gndAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.7984008789062	2	540.261456	1078.50836	1.0669	0.00057642	1.4497	0.00078324	2.5167	0.0013597	540.2621001654494	83.285	0.55515	83.285	82.949	83.504	0					20	12	3	0	0	0	0.027418	1	8636	8636		58.782	9.3404	1	339650			10445	33669	8569	8579	11295	11295					-0.027754204534630844
FADWNKGEL	9	Unmodified	_FADWNKGEL_					0	0	0		tr|A0A553SKZ3|A0A553SKZ3_NIACI6-phosphogluconatedehydrogenase,decarboxylatingOS=NialliacirculansOX=1397GN=gndAPE=3SV=1	tr|A0A553SKZ3|A0A553SKZ3_NIACI6-phosphogluconatedehydrogenase,decarboxylatingOS=NialliacirculansOX=1397GN=gndAPE=3SV=1	tr|A0A553SKZ3|A0A553SKZ3_NIACI6-phosphogluconatedehydrogenase,decarboxylatingOS=NialliacirculansOX=1397GN=gndAPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	540.261456	1078.50836	-0.41845	-0.00022607	0.66472	0.00035912	0.24628	0.00013305	540.2621050605585	85.48	0.50156	83.26	83.084	83.586	-2.2204	-0.11033	0.0011456	NaN	58.782	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18932			10446	33669	8569	8579							-0.027754204534630844
FADWNKGEL	9	Unmodified	_FADWNKGEL_					0	0	0		tr|A0A553SKZ3|A0A553SKZ3_NIACI6-phosphogluconatedehydrogenase,decarboxylatingOS=NialliacirculansOX=1397GN=gndAPE=3SV=1	tr|A0A553SKZ3|A0A553SKZ3_NIACI6-phosphogluconatedehydrogenase,decarboxylatingOS=NialliacirculansOX=1397GN=gndAPE=3SV=1	tr|A0A553SKZ3|A0A553SKZ3_NIACI6-phosphogluconatedehydrogenase,decarboxylatingOS=NialliacirculansOX=1397GN=gndAPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	540.261456	1078.50836	0.59639	0.00032221	-2.6332	-0.0014226	-2.0368	-0.0011004	540.2599216398893	86.212	0.34946	83.566	83.394	83.743	-2.6463	0.19588	-0.0024179	NaN	58.782	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9702.2			10447	33669	8569	8579							-0.027754204534630844
FAEDGARTV	9	Unmodified	_FAEDGARTV_					0	0	0		ENSG00000157240|ENST00000287934|FZD1	ENSG00000157240|ENST00000287934|FZD1	ENSG00000157240|ENST00000287934|FZD1	MULTI-MSMS	OvCa99_classI_Rep5	1	483.2393798828125	2	483.237981	964.461409	-0.44033	-0.00021278	0.05867	2.8351E-05	-0.38166	-0.00018443	483.2379810644387	51.694	1.882	51.694	51.332	53.214	0					120	43	4	0	0	0	0.040625	2	3992	3992;4018		126.24	35.873	1	23841000			10448	5886	8570	8580	11296;11297	11296					-0.022242800046115008
FAEFLLPLL	9	Unmodified	_FAEFLLPLL_					0	0	0		nc|ENSG00000155229|Q96T76-8|MMS19;nc|ENSG00000155229|Q96T76-7|MMS19;nc|ENSG00000155229|Q96T76-5|MMS19;MMS19|p.M948*|1|0.08|ENSG00000155229|chr10:97459424-97459424|T/-|frameshift_variant;nc|ENSG00000155229|Q96T76-9|MMS19;ENSG00000155229|ENST00000438925|MMS19	nc|ENSG00000155229|Q96T76-8|MMS19	nc|ENSG00000155229|Q96T76-8|MMS19	MSMS	OvCa9_classI_Rep4_	4	531.815673828125	2	531.815336	1061.61612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.49	1	134.95	134.45	135.45	-1.5437								0	0	0	0.21446	1	13243	13243		24.203	3.7209	1				10449	15110	8571	8581	11298	11298					0.08777576147895161
FAEGFVRAL	9	Unmodified	_FAEGFVRAL_					0	0	0		ENSG00000177606|ENST00000371222|JUN	ENSG00000177606|ENST00000371222|JUN	ENSG00000177606|ENST00000371222|JUN	MULTI-MSMS	OvCa99_classI_Rep5	1	505.27886962890625	2	505.276909	1008.53927	-0.43352	-0.00021905	-0.19781	-9.9948E-05	-0.63132	-0.00031899	505.2766624275136	104.71	1.0782	104.71	104.36	105.44	0					71	24	4	0	0	0	0.03923	1	11737	11737		127.46	50.144	1	3180500			10450	7699	8572	8582	11299	11299					0.03533777651421133
FAEGQGRAL	9	Unmodified	_FAEGQGRAL_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	OvCa99_classI_Rep5	1	474.750244140625	2	474.748516	947.482479	-0.61068	-0.00028992	0.47658	0.00022626	-0.1341	-6.3662E-05	474.74866881070096	53.451	1.2473	53.451	53.131	54.378	0					69	29	4	0	0	0	0.049969	2	4240	4240;4265		118.74	44.488	1	8855800			10451	2309	8573	8583	11300;11301	11300					0.006637300948909797
FAEHQSSDL	9	Unmodified	_FAEHQSSDL_					0	0	0			REV__ENSG00000085999|ENST00000371975|RAD54L	REV__ENSG00000085999|ENST00000371975|RAD54L	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.25146484375	2	517.232896	1032.45124	2.1926	0.0011341	-0.15068	-7.7938E-05	2.042	0.0010562	517.7358464542135	75.943	0.31143	75.943	75.764	76.076	0					12	7	2	0	0	0	0.027462	1	7600	7600		20.947	7.9877	1	387180	+		10452	17144	8574	8584	11302	11302					-0.06368887729854578
FAELLPNAQII	11	Unmodified	_FAELLPNAQII_					0	0	0			REV__MYH13|p.Q1539Hfs*44|1|0.11|ENSG00000006788|chr17:10311142-10311143|-/G|frameshift_variant;REV__MYH13|p.N751Lfs*37|1|0.1|ENSG00000006788|chr17:10332146-10332147|-/GAAGTATGTGCAG|frameshift_variant	REV__MYH13|p.Q1539Hfs*44|1|0.11|ENSG00000006788|chr17:10311142-10311143|-/G|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	614.3233032226562	2	614.850438	1227.68632	-0.55796	-0.00034306	-2.329	-0.001432	-2.8869	-0.001775	614.8486472924876	66.334	0.40092	66.334	66.174	66.575	0					11	9	2	0	0	0	0.025406	1	6175	6175		54.722	0	1	105420	+		10453	16425;28687	8575	8585	11303	11303					0.08158829745707408
FAELLPNAQII	11	Unmodified	_FAELLPNAQII_					0	0	0			REV__MYH13|p.Q1539Hfs*44|1|0.11|ENSG00000006788|chr17:10311142-10311143|-/G|frameshift_variant;REV__MYH13|p.N751Lfs*37|1|0.1|ENSG00000006788|chr17:10332146-10332147|-/GAAGTATGTGCAG|frameshift_variant	REV__MYH13|p.Q1539Hfs*44|1|0.11|ENSG00000006788|chr17:10311142-10311143|-/G|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	614.850438	1227.68632	-0.54312	-0.00033394	-4.9947	-0.003071	-5.5378	-0.0034049	614.847535008276	70.145	0.54199	66.663	66.49	67.032	-3.4812	0.16493	-0.0014172	NaN	54.722	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41714	+		10454	16425;28687	8575	8585							0.08158829745707408
FAERAFLN	8	Unmodified	_FAERAFLN_					0	0	0		tr|A0A553SKA2|A0A553SKA2_NIACIPorphobilinogendeaminaseOS=NialliacirculansOX=1397GN=hemCPE=3SV=1	tr|A0A553SKA2|A0A553SKA2_NIACIPorphobilinogendeaminaseOS=NialliacirculansOX=1397GN=hemCPE=3SV=1	tr|A0A553SKA2|A0A553SKA2_NIACIPorphobilinogendeaminaseOS=NialliacirculansOX=1397GN=hemCPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.28155517578125	2	484.253434	966.492316	1.2001	0.00058114	-1.923	-0.00093124	-0.72296	-0.00035009	484.25246897251884	86.335	1.4868	83.697	83.352	84.838	-2.6384					57	29	4	0	0	0	0.028476	1	7347	7347		55.504	14.932	1	526820			10455	33594	8576	8586	11304	11304					0.007729181002673613
FAFGLFGVFL	10	Unmodified	_FAFGLFGVFL_					0	0	0		nc|ENSG00000274391|P56180-3|TPTE;nc|ENSG00000274391|P56180-2|TPTE;ENSG00000274391|ENST00000618007|TPTE;ENST00000381646.6_1_22:38757402-38776397:-|nuORF	nc|ENSG00000274391|P56180-3|TPTE	nc|ENSG00000274391|P56180-3|TPTE	MULTI-MSMS	OvCa99_classI_Rep5	1	559.310791015625	2	559.307678	1116.6008	1.1239	0.00062863	0.41529	0.00023227	1.5392	0.0008609	559.3078395548317	67.119	0.6678	67.119	66.898	67.566	0					47	16	4	0	0	0	0.65806	1	6289	6289		35.201	0	1	5363800			10456	9564	8577	8587	11305	11305					0.047167093507141544
FAFKKKKVR	9	Unmodified	_FAFKKKKVR_					0	0	0		chr20:49135931-49143854|113|13.45|0.47|4.83|-|0|TE_info:Looper,Looper_dup505,PiggyBac,DNA,donor,-,49143854,49145139|STAU1,None|19	chr20:49135931-49143854|113|13.45|0.47|4.83|-|0|TE_info:Looper,Looper_dup505,PiggyBac,DNA,donor,-,49143854,49145139|STAU1,None|19	chr20:49135931-49143854|113|13.45|0.47|4.83|-|0|TE_info:Looper,Looper_dup505,PiggyBac,DNA,donor,-,49143854,49145139|STAU1,None|19	MULTI-MSMS	OvCa9_classI_Rep2	2	576.3712768554688	2	576.374218	1150.73388	-1.8269	-0.001053	-1.8941	-0.0010917	-3.721	-0.0021447	576.3730150957791	53.322	1.3909	50.508	50.182	51.573	-2.8139					65	27	4	0	0	0	0.69895	1	3612	3612		18.324	0.062328	1	195240			10457	455	8578	8588	11306	11306					0.16454573527221328
FAFRQAINK	9	Unmodified	_FAFRQAINK_					0	0	0		ABL1|p.E1085Q|1|0.43|ENSG00000097007|chr9:130885543-130885543|G/C|missense_variant	ABL1|p.E1085Q|1|0.43|ENSG00000097007|chr9:130885543-130885543|G/C|missense_variant	ABL1|p.E1085Q|1|0.43|ENSG00000097007|chr9:130885543-130885543|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	547.8077392578125	2	547.808908	1093.60326	-0.63286	-0.00034669	0.48114	0.00026357	-0.15173	-8.3117E-05	547.8089203979869	48.592	1.4896	45.831	45.28	46.769	-2.7603					73	29	4	0	0	0	0.61208	1	3036	3036		30.504	1.3541	1	224700			10458	11	8579	8589	11307	11307					0.06020557808369631
FAFRRLNHRRL	11	Unmodified	_FAFRRLNHRRL_					0	0	0			REV__tr|A0A553SMH4|A0A553SMH4_NIACIPeptidaseOS=NialliacirculansOX=1397GN=CEQ21_22570PE=4SV=1	REV__tr|A0A553SMH4|A0A553SMH4_NIACIPeptidaseOS=NialliacirculansOX=1397GN=CEQ21_22570PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	495.9576721191406	3	495.960249	1484.85892	-4.8163	-0.0023887	1.6051	0.00079608	-3.2112	-0.0015926	495.96094978154576	162.14	1.4092	161.91	160.94	162.35	-0.22696					77	27	3	0	0	0	0.72545	1	16539	16539		9.6461	0.43434	1	83644	+		10459	30330	8580	8590	11308	11308					0.13588258716299606
FAFRTALGA	9	Unmodified	_FAFRTALGA_					0	0	0			REV__ENST00000418411.6_1_12:113540888-113573291:-|nuORF	REV__ENST00000418411.6_1_12:113540888-113573291:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	477.8091125488281	2	477.263802	952.513051	2.1169	0.0010103	2.0355	0.00097148	4.1524	0.0019818	477.2647266353381	125.95	1.6693	124.9	124.26	125.93	-1.0519					55	31	3	0	0	0	0.027426	1	9809	9809		44.117	0	1	66127	+		10460	18030	8581	8591	11309	11309					0.0348950847994729
FAFTNIVLK	9	Unmodified	_FAFTNIVLK_					0	0	0		tr|A0A553SFG6|A0A553SFG6_NIACIDUF2294domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_08740PE=4SV=1	tr|A0A553SFG6|A0A553SFG6_NIACIDUF2294domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_08740PE=4SV=1	tr|A0A553SFG6|A0A553SFG6_NIACIDUF2294domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_08740PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.8173217773438	2	526.810585	1051.60662	-0.31846	-0.00016777	3.3181	0.001748	2.9996	0.0015802	526.8122764896997	93.466	0.98824	92.298	91.953	92.942	-1.168					59	18	4	0	0	0	0.027462	1	8304	8304		45.952	1.8352	1	166860			10461	33037	8582	8592	11310	11310					0.08287807862370755
FAFYNEAVAL	10	Unmodified	_FAFYNEAVAL_					0	0	0		tr|A0A553SHQ7|A0A553SHQ7_NIACIGlucosedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_13440PE=4SV=1	tr|A0A553SHQ7|A0A553SHQ7_NIACIGlucosedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_13440PE=4SV=1	tr|A0A553SHQ7|A0A553SHQ7_NIACIGlucosedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_13440PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	572.7861328125	2	572.787307	1143.56006	-0.72165	-0.00041335	-3.4146	-0.0019558	-4.1362	-0.0023692	572.7852042394844	102.79	2.8693	101.27	100.58	103.45	-1.5211					127	54	3	0	0	0	0.28422	1	7087	7087		82.75	0.50997	1	1330700			10462	33298	8583	8593	11311	11311					-0.005976767595711863
FAGHVVKR	8	Unmodified	_FAGHVVKR_					0	0	0		tr|A0A7D6VUB0|A0A7D6VUB0_9CLOTSulfide/dihydroorotatedehydrogenase-likeFAD/NAD-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10925PE=4SV=1	tr|A0A7D6VUB0|A0A7D6VUB0_9CLOTSulfide/dihydroorotatedehydrogenase-likeFAD/NAD-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10925PE=4SV=1	tr|A0A7D6VUB0|A0A7D6VUB0_9CLOTSulfide/dihydroorotatedehydrogenase-likeFAD/NAD-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10925PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	458.2306213378906	2	457.271961	912.52937	4.6078	0.002107	3.4116	0.00156	8.0194	0.003667	457.2733527003822	25.113	0.60908	22.404	22.29	22.899	-2.7097					17	12	2	0	0	0	0.028476	1	233	233		15.636	2.677	1	38580			10463	35174	8584	8594	11312	11312					0.06960634436711644
FAGIFKFK	8	Unmodified	_FAGIFKFK_					0	0	0		tr|A0A553STF0|A0A553STF0_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_04925PE=4SV=1	tr|A0A553STF0|A0A553STF0_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_04925PE=4SV=1	tr|A0A553STF0|A0A553STF0_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_04925PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	479.28314208984375	2	479.281463	956.548374	-0.053595	-2.5687E-05	3.3429	0.0016022	3.2893	0.0015765	479.2829225155365	22.722	0.27974	22.722	22.574	22.854	0					13	6	3	0	0	0	0.69415	1	243	243		44.531	3.7529	1	104710			10464	34481	8585	8595	11313	11313					0.0683617100775109
FAGIGTNPND	10	Unmodified	_FAGIGTNPND_					0	0	0			REV__ENSG00000271601|ENST00000604000|LIX1L	REV__ENSG00000271601|ENST00000604000|LIX1L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.7496643066406	2	503.235439	1004.45632	-0.16491	-8.2986E-05	-0.58483	-0.00029431	-0.74973	-0.00037729	503.23495822097107	60.451	0.59631	57.021	56.799	57.395	-3.43					17	11	2	0	0	0	0.026802	1	4073	4073		26.693	0	1	62226	+		10465	23611	8586	8596	11314	11314					-0.04572583867252433
FAGLAFIVGL	10	Unmodified	_FAGLAFIVGL_					0	0	0		nc|ENSG00000137731|P54710-2|FXYD2;ENSG00000137731|ENST00000292079|FXYD2;ENST00000534383.5_1_11:117691389-117694973:-|nuORF;ENST00000317594.6_1_11:117693022-117695420:-|nuORF	nc|ENSG00000137731|P54710-2|FXYD2	nc|ENSG00000137731|P54710-2|FXYD2	MULTI-MSMS	OvCa9_classI_Rep2	2	504.2972106933594	2	504.299853	1006.58515	-1.2162	-0.00061332	-3.1624	-0.0015948	-4.3786	-0.0022081	504.29821756982153	103.35	3.6196	102.66	102.28	105.9	-0.68459					195	72	4	0	0	0	0.5794	1	9521	9521		44.531	2.1349	1	812500			10466	4609	8587	8597	11315	11315					0.08212422833685196
FAGLAFIVGL	10	Unmodified	_FAGLAFIVGL_					0	0	0		nc|ENSG00000137731|P54710-2|FXYD2;ENSG00000137731|ENST00000292079|FXYD2;ENST00000534383.5_1_11:117691389-117694973:-|nuORF;ENST00000317594.6_1_11:117693022-117695420:-|nuORF	nc|ENSG00000137731|P54710-2|FXYD2	nc|ENSG00000137731|P54710-2|FXYD2	MULTI-MSMS	OvCa9_classI_Rep3	3	504.2976989746094	2	504.299853	1006.58515	-0.082287	-4.1497E-05	-4.349	-0.0021932	-4.4313	-0.0022347	504.2976378271559	104.41	3.9037	102.97	102.5	106.4	-1.4347					184	75	5	0	0	0	0.5794	1	7316	7316		44.531	8.9128	1	927760			10467	4609	8587	8597	11316	11316					0.08212422833685196
FAGPHSTL	8	Unmodified	_FAGPHSTL_					0	0	0		ENSG00000106266|ENST00000222990|SNX8;ENST00000480807.1_1_7:2294693-2297236:-|nuORF	ENSG00000106266|ENST00000222990|SNX8	ENSG00000106266|ENST00000222990|SNX8	MULTI-MSMS	OvCa99_classI_Rep5	1	415.2152404785156	2	415.213778	828.413003	0.64134	0.00026629	-0.10957	-4.5496E-05	0.53177	0.0002208	415.21359451954334	58.508	0.82005	58.508	58.112	58.932	0					38	19	3	0	0	0	0.20265	1	4976	4976		124.32	37.389	1	1789200			10468	2538	8588	8598	11317	11317					-0.008067288538541106
FAHLLQPIR	9	Unmodified	_FAHLLQPIR_					0	0	0		nc|ENSG00000025770|Q6IBW4-2|NCAPH2;ENSG00000025770|ENST00000420993|NCAPH2;nc|ENSG00000025770|Q6IBW4-4|NCAPH2;NCAPH2|p.P186Ifs*81|1|0.31|ENSG00000025770|chr22:50518186-50518187|-/CA|frameshift_variant;nc|ENSG00000025770|Q6IBW4-5|NCAPH2	nc|ENSG00000025770|Q6IBW4-2|NCAPH2	nc|ENSG00000025770|Q6IBW4-2|NCAPH2	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.8267211914062	2	547.827101	1093.63965	-4.8131	-0.0026367	3.5	0.0019174	-1.3131	-0.00071934	547.8288597088392	154.99	1.902	153.5	152.83	154.73	-1.4911					109	49	3	0	0	0	0.65476	1	15363	15363		25.45	3.4903	1	64964			10469	1048	8589	8599	11318	11318					0.09657434705081869
FAHLNSPQL	9	Unmodified	_FAHLNSPQL_					0	0	0		ENST00000536072.6_1_16:67909906-67914140:+|nuORF;ENSG00000038358|ENST00000358933|EDC4;EDC4|p.M382Ifs*24|1|0.26|ENSG00000038358|chr16:67878592-67878593|-/TA|frameshift_variant;ENST00000572221.5_1_16:67909733-67911757:+|nuORF	ENST00000536072.6_1_16:67909906-67914140:+|nuORF	ENST00000536072.6_1_16:67909906-67914140:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	513.7725219726562	2	513.771991	1025.52943	1.4273	0.0007333	0.34844	0.00017902	1.7757	0.00091232	513.7722744768968	83.681	0.63138	83.681	83.419	84.051	0					37	14	4	0	0	0	0.3076	1	8719	8719		62.107	8.756	1	999220			10470	1097	8590	8600	11319	11319					0.017685896460534423
FAHLPLKCC	9	Unmodified	_FAHLPLKCC_					0	0	0			REV__ENSG00000180044|ENST00000326474|C3orf80	REV__ENSG00000180044|ENST00000326474|C3orf80	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.3082885742188	2	516.26189	1030.50923	-0.80285	-0.00041448	-0.52238	-0.00026968	-1.3252	-0.00068417	516.2613331650292	144.43	0.73711	143	142.73	143.46	-1.4357					31	13	3	0	0	0	0.027462	1	14153	14153		19.36	0	1	58071	+		10471	22155	8591	8601	11320	11320					-0.004806206097782706
FAHYEQQMR	9	Unmodified	_FAHYEQQMR_					0	0	0			REV__ENST00000587651.1_1_17:58296950-58303472:-|nuORF	REV__ENST00000587651.1_1_17:58296950-58303472:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	605.8709106445312	2	605.277115	1208.53968	-4.8439	-0.0029319	3.8189	0.0023115	-1.025	-0.00062039	605.2792582391183	157.69	0.51314	156.14	155.93	156.44	-1.545					16	11	2	0	0	0	0.027462	1	15587	15587		27.882	9.6202	1	19490	+		10472	27879	8592	8602	11321	11321					-0.05625170691041603
FAIDPHLLLSV	11	Unmodified	_FAIDPHLLLSV_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	OvCa99_classI_Rep5	1	612.8560180664062	2	612.852981	1223.69141	0.85448	0.00052367	2.0951	0.001284	2.9496	0.0018077	612.8540838477628	152.04	1.8465	152.04	151.65	153.5	0					69	41	3	0	0	0	0.0091518	4	17808	17784;17808;17826;17834		162.25	66.062	1	1413700			10473	3504	8593	8603	11322;11323;11324;11325	11323					0.08851133608322925
FAIFILVCI	9	Unmodified	_FAIFILVCI_					0	0	0		ADCY2|p.N875Tfs*35|1|0.17|ENSG00000078295|chr5:7789793-7789794|-/AACTAATTTAC|frameshift_variant;ENSG00000078295|ENST00000338316|ADCY2	ADCY2|p.N875Tfs*35|1|0.17|ENSG00000078295|chr5:7789793-7789794|-/AACTAATTTAC|frameshift_variant	ADCY2|p.N875Tfs*35|1|0.17|ENSG00000078295|chr5:7789793-7789794|-/AACTAATTTAC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.7810668945312	2	519.806457	1037.59836	0.26394	0.0001372	-3.4654	-0.0018013	-3.2014	-0.0016641	519.8034902055873	141.61	0.49805	141.61	141.39	141.88	0					12	9	2	0	0	0	0.02744	1	16545	16545		60.404	11.193	1	31864			10474	33	8594	8604	11326	11326					0.08106537621415555
FAIIVSTT	8	Unmodified	_FAIIVSTT_					0	0	0			REV__ENSG00000257594|ENST00000529983|GALNT4	REV__ENSG00000257594|ENST00000529983|GALNT4	MULTI-MSMS	OvCa9_classI_Rep2	2	426.2457275390625	2	426.247286	850.48002	-0.93249	-0.00039747	-2.0488	-0.0008733	-2.9813	-0.0012708	426.2463036759244	138.33	1.7168	138.1	137.59	139.3	-0.22696					83	34	3	0	0	0	0.75724	1	13769	13769		23.037	3.6767	1	161940	+		10475	23547	8595	8605	11327	11327					0.04879881637236849
FAIIVSTT	8	Unmodified	_FAIIVSTT_					0	0	0			REV__ENSG00000257594|ENST00000529983|GALNT4	REV__ENSG00000257594|ENST00000529983|GALNT4	MULTI-MSMS	OvCa9_classI_Rep3	3	426.2453308105469	2	426.247286	850.48002	-1.1759	-0.00050123	-1.8651	-0.00079498	-3.041	-0.0012962	426.2464135300909	139.12	1.5749	138.06	137.54	139.11	-1.0595					80	31	4	0	0	0	0.75991	1	11394	11394		21.702	1.2205	1	422340	+		10476	23547	8595	8605	11328	11328					0.04879881637236849
FAIPIKIPI	9	Unmodified	_FAIPIKIPI_					0	0	0			REV__L1MB7_dup1945|chr2:26113582-26114608:+|1.9674544307732185|0.2937903993333884|2.74|429.0|31|3|sense	REV__L1MB7_dup1945|chr2:26113582-26114608:+|1.9674544307732185|0.2937903993333884|2.74|429.0|31|3|sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.8117980957031	2	506.333696	1010.65284	-1.0208	-0.00051689	0.96369	0.00048795	-0.057156	-2.894E-05	506.3358074787592	89.645	0.61034	87.565	87.239	87.85	-2.0805					16	11	3	0	0	0	0.027462	1	5536	5536		25.45	0	1	16059	+		10477	28419	8596	8606	11329	11329					0.14793872764460048
FAIRYPLLV	9	Unmodified	_FAIRYPLLV_					0	0	0		GPR55|p.L121F|1|0.28|ENSG00000135898|chr2:230910600-230910600|C/A|missense_variant	GPR55|p.L121F|1|0.28|ENSG00000135898|chr2:230910600-230910600|C/A|missense_variant	GPR55|p.L121F|1|0.28|ENSG00000135898|chr2:230910600-230910600|C/A|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	546.3355712890625	2	546.334227	1090.6539	0.64385	0.00035176	2.3032	0.0012583	2.947	0.0016101	546.3354472939371	141.74	0.59918	141.74	141.44	142.04	0					27	11	3	0	0	0	0.53957	1	16548	16548		38.806	3.6054	1	133740			10478	14352	8597	8607	11330	11330					0.11220087133347079
FAISILQQL	9	Unmodified	_FAISILQQL_					0	0	0		ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000485101.5_1_3:186502728-186502902:+|nuORF;ENST00000465032.5_1_3:186501384-186502902:+|nuORF;ENST00000465267.5_1_3:186501384-186502902:+|nuORF	ENSG00000156976|ENST00000323963|EIF4A2	ENSG00000156976|ENST00000323963|EIF4A2	MULTI-MSMS	OvCa99_classI_Rep5	1	516.80859375	2	516.808042	1031.60153	0.52109	0.0002693	1.2736	0.00065819	1.7947	0.00092749	516.8085760359679	158.4	2.0041	158.4	158.05	160.06	0					83	41	4	0	0	0	0.0073837	1	18565	18565		191.63	0	1	718910			10479	5867	8598	8608	11331	11331					0.08699503999764602
FAIVVGIIPL	10	Unmodified	_FAIVVGIIPL_					0	0	0			REV__tr|A0A553SI80|A0A553SI80_NIACIATPsynthasesubunitcOS=NialliacirculansOX=1397GN=atpEPE=3SV=1	REV__tr|A0A553SI80|A0A553SI80_NIACIATPsynthasesubunitcOS=NialliacirculansOX=1397GN=atpEPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.8138427734375	2	521.338978	1040.6634	-0.38245	-0.00019938	2.4574	0.0012811	2.075	0.0010818	521.8408942675434	69.109	0.68884	65.619	64.965	65.654	-3.4902					17	13	2	0	0	0	0.026839	1	5150	5150		19.36	2.8868	1	15365	+		10480	29869	8599	8609	11332	11332					0.14469855418929
FAKDSFPLL	9	Unmodified	_FAKDSFPLL_					0	0	0			REV__tr|A0A553SQS5|A0A553SQS5_NIACIMetal-dependenthydrolaseOS=NialliacirculansOX=1397GN=CEQ21_07225PE=4SV=1	REV__tr|A0A553SQS5|A0A553SQS5_NIACIMetal-dependenthydrolaseOS=NialliacirculansOX=1397GN=CEQ21_07225PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	519.2893676757812	2	519.286943	1036.55933	0.15399	7.9965E-05	1.1098	0.0005763	1.2638	0.00065626	519.2873958557343	160.52	0.55249	160.52	160.26	160.81	0					27	10	3	0	0	0	0.13482	1	18816	18816		87.754	8.3033	1	256920	+		10481	30657	8600	8610	11333	11333					0.042515285913850676
FAKFIDDITI	10	Unmodified	_FAKFIDDITI_					0	0	0		tr|A0A7D6ZZ54|A0A7D6ZZ54_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_04750PE=4SV=1	tr|A0A7D6ZZ54|A0A7D6ZZ54_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_04750PE=4SV=1	tr|A0A7D6ZZ54|A0A7D6ZZ54_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_04750PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	592.81005859375	2	591.823889	1181.63323	2.1402	0.0012667	-0.51979	-0.00030763	1.6205	0.00095902	591.8227295782094	118.13	0.60461	118.13	117.93	118.53	0					20	12	2	0	0	0	0.026802	1	13578	13578		42.396	1.618	1	352840			10482	35945	8601	8611	11334	11334					0.04967451963034364
FAKLNECPL	9	Unmodified	_FAKLNECPL_					0	0	0		ENSG00000013503|ENST00000228347|POLR3B;nc|ENSG00000013503|Q9NW08-2|POLR3B;POLR3B|p.L708Tfs*13|1|0.06|ENSG00000013503|chr12:106454510-106454511|-/GATACAACCAGCGAAACAGAATT|frameshift_variant	ENSG00000013503|ENST00000228347|POLR3B	ENSG00000013503|ENST00000228347|POLR3B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.282470703125	2	517.770603	1033.52665	0.714	0.00036969	1.5556	0.00080542	2.2696	0.0011751	517.7712623841732	67.374	0.69393	63.884	63.541	64.235	-3.4902					22	13	3	0	0	0	0.02741	1	4963	4963		71.296	15.791	1	195610			10483	987	8602	8612	11335	11335					0.011229981968654101
FALAALVQVN	10	Unmodified	_FALAALVQVN_					0	0	0		ENSG00000187824|ENST00000341871|TMEM220	ENSG00000187824|ENST00000341871|TMEM220	ENSG00000187824|ENST00000341871|TMEM220	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3037719726562	2	523.305667	1044.59678	-2.1227	-0.0011108	-1.8084	-0.00094634	-3.9311	-0.0020572	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.71192	1	11526	11526		29.15	2.4566	1	183010			10484	8437	8603	8613	11336	11336					0.0762661985700106
FALEYYYN	8	Unmodified	_FALEYYYN_					0	0	0		tr|A0A7D6VXR0|A0A7D6VXR0_9CLOTSerine/threonineproteinphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_12940PE=4SV=1	tr|A0A7D6VXR0|A0A7D6VXR0_9CLOTSerine/threonineproteinphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_12940PE=4SV=1	tr|A0A7D6VXR0|A0A7D6VXR0_9CLOTSerine/threonineproteinphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_12940PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.7843017578125	2	541.745108	1081.47566	-0.62575	-0.000339	2.6667	0.0014446	2.0409	0.0011057	541.7462767278056	96.273	0.40883	93.848	93.709	94.118	-2.4256					13	7	2	0	0	0	0.028476	1	8511	8511		45.952	11.779	1	22899			10485	35298	8604	8614	11337	11337					-0.06181627576347637
FALGLALGTTI	11	Unmodified	_FALGLALGTTI_					0	0	0		nc|ENSG00000023041|Q9H6R6-2|ZDHHC6;ENSG00000023041|ENST00000369405|ZDHHC6	nc|ENSG00000023041|Q9H6R6-2|ZDHHC6	nc|ENSG00000023041|Q9H6R6-2|ZDHHC6	MULTI-MSMS	OvCa99_classI_Rep5	1	539.3256225585938	2	538.82115	1075.62775	0.98933	0.00053307	1.023	0.00055119	2.0123	0.0010843	539.3232025782999	156.41	3.6435	156.41	155.73	159.38	0					185	73	4	0	0	0	0.54764	1	18381	18381		49.442	5.3247	1	206920			10486	1034	8605	8615	11338	11338					0.09295773171243127
FALGVIVFGL	10	Unmodified	_FALGVIVFGL_					0	0	0			REV__ENST00000475946.5_1_6:7181754-7181826:+|nuORF	REV__ENST00000475946.5_1_6:7181754-7181826:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.3184204101562	2	518.315503	1034.61645	1.2927	0.00067005	1.6545	0.00085753	2.9472	0.0015276	518.3163014324844	138.42	1.5254	136.89	136.44	137.96	-1.5284					73	32	3	0	0	0	0.79715	1	13561	13561		19.36	0	1	110380	+		10487	26364	8606	8616	11339	11339					0.10052995867749814
FALLFALIW	9	Unmodified	_FALLFALIW_					0	0	0			REV__ENSG00000169836|ENST00000304883|TACR3	REV__ENSG00000169836|ENST00000304883|TACR3	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.3118286132812	2	547.325871	1092.63719	1.6311	0.00089272	-3.1736	-0.001737	-1.5426	-0.00084428	547.3241238885937	126.51	0.5944	126.51	126.28	126.87	0					18	12	2	0	0	0	0.027462	1	14635	14635		39.021	0	1	77898	+		10488	21486	8607	8617	11340	11340					0.09457586247413019
FALLHLLM	8	Unmodified	_FALLHLLM_					0	0	0			REV__nc|ENSG00000164053|Q8WXE1-5|ATRIP	REV__nc|ENSG00000164053|Q8WXE1-5|ATRIP	MULTI-MSMS	OvCa99_classI_Rep5	1	480.2868957519531	2	479.283149	956.551745	0.72486	0.00034741	2.73	0.0013084	3.4548	0.0016558	479.28462314699243	160.15	0.95288	160.15	159.86	160.81	0					41	18	3	0	0	0	0.64315	1	18769	18769		54.895	1.9579	1	188570	+		10489	20928	8608	8618	11341	11341					0.0717309779010975
FALLMALVV	9	Unmodified	_FALLMALVV_					0	0	0		ENSG00000120235|ENST00000380210|IFNA6;ENSG00000233816|ENST00000610660|IFNA13	ENSG00000120235|ENST00000380210|IFNA6	ENSG00000120235|ENST00000380210|IFNA6	MULTI-MSMS	OvCa99_classI_Rep5	1	488.7976379394531	2	488.798632	975.582711	-0.7775	-0.00038004	-3.5613	-0.0017408	-4.3388	-0.0021208	488.79676139175865	50.601	0.78949	50.601	50.288	51.078	0					31	17	3	0	0	0	0.42921	1	3858	3858		49.211	1.2952	1	909810			10490	3420	8609	8619	11342	11342					0.0939425110434513
FALNLAKGGH	10	Unmodified	_FALNLAKGGH_					0	0	0			REV__ENST00000490635.1_1_X:54026257-54040884:-|nuORF	REV__ENST00000490635.1_1_X:54026257-54040884:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	514.802734375	2	514.287808	1026.56106	-0.3483	-0.00017913	-0.079443	-4.0857E-05	-0.42775	-0.00021998	514.2870839522898	94.577	0.7854	93.477	93.165	93.95	-1.0995					21	15	2	0	0	0	0.027117	1	8437	8437		10.866	0	1	12132	+		10491	21738	8610	8620	11343	11343					0.04884582399995452
FALPGEDINS	10	Unmodified	_FALPGEDINS_					0	0	0			REV__ENSG00000135829|ENST00000367549|DHX9	REV__ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.757568359375	2	531.758746	1061.50294	-1.6004	-0.00085105	-2.2401	-0.0011912	-3.8406	-0.0020423	531.7574781057406	65.543	1.4596	62.058	61.743	63.202	-3.4854					49	29	2	0	0	0	0.39718	1	4726	4726		68.846	6.7387	1	644140	+		10492	19325	8611	8621	11344	11344					-0.02535144035960002
FALPILTGGL	10	Unmodified	_FALPILTGGL_					0	0	0			REV__ENSG00000169903|ENST00000305354|TM4SF4	REV__ENSG00000169903|ENST00000305354|TM4SF4	MULTI-MSMS	OvCa9_classI_Rep2	2	501.3035583496094	2	501.305136	1000.59572	-0.60395	-0.00030276	-2.6332	-0.00132	-3.2371	-0.0016228	501.3036625968001	45.316	1.7944	42.606	42.199	43.993	-2.7097					88	35	4	0	0	0	0.68695	2	2621	2621;2627		31.955	1.4512	1	439250	+		10493	21495	8612	8622	11345;11346	11345					0.09544405488099983
FALRTSTIFI	10	Unmodified	_FALRTSTIFI_					0	0	0			REV__ENST00000562171.1_1_16:68119636-68160404:+|nuORF	REV__ENST00000562171.1_1_16:68119636-68160404:+|nuORF	MSMS	OvCa99_classI_Rep5	1	584.8410034179688	2	584.839874	1167.66519	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.561	1	98.561	98.061	99.061	0								0	0	0	0.11716	1	10861	10861		62.107	2.1766	1		+		10494	27644	8613	8623	11347	11347					0.08806864436837714
FALSQPTEK	9	Unmodified	_FALSQPTEK_					0	0	0			REV__nc|ENSG00000119139|Q9UDY2-5|TJP2	REV__nc|ENSG00000119139|Q9UDY2-5|TJP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.8050842285156	2	510.771657	1019.52876	1.3739	0.00070172	-1.7175	-0.00087727	-0.34368	-0.00017554	510.7707763355731	138.78	0.62569	137.25	136.97	137.59	-1.5284					20	12	2	0	0	0	0.027462	1	13484	13484		27.882	7.8855	1	17076	+		10495	28814	8614	8624	11348	11348					0.019777502063448082
FALVLTPTR	9	Unmodified	_FALVLTPTR_					0	0	0		ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47;ENST00000544032.5_1_12:12966301-12974356:+|nuORF	ENST00000545038.5_1_12:12966301-12976268:+|nuORF	ENST00000545038.5_1_12:12966301-12976268:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	509.3062744140625	2	509.30821	1016.60187	-2.5875	-0.0013179	-1.6277	-0.000829	-4.2152	-0.0021469	509.30726434734663	146.58	1.0992	146.36	145.97	147.07	-0.22696					49	21	3	0	0	0	0.62352	1	14789	14789		29.15	7.4472	1	49197			10496	9147	8615	8625	11349	11349					0.09422923719603205
FALVYGIIV	9	Unmodified	_FALVYGIIV_					0	0	0			REV__tr|A0A553SNM0|A0A553SNM0_NIACIQacEfamilyquaternaryammoniumcompoundeffluxSMRtransporterOS=NialliacirculansOX=1397GN=CEQ21_24780PE=3SV=1	REV__tr|A0A553SNM0|A0A553SNM0_NIACIQacEfamilyquaternaryammoniumcompoundeffluxSMRtransporterOS=NialliacirculansOX=1397GN=CEQ21_24780PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	497.8018798828125	2	497.802229	993.589904	1.2092	0.00060192	-3.1761	-0.0015811	-1.967	-0.00097917	497.8004964460781	111.65	0.91527	111.65	111.33	112.25	0					46	19	4	0	0	0	0.32242	1	12684	12684		60.404	8.1045	1	1289100	+		10497	30432	8616	8626	11350	11350					0.09285306976437369
FAMKIKGG	8	Unmodified	_FAMKIKGG_					0	0	0			REV__ENST00000395965.7_2_5:92954874-92955120:-|nuORF	REV__ENST00000395965.7_2_5:92954874-92955120:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	426.2475280761719	2	426.244024	850.473494	1.5061	0.00064196	3.0836	0.0013144	4.5897	0.0019563	426.24523618232024	139.52	1.3271	138.02	137.63	138.95	-1.4952					53	25	3	0	0	0	0.74679	2	13646	13634;13646		28.254	1.4582	1	256270	+		10498	25324	8617	8627	11351;11352	11352					0.042276652048713004
FAMPYFIQV	9	Unmodified	_FAMPYFIQV_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa99_classI_Rep5	1	558.2839965820312	2	558.283346	1114.55214	0.87597	0.00048904	-0.48258	-0.00026942	0.39339	0.00021962	558.2829316327775	161.41	1.3185	161.41	161.11	162.43	0					64	25	4	0	0	0	0.17908	2	18937	18913;18937		79.939	23.218	1	852760			10499	4906	8618	8628	11353;11354	11354					-0.0005552728071052115
FAMQVLHAL	9	Unmodified	_FAMQVLHAL_					0	0	0			REV__nc|ENSG00000130396|P55196-6|AFDN	REV__nc|ENSG00000130396|P55196-6|AFDN	MULTI-MSMS	OvCa9_classI_Rep2	2	515.7807006835938	2	515.281137	1028.54772	-0.89809	-0.00046277	1.3294	0.00068503	0.43135	0.00022227	515.7827403771082	116.95	1.5848	116.82	116.27	117.86	-0.12869					85	31	4	0	0	0	0.42057	1	11220	11220		50.025	9.2464	1	107950	+		10500	28847	8619	8629	11355	11355					0.03459008296385946
FAMVLLIFPAI	11	Unmodified	_FAMVLLIFPAI_					0	0	0		ENST00000375290.6_3_9:98215758-98232201:-|nuORF;PTCH1|p.S1176Yfs*8|1|0.05|ENSG00000185920|chr9:95449863-95449864|-/T|frameshift_variant;nc|ENSG00000185920|Q13635-4|PTCH1;nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;ENSG00000185920|ENST00000331920|PTCH1;PTCH1|p.N584_F585insLLLKAKFRI|1|0.07|ENSG00000185920|chr9:95469908-95469909|-/ATCCTAAATTTGGCTTTCAAAAGCAAG|inframe_insertion	ENST00000375290.6_3_9:98215758-98232201:-|nuORF	ENST00000375290.6_3_9:98215758-98232201:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	412.5704345703125	3	412.247123	1233.71954	0.35283	0.00014545	0.46692	0.00019249	0.81975	0.00033794	412.247112521867	20.369	0.6091	19.03	18.803	19.412	-1.3386					16	11	2	0	0	0	0.7246	1	21	21		20.837	0.80668	1	16437			10501	8300	8620	8630	11356	11356					0.11202740264093336
FANGRSTGL	9	Unmodified	_FANGRSTGL_					0	0	0		nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000136518|ENST00000429709|ACTL6A;ACTL6B|p.N233Kfs*17|1|0.32|ENSG00000077080|chr7:100647507-100647508|-/G|frameshift_variant;ENSG00000077080|ENST00000160382|ACTL6B	nc|ENSG00000136518|O96019-2|ACTL6A	nc|ENSG00000136518|O96019-2|ACTL6A	MULTI-MSMS	OvCa99_classI_Rep5	1	461.7419738769531	2	461.740691	921.466829	-0.85587	-0.00039519	0.66135	0.00030537	-0.19451	-8.9815E-05	461.7408979569588	49.715	0.9138	49.715	49.462	50.376	0					42	20	4	0	0	0	0.2077	1	3728	3728		75.043	11.737	1	1668100			10502	4492	8621	8631	11357	11357					0.002954435778519837
FANGRSTGL	9	Unmodified	_FANGRSTGL_					0	0	0		nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000136518|ENST00000429709|ACTL6A;ACTL6B|p.N233Kfs*17|1|0.32|ENSG00000077080|chr7:100647507-100647508|-/G|frameshift_variant;ENSG00000077080|ENST00000160382|ACTL6B	nc|ENSG00000136518|O96019-2|ACTL6A	nc|ENSG00000136518|O96019-2|ACTL6A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	461.740691	921.466829	-1.2761	-0.00058925	-0.93287	-0.00043074	-2.209	-0.00102	461.7421545637305	52.479	0.19718	49.666	49.543	49.74	-2.8129	-0.024396	-0.0013376	NaN	75.043	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4227.2			10503	4492	8621	8631							0.002954435778519837
FANKQDVAGAL	11	Unmodified	_FANKQDVAGAL_					0	0	0		nc|ENSG00000113595|P36406-3|TRIM23;nc|ENSG00000113595|P36406-2|TRIM23;ENSG00000113595|ENST00000231524|TRIM23	nc|ENSG00000113595|P36406-3|TRIM23	nc|ENSG00000113595|P36406-3|TRIM23	MULTI-MSMS	OvCa99_classI_Rep5	1	567.8057861328125	2	567.301113	1132.58767	2.2092	0.0012533	4.1952	0.00238	6.4044	0.0036332	567.303120202588	102.14	1.9943	102.14	101.73	103.73	0					104	44	5	0	0	0	0.43993	1	11444	11444		58.23	3.4536	1	6665200			10504	2981	8622	8632	11358	11358					0.026682265006456873
FAPAMQPAAF	10	Unmodified	_FAPAMQPAAF_					0	0	0			REV__ENSG00000106351|ENST00000300176|AGFG2	REV__ENSG00000106351|ENST00000300176|AGFG2	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.8037719726562	2	525.757495	1049.50044	-0.42829	-0.00022518	0.68082	0.00035795	0.25253	0.00013277	525.7574639452805	80.345	0.30418	78.012	77.765	78.07	-2.3337					6	5	2	0	0	0	0.026669	1	4388	4388		47.916	9.1095	1	6455.3	+		10505	17799	8623	8633	11359	11359					-0.022332709746024193
FAPHKKVLTKN	11	Unmodified	_FAPHKKVLTKN_					0	0	0		nc|ENSG00000164691|Q8N103-3|TAGAP;nc|ENSG00000164691|Q8N103-2|TAGAP;TAGAP|p.L628Sfs*38|1|0.1|ENSG00000164691|chr6:159036141-159036142|-/A|frameshift_variant;ENSG00000164691|ENST00000367066|TAGAP	nc|ENSG00000164691|Q8N103-3|TAGAP	nc|ENSG00000164691|Q8N103-3|TAGAP	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8826293945312	2	641.885147	1281.75574	-5.3554	-0.0034376	1.3541	0.00086916	-4.0013	-0.0025684	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.72459	1	13264	13264		20.947	0	1	804890			10506	15148	8624	8634	11360	11360					0.12613333485114708
FAPIHKVI	8	Unmodified	_FAPIHKVI_					0	0	0		ENSG00000106665|ENST00000223398|CLIP2;nc|ENSG00000106665|Q9UDT6-2|CLIP2	ENSG00000106665|ENST00000223398|CLIP2	ENSG00000106665|ENST00000223398|CLIP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.3248291015625	2	462.786913	923.559273	-0.91976	-0.00042565	-3.4327	-0.0015886	-4.3524	-0.0020143	462.78519446456914	82.666	0.97631	79.983	79.733	80.71	-2.6829					38	19	3	0	0	0	0.028476	1	6856	6856		42.474	5.446	1	135230			10507	2569	8625	8635	11361	11361					0.094435733820319
FAPPSPSPLF	10	Unmodified	_FAPPSPSPLF_					0	0	0			REV__ENSG00000069399|ENST00000164227|BCL3	REV__ENSG00000069399|ENST00000164227|BCL3	MULTI-MSMS	OvCa99_classI_Rep5	1	530.2796020507812	2	530.279118	1058.54368	1.006	0.00053344	0.61558	0.00032643	1.6215	0.00085987	530.2793603160508	156.46	2.3789	156.46	155.99	158.37	0					109	47	5	0	0	0	0.62668	1	18382	18382		38.806	0	1	1799000	+		10508	16868	8626	8636	11362	11362					0.016752420743159746
FAPRDPIP	8	Unmodified	_FAPRDPIP_					0	0	0		nc|ENSG00000104852|P08621-3|SNRNP70;nc|ENSG00000104852|P08621-2|SNRNP70;ENSG00000104852|ENST00000598441|SNRNP70	nc|ENSG00000104852|P08621-3|SNRNP70	nc|ENSG00000104852|P08621-3|SNRNP70	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.7445068359375	2	456.750527	911.486502	-6.3305	-0.0028915	-3.6938	-0.0016871	-10.024	-0.0045786	456.7479075440041	163.68	0.72723	162.05	161.7	162.43	-1.6336					28	20	2	0	0	0	0.72134	1	16180	16180		39.021	7.0666	1	22117			10509	2398	8627	8637	11363	11363					0.027218195886121066
FAPYPPLSF	9	Unmodified	_FAPYPPLSF_					0	0	0			REV__ENSG00000064932|ENST00000361757|SBNO2	REV__ENSG00000064932|ENST00000361757|SBNO2	MULTI-MSMS	OvCa9_classI_Rep2	2	519.7694702148438	2	519.768386	1037.52222	-0.69853	-0.00036307	4.4534	0.0023147	3.7548	0.0019516	519.7700861063805	55.572	1.2406	52.768	52.282	53.523	-2.804					60	24	3	0	0	0	0.50066	1	3870	3870		42.474	1.9018	1	305630	+		10510	16779	8628	8638	11364	11364					0.004958570455983136
FARAEKYR	8	Unmodified	_FARAEKYR_					0	0	0			REV__nc|ENSG00000106692|O75072-2|FKTN	REV__nc|ENSG00000106692|O75072-2|FKTN	MULTI-MSMS	OvCa9_classI_Rep2	2	520.7830200195312	2	520.785433	1039.55631	0.27719	0.00014436	-4.126	-0.0021487	-3.8488	-0.0020044	520.7831116898267	31.623	1.0879	28.913	28.74	29.828	-2.7097					47	21	4	0	0	0	0.72896	1	982	982		37.159	4.3467	1	197730	+		10511	17821	8629	8639	11365	11365					0.03811698257209173
FARGVDAYL	9	Unmodified	_FARGVDAYL_					0	0	0		tr|A0A553SQL5|A0A553SQL5_NIACITypeIIsecretionsystemproteinGspFdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07875PE=4SV=1	tr|A0A553SQL5|A0A553SQL5_NIACITypeIIsecretionsystemproteinGspFdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07875PE=4SV=1	tr|A0A553SQL5|A0A553SQL5_NIACITypeIIsecretionsystemproteinGspFdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07875PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	506.2691955566406	2	506.266542	1010.51853	2.6479	0.0013405	-0.6804	-0.00034446	1.9675	0.00099607	506.2660947758917	89.255	0.92871	89.255	88.962	89.891	0					48	22	3	0	0	0	0.48324	1	9517	9517		44.117	1.6423	1	3127800			10512	34173	8630	8640	11366	11366					0.013691872717345177
FARPQPLWL	9	Unmodified	_FARPQPLWL_					0	0	0		ENST00000367602.7_1_1:180168067-180168433:+|nuORF	ENST00000367602.7_1_1:180168067-180168433:+|nuORF	ENST00000367602.7_1_1:180168067-180168433:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.3248291015625	2	564.321651	1126.62875	0.97655	0.00055109	3.754	0.0021185	4.7306	0.0026696	564.3237500544434	102.85	2.5142	100.65	100.25	102.77	-2.1994					128	47	4	0	0	0	0.61208	1	9371	9371		30.504	1.3541	1	5226800			10513	10851	8631	8641	11367	11367					0.07050032330812428
FARQYILAK	9	Unmodified	_FARQYILAK_					0	0	0		nc|ENSG00000254838|Q7Z2Y8|GVINP1;ENST00000526769.3_1_11:6735844-6741409:-|nuORF	nc|ENSG00000254838|Q7Z2Y8|GVINP1	nc|ENSG00000254838|Q7Z2Y8|GVINP1	MULTI-MSMS	OvCa9_classI_Rep2	2	555.3258056640625	2	555.326934	1108.63931	-0.46526	-0.00025837	-3.5345	-0.0019628	-3.9998	-0.0022212	555.3248709586028	84.402	1.9194	82.855	82.072	83.992	-1.5462					87	37	4	0	0	0	0.44294	1	7266	7266		47.916	1.9636	1	491770			10514	15353	8632	8642	11368	11368					0.08934014985220529
FARTGTFVGNS	11	Unmodified	_FARTGTFVGNS_					0	0	0		ENST00000307145.3_2_15:31665219-31665552:+|nuORF	ENST00000307145.3_2_15:31665219-31665552:+|nuORF	ENST00000307145.3_2_15:31665219-31665552:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	579.3226928710938	2	578.790912	1155.56727	-2.0387	-0.00118	1.7406	0.0010074	-0.29814	-0.00017256	578.7905292490221	50.432	0.25967	47.29	47.132	47.392	-3.1416					6	4	2	0	0	0	0.025466	1	2911	2911		40.058	0.80534	1	12109			10515	10251	8633	8643	11369	11369					-0.004289441591254217
FASEVSNVL	9	Unmodified	_FASEVSNVL_					0	0	0		nc|ENSG00000136738|Q92783-2|STAM;ENSG00000136738|ENST00000377524|STAM	nc|ENSG00000136738|Q92783-2|STAM	nc|ENSG00000136738|Q92783-2|STAM	MULTI-MSMS	OvCa99_classI_Rep5	1	483.2528381347656	2	483.250557	964.486562	1.8715	0.00090443	0.56484	0.00027296	2.4364	0.0011774	483.25066293702463	106.74	0.56937	106.74	106.49	107.06	0					28	12	3	0	0	0	0.10363	1	12024	12024		96.19	13.885	1	806420			10516	4510	8634	8644	11370	11370					0.002897747979545784
FASFKWNF	8	Unmodified	_FASFKWNF_					0	0	0		ENSG00000134343|ENST00000256737|ANO3;nc|ENSG00000134343|Q9BYT9-2|ANO3	ENSG00000134343|ENST00000256737|ANO3	ENSG00000134343|ENST00000256737|ANO3	MULTI-MSMS	OvCa9_classI_Rep2	2	523.7565307617188	2	523.758352	1045.50215	0.93308	0.00048871	-2.1203	-0.0011105	-1.1872	-0.00062181	523.7571694319277	126.45	0.93601	126.22	125.8	126.74	-0.2359					31	18	2	0	0	0	0.74229	1	12343	12343		30.504	1.3541	1	123630			10517	4288	8635	8645	11371	11371					-0.0187789389435693
FASFPHMVL	9	Unmodified	_FASFPHMVL_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23;nc|ENSG00000112282|Q9ULK4-6|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MSMS	OvCa99_classI_Rep5	1	524.7688598632812	2	524.767863	1047.52117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.2	1	119.2	118.7	119.7	0								0	0	0	0.042891	1	13677	13677		79.939	13.51	1				10518	2892	8636	8646	11372	11372					-0.0006868059492717293
FASFPHMVL	9	Unmodified	_FASFPHMVL_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23;nc|ENSG00000112282|Q9ULK4-6|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MSMS	OvCa99_classI_Rep5	1	524.7700805664062	2	524.767863	1047.52117	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.38	1	119.38	118.88	119.88	0								0	0	0	0.026132	1	13700	13700		92.191	42.166	1				10519	2892	8636	8646	11373	11373					-0.0006868059492717293
FASGLIHRV	9	Unmodified	_FASGLIHRV_					0	0	0		ENST00000490672.1_1_1:155141918-155142388:-|nuORF;ENST00000463527.5_1_1:155141918-155144917:-|nuORF;ENST00000471891.5_1_1:155141918-155145146:-|nuORF;ENSG00000163463|ENST00000295682|KRTCAP2;ENST00000497317.5_1_1:155141901-155145703:-|nuORF;nc|ENSG00000163463|Q8N6L1-2|KRTCAP2	ENST00000490672.1_1_1:155141918-155142388:-|nuORF	ENST00000490672.1_1_1:155141918-155142388:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	500.2918395996094	2	500.290351	998.566149	-0.10754	-5.3801E-05	-0.58887	-0.0002946	-0.69641	-0.00034841	500.2898972472957	66.592	1.2782	66.592	66.288	67.566	0					70	31	4	0	0	0	0.068524	2	6191	6161;6191		108.09	41.658	1	4764400			10520	6308	8637	8647	11374;11375	11375					0.06680886262597596
FASHVSPEV	9	Unmodified	_FASHVSPEV_					0	0	0		nc|ENSG00000242247|Q9NP61-2|ARFGAP3;ENSG00000242247|ENST00000263245|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	nc|ENSG00000242247|Q9NP61-2|ARFGAP3	MULTI-MSMS	OvCa99_classI_Rep5	1	486.74456787109375	2	486.742899	971.471246	-0.94983	-0.00046232	0.63664	0.00030988	-0.3132	-0.00015245	486.74320949908554	64.235	1.4115	64.235	63.974	65.385	0					95	34	5	0	0	0	0.042513	1	5819	5819		124.59	36.898	1	16351000			10521	9361	8638	8648	11376	11376					-0.01563091999230437
FASKHKQEI	9	Unmodified	_FASKHKQEI_					0	0	0		SNF8|p.E205Rfs*13|1|0.04|ENSG00000159210|chr17:48931669-48931669|C/-|frameshift_variant;nc|ENSG00000159210|Q96H20-2|SNF8;ENSG00000159210|ENST00000502492|SNF8	SNF8|p.E205Rfs*13|1|0.04|ENSG00000159210|chr17:48931669-48931669|C/-|frameshift_variant	SNF8|p.E205Rfs*13|1|0.04|ENSG00000159210|chr17:48931669-48931669|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	544.2987060546875	2	544.298373	1086.58219	-0.52055	-0.00028333	0.18182	9.8965E-05	-0.33873	-0.00018437	544.2981813624579	29.263	0.74789	29.263	29.137	29.885	0					25	14	3	0	0	0	0.49652	1	1033	1033		42.864	7.246	1	272250			10522	5994	8639	8649	11377	11377					0.04236547708865146
FASMHRFGP	9	Unmodified	_FASMHRFGP_					0	0	0		ENSG00000139180|ENST00000266544|NDUFA9	ENSG00000139180|ENST00000266544|NDUFA9	ENSG00000139180|ENST00000266544|NDUFA9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.2781372070312	2	525.252911	1048.49127	-2.4905	-0.0013082	1.808	0.00094966	-0.68254	-0.00035851	525.2541922196087	49.935	0.20834	46.794	46.663	46.871	-3.1416					5	3	2	0	0	0	0.027462	1	2839	2839		11.511	0	1	14425			10523	4753	8640	8650	11378	11378					-0.031036195402521116
FASRYWLVI	9	Unmodified	_FASRYWLVI_					0	0	0			REV__nc|ENSG00000115598|Q9HB29-2|IL1RL2	REV__nc|ENSG00000115598|Q9HB29-2|IL1RL2	MSMS	OvCa9_classI_Rep4_	4	577.822998046875	2	577.821484	1153.62842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.74	1	130.24	129.74	130.74	-1.5015								0	0	0	0.18141	1	12670	12670		32.812	2.4947	1		+		10524	18258	8641	8651	11379	11379					0.05774612610935037
FASVAPLLEF	10	Unmodified	_FASVAPLLEF_					0	0	0		nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-2|UNC80;nc|ENSG00000144406|Q8N2C7-4|UNC80;ENST00000489023.5_1_2:210693994-210832362:+|nuORF	nc|ENSG00000144406|Q8N2C7-7|UNC80	nc|ENSG00000144406|Q8N2C7-7|UNC80	MULTI-MSMS	OvCa9_classI_Rep2	2	547.2987060546875	2	547.30005	1092.58555	0.33936	0.00018573	-4.1464	-0.0022693	-3.8071	-0.0020836	547.297579565995	113.81	1.1845	113.69	113.37	114.55	-0.11777					43	23	2	0	0	0	0.48198	1	10806	10806		56.721	5.5284	1	185430			10525	5149	8642	8652	11380	11380					0.04295797762847542
FATAAFFFFF	10	Unmodified	_FATAAFFFFF_					0	0	0		ENST00000491976.1_1_1:31888748-31907043:+|nuORF;ENSG00000168528|ENST00000373709|SERINC2;nc|ENSG00000168528|Q96SA4-3|SERINC2;nc|ENSG00000168528|Q96SA4-2|SERINC2;nc|ENSG00000168528|Q96SA4-4|SERINC2;ZCCHC17-SERINC2|1|fusion	ENST00000491976.1_1_1:31888748-31907043:+|nuORF	ENST00000491976.1_1_1:31888748-31907043:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	405.8662109375	3	405.867299	1214.58007	3.0031	0.0012189	-3.8125	-0.0015474	-0.80938	-0.0003285	405.8656502294352	58.999	2.532	55.873	55.114	57.646	-3.1264					157	70	3	0	0	0	0.77039	1	1820	1820		22.58	1.6327	1	158560			10526	6918	8643	8653	11381	11381					-0.018638810289758112
FAVAPNQNL	9	Unmodified	_FAVAPNQNL_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	MULTI-MSMS	OvCa99_classI_Rep5	1	487.259521484375	2	487.258717	972.50288	1.962	0.00095601	0.32209	0.00015694	2.2841	0.001113	487.25874138801663	95.434	1.092	95.434	95.161	96.253	0					59	25	3	0	0	0	0.048552	2	10402	10402;10432		119.56	28.78	1	9318400			10527	4957	8644	8654	11382;11383	11382					0.015529007547002038
FAVAVVKKSAS	11	Unmodified	_FAVAVVKKSAS_					0	0	0		nc|ENSG00000091513|P02787|TF	nc|ENSG00000091513|P02787|TF	nc|ENSG00000091513|P02787|TF	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8301391601562	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.68021	1	11723	11723		36.447	10.873	1	308210			10528	14918	8645	8655	11384	11384					0.10094577919812764
FAVDLSSTSSH	11	Unmodified	_FAVDLSSTSSH_					0	0	0			REV__ENST00000379965.7_1_11:5730726-5730846:+|nuORF	REV__ENST00000379965.7_1_11:5730726-5730846:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.8521118164062	2	575.772385	1149.53022	-0.75522	-0.00043484	1.0751	0.00061902	0.31988	0.00018418	575.7733051634323	89.158	0.58613	86.555	86.286	86.873	-2.6027					15	11	2	0	0	0	0.025806	1	7656	7656		18.262	0	1	54014	+		10529	25170	8646	8656	11385	11385					-0.03856660495557662
FAVDWVQHQ	9	Unmodified	_FAVDWVQHQ_					0	0	0			REV__nc|ENSG00000160193|P57081-3|WDR4	REV__nc|ENSG00000160193|P57081-3|WDR4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.299560546875	2	565.274898	1128.53524	0.85647	0.00048414	2.4438	0.0013814	3.3003	0.0018656	565.2758275024854	123.6	0.64127	122.23	122	122.64	-1.3666					22	12	3	0	0	0	0.027462	1	11719	11719		24.203	10.066	1	23431	+		10530	20643	8647	8657	11386	11386					-0.023883118423100314
FAVEQRLI	8	Unmodified	_FAVEQRLI_					0	0	0			REV__ENSG00000135776|ENST00000344517|ABCB10	REV__ENSG00000135776|ENST00000344517|ABCB10	MULTI-MSMS	OvCa99_classI_Rep5	1	488.2861022949219	2	488.284734	974.554916	1.9707	0.00096227	0.016105	7.8639E-06	1.9868	0.00097014	488.28471406113636	85.727	1.091	85.727	85.462	86.553	0					84	26	5	0	0	0	0.53531	2	9022	9022;9055		73.975	3.6781	1	50236000	+		10531	19322	8648	8658	11387;11388	11387					0.06662064168483539
FAVIGQTHH	9	Unmodified	_FAVIGQTHH_					0	0	0			REV__sp|P17147|DNBI_HCMVAMajorDNA-bindingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=DBPPE=1SV=1	REV__sp|P17147|DNBI_HCMVAMajorDNA-bindingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=DBPPE=1SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	505.2638244628906	2	505.264333	1008.51411	0.8595	0.00043427	-0.94134	-0.00047563	-0.081844	-4.1353E-05	505.26375901484937	29.367	1.0512	26.658	26.456	27.508	-2.7097					36	21	2	0	0	0	0.44294	1	715	715		47.916	9.1095	1	167190	+		10532	29404	8649	8659	11389	11389					0.01019722848843685
FAVIVVLLL	9	Unmodified	_FAVIVVLLL_					0	0	0		ENST00000374872.4_2_X:62974367-62974952:-|nuORF	ENST00000374872.4_2_X:62974367-62974952:-|nuORF	ENST00000374872.4_2_X:62974367-62974952:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.31805419921875	2	493.836071	985.65759	-0.39001	-0.0001926	-3.6014	-0.0017785	-3.9914	-0.0019711	493.83557176757824	103.61	0.24715	103.04	102.83	103.08	-0.57639					6	4	2	0	0	0	0.02744	1	9573	9573		60.404	11.193	1	10398			10533	11043	8650	8660	11390	11390					0.1641875690722827
FAVIVVLLL	9	Unmodified	_FAVIVVLLL_					0	0	0		ENST00000374872.4_2_X:62974367-62974952:-|nuORF	ENST00000374872.4_2_X:62974367-62974952:-|nuORF	ENST00000374872.4_2_X:62974367-62974952:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.31787109375	2	493.836071	985.65759	-0.086805	-4.2868E-05	-1.194	-0.00058965	-1.2808	-0.00063252	493.8349669976671	104.99	0.30393	102.87	102.74	103.05	-2.1192					8	5	2	0	0	0	0.02744	1	9530	9530		60.404	11.193	1	12480			10534	11043	8650	8660	11391	11391					0.1641875690722827
FAVKPVFSFN	10	Unmodified	_FAVKPVFSFN_					0	0	0		ENST00000370251.3_2_X:152616633-152616939:+|nuORF	ENST00000370251.3_2_X:152616633-152616939:+|nuORF	ENST00000370251.3_2_X:152616633-152616939:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.3099975585938	2	578.313492	1154.61243	-2.9942	-0.0017316	-2.6266	-0.001519	-5.6208	-0.0032506	578.3118346791387	149.42	1.2353	147.99	147.64	148.88	-1.4344					62	24	3	0	0	0	0.74374	1	14769	14769		25.574	0	1	130810			10535	10923	8651	8661	11392	11392					0.04130906374052756
FAVLERKI	8	Unmodified	_FAVLERKI_					0	0	0		tr|A0A553SG52|A0A553SG52_NIACIDUF1811familyproteinOS=NialliacirculansOX=1397GN=CEQ21_10230PE=4SV=1	tr|A0A553SG52|A0A553SG52_NIACIDUF1811familyproteinOS=NialliacirculansOX=1397GN=CEQ21_10230PE=4SV=1	tr|A0A553SG52|A0A553SG52_NIACIDUF1811familyproteinOS=NialliacirculansOX=1397GN=CEQ21_10230PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.2861022949219	2	488.302927	974.591301	1.9545	0.00095438	-3.5709	-0.0017437	-1.6165	-0.00078932	488.3022442369082	85.682	0.36781	85.682	85.544	85.912	0					13	8	2	0	0	0	0.028476	1	9022	9022		71.296	5.4925	1	265180			10536	33119	8652	8662	11393	11393					0.10298941065184408
FAVLMAHVEVK	11	Unmodified	_FAVLMAHVEVK_					0	0	0		ENSG00000150471|ENST00000683033|ADGRL3;nc|ENSG00000150471|Q9HAR2-2|ADGRL3;nc|ENSG00000150471|Q9HAR2|ADGRL3;nc|ENSG00000150471|Q9HAR2-4|ADGRL3	ENSG00000150471|ENST00000683033|ADGRL3	ENSG00000150471|ENST00000683033|ADGRL3	MULTI-MSMS	OvCa9_classI_Rep4_	4	622.3464965820312	2	622.347009	1242.67946	-1.5822	-0.00098469	3.2053	0.0019948	1.6231	0.0010101	622.3488602972496	119.44	1.6147	118.1	117.78	119.4	-1.3444					76	30	4	0	0	0	0.58572	1	11223	11223		45.972	5.9141	1	425170			10537	5508	8653	8663	11394	11394					0.0678319359346915
FAVPKTEN	8	Unmodified	_FAVPKTEN_					0	0	0		nc|ENSG00000151276|Q96QZ7-7|MAGI1;nc|ENSG00000151276|Q96QZ7-6|MAGI1;ENSG00000151276|ENST00000402939|MAGI1;nc|ENSG00000151276|Q96QZ7|MAGI1;nc|ENSG00000151276|Q96QZ7-4|MAGI1;nc|ENSG00000151276|Q96QZ7-3|MAGI1;nc|ENSG00000151276|Q96QZ7-5|MAGI1	nc|ENSG00000151276|Q96QZ7-7|MAGI1	nc|ENSG00000151276|Q96QZ7-7|MAGI1	MULTI-SECPEP	OvCa99_classI_Rep5	1	453.7623596191406	2	453.239993	904.465432	0.19426	8.8047E-05	2.5282	0.0011459	2.7224	0.0012339	453.2410767036669	51.215	0.29753	51.215	51.12	51.418	0					9	6	2	0	0	0	0.028476	1	3965	3965		24.203	10.427	1	142560			10538	5545	8654	8664	11395	11395					0.00937809489096253
FAVPVWKEI	9	Unmodified	_FAVPVWKEI_					0	0	0		ENST00000425688.1_1_2:166651406-166657756:+|nuORF	ENST00000425688.1_1_2:166651406-166657756:+|nuORF	ENST00000425688.1_1_2:166651406-166657756:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	544.8084716796875	2	544.810585	1087.60662	-0.34732	-0.00018922	-4.136	-0.0022533	-4.4833	-0.0024426	544.807894746868	78.293	2.6731	76.553	75.205	77.878	-1.7398					144	51	4	0	0	0	0.16524	1	6539	6539		82.305	0.064519	1	701020			10539	11723	8655	8665	11396	11396					0.06631807862368078
FAVRMQQP	8	Unmodified	_FAVRMQQP_					0	0	0			REV__nc|ENSG00000110888|Q6IMN6-4|CAPRIN2	REV__nc|ENSG00000110888|Q6IMN6-4|CAPRIN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.286376953125	2	488.755287	975.496021	2.306	0.0011271	-4.3573	-0.0021296	-2.0512	-0.0010025	488.7530380054066	86.211	0.72536	86.211	85.954	86.679	0					35	17	3	0	0	0	0.028476	1	9055	9055		44.531	5.7249	1	1474200	+		10540	18007	8656	8666	11397	11397					0.007292646024893656
FAVSLGGVETI	11	Unmodified	_FAVSLGGVETI_					0	0	0		tr|A0A7D6VSQ4|A0A7D6VSQ4_9CLOTAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_23680PE=3SV=1	tr|A0A7D6VSQ4|A0A7D6VSQ4_9CLOTAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_23680PE=3SV=1	tr|A0A7D6VSQ4|A0A7D6VSQ4_9CLOTAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_23680PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.2569580078125	2	546.800414	1091.58628	2.5168	0.0013762	-1.2972	-0.00070931	1.2196	0.0006669	546.7999606290632	94.262	0.55188	94.262	93.923	94.475	0					18	12	2	0	0	0	0.025332	1	10207	10207		41.427	2.4051	1	582560			10541	35048	8657	8667	11398	11398					0.04414592411922058
FAVSLLVVLY	10	Unmodified	_FAVSLLVVLY_					0	0	0			REV__ENSG00000183840|ENST00000329321|GPR39	REV__ENSG00000183840|ENST00000329321|GPR39	MULTI-MSMS	OvCa9_classI_Rep2	2	562.3425903320312	2	562.341718	1122.66888	-1.142	-0.00064221	3.7902	0.0021314	2.6482	0.0014892	562.3438081477608	141.84	4.7959	141.62	140.24	145.03	-0.22697					133	96	2	0	0	0	0.80532	1	14380	14380		18.324	1.8513	1	113870	+		10542	22389	8658	8668	11399	11399					0.11245534210729602
FAVYTLQTL	9	Unmodified	_FAVYTLQTL_					0	0	0		ENSG00000159708|ENST00000329956|LRRC36	ENSG00000159708|ENST00000329956|LRRC36	ENSG00000159708|ENST00000329956|LRRC36	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.2901000976562	2	528.292225	1054.5699	-1.7846	-0.00094279	-2.406	-0.0012711	-4.1906	-0.0022139	528.2908326303716	120.39	1.0283	119.04	118.72	119.75	-1.3444					40	19	3	0	0	0	0.2422	1	11321	11321		69.628	8.6557	1	160660			10543	6024	8659	8669	11400	11400					0.04479511245813228
FAVYTLQTL	9	Unmodified	_FAVYTLQTL_					0	0	0		ENSG00000159708|ENST00000329956|LRRC36	ENSG00000159708|ENST00000329956|LRRC36	ENSG00000159708|ENST00000329956|LRRC36	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	528.292225	1054.5699	-2.0692	-0.0010931	-1.9649	-0.001038	-4.0341	-0.0021312	528.2910380976961	119.39	1.0343	119.22	118.81	119.84	-0.17137	0.13673	0.0011916	NaN	69.628	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94142			10544	6024	8659	8669							0.04479511245813228
FAVYTLQTL	9	Unmodified	_FAVYTLQTL_					0	0	0		ENSG00000159708|ENST00000329956|LRRC36	ENSG00000159708|ENST00000329956|LRRC36	ENSG00000159708|ENST00000329956|LRRC36	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	528.292225	1054.5699	0.60514	0.00031969	-4.8579	-0.0025664	-4.2528	-0.0022467	528.2895188623011	120.01	1.0794	118.98	118.68	119.75	-1.0271	-0.099091	-0.0018651	NaN	69.628	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147030			10545	6024	8659	8669							0.04479511245813228
FAYDFGINI	9	Unmodified	_FAYDFGINI_					0	0	0			REV__tr|A0A553SS97|A0A553SS97_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02650PE=3SV=1	REV__tr|A0A553SS97|A0A553SS97_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02650PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.7763061523438	2	530.260925	1058.5073	-1.1322	-0.00060035	-2.584	-0.0013702	-3.7162	-0.0019706	530.2590258954903	94.407	1.1521	93.308	92.749	93.901	-1.0995					30	22	2	0	0	0	0.027462	1	8398	8398		29.15	0	1	22808	+		10546	30815	8660	8670	11401	11401					-0.019616348223962632
FAYDGKDY	8	Unmodified	_FAYDGKDY_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	MULTI-MSMS	OvCa99_classI_Rep5	1	489.71575927734375	2	489.713808	977.413062	-0.17904	-8.7677E-05	0.54495	0.00026687	0.36591	0.00017919	489.7138597099561	68.837	0.53975	68.837	68.606	69.145	0					28	12	3	0	0	0	0.57734	1	6524	6524		68.787	5.4806	1	1175000			10547	9006	8661	8671	11402	11402					-0.0765477364451499
FAYDGKDYL	9	Unmodified	_FAYDGKDYL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	MULTI-MSMS	OvCa99_classI_Rep5	1	546.2568969726562	2	546.25584	1090.49713	1.3407	0.00073238	0.76557	0.0004182	2.1063	0.0011506	546.2561750692793	93.367	2.2352	93.367	93.093	95.328	0					138	52	5	0	0	0	0.025955	2	10132	10132;10163		139.97	43.78	1	35786000			10548	9006	8662	8672	11403;11404	11403					-0.04450242547613925
FAYHLRQW	8	Unmodified	_FAYHLRQW_					0	0	0		XPO1-USP34|2|fusion;USP34|p.K3306Nfs*3|1|0.18|ENSG00000115464|chr2:61189025-61189025|T/-|frameshift_variant;nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34	XPO1-USP34|2|fusion	XPO1-USP34|2|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.7643432617188	2	560.787976	1119.5614	0.035137	1.9705E-05	-0.56508	-0.00031689	-0.52994	-0.00029718	560.787454351512	59.746	0.94413	59.746	59.533	60.477	0					75	23	4	0	0	0	0.028476	1	5189	5189		39.021	8.5179	1	4467700			10549	36309	8663	8673	11405	11405					0.0064000211982602195
FAYICLGH	8	Unmodified	_FAYICLGH_					0	0	0		chr8:39924772-39927830|260|13.18|0.82|4.01|+|2|IDO1,IDO1|1	chr8:39924772-39927830|260|13.18|0.82|4.01|+|2|IDO1,IDO1|1	chr8:39924772-39927830|260|13.18|0.82|4.01|+|2|IDO1,IDO1|1	MULTI-SECPEP	OvCa9_classI_Rep3	3	462.28851318359375	2	462.225831	922.437109	-1.1691	-0.00054038	-2.2135	-0.0010231	-3.3825	-0.0015635	462.2244107885052	86.382	0.50179	84.162	83.885	84.387	-2.2204					15	9	2	0	0	0	0.028476	1	5108	5108		16.705	0	1	16339			10550	547	8664	8674	11406	11406					-0.027212116918462925
FAYPAIRYL	9	Unmodified	_FAYPAIRYL_					0	0	0		ENST00000496863.5_1_1:155679570-155695280:+|nuORF;ENST00000471523.1_1_1:155679570-155695881:+|nuORF;ENST00000462002.5_1_1:155679570-155696073:+|nuORF;nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3;ENSG00000132676|ENST00000368336|DAP3	ENST00000496863.5_1_1:155679570-155695280:+|nuORF	ENST00000496863.5_1_1:155679570-155695280:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	557.3101196289062	2	557.30821	1112.60187	2.1739	0.0012115	0.49164	0.000274	2.6655	0.0014855	557.3084004267201	116.64	1.3674	116.64	116.09	117.46	0					70	29	3	0	0	0	0.048552	2	13358	13337;13358		119.56	60.775	1	964600			10551	4160	8665	8675	11407;11408	11408					0.050069237196112226
FAYSAPTI	8	Unmodified	_FAYSAPTI_					0	0	0			REV__tr|A0A553SH14|A0A553SH14_NIACITryptophan-richsensoryproteinOS=NialliacirculansOX=1397GN=CEQ21_11910PE=3SV=1	REV__tr|A0A553SH14|A0A553SH14_NIACITryptophan-richsensoryproteinOS=NialliacirculansOX=1397GN=CEQ21_11910PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	435.87371826171875	2	435.223811	868.433069	0.84569	0.00036806	-2.9059	-0.0012647	-2.0602	-0.00089667	435.2226994068351	111.93	0.73741	110.42	110	110.74	-1.5111					15	13	2	0	0	0	0.028476	1	10302	10302		26.796	0	1	21212	+		10552	29763	8666	8676	11409	11409					-0.006409779139062266
FCAAPPLFPQ	10	Unmodified	_FCAAPPLFPQ_					0	0	0			REV__ENSG00000139352|ENST00000266744|ASCL1	REV__ENSG00000139352|ENST00000266744|ASCL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2957153320312	2	545.773145	1089.53174	-0.33146	-0.0001809	-3.3616	-0.0018347	-3.6931	-0.0020156	545.7718733739331	35.659	0.5549	35.659	35.429	35.984	0					20	11	3	0	0	0	0.027021	1	1799	1799		21.96	10.449	1	59875	+		10553	19606	8667	8677	11410	11410					-0.00944697940531114
FCAPTFHF	8	Unmodified	_FCAPTFHF_					0	0	0		ENST00000520201.5_1_8:42177053-42177326:+|nuORF	ENST00000520201.5_1_8:42177053-42177326:+|nuORF	ENST00000520201.5_1_8:42177053-42177326:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.26898193359375	2	485.218006	968.421459	-1.2241	-0.00059395	-0.27615	-0.00013399	-1.5002	-0.00072794	485.2176295167106	50.595	0.86779	47.422	47.205	48.072	-3.1734					30	16	3	0	0	0	0.028476	1	2926	2926		52.299	11.727	1	77911			10554	13100	8668	8678	11411	11411					-0.06401498208902012
FCARHLSSM	9	Unmodified	_FCARHLSSM_					0	0	0			REV__ENST00000482975.6_2_2:70508700-70508739:-|nuORF	REV__ENST00000482975.6_2_2:70508700-70508739:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.8043212890625	2	526.244229	1050.47391	0.26021	0.00013694	2.9181	0.0015356	3.1783	0.0016726	526.2448571409008	72.519	0.52036	72.519	72.125	72.645	0					17	12	2	0	0	0	0.027462	1	7021	7021		35.618	7.736	1	91356	+		10555	26515	8669	8679	11412	11412					-0.04931283137602804
FCCHCILFI	9	Unmodified	_FCCHCILFI_					0	0	0			REV__ENST00000225737.10_1_17:19809381-19809483:-|nuORF	REV__ENST00000225737.10_1_17:19809381-19809483:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.2962036132812	2	549.750301	1097.48605	1.8845	0.001036	-1.1047	-0.00060733	0.7798	0.0004287	549.7495372238388	107.72	2.662	107.72	107.02	109.68	0					114	61	2	0	0	0	0.027462	1	12260	12260		39.021	19.662	1	235700	+		10556	23762	8670	8680	11413	11413					-0.05879382718762827
FCEAHEELK	9	Unmodified	_FCEAHEELK_					0	0	0			REV__ENST00000538168.5_1_18:44253896-44254184:-|nuORF	REV__ENST00000538168.5_1_18:44253896-44254184:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.8445434570312	2	553.252774	1104.491	-0.69824	-0.00038631	-3.2529	-0.0017997	-3.9511	-0.002186	553.2508687170422	50.499	0.48677	50.499	50.288	50.775	0					14	10	2	0	0	0	0.027462	1	3853	3853		29.15	10.825	1	93096	+		10557	27320	8671	8681	11414	11414					-0.05707084050800404
FCEMGVLGSKP	11	Oxidation (M)	_FCEM(Oxidation (M))GVLGSKP_		FCEM(1)GVLGSKP		FCEM(60)GVLGSKP	0	0	1		ENST00000407418.7_1_22:39259026-39259239:-|nuORF	ENST00000407418.7_1_22:39259026-39259239:-|nuORF	ENST00000407418.7_1_22:39259026-39259239:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	592.2791137695312	2	592.277934	1182.54132	1.2906	0.00076441	0.82593	0.00048918	2.1166	0.0012536	592.2780681526771	145.32	1.0415	145.32	145.04	146.08	0					58	21	3	0	0	0	0.41398	1	16981	16981		60.118	7.1816	1	499550			10558	11493	8672	8682	11415	11415		323			-0.042652977172792816
FCFLPLSLET	10	Unmodified	_FCFLPLSLET_					0	0	0		SACS|p.V3288Tfs*46|1|0.07|ENSG00000151835|chr13:23334014-23334015|-/TGAAGGGATACTTTTTGTAAGTACGT|frameshift_variant;ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	SACS|p.V3288Tfs*46|1|0.07|ENSG00000151835|chr13:23334014-23334015|-/TGAAGGGATACTTTTTGTAAGTACGT|frameshift_variant	SACS|p.V3288Tfs*46|1|0.07|ENSG00000151835|chr13:23334014-23334015|-/TGAAGGGATACTTTTTGTAAGTACGT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	585.2973022460938	2	585.299193	1168.58383	-7.712	-0.0045139	4.3637	0.0025541	-3.3484	-0.0019598	585.3015077710636	157.9	1.5857	156.73	156.12	157.71	-1.1707					60	43	3	0	0	0	0.76627	1	13623	13623		23.042	1.0826	1	24039			10559	5587	8673	8683	11416	11416					0.0062842068261943496
FCFLVFFNV	9	Unmodified	_FCFLVFFNV_					0	0	0			REV__ENST00000256689.9_1_12:46754616-46754751:-|nuORF	REV__ENST00000256689.9_1_12:46754616-46754751:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	568.3125	2	568.285889	1134.55722	-0.82156	-0.00046688	-2.3148	-0.0013154	-3.1363	-0.0017823	568.2830909164502	88.875	0.35205	86.273	85.984	86.336	-2.6027					11	6	3	0	0	0	0.027462	1	7572	7572		26.796	3.7536	1	15397	+		10560	23895	8674	8684	11417	11417					-0.004672234180816304
FCFPARLTL	9	Unmodified	_FCFPARLTL_					0	0	0			REV__ENST00000318037.3_1_3:196230167-196230401:-|nuORF	REV__ENST00000318037.3_1_3:196230167-196230401:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	534.2911376953125	2	534.288963	1066.56337	1.9384	0.0010357	2.5782	0.0013775	4.5166	0.0024132	534.2902066276332	122.34	1.337	122.34	122.04	123.37	0					82	28	4	0	0	0	0.055627	1	14095	14095		115.49	8.4865	1	3180200	+		10561	24419	8675	8685	11418	11418					0.03275294813442997
FCFPARLTL	9	Unmodified	_FCFPARLTL_					0	0	0			REV__ENST00000318037.3_1_3:196230167-196230401:-|nuORF	REV__ENST00000318037.3_1_3:196230167-196230401:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	534.288963	1066.56337	-1.1634	-0.0006216	3.4106	0.0018223	2.2472	0.0012007	534.2906001979293	122.53	0.9883	122.31	122.07	123.06	-0.21803	0.019591	0.0011575	NaN	115.49	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52472	+		10562	24419	8675	8685							0.03275294813442997
FCFPARLTL	9	Unmodified	_FCFPARLTL_					0	0	0			REV__ENST00000318037.3_1_3:196230167-196230401:-|nuORF	REV__ENST00000318037.3_1_3:196230167-196230401:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	534.288963	1066.56337	2.1067	0.0011256	0.37925	0.00020263	2.486	0.0013282	534.2889698879707	123.28	0.87724	122.24	121.99	122.87	-1.0377	-0.047776	-0.0020818	NaN	115.49	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71650	+		10563	24419	8675	8685							0.03275294813442997
FCFPIIAGYL	10	Unmodified	_FCFPIIAGYL_					0	0	0			REV__tr|A0A7D6ZYA2|A0A7D6ZYA2_9CLOTDUF2975domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01375PE=4SV=1	REV__tr|A0A7D6ZYA2|A0A7D6ZYA2_9CLOTDUF2975domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01375PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.8173828125	2	572.298996	1142.58344	1.6579	0.0009488	-2.6645	-0.0015249	-1.0066	-0.00057608	572.297162907307	112.64	0.3121	112.64	112.39	112.7	0					13	6	3	0	0	0	0.027007	1	12809	12809		26.796	0	1	185320	+		10564	32363	8676	8686	11419	11419					0.017850457534223096
FCGLPSHVEL	10	Unmodified	_FCGLPSHVEL_					0	0	0		chr6:169179394-169182684|192|15.86|0.72|4.47|-|1|LINC02544,LINC02544|2	chr6:169179394-169182684|192|15.86|0.72|4.47|-|1|LINC02544,LINC02544|2	chr6:169179394-169182684|192|15.86|0.72|4.47|-|1|LINC02544,LINC02544|2	MULTI-MSMS	OvCa9_classI_Rep2	2	551.27099609375	2	551.273509	1100.53247	-0.34359	-0.00018941	-3.4582	-0.0019064	-3.8018	-0.0020958	551.2715063100039	55.708	1.14	52.904	52.482	53.622	-2.804					52	22	3	0	0	0	0.64063	1	3895	3895		37.159	1.5408	1	174720			10565	508	8677	8687	11420	11420					-0.013779032914726486
FCHAVKLIQ	9	Unmodified	_FCHAVKLIQ_					0	0	0			REV__ENST00000530248.2_1_8:10966093-10966243:-|nuORF	REV__ENST00000530248.2_1_8:10966093-10966243:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	529.7962646484375	2	529.794412	1057.57427	2.3241	0.0012313	2.157	0.0011428	4.4811	0.0023741	529.795452788595	76.091	0.68465	76.091	75.874	76.558	0					37	16	3	0	0	0	0.29717	1	7613	7613		63.306	4.5243	1	2731000	+		10566	27200	8678	8688	11421	11421					0.04778697187725811
FCHELFLYL	9	Unmodified	_FCHELFLYL_					0	0	0			REV__ENST00000415574.6_1_2:132263967-132275411:+|nuORF	REV__ENST00000415574.6_1_2:132263967-132275411:+|nuORF	MSMS	OvCa99_classI_Rep5	1	592.7949829101562	2	592.794078	1183.5736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.416	1	95.416	94.916	95.916	0								0	0	0	0.16962	1	10417	10417		52.299	2.7631	1		+		10567	25532	8679	8689	11422	11422					-0.010841422519661137
FCHLFLLF	8	Unmodified	_FCHLFLLF_					0	0	0		ENST00000380492.7_1_X:14937843-14937984:+|nuORF	ENST00000380492.7_1_X:14937843-14937984:+|nuORF	ENST00000380492.7_1_X:14937843-14937984:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.311279296875	2	520.275324	1038.53609	-0.89559	-0.00046596	-1.7499	-0.00091043	-2.6455	-0.0013764	520.2743629923574	85.337	1.1504	83.116	82.937	84.087	-2.2204					42	22	2	0	0	0	0.028476	1	4993	4993		43.626	0	1	374370			10568	11146	8680	8690	11423	11423					0.01836811273051353
FCIQAPAL	8	Unmodified	_FCIQAPAL_					0	0	0		ENST00000559212.1_1_15:69973631-69988065:+|nuORF	ENST00000559212.1_1_15:69973631-69988065:+|nuORF	ENST00000559212.1_1_15:69973631-69988065:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	431.72747802734375	2	431.728206	861.44186	1.8784	0.00081098	-3.8475	-0.0016611	-1.9691	-0.00085011	431.7264109975534	127.27	0.89854	127.27	127.05	127.95	0					37	19	2	0	0	0	0.69415	1	14748	14748		44.531	8.9128	1	454160			10569	13714	8681	8691	11424	11424					0.0055967245091324
FCKPHGLPF	9	Unmodified	_FCKPHGLPF_					0	0	0			REV__ENST00000313367.6_1_7:24932183-25019762:-|nuORF	REV__ENST00000313367.6_1_7:24932183-25019762:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	523.26953125	2	523.26803	1044.52151	1.3489	0.00070584	0.70162	0.00036714	2.0505	0.001073	523.2682579368221	111.72	1.4316	110.62	110.2	111.63	-1.1038					79	28	4	0	0	0	0.47884	1	8136	8136		44.531	0.15388	1	588020	+		10570	24369	8682	8692	11425	11425					0.0010273912489537906
FCLELNGL	8	Unmodified	_FCLELNGL_					0	0	0		nc|ENSG00000115540|Q9Y3A3-2|MOB4;nc|ENSG00000115540|Q9Y3A3-3|MOB4;ENSG00000115540|ENST00000323303|MOB4	nc|ENSG00000115540|Q9Y3A3-2|MOB4	nc|ENSG00000115540|Q9Y3A3-2|MOB4	MULTI-MSMS	OvCa99_classI_Rep5	1	454.7307434082031	2	454.730946	907.447339	2.3414	0.0010647	-3.2156	-0.0014623	-0.87426	-0.00039755	454.72932689058257	99.797	1.7057	99.797	99.529	101.23	0					84	40	4	0	0	0	0.45246	2	11050	11050;11084		82.305	0	1	13112000			10571	3105	8683	8693	11426;11427	11426					-0.010086487572721126
FCLKNCPPND	10	Unmodified	_FCLKNCPPND_					0	0	0		ENSG00000143341|ENST00000271588|HMCN1;nc|ENSG00000143341|Q96RW7-2|HMCN1	ENSG00000143341|ENST00000271588|HMCN1	ENSG00000143341|ENST00000271588|HMCN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.7616577148438	2	575.754627	1149.4947	1.2747	0.00073394	1.7859	0.0010282	3.0606	0.0017622	576.257757530731	148.97	0.77715	148.97	148.72	149.5	0					21	15	2	0	0	0	0.026843	1	17471	17471		31.634	3.5528	1	60979			10572	5038	8684	8694	11428	11428					-0.07406737548603815
FCLLLISSI	9	Unmodified	_FCLLLISSI_					0	0	0			REV__L1MC5_dup3481|chr4:19631159-19632103:+|1.0071503765471246|0.0011382453961836|9.79|425.0|44|1|anti-sense	REV__L1MC5_dup3481|chr4:19631159-19632103:+|1.0071503765471246|0.0011382453961836|9.79|425.0|44|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.2472229003906	2	504.793546	1007.57254	0.13879	7.0059E-05	3.099	0.0015644	3.2378	0.0016344	504.7949114989136	52.708	1.5259	52.708	52.083	53.609	0					67	30	5	0	0	0	0.027456	1	4130	4130		47.916	9.1095	1	3531500	+		10573	28424	8685	8695	11429	11429					0.06905643379127469
FCLLLSILV	9	Unmodified	_FCLLLSILV_					0	0	0			REV__ENST00000554641.1_1_14:61278837-61285503:+|nuORF	REV__ENST00000554641.1_1_14:61278837-61285503:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	510.8144226074219	2	510.811739	1019.60893	0.66578	0.00034009	2.7619	0.0014108	3.4277	0.0017509	510.81303107097773	129.05	1.0381	127.95	127.51	128.55	-1.1018					49	20	3	0	0	0	0.59983	1	10194	10194		31.955	6.3808	1	128600	+		10574	27531	8686	8696	11430	11430					0.09990520275835024
FCLLPPLP	8	Unmodified	_FCLLPPLP_					0	0	0		nc|ENSG00000012817|Q9BY66-2|KDM5D;ENSG00000012817|ENST00000317961|KDM5D;nc|ENSG00000012817|Q9BY66-3|KDM5D;KDM5C|p.L564Pfs*58|1|0.44|ENSG00000126012|chrX:53210471-53210472|-/A|frameshift_variant;KDM5C|p.V913Wfs*22|1|0.79|ENSG00000126012|chrX:53196930-53196930|C/-|frameshift_variant;nc|ENSG00000126012|P41229-4|KDM5C;nc|ENSG00000126012|P41229-3|KDM5C;KDM5C|p.P1479Qfs*65|1|0.22|ENSG00000126012|chrX:53193214-53193214|G/-|frameshift_variant;nc|ENSG00000126012|P41229-2|KDM5C;nc|ENSG00000126012|P41229-5|KDM5C;ENSG00000126012|ENST00000375401|KDM5C	nc|ENSG00000012817|Q9BY66-2|KDM5D	nc|ENSG00000012817|Q9BY66-2|KDM5D	MULTI-SECPEP	OvCa99_classI_Rep5	1	449.7056884765625	2	450.2566	898.498647	-0.023052	-1.0379E-05	-1.9973	-0.00089931	-2.0204	-0.00090969	450.25662817320455	38.946	0.35707	38.946	38.75	39.107	0					12	7	2	0	0	0	0.028476	1	2228	2228		24.504	0	1	22928			10575	976	8687	8697	11431	11431					0.045337200074413886
FCLQLKELL	9	Unmodified	_FCLQLKELL_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	OvCa99_classI_Rep5	1	553.8197631835938	2	553.817553	1105.62055	0.63065	0.00034926	4.2371	0.0023466	4.8677	0.0026958	553.8197247336428	67.191	0.3945	67.191	66.977	67.371	0					14	9	2	0	0	0	0.33652	1	6280	6280		58.782	2.0609	1	1838500	+		10576	22731	8688	8698	11432	11432					0.07196717299166266
FCLQWLLAL	9	Unmodified	_FCLQWLLAL_					0	0	0			REV__ENST00000265896.9_1_8:126015490-126015574:+|nuORF	REV__ENST00000265896.9_1_8:126015490-126015574:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	553.8390502929688	2	553.806988	1105.59942	-0.5213	-0.0002887	2.2621	0.0012527	1.7408	0.00096404	553.8079846278463	103.16	1.5725	101.7	101.27	102.84	-1.4578					93	29	5	0	0	0	0.027462	1	7255	7255		26.796	0	1	348160	+		10577	24038	8689	8699	11433	11433					0.050847519902845306
FCLTFVTAVD	10	Unmodified	_FCLTFVTAVD_					0	0	0			REV__ENSG00000197136|ENST00000355703|PCNX3	REV__ENSG00000197136|ENST00000355703|PCNX3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.3307495117188	2	558.275718	1114.53688	0.27271	0.00015225	3.0166	0.0016841	3.2893	0.0018363	558.2773138257804	82.475	1.3189	79.792	79.489	80.808	-2.6829					48	26	2	0	0	0	0.026802	1	6861	6861		26.693	1.1189	1	140870	+		10578	22895	8690	8700	11434	11434					-0.01580438868541023
FCLTLVLASF	10	Unmodified	_FCLTLVLASF_					0	0	0			REV__nc|ENSG00000164175|Q9UMX9-4|SLC45A2	REV__nc|ENSG00000164175|Q9UMX9-4|SLC45A2	MULTI-MSMS	OvCa9_classI_Rep2	2	557.3043823242188	2	557.304278	1112.594	0.76161	0.00042445	2.2529	0.0012555	3.0145	0.00168	557.305338519675	79.155	2.3119	77.415	76.512	78.824	-1.7398					80	45	2	0	0	0	0.48198	1	6610	6610		56.721	3.6321	1	417440	+		10579	20955	8691	8701	11435	11435					0.04221028407800986
FCLTLVLASF	10	Unmodified	_FCLTLVLASF_					0	0	0			REV__nc|ENSG00000164175|Q9UMX9-4|SLC45A2	REV__nc|ENSG00000164175|Q9UMX9-4|SLC45A2	MULTI-MSMS	OvCa9_classI_Rep3	3	557.3077392578125	2	557.304278	1112.594	-0.15901	-8.8615E-05	3.2091	0.0017884	3.0501	0.0016998	557.3059120634497	79.754	2.1377	77.414	76.902	79.039	-2.3399					93	41	3	0	0	0	0.46756	1	4310	4310		58.782	4.0056	1	880010	+		10580	20955	8691	8701	11436	11436					0.04221028407800986
FCLTYYYY	8	Unmodified	_FCLTYYYY_					0	0	0			REV__chr15:53523322-53540662|224|18.24|0.17|6.76|-|2|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|1	REV__chr15:53523322-53540662|224|18.24|0.17|6.76|-|2|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.8076782226562	2	568.243886	1134.47322	-0.31912	-0.00018134	2.9836	0.0016954	2.6645	0.0015141	568.2454439644288	71.21	1.0206	67.754	67.44	68.46	-3.4563					43	20	4	0	0	0	0.028476	1	5458	5458		46.766	5.3398	1	130960	+		10581	15921	8692	8702	11437	11437					-0.08863799305640896
FCLVTSEPPL	10	Unmodified	_FCLVTSEPPL_					0	0	0			REV__ENST00000229268.12_1_12:6975429-6975777:+|nuORF	REV__ENST00000229268.12_1_12:6975429-6975777:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	553.3093872070312	2	553.283543	1104.55253	-1.1289	-0.00062463	-3.7091	-0.0020522	-4.8381	-0.0026768	553.2827731739377	62.71	0.31356	59.966	59.795	60.108	-2.7444					7	5	2	0	0	0	0.026822	1	4709	4709		30.504	17.692	1	6834.5	+		10582	23782	8693	8703	11438	11438					0.004438476484892817
FCPAPVPYLD	10	Unmodified	_FCPAPVPYLD_					0	0	0			REV__ENSG00000198398|ENST00000354905|TMEM207	REV__ENSG00000198398|ENST00000354905|TMEM207	MULTI-SECPEP	OvCa9_classI_Rep3	3	560.2755126953125	2	561.270435	1120.52632	0.10122	5.6813E-05	-0.25384	-0.00014247	-0.15261	-8.5658E-05	561.7727041963673	106.84	0.93334	105.57	105.37	106.31	-1.267					23	18	2	0	0	0	0.026822	1	7628	7628		47.916	26.969	1	90333	+		10583	23016	8694	8704	11439	11439					-0.029124215229785477
FCPFCRLE	8	Unmodified	_FCPFCRLE_					0	0	0		ENST00000523182.5_1_8:37720415-37730726:-|nuORF;ENST00000522774.1_1_8:37728794-37730726:-|nuORF	ENST00000523182.5_1_8:37720415-37730726:-|nuORF	ENST00000523182.5_1_8:37720415-37730726:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	507.7317199707031	2	507.730423	1013.44629	0.87453	0.00044403	1.4644	0.0007435	2.3389	0.0011875	507.73107539480856	64.609	1.4672	61.616	61.09	62.557	-2.9933					46	28	2	0	0	0	0.73288	1	2529	2529		35.201	1.0282	1	54457			10584	13140	8695	8705	11440	11440					-0.05989186397812318
FCPGSQVA	8	Unmodified	_FCPGSQVA_					0	0	0			REV__PKD1|p.L2066V|1|0.95|ENSG00000008710|chr16:2108971-2108971|G/C|missense_variant	REV__PKD1|p.L2066V|1|0.95|ENSG00000008710|chr16:2108971-2108971|G/C|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	404.6873474121094	2	404.686539	807.358524	1.4768	0.00059762	-0.87064	-0.00035234	0.60612	0.00024529	404.68599544348376	52.708	0.65239	52.708	52.478	53.131	0					35	14	4	0	0	0	0.69415	1	4147	4147		44.531	0.41427	1	1214700	+		10585	29297	8696	8706	11441	11441					-0.052860639969367185
FCPYSFGDPDG	11	Unmodified	_FCPYSFGDPDG_					0	0	0		ENST00000521802.5_1_8:42112879-42123213:-|nuORF	ENST00000521802.5_1_8:42112879-42123213:-|nuORF	ENST00000521802.5_1_8:42112879-42123213:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	602.7388305664062	2	602.734414	1203.45428	1.5895	0.00095805	2.0748	0.0012505	3.6643	0.0022086	602.7355241910722	124.77	0.41647	124.77	124.65	125.07	0					14	8	2	0	0	0	0.69081	1	14417	14417		32.812	2.4947	1	198690			10586	13129	8697	8707	11442	11442					-0.1393138066737265
FCQEGQPHV	9	Unmodified	_FCQEGQPHV_					0	0	0		ENSG00000179632|ENST00000322428|MAF1	ENSG00000179632|ENST00000322428|MAF1	ENSG00000179632|ENST00000322428|MAF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.7843627929688	2	522.732009	1043.44946	-1.2932	-0.000676	3.0508	0.0015948	1.7576	0.00091877	523.2367959965736	65.863	0.14694	62.378	62.276	62.423	-3.4854					4	2	2	0	0	0	0.027462	1	4756	4756		35.618	5.3006	1	8540.4			10587	7837	8698	8708	11443	11443					-0.0705222001945458
FCRRKCRA	8	Unmodified	_FCRRKCRA_					0	0	0		ERC1-CACNA1C|23|fusion;ERC1-CACNA1C|37|fusion;ERC1-CACNA1C|9|fusion;ERC1-CACNA1C|18|fusion;ERC1-CACNA1C|11|fusion;ERC1-CACNA1C|17|fusion;ERC1-CACNA1C|14|fusion;ERC1-CACNA1C|35|fusion;ERC1-CACNA1C|33|fusion;ERC1-CACNA1C|39|fusion;ERC1-CACNA1C|25|fusion;ERC1-CACNA1C|5|fusion;ERC1-CACNA1C|43|fusion;ERC1-CACNA1C|38|fusion;ERC1-CACNA1C|44|fusion;ERC1-CACNA1C|45|fusion;ERC1-CACNA1C|31|fusion;ERC1-CACNA1C|32|fusion;ERC1-CACNA1C|40|fusion;ERC1-CACNA1C|30|fusion;ERC1-CACNA1C|34|fusion;ERC1-CACNA1C|36|fusion;ERC1-CACNA1C|41|fusion;ERC1-CACNA1C|8|fusion;ERC1-CACNA1C|22|fusion;ERC1-CACNA1C|19|fusion;ERC1-CACNA1C|46|fusion;ERC1-CACNA1C|6|fusion;ERC1-CACNA1C|3|fusion;ERC1-CACNA1C|1|fusion;ERC1-CACNA1C|4|fusion;ERC1-CACNA1C|42|fusion;ERC1-CACNA1C|13|fusion;ERC1-CACNA1C|29|fusion;ERC1-CACNA1C|12|fusion;ERC1-CACNA1C|2|fusion;ERC1-CACNA1C|10|fusion;ERC1-CACNA1C|16|fusion;ERC1-CACNA1C|20|fusion;ERC1-CACNA1C|26|fusion;ERC1-CACNA1C|21|fusion;ERC1-CACNA1C|15|fusion;ERC1-CACNA1C|24|fusion;ERC1-CACNA1C|27|fusion;ERC1-CACNA1C|7|fusion;ERC1-CACNA1C|28|fusion;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;CACNA1C|p.V1586Wfs*9|1|0.1|ENSG00000151067|chr12:2666770-2666770|C/-|frameshift_variant;CACNA1C|p.S1498Afs*17|1|0.18|ENSG00000151067|chr12:2664940-2664940|A/-|frameshift_variant;CACNA1C|p.I1373Sfs*65|1|0.06|ENSG00000151067|chr12:2651667-2651668|-/G|frameshift_variant;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C	ERC1-CACNA1C|23|fusion;nc|ENSG00000151067|Q13936-26|CACNA1C	ERC1-CACNA1C|23|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3119506835938	2	520.273655	1038.53276	0.96328	0.00050117	4.1367	0.0021522	5.1	0.0026534	520.2754575423056	85.049	0.24888	82.403	82.312	82.561	-2.6463					6	4	2	0	0	0	0.028476	1	7153	7153		35.201	4.6971	1	13523			10588	14314;15092	8699	8709	11444	11444					0.015032379474178015
FCRRMDVV	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))FCRRMDVV_					1	0	0			REV__L1PA2_dup23|chr1:43114528-43120516:-|1.3533449411662286|0.3152228216366226|2.1|404.0|250|2|anti-sense	REV__L1PA2_dup23|chr1:43114528-43120516:-|1.3533449411662286|0.3152228216366226|2.1|404.0|250|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.2603149414062	2	534.259879	1066.50521	-2.4566	-0.0013125	0.89943	0.00048053	-1.5572	-0.00083193	534.2602325774062	108.5	2.1566	106.78	106.37	108.52	-1.7256					88	41	3	0	0	0	0.65582	1	9989	9989		52.299	9.903	1	501350	+		10589	28479	8700	8710	11445	11445					-0.0253871010347666
FCSLFFLCF	9	Unmodified	_FCSLFFLCF_					0	0	0		L1MC5_dup3481|chr4:19631159-19632103:+|1.0071503765471246|0.0011382453961836|9.79|425.0|74|3|anti-sense	L1MC5_dup3481|chr4:19631159-19632103:+|1.0071503765471246|0.0011382453961836|9.79|425.0|74|3|anti-sense	L1MC5_dup3481|chr4:19631159-19632103:+|1.0071503765471246|0.0011382453961836|9.79|425.0|74|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	563.7600708007812	2	563.758649	1125.50275	1.716	0.00096742	-0.35102	-0.00019789	1.365	0.00076953	563.7583570645545	138.71	1.2531	138.71	138.35	139.61	0					59	25	4	0	0	0	0.44294	1	16236	16236		47.916	0.25827	1	791790			10590	14609	8701	8711	11446	11446					-0.054985585611575516
FCTILMIYIM	10	Unmodified	_FCTILMIYIM_					0	0	0			REV__tr|A0A553SIU1|A0A553SIU1_NIACIUndecaprenyl/decaprenyl-phosphatealpha-N-acetylglucosaminyl1-phosphatetransferaseOS=NialliacirculansOX=1397GN=CEQ21_15515PE=4SV=1	REV__tr|A0A553SIU1|A0A553SIU1_NIACIUndecaprenyl/decaprenyl-phosphatealpha-N-acetylglucosaminyl1-phosphatetransferaseOS=NialliacirculansOX=1397GN=CEQ21_15515PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	416.8793640136719	3	416.546075	1246.6164	0.0029106	1.2124E-06	-4.1216	-0.0017168	-4.1187	-0.0017156	416.5441386661464	25.298	0.30071	25.298	25.142	25.442	0					14	5	3	0	0	0	0.64697	1	554	554		36.447	11.321	1	46527	+		10591	29928	8702	8712	11447	11447					0.002951684895379003
FCVFYILY	8	Unmodified	_FCVFYILY_					0	0	0		tr|A0A553SSD5|A0A553SSD5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02925PE=4SV=1	tr|A0A553SSD5|A0A553SSD5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02925PE=4SV=1	tr|A0A553SSD5|A0A553SSD5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02925PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.3109741210938	2	534.267164	1066.51978	-1.5448	-0.00082531	-1.5365	-0.00082091	-3.0813	-0.0016462	534.765535982304	40.445	0.31649	37.491	37.263	37.58	-2.9541					8	5	2	0	0	0	0.028476	1	1717	1717		33.493	4.3434	1	6236.9			10592	34361	8703	8713	11448	11448					-0.010823146836855813
FCVGLRATL	9	Unmodified	_FCVGLRATL_					0	0	0		nc|ENSG00000181378|Q6ZU64-5|CFAP65;nc|ENSG00000181378|Q6ZU64-4|CFAP65;ENSG00000181378|ENST00000341552|CFAP65	nc|ENSG00000181378|Q6ZU64-5|CFAP65;ENSG00000181378|ENST00000341552|CFAP65	nc|ENSG00000181378|Q6ZU64-5|CFAP65	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.7809753417969	2	490.273312	978.532072	-0.11596	-5.6852E-05	0.85984	0.00042156	0.74389	0.00036471	490.2694174380925	56.023	1.6226	52.728	52.26	53.883	-3.2944					76	31	4	0	0	0	0.29717	1	3557	3557		63.306	7.8021	1	928060			10593	15207;7928	8704	8714	11449	11449					0.041947217793449454
FCVIGLNP	8	Unmodified	_FCVIGLNP_					0	0	0		ENST00000323851.11_1_8:134249992-134250097:-|nuORF	ENST00000323851.11_1_8:134249992-134250097:-|nuORF	ENST00000323851.11_1_8:134249992-134250097:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	431.7276611328125	2	431.728206	861.44186	1.8784	0.00081098	-3.8475	-0.0016611	-1.9691	-0.00085011	431.7264109975534	127.27	0.89854	127.27	127.05	127.95	0					37	19	2	0	0	0	0.72922	1	14773	14773		37.028	0	1	454160			10594	10393	8705	8715	11450	11450					0.005596724509246087
FCVKIANI	8	Unmodified	_FCVKIANI_					0	0	0		TAS2R41|p.W189Ffs*25|1|0.12|ENSG00000221855|chr7:143478437-143478438|-/TCTCAGGATTCATGGAGGATCTAAGTAGA|frameshift_variant;ENSG00000221855|ENST00000408916|TAS2R41	TAS2R41|p.W189Ffs*25|1|0.12|ENSG00000221855|chr7:143478437-143478438|-/TCTCAGGATTCATGGAGGATCTAAGTAGA|frameshift_variant	TAS2R41|p.W189Ffs*25|1|0.12|ENSG00000221855|chr7:143478437-143478438|-/TCTCAGGATTCATGGAGGATCTAAGTAGA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	455.2441101074219	2	454.257131	906.499709	0.49781	0.00022613	2.3816	0.0010818	2.8794	0.001308	454.25806982685594	57.994	0.33522	57.994	57.859	58.194	0					11	7	2	0	0	0	0.028476	1	4904	4904		19.36	0	1	181380			10595	9230	8706	8716	11451	11451					0.042719343763451434
FDADRRAPKL	10	Unmodified	_FDADRRAPKL_					0	0	0		nc|ENSG00000288658|A0A7I2V3R4|RNF228	nc|ENSG00000288658|A0A7I2V3R4|RNF228	nc|ENSG00000288658|A0A7I2V3R4|RNF228	MULTI-MSMS	OvCa9_classI_Rep3	3	594.8271484375	2	594.827829	1187.64111	-0.46602	-0.0002772	0.064254	3.822E-05	-0.40176	-0.00023898	594.8280468711656	76.9	1.7487	74.529	74.033	75.781	-2.3715					90	33	4	0	0	0	0.50999	1	3997	3997		52.937	6.9645	1	1276600			10596	15387	8707	8717	11452	11452					0.05479024003170707
FDAENDATI	9	Unmodified	_FDAENDATI_					0	0	0			REV__ENSG00000101782|ENST00000339486|RIOK3	REV__ENSG00000101782|ENST00000339486|RIOK3	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.7716979980469	2	498.219454	994.424355	-0.86567	-0.00043129	-3.8499	-0.0019181	-4.7155	-0.0023494	498.21529246584237	102.14	0.78191	100.61	100.37	101.15	-1.5211					27	14	3	0	0	0	0.027462	1	6985	6985		35.618	0	1	23191	+		10597	17518	8708	8718	11453	11453					-0.07307996341057788
FDAGMNELGK	10	Unmodified	_FDAGMNELGK_					0	0	0			REV__ENSG00000156222|ENST00000394573|SLC28A1	REV__ENSG00000156222|ENST00000394573|SLC28A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2944946289062	2	541.252774	1080.491	1.3358	0.00072302	2.0981	0.0011356	3.4339	0.0018586	541.2538321242472	98.225	0.12454	98.225	98.165	98.29	0					4	2	2	0	0	0	0.026849	1	10811	10811		25.574	3.6142	1	491710	+		10598	20468	8709	8719	11454	11454					-0.0460308405079104
FDALLGGLII	10	Unmodified	_FDALLGGLII_					0	0	0			REV__nc|ENSG00000146039|Q9Y2C5-3|SLC17A4	REV__nc|ENSG00000146039|Q9Y2C5-3|SLC17A4	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.3065185546875	2	516.310418	1030.60628	1.1932	0.00061605	-4.3944	-0.0022689	-3.2012	-0.0016528	516.3081135532377	129.4	1.0384	127.95	127.64	128.68	-1.4565					39	20	3	0	0	0	0.61209	1	12404	12404		40.573	1.3198	1	46274	+		10599	19993	8710	8720	11455	11455					0.0922038814253483
FDASAWQGDA	10	Unmodified	_FDASAWQGDA_					0	0	0			REV__ENSG00000101191|ENST00000395343|DIDO1	REV__ENSG00000101191|ENST00000395343|DIDO1	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.2883911132812	2	534.225071	1066.43559	2.1763	0.0011626	-4.2997	-0.002297	-2.1235	-0.0011344	534.2228041396068	106.06	0.43927	106.06	105.88	106.32	0					14	9	2	0	0	0	0.026681	1	11904	11904		44.377	0	1	257970	+		10600	17477	8711	8721	11456	11456					-0.09497174246916984
FDDDKFDI	8	Unmodified	_FDDDKFDI_					0	0	0		ENST00000546838.1_1_12:120947816-120954460:-|nuORF;ENSG00000110871|ENST00000288532|COQ5	ENST00000546838.1_1_12:120947816-120954460:-|nuORF	ENST00000546838.1_1_12:120947816-120954460:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	507.725830078125	2	507.724372	1013.43419	1.3594	0.00069019	0.48765	0.00024759	1.847	0.00093778	507.7244179856563	119.19	0.50877	119.19	118.96	119.47	0					20	10	3	0	0	0	0.50747	1	13690	13690		76.774	0	1	173010			10601	2799	8712	8722	11457	11457					-0.07198808335658669
FDDYGIPAD	9	Unmodified	_FDDYGIPAD_					0	0	0			REV__ENSG00000171132|ENST00000306156|PRKCE	REV__ENSG00000171132|ENST00000306156|PRKCE	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.273681640625	2	506.716547	1011.41854	2.5946	0.0013147	3.8631	0.0019575	6.4576	0.0032722	506.7184751622159	115.75	0.42139	115.75	115.49	115.91	0					13	8	2	0	0	0	0.027462	1	13234	13234		31.955	8.9124	1	93209	+		10602	21596	8713	8723	11458	11458					-0.08671094852707029
FDEDSSTML	9	Unmodified	_FDEDSSTML_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.7132568359375	2	522.713147	1043.41174	-0.05272	-2.7558E-05	-0.53549	-0.00027991	-0.58821	-0.00030746	522.7132725479615	122.75	1.437	121.38	121.06	122.5	-1.3666					72	28	4	0	0	0	0.38529	1	11594	11594		53.351	9.2347	1	212930	+		10603	20615	8714	8724	11459	11459					-0.108227757955774
FDEGSSKQSLT	11	Unmodified	_FDEGSSKQSLT_					0	0	0			REV__tr|A0A553SQQ4|A0A553SQQ4_NIACIAbortivephageresistanceproteinOS=NialliacirculansOX=1397GN=CEQ21_07115PE=4SV=1	REV__tr|A0A553SQQ4|A0A553SQQ4_NIACIAbortivephageresistanceproteinOS=NialliacirculansOX=1397GN=CEQ21_07115PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	598.836181640625	2	599.78295	1197.55135	0.021476	1.2881E-05	0.32522	0.00019506	0.3467	0.00020794	599.7830490311436	82.517	0.97615	79.834	79.635	80.612	-2.683					29	19	2	0	0	0	0.025418	1	6848	6848		26.063	0	1	56673	+		10604	30653	8715	8725	11460	11460					-0.03952695186717392
FDEKLNSL	8	Unmodified	_FDEKLNSL_					0	0	0		nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;PPP2R1A|p.M499*|1|0.2|ENSG00000105568|chr19:52221110-52221110|A/-|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B	nc|ENSG00000137713|P30154-4|PPP2R1B	nc|ENSG00000137713|P30154-4|PPP2R1B	MULTI-MSMS	OvCa99_classI_Rep5	1	483.25115966796875	2	483.250557	964.486562	1.4386	0.0006952	0.67448	0.00032594	2.1131	0.0010211	483.25076730864794	80.861	0.75697	80.861	80.615	81.372	0					45	17	3	0	0	0	0.00047197	1	8309	8309		205.58	48.253	1	3655800			10605	4608	8716	8726	11461	11461					0.002897747979545784
FDEKLNSL	8	Unmodified	_FDEKLNSL_					0	0	0		nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;PPP2R1A|p.M499*|1|0.2|ENSG00000105568|chr19:52221110-52221110|A/-|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B	nc|ENSG00000137713|P30154-4|PPP2R1B	nc|ENSG00000137713|P30154-4|PPP2R1B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	483.250557	964.486562	0.15241	7.3653E-05	-1.1517	-0.00055654	-0.99924	-0.00048289	483.24978237721	82.635	1.6317	81.037	80.488	82.12	-1.5988	0.17084	-0.0014597	NaN	205.58	48	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70092			10606	4608	8716	8726							0.002897747979545784
FDEKLNSL	8	Unmodified	_FDEKLNSL_					0	0	0		nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;PPP2R1A|p.M499*|1|0.2|ENSG00000105568|chr19:52221110-52221110|A/-|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B	nc|ENSG00000137713|P30154-4|PPP2R1B	nc|ENSG00000137713|P30154-4|PPP2R1B	MULTI-MATCH	OvCa9_classI_Rep3	3		2	483.250557	964.486562	-1.1249	-0.00054361	0.76296	0.0003687	-0.36194	-0.00017491	483.25068900699273	83.008	1.1005	80.712	80.431	81.531	-2.2963	-0.15348	0.00039076	NaN	205.58	64	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180700			10607	4608	8716	8726							0.002897747979545784
FDEKLNSL	8	Unmodified	_FDEKLNSL_					0	0	0		nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;PPP2R1A|p.M499*|1|0.2|ENSG00000105568|chr19:52221110-52221110|A/-|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B	nc|ENSG00000137713|P30154-4|PPP2R1B	nc|ENSG00000137713|P30154-4|PPP2R1B	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	483.250557	964.486562	-0.058315	-2.8181E-05	-0.53564	-0.00025885	-0.59395	-0.00028703	483.250083487008	83.516	0.87523	80.853	80.583	81.458	-2.6629	-0.013021	-0.00086434	NaN	205.58	32	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191030			10608	4608	8716	8726							0.002897747979545784
FDEMSWITE	9	Unmodified	_FDEMSWITE_					0	0	0			REV__tr|A0A553SKF3|A0A553SKF3_NIACIRegulatorOS=NialliacirculansOX=1397GN=CEQ21_18505PE=4SV=1	REV__tr|A0A553SKF3|A0A553SKF3_NIACIRegulatorOS=NialliacirculansOX=1397GN=CEQ21_18505PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.8331909179688	2	579.244615	1156.47468	-0.26962	-0.00015617	-2.1527	-0.0012469	-2.4223	-0.0014031	579.2432150427884	32.279	0.1985	32.279	32.154	32.353	0					5	3	2	0	0	0	0.027448	1	1380	1380		53.351	12.573	1	17745	+		10609	30119	8717	8727	11462	11462					-0.09730210007546702
FDENDELIEN	10	Unmodified	_FDENDELIEN_					0	0	0		ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	MULTI-SECPEP	OvCa99_classI_Rep5	1	619.8282470703125	2	619.26459	1236.51463	0.81179	0.00050272	1.3046	0.0008079	2.1164	0.0013106	619.7672393697903	156.57	0.15106	156.57	156.45	156.6	0					4	2	2	0	0	0	0.026968	1	18346	18346		29.17	7.2102	1	13934			10610	7498	8718	8728	11463	11463					-0.0941699180325486
FDFGKPIVI	9	Unmodified	_FDFGKPIVI_					0	0	0			REV__XRCC5-VWA3B|1|fusion	REV__XRCC5-VWA3B|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.2973022460938	2	518.29731	1034.58007	-0.7282	-0.00037742	-4.0478	-0.002098	-4.776	-0.0024754	518.2952267332782	93.923	2.6605	91.416	91.171	93.831	-2.5072					159	53	5	0	0	0	0.38529	1	8187	8187		53.351	2.016	1	7836100	+		10611	21390	8719	8729	11464	11464					0.06416118971037577
FDFSYDLNL	9	Unmodified	_FDFSYDLNL_					0	0	0		ENSG00000149131|ENST00000278407|SERPING1;nc|ENSG00000149131|P05155-3|SERPING1;nc|ENSG00000149131|P05155-2|SERPING1;ENST00000528996.1_1_11:57374185-57382051:+|nuORF	ENSG00000149131|ENST00000278407|SERPING1	ENSG00000149131|ENST00000278407|SERPING1	MULTI-MSMS	OvCa99_classI_Rep5	1	567.2616577148438	2	567.261122	1132.50769	2.5982	0.0014739	-2.7996	-0.0015881	-0.20138	-0.00011424	567.2593337675399	121.68	0.88329	121.68	121.34	122.22	0					50	18	4	0	0	0	0.27001	1	13987	13987		66.429	2.222	1	1472300			10612	5443	8720	8730	11465	11465					-0.05326259893195129
FDGTRLKR	8	Unmodified	_FDGTRLKR_					0	0	0			REV__ENST00000479159.1_1_1:173793119-173793796:-|nuORF	REV__ENST00000479159.1_1_1:173793119-173793796:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.7533874511719	2	496.785433	991.556313	-0.24621	-0.00012231	0.15913	7.9051E-05	-0.087087	-4.3263E-05	496.78522879590236	56.561	0.66429	56.561	56.34	57.004	0					37	15	4	0	0	0	0.028476	1	4687	4687		44.117	16.235	1	980920	+		10613	26430	8721	8731	11466	11466					0.0601969825723927
FDHKLSIA	8	Unmodified	_FDHKLSIA_					0	0	0		sp|P16728|TRX2_HCMVATriplexcapsidprotein2OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRX2PE=1SV=1;sp|F5HIN9|TRX2_HCMVMTriplexcapsidprotein2OS=Humancytomegalovirus(strainMerlin)OX=295027GN=TRX2PE=3SV=1	sp|P16728|TRX2_HCMVATriplexcapsidprotein2OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRX2PE=1SV=1	sp|P16728|TRX2_HCMVATriplexcapsidprotein2OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRX2PE=1SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	465.7978515625	2	465.75581	929.497067	-0.48704	-0.00022684	-1.2259	-0.00057098	-1.713	-0.00079782	465.75604768619684	77.404	0.93867	75.614	74.998	75.937	-1.7894					47	17	3	0	0	0	0.028476	1	6427	6427		45.952	16.11	1	47673			10614	32880	8722	8732	11467	11467					0.02949802243040267
FDHLYKVL	8	Unmodified	_FDHLYKVL_					0	0	0			REV__ENST00000315183.11_2_16:24788292-24788535:+|nuORF	REV__ENST00000315183.11_2_16:24788292-24788535:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.2677001953125	2	517.78711	1033.55967	-1.2197	-0.00063154	2.9258	0.0015149	1.7061	0.00088339	517.7877123369971	54.408	0.46084	51.161	50.979	51.439	-3.2474					10	8	2	0	0	0	0.028476	1	3358	3358		31.955	12.595	1	9520.6	+		10615	24393	8723	8733	11468	11468					0.04422948311230357
FDIITQYRA	9	Unmodified	_FDIITQYRA_					0	0	0		ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.8106689453125	2	563.798206	1125.58186	2.7168	0.0015317	3.585	0.0020212	6.3018	0.0035529	564.3017126136765	106.56	0.79494	106.56	105.92	106.72	0					27	17	2	0	0	0	0.027462	1	11935	11935		32.812	3.6629	1	514960			10616	9125	8724	8734	11469	11469					0.024091279889944417
FDIMLNWLN	9	Oxidation (M)	_FDIM(Oxidation (M))LNWLN_		FDIM(1)LNWLN		FDIM(77)LNWLN	0	0	1			REV__tr|A0A553SSW5|A0A553SSW5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03830PE=4SV=1	REV__tr|A0A553SSW5|A0A553SSW5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03830PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	591.2899169921875	2	591.286617	1180.55868	1.8618	0.0011009	2.7693	0.0016374	4.6311	0.0027383	591.2880613245547	126.3	0.74163	126.3	126.04	126.78	0					36	15	3	0	0	0	0.19758	1	14601	14601		76.774	7.1465	1	1122700	+		10617	30888	8725	8735	11470	11470		684			-0.02437634119996801
FDIPPQEIL	9	Unmodified	_FDIPPQEIL_					0	0	0		ENSG00000148175|ENST00000286713|STOM	ENSG00000148175|ENST00000286713|STOM	ENSG00000148175|ENST00000286713|STOM	MULTI-MSMS	OvCa99_classI_Rep5	1	536.29296875	2	536.289682	1070.56481	0.3323	0.00017821	-0.33691	-0.00018068	-0.00461	-2.4723E-06	536.2893178081741	101.75	1.3212	101.75	101.44	102.76	0					69	30	4	0	0	0	0.11471	1	11326	11326		93.195	10.445	1	2288700			10618	5389	8726	8736	11471	11471					0.0323520738318166
FDIPPQEIL	9	Unmodified	_FDIPPQEIL_					0	0	0		ENSG00000148175|ENST00000286713|STOM	ENSG00000148175|ENST00000286713|STOM	ENSG00000148175|ENST00000286713|STOM	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	536.289682	1070.56481	-1.4189	-0.00076094	-4.5338	-0.0024314	-5.9526	-0.0031923	536.2864812908358	104	0.15791	101.88	101.75	101.9	-2.1192	0.064206	-0.0041523	NaN	93.195	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7086.8			10619	5389	8726	8736							0.0323520738318166
FDISRPETL	9	Unmodified	_FDISRPETL_					0	0	0		ENSG00000108830|ENST00000587250|RND2;ENSG00000115963|ENST00000263895|RND3	ENSG00000108830|ENST00000587250|RND2;ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.8270874023438	2	539.282389	1076.55022	1.8937	0.0010212	3.4345	0.0018522	5.3282	0.0028734	539.2839988247331	79.467	1.7106	79.467	79.16	80.871	0					70	41	2	0	0	0	0.027459	1	8144	8144		44.377	0	1	965890			10620	2680;3142	8727	8737	11472	11472					0.01501135235048423
FDIVPSPNF	9	Unmodified	_FDIVPSPNF_					0	0	0		ENSG00000254656|ENST00000649591|RTL1	ENSG00000254656|ENST00000649591|RTL1	ENSG00000254656|ENST00000649591|RTL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.261474609375	2	518.260925	1034.5073	1.7084	0.00088539	1.3403	0.00069464	3.0487	0.00158	518.2614038006194	129.85	2.8637	128.39	126.95	129.81	-1.4565					113	57	4	0	0	0	0.48324	1	12427	12427		44.117	0	1	556110			10621	9449	8728	8738	11473	11473					-0.00857634822386899
FDKFANIV	8	Unmodified	_FDKFANIV_					0	0	0		ENSG00000104689|ENST00000221132|TNFRSF10A	ENSG00000104689|ENST00000221132|TNFRSF10A	ENSG00000104689|ENST00000221132|TNFRSF10A	MULTI-MSMS	OvCa99_classI_Rep5	1	477.25689697265625	2	477.258185	952.501818	2.3348	0.0011143	-4.0505	-0.0019331	-1.7157	-0.00081883	477.2560991854673	82.468	0.64236	82.468	82.181	82.824	0					34	14	3	0	0	0	0.31378	1	8558	8558		104.75	25.296	1	1224200			10622	2386	8729	8739	11474	11474					0.023666863858124998
FDKGKKLNR	9	Unmodified	_FDKGKKLNR_					0	0	0			REV__tr|A0A553SMF7|A0A553SMF7_NIACIBeta-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_22515PE=3SV=1	REV__tr|A0A553SMF7|A0A553SMF7_NIACIBeta-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_22515PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	553.8316040039062	2	553.327465	1104.64038	0.35274	0.00019518	1.807	0.00099986	2.1597	0.001195	553.3283407030782	163.74	0.31497	163.74	163.63	163.94	0					21	12	2	0	0	0	0.67509	1	19131	19131		23.042	1.0826	1	44656	+		10623	30324	8730	8740	11475	11475					0.09224229354117597
FDKLNYSG	8	Unmodified	_FDKLNYSG_					0	0	0			REV__nc|ENSG00000162398|Q3ZCV2-2|CIMAP2	REV__nc|ENSG00000162398|Q3ZCV2-2|CIMAP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.2315979003906	2	472.229625	942.444697	1.6251	0.0007674	-2.0313	-0.00095925	-0.40627	-0.00019185	472.22856420264725	140.62	0.97655	139.13	138.81	139.78	-1.4952					35	18	3	0	0	0	0.74229	1	13732	13732		30.504	1.3541	1	65762	+		10624	20730	8731	8741	11476	11476					-0.028827808905703023
FDKLNYSG	8	Unmodified	_FDKLNYSG_					0	0	0			REV__nc|ENSG00000162398|Q3ZCV2-2|CIMAP2	REV__nc|ENSG00000162398|Q3ZCV2-2|CIMAP2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	472.229625	942.444697	-1.0651	-0.00050296	0.80553	0.00038039	-0.25954	-0.00012256	472.22985352227573	139.42	1.0815	139.19	138.91	139.99	-0.22697	0.052233	0.0011796	NaN	30.504	31	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32183	+		10625	20730	8731	8741							-0.028827808905703023
FDKLNYSG	8	Unmodified	_FDKLNYSG_					0	0	0			REV__nc|ENSG00000162398|Q3ZCV2-2|CIMAP2	REV__nc|ENSG00000162398|Q3ZCV2-2|CIMAP2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	472.229625	942.444697	-1.4227	-0.00067185	2.3846	0.0011261	0.96191	0.00045424	472.230027099704	140.13	0.69016	139.09	138.89	139.58	-1.0339	-0.043797	0.002671	NaN	30.504	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21820	+		10626	20730	8731	8741							-0.028827808905703023
FDKMFLKPLL	10	Unmodified	_FDKMFLKPLL_					0	0	0			REV__ENST00000369248.8_1_10:116605772-116605838:+|nuORF	REV__ENST00000369248.8_1_10:116605772-116605838:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	417.91046142578125	3	417.91051	1250.7097	-1.7633	-0.00073688	1.8055	0.00075454	0.042254	1.7658E-05	417.91121073978496	35.511	1.2418	32.801	32.553	33.795	-2.7097					63	24	4	0	0	0	0.73378	1	1440	1440		31.634	8.1116	1	264540	+		10627	24937	8732	8742	11477	11477					0.09437552258668802
FDKPECGEMN	10	Unmodified	_FDKPECGEMN_					0	0	0		ENST00000590648.5_1_4:159080678-159080732:-|nuORF	ENST00000590648.5_1_4:159080678-159080732:-|nuORF	ENST00000590648.5_1_4:159080678-159080732:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.81689453125	2	585.233724	1168.45289	1.032	0.00060398	1.5518	0.00090816	2.5838	0.0015121	585.2344801833814	109.39	0.70911	109.39	109.15	109.86	0					34	15	3	0	0	0	0.026694	1	12373	12373		63.534	19.417	1	770450			10628	14111	8733	8743	11478	11478					-0.12459338027747435
FDKTEELKKRL	11	Unmodified	_FDKTEELKKRL_					0	0	0		ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4	ENSG00000134744|ENST00000257177|TUT4	ENSG00000134744|ENST00000257177|TUT4	MULTI-SECPEP	OvCa99_classI_Rep5	1	469.593505859375	3	469.604915	1405.79291	-0.28249	-0.00013266	-0.88625	-0.00041619	-1.1687	-0.00054885	469.6046976726082	48.608	0.17396	48.608	48.501	48.675	0					7	3	3	0	0	0	0.025864	1	3586	3586		35.178	15.551	1	305920			10629	4322	8734	8744	11479	11479					0.10624960240215842
FDKVFPALV	9	Unmodified	_FDKVFPALV_					0	0	0		ENSG00000167910|ENST00000301645|CYP7A1	ENSG00000167910|ENST00000301645|CYP7A1	ENSG00000167910|ENST00000301645|CYP7A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.2962036132812	2	518.29731	1034.58007	-0.7282	-0.00037742	-4.0478	-0.002098	-4.776	-0.0024754	518.2952267332782	93.923	2.6605	91.416	91.171	93.831	-2.5072					159	53	5	0	0	0	0.38529	1	8210	8210		53.351	2.016	1	7836100			10630	6849	8735	8745	11480	11480					0.06416118971037577
FDKYDTILV	9	Unmodified	_FDKYDTILV_					0	0	0		nc|ENSG00000152670|Q9NQI0-3|DDX4;nc|ENSG00000152670|Q9NQI0-2|DDX4;nc|ENSG00000152670|Q9NQI0-4|DDX4;ENSG00000152670|ENST00000505374|DDX4	nc|ENSG00000152670|Q9NQI0-3|DDX4	nc|ENSG00000152670|Q9NQI0-3|DDX4	MULTI-MSMS	OvCa99_classI_Rep5	1	557.2931518554688	2	557.294965	1112.57538	2.0933	0.0011666	-4.3174	-0.0024061	-2.2241	-0.0012395	557.2924502535343	134.75	1.4024	134.75	134.47	135.88	0					59	30	3	0	0	0	0.46377	1	15687	15687		45.952	0	1	485650			10631	5636	8736	8746	11481	11481					0.02359190037600456
FDLCSTYIQL	10	Unmodified	_FDLCSTYIQL_					0	0	0		ENST00000417191.2_1_1:149949455-149982582:-|nuORF	ENST00000417191.2_1_1:149949455-149982582:-|nuORF	ENST00000417191.2_1_1:149949455-149982582:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	601.78955078125	2	601.791732	1201.56891	1.1486	0.00069119	-1.9618	-0.0011806	-0.81329	-0.00048943	601.7903119027663	153.76	0.72375	153.76	153.5	154.22	0					31	14	3	0	0	0	0.45822	1	18017	18017		60.118	3.3972	1	129270			10632	11618	8737	8747	11482	11482					-0.0238107118541393
FDLCWLIVF	9	Unmodified	_FDLCWLIVF_					0	0	0		L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|259|2|anti-sense	L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|259|2|anti-sense	L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|259|2|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	578.30322265625	2	578.298996	1154.58344	1.6656	0.0009632	2.8514	0.001649	4.517	0.0026122	578.3004581589761	134.09	0.51993	134.09	133.86	134.38	0					28	10	3	0	0	0	0.27546	1	15616	15616		65.803	12.452	1	393490			10633	14654	8738	8748	11483	11483					0.012330457534062589
FDLDCPINRL	10	Unmodified	_FDLDCPINRL_					0	0	0			REV__nc|ENSG00000288705|P35504-2|UGT1A5	REV__nc|ENSG00000288705|P35504-2|UGT1A5	MULTI-MSMS	OvCa99_classI_Rep5	1	603.3062133789062	2	603.302798	1204.59104	2.1249	0.0012819	0.52319	0.00031564	2.648	0.0015976	603.8046381545558	112.99	3.5867	112.99	111.16	114.74	0					164	80	3	0	0	0	0.6104	1	12798	12798		40.778	1.972	1	1182000	+		10634	29210	8739	8749	11484	11484					-0.003068467169896394
FDLLFPYI	8	Unmodified	_FDLLFPYI_					0	0	0			REV__L1PA2_dup23|chr1:43114528-43120516:-|1.3533449411662286|0.3152228216366226|2.1|404.0|197|1|anti-sense	REV__L1PA2_dup23|chr1:43114528-43120516:-|1.3533449411662286|0.3152228216366226|2.1|404.0|197|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.3285522460938	2	514.278586	1026.54262	-0.23875	-0.00012278	1.2047	0.00061954	0.96593	0.00049676	514.7801019722731	70.528	0.55324	70.528	70.246	70.8	0					20	13	2	0	0	0	0.028476	1	6797	6797		39.021	14.819	1	332840	+		10635	15919	8740	8750	11485	11485					0.03041027705421584
FDLLTLRDW	9	Unmodified	_FDLLTLRDW_					0	0	0			REV__ENST00000503808.5_1_4:57204874-57250274:-|nuORF	REV__ENST00000503808.5_1_4:57204874-57250274:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	589.8095092773438	2	589.813856	1177.61316	0.084939	5.0098E-05	2.2877	0.0013493	2.3727	0.0013994	589.8152536393142	70.859	3.0313	70.859	70.369	73.4	0					178	75	5	0	0	0	0.12515	1	6914	6914		90.37	30.252	1	75284000	+		10636	26850	8741	8751	11486	11486					0.031457010230724336
FDLNCMLSK	9	Unmodified	_FDLNCMLSK_					0	0	0			REV__ENST00000422060.2_1_7:5161504-5161795:-|nuORF	REV__ENST00000422060.2_1_7:5161504-5161795:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	535.757568359375	2	535.754095	1069.49364	1.3044	0.00069884	2.382	0.0012762	3.6864	0.001975	535.7552179660204	149.79	1.3499	149.79	149.44	150.79	0					45	26	3	0	0	0	0.48047	1	17545	17545		44.377	0.26039	1	297090	+		10637	25615	8742	8752	11487	11487					-0.03832951917502214
FDLNHFSGV	9	Unmodified	_FDLNHFSGV_					0	0	0		ENSG00000086570|ENST00000261800|FAT2;FAT2|p.Y3462Tfs*16|1|0.49|ENSG00000086570|chr5:151525891-151525891|G/-|frameshift_variant;FAT2|p.T2083Sfs*59|1|0.04|ENSG00000086570|chr5:151544880-151544881|-/CTCCTCCATCCCGA|frameshift_variant	ENSG00000086570|ENST00000261800|FAT2	ENSG00000086570|ENST00000261800|FAT2	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.3192138671875	2	518.248349	1034.48214	-0.34626	-0.00017945	2.4266	0.0012576	2.0804	0.0010781	518.7483770290676	94.281	0.50906	92.385	92.102	92.612	-1.8956					11	9	2	0	0	0	0.027462	1	6058	6058		35.618	0	1	24442			10638	1752	8743	8753	11488	11488					-0.03371689624964347
FDLRDLVKE	9	Unmodified	_FDLRDLVKE_					0	0	0			REV__RMDN3|p.D401Pfs*16|1|0.2|ENSG00000137824|chr15:40737651-40737652|-/AAGTCATGAAGGCCAGTGAAACGTGG|frameshift_variant	REV__RMDN3|p.D401Pfs*16|1|0.2|ENSG00000137824|chr15:40737651-40737652|-/AAGTCATGAAGGCCAGTGAAACGTGG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	567.81005859375	2	567.811313	1133.60807	0.016962	9.6314E-06	-0.19743	-0.0001121	-0.18047	-0.00010247	567.811208678959	114.23	1.3057	113.18	112.79	114.09	-1.055					67	25	3	0	0	0	0.51865	1	8442	8442		40.778	6.6056	1	291700	+		10639	19485	8744	8754	11489	11489					0.04661397160475644
FDLSLIVRGPY	11	Unmodified	_FDLSLIVRGPY_					0	0	0			REV__nc|ENSG00000142185|O94759-2|TRPM2	REV__nc|ENSG00000142185|O94759-2|TRPM2	MULTI-MSMS	OvCa99_classI_Rep5	1	427.240478515625	3	427.239684	1278.69722	-0.057886	-2.4731E-05	0.8709	0.00037208	0.81302	0.00034735	427.2399971634606	47.494	1.8194	47.494	47.076	48.895	0					113	41	5	0	0	0	0.54114	1	3401	3401		50.034	2.074	1	6261900	+		10640	19772	8745	8755	11490	11490					0.0690223211997818
FDLTIRRF	8	Unmodified	_FDLTIRRF_					0	0	0		tr|A0A553SPJ4|A0A553SPJ4_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26530PE=4SV=1	tr|A0A553SPJ4|A0A553SPJ4_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26530PE=4SV=1	tr|A0A553SPJ4|A0A553SPJ4_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26530PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.348876953125	2	534.303458	1066.59236	-1.3441	-0.00071815	1.3748	0.00073457	0.030732	1.642E-05	534.3038852860702	94.002	0.95888	91.495	91.212	92.171	-2.5072					27	19	2	0	0	0	0.028476	1	8294	8294		40.573	16.37	1	66746			10641	34052	8746	8756	11491	11491					0.061731554340894945
FDLTKSYLD	9	Unmodified	_FDLTKSYLD_					0	0	0		ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08|DNAH12;nc|ENSG00000174844|Q6ZR08-3|DNAH12;nc|ENSG00000174844|Q6ZR08-2|DNAH12	ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08-2|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.3023681640625	2	551.276772	1100.53899	0.65735	0.00036238	0.14451	7.9664E-05	0.80186	0.00044204	551.2761681036764	142.01	0.60164	142.01	141.83	142.44	0					15	11	2	0	0	0	0.027441	1	16598	16598		49.442	0	1	28233			10642	7498;15186	8747	8757	11492	11492					-0.0072568685909573105
FDMIEKGQEL	10	Oxidation (M)	_FDM(Oxidation (M))IEKGQEL_		FDM(1)IEKGQEL		FDM(43)IEKGQEL	0	0	1			REV__tr|A0A7D6VT67|A0A7D6VT67_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04140PE=4SV=1	REV__tr|A0A7D6VT67|A0A7D6VT67_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04140PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	613.2962036132812	2	613.292096	1224.56964	1.7598	0.0010793	3.1013	0.001902	4.8611	0.0029813	613.2935666025418	138.15	0.71046	138.15	137.93	138.64	0					37	14	4	0	0	0	0.59317	1	16122	16122		42.864	7.246	1	266580	+		10643	31577	8748	8758	11493	11493		701			-0.03366276536348778
FDNFAIVRRLL	11	Unmodified	_FDNFAIVRRLL_					0	0	0		tr|A0A7D6VS55|A0A7D6VS55_9CLOTSmallbasicfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14660PE=3SV=1	tr|A0A7D6VS55|A0A7D6VS55_9CLOTSmallbasicfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14660PE=3SV=1	tr|A0A7D6VS55|A0A7D6VS55_9CLOTSmallbasicfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14660PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	455.26727294921875	3	455.266345	1362.7772	0.58204	0.00026498	3.7223	0.0016946	4.3043	0.0019596	455.26803080325766	61.062	0.83347	57.632	57.345	58.178	-3.43					35	16	4	0	0	0	0.026277	1	4229	4229		23.378	5.5448	1	91846			10644	34990	8749	8759	11494	11494					0.11032718513843065
FDNFAIVRRLL	11	Unmodified	_FDNFAIVRRLL_					0	0	0		tr|A0A7D6VS55|A0A7D6VS55_9CLOTSmallbasicfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14660PE=3SV=1	tr|A0A7D6VS55|A0A7D6VS55_9CLOTSmallbasicfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14660PE=3SV=1	tr|A0A7D6VS55|A0A7D6VS55_9CLOTSmallbasicfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14660PE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		3	455.266345	1362.7772	0.41991	0.00019117	7.3934	0.003366	7.8133	0.0035571	455.26989405526155	57.782	0.50344	57.782	57.438	57.941	0	0.075318	0.0046008	NaN	25.892	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171630			10645	34990	8749	8759							0.11032718513843065
FDPETGYQL	9	Unmodified	_FDPETGYQL_					0	0	0			REV__tr|A0A553SM10|A0A553SM10_NIACIAECfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_21695PE=3SV=1	REV__tr|A0A553SM10|A0A553SM10_NIACIAECfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_21695PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.7901611328125	2	535.245472	1068.47639	0.18008	9.6389E-05	-1.1131	-0.0005958	-0.93306	-0.00049941	535.2451697396667	62.56	0.20244	62.56	62.418	62.621	0					5	4	2	0	0	0	0.02744	1	5568	5568		62.107	0	1	87303	+		10646	30286	8750	8760	11495	11495					-0.05510832927279807
FDPKANKLI	9	Unmodified	_FDPKANKLI_					0	0	0			REV__tr|A0A7D6ZIF5|A0A7D6ZIF5_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03990PE=3SV=1	REV__tr|A0A7D6ZIF5|A0A7D6ZIF5_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03990PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3037109375	2	523.305667	1044.59678	-0.69596	-0.0003642	-3.2951	-0.0017244	-3.9911	-0.0020886	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.62352	1	13893	13893		29.15	1.2673	1	130240	+		10647	32053	8751	8761	11496	11496					0.0762661985700106
FDPPRQENET	10	Unmodified	_FDPPRQENET_					0	0	0		nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	nc|ENSG00000198788|Q02817|MUC2	MULTI-MSMS	OvCa99_classI_Rep5	1	411.5229797363281	3	411.52292	1231.54693	3.0776	0.0012665	-2.5513	-0.0010499	0.5263	0.00021659	411.5217349529892	76.674	1.0159	76.674	76.365	77.381	0					68	24	4	0	0	0	0.63752	1	7740	7740		37.508	1.1905	1	2798200			10648	15261	8752	8762	11497	11497					-0.05958159609622271
FDPSRNCSI	9	Unmodified	_FDPSRNCSI_					0	0	0			REV__ENST00000469606.5_1_1:212126007-212139828:-|nuORF	REV__ENST00000469606.5_1_1:212126007-212139828:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.7932739257812	2	519.737291	1037.46003	1.9657	0.0010216	0.89881	0.00046715	2.8645	0.0014888	519.7374900090188	106.49	0.66266	106.49	106.05	106.72	0					21	14	2	0	0	0	0.027462	1	11981	11981		34.173	7.3764	1	223660	+		10649	26246	8753	8763	11498	11498					-0.05720237365039793
FDPTHGMPGL	10	Unmodified	_FDPTHGMPGL_					0	0	0			REV__ENST00000583254.1_1_17:8137927-8138020:-|nuORF	REV__ENST00000583254.1_1_17:8137927-8138020:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.818603515625	2	536.250034	1070.48552	0.31515	0.000169	2.8334	0.0015194	3.1485	0.0016884	536.2511763031745	63.024	0.75345	63.024	62.816	63.57	0					46	18	5	0	0	0	0.027021	1	5634	5634		29.15	11.785	1	558380	+		10650	27836	8754	8764	11499	11499					-0.04690762842596996
FDPTLYDVK	9	Unmodified	_FDPTLYDVK_					0	0	0			REV__ENSG00000164303|ENST00000296741|ENPP6	REV__ENSG00000164303|ENST00000296741|ENPP6	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7994384765625	2	549.279315	1096.54408	1.477	0.00081131	1.1497	0.00063153	2.6268	0.0014428	549.280049205601	126.96	0.49372	126.96	126.65	127.14	0					25	10	3	0	0	0	0.027441	1	14692	14692		49.442	5.3247	1	338890	+		10651	20970	8755	8765	11500	11500					-0.00033382996502950846
FDQLLEALR	9	Unmodified	_FDQLLEALR_					0	0	0		ENSG00000107719|ENST00000263563|PALD1	ENSG00000107719|ENST00000263563|PALD1	ENSG00000107719|ENST00000263563|PALD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.7847900390625	2	552.806031	1103.59751	1.8156	0.0010037	3.5611	0.0019686	5.3767	0.0029723	552.808016579682	117.42	0.47243	117.42	117.23	117.7	0					14	9	2	0	0	0	0.027462	1	13461	13461		27.882	0	1	76065			10652	2609	8756	8766	11501	11501					0.04985414506040797
FDRIGNKKR	9	Unmodified	_FDRIGNKKR_					0	0	0			REV__tr|A0A7D6ZF05|A0A7D6ZF05_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15900PE=4SV=1	REV__tr|A0A7D6ZF05|A0A7D6ZF05_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15900PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3297729492188	2	567.330539	1132.64652	-0.48412	-0.00027465	-0.73588	-0.00041748	-1.22	-0.00069214	567.3299446868054	145.54	4.8872	144.11	142.68	147.57	-1.4357					247	95	4	0	0	0	0.63422	1	14592	14592		27.882	1.1893	1	208760	+		10653	31956	8757	8767	11502	11502					0.08550747585650242
FDRYAVCITR	10	Unmodified	_FDRYAVCITR_					0	0	0			REV__nc|ENSG00000157087|Q01814-4|ATP2B2	REV__nc|ENSG00000157087|Q01814-4|ATP2B2	MULTI-MSMS	OvCa9_classI_Rep4_	4	622.3165893554688	2	622.31624	1242.61793	-1.1174	-0.00069535	-2.2506	-0.0014006	-3.3679	-0.0020959	622.3148943210927	43.652	2.6676	40.644	40.273	42.941	-3.0074					119	51	4	0	0	0	0.28355	2	2114	2090;2114		70.816	5.3508	1	1727000	+		10654	20511	8758	8768	11503;11504	11504					0.006322618941794644
FDSAKYFTK	9	Unmodified	_FDSAKYFTK_					0	0	0			REV__nc|ENSG00000135899|Q9HB58|SP110	REV__nc|ENSG00000135899|Q9HB58|SP110	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.8268432617188	2	553.779482	1105.54441	1.1429	0.0006329	0.77896	0.00043137	1.9218	0.0010643	553.7799598710108	124.54	0.46304	124.54	124.33	124.79	0					12	9	2	0	0	0	0.027462	1	14367	14367		26.693	0	1	116340	+		10655	19331	8759	8769	11505	11505					-0.004139632766509749
FDSGSVRLQI	10	Unmodified	_FDSGSVRLQI_					0	0	0		nc|ENSG00000117595|O14896-2|IRF6;ENSG00000117595|ENST00000367021|IRF6	nc|ENSG00000117595|O14896-2|IRF6	nc|ENSG00000117595|O14896-2|IRF6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	560.8286743164062	2	561.301113	1120.58767	0.21579	0.00012112	1.9406	0.0010893	2.1564	0.0012104	561.3020716752784	118.07	0.89449	116.73	116.58	117.47	-1.3444					24	16	2	0	0	0	0.026942	1	11124	11124		47.96	9.1534	1	20211			10656	3264	8760	8770	11506	11506					0.032202265006844755
FDSKKKKR	8	Unmodified	_FDSKKKKR_					0	0	0		Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|63|2|sense	Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|63|2|sense	Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|63|2|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.3170166015625	2	518.816733	1035.61891	0.47493	0.0002464	4.2316	0.0021954	4.7065	0.0024418	518.8181648293289	140.92	0.67314	139.46	138.99	139.66	-1.4627					15	12	2	0	0	0	0.028476	1	13766	13766		29.15	0	1	15475			10657	14363	8761	8771	11507	11507					0.10252844325418664
FDTIKVKMQM	10	Unmodified	_FDTIKVKMQM_					0	0	0		SLC25A2|p.T39M|1|0.26|ENSG00000120329|chr5:141303750-141303750|G/A|missense_variant	SLC25A2|p.T39M|1|0.26|ENSG00000120329|chr5:141303750-141303750|G/A|missense_variant	SLC25A2|p.T39M|1|0.26|ENSG00000120329|chr5:141303750-141303750|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	413.55462646484375	3	414.219127	1239.63555	2.8765	0.0011915	-3.7298	-0.001545	-0.85332	-0.00035346	414.55226927262834	76.573	0.80692	76.573	76.115	76.922	0					36	19	3	0	0	0	0.027033	1	7699	7699		41.427	11.876	1	547560			10658	32824	8762	8772	11508	11508					0.0253184110483744
FDTIKVKMQM	10	Unmodified	_FDTIKVKMQM_					0	0	0		SLC25A2|p.T39M|1|0.26|ENSG00000120329|chr5:141303750-141303750|G/A|missense_variant	SLC25A2|p.T39M|1|0.26|ENSG00000120329|chr5:141303750-141303750|G/A|missense_variant	SLC25A2|p.T39M|1|0.26|ENSG00000120329|chr5:141303750-141303750|G/A|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		3	414.219127	1239.63555	0.55276	0.00022896	0.84369	0.00034947	1.3964	0.00057844	414.2203881828517	78.096	0.47182	76.334	75.912	76.384	-1.7619	-0.11948	0.0044469	NaN	68.846	9	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8025			10659	32824	8762	8772							0.0253184110483744
FDTLFERL	8	Unmodified	_FDTLFERL_					0	0	0			REV__nc|ENSG00000151834|P47869-2|GABRA2	REV__nc|ENSG00000151834|P47869-2|GABRA2	MULTI-MSMS	OvCa99_classI_Rep5	1	520.776123046875	2	520.7742	1039.53385	-1.1671	-0.00060781	0.64599	0.00033642	-0.52114	-0.0002714	520.774312920974	61.558	0.70515	61.558	61.289	61.994	0					32	16	4	0	0	0	0.56195	1	5438	5438		71.296	2.5089	1	1505500	+		10660	28927	8763	8773	11509	11509					0.01566054068939593
FDTLFERL	8	Unmodified	_FDTLFERL_					0	0	0			REV__nc|ENSG00000151834|P47869-2|GABRA2	REV__nc|ENSG00000151834|P47869-2|GABRA2	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	520.7742	1039.53385	-1.1671	-0.00060781	0.64599	0.00033642	-0.52114	-0.0002714	520.774312920974	61.558	0.70515	61.558	61.289	61.994	0	0	0	NaN	71.296	32	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1505500	+		10661	28927	8763	8773							0.01566054068939593
FDVAVKELSL	10	Unmodified	_FDVAVKELSL_					0	0	0			REV__sp|P16736|HELI_HCMVADNAreplicationhelicaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=HELIPE=3SV=1	REV__sp|P16736|HELI_HCMVADNAreplicationhelicaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=HELIPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	560.818115234375	2	560.816064	1119.61758	2.3001	0.0012899	-2.0127	-0.0011288	0.28732	0.00016114	560.8148675735948	129.64	1.1256	129.64	128.98	130.1	0					24	13	3	0	0	0	0.26424	1	15041	15041		85.161	0	1	573050	+		10662	29408	8764	8774	11510	11510					0.06255165445986677
FDVKKNHRL	9	Unmodified	_FDVKKNHRL_					0	0	0			REV__ENSG00000163945|ENST00000389851|UVSSA	REV__ENSG00000163945|ENST00000389851|UVSSA	MULTI-MSMS	OvCa99_classI_Rep5	1	578.8331909179688	2	578.832914	1155.65128	-0.2596	-0.00015026	0.024786	1.4347E-05	-0.23481	-0.00013592	578.8327449363436	32.179	0.59658	32.179	31.956	32.553	0					24	11	4	0	0	0	0.44294	1	1380	1380		47.916	0.25827	1	453750	+		10663	20917	8765	8775	11511	11511					0.07967631728411106
FDVKKNHRL	9	Unmodified	_FDVKKNHRL_					0	0	0			REV__ENSG00000163945|ENST00000389851|UVSSA	REV__ENSG00000163945|ENST00000389851|UVSSA	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	578.832914	1155.65128	0.30536	0.00017675	-0.6927	-0.00040096	-0.38734	-0.00022421	578.8324968231661	35.394	0.9988	32.545	32.24	33.238	-2.849	0.18277	-0.00035298	NaN	47.916	49	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57105	+		10664	20917	8765	8775							0.07967631728411106
FDVLPTFFYH	10	Unmodified	_FDVLPTFFYH_					0	0	0		ACACB|p.E1885Afs*17|1|0.03|ENSG00000076555|chr12:109247687-109247688|-/C|frameshift_variant;nc|ENSG00000076555|O00763-3|ACACB;nc|ENSG00000076555|O00763-2|ACACB;ENSG00000076555|ENST00000338432|ACACB	ACACB|p.E1885Afs*17|1|0.03|ENSG00000076555|chr12:109247687-109247688|-/C|frameshift_variant	ACACB|p.E1885Afs*17|1|0.03|ENSG00000076555|chr12:109247687-109247688|-/C|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	642.8472290039062	2	643.316232	1284.61791	0.02849	1.8328E-05	-0.31111	-0.00020014	-0.28262	-0.00018181	643.3164534805773	76.828	0.281	73.889	73.645	73.926	-2.9389					6	5	2	0	0	0	0.027056	1	6109	6109		35.618	15.622	1	17913			10665	14	8766	8776	11512	11512					-0.013014148341426335
FDVNKIIND	9	Unmodified	_FDVNKIIND_					0	0	0		tr|A0A7D6ZY17|A0A7D6ZY17_9CLOTDUF5105domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01435PE=4SV=1	tr|A0A7D6ZY17|A0A7D6ZY17_9CLOTDUF5105domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01435PE=4SV=1	tr|A0A7D6ZY17|A0A7D6ZY17_9CLOTDUF5105domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01435PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.30322265625	2	539.282389	1076.55022	2.0724	0.0011176	0.52479	0.00028301	2.5972	0.0014006	539.2819779866347	92.891	0.87756	92.891	92.385	93.263	0					44	20	4	0	0	0	0.027462	1	10046	10046		41.427	0	1	1467800			10666	35907	8767	8777	11513	11513					0.01501135235048423
FDVNSQPSI	9	Unmodified	_FDVNSQPSI_					0	0	0			REV__ENST00000448973.6_1_16:684599-685202:-|nuORF	REV__ENST00000448973.6_1_16:684599-685202:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	503.7464904785156	2	503.745639	1005.47673	-0.33036	-0.00016642	-1.3591	-0.00068464	-1.6895	-0.00085106	503.7455826140932	52.454	2.144	52.454	51.747	53.891	0					69	49	2	0	0	0	0.27001	1	4094	4094		66.429	0.53182	1	1339400	+		10667	18964	8768	8778	11514	11514					-0.025794132074224763
FDVQLWQY	8	Unmodified	_FDVQLWQY_					0	0	0			REV__CNTNAP2|p.S575Qfs*7|1|0.12|ENSG00000174469|chr7:147485985-147485986|-/C|frameshift_variant	REV__CNTNAP2|p.S575Qfs*7|1|0.12|ENSG00000174469|chr7:147485985-147485986|-/C|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.2840576171875	2	549.766374	1097.5182	1.3186	0.00072491	1.0487	0.00057652	2.3672	0.0013014	549.7668162358855	118.92	0.8984	118.92	118.63	119.52	0					45	19	3	0	0	0	0.028476	1	13656	13656		55.504	0	1	728660	+		10668	16158	8769	8779	11515	11515					-0.026662324480867028
FDWTEDETAFK	11	Unmodified	_FDWTEDETAFK_					0	0	0			REV__ENST00000578666.1_1_17:20805707-20805980:-|nuORF	REV__ENST00000578666.1_1_17:20805707-20805980:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.2373962402344	3	463.538347	1387.59321	-0.65782	-0.00030492	-0.037874	-1.7556E-05	-0.69569	-0.00032248	463.5384367806602	37.389	1.3242	37.389	36.977	38.301	0					36	28	2	0	0	0	0.026113	1	2165	2165		18.531	3.1979	1	47414	+		10669	27805	8770	8780	11516	11516					-0.08508139498212586
FDYKEQLPE	9	Unmodified	_FDYKEQLPE_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF;PSMD8|p.Q202Lfs*40|1|0.12|ENSG00000099341|chr19:38379307-38379308|-/TGGGCGACAGAGCA|frameshift_variant	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.8079833984375	2	584.779679	1167.5448	0.57433	0.00033586	2.2108	0.0012929	2.7852	0.0016287	584.781116488345	152.73	0.49612	152.73	152.55	153.05	0					16	12	2	0	0	0	0.027462	1	17877	17877		34.173	8.5985	1	69641			10670	1970	8771	8781	11517	11517					-0.0322658834743379
FDYLSKFHD	9	Unmodified	_FDYLSKFHD_					0	0	0			REV__ENST00000510779.1_1_5:148384276-148408226:-|nuORF	REV__ENST00000510779.1_1_5:148384276-148408226:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.3120727539062	2	586.274564	1170.53457	0.78512	0.0004603	-2.1832	-0.0012799	-1.3981	-0.00081965	586.7750624617157	157.32	1.2054	157.32	156.5	157.7	0					28	23	2	0	0	0	0.027462	1	18340	18340		55.504	14.932	1	24923	+		10671	21449	8772	8782	11518	11518					-0.043871512820032876
FDYMLKPYI	9	Unmodified	_FDYMLKPYI_					0	0	0			REV__tr|A0A7D6VQQ7|A0A7D6VQQ7_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23200PE=3SV=1	REV__tr|A0A7D6VQQ7|A0A7D6VQQ7_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23200PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	595.3023681640625	2	595.301736	1188.58892	0.61441	0.00036576	1.3214	0.00078663	1.9358	0.0011524	595.3024260115109	114.31	2.8947	114.31	113.66	116.55	0					190	62	5	0	0	0	0.36502	1	13100	13100		55.504	0.72789	1	10641000	+		10672	31347	8773	8783	11519	11519					0.00216724545202851
FEAILQYPLF	10	Unmodified	_FEAILQYPLF_					0	0	0			REV__nc|ENSG00000103429|Q9NZS9-2|BFAR	REV__nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-SECPEP	OvCa99_classI_Rep5	1	620.74755859375	2	620.834257	1239.65396	1.4277	0.00088637	-2.6891	-0.0016695	-1.2614	-0.00078314	620.8326426689109	135.06	0.5466	135.06	134.81	135.36	0					18	11	2	0	0	0	0.02663	1	15717	15717		51.193	0	1	216980	+		10673	15699	8774	8784	11520	11520					0.043720423426975685
FEAPDQKTL	9	Unmodified	_FEAPDQKTL_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	OvCa99_classI_Rep5	1	524.7696533203125	2	524.769114	1047.52368	-1.148	-0.00060244	0.74406	0.00039046	-0.40395	-0.00021198	524.7694389465685	69.775	0.93599	69.775	69.433	70.369	0					51	22	4	0	0	0	0.13326	1	6650	6650		88.177	13.922	1	3583700			10674	3261	8775	8785	11521	11521					0.001814463437312952
FEAPIKLVF	9	Unmodified	_FEAPIKLVF_					0	0	0		ENST00000483310.5_1_20:30136863-30150236:+|nuORF;ENST00000472128.5_1_20:30136905-30155443:+|nuORF;ENST00000492709.5_1_20:30132820-30157019:+|nuORF;nc|ENSG00000101294|Q8TCT9-5|HM13;nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13	ENST00000483310.5_1_20:30136863-30150236:+|nuORF	ENST00000483310.5_1_20:30136863-30150236:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	532.3131713867188	2	532.312961	1062.61137	-0.48537	-0.00025837	0.60246	0.00032069	0.11709	6.2328E-05	532.3131053813366	131.85	2.9469	131.62	131.2	134.15	-0.22696					143	59	4	0	0	0	0.064985	9	13007	12996;13001;13007;13013;13019;13025;13037;13049;13063		110.12	46.889	1	652480			10675	2161	8776	8786	11522;11523;11524;11525;11526;11527;11528;11529;11530	11524					0.08256692005124933
FEAPIKLVF	9	Unmodified	_FEAPIKLVF_					0	0	0		ENST00000483310.5_1_20:30136863-30150236:+|nuORF;ENST00000472128.5_1_20:30136905-30155443:+|nuORF;ENST00000492709.5_1_20:30132820-30157019:+|nuORF;nc|ENSG00000101294|Q8TCT9-5|HM13;nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13	ENST00000483310.5_1_20:30136863-30150236:+|nuORF	ENST00000483310.5_1_20:30136863-30150236:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	532.31201171875	2	532.312961	1062.61137	0.11904	6.3368E-05	-0.38933	-0.00020724	-0.27028	-0.00014387	532.3126380978339	132.86	2.4129	131.73	131.34	133.75	-1.1249					119	48	4	0	0	0	0.064985	11	10641	10625;10629;10635;10641;10647;10654;10661;10667;10673;10679;10685		110.12	37.709	1	555500			10676	2161	8776	8786	11531;11532;11533;11534;11535;11536;11537;11538;11539;11540;11541	11534					0.08256692005124933
FEAPIKLVF	9	Unmodified	_FEAPIKLVF_					0	0	0		ENST00000483310.5_1_20:30136863-30150236:+|nuORF;ENST00000472128.5_1_20:30136905-30155443:+|nuORF;ENST00000492709.5_1_20:30132820-30157019:+|nuORF;nc|ENSG00000101294|Q8TCT9-5|HM13;nc|ENSG00000101294|Q8TCT9|HM13;nc|ENSG00000101294|Q8TCT9-4|HM13;ENSG00000101294|ENST00000398174|HM13	ENST00000483310.5_1_20:30136863-30150236:+|nuORF	ENST00000483310.5_1_20:30136863-30150236:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.3124389648438	2	532.312961	1062.61137	2.5892	0.0013783	-3.184	-0.0016949	-0.59479	-0.00031661	532.3111515759076	133.11	3.0565	131.58	131.21	134.27	-1.5257					171	61	5	0	0	0	0.070405	10	12821	12812;12821;12833;12845;12858;12870;12883;12896;12909;12921		107.01	53.656	1	1015700			10677	2161	8776	8786	11542;11543;11544;11545;11546;11547;11548;11549;11550;11551	11543					0.08256692005124933
FEAQGKPEL	9	Unmodified	_FEAQGKPEL_					0	0	0		ENSG00000088356|ENST00000202017|PDRG1	ENSG00000088356|ENST00000202017|PDRG1	ENSG00000088356|ENST00000202017|PDRG1	MULTI-MSMS	OvCa99_classI_Rep5	1	509.7656555175781	2	509.763832	1017.51311	0.16845	8.5871E-05	-0.38811	-0.00019784	-0.21966	-0.00011197	509.7634695748116	64.769	0.92371	64.769	64.503	65.426	0					56	22	4	0	0	0	0.13011	2	5894	5894;5923		89.029	19.401	1	4484200			10678	1790	8777	8787	11552;11553	11552					0.0050546368928507945
FEARNPREL	9	Unmodified	_FEARNPREL_					0	0	0		nc|ENSG00000198758|Q8TE67-2|EPS8L3;ENSG00000198758|ENST00000361965|EPS8L3;nc|ENSG00000198758|Q8TE67-3|EPS8L3	nc|ENSG00000198758|Q8TE67-2|EPS8L3	nc|ENSG00000198758|Q8TE67-2|EPS8L3	MSMS	OvCa99_classI_Rep5	1	566.2952880859375	2	566.298904	1130.58326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	101.92	1	101.92	101.42	102.42	0								0	0	0	0.17131	1	11348	11348		47.657	0	1				10679	8868	8778	8788	11554	11554					0.023187620777662232
FEASAKLAKV	10	Unmodified	_FEASAKLAKV_					0	0	0			REV__nc|ENSG00000215695|Q92681|RSC1A1	REV__nc|ENSG00000215695|Q92681|RSC1A1	MULTI-MSMS	OvCa9_classI_Rep2	2	532.3135375976562	2	532.310949	1062.60735	-0.48537	-0.00025837	4.381	0.0023321	3.8957	0.0020737	532.3131053813366	131.85	2.9469	131.62	131.2	134.15	-0.22696					143	59	4	0	0	0	0.50999	1	13056	13056		52.937	1.6012	1	652480	+		10680	29134	8779	8789	11555	11555					0.07854602511406483
FEAVISALGGY	11	Unmodified	_FEAVISALGGY_					0	0	0			REV__nc|ENSG00000102078|O95258-2|SLC25A14;REV__ENST00000464184.5_1_X:129473893-129492795:+|nuORF	REV__nc|ENSG00000102078|O95258-2|SLC25A14	MULTI-MSMS	OvCa99_classI_Rep5	1	563.7920532226562	2	563.792589	1125.57063	1.107	0.00062411	-0.73505	-0.00041442	0.37193	0.00020969	563.7928677403697	140.54	0.61908	140.54	140.31	140.93	0					20	12	3	0	0	0	0.68684	1	16423	16423		34.173	2.6427	1	107040	+		10681	17536;26143	8780	8790	11556	11556					0.012863058948596517
FECDCNYCH	9	Unmodified	_FECDCNYCH_					0	0	0			REV__nc|ENSG00000108389|Q9NYA4|MTMR4	REV__nc|ENSG00000108389|Q9NYA4|MTMR4	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.2800903320312	2	567.177894	1132.34124	2.5336	0.001437	-1.4438	-0.00081887	1.0899	0.00061815	567.1771257989807	108.26	0.16837	108.26	108.11	108.28	0					6	3	2	0	0	0	0.027462	1	12226	12226		29.15	16.943	1	269210	+		10682	17885	8781	8791	11557	11557					-0.21964095656562677
FECVEMNF	8	Unmodified	_FECVEMNF_					0	0	0			REV__ENSG00000164483|ENST00000439090|SAMD3	REV__ENSG00000164483|ENST00000439090|SAMD3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.27325439453125	2	509.704071	1017.39359	0.28054	0.00014299	3.9171	0.0019966	4.1977	0.0021396	509.70551086549006	114.88	0.77036	113.49	113.2	113.97	-1.3977					23	14	2	0	0	0	0.028476	1	10692	10692		33.516	6.7195	1	16924	+		10683	20990	8782	8792	11558	11558					-0.11441189251286232
FECVEMNF	8	Unmodified	_FECVEMNF_					0	0	0			REV__ENSG00000164483|ENST00000439090|SAMD3	REV__ENSG00000164483|ENST00000439090|SAMD3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	509.704071	1017.39359	0.20451	0.00010424	4.2071	0.0021444	4.4117	0.0022486	509.70586977825917	113.82	0.49428	113.7	113.42	113.91	-0.11777	0.1916	-0.00011306	NaN	33.516	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8827.4	+		10684	20990	8782	8792							-0.11441189251286232
FECVEMNF	8	Unmodified	_FECVEMNF_					0	0	0			REV__ENSG00000164483|ENST00000439090|SAMD3	REV__ENSG00000164483|ENST00000439090|SAMD3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	509.704071	1017.39359	-0.088274	-4.4994E-05	5.1347	0.0026172	5.0464	0.0025722	509.7059772893063	114.4	0.39518	113.35	113.21	113.6	-1.055	-0.164	0.00083245	NaN	33.516	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7793.7	+		10685	20990	8782	8792							-0.11441189251286232
FEDAAEIRL	9	Unmodified	_FEDAAEIRL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;ENST00000494618.1_1_2:232322276-232325237:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	OvCa99_classI_Rep5	1	532.2756958007812	2	532.274564	1062.53457	2.449	0.0013035	-0.50739	-0.00027007	1.9416	0.0010335	532.2742520353212	95.948	1.1379	95.948	95.615	96.753	0					67	26	5	0	0	0	0.060996	2	10480	10480;10504		112.41	35.093	1	5217300			10686	3058	8783	8793	11559;11560	11559					0.0058084871798200766
FEDAAEIRL	9	Unmodified	_FEDAAEIRL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;ENST00000494618.1_1_2:232322276-232325237:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	532.274564	1062.53457	-0.64275	-0.00034212	-2.3565	-0.0012543	-2.9993	-0.0015964	532.2738135400867	98.145	0.50248	95.766	95.418	95.921	-2.3786	-0.091089	-0.0019278	NaN	112.41	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14983			10687	3058	8783	8793							0.0058084871798200766
FEDAMRHVCH	10	Unmodified	_FEDAMRHVCH_					0	0	0		nc|ENSG00000007174|Q9NYC9-2|DNAH9;DNAH9|p.H4399Qfs*22|1|0.04|ENSG00000007174|chr17:11962220-11962220|T/-|frameshift_variant;ENSG00000007174|ENST00000262442|DNAH9	nc|ENSG00000007174|Q9NYC9-2|DNAH9	nc|ENSG00000007174|Q9NYC9-2|DNAH9	MULTI-MSMS	OvCa99_classI_Rep5	1	622.7694702148438	2	622.7686	1243.52265	1.8693	0.0011642	-1.3053	-0.00081292	0.56399	0.00035124	622.7681258029886	85.727	1.7616	85.727	85.211	86.972	0					129	42	6	0	0	0	0.5635	1	9060	9060		34.173	0	1	35613000			10688	749	8784	8794	11561	11561					-0.08937414568481472
FEDGQKIVV	9	Unmodified	_FEDGQKIVV_					0	0	0		ENSG00000108946|ENST00000589228|PRKAR1A;nc|ENSG00000108946|P10644-2|PRKAR1A;ENST00000586541.5_2_17:66524793-66526587:+|nuORF	ENSG00000108946|ENST00000589228|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MSMS	OvCa99_classI_Rep5	1	517.775146484375	2	517.779482	1033.54441	1.942	0.0010055	-0.41275	-0.00021371	1.5293	0.00079182	517.7790948975884	76.201	1.2109	76.201	75.874	77.085	0					63	29	4	0	0	0	0.26076	1	7625	7625		67.494	12.717	1	9505200			10689	2687	8785	8795	11562	11562					0.028980367233771176
FEDGQKIVV	9	Unmodified	_FEDGQKIVV_					0	0	0		ENSG00000108946|ENST00000589228|PRKAR1A;nc|ENSG00000108946|P10644-2|PRKAR1A;ENST00000586541.5_2_17:66524793-66526587:+|nuORF	ENSG00000108946|ENST00000589228|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	517.779482	1033.54441	0.10565	5.4706E-05	0.61377	0.0003178	0.71942	0.0003725	517.7793650059334	78.361	0.60475	76.008	75.749	76.354	-2.3527	-0.20542	0.00057339	NaN	67.494	35	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146630			10690	2687	8785	8795							0.028980367233771176
FEDGQKIVV	9	Unmodified	_FEDGQKIVV_					0	0	0		ENSG00000108946|ENST00000589228|PRKAR1A;nc|ENSG00000108946|P10644-2|PRKAR1A;ENST00000586541.5_2_17:66524793-66526587:+|nuORF	ENSG00000108946|ENST00000589228|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	517.779482	1033.54441	-0.4759	-0.00024641	1.2546	0.00064961	0.77872	0.0004032	517.7796062123044	79.182	1.2912	76.431	76.085	77.376	-2.7514	0.2177	0.001237	NaN	67.494	47	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211970			10691	2687	8785	8795							0.028980367233771176
FEDHNPPQL	9	Unmodified	_FEDHNPPQL_					0	0	0		nc|ENSG00000171862|P60484-3|PTEN;PTEN|p.R233Dfs*23|1|0.94|ENSG00000171862|chr10:87957915-87957915|C/-|frameshift_variant;ENSG00000171862|ENST00000371953|PTEN;ENST00000532280.1_1_9:33675440-33676694:-|nuORF;nc|ENSG00000171862|P60484-2|PTEN	nc|ENSG00000171862|P60484-3|PTEN	nc|ENSG00000171862|P60484-3|PTEN	MULTI-MSMS	OvCa99_classI_Rep5	1	548.7603759765625	2	548.756538	1095.49852	-0.40629	-0.00022295	0.47562	0.000261	0.069332	3.8047E-05	548.7566999398522	70.47	1.2175	70.47	70.21	71.427	0					71	30	4	0	0	0	0.03923	1	6751	6751		127.46	28.087	1	5953000			10692	7242	8786	8796	11563	11563					-0.04540608458864881
FEDIACWDLD	10	Unmodified	_FEDIACWDLD_					0	0	0		ENSG00000106128|ENST00000326139|GHRHR	ENSG00000106128|ENST00000326139|GHRHR	ENSG00000106128|ENST00000326139|GHRHR	MULTI-SECPEP	OvCa99_classI_Rep5	1	613.2976684570312	2	613.755346	1225.49614	2.4247	0.0014882	-2.0018	-0.0012286	0.42294	0.00025958	613.753557521643	91.539	0.45729	91.539	91.296	91.753	0					16	10	2	0	0	0	0.026915	1	9890	9890		35.618	6.4482	1	483900			10693	2532	8787	8797	11564	11564					-0.1075882497884777
FEDIKQNLK	9	Unmodified	_FEDIKQNLK_					0	0	0			REV__nc|ENSG00000138190|Q8TAG9-2|EXOC6	REV__nc|ENSG00000138190|Q8TAG9-2|EXOC6	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.8134765625	2	567.811313	1133.60807	0.21186	0.00012029	-0.45184	-0.00025656	-0.23998	-0.00013627	567.8110215969044	91.183	1.4761	88.64	88.346	89.822	-2.5425					76	28	4	0	0	0	0.19758	1	7899	7899		76.774	4.8967	1	477570	+		10694	19520	8788	8798	11565	11565					0.04661397160452907
FEDIYMDQRKT	11	Unmodified	_FEDIYMDQRKT_					0	0	0		ENST00000424326.5_1_2:167262092-167297919:-|nuORF;ENSG00000136546|ENST00000643258|SCN7A	ENST00000424326.5_1_2:167262092-167297919:-|nuORF	ENST00000424326.5_1_2:167262092-167297919:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.75958251953125	3	482.562498	1444.66566	1.5789	0.00076191	-0.1736	-8.3772E-05	1.4053	0.00067814	482.89655783539445	93.694	0.57681	93.694	93.346	93.923	0					18	13	2	0	0	0	0.026033	1	10148	10148		17.167	0	1	573930			10695	4498	8789	8799	11566	11566					-0.038881286963032835
FEDLQNYIL	9	Unmodified	_FEDLQNYIL_					0	0	0		ENSG00000125827|ENST00000246024|TMX4	ENSG00000125827|ENST00000246024|TMX4	ENSG00000125827|ENST00000246024|TMX4	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.318603515625	2	577.790047	1153.56554	1.9871	0.0011481	-2.8149	-0.0016264	-0.82787	-0.00047833	577.7880883850029	80.54	1.0582	80.54	80.314	81.372	0					58	24	4	0	0	0	0.027462	1	8369	8369		26.693	4.1133	1	2373600			10696	3740	8790	8800	11567	11567					-0.0050999796776523
FEDLRKQFV	9	Unmodified	_FEDLRKQFV_					0	0	0			REV__ENST00000483659.5_1_2:85622736-85628768:-|nuORF	REV__ENST00000483659.5_1_2:85622736-85628768:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	591.3211669921875	2	591.319306	1180.62406	2.8592	0.0016907	-0.46006	-0.00027204	2.3992	0.0014187	591.3188034613099	87.932	0.92087	87.932	87.505	88.426	0					62	21	5	0	0	0	0.14855	1	9330	9330		85.161	5.4482	1	2709000	+		10697	26530	8791	8801	11568	11568					0.04097103397361934
FEDRERQEL	9	Unmodified	_FEDRERQEL_					0	0	0		YY1AP1-ARHGEF2|2|fusion;YY1AP1-ARHGEF2|3|fusion;YY1AP1-ARHGEF2|1|fusion;YY1AP1-ARHGEF2|14|fusion;YY1AP1-ARHGEF2|13|fusion;YY1AP1-ARHGEF2|8|fusion;YY1AP1-ARHGEF2|7|fusion;YY1AP1-ARHGEF2|16|fusion;YY1AP1-ARHGEF2|15|fusion;YY1AP1-ARHGEF2|4|fusion;YY1AP1-ARHGEF2|6|fusion;YY1AP1-ARHGEF2|5|fusion;YY1AP1-ARHGEF2|12|fusion;YY1AP1-ARHGEF2|11|fusion;YY1AP1-ARHGEF2|10|fusion;YY1AP1-ARHGEF2|9|fusion;ENSG00000116584|ENST00000361247|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;nc|ENSG00000116584|Q92974-3|ARHGEF2	YY1AP1-ARHGEF2|2|fusion	YY1AP1-ARHGEF2|2|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	611.2975463867188	2	611.296559	1220.57856	0.18325	0.00011202	-0.16974	-0.00010376	0.013514	8.2612E-06	611.2963466598242	46.77	0.92032	46.77	46.501	47.422	0					58	20	5	0	0	0	0.3249	1	3324	3324		60.118	5.3419	1	1990500			10698	36311	8792	8802	11569	11569					-0.022901668556642107
FEEAKQDC	8	Unmodified	_FEEAKQDC_					0	0	0		ENSG00000104450|ENST00000388798|SPAG1	ENSG00000104450|ENST00000388798|SPAG1	ENSG00000104450|ENST00000388798|SPAG1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.7740783691406	2	485.20275	968.390947	-1.0241	-0.00049692	0.31397	0.00015234	-0.71018	-0.00034458	485.20175745939383	42.887	0.52425	39.879	39.643	40.168	-3.0074					15	9	2	0	0	0	0.028476	1	2045	2045		45.952	0	1	16597			10699	2379	8793	8803	11570	11570					-0.09451321384597122
FEEKQGTEI	9	Unmodified	_FEEKQGTEI_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;ENST00000494618.1_1_2:232322276-232325237:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	OvCa99_classI_Rep5	1	540.764892578125	2	540.764029	1079.5135	-0.45982	-0.00024866	0.60378	0.0003265	0.14396	7.7849E-05	540.7642237493314	54.74	1.0941	54.74	54.505	55.599	0					62	25	4	0	0	0	0.070405	1	4440	4440		107.01	11.192	1	2630300			10700	3058	8794	8804	11571	11571					-0.023071613815318415
FEEKSIIKM	9	Unmodified	_FEEKSIIKM_					0	0	0		nc|ENSG00000116171|P22307-3|SCP2;nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;nc|ENSG00000116171|P22307-4|SCP2	nc|ENSG00000116171|P22307-3|SCP2	nc|ENSG00000116171|P22307-3|SCP2	MULTI-MSMS	OvCa99_classI_Rep5	1	562.8058471679688	2	562.804642	1123.59473	0.91162	0.00051307	-0.37163	-0.00020915	0.54	0.00030391	562.8042826399964	74.001	0.96904	74.001	73.792	74.761	0					38	24	3	0	0	0	0.084152	1	7286	7286		101.46	24.686	1	4259700			10701	3160	8795	8805	11572	11572					0.03787823056882189
FEELERKY	8	Unmodified	_FEELERKY_					0	0	0		KDM4A|p.S510Ifs*2|1|0.07|ENSG00000066135|chr1:43671668-43671669|-/A|frameshift_variant;KDM4A|p.S510Qfs*4|1|0.07|ENSG00000066135|chr1:43671665-43671666|-/AGCCAGG|frameshift_variant;KDM4A|p.S510Hfs*85|1|0.05|ENSG00000066135|chr1:43671666-43671667|-/CCCATTCCCCGCCCATGTTC|frameshift_variant;KDM4A|p.R605Pfs*13|1|0.12|ENSG00000066135|chr1:43683757-43683758|-/C|frameshift_variant;ENSG00000066135|ENST00000372396|KDM4A	KDM4A|p.S510Ifs*2|1|0.07|ENSG00000066135|chr1:43671668-43671669|-/A|frameshift_variant	KDM4A|p.S510Ifs*2|1|0.07|ENSG00000066135|chr1:43671668-43671669|-/A|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	557.2835083007812	2	557.282389	1112.55022	2.6136	0.0014565	1.9653	0.0010952	4.5789	0.0025517	557.2825174405899	86.083	0.60104	86.083	85.83	86.431	0					33	14	4	0	0	0	0.57734	1	9061	9061		68.787	4.5796	1	1434800			10702	1345	8796	8806	11573	11573					-0.001548647649542545
FEELQSPTFTE	11	Unmodified	_FEELQSPTFTE_					0	0	0			REV__ENST00000557682.6_1_15:93435286-93441027:+|nuORF	REV__ENST00000557682.6_1_15:93435286-93441027:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.236572265625	3	443.206597	1326.59796	-0.81913	-0.00036305	0.78602	0.00034837	-0.03311	-1.4674E-05	443.2070473963423	53.131	1.0033	49.923	49.553	50.556	-3.208					48	19	4	0	0	0	0.025628	1	3278	3278		61.765	8.1677	1	67494	+		10703	27575	8797	8807	11574	11574					-0.05227255355430316
FEELQSPTFTE	11	Unmodified	_FEELQSPTFTE_					0	0	0			REV__ENST00000557682.6_1_15:93435286-93441027:+|nuORF	REV__ENST00000557682.6_1_15:93435286-93441027:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		3	443.206597	1326.59796	0.3093	0.00013708	-2.2309	-0.00098877	-1.9216	-0.00085169	443.20498411411893	50.487	0.79058	50.487	50.073	50.863	0	0.30366	-0.0033315	NaN	61.765	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71915	+		10704	27575	8797	8807							-0.05227255355430316
FEELQSPTFTE	11	Unmodified	_FEELQSPTFTE_					0	0	0			REV__ENST00000557682.6_1_15:93435286-93441027:+|nuORF	REV__ENST00000557682.6_1_15:93435286-93441027:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	443.206597	1326.59796	0.44102	0.00019546	-0.2339	-0.00010367	0.20712	9.1797E-05	443.20648187400894	52.954	0.44266	50.141	49.788	50.231	-2.8139	-0.042971	-0.00067619	NaN	61.765	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16267	+		10705	27575	8797	8807							-0.05227255355430316
FEENVLPPKK	10	Unmodified	_FEENVLPPKK_					0	0	0		ENSG00000122694|ENST00000377960|GLIPR2	ENSG00000122694|ENST00000377960|GLIPR2	ENSG00000122694|ENST00000377960|GLIPR2	MULTI-MSMS	OvCa99_classI_Rep5	1	400.89349365234375	3	400.892284	1199.65502	1.0886	0.00043639	-0.75388	-0.00030223	0.33467	0.00013417	400.8917985503353	60.015	2.9335	60.015	58.892	61.826	0					192	72	4	0	0	0	0.58667	1	5329	5329		43.651	4.398	1	1511300			10706	3550	8798	8808	11575	11575					0.06318256711597314
FEERSKFFYDT	11	Unmodified	_FEERSKFFYDT_					0	0	0			REV__tr|A0A553SP56|A0A553SP56_NIACIGuanylatekinaseOS=NialliacirculansOX=1397GN=gmkPE=3SV=1	REV__tr|A0A553SP56|A0A553SP56_NIACIGuanylatekinaseOS=NialliacirculansOX=1397GN=gmkPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.26953125	3	490.229625	1467.66705	0.42245	0.0002071	-2.0908	-0.001025	-1.6684	-0.00081789	490.2283248102557	59.618	0.39375	56.226	55.953	56.347	-3.392					10	7	2	0	0	0	0.02625	1	3993	3993		18.531	8.4272	1	15374	+		10707	30496	8799	8809	11576	11576					-0.04808171335844236
FEERSKFFYDT	11	Unmodified	_FEERSKFFYDT_					0	0	0			REV__tr|A0A553SP56|A0A553SP56_NIACIGuanylatekinaseOS=NialliacirculansOX=1397GN=gmkPE=3SV=1	REV__tr|A0A553SP56|A0A553SP56_NIACIGuanylatekinaseOS=NialliacirculansOX=1397GN=gmkPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	490.229625	1467.66705	0.062779	3.0776E-05	-2.8932	-0.0014183	-2.8304	-0.0013875	490.2282943665377	58.81	0.50819	56.029	55.838	56.347	-2.7801	-0.09833	-0.00031796	NaN	13.508	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13107	+		10708	30496	8799	8809							-0.04808171335844236
FEEVLISHK	9	Unmodified	_FEEVLISHK_					0	0	0			REV__ENST00000278559.7_1_11:76834919-76835126:+|nuORF	REV__ENST00000278559.7_1_11:76834919-76835126:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.279052734375	2	551.300581	1100.58661	0.82688	0.00045586	-0.34666	-0.00019112	0.48021	0.00026474	551.2999577827972	114	0.29585	113.89	113.66	113.96	-0.11777					7	5	2	0	0	0	0.027462	1	10807	10807		34.173	18.531	1	5510.4	+		10709	24109	8800	8810	11577	11577					0.04034012131751297
FEFGFGAEI	9	Unmodified	_FEFGFGAEI_					0	0	0		tr|A0A7D6W035|A0A7D6W035_9CLOTGamma-glutamylphosphatereductaseOS=ClostridiumintestinaleOX=36845GN=proAPE=3SV=1	tr|A0A7D6W035|A0A7D6W035_9CLOTGamma-glutamylphosphatereductaseOS=ClostridiumintestinaleOX=36845GN=proAPE=3SV=1	tr|A0A7D6W035|A0A7D6W035_9CLOTGamma-glutamylphosphatereductaseOS=ClostridiumintestinaleOX=36845GN=proAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.27008056640625	2	508.739825	1015.4651	0.43861	0.00022314	-1.0425	-0.00053037	-0.60391	-0.00030724	508.73922807277535	72.617	0.3854	72.617	72.492	72.877	0					17	9	3	0	0	0	0.027462	1	7094	7094		35.618	0	1	328070			10710	35371	8801	8811	11578	11578					-0.04201610230757069
FEFGSLDQKL	10	Unmodified	_FEFGSLDQKL_					0	0	0		nc|ENSG00000055917|Q8TB72-2|PUM2;nc|ENSG00000055917|Q8TB72-4|PUM2;ENSG00000055917|ENST00000361078|PUM2;nc|ENSG00000055917|Q8TB72|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	nc|ENSG00000055917|Q8TB72-2|PUM2	MULTI-MSMS	OvCa99_classI_Rep5	1	592.3079223632812	2	592.303321	1182.59209	1.4913	0.00088331	0.37416	0.00022161	1.8655	0.0011049	592.3034166935284	111.8	1.0978	111.8	111.51	112.61	0					55	23	3	0	0	0	0.32141	1	12750	12750		78.264	4.0087	1	1610000			10711	1223	8802	8812	11579	11579					0.008096909235746352
FEFGSLEQKL	10	Unmodified	_FEFGSLEQKL_					0	0	0		nc|ENSG00000134644|Q14671-2|PUM1;ENSG00000134644|ENST00000426105|PUM1;nc|ENSG00000134644|Q14671-4|PUM1;PUM1-NKAIN1|5|fusion;PUM1-NKAIN1|4|fusion;nc|ENSG00000134644|Q14671|PUM1	nc|ENSG00000134644|Q14671-2|PUM1	nc|ENSG00000134644|Q14671-2|PUM1	MULTI-MSMS	OvCa99_classI_Rep5	1	599.3131103515625	2	599.311146	1196.60774	1.5919	0.00095407	0.29532	0.00017699	1.8873	0.0011311	599.311278981685	113.9	0.54164	113.9	113.66	114.2	0					26	11	3	0	0	0	0.0020852	1	12990	12990		169.65	47.476	1	1268500			10712	4315	8803	8813	11580	11580					0.017299774406183133
FEFPIPYPT	9	Unmodified	_FEFPIPYPT_					0	0	0			REV__ENST00000375151.4_1_X:54471406-54471697:+|nuORF	REV__ENST00000375151.4_1_X:54471406-54471697:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.8087768554688	2	555.778951	1109.54335	2.2318	0.0012404	-2.8829	-0.0016023	-0.65108	-0.00036185	555.7770070949485	118.13	0.41985	118.13	117.97	118.39	0					15	8	3	0	0	0	0.027462	1	13534	13534		29.15	1.2673	1	195730	+		10713	25083	8804	8814	11581	11581					-0.007041776455253057
FEFPNKVVL	9	Unmodified	_FEFPNKVVL_					0	0	0		ENSG00000115084|ENST00000245680|SLC35F5;ENST00000470204.2_1_2:114476824-114486999:-|nuORF	ENSG00000115084|ENST00000245680|SLC35F5	ENSG00000115084|ENST00000245680|SLC35F5	MULTI-MSMS	OvCa9_classI_Rep2	2	546.807373046875	2	546.808042	1091.60153	-0.99544	-0.00054432	0.69287	0.00037887	-0.30258	-0.00016545	546.8082578719798	116.77	2.0318	116.64	116.42	118.45	-0.12868					100	40	4	0	0	0	0.19758	5	11165	11165;11170;11177;11190;11209		76.774	17.992	1	305590			10714	3059	8805	8815	11582;11583;11584;11585;11586	11582					0.059395039997752974
FEFPNKVVL	9	Unmodified	_FEFPNKVVL_					0	0	0		ENSG00000115084|ENST00000245680|SLC35F5;ENST00000470204.2_1_2:114476824-114486999:-|nuORF	ENSG00000115084|ENST00000245680|SLC35F5	ENSG00000115084|ENST00000245680|SLC35F5	MULTI-MSMS	OvCa9_classI_Rep3	3	546.8087768554688	2	546.808042	1091.60153	-1.078	-0.00058948	0.93072	0.00050893	-0.14732	-8.0553E-05	546.8083366729987	117.61	1.8837	116.58	116.29	118.17	-1.0324					95	37	4	0	0	0	0.16562	7	8833	8833;8837;8850;8856;8863;8870;8875		82.241	29.402	1	396580			10715	3059	8805	8815	11587;11588;11589;11590;11591;11592;11593	11587					0.059395039997752974
FEFPNKVVL	9	Unmodified	_FEFPNKVVL_					0	0	0		ENSG00000115084|ENST00000245680|SLC35F5;ENST00000470204.2_1_2:114476824-114486999:-|nuORF	ENSG00000115084|ENST00000245680|SLC35F5	ENSG00000115084|ENST00000245680|SLC35F5	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.807373046875	2	546.808042	1091.60153	-1.1771	-0.00064363	0.89437	0.00048905	-0.28271	-0.00015459	546.8084190590075	117.84	2.0896	116.49	116.16	118.25	-1.3444					94	39	3	0	0	0	0.11471	3	11020	11020;11032;11044		93.195	26.766	1	470000			10716	3059	8805	8815	11594;11595;11596	11594					0.059395039997752974
FEGIIKGKYK	10	Unmodified	_FEGIIKGKYK_					0	0	0		MTHFD1-CASK|1|fusion;MTHFD1-CASK|3|fusion;MTHFD1-CASK|2|fusion;ENSG00000147044|ENST00000378163|CASK;nc|ENSG00000147044|O14936-2|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-3|CASK;CASK|p.A814Kfs*50|1|0.31|ENSG00000147044|chrX:41531075-41531088|TCCCATACATCGCA/-|frameshift_variant;ENST00000486402.1_1_X:41519640-41524682:-|nuORF	MTHFD1-CASK|1|fusion	MTHFD1-CASK|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	592.2922973632812	2	591.847699	1181.68084	1.4029	0.00083033	1.8893	0.0011182	3.2923	0.0019485	592.3505547107972	83.547	0.42381	83.547	83.377	83.801	0					11	9	2	0	0	0	0.027028	1	8724	8724		31.53	17.393	1	147330			10717	14842	8806	8816	11597	11597					0.09727150953881392
FEGKNLLKI	9	Unmodified	_FEGKNLLKI_					0	0	0		tr|A0A553SGB3|A0A553SGB3_NIACITranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_10495PE=4SV=1	tr|A0A553SGB3|A0A553SGB3_NIACITranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_10495PE=4SV=1	tr|A0A553SGB3|A0A553SGB3_NIACITranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_10495PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	531.322998046875	2	531.321317	1060.62808	1.2118	0.00064388	0.70521	0.0003747	1.9171	0.0010186	531.3215612494805	109.48	1.1154	109.48	109.19	110.31	0					45	24	3	0	0	0	0.33652	1	12421	12421		58.782	0	1	1654200			10718	33139	8807	8817	11598	11598					0.1001919289108173
FEGLARKMKM	10	Oxidation (M)	_FEGLARKMKM(Oxidation (M))_		FEGLARKM(0.11)KM(0.89)		FEGLARKM(-9.1)KM(9.1)	0	0	1			REV__tr|A0A7D6ZJ05|A0A7D6ZJ05_9CLOTBiotincarboxylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09300PE=4SV=1	REV__tr|A0A7D6ZJ05|A0A7D6ZJ05_9CLOTBiotincarboxylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09300PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	613.8229370117188	2	613.822844	1225.63113	1.9793	0.001215	-2.5225	-0.0015484	-0.5432	-0.00033343	613.8211310976798	83.462	8.351	83.462	82.264	90.615	0					423	201	4	0	0	0	0.48198	1	8825	8825		56.721	18.91	2	13312000	+		10719	32075	8808	8818	11599	11599		712			0.02734376681928552
FEGPDAKL	8	Unmodified	_FEGPDAKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa99_classI_Rep5	1	438.7295227050781	2	438.726718	875.438883	1.0574	0.00046392	1.6946	0.00074349	2.7521	0.0012074	438.7268625760674	70.653	0.50844	70.653	70.369	70.877	0					25	12	3	0	0	0	0.40148	1	6780	6780		87.754	26.782	1	4838800			10720	3687	8809	8819	11600	11600					-0.003818794022322436
FEGSSDLDVGG	11	Unmodified	_FEGSSDLDVGG_					0	0	0			REV__nc|ENSG00000124782|Q92766-5|RREB1	REV__nc|ENSG00000124782|Q92766-5|RREB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.78125	2	541.735468	1081.45638	1.4955	0.00081016	-3.7555	-0.0020345	-2.26	-0.0012243	541.7336246504315	101.3	0.24837	101.3	101.19	101.44	0					7	5	2	0	0	0	0.025496	1	11266	11266		32.812	0	1	131170	+		10721	18705	8810	8820	11601	11601					-0.08108628657896588
FEGVARVHGSP	11	Unmodified	_FEGVARVHGSP_					0	0	0		nc|ENSG00000064042|Q9UPQ0-9|LIMCH1;nc|ENSG00000064042|Q9UPQ0-8|LIMCH1;nc|ENSG00000064042|Q9UPQ0-6|LIMCH1;nc|ENSG00000064042|Q9UPQ0-5|LIMCH1;nc|ENSG00000064042|Q9UPQ0-10|LIMCH1;nc|ENSG00000064042|Q9UPQ0-2|LIMCH1;nc|ENSG00000064042|Q9UPQ0-4|LIMCH1;nc|ENSG00000064042|Q9UPQ0|LIMCH1;nc|ENSG00000064042|Q9UPQ0-3|LIMCH1;ENSG00000064042|ENST00000503057|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MULTI-MSMS	OvCa99_classI_Rep5	1	578.2996826171875	2	578.298904	1154.58326	1.7348	0.0010032	-0.12714	-7.3525E-05	1.6076	0.00092968	578.2988099179355	77.428	1.1308	77.428	76.922	78.053	0					51	26	2	0	0	0	0.48812	1	7802	7802		54.722	1.3709	1	1548600			10722	1292	8811	8821	11602	11602					0.01214762077756859
FEGVARVHGSP	11	Unmodified	_FEGVARVHGSP_					0	0	0		nc|ENSG00000064042|Q9UPQ0-9|LIMCH1;nc|ENSG00000064042|Q9UPQ0-8|LIMCH1;nc|ENSG00000064042|Q9UPQ0-6|LIMCH1;nc|ENSG00000064042|Q9UPQ0-5|LIMCH1;nc|ENSG00000064042|Q9UPQ0-10|LIMCH1;nc|ENSG00000064042|Q9UPQ0-2|LIMCH1;nc|ENSG00000064042|Q9UPQ0-4|LIMCH1;nc|ENSG00000064042|Q9UPQ0|LIMCH1;nc|ENSG00000064042|Q9UPQ0-3|LIMCH1;ENSG00000064042|ENST00000503057|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	578.298904	1154.58326	-0.25915	-0.00014987	-0.82724	-0.00047839	-1.0864	-0.00062826	578.2982654569487	79.469	1.7228	77.73	76.951	78.674	-1.7398	0.063003	-0.00068753	NaN	54.722	51	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108610			10723	1292	8811	8821							0.01214762077756859
FEGVARVHGSP	11	Unmodified	_FEGVARVHGSP_					0	0	0		nc|ENSG00000064042|Q9UPQ0-9|LIMCH1;nc|ENSG00000064042|Q9UPQ0-8|LIMCH1;nc|ENSG00000064042|Q9UPQ0-6|LIMCH1;nc|ENSG00000064042|Q9UPQ0-5|LIMCH1;nc|ENSG00000064042|Q9UPQ0-10|LIMCH1;nc|ENSG00000064042|Q9UPQ0-2|LIMCH1;nc|ENSG00000064042|Q9UPQ0-4|LIMCH1;nc|ENSG00000064042|Q9UPQ0|LIMCH1;nc|ENSG00000064042|Q9UPQ0-3|LIMCH1;ENSG00000064042|ENST00000503057|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	578.298904	1154.58326	-0.77774	-0.00044977	0.25842	0.00014944	-0.51933	-0.00030033	578.2990014948037	80.226	1.5273	77.886	77.463	78.99	-2.3399	0.21962	0.00056814	NaN	54.722	48	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102880			10724	1292	8811	8821							0.01214762077756859
FEGVARVHGSP	11	Unmodified	_FEGVARVHGSP_					0	0	0		nc|ENSG00000064042|Q9UPQ0-9|LIMCH1;nc|ENSG00000064042|Q9UPQ0-8|LIMCH1;nc|ENSG00000064042|Q9UPQ0-6|LIMCH1;nc|ENSG00000064042|Q9UPQ0-5|LIMCH1;nc|ENSG00000064042|Q9UPQ0-10|LIMCH1;nc|ENSG00000064042|Q9UPQ0-2|LIMCH1;nc|ENSG00000064042|Q9UPQ0-4|LIMCH1;nc|ENSG00000064042|Q9UPQ0|LIMCH1;nc|ENSG00000064042|Q9UPQ0-3|LIMCH1;ENSG00000064042|ENST00000503057|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	578.298904	1154.58326	-1.2474	-0.00072138	-0.039999	-2.3131E-05	-1.2874	-0.00074451	578.2987757581536	80.333	1.2229	77.623	77.075	78.298	-2.7106	-0.043938	0.000223	NaN	54.722	45	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120720			10725	1292	8811	8821							0.01214762077756859
FEGYEKSDDE	10	Unmodified	_FEGYEKSDDE_					0	0	0			REV__nc|ENSG00000183199|Q58FF7|HSP90AB3P	REV__nc|ENSG00000183199|Q58FF7|HSP90AB3P	MULTI-MSMS	OvCa99_classI_Rep5	1	609.7410888671875	2	609.74349	1217.47243	0.71365	0.00043514	-3.2364	-0.0019734	-2.5227	-0.0015382	609.7412875703883	45.518	0.64574	45.518	45.289	45.934	0					25	14	3	0	0	0	0.42962	1	3157	3157		64.207	11.271	1	922880	+		10726	29047	8812	8822	11603	11603					-0.12760967211647767
FEGYEKSDDE	10	Unmodified	_FEGYEKSDDE_					0	0	0			REV__nc|ENSG00000183199|Q58FF7|HSP90AB3P	REV__nc|ENSG00000183199|Q58FF7|HSP90AB3P	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	609.74349	1217.47243	0.71365	0.00043514	-3.2364	-0.0019734	-2.5227	-0.0015382	609.7412875703883	45.518	0.64574	45.518	45.289	45.934	0	0	0	NaN	64.207	25	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	922880	+		10727	29047	8812	8822							-0.12760967211647767
FEHHGQVRL	9	Unmodified	_FEHHGQVRL_					0	0	0		ENST00000521942.5_1_5:70344502-70358599:-|nuORF;ENST00000523003.5_1_5:70351153-70358599:-|nuORF;ENST00000522654.5_1_5:70344846-70358599:-|nuORF;ENST00000502619.5_1_5:68860950-68874677:+|nuORF;ENSG00000183474|ENST00000380729|GTF2H2C;ENSG00000145736|ENST00000274400|GTF2H2;ENST00000508065.7_1_5:69716099-69743177:+|nuORF;ENST00000508325.5_1_5:68860950-68862940:+|nuORF	ENST00000521942.5_1_5:70344502-70358599:-|nuORF	ENST00000521942.5_1_5:70344502-70358599:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	561.794189453125	2	561.793789	1121.57303	0.094033	5.2827E-05	-0.5475	-0.00030758	-0.45347	-0.00025476	561.7934366794723	40.406	0.82128	40.406	40.06	40.881	0					44	17	4	0	0	0	0.27001	1	2450	2450		66.429	16.893	1	1025600			10728	13133	8813	8823	11604	11604					0.017101991431900387
FEHPLFKML	9	Unmodified	_FEHPLFKML_					0	0	0		ENST00000540163.5_1_11:114280606-114280909:+|nuORF	ENST00000540163.5_1_11:114280606-114280909:+|nuORF	ENST00000540163.5_1_11:114280606-114280909:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	580.7529296875	2	581.309895	1160.60524	-0.95505	-0.00055518	2.6975	0.0015681	1.7424	0.0010129	581.311443120975	94.604	0.85063	92.135	91.86	92.711	-2.4685					22	16	2	0	0	0	0.027462	1	8352	8352		35.618	0	1	53621			10729	13447	8814	8824	11605	11605					0.03135850501962523
FEHPLFKML	9	Unmodified	_FEHPLFKML_					0	0	0		ENST00000540163.5_1_11:114280606-114280909:+|nuORF	ENST00000540163.5_1_11:114280606-114280909:+|nuORF	ENST00000540163.5_1_11:114280606-114280909:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	581.309895	1160.60524	-0.29275	-0.00017018	3.7482	0.0021788	3.4554	0.0020087	581.3118413883337	93.197	1.0834	92.029	91.806	92.889	-1.168	-0.025661	-7.8651E-05	NaN	35.618	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58208			10730	13447	8814	8824							0.03135850501962523
FEHPLFKML	9	Unmodified	_FEHPLFKML_					0	0	0		ENST00000540163.5_1_11:114280606-114280909:+|nuORF	ENST00000540163.5_1_11:114280606-114280909:+|nuORF	ENST00000540163.5_1_11:114280606-114280909:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	581.309895	1160.60524	-1.994	-0.0011591	4.1073	0.0023876	2.1133	0.0012285	581.3123000283903	93.961	0.96661	91.999	91.729	92.696	-1.9617	-0.055186	0.00033889	NaN	35.618	28	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57033			10731	13447	8814	8824							0.03135850501962523
FEHRYSVDL	9	Unmodified	_FEHRYSVDL_					0	0	0		ST3GAL5|p.P371Lfs*16|1|0.14|ENSG00000115525|chr2:85840279-85840289|GTAGTGCAAAG/-|frameshift_variant;nc|ENSG00000115525|Q9UNP4-2|ST3GAL5;nc|ENSG00000115525|Q9UNP4-3|ST3GAL5;ENSG00000115525|ENST00000638572|ST3GAL5	ST3GAL5|p.P371Lfs*16|1|0.14|ENSG00000115525|chr2:85840279-85840289|GTAGTGCAAAG/-|frameshift_variant	ST3GAL5|p.P371Lfs*16|1|0.14|ENSG00000115525|chr2:85840279-85840289|GTAGTGCAAAG/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	583.2871704101562	2	583.285463	1164.55637	0.26736	0.00015595	-0.19806	-0.00011552	0.069304	4.0424E-05	583.2851029133095	67.191	0.47504	67.191	67.014	67.489	0					28	11	3	0	0	0	0.11471	1	6278	6278		93.195	18.94	1	1822300			10732	3104	8815	8825	11606	11606					-0.01932346533430973
FEHTILTIF	9	Unmodified	_FEHTILTIF_					0	0	0			REV__tr|A0A7D6ZWF9|A0A7D6ZWF9_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07780PE=4SV=1	REV__tr|A0A7D6ZWF9|A0A7D6ZWF9_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07780PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	560.8078002929688	2	560.8055	1119.59645	2.2065	0.0012374	-0.4755	-0.00026666	1.731	0.00097077	560.8052285356309	127.07	2.8987	127.07	126.69	129.59	0					222	62	5	0	0	0	0.16524	2	14777	14777;14874		82.305	15.876	1	31631000	+		10733	32283	8816	8826	11607;11608	11607					0.04143200137150416
FEIAKGENII	10	Unmodified	_FEIAKGENII_					0	0	0		tr|A0A7D6VQC6|A0A7D6VQC6_9CLOTImmA/IrrEfamilymetallo-endopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20150PE=4SV=1	tr|A0A7D6VQC6|A0A7D6VQC6_9CLOTImmA/IrrEfamilymetallo-endopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20150PE=4SV=1	tr|A0A7D6VQC6|A0A7D6VQC6_9CLOTImmA/IrrEfamilymetallo-endopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20150PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3132934570312	2	567.313689	1132.61282	-0.21045	-0.00011939	0.050668	2.8744E-05	-0.15978	-9.0647E-05	567.3136020936813	114.37	1.1348	114.25	113.96	115.1	-0.11777					58	22	5	0	0	0	0.45822	1	10871	10871		60.118	3.3972	1	241620			10734	34839	8817	8827	11609	11609					0.051822813032458726
FEIDTQRIEL	10	Unmodified	_FEIDTQRIEL_					0	0	0		ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	MULTI-MSMS	OvCa9_classI_Rep2	2	632.3336791992188	2	632.33261	1262.65067	-1.5172	-0.00095935	1.8034	0.0011404	0.28626	0.00018101	632.3336361765038	115.89	1.2376	115.77	115.59	116.83	-0.11777					50	24	3	0	0	0	0.22073	1	11065	11065		91.265	5.4034	1	125470			10735	3142	8818	8828	11610	11610					0.029847474980670086
FEIDTQRIEL	10	Unmodified	_FEIDTQRIEL_					0	0	0		ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	MULTI-MSMS	OvCa9_classI_Rep4_	4	632.331298828125	2	632.33261	1262.65067	-0.085659	-5.4165E-05	0.39726	0.0002512	0.3116	0.00019704	632.3328406052788	116.82	1.2035	115.46	115.14	116.35	-1.3645					59	22	4	0	0	0	0.44671	1	10911	10911		61.765	5.1323	1	136630			10736	3142	8818	8828	11611	11611					0.029847474980670086
FEIDTQRIEL	10	Unmodified	_FEIDTQRIEL_					0	0	0		ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	ENSG00000115963|ENST00000263895|RND3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	632.33261	1262.65067	-0.37105	-0.00023463	0.33054	0.00020901	-0.040511	-2.5616E-05	632.3327430868171	116.63	1.1885	115.59	115.29	116.48	-1.0414	-0.015577	-0.00096166	NaN	91.265	54	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151990			10737	3142	8818	8828							0.029847474980670086
FEIEFLQL	8	Unmodified	_FEIEFLQL_					0	0	0		ENST00000462342.1_1_7:106893500-106898861:-|nuORF	ENST00000462342.1_1_7:106893500-106898861:-|nuORF	ENST00000462342.1_1_7:106893500-106898861:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	519.7781982421875	2	519.778951	1037.54335	-0.52078	-0.00027069	-3.3911	-0.0017626	-3.9119	-0.0020333	519.7770142655106	69.202	0.81615	69.202	68.815	69.632	0					40	19	3	0	0	0	0.25402	1	6559	6559		115.46	9.0438	1	2245900			10738	12200	8819	8829	11612	11612					0.026078223544800494
FEIEKSRPL	9	Unmodified	_FEIEKSRPL_					0	0	0		VASH1|p.K145E|1|0.35|ENSG00000071246|chr14:76771224-76771224|A/G|missense_variant	VASH1|p.K145E|1|0.35|ENSG00000071246|chr14:76771224-76771224|A/G|missense_variant	VASH1|p.K145E|1|0.35|ENSG00000071246|chr14:76771224-76771224|A/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.8162231445312	2	559.813856	1117.61316	3.9956	0.0022368	-0.65346	-0.00036581	3.3422	0.001871	559.813249709843	134.7	2.6126	133.16	132.47	135.08	-1.5437					137	52	4	0	0	0	0.44568	1	13009	13009		47.657	1.6851	1	191680			10739	36299	8820	8830	11613	11613					0.05905701023107213
FEIGEMFLGL	10	Unmodified	_FEIGEMFLGL_					0	0	0		HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|152|3|anti-sense	HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|152|3|anti-sense	HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|152|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.2884521484375	2	578.291368	1154.56818	-7.0215	-0.0040605	4.0307	0.0023309	-2.9908	-0.0017295	578.2935937226971	160.38	4.1596	158.77	158.05	162.21	-1.6101					391	105	5	0	0	0	0.64063	1	16126	16126		37.159	12.956	1	1912500			10740	14411	8821	8831	11614	11614					-0.0029186583444698044
FEIKSLGIV	9	Unmodified	_FEIKSLGIV_					0	0	0		tr|A0A553SJY8|A0A553SJY8_NIACISporulationmembraneproteinYtaFOS=NialliacirculansOX=1397GN=ytaFPE=4SV=1	tr|A0A553SJY8|A0A553SJY8_NIACISporulationmembraneproteinYtaFOS=NialliacirculansOX=1397GN=ytaFPE=4SV=1	tr|A0A553SJY8|A0A553SJY8_NIACISporulationmembraneproteinYtaFOS=NialliacirculansOX=1397GN=ytaFPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.8173828125	2	503.302593	1004.59063	1.6467	0.00082879	0.20283	0.00010208	1.8495	0.00093087	503.3026500316095	98.157	0.29303	98.157	97.954	98.247	0					10	6	2	0	0	0	0.027433	1	10796	10796		42.396	0	1	306070			10741	33554	8822	8832	11615	11615					0.08852101625461728
FEIPYNLVK	9	Unmodified	_FEIPYNLVK_					0	0	0		tr|A0A7D7A2J6|A0A7D7A2J6_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20195PE=3SV=1	tr|A0A7D7A2J6|A0A7D7A2J6_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20195PE=3SV=1	tr|A0A7D7A2J6|A0A7D7A2J6_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20195PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.7761840820312	2	561.813325	1121.6121	0.30893	0.00017356	3.5355	0.0019863	3.8444	0.0021598	561.8156834642346	68.605	0.98528	68.605	68.077	69.063	0					33	23	2	0	0	0	0.027453	1	6517	6517		54.776	0	1	509480			10742	36081	8823	8833	11616	11616					0.05615486654187407
FEITENSAKL	10	Unmodified	_FEITENSAKL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	576.3029174804688	2	576.300778	1150.587	1.7157	0.00098878	0.12179	7.0185E-05	1.8375	0.001059	576.300848916692	87.61	1.2134	87.61	87.338	88.551	0					109	28	6	0	0	0	4.5439E-07	2	9276	9276;9305		204.79	73.756	1	11988000			10743	6293	8824	8834	11617;11618	11617					0.01773387060939058
FEITPPVVL	9	Unmodified	_FEITPPVVL_					0	0	0		ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000438918.1_1_2:204637659-204638058:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF;ENST00000434232.1_1_7:36858782-36858980:+|nuORF;ENST00000560329.1_1_15:73192182-73192437:-|nuORF;ENST00000423757.1_1_7:149031294-149031639:+|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	507.7988586425781	2	507.797143	1013.57973	0.76605	0.000389	1.3416	0.00068128	2.1077	0.0010703	507.79771031912594	151.81	2.0457	151.81	151.4	153.45	0					106	45	4	0	0	0	0.21395	2	17774	17774;17799		73.975	13.681	1	1456700			10744	7921	8825	8835	11619;11620	11619					0.07348699251178914
FEKDKKNPI	9	Unmodified	_FEKDKKNPI_					0	0	0		tr|A0A7D6ZXL1|A0A7D6ZXL1_9CLOTCarbamoylphosphatesynthaselargechainOS=ClostridiumintestinaleOX=36845GN=carBPE=3SV=1	tr|A0A7D6ZXL1|A0A7D6ZXL1_9CLOTCarbamoylphosphatesynthaselargechainOS=ClostridiumintestinaleOX=36845GN=carBPE=3SV=1	tr|A0A7D6ZXL1|A0A7D6ZXL1_9CLOTCarbamoylphosphatesynthaselargechainOS=ClostridiumintestinaleOX=36845GN=carBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	559.8147583007812	2	559.813856	1117.61316	-0.97774	-0.00054735	4.3631	0.0024425	3.3854	0.0018952	559.8160584775942	134.25	2.5628	133.13	132.52	135.08	-1.1226					125	51	4	0	0	0	0.55588	1	10876	10876		37.159	4.3467	1	225320			10745	35884	8826	8836	11621	11621					0.05905701023084475
FEKKYVATL	9	Unmodified	_FEKKYVATL_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	OvCa9_classI_Rep2	2	549.811767578125	2	549.813325	1097.6121	1.0707	0.00058869	-2.5432	-0.0013983	-1.4724	-0.00080957	549.8118594915368	65.959	2.5762	63.264	62.872	65.448	-2.6958					98	51	2	0	0	0	0.049969	5	5106	5082;5099;5106;5111;5118		118.74	41.969	1	960460			10746	4131	8827	8837	11622;11623;11624;11625;11626	11624					0.06719486654174034
FEKKYVATL	9	Unmodified	_FEKKYVATL_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.814697265625	2	549.813325	1097.6121	0.034147	1.8774E-05	-1.1853	-0.00065169	-1.1511	-0.00063291	549.8124590860016	66.829	0.93765	63.339	63	63.938	-3.4902					67	18	5	0	0	0	0.060996	3	4893	4868;4881;4893		112.41	35.637	1	1428600			10747	4131	8827	8837	11627;11628;11629	11629					0.06719486654174034
FEKLIVAL	8	Unmodified	_FEKLIVAL_					0	0	0		ENSG00000164111|ENST00000296511|ANXA5;ENST00000513428.5_1_4:122602814-122617744:-|nuORF	ENSG00000164111|ENST00000296511|ANXA5	ENSG00000164111|ENST00000296511|ANXA5	MULTI-MSMS	OvCa9_classI_Rep2	2	466.7947082519531	2	466.794404	931.574254	0.16431	7.67E-05	-0.27024	-0.00012615	-0.10593	-4.9446E-05	466.7941140608781	113.74	1.5796	113.63	113.37	114.95	-0.11777					73	31	3	0	0	0	0.40148	1	10811	10811		87.754	13.238	1	211490			10748	6410	8828	8838	11630	11630					0.10573020459389681
FEKLIVAL	8	Unmodified	_FEKLIVAL_					0	0	0		ENSG00000164111|ENST00000296511|ANXA5;ENST00000513428.5_1_4:122602814-122617744:-|nuORF	ENSG00000164111|ENST00000296511|ANXA5	ENSG00000164111|ENST00000296511|ANXA5	MULTI-MSMS	OvCa9_classI_Rep3	3	466.7939758300781	2	466.794404	931.574254	-0.11357	-5.3013E-05	0.08487	3.9617E-05	-0.028699	-1.3397E-05	466.7942385092766	114.69	1.6288	113.63	113.3	114.93	-1.055					72	32	3	0	0	0	0.40148	1	8485	8485		87.754	16.376	1	225500			10749	6410	8828	8838	11631	11631					0.10573020459389681
FEKLIVAL	8	Unmodified	_FEKLIVAL_					0	0	0		ENSG00000164111|ENST00000296511|ANXA5;ENST00000513428.5_1_4:122602814-122617744:-|nuORF	ENSG00000164111|ENST00000296511|ANXA5	ENSG00000164111|ENST00000296511|ANXA5	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.79461669921875	2	466.794404	931.574254	0.4922	0.00022975	-0.75227	-0.00035116	-0.26008	-0.0001214	466.7939124327931	115	1.6641	113.6	113.15	114.81	-1.3977					75	32	4	0	0	0	0.58851	1	10721	10721		66.429	6.0256	1	247140			10750	6410	8828	8838	11632	11632					0.10573020459389681
FEKLTKGSK	9	Unmodified	_FEKLTKGSK_					0	0	0			REV__ENST00000379752.5_1_1:157029186-157029948:-|nuORF	REV__ENST00000379752.5_1_1:157029186-157029948:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.7781372070312	2	519.303124	1036.5917	0.063244	3.2843E-05	-0.3658	-0.00018996	-0.30256	-0.00015712	519.3028129266751	113.13	0.9322	111.68	111.31	112.24	-1.4461					32	18	2	0	0	0	0.027462	1	10512	10512		39.253	5.7372	1	88240	+		10751	18609	8829	8839	11633	11633					0.07486315994378856
FEKLTKGSKL	10	Unmodified	_FEKLTKGSKL_					0	0	0			REV__ENST00000379752.5_1_1:157029186-157029948:-|nuORF	REV__ENST00000379752.5_1_1:157029186-157029948:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8424682617188	2	575.845156	1149.67576	-2.8608	-0.0016474	-0.58729	-0.00033819	-3.4481	-0.0019856	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.60504	1	14518	14518		41.427	2.1738	1	356230	+		10752	18609	8830	8840	11634	11634					0.10690847091291289
FEKLTMQLI	9	Oxidation (M)	_FEKLTM(Oxidation (M))QLI_		FEKLTM(1)QLI		FEKLTM(46)QLI	0	0	1			REV__ENSG00000092200|ENST00000400017|RPGRIP1	REV__ENSG00000092200|ENST00000400017|RPGRIP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	569.8131713867188	2	569.812467	1137.61038	-0.6604	-0.0003763	3.901	0.0022228	3.2406	0.0018465	569.8143908059645	118	0.89415	116.66	116.42	117.31	-1.3444					33	16	3	0	0	0	0.46356	1	11051	11051		45.972	6.7194	1	75365	+		10753	17265	8831	8841	11635	11635		406			0.04708109573925867
FEKLTMQLI	9	Oxidation (M)	_FEKLTM(Oxidation (M))QLI_					0	0	1			REV__ENSG00000092200|ENST00000400017|RPGRIP1	REV__ENSG00000092200|ENST00000400017|RPGRIP1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	569.812467	1137.61038	-0.88565	-0.00050466	4.3467	0.0024768	3.461	0.0019721	569.8144556521338	117.72	1.0408	116.69	116.44	117.48	-1.0324	0.01477	0.00033564	NaN	45.972	35	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64414	+		10754	17265	8831	8841				406			0.04708109573925867
FEKLTMQLI	9	Oxidation (M)	_FEKLTM(Oxidation (M))QLI_					0	0	1			REV__ENSG00000092200|ENST00000400017|RPGRIP1	REV__ENSG00000092200|ENST00000400017|RPGRIP1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	569.812467	1137.61038	-0.6604	-0.0003763	3.901	0.0022228	3.2406	0.0018465	569.8143908059645	118	0.89415	116.66	116.42	117.31	-1.3444	-0.01477	-0.00017231	NaN	45.972	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75365	+		10755	17265	8831	8841				406			0.04708109573925867
FEKSRKDI	8	Unmodified	_FEKSRKDI_					0	0	0			REV__ENSG00000164430|ENST00000370315|CGAS	REV__ENSG00000164430|ENST00000370315|CGAS	MULTI-MSMS	OvCa99_classI_Rep5	1	511.7879638671875	2	511.785099	1021.55564	2.1186	0.0010843	4.3324	0.0022172	6.451	0.0033015	511.7871361333269	83.986	0.42099	83.986	83.714	84.135	0					22	9	3	0	0	0	0.3457	1	8755	8755		98.629	5.4339	1	1140800	+		10756	20988	8832	8842	11636	11636					0.04572858817527958
FEKTLSQAI	9	Unmodified	_FEKTLSQAI_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MSMS	OvCa99_classI_Rep5	1	518.789306640625	2	518.787307	1035.56006	0.3455	0.00017924	2.4215	0.0012562	2.767	0.0014355	518.7886960694296	151.8	1.0014	151.8	151.4	152.4	0					43	20	3	0	0	0	0.40818	1	17812	17812		51.193	3.2771	1	223380			10757	6353	8833	8843	11637	11637					0.04370323240414109
FELALLPVN	9	Unmodified	_FELALLPVN_					0	0	0			REV__nc|ENSG00000168454|Q86VQ3-3|TXNDC2	REV__nc|ENSG00000168454|Q86VQ3-3|TXNDC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.7589416503906	2	508.294768	1014.57498	0.84137	0.00042766	0.49863	0.00025345	1.34	0.00068112	508.294994003545	158.41	0.45845	158.41	158.15	158.61	0					12	9	2	0	0	0	0.027462	1	18543	18543		16.473	0	1	26755	+		10758	28992	8834	8844	11638	11638					0.06827815108431423
FELALQELL	9	Unmodified	_FELALQELL_					0	0	0			REV__ENST00000466480.1_1_1:114448336-114454776:+|nuORF	REV__ENST00000466480.1_1_1:114448336-114454776:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	539.2999267578125	2	538.305332	1074.59611	-0.25189	-0.0001356	2.1272	0.0011451	1.8753	0.0010095	538.8081620532394	111.35	0.89491	109.84	109.47	110.37	-1.5111					23	16	2	0	0	0	0.027461	1	10234	10234		49.442	15.269	1	99983	+		10759	18410	8835	8845	11639	11639					0.06179780417301117
FELAQKMLL	9	Unmodified	_FELAQKMLL_					0	0	0			REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B	REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.8086547851562	2	546.809728	1091.6049	-1.1771	-0.00064363	-2.1879	-0.0011964	-3.365	-0.00184	546.8084190590075	117.84	2.0896	116.49	116.16	118.25	-1.3444					94	39	3	0	0	0	0.51865	1	11088	11088		40.778	3.7497	1	470000	+		10760	19288	8836	8846	11640	11640					0.06276430782122588
FELDEQKNIK	10	Unmodified	_FELDEQKNIK_					0	0	0			REV__ENSG00000150048|ENST00000315330|CLEC1A	REV__ENSG00000150048|ENST00000315330|CLEC1A	MULTI-MSMS	OvCa9_classI_Rep4_	4	632.3310546875	2	632.33261	1262.65067	-0.085659	-5.4165E-05	0.39726	0.0002512	0.3116	0.00019704	632.3328406052788	116.82	1.2035	115.46	115.14	116.35	-1.3645					59	22	4	0	0	0	0.36605	1	10924	10924		72.879	9.3454	1	136630	+		10761	20183	8837	8847	11641	11641					0.029847474980442712
FELDPNKCI	9	Unmodified	_FELDPNKCI_					0	0	0			REV__ENSG00000134323|ENST00000281043|MYCN	REV__ENSG00000134323|ENST00000281043|MYCN	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.8019409179688	2	539.765517	1077.51648	1.8068	0.00097523	-2.8758	-0.0015523	-1.0691	-0.00057704	539.7637837673523	117.23	0.65026	117.23	116.91	117.56	0					32	13	3	0	0	0	0.027411	1	13448	13448		74.255	29.878	1	431190	+		10762	19195	8838	8848	11642	11642					-0.019176095283455652
FELEELGKLI	10	Unmodified	_FELEELGKLI_					0	0	0			REV__ENSG00000100104|ENST00000215917|SRRD;REV__ENST00000471799.1_1_22:26886916-26887635:+|nuORF	REV__ENSG00000100104|ENST00000215917|SRRD	MULTI-MSMS	OvCa9_classI_Rep4_	4	595.8360595703125	2	595.836997	1189.65944	-0.079941	-4.7632E-05	-0.68225	-0.00040651	-0.76219	-0.00045414	595.8365302711604	123.71	2.0365	122.32	121.98	124.01	-1.3908					87	39	3	0	0	0	0.32926	1	11713	11713		77.318	11.852	1	81507	+		10763	17366;26293	8839	8849	11643	11643					0.07219721134538304
FELEELGKLI	10	Unmodified	_FELEELGKLI_					0	0	0			REV__ENSG00000100104|ENST00000215917|SRRD;REV__ENST00000471799.1_1_22:26886916-26887635:+|nuORF	REV__ENSG00000100104|ENST00000215917|SRRD	MULTI-MATCH	OvCa9_classI_Rep3	3		2	595.836997	1189.65944	2.1003	0.0012514	-2.9746	-0.0017724	-0.8743	-0.00052094	595.8354359014211	123.31	2.0222	122.27	122.05	124.07	-1.0377	-0.0063045	-0.0023453	NaN	77.318	85	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72472	+		10764	17366;26293	8839	8849							0.07219721134538304
FELESGNTLIF	11	Unmodified	_FELESGNTLIF_					0	0	0			REV__sp|P16790|VPAP_HCMVADNApolymeraseprocessivityfactorOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL44PE=1SV=1	REV__sp|P16790|VPAP_HCMVADNApolymeraseprocessivityfactorOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL44PE=1SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	635.8234252929688	2	635.321711	1268.62887	1.5727	0.00099916	-3.7203	-0.0023636	-2.1476	-0.0013644	635.3191913572956	144.23	1.618	144.23	143.91	145.53	0					102	33	4	0	0	0	0.56391	1	16952	16952		47.96	3.8427	1	1263800	+		10765	29396	8840	8850	11644	11644					0.005299427494719566
FELLHKEML	9	Unmodified	_FELLHKEML_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000414411.3_1_11:61081295-61081943:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	OvCa99_classI_Rep5	1	580.3176879882812	2	580.312635	1158.61072	1.521	0.00088263	0.4283	0.00024855	1.9493	0.0011312	580.3126885848424	93.752	0.92513	93.752	93.508	94.433	0					52	21	4	0	0	0	0.010478	1	10196	10196		167.23	47.672	1	3345100			10766	6859	8841	8851	11645	11645					0.037755292937617924
FELNQLKLE	9	Unmodified	_FELNQLKLE_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;ABCA13|p.H2244Nfs*10|1|0.05|ENSG00000179869|chr7:48276379-48276380|-/TAACCTTATCTTGAACAATATAAGGTTAATGAAATTCATTATA|frameshift_variant;ABCA13|p.L1709Afs*18|1|0.2|ENSG00000179869|chr7:48274789-48274790|-/A|frameshift_variant	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.313232421875	2	567.313689	1132.61282	0.9405	0.00053356	-1.4514	-0.00082342	-0.51093	-0.00028986	567.3126999442823	115.55	1.0391	114.15	113.82	114.86	-1.3977					45	20	4	0	0	0	0.16562	1	10751	10751		82.241	4.9229	1	282240			10767	7844	8842	8852	11646	11646					0.051822813032458726
FELNSFEQL	9	Unmodified	_FELNSFEQL_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MULTI-MSMS	OvCa99_classI_Rep5	1	563.7755126953125	2	563.774396	1125.53424	2.4789	0.0013975	-0.44625	-0.00025159	2.0326	0.0011459	563.773986699834	92.716	0.66422	92.716	92.472	93.136	0					27	15	3	0	0	0	0.3076	1	10027	10027		62.107	5.3864	1	1811300			10768	15021	8843	8853	11647	11647					-0.023505710018298487
FELRARYLI	9	Unmodified	_FELRARYLI_					0	0	0		ENSG00000175105|ENST00000636215|ZNF654;ENST00000473136.4_2_3:88108451-88184391:+|nuORF	ENSG00000175105|ENST00000636215|ZNF654	ENSG00000175105|ENST00000636215|ZNF654	MULTI-SECPEP	OvCa9_classI_Rep2	2	591.3195190429688	2	590.84549	1179.67643	-0.69556	-0.00041097	0.084325	4.9823E-05	-0.61123	-0.00036114	590.845518958216	105.65	1.2472	105.22	104.95	106.2	-0.43642					56	24	3	0	0	0	0.027462	1	9832	9832		21.96	0	1	100410			10769	7516	8844	8854	11648	11648					0.0937768653097919
FELVDARIPQS	11	Unmodified	_FELVDARIPQS_					0	0	0		tr|A0A553SP31|A0A553SP31_NIACIRibosomebiogenesisGTPaseAOS=NialliacirculansOX=1397GN=ylqFPE=3SV=1	tr|A0A553SP31|A0A553SP31_NIACIRibosomebiogenesisGTPaseAOS=NialliacirculansOX=1397GN=ylqFPE=3SV=1	tr|A0A553SP31|A0A553SP31_NIACIRibosomebiogenesisGTPaseAOS=NialliacirculansOX=1397GN=ylqFPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	636.8759155273438	2	637.840602	1273.66665	1.3543	0.00086382	1.0341	0.00065958	2.3884	0.0015234	637.8415243219936	139.29	0.53281	139.29	138.93	139.46	0					21	10	3	0	0	0	0.025861	1	16230	16230		17.468	0	1	77059			10770	33997	8845	8855	11649	11649					0.040764537349332386
FELVGERSI	9	Unmodified	_FELVGERSI_					0	0	0		nc|ENSG00000203710|P17927|CR1;ENSG00000203710|ENST00000367049|CR1	nc|ENSG00000203710|P17927|CR1	nc|ENSG00000203710|P17927|CR1	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.2828369140625	2	525.284931	1048.55531	-0.11003	-5.7795E-05	-0.50009	-0.00026269	-0.61012	-0.00032049	525.2846666449118	114.93	1.879	113.53	112.83	114.71	-1.3977					101	36	4	0	0	0	0.51865	1	10744	10744		40.778	5.1599	1	1115000			10771	8925	8846	8856	11650	11650					0.03297439097673305
FELVYEELL	9	Unmodified	_FELVYEELL_					0	0	0		CON__Q3T052;ITIH4|p.R294Wfs*34|1|0.08|ENSG00000055955|chr3:52824541-52824562|GGATCTTGATTAGGGCTTCCCG/-|frameshift_variant;ENST00000468472.1_1_3:52853923-52864679:-|nuORF;nc|ENSG00000055955|Q14624-4|ITIH4;nc|ENSG00000055955|Q14624-3|ITIH4;nc|ENSG00000055955|Q14624-2|ITIH4;ENSG00000055955|ENST00000266041|ITIH4	CON__Q3T052	CON__Q3T052	MULTI-MSMS	OvCa99_classI_Rep5	1	577.8049926757812	2	577.802623	1153.59069	2.1051	0.0012164	1.434	0.00082854	3.5391	0.0020449	577.8033417945385	99.529	1.7334	99.529	99.036	100.77	0					86	41	4	0	0	0	0.22961	1	11015	11015		71.296	2.811	1	7376800		+	10772	650	8847	8857	11651	11651					0.02004056834812218
FEMKTLQI	8	Unmodified	_FEMKTLQI_					0	0	0			REV__tr|A0A7D6VUJ4|A0A7D6VUJ4_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_01850PE=4SV=1	REV__tr|A0A7D6VUJ4|A0A7D6VUJ4_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_01850PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.279296875	2	505.272978	1008.5314	0.93347	0.00047166	2.303	0.0011636	3.2364	0.0016353	505.2740159377766	85.88	1.5309	83.234	82.848	84.379	-2.6463					79	30	4	0	0	0	0.38688	2	7234	7234;7243		90.601	16.346	1	1151800	+		10773	31684	8848	8858	11652;11653	11652					0.027478823396563712
FENLKISIPQ	10	Unmodified	_FENLKISIPQ_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OvCa99_classI_Rep5	1	594.8380126953125	2	594.834788	1187.65502	2.5779	0.0015334	3.6995	0.0022006	6.2774	0.003734	594.8368146296689	94.802	0.68312	94.802	94.56	95.244	0					43	15	4	0	0	0	0.32926	1	10345	10345		77.318	7.69	1	2654700			10774	1159	8849	8859	11654	11654					0.06870256711613365
FENLYILLF	9	Unmodified	_FENLYILLF_					0	0	0			REV__nc|ENSG00000171680|O94827-4|PLEKHG5	REV__nc|ENSG00000171680|O94827-4|PLEKHG5	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.8330688476562	2	586.323525	1170.6325	1.6344	0.00095829	-1.8955	-0.0011114	-0.26112	-0.0001531	586.3220108716775	126.38	0.60764	126.38	126.04	126.65	0					24	12	3	0	0	0	0.027447	1	14641	14641		66.429	20.477	1	454190	+		10775	21636	8850	8860	11655	11655					0.05400657313998636
FENQAGTL	8	Unmodified	_FENQAGTL_					0	0	0			REV__ENSG00000139351|ENST00000392924|SYCP3	REV__ENSG00000139351|ENST00000392924|SYCP3	MULTI-SECPEP	OvCa9_classI_Rep3	3	439.7532043457031	2	440.213975	878.413397	0.67468	0.00029701	-0.93191	-0.00041024	-0.25723	-0.00011323	440.21351588599805	104.18	0.72693	102.75	102.55	103.28	-1.4347					18	13	2	0	0	0	0.028476	1	7250	7250		37.159	5.2042	1	10018	+		10776	19605	8851	8861	11656	11656					-0.030673539246663495
FENRRSFKCIW	11	Unmodified	_FENRRSFKCIW_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.2878723144531	3	495.918839	1484.73469	1.3143	0.00065176	-0.72263	-0.00035837	0.59162	0.0002934	495.9184491631011	109.15	0.30811	109.15	109.02	109.33	0					10	6	2	0	0	0	0.026277	1	12383	12383		23.378	17.057	1	84319			10777	8413	8852	8862	11657	11657					0.011710001139817905
FEPGLVRKLD	10	Unmodified	_FEPGLVRKLD_					0	0	0		tr|A0A553SKM6|A0A553SKM6_NIACIPutativepyruvate,phosphatedikinaseregulatoryproteinOS=NialliacirculansOX=1397GN=CEQ21_19075PE=3SV=1	tr|A0A553SKM6|A0A553SKM6_NIACIPutativepyruvate,phosphatedikinaseregulatoryproteinOS=NialliacirculansOX=1397GN=CEQ21_19075PE=3SV=1	tr|A0A553SKM6|A0A553SKM6_NIACIPutativepyruvate,phosphatedikinaseregulatoryproteinOS=NialliacirculansOX=1397GN=CEQ21_19075PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	587.3352661132812	2	587.334956	1172.65536	2.3938	0.001406	-0.4552	-0.00026735	1.9386	0.0011386	587.3338431464357	116.19	0.90776	116.19	115.82	116.73	0					43	19	5	0	0	0	0.39172	1	13295	13295		69.628	4.1622	1	575350			10778	33633	8853	8863	11658	11658					0.07593676431474705
FEPHRSIK	8	Unmodified	_FEPHRSIK_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.Q2480Lfs*11|1|0.07|ENSG00000103657|chr15:63674749-63674750|-/A|frameshift_variant;ENST00000559886.1_1_15:64045105-64067822:-|nuORF	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7843933105469	2	507.279983	1012.54541	-1.0865	-0.00055118	1.3776	0.00069885	0.29112	0.00014768	507.28021551248446	81.647	2.239	78.95	78.164	80.403	-2.6965					140	45	5	0	0	0	0.60331	1	6733	6733		63.306	0	1	2095800			10779	2336	8854	8864	11659	11659					0.03964295882951774
FEPLWKVIF	9	Unmodified	_FEPLWKVIF_					0	0	0		tr|A0A553SGG2|A0A553SGG2_NIACISporegernimationproteinKCOS=NialliacirculansOX=1397GN=CEQ21_10810PE=3SV=1	tr|A0A553SGG2|A0A553SGG2_NIACISporegernimationproteinKCOS=NialliacirculansOX=1397GN=CEQ21_10810PE=3SV=1	tr|A0A553SGG2|A0A553SGG2_NIACISporegernimationproteinKCOS=NialliacirculansOX=1397GN=CEQ21_10810PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	589.83349609375	2	589.83406	1177.65357	1.9916	0.0011747	-3.395	-0.0020025	-1.4034	-0.00082778	589.8318264211657	134.03	0.66032	134.03	133.77	134.43	0					29	13	3	0	0	0	0.31747	1	15588	15588		60.972	4.2509	1	304230			10780	33153	8855	8865	11660	11660					0.07184667413503121
FEPLWKVIF	9	Unmodified	_FEPLWKVIF_					0	0	0		tr|A0A553SGG2|A0A553SGG2_NIACISporegernimationproteinKCOS=NialliacirculansOX=1397GN=CEQ21_10810PE=3SV=1	tr|A0A553SGG2|A0A553SGG2_NIACISporegernimationproteinKCOS=NialliacirculansOX=1397GN=CEQ21_10810PE=3SV=1	tr|A0A553SGG2|A0A553SGG2_NIACISporegernimationproteinKCOS=NialliacirculansOX=1397GN=CEQ21_10810PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	589.83406	1177.65357	-1.8266	-0.0010774	-1.796	-0.0010593	-3.6226	-0.0021368	589.8329987971018	135.03	0.39571	133.91	133.7	134.1	-1.1226	-0.009889	0.0023183	NaN	60.972	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9763.5			10781	33153	8855	8865							0.07184667413503121
FEPLWKVIF	9	Unmodified	_FEPLWKVIF_					0	0	0		tr|A0A553SGG2|A0A553SGG2_NIACISporegernimationproteinKCOS=NialliacirculansOX=1397GN=CEQ21_10810PE=3SV=1	tr|A0A553SGG2|A0A553SGG2_NIACISporegernimationproteinKCOS=NialliacirculansOX=1397GN=CEQ21_10810PE=3SV=1	tr|A0A553SGG2|A0A553SGG2_NIACISporegernimationproteinKCOS=NialliacirculansOX=1397GN=CEQ21_10810PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	589.83406	1177.65357	2.7549	0.001625	-6.3546	-0.0037482	-3.5996	-0.0021232	589.8304324048119	135.35	0.64331	133.81	133.51	134.15	-1.5437	-0.1055	-0.0030593	NaN	60.972	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18663			10782	33153	8855	8865							0.07184667413503121
FEPPLYGQR	9	Unmodified	_FEPPLYGQR_					0	0	0			REV__ENST00000575981.1_1_16:3022956-3024767:-|nuORF	REV__ENST00000575981.1_1_16:3022956-3024767:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	554.3284912109375	2	553.785099	1105.55564	1.9397	0.0010742	0.27638	0.00015305	2.2161	0.0012272	554.2854962893447	91.168	0.68998	89.933	89.689	90.379	-1.2355					27	12	4	0	0	0	0.027462	1	8083	8083		47.657	17.816	1	51032	+		10783	15930	8856	8866	11661	11661					0.007088588175065524
FEPRYLVNL	9	Unmodified	_FEPRYLVNL_					0	0	0			REV__nc|ENSG00000161270|O60500-2|NPHS1	REV__nc|ENSG00000161270|O60500-2|NPHS1	MULTI-MSMS	OvCa99_classI_Rep5	1	575.8132934570312	2	575.816399	1149.61824	1.4358	0.00082678	-0.053693	-3.0917E-05	1.3821	0.00079586	575.8163644826128	122.75	0.78494	122.75	122.45	123.23	0					33	16	3	0	0	0	0.42676	1	14164	14164		49.442	0	1	197150	+		10784	20694	8857	8867	11662	11662					0.04942004885697315
FEQQMVEKL	9	Unmodified	_FEQQMVEKL_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	OvCa99_classI_Rep5	1	576.2940673828125	2	576.291899	1150.56925	1.841	0.0010609	0.052531	3.0273E-05	1.8935	0.0010912	576.2918712876191	82.786	0.94097	82.786	82.522	83.463	0					41	21	3	0	0	0	0.047422	1	8586	8586		120.31	5.4114	1	1585300			10785	7133	8858	8868	11663	11663					-1.6514655499122455E-05
FEQSLLLTL	9	Unmodified	_FEQSLLLTL_					0	0	0			REV__nc|ENSG00000107021|Q9NVG8-3|TBC1D13	REV__nc|ENSG00000107021|Q9NVG8-3|TBC1D13	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.7911987304688	2	532.305332	1062.59611	-1.7716	-0.00094304	1.2529	0.00066693	-0.51871	-0.00027611	532.3059227823459	106.43	0.50932	104.42	104.21	104.72	-2.0161					16	9	2	0	0	0	0.027426	1	9677	9677		56.721	17.468	1	27076	+		10786	17833	8859	8869	11664	11664					0.0673178041729443
FEQVKGITL	9	Unmodified	_FEQVKGITL_					0	0	0		nc|ENSG00000151726|P33121-3|ACSL1;nc|ENSG00000151726|P33121-2|ACSL1;ENSG00000151726|ENST00000281455|ACSL1;ENST00000513001.5_1_4:185678281-185679089:-|nuORF	nc|ENSG00000151726|P33121-3|ACSL1	nc|ENSG00000151726|P33121-3|ACSL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.7990112304688	2	517.797675	1033.5808	0.29935	0.000155	-0.25609	-0.0001326	0.043261	2.2401E-05	517.7972164221034	96.473	1.8681	94.047	93.709	95.577	-2.4256					69	36	4	0	0	0	0.18887	1	8519	8519		78.264	0.9462	1	311320			10787	15095	8860	8870	11665	11665					0.06534913620112093
FEQVKGITL	9	Unmodified	_FEQVKGITL_					0	0	0		nc|ENSG00000151726|P33121-3|ACSL1;nc|ENSG00000151726|P33121-2|ACSL1;ENSG00000151726|ENST00000281455|ACSL1;ENST00000513001.5_1_4:185678281-185679089:-|nuORF	nc|ENSG00000151726|P33121-3|ACSL1	nc|ENSG00000151726|P33121-3|ACSL1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	517.797675	1033.5808	-0.0075309	-3.8995E-06	-0.20899	-0.00010821	-0.21652	-0.00011211	517.7972708340072	95.12	1.9324	94.091	93.775	95.707	-1.0281	0.026138	2.1206E-05	NaN	78.264	74	38	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	251550			10788	15095	8860	8870							0.06534913620112093
FEQVKGITL	9	Unmodified	_FEQVKGITL_					0	0	0		nc|ENSG00000151726|P33121-3|ACSL1;nc|ENSG00000151726|P33121-2|ACSL1;ENSG00000151726|ENST00000281455|ACSL1;ENST00000513001.5_1_4:185678281-185679089:-|nuORF	nc|ENSG00000151726|P33121-3|ACSL1	nc|ENSG00000151726|P33121-3|ACSL1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	517.797675	1033.5808	-0.30487	-0.00015786	-0.21726	-0.0001125	-0.52213	-0.00027036	517.7974148856275	95.886	2.016	94.057	93.78	95.796	-1.8286	-0.0082501	1.2641E-05	NaN	78.264	79	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	354790			10789	15095	8860	8870							0.06534913620112093
FEREGVRINDR	11	Unmodified	_FEREGVRINDR_					0	0	0		TECTA|p.N1856Ifs*57|1|0.07|ENSG00000109927|chr11:121166757-121166757|G/-|frameshift_variant;ENSG00000109927|ENST00000392793|TECTA	TECTA|p.N1856Ifs*57|1|0.07|ENSG00000109927|chr11:121166757-121166757|G/-|frameshift_variant	TECTA|p.N1856Ifs*57|1|0.07|ENSG00000109927|chr11:121166757-121166757|G/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.7696228027344	3	464.24438	1389.71131	-0.17135	-7.955E-05	-1.1091	-0.00051489	-1.2804	-0.00059444	464.243562055632	35.557	0.59915	35.557	35.293	35.892	0					16	12	2	0	0	0	0.02595	1	1814	1814		33.039	0	1	17119			10790	2743	8861	8871	11666	11666					0.03204277601003014
FERIKKID	8	Unmodified	_FERIKKID_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|152|3|sense	L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|152|3|sense	L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|152|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2681274414062	2	524.811116	1047.60768	2.1261	0.0011158	0.35761	0.00018768	2.4837	0.0013035	524.8112132929444	94.829	0.42888	94.829	94.604	95.033	0					22	9	3	0	0	0	0.028476	1	10342	10342		26.693	19.003	1	419490			10791	14675	8862	8872	11667	11667					0.08578022231290561
FERLIVAL	8	Unmodified	_FERLIVAL_					0	0	0		nc|ENSG00000276850|P13928-2|ANXA8;nc|ENSG00000276850|P13928-3|ANXA8;ENSG00000265190|ENST00000585281|ANXA8;ENSG00000264230|ENST00000619162|ANXA8L1;nc|ENSG00000264230|Q5VT79-2|ANXA8L1	nc|ENSG00000276850|P13928-2|ANXA8	nc|ENSG00000276850|P13928-2|ANXA8	MULTI-MSMS	OvCa9_classI_Rep2	2	480.79742431640625	2	480.797478	959.580402	-0.62495	-0.00030048	0.86212	0.0004145	0.23716	0.00011403	480.7976122112674	115	2.3234	114.88	114.5	116.83	-0.11777					104	46	4	0	0	0	0.58851	2	10960	10943;10960		66.429	11.653	1	301760			10792	9517	8863	8873	11668;11669	11669					0.09899538690910958
FERLIVAL	8	Unmodified	_FERLIVAL_					0	0	0		nc|ENSG00000276850|P13928-2|ANXA8;nc|ENSG00000276850|P13928-3|ANXA8;ENSG00000265190|ENST00000585281|ANXA8;ENSG00000264230|ENST00000619162|ANXA8L1;nc|ENSG00000264230|Q5VT79-2|ANXA8L1	nc|ENSG00000276850|P13928-2|ANXA8	nc|ENSG00000276850|P13928-2|ANXA8	MULTI-MSMS	OvCa9_classI_Rep3	3	480.7971496582031	2	480.797478	959.580402	-0.37436	-0.00017999	0.20674	9.9399E-05	-0.16763	-8.0595E-05	480.7973622689828	116.04	2.9694	115	114.65	117.62	-1.0414					124	59	3	0	0	0	0.6962	2	8640	8640;8651		44.117	3.6435	1	286570			10793	9517	8863	8873	11670;11671	11670					0.09899538690910958
FERLIVAL	8	Unmodified	_FERLIVAL_					0	0	0		nc|ENSG00000276850|P13928-2|ANXA8;nc|ENSG00000276850|P13928-3|ANXA8;ENSG00000265190|ENST00000585281|ANXA8;ENSG00000264230|ENST00000619162|ANXA8L1;nc|ENSG00000264230|Q5VT79-2|ANXA8L1	nc|ENSG00000276850|P13928-2|ANXA8	nc|ENSG00000276850|P13928-2|ANXA8	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.79705810546875	2	480.797478	959.580402	-0.10363	-4.9827E-05	-0.62992	-0.00030286	-0.73355	-0.00035269	480.79694462562895	116.33	2.3302	114.97	114.65	116.98	-1.3645					106	44	4	0	0	0	0.64026	1	10882	10882		55.504	13.108	1	303270			10794	9517	8863	8873	11672	11672					0.09899538690910958
FERLRRALELR	11	Unmodified	_FERLRRALELR_					0	0	0		SLTM|p.M629L|1|0.06|ENSG00000137776|chr15:58892910-58892910|T/A|missense_variant	SLTM|p.M629L|1|0.06|ENSG00000137776|chr15:58892910-58892910|T/A|missense_variant	SLTM|p.M629L|1|0.06|ENSG00000137776|chr15:58892910-58892910|T/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.9587097167969	3	486.959915	1457.85791	-6.3941	-0.0031137	4.317	0.0021022	-2.0771	-0.0010115	486.96182500070705	161.6	3.2719	159.97	158.36	161.63	-1.6239					171	80	4	0	0	0	0.72552	1	15910	15910		8.7993	2.1397	1	99720			10795	32839	8864	8874	11673	11673					0.14729999556743678
FERMKRLLRPL	11	Unmodified	_FERMKRLLRPL_					0	0	0			REV__ENST00000237654.8_1_4:77977239-77977427:-|nuORF	REV__ENST00000237654.8_1_4:77977239-77977427:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	486.95843505859375	3	486.962379	1457.86531	-6.9542	-0.0033864	0.032958	1.6049E-05	-6.9213	-0.0033704	486.9622029105925	158.45	2.296	157.18	156.33	158.63	-1.267					151	56	3	0	0	0	0.72507	1	13675	13675		14.694	1.1857	1	50747	+		10796	23812	8865	8875	11674	11674					0.15469015832809418
FERMKRLLRPL	11	Unmodified	_FERMKRLLRPL_					0	0	0			REV__ENST00000237654.8_1_4:77977239-77977427:-|nuORF	REV__ENST00000237654.8_1_4:77977239-77977427:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	487.2925720214844	3	486.962379	1457.86531	-7.2825	-0.0035463	0.20684	0.00010072	-7.0756	-0.0034456	486.9623381995862	161.08	3.4384	159.71	158.52	161.96	-1.3692					219	70	4	0	0	0	0.72493	1	14064	14064		16.53	3.5724	1	133400	+		10797	23812	8865	8875	11675	11675					0.15469015832809418
FERMKRLLRPL	11	Unmodified	_FERMKRLLRPL_					0	0	0			REV__ENST00000237654.8_1_4:77977239-77977427:-|nuORF	REV__ENST00000237654.8_1_4:77977239-77977427:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.9585266113281	3	486.962379	1457.86531	-6.394	-0.0031137	-0.74408	-0.00036234	-7.1381	-0.003476	486.96182500070705	161.6	3.2719	159.97	158.36	161.63	-1.6239					171	80	4	0	0	0	0.7252	1	15997	15997		12.957	0.7508	1	99720	+		10798	23812	8865	8875	11676	11676					0.15469015832809418
FERMKRLLRPL	11	Unmodified	_FERMKRLLRPL_					0	0	0			REV__ENST00000237654.8_1_4:77977239-77977427:-|nuORF	REV__ENST00000237654.8_1_4:77977239-77977427:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	486.962379	1457.86531	-5.7811	-0.0028152	-1.1123	-0.00054163	-6.8934	-0.0033568	486.9615551814256	158.76	1.69	157.17	156.23	157.92	-1.5858	-0.0042188	-0.00099188	NaN	14.694	94	50	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59311	+		10799	23812	8865	8875							0.15469015832809418
FERQTAVL	8	Unmodified	_FERQTAVL_					0	0	0		ENSG00000171431|ENST00000167588|KRT20;CON__P35900	ENSG00000171431|ENST00000167588|KRT20	ENSG00000171431|ENST00000167588|KRT20	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.2667541503906	2	482.266542	962.51853	-0.33974	-0.00016384	-0.77675	-0.0003746	-1.1165	-0.00053844	482.2658388333067	76.377	1.8145	73.438	72.985	74.799	-2.9389					82	37	3	0	0	0	0.62474	1	6049	6049		58.782	0.97068	1	1177500		+	10800	629	8866	8876	11677	11677					0.03577187271753246
FERTFNLKFIR	11	Unmodified	_FERTFNLKFIR_					0	0	0		nc|ENSG00000136720|O60243-2|HS6ST1;ENSG00000136720|ENST00000259241|HS6ST1	nc|ENSG00000136720|O60243-2|HS6ST1	nc|ENSG00000136720|O60243-2|HS6ST1	MULTI-MSMS	OvCa99_classI_Rep5	1	490.94671630859375	3	490.945383	1469.81432	1.5031	0.00073793	0.22471	0.00011032	1.7278	0.00084825	490.9455151812638	113.75	1.1514	113.75	113.5	114.65	0					82	25	4	0	0	0	0.36485	1	12974	12974		63.694	16.466	1	6497600			10801	4508	8867	8877	11678	11678					0.09820390059576312
FERTFNLKFIR	11	Unmodified	_FERTFNLKFIR_					0	0	0		nc|ENSG00000136720|O60243-2|HS6ST1;ENSG00000136720|ENST00000259241|HS6ST1	nc|ENSG00000136720|O60243-2|HS6ST1	nc|ENSG00000136720|O60243-2|HS6ST1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	490.945383	1469.81432	0.67948	0.00033359	-0.9836	-0.0004829	-0.30412	-0.00014931	490.9448644303064	114.02	1.3815	113.9	113.61	115	-0.11777	0.075467	-0.00065593	NaN	63.694	78	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165940			10802	4508	8867	8877							0.09820390059576312
FERVFTCLL	9	Carbamidomethyl (C)	_FERVFTC(Carbamidomethyl (C))LL_	FERVFTC(1)LL		FERVFTC(66)LL		0	1	0		tr|A0A553ST03|A0A553ST03_NIACIDUF871domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04115PE=4SV=1	tr|A0A553ST03|A0A553ST03_NIACIDUF871domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04115PE=4SV=1	tr|A0A553ST03|A0A553ST03_NIACIDUF871domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04115PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	592.8132934570312	2	592.810259	1183.60597	2.0885	0.0012381	-2.5769	-0.0015276	-0.48841	-0.00028954	592.8087476547588	118.22	1.6288	118.22	117.84	119.47	0					102	34	4	0	0	0	0.27001	1	13530	13530		66.429	7.6473	1	7534500			10803	34443	8868	8878	11679	11679	383				0.021506451510049374
FESAKRLIL	9	Unmodified	_FESAKRLIL_					0	0	0		ENST00000497691.5_1_6:3273291-3410459:-|nuORF;nc|ENSG00000137266|A1A5C7-3|SLC22A23;nc|ENSG00000137266|A1A5C7-2|SLC22A23;ENSG00000137266|ENST00000406686|SLC22A23	ENST00000497691.5_1_6:3273291-3410459:-|nuORF	ENST00000497691.5_1_6:3273291-3410459:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.8282470703125	2	538.826766	1075.63898	-1.3695	-0.0007379	0.5105	0.00027507	-0.85896	-0.00046283	538.8270006767474	93.446	2.9138	90.938	90.614	93.527	-2.5072					151	59	5	0	0	0	0.1804	1	8241	8241		79.713	8.4169	1	3549600			10804	12814	8869	8879	11680	11680					0.10418595265377917
FESALRQL	8	Unmodified	_FESALRQL_					0	0	0			REV__ENSG00000149633|ENST00000279024|KIAA1755	REV__ENSG00000149633|ENST00000279024|KIAA1755	MULTI-MSMS	OvCa99_classI_Rep5	1	482.2670593261719	2	482.266542	962.51853	2.199	0.0010605	0.083688	4.036E-05	2.2827	0.0011009	482.2664292414749	82.364	0.97321	82.364	82.061	83.035	0					66	22	4	0	0	0	0.61436	1	8508	8508		60.972	0	1	2882400	+		10805	20173	8870	8880	11681	11681					0.03577187271753246
FESALRQL	8	Unmodified	_FESALRQL_					0	0	0			REV__ENSG00000149633|ENST00000279024|KIAA1755	REV__ENSG00000149633|ENST00000279024|KIAA1755	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	482.266542	962.51853	2.199	0.0010605	0.083688	4.036E-05	2.2827	0.0011009	482.2664292414749	82.364	0.97321	82.364	82.061	83.035	0	-0.13644	-0.00033648	NaN	60.972	66	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2882400	+		10806	20173	8870	8880							0.03577187271753246
FESALRQL	8	Unmodified	_FESALRQL_					0	0	0			REV__ENSG00000149633|ENST00000279024|KIAA1755	REV__ENSG00000149633|ENST00000279024|KIAA1755	MULTI-MATCH	OvCa9_classI_Rep2	2		2	482.266542	962.51853	-1.2507	-0.00060316	0.75989	0.00036647	-0.49078	-0.00023669	482.2668083503301	84.154	1.6208	82.608	82.223	83.844	-1.5462	0.10673	0.00031575	NaN	60.972	77	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152140	+		10807	20173	8870	8880							0.03577187271753246
FESALRQL	8	Unmodified	_FESALRQL_					0	0	0			REV__ENSG00000149633|ENST00000279024|KIAA1755	REV__ENSG00000149633|ENST00000279024|KIAA1755	MULTI-MATCH	OvCa9_classI_Rep3	3		2	482.266542	962.51853	-1.0692	-0.00051566	0.50641	0.00024423	-0.56282	-0.00027143	482.2666710457668	84.713	1.7272	82.452	82.067	83.794	-2.261	-0.049146	7.1257E-05	NaN	60.972	75	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	270010	+		10808	20173	8870	8880							0.03577187271753246
FESALRQL	8	Unmodified	_FESALRQL_					0	0	0			REV__ENSG00000149633|ENST00000279024|KIAA1755	REV__ENSG00000149633|ENST00000279024|KIAA1755	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	482.266542	962.51853	1.2332	0.00059475	-0.36366	-0.00017538	0.86958	0.00041937	482.2665219243379	85.226	1.6741	82.58	82.312	83.986	-2.6463	0.078865	-0.00076796	NaN	60.972	61	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186380	+		10809	20173	8870	8880							0.03577187271753246
FESGDNFKL	9	Unmodified	_FESGDNFKL_					0	0	0			REV__tr|A0A7D6ZGF2|A0A7D6ZGF2_9CLOTYokE-likePHdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22015PE=4SV=1	REV__tr|A0A7D6ZGF2|A0A7D6ZGF2_9CLOTYokE-likePHdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22015PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	528.7565307617188	2	528.753464	1055.49238	0.33285	0.00017599	3.4042	0.0018	3.7371	0.001976	528.7551192300973	161.84	1.166	161.84	161.31	162.48	0					65	22	4	0	0	0	0.11471	1	18984	18984		93.195	2.4188	1	691360	+		10810	31997	8871	8881	11682	11682					-0.03315126690381476
FESKGLTTIPQ	11	Unmodified	_FESKGLTTIPQ_					0	0	0			REV__nc|ENSG00000112655|Q13308-3|PTK7	REV__nc|ENSG00000112655|Q13308-3|PTK7	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.5455017089844	3	407.555561	1219.64485	0.96603	0.00039371	-3.4078	-0.0013889	-2.4418	-0.00099515	407.5543149301696	52.386	0.26468	52.386	52.214	52.478	0					8	5	2	0	0	0	0.02523	1	4085	4085		60.167	23.849	1	41023	+		10811	16081	8872	8882	11683	11683					0.04381648986372966
FESKVDAIL	9	Unmodified	_FESKVDAIL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	511.2833251953125	2	511.281857	1020.54916	2.2077	0.0011288	-0.53598	-0.00027404	1.6717	0.00085472	511.28164590034754	93.861	1.7379	93.861	93.59	95.328	0					96	40	5	0	0	0	0.084918	1	10205	10205		101.25	10.476	1	23883000			10812	6293	8873	8883	11684	11684					0.03970920866152028
FESPDEWL	8	Unmodified	_FESPDEWL_					0	0	0			REV__ENSG00000140505|ENST00000343932|CYP1A2	REV__ENSG00000140505|ENST00000343932|CYP1A2	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.7491455078125	2	511.726915	1021.43928	0.9977	0.00051055	1.1107	0.00056838	2.1084	0.0010789	511.72796452493293	154.13	0.19574	154.13	153.98	154.17	0					5	3	2	0	0	0	0.028476	1	18049	18049		40.573	13.525	1	10879	+		10813	19680	8874	8884	11685	11685					-0.07058504473036464
FESVVLTNL	9	Unmodified	_FESVVLTNL_					0	0	0		nc|ENSG00000173662|Q7RTX1-3|TAS1R1;ENSG00000173662|ENST00000333172|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	MULTI-MSMS	OvCa99_classI_Rep5	1	511.2837829589844	2	511.281857	1020.54916	1.5303	0.00078242	0.77957	0.00039858	2.3099	0.001181	511.28213801636235	98.399	0.75612	98.399	98.121	98.877	0					23	17	2	0	0	0	0.26076	1	10862	10862		67.494	0	1	847630			10814	7403	8875	8885	11686	11686					0.039709208661292905
FETIVKQQI	9	Unmodified	_FETIVKQQI_					0	0	0		ENSG00000157601|ENST00000398598|MX1;chr21:41446141-41449219|101|92.68|0.73|6.98|+|1|MX1,None|2;ENST00000486275.1_1_21:42817479-42821257:+|nuORF	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	OvCa99_classI_Rep5	1	553.31640625	2	553.316232	1104.61791	1.437	0.00079511	0.046442	2.5697E-05	1.4834	0.0008208	553.3162458166529	83.056	1.9411	83.056	82.609	84.55	0					95	45	5	0	0	0	0.0079861	3	8665	8610;8638;8665		215.39	85.708	1	18887000			10815	5904	8876	8886	11687;11688;11689	11689					0.06978585165848017
FETIVKQQI	9	Unmodified	_FETIVKQQI_					0	0	0		ENSG00000157601|ENST00000398598|MX1;chr21:41446141-41449219|101|92.68|0.73|6.98|+|1|MX1,None|2;ENST00000486275.1_1_21:42817479-42821257:+|nuORF	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MSMS	OvCa9_classI_Rep3	3	553.31689453125	2	553.316232	1104.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.73	1	82.469	81.969	82.969	-2.261								0	0	0	0.0014536	1	4933	4933		157.33	45.681	1				10816	5904	8876	8886	11690	11690					0.06978585165848017
FETIVKQQI	9	Unmodified	_FETIVKQQI_					0	0	0		ENSG00000157601|ENST00000398598|MX1;chr21:41446141-41449219|101|92.68|0.73|6.98|+|1|MX1,None|2;ENST00000486275.1_1_21:42817479-42821257:+|nuORF	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MSMS	OvCa9_classI_Rep3	3	553.3171997070312	2	553.316232	1104.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.78	1	82.519	82.019	83.019	-2.261								0	0	0	0.0014536	1	4939	4939		157.33	52.582	1				10817	5904	8876	8886	11691	11691					0.06978585165848017
FETIVKQQI	9	Unmodified	_FETIVKQQI_					0	0	0		ENSG00000157601|ENST00000398598|MX1;chr21:41446141-41449219|101|92.68|0.73|6.98|+|1|MX1,None|2;ENST00000486275.1_1_21:42817479-42821257:+|nuORF	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MSMS	OvCa9_classI_Rep3	3	553.3172607421875	2	553.316232	1104.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.837	1	82.576	82.076	83.076	-2.261								0	0	0	3.828E-09	1	4946	4946		190.52	80.398	1				10818	5904	8876	8886	11692	11692					0.06978585165848017
FETIVKQQI	9	Unmodified	_FETIVKQQI_					0	0	0		ENSG00000157601|ENST00000398598|MX1;chr21:41446141-41449219|101|92.68|0.73|6.98|+|1|MX1,None|2;ENST00000486275.1_1_21:42817479-42821257:+|nuORF	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.3170166015625	2	553.316232	1104.61791	1.4005	0.00077492	-1.7352	-0.00096012	-0.3347	-0.00018519	553.3152810292343	85.009	1.6212	82.363	82.072	83.693	-2.6463					58	32	4	0	0	0	0.014964	3	7133	7133;7144;7156		153.04	51.853	1	646190			10819	5904	8876	8886	11693;11694;11695	11693					0.06978585165848017
FETLLHQEL	9	Unmodified	_FETLLHQEL_					0	0	0		ENSG00000136830|ENST00000373312|NIBAN2;nc|ENSG00000136830|Q96TA1-2|NIBAN2	ENSG00000136830|ENST00000373312|NIBAN2	ENSG00000136830|ENST00000373312|NIBAN2	MULTI-MSMS	OvCa99_classI_Rep5	1	565.2999877929688	2	565.298039	1128.58152	3.1252	0.0017667	-0.40494	-0.00022891	2.7202	0.0015377	565.2975798109605	100.92	0.99655	100.92	100.44	101.44	0					39	23	3	0	0	0	0.0070314	1	11202	11202		185.55	84.297	1	2800300			10820	4521	8877	8887	11696	11696					0.02237708269126415
FETRKTLIL	9	Unmodified	_FETRKTLIL_					0	0	0		ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.P6706Tfs*18|1|0.25|ENSG00000154358|chr1:228370088-228370089|-/GA|frameshift_variant;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN	ENSG00000154358|ENST00000680850|OBSCN	ENSG00000154358|ENST00000680850|OBSCN	MULTI-SECPEP	OvCa9_classI_Rep3	3	560.804443359375	2	560.839874	1119.66519	-1.0485	-0.00058804	0.62655	0.00035139	-0.42195	-0.00023665	560.8403867295098	96.918	0.87695	95.089	94.775	95.652	-1.8286					32	16	3	0	0	0	0.027462	1	6458	6458		32.812	6.0163	1	60535			10821	5731	8878	8888	11697	11697					0.11014864436856442
FEVDSRVYL	9	Unmodified	_FEVDSRVYL_					0	0	0		nc|ENSG00000163882|P52434-5|POLR2H;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-2|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;ENST00000429568.1_1_3:184085914-184086079:+|nuORF;ENST00000476003.1_1_3:184084469-184086079:+|nuORF	nc|ENSG00000163882|P52434-5|POLR2H	nc|ENSG00000163882|P52434-5|POLR2H	MULTI-MSMS	OvCa99_classI_Rep5	1	564.2923583984375	2	564.290214	1126.56587	-1.8297	-0.0010325	-0.60681	-0.00034242	-2.4365	-0.0013749	564.2898062230407	103.86	0.98315	103.86	103.55	104.54	0					56	22	4	0	0	0	0.17606	1	11635	11635		80.455	0.74203	1	2063400			10822	6373	8879	8889	11698	11698					0.007654217520894235
FEVILTRI	8	Unmodified	_FEVILTRI_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;nc|ENSG00000273749|Q7L576-3|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1;CYFIP1|p.F1103S|1|0.17|ENSG00000273749|chr15:22873632-22873632|A/G|missense_variant;ENST00000524058.1_1_5:156810283-156816436:+|nuORF;ENST00000522884.5_1_5:156811334-156816436:+|nuORF;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	OvCa9_classI_Rep2	2	495.80230712890625	2	495.80276	989.590967	-0.36128	-0.00017913	0.13174	6.5317E-05	-0.22954	-0.00011381	495.8026794771934	115.34	1.3349	115.23	114.95	116.28	-0.11777					56	26	3	0	0	0	0.52468	2	10998	10993;10998		75.043	19.539	1	147130			10823	1221;9559	8880	8890	11699;11700	11700					0.09575521345323068
FEVILTRI	8	Unmodified	_FEVILTRI_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;nc|ENSG00000273749|Q7L576-3|CYFIP1;nc|ENSG00000273749|Q7L576-2|CYFIP1;CYFIP1|p.F1103S|1|0.17|ENSG00000273749|chr15:22873632-22873632|A/G|missense_variant;ENST00000524058.1_1_5:156810283-156816436:+|nuORF;ENST00000522884.5_1_5:156811334-156816436:+|nuORF;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	OvCa9_classI_Rep3	3	495.80169677734375	2	495.80276	989.590967	-0.76597	-0.00037977	0.65179	0.00032316	-0.11417	-5.6607E-05	495.8028976709344	116.21	1.7313	115.17	114.9	116.63	-1.0414					66	34	3	0	0	0	0.52468	1	8671	8671		75.043	6.2565	1	142870			10824	1221;9559	8880	8890	11701	11701					0.09575521345323068
FEVKDLLSL	9	Unmodified	_FEVKDLLSL_					0	0	0		ENSG00000113328|ENST00000340828|CCNG1	ENSG00000113328|ENST00000340828|CCNG1	ENSG00000113328|ENST00000340828|CCNG1	MULTI-MSMS	OvCa99_classI_Rep5	1	532.3067626953125	2	532.305332	1062.59611	0.61138	0.00032544	1.7614	0.00093762	2.3728	0.0012631	532.306122755643	141.16	0.90421	141.16	140.83	141.74	0					48	17	4	0	0	0	0.046778	2	16500	16476;16500		120.87	14.453	1	471420			10825	2966	8881	8891	11702;11703	11703					0.0673178041729443
FEVPLDISL	9	Unmodified	_FEVPLDISL_					0	0	0		ENSG00000186088|ENST00000257626|GSAP;ENST00000334003.11_1_7:76959552-77026708:-|nuORF;nc|ENSG00000186088|A4D1B5-3|GSAP;nc|ENSG00000186088|A4D1B5-2|GSAP	ENSG00000186088|ENST00000257626|GSAP	ENSG00000186088|ENST00000257626|GSAP	MULTI-MSMS	OvCa99_classI_Rep5	1	516.786376953125	2	516.784233	1031.55391	0.21811	0.00011272	-0.25417	-0.00013135	-0.036065	-1.8638E-05	516.7839453981849	161.29	0.80997	161.29	161.01	161.82	0					29	15	3	0	0	0	0.50149	1	18903	18903		42.396	4.5846	1	149610			10826	8312	8882	8892	11704	11704					0.03939805008917574
FEVTGLFFY	9	Unmodified	_FEVTGLFFY_					0	0	0			REV__ENSG00000196099|ENST00000309154|OR6M1	REV__ENSG00000196099|ENST00000309154|OR6M1	MULTI-MSMS	OvCa9_classI_Rep3	3	561.7793579101562	2	561.778951	1121.54335	-1.3592	-0.00076357	0.52615	0.00029558	-0.83305	-0.00046799	561.7792444049404	136.22	0.83698	135.12	134.85	135.69	-1.1076					32	16	3	0	0	0	0.65476	1	11046	11046		25.45	0.93098	1	51102	+		10827	22781	8883	8893	11705	11705					-0.012561776455186191
FEVYLKPY	8	Unmodified	_FEVYLKPY_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35062192-35072350:-|nuORF;VCP|p.I309Sfs*28|1|0.03|ENSG00000165280|chr9:35062236-35062237|-/GGCTGAAGTAGGAGAATTGC|frameshift_variant;VCP|p.A310Lfs*47|1|0.04|ENSG00000165280|chr9:35062234-35062235|-/TACTCAG|frameshift_variant;VCP|p.P648Lfs*31|1|0.32|ENSG00000165280|chr9:35059554-35059554|G/-|frameshift_variant	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7968139648438	2	529.781493	1057.54843	-1.9394	-0.0010275	0.32049	0.00016979	-1.6189	-0.00085768	529.781803491662	104.37	0.3872	104.37	104.11	104.49	0					16	8	2	0	0	0	0.028476	1	11690	11690		55.504	0	1	547420			10828	6545	8884	8894	11706	11706					0.021961262170862028
FEWADLSF	8	Unmodified	_FEWADLSF_					0	0	0		ENSG00000109674|ENST00000264596|NEIL3;chr4:177360677-177362289|415|15.68|0.97|4.01|+|0|NEIL3,NEIL3|1	ENSG00000109674|ENST00000264596|NEIL3	ENSG00000109674|ENST00000264596|NEIL3	MULTI-MSMS	OvCa9_classI_Rep3	3	507.73211669921875	2	507.732	1013.44945	0.87453	0.00044403	-1.6419	-0.00083367	-0.76742	-0.00038964	507.73107539480856	64.609	1.4672	61.616	61.09	62.557	-2.9933					46	28	2	0	0	0	0.65582	1	2523	2523		52.299	6.3472	1	54457			10829	2724	8885	8895	11707	11707					-0.05673896747805429
FEWENKVTV	9	Unmodified	_FEWENKVTV_					0	0	0		ENSG00000129083|ENST00000439561|COPB1;ENST00000526527.1_1_11:14481741-14482839:-|nuORF	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	OvCa99_classI_Rep5	1	576.2918090820312	2	576.290214	1150.56587	1.1486	0.00066193	1.1572	0.00066686	2.3058	0.0013288	576.290769151649	98.221	0.77112	98.221	97.867	98.638	0					38	15	3	0	0	0	0.31122	1	10817	10817		61.691	2.9093	1	3144000			10830	3919	8886	8896	11708	11708					-0.0033857824791994062
FEWTTTNSAVL	11	Unmodified	_FEWTTTNSAVL_					0	0	0			REV__ENSG00000160446|ENST00000372663|ZDHHC12	REV__ENSG00000160446|ENST00000372663|ZDHHC12	MULTI-MSMS	OvCa99_classI_Rep5	1	634.8126220703125	2	634.81151	1267.60847	1.3518	0.00085811	0.83864	0.00053238	2.1904	0.0013905	634.8120104546088	142.69	0.54454	142.69	142.39	142.93	0					25	10	3	0	0	0	0.4646	1	16671	16671		56.434	3.0823	1	199610	+		10831	20660	8887	8897	11709	11709					-0.014632279103580004
FEYGTPETL	9	Unmodified	_FEYGTPETL_					0	0	0		XPO1-USP34|2|fusion;USP34|p.K3306Nfs*3|1|0.18|ENSG00000115464|chr2:61189025-61189025|T/-|frameshift_variant;nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34	XPO1-USP34|2|fusion	XPO1-USP34|2|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.287841796875	2	528.747847	1055.48114	-0.34017	-0.00017987	0.65267	0.0003451	0.31249	0.00016523	528.7480082723213	44.476	2.1567	44.476	44.169	46.326	0					72	48	2	0	0	0	0.027462	1	3242	3242		55.504	7.5886	1	208700			10832	36309	8888	8898	11710	11710					-0.044379487844935284
FEYTANIIGW	10	Unmodified	_FEYTANIIGW_					0	0	0			REV__ENSG00000141437|ENST00000269205|SLC25A52	REV__ENSG00000141437|ENST00000269205|SLC25A52	MULTI-MSMS	OvCa99_classI_Rep5	1	607.802001953125	2	607.298039	1212.58152	0.68735	0.00041742	0.20556	0.00012483	0.8929	0.00054226	607.2982237370969	161.42	1.2636	161.42	160.71	161.97	0					54	24	3	0	0	0	0.52321	1	18927	18927		51.335	3.6781	1	60287	+		10833	18610	8889	8899	11711	11711					-0.016262917308722535
FFAAIILFL	9	Unmodified	_FFAAIILFL_					0	0	0		tr|A0A7D6ZHM8|A0A7D6ZHM8_9CLOTUPF0182proteinHZF06_00075OS=ClostridiumintestinaleOX=36845GN=HZF06_00075PE=3SV=1	tr|A0A7D6ZHM8|A0A7D6ZHM8_9CLOTUPF0182proteinHZF06_00075OS=ClostridiumintestinaleOX=36845GN=HZF06_00075PE=3SV=1	tr|A0A7D6ZHM8|A0A7D6ZHM8_9CLOTUPF0182proteinHZF06_00075OS=ClostridiumintestinaleOX=36845GN=HZF06_00075PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	527.8186645507812	2	527.820421	1053.62629	1.8362	0.00096918	-3.2667	-0.0017242	-1.4305	-0.00075506	527.818261010315	137.7	0.90511	137.7	137.3	138.21	0					30	16	3	0	0	0	0.32242	1	16064	16064		60.404	2.5924	1	105800			10834	35582	8890	8900	11712	11712					0.10162183873126196
FFAAVAIVLG	10	Unmodified	_FFAAVAIVLG_					0	0	0		ENSG00000087111|ENST00000308360|PIGS;ENST00000577594.5_1_17:26890803-26898514:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS;ENST00000583631.1_1_17:26890919-26898285:-|nuORF;PIGS-SPAG5|1|fusion	ENSG00000087111|ENST00000308360|PIGS;PIGS-SPAG5|1|fusion	PIGS-SPAG5|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	504.2987060546875	2	504.299853	1006.58515	-1.2162	-0.00061332	-3.1624	-0.0015948	-4.3786	-0.0022081	504.29821756982153	103.35	3.6196	102.66	102.28	105.9	-0.68459					195	72	4	0	0	0	0.49566	2	9557	9557;9571		54.765	8.8127	1	812500			10835	15499;1763	8891	8901	11713;11714	11713					0.0821242283365109
FFAAVAIVLG	10	Unmodified	_FFAAVAIVLG_					0	0	0		ENSG00000087111|ENST00000308360|PIGS;ENST00000577594.5_1_17:26890803-26898514:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS;ENST00000583631.1_1_17:26890919-26898285:-|nuORF;PIGS-SPAG5|1|fusion	ENSG00000087111|ENST00000308360|PIGS;PIGS-SPAG5|1|fusion	PIGS-SPAG5|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	504.2982482910156	2	504.299853	1006.58515	-0.082287	-4.1497E-05	-4.349	-0.0021932	-4.4313	-0.0022347	504.2976378271559	104.41	3.9037	102.97	102.5	106.4	-1.4347					184	75	5	0	0	0	0.4178	2	7298	7298;7310		65.897	8.0862	1	927760			10836	15499;1763	8891	8901	11715;11716	11715					0.0821242283365109
FFAAVAIVLG	10	Unmodified	_FFAAVAIVLG_					0	0	0		ENSG00000087111|ENST00000308360|PIGS;ENST00000577594.5_1_17:26890803-26898514:-|nuORF;nc|ENSG00000087111|Q96S52-2|PIGS;ENST00000583631.1_1_17:26890919-26898285:-|nuORF;PIGS-SPAG5|1|fusion	ENSG00000087111|ENST00000308360|PIGS;PIGS-SPAG5|1|fusion	PIGS-SPAG5|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.2967529296875	2	504.299853	1006.58515	-0.73291	-0.00036961	-3.7994	-0.0019161	-4.5323	-0.0022857	504.2978909366257	105.14	3.2976	103.13	102.58	105.88	-2.0161					166	64	4	0	0	0	0.4178	3	9568	9556;9568;9593		65.897	15.873	1	823080			10837	15499;1763	8891	8901	11717;11718;11719	11718					0.0821242283365109
FFADKPNDQ	9	Unmodified	_FFADKPNDQ_					0	0	0		tr|A0A553SPM1|A0A553SPM1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_26575PE=4SV=1	tr|A0A553SPM1|A0A553SPM1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_26575PE=4SV=1	tr|A0A553SPM1|A0A553SPM1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_26575PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.3455200195312	2	541.251089	1080.48762	-0.16973	-9.1865E-05	-0.18769	-0.00010159	-0.35742	-0.00019345	541.2507976405914	82.223	1.0922	80.574	80.179	81.271	-1.6485					50	20	3	0	0	0	0.027462	1	6967	6967		56.721	10.749	1	111550			10838	34062	8892	8902	11720	11720					-0.04940010833138331
FFAICIVHL	9	Unmodified	_FFAICIVHL_					0	0	0		ENST00000585799.5_1_19:11132109-11172489:+|nuORF	ENST00000585799.5_1_19:11132109-11172489:+|nuORF	ENST00000585799.5_1_19:11132109-11172489:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.8256225585938	2	531.793881	1061.57321	2.1932	0.0011663	1.6296	0.00086661	3.8228	0.0020329	531.7946541792435	137.13	0.62511	137.13	136.87	137.5	0					21	12	2	0	0	0	0.027462	1	15969	15969		29.842	6.7991	1	110810			10839	14041	8893	8903	11721	11721					0.044884828188060055
FFAPIKLF	8	Unmodified	_FFAPIKLF_					0	0	0			REV__ENST00000462445.1_1_10:70863984-70864131:+|nuORF	REV__ENST00000462445.1_1_10:70863984-70864131:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	491.79315185546875	2	491.791664	981.568775	1.1056	0.00054371	2.5196	0.0012391	3.6252	0.0017828	491.7925468635316	34.599	0.90321	31.811	31.548	32.451	-2.7881					28	17	2	0	0	0	0.72922	1	1037	1037		37.028	8.7742	1	76665	+		10840	26113	8894	8904	11722	11722					0.07725341667560315
FFASGEPIPV	10	Unmodified	_FFASGEPIPV_					0	0	0			REV__nc|ENSG00000102001|O60840-5|CACNA1F	REV__nc|ENSG00000102001|O60840-5|CACNA1F	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.2909545898438	2	532.276575	1062.5386	-1.2651	-0.00067341	-2.5828	-0.0013748	-3.8479	-0.0020482	532.2751286270691	70.046	0.29114	70.046	69.798	70.089	0					10	6	2	0	0	0	0.026697	1	6672	6672		55.504	23.549	1	320000	+		10841	17532	8895	8905	11723	11723					0.009829382117231944
FFDIVNVYTL	10	Unmodified	_FFDIVNVYTL_					0	0	0		tr|A0A553SI33|A0A553SI33_NIACICytochromedubiquinoloxidasesubunitIIOS=NialliacirculansOX=1397GN=cydBPE=3SV=1	tr|A0A553SI33|A0A553SI33_NIACICytochromedubiquinoloxidasesubunitIIOS=NialliacirculansOX=1397GN=cydBPE=3SV=1	tr|A0A553SI33|A0A553SI33_NIACICytochromedubiquinoloxidasesubunitIIOS=NialliacirculansOX=1397GN=cydBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	615.82861328125	2	615.823889	1229.63323	0.98553	0.00060692	4.4242	0.0027246	5.4098	0.0033315	615.8265545245539	80.841	2.0776	78.519	78.131	80.209	-2.3226					126	40	5	0	0	0	0.15262	2	4447	4447;4470		101.6	16.44	1	2601000			10842	33338	8896	8906	11724;11725	11724					0.02759451963038373
FFEFINLVCA	10	Unmodified	_FFEFINLVCA_					0	0	0		tr|A0A7D6VQC2|A0A7D6VQC2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02460PE=4SV=1	tr|A0A7D6VQC2|A0A7D6VQC2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02460PE=4SV=1	tr|A0A7D6VQC2|A0A7D6VQC2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02460PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	601.798828125	2	601.79936	1201.58417	-0.74104	-0.00044596	-3.5819	-0.0021556	-4.323	-0.0026016	601.7971882020773	65.924	1.348	65.924	65.271	66.619	0					71	33	4	0	0	0	0.31157	1	6067	6067		79.451	2.6769	1	3866200			10843	34838	8897	8907	11726	11726					-0.008561595975606906
FFFFFFLVF	9	Unmodified	_FFFFFFLVF_					0	0	0		AluY_dup35562|chr6:33325560-33325873:+|2.071996534774159|0.0033360021601532|9.28|373.0|18|3|anti-sense	AluY_dup35562|chr6:33325560-33325873:+|2.071996534774159|0.0033360021601532|9.28|373.0|18|3|anti-sense	AluY_dup35562|chr6:33325560-33325873:+|2.071996534774159|0.0033360021601532|9.28|373.0|18|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	421.2377014160156	3	420.887923	1259.64194	1.2384	0.00052125	1.38	0.00058083	2.6184	0.0011021	420.888289562158	65.481	0.85653	62.785	62.314	63.17	-2.6958					37	16	3	0	0	0	0.027462	1	5015	5015		37.159	6.5902	1	38501			10844	81	8898	8908	11727	11727					0.02250470390163173
FFFFFLFPRRR	11	Unmodified	_FFFFFLFPRRR_					0	0	0		ENST00000222747.7_1_7:120497939-120498116:-|nuORF	ENST00000222747.7_1_7:120497939-120498116:-|nuORF	ENST00000222747.7_1_7:120497939-120498116:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.7771606445312	3	527.294346	1578.86121	-1.4718	-0.00077605	-0.25604	-0.00013501	-1.7278	-0.00091105	527.2934348043641	52.682	0.24614	49.868	49.739	49.985	-2.8139					7	4	2	0	0	0	0.02653	1	3522	3522		1.4188	0	1	5666			10845	9700	8899	8909	11728	11728					0.09493294401386265
FFFLVNWNE	9	Unmodified	_FFFLVNWNE_					0	0	0		ENSG00000139144|ENST00000538779|PIK3C2G	ENSG00000139144|ENST00000538779|PIK3C2G	ENSG00000139144|ENST00000538779|PIK3C2G	MULTI-MSMS	OvCa9_classI_Rep3	3	608.296630859375	2	608.295299	1214.57605	3.6539	0.0022227	-1.3406	-0.00081548	2.3133	0.0014072	608.2942855637167	59.026	3.3501	55.911	55.036	58.386	-3.1147					203	93	3	0	0	0	0.58665	1	1901	1901		33.516	1.9858	1	283460			10846	4745	8900	8910	11729	11729					-0.02265970522648786
FFFMLLTL	8	Unmodified	_FFFMLLTL_					0	0	0		ENSG00000011083|ENST00000230671|SLC6A7;ENSG00000268104|ENST00000598581|SLC6A14	ENSG00000011083|ENST00000230671|SLC6A7	ENSG00000011083|ENST00000230671|SLC6A7	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.2866821289062	2	516.285357	1030.55616	-0.34066	-0.00017588	-0.83882	-0.00043307	-1.1795	-0.00060895	516.2849649091515	58.068	1.5558	54.723	54.444	56	-3.3449					55	30	2	0	0	0	0.65582	1	3806	3806		52.299	4.3396	1	1003400			10847	955	8901	8911	11730	11730					0.04210562213029334
FFFMSRRRRPL	11	Unmodified	_FFFMSRRRRPL_					0	0	0			REV__ENST00000370114.7_1_1:101360988-101361132:-|nuORF	REV__ENST00000370114.7_1_1:101360988-101361132:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	504.9509582519531	3	504.950474	1511.82959	-1.0352	-0.00052273	1.9993	0.0010095	0.96409	0.00048682	504.9515351464522	76.262	2.1432	74.408	74.044	76.187	-1.854					125	40	5	0	0	0	0.71582	1	6299	6299		24.232	7.0651	1	939050	+		10848	24956	8902	8912	11731	11731					0.09414978375821192
FFGCISRSEAV	11	Unmodified	_FFGCISRSEAV_					0	0	0		ENSG00000101213|ENST00000542869|PTK6	ENSG00000101213|ENST00000542869|PTK6	ENSG00000101213|ENST00000542869|PTK6	MULTI-MSMS	OvCa9_classI_Rep2	2	608.2970581054688	2	608.294973	1214.57539	-0.93087	-0.00056624	3.8832	0.0023622	2.9524	0.0017959	608.2971907887074	58.323	2.9269	55.538	54.93	57.857	-2.7848					145	56	4	0	0	0	0.68021	1	4185	4185		36.447	11.928	1	664310			10849	2152	8903	8913	11732	11732					-0.023311332340199442
FFGEFHYRWIW	11	Unmodified	_FFGEFHYRWIW_					0	0	0			REV__nc|ENSG00000105438|P24390-2|KDELR1	REV__nc|ENSG00000105438|P24390-2|KDELR1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.9241943359375	3	529.922578	1586.7459	0.013367	7.0833E-06	2.7297	0.0014465	2.743	0.0014536	529.9240751337268	31.217	2.4049	31.217	30.881	33.285	0					115	48	4	0	0	0	0.72511	1	1268	1268		14.086	3.4992	1	327950	+		10850	17727	8904	8914	11733	11733					-0.02399854520263034
FFGGQNVI	8	Unmodified	_FFGGQNVI_					0	0	0		tr|A0A7D6W0Y3|A0A7D6W0Y3_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=celBPE=4SV=1	tr|A0A7D6W0Y3|A0A7D6W0Y3_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=celBPE=4SV=1	tr|A0A7D6W0Y3|A0A7D6W0Y3_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=celBPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	441.23248291015625	2	441.229428	880.444303	3.3378	0.0014727	2.8734	0.0012678	6.2112	0.0027406	441.23057122271166	77.077	0.78885	77.077	76.841	77.629	0					38	18	3	0	0	0	0.60486	1	7748	7748		62.978	2.6845	1	3948200			10851	35392	8905	8915	11734	11734					-0.0007015581975338137
FFGKKFVLT	9	Unmodified	_FFGKKFVLT_					0	0	0		tr|A0A553SGZ9|A0A553SGZ9_NIACIAI-2EfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_11875PE=3SV=1	tr|A0A553SGZ9|A0A553SGZ9_NIACIAI-2EfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_11875PE=3SV=1	tr|A0A553SGZ9|A0A553SGZ9_NIACIAI-2EfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_11875PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	543.8192749023438	2	543.820953	1085.62735	-1.415	-0.00076952	-3.1187	-0.001696	-4.5337	-0.0024655	543.8193248422483	102.3	1.5803	101.62	101.24	102.82	-0.68459					104	31	5	0	0	0	0.34496	1	9436	9436		57.811	6.4758	1	1306500			10852	33214	8906	8916	11735	11735					0.08796398242020587
FFGLCLLSLL	10	Unmodified	_FFGLCLLSLL_					0	0	0		ENSG00000067182|ENST00000162749|TNFRSF1A;ENST00000537842.5_1_12:6439038-6442545:-|nuORF;ENST00000536717.5_1_12:6438480-6440154:-|nuORF;nc|ENSG00000067182|P19438-2|TNFRSF1A	ENSG00000067182|ENST00000162749|TNFRSF1A	ENSG00000067182|ENST00000162749|TNFRSF1A	MULTI-MSMS	OvCa9_classI_Rep2	2	563.3208618164062	2	563.322471	1124.63039	-3.8795	-0.0021854	-2.6837	-0.0015118	-6.5631	-0.0036972	563.3208339373161	155.36	0.8447	155.13	154.8	155.64	-0.22697					43	26	2	0	0	0	0.69986	1	15822	15822		30.504	0.18592	1	63890			10853	1369	8907	8917	11736	11736					0.07305905304565385
FFGQFMIQI	9	Unmodified	_FFGQFMIQI_					0	0	0		tr|A0A7D6W207|A0A7D6W207_9CLOTVWAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04665PE=4SV=1	tr|A0A7D6W207|A0A7D6W207_9CLOTVWAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04665PE=4SV=1	tr|A0A7D6W207|A0A7D6W207_9CLOTVWAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04665PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	565.788818359375	2	565.788795	1129.56304	-0.7707	-0.00043605	-0.69497	-0.00039321	-1.4657	-0.00082926	565.7883795547209	95.127	2.1472	93.231	92.561	94.709	-1.8956					107	42	3	0	0	0	0.38529	1	6187	6187		53.351	0.26249	1	776060			10854	35419	8908	8918	11737	11737					0.0034387509358566604
FFGTSLSKFPL	11	Unmodified	_FFGTSLSKFPL_					0	0	0			REV__tr|A0A553SSZ4|A0A553SSZ4_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_04065PE=4SV=1	REV__tr|A0A553SSZ4|A0A553SSZ4_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_04065PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	622.3359985351562	2	622.339707	1242.66486	-4.541	-0.002826	-0.52977	-0.00032969	-5.0707	-0.0031557	622.3392173202388	154.08	1.2081	153.07	152.74	153.95	-1.0076					67	24	4	0	0	0	0.71498	1	13230	13230		24.519	2.5593	1	199770	+		10855	30897	8909	8919	11738	11738					0.053234447170098065
FFHANTILKW	10	Unmodified	_FFHANTILKW_					0	0	0			REV__tr|A0A553SKS9|A0A553SKS9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_19205PE=4SV=1	REV__tr|A0A553SKS9|A0A553SKS9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_19205PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	638.8452758789062	2	638.84549	1275.67643	0.20241	0.00012931	-3.3684	-0.0021519	-3.166	-0.0020226	638.8432805589141	102.59	1.7814	100.39	99.884	101.67	-2.1994					95	33	5	0	0	0	0.5675	1	9276	9276		45.972	3.5761	1	760420	+		10856	30149	8910	8920	11739	11739					0.04961686530987208
FFHCKLVL	8	Unmodified	_FFHCKLVL_					0	0	0		ENSG00000087301|ENST00000281741|TXNDC16;TXNDC16|p.H346Rfs*4|1|0.18|ENSG00000087301|chr14:52488433-52488434|AT/-|frameshift_variant;TXNDC16|p.D374Efs*23|1|0.15|ENSG00000087301|chr14:52482952-52482952|A/-|frameshift_variant	ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.80035400390625	2	503.780773	1005.54699	0.72481	0.00036514	2.028	0.0010217	2.7528	0.0013868	503.7814125357891	97.045	0.84767	94.62	94.271	95.119	-2.4256					23	14	2	0	0	0	0.028476	1	8628	8628		50.025	24.45	1	39831			10857	1771	8911	8921	11740	11740					0.044442136473321625
FFHCKLVL	8	Unmodified	_FFHCKLVL_					0	0	0		ENSG00000087301|ENST00000281741|TXNDC16;TXNDC16|p.H346Rfs*4|1|0.18|ENSG00000087301|chr14:52488433-52488434|AT/-|frameshift_variant;TXNDC16|p.D374Efs*23|1|0.15|ENSG00000087301|chr14:52482952-52482952|A/-|frameshift_variant	ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	MULTI-MATCH	OvCa99_classI_Rep5	1		2	503.780773	1005.54699	2.5193	0.0012692	4.4672	0.0022505	6.9865	0.0035197	503.7827792392723	94.514	0.38341	94.514	94.306	94.69	0	-0.080361	0.0016725	NaN	50.025	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246480			10858	1771	8911	8921							0.044442136473321625
FFHCKLVL	8	Unmodified	_FFHCKLVL_					0	0	0		ENSG00000087301|ENST00000281741|TXNDC16;TXNDC16|p.H346Rfs*4|1|0.18|ENSG00000087301|chr14:52488433-52488434|AT/-|frameshift_variant;TXNDC16|p.D374Efs*23|1|0.15|ENSG00000087301|chr14:52482952-52482952|A/-|frameshift_variant	ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	MULTI-MATCH	OvCa9_classI_Rep2	2		2	503.780773	1005.54699	-0.5679	-0.0002861	3.1815	0.0016028	2.6136	0.0013167	503.7818730282592	95.645	0.79432	94.617	94.219	95.013	-1.0281	0.022514	0.00037711	NaN	50.025	27	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23593			10859	1771	8911	8921							0.044442136473321625
FFHCKLVL	8	Unmodified	_FFHCKLVL_					0	0	0		ENSG00000087301|ENST00000281741|TXNDC16;TXNDC16|p.H346Rfs*4|1|0.18|ENSG00000087301|chr14:52488433-52488434|AT/-|frameshift_variant;TXNDC16|p.D374Efs*23|1|0.15|ENSG00000087301|chr14:52482952-52482952|A/-|frameshift_variant	ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	MULTI-MATCH	OvCa9_classI_Rep3	3		2	503.780773	1005.54699	-1.2799	-0.00064477	3.3616	0.0016935	2.0817	0.0010487	503.78252743663865	96.456	0.86914	94.627	94.271	95.14	-1.8286	0.03269	0.00055856	NaN	50.025	39	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33615			10860	1771	8911	8921							0.044442136473321625
FFHYPLLP	8	Unmodified	_FFHYPLLP_					0	0	0			REV__ENST00000526097.1_1_8:11418120-11421614:+|nuORF	REV__ENST00000526097.1_1_8:11418120-11421614:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	516.3275756835938	2	517.278921	1032.54329	2.0542	0.0010626	3.1414	0.001625	5.1956	0.0026876	517.2801698400033	111.66	0.49492	110.56	110.35	110.84	-1.1038					17	9	2	0	0	0	0.028476	1	8096	8096		54.895	28.202	1	23966	+		10861	27126	8912	8922	11741	11741					0.028318671451415867
FFIISNPPSL	10	Unmodified	_FFIISNPPSL_					0	0	0			REV__ENST00000360620.7_1_7:100400564-100401029:-|nuORF	REV__ENST00000360620.7_1_7:100400564-100401029:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	567.810302734375	2	567.813325	1133.6121	0.016962	9.6314E-06	-3.7397	-0.0021235	-3.7228	-0.0021138	567.811208678959	114.23	1.3057	113.18	112.79	114.09	-1.055					67	25	3	0	0	0	0.64697	1	8456	8456		36.447	0.82846	1	291700	+		10862	24835	8913	8923	11742	11742					0.050634866541713563
FFILAACLVL	10	Unmodified	_FFILAACLVL_					0	0	0			REV__ENSG00000143786|ENST00000272133|CNIH3	REV__ENSG00000143786|ENST00000272133|CNIH3	MULTI-MSMS	OvCa9_classI_Rep2	2	555.3253784179688	2	555.325014	1108.63547	-0.46526	-0.00025837	-0.077268	-4.2909E-05	-0.54253	-0.00030128	555.3248709586028	84.402	1.9194	82.855	82.072	83.992	-1.5462					87	37	4	0	0	0	0.5794	1	7272	7272		44.531	2.0566	1	491770	+		10863	19868	8914	8924	11743	11743					0.08550209167128742
FFILFLTM	8	Unmodified	_FFILFLTM_					0	0	0		ENSG00000279051|ENST00000302622|OR6Q1	ENSG00000279051|ENST00000302622|OR6Q1	ENSG00000279051|ENST00000302622|OR6Q1	MULTI-MSMS	OvCa9_classI_Rep2	2	516.2853393554688	2	516.285357	1030.55616	-0.48899	-0.00025246	-0.20776	-0.00010726	-0.69675	-0.00035972	516.285153684191	57.372	1.6977	54.58	54.03	55.728	-2.792					82	33	3	0	0	0	0.69415	1	4102	4102		44.531	0	1	519060			10864	9596	8915	8925	11744	11744					0.04210562213006597
FFILLISAGIT	11	Unmodified	_FFILLISAGIT_					0	0	0			REV__nc|ENSG00000183853|Q96J84-3|KIRREL1	REV__nc|ENSG00000183853|Q96J84-3|KIRREL1	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8558349609375	2	597.860275	1193.706	-3.1765	-0.0018991	-3.3266	-0.0019889	-6.5032	-0.003888	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.72499	1	15074	15074		15.642	0.77694	1	436470	+		10865	22390	8916	8926	11745	11745					0.11689205756488263
FFILLMLWGE	10	Unmodified	_FFILLMLWGE_					0	0	0		ENSG00000113211|ENST00000231136|PCDHB6	ENSG00000113211|ENST00000231136|PCDHB6	ENSG00000113211|ENST00000231136|PCDHB6	MULTI-SECPEP	OvCa99_classI_Rep5	1	635.3126220703125	2	634.841028	1267.6675	1.6928	0.0010746	-2.652	-0.0016836	-0.95925	-0.00060897	635.3406350356487	115.21	1.0705	115.21	114.51	115.58	0					27	22	2	0	0	0	0.026639	1	13192	13192		44.117	12.587	1	263510			10866	2954	8917	8927	11746	11746					0.044375768502959545
FFINKYQFPL	10	Unmodified	_FFINKYQFPL_					0	0	0		tr|A0A7D6ZUM4|A0A7D6ZUM4_9CLOTDUF2085domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12555PE=4SV=1	tr|A0A7D6ZUM4|A0A7D6ZUM4_9CLOTDUF2085domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12555PE=4SV=1	tr|A0A7D6ZUM4|A0A7D6ZUM4_9CLOTDUF2085domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12555PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	439.57281494140625	3	439.572775	1315.69649	-0.35444	-0.0001558	2.5424	0.0011176	2.188	0.00096176	439.57386515080725	63.418	1.7895	60.673	60.161	61.95	-2.7444					115	33	5	0	0	0	0.62299	2	4788	4788;4799		39.253	1.3648	1	527640			10867	35777	8918	8928	11747;11748	11747					0.05127437470946461
FFISLIPE	8	Unmodified	_FFISLIPE_					0	0	0		ENSG00000113211|ENST00000231136|PCDHB6	ENSG00000113211|ENST00000231136|PCDHB6	ENSG00000113211|ENST00000231136|PCDHB6	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.2528381347656	2	483.270761	964.52697	1.8319	0.00088528	-0.37557	-0.0001815	1.4563	0.00070378	483.2704113839687	107.06	2.815	107.06	105	107.82	0					111	64	3	0	0	0	0.028476	1	12024	12024		37.028	0	1	986470			10868	2954	8919	8929	11749	11749					0.043287411883852656
FFKKGKIYF	9	Unmodified	_FFKKGKIYF_					0	0	0			REV__ST8SIA3|p.N93Kfs*19|1|0.05|ENSG00000177511|chr18:57354500-57354501|-/GT|frameshift_variant	REV__ST8SIA3|p.N93Kfs*19|1|0.05|ENSG00000177511|chr18:57354500-57354501|-/GT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3435668945312	2	589.342052	1176.66955	-2.1868	-0.0012888	3.6745	0.0021655	1.4876	0.00087673	589.3441619466173	148.26	4.549	146.82	145.53	150.08	-1.435					304	95	6	0	0	0	0.59983	1	14505	14505		31.955	3.8734	1	385010	+		10869	29459	8920	8930	11750	11750					0.08828373650408139
FFKKPYPFVL	10	Unmodified	_FFKKPYPFVL_					0	0	0		ENST00000443339.5_1_3:9475802-9506425:+|nuORF;SETD5|p.G1032Efs*16|1|0.77|ENSG00000168137|chr3:9470828-9470829|-/A|frameshift_variant;SETD5|p.R1157Ifs*12|1|0.41|ENSG00000168137|chr3:9473509-9473521|AGACCTCAAGAGA/-|frameshift_variant;nc|ENSG00000168137|Q9C0A6-2|SETD5;nc|ENSG00000168137|Q9C0A6-3|SETD5;ENSG00000168137|ENST00000402198|SETD5	ENST00000443339.5_1_3:9475802-9506425:+|nuORF	ENST00000443339.5_1_3:9475802-9506425:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	429.2518005371094	3	429.249632	1284.72707	-0.16477	-7.0726E-05	2.0682	0.00088776	1.9034	0.00081704	429.25055952438805	92.339	1.6895	89.796	89.415	91.104	-2.5425					123	33	5	0	0	0	0.70152	1	8041	8041		30.318	0.76697	1	2879600			10870	6876	8921	8931	11751	11751					0.09609215855971343
FFKPHWDEKF	10	Unmodified	_FFKPHWDEKF_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	OvCa99_classI_Rep5	1	460.8972473144531	3	460.896029	1379.66626	2.3511	0.0010836	-0.36812	-0.00016967	1.983	0.00091394	460.89575038962624	84.714	1.0711	84.714	84.431	85.502	0					73	25	5	0	0	0	0.05917	1	8857	8857		125.68	46.612	1	3322700			10871	5448	8922	8932	11752	11752					-0.008389211942812835
FFLFLVLLII	10	Unmodified	_FFLFLVLLII_					0	0	0		tr|A0A553SFS7|A0A553SFS7_NIACIRegulatoryproteinMsrROS=NialliacirculansOX=1397GN=CEQ21_09425PE=3SV=1	tr|A0A553SFS7|A0A553SFS7_NIACIRegulatoryproteinMsrROS=NialliacirculansOX=1397GN=CEQ21_09425PE=3SV=1	tr|A0A553SFS7|A0A553SFS7_NIACIRegulatoryproteinMsrROS=NialliacirculansOX=1397GN=CEQ21_09425PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	413.5848083496094	3	413.270145	1236.7886	1.1015	0.00045523	-0.91223	-0.000377	0.18929	7.8226E-05	413.26874407104793	63.463	0.47708	63.463	63.337	63.814	0					14	11	2	0	0	0	0.027145	1	5755	5755		18.262	6.3297	1	169310			10872	33070	8923	8933	11753	11753					0.17968147555279756
FFLGRRYV	8	Unmodified	_FFLGRRYV_					0	0	0			REV__ENST00000462934.5_1_7:6449016-6449310:-|nuORF	REV__ENST00000462934.5_1_7:6449016-6449310:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8132934570312	2	529.300719	1056.58688	-0.88224	-0.00046697	-3.7558	-0.001988	-4.638	-0.0024549	529.2986937222794	28.376	0.24917	28.376	28.19	28.439	0					7	4	2	0	0	0	0.028476	1	907	907		26.796	11.931	1	28531	+		10873	26119	8924	8934	11754	11754					0.06085476642260801
FFLGYVIFL	9	Unmodified	_FFLGYVIFL_					0	0	0			REV__tr|A0A553SFT1|A0A553SFT1_NIACIM48familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_09450PE=3SV=1	REV__tr|A0A553SFT1|A0A553SFT1_NIACIM48familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_09450PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	559.8170776367188	2	559.817879	1117.6212	1.1031	0.00061756	-3.6742	-0.0020569	-2.5711	-0.0014393	559.8157329084277	160.29	2.9539	160.29	159.57	162.53	0					135	58	4	0	0	0	0.61768	1	19000	19000		29.842	0	1	827610	+		10874	29619	8925	8935	11755	11755					0.06709880010498637
FFLGYVIFL	9	Unmodified	_FFLGYVIFL_					0	0	0			REV__tr|A0A553SFT1|A0A553SFT1_NIACIM48familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_09450PE=3SV=1	REV__tr|A0A553SFT1|A0A553SFT1_NIACIM48familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_09450PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	559.8173217773438	2	559.817879	1117.6212	-0.97773	-0.00054735	-2.8227	-0.0015802	-3.8004	-0.0021276	559.8160584775942	134.25	2.5628	133.13	132.52	135.08	-1.1226					125	51	4	0	0	0	0.42921	1	10894	10894		49.211	15.695	1	225320	+		10875	29619	8925	8935	11756	11756					0.06709880010498637
FFLKRRNKKKQ	11	Unmodified	_FFLKRRNKKKQ_					0	0	0		nc|ENSG00000080031|Q9HD43-3|PTPRH;nc|ENSG00000080031|Q9HD43-2|PTPRH;ENSG00000080031|ENST00000376350|PTPRH	nc|ENSG00000080031|Q9HD43-3|PTPRH	nc|ENSG00000080031|Q9HD43-3|PTPRH	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3096618652344	3	498.312288	1491.91504	-5.113	-0.0025478	0.297	0.000148	-4.816	-0.0023998	498.3123780141879	160.35	1.8473	160.12	159.68	161.53	-0.22697					120	37	4	0	0	0	0.72582	1	16430	16430		3.4087	0.55691	1	150420			10876	1627	8926	8936	11757	11757					0.1887546683308301
FFLKSSLSTMA	11	Unmodified	_FFLKSSLSTMA_					0	0	0			REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MSMS	OvCa9_classI_Rep4_	4	616.3244018554688	2	616.323199	1230.63185	0.0018769	1.1568E-06	-0.98787	-0.00060885	-0.986	-0.00060769	616.3222785476892	79.058	2.098	76.307	75.377	77.475	-2.7514					101	43	4	0	0	0	0.55686	1	6411	6411		39.253	0	1	516450	+		10877	22973	8927	8937	11758	11758					0.02575494602638173
FFLLAGCLR	9	Unmodified	_FFLLAGCLR_					0	0	0		nc|ENSG00000172869|Q9Y485|DMXL1;ENSG00000172869|ENST00000539542|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-MSMS	OvCa99_classI_Rep5	1	520.2920532226562	2	520.291505	1038.56846	-1.4985	-0.00077964	1.5027	0.00078185	0.0042537	2.2132E-06	520.2919770125893	27.665	0.5007	27.665	27.44	27.941	0					21	9	4	0	0	0	0.50066	1	835	835		42.474	3.6683	1	272230			10878	7324	8928	8938	11759	11759					0.050715986760451415
FFLLERTL	8	Unmodified	_FFLLERTL_					0	0	0			REV__ENSG00000205108|ENST00000378788|FAM205A	REV__ENSG00000205108|ENST00000378788|FAM205A	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.8202514648438	2	519.80276	1037.59097	0.88265	0.0004588	3.738	0.001943	4.6207	0.0024018	520.3066004955512	131.58	0.19733	131.36	131.2	131.4	-0.22696					5	3	2	0	0	0	0.028476	1	12969	12969		34.173	7.3764	1	63574	+		10879	23202	8929	8939	11760	11760					0.07367521345327077
FFLLFIFF	8	Unmodified	_FFLLFIFF_					0	0	0			REV__nc|ENSG00000103534|Q6UXY8-2|TMC5	REV__nc|ENSG00000103534|Q6UXY8-2|TMC5	MULTI-SECPEP	OvCa9_classI_Rep2	2	547.3001098632812	2	547.30969	1092.60483	0.24649	0.0001349	1.3231	0.00072413	1.5696	0.00085903	547.3101229931306	114.07	0.78914	113.95	113.61	114.4	-0.11777					32	15	3	0	0	0	0.028476	1	10800	10800		43.626	10.133	1	43049	+		10880	28777	8930	8940	11761	11761					0.062227988444192306
FFLLFIFF	8	Unmodified	_FFLLFIFF_					0	0	0			REV__nc|ENSG00000103534|Q6UXY8-2|TMC5	REV__nc|ENSG00000103534|Q6UXY8-2|TMC5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	547.30969	1092.60483	-0.70582	-0.0003863	2.7653	0.0015135	2.0594	0.0011272	547.3109884415277	114.97	0.59236	113.92	113.7	114.29	-1.055	0.0032834	0.0010154	NaN	43.626	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41335	+		10881	28777	8930	8940							0.062227988444192306
FFLLFIFF	8	Unmodified	_FFLLFIFF_					0	0	0			REV__nc|ENSG00000103534|Q6UXY8-2|TMC5	REV__nc|ENSG00000103534|Q6UXY8-2|TMC5	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	547.30969	1092.60483	0.061437	3.3625E-05	1.5557	0.00085146	1.6172	0.00088508	547.3103136426815	115.27	0.59513	113.88	113.67	114.27	-1.3977	-0.03911	-0.00030856	NaN	43.626	30	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50944	+		10882	28777	8930	8940							0.062227988444192306
FFLLLLKNCH	10	Unmodified	_FFLLLLKNCH_					0	0	0		ENST00000338051.4_1_5:134191249-134191336:+|nuORF	ENST00000338051.4_1_5:134191249-134191336:+|nuORF	ENST00000338051.4_1_5:134191249-134191336:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	624.3472290039062	2	624.352094	1246.68964	-3.4372	-0.002146	-3.4943	-0.0021817	-6.9315	-0.0043277	624.3497278259227	148.29	1.151	148.06	147.62	148.77	-0.22696					41	22	3	0	0	0	0.81992	1	15000	15000		16.473	0.83134	1	63195			10883	10531	8931	8941	11762	11762					0.07615801318729609
FFLLRLYV	8	Unmodified	_FFLLRLYV_					0	0	0			REV__ENSG00000170837|ENST00000304411|GPR27	REV__ENSG00000170837|ENST00000304411|GPR27	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.8179321289062	2	535.823495	1069.63244	-6.0872	-0.0032616	-4.1037	-0.0021988	-10.191	-0.0054605	535.8212122095977	156.94	0.82646	155.4	155.1	155.93	-1.545					50	23	3	0	0	0	0.75915	1	15528	15528		20.482	0	1	85196	+		10884	21566	8932	8942	11763	11763					0.10040702104652155
FFLRNKQF	8	Unmodified	_FFLRNKQF_					0	0	0			REV__nc|ENSG00000164362|O14746-3|TERT	REV__nc|ENSG00000164362|O14746-3|TERT	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.8116455078125	2	550.306001	1098.59745	-1.367	-0.00075228	-3.5475	-0.0019522	-4.9145	-0.0027045	550.3039026855733	127.29	0.29889	125.85	125.74	126.04	-1.4357					7	5	2	0	0	0	0.028476	1	12133	12133		44.531	14.027	1	21272	+		10885	20982	8933	8943	11764	11764					0.052094592967023345
FFLRNKQF	8	Unmodified	_FFLRNKQF_					0	0	0			REV__nc|ENSG00000164362|O14746-3|TERT	REV__nc|ENSG00000164362|O14746-3|TERT	MULTI-MATCH	OvCa9_classI_Rep3	3		2	550.306001	1098.59745	0.74317	0.00040897	-4.398	-0.0024202	-3.6548	-0.0020113	550.3032630493773	126.98	0.26275	125.91	125.76	126.02	-1.0715	0.029965	-0.00060456	NaN	44.531	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11060	+		10886	20982	8933	8943							0.052094592967023345
FFLSPRSSP	9	Unmodified	_FFLSPRSSP_					0	0	0		ENST00000489822.5_1_10:121347751-121356470:-|nuORF	ENST00000489822.5_1_10:121347751-121356470:-|nuORF	ENST00000489822.5_1_10:121347751-121356470:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.3101196289062	2	519.274367	1036.53418	1.3113	0.0006809	0.023313	1.2106E-05	1.3346	0.00069301	519.2743765916003	125.72	0.63357	125.72	125.45	126.09	0					31	13	3	0	0	0	0.027462	1	14573	14573		34.173	17.699	1	116460			10887	12684	8934	8944	11765	11765					0.01737473788830357
FFLWLLKS	8	Unmodified	_FFLWLLKS_					0	0	0		ENST00000415861.2_1_6:109689135-109689186:-|nuORF	ENST00000415861.2_1_6:109689135-109689186:-|nuORF	ENST00000415861.2_1_6:109689135-109689186:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.3141479492188	2	527.310221	1052.60589	0.99	0.00052204	-1.6968	-0.00089473	-0.70677	-0.00037269	527.3087373825963	125.2	0.20948	124.15	124.05	124.26	-1.0519					5	3	2	0	0	0	0.028476	1	9738	9738		44.531	12.576	1	3774.2			10888	11595	8935	8945	11766	11766					0.08169013213318976
FFLYLFLH	8	Unmodified	_FFLYLFLH_					0	0	0			REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|248|3|anti-sense	REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|248|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	550.7828979492188	2	550.302396	1098.59024	1.2773	0.00070289	4.2386	0.0023325	5.5159	0.0030354	550.3046793177266	42.651	0.5918	39.942	39.67	40.262	-2.7097					19	11	2	0	0	0	0.028476	1	2309	2309		24.504	0	1	37228	+		10889	28387	8936	8946	11767	11767					0.04488726696285994
FFMFVIVL	8	Unmodified	_FFMFVIVL_					0	0	0			REV__tr|A0A553SS71|A0A553SS71_NIACISporegerminationproteinKBOS=NialliacirculansOX=1397GN=CEQ21_02375PE=3SV=1	REV__tr|A0A553SS71|A0A553SS71_NIACISporegerminationproteinKBOS=NialliacirculansOX=1397GN=CEQ21_02375PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.30181884765625	2	508.2879	1014.56125	0.22931	0.00011656	-1.9062	-0.00096889	-1.6769	-0.00085233	508.2867612117302	82.362	1.2315	80.751	80.216	81.448	-1.6107					51	23	4	0	0	0	0.028476	1	6964	6964		43.626	0	1	477140	+		10890	30809	8937	8947	11768	11768					0.05454866075638165
FFMYVIIF	8	Unmodified	_FFMYVIIF_					0	0	0		tr|A0A7D6VTC2|A0A7D6VTC2_9CLOTTrkHfamilypotassiumuptakeproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16710PE=3SV=1	tr|A0A7D6VTC2|A0A7D6VTC2_9CLOTTrkHfamilypotassiumuptakeproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16710PE=3SV=1	tr|A0A7D6VTC2|A0A7D6VTC2_9CLOTTrkHfamilypotassiumuptakeproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16710PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.344970703125	2	540.285357	1078.55616	2.2949	0.0012399	0.97977	0.00052935	3.2747	0.0017693	540.2861156692909	113.19	0.22806	113.19	113.02	113.24	0					6	4	2	0	0	0	0.028476	1	12883	12883		33.493	0	1	64986			10891	35104	8938	8948	11769	11769					0.020025622130106058
FFNIVLEVLQ	10	Unmodified	_FFNIVLEVLQ_					0	0	0		L1MDa_dup2778|chr7:47340719-47342131:-|2.305162096757514|0.4082244758708406|2.5|429.0|52|3|sense	L1MDa_dup2778|chr7:47340719-47342131:-|2.305162096757514|0.4082244758708406|2.5|429.0|52|3|sense	L1MDa_dup2778|chr7:47340719-47342131:-|2.305162096757514|0.4082244758708406|2.5|429.0|52|3|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3506469726562	2	611.347532	1220.68051	2.8968	0.0017709	2.8129	0.0017197	5.7097	0.0034906	611.3491630908582	125.96	1.25	124.91	124.58	125.83	-1.0525					67	23	4	0	0	0	0.44431	1	9821	9821		62.107	14.45	1	429160			10892	14614	8939	8949	11770	11770					0.07899731234056162
FFPFLSLLYQR	11	Unmodified	_FFPFLSLLYQR_					0	0	0			REV__ENST00000532865.5_2_6:26365433-26365496:+|nuORF	REV__ENST00000532865.5_2_6:26365433-26365496:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	477.5997314453125	3	477.599212	1429.77581	1.6723	0.00079867	0.2496	0.00011921	1.9219	0.00091788	477.5992387084214	66.338	0.91516	63.392	63.112	64.027	-2.9459					48	17	4	0	0	0	0.72472	1	2715	2715		19.263	0	1	91492	+		10893	27244	8940	8950	11771	11771					0.07811084425111403
FFRDFSLL	8	Unmodified	_FFRDFSLL_					0	0	0		ENSG00000182871|ENST00000651438|COL18A1;nc|ENSG00000182871|P39060-1|COL18A1;nc|ENSG00000182871|P39060|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	MULTI-MSMS	OvCa9_classI_Rep2	2	522.778076171875	2	522.779285	1043.54402	0.62719	0.00032788	-0.91087	-0.00047619	-0.28368	-0.0001483	522.7785887312914	124.27	1.1341	124.04	123.63	124.77	-0.23193					52	22	4	0	0	0	0.36941	1	12079	12079		94.006	3.2298	1	132650			10894	8031	8941	8951	11772	11772					0.023986617941773147
FFRDFSLL	8	Unmodified	_FFRDFSLL_					0	0	0		ENSG00000182871|ENST00000651438|COL18A1;nc|ENSG00000182871|P39060-1|COL18A1;nc|ENSG00000182871|P39060|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	MULTI-MSMS	OvCa9_classI_Rep3	3	522.7779541015625	2	522.779285	1043.54402	1.3677	0.00071502	-1.665	-0.0008704	-0.29722	-0.00015538	522.7782389666856	125.24	1.0903	124.19	123.84	124.94	-1.0519					49	20	3	0	0	0	0.2589	2	9733	9733;9739		114.59	20.579	1	149440			10895	8031	8941	8951	11773;11774	11773					0.023986617941773147
FFRDFSLL	8	Unmodified	_FFRDFSLL_					0	0	0		ENSG00000182871|ENST00000651438|COL18A1;nc|ENSG00000182871|P39060-1|COL18A1;nc|ENSG00000182871|P39060|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.7789306640625	2	522.779285	1043.54402	-2.3955	-0.0012523	1.9423	0.0010154	-0.45321	-0.00023693	522.7801460343853	125.53	1.185	124.12	123.83	125.02	-1.4143					66	23	4	0	0	0	0.39692	1	11920	11920		88.643	11.325	1	151950			10896	8031	8941	8951	11775	11775					0.023986617941773147
FFRLKIVK	8	Unmodified	_FFRLKIVK_					0	0	0		tr|A0A7D6VSS1|A0A7D6VSS1_9CLOTV-typeATPsynthasesubunitDOS=ClostridiumintestinaleOX=36845GN=atpDPE=3SV=1	tr|A0A7D6VSS1|A0A7D6VSS1_9CLOTV-typeATPsynthasesubunitDOS=ClostridiumintestinaleOX=36845GN=atpDPE=3SV=1	tr|A0A7D6VSS1|A0A7D6VSS1_9CLOTV-typeATPsynthasesubunitDOS=ClostridiumintestinaleOX=36845GN=atpDPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.8147583007812	2	525.844762	1049.67497	-1.7626	-0.00092687	-2.3701	-0.0012463	-4.1327	-0.0021732	525.843245638405	95.646	1.0578	93.177	92.761	93.819	-2.4685					41	20	3	0	0	0	0.028476	1	8487	8487		13.775	0	1	53199			10897	35053	8942	8952	11776	11776					0.1521209723289303
FFRLVLADV	9	Unmodified	_FFRLVLADV_					0	0	0			REV__ENST00000587406.5_1_19:19232302-19249261:-|nuORF	REV__ENST00000587406.5_1_19:19232302-19249261:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.26123046875	2	540.316035	1078.61752	1.8502	0.0009997	-0.55422	-0.00029946	1.296	0.00070024	540.3156543391622	129.21	0.79156	129.21	128.79	129.59	0					31	16	3	0	0	0	0.027462	1	14935	14935		44.117	8.4985	1	107260	+		10898	16771	8943	8953	11777	11777					0.08135210236650892
FFRRKRRRVLP	11	Unmodified	_FFRRKRRRVLP_					0	0	0			REV__ENSG00000186479|ENST00000334025|RGS7BP	REV__ENSG00000186479|ENST00000334025|RGS7BP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.9559631347656	3	510.991661	1529.95315	-1.6044	-0.00081985	-3.0149	-0.0015406	-4.6193	-0.0023604	510.9908686748257	48.974	0.2096	45.849	45.744	45.954	-3.1248					5	3	2	0	0	0	0.026364	1	2732	2732		13.508	10.099	1	4688	+		10899	22590	8944	8954	11778	11778					0.20937397538432378
FFRSTPLP	8	Unmodified	_FFRSTPLP_					0	0	0		ENST00000488976.5_1_3:183962900-183966721:-|nuORF;ENST00000461415.5_1_3:183962900-183966669:-|nuORF;ENST00000482048.1_1_3:183962900-183966716:-|nuORF	ENST00000488976.5_1_3:183962900-183966721:-|nuORF	ENST00000488976.5_1_3:183962900-183966721:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.7579040527344	2	482.766178	963.517802	3.3284	0.0016069	-3.8416	-0.0018546	-0.51312	-0.00024772	482.76444691958255	133.6	0.53714	132.07	131.95	132.49	-1.5257					19	10	2	0	0	0	0.028476	1	12889	12889		53.351	22.848	1	53270			10900	12179	8945	8955	11779	11779					0.03458392622712836
FFRWVRRAWQR	11	Unmodified	_FFRWVRRAWQR_					0	0	0		ENSG00000185955|ENST00000332375|SPACDR	ENSG00000185955|ENST00000332375|SPACDR	ENSG00000185955|ENST00000332375|SPACDR	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.8054809570312	3	536.632132	1606.87457	-0.1311	-7.0352E-05	1.853	0.00099439	1.7219	0.00092404	536.6329778881126	71.187	0.47215	71.187	70.994	71.466	0					16	11	2	0	0	0	0.026553	1	6910	6910		1.3219	0	1	337280			10901	8304	8946	8956	11780	11780					0.09540545233335251
FFSAKTEATP	10	Unmodified	_FFSAKTEATP_					0	0	0			REV__ENSG00000180530|ENST00000318948|NRIP1	REV__ENSG00000180530|ENST00000318948|NRIP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.80078125	2	549.776939	1097.53933	1.3004	0.00071491	0.089431	4.9167E-05	1.3898	0.00076408	550.2781918903331	130.58	0.28783	130.58	130.34	130.63	0					8	5	2	0	0	0	0.027021	1	15144	15144		21.96	0	1	85360	+		10902	22178	8947	8957	11781	11781					-0.005542671392504417
FFSLTFPFI	9	Unmodified	_FFSLTFPFI_					0	0	0			REV__ENSG00000280204|ENST00000641544|OR1S1	REV__ENSG00000280204|ENST00000641544|OR1S1	MULTI-MSMS	OvCa99_classI_Rep5	1	559.7962036132812	2	559.799686	1117.58482	2.0567	0.0011514	3.1911	0.0017864	5.2478	0.0029377	559.8008253690813	148.14	0.68797	148.14	147.93	148.62	0					23	13	3	0	0	0	0.42057	1	17344	17344		50.025	2.1089	1	56484	+		10903	23659	8948	8958	11782	11782					0.030730031138091363
FFSRLVEI	8	Unmodified	_FFSRLVEI_					0	0	0		ENSG00000155961|ENST00000369454|RAB39B	ENSG00000155961|ENST00000369454|RAB39B	ENSG00000155961|ENST00000369454|RAB39B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.25982666015625	2	505.78711	1009.55967	-1.1419	-0.00057757	0.57838	0.00029254	-0.56354	-0.00028503	505.7873484454504	81.326	1.751	78.615	78.297	80.049	-2.7106					81	35	4	0	0	0	0.028476	1	6656	6656		55.504	9.5523	1	870390			10904	5812	8949	8959	11783	11783					0.0552694831125109
FFTFLFVLV	9	Unmodified	_FFTFLFVLV_					0	0	0			REV__tr|A0A553SKV6|A0A553SKV6_NIACIStageIIIsporulationproteinAEOS=NialliacirculansOX=1397GN=spoIIIAEPE=4SV=1	REV__tr|A0A553SKV6|A0A553SKV6_NIACIStageIIIsporulationproteinAEOS=NialliacirculansOX=1397GN=spoIIIAEPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	566.7819213867188	2	566.825704	1131.63685	0.62569	0.00035466	3.4702	0.001967	4.0959	0.0023217	566.8271793183344	126.41	0.49072	126.17	126	126.49	-0.2359					13	9	2	0	0	0	0.027462	1	12319	12319		26.796	11.931	1	16463	+		10905	30155	8950	8960	11784	11784					0.07630166527565052
FFTPKVAII	9	Unmodified	_FFTPKVAII_					0	0	0			REV__ENSG00000138375|ENST00000357276|SMARCAL1	REV__ENSG00000138375|ENST00000357276|SMARCAL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.3164672851562	2	518.315503	1034.61645	2.0408	0.0010578	0.66766	0.00034606	2.7085	0.0014039	518.3157944372941	136.58	3.063	135.03	133.61	136.67	-1.5437					148	63	3	0	0	0	0.59259	1	13281	13281		32.812	0.85756	1	141910	+		10906	19533	8951	8961	11785	11785					0.10052995867749814
FFVEWFEYRKR	11	Unmodified	_FFVEWFEYRKR_					0	0	0		ENSG00000188312|ENST00000375587|CENPP	ENSG00000188312|ENST00000375587|CENPP	ENSG00000188312|ENST00000375587|CENPP	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.7997436523438	3	536.277021	1605.80923	2.2279	0.0011948	2.4625	0.0013206	4.6904	0.0025153	536.2769033785602	76.265	0.80322	76.265	75.996	76.799	0					36	19	3	0	0	0	0.026488	1	7649	7649		10.104	3.4443	1	891770			10907	8463	8952	8962	11786	11786					0.030560861969661346
FFVLLKLRMA	10	Unmodified	_FFVLLKLRMA_					0	0	0			REV__ENST00000359152.9_1_11:85405646-85405715:-|nuORF	REV__ENST00000359152.9_1_11:85405646-85405715:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.3729858398438	2	619.378112	1236.74167	-6.2743	-0.0038862	-3.9895	-0.002471	-10.264	-0.0063572	619.3755572557021	159.71	1.0789	158.1	157.75	158.83	-1.6101					53	24	3	0	0	0	0.81992	1	15761	15761		16.473	2.336	1	88655	+		10908	24809	8953	8963	11787	11787					0.13276964732472152
FFVPLSYLL	9	Unmodified	_FFVPLSYLL_					0	0	0		ENST00000515876.5_1_4:941527-949679:+|nuORF;ENST00000452360.6_1_4:942397-950358:+|nuORF;nc|ENSG00000127419|Q9BSA9-2|TMEM175;ENSG00000127419|ENST00000264771|TMEM175;ENST00000506669.1_1_4:946199-949276:+|nuORF;TMEM175|p.F250Gfs*48|1|0.13|ENSG00000127419|chr4:955795-955796|-/GGGTTCCACCCAGGGTC|frameshift_variant	ENST00000515876.5_1_4:941527-949679:+|nuORF	ENST00000515876.5_1_4:941527-949679:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.8111572265625	2	549.815336	1097.61612	-1.4658	-0.00080592	-2.206	-0.0012129	-3.6718	-0.0020188	549.8139391157771	127.11	1.6247	125.67	125.29	126.92	-1.4357					64	31	3	0	0	0	0.34496	1	12121	12121		57.811	7.7867	1	78823			10909	3831	8954	8964	11788	11788					0.07121576147892483
FFVVLSVVLT	10	Unmodified	_FFVVLSVVLT_					0	0	0			REV__tr|A0A7D6ZYU0|A0A7D6ZYU0_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17765PE=3SV=1	REV__tr|A0A7D6ZYU0|A0A7D6ZYU0_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17765PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.346923828125	2	562.341718	1122.66888	1.2434	0.00069921	1.8105	0.0010181	3.0539	0.0017173	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.7759	1	14297	14297		21.96	0	1	683710	+		10910	32388	8955	8965	11789	11789					0.11245534210706865
FFWKLGDSF	9	Unmodified	_FFWKLGDSF_					0	0	0		ENST00000407924.2_1_6:27705341-27705923:-|nuORF	ENST00000407924.2_1_6:27705341-27705923:-|nuORF	ENST00000407924.2_1_6:27705341-27705923:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	573.7868041992188	2	573.784567	1145.55458	0.729	0.00041829	0.37175	0.00021331	1.1008	0.00063159	573.7846199576873	151.18	1.1311	151.18	150.84	151.97	0					62	22	4	0	0	0	0.27546	1	17720	17720		65.803	5.5092	1	995810			10911	11504	8956	8966	11790	11790					-0.01237355551370456
FFYGLLTLF	9	Unmodified	_FFYGLLTLF_					0	0	0			REV__tr|A0A553SPR1|A0A553SPR1_NIACIDUF624domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26905PE=4SV=1	REV__tr|A0A553SPR1|A0A553SPR1_NIACIDUF624domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26905PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	560.8071899414062	2	560.807511	1119.60047	2.2065	0.0012374	-4.0621	-0.002278	-1.8555	-0.0010406	560.8052285356309	127.07	2.8987	127.07	126.69	129.59	0					222	62	5	0	0	0	0.32337	1	14753	14753		60.294	4.7898	1	31631000	+		10912	30561	8957	8967	11791	11791					0.04545289630846128
FGAAGAYPSSI	11	Unmodified	_FGAAGAYPSSI_					0	0	0			REV__nc|ENSG00000119314|O95758-7|PTBP3	REV__nc|ENSG00000119314|O95758-7|PTBP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.7656860351562	2	520.756007	1039.49746	0.47811	0.00024898	0.28048	0.00014606	0.75859	0.00039504	520.7561354747219	154.24	0.64264	154.24	153.93	154.57	0					23	12	3	0	0	0	0.025329	1	18094	18094		35.618	5.1146	1	58254	+		10913	18434	8958	8968	11792	11792					-0.020708228277499074
FGADSDDNMDE	11	Unmodified	_FGADSDDNMDE_					0	0	0		ENSG00000113356|ENST00000651687|POLR3G	ENSG00000113356|ENST00000651687|POLR3G	ENSG00000113356|ENST00000651687|POLR3G	MULTI-SECPEP	OvCa99_classI_Rep5	1	607.802001953125	2	608.208957	1214.40336	0.68904	0.00041908	3.4496	0.0020981	4.1386	0.0025171	608.2110121726856	161.34	1.067	161.34	161.01	162.07	0					28	20	2	0	0	0	0.025638	1	18927	18927		30.318	0	1	32364			10914	2967	8959	8969	11793	11793					-0.19526374502856925
FGAEEIQAKL	10	Unmodified	_FGAEEIQAKL_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8016357421875	2	553.298039	1104.58152	-0.30854	-0.00017072	1.4269	0.00078952	1.1184	0.0006188	553.297994158776	121.22	1.2876	119.87	119.59	120.88	-1.3479					45	24	2	0	0	0	0.3094	1	11453	11453		79.713	10.926	1	92303	+		10915	29026	8960	8970	11794	11794					0.033417082691585165
FGAEEIQAKL	10	Unmodified	_FGAEEIQAKL_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	553.298039	1104.58152	-0.48811	-0.00027007	-1.7634	-0.00097569	-2.2515	-0.0012458	553.2979376397185	120.27	1.3816	120.1	119.74	121.12	-0.17137	0.11165	-0.0017072	NaN	79.713	85	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91556	+		10916	29026	8960	8970							0.033417082691585165
FGAGGRER	8	Unmodified	_FGAGGRER_					0	0	0			REV__nc|ENSG00000175854|Q1ZZU3|SWI5	REV__nc|ENSG00000175854|Q1ZZU3|SWI5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	425.753662109375	2	425.219926	848.425299	0.70038	0.00029782	1.1651	0.00049543	1.8655	0.00079324	425.2201996002442	141.26	0.99394	139.8	139.5	140.5	-1.4627					24	18	2	0	0	0	0.028476	1	13789	13789		28.254	11.781	1	23341	+		10917	29018	8961	8971	11795	11795					-0.004976923908088793
FGAGGRER	8	Unmodified	_FGAGGRER_					0	0	0			REV__nc|ENSG00000175854|Q1ZZU3|SWI5	REV__nc|ENSG00000175854|Q1ZZU3|SWI5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	425.219926	848.425299	-1.5113	-0.00064266	1.2282	0.00052224	-0.28319	-0.00012042	425.21997229160763	140.81	1.0816	139.78	138.94	140.02	-1.0339	-0.009145	2.8097E-05	NaN	28.254	25	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18616	+		10918	29018	8961	8971							-0.004976923908088793
FGAGRSLF	8	Unmodified	_FGAGRSLF_					0	0	0			REV__ENST00000534035.1_1_11:44102597-44105415:+|nuORF	REV__ENST00000534035.1_1_11:44102597-44105415:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	427.7294616699219	2	427.729595	853.444637	-0.90128	-0.0003855	1.2506	0.00053491	0.3493	0.0001494	427.7299657003553	43.632	0.68815	43.632	43.435	44.123	0					39	15	3	0	0	0	0.47599	1	2891	2891		79.939	19.645	1	1917000	+		10919	17987	8962	8972	11796	11796					0.012052639000899035
FGAIRDILI	9	Unmodified	_FGAIRDILI_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	OvCa9_classI_Rep3	3	509.3057861328125	2	509.30821	1016.60187	-3.8689	-0.0019705	-0.3316	-0.00016889	-4.2005	-0.0021393	509.30784512511417	146.87	1.2014	145.91	145.59	146.79	-0.95946					63	23	4	0	0	0	0.71696	1	12342	12342		12.207	0.69583	1	121690	+		10920	22731	8963	8973	11797	11797					0.09422923719614573
FGALAHLRVP	10	Unmodified	_FGALAHLRVP_					0	0	0			REV__nc|ENSG00000291151|Q3KNT7-2|NSUN5P1	REV__nc|ENSG00000291151|Q3KNT7-2|NSUN5P1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.6625366210938	2	540.819276	1079.624	-1.1906	-0.00064389	0.81794	0.00044236	-0.37264	-0.00020153	541.3216364239433	93.761	1.9088	91.254	90.664	92.572	-2.5072					87	39	3	0	0	0	0.026639	1	8267	8267		44.117	0	1	194000	+		10921	18938	8964	8974	11798	11798					0.08737148188038191
FGALFPTFII	10	Unmodified	_FGALFPTFII_					0	0	0		tr|A0A553STZ3|A0A553STZ3_NIACIChromatetransporterOS=NialliacirculansOX=1397GN=CEQ21_05925PE=3SV=1	tr|A0A553STZ3|A0A553STZ3_NIACIChromatetransporterOS=NialliacirculansOX=1397GN=CEQ21_05925PE=3SV=1	tr|A0A553STZ3|A0A553STZ3_NIACIChromatetransporterOS=NialliacirculansOX=1397GN=CEQ21_05925PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	563.8212890625	2	563.320786	1124.62702	2.0745	0.0011686	-3.5482	-0.0019987	-1.4736	-0.00083013	563.3185654524993	127.03	0.71037	127.03	126.61	127.32	0					43	15	4	0	0	0	0.41846	1	14707	14707		65.803	18.146	1	554620			10922	34553	8965	8975	11799	11799					0.0696897852217262
FGANPNICFR	10	Unmodified	_FGANPNICFR_					0	0	0			REV__ENSG00000198252|ENST00000354586|STYX	REV__ENSG00000198252|ENST00000354586|STYX	MULTI-SECPEP	OvCa9_classI_Rep3	3	569.2872314453125	2	569.776751	1137.53895	-0.27603	-0.00015727	3.0509	0.0017383	2.7748	0.001581	569.7779873316482	103.39	0.89382	101.95	101.66	102.55	-1.4347					33	16	3	0	0	0	0.026688	1	7130	7130		40.778	21.418	1	118070	+		10923	23005	8966	8976	11800	11800					-0.02431965340088027
FGANPNICFR	10	Unmodified	_FGANPNICFR_					0	0	0			REV__ENSG00000198252|ENST00000354586|STYX	REV__ENSG00000198252|ENST00000354586|STYX	MULTI-MATCH	OvCa9_classI_Rep2	2		2	569.776751	1137.53895	-1.5216	-0.00086699	3.6193	0.0020622	2.0976	0.0011952	569.7785024888367	102.54	0.69044	101.86	101.64	102.33	-0.68459	-0.044218	0.00025443	NaN	64.207	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84843	+		10924	23005	8966	8976							-0.02431965340088027
FGAVLAAFGN	10	Unmodified	_FGAVLAAFGN_					0	0	0		ENSG00000237110|ENST00000434551|TAAR9	ENSG00000237110|ENST00000434551|TAAR9	ENSG00000237110|ENST00000434551|TAAR9	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.2382507324219	2	483.75581	965.497067	-0.69604	-0.00033671	-2.3589	-0.0011411	-3.0549	-0.0014778	483.7534240149822	51.924	0.20877	51.924	51.829	52.038	0					7	4	2	0	0	0	0.026982	1	4051	4051		30.504	14.862	1	56781			10925	9315	8967	8977	11801	11801					0.012938022430489582
FGCFTATMC	9	Unmodified	_FGCFTATMC_					0	0	0			REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|427|3|anti-sense	REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|427|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.33685302734375	2	490.687367	979.360181	2.3626	0.0011593	-0.57358	-0.00028145	1.789	0.00087786	490.687877343305	137.23	0.14687	135.69	135.62	135.76	-1.5437					4	2	2	0	0	0	0.027462	1	13335	13335		12.207	0	1	7302.8	+		10926	28212	8968	8978	11802	11802					-0.1303251429485499
FGCGNQLPKT	10	Unmodified	_FGCGNQLPKT_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.C4432Lfs*27|1|0.15|ENSG00000055609|chr7:152148633-152148634|-/AGCCTGTAATCCCAGCTACTCGGGAGGCTGAG|frameshift_variant;RHEB-MLL3|1|fusion	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-MSMS	OvCa9_classI_Rep2	2	532.7623901367188	2	532.763309	1063.51206	-0.45972	-0.00024492	0.14604	7.7803E-05	-0.31369	-0.00016712	532.7632052598339	112.88	3.504	112.76	111.98	115.49	-0.12174					139	70	3	0	0	0	0.69073	1	10709	10709		31.53	1.0262	1	216680			10927	1222	8969	8979	11803	11803					-0.017150739512771906
FGDLSQRDRS	10	Unmodified	_FGDLSQRDRS_					0	0	0			REV__nc|ENSG00000170776|Q12802-4|AKAP13	REV__nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.8242797851562	2	590.788901	1179.56325	-0.67629	-0.00039955	0.012765	7.5412E-06	-0.66353	-0.00039201	590.7897504277673	36.328	0.32317	36.328	36.164	36.487	0					9	6	2	0	0	0	0.026659	1	1886	1886		54.776	0	1	71678	+		10928	21560	8970	8980	11804	11804					-0.019350336528532353
FGDVSVSWVV	10	Unmodified	_FGDVSVSWVV_					0	0	0		ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant;ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-4|ADGRV1;nc|ENSG00000164199|Q8WXG9-3|ADGRV1;ENST00000504142.2_2_5:89924394-89949789:+|nuORF	ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	546.7855834960938	2	547.779482	1093.54441	1.045	0.00057243	4.2908	0.0023504	5.3358	0.0029228	547.7809995926048	41.67	0.34446	38.96	38.832	39.177	-2.7097					9	6	2	0	0	0	0.027021	1	2197	2197		21.96	0	1	10411			10929	42	8971	8981	11805	11805					0.0013803672338781325
FGFAAGHK	8	Unmodified	_FGFAAGHK_					0	0	0		ENST00000550566.6_1_12:112846864-112847275:-|nuORF	ENST00000550566.6_1_12:112846864-112847275:-|nuORF	ENST00000550566.6_1_12:112846864-112847275:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	417.7177429199219	2	417.716488	833.418422	-0.047377	-1.979E-05	0.31733	0.00013255	0.26995	0.00011276	417.7164774636163	68.279	1.5973	68.279	67.916	69.513	0					88	38	4	0	0	0	0.68312	2	6427	6427;6454		46.766	9.738	1	4974200			10930	13591	8972	8982	11806;11807	11806					-0.004950052713979858
FGFAAGHK	8	Unmodified	_FGFAAGHK_					0	0	0		ENST00000550566.6_1_12:112846864-112847275:-|nuORF	ENST00000550566.6_1_12:112846864-112847275:-|nuORF	ENST00000550566.6_1_12:112846864-112847275:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	417.71746826171875	2	417.716488	833.418422	2.6452	0.001105	0.0088471	3.6956E-06	2.6541	0.0011087	417.71632504075836	120.31	2.3096	120.31	120.05	122.36	0					128	52	3	0	0	0	0.64377	3	13879	13855;13879;13978		54.765	7.9982	1	6297000			10931	13591	8972	8982	11808;11809;11810	11809					-0.004950052713979858
FGFAAGHK	8	Unmodified	_FGFAAGHK_					0	0	0		ENST00000550566.6_1_12:112846864-112847275:-|nuORF	ENST00000550566.6_1_12:112846864-112847275:-|nuORF	ENST00000550566.6_1_12:112846864-112847275:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	417.7177429199219	2	417.716488	833.418422	1.5603	0.00065178	0.56199	0.00023475	2.1223	0.00088653	417.7165732909185	155.81	4.0147	155.81	153.69	157.7	0					162	79	3	0	0	0	0.72134	1	18277	18277		39.021	1.993	1	421790			10932	13591	8972	8982	11811	11811					-0.004950052713979858
FGFAAGHK	8	Unmodified	_FGFAAGHK_					0	0	0		ENST00000550566.6_1_12:112846864-112847275:-|nuORF	ENST00000550566.6_1_12:112846864-112847275:-|nuORF	ENST00000550566.6_1_12:112846864-112847275:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	417.71795654296875	2	417.716488	833.418422	1.3381	0.00055895	0.98394	0.00041101	2.322	0.00096995	417.7167388697413	158.03	2.1569	158.03	157.65	159.81	0					84	44	3	0	0	0	0.72922	1	18600	18600		37.028	0	1	192830			10933	13591	8972	8982	11812	11812					-0.004950052713979858
FGFLGKIDEL	10	Unmodified	_FGFLGKIDEL_					0	0	0		nc|ENSG00000116754|Q05519-2|SRSF11;ENSG00000116754|ENST00000370949|SRSF11;ENST00000469170.5_1_1:70687319-70696797:+|nuORF;SRSF11-C11orf49|3|fusion;SRSF11-C11orf49|4|fusion;SRSF11-C11orf49|2|fusion;SRSF11-C11orf49|1|fusion	nc|ENSG00000116754|Q05519-2|SRSF11	nc|ENSG00000116754|Q05519-2|SRSF11	MULTI-MSMS	OvCa99_classI_Rep5	1	569.806884765625	2	569.810782	1137.60701	1.6612	0.00094657	1.2118	0.00069047	2.8729	0.001637	569.8115022915865	129.81	0.52168	129.81	129.63	130.15	0					21	10	3	0	0	0	0.52439	1	15061	15061		51.193	6.8155	1	155940			10934	3207	8973	8983	11813	11813					0.04371182791555839
FGFLYLLTF	9	Unmodified	_FGFLYLLTF_					0	0	0		nc|ENSG00000285010|A0A2R8YFL7|OOSP4A	nc|ENSG00000285010|A0A2R8YFL7|OOSP4A	nc|ENSG00000285010|A0A2R8YFL7|OOSP4A	MULTI-MSMS	OvCa99_classI_Rep5	1	560.8074340820312	2	560.807511	1119.60047	2.2065	0.0012374	-4.0621	-0.002278	-1.8555	-0.0010406	560.8052285356309	127.07	2.8987	127.07	126.69	129.59	0					222	62	5	0	0	0	0.37146	2	14728	14728;15002		54.765	3.4292	1	31631000			10935	15383	8974	8984	11814;11815	11814					0.04545289630846128
FGGGGAGA	8	Unmodified	_FGGGGAGA_					0	0	0			REV__ENSG00000106031|ENST00000649031|HOXA13	REV__ENSG00000106031|ENST00000649031|HOXA13	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.3052978515625	1	593.267801	592.260525	-0.20496	-0.0001216	1.4145	0.00083918	1.2095	0.00071758	593.2664045802164	68.545	0.12464	68.545	68.481	68.606	0					4	2	2	0	0	0	0.028476	1	6478	6478		5.0869	0	1	75797	+		10936	17776	8975	8985	11816	11816					-0.051915045306259344
FGGGGGGK	8	Unmodified	_FGGGGGGK_					0	0	0		ENST00000428095.1_1_3:196098887-196159300:-|nuORF;ENST00000493566.1_1_3:196127571-196159297:-|nuORF	ENST00000428095.1_1_3:196098887-196159300:-|nuORF	ENST00000428095.1_1_3:196098887-196159300:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	635.7665405273438	1	636.31	635.302724	2.962	0.0018848	-1.4296	-0.00090969	1.5324	0.00097509	636.3090364374387	87.876	0.50024	87.876	87.671	88.171	0					13	11	2	0	0	0	0.028476	1	9337	9337		21.702	1.2205	1	270660			10937	11769	8976	8986	11817	11817					-0.02951529122242391
FGGIPYPLVLM	11	Unmodified	_FGGIPYPLVLM_					0	0	0			REV__tr|A0A7D6ZGD0|A0A7D6ZGD0_9CLOTDUF4386domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17900PE=4SV=1	REV__tr|A0A7D6ZGD0|A0A7D6ZGD0_9CLOTDUF4386domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17900PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	602.9104614257812	2	603.833203	1205.65185	-1.118	-0.00067506	1.9667	0.0011875	0.84873	0.00051249	603.8344457155102	57.312	0.59472	54.52	54.08	54.674	-2.7921					21	11	2	0	0	0	0.025902	1	4075	4075		24.203	0	1	87694	+		10938	31994	8977	8987	11818	11818					0.057252903332482674
FGGLPLDESL	10	Unmodified	_FGGLPLDESL_					0	0	0		tr|A0A7D7A309|A0A7D7A309_9CLOTPseudouridinesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20000PE=3SV=1	tr|A0A7D7A309|A0A7D7A309_9CLOTPseudouridinesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20000PE=3SV=1	tr|A0A7D7A309|A0A7D7A309_9CLOTPseudouridinesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20000PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	524.271484375	2	524.27149	1046.52843	-1.2665	-0.00066397	1.0965	0.00057489	-0.16992	-8.9084E-05	524.2719353297791	119.84	3.5537	119.67	119.05	122.61	-0.17138					188	71	5	0	0	0	0.37918	1	11593	11593		71.296	2.5089	1	902400			10939	36098	8978	8988	11819	11819					0.00702330486478786
FGGNLGTH	8	Unmodified	_FGGNLGTH_					0	0	0		CIC|p.K921Rfs*3|1|0.16|ENSG00000079432|chr19:42291620-42291620|A/-|frameshift_variant;CIC|p.V1007Afs*28|1|0.32|ENSG00000079432|chr19:42292310-42292322|GTGCAGTCAGCGG/-|frameshift_variant;ENSG00000079432|ENST00000681038|CIC	CIC|p.K921Rfs*3|1|0.16|ENSG00000079432|chr19:42291620-42291620|A/-|frameshift_variant	CIC|p.K921Rfs*3|1|0.16|ENSG00000079432|chr19:42291620-42291620|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	401.69549560546875	2	401.695752	801.376952	-0.73132	-0.00029377	1.0805	0.00043404	0.3492	0.00014027	401.6960309688072	37.205	0.59149	34.495	34.287	34.879	-2.7097					28	11	3	0	0	0	0.74971	1	1656	1656		26.796	5.0938	1	85690			10940	580	8979	8989	11820	11820					-0.031681860307230636
FGGRDPFSFDF	11	Unmodified	_FGGRDPFSFDF_					0	0	0		ENST00000488001.5_1_7:157151266-157161444:+|nuORF;ENST00000526843.2_1_11:127810983-127811547:-|nuORF;nc|ENSG00000105993|O75190-2|DNAJB6;nc|ENSG00000105993|O75190-4|DNAJB6;nc|ENSG00000105993|O75190-3|DNAJB6;ENSG00000105993|ENST00000262177|DNAJB6	ENST00000488001.5_1_7:157151266-157161444:+|nuORF	ENST00000488001.5_1_7:157151266-157161444:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	646.2901611328125	2	646.290745	1290.56694	2.1308	0.0013771	0.5495	0.00035514	2.6803	0.0017323	646.2909866732608	134.27	0.37331	134.27	134.06	134.43	0					14	7	2	0	0	0	0.50761	1	15635	15635		53.089	3.0554	1	232250			10941	2521	8980	8990	11821	11821					-0.06672363879010845
FGGRGRGWN	9	Unmodified	_FGGRGRGWN_					0	0	0			REV__ENST00000400979.2_1_1:166244929-166246012:-|nuORF	REV__ENST00000400979.2_1_1:166244929-166246012:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.2850036621094	2	503.751924	1005.4893	2.0844	0.00105	2.4113	0.0012147	4.4957	0.0022647	503.75312851921007	110.46	0.35929	110.46	110.27	110.63	0					11	7	2	0	0	0	0.027462	1	12529	12529		31.955	1.4512	1	158050	+		10942	25406	8981	8991	11822	11822					-0.013229122338657362
FGGRNPFDTF	10	Unmodified	_FGGRNPFDTF_					0	0	0		DNAJB1-MED26|1|fusion;nc|ENSG00000132002|P25685-2|DNAJB1;DNAJB1|p.D287Rfs*31|1|0.04|ENSG00000132002|chr19:14516105-14516106|-/C|frameshift_variant;ENSG00000132002|ENST00000254322|DNAJB1	DNAJB1-MED26|1|fusion	DNAJB1-MED26|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	579.2755737304688	2	579.272355	1156.53016	-0.091653	-5.3092E-05	0.98384	0.00056991	0.89219	0.00051682	579.2727416599505	105.33	1.8038	105.33	104.96	106.76	0					129	40	6	0	0	0	0.0017528	2	11836	11815;11836		172.25	87.333	1	9220900			10943	751	8982	8992	11823;11824	11824					-0.04184615704934913
FGHVRWDTGR	10	Unmodified	_FGHVRWDTGR_					0	0	0			REV__ENST00000489511.5_1_22:50660905-50663012:-|nuORF	REV__ENST00000489511.5_1_22:50660905-50663012:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	615.4057006835938	2	615.809971	1229.60539	0.83104	0.00051176	-0.08773	-5.4025E-05	0.74331	0.00045774	615.8090667970654	151.42	0.15466	151.42	151.3	151.45	0					4	2	2	0	0	0	0.026803	1	17732	17732		40.058	0	1	16565	+		10944	26641	8983	8993	11825	11825					-0.00023013453846942866
FGIDRPAEL	9	Unmodified	_FGIDRPAEL_					0	0	0		ENST00000589144.5_1_19:19387459-19413207:-|nuORF;ENST00000588731.6_1_19:19387459-19414804:-|nuORF;ENSG00000105705|ENST00000247001|SUGP1;ENST00000592188.1_1_19:19387459-19391209:-|nuORF	ENST00000589144.5_1_19:19387459-19413207:-|nuORF	ENST00000589144.5_1_19:19387459-19413207:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	509.2733459472656	2	509.271824	1016.5291	1.7019	0.00086673	0.22302	0.00011358	1.9249	0.00098031	509.27186324584557	92.195	1.2569	92.195	91.711	92.968	0					74	29	5	0	0	0	0.036986	2	9944	9944;9971		129.42	36.226	1	17636000			10945	2493	8984	8994	11826;11827	11826					0.02149169926178729
FGIHMLGVMIQ	11	Unmodified	_FGIHMLGVMIQ_					0	0	0			REV__ENSG00000071203|ENST00000016913|MS4A12	REV__ENSG00000071203|ENST00000016913|MS4A12	MULTI-SECPEP	OvCa99_classI_Rep5	1	623.2739868164062	2	623.327762	1244.64097	1.1812	0.00073631	3.3095	0.0020629	4.4907	0.0027992	623.3298070315594	119.65	0.62175	119.65	119.33	119.96	0					20	15	2	0	0	0	0.02535	1	13736	13736		27.882	0	1	393570	+		10946	16899	8985	8995	11828	11828					0.02843564687327671
FGILAVITFV	10	Unmodified	_FGILAVITFV_					0	0	0		tr|A0A7D6ZYG3|A0A7D6ZYG3_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16300PE=4SV=1	tr|A0A7D6ZYG3|A0A7D6ZYG3_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16300PE=4SV=1	tr|A0A7D6ZYG3|A0A7D6ZYG3_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16300PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3307495117188	2	540.328611	1078.64267	0.34656	0.00018726	2.5593	0.0013829	2.9059	0.0015701	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.71192	2	13710	13620;13710		29.15	2.4566	1	342200			10947	35917	8986	8996	11829;11830	11830					0.1064926503922834
FGILKRAAA	9	Unmodified	_FGILKRAAA_					0	0	0		ENSG00000091483|ENST00000366560|FH;nc|ENSG00000091483|P07954-2|FH	ENSG00000091483|ENST00000366560|FH	ENSG00000091483|ENST00000366560|FH	MULTI-MSMS	OvCa9_classI_Rep3	3	473.79248046875	2	473.795269	945.575986	-1.4006	-0.0006636	-2.8897	-0.0013691	-4.2903	-0.0020327	473.79377720504266	140.59	1.376	139.55	139.19	140.56	-1.0339					56	27	3	0	0	0	0.65476	1	11588	11588		25.45	3.4903	1	61465			10948	1870	8987	8997	11831	11831					0.10102074267967964
FGILKRAAA	9	Unmodified	_FGILKRAAA_					0	0	0		ENSG00000091483|ENST00000366560|FH;nc|ENSG00000091483|P07954-2|FH	ENSG00000091483|ENST00000366560|FH	ENSG00000091483|ENST00000366560|FH	MULTI-MATCH	OvCa9_classI_Rep2	2		2	473.795269	945.575986	-1.2361	-0.00058568	-3.1861	-0.0015096	-4.4223	-0.0020952	473.7936540906689	140.12	1.274	139.89	139.4	140.68	-0.22696	0.24146	0.00051473	NaN	25.45	50	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41249			10949	1870	8987	8997							0.10102074267967964
FGINMRLKK	9	Unmodified	_FGINMRLKK_					0	0	0		tr|A0A7D6W0A2|A0A7D6W0A2_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_23010PE=4SV=1	tr|A0A7D6W0A2|A0A7D6W0A2_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_23010PE=4SV=1	tr|A0A7D6W0A2|A0A7D6W0A2_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_23010PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8299560546875	2	553.828786	1105.64302	-0.8401	-0.00046527	2.9703	0.001645	2.1302	0.0011798	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.61208	1	14324	14324		30.504	2.4222	1	245610			10950	35374	8988	8998	11832	11832					0.09442361487435846
FGIPPKALFV	10	Unmodified	_FGIPPKALFV_					0	0	0			REV__nc|ENSG00000008226|Q9Y238-2|DLEC1	REV__nc|ENSG00000008226|Q9Y238-2|DLEC1	MULTI-MSMS	OvCa9_classI_Rep2	2	544.823974609375	2	544.828778	1087.643	-4.3629	-0.0023771	-3.365	-0.0018333	-7.7279	-0.0042104	544.82700234604	154.97	0.71278	154.74	154.48	155.19	-0.22696					46	16	4	0	0	0	0.76627	1	15793	15793		23.042	1.0826	1	60082	+		10951	16447	8989	8999	11833	11833					0.10268684759080315
FGKGKIELEI	10	Unmodified	_FGKGKIELEI_					0	0	0			REV__tr|A0A7D7A1B3|A0A7D7A1B3_9CLOTSpoIIIAH-likefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14500PE=4SV=1	REV__tr|A0A7D7A1B3|A0A7D7A1B3_9CLOTSpoIIIAH-likefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14500PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3301391601562	2	567.331882	1132.64921	-3.474	-0.0019709	-0.21845	-0.00012393	-3.6925	-0.0020949	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.66721	1	12092	12092		34.173	1.3601	1	458690	+		10952	32482	8990	9000	11834	11834					0.08819158199935373
FGKKKEKLE	9	Unmodified	_FGKKKEKLE_					0	0	0			REV__tr|A0A7D6VTZ6|A0A7D6VTZ6_9CLOTprotein-tyrosine-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_18805PE=3SV=1	REV__tr|A0A7D6VTZ6|A0A7D6VTZ6_9CLOTprotein-tyrosine-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_18805PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8292846679688	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.5811	1	11933	11933		34.173	9.6534	1	308210	+		10953	31640	8991	9001	11835	11835					0.10094577919812764
FGKKKGALKNM	11	Unmodified	_FGKKKGALKNM_					0	0	0			REV__GBP1|p.P417Ifs*3|1|0.05|ENSG00000117228|chr1:89056135-89056136|-/AT|frameshift_variant	REV__GBP1|p.P417Ifs*3|1|0.05|ENSG00000117228|chr1:89056135-89056136|-/AT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	611.35498046875	2	611.36045	1220.70635	-3.7398	-0.0022864	-3.3731	-0.0020622	-7.1129	-0.0043485	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.69081	1	15268	15268		32.812	4.9302	1	331570	+		10954	18344	8992	9002	11836	11836					0.10482302204650296
FGLAKHVVRP	10	Unmodified	_FGLAKHVVRP_					0	0	0		nc|ENSG00000163673|Q9C098|DCLK3;ENSG00000163673|ENST00000636136|DCLK3	nc|ENSG00000163673|Q9C098|DCLK3	nc|ENSG00000163673|Q9C098|DCLK3	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.343994140625	2	562.340375	1122.6662	1.2434	0.00069921	4.1981	0.0023608	5.4415	0.00306	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.71192	1	14175	14175		29.15	3.5755	1	683710			10955	6344	8993	9003	11837	11837					0.10977123596398997
FGLAPAYPL	9	Unmodified	_FGLAPAYPL_					0	0	0		nc|ENSG00000167548|O14686-3|KMT2D;ENSG00000167548|ENST00000301067|KMT2D	nc|ENSG00000167548|O14686-3|KMT2D	nc|ENSG00000167548|O14686-3|KMT2D	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.5769958496094	2	474.763104	947.511654	-0.46383	-0.00022021	-0.050332	-2.3896E-05	-0.51416	-0.0002441	474.76291235917637	77.604	2.2712	75.815	74.582	76.854	-1.7894					100	43	4	0	0	0	0.02744	1	6527	6527		39.021	1.993	1	269350			10956	6802	8994	9004	11838	11838					0.035798743911641395
FGLAPAYPL	9	Unmodified	_FGLAPAYPL_					0	0	0		nc|ENSG00000167548|O14686-3|KMT2D;ENSG00000167548|ENST00000301067|KMT2D	nc|ENSG00000167548|O14686-3|KMT2D	nc|ENSG00000167548|O14686-3|KMT2D	MULTI-MATCH	OvCa9_classI_Rep3	3		2	474.763104	947.511654	0.12339	5.8583E-05	-0.78856	-0.00037438	-0.66517	-0.0003158	474.76258169590847	77.777	1.2544	75.424	75.1	76.354	-2.3527	-0.22848	5.2792E-05	NaN	21.702	56	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	495840			10957	6802	8994	9004							0.035798743911641395
FGLAVFSILL	10	Unmodified	_FGLAVFSILL_					0	0	0		tr|A0A553SGL0|A0A553SGL0_NIACIMulti-TM2domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11070PE=4SV=1	tr|A0A553SGL0|A0A553SGL0_NIACIMulti-TM2domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11070PE=4SV=1	tr|A0A553SGL0|A0A553SGL0_NIACIMulti-TM2domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11070PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3304443359375	2	540.328611	1078.64267	-1.2676	-0.00068491	4.0333	0.0021793	2.7657	0.0014944	540.3307152267141	139.22	4.0818	138.16	137	141.08	-1.0595					200	82	3	0	0	0	0.56767	1	11343	11343		45.952	5.1738	1	55828			10958	33169	8995	9005	11839	11839					0.1064926503922834
FGLLCHKFLAR	11	Unmodified	_FGLLCHKFLAR_					0	0	0		E2F8|p.L118F|1|0.04|ENSG00000129173|chr11:19237411-19237411|T/G|missense_variant	E2F8|p.L118F|1|0.04|ENSG00000129173|chr11:19237411-19237411|T/G|missense_variant	E2F8|p.L118F|1|0.04|ENSG00000129173|chr11:19237411-19237411|T/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	435.5772705078125	3	435.581387	1303.72233	-5.5119	-0.0024009	-2.71	-0.0011804	-8.2218	-0.0035813	435.58000137007264	156.23	0.81717	155.16	154.88	155.7	-1.073					40	18	3	0	0	0	0.72507	1	13447	13447		14.694	0.60766	1	35697			10959	774	8996	9006	11840	11840					0.08262008441579383
FGLLHRRP	8	Unmodified	_FGLLHRRP_					0	0	0			REV__nc|ENSG00000213676|Q99941-2|ATF6B	REV__nc|ENSG00000213676|Q99941-2|ATF6B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.84271240234375	2	498.29851	994.582468	-1.2316	-0.00061368	3.0225	0.0015061	1.791	0.00089243	498.30002214108475	100.65	0.80754	98.384	98.03	98.838	-2.2665					29	15	3	0	0	0	0.028476	1	8976	8976		28.254	0	1	34952	+		10960	23266	8997	9007	11841	11841					0.08496012219370641
FGLNVRGFL	9	Unmodified	_FGLNVRGFL_					0	0	0		RFC2-LIMK1|1|fusion;nc|ENSG00000106683|P53667-4|LIMK1;nc|ENSG00000106683|P53667-2|LIMK1;ENSG00000106683|ENST00000336180|LIMK1	RFC2-LIMK1|1|fusion	RFC2-LIMK1|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.2789916992188	2	511.792727	1021.5709	0.24772	0.00012678	-1.7359	-0.00088843	-1.4882	-0.00076165	511.7918143967718	113.21	0.54449	111.76	111.51	112.05	-1.4461					22	10	3	0	0	0	0.027462	1	10491	10491		42.474	24.15	1	38847			10961	2571	8998	9008	11842	11842					0.06097770405369829
FGLSEVKSVVI	11	Unmodified	_FGLSEVKSVVI_					0	0	0		nc|ENSG00000137672|Q9Y210-2|TRPC6;nc|ENSG00000137672|Q9Y210-3|TRPC6;ENSG00000137672|ENST00000344327|TRPC6	nc|ENSG00000137672|Q9Y210-2|TRPC6	nc|ENSG00000137672|Q9Y210-2|TRPC6	MULTI-MSMS	OvCa9_classI_Rep3	3	589.341796875	2	589.344989	1176.67542	-5.1334	-0.0030254	1.6192	0.00095427	-3.5142	-0.0020711	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.71789	1	12624	12624		23.523	2.6855	1	589610			10962	4605	8999	9009	11843	11843					0.09415427371436635
FGMKWLLVAL	10	Unmodified	_FGMKWLLVAL_					0	0	0			REV__ENSG00000144668|ENST00000264741|ITGA9	REV__ENSG00000144668|ENST00000264741|ITGA9	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3416748046875	2	589.343738	1176.67292	-2.3488	-0.0013843	0.93306	0.00054989	-1.4158	-0.00083439	589.3441165076871	144.49	4.0102	144.26	142.11	146.12	-0.22696					206	80	3	0	0	0	0.81992	1	14520	14520		16.473	0	1	105920	+		10963	19926	9000	9010	11844	11844					0.09165300432778167
FGMLIVPES	9	Unmodified	_FGMLIVPES_					0	0	0		tr|A0A553SFA3|A0A553SFA3_NIACISugarporterfamilyMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_08500PE=3SV=1	tr|A0A553SFA3|A0A553SFA3_NIACISugarporterfamilyMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_08500PE=3SV=1	tr|A0A553SFA3|A0A553SFA3_NIACISugarporterfamilyMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_08500PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.811767578125	2	496.759704	991.504854	-0.6383	-0.00031708	3.0363	0.0015083	2.398	0.0011912	496.7620382210165	117.55	0.312	116.21	115.95	116.26	-1.3444					7	5	2	0	0	0	0.027462	1	10995	10995		12.959	1.4482	1	6624.1			10964	33012	9001	9011	11845	11845					0.008761934483004552
FGNKVNPLL	9	Unmodified	_FGNKVNPLL_					0	0	0		nc|ENSG00000184465|A2RRH5-2|WDR27;nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27;nc|ENSG00000184465|A2RRH5-3|WDR27;ENST00000546953.1_1_6:170072345-170089107:-|nuORF	nc|ENSG00000184465|A2RRH5-2|WDR27	nc|ENSG00000184465|A2RRH5-2|WDR27	MULTI-MSMS	OvCa9_classI_Rep3	3	501.28948974609375	2	501.292559	1000.57057	-1.4695	-0.00073667	-2.6975	-0.0013522	-4.167	-0.0020889	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.58665	1	11216	11216		33.516	1.5607	1	97838			10965	8161	9002	9012	11846	11846					0.07030350685522535
FGNTEESEAT	10	Unmodified	_FGNTEESEAT_					0	0	0			REV__tr|A0A553SFH8|A0A553SFH8_NIACIDNA3'-5'helicaseOS=NialliacirculansOX=1397GN=CEQ21_08910PE=3SV=1	REV__tr|A0A553SFH8|A0A553SFH8_NIACIDNA3'-5'helicaseOS=NialliacirculansOX=1397GN=CEQ21_08910PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.78515625	2	542.725101	1083.43565	-0.38974	-0.00021152	4.2533	0.0023084	3.8636	0.0020969	542.7272750213476	90.412	1.1689	88.331	88.056	89.225	-2.0805					49	22	4	0	0	0	0.026551	1	5687	5687		60.118	7.1816	1	165410	+		10966	29580	9003	9013	11847	11847					-0.10273219037571835
FGPIILPIYT	10	Unmodified	_FGPIILPIYT_					0	0	0			REV__nc|ENSG00000100320|O43251-3|RBFOX2	REV__nc|ENSG00000100320|O43251-3|RBFOX2	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3297729492188	2	567.333893	1132.65323	-3.474	-0.0019709	-3.7638	-0.0021353	-7.2378	-0.0041062	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.62668	1	12271	12271		38.806	14.287	1	458690	+		10967	17399	9004	9014	11848	11848					0.0922124769367656
FGPNTITMPE	10	Unmodified	_FGPNTITMPE_					0	0	0		tr|A0A553SRV5|A0A553SRV5_NIACIPhytoenedesaturaseOS=NialliacirculansOX=1397GN=crtIPE=3SV=1	tr|A0A553SRV5|A0A553SRV5_NIACIPhytoenedesaturaseOS=NialliacirculansOX=1397GN=crtIPE=3SV=1	tr|A0A553SRV5|A0A553SRV5_NIACIPhytoenedesaturaseOS=NialliacirculansOX=1397GN=crtIPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	553.2977294921875	2	553.762975	1105.5114	0.42262	0.00023403	-3.4808	-0.0019275	-3.0582	-0.0016935	553.7608989506018	122.44	0.39541	122.23	122.02	122.41	-0.21803					13	7	2	0	0	0	0.026994	1	11867	11867		32.812	1.2826	1	15409			10968	34303	9005	9015	11849	11849					-0.03713913390970447
FGPPPPQLSGL	11	Unmodified	_FGPPPPQLSGL_					0	0	0			REV__nc|ENSG00000111641|P46087-4|NOP2;REV__chr11:62717189-62718568|110|28.06|0.0|21.42|-|1|TE_info:AluSx1,AluSx1_dup70421,Alu,SINE,donor,+,62718568,62718713|HNRNPUL2-BSCL2,None|2;REV__ENST00000561302.5_1_15:76430142-76521275:+|nuORF;REV__nc|ENSG00000081026|Q5TCQ9-2|MAGI3;REV__nc|ENSG00000109618|Q9HD40-3|SEPSECS;REV__nc|ENSG00000240344|Q9H2H8-2|PPIL3	REV__nc|ENSG00000111641|P46087-4|NOP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.8281860351562	2	555.303124	1108.5917	-0.64299	-0.00035705	3.4389	0.0019096	2.7959	0.0015526	555.3051114885488	59.463	0.27108	59.463	59.34	59.611	0					11	6	2	0	0	0	0.025701	1	5134	5134		29.17	0	1	234010	+		10969	28796;29155;15864;27633;28741;28791	9006	9016	11850	11850					0.04174315994373501
FGPSSLPVEL	10	Unmodified	_FGPSSLPVEL_					0	0	0			REV__nc|ENSG00000174227|Q5H8A4-3|PIGG;REV__ENST00000506402.5_1_4:514890-515999:+|nuORF	REV__nc|ENSG00000174227|Q5H8A4-3|PIGG	MULTI-MSMS	OvCa99_classI_Rep5	1	523.27978515625	2	523.281857	1044.54916	-0.5262	-0.00027535	-3.7118	-0.0019423	-4.238	-0.0022177	523.2797624265734	30.458	0.29682	30.458	30.285	30.582	0					14	5	3	0	0	0	0.66721	1	1171	1171		34.173	5.023	1	167930	+		10970	21817;26886	9007	9017	11851	11851					0.028669208661540324
FGQSIRVIV	9	Unmodified	_FGQSIRVIV_					0	0	0			REV__nc|ENSG00000074803|Q13621-3|SLC12A1	REV__nc|ENSG00000074803|Q13621-3|SLC12A1	MULTI-MSMS	OvCa9_classI_Rep3	3	509.80474853515625	2	509.805834	1017.59712	1.7031	0.00086826	-2.332	-0.0011889	-0.62886	-0.00032059	509.8046299729127	112.22	1.4743	111.12	110.75	112.22	-1.1038					89	29	4	0	0	0	0.33652	1	8257	8257		58.782	5.8453	1	1564800	+		10971	16955	9008	9018	11852	11852					0.08902039576855714
FGQVVVRAGV	10	Unmodified	_FGQVVVRAGV_					0	0	0			REV__tr|A0A553SL44|A0A553SL44_NIACIGlutamatedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_19955PE=3SV=1	REV__tr|A0A553SL44|A0A553SL44_NIACIGlutamatedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_19955PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.3032836914062	2	516.303458	1030.59236	-0.62044	-0.00032034	-0.28232	-0.00014576	-0.90276	-0.0004661	516.303207209785	62.857	2.0837	59.399	58.962	61.046	-3.4577					108	42	4	0	0	0	0.58282	1	4426	4426		44.117	3.5442	1	1463100	+		10972	30184	9009	9019	11853	11853					0.07829155434069435
FGRPRLAL	8	Unmodified	_FGRPRLAL_					0	0	0		SPG7|p.L543Hfs*33|1|0.32|ENSG00000197912|chr16:89548077-89548078|-/A|frameshift_variant;ENSG00000197912|ENST00000645818|SPG7;nc|ENSG00000197912|Q9UQ90-2|SPG7;ENST00000564047.1_1_16:89590622-89596095:+|nuORF	SPG7|p.L543Hfs*33|1|0.32|ENSG00000197912|chr16:89548077-89548078|-/A|frameshift_variant	SPG7|p.L543Hfs*33|1|0.32|ENSG00000197912|chr16:89548077-89548078|-/A|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.2647399902344	2	465.287611	928.56067	-1.0825	-0.00050366	-1.0417	-0.00048467	-2.1241	-0.00098833	465.28700502647536	95.271	1.3517	92.802	91.91	93.262	-2.4685					57	26	3	0	0	0	0.028476	1	8396	8396		54.765	17.736	1	138060			10973	8762	9010	9020	11854	11854					0.09353207470792313
FGRRAPLL	8	Unmodified	_FGRRAPLL_					0	0	0			REV__ENST00000541682.6_1_17:8024850-8025051:-|nuORF	REV__ENST00000541682.6_1_17:8024850-8025051:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	465.26483154296875	2	465.287611	928.56067	-0.72542	-0.00033753	-1.2718	-0.00059174	-1.9972	-0.00092927	465.2867767648095	94.572	1.4662	92.677	91.744	93.211	-1.8956					59	28	3	0	0	0	0.028476	1	6173	6173		29.842	0	1	132240	+		10974	27374	9011	9021	11855	11855					0.09353207470792313
FGRSKIFIR	9	Unmodified	_FGRSKIFIR_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3438110351562	2	562.340375	1122.6662	1.2434	0.00069921	4.1981	0.0023608	5.4415	0.00306	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.63422	1	14092	14092		27.882	4.8398	1	683710			10975	3897	9012	9022	11856	11856					0.10977123596398997
FGSLRFIVPP	10	Unmodified	_FGSLRFIVPP_					0	0	0			REV__DNAH2|p.W4278R|1|0.07|ENSG00000183914|chr17:7832684-7832684|T/C|missense_variant	REV__DNAH2|p.W4278R|1|0.07|ENSG00000183914|chr17:7832684-7832684|T/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.3004150390625	2	566.829309	1131.64407	2.2912	0.0012987	-0.2648	-0.0001501	2.0264	0.0011486	566.8288862941191	136.87	0.81731	136.87	136.58	137.4	0					34	16	3	0	0	0	0.026849	1	16005	16005		40.778	21.675	1	158960	+		10976	16313	9013	9023	11857	11857					0.08350899127958655
FGSSAIAAGAI	11	Unmodified	_FGSSAIAAGAI_					0	0	0			REV__tr|A0A553SG01|A0A553SG01_NIACIInorganicphosphatetransporterOS=NialliacirculansOX=1397GN=CEQ21_09820PE=4SV=1	REV__tr|A0A553SG01|A0A553SG01_NIACIInorganicphosphatetransporterOS=NialliacirculansOX=1397GN=CEQ21_09820PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	482.759521484375	2	482.758549	963.502546	2.1392	0.0010327	1.1547	0.00055742	3.2938	0.0015901	482.7588804234167	57.803	3.1186	54.676	53.456	56.575	-3.1264					158	85	3	0	0	0	0.69081	1	1801	1801		32.812	1.2826	1	89902	+		10977	29642	9014	9024	11858	11858					0.01933481034848228
FGVHPKNI	8	Unmodified	_FGVHPKNI_					0	0	0		KCNH7|p.Q1048Pfs*5|1|0.11|ENSG00000184611|chr2:162373653-162373654|-/T|frameshift_variant;KCNH7|p.E1094Kfs*31|1|0.18|ENSG00000184611|chr2:162373514-162373515|-/AGAAGCAGGATAAAGGACTCTTTAAATTGCTT|frameshift_variant;ENSG00000184611|ENST00000332142|KCNH7;nc|ENSG00000184611|Q9NS40-2|KCNH7	KCNH7|p.Q1048Pfs*5|1|0.11|ENSG00000184611|chr2:162373653-162373654|-/T|frameshift_variant	KCNH7|p.Q1048Pfs*5|1|0.11|ENSG00000184611|chr2:162373653-162373654|-/T|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.2419128417969	2	456.25852	910.502486	-0.41681	-0.00019017	-0.18709	-8.5361E-05	-0.6039	-0.00027553	456.258371471906	65.447	0.51717	65.447	65.231	65.748	0					23	12	2	0	0	0	0.028476	1	6041	6041		42.474	10.52	1	874750			10978	8175	9015	9025	11859	11859					0.04365525825505756
FGVITLVVVFA	11	Unmodified	_FGVITLVVVFA_					0	0	0			REV__tr|A0A7D6ZZX0|A0A7D6ZZX0_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_21880PE=3SV=1	REV__tr|A0A7D6ZZX0|A0A7D6ZZX0_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_21880PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.3587646484375	2	582.854993	1163.69543	1.8339	0.0010689	0.7901	0.00046051	2.624	0.0015294	582.8555211841227	120.52	0.2489	120.52	120.36	120.61	0					7	5	2	0	0	0	0.026056	1	13853	13853		14.865	0	1	217260	+		10979	32427	9016	9026	11860	11860					0.12013223102030679
FGVPLARNQ	9	Unmodified	_FGVPLARNQ_					0	0	0		ENST00000421816.6_1_19:13002118-13008243:+|nuORF;ENST00000591043.1_1_19:13002118-13008243:+|nuORF;ENST00000590530.5_1_19:13002704-13010352:+|nuORF;GCDH|p.N373Kfs*28|1|0.25|ENSG00000105607|chr19:12897739-12897739|T/-|frameshift_variant;nc|ENSG00000105607|Q92947-2|GCDH;ENSG00000105607|ENST00000222214|GCDH	ENST00000421816.6_1_19:13002118-13008243:+|nuORF	ENST00000421816.6_1_19:13002118-13008243:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.3370666503906	2	501.279983	1000.54541	-0.82864	-0.00041538	-1.9706	-0.00098783	-2.7993	-0.0014032	501.278699358149	34.969	0.65692	34.969	34.818	35.475	0					23	13	3	0	0	0	0.027462	1	1768	1768		40.573	5.3719	1	174660			10980	2472	9017	9027	11861	11861					0.045162958829337185
FGVSNKRRK	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))FGVSNKRRK_					1	0	0			REV__ENST00000272645.8_1_2:128603902-128603953:-|nuORF	REV__ENST00000272645.8_1_2:128603902-128603953:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	567.32861328125	2	567.330539	1132.64652	-3.474	-0.0019709	2.1482	0.0012187	-1.3258	-0.00075219	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.38529	1	12317	12317		53.351	14.545	1	458690	+		10981	24079	9018	9028	11862	11862					0.0855074758567298
FGYLIMVQ	8	Unmodified	_FGYLIMVQ_					0	0	0			REV__ENST00000413077.1_1_17:5015331-5017504:+|nuORF	REV__ENST00000413077.1_1_17:5015331-5017504:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	485.7768859863281	2	485.756964	969.499375	-0.56645	-0.00027516	-4.4612	-0.002167	-5.0276	-0.0024422	485.75492499838157	47.757	0.44506	45.047	44.836	45.281	-2.7097					12	8	2	0	0	0	0.028476	1	2904	2904		29.842	18.331	1	12346	+		10982	25504	9019	9029	11863	11863					0.01340514656499181
FGYQKEALLN	10	Unmodified	_FGYQKEALLN_					0	0	0			REV__CON__P12763;REV__ENSG00000145192|ENST00000411641|AHSG	REV__CON__P12763	MULTI-MSMS	OvCa99_classI_Rep5	1	591.8125	2	591.811313	1181.60807	-0.48123	-0.0002848	1.5886	0.00094016	1.1074	0.00065536	591.8123289447782	69.627	1.0174	69.627	69.268	70.286	0					81	24	5	0	0	0	0.58067	1	6655	6655		44.377	0.7264	1	4849800	+	+	10983	16193;19953	9020	9030	11864	11864					0.024533971604796534
FGYSRHTPF	9	Unmodified	_FGYSRHTPF_					0	0	0		ENST00000398073.6_1_12:58216891-58217005:-|nuORF	ENST00000398073.6_1_12:58216891-58217005:-|nuORF	ENST00000398073.6_1_12:58216891-58217005:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	556.2716674804688	2	556.269616	1110.52468	0.88157	0.00049039	-1.969	-0.0010953	-1.0874	-0.00060488	556.2684062590879	66.878	1.3048	66.878	66.575	67.88	0					66	32	4	0	0	0	0.029147	2	6211	6211;6245		136.27	63.389	1	7266000			10984	11365	9021	9031	11865;11866	11865					-0.026162944967154544
FHAVQKLII	9	Unmodified	_FHAVQKLII_					0	0	0			REV__ENSG00000187240|ENST00000375735|DYNC2H1	REV__ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MSMS	OvCa99_classI_Rep5	1	534.8302001953125	2	534.831852	1067.64915	0.8365	0.00044739	-4.2495	-0.0022728	-3.413	-0.0018254	534.8296413644109	103.24	2.3818	103.24	102.98	105.36	0					213	55	5	0	0	0	0.25214	1	11514	11514		68.485	2.6815	1	60018000	+		10985	22636	9022	9032	11867	11867					0.11803202990608952
FHAYIRKLTGG	11	Unmodified	_FHAYIRKLTGG_					0	0	0		ENSG00000182446|ENST00000331134|NPLOC4;nc|ENSG00000182446|Q8TAT6-2|NPLOC4	ENSG00000182446|ENST00000331134|NPLOC4	ENSG00000182446|ENST00000331134|NPLOC4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	631.830078125	2	631.853847	1261.69314	1.2216	0.00077185	-3.6497	-0.0023061	-2.4282	-0.0015342	631.8514999279587	97.258	0.4537	94.874	94.606	95.059	-2.3838					15	8	3	0	0	0	0.025257	1	8595	8595		62.107	7.3851	1	17454			10986	7999	9023	9033	11868	11868					0.07276187416937319
FHDNDKTRI	9	Unmodified	_FHDNDKTRI_					0	0	0			REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MSMS	OvCa9_classI_Rep2	2	573.2860717773438	2	573.288537	1144.56252	-2.583	-0.0014808	-1.1125	-0.00063778	-3.6955	-0.0021186	573.2878155681369	34.545	1.0883	31.835	31.612	32.701	-2.7097					58	21	5	0	0	0	0.53483	1	1355	1355		39.253	3.6345	1	313120	+		10987	22973	9024	9034	11869	11869					-0.003978283019250739
FHEKFTSLF	9	Unmodified	_FHEKFTSLF_					0	0	0			REV__ENSG00000121797|ENST00000399036|CCRL2	REV__ENSG00000121797|ENST00000399036|CCRL2	MULTI-MSMS	OvCa9_classI_Rep3	3	578.289306640625	2	578.295299	1154.57605	-7.6021	-0.0043963	-2.1936	-0.0012685	-9.7957	-0.0056648	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.61208	1	14192	14192		30.504	1.3541	1	1429200	+		10988	18558	9025	9035	11870	11870					0.004940294773405185
FHFPLLVR	8	Unmodified	_FHFPLLVR_					0	0	0			REV__nc|ENSG00000130775|Q5TEJ8-6|THEMIS2	REV__nc|ENSG00000130775|Q5TEJ8-6|THEMIS2	MULTI-SECPEP	OvCa9_classI_Rep3	3	514.2425537109375	2	514.805637	1027.59672	-0.63321	-0.00032598	-1.6987	-0.00087449	-2.3319	-0.0012005	515.3044651898283	85.55	0.35168	83.329	83.084	83.436	-2.2204					9	6	2	0	0	0	0.028476	1	5030	5030		13.775	0.81615	1	18736	+		10989	18970	9026	9036	11871	11871					0.08402664647655911
FHGAGLKRYLL	11	Unmodified	_FHGAGLKRYLL_					0	0	0		ENSG00000158859|ENST00000367996|ADAMTS4;nc|ENSG00000158859|O75173-2|ADAMTS4	ENSG00000158859|ENST00000367996|ADAMTS4	ENSG00000158859|ENST00000367996|ADAMTS4	MULTI-SECPEP	OvCa9_classI_Rep2	2	425.56341552734375	3	425.583785	1273.72953	-0.51686	-0.00021997	0.93394	0.00039747	0.41707	0.0001775	425.58273024903247	69.583	0.54756	66.962	66.665	67.213	-2.6203					13	10	2	0	0	0	0.025681	1	5526	5526		12.957	0	1	6079.6			10990	5976	9027	9037	11872	11872					0.1036106431367898
FHGSLAFTYL	10	Unmodified	_FHGSLAFTYL_					0	0	0		ENSG00000162881|ENST00000378661|OXER1	ENSG00000162881|ENST00000378661|OXER1	ENSG00000162881|ENST00000378661|OXER1	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2877197265625	2	578.295299	1154.57605	-7.6021	-0.0043963	-2.1936	-0.0012685	-9.7957	-0.0056648	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.76627	1	13640	13640		23.042	3.0457	1	1429200			10991	6243	9028	9038	11873	11873					0.004940294773405185
FHIGLEELLP	10	Unmodified	_FHIGLEELLP_					0	0	0			REV__nc|ENSG00000177752|Q8N8F6-5|YIPF7	REV__nc|ENSG00000177752|Q8N8F6-5|YIPF7	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.7539672851562	2	584.324057	1166.63356	0.99041	0.00057872	1.3905	0.00081251	2.3809	0.0013912	584.3246588963018	144.49	0.97641	144.49	144.11	145.08	0					43	19	3	0	0	0	0.026956	1	16963	16963		42.396	7.1954	1	236210	+		10992	22026	9029	9039	11874	11874					0.056908716829184414
FHISRLFYF	9	Unmodified	_FHISRLFYF_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	OvCa99_classI_Rep5	1	615.329833984375	2	615.326934	1228.63931	2.2628	0.0013923	-0.17984	-0.00011066	2.0829	0.0012817	615.326570882679	121.87	1.017	121.87	121.57	122.58	0					54	21	4	0	0	0	0.3076	1	14025	14025		62.107	3.8775	1	556060			10993	1368	9030	9040	11875	11875					0.034140149852191826
FHIVRARVALP	11	Unmodified	_FHIVRARVALP_					0	0	0			REV__ENSG00000162927|ENST00000316752|PUS10	REV__ENSG00000162927|ENST00000316752|PUS10	MULTI-MSMS	OvCa9_classI_Rep3	3	426.929443359375	3	426.931296	1277.77206	1.9726	0.00084218	-3.0772	-0.0013137	-1.1046	-0.00047157	426.9298641751681	63.826	0.84409	60.832	60.551	61.395	-2.9933					25	16	2	0	0	0	0.72472	1	2425	2425		19.263	2.5453	1	25543	+		10994	20792	9031	9041	11876	11876					0.14428459441887753
FHKAIRRNP	9	Unmodified	_FHKAIRRNP_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;ENST00000490223.1_1_3:23959920-23960989:+|nuORF;ENST00000436146.1_1_3:23959450-23960989:+|nuORF;ENST00000475768.1_1_11:115821075-115821177:-|nuORF	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.3603515625	2	569.833249	1137.65194	1.0057	0.00057309	-1.8885	-0.0010761	-0.88279	-0.00050305	569.8323180389253	156.63	1.0539	156.63	156.29	157.35	0					28	20	2	0	0	0	0.027462	1	18428	18428		27.882	8.7787	1	47124			10995	7488	9032	9042	11877	11877					0.08862471168140473
FHKKLSLL	8	Unmodified	_FHKKLSLL_					0	0	0		ENSG00000111913|ENST00000643898|RIPOR2;nc|ENSG00000111913|Q9Y4F9|RIPOR2	ENSG00000111913|ENST00000643898|RIPOR2	ENSG00000111913|ENST00000643898|RIPOR2	MULTI-MSMS	OvCa99_classI_Rep5	1	493.31109619140625	2	493.313295	984.612037	-0.093607	-4.6178E-05	-4.3204	-0.0021313	-4.414	-0.0021775	493.3110238007721	32.31	0.74081	32.31	32.055	32.796	0					33	14	4	0	0	0	0.53531	1	1393	1393		73.975	8.1716	1	473230			10996	2868	9033	9043	11878	11878					0.11911531444866341
FHKLILRRYEK	11	Unmodified	_FHKLILRRYEK_					0	0	0		nc|ENSG00000182903|Q8TF20|ZNF721;ENSG00000182903|ENST00000511833|ZNF721;ENSG00000131127|ENST00000240499|ZNF141;ENSG00000186777|ENST00000419098|ZNF732	nc|ENSG00000182903|Q8TF20|ZNF721	nc|ENSG00000182903|Q8TF20|ZNF721	MULTI-MSMS	OvCa9_classI_Rep2	2	501.6342468261719	3	501.636661	1501.88815	-5.5139	-0.002766	0.35993	0.00018055	-5.154	-0.0025854	501.63686894791874	162.29	1.9089	162.06	160.59	162.5	-0.22696					90	37	3	0	0	0	0.72524	1	16509	16509		12.433	2.3289	1	106580			10997	8038	9034	9044	11879	11879					0.15728358221940653
FHKLILRRYEK	11	Unmodified	_FHKLILRRYEK_					0	0	0		nc|ENSG00000182903|Q8TF20|ZNF721;ENSG00000182903|ENST00000511833|ZNF721;ENSG00000131127|ENST00000240499|ZNF141;ENSG00000186777|ENST00000419098|ZNF732	nc|ENSG00000182903|Q8TF20|ZNF721	nc|ENSG00000182903|Q8TF20|ZNF721	MULTI-MSMS	OvCa9_classI_Rep3	3	501.6340026855469	3	501.636661	1501.88815	-7.1576	-0.0035905	1.9793	0.00099288	-5.1783	-0.0025976	501.63774554440306	163.54	2.3462	162.14	160.37	162.72	-1.3925					135	52	3	0	0	0	0.72575	1	14191	14191		5.6988	2.2901	1	91935			10998	8038	9034	9044	11880	11880					0.15728358221940653
FHLCEDGAEP	10	Unmodified	_FHLCEDGAEP_					0	0	0		ENSG00000162951|ENST00000295057|LRRTM1;chr2:80303878-80304148|392|35.61|0.37|6.6|-|ENST00000409148|LRRTM1,LRRTM1;chr2:80299690-80301945|360|29.4|0.48|5.94|-|ENST00000433224|LRRTM1,LRRTM1;chr2:80289195-80301945|313|16.77|0.57|4.87|-|ENST00000417012|LRRTM1,LRRTM1	ENSG00000162951|ENST00000295057|LRRTM1	ENSG00000162951|ENST00000295057|LRRTM1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	558.2401733398438	2	559.234581	1116.45461	3.1375	0.0017546	0.51951	0.00029053	3.657	0.0020451	559.7368431028143	130.19	0.4456	128.71	128.41	128.86	-1.4779					14	8	2	0	0	0	0.026915	1	12474	12474		35.618	12.096	1	8724.6			10999	448	9035	9045	11881	11881					-0.09895960947505955
FHNFPSIV	8	Unmodified	_FHNFPSIV_					0	0	0		nc|ENSG00000213347|Q9BW11-4|MXD3	nc|ENSG00000213347|Q9BW11-4|MXD3	nc|ENSG00000213347|Q9BW11-4|MXD3	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.75152587890625	2	480.750527	959.486502	-2.0604	-0.00099055	0.58816	0.00028276	-1.4723	-0.00070779	480.7508123397447	49.386	2.9185	46.245	45.99	48.908	-3.1416					151	56	4	0	0	0	0.67745	1	2768	2768		47.916	0	1	3063100			11000	15305	9036	9046	11882	11882					0.005138195886274843
FHPFLLLPL	9	Unmodified	_FHPFLLLPL_					0	0	0			REV__ENST00000299980.8_2_16:71766487-71766874:-|nuORF	REV__ENST00000299980.8_2_16:71766487-71766874:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	549.2915649414062	2	548.83132	1095.64809	-0.77389	-0.00042473	-3.3722	-0.0018508	-4.1461	-0.0022755	548.8280909859753	68.514	0.59512	65.894	65.671	66.266	-2.6203					14	11	2	0	0	0	0.027462	1	5443	5443		29.842	13.368	1	14857	+		11001	24227	9037	9047	11883	11883					0.1040898862170252
FHPGLISRL	9	Unmodified	_FHPGLISRL_					0	0	0		sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1;sp|P16784|ITP_HCMVAInnertegumentproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL47PE=1SV=2	sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1	sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	520.3049926757812	2	520.306001	1038.59745	-4.8818	-0.0025401	3.3819	0.0017596	-1.4999	-0.0007804	520.3076056055337	152.59	1.7718	151.62	150.74	152.51	-0.97301					83	35	4	0	0	0	0.46377	1	13038	13038		45.952	13.997	1	460690			11002	32898	9038	9048	11884	11884					0.07969459296691639
FHPVVGPLII	10	Unmodified	_FHPVVGPLII_					0	0	0			REV__tr|A0A553STZ4|A0A553STZ4_NIACIAscorbate-specificPTSsystemEIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_06025PE=3SV=1	REV__tr|A0A553STZ4|A0A553STZ4_NIACIAscorbate-specificPTSsystemEIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_06025PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.7875366210938	2	546.334227	1090.6539	0.73259	0.00040024	1.5544	0.00084922	2.287	0.0012495	546.3347303180819	158.12	1.0362	158.12	157.85	158.89	0					44	21	3	0	0	0	0.027007	1	18548	18548		35.201	10.998	1	135570	+		11003	31027	9039	9049	11885	11885					0.11220087133369816
FHQDSYPFDG	10	Unmodified	_FHQDSYPFDG_					0	0	0		ENST00000570755.1_1_16:3097544-3105874:+|nuORF;ENSG00000008516|ENST00000336577|MMP25	ENST00000570755.1_1_16:3097544-3105874:+|nuORF	ENST00000570755.1_1_16:3097544-3105874:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	606.8637084960938	2	606.751453	1211.48835	-0.18475	-0.0001121	-2.0664	-0.0012538	-2.2511	-0.0013659	606.74973522774	54.291	0.41608	54.291	54.048	54.464	0					20	9	3	0	0	0	0.027115	1	4340	4340		4.9057	0	1	663750			11004	922	9040	9050	11886	11886					-0.10893216184103949
FHQGPPPAQPL	11	Unmodified	_FHQGPPPAQPL_					0	0	0		ENST00000576487.5_1_17:7011095-7018009:-|nuORF;nc|ENSG00000161944|P07307-3|ASGR2;nc|ENSG00000161944|P07307-2|ASGR2	ENST00000576487.5_1_17:7011095-7018009:-|nuORF	ENST00000576487.5_1_17:7011095-7018009:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	594.8112182617188	2	594.811648	1187.60874	-0.82464	-0.00049051	0.18121	0.00010778	-0.64344	-0.00038272	594.8116926520327	32.231	1.1871	29.521	29.184	30.371	-2.7097					33	23	2	0	0	0	0.70865	1	1051	1051		26.693	2.1737	1	62017			11005	13948	9041	9051	11887	11887					0.022442366001769187
FHQGPPPAQPL	11	Unmodified	_FHQGPPPAQPL_					0	0	0		ENST00000576487.5_1_17:7011095-7018009:-|nuORF;nc|ENSG00000161944|P07307-3|ASGR2;nc|ENSG00000161944|P07307-2|ASGR2	ENST00000576487.5_1_17:7011095-7018009:-|nuORF	ENST00000576487.5_1_17:7011095-7018009:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	594.811648	1187.60874	-0.38381	-0.0002283	-0.98898	-0.00058826	-1.3728	-0.00081655	594.811070671409	29.161	0.24976	29.161	29.087	29.337	0	-0.17979	-0.00073146	NaN	26.693	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15466			11006	13948	9041	9051							0.022442366001769187
FHRLRFLPVEK	11	Unmodified	_FHRLRFLPVEK_					0	0	0			REV__ENSG00000171094|ENST00000389048|ALK	REV__ENSG00000171094|ENST00000389048|ALK	MULTI-MSMS	OvCa9_classI_Rep3	3	481.2818603515625	3	481.285739	1440.83539	-6.6786	-0.0032143	2.0959	0.0010087	-4.5828	-0.0022056	481.2868612614486	161.01	3.7232	159.65	158.49	162.21	-1.3523					206	77	3	0	0	0	0.72552	1	14162	14162		8.7993	0.39205	1	127690	+		11007	21590	9042	9052	11888	11888					0.13260400159106212
FHRQQIKSFP	10	Unmodified	_FHRQQIKSFP_					0	0	0		ENST00000408959.2_1_3:48955513-48955681:-|nuORF	ENST00000408959.2_1_3:48955513-48955681:-|nuORF	ENST00000408959.2_1_3:48955513-48955681:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	644.3500366210938	2	644.351471	1286.68839	-6.1065	-0.0039348	3.487	0.0022469	-2.6195	-0.0016879	644.3535517231257	156.22	1.1461	155.15	154.82	155.96	-1.073					70	25	4	0	0	0	0.73378	1	13441	13441		26.693	4.1133	1	162170			11008	11508	9043	9053	11889	11889					0.05651303274157726
FHRRRFFVEDL	11	Unmodified	_FHRRRFFVEDL_					0	0	0			REV__ENST00000462039.5_1_6:74192220-74192271:+|nuORF	REV__ENST00000462039.5_1_6:74192220-74192271:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.78448486328125	3	507.940632	1520.80007	3.5593	0.0018079	0.6017	0.00030563	4.161	0.0021135	508.2744858009159	88.192	1.2916	88.192	87.712	89.004	0					38	27	2	0	0	0	0.026145	1	9326	9326		17.833	0	1	872400	+		11009	26106	9044	9054	11890	11890					0.060497376312923734
FHVSIAKND	9	Unmodified	_FHVSIAKND_					0	0	0		ENSG00000175097|ENST00000311485|RAG2	ENSG00000175097|ENST00000311485|RAG2	ENSG00000175097|ENST00000311485|RAG2	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.2987670898438	2	515.769448	1029.52434	0.74742	0.0003855	-2.7783	-0.001433	-2.0309	-0.0010475	515.7678457281943	103.73	0.73297	102.3	102.13	102.86	-1.4347					16	13	2	0	0	0	0.027455	1	7230	7230		34.173	3.8548	1	50108			11010	7514	9045	9055	11891	11891					0.010762857834379247
FHVSIAKND	9	Unmodified	_FHVSIAKND_					0	0	0		ENSG00000175097|ENST00000311485|RAG2	ENSG00000175097|ENST00000311485|RAG2	ENSG00000175097|ENST00000311485|RAG2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	515.769448	1029.52434	-0.66357	-0.00034225	-2.0091	-0.0010362	-2.6727	-0.0013785	515.7678473816775	104.38	0.57733	102.27	101.96	102.53	-2.1192	-0.069087	0.00067455	NaN	34.173	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35045			11011	7514	9045	9055							0.010762857834379247
FHYLLGVTP	9	Unmodified	_FHYLLGVTP_					0	0	0		UBR1|p.F1551Gfs*31|1|0.15|ENSG00000159459|chr15:42963962-42963984|CAATATTCCTGGAAGAGCAGGAA/-|frameshift_variant;ENSG00000159459|ENST00000290650|UBR1	UBR1|p.F1551Gfs*31|1|0.15|ENSG00000159459|chr15:42963962-42963984|CAATATTCCTGGAAGAGCAGGAA/-|frameshift_variant	UBR1|p.F1551Gfs*31|1|0.15|ENSG00000159459|chr15:42963962-42963984|CAATATTCCTGGAAGAGCAGGAA/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.814453125	2	523.78711	1045.55967	1.105	0.00057878	2.5502	0.0013358	3.6552	0.0019145	524.2897980287852	107.06	0.25583	107.06	106.93	107.19	0					8	5	2	0	0	0	0.027462	1	12070	12070		40.573	23.208	1	233400			11012	6014	9046	9056	11892	11892					0.038709483112370435
FHYPGVQNL	9	Unmodified	_FHYPGVQNL_					0	0	0		nc|ENSG00000085433|O94967-2|WDR47;ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47	nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	MULTI-MSMS	OvCa99_classI_Rep5	1	537.7744750976562	2	537.771991	1073.52943	1.7795	0.00095694	0.24249	0.0001304	2.0219	0.0010873	537.7718459168307	92.513	1.4686	92.513	91.794	93.263	0					84	34	3	0	0	0	0.098892	1	10007	10007		97.473	27.845	1	3223800			11013	1729	9047	9057	11893	11893					-0.004394103539425487
FIAATVCVAPE	11	Unmodified	_FIAATVCVAPE_					0	0	0		ENST00000343533.9_1_X:77166243-77166309:+|nuORF	ENST00000343533.9_1_X:77166243-77166309:+|nuORF	ENST00000343533.9_1_X:77166243-77166309:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	560.7898559570312	2	560.788992	1119.56343	0.076238	4.2753E-05	3.0459	0.0017081	3.1221	0.0017508	560.7906951341574	64.273	2.9179	61.548	60.968	63.886	-2.7245					181	56	6	0	0	0	0.50928	1	4882	4882		52.937	3.4007	1	2758800			11014	10601	9048	9058	11894	11894					0.008432500227854689
FIADHCPTL	9	Unmodified	_FIADHCPTL_					0	0	0		ENSG00000169727|ENST00000578552|GPS1;nc|ENSG00000169727|Q13098|GPS1;nc|ENSG00000169727|Q13098-7|GPS1;ENST00000392357.1_1_17:80010993-80011926:+|nuORF	ENSG00000169727|ENST00000578552|GPS1	ENSG00000169727|ENST00000578552|GPS1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.7491455078125	2	508.747127	1015.4797	2.5055	0.0012747	0.12629	6.4247E-05	2.6318	0.0013389	508.74700576834215	94.575	1.5231	94.575	94.22	95.743	0					62	35	3	0	0	0	0.16524	1	10314	10314		82.305	2.854	1	1106200			11015	7035	9049	9059	11895	11895					-0.02741861354274988
FIADVVEKI	9	Unmodified	_FIADVVEKI_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1;nc|ENSG00000170801|P83110-2|HTRA3;ENSG00000170801|ENST00000307358|HTRA3	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	OvCa99_classI_Rep5	1	517.302490234375	2	517.30005	1032.58555	1.3188	0.00068222	0.87563	0.00045296	2.1944	0.0011352	517.3002945227834	110.03	0.94281	110.03	109.73	110.67	0					38	20	2	0	0	0	0.036986	1	12478	12478		129.42	39.051	1	1512000			11016	6630	9050	9060	11896	11896					0.07055797762859584
FIAFAYLLI	9	Unmodified	_FIAFAYLLI_					0	0	0		tr|A0A553SKZ7|A0A553SKZ7_NIACIMetallophosphoesteraseOS=NialliacirculansOX=1397GN=CEQ21_19665PE=4SV=1	tr|A0A553SKZ7|A0A553SKZ7_NIACIMetallophosphoesteraseOS=NialliacirculansOX=1397GN=CEQ21_19665PE=4SV=1	tr|A0A553SKZ7|A0A553SKZ7_NIACIMetallophosphoesteraseOS=NialliacirculansOX=1397GN=CEQ21_19665PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.3171997070312	2	535.817879	1069.6212	1.8052	0.00096728	-4.0054	-0.0021462	-2.2001	-0.0011789	535.8157165564588	126.29	1.1947	126.29	125.95	127.14	0					48	25	4	0	0	0	0.53728	1	14649	14649		39.021	4.849	1	317670			11017	33670	9051	9061	11897	11897					0.08917880010517365
FIAFAYLLI	9	Unmodified	_FIAFAYLLI_					0	0	0		tr|A0A553SKZ7|A0A553SKZ7_NIACIMetallophosphoesteraseOS=NialliacirculansOX=1397GN=CEQ21_19665PE=4SV=1	tr|A0A553SKZ7|A0A553SKZ7_NIACIMetallophosphoesteraseOS=NialliacirculansOX=1397GN=CEQ21_19665PE=4SV=1	tr|A0A553SKZ7|A0A553SKZ7_NIACIMetallophosphoesteraseOS=NialliacirculansOX=1397GN=CEQ21_19665PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	535.817879	1069.6212	-0.13192	-7.0684E-05	-5.0637	-0.0027132	-5.1956	-0.0027839	535.8154735322018	126.43	0.34207	126.2	125.95	126.29	-0.2359	-0.044584	-0.0010882	NaN	39.021	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11841			11018	33670	9051	9061							0.08917880010517365
FIAFAYLLIAG	11	Unmodified	_FIAFAYLLIAG_					0	0	0		tr|A0A553SKZ7|A0A553SKZ7_NIACIMetallophosphoesteraseOS=NialliacirculansOX=1397GN=CEQ21_19665PE=4SV=1	tr|A0A553SKZ7|A0A553SKZ7_NIACIMetallophosphoesteraseOS=NialliacirculansOX=1397GN=CEQ21_19665PE=4SV=1	tr|A0A553SKZ7|A0A553SKZ7_NIACIMetallophosphoesteraseOS=NialliacirculansOX=1397GN=CEQ21_19665PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	600.3241577148438	2	599.847167	1197.67978	2.8736	0.0017237	-4.1585	-0.0024945	-1.2849	-0.00077075	599.8452305580901	87.882	0.37482	87.882	87.712	88.087	0					16	8	3	0	0	0	0.025652	1	9331	9331		40.573	8.6178	1	324740			11019	33670	9052	9062	11898	11898					0.08884936585013747
FIAGAKMILP	10	Unmodified	_FIAGAKMILP_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.322021484375	2	530.814813	1059.61507	1.0333	0.00054849	0.963	0.00051118	1.9963	0.0010597	530.8152756942595	124.42	0.78488	124.42	124.15	124.93	0					32	16	3	0	0	0	0.026519	1	14416	14416		76.847	13.868	1	263270			11020	2891	9053	9063	11899	11899					0.0876503850734025
FIAHYLILY	9	Unmodified	_FIAHYLILY_					0	0	0			REV__nc|ENSG00000102383|Q96MV8-2|ZDHHC15	REV__nc|ENSG00000102383|Q96MV8-2|ZDHHC15	MULTI-MSMS	OvCa9_classI_Rep4_	4	576.8243408203125	2	576.826235	1151.63792	0.33751	0.00019468	-3.9759	-0.0022934	-3.6384	-0.0020987	576.8238272522236	110.1	2.633	108.5	107.86	110.49	-1.6011					111	49	4	0	0	0	0.53728	1	10127	10127		39.021	0.21535	1	307950	+		11021	17552	9054	9064	11900	11900					0.06816380896498231
FIAIAFGVI	9	Unmodified	_FIAIAFGVI_					0	0	0		tr|A0A553SH77|A0A553SH77_NIACIYdbS-likePHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12315PE=4SV=1	tr|A0A553SH77|A0A553SH77_NIACIYdbS-likePHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12315PE=4SV=1	tr|A0A553SH77|A0A553SH77_NIACIYdbS-likePHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12315PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	475.78759765625	2	475.789121	949.56369	-1.1235	-0.00053453	-3.1454	-0.0014966	-4.2689	-0.0020311	475.7874263780674	139.39	1.0332	139.16	138.81	139.84	-0.22696					43	20	3	0	0	0	0.61768	1	13908	13908		29.842	6.7991	1	86387			11022	33246	9055	9065	11901	11901					0.08689037804947475
FIAKVIQRL	9	Unmodified	_FIAKVIQRL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;COL6A3|p.T1393Cfs*9|1|0.09|ENSG00000163359|chr2:237371828-237371840|GCTCCCGGAAGGT/-|frameshift_variant;COL6A3|p.K1001Nfs*34|1|0.23|ENSG00000163359|chr2:237376800-237376839|TTTTAAGAGATTCACTATCTGTGGATGAAGATCTCCAATC/-|frameshift_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	544.3545532226562	2	544.352951	1086.69135	1.2269	0.00066788	0.58628	0.00031914	1.8132	0.00098703	544.3532755159533	83.402	1.7636	83.402	83.078	84.841	0					113	41	4	0	0	0	0.16524	1	8726	8726		82.305	0	1	6347900			11023	6293	9056	9066	11902	11902					0.15147178398979122
FIAPTGHSL	9	Unmodified	_FIAPTGHSL_					0	0	0		ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;nc|ENSG00000125354|Q14141-3|SEPTIN6;ENSG00000138758|ENST00000264893|SEPTIN11;nc|ENSG00000138758|Q9NVA2-2|SEPTIN11	ENSG00000125354|ENST00000394610|SEPTIN6;ENSG00000138758|ENST00000264893|SEPTIN11	ENSG00000138758|ENST00000264893|SEPTIN11	MULTI-MSMS	OvCa99_classI_Rep5	1	471.7566833496094	2	471.75581	941.497067	2.1454	0.0010121	-0.23461	-0.00011068	1.9108	0.00090144	471.7556125413328	77.44	2.4336	77.44	76.961	79.394	0					117	58	5	0	0	0	0.071436	2	7787	7787;7848		106.42	18.661	1	33909000			11024	3701;4722	9057	9067	11903;11904	11903					0.023978022430469537
FIARAVLRIQS	11	Unmodified	_FIARAVLRIQS_					0	0	0		ENSG00000177535|ENST00000641149|OR2B11	ENSG00000177535|ENST00000641149|OR2B11	ENSG00000177535|ENST00000641149|OR2B11	MULTI-MSMS	OvCa9_classI_Rep3	3	425.2624816894531	3	425.262823	1272.76664	1.4407	0.0006127	-1.5109	-0.00064252	-0.070139	-2.9828E-05	425.2621237617474	67.802	1.1518	64.915	64.689	65.841	-2.8873					66	22	4	0	0	0	0.70587	1	2895	2895		27.644	0.89421	1	238150			11025	7690	9058	9068	11905	11905					0.1411673585942026
FIARETTCSK	10	Unmodified	_FIARETTCSK_					0	0	0		CON__P01045-1;CON__Q2KJ62;CON__P01044-1	CON__P01045-1	CON__P01045-1	MULTI-MSMS	OvCa9_classI_Rep3	3	578.289794921875	2	578.294973	1154.57539	-7.6021	-0.0043963	-1.6299	-0.00094256	-9.232	-0.0053388	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.6349	1	13472	13472		37.812	6.2817	1	1429200		+	11026	614	9059	9069	11906	11906					0.004288667659466228
FIASKGVKLV	10	Unmodified	_FIASKGVKLV_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENSG00000248746|ENST00000513398|ACTN3;ACTN4|p.M373Tfs*31|1|0.33|ENSG00000130402|chr19:38717290-38717291|-/CT|frameshift_variant;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF	nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	OvCa99_classI_Rep5	1	531.340087890625	2	531.33951	1060.66447	0.47426	0.00025199	-0.25655	-0.00013632	0.21771	0.00011568	531.3392133513474	72.473	1.2713	72.473	72.208	73.479	0					62	31	4	0	0	0	0.12738	1	7052	7052		106.68	15.906	1	4171800			11027	1464;3986	9060	9070	11907	11907					0.13656069787793967
FIATPVLFCI	10	Unmodified	_FIATPVLFCI_					0	0	0			REV__L1MA6_dup4553|chr14:32965001-32966588:+|1.0811544242595916|0.0860524180403581|3.65|423.0|98|3|anti-sense	REV__L1MA6_dup4553|chr14:32965001-32966588:+|1.0811544242595916|0.0860524180403581|3.65|423.0|98|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.3446655273438	2	562.314646	1122.61474	0.72363	0.00040691	-0.84383	-0.0004745	-0.1202	-6.7589E-05	562.3136996842032	52.8	0.47748	52.8	52.566	53.043	0					22	10	3	0	0	0	0.026822	1	4154	4154		38.806	8.3025	1	731260	+		11028	28405	9061	9071	11908	11908					0.05833618787505657
FIAVAILLTY	10	Unmodified	_FIAVAILLTY_					0	0	0			REV__tr|A0A553SKT1|A0A553SKT1_NIACIRhodanese-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_19385PE=4SV=1	REV__tr|A0A553SKT1|A0A553SKT1_NIACIRhodanese-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_19385PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	562.3427734375	2	562.341718	1122.66888	-1.142	-0.00064221	3.7902	0.0021314	2.6482	0.0014892	562.3438081477608	141.84	4.7959	141.62	140.24	145.03	-0.22697					133	96	2	0	0	0	0.71192	1	14243	14243		29.15	2.4566	1	113870	+		11029	30150	9062	9072	11909	11909					0.11245534210706865
FIAVCYAF	8	Unmodified	_FIAVCYAF_					0	0	0		ENST00000497894.1_1_X:151355814-151358393:-|nuORF;ENSG00000151834|ENST00000381620|GABRA2;nc|ENSG00000151834|P47869-2|GABRA2;ENSG00000022355|ENST00000393943|GABRA1;ENSG00000186297|ENST00000335625|GABRA5;ENSG00000011677|ENST00000370314|GABRA3	ENST00000497894.1_1_X:151355814-151358393:-|nuORF	ENST00000497894.1_1_X:151355814-151358393:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.75457763671875	2	467.230582	932.446611	-0.046611	-2.1778E-05	-1.4712	-0.00068738	-1.5178	-0.00070916	467.2298502542278	68.702	0.53722	68.702	68.44	68.977	0					19	12	2	0	0	0	0.028476	1	6505	6505		43.626	0	1	216620			11030	970	9063	9073	11910	11910					-0.02231443406321887
FICCFPCTPL	10	2 Carbamidomethyl (C)	_FIC(Carbamidomethyl (C))CFPC(Carbamidomethyl (C))TPL_	FIC(0.502)C(0.502)FPC(0.996)TPL		FIC(0)C(0)FPC(21)TPL		0	2	0			REV__ENST00000337198.9_1_8:103855961-103870277:-|nuORF	REV__ENST00000337198.9_1_8:103855961-103870277:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	629.2779541015625	2	629.27688	1256.53921	-2.0177	-0.0012697	3.8079	0.0023962	1.7902	0.0011266	629.2792052758709	117.72	2.1801	117.57	117.19	119.37	-0.14755					115	43	5	0	0	0	0.39971	1	11278	11278		68.485	15.133	3	400120	+		11031	24595	9064	9074	11911	11911	295;296;297				-0.07880049726736615
FICDVLVKCEN	11	Unmodified	_FICDVLVKCEN_					0	0	0			REV__tr|A0A7D7AHC9|A0A7D7AHC9_9CLOTBifunctionalNAD(P)H-hydraterepairenzymeOS=ClostridiumintestinaleOX=36845GN=nnrEPE=3SV=1	REV__tr|A0A7D7AHC9|A0A7D7AHC9_9CLOTBifunctionalNAD(P)H-hydraterepairenzymeOS=ClostridiumintestinaleOX=36845GN=nnrEPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	641.3552856445312	2	641.812141	1281.60973	1.2221	0.00078439	3.892	0.002498	5.1142	0.0032823	641.8144931992939	124.2	0.68752	124.2	124.01	124.7	0					27	14	2	0	0	0	0.02538	1	14356	14356		23.523	0	1	149300	+		11032	32729	9065	9075	11912	11912					-0.019810531374105267
FICLTVLHF	9	Unmodified	_FICLTVLHF_					0	0	0			REV__chr1:103745515-103750424|261|25.86|0.0|21.3|+|2|TE_info:HERVE_a-int,HERVE_a-int_dup8,ERV1,LTR,donor,-,103742654,103745515|None,AMY1C|46	REV__chr1:103745515-103750424|261|25.86|0.0|21.3|+|2|TE_info:HERVE_a-int,HERVE_a-int_dup8,ERV1,LTR,donor,-,103742654,103745515|None,AMY1C|46	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.801513671875	2	546.799163	1091.58377	-2.9261	-0.0016	4.4011	0.0024065	1.475	0.00080655	546.801202104479	104.1	0.38572	104.1	103.94	104.32	0					15	8	2	0	0	0	0.027462	1	11646	11646		40.573	13.88	1	217500	+		11033	15794	9066	9076	11913	11913					0.04164465473218115
FIDEIIPLL	9	Unmodified	_FIDEIIPLL_					0	0	0		tr|A0A553ST54|A0A553ST54_NIACIAmidohydrolase/deacetylasefamilymetallohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_04105PE=4SV=1	tr|A0A553ST54|A0A553ST54_NIACIAmidohydrolase/deacetylasefamilymetallohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_04105PE=4SV=1	tr|A0A553ST54|A0A553ST54_NIACIAmidohydrolase/deacetylasefamilymetallohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_04105PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2914428710938	2	536.818076	1071.6216	2.258	0.0012122	-2.6857	-0.0014417	-0.42762	-0.00022955	536.8165849175216	110.57	0.26817	110.57	110.45	110.71	0					9	5	2	0	0	0	0.027462	1	12547	12547		33.516	3.674	1	81508			11034	34455	9067	9077	11914	11914					0.08865254939723854
FIDEKERL	8	Unmodified	_FIDEKERL_					0	0	0			REV__tr|A0A7D6VX11|A0A7D6VX11_9CLOTaminodeoxychorismatesynthaseOS=ClostridiumintestinaleOX=36845GN=pabBPE=4SV=1	REV__tr|A0A7D6VX11|A0A7D6VX11_9CLOTaminodeoxychorismatesynthaseOS=ClostridiumintestinaleOX=36845GN=pabBPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	525.2869873046875	2	525.284931	1048.55531	1.0881	0.00057157	0.40378	0.0002121	1.4919	0.00078367	525.2851226284461	123.18	0.56221	123.18	122.95	123.51	0					20	11	2	0	0	0	0.67872	1	14205	14205		47.657	1.6851	1	273160	+		11035	31760	9068	9078	11915	11915					0.03297439097673305
FIDEKERL	8	Unmodified	_FIDEKERL_					0	0	0			REV__tr|A0A7D6VX11|A0A7D6VX11_9CLOTaminodeoxychorismatesynthaseOS=ClostridiumintestinaleOX=36845GN=pabBPE=4SV=1	REV__tr|A0A7D6VX11|A0A7D6VX11_9CLOTaminodeoxychorismatesynthaseOS=ClostridiumintestinaleOX=36845GN=pabBPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	525.284931	1048.55531	0.060596	3.183E-05	-0.10386	-5.4554E-05	-0.04326	-2.2724E-05	525.2844990989532	123.33	0.39312	123.11	122.96	123.35	-0.21803	-0.032205	-0.00041175	NaN	47.657	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15783	+		11036	31760	9068	9078							0.03297439097673305
FIDEKERL	8	Unmodified	_FIDEKERL_					0	0	0			REV__tr|A0A7D6VX11|A0A7D6VX11_9CLOTaminodeoxychorismatesynthaseOS=ClostridiumintestinaleOX=36845GN=pabBPE=4SV=1	REV__tr|A0A7D6VX11|A0A7D6VX11_9CLOTaminodeoxychorismatesynthaseOS=ClostridiumintestinaleOX=36845GN=pabBPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	525.284931	1048.55531	0.94561	0.00049671	-0.52112	-0.00027374	0.42449	0.00022298	525.7860633874108	124.17	0.62092	123.14	122.62	123.24	-1.0377	-0.0047153	-0.00085011	NaN	47.657	16	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16099	+		11037	31760	9068	9078							0.03297439097673305
FIDFSIGDVA	10	Unmodified	_FIDFSIGDVA_					0	0	0			REV__tr|A0A553SFM5|A0A553SFM5_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09055PE=3SV=1	REV__tr|A0A553SFM5|A0A553SFM5_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09055PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.2584228515625	2	542.27149	1082.52843	1.0195	0.00055287	0.74082	0.00040173	1.7604	0.00095459	542.2713866732338	156.44	0.75781	156.44	155.89	156.65	0					20	14	2	0	0	0	0.026849	1	18316	18316		40.778	7.2626	1	43331	+		11038	29592	9069	9079	11916	11916					-0.009536695135011541
FIDKRNQAE	9	Unmodified	_FIDKRNQAE_					0	0	0			REV__tr|A0A553SFK1|A0A553SFK1_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_09045PE=4SV=1	REV__tr|A0A553SFK1|A0A553SFK1_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_09045PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	560.7905883789062	2	560.790912	1119.56727	0.076238	4.2753E-05	-0.37774	-0.00021183	-0.3015	-0.00016908	560.7906951341574	64.273	2.9179	61.548	60.968	63.886	-2.7245					181	56	6	0	0	0	0.44248	1	4942	4942		47.96	3.5823	1	2758800	+		11039	29586	9070	9080	11917	11917					0.012270558408772558
FIDKTVDKIY	10	Unmodified	_FIDKTVDKIY_					0	0	0			REV__tr|A0A7D7AC15|A0A7D7AC15_9CLOTDUF3021domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17400PE=4SV=1	REV__tr|A0A7D7AC15|A0A7D7AC15_9CLOTDUF3021domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17400PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	621.341552734375	2	621.342446	1240.67034	1.2033	0.00074765	0.4205	0.00026128	1.6238	0.0010089	621.3426647167269	130.43	0.9534	130.43	130.01	130.96	0					42	19	3	0	0	0	0.49558	1	15132	15132		54.776	6.8607	1	203220	+		11040	32682	9071	9081	11918	11918					0.059631235088318135
FIDLIGIDLTQ	11	Unmodified	_FIDLIGIDLTQ_					0	0	0			REV__ENST00000375857.6_1_13:109445985-109707944:+|nuORF	REV__ENST00000375857.6_1_13:109445985-109707944:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	624.3466796875	2	624.347729	1246.6809	-2.3549	-0.0014703	2.5605	0.0015987	0.20566	0.00012841	624.3490944582915	149.23	1.2985	147.8	147.28	148.58	-1.4344					56	26	3	0	0	0	0.72324	1	14705	14705		21.686	2.5822	1	86228	+		11041	16632	9072	9082	11919	11919					0.06743106163253287
FIDLWNKI	8	Unmodified	_FIDLWNKI_					0	0	0		tr|A0A7D6VT06|A0A7D6VT06_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_08815PE=3SV=1	tr|A0A7D6VT06|A0A7D6VT06_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_08815PE=3SV=1	tr|A0A7D6VT06|A0A7D6VT06_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_08815PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2869873046875	2	524.794935	1047.57532	1.1792	0.00061886	0.70883	0.00037199	1.8881	0.00099085	524.795031465855	123.18	2.0182	123.18	122.27	124.28	0					56	43	2	0	0	0	0.028476	1	14205	14205		58.782	7.4465	1	101050			11042	35075	9073	9083	11920	11920					0.05343234828296772
FIDRMGPQLS	10	Unmodified	_FIDRMGPQLS_					0	0	0			REV__ENSG00000135763|ENST00000258243|URB2	REV__ENSG00000135763|ENST00000258243|URB2	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.8421630859375	2	582.297516	1162.58048	-0.70591	-0.00041105	0.52605	0.00030631	-0.17987	-0.00010474	582.2999703082755	53.173	0.43224	53.173	52.873	53.305	0					12	9	2	0	0	0	0.02717	1	4178	4178		17.468	0	1	69713	+		11043	19320	9074	9084	11921	11921					0.005691706285915643
FIDRSLKE	8	Unmodified	_FIDRSLKE_					0	0	0		ENSG00000197140|ENST00000379907|ADAM32	ENSG00000197140|ENST00000379907|ADAM32	ENSG00000197140|ENST00000379907|ADAM32	MSMS	OvCa99_classI_Rep5	1	504.28302001953125	2	504.279649	1006.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.973	1	66.973	66.473	67.473	0								0	0	0	0.30129	1	6239	6239		66.429	3.123	1				11044	8682	9075	9085	11922	11922					0.04173456443231771
FIDTSKSMH	9	Unmodified	_FIDTSKSMH_					0	0	0		tr|A0A7D6VWT6|A0A7D6VWT6_9CLOTDUF58domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05440PE=4SV=1	tr|A0A7D6VWT6|A0A7D6VWT6_9CLOTDUF58domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05440PE=4SV=1	tr|A0A7D6VWT6|A0A7D6VWT6_9CLOTDUF58domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05440PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.3485717773438	2	533.255317	1064.49608	-1.4206	-0.00075755	1.0819	0.00057694	-0.33869	-0.00018061	533.2558869800072	94.854	0.45146	92.385	92.16	92.611	-2.4685					14	8	2	0	0	0	0.027453	1	8318	8318		54.776	5.3348	1	24706			11045	35260	9076	9086	11923	11923					-0.033587801881594714
FIDTTSKF	8	Unmodified	_FIDTTSKF_					0	0	0		ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF;ENSG00000100316|ENST00000216146|RPL3	ENSG00000140986|ENST00000268661|RPL3L	ENSG00000140986|ENST00000268661|RPL3L	MULTI-MSMS	OvCa99_classI_Rep5	1	479.74884033203125	2	479.74765	957.480748	2.1939	0.0010525	0.23704	0.00011372	2.4309	0.0011662	479.7475777367732	76.792	1.4526	76.792	76.558	78.011	0					78	34	4	0	0	0	0.10246	2	7703	7703;7734		143.11	41.895	1	10456000			11046	4886	9077	9087	11924;11925	11924					0.0003067628629196406
FIEDAVHVL	9	Unmodified	_FIEDAVHVL_					0	0	0		ENST00000422095.1_3_7:92000906-92025787:+|nuORF;ENSG00000001629|ENST00000265742|ANKIB1	ENST00000422095.1_3_7:92000906-92025787:+|nuORF	ENST00000422095.1_3_7:92000906-92025787:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	521.7830200195312	2	521.782025	1041.5495	2.0558	0.0010727	0.2593	0.0001353	2.3151	0.001208	521.7819918777279	107.95	1.7711	107.95	107.69	109.46	0					76	40	4	0	0	0	0.032351	1	12187	12187		133.47	53.53	1	2945600			11047	806	9078	9088	11926	11926					0.030383405859993218
FIEEQARLI	9	Unmodified	_FIEEQARLI_					0	0	0			REV__nc|ENSG00000129219|O14939-4|PLD2	REV__nc|ENSG00000129219|O14939-4|PLD2	MULTI-MSMS	OvCa99_classI_Rep5	1	559.8186645507812	2	559.813856	1117.61316	2.0742	0.0011611	3.1356	0.0017553	5.2097	0.0029165	559.8156915922438	133.1	8.2265	133.1	132.6	140.83	0					464	175	6	0	0	0	0.18193	1	16026	16026		79.451	8.1553	1	47573000	+		11048	28842	9079	9089	11927	11927					0.05905701023107213
FIEGVAPRL	9	Unmodified	_FIEGVAPRL_					0	0	0			REV__ENST00000477948.1_1_1:107866915-107871621:+|nuORF	REV__ENST00000477948.1_1_1:107866915-107871621:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	501.2906494140625	2	501.292559	1000.57057	-0.80197	-0.00040202	-3.5119	-0.0017605	-4.3139	-0.0021625	501.2906816095173	135.63	4.8104	135.4	133.71	138.52	-0.22697					221	98	3	0	0	0	0.63422	1	13619	13619		27.882	0	1	70595	+		11049	20758	9080	9090	11928	11928					0.07030350685522535
FIEIYRNL	8	Unmodified	_FIEIYRNL_					0	0	0			REV__ENST00000469172.5_1_10:70098233-70101808:+|nuORF	REV__ENST00000469172.5_1_10:70098233-70101808:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.832763671875	2	534.297842	1066.58113	1.5075	0.00080546	-0.26303	-0.00014053	1.2445	0.00066493	534.2982551310481	130.48	0.23969	130.48	130.34	130.58	0					6	4	2	0	0	0	0.028476	1	15133	15133		24.203	6.8378	1	19593	+		11050	26239	9081	9091	11929	11929					0.05050333339931967
FIEQSQSVPL	10	Unmodified	_FIEQSQSVPL_					0	0	0			REV__nc|ENSG00000288701|Q5JSZ5-4|PRRC2B	REV__nc|ENSG00000288701|Q5JSZ5-4|PRRC2B	MULTI-MSMS	OvCa9_classI_Rep2	2	574.3028564453125	2	574.303321	1146.59209	-0.32227	-0.00018508	-3.9222	-0.0022525	-4.2445	-0.0024376	574.3012965384783	30.687	0.83693	27.977	27.804	28.641	-2.7097					34	16	3	0	0	0	0.73378	1	901	901		26.693	1.1189	1	116960	+		11051	29209	9082	9092	11930	11930					0.0246569092360005
FIESLCPVIP	10	Unmodified	_FIESLCPVIP_					0	0	0		nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;nc|ENSG00000176225|Q86VV8-4|RTTN;RTTN|p.K1324Nfs*13|1|0.04|ENSG00000176225|chr18:70092736-70092737|-/A|frameshift_variant	nc|ENSG00000176225|Q86VV8-3|RTTN	nc|ENSG00000176225|Q86VV8-3|RTTN	MSMS	OvCa99_classI_Rep5	1	559.3029174804688	2	559.301736	1116.58892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.44	1	120.44	119.94	120.94	0								0	0	0	0.13325	1	13841	13841		55.504	4.1688	1				11052	7592	9083	9093	11931	11931					0.03528724545208206
FIFAFPLMLLF	11	Unmodified	_FIFAFPLMLLF_					0	0	0		nc|ENSG00000158296|Q8WWT9-3|SLC13A3;nc|ENSG00000158296|Q8WWT9-6|SLC13A3;ENSG00000158296|ENST00000279027|SLC13A3	nc|ENSG00000158296|Q8WWT9-3|SLC13A3	nc|ENSG00000158296|Q8WWT9-3|SLC13A3	MULTI-MSMS	OvCa9_classI_Rep4_	4	453.5899658203125	3	453.590889	1357.75084	-1.9825	-0.00089925	-2.4348	-0.0011044	-4.4173	-0.0020036	453.58970438081155	88.093	1.4973	85.491	85.179	86.676	-2.6027					78	29	4	0	0	0	0.70761	1	7510	7510		27.047	2.5281	1	406640			11053	5944	9084	9094	11932	11932					0.08627313298143235
FIFAFPLMLLF	11	Unmodified	_FIFAFPLMLLF_					0	0	0		nc|ENSG00000158296|Q8WWT9-3|SLC13A3;nc|ENSG00000158296|Q8WWT9-6|SLC13A3;ENSG00000158296|ENST00000279027|SLC13A3	nc|ENSG00000158296|Q8WWT9-3|SLC13A3	nc|ENSG00000158296|Q8WWT9-3|SLC13A3	MULTI-MATCH	OvCa9_classI_Rep2	2		3	453.590889	1357.75084	2.0303	0.00092094	-5.9189	-0.0026848	-3.8886	-0.0017638	453.5881272406531	86.666	1.5708	85.235	84.909	86.48	-1.4311	-0.18859	-0.0024048	NaN	27.047	87	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	368050			11054	5944	9084	9094							0.08627313298143235
FIFAFPLMLLF	11	Unmodified	_FIFAFPLMLLF_					0	0	0		nc|ENSG00000158296|Q8WWT9-3|SLC13A3;nc|ENSG00000158296|Q8WWT9-6|SLC13A3;ENSG00000158296|ENST00000279027|SLC13A3	nc|ENSG00000158296|Q8WWT9-3|SLC13A3	nc|ENSG00000158296|Q8WWT9-3|SLC13A3	MULTI-MATCH	OvCa9_classI_Rep3	3		3	453.590889	1357.75084	-0.59285	-0.00026891	-2.8378	-0.0012872	-3.4307	-0.0015561	453.5895616679318	87.722	1.6103	85.545	85.19	86.8	-2.1768	0.12163	0.0017878	NaN	27.047	84	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	457950			11055	5944	9084	9094							0.08627313298143235
FIFEKKLAQA	10	Unmodified	_FIFEKKLAQA_					0	0	0		ANKLE2|p.R560Kfs*4|1|0.14|ENSG00000176915|chr12:132735427-132735428|-/T|frameshift_variant;nc|ENSG00000176915|Q86XL3-2|ANKLE2;DHX30-ANKLE2|1|fusion;ENSG00000176915|ENST00000357997|ANKLE2	ANKLE2|p.R560Kfs*4|1|0.14|ENSG00000176915|chr12:132735427-132735428|-/T|frameshift_variant	ANKLE2|p.R560Kfs*4|1|0.14|ENSG00000176915|chr12:132735427-132735428|-/T|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	597.8494262695312	2	597.847699	1193.68084	2.0278	0.0012123	0.096576	5.7738E-05	2.1243	0.00127	597.8476174099628	78.017	0.9115	78.017	77.714	78.625	0					54	21	4	0	0	0	0.48398	1	7910	7910		56.434	6.9922	1	2883800			11056	92	9085	9095	11933	11933					0.09175150953888078
FIFFKSKK	8	Unmodified	_FIFFKSKK_					0	0	0			REV__tr|A0A7D6VNH8|A0A7D6VNH8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12960PE=4SV=1	REV__tr|A0A7D6VNH8|A0A7D6VNH8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12960PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	522.8123779296875	2	522.81567	1043.61679	-1.291	-0.00067494	-1.4463	-0.00075614	-2.7373	-0.0014311	522.814957070394	118.97	0.69121	118.82	118.58	119.27	-0.14755					29	13	3	0	0	0	0.71369	1	11443	11443		40.573	3.4135	1	61398	+		11057	31182	9086	9096	11934	11934					0.0967241558760179
FIFHAKLL	8	Unmodified	_FIFHAKLL_					0	0	0			REV__ENST00000368194.7_1_1:156921476-156926255:-|nuORF	REV__ENST00000368194.7_1_1:156921476-156926255:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	494.8016357421875	2	494.802563	987.590573	1.5976	0.00079047	-3.8569	-0.0019084	-2.2594	-0.0011179	494.800548895128	110.97	0.75297	110.97	110.63	111.38	0					32	16	3	0	0	0	0.40641	2	12602	12602;12626		86.935	11.133	1	460540	+		11058	24914	9087	9097	11935;11936	11935					0.09628146416127947
FIFHERIIN	9	Unmodified	_FIFHERIIN_					0	0	0			REV__ENSG00000163960|ENST00000296328|UBXN7	REV__ENSG00000163960|ENST00000296328|UBXN7	MULTI-MSMS	OvCa9_classI_Rep4_	4	594.829833984375	2	594.82984	1187.64513	0.28085	0.00016705	-3.6615	-0.0021779	-3.3806	-0.0020109	594.827747358638	77.811	1.4821	74.995	74.584	76.067	-2.8165					102	30	5	0	0	0	0.48047	1	6231	6231		44.377	5.1244	1	1231600	+		11059	20919	9088	9098	11937	11937					0.05881113496911894
FIFHIFHLL	9	Unmodified	_FIFHIFHLL_					0	0	0			REV__L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|430|3|anti-sense	REV__L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|430|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	594.3273315429688	2	593.84222	1185.66989	-0.63316	-0.00037599	1.2533	0.00074429	0.62019	0.00036829	593.842904134032	71.75	0.38455	68.293	68.124	68.509	-3.4563					13	7	2	0	0	0	0.027462	1	5471	5471		29.842	0	1	50972	+		11060	16041	9089	9099	11938	11938					0.08447793370260115
FIFLCGGVSL	10	Unmodified	_FIFLCGGVSL_					0	0	0		chr3:150557676-150558388|104|12.05|0.29|5.37|+|2|TE_info:AluSx,AluSx_dup22914,Alu,SINE,donor,-,150557401,150557676|None,EIF2A|1	chr3:150557676-150558388|104|12.05|0.29|5.37|+|2|TE_info:AluSx,AluSx_dup22914,Alu,SINE,donor,-,150557401,150557676|None,EIF2A|1	chr3:150557676-150558388|104|12.05|0.29|5.37|+|2|TE_info:AluSx,AluSx_dup22914,Alu,SINE,donor,-,150557401,150557676|None,EIF2A|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.2813110351562	2	528.283346	1054.55214	0.071184	3.7605E-05	-4.1377	-0.0021859	-4.0665	-0.0021483	528.2810213022229	110.49	1.6308	108.88	108.23	109.86	-1.6011					80	30	3	0	0	0	0.61209	1	10150	10150		40.573	1.7665	1	451410			11061	477	9090	9100	11939	11939					0.02704472719324258
FIFLRRTYG	9	Unmodified	_FIFLRRTYG_					0	0	0			REV__ENST00000588100.1_1_19:36235704-36236292:-|nuORF	REV__ENST00000588100.1_1_19:36235704-36236292:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.8335571289062	2	586.832383	1171.65021	-1.3959	-0.00081919	4.102	0.0024072	2.7061	0.001588	586.8348196312893	145.67	2.8806	144.23	143.04	145.92	-1.4357					88	55	2	0	0	0	0.61208	1	14280	14280		30.504	7.4612	1	38613	+		11062	27884	9091	9101	11940	11940					0.07125417359520725
FIFLWCFL	8	Unmodified	_FIFLWCFL_					0	0	0		L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|349|2|anti-sense	L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|349|2|anti-sense	L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|349|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.8209838867188	2	544.785524	1087.5565	-0.62933	-0.00034285	-2.1274	-0.001159	-2.7567	-0.0015018	544.7843875000875	105.67	0.79424	103.65	103.05	103.85	-2.0161					19	15	2	0	0	0	0.028476	1	9562	9562		33.493	5.6107	1	9592.7			11063	14693	9092	9102	11941	11941					0.016219819328625817
FIFLYIFIF	9	Unmodified	_FIFLYIFIF_					0	0	0			REV__MER4C_dup475|chr13:22894085-22894537:+|1.6161857773227315|0.1072648648957019|3.91|413.0|33|3|anti-sense	REV__MER4C_dup475|chr13:22894085-22894537:+|1.6161857773227315|0.1072648648957019|3.91|413.0|33|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	611.8489379882812	2	611.849179	1221.6838	1.338	0.00081863	-1.2614	-0.00077181	0.076529	4.6824E-05	611.8480012250403	123.56	0.91865	123.56	123.14	124.06	0					57	19	4	0	0	0	0.13154	1	14245	14245		60.404	0	1	1304000	+		11064	28652	9093	9103	11942	11942					0.08183026078677358
FIFSDTHEL	9	Unmodified	_FIFSDTHEL_					0	0	0		ENSG00000102699|ENST00000381989|PARP4;PARP4|p.Y1344Afs*5|1|0.08|ENSG00000102699|chr13:24435111-24435112|-/GC|frameshift_variant	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	OvCa99_classI_Rep5	1	554.7705078125	2	554.769114	1107.52368	0.4584	0.00025431	0.27662	0.00015346	0.73503	0.00040777	554.7691564358405	105.36	1.8038	105.36	104.96	106.76	0					91	40	4	0	0	0	0.10363	1	11822	11822		96.19	24.895	1	3337600			11065	2249	9094	9104	11943	11943					-0.02578553656303484
FIFSDTHEL	9	Unmodified	_FIFSDTHEL_					0	0	0		ENSG00000102699|ENST00000381989|PARP4;PARP4|p.Y1344Afs*5|1|0.08|ENSG00000102699|chr13:24435111-24435112|-/GC|frameshift_variant	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	OvCa9_classI_Rep3	3	554.7697143554688	2	554.769114	1107.52368	-0.11208	-6.2177E-05	-1.0988	-0.00060958	-1.2109	-0.00067175	554.7684113274065	107.17	1.5734	105.9	105.57	107.15	-1.267					67	30	3	0	0	0	0.14998	2	7603	7598;7603		84.916	18.486	1	240630			11066	2249	9094	9104	11944;11945	11945					-0.02578553656303484
FIFYENLLL	9	Unmodified	_FIFYENLLL_					0	0	0		nc|ENSG00000118762|Q13563-2|PKD2;nc|ENSG00000118762|Q13563-4|PKD2;PKD2|p.M870Wfs*6|1|0.22|ENSG00000118762|chr4:88074895-88074895|T/-|frameshift_variant;nc|ENSG00000118762|Q13563-5|PKD2;nc|ENSG00000118762|Q13563-3|PKD2;ENSG00000118762|ENST00000237596|PKD2	nc|ENSG00000118762|Q13563-2|PKD2	nc|ENSG00000118762|Q13563-2|PKD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.7876586914062	2	586.323525	1170.6325	0.83945	0.00049219	1.1612	0.00068082	2.0006	0.001173	586.3240695862055	124.38	0.41327	124.38	124.19	124.61	0					18	8	3	0	0	0	0.027426	1	14383	14383		73.975	34.722	1	104690			11067	3323	9095	9105	11946	11946					0.05400657313998636
FIGAHPNSLEA	11	Unmodified	_FIGAHPNSLEA_					0	0	0			REV__ENSG00000148468|ENST00000378116|FAM171A1	REV__ENSG00000148468|ENST00000378116|FAM171A1	MULTI-MSMS	OvCa9_classI_Rep3	3	578.288330078125	2	578.293288	1154.57202	-7.6021	-0.0043963	1.2846	0.00074285	-6.3176	-0.0036534	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.65947	1	13711	13711		39.253	2.0937	1	1429200	+		11068	20111	9096	9106	11947	11947					0.0009193998364480649
FIGANRLMD	9	Unmodified	_FIGANRLMD_					0	0	0			REV__tr|A0A553SJI1|A0A553SJI1_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_16615PE=3SV=1	REV__tr|A0A553SJI1|A0A553SJI1_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_16615PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.7750244140625	2	518.765852	1035.51715	0.97777	0.00050724	0.49087	0.00025465	1.4686	0.00076188	519.2682808315184	111.28	0.67276	111.28	111.02	111.7	0					29	14	3	0	0	0	0.027456	1	12676	12676		57.811	18.79	1	188370	+		11069	30008	9097	9107	11948	11948					0.0008122991134769109
FIGDVTQKI	9	Unmodified	_FIGDVTQKI_					0	0	0		ENSG00000163872|ENST00000305135|YEATS2;ENST00000472593.1_1_3:183521690-183528368:+|nuORF	ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	MULTI-MSMS	OvCa99_classI_Rep5	1	510.7919616699219	2	510.78985	1019.56515	2.6739	0.0013658	-0.55309	-0.00028251	2.1208	0.0010833	510.789368160378	89.251	0.63777	89.251	89.043	89.681	0					35	15	3	0	0	0	0.084918	1	9518	9518		101.25	8.0572	1	1715200			11070	6369	9098	9108	11949	11949					0.056146271030456774
FIGEKPIVF	9	Unmodified	_FIGEKPIVF_					0	0	0		ENSG00000167194|ENST00000681219|C16orf92;nc|ENSG00000167194|Q96LL3|FIMP	ENSG00000167194|ENST00000681219|C16orf92	ENSG00000167194|ENST00000681219|C16orf92	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.3119506835938	2	525.305136	1048.59572	1.7625	0.00092585	-4.1857	-0.0021987	-2.4232	-0.0012729	525.3017322372575	76.718	0.32253	76.718	76.518	76.841	0					11	7	2	0	0	0	0.027462	1	7712	7712		35.618	1.4457	1	174570			11071	6769	9099	9109	11950	11950					0.07336405488103992
FIGGFRLVHTT	11	Unmodified	_FIGGFRLVHTT_					0	0	0			REV__nc|ENSG00000164418|Q13002-3|GRIK2	REV__nc|ENSG00000164418|Q13002-3|GRIK2	MULTI-MSMS	OvCa9_classI_Rep3	3	624.3478393554688	2	624.348397	1246.68224	-3.342	-0.0020866	2.2914	0.0014306	-1.0506	-0.00065593	624.3496551977445	148.78	1.3991	147.83	147.15	148.55	-0.9512					58	27	3	0	0	0	0.72459	1	12579	12579		20.947	1.8434	1	93990	+		11072	20987	9100	9110	11951	11951					0.06876785042641131
FIGGIKQIGL	10	Unmodified	_FIGGIKQIGL_					0	0	0			REV__nc|ENSG00000163873|Q13003-2|GRIK3	REV__nc|ENSG00000163873|Q13003-2|GRIK3	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3232421875	2	523.32386	1044.63317	-0.37111	-0.00019421	0.11957	6.2576E-05	-0.25153	-0.00013163	523.3237349076933	132.36	1.5282	131.23	130.94	132.47	-1.1249					65	30	3	0	0	0	0.61209	1	10620	10620		40.573	6.4001	1	96476	+		11073	20904	9101	9111	11952	11952					0.1126349675369056
FIGGPRTPAL	10	Unmodified	_FIGGPRTPAL_					0	0	0		HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|43|3|sense	HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|43|3|sense	HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|43|3|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	514.7984008789062	2	514.798009	1027.58147	0.071112	3.6608E-05	0.2623	0.00013503	0.33342	0.00017164	514.7979347787733	118.11	0.991	117.07	116.74	117.73	-1.0324					53	19	4	0	0	0	0.55359	1	8899	8899		47.657	3.2801	1	180470			11074	14412	9102	9112	11953	11953					0.06877753059779934
FIGGSLILLL	10	Unmodified	_FIGGSLILLL_					0	0	0		tr|A0A553SP86|A0A553SP86_NIACIStageVsporulationproteinEOS=NialliacirculansOX=1397GN=spoVEPE=4SV=1	tr|A0A553SP86|A0A553SP86_NIACIStageVsporulationproteinEOS=NialliacirculansOX=1397GN=spoVEPE=4SV=1	tr|A0A553SP86|A0A553SP86_NIACIStageVsporulationproteinEOS=NialliacirculansOX=1397GN=spoVEPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.3090209960938	2	523.336436	1044.65832	-0.99556	-0.00052101	0.89815	0.00047003	-0.097407	-5.0977E-05	523.3368091037167	140.73	0.9357	140.51	140.19	141.12	-0.22696					28	18	2	0	0	0	0.027117	1	14076	14076		23.042	0	1	31336			11075	34017	9103	9113	11954	11954					0.13777551556290746
FIGHYIFR	8	Unmodified	_FIGHYIFR_					0	0	0		ENSG00000163710|ENST00000295992|PCOLCE2	ENSG00000163710|ENST00000295992|PCOLCE2	ENSG00000163710|ENST00000295992|PCOLCE2	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.8068237304688	2	526.787444	1051.56034	0.83451	0.00043961	2.7304	0.0014384	3.5649	0.001878	526.786987845269	154.54	1.1539	154.54	154.22	155.38	0					59	22	4	0	0	0	0.028476	1	18191	18191		18.324	0	1	191090			11076	6352	9104	9114	11955	11955					0.03661787750934309
FIGKGSGPGLL	11	Unmodified	_FIGKGSGPGLL_					0	0	0			REV__ENST00000216297.6_1_14:21852141-21852234:-|nuORF	REV__ENST00000216297.6_1_14:21852141-21852234:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3034057617188	2	523.305667	1044.59678	-0.69596	-0.0003642	-3.2951	-0.0017244	-3.9911	-0.0020886	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.70518	1	13794	13794		27.882	1.1893	1	130240	+		11077	23722	9105	9115	11956	11956					0.07626619857023798
FIGLAFVGLLF	11	Unmodified	_FIGLAFVGLLF_					0	0	0		tr|A0A553SM07|A0A553SM07_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_21630PE=4SV=1	tr|A0A553SM07|A0A553SM07_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_21630PE=4SV=1	tr|A0A553SM07|A0A553SM07_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_21630PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	598.3180541992188	2	598.857535	1195.70052	-0.3227	-0.00019325	2.3866	0.0014292	2.0639	0.001236	598.8588302877723	109.03	0.60736	107.3	107.18	107.79	-1.7256					14	11	2	0	0	0	0.025357	1	10028	10028		50.025	23.332	1	41358			11078	33780	9106	9116	11957	11957					0.11049526964666256
FIGLPILAL	9	Unmodified	_FIGLPILAL_					0	0	0		tr|A0A553SR09|A0A553SR09_NIACIDUF2975domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00100PE=4SV=1	tr|A0A553SR09|A0A553SR09_NIACIDUF2975domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00100PE=4SV=1	tr|A0A553SR09|A0A553SR09_NIACIDUF2975domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00100PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.7822265625	2	478.812596	955.61064	-1.6637	-0.00079662	-2.5615	-0.0012265	-4.2252	-0.0020231	478.8111767391268	84.738	0.69691	83.191	82.95	83.647	-1.5462					20	13	2	0	0	0	0.027462	1	7279	7279		21.702	0	1	16803			11079	34216	9107	9117	11958	11958					0.13105897356092555
FIGNGSGADKL	11	Unmodified	_FIGNGSGADKL_					0	0	0		tr|A0A553SM28|A0A553SM28_NIACIGlutamate5-kinaseOS=NialliacirculansOX=1397GN=proBPE=3SV=1	tr|A0A553SM28|A0A553SM28_NIACIGlutamate5-kinaseOS=NialliacirculansOX=1397GN=proBPE=3SV=1	tr|A0A553SM28|A0A553SM28_NIACIGlutamate5-kinaseOS=NialliacirculansOX=1397GN=proBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	539.7930297851562	2	539.780013	1077.54547	-0.27082	-0.00014618	-0.91927	-0.0004962	-1.1901	-0.00064239	539.7796776336129	128.56	0.54628	127.1	126.95	127.5	-1.4565					15	10	2	0	0	0	0.020057	1	12289	12289		96.034	7.3907	1	8771.7			11080	33789	9108	9118	11959	11959					0.009802510922781948
FIGNYLQLN	9	Unmodified	_FIGNYLQLN_					0	0	0		ENSG00000198077|ENST00000301146|CYP2A7;ENSG00000255974|ENST00000301141|CYP2A6;ENSG00000197838|ENST00000330436|CYP2A13	ENSG00000198077|ENST00000301146|CYP2A7	ENSG00000198077|ENST00000301146|CYP2A7	MULTI-MSMS	OvCa99_classI_Rep5	1	541.2886962890625	2	541.287474	1080.5604	1.6954	0.00091769	0.89611	0.00048505	2.5915	0.0014027	541.2877269760813	92.454	0.91879	92.454	92.092	93.011	0					56	21	4	0	0	0	0.53957	1	9988	9988		38.806	0.99462	1	2979500			11081	8781	9109	9119	11960	11960					0.023337429602861448
FIGVQDLCQ	9	Unmodified	_FIGVQDLCQ_					0	0	0			REV__ENSG00000130052|ENST00000374599|STARD8	REV__ENSG00000130052|ENST00000374599|STARD8	MULTI-MSMS	OvCa99_classI_Rep5	1	511.7491455078125	2	511.75241	1021.49027	0.96374	0.0004932	-2.5593	-0.0013097	-1.5955	-0.00081651	511.7508956083582	153.8	0.87045	153.8	153.55	154.42	0					38	17	3	0	0	0	0.48047	1	18049	18049		44.377	3.599	1	159350	+		11082	18919	9110	9120	11961	11961					-0.019618786998421456
FIHHPSLMF	9	Unmodified	_FIHHPSLMF_					0	0	0		NIPBL|p.Q2202H|1|0.09|ENSG00000164190|chr5:37048518-37048518|G/T|missense_variant	NIPBL|p.Q2202H|1|0.09|ENSG00000164190|chr5:37048518-37048518|G/T|missense_variant	NIPBL|p.Q2202H|1|0.09|ENSG00000164190|chr5:37048518-37048518|G/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.79443359375	2	564.786587	1127.55862	1.8409	0.0010397	-1.1932	-0.00067389	0.64777	0.00036585	565.2880446117664	89.772	0.29825	87.197	87	87.298	-2.575					9	5	2	0	0	0	0.027462	1	7688	7688		26.796	16.531	1	26690			11083	15430	9111	9121	11962	11962					-5.589329316535441E-05
FIHHPSLMF	9	Unmodified	_FIHHPSLMF_					0	0	0		NIPBL|p.Q2202H|1|0.09|ENSG00000164190|chr5:37048518-37048518|G/T|missense_variant	NIPBL|p.Q2202H|1|0.09|ENSG00000164190|chr5:37048518-37048518|G/T|missense_variant	NIPBL|p.Q2202H|1|0.09|ENSG00000164190|chr5:37048518-37048518|G/T|missense_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	564.786587	1127.55862	-0.68991	-0.00038965	2.0674	0.0011677	1.3775	0.00077801	564.7880976453489	89.453	0.55002	87.332	87.054	87.604	-2.1207	0.067628	0.00077591	NaN	19.36	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28464			11084	15430	9111	9121							-5.589329316535441E-05
FIHKIMVKIRF	11	Unmodified	_FIHKIMVKIRF_					0	0	0		tr|A0A553SSA0|A0A553SSA0_NIACIDUF2798domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02700PE=4SV=1	tr|A0A553SSA0|A0A553SSA0_NIACIDUF2798domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02700PE=4SV=1	tr|A0A553SSA0|A0A553SSA0_NIACIDUF2798domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02700PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.9581298828125	3	477.960087	1430.85843	-5.9329	-0.0028357	4.2291	0.0020213	-1.7038	-0.00081437	478.2967649500702	159.34	2.8374	157.75	156.72	159.56	-1.5858					174	71	3	0	0	0	0.72548	1	15744	15744		9.2118	0.41249	1	81225			11085	34349	9112	9122	11963	11963					0.16023702952224994
FIHLDPFGTS	10	Unmodified	_FIHLDPFGTS_					0	0	0		ENSG00000121486|ENST00000367506|TRMT1L;nc|ENSG00000121486|Q7Z2T5-2|TRMT1L	ENSG00000121486|ENST00000367506|TRMT1L	ENSG00000121486|ENST00000367506|TRMT1L	MULTI-MSMS	OvCa99_classI_Rep5	1	567.2881469726562	2	567.284931	1132.55531	1.3419	0.00076124	3.2317	0.0018333	4.5736	0.0025945	567.2866074321217	150.3	1.1983	150.3	149.7	150.89	0					50	23	3	0	0	0	0.66721	1	17590	17590		34.173	0	1	108990			11086	3487	9113	9123	11964	11964					-0.005665609023253637
FIHNGSVVPN	10	Unmodified	_FIHNGSVVPN_					0	0	0			REV__ENSG00000147912|ENST00000432825|FBXO10	REV__ENSG00000147912|ENST00000432825|FBXO10	MULTI-MSMS	OvCa99_classI_Rep5	1	542.2862548828125	2	542.282723	1082.55089	1.9509	0.0010579	3.8453	0.0020852	5.7962	0.0031432	542.2847300039213	77.627	1.4541	77.627	76.639	78.093	0					70	34	3	0	0	0	0.47131	1	7829	7829		58.246	4.8948	1	2182100	+		11087	20088	9114	9124	11965	11965					0.012919746747911631
FIHVIAII	8	Unmodified	_FIHVIAII_					0	0	0			REV__nc|ENSG00000163053|Q7RTX9-2|SLC16A14	REV__nc|ENSG00000163053|Q7RTX9-2|SLC16A14	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.29498291015625	2	463.297114	924.579674	-1.1189	-0.0005184	-2.4893	-0.0011533	-3.6083	-0.0016717	463.2960512598657	106.35	0.98132	104.33	104.05	105.03	-2.0161					27	18	2	0	0	0	0.58426	2	9690	9678;9690		67.327	11.823	1	106330	+		11088	20803	9115	9125	11966;11967	11967					0.1143674404183912
FIHVIAII	8	Unmodified	_FIHVIAII_					0	0	0			REV__nc|ENSG00000163053|Q7RTX9-2|SLC16A14	REV__nc|ENSG00000163053|Q7RTX9-2|SLC16A14	MULTI-MATCH	OvCa9_classI_Rep2	2		2	463.297114	924.579674	-0.6396	-0.00029633	-2.8605	-0.0013253	-3.5001	-0.0016216	463.2958893350946	104.65	0.8895	104.08	103.82	104.71	-0.57639	-0.1472	0.0005577	NaN	67.327	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97294	+		11089	20803	9115	9125							0.1143674404183912
FIHVIAII	8	Unmodified	_FIHVIAII_					0	0	0			REV__nc|ENSG00000163053|Q7RTX9-2|SLC16A14	REV__nc|ENSG00000163053|Q7RTX9-2|SLC16A14	MULTI-MATCH	OvCa9_classI_Rep3	3		2	463.297114	924.579674	0.32236	0.00014935	-4.5287	-0.0020981	-4.2064	-0.0019488	463.2950017480131	105.61	0.93699	104.26	103.99	104.93	-1.3482	0.037066	-0.00098805	NaN	67.327	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124610	+		11090	20803	9115	9125							0.1143674404183912
FIHVIAII	8	Unmodified	_FIHVIAII_					0	0	0			REV__nc|ENSG00000163053|Q7RTX9-2|SLC16A14	REV__nc|ENSG00000163053|Q7RTX9-2|SLC16A14	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	463.297114	924.579674	-1.1189	-0.0005184	-2.4893	-0.0011533	-3.6083	-0.0016717	463.2960512598657	106.35	0.98132	104.33	104.05	105.03	-2.0161	0.11013	0.00090164	NaN	67.327	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106330	+		11091	20803	9115	9125							0.1143674404183912
FIIALRGEP	9	Unmodified	_FIIALRGEP_					0	0	0			REV__nc|ENSG00000175193|Q9H300-2|PARL	REV__nc|ENSG00000175193|Q9H300-2|PARL	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.3143615722656	2	508.300384	1014.58622	-1.0068	-0.00051178	2.2188	0.0011278	1.212	0.00061605	508.3013365623077	103.58	0.79016	103	102.83	103.62	-0.57639					24	15	2	0	0	0	0.027448	1	9637	9637		44.117	5.3107	1	65313	+		11092	21879	9116	9126	11968	11968					0.07950637202566213
FIIALRGEP	9	Unmodified	_FIIALRGEP_					0	0	0			REV__nc|ENSG00000175193|Q9H300-2|PARL	REV__nc|ENSG00000175193|Q9H300-2|PARL	MULTI-MATCH	OvCa9_classI_Rep3	3		2	508.300384	1014.58622	0.025023	1.2719E-05	1.6407	0.00083397	1.6657	0.00084668	508.30101030262654	104.55	0.67352	103.12	102.86	103.54	-1.4347	0.018239	-0.0019022	NaN	44.117	24	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47801	+		11093	21879	9116	9126							0.07950637202566213
FIIDDRKML	9	Unmodified	_FIIDDRKML_					0	0	0		tr|A0A7D6VTS2|A0A7D6VTS2_9CLOTNitroreductasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17965PE=3SV=1	tr|A0A7D6VTS2|A0A7D6VTS2_9CLOTNitroreductasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17965PE=3SV=1	tr|A0A7D6VTS2|A0A7D6VTS2_9CLOTNitroreductasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17965PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	575.8140869140625	2	575.818084	1149.62162	1.841	0.0010601	-1.9114	-0.0011006	-0.070481	-4.0584E-05	575.8169394976684	95.403	1.0507	95.403	95.075	96.126	0					55	24	4	0	0	0	0.059253	1	10399	10399		113.41	24.769	1	1832700			11094	35136	9117	9127	11969	11969					0.05278931668067344
FIIDENTGDI	10	Unmodified	_FIIDENTGDI_					0	0	0		ENSG00000081138|ENST00000397968|CDH7	ENSG00000081138|ENST00000397968|CDH7	ENSG00000081138|ENST00000397968|CDH7	MULTI-MSMS	OvCa99_classI_Rep5	1	568.7799072265625	2	568.777136	1135.53972	1.871	0.0010642	2.3491	0.0013361	4.2201	0.0024003	568.7784685174931	129.24	1.455	129.24	128.88	130.34	0					59	30	4	0	0	0	0.42962	1	14982	14982		64.207	7.4862	1	516910			11095	1654	9118	9128	11970	11970					-0.022628922100466298
FIIDKDGNI	9	Unmodified	_FIIDKDGNI_					0	0	0		tr|A0A7D6VSV0|A0A7D6VSV0_9CLOTRedoxindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14265PE=4SV=1	tr|A0A7D6VSV0|A0A7D6VSV0_9CLOTRedoxindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14265PE=4SV=1	tr|A0A7D6VSV0|A0A7D6VSV0_9CLOTRedoxindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14265PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	517.7825927734375	2	517.779482	1033.54441	0.96124	0.00049771	2.7191	0.0014079	3.6803	0.0019056	517.7806052548968	149.75	1.3835	149.75	149.31	150.69	0					54	27	4	0	0	0	0.50149	1	17513	17513		42.396	4.5846	1	121020			11096	35061	9119	9129	11971	11971					0.028980367233771176
FIIDKDGNI	9	Unmodified	_FIIDKDGNI_					0	0	0		tr|A0A7D6VSV0|A0A7D6VSV0_9CLOTRedoxindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14265PE=4SV=1	tr|A0A7D6VSV0|A0A7D6VSV0_9CLOTRedoxindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14265PE=4SV=1	tr|A0A7D6VSV0|A0A7D6VSV0_9CLOTRedoxindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14265PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.325439453125	2	517.779482	1033.54441	1.2799	0.00066273	1.974	0.0010221	3.2539	0.0016848	517.7802214144344	67.986	2.5466	65.099	64.391	66.938	-2.8873					97	50	4	0	0	0	0.027455	1	3079	3079		34.173	0	1	58758			11097	35061	9119	9129	11972	11972					0.028980367233771176
FIIDNFQD	8	Unmodified	_FIIDNFQD_					0	0	0			REV__tr|A0A553SSG8|A0A553SSG8_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=celBPE=4SV=1	REV__tr|A0A553SSG8|A0A553SSG8_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=celBPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.7804260253906	2	506.242732	1010.47091	-0.39783	-0.0002014	-3.0231	-0.0015304	-3.421	-0.0017318	506.7422421524099	102.47	0.7885	100.27	100.1	100.88	-2.1994					19	14	2	0	0	0	0.028476	1	9287	9287		37.159	3.6435	1	16534	+		11098	30837	9120	9130	11973	11973					-0.033905117191011414
FIIFPGKWI	9	Unmodified	_FIIFPGKWI_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2;nc|ENSG00000135749|A6NKB5-2|PCNX2;ENST00000324142.4_1_1:233337898-233388268:-|nuORF	ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	MULTI-MSMS	OvCa99_classI_Rep5	1	560.830322265625	2	560.83132	1119.64809	2.6684	0.0014965	-4.0195	-0.0022543	-1.3511	-0.00075773	560.8289221837026	118	1.3072	118	117.6	118.91	0					56	27	4	0	0	0	0.42057	1	13508	13508		50.025	0.48849	1	1335500			11099	4411	9121	9131	11974	11974					0.09304988621715893
FIIGLFLPL	9	Unmodified	_FIIGLFLPL_					0	0	0		tr|A0A553SR72|A0A553SR72_NIACIDoxXfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00545PE=3SV=1	tr|A0A553SR72|A0A553SR72_NIACIDoxXfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00545PE=3SV=1	tr|A0A553SR72|A0A553SR72_NIACIDoxXfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00545PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.8314208984375	2	516.828246	1031.64194	-0.71152	-0.00036774	-3.6567	-0.0018899	-4.3682	-0.0022576	516.8261320487337	94.753	3.0151	92.285	91.96	94.975	-2.4685					139	59	3	0	0	0	0.02744	1	8381	8381		60.404	11.193	1	1439700			11100	34232	9122	9132	11975	11975					0.1273847039019529
FIIGQLEPK	9	Unmodified	_FIIGQLEPK_					0	0	0			REV__ENSG00000197437|ENST00000642119|OR13G1	REV__ENSG00000197437|ENST00000642119|OR13G1	MSMS	OvCa9_classI_Rep4_	4	522.8082275390625	2	522.808042	1043.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.97	1	118.63	118.13	119.13	-1.3444								0	0	0	0.15102	1	11273	11273		64.207	10.856	1		+		11101	22924	9123	9133	11976	11976					0.08147503999748551
FIIIFLRWS	9	Unmodified	_FIIIFLRWS_					0	0	0		AluSx3_dup2817|chr1:247098271-247098577:+|1.0433432231288329|0.445978079987771|1.23|429.0|14|1|anti-sense	AluSx3_dup2817|chr1:247098271-247098577:+|1.0433432231288329|0.445978079987771|1.23|429.0|14|1|anti-sense	AluSx3_dup2817|chr1:247098271-247098577:+|1.0433432231288329|0.445978079987771|1.23|429.0|14|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8563842773438	2	597.855327	1193.6961	-2.7036	-0.0016164	4.3745	0.0026153	1.6709	0.00099894	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.60342	1	12650	12650		31.53	2.3803	1	591030			11102	80	9124	9134	11977	11977					0.10700062541741318
FIILPLKKD	9	Unmodified	_FIILPLKKD_					0	0	0			REV__tr|A0A7D7A086|A0A7D7A086_9CLOTAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=accDPE=3SV=1	REV__tr|A0A7D7A086|A0A7D7A086_9CLOTAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=accDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.8494262695312	2	543.84971	1085.68487	-2.4975	-0.0013583	2.5455	0.0013843	0.047953	2.6079E-05	543.8507842433712	126.58	0.99275	125.17	124.97	125.96	-1.4143					36	19	3	0	0	0	0.56889	1	12061	12061		35.618	11.416	1	38736	+		11103	32441	9125	9135	11978	11978					0.1454524044761456
FIILVNTLL	9	Unmodified	_FIILVNTLL_					0	0	0			REV__tr|A0A553SGY1|A0A553SGY1_NIACIQuinoloxidasesubunit1OS=NialliacirculansOX=1397GN=qoxBPE=3SV=1	REV__tr|A0A553SGY1|A0A553SGY1_NIACIQuinoloxidasesubunit1OS=NialliacirculansOX=1397GN=qoxBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	523.2909545898438	2	523.336436	1044.65832	-2.6422	-0.0013828	2.1714	0.0011364	-0.47084	-0.00024641	523.3374500777497	141.76	1.3878	140.75	140.39	141.78	-1.0106					52	27	3	0	0	0	0.027093	1	11769	11769		120.62	12.533	1	39752	+		11104	29749	9126	9136	11979	11979					0.13777551556268008
FIINLLDQDG	10	Unmodified	_FIINLLDQDG_					0	0	0			REV__ENSG00000172986|ENST00000389617|GXYLT2	REV__ENSG00000172986|ENST00000389617|GXYLT2	MULTI-MSMS	OvCa9_classI_Rep2	2	574.2996826171875	2	574.303321	1146.59209	-0.32227	-0.00018508	-3.9222	-0.0022525	-4.2445	-0.0024376	574.3012965384783	30.687	0.83693	27.977	27.804	28.641	-2.7097					34	16	3	0	0	0	0.62299	1	883	883		39.253	5.0803	1	116960	+		11105	21740	9127	9137	11980	11980					0.024656909235773128
FIIPESINFI	10	Unmodified	_FIIPESINFI_					0	0	0			REV__tr|A0A7D6VR17|A0A7D6VR17_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=celBPE=4SV=1	REV__tr|A0A7D6VR17|A0A7D6VR17_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=celBPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	596.8353881835938	2	596.834257	1191.65396	2.038	0.0012164	-0.065853	-3.9303E-05	1.9722	0.0011771	596.834156842729	117.42	1.968	117.42	117.09	119.05	0					100	41	5	0	0	0	0.37436	1	13453	13453		71.877	4.9155	1	4303800	+		11106	31378	9128	9138	11981	11981					0.06580042342716297
FIIPFMLII	9	Unmodified	_FIIPFMLII_					0	0	0			REV__tr|A0A7D6ZE88|A0A7D6ZE88_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_12700PE=4SV=1	REV__tr|A0A7D6ZE88|A0A7D6ZE88_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_12700PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.3150634765625	2	553.837757	1105.66096	1.1858	0.00065674	2.9543	0.0016362	4.1401	0.0022929	554.3402956192054	113.95	0.99277	113.95	113.61	114.6	0					29	21	2	0	0	0	0.027462	1	13035	13035		39.021	11.139	1	108140	+		11107	31941	9129	9139	11982	11982					0.11235683689596954
FIIRQDAQP	9	Unmodified	_FIIRQDAQP_					0	0	0			REV__ENST00000369002.8_1_6:108227894-108227954:-|nuORF	REV__ENST00000369002.8_1_6:108227894-108227954:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	544.2998657226562	2	544.298373	1086.58219	-1.4048	-0.00076465	3.7923	0.0020641	2.3874	0.0012995	544.3002102005513	92.774	1.1692	90.813	90.56	91.729	-1.9617					64	23	4	0	0	0	0.29717	1	5916	5916		63.306	1.1989	1	877200	+		11108	24932	9130	9140	11983	11983					0.042365477088424086
FIISIVFVIVS	11	Unmodified	_FIISIVFVIVS_					0	0	0			REV__tr|A0A7D6ZFQ4|A0A7D6ZFQ4_9CLOTOligosaccharideflippasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18850PE=4SV=1	REV__tr|A0A7D6ZFQ4|A0A7D6ZFQ4_9CLOTOligosaccharideflippasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18850PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	412.92724609375	3	412.924925	1235.75295	3.0705	0.0012679	1.8872	0.00077926	4.9577	0.0020472	412.9250835867229	57.228	1.0137	54.078	53.461	54.475	-3.1504					42	32	2	0	0	0	0.72511	1	1664	1664		14.086	2.9893	1	24423	+		11109	31979	9131	9141	11984	11984					0.1445006530759656
FIISLAGVII	10	Unmodified	_FIISLAGVII_					0	0	0		tr|A0A7D6VPT4|A0A7D6VPT4_9CLOTDUF1189domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00190PE=4SV=1	tr|A0A7D6VPT4|A0A7D6VPT4_9CLOTDUF1189domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00190PE=4SV=1	tr|A0A7D6VPT4|A0A7D6VPT4_9CLOTDUF1189domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00190PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	523.3379516601562	2	523.336436	1044.65832	0.35575	0.00018618	1.6861	0.00088238	2.0418	0.0010686	523.3371871126451	141.61	2.3768	141.61	141.34	143.71	0					94	47	4	0	0	0	0.35697	1	16584	16584		73.975	7.5455	1	628400			11110	34796	9132	9142	11985	11985					0.13777551556268008
FIISPSEIAHN	11	Unmodified	_FIISPSEIAHN_					0	0	0		nc|ENSG00000069869|P46934-3|NEDD4;nc|ENSG00000069869|P46934-2|NEDD4;nc|ENSG00000069869|P46934|NEDD4	nc|ENSG00000069869|P46934-3|NEDD4	nc|ENSG00000069869|P46934-3|NEDD4	MSMS	OvCa99_classI_Rep5	1	409.8842468261719	3	409.883789	1226.62954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.313	1	88.313	87.813	88.813	0								0	0	0	0.19441	1	9386	9386		21.78	0	1				11111	14888	9133	9143	11986	11986					0.025287821892106876
FIISSGVIML	10	Unmodified	_FIISSGVIML_					0	0	0		tr|A0A553SFR4|A0A553SFR4_NIACIDUF1516familyproteinOS=NialliacirculansOX=1397GN=CEQ21_09360PE=4SV=1	tr|A0A553SFR4|A0A553SFR4_NIACIDUF1516familyproteinOS=NialliacirculansOX=1397GN=CEQ21_09360PE=4SV=1	tr|A0A553SFR4|A0A553SFR4_NIACIDUF1516familyproteinOS=NialliacirculansOX=1397GN=CEQ21_09360PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3088989257812	2	540.312103	1078.60965	-2.0627	-0.0011145	-4.4327	-0.002395	-6.4954	-0.0035095	540.3096376945349	119.42	3.6472	118.08	117.68	121.33	-1.3444					173	70	5	0	0	0	0.50656	1	11284	11284		53.351	3.9099	1	472280			11112	33067	9134	9144	11987	11987					0.07349314924863393
FIITITMAGL	10	Unmodified	_FIITITMAGL_					0	0	0		tr|A0A553SHR8|A0A553SHR8_NIACICarbonstarvationproteinAOS=NialliacirculansOX=1397GN=CEQ21_13485PE=3SV=1	tr|A0A553SHR8|A0A553SHR8_NIACICarbonstarvationproteinAOS=NialliacirculansOX=1397GN=CEQ21_13485PE=3SV=1	tr|A0A553SHR8|A0A553SHR8_NIACICarbonstarvationproteinAOS=NialliacirculansOX=1397GN=CEQ21_13485PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3094482421875	2	540.312103	1078.60965	-2.1488	-0.001161	-4.1878	-0.0022627	-6.3367	-0.0034238	540.3097600180628	118.45	2.7194	118.3	117.89	120.61	-0.14755					130	54	4	0	0	0	0.3976	1	11458	11458		68.787	4.5796	1	293380			11113	33301	9135	9145	11988	11988					0.07349314924863393
FIITITMAGL	10	Unmodified	_FIITITMAGL_					0	0	0		tr|A0A553SHR8|A0A553SHR8_NIACICarbonstarvationproteinAOS=NialliacirculansOX=1397GN=CEQ21_13485PE=3SV=1	tr|A0A553SHR8|A0A553SHR8_NIACICarbonstarvationproteinAOS=NialliacirculansOX=1397GN=CEQ21_13485PE=3SV=1	tr|A0A553SHR8|A0A553SHR8_NIACICarbonstarvationproteinAOS=NialliacirculansOX=1397GN=CEQ21_13485PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3079833984375	2	540.312103	1078.60965	-2.0627	-0.0011145	-4.4327	-0.002395	-6.4954	-0.0035095	540.3096376945349	119.42	3.6472	118.08	117.68	121.33	-1.3444					173	70	5	0	0	0	0.24387	1	11345	11345		87.754	10.98	1	472280			11114	33301	9135	9145	11989	11989					0.07349314924863393
FIIVLPRQL	9	Unmodified	_FIIVLPRQL_					0	0	0			REV__ENSG00000174145|ENST00000309447|NWD2	REV__ENSG00000174145|ENST00000309447|NWD2	MULTI-MSMS	OvCa9_classI_Rep2	2	549.8552856445312	2	549.855327	1097.6961	1.0643	0.00058521	-1.2465	-0.00068539	-0.18218	-0.00010017	549.8544457110994	131.23	2.0182	131	130.65	132.67	-0.22696					85	40	4	0	0	0	0.44294	1	12929	12929		47.916	3.7988	1	157210	+		11115	21813	9136	9146	11990	11990					0.15116062541756037
FIIVSGHDL	9	Unmodified	_FIIVSGHDL_					0	0	0		tr|A0A7D6ZRA0|A0A7D6ZRA0_9CLOTHydroxylaminereductaseOS=ClostridiumintestinaleOX=36845GN=hcpPE=3SV=1	tr|A0A7D6ZRA0|A0A7D6ZRA0_9CLOTHydroxylaminereductaseOS=ClostridiumintestinaleOX=36845GN=hcpPE=3SV=1	tr|A0A7D6ZRA0|A0A7D6ZRA0_9CLOTHydroxylaminereductaseOS=ClostridiumintestinaleOX=36845GN=hcpPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.8068542480469	2	500.776742	999.538931	1.7558	0.00087925	-2.1437	-0.0010735	-0.38796	-0.00019428	500.77456024298726	128.25	0.84126	128.25	127.86	128.7	0					29	17	3	0	0	0	0.027456	1	14822	14822		47.916	11.469	1	51618			11116	35712	9137	9147	11991	11991					0.03914357931569157
FIKAVPQSP	9	Unmodified	_FIKAVPQSP_					0	0	0		nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.786865234375	2	493.78711	985.559667	0.40814	0.00020153	-0.78909	-0.00038964	-0.38096	-0.00018811	493.786533625888	123	1.5868	121.63	121.36	122.94	-1.3666					76	31	4	0	0	0	0.2422	1	11662	11662		69.628	8.6557	1	252900			11117	3916	9138	9148	11992	11992					0.06630948311226348
FIKAYKKF	8	Unmodified	_FIKAYKKF_					0	0	0		nc|ENSG00000173575|O14647-2|CHD2;ENSG00000173575|ENST00000394196|CHD2	nc|ENSG00000173575|O14647-2|CHD2	nc|ENSG00000173575|O14647-2|CHD2	MULTI-MSMS	OvCa9_classI_Rep2	2	522.8118286132812	2	522.81567	1043.61679	-1.291	-0.00067494	-1.4463	-0.00075614	-2.7373	-0.0014311	522.814957070394	118.97	0.69121	118.82	118.58	119.27	-0.14755					29	13	3	0	0	0	0.68312	1	11436	11436		46.766	4.3703	1	61398			11118	7391	9139	9149	11993	11993					0.09672415587579053
FIKETFLI	8	Unmodified	_FIKETFLI_					0	0	0			REV__tr|A0A553SMP9|A0A553SMP9_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22990PE=3SV=1	REV__tr|A0A553SMP9|A0A553SMP9_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22990PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.82659912109375	2	505.799686	1009.58482	-1.4032	-0.00070974	-2.159	-0.001092	-3.5622	-0.0018017	505.7983658219153	77.217	1.0742	74.846	74.453	75.527	-2.3715					45	20	3	0	0	0	0.028476	1	4070	4070		45.952	7.1458	1	219610	+		11119	30357	9140	9150	11994	11994					0.080410031138058
FIKFFMII	8	Unmodified	_FIKFFMII_					0	0	0			REV__tr|A0A7D6VQ35|A0A7D6VQ35_9CLOTGlycosyltransferasefamily39proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18675PE=4SV=1	REV__tr|A0A7D6VQ35|A0A7D6VQ35_9CLOTGlycosyltransferasefamily39proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18675PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.8110961914062	2	529.808999	1057.60345	-0.58449	-0.00030967	-2.936	-0.0015555	-3.5205	-0.0018652	529.807658457611	104.6	3.6666	104.6	104.15	107.82	0					240	84	6	0	0	0	0.59103	1	11892	11892		65.897	9.1764	1	177490000	+		11120	31295	9141	9151	11995	11995					0.07694841483998971
FIKGHLKY	8	Unmodified	_FIKGHLKY_					0	0	0		tr|A0A7D6ZWJ1|A0A7D6ZWJ1_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18020PE=3SV=1	tr|A0A7D6ZWJ1|A0A7D6ZWJ1_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18020PE=3SV=1	tr|A0A7D6ZWJ1|A0A7D6ZWJ1_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18020PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.2850036621094	2	503.297645	1004.58074	2.8711	0.001445	-2.4851	-0.0012507	0.38604	0.00019429	503.29563944978094	115.94	0.23004	115.94	115.82	116.05	0					9	4	3	0	0	0	0.028476	1	13245	13245		21.702	1.2205	1	33017			11121	35843	9142	9152	11996	11996					0.0786295841073752
FIKGYPITL	9	Unmodified	_FIKGYPITL_					0	0	0		ENST00000370331.5_1_1:93169133-93170263:-|nuORF	ENST00000370331.5_1_1:93169133-93170263:-|nuORF	ENST00000370331.5_1_1:93169133-93170263:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	526.3146362304688	2	526.312961	1050.61137	0.91829	0.00048331	2.2599	0.0011894	3.1782	0.0016727	526.3139752685214	125.3	2.0349	124.25	123.69	125.72	-1.0519					99	38	3	0	0	0	0.50149	2	9793	9768;9793		42.396	3.1433	1	239120			11122	10924	9143	9153	11997;11998	11998					0.08808692005140983
FIKHTKCP	8	Unmodified	_FIKHTKCP_					0	0	0			REV__ENST00000318602.11_1_12:9232294-9232396:-|nuORF	REV__ENST00000318602.11_1_12:9232294-9232396:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.3052978515625	2	487.26803	972.521507	-2.2926	-0.0011171	4.4093	0.0021485	2.1167	0.0010314	487.27017643386034	126.26	0.83515	124.84	124.63	125.46	-1.4143					24	16	2	0	0	0	0.028476	1	12076	12076		52.299	15.271	1	28714	+		11123	24425	9144	9154	11999	11999					0.03414739124900734
FIKKDLYL	8	Unmodified	_FIKKDLYL_					0	0	0			REV__tr|A0A7D6VSG0|A0A7D6VSG0_9CLOTDipeptidyl-peptidaseIVOS=ClostridiumintestinaleOX=36845GN=HZF06_09070PE=4SV=1	REV__tr|A0A7D6VSG0|A0A7D6VSG0_9CLOTDipeptidyl-peptidaseIVOS=ClostridiumintestinaleOX=36845GN=HZF06_09070PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2699584960938	2	520.312961	1038.61137	2.3309	0.0012128	-1.161	-0.0006041	1.1699	0.00060869	520.3110933508312	90.156	0.65716	90.156	89.804	90.462	0					34	15	3	0	0	0	0.028476	1	9631	9631		44.117	1.7207	1	213080	+		11124	31498	9145	9155	12000	12000					0.0936069200511156
FIKKDLYL	8	Unmodified	_FIKKDLYL_					0	0	0			REV__tr|A0A7D6VSG0|A0A7D6VSG0_9CLOTDipeptidyl-peptidaseIVOS=ClostridiumintestinaleOX=36845GN=HZF06_09070PE=4SV=1	REV__tr|A0A7D6VSG0|A0A7D6VSG0_9CLOTDipeptidyl-peptidaseIVOS=ClostridiumintestinaleOX=36845GN=HZF06_09070PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	520.312961	1038.61137	1.3494	0.00070212	-4.3656	-0.0022715	-3.0162	-0.0015694	520.3106109931804	91.577	2.3311	90.341	88.995	91.326	-1.2355	0.092565	-0.00034822	NaN	44.117	68	44	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26918	+		11125	31498	9145	9155							0.0936069200511156
FIKKRITSS	9	Unmodified	_FIKKRITSS_					0	0	0			REV__ENSG00000135842|ENST00000367511|NIBAN1	REV__ENSG00000135842|ENST00000367511|NIBAN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3317260742188	2	540.332216	1078.64988	0.34656	0.00018726	-4.1131	-0.0022225	-3.7666	-0.0020352	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.68424	1	13655	13655		21.96	1.9631	1	342200	+		11126	19328	9146	9156	12001	12001					0.11369997639667417
FIKLKNDE	8	Unmodified	_FIKLKNDE_					0	0	0			REV__tr|A0A7D6VPJ6|A0A7D6VPJ6_9CLOTAminotransferaseclassIVOS=ClostridiumintestinaleOX=36845GN=HZF06_17090PE=3SV=1	REV__tr|A0A7D6VPJ6|A0A7D6VPJ6_9CLOTAminotransferaseclassIVOS=ClostridiumintestinaleOX=36845GN=HZF06_17090PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	503.7785949707031	2	503.782025	1005.5495	-3.0867	-0.001555	-3.4935	-0.00176	-6.5803	-0.003315	503.78006253314857	36.309	2.2758	33.6	32.75	35.026	-2.7097					126	45	4	0	0	0	0.67745	2	1569	1522;1569		47.916	7.343	1	296190	+		11127	31252	9147	9157	12002;12003	12003					0.046943405859906306
FIKLRMILS	9	Unmodified	_FIKLRMILS_					0	0	0		L1M3_dup291|chr1:173794566-173795729:+|1.281363593639287|0.3648644439828962|1.81|429.0|74|2|anti-sense	L1M3_dup291|chr1:173794566-173795729:+|1.281363593639287|0.3648644439828962|1.81|429.0|74|2|anti-sense	L1M3_dup291|chr1:173794566-173795729:+|1.281363593639287|0.3648644439828962|1.81|429.0|74|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	560.7905883789062	2	560.849187	1119.68382	0.77773	0.00043619	2.5173	0.0014118	3.2951	0.001848	560.8504545261201	64.871	0.78032	62.147	61.811	62.591	-2.7245					34	14	3	0	0	0	0.027462	1	4942	4942		24.519	0	1	84664			11128	14553	9148	9158	12004	12004					0.1287670280707971
FIKLYEAGLAY	11	Unmodified	_FIKLYEAGLAY_					0	0	0		LARS2|p.N483Kfs*43|1|0.05|ENSG00000011376|chr3:45491725-45491726|-/G|frameshift_variant;LARS2|p.H576Ifs*58|1|0.04|ENSG00000011376|chr3:45500545-45500545|C/-|frameshift_variant;ENSG00000011376|ENST00000645846|LARS2	LARS2|p.N483Kfs*43|1|0.05|ENSG00000011376|chr3:45491725-45491726|-/G|frameshift_variant	LARS2|p.N483Kfs*43|1|0.05|ENSG00000011376|chr3:45491725-45491726|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	644.3489990234375	2	644.352814	1286.69108	-6.1065	-0.0039348	1.4032	0.00090418	-4.7033	-0.0030306	644.3535517231257	156.22	1.1461	155.15	154.82	155.96	-1.073					70	25	4	0	0	0	0.71191	1	13423	13423		25.574	1.0549	1	162170			11129	963	9149	9159	12005	12005					0.059197138884883316
FIKNSKLCL	9	Unmodified	_FIKNSKLCL_					0	0	0			REV__ENSG00000188993|ENST00000682860|LRRC66	REV__ENSG00000188993|ENST00000682860|LRRC66	MULTI-MSMS	OvCa99_classI_Rep5	1	533.3092041015625	2	533.309895	1064.60524	1.2228	0.00065211	1.0601	0.00056536	2.2829	0.0012175	533.3102475557516	145.84	0.74811	145.84	145.53	146.28	0					29	14	3	0	0	0	0.55588	1	17067	17067		37.159	1.5408	1	137540	+		11130	22752	9150	9160	12006	12006					0.07551850501954505
FIKSERSII	9	Unmodified	_FIKSERSII_					0	0	0		nc|ENSG00000121753|O60241-4|ADGRB2;nc|ENSG00000121753|O60241-3|ADGRB2;nc|ENSG00000121753|O60241-2|ADGRB2;ENSG00000121753|ENST00000373658|ADGRB2	nc|ENSG00000121753|O60241-4|ADGRB2	nc|ENSG00000121753|O60241-4|ADGRB2	MULTI-MSMS	OvCa99_classI_Rep5	1	546.8252563476562	2	546.824224	1091.63389	0.3645	0.00019932	-1.1854	-0.00064821	-0.8209	-0.00044889	546.8233877582097	66.773	0.64192	66.773	66.531	67.173	0					22	15	2	0	0	0	0.3249	1	6218	6218		60.118	1.3363	1	998110			11131	3498	9151	9161	12007	12007					0.09174291402769086
FIKSRFKM	8	Unmodified	_FIKSRFKM_					0	0	0		tr|A0A553SI04|A0A553SI04_NIACIThiolreductantABCexportersubunitCydCOS=NialliacirculansOX=1397GN=cydCPE=4SV=1	tr|A0A553SI04|A0A553SI04_NIACIThiolreductantABCexportersubunitCydCOS=NialliacirculansOX=1397GN=cydCPE=4SV=1	tr|A0A553SI04|A0A553SI04_NIACIThiolreductantABCexportersubunitCydCOS=NialliacirculansOX=1397GN=cydCPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	528.8060913085938	2	528.80478	1055.59501	0.16667	8.8138E-05	1.0466	0.00055342	1.2132	0.00064156	528.8052832238033	86.997	1.5544	85.565	85.122	86.676	-1.4311					69	30	3	0	0	0	0.73205	1	7573	7573		35.618	6.4482	1	385910			11132	33332	9152	9162	12008	12008					0.06943287567401057
FIKTLTFLL	9	Unmodified	_FIKTLTFLL_					0	0	0		chr13:43055543-43068930|206|12.42|0.22|5.85|+|1|TE_info:LTR19C,LTR19C_dup94,ERV1,LTR,donor,+,43054751,43055543|None,DNAJC15|15;chr13:43055543-43065686|272|14.97|0.22|6.11|+|1|TE_info:LTR19C,LTR19C_dup94,ERV1,LTR,donor,+,43054751,43055543|None,DNAJC15|15	chr13:43055543-43068930|206|12.42|0.22|5.85|+|1|TE_info:LTR19C,LTR19C_dup94,ERV1,LTR,donor,+,43054751,43055543|None,DNAJC15|15	chr13:43055543-43068930|206|12.42|0.22|5.85|+|1|TE_info:LTR19C,LTR19C_dup94,ERV1,LTR,donor,+,43054751,43055543|None,DNAJC15|15	MULTI-MSMS	OvCa99_classI_Rep5	1	548.342041015625	2	548.344261	1094.67397	0.84752	0.00046473	4.0722	0.0022329	4.9197	0.0026977	548.34630473212	154.14	1.4394	154.14	153.78	155.22	0					75	28	4	0	0	0	0.50149	1	18149	18149		42.396	3.59	1	385030			11133	335	9153	9163	12009	12009					0.1304183807330901
FILAERAR	8	Unmodified	_FILAERAR_					0	0	0		nc|ENSG00000134042|Q9BYG7-6|MRO;nc|ENSG00000134042|Q9BYG7-2|MRO;ENSG00000134042|ENST00000398439|MRO;nc|ENSG00000134042|Q9BYG7-5|MRO	nc|ENSG00000134042|Q9BYG7-6|MRO	nc|ENSG00000134042|Q9BYG7-6|MRO	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.2644348144531	2	488.290351	974.566149	1.4635	0.00071461	-2.5291	-0.0012349	-1.0656	-0.00052034	488.2893873281165	83.663	0.50185	83.663	83.463	83.965	0					21	11	3	0	0	0	0.028476	1	8732	8732		40.573	17.53	1	327470			11134	4254	9154	9164	12010	12010					0.0778488626260696
FILALRRTN	9	Unmodified	_FILALRRTN_					0	0	0			REV__ENST00000556605.5_1_14:69928765-69928918:+|nuORF	REV__ENST00000556605.5_1_14:69928765-69928918:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	552.3375854492188	2	552.337833	1102.66111	2.319	0.0012808	-0.61536	-0.00033989	1.7036	0.00094096	552.3374622889943	84.321	0.66484	84.321	84.051	84.716	0					36	15	3	0	0	0	0.40667	1	8792	8792		51.335	0.14276	1	4379600	+		11135	27565	9155	9165	12011	12011					0.11388819733792843
FILCHGILN	9	Unmodified	_FILCHGILN_					0	0	0		NCKAP1|p.R611Efs*31|1|0.04|ENSG00000061676|chr2:182962210-182962210|A/-|frameshift_variant;ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	NCKAP1|p.R611Efs*31|1|0.04|ENSG00000061676|chr2:182962210-182962210|A/-|frameshift_variant	NCKAP1|p.R611Efs*31|1|0.04|ENSG00000061676|chr2:182962210-182962210|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	515.283447265625	2	515.281137	1028.54772	0.94125	0.00048501	1.2313	0.00063447	2.1726	0.0011195	515.2818157223961	106.61	4.2629	105.34	104.28	108.54	-1.267					165	82	5	0	0	0	0.71234	1	7584	7584		13.775	2.2643	1	4317700			11136	1272	9156	9166	12012	12012					0.03459008296408683
FILCLLCMLI	10	Carbamidomethyl (C)	_FILC(Carbamidomethyl (C))LLCMLI_	FILC(0.989)LLC(0.011)MLI		FILC(20)LLC(-20)MLI		0	1	0			REV__ENST00000510568.1_1_4:1235165-1235387:-|nuORF	REV__ENST00000510568.1_1_4:1235165-1235387:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	619.8416748046875	2	619.839116	1237.66368	0.55425	0.00034355	2.5542	0.0015832	3.1085	0.0019268	619.8406269100077	152.43	1.9041	152.43	151.97	153.88	0					79	42	2	0	0	0	0.49566	1	17883	17883		54.765	6.8051	2	1109600	+		11137	26944	9157	9167	12013	12013	333				0.05435447760578427
FILDHHILL	9	Unmodified	_FILDHHILL_					0	0	0			REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|306|2|anti-sense	REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|306|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	560.8295288085938	2	560.829309	1119.64407	-0.71531	-0.00040117	0.30055	0.00016856	-0.41477	-0.00023261	560.8293916252003	117.33	1.3385	117.2	116.91	118.25	-0.12868					61	26	4	0	0	0	0.32337	1	11227	11227		60.294	5.5176	1	140130	+		11138	28499	9158	9168	12014	12014					0.08902899127997443
FILDTMKETN	10	Unmodified	_FILDTMKETN_					0	0	0		nc|ENSG00000135457|Q12800-2|TFCP2;nc|ENSG00000135457|Q12800-4|TFCP2	nc|ENSG00000135457|Q12800-2|TFCP2	nc|ENSG00000135457|Q12800-2|TFCP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.5182800292969	3	404.537401	1210.59037	1.0179	0.0004118	-2.4132	-0.00097621	-1.3952	-0.00056442	404.53605546034544	35.47	0.27287	35.47	35.293	35.566	0					8	5	2	0	0	0	0.026867	1	1804	1804		39.873	20.61	1	11036			11139	15032	9159	9169	12015	12015					-0.006496861566802181
FILEQGLMS	9	Unmodified	_FILEQGLMS_					0	0	0		ZIK1|p.S298Mfs*218|1|0.03|ENSG00000171649|chr19:57590701-57590702|-/TATGTATATTTCAT|frameshift_variant;ENST00000343280.8_1_19:57984577-57985306:-|nuORF	ZIK1|p.S298Mfs*218|1|0.03|ENSG00000171649|chr19:57590701-57590702|-/TATGTATATTTCAT|frameshift_variant	ZIK1|p.S298Mfs*218|1|0.03|ENSG00000171649|chr19:57590701-57590702|-/TATGTATATTTCAT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.8422241210938	2	519.270435	1036.52632	-0.8173	-0.0004244	-1.5569	-0.00080844	-2.3742	-0.0012328	519.268467272917	104.15	0.15708	102.04	101.96	102.11	-2.1192					4	2	2	0	0	0	0.027433	1	9429	9429		42.396	5.237	1	4141.9			11140	10596	9160	9170	12016	12016					0.009515784770201208
FILFLRRFWWR	11	Unmodified	_FILFLRRFWWR_					0	0	0			REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	547.65185546875	3	547.317262	1638.92996	-0.091769	-5.0227E-05	-3.1774	-0.001739	-3.2692	-0.0017893	547.3155019587158	21.641	0.35012	21.641	21.477	21.827	0					20	12	2	0	0	0	0.72582	1	129	129		0.3405	0.3405	1	40465	+		11141	24117	9161	9171	12017	12017					0.13604958701102987
FILGLSGLAFL	11	Unmodified	_FILGLSGLAFL_					0	0	0			REV__ENSG00000155957|ENST00000358230|TMBIM4	REV__ENSG00000155957|ENST00000358230|TMBIM4	MULTI-MSMS	OvCa9_classI_Rep3	3	575.842529296875	2	575.847167	1149.67978	-4.018	-0.0023138	-2.943	-0.0016947	-6.9609	-0.0040084	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.72459	1	12227	12227		20.947	0.95016	1	445630	+		11142	20450	9162	9172	12018	12018					0.11092936585009738
FILGLSLSPS	10	Unmodified	_FILGLSLSPS_					0	0	0		ENST00000261263.4_1_12:72148721-72148823:+|nuORF	ENST00000261263.4_1_12:72148721-72148823:+|nuORF	ENST00000261263.4_1_12:72148721-72148823:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.8314208984375	2	517.30005	1032.58555	-0.73793	-0.00038173	1.0363	0.00053607	0.29836	0.00015434	517.3004054398651	94.791	1.202	92.322	92.06	93.262	-2.4685					28	23	2	0	0	0	0.02661	1	8381	8381		49.442	15.269	1	82172			11143	9861	9163	9173	12019	12019					0.07055797762859584
FILKCVNLL	9	Unmodified	_FILKCVNLL_					0	0	0			REV__nc|ENSG00000118690|Q8NEN0-2|ARMC2	REV__nc|ENSG00000118690|Q8NEN0-2|ARMC2	MSMS	OvCa9_classI_Rep4_	4	531.8174438476562	2	531.822638	1061.63072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	160.3	1	158.69	158.19	159.19	-1.6101								0	0	0	0.24372	1	15831	15831		19.36	1.0356	1		+		11144	18411	9164	9174	12020	12020					0.10237325024377242
FILLPLLLC	9	Unmodified	_FILLPLLLC_					0	0	0			REV__ENST00000574437.5_2_17:1028979-1029078:-|nuORF	REV__ENST00000574437.5_2_17:1028979-1029078:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8010864257812	2	522.829932	1043.64531	1.1322	0.00059197	2.0586	0.0010763	3.1908	0.0016683	522.8307022532608	118.85	0.28561	118.85	118.72	119.01	0					8	5	2	0	0	0	0.027462	1	13642	13642		21.702	0	1	24148	+		11145	27766	9165	9175	12021	12021					0.12523397172549267
FILLRKHE	8	Unmodified	_FILLRKHE_					0	0	0		tr|A0A7D6W035|A0A7D6W035_9CLOTGamma-glutamylphosphatereductaseOS=ClostridiumintestinaleOX=36845GN=proAPE=3SV=1	tr|A0A7D6W035|A0A7D6W035_9CLOTGamma-glutamylphosphatereductaseOS=ClostridiumintestinaleOX=36845GN=proAPE=3SV=1	tr|A0A7D6W035|A0A7D6W035_9CLOTGamma-glutamylphosphatereductaseOS=ClostridiumintestinaleOX=36845GN=proAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	528.3195190429688	2	528.321651	1054.62875	-0.78738	-0.00041599	-3.6781	-0.0019432	-4.4655	-0.0023592	528.3196241807325	37.706	0.62994	37.706	37.531	38.161	0					25	13	4	0	0	0	0.73288	1	2089	2089		35.201	5.3592	1	226740			11146	35371	9166	9176	12022	12022					0.10362032330795046
FILLTSLSMSF	11	Oxidation (M)	_FILLTSLSM(Oxidation (M))SF_		FILLTSLSM(1)SF		FILLTSLSM(52)SF	0	0	1			REV__L1MB3_dup16926|chr22:15811040-15811839:+|1.0764931184738016|0.3095763404933719|1.8|423.0|57|3|anti-sense	REV__L1MB3_dup16926|chr22:15811040-15811839:+|1.0764931184738016|0.3095763404933719|1.8|423.0|57|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	425.5626220703125	3	425.561547	1273.66281	1.0852	0.00046181	2.7375	0.001165	3.8227	0.0016268	425.56271987767565	69.963	3.6895	67.243	66.706	70.396	-2.7196					254	73	5	0	0	0	0.52474	1	3198	3198		51.528	6.5056	1	1255000	+		11147	28417	9167	9177	12023	12023		624			0.03692647916841452
FILLVSLRS	9	Unmodified	_FILLVSLRS_					0	0	0			REV__L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|157|1|anti-sense	REV__L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|157|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2627563476562	2	524.331685	1046.64882	1.6828	0.00088235	-0.66566	-0.00034903	1.0172	0.00053332	524.8327903719387	136.8	0.43144	136.8	136.54	136.97	0					9	8	2	0	0	0	0.027462	1	15924	15924		51.335	7.2187	1	16665	+		11148	28517	9168	9178	12024	12024					0.12735783270727552
FILNLKKLN	9	Unmodified	_FILNLKKLN_					0	0	0		tr|A0A7D6ZIJ1|A0A7D6ZIJ1_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_07205PE=4SV=1	tr|A0A7D6ZIJ1|A0A7D6ZIJ1_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_07205PE=4SV=1	tr|A0A7D6ZIJ1|A0A7D6ZIJ1_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_07205PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	551.8519897460938	2	551.852784	1101.69102	2.1122	0.0011656	-0.1579	-8.714E-05	1.9543	0.0010785	551.8526094754586	91.669	1.9925	91.669	90.976	92.968	0					147	47	5	0	0	0	0.18193	1	9962	9962		79.451	2.6769	1	12124000			11149	35615	9169	9179	12025	12025					0.1442375867914052
FILQNLGLL	9	Unmodified	_FILQNLGLL_					0	0	0		nc|ENSG00000196950|Q9ULF5-2|SLC39A10;ENST00000430412.5_1_2:196521853-196599762:+|nuORF;ENSG00000196950|ENST00000359634|SLC39A10	nc|ENSG00000196950|Q9ULF5-2|SLC39A10	nc|ENSG00000196950|Q9ULF5-2|SLC39A10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.8225708007812	2	515.81841	1029.62227	-1.6041	-0.00082743	-0.59559	-0.00030722	-2.1997	-0.0011346	515.8172042165755	119.81	0.42065	118.47	118.3	118.72	-1.3444					16	7	3	0	0	0	0.027462	1	11276	11276		26.796	0	1	30466			11150	8663	9170	9180	12026	12026					0.10864094379417111
FILSKGYEM	9	Unmodified	_FILSKGYEM_					0	0	0		ENSG00000198173|ENST00000358047|FAM47C;nc|ENSG00000174678|A6NHR8|FAM47DP;ENSG00000185448|ENST00000346193|FAM47A	ENSG00000198173|ENST00000358047|FAM47C	ENSG00000198173|ENST00000358047|FAM47C	MULTI-MSMS	OvCa99_classI_Rep5	1	544.2774658203125	2	544.27826	1086.54197	0.90066	0.00049021	-3.6022	-0.0019606	-2.7015	-0.0014704	544.2753070685458	151.03	0.6041	151.03	150.64	151.25	0					21	11	3	0	0	0	0.33652	1	17685	17685		58.782	2.0609	1	106010			11151	8792	9171	9181	12027	12027					0.002158649940838586
FILVVPLSLIL	11	Unmodified	_FILVVPLSLIL_					0	0	0		ENSG00000204657|ENST00000641840|OR2H2	ENSG00000204657|ENST00000641840|OR2H2	ENSG00000204657|ENST00000641840|OR2H2	MULTI-MSMS	OvCa9_classI_Rep2	2	409.60797119140625	3	409.608937	1225.80498	0.6889	0.00028218	-3.0246	-0.0012389	-2.3357	-0.00095672	409.60766459120623	104.29	12.102	103.72	103.28	115.38	-0.57639					699	244	5	0	0	0	0.63561	2	9883	9883;9961		41.427	7.505	1	1628000			11152	9017	9172	9182	12028;12029	12028					0.20111228721384578
FILVVPLSLIL	11	Unmodified	_FILVVPLSLIL_					0	0	0		ENSG00000204657|ENST00000641840|OR2H2	ENSG00000204657|ENST00000641840|OR2H2	ENSG00000204657|ENST00000641840|OR2H2	MULTI-MSMS	OvCa9_classI_Rep3	3	409.6073913574219	3	409.608937	1225.80498	1.1396	0.00046679	-3.5153	-0.0014399	-2.3757	-0.00097312	409.6074659919173	107.95	5.8573	106.76	106.27	112.13	-1.1978					409	114	4	0	0	0	0.4646	2	7807	7807;8021		56.434	8.4743	1	1037400			11153	9017	9172	9182	12030;12031	12030					0.20111228721384578
FILVVPLSLIL	11	Unmodified	_FILVVPLSLIL_					0	0	0		ENSG00000204657|ENST00000641840|OR2H2	ENSG00000204657|ENST00000641840|OR2H2	ENSG00000204657|ENST00000641840|OR2H2	MULTI-MSMS	OvCa9_classI_Rep4_	4	409.6079406738281	3	409.608937	1225.80498	0.55096	0.00022568	-3.0159	-0.0012353	-2.4649	-0.0010097	409.60762934156605	108.64	8.1164	106.92	106.42	114.53	-1.7256					461	158	5	0	0	0	0.68757	1	10186	10186		33.922	1.1711	1	863570			11154	9017	9172	9182	12032	12032					0.20111228721384578
FIMDLPQQF	9	Unmodified	_FIMDLPQQF_					0	0	0		ENSG00000073734|ENST00000650372|ABCB11	ENSG00000073734|ENST00000650372|ABCB11	ENSG00000073734|ENST00000650372|ABCB11	MULTI-SECPEP	OvCa9_classI_Rep2	2	569.8329467773438	2	569.78371	1137.55287	-0.79304	-0.00045186	-0.29399	-0.00016751	-1.087	-0.00061937	569.7846978543483	98.182	0.29082	97.289	97.168	97.459	-0.89305					9	5	2	0	0	0	0.027462	1	8907	8907		38.806	13.232	1	22057			11155	1499	9173	9183	12033	12033					-0.010407326316681065
FIMEERTRM	9	Oxidation (M)	_FIMEERTRM(Oxidation (M))_		FIM(0.001)EERTRM(0.999)		FIM(-32)EERTRM(32)	0	0	1			REV__ENST00000553956.6_1_17:62527116-62533894:+|nuORF	REV__ENST00000553956.6_1_17:62527116-62533894:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	615.2952880859375	2	614.794283	1227.57401	0.86617	0.00053252	-2.9247	-0.0017981	-2.0585	-0.0012655	614.7914263772204	152.96	1.3528	152.96	152.57	153.93	0					69	29	4	0	0	0	0.42676	1	17916	17916		49.442	12.282	2	221330	+		11156	23554	9174	9184	12034	12034		550			-0.03067090594458932
FIMGIRRR	8	Unmodified	_FIMGIRRR_					0	0	0			REV__tr|A0A553SR16|A0A553SR16_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00145PE=3SV=1	REV__tr|A0A553SR16|A0A553SR16_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00145PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.2845458984375	2	524.81347	1047.61239	-0.042599	-2.2356E-05	-1.6912	-0.00088754	-1.7338	-0.0009099	525.3155818923791	114.9	0.20985	113.51	113.41	113.62	-1.3977					5	3	2	0	0	0	0.028476	1	10694	10694		28.254	19.432	1	5187.6	+		11157	30681	9175	9185	12035	12035					0.09048627893048433
FIMGIRRR	8	Unmodified	_FIMGIRRR_					0	0	0			REV__tr|A0A553SR16|A0A553SR16_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00145PE=3SV=1	REV__tr|A0A553SR16|A0A553SR16_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00145PE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	524.81347	1047.61239	2.0719	0.0010874	-4.0869	-0.0021448	-2.0149	-0.0010575	524.8112468593621	113.38	0.36343	113.38	113.11	113.47	0	-0.064089	-0.00043844	NaN	28.254	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75833	+		11158	30681	9175	9185							0.09048627893048433
FIMMLILS	8	Unmodified	_FIMMLILS_					0	0	0		tr|A0A7D6W0S1|A0A7D6W0S1_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00970PE=4SV=1	tr|A0A7D6W0S1|A0A7D6W0S1_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00970PE=4SV=1	tr|A0A7D6W0S1|A0A7D6W0S1_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00970PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.2704772949219	2	484.271393	966.528232	-2.2164	-0.0010733	-2.2478	-0.0010885	-4.4642	-0.0021619	484.2702484438338	49.57	1.0893	46.429	45.99	47.079	-3.1416					65	20	5	0	0	0	0.72134	1	2818	2818		39.021	1.8624	1	907850			11159	35387	9176	9186	12036	12036					0.04362915961280578
FIMPDKCK	8	Oxidation (M)	_FIM(Oxidation (M))PDKCK_		FIM(1)PDKCK		FIM(82)PDKCK	0	0	1		ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	OvCa99_classI_Rep5	1	499.2489929199219	2	499.245906	996.477259	2.5854	0.0012908	3.676	0.0018352	6.2614	0.003126	499.2476519601827	107.71	1.5335	107.71	107.4	108.93	0					97	35	4	0	0	0	0.45246	1	12166	12166		82.305	10.927	1	12966000			11160	2042	9177	9187	12037	12037		73			-0.021120330835856294
FIMSVPILVL	10	Unmodified	_FIMSVPILVL_					0	0	0			REV__tr|A0A7D6ZV80|A0A7D6ZV80_9CLOTSulfatetransportsystempermeaseproteinCysTOS=ClostridiumintestinaleOX=36845GN=cysTPE=3SV=1	REV__tr|A0A7D6ZV80|A0A7D6ZV80_9CLOTSulfatetransportsystempermeaseproteinCysTOS=ClostridiumintestinaleOX=36845GN=cysTPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.2987060546875	2	566.345946	1130.67734	1.9885	0.0011262	-2.0304	-0.0011499	-0.041899	-2.3729E-05	566.345204335033	134.8	0.52628	134.8	134.74	135.27	0					20	11	3	0	0	0	0.026822	1	15713	15713		23.042	0	1	159940	+		11161	32243	9178	9188	12038	12038					0.1172276485567636
FINFCHLFL	9	Unmodified	_FINFCHLFL_					0	0	0		L1MC5_dup3481|chr4:19631159-19632103:+|1.0071503765471246|0.0011382453961836|9.79|425.0|63|2|anti-sense	L1MC5_dup3481|chr4:19631159-19632103:+|1.0071503765471246|0.0011382453961836|9.79|425.0|63|2|anti-sense	L1MC5_dup3481|chr4:19631159-19632103:+|1.0071503765471246|0.0011382453961836|9.79|425.0|63|2|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	577.300048828125	2	577.296788	1152.57902	0.67429	0.00038927	3.8264	0.002209	4.5007	0.0025983	577.2985886158132	153.8	3.8009	153.8	153.4	157.2	0					185	75	4	0	0	0	0.13154	1	18118	18118		88.643	20.158	1	5848200			11162	14606	9179	9189	12039	12039					0.0088358133048132
FINHHMNIQ	9	Unmodified	_FINHHMNIQ_					0	0	0		ENST00000488174.5_1_X:70779120-70779162:+|nuORF	ENST00000488174.5_1_X:70779120-70779162:+|nuORF	ENST00000488174.5_1_X:70779120-70779162:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	577.2803344726562	2	577.2822	1152.54985	1.6816	0.00097074	-1.8061	-0.0010426	-0.1245	-7.187E-05	577.2812120141159	137.76	1.1949	137.76	137.35	138.55	0					60	25	4	0	0	0	0.34496	1	16056	16056		57.811	1.3775	1	277050			11163	12662	9180	9190	12040	12040					-0.020325629657918398
FINIVVHSV	9	Unmodified	_FINIVVHSV_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;ENST00000587856.1_1_17:43311355-43318139:+|nuORF;ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1;nc|ENSG00000157827|Q96PY5|FMNL2;ENSG00000157827|ENST00000288670|FMNL2	nc|ENSG00000161791|Q8IVF7-2|FMNL3;nc|ENSG00000157827|Q96PY5|FMNL2	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.3111572265625	2	514.300384	1026.58622	-2.952	-0.0015182	1.3733	0.00070628	-1.5788	-0.00081196	514.3008668565112	104.12	0.38441	104.12	103.85	104.24	0					16	8	4	0	0	0	0.027441	1	11676	11676		58.782	37.08	1	293070			11164	6138;5913	9181	9191	12041	12041					0.07398637202550162
FINLCDALN	9	Unmodified	_FINLCDALN_					0	0	0		nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF	nc|ENSG00000138363|P31939-2|ATIC	nc|ENSG00000138363|P31939-2|ATIC	MULTI-MSMS	OvCa99_classI_Rep5	1	511.75146484375	2	511.75241	1021.49027	0.96374	0.0004932	-2.5593	-0.0013097	-1.5955	-0.00081651	511.7508956083582	153.8	0.87045	153.8	153.55	154.42	0					38	17	3	0	0	0	0.35444	1	18021	18021		56.721	4.4219	1	159350			11165	4678	9182	9192	12042	12042					-0.019618786998421456
FINMKSPMVRK	11	Unmodified	_FINMKSPMVRK_					0	0	0		nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8;ENSG00000153339|ENST00000283351|TRAPPC8	nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.91546630859375	3	450.917671	1349.73118	0.68899	0.00031068	-3.372	-0.0015205	-2.6831	-0.0012098	450.91602726356035	39.05	1.0424	36.123	35.849	36.891	-2.9264					50	20	4	0	0	0	0.68709	1	1571	1571		34.087	0.16487	1	189960			11166	5678	9183	9193	12043	12043					0.07030614015729952
FINNFGQIP	9	Unmodified	_FINNFGQIP_					0	0	0		WDFY3|p.Q3037Rfs*34|1|0.06|ENSG00000163625|chr4:84691725-84691725|T/-|frameshift_variant;WDFY3|p.S3365Qfs*9|1|0.07|ENSG00000163625|chr4:84678973-84678974|-/G|frameshift_variant;nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	WDFY3|p.Q3037Rfs*34|1|0.06|ENSG00000163625|chr4:84691725-84691725|T/-|frameshift_variant	WDFY3|p.Q3037Rfs*34|1|0.06|ENSG00000163625|chr4:84691725-84691725|T/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.3119506835938	2	525.274367	1048.53418	1.7834	0.00093679	-3.0778	-0.0016167	-1.2943	-0.00067989	525.7737903829985	76.699	0.52206	76.699	76.48	77.002	0					16	12	2	0	0	0	0.027462	1	7712	7712		38.806	0	1	204160			11167	36302	9184	9194	12044	12044					0.01185473788791569
FINPQLLSI	9	Unmodified	_FINPQLLSI_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000502426.5_1_17:48736553-48755440:+|nuORF;nc|ENSG00000108846|O15438-2|ABCC3;ABCC3|p.P450Rfs*37|1|0.21|ENSG00000108846|chr17:50665160-50665179|GTCCCTCTGTCCTGGCTGGA/-|frameshift_variant;nc|ENSG00000108846|O15438-5|ABCC3	ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-5|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MSMS	OvCa9_classI_Rep3	3	522.8072509765625	2	522.808042	1043.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.67	1	118.64	118.14	119.14	-1.0271								0	0	0	0.058381	1	9086	9086		76.774	15.802	1				11168	2682;14949	9185	9195	12045	12045					0.08147503999771288
FINSISSK	8	Unmodified	_FINSISSK_					0	0	0		tr|A0A553SG78|A0A553SG78_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_10345PE=3SV=1	tr|A0A553SG78|A0A553SG78_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_10345PE=3SV=1	tr|A0A553SG78|A0A553SG78_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_10345PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	448.2496337890625	2	448.247818	894.481082	0.97196	0.00043568	0.4361	0.00019548	1.4081	0.00063116	448.24784306694954	63.305	1.2357	63.305	63.058	64.294	0					59	30	3	0	0	0	0.68714	1	5684	5684		45.952	5.3793	1	2740200			11169	33126	9186	9196	12046	12046					0.02962096006149295
FIPLNFEATP	10	Unmodified	_FIPLNFEATP_					0	0	0		ENSG00000140598|ENST00000268206|EFL1;nc|ENSG00000140598|Q7Z2Z2-2|EFL1;ENST00000559429.1_1_15:82449944-82456284:-|nuORF	ENSG00000140598|ENST00000268206|EFL1	ENSG00000140598|ENST00000268206|EFL1	MULTI-MSMS	OvCa9_classI_Rep3	3	574.8012084960938	2	574.802957	1147.59136	-0.85924	-0.00049389	-2.888	-0.00166	-3.7472	-0.0021539	574.8012485504619	132.88	1.129	131.76	131.49	132.61	-1.1249					47	22	3	0	0	0	0.3094	1	10650	10650		79.713	7.8351	1	129910			11170	4864	9187	9197	12047	12047					0.02346896274525534
FIPQKTLLF	9	Unmodified	_FIPQKTLLF_					0	0	0		tr|A0A7D6VNF4|A0A7D6VNF4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17625PE=4SV=1	tr|A0A7D6VNF4|A0A7D6VNF4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17625PE=4SV=1	tr|A0A7D6VNF4|A0A7D6VNF4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17625PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8358764648438	2	553.83406	1105.65357	-6.2881	-0.0034826	-0.80638	-0.0004466	-7.0945	-0.0039292	553.8333711088012	162.92	1.2582	161.29	160.56	161.82	-1.6336					55	36	2	0	0	0	0.61365	1	16116	16116		30.318	0.47618	1	44362			11171	34700	9188	9198	12048	12048					0.10496667413508476
FIPQKTLLF	9	Unmodified	_FIPQKTLLF_					0	0	0		tr|A0A7D6VNF4|A0A7D6VNF4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17625PE=4SV=1	tr|A0A7D6VNF4|A0A7D6VNF4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17625PE=4SV=1	tr|A0A7D6VNF4|A0A7D6VNF4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17625PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	553.83406	1105.65357	-7.2503	-0.0040154	-0.013717	-7.5971E-06	-7.264	-0.004023	553.8338707404038	162.37	0.95435	161	160.6	161.55	-1.3692	-0.19657	0.0018612	NaN	30.318	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47003			11172	34700	9188	9198							0.10496667413508476
FIPSRPEEV	9	Unmodified	_FIPSRPEEV_					0	0	0		nc|ENSG00000204930|A6H8Z2-2|FAM221B;ENSG00000204930|ENST00000423537|FAM221B	nc|ENSG00000204930|A6H8Z2-2|FAM221B	nc|ENSG00000204930|A6H8Z2-2|FAM221B	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.8063354492188	2	537.284931	1072.55531	-1.1978	-0.00064357	-4.4586	-0.0023955	-5.6564	-0.0030391	537.2830501442588	69.555	1.3465	66.935	66.217	67.563	-2.6203					52	26	3	0	0	0	0.027232	1	5573	5573		56.721	0	1	71482			11173	9036	9189	9199	12049	12049					0.021934390976412033
FIPTDNSEIIS	11	Unmodified	_FIPTDNSEIIS_					0	0	0		nc|ENSG00000139793|Q5VZF2-3|MBNL2;PCCA-MBNL2|2|fusion;PCCA-MBNL2|4|fusion	nc|ENSG00000139793|Q5VZF2-3|MBNL2	nc|ENSG00000139793|Q5VZF2-3|MBNL2	MULTI-MSMS	OvCa9_classI_Rep4_	4	618.3156127929688	2	618.311343	1234.60813	0.3168	0.00019588	3.6251	0.0022415	3.9419	0.0024374	618.3135013937338	64.547	1.4051	61.062	60.822	62.227	-3.4854					76	28	4	0	0	0	0.16394	1	4613	4613		67.494	14.405	1	1008500			11174	15051	9190	9200	12050	12050					0.00021352369822125183
FIPTLDEY	8	Unmodified	_FIPTLDEY_					0	0	0			REV__tr|A0A553SFF1|A0A553SFF1_NIACIGluconokinaseOS=NialliacirculansOX=1397GN=gntKPE=3SV=1	REV__tr|A0A553SFF1|A0A553SFF1_NIACIGluconokinaseOS=NialliacirculansOX=1397GN=gntKPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	499.2494812011719	2	499.247483	996.480414	0.95387	0.00047622	1.9368	0.00096692	2.8906	0.0014431	499.24831202573387	155.81	2.9765	155.81	154.72	157.7	0					141	58	3	0	0	0	0.64377	1	18283	18283		54.765	7.9982	1	309150	+		11175	29571	9191	9201	12051	12051					-0.017967434335673715
FIPTTIRAI	9	Unmodified	_FIPTTIRAI_					0	0	0			REV__ENSG00000168772|ENST00000394767|CXXC4	REV__ENSG00000168772|ENST00000394767|CXXC4	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.7586669921875	2	516.316035	1030.61752	1.9159	0.00098921	-1.7289	-0.00089264	0.18703	9.6566E-05	516.314611125013	126.42	1.3584	125.35	124.97	126.33	-1.0715					45	25	3	0	0	0	0.027462	1	9967	9967		24.203	4.206	1	21347	+		11176	21401	9192	9202	12052	12052					0.10343210236646883
FIPVEDLNI	9	Unmodified	_FIPVEDLNI_					0	0	0		ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant;ENSG00000164199|ENST00000405460|ADGRV1;ENST00000509621.1_3_5:89989878-90055411:+|nuORF	ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.8143920898438	2	530.289682	1058.56481	0.1785	9.4656E-05	-4.4506	-0.0023601	-4.2721	-0.0022655	530.2870805633459	72.811	0.50194	72.811	72.533	73.035	0					21	12	2	0	0	0	0.027433	1	7087	7087		74.255	21.318	1	594540			11177	42	9193	9203	12053	12053					0.03787207383174973
FIQATLDKI	9	Unmodified	_FIQATLDKI_					0	0	0			REV__ENST00000510488.1_1_3:141190162-141190471:-|nuORF	REV__ENST00000510488.1_1_3:141190162-141190471:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	524.8056030273438	2	524.8055	1047.59645	-1.0909	-0.00057252	-1.8521	-0.00097202	-2.9431	-0.0015445	524.8041430606991	117.22	1.2891	117.09	116.96	118.25	-0.12869					58	25	3	0	0	0	0.2784	1	11257	11257		65.465	0	1	262990	+	+	11178	26942	9194	9204	12054	12054					0.07455200137110296
FIQEIEHAL	9	Unmodified	_FIQEIEHAL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	OvCa99_classI_Rep5	1	550.2937622070312	2	550.292756	1098.57096	1.8555	0.0010211	0.54919	0.00030221	2.4047	0.0013233	550.2927951716193	105.97	0.9254	105.97	105.75	106.67	0					38	20	2	0	0	0	0.033166	1	11918	11918		132.76	52.303	1	1318400			11179	4075	9195	9205	12055	12055					0.025617256147143053
FIQGDFSF	8	Unmodified	_FIQGDFSF_					0	0	0			REV__ENSG00000131015|ENST00000367351|ULBP2	REV__ENSG00000131015|ENST00000367351|ULBP2	MULTI-MSMS	OvCa99_classI_Rep5	1	480.7275390625	2	480.726718	959.438883	1.4531	0.00069855	1.0297	0.00049502	2.4829	0.0011936	480.72706439710527	90.827	1.2907	90.827	90.421	91.711	0					73	31	3	0	0	0	0.53252	1	9770	9770		74.255	15.473	1	1548600	+		11180	18989	9196	9206	12056	12056					-0.04245879402230912
FIQGQKPLF	9	Unmodified	_FIQGQKPLF_					0	0	0			REV__ENSG00000163637|ENST00000638394|PRICKLE2	REV__ENSG00000163637|ENST00000638394|PRICKLE2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.7926635742188	2	539.30821	1076.60187	-0.83432	-0.00044995	2.7106	0.0014618	1.8763	0.0010119	539.3095924018559	58.107	0.30372	54.762	54.495	54.799	-3.3449					10	5	3	0	0	0	0.027441	1	3794	3794		45.952	5.3793	1	130740	+		11181	20866	9197	9207	12057	12057					0.06662923719591163
FIQGYKFI	8	Unmodified	_FIQGYKFI_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5;DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.83343505859375	2	508.284203	1014.55385	-0.98685	-0.0005016	-0.66509	-0.00033806	-1.6519	-0.00083966	508.2845223599699	92.264	0.61063	89.721	89.262	89.873	-2.5425					16	11	2	0	0	0	0.028476	1	7989	7989		37.028	0	1	24664			11182	1103	9198	9208	12058	12058					0.04715849799561056
FIQGYKFI	8	Unmodified	_FIQGYKFI_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5;DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	508.284203	1014.55385	1.1213	0.00056996	-5.6416	-0.0028675	-4.5202	-0.0022976	508.7837949029553	90.922	0.78034	89.687	89.439	90.219	-1.2355	-0.0174	-0.0028654	NaN	42.474	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18928			11183	1103	9198	9208							0.04715849799561056
FIQHVFIQC	9	Unmodified	_FIQHVFIQC_					0	0	0		nc|ENSG00000135100|P20823-3|HNF1A	nc|ENSG00000135100|P20823-3|HNF1A	nc|ENSG00000135100|P20823-3|HNF1A	MULTI-SECPEP	OvCa9_classI_Rep2	2	566.8087158203125	2	567.791869	1133.56919	-1.3038	-0.00074028	-0.0027218	-1.5454E-06	-1.3065	-0.00074183	567.7915993987059	54.961	1.0469	52.147	51.872	52.918	-2.8139					24	20	2	0	0	0	0.027456	1	3793	3793		38.806	0	1	56531			11184	15030	9199	9209	12059	12059					0.007743933251049384
FIQKTKKL	8	Unmodified	_FIQKTKKL_					0	0	0		ENSA-SEC22B|3|fusion;ENSA-SEC22B|2|fusion;ENSG00000265808|ENST00000578049|SEC22B;ENSA-SEC22B|1|fusion;ENSA-SEC22B|4|fusion	ENSA-SEC22B|3|fusion	ENSA-SEC22B|3|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	503.3256530761719	2	503.326402	1004.63825	0.14036	7.0648E-05	-0.73987	-0.0003724	-0.59951	-0.00030175	503.32594865659956	112.82	1.9244	112.7	112.28	114.2	-0.12174					111	38	5	0	0	0	0.74229	1	10759	10759		30.504	0	1	946430			11185	798	9200	9210	12060	12060					0.13611800616320124
FIQMPRPTL	9	Unmodified	_FIQMPRPTL_					0	0	0		ENST00000507761.1_1_4:80148591-80148798:+|nuORF	ENST00000507761.1_1_4:80148591-80148798:+|nuORF	ENST00000507761.1_1_4:80148591-80148798:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	551.808349609375	2	551.807519	1101.60049	2.0539	0.0011334	2.7872	0.001538	4.841	0.0026713	551.8091639670778	95.182	0.66427	95.182	94.992	95.656	0					41	15	3	0	0	0	0.24951	1	10370	10370		68.787	2.3575	1	2279700			11186	12934	9201	9211	12061	12061					0.05374966359204336
FIQPYWIGDG	10	Unmodified	_FIQPYWIGDG_					0	0	0		LHFPL3|p.T133Pfs*11|1|0.08|ENSG00000187416|chr7:104329218-104329218|A/-|frameshift_variant;ENSG00000187416|ENST00000424859|LHFPL3	LHFPL3|p.T133Pfs*11|1|0.08|ENSG00000187416|chr7:104329218-104329218|A/-|frameshift_variant	LHFPL3|p.T133Pfs*11|1|0.08|ENSG00000187416|chr7:104329218-104329218|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	598.315185546875	2	598.292756	1194.57096	1.4056	0.00084095	0.70108	0.00041945	2.1067	0.0012604	598.2934180247836	108.59	0.86628	107.39	106.96	107.82	-1.1978					28	16	3	0	0	0	0.026752	1	7804	7804		44.117	12.587	1	252780			11187	8401	9202	9212	12062	12062					-0.018542743852776766
FIQTGADMW	9	Unmodified	_FIQTGADMW_					0	0	0			REV__nc|ENSG00000010379|Q9NSD5-2|SLC6A13	REV__nc|ENSG00000010379|Q9NSD5-2|SLC6A13	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.8001098632812	2	534.744585	1067.47462	-0.16554	-8.8522E-05	3.766	0.0020138	3.6005	0.0019253	535.2487806586571	61.074	0.34614	61.074	60.943	61.289	0					16	7	3	0	0	0	0.027462	1	5369	5369		29.15	13.508	1	292590	+		11188	16480	9203	9213	12063	12063					-0.056421652168864966
FIQYHNSAES	10	Unmodified	_FIQYHNSAES_					0	0	0		ENSG00000196284|ENST00000371459|SUPT3H;nc|ENSG00000196284|O75486-4|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	ENSG00000196284|ENST00000371459|SUPT3H	MULTI-SECPEP	OvCa9_classI_Rep4_	4	598.31689453125	2	598.272552	1194.53055	-0.46674	-0.00027924	1.0319	0.00061733	0.56512	0.00033809	598.7748805706099	109.06	0.5082	107.33	106.92	107.42	-1.7256					12	9	2	0	0	0	0.026734	1	10004	10004		39.253	8.7492	1	99279			11189	8585	9204	9214	12064	12064					-0.05893240775708364
FIRANKVVQ	9	Unmodified	_FIRANKVVQ_					0	0	0		tr|A0A553SI88|A0A553SI88_NIACIDUF1146domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14400PE=4SV=1	tr|A0A553SI88|A0A553SI88_NIACIDUF1146domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14400PE=4SV=1	tr|A0A553SI88|A0A553SI88_NIACIDUF1146domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14400PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.2922973632812	2	537.824558	1073.63456	2.0214	0.0010872	2.3286	0.0012524	4.35	0.0023395	537.8254352080336	79.761	1.3686	79.761	79.16	80.529	0					55	33	2	0	0	0	0.027462	1	8107	8107		40.573	0	1	1599700			11190	33355	9205	9215	12065	12065					0.10069130842452978
FIRDSPTIL	9	Unmodified	_FIRDSPTIL_					0	0	0		nc|ENSG00000116885|Q8WVF1-4|OSCP1;nc|ENSG00000116885|Q8WVF1-2|OSCP1;ENSG00000116885|ENST00000235532|OSCP1;nc|ENSG00000116885|Q8WVF1|OSCP1	nc|ENSG00000116885|Q8WVF1-4|OSCP1	nc|ENSG00000116885|Q8WVF1-4|OSCP1	MULTI-MSMS	OvCa99_classI_Rep5	1	531.3048095703125	2	531.303124	1060.5917	1.5202	0.00080766	1.1988	0.00063695	2.719	0.0014446	531.3035874248544	112.02	0.59891	112.02	111.88	112.48	0					20	12	2	0	0	0	0.13504	1	12756	12756		87.696	0	1	386580			11191	3217	9206	9216	12066	12066					0.06382315994369492
FIRERDRA	8	Unmodified	_FIRERDRA_					0	0	0		nc|ENSG00000101224|P30305-3|CDC25B;nc|ENSG00000101224|P30305-2|CDC25B;ENSG00000101224|ENST00000245960|CDC25B;nc|ENSG00000101224|P30305-4|CDC25B	nc|ENSG00000101224|P30305-3|CDC25B	nc|ENSG00000101224|P30305-3|CDC25B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.8063354492188	2	531.793789	1061.57303	1.5715	0.00083569	0.26297	0.00013985	1.8344	0.00097554	531.7937862643345	130.34	0.54471	128.86	128.66	129.21	-1.4779					16	10	2	0	0	0	0.028476	1	12494	12494		31.955	0	1	12139			11192	2156	9207	9217	12067	12067					0.04470199143179343
FIRFLKRTTT	10	Unmodified	_FIRFLKRTTT_					0	0	0			REV__AluY_dup98873|chr19:54106194-54106468:-|1.0550791275867215|0.0649823089056785|4.02|429.0|19|3|anti-sense	REV__AluY_dup98873|chr19:54106194-54106468:-|1.0550791275867215|0.0649823089056785|4.02|429.0|19|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8818359375	2	641.885147	1281.75574	-4.0037	-0.0025699	-0.45506	-0.00029209	-4.4587	-0.002862	642.3862707583961	149.94	3.9275	149.71	147.52	151.45	-0.22696					225	78	5	0	0	0	0.66721	2	15132	15132;15143		34.173	14.176	1	222110	+		11193	15624	9208	9218	12068;12069	12068					0.1261333348509197
FIRFLKRTTT	10	Unmodified	_FIRFLKRTTT_					0	0	0			REV__AluY_dup98873|chr19:54106194-54106468:-|1.0550791275867215|0.0649823089056785|4.02|429.0|19|3|anti-sense	REV__AluY_dup98873|chr19:54106194-54106468:-|1.0550791275867215|0.0649823089056785|4.02|429.0|19|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8823852539062	2	641.885147	1281.75574	-4.6434	-0.0029805	0.6524	0.00041876	-3.991	-0.0025618	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.67931	3	15666	15516;15666;15734		32.812	7.8809	1	543390	+		11194	15624	9208	9218	12070;12071;12072	12071					0.1261333348509197
FIRFLKRTTT	10	Unmodified	_FIRFLKRTTT_					0	0	0			REV__AluY_dup98873|chr19:54106194-54106468:-|1.0550791275867215|0.0649823089056785|4.02|429.0|19|3|anti-sense	REV__AluY_dup98873|chr19:54106194-54106468:-|1.0550791275867215|0.0649823089056785|4.02|429.0|19|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8829345703125	2	641.885147	1281.75574	-4.605	-0.0029559	0.1276	8.1903E-05	-4.4774	-0.002874	641.8852528126143	150.24	3.761	149.29	147.05	150.81	-0.95119					231	74	4	0	0	0	0.73378	1	12681	12681		26.693	0	1	246170	+		11195	15624	9208	9218	12073	12073					0.1261333348509197
FIRFLKRTTT	10	Unmodified	_FIRFLKRTTT_					0	0	0			REV__AluY_dup98873|chr19:54106194-54106468:-|1.0550791275867215|0.0649823089056785|4.02|429.0|19|3|anti-sense	REV__AluY_dup98873|chr19:54106194-54106468:-|1.0550791275867215|0.0649823089056785|4.02|429.0|19|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8827514648438	2	641.885147	1281.75574	-5.3554	-0.0034376	1.3541	0.00086916	-4.0013	-0.0025684	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.75313	2	13104	13104;13275		24.519	0.99649	1	804890	+		11196	15624	9208	9218	12074;12075	12074					0.1261333348509197
FIRFLKRTTT	10	Unmodified	_FIRFLKRTTT_					0	0	0			REV__AluY_dup98873|chr19:54106194-54106468:-|1.0550791275867215|0.0649823089056785|4.02|429.0|19|3|anti-sense	REV__AluY_dup98873|chr19:54106194-54106468:-|1.0550791275867215|0.0649823089056785|4.02|429.0|19|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8812866210938	2	641.885147	1281.75574	-2.5182	-0.0016164	-1.9587	-0.0012572	-4.4768	-0.0028736	641.8839546837315	150.47	2.9704	149.03	147.78	150.75	-1.4344					235	64	4	0	0	0	0.79917	1	14851	14851		19.104	0.84144	1	344900	+		11197	15624	9208	9218	12076	12076					0.1261333348509197
FIRFVIRFL	9	Unmodified	_FIRFVIRFL_					0	0	0			REV__ENSG00000066777|ENST00000262215|ARFGEF1;REV__ENSG00000124198|ENST00000371917|ARFGEF2	REV__ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.21942138671875	3	404.253488	1209.73863	3.5268	0.0014257	-2.7427	-0.0011087	0.78414	0.00031699	404.5869295956584	90.521	0.46846	90.521	90.269	90.738	0					16	11	2	0	0	0	0.027462	1	9743	9743		34.173	23.586	1	155480	+		11198	16823;18671	9209	9219	12077	12077					0.14215457670002252
FIRGAECTE	9	Unmodified	_FIRGAECTE_					0	0	0		ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.2721557617188	2	513.239667	1024.46478	1.2008	0.00061631	-3.7125	-0.0019054	-2.5117	-0.0012891	513.2377641003113	143.58	0.69357	143.58	143.37	144.06	0					17	13	2	0	0	0	0.027456	1	16791	16791		38.806	3.6054	1	51881			11199	9125	9210	9220	12078	12078					-0.04647353222264883
FIRGRFES	8	Unmodified	_FIRGRFES_					0	0	0			REV__ENST00000540418.5_1_12:68709960-68710011:-|nuORF	REV__ENST00000540418.5_1_12:68709960-68710011:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	506.2743835449219	2	506.272158	1010.52976	1.7132	0.00086734	1.5295	0.00077434	3.2427	0.0016417	506.2727467608177	54.771	2.6321	51.6	50.779	53.411	-3.1715					173	88	3	0	0	0	0.73626	1	1501	1501		33.516	0	1	154000	+		11200	27348	9211	9221	12079	12079					0.02492009365892045
FIRKFVFIAA	10	Unmodified	_FIRKFVFIAA_					0	0	0			REV__ENST00000582363.1_1_18:5241075-5241255:+|nuORF	REV__ENST00000582363.1_1_18:5241075-5241255:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.37060546875	2	606.368601	1210.72265	-0.26856	-0.00016285	2.0381	0.0012358	1.7695	0.001073	606.369699493104	145.24	3.8933	143.8	141.64	145.53	-1.4357					226	74	4	0	0	0	0.65434	1	14352	14352		35.618	14.671	1	336140	+		11201	27793	9212	9222	12080	12080					0.12571751433097234
FIRKYGKFC	9	Unmodified	_FIRKYGKFC_					0	0	0		PHKA1|p.R1066Ifs*45|1|0.07|ENSG00000067177|chrX:72593150-72593151|-/ATTCGACCCAGCAATCCCATTACTAGGTA|frameshift_variant	PHKA1|p.R1066Ifs*45|1|0.07|ENSG00000067177|chrX:72593150-72593151|-/ATTCGACCCAGCAATCCCATTACTAGGTA|frameshift_variant	PHKA1|p.R1066Ifs*45|1|0.07|ENSG00000067177|chrX:72593150-72593151|-/ATTCGACCCAGCAATCCCATTACTAGGTA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.2808227539062	2	581.315512	1160.61647	1.1993	0.00069718	0.70678	0.00041086	1.9061	0.001108	581.3155889593388	127.12	0.35686	127.12	126.96	127.32	0					13	7	2	0	0	0	0.027462	1	14698	14698		27.882	1.1893	1	261550			11202	15494	9213	9223	12081	12081					0.042586725960973126
FIRMLRMV	8	Unmodified	_FIRMLRMV_					0	0	0			REV__ENSG00000168263|ENST00000382082|KCNV2	REV__ENSG00000168263|ENST00000382082|KCNV2	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.7874755859375	2	533.306632	1064.59871	-0.047718	-2.5448E-05	-1.1095	-0.00059172	-1.1572	-0.00061717	533.3057330193607	71.061	0.62978	71.061	70.877	71.507	0					35	15	3	0	0	0	0.028476	1	6900	6900		33.516	0	1	1813600	+		11203	21357	9214	9224	12082	12082					0.06899634069577587
FIRMMRLVR	9	Unmodified	_FIRMMRLVR_					0	0	0			REV__nc|ENSG00000171126|Q8TAE7-2|KCNG3	REV__nc|ENSG00000171126|Q8TAE7-2|KCNG3	MULTI-MSMS	OvCa9_classI_Rep2	2	611.3545532226562	2	611.357188	1220.69982	-3.7398	-0.0022864	1.9635	0.0012004	-1.7763	-0.0010859	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.62352	1	15184	15184		29.15	7.1897	1	331570	+		11204	21595	9215	9225	12083	12083					0.09830085772273378
FIRNINPYGF	10	Unmodified	_FIRNINPYGF_					0	0	0		tr|A0A7D6VNJ5|A0A7D6VNJ5_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12840PE=4SV=1	tr|A0A7D6VNJ5|A0A7D6VNJ5_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12840PE=4SV=1	tr|A0A7D6VNJ5|A0A7D6VNJ5_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12840PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	413.2399597167969	3	414.220624	1239.64004	0.45989	0.0001905	-3.3883	-0.0014035	-2.9284	-0.001213	414.21917826244305	64.35	1.2086	61.625	61.128	62.336	-2.7245					38	22	2	0	0	0	0.027021	1	4903	4903		20.837	0	1	32418			11205	34709	9216	9226	12084	12084					0.029808096342321733
FIRQVQLR	8	Unmodified	_FIRQVQLR_					0	0	0			REV__NYNRIN|p.A1061Lfs*9|1|0.04|ENSG00000205978|chr14:24414928-24414929|-/TCTTACAAGAACATTTTCCACTTGGT|frameshift_variant	REV__NYNRIN|p.A1061Lfs*9|1|0.04|ENSG00000205978|chr14:24414928-24414929|-/TCTTACAAGAACATTTTCCACTTGGT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.85400390625	2	530.324725	1058.6349	1.2635	0.00067007	-2.9746	-0.0015775	-1.7111	-0.00090742	530.3234108006482	133	0.42595	133	132.7	133.13	0					13	8	2	0	0	0	0.028476	1	15426	15426		33.516	3.0119	1	61679	+		11206	29262	9217	9227	12085	12085					0.10792550562291581
FIRQVYVPR	9	Unmodified	_FIRQVYVPR_					0	0	0			REV__tr|A0A7D6ZVG7|A0A7D6ZVG7_9CLOTD-alanyl-D-alaninedipeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04170PE=3SV=1	REV__tr|A0A7D6ZVG7|A0A7D6ZVG7_9CLOTD-alanyl-D-alaninedipeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04170PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3436279296875	2	589.345658	1176.67676	-3.0463	-0.0017953	-1.5159	-0.00089337	-4.5622	-0.0026887	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.7044	1	15101	15101		16.473	4.9621	1	272220	+		11207	32251	9218	9228	12086	12086					0.09549106250847217
FIRSEIIVVG	10	Unmodified	_FIRSEIIVVG_					0	0	0			REV__ENST00000463018.5_1_1:65713958-65811352:+|nuORF	REV__ENST00000463018.5_1_1:65713958-65811352:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	566.8385620117188	2	566.839874	1131.66519	-0.53899	-0.00030552	-2.735	-0.0015503	-3.274	-0.0018558	566.8382497478128	37.508	0.73766	37.508	37.114	37.851	0					36	15	4	0	0	0	0.69073	1	2066	2066		31.53	3.6476	1	523670	+		11208	24002	9219	9229	12087	12087					0.10462864436840391
FIRSEIIVVG	10	Unmodified	_FIRSEIIVVG_					0	0	0			REV__ENST00000463018.5_1_1:65713958-65811352:+|nuORF	REV__ENST00000463018.5_1_1:65713958-65811352:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	566.839874	1131.66519	-0.53899	-0.00030552	-2.735	-0.0015503	-3.274	-0.0018558	566.8382497478128	37.508	0.73766	37.508	37.114	37.851	0	0	0	NaN	31.53	36	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	523670	+		11209	24002	9219	9229							0.10462864436840391
FIRVIAHWPG	10	Unmodified	_FIRVIAHWPG_					0	0	0			REV__ENSG00000186529|ENST00000221307|CYP4F3	REV__ENSG00000186529|ENST00000221307|CYP4F3	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.3176879882812	2	598.340375	1194.6662	2.8491	0.0017047	3.1658	0.0018942	6.0149	0.0035989	598.3425492047719	107.9	0.1696	107.9	107.82	107.99	0					7	3	3	0	0	0	0.027204	1	12184	12184		24.203	3.3656	1	825520	+		11210	22598	9220	9230	12088	12088					0.07665123596370904
FIRVIAHWPG	10	Unmodified	_FIRVIAHWPG_					0	0	0			REV__ENSG00000186529|ENST00000221307|CYP4F3	REV__ENSG00000186529|ENST00000221307|CYP4F3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	598.3180541992188	2	598.340375	1194.6662	0.35251	0.00021092	3.6942	0.0022104	4.0467	0.0024213	598.3440049049636	109.31	0.68059	107.58	107.47	108.15	-1.7256					18	12	2	0	0	0	0.026822	1	10028	10028		38.806	9.6361	1	43975	+		11211	22598	9220	9230	12089	12089					0.07665123596370904
FISACKRQKVL	11	Carbamidomethyl (C)	_FISAC(Carbamidomethyl (C))KRQKVL_	FISAC(1)KRQKVL		FISAC(48)KRQKVL		0	1	0			REV__ENST00000366959.4_1_1:213447250-213447538:+|nuORF	REV__ENST00000366959.4_1_1:213447250-213447538:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.59869384765625	3	450.595585	1348.76493	0.7379	0.00033249	4.195	0.0018902	4.9329	0.0022227	450.5974910542259	75.612	2.2066	72.673	72.255	74.462	-2.9389					135	45	5	0	0	0	0.56391	1	5978	5978		47.96	6.5329	1	959650	+		11212	24887	9221	9231	12090	12090	298				0.1044935877912394
FISAFISLF	9	Unmodified	_FISAFISLF_					0	0	0		L1PA7_dup9238|chr10:48372221-48377370:+|1.4943041569802586|0.2795461482764699|2.42|429.0|238|2|anti-sense	L1PA7_dup9238|chr10:48372221-48377370:+|1.4943041569802586|0.2795461482764699|2.42|429.0|238|2|anti-sense	L1PA7_dup9238|chr10:48372221-48377370:+|1.4943041569802586|0.2795461482764699|2.42|429.0|238|2|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	522.7913818359375	2	522.791861	1043.56917	1.1735	0.00061348	-2.4933	-0.0013035	-1.3198	-0.00068998	522.7904069029332	138.24	1.0569	138.24	137.97	139.03	0					49	21	4	0	0	0	0.44294	1	16151	16151		47.916	1.9636	1	573490			11213	14765	9222	9232	12091	12091					0.04912716596732025
FISHYTLLF	9	Unmodified	_FISHYTLLF_					0	0	0		nc|ENSG00000214694|A8MVX0|ARHGEF33;ENSG00000214694|ENST00000409978|ARHGEF33	nc|ENSG00000214694|A8MVX0|ARHGEF33	nc|ENSG00000214694|A8MVX0|ARHGEF33	MULTI-MSMS	OvCa99_classI_Rep5	1	570.806640625	2	570.808042	1139.60153	1.6522	0.00094307	-4.4429	-0.002536	-2.7907	-0.001593	570.8056676822716	117.02	0.68889	117.02	116.77	117.46	0					36	14	3	0	0	0	0.34496	1	13396	13396		57.811	6.4758	1	574000			11214	9178	9223	9233	12092	12092					0.03731503999733832
FISTREKKS	9	Unmodified	_FISTREKKS_					0	0	0			REV__nc|ENSG00000147316|Q8NEM0-3|MCPH1	REV__nc|ENSG00000147316|Q8NEM0-3|MCPH1	MULTI-SECPEP	OvCa9_classI_Rep2	2	547.3267822265625	2	548.31148	1094.60841	0.18025	9.8836E-05	-0.43905	-0.00024074	-0.2588	-0.0001419	548.3112267860604	93.395	1.0923	92.227	91.953	93.046	-1.168					51	20	4	0	0	0	0.02741	1	8395	8395		71.296	19.96	1	199970	+		11215	20057	9224	9234	12093	12093					0.06488816880323611
FISVAVLTN	9	Unmodified	_FISVAVLTN_					0	0	0			REV__nc|ENSG00000292373|Q01113-3|IL9R	REV__nc|ENSG00000292373|Q01113-3|IL9R	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.27978515625	2	482.279118	962.543683	-0.49139	-0.00023699	0.35094	0.00016925	-0.14045	-6.7738E-05	482.2791647442718	94.158	1.1144	91.69	91.296	92.41	-2.4685					38	22	2	0	0	0	0.3076	2	8254	8244;8254		62.107	5.2794	1	161110	+		11216	29220	9225	9235	12094;12095	12095					0.06091242074319325
FISVCNNDT	9	Unmodified	_FISVCNNDT_					0	0	0		ENST00000426249.1_1_17:18365525-18365891:+|nuORF;ENST00000436471.2_1_17:20385129-20386047:-|nuORF	ENST00000426249.1_1_17:18365525-18365891:+|nuORF	ENST00000426249.1_1_17:18365525-18365891:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.7808837890625	2	506.723849	1011.43315	-0.78628	-0.00039842	1.615	0.00081837	0.82874	0.00041994	506.7243663452933	102.89	0.83615	101.37	101	101.83	-1.5211					21	15	2	0	0	0	0.027462	1	7056	7056		23.042	0	1	32803			11217	11732	9226	9236	12096	12096					-0.07211345976213579
FITFDGDRY	9	Unmodified	_FITFDGDRY_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B;ENST00000525715.5_1_11:1244314-1260349:+|nuORF	ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	MULTI-SECPEP	OvCa9_classI_Rep2	2	567.7935791015625	2	567.266739	1132.51892	1.531	0.0008685	1.8816	0.0010674	3.4126	0.0019359	567.2677021469569	89.045	1.5783	87.677	87.037	88.615	-1.3676					43	31	3	0	0	0	0.027462	1	7885	7885		20.947	0	1	28553			11218	3283	9227	9237	12097	12097					-0.042034377990376015
FITHLRYFA	9	Unmodified	_FITHLRYFA_					0	0	0		tr|A0A553SJA1|A0A553SJA1_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16310PE=4SV=1	tr|A0A553SJA1|A0A553SJA1_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16310PE=4SV=1	tr|A0A553SJA1|A0A553SJA1_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16310PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.3297729492188	2	584.319109	1166.62366	2.2702	0.0013265	0.025279	1.4771E-05	2.2955	0.0013413	584.3194269858064	113.44	0.20852	113.44	113.29	113.5	0					8	5	2	0	0	0	0.027462	1	12922	12922		40.573	10.069	1	154040			11219	33480	9228	9238	12098	12098					0.047017284681714955
FITHPISLL	9	Unmodified	_FITHPISLL_					0	0	0			REV__ENST00000491720.5_1_2:182780297-182780357:+|nuORF	REV__ENST00000491720.5_1_2:182780297-182780357:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	521.3125	2	520.810585	1039.60662	0.37393	0.00019475	2.1953	0.0011433	2.5693	0.0013381	520.8116311629591	153.38	1.4209	153.38	152.75	154.17	0					47	28	3	0	0	0	0.6653	1	17950	17950		24.203	1.1603	1	377760	+		11220	26680	9229	9239	12099	12099					0.08839807862386806
FITICGIAMVA	11	Carbamidomethyl (C)	_FITIC(Carbamidomethyl (C))GIAMVA_	FITIC(1)GIAMVA		FITIC(44)GIAMVA		0	1	0			REV__tr|A0A553SFE6|A0A553SFE6_NIACIDUF624domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_08780PE=4SV=1	REV__tr|A0A553SFE6|A0A553SFE6_NIACIDUF624domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_08780PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	597.809814453125	2	598.31432	1194.61409	2.1957	0.0013137	2.6254	0.0015708	4.8211	0.0028846	598.818643031254	116.52	1.6515	116.52	115.3	116.95	0					46	35	2	0	0	0	0.60609	1	13324	13324		44.117	8.4985	1	372960	+		11221	29569	9230	9240	12100	12100	363				0.024564560761291432
FITIMDPEP	9	Unmodified	_FITIMDPEP_					0	0	0			REV__nc|ENSG00000168918|Q92835-3|INPP5D	REV__nc|ENSG00000168918|Q92835-3|INPP5D	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.2764892578125	2	531.762443	1061.51033	1.9494	0.0010366	-4.1533	-0.0022086	-2.2038	-0.0011719	531.7600665765722	78.072	0.5724	78.072	77.884	78.457	0					20	13	3	0	0	0	0.027462	1	7902	7902		37.159	0	1	576410	+		11222	21418	9231	9241	12101	12101					-0.017961277598715242
FITIPLMAL	9	Unmodified	_FITIPLMAL_					0	0	0		tr|A0A553SLN8|A0A553SLN8_NIACIProbabledisulfideformationproteinOS=NialliacirculansOX=1397GN=bdbCPE=3SV=1	tr|A0A553SLN8|A0A553SLN8_NIACIProbabledisulfideformationproteinOS=NialliacirculansOX=1397GN=bdbCPE=3SV=1	tr|A0A553SLN8|A0A553SLN8_NIACIProbabledisulfideformationproteinOS=NialliacirculansOX=1397GN=bdbCPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.7872009277344	2	509.803914	1017.59328	-1.1928	-0.00060808	3.3675	0.0017168	2.1747	0.0011087	509.8039847787058	100.02	0.29852	97.691	97.468	97.766	-2.3253					6	5	2	0	0	0	0.027462	1	8927	8927		25.45	1.2474	1	9319.1			11223	33746	9232	9242	12102	12102					0.08518233758786664
FITITLMKI	9	Unmodified	_FITITLMKI_					0	0	0		ENST00000520481.1_1_8:28304597-28321161:-|nuORF	ENST00000520481.1_1_8:28304597-28321161:-|nuORF	ENST00000520481.1_1_8:28304597-28321161:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	540.330078125	2	540.330296	1078.64604	-1.5762	-0.00085169	1.2934	0.00069888	-0.28281	-0.00015281	540.3309156564876	138.68	4.2384	138.45	137.13	141.37	-0.22697					227	86	3	0	0	0	0.58665	1	13883	13883		33.516	4.3455	1	66382			11224	13107	9233	9243	12103	12103					0.10986191821598368
FITITLMKI	9	Unmodified	_FITITLMKI_					0	0	0		ENST00000520481.1_1_8:28304597-28321161:-|nuORF	ENST00000520481.1_1_8:28304597-28321161:-|nuORF	ENST00000520481.1_1_8:28304597-28321161:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3316650390625	2	540.330296	1078.64604	0.34656	0.00018726	-0.55993	-0.00030255	-0.21337	-0.00011529	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.63422	1	13856	13856		27.882	1.0861	1	342200			11225	13107	9233	9243	12104	12104					0.10986191821598368
FITPKLKVHN	10	Unmodified	_FITPKLKVHN_					0	0	0			REV__ENSG00000175097|ENST00000311485|RAG2	REV__ENSG00000175097|ENST00000311485|RAG2	MULTI-SECPEP	OvCa9_classI_Rep3	3	598.315185546875	2	598.861141	1195.70773	1.4571	0.00087261	-3.8253	-0.0022908	-2.3681	-0.0014182	598.8583501753227	108.92	0.25923	107.72	107.56	107.82	-1.1978					6	4	2	0	0	0	0.026956	1	7804	7804		42.396	21.449	1	6202.1	+		11226	21869	9234	9244	12105	12105					0.11770259565082597
FITQHPWASL	10	Unmodified	_FITQHPWASL_					0	0	0		ENSG00000099219|ENST00000339450|ERMP1;nc|ENSG00000099219|Q7Z2K6-2|ERMP1;ENST00000475005.1_1_9:5812814-5833063:-|nuORF	ENSG00000099219|ENST00000339450|ERMP1	ENSG00000099219|ENST00000339450|ERMP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	600.3153686523438	2	600.314023	1198.61349	0.10657	6.3974E-05	-1.2888	-0.00077371	-1.1823	-0.00070973	600.3133222024811	101.55	3.5557	99.284	98.883	102.44	-2.2665					163	68	6	0	0	0	0.6104	1	9118	9118		40.778	0	1	611890			11227	1961	9235	9245	12106	12106					0.022131207429310962
FITSSMLNSR	10	Unmodified	_FITSSMLNSR_					0	0	0		UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.Q2012Sfs*13|1|0.03|ENSG00000127481|chr1:19156309-19156310|-/A|frameshift_variant;UBR4|p.M2075Wfs*25|1|0.07|ENSG00000127481|chr1:19155519-19155519|A/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-5|UBR4	UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2896728515625	2	578.294973	1154.57539	-7.6021	-0.0043963	-1.6299	-0.00094256	-9.232	-0.0053388	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.41408	2	14165	14154;14165		66.429	3.123	1	1429200			11228	3833	9236	9246	12107;12108	12108					0.004288667659693601
FITSYYSFK	9	Unmodified	_FITSYYSFK_					0	0	0		tr|A0A7D6VSN9|A0A7D6VSN9_9CLOTTransportpermeaseproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07640PE=3SV=1	tr|A0A7D6VSN9|A0A7D6VSN9_9CLOTTransportpermeaseproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07640PE=3SV=1	tr|A0A7D6VSN9|A0A7D6VSN9_9CLOTTransportpermeaseproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07640PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.289794921875	2	578.289682	1154.56481	2.6604	0.0015385	-3.3097	-0.001914	-0.64925	-0.00037546	578.2875433162809	133.74	3.4984	132.22	131.46	134.96	-1.5257					171	70	3	0	0	0	0.27546	1	12920	12920		65.803	0.33779	1	165290			11229	35043	9237	9247	12109	12109					-0.006287926168397462
FIVAGIWFQIR	11	Unmodified	_FIVAGIWFQIR_					0	0	0			REV__ENST00000569075.5_1_15:42525398-42565582:-|nuORF	REV__ENST00000569075.5_1_15:42525398-42565582:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.59918212890625	3	450.595802	1348.76558	0.7379	0.00033249	3.7127	0.0016729	4.4506	0.0020054	450.5974910542259	75.612	2.2066	72.673	72.255	74.462	-2.9389					135	45	5	0	0	0	0.65063	1	5990	5990		40.058	1.3046	1	959650	+		11230	17637	9238	9248	12110	12110					0.10514521490495099
FIVEETLPL	9	Unmodified	_FIVEETLPL_					0	0	0		nc|ENSG00000197714|Q14592-2|ZNF460;ENSG00000197714|ENST00000360338|ZNF460	nc|ENSG00000197714|Q14592-2|ZNF460	nc|ENSG00000197714|Q14592-2|ZNF460	MULTI-MSMS	OvCa99_classI_Rep5	1	530.8006591796875	2	530.799883	1059.58521	1.2176	0.00064629	0.38092	0.00020219	1.5985	0.00084848	530.8000080739153	145.27	2.0248	145.27	144.99	147.01	0					112	41	4	0	0	0	0.12365	2	16993	16970;16993		90.777	0.1758	1	1202100			11231	8739	9239	9249	12111;12112	12112					0.0578037804300493
FIVFIIFIRN	10	Unmodified	_FIVFIIFIRN_					0	0	0			REV__tr|A0A7D6ZXJ8|A0A7D6ZXJ8_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_23240PE=3SV=1	REV__tr|A0A7D6ZXJ8|A0A7D6ZXJ8_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_23240PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	427.9300842285156	3	427.928781	1280.76451	1.7119	0.00073257	0.70193	0.00030037	2.4138	0.0010329	427.9290217090034	65.493	1.4717	62.547	62.198	63.67	-2.9459					92	28	4	0	0	0	0.7759	1	2678	2678		15.333	0	1	349590	+		11232	32335	9240	9250	12113	12113					0.13536307121603386
FIVHDLLTIQ	10	Unmodified	_FIVHDLLTIQ_					0	0	0			REV__ENSG00000113319|ENST00000265080|RASGRF2	REV__ENSG00000113319|ENST00000265080|RASGRF2	MULTI-SECPEP	OvCa9_classI_Rep3	3	600.3154907226562	2	599.845156	1197.67576	0.7637	0.0004581	-3.8343	-0.0023	-3.0706	-0.0018419	599.8426631017676	101.3	0.84116	99.699	99.446	100.29	-1.6053					25	15	2	0	0	0	0.027056	1	6888	6888		27.882	10.414	1	87221	+		11233	18145	9241	9251	12114	12114					0.0848284709127256
FIVIIYNDL	9	Unmodified	_FIVIIYNDL_					0	0	0			REV__tr|A0A7D6VQK5|A0A7D6VQK5_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15350PE=4SV=1	REV__tr|A0A7D6VQK5|A0A7D6VQK5_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15350PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.7810668945312	2	555.3157	1108.61685	2.0247	0.0011243	-2.0777	-0.0011538	-0.052991	-2.9427E-05	555.3141436822455	77.7	0.38304	77.7	77.501	77.884	0					18	8	3	0	0	0	0.027462	1	7852	7852		27.882	7.4004	1	480440	+		11234	31333	9242	9252	12115	12115					0.06688370796928211
FIVLATFLLSL	11	Unmodified	_FIVLATFLLSL_					0	0	0		ENSG00000142319|ENST00000270349|SLC6A3	ENSG00000142319|ENST00000270349|SLC6A3	ENSG00000142319|ENST00000270349|SLC6A3	MULTI-MSMS	OvCa9_classI_Rep4_	4	412.92742919921875	3	412.924925	1235.75295	-0.45561	-0.00018813	3.6901	0.0015237	3.2345	0.0013356	412.926517070453	55.311	2.1325	52.016	51.648	53.781	-3.2944					136	41	5	0	0	0	0.60035	1	3481	3481		44.639	2.3014	1	2139000			11235	4966	9243	9253	12116	12116					0.14450065307619298
FIVLLAGF	8	Unmodified	_FIVLLAGF_					0	0	0			REV__tr|A0A7D6VNP4|A0A7D6VNP4_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16150PE=3SV=1	REV__tr|A0A7D6VNP4|A0A7D6VNP4_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16150PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	440.26910400390625	2	440.270564	878.526576	-2.654	-0.0011685	-2.194	-0.00096596	-4.848	-0.0021344	440.26950058570867	153.36	0.68338	153.13	152.88	153.56	-0.22696					26	17	2	0	0	0	0.7543	1	15620	15620		24.504	4.0222	1	20899	+		11236	31198	9244	9254	12117	12117					0.08245366259177445
FIVRYGYIY	9	Unmodified	_FIVRYGYIY_					0	0	0		nc|ENSG00000108370|O75916-2|RGS9;nc|ENSG00000108370|O75916-3|RGS9;ENST00000581175.5_1_17:63133658-63206777:+|nuORF;nc|ENSG00000108370|O75916-5|RGS9;ENSG00000108370|ENST00000262406|RGS9	nc|ENSG00000108370|O75916-2|RGS9	nc|ENSG00000108370|O75916-2|RGS9	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.31884765625	2	597.321317	1192.62808	2.1726	0.0012977	-0.93133	-0.0005563	1.2413	0.00074144	597.3207161826147	107.32	0.58559	107.32	107.02	107.6	0					23	13	2	0	0	0	0.027462	1	12127	12127		33.516	1.5607	1	1381600			11237	2649	9245	9255	12118	12118					0.0394719289108707
FIVSSVLLVF	10	Unmodified	_FIVSSVLLVF_					0	0	0		tr|A0A7D6ZN53|A0A7D6ZN53_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14730PE=4SV=1	tr|A0A7D6ZN53|A0A7D6ZN53_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14730PE=4SV=1	tr|A0A7D6ZN53|A0A7D6ZN53_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14730PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3428344726562	2	562.341718	1122.66888	1.2434	0.00069921	1.8105	0.0010181	3.0539	0.0017173	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.79715	1	14202	14202		19.36	1.995	1	683710			11238	35673	9246	9256	12119	12119					0.11245534210706865
FIVVCQLQS	9	Carbamidomethyl (C)	_FIVVC(Carbamidomethyl (C))QLQS_	FIVVC(1)QLQS		FIVVC(120)QLQS		0	1	0			REV__ENSG00000023839|ENST00000647814|ABCC2	REV__ENSG00000023839|ENST00000647814|ABCC2	MULTI-SECPEP	OvCa9_classI_Rep3	3	547.3278198242188	2	547.289159	1092.56377	-1.4013	-0.00076694	-4.3635	-0.0023881	-5.7648	-0.003155	547.2861709434312	93.926	1.3693	91.964	91.627	92.997	-1.9617					78	26	5	0	0	0	0.027265	1	6131	6131		115.46	22.264	1	197700	+		11239	16561	9247	9257	12120	12120	188				0.021186697426401224
FIVVFILLL	9	Unmodified	_FIVVFILLL_					0	0	0			REV__ENST00000605788.5_1_10:103922221-103922419:+|nuORF	REV__ENST00000605788.5_1_10:103922221-103922419:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.8631591796875	2	538.859547	1075.70454	2.6704	0.0014389	2.5078	0.0013513	5.1781	0.0027903	538.8612720845362	133.45	7.6689	131.93	131.41	139.08	-1.5257					434	157	6	0	0	0	0.32242	2	13098	13098;13221		60.404	4.8994	1	17348000	+		11240	28068	9248	9258	12121;12122	12121					0.16971616458386052
FIVVRNALL	9	Unmodified	_FIVVRNALL_					0	0	0		ENSG00000180934|ENST00000641900|OR56A1;nc|ENSG00000180934|Q8NGH5|OR56A1	ENSG00000180934|ENST00000641900|OR56A1	ENSG00000180934|ENST00000641900|OR56A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.8312377929688	2	522.831852	1043.64915	0.10892	5.6946E-05	-0.76681	-0.00040091	-0.6579	-0.00034397	522.8313885960896	97.76	1.4698	95.381	95.065	96.534	-2.3786					57	28	3	0	0	0	0.25214	1	8669	8669		68.485	2.6815	1	189290			11241	7902	9249	9259	12123	12123					0.12907202990618316
FIVVRNALL	9	Unmodified	_FIVVRNALL_					0	0	0		ENSG00000180934|ENST00000641900|OR56A1;nc|ENSG00000180934|Q8NGH5|OR56A1	ENSG00000180934|ENST00000641900|OR56A1	ENSG00000180934|ENST00000641900|OR56A1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	522.831852	1043.64915	-0.78485	-0.00041035	0.49756	0.00026014	-0.28729	-0.0001502	522.8320141167563	97.182	1.4156	95.423	95.053	96.469	-1.7595	0.020593	0.00065851	NaN	68.485	60	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223370			11242	7902	9249	9259							0.12907202990618316
FIVYVEDQ	8	Unmodified	_FIVYVEDQ_					0	0	0		ENST00000521434.5_1_8:80831342-80915282:-|nuORF	ENST00000521434.5_1_8:80831342-80915282:-|nuORF	ENST00000521434.5_1_8:80831342-80915282:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.329345703125	2	506.752933	1011.49131	1.9576	0.00099201	2.9161	0.0014777	4.8736	0.0024697	506.7544368293909	136.7	0.77441	135.16	134.89	135.67	-1.5437					19	15	2	0	0	0	0.028476	1	13330	13330		60.294	2.4827	1	18253			11243	13124	9250	9260	12124	12124					-0.013973410592939217
FIVYVEDQ	8	Unmodified	_FIVYVEDQ_					0	0	0		ENST00000521434.5_1_8:80831342-80915282:-|nuORF	ENST00000521434.5_1_8:80831342-80915282:-|nuORF	ENST00000521434.5_1_8:80831342-80915282:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	506.752933	1011.49131	-1.586	-0.0008037	6.586	0.0033375	5	0.0025338	506.755843109035	136.38	0.24677	135.27	135.1	135.34	-1.1076	0.057173	0.0020639	NaN	60.294	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6441.2			11244	13124	9250	9260							-0.013973410592939217
FIVYVSIGIL	10	Unmodified	_FIVYVSIGIL_					0	0	0			REV__nc|ENSG00000140798|Q96J65|ABCC12	REV__nc|ENSG00000140798|Q96J65|ABCC12	MULTI-MSMS	OvCa9_classI_Rep2	2	562.3428955078125	2	562.341718	1122.66888	-1.142	-0.00064221	3.7902	0.0021314	2.6482	0.0014892	562.3438081477608	141.84	4.7959	141.62	140.24	145.03	-0.22697					133	96	2	0	0	0	0.74484	1	14194	14194		25.45	2.4077	1	113870	+		11245	19701	9251	9261	12125	12125					0.11245534210706865
FIWENIHTL	9	Unmodified	_FIWENIHTL_					0	0	0		nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST	nc|ENSG00000151914|Q03001|DST	nc|ENSG00000151914|Q03001|DST	MULTI-MSMS	OvCa99_classI_Rep5	1	586.8101806640625	2	586.808574	1171.60259	1.0194	0.00059817	0.65748	0.00038582	1.6769	0.00098399	586.8089279629427	123.52	1.9344	123.52	123.04	124.98	0					93	41	3	0	0	0	0.03923	3	14227	14227;14251;14276		127.46	50.144	1	4350000			11246	5594	9252	9262	12126;12127;12128	12126					0.023657183686509597
FIWHARRA	8	Unmodified	_FIWHARRA_					0	0	0			REV__nc|ENSG00000160505|Q96MN2-2|NLRP4	REV__nc|ENSG00000160505|Q96MN2-2|NLRP4	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.810791015625	2	528.796135	1055.57772	1.6215	0.00085746	-0.51201	-0.00027075	1.1095	0.00058671	528.7958349004178	127.86	0.55482	127.86	127.58	128.14	0					17	11	2	0	0	0	0.028476	1	14788	14788		26.796	0	1	63906	+		11247	20663	9253	9263	12129	12129					0.052151280766111086
FIWKEMGLG	9	Unmodified	_FIWKEMGLG_					0	0	0			REV__LMLN|p.F649Lfs*18|1|0.09|ENSG00000185621|chr3:198038643-198038662|ATTTCTTCTGTGTATATGGC/-|frameshift_variant	REV__LMLN|p.F649Lfs*18|1|0.09|ENSG00000185621|chr3:198038643-198038662|ATTTCTTCTGTGTATATGGC/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.3467407226562	2	540.78097	1079.54739	-1.1595	-0.00062703	2.1906	0.0011846	1.0311	0.0005576	540.7820597176145	82.665	0.87897	79.982	79.587	80.466	-2.6829					32	17	2	0	0	0	0.027426	1	6902	6902		66.429	0	1	182230	+		11248	28624	9254	9264	12130	12130					0.010795885765219282
FIWKKEKD	8	Unmodified	_FIWKKEKD_					0	0	0			REV__ENSG00000154175|ENST00000471714|ABI3BP	REV__ENSG00000154175|ENST00000471714|ABI3BP	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.3330078125	2	547.305667	1092.59678	2.3098	0.0012642	-1.4759	-0.00080778	0.83387	0.00045638	547.3044947957144	121.09	0.92046	121.09	120.74	121.66	0					35	20	2	0	0	0	0.028476	1	13943	13943		45.952	5.3793	1	257400	+		11249	20365	9255	9265	12131	12131					0.05418619857005069
FIWKNTYIVL	10	Unmodified	_FIWKNTYIVL_					0	0	0		tr|A0A553SFK3|A0A553SFK3_NIACICompetenceproteinCoiAOS=NialliacirculansOX=1397GN=CEQ21_09025PE=4SV=1	tr|A0A553SFK3|A0A553SFK3_NIACICompetenceproteinCoiAOS=NialliacirculansOX=1397GN=CEQ21_09025PE=4SV=1	tr|A0A553SFK3|A0A553SFK3_NIACICompetenceproteinCoiAOS=NialliacirculansOX=1397GN=CEQ21_09025PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	432.9152526855469	3	432.916541	1295.72779	-1.1041	-0.00047799	-2.0409	-0.00088354	-3.145	-0.0013615	432.9158567399814	54.785	2.7829	51.971	51.473	54.256	-2.8139					169	55	5	0	0	0	0.73938	1	3759	3759		26.063	2.6855	1	2816800			11250	33044	9256	9266	12132	12132					0.09176010505029808
FIWQKGLI	8	Unmodified	_FIWQKGLI_					0	0	0		tr|A0A7D6VNP2|A0A7D6VNP2_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_13730PE=3SV=1	tr|A0A7D6VNP2|A0A7D6VNP2_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_13730PE=3SV=1	tr|A0A7D6VNP2|A0A7D6VNP2_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_13730PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	502.30010986328125	2	502.80002	1003.58549	-0.49044	-0.00024659	4.418	0.0022214	3.9275	0.0019748	502.8022148138129	114.29	0.4929	114.17	113.86	114.35	-0.11777					23	9	3	0	0	0	0.028476	1	10869	10869		35.201	10.998	1	354020			11251	34720	9257	9267	12133	12133					0.08383842553507748
FIWYRRYMRDR	11	Unmodified	_FIWYRRYMRDR_					0	0	0			REV__nc|ENSG00000198604|Q9NRL2-2|BAZ1A	REV__nc|ENSG00000198604|Q9NRL2-2|BAZ1A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.9781494140625	3	554.620905	1660.84088	-0.20879	-0.0001158	0.20788	0.0001153	-0.0009062	-5.026E-07	555.2898915671258	87.251	0.9517	84.624	84.103	85.055	-2.6269					35	18	3	0	0	0	0.026551	1	7449	7449		1.4188	1.0473	1	72638	+		11252	23034	9258	9268	12134	12134					0.036897556792609976
FIWYRRYMRDR	11	Unmodified	_FIWYRRYMRDR_					0	0	0			REV__nc|ENSG00000198604|Q9NRL2-2|BAZ1A	REV__nc|ENSG00000198604|Q9NRL2-2|BAZ1A	MULTI-MATCH	OvCa9_classI_Rep2	2		3	554.620905	1660.84088	0.21831	0.00012108	0.57567	0.00031928	0.79398	0.00044036	555.28993564224	86.259	1.282	84.768	84.097	85.379	-1.4906	0.029221	-0.00017681	NaN	1.4188	36	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30977	+		11253	23034	9258	9268							0.036897556792609976
FIWYRRYMRDR	11	Unmodified	_FIWYRRYMRDR_					0	0	0			REV__nc|ENSG00000198604|Q9NRL2-2|BAZ1A	REV__nc|ENSG00000198604|Q9NRL2-2|BAZ1A	MULTI-MATCH	OvCa9_classI_Rep3	3		3	554.620905	1660.84088	-1.4501	-0.00080426	2.2904	0.0012703	0.84028	0.00046604	555.2907865897446	87.001	0.86108	84.825	84.38	85.241	-2.1768	0.085771	0.0026762	NaN	1.4188	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58523	+		11254	23034	9258	9268							0.036897556792609976
FIYAGFVPAG	10	Unmodified	_FIYAGFVPAG_					0	0	0			REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|199|2|anti-sense	REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|199|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.8143310546875	2	521.273835	1040.53312	-0.30086	-0.00015683	-1.5632	-0.00081486	-1.8641	-0.00097169	521.2729400513822	68.855	0.59048	65.365	65.064	65.654	-3.4902					17	11	2	0	0	0	0.026839	1	5162	5162		19.36	0	1	57994	+		11255	28383	9259	9269	12135	12135					0.014472594198878141
FIYLVMGFK	9	Unmodified	_FIYLVMGFK_					0	0	0			REV__ENST00000325222.8_1_7:148427111-148427150:+|nuORF	REV__ENST00000325222.8_1_7:148427111-148427150:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	559.8056030273438	2	559.309364	1116.60417	1.4444	0.00080789	-2.6809	-0.0014994	-1.2364	-0.00069153	559.8092706804548	142.48	0.54892	142.48	142.23	142.78	0					19	10	3	0	0	0	0.22913	1	16655	16655		71.378	5.5747	1	234370	+		11256	24483	9260	9270	12136	12136					0.050536361330614454
FIYNFIYTL	9	Unmodified	_FIYNFIYTL_					0	0	0			REV__tr|A0A7D6ZZ20|A0A7D6ZZ20_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18605PE=4SV=1	REV__tr|A0A7D6ZZ20|A0A7D6ZZ20_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18605PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	596.3233032226562	2	597.3157	1192.61685	0.31524	0.00018829	3.4772	0.002077	3.7924	0.0022653	597.3169868037116	90.894	0.87473	88.319	87.853	88.727	-2.575					32	16	3	0	0	0	0.027462	1	7891	7891		47.657	13.485	1	64302	+		11257	32396	9261	9271	12137	12137					0.028243707969522802
FIYVINKLYMK	11	Unmodified	_FIYVINKLYMK_					0	0	0		tr|A0A7D6ZRL7|A0A7D6ZRL7_9CLOTDUF1700domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12865PE=4SV=1	tr|A0A7D6ZRL7|A0A7D6ZRL7_9CLOTDUF1700domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12865PE=4SV=1	tr|A0A7D6ZRL7|A0A7D6ZRL7_9CLOTDUF1700domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12865PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	477.9398498535156	3	477.94047	1430.79958	-0.40384	-0.00019301	-0.29633	-0.00014163	-0.70018	-0.00033464	477.94034511259724	45.725	1.1969	43.015	42.747	43.943	-2.7097					72	23	4	0	0	0	0.72477	1	2682	2682		18.531	1.3643	1	323790			11258	35717	9262	9272	12138	12138					0.10141181867243176
FIYYLVDPD	9	Unmodified	_FIYYLVDPD_					0	0	0			REV__ENSG00000198218|ENST00000395443|QRICH1	REV__ENSG00000198218|ENST00000395443|QRICH1	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.3094482421875	2	572.78169	1143.54883	1.1658	0.00066775	1.6396	0.00093915	2.8054	0.0016069	572.7826268969336	131.04	0.66498	131.04	130.68	131.34	0					18	13	2	0	0	0	0.027408	1	15203	15203		47.916	0	1	69122	+		11259	23003	9263	9273	12139	12139					-0.017204988537059762
FKAEILDLHTG	11	Unmodified	_FKAEILDLHTG_					0	0	0			REV__ENSG00000154237|ENST00000388948|LRRK1;REV__ENST00000531270.5_1_15:101565016-101589971:+|nuORF	REV__ENSG00000154237|ENST00000388948|LRRK1	MULTI-MSMS	OvCa9_classI_Rep3	3	622.334716796875	2	622.337695	1242.66084	-4.541	-0.002826	2.7022	0.0016817	-1.8388	-0.0011443	622.3392173202388	154.08	1.2081	153.07	152.74	153.95	-1.0076					67	24	4	0	0	0	0.72064	1	13247	13247		22.58	0.61977	1	199770	+		11260	20369;27215	9264	9274	12140	12140					0.0492135522326862
FKAKMLATLFL	11	Unmodified	_FKAKMLATLFL_					0	0	0		sp|P16729|MCP_HCMVAMajorcapsidproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=MCPPE=1SV=1;sp|F5HGT1|MCP_HCMVMMajorcapsidproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=MCPPE=3SV=1	sp|P16729|MCP_HCMVAMajorcapsidproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=MCPPE=1SV=1	sp|P16729|MCP_HCMVAMajorcapsidproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=MCPPE=1SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	641.882080078125	2	641.883227	1281.7519	-4.6434	-0.0029805	3.6435	0.0023387	-0.99994	-0.00064185	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.67529	1	15614	15614		37.812	15.852	1	543390			11261	32876	9265	9275	12141	12141					0.12229527667068396
FKALINFL	8	Unmodified	_FKALINFL_					0	0	0			REV__ENST00000481409.1_1_2:85866466-85866639:+|nuORF	REV__ENST00000481409.1_1_2:85866466-85866639:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	484.28045654296875	2	483.294571	964.574589	-1.5129	-0.00073119	-2.7987	-0.0013526	-4.3116	-0.0020838	483.29303736893036	84.635	1.2528	83.089	82.64	83.893	-1.5462					70	24	4	0	0	0	0.028476	1	7386	7386		35.201	6.0512	1	286910	+		11262	21413	9266	9276	12142	12142					0.09088440179220925
FKALRSDLRR	10	Unmodified	_FKALRSDLRR_					0	0	0			REV__ENST00000398532.8_2_17:38292662-38292800:+|nuORF	REV__ENST00000398532.8_2_17:38292662-38292800:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	421.2557678222656	3	421.254439	1260.74149	2.0308	0.00085549	1.2922	0.00054433	3.323	0.0013998	421.25488377471635	64.14	1.1115	61.147	60.786	61.898	-2.9933					53	21	3	0	0	0	0.73063	1	2481	2481		27.047	0.29761	1	105900	+		11263	25377	9267	9277	12143	12143					0.12154681056813388
FKCHDVVI	8	Unmodified	_FKCHDVVI_					0	0	0		ENSG00000151445|ENST00000557658|VIPAS39;nc|ENSG00000151445|Q9H9C1-2|VIPAS39	ENSG00000151445|ENST00000557658|VIPAS39	ENSG00000151445|ENST00000557658|VIPAS39	MULTI-MSMS	OvCa9_classI_Rep2	2	480.7502136230469	2	480.752213	959.489873	-1.0394	-0.00049969	-3.1499	-0.0015143	-4.1893	-0.002014	480.7505959208067	48.711	0.59871	45.951	45.578	46.177	-2.7603					36	11	4	0	0	0	0.61758	2	3040	3040;3045		60.294	3.0877	1	554530			11264	5551	9268	9278	12144;12145	12144					0.008507463709747753
FKCHDVVI	8	Unmodified	_FKCHDVVI_					0	0	0		ENSG00000151445|ENST00000557658|VIPAS39;nc|ENSG00000151445|Q9H9C1-2|VIPAS39	ENSG00000151445|ENST00000557658|VIPAS39	ENSG00000151445|ENST00000557658|VIPAS39	MULTI-MSMS	OvCa9_classI_Rep2	2	480.7502746582031	2	480.752213	959.489873	-1.1714	-0.00056314	-3.1546	-0.0015166	-4.326	-0.0020797	480.7505752304628	49.16	2.6747	46.399	46.127	48.802	-2.7603					122	53	4	0	0	0	0.66704	1	3100	3100		50.025	3.2581	1	594120			11265	5551	9268	9278	12146	12146					0.008507463709747753
FKCKKCVKSF	10	Carbamidomethyl (C)	_FKCKKC(Carbamidomethyl (C))VKSF_	FKC(0.023)KKC(0.977)VKSF		FKC(-16)KKC(16)VKSF		0	1	0		nc|ENSG00000167232|Q05481-2|ZNF91;ENSG00000167232|ENST00000300619|ZNF91	nc|ENSG00000167232|Q05481-2|ZNF91	nc|ENSG00000167232|Q05481-2|ZNF91	MULTI-MSMS	OvCa9_classI_Rep4_	4	425.5643615722656	3	425.563116	1273.66752	-0.64889	-0.00027614	0.73638	0.00031338	0.087486	3.7231E-05	425.5634355212521	71.059	2.9087	67.603	67.251	70.16	-3.4563					178	59	6	0	0	0	0.48398	2	5380	5380;5465		56.434	9.7405	2	1431800			11266	6774	9269	9279	12147;12148	12147	67				0.041632535786220615
FKCYERRRRRR	11	Unmodified	_FKCYERRRRRR_					0	0	0			REV__ENSG00000147119|ENST00000276055|CHST7	REV__ENSG00000147119|ENST00000276055|CHST7	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.2825927734375	3	542.639181	1624.89571	-0.52156	-0.00028302	-2.1327	-0.0011573	-2.6542	-0.0014403	542.9723803907234	33.732	0.48863	33.732	33.384	33.873	0					13	9	2	0	0	0	0.026401	1	1565	1565		12.433	0.50046	1	9817	+		11267	20045	9270	9280	12149	12149					0.10826187270527043
FKDIITKV	8	Unmodified	_FKDIITKV_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000070371|ENST00000427926|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa99_classI_Rep5	1	482.2948303222656	2	482.29731	962.580068	1.5127	0.00072959	0.56166	0.00027089	2.0744	0.0010005	482.2974046087433	81.711	1.2791	81.711	81.329	82.609	0					74	30	4	0	0	0	0.15183	2	8425	8416;8425		132.76	31.157	1	2955400			11268	4906;1426	9271	9281	12150;12151	12151					0.09728118971031563
FKDKYKQL	8	Unmodified	_FKDKYKQL_					0	0	0		ENSG00000151729|ENST00000281456|SLC25A4;SLC25A4|p.T139Qfs*7|1|0.31|ENSG00000151729|chr4:185145065-185145087|GGACCAGGTTGGCTGCTGATGTG/-|frameshift_variant;ENSG00000151475|ENST00000281154|SLC25A31	ENSG00000151729|ENST00000281456|SLC25A4;ENSG00000151475|ENST00000281154|SLC25A31	ENSG00000151729|ENST00000281456|SLC25A4	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2945556640625	2	535.305667	1068.59678	0.31373	0.00016794	1.257	0.00067289	1.5708	0.00084084	535.3062123061062	101.62	0.9744	101.62	101.15	102.12	0					36	22	2	0	0	0	0.028476	1	11302	11302		27.882	0	1	1495500			11269	5579;5557	9272	9282	12152	12152					0.06522619856991696
FKDKYKQL	8	Unmodified	_FKDKYKQL_					0	0	0		ENSG00000151729|ENST00000281456|SLC25A4;SLC25A4|p.T139Qfs*7|1|0.31|ENSG00000151729|chr4:185145065-185145087|GGACCAGGTTGGCTGCTGATGTG/-|frameshift_variant;ENSG00000151475|ENST00000281154|SLC25A31	ENSG00000151729|ENST00000281456|SLC25A4;ENSG00000151475|ENST00000281154|SLC25A31	ENSG00000151729|ENST00000281456|SLC25A4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	535.305667	1068.59678	-1.9439	-0.0010406	1.222	0.00065416	-0.72183	-0.0003864	535.3061640821468	102.26	1.4811	101.58	101.29	102.77	-0.68459	-0.035584	0.00084001	NaN	54.776	61	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84028			11270	5579;5557	9272	9282							0.06522619856991696
FKDKYKQL	8	Unmodified	_FKDKYKQL_					0	0	0		ENSG00000151729|ENST00000281456|SLC25A4;SLC25A4|p.T139Qfs*7|1|0.31|ENSG00000151729|chr4:185145065-185145087|GGACCAGGTTGGCTGCTGATGTG/-|frameshift_variant;ENSG00000151475|ENST00000281154|SLC25A31	ENSG00000151729|ENST00000281456|SLC25A4;ENSG00000151475|ENST00000281154|SLC25A31	ENSG00000151729|ENST00000281456|SLC25A4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	535.305667	1068.59678	0.7841	0.00041973	-1.5569	-0.00083339	-0.77276	-0.00041366	535.3047106447013	103.12	1.3636	101.6	101.26	102.62	-1.5211	-0.013711	-0.0021351	NaN	54.776	53	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135320			11271	5579;5557	9272	9282							0.06522619856991696
FKDKYKQL	8	Unmodified	_FKDKYKQL_					0	0	0		ENSG00000151729|ENST00000281456|SLC25A4;SLC25A4|p.T139Qfs*7|1|0.31|ENSG00000151729|chr4:185145065-185145087|GGACCAGGTTGGCTGCTGATGTG/-|frameshift_variant;ENSG00000151475|ENST00000281154|SLC25A31	ENSG00000151729|ENST00000281456|SLC25A4;ENSG00000151475|ENST00000281154|SLC25A31	ENSG00000151729|ENST00000281456|SLC25A4	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	535.305667	1068.59678	-1.4083	-0.00075387	0.98402	0.00052675	-0.42427	-0.00022712	535.3060453008243	103.77	0.94466	101.65	101.43	102.38	-2.1192	0.038234	0.0005852	NaN	54.776	32	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101080			11272	5579;5557	9272	9282							0.06522619856991696
FKDSEKQLL	9	Unmodified	_FKDSEKQLL_					0	0	0		tr|A0A7D7A5T1|A0A7D7A5T1_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07410PE=4SV=1	tr|A0A7D7A5T1|A0A7D7A5T1_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07410PE=4SV=1	tr|A0A7D7A5T1|A0A7D7A5T1_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07410PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	554.3058471679688	2	554.305864	1106.59717	-0.25464	-0.00014115	-2.3591	-0.0013077	-2.6138	-0.0014488	554.3044394217088	33.319	0.99503	30.609	30.272	31.267	-2.7097					42	19	3	0	0	0	0.42676	1	1189	1189		49.442	5.0644	1	97267			11273	36177	9273	9283	12153	12153					0.04813994786195508
FKEFKRQRYRW	11	Unmodified	_FKEFKRQRYRW_					0	0	0			REV__ENST00000563686.5_1_18:52942938-53070719:-|nuORF	REV__ENST00000563686.5_1_18:52942938-53070719:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	548.6334838867188	3	548.635431	1642.88446	-0.084085	-4.6132E-05	-4.088	-0.0022428	-4.172	-0.0022889	548.6332874572265	31.832	2.216	31.832	31.608	33.824	0					83	44	2	0	0	0	0.72582	2	1354	1354;1381		1.3219	0.95051	1	6350300	+		11274	27660	9274	9284	12154;12155	12154					0.0887368844807952
FKEFKRQRYRW	11	Unmodified	_FKEFKRQRYRW_					0	0	0			REV__ENST00000563686.5_1_18:52942938-53070719:-|nuORF	REV__ENST00000563686.5_1_18:52942938-53070719:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.306396484375	3	548.635431	1642.88446	-0.084085	-4.6132E-05	-4.088	-0.0022428	-4.172	-0.0022889	548.6332874572265	31.832	2.216	31.832	31.608	33.824	0					83	44	2	0	0	0	0.02653	1	1391	1391		6.3209	3.2949	1	6350300	+		11275	27660	9274	9284	12156	12156					0.0887368844807952
FKEPQQVVR	9	Unmodified	_FKEPQQVVR_					0	0	0		ENST00000533200.5_1_11:43904193-43919192:+|nuORF;nc|ENSG00000166199|Q96Q83-2|ALKBH3;ENSG00000166199|ENST00000302708|ALKBH3	ENST00000533200.5_1_11:43904193-43919192:+|nuORF	ENST00000533200.5_1_11:43904193-43919192:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.794189453125	2	565.819473	1129.62439	2.8646	0.0016209	-3.1254	-0.0017684	-0.26078	-0.00014756	565.8180120842874	75.201	0.36843	75.201	74.962	75.33	0					19	8	3	0	0	0	0.027462	1	7450	7450		38.806	0	1	408530			11276	6651	9275	9285	12157	12157					0.06476523117225952
FKFEANLR	8	Unmodified	_FKFEANLR_					0	0	0			REV__tr|A0A553SGR0|A0A553SGR0_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11325PE=4SV=1	REV__tr|A0A553SGR0|A0A553SGR0_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11325PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.3334350585938	2	512.782359	1023.55016	0.38808	0.000199	0.84978	0.00043575	1.2379	0.00063475	512.7825793703211	72.654	0.35211	72.654	72.412	72.764	0					15	8	2	0	0	0	0.028476	1	7088	7088		65.803	0	1	258390	+		11277	29729	9276	9286	12158	12158					0.039331800256945826
FKFEKHHRQ	9	Unmodified	_FKFEKHHRQ_					0	0	0			REV__BMP6|p.Y490Sfs*10|1|0.09|ENSG00000153162|chr6:7880270-7880270|A/-|frameshift_variant	REV__BMP6|p.Y490Sfs*10|1|0.09|ENSG00000153162|chr6:7880270-7880270|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	419.5597839355469	3	419.559751	1255.65742	0.161	6.7547E-05	-1.2948	-0.00054326	-1.1338	-0.00047572	419.55954588622086	43.112	1.3712	43.112	42.709	44.08	0					104	31	6	0	0	0	0.42576	1	2850	2850		49.536	6.6718	1	3225400	+		11278	15704	9277	9287	12159	12159					0.03982149959938397
FKFLGTLS	8	Unmodified	_FKFLGTLS_					0	0	0		nc|ENSG00000124782|Q92766|RREB1;ENSG00000124782|ENST00000379938|RREB1;nc|ENSG00000124782|Q92766-4|RREB1	nc|ENSG00000124782|Q92766|RREB1	nc|ENSG00000124782|Q92766|RREB1	MULTI-SECPEP	OvCa9_classI_Rep3	3	456.780517578125	2	456.763104	911.511654	0.27189	0.00012419	-0.33102	-0.0001512	-0.059129	-2.7008E-05	456.7628407837953	79.928	0.65177	77.588	77.412	78.063	-2.3399					15	12	2	0	0	0	0.028476	1	4395	4395		38.806	0	1	30783			11279	3678	9278	9288	12160	12160					0.05235874391212292
FKFRNIKI	8	Unmodified	_FKFRNIKI_					0	0	0		tr|A0A553SS16|A0A553SS16_NIACIAminoacidABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_02255PE=4SV=1	tr|A0A553SS16|A0A553SS16_NIACIAminoacidABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_02255PE=4SV=1	tr|A0A553SS16|A0A553SS16_NIACIAminoacidABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_02255PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	533.8103637695312	2	533.332019	1064.64948	-0.37896	-0.00020211	-0.87499	-0.00046666	-1.254	-0.00066877	533.3317086987017	113.2	0.69195	113.08	112.82	113.51	-0.12174					15	13	2	0	0	0	0.028476	1	10758	10758		40.573	13.777	1	10860			11280	34322	9279	9289	12161	12161					0.11974622710454241
FKGILIPL	8	Unmodified	_FKGILIPL_					0	0	0		ENSG00000112578|ENST00000230340|BYSL	ENSG00000112578|ENST00000230340|BYSL	ENSG00000112578|ENST00000230340|BYSL	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.78497314453125	2	450.799489	899.584425	-0.19341	-8.719E-05	1.1059	0.00049855	0.91252	0.00041136	450.7998782894803	42.481	0.25349	42.481	42.286	42.539	0					10	5	3	0	0	0	0.028476	1	2723	2723		15.636	0	1	153690			11281	2911	9280	9290	12162	12162					0.13061628184607343
FKGLLWYI	8	Unmodified	_FKGLLWYI_					0	0	0		nc|ENSG00000261832|Q13286-5|CLN3;ENST00000565140.5_3_16:28489128-28499933:-|nuORF;ENST00000564574.5_2_16:28493646-28503072:-|nuORF;nc|ENSG00000261832|Q13286-4|CLN3;nc|ENSG00000261832|Q13286-6|CLN3;nc|ENSG00000261832|Q13286-2|CLN3;nc|ENSG00000261832|Q13286-7|CLN3;ENSG00000188603|ENST00000636147|CLN3	nc|ENSG00000261832|Q13286-5|CLN3	nc|ENSG00000261832|Q13286-5|CLN3	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.314453125	2	520.302396	1038.59024	-0.9236	-0.00048055	2.3112	0.0012025	1.3876	0.00072198	520.3039359053853	52.312	0.54567	49.499	49.096	49.642	-2.8129					14	10	2	0	0	0	0.028476	1	3492	3492		31.579	16.714	1	9532.5			11282	8483	9281	9291	12163	12163					0.07248726696252561
FKGPLILIDGP	11	Unmodified	_FKGPLILIDGP_					0	0	0			REV__ENSG00000187527|ENST00000342358|ATP13A5	REV__ENSG00000187527|ENST00000342358|ATP13A5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	585.744873046875	2	585.350074	1168.6856	-0.86711	-0.00050756	-3.4823	-0.0020384	-4.3494	-0.0025459	585.3478895931628	101.85	0.88222	99.593	99.31	100.19	-2.2607					41	16	3	0	0	0	0.025298	1	9177	9177		31.53	0	1	137070	+		11283	22644	9282	9292	12164	12164					0.10800035096644933
FKGPLILIDGP	11	Unmodified	_FKGPLILIDGP_					0	0	0			REV__ENSG00000187527|ENST00000342358|ATP13A5	REV__ENSG00000187527|ENST00000342358|ATP13A5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	585.350074	1168.6856	-1.1612	-0.00067973	-3.1724	-0.001857	-4.3336	-0.0025367	585.3481262826606	100.42	0.69468	99.59	99.311	100.01	-0.83051	-0.027932	-0.00045947	NaN	31.53	39	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122290	+		11284	22644	9282	9292							0.10800035096644933
FKGRQLIAK	9	Unmodified	_FKGRQLIAK_					0	0	0			REV__ENSG00000167077|ENST00000401548|MEI1	REV__ENSG00000167077|ENST00000401548|MEI1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.757568359375	2	530.834926	1059.6553	-1.6463	-0.00087391	3.5815	0.0019012	1.9352	0.0010273	530.8369202261075	65.688	0.34103	62.203	62.082	62.423	-3.4854					9	6	2	0	0	0	0.027462	1	4726	4726		45.952	14.422	1	18395	+		11285	21249	9283	9293	12165	12165					0.12785721222144275
FKGRQLIAK	9	Unmodified	_FKGRQLIAK_					0	0	0			REV__ENSG00000167077|ENST00000401548|MEI1	REV__ENSG00000167077|ENST00000401548|MEI1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.834926	1059.6553	-0.78607	-0.00041728	0.9145	0.00048545	0.12843	6.8173E-05	530.8353678088528	64.627	0.63542	61.903	61.545	62.181	-2.7245	-0.21141	0.0012312	NaN	45.952	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23388	+		11286	21249	9283	9293							0.12785721222144275
FKGRQLIAK	9	Unmodified	_FKGRQLIAK_					0	0	0			REV__ENSG00000167077|ENST00000401548|MEI1	REV__ENSG00000167077|ENST00000401548|MEI1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	530.834926	1059.6553	1.2927	0.00068619	-1.1332	-0.00060156	0.15943	8.4632E-05	530.8342677287937	65.182	0.7598	62.237	61.945	62.705	-2.9459	0.12244	-0.00094278	NaN	45.952	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18860	+		11287	21249	9283	9293							0.12785721222144275
FKGTTKPVNW	10	Unmodified	_FKGTTKPVNW_					0	0	0		nc|ENSG00000112697|Q9NV96-2|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A;nc|ENSG00000112697|Q9NV96-3|TMEM30A;TMEM30A|p.R226L|1|0.09|ENSG00000112697|chr6:75259355-75259355|C/A|missense_variant	nc|ENSG00000112697|Q9NV96-2|TMEM30A	nc|ENSG00000112697|Q9NV96-2|TMEM30A	MULTI-MSMS	OvCa99_classI_Rep5	1	589.323486328125	2	589.321848	1176.62914	1.1429	0.00067356	-0.74792	-0.00044076	0.39503	0.0002328	589.3206956383084	132.9	1.2249	132.9	131.99	133.22	0					43	25	3	0	0	0	0.65849	1	15465	15465		35.152	0.97948	1	351380			11288	2920	9284	9294	12166	12166					0.04789407259977452
FKHLSKLL	8	Unmodified	_FKHLSKLL_					0	0	0		nc|ENSG00000145246|Q9P241-2|ATP10D;ENSG00000145246|ENST00000273859|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.3226623535156	2	493.313295	984.612037	-0.63135	-0.00031145	-3.2073	-0.0015822	-3.8386	-0.0018936	493.3115606470464	55.086	0.55472	55.086	54.718	55.273	0					20	12	2	0	0	0	0.028476	1	4493	4493		42.396	6.7778	1	400130			11289	5212	9285	9295	12167	12167					0.11911531444843604
FKIDSNAKKVY	11	Unmodified	_FKIDSNAKKVY_					0	0	0		tr|A0A7D6W1Y6|A0A7D6W1Y6_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_04465PE=4SV=1	tr|A0A7D6W1Y6|A0A7D6W1Y6_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_04465PE=4SV=1	tr|A0A7D6W1Y6|A0A7D6W1Y6_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_04465PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	438.24725341796875	3	438.246839	1311.71869	1.181	0.00051758	-1.0337	-0.00045303	0.14727	6.4542E-05	438.2463941604818	43.965	2.0387	41.255	40.758	42.797	-2.7097					118	40	4	0	0	0	0.70315	1	2454	2454		28.577	0.93281	1	1317400			11290	35418	9286	9296	12168	12168					0.07529617148702528
FKIDSNAKKVY	11	Unmodified	_FKIDSNAKKVY_					0	0	0		tr|A0A7D6W1Y6|A0A7D6W1Y6_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_04465PE=4SV=1	tr|A0A7D6W1Y6|A0A7D6W1Y6_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_04465PE=4SV=1	tr|A0A7D6W1Y6|A0A7D6W1Y6_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_04465PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	438.24822998046875	3	438.246839	1311.71869	-0.94426	-0.00041382	0.77312	0.00033882	-0.17114	-7.5002E-05	438.24727429837515	44.073	2.9282	41.065	40.326	43.254	-3.0074					162	56	4	0	0	0	0.69015	1	2198	2198		33.039	1.4051	1	4884200			11291	35418	9286	9296	12169	12169					0.07529617148702528
FKILLLRH	8	Unmodified	_FKILLLRH_					0	0	0		ENST00000356244.7_2_22:41682124-41682229:-|nuORF	ENST00000356244.7_2_22:41682124-41682229:-|nuORF	ENST00000356244.7_2_22:41682124-41682229:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3389892578125	2	520.342387	1038.67022	-0.11114	-5.783E-05	-4.0332	-0.0020986	-4.1443	-0.0021565	520.3401542748645	39.812	1.4362	37.102	36.805	38.241	-2.7097					67	28	4	0	0	0	0.75661	1	1999	1999		19.36	5.5846	1	306910			11292	10695	9287	9297	12170	12170					0.15243213090116114
FKILWKKLKKW	11	Unmodified	_FKILWKKLKKW_					0	0	0		ENSG00000137225|ENST00000398776|CAPN11	ENSG00000137225|ENST00000398776|CAPN11	ENSG00000137225|ENST00000398776|CAPN11	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.29852294921875	3	506.662147	1516.96461	1.3983	0.00070848	4.1409	0.002098	5.5393	0.0028065	506.6641093611556	109.79	0.26955	109.79	109.73	110	0					9	5	2	0	0	0	0.026512	1	12444	12444		1.1482	0	1	48979			11293	4570	9288	9298	12171	12171					0.226807817891995
FKIQEIKIQ	9	Unmodified	_FKIQEIKIQ_					0	0	0			REV__nc|ENSG00000116127|Q8TCU4-2|ALMS1	REV__nc|ENSG00000116127|Q8TCU4-2|ALMS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.3567504882812	2	573.847699	1145.68084	-0.10119	-5.8069E-05	-2.705	-0.0015523	-2.8062	-0.0016103	573.8459610255775	32.328	0.34835	32.328	32.204	32.553	0					9	6	2	0	0	0	0.02709	1	1427	1427		93.143	15.826	1	103870	+		11294	18284	9289	9299	12172	12172					0.11383150953884069
FKITKTMVI	9	Unmodified	_FKITKTMVI_					0	0	0			REV__ENST00000446295.1_1_X:47372338-47372371:-|nuORF	REV__ENST00000446295.1_1_X:47372338-47372371:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.289794921875	2	540.827921	1079.64129	2.3391	0.0012651	-4.4427	-0.0024027	-2.1036	-0.0011377	540.8254261090906	120.81	0.27131	120.81	120.74	121.01	0					10	5	2	0	0	0	0.027459	1	13911	13911		44.377	17.684	1	125000	+		11295	25902	9290	9300	12173	12173					0.1046530767882814
FKKCRIPQN	9	Unmodified	_FKKCRIPQN_					0	0	0		tr|A0A7D6ZS57|A0A7D6ZS57_9CLOTDUF4046domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06450PE=4SV=1	tr|A0A7D6ZS57|A0A7D6ZS57_9CLOTDUF4046domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06450PE=4SV=1	tr|A0A7D6ZS57|A0A7D6ZS57_9CLOTDUF4046domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06450PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3160400390625	2	567.316043	1132.61753	2.0704	0.0011746	-3.3753	-0.0019149	-1.3049	-0.00074028	567.3139739099872	57.536	1.95	54.41	53.788	55.738	-3.1264					89	52	3	0	0	0	0.6653	1	1771	1771		24.203	4.206	1	66904			11296	35730	9291	9301	12174	12174					0.056528869650264824
FKKKQYMMKVT	11	Unmodified	_FKKKQYMMKVT_					0	0	0			REV__SERPINB1-RNPEP|1|fusion;REV__nc|ENSG00000021355|P30740-2|SERPINB1	REV__nc|ENSG00000021355|P30740-2|SERPINB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.93609619140625	3	477.933209	1430.7778	-0.69786	-0.00033353	4.4586	0.0021309	3.7608	0.0017974	477.935332489649	71.492	1.7083	68.035	67.677	69.386	-3.4563					108	34	5	0	0	0	0.68059	1	5449	5449		36.318	8.6737	1	918710	+		11297	29353;16544	9292	9302	12175	12175					0.0796405384701302
FKKLLEKNS	9	Unmodified	_FKKLLEKNS_					0	0	0			REV__tr|A0A7D6VR79|A0A7D6VR79_9CLOTAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_04520PE=4SV=1	REV__tr|A0A7D6VR79|A0A7D6VR79_9CLOTAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_04520PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	553.82958984375	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.67509	1	12019	12019		23.042	0.46283	1	308210	+		11298	31395	9293	9303	12176	12176					0.10094577919812764
FKKRSLRLYKH	11	Unmodified	_FKKRSLRLYKH_					0	0	0			REV__ENST00000490741.1_1_22:39529898-39530769:-|nuORF	REV__ENST00000490741.1_1_22:39529898-39530769:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	492.63568115234375	3	492.636772	1474.88849	-4.4123	-0.0021737	-0.46274	-0.00022796	-4.8751	-0.0024016	492.6364518280441	160.52	2.4825	160.29	159.35	161.83	-0.22697					136	50	4	0	0	0	0.7257	2	16380	16380;16404		6.3209	0.31984	1	91160	+		11299	17395	9294	9304	12177;12178	12177					0.1700377794177257
FKKTLVVCRL	10	Unmodified	_FKKTLVVCRL_					0	0	0		ENST00000222584.7_1_7:21551120-21551243:+|nuORF	ENST00000222584.7_1_7:21551120-21551243:+|nuORF	ENST00000222584.7_1_7:21551120-21551243:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	402.91925048828125	3	402.917888	1205.73183	1.4006	0.00056434	1.8552	0.00074751	3.2559	0.0013118	402.91856565389173	70.933	2.693	68.214	67.801	70.494	-2.7196					144	53	4	0	0	0	0.66944	1	3272	3272		33.922	3.3528	1	338740			11300	9699	9295	9305	12179	12179					0.1371977672711182
FKLLYDLAD	9	Unmodified	_FKLLYDLAD_					0	0	0		ENST00000559758.5_1_15:76566725-76584849:-|nuORF;nc|ENSG00000140374|P13804-2|ETFA;ENST00000559075.5_1_15:76523658-76603729:-|nuORF;ENSG00000140374|ENST00000557943|ETFA	ENST00000559758.5_1_15:76566725-76584849:-|nuORF	ENST00000559758.5_1_15:76566725-76584849:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.3456420898438	2	549.297507	1096.58046	1.5763	0.00086587	4.2019	0.0023081	5.7782	0.003174	549.301125907971	125.59	0.27296	125.59	125.49	125.76	0					7	5	2	0	0	0	0.027426	1	14510	14510		56.721	30.028	1	44769			11301	4834	9296	9306	12180	12180					0.03603493900232024
FKLNGEFSLLP	11	Unmodified	_FKLNGEFSLLP_					0	0	0		tr|A0A7D7A2X2|A0A7D7A2X2_9CLOTPhagetailtapemeasureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10220PE=4SV=1	tr|A0A7D7A2X2|A0A7D7A2X2_9CLOTPhagetailtapemeasureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10220PE=4SV=1	tr|A0A7D7A2X2|A0A7D7A2X2_9CLOTPhagetailtapemeasureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10220PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	632.8523559570312	2	632.850438	1263.68632	1.2659	0.00080115	-0.27576	-0.00017452	0.99017	0.00062663	632.8500489645866	151.19	0.71045	151.19	150.84	151.55	0					37	12	4	0	0	0	0.67529	1	17713	17713		37.812	0	1	131540			11302	36093	9297	9307	12181	12181					0.06502829745727468
FKLNKEWILRR	11	Unmodified	_FKLNKEWILRR_					0	0	0			REV__ENST00000480760.1_1_1:150720322-150737170:-|nuORF	REV__ENST00000480760.1_1_1:150720322-150737170:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	501.6329345703125	3	501.636661	1501.88815	-5.5139	-0.002766	0.35993	0.00018055	-5.154	-0.0025854	501.63686894791874	162.29	1.9089	162.06	160.59	162.5	-0.22696					90	37	3	0	0	0	0.72545	1	16550	16550		9.6461	0	1	106580	+		11303	20811	9298	9308	12182	12182					0.15728358221917915
FKLVQDTF	8	Unmodified	_FKLVQDTF_					0	0	0			REV__ENSG00000106304|ENST00000682466|SPAM1	REV__ENSG00000106304|ENST00000682466|SPAM1	MULTI-MSMS	OvCa9_classI_Rep2	2	499.27069091796875	2	499.271293	996.528032	1.4485	0.00072321	-1.6267	-0.00081217	-0.17819	-8.8963E-05	499.2703458737483	88.651	1.6275	87.284	86.69	88.318	-1.3676					91	32	4	0	0	0	0.47599	1	7786	7786		79.939	3.1651	1	1151300	+		11304	17792	9299	9309	12183	12183					0.02962955557291025
FKNEKIMQR	9	Unmodified	_FKNEKIMQR_					0	0	0			REV__tr|A0A7D6W127|A0A7D6W127_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02170PE=4SV=1	REV__tr|A0A7D6W127|A0A7D6W127_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02170PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	597.329345703125	2	597.326608	1192.63866	2.4989	0.0014926	0.60576	0.00036184	3.1046	0.0018545	597.3268316048669	80.17	0.75207	80.17	79.907	80.659	0					29	17	2	0	0	0	0.49652	1	8214	8214		42.864	6.4175	1	1234900	+		11305	31873	9300	9310	12184	12184					0.05004852273850702
FKNEKIMQR	9	Unmodified	_FKNEKIMQR_					0	0	0			REV__tr|A0A7D6W127|A0A7D6W127_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02170PE=4SV=1	REV__tr|A0A7D6W127|A0A7D6W127_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02170PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	597.326608	1192.63866	2.4989	0.0014926	0.60576	0.00036184	3.1046	0.0018545	597.3268316048669	80.17	0.75207	80.17	79.907	80.659	0	0.0083771	0.00074544	NaN	42.864	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1234900	+		11306	31873	9300	9310							0.05004852273850702
FKNEKIMQR	9	Unmodified	_FKNEKIMQR_					0	0	0			REV__tr|A0A7D6W127|A0A7D6W127_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02170PE=4SV=1	REV__tr|A0A7D6W127|A0A7D6W127_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02170PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	597.326608	1192.63866	-0.056204	-3.3572E-05	-0.56371	-0.00033672	-0.61991	-0.00037029	597.326100969371	81.801	0.88448	80.153	79.919	80.804	-1.6485	-0.0083771	-0.00065168	NaN	42.864	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46991	+		11307	31873	9300	9310							0.05004852273850702
FKNIIWIML	9	Unmodified	_FKNIIWIML_					0	0	0		tr|A0A7D6VRE4|A0A7D6VRE4_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01310PE=4SV=1	tr|A0A7D6VRE4|A0A7D6VRE4_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01310PE=4SV=1	tr|A0A7D6VRE4|A0A7D6VRE4_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01310PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3404541015625	2	589.343738	1176.67292	-4.3129	-0.0025418	2.8541	0.001682	-1.4588	-0.00085974	589.3453728975387	144.79	3.9151	143.81	141.71	145.63	-0.97299					242	78	5	0	0	0	0.6959	1	12158	12158		19.36	0.25645	1	192050			11308	34922	9301	9311	12185	12185					0.09165300432778167
FKNIKLIM	8	Unmodified	_FKNIKLIM_					0	0	0		tr|A0A553SM43|A0A553SM43_NIACI6-phospho-alpha-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_21870PE=3SV=1	tr|A0A553SM43|A0A553SM43_NIACI6-phospho-alpha-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_21870PE=3SV=1	tr|A0A553SM43|A0A553SM43_NIACI6-phospho-alpha-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_21870PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.25738525390625	2	503.809531	1005.60451	-0.28979	-0.000146	4.2118	0.0021219	3.922	0.0019759	503.81157836126255	67.662	0.69956	67.662	67.337	68.037	0					26	17	2	0	0	0	0.028476	1	6401	6401		42.474	0	1	319870			11309	33798	9302	9312	12186	12186					0.10193055852926136
FKNLLKQVLI	10	Unmodified	_FKNLLKQVLI_					0	0	0			REV__ENST00000503970.2_1_5:109200715-109202696:+|nuORF	REV__ENST00000503970.2_1_5:109200715-109202696:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	405.9313659667969	3	405.932303	1214.77508	0.1148	4.6601E-05	-2.3291	-0.00094545	-2.2143	-0.00089884	405.9313435099257	43.651	1.3057	43.651	43.312	44.618	0					88	29	5	0	0	0	0.59317	1	2882	2882		42.864	2.8061	1	3303700	+		11310	18124	9303	9313	12187	12187					0.17628289776052952
FKNPLPVA	8	Unmodified	_FKNPLPVA_					0	0	0			REV__tr|A0A553SRT0|A0A553SRT0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01615PE=4SV=1	REV__tr|A0A553SRT0|A0A553SRT0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01615PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	442.2903747558594	2	443.263271	884.511988	0.20911	9.269E-05	-4.4582	-0.0019761	-4.2491	-0.0018835	443.26105883675245	26.368	0.24977	26.368	26.242	26.492	0					6	4	2	0	0	0	0.028476	1	678	678		28.254	3.7503	1	27185	+		11311	30762	9304	9314	12188	12188					0.06511294111044208
FKNPLPVTL	9	Unmodified	_FKNPLPVTL_					0	0	0		nc|ENSG00000092295|P22735-2|TGM1;ENSG00000092295|ENST00000206765|TGM1	nc|ENSG00000092295|P22735-2|TGM1	nc|ENSG00000092295|P22735-2|TGM1	MULTI-MSMS	OvCa9_classI_Rep2	2	514.8103637695312	2	514.810585	1027.60662	0.28993	0.00014926	-1.4797	-0.00076179	-1.1898	-0.00061253	514.8099201043075	113.96	1.7767	113.84	113.47	115.24	-0.11777					99	35	4	0	0	0	0.030815	9	10817	10817;10822;10828;10834;10840;10846;10853;10859;10872		134.81	47.056	1	416770			11312	1892	9305	9315	12189;12190;12191;12192;12193;12194;12195;12196;12197	12189					0.0939180786238012
FKNPLPVTL	9	Unmodified	_FKNPLPVTL_					0	0	0		nc|ENSG00000092295|P22735-2|TGM1;ENSG00000092295|ENST00000206765|TGM1	nc|ENSG00000092295|P22735-2|TGM1	nc|ENSG00000092295|P22735-2|TGM1	MULTI-MSMS	OvCa9_classI_Rep3	3	514.8106689453125	2	514.810585	1027.60662	0.2235	0.00011506	-1.2565	-0.00064687	-1.033	-0.00053181	514.8100220050112	114.83	1.7269	113.77	113.4	115.13	-1.055					61	34	2	0	0	0	0.059253	7	8494	8490;8494;8500;8506;8512;8519;8525		113.41	43.784	1	447140			11313	1892	9305	9315	12198;12199;12200;12201;12202;12203;12204	12199					0.0939180786238012
FKNPLPVTL	9	Unmodified	_FKNPLPVTL_					0	0	0		nc|ENSG00000092295|P22735-2|TGM1;ENSG00000092295|ENST00000206765|TGM1	nc|ENSG00000092295|P22735-2|TGM1	nc|ENSG00000092295|P22735-2|TGM1	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.8109741210938	2	514.810585	1027.60662	0.21733	0.00011188	-0.71217	-0.00036663	-0.49484	-0.00025475	514.8099201928084	115.09	2.1184	113.69	112.99	115.11	-1.3977					90	41	5	0	0	0	0.1944	3	10700	10700;10724;10737		77.318	9.3337	1	518660			11314	1892	9305	9315	12205;12206;12207	12205					0.0939180786238012
FKPAKKKN	8	Unmodified	_FKPAKKKN_					0	0	0			REV__tr|A0A7D6ZVE2|A0A7D6ZVE2_9CLOT4Fe-4SbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03750PE=4SV=1	REV__tr|A0A7D6ZVE2|A0A7D6ZVE2_9CLOT4Fe-4SbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03750PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.8004150390625	2	480.803094	959.591636	-3.2353	-0.0015556	-1.1249	-0.00054087	-4.3603	-0.0020964	480.80242897085384	151.49	1.9682	150.06	149.63	151.6	-1.4344					128	43	5	0	0	0	0.73626	1	15073	15073		33.516	6.7195	1	1260100	+		11315	32249	9306	9316	12208	12208					0.1102236078503438
FKPGKWMI	8	Unmodified	_FKPGKWMI_					0	0	0		MTHFD1-CASK|1|fusion;MTHFD1-CASK|3|fusion;MTHFD1-CASK|2|fusion;ENSG00000100714|ENST00000652337|MTHFD1;MTHFD1|p.P917Afs*5|1|0.07|ENSG00000100714|chr14:64458242-64458243|-/T|frameshift_variant;ENST00000555252.5_1_14:64855058-64907131:+|nuORF;ENST00000413059.1_1_X:57420873-57421110:-|nuORF	MTHFD1-CASK|1|fusion	MTHFD1-CASK|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	503.7786560058594	2	503.780773	1005.54699	-3.0867	-0.001555	-1.0099	-0.00050878	-4.0966	-0.0020638	503.78006253314857	36.309	2.2758	33.6	32.75	35.026	-2.7097					126	45	4	0	0	0	0.7043	1	1504	1504		42.474	6.8562	1	296190			11316	14842	9307	9317	12209	12209					0.044442136473321625
FKPREHLS	8	Unmodified	_FKPREHLS_					0	0	0		ENST00000399410.7_1_16:16236589-16236823:+|nuORF	ENST00000399410.7_1_16:16236589-16236823:+|nuORF	ENST00000399410.7_1_16:16236589-16236823:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7846374511719	2	507.279983	1012.54541	-1.0865	-0.00055118	1.3776	0.00069885	0.29112	0.00014768	507.28021551248446	81.647	2.239	78.95	78.164	80.403	-2.6965					140	45	5	0	0	0	0.59148	1	6773	6773		65.803	12.452	1	2095800			11317	11388	9308	9318	12210	12210					0.03964295882940405
FKPREHLS	8	Unmodified	_FKPREHLS_					0	0	0		ENST00000399410.7_1_16:16236589-16236823:+|nuORF	ENST00000399410.7_1_16:16236589-16236823:+|nuORF	ENST00000399410.7_1_16:16236589-16236823:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	507.279983	1012.54541	1.8435	0.00093516	0.30999	0.00015725	2.1535	0.0010924	507.78247620380756	78.72	0.20508	78.72	78.625	78.83	0	-0.19291	-0.00023405	NaN	65.803	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104450			11318	11388	9308	9318							0.03964295882940405
FKPTPLKIN	9	Unmodified	_FKPTPLKIN_					0	0	0			REV__tr|A0A7D7A2W1|A0A7D7A2W1_9CLOTPhagetailtapemeasureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19185PE=4SV=1	REV__tr|A0A7D7A2W1|A0A7D7A2W1_9CLOTPhagetailtapemeasureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19185PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.7886962890625	2	529.32386	1056.63317	-0.25776	-0.00013644	-3.659	-0.0019368	-3.9167	-0.0020732	529.3219174542761	56.454	0.32074	56.454	56.261	56.581	0					12	7	2	0	0	0	0.027455	1	4696	4696		42.396	0	1	318950	+		11319	32555	9309	9319	12211	12211					0.10711496753719985
FKQLFVLRA	9	Unmodified	_FKQLFVLRA_					0	0	0			REV__ENST00000483074.1_1_13:53226892-53231674:+|nuORF	REV__ENST00000483074.1_1_13:53226892-53231674:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	561.3446655273438	2	561.345126	1120.6757	0.77019	0.00043234	-4.042	-0.0022689	-3.2718	-0.0018366	561.3427322997317	52.722	0.65041	52.722	52.522	53.172	0					35	14	4	0	0	0	0.31747	1	4154	4154		60.972	8.0352	1	1232000	+		11320	26517	9310	9320	12212	12212					0.12018891881939453
FKQRLIKNL	9	Unmodified	_FKQRLIKNL_					0	0	0			REV__RPS6KA1|p.D499N|1|0.1|ENSG00000117676|chr1:26561568-26561568|G/A|missense_variant	REV__RPS6KA1|p.D499N|1|0.1|ENSG00000117676|chr1:26561568-26561568|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.2700805664062	2	580.369133	1158.72371	1.6945	0.00098343	0.4716	0.0002737	2.1661	0.0012571	580.3693589427784	100.19	0.59004	100.19	99.939	100.53	0					24	13	3	0	0	0	0.027462	1	11069	11069		27.882	0	1	327750	+		11321	29339	9311	9321	12213	12213					0.1506996580201303
FKRAFSKLKGT	11	Unmodified	_FKRAFSKLKGT_					0	0	0			REV__nc|ENSG00000008838|O75448-2|MED24	REV__nc|ENSG00000008838|O75448-2|MED24	MULTI-MSMS	OvCa9_classI_Rep3	3	641.882568359375	2	641.885147	1281.75574	-5.3554	-0.0034376	1.3541	0.00086916	-4.0013	-0.0025684	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.63561	1	13116	13116		41.427	6.2746	1	804890	+		11322	16461	9312	9322	12214	12214					0.1261333348509197
FKRAQVKAVV	10	Unmodified	_FKRAQVKAVV_					0	0	0		ENST00000478072.2_1_9:104323064-104323554:+|nuORF	ENST00000478072.2_1_9:104323064-104323554:+|nuORF	ENST00000478072.2_1_9:104323064-104323554:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.8118896484375	2	573.361308	1144.70806	-0.47279	-0.00027108	0.017702	1.015E-05	-0.45509	-0.00026093	573.3610545464354	29.76	0.34887	29.76	29.586	29.935	0					13	6	3	0	0	0	0.027056	1	1098	1098		27.882	9.5578	1	41156			11323	12485	9313	9323	12215	12215					0.14149679284923877
FKRASKLK	8	Unmodified	_FKRASKLK_					0	0	0			REV__nc|ENSG00000150275|Q96QU1-2|PCDH15	REV__nc|ENSG00000150275|Q96QU1-2|PCDH15	MULTI-MSMS	OvCa9_classI_Rep2	2	489.3139953613281	2	489.316369	976.618185	-2.9034	-0.0014207	-1.3918	-0.00068104	-4.2952	-0.0021017	489.3155696010777	150.8	1.5265	150.57	150.17	151.7	-0.22696					77	30	4	0	0	0	0.75426	1	15288	15288		18.324	3.6603	1	380370	+		11324	26124	9314	9324	12216	12216					0.12894049676378927
FKRNRPPL	8	Unmodified	_FKRNRPPL_					0	0	0		nc|ENSG00000005961|P08514-2|ITGA2B;ENSG00000005961|ENST00000262407|ITGA2B	nc|ENSG00000005961|P08514-2|ITGA2B	nc|ENSG00000005961|P08514-2|ITGA2B	MULTI-MSMS	OvCa9_classI_Rep2	2	514.3111572265625	2	514.311618	1026.60868	-1.0854	-0.00055823	-0.79339	-0.00040805	-1.8788	-0.00096629	514.3111587898388	52.512	1.881	49.699	49.345	51.226	-2.8129					64	37	2	0	0	0	0.73288	1	3553	3553		35.201	3.2459	1	592000			11325	866	9315	9325	12217	12217					0.0964428139084248
FKRQRINPL	9	Unmodified	_FKRQRINPL_					0	0	0		nc|ENSG00000158941|Q8N163-2|CCAR2;ENSG00000158941|ENST00000308511|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	587.294921875	2	586.356557	1170.69856	-1.3883	-0.00081401	0.026182	1.5352E-05	-1.3621	-0.00079866	586.3566771939779	118.07	1.1573	116.73	116.31	117.47	-1.3444					31	21	2	0	0	0	0.027462	1	11123	11123		23.042	4.7804	1	43457			11326	5980	9316	9326	12218	12218					0.12003910999396794
FKRRYKNYERY	11	Unmodified	_FKRRYKNYERY_					0	0	0		tr|A0A7D6ZIK5|A0A7D6ZIK5_9CLOTPutativeAgrB-likeproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04735PE=3SV=1	tr|A0A7D6ZIK5|A0A7D6ZIK5_9CLOTPutativeAgrB-likeproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04735PE=3SV=1	tr|A0A7D6ZIK5|A0A7D6ZIK5_9CLOTPutativeAgrB-likeproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04735PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.77978515625	3	541.623191	1621.84774	2.0601	0.0011158	0.29796	0.00016138	2.3581	0.0012772	541.6231528412566	101.2	0.21359	101.2	101.02	101.23	0					5	4	2	0	0	0	0.026512	1	11236	11236		8.7993	3.1005	1	71556			11327	35618	9317	9327	12219	12219					0.061693918315086194
FKRSRLLKL	9	Unmodified	_FKRSRLLKL_					0	0	0		ENSG00000130758|ENST00000253055|MAP3K10;ENST00000594569.1_1_19:40711841-40712165:+|nuORF	ENSG00000130758|ENST00000253055|MAP3K10	ENSG00000130758|ENST00000253055|MAP3K10	MULTI-MSMS	OvCa99_classI_Rep5	1	580.8845825195312	2	580.88495	1159.75535	-0.71984	-0.00041815	0.3235	0.00018792	-0.39634	-0.00023023	580.8851145714783	41.199	0.9278	41.199	40.969	41.897	0					35	20	2	0	0	0	0.50149	1	2554	2554		42.396	1.8235	1	1413700			11328	4011	9318	9328	12220	12220					0.18185958555932302
FKRSYDYEIIG	11	Unmodified	_FKRSYDYEIIG_					0	0	0			REV__tr|A0A553SJ59|A0A553SJ59_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_16080PE=4SV=1	REV__tr|A0A553SJ59|A0A553SJ59_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_16080PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.2799377441406	3	464.238232	1389.69287	-1.0786	-0.00050072	2.2461	0.0010427	1.1675	0.00054198	464.2393668269941	81.702	0.39085	79.019	78.718	79.109	-2.6829					10	7	2	0	0	0	0.02595	1	6712	6712		26.75	8.2187	1	21290	+		11329	29968	9319	9329	12221	12221					0.01360722906429146
FKRYRELRCER	11	Unmodified	_FKRYRELRCER_					0	0	0			REV__ENSG00000120733|ENST00000314358|KDM3B	REV__ENSG00000120733|ENST00000314358|KDM3B	MULTI-MSMS	OvCa9_classI_Rep3	3	519.6133422851562	3	519.280659	1554.82015	0.80941	0.00042031	-3.4625	-0.001798	-2.6531	-0.0013777	519.2789130485361	70.208	2.0088	67.488	66.906	68.915	-2.7196					116	39	4	0	0	0	0.72524	1	3194	3194		12.433	1.8709	1	445180	+		11330	16251	9320	9330	12222	12222					0.06493165299616521
FKSAIIENV	9	Unmodified	_FKSAIIENV_					0	0	0		tr|A0A7D7A2Q6|A0A7D7A2Q6_9CLOTZ1domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09480PE=4SV=1	tr|A0A7D7A2Q6|A0A7D7A2Q6_9CLOTZ1domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09480PE=4SV=1	tr|A0A7D7A2Q6|A0A7D7A2Q6_9CLOTZ1domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09480PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	510.7897033691406	2	510.78985	1019.56515	-1.035	-0.00052868	0.90213	0.0004608	-0.13289	-6.7877E-05	510.790192219172	139.31	1.2779	139.08	138.81	140.09	-0.22696					65	25	4	0	0	0	0.51865	1	13955	13955		40.778	0	1	231800			11331	36088	9321	9331	12223	12223					0.05614627103057046
FKSKVTRYLCF	11	Unmodified	_FKSKVTRYLCF_					0	0	0		nc|ENSG00000196814|Q9H7P6-2|MVB12B;ENSG00000196814|ENST00000361171|MVB12B	nc|ENSG00000196814|Q9H7P6-2|MVB12B	nc|ENSG00000196814|Q9H7P6-2|MVB12B	MULTI-MSMS	OvCa99_classI_Rep5	1	464.5909118652344	3	464.588319	1390.74313	0.22491	0.00010449	1.4145	0.00065717	1.6394	0.00076166	464.5889458180039	57.482	0.84779	57.482	57.264	58.112	0					57	19	5	0	0	0	0.12642	1	4825	4825		91.469	26.192	1	3950000			11332	8651	9322	9332	12224	12224					0.06338554030594423
FKSLIPNQIT	10	Unmodified	_FKSLIPNQIT_					0	0	0			REV__tr|A0A7D7AFG1|A0A7D7AFG1_9CLOTLipidIIflippaseAmjOS=ClostridiumintestinaleOX=36845GN=amjPE=3SV=1	REV__tr|A0A7D7AFG1|A0A7D7AFG1_9CLOTLipidIIflippaseAmjOS=ClostridiumintestinaleOX=36845GN=amjPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	580.83837890625	2	580.837331	1159.66011	0.52161	0.00030297	2.2722	0.0013198	2.7939	0.0016228	580.8384501537045	91.799	4.0228	90.563	88.747	92.77	-1.2355					168	77	3	0	0	0	0.39172	1	8149	8149		69.628	4.1622	1	640260	+		11333	32714	9323	9333	12225	12225					0.0866656057421551
FKSNFLVDII	10	Unmodified	_FKSNFLVDII_					0	0	0			REV__tr|A0A7D6VQZ3|A0A7D6VQZ3_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00360PE=4SV=1	REV__tr|A0A7D6VQZ3|A0A7D6VQZ3_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00360PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	598.3445434570312	2	598.339707	1194.66486	1.8039	0.0010793	4.1397	0.002477	5.9436	0.0035563	598.3420292101987	85.912	1.5832	83.266	82.896	84.48	-2.6463					86	31	4	0	0	0	0.32141	1	7263	7263		78.264	26.928	1	808690	+		11334	31374	9324	9334	12226	12226					0.0753144471698306
FKSNFLVDII	10	Unmodified	_FKSNFLVDII_					0	0	0			REV__tr|A0A7D6VQZ3|A0A7D6VQZ3_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00360PE=4SV=1	REV__tr|A0A7D6VQZ3|A0A7D6VQZ3_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00360PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	598.339707	1194.66486	0.3164	0.00018932	5.4308	0.0032495	5.7472	0.0034388	598.3427924932151	85.467	2.0446	83.247	82.696	84.74	-2.2204	0.015974	-0.00024909	NaN	78.264	100	40	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	689530	+		11335	31374	9324	9334							0.0753144471698306
FKSRFKRIQYL	11	Unmodified	_FKSRFKRIQYL_					0	0	0		ENST00000462744.5_1_1:59762566-59797652:+|nuORF	ENST00000462744.5_1_1:59762566-59797652:+|nuORF	ENST00000462744.5_1_1:59762566-59797652:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	495.9590148925781	3	495.961144	1484.8616	-6.9468	-0.0034453	2.0579	0.0010207	-4.8888	-0.0024247	495.96210445138047	163.05	2.2058	161.66	160.17	162.38	-1.3926					163	48	5	0	0	0	0.72548	1	14135	14135		9.2118	2.5522	1	227040			11336	12209	9325	9335	12227	12227					0.13856669330607474
FKSSEMEV	8	Unmodified	_FKSSEMEV_					0	0	0		nc|ENSG00000204138|Q8IZ21-3|PHACTR4;ENSG00000204138|ENST00000373839|PHACTR4;nc|ENSG00000204138|Q8IZ21-2|PHACTR4;ENST00000493669.2_1_1:28816384-28823058:+|nuORF	nc|ENSG00000204138|Q8IZ21-3|PHACTR4	nc|ENSG00000204138|Q8IZ21-3|PHACTR4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.28582763671875	2	478.723318	955.432083	0.71219	0.00034094	1.6113	0.00077139	2.3235	0.0011123	478.72394222393376	89.984	0.54994	87.409	87.05	87.6	-2.575					13	10	2	0	0	0	0.028476	1	7746	7746		34.173	15.848	1	16695			11337	8951	9326	9336	12228	12228					-0.04741560345109974
FKTFYMVLL	9	Unmodified	_FKTFYMVLL_					0	0	0		ENSG00000023839|ENST00000647814|ABCC2	ENSG00000023839|ENST00000647814|ABCC2	ENSG00000023839|ENST00000647814|ABCC2	MULTI-MSMS	OvCa99_classI_Rep5	1	581.3267211914062	2	581.322471	1160.63039	2.4763	0.0014395	2.6463	0.0015384	5.1227	0.0029779	581.324247738894	99.135	0.72786	99.135	98.801	99.529	0					47	17	4	0	0	0	0.29717	1	10927	10927		63.306	1.1989	1	5697600			11338	1041	9327	9337	12229	12229					0.056499053045399705
FKTFYMVLL	9	Unmodified	_FKTFYMVLL_					0	0	0		ENSG00000023839|ENST00000647814|ABCC2	ENSG00000023839|ENST00000647814|ABCC2	ENSG00000023839|ENST00000647814|ABCC2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	581.322471	1160.63039	-1.2075	-0.00070194	3.7175	0.002161	2.51	0.0014591	581.3245100357494	100.15	1.4881	99.32	98.964	100.45	-0.83051	0.053459	-0.00064105	NaN	63.306	74	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	259120			11339	1041	9327	9337							0.056499053045399705
FKTGLFNIGVE	11	Unmodified	_FKTGLFNIGVE_					0	0	0		tr|A0A7D7A3I8|A0A7D7A3I8_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23070PE=4SV=1	tr|A0A7D7A3I8|A0A7D7A3I8_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23070PE=4SV=1	tr|A0A7D7A3I8|A0A7D7A3I8_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23070PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	612.8385009765625	2	612.834788	1223.65502	2.1294	0.001305	0.96048	0.00058861	3.0899	0.0018936	612.8352234706933	95.547	0.49796	95.547	95.328	95.826	0					30	11	3	0	0	0	0.68299	1	10429	10429		26.063	0	1	1029900			11340	36117	9328	9338	12230	12230					0.052142567116106875
FKVAFEFW	8	Unmodified	_FKVAFEFW_					0	0	0		ENST00000488127.1_1_1:25880414-25890333:+|nuORF;ENSG00000157978|ENST00000374338|LDLRAP1	ENST00000488127.1_1_1:25880414-25890333:+|nuORF	ENST00000488127.1_1_1:25880414-25890333:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.7877197265625	2	537.276378	1072.5382	0.41493	0.00022293	-0.014993	-8.0555E-06	0.39994	0.00021488	537.2754708646776	73.872	0.53228	73.872	73.792	74.324	0					20	13	2	0	0	0	0.028476	1	7333	7333		37.159	0	1	325120			11341	5922	9329	9339	12231	12231					0.004835632825233915
FKVEGAHG	8	Unmodified	_FKVEGAHG_					0	0	0			REV__ENST00000412427.1_1_1:17519509-17519952:+|nuORF	REV__ENST00000412427.1_1_1:17519509-17519952:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	422.7196044921875	2	422.719227	843.423902	-0.52806	-0.00022322	0.62045	0.00026228	0.092388	3.9054E-05	422.71937647953064	28.368	0.44803	28.368	28.19	28.638	0					17	8	3	0	0	0	0.67745	1	919	919		47.916	7.343	1	235920	+		11342	25496	9330	9340	12232	12232					-0.004073264795692921
FKVFRLSIAWS	11	Unmodified	_FKVFRLSIAWS_					0	0	0		tr|A0A7D7A2J6|A0A7D7A2J6_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20195PE=3SV=1;tr|A0A7D6VNI3|A0A7D6VNI3_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12735PE=3SV=1	tr|A0A7D7A2J6|A0A7D7A2J6_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20195PE=3SV=1;tr|A0A7D6VNI3|A0A7D6VNI3_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12735PE=3SV=1	tr|A0A7D7A2J6|A0A7D7A2J6_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20195PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	452.77777099609375	3	451.92744	1352.76049	0.76157	0.00034418	0.081109	3.6655E-05	0.84268	0.00038083	451.92753455508944	69.465	1.0968	66.651	65.964	67.06	-2.8144					30	21	2	0	0	0	0.025955	1	3099	3099		37.508	14.13	1	16434			11343	36081;34708	9331	9341	12233	12233					0.09822217627925056
FKVIKLVKV	9	Unmodified	_FKVIKLVKV_					0	0	0			REV__ZNF280B|p.N318I|1|0.07|ENSG00000275004|chr22:22488446-22488446|T/A|missense_variant	REV__ZNF280B|p.N318I|1|0.07|ENSG00000275004|chr22:22488446-22488446|T/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3223876953125	2	537.375895	1072.73724	2.1132	0.0011356	-0.64097	-0.00034444	1.4722	0.00079113	537.3754633662395	102.91	0.25182	102.91	102.76	103.01	0					6	5	2	0	0	0	0.027462	1	11494	11494		12.207	0	1	157660	+		11344	32773	9332	9342	12234	12234					0.2037782358122513
FKVSELIIY	9	Unmodified	_FKVSELIIY_					0	0	0		tr|A0A553SJX2|A0A553SJX2_NIACISporulationproteinOS=NialliacirculansOX=1397GN=CEQ21_17775PE=4SV=1	tr|A0A553SJX2|A0A553SJX2_NIACISporulationproteinOS=NialliacirculansOX=1397GN=CEQ21_17775PE=4SV=1	tr|A0A553SJX2|A0A553SJX2_NIACISporulationproteinOS=NialliacirculansOX=1397GN=CEQ21_17775PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	556.8242797851562	2	556.323525	1110.6325	-0.97737	-0.00054373	0.7636	0.00042481	-0.21377	-0.00011892	556.3237904713112	126.92	1.6681	125.48	125.15	126.81	-1.4357					83	32	4	0	0	0	0.33652	1	12082	12082		58.782	9.3404	1	275220			11345	33547	9333	9343	12235	12235					0.08160657314010678
FKWAFLLSL	9	Unmodified	_FKWAFLLSL_					0	0	0		nc|ENSG00000211584|Q6P1K1-2|SLC48A1;ENSG00000211584|ENST00000442218|SLC48A1	nc|ENSG00000211584|Q6P1K1-2|SLC48A1	nc|ENSG00000211584|Q6P1K1-2|SLC48A1	MULTI-MSMS	OvCa99_classI_Rep5	1	562.8273315429688	2	562.828778	1123.643	2.1312	0.0011995	-3.5861	-0.0020184	-1.4549	-0.00081887	562.8266269108739	92.405	1.5405	92.405	92.132	93.673	0					85	36	4	0	0	0	0.40667	1	10000	10000		51.335	1.8939	1	8821300			11346	9107	9334	9344	12236	12236					0.08612684759077638
FKWLSIDIIV	10	Unmodified	_FKWLSIDIIV_					0	0	0			REV__ENST00000553854.1_1_14:82127981-82128125:+|nuORF	REV__ENST00000553854.1_1_14:82127981-82128125:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	617.334228515625	2	617.365724	1232.7169	-0.66992	-0.00041358	-2.5999	-0.0016051	-3.2699	-0.0020187	617.3641563018232	59.77	0.46832	59.77	59.611	60.079	0					25	11	3	0	0	0	0.026694	1	5160	5160		34.173	0	1	481740	+		11347	27520	9335	9345	12237	12237					0.10984608130752349
FKYRENLNK	9	Unmodified	_FKYRENLNK_					0	0	0			REV__ENSG00000083290|ENST00000395544|ULK2	REV__ENSG00000083290|ENST00000395544|ULK2	MULTI-MSMS	OvCa99_classI_Rep5	1	404.557373046875	3	404.555895	1210.64586	0.51808	0.00020959	2.607	0.0010547	3.1251	0.0012643	404.556971685712	42.089	0.55898	42.089	41.853	42.412	0					24	12	2	0	0	0	0.31747	1	2669	2669		58.23	5.141	1	12154000	+		11348	17099	9336	9346	12238	12238					0.04895908145931571
FKYTPPFLL	9	Unmodified	_FKYTPPFLL_					0	0	0			REV__nc|ENSG00000132376|Q9BT40-2|INPP5K	REV__nc|ENSG00000132376|Q9BT40-2|INPP5K	MULTI-MSMS	OvCa99_classI_Rep5	1	563.3206787109375	2	563.320786	1124.62702	2.0745	0.0011686	-3.5482	-0.0019987	-1.4736	-0.00083013	563.3185654524993	127.03	0.71037	127.03	126.61	127.32	0					43	15	4	0	0	0	0.11171	2	14682	14682;14695		94.006	2.3948	1	554620	+		11349	19072	9337	9347	12239;12240	12239					0.0696897852217262
FLAALAGWL	9	Unmodified	_FLAALAGWL_					0	0	0			REV__ENSG00000238227|ENST00000418388|TMEM250	REV__ENSG00000238227|ENST00000418388|TMEM250	MULTI-MSMS	OvCa9_classI_Rep2	2	481.2765197753906	2	481.278921	960.543289	0.19197	9.239E-05	-4.4103	-0.0021226	-4.2183	-0.0020302	481.27646864528947	82.286	1.2382	80.637	80.127	81.365	-1.6485					49	23	3	0	0	0	0.22187	2	7008	7008;7020		72.62	7.1545	1	616830	+		11350	23427	9338	9348	12241;12242	12241					0.06143867145146942
FLAALAGWL	9	Unmodified	_FLAALAGWL_					0	0	0			REV__ENSG00000238227|ENST00000418388|TMEM250	REV__ENSG00000238227|ENST00000418388|TMEM250	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.2774353027344	2	481.278921	960.543289	-0.22958	-0.00011049	-3.8172	-0.0018371	-4.0468	-0.0019476	481.2767165547781	83.249	1.1214	80.586	80.29	81.412	-2.6629					52	22	3	0	0	0	0.32242	1	6909	6909		60.404	5.639	1	953480	+		11351	23427	9338	9348	12243	12243					0.06143867145146942
FLAALALYLL	10	Unmodified	_FLAALALYLL_					0	0	0		ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	MULTI-MSMS	OvCa99_classI_Rep5	1	554.3483276367188	2	554.344261	1106.67397	1.9613	0.0010872	1.2436	0.00068939	3.2049	0.0017766	554.3445600732562	134.41	1.7792	134.41	133.86	135.64	0					101	38	5	0	0	0	0.49566	1	15623	15623		54.765	1.4132	1	1289500			11352	2784	9339	9349	12244	12244					0.12489838073315696
FLAARAFL	8	Unmodified	_FLAARAFL_					0	0	0		ENSG00000188779|ENST00000380035|SKOR1	ENSG00000188779|ENST00000380035|SKOR1	ENSG00000188779|ENST00000380035|SKOR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	454.25311279296875	2	454.771263	907.527973	-0.50095	-0.00022782	-3.6805	-0.0016738	-4.1815	-0.0019016	454.7692182802119	43.457	0.51017	43.457	43.27	43.78	0					18	11	2	0	0	0	0.028476	1	2890	2890		39.021	18.54	1	147300			11353	8500	9340	9350	12245	12245					0.07051000347928493
FLAAVATSI	9	Unmodified	_FLAAVATSI_					0	0	0		tr|A0A553SFC4|A0A553SFC4_NIACIProbableheme-irontransportsystempermeaseproteinIsdFOS=NialliacirculansOX=1397GN=CEQ21_08625PE=3SV=1	tr|A0A553SFC4|A0A553SFC4_NIACIProbableheme-irontransportsystempermeaseproteinIsdFOS=NialliacirculansOX=1397GN=CEQ21_08625PE=3SV=1	tr|A0A553SFC4|A0A553SFC4_NIACIProbableheme-irontransportsystempermeaseproteinIsdFOS=NialliacirculansOX=1397GN=CEQ21_08625PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	447.23089599609375	2	446.760561	891.506569	4.2611	0.0019037	-1.5267	-0.00068206	2.7344	0.0012216	446.75971610327514	88.404	0.6312	88.404	88.212	88.843	0					23	14	2	0	0	0	0.027456	1	9420	9420		47.916	1.9636	1	584450			11354	33024	9341	9351	12246	12246					0.05647570528560664
FLADIVQKL	9	Unmodified	_FLADIVQKL_					0	0	0		SACS|p.V3288Tfs*46|1|0.07|ENSG00000151835|chr13:23334014-23334015|-/TGAAGGGATACTTTTTGTAAGTACGT|frameshift_variant;ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.L2402Tfs*7|1|0.04|ENSG00000151835|chr13:23336672-23336673|-/T|frameshift_variant	SACS|p.V3288Tfs*46|1|0.07|ENSG00000151835|chr13:23334014-23334015|-/TGAAGGGATACTTTTTGTAAGTACGT|frameshift_variant	SACS|p.V3288Tfs*46|1|0.07|ENSG00000151835|chr13:23334014-23334015|-/TGAAGGGATACTTTTTGTAAGTACGT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	523.8168334960938	2	523.815867	1045.61718	1.7698	0.00092703	0.36185	0.00018954	2.1316	0.0011166	523.8158455511242	122.01	0.92239	122.01	121.75	122.68	0					44	19	4	0	0	0	0.055627	2	14047	14047;14073		115.49	23.303	1	1102300			11355	5587	9342	9352	12247;12248	12247					0.0961979051680828
FLAEDALNTV	10	Unmodified	_FLAEDALNTV_					0	0	0		ENST00000484556.1_1_6:30866836-30867070:+|nuORF;nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1	ENST00000484556.1_1_6:30866836-30867070:+|nuORF	ENST00000484556.1_1_6:30866836-30867070:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	546.7835083007812	2	546.782222	1091.54989	1.7328	0.00094749	0.98531	0.00053875	2.7182	0.0014862	546.7827986840668	122.52	0.63942	122.52	122.27	122.91	0					35	13	4	0	0	0	0.0039042	1	14113	14113		167.23	65.628	1	637730			11356	9005	9343	9353	12249	12249					0.007777155151643456
FLAEDALNTV	10	Unmodified	_FLAEDALNTV_					0	0	0		ENST00000484556.1_1_6:30866836-30867070:+|nuORF;nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1	ENST00000484556.1_1_6:30866836-30867070:+|nuORF	ENST00000484556.1_1_6:30866836-30867070:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	546.7822875976562	2	546.782222	1091.54989	-0.38383	-0.00020987	0.25892	0.00014157	-0.12491	-6.8297E-05	546.7822736350716	121.95	3.3566	121.74	121.33	124.69	-0.21033					164	67	4	0	0	0	2.8494E-05	14	11823	11777;11781;11787;11793;11799;11805;11811;11817;11823;11829;11835;11841;11847;11866		185.72	81.662	1	467550			11357	9005	9343	9353	12250;12251;12252;12253;12254;12255;12256;12257;12258;12259;12260;12261;12262;12263	12258					0.007777155151643456
FLAEDALNTV	10	Unmodified	_FLAEDALNTV_					0	0	0		ENST00000484556.1_1_6:30866836-30867070:+|nuORF;nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1	ENST00000484556.1_1_6:30866836-30867070:+|nuORF	ENST00000484556.1_1_6:30866836-30867070:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	546.7811279296875	2	546.782222	1091.54989	0.91424	0.00049989	-1.101	-0.00060203	-0.1868	-0.00010214	546.7815061876081	122.53	2.6531	121.5	121.16	123.82	-1.0286					135	50	4	0	0	0	6.224E-08	12	9425	9410;9414;9419;9425;9431;9437;9444;9450;9457;9463;9488;9530		229.33	82.174	1	638140			11358	9005	9343	9353	12264;12265;12266;12267;12268;12269;12270;12271;12272;12273;12274;12275	12267					0.007777155151643456
FLAEDALNTV	10	Unmodified	_FLAEDALNTV_					0	0	0		ENST00000484556.1_1_6:30866836-30867070:+|nuORF;nc|ENSG00000204580|Q08345-2|DDR1;nc|ENSG00000204580|Q08345-6|DDR1;ENSG00000204580|ENST00000376568|DDR1;nc|ENSG00000204580|Q08345-5|DDR1	ENST00000484556.1_1_6:30866836-30867070:+|nuORF	ENST00000484556.1_1_6:30866836-30867070:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.7809448242188	2	546.782222	1091.54989	-0.13219	-7.228E-05	-0.28342	-0.00015497	-0.41561	-0.00022725	546.7820089469107	122.89	3.2778	121.53	121.16	124.44	-1.3666					149	64	4	0	0	0	2.6163E-07	8	11604	11595;11604;11616;11628;11640;11653;11666;11676		214.23	86.769	1	613140			11359	9005	9343	9353	12276;12277;12278;12279;12280;12281;12282;12283	12277					0.007777155151643456
FLAEDVGWEN	10	Unmodified	_FLAEDVGWEN_					0	0	0			REV__tr|A0A7D6VVK6|A0A7D6VVK6_9CLOTSialateO-acetylesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_11585PE=4SV=1	REV__tr|A0A7D6VVK6|A0A7D6VVK6_9CLOTSialateO-acetylesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_11585PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	590.267822265625	2	590.269478	1178.5244	-5.3391	-0.0031515	4.025	0.0023758	-1.3141	-0.00077569	590.2717322598501	159.2	1.2398	158.97	158.63	159.87	-0.22697					77	24	4	0	0	0	0.70152	1	16204	16204		30.318	1.1682	1	170140	+		11360	31721	9344	9354	12284	12284					-0.05771759007234323
FLAGLVPDPL	10	Unmodified	_FLAGLVPDPL_					0	0	0			REV__nc|ENSG00000089057|Q9UGH3-2|SLC23A2	REV__nc|ENSG00000089057|Q9UGH3-2|SLC23A2	MSMS	OvCa99_classI_Rep5	1	521.3036499023438	2	521.302593	1040.59063	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.11	1	106.11	105.61	106.61	0								0	0	0	0.13325	1	11936	11936		55.504	4.1688	1		+		11361	17197	9345	9355	12285	12285					0.07196101625481788
FLAGMMVHKS	10	Unmodified	_FLAGMMVHKS_					0	0	0			REV__ENST00000371627.4_1_10:93572781-93572859:+|nuORF	REV__ENST00000371627.4_1_10:93572781-93572859:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	560.8035888671875	2	560.78573	1119.55691	0.54676	0.00030662	-1.0603	-0.00059462	-0.51357	-0.000288	560.7848818657868	96.092	0.94457	95.064	94.664	95.609	-1.0281					26	18	2	0	0	0	0.026734	1	8718	8718		47.657	1.6851	1	21412	+		11362	24986	9346	9356	12286	12286					0.001910335904085514
FLAKEHQEPG	10	Unmodified	_FLAKEHQEPG_					0	0	0		BACH2|p.T559K|1|0.06|ENSG00000112182|chr6:89950430-89950430|G/T|missense_variant	BACH2|p.T559K|1|0.06|ENSG00000112182|chr6:89950430-89950430|G/T|missense_variant	BACH2|p.T559K|1|0.06|ENSG00000112182|chr6:89950430-89950430|G/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	578.2888793945312	2	578.293288	1154.57202	-5.4888	-0.0031741	-0.73844	-0.00042704	-6.2272	-0.0036012	578.2927598597663	159.22	4.1126	158.99	158.53	162.64	-0.22697					262	82	5	0	0	0	0.46756	1	16172	16172		58.782	2.0609	1	1073400			11363	141	9347	9357	12287	12287					0.0009193998362206912
FLAKEHQEPG	10	Unmodified	_FLAKEHQEPG_					0	0	0		BACH2|p.T559K|1|0.06|ENSG00000112182|chr6:89950430-89950430|G/T|missense_variant	BACH2|p.T559K|1|0.06|ENSG00000112182|chr6:89950430-89950430|G/T|missense_variant	BACH2|p.T559K|1|0.06|ENSG00000112182|chr6:89950430-89950430|G/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	578.289306640625	2	578.293288	1154.57202	-7.6021	-0.0043963	1.2846	0.00074285	-6.3176	-0.0036534	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.35465	1	13977	13977		74.255	7.8258	1	1429200			11364	141	9347	9357	12288	12288					0.0009193998362206912
FLAKIAQPK	9	Unmodified	_FLAKIAQPK_					0	0	0		KCNJ10|p.R171Q|1|0.23|ENSG00000177807|chr1:160042021-160042021|C/T|missense_variant	KCNJ10|p.R171Q|1|0.23|ENSG00000177807|chr1:160042021-160042021|C/T|missense_variant	KCNJ10|p.R171Q|1|0.23|ENSG00000177807|chr1:160042021-160042021|C/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.2882995605469	2	508.318577	1014.6226	2.0963	0.0010656	1.1981	0.000609	3.2944	0.0016746	508.3190956972226	99.9	0.79095	99.9	99.612	100.4	0					31	18	3	0	0	0	0.027462	1	11034	11034		29.15	0	1	455280			11365	14517	9348	9358	12289	12289					0.11587514099278451
FLAKIAQPK	9	Unmodified	_FLAKIAQPK_					0	0	0		KCNJ10|p.R171Q|1|0.23|ENSG00000177807|chr1:160042021-160042021|C/T|missense_variant	KCNJ10|p.R171Q|1|0.23|ENSG00000177807|chr1:160042021-160042021|C/T|missense_variant	KCNJ10|p.R171Q|1|0.23|ENSG00000177807|chr1:160042021-160042021|C/T|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	508.318577	1014.6226	-1.2436	-0.00063214	-0.28729	-0.00014604	-1.5309	-0.00077818	508.82228385343905	100.74	0.84395	99.936	99.54	100.38	-0.79948	0.017908	-0.0012157	NaN	35.618	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7926.3			11366	14517	9348	9358							0.11587514099278451
FLALHRKL	8	Unmodified	_FLALHRKL_					0	0	0			REV__ENSG00000186867|ENST00000394427|QRFPR	REV__ENSG00000186867|ENST00000394427|QRFPR	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.3077392578125	2	499.318912	996.62327	0.47498	0.00023717	-1.4404	-0.00071922	-0.96542	-0.00048205	499.31803108412817	160.7	0.45338	160.7	160.45	160.91	0					18	8	3	0	0	0	0.028476	1	18854	18854		44.531	20.328	1	84839	+		11367	22616	9349	9359	12290	12290					0.1248235353898508
FLALLAGAHA	10	Unmodified	_FLALLAGAHA_					0	0	0		nc|ENSG00000100979|P55058-3|PLTP;nc|ENSG00000100979|P55058-2|PLTP;ENSG00000100979|ENST00000372431|PLTP	nc|ENSG00000100979|P55058-3|PLTP	nc|ENSG00000100979|P55058-3|PLTP	MULTI-MSMS	OvCa99_classI_Rep5	1	492.2889404296875	2	492.287277	982.560001	1.7226	0.00084801	0.18484	9.0994E-05	1.9074	0.00093901	492.2872510683021	110.28	3.2897	110.28	109.73	113.02	0					174	72	4	0	0	0	0.0014949	7	12508	12484;12508;12533;12557;12590;12625;12656		174.26	78.222	1	6785800			11368	2127	9350	9360	12291;12292;12293;12294;12295;12296;12297	12292					0.06802368031083006
FLALLAGAHA	10	Unmodified	_FLALLAGAHA_					0	0	0		nc|ENSG00000100979|P55058-3|PLTP;nc|ENSG00000100979|P55058-2|PLTP;ENSG00000100979|ENST00000372431|PLTP	nc|ENSG00000100979|P55058-3|PLTP	nc|ENSG00000100979|P55058-3|PLTP	MULTI-MSMS	OvCa9_classI_Rep2	2	492.2872009277344	2	492.287277	982.560001	1.036	0.00051	-1.2272	-0.00060416	-0.19126	-9.4155E-05	492.2865610342496	111.64	2.0208	111.5	111.13	113.15	-0.13961					79	40	2	0	0	0	0.07452	4	10585	10549;10559;10571;10585		120.06	24.017	1	226130			11369	2127	9350	9360	12298;12299;12300;12301	12301					0.06802368031083006
FLALLAGAHA	10	Unmodified	_FLALLAGAHA_					0	0	0		nc|ENSG00000100979|P55058-3|PLTP;nc|ENSG00000100979|P55058-2|PLTP;ENSG00000100979|ENST00000372431|PLTP	nc|ENSG00000100979|P55058-3|PLTP	nc|ENSG00000100979|P55058-3|PLTP	MULTI-MSMS	OvCa9_classI_Rep3	3	492.29241943359375	2	492.287277	982.560001	1.142	0.00056221	-1.4	-0.00068921	-0.25798	-0.000127	492.28649069738043	112.55	3.1021	111.47	111.07	114.17	-1.0753					104	61	2	0	0	0	0.07452	1	8234	8234		120.06	24.017	1	229220			11370	2127	9350	9360	12302	12302					0.06802368031083006
FLALLAGAHA	10	Unmodified	_FLALLAGAHA_					0	0	0		nc|ENSG00000100979|P55058-3|PLTP;nc|ENSG00000100979|P55058-2|PLTP;ENSG00000100979|ENST00000372431|PLTP	nc|ENSG00000100979|P55058-3|PLTP	nc|ENSG00000100979|P55058-3|PLTP	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.29449462890625	2	492.287277	982.560001	0.67935	0.00033444	-1.0249	-0.00050455	-0.34556	-0.00017011	492.28665915855544	113.01	3.2553	111.57	111.01	114.27	-1.4461					115	64	2	0	0	0	0.07452	5	10450	10450;10469;10480;10500;10518		120.06	40.345	1	269110			11371	2127	9350	9360	12303;12304;12305;12306;12307	12303					0.06802368031083006
FLALLFML	8	Oxidation (M)	_FLALLFM(Oxidation (M))L_		FLALLFM(1)L		FLALLFM(96)L	0	0	1		tr|A0A553SRE8|A0A553SRE8_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_00935PE=4SV=1	tr|A0A553SRE8|A0A553SRE8_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_00935PE=4SV=1	tr|A0A553SRE8|A0A553SRE8_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_00935PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	492.28863525390625	2	492.285357	982.556161	1.142	0.00056221	2.5	0.0012307	3.642	0.0017929	492.28649069738043	112.55	3.1021	111.47	111.07	114.17	-1.0753					104	61	2	0	0	0	0.35898	1	8263	8263		96.041	15.044	1	229220			11372	34255	9351	9361	12308	12308		756			0.06418562213025325
FLALLMDVL	9	Unmodified	_FLALLMDVL_					0	0	0			REV__tr|A0A553SSL5|A0A553SSL5_NIACIABC-2typetransportsystempermeaseproteinOS=NialliacirculansOX=1397GN=CEQ21_03335PE=4SV=1	REV__tr|A0A553SSL5|A0A553SSL5_NIACIABC-2typetransportsystempermeaseproteinOS=NialliacirculansOX=1397GN=CEQ21_03335PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.325439453125	2	517.801371	1033.58819	0.74632	0.00038645	4.1797	0.0021643	4.926	0.0025507	517.803353719838	84.726	0.67254	82.063	81.822	82.494	-2.6629					20	13	2	0	0	0	0.027417	1	7071	7071		65.803	7.9919	1	56592	+		11373	30847	9352	9362	12309	12309					0.07273929896155096
FLALLMDVL	9	Unmodified	_FLALLMDVL_					0	0	0			REV__tr|A0A553SSL5|A0A553SSL5_NIACIABC-2typetransportsystempermeaseproteinOS=NialliacirculansOX=1397GN=CEQ21_03335PE=4SV=1	REV__tr|A0A553SSL5|A0A553SSL5_NIACIABC-2typetransportsystempermeaseproteinOS=NialliacirculansOX=1397GN=CEQ21_03335PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	517.801371	1033.58819	-0.14369	-7.4401E-05	5.5567	0.0028773	5.413	0.0028029	517.8042103312866	83.475	0.88074	81.876	81.55	82.43	-1.5988	-0.14093	0.00061671	NaN	65.803	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32543	+		11374	30847	9352	9362							0.07273929896155096
FLAMPFNSL	9	Unmodified	_FLAMPFNSL_					0	0	0		ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.31201171875	2	520.267696	1038.52084	1.0034	0.00052203	-3.5754	-0.0018601	-2.572	-0.0013381	520.2656733558687	85.801	1.1305	83.155	82.263	83.394	-2.6463					34	22	3	0	0	0	0.027433	1	7249	7249		38.806	3.1879	1	371750			11375	7717	9353	9363	12310	12310					0.003118996852208511
FLAPARAIL	9	Unmodified	_FLAPARAIL_					0	0	0		ENSG00000089057|ENST00000338244|SLC23A2;ENST00000496331.1_1_20:4854564-4866632:-|nuORF;ENST00000468355.5_1_20:4850526-4913271:-|nuORF	ENSG00000089057|ENST00000338244|SLC23A2	ENSG00000089057|ENST00000338244|SLC23A2	MULTI-MSMS	OvCa9_classI_Rep2	2	486.3052062988281	2	486.30547	970.596387	0.60247	0.00029298	-1.3637	-0.00066315	-0.76119	-0.00037017	486.3047947264386	124.97	2.7662	124.74	124.37	127.13	-0.2359					156	55	5	0	0	0	0.59983	1	12264	12264		31.955	1.4512	1	3410600			11376	1807	9354	9364	12311	12311					0.10991244927799926
FLAPARAIL	9	Unmodified	_FLAPARAIL_					0	0	0		ENSG00000089057|ENST00000338244|SLC23A2;ENST00000496331.1_1_20:4854564-4866632:-|nuORF;ENST00000468355.5_1_20:4850526-4913271:-|nuORF	ENSG00000089057|ENST00000338244|SLC23A2	ENSG00000089057|ENST00000338244|SLC23A2	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.3043518066406	2	486.30547	970.596387	-1.8727	-0.00091069	1.17	0.00056898	-0.70267	-0.00034171	486.3060163931478	126.56	4.5912	125.14	124.48	129.07	-1.4143					192	91	5	0	0	0	0.52083	1	12124	12124		40.573	5.3719	1	3302400			11377	1807	9354	9364	12312	12312					0.10991244927799926
FLAPSLLITK	10	Unmodified	_FLAPSLLITK_					0	0	0		ENST00000312210.9_1_1:150979123-150979306:-|nuORF	ENST00000312210.9_1_1:150979123-150979306:-|nuORF	ENST00000312210.9_1_1:150979123-150979306:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.7808227539062	2	551.847167	1101.67978	-0.69486	-0.00038345	-2.1711	-0.0011981	-2.8659	-0.0015816	551.8461405044392	36.134	0.41201	36.134	35.939	36.351	0					19	8	3	0	0	0	0.027021	1	1898	1898		37.159	5.6293	1	97044			11378	10305	9355	9365	12313	12313					0.13300936584982992
FLAPVPAVPE	10	Unmodified	_FLAPVPAVPE_					0	0	0		ENST00000531925.5_1_19:1789538-1806275:-|nuORF	ENST00000531925.5_1_19:1789538-1806275:-|nuORF	ENST00000531925.5_1_19:1789538-1806275:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.8516845703125	2	520.294768	1038.57498	2.8343	0.0014747	-4.3817	-0.0022798	-1.5474	-0.0008051	520.2923361696137	88.546	0.87415	88.546	88.13	89.004	0					62	20	4	0	0	0	0.026697	1	9431	9431		45.952	1.5748	1	2565300			11379	13317	9356	9366	12314	12314					0.057238151084447964
FLASPEVFHL	10	Unmodified	_FLASPEVFHL_					0	0	0		ENST00000394507.5_2_7:91874335-91874458:-|nuORF	ENST00000394507.5_2_7:91874335-91874458:-|nuORF	ENST00000394507.5_2_7:91874335-91874458:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	580.8133544921875	2	580.310949	1158.60735	-1.6812	-0.0009756	3.041	0.0017647	1.3599	0.00078914	580.8137028999474	43.931	0.61045	43.931	43.694	44.305	0					29	13	4	0	0	0	0.55145	1	2933	2933		47.916	0.25827	1	1205600			11380	11267	9357	9367	12315	12315					0.03438602511437239
FLATVYNEF	9	Unmodified	_FLATVYNEF_					0	0	0			REV__tr|A0A7D6VNI3|A0A7D6VNI3_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12735PE=3SV=1	REV__tr|A0A7D6VNI3|A0A7D6VNI3_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12735PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	552.2750854492188	2	552.274032	1102.53351	1.4807	0.00081773	0.20738	0.00011453	1.688	0.00093226	552.2740926708751	148.69	1.0355	148.69	148.32	149.36	0					50	20	3	0	0	0	0.50149	1	17419	17419		42.396	4.5846	1	323490	+		11381	31183	9358	9368	12316	12316					-0.013653656509177381
FLAVNRVI	8	Unmodified	_FLAVNRVI_					0	0	0		nc|ENSG00000133895|O00255-3|MEN1;ENSG00000133895|ENST00000450708|MEN1;nc|ENSG00000133895|O00255-1|MEN1	nc|ENSG00000133895|O00255-3|MEN1	nc|ENSG00000133895|O00255-3|MEN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.28839111328125	2	466.28982	930.565087	-0.23749	-0.00011074	0.092813	4.3278E-05	-0.14468	-6.7463E-05	466.2897232472392	121.61	1.2284	120.26	119.9	121.13	-1.3479					54	23	3	0	0	0	0.73288	1	11447	11447		35.201	4.6971	1	95950			11382	4242	9359	9369	12317	12317					0.09702671893705883
FLAVPVIKKN	10	Unmodified	_FLAVPVIKKN_					0	0	0		ENSG00000154237|ENST00000388948|LRRK1;ENST00000525284.5_1_15:101602697-101609050:+|nuORF	ENSG00000154237|ENST00000388948|LRRK1	ENSG00000154237|ENST00000388948|LRRK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.83642578125	2	564.860609	1127.70667	0.92664	0.00052342	2.3351	0.001319	3.2617	0.0018424	564.8611729062075	141.11	0.65546	141.11	140.83	141.49	0					22	12	3	0	0	0	0.026639	1	16475	16475		35.618	0	1	66688			11383	5721	9360	9370	12318	12318					0.14792045196190884
FLCCWELK	8	Unmodified	_FLCCWELK_					0	0	0		nc|ENSG00000151718|Q6AWC2-6|WWC2;ENST00000515284.1_1_4:184192391-184202123:+|nuORF	nc|ENSG00000151718|Q6AWC2-6|WWC2	nc|ENSG00000151718|Q6AWC2-6|WWC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.283447265625	2	521.248449	1040.48234	-1.0823	-0.00056416	-0.19277	-0.00010048	-1.2751	-0.00066464	521.248446425411	70.883	0.42555	67.426	67.155	67.58	-3.4563					11	8	2	0	0	0	0.028476	1	5365	5365		38.806	5.9937	1	16160			11384	15094	9361	9371	12319	12319					-0.0362772922098884
FLCDFLYQAP	10	Unmodified	_FLCDFLYQAP_					0	0	0		ENSG00000047365|ENST00000303965|ARAP2	ENSG00000047365|ENST00000303965|ARAP2	ENSG00000047365|ENST00000303965|ARAP2	MULTI-MSMS	OvCa9_classI_Rep3	3	608.7903442382812	2	608.788992	1215.56343	0.77672	0.00047286	1.4682	0.00089381	2.2449	0.0013667	608.7896927819082	135.16	1.3782	134.05	133.72	135.1	-1.1076					76	27	4	0	0	0	0.69986	1	10908	10908		30.504	1.3336	1	189180			11385	1143	9362	9372	12320	12320					-0.035727499772292504
FLCEWGQGAF	10	Unmodified	_FLCEWGQGAF_					0	0	0			REV__ENST00000367660.3_1_6:139364265-139364322:+|nuORF	REV__ENST00000367660.3_1_6:139364265-139364322:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	579.2573852539062	2	579.257859	1156.50117	1.8987	0.0010998	0.57221	0.00033146	2.4709	0.0014313	579.258067195862	108.27	1.2961	108.27	107.94	109.24	0					50	29	3	0	0	0	0.55359	1	12259	12259		47.657	5.1829	1	809730	+		11386	24905	9363	9373	12321	12321					-0.07082476325535936
FLCLFSALPR	10	Unmodified	_FLCLFSALPR_					0	0	0		ENST00000372945.7_1_10:75012294-75012351:-|nuORF	ENST00000372945.7_1_10:75012294-75012351:-|nuORF	ENST00000372945.7_1_10:75012294-75012351:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	583.8258666992188	2	583.823169	1165.63179	-2.806	-0.0016382	4.2473	0.0024797	1.4413	0.00084146	583.8256020803484	108.26	1.2557	106.54	106.27	107.52	-1.7256					73	24	4	0	0	0	0.49049	1	9936	9936		55.504	12.64	1	542120			11387	10992	9364	9374	12322	12322					0.05559539393289015
FLCLVKPYL	9	Unmodified	_FLCLVKPYL_					0	0	0		tr|A0A7D7A211|A0A7D7A211_9CLOTBacteriophageabortiveinfectionAbiHfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06510PE=4SV=1	tr|A0A7D7A211|A0A7D7A211_9CLOTBacteriophageabortiveinfectionAbiHfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06510PE=4SV=1	tr|A0A7D7A211|A0A7D7A211_9CLOTBacteriophageabortiveinfectionAbiHfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06510PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	548.3213500976562	2	548.317189	1094.61982	1.0824	0.00059348	3.91	0.0021439	4.9924	0.0027374	548.3190920868713	79.136	0.56023	79.136	78.791	79.352	0					26	13	3	0	0	0	0.44294	1	8048	8048		47.916	3.3845	1	2867400			11388	36057	9365	9375	12323	12323					0.07629922650085064
FLCQRCHQAL	10	Unmodified	_FLCQRCHQAL_					0	0	0		ENSG00000196289|ENST00000419583|BECN2	ENSG00000196289|ENST00000419583|BECN2	ENSG00000196289|ENST00000419583|BECN2	MULTI-MSMS	OvCa99_classI_Rep5	1	609.80078125	2	609.79716	1217.57977	2.0917	0.0012755	2.1398	0.0013048	4.2315	0.0025804	609.7983905748293	110.27	1.7883	110.27	109.64	111.42	0					99	39	4	0	0	0	0.56767	1	12540	12540		45.952	1.8352	1	6841300			11389	8586	9366	9376	12324	12324					-0.02031947292107361
FLDAGTWSTWS	11	Unmodified	_FLDAGTWSTWS_					0	0	0		nc|ENSG00000137070|Q14626-2|IL11RA;ENSG00000137070|ENST00000441545|IL11RA	nc|ENSG00000137070|Q14626-2|IL11RA	nc|ENSG00000137070|Q14626-2|IL11RA	MULTI-MSMS	OvCa99_classI_Rep5	1	635.791259765625	2	635.790578	1269.5666	0.74296	0.00047237	-1.7909	-0.0011386	-1.0479	-0.00066627	635.7890592875154	105.48	1.6626	105.48	104.83	106.49	0					83	37	3	0	0	0	0.46066	1	11867	11867		56.721	0	1	4190100			11390	4550	9367	9377	12325	12325					-0.05739783598869508
FLDDVVHSL	9	Unmodified	_FLDDVVHSL_					0	0	0		JMJD1C|p.G987Efs*15|1|0.12|ENSG00000171988|chr10:63208709-63208709|C/-|frameshift_variant;ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C	JMJD1C|p.G987Efs*15|1|0.12|ENSG00000171988|chr10:63208709-63208709|C/-|frameshift_variant	JMJD1C|p.G987Efs*15|1|0.12|ENSG00000171988|chr10:63208709-63208709|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	522.7731323242188	2	522.771657	1043.52876	1.6155	0.00084454	1.2936	0.00067624	2.9091	0.0015208	522.7721374907741	118.04	1.5426	118.04	117.79	119.33	0					74	32	4	0	0	0	0.010619	2	13549	13524;13549		166.78	72.776	1	1804200			11391	7256	9368	9378	12326;12327	12327					0.008737502063468128
FLDDVVHSL	9	Unmodified	_FLDDVVHSL_					0	0	0		JMJD1C|p.G987Efs*15|1|0.12|ENSG00000171988|chr10:63208709-63208709|C/-|frameshift_variant;ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C	JMJD1C|p.G987Efs*15|1|0.12|ENSG00000171988|chr10:63208709-63208709|C/-|frameshift_variant	JMJD1C|p.G987Efs*15|1|0.12|ENSG00000171988|chr10:63208709-63208709|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.8114013671875	2	522.771657	1043.52876	-1.2748	-0.00066643	1.3686	0.00071547	0.093814	4.9043E-05	522.7722623568005	118.95	1.4332	118.8	118.43	119.87	-0.14755					54	28	3	0	0	0	0.027433	1	11431	11431		71.296	30.723	1	65687			11392	7256	9368	9378	12328	12328					0.008737502063468128
FLDENKFSR	9	Unmodified	_FLDENKFSR_					0	0	0			REV__ENSG00000163217|ENST00000295379|BMP10	REV__ENSG00000163217|ENST00000295379|BMP10	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2896728515625	2	578.293288	1154.57202	-7.6021	-0.0043963	1.2846	0.00074285	-6.3176	-0.0036534	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.55588	1	14134	14134		37.159	1.5408	1	1429200	+		11393	20817	9369	9379	12329	12329					0.0009193998362206912
FLDENVHFF	9	Unmodified	_FLDENVHFF_					0	0	0		nc|ENSG00000142002|Q86TI2-4|DPP9;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9	nc|ENSG00000142002|Q86TI2-4|DPP9	nc|ENSG00000142002|Q86TI2-4|DPP9	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.8151245117188	2	584.277106	1166.53966	0.67858	0.00039648	1.3116	0.00076631	1.9901	0.0011628	584.2776332899485	123.95	1.1919	123.95	123.69	124.89	0					48	25	3	0	0	0	0.027198	1	14312	14312		95.815	39.381	1	442890			11394	4952	9370	9380	12330	12330					-0.0369484741938777
FLDENVHFF	9	Unmodified	_FLDENVHFF_					0	0	0		nc|ENSG00000142002|Q86TI2-4|DPP9;nc|ENSG00000142002|Q86TI2|DPP9;ENSG00000142002|ENST00000262960|DPP9	nc|ENSG00000142002|Q86TI2-4|DPP9	nc|ENSG00000142002|Q86TI2-4|DPP9	MULTI-MATCH	OvCa9_classI_Rep2	2		2	584.277106	1166.53966	0.072129	4.2143E-05	-0.51026	-0.00029814	-0.43814	-0.00025599	584.2769062223499	123.86	0.73994	123.63	123.43	124.17	-0.23193	-0.16168	-0.0016455	NaN	95.815	21	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13596			11395	4952	9370	9380							-0.0369484741938777
FLDGHDLQL	9	Unmodified	_FLDGHDLQL_					0	0	0		nc|ENSG00000196588|Q969V6|MRTFA;ENSG00000196588|ENST00000355630|MRTFA;SPECC1L-MKL1|1|fusion	nc|ENSG00000196588|Q969V6|MRTFA;SPECC1L-MKL1|1|fusion	nc|ENSG00000196588|Q969V6|MRTFA	MULTI-MSMS	OvCa99_classI_Rep5	1	529.2700805664062	2	529.269281	1056.52401	2.0165	0.0010673	3.3583	0.0017774	5.3748	0.0028447	529.2709143301529	110.62	2.1589	110.62	109.86	112.02	0					135	47	5	0	0	0	0.10363	1	12480	12480		96.19	13.95	1	8549300			11396	8631;32917	9371	9381	12331	12331					-0.0019913393641672883
FLDGNELTL	9	Unmodified	_FLDGNELTL_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	OvCa99_classI_Rep5	1	511.2647705078125	2	511.263665	1020.51278	1.099	0.00056186	0.86312	0.00044128	1.9621	0.0010031	511.2639515577642	132.53	2.1106	132.53	132.13	134.24	0					106	44	5	0	0	0	0.0078217	3	15404	15404;15430;15466		180.93	19.028	1	2175700			11397	9142	9372	9382	12332;12333;12334	12332					0.003340439694284214
FLDGNEMTL	9	Unmodified	_FLDGNEMTL_					0	0	0		ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	OvCa99_classI_Rep5	1	520.2431640625	2	520.241875	1038.4692	0.84078	0.00043741	0.65929	0.00034299	1.5001	0.0007804	520.2422035136614	123.21	2.313	123.21	122.86	125.17	0					97	50	2	0	0	0	0.002835	6	14222	14177;14197;14222;14247;14273;14314		231.3	68.992	1	6076700			11398	7014	9373	9383	12335;12336;12337;12338;12339;12340	12337					-0.04849888799344626
FLDHIIASV	9	Unmodified	_FLDHIIASV_					0	0	0		CTNNA1-KDM3B|1|fusion;nc|ENSG00000120733|Q7LBC6-2|KDM3B;ENSG00000120733|ENST00000314358|KDM3B;nc|ENSG00000120733|Q7LBC6-3|KDM3B	CTNNA1-KDM3B|1|fusion	CTNNA1-KDM3B|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	507.786865234375	2	507.784567	1013.55458	2.0978	0.0010653	0.44547	0.0002262	2.5433	0.0012915	507.78467215863327	118	0.97565	118	117.65	118.63	0					40	20	3	0	0	0	0.11171	1	13528	13528		94.006	33.712	1	644820			11399	693	9374	9384	12341	12341					0.048346444486242035
FLDITNPKA	9	Unmodified	_FLDITNPKA_					0	0	0		nc|ENSG00000070010|Q92890-3|UFD1;ENST00000459854.5_1_22:19442175-19463025:-|nuORF;ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1;ENST00000489406.1_1_22:19455337-19466647:-|nuORF	nc|ENSG00000070010|Q92890-3|UFD1	nc|ENSG00000070010|Q92890-3|UFD1	MULTI-MSMS	OvCa99_classI_Rep5	1	509.7829284667969	2	509.782025	1017.5495	2.1029	0.001072	-0.69578	-0.0003547	1.4072	0.00071735	509.7817087308641	87.079	0.61892	87.079	86.844	87.463	0					26	14	3	0	0	0	0.14855	1	9206	9206		85.161	13.283	1	2036300			11400	1414	9375	9385	12342	12342					0.04142340585997317
FLDITNPKA	9	Unmodified	_FLDITNPKA_					0	0	0		nc|ENSG00000070010|Q92890-3|UFD1;ENST00000459854.5_1_22:19442175-19463025:-|nuORF;ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1;ENST00000489406.1_1_22:19455337-19466647:-|nuORF	nc|ENSG00000070010|Q92890-3|UFD1	nc|ENSG00000070010|Q92890-3|UFD1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	509.782025	1017.5495	1.5851	0.00080804	-2.8579	-0.0014569	-1.2728	-0.00064886	509.7805098749555	88.665	0.98467	87.298	86.839	87.823	-1.3676	0.13128	-0.0013293	NaN	85.161	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28809			11401	1414	9375	9385							0.04142340585997317
FLDITNPKA	9	Unmodified	_FLDITNPKA_					0	0	0		nc|ENSG00000070010|Q92890-3|UFD1;ENST00000459854.5_1_22:19442175-19463025:-|nuORF;ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1;ENST00000489406.1_1_22:19455337-19466647:-|nuORF	nc|ENSG00000070010|Q92890-3|UFD1	nc|ENSG00000070010|Q92890-3|UFD1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	509.782025	1017.5495	-0.58947	-0.0003005	-1.2539	-0.00063922	-1.8434	-0.00093972	509.7813814942677	89.294	1.2837	87.163	86.413	87.697	-2.1309	-0.0033124	0.0003061	NaN	85.161	44	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44853			11402	1414	9375	9385							0.04142340585997317
FLDITNPKA	9	Unmodified	_FLDITNPKA_					0	0	0		nc|ENSG00000070010|Q92890-3|UFD1;ENST00000459854.5_1_22:19442175-19463025:-|nuORF;ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1;ENST00000489406.1_1_22:19455337-19466647:-|nuORF	nc|ENSG00000070010|Q92890-3|UFD1	nc|ENSG00000070010|Q92890-3|UFD1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	509.782025	1017.5495	0.45961	0.0002343	-2.2563	-0.0011502	-1.7967	-0.00091591	509.7807133297574	89.7	1.2063	87.125	86.801	88.007	-2.575	-0.040931	-0.00071589	NaN	85.161	33	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61343			11403	1414	9375	9385							0.04142340585997317
FLDKIDVI	8	Unmodified	_FLDKIDVI_					0	0	0		DLGAP1-GNAS|20|fusion;DLGAP1-GNAS|17|fusion;DLGAP1-GNAS|18|fusion;DLGAP1-GNAS|19|fusion;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;DLGAP1-GNAS|21|fusion;DLGAP1-GNAS|14|fusion;DLGAP1-GNAS|15|fusion;ENSG00000087460|ENST00000371085|GNAS;DLGAP1-GNAS|23|fusion;SETD3-GNAS|1|fusion;SETD3-GNAS|4|fusion;DLGAP1-GNAS|3|fusion;SETD3-GNAS|2|fusion;SETD3-GNAS|3|fusion;nc|ENSG00000087460|P63092-4|GNAS;CADM1-GNAS|4|fusion;DLGAP1-GNAS|24|fusion;DLGAP1-GNAS|11|fusion;DLGAP1-GNAS|2|fusion;nc|ENSG00000087460|P63092-2|GNAS;DLGAP1-GNAS|10|fusion;DLGAP1-GNAS|13|fusion;DLGAP1-GNAS|16|fusion;DLGAP1-GNAS|1|fusion;DLGAP1-GNAS|4|fusion;DLGAP1-GNAS|7|fusion;DLGAP1-GNAS|9|fusion;DLGAP1-GNAS|6|fusion;DLGAP1-GNAS|12|fusion;DLGAP1-GNAS|5|fusion;DLGAP1-GNAS|8|fusion;DLGAP1-GNAS|22|fusion;CADM1-GNAS|1|fusion;SDCCAG8-GNAS|2|fusion;nc|ENSG00000087460|P63092-3|GNAS;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;SDCCAG8-GNAS|4|fusion;SDCCAG8-GNAS|1|fusion;CADM1-GNAS|2|fusion;CADM1-GNAS|3|fusion;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;SDCCAG8-GNAS|3|fusion;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000487981.5_1_20:57478601-57484479:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS	DLGAP1-GNAS|20|fusion;nc|ENSG00000087460|Q5JWF2-2|GNAS	DLGAP1-GNAS|20|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	481.78314208984375	2	481.781493	961.548434	0.58964	0.00028408	1.6272	0.00078393	2.2168	0.001068	481.78216559756373	114.24	1.1931	114.24	113.88	115.07	0					48	25	3	0	0	0	0.37357	2	13026	13026;13049		93.195	7.836	1	730480			11404	739;14909	9376	9386	12343;12344	12343					0.06612126217078185
FLDKQKLEN	9	Unmodified	_FLDKQKLEN_					0	0	0		L1MEf_dup11696|chr22:19793158-19794011:+|1.3999327460046636|0.4439510689387073|1.66|429.0|28|3|sense	L1MEf_dup11696|chr22:19793158-19794011:+|1.3999327460046636|0.4439510689387073|1.66|429.0|28|3|sense	L1MEf_dup11696|chr22:19793158-19794011:+|1.3999327460046636|0.4439510689387073|1.66|429.0|28|3|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	567.8107299804688	2	567.811313	1133.60807	0.22441	0.00012742	-0.50774	-0.0002883	-0.28333	-0.00016088	567.8109861589273	113.4	1.1856	113.27	112.82	114.01	-0.12174					56	23	3	0	0	0	0.40667	1	10756	10756		51.335	3.6781	1	241960			11405	14628	9377	9387	12345	12345					0.04661397160475644
FLDLAFEMIG	10	Unmodified	_FLDLAFEMIG_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;nc|ENSG00000179869|Q86UQ4-3|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MSMS	OvCa9_classI_Rep2	2	578.2894287109375	2	578.291368	1154.56818	-5.4888	-0.0031741	2.5815	0.0014929	-2.9073	-0.0016812	578.2927598597663	159.22	4.1126	158.99	158.53	162.64	-0.22697					262	82	5	0	0	0	0.58282	1	16258	16258		44.117	1.2525	1	1073400			11406	7844	9378	9388	12346	12346					-0.0029186583444698044
FLDLAFEMIG	10	Unmodified	_FLDLAFEMIG_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;nc|ENSG00000179869|Q86UQ4-3|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.2903442382812	2	578.291368	1154.56818	-7.0215	-0.0040605	4.0307	0.0023309	-2.9908	-0.0017295	578.2935937226971	160.38	4.1596	158.77	158.05	162.21	-1.6101					391	105	5	0	0	0	0.28791	2	15880	15880;16086		82.305	1.1893	1	1912500			11407	7844	9378	9388	12347;12348	12347					-0.0029186583444698044
FLDLWNTF	8	Unmodified	_FLDLWNTF_					0	0	0		ENSG00000150401|ENST00000478244|DCUN1D2	ENSG00000150401|ENST00000478244|DCUN1D2	ENSG00000150401|ENST00000478244|DCUN1D2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.2871704101562	2	528.263468	1054.51238	-0.033867	-1.7891E-05	-0.93892	-0.000496	-0.97279	-0.00051389	528.2627728531137	89.692	0.94939	87.117	86.801	87.75	-2.575					44	18	3	0	0	0	0.028476	1	7713	7713		39.253	6.4404	1	122360			11408	5506	9379	9389	12349	12349					-0.012693309597580082
FLDNAIMIV	9	Unmodified	_FLDNAIMIV_					0	0	0		ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	MULTI-MSMS	OvCa99_classI_Rep5	1	518.2830200195312	2	518.280803	1034.54705	0.43287	0.00022435	1.0457	0.00054196	1.4786	0.0007663	518.2813918354392	152.69	0.99449	152.69	152.4	153.4	0					37	23	2	0	0	0	0.3076	1	17879	17879		62.107	12.083	1	97514			11409	6508	9380	9390	12350	12350					0.031161688566726298
FLDNAIMIV	9	Oxidation (M)	_FLDNAIM(Oxidation (M))IV_		FLDNAIM(1)IV		FLDNAIM(66)IV	0	0	1		ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	MULTI-MSMS	OvCa9_classI_Rep3	3	526.2771606445312	2	526.27826	1050.54197	-2.1061	-0.0011084	2.0846	0.0010971	-0.021487	-1.1308E-05	526.2793379665477	138.07	1.1275	136.98	136.73	137.86	-1.0858					38	22	2	0	0	0	0.27001	1	11281	11281		66.429	6.311	1	31872			11410	6508	9380	9391	12351	12351		205			0.018718649940410614
FLDNAIMIV	9	Oxidation (M)	_FLDNAIM(Oxidation (M))IV_		FLDNAIM(1)IV		FLDNAIM(59)IV	0	0	1		ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	ENSG00000164983|ENST00000297632|TMEM65	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.2821044921875	2	526.27826	1050.54197	1.0168	0.0005351	-1.0062	-0.00052956	0.010524	5.5387E-06	526.2776221415979	138.46	0.94669	136.93	136.6	137.54	-1.5284					33	20	2	0	0	0	0.33652	1	13476	13476		58.782	16.386	1	36892			11411	6508	9380	9391	12352	12352		205			0.018718649940410614
FLDNLHINL	9	Unmodified	_FLDNLHINL_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MSMS	OvCa99_classI_Rep5	1	549.8019409179688	2	549.800749	1097.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.29	1	130.29	129.79	130.79	0								0	0	0	0.024444	1	15118	15118		127.46	34.266	1				11412	2246	9381	9392	12353	12353					0.04205431851596586
FLDNLHINL	9	Unmodified	_FLDNLHINL_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000102595|Q9NYU1-2|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MSMS	OvCa99_classI_Rep5	1	549.80078125	2	549.800749	1097.58694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.49	1	130.49	129.99	130.99	0								0	0	0	0.03228	1	15144	15144		87.696	18.91	1				11413	2246	9381	9392	12354	12354					0.04205431851596586
FLDPIKAYL	9	Unmodified	_FLDPIKAYL_					0	0	0		nc|ENSG00000069122|Q8IZF2-3|ADGRF5;nc|ENSG00000069122|Q8IZF2-2|ADGRF5;ENSG00000069122|ENST00000283296|ADGRF5;ADGRF5|p.V638Lfs*20|1|0.07|ENSG00000069122|chr6:46865120-46865120|C/-|frameshift_variant;ADGRF5|p.I725Dfs*3|1|0.3|ENSG00000069122|chr6:46862898-46862914|TGGAGCAGACTGTTTAT/-|frameshift_variant	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	MULTI-MSMS	OvCa99_classI_Rep5	1	540.31201171875	2	540.310418	1078.60628	1.5798	0.00085359	-0.019765	-1.0679E-05	1.5601	0.00084291	540.3102963106065	130.08	2.0369	130.08	129.77	131.81	0					118	42	5	0	0	0	0.026923	3	15075	15075;15099;15124		138.83	48.791	1	4306100			11414	1404	9382	9393	12355;12356;12357	12355					0.07012388142516102
FLDPLKTQGN	10	Unmodified	_FLDPLKTQGN_					0	0	0		ENST00000497474.1_1_1:161475257-161476024:+|nuORF	ENST00000497474.1_1_1:161475257-161476024:+|nuORF	ENST00000497474.1_1_1:161475257-161476024:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	566.8059692382812	2	566.803488	1131.59242	-0.5658	-0.0003207	4.3222	0.0024498	3.7564	0.0021291	566.8055108001586	102.51	2.8809	100.98	99.793	102.67	-1.5211					174	54	4	0	0	0	0.44722	1	7052	7052		61.691	4.9702	1	408900			11415	12807	9383	9394	12358	12358					0.03189110643438653
FLDPNNIPKA	10	Unmodified	_FLDPNNIPKA_					0	0	0		INTS4-ALG8|4|fusion;INTS4-ALG8|3|fusion;ENST00000532552.2_1_11:77817934-77820625:-|nuORF;nc|ENSG00000159063|Q9BVK2-2|ALG8;ENSG00000159063|ENST00000299626|ALG8	INTS4-ALG8|4|fusion	INTS4-ALG8|4|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	564.8076171875	2	564.806031	1127.59751	3.0901	0.0017453	-1.192	-0.00067323	1.8982	0.0010721	564.8052829159379	89.379	1.0609	89.379	89.082	90.143	0					67	25	4	0	0	0	0.028355	2	9534	9534;9564		138.06	41.872	1	13764000			11416	14506	9384	9395	12359;12360	12359					0.038814145060541705
FLDPNNIPKA	10	Unmodified	_FLDPNNIPKA_					0	0	0		INTS4-ALG8|4|fusion;INTS4-ALG8|3|fusion;ENST00000532552.2_1_11:77817934-77820625:-|nuORF;nc|ENSG00000159063|Q9BVK2-2|ALG8;ENSG00000159063|ENST00000299626|ALG8	INTS4-ALG8|4|fusion	INTS4-ALG8|4|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	564.8069458007812	2	564.806031	1127.59751	-0.91576	-0.00051723	0.36362	0.00020538	-0.55214	-0.00031185	564.806411834124	90.681	1.6253	88.601	88.259	89.885	-2.0805					58	31	2	0	0	0	0.20836	1	5642	5642		93.143	28.936	1	528110			11417	14506	9384	9395	12361	12361					0.038814145060541705
FLDPNNIPKA	10	Unmodified	_FLDPNNIPKA_					0	0	0		INTS4-ALG8|4|fusion;INTS4-ALG8|3|fusion;ENST00000532552.2_1_11:77817934-77820625:-|nuORF;nc|ENSG00000159063|Q9BVK2-2|ALG8;ENSG00000159063|ENST00000299626|ALG8	INTS4-ALG8|4|fusion	INTS4-ALG8|4|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.8078002929688	2	564.806031	1127.59751	0.76543	0.00043232	-1.1253	-0.00063558	-0.35987	-0.00020326	564.8054509023335	91.072	1.6797	88.529	88.193	89.873	-2.5425					79	32	5	0	0	0	0.13777	3	7875	7862;7875;7894		104.06	31.178	1	446240			11418	14506	9384	9395	12362;12363;12364	12363					0.038814145060541705
FLDPRPLTV	9	Unmodified	_FLDPRPLTV_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.306396484375	2	529.305667	1056.59678	1.0094	0.00053427	-0.14801	-7.8344E-05	0.86137	0.00045593	529.3056000244466	103.15	3.2884	103.15	102.59	105.88	0					187	76	5	0	0	0	0.029147	6	11518	11490;11518;11548;11578;11603;11633		136.27	56.556	1	59571000			11419	4651	9385	9396	12365;12366;12367;12368;12369;12370	12366					0.07074619856962272
FLDPRPLTV	9	Unmodified	_FLDPRPLTV_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MSMS	OvCa9_classI_Rep3	3	529.3068237304688	2	529.305667	1056.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.51	1	103.08	102.58	103.58	-1.4347								0	0	0	0.028892	1	7284	7284		112.41	27.25	1				11420	4651	9385	9396	12371	12371					0.07074619856962272
FLDPRPLTV	9	Unmodified	_FLDPRPLTV_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MSMS	OvCa9_classI_Rep3	3	529.306396484375	2	529.305667	1056.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.56	1	103.12	102.62	103.62	-1.4347								0	0	0	0.023636	1	7289	7289		98.582	27.766	1				11421	4651	9385	9396	12372	12372					0.07074619856962272
FLDPRPLTV	9	Unmodified	_FLDPRPLTV_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MSMS	OvCa9_classI_Rep3	3	529.3067016601562	2	529.305667	1056.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.61	1	103.18	102.68	103.68	-1.4347								0	0	0	0.028892	1	7296	7296		112.41	27.25	1				11422	4651	9385	9396	12373	12373					0.07074619856962272
FLDPRPLTV	9	Unmodified	_FLDPRPLTV_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MSMS	OvCa9_classI_Rep3	3	529.306884765625	2	529.305667	1056.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.67	1	103.24	102.74	103.74	-1.4347								0	0	0	0.1023	1	7303	7303		70.816	24.864	1				11423	4651	9385	9396	12374	12374					0.07074619856962272
FLDPRPLTV	9	Unmodified	_FLDPRPLTV_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MSMS	OvCa9_classI_Rep3	3	529.3060302734375	2	529.305667	1056.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.72	1	103.35	102.85	103.85	-1.372								0	0	0	0.028307	1	7309	7309		90.601	10.146	1				11424	4651	9385	9396	12375	12375					0.07074619856962272
FLDPRPLTV	9	Unmodified	_FLDPRPLTV_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MSMS	OvCa9_classI_Rep3	3	529.3063354492188	2	529.305667	1056.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.78	1	103.43	102.93	103.93	-1.3482								0	0	0	0.042186	1	7315	7315		80.455	24.021	1				11425	4651	9385	9396	12376	12376					0.07074619856962272
FLDPRPLTV	9	Unmodified	_FLDPRPLTV_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MSMS	OvCa9_classI_Rep3	3	529.306396484375	2	529.305667	1056.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.83	1	103.48	102.98	103.98	-1.3482								0	0	0	0.16747	1	7321	7321		58.23	12.278	1				11426	4651	9385	9396	12377	12377					0.07074619856962272
FLDPRPLTV	9	Unmodified	_FLDPRPLTV_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MSMS	OvCa9_classI_Rep3	3	529.306396484375	2	529.305667	1056.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.93	1	103.58	103.08	104.08	-1.3482								0	0	0	0.16607	1	7333	7333		62.107	3.3255	1				11427	4651	9385	9396	12378	12378					0.07074619856962272
FLDPRPLTV	9	Unmodified	_FLDPRPLTV_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MSMS	OvCa9_classI_Rep3	3	529.3067626953125	2	529.305667	1056.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.99	1	103.64	103.14	104.14	-1.3482								0	0	0	0.17002	1	7340	7340		51.193	1.7511	1				11428	4651	9385	9396	12379	12379					0.07074619856962272
FLDPRPLTV	9	Unmodified	_FLDPRPLTV_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.3056640625	2	529.305667	1056.59678	-1.0307	-0.00054553	0.40361	0.00021363	-0.62704	-0.0003319	529.305915411379	105.23	2.8607	103.22	102.74	105.6	-2.0161					96	55	4	0	0	0	0.084918	4	9543	9534;9543;9555;9567		101.25	26.209	1	1348100			11429	4651	9385	9396	12380;12381;12382;12383	12381					0.07074619856962272
FLDPRPLTVV	10	Unmodified	_FLDPRPLTVV_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MSMS	OvCa99_classI_Rep5	1	578.841796875	2	578.839874	1155.66519	0.82622	0.00047825	1.2058	0.00069794	2.032	0.0011762	578.8403591172686	114	0.72405	114	113.7	114.42	0					47	15	4	0	0	0	0.32141	2	12995	12995;13019		78.264	19.482	1	1137100			11430	4651	9386	9397	12384;12385	12384					0.09358864436831027
FLDPRPLTVV	10	Unmodified	_FLDPRPLTVV_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	578.839874	1155.66519	-0.39372	-0.0002279	0.38505	0.00022288	-0.008665	-5.0157E-06	578.8399422446176	114.12	1.2332	114	113.71	114.95	-0.11777	0.084024	-0.00022159	NaN	78.264	46	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50302			11431	4651	9386	9397							0.09358864436831027
FLDPRPLTVV	10	Unmodified	_FLDPRPLTVV_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	578.839874	1155.66519	-1.1169	-0.00064651	1.3129	0.00075993	0.19595	0.00011342	578.8404155435572	114.93	1.1842	113.87	113.6	114.78	-1.055	-0.048749	0.0008525	NaN	78.264	50	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68092			11432	4651	9386	9397							0.09358864436831027
FLDPRPLTVV	10	Unmodified	_FLDPRPLTVV_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	578.839874	1155.66519	-0.20814	-0.00012048	0.015452	8.9443E-06	-0.19268	-0.00011153	578.8397075059414	115.21	1.2968	113.81	113.51	114.81	-1.3977	-0.11201	-0.00064947	NaN	78.264	49	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68004			11433	4651	9386	9397							0.09358864436831027
FLDPRQPSYN	10	Unmodified	_FLDPRQPSYN_					0	0	0		ENSG00000198876|ENST00000361264|DCAF12	ENSG00000198876|ENST00000361264|DCAF12	ENSG00000198876|ENST00000361264|DCAF12	MSMS	OvCa99_classI_Rep5	1	413.2667541503906	3	412.871772	1235.59349	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.885	1	20.885	20.385	21.385	0								0	0	0	0.13951	1	66	66		24.232	4.2013	1				11434	8896	9387	9398	12386	12386					-0.014886749876495742
FLDQLSQKM	9	Unmodified	_FLDQLSQKM_					0	0	0		ENSG00000120262|ENST00000239374|CCDC170	ENSG00000120262|ENST00000239374|CCDC170	ENSG00000120262|ENST00000239374|CCDC170	MULTI-SECPEP	OvCa9_classI_Rep3	3	555.3253173828125	2	555.286617	1108.55868	-1.51	-0.00083849	2.2641	0.0012572	0.75405	0.00041871	555.2876282643604	85.2	0.74404	82.98	82.792	83.536	-2.2204					26	14	2	0	0	0	0.027425	1	5000	5000		79.713	21.483	1	80552			11435	3424	9388	9399	12387	12387					0.008743658800312915
FLDRLCVGRR	10	Unmodified	_FLDRLCVGRR_					0	0	0		ENST00000565324.1_16:18861776-18863432:-|nuORF	ENST00000565324.1_16:18861776-18863432:-|nuORF	ENST00000565324.1_16:18861776-18863432:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	412.23199462890625	3	412.232758	1233.67644	1.934	0.00079726	-4.4887	-0.0018504	-2.5547	-0.0010531	412.2308161483838	65.879	3.828	62.933	62.452	66.28	-2.9459					181	75	4	0	0	0	0.67987	1	2657	2657		32.751	5.7032	1	1016400			11436	13818	9389	9400	12388	12388					0.06895363259332044
FLDSERNSQ	9	Unmodified	_FLDSERNSQ_					0	0	0			REV__nc|ENSG00000116985|P34820-2|BMP8B	REV__nc|ENSG00000116985|P34820-2|BMP8B	MULTI-SECPEP	OvCa9_classI_Rep2	2	547.326904296875	2	548.256902	1094.49925	-0.027524	-1.509E-05	-0.20996	-0.00011511	-0.23749	-0.0001302	548.2569947540671	93.822	0.6798	92.722	92.434	93.114	-1.0995					15	12	2	0	0	0	0.027418	1	8383	8383		79.451	26.1	1	22269	+		11437	18329	9390	9401	12389	12389					-0.04421813809813102
FLDSLQIAR	9	Unmodified	_FLDSLQIAR_					0	0	0		ENST00000470645.5_1_7:150732911-150733055:+|nuORF	ENST00000470645.5_1_7:150732911-150733055:+|nuORF	ENST00000470645.5_1_7:150732911-150733055:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	531.7999877929688	2	531.800749	1061.58694	-2.0802	-0.0011063	3.4629	0.0018415	1.3826	0.00073527	531.8016786180416	117.39	1.3379	117.26	116.72	118.05	-0.12869					51	26	4	0	0	0	0.46356	1	11261	11261		45.972	0	1	182060			11438	12367	9391	9402	12390	12390					0.05861431851622001
FLEADMLTL	9	Unmodified	_FLEADMLTL_					0	0	0			REV__ENSG00000159496|ENST00000290691|RGL4	REV__ENSG00000159496|ENST00000290691|RGL4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.314453125	2	526.770268	1051.52598	-3.0654	-0.0016148	-4.2765	-0.0022527	-7.3419	-0.0038675	526.7677942440203	126.1	0.34648	124.69	124.53	124.88	-1.4143					9	6	2	0	0	0	0.027426	1	11982	11982		63.306	15.391	1	9242.4	+		11439	20619	9392	9403	12391	12391					0.0022815875715878065
FLEDQYLMK	9	Unmodified	_FLEDQYLMK_					0	0	0			REV__ENSG00000072657|ENST00000261180|TRHDE	REV__ENSG00000072657|ENST00000261180|TRHDE	MULTI-MSMS	OvCa99_classI_Rep5	1	593.793212890625	2	593.794275	1185.574	1.2281	0.00072921	-2.158	-0.0012814	-0.92998	-0.00055222	593.7927932658986	131.38	0.61128	131.38	131.1	131.72	0					29	12	3	0	0	0	0.2422	1	15259	15259		69.628	5.4204	1	225910	+		11440	16918	9393	9404	12392	12392					-0.01136767322805099
FLEDQYLMK	9	Unmodified	_FLEDQYLMK_					0	0	0			REV__ENSG00000072657|ENST00000261180|TRHDE	REV__ENSG00000072657|ENST00000261180|TRHDE	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	593.794275	1185.574	1.2281	0.00072921	-2.158	-0.0012814	-0.92998	-0.00055222	593.7927932658986	131.38	0.61128	131.38	131.1	131.72	0	0	0	NaN	69.628	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225910	+		11441	16918	9393	9404							-0.01136767322805099
FLEGSWAL	8	Unmodified	_FLEGSWAL_					0	0	0		ENST00000527688.5_1_12:104742205-104742367:+|nuORF	ENST00000527688.5_1_12:104742205-104742367:+|nuORF	ENST00000527688.5_1_12:104742205-104742367:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	461.2568664550781	2	461.737086	921.459619	-0.64256	-0.00029669	-4.0425	-0.0018666	-4.6851	-0.0021633	461.73575209234605	69.643	0.65645	69.643	69.433	70.089	0					23	15	2	0	0	0	0.028476	1	6697	6697		96.048	33.94	1	210100			11442	13240	9394	9405	12393	12393					-0.004252890225757255
FLEKLLPPV	9	Unmodified	_FLEKLLPPV_					0	0	0		ENST00000472213.1_1_1:24120901-24121219:+|nuORF;ENSG00000011009|ENST00000374514|LYPLA2	ENST00000472213.1_1_1:24120901-24121219:+|nuORF	ENST00000472213.1_1_1:24120901-24121219:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	528.3285522460938	2	528.328611	1054.64267	0.61734	0.00032616	-0.83649	-0.00044194	-0.21915	-0.00011578	528.3279822328798	127.76	3.0131	127.54	127.09	130.11	-0.22697					168	60	4	0	0	0	0.12365	11	12497	12497;12501;12508;12538;12549;12555;12563;12567;12573;12587;12593		90.777	34.056	1	313700			11443	953	9395	9406	12394;12395;12396;12397;12398;12399;12400;12401;12402;12403;12404	12394					0.11753265039214966
FLEKLLPPV	9	Unmodified	_FLEKLLPPV_					0	0	0		ENST00000472213.1_1_1:24120901-24121219:+|nuORF;ENSG00000011009|ENST00000374514|LYPLA2	ENST00000472213.1_1_1:24120901-24121219:+|nuORF	ENST00000472213.1_1_1:24120901-24121219:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	528.3282470703125	2	528.328611	1054.64267	0.33475	0.00017686	-0.40473	-0.00021383	-0.069982	-3.6974E-05	528.3282724916941	128.79	3.3005	127.69	127.27	130.57	-1.0933					188	66	4	0	0	0	0.24951	9	10156	10156;10169;10175;10181;10187;10199;10205;10250;10297		68.787	20.871	1	235110			11444	953	9395	9406	12405;12406;12407;12408;12409;12410;12411;12412;12413	12405					0.11753265039214966
FLEKLLPPV	9	Unmodified	_FLEKLLPPV_					0	0	0		ENST00000472213.1_1_1:24120901-24121219:+|nuORF;ENSG00000011009|ENST00000374514|LYPLA2	ENST00000472213.1_1_1:24120901-24121219:+|nuORF	ENST00000472213.1_1_1:24120901-24121219:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.328125	2	528.328611	1054.64267	0.83538	0.00044135	-1.0239	-0.00054094	-0.18848	-9.9581E-05	528.3278477712166	129.01	4.1824	127.56	127.15	131.33	-1.4565					215	84	4	0	0	0	0.14998	10	12340	12340;12364;12388;12400;12413;12452;12462;12475;12486;12558		84.916	20.708	1	383740			11445	953	9395	9406	12414;12415;12416;12417;12418;12419;12420;12421;12422;12423	12414					0.11753265039214966
FLELCQSPEG	10	Carbamidomethyl (C)	_FLELC(Carbamidomethyl (C))QSPEG_	FLELC(1)QSPEG		FLELC(48)QSPEG		0	1	0		ENST00000554334.5_1_14:65482315-65499209:+|nuORF;nc|ENSG00000257365|P49356-2|FNTB;ENSG00000257365|ENST00000246166|FNTB	ENST00000554334.5_1_14:65482315-65499209:+|nuORF	ENST00000554334.5_1_14:65482315-65499209:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	590.2688598632812	2	590.271164	1178.52777	-7.7051	-0.0045481	3.5254	0.0020809	-4.1797	-0.0024671	590.2732006658329	159.89	2.9332	158.56	157.96	160.89	-1.3316					148	58	4	0	0	0	0.55359	1	13882	13882		47.657	6.8792	1	239760			11446	9472	9396	9407	12424	12424	95				-0.05434832224887032
FLELLDGKKDN	11	Unmodified	_FLELLDGKKDN_					0	0	0		tr|A0A553SPW0|A0A553SPW0_NIACIAspartokinaseOS=NialliacirculansOX=1397GN=CEQ21_10875PE=3SV=1	tr|A0A553SPW0|A0A553SPW0_NIACIAspartokinaseOS=NialliacirculansOX=1397GN=CEQ21_10875PE=3SV=1	tr|A0A553SPW0|A0A553SPW0_NIACIAspartokinaseOS=NialliacirculansOX=1397GN=CEQ21_10875PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	431.2334899902344	3	431.234599	1290.68197	-0.65762	-0.00028359	-1.634	-0.00070463	-2.2916	-0.00098822	431.23389730645385	39.936	1.5833	37.227	36.953	38.536	-2.7097					108	31	5	0	0	0	0.57194	1	1977	1977		47.228	3.5769	1	918010			11447	34094	9397	9408	12425	12425					0.048253205321543646
FLEPDLPVK	9	Unmodified	_FLEPDLPVK_					0	0	0			REV__ENST00000530568.5_1_8:38314980-38324137:-|nuORF	REV__ENST00000530568.5_1_8:38314980-38324137:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.2999267578125	2	529.30005	1056.58555	-2.3172	-0.0012265	-0.40283	-0.00021322	-2.7201	-0.0014397	529.2996062863574	48.92	1.2972	45.812	45.399	46.697	-3.1077					60	23	4	0	0	0	0.40667	1	2738	2738		51.335	3.6781	1	315300	+		11448	27206	9398	9409	12426	12426					0.059517977628502194
FLEVKPLAY	9	Unmodified	_FLEVKPLAY_					0	0	0			REV__ADAMTS18|p.M864Efs*9|1|0.07|ENSG00000140873|chr16:77300347-77300348|-/ATGCTTCTATTTGTAAATAATTC|frameshift_variant	REV__ADAMTS18|p.M864Efs*9|1|0.07|ENSG00000140873|chr16:77300347-77300348|-/ATGCTTCTATTTGTAAATAATTC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3080444335938	2	540.310418	1078.60628	2.2156	0.0011971	-2.9655	-0.0016023	-0.74994	-0.0004052	540.3086725512119	130.55	1.0325	129.07	128.81	129.84	-1.4779					48	20	3	0	0	0	0.40667	1	12542	12542		51.335	7.2187	1	45365	+		11449	15565	9399	9410	12427	12427					0.07012388142516102
FLEVKPLAY	9	Unmodified	_FLEVKPLAY_					0	0	0			REV__ADAMTS18|p.M864Efs*9|1|0.07|ENSG00000140873|chr16:77300347-77300348|-/ATGCTTCTATTTGTAAATAATTC|frameshift_variant	REV__ADAMTS18|p.M864Efs*9|1|0.07|ENSG00000140873|chr16:77300347-77300348|-/ATGCTTCTATTTGTAAATAATTC|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	540.310418	1078.60628	0.42116	0.00022756	-0.70032	-0.00037839	-0.27916	-0.00015083	540.30988770386	129.23	0.79099	129	128.72	129.51	-0.22696	-0.067248	0.0010025	NaN	51.335	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43816	+		11450	15565	9399	9410							0.07012388142516102
FLEVTMMALV	10	Oxidation (M)	_FLEVTMM(Oxidation (M))ALV_		FLEVTM(0.001)M(0.999)ALV		FLEVTM(-29)M(29)ALV	0	0	1			REV__ENSG00000117425|ENST00000372192|PTCH2	REV__ENSG00000117425|ENST00000372192|PTCH2	MULTI-MSMS	OvCa9_classI_Rep4_	4	585.2984008789062	2	585.300878	1168.5872	-7.0104	-0.0041032	1.2951	0.00075801	-5.7153	-0.0033452	585.3015332240002	160.22	1.9597	158.61	158.24	160.2	-1.6101					84	45	2	0	0	0	0.33316	1	15822	15822		76.847	19.035	2	141830	+		11451	18351	9400	9411	12428	12428		425			0.009653474649212512
FLEVTMMALV	10	Oxidation (M)	_FLEVTMM(Oxidation (M))ALV_					0	0	1			REV__ENSG00000117425|ENST00000372192|PTCH2	REV__ENSG00000117425|ENST00000372192|PTCH2	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	585.300878	1168.5872	-7.0104	-0.0041032	1.2951	0.00075801	-5.7153	-0.0033452	585.3015332240002	160.22	1.9597	158.61	158.24	160.2	-1.6101	0.035092	8.5587E-05	NaN	76.847	84	45	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141830	+		11452	18351	9400	9411				425			0.009653474649212512
FLFALYIMC	9	Unmodified	_FLFALYIMC_					0	0	0		nc|ENSG00000112414|Q86SQ4-2|ADGRG6;nc|ENSG00000112414|Q86SQ4|ADGRG6;nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENSG00000112414|ENST00000367609|ADGRG6;ENST00000415128.6_1_6:142623466-142692070:+|nuORF;ENST00000545477.1_1_6:142630681-142703096:+|nuORF	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	561.2803955078125	2	560.782124	1119.5497	0.043182	2.4215E-05	-0.16752	-9.394E-05	-0.12433	-6.9724E-05	560.78192448367	43.273	1.2316	40.266	39.906	41.137	-3.0074					28	23	2	0	0	0	0.027462	1	2135	2135		29.842	0	1	35900			11453	2904	9401	9412	12429	12429					-0.0052969901003052655
FLFCGFFF	8	Carbamidomethyl (C)	_FLFC(Carbamidomethyl (C))GFFF_	FLFC(1)GFFF		FLFC(55)GFFF		0	1	0		HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|123|1|anti-sense	HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|123|1|anti-sense	HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|123|1|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	542.7489624023438	2	542.751682	1083.48881	1.5401	0.00083587	-2.6338	-0.0014295	-1.0938	-0.00059365	542.749940009231	148.35	0.78918	148.35	148.08	148.87	0					29	15	3	0	0	0	0.64315	1	17362	17362		54.895	10.364	1	101400			11454	14462	9402	9413	12430	12430	163				-0.04959467997946376
FLFDGSANL	9	Unmodified	_FLFDGSANL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;COL6A3|p.T1393Cfs*9|1|0.09|ENSG00000163359|chr2:237371828-237371840|GCTCCCGGAAGGT/-|frameshift_variant;COL6A3|p.K1001Nfs*34|1|0.23|ENSG00000163359|chr2:237376800-237376839|TTTTAAGAGATTCACTATCTGTGGATGAAGATCTCCAATC/-|frameshift_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	492.2470397949219	2	492.245275	982.475997	0.9476	0.00046645	1.3188	0.00064915	2.2663	0.0011156	492.24581885279093	138.9	2.5387	138.9	138.59	141.13	0					109	52	5	0	0	0	0.0076794	4	16221	16199;16221;16246;16271		195.81	59.029	1	1725000			11455	6293	9403	9414	12431;12432;12433;12434	12432					-0.015942078564876283
FLFDGSANLV	10	Unmodified	_FLFDGSANLV_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;COL6A3|p.T1393Cfs*9|1|0.09|ENSG00000163359|chr2:237371828-237371840|GCTCCCGGAAGGT/-|frameshift_variant;COL6A3|p.K1001Nfs*34|1|0.23|ENSG00000163359|chr2:237376800-237376839|TTTTAAGAGATTCACTATCTGTGGATGAAGATCTCCAATC/-|frameshift_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	541.7816162109375	2	541.779482	1081.54441	1.2087	0.00065487	-1.0603	-0.00057444	0.14847	8.0437E-05	541.778558039723	150.05	0.8468	150.05	149.75	150.59	0					42	16	4	0	0	0	0.3094	1	17560	17560		79.713	32.055	1	178430			11456	6293	9404	9415	12435	12435					0.006900367233583893
FLFDHLLTL	9	Unmodified	_FLFDHLLTL_					0	0	0		ENSG00000149100|ENST00000531120|EIF3M;nc|ENSG00000149100|Q7L2H7-2|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	MULTI-MSMS	OvCa99_classI_Rep5	1	559.81640625	2	559.815867	1117.61718	1.1031	0.00061756	-0.081307	-4.5517E-05	1.0218	0.00057204	559.8157329084277	160.29	2.9539	160.29	159.57	162.53	0					135	58	4	0	0	0	0.22961	1	18778	18778		71.296	7.9894	1	827610			11457	5441	9405	9416	12436	12436					0.06307790516802925
FLFDKTLLI	9	Unmodified	_FLFDKTLLI_					0	0	0		nc|ENSG00000126822|A1L390-3|PLEKHG3;ENSG00000126822|ENST00000247226|PLEKHG3;ENST00000490180.2_1_14:65197520-65198405:+|nuORF	nc|ENSG00000126822|A1L390-3|PLEKHG3	nc|ENSG00000126822|A1L390-3|PLEKHG3	MULTI-MSMS	OvCa99_classI_Rep5	1	555.8373413085938	2	555.333893	1108.65323	1.5001	0.00083308	0.29144	0.00016185	1.7916	0.00099492	555.3339725612706	146.69	1.5122	146.69	146.28	147.79	0					70	30	5	0	0	0	0.37182	1	17180	17180		54.722	3.3869	1	320180			11458	3804	9406	9417	12437	12437					0.10325247693663187
FLFDTQHFI	9	Unmodified	_FLFDTQHFI_					0	0	0		HEATR1|p.P2064Hfs*2|1|0.04|ENSG00000119285|chr1:236553627-236553627|G/-|frameshift_variant;ENSG00000119285|ENST00000366582|HEATR1;ERO1LB-HEATR1|1|fusion;ERO1LB-HEATR1|2|fusion	HEATR1|p.P2064Hfs*2|1|0.04|ENSG00000119285|chr1:236553627-236553627|G/-|frameshift_variant	HEATR1|p.P2064Hfs*2|1|0.04|ENSG00000119285|chr1:236553627-236553627|G/-|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	584.2974853515625	2	584.295299	1166.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.31	1	135.31	134.81	135.81	0								0	0	0	0.043201	1	15762	15762		79.713	10.085	1				11459	3350	9407	9418	12438	12438					-0.0005797052269826963
FLFEGQRI	8	Unmodified	_FLFEGQRI_					0	0	0		nc|ENSG00000241721|G2XKQ0|SUMO1P1;ENST00000429430.1_1_19:49778527-49778659:+|nuORF;nc|ENSG00000116030|P63165-2|SUMO1;ENST00000439961.2_1_1:160287226-160287493:+|nuORF;ENSG00000116030|ENST00000392246|SUMO1	nc|ENSG00000241721|G2XKQ0|SUMO1P1	nc|ENSG00000241721|G2XKQ0|SUMO1P1	MULTI-MSMS	OvCa99_classI_Rep5	1	505.2789001464844	2	505.276909	1008.53927	1.2146	0.00061373	1.0738	0.00054255	2.2884	0.0011563	505.2772758266978	101.3	1.5622	101.3	100.69	102.25	0					86	36	4	0	0	0	0.33046	1	11256	11256		101.6	5.4103	1	2997800			11460	15340	9408	9419	12439	12439					0.03533777651421133
FLFEPVVKA	9	Unmodified	_FLFEPVVKA_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MSMS	OvCa99_classI_Rep5	1	525.3060913085938	2	525.305136	1048.59572	1.6934	0.00088953	0.91167	0.00047891	2.605	0.0013684	525.305518880395	113.63	1.5012	113.63	113.33	114.84	0					72	34	3	0	0	0	0.1804	3	12966	12937;12966;13007		79.713	13.283	1	2030700			11461	2105	9409	9420	12440;12441;12442	12441					0.07336405488103992
FLFEPVVKA	9	Unmodified	_FLFEPVVKA_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.305419921875	2	525.305136	1048.59572	-0.060509	-3.1786E-05	-0.93413	-0.0004907	-0.99464	-0.00052249	525.3043830774387	114.7	1.6228	113.3	112.99	114.61	-1.3977					73	31	4	0	0	0	0.33652	1	10659	10659		58.782	2.0609	1	172500			11462	2105	9409	9420	12443	12443					0.07336405488103992
FLFFFLHLI	9	Unmodified	_FLFFFLHLI_					0	0	0			REV__ENST00000439268.6_1_19:5916266-5917058:-|nuORF	REV__ENST00000439268.6_1_19:5916266-5917058:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.2874755859375	2	598.846971	1195.67939	0.23731	0.00014211	-0.55444	-0.00033203	-0.31713	-0.00018991	598.8462058951847	31.599	0.14856	31.599	31.509	31.658	0					4	2	2	0	0	0	0.027462	1	1303	1303		21.702	0.7554	1	16565	+		11463	25818	9410	9421	12444	12444					0.08937561655807258
FLFFIQHS	8	Unmodified	_FLFFIQHS_					0	0	0		ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	MULTI-MSMS	OvCa9_classI_Rep2	2	519.7740478515625	2	519.774003	1037.53345	1.2718	0.00066103	-1.3446	-0.00069888	-0.072809	-3.7844E-05	519.7732287380198	127.54	1.531	127.31	126.99	128.52	-0.23578					82	30	5	0	0	0	0.71369	1	12498	12498		40.573	1.3198	1	538520			11464	3659	9411	9422	12445	12445					0.01618679139755841
FLFFIQHS	8	Unmodified	_FLFFIQHS_					0	0	0		ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.7730712890625	2	519.774003	1037.53345	0.17431	9.0599E-05	-0.22265	-0.00011573	-0.048346	-2.5129E-05	519.7738144415306	128.63	2.6649	127.17	126.07	128.73	-1.4565					98	52	4	0	0	0	0.72896	1	12287	12287		37.159	1.5408	1	448430			11465	3659	9411	9422	12446	12446					0.01618679139755841
FLFGALAELVD	11	Unmodified	_FLFGALAELVD_					0	0	0		ENSG00000133422|ENST00000397641|MORC2;MORC2|p.S686Afs*42|1|0.12|ENSG00000133422|chr22:30934896-30934918|TGCACCAGAGGGGCAGGTCGGGA/-|frameshift_variant	ENSG00000133422|ENST00000397641|MORC2	ENSG00000133422|ENST00000397641|MORC2	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8245239257812	2	597.823889	1193.63323	-3.9508	-0.0023619	4.3298	0.0025885	0.37898	0.00022656	597.8264327163745	153.21	0.96877	152.24	151.99	152.96	-0.97301					58	20	4	0	0	0	0.69081	1	13161	13161		32.812	7.2384	1	209360			11466	4220	9412	9423	12447	12447					0.044154519630410505
FLFGLIAAPL	10	Unmodified	_FLFGLIAAPL_					0	0	0			REV__tr|A0A553SJD4|A0A553SJD4_NIACIUndecaprenyl-diphosphataseOS=NialliacirculansOX=1397GN=uppPPE=3SV=1	REV__tr|A0A553SJD4|A0A553SJD4_NIACIUndecaprenyl-diphosphataseOS=NialliacirculansOX=1397GN=uppPPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.3181762695312	2	531.323328	1060.6321	-3.6615	-0.0019454	-4.3431	-0.0023076	-8.0045	-0.004253	531.3209981458791	150.21	1.2922	148.78	148.42	149.72	-1.4344					53	28	3	0	0	0	0.79715	1	14834	14834		19.36	1.892	1	89595	+		11467	29998	9413	9424	12448	12448					0.10421282384800179
FLFIFGCILL	10	Unmodified	_FLFIFGCILL_					0	0	0			REV__tr|A0A7D6VT16|A0A7D6VT16_9CLOTProteintranslocasesubunitSecDOS=ClostridiumintestinaleOX=36845GN=secDPE=3SV=1	REV__tr|A0A7D6VT16|A0A7D6VT16_9CLOTProteintranslocasesubunitSecDOS=ClostridiumintestinaleOX=36845GN=secDPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	592.842529296875	2	593.340664	1184.66677	1.8605	0.0011039	4.3173	0.0025616	6.1778	0.0036655	593.3427513749981	129.5	0.84171	129.5	129.02	129.87	0					23	17	2	0	0	0	0.026578	1	15013	15013		44.531	0	1	167790	+		11468	31565	9414	9425	12449	12449					0.08182782201265582
FLFIFKILPPY	11	Unmodified	_FLFIFKILPPY_					0	0	0		nc|ENSG00000152818|P46939-3|UTRN	nc|ENSG00000152818|P46939-3|UTRN	nc|ENSG00000152818|P46939-3|UTRN	MULTI-SECPEP	OvCa99_classI_Rep5	1	466.5392150878906	3	466.61257	1396.81588	-1.2671	-0.00059126	-0.66404	-0.00030985	-1.9312	-0.0009011	466.94636166360607	43.931	0.12906	43.931	43.823	43.952	0					4	2	2	0	0	0	0.025911	1	2926	2926		31.634	3.0575	1	77204			11469	15102	9415	9426	12450	12450					0.1333463109567674
FLFLARKTN	9	Unmodified	_FLFLARKTN_					0	0	0		ENST00000473000.2_1_6:3267793-3267943:+|nuORF	ENST00000473000.2_1_6:3267793-3267943:+|nuORF	ENST00000473000.2_1_6:3267793-3267943:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.79541015625	2	555.326934	1108.63931	1.0581	0.00058758	1.2157	0.00067509	2.2737	0.0012627	555.3276261471334	101.57	1.3584	101.57	101.02	102.38	0					46	31	2	0	0	0	0.027448	1	11306	11306		27.882	3.3631	1	201250			11470	12402	9416	9427	12451	12451					0.08934014985243266
FLFLFSLFFFF	11	Unmodified	_FLFLFSLFFFF_					0	0	0			REV__nc|ENSG00000261934|Q9Y5G4-2|PCDHGA9	REV__nc|ENSG00000261934|Q9Y5G4-2|PCDHGA9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.802490234375	3	492.265171	1473.77368	0.3374	0.00016609	1.6671	0.00082063	2.0045	0.00098672	492.26510673123926	57.442	0.40874	54.097	53.985	54.393	-3.3449					10	7	2	0	0	0	0.026079	1	3755	3755		25.126	19.427	1	18805	+		11471	29182	9417	9428	12452	12452					0.0557465568722364
FLFLRQGLVL	10	Unmodified	_FLFLRQGLVL_					0	0	0		chr11:14295855-14296055|116|10.14|0.38|4.74|-|2|TE_info:AluJr,AluJr_dup51213,Alu,SINE,donor,+,14296055,14296203|RRAS2,None|1	chr11:14295855-14296055|116|10.14|0.38|4.74|-|2|TE_info:AluJr,AluJr_dup51213,Alu,SINE,donor,+,14296055,14296203|RRAS2,None|1	chr11:14295855-14296055|116|10.14|0.38|4.74|-|2|TE_info:AluJr,AluJr_dup51213,Alu,SINE,donor,+,14296055,14296203|RRAS2,None|1	MULTI-MSMS	OvCa9_classI_Rep2	2	402.5869140625	3	402.585015	1204.73321	1.7232	0.00069375	4.338	0.0017464	6.0612	0.0024402	402.5866891850357	66.627	1.6865	63.932	63.467	65.154	-2.6958					96	33	4	0	0	0	0.64697	1	5185	5185		36.447	0.12911	1	322970			11472	286	9418	9429	12453	12453					0.1390373408751202
FLFNFFYL	8	Unmodified	_FLFNFFYL_					0	0	0		ENST00000547229.1_1_12:93966071-93966593:+|nuORF	ENST00000547229.1_1_12:93966071-93966593:+|nuORF	ENST00000547229.1_1_12:93966071-93966593:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.3087768554688	2	555.786579	1109.5586	-0.29436	-0.0001636	-0.97013	-0.00053918	-1.2645	-0.00070279	555.7860713149896	39.31	0.35372	39.31	39.151	39.505	0					16	7	3	0	0	0	0.028476	1	2282	2282		26.796	0	1	310200			11473	13547	9419	9430	12454	12454					0.008207339423279336
FLFNKVVNL	9	Unmodified	_FLFNKVVNL_					0	0	0		ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	MULTI-MSMS	OvCa99_classI_Rep5	1	547.32470703125	2	547.32386	1092.63317	1.0469	0.000573	0.50656	0.00027725	1.5535	0.00085025	547.3240269869281	123.49	1.7489	123.49	123.14	124.89	0					84	37	4	0	0	0	0.015253	4	14239	14217;14239;14264;14297		152.63	67.274	1	4187200			11474	3397	9420	9431	12455;12456;12457;12458	12456					0.0905549675369457
FLFNKVVNL	9	Unmodified	_FLFNKVVNL_					0	0	0		ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	MULTI-MSMS	OvCa9_classI_Rep2	2	547.323486328125	2	547.32386	1092.63317	0.25648	0.00014038	-0.20433	-0.00011183	0.052153	2.8545E-05	547.3233493505323	123.36	2.9121	123.14	122.76	125.67	-0.22073					176	58	6	0	0	0	0.071436	5	11957	11957;11964;11970;12012;12019		106.42	35.28	1	448660			11475	3397	9420	9431	12459;12460;12461;12462;12463	12459					0.0905549675369457
FLFNKVVNL	9	Unmodified	_FLFNKVVNL_					0	0	0		ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	MULTI-MSMS	OvCa9_classI_Rep3	3	547.322998046875	2	547.32386	1092.63317	0.98261	0.00053781	-1.2091	-0.00066178	-0.22651	-0.00012397	547.322945822617	124.52	2.7629	123.47	123.07	125.83	-1.0519					146	52	5	0	0	0	0.042513	10	9655	9644;9649;9655;9661;9667;9673;9679;9685;9697;9703		124.59	47.748	1	472590			11476	3397	9420	9431	12464;12465;12466;12467;12468;12469;12470;12471;12472;12473	12466					0.0905549675369457
FLFNKVVNL	9	Unmodified	_FLFNKVVNL_					0	0	0		ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.3239135742188	2	547.32386	1092.63317	-1.7732	-0.00097052	1.565	0.00085656	-0.2082	-0.00011395	547.3244958826218	124.88	3.0548	123.49	123.13	126.18	-1.3908					150	60	5	0	0	0	0.062324	9	11858	11835;11846;11858;11870;11882;11894;11907;11919;11931		111.65	47.441	1	512260			11477	3397	9420	9431	12474;12475;12476;12477;12478;12479;12480;12481;12482	12476					0.0905549675369457
FLFQLVWYR	9	Unmodified	_FLFQLVWYR_					0	0	0			REV__ENSG00000187513|ENST00000342280|GJA4	REV__ENSG00000187513|ENST00000342280|GJA4	MULTI-SECPEP	OvCa9_classI_Rep2	2	424.90985107421875	3	424.569365	1270.68626	-0.28508	-0.00012103	2.0082	0.00085263	1.7231	0.00073159	424.5700725911322	64.016	1.3122	61.291	61.128	62.44	-2.7245					31	24	2	0	0	0	0.027462	1	4995	4995		39.253	17.472	1	13999	+		11478	22643	9421	9432	12483	12483					0.06174874536350217
FLFSAATVKTK	11	Unmodified	_FLFSAATVKTK_					0	0	0		ENST00000398316.7_1_13:49684467-49684536:+|nuORF	ENST00000398316.7_1_13:49684467-49684536:+|nuORF	ENST00000398316.7_1_13:49684467-49684536:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	607.3153076171875	2	606.852981	1211.69141	-1.1596	-0.00070368	-2.5835	-0.0015678	-3.7431	-0.0022715	606.851495119599	107.49	0.51638	105.61	105.22	105.74	-1.8785					17	9	3	0	0	0	0.025332	1	9813	9813		41.427	3.6151	1	32847			11479	11369	9422	9433	12484	12484					0.09403133608293501
FLFSNLPRL	9	Unmodified	_FLFSNLPRL_					0	0	0		nc|ENSG00000089472|Q9BQS7-3|HEPH;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-4|HEPH	nc|ENSG00000089472|Q9BQS7-3|HEPH	nc|ENSG00000089472|Q9BQS7-3|HEPH	MULTI-MSMS	OvCa99_classI_Rep5	1	553.8231201171875	2	553.821484	1105.62842	2.0006	0.001108	-0.13371	-7.405E-05	1.8669	0.0010339	553.8214293187982	134.12	0.75276	134.12	133.72	134.47	0					35	15	4	0	0	0	0.2077	1	15597	15597		75.043	20.267	1	508490			11480	14913	9423	9434	12485	12485					0.07982612610931028
FLFTAAIIKF	10	Unmodified	_FLFTAAIIKF_					0	0	0			REV__nc|ENSG00000067064|Q13907|IDI1	REV__nc|ENSG00000067064|Q13907|IDI1	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.8145141601562	2	585.84971	1169.68487	0.73801	0.00043237	3.8248	0.0022408	4.5628	0.0026731	585.851733155828	131.74	0.883	131.74	131.43	132.32	0					38	18	4	0	0	0	0.026915	1	15309	15309		35.618	11.416	1	251760	+		11481	16828	9424	9435	12486	12486					0.10681240447593154
FLFTDLIVCTT	11	Unmodified	_FLFTDLIVCTT_					0	0	0		ENSG00000110237|ENST00000263674|ARHGEF17;ARHGEF17|p.G1624Rfs*4|1|0.4|ENSG00000110237|chr11:73362607-73362608|-/A|frameshift_variant	ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	MULTI-MSMS	OvCa9_classI_Rep2	2	636.8311767578125	2	636.830857	1271.64716	-1.7858	-0.0011373	2.6567	0.0016918	0.87081	0.00055456	636.8324728974585	33.272	1.1921	30.562	30.321	31.513	-2.7097					69	23	4	0	0	0	0.69735	1	1181	1181		14.865	0	1	314610			11482	110	9425	9436	12487	12487					0.022203613998044602
FLFTGDYKT	9	Unmodified	_FLFTGDYKT_					0	0	0		chr3:127592954-127594800|409|18.67|0.67|4.81|-|1|TE_info:MER48,MER48_dup37,ERV1,LTR,acceptor,-,127592685,127592954|None,TPRA1|1	chr3:127592954-127594800|409|18.67|0.67|4.81|-|1|TE_info:MER48,MER48_dup37,ERV1,LTR,acceptor,-,127592685,127592954|None,TPRA1|1	chr3:127592954-127594800|409|18.67|0.67|4.81|-|1|TE_info:MER48,MER48_dup37,ERV1,LTR,acceptor,-,127592685,127592954|None,TPRA1|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.3155517578125	2	546.274032	1090.53351	1.5394	0.00084092	2.7719	0.0015142	4.3112	0.0023551	546.274991377738	135.5	0.42258	135.5	135.27	135.69	0					12	8	2	0	0	0	0.027462	1	15764	15764		26.693	0	1	24771			11483	469	9426	9437	12488	12488					-0.008133656509016873
FLFVFAAL	8	Unmodified	_FLFVFAAL_					0	0	0		GABRG3|p.S452Vfs*6|1|0.11|ENSG00000182256|chr15:27532829-27532830|-/A|frameshift_variant;ENSG00000182256|ENST00000615808|GABRG3	GABRG3|p.S452Vfs*6|1|0.11|ENSG00000182256|chr15:27532829-27532830|-/A|frameshift_variant	GABRG3|p.S452Vfs*6|1|0.11|ENSG00000182256|chr15:27532829-27532830|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	464.2717590332031	2	464.270564	926.526576	-0.77313	-0.00035894	3.9626	0.0018397	3.1895	0.0014808	464.2722437694747	32.813	1.0946	30.104	29.877	30.972	-2.7097					56	21	4	0	0	0	0.69862	2	1131	1131;1137		43.626	0	1	453740			11484	7986	9427	9438	12489;12490	12489					0.060373662591814536
FLFVPKTPK	9	Unmodified	_FLFVPKTPK_					0	0	0		ENST00000305883.5_1_2:10193335-10193581:+|nuORF	ENST00000305883.5_1_2:10193335-10193581:+|nuORF	ENST00000305883.5_1_2:10193335-10193581:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.8270263671875	2	538.828778	1075.643	-1.3695	-0.0007379	-3.2224	-0.0017363	-4.5918	-0.0024742	538.8270006767474	93.446	2.9138	90.938	90.614	93.527	-2.5072					151	59	5	0	0	0	0.42576	1	8180	8180		49.536	0.094497	1	3549600			11485	10239	9428	9439	12491	12491					0.10820684759073629
FLFVTQALLV	10	Unmodified	_FLFVTQALLV_					0	0	0			REV__ENST00000572438.1_1_17:4802033-4804946:-|nuORF	REV__ENST00000572438.1_1_17:4802033-4804946:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8436889648438	2	575.847167	1149.67978	-2.8608	-0.0016474	-4.0802	-0.0023496	-6.941	-0.0039969	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.59703	1	14780	14780		42.396	8.2236	1	356230	+		11486	17895	9429	9440	12492	12492					0.11092936584987001
FLFYIYSMI	9	Unmodified	_FLFYIYSMI_					0	0	0			REV__ENSG00000279012|ENST00000624187|OR51B2	REV__ENSG00000279012|ENST00000624187|OR51B2	MULTI-SECPEP	OvCa99_classI_Rep5	1	599.3317260742188	2	598.806654	1195.59875	0.067506	4.0423E-05	-4.1794	-0.0025027	-4.1119	-0.0024622	599.3058027989193	101.81	0.17473	101.81	101.73	101.91	0					5	3	2	0	0	0	0.027462	1	11340	11340		47.916	8.6628	1	80309	+		11487	23650	9430	9441	12493	12493					0.00877912550572546
FLFYSLISGII	11	Unmodified	_FLFYSLISGII_					0	0	0			REV__ENSG00000145246|ENST00000273859|ATP10D	REV__ENSG00000145246|ENST00000273859|ATP10D	MULTI-MSMS	OvCa9_classI_Rep4_	4	424.9143371582031	3	424.912797	1271.71656	0.28943	0.00012298	2.2347	0.00094954	2.5241	0.0010725	424.91372798493006	64.335	1.4091	60.86	60.539	61.948	-3.475					93	28	6	0	0	0	0.62497	1	4570	4570		29.551	0	1	1005400	+		11488	19957	9431	9442	12494	12494					0.09157188410904382
FLGAFCPLGI	10	Unmodified	_FLGAFCPLGI_					0	0	0			REV__tr|A0A7D6VQM6|A0A7D6VQM6_9CLOTPolysaccharidebiosynthesisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21740PE=4SV=1	REV__tr|A0A7D6VQM6|A0A7D6VQM6_9CLOTPolysaccharidebiosynthesisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21740PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.8226928710938	2	519.278063	1036.54157	1.5144	0.00078642	-1.8606	-0.00096615	-0.34611	-0.00017973	519.2769118130882	137.9	1.1664	136.37	136.07	137.24	-1.5284					34	26	2	0	0	0	0.027007	1	13379	13379		19.36	0	1	17420	+		11489	31338	9432	9443	12495	12495					0.024764900648506227
FLGAGFLPW	9	Unmodified	_FLGAGFLPW_					0	0	0		ENST00000273062.6_1_2:219269262-219269553:+|nuORF	ENST00000273062.6_1_2:219269262-219269553:+|nuORF	ENST00000273062.6_1_2:219269262-219269553:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.2938232421875	2	504.271096	1006.52764	0.19365	9.765E-05	-3.3761	-0.0017025	-3.1825	-0.0016048	504.77111435154455	105.49	0.56883	105.49	105.18	105.75	0					21	12	2	0	0	0	0.027462	1	11819	11819		29.842	23.106	1	447090			11490	10005	9433	9444	12496	12496					0.024635806280798533
FLGAGFLPW	9	Unmodified	_FLGAGFLPW_					0	0	0		ENST00000273062.6_1_2:219269262-219269553:+|nuORF	ENST00000273062.6_1_2:219269262-219269553:+|nuORF	ENST00000273062.6_1_2:219269262-219269553:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	504.271096	1006.52764	-0.0058157	-2.9327E-06	-9.5598	-0.0048207	-9.5656	-0.0048237	504.2651106037005	106.65	1.4528	105.39	104.75	106.2	-1.267	-0.0686	-0.0039588	NaN	49.211	52	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127300			11491	10005	9433	9444							0.024635806280798533
FLGAGFLPW	9	Unmodified	_FLGAGFLPW_					0	0	0		ENST00000273062.6_1_2:219269262-219269553:+|nuORF	ENST00000273062.6_1_2:219269262-219269553:+|nuORF	ENST00000273062.6_1_2:219269262-219269553:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	504.271096	1006.52764	-2.1254	-0.0010718	-8.6844	-0.0043793	-10.81	-0.0054511	504.2663286190658	107.37	1.2541	105.49	104.96	106.21	-1.8785	0.037941	-0.0030759	NaN	49.211	60	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171200			11492	10005	9433	9444							0.024635806280798533
FLGDAMIKLN	10	Unmodified	_FLGDAMIKLN_					0	0	0			REV__ENSG00000102452|ENST00000251127|NALCN	REV__ENSG00000102452|ENST00000251127|NALCN	MULTI-SECPEP	OvCa9_classI_Rep2	2	560.8295288085938	2	561.30481	1120.59507	-0.58492	-0.00032832	-1.9987	-0.0011219	-2.5836	-0.0014502	561.303498379291	116.95	0.88956	116.82	116.47	117.36	-0.12868					23	17	2	0	0	0	0.026734	1	11227	11227		47.657	15.702	1	16441	+		11493	17557	9434	9445	12497	12497					0.039592427767274785
FLGDATKQVV	10	Unmodified	_FLGDATKQVV_					0	0	0			REV__tr|A0A553SHU5|A0A553SHU5_NIACIPTSsugartransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_13640PE=4SV=1	REV__tr|A0A553SHU5|A0A553SHU5_NIACIPTSsugartransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_13640PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	539.2999267578125	2	539.300581	1076.58661	-0.16294	-8.7871E-05	0.35945	0.00019385	0.19652	0.00010598	539.3007694289824	111.12	1.0001	109.52	109.23	110.23	-1.6011					42	18	3	0	0	0	0.6349	1	10234	10234		37.812	1.3648	1	173020	+		11494	29841	9435	9446	12498	12498					0.05138012131760661
FLGEKIASV	9	Unmodified	_FLGEKIASV_					0	0	0		nc|ENSG00000151327|Q8N128|FAM177A1;ENSG00000151327|ENST00000280987|FAM177A1	nc|ENSG00000151327|Q8N128|FAM177A1	nc|ENSG00000151327|Q8N128|FAM177A1	MULTI-MSMS	OvCa99_classI_Rep5	1	482.2806091308594	2	482.279118	962.543683	2.8526	0.0013758	-0.49504	-0.00023875	2.3576	0.001137	482.2787176117157	90.123	0.92534	90.123	89.891	90.816	0					52	22	4	0	0	0	0.024645	2	9643	9643;9673		141.52	42.145	1	5374600			11495	5546	9436	9447	12499;12500	12499					0.06091242074330694
FLGENISNFL	10	Unmodified	_FLGENISNFL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OvCa99_classI_Rep5	1	577.2996826171875	2	577.298039	1152.58152	0.67429	0.00038927	1.6591	0.00095779	2.3334	0.0013471	577.2985886158132	153.8	3.8009	153.8	153.4	157.2	0					185	75	4	0	0	0	7.2523E-08	3	18033	18010;18033;18058		228.31	97.276	1	5848200			11496	2048	9437	9448	12501;12502;12503	12502					0.011337082691625255
FLGENISNFL	10	Unmodified	_FLGENISNFL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	577.2984008789062	2	577.298039	1152.58152	-4.016	-0.0023184	3.4464	0.0019896	-0.56958	-0.00032882	577.2997647971449	152.27	1.3348	150.84	150.5	151.83	-1.435					39	28	2	0	0	0	0.50999	2	15066	15055;15066		52.937	8.5595	1	34792			11497	2048	9437	9448	12504;12505	12505					0.011337082691625255
FLGIGKQQIL	10	Unmodified	_FLGIGKQQIL_					0	0	0		tr|A0A553SGW9|A0A553SGW9_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_11720PE=3SV=1	tr|A0A553SGW9|A0A553SGW9_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_11720PE=3SV=1	tr|A0A553SGW9|A0A553SGW9_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_11720PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.8177490234375	2	558.842416	1115.67028	2.4951	0.0013944	-1.8213	-0.0010178	0.67384	0.00037657	558.841740138539	136.83	0.67233	136.83	136.58	137.26	0					20	13	2	0	0	0	0.026939	1	15925	15925		40.573	33.837	1	46684			11498	33203	9438	9449	12506	12506					0.1170716829947196
FLGIHVFLV	9	Unmodified	_FLGIHVFLV_					0	0	0		nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000463900.5_1_2:74756150-74756756:-|nuORF;AUP1|p.F145Lfs*16|1|0.09|ENSG00000115307|chr2:74528841-74528842|AA/-|frameshift_variant;ENST00000472800.1_1_2:74756265-74756756:-|nuORF	nc|ENSG00000115307|Q9Y679-3|AUP1	nc|ENSG00000115307|Q9Y679-3|AUP1	MULTI-MSMS	OvCa99_classI_Rep5	1	522.8159790039062	2	522.81567	1043.61679	1.0757	0.00056241	0.89705	0.00046899	1.9728	0.0010314	522.8158663067574	147.88	1.2687	147.88	147.55	148.82	0					44	24	3	0	0	0	0.42921	2	17301	17301;17324		49.211	13.593	1	140200			11499	3084	9439	9450	12507;12508	12507					0.0967241558760179
FLGIIFGAISI	11	Unmodified	_FLGIIFGAISI_					0	0	0		tr|A0A7D6VRE4|A0A7D6VRE4_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01310PE=4SV=1	tr|A0A7D6VRE4|A0A7D6VRE4_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01310PE=4SV=1	tr|A0A7D6VRE4|A0A7D6VRE4_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01310PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8494262695312	2	575.847167	1149.67978	0.92745	0.00053407	4.0292	0.0023202	4.9566	0.0028543	575.8495520130135	87.768	2.7108	86.336	85.642	88.353	-1.4311					213	54	6	0	0	0	0.1439	1	7765	7765		87.754	13.499	1	8722300			11500	34922	9440	9451	12509	12509					0.11092936585009738
FLGIIGINSC	10	Unmodified	_FLGIIGINSC_					0	0	0		tr|A0A7D6ZX94|A0A7D6ZX94_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12455PE=4SV=1	tr|A0A7D6ZX94|A0A7D6ZX94_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12455PE=4SV=1	tr|A0A7D6ZX94|A0A7D6ZX94_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12455PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	518.7802124023438	2	518.778428	1035.5423	1.0108	0.00052437	2.3681	0.0012285	3.3789	0.0017529	518.7794953787475	41.419	1.2817	38.709	38.438	39.72	-2.7097					65	25	4	0	0	0	0.56767	1	2183	2183		45.952	7.1458	1	331240			11501	35868	9441	9452	12510	12510					0.02595284713925139
FLGIRSQPFL	10	Unmodified	_FLGIRSQPFL_					0	0	0			REV__ENSG00000203663|ENST00000641771|OR2L2	REV__ENSG00000203663|ENST00000641771|OR2L2	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.2754516601562	2	589.340041	1176.66553	0.87832	0.00051763	4.4176	0.0026035	5.296	0.0031211	589.342247101042	153.54	1.2256	153.54	153	154.22	0					33	24	2	0	0	0	0.026493	1	18016	18016		53.089	0	1	52051	+		11502	23105	9442	9453	12511	12511					0.0842628415668969
FLGKRRLY	8	Unmodified	_FLGKRRLY_					0	0	0			REV__ENSG00000155530|ENST00000285928|LRGUK	REV__ENSG00000155530|ENST00000285928|LRGUK	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.8250732421875	2	526.821818	1051.62908	-1.8501	-0.0009747	-1.7879	-0.00094188	-3.638	-0.0019166	526.8208664685411	73.055	1.5015	69.659	69.009	70.511	-3.3961					81	30	3	0	0	0	0.028476	1	5594	5594		20.482	0	1	378000	+		11503	20428	9443	9454	12512	12512					0.10533452050663072
FLGLARFGAFL	11	Unmodified	_FLGLARFGAFL_					0	0	0			REV__ENSG00000134987|ENST00000513710|WDR36	REV__ENSG00000134987|ENST00000513710|WDR36	MULTI-MSMS	OvCa9_classI_Rep4_	4	404.57098388671875	3	404.569365	1210.68626	0.11746	4.7522E-05	2.3537	0.00095222	2.4711	0.00099975	404.5702897954673	50.253	1.4365	47.112	46.82	48.256	-3.1416					73	27	4	0	0	0	0.69099	1	2879	2879		32.751	0	1	331320	+		11504	19245	9444	9455	12513	12513					0.08934874536384996
FLGLQQLRAE	10	Unmodified	_FLGLQQLRAE_					0	0	0			REV__nc|ENSG00000169241|Q9BRV3-2|SLC50A1	REV__nc|ENSG00000169241|Q9BRV3-2|SLC50A1	MULTI-MSMS	OvCa99_classI_Rep5	1	587.8370971679688	2	587.83258	1173.65061	1.295	0.00076125	4.3632	0.0025648	5.6582	0.0033261	587.835135304692	147.13	0.73401	147.13	146.82	147.55	0					31	14	3	0	0	0	0.45953	1	17202	17202		59.931	1.1488	1	219220	+		11505	21448	9445	9456	12514	12514					0.0707279228868174
FLGLQQLRAE	10	Unmodified	_FLGLQQLRAE_					0	0	0			REV__nc|ENSG00000169241|Q9BRV3-2|SLC50A1	REV__nc|ENSG00000169241|Q9BRV3-2|SLC50A1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	587.83258	1173.65061	1.295	0.00076125	4.3632	0.0025648	5.6582	0.0033261	587.835135304692	147.13	0.73401	147.13	146.82	147.55	0	0	0	NaN	59.931	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219220	+		11506	21448	9445	9456							0.0707279228868174
FLGRTLPQL	9	Unmodified	_FLGRTLPQL_					0	0	0			REV__nc|ENSG00000182362|P58557-4|YBEY	REV__nc|ENSG00000182362|P58557-4|YBEY	MULTI-MSMS	OvCa9_classI_Rep2	2	522.8114013671875	2	522.813659	1043.61277	-1.291	-0.00067494	2.4009	0.0012552	1.1099	0.00058029	522.814957070394	118.97	0.69121	118.82	118.58	119.27	-0.14755					29	13	3	0	0	0	0.40667	1	11431	11431		51.335	3.6781	1	61398	+		11507	22288	9446	9457	12515	12515					0.09270326093906078
FLGVKAQRER	10	Unmodified	_FLGVKAQRER_					0	0	0		tr|A0A7D6VR18|A0A7D6VR18_9CLOTPyruvate:ferredoxinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=nifJPE=3SV=1	tr|A0A7D6VR18|A0A7D6VR18_9CLOTPyruvate:ferredoxinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=nifJPE=3SV=1	tr|A0A7D6VR18|A0A7D6VR18_9CLOTPyruvate:ferredoxinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=nifJPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	602.3514404296875	2	602.351471	1202.68839	-0.9294	-0.00055983	0.5233	0.00031521	-0.4061	-0.00024462	602.3516657974924	44.06	0.74417	44.06	43.651	44.396	0					31	16	3	0	0	0	0.42082	1	2950	2950		65.465	1.2581	1	1237300			11508	34885	9447	9458	12516	12516					0.09515303274179132
FLGYALVIF	9	Unmodified	_FLGYALVIF_					0	0	0		INSRR|p.A1268Gfs*13|1|0.08|ENSG00000027644|chr1:156840964-156840965|-/C|frameshift_variant;ENSG00000027644|ENST00000368195|INSRR	INSRR|p.A1268Gfs*13|1|0.08|ENSG00000027644|chr1:156840964-156840965|-/C|frameshift_variant	INSRR|p.A1268Gfs*13|1|0.08|ENSG00000027644|chr1:156840964-156840965|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.79736328125	2	521.802229	1041.5899	-2.5661	-0.001339	-2.4379	-0.0012721	-5.004	-0.0026111	521.8006681074736	125.81	1.1354	124.4	123.83	124.97	-1.4143					49	22	3	0	0	0	0.42921	1	11995	11995		49.211	3.2588	1	210200			11509	1054	9448	9459	12517	12517					0.07077306976407272
FLHAGLPILV	10	Unmodified	_FLHAGLPILV_					0	0	0			REV__nc|ENSG00000137185|O15535-2|ZSCAN9	REV__nc|ENSG00000137185|O15535-2|ZSCAN9	MULTI-MSMS	OvCa9_classI_Rep2	2	540.333740234375	2	540.334227	1078.6539	0.19064	0.00010301	-0.21146	-0.00011426	-0.020819	-1.1249E-05	540.3339476899532	130.28	2.8117	130.05	129.46	132.28	-0.22696					132	56	4	0	0	0	0.32406	1	12783	12783		77.944	1.0972	1	240030	+		11510	28876	9449	9460	12518	12518					0.11772087133385867
FLHCSTVIPV	10	Unmodified	_FLHCSTVIPV_					0	0	0		ENSG00000151881|ENST00000397080|TMEM267;ENST00000511525.1_1_5:43446326-43483989:-|nuORF	ENSG00000151881|ENST00000397080|TMEM267	ENSG00000151881|ENST00000397080|TMEM267	MULTI-MSMS	OvCa9_classI_Rep2	2	558.2997436523438	2	558.299527	1114.5845	0.64738	0.00036143	-0.61251	-0.00034196	0.034869	1.9467E-05	558.29900042177	109.51	1.3356	109.34	109.12	110.45	-0.17237					56	26	3	0	0	0	0.58282	1	10308	10308		44.117	1.7207	1	142080			11511	5589	9450	9461	12519	12519					0.031792601223060046
FLHFLPSL	8	Unmodified	_FLHFLPSL_					0	0	0		ENST00000463608.5_1_22:21830433-21838406:-|nuORF;ENSG00000196664|ENST00000380659|TLR7	ENST00000463608.5_1_22:21830433-21838406:-|nuORF	ENST00000463608.5_1_22:21830433-21838406:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.7906494140625	2	487.278921	972.543289	0.58126	0.00028324	3.164	0.0015417	3.7452	0.001825	487.27960721446266	90.011	0.75893	87.436	87.248	88.007	-2.575					26	14	3	0	0	0	0.028476	1	7770	7770		52.299	24.417	1	73553			11512	12230	9451	9462	12520	12520					0.0559186714514226
FLHKFAAH	8	Unmodified	_FLHKFAAH_					0	0	0			REV__SVA_B_dup173|chr4:48185818-48187447:+|1.7426897649738875|0.0421009603888101|5.37|413.0|50|2|anti-sense	REV__SVA_B_dup173|chr4:48185818-48187447:+|1.7426897649738875|0.0421009603888101|5.37|413.0|50|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.30462646484375	2	485.766512	969.518471	0.67813	0.00032941	2.8712	0.0013948	3.5494	0.0017242	485.7678911874797	127.27	1.7179	126.2	125.18	126.9	-1.0715					42	32	2	0	0	0	0.028476	1	9868	9868		46.766	9.6073	1	25806	+		11513	29469	9452	9463	12521	12521					0.03249232062410101
FLHKVKSI	8	Unmodified	_FLHKVKSI_					0	0	0		METTL13|p.Q599H|1|0.05|ENSG00000010165|chr1:171794499-171794499|G/T|missense_variant	METTL13|p.Q599H|1|0.05|ENSG00000010165|chr1:171794499-171794499|G/T|missense_variant	METTL13|p.Q599H|1|0.05|ENSG00000010165|chr1:171794499-171794499|G/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.3045654296875	2	486.30547	970.596387	-1.8727	-0.00091069	1.17	0.00056898	-0.70267	-0.00034171	486.3060163931478	126.56	4.5912	125.14	124.48	129.07	-1.4143					192	91	5	0	0	0	0.73288	1	12136	12136		35.201	1.6851	1	3302400			11514	14837	9453	9464	12522	12522					0.10991244927799926
FLHMLMKL	8	Oxidation (M)	_FLHM(Oxidation (M))LMKL_		FLHM(1)LMKL		FLHM(39)LM(-39)KL	0	0	1		SCGN|p.I145Ffs*16|1|0.05|ENSG00000079689|chr6:25670037-25670038|-/TTTTGTGT|frameshift_variant;ENSG00000079689|ENST00000377961|SCGN	SCGN|p.I145Ffs*16|1|0.05|ENSG00000079689|chr6:25670037-25670038|-/TTTTGTGT|frameshift_variant	SCGN|p.I145Ffs*16|1|0.05|ENSG00000079689|chr6:25670037-25670038|-/TTTTGTGT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.784912109375	2	524.787741	1047.56093	-0.69324	-0.0003638	3.0827	0.0016178	2.3894	0.0012539	524.7892195240744	105.64	1.467	103.62	103.25	104.72	-2.0161					67	28	4	0	0	0	0.57589	1	9594	9594		69.093	8.121	2	332350			11515	1618	9454	9465	12523	12523		61			0.03905123084132356
FLHMLMKL	8	Oxidation (M)	_FLHM(Oxidation (M))LMKL_					0	0	1		SCGN|p.I145Ffs*16|1|0.05|ENSG00000079689|chr6:25670037-25670038|-/TTTTGTGT|frameshift_variant;ENSG00000079689|ENST00000377961|SCGN	SCGN|p.I145Ffs*16|1|0.05|ENSG00000079689|chr6:25670037-25670038|-/TTTTGTGT|frameshift_variant	SCGN|p.I145Ffs*16|1|0.05|ENSG00000079689|chr6:25670037-25670038|-/TTTTGTGT|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	524.787741	1047.56093	-0.6072	-0.00031865	3.2247	0.0016923	2.6175	0.0013736	524.7891855804882	104.24	1.3354	103.67	103.32	104.66	-0.57639	0.037705	0.00024161	NaN	69.093	63	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	282390			11516	1618	9454	9465				61			0.03905123084132356
FLHMLMKL	8	Oxidation (M)	_FLHM(Oxidation (M))LMKL_					0	0	1		SCGN|p.I145Ffs*16|1|0.05|ENSG00000079689|chr6:25670037-25670038|-/TTTTGTGT|frameshift_variant;ENSG00000079689|ENST00000377961|SCGN	SCGN|p.I145Ffs*16|1|0.05|ENSG00000079689|chr6:25670037-25670038|-/TTTTGTGT|frameshift_variant	SCGN|p.I145Ffs*16|1|0.05|ENSG00000079689|chr6:25670037-25670038|-/TTTTGTGT|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	524.787741	1047.56093	-0.019555	-1.0262E-05	2.5119	0.0013182	2.4923	0.0013079	524.7889598695997	104.94	1.247	103.59	103.26	104.51	-1.3482	-0.033781	-0.00050658	NaN	69.093	51	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	313430			11517	1618	9454	9465				61			0.03905123084132356
FLHPRGRFQ	9	Unmodified	_FLHPRGRFQ_					0	0	0		ENST00000464332.5_1_8:144657010-144658430:-|nuORF	ENST00000464332.5_1_8:144657010-144658430:-|nuORF	ENST00000464332.5_1_8:144657010-144658430:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	579.3218383789062	2	579.319974	1156.6254	2.6185	0.0015169	2.358	0.001366	4.9765	0.002883	579.3212562959395	26.202	0.67894	23.493	23.343	24.022	-2.7097					37	15	3	0	0	0	0.67509	1	348	348		23.042	0	1	118080			11518	12248	9455	9466	12524	12524					0.05334782276804617
FLHSLPYID	9	Unmodified	_FLHSLPYID_					0	0	0		ENSG00000214654|ENST00000689072|B3GALT9	ENSG00000214654|ENST00000689072|B3GALT9	ENSG00000214654|ENST00000689072|B3GALT9	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.8170166015625	2	552.78985	1103.56515	-2.0861	-0.0011532	-1.6674	-0.00092171	-3.7535	-0.0020749	552.7890745463073	103.75	0.46508	103.75	103.64	104.11	0					12	10	2	0	0	0	0.027462	1	11628	11628		29.15	4.6304	1	92471			11519	9176	9456	9467	12525	12525					0.017506271030242715
FLHTGLSNSL	10	Unmodified	_FLHTGLSNSL_					0	0	0			REV__chr13:43055543-43068930|206|12.42|0.22|5.85|+|1|TE_info:LTR19C,LTR19C_dup94,ERV1,LTR,donor,+,43054751,43055543|None,DNAJC15|15	REV__chr13:43055543-43068930|206|12.42|0.22|5.85|+|1|TE_info:LTR19C,LTR19C_dup94,ERV1,LTR,donor,+,43054751,43055543|None,DNAJC15|15	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.7879638671875	2	544.790381	1087.56621	-0.88381	-0.00048149	0.24155	0.0001316	-0.64226	-0.0003499	544.7903920824408	79.571	1.2068	76.82	76.562	77.769	-2.7514					60	24	3	0	0	0	0.1722	1	6472	6472		98.629	2.5958	1	819980	+		11520	15899	9457	9468	12526	12526					0.025928414719373905
FLHVGWKSH	9	Unmodified	_FLHVGWKSH_					0	0	0			REV__sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1	REV__sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.8600463867188	2	555.795801	1109.57705	2.2054	0.0012257	-0.83959	-0.00046664	1.3658	0.0007591	555.7951453110891	85.518	0.45249	85.518	85.252	85.705	0					26	10	3	0	0	0	0.027462	1	8981	8981		35.618	0	1	1360600	+		11521	29432	9458	9469	12527	12527					0.026642886369018015
FLIAEKVSL	9	Unmodified	_FLIAEKVSL_					0	0	0		ENST00000465475.5_1_3:124802831-124839525:-|nuORF;nc|ENSG00000221955|A0AV02-4|SLC12A8;ENST00000479352.5_1_3:124802736-124844777:-|nuORF;nc|ENSG00000221955|A0AV02-3|SLC12A8;ENST00000473262.5_1_3:124802736-124896678:-|nuORF;ENSG00000221955|ENST00000469902|SLC12A8;nc|ENSG00000221955|A0AV02-2|SLC12A8	ENST00000465475.5_1_3:124802831-124839525:-|nuORF	ENST00000465475.5_1_3:124802831-124839525:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	510.31060791015625	2	510.310418	1018.60628	1.3878	0.0007082	0.90972	0.00046424	2.2975	0.0011724	510.31066211842017	111.68	1.1881	111.68	111.33	112.52	0					57	25	4	0	0	0	0.075543	1	12691	12691		104.06	26.739	1	793180			11522	9239	9459	9470	12528	12528					0.09772388142516775
FLIAGCLCSLI	11	Unmodified	_FLIAGCLCSLI_					0	0	0		tr|A0A7D6ZY73|A0A7D6ZY73_9CLOTSignalpeptidaseIIOS=ClostridiumintestinaleOX=36845GN=HZF06_01025PE=4SV=1	tr|A0A7D6ZY73|A0A7D6ZY73_9CLOTSignalpeptidaseIIOS=ClostridiumintestinaleOX=36845GN=HZF06_01025PE=4SV=1	tr|A0A7D6ZY73|A0A7D6ZY73_9CLOTSignalpeptidaseIIOS=ClostridiumintestinaleOX=36845GN=HZF06_01025PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	576.812255859375	2	576.811413	1151.60827	1.4312	0.00082555	1.0436	0.00060195	2.4748	0.0014275	576.8116878772435	107.17	0.84266	107.17	106.93	107.77	0					36	19	3	0	0	0	0.067687	1	12074	12074		104.75	11.551	1	1743900			11523	35910	9460	9471	12529	12529					0.03853357564457838
FLIAGCLCSLI	11	Unmodified	_FLIAGCLCSLI_					0	0	0		tr|A0A7D6ZY73|A0A7D6ZY73_9CLOTSignalpeptidaseIIOS=ClostridiumintestinaleOX=36845GN=HZF06_01025PE=4SV=1	tr|A0A7D6ZY73|A0A7D6ZY73_9CLOTSignalpeptidaseIIOS=ClostridiumintestinaleOX=36845GN=HZF06_01025PE=4SV=1	tr|A0A7D6ZY73|A0A7D6ZY73_9CLOTSignalpeptidaseIIOS=ClostridiumintestinaleOX=36845GN=HZF06_01025PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	576.811413	1151.60827	-0.52668	-0.0003038	1.198	0.000691	0.67129	0.00038721	576.8120646730532	107.73	0.47796	107.42	107.17	107.64	-0.30836	0.12668	0.00015439	NaN	104.75	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18419			11524	35910	9460	9471							0.03853357564457838
FLIANRYYKV	10	Unmodified	_FLIANRYYKV_					0	0	0		SLC22A15|p.S108Y|1|0.15|ENSG00000163393|chr1:116019604-116019604|C/A|missense_variant	SLC22A15|p.S108Y|1|0.15|ENSG00000163393|chr1:116019604-116019604|C/A|missense_variant	SLC22A15|p.S108Y|1|0.15|ENSG00000163393|chr1:116019604-116019604|C/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	429.7642517089844	3	429.580041	1285.71829	0.10602	4.5545E-05	-4.4203	-0.0018989	-4.3143	-0.0018533	429.57810971782385	102.53	0.62517	101.01	100.79	101.41	-1.5211					12	11	2	0	0	0	0.027001	1	7045	7045		28.081	5.5199	1	5092.1			11525	32821	9461	9472	12530	12530					0.08686242219482665
FLICTSLLGI	10	Unmodified	_FLICTSLLGI_					0	0	0			REV__tr|A0A553SRK7|A0A553SRK7_NIACISigmafactorregulatorC-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01280PE=4SV=1	REV__tr|A0A553SRK7|A0A553SRK7_NIACISigmafactorregulatorC-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01280PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3097534179688	2	540.312103	1078.60965	-2.1488	-0.001161	-4.1878	-0.0022627	-6.3367	-0.0034238	540.3097600180628	118.45	2.7194	118.3	117.89	120.61	-0.14755					130	54	4	0	0	0	0.52321	1	11445	11445		51.335	1.8939	1	293380	+		11526	30741	9462	9473	12531	12531					0.07349314924863393
FLIDRSVLF	9	Unmodified	_FLIDRSVLF_					0	0	0			REV__ENST00000377091.6_1_10:21827773-21845868:+|nuORF	REV__ENST00000377091.6_1_10:21827773-21845868:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.3212280273438	2	555.321317	1108.62808	-0.14709	-8.1684E-05	-1.7341	-0.000963	-1.8812	-0.0010447	555.319699208598	121.15	1.0763	119.8	119.54	120.62	-1.3479					34	20	2	0	0	0	0.48324	1	11417	11417		44.117	1.6423	1	79454	+		11527	25112	9463	9474	12532	12532					0.07811192891063001
FLIEKEEQI	9	Unmodified	_FLIEKEEQI_					0	0	0			REV__tr|A0A7D6ZQ70|A0A7D6ZQ70_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23185PE=4SV=1	REV__tr|A0A7D6ZQ70|A0A7D6ZQ70_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23185PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	574.8132934570312	2	574.813522	1147.61249	-0.59301	-0.00034087	-2.2381	-0.0012865	-2.8311	-0.0016273	574.8120673921536	48.622	0.73876	48.622	48.292	49.031	0					45	16	4	0	0	0	0.1804	1	3566	3566		79.713	4.6693	1	1629400	+		11528	32144	9464	9475	12533	12533					0.044588615833845324
FLIFHLLAF	9	Unmodified	_FLIFHLLAF_					0	0	0		tr|A0A553SKG4|A0A553SKG4_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_18625PE=4SV=1	tr|A0A553SKG4|A0A553SKG4_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_18625PE=4SV=1	tr|A0A553SKG4|A0A553SKG4_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_18625PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.8294067382812	2	560.83132	1119.64809	-0.041817	-2.3452E-05	-3.6051	-0.0020218	-3.6469	-0.0020453	560.8291900234686	118.51	1.7224	117.16	116.73	118.46	-1.3444					71	32	4	0	0	0	0.22187	1	11110	11110		72.62	9.3137	1	180450			11529	33614	9465	9476	12534	12534					0.09304988621715893
FLIFRSIIVP	10	Unmodified	_FLIFRSIIVP_					0	0	0		tr|A0A553SMI3|A0A553SMI3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_22595PE=4SV=1	tr|A0A553SMI3|A0A553SMI3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_22595PE=4SV=1	tr|A0A553SMI3|A0A553SMI3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_22595PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	602.8740844726562	2	602.876259	1203.73797	0.39799	0.00023994	-4.3085	-0.0025975	-3.9105	-0.0023575	602.8736249948932	105.04	1.9216	103.03	102.69	104.61	-2.0161					116	37	5	0	0	0	0.5675	1	9545	9545		45.972	5.1941	1	1590400			11530	33837	9466	9477	12535	12535					0.14424618230259512
FLIGTVVSSL	10	Unmodified	_FLIGTVVSSL_					0	0	0			REV__tr|A0A7D6VR25|A0A7D6VR25_9CLOTRnfABCDGEtypeelectrontransportcomplexsubunitDOS=ClostridiumintestinaleOX=36845GN=HZF06_03765PE=4SV=1	REV__tr|A0A7D6VR25|A0A7D6VR25_9CLOTRnfABCDGEtypeelectrontransportcomplexsubunitDOS=ClostridiumintestinaleOX=36845GN=HZF06_03765PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	518.314453125	2	518.307875	1034.6012	1.4152	0.00073351	0.080059	4.1495E-05	1.4953	0.00077501	518.3077734354781	126	0.56187	126	125.71	126.28	0					21	11	2	0	0	0	0.59703	1	14549	14549		42.396	4.5846	1	186350	+		11531	31381	9467	9478	12536	12536					0.08528084279919312
FLIHLFQF	8	Unmodified	_FLIHLFQF_					0	0	0		ENST00000524399.1_1_12:122999608-122999680:-|nuORF	ENST00000524399.1_1_12:122999608-122999680:-|nuORF	ENST00000524399.1_1_12:122999608-122999680:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	532.7969970703125	2	532.80002	1063.58549	-1.4512	-0.00077319	-2.4542	-0.0013076	-3.9054	-0.0020808	532.7984173853858	115.26	1.5315	115.14	114.5	116.03	-0.11777					69	30	4	0	0	0	0.69415	1	10990	10990		44.531	3.9584	1	214400			11532	13167	9468	9479	12537	12537					0.05623842553518443
FLIIWFSN	8	Unmodified	_FLIIWFSN_					0	0	0			REV__tr|A0A553SFV8|A0A553SFV8_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09605PE=4SV=1	REV__tr|A0A553SFV8|A0A553SFV8_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09605PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.3019409179688	2	520.284203	1038.55385	1.8927	0.00098473	-2.7184	-0.0014143	-0.82573	-0.00042961	520.2826872721163	90.502	0.8986	89.2	88.83	89.728	-1.302					31	17	2	0	0	0	0.028476	1	7961	7961		44.117	9.9443	1	75652	+		11533	29629	9469	9480	12538	12538					0.036118497995630605
FLIKNKAL	8	Unmodified	_FLIKNKAL_					0	0	0		tr|A0A7D6VRJ1|A0A7D6VRJ1_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_07135PE=4SV=1	tr|A0A7D6VRJ1|A0A7D6VRJ1_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_07135PE=4SV=1	tr|A0A7D6VRJ1|A0A7D6VRJ1_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_07135PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.2825927734375	2	473.807845	945.601138	-1.7539	-0.00083103	1.2742	0.00060375	-0.4797	-0.00022729	473.80840558865873	126.3	0.53793	124.89	124.68	125.22	-1.4143					15	10	2	0	0	0	0.028476	1	12014	12014		42.474	0	1	9893.4			11534	34937	9470	9481	12539	12539					0.12616129070545412
FLIKQQCKI	9	Unmodified	_FLIKQQCKI_					0	0	0		ANKRD7|p.E80K|1|0.08|ENSG00000106013|chr7:118234489-118234489|G/A|missense_variant	ANKRD7|p.E80K|1|0.08|ENSG00000106013|chr7:118234489-118234489|G/A|missense_variant	ANKRD7|p.E80K|1|0.08|ENSG00000106013|chr7:118234489-118234489|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	560.8297119140625	2	560.830995	1119.64744	-0.50151	-0.00028126	-2.9885	-0.0016761	-3.49	-0.0019573	560.8292303204496	118.3	2.0812	117.27	116.79	118.87	-1.0324					75	41	3	0	0	0	0.21395	2	8930	8930;8936		73.975	5.49	1	154380			11535	95	9471	9482	12540;12541	12540					0.09239825910344734
FLIKQQCKI	9	Unmodified	_FLIKQQCKI_					0	0	0		ANKRD7|p.E80K|1|0.08|ENSG00000106013|chr7:118234489-118234489|G/A|missense_variant	ANKRD7|p.E80K|1|0.08|ENSG00000106013|chr7:118234489-118234489|G/A|missense_variant	ANKRD7|p.E80K|1|0.08|ENSG00000106013|chr7:118234489-118234489|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.8286743164062	2	560.830995	1119.64744	-0.041817	-2.3452E-05	-3.0239	-0.0016959	-3.0657	-0.0017193	560.8291900234686	118.51	1.7224	117.16	116.73	118.46	-1.3444					71	32	4	0	0	0	0.36502	1	11124	11124		55.504	5.4797	1	180450			11536	95	9471	9482	12542	12542					0.09239825910344734
FLIKVQMSK	9	Unmodified	_FLIKVQMSK_					0	0	0			REV__ENST00000523968.1_1_8:29043965-29102869:-|nuORF	REV__ENST00000523968.1_1_8:29043965-29102869:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	547.326904296875	2	547.325545	1092.63654	-0.1345	-7.3618E-05	2.9942	0.0016388	2.8597	0.0015652	547.3271925205654	93.792	1.8234	92.692	92.225	94.048	-1.0995					97	35	4	0	0	0	0.14998	1	8383	8383		84.916	26.134	1	1121100	+		11537	27096	9472	9483	12543	12543					0.09392423536064598
FLIKVQMSK	9	Unmodified	_FLIKVQMSK_					0	0	0			REV__ENST00000523968.1_1_8:29043965-29102869:-|nuORF	REV__ENST00000523968.1_1_8:29043965-29102869:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.3283081054688	2	547.325545	1092.63654	-1.4276	-0.00078134	4.2654	0.0023345	2.8378	0.0015532	547.3278680090106	95.35	1.9184	92.881	92.31	94.229	-2.4685					103	37	4	0	0	0	0.18193	1	8399	8399		79.451	5.196	1	1430500	+		11538	27096	9472	9483	12544	12544					0.09392423536064598
FLILTWLQ	8	Unmodified	_FLILTWLQ_					0	0	0		chr14:21231072-21269298|118|19.49|0.12|7.4|-|0|HNRNPC,HNRNPC|1	chr14:21231072-21269298|118|19.49|0.12|7.4|-|0|HNRNPC,HNRNPC|1	chr14:21231072-21269298|118|19.49|0.12|7.4|-|0|HNRNPC,HNRNPC|1	MULTI-MSMS	OvCa99_classI_Rep5	1	517.3094482421875	2	517.307678	1032.6008	1.5369	0.00079505	4.0484	0.0020943	5.5853	0.0028893	517.3096358267778	128.03	1.59	128.03	127.72	129.31	0					63	33	2	0	0	0	0.57878	1	14828	14828		68.485	5.5063	1	150760			11539	343	9473	9484	12545	12545					0.08580709350690086
FLINKTSNEDI	11	Unmodified	_FLINKTSNEDI_					0	0	0			REV__tr|A0A7D6ZEZ6|A0A7D6ZEZ6_9CLOTGer(X)CfamilysporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15795PE=3SV=1	REV__tr|A0A7D6ZEZ6|A0A7D6ZEZ6_9CLOTGer(X)CfamilysporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15795PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	647.339599609375	2	647.337892	1292.66123	2.3809	0.0015412	-0.55881	-0.00036174	1.8221	0.0011795	647.3374815809303	137.25	0.81393	137.25	136.97	137.78	0					44	16	4	0	0	0	0.28332	1	16001	16001		69.628	2.134	1	567530	+		11540	31955	9474	9485	12546	12546					0.026607301524791183
FLINPQGTIQ	10	Unmodified	_FLINPQGTIQ_					0	0	0			REV__ENSG00000146411|ENST00000275230|SLC2A12	REV__ENSG00000146411|ENST00000275230|SLC2A12	MULTI-MSMS	OvCa99_classI_Rep5	1	565.81787109375	2	565.813856	1129.61316	1.2567	0.00071105	4.4053	0.0024926	5.662	0.0032036	565.8162335369739	154.05	1.0949	154.05	153.78	154.88	0					45	21	3	0	0	0	0.49558	1	18041	18041		54.776	1.4249	1	208820	+		11541	20016	9475	9486	12547	12547					0.05353701023113899
FLIPDQPII	9	Unmodified	_FLIPDQPII_					0	0	0			REV__ENSG00000108846|ENST00000285238|ABCC3;REV__ENSG00000023839|ENST00000647814|ABCC2;REV__ENSG00000091262|ENST00000205557|ABCC6	REV__ENSG00000023839|ENST00000647814|ABCC2	MULTI-MSMS	OvCa99_classI_Rep5	1	528.30908203125	2	528.310418	1054.60628	2.5062	0.001324	-2.6771	-0.0014143	-0.17093	-9.0305E-05	528.308738306785	94.213	0.72575	94.213	93.964	94.69	0					46	16	4	0	0	0	0.10363	1	10258	10258		96.19	5.8206	1	5715700	+		11542	16561;17908;17247	9476	9487	12548	12548					0.08116388142502728
FLIQHLPLV	9	Unmodified	_FLIQHLPLV_					0	0	0		chr3:177053918-177197121|145|16.23|0.1|7.36|-|0|TBL1XR1,TBL1XR1|1;ENST00000430069.5_1_3:176771676-176782752:-|nuORF;ENST00000424913.5_1_3:176771673-176816307:-|nuORF	chr3:177053918-177197121|145|16.23|0.1|7.36|-|0|TBL1XR1,TBL1XR1|1	chr3:177053918-177197121|145|16.23|0.1|7.36|-|0|TBL1XR1,TBL1XR1|1	MULTI-MSMS	OvCa99_classI_Rep5	1	540.3358154296875	2	540.334227	1078.6539	1.2796	0.00069143	0.3128	0.00016902	1.5924	0.00086044	540.3343358581989	130.98	2.9694	130.98	130.29	133.26	0					166	62	5	0	0	0	0.064607	5	15195	15174;15195;15219;15243;15268		110.34	33.491	1	5224400			11543	479	9477	9488	12549;12550;12551;12552;12553	12550					0.1177208713336313
FLIQHLPLV	9	Unmodified	_FLIQHLPLV_					0	0	0		chr3:177053918-177197121|145|16.23|0.1|7.36|-|0|TBL1XR1,TBL1XR1|1;ENST00000430069.5_1_3:176771676-176782752:-|nuORF;ENST00000424913.5_1_3:176771673-176816307:-|nuORF	chr3:177053918-177197121|145|16.23|0.1|7.36|-|0|TBL1XR1,TBL1XR1|1	chr3:177053918-177197121|145|16.23|0.1|7.36|-|0|TBL1XR1,TBL1XR1|1	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3342895507812	2	540.334227	1078.6539	0.19064	0.00010301	-0.21146	-0.00011426	-0.020819	-1.1249E-05	540.3339476899532	130.28	2.8117	130.05	129.46	132.28	-0.22696					132	56	4	0	0	0	0.13154	13	12808	12769;12778;12789;12795;12808;12814;12826;12832;12839;12845;12851;12856;12871		88.643	25.231	1	240030			11544	479	9477	9488	12554;12555;12556;12557;12558;12559;12560;12561;12562;12563;12564;12565;12566	12558					0.1177208713336313
FLIQHLPLV	9	Unmodified	_FLIQHLPLV_					0	0	0		chr3:177053918-177197121|145|16.23|0.1|7.36|-|0|TBL1XR1,TBL1XR1|1;ENST00000430069.5_1_3:176771676-176782752:-|nuORF;ENST00000424913.5_1_3:176771673-176816307:-|nuORF	chr3:177053918-177197121|145|16.23|0.1|7.36|-|0|TBL1XR1,TBL1XR1|1	chr3:177053918-177197121|145|16.23|0.1|7.36|-|0|TBL1XR1,TBL1XR1|1	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3341674804688	2	540.334227	1078.6539	0.71527	0.00038649	-0.87238	-0.00047138	-0.15711	-8.4892E-05	540.3335173912039	131.44	2.5576	130.32	129.91	132.47	-1.1249					119	51	4	0	0	0	0.13154	12	10454	10441;10446;10450;10454;10460;10466;10472;10478;10484;10490;10511;10518		88.643	38.618	1	239410			11545	479	9477	9488	12567;12568;12569;12570;12571;12572;12573;12574;12575;12576;12577;12578	12570					0.1177208713336313
FLIQHLPLV	9	Unmodified	_FLIQHLPLV_					0	0	0		chr3:177053918-177197121|145|16.23|0.1|7.36|-|0|TBL1XR1,TBL1XR1|1;ENST00000430069.5_1_3:176771676-176782752:-|nuORF;ENST00000424913.5_1_3:176771673-176816307:-|nuORF	chr3:177053918-177197121|145|16.23|0.1|7.36|-|0|TBL1XR1,TBL1XR1|1	chr3:177053918-177197121|145|16.23|0.1|7.36|-|0|TBL1XR1,TBL1XR1|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.333251953125	2	540.334227	1078.6539	3.3207	0.0017943	-3.4279	-0.0018522	-0.10719	-5.7918E-05	540.3322174762676	131.73	3.1393	130.23	129.77	132.91	-1.5015					134	63	4	0	0	0	0.098892	7	12661	12640;12651;12661;12672;12698;12746;12759		97.473	22.84	1	310750			11546	479	9477	9488	12579;12580;12581;12582;12583;12584;12585	12581					0.1177208713336313
FLIQQKLVEA	10	Unmodified	_FLIQQKLVEA_					0	0	0		nc|ENSG00000114541|Q9Y2L6-2|FRMD4B;ENSG00000114541|ENST00000398540|FRMD4B	nc|ENSG00000114541|Q9Y2L6-2|FRMD4B	nc|ENSG00000114541|Q9Y2L6-2|FRMD4B	MULTI-MSMS	OvCa99_classI_Rep5	1	594.8547973632812	2	594.852981	1187.69141	2.1977	0.0013073	-0.14045	-8.3546E-05	2.0573	0.0012238	594.852792212693	100.14	1.0831	100.14	99.856	100.94	0					77	25	5	0	0	0	0.17251	1	11138	11138		98.582	12.72	1	9126100			11547	3026	9478	9489	12586	12586					0.1050713360834834
FLIRDKAIY	9	Unmodified	_FLIRDKAIY_					0	0	0		ENSG00000176925|ENST00000322110|OR51F2;nc|ENSG00000176925|Q8NH61|OR51F2	ENSG00000176925|ENST00000322110|OR51F2	ENSG00000176925|ENST00000322110|OR51F2	MULTI-MSMS	OvCa9_classI_Rep2	2	569.8334350585938	2	569.834591	1137.65463	-0.84571	-0.00048192	-0.21981	-0.00012526	-1.0655	-0.00060717	569.8345191856214	98.031	6.1334	97.138	96.776	102.91	-0.89305					325	123	5	0	0	0	0.21395	1	8950	8950		73.975	2.679	1	9613600			11548	7639	9479	9490	12587	12587					0.09130881782425604
FLIRESETL	9	Unmodified	_FLIRESETL_					0	0	0		nc|ENSG00000254087|P07948-2|LYN;ENSG00000254087|ENST00000519728|LYN	nc|ENSG00000254087|P07948-2|LYN	nc|ENSG00000254087|P07948-2|LYN	MULTI-MSMS	OvCa99_classI_Rep5	1	554.3067016601562	2	554.305864	1106.59717	1.5107	0.0008374	0.89753	0.00049751	2.4083	0.0013349	554.306197176907	93.43	1.2117	93.43	93.136	94.348	0					80	28	4	0	0	0	0.1944	1	10159	10159		77.318	9.8239	1	6993500			11549	9442	9480	9491	12588	12588					0.04813994786195508
FLIRESETL	9	Unmodified	_FLIRESETL_					0	0	0		nc|ENSG00000254087|P07948-2|LYN;ENSG00000254087|ENST00000519728|LYN	nc|ENSG00000254087|P07948-2|LYN	nc|ENSG00000254087|P07948-2|LYN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	554.305864	1106.59717	0.33871	0.00018775	-0.92839	-0.00051461	-0.58968	-0.00032686	554.3052472899702	94.681	2.0832	93.582	92.958	95.041	-1.0995	-0.046464	-0.0010436	NaN	77.318	91	41	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225080			11550	9442	9480	9491							0.04813994786195508
FLIRESETL	9	Unmodified	_FLIRESETL_					0	0	0		nc|ENSG00000254087|P07948-2|LYN;ENSG00000254087|ENST00000519728|LYN	nc|ENSG00000254087|P07948-2|LYN	nc|ENSG00000254087|P07948-2|LYN	MULTI-MATCH	OvCa9_classI_Rep3	3		2	554.305864	1106.59717	-1.1573	-0.0006415	0.70734	0.00039208	-0.44997	-0.00024942	554.3061501563612	95.575	2.4655	93.733	92.918	95.384	-1.841	0.10544	0.00076979	NaN	77.318	113	48	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	326610			11551	9442	9480	9491							0.04813994786195508
FLIRESETL	9	Unmodified	_FLIRESETL_					0	0	0		nc|ENSG00000254087|P07948-2|LYN;ENSG00000254087|ENST00000519728|LYN	nc|ENSG00000254087|P07948-2|LYN	nc|ENSG00000254087|P07948-2|LYN	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	554.305864	1106.59717	0.37531	0.00020804	-0.83063	-0.00046042	-0.45532	-0.00025238	554.3052220938224	96.193	2.0659	93.767	93.204	95.27	-2.4256	0.13921	-0.00093522	NaN	77.318	96	40	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279180			11552	9442	9480	9491							0.04813994786195508
FLISCMSDV	9	Carbamidomethyl (C)	_FLISC(Carbamidomethyl (C))MSDV_	FLISC(1)MSDV		FLISC(56)MSDV		0	1	0		tr|A0A553SU40|A0A553SU40_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_06200PE=4SV=1	tr|A0A553SU40|A0A553SU40_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_06200PE=4SV=1	tr|A0A553SU40|A0A553SU40_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_06200PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	536.2450561523438	2	536.246103	1070.47765	-0.69524	-0.00037282	0.15637	8.3852E-05	-0.53888	-0.00028897	536.246148469639	113.89	3.7057	113.77	113.37	117.07	-0.11777					126	74	2	0	0	0	0.36502	1	10839	10839		55.504	9.5523	1	608760			11553	34566	9481	9492	12589	12589	385				-0.05476658154384495
FLISRSDQL	9	Unmodified	_FLISRSDQL_					0	0	0			REV__ENST00000483450.1_1_6:28962780-28967471:-|nuORF	REV__ENST00000483450.1_1_6:28962780-28967471:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	539.7984008789062	2	539.798206	1077.58186	2.042	0.0011022	-0.78561	-0.00042407	1.2563	0.00067817	539.7978845429078	82.84	0.89805	82.84	82.437	83.335	0					48	18	3	0	0	0	0.1804	1	8636	8636		79.713	2.866	1	57672000	+		11554	26526	9482	9493	12590	12590					0.0461712798901317
FLITILDHL	9	Unmodified	_FLITILDHL_					0	0	0		ENSG00000063601|ENST00000445323|MTMR1;nc|ENSG00000063601|Q13613|MTMR1;nc|ENSG00000063601|Q13613-2|MTMR1;nc|ENSG00000087053|Q13614-2|MTMR2;ENSG00000087053|ENST00000346299|MTMR2	ENSG00000063601|ENST00000445323|MTMR1;nc|ENSG00000087053|Q13614-2|MTMR2	ENSG00000063601|ENST00000445323|MTMR1	MULTI-MSMS	OvCa99_classI_Rep5	1	542.8251342773438	2	542.823692	1083.63283	1.0823	0.00058752	-0.93153	-0.00050565	0.15081	8.1864E-05	542.8231339249934	150.31	1.611	150.31	149.94	151.55	0					69	31	3	0	0	0	0.079296	2	17587	17587;17611		102.77	30.896	1	312990			11555	1290;1759	9483	9494	12591;12592	12591					0.09436077033842594
FLITQLKML	9	Unmodified	_FLITQLKML_					0	0	0		ENSG00000228253|ENST00000361851|MT-ATP8	ENSG00000228253|ENST00000361851|MT-ATP8	ENSG00000228253|ENST00000361851|MT-ATP8	MULTI-MSMS	OvCa99_classI_Rep5	1	553.8377685546875	2	553.835746	1105.65694	1.1948	0.00066174	0.9038	0.00050056	2.0986	0.0011623	553.836019361132	132.77	0.61755	132.77	132.51	133.13	0					32	12	4	0	0	0	0.14855	1	15432	15432		85.161	18.732	1	371390			11556	9279	9484	9495	12593	12593					0.10833594195855767
FLKALPIPL	9	Unmodified	_FLKALPIPL_					0	0	0		ENSG00000124203|ENST00000371030|ZNF831	ENSG00000124203|ENST00000371030|ZNF831	ENSG00000124203|ENST00000371030|ZNF831	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.30950927734375	2	506.333696	1010.65284	1.5195	0.00076938	-3.9721	-0.0020112	-2.4526	-0.0012418	506.83338864309184	138.41	0.2421	138.41	138.26	138.5	0					6	4	2	0	0	0	0.027462	1	16140	16140		7.1934	0	1	9684.9			11557	3632	9485	9496	12594	12594					0.14793872764460048
FLKASLHHHIS	11	Unmodified	_FLKASLHHHIS_					0	0	0		ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	431.5677490234375	3	430.57529	1288.70404	0.30376	0.00013079	-4.3665	-0.0018801	-4.0627	-0.0017493	430.57333107908045	74.222	0.32811	70.991	70.816	71.144	-3.2308					9	6	2	0	0	0	0.025864	1	5794	5794		22.562	0	1	23210			11558	3568	9486	9497	12595	12595					0.07123589791217455
FLKDLVASV	9	Unmodified	_FLKDLVASV_					0	0	0		ENST00000530791.5_1_11:65687742-65688356:+|nuORF;ENSG00000175550|ENST00000312515|DRAP1;nc|ENSG00000175550|Q14919-2|DRAP1	ENST00000530791.5_1_11:65687742-65688356:+|nuORF	ENST00000530791.5_1_11:65687742-65688356:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	496.2957763671875	2	496.294768	990.574983	1.7251	0.00085615	0.049466	2.455E-05	1.7745	0.0008807	496.2945768386209	108.66	1.087	108.66	108.24	109.33	0					49	24	4	0	0	0	0.1804	1	12288	12288		79.713	18.741	1	1114200			11559	7552	9487	9498	12596	12596					0.07931815108429419
FLKDSLQPHSI	11	Unmodified	_FLKDSLQPHSI_					0	0	0			REV__ENSG00000163239|ENST00000368482|TDRD10	REV__ENSG00000163239|ENST00000368482|TDRD10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	643.3748779296875	2	642.85097	1283.68739	-0.47932	-0.00030813	2.9691	0.0019087	2.4898	0.0016006	642.852802683065	92.514	0.95959	89.972	89.669	90.628	-2.5425					36	18	3	0	0	0	0.025277	1	8023	8023		32.751	0	1	65496	+		11560	20820	9488	9499	12597	12597					0.056890441146151716
FLKEIKELTG	10	Unmodified	_FLKEIKELTG_					0	0	0		tr|A0A553SRR3|A0A553SRR3_NIACIIS110familytransposaseOS=NialliacirculansOX=1397GN=CEQ21_01655PE=4SV=1	tr|A0A553SRR3|A0A553SRR3_NIACIIS110familytransposaseOS=NialliacirculansOX=1397GN=CEQ21_01655PE=4SV=1	tr|A0A553SRR3|A0A553SRR3_NIACIIS110familytransposaseOS=NialliacirculansOX=1397GN=CEQ21_01655PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3427734375	2	589.344989	1176.67542	-5.1334	-0.0030254	1.6192	0.00095427	-3.5142	-0.0020711	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.74374	2	12582	12522;12582		25.574	2.3258	1	589610			11561	34288	9489	9500	12598;12599	12599					0.09415427371413898
FLKEQQKPN	9	Unmodified	_FLKEQQKPN_					0	0	0			REV__nc|ENSG00000152229|Q9H939-2|PSTPIP2	REV__nc|ENSG00000152229|Q9H939-2|PSTPIP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.3129272460938	2	566.31148	1130.60841	-0.13049	-7.3899E-05	-0.23943	-0.00013559	-0.36992	-0.00020949	566.3112007083625	106.59	1.2951	104.68	104.41	105.71	-1.9115					55	21	3	0	0	0	0.50149	1	9710	9710		42.396	0	1	326300	+		11562	20276	9490	9501	12600	12600					0.04832816880343671
FLKGFFVSL	9	Unmodified	_FLKGFFVSL_					0	0	0		chr6:109250991-109254448|247|18.56|0.13|7.16|+|1|TE_info:L1PA2,L1PA2_dup2028,L1,LINE,donor,-,109245219,109250991|None,CCDC162P|62;L1PA2_dup1619|chr5:71851116-71854174:+|2.376726425342643|0.0208621851436049|6.83|429.0|126|1|anti-sense	chr6:109250991-109254448|247|18.56|0.13|7.16|+|1|TE_info:L1PA2,L1PA2_dup2028,L1,LINE,donor,-,109245219,109250991|None,CCDC162P|62	chr6:109250991-109254448|247|18.56|0.13|7.16|+|1|TE_info:L1PA2,L1PA2_dup2028,L1,LINE,donor,-,109245219,109250991|None,CCDC162P|62	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.3046875	2	529.307678	1056.6008	-1.0307	-0.00054553	-3.3964	-0.0017977	-4.427	-0.0023433	529.305915411379	105.23	2.8607	103.22	102.74	105.6	-2.0161					96	55	4	0	0	0	0.22961	1	9580	9580		71.296	5.8303	1	1348100			11563	506	9491	9502	12601	12601					0.07476709350703459
FLKGNIDR	8	Unmodified	_FLKGNIDR_					0	0	0			REV__ENSG00000134200|ENST00000256592|TSHB	REV__ENSG00000134200|ENST00000256592|TSHB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.740234375	2	481.774534	961.534515	-0.20664	-9.9554E-05	1.7534	0.00084473	1.5467	0.00074518	481.775147028978	105.71	0.39949	103.7	103.5	103.9	-2.0161					10	7	2	0	0	0	0.028476	1	9586	9586		24.203	10.427	1	15954	+		11564	19180	9492	9503	12602	12602					0.05220893508658264
FLKGNIDR	8	Unmodified	_FLKGNIDR_					0	0	0			REV__ENSG00000134200|ENST00000256592|TSHB	REV__ENSG00000134200|ENST00000256592|TSHB	MULTI-MATCH	OvCa9_classI_Rep3	3		2	481.774534	961.534515	0.45247	0.00021799	0.042111	2.0288E-05	0.49458	0.00023828	481.77495723283226	105.02	0.46959	103.67	103.52	103.99	-1.3482	-0.014153	-0.00063299	NaN	24.203	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13263	+		11565	19180	9492	9503							0.05220893508658264
FLKHIRLI	8	Unmodified	_FLKHIRLI_					0	0	0		ENST00000496418.5_1_3:132361537-132378459:-|nuORF	ENST00000496418.5_1_3:132361537-132378459:-|nuORF	ENST00000496418.5_1_3:132361537-132378459:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3404541015625	2	520.342387	1038.67022	-0.11114	-5.783E-05	-4.0332	-0.0020986	-4.1443	-0.0021565	520.3401542748645	39.812	1.4362	37.102	36.805	38.241	-2.7097					67	28	4	0	0	0	0.75991	1	1953	1953		21.702	1.2205	1	306910			11566	12787	9493	9504	12603	12603					0.15243213090116114
FLKKCEKIL	9	Unmodified	_FLKKCEKIL_					0	0	0			REV__tr|A0A553SHW1|A0A553SHW1_NIACIFAD-bindingoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_13725PE=4SV=1	REV__tr|A0A553SHW1|A0A553SHW1_NIACIFAD-bindingoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_13725PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.343994140625	2	561.341195	1120.66784	0.052099	2.9245E-05	4.3992	0.0024695	4.4513	0.0024987	561.3439589556538	51.824	0.75462	51.824	51.504	52.259	0					36	17	3	0	0	0	0.027462	1	4043	4043		31.955	0	1	471080	+		11567	29844	9494	9505	12604	12604					0.11232996570151954
FLKKHPKDL	9	Unmodified	_FLKKHPKDL_					0	0	0		ENSG00000181215|ENST00000531445|C4orf50	ENSG00000181215|ENST00000531445|C4orf50	ENSG00000181215|ENST00000531445|C4orf50	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.8106689453125	2	563.342584	1124.67061	2.949	0.0016613	0.088072	4.9615E-05	3.0371	0.0017109	563.3426612686881	106.41	0.48328	106.41	106.1	106.58	0					18	10	2	0	0	0	0.027462	1	11935	11935		15.642	4.1308	1	282270			11568	7922	9495	9506	12605	12605					0.11326588019323935
FLKKVVSELD	10	Unmodified	_FLKKVVSELD_					0	0	0			REV__ENSG00000203668|ENST00000366553|CHML	REV__ENSG00000203668|ENST00000366553|CHML	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.7587890625	2	589.344989	1176.67542	2.6872	0.0015837	4.424	0.0026073	7.1112	0.0041909	589.3477183587978	86.423	0.40584	86.423	86.231	86.637	0					15	6	3	0	0	0	0.026551	1	9109	9109		69.628	25.25	1	635960	+		11569	15790	9496	9507	12606	12606					0.09415427371436635
FLKLAREQ	8	Unmodified	_FLKLAREQ_					0	0	0			REV__ENST00000554930.5_1_14:37667225-37854725:+|nuORF	REV__ENST00000554930.5_1_14:37667225-37854725:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	502.7999267578125	2	502.798009	1003.58147	0.036558	1.8381E-05	-0.33363	-0.00016775	-0.29707	-0.00014937	502.7975493146649	103.43	0.66994	103.43	103.18	103.85	0					31	15	3	0	0	0	0.36941	1	11568	11568		94.006	6.31	1	1007900	+		11570	27537	9497	9508	12607	12607					0.07981753059800667
FLKLAREQ	8	Unmodified	_FLKLAREQ_					0	0	0			REV__ENST00000554930.5_1_14:37667225-37854725:+|nuORF	REV__ENST00000554930.5_1_14:37667225-37854725:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	502.798009	1003.58147	0.036558	1.8381E-05	-0.33363	-0.00016775	-0.29707	-0.00014937	502.7975493146649	103.43	0.66994	103.43	103.18	103.85	0	0	0	NaN	94.006	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1007900	+		11571	27537	9497	9508							0.07981753059800667
FLKLKKLVFK	10	Unmodified	_FLKLKKLVFK_					0	0	0			REV__ENST00000587994.5_1_18:47322196-47323846:-|nuORF	REV__ENST00000587994.5_1_18:47322196-47323846:-|nuORF	MSMS	OvCa9_classI_Rep3	3	632.4323120117188	2	632.431202	1262.84785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	164.5	1	163.09	162.59	163.59	-1.4083								0	0	0	0.24301	1	14349	14349		6.7355	3.3255	1		+		11572	27882	9498	9509	12608	12608					0.226940435694587
FLKLKKLVFK	10	Unmodified	_FLKLKKLVFK_					0	0	0			REV__ENST00000587994.5_1_18:47322196-47323846:-|nuORF	REV__ENST00000587994.5_1_18:47322196-47323846:-|nuORF	MSMS	OvCa9_classI_Rep3	3	632.4314575195312	2	632.431202	1262.84785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	164.58	1	163.17	162.67	163.67	-1.4083								0	0	0	0.29476	1	14357	14357		3.41	0.25078	1		+		11573	27882	9498	9509	12609	12609					0.226940435694587
FLKLKKLVFK	10	Unmodified	_FLKLKKLVFK_					0	0	0			REV__ENST00000587994.5_1_18:47322196-47323846:-|nuORF	REV__ENST00000587994.5_1_18:47322196-47323846:-|nuORF	MSMS	OvCa9_classI_Rep3	3	632.430419921875	2	632.431202	1262.84785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	164.62	1	163.21	162.71	163.71	-1.4083								0	0	0	0.29476	1	14361	14361		3.41	0.25078	1		+		11574	27882	9498	9509	12610	12610					0.226940435694587
FLKLLVYAGIG	11	Unmodified	_FLKLLVYAGIG_					0	0	0			REV__tr|A0A7D6VY24|A0A7D6VY24_9CLOT2-keto-3-deoxygluconatepermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17805PE=3SV=1	REV__tr|A0A7D6VY24|A0A7D6VY24_9CLOT2-keto-3-deoxygluconatepermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17805PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	597.2611694335938	2	597.368267	1192.72198	-5.4427	-0.0032513	-1.2123	-0.00072417	-6.655	-0.0039755	597.3673713205438	159.35	0.30478	159.12	158.95	159.25	-0.22697					8	5	2	0	0	0	0.026056	1	16176	16176		20.947	3.582	1	10095	+		11575	31805	9499	9510	12611	12611					0.13332911993370544
FLKLMSKKSA	10	Unmodified	_FLKLMSKKSA_					0	0	0		ENST00000529239.1_1_8:61851661-61851937:-|nuORF	ENST00000529239.1_1_8:61851661-61851937:-|nuORF	ENST00000529239.1_1_8:61851661-61851937:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	576.8460083007812	2	576.844102	1151.67365	-1	-0.00057685	4.1848	0.002414	3.1848	0.0018371	576.8465039370298	59.087	1.4948	56.307	55.838	57.333	-2.7801					87	28	4	0	0	0	0.60504	1	4285	4285		41.427	0.64845	1	457970			11576	13271	9500	9511	12612	12612					0.10388095081816573
FLKMATKKL	9	Unmodified	_FLKMATKKL_					0	0	0			REV__nc|ENSG00000184675|Q5JTC6-2|AMER1	REV__nc|ENSG00000184675|Q5JTC6-2|AMER1	MULTI-MSMS	OvCa99_classI_Rep5	1	540.33349609375	2	540.335913	1078.65727	1.2796	0.00069143	-2.8064	-0.0015164	-1.5268	-0.00082497	540.3343358581989	130.98	2.9694	130.98	130.29	133.26	0					166	62	5	0	0	0	0.44568	1	15324	15324		47.657	0.8909	1	5224400	+		11577	15629	9501	9512	12613	12613					0.1210901391571042
FLKQYGEKI	9	Unmodified	_FLKQYGEKI_					0	0	0		tr|A0A553SF71|A0A553SF71_NIACIFructosaminedeglycaseOS=NialliacirculansOX=1397GN=CEQ21_08325PE=4SV=1	tr|A0A553SF71|A0A553SF71_NIACIFructosaminedeglycaseOS=NialliacirculansOX=1397GN=CEQ21_08325PE=4SV=1	tr|A0A553SF71|A0A553SF71_NIACIFructosaminedeglycaseOS=NialliacirculansOX=1397GN=CEQ21_08325PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.3256225585938	2	563.318774	1124.623	-3.5578	-0.0020042	3.5076	0.0019759	-0.050111	-2.8228E-05	563.320611230398	156.14	0.89035	154.65	154.42	155.31	-1.4911					60	28	3	0	0	0	0.63422	1	15476	15476		27.882	3.3631	1	86006			11578	32999	9502	9513	12614	12614					0.06566889028476908
FLKSKTIKN	9	Unmodified	_FLKSKTIKN_					0	0	0			REV__tr|A0A553STA8|A0A553STA8_NIACILactococcin972familybacteriocinOS=NialliacirculansOX=1397GN=CEQ21_04710PE=4SV=1	REV__tr|A0A553STA8|A0A553STA8_NIACILactococcin972familybacteriocinOS=NialliacirculansOX=1397GN=CEQ21_04710PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	539.831787109375	2	539.834591	1077.65463	-3.7173	-0.0020067	-0.65874	-0.00035561	-4.3761	-0.0023624	539.83416939196	149.54	1.4287	149.32	148.92	150.35	-0.22697					60	28	3	0	0	0	0.5811	1	15144	15144		34.173	0.65696	1	108190	+		11579	30939	9503	9514	12615	12615					0.11890881782437646
FLKSLIQD	8	Unmodified	_FLKSLIQD_					0	0	0		ENST00000564124.5_1_16:48580029-48653834:-|nuORF;ENSG00000102921|ENST00000262384|N4BP1	ENST00000564124.5_1_16:48580029-48653834:-|nuORF	ENST00000564124.5_1_16:48580029-48653834:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	481.28912353515625	2	482.279118	962.543683	-0.46964	-0.0002265	0.70975	0.0003423	0.24011	0.0001158	482.2793791420645	94.016	0.78293	92.917	92.382	93.165	-1.0995					23	14	2	0	0	0	0.028476	1	8364	8364		33.516	0	1	12900			11580	2269	9504	9515	12616	12616					0.06091242074330694
FLKSVYIPL	9	Unmodified	_FLKSVYIPL_					0	0	0			REV__tr|A0A553SR19|A0A553SR19_NIACIAspartateaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00200PE=3SV=1	REV__tr|A0A553SR19|A0A553SR19_NIACIAspartateaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00200PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.331298828125	2	540.328611	1078.64267	0.34656	0.00018726	2.5593	0.0013829	2.9059	0.0015701	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.46377	1	13899	13899		45.952	5.3793	1	342200	+		11581	30682	9505	9516	12617	12617					0.1064926503922834
FLKVMKPIM	9	Unmodified	_FLKVMKPIM_					0	0	0		tr|A0A553SPU1|A0A553SPU1_NIACIGlycosyltransferasefamily2proteinOS=NialliacirculansOX=1397GN=CEQ21_09850PE=4SV=1	tr|A0A553SPU1|A0A553SPU1_NIACIGlycosyltransferasefamily2proteinOS=NialliacirculansOX=1397GN=CEQ21_09850PE=4SV=1	tr|A0A553SPU1|A0A553SPU1_NIACIGlycosyltransferasefamily2proteinOS=NialliacirculansOX=1397GN=CEQ21_09850PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8314208984375	2	553.826866	1105.63918	1.4062	0.00077877	4.349	0.0024086	5.7551	0.0031873	553.8291816775361	139.45	3.0735	137.95	136.76	139.84	-1.4952					150	61	3	0	0	0	0.59983	1	13662	13662		31.955	11.008	1	110800			11582	34085	9506	9517	12618	12618					0.0905855566934406
FLKVNHTN	8	Unmodified	_FLKVNHTN_					0	0	0		tr|A0A553SSI8|A0A553SSI8_NIACIProteinNrdIOS=NialliacirculansOX=1397GN=nrdIPE=3SV=1	tr|A0A553SSI8|A0A553SSI8_NIACIProteinNrdIOS=NialliacirculansOX=1397GN=nrdIPE=3SV=1	tr|A0A553SSI8|A0A553SSI8_NIACIProteinNrdIOS=NialliacirculansOX=1397GN=nrdIPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.78485107421875	2	486.766709	971.518865	-2.2469	-0.0010937	-2.2622	-0.0011012	-4.509	-0.0021949	486.76551205920333	35.886	0.5466	33.176	33.001	33.548	-2.7097					16	10	2	0	0	0	0.028476	1	1482	1482		10.866	0	1	19388			11583	34379	9507	9518	12619	12619					0.03196606991605222
FLKVQPRPFL	10	Unmodified	_FLKVQPRPFL_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-MSMS	OvCa9_classI_Rep2	2	415.5874328613281	3	415.588648	1243.74411	-0.52837	-0.00021958	-2.9765	-0.001237	-3.5049	-0.0014566	415.5871992361253	53.239	1.788	50.425	50.084	51.872	-2.8139					82	35	4	0	0	0	0.48398	1	3599	3599		56.434	1.3499	1	237460	+		11584	17252	9508	9519	12620	12620					0.13199136461776106
FLKVYHNY	8	Unmodified	_FLKVYHNY_					0	0	0		ENSG00000258986|ENST00000556573|TMEM179	ENSG00000258986|ENST00000556573|TMEM179	ENSG00000258986|ENST00000556573|TMEM179	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.7557373046875	2	542.284734	1082.55492	0.05252	2.8481E-05	-0.34116	-0.000185	-0.28864	-0.00015652	542.284657423646	32.474	0.44478	32.474	32.303	32.748	0					11	8	2	0	0	0	0.028476	1	1409	1409		18.324	0	1	33015			11585	9486	9509	9520	12621	12621					0.016940641684641378
FLKYKEEV	8	Unmodified	_FLKYKEEV_					0	0	0			REV__ENSG00000077274|ENST00000324068|CAPN6	REV__ENSG00000077274|ENST00000324068|CAPN6	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.2871704101562	2	528.292225	1054.5699	-0.13238	-6.9937E-05	-3.3228	-0.0017554	-3.4552	-0.0018254	528.2902674817188	89.711	1.4107	87.136	86.801	88.212	-2.575					57	27	3	0	0	0	0.64026	1	7713	7713		55.504	2.5675	1	346080	+		11586	17009	9510	9521	12622	12622					0.044795112457904906
FLLAADFLK	9	Unmodified	_FLLAADFLK_					0	0	0		ENST00000468257.1_1_1:60381746-60392418:-|nuORF;ENST00000466095.5_1_1:60366713-60392418:-|nuORF;ENST00000469406.5_1_1:60370173-60392418:-|nuORF;ENSG00000134716|ENST00000371204|CYP2J2	ENST00000468257.1_1_1:60381746-60392418:-|nuORF	ENST00000468257.1_1_1:60381746-60392418:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.843017578125	2	519.305136	1036.59572	-0.941	-0.00048866	-1.3683	-0.00071057	-2.3093	-0.0011992	519.3036968695111	101.58	0.69281	100.81	100.37	101.06	-0.764					15	13	2	0	0	0	0.027411	1	9298	9298		54.776	0	1	11203			11587	4320	9511	9522	12623	12623					0.07888405488074568
FLLATQPLV	9	Unmodified	_FLLATQPLV_					0	0	0		ENSG00000181656|ENST00000315033|GPR88	ENSG00000181656|ENST00000315033|GPR88	ENSG00000181656|ENST00000315033|GPR88	MULTI-MSMS	OvCa9_classI_Rep2	2	501.3031311035156	2	501.305136	1000.59572	-0.60395	-0.00030276	-2.6332	-0.00132	-3.2371	-0.0016228	501.3036625968001	45.316	1.7944	42.606	42.199	43.993	-2.7097					88	35	4	0	0	0	0.48324	1	2632	2632		44.117	9.9443	1	439250			11588	7944	9512	9523	12624	12624					0.09544405488088614
FLLAVIFCL	9	Unmodified	_FLLAVIFCL_					0	0	0		ENSG00000119737|ENST00000394705|GPR75	ENSG00000119737|ENST00000394705|GPR75	ENSG00000119737|ENST00000394705|GPR75	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.8204345703125	2	519.806457	1037.59836	0.73893	0.0003841	-0.96629	-0.00050228	-0.22736	-0.00011818	520.3075701220268	132.28	0.14865	132.05	131.93	132.08	-0.22696					4	2	2	0	0	0	0.027462	1	13048	13048		21.702	0	1	12004			11589	3392	9513	9524	12625	12625					0.08106537621392818
FLLCPLALAS	10	Unmodified	_FLLCPLALAS_					0	0	0			REV__ENST00000576225.5_1_17:79058928-79084738:+|nuORF	REV__ENST00000576225.5_1_17:79058928-79084738:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.3056640625	2	524.298996	1046.58344	-1.4082	-0.0007383	-1.6723	-0.00087676	-3.0804	-0.0016151	524.2978615517587	118.63	1.0417	118.49	118.13	119.18	-0.14755					53	20	3	0	0	0	0.026822	1	11377	11377		38.806	25.847	1	120380	+		11590	27783	9514	9525	12626	12626					0.06201045753368817
FLLCWLPYN	9	Unmodified	_FLLCWLPYN_					0	0	0		ENSG00000163464|ENST00000295683|CXCR1;ENSG00000180871|ENST00000318507|CXCR2	ENSG00000163464|ENST00000295683|CXCR1	ENSG00000163464|ENST00000295683|CXCR1	MULTI-MSMS	OvCa99_classI_Rep5	1	584.7987670898438	2	584.79662	1167.57869	0.92074	0.00053844	3.8394	0.0022452	4.7601	0.0027837	584.7985340971206	142.99	1.9613	142.99	142.64	144.6	0					107	39	5	0	0	0	0.50066	1	16735	16735		42.474	1.9018	1	514620			11591	6309	9515	9526	12627	12627					0.0016016161064271728
FLLDGFPRTV	10	Unmodified	_FLLDGFPRTV_					0	0	0		nc|ENSG00000004455|P54819-6|AK2;nc|ENSG00000004455|P54819-5|AK2;nc|ENSG00000004455|P54819-2|AK2;ENSG00000004455|ENST00000672715|AK2;ENST00000469238.1_1_1:33480014-33487286:-|nuORF;nc|ENSG00000004455|P54819-4|AK2;ENST00000427762.1_1_1:59096724-59097153:-|nuORF;nc|ENSG00000004455|P54819-3|AK2;tr|A0A553SH84|A0A553SH84_NIACIAdenylatekinaseOS=NialliacirculansOX=1397GN=adkPE=3SV=1	nc|ENSG00000004455|P54819-6|AK2	nc|ENSG00000004455|P54819-6|AK2	MULTI-MSMS	OvCa99_classI_Rep5	1	582.8258666992188	2	582.824224	1163.63389	1.5475	0.00090195	1.1066	0.00064495	2.6541	0.0015469	582.8248487397215	128.32	1.9587	128.32	127.81	129.77	0					96	41	4	0	0	0	0.065922	1	14856	14856		123.21	27.018	1	1021600			11592	826	9516	9527	12628	12628					0.058622914027409934
FLLDGFPRTV	10	Unmodified	_FLLDGFPRTV_					0	0	0		nc|ENSG00000004455|P54819-6|AK2;nc|ENSG00000004455|P54819-5|AK2;nc|ENSG00000004455|P54819-2|AK2;ENSG00000004455|ENST00000672715|AK2;ENST00000469238.1_1_1:33480014-33487286:-|nuORF;nc|ENSG00000004455|P54819-4|AK2;ENST00000427762.1_1_1:59096724-59097153:-|nuORF;nc|ENSG00000004455|P54819-3|AK2;tr|A0A553SH84|A0A553SH84_NIACIAdenylatekinaseOS=NialliacirculansOX=1397GN=adkPE=3SV=1	nc|ENSG00000004455|P54819-6|AK2	nc|ENSG00000004455|P54819-6|AK2	MULTI-MSMS	OvCa9_classI_Rep4_	4	582.8242797851562	2	582.824224	1163.63389	-0.10876	-6.3388E-05	-0.015662	-9.1284E-06	-0.12442	-7.2516E-05	582.824142351319	128.78	0.93842	127.33	127	127.94	-1.4565					42	18	3	0	0	0	0.27679	1	12314	12314		83.647	17.218	1	53004			11593	826	9516	9527	12629	12629					0.058622914027409934
FLLDGFPRTV	10	Unmodified	_FLLDGFPRTV_					0	0	0		nc|ENSG00000004455|P54819-6|AK2;nc|ENSG00000004455|P54819-5|AK2;nc|ENSG00000004455|P54819-2|AK2;ENSG00000004455|ENST00000672715|AK2;ENST00000469238.1_1_1:33480014-33487286:-|nuORF;nc|ENSG00000004455|P54819-4|AK2;ENST00000427762.1_1_1:59096724-59097153:-|nuORF;nc|ENSG00000004455|P54819-3|AK2;tr|A0A553SH84|A0A553SH84_NIACIAdenylatekinaseOS=NialliacirculansOX=1397GN=adkPE=3SV=1	nc|ENSG00000004455|P54819-6|AK2	nc|ENSG00000004455|P54819-6|AK2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	582.824224	1163.63389	0.82038	0.00047814	-0.86902	-0.00050648	-0.048633	-2.8344E-05	582.8236166258874	127.57	0.88802	127.34	126.99	127.88	-0.23035	-0.023083	-0.00093497	NaN	83.647	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40974			11594	826	9516	9527							0.058622914027409934
FLLDGFPRTV	10	Unmodified	_FLLDGFPRTV_					0	0	0		nc|ENSG00000004455|P54819-6|AK2;nc|ENSG00000004455|P54819-5|AK2;nc|ENSG00000004455|P54819-2|AK2;ENSG00000004455|ENST00000672715|AK2;ENST00000469238.1_1_1:33480014-33487286:-|nuORF;nc|ENSG00000004455|P54819-4|AK2;ENST00000427762.1_1_1:59096724-59097153:-|nuORF;nc|ENSG00000004455|P54819-3|AK2;tr|A0A553SH84|A0A553SH84_NIACIAdenylatekinaseOS=NialliacirculansOX=1397GN=adkPE=3SV=1	nc|ENSG00000004455|P54819-6|AK2	nc|ENSG00000004455|P54819-6|AK2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	582.824224	1163.63389	-0.36901	-0.00021507	0.53512	0.00031188	0.1661	9.6809E-05	582.8243167219657	128.52	0.78908	127.43	127.17	127.96	-1.0933	0.062962	0.00070175	NaN	83.647	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32132			11595	826	9516	9527							0.058622914027409934
FLLDITADAI	10	Unmodified	_FLLDITADAI_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-7|BLTP1;REV__nc|ENSG00000138688|Q2LD37-6|BLTP1	REV__nc|ENSG00000138688|Q2LD37-6|BLTP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.7781372070312	2	546.30279	1090.59103	-0.20005	-0.00010929	-3.1821	-0.0017384	-3.3822	-0.0018477	546.3012151839058	62.06	0.38214	62.06	61.912	62.294	0					14	8	2	0	0	0	0.027422	1	5512	5512		82.241	18.033	1	379410	+		11596	19560;28886	9517	9528	12630	12630					0.049354765546468116
FLLDKALLI	9	Unmodified	_FLLDKALLI_					0	0	0		nc|ENSG00000141968|P15498-2|VAV1;ENSG00000141968|ENST00000602142|VAV1	nc|ENSG00000141968|P15498-2|VAV1	nc|ENSG00000141968|P15498-2|VAV1	MULTI-MSMS	OvCa99_classI_Rep5	1	523.3380126953125	2	523.336436	1044.65832	0.35575	0.00018618	1.6861	0.00088238	2.0418	0.0010686	523.3371871126451	141.61	2.3768	141.61	141.34	143.71	0					94	47	4	0	0	0	0.059253	1	16556	16556		113.41	0	1	628400			11597	4950	9518	9529	12631	12631					0.13777551556268008
FLLDKALLI	9	Unmodified	_FLLDKALLI_					0	0	0		nc|ENSG00000141968|P15498-2|VAV1;ENSG00000141968|ENST00000602142|VAV1	nc|ENSG00000141968|P15498-2|VAV1	nc|ENSG00000141968|P15498-2|VAV1	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.3353881835938	2	523.336436	1044.65832	-0.24806	-0.00012982	0.22387	0.00011716	-0.024193	-1.2661E-05	523.3365176471518	142.26	1.8478	140.79	140.39	142.24	-1.4627					59	35	3	0	0	0	0.12515	1	13915	13915		90.37	2.6155	1	55152			11598	4950	9518	9529	12632	12632					0.13777551556268008
FLLDKKIGV	9	Unmodified	_FLLDKKIGV_					0	0	0		nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2;chr12:69588262-69592059|91|14.8|0.17|6.48|+|2|CCT2,CCT2|2;chr12:69589976-69592059|214|14.43|0.29|5.65|+|2|None,CCT2|1	nc|ENSG00000166226|P78371-2|CCT2	nc|ENSG00000166226|P78371-2|CCT2	MULTI-MSMS	OvCa99_classI_Rep5	1	516.8270874023438	2	516.826235	1031.63792	0.64087	0.00033122	1.4123	0.00072994	2.0532	0.0010612	516.8269431411277	90.955	0.92577	90.955	90.656	91.582	0					66	22	5	0	0	0	0.041116	2	9784	9757;9784		125.81	40.455	1	36197000			11599	6655	9519	9530	12633;12634	12634					0.12336380896454102
FLLDKKIGV	9	Unmodified	_FLLDKKIGV_					0	0	0		nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2;chr12:69588262-69592059|91|14.8|0.17|6.48|+|2|CCT2,CCT2|2;chr12:69589976-69592059|214|14.43|0.29|5.65|+|2|None,CCT2|1	nc|ENSG00000166226|P78371-2|CCT2	nc|ENSG00000166226|P78371-2|CCT2	MULTI-MSMS	OvCa9_classI_Rep2	2	516.8255004882812	2	516.826235	1031.63792	0.15192	7.8516E-05	-0.45839	-0.00023691	-0.30647	-0.00015839	516.8259882773799	93.252	3.266	92.084	91.806	95.072	-1.168					150	64	3	0	0	0	0.083631	4	8325	8325;8331;8337;8343		101.6	24.757	1	1371500			11600	6655	9519	9530	12635;12636;12637;12638	12635					0.12336380896454102
FLLDKKIGV	9	Unmodified	_FLLDKKIGV_					0	0	0		nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2;chr12:69588262-69592059|91|14.8|0.17|6.48|+|2|CCT2,CCT2|2;chr12:69589976-69592059|214|14.43|0.29|5.65|+|2|None,CCT2|1	nc|ENSG00000166226|P78371-2|CCT2	nc|ENSG00000166226|P78371-2|CCT2	MULTI-MSMS	OvCa9_classI_Rep3	3	516.826904296875	2	516.826235	1031.63792	-0.15609	-8.0669E-05	-0.31866	-0.00016469	-0.47475	-0.00024536	516.8259433514464	94.159	3.732	92.264	91.95	95.682	-1.8956					143	73	3	0	0	0	0.059253	5	6064	6064;6070;6076;6082;6090		113.41	28.148	1	1619200			11601	6655	9519	9530	12639;12640;12641;12642;12643	12639					0.12336380896454102
FLLDSWIVL	9	Unmodified	_FLLDSWIVL_					0	0	0		ADGRG2|p.A686V|1|0.08|ENSG00000173698|chrX:19003019-19003019|G/A|missense_variant	ADGRG2|p.A686V|1|0.08|ENSG00000173698|chrX:19003019-19003019|G/A|missense_variant	ADGRG2|p.A686V|1|0.08|ENSG00000173698|chrX:19003019-19003019|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.306884765625	2	553.318243	1104.62193	1.2675	0.00070134	-2.4336	-0.0013465	-1.1661	-0.00064521	553.3165026717652	93.494	0.41003	93.494	93.263	93.673	0					14	9	2	0	0	0	0.027425	1	10127	10127		50.025	0	1	365390			11602	40	9520	9531	12644	12644					0.07380674659543729
FLLEALFLN	9	Unmodified	_FLLEALFLN_					0	0	0			REV__ENSG00000072071|ENST00000361434|ADGRL1	REV__ENSG00000072071|ENST00000361434|ADGRL1	MULTI-MSMS	OvCa99_classI_Rep5	1	540.3107299804688	2	540.310418	1078.60628	1.3861	0.00074891	-1.3901	-0.00075108	-0.0040072	-2.1651E-06	540.3095555383816	119.31	1.271	119.31	118.96	120.23	0					57	29	2	0	0	0	0.10363	1	13686	13686		96.19	7.5476	1	798440	+		11603	16909	9521	9532	12645	12645					0.07012388142516102
FLLEGIRSL	9	Unmodified	_FLLEGIRSL_					0	0	0		ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-MSMS	OvCa99_classI_Rep5	1	524.3146362304688	2	524.313492	1046.61243	1.1783	0.00061779	1.2158	0.00063746	2.3941	0.0012552	524.3140134818669	122.82	1.2445	122.82	122.63	123.87	0					68	26	3	0	0	0	0.060996	3	14167	14144;14167;14193		112.41	19.259	1	869910			11604	3588	9522	9533	12646;12647;12648	12647					0.09098906374038052
FLLEGIRSL	9	Unmodified	_FLLEGIRSL_					0	0	0		ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.3134155273438	2	524.313492	1046.61243	-1.6335	-0.00085646	1.2019	0.00063016	-0.43161	-0.0002263	524.3140565145617	124.49	2.9158	123.1	122.13	125.04	-1.3908					109	57	3	0	0	0	0.17606	1	11798	11798		80.455	21.673	1	87546			11605	3588	9522	9533	12649	12649					0.09098906374038052
FLLEHIRIL	9	Unmodified	_FLLEHIRIL_					0	0	0		NISCH|p.L754Sfs*219|1|0.14|ENSG00000010322|chr3:52487751-52487751|C/-|frameshift_variant;ENSG00000010322|ENST00000345716|NISCH;nc|ENSG00000010322|Q9Y2I1-2|NISCH;ENST00000489895.5_1_3:52514938-52524786:+|nuORF	NISCH|p.L754Sfs*219|1|0.14|ENSG00000010322|chr3:52487751-52487751|C/-|frameshift_variant;ENSG00000010322|ENST00000345716|NISCH;ENST00000489895.5_1_3:52514938-52524786:+|nuORF	NISCH|p.L754Sfs*219|1|0.14|ENSG00000010322|chr3:52487751-52487751|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.7805786132812	2	577.358234	1152.70191	1.2706	0.00073361	1.1331	0.00065422	2.4038	0.0013878	577.3588142745828	119.82	0.50639	119.82	119.59	120.09	0					20	11	2	0	0	0	0.027295	1	13764	13764		74.255	22.92	1	127970			11606	15431;944;12688	9523	9534	12650	12650					0.13167161053411292
FLLEKGYEV	9	Unmodified	_FLLEKGYEV_					0	0	0		tr|A0A7D6VQ49|A0A7D6VQ49_9CLOTGDP-mannose4,6-dehydrataseOS=ClostridiumintestinaleOX=36845GN=gmdPE=3SV=1;nc|ENSG00000112699|O60547-2|GMDS;ENSG00000112699|ENST00000380815|GMDS	tr|A0A7D6VQ49|A0A7D6VQ49_9CLOTGDP-mannose4,6-dehydrataseOS=ClostridiumintestinaleOX=36845GN=gmdPE=3SV=1	tr|A0A7D6VQ49|A0A7D6VQ49_9CLOTGDP-mannose4,6-dehydrataseOS=ClostridiumintestinaleOX=36845GN=gmdPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	549.3001098632812	2	549.297507	1096.58046	2.0026	0.0011	-0.02458	-1.3502E-05	1.978	0.0010865	549.2972282417667	99.759	0.91914	99.759	99.361	100.28	0					40	21	3	0	0	0	0.16264	1	11035	11035		82.75	18.543	1	1726900			11607	34820	9524	9535	12651	12651					0.03603493900232024
FLLEKGYEV	9	Unmodified	_FLLEKGYEV_					0	0	0		tr|A0A7D6VQ49|A0A7D6VQ49_9CLOTGDP-mannose4,6-dehydrataseOS=ClostridiumintestinaleOX=36845GN=gmdPE=3SV=1;nc|ENSG00000112699|O60547-2|GMDS;ENSG00000112699|ENST00000380815|GMDS	tr|A0A7D6VQ49|A0A7D6VQ49_9CLOTGDP-mannose4,6-dehydrataseOS=ClostridiumintestinaleOX=36845GN=gmdPE=3SV=1	tr|A0A7D6VQ49|A0A7D6VQ49_9CLOTGDP-mannose4,6-dehydrataseOS=ClostridiumintestinaleOX=36845GN=gmdPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	549.297507	1096.58046	-0.58029	-0.00031875	-7.1378	-0.0039208	-7.7181	-0.0042395	549.7955315175689	100.27	0.29703	99.444	99.311	99.608	-0.83051	-0.1575	-0.0066768	NaN	82.75	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7103			11608	34820	9524	9535							0.03603493900232024
FLLEKPFSV	9	Unmodified	_FLLEKPFSV_					0	0	0		nc|ENSG00000185238|O60678-2|PRMT3;ENSG00000185238|ENST00000331079|PRMT3	nc|ENSG00000185238|O60678-2|PRMT3	nc|ENSG00000185238|O60678-2|PRMT3	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3096923828125	2	540.310418	1078.60628	-2.1488	-0.001161	-1.0685	-0.00057733	-3.2173	-0.0017384	540.3097600180628	118.45	2.7194	118.3	117.89	120.61	-0.14755					130	54	4	0	0	0	0.2422	1	11439	11439		69.628	5.4204	1	293380			11609	8235	9525	9536	12652	12652					0.07012388142516102
FLLERGAPCQL	11	Unmodified	_FLLERGAPCQL_					0	0	0			REV__ENST00000394833.6_1_4:103265936-103266233:-|nuORF	REV__ENST00000394833.6_1_4:103265936-103266233:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	623.838134765625	2	623.834265	1245.65398	1.6414	0.001024	0.55704	0.0003475	2.1985	0.0013715	623.8345392324511	126.32	0.51968	126.32	126.09	126.61	0					25	10	3	0	0	0	0.4646	1	14608	14608		56.434	3.3448	1	461930	+		11610	25303	9526	9537	12653	12653					0.0409771907106915
FLLESIQKI	9	Unmodified	_FLLESIQKI_					0	0	0			REV__ENSG00000197056|ENST00000359858|ZMYM1	REV__ENSG00000197056|ENST00000359858|ZMYM1	MULTI-MSMS	OvCa9_classI_Rep3	3	545.829833984375	2	545.828975	1089.6434	-0.94392	-0.00051522	0.2359	0.00012876	-0.70801	-0.00038645	545.8290461985099	97.045	3.3726	95.216	94.827	98.2	-1.8286					181	65	5	0	0	0	0.14998	1	6482	6482		84.916	0	1	5296800	+		11611	22889	9527	9538	12654	12654					0.10216059688286805
FLLFLFMYL	9	Unmodified	_FLLFLFMYL_					0	0	0		ENSG00000186509|ENST00000335397|OR9Q1	ENSG00000186509|ENST00000335397|OR9Q1	ENSG00000186509|ENST00000335397|OR9Q1	MULTI-SECPEP	OvCa99_classI_Rep5	1	603.315673828125	2	603.835214	1205.65588	1.9538	0.0011798	-2.1109	-0.0012746	-0.15711	-9.4866E-05	604.3361594386337	129.54	0.93858	129.54	129.07	130.01	0					24	19	2	0	0	0	0.027462	1	15072	15072		39.021	1.21	1	49626			11612	8340	9528	9539	12655	12655					0.06127379826989454
FLLFLPSI	8	Unmodified	_FLLFLPSI_					0	0	0			REV__ENSG00000108576|ENST00000650711|SLC6A4	REV__ENSG00000108576|ENST00000650711|SLC6A4	MULTI-MSMS	OvCa99_classI_Rep5	1	475.2899169921875	2	475.291497	948.568441	0.8504	0.00040419	-3.0653	-0.0014569	-2.2149	-0.0010527	475.28997401569427	159.19	1.9374	159.19	158.27	160.21	0					52	39	2	0	0	0	0.49583	1	18636	18636		77.944	12.046	1	73153	+		11613	17896	9529	9540	12656	12656					0.09209921947717703
FLLFPDMEA	9	Oxidation (M)	_FLLFPDM(Oxidation (M))EA_		FLLFPDM(1)EA		FLLFPDM(110)EA	0	0	1		ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	ENSG00000173369|ENST00000509305|C1QB	ENSG00000173369|ENST00000509305|C1QB	MULTI-MSMS	OvCa99_classI_Rep5	1	549.7634887695312	2	549.762443	1097.51033	1.0362	0.00056968	1.1559	0.00063549	2.1922	0.0012052	549.7628795568598	145.79	2.1821	145.79	145.27	147.45	0					112	44	4	0	0	0	0.057208	3	17035	17035;17060;17085		114.59	43.208	1	699190			11614	7370	9530	9541	12657;12658;12659	12657		222			-0.03452127759874202
FLLFPDMEA	9	Oxidation (M)	_FLLFPDM(Oxidation (M))EA_		FLLFPDM(1)EA		FLLFPDM(68)EA	0	0	1		ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	ENSG00000173369|ENST00000509305|C1QB	ENSG00000173369|ENST00000509305|C1QB	MULTI-MSMS	OvCa99_classI_Rep5	1	549.7635498046875	2	549.762443	1097.51033	1.3622	0.00074889	0.30814	0.0001694	1.6703	0.00091829	549.7624849600941	148.94	1.5677	148.94	147.98	149.55	0					83	31	3	0	0	0	0.25214	1	17466	17466		68.485	26.01	1	182690			11615	7370	9530	9541	12660	12660		222			-0.03452127759874202
FLLFPDMEA	9	Oxidation (M)	_FLLFPDM(Oxidation (M))EA_		FLLFPDM(1)EA		FLLFPDM(85)EA	0	0	1		ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	ENSG00000173369|ENST00000509305|C1QB	ENSG00000173369|ENST00000509305|C1QB	MULTI-MSMS	OvCa99_classI_Rep5	1	549.7738647460938	2	549.762443	1097.51033	1.0082	0.00055426	3.856	0.0021199	4.8642	0.0026741	549.7642897467599	149.63	2.5698	149.63	149.31	151.88	0					74	51	2	0	0	0	0.14739	1	17527	17527		85.359	10.316	1	363850			11616	7370	9530	9541	12661	12661		222			-0.03452127759874202
FLLGDRDI	8	Unmodified	_FLLGDRDI_					0	0	0			REV__ENSG00000180332|ENST00000379108|KCTD4	REV__ENSG00000180332|ENST00000379108|KCTD4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.2907409667969	2	474.761092	947.507631	1.6896	0.00080216	-1.8258	-0.0008668	-0.13617	-6.4649E-05	474.76011676954965	96.971	0.89772	94.545	94.322	95.22	-2.4256					35	17	3	0	0	0	0.028476	1	8644	8644		47.916	0	1	74806	+		11617	22167	9531	9542	12662	12662					0.031777848974684275
FLLGGYLLF	9	Unmodified	_FLLGGYLLF_					0	0	0		ENSG00000136247|ENST00000335965|ZDHHC4;ENST00000474738.1_1_7:6624591-6628538:+|nuORF	ENSG00000136247|ENST00000335965|ZDHHC4	ENSG00000136247|ENST00000335965|ZDHHC4	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.7988891601562	2	521.802229	1041.5899	-2.5661	-0.001339	-2.4379	-0.0012721	-5.004	-0.0026111	521.8006681074736	125.81	1.1354	124.4	123.83	124.97	-1.4143					49	22	3	0	0	0	0.42921	1	11981	11981		49.211	6.7363	1	210200			11618	4476	9532	9543	12663	12663					0.07077306976407272
FLLGKEVSL	9	Unmodified	_FLLGKEVSL_					0	0	0		TBC1D9B|p.G1112Vfs*34|1|0.27|ENSG00000197226|chr5:179863866-179863867|-/A|frameshift_variant;ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B	TBC1D9B|p.G1112Vfs*34|1|0.27|ENSG00000197226|chr5:179863866-179863867|-/A|frameshift_variant	TBC1D9B|p.G1112Vfs*34|1|0.27|ENSG00000197226|chr5:179863866-179863867|-/A|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	503.3027648925781	2	503.302593	1004.59063	1.2816	0.00064503	0.13662	6.8763E-05	1.4182	0.0007138	503.30246313242986	111.35	1.0434	111.35	111.07	112.11	0					52	22	3	0	0	0	0.075543	2	12642	12642;12666		104.06	21.816	1	1260600			11619	8691	9533	9544	12664;12665	12664					0.08852101625473097
FLLGLRVVTC	10	Unmodified	_FLLGLRVVTC_					0	0	0		ENSG00000137414|ENST00000259963|FAM8A1	ENSG00000137414|ENST00000259963|FAM8A1	ENSG00000137414|ENST00000259963|FAM8A1	MULTI-MSMS	OvCa9_classI_Rep3	3	560.8295288085938	2	560.830995	1119.64744	-0.50151	-0.00028126	-2.9885	-0.0016761	-3.49	-0.0019573	560.8292303204496	118.3	2.0812	117.27	116.79	118.87	-1.0324					75	41	3	0	0	0	0.48198	1	8917	8917		56.721	1.2168	1	154380			11620	4583	9534	9545	12666	12666					0.09239825910344734
FLLGPRLVLA	10	Unmodified	_FLLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	OvCa99_classI_Rep5	1	549.8568115234375	2	549.855327	1097.6961	0.74238	0.0004082	1.0376	0.00057054	1.78	0.00097874	549.8557359958681	131.8	2.0198	131.8	131.15	133.17	0					93	42	4	0	0	0	0.46756	2	15294	15294;15315		58.782	21.623	1	1057500			11621	7096	9535	9546	12667;12668	12667					0.15116062541756037
FLLGPRLVLA	10	Unmodified	_FLLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	OvCa9_classI_Rep2	2	549.855224609375	2	549.855327	1097.6961	1.0643	0.00058521	-1.2465	-0.00068539	-0.18218	-0.00010017	549.8544457110994	131.23	2.0182	131	130.65	132.67	-0.22696					85	40	4	0	0	0	0.37918	6	12948	12906;12912;12916;12935;12941;12948		71.296	32.49	1	157210			11622	7096	9535	9546	12669;12670;12671;12672;12673;12674	12674					0.15116062541756037
FLLGPRLVLA	10	Unmodified	_FLLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	OvCa9_classI_Rep3	3	549.8555908203125	2	549.855327	1097.6961	-0.6309	-0.00034691	0.33809	0.0001859	-0.29281	-0.000161	549.8553329669212	132.37	1.7747	131.25	130.94	132.71	-1.1249					85	35	3	0	0	0	0.3976	6	10577	10566;10577;10584;10588;10594;10602		68.787	21.129	1	116890			11623	7096	9535	9546	12675;12676;12677;12678;12679;12680	12676					0.15116062541756037
FLLGPRLVLA	10	Unmodified	_FLLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.8544311523438	2	549.855327	1097.6961	3.5639	0.0019596	-4.3457	-0.0023895	-0.78176	-0.00042985	549.852788898491	132.72	2.1613	131.21	130.85	133.01	-1.5014					110	43	4	0	0	0	0.33376	5	12810	12765;12774;12785;12797;12810		76.774	30.822	1	199410			11624	7096	9535	9546	12681;12682;12683;12684;12685	12685					0.15116062541756037
FLLGSIGLLL	10	Unmodified	_FLLGSIGLLL_					0	0	0			REV__ENSG00000184544|ENST00000571134|DHRS7C	REV__ENSG00000184544|ENST00000571134|DHRS7C	MULTI-MSMS	OvCa99_classI_Rep5	1	523.3379516601562	2	523.336436	1044.65832	0.35575	0.00018618	1.6861	0.00088238	2.0418	0.0010686	523.3371871126451	141.61	2.3768	141.61	141.34	143.71	0					94	47	4	0	0	0	0.35697	1	16533	16533		73.975	7.5455	1	628400	+		11625	22436	9536	9547	12686	12686					0.13777551556268008
FLLHFYTV	8	Unmodified	_FLLHFYTV_					0	0	0		nc|ENSG00000106991|P17813-2|ENG;ENSG00000106991|ENST00000373203|ENG	nc|ENSG00000106991|P17813-2|ENG	nc|ENSG00000106991|P17813-2|ENG	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.3038330078125	2	520.284203	1038.55385	-0.87881	-0.00045723	0.15222	7.9197E-05	-0.72659	-0.00037804	520.2841970984284	91.714	1.0626	89.171	88.708	89.771	-2.5425					37	20	2	0	0	0	0.028476	1	7923	7923		20.482	0	1	91705			11626	2580	9537	9548	12687	12687					0.036118497995630605
FLLHIQQQV	9	Unmodified	_FLLHIQQQV_					0	0	0		ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	MULTI-MSMS	OvCa99_classI_Rep5	1	563.325927734375	2	563.324391	1124.63423	2.124	0.0011965	0.0728	4.101E-05	2.1968	0.0012375	563.3243926751559	101.22	1.8643	101.22	100.9	102.76	0					72	43	3	0	0	0	0.032351	3	11227	11227;11249;11279		133.47	50.182	1	11111000			11627	2982	9538	9549	12688;12689;12690	12688					0.0768971112258896
FLLHPSLALL	10	Unmodified	_FLLHPSLALL_					0	0	0			REV__ENST00000344651.4_1_12:121159601-121159766:+|nuORF	REV__ENST00000344651.4_1_12:121159601-121159766:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	562.3416748046875	2	562.347335	1122.68012	-2.9015	-0.0016316	-4.2839	-0.002409	-7.1854	-0.0040407	562.3448419475409	142.33	4.504	141.32	140	144.5	-1.0106					205	90	3	0	0	0	0.69986	1	11781	11781		30.504	2.6214	1	106680	+		11628	24683	9539	9550	12691	12691					0.12368356304841654
FLLHRSIHG	9	Unmodified	_FLLHRSIHG_					0	0	0		ENST00000562866.1_1_16:89778620-89783296:+|nuORF	ENST00000562866.1_1_16:89778620-89783296:+|nuORF	ENST00000562866.1_1_16:89778620-89783296:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	540.3106079101562	2	540.309075	1078.6036	1.3861	0.00074891	1.0949	0.00059159	2.481	0.0013405	540.3095555383816	119.31	1.271	119.31	118.96	120.23	0					57	29	2	0	0	0	0.42676	1	13711	13711		49.442	5.3247	1	798440			11629	13779	9540	9551	12692	12692					0.06743977528230971
FLLHVQQQI	9	Unmodified	_FLLHVQQQI_					0	0	0		nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B	nc|ENSG00000138802|O95487-2|SEC24B	nc|ENSG00000138802|O95487-2|SEC24B	MULTI-MSMS	OvCa99_classI_Rep5	1	563.3255615234375	2	563.324391	1124.63423	2.5189	0.0014189	0.23554	0.00013268	2.7544	0.0015516	563.324443237775	99.876	0.79238	99.876	99.652	100.44	0					45	18	4	0	0	0	0.071436	1	11057	11057		106.42	24.11	1	1542800			11630	4735	9541	9552	12693	12693					0.07689711122611698
FLLIAVIPE	9	Unmodified	_FLLIAVIPE_					0	0	0			REV__ENSG00000164742|ENST00000297323|ADCY1	REV__ENSG00000164742|ENST00000297323|ADCY1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.8133850097656	2	507.815336	1013.61612	-0.12107	-6.1481E-05	-4.4571	-0.0022634	-4.5782	-0.0023249	507.81301768077884	108.09	2.3576	107.86	106.9	109.26	-0.22498					116	47	4	0	0	0	0.17908	4	10126	10096;10102;10114;10126		79.939	10.417	1	960970	+		11631	21016	9542	9553	12694;12695;12696;12697	12697					0.10985576147891152
FLLIAVIPE	9	Unmodified	_FLLIAVIPE_					0	0	0			REV__ENSG00000164742|ENST00000297323|ADCY1	REV__ENSG00000164742|ENST00000297323|ADCY1	MULTI-MSMS	OvCa9_classI_Rep3	3	507.8125305175781	2	507.815336	1013.61612	-0.47217	-0.00023978	-4.1397	-0.0021022	-4.6119	-0.002342	507.8132436809137	108.94	1.7138	107.74	107.32	109.03	-1.1978					102	32	5	0	0	0	0.27546	2	7811	7811;7829		65.803	10.042	1	1384800	+		11632	21016	9542	9553	12698;12699	12698					0.10985576147891152
FLLIAVIPE	9	Unmodified	_FLLIAVIPE_					0	0	0			REV__ENSG00000164742|ENST00000297323|ADCY1	REV__ENSG00000164742|ENST00000297323|ADCY1	MSMS	OvCa9_classI_Rep4_	4	507.81365966796875	2	507.815336	1013.61612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.66	1	107.98	107.48	108.48	-1.6843								0	0	0	0.11949	1	10070	10070		68.485	10.255	1		+		11633	21016	9542	9553	12700	12700					0.10985576147891152
FLLIAVIPE	9	Unmodified	_FLLIAVIPE_					0	0	0			REV__ENSG00000164742|ENST00000297323|ADCY1	REV__ENSG00000164742|ENST00000297323|ADCY1	MSMS	OvCa9_classI_Rep4_	4	507.8135070800781	2	507.815336	1013.61612	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.77	1	108.17	107.67	108.67	-1.6011								0	0	0	0.11949	1	10082	10082		68.485	10.673	1		+		11634	21016	9542	9553	12701	12701					0.10985576147891152
FLLIPMTSAP	10	Unmodified	_FLLIPMTSAP_					0	0	0			REV__ENST00000491723.5_1_13:51995314-52026679:-|nuORF	REV__ENST00000491723.5_1_13:51995314-52026679:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	544.8209228515625	2	545.304278	1088.594	-1.2594	-0.00068674	-3.0049	-0.0016386	-4.2643	-0.0023253	545.3023253515296	102	2.5208	101.24	101.01	103.53	-0.76401					88	50	3	0	0	0	0.026639	1	9575	9575		63.306	34.157	1	354510	+		11635	26681	9543	9554	12702	12702					0.053250284078103505
FLLIPMTSAP	10	Unmodified	_FLLIPMTSAP_					0	0	0			REV__ENST00000491723.5_1_13:51995314-52026679:-|nuORF	REV__ENST00000491723.5_1_13:51995314-52026679:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	545.304278	1088.594	1.0702	0.00058356	-4.3387	-0.0023659	-3.2686	-0.0017824	545.301514540575	101.38	0.45779	101.38	101.15	101.61	0	0.095464	-0.00097594	NaN	71.296	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	403870	+		11636	26681	9543	9554							0.053250284078103505
FLLIPVDDD	9	Unmodified	_FLLIPVDDD_					0	0	0			REV__nc|ENSG00000147316|Q8NEM0-3|MCPH1	REV__nc|ENSG00000147316|Q8NEM0-3|MCPH1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.3120727539062	2	523.773865	1045.53318	1.671	0.00087524	-2.99	-0.0015661	-1.319	-0.00069086	524.2750307014908	97.017	0.34183	97.017	96.838	97.18	0					11	7	2	0	0	0	0.027462	1	10630	10630		33.516	16.151	1	295860	+		11637	20057	9544	9555	12703	12703					0.012232146292262769
FLLIQHPVL	9	Unmodified	_FLLIQHPVL_					0	0	0		tr|A0A553SPZ1|A0A553SPZ1_NIACIDelta-lactam-biosyntheticde-N-acetylaseOS=NialliacirculansOX=1397GN=pdaAPE=4SV=1	tr|A0A553SPZ1|A0A553SPZ1_NIACIDelta-lactam-biosyntheticde-N-acetylaseOS=NialliacirculansOX=1397GN=pdaAPE=4SV=1	tr|A0A553SPZ1|A0A553SPZ1_NIACIDelta-lactam-biosyntheticde-N-acetylaseOS=NialliacirculansOX=1397GN=pdaAPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3335571289062	2	540.334227	1078.6539	0.19064	0.00010301	-0.21146	-0.00011426	-0.020819	-1.1249E-05	540.3339476899532	130.28	2.8117	130.05	129.46	132.28	-0.22696					132	56	4	0	0	0	0.25214	3	12801	12774;12801;12865		68.485	2.0554	1	240030			11638	34097	9545	9556	12704;12705;12706	12705					0.1177208713336313
FLLIQHPVL	9	Unmodified	_FLLIQHPVL_					0	0	0		tr|A0A553SPZ1|A0A553SPZ1_NIACIDelta-lactam-biosyntheticde-N-acetylaseOS=NialliacirculansOX=1397GN=pdaAPE=4SV=1	tr|A0A553SPZ1|A0A553SPZ1_NIACIDelta-lactam-biosyntheticde-N-acetylaseOS=NialliacirculansOX=1397GN=pdaAPE=4SV=1	tr|A0A553SPZ1|A0A553SPZ1_NIACIDelta-lactam-biosyntheticde-N-acetylaseOS=NialliacirculansOX=1397GN=pdaAPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3345336914062	2	540.334227	1078.6539	0.71527	0.00038649	-0.87238	-0.00047138	-0.15711	-8.4892E-05	540.3335173912039	131.44	2.5576	130.32	129.91	132.47	-1.1249					119	51	4	0	0	0	0.42057	1	10504	10504		50.025	9.2464	1	239410			11639	34097	9545	9556	12707	12707					0.1177208713336313
FLLIQHPVL	9	Unmodified	_FLLIQHPVL_					0	0	0		tr|A0A553SPZ1|A0A553SPZ1_NIACIDelta-lactam-biosyntheticde-N-acetylaseOS=NialliacirculansOX=1397GN=pdaAPE=4SV=1	tr|A0A553SPZ1|A0A553SPZ1_NIACIDelta-lactam-biosyntheticde-N-acetylaseOS=NialliacirculansOX=1397GN=pdaAPE=4SV=1	tr|A0A553SPZ1|A0A553SPZ1_NIACIDelta-lactam-biosyntheticde-N-acetylaseOS=NialliacirculansOX=1397GN=pdaAPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3341064453125	2	540.334227	1078.6539	3.3207	0.0017943	-3.4279	-0.0018522	-0.10719	-5.7918E-05	540.3322174762676	131.73	3.1393	130.23	129.77	132.91	-1.5015					134	63	4	0	0	0	0.11842	3	12684	12684;12735;12777		92.191	1.512	1	310750			11640	34097	9545	9556	12708;12709;12710	12708					0.1177208713336313
FLLITAPLL	9	Unmodified	_FLLITAPLL_					0	0	0			REV__ENSG00000262543|ENST00000573100|SMIM28	REV__ENSG00000262543|ENST00000573100|SMIM28	MULTI-MSMS	OvCa9_classI_Rep2	2	500.8249816894531	2	500.825704	999.636855	-1.7989	-0.00090096	-1.7452	-0.00087405	-3.5442	-0.001775	500.8247449295919	61.278	4.4126	58.518	58.094	62.506	-2.7593					209	84	4	0	0	0	0.50066	1	4612	4612		42.474	1.9018	1	946070	+		11641	23573	9546	9557	12711	12711					0.13702166527559712
FLLIYLITML	10	Unmodified	_FLLIYLITML_					0	0	0		ENSG00000181767|ENST00000313503|OR8H2;ENSG00000181693|ENST00000641600|OR8H1;ENSG00000181761|ENST00000313472|OR8H3	ENSG00000181767|ENST00000313503|OR8H2	ENSG00000181767|ENST00000313503|OR8H2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	619.8690795898438	2	620.374704	1238.73485	-1.3091	-0.00081213	-3.661	-0.0022712	-4.9701	-0.0030833	620.3727362437986	146.36	1.0917	144.93	144.44	145.53	-1.4357					31	20	2	0	0	0	0.027084	1	14377	14377		31.955	5.2619	1	28277			11642	7952	9547	9558	12712	12712					0.12503607061239563
FLLKFVNSY	9	Unmodified	_FLLKFVNSY_					0	0	0		nc|ENSG00000131620|Q5XXA6-2|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;nc|ENSG00000131620|Q5XXA6-3|ANO1	nc|ENSG00000131620|Q5XXA6-2|ANO1	nc|ENSG00000131620|Q5XXA6-2|ANO1	MULTI-MSMS	OvCa99_classI_Rep5	1	565.8186645507812	2	565.815867	1129.61718	1.2567	0.00071105	0.8505	0.00048122	2.1072	0.0011923	565.8162335369739	154.05	1.0949	154.05	153.78	154.88	0					45	21	3	0	0	0	0.31747	1	18066	18066		60.972	4.2509	1	208820			11643	4077	9548	9559	12713	12713					0.05755790516809611
FLLKKRKW	8	Unmodified	_FLLKKRKW_					0	0	0		nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3	nc|ENSG00000070882|Q9H4L5-2|OSBPL3	nc|ENSG00000070882|Q9H4L5-2|OSBPL3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.3343505859375	2	559.863486	1117.71242	-0.23378	-0.00013089	-2.0224	-0.0011323	-2.2562	-0.0012632	559.8622935192755	106.93	0.63233	105.06	104.75	105.38	-1.8785					19	11	2	0	0	0	0.028476	1	9716	9716		12.959	0	1	15579			11644	1439	9549	9560	12714	12714					0.1582718849849698
FLLKLTPLL	9	Unmodified	_FLLKLTPLL_					0	0	0		nc|ENSG00000008838|O75448-2|MED24;ENSG00000008838|ENST00000394128|MED24;MED24|p.G459Efs*15|1|0.18|ENSG00000008838|chr17:40028859-40028860|-/T|frameshift_variant	nc|ENSG00000008838|O75448-2|MED24	nc|ENSG00000008838|O75448-2|MED24	MULTI-MSMS	OvCa99_classI_Rep5	1	529.3545532226562	2	529.354628	1056.6947	1.3054	0.00069103	1.0926	0.00057835	2.398	0.0012694	529.3550154894339	146.95	1.0255	146.95	146.67	147.69	0					52	20	4	0	0	0	0.16562	2	17186	17186;17209		82.241	15.811	1	387130			11645	925	9550	9561	12715;12716	12715					0.16862428452986933
FLLKSCPLL	9	Unmodified	_FLLKSCPLL_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-MSMS	OvCa99_classI_Rep5	1	517.3092651367188	2	517.309364	1032.60417	1.5369	0.00079505	0.79037	0.00040887	2.3273	0.0012039	517.3096358267778	128.03	1.59	128.03	127.72	129.31	0					63	33	2	0	0	0	0.40667	1	14864	14864		51.335	1.3109	1	150760			11646	4856	9551	9562	12717	12717					0.08917636133060114
FLLLASGLVI	10	Unmodified	_FLLLASGLVI_					0	0	0		nc|ENSG00000122420|P43088-6|PTGFR;nc|ENSG00000122420|P43088-7|PTGFR;nc|ENSG00000122420|P43088-3|PTGFR;nc|ENSG00000122420|P43088-4|PTGFR;nc|ENSG00000122420|P43088-5|PTGFR;nc|ENSG00000122420|P43088-2|PTGFR;ENSG00000122420|ENST00000370757|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	MULTI-MSMS	OvCa99_classI_Rep5	1	523.8394775390625	2	523.336436	1044.65832	0.35575	0.00018618	1.6861	0.00088238	2.0418	0.0010686	523.3371871126451	141.61	2.3768	141.61	141.34	143.71	0					94	47	4	0	0	0	0.43592	1	16686	16686		63.306	9.9548	1	628400			11647	3530	9552	9563	12718	12718					0.13777551556268008
FLLLHLSPI	9	Unmodified	_FLLLHLSPI_					0	0	0			REV__ENSG00000153902|ENST00000310123|LGI4	REV__ENSG00000153902|ENST00000310123|LGI4	MULTI-MSMS	OvCa99_classI_Rep5	1	526.8309936523438	2	526.828778	1051.643	1.9245	0.0010139	-0.05516	-2.906E-05	1.8694	0.00098484	526.8285429057694	137.03	1.0943	137.03	136.73	137.82	0					55	22	4	0	0	0	0.25214	1	15996	15996		68.485	0	1	490570	+		11648	20352	9553	9564	12719	12719					0.11924684759082993
FLLLITWLS	9	Unmodified	_FLLLITWLS_					0	0	0			REV__nc|ENSG00000154258|Q8IUA7-4|ABCA9	REV__nc|ENSG00000154258|Q8IUA7-4|ABCA9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.79638671875	2	553.336436	1104.65832	-0.61629	-0.00034102	-2.9809	-0.0016494	-3.5972	-0.0019904	553.3346289723002	69.585	1.7571	66.104	65.565	67.322	-3.4812					70	35	4	0	0	0	0.027462	1	5273	5273		25.45	0	1	246330	+		11649	20371	9554	9565	12720	12720					0.11017551556278704
FLLLMATPL	9	Unmodified	_FLLLMATPL_					0	0	0		ENSG00000105329|ENST00000221930|TGFB1	ENSG00000105329|ENST00000221930|TGFB1	ENSG00000105329|ENST00000221930|TGFB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.8041076660156	2	509.803914	1017.59328	2.0238	0.0010317	-2.3362	-0.001191	-0.31239	-0.00015926	509.80258654056354	136.53	4.9049	134.99	133.61	138.51	-1.5437					290	101	5	0	0	0	0.61208	1	13446	13446		30.504	2.2494	1	173450			11650	2442	9555	9566	12721	12721					0.08518233758763927
FLLLSIGPVP	10	Unmodified	_FLLLSIGPVP_					0	0	0		ENST00000476232.6_2_1:177993543-178000734:-|nuORF	ENST00000476232.6_2_1:177993543-178000734:-|nuORF	ENST00000476232.6_2_1:177993543-178000734:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	528.3292236328125	2	528.328611	1054.64267	0.61734	0.00032616	-0.83649	-0.00044194	-0.21915	-0.00011578	528.3279822328798	127.76	3.0131	127.54	127.09	130.11	-0.22697					168	60	4	0	0	0	0.33316	3	12526	12514;12526;12600		76.847	15.875	1	313700			11651	12463	9556	9567	12722;12723;12724	12723					0.11753265039237704
FLLLSIGPVP	10	Unmodified	_FLLLSIGPVP_					0	0	0		ENST00000476232.6_2_1:177993543-178000734:-|nuORF	ENST00000476232.6_2_1:177993543-178000734:-|nuORF	ENST00000476232.6_2_1:177993543-178000734:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	528.3290405273438	2	528.328611	1054.64267	0.33475	0.00017686	-0.40473	-0.00021383	-0.069982	-3.6974E-05	528.3282724916941	128.79	3.3005	127.69	127.27	130.57	-1.0933					188	66	4	0	0	0	0.39971	3	10193	10151;10193;10345		68.485	9.7027	1	235110			11652	12463	9556	9567	12725;12726;12727	12726					0.11753265039237704
FLLLSIGPVP	10	Unmodified	_FLLLSIGPVP_					0	0	0		ENST00000476232.6_2_1:177993543-178000734:-|nuORF	ENST00000476232.6_2_1:177993543-178000734:-|nuORF	ENST00000476232.6_2_1:177993543-178000734:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.3277587890625	2	528.328611	1054.64267	0.83538	0.00044135	-1.0239	-0.00054094	-0.18848	-9.9581E-05	528.3278477712166	129.01	4.1824	127.56	127.15	131.33	-1.4565					215	84	4	0	0	0	0.43592	3	12352	12352;12376;12499		63.306	4.5243	1	383740			11653	12463	9556	9567	12728;12729;12730	12728					0.11753265039237704
FLLLVQFY	8	Unmodified	_FLLLVQFY_					0	0	0		chr14:94062621-94065779|133|19.53|0.06|8.3|-|1|TE_info:L1PB1,L1PB1_dup11175,L1,LINE,donor,+,94065779,94071367|DDX24,None|93;chrX:118419411-118432781|190|10.3|0.42|4.6|+|2|TE_info:L1PB1,L1PB1_dup8380,L1,LINE,donor,-,118415804,118419411|None,WDR44|48;L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|232|2|anti-sense	chr14:94062621-94065779|133|19.53|0.06|8.3|-|1|TE_info:L1PB1,L1PB1_dup11175,L1,LINE,donor,+,94065779,94071367|DDX24,None|93	chr14:94062621-94065779|133|19.53|0.06|8.3|-|1|TE_info:L1PB1,L1PB1_dup11175,L1,LINE,donor,+,94065779,94071367|DDX24,None|93	MULTI-MSMS	OvCa99_classI_Rep5	1	521.8014526367188	2	521.802229	1041.5899	0.51257	0.00026746	-1.7717	-0.00092448	-1.2591	-0.00065702	521.8011450316328	139.31	1.8054	139.31	139.03	140.83	0					68	37	3	0	0	0	0.52992	1	16252	16252		74.517	8.6191	1	403790			11654	353	9557	9568	12731	12731					0.07077306976430009
FLLMLFLPL	9	Unmodified	_FLLMLFLPL_					0	0	0		ENST00000463422.5_1_2:85981774-86000028:+|nuORF;nc|ENSG00000168874|Q96SQ7-2|ATOH8	ENST00000463422.5_1_2:85981774-86000028:+|nuORF	ENST00000463422.5_1_2:85981774-86000028:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.3026733398438	2	553.837757	1105.66096	0.97339	0.0005391	-0.33813	-0.00018727	0.63526	0.00035183	553.8374554261103	103.31	0.6272	103.31	103.01	103.64	0					25	14	3	0	0	0	0.027462	1	11572	11572		29.842	0	1	511960			11655	12225	9558	9569	12732	12732					0.11235683689596954
FLLMVAFV	8	Unmodified	_FLLMVAFV_					0	0	0		chr11:65502393-65503121|103|15.48|0.07|7.82|+|2|MALAT1,MALAT1|1;ENST00000534336.1_1_11:65269794-65269908:+|nuORF	chr11:65502393-65503121|103|15.48|0.07|7.82|+|2|MALAT1,MALAT1|1	chr11:65502393-65503121|103|15.48|0.07|7.82|+|2|MALAT1,MALAT1|1	MULTI-MSMS	OvCa9_classI_Rep2	2	470.27197265625	2	470.27225	938.529947	-2.3445	-0.0011025	1.966	0.00092456	-0.37846	-0.00017798	470.2730881944102	145.73	1.4391	145.51	145.08	146.52	-0.22696					62	28	4	0	0	0	0.7363	1	14693	14693		33.493	8.989	1	115570			11656	299	9559	9570	12733	12733					0.05822293041535431
FLLNLAYLL	9	Unmodified	_FLLNLAYLL_					0	0	0			REV__ENSG00000106025|ENST00000222747|TSPAN12	REV__ENSG00000106025|ENST00000222747|TSPAN12	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3311767578125	2	540.328611	1078.64267	-1.2676	-0.00068491	4.0333	0.0021793	2.7657	0.0014944	540.3307152267141	139.22	4.0818	138.16	137	141.08	-1.0595					200	82	3	0	0	0	0.59983	1	11523	11523		31.955	2.8053	1	55828	+		11657	17775	9560	9571	12734	12734					0.1064926503922834
FLLNSGRFR	9	Unmodified	_FLLNSGRFR_					0	0	0			REV__tr|A0A553SFF0|A0A553SFF0_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08785PE=3SV=1	REV__tr|A0A553SFF0|A0A553SFF0_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08785PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	554.3284912109375	2	555.314358	1108.61416	1.7831	0.00099017	-3.7756	-0.0020967	-1.9926	-0.0011065	555.3122280271066	91.253	1.0566	90.017	89.742	90.799	-1.2355					33	19	2	0	0	0	0.027462	1	8083	8083		27.882	4.8398	1	42747	+		11658	29570	9561	9572	12735	12735					0.06419960182665818
FLLNSGRFR	9	Unmodified	_FLLNSGRFR_					0	0	0			REV__tr|A0A553SFF0|A0A553SFF0_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08785PE=3SV=1	REV__tr|A0A553SFF0|A0A553SFF0_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08785PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	554.3284912109375	2	555.314358	1108.61416	2.1949	0.0012189	-3.9185	-0.002176	-1.7236	-0.00095715	555.3120617258581	90.631	1.1748	89.329	88.978	90.153	-1.302					41	22	3	0	0	0	0.027462	1	8083	8083		27.882	4.8398	1	68483	+		11659	29570	9561	9572	12736	12736					0.06419960182665818
FLLNSGRFR	9	Unmodified	_FLLNSGRFR_					0	0	0			REV__tr|A0A553SFF0|A0A553SFF0_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08785PE=3SV=1	REV__tr|A0A553SFF0|A0A553SFF0_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08785PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	555.314358	1108.61416	-1.5483	-0.00085978	-0.37953	-0.00021076	-1.9278	-0.0010705	555.3138998117895	92.057	0.48797	90.033	89.737	90.225	-2.0241	-0.012349	0.0021083	NaN	20.947	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69272	+		11660	29570	9561	9572							0.06419960182665818
FLLNSGRFR	9	Unmodified	_FLLNSGRFR_					0	0	0			REV__tr|A0A553SFF0|A0A553SFF0_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08785PE=3SV=1	REV__tr|A0A553SFF0|A0A553SFF0_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08785PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	555.314358	1108.61416	-1.348	-0.00074854	-0.02167	-1.2034E-05	-1.3696	-0.00076058	555.3143196520074	91.436	0.55654	89.412	89.18	89.737	-2.0241	0.01788	0.0013241	NaN	20.947	28	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80435	+		11661	29570	9561	9572							0.06419960182665818
FLLNSGRFR	9	Unmodified	_FLLNSGRFR_					0	0	0			REV__tr|A0A553SFF0|A0A553SFF0_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08785PE=3SV=1	REV__tr|A0A553SFF0|A0A553SFF0_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08785PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	555.314358	1108.61416	-0.26082	-0.00014483	-0.89084	-0.0004947	-1.1517	-0.00063953	555.3138795868298	91.983	0.50817	89.44	89.212	89.72	-2.5425	0.046552	0.0003588	NaN	20.947	18	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100420	+		11662	29570	9561	9572							0.06419960182665818
FLLPATQIIPT	11	Unmodified	_FLLPATQIIPT_					0	0	0		ENST00000495736.1_1_7:130007740-130008435:+|nuORF;ENSG00000158525|ENST00000474905|CPA5	ENST00000495736.1_1_7:130007740-130008435:+|nuORF	ENST00000495736.1_1_7:130007740-130008435:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	607.7904052734375	2	607.363182	1212.71181	1.0874	0.00066046	-2.3561	-0.001431	-1.2687	-0.00077054	607.3621864152781	103.22	0.63058	103.22	103.05	103.69	0					26	14	3	0	0	0	0.025568	1	11570	11570		30.318	0	1	307790			11663	5958	9562	9573	12737	12737					0.11396304268123458
FLLPDRTKL	9	Unmodified	_FLLPDRTKL_					0	0	0			REV__L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|121|3|sense	REV__L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|121|3|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	551.83349609375	2	551.834591	1101.65463	-1.4468	-0.00079841	1.2828	0.00070792	-0.16398	-9.0489E-05	551.8352363148457	101.35	1.3104	99.741	99.446	100.76	-1.6053					67	24	4	0	0	0	0.44568	1	6937	6937		47.657	1.6851	1	510450	+		11664	28522	9563	9574	12738	12738					0.10786881782405544
FLLPDVIRI	9	Unmodified	_FLLPDVIRI_					0	0	0		ENSG00000107021|ENST00000372648|TBC1D13;nc|ENSG00000107021|Q9NVG8-2|TBC1D13;nc|ENSG00000107021|Q9NVG8-3|TBC1D13	ENSG00000107021|ENST00000372648|TBC1D13	ENSG00000107021|ENST00000372648|TBC1D13	MULTI-MSMS	OvCa99_classI_Rep5	1	543.3411254882812	2	543.33951	1084.66447	1.2159	0.00066066	0.83208	0.0004521	2.048	0.0011128	543.3398505063399	146.15	1.7738	146.15	145.78	147.55	0					91	35	4	0	0	0	0.13504	2	17101	17101;17125		87.696	12.872	1	1432900			11665	2582	9564	9575	12739;12740	12739					0.12552069787784603
FLLPGYYL	8	Unmodified	_FLLPGYYL_					0	0	0			REV__nc|ENSG00000232535|P0DN80|OR5H8	REV__nc|ENSG00000232535|P0DN80|OR5H8	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.7977294921875	2	493.273304	984.532055	1.2143	0.00059898	-2.8721	-0.0014167	-1.6578	-0.00081773	493.27179196723296	98.299	0.55856	98.299	98.037	98.596	0					19	12	2	0	0	0	0.028476	1	10844	10844		24.504	0	1	170140	+		11666	23384	9565	9576	12741	12741					0.03917045050991419
FLLPHPGLQV	10	Unmodified	_FLLPHPGLQV_					0	0	0		ENSG00000184743|ENST00000398868|ATL3	ENSG00000184743|ENST00000398868|ATL3	ENSG00000184743|ENST00000398868|ATL3	MULTI-MSMS	OvCa9_classI_Rep2	2	560.8287963867188	2	560.829309	1119.64407	-0.71531	-0.00040117	0.30055	0.00016856	-0.41477	-0.00023261	560.8293916252003	117.33	1.3385	117.2	116.91	118.25	-0.12868					61	26	4	0	0	0	0.24387	2	11238	11232;11238		87.754	17.254	1	140130			11667	8188	9566	9577	12742;12743	12743					0.08902899127997443
FLLPHPGLQV	10	Unmodified	_FLLPHPGLQV_					0	0	0		ENSG00000184743|ENST00000398868|ATL3	ENSG00000184743|ENST00000398868|ATL3	ENSG00000184743|ENST00000398868|ATL3	MULTI-MSMS	OvCa9_classI_Rep3	3	560.8292236328125	2	560.829309	1119.64407	-0.50151	-0.00028126	0.01668	9.3548E-06	-0.48483	-0.0002719	560.8292303204496	118.3	2.0812	117.27	116.79	118.87	-1.0324					75	41	3	0	0	0	0.26259	1	8924	8924		85.359	11.385	1	154380			11668	8188	9566	9577	12744	12744					0.08902899127997443
FLLPLELDL	9	Unmodified	_FLLPLELDL_					0	0	0		ENST00000379066.5_1_2:37501659-37501758:-|nuORF	ENST00000379066.5_1_2:37501659-37501758:-|nuORF	ENST00000379066.5_1_2:37501659-37501758:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	536.818115234375	2	536.818076	1071.6216	-1.1053	-0.00059333	1.0089	0.00054159	-0.096377	-5.1737E-05	536.8184593215832	67.034	1.4822	64.373	64.099	65.581	-2.661					79	29	4	0	0	0	0.55588	1	5251	5251		37.159	1.5408	1	1131500			11669	11117	9567	9578	12745	12745					0.08865254939701117
FLLPLRIAL	9	Unmodified	_FLLPLRIAL_					0	0	0		ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	MULTI-MSMS	OvCa99_classI_Rep5	1	528.3536987304688	2	528.35242	1054.69029	0.63518	0.0003356	0.96054	0.0005075	1.5957	0.0008431	528.3528090997949	152.24	1.9501	152.24	151.88	153.83	0					118	43	4	0	0	0	0.14739	4	17832	17809;17832;17913;17937		85.359	23.549	1	1754900			11670	5968	9568	9579	12746;12747;12748;12749	12747					0.16512964030061994
FLLQDTVEL	9	Unmodified	_FLLQDTVEL_					0	0	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10823583-10825134:-|nuORF	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-MSMS	OvCa99_classI_Rep5	1	539.3078002929688	2	539.294965	1076.57538	1.2486	0.00067336	0.98646	0.00053199	2.235	0.0012053	539.2953872871755	144.45	2.1174	144.45	144.06	146.18	0					110	43	4	0	0	0	0.049969	2	16873	16873;16879		118.74	7.4066	1	1479700			11671	2767	9569	9580	12750;12751	12750					0.04015190037625871
FLLQQNFDED	10	Unmodified	_FLLQQNFDED_					0	0	0		ENSG00000119318|ENST00000358015|RAD23B;nc|ENSG00000119318|P54727-2|RAD23B;ENST00000421404.1_1_3:18581346-18581388:+|nuORF	ENSG00000119318|ENST00000358015|RAD23B	ENSG00000119318|ENST00000358015|RAD23B	MULTI-MSMS	OvCa99_classI_Rep5	1	634.7960205078125	2	634.793318	1267.57208	2.63	0.0016695	0.45501	0.00028884	3.085	0.0019584	634.7933328392626	120.76	0.86501	120.76	120.52	121.38	0					46	19	4	0	0	0	0.3094	1	13875	13875		79.713	28.377	1	1046700			11672	3352	9570	9581	12752	12752					-0.05100104807047501
FLLQRVHSL	9	Unmodified	_FLLQRVHSL_					0	0	0		ENST00000563663.5_1_15:75137426-75165648:-|nuORF;ENST00000563829.5_1_15:75137426-75144629:-|nuORF;ENSG00000140497|ENST00000268099|SCAMP2	ENST00000563663.5_1_15:75137426-75165648:-|nuORF	ENST00000563663.5_1_15:75137426-75165648:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	556.8344116210938	2	556.832383	1111.65021	1.9321	0.0010759	-0.2721	-0.00015151	1.66	0.00092434	556.8323269126674	83.699	1.2263	83.699	83.161	84.388	0					78	28	4	0	0	0	0.059253	1	8702	8702		113.41	42.116	1	978860			11673	4849	9571	9582	12753	12753					0.09885417359510029
FLLRAGTPL	9	Unmodified	_FLLRAGTPL_					0	0	0			REV__nc|ENSG00000134571|Q14896-2|MYBPC3	REV__nc|ENSG00000134571|Q14896-2|MYBPC3	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.3020324707031	2	494.302927	986.591301	-1.9153	-0.00094676	1.6122	0.0007969	-0.30317	-0.00014986	494.3035822821236	126.59	0.78967	125.18	124.92	125.71	-1.4143					35	15	3	0	0	0	0.56889	1	12070	12070		35.618	0	1	83416	+		11674	19212	9572	9583	12754	12754					0.09746941065179726
FLLRFLSPIV	10	Unmodified	_FLLRFLSPIV_					0	0	0			REV__ENSG00000145569|ENST00000274217|OTULINL	REV__ENSG00000145569|ENST00000274217|OTULINL	MULTI-MSMS	OvCa9_classI_Rep4_	4	602.8731079101562	2	602.876259	1203.73797	0.39799	0.00023994	-4.3085	-0.0025975	-3.9105	-0.0023575	602.8736249948932	105.04	1.9216	103.03	102.69	104.61	-2.0161					116	37	5	0	0	0	0.65434	1	9582	9582		35.618	0	1	1590400	+		11675	19969	9573	9584	12755	12755					0.14424618230259512
FLLRFRAGGL	10	Unmodified	_FLLRFRAGGL_					0	0	0			REV__ENSG00000255690|ENST00000539664|TRIL	REV__ENSG00000255690|ENST00000539664|TRIL	MULTI-MSMS	OvCa9_classI_Rep3	3	575.3455200195312	2	575.3482	1148.68185	-6.2917	-0.0036199	1.4148	0.00081402	-4.8769	-0.0028059	575.3489585356984	154.97	1.0558	153.9	153.56	154.61	-1.073					68	25	4	0	0	0	0.81289	1	13364	13364		17.365	3.2278	1	137860	+		11676	23532	9574	9585	12756	12756					0.11345410113472099
FLLRGPRRREA	11	Unmodified	_FLLRGPRRREA_					0	0	0			REV__ENST00000400596.2_1_13:20134155-20134623:-|nuORF	REV__ENST00000400596.2_1_13:20134155-20134623:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	457.6078186035156	3	457.609105	1369.80549	-6.2056	-0.0028397	4.0929	0.0018729	-2.1127	-0.00096677	457.6108688134911	157.03	3.4081	155.86	154.91	158.32	-1.1707					147	80	2	0	0	0	0.72466	1	13554	13554		20.03	2.1973	1	68588	+		11677	25403	9575	9586	12757	12757					0.13537461213809365
FLLRKCSI	8	Unmodified	_FLLRKCSI_					0	0	0		ENST00000259467.8_1_9:125589062-125590833:-|nuORF	ENST00000259467.8_1_9:125589062-125590833:-|nuORF	ENST00000259467.8_1_9:125589062-125590833:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	489.2915344238281	2	490.291505	978.568457	-0.12036	-5.9011E-05	-2.5682	-0.0012592	-2.6885	-0.0013182	490.2907867176909	60.065	1.0402	57.295	56.672	57.712	-2.7702					39	19	4	0	0	0	0.028476	1	4426	4426		30.504	5.0535	1	75655			11678	9843	9576	9587	12758	12758					0.07831598676068552
FLLRLDPN	8	Unmodified	_FLLRLDPN_					0	0	0			REV__ENST00000481697.5_1_7:102389464-102389629:+|nuORF	REV__ENST00000481697.5_1_7:102389464-102389629:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.2873229980469	2	494.284734	986.554916	-0.535	-0.00026444	2.2807	0.0011273	1.7456	0.00086285	494.28576655050546	89.303	3.5068	86.701	84.473	87.979	-2.6027					118	69	2	0	0	0	0.028476	1	7426	7426		47.916	14.4	1	142340	+		11679	26484	9577	9588	12759	12759					0.06110064168467488
FLLRLDPN	8	Unmodified	_FLLRLDPN_					0	0	0			REV__ENST00000481697.5_1_7:102389464-102389629:+|nuORF	REV__ENST00000481697.5_1_7:102389464-102389629:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	494.284734	986.554916	2.0514	0.001014	-2.9211	-0.0014438	-0.86971	-0.00042988	494.28289309994574	88.166	1.5212	86.799	86.302	87.823	-1.3676	0.026107	-0.0049455	NaN	57.811	45	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88720	+		11680	26484	9577	9588							0.06110064168467488
FLLRLDPN	8	Unmodified	_FLLRLDPN_					0	0	0			REV__ENST00000481697.5_1_7:102389464-102389629:+|nuORF	REV__ENST00000481697.5_1_7:102389464-102389629:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	494.284734	986.554916	-0.64635	-0.00031948	3.2373	0.0016002	2.591	0.0012807	494.28628001041216	88.95	2.3535	86.819	86.009	88.362	-2.1309	0.045937	0.0011425	NaN	57.811	83	46	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138370	+		11681	26484	9577	9588							0.06110064168467488
FLLRPPPMTT	10	Unmodified	_FLLRPPPMTT_					0	0	0			REV__ENST00000565089.5_1_16:28943294-28944055:+|nuORF	REV__ENST00000565089.5_1_16:28943294-28944055:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	586.823974609375	2	586.828452	1171.64235	-5.6685	-0.0033265	-2.6627	-0.0015626	-8.3312	-0.004889	586.8267226357335	149.07	1.5069	148.12	147.65	149.16	-0.9512					81	29	4	0	0	0	0.71192	1	12639	12639		29.15	3.5755	1	213470	+		11682	27675	9578	9589	12760	12760					0.06339522047733226
FLLSFFVGL	9	Unmodified	_FLLSFFVGL_					0	0	0			REV__ENSG00000101846|ENST00000674429|STS	REV__ENSG00000101846|ENST00000674429|STS	MULTI-MSMS	OvCa99_classI_Rep5	1	521.8017578125	2	521.802229	1041.5899	0.51257	0.00026746	-1.7717	-0.00092448	-1.2591	-0.00065702	521.8011450316328	139.31	1.8054	139.31	139.03	140.83	0					68	37	3	0	0	0	0.34496	1	16277	16277		57.811	2.3071	1	403790	+		11683	17521	9579	9590	12761	12761					0.07077306976430009
FLLSVVVETS	10	Unmodified	_FLLSVVVETS_					0	0	0		AluJo_dup50387|chr12:53460146-53460445:-|1.0147426629805711|0.0025522745462867|8.64|429.0|16|2|anti-sense	AluJo_dup50387|chr12:53460146-53460445:-|1.0147426629805711|0.0025522745462867|8.64|429.0|16|2|anti-sense	AluJo_dup50387|chr12:53460146-53460445:-|1.0147426629805711|0.0025522745462867|8.64|429.0|16|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.3092651367188	2	547.310615	1092.60668	-0.08112	-4.4398E-05	-0.77435	-0.00042381	-0.85547	-0.00046821	547.3100262915397	112.23	1.4754	110.72	110.26	111.74	-1.5111					81	28	4	0	0	0	0.50656	1	10356	10356		53.351	0	1	212230			11684	67	9580	9591	12762	12762					0.06407763071729278
FLLSVVVETS	10	Unmodified	_FLLSVVVETS_					0	0	0		AluJo_dup50387|chr12:53460146-53460445:-|1.0147426629805711|0.0025522745462867|8.64|429.0|16|2|anti-sense	AluJo_dup50387|chr12:53460146-53460445:-|1.0147426629805711|0.0025522745462867|8.64|429.0|16|2|anti-sense	AluJo_dup50387|chr12:53460146-53460445:-|1.0147426629805711|0.0025522745462867|8.64|429.0|16|2|anti-sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	547.310615	1092.60668	0.30465	0.00016674	-0.81937	-0.00044845	-0.51472	-0.00028171	547.3100255571256	110.94	1.4297	110.8	110.39	111.82	-0.13961	0.040583	0.00039944	NaN	53.351	81	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143500			11685	67	9580	9591							0.06407763071729278
FLLSVVVETS	10	Unmodified	_FLLSVVVETS_					0	0	0		AluJo_dup50387|chr12:53460146-53460445:-|1.0147426629805711|0.0025522745462867|8.64|429.0|16|2|anti-sense	AluJo_dup50387|chr12:53460146-53460445:-|1.0147426629805711|0.0025522745462867|8.64|429.0|16|2|anti-sense	AluJo_dup50387|chr12:53460146-53460445:-|1.0147426629805711|0.0025522745462867|8.64|429.0|16|2|anti-sense	MULTI-MATCH	OvCa9_classI_Rep3	3		2	547.310615	1092.60668	1.198	0.0006557	-1.8002	-0.00098524	-0.60211	-0.00032954	547.3095101986137	111.87	1.1341	110.76	110.45	111.58	-1.1038	0.0032503	-0.00067414	NaN	53.351	71	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174990			11686	67	9580	9591							0.06407763071729278
FLLTSTLSLV	10	Unmodified	_FLLTSTLSLV_					0	0	0		tr|A0A553SFJ7|A0A553SFJ7_NIACISodium:protonantiporterOS=NialliacirculansOX=1397GN=CEQ21_08965PE=4SV=1	tr|A0A553SFJ7|A0A553SFJ7_NIACISodium:protonantiporterOS=NialliacirculansOX=1397GN=CEQ21_08965PE=4SV=1	tr|A0A553SFJ7|A0A553SFJ7_NIACISodium:protonantiporterOS=NialliacirculansOX=1397GN=CEQ21_08965PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	547.326904296875	2	547.328808	1092.64306	-0.1345	-7.3618E-05	-2.9668	-0.0016238	-3.1013	-0.0016974	547.3271925205654	93.792	1.8234	92.692	92.225	94.048	-1.0995					97	35	4	0	0	0	0.45225	1	8371	8371		60.972	0	1	1121100			11687	33043	9581	9592	12763	12763					0.10044639968418778
FLLVFCFL	8	Unmodified	_FLLVFCFL_					0	0	0			REV__ENSG00000220008|ENST00000698372|LINGO3	REV__ENSG00000220008|ENST00000698372|LINGO3	MULTI-MSMS	OvCa99_classI_Rep5	1	501.2827453613281	2	501.280075	1000.5456	2.1077	0.0010565	-1.9001	-0.00095249	0.20757	0.00010405	501.27909599944326	137.47	0.38664	137.47	137.26	137.64	0					13	7	2	0	0	0	0.7363	1	16040	16040		33.493	0	1	51217	+		11688	23334	9582	9593	12764	12764					0.04534579558583118
FLLVVRAPG	9	Unmodified	_FLLVVRAPG_					0	0	0			REV__ENST00000374023.7_2_6:34555964-34556354:-|nuORF	REV__ENST00000374023.7_2_6:34555964-34556354:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.7422790527344	2	486.30547	970.596387	-0.32332	-0.00015723	1.3068	0.00063548	0.98344	0.00047825	486.3049855115757	46.805	0.35944	43.733	43.501	43.86	-3.0724					9	6	2	0	0	0	0.027462	1	2459	2459		33.516	8.0654	1	11847	+		11689	25055	9583	9594	12765	12765					0.10991244927799926
FLLYLVAAITL	11	Unmodified	_FLLYLVAAITL_					0	0	0			REV__ENST00000559667.2_1_15:45795141-45814405:-|nuORF	REV__ENST00000559667.2_1_15:45795141-45814405:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	412.9258728027344	3	412.924925	1235.75295	3.0705	0.0012679	1.8872	0.00077926	4.9577	0.0020472	412.9250835867229	57.228	1.0137	54.078	53.461	54.475	-3.1504					42	32	2	0	0	0	0.72511	1	1675	1675		14.086	0	1	24423	+		11690	17648	9584	9595	12766	12766					0.1445006530759656
FLLYQQAQIL	10	Unmodified	_FLLYQQAQIL_					0	0	0			REV__PET112-FAM160A1|1|fusion	REV__PET112-FAM160A1|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	619.3179321289062	2	618.852981	1235.69141	1.8716	0.0011583	-0.050814	-3.1446E-05	1.8208	0.0011268	618.8528358620456	108.48	0.77888	108.48	108.24	109.02	0					48	17	4	0	0	0	0.026871	1	12296	12296		45.952	14.422	1	1386200	+		11691	29287	9585	9596	12767	12767					0.08299133608329612
FLLYQQAQIL	10	Unmodified	_FLLYQQAQIL_					0	0	0			REV__PET112-FAM160A1|1|fusion	REV__PET112-FAM160A1|1|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	618.852981	1235.69141	-0.47361	-0.00029309	0.70078	0.00043368	0.22717	0.00014059	618.8532714502905	108.46	0.64278	108.23	108.07	108.72	-0.22498	-0.1383	0.0013286	NaN	45.952	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28246	+		11692	29287	9585	9596							0.08299133608329612
FLLYQQAQIL	10	Unmodified	_FLLYQQAQIL_					0	0	0			REV__PET112-FAM160A1|1|fusion	REV__PET112-FAM160A1|1|fusion	MULTI-MATCH	OvCa9_classI_Rep3	3		2	618.852981	1235.69141	0.86382	0.00053458	-1.3516	-0.00083647	-0.48782	-0.00030189	618.8520715707497	109.5	0.52506	108.36	108.14	108.66	-1.1444	-0.012437	-0.0012117	NaN	45.952	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29842	+		11693	29287	9585	9596							0.08299133608329612
FLLYQQAQIL	10	Unmodified	_FLLYQQAQIL_					0	0	0			REV__PET112-FAM160A1|1|fusion	REV__PET112-FAM160A1|1|fusion	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	618.852981	1235.69141	0.77951	0.0004824	-1.0181	-0.00063008	-0.23864	-0.00014768	618.8522494270378	110	0.73732	108.4	108.12	108.86	-1.6011	0.035083	-0.0007989	NaN	45.952	23	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24694	+		11694	29287	9585	9596							0.08299133608329612
FLLYTIHNP	9	Unmodified	_FLLYTIHNP_					0	0	0		ENSG00000203837|ENST00000369230|PNLIPRP3	ENSG00000203837|ENST00000369230|PNLIPRP3	ENSG00000203837|ENST00000369230|PNLIPRP3	MULTI-MSMS	OvCa99_classI_Rep5	1	559.8036499023438	2	559.305667	1116.59678	1.4445	0.00080789	3.9287	0.0021974	5.3732	0.0030052	559.8092706804548	142.48	0.54892	142.48	142.23	142.78	0					19	10	3	0	0	0	0.27001	1	16659	16659		66.429	0.6261	1	234370			11695	8935	9586	9597	12768	12768					0.04314619856972968
FLMAVFAVF	9	Unmodified	_FLMAVFAVF_					0	0	0			REV__tr|A0A7D6VNZ3|A0A7D6VNZ3_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_20965PE=4SV=1	REV__tr|A0A7D6VNZ3|A0A7D6VNZ3_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_20965PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	522.779541015625	2	522.782982	1043.55141	0.39679	0.00020743	-1.4548	-0.00076053	-1.058	-0.0005531	522.7822094851732	158.2	0.69345	158.2	157.96	158.65	0					25	14	3	0	0	0	0.42921	1	18536	18536		49.211	8.6382	1	61641	+		11696	31216	9587	9598	12769	12769					0.03137678070243055
FLMEKLWVT	9	Unmodified	_FLMEKLWVT_					0	0	0			REV__ENSG00000171049|ENST00000340023|FPR2	REV__ENSG00000171049|ENST00000340023|FPR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.288818359375	2	583.817553	1165.62055	-1.0341	-0.00060375	-4.2916	-0.0025055	-5.3258	-0.0031093	583.8149473863361	103.56	1.0977	103.56	103.18	104.28	0					45	25	3	0	0	0	0.027433	1	11561	11561		64.207	9.431	1	1566800	+		11697	21587	9588	9599	12770	12770					0.044367172991314874
FLMFLIIVL	9	Unmodified	_FLMFLIIVL_					0	0	0		tr|A0A553SH38|A0A553SH38_NIACISulPfamilyinorganicaniontransporterOS=NialliacirculansOX=1397GN=CEQ21_12060PE=4SV=1	tr|A0A553SH38|A0A553SH38_NIACISulPfamilyinorganicaniontransporterOS=NialliacirculansOX=1397GN=CEQ21_12060PE=4SV=1	tr|A0A553SH38|A0A553SH38_NIACISulPfamilyinorganicaniontransporterOS=NialliacirculansOX=1397GN=CEQ21_12060PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.7697143554688	2	554.845582	1107.67661	-1.8313	-0.0010161	4.4801	0.0024858	2.6488	0.0014697	554.8478931342516	107.81	0.57687	105.93	105.79	106.36	-1.8785					20	11	2	0	0	0	0.02744	1	9838	9838		60.404	21.382	1	28507			11698	33233	9589	9600	12771	12771					0.12707970206633945
FLMGGRRMTA	10	Oxidation (M)	_FLMGGRRM(Oxidation (M))TA_		FLMGGRRM(1)TA		FLM(-38)GGRRM(38)TA	0	0	1		ENSG00000256870|ENST00000536262|SLC5A8	ENSG00000256870|ENST00000536262|SLC5A8	ENSG00000256870|ENST00000536262|SLC5A8	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.2899169921875	2	578.291711	1154.56887	-7.0222	-0.0040609	3.9241	0.0022693	-3.0981	-0.0017916	578.293831134244	164.09	0.43207	162.46	162.1	162.53	-1.6336					20	10	2	0	0	0	0.50656	1	16208	16208		53.351	12.779	2	95513			11699	9467	9590	9601	12772	12772		283			-0.002233496664075574
FLMGPLNLTL	10	Unmodified	_FLMGPLNLTL_					0	0	0		nc|ENSG00000133863|Q9BXT5|TEX15;ENSG00000133863|ENST00000643185|TEX15	nc|ENSG00000133863|Q9BXT5|TEX15	nc|ENSG00000133863|Q9BXT5|TEX15	MULTI-MSMS	OvCa99_classI_Rep5	1	559.8178100585938	2	559.817553	1117.62055	1.1031	0.00061756	-3.0919	-0.0017309	-1.9888	-0.0011134	559.8157329084277	160.29	2.9539	160.29	159.57	162.53	0					135	58	4	0	0	0	0.034256	2	18798	18798;18822		134.81	23.162	1	827610			11700	4241	9591	9602	12773;12774	12773					0.06644717299150216
FLMKLQSLL	9	Unmodified	_FLMKLQSLL_					0	0	0		ENSG00000144635|ENST00000273130|DYNC1LI1	ENSG00000144635|ENST00000273130|DYNC1LI1	ENSG00000144635|ENST00000273130|DYNC1LI1	MULTI-MSMS	OvCa99_classI_Rep5	1	546.8300170898438	2	546.827921	1091.64129	1.8091	0.00098928	0.49784	0.00027223	2.307	0.0012615	546.8279279692982	133.75	0.94135	133.75	133.4	134.34	0					39	19	3	0	0	0	0.11471	2	15556	15552;15556		93.195	15.811	1	214850			11701	5166	9592	9603	12775;12776	12776					0.09913307678834826
FLMLFKKI	8	Unmodified	_FLMLFKKI_					0	0	0			REV__tr|A0A7D6VX51|A0A7D6VX51_9CLOTC40familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06950PE=3SV=1	REV__tr|A0A7D6VX51|A0A7D6VX51_9CLOTC40familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06950PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.7857666015625	2	520.322274	1038.63	0.77742	0.00040451	1.5043	0.00078273	2.2817	0.0011872	520.3230245373245	143.82	0.59421	143.82	143.41	144.01	0					15	11	2	0	0	0	0.028476	1	16792	16792		46.766	11.566	1	32030	+		11702	31764	9593	9604	12777	12777					0.11222530375334827
FLMNEVIKL	9	Unmodified	_FLMNEVIKL_					0	0	0		ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	MULTI-MSMS	OvCa99_classI_Rep5	1	553.818359375	2	553.817553	1105.62055	1.7496	0.00096893	0.45856	0.00025396	2.2081	0.0012229	553.8175410940648	127.75	1.0232	127.75	127.54	128.56	0					44	21	3	0	0	0	0.094791	1	14796	14796		98.582	10.886	1	437460			11703	8804	9594	9605	12778	12778					0.07196717299143529
FLMNIIDKF	9	Unmodified	_FLMNIIDKF_					0	0	0			REV__ENST00000532107.2_1_14:51374946-51378571:-|nuORF	REV__ENST00000532107.2_1_14:51374946-51378571:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	570.812255859375	2	570.809728	1139.6049	1.5323	0.00087466	-0.83061	-0.00047412	0.7017	0.00040053	570.8086834763288	127.4	0.81213	127.4	127.18	128	0					35	17	3	0	0	0	0.24951	1	14756	14756		68.787	5.4806	1	335820	+		11704	17424	9595	9606	12779	12779					0.0406843078210386
FLMPLSRRP	9	Unmodified	_FLMPLSRRP_					0	0	0			REV__nc|ENSG00000119630|P49763|PGF	REV__nc|ENSG00000119630|P49763|PGF	MULTI-MSMS	OvCa99_classI_Rep5	1	558.8240356445312	2	558.820961	1115.62737	1.733	0.00096846	3.8841	0.0021705	5.6172	0.003139	558.8229594051423	149.72	0.60114	149.72	149.44	150.05	0					19	11	2	0	0	0	0.5811	1	17525	17525		34.173	8.5985	1	66426	+		11705	28815	9596	9607	12780	12780					0.07418074970382804
FLMVCFAGF	9	Unmodified	_FLMVCFAGF_					0	0	0		ENSG00000164038|ENST00000394785|SLC9B2	ENSG00000164038|ENST00000394785|SLC9B2	ENSG00000164038|ENST00000394785|SLC9B2	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.7718505859375	2	517.745542	1033.47653	-0.078467	-4.0626E-05	-4.4186	-0.0022877	-4.497	-0.0023283	517.7430003918245	63.025	0.3195	63.025	62.86	63.179	0					12	7	2	0	0	0	0.027462	1	5646	5646		21.702	4.9974	1	243790			11706	6395	9597	9608	12781	12781					-0.038868277326173484
FLMVCLLFLF	10	Unmodified	_FLMVCLLFLF_					0	0	0		ENST00000481551.5_1_7:92165699-92165855:+|nuORF	ENST00000481551.5_1_7:92165699-92165855:+|nuORF	ENST00000481551.5_1_7:92165699-92165855:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	622.8187255859375	2	623.342349	1244.67015	0.82977	0.00051723	-3.6958	-0.0023038	-2.8661	-0.0017865	623.3398671964557	150.65	0.65236	150.65	150.44	151.09	0					18	12	2	0	0	0	0.027007	1	17613	17613		26.796	3.7536	1	45679			11707	12548	9598	9609	12782	12782					0.05759708983600831
FLMYVILI	8	Unmodified	_FLMYVILI_					0	0	0			REV__nc|ENSG00000141837|O00555-5|CACNA1A	REV__nc|ENSG00000141837|O00555-5|CACNA1A	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.7762145996094	2	506.301007	1010.58746	-0.46627	-0.00023607	0.25665	0.00012994	-0.20962	-0.00010613	506.3008199100744	55.324	0.2871	55.324	55.193	55.48	0					9	6	2	0	0	0	0.028476	1	4516	4516		24.504	7.139	1	188910	+		11708	28898	9599	9610	12783	12783					0.08259135247112681
FLNDEVWNL	9	Unmodified	_FLNDEVWNL_					0	0	0		ENST00000452420.5_1_21:34968037-34971579:-|nuORF;ENST00000437996.5_1_21:34962130-34971579:-|nuORF;CRYZL1|p.E309Rfs*18|1|0.06|ENSG00000205758|chr21:33591187-33591188|-/GAACTCCTGATCT|frameshift_variant;ENSG00000205758|ENST00000381554|CRYZL1	ENST00000452420.5_1_21:34968037-34971579:-|nuORF	ENST00000452420.5_1_21:34968037-34971579:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	575.2841796875	2	575.282389	1148.55022	1.07	0.00061558	1.7459	0.0010044	2.8159	0.0016199	575.2830526874005	146.3	1.8139	146.3	145.93	147.74	0					95	36	4	0	0	0	0.049969	3	17119	17098;17119;17142		118.74	24.999	1	1068300			11709	683	9600	9611	12784;12785;12786	12785					-0.01810864764956932
FLNEKEELKL	10	Unmodified	_FLNEKEELKL_					0	0	0		tr|A0A553SFJ1|A0A553SFJ1_NIACIOligopeptidaseFOS=NialliacirculansOX=1397GN=pepFPE=3SV=1	tr|A0A553SFJ1|A0A553SFJ1_NIACIOligopeptidaseFOS=NialliacirculansOX=1397GN=pepFPE=3SV=1	tr|A0A553SFJ1|A0A553SFJ1_NIACIOligopeptidaseFOS=NialliacirculansOX=1397GN=pepFPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	631.8303833007812	2	631.853178	1261.6918	-0.74701	-0.000472	-1.3144	-0.0008305	-2.0614	-0.0013025	631.852472755568	95.906	0.4483	94.878	94.664	95.113	-1.0281					15	8	2	0	0	0	0.026519	1	8640	8640		78.264	8.6362	1	19608			11710	33041	9601	9612	12787	12787					0.07142508537504
FLNGKGMALV	10	Unmodified	_FLNGKGMALV_					0	0	0			REV__ZFHX4|p.P257Gfs*32|1|0.04|ENSG00000091656|chr8:76704855-76704856|-/GGGCAGAATGCACAGACTGGGGCAAATAG|frameshift_variant	REV__ZFHX4|p.P257Gfs*32|1|0.04|ENSG00000091656|chr8:76704855-76704856|-/GGGCAGAATGCACAGACTGGGGCAAATAG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2390747070312	2	525.294245	1048.57394	0.96965	0.00050935	-1.0344	-0.00054337	-0.064768	-3.4022E-05	525.2939059300218	109.4	0.98344	109.4	109.19	110.18	0					42	21	4	0	0	0	0.026802	1	12463	12463		42.396	20.436	1	317730	+		11711	32768	9602	9613	12788	12788					0.05159277467851098
FLNIFGAK	8	Unmodified	_FLNIFGAK_					0	0	0		tr|A0A7D6W0M1|A0A7D6W0M1_9CLOTRNA-bindingproteinKhpBOS=ClostridiumintestinaleOX=36845GN=khpBPE=3SV=1	tr|A0A7D6W0M1|A0A7D6W0M1_9CLOTRNA-bindingproteinKhpBOS=ClostridiumintestinaleOX=36845GN=khpBPE=3SV=1	tr|A0A7D6W0M1|A0A7D6W0M1_9CLOTRNA-bindingproteinKhpBOS=ClostridiumintestinaleOX=36845GN=khpBPE=3SV=1	MSMS	OvCa99_classI_Rep5	1	455.26544189453125	2	455.263271	908.511988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.897	1	23.897	23.397	24.397	0								0	0	0	0.30129	1	385	385		19.36	2.655	1				11712	35381	9603	9614	12789	12789					0.054072941110462125
FLNIIANQV	9	Unmodified	_FLNIIANQV_					0	0	0			REV__tr|A0A553SFU4|A0A553SFU4_NIACIPhosphatasePAP2familyproteinOS=NialliacirculansOX=1397GN=CEQ21_09515PE=4SV=1	REV__tr|A0A553SFU4|A0A553SFU4_NIACIPhosphatasePAP2familyproteinOS=NialliacirculansOX=1397GN=CEQ21_09515PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.78173828125	2	516.297842	1030.58113	2.4814	0.0012811	-3.3454	-0.0017272	-0.86399	-0.00044608	516.2960106242838	112.3	0.83762	111.22	110.72	111.55	-1.0835					22	16	2	0	0	0	0.027441	1	8183	8183		37.159	6.6555	1	20350	+		11713	29623	9604	9615	12790	12790					0.06706333339934645
FLNKEITSV	9	Unmodified	_FLNKEITSV_					0	0	0		ENST00000475582.5_1_2:27590224-27590551:-|nuORF;nc|ENSG00000115211|Q9UI10-3|EIF2B4;ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4	ENST00000475582.5_1_2:27590224-27590551:-|nuORF	ENST00000475582.5_1_2:27590224-27590551:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	525.7967529296875	2	525.795132	1049.57571	1.8561	0.00097593	0.48503	0.00025503	2.3411	0.001231	525.7952939975502	82.313	1.1377	82.313	81.854	82.992	0					46	26	2	0	0	0	0.094791	1	8527	8527		98.582	13.223	1	2002400			11714	3069	9605	9616	12791	12791					0.05290609757457787
FLNKEITSV	9	Unmodified	_FLNKEITSV_					0	0	0		ENST00000475582.5_1_2:27590224-27590551:-|nuORF;nc|ENSG00000115211|Q9UI10-3|EIF2B4;ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4	ENST00000475582.5_1_2:27590224-27590551:-|nuORF	ENST00000475582.5_1_2:27590224-27590551:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	525.795132	1049.57571	-0.83035	-0.00043659	1.4078	0.00074023	0.57749	0.00030364	525.7957422675925	83.898	1.2173	82.352	81.784	83.001	-1.5462	-0.021311	0.00050037	NaN	98.582	41	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52564			11715	3069	9605	9616							0.05290609757457787
FLNKEITSV	9	Unmodified	_FLNKEITSV_					0	0	0		ENST00000475582.5_1_2:27590224-27590551:-|nuORF;nc|ENSG00000115211|Q9UI10-3|EIF2B4;ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4	ENST00000475582.5_1_2:27590224-27590551:-|nuORF	ENST00000475582.5_1_2:27590224-27590551:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	525.795132	1049.57571	-1.6005	-0.00084155	2.1666	0.0011392	0.56603	0.00029761	525.7960014828461	84.715	0.97406	82.454	82.02	82.994	-2.261	0.080854	0.0012982	NaN	98.582	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85814			11716	3069	9605	9616							0.05290609757457787
FLNKEITSV	9	Unmodified	_FLNKEITSV_					0	0	0		ENST00000475582.5_1_2:27590224-27590551:-|nuORF;nc|ENSG00000115211|Q9UI10-3|EIF2B4;ENSG00000115211|ENST00000347454|EIF2B4;nc|ENSG00000115211|Q9UI10-2|EIF2B4	ENST00000475582.5_1_2:27590224-27590551:-|nuORF	ENST00000475582.5_1_2:27590224-27590551:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	525.795132	1049.57571	0.68084	0.00035798	-0.02371	-1.2466E-05	0.65713	0.00034552	525.7949346035463	85.02	0.63537	82.374	82.12	82.755	-2.6463	0.00086953	-0.001005	NaN	98.582	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70837			11717	3069	9605	9616							0.05290609757457787
FLNKLVILV	9	Unmodified	_FLNKLVILV_					0	0	0		ENSG00000168918|ENST00000445964|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;nc|ENSG00000168918|Q92835-3|INPP5D	ENSG00000168918|ENST00000445964|INPP5D	ENSG00000168918|ENST00000445964|INPP5D	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2383422851562	2	529.852253	1057.68995	0.98215	0.0005204	1.3628	0.00072211	2.345	0.0012425	529.8527884735163	132.6	0.89706	132.6	132.23	133.13	0					49	18	4	0	0	0	0.027462	1	15407	15407		55.504	23.549	1	244740			11718	6956	9606	9617	12792	12792					0.16341544310193967
FLNKWMKI	8	Unmodified	_FLNKWMKI_					0	0	0		ENST00000226299.8_1_4:17609204-17609297:+|nuORF	ENST00000226299.8_1_4:17609204-17609297:+|nuORF	ENST00000226299.8_1_4:17609204-17609297:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3095703125	2	540.307155	1078.59976	1.25	0.00067539	1.4342	0.00077491	2.6842	0.0014503	540.3077955858466	119.23	3.2776	118.2	117.78	121.06	-1.0271					179	64	5	0	0	0	0.62934	1	9132	9132		57.811	9.8518	1	415420			11719	9706	9607	9618	12793	12793					0.06360171710139184
FLNNASGREKD	11	Unmodified	_FLNNASGREKD_					0	0	0		nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.E3356Afs*12|1|0.31|ENSG00000151914|chr6:56535225-56535226|-/CCAG|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;DST|p.A2546Pfs*8|1|0.39|ENSG00000151914|chr6:56560327-56560327|C/-|frameshift_variant	nc|ENSG00000151914|Q03001|DST	nc|ENSG00000151914|Q03001|DST	MULTI-MSMS	OvCa99_classI_Rep5	1	417.5434265136719	3	417.542314	1249.60511	0.35282	0.00014732	2.178	0.0009094	2.5308	0.0010567	417.54321104038945	30.1	1.2423	30.1	29.785	31.027	0					74	24	4	0	0	0	0.71191	1	1123	1123		28.577	4.0575	1	244660			11720	5594	9608	9619	12794	12794					-0.009704779643470829
FLNNQEYVL	9	Unmodified	_FLNNQEYVL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OvCa9_classI_Rep2	2	570.2898559570312	2	570.290214	1138.56587	-2.1859	-0.0012466	2.3623	0.0013472	0.17642	0.00010061	570.2913769953735	118.87	1.3845	118.72	118.33	119.72	-0.14755					75	27	4	0	0	0	0.24951	2	11422	11422;11428		68.787	7.8149	1	143160			11721	3083	9609	9620	12795;12796	12795					0.0021342175209611014
FLNSAPLFPI	10	Unmodified	_FLNSAPLFPI_					0	0	0			REV__nc|ENSG00000125247|Q5T4D3-2|TMTC4	REV__nc|ENSG00000125247|Q5T4D3-2|TMTC4	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.8164672851562	2	559.815867	1117.61718	3.9956	0.0022368	-4.2464	-0.0023772	-0.25077	-0.00014038	559.813249709843	134.7	2.6126	133.16	132.47	135.08	-1.5437					137	52	4	0	0	0	0.46756	1	13068	13068		58.782	0	1	191680	+		11722	18715	9610	9621	12797	12797					0.06307790516780187
FLNSEIHQV	9	Unmodified	_FLNSEIHQV_					0	0	0		nc|ENSG00000095383|Q9BYX2-3|TBC1D2;nc|ENSG00000095383|Q9BYX2-2|TBC1D2;ENSG00000095383|ENST00000465784|TBC1D2;nc|ENSG00000095383|Q9BYX2-4|TBC1D2;nc|ENSG00000095383|Q9BYX2-6|TBC1D2;nc|ENSG00000095383|Q9BYX2-5|TBC1D2	nc|ENSG00000095383|Q9BYX2-3|TBC1D2	nc|ENSG00000095383|Q9BYX2-3|TBC1D2	MULTI-MSMS	OvCa99_classI_Rep5	1	543.7838134765625	2	543.782556	1085.55056	1.5014	0.00081641	0.16822	9.1476E-05	1.6696	0.00090789	543.7826455829073	78.893	0.65034	78.893	78.625	79.276	0					39	15	4	0	0	0	0.046778	1	8022	8022		120.87	38.118	1	1795300			11723	1927	9611	9622	12798	12798					0.011205549548776617
FLNSEIHQV	9	Unmodified	_FLNSEIHQV_					0	0	0		nc|ENSG00000095383|Q9BYX2-3|TBC1D2;nc|ENSG00000095383|Q9BYX2-2|TBC1D2;ENSG00000095383|ENST00000465784|TBC1D2;nc|ENSG00000095383|Q9BYX2-4|TBC1D2;nc|ENSG00000095383|Q9BYX2-6|TBC1D2;nc|ENSG00000095383|Q9BYX2-5|TBC1D2	nc|ENSG00000095383|Q9BYX2-3|TBC1D2	nc|ENSG00000095383|Q9BYX2-3|TBC1D2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	543.782556	1085.55056	-0.048934	-2.6609E-05	-0.71088	-0.00038656	-0.75981	-0.00041317	543.7821144368457	80.407	1.2949	78.712	78.173	79.468	-1.6951	0.080876	-0.00069112	NaN	120.87	63	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127310			11724	1927	9611	9622							0.011205549548776617
FLNSEIHQV	9	Unmodified	_FLNSEIHQV_					0	0	0		nc|ENSG00000095383|Q9BYX2-3|TBC1D2;nc|ENSG00000095383|Q9BYX2-2|TBC1D2;ENSG00000095383|ENST00000465784|TBC1D2;nc|ENSG00000095383|Q9BYX2-4|TBC1D2;nc|ENSG00000095383|Q9BYX2-6|TBC1D2;nc|ENSG00000095383|Q9BYX2-5|TBC1D2	nc|ENSG00000095383|Q9BYX2-3|TBC1D2	nc|ENSG00000095383|Q9BYX2-3|TBC1D2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	543.782556	1085.55056	-0.20985	-0.00011411	-0.071949	-3.9124E-05	-0.2818	-0.00015324	543.7822970480908	80.822	1.4765	78.5	78.131	79.608	-2.3226	-0.1315	3.7521E-06	NaN	120.87	82	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250900			11725	1927	9611	9622							0.011205549548776617
FLNSEIHQV	9	Unmodified	_FLNSEIHQV_					0	0	0		nc|ENSG00000095383|Q9BYX2-3|TBC1D2;nc|ENSG00000095383|Q9BYX2-2|TBC1D2;ENSG00000095383|ENST00000465784|TBC1D2;nc|ENSG00000095383|Q9BYX2-4|TBC1D2;nc|ENSG00000095383|Q9BYX2-6|TBC1D2;nc|ENSG00000095383|Q9BYX2-5|TBC1D2	nc|ENSG00000095383|Q9BYX2-3|TBC1D2	nc|ENSG00000095383|Q9BYX2-3|TBC1D2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	543.782556	1085.55056	-1.3133	-0.00071417	0.46654	0.0002537	-0.8468	-0.00046048	543.7827321770576	81.131	1.3113	78.42	78.15	79.461	-2.7106	-0.21129	0.00058939	NaN	120.87	49	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	266470			11726	1927	9611	9622							0.011205549548776617
FLNYLFKTL	9	Unmodified	_FLNYLFKTL_					0	0	0		tr|A0A7D6VTU4|A0A7D6VTU4_9CLOTAspartate--tRNA(Asp/Asn)ligaseOS=ClostridiumintestinaleOX=36845GN=aspSPE=3SV=1	tr|A0A7D6VTU4|A0A7D6VTU4_9CLOTAspartate--tRNA(Asp/Asn)ligaseOS=ClostridiumintestinaleOX=36845GN=aspSPE=3SV=1	tr|A0A7D6VTU4|A0A7D6VTU4_9CLOTAspartate--tRNA(Asp/Asn)ligaseOS=ClostridiumintestinaleOX=36845GN=aspSPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	579.8309936523438	2	579.831517	1157.64848	-1.0511	-0.00060945	-2.1835	-0.0012661	-3.2346	-0.0018755	579.8299758143447	59.629	0.66566	59.629	59.414	60.079	0					40	16	4	0	0	0	0.31747	1	5156	5156		60.972	4.2509	1	2166300			11727	35145	9612	9623	12799	12799					0.07596363550896967
FLPDPSALQNL	11	Unmodified	_FLPDPSALQNL_					0	0	0		nc|ENSG00000158019|Q9NXR7-4|BABAM2;nc|ENSG00000158019|Q9NXR7-3|BABAM2;ENSG00000158019|ENST00000379624|BABAM2;nc|ENSG00000158019|Q9NXR7-1|BABAM2	nc|ENSG00000158019|Q9NXR7-4|BABAM2	nc|ENSG00000158019|Q9NXR7-4|BABAM2	MULTI-MSMS	OvCa99_classI_Rep5	1	607.8253784179688	2	607.824421	1213.63429	0.80608	0.00048995	1.6793	0.0010207	2.4854	0.0015107	607.8251557533721	141.21	0.7552	141.21	140.88	141.64	0					30	14	3	0	0	0	0.54737	1	16487	16487		56.434	13.57	1	125160			11728	5924	9613	9624	12800	12800					0.03601666331951492
FLPEPLKPQ	9	Unmodified	_FLPEPLKPQ_					0	0	0		nc|ENSG00000159082|O43426-4|SYNJ1;ENSG00000159082|ENST00000674351|SYNJ1;nc|ENSG00000159082|O43426|SYNJ1	nc|ENSG00000159082|O43426-4|SYNJ1	nc|ENSG00000159082|O43426-4|SYNJ1	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.7901611328125	2	534.808042	1067.60153	0.13865	7.4151E-05	2.084	0.0011145	2.2226	0.0011887	534.8092235198142	62.184	1.9061	62.184	61.826	63.732	0					74	46	3	0	0	0	0.027461	1	5568	5568		40.778	11.629	1	1522600			11729	5985	9614	9625	12801	12801					0.07043503999739187
FLPFHLMLC	9	Carbamidomethyl (C),Oxidation (M)	_FLPFHLM(Oxidation (M))LC(Carbamidomethyl (C))_	FLPFHLMLC(1)	FLPFHLM(1)LC	FLPFHLMLC(49)	FLPFHLM(49)LC	0	1	1		ENST00000293604.10_1_6:30620706-30620838:+|nuORF	ENST00000293604.10_1_6:30620706-30620838:+|nuORF	ENST00000293604.10_1_6:30620706-30620838:+|nuORF	MSMS	OvCa99_classI_Rep5	1	597.2974853515625	2	597.29593	1192.57731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	131.64	1	131.64	131.14	132.14	0								0	0	0	0.17074	1	15289	15289		49.211	12.764	1				11730	10108	9615	9626	12802	12802	102	290			-0.011277957497668467
FLPGDAPVFQI	11	Unmodified	_FLPGDAPVFQI_					0	0	0			REV__ENST00000494072.3_3_1:19186098-19209913:-|nuORF	REV__ENST00000494072.3_3_1:19186098-19209913:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	603.3062133789062	2	602.324057	1202.63356	1.8049	0.0010871	-2.996	-0.0018046	-1.1911	-0.00071745	602.3222155455755	112.36	0.36716	112.36	112.11	112.48	0					12	7	2	0	0	0	0.025406	1	12798	12798		63.534	32.965	1	127960	+		11731	20614	9616	9627	12803	12803					0.040348716828930264
FLPIIVLD	8	Unmodified	_FLPIIVLD_					0	0	0			REV__tr|A0A7D6VUU4|A0A7D6VUU4_9CLOTProbablecytosolaminopeptidaseOS=ClostridiumintestinaleOX=36845GN=pepAPE=3SV=1	REV__tr|A0A7D6VUU4|A0A7D6VUU4_9CLOTProbablecytosolaminopeptidaseOS=ClostridiumintestinaleOX=36845GN=pepAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.2973327636719	2	465.288954	928.563355	-1.3422	-0.00062451	-2.7557	-0.0012822	-4.0979	-0.0019067	465.28756765365847	106.86	0.89349	104.99	104.64	105.54	-1.8785					25	16	2	0	0	0	0.028476	1	9774	9774		49.211	2.4444	1	40120	+		11732	31695	9617	9628	12804	12804					0.09621618085077444
FLPKEYVK	8	Unmodified	_FLPKEYVK_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.D1277Afs*54|1|0.12|ENSG00000137076|chr9:35711644-35711645|-/G|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.3016357421875	2	512.29731	1022.58007	1.9169	0.00098201	-2.3977	-0.0012283	-0.4808	-0.00024631	512.2964471219467	102.95	0.75249	102.95	102.63	103.39	0					28	17	2	0	0	0	0.028476	1	11467	11467		31.955	0	1	1284000			11733	4552	9618	9629	12805	12805					0.0696811897103089
FLPKVGLRD	9	Unmodified	_FLPKVGLRD_					0	0	0			REV__tr|A0A553SFQ2|A0A553SFQ2_NIACIasparaginesynthase(glutamine-hydrolyzing)OS=NialliacirculansOX=1397GN=asnBPE=3SV=1	REV__tr|A0A553SFQ2|A0A553SFQ2_NIACIasparaginesynthase(glutamine-hydrolyzing)OS=NialliacirculansOX=1397GN=asnBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	522.811767578125	2	522.813659	1043.61277	-1.291	-0.00067494	2.4009	0.0012552	1.1099	0.00058029	522.814957070394	118.97	0.69121	118.82	118.58	119.27	-0.14755					29	13	3	0	0	0	0.40667	1	11449	11449		51.335	4.569	1	61398	+		11734	29604	9619	9630	12806	12806					0.09270326093906078
FLPLLLLAAP	10	Unmodified	_FLPLLLLAAP_					0	0	0		ENST00000493548.5_1_6:32122153-32123690:+|nuORF;nc|ENSG00000258388|Q9UMR5-2|PPT2;ENSG00000221988|ENST00000324816|PPT2;nc|ENSG00000258388|Q9UMR5-3|PPT2	ENST00000493548.5_1_6:32122153-32123690:+|nuORF	ENST00000493548.5_1_6:32122153-32123690:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	534.8115844726562	2	534.346803	1066.67905	-0.64383	-0.00034403	-4.1202	-0.0022016	-4.764	-0.0025456	534.3444255746025	92.709	0.81024	90.747	90.468	91.279	-1.9617					28	16	3	0	0	0	0.026839	1	5862	5862		35.201	15.204	1	84384			11735	9242	9620	9631	12807	12807					0.1483814193593389
FLPLNEYF	8	Unmodified	_FLPLNEYF_					0	0	0		ENST00000545046.5_1_12:133418142-133423791:-|nuORF	ENST00000545046.5_1_12:133418142-133423791:-|nuORF	ENST00000545046.5_1_12:133418142-133423791:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	521.7672119140625	2	521.765843	1041.51713	0.89468	0.00046681	1.1229	0.00058587	2.0175	0.0010527	521.7664062129646	147.12	0.54037	147.12	146.91	147.45	0					25	10	3	0	0	0	0.66704	1	17227	17227		50.025	0	1	112740			11736	13516	9621	9632	12808	12808					-0.00196446817017204
FLPLVKLYAAM	11	Unmodified	_FLPLVKLYAAM_					0	0	0			REV__nc|ENSG00000158865|Q8WWX8-5|SLC5A11	REV__nc|ENSG00000158865|Q8WWX8-5|SLC5A11	MULTI-MSMS	OvCa9_classI_Rep2	2	633.36865234375	2	633.369952	1264.72535	-4.5141	-0.0028591	3.2944	0.0020866	-1.2197	-0.00077254	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.72244	1	15623	15623		21.96	2.8564	1	369460	+		11737	20588	9622	9633	12809	12809					0.1035783877571248
FLPMPLLLP	9	Unmodified	_FLPMPLLLP_					0	0	0		ENST00000262241.6_1_14:103180868-103180916:+|nuORF	ENST00000262241.6_1_14:103180868-103180916:+|nuORF	ENST00000262241.6_1_14:103180868-103180916:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.2713623046875	2	520.814282	1039.61401	-0.62374	-0.00032485	-3.4861	-0.0018156	-4.1099	-0.0021405	520.8127172861705	105.84	0.80478	103.83	103.3	104.1	-2.0161					20	15	2	0	0	0	0.02744	1	9612	9612		39.021	0	1	13505			11738	9887	9623	9634	12810	12810					0.09578824138452546
FLPMRGRSVI	10	Unmodified	_FLPMRGRSVI_					0	0	0			REV__nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1	REV__nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.3515625	2	588.339518	1174.66448	-0.54353	-0.00031978	0.59008	0.00034717	0.046546	2.7385E-05	588.3396808583459	39.32	0.43987	39.32	39.107	39.547	0					16	9	3	0	0	0	0.026994	1	2317	2317		40.778	7.9657	1	162390	+		11739	23193	9624	9635	12811	12811					0.08413746516157516
FLPPSPGQQW	10	Unmodified	_FLPPSPGQQW_					0	0	0			REV__nc|ENSG00000128805|Q7Z5H3-4|ARHGAP22	REV__nc|ENSG00000128805|Q7Z5H3-4|ARHGAP22	MULTI-SECPEP	OvCa9_classI_Rep3	3	578.2914428710938	2	578.792924	1155.57129	-6.3979	-0.0037031	2.7374	0.0015844	-3.6605	-0.0021187	578.794929173399	154.8	1.4114	153.8	152.92	154.34	-1.0076					38	28	2	0	0	0	0.027204	1	13278	13278		17.365	1.7232	1	18594	+		11740	28840	9625	9636	12812	12812					-0.0002685466542970971
FLPPYTFQI	9	Unmodified	_FLPPYTFQI_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.2793579101562	2	563.302593	1124.59063	1.249	0.00070357	0.38937	0.00021933	1.6384	0.00092291	563.3027687199772	152.58	0.78264	152.58	152.16	152.95	0					35	19	2	0	0	0	0.027418	1	17860	17860		49.442	3.4693	1	100650			11741	1040	9626	9637	12813	12813					0.03332101625483119
FLPQCRTF	8	Unmodified	_FLPQCRTF_					0	0	0		ENST00000309060.7_1_20:39813568-39830807:-|nuORF;nc|ENSG00000174306|Q9H4I2-2|ZHX3	ENST00000309060.7_1_20:39813568-39830807:-|nuORF	ENST00000309060.7_1_20:39813568-39830807:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	506.26287841796875	2	506.257662	1010.50077	-0.50726	-0.0002568	2.837	0.0014363	2.3298	0.0011795	506.2592188272637	80.284	3.2748	77.944	77.563	80.838	-2.3399					161	64	6	0	0	0	0.62934	1	4436	4436		57.811	7.7867	1	3690200			11742	10270	9627	9638	12814	12814					-0.004058512547430837
FLPTIGFDD	9	Unmodified	_FLPTIGFDD_					0	0	0			REV__nc|ENSG00000115239|Q9Y575-2|ASB3	REV__nc|ENSG00000115239|Q9Y575-2|ASB3	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.2819213867188	2	512.752933	1023.49131	1.8304	0.00093856	1.0903	0.00055903	2.9207	0.0014976	512.7534532998366	133.66	0.51799	133.66	133.44	133.96	0					15	10	2	0	0	0	0.027462	1	15573	15573		45.952	5.3793	1	67286	+		11743	18227	9628	9639	12815	12815					-0.019493410592758664
FLPVLGGHGA	10	Unmodified	_FLPVLGGHGA_					0	0	0		ENST00000487787.5_1_1:202275897-202288332:+|nuORF	ENST00000487787.5_1_1:202275897-202288332:+|nuORF	ENST00000487787.5_1_1:202275897-202288332:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	485.2700500488281	2	484.271627	966.528701	-1.2527	-0.00060665	-3.2107	-0.0015549	-4.4634	-0.0021615	484.2699204224861	52.515	1.2341	49.702	49.295	50.53	-2.8129					42	24	2	0	0	0	0.027007	1	3568	3568		26.796	0	1	118100			11744	12655	9629	9640	12816	12816					0.044097949970023365
FLPVLTQLSPP	11	Unmodified	_FLPVLTQLSPP_					0	0	0		HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|142|3|sense	HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|142|3|sense	HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|142|3|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	404.5756530761719	3	404.572663	1210.69616	0.66049	0.00026721	3.1792	0.0012862	3.8397	0.0015534	404.5738917619255	68.054	1.0557	68.054	67.803	68.858	0					72	25	5	0	0	0	0.69455	1	6395	6395		34.087	9.5673	1	7472800			11745	14443	9630	9641	12817	12817					0.09924017751086467
FLQALQELK	9	Unmodified	_FLQALQELK_					0	0	0		tr|A0A553SFP2|A0A553SFP2_NIACIIntracellularproteinaseinhibitorBsuPIdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09235PE=4SV=1	tr|A0A553SFP2|A0A553SFP2_NIACIIntracellularproteinaseinhibitorBsuPIdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09235PE=4SV=1	tr|A0A553SFP2|A0A553SFP2_NIACIIntracellularproteinaseinhibitorBsuPIdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09235PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	545.31787109375	2	545.318774	1088.623	-1.828	-0.00099686	1.1653	0.00063545	-0.66275	-0.00036141	545.3193247612335	62.213	1.8935	59.454	58.882	60.775	-2.7593					104	36	5	0	0	0	0.070405	1	4649	4649		107.01	2.9507	1	1098800			11746	33059	9631	9642	12818	12818					0.08222889028456848
FLQDIESEGPF	11	Unmodified	_FLQDIESEGPF_					0	0	0			REV__ENSG00000008086|ENST00000623535|CDKL5	REV__ENSG00000008086|ENST00000623535|CDKL5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	428.238037109375	3	427.871438	1280.59248	0.075986	3.2512E-05	2.6646	0.0011401	2.7406	0.0011726	427.87259142167454	51.521	0.85444	48.347	48.123	48.978	-3.1734					30	16	3	0	0	0	0.026056	1	3056	3056		9.2118	0	1	39044	+		11747	16444	9632	9643	12819	12819					-0.03658934147256332
FLQDKMFI	8	Oxidation (M)	_FLQDKM(Oxidation (M))FI_		FLQDKM(1)FI		FLQDKM(99)FI	0	0	1		ENSG00000276950|ENST00000621179|GSTT4	ENSG00000276950|ENST00000621179|GSTT4	ENSG00000276950|ENST00000621179|GSTT4	MULTI-MSMS	OvCa99_classI_Rep5	1	529.2727661132812	2	529.272978	1056.5314	2.0165	0.0010673	-3.6264	-0.0019194	-1.6099	-0.00085206	529.2709143301529	110.62	2.1589	110.62	109.86	112.02	0					135	47	5	0	0	0	0.34187	1	12550	12550		99.375	10.732	1	8549300			11748	9581	9633	9644	12820	12820		284			0.005398823396262742
FLQEERLTQM	10	Unmodified	_FLQEERLTQM_					0	0	0		nc|ENSG00000100503|Q8N4C6-4|NIN;NIN|p.E2037Rfs*4|1|0.05|ENSG00000100503|chr14:50726036-50726036|C/-|frameshift_variant;nc|ENSG00000100503|Q8N4C6-9|NIN;nc|ENSG00000100503|Q8N4C6-2|NIN;nc|ENSG00000100503|Q8N4C6|NIN;nc|ENSG00000100503|Q8N4C6-5|NIN;nc|ENSG00000100503|Q8N4C6-10|NIN;ENSG00000100503|ENST00000530997|NIN;NIN|p.T1158Qfs*6|1|0.36|ENSG00000100503|chr14:50757527-50757558|ACTTCCTGTCTCTGAACAGAGCTCGTCCCTGT/-|frameshift_variant;nc|ENSG00000100503|Q8N4C6-6|NIN;nc|ENSG00000100503|Q8N4C6-11|NIN;NIN|p.S1483Wfs*13|1|0.28|ENSG00000100503|chr14:50756578-50756582|GTGAG/-|frameshift_variant	nc|ENSG00000100503|Q8N4C6-4|NIN	nc|ENSG00000100503|Q8N4C6-4|NIN	MULTI-MSMS	OvCa9_classI_Rep4_	4	432.2230224609375	3	432.220184	1293.63872	0.80495	0.00034791	3.5518	0.0015352	4.3568	0.0018831	432.2216930877392	63.939	2.4217	60.464	60.109	62.531	-3.475					134	49	5	0	0	0	0.39718	1	4526	4526		68.846	1.8842	1	2524200			11749	2077	9634	9645	12821	12821					0.003648074831971826
FLQEHNTTL	9	Unmodified	_FLQEHNTTL_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MSMS	OvCa99_classI_Rep5	1	551.7816772460938	2	551.780013	1101.54547	-1.2311	-0.00067928	0.6122	0.0003378	-0.61888	-0.00034148	551.7803570506522	70.112	1.0748	70.112	69.84	70.915	0					76	26	5	0	0	0	0.1243	1	6690	6690		90.601	2.8466	1	12089000			11750	1000	9635	9646	12822	12822					-0.0012374890770843194
FLQIECFD	8	Carbamidomethyl (C)	_FLQIEC(Carbamidomethyl (C))FD_	FLQIEC(1)FD		FLQIEC(89)FD		0	1	0		tr|A0A553STZ9|A0A553STZ9_NIACISulfataseOS=NialliacirculansOX=1397GN=CEQ21_05955PE=4SV=1	tr|A0A553STZ9|A0A553STZ9_NIACISulfataseOS=NialliacirculansOX=1397GN=CEQ21_05955PE=4SV=1	tr|A0A553STZ9|A0A553STZ9_NIACISulfataseOS=NialliacirculansOX=1397GN=CEQ21_05955PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	536.2449951171875	2	536.244418	1070.47428	0.97643	0.00052361	1.5461	0.00082907	2.5225	0.0013527	536.2452380983605	114.48	3.218	113.43	113.05	116.27	-1.055					122	64	2	0	0	0	0.39692	1	8458	8458		88.643	8.9303	1	980200			11751	34558	9636	9647	12823	12823	384				-0.058135849367545234
FLQKRPHR	8	Unmodified	_FLQKRPHR_					0	0	0		nc|ENSG00000165792|Q9H7H0-2|METTL17;ENSG00000165792|ENST00000339374|METTL17;nc|ENSG00000165792|Q9H7H0-3|METTL17;ENST00000554949.1_1_14:21458161-21458547:+|nuORF;METTL17|p.T89Afs*6|1|0.12|ENSG00000165792|chr14:20990498-20990519|AACACTGACCAGTTATCTCTGG/-|frameshift_variant;ENST00000557701.5_1_14:21458161-21460365:+|nuORF;ENST00000554985.5_1_14:21458161-21460793:+|nuORF;ENST00000553441.5_1_14:21458218-21461351:+|nuORF;ENST00000553564.5_1_14:21458178-21458547:+|nuORF	nc|ENSG00000165792|Q9H7H0-2|METTL17	nc|ENSG00000165792|Q9H7H0-2|METTL17	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.313232421875	2	541.322517	1080.63048	-0.041154	-2.2278E-05	-1.7973	-0.00097294	-1.8385	-0.00099522	541.3214938915554	114.52	0.78625	113.12	112.83	113.62	-1.3977					21	14	2	0	0	0	0.028476	1	10644	10644		19.36	1.0356	1	34820			11752	6597	9637	9648	12824	12824					0.09339086139402752
FLQKYKKIK	9	Unmodified	_FLQKYKKIK_					0	0	0		ENSG00000130997|ENST00000511885|POLN;ENST00000503601.1_1_4:2083186-2091962:-|nuORF;ENST00000514858.5_1_4:2082849-2194957:-|nuORF	ENSG00000130997|ENST00000511885|POLN	ENSG00000130997|ENST00000511885|POLN	MULTI-SECPEP	OvCa9_classI_Rep2	2	598.3146362304688	2	598.381709	1194.74886	-0.36298	-0.0002172	0.12871	7.7018E-05	-0.23427	-0.00014018	598.3821576672533	107.5	0.28982	107.19	107.02	107.31	-0.30836					9	5	3	0	0	0	0.027462	1	10025	10025		25.45	0	1	22855			11753	4033	9638	9649	12825	12825					0.15928020604542326
FLQLVFTVL	9	Unmodified	_FLQLVFTVL_					0	0	0			REV__ENSG00000177108|ENST00000319374|ZDHHC22	REV__ENSG00000177108|ENST00000319374|ZDHHC22	MULTI-MSMS	OvCa9_classI_Rep2	2	540.330078125	2	540.328611	1078.64267	-1.5762	-0.00085169	4.4127	0.0023843	2.8364	0.0015326	540.3309156564876	138.68	4.2384	138.45	137.13	141.37	-0.22697					227	86	3	0	0	0	0.62352	1	14082	14082		29.15	6.1071	1	66382	+		11754	21987	9639	9650	12826	12826					0.10649265039205602
FLQNNNLLSI	10	Unmodified	_FLQNNNLLSI_					0	0	0		SLC39A14-PPP3CC|3|fusion;SLC39A14-PPP3CC|1|fusion;SLC39A14-PPP3CC|2|fusion;SLC39A14-PPP3CC|6|fusion;SLC39A14-PPP3CC|4|fusion;SLC39A14-PPP3CC|5|fusion;ENST00000495897.2_1_10:75227245-75231333:-|nuORF;nc|ENSG00000120910|P48454-2|PPP3CC;ENSG00000120910|ENST00000240139|PPP3CC;nc|ENSG00000120910|P48454-3|PPP3CC;nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB	SLC39A14-PPP3CC|3|fusion;nc|ENSG00000107758|P16298-2|PPP3CB	SLC39A14-PPP3CC|3|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	588.3234252929688	2	588.324588	1174.63462	0.13969	8.2182E-05	-0.79722	-0.00046903	-0.65754	-0.00038684	588.3240549053105	122.73	1.0413	121.37	121.11	122.15	-1.3666					37	20	3	0	0	0	0.52439	1	11601	11601		51.193	5.2204	1	62082			11755	32832;2614	9640	9651	12827	12827					0.05429086051822196
FLQNNNLLSI	10	Unmodified	_FLQNNNLLSI_					0	0	0		SLC39A14-PPP3CC|3|fusion;SLC39A14-PPP3CC|1|fusion;SLC39A14-PPP3CC|2|fusion;SLC39A14-PPP3CC|6|fusion;SLC39A14-PPP3CC|4|fusion;SLC39A14-PPP3CC|5|fusion;ENST00000495897.2_1_10:75227245-75231333:-|nuORF;nc|ENSG00000120910|P48454-2|PPP3CC;ENSG00000120910|ENST00000240139|PPP3CC;nc|ENSG00000120910|P48454-3|PPP3CC;nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB	SLC39A14-PPP3CC|3|fusion;nc|ENSG00000107758|P16298-2|PPP3CB	SLC39A14-PPP3CC|3|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	588.324588	1174.63462	-1.105	-0.00065007	0.51174	0.00030107	-0.59321	-0.000349	588.3245750089677	121.27	0.69166	121.07	120.8	121.49	-0.19719	-0.20163	0.0010375	NaN	51.193	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48945			11756	32832;2614	9640	9651							0.05429086051822196
FLQNNNLLSI	10	Unmodified	_FLQNNNLLSI_					0	0	0		SLC39A14-PPP3CC|3|fusion;SLC39A14-PPP3CC|1|fusion;SLC39A14-PPP3CC|2|fusion;SLC39A14-PPP3CC|6|fusion;SLC39A14-PPP3CC|4|fusion;SLC39A14-PPP3CC|5|fusion;ENST00000495897.2_1_10:75227245-75231333:-|nuORF;nc|ENSG00000120910|P48454-2|PPP3CC;ENSG00000120910|ENST00000240139|PPP3CC;nc|ENSG00000120910|P48454-3|PPP3CC;nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB	SLC39A14-PPP3CC|3|fusion;nc|ENSG00000107758|P16298-2|PPP3CB	SLC39A14-PPP3CC|3|fusion	MULTI-MATCH	OvCa9_classI_Rep3	3		2	588.324588	1174.63462	-0.15132	-8.9023E-05	-0.3824	-0.00022498	-0.53372	-0.000314	588.3242826128212	122.4	0.89224	121.38	121.06	121.95	-1.0286	0.10448	-1.4617E-05	NaN	51.193	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57222			11757	32832;2614	9640	9651							0.05429086051822196
FLQPELVKL	9	Unmodified	_FLQPELVKL_					0	0	0		ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-2|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	OvCa99_classI_Rep5	1	543.8327026367188	2	543.831517	1085.64848	1.832	0.00099632	0.61416	0.000334	2.4462	0.0013303	543.8316139008673	116.58	1.0894	116.58	116.28	117.37	0					60	23	4	0	0	0	0.040625	2	13330	13330;13353		126.24	0	1	2972700			11758	1399	9641	9652	12828;12829	12828					0.10908363550902322
FLQPELVKL	9	Unmodified	_FLQPELVKL_					0	0	0		ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-2|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	OvCa9_classI_Rep2	2	543.8308715820312	2	543.831517	1085.64848	-1.0706	-0.00058225	1.241	0.00067489	0.17035	9.2641E-05	543.8318598925507	115.73	1.682	115.61	115.24	116.92	-0.11777					70	33	4	0	0	0	0.1804	2	11045	11045;11051		79.713	0	1	205760			11759	1399	9641	9652	12830;12831	12830					0.10908363550902322
FLQPELVKL	9	Unmodified	_FLQPELVKL_					0	0	0		ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-2|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	OvCa9_classI_Rep3	3	543.8303833007812	2	543.831517	1085.64848	-0.67163	-0.00036525	0.39957	0.0002173	-0.27206	-0.00014796	543.8315347045365	116.65	1.9799	115.61	115.24	117.22	-1.0414					64	39	2	0	0	0	0.38969	1	8732	8732		52.937	0	1	209810			11760	1399	9641	9652	12832	12832					0.10908363550902322
FLQPELVKL	9	Unmodified	_FLQPELVKL_					0	0	0		ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-2|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.8311157226562	2	543.831517	1085.64848	-0.80718	-0.00043897	1.0692	0.00058145	0.26199	0.00014248	543.8317310088391	116.91	1.5717	115.54	115.14	116.71	-1.3645					66	29	4	0	0	0	0.066102	1	10919	10919		109.48	0	1	242610			11761	1399	9641	9652	12833	12833					0.10908363550902322
FLQPLTHIS	9	Unmodified	_FLQPLTHIS_					0	0	0		ENST00000495773.1_1_2:219222681-219225323:+|nuORF	ENST00000495773.1_1_2:219222681-219225323:+|nuORF	ENST00000495773.1_1_2:219222681-219225323:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.8199462890625	2	528.297842	1054.58113	-0.8261	-0.00043643	-2.2923	-0.001211	-3.1184	-0.0016474	528.296961595834	73.954	0.73642	71.983	71.43	72.167	-1.9711					16	13	2	0	0	0	0.027462	1	5995	5995		31.53	3.2755	1	22630			11762	12779	9642	9653	12834	12834					0.056023333399252806
FLQQNEVVQ	9	Unmodified	_FLQQNEVVQ_					0	0	0			REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1	REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1	MULTI-MSMS	OvCa99_classI_Rep5	1	552.791259765625	2	552.787838	1103.56112	1.5388	0.00085065	3.7758	0.0020872	5.3146	0.0029379	552.7898458644617	127.22	1.0802	127.22	126.87	127.95	0					35	23	2	0	0	0	0.53483	1	14737	14737		39.253	5.0803	1	172550	+		11763	21383	9643	9654	12835	12835					0.013485376093285595
FLQQNEVVQ	9	Unmodified	_FLQQNEVVQ_					0	0	0			REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1	REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	552.787838	1103.56112	1.5388	0.00085065	3.7758	0.0020872	5.3146	0.0029379	552.7898458644617	127.22	1.0802	127.22	126.87	127.95	0	0	0	NaN	39.253	35	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172550	+		11764	21383	9643	9654							0.013485376093285595
FLQRKLASL	9	Unmodified	_FLQRKLASL_					0	0	0		VPS18|p.F792Cfs*167|1|0.15|ENSG00000104142|chr15:40902793-40902794|-/GTGGCAGCGGCAGGCCCCCTTGC|frameshift_variant;ENSG00000104142|ENST00000220509|VPS18	VPS18|p.F792Cfs*167|1|0.15|ENSG00000104142|chr15:40902793-40902794|-/GTGGCAGCGGCAGGCCCCCTTGC|frameshift_variant	VPS18|p.F792Cfs*167|1|0.15|ENSG00000104142|chr15:40902793-40902794|-/GTGGCAGCGGCAGGCCCCCTTGC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	538.3364868164062	2	538.334759	1074.65496	-0.48856	-0.00026301	0.53561	0.00028834	0.047053	2.533E-05	538.3349296436245	70.373	0.63063	70.373	70.13	70.761	0					40	15	4	0	0	0	0.40667	1	6739	6739		51.335	0	1	2497600			11765	2355	9644	9655	12836	12836					0.12062301502260198
FLQVHIPLSS	10	Unmodified	_FLQVHIPLSS_					0	0	0			REV__tr|A0A7D6ZJ67|A0A7D6ZJ67_9CLOTGlutamate--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=gltXPE=3SV=1	REV__tr|A0A7D6ZJ67|A0A7D6ZJ67_9CLOTGlutamate--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=gltXPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	570.8245239257812	2	570.824224	1139.63389	-3.9995	-0.002283	-0.51625	-0.00029469	-4.5157	-0.0025777	571.3242752294143	153.81	0.75284	152.35	151.99	152.74	-1.4516					34	23	2	0	0	0	0.6104	1	15214	15214		40.778	0	1	30213	+		11766	32079	9645	9656	12837	12837					0.06966291402773095
FLQVHIPLSS	10	Unmodified	_FLQVHIPLSS_					0	0	0			REV__tr|A0A7D6ZJ67|A0A7D6ZJ67_9CLOTGlutamate--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=gltXPE=3SV=1	REV__tr|A0A7D6ZJ67|A0A7D6ZJ67_9CLOTGlutamate--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=gltXPE=3SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	570.824224	1139.63389	-5.555	-0.0031709	1.9476	0.0011117	-3.6074	-0.0020592	571.3252216159397	153.18	0.75999	152.21	151.9	152.66	-0.97301	-0.074359	0.0011924	NaN	40.778	28	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27403	+		11767	32079	9645	9656							0.06966291402773095
FLQVHIPLSS	10	Unmodified	_FLQVHIPLSS_					0	0	0			REV__tr|A0A7D6ZJ67|A0A7D6ZJ67_9CLOTGlutamate--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=gltXPE=3SV=1	REV__tr|A0A7D6ZJ67|A0A7D6ZJ67_9CLOTGlutamate--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=gltXPE=3SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	570.824224	1139.63389	-3.9995	-0.002283	-0.51625	-0.00029469	-4.5157	-0.0025777	571.3242752294143	153.81	0.75284	152.35	151.99	152.74	-1.4516	0.074359	-0.0016205	NaN	40.778	34	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30213	+		11768	32079	9645	9656							0.06966291402773095
FLQVLLRCA	9	Unmodified	_FLQVLLRCA_					0	0	0			REV__ENSG00000178409|ENST00000369042|BEND3	REV__ENSG00000178409|ENST00000369042|BEND3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.8076171875	2	531.810062	1061.60557	-0.25739	-0.00013688	2.2705	0.0012075	2.0132	0.0010706	532.3131075335957	110.78	0.68353	109.17	108.86	109.54	-1.6011					16	12	2	0	0	0	0.027462	1	10194	10194		17.365	0	1	34615	+		11769	22058	9646	9657	12838	12838					0.07723270221822531
FLQYLEVSPV	10	Unmodified	_FLQYLEVSPV_					0	0	0		L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|280|1|anti-sense	L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|280|1|anti-sense	L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|280|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8235473632812	2	597.823889	1193.63323	-4.1469	-0.0024791	4.2201	0.0025229	0.073187	4.3753E-05	597.8262965638429	152.69	0.95377	152.46	152.23	153.19	-0.22696					55	20	4	0	0	0	0.56767	1	15560	15560		45.952	5.1738	1	133350			11770	14677	9647	9658	12839	12839					0.044154519630410505
FLRATKQTP	9	Unmodified	_FLRATKQTP_					0	0	0			REV__nc|ENSG00000166069|Q8N6Q1-2|TMCO5A	REV__nc|ENSG00000166069|Q8N6Q1-2|TMCO5A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.7861938476562	2	531.308741	1060.60293	-0.61739	-0.00032802	-0.19385	-0.000103	-0.81124	-0.00043102	531.308481285385	60.204	1.8797	56.774	55.964	57.844	-3.43					74	37	3	0	0	0	0.027462	1	4144	4144		21.96	4.5949	1	415250	+		11771	21154	9648	9659	12840	12840					0.07505138088527019
FLRAVIHLA	9	Unmodified	_FLRAVIHLA_					0	0	0			REV__nc|ENSG00000133704|O15397-2|IPO8	REV__nc|ENSG00000133704|O15397-2|IPO8	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3218383789062	2	520.324194	1038.63383	-0.056751	-2.9529E-05	-4.0976	-0.0021321	-4.1543	-0.0021616	520.321910932652	59.379	1.3543	56.599	56.137	57.491	-2.7801					59	25	4	0	0	0	0.53957	1	4344	4344		38.806	0.99462	1	379380	+		11772	19153	9649	9660	12841	12841					0.11606336193426614
FLREGLEIY	9	Unmodified	_FLREGLEIY_					0	0	0		tr|A0A553SL90|A0A553SL90_NIACI3'-5'exonucleaseDinGOS=NialliacirculansOX=1397GN=dinGPE=3SV=1	tr|A0A553SL90|A0A553SL90_NIACI3'-5'exonucleaseDinGOS=NialliacirculansOX=1397GN=dinGPE=3SV=1	tr|A0A553SL90|A0A553SL90_NIACI3'-5'exonucleaseDinGOS=NialliacirculansOX=1397GN=dinGPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	569.8345947265625	2	570.308406	1138.60226	-0.74645	-0.00042571	-0.20564	-0.00011728	-0.95209	-0.00054298	570.3090867713601	99.749	0.15892	98.064	97.985	98.144	-1.685					4	2	2	0	0	0	0.027462	1	6736	6736		51.335	10.557	1	6644.1			11773	33696	9650	9661	12842	12842					0.03850298648808348
FLRGFFGSEP	10	Unmodified	_FLRGFFGSEP_					0	0	0		ENSG00000163870|ENST00000355552|TPRA1	ENSG00000163870|ENST00000355552|TPRA1	ENSG00000163870|ENST00000355552|TPRA1	MSMS	OvCa99_classI_Rep5	1	578.7982177734375	2	578.792924	1155.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.44	1	136.44	135.94	136.94	0								0	0	0	0.15238	1	15907	15907		47.657	5.2612	1				11774	6368	9651	9662	12843	12843					-0.0002685466542970971
FLRHNIISTAI	11	Unmodified	_FLRHNIISTAI_					0	0	0			REV__ENST00000528393.1_1_11:79699092-79699545:+|nuORF	REV__ENST00000528393.1_1_11:79699092-79699545:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	428.9190368652344	3	428.918945	1283.73501	-0.4943	-0.00021202	-2.9815	-0.0012788	-3.4758	-0.0014908	428.9176590101011	51.975	1.0763	51.975	51.708	52.784	0					66	24	5	0	0	0	0.58642	1	4040	4040		45.908	5.8499	1	4229500	+		11775	27169	9652	9663	12844	12844					0.104487431054622
FLRHNIISTAI	11	Unmodified	_FLRHNIISTAI_					0	0	0			REV__ENST00000528393.1_1_11:79699092-79699545:+|nuORF	REV__ENST00000528393.1_1_11:79699092-79699545:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	428.918945	1283.73501	-0.39464	-0.00016927	-0.59987	-0.0002573	-0.99451	-0.00042657	428.91862935186856	55.398	0.60975	52.103	51.854	52.464	-3.2944	0.06418	0.0028181	NaN	45.908	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73514	+		11776	27169	9652	9663							0.104487431054622
FLRIACRLL	9	Unmodified	_FLRIACRLL_					0	0	0			REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|192|2|anti-sense	REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|192|2|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	552.8395385742188	2	552.839154	1103.66375	1.804	0.00099732	-3.7506	-0.0020735	-1.9466	-0.0010761	552.8369085938746	137.91	0.85736	137.91	137.64	138.5	0					35	18	3	0	0	0	0.59983	1	16110	16110		31.955	0.42505	1	183030	+		11777	28382	9653	9664	12845	12845					0.11606951867088355
FLRKFIPVM	9	Unmodified	_FLRKFIPVM_					0	0	0		ENSG00000197763|ENST00000524230|TXNRD3;ENST00000524230.6_3_3:126326756-126373974:-|nuORF	ENSG00000197763|ENST00000524230|TXNRD3	ENSG00000197763|ENST00000524230|TXNRD3	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8427734375	2	575.843905	1149.67326	-3.1773	-0.0018296	2.0952	0.0012065	-1.0822	-0.00062316	575.8447773729116	141.87	3.8997	140.86	138.96	142.86	-1.0106					243	78	6	0	0	0	0.61208	1	11738	11738		30.504	0.18592	1	129610			11778	8746	9654	9665	12846	12846					0.10440720152632821
FLRKFIPVM	9	Unmodified	_FLRKFIPVM_					0	0	0		ENSG00000197763|ENST00000524230|TXNRD3;ENST00000524230.6_3_3:126326756-126373974:-|nuORF	ENSG00000197763|ENST00000524230|TXNRD3	ENSG00000197763|ENST00000524230|TXNRD3	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8433227539062	2	575.843905	1149.67326	-4.018	-0.0023138	2.7228	0.0015679	-1.2952	-0.00074586	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.59983	1	12217	12217		31.955	9.3752	1	445630			11779	8746	9654	9665	12847	12847					0.10440720152632821
FLRKFIPVM	9	Unmodified	_FLRKFIPVM_					0	0	0		ENSG00000197763|ENST00000524230|TXNRD3;ENST00000524230.6_3_3:126326756-126373974:-|nuORF	ENSG00000197763|ENST00000524230|TXNRD3	ENSG00000197763|ENST00000524230|TXNRD3	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8422241210938	2	575.843905	1149.67326	-1.5734	-0.00090602	0.46638	0.00026856	-1.107	-0.00063746	575.8439449675558	145.55	4.7888	144.12	142.78	147.57	-1.4357					360	93	6	0	0	0	0.6653	1	14462	14462		24.203	0.68005	1	565210			11780	8746	9654	9665	12848	12848					0.10440720152632821
FLRKKYRGK	9	Unmodified	_FLRKKYRGK_					0	0	0		ENSG00000198780|ENST00000687041|FAM169A	ENSG00000198780|ENST00000687041|FAM169A	ENSG00000198780|ENST00000687041|FAM169A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	598.31689453125	2	598.374749	1194.73495	-0.25969	-0.00015539	-1.7787	-0.0010643	-2.0383	-0.0012197	598.3748755817155	109.06	0.71196	107.33	107.13	107.84	-1.7256					24	13	3	0	0	0	0.027462	1	10004	10004		45.952	25.955	1	32263			11781	8871	9655	9666	12849	12849					0.14536787896099668
FLRLCIAAV	9	Unmodified	_FLRLCIAAV_					0	0	0		ENST00000546704.1_1_12:57868176-57868820:-|nuORF;nc|ENSG00000123329|Q9BRR9-4|ARHGAP9;nc|ENSG00000123329|Q9BRR9-3|ARHGAP9;nc|ENSG00000123329|Q9BRR9-5|ARHGAP9;ENSG00000123329|ENST00000393791|ARHGAP9;nc|ENSG00000123329|Q9BRR9|ARHGAP9	ENST00000546704.1_1_12:57868176-57868820:-|nuORF	ENST00000546704.1_1_12:57868176-57868820:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.7783508300781	2	503.29933	1004.58411	0.51659	0.00026	1.627	0.00081889	2.1436	0.0010789	503.29998440283214	36.697	0.89648	33.804	33.595	34.492	-2.8925					37	17	3	0	0	0	0.027462	1	1313	1313		25.45	0	1	52437			11782	3587	9656	9667	12850	12850					0.08199885193096179
FLRLPETVVRR	11	Unmodified	_FLRLPETVVRR_					0	0	0			REV__ENST00000380191.8_1_10:5855216-5855492:-|nuORF	REV__ENST00000380191.8_1_10:5855216-5855492:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	461.9478759765625	3	462.617377	1384.8303	-0.95821	-0.00044328	-0.82885	-0.00038344	-1.7871	-0.00082672	462.616892344151	27.811	0.29983	27.811	27.691	27.991	0					6	5	2	0	0	0	0.026302	1	854	854		17.167	10.846	1	22891	+		11783	25175	9657	9668	12851	12851					0.15328096296502736
FLRNISEAAL	10	Unmodified	_FLRNISEAAL_					0	0	0			REV__ENSG00000149311|ENST00000675843|ATM	REV__ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3212280273438	2	567.319306	1132.62406	0.26136	0.00014828	-1.3275	-0.00075311	-1.0661	-0.00060483	567.3186831597624	94.082	1.1696	91.59	91.318	92.487	-2.4918					47	23	3	0	0	0	0.44431	1	8224	8224		62.107	1.9892	1	299030	+		11784	20157	9658	9669	12852	12852					0.06305103397357925
FLRQTLIGA	9	Unmodified	_FLRQTLIGA_					0	0	0		nc|ENSG00000163935|Q9UHJ3-2|SFMBT1;ENSG00000163935|ENST00000394752|SFMBT1	nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	MULTI-SECPEP	OvCa9_classI_Rep3	3	510.26373291015625	2	509.805834	1017.59712	-2.375	-0.0012108	-1.5612	-0.00079589	-3.9362	-0.0020067	509.8048852449414	141.03	1.0303	140	139.43	140.46	-1.0339					30	20	2	0	0	0	0.027462	1	11665	11665		13.775	0	1	23108			11785	6381	9659	9670	12853	12853					0.08902039576844345
FLRRQFNV	8	Unmodified	_FLRRQFNV_					0	0	0		PDYN|p.K235N|1|0.13|ENSG00000101327|chr20:1980383-1980383|C/A|missense_variant	PDYN|p.K235N|1|0.13|ENSG00000101327|chr20:1980383-1980383|C/A|missense_variant	PDYN|p.K235N|1|0.13|ENSG00000101327|chr20:1980383-1980383|C/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3095092773438	2	540.309075	1078.6036	1.25	0.00067539	-2.1192	-0.001145	-0.86917	-0.00046962	540.3077955858466	119.23	3.2776	118.2	117.78	121.06	-1.0271					179	64	5	0	0	0	0.7043	1	9113	9113		42.474	1.6963	1	415420			11786	15488	9660	9671	12854	12854					0.06743977528230971
FLRRQYWHWLR	11	Unmodified	_FLRRQYWHWLR_					0	0	0		ENST00000513055.1_1_5:92921088-92921313:-|nuORF	ENST00000513055.1_1_5:92921088-92921313:-|nuORF	ENST00000513055.1_1_5:92921088-92921313:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.8250122070312	3	554.303904	1659.88988	-0.10626	-5.8899E-05	3.3112	0.0018354	3.2049	0.0017765	554.3058279429131	30.269	0.14738	30.269	30.186	30.334	0					4	2	2	0	0	0	0.026497	1	1144	1144		3.2113	1.7926	1	27618			11787	13003	9661	9672	12855	12855					0.08633412030530963
FLRSEAVAQL	10	Unmodified	_FLRSEAVAQL_					0	0	0		ENST00000475698.1_1_1:201982922-201984448:+|nuORF;nc|ENSG00000163435|P78545-2|ELF3;ENSG00000163435|ENST00000367284|ELF3	ENST00000475698.1_1_1:201982922-201984448:+|nuORF	ENST00000475698.1_1_1:201982922-201984448:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3204956054688	2	567.319306	1132.62406	-1.5919	-0.00090313	1.8841	0.0010689	0.29214	0.00016573	567.3204758129912	84.581	1.3452	83.034	82.745	84.091	-1.5462					89	26	5	0	0	0	0.40664	1	7338	7338		67.494	7.3754	1	1915100			11788	6305	9662	9673	12856	12856					0.06305103397380662
FLRSIIKTT	9	Unmodified	_FLRSIIKTT_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;ENSG00000164190|ENST00000282516|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	OvCa9_classI_Rep4_	4	539.8318481445312	2	539.834591	1077.65463	-3.4548	-0.001865	-0.69323	-0.00037423	-4.148	-0.0022393	539.8341906594819	150.18	1.502	148.75	148.37	149.88	-1.4344					84	33	4	0	0	0	0.56889	1	14829	14829		35.618	0.41757	1	222660			11789	6432	9663	9674	12857	12857					0.11890881782437646
FLRTLGLKNGF	11	Unmodified	_FLRTLGLKNGF_					0	0	0		tr|A0A553SQI9|A0A553SQI9_NIACIproteinadenylyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_07785PE=4SV=1	tr|A0A553SQI9|A0A553SQI9_NIACIproteinadenylyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_07785PE=4SV=1	tr|A0A553SQI9|A0A553SQI9_NIACIproteinadenylyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_07785PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3704223632812	2	633.371872	1264.72919	-4.5141	-0.0028591	0.26314	0.00016666	-4.251	-0.0026925	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.72505	1	15736	15736		14.865	0	1	369460			11790	34167	9664	9675	12858	12858					0.1074164459378153
FLRVPKPPIE	10	Unmodified	_FLRVPKPPIE_					0	0	0			REV__nc|ENSG00000186635|Q96P48-3|ARAP1	REV__nc|ENSG00000186635|Q96P48-3|ARAP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	598.31640625	2	598.363516	1194.71248	-0.35101	-0.00021003	-0.19438	-0.00011631	-0.54539	-0.00032634	598.3640060210167	107.55	0.77473	107.24	107.07	107.84	-0.30836					27	15	3	0	0	0	0.026931	1	10059	10059		37.812	3.639	1	59176	+		11791	22603	9665	9676	12859	12859					0.12291143707830088
FLRWILAFITA	11	Unmodified	_FLRWILAFITA_					0	0	0			REV__ENST00000413658.6_1_7:99661853-99662162:-|nuORF	REV__ENST00000413658.6_1_7:99661853-99662162:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	450.93670654296875	3	450.935936	1349.78598	1.6146	0.00072808	0.55126	0.00024858	2.1659	0.00097666	450.9360997934693	63.19	1.2421	60.156	59.756	60.998	-3.0339					70	24	4	0	0	0	0.71582	1	2330	2330		24.232	2.5461	1	192240	+		11792	25515	9666	9677	12860	12860					0.12507692150325056
FLSAMDWHL	9	Unmodified	_FLSAMDWHL_					0	0	0		ENSG00000115649|ENST00000360507|CNPPD1	ENSG00000115649|ENST00000360507|CNPPD1	ENSG00000115649|ENST00000360507|CNPPD1	MULTI-MSMS	OvCa99_classI_Rep5	1	560.268798828125	2	560.268227	1118.5219	1.6471	0.00092279	0.44169	0.00024746	2.0887	0.0011703	560.2684816217741	132.68	0.62332	132.68	132.32	132.94	0					29	12	3	0	0	0	0.27546	1	15416	15416		65.803	17.888	1	268500			11793	3116	9667	9678	12861	12861					-0.032618859459034866
FLSDNPNPK	9	Unmodified	_FLSDNPNPK_					0	0	0		nc|ENSG00000141458|O15118-2|NPC1;ENSG00000141458|ENST00000269228|NPC1	nc|ENSG00000141458|O15118-2|NPC1	nc|ENSG00000141458|O15118-2|NPC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.8019409179688	2	516.261456	1030.50836	-0.30634	-0.00015815	-3.1334	-0.0016176	-3.4397	-0.0017758	516.2594167922928	39.153	1.4483	36.226	35.948	37.396	-2.9264					50	28	3	0	0	0	0.02744	1	1721	1721		44.377	0	1	107380			11794	4917	9668	9679	12862	12862					-0.005674204534898308
FLSECVKSL	9	Carbamidomethyl (C)	_FLSEC(Carbamidomethyl (C))VKSL_	FLSEC(1)VKSL		FLSEC(80)VKSL		0	1	0		ABCC11|p.N269Ifs*13|1|0.19|ENSG00000121270|chr16:48216259-48216260|-/AA|frameshift_variant;ENST00000567385.5_1_16:48244807-48265838:-|nuORF;ABCC11|p.L919Ffs*2|1|0.5|ENSG00000121270|chr16:48187379-48187379|G/-|frameshift_variant;nc|ENSG00000121270|Q96J66-2|ABCC11;ENSG00000121270|ENST00000356608|ABCC11	ABCC11|p.N269Ifs*13|1|0.19|ENSG00000121270|chr16:48216259-48216260|-/AA|frameshift_variant	ABCC11|p.N269Ifs*13|1|0.19|ENSG00000121270|chr16:48216259-48216260|-/AA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.784423828125	2	541.781167	1081.54778	-1.3308	-0.00072103	4.3027	0.0023311	2.9719	0.0016101	541.7835372128249	52.942	2.4877	49.734	49.196	51.684	-3.208					115	48	5	0	0	0	0.1804	1	3208	3208		79.713	15.505	1	458530			11795	4	9669	9680	12863	12863	0				0.010269635057284177
FLSECVKSL	9	Carbamidomethyl (C)	_FLSEC(Carbamidomethyl (C))VKSL_					0	1	0		ABCC11|p.N269Ifs*13|1|0.19|ENSG00000121270|chr16:48216259-48216260|-/AA|frameshift_variant;ENST00000567385.5_1_16:48244807-48265838:-|nuORF;ABCC11|p.L919Ffs*2|1|0.5|ENSG00000121270|chr16:48187379-48187379|G/-|frameshift_variant;nc|ENSG00000121270|Q96J66-2|ABCC11;ENSG00000121270|ENST00000356608|ABCC11	ABCC11|p.N269Ifs*13|1|0.19|ENSG00000121270|chr16:48216259-48216260|-/AA|frameshift_variant	ABCC11|p.N269Ifs*13|1|0.19|ENSG00000121270|chr16:48216259-48216260|-/AA|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	541.781167	1081.54778	-1.7616	-0.00095442	4.7261	0.0025605	2.9645	0.0016061	541.7836154117564	52.641	1.8308	49.828	49.345	51.175	-2.8132	0.046659	0.00019559	NaN	79.713	74	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151350			11796	4	9669	9680			0				0.010269635057284177
FLSELTQQL	9	Unmodified	_FLSELTQQL_					0	0	0		ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	539.7936401367188	2	539.792589	1077.57063	1.8273	0.00098634	0.010774	5.8158E-06	1.838	0.00099216	539.7924858755182	128.16	3.9933	128.16	127.86	131.85	0					189	84	5	0	0	0	0.002835	6	14854	14830;14854;14879;14905;15014;15043		231.3	69.045	1	2409300			11797	9347	9670	9681	12864;12865;12866;12867;12868;12869	12865					0.03494305894855643
FLSELTQQL	9	Unmodified	_FLSELTQQL_					0	0	0		ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	539.7922973632812	2	539.792589	1077.57063	0.30999	0.00016733	-0.93745	-0.00050603	-0.62746	-0.0003387	539.7919487232124	127.31	2.6693	127.07	126.69	129.36	-0.2359					99	53	2	0	0	0	0.059253	3	12457	12445;12451;12457		113.41	17.596	1	134330			11798	9347	9670	9681	12870;12871;12872	12872					0.03494305894855643
FLSELTQQL	9	Unmodified	_FLSELTQQL_					0	0	0		ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	539.7928466796875	2	539.792589	1077.57063	1.6225	0.00087583	-1.9004	-0.0010258	-0.27792	-0.00015002	539.7912623055528	128.05	1.8362	126.96	126.62	128.46	-1.0933					101	36	4	0	0	0	0.012051	7	10052	10052;10057;10063;10069;10075;10081;10088		162.25	55.245	1	170300			11799	9347	9670	9681	12873;12874;12875;12876;12877;12878;12879	12873					0.03494305894855643
FLSELTQQL	9	Unmodified	_FLSELTQQL_					0	0	0		ENST00000465752.1_1_22:24236661-24237189:+|nuORF;ENSG00000240972|ENST00000215754|MIF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	ENST00000465752.1_1_22:24236661-24237189:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	539.791748046875	2	539.792589	1077.57063	-0.25527	-0.00013779	0.16194	8.7414E-05	-0.093333	-5.038E-05	539.7923318698668	128.33	2.6512	126.89	126.5	129.15	-1.4366					136	52	4	0	0	0	0.070405	3	12264	12254;12264;12275		107.01	24.257	1	201700			11800	9347	9670	9681	12880;12881;12882	12881					0.03494305894855643
FLSGLIAAAVQ	11	Unmodified	_FLSGLIAAAVQ_					0	0	0			REV__ENSG00000144583|ENST00000273067|MARCHF4	REV__ENSG00000144583|ENST00000273067|MARCHF4	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3163452148438	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.65947	1	14319	14319		39.253	5.0803	1	202430	+		11801	19920	9671	9682	12883	12883					0.08222889028456848
FLSHKGPSPEG	11	Unmodified	_FLSHKGPSPEG_					0	0	0			REV__ENST00000301399.11_1_19:52376656-52376935:-|nuORF	REV__ENST00000301399.11_1_19:52376656-52376935:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	578.2889404296875	2	578.293288	1154.57202	-5.4888	-0.0031741	-0.73844	-0.00042704	-6.2272	-0.0036012	578.2927598597663	159.22	4.1126	158.99	158.53	162.64	-0.22697					262	82	5	0	0	0	0.17933	5	16190	16160;16190;16248;16294;16463		82.75	12.461	1	1073400	+		11802	24249	9672	9683	12884;12885;12886;12887;12888	12885					0.0009193998362206912
FLSHKGPSPEG	11	Unmodified	_FLSHKGPSPEG_					0	0	0			REV__ENST00000301399.11_1_19:52376656-52376935:-|nuORF	REV__ENST00000301399.11_1_19:52376656-52376935:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2888793945312	2	578.293288	1154.57202	-7.6021	-0.0043963	1.2846	0.00074285	-6.3176	-0.0036534	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.16138	12	13821	13645;13803;13815;13821;13875;13899;13923;13929;13953;13989;13995;14124		85.161	11.186	1	1429200	+		11803	24249	9672	9683	12889;12890;12891;12892;12893;12894;12895;12896;12897;12898;12899;12900	12892					0.0009193998362206912
FLSHKGPSPEG	11	Unmodified	_FLSHKGPSPEG_					0	0	0			REV__ENST00000301399.11_1_19:52376656-52376935:-|nuORF	REV__ENST00000301399.11_1_19:52376656-52376935:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2897338867188	2	578.293288	1154.57202	-7.6654	-0.0044328	1.6458	0.00095178	-6.0195	-0.0034811	578.2940529397285	163.97	0.95636	162.57	161.7	162.66	-1.3925					62	21	3	0	0	0	0.28332	1	14289	14289		69.628	7.5202	1	144290	+		11804	24249	9672	9683	12901	12901					0.0009193998362206912
FLSHKGPSPEG	11	Unmodified	_FLSHKGPSPEG_					0	0	0			REV__ENST00000301399.11_1_19:52376656-52376935:-|nuORF	REV__ENST00000301399.11_1_19:52376656-52376935:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.290283203125	2	578.293288	1154.57202	-7.0214	-0.0040605	0.71071	0.000411	-6.3107	-0.0036495	578.2935937226971	160.38	4.1596	158.77	158.05	162.21	-1.6101					391	105	5	0	0	0	0.080408	4	15845	15806;15845;15856;15914		101.25	7.2462	1	1912500	+		11805	24249	9672	9683	12902;12903;12904;12905	12903					0.0009193998362206912
FLSHNFLTV	9	Unmodified	_FLSHNFLTV_					0	0	0		ENSG00000136205|ENST00000311160|TNS3;nc|ENSG00000136205|Q68CZ2-2|TNS3	ENSG00000136205|ENST00000311160|TNS3	ENSG00000136205|ENST00000311160|TNS3	MULTI-MSMS	OvCa99_classI_Rep5	1	539.2930908203125	2	539.290017	1076.56548	1.3191	0.00071137	1.1745	0.00063339	2.4936	0.0013448	539.290641318669	109.35	1.2808	109.35	108.71	110	0					68	28	4	0	0	0	0.18193	1	12368	12368		79.451	5.4763	1	1397000			11806	4471	9673	9684	12906	12906					0.03026046822878925
FLSHTLVID	9	Unmodified	_FLSHTLVID_					0	0	0			REV__nc|ENSG00000108352|Q9UHV5|RAPGEFL1	REV__nc|ENSG00000108352|Q9UHV5|RAPGEFL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.297607421875	2	522.78985	1043.56515	-0.73925	-0.00038647	-0.11201	-5.8557E-05	-0.85126	-0.00044503	522.7889664463892	117.13	0.47284	115.77	115.46	115.93	-1.3645					10	8	2	0	0	0	0.027462	1	10955	10955		37.159	3.6435	1	13500	+		11807	17880	9674	9685	12907	12907					0.04510627103036313
FLSHTLVID	9	Unmodified	_FLSHTLVID_					0	0	0			REV__nc|ENSG00000108352|Q9UHV5|RAPGEFL1	REV__nc|ENSG00000108352|Q9UHV5|RAPGEFL1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	522.78985	1043.56515	-0.34499	-0.00018036	0.15883	8.3037E-05	-0.18615	-9.7318E-05	522.7896332627755	115.84	0.39514	115.73	115.39	115.79	-0.11777	-0.020483	0.00010525	NaN	37.159	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17457	+		11808	17880	9674	9685							0.04510627103036313
FLSILRLSSFI	11	Unmodified	_FLSILRLSSFI_					0	0	0			REV__nc|ENSG00000133107|Q9UBN4-6|TRPC4	REV__nc|ENSG00000133107|Q9UBN4-6|TRPC4	MULTI-MSMS	OvCa9_classI_Rep2	2	432.5953063964844	3	432.595579	1294.76491	-0.63357	-0.00027408	-1.6744	-0.00072432	-2.3079	-0.0009984	432.5948373666812	57.879	2.8015	55.087	54.625	57.426	-2.792					168	54	5	0	0	0	0.67712	1	4175	4175		37.508	3.5865	1	528810	+		11809	19128	9675	9686	12908	12908					0.12931682050793825
FLSILRLSSFI	11	Unmodified	_FLSILRLSSFI_					0	0	0			REV__nc|ENSG00000133107|Q9UBN4-6|TRPC4	REV__nc|ENSG00000133107|Q9UBN4-6|TRPC4	MULTI-MSMS	OvCa9_classI_Rep4_	4	432.5956115722656	3	432.595579	1294.76491	0.89052	0.00038524	-2.9263	-0.0012659	-2.0358	-0.00088066	432.59417922120264	59.147	2.3322	55.755	55.4	57.732	-3.392					127	46	4	0	0	0	0.62561	1	3935	3935		42.338	2.4649	1	477670	+		11810	19128	9675	9686	12909	12909					0.12931682050793825
FLSLLTYSF	9	Unmodified	_FLSLLTYSF_					0	0	0			REV__ENSG00000155495|ENST00000285879|MAGEC1	REV__ENSG00000155495|ENST00000285879|MAGEC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.25341796875	2	545.794601	1089.57465	-0.5113	-0.00027907	-1.2729	-0.00069474	-1.7842	-0.0009738	545.7917903111179	105.75	0.2487	103.73	103.6	103.85	-2.0161					6	4	2	0	0	0	0.027462	1	9599	9599		33.516	1.9858	1	4830	+		11811	20426	9676	9687	12910	12910					0.03344395388558041
FLSLYSKPL	9	Unmodified	_FLSLYSKPL_					0	0	0			REV__ENST00000557290.1_1_14:58737043-58738610:+|nuORF	REV__ENST00000557290.1_1_14:58737043-58738610:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	534.3101806640625	2	534.310418	1066.60628	0.99458	0.00053142	-3.2345	-0.0017282	-2.2399	-0.0011968	534.3085618191654	156.9	0.7014	156.9	156.6	157.3	0					29	13	3	0	0	0	0.53957	1	18383	18383		38.806	3.1879	1	188740	+		11812	27572	9677	9688	12911	12911					0.07564388142509415
FLSPAFQEF	9	Unmodified	_FLSPAFQEF_					0	0	0		ENST00000512908.2_1_5:70398727-70422449:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP;ENSG00000249437|ENST00000517649|NAIP;ENST00000315147.8_1_5:70265933-70281744:-|nuORF	ENST00000512908.2_1_5:70398727-70422449:-|nuORF	ENST00000512908.2_1_5:70398727-70422449:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	543.7722778320312	2	543.26875	1084.52295	0.61422	0.00033368	0.55688	0.00030254	1.1711	0.00063622	543.2690176260463	159.86	0.68901	159.86	159.62	160.31	0					24	13	3	0	0	0	0.46377	1	18741	18741		45.952	0	1	83865			11813	9409	9678	9689	12912	12912					-0.015933483053458986
FLSPRRLEA	9	Unmodified	_FLSPRRLEA_					0	0	0		ENST00000296402.9_1_4:114682317-114683073:-|nuORF	ENST00000296402.9_1_4:114682317-114683073:-|nuORF	ENST00000296402.9_1_4:114682317-114683073:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	544.818603515625	2	544.81419	1087.61383	1.0333	0.00056297	3.6578	0.0019928	4.6911	0.0025558	544.8162256701747	83.398	1.6377	83.398	83.035	84.672	0					86	38	4	0	0	0	0.11471	2	8718	8686;8718		93.195	18.94	1	19887000			11814	10133	9679	9690	12913;12914	12914					0.07352540462784418
FLSPSLSFH	9	Unmodified	_FLSPSLSFH_					0	0	0			REV__ENST00000461762.5_1_9:132595912-132596119:-|nuORF	REV__ENST00000461762.5_1_9:132595912-132596119:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.2510986328125	2	517.768917	1033.52328	2.1791	0.0011283	1.3563	0.00070225	3.5354	0.0018305	517.7691058623124	75.925	0.19453	75.925	75.801	75.996	0					7	4	2	0	0	0	0.027462	1	7570	7570		38.806	0	1	155360	+		11815	26102	9680	9691	12915	12915					0.007860714145181191
FLSQPQPPT	9	Unmodified	_FLSQPQPPT_					0	0	0		HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|115|3|sense	HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|115|3|sense	HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|115|3|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7646179199219	2	507.766374	1013.5182	-2.8803	-0.0014625	-1.5782	-0.00080136	-4.4585	-0.0022639	507.76550943835366	36.279	0.83902	33.569	33.35	34.189	-2.7097					40	16	4	0	0	0	0.50149	1	1547	1547		42.396	5.9494	1	316260			11816	14449	9681	9692	12916	12916					0.01197767551900597
FLSRDLGRDGR	11	Unmodified	_FLSRDLGRDGR_					0	0	0		ENST00000359236.9_1_12:118533588-118541507:-|nuORF	ENST00000359236.9_1_12:118533588-118541507:-|nuORF	ENST00000359236.9_1_12:118533588-118541507:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	431.2343444824219	3	431.233704	1290.67928	-0.65762	-0.00028359	0.44171	0.00019048	-0.21592	-9.311E-05	431.23389730645385	39.936	1.5833	37.227	36.953	38.536	-2.7097					108	31	5	0	0	0	0.66539	2	1972	1972;2022		38.714	3.2184	1	918010			11817	10749	9682	9693	12917;12918	12917					0.04556909917823759
FLSSPVKKV	9	Unmodified	_FLSSPVKKV_					0	0	0		ENST00000580285.1_1_17:62529306-62530930:+|nuORF	ENST00000580285.1_1_17:62529306-62530930:+|nuORF	ENST00000580285.1_1_17:62529306-62530930:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	502.30029296875	2	502.810585	1003.60662	-0.64621	-0.00032492	-2.0654	-0.0010385	-2.7116	-0.0013634	502.8088932588869	114.5	1.0858	114.38	114.21	115.29	-0.11777					44	21	4	0	0	0	0.027462	1	10887	10887		44.117	3.5442	1	253090			11818	13984	9683	9694	12919	12919					0.10495807862378115
FLSSSFSVLK	10	Unmodified	_FLSSSFSVLK_					0	0	0		ZNF507|p.S166Rfs*9|1|0.07|ENSG00000168813|chr19:32353326-32353329|AGCC/-|frameshift_variant;nc|ENSG00000168813|Q8TCN5-2|ZNF507;ENSG00000168813|ENST00000355898|ZNF507	ZNF507|p.S166Rfs*9|1|0.07|ENSG00000168813|chr19:32353326-32353329|AGCC/-|frameshift_variant	ZNF507|p.S166Rfs*9|1|0.07|ENSG00000168813|chr19:32353326-32353329|AGCC/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	557.8104248046875	2	557.810782	1113.60701	-1.5435	-0.00086096	1.4622	0.00081564	-0.081249	-4.5322E-05	557.8114782865623	144.9	1.3416	144.68	144.34	145.68	-0.22696					84	26	5	0	0	0	0.79917	1	14645	14645		19.104	0.84144	1	532460			11819	6945	9684	9695	12920	12920					0.05475182791565203
FLSSVIQNL	9	Unmodified	_FLSSVIQNL_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MSMS	OvCa99_classI_Rep5	1	510.79168701171875	2	510.78985	1019.56515	1.7258	0.0008815	0.24305	0.00012415	1.9688	0.0010056	510.78983402844193	135.44	2.2729	135.44	135.13	137.4	0					95	47	4	0	0	0	0.014964	3	15787	15763;15787;15811		153.04	19.36	1	1184600			11820	7405	9685	9696	12921;12922;12923	12922					0.056146271030456774
FLSSVLAITL	10	Unmodified	_FLSSVLAITL_					0	0	0		Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|186|2|anti-sense	Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|186|2|anti-sense	Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|186|2|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	532.3260498046875	2	532.323525	1062.6325	1.9786	0.0010533	-0.020228	-1.0768E-05	1.9584	0.0010425	532.3233839517499	110.28	0.71723	110.28	110.04	110.76	0					28	15	3	0	0	0	0.26627	1	12516	12516		84.916	2.165	1	324310			11821	14378	9686	9697	12924	12924					0.10368657313983931
FLSTFKEHF	9	Unmodified	_FLSTFKEHF_					0	0	0		ENSG00000121797|ENST00000399036|CCRL2;nc|ENSG00000121797|O00421-2|CCRL2	ENSG00000121797|ENST00000399036|CCRL2	ENSG00000121797|ENST00000399036|CCRL2	MULTI-MSMS	OvCa9_classI_Rep2	2	578.2896118164062	2	578.295299	1154.57605	-5.4887	-0.0031741	-4.2165	-0.0024384	-9.7053	-0.0056125	578.2927598597663	159.22	4.1126	158.99	158.53	162.64	-0.22697					262	82	5	0	0	0	0.22961	5	16231	16154;16166;16231;16254;16264		71.296	17.944	1	1073400			11822	3500	9687	9698	12925;12926;12927;12928;12929	12927					0.004940294773177811
FLSTFKEHF	9	Unmodified	_FLSTFKEHF_					0	0	0		ENSG00000121797|ENST00000399036|CCRL2;nc|ENSG00000121797|O00421-2|CCRL2	ENSG00000121797|ENST00000399036|CCRL2	ENSG00000121797|ENST00000399036|CCRL2	MULTI-MSMS	OvCa9_classI_Rep3	3	578.28955078125	2	578.295299	1154.57605	-7.6021	-0.0043963	-2.1936	-0.0012685	-9.7957	-0.0056648	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.24951	10	13941	13630;13668;13809;13857;13935;13941;13947;13959;13965;14186		68.787	7.0847	1	1429200			11823	3500	9687	9698	12930;12931;12932;12933;12934;12935;12936;12937;12938;12939	12935					0.004940294773177811
FLSTFKEHF	9	Unmodified	_FLSTFKEHF_					0	0	0		ENSG00000121797|ENST00000399036|CCRL2;nc|ENSG00000121797|O00421-2|CCRL2	ENSG00000121797|ENST00000399036|CCRL2	ENSG00000121797|ENST00000399036|CCRL2	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2877807617188	2	578.295299	1154.57605	-7.6653	-0.0044328	-1.8323	-0.0010596	-9.4976	-0.0054924	578.2940529397285	163.97	0.95636	162.57	161.7	162.66	-1.3925					62	21	3	0	0	0	0.50149	1	14244	14244		42.396	5.9494	1	144290			11824	3500	9687	9698	12940	12940					0.004940294773177811
FLSTFKEHF	9	Unmodified	_FLSTFKEHF_					0	0	0		ENSG00000121797|ENST00000399036|CCRL2;nc|ENSG00000121797|O00421-2|CCRL2	ENSG00000121797|ENST00000399036|CCRL2	ENSG00000121797|ENST00000399036|CCRL2	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.2896728515625	2	578.295299	1154.57605	-7.0214	-0.0040605	-2.7674	-0.0016004	-9.7888	-0.0056608	578.2935937226971	160.38	4.1596	158.77	158.05	162.21	-1.6101					391	105	5	0	0	0	0.19758	2	15868	15817;15868		76.774	10.345	1	1912500			11825	3500	9687	9698	12941;12942	12942					0.004940294773177811
FLSVLPLEKM	10	Oxidation (M)	_FLSVLPLEKM(Oxidation (M))_		FLSVLPLEKM(1)		FLSVLPLEKM(53)	0	0	1			REV__nc|ENSG00000015592|Q9H169-3|STMN4	REV__nc|ENSG00000015592|Q9H169-3|STMN4	MULTI-MSMS	OvCa99_classI_Rep5	1	596.8373413085938	2	596.835942	1191.65733	2.038	0.0012164	-2.8898	-0.0017247	-0.85174	-0.00050835	596.834156842729	117.42	1.968	117.42	117.09	119.05	0					100	41	5	0	0	0	0.50999	1	13503	13503		52.937	6.9645	1	4303800	+		11826	16521	9688	9699	12943	12943		393			0.06916969125063588
FLSVMILMSV	10	Oxidation (M)	_FLSVM(Oxidation (M))ILMSV_		FLSVM(1)ILMSV		FLSVM(45)ILM(-45)SV	0	0	1			REV__tr|A0A7D6VN75|A0A7D6VN75_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17770PE=4SV=1	REV__tr|A0A7D6VN75|A0A7D6VN75_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17770PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	578.2896728515625	2	578.311246	1154.60794	-7.6545	-0.0044267	-3.4069	-0.0019702	-11.061	-0.0063969	578.8102226270106	159.82	0.25085	158.49	158.36	158.61	-1.3316					5	4	2	0	0	0	0.027513	1	13833	13833		90.777	8.5361	2	10013	+		11827	31162	9689	9700	12944	12944		689			0.03681937844589811
FLSVMILMSV	10	Oxidation (M)	_FLSVM(Oxidation (M))ILMSV_		FLSVM(1)ILMSV		FLSVM(44)ILM(-44)SV	0	0	1			REV__tr|A0A7D6VN75|A0A7D6VN75_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17770PE=4SV=1	REV__tr|A0A7D6VN75|A0A7D6VN75_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17770PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	578.2901000976562	2	578.311246	1154.60794	-6.9826	-0.0040381	0.56845	0.00032874	-6.4142	-0.0037094	578.3115281949026	160.27	0.18428	158.66	158.53	158.71	-1.6101					5	3	2	0	0	0	0.026462	1	15833	15833		87.754	16.459	2	4962	+		11828	31162	9689	9700	12945	12945		689			0.03681937844589811
FLSVTIINLAS	11	Unmodified	_FLSVTIINLAS_					0	0	0		nc|ENSG00000138821|Q9C0K1-2|SLC39A8;nc|ENSG00000138821|Q9C0K1-3|SLC39A8;ENSG00000138821|ENST00000356736|SLC39A8	nc|ENSG00000138821|Q9C0K1-2|SLC39A8	nc|ENSG00000138821|Q9C0K1-2|SLC39A8	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3429565429688	2	589.344989	1176.67542	-3.0463	-0.0017953	-0.38122	-0.00022467	-3.4276	-0.00202	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.71789	1	14892	14892		23.523	5.2606	1	272220			11829	4736	9690	9701	12946	12946					0.09415427371436635
FLSWVVHDP	9	Unmodified	_FLSWVVHDP_					0	0	0			REV__ENST00000505282.1_1_4:66959972-66960239:+|nuORF	REV__ENST00000505282.1_1_4:66959972-66960239:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	550.2803344726562	2	550.282192	1098.54983	-0.48948	-0.00026935	-4.3667	-0.0024029	-4.8562	-0.0026723	550.279418408032	120.93	0.93742	120.74	120.36	121.3	-0.19719					42	18	3	0	0	0	0.44294	1	11683	11683		47.916	5.5195	1	64615	+		11830	19767	9691	9702	12947	12947					0.004497603058325694
FLSWVVHDP	9	Unmodified	_FLSWVVHDP_					0	0	0			REV__ENST00000505282.1_1_4:66959972-66960239:+|nuORF	REV__ENST00000505282.1_1_4:66959972-66960239:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	550.282192	1098.54983	-0.48948	-0.00026935	-4.3667	-0.0024029	-4.8562	-0.0026723	550.279418408032	120.93	0.93742	120.74	120.36	121.3	-0.19719	0.19968	0.00090864	NaN	47.916	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64615	+		11831	19767	9691	9702							0.004497603058325694
FLSWVVHDP	9	Unmodified	_FLSWVVHDP_					0	0	0			REV__ENST00000505282.1_1_4:66959972-66960239:+|nuORF	REV__ENST00000505282.1_1_4:66959972-66960239:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	550.282192	1098.54983	0.80546	0.00044323	-5.8019	-0.0031927	-4.9964	-0.0027495	550.2787240057127	121.46	1.1518	120.43	120.12	121.27	-1.0279	-0.10462	-0.00067091	NaN	47.916	49	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66530	+		11832	19767	9691	9702							0.004497603058325694
FLSYVKDQ	8	Unmodified	_FLSYVKDQ_					0	0	0			REV__ENSG00000196578|ENST00000358642|OR5AC2	REV__ENSG00000196578|ENST00000358642|OR5AC2	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.8251953125	2	500.260925	998.507297	-1.6262	-0.00081354	-2.3394	-0.0011703	-3.9656	-0.0019838	500.25953154530976	61.317	1.0316	58.557	58.254	59.286	-2.7593					25	19	2	0	0	0	0.028476	1	4535	4535		73.975	13.856	1	23868	+		11833	22844	9692	9703	12948	12948					0.007983651776157785
FLTALTLNNI	10	Unmodified	_FLTALTLNNI_					0	0	0		tr|A0A7D6VPN4|A0A7D6VPN4_9CLOTMBLfoldmetallo-hydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23730PE=4SV=1	tr|A0A7D6VPN4|A0A7D6VPN4_9CLOTMBLfoldmetallo-hydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23730PE=4SV=1	tr|A0A7D6VPN4|A0A7D6VPN4_9CLOTMBLfoldmetallo-hydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23730PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	560.8025512695312	2	560.324057	1118.63356	1.5422	0.00086415	-2.64	-0.0014792	-1.0977	-0.00061509	560.3223703911005	113.57	0.48485	112.12	111.8	112.29	-1.4461					21	9	4	0	0	0	0.026867	1	10514	10514		21.686	0	1	31352			11834	34782	9693	9704	12949	12949					0.07898871682891695
FLTELKQIL	9	Unmodified	_FLTELKQIL_					0	0	0		tr|A0A553SM87|A0A553SM87_NIACIDihydrolipoamideacetyltransferasecomponentofpyruvatedehydrogenasecomplexOS=NialliacirculansOX=1397GN=CEQ21_22085PE=3SV=1	tr|A0A553SM87|A0A553SM87_NIACIDihydrolipoamideacetyltransferasecomponentofpyruvatedehydrogenasecomplexOS=NialliacirculansOX=1397GN=CEQ21_22085PE=3SV=1	tr|A0A553SM87|A0A553SM87_NIACIDihydrolipoamideacetyltransferasecomponentofpyruvatedehydrogenasecomplexOS=NialliacirculansOX=1397GN=CEQ21_22085PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	552.8361206054688	2	552.8368	1103.65905	-0.48299	-0.00026702	-0.052125	-2.8817E-05	-0.53512	-0.00029583	552.8367061638771	109.39	3.5263	108.25	107.77	111.3	-1.1444					193	68	5	0	0	0	0.094616	1	7873	7873		98.629	0	1	692740			11835	33811	9694	9705	12950	12950					0.11136346205330483
FLTGGVILLF	10	Unmodified	_FLTGGVILLF_					0	0	0			REV__tr|A0A7D6ZYR3|A0A7D6ZYR3_9CLOTTransglutaminasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17350PE=4SV=1	REV__tr|A0A7D6ZYR3|A0A7D6ZYR3_9CLOTTransglutaminasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17350PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3294067382812	2	540.328611	1078.64267	-1.2676	-0.00068491	4.0333	0.0021793	2.7657	0.0014944	540.3307152267141	139.22	4.0818	138.16	137	141.08	-1.0595					200	82	3	0	0	0	0.81289	1	11570	11570		17.365	0	1	55828	+		11836	32386	9695	9706	12951	12951					0.1064926503922834
FLTHKTVNHF	10	Unmodified	_FLTHKTVNHF_					0	0	0		ENST00000296785.7_1_5:72856986-72857109:-|nuORF	ENST00000296785.7_1_5:72856986-72857109:-|nuORF	ENST00000296785.7_1_5:72856986-72857109:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	622.3347778320312	2	622.332747	1242.65094	-0.45589	-0.00028372	0.24176	0.00015045	-0.21413	-0.00013326	622.3327841646678	63.375	1.4031	59.9	59.625	61.028	-3.475					79	28	4	0	0	0	0.67931	1	4460	4460		32.812	3.6424	1	411840			11837	10145	9696	9707	12952	12952					0.039322120085671486
FLTIHDAVLH	10	Unmodified	_FLTIHDAVLH_					0	0	0		ENSG00000091138|ENST00000340010|SLC26A3	ENSG00000091138|ENST00000340010|SLC26A3	ENSG00000091138|ENST00000340010|SLC26A3	MULTI-MSMS	OvCa9_classI_Rep4_	4	583.3197021484375	2	583.321848	1164.62914	-1.2974	-0.00075679	-2.2315	-0.0013017	-3.5289	-0.0020585	583.3203801756534	40.186	0.88012	37.232	37.012	37.893	-2.9541					50	16	5	0	0	0	0.76627	1	1707	1707		23.042	3.0457	1	304260			11838	1866	9697	9708	12953	12953					0.053414072599935025
FLTKHDDDN	9	Unmodified	_FLTKHDDDN_					0	0	0			REV__ZBTB14|p.C307Wfs*14|1|0.2|ENSG00000198081|chr18:5291287-5291287|A/-|frameshift_variant	REV__ZBTB14|p.C307Wfs*14|1|0.2|ENSG00000198081|chr18:5291287-5291287|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	551.831298828125	2	552.751453	1103.48835	-1.422	-0.000786	-2.6742	-0.0014782	-4.0962	-0.0022642	553.2530741006823	101.21	0.20999	99.603	99.498	99.708	-1.6053					5	3	2	0	0	0	0.027462	1	6914	6914		42.864	14.982	1	6556.9	+		11839	22984	9698	9709	12954	12954					-0.05925216184095916
FLTKQEILL	9	Unmodified	_FLTKQEILL_					0	0	0		nc|ENSG00000185043|Q99828-2|CIB1;ENSG00000185043|ENST00000328649|CIB1;chr15:90231213-90233669|195|14.63|0.67|4.44|-|1|CIB1,CIB1|1	nc|ENSG00000185043|Q99828-2|CIB1	nc|ENSG00000185043|Q99828-2|CIB1	MULTI-MSMS	OvCa99_classI_Rep5	1	552.8382568359375	2	552.8368	1103.65905	2.5772	0.0014248	-0.5177	-0.00028621	2.0595	0.0011386	552.8363896537086	107.73	2.556	107.73	107.44	110	0					157	58	4	0	0	0	0.0078217	3	12185	12155;12185;12215		180.93	58.591	1	10910000			11840	8218	9699	9710	12955;12956;12957	12956					0.1113634620535322
FLTKQEILL	9	Unmodified	_FLTKQEILL_					0	0	0		nc|ENSG00000185043|Q99828-2|CIB1;ENSG00000185043|ENST00000328649|CIB1;chr15:90231213-90233669|195|14.63|0.67|4.44|-|1|CIB1,CIB1|1	nc|ENSG00000185043|Q99828-2|CIB1	nc|ENSG00000185043|Q99828-2|CIB1	MULTI-MSMS	OvCa9_classI_Rep2	2	552.8367919921875	2	552.8368	1103.65905	0.87271	0.00048247	-1.2041	-0.00066569	-0.33142	-0.00018322	552.8360159131452	108.34	3.6062	108.12	107.53	111.14	-0.22498					186	72	4	0	0	0	0.013371	8	10145	10135;10139;10145;10151;10158;10164;10170;10177		158.07	49.601	1	617350			11841	8218	9699	9710	12958;12959;12960;12961;12962;12963;12964;12965	12960					0.1113634620535322
FLTKQEILL	9	Unmodified	_FLTKQEILL_					0	0	0		nc|ENSG00000185043|Q99828-2|CIB1;ENSG00000185043|ENST00000328649|CIB1;chr15:90231213-90233669|195|14.63|0.67|4.44|-|1|CIB1,CIB1|1	nc|ENSG00000185043|Q99828-2|CIB1	nc|ENSG00000185043|Q99828-2|CIB1	MULTI-MSMS	OvCa9_classI_Rep3	3	552.8359985351562	2	552.8368	1103.65905	-0.48299	-0.00026702	-0.052125	-2.8817E-05	-0.53512	-0.00029583	552.8367061638771	109.39	3.5263	108.25	107.77	111.3	-1.1444					193	68	5	0	0	0	0.0094524	5	7848	7842;7848;7854;7861;7867		171.38	63.297	1	692740			11842	8218	9699	9710	12966;12967;12968;12969;12970	12967					0.1113634620535322
FLTKQEILL	9	Unmodified	_FLTKQEILL_					0	0	0		nc|ENSG00000185043|Q99828-2|CIB1;ENSG00000185043|ENST00000328649|CIB1;chr15:90231213-90233669|195|14.63|0.67|4.44|-|1|CIB1,CIB1|1	nc|ENSG00000185043|Q99828-2|CIB1	nc|ENSG00000185043|Q99828-2|CIB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.8365478515625	2	552.8368	1103.65905	0.72175	0.00039901	-1.036	-0.00057275	-0.31427	-0.00017374	552.8361514152971	109.85	3.8941	108.25	107.8	111.7	-1.6011					189	74	4	0	0	0	0.013371	4	10095	10083;10095;10108;10121		158.07	44.441	1	782740			11843	8218	9699	9710	12971;12972;12973;12974	12972					0.1113634620535322
FLTKRFCDFT	10	Unmodified	_FLTKRFCDFT_					0	0	0			REV__ENST00000440964.1_1_3:48895145-48933199:-|nuORF	REV__ENST00000440964.1_1_3:48895145-48933199:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	426.5507507324219	3	426.549753	1276.62743	2.5236	0.0010764	0.031777	1.3555E-05	2.5554	0.00109	426.54970356992385	86.094	0.5613	86.094	85.87	86.431	0					28	13	3	0	0	0	0.58282	1	9062	9062		40.058	4.88	1	1252200	+		11844	22063	9700	9711	12975	12975					0.000180301797172433
FLTLFYTV	8	Unmodified	_FLTLFYTV_					0	0	0		ENSG00000204704|ENST00000377175|OR2W1	ENSG00000204704|ENST00000377175|OR2W1	ENSG00000204704|ENST00000377175|OR2W1	MULTI-MSMS	OvCa99_classI_Rep5	1	502.28521728515625	2	502.278586	1002.54262	1.3191	0.00066253	-0.36953	-0.00018561	0.94953	0.00047693	502.2782845774198	130.84	0.52582	130.84	130.53	131.06	0					23	10	3	0	0	0	0.65582	1	15189	15189		52.299	2.2746	1	174930			11845	9024	9701	9712	12976	12976					0.041450277054195794
FLTLHKVKL	9	Unmodified	_FLTLHKVKL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.P12974Lfs*4|1|0.05|ENSG00000155657|chr2:178631204-178631205|-/GTACA|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OvCa9_classI_Rep2	2	549.8552856445312	2	549.855327	1097.6961	1.0643	0.00058521	-1.2465	-0.00068539	-0.18218	-0.00010017	549.8544457110994	131.23	2.0182	131	130.65	132.67	-0.22696					85	40	4	0	0	0	0.40667	1	12923	12923		51.335	0	1	157210			11846	5793;36288	9702	9713	12977	12977					0.15116062541756037
FLTLYYPQ	8	Unmodified	_FLTLYYPQ_					0	0	0			REV__tr|A0A553SIL9|A0A553SIL9_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15100PE=4SV=1	REV__tr|A0A553SIL9|A0A553SIL9_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15100PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.8082275390625	2	522.773668	1043.53278	-1.7079	-0.00089283	-2.1008	-0.0010982	-3.8086	-0.0019911	522.7724229957032	119.86	1.4109	118.52	118.09	119.5	-1.3444					57	26	3	0	0	0	0.028476	1	11273	11273		45.952	18.07	1	63878	+		11847	29906	9703	9714	12978	12978					0.012758397000425248
FLTMPLPFA	9	Oxidation (M)	_FLTM(Oxidation (M))PLPFA_		FLTM(1)PLPFA		FLTM(83)PLPFA	0	0	1		ENSG00000183631|ENST00000371125|PRR32	ENSG00000183631|ENST00000371125|PRR32	ENSG00000183631|ENST00000371125|PRR32	MULTI-MSMS	OvCa99_classI_Rep5	1	526.7811889648438	2	526.777896	1051.54124	2.089	0.0011004	3.9271	0.0020687	6.0161	0.0031691	526.7796733529196	85.975	1.3462	85.975	85.585	86.931	0					90	32	4	0	0	0	0.1595	1	9092	9092		83.287	6.4406	1	6517200			11848	8090	9704	9715	12979	12979		248			0.0175307034501202
FLTNKVDKI	9	Unmodified	_FLTNKVDKI_					0	0	0			REV__ENST00000592201.1_1_18:55335885-55336077:+|nuORF	REV__ENST00000592201.1_1_18:55335885-55336077:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	539.3203735351562	2	539.318774	1076.623	1.2108	0.00065303	0.15	8.0897E-05	1.3608	0.00073392	539.3187828868322	123.49	1.1039	123.49	123.04	124.15	0					66	23	5	0	0	0	0.22621	1	14267	14267		71.877	0.58177	1	1058300	+		11849	27946	9705	9716	12980	12980					0.08774889028472899
FLTSHINLK	9	Unmodified	_FLTSHINLK_					0	0	0		nc|ENSG00000122550|Q8IXQ5-4|KLHL7;nc|ENSG00000122550|Q8IXQ5-2|KLHL7	nc|ENSG00000122550|Q8IXQ5-4|KLHL7	nc|ENSG00000122550|Q8IXQ5-4|KLHL7	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.8104248046875	2	536.811116	1071.60768	-0.85455	-0.00045873	-3.4845	-0.0018705	-4.3391	-0.0023293	536.8091929671385	66.71	1.4792	63.22	62.805	64.284	-3.4902					90	29	6	0	0	0	0.40667	1	4905	4905		51.335	8.9393	1	2051100			11850	14992	9706	9717	12981	12981					0.07474022231258459
FLTSHVALV	9	Unmodified	_FLTSHVALV_					0	0	0		ENST00000494435.5_1_21:47965888-47966146:+|nuORF	ENST00000494435.5_1_21:47965888-47966146:+|nuORF	ENST00000494435.5_1_21:47965888-47966146:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	493.78643798828125	2	493.78711	985.559667	-0.2692	-0.00013293	-0.32819	-0.00016205	-0.59738	-0.00029498	493.7867393201552	121.47	1.3357	121.27	120.95	122.29	-0.19718					61	26	3	0	0	0	0.50066	1	11766	11766		42.474	0	1	176810			11851	12753	9707	9718	12982	12982					0.06630948311237717
FLTSLILTFL	10	Unmodified	_FLTSLILTFL_					0	0	0		ENST00000563829.5_1_15:75145788-75146232:-|nuORF	ENST00000563829.5_1_15:75145788-75146232:-|nuORF	ENST00000563829.5_1_15:75145788-75146232:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.356689453125	2	584.354825	1166.6951	-1.7162	-0.0010029	4.4897	0.0026236	2.7735	0.0016207	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.79213	1	14235	14235		19.997	1.7347	1	833330			11852	13791	9708	9719	12983	12983					0.1184180338218539
FLVAFLFLF	9	Unmodified	_FLVAFLFLF_					0	0	0			REV__ENSG00000187082|ENST00000335479|DEFB106B	REV__ENSG00000187082|ENST00000335479|DEFB106B	MULTI-MSMS	OvCa99_classI_Rep5	1	558.8271484375	2	558.828246	1115.64194	1.7586	0.00098278	-3.3316	-0.0018618	-1.573	-0.00087901	558.826247358705	146.66	0.83188	146.66	146.28	147.11	0					40	16	4	0	0	0	0.32242	1	17172	17172		60.404	0	1	406700	+		11853	22601	9709	9720	12984	12984					0.08874470390173883
FLVAVKLDFV	10	Unmodified	_FLVAVKLDFV_					0	0	0		tr|A0A553SSE6|A0A553SSE6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02985PE=4SV=1	tr|A0A553SSE6|A0A553SSE6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02985PE=4SV=1	tr|A0A553SSE6|A0A553SSE6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02985PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8423461914062	2	575.847167	1149.67978	-3.1773	-0.0018296	-3.5706	-0.0020561	-6.7479	-0.0038857	575.8447773729116	141.87	3.8997	140.86	138.96	142.86	-1.0106					243	78	6	0	0	0	0.69986	1	11799	11799		30.504	3.8107	1	129610			11854	34366	9710	9721	12985	12985					0.11092936584964264
FLVAYCCRF	9	Unmodified	_FLVAYCCRF_					0	0	0		ENSG00000185294|ENST00000329196|SPPL2C	ENSG00000185294|ENST00000329196|SPPL2C	ENSG00000185294|ENST00000329196|SPPL2C	MULTI-SECPEP	OvCa9_classI_Rep4_	4	560.3184814453125	2	561.267173	1120.51979	-0.86762	-0.00048697	-4.0683	-0.0022834	-4.9359	-0.0027704	561.2646719390768	49.674	1.2466	46.532	46.301	47.548	-3.1416					29	23	2	0	0	0	0.027462	1	2813	2813		42.474	14.592	1	29075			11855	8243	9711	9722	12986	12986					-0.03564637955355465
FLVDGGKSVGG	11	Unmodified	_FLVDGGKSVGG_					0	0	0			REV__tr|A0A7D7AE28|A0A7D7AE28_9CLOTROKfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01285PE=4SV=1	REV__tr|A0A7D7AE28|A0A7D7AE28_9CLOTROKfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01285PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	518.27783203125	2	518.277106	1034.53966	2.4911	0.0012911	0.68916	0.00035718	3.1803	0.0016483	518.277368472474	99.082	0.55984	99.082	98.801	99.361	0					23	13	2	0	0	0	0.41656	1	10934	10934		59.931	6.9941	1	1606000	+		11856	32700	9712	9723	12987	12987					0.023771525806296268
FLVDIMEHL	9	Unmodified	_FLVDIMEHL_					0	0	0		ENSG00000178567|ENST00000322716|EPM2AIP1	ENSG00000178567|ENST00000322716|EPM2AIP1	ENSG00000178567|ENST00000322716|EPM2AIP1	MULTI-MSMS	OvCa99_classI_Rep5	1	558.792724609375	2	558.791535	1115.56852	1.6929	0.00094596	0.34707	0.00019394	2.0399	0.0011399	558.7915537109786	143.74	3.1061	143.74	143.41	146.52	0					134	63	4	0	0	0	0.012034	4	16807	16785;16807;16833;16856		162.31	74.551	1	1192900			11857	7761	9713	9724	12988;12989;12990;12991	12989					0.015355538854009865
FLVDMTMHL	9	Unmodified	_FLVDMTMHL_					0	0	0		ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-6|GTF2IRD2	ENSG00000196275|ENST00000451013|GTF2IRD2	ENSG00000196275|ENST00000451013|GTF2IRD2	MULTI-MSMS	OvCa99_classI_Rep5	1	553.7737426757812	2	553.772288	1105.53002	1.4033	0.00077713	1.1672	0.00064638	2.5706	0.0014235	553.7727659913207	132.92	1.6833	132.92	132.7	134.38	0					66	35	3	0	0	0	0.048552	2	15447	15447;15472		119.56	24.956	1	743830			11858	7462	9714	9725	12992;12993	12992					-0.018520750207699166
FLVDRATEV	9	Unmodified	_FLVDRATEV_					0	0	0			REV__ENST00000583366.5_1_17:62082726-62097897:-|nuORF	REV__ENST00000583366.5_1_17:62082726-62097897:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.2836303710938	2	525.284931	1048.55531	-0.11003	-5.7795E-05	-0.50009	-0.00026269	-0.61012	-0.00032049	525.2846666449118	114.93	1.879	113.53	112.83	114.71	-1.3977					101	36	4	0	0	0	0.31747	1	10731	10731		60.972	0	1	1115000	+		11859	25495	9715	9726	12994	12994					0.032974390976505674
FLVEHNLVL	9	Unmodified	_FLVEHNLVL_					0	0	0		KDM3A-LTBP1|1|fusion;KDM3A|p.G1000Vfs*5|1|0.07|ENSG00000115548|chr2:86484062-86484062|G/-|frameshift_variant;KDM3A|p.E1194Afs*14|1|0.36|ENSG00000115548|chr2:86490886-86490890|AGAAG/-|frameshift_variant;ENSG00000115548|ENST00000312912|KDM3A	KDM3A-LTBP1|1|fusion	KDM3A-LTBP1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.3124389648438	2	542.313492	1082.61243	-0.04048	-2.1953E-05	-0.50954	-0.00027633	-0.55002	-0.00029828	542.3131006318025	114.54	1.5851	113.14	112.78	114.37	-1.3977					41	30	2	0	0	0	0.2422	1	10632	10632		69.628	14.123	1	142050			11860	14518	9716	9727	12995	12995					0.07442906374035374
FLVFVLLRA	9	Unmodified	_FLVFVLLRA_					0	0	0			REV__ENST00000476590.1_1_1:207500107-207504494:+|nuORF	REV__ENST00000476590.1_1_1:207500107-207504494:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.7692260742188	2	539.344595	1076.67464	0.50387	0.00027176	-4.3716	-0.0023578	-3.8678	-0.0020861	539.3422535476244	72.394	0.24081	72.394	72.333	72.574	0					9	5	2	0	0	0	0.027462	1	7066	7066		44.117	5.3107	1	167550	+		11861	26373	9717	9728	12996	12996					0.13936677513038376
FLVGFKVSL	9	Unmodified	_FLVGFKVSL_					0	0	0			REV__ENSG00000146386|ENST00000367660|ABRACL	REV__ENSG00000146386|ENST00000367660|ABRACL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	504.3099060058594	2	505.307678	1008.6008	0.4055	0.0002049	-3.7098	-0.0018746	-3.3043	-0.0016697	505.30543015039103	110.52	0.89424	108.92	108.49	109.38	-1.6011					23	12	2	0	0	0	0.027462	1	10122	10122		13.775	0	1	94696	+		11862	20014	9718	9729	12997	12997					0.0968470935069945
FLVGFKVSL	9	Unmodified	_FLVGFKVSL_					0	0	0			REV__ENSG00000146386|ENST00000367660|ABRACL	REV__ENSG00000146386|ENST00000367660|ABRACL	MULTI-MATCH	OvCa9_classI_Rep2	2		2	505.307678	1008.6008	-0.29239	-0.00014775	-3.3	-0.0016675	-3.5924	-0.0018153	505.3058286104458	108.98	1.039	108.75	108.52	109.56	-0.22498	-0.10591	0.00045149	NaN	13.775	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74273	+		11863	20014	9718	9729							0.0968470935069945
FLVGGQKPPL	10	Unmodified	_FLVGGQKPPL_					0	0	0			REV__ENSG00000169231|ENST00000368378|THBS3	REV__ENSG00000169231|ENST00000368378|THBS3	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.3164672851562	2	528.316035	1054.61752	-2.8025	-0.0014806	2.4129	0.0012748	-0.38964	-0.00020585	528.3171633575117	126.52	1.3823	125.1	124.68	126.06	-1.4143					49	27	3	0	0	0	0.58282	1	12059	12059		44.117	1.7207	1	67887	+		11864	21447	9719	9730	12998	12998					0.09239210236660256
FLVIFFMP	8	Unmodified	_FLVIFFMP_					0	0	0		tr|A0A7D6ZFS1|A0A7D6ZFS1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16215PE=4SV=1	tr|A0A7D6ZFS1|A0A7D6ZFS1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16215PE=4SV=1	tr|A0A7D6ZFS1|A0A7D6ZFS1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16215PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	507.2831726074219	2	507.280075	1012.5456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.797	1	79.797	79.297	80.297	0								0	0	0	0.30129	1	8156	8156		43.626	4.6046	1				11865	35522	9720	9731	12999	12999					0.03982579558578436
FLVIMAIELVI	11	Unmodified	_FLVIMAIELVI_					0	0	0			REV__ENSG00000112077|ENST00000371175|RHAG	REV__ENSG00000112077|ENST00000371175|RHAG	MULTI-MSMS	OvCa9_classI_Rep2	2	420.927734375	3	420.926049	1259.75632	-0.40847	-0.00017194	3.3387	0.0014053	2.9302	0.0012334	420.92744774972056	69.031	2.0508	66.41	66.118	68.168	-2.6203					127	40	5	0	0	0	0.36705	1	5461	5461		63.534	3.3669	1	1205300	+		11866	18074	9721	9732	13000	13000					0.13682992089934487
FLVKEFIS	8	Unmodified	_FLVKEFIS_					0	0	0			REV__OR2M5|p.M284Sfs*10|1|0.11|ENSG00000162727|chr1:248145994-248146006|CCCATGCTGAATC/-|frameshift_variant	REV__OR2M5|p.M284Sfs*10|1|0.11|ENSG00000162727|chr1:248145994-248146006|CCCATGCTGAATC/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	491.7735290527344	2	491.784036	981.553519	1.063	0.00052277	-3.0329	-0.0014915	-1.9699	-0.00096875	491.7824558101613	83.485	1.5113	83.485	83.078	84.589	0					84	35	4	0	0	0	0.47599	1	8717	8717		79.939	0	1	8217800	+		11867	20771	9722	9733	13001	13001					0.062004300797070755
FLVKHLVM	8	Oxidation (M)	_FLVKHLVM(Oxidation (M))_		FLVKHLVM(1)		FLVKHLVM(66)	0	0	1			REV__nc|ENSG00000050748|P45984-3|MAPK9	REV__nc|ENSG00000050748|P45984-3|MAPK9	MULTI-MSMS	OvCa9_classI_Rep2	2	501.7921447753906	2	501.793881	1001.57321	-1.2838	-0.00064422	-3.0903	-0.0015507	-4.3741	-0.0021949	501.79220196791607	48.181	1.5395	45.472	45.034	46.573	-2.7097					63	30	3	0	0	0	0.59103	1	2989	2989		65.897	16.687	1	142540	+		11868	28715	9723	9734	13002	13002		631			0.07248482818818047
FLVLKYDN	8	Unmodified	_FLVLKYDN_					0	0	0			REV__tr|A0A553SRB7|A0A553SRB7_NIACILacIfamilyDNA-bindingtranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_00800PE=4SV=1	REV__tr|A0A553SRB7|A0A553SRB7_NIACILacIfamilyDNA-bindingtranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_00800PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.25982666015625	2	506.279118	1010.54368	-1.0936	-0.00055366	-3.512	-0.0017781	-4.6056	-0.0023317	506.2777125267994	80.873	0.68481	78.163	77.858	78.543	-2.7106					15	13	2	0	0	0	0.028476	1	6656	6656		45.952	0	1	24730	+		11869	30716	9724	9735	13003	13003					0.038832420743119656
FLVMMFNI	8	Unmodified	_FLVMMFNI_					0	0	0		tr|A0A7D6VQX9|A0A7D6VQX9_9CLOTCobalttransporterCbiMOS=ClostridiumintestinaleOX=36845GN=cbiMPE=4SV=1	tr|A0A7D6VQX9|A0A7D6VQX9_9CLOTCobalttransporterCbiMOS=ClostridiumintestinaleOX=36845GN=cbiMPE=4SV=1	tr|A0A7D6VQX9|A0A7D6VQX9_9CLOTCobalttransporterCbiMOS=ClostridiumintestinaleOX=36845GN=cbiMPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.2775573730469	2	507.761192	1013.50783	-1.6417	-0.00083357	1.847	0.00093785	0.20538	0.00010428	507.7620088567733	108.83	0.36328	107.11	106.87	107.23	-1.7256					8	6	2	0	0	0	0.028476	1	9947	9947		35.201	13.241	1	5586.4			11870	34877	9725	9736	13004	13004					0.0016174530146599864
FLVNDVNLI	9	Unmodified	_FLVNDVNLI_					0	0	0		tr|A0A7D7A402|A0A7D7A402_9CLOTDUF1062domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23590PE=4SV=1	tr|A0A7D7A402|A0A7D7A402_9CLOTDUF1062domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23590PE=4SV=1	tr|A0A7D7A402|A0A7D7A402_9CLOTDUF1062domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23590PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.3251953125	2	523.797675	1045.5808	1.679	0.00087945	3.9609	0.0020747	5.6399	0.0029542	523.7980601886837	118.01	1.0693	118.01	117.7	118.77	0					30	22	2	0	0	0	0.027118	1	13490	13490		108.09	23.172	1	194750			11871	36133	9726	9737	13005	13005					0.059829136200733046
FLVPFVACIF	10	Unmodified	_FLVPFVACIF_					0	0	0		ENSG00000093183|ENST00000264454|SEC22C;nc|ENSG00000093183|Q9BRL7-2|SEC22C	ENSG00000093183|ENST00000264454|SEC22C	ENSG00000093183|ENST00000264454|SEC22C	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.0062255859375	2	578.317189	1154.61982	1.3796	0.00079782	3.7524	0.0021701	5.1319	0.0029679	578.318744009073	126.77	0.58741	126.77	126.46	127.05	0					15	12	2	0	0	0	0.026839	1	14654	14654		26.796	0	1	45474			11872	1910	9727	9738	13006	13006					0.04869922650095759
FLVPSSLLPV	10	Unmodified	_FLVPSSLLPV_					0	0	0			REV__ENSG00000197563|ENST00000640252|PIGN	REV__ENSG00000197563|ENST00000640252|PIGN	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.2456665039062	2	536.326068	1070.63758	-0.53472	-0.00028678	-1.4911	-0.00079974	-2.0259	-0.0010865	536.3250880975448	113.82	0.54325	113.7	113.47	114.01	-0.11777					13	10	2	0	0	0	0.028193	1	10815	10815		110.34	30.886	1	20795	+		11873	22935	9728	9739	13007	13007					0.10508961176606135
FLVPSSLLPV	10	Unmodified	_FLVPSSLLPV_					0	0	0			REV__ENSG00000197563|ENST00000640252|PIGN	REV__ENSG00000197563|ENST00000640252|PIGN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.2462158203125	2	536.326068	1070.63758	-0.35593	-0.00019089	-2.6327	-0.001412	-2.9886	-0.0016029	536.324559181326	114.87	0.82277	113.47	113.15	113.97	-1.3977					20	15	2	0	0	0	0.027312	1	10683	10683		97.473	25.595	1	38098	+		11874	22935	9728	9739	13008	13008					0.10508961176606135
FLVPVLANI	9	Unmodified	_FLVPVLANI_					0	0	0			REV__tr|A0A553SLR1|A0A553SLR1_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21115PE=4SV=1	REV__tr|A0A553SLR1|A0A553SLR1_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21115PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.7860107421875	2	493.307678	984.600803	0.62842	0.00031001	-3.7002	-0.0018253	-3.0718	-0.0015153	493.3058114178967	122.84	0.4468	121.47	121.26	121.7	-1.3666					12	8	2	0	0	0	0.027462	1	11624	11624		26.796	9.4311	1	7581.4	+		11875	30255	9729	9740	13009	13009					0.10788709350697445
FLVRIFGLCK	10	Unmodified	_FLVRIFGLCK_					0	0	0		L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|453|3|anti-sense	L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|453|3|anti-sense	L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|453|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	598.316162109375	2	598.354637	1194.69472	0.39326	0.00023531	0.43908	0.00026273	0.83234	0.00049803	598.3538130934512	109.45	0.42109	107.72	107.58	108	-1.7256					12	7	2	0	0	0	0.026871	1	10040	10040		45.952	13.997	1	17627			11876	14682	9730	9741	13010	13010					0.10516105181341118
FLVRLGTGLG	10	Unmodified	_FLVRLGTGLG_					0	0	0		nc|ENSG00000108846|O15438-5|ABCC3	nc|ENSG00000108846|O15438-5|ABCC3	nc|ENSG00000108846|O15438-5|ABCC3	MULTI-MSMS	OvCa99_classI_Rep5	1	516.8178100585938	2	516.813659	1031.61277	1.3618	0.0007038	4.3494	0.0022479	5.7113	0.0029517	516.8154854534006	112.49	0.31891	112.49	112.2	112.52	0					11	6	2	0	0	0	0.49558	1	12799	12799		54.776	3.4409	1	347620			11877	14949	9731	9742	13011	13011					0.09822326093899392
FLVRVLIPL	9	Unmodified	_FLVRVLIPL_					0	0	0		nc|ENSG00000068971|Q15173-2|PPP2R5B;ENSG00000068971|ENST00000164133|PPP2R5B	nc|ENSG00000068971|Q15173-2|PPP2R5B	nc|ENSG00000068971|Q15173-2|PPP2R5B	MULTI-MSMS	OvCa99_classI_Rep5	1	535.3621215820312	2	535.360245	1068.70594	1.0251	0.0005488	1.3212	0.00070732	2.3463	0.0012561	535.3607315495724	154.29	1.0933	154.29	153.98	155.07	0					41	21	3	0	0	0	0.58665	1	18072	18072		33.516	3.0119	1	145240			11878	1402	9732	9743	13012	13012					0.17433250547151147
FLVSPHCLP	9	Unmodified	_FLVSPHCLP_					0	0	0		ENST00000464307.5_1_11:64374670-64390737:-|nuORF	ENST00000464307.5_1_11:64374670-64390737:-|nuORF	ENST00000464307.5_1_11:64374670-64390737:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.7593078613281	2	506.767863	1011.52117	-2.5335	-0.0012839	-2.3567	-0.0011943	-4.8902	-0.0024782	506.7667999005474	145.55	0.59479	145.33	145.08	145.68	-0.22696					19	11	2	0	0	0	0.027462	1	14664	14664		26.796	0	1	19103			11879	12247	9733	9744	13013	13013					0.015873194050527673
FLVTIIFSI	9	Unmodified	_FLVTIIFSI_					0	0	0			REV__TAS2R41|p.L146V|1|0.06|ENSG00000221855|chr7:143478308-143478308|C/G|missense_variant	REV__TAS2R41|p.L146V|1|0.06|ENSG00000221855|chr7:143478308-143478308|C/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.285888671875	2	526.823161	1051.63177	-1.0878	-0.00057306	1.2352	0.00065071	0.1474	7.7655E-05	527.3231712916382	103.44	0.64172	102.76	102.43	103.07	-0.68459					14	12	2	0	0	0	0.027462	1	9516	9516		24.203	7.7296	1	9134.5	+		11880	29485	9734	9745	13014	13014					0.10801862664948203
FLVTIIFSI	9	Unmodified	_FLVTIIFSI_					0	0	0			REV__TAS2R41|p.L146V|1|0.06|ENSG00000221855|chr7:143478308-143478308|C/G|missense_variant	REV__TAS2R41|p.L146V|1|0.06|ENSG00000221855|chr7:143478308-143478308|C/G|missense_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	526.823161	1051.63177	-0.27017	-0.00014233	4.2415	0.0022345	3.9714	0.0020922	526.8262122620408	104.22	0.31326	102.79	102.6	102.92	-1.4347	0.0069352	-4.8838E-05	NaN	24.203	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14912	+		11881	29485	9734	9745							0.10801862664948203
FLVTNLIFL	9	Unmodified	_FLVTNLIFL_					0	0	0		ENST00000477642.5_1_2:38525235-38525295:-|nuORF	ENST00000477642.5_1_2:38525235-38525295:-|nuORF	ENST00000477642.5_1_2:38525235-38525295:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3312377929688	2	540.328611	1078.64267	-1.2676	-0.00068491	4.0333	0.0021793	2.7657	0.0014944	540.3307152267141	139.22	4.0818	138.16	137	141.08	-1.0595					200	82	3	0	0	0	0.62352	1	11515	11515		29.15	1.2673	1	55828			11882	12481	9735	9746	13015	13015					0.1064926503922834
FLVTVIHTL	9	Unmodified	_FLVTVIHTL_					0	0	0		ENSG00000136040|ENST00000258526|PLXNC1	ENSG00000136040|ENST00000258526|PLXNC1	ENSG00000136040|ENST00000258526|PLXNC1	MULTI-MSMS	OvCa99_classI_Rep5	1	521.8190307617188	2	521.81841	1041.62227	1.4601	0.00076191	0.73002	0.00038094	2.1901	0.0011428	521.8186789221546	120.16	1.2695	120.16	119.83	121.1	0					59	29	4	0	0	0	0.0082752	2	13817	13794;13817		204.1	90.928	1	1700100			11883	4449	9736	9747	13016;13017	13017					0.1031209437940106
FLVVACLKVK	10	Carbamidomethyl (C)	_FLVVAC(Carbamidomethyl (C))LKVK_	FLVVAC(1)LKVK		FLVVAC(68)LKVK		0	1	0		nc|ENSG00000186153|Q9NZC7-6|WWOX	nc|ENSG00000186153|Q9NZC7-6|WWOX	nc|ENSG00000186153|Q9NZC7-6|WWOX	MULTI-MSMS	OvCa99_classI_Rep5	1	588.8632202148438	2	588.862295	1175.71004	1.16	0.00068307	-1.7493	-0.0010301	-0.58936	-0.00034705	588.8609464850482	145.81	0.89632	145.81	145.48	146.38	0					37	17	3	0	0	0	0.39971	1	17061	17061		68.485	12.98	1	141500			11884	15221	9737	9748	13018	13018	173				0.1292097197849671
FLVVASVSLL	10	Unmodified	_FLVVASVSLL_					0	0	0		ENSG00000123338|ENST00000293373|NCKAP1L;nc|ENSG00000123338|P55160-2|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2969360351562	2	524.326068	1046.63758	1.2296	0.00064471	-1.5829	-0.00082994	-0.35327	-0.00018523	524.3251297423833	133.33	0.40701	133.33	133.13	133.53	0					13	8	2	0	0	0	0.026982	1	15490	15490		30.504	0	1	157430			11885	3588	9738	9749	13019	13019					0.116129611766155
FLVVKIILH	9	Unmodified	_FLVVKIILH_					0	0	0			REV__nc|ENSG00000074855|Q9HCE9-2|ANO8	REV__nc|ENSG00000074855|Q9HCE9-2|ANO8	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.3460693359375	2	541.360245	1080.70594	-0.48991	-0.00026522	3.893	0.0021075	3.4031	0.0018423	541.3627114587039	82.85	0.29997	80.554	80.431	80.731	-2.2963					8	5	2	0	0	0	0.027462	1	4685	4685		45.952	7.1458	1	17388	+		11886	16956	9739	9750	13020	13020					0.16881250547135096
FLVVLLHPL	9	Unmodified	_FLVVLLHPL_					0	0	0			REV__ENSG00000196772|ENST00000641093|OR14A16	REV__ENSG00000196772|ENST00000641093|OR14A16	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.2838745117188	2	525.839146	1049.66374	0.068422	3.5979E-05	-4.4881	-0.00236	-4.4197	-0.002324	525.8367031108221	113.71	1.7757	112.64	112.25	114.02	-1.0753					72	34	3	0	0	0	0.027462	1	8464	8464		49.211	23.761	1	133950	+		11887	22863	9740	9751	13021	13021					0.1408927513875824
FLVVLLHPL	9	Unmodified	_FLVVLLHPL_					0	0	0			REV__ENSG00000196772|ENST00000641093|OR14A16	REV__ENSG00000196772|ENST00000641093|OR14A16	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.2836303710938	2	525.839146	1049.66374	0.017548	9.2276E-06	-4.2594	-0.0022398	-4.2419	-0.0022306	525.8368001771031	114.12	1.6848	112.67	112.34	114.02	-1.4461					77	32	4	0	0	0	0.027462	1	10731	10731		49.211	12.052	1	141600	+		11888	22863	9740	9751	13022	13022					0.1408927513875824
FLVVLLLFEG	10	Unmodified	_FLVVLLLFEG_					0	0	0			REV__tr|A0A553STI8|A0A553STI8_NIACISporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_04940PE=3SV=1	REV__tr|A0A553STI8|A0A553STI8_NIACISporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_04940PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8475952148438	2	575.349543	1148.68453	-4.8722	-0.0028032	-2.1116	-0.0012149	-6.9839	-0.0040182	575.3482857575835	154.87	1.1278	154.64	154.34	155.47	-0.22696					59	30	3	0	0	0	0.80532	1	15832	15832		18.324	2.6826	1	84487	+		11889	30969	9741	9752	13023	13023					0.11613820727757229
FLVVLLLFEG	10	Unmodified	_FLVVLLLFEG_					0	0	0			REV__tr|A0A553STI8|A0A553STI8_NIACISporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_04940PE=3SV=1	REV__tr|A0A553STI8|A0A553STI8_NIACISporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_04940PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	575.3452758789062	2	575.349543	1148.68453	-6.2917	-0.0036199	-0.91883	-0.00052865	-7.2105	-0.0041486	575.3489585356984	154.97	1.0558	153.9	153.56	154.61	-1.073					68	25	4	0	0	0	0.76627	1	13294	13294		23.042	4.7181	1	137860	+		11890	30969	9741	9752	13024	13024					0.11613820727757229
FLVWISTEL	9	Unmodified	_FLVWISTEL_					0	0	0			REV__tr|A0A553SRW6|A0A553SRW6_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_01985PE=4SV=1	REV__tr|A0A553SRW6|A0A553SRW6_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_01985PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	554.306884765625	2	554.307875	1106.6012	1.5107	0.0008374	-2.7311	-0.0015139	-1.2204	-0.00067646	554.306197176907	93.43	1.2117	93.43	93.136	94.348	0					80	28	4	0	0	0	0.27546	1	10127	10127		65.803	2.2693	1	6993500	+		11891	30770	9742	9753	13025	13025					0.0521608427989122
FLVYDNQPTP	10	Unmodified	_FLVYDNQPTP_					0	0	0			REV__ENST00000519911.5_1_5:172461592-172461628:+|nuORF	REV__ENST00000519911.5_1_5:172461592-172461628:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	597.328857421875	2	597.295496	1192.57644	-0.28449	-0.00016993	-2.9282	-0.001749	-3.2127	-0.0019189	597.2937479483943	99.592	3.0185	97.266	95.575	98.593	-2.3253					101	56	4	0	0	0	0.026994	1	8861	8861		25.574	0	1	203600	+		11892	27050	9743	9754	13026	13026					-0.012145955935011443
FLWDEGFHQL	10	Unmodified	_FLWDEGFHQL_					0	0	0		ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;MOGS|p.P775Lfs*21|1|0.12|ENSG00000115275|chr2:74461466-74461467|-/CAAATCTGGCAAAAGCAATAGAGTTCAA|frameshift_variant;ENSG00000115275|ENST00000448666|MOGS	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	646.3114013671875	2	646.308938	1290.60332	1.629	0.0010528	0.8531	0.00055137	2.4821	0.0016042	646.3093669389735	133.06	1.2591	133.06	132.7	133.96	0					68	26	3	0	0	0	0.1722	2	15464	15464;15488		98.629	29.002	1	1496300			11893	3081	9744	9755	13027;13028	13027					-0.030354869822986075
FLWFILGNY	9	Unmodified	_FLWFILGNY_					0	0	0		nc|ENSG00000281106|A0A1B0GTI8-2|TMEM272;ENSG00000281106|ENST00000629372|TMEM272	nc|ENSG00000281106|A0A1B0GTI8-2|TMEM272	nc|ENSG00000281106|A0A1B0GTI8-2|TMEM272	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.3839111328125	2	586.810585	1171.60662	1.863	0.0010932	-3.5631	-0.0020909	-1.7001	-0.00099766	586.8084317834578	82.881	0.89867	82.881	82.222	83.12	0					30	20	2	0	0	0	0.027462	1	8538	8538		40.573	11.423	1	354620			11894	9603	9745	9756	13029	13029					0.027678078623921465
FLWFLLSL	8	Unmodified	_FLWFLLSL_					0	0	0		SUN2|p.P219S|1|0.09|ENSG00000100242|chr22:38748743-38748743|G/A|missense_variant	SUN2|p.P219S|1|0.09|ENSG00000100242|chr22:38748743-38748743|G/A|missense_variant	SUN2|p.P219S|1|0.09|ENSG00000100242|chr22:38748743-38748743|G/A|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	519.7987060546875	2	519.804771	1037.59499	0.43916	0.00022828	-1.9501	-0.0010137	-1.511	-0.00078541	519.8037235427596	139.73	1.9733	139.73	139.41	141.39	0					99	40	4	0	0	0	0.65582	1	16293	16293		52.299	7.7681	1	3248300			11895	32928	9746	9757	13030	13030					0.07769610839045527
FLWLLIPS	8	Unmodified	_FLWLLIPS_					0	0	0		ENST00000545315.1_1_15:83331329-83331932:-|nuORF	ENST00000545315.1_1_15:83331329-83331932:-|nuORF	ENST00000545315.1_1_15:83331329-83331932:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2810974121094	2	494.796946	987.57934	1.7372	0.00085956	-1.2911	-0.00063881	0.44613	0.00022074	494.7962057408543	91.398	0.32915	91.398	91.213	91.542	0					11	7	2	0	0	0	0.028476	1	9840	9840		35.201	0	1	107420			11896	13522	9747	9758	13031	13031					0.08505324321993157
FLWMRSIL	8	Unmodified	_FLWMRSIL_					0	0	0		L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|252|2|anti-sense	L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|252|2|anti-sense	L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|252|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.7968139648438	2	533.29933	1064.58411	-3.0979	-0.0016521	1.465	0.0007813	-1.6329	-0.00087081	533.3000428448557	148.75	0.74625	147.32	146.78	147.52	-1.4344					19	14	2	0	0	0	0.028476	1	14622	14622		15.636	0	1	13315			11897	14746	9748	9759	13032	13032					0.05439885193095506
FLWNKCCQ	8	Unmodified	_FLWNKCCQ_					0	0	0		ENST00000493442.1_1_X:103411396-103420351:+|nuORF	ENST00000493442.1_1_X:103411396-103420351:+|nuORF	ENST00000493442.1_1_X:103411396-103420351:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.283447265625	2	521.235873	1040.45719	-1.0845	-0.0005653	-0.40006	-0.00020853	-1.4846	-0.00077382	521.2344200723396	70.989	0.47412	67.533	67.203	67.677	-3.4563					12	9	2	0	0	0	0.028476	1	5365	5365		33.516	9.9929	1	21308			11898	12735	9749	9760	13033	13033					-0.061417840235435506
FLWQEGHTCH	10	Unmodified	_FLWQEGHTCH_					0	0	0		tr|A0A553SIZ9|A0A553SIZ9_NIACIProline--tRNAligaseOS=NialliacirculansOX=1397GN=proSPE=3SV=1	tr|A0A553SIZ9|A0A553SIZ9_NIACIProline--tRNAligaseOS=NialliacirculansOX=1397GN=proSPE=3SV=1	tr|A0A553SIZ9|A0A553SIZ9_NIACIProline--tRNAligaseOS=NialliacirculansOX=1397GN=proSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	629.2777709960938	2	629.277115	1256.53968	-1.1065	-0.00069631	2.5109	0.0015801	1.4044	0.00088375	629.2787761772053	118.5	2.2976	117.16	116.89	119.19	-1.3444					117	43	5	0	0	0	0.6104	1	11152	11152		40.778	1.5253	1	542100			11899	33446	9750	9761	13034	13034					-0.07833170691014857
FLWTPGVKL	9	Unmodified	_FLWTPGVKL_					0	0	0			REV__ENST00000370651.5_1_6:64290538-64290784:+|nuORF	REV__ENST00000370651.5_1_6:64290538-64290784:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	530.809814453125	2	530.813128	1059.6117	0.34487	0.00018306	-0.42158	-0.00022378	-0.076712	-4.072E-05	530.8127589207236	128.23	1.7294	128.01	127.69	129.42	-0.22696					65	34	3	0	0	0	0.50149	1	12583	12583		42.396	0	1	105520	+		11900	24966	9751	9762	13035	13035					0.0842811172499296
FLWWSLAL	8	Unmodified	_FLWWSLAL_					0	0	0		AluSg7_dup2598|chr5:139545417-139545723:-|1.2409937977611976|0.1210314063817212|3.36|414.0|17|3|anti-sense	AluSg7_dup2598|chr5:139545417-139545723:-|1.2409937977611976|0.1210314063817212|3.36|414.0|17|3|anti-sense	AluSg7_dup2598|chr5:139545417-139545723:-|1.2409937977611976|0.1210314063817212|3.36|414.0|17|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	518.2891235351562	2	518.286746	1034.55894	1.2675	0.00065691	0.30619	0.0001587	1.5737	0.00081561	518.2868395032658	127.57	0.58858	127.57	127.32	127.9	0					25	12	3	0	0	0	0.69415	1	14772	14772		44.531	0.90502	1	258240			11901	73	9752	9763	13036	13036					0.04304153662178578
FLWYLYLD	8	Unmodified	_FLWYLYLD_					0	0	0		ENSG00000214360|ENST00000398186|EFCAB9	ENSG00000214360|ENST00000398186|EFCAB9	ENSG00000214360|ENST00000398186|EFCAB9	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.888671875	2	566.789318	1131.56408	2.3161	0.0013127	0.48439	0.00027455	2.8005	0.0015873	566.7897920529382	118.04	0.31929	118.04	117.88	118.2	0					9	6	2	0	0	0	0.028476	1	13513	13513		21.702	8.7432	1	57903			11902	9172	9753	9764	13037	13037					0.0035641273411783914
FLYAGHIFL	9	Unmodified	_FLYAGHIFL_					0	0	0		ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	MULTI-MSMS	OvCa99_classI_Rep5	1	540.799072265625	2	540.797478	1079.5804	1.6673	0.00090169	0.23106	0.00012495	1.8984	0.0010266	540.7975053909148	126.84	1.347	126.84	126.42	127.76	0					79	29	4	0	0	0	0.088217	2	14681	14657;14681		100.36	42.908	1	1918000			11903	4108	9754	9765	13038;13039	13039					0.04379538690886875
FLYDDNQRV	9	Unmodified	_FLYDDNQRV_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-MSMS	OvCa99_classI_Rep5	1	585.2837524414062	2	585.28292	1168.55129	1.5635	0.00091506	0.60671	0.00035509	2.1702	0.0012702	585.283185609368	78.724	0.85456	78.724	78.457	79.311	0					66	20	4	0	0	0	0.053172	2	8018	7985;8018		116.9	23.708	1	6475000			11904	1564;4088	9755	9766	13040;13041	13041					-0.02624650396069228
FLYDDNQRV	9	Unmodified	_FLYDDNQRV_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-MATCH	OvCa9_classI_Rep3	3		2	585.28292	1168.55129	-1.8051	-0.0010565	1.5925	0.00093206	-0.2126	-0.00012443	585.2837593921179	81.152	1.4706	78.83	78.492	79.962	-2.3226	0.012645	0.0006058	NaN	116.9	81	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307050			11905	1564;4088	9755	9766							-0.02624650396069228
FLYDDNQRV	9	Unmodified	_FLYDDNQRV_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	585.28292	1168.55129	-1.3581	-0.00079488	1.1287	0.00066063	-0.22937	-0.00013424	585.2833884936257	81.607	1.1633	78.897	78.641	79.804	-2.7106	0.079852	6.2952E-05	NaN	116.9	60	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	293700			11906	1564;4088	9755	9766							-0.02624650396069228
FLYDLLTLAM	10	Unmodified	_FLYDLLTLAM_					0	0	0			REV__nc|ENSG00000172530|Q8N9N5-3|BANP	REV__nc|ENSG00000172530|Q8N9N5-3|BANP	MULTI-MSMS	OvCa9_classI_Rep3	3	600.3232421875	2	600.322668	1198.63078	-2.9075	-0.0017454	4.3538	0.0026137	1.4464	0.00086829	600.3251735089444	151.69	1.358	150.74	150.35	151.71	-0.95645					71	26	4	0	0	0	0.64063	1	12931	12931		37.159	1.5408	1	229880	+		11907	21707	9756	9767	13042	13042					0.03941280233721045
FLYDVVKSL	9	Unmodified	_FLYDVVKSL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;COL6A3|p.T1393Cfs*9|1|0.09|ENSG00000163359|chr2:237371828-237371840|GCTCCCGGAAGGT/-|frameshift_variant;COL6A3|p.K1001Nfs*34|1|0.23|ENSG00000163359|chr2:237376800-237376839|TTTTAAGAGATTCACTATCTGTGGATGAAGATCTCCAATC/-|frameshift_variant;COL6A3|p.L475Ifs*14|1|0.13|ENSG00000163359|chr2:237381374-237381389|CCTGTCCGATTTCCAG/-|frameshift_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	542.3096313476562	2	542.307875	1082.6012	1.0452	0.00056682	1.6414	0.00089016	2.6866	0.001457	542.3084679663518	124.39	1.1037	124.39	123.97	125.07	0					51	23	3	0	0	0	0.10502	2	14374	14350;14374		95.815	19.041	1	522130			11908	6293	9757	9768	13043;13044	13044					0.06320084279923321
FLYFNQDL	8	Unmodified	_FLYFNQDL_					0	0	0		ENST00000221130.9_1_8:30536895-30536961:-|nuORF	ENST00000221130.9_1_8:30536895-30536961:-|nuORF	ENST00000221130.9_1_8:30536895-30536961:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7962036132812	2	530.260925	1058.5073	2.4769	0.0013134	-2.861	-0.0015171	-0.38412	-0.00020368	530.2593305666198	75.904	0.99931	75.904	75.601	76.6	0					34	24	3	0	0	0	0.028476	1	7633	7633		31.955	0	1	772030			11909	9689	9758	9769	13045	13045					-0.019616348223962632
FLYGLLEEV	9	Unmodified	_FLYGLLEEV_					0	0	0		SLC11A1|p.D543V|1|0.56|ENSG00000018280|chr2:218395010-218395010|A/T|missense_variant	SLC11A1|p.D543V|1|0.56|ENSG00000018280|chr2:218395010-218395010|A/T|missense_variant	SLC11A1|p.D543V|1|0.56|ENSG00000018280|chr2:218395010-218395010|A/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	541.7921752929688	2	541.792058	1081.56956	1.202	0.00065124	-2.075	-0.0011242	-0.87297	-0.00047297	541.7908238032559	145.29	0.54169	145.29	145.04	145.58	0					25	11	3	0	0	0	0.39645	1	16988	16988		52.299	3.0884	1	121920			11910	32820	9759	9770	13046	13046					0.03204091525935837
FLYHVAYV	8	Unmodified	_FLYHVAYV_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ENST00000538984.1_1_12:26564247-26572125:-|nuORF	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MULTI-MSMS	OvCa99_classI_Rep5	1	506.268310546875	2	506.268553	1010.52255	-0.057653	-2.9188E-05	-4.2842	-0.0021689	-4.3418	-0.0021981	506.2663293704449	69.152	0.77587	69.152	68.815	69.591	0					46	18	4	0	0	0	0.64315	1	6568	6568		54.895	6.979	1	2892700			11911	3571	9760	9771	13047	13047					0.017712767654643358
FLYIIKTK	8	Unmodified	_FLYIIKTK_					0	0	0		ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;nc|ENSG00000146842|Q96SK2-3|TMEM209	ENSG00000146842|ENST00000397622|TMEM209	ENSG00000146842|ENST00000397622|TMEM209	MULTI-MSMS	OvCa9_classI_Rep3	3	513.82470703125	2	513.323328	1024.6321	1.1851	0.00060836	2.3203	0.0011911	3.5055	0.0017994	513.8246530993847	67.449	2.102	64.562	64.137	66.239	-2.8873					146	41	6	0	0	0	0.73626	1	2837	2837		33.516	0	1	2025700			11912	5310	9761	9772	13048	13048					0.12077282384802857
FLYKIIDEL	9	Unmodified	_FLYKIIDEL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;COL6A3|p.T1393Cfs*9|1|0.09|ENSG00000163359|chr2:237371828-237371840|GCTCCCGGAAGGT/-|frameshift_variant;COL6A3|p.K1001Nfs*34|1|0.23|ENSG00000163359|chr2:237376800-237376839|TTTTAAGAGATTCACTATCTGTGGATGAAGATCTCCAATC/-|frameshift_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	577.330322265625	2	577.328808	1152.64306	1.2199	0.00070426	0.31937	0.00018438	1.5392	0.00088864	577.3288770850424	130.08	6.9884	130.08	128.32	135.31	0					388	149	8	0	0	0	0.014964	5	15117	15081;15117;15147;15171;15196		153.04	0	1	7493100			11913	6293	9762	9773	13049;13050;13051;13052;13053	13050					0.07284639968452211
FLYPFLSHL	9	Unmodified	_FLYPFLSHL_					0	0	0		ENSG00000132205|ENST00000254528|EMILIN2;ENST00000308080.9_1_18:2906258-2913399:+|nuORF	ENSG00000132205|ENST00000254528|EMILIN2	ENSG00000132205|ENST00000254528|EMILIN2	MULTI-MSMS	OvCa99_classI_Rep5	1	568.81201171875	2	568.810585	1135.60662	0.71686	0.00040776	1.6586	0.00094345	2.3755	0.0013512	568.811315350799	141.21	2.2971	141.21	140.63	142.93	0					115	45	4	0	0	0	0.19716	3	16503	16481;16503;16528		76.847	8.3619	1	738210			11914	4117	9763	9774	13054;13055;13056	13055					0.04423807862394824
FLYPFPLAL	9	Unmodified	_FLYPFPLAL_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-MSMS	OvCa99_classI_Rep5	1	540.8099975585938	2	540.810054	1079.60555	0.37888	0.0002049	-0.063065	-3.4106E-05	0.31581	0.0001708	540.8099113049583	162.5	0.22514	162.5	162.43	162.65	0					10	6	2	0	0	0	0.32242	1	19063	19063		60.404	0.10967	1	228670			11915	6685	9764	9775	13057	13057					0.06893593493464323
FLYPKKIS	8	Unmodified	_FLYPKKIS_					0	0	0		ENSG00000184344|ENST00000329913|GDF3	ENSG00000184344|ENST00000329913|GDF3	ENSG00000184344|ENST00000329913|GDF3	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.77178955078125	2	498.299853	994.585153	-1.254	-0.00062489	-2.4595	-0.0012255	-3.7135	-0.0018504	498.29898904690276	101.16	0.54543	100.39	100.02	100.57	-0.76401					17	10	2	0	0	0	0.028476	1	9271	9271		40.573	1.7665	1	17026			11916	8146	9765	9776	13058	13058					0.08764422833655772
FLYSDEVQI	9	Unmodified	_FLYSDEVQI_					0	0	0		nc|ENSG00000064726|Q9H0C5-2|BTBD1;ENSG00000064726|ENST00000261721|BTBD1;ENSG00000133243|ENST00000255608|BTBD2	nc|ENSG00000064726|Q9H0C5-2|BTBD1	nc|ENSG00000064726|Q9H0C5-2|BTBD1	MULTI-MSMS	OvCa99_classI_Rep5	1	557.27783203125	2	557.276772	1112.53899	2.0873	0.0011632	0.080895	4.5081E-05	2.1682	0.0012083	557.2767371263335	125.97	1.4728	125.97	125.67	127.14	0					97	31	4	0	0	0	0.010619	1	14569	14569		166.78	79.028	1	2548600			11917	1305	9766	9777	13059	13059					-0.012776868590890444
FLYSDEVQI	9	Unmodified	_FLYSDEVQI_					0	0	0		nc|ENSG00000064726|Q9H0C5-2|BTBD1;ENSG00000064726|ENST00000261721|BTBD1;ENSG00000133243|ENST00000255608|BTBD2	nc|ENSG00000064726|Q9H0C5-2|BTBD1	nc|ENSG00000064726|Q9H0C5-2|BTBD1	MULTI-MSMS	OvCa9_classI_Rep2	2	557.276611328125	2	557.276772	1112.53899	1.0113	0.00056355	1.3888	0.00077397	2.4001	0.0013375	557.2758703846443	124.85	1.6313	124.61	124.27	125.9	-0.2359					76	32	5	0	0	0	0.35444	1	12144	12144		56.721	10.769	1	94202			11918	1305	9766	9777	13060	13060					-0.012776868590890444
FLYSDEVQI	9	Unmodified	_FLYSDEVQI_					0	0	0		nc|ENSG00000064726|Q9H0C5-2|BTBD1;ENSG00000064726|ENST00000261721|BTBD1;ENSG00000133243|ENST00000255608|BTBD2	nc|ENSG00000064726|Q9H0C5-2|BTBD1	nc|ENSG00000064726|Q9H0C5-2|BTBD1	MULTI-MSMS	OvCa9_classI_Rep3	3	557.275390625	2	557.276772	1112.53899	1.1048	0.00061567	1.5197	0.00084692	2.6245	0.0014626	557.2760549947894	125.49	1.3009	124.44	124.11	125.41	-1.0519					74	24	5	0	0	0	0.48324	1	9770	9770		44.117	6.9577	1	92512			11919	1305	9766	9777	13061	13061					-0.012776868590890444
FLYSDEVQI	9	Unmodified	_FLYSDEVQI_					0	0	0		nc|ENSG00000064726|Q9H0C5-2|BTBD1;ENSG00000064726|ENST00000261721|BTBD1;ENSG00000133243|ENST00000255608|BTBD2	nc|ENSG00000064726|Q9H0C5-2|BTBD1	nc|ENSG00000064726|Q9H0C5-2|BTBD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.2759399414062	2	557.276772	1112.53899	-1.5119	-0.00084257	3.5597	0.0019837	2.0478	0.0011412	557.2775555479442	125.75	1.3237	124.33	124.04	125.36	-1.4143					70	26	4	0	0	0	0.18193	2	11960	11950;11960		79.451	26.1	1	98782			11920	1305	9766	9777	13062;13063	13063					-0.012776868590890444
FMESLTLGLL	10	Unmodified	_FMESLTLGLL_					0	0	0		ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	MULTI-MSMS	OvCa9_classI_Rep2	2	562.3092651367188	2	562.307018	1122.59948	0.74232	0.00041741	2.2646	0.0012734	3.0069	0.0016908	562.3082366051352	111.6	2.8604	111.46	110.14	113	-0.13961					133	57	4	0	0	0	0.20801	3	10510	10510;10516;10521		93.195	11.271	1	604240			11921	6187	9767	9778	13064;13065;13066	13064					0.04308707199652417
FMESLTLGLL	10	Unmodified	_FMESLTLGLL_					0	0	0		ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	MULTI-MSMS	OvCa9_classI_Rep3	3	562.3074951171875	2	562.307018	1122.59948	1.5394	0.00086559	1.2234	0.00068794	2.7628	0.0015535	562.3077246081845	112.34	2.7945	111.26	110.13	112.92	-1.0753					115	55	5	0	0	0	0.22395	1	8206	8206		90.777	8.4716	1	1502900			11922	6187	9767	9778	13067	13067					0.04308707199652417
FMESLTLGLL	10	Unmodified	_FMESLTLGLL_					0	0	0		ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3087158203125	2	562.307018	1122.59948	1.6081	0.00090426	1.0727	0.00060321	2.6809	0.0015075	562.3076275952775	112.77	1.839	111.26	110.53	112.37	-1.5111					103	36	5	0	0	0	0.28845	1	10412	10412		82.241	10.945	1	1731000			11923	6187	9767	9778	13068	13068					0.04308707199652417
FMFGQKLNV	9	Unmodified	_FMFGQKLNV_					0	0	0		ENSG00000104824|ENST00000221419|HNRNPL;nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000595443.5_1_19:39327988-39329682:-|nuORF;ENST00000595164.5_1_19:39327364-39331218:-|nuORF;ENST00000597731.1_1_19:39327364-39331218:-|nuORF;ENST00000601664.1_1_19:39329532-39330816:-|nuORF;ENST00000568980.1_1_15:34781237-34781759:-|nuORF;ENST00000421896.1_1_6:7481658-7482147:-|nuORF	ENSG00000104824|ENST00000221419|HNRNPL	ENSG00000104824|ENST00000221419|HNRNPL	MULTI-MSMS	OvCa99_classI_Rep5	1	542.2855224609375	2	542.28642	1082.55829	0.89793	0.00048693	0.57408	0.00031131	1.472	0.00079825	542.2865414321759	105.74	0.39239	105.74	105.44	105.83	0					20	8	3	0	0	0	0.12365	1	11881	11881		90.777	34.056	1	1510700			11924	2394	9768	9779	13069	13069					0.020309909508114288
FMFIGFIL	8	Unmodified	_FMFIGFIL_					0	0	0		ENSG00000075429|ENST00000533854|CACNG5	ENSG00000075429|ENST00000533854|CACNG5	ENSG00000075429|ENST00000533854|CACNG5	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.8172302246094	2	494.27225	986.529947	1.3796	0.0006819	-0.90933	-0.00044946	0.47027	0.00023244	494.27168460009676	109.08	0.74691	109.08	108.8	109.55	0					36	16	4	0	0	0	0.028476	1	12349	12349		54.895	21.402	1	812970			11925	1533	9769	9780	13070	13070					0.03614293041562178
FMFIGFIL	8	Unmodified	_FMFIGFIL_					0	0	0		ENSG00000075429|ENST00000533854|CACNG5	ENSG00000075429|ENST00000533854|CACNG5	ENSG00000075429|ENST00000533854|CACNG5	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	494.27225	986.529947	0.99175	0.0004902	-4.2652	-0.0021082	-3.2735	-0.001618	494.27020584771105	110.42	0.47367	108.82	108.49	108.96	-1.6011	-0.13318	-0.0031364	NaN	43.626	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7120.9			11926	1533	9769	9780							0.03614293041562178
FMIILGVF	8	Unmodified	_FMIILGVF_					0	0	0		nc|ENSG00000171603|O94985-2|CLSTN1;ENSG00000171603|ENST00000377298|CLSTN1;ENST00000477264.1_1_1:9790568-9793533:-|nuORF	nc|ENSG00000171603|O94985-2|CLSTN1	nc|ENSG00000171603|O94985-2|CLSTN1	MULTI-MSMS	OvCa9_classI_Rep2	2	470.27215576171875	2	470.27225	938.529947	-2.3445	-0.0011025	1.966	0.00092456	-0.37846	-0.00017798	470.2730881944102	145.73	1.4391	145.51	145.08	146.52	-0.22696					62	28	4	0	0	0	0.7543	1	14704	14704		24.504	0	1	115570			11927	7217	9770	9781	13071	13071					0.058222930415468
FMIWQFDL	8	Unmodified	_FMIWQFDL_					0	0	0			REV__tr|A0A553SPL7|A0A553SPL7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_26450PE=4SV=1	REV__tr|A0A553SPL7|A0A553SPL7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_26450PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	550.2708740234375	2	550.267696	1098.52084	1.5992	0.00087999	3.4596	0.0019037	5.0588	0.0027837	550.2693378474615	135.94	0.79874	135.94	135.69	136.49	0					40	16	4	0	0	0	0.45246	1	15852	15852		82.305	15.876	1	700690	+		11928	30548	9771	9782	13072	13072					-0.02448100314813928
FMIYLQNI	8	Unmodified	_FMIYLQNI_					0	0	0		tr|A0A553SJ75|A0A553SJ75_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_16225PE=4SV=1	tr|A0A553SJ75|A0A553SJ75_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_16225PE=4SV=1	tr|A0A553SJ75|A0A553SJ75_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_16225PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.7603759765625	2	521.275521	1040.53649	0.49685	0.00025899	-3.0047	-0.0015663	-2.5079	-0.0013073	521.273913836044	156.42	1.0573	156.42	156.09	157.15	0					25	20	2	0	0	0	0.028476	1	18411	18411		52.299	5.5327	1	35350			11929	33471	9772	9783	13073	13073					0.017841862022578425
FMLDLYHAM	9	Unmodified	_FMLDLYHAM_					0	0	0		nc|ENSG00000116985|P34820-2|BMP8B;ENSG00000183682|ENST00000331593|BMP8A;ENSG00000116985|ENST00000372827|BMP8B	nc|ENSG00000116985|P34820-2|BMP8B	nc|ENSG00000116985|P34820-2|BMP8B	MULTI-MSMS	OvCa99_classI_Rep5	1	570.7637939453125	2	570.764463	1139.51437	-0.68728	-0.00039227	-0.6541	-0.00037334	-1.3414	-0.00076561	570.7639375463239	41.921	5.4029	41.921	39.711	45.114	0					302	122	5	0	0	0	0.32337	1	2881	2881		60.294	10.852	1	2972500			11930	3225	9773	9784	13074	13074					-0.04980361537832323
FMLIIQLIN	9	Unmodified	_FMLIIQLIN_					0	0	0			REV__tr|A0A553SUQ2|A0A553SUQ2_NIACIPotassium-transportingATPasepotassium-bindingsubunitOS=NialliacirculansOX=1397GN=kdpAPE=3SV=1	REV__tr|A0A553SUQ2|A0A553SUQ2_NIACIPotassium-transportingATPasepotassium-bindingsubunitOS=NialliacirculansOX=1397GN=kdpAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	553.3154296875	2	552.827921	1103.64129	-0.13055	-7.2171E-05	-3.0615	-0.0016925	-3.1921	-0.0017647	552.8261649915097	107.08	1.5658	105.81	105.32	106.89	-1.267					44	30	2	0	0	0	0.027417	1	7526	7526		65.803	21.272	1	67974	+		11931	31107	9774	9785	13075	13075					0.09361307678841513
FMLLGTLCE	9	Carbamidomethyl (C),Oxidation (M)	_FM(Oxidation (M))LLGTLC(Carbamidomethyl (C))E_	FMLLGTLC(1)E	FM(1)LLGTLCE	FMLLGTLC(50)E	FM(50)LLGTLCE	0	1	1		ENSG00000253485|ENST00000518069|PCDHGA5;nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5;PCDHGA5|p.V164Cfs*24|1|0.17|ENSG00000253485|chr5:141364814-141364815|-/T|frameshift_variant	ENSG00000253485|ENST00000518069|PCDHGA5	ENSG00000253485|ENST00000518069|PCDHGA5	MULTI-MSMS	OvCa99_classI_Rep5	1	550.2640380859375	2	550.261753	1098.50895	0.70938	0.00039034	2.118	0.0011654	2.8274	0.0015558	550.2629676265304	151.14	1.9258	151.14	150.69	152.62	0					64	41	3	0	0	0	0.42057	1	17683	17683		50.025	9.2464	1	339220			11932	9432	9775	9786	13076	13076	94	282			-0.036360851202744016
FMLPDPQNISL	11	Unmodified	_FMLPDPQNISL_					0	0	0		ENST00000423257.1_1_17:17360441-17360570:+|nuORF;ENST00000485209.5_1_1:184027321-184041978:+|nuORF;ENSG00000198860|ENST00000645668|TSEN15	ENST00000423257.1_1_17:17360441-17360570:+|nuORF	ENST00000423257.1_1_17:17360441-17360570:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	637.82763671875	2	637.826106	1273.63766	1.1384	0.0007261	1.1571	0.00073802	2.2955	0.0014641	637.8266044779158	152.91	1.3781	152.91	152.55	153.93	0					57	30	3	0	0	0	0.18846	1	17923	17923		81.525	23.295	1	506250			11933	8893	9776	9787	13077	13077					0.011785931143094786
FMLPSCGLKPC	11	Carbamidomethyl (C),Oxidation (M)	_FM(Oxidation (M))LPSC(Carbamidomethyl (C))GLKPC_	FMLPSC(0.994)GLKPC(0.006)	FM(1)LPSCGLKPC	FMLPSC(22)GLKPC(-22)	FM(51)LPSCGLKPC	0	1	1		ENST00000547616.2_1_14:19475147-19475555:-|nuORF;ENST00000438441.1_22:16365437-16366175:+|nuORF	ENST00000547616.2_1_14:19475147-19475555:-|nuORF	ENST00000547616.2_1_14:19475147-19475555:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	635.302490234375	2	634.795437	1267.57632	1.6828	0.0010683	2.6602	0.0016887	4.3431	0.002757	634.7970263663158	119.21	0.55653	119.21	118.91	119.47	0					22	11	3	0	0	0	0.52842	1	13678	13678		51.193	6.1705	2	435490			11934	11900	9777	9788	13078	13078	131	329			-0.04676378180943175
FMNKRLII	8	Unmodified	_FMNKRLII_					0	0	0		tr|A0A553SK99|A0A553SK99_NIACICellshape-determiningproteinMreCOS=NialliacirculansOX=1397GN=mreCPE=3SV=1	tr|A0A553SK99|A0A553SK99_NIACICellshape-determiningproteinMreCOS=NialliacirculansOX=1397GN=mreCPE=3SV=1	tr|A0A553SK99|A0A553SK99_NIACICellshape-determiningproteinMreCOS=NialliacirculansOX=1397GN=mreCPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.3251342773438	2	517.812605	1033.61066	0.88026	0.00045581	-2.17	-0.0011237	-1.2897	-0.00066785	517.8118540050517	104.65	0.25766	103.22	103.12	103.38	-1.4347					7	4	2	0	0	0	0.028476	1	7300	7300		26.796	1.3459	1	24898			11935	33593	9779	9789	13079	13079					0.09519574084447413
FMPLDQWLYF	10	Unmodified	_FMPLDQWLYF_					0	0	0		ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	453.2589416503906	3	453.886253	1358.63693	0.017635	8.0043E-06	2.5368	0.0011514	2.5544	0.0011594	453.88710550148954	79.81	0.68112	77.058	76.844	77.525	-2.7514					25	13	2	0	0	0	0.02706	1	6491	6491		30.318	17.36	1	45048			11936	7978	9780	9790	13080	13080					-0.028042015347409688
FMRNFEIKD	9	Unmodified	_FMRNFEIKD_					0	0	0			REV__SWAP70|p.C94F|1|0.67|ENSG00000133789|chr11:9713506-9713506|G/T|missense_variant	REV__SWAP70|p.C94F|1|0.67|ENSG00000133789|chr11:9713506-9713506|G/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	600.2984008789062	2	600.297516	1198.58048	0.42593	0.00025569	1.9611	0.0011772	2.387	0.0014329	600.2986444844016	66.04	1.7869	63.345	62.872	64.659	-2.6958					108	35	5	0	0	0	0.51865	1	5117	5117		40.778	4.3314	1	817990	+		11937	29481	9781	9791	13081	13081					-0.010868293714338506
FMSSYPPMPK	10	Unmodified	_FMSSYPPMPK_					0	0	0			REV__nc|ENSG00000141837|O00555-5|CACNA1A	REV__nc|ENSG00000141837|O00555-5|CACNA1A	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.7073974609375	2	592.77757	1183.54059	2.1575	0.0012789	-3.0298	-0.001796	-0.87231	-0.00051708	592.7756910291683	120.28	1.6432	120.28	119.88	121.52	0					71	38	3	0	0	0	0.026602	1	13951	13951		40.058	0	1	1435100	+		11938	28898	9782	9792	13082	13082					-0.04384092366353798
FMVDKAIYL	9	Unmodified	_FMVDKAIYL_					0	0	0		ENST00000482207.1_1_13:43933927-43935475:-|nuORF;ENSG00000120658|ENST00000690772|ENOX1	ENST00000482207.1_1_13:43933927-43935475:-|nuORF	ENST00000482207.1_1_13:43933927-43935475:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	550.29736328125	2	550.296453	1098.57835	0.012294	6.7651E-06	2.5583	0.0014078	2.5706	0.0014146	550.2977145516436	114.4	1.1495	114.4	114.2	115.35	0					54	24	4	0	0	0	0.16264	1	13053	13053		82.75	14.266	1	1281500			11939	3439	9783	9793	13083	13083					0.033007418907800457
FMVDKAIYL	9	Unmodified	_FMVDKAIYL_					0	0	0		ENST00000482207.1_1_13:43933927-43935475:-|nuORF;ENSG00000120658|ENST00000690772|ENOX1	ENST00000482207.1_1_13:43933927-43935475:-|nuORF	ENST00000482207.1_1_13:43933927-43935475:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	550.296453	1098.57835	0.47982	0.00026404	-2.7311	-0.0015029	-2.2512	-0.0012389	550.2938545907829	114.33	0.64082	114.21	113.86	114.5	-0.11777	-0.095589	-0.0055886	NaN	82.75	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15441			11940	3439	9783	9793							0.033007418907800457
FMVLIATSVET	11	Unmodified	_FMVLIATSVET_					0	0	0		ENST00000457750.1_1_3:195341833-195346985:+|nuORF;nc|ENSG00000176945|Q8N307-3|MUC20;ENSG00000176945|ENST00000447234|MUC20	ENST00000457750.1_1_3:195341833-195346985:+|nuORF	ENST00000457750.1_1_3:195341833-195346985:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	404.2190246582031	3	404.21778	1209.63151	3.2514	0.0013143	-0.098768	-3.9924E-05	3.1526	0.0012744	404.2178648039015	90.477	4.4615	90.477	90.186	94.648	0					287	107	5	0	0	0	0.67712	1	9931	9931		37.508	6.9393	1	88373000			11941	7642	9784	9794	13084	13084					0.035080748827795105
FMVWLLIHQLW	11	Unmodified	_FMVWLLIHQLW_					0	0	0		L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|65|3|sense	L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|65|3|sense	L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|65|3|sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	495.9588317871094	3	495.940693	1484.80025	-6.9447	-0.0034441	1.6437	0.00081516	-5.301	-0.002629	495.9414704713579	160.95	0.96712	159.62	159.11	160.08	-1.3316					23	18	2	0	0	0	0.026478	1	13981	13981		10.587	4.2659	1	12747			11942	14586	9785	9795	13085	13085					0.07724021306967188
FMWYHKGRWTE	11	Unmodified	_FMWYHKGRWTE_					0	0	0			REV__ENST00000491938.5_1_7:151269720-151329218:-|nuORF	REV__ENST00000491938.5_1_7:151269720-151329218:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.7642822265625	3	514.243323	1539.70814	-1.0147	-0.0005218	4.2767	0.0021993	3.262	0.0016775	514.2453583574387	34.185	0.33459	34.185	34.017	34.351	0					11	6	2	0	0	0	0.026364	1	1639	1639		13.508	0.55046	1	63420	+		11943	26685	9786	9796	13086	13086					-0.040126887773794806
FMYDRPLRL	9	Oxidation (M)	_FM(Oxidation (M))YDRPLRL_		FM(1)YDRPLRL		FM(62)YDRPLRL	0	0	1		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	613.8228759765625	2	613.821158	1225.62776	1.9793	0.001215	0.22323	0.00013702	2.2026	0.001352	613.8211310976798	83.462	8.351	83.462	82.264	90.615	0					423	201	4	0	0	0	0.3076	2	8735	8620;8735		62.107	21.675	1	13312000			11944	6293	9787	9797	13087;13088	13088		198			0.023974498995585236
FMYDRPLRL	9	Unmodified	_FMYDRPLRL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	605.82568359375	2	605.823701	1209.63285	2.1486	0.0013017	-0.78706	-0.00047682	1.3615	0.00082485	605.8234734534535	90.483	3.1186	90.483	90.186	93.305	0					243	75	4	0	0	0	0.1243	7	9802	9683;9712;9742;9772;9802;9834;9928		74.255	14.338	1	193210000			11945	6293	9787	9798	13089;13090;13091;13092;13093;13094;13095	13093					0.03641753762190092
FMYDRPLRL	9	Unmodified	_FMYDRPLRL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	404.2194519042969	3	404.218226	1209.63285	3.2514	0.0013143	-1.2016	-0.00048573	2.0498	0.00082855	404.2178648039015	90.477	4.4615	90.477	90.186	94.648	0					287	107	5	0	0	0	0.60342	1	9713	9713		31.53	3.6476	1	88373000			11946	6293	9787	9798	13096	13096					0.03641753762190092
FNARRKLK	8	Unmodified	_FNARRKLK_					0	0	0		MTHFD1-CASK|1|fusion;MTHFD1-CASK|3|fusion;MTHFD1-CASK|2|fusion;ENSG00000147044|ENST00000378163|CASK;nc|ENSG00000147044|O14936-2|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-3|CASK;CASK|p.A814Kfs*50|1|0.31|ENSG00000147044|chrX:41531075-41531088|TCCCATACATCGCA/-|frameshift_variant;nc|ENSG00000148660|Q13555-9|CAMK2G;nc|ENSG00000148660|Q13555-5|CAMK2G;nc|ENSG00000148660|Q13555-4|CAMK2G;nc|ENSG00000148660|Q13555-7|CAMK2G;nc|ENSG00000148660|Q13555-11|CAMK2G;nc|ENSG00000058404|Q13554-2|CAMK2B;nc|ENSG00000148660|Q13555-2|CAMK2G;nc|ENSG00000148660|Q13555-8|CAMK2G;nc|ENSG00000148660|Q13555|CAMK2G;ENSG00000148660|ENST00000423381|CAMK2G;nc|ENSG00000148660|Q13555-3|CAMK2G;ENSG00000058404|ENST00000395749|CAMK2B;nc|ENSG00000148660|Q13555-6|CAMK2G;CAMK2B|p.I304V|1|0.26|ENSG00000058404|chr7:44240743-44240743|T/C|missense_variant;nc|ENSG00000145349|Q13557-12|CAMK2D;nc|ENSG00000145349|Q13557-8|CAMK2D;ENST00000492020.5_1_10:75597207-75607060:-|nuORF;ENST00000472912.5_1_10:75578585-75620616:-|nuORF;ENST00000508662.5_1_5:149618053-149669203:-|nuORF;nc|ENSG00000058404|Q13554-7|CAMK2B;nc|ENSG00000058404|Q13554-5|CAMK2B;nc|ENSG00000070808|Q9UQM7|CAMK2A;nc|ENSG00000058404|Q13554-4|CAMK2B;ENSG00000070808|ENST00000671881|CAMK2A;nc|ENSG00000145349|Q13557-9|CAMK2D;nc|ENSG00000058404|Q13554-6|CAMK2B;nc|ENSG00000145349|Q13557-10|CAMK2D;nc|ENSG00000148660|Q13555-10|CAMK2G;nc|ENSG00000145349|Q13557-5|CAMK2D;nc|ENSG00000058404|Q13554-3|CAMK2B;nc|ENSG00000058404|Q13554-8|CAMK2B;ENST00000497584.5_1_7:44259663-44373862:-|nuORF;nc|ENSG00000145349|Q13557|CAMK2D;nc|ENSG00000145349|Q13557-3|CAMK2D;nc|ENSG00000145349|Q13557-6|CAMK2D;nc|ENSG00000145349|Q13557-4|CAMK2D;nc|ENSG00000145349|Q13557-11|CAMK2D;ENSG00000145349|ENST00000511664|CAMK2D;ENSG00000152495|ENST00000282356|CAMK4;ENST00000523845.5_1_7:44260423-44302632:-|nuORF	MTHFD1-CASK|1|fusion;nc|ENSG00000145349|Q13557|CAMK2D;ENSG00000152495|ENST00000282356|CAMK4;ENST00000523845.5_1_7:44260423-44302632:-|nuORF	MTHFD1-CASK|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.3036499023438	2	516.824892	1031.63523	-0.3787	-0.00019572	-2.0995	-0.0010851	-2.4782	-0.0012808	516.8236811676392	62.211	0.68904	58.753	58.57	59.259	-3.4577					25	13	2	0	0	0	0.028476	1	4364	4364		38.806	0	1	104800			11947	14842;5628;5217;13157	9788	9799	13097	13097					0.12067970282146234
FNCRIHFGSP	10	Unmodified	_FNCRIHFGSP_					0	0	0			REV__nc|ENSG00000101187|Q96BD0-3|SLCO4A1	REV__nc|ENSG00000101187|Q96BD0-3|SLCO4A1	MULTI-SECPEP	OvCa9_classI_Rep2	2	590.2667846679688	2	589.2822	1176.54985	-5.3012	-0.0031239	3.521	0.0020749	-1.7802	-0.001049	589.2842288990473	159.28	2.3618	159.05	158.63	160.99	-0.22697					94	47	3	0	0	0	0.026734	1	16192	16192		56.721	12.344	1	69966	+		11948	28771	9789	9800	13098	13098					-0.03136562965801204
FNDCLEHVES	10	Unmodified	_FNDCLEHVES_					0	0	0			REV__chr2:66441765-66442902|94|16.48|0.0|12.04|+|0|None,MEIS1|2	REV__chr2:66441765-66442902|94|16.48|0.0|12.04|+|0|None,MEIS1|2	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.7724609375	2	596.750595	1191.48664	1.5418	0.00092007	-2.8528	-0.0017024	-1.311	-0.00078231	596.7490873855166	124.86	0.32502	124.86	124.65	124.98	0					9	6	2	0	0	0	0.026752	1	14425	14425		53.351	16.192	1	70538	+		11949	16005	9790	9801	13099	13099					-0.10144593264362811
FNDILWML	8	Unmodified	_FNDILWML_					0	0	0			REV__ENST00000582842.1_1_17:37561883-37562066:+|nuORF	REV__ENST00000582842.1_1_17:37561883-37562066:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	526.269775390625	2	526.267696	1050.52084	2.1042	0.0011074	1.0007	0.00052663	3.1049	0.001634	526.2678240681074	106.43	0.83376	106.43	106.1	106.93	0					61	18	5	0	0	0	0.64026	1	11969	11969		55.504	5.4797	1	5016200	+		11950	27832	9791	9802	13100	13100					-0.0024010031479519967
FNDILWML	8	Unmodified	_FNDILWML_					0	0	0			REV__ENST00000582842.1_1_17:37561883-37562066:+|nuORF	REV__ENST00000582842.1_1_17:37561883-37562066:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	526.267696	1050.52084	2.1042	0.0011074	1.0007	0.00052663	3.1049	0.001634	526.2678240681074	106.43	0.83376	106.43	106.1	106.93	0	0	0	NaN	55.504	61	18	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5016200	+		11951	27832	9791	9802							-0.0024010031479519967
FNDKNNLLI	9	Unmodified	_FNDKNNLLI_					0	0	0			REV__tr|A0A7D6VPV9|A0A7D6VPV9_9CLOTHlyC/CorCfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_00410PE=3SV=1	REV__tr|A0A7D6VPV9|A0A7D6VPV9_9CLOTHlyC/CorCfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_00410PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	545.7982788085938	2	545.798206	1089.58186	0.10875	5.9355E-05	-0.28146	-0.00015362	-0.17271	-9.4267E-05	545.7979475948976	133.37	1.3778	133.14	132.82	134.2	-0.22696					81	27	4	0	0	0	0.030815	1	13174	13174		134.81	10.731	1	613460	+		11952	31282	9792	9803	13101	13101					0.04065127988997119
FNDPNAKEM	9	Oxidation (M)	_FNDPNAKEM(Oxidation (M))_		FNDPNAKEM(1)		FNDPNAKEM(150)	0	0	1		ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MSMS	OvCa99_classI_Rep5	1	541.23486328125	2	541.234581	1080.45461	-0.47053	-0.00025467	0.47027	0.00025453	-0.00025856	-1.3994E-07	541.234725237007	38.554	0.58247	38.554	38.254	38.836	0					30	12	3	0	0	0	0.017173	1	2190	2190		150.36	65.002	1	553210			11953	1227	9793	9804	13102	13102		45			-0.08239960947503278
FNDPNAKEM	9	Unmodified	_FNDPNAKEM_					0	0	0		ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MSMS	OvCa99_classI_Rep5	1	533.2381591796875	2	533.237124	1064.45969	-0.62595	-0.00033378	-0.12584	-6.7103E-05	-0.75179	-0.00040088	533.237169322841	53.586	0.66952	53.586	53.26	53.929	0					56	15	6	0	0	0	0.0070154	2	4276	4254;4276		186.41	83.637	1	26486000			11954	1227	9793	9805	13103;13104	13104					-0.06995657084894447
FNDPNAKEM	9	Unmodified	_FNDPNAKEM_					0	0	0		ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MATCH	OvCa9_classI_Rep2	2		2	533.237124	1064.45969	-1.7971	-0.0009583	2.5827	0.0013772	0.78555	0.00041889	533.2382193552121	56.526	0.3964	53.722	53.523	53.919	-2.804	0.11852	0.0024854	NaN	186.41	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8893.6			11955	1227	9793	9805							-0.06995657084894447
FNEIFRKKAL	10	Unmodified	_FNEIFRKKAL_					0	0	0			REV__tr|A0A7D7A1P8|A0A7D7A1P8_9CLOTUVDNAdamagerepairendonucleaseUvsEOS=ClostridiumintestinaleOX=36845GN=uvsEPE=4SV=1	REV__tr|A0A7D7A1P8|A0A7D7A1P8_9CLOTUVDNAdamagerepairendonucleaseUvsEOS=ClostridiumintestinaleOX=36845GN=uvsEPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3690795898438	2	633.371872	1264.72919	-4.1446	-0.0026251	-0.18183	-0.00011517	-4.3265	-0.0027403	633.3716506579397	149.94	3.0119	148.99	147.85	150.86	-0.9512					218	59	5	0	0	0	0.73378	1	12758	12758		26.693	2.1737	1	281260	+		11956	32505	9794	9806	13105	13105					0.10741644593827004
FNEMFYNI	8	Unmodified	_FNEMFYNI_					0	0	0		tr|A0A7D7A393|A0A7D7A393_9CLOTPhageheadclosureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11790PE=4SV=1	tr|A0A7D7A393|A0A7D7A393_9CLOTPhageheadclosureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11790PE=4SV=1	tr|A0A7D7A393|A0A7D7A393_9CLOTPhageheadclosureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11790PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	538.8258666992188	2	539.239135	1076.46372	0.17583	9.4814E-05	4.427	0.0023872	4.6028	0.002482	539.2428049468197	91.816	0.21016	90.58	90.432	90.642	-1.2355					5	3	2	0	0	0	0.028476	1	8145	8145		60.972	16.855	1	9974.8			11957	36109	9795	9807	13106	13106					-0.0714556759116931
FNEPLIDEI	9	Unmodified	_FNEPLIDEI_					0	0	0			REV__tr|A0A7D6ZWI5|A0A7D6ZWI5_9CLOTtRNAthreonylcarbamoyladenosinebiosynthesisproteinTsaEOS=ClostridiumintestinaleOX=36845GN=tsaEPE=3SV=1	REV__tr|A0A7D6ZWI5|A0A7D6ZWI5_9CLOTtRNAthreonylcarbamoyladenosinebiosynthesisproteinTsaEOS=ClostridiumintestinaleOX=36845GN=tsaEPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	545.2764892578125	2	545.276772	1088.53899	1.2966	0.00070701	-2.488	-0.0013566	-1.1913	-0.00064961	545.2754507406441	147.03	0.78777	147.03	146.62	147.41	0					27	15	2	0	0	0	0.60342	1	17198	17198		31.53	2.3598	1	107030	+		11958	32290	9796	9808	13107	13107					-0.0017368685910241766
FNETEVIVFI	10	Unmodified	_FNETEVIVFI_					0	0	0		nc|ENSG00000172139|Q4G0N8-2|SLC9C1;SLC9C1|p.S1123Yfs*16|1|0.44|ENSG00000172139|chr3:112155046-112155047|-/T|frameshift_variant;ENSG00000172139|ENST00000305815|SLC9C1	nc|ENSG00000172139|Q4G0N8-2|SLC9C1	nc|ENSG00000172139|Q4G0N8-2|SLC9C1	MULTI-MSMS	OvCa99_classI_Rep5	1	404.2197265625	3	404.216657	1209.62814	3.2514	0.0013143	2.6809	0.0010837	5.9324	0.002398	404.2178648039015	90.477	4.4615	90.477	90.186	94.648	0					287	107	5	0	0	0	0.72142	1	9684	9684		28.081	3.8497	1	88373000			11959	7267	9797	9809	13108	13108					0.031711481004322195
FNEVFQILL	9	Unmodified	_FNEVFQILL_					0	0	0		ENSG00000131504|ENST00000389054|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;nc|ENSG00000131504|O60610-2|DIAPH1	ENSG00000131504|ENST00000389054|DIAPH1	ENSG00000131504|ENST00000389054|DIAPH1	MULTI-MSMS	OvCa99_classI_Rep5	1	561.8154296875	2	561.813325	1121.6121	1.2998	0.00073025	0.27037	0.0001519	1.5702	0.00088215	561.8135558795038	152.2	0.42841	152.2	151.97	152.4	0					16	8	3	0	0	0	0.46356	1	17842	17842		45.972	5.9141	1	59565			11960	4073	9798	9810	13109	13109					0.056154866542101445
FNFDKVLSF	9	Unmodified	_FNFDKVLSF_					0	0	0		tr|A0A553SN17|A0A553SN17_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23635PE=4SV=1	tr|A0A553SN17|A0A553SN17_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23635PE=4SV=1	tr|A0A553SN17|A0A553SN17_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23635PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.8177490234375	2	558.78985	1115.56515	0.031551	1.763E-05	-1.9412	-0.0010847	-1.9097	-0.0010671	558.788764730946	92.339	1.1132	89.796	89.415	90.528	-2.5425					36	21	2	0	0	0	0.027462	1	8017	8017		42.396	6.7778	1	98881			11961	33896	9799	9811	13110	13110					0.011986271030536955
FNFLGLLDNP	10	Unmodified	_FNFLGLLDNP_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1;ENST00000477888.1_1_9:94842274-94843223:-|nuORF;nc|ENSG00000090054|O15269-2|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.2997436523438	2	575.300581	1148.58661	-0.80705	-0.0004643	-3.1191	-0.0017944	-3.9261	-0.0022587	575.2987375890002	99.043	0.67466	96.718	96.433	97.108	-2.3253					43	12	4	0	0	0	0.47142	1	8834	8834		58.23	3.4536	1	1446600			11962	1831	9800	9812	13111	13111					0.01826012131778043
FNFTNRPGIT	10	Unmodified	_FNFTNRPGIT_					0	0	0			REV__ENSG00000153201|ENST00000283195|RANBP2	REV__ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8025512695312	2	583.80128	1165.58801	0.97841	0.0005712	1.9394	0.0011322	2.9178	0.0017034	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.70152	1	1388	1388		30.318	5.7985	1	155970	+		11963	20326	9801	9813	13112	13112					0.011836462205110365
FNFVGKLL	8	Unmodified	_FNFVGKLL_					0	0	0		nc|ENSG00000131773|O75525-2|KHDRBS3;ENSG00000131773|ENST00000355849|KHDRBS3;ENSG00000112232|ENST00000281156|KHDRBS2	nc|ENSG00000131773|O75525-2|KHDRBS3	nc|ENSG00000131773|O75525-2|KHDRBS3	MULTI-MSMS	OvCa99_classI_Rep5	1	469.2801818847656	2	469.278921	936.543289	1.8248	0.00085633	0.48059	0.00022553	2.3054	0.0010819	469.27895978879275	116.79	1.2829	116.79	116.42	117.7	0					55	27	3	0	0	0	0.36941	2	13341	13341;13363		94.006	0	1	1833800			11964	2887	9802	9814	13113;13114	13113					0.07247867145144937
FNFVGRIL	8	Unmodified	_FNFVGRIL_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MSMS	OvCa99_classI_Rep5	1	483.2828674316406	2	483.281995	964.549437	1.9036	0.00092	0.069519	3.3597E-05	1.9732	0.0009536	483.2818350770119	117.37	0.70599	117.37	117.13	117.84	0					32	14	3	0	0	0	0.42208	1	13443	13443		85.359	22.053	1	376850			11965	2909	9803	9815	13115	13115					0.06574385376666214
FNGHGGISYL	10	Unmodified	_FNGHGGISYL_					0	0	0			REV__ENSG00000178502|ENST00000319121|KLHL11	REV__ENSG00000178502|ENST00000319121|KLHL11	MULTI-MSMS	OvCa9_classI_Rep2	2	532.7625732421875	2	532.761623	1063.50869	-0.45972	-0.00024492	3.3096	0.0017632	2.8498	0.0015183	532.7632052598339	112.88	3.504	112.76	111.98	115.49	-0.12174					139	70	3	0	0	0	0.5675	1	10681	10681		45.972	1.8554	1	216680	+		11966	22061	9804	9816	13116	13116					-0.020520007336244817
FNGKGITKL	9	Unmodified	_FNGKGITKL_					0	0	0			REV__nc|ENSG00000072518|Q7KZI7-16|MARK2	REV__nc|ENSG00000072518|Q7KZI7-16|MARK2	MSMS	OvCa99_classI_Rep5	1	489.2911682128906	2	489.292559	976.570566	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.978	1	93.978	93.478	94.478	0								0	0	0	0.16939	1	10214	10214		52.937	3.4952	1		+		11967	16917	9805	9817	13117	13117					0.08134350685497793
FNGLYELVR	9	Unmodified	_FNGLYELVR_					0	0	0			REV__tr|A0A553SH44|A0A553SH44_NIACISqualene--hopenecyclaseOS=NialliacirculansOX=1397GN=CEQ21_12070PE=3SV=1	REV__tr|A0A553SH44|A0A553SH44_NIACISqualene--hopenecyclaseOS=NialliacirculansOX=1397GN=CEQ21_12070PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.799560546875	2	555.800749	1109.58694	0.16697	9.2802E-05	-4.3367	-0.0024103	-4.1697	-0.0023175	555.7983468129146	62.61	1.1203	59.152	58.765	59.885	-3.4577					56	22	5	0	0	0	0.42676	1	4354	4354		49.442	1.5259	1	450480	+		11968	29771	9806	9818	13118	13118					0.03653431851603273
FNHTLDSI	8	Unmodified	_FNHTLDSI_					0	0	0			REV__chr19:58312403-58314748|380|11.72|0.0|20.16|+|2|TE_info:HERVK3-int,HERVK3-int_dup296,ERVK,LTR,donor,+,58311249,58312403|None,ZNF8-ERVK3-1|3	REV__chr19:58312403-58314748|380|11.72|0.0|20.16|+|2|TE_info:HERVK3-int,HERVK3-int_dup296,ERVK,LTR,donor,+,58311249,58312403|None,ZNF8-ERVK3-1|3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.7645568847656	2	473.735074	945.455596	0.66972	0.00031727	2.0188	0.00095638	2.6885	0.0012736	473.7362904432988	56.398	1.5203	53.104	52.668	54.188	-3.2944					42	29	3	0	0	0	0.028476	1	3601	3601		55.504	25.001	1	56036	+		11969	15987	9807	9819	13119	13119					-0.01931378516269433
FNIDHASVI	9	Unmodified	_FNIDHASVI_					0	0	0		ENSG00000177575|ENST00000432237|CD163;nc|ENSG00000177575|Q86VB7|CD163;nc|ENSG00000177575|Q86VB7-2|CD163;ENST00000537044.1_1_12:7633616-7656286:-|nuORF;nc|ENSG00000177575|Q86VB7-4|CD163	ENSG00000177575|ENST00000432237|CD163	ENSG00000177575|ENST00000432237|CD163	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.2655029296875	2	508.263999	1014.51345	-0.0040378	-2.0523E-06	-0.06511	-3.3093E-05	-0.069148	-3.5145E-05	508.2637962077052	96.361	1.7623	93.935	93.609	95.371	-2.4256					70	34	4	0	0	0	0.1944	1	8501	8501		77.318	15.21	1	349180			11970	7695	9808	9820	13120	13120					0.006768834091303688
FNIFFQEL	8	Unmodified	_FNIFFQEL_					0	0	0			REV__tr|A0A7D6W1Z5|A0A7D6W1Z5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04565PE=4SV=1	REV__tr|A0A7D6W1Z5|A0A7D6W1Z5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04565PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.2723388671875	2	529.271293	1056.52803	2.0165	0.0010673	-0.44202	-0.00023395	1.5745	0.00083334	529.2709143301529	110.62	2.1589	110.62	109.86	112.02	0					135	47	5	0	0	0	0.50747	1	12527	12527		76.774	10.345	1	8549300	+		11971	31892	9809	9821	13121	13121					0.002029555572789832
FNIFRDKV	8	Unmodified	_FNIFRDKV_					0	0	0			REV__MET|p.R218Sfs*29|1|0.11|ENSG00000105976|chr7:116699737-116699738|-/CCCCCGCTGTGCTTGCACCTGGCATCCTCGT|frameshift_variant	REV__MET|p.R218Sfs*29|1|0.11|ENSG00000105976|chr7:116699737-116699738|-/CCCCCGCTGTGCTTGCACCTGGCATCCTCGT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.8423461914062	2	519.790184	1037.56581	-0.83693	-0.00043503	-1.1717	-0.00060905	-2.0087	-0.0010441	519.7896641620003	102.07	0.34727	101.31	101.16	101.51	-0.764					9	6	2	0	0	0	0.028476	1	9403	9403		53.351	7.3995	1	14904	+		11972	17770	9810	9822	13122	13122					0.04853466542749629
FNILFRGF	8	Unmodified	_FNILFRGF_					0	0	0			REV__KAT6B|p.D875N|1|0.19|ENSG00000156650|chr10:74989106-74989106|G/A|missense_variant	REV__KAT6B|p.D875N|1|0.19|ENSG00000156650|chr10:74989106-74989106|G/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.329345703125	2	507.281995	1012.54944	1.766	0.00089587	2.8421	0.0014417	4.6081	0.0023376	507.2832636566933	137.33	0.80145	135.79	135.52	136.32	-1.5437					27	16	2	0	0	0	0.028476	1	13330	13330		71.378	19.079	1	56398	+		11973	28323	9811	9823	13123	13123					0.043663853766588545
FNILFRGF	8	Unmodified	_FNILFRGF_					0	0	0			REV__KAT6B|p.D875N|1|0.19|ENSG00000156650|chr10:74989106-74989106|G/A|missense_variant	REV__KAT6B|p.D875N|1|0.19|ENSG00000156650|chr10:74989106-74989106|G/A|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	507.281995	1012.54944	-0.65966	-0.00033464	5.5545	0.0028177	4.8949	0.0024831	507.28484906511886	136.25	1.2207	136.03	135.76	136.99	-0.22697	0.10121	0.00091481	NaN	71.378	33	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44141	+		11974	28323	9811	9823							0.043663853766588545
FNILFRGF	8	Unmodified	_FNILFRGF_					0	0	0			REV__KAT6B|p.D875N|1|0.19|ENSG00000156650|chr10:74989106-74989106|G/A|missense_variant	REV__KAT6B|p.D875N|1|0.19|ENSG00000156650|chr10:74989106-74989106|G/A|missense_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	507.281995	1012.54944	-1.6794	-0.0008519	6.0405	0.0030643	4.3612	0.0022123	507.28507120396694	137.04	0.54033	135.96	135.61	136.15	-1.0858	0.034	0.0014079	NaN	71.378	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12288	+		11975	28323	9811	9823							0.043663853766588545
FNINLLALN	9	Unmodified	_FNINLLALN_					0	0	0			REV__ENST00000520248.1_1_8:79672379-79672541:-|nuORF	REV__ENST00000520248.1_1_8:79672379-79672541:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.2271118164062	2	516.297842	1030.58113	0.88499	0.00045692	4.1056	0.0021197	4.9906	0.0025766	516.3011607761621	84.763	0.81776	82.108	81.783	82.601	-2.6555					31	16	3	0	0	0	0.027433	1	7157	7157		42.396	0	1	32144	+		11976	19456	9812	9824	13124	13124					0.06706333339934645
FNINLVKPL	9	Unmodified	_FNINLVKPL_					0	0	0			REV__ENSG00000186190|ENST00000375494|BPIFB3	REV__ENSG00000186190|ENST00000375494|BPIFB3	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.2723388671875	2	529.32386	1056.63317	2.0681	0.0010947	1.7843	0.0009445	3.8524	0.0020392	529.3247836225469	110.47	0.35917	110.47	110.31	110.67	0					9	7	2	0	0	0	0.027441	1	12527	12527		29.15	0	1	121200	+		11977	22565	9813	9825	13125	13125					0.10711496753697247
FNIQHCKKL	9	Unmodified	_FNIQHCKKL_					0	0	0		nc|ENSG00000197249|P01009-3|SERPINA1;nc|ENSG00000197249|P01009-2|SERPINA1;ENSG00000197249|ENST00000393087|SERPINA1	nc|ENSG00000197249|P01009-3|SERPINA1	nc|ENSG00000197249|P01009-3|SERPINA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.8108520507812	2	565.810593	1129.60663	0.33754	0.00019099	-3.8279	-0.0021658	-3.4903	-0.0019749	565.8084676806906	91.808	1.4655	89.265	88.862	90.327	-2.5425					55	28	3	0	0	0	0.38529	1	7966	7966		53.351	5.6941	1	310070			11978	8693	9814	9826	13126	13126					0.047014845907142444
FNIQHCKKL	9	Unmodified	_FNIQHCKKL_					0	0	0		nc|ENSG00000197249|P01009-3|SERPINA1;nc|ENSG00000197249|P01009-2|SERPINA1;ENSG00000197249|ENST00000393087|SERPINA1	nc|ENSG00000197249|P01009-3|SERPINA1	nc|ENSG00000197249|P01009-3|SERPINA1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	565.810593	1129.60663	-1.0427	-0.00058995	-2.4822	-0.0014044	-3.5248	-0.0019944	565.8090263331661	91.196	1.3058	89.172	88.829	90.135	-2.0241	-0.04666	0.00057807	NaN	53.351	40	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	443670			11979	8693	9814	9826							0.047014845907142444
FNIWKKLFV	9	Unmodified	_FNIWKKLFV_					0	0	0		nc|nan|Q3C1V1-2|C11orf91;ENSG00000205177|ENST00000379011|C11orf91	nc|nan|Q3C1V1-2|C11orf91	nc|nan|Q3C1V1-2|C11orf91	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8567504882812	2	597.855327	1193.6961	-0.38237	-0.0002286	2.1135	0.0012636	1.7311	0.001035	597.8564103488146	145.14	4.0194	143.71	141.51	145.53	-1.4357					229	77	4	0	0	0	0.69895	1	14401	14401		18.324	0.062328	1	217250			11980	9056	9815	9827	13127	13127					0.1070006254171858
FNKMMSDSTI	10	Unmodified	_FNKMMSDSTI_					0	0	0			REV__ENSG00000155096|ENST00000337198|AZIN1	REV__ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	OvCa99_classI_Rep5	1	587.2691040039062	2	587.267567	1172.52058	0.79401	0.0004663	1.2049	0.00070761	1.9989	0.0011739	587.2682027762017	139.74	0.80136	139.74	139.37	140.17	0					38	16	3	0	0	0	0.59317	1	16306	16306		42.864	0.38981	1	287030	+		11981	20413	9816	9828	13128	13128					-0.05877888096938477
FNKPTDKV	8	Unmodified	_FNKPTDKV_					0	0	0		tr|A0A7D6ZGZ9|A0A7D6ZGZ9_9CLOTDUF4230domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00770PE=4SV=1	tr|A0A7D6ZGZ9|A0A7D6ZGZ9_9CLOTDUF4230domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00770PE=4SV=1	tr|A0A7D6ZGZ9|A0A7D6ZGZ9_9CLOTDUF4230domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00770PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.6090393066406	2	474.761092	947.507631	-0.23958	-0.00011375	0.32984	0.0001566	0.090256	4.285E-05	474.7610657024825	81.376	2.4368	78.665	77.22	79.657	-2.7106					83	49	3	0	0	0	0.028476	1	6723	6723		31.955	8.9124	1	428590			11982	35556	9817	9829	13129	13129					0.031777848974684275
FNLETETLI	9	Unmodified	_FNLETETLI_					0	0	0		tr|A0A553SH30|A0A553SH30_NIACIDihydrodipicolinatesynthasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_12000PE=3SV=1	tr|A0A553SH30|A0A553SH30_NIACIDihydrodipicolinatesynthasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_12000PE=3SV=1	tr|A0A553SH30|A0A553SH30_NIACIDihydrodipicolinatesynthasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_12000PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	540.2847900390625	2	540.284597	1078.55464	-0.32528	-0.00017574	-0.3772	-0.00020379	-0.70247	-0.00037954	540.284316762095	91.583	1.0289	89.559	89.332	90.361	-2.0241					50	20	3	0	0	0	0.31747	1	5759	5759		60.972	0	1	1170800			11983	33229	9818	9830	13130	13130					0.01850599657973362
FNLKEVLQV	9	Unmodified	_FNLKEVLQV_					0	0	0		ENSG00000197093|ENST00000360039|GAL3ST4	ENSG00000197093|ENST00000360039|GAL3ST4	ENSG00000197093|ENST00000360039|GAL3ST4	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3165893554688	2	545.318774	1088.623	-2.8527	-0.0015556	-0.96726	-0.00052747	-3.8199	-0.0020831	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.60342	1	11993	11993		31.53	2.3598	1	337600			11984	8675	9819	9831	13131	13131					0.08222889028456848
FNLNLFYL	8	Unmodified	_FNLNLFYL_					0	0	0			REV__chr5:124062510-124213455|90|11.21|0.0|12.03|-|0|TE_info:L1PA4,L1PA4_dup4151,L1,LINE,donor,+,124213455,124219314|LINC01170,None|99	REV__chr5:124062510-124213455|90|11.21|0.0|12.03|-|0|TE_info:L1PA4,L1PA4_dup4151,L1,LINE,donor,+,124213455,124219314|LINC01170,None|99	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.8014526367188	2	522.28166	1042.54877	0.59564	0.00031109	1.3002	0.00067908	1.8959	0.00099018	522.2820802205254	139.19	0.43633	139.19	138.98	139.41	0					19	8	3	0	0	0	0.028476	1	16252	16252		44.531	16.277	1	91340	+		11985	16056	9820	9832	13132	13132					0.029195459369248056
FNLPNIVEL	9	Unmodified	_FNLPNIVEL_					0	0	0		ENSG00000127083|ENST00000375550|OMD	ENSG00000127083|ENST00000375550|OMD	ENSG00000127083|ENST00000375550|OMD	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.268798828125	2	529.797675	1057.5808	-0.4149	-0.00021981	0.26885	0.00014243	-0.14605	-7.7377E-05	529.797780491465	111.59	1.4057	110.08	109.79	111.2	-1.5111					32	26	2	0	0	0	0.027353	1	10374	10374		93.195	34.414	1	82863			11986	3817	9821	9833	13133	13133					0.054309136201027286
FNLPNIVEL	9	Unmodified	_FNLPNIVEL_					0	0	0		ENSG00000127083|ENST00000375550|OMD	ENSG00000127083|ENST00000375550|OMD	ENSG00000127083|ENST00000375550|OMD	MULTI-MATCH	OvCa9_classI_Rep2	2		2	529.797675	1057.5808	-0.53239	-0.00028206	1.655	0.00087682	1.1226	0.00059477	529.7976227671066	110.1	0.98853	109.93	109.71	110.7	-0.17237	-0.095467	0.0012738	NaN	93.195	32	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66059			11987	3817	9821	9833							0.054309136201027286
FNLPNIVEL	9	Unmodified	_FNLPNIVEL_					0	0	0		ENSG00000127083|ENST00000375550|OMD	ENSG00000127083|ENST00000375550|OMD	ENSG00000127083|ENST00000375550|OMD	MULTI-MATCH	OvCa9_classI_Rep3	3		2	529.797675	1057.5808	0.9534	0.00050511	-0.032697	-1.7323E-05	0.9207	0.00048779	529.7973088356844	111.17	0.94102	110.06	109.76	110.7	-1.1038	0.039152	-0.00051454	NaN	93.195	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63027			11988	3817	9821	9833							0.054309136201027286
FNLVAFVAIL	10	Unmodified	_FNLVAFVAIL_					0	0	0			REV__tr|A0A553SNZ2|A0A553SNZ2_NIACIFlagellarbiosyntheticproteinFlhBOS=NialliacirculansOX=1397GN=flhBPE=3SV=1	REV__tr|A0A553SNZ2|A0A553SNZ2_NIACIFlagellarbiosyntheticproteinFlhBOS=NialliacirculansOX=1397GN=flhBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8302612304688	2	553.83406	1105.65357	-3.0788	-0.0017052	-4.2569	-0.0023576	-7.3358	-0.0040628	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.81289	1	11671	11671		17.365	0.89182	1	308210	+		11989	30472	9822	9834	13134	13134					0.10496667413508476
FNLVGHPE	8	Unmodified	_FNLVGHPE_					0	0	0			REV__ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	REV__ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	456.7338562011719	2	456.732335	911.450116	2.4926	0.0011384	-0.064908	-2.9645E-05	2.4277	0.0011088	456.7320357753877	95.89	0.55379	95.89	95.699	96.253	0					27	12	4	0	0	0	0.56195	1	10490	10490		71.296	5.4925	1	699280	+		11990	15573	9823	9835	13135	13135					-0.009150573081001312
FNLVGHPE	8	Unmodified	_FNLVGHPE_					0	0	0			REV__ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	REV__ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	456.732335	911.450116	1.2459	0.00056903	-1.2567	-0.00057399	-0.010846	-4.9538E-06	456.731507688332	96.822	0.78522	95.864	95.678	96.464	-0.95857	0.0071839	-0.00075115	NaN	71.296	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18460	+		11991	15573	9823	9835							-0.009150573081001312
FNLVGHPE	8	Unmodified	_FNLVGHPE_					0	0	0			REV__ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	REV__ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	456.732335	911.450116	-0.4875	-0.00022266	0.31043	0.00014178	-0.17707	-8.0873E-05	456.7322686325284	97.614	0.64201	95.855	95.62	96.262	-1.7595	-0.0018305	0.00068039	NaN	71.296	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20025	+		11992	15573	9823	9835							-0.009150573081001312
FNLVGHPE	8	Unmodified	_FNLVGHPE_					0	0	0			REV__ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	REV__ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	456.732335	911.450116	0.41597	0.00018998	-0.676	-0.00030875	-0.26004	-0.00011877	456.7319019839421	98.196	0.7562	95.818	95.418	96.175	-2.3786	-0.03861	-0.00022068	NaN	71.296	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16149	+		11993	15573	9823	9835							-0.009150573081001312
FNLWEIIFP	9	Unmodified	_FNLWEIIFP_					0	0	0		ENST00000413366.7_1_17:64800791-64801205:+|nuORF	ENST00000413366.7_1_17:64800791-64801205:+|nuORF	ENST00000413366.7_1_17:64800791-64801205:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	589.34228515625	2	589.815867	1177.61718	-4.5418	-0.0026788	1.5925	0.00093928	-2.9493	-0.0017396	589.8165628326301	145.9	1.093	144.94	144.8	145.89	-0.95947					27	21	2	0	0	0	0.027462	1	12218	12218		12.959	0.7525	1	10083			11994	11560	9824	9836	13136	13136					0.03547790516790883
FNMRSERA	8	Unmodified	_FNMRSERA_					0	0	0			REV__nc|ENSG00000127980|O43933-2|PEX1;REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	REV__nc|ENSG00000127980|O43933-2|PEX1	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.82659912109375	2	505.74545	1009.47635	-1.2403	-0.00062728	-4.1127	-0.00208	-5.353	-0.0027072	506.2439081526238	77.731	0.89626	75.378	75.151	76.048	-2.3527					29	17	3	0	0	0	0.028476	1	4070	4070		39.253	0	1	19861	+		11995	18835;26553	9825	9837	13137	13137					-0.028011114082687527
FNNGSLPPQVK	11	Unmodified	_FNNGSLPPQVK_					0	0	0			REV__ENST00000550939.5_1_19:12780789-12781380:+|nuORF	REV__ENST00000550939.5_1_19:12780789-12781380:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.1985168457031	3	400.8839	1199.62987	1.0403	0.00041703	-0.13256	-5.3142E-05	0.90772	0.00036389	400.8837337593392	55.862	0.74041	55.862	55.52	56.261	0					35	17	3	0	0	0	0.025528	1	4648	4648		14.779	0	1	632180	+		11996	27480	9826	9838	13138	13138					0.038042019090198664
FNNVIIPI	8	Unmodified	_FNNVIIPI_					0	0	0			REV__ENSG00000182674|ENST00000523207|KCNB2	REV__ENSG00000182674|ENST00000523207|KCNB2	MULTI-SECPEP	OvCa9_classI_Rep3	3	465.26483154296875	2	465.276378	928.538203	-0.59245	-0.00027565	-0.51943	-0.00024168	-1.1119	-0.00051733	465.27620560945934	94.95	0.29672	93.054	92.864	93.161	-1.8956					10	5	3	0	0	0	0.028476	1	6173	6173		21.702	4.3374	1	28792	+		11997	22311	9827	9839	13139	13139					0.07107563282522733
FNPEVGYPELI	11	Unmodified	_FNPEVGYPELI_					0	0	0			REV__tr|A0A553SKB6|A0A553SKB6_NIACISporecoatproteinYsxEOS=NialliacirculansOX=1397GN=ysxEPE=4SV=1	REV__tr|A0A553SKB6|A0A553SKB6_NIACISporecoatproteinYsxEOS=NialliacirculansOX=1397GN=ysxEPE=4SV=1	MSMS	OvCa99_classI_Rep5	1	639.32666015625	2	639.324254	1276.63395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.69	1	122.69	122.19	123.19	0								0	0	0	0.19317	1	14135	14135		40.058	2.2467	1		+		11998	30105	9828	9840	13140	13140					0.006702466121168982
FNPFILSKL	9	Unmodified	_FNPFILSKL_					0	0	0			REV__ENSG00000152767|ENST00000319562|FARP1	REV__ENSG00000152767|ENST00000319562|FARP1	MULTI-MSMS	OvCa99_classI_Rep5	1	539.8189697265625	2	539.81841	1077.62227	2.1851	0.0011796	-3.7052	-0.0020001	-1.5201	-0.00082059	539.816406915026	120.52	0.61673	120.52	120.3	120.92	0					30	14	3	0	0	0	0.35444	2	13846	13840;13846		56.721	7.198	1	501080	+		11999	20303	9829	9841	13141;13142	13142					0.0865609437942112
FNPFILSKL	9	Unmodified	_FNPFILSKL_					0	0	0			REV__ENSG00000152767|ENST00000319562|FARP1	REV__ENSG00000152767|ENST00000319562|FARP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.3168334960938	2	539.81841	1077.62227	2.1851	0.0011796	-3.7052	-0.0020001	-1.5201	-0.00082059	539.816406915026	120.52	0.61673	120.52	120.3	120.92	0					30	14	3	0	0	0	0.027432	1	13840	13840		49.536	10.283	1	501080	+		12000	20303	9829	9841	13143	13143					0.0865609437942112
FNPLALLL	8	Unmodified	_FNPLALLL_					0	0	0		nc|ENSG00000143514|Q13625-2|TP53BP2;nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2;ENST00000554432.1_1_14:104205014-104205387:-|nuORF;ENST00000556334.5_1_14:104201493-104205387:-|nuORF;ENST00000555391.5_1_14:104201493-104210315:-|nuORF;ENSG00000088808|ENST00000202556|PPP1R13B	nc|ENSG00000143514|Q13625-2|TP53BP2	nc|ENSG00000143514|Q13625-2|TP53BP2	MULTI-MSMS	OvCa9_classI_Rep2	2	450.78533935546875	2	450.781296	899.54804	4.7325	0.0021333	3.2092	0.0014466	7.9417	0.00358	450.78259742847797	27.516	0.58479	24.806	24.66	25.245	-2.7097					22	13	2	0	0	0	0.75991	1	488	488		21.702	1.2205	1	50831			12001	5066	9830	9842	13144	13144					0.09424751287906474
FNPNKKYNHI	10	Unmodified	_FNPNKKYNHI_					0	0	0			REV__OTOF|p.Y1215Mfs*57|1|0.35|ENSG00000115155|chr2:26473222-26473223|-/CTCAT|frameshift_variant;REV__nc|ENSG00000115155|Q9HC10-4|OTOF	REV__OTOF|p.Y1215Mfs*57|1|0.35|ENSG00000115155|chr2:26473222-26473223|-/CTCAT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	637.8338623046875	2	637.835654	1273.65676	-2.3478	-0.0014975	1.3241	0.00084459	-1.0236	-0.0006529	637.8363950156421	141.82	0.54611	140.81	140.59	141.13	-1.0106					28	10	3	0	0	0	0.65434	1	11751	11751		35.618	7.736	1	123960	+		12002	18221;28809	9831	9843	13145	13145					0.030873105202317674
FNQIGIGIALN	11	Unmodified	_FNQIGIGIALN_					0	0	0			REV__ENST00000579988.1_1_17:70643725-70721657:-|nuORF	REV__ENST00000579988.1_1_17:70643725-70721657:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.9786376953125	2	580.327131	1158.63971	-1.9206	-0.0011146	-0.75661	-0.00043908	-2.6772	-0.0015537	580.3266031321257	103.74	0.59287	103.74	103.47	104.06	0					30	13	4	0	0	0	0.025597	1	11634	11634		35.152	0	1	1126000	+		12003	19135	9832	9844	13146	13146					0.0667338991440829
FNQINKSHSC	10	Unmodified	_FNQINKSHSC_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MSMS	OvCa99_classI_Rep5	1	589.2754516601562	2	589.274572	1176.53459	NaN	NaN	NaN	NaN	NaN	NaN	NaN	153.78	1	153.78	153.28	154.28	0								0	0	0	0.11716	1	18016	18016		62.107	1.1355	1		+		12004	20262	9833	9845	13147	13147					-0.04661474553631706
FNRRVKGH	8	Unmodified	_FNRRVKGH_					0	0	0			REV__ENST00000589825.5_1_17:42960950-42971889:-|nuORF	REV__ENST00000589825.5_1_17:42960950-42971889:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.7765197753906	2	507.291217	1012.56788	-0.031351	-1.5904E-05	-1.0993	-0.00055766	-1.1306	-0.00057357	507.28991891900694	58.508	0.50156	58.508	58.194	58.696	0					22	11	3	0	0	0	0.028476	1	4933	4933		19.36	0	1	338280	+		12005	27911	9834	9846	13148	13148					0.062099400712327224
FNTLRSHL	8	Unmodified	_FNTLRSHL_					0	0	0		ENST00000379070.3_1_20:5157275-5170877:+|nuORF;ENSG00000101290|ENST00000460006|CDS2	ENST00000379070.3_1_20:5157275-5170877:+|nuORF	ENST00000379070.3_1_20:5157275-5170877:+|nuORF	MSMS	OvCa99_classI_Rep5	1	494.2735595703125	2	494.272158	986.529764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.586	1	72.586	72.086	73.086	0								0	0	0	0.30129	1	7076	7076		45.952	5.3793	1				12006	2160	9835	9847	13149	13149					0.03596009365901409
FNTNTISGVI	10	Unmodified	_FNTNTISGVI_					0	0	0			REV__ENSG00000137392|ENST00000259938|CLPS	REV__ENSG00000137392|ENST00000259938|CLPS	MULTI-MSMS	OvCa9_classI_Rep2	2	533.2828979492188	2	533.282389	1064.55022	-0.52256	-0.00027867	0.73307	0.00039093	0.21052	0.00011226	533.2827790897065	92.451	1.6044	91.283	90.919	92.523	-1.168					102	30	6	0	0	0	0.48398	1	8213	8213		56.434	5.0983	1	624070	+		12007	19448	9836	9848	13150	13150					0.020531352350417365
FNVAQIEDL	9	Unmodified	_FNVAQIEDL_					0	0	0			REV__ENST00000312814.10_1_7:112424837-112430298:-|nuORF	REV__ENST00000312814.10_1_7:112424837-112430298:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.7684936523438	2	524.769114	1047.52368	1.7914	0.00094008	-2.1092	-0.0011068	-0.31775	-0.00016674	524.7681164746734	136.65	0.77441	135.11	134.89	135.67	-1.5437					20	15	2	0	0	0	0.38529	1	13266	13266		53.351	0.41475	1	51474	+		12008	24360	9837	9849	13151	13151					0.0018144634370855783
FNVAQIEDL	9	Unmodified	_FNVAQIEDL_					0	0	0			REV__ENST00000312814.10_1_7:112424837-112430298:-|nuORF	REV__ENST00000312814.10_1_7:112424837-112430298:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	524.769114	1047.52368	-0.16329	-8.5692E-05	-0.36494	-0.00019151	-0.52824	-0.0002772	524.768916267377	135.55	0.73727	135.32	135.18	135.91	-0.22697	0.10925	0.0005237	NaN	53.351	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32839	+		12009	24360	9837	9849							0.0018144634370855783
FNVAQIEDL	9	Unmodified	_FNVAQIEDL_					0	0	0			REV__ENST00000312814.10_1_7:112424837-112430298:-|nuORF	REV__ENST00000312814.10_1_7:112424837-112430298:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	524.769114	1047.52368	-1.4565	-0.00076435	0.78787	0.00041345	-0.66867	-0.0003509	524.7694909850527	136.32	0.49307	135.21	134.95	135.44	-1.1076	-0.0032881	0.0017336	NaN	53.351	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28194	+		12010	24360	9837	9849							0.0018144634370855783
FNVAQIEDL	9	Unmodified	_FNVAQIEDL_					0	0	0			REV__ENST00000312814.10_1_7:112424837-112430298:-|nuORF	REV__ENST00000312814.10_1_7:112424837-112430298:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	524.769114	1047.52368	1.7914	0.00094008	-2.1092	-0.0011068	-0.31775	-0.00016674	524.7681164746734	136.65	0.77441	135.11	134.89	135.67	-1.5437	-0.10596	-0.0013069	NaN	53.351	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51474	+		12011	24360	9837	9849							0.0018144634370855783
FNVFFTLLVIL	11	Unmodified	_FNVFFTLLVIL_					0	0	0		ENSG00000198283|ENST00000360374|OR5B21	ENSG00000198283|ENST00000360374|OR5B21	ENSG00000198283|ENST00000360374|OR5B21	MULTI-MSMS	OvCa9_classI_Rep2	2	442.6018371582031	3	442.600442	1324.7795	0.47843	0.00021175	2.7187	0.0012033	3.1971	0.0014151	442.60159734649346	49.766	2.5262	47.006	46.523	49.049	-2.7603					125	50	5	0	0	0	0.69099	1	3222	3222		32.751	2.1817	1	549840			12012	8803	9838	9850	13152	13152					0.1300975419894712
FNVLLERK	8	Unmodified	_FNVLLERK_					0	0	0			REV__tr|A0A553SH10|A0A553SH10_NIACIVanZfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_11890PE=4SV=1	REV__tr|A0A553SH10|A0A553SH10_NIACIVanZfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_11890PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	509.8031311035156	2	509.805834	1017.59712	-1.3099	-0.00066782	-2.9211	-0.0014892	-4.231	-0.002157	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.75426	1	10980	10980		18.324	1.6194	1	99460	+		12013	29762	9839	9851	13153	13153					0.08902039576844345
FNVRKNLSD	9	Unmodified	_FNVRKNLSD_					0	0	0			REV__tr|A0A7D6ZXY5|A0A7D6ZXY5_9CLOTRibosomalRNAsmallsubunitmethyltransferaseGOS=ClostridiumintestinaleOX=36845GN=rsmGPE=3SV=1	REV__tr|A0A7D6ZXY5|A0A7D6ZXY5_9CLOTRibosomalRNAsmallsubunitmethyltransferaseGOS=ClostridiumintestinaleOX=36845GN=rsmGPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.8148193359375	2	546.793455	1091.57236	1.8636	0.001019	0.87219	0.00047691	2.7357	0.0014959	546.7938050129727	85.294	0.74312	85.294	84.841	85.585	0					16	10	2	0	0	0	0.027461	1	8917	8917		58.782	23.164	1	942130	+		12014	32350	9840	9852	13154	13154					0.03023359703456663
FNVWSLID	8	Unmodified	_FNVWSLID_					0	0	0			REV__MDN1|p.I5359Kfs*8|1|0.1|ENSG00000112159|chr6:89650154-89650155|-/CATAGCT|frameshift_variant	REV__MDN1|p.I5359Kfs*8|1|0.1|ENSG00000112159|chr6:89650154-89650155|-/CATAGCT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.8041076660156	2	497.255643	992.496732	0.0011458	5.6977E-07	-3.2485	-0.0016153	-3.2474	-0.0016148	497.25387647914164	64.875	0.47983	64.875	64.631	65.111	0					16	11	2	0	0	0	0.028476	1	5915	5915		79.451	29.426	1	381720	+		12015	18079	9841	9853	13155	13155					0.00018382523194304667
FNYFFYNKR	9	Unmodified	_FNYFFYNKR_					0	0	0		ENSG00000179632|ENST00000322428|MAF1	ENSG00000179632|ENST00000322428|MAF1	ENSG00000179632|ENST00000322428|MAF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	432.9032287597656	3	433.548741	1297.62439	-0.24697	-0.00010707	-1.4413	-0.00062487	-1.6883	-0.00073194	433.54811527208363	37.717	2.1758	37.717	36.751	38.927	0					64	47	2	0	0	0	0.027462	1	2084	2084		23.523	8.1896	1	49227			12016	7837	9842	9854	13156	13156					-0.012514768827941225
FNYIRTVT	8	Unmodified	_FNYIRTVT_					0	0	0		ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	MULTI-MSMS	OvCa9_classI_Rep3	3	507.2742919921875	2	507.274367	1012.53418	-0.32482	-0.00016478	0.42812	0.00021717	0.10329	5.2398E-05	507.2744775445949	108.1	1.1293	106.91	106.64	107.77	-1.1978					63	21	4	0	0	0	0.57734	1	7705	7705		68.787	0	1	500160			12017	8412	9843	9855	13157	13157					0.02841473788816984
FNYLAKHDV	9	Unmodified	_FNYLAKHDV_					0	0	0		nc|ENSG00000137757|P51878-4|CASP5;nc|ENSG00000137757|P51878-6|CASP5;nc|ENSG00000137757|P51878-2|CASP5;ENSG00000137757|ENST00000260315|CASP5;nc|ENSG00000137757|P51878-5|CASP5	nc|ENSG00000137757|P51878-4|CASP5	nc|ENSG00000137757|P51878-4|CASP5	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.7667236328125	2	553.785099	1105.55564	0.67272	0.00037254	3.4575	0.0019147	4.1302	0.0022873	553.7866190809136	105.65	0.4343	105.65	105.4	105.83	0					13	9	2	0	0	0	0.027462	1	11843	11843		44.117	23.635	1	313450			12018	4612	9844	9856	13158	13158					0.007088588175065524
FNYTTKKTKIL	11	Unmodified	_FNYTTKKTKIL_					0	0	0		ENST00000311117.7_1_7:104746436-104747131:+|nuORF	ENST00000311117.7_1_7:104746436-104747131:+|nuORF	ENST00000311117.7_1_7:104746436-104747131:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	452.9329833984375	3	452.934372	1355.78129	1.2617	0.00057148	-3.351	-0.0015178	-2.0893	-0.0009463	452.932778614781	65.409	1.321	62.463	62.198	63.519	-2.9459					63	25	4	0	0	0	0.70315	1	2619	2619		28.577	7.7396	1	128460			12019	10293	9845	9857	13159	13159					0.11762763216870553
FNYTTKKTKIL	11	Unmodified	_FNYTTKKTKIL_					0	0	0		ENST00000311117.7_1_7:104746436-104747131:+|nuORF	ENST00000311117.7_1_7:104746436-104747131:+|nuORF	ENST00000311117.7_1_7:104746436-104747131:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	452.934372	1355.78129	2.4381	0.0011043	-4.3176	-0.0019556	-1.8795	-0.00085128	452.93233005547296	65.008	0.92838	62.284	61.864	62.792	-2.7245	-0.16158	-0.0014468	NaN	28.577	49	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97654			12020	10293	9845	9857							0.11762763216870553
FNYTTKKTKIL	11	Unmodified	_FNYTTKKTKIL_					0	0	0		ENST00000311117.7_1_7:104746436-104747131:+|nuORF	ENST00000311117.7_1_7:104746436-104747131:+|nuORF	ENST00000311117.7_1_7:104746436-104747131:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	452.934372	1355.78129	-0.40704	-0.00018436	-1.6576	-0.00075081	-2.0647	-0.00093517	452.93368301831725	66.075	0.63068	62.59	62.276	62.907	-3.4854	0.14441	0.0021676	NaN	28.577	38	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108520			12021	10293	9845	9857							0.11762763216870553
FPAIKDGIAQL	11	Unmodified	_FPAIKDGIAQL_					0	0	0		nc|ENSG00000284922|Q8WZ04-2|TOMT;nc|ENSG00000284922|Q8WZ04|TOMT	nc|ENSG00000284922|Q8WZ04-2|TOMT	nc|ENSG00000284922|Q8WZ04-2|TOMT	MULTI-MSMS	OvCa9_classI_Rep3	3	586.8342895507812	2	586.837331	1171.66011	-2.7152	-0.0015934	-2.3665	-0.0013887	-5.0817	-0.0029821	586.8358131887276	92.271	1.2753	90.247	89.941	91.216	-2.0241					66	26	3	0	0	0	0.22834	1	5839	5839		76.17	4.2922	1	968670			12022	15382	9846	9858	13160	13160					0.08114560574222196
FPALGMGVLTL	11	Unmodified	_FPALGMGVLTL_					0	0	0			REV__nc|ENSG00000100342|O14791-3|APOL1	REV__nc|ENSG00000100342|O14791-3|APOL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.2964477539062	2	559.817553	1117.62055	0.32479	0.00018182	3.9204	0.0021947	4.2451	0.0023765	559.8197473323035	101.78	0.38659	101.78	101.57	101.95	0					12	8	2	0	0	0	0.025496	1	11333	11333		32.812	12.816	1	169210	+		12023	17402	9847	9859	13161	13161					0.06644717299172953
FPALLWPAL	9	Unmodified	_FPALLWPAL_					0	0	0		ENST00000450142.6_2_12:80328735-80328918:-|nuORF	ENST00000450142.6_2_12:80328735-80328918:-|nuORF	ENST00000450142.6_2_12:80328735-80328918:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	514.3076782226562	2	514.302396	1026.59024	0.82662	0.00042513	0.1493	7.6783E-05	0.97592	0.00050192	514.3022728692242	124.27	1.0123	124.27	123.97	124.98	0					49	21	3	0	0	0	0.42921	1	14343	14343		49.211	1.5535	1	332880			12024	12036	9848	9860	13162	13162					0.07800726696245874
FPALQFASY	9	Unmodified	_FPALQFASY_					0	0	0			REV__ENSG00000148429|ENST00000609104|USP6NL	REV__ENSG00000148429|ENST00000609104|USP6NL	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.262451171875	2	522.263468	1042.51238	-1.1141	-0.00058187	-2.7692	-0.0014463	-3.8833	-0.0020281	522.2617784772156	99.377	2.0571	97.052	96.536	98.593	-2.3253					99	39	4	0	0	0	0.31747	1	8859	8859		60.972	3.1607	1	271130	+		12025	20110	9849	9861	13163	13163					-0.0071733095976469485
FPALQFASY	9	Unmodified	_FPALQFASY_					0	0	0			REV__ENSG00000148429|ENST00000609104|USP6NL	REV__ENSG00000148429|ENST00000609104|USP6NL	MULTI-MATCH	OvCa9_classI_Rep2	2		2	522.263468	1042.51238	0.057548	3.0055E-05	-4.0827	-0.0021322	-4.0251	-0.0021022	522.2611323224688	97.979	1.8773	97.086	96.727	98.604	-0.89305	-0.0013931	-0.00064432	NaN	60.972	96	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203280	+		12026	20110	9849	9861							-0.0071733095976469485
FPALQFASY	9	Unmodified	_FPALQFASY_					0	0	0			REV__ENSG00000148429|ENST00000609104|USP6NL	REV__ENSG00000148429|ENST00000609104|USP6NL	MULTI-MATCH	OvCa9_classI_Rep3	3		2	522.263468	1042.51238	-0.28519	-0.00014895	-3.5283	-0.0018427	-3.8135	-0.0019917	522.2614262035961	98.809	1.9092	97.124	96.388	98.297	-1.685	0.036816	-6.5251E-05	NaN	60.972	88	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	292710	+		12027	20110	9849	9861							-0.0071733095976469485
FPALVLGALS	10	Unmodified	_FPALVLGALS_					0	0	0			REV__nc|ENSG00000128284|O95236-3|APOL3	REV__nc|ENSG00000128284|O95236-3|APOL3	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.2952880859375	2	494.29731	986.580068	-0.39004	-0.0001928	-1.1496	-0.00056827	-1.5397	-0.00076106	494.2966790924709	117.4	1.4681	116.04	115.19	116.66	-1.3645					50	27	3	0	0	0	0.56767	1	10986	10986		45.952	3.5558	1	79589	+		12028	18850	9850	9862	13164	13164					0.08624118971033568
FPALVLGALS	10	Unmodified	_FPALVLGALS_					0	0	0			REV__nc|ENSG00000128284|O95236-3|APOL3	REV__nc|ENSG00000128284|O95236-3|APOL3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	494.29731	986.580068	-0.44107	-0.00021802	-0.2263	-0.00011186	-0.66737	-0.00032988	494.2971549540435	116.15	0.84227	116.04	115.59	116.43	-0.11777	-0.0062324	0.0002277	NaN	45.952	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44964	+		12029	18850	9850	9862							0.08624118971033568
FPALVLGALS	10	Unmodified	_FPALVLGALS_					0	0	0			REV__nc|ENSG00000128284|O95236-3|APOL3	REV__nc|ENSG00000128284|O95236-3|APOL3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	494.29731	986.580068	-1.028	-0.00050814	-0.081911	-4.0488E-05	-1.1099	-0.00054863	494.2971944582037	117.08	1.3372	116.05	115.65	116.98	-1.0324	0.0099529	0.00037044	NaN	45.952	50	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62912	+		12030	18850	9850	9862							0.08624118971033568
FPALVPFPL	9	Unmodified	_FPALVPFPL_					0	0	0			REV__nc|ENSG00000155506|Q6PKG0-3|LARP1	REV__nc|ENSG00000155506|Q6PKG0-3|LARP1	MULTI-MSMS	OvCa9_classI_Rep2	2	500.794921875	2	500.796946	999.57934	-0.33551	-0.00016802	-4.125	-0.0020658	-4.4605	-0.0022338	500.7948099501536	108.45	4.1006	108.22	107.63	111.73	-0.22498					184	82	6	0	0	0	0.42921	1	10173	10173		49.211	4.6797	1	2094300	+		12031	28941	9851	9863	13165	13165					0.07953324321988475
FPAPSGYPDL	10	Unmodified	_FPAPSGYPDL_					0	0	0			REV__ENST00000443260.1_1_X:144712299-144712695:+|nuORF	REV__ENST00000443260.1_1_X:144712299-144712695:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.782470703125	2	532.258382	1062.50221	0.53695	0.0002858	-4.0004	-0.0021293	-3.4635	-0.0018435	532.2563919826222	79.387	0.50854	77.047	76.852	77.36	-2.3399					13	9	2	0	0	0	0.026915	1	4266	4266		20.947	4.2295	1	20516	+		12032	25865	9852	9864	13166	13166					-0.026539386850117808
FPAQLNHI	8	Unmodified	_FPAQLNHI_					0	0	0		ENST00000580861.1_1_17:70427332-70599388:-|nuORF;ENST00000581549.1_1_17:70595217-70599388:-|nuORF	ENST00000580861.1_1_17:70427332-70599388:-|nuORF	ENST00000580861.1_1_17:70427332-70599388:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	470.25408935546875	2	470.255977	938.497401	-1.0289	-0.00048387	-3.3636	-0.0015817	-4.3925	-0.0020656	470.2542244942563	34.56	0.46732	34.56	34.304	34.772	0					20	9	3	0	0	0	0.66704	1	1676	1676		50.025	5.4935	1	326420			12033	13991	9853	9865	13167	13167					0.025692219628808743
FPDKGYSF	8	Unmodified	_FPDKGYSF_					0	0	0		nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1;ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF;MAP4K5-TIA1|1|fusion	nc|ENSG00000116001|P31483-2|TIA1	nc|ENSG00000116001|P31483-2|TIA1	MULTI-MSMS	OvCa99_classI_Rep5	1	480.72869873046875	2	480.726718	959.438883	1.4531	0.00069855	1.0297	0.00049502	2.4829	0.0011936	480.72706439710527	90.827	1.2907	90.827	90.421	91.711	0					73	31	3	0	0	0	0.62474	1	9740	9740		58.782	5.4305	1	1548600			12034	3147	9854	9866	13168	13168					-0.04245879402230912
FPDNDQFSN	9	Unmodified	_FPDNDQFSN_					0	0	0		nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2;MSH2|p.G751Efs*12|1|0.6|ENSG00000095002|chr2:47478311-47478311|G/-|frameshift_variant;MSH2|p.T552Pfs*5|1|0.04|ENSG00000095002|chr2:47466801-47466801|A/-|frameshift_variant	nc|ENSG00000095002|P43246-2|MSH2	nc|ENSG00000095002|P43246-2|MSH2	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.335205078125	2	542.222528	1082.4305	0.050751	2.7518E-05	-3.1694	-0.0017185	-3.1186	-0.001691	542.2206554520877	31.615	0.44676	31.615	31.41	31.857	0					17	8	3	0	0	0	0.027462	1	1326	1326		29.17	11.805	1	78861			12035	1918	9855	9867	13169	13169					-0.10741478109503078
FPDTKLFW	8	Unmodified	_FPDTKLFW_					0	0	0			REV__nc|ENSG00000158555|Q8WTR4-3|GDPD5	REV__nc|ENSG00000158555|Q8WTR4-3|GDPD5	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.2861938476562	2	527.273835	1052.53312	-1.2967	-0.00068371	-1.2548	-0.0006616	-2.5514	-0.0013453	527.2744752999788	102.88	0.49277	102.19	101.89	102.38	-0.68459					19	9	4	0	0	0	0.028476	1	9499	9499		26.796	0	1	11145	+		12036	20572	9856	9868	13170	13170					0.008952594198945008
FPECTFGAD	9	Unmodified	_FPECTFGAD_					0	0	0			REV__tr|A0A7D6VY04|A0A7D6VY04_9CLOTDNAmismatchrepairproteinMutLOS=ClostridiumintestinaleOX=36845GN=mutLPE=3SV=1	REV__tr|A0A7D6VY04|A0A7D6VY04_9CLOTDNAmismatchrepairproteinMutLOS=ClostridiumintestinaleOX=36845GN=mutLPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.3236083984375	2	493.699843	985.385133	0.097967	4.8366E-05	2.4546	0.0012118	2.5525	0.0012602	493.701024789227	116.6	0.67001	115.23	114.94	115.61	-1.3645					17	12	2	0	0	0	0.027462	1	10884	10884		45.952	1.8352	1	18799	+		12037	31800	9857	9869	13171	13171					-0.10814419896269101
FPEDSEPIS	9	Unmodified	_FPEDSEPIS_					0	0	0		ENSG00000092421|ENST00000343348|SEMA6A;nc|ENSG00000092421|Q9H2E6-2|SEMA6A	ENSG00000092421|ENST00000343348|SEMA6A	ENSG00000092421|ENST00000343348|SEMA6A	MULTI-SECPEP	OvCa9_classI_Rep3	3	511.2696228027344	2	510.729655	1019.44476	-0.43961	-0.00022452	-2.6783	-0.0013679	-3.1179	-0.0015924	510.72814418428385	88.523	0.93034	86.392	86.163	87.093	-2.1309					31	18	3	0	0	0	0.027462	1	5396	5396		24.203	0	1	73743			12038	1893	9858	9870	13172	13172					-0.06418825681225826
FPEKGYSF	8	Unmodified	_FPEKGYSF_					0	0	0		ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	487.7359619140625	2	487.734543	973.454533	2.472	0.0012057	-0.17516	-8.5433E-05	2.2968	0.0011203	487.73429970760367	88.864	1.3822	88.864	88.298	89.681	0					82	33	3	0	0	0	0.052043	2	9463	9434;9463		161.9	42.341	1	1708900			12039	5595	9859	9871	13173;13174	13174					-0.03325592885187234
FPELDRPDV	9	Unmodified	_FPELDRPDV_					0	0	0		ENST00000563969.5_1_16:67314567-67322708:+|nuORF;nc|ENSG00000196155|Q58EX7-2|PLEKHG4;ENSG00000196155|ENST00000379344|PLEKHG4	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	ENST00000563969.5_1_16:67314567-67322708:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	544.27294921875	2	544.274564	1086.53457	2.0824	0.0011334	-3.7015	-0.0020146	-1.619	-0.0008812	544.2725600694744	84.983	1.0741	84.983	84.631	85.705	0					55	25	3	0	0	0	0.2422	1	8904	8904		69.628	0.8408	1	2611200			12040	8570	9860	9872	13175	13175					-0.005231512820046191
FPEVYDKI	8	Unmodified	_FPEVYDKI_					0	0	0		ENSG00000116133|ENST00000371269|DHCR24;nc|ENSG00000116133|Q15392-2|DHCR24	ENSG00000116133|ENST00000371269|DHCR24	ENSG00000116133|ENST00000371269|DHCR24	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.2773132324219	2	505.7633	1009.51205	0.9545	0.00048275	-1.9999	-0.0010115	-1.0454	-0.00052875	505.76196338536283	85.813	1.0414	83.167	82.993	84.035	-2.6463					22	20	2	0	0	0	0.028476	1	7243	7243		85.359	16.875	1	40928			12041	3157	9861	9873	13176	13176					0.0076724932038132465
FPFAPLPLF	9	Unmodified	_FPFAPLPLF_					0	0	0			REV__ENST00000302625.5_1_2:219825213-219826146:+|nuORF	REV__ENST00000302625.5_1_2:219825213-219826146:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.7996215820312	2	524.796946	1047.57934	2.5467	0.0013365	3.5484	0.0018622	6.0952	0.0031987	524.7989032554841	130.75	1.3336	129.27	128.91	130.24	-1.4779					53	27	3	0	0	0	0.42921	1	12541	12541		49.211	1.2952	1	116520	+		12042	24262	9862	9874	13177	13177					0.05745324321992484
FPFSPPKEN	9	Unmodified	_FPFSPPKEN_					0	0	0		ENST00000256497.8_1_3:5260675-5260837:+|nuORF	ENST00000256497.8_1_3:5260675-5260837:+|nuORF	ENST00000256497.8_1_3:5260675-5260837:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	531.8176879882812	2	531.766374	1061.5182	-0.84893	-0.00045143	1.202	0.0006392	0.3531	0.00018777	532.2689413218317	136.55	0.59021	135.44	135.19	135.78	-1.1076					16	11	2	0	0	0	0.027462	1	11076	11076		29.15	7.1897	1	27233			12043	9825	9863	9875	13178	13178					-0.010102324480840252
FPFTYNLF	8	Unmodified	_FPFTYNLF_					0	0	0			REV__ENST00000528023.3_1_15:41455975-41456569:+|nuORF	REV__ENST00000528023.3_1_15:41455975-41456569:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7728271484375	2	524.760561	1047.50657	1.4353	0.00075321	-2.7137	-0.001424	-1.2783	-0.00067082	524.7575726324957	87.366	0.53571	87.366	87.135	87.671	0					17	12	2	0	0	0	0.028476	1	9223	9223		54.765	5.3231	1	165350	+		12044	27163	9864	9876	13179	13179					-0.015284294714319913
FPFYPYVI	8	Unmodified	_FPFYPYVI_					0	0	0			REV__tr|A0A553SJA6|A0A553SJA6_NIACIXREfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_16240PE=4SV=1	REV__tr|A0A553SJA6|A0A553SJA6_NIACIXREfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_16240PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.29931640625	2	523.273304	1044.53206	1.6328	0.00085438	-2.2943	-0.0012006	-0.66156	-0.00034618	523.2719828534256	95.472	0.79494	95.472	95.161	95.956	0					31	18	2	0	0	0	0.028476	1	10477	10477		43.626	7.1793	1	2346000	+		12045	29985	9865	9877	13180	13180					0.01157045050990746
FPGHTPLQL	9	Unmodified	_FPGHTPLQL_					0	0	0			REV__DMRTC2|p.S254Qfs*3|1|0.13|ENSG00000142025|chr19:41850315-41850315|C/-|frameshift_variant	REV__DMRTC2|p.S254Qfs*3|1|0.13|ENSG00000142025|chr19:41850315-41850315|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	505.27593994140625	2	505.276909	1008.53927	-1.5633	-0.00078991	-2.7597	-0.0013944	-4.323	-0.0021843	505.27546017010985	85.18	1.6887	82.959	82.498	84.187	-2.2204					78	30	3	0	0	0	0.22621	1	5006	5006		71.877	3.0906	1	1500400	+		12046	16307	9866	9878	13181	13181					0.03533777651421133
FPGIVRLLEE	10	Unmodified	_FPGIVRLLEE_					0	0	0			REV__ENST00000476758.1_1_10:27509331-27520733:-|nuORF	REV__ENST00000476758.1_1_10:27509331-27520733:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.8336181640625	2	586.837331	1171.66011	-1.3959	-0.00081919	-4.3296	-0.0025408	-5.7256	-0.00336	586.8348196312893	145.67	2.8806	144.23	143.04	145.92	-1.4357					88	55	2	0	0	0	0.74374	1	14346	14346		25.574	1.0549	1	38613	+		12047	17865	9867	9879	13182	13182					0.08114560574267671
FPGPGPPLFL	10	Unmodified	_FPGPGPPLFL_					0	0	0			REV__ENSG00000177465|ENST00000326303|ACOT4	REV__ENSG00000177465|ENST00000326303|ACOT4	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.81591796875	2	521.292028	1040.5695	0.36846	0.00019208	3.9894	0.0020797	4.3579	0.0022717	521.296612000996	114.35	1.3818	114.23	113.47	114.85	-0.11777					59	27	3	0	0	0	0.026839	1	10944	10944		26.796	0	1	58157	+		12048	22009	9868	9880	13183	13183					0.05084136316600052
FPGPLAQIYL	10	Unmodified	_FPGPLAQIYL_					0	0	0			REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4	REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-MSMS	OvCa99_classI_Rep5	1	559.8185424804688	2	559.815867	1117.61718	2.0742	0.0011611	-0.45737	-0.00025604	1.6168	0.0009051	559.8156915922438	133.1	8.2265	133.1	132.6	140.83	0					464	175	6	0	0	0	0.43592	1	15877	15877		63.306	5.495	1	47573000	+		12049	18871	9869	9881	13184	13184					0.06307790516780187
FPGPLAQIYL	10	Unmodified	_FPGPLAQIYL_					0	0	0			REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4	REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.8157348632812	2	559.815867	1117.61718	3.9956	0.0022368	-4.2464	-0.0023772	-0.25077	-0.00014038	559.813249709843	134.7	2.6126	133.16	132.47	135.08	-1.5437					137	52	4	0	0	0	0.43592	1	12998	12998		63.306	6.5852	1	191680	+		12050	18871	9869	9881	13185	13185					0.06307790516780187
FPGVMENLTI	10	Unmodified	_FPGVMENLTI_					0	0	0		ENST00000527315.5_1_15:69323805-69349033:+|nuORF;nc|ENSG00000290203|Q96PH1-4|NOX5;nc|ENSG00000290203|Q96PH1-6|NOX5;nc|ENSG00000290203|Q96PH1-3|NOX5;nc|ENSG00000290203|Q96PH1-2|NOX5;ENSG00000255346|ENST00000388866|NOX5	ENST00000527315.5_1_15:69323805-69349033:+|nuORF	ENST00000527315.5_1_15:69323805-69349033:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	560.789794921875	2	560.788992	1119.56343	0.076238	4.2753E-05	3.0459	0.0017081	3.1221	0.0017508	560.7906951341574	64.273	2.9179	61.548	60.968	63.886	-2.7245					181	56	6	0	0	0	0.44431	1	4876	4876		62.107	1.9892	1	2758800			12051	9455	9870	9882	13186	13186					0.008432500227854689
FPHRTNKL	8	Unmodified	_FPHRTNKL_					0	0	0			REV__nc|ENSG00000117020|Q9Y243-2|AKT3	REV__nc|ENSG00000117020|Q9Y243-2|AKT3	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3281555175781	2	506.787976	1011.5614	-0.85498	-0.0004333	0.74809	0.00037912	-0.10689	-5.4172E-05	506.78822487976885	66.074	0.74545	66.074	65.707	66.452	0					26	14	2	0	0	0	0.028476	1	6068	6068		19.36	0.25645	1	976660	+		12052	18333	9871	9883	13187	13187					0.05608002119856792
FPIEAVKKN	9	Unmodified	_FPIEAVKKN_					0	0	0			REV__ENSG00000105409|ENST00000648268|ATP1A3	REV__ENSG00000105409|ENST00000648268|ATP1A3	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3032836914062	2	523.305667	1044.59678	-2.1227	-0.0011108	-1.8084	-0.00094634	-3.9311	-0.0020572	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.63422	1	11315	11315		27.882	4.8398	1	183010	+		12053	17724	9872	9884	13188	13188					0.0762661985700106
FPINQYIAN	9	Unmodified	_FPINQYIAN_					0	0	0			REV__tr|A0A7D7A3W5|A0A7D7A3W5_9CLOTGlucose-1-phosphateadenylyltransferaseOS=ClostridiumintestinaleOX=36845GN=glgCPE=3SV=1	REV__tr|A0A7D7A3W5|A0A7D7A3W5_9CLOTGlucose-1-phosphateadenylyltransferaseOS=ClostridiumintestinaleOX=36845GN=glgCPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	539.3204345703125	2	540.279649	1078.54475	0.17898	9.67E-05	-2.5123	-0.0013573	-2.3333	-0.0012606	540.2780009103333	99.673	0.99608	97.988	97.727	98.723	-1.685					28	19	3	0	0	0	0.027462	1	6805	6805		6.7355	0	1	33770	+		12054	32597	9873	9885	13189	13189					0.008614564432036786
FPIRLGGTT	9	Unmodified	_FPIRLGGTT_					0	0	0			REV__nc|ENSG00000168477|P22105-1|TNXB	REV__nc|ENSG00000168477|P22105-1|TNXB	MULTI-SECPEP	OvCa9_classI_Rep2	2	480.2922058105469	2	481.276909	960.539266	1.4386	0.00069237	0.36892	0.00017755	1.8075	0.00086992	481.27640976174536	90.417	0.59197	89.115	88.879	89.471	-1.302					14	11	2	0	0	0	0.027462	1	8010	8010		25.45	0	1	14413	+		12055	21378	9874	9886	13190	13190					0.05741777651417124
FPISDDVGVI	10	Unmodified	_FPISDDVGVI_					0	0	0		PTPRZ1|p.A1698V|1|0.37|ENSG00000106278|chr7:122031486-122031486|C/T|missense_variant	PTPRZ1|p.A1698V|1|0.37|ENSG00000106278|chr7:122031486-122031486|C/T|missense_variant	PTPRZ1|p.A1698V|1|0.37|ENSG00000106278|chr7:122031486-122031486|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	531.2766723632812	2	531.279315	1060.54408	-0.89928	-0.00047777	-3.3392	-0.001774	-4.2385	-0.0022518	531.2775331640955	85.76	2.0555	83.54	82.937	84.992	-2.2204					88	40	3	0	0	0	0.3976	1	5058	5058		68.787	5.4806	1	1646200			12056	15532	9875	9887	13191	13191					0.01622617003522464
FPISILIPK	9	Unmodified	_FPISILIPK_					0	0	0		tr|A0A553SIK5|A0A553SIK5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15045PE=4SV=1	tr|A0A553SIK5|A0A553SIK5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15045PE=4SV=1	tr|A0A553SIK5|A0A553SIK5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15045PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	514.3282470703125	2	514.331153	1026.64775	-0.046085	-2.3703E-05	-3.2145	-0.0016533	-3.2606	-0.001677	514.3294478888197	122.68	0.79058	122.46	122.31	123.11	-0.21803					33	15	3	0	0	0	0.51865	1	11899	11899		40.778	5.1599	1	46008			12057	33392	9876	9888	13192	13192					0.13549568901839848
FPISILIPK	9	Unmodified	_FPISILIPK_					0	0	0		tr|A0A553SIK5|A0A553SIK5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15045PE=4SV=1	tr|A0A553SIK5|A0A553SIK5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15045PE=4SV=1	tr|A0A553SIK5|A0A553SIK5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15045PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	514.331153	1026.64775	1.794	0.00092272	-4.8575	-0.0024983	-3.0634	-0.0015756	514.3286051760361	123.76	0.61982	122.72	122.51	123.13	-1.0377	0.042726	-0.0013696	NaN	40.778	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39547			12058	33392	9876	9888							0.13549568901839848
FPISILIPK	9	Unmodified	_FPISILIPK_					0	0	0		tr|A0A553SIK5|A0A553SIK5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15045PE=4SV=1	tr|A0A553SIK5|A0A553SIK5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15045PE=4SV=1	tr|A0A553SIK5|A0A553SIK5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15045PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	514.331153	1026.64775	-0.94207	-0.00048454	-2.0678	-0.0010635	-3.0098	-0.0015481	514.3302057376669	124.23	0.66225	122.84	122.57	123.23	-1.3908	0.168	0.0015001	NaN	40.778	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29977			12059	33392	9876	9888							0.13549568901839848
FPITIDIPF	9	Unmodified	_FPITIDIPF_					0	0	0			REV__tr|A0A553SK72|A0A553SK72_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18265PE=4SV=1	REV__tr|A0A553SK72|A0A553SK72_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18265PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.278076171875	2	531.797143	1061.57973	-1.1154	-0.00059314	0.46863	0.00024922	-0.64672	-0.00034393	531.797454761535	58.667	1.3486	55.275	54.752	56.1	-3.392					42	26	2	0	0	0	0.027462	1	3911	3911		24.203	0.68005	1	109250	+		12060	30085	9877	9889	13193	13193					0.05140699251182923
FPKDSIIYL	9	Unmodified	_FPKDSIIYL_					0	0	0		ENSG00000174173|ENST00000309922|TRMT10C	ENSG00000174173|ENST00000309922|TRMT10C	ENSG00000174173|ENST00000309922|TRMT10C	MULTI-MSMS	OvCa99_classI_Rep5	1	548.3088989257812	2	548.307875	1094.6012	1.1762	0.00064491	0.93265	0.00051138	2.1088	0.0011563	548.3082656962919	146.62	1.5165	146.62	146.18	147.69	0					77	30	4	0	0	0	0.3076	1	17178	17178		62.107	7.3311	1	1380800			12061	7445	9878	9890	13194	13194					0.05768084279884533
FPKGFSVEL	9	Unmodified	_FPKGFSVEL_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-MSMS	OvCa9_classI_Rep2	2	512.2791748046875	2	512.279118	1022.54368	0.55055	0.00028204	-0.84106	-0.00043086	-0.29051	-0.00014882	512.2785275859809	112.08	2.0707	111.96	111.24	113.31	-0.12174					99	41	3	0	0	0	0.19758	2	10608	10573;10608		76.774	12.567	1	239540			12062	3164	9879	9891	13195;13196	13196					0.03331242074330021
FPKGFSVEL	9	Unmodified	_FPKGFSVEL_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-MSMS	OvCa9_classI_Rep3	3	512.2800903320312	2	512.279118	1022.54368	1.3497	0.00069141	-1.6499	-0.00084521	-0.30022	-0.0001538	512.2781541781906	113.13	2.1161	112.06	111.32	113.43	-1.0753					103	41	3	0	0	0	0.26076	3	8280	8269;8274;8280		67.494	12.666	1	258950			12063	3164	9879	9891	13197;13198;13199	13199					0.03331242074330021
FPKGFSVEL	9	Unmodified	_FPKGFSVEL_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.2793579101562	2	512.279118	1022.54368	0.33151	0.00016983	-0.92587	-0.0004743	-0.59436	-0.00030448	512.2784840178991	113.37	2.0485	111.93	111.26	113.31	-1.4461					104	40	3	0	0	0	0.070405	2	10479	10479;10491		107.01	33.033	1	322470			12064	3164	9879	9891	13200;13201	13200					0.03331242074330021
FPKKELELQI	10	Unmodified	_FPKKELELQI_					0	0	0		ENSG00000123561|ENST00000372563|SERPINA7	ENSG00000123561|ENST00000372563|SERPINA7	ENSG00000123561|ENST00000372563|SERPINA7	MULTI-MSMS	OvCa9_classI_Rep2	2	622.86572265625	2	622.866089	1243.71762	0.080852	5.036E-05	0.055178	3.4369E-05	0.13603	8.4729E-05	622.8660250967379	130.93	1.4333	130.7	130.26	131.69	-0.22696					79	28	4	0	0	0	0.48398	1	12879	12879		56.434	0	1	289850			12065	3604	9880	9892	13202	13202					0.10551402779788077
FPKLVNRVA	9	Unmodified	_FPKLVNRVA_					0	0	0			REV__ENST00000587557.5_1_19:9454019-9454262:+|nuORF	REV__ENST00000587557.5_1_19:9454019-9454262:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.2695922851562	2	522.321651	1042.62875	0.69636	0.00036373	-2.7886	-0.0014565	-2.0922	-0.0010928	522.3203068638487	111.49	1.3305	111.35	110.98	112.31	-0.13961					50	26	3	0	0	0	0.027462	1	10482	10482		29.15	0	1	56900	+		12066	27878	9881	9893	13203	13203					0.10914032330811096
FPKMAVFGQHI	11	Unmodified	_FPKMAVFGQHI_					0	0	0			REV__ENST00000569384.1_1_22:31369560-31371224:+|nuORF	REV__ENST00000569384.1_1_22:31369560-31371224:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	637.8352661132812	2	637.839351	1273.66415	-2.3478	-0.0014975	-4.4717	-0.0028522	-6.8194	-0.0043497	637.8363950156421	141.82	0.54611	140.81	140.59	141.13	-1.0106					28	10	3	0	0	0	0.65947	1	11739	11739		39.253	0.49923	1	123960	+		12067	27725	9882	9894	13204	13204					0.03826326796320245
FPKMSSRPF	9	Unmodified	_FPKMSSRPF_					0	0	0			REV__tr|A0A553SF16|A0A553SF16_NIACIAsparaginaseOS=NialliacirculansOX=1397GN=CEQ21_08100PE=4SV=1	REV__tr|A0A553SF16|A0A553SF16_NIACIAsparaginaseOS=NialliacirculansOX=1397GN=CEQ21_08100PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	549.2862548828125	2	548.784044	1095.55354	1.9742	0.0010834	-2.4545	-0.001347	-0.4803	-0.00026358	548.7824739396441	120.3	3.6821	120.3	119.83	123.51	0					197	82	4	0	0	0	0.53483	1	13799	13799		39.253	0	1	5725800	+		12068	29527	9883	9895	13205	13205					0.009581068080706245
FPKNFSISI	9	Unmodified	_FPKNFSISI_					0	0	0			REV__tr|A0A553SKX6|A0A553SKX6_NIACISpoIVBpeptidaseOS=NialliacirculansOX=1397GN=spoIVBPE=4SV=1	REV__tr|A0A553SKX6|A0A553SKX6_NIACISpoIVBpeptidaseOS=NialliacirculansOX=1397GN=spoIVBPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	526.7911987304688	2	526.792392	1051.57023	1.8533	0.00097631	-3.8839	-0.002046	-2.0306	-0.0010697	526.7902853033543	92.746	0.75069	92.746	92.385	93.136	0					36	17	3	0	0	0	0.21231	1	10032	10032		74.255	5.4682	1	1904000	+		12069	30163	9884	9896	13206	13206					0.046509309656585174
FPKPFKLQ	8	Unmodified	_FPKPFKLQ_					0	0	0		ENSG00000225614|ENST00000565624|ZNF469	ENSG00000225614|ENST00000565624|ZNF469	ENSG00000225614|ENST00000565624|ZNF469	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.3260803222656	2	502.80002	1003.58549	0.0047076	2.367E-06	4.2747	0.0021493	4.2794	0.0021517	502.8022716580341	114.94	0.36569	113.54	113.36	113.72	-1.3977					9	6	2	0	0	0	0.028476	1	10668	10668		33.516	3.674	1	14952			12070	9263	9885	9897	13207	13207					0.08383842553507748
FPKSSAGAVGR	11	Unmodified	_FPKSSAGAVGR_					0	0	0		ENST00000338008.9_1_5:79703877-79729946:+|nuORF	ENST00000338008.9_1_5:79703877-79729946:+|nuORF	ENST00000338008.9_1_5:79703877-79729946:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	539.2720336914062	2	538.795998	1075.57744	-0.32003	-0.00017243	-1.5324	-0.00082566	-1.8524	-0.00099809	539.2963919566694	66.961	0.84056	63.471	63.247	64.087	-3.4902					35	16	3	0	0	0	0.02523	1	4906	4906		25.126	5.1292	1	100950			12071	10530	9886	9898	13208	13208					0.04267663566088231
FPKVPACEY	9	Unmodified	_FPKVPACEY_					0	0	0			REV__PER3|p.P856Lfs*32|1|0.12|ENSG00000049246|chr1:7827515-7827515|C/-|frameshift_variant	REV__PER3|p.P856Lfs*32|1|0.12|ENSG00000049246|chr1:7827515-7827515|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	527.25634765625	2	527.257328	1052.5001	1.516	0.00079934	-2.6806	-0.0014134	-1.1646	-0.00061402	527.255945355817	135.1	3.2133	135.1	134.61	137.82	0					154	68	4	0	0	0	0.38529	1	15798	15798		53.351	0	1	1952100	+		12072	16675	9887	9899	13209	13209					-0.02404690694470446
FPLAPQGLYL	10	Unmodified	_FPLAPQGLYL_					0	0	0		ENST00000525137.1_2_11:71146423-71148912:-|nuORF	ENST00000525137.1_2_11:71146423-71148912:-|nuORF	ENST00000525137.1_2_11:71146423-71148912:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	559.81591796875	2	559.815867	1117.61718	2.2471	0.001258	-3.9874	-0.0022322	-1.7403	-0.00097425	559.8135749692154	125.52	0.98251	125.52	125.25	126.23	0					61	22	4	0	0	0	0.65434	1	14543	14543		35.618	0.46626	1	2168600			12073	13182	9888	9900	13210	13210					0.06307790516802925
FPLDALSI	8	Unmodified	_FPLDALSI_					0	0	0			REV__nc|ENSG00000151718|Q6AWC2-4|WWC2	REV__nc|ENSG00000151718|Q6AWC2-4|WWC2	MULTI-MSMS	OvCa99_classI_Rep5	1	438.2468566894531	2	438.247286	874.48002	2.9186	0.0012791	-4.4453	-0.0019481	-1.5267	-0.00066908	438.24521473388324	81.992	1.0006	81.992	81.694	82.694	0					43	23	3	0	0	0	0.73626	1	8474	8474		33.516	0.70317	1	1025500	+		12074	20250	9889	9901	13211	13211					0.03775881637238854
FPLDALSI	8	Unmodified	_FPLDALSI_					0	0	0			REV__nc|ENSG00000151718|Q6AWC2-4|WWC2	REV__nc|ENSG00000151718|Q6AWC2-4|WWC2	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	438.247286	874.48002	2.9186	0.0012791	-4.4453	-0.0019481	-1.5267	-0.00066908	438.24521473388324	81.992	1.0006	81.992	81.694	82.694	0	0	0	NaN	33.516	43	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1025500	+		12075	20250	9889	9901							0.03775881637238854
FPLEMLELN	9	Unmodified	_FPLEMLELN_					0	0	0			REV__ENSG00000163827|ENST00000395905|LRRC2	REV__ENSG00000163827|ENST00000395905|LRRC2	MULTI-MSMS	OvCa9_classI_Rep2	2	553.2849731445312	2	553.283543	1104.55253	0.8514	0.00047107	2.4441	0.0013523	3.2955	0.0018233	553.284790859176	109.08	1.8792	108.85	108.22	110.1	-0.22498					106	37	5	0	0	0	0.13504	1	10219	10219		87.696	4.946	1	452190	+		12076	20899	9890	9902	13212	13212					0.004438476484892817
FPLEMLELN	9	Unmodified	_FPLEMLELN_					0	0	0			REV__ENSG00000163827|ENST00000395905|LRRC2	REV__ENSG00000163827|ENST00000395905|LRRC2	MULTI-MSMS	OvCa9_classI_Rep3	3	553.2840576171875	2	553.283543	1104.55253	-0.59107	-0.00032703	3.9399	0.0021799	3.3488	0.0018528	553.2856857803561	109.73	1.7878	108.59	107.77	109.56	-1.1444					78	33	4	0	0	0	0.074342	1	7916	7916		104.75	19.831	1	975780	+		12077	20899	9890	9902	13213	13213					0.004438476484892817
FPLEMLELN	9	Unmodified	_FPLEMLELN_					0	0	0			REV__ENSG00000163827|ENST00000395905|LRRC2	REV__ENSG00000163827|ENST00000395905|LRRC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.2850341796875	2	553.283543	1104.55253	0.99546	0.00055077	2.2542	0.0012472	3.2497	0.001798	553.284772614335	110.27	1.3677	108.67	108.23	109.59	-1.6011					78	25	5	0	0	0	0.16562	1	10170	10170		82.241	2.5279	1	1056000	+		12078	20899	9890	9902	13214	13214					0.004438476484892817
FPLFVLAL	8	Unmodified	_FPLFVLAL_					0	0	0		ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	MULTI-SECPEP	OvCa99_classI_Rep5	1	460.592529296875	2	460.286214	918.557876	0.30742	0.0001415	-3.6542	-0.001682	-3.3468	-0.0015405	460.2843312479835	105.35	1.4435	105.35	104.83	106.27	0					71	32	3	0	0	0	0.028476	1	11792	11792		24.504	0	1	817890			12079	2982	9891	9903	13215	13215					0.09533939293260119
FPLGFSWGV	9	Unmodified	_FPLGFSWGV_					0	0	0		LCTL|p.W241Gfs*20|1|0.09|ENSG00000188501|chr15:66558022-66558022|G/-|frameshift_variant;ENSG00000188501|ENST00000695545|LCTL	LCTL|p.W241Gfs*20|1|0.09|ENSG00000188501|chr15:66558022-66558022|G/-|frameshift_variant	LCTL|p.W241Gfs*20|1|0.09|ENSG00000188501|chr15:66558022-66558022|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	504.2969055175781	2	505.260728	1008.5069	-1.1199	-0.00056584	1.0782	0.00054475	-0.041734	-2.1087E-05	505.2609085747234	103.88	0.74268	103.31	103.13	103.87	-0.57639					35	14	3	0	0	0	0.027462	1	9583	9583		21.702	1.2205	1	54229			12080	8474	9892	9904	13216	13216					0.0029899024842734434
FPLGQLELSKL	11	Unmodified	_FPLGQLELSKL_					0	0	0			REV__ENST00000325656.6_1_11:67226939-67227164:+|nuORF	REV__ENST00000325656.6_1_11:67226939-67227164:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	622.8674926757812	2	622.866089	1243.71762	0.080852	5.036E-05	0.055178	3.4369E-05	0.13603	8.4729E-05	622.8660250967379	130.93	1.4333	130.7	130.26	131.69	-0.22696					79	28	4	0	0	0	0.63561	1	12858	12858		41.427	0.64845	1	289850	+		12081	24486	9893	9905	13217	13217					0.10551402779788077
FPLIVVIAL	9	Unmodified	_FPLIVVIAL_					0	0	0			REV__tr|A0A7D6ZV75|A0A7D6ZV75_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_14075PE=4SV=1	REV__tr|A0A7D6ZV75|A0A7D6ZV75_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_14075PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.3033752441406	2	492.828246	983.64194	-1.5655	-0.00077155	-2.8819	-0.0014203	-4.4474	-0.0021918	492.8266078433632	107.46	1.3422	105.58	105.17	106.51	-1.8785					52	26	4	0	0	0	0.027462	1	9768	9768		39.021	0	1	355090	+		12082	32241	9894	9906	13218	13218					0.14946470390168543
FPLKPTYID	9	Unmodified	_FPLKPTYID_					0	0	0		tr|A0A7D6ZHI9|A0A7D6ZHI9_9CLOTLysoplasmalogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23375PE=3SV=1	tr|A0A7D6ZHI9|A0A7D6ZHI9_9CLOTLysoplasmalogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23375PE=3SV=1	tr|A0A7D6ZHI9|A0A7D6ZHI9_9CLOTLysoplasmalogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23375PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	547.3029174804688	2	547.30005	1092.58555	0.56244	0.00030782	3.3126	0.001813	3.875	0.0021208	547.30162768917	159.54	1.2192	159.54	159.24	160.45	0					63	24	4	0	0	0	0.35444	1	18682	18682		56.721	1.2168	1	381630			12083	35579	9895	9907	13219	13219					0.042957977628248045
FPLLAIRKIR	10	Unmodified	_FPLLAIRKIR_					0	0	0			REV__tr|A0A553SK96|A0A553SK96_NIACIStageIVsporulationproteinFBOS=NialliacirculansOX=1397GN=CEQ21_18435PE=3SV=1	REV__tr|A0A553SK96|A0A553SK96_NIACIStageIVsporulationproteinFBOS=NialliacirculansOX=1397GN=CEQ21_18435PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	409.6077880859375	3	409.608042	1225.8023	1.1396	0.00046679	-1.3301	-0.0005448	-0.19045	-7.8008E-05	409.6074659919173	107.95	5.8573	106.76	106.27	112.13	-1.1978					409	114	4	0	0	0	0.69073	1	8066	8066		31.53	0	1	1037400	+		12084	30098	9896	9908	13220	13220					0.1984281810707671
FPLLPFLLP	9	Unmodified	_FPLLPFLLP_					0	0	0			REV__ENST00000492798.1_1_9:136217794-136218218:+|nuORF	REV__ENST00000492798.1_1_9:136217794-136218218:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.8031616210938	2	528.828246	1055.64194	-1.3935	-0.00073692	-3.1702	-0.0016765	-4.5637	-0.0024134	528.8266579891601	106.2	1.2885	104.18	103.74	105.03	-2.0161					71	24	4	0	0	0	0.027462	1	9610	9610		39.021	0	1	725180	+		12085	26695	9897	9909	13221	13221					0.11634470390185925
FPLLPLPSSF	10	Unmodified	_FPLLPLPSSF_					0	0	0			REV__ENST00000336440.3_1_14:69259862-69260099:-|nuORF	REV__ENST00000336440.3_1_14:69259862-69260099:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	559.31982421875	2	559.318243	1116.62193	0.75145	0.0004203	-0.26593	-0.00014874	0.48552	0.00027156	559.3180111737765	105.5	0.65549	105.5	105.27	105.92	0					30	14	3	0	0	0	0.58282	1	11852	11852		44.117	5.3632	1	1403800	+		12086	24585	9898	9910	13222	13222					0.06828674659550416
FPLPAERSP	9	Unmodified	_FPLPAERSP_					0	0	0			REV__nc|ENSG00000109756|Q9Y4G8|RAPGEF2	REV__nc|ENSG00000109756|Q9Y4G8|RAPGEF2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.8143615722656	2	507.274367	1012.53418	0.43818	0.00022228	-0.61917	-0.00031409	-0.18098	-9.1807E-05	507.2744332912854	97.595	0.55904	95.217	94.859	95.418	-2.3786					16	10	2	0	0	0	0.027411	1	8667	8667		64.207	24.954	1	46831	+		12087	17946	9899	9911	13223	13223					0.028414737888056152
FPLPHRVL	8	Unmodified	_FPLPHRVL_					0	0	0		ENSG00000105640|ENST00000222247|RPL18A	ENSG00000105640|ENST00000222247|RPL18A	ENSG00000105640|ENST00000222247|RPL18A	MULTI-MSMS	OvCa99_classI_Rep5	1	489.8003234863281	2	489.797812	977.581071	0.35762	0.00017516	2.7923	0.0013677	3.1499	0.0015428	489.79900077673824	160.64	3.1469	160.64	159.38	162.53	0					149	62	3	0	0	0	0.75915	1	18918	18918		20.482	0.48506	1	288360			12088	2477	9900	9912	13224	13224					0.0913837813061491
FPLRSSIRCR	10	Unmodified	_FPLRSSIRCR_					0	0	0			REV__ENST00000481849.5_1_6:31321970-31322072:-|nuORF	REV__ENST00000481849.5_1_6:31321970-31322072:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	412.23175048828125	3	412.232758	1233.67644	1.934	0.00079726	-4.4887	-0.0018504	-2.5547	-0.0010531	412.2308161483838	65.879	3.828	62.933	62.452	66.28	-2.9459					181	75	4	0	0	0	0.67987	1	2687	2687		32.751	6.0008	1	1016400	+		12089	26490	9901	9913	13225	13225					0.06895363259332044
FPLSFPISKL	10	Unmodified	_FPLSFPISKL_					0	0	0		ENSG00000158158|ENST00000377075|CNNM4	ENSG00000158158|ENST00000377075|CNNM4	ENSG00000158158|ENST00000377075|CNNM4	MSMS	OvCa99_classI_Rep5	1	574.8402099609375	2	574.839342	1147.66413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.924	1	86.924	86.424	87.424	0								0	0	0	0.11716	1	9185	9185		62.107	1.1355	1				12090	5935	9902	9914	13226	13226					0.0962065006795001
FPLVKNAR	8	Unmodified	_FPLVKNAR_					0	0	0		DUSP19|p.S178P|1|0.09|ENSG00000162999|chr2:183095536-183095536|T/C|missense_variant	DUSP19|p.S178P|1|0.09|ENSG00000162999|chr2:183095536-183095536|T/C|missense_variant	DUSP19|p.S178P|1|0.09|ENSG00000162999|chr2:183095536-183095536|T/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.7740173339844	2	472.787444	943.560336	0.0097067	4.5892E-06	-0.83051	-0.00039265	-0.8208	-0.00038807	472.7872286450501	70.645	0.29282	67.164	66.934	67.227	-3.4812					6	5	2	0	0	0	0.028476	1	5324	5324		31.955	0	1	17069			12091	766	9903	9915	13227	13227					0.08629787750930973
FPLVVLTVIG	10	Unmodified	_FPLVVLTVIG_					0	0	0			REV__nc|ENSG00000288611|P48145|NPBWR1	REV__nc|ENSG00000288611|P48145|NPBWR1	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.333984375	2	529.336436	1056.65832	-1.0627	-0.00056254	-3.1077	-0.001645	-4.1704	-0.0022076	529.3346373685346	123.64	1.5102	122.27	121.95	123.46	-1.3666					51	29	4	0	0	0	0.56767	1	11708	11708		45.952	0	1	128680	+		12092	29207	9904	9916	13228	13228					0.13225551556251958
FPMLLFLDI	9	Unmodified	_FPMLLFLDI_					0	0	0			REV__tr|A0A553SKD9|A0A553SKD9_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_18645PE=4SV=1	REV__tr|A0A553SKD9|A0A553SKD9_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_18645PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	554.80517578125	2	554.809196	1107.60384	1.6446	0.00091244	-3.7817	-0.0020981	-2.1371	-0.0011857	554.8069567094944	79.349	2.1187	79.349	78.54	80.659	0					119	51	4	0	0	0	0.42057	1	8052	8052		50.025	0.48849	1	5170200	+		12093	30113	9905	9917	13229	13229					0.054342164132094695
FPMPQPIPEN	10	Unmodified	_FPMPQPIPEN_					0	0	0			REV__nc|ENSG00000081026|Q5TCQ9-2|MAGI3	REV__nc|ENSG00000081026|Q5TCQ9-2|MAGI3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	584.328369140625	2	585.286617	1168.55868	-0.044281	-2.5917E-05	3.0521	0.0017864	3.0078	0.0017604	585.2868503143446	113.7	1.2509	112.25	111.95	113.2	-1.4461					58	24	3	0	0	0	0.026551	1	10509	10509		69.628	9.6968	1	243780	+		12094	28741	9906	9918	13230	13230					-0.01885634119958013
FPNEKAAIKA	10	Unmodified	_FPNEKAAIKA_					0	0	0		nc|ENSG00000185946|Q96LT9-2|RNPC3;ENSG00000185946|ENST00000423855|RNPC3	nc|ENSG00000185946|Q96LT9-2|RNPC3	nc|ENSG00000185946|Q96LT9-2|RNPC3	MULTI-MSMS	OvCa99_classI_Rep5	1	544.806396484375	2	544.808574	1087.60259	-0.61406	-0.00033454	-2.3138	-0.0012606	-2.9279	-0.0015951	544.8071841062205	24.978	0.30361	24.978	24.838	25.142	0					8	5	2	0	0	0	0.75313	1	523	523		24.519	1.4767	1	40005			12095	8302	9907	9919	13231	13231					0.06229718368649628
FPNEMIQVMM	10	Unmodified	_FPNEMIQVMM_					0	0	0			REV__ENST00000533705.5_1_9:86284090-86294929:-|nuORF	REV__ENST00000533705.5_1_9:86284090-86294929:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	620.2832641601562	2	620.282163	1238.54977	0.019102	1.1848E-05	1.8631	0.0011556	1.8822	0.0011675	620.2832553138567	131.4	0.68811	131.18	130.95	131.64	-0.22696					26	13	2	0	0	0	0.55359	1	12949	12949		47.657	3.5405	1	59357	+		12096	19248	9908	9920	13232	13232					-0.05996067072328515
FPNEMIQVMM	10	Unmodified	_FPNEMIQVMM_					0	0	0			REV__ENST00000533705.5_1_9:86284090-86294929:-|nuORF	REV__ENST00000533705.5_1_9:86284090-86294929:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	620.282163	1238.54977	0.77336	0.0004797	-4.9308	-0.0030585	-4.1575	-0.0025788	620.7815560146411	131.57	0.18677	131.57	131.48	131.67	0	0.19606	-0.0082072	NaN	47.657	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29604	+		12097	19248	9908	9920							-0.05996067072328515
FPNEMIQVMM	10	Unmodified	_FPNEMIQVMM_					0	0	0			REV__ENST00000533705.5_1_9:86284090-86294929:-|nuORF	REV__ENST00000533705.5_1_9:86284090-86294929:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	620.282163	1238.54977	0.019102	1.1848E-05	1.8631	0.0011556	1.8822	0.0011675	620.2832553138567	131.4	0.68811	131.18	130.95	131.64	-0.22696	-0.19606	0.00022109	NaN	47.657	26	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59357	+		12098	19248	9908	9920							-0.05996067072328515
FPNESTPVPT	10	Unmodified	_FPNESTPVPT_					0	0	0			REV__ENSG00000162188|ENST00000294117|GNG3	REV__ENSG00000162188|ENST00000294117|GNG3	MULTI-SECPEP	OvCa9_classI_Rep2	2	543.7960205078125	2	544.766571	1087.51859	-0.12058	-6.5685E-05	-0.032515	-1.7713E-05	-0.15309	-8.3399E-05	544.7664069190107	107.74	1.2204	107.43	106.82	108.04	-0.30836					55	24	4	0	0	0	0.026891	1	10013	10013		47.657	22.083	1	72978	+		12099	20723	9909	9921	13233	13233					-0.021668575189096373
FPNFLLKKT	9	Unmodified	_FPNFLLKKT_					0	0	0		ENST00000271277.10_1_1:112938840-112954920:+|nuORF	ENST00000271277.10_1_1:112938840-112954920:+|nuORF	ENST00000271277.10_1_1:112938840-112954920:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	554.3335571289062	2	554.331685	1106.64882	1.2798	0.00070944	0.44245	0.00024527	1.7223	0.00095471	554.3318219733803	145.31	1.6317	145.31	144.99	146.62	0					56	33	3	0	0	0	0.33652	1	16984	16984		58.782	0	1	261590			12100	9990	9910	9922	13234	13234					0.09975783270760985
FPNIPGKSL	9	Unmodified	_FPNIPGKSL_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	OvCa9_classI_Rep2	2	486.7786560058594	2	486.779285	971.544017	1.7767	0.00086488	-2.0258	-0.00098612	-0.24908	-0.00012125	486.77825631265245	90.442	2.3113	89.14	88.631	90.942	-1.302					121	44	4	0	0	0	0.051592	11	8013	7977;7983;7989;7995;8001;8007;8013;8019;8027;8035;8041		117.81	44.576	1	1734700			12101	5090	9911	9923	13235;13236;13237;13238;13239;13240;13241;13242;13243;13244;13245	13241					0.057106617941940385
FPNIPGKSL	9	Unmodified	_FPNIPGKSL_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.7798767089844	2	486.779285	971.544017	-1.3336	-0.00064916	0.71398	0.00034755	-0.6196	-0.00030161	486.779577553325	91.231	2.9949	89.206	88.469	91.464	-2.0241					138	60	4	0	0	0	0.024645	11	5716	5684;5694;5698;5704;5710;5716;5722;5729;5742;5748;5761		141.52	67.265	1	2526800			12102	5090	9911	9923	13246;13247;13248;13249;13250;13251;13252;13253;13254;13255;13256	13251					0.057106617941940385
FPNIPGKSL	9	Unmodified	_FPNIPGKSL_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.7799072265625	2	486.779285	971.544017	-0.46352	-0.00022563	0.041634	2.0266E-05	-0.42189	-0.00020537	486.7792663388306	91.629	2.5685	89.086	88.501	91.07	-2.5425					112	50	3	0	0	0	0.036986	8	7926	7903;7914;7926;7938;7950;7962;7975;8001		129.42	49.518	1	2258400			12103	5090	9911	9923	13257;13258;13259;13260;13261;13262;13263;13264	13259					0.057106617941940385
FPNLFPPLKP	10	Unmodified	_FPNLFPPLKP_					0	0	0		ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	ENSG00000162496|ENST00000616661|DHRS3	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.2847900390625	2	585.33951	1168.66447	1.8875	0.0011048	-3.6164	-0.0021168	-1.7289	-0.001012	585.3371084924502	78.274	0.73925	78.274	78.011	78.75	0					24	17	2	0	0	0	0.026752	1	7985	7985		44.117	9.9443	1	467760			12104	6187	9912	9924	13265	13265					0.08688069787763197
FPNQKIVAN	9	Unmodified	_FPNQKIVAN_					0	0	0			REV__ENSG00000133424|ENST00000397394|LARGE1	REV__ENSG00000133424|ENST00000397394|LARGE1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.3092651367188	2	515.787641	1029.56073	-1.363	-0.00070301	1.0761	0.00055504	-0.28689	-0.00014797	515.7879837718604	100.3	1.1255	97.974	97.468	98.593	-2.3253					49	21	3	0	0	0	0.027462	1	8915	8915		30.504	6.9809	1	173250	+		12105	19145	9913	9925	13266	13266					0.047131626801501625
FPNYSSELN	9	Unmodified	_FPNYSSELN_					0	0	0		nc|ENSG00000230099|A0A0C4DH59|TRBV5-4;nc|ENSG00000211731|A0A0A0MS05|TRBV5-7;nc|ENSG00000211728|A0A599|TRBV5-6;nc|ENSG00000211725|A0A597|TRBV5-5	nc|ENSG00000230099|A0A0C4DH59|TRBV5-4	nc|ENSG00000230099|A0A0C4DH59|TRBV5-4	MULTI-MSMS	OvCa99_classI_Rep5	1	535.7426147460938	2	535.743096	1069.47164	0.089342	4.7864E-05	-4.2084	-0.0022546	-4.119	-0.0022068	535.7407251927228	65.019	0.79772	65.019	64.71	65.507	0					52	19	3	0	0	0	0.1944	1	5934	5934		77.318	3.3428	1	5290900			12106	15290	9914	9926	13267	13267					-0.060317170700500355
FPPFFFLF	8	Unmodified	_FPPFFFLF_					0	0	0			REV__tr|A0A7D6ZUM4|A0A7D6ZUM4_9CLOTDUF2085domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12555PE=4SV=1	REV__tr|A0A7D6ZUM4|A0A7D6ZUM4_9CLOTDUF2085domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12555PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.8064575195312	2	531.278389	1060.54223	-1.3906	-0.00073879	-0.34995	-0.00018592	-1.7405	-0.00092471	531.2788893533983	93.971	0.75861	91.463	91.212	91.971	-2.5072					13	9	2	0	0	0	0.028476	1	8242	8242		24.504	7.799	1	43980	+		12107	32224	9915	9927	13268	13268					0.01437652776212417
FPPGGFGR	8	Unmodified	_FPPGGFGR_					0	0	0		ENST00000249883.9_1_3:134075432-134075489:-|nuORF	ENST00000249883.9_1_3:134075432-134075489:-|nuORF	ENST00000249883.9_1_3:134075432-134075489:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	417.7172546386719	2	417.716488	833.418422	1.5603	0.00065178	0.56199	0.00023475	2.1223	0.00088653	417.7165732909185	155.81	4.0147	155.81	153.69	157.7	0					162	79	3	0	0	0	0.72922	1	18380	18380		37.028	3.5129	1	421790			12108	9789	9916	9928	13269	13269					-0.004950052713866171
FPPGGFGR	8	Unmodified	_FPPGGFGR_					0	0	0		ENST00000249883.9_1_3:134075432-134075489:-|nuORF	ENST00000249883.9_1_3:134075432-134075489:-|nuORF	ENST00000249883.9_1_3:134075432-134075489:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	417.7171936035156	2	417.716488	833.418422	-1.4249	-0.00059521	1.2168	0.00050829	-0.20809	-8.6922E-05	417.71682894919303	72.477	2.986	69.08	68.716	71.702	-3.3961					112	61	3	0	0	0	0.7043	1	5571	5571		42.474	5.446	1	629690			12109	9789	9916	9928	13270	13270					-0.004950052713866171
FPPGGFGR	8	Unmodified	_FPPGGFGR_					0	0	0		ENST00000249883.9_1_3:134075432-134075489:-|nuORF	ENST00000249883.9_1_3:134075432-134075489:-|nuORF	ENST00000249883.9_1_3:134075432-134075489:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	417.716488	833.418422	0.96582	0.00040344	-0.51811	-0.00021642	0.44772	0.00018702	417.71600910367505	71.499	2.1947	68.992	68.385	70.58	-2.5071	-0.044379	-0.00093632	NaN	42.474	102	41	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188100			12110	9789	9916	9928							-0.004950052713866171
FPPGGKIAPL	10	Unmodified	_FPPGGKIAPL_					0	0	0		ENST00000264956.10_2_4:5813500-5814718:+|nuORF	ENST00000264956.10_2_4:5813500-5814718:+|nuORF	ENST00000264956.10_2_4:5813500-5814718:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.3334045410156	2	498.797478	995.580402	1.1975	0.00059729	-2.8061	-0.0013997	-1.6086	-0.00080237	498.7959600893826	126.05	0.41586	124.98	124.76	125.18	-1.0715					9	7	2	0	0	0	0.026612	1	9804	9804		45.952	12.436	1	8465.2			12111	9939	9917	9929	13271	13271					0.08243538690885543
FPPLAYSTPQ	10	Unmodified	_FPPLAYSTPQ_					0	0	0		nc|ENSG00000164244|Q96M27-5|PRRC1;nc|ENSG00000164244|Q96M27-4|PRRC1;ENSG00000164244|ENST00000296666|PRRC1;nc|ENSG00000164244|Q96M27-3|PRRC1;nc|ENSG00000164244|Q96M27-2|PRRC1	nc|ENSG00000164244|Q96M27-5|PRRC1	nc|ENSG00000164244|Q96M27-5|PRRC1	MULTI-SECPEP	OvCa9_classI_Rep3	3	560.80517578125	2	560.787307	1119.56006	-1.714	-0.0009612	1.3511	0.0007577	-0.36288	-0.0002035	560.7879231859195	92.731	0.66426	90.769	90.514	91.178	-1.9617					23	13	2	0	0	0	0.026915	1	5864	5864		27.882	0	1	32133			12112	15143	9918	9930	13272	13272					0.005063232404154405
FPPLGFRKL	9	Unmodified	_FPPLGFRKL_					0	0	0		ENST00000539759.5_1_11:47639025-47663996:-|nuORF	ENST00000539759.5_1_11:47639025-47663996:-|nuORF	ENST00000539759.5_1_11:47639025-47663996:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3021240234375	2	537.826569	1073.63859	-0.28334	-0.00015239	-0.86174	-0.00046347	-1.1451	-0.00061585	537.8258587894426	42.805	0.39001	42.805	42.624	43.014	0					14	8	2	0	0	0	0.027433	1	2792	2792		38.806	0	1	111250			12113	13443	9919	9931	13273	13273					0.10471220336171427
FPPLPEVSR	9	Unmodified	_FPPLPEVSR_					0	0	0			REV__ENST00000274979.12_2_2:242163924-242164206:+|nuORF	REV__ENST00000274979.12_2_2:242163924-242164206:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.3115844726562	2	521.290017	1040.56548	-1.0297	-0.00053678	1.3636	0.00071081	0.33386	0.00017404	521.2905226232507	84.479	1.3837	82.218	81.611	82.994	-2.261					60	28	3	0	0	0	0.027462	1	4846	4846		40.573	10.731	1	129910	+		12114	24091	9920	9932	13274	13274					0.0468204682290434
FPPLRWLD	8	Unmodified	_FPPLRWLD_					0	0	0			REV__ENST00000425211.5_1_17:18418869-18422825:-|nuORF	REV__ENST00000425211.5_1_17:18418869-18422825:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.7974243164062	2	522.287277	1042.56	1.7354	0.00090639	0.23982	0.00012526	1.9753	0.0010316	522.2869439802753	82.458	0.21487	82.458	82.307	82.522	0					6	4	2	0	0	0	0.028476	1	8525	8525		42.474	0	1	71389	+		12115	18889	9921	9933	13275	13275					0.04042368031082333
FPPLSTPNQ	9	Unmodified	_FPPLSTPNQ_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1;ENST00000569732.1_1_16:58585686-58592512:-|nuORF	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.30657958984375	2	500.758549	999.502546	2.7882	0.0013962	3.5567	0.0017811	6.3449	0.0031773	500.7601563945679	99.12	0.5668	99.12	98.838	99.405	0					33	13	3	0	0	0	0.027455	1	10930	10930		51.335	0	1	4508200			12116	3691	9922	9934	13276	13276					0.00277481034856919
FPPPFEIDGW	10	Unmodified	_FPPPFEIDGW_					0	0	0			REV__nc|ENSG00000131473|P53396-2|ACLY	REV__nc|ENSG00000131473|P53396-2|ACLY	MULTI-SECPEP	OvCa99_classI_Rep5	1	603.7703247070312	2	602.787307	1203.56006	0.82217	0.0004956	-3.5449	-0.0021368	-2.7228	-0.0016412	602.7847629385602	160.17	0.85349	160.17	159.91	160.76	0					25	16	2	0	0	0	0.026697	1	18828	18828		21.96	0	1	77122	+		12117	19017	9923	9935	13277	13277					-0.03357676759583228
FPPPQQQF	8	Unmodified	_FPPPQQQF_					0	0	0			REV__ENSG00000183486|ENST00000330714|MX2	REV__ENSG00000183486|ENST00000330714|MX2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.8062438964844	2	494.747985	987.481417	0.031644	1.5656E-05	-1.6124	-0.00079775	-1.5808	-0.00078209	494.7496060738447	64.026	0.67455	60.551	60.109	60.784	-3.475					20	13	2	0	0	0	0.028476	1	4515	4515		21.702	8.7432	1	35320	+		12118	22364	9924	9936	13278	13278					-0.012824842739973974
FPPPRVTL	8	Unmodified	_FPPPRVTL_					0	0	0		ENSG00000147676|ENST00000614891|MAL2	ENSG00000147676|ENST00000614891|MAL2	ENSG00000147676|ENST00000614891|MAL2	MULTI-MSMS	OvCa99_classI_Rep5	1	463.7776794433594	2	463.776545	925.538538	2.4664	0.0011439	-0.042074	-1.9513E-05	2.4243	0.0011244	463.77635692737135	120.99	1.4349	120.99	120.74	122.17	0					70	31	3	0	0	0	0.59148	1	13921	13921		65.803	0	1	1726200			12119	5371	9925	9937	13279	13279					0.07278983002368022
FPPQRALP	8	Unmodified	_FPPQRALP_					0	0	0		ENST00000416938.5_1_7:99704896-99705589:+|nuORF	ENST00000416938.5_1_7:99704896-99705589:+|nuORF	ENST00000416938.5_1_7:99704896-99705589:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	463.2704772949219	2	463.266345	924.518136	1.7806	0.0008249	0.24161	0.00011193	2.0222	0.00093683	463.2662510891291	134.93	0.80945	134.93	134.74	135.55	0					28	17	3	0	0	0	0.64377	2	15705	15705;15729		54.765	1.6851	1	223250			12120	11616	9926	9938	13280;13281	13280					0.05285812342560803
FPPREVHGI	9	Unmodified	_FPPREVHGI_					0	0	0		nc|ENSG00000139220|O75334-8|PPFIA2;nc|ENSG00000139220|O75334-7|PPFIA2;nc|ENSG00000139220|O75334-6|PPFIA2;nc|ENSG00000139220|O75334-5|PPFIA2;nc|ENSG00000139220|O75334-2|PPFIA2;nc|ENSG00000139220|O75334-4|PPFIA2;nc|ENSG00000139220|O75334-3|PPFIA2;ENSG00000139220|ENST00000549396|PPFIA2	nc|ENSG00000139220|O75334-8|PPFIA2	nc|ENSG00000139220|O75334-8|PPFIA2	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.2867431640625	2	526.287808	1050.56106	-0.23493	-0.00012364	-1.11	-0.00058419	-1.3449	-0.00070783	526.2871962273243	113.15	1.7214	111.71	111.06	112.78	-1.4461					69	34	3	0	0	0	0.27546	1	10493	10493		65.803	3.6958	1	203210			12121	4758	9927	9939	13282	13282					0.03780582400008825
FPPRPRGRRQK	11	Unmodified	_FPPRPRGRRQK_					0	0	0		ENST00000577691.5_1_17:18387201-18397610:+|nuORF;nc|ENSG00000168961|O00182-6|LGALS9;nc|ENSG00000170298|Q3B8N2-2|LGALS9B;ENSG00000168961|ENST00000395473|LGALS9;ENSG00000171916|ENST00000328114|LGALS9C;ENSG00000170298|ENST00000423676|LGALS9B	ENST00000577691.5_1_17:18387201-18397610:+|nuORF	ENST00000577691.5_1_17:18387201-18397610:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.75311279296875	3	465.612849	1393.81672	-1.049	-0.00048841	0.44749	0.00020836	-0.60146	-0.00028005	465.61286561053123	55.589	0.89244	52.785	52.432	53.324	-2.804					22	17	2	0	0	0	0.026344	1	3913	3913		14.086	0	1	9304.5			12122	6962	9928	9940	13283	13283					0.13556283307912054
FPPTVFDGH	9	Unmodified	_FPPTVFDGH_					0	0	0			REV__ENSG00000126246|ENST00000246532|IGFLR1	REV__ENSG00000126246|ENST00000246532|IGFLR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.765625	2	508.745442	1015.47633	-0.56892	-0.00028944	-0.36322	-0.00018479	-0.93215	-0.00047422	508.74508710908424	63.617	0.67229	60.142	59.916	60.588	-3.475					18	13	2	0	0	0	0.027462	1	4475	4475		33.516	12.569	1	71835	+		12123	18778	9929	9941	13284	13284					-0.03078788136622279
FPPVGAQPNKL	11	Unmodified	_FPPVGAQPNKL_					0	0	0			REV__nc|ENSG00000186174|Q86UU0-3|BCL9L	REV__nc|ENSG00000186174|Q86UU0-3|BCL9L	MULTI-MSMS	OvCa9_classI_Rep3	3	584.3306884765625	2	584.329673	1166.64479	-0.24335	-0.0001422	-0.38726	-0.00022629	-0.63061	-0.00036848	584.3293428556027	113.1	2.5611	112.02	111.76	114.32	-1.0753					117	50	3	0	0	0	0.14417	2	8298	8298;8322		87.696	13.722	1	646050	+		12124	22562	9930	9942	13285;13286	13285					0.06813693777030494
FPPVGAQPNKL	11	Unmodified	_FPPVGAQPNKL_					0	0	0			REV__nc|ENSG00000186174|Q86UU0-3|BCL9L	REV__nc|ENSG00000186174|Q86UU0-3|BCL9L	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.328369140625	2	584.329673	1166.64479	-0.20323	-0.00011875	-0.82135	-0.00047994	-1.0246	-0.00059869	584.3291428844931	113.42	3.0581	111.97	111.7	114.76	-1.4461					136	60	4	0	0	0	0.13159	1	10509	10509		90.37	10.657	1	862170	+		12125	22562	9930	9942	13287	13287					0.06813693777030494
FPPYGVLLI	9	Unmodified	_FPPYGVLLI_					0	0	0			REV__nc|ENSG00000145349|Q13557-4|CAMK2D	REV__nc|ENSG00000145349|Q13557-4|CAMK2D	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.2733459472656	2	509.802229	1017.5899	2.211	0.0011272	-1.026	-0.00052306	1.185	0.00060411	509.80141994084875	91.861	0.54903	91.861	91.711	92.26	0					22	12	3	0	0	0	0.027462	1	9944	9944		39.021	0	1	744830	+		12126	19960	9931	9943	13288	13288					0.08181306976428004
FPRGASSLFS	10	Unmodified	_FPRGASSLFS_					0	0	0		ENST00000465963.1_1_2:160005603-160007087:+|nuORF	ENST00000465963.1_1_2:160005603-160007087:+|nuORF	ENST00000465963.1_1_2:160005603-160007087:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	534.7749633789062	2	534.777274	1067.53999	-0.88787	-0.00047481	-2.9314	-0.0015676	-3.8193	-0.0020424	534.7755472389764	27.048	0.34962	27.048	26.892	27.241	0					15	6	3	0	0	0	0.67931	1	762	762		32.812	2.9709	1	158530			12127	12277	9932	9944	13289	13289					0.008925723004722386
FPRGLGGSVH	10	Unmodified	_FPRGLGGSVH_					0	0	0		ENST00000517813.1_1_8:142202910-142203504:+|nuORF	ENST00000517813.1_1_8:142202910-142203504:+|nuORF	ENST00000517813.1_1_8:142202910-142203504:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.8156127929688	2	513.777608	1025.54066	-0.44146	-0.00022681	1.4904	0.00076572	1.0489	0.00053891	513.7781247819578	74.662	0.36198	72.691	72.586	72.948	-1.9711					8	6	2	0	0	0	0.026681	1	6148	6148		52.937	13.684	1	17847			12128	13064	9933	9945	13290	13290					0.028914117401882322
FPRIKMRVLLW	11	Unmodified	_FPRIKMRVLLW_					0	0	0			REV__ENSG00000255393|ENST00000642343|OOSP4B	REV__ENSG00000255393|ENST00000642343|OOSP4B	MULTI-MSMS	OvCa9_classI_Rep3	3	486.9583740234375	3	486.96372	1457.86933	-7.2824	-0.0035463	-2.5468	-0.0012402	-9.8292	-0.0047865	486.9623381995862	161.08	3.4384	159.71	158.52	161.96	-1.3692					219	70	4	0	0	0	0.72472	1	14028	14028		19.263	8.6759	1	133400	+		12129	23527	9934	9946	13291	13291					0.15871105326527868
FPRLLDTKL	9	Unmodified	_FPRLLDTKL_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;nc|ENSG00000140694|O95453-3|PARN;nc|ENSG00000140694|O95453-4|PARN	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-MSMS	OvCa9_classI_Rep2	2	551.83251953125	2	551.834591	1101.65463	-0.25095	-0.00013848	-0.62207	-0.00034328	-0.87302	-0.00048176	551.8341547217644	100.17	1.3886	99.337	99.014	100.4	-0.83051					70	27	4	0	0	0	0.2422	2	9159	9159;9166		69.628	5.4204	1	447510			12130	4870	9935	9947	13292;13293	13292					0.10786881782405544
FPRLLDTKL	9	Unmodified	_FPRLLDTKL_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;nc|ENSG00000140694|O95453-3|PARN;nc|ENSG00000140694|O95453-4|PARN	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-MSMS	OvCa9_classI_Rep3	3	551.8331909179688	2	551.834591	1101.65463	-1.4468	-0.00079841	1.2828	0.00070792	-0.16398	-9.0489E-05	551.8352363148457	101.35	1.3104	99.741	99.446	100.76	-1.6053					67	24	4	0	0	0	0.35444	1	6918	6918		56.721	5.3856	1	510450			12131	4870	9935	9947	13294	13294					0.10786881782405544
FPRLLDTKL	9	Unmodified	_FPRLLDTKL_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;nc|ENSG00000140694|O95453-3|PARN;nc|ENSG00000140694|O95453-4|PARN	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.83447265625	2	551.834591	1101.65463	-0.20291	-0.00011197	-0.22458	-0.00012393	-0.42749	-0.0002359	551.8344006629158	102.04	1.2572	99.84	99.522	100.78	-2.1994					65	23	4	0	0	0	0.28934	1	9194	9194		64.207	0	1	458490			12132	4870	9935	9947	13295	13295					0.10786881782405544
FPRLPFYLLHM	11	Unmodified	_FPRLPFYLLHM_					0	0	0			REV__tr|A0A553SIN2|A0A553SIN2_NIACIRenaldipeptidaseOS=NialliacirculansOX=1397GN=CEQ21_15085PE=4SV=1	REV__tr|A0A553SIN2|A0A553SIN2_NIACIRenaldipeptidaseOS=NialliacirculansOX=1397GN=CEQ21_15085PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.74444580078125	3	478.596926	1432.76895	0.15938	7.628E-05	-0.85405	-0.00040875	-0.69467	-0.00033247	478.5965321420893	47.489	1.8819	44.381	43.775	45.657	-3.1077					64	36	2	0	0	0	0.026113	1	2633	2633		24.232	15.02	1	27495	+		12133	29910	9936	9948	13296	13296					0.06987448272866459
FPRLPFYLLHM	11	Unmodified	_FPRLPFYLLHM_					0	0	0			REV__tr|A0A553SIN2|A0A553SIN2_NIACIRenaldipeptidaseOS=NialliacirculansOX=1397GN=CEQ21_15085PE=4SV=1	REV__tr|A0A553SIN2|A0A553SIN2_NIACIRenaldipeptidaseOS=NialliacirculansOX=1397GN=CEQ21_15085PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	478.596926	1432.76895	-0.74456	-0.00035634	0.11214	5.3672E-05	-0.63241	-0.00030267	478.59689966824277	47.442	1.2876	44.732	44.043	45.331	-2.7097	0.17555	0.00099414	NaN	18.531	34	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13123	+		12134	29910	9936	9948							0.06987448272866459
FPRRCTWLY	9	Unmodified	_FPRRCTWLY_					0	0	0		ENST00000495648.3_1_2:39499422-39505556:-|nuORF;nc|ENSG00000011566|Q8IVH8-3|MAP4K3;nc|ENSG00000011566|Q8IVH8-2|MAP4K3;ENSG00000011566|ENST00000263881|MAP4K3	ENST00000495648.3_1_2:39499422-39505556:-|nuORF	ENST00000495648.3_1_2:39499422-39505556:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	621.341552734375	2	621.316043	1240.61753	1.2247	0.00076095	2.5616	0.0015916	3.7863	0.0023525	621.317697096251	130.29	0.71349	130.29	129.87	130.58	0					19	14	2	0	0	0	0.027455	1	15132	15132		60.972	9.6365	1	81161			12135	969	9937	9949	13297	13297					0.006848869650184497
FPRRRQLYT	9	Unmodified	_FPRRRQLYT_					0	0	0		ENST00000566774.1_1_16:68264768-68266536:-|nuORF	ENST00000566774.1_1_16:68264768-68266536:-|nuORF	ENST00000566774.1_1_16:68264768-68266536:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	619.8057861328125	2	618.851638	1235.68872	-4.1032	-0.0025393	-1.7498	-0.0010829	-5.853	-0.0036222	618.8499083274335	154.04	0.1525	152.59	152.49	152.64	-1.4517					6	4	2	0	0	0	0.027462	1	15244	15244		7.6903	0	1	4881.1			12136	13851	9938	9950	13298	13298					0.08030722994021744
FPRVYGVSL	9	Unmodified	_FPRVYGVSL_					0	0	0		ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MSMS	OvCa9_classI_Rep3	3	519.2928466796875	2	519.292559	1036.57057	0.94828	0.00049244	-0.81658	-0.00042404	0.1317	6.8392E-05	519.2920116304507	110.54	1.3213	109.39	109.14	110.46	-1.1444					44	25	2	0	0	0	0.33652	1	7988	7988		58.782	10.866	1	107040			12137	2006	9939	9951	13299	13299					0.053743506855198575
FPSFLPDAI	9	Unmodified	_FPSFLPDAI_					0	0	0		ENST00000392723.5_2_1:151375515-151375596:-|nuORF	ENST00000392723.5_2_1:151375515-151375596:-|nuORF	ENST00000392723.5_2_1:151375515-151375596:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.7648010253906	2	503.765843	1005.51713	-0.75807	-0.00038189	-3.1905	-0.0016073	-3.9486	-0.0019892	503.7641234658958	94.306	1.4911	91.838	91.571	93.062	-2.4685					76	29	4	0	0	0	0.29717	1	8247	8247		63.306	1.1989	1	1024600			12138	11234	9940	9952	13300	13300					0.014595531829854735
FPSHGWVKE	9	Unmodified	_FPSHGWVKE_					0	0	0			REV__ENST00000336798.11_2_1:31344725-31344983:-|nuORF	REV__ENST00000336798.11_2_1:31344725-31344983:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	543.7939453125	2	543.771991	1085.52943	0.28633	0.0001557	3.6614	0.001991	3.9477	0.0021467	544.2771507353305	107.69	0.26508	106.42	106.25	106.52	-1.267					6	4	2	0	0	0	0.027462	1	7654	7654		37.159	16.677	1	10537	+		12139	24590	9941	9953	13301	13301					-0.009914103539585994
FPSILVPDA	9	Unmodified	_FPSILVPDA_					0	0	0		nc|ENSG00000119844|Q6ULP2-7|AFTPH;ENST00000498706.5_1_2:64778608-64806757:+|nuORF;nc|ENSG00000119844|Q6ULP2-8|AFTPH;nc|ENSG00000119844|Q6ULP2-6|AFTPH;ENSG00000119844|ENST00000409933|AFTPH;nc|ENSG00000119844|Q6ULP2-9|AFTPH	nc|ENSG00000119844|Q6ULP2-7|AFTPH	nc|ENSG00000119844|Q6ULP2-7|AFTPH	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2796936035156	2	479.765843	957.517133	-1.3283	-0.00063726	-3.0755	-0.0014755	-4.4038	-0.0021128	479.7641199650058	64.053	0.47947	64.053	63.854	64.334	0					24	11	3	0	0	0	0.027462	1	5774	5774		30.504	0	1	844320			12140	3398	9942	9954	13302	13302					0.03667553182992833
FPSLAPASPL	10	Unmodified	_FPSLAPASPL_					0	0	0		tr|A0A553SK91|A0A553SK91_NIACI3-isopropylmalatedehydrogenaseOS=NialliacirculansOX=1397GN=leuBPE=3SV=1	tr|A0A553SK91|A0A553SK91_NIACI3-isopropylmalatedehydrogenaseOS=NialliacirculansOX=1397GN=leuBPE=3SV=1	tr|A0A553SK91|A0A553SK91_NIACI3-isopropylmalatedehydrogenaseOS=NialliacirculansOX=1397GN=leuBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.2619323730469	2	500.279118	998.543683	2.3153	0.0011583	-2.9397	-0.0014707	-0.62434	-0.00031234	500.2772128182085	86.144	0.47736	86.144	85.994	86.471	0					20	11	3	0	0	0	0.026915	1	9091	9091		35.618	6.4687	1	323660			12141	33592	9943	9955	13303	13303					0.04435242074339385
FPSLRALIA	9	Unmodified	_FPSLRALIA_					0	0	0		ENSG00000204394|ENST00000375663|VARS1;VARS|p.Q197Vfs*11|1|0.38|ENSG00000204394|chr6:31792830-31792831|-/CGGACACA|frameshift_variant;VARS|p.V773Dfs*4|1|0.04|ENSG00000204394|chr6:31781876-31781877|-/T|frameshift_variant	ENSG00000204394|ENST00000375663|VARS1	ENSG00000204394|ENST00000375663|VARS1	MULTI-MSMS	OvCa9_classI_Rep2	2	494.3023986816406	2	494.302927	986.591301	0.81214	0.00040144	-1.0562	-0.00052209	-0.24407	-0.00012065	494.30223351150516	125.12	0.64149	124.89	124.47	125.11	-0.2359					24	12	3	0	0	0	0.51865	1	12186	12186		40.778	0.20554	1	79962			12142	8980	9944	9956	13304	13304					0.09746941065168357
FPSLREYND	9	Unmodified	_FPSLREYND_					0	0	0		ENST00000556764.5_1_14:61201502-61275155:+|nuORF;nc|ENSG00000020426|P51948-2|MNAT1;ENSG00000020426|ENST00000261245|MNAT1	ENST00000556764.5_1_14:61201502-61275155:+|nuORF	ENST00000556764.5_1_14:61201502-61275155:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	570.8217163085938	2	570.769645	1139.52474	-0.30186	-0.00017229	2.7984	0.0015972	2.4965	0.0014249	571.2726898558465	80.591	1.2999	78.896	78.37	79.67	-1.6951					41	25	2	0	0	0	0.027462	1	6829	6829		34.173	0	1	45042			12143	1023	9945	9957	13305	13305					-0.03944339287386356
FPSMGNNKYI	10	Unmodified	_FPSMGNNKYI_					0	0	0			REV__tr|A0A7D6VR41|A0A7D6VR41_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05415PE=4SV=1	REV__tr|A0A7D6VR41|A0A7D6VR41_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05415PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.3060302734375	2	585.784241	1169.55393	1.3452	0.000788	0.51982	0.0003045	1.865	0.0010925	585.7842119138473	107.07	0.54922	107.07	106.85	107.4	0					17	12	2	0	0	0	0.026891	1	12047	12047		39.253	7.723	1	400200	+		12144	31384	9946	9958	13306	13306					-0.02406518262728241
FPSVGHYKN	9	Unmodified	_FPSVGHYKN_					0	0	0			REV__tr|A0A7D6VXX9|A0A7D6VXX9_9CLOT1-deoxy-D-xylulose-5-phosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=dxsPE=3SV=1	REV__tr|A0A7D6VXX9|A0A7D6VXX9_9CLOT1-deoxy-D-xylulose-5-phosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=dxsPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	523.8150634765625	2	524.764166	1047.51378	0.92917	0.0004876	-3.5403	-0.0018578	-2.6111	-0.0013702	524.7632845887359	122.77	0.89258	121.74	121.37	122.27	-1.0286					46	16	4	0	0	0	0.027448	1	9479	9479		35.618	0	1	36243	+		12145	31796	9947	9959	13307	13307					-0.008076968709929133
FPSWLVVSRL	10	Unmodified	_FPSWLVVSRL_					0	0	0		ENSG00000189362|ENST00000409150|NEMP2	ENSG00000189362|ENST00000409150|NEMP2	ENSG00000189362|ENST00000409150|NEMP2	MULTI-MSMS	OvCa9_classI_Rep2	2	401.90008544921875	3	401.901003	1202.68118	0.43726	0.00017574	-3.4272	-0.0013774	-2.9899	-0.0012017	401.8994230610732	50.361	1.934	47.567	46.686	48.62	-2.794					100	38	5	0	0	0	0.49595	1	3253	3253		54.722	1.6334	1	232540			12146	8553	9948	9960	13308	13308					0.08794570673762792
FPSYESPPL	9	Unmodified	_FPSYESPPL_					0	0	0		ENST00000557893.5_1_15:45440187-45444854:+|nuORF	ENST00000557893.5_1_15:45440187-45444854:+|nuORF	ENST00000557893.5_1_15:45440187-45444854:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.8125610351562	2	518.752933	1035.49131	-0.87452	-0.00045366	-3.0223	-0.0015678	-3.8968	-0.0020215	518.7512056230553	99.355	0.62258	97.029	96.743	97.366	-2.3253					18	11	2	0	0	0	0.027417	1	8825	8825		55.504	23.974	1	28310			12147	13690	9949	9961	13309	13309					-0.025013410592691798
FPTLDHSLE	9	Unmodified	_FPTLDHSLE_					0	0	0		ENST00000520450.5_1_5:169483451-169483970:+|nuORF	ENST00000520450.5_1_5:169483451-169483970:+|nuORF	ENST00000520450.5_1_5:169483451-169483970:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.310302734375	2	529.761289	1057.50803	-1.1964	-0.00063383	-1.4074	-0.00074557	-2.6038	-0.0013794	529.7591222312568	106.02	0.61215	104	103.7	104.31	-2.0161					15	11	2	0	0	0	0.027456	1	9650	9650		47.916	12.715	1	7068.9			12148	13106	9950	9962	13310	13310					-0.01842840173321747
FPTPGFLSFS	10	Unmodified	_FPTPGFLSFS_					0	0	0		ENST00000358039.8_1_1:113161745-113161946:-|nuORF	ENST00000358039.8_1_1:113161745-113161946:-|nuORF	ENST00000358039.8_1_1:113161745-113161946:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	550.2781982421875	2	550.276575	1098.5386	1.3758	0.00075705	3.9069	0.0021499	5.2827	0.0029069	550.2786540738983	148.35	1.2777	148.35	147.98	149.26	0					47	25	3	0	0	0	0.42962	1	17348	17348		64.207	3.2353	1	264850			12149	10727	9951	9963	13311	13311					-0.0067306178827948315
FPTPTTPLT	9	Unmodified	_FPTPTTPLT_					0	0	0		nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;WDR59-UBAP2L|1|fusion;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;WDR59-UBAP2L|2|fusion	nc|ENSG00000143569|Q14157-3|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.7806091308594	2	487.7633	973.512048	-0.97372	-0.00047495	-2.8952	-0.0014122	-3.8689	-0.0018871	487.7617240581023	73.2	0.87089	69.804	69.543	70.414	-3.3961					40	17	3	0	0	0	0.027456	1	5702	5702		30.504	0	1	150630			12150	5073	9952	9964	13312	13312					0.024232493203840022
FPVEFHQNR	9	Unmodified	_FPVEFHQNR_					0	0	0			REV__ENSG00000109111|ENST00000314616|SUPT6H	REV__ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	OvCa9_classI_Rep4_	4	587.2957763671875	2	587.293622	1172.57269	-1.8305	-0.001075	4.3743	0.002569	2.5439	0.001494	587.2961004815837	119.51	2.07	118.17	117.83	119.9	-1.3444					114	39	5	0	0	0	0.59983	1	11290	11290		31.955	5.2619	1	737630	+		12151	17918	9953	9965	13313	13313					-0.006692205766739789
FPVETKLGK	9	Unmodified	_FPVETKLGK_					0	0	0			REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|109|2|sense	REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|109|2|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.8048400878906	2	509.800217	1017.58588	3.3773	0.0017218	3.7232	0.0018981	7.1005	0.0036199	509.8019531374822	133.05	3.6208	131.53	130.01	133.63	-1.5202					129	72	3	0	0	0	0.53483	1	12813	12813		39.253	6.4404	1	54066	+		12152	28462	9954	9966	13314	13314					0.07779217482709555
FPVFCVAFVTL	11	Unmodified	_FPVFCVAFVTL_					0	0	0			REV__ENSG00000186912|ENST00000374519|P2RY4	REV__ENSG00000186912|ENST00000374519|P2RY4	MULTI-SECPEP	OvCa99_classI_Rep5	1	622.3062133789062	2	621.833203	1241.65185	0.93845	0.00058356	0.61304	0.00038121	1.5515	0.00096477	621.8331511781668	144.23	0.54332	144.23	143.86	144.4	0					17	10	2	0	0	0	0.025329	1	16855	16855		27.882	15.675	1	57616	+		12153	22621	9955	9967	13315	13315					0.0406929033324559
FPVFLNTKV	9	Unmodified	_FPVFLNTKV_					0	0	0		sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1;sp|F5HDK1|US27_HCMVMEnvelopeglycoproteinUS27OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US27PE=3SV=1	sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1	sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	532.809326171875	2	532.810585	1063.60662	-1.6207	-0.00086354	-2.8876	-0.0015386	-4.5084	-0.0024021	532.809075214856	76.341	2.1952	74.487	74.096	76.292	-1.854					137	40	4	0	0	0	0.18193	1	6345	6345		79.451	1.1872	1	3797500			12154	32863	9956	9968	13316	13316					0.07735807862377442
FPVGIIQTQ	9	Unmodified	_FPVGIIQTQ_					0	0	0		ENST00000307968.11_1_5:131007642-131007714:-|nuORF	ENST00000307968.11_1_5:131007642-131007714:-|nuORF	ENST00000307968.11_1_5:131007642-131007714:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.7602844238281	2	501.784567	1001.55458	-0.80213	-0.00040249	-1.7979	-0.00090215	-2.6	-0.0013046	501.78347741107285	65.536	0.35609	65.536	65.309	65.665	0					16	8	3	0	0	0	0.027456	1	6022	6022		38.806	0	1	431140			12155	10261	9957	9969	13317	13317					0.05386644448606148
FPVGLSKLN	9	Unmodified	_FPVGLSKLN_					0	0	0			REV__tr|A0A7D6VQU9|A0A7D6VQU9_9CLOTL-aspartateoxidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16635PE=3SV=1	REV__tr|A0A7D6VQU9|A0A7D6VQU9_9CLOTL-aspartateoxidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16635PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.2596435546875	2	487.78711	973.559667	2.3474	0.001145	-4.3827	-0.0021378	-2.0353	-0.00099281	487.7847407613254	80.456	0.71272	80.456	80.031	80.744	0					37	16	4	0	0	0	0.027462	1	8255	8255		37.159	0	1	670870	+		12156	31359	9958	9970	13318	13318					0.07182948311242399
FPVIYASAI	9	Unmodified	_FPVIYASAI_					0	0	0		tr|A0A553SPC4|A0A553SPC4_NIACILargeribosomalsubunitassemblyfactorBipAOS=NialliacirculansOX=1397GN=typAPE=3SV=1	tr|A0A553SPC4|A0A553SPC4_NIACILargeribosomalsubunitassemblyfactorBipAOS=NialliacirculansOX=1397GN=typAPE=3SV=1	tr|A0A553SPC4|A0A553SPC4_NIACILargeribosomalsubunitassemblyfactorBipAOS=NialliacirculansOX=1397GN=typAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	490.7748107910156	2	490.776211	979.537869	-1.1941	-0.00058601	-3.2666	-0.0016032	-4.4607	-0.0021892	490.77442955585013	91.231	1.3058	89.207	88.829	90.135	-2.0241					71	25	4	0	0	0	0.17908	1	5713	5713		79.939	3.0926	1	1112000			12157	34028	9959	9971	13319	13319					0.04728143562670084
FPVIYASAI	9	Unmodified	_FPVIYASAI_					0	0	0		tr|A0A553SPC4|A0A553SPC4_NIACILargeribosomalsubunitassemblyfactorBipAOS=NialliacirculansOX=1397GN=typAPE=3SV=1	tr|A0A553SPC4|A0A553SPC4_NIACILargeribosomalsubunitassemblyfactorBipAOS=NialliacirculansOX=1397GN=typAPE=3SV=1	tr|A0A553SPC4|A0A553SPC4_NIACILargeribosomalsubunitassemblyfactorBipAOS=NialliacirculansOX=1397GN=typAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.7751770019531	2	490.776211	979.537869	-0.32966	-0.00016179	-3.824	-0.0018767	-4.1537	-0.0020385	490.77419441775845	91.729	2.1166	89.186	88.811	90.928	-2.5425					87	41	5	0	0	0	0.32337	1	7982	7982		60.294	2.4827	1	882540			12158	34028	9959	9971	13320	13320					0.04728143562670084
FPVLFALIN	9	Unmodified	_FPVLFALIN_					0	0	0			REV__nc|ENSG00000093183|Q9BRL7-2|SEC22C	REV__nc|ENSG00000093183|Q9BRL7-2|SEC22C	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3037109375	2	517.307678	1032.6008	0.50544	0.00026147	-4.4683	-0.0023115	-3.9629	-0.00205	517.3051776406942	124.31	0.98633	124.07	123.68	124.67	-0.23193					45	19	3	0	0	0	0.52083	1	12089	12089		40.573	1.3198	1	148560	+		12159	17276	9960	9972	13321	13321					0.08580709350712823
FPVLIHFL	8	Unmodified	_FPVLIHFL_					0	0	0		ENST00000064778.8_1_11:73115379-73115817:-|nuORF	ENST00000064778.8_1_11:73115379-73115817:-|nuORF	ENST00000064778.8_1_11:73115379-73115817:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.30517578125	2	493.297114	984.579674	0.39957	0.0001971	-2.0343	-0.0010035	-1.6347	-0.00080641	493.2965964551976	115.84	0.34601	114.45	114.27	114.61	-1.3977					8	6	2	0	0	0	0.028476	1	10776	10776		24.504	0	1	6256.9			12160	9632	9961	9973	13322	13322					0.08676744041838447
FPVNGRKV	8	Unmodified	_FPVNGRKV_					0	0	0		tr|A0A553STK2|A0A553STK2_NIACIFour-carbonacidsugarkinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05065PE=3SV=1	tr|A0A553STK2|A0A553STK2_NIACIFour-carbonacidsugarkinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05065PE=3SV=1	tr|A0A553STK2|A0A553STK2_NIACIFour-carbonacidsugarkinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05065PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	459.2566833496094	2	458.771794	915.529036	-0.98235	-0.00045067	-0.81371	-0.00037331	-1.7961	-0.00082398	458.77068686077183	55.577	0.30233	52.282	52.11	52.412	-3.2944					7	5	2	0	0	0	0.028476	1	3521	3521		19.36	0	1	10637			12161	34498	9962	9974	13323	13323					0.06789214716854985
FPVPEVVGV	9	Unmodified	_FPVPEVVGV_					0	0	0		tr|A0A553SMY7|A0A553SMY7_NIACIAconitatehydrataseOS=NialliacirculansOX=1397GN=acnAPE=3SV=1	tr|A0A553SMY7|A0A553SMY7_NIACIAconitatehydrataseOS=NialliacirculansOX=1397GN=acnAPE=3SV=1	tr|A0A553SMY7|A0A553SMY7_NIACIAconitatehydrataseOS=NialliacirculansOX=1397GN=acnAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.7311096191406	2	471.768386	941.522219	-0.24017	-0.00011331	-4.3481	-0.0020513	-4.5882	-0.0021646	471.7660231707566	54.942	0.71916	51.695	51.336	52.055	-3.2474					23	13	2	0	0	0	0.027425	1	3441	3441		60.294	2.4827	1	92840			12162	33886	9963	9975	13324	13324					0.049118570456244015
FPVPPREVI	9	Unmodified	_FPVPPREVI_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-SECPEP	OvCa9_classI_Rep2	2	527.2820434570312	2	527.30821	1052.60187	-1.0147	-0.00053506	-3.8035	-0.0020056	-4.8182	-0.0025407	527.3059656002989	57.145	0.59468	54.353	54.03	54.625	-2.792					21	11	3	0	0	0	0.027461	1	4041	4041		49.442	21.559	1	18388			12163	8615	9964	9976	13325	13325					0.07766923719623264
FPVPPREVI	9	Unmodified	_FPVPPREVI_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	527.30821	1052.60187	-0.72429	-0.00038193	-3.2302	-0.0017033	-3.9545	-0.0020853	527.3062379551587	57.814	0.66007	54.469	54.189	54.849	-3.3449	0.058295	0.0001887	NaN	49.442	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49130			12164	8615	9964	9976							0.07766923719623264
FPVPSQWIK	9	Unmodified	_FPVPSQWIK_					0	0	0		nc|ENSG00000243244|Q9Y6Q2-3|STON1;nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;ENSG00000243244|ENST00000404752|STON1	nc|ENSG00000243244|Q9Y6Q2-3|STON1	nc|ENSG00000243244|Q9Y6Q2-3|STON1	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.3077392578125	2	551.30821	1100.60187	-1.1931	-0.00065776	-0.058195	-3.2083E-05	-1.2513	-0.00068985	551.308035303464	48.803	1.0923	45.696	45.192	46.285	-3.1077					52	20	4	0	0	0	0.50149	1	2717	2717		42.396	0	1	164020			12165	1397	9965	9977	13326	13326					0.05558923719604536
FPVPSQWIK	9	Unmodified	_FPVPSQWIK_					0	0	0		nc|ENSG00000243244|Q9Y6Q2-3|STON1;nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;ENSG00000243244|ENST00000404752|STON1	nc|ENSG00000243244|Q9Y6Q2-3|STON1	nc|ENSG00000243244|Q9Y6Q2-3|STON1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	551.30821	1100.60187	-0.16008	-8.8254E-05	-1.0963	-0.00060438	-1.2563	-0.00069263	551.3075560677237	48.38	1.0455	45.654	45.215	46.26	-2.7265	-0.020859	-0.00078115	NaN	42.396	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55813			12166	1397	9965	9977							0.05558923719604536
FPVQLVSLV	9	Unmodified	_FPVQLVSLV_					0	0	0			REV__nc|ENSG00000036828|P41180-2|CASR	REV__nc|ENSG00000036828|P41180-2|CASR	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.30340576171875	2	501.305136	1000.59572	-1.3141	-0.00065878	-3.8156	-0.0019128	-5.1298	-0.0025716	501.3030422318759	100.83	2.3031	98.56	97.726	100.03	-2.2665					81	45	4	0	0	0	0.21231	1	9033	9033		74.255	5.4682	1	392290	+		12167	28710	9966	9978	13327	13327					0.09544405488088614
FPVSGGDGIPE	11	Unmodified	_FPVSGGDGIPE_					0	0	0		ENST00000511162.1_1_5:70196523-70197640:+|nuORF;ENST00000317633.13_2_5:70196496-70197687:+|nuORF	ENST00000511162.1_1_5:70196523-70197640:+|nuORF	ENST00000511162.1_1_5:70196523-70197640:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.3037109375	2	537.758746	1073.50294	-0.53132	-0.00028572	-3.3213	-0.0017861	-3.8526	-0.0020718	537.7567083371941	112.74	0.64144	111.23	111	111.64	-1.5111					18	12	2	0	0	0	0.02538	1	10458	10458		37.812	9.9293	1	18018			12168	10357	9967	9979	13328	13328					-0.030871440359533153
FPVSGGDGIPE	11	Unmodified	_FPVSGGDGIPE_					0	0	0		ENST00000511162.1_1_5:70196523-70197640:+|nuORF;ENST00000317633.13_2_5:70196496-70197687:+|nuORF	ENST00000511162.1_1_5:70196523-70197640:+|nuORF	ENST00000511162.1_1_5:70196523-70197640:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	537.758746	1073.50294	-0.40472	-0.00021764	-4.5677	-0.0024563	-4.9724	-0.002674	537.7565125695845	111.69	0.59027	111.55	111.18	111.77	-0.13961	0.15812	-0.00074741	NaN	29.17	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13524			12169	10357	9967	9979							-0.030871440359533153
FPVVILVKP	9	Unmodified	_FPVVILVKP_					0	0	0			REV__ENSG00000117597|ENST00000491415|UTP25	REV__ENSG00000117597|ENST00000491415|UTP25	MULTI-MSMS	OvCa9_classI_Rep2	2	506.3310852050781	2	506.333696	1010.65284	-0.48567	-0.00024591	-3.4639	-0.0017539	-3.9496	-0.0019998	506.33188661899624	122.71	0.88946	122.49	122.22	123.11	-0.21803					45	17	3	0	0	0	0.25214	1	11923	11923		68.485	15.548	1	120630	+		12170	18360	9968	9980	13329	13329					0.14793872764482785
FPVYHSGV	8	Unmodified	_FPVYHSGV_					0	0	0		tr|A0A7D6VSC4|A0A7D6VSC4_9CLOT4Fe-4SbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05825PE=4SV=1	tr|A0A7D6VSC4|A0A7D6VSC4_9CLOT4Fe-4SbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05825PE=4SV=1	tr|A0A7D6VSC4|A0A7D6VSC4_9CLOT4Fe-4SbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05825PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	453.7623596191406	2	453.229428	904.444303	0.14074	6.3786E-05	0.27522	0.00012474	0.41595	0.00018852	453.22963795488425	51.33	0.59137	51.33	51.078	51.669	0					24	13	3	0	0	0	0.028476	1	3965	3965		33.516	18.651	1	170100			12171	35014	9969	9981	13330	13330					-0.011741558197627455
FPWPFLAP	8	Unmodified	_FPWPFLAP_					0	0	0		ENST00000379938.6_3_6:7250695-7251052:+|nuORF	ENST00000379938.6_3_6:7250695-7251052:+|nuORF	ENST00000379938.6_3_6:7250695-7251052:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.28863525390625	2	487.760364	973.506175	-1.4064	-0.00068599	-3.2751	-0.0015975	-4.6815	-0.0022835	487.7588088329083	49.052	0.88387	45.911	45.468	46.352	-3.1416					27	16	2	0	0	0	0.028476	1	2725	2725		54.895	11.269	1	47044			12172	11136	9970	9982	13331	13331					0.018361955993555057
FPWPPTLEL	9	Unmodified	_FPWPPTLEL_					0	0	0		L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|257|3|anti-sense	L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|257|3|anti-sense	L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|257|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.8240966796875	2	550.294768	1098.57498	0.79599	0.00043803	-3.4853	-0.0019179	-2.6893	-0.0014799	550.2931743690697	154.13	0.78668	154.13	153.78	154.57	0					32	15	3	0	0	0	0.027433	1	18085	18085		68.485	15.133	1	54039			12173	14577	9971	9983	13332	13332					0.029638151084100173
FPWQVFTN	8	Unmodified	_FPWQVFTN_					0	0	0		nc|ENSG00000159403|P00736|C1R;ENSG00000159403|ENST00000647956|C1R	nc|ENSG00000159403|P00736|C1R	nc|ENSG00000159403|P00736|C1R	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.8204345703125	2	519.75581	1037.49707	0.47724	0.00024805	3.4462	0.0017912	3.9235	0.0020392	519.7574682902377	140.75	1.0876	139.26	138.91	139.99	-1.4952					47	20	4	0	0	0	0.028476	1	13701	13701		42.396	25.923	1	55508			12174	6010	9972	9984	13333	13333					-0.02018197756956397
FPWQVFTN	8	Unmodified	_FPWQVFTN_					0	0	0		nc|ENSG00000159403|P00736|C1R;ENSG00000159403|ENST00000647956|C1R	nc|ENSG00000159403|P00736|C1R	nc|ENSG00000159403|P00736|C1R	MULTI-MATCH	OvCa9_classI_Rep2	2		2	519.75581	1037.49707	-0.76552	-0.00039789	4.9097	0.0025519	4.1442	0.002154	519.7581626418273	139.75	0.68828	139.53	139.16	139.84	-0.22696	0.16167	0.00058752	NaN	34.173	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15026			12175	6010	9972	9984							-0.02018197756956397
FPWQVFTN	8	Unmodified	_FPWQVFTN_					0	0	0		nc|ENSG00000159403|P00736|C1R;ENSG00000159403|ENST00000647956|C1R	nc|ENSG00000159403|P00736|C1R	nc|ENSG00000159403|P00736|C1R	MULTI-MATCH	OvCa9_classI_Rep3	3		2	519.75581	1037.49707	-1.7926	-0.00093174	5.6432	0.0029331	3.8506	0.0020014	519.7584696016725	140.34	0.73837	139.31	138.99	139.73	-1.0339	-0.055738	0.00135	NaN	34.173	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25933			12176	6010	9972	9984							-0.02018197756956397
FPYALAFM	8	Unmodified	_FPYALAFM_					0	0	0		ENSG00000164134|ENST00000296543|NAA15	ENSG00000164134|ENST00000296543|NAA15	ENSG00000164134|ENST00000296543|NAA15	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.29315185546875	2	480.238407	958.462261	0.30739	0.00014762	-4.1846	-0.0020096	-3.8772	-0.001862	480.2380885578873	60.665	1.3739	57.235	56.898	58.272	-3.43					38	27	2	0	0	0	0.028476	1	4235	4235		33.493	4.3434	1	79826			12177	6419	9973	9985	13334	13334					-0.018631568892715222
FPYVLHIV	8	Unmodified	_FPYVLHIV_					0	0	0		ENST00000317506.7_1_16:67758723-67758927:-|nuORF	ENST00000317506.7_1_16:67758723-67758927:-|nuORF	ENST00000317506.7_1_16:67758723-67758927:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	494.28533935546875	2	494.286746	986.558939	1.7094	0.00084493	-3.8849	-0.0019202	-2.1755	-0.0010753	494.28469336869875	122.5	0.4119	122.5	122.31	122.72	0					12	8	2	0	0	0	0.7363	1	14111	14111		33.493	0.68056	1	96759			12178	10355	9974	9986	13335	13335					0.06512153662185938
FQAAWVSSQEL	11	Unmodified	_FQAAWVSSQEL_					0	0	0		nc|ENSG00000211813|A0A0B4J273|TRAV34	nc|ENSG00000211813|A0A0B4J273|TRAV34	nc|ENSG00000211813|A0A0B4J273|TRAV34	MULTI-SECPEP	OvCa99_classI_Rep5	1	633.0259399414062	2	633.311677	1264.6088	1.4142	0.00089563	-2.789	-0.0017663	-1.3748	-0.00087071	633.3100823833419	142.85	1.0805	142.85	142.23	143.32	0					23	21	2	0	0	0	0.025378	1	16635	16635		29.551	19.447	1	55245			12179	15297	9975	9987	13336	13336					-0.012918081904672363
FQAHPHELL	9	Unmodified	_FQAHPHELL_					0	0	0			REV__ENSG00000164853|ENST00000316333|UNCX	REV__ENSG00000164853|ENST00000316333|UNCX	MULTI-MSMS	OvCa9_classI_Rep2	2	546.285400390625	2	546.285266	1090.55598	-0.56606	-0.00030923	2.3365	0.0012764	1.7704	0.00096715	546.2863258210423	137.01	1.2304	136.78	136.4	137.63	-0.22697					54	25	3	0	0	0	0.62352	1	13671	13671		29.15	2.4566	1	145390	+		12180	21026	9976	9988	13337	13337					0.0143227853739063
FQAIIQYTL	9	Unmodified	_FQAIIQYTL_					0	0	0		ENST00000473040.6_1_4:128905516-128956965:+|nuORF	ENST00000473040.6_1_4:128905516-128956965:+|nuORF	ENST00000473040.6_1_4:128905516-128956965:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	548.8062133789062	2	548.8055	1095.59645	1.8168	0.00099707	0.034074	1.87E-05	1.8509	0.0010158	548.8052379084394	137.7	0.95464	137.7	137.45	138.4	0					44	20	3	0	0	0	0.2422	1	16058	16058		69.628	0.8408	1	380180			12181	12403	9977	9989	13338	13338					0.052472001371370425
FQAPTAKEM	9	Unmodified	_FQAPTAKEM_					0	0	0		ENST00000418251.6_1_2:113943320-113958989:+|nuORF;ENST00000409656.5_1_2:113943320-113958989:+|nuORF;PSD4|p.I884Mfs*131|1|0.06|ENSG00000125637|chr2:113198767-113198767|C/-|frameshift_variant;nc|ENSG00000125637|Q8NDX1-2|PSD4;ENSG00000125637|ENST00000245796|PSD4	ENST00000418251.6_1_2:113943320-113958989:+|nuORF	ENST00000418251.6_1_2:113943320-113958989:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	511.7544860839844	2	511.75241	1021.49027	-0.99977	-0.00051163	0.52917	0.00027081	-0.47059	-0.00024083	511.7524662906306	65.853	0.90516	65.853	65.586	66.491	0					47	22	4	0	0	0	0.033166	1	6078	6078		132.76	34.128	1	3025100			12182	3719	9978	9990	13339	13339					-0.01961878699830777
FQDFKRLLY	9	Unmodified	_FQDFKRLLY_					0	0	0		ENSG00000136286|ENST00000258787|MYO1G;MYO1G|p.N590Kfs*17|1|0.22|ENSG00000136286|chr7:44967617-44967618|-/C|frameshift_variant;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENST00000483585.5_1_7:45006053-45011824:-|nuORF;MYO1G|p.L539H|1|0.23|ENSG00000136286|chr7:44967917-44967917|A/T|missense_variant;ENST00000463516.5_1_7:45006053-45008547:-|nuORF	ENSG00000136286|ENST00000258787|MYO1G	ENSG00000136286|ENST00000258787|MYO1G	MULTI-MSMS	OvCa99_classI_Rep5	1	615.33984375	2	615.337498	1228.66044	2.543	0.0015648	-0.57131	-0.00035155	1.9717	0.0012132	615.3370859030163	94.497	1.0201	94.497	94.264	95.284	0					58	23	4	0	0	0	0.27001	1	10307	10307		66.429	4.3219	1	8051400			12183	4482	9979	9991	13340	13340					0.055259802941009184
FQDVLTDIFI	10	Unmodified	_FQDVLTDIFI_					0	0	0		tr|A0A7D6VQZ7|A0A7D6VQZ7_9CLOTFerrousirontransportproteinBOS=ClostridiumintestinaleOX=36845GN=feoBPE=3SV=1	tr|A0A7D6VQZ7|A0A7D6VQZ7_9CLOTFerrousirontransportproteinBOS=ClostridiumintestinaleOX=36845GN=feoBPE=3SV=1	tr|A0A7D6VQZ7|A0A7D6VQZ7_9CLOTFerrousirontransportproteinBOS=ClostridiumintestinaleOX=36845GN=feoBPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	404.2196044921875	3	404.216657	1209.62814	3.2514	0.0013143	2.6809	0.0010837	5.9324	0.002398	404.2178648039015	90.477	4.4615	90.477	90.186	94.648	0					287	107	5	0	0	0	0.62299	1	9991	9991		39.253	1.4413	1	88373000			12184	34883	9980	9992	13341	13341					0.03171148100409482
FQELLKVM	8	Unmodified	_FQELLKVM_					0	0	0		ENST00000498466.1_1_3:122087016-122102071:-|nuORF;ENSG00000160124|ENST00000291458|MIX23	ENST00000498466.1_1_3:122087016-122102071:-|nuORF	ENST00000498466.1_1_3:122087016-122102071:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.30889892578125	2	504.283346	1006.55214	1.3376	0.00067453	-0.94149	-0.00047478	0.39611	0.00019975	504.28268076511137	113.69	0.8947	113.69	113.57	114.47	0					24	19	2	0	0	0	0.028476	1	12964	12964		63.306	17.354	1	103960			12185	6040	9981	9993	13342	13342					0.0491247271930888
FQHGKVEII	9	Unmodified	_FQHGKVEII_					0	0	0		nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;ENST00000443628.2_1_X:114011229-114011283:-|nuORF;ENST00000397642.3_1_1:247393292-247393445:+|nuORF;ENST00000532167.5_1_11:122930938-122932032:-|nuORF;ENST00000531063.1_1_11:122931759-122932032:-|nuORF;ENST00000533238.5_1_11:122929516-122932032:-|nuORF;HSPA2|p.L203Afs*12|1|0.08|ENSG00000126803|chr14:64541454-64541455|-/TG|frameshift_variant;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000109971|ENST00000534624|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENSG00000126803|ENST00000247207|HSPA2;HSPA8|p.A182Pfs*14|1|0.3|ENSG00000109971|chr11:123060136-123060137|-/TTTCTGGTGGAAACTACGAATGGTTTTGG|frameshift_variant;HSPA8|p.A182Vfs*18|1|0.31|ENSG00000109971|chr11:123060135-123060136|-/A|frameshift_variant;ENST00000532780.5_1_11:122930757-122933127:-|nuORF;HSPA8|p.D333Gfs*25|1|0.46|ENSG00000109971|chr11:123059585-123059595|CAGGACAATAT/-|frameshift_variant;ENSG00000204390|ENST00000375654|HSPA1L	nc|ENSG00000204389|P0DMV8-2|HSPA1A;nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000204390|ENST00000375654|HSPA1L	nc|ENSG00000109971|P11142-2|HSPA8	MULTI-MSMS	OvCa99_classI_Rep5	1	535.8045654296875	2	535.803291	1069.59203	-0.57638	-0.00030883	-0.52976	-0.00028385	-1.1061	-0.00059267	535.8030025522003	65.429	1.9861	65.429	65.15	67.136	0					159	49	7	0	0	0	0.070405	3	5988	5988;6016;6047		107.01	35.13	1	32992000			12186	2745;8979;8978	9982	9994	13343;13344;13345	13343					0.06001735714221468
FQHLTCVI	8	Unmodified	_FQHLTCVI_					0	0	0		ENSG00000023445|ENST00000263464|BIRC3	ENSG00000023445|ENST00000263464|BIRC3	ENSG00000023445|ENST00000263464|BIRC3	MULTI-MSMS	OvCa9_classI_Rep2	2	480.7495422363281	2	480.752213	959.489873	-1.0394	-0.00049969	-3.1499	-0.0015143	-4.1893	-0.002014	480.7505959208067	48.711	0.59871	45.951	45.578	46.177	-2.7603					36	11	4	0	0	0	0.6962	1	3051	3051		44.117	3.3386	1	554530			12187	1039	9983	9995	13346	13346					0.008507463709747753
FQHVGKAF	8	Unmodified	_FQHVGKAF_					0	0	0		RPL27A-EEF1G|1|fusion;ENSG00000254772|ENST00000329251|EEF1G;nc|ENSG00000254772|P26641-2|EEF1G;ENST00000526409.5_1_11:62327153-62342310:-|nuORF	RPL27A-EEF1G|1|fusion	RPL27A-EEF1G|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	467.25189208984375	2	467.250695	932.486836	-0.22331	-0.00010434	0.33514	0.00015659	0.11183	5.2253E-05	467.2507746648185	50.957	0.56093	50.957	50.73	51.291	0					22	12	2	0	0	0	0.53531	1	3901	3901		73.975	10.668	1	883510			12188	32789	9984	9996	13347	13347					0.017892393084707692
FQHVGQTL	8	Unmodified	_FQHVGQTL_					0	0	0		MDN1|p.E3571Vfs*18|1|0.11|ENSG00000112159|chr6:89690710-89690711|-/AGGGAAGGAGAGTCACTTA|frameshift_variant;MDN1|p.N5282Ifs*9|1|0.04|ENSG00000112159|chr6:89652262-89652263|-/GATTTTTCTGCCAACTA|frameshift_variant;MDN1|p.I5359Kfs*8|1|0.1|ENSG00000112159|chr6:89650154-89650155|-/CATAGCT|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1	MDN1|p.E3571Vfs*18|1|0.11|ENSG00000112159|chr6:89690710-89690711|-/AGGGAAGGAGAGTCACTTA|frameshift_variant	MDN1|p.E3571Vfs*18|1|0.11|ENSG00000112159|chr6:89690710-89690711|-/AGGGAAGGAGAGTCACTTA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	465.2467346191406	2	465.245609	928.476666	0.029934	1.3927E-05	-0.072512	-3.3736E-05	-0.042579	-1.9809E-05	465.2454433524679	60.959	0.81261	60.959	60.73	61.542	0					37	18	3	0	0	0	0.25402	1	5342	5342		115.46	26.816	1	2077500			12189	2882	9985	9997	13348	13348					0.009566315832444161
FQHVGQTL	8	Unmodified	_FQHVGQTL_					0	0	0		MDN1|p.E3571Vfs*18|1|0.11|ENSG00000112159|chr6:89690710-89690711|-/AGGGAAGGAGAGTCACTTA|frameshift_variant;MDN1|p.N5282Ifs*9|1|0.04|ENSG00000112159|chr6:89652262-89652263|-/GATTTTTCTGCCAACTA|frameshift_variant;MDN1|p.I5359Kfs*8|1|0.1|ENSG00000112159|chr6:89650154-89650155|-/CATAGCT|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1	MDN1|p.E3571Vfs*18|1|0.11|ENSG00000112159|chr6:89690710-89690711|-/AGGGAAGGAGAGTCACTTA|frameshift_variant	MDN1|p.E3571Vfs*18|1|0.11|ENSG00000112159|chr6:89690710-89690711|-/AGGGAAGGAGAGTCACTTA|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	465.245609	928.476666	-0.91437	-0.00042541	1.2237	0.0005693	0.30929	0.0001439	465.24594853179985	63.949	0.89228	61.211	60.746	61.638	-2.738	0.1256	0.0008016	NaN	115.46	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54529			12190	2882	9985	9997							0.009566315832444161
FQHVGTHSSL	10	Unmodified	_FQHVGTHSSL_					0	0	0		nc|ENSG00000161013|Q9UQ53-2|MGAT4B;ENSG00000161013|ENST00000292591|MGAT4B;nc|ENSG00000161013|Q9UQ53-3|MGAT4B;ENST00000522293.5_1_5:179225178-179226553:-|nuORF	nc|ENSG00000161013|Q9UQ53-2|MGAT4B	nc|ENSG00000161013|Q9UQ53-2|MGAT4B	MULTI-MSMS	OvCa99_classI_Rep5	1	556.7791137695312	2	556.777805	1111.54106	1.8029	0.0010038	-0.70158	-0.00039062	1.1013	0.00061317	556.7773181278568	148.16	1.4181	148.16	147.74	149.16	0					34	28	3	0	0	0	0.45822	1	17332	17332		60.118	4.6141	1	92104			12191	6115	9986	9998	13349	13349					-0.010252133306039468
FQKINIEIK	9	Unmodified	_FQKINIEIK_					0	0	0			REV__tr|A0A7D7A330|A0A7D7A330_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22105PE=4SV=1	REV__tr|A0A7D7A330|A0A7D7A330_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22105PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	566.8156127929688	2	566.839874	1131.66519	-0.18709	-0.00010605	-0.99015	-0.00056126	-1.1772	-0.00066731	566.8391333676985	109.94	0.83952	108.8	108.51	109.35	-1.1444					28	15	2	0	0	0	0.027453	1	7908	7908		37.812	0	1	57656	+		12192	32566	9987	9999	13350	13350					0.10462864436817654
FQKKLVDTI	9	Unmodified	_FQKKLVDTI_					0	0	0		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	MULTI-MSMS	OvCa99_classI_Rep5	1	546.327392578125	2	546.326599	1090.63865	-0.075544	-4.1271E-05	-1.3739	-0.00075059	-1.4494	-0.00079186	546.3261869459654	64.888	1.987	64.888	64.588	66.575	0					165	49	5	0	0	0	0.16562	1	5914	5914		82.241	5.4664	1	23011000			12193	6212	9988	10000	13351	13351					0.09695175545539314
FQLDCSHASKL	11	Unmodified	_FQLDCSHASKL_					0	0	0		ENST00000538986.1_1_12:11149866-11149986:-|nuORF	ENST00000538986.1_1_12:11149866-11149986:-|nuORF	ENST00000538986.1_1_12:11149866-11149986:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	416.8741760253906	3	416.872895	1247.59686	0.2476	0.00010322	0.010586	4.4129E-06	0.25818	0.00010763	416.8727091773208	61.925	2.0223	61.925	60.559	62.581	0					119	47	4	0	0	0	0.24568	1	5479	5479		73.841	12.15	1	2885700			12194	13429	9989	10001	13352	13352					-0.01703748205318334
FQLKRGDKPW	10	Unmodified	_FQLKRGDKPW_					0	0	0		ZNF2|p.H191Ifs*30|1|0.08|ENSG00000275111|chr2:95181398-95181398|C/-|frameshift_variant;nc|ENSG00000275111|Q9BSG1-3|ZNF2;ENSG00000275111|ENST00000614034|ZNF2	ZNF2|p.H191Ifs*30|1|0.08|ENSG00000275111|chr2:95181398-95181398|C/-|frameshift_variant	ZNF2|p.H191Ifs*30|1|0.08|ENSG00000275111|chr2:95181398-95181398|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	637.8507690429688	2	637.853847	1273.69314	-3.0456	-0.0019426	1.737	0.001108	-1.3086	-0.00083467	637.8549459050607	151.89	0.81158	150.45	150.08	150.89	-1.4351					37	17	3	0	0	0	0.69073	1	15032	15032		31.53	5.9558	1	44945			12195	9568	9990	10002	13353	13353					0.06724187416921268
FQLKRGDKPW	10	Unmodified	_FQLKRGDKPW_					0	0	0		ZNF2|p.H191Ifs*30|1|0.08|ENSG00000275111|chr2:95181398-95181398|C/-|frameshift_variant;nc|ENSG00000275111|Q9BSG1-3|ZNF2;ENSG00000275111|ENST00000614034|ZNF2	ZNF2|p.H191Ifs*30|1|0.08|ENSG00000275111|chr2:95181398-95181398|C/-|frameshift_variant	ZNF2|p.H191Ifs*30|1|0.08|ENSG00000275111|chr2:95181398-95181398|C/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	637.853847	1273.69314	-4.1455	-0.0026442	3.2344	0.0020631	-0.91115	-0.00058118	637.8557278071793	150.92	0.84755	150.7	150.45	151.29	-0.22696	0.17851	0.00035815	NaN	31.53	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32919			12196	9568	9990	10002							0.06724187416921268
FQLKRGDKPW	10	Unmodified	_FQLKRGDKPW_					0	0	0		ZNF2|p.H191Ifs*30|1|0.08|ENSG00000275111|chr2:95181398-95181398|C/-|frameshift_variant;nc|ENSG00000275111|Q9BSG1-3|ZNF2;ENSG00000275111|ENST00000614034|ZNF2	ZNF2|p.H191Ifs*30|1|0.08|ENSG00000275111|chr2:95181398-95181398|C/-|frameshift_variant	ZNF2|p.H191Ifs*30|1|0.08|ENSG00000275111|chr2:95181398-95181398|C/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	637.853847	1273.69314	-4.6881	-0.0029904	3.5819	0.0022847	-1.1062	-0.0007056	637.8559652696575	151.36	1.003	150.4	150.11	151.11	-0.95647	-0.1141	0.00080152	NaN	31.53	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52763			12197	9568	9990	10002							0.06724187416921268
FQLNTKSVR	9	Unmodified	_FQLNTKSVR_					0	0	0		tr|A0A553STZ5|A0A553STZ5_NIACIMepoperonproteinMepBOS=NialliacirculansOX=1397GN=CEQ21_06010PE=4SV=1	tr|A0A553STZ5|A0A553STZ5_NIACIMepoperonproteinMepBOS=NialliacirculansOX=1397GN=CEQ21_06010PE=4SV=1	tr|A0A553STZ5|A0A553STZ5_NIACIMepoperonproteinMepBOS=NialliacirculansOX=1397GN=CEQ21_06010PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	546.8123779296875	2	546.811648	1091.60874	-0.81654	-0.00044649	-0.31743	-0.00017357	-1.134	-0.00062007	546.8115392968579	78.277	5.424	75.924	75.402	80.825	-2.3527					239	107	5	0	0	0	0.31747	1	4257	4257		60.972	4.2509	1	6405800			12198	34555	9991	10003	13354	13354					0.06660236600191638
FQLNWDFT	8	Unmodified	_FQLNWDFT_					0	0	0			REV__ENSG00000106648|ENST00000392800|GALNTL5	REV__ENSG00000106648|ENST00000392800|GALNTL5	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3294067382812	2	535.750724	1069.4869	-0.6433	-0.00034465	0.15265	8.178E-05	-0.49065	-0.00026287	535.7506841383663	28.763	1.0962	28.763	28.34	29.436	0					34	21	2	0	0	0	0.028476	1	1000	1000		35.201	0	1	32766	+		12199	17818	9992	10004	13355	13355					-0.04506805482196796
FQLSGQKL	8	Unmodified	_FQLSGQKL_					0	0	0		ENST00000595138.1_1_19:43519232-43530599:-|nuORF;ENST00000594655.5_1_19:43519232-43530590:-|nuORF;PSG6|p.I380Sfs*29|1|0.05|ENSG00000170848|chr19:42907024-42907024|T/-|frameshift_variant;ENSG00000221826|ENST00000327495|PSG3;ENSG00000124467|ENST00000306511|PSG8;ENSG00000170848|ENST00000187910|PSG6;ENSG00000221878|ENST00000406070|PSG7;ENSG00000243137|ENST00000405312|PSG4;nc|ENSG00000124467|Q9UQ74-3|PSG8;ENST00000597349.1_1_19:43698456-43699159:-|nuORF;ENST00000490769.1_1_19:43697526-43698852:-|nuORF;ENSG00000243130|ENST00000320078|PSG11;nc|ENSG00000243137|Q00888-3|PSG4;nc|ENSG00000243137|Q00888-2|PSG4;nc|ENSG00000124467|Q9UQ74-2|PSG8;ENST00000599753.1_2_19:43406566-43412082:-|nuORF;nc|ENSG00000243130|Q9UQ72-2|PSG11;nc|ENSG00000170848|Q00889|PSG6	ENST00000595138.1_1_19:43519232-43530599:-|nuORF	ENST00000595138.1_1_19:43519232-43530599:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	461.2568664550781	2	460.763635	919.512717	-1.118	-0.00051512	1.179	0.00054326	0.061075	2.8141E-05	460.764140615834	69.954	0.3335	69.954	69.756	70.089	0					10	7	2	0	0	0	0.028476	1	6697	6697		60.972	0	1	144740			12200	14165	9993	10005	13356	13356					0.04974088760093309
FQMTFHLFI	9	Unmodified	_FQMTFHLFI_					0	0	0		nc|ENSG00000123560|P60201-2|PLP1;ENSG00000123560|ENST00000621218|PLP1	nc|ENSG00000123560|P60201-2|PLP1	nc|ENSG00000123560|P60201-2|PLP1	MULTI-MSMS	OvCa9_classI_Rep3	3	592.302734375	2	592.30207	1182.58959	-1.1031	-0.00065338	-1.1166	-0.00066136	-2.2197	-0.0013147	592.301413895625	81.905	2.5111	79.609	78.932	81.443	-2.2963					125	50	5	0	0	0	0.38529	1	4579	4579		53.351	3.9099	1	2078200			12201	3603	9994	10006	13357	13357					0.005595639849161671
FQNNVQVKV	9	Unmodified	_FQNNVQVKV_					0	0	0		nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-5|OS9;nc|ENSG00000135506|Q13438-6|OS9;ENST00000550699.5_1_12:58109828-58111744:+|nuORF;ENST00000549307.5_1_12:58109828-58113249:+|nuORF	nc|ENSG00000135506|Q13438-4|OS9	nc|ENSG00000135506|Q13438-4|OS9	MULTI-MSMS	OvCa99_classI_Rep5	1	538.2988891601562	2	538.298373	1074.58219	-0.083185	-4.4778E-05	-0.14602	-7.8601E-05	-0.2292	-0.00012338	538.2980670982266	70.547	0.82236	70.547	70.328	71.15	0					35	20	3	0	0	0	0.091859	1	6770	6770		99.375	27.497	1	2251300			12202	4384	9995	10007	13358	13358					0.047885477088584594
FQNPFRSEL	9	Unmodified	_FQNPFRSEL_					0	0	0		ENSG00000073050|ENST00000262887|XRCC1	ENSG00000073050|ENST00000262887|XRCC1	ENSG00000073050|ENST00000262887|XRCC1	MULTI-MSMS	OvCa99_classI_Rep5	1	569.2899780273438	2	569.288005	1136.56146	0.4056	0.0002309	1.7552	0.0009992	2.1608	0.0012301	569.2889521689342	101.59	1.6994	101.59	101.11	102.81	0					120	39	4	0	0	0	0.033166	2	11296	11270;11296		132.76	28.936	1	20429000			12203	1485	9996	10008	13359;13360	13360					-0.0013604267080609134
FQNPFRSEL	9	Unmodified	_FQNPFRSEL_					0	0	0		ENSG00000073050|ENST00000262887|XRCC1	ENSG00000073050|ENST00000262887|XRCC1	ENSG00000073050|ENST00000262887|XRCC1	MULTI-MSMS	OvCa9_classI_Rep3	3	569.28662109375	2	569.288005	1136.56146	-0.45174	-0.00025717	0.042151	2.3996E-05	-0.40959	-0.00023317	569.2878811912792	102.99	1.3107	101.47	101.05	102.36	-1.5211					66	24	5	0	0	0	0.055627	2	7118	7118;7130		115.49	5.4575	1	446110			12204	1485	9996	10008	13361;13362	13361					-0.0013604267080609134
FQNPFRSEL	9	Unmodified	_FQNPFRSEL_					0	0	0		ENSG00000073050|ENST00000262887|XRCC1	ENSG00000073050|ENST00000262887|XRCC1	ENSG00000073050|ENST00000262887|XRCC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	569.2875366210938	2	569.288005	1136.56146	-0.15044	-8.5646E-05	0.18306	0.00010421	0.032613	1.8566E-05	569.2878561379202	103.68	1.3592	101.56	101.02	102.38	-2.1192					70	25	4	0	0	0	0.1243	2	9369	9358;9369		90.601	13.827	1	399520			12205	1485	9996	10008	13363;13364	13364					-0.0013604267080609134
FQNPFRSEL	9	Unmodified	_FQNPFRSEL_					0	0	0		ENSG00000073050|ENST00000262887|XRCC1	ENSG00000073050|ENST00000262887|XRCC1	ENSG00000073050|ENST00000262887|XRCC1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	569.288005	1136.56146	-1.5583	-0.0008871	1.4512	0.00082615	-0.10706	-6.0946E-05	569.2886118922199	102.11	1.1877	101.36	100.98	102.17	-0.74895	-0.13416	0.0006148	NaN	132.76	67	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	352760			12206	1485	9996	10008							-0.0013604267080609134
FQPGSLASMDL	11	Unmodified	_FQPGSLASMDL_					0	0	0			REV__ENST00000422839.5_2_22:31476543-31476630:+|nuORF	REV__ENST00000422839.5_2_22:31476543-31476630:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	583.2732543945312	2	583.281531	1164.54851	1.3396	0.00078139	0.70765	0.00041276	2.0473	0.0011942	583.281194642547	118.76	0.80293	118.76	118.25	119.05	0					38	16	4	0	0	0	0.52474	1	13641	13641		51.528	7.411	1	307590	+		12207	25624	9997	10009	13365	13365					-0.02718241845218472
FQPGSLASMDL	11	Unmodified	_FQPGSLASMDL_					0	0	0			REV__ENST00000422839.5_2_22:31476543-31476630:+|nuORF	REV__ENST00000422839.5_2_22:31476543-31476630:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	583.281531	1164.54851	1.3396	0.00078139	0.70765	0.00041276	2.0473	0.0011942	583.281194642547	118.76	0.80293	118.76	118.25	119.05	0	0	0	NaN	51.528	38	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307590	+		12208	25624	9997	10009							-0.02718241845218472
FQPIVVTVID	10	Unmodified	_FQPIVVTVID_					0	0	0			REV__tr|A0A7D7A3V6|A0A7D7A3V6_9CLOTAPCfamilypermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23060PE=4SV=1	REV__tr|A0A7D7A3V6|A0A7D7A3V6_9CLOTAPCfamilypermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23060PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.8883056640625	2	565.826432	1129.63831	2.3317	0.0013193	-2.6116	-0.0014777	-0.27987	-0.00015836	565.8255716572719	118.12	0.74067	118.12	117.65	118.39	0					20	15	2	0	0	0	0.026891	1	13555	13555		47.657	17.816	1	78589	+		12209	32596	9998	10010	13366	13366					0.0786775582566861
FQRDYYDRM	9	Unmodified	_FQRDYYDRM_					0	0	0		nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;nc|ENSG00000092199|P07910-3|HNRNPC;ENST00000556181.1_1_14:58988169-58988316:+|nuORF	nc|ENSG00000092199|P07910-4|HNRNPC	nc|ENSG00000092199|P07910-4|HNRNPC	MULTI-MSMS	OvCa99_classI_Rep5	1	647.2897338867188	2	647.287679	1292.56081	-0.47478	-0.00030732	0.35361	0.00022889	-0.12118	-7.8436E-05	647.2878685049379	59.267	0.75569	59.267	59.046	59.802	0					49	19	4	0	0	0	0.1243	1	5100	5100		90.601	28.91	1	5460500			12210	1889	9999	10011	13367	13367					-0.07377205382181273
FQRFIMILTEH	11	Unmodified	_FQRFIMILTEH_					0	0	0		ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	MULTI-SECPEP	OvCa9_classI_Rep3	3	478.28564453125	3	478.92359	1433.74894	-0.074717	-3.5784E-05	0.96503	0.00046217	0.89031	0.00042639	479.2578718326039	89.826	0.41174	87.745	87.592	88.004	-2.0805					10	7	2	0	0	0	0.02625	1	5531	5531		13.508	4.7086	1	12123			12211	4537	10000	10012	13368	13368					0.04941652542265729
FQRKAVVV	8	Unmodified	_FQRKAVVV_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	OvCa99_classI_Rep5	1	473.7954406738281	2	473.795269	945.575986	0.57993	0.00027477	-0.55592	-0.00026339	0.024013	1.1377E-05	473.7948800382555	45.808	0.91582	45.808	45.54	46.456	0					43	20	4	0	0	0	0.59148	2	3202	3180;3202		65.803	21.272	1	4639800			12212	5665	10001	10013	13369;13370	13370					0.10102074267990702
FQSAMHPS	8	Unmodified	_FQSAMHPS_					0	0	0			REV__L1PA7_dup282|chr1:88818677-88820142:+|1.0289078366989055|0.4624574098713206|1.15|428.0|87|3|anti-sense	REV__L1PA7_dup282|chr1:88818677-88820142:+|1.0289078366989055|0.4624574098713206|1.15|428.0|87|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	452.70458984375	2	452.70272	903.390887	2.2431	0.0010154	1.2434	0.00056289	3.4864	0.0015783	452.70324167027087	31.032	1.5294	28.322	28.15	29.679	-2.7097					67	30	4	0	0	0	0.38598	5	916	897;903;916;929;942		90.777	32.965	1	376420	+		12213	28542	10002	10014	13371;13372;13373;13374;13375	13373					-0.06467276593923543
FQSLLYLLL	9	Unmodified	_FQSLLYLLL_					0	0	0		nc|ENSG00000155755|Q96Q45-4|TMEM237;nc|ENSG00000155755|Q96Q45-2|TMEM237;ENSG00000155755|ENST00000409883|TMEM237;nc|ENSG00000155755|Q96Q45-5|TMEM237;nc|ENSG00000155755|Q96Q45-3|TMEM237	nc|ENSG00000155755|Q96Q45-4|TMEM237	nc|ENSG00000155755|Q96Q45-4|TMEM237	MULTI-SECPEP	OvCa9_classI_Rep3	3	556.2962036132812	2	555.333893	1108.65323	-4.028	-0.0022369	4.1992	0.002332	0.17123	9.509E-05	555.3362386878374	146.45	1.448	145.49	145.2	146.64	-0.95947					43	28	2	0	0	0	0.027462	1	12290	12290		37.159	0	1	22537			12214	5799	10003	10015	13376	13376					0.10325247693663187
FQTEVGKQL	9	Unmodified	_FQTEVGKQL_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46314678-46340855:-|nuORF	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MULTI-MSMS	OvCa99_classI_Rep5	1	525.2865600585938	2	525.284931	1048.55531	-0.41325	-0.00021708	1.1928	0.00062656	0.77955	0.00040949	525.2857420981629	69.329	0.56527	69.329	69.106	69.672	0					30	13	3	0	0	0	0.025955	1	6595	6595		139.97	29.851	1	2959400			12215	6050	10004	10016	13377	13377					0.03297439097673305
FQTEVGKQLI	10	Unmodified	_FQTEVGKQLI_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46314678-46340855:-|nuORF	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MULTI-MSMS	OvCa99_classI_Rep5	1	581.8291015625	2	581.826963	1161.63937	2.6278	0.0015289	-0.41699	-0.00024262	2.2108	0.0012863	581.8266890972174	89.87	0.66965	89.87	89.6	90.269	0					32	15	4	0	0	0	0.40664	1	9612	9612		67.494	3.2864	1	1182400			12216	6050	10005	10017	13378	13378					0.06501970194585738
FQTKGIKV	8	Unmodified	_FQTKGIKV_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	OvCa99_classI_Rep5	1	460.78338623046875	2	460.781828	919.549102	-0.34474	-0.00015885	0.33832	0.00015589	-0.0064226	-2.9594E-06	460.78184983220933	54.042	1.2905	54.042	53.774	55.064	0					68	30	4	0	0	0	0.61436	1	4321	4321		60.972	6.1956	1	6729100			12217	1827	10006	10018	13379	13379					0.08610965656805547
FQTQQYKL	8	Unmodified	_FQTQQYKL_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;ACOX1|p.L494Ffs*32|1|0.02|ENSG00000161533|chr17:75949597-75949598|-/TGGGCTCCCA|frameshift_variant	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MSMS	OvCa99_classI_Rep5	1	528.2809448242188	2	528.279649	1054.54475	0.39433	0.00020832	-0.31051	-0.00016404	0.083819	4.428E-05	528.2794885218036	72.272	0.76695	72.272	71.956	72.723	0					30	18	3	0	0	0	0.22496	1	7031	7031		120.62	32.867	1	1829900			12218	6130	10007	10019	13380	13380					0.0196545644323578
FQVLMKTKR	9	Unmodified	_FQVLMKTKR_					0	0	0			REV__ENSG00000120289|ENST00000378982|MAGEB4	REV__ENSG00000120289|ENST00000378982|MAGEB4	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8424072265625	2	575.841894	1149.66923	-2.1491	-0.0012375	4.2038	0.0024207	2.0547	0.0011832	575.8441928035448	141.47	4.0925	141.24	139.21	143.3	-0.22696					166	82	3	0	0	0	0.62352	1	14130	14130		29.15	1.2673	1	100260	+		12219	18494	10008	10020	13381	13381					0.10038630658914371
FQVPRSGLF	9	Unmodified	_FQVPRSGLF_					0	0	0			REV__nc|ENSG00000102858|O60291-4|MGRN1	REV__nc|ENSG00000102858|O60291-4|MGRN1	MULTI-MSMS	OvCa9_classI_Rep3	3	525.7890625	2	525.790184	1049.56581	0.84555	0.00044458	1.9369	0.0010184	2.7824	0.001463	525.7910764310839	64	1.5926	61.007	60.457	62.05	-2.9933					50	31	2	0	0	0	0.55588	1	2438	2438		37.159	10.363	1	38100	+		12220	17575	10009	10021	13382	13382					0.04301466542756316
FQVVAISRANK	11	Unmodified	_FQVVAISRANK_					0	0	0		tr|A0A7D6ZN01|A0A7D6ZN01_9CLOTTrksystempotassiumuptakeproteinTrkAOS=ClostridiumintestinaleOX=36845GN=HZF06_14120PE=4SV=1	tr|A0A7D6ZN01|A0A7D6ZN01_9CLOTTrksystempotassiumuptakeproteinTrkAOS=ClostridiumintestinaleOX=36845GN=HZF06_14120PE=4SV=1	tr|A0A7D6ZN01|A0A7D6ZN01_9CLOTTrksystempotassiumuptakeproteinTrkAOS=ClostridiumintestinaleOX=36845GN=HZF06_14120PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	411.57830810546875	3	411.575178	1231.70371	4.5945	0.001891	3.4062	0.0014019	8.0007	0.0032929	411.57657624517054	25.113	0.89927	22.404	22.261	23.161	-2.7097					40	19	3	0	0	0	0.68709	1	222	222		34.087	1.336	1	146440			12221	35671	10010	10022	13383	13383					0.0971217007136147
FQYDHEAFL	9	Unmodified	_FQYDHEAFL_					0	0	0		ENSG00000142552|ENST00000270645|RCN3;ENST00000593644.1_1_19:50031828-50040290:+|nuORF;ENST00000398357.2_1_13:45965036-45965387:-|nuORF;ENSG00000049449|ENST00000054950|RCN1	ENSG00000142552|ENST00000270645|RCN3;ENSG00000049449|ENST00000054950|RCN1	ENSG00000049449|ENST00000054950|RCN1	MULTI-MSMS	OvCa99_classI_Rep5	1	585.2681884765625	2	585.266739	1168.51892	0.45638	0.0002671	1.3116	0.00076763	1.768	0.0010347	585.2674557825887	101.47	3.0866	101.47	101.15	104.24	0					172	72	5	0	0	0	0.1944	1	11297	11297		77.318	8.5308	1	20030000			12222	1169;4979	10011	10023	13384	13384					-0.05859437799040279
FQYDHEAFL	9	Unmodified	_FQYDHEAFL_					0	0	0		ENSG00000142552|ENST00000270645|RCN3;ENST00000593644.1_1_19:50031828-50040290:+|nuORF;ENST00000398357.2_1_13:45965036-45965387:-|nuORF;ENSG00000049449|ENST00000054950|RCN1	ENSG00000142552|ENST00000270645|RCN3;ENSG00000049449|ENST00000054950|RCN1	ENSG00000049449|ENST00000054950|RCN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	585.266739	1168.51892	-1.2624	-0.00073883	0.38814	0.00022717	-0.87424	-0.00051166	585.2666232527699	102.28	0.84197	101.6	101.14	101.98	-0.68459	0.074427	-0.00081745	NaN	77.318	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37341			12223	1169;4979	10011	10023							-0.05859437799040279
FQYDHEAFL	9	Unmodified	_FQYDHEAFL_					0	0	0		ENSG00000142552|ENST00000270645|RCN3;ENST00000593644.1_1_19:50031828-50040290:+|nuORF;ENST00000398357.2_1_13:45965036-45965387:-|nuORF;ENSG00000049449|ENST00000054950|RCN1	ENSG00000142552|ENST00000270645|RCN3;ENSG00000049449|ENST00000054950|RCN1	ENSG00000049449|ENST00000054950|RCN1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	585.266739	1168.51892	-1.5093	-0.00088336	0.68035	0.00039818	-0.82899	-0.00048518	585.2667303972569	103.03	1.4146	101.51	100.89	102.31	-1.5211	-0.016723	-0.00047541	NaN	77.318	41	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39110			12224	1169;4979	10011	10023							-0.05859437799040279
FQYDHEAFL	9	Unmodified	_FQYDHEAFL_					0	0	0		ENSG00000142552|ENST00000270645|RCN3;ENST00000593644.1_1_19:50031828-50040290:+|nuORF;ENST00000398357.2_1_13:45965036-45965387:-|nuORF;ENSG00000049449|ENST00000054950|RCN1	ENSG00000142552|ENST00000270645|RCN3;ENSG00000049449|ENST00000054950|RCN1	ENSG00000049449|ENST00000054950|RCN1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	585.266739	1168.51892	-1.046	-0.00061219	0.35092	0.00020538	-0.69508	-0.00040681	585.2664809797743	103.64	1.5165	101.52	100.86	102.38	-2.1192	-0.0013156	-0.00086102	NaN	77.318	41	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34849			12225	1169;4979	10011	10023							-0.05859437799040279
FQYESKVFY	9	Unmodified	_FQYESKVFY_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF	ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	OvCa99_classI_Rep5	1	605.8020629882812	2	605.792589	1209.57063	2.2444	0.0013596	0.068674	4.1602E-05	2.3131	0.0014013	605.792541163636	93.847	0.84309	93.847	93.59	94.433	0					55	19	4	0	0	0	0.13504	1	10181	10181		87.696	23.489	1	3458900			12226	3868	10012	10024	13385	13385					-0.025776941051390168
FQYLFQPL	8	Unmodified	_FQYLFQPL_					0	0	0			REV__nc|ENSG00000101974|Q8NB49-2|ATP11C	REV__nc|ENSG00000101974|Q8NB49-2|ATP11C	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.8235473632812	2	528.28166	1054.54877	-0.30095	-0.00015898	-1.7265	-0.00091208	-2.0275	-0.0010711	528.2806154838431	113.48	1.4228	112.03	111.31	112.73	-1.4461					54	28	3	0	0	0	0.028476	1	10506	10506		37.028	6.5248	1	43732	+		12227	17531	10013	10025	13386	13386					0.023675459369314922
FQYLFQPL	8	Unmodified	_FQYLFQPL_					0	0	0			REV__nc|ENSG00000101974|Q8NB49-2|ATP11C	REV__nc|ENSG00000101974|Q8NB49-2|ATP11C	MULTI-MATCH	OvCa9_classI_Rep2	2		2	528.28166	1054.54877	0.13565	7.1661E-05	-2.9934	-0.0015814	-2.8577	-0.0015097	528.2801653136232	112.33	1.2814	112.2	111.64	112.92	-0.12174	0.08649	-0.00052457	NaN	44.531	39	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39002	+		12228	17531	10013	10025							0.023675459369314922
FQYPDTRYL	9	Unmodified	_FQYPDTRYL_					0	0	0		ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	MULTI-MSMS	OvCa99_classI_Rep5	1	601.7960815429688	2	601.795663	1201.57677	2.4984	0.0015036	0.41718	0.00025106	2.9156	0.0017546	601.7958070974315	98.787	0.36436	98.787	98.552	98.916	0					23	8	3	0	0	0	0.17606	1	10890	10890		80.455	18.347	1	8288800			12229	9574	10014	10026	13387	13387					-0.01595175873626431
FQYTAWELT	9	Unmodified	_FQYTAWELT_					0	0	0		ENSG00000155085|ENST00000424296|AK9;nc|ENSG00000155085|Q5TCS8-3|AK9;nc|ENSG00000155085|Q5TCS8-6|AK9;ENST00000466992.1_1_6:109871214-109940313:-|nuORF	ENSG00000155085|ENST00000424296|AK9	ENSG00000155085|ENST00000424296|AK9	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.7982788085938	2	579.776939	1157.53933	1.8389	0.0010662	0.62733	0.00036371	2.4662	0.0014299	579.7775958819578	95.795	0.29202	95.795	95.577	95.869	0					9	6	2	0	0	0	0.027462	1	10474	10474		23.042	0	1	225640			12230	5767	10015	10027	13388	13388					-0.03314267139239746
FRAARFRI	8	Unmodified	_FRAARFRI_					0	0	0		HTR1A|p.R227H|1|0.5|ENSG00000178394|chr5:63961040-63961040|C/T|missense_variant;ENSG00000178394|ENST00000323865|HTR1A	HTR1A|p.R227H|1|0.5|ENSG00000178394|chr5:63961040-63961040|C/T|missense_variant	HTR1A|p.R227H|1|0.5|ENSG00000178394|chr5:63961040-63961040|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	518.8037719726562	2	518.811785	1035.60902	1.8637	0.00096692	-4.155	-0.0021557	-2.2913	-0.0011887	518.8096777874774	87.789	3.0579	86.358	85.791	88.849	-1.4311					163	61	6	0	0	0	0.71369	1	7752	7752		40.573	1.7665	1	5567100			12231	7751	10016	10028	13389	13389					0.09263701110694456
FRANLQRQV	9	Unmodified	_FRANLQRQV_					0	0	0		nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-11|MYLK;nc|ENSG00000065534|Q15746-7|MYLK;MYLK|p.E1444Sfs*9|1|0.06|ENSG00000065534|chr3:123649056-123649056|C/-|frameshift_variant;ENST00000504946.5_1_3:123400948-123419770:-|nuORF	nc|ENSG00000065534|Q15746-5|MYLK	nc|ENSG00000065534|Q15746-5|MYLK	MULTI-MSMS	OvCa99_classI_Rep5	1	566.3240356445312	2	566.322714	1130.63087	0.062609	3.5457E-05	-0.37913	-0.00021471	-0.31652	-0.00017925	566.3223529100455	52.389	0.70098	52.389	52.127	52.828	0					41	15	4	0	0	0	0.27001	1	4100	4100		66.429	15.237	1	2302200			12232	1330	10017	10029	13390	13390					0.07078461068590514
FRAPDIKEI	9	Unmodified	_FRAPDIKEI_					0	0	0			REV__ENSG00000066739|ENST00000359933|ATG2B	REV__ENSG00000066739|ENST00000359933|ATG2B	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.3040771484375	2	544.808574	1087.60259	-0.64926	-0.00035372	-1.2496	-0.00068079	-1.8989	-0.0010345	544.8076339848565	79.133	2.3917	76.382	75.426	77.817	-2.7514					108	49	3	0	0	0	0.060996	1	6388	6388		112.41	2.291	1	2689700	+		12233	16822	10018	10030	13391	13391					0.062297183686723656
FRAQRNLYI	9	Unmodified	_FRAQRNLYI_					0	0	0		ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31;chrX:153700899-153715567|256|35.38|0.0|21.75|-|2|None,BCAP31|1	ENSG00000185825|ENST00000345046|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	MULTI-MSMS	OvCa99_classI_Rep5	1	590.8349609375	2	590.832914	1179.65128	-0.39202	-0.00023162	-0.4714	-0.00027852	-0.86342	-0.00051014	590.8324752056643	67.797	0.66354	67.797	67.528	68.192	0					41	16	3	0	0	0	0.29717	1	6362	6362		63.306	1.1989	1	1979300			12234	8290	10019	10031	13392	13392					0.0686363172842448
FRARILIF	8	Unmodified	_FRARILIF_					0	0	0		nc|ENSG00000112339|Q9Y450-4|HBS1L;ENSG00000112339|ENST00000367837|HBS1L;ENST00000527005.5_1_6:135286419-135303731:-|nuORF	nc|ENSG00000112339|Q9Y450-4|HBS1L	nc|ENSG00000112339|Q9Y450-4|HBS1L	MULTI-MSMS	OvCa9_classI_Rep2	2	518.3244018554688	2	518.326737	1034.63892	-0.20131	-0.00010434	-4.4735	-0.0023188	-4.6748	-0.0024231	518.3244380054447	69.411	2.6973	66.791	66.416	69.113	-2.6203					144	52	4	0	0	0	0.7224	1	5505	5505		38.806	1.647	1	2532100			12235	2900	10020	10032	13393	13393					0.12298640056019394
FRCRGVDAN	9	Unmodified	_FRCRGVDAN_					0	0	0		nc|ENSG00000165078|Q8N4T0-2|CPA6;ENST00000518549.1_2_8:68395895-68658364:-|nuORF;ENSG00000165078|ENST00000297770|CPA6	nc|ENSG00000165078|Q8N4T0-2|CPA6	nc|ENSG00000165078|Q8N4T0-2|CPA6	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.2902221679688	2	519.2509	1036.48725	0.95697	0.00049691	0.8068	0.00041893	1.7638	0.00091584	519.2513589417425	98.229	0.42432	98.229	98.037	98.461	0					12	9	2	0	0	0	0.027461	1	10802	10802		49.442	22.749	1	213000			12236	6516	10021	10033	13394	13394					-0.029537090339772476
FREEDNATAAL	11	Unmodified	_FREEDNATAAL_					0	0	0		ENSG00000235961|ENST00000421798|PNMA6A	ENSG00000235961|ENST00000421798|PNMA6A	ENSG00000235961|ENST00000421798|PNMA6A	MSMS	OvCa99_classI_Rep5	1	618.7963256835938	2	618.796392	1235.57823	NaN	NaN	NaN	NaN	NaN	NaN	NaN	156.89	1	156.89	156.39	157.39	0								0	0	0	0.19297	1	18386	18386		41.427	3.6151	1				12237	9310	10022	10034	13395	13395					-0.030135865755028135
FREKKLLYKW	10	Unmodified	_FREKKLLYKW_					0	0	0			REV__tr|A0A553SJQ1|A0A553SJQ1_NIACICytochromeubiquinoloxidasesubunitIOS=NialliacirculansOX=1397GN=CEQ21_17330PE=3SV=1	REV__tr|A0A553SJQ1|A0A553SJQ1_NIACICytochromeubiquinoloxidasesubunitIOS=NialliacirculansOX=1397GN=CEQ21_17330PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	470.94818115234375	3	470.946724	1409.81834	-0.10608	-4.9957E-05	3.0262	0.0014252	2.9201	0.0013752	470.94806579910886	23.14	1.0145	23.14	22.821	23.836	0					50	20	4	0	0	0	0.82892	1	301	301		15.333	0.63944	1	282680	+		12238	30026	10023	10035	13396	13396					0.1298247955332954
FREKLKLT	8	Unmodified	_FREKLKLT_					0	0	0			REV__ENST00000297438.6_1_8:90914343-90921838:+|nuORF	REV__ENST00000297438.6_1_8:90914343-90921838:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.2872924804688	2	517.821484	1033.62842	-1.8068	-0.00093559	0.50838	0.00026325	-1.2984	-0.00067234	517.821610945906	49.013	0.62825	45.871	45.623	46.251	-3.1416					15	11	2	0	0	0	0.028476	1	2711	2711		16.473	8.2419	1	19800	+		12239	24211	10024	10036	13397	13397					0.11294612610936383
FREKLKLT	8	Unmodified	_FREKLKLT_					0	0	0			REV__ENST00000297438.6_1_8:90914343-90921838:+|nuORF	REV__ENST00000297438.6_1_8:90914343-90921838:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	517.821484	1033.62842	-0.54795	-0.00028374	-0.062338	-3.228E-05	-0.61029	-0.00031602	517.8213091524239	48.397	0.64954	45.654	45.396	46.045	-2.7435	-0.10869	-0.00023024	NaN	14.865	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19894	+		12240	24211	10024	10036							0.11294612610936383
FRFAPPQPAP	10	Unmodified	_FRFAPPQPAP_					0	0	0			REV__ENST00000524230.6_3_3:126326756-126373974:-|nuORF	REV__ENST00000524230.6_3_3:126326756-126373974:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.311279296875	2	564.303458	1126.59236	2.0293	0.0011451	3.9053	0.0022038	5.9346	0.0033489	564.3055017165934	34.574	0.95234	31.786	31.449	32.401	-2.7881					33	18	2	0	0	0	0.02725	1	1060	1060		15.642	0	1	56875	+		12241	27097	10025	10037	13398	13398					0.03413155434077453
FRFDLGVPL	9	Unmodified	_FRFDLGVPL_					0	0	0			REV__ENST00000560302.5_1_15:86077249-86077444:+|nuORF	REV__ENST00000560302.5_1_15:86077249-86077444:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.2909545898438	2	532.300384	1062.58622	2.5722	0.0013692	2.7281	0.0014522	5.3003	0.0028213	532.3016546830662	90.44	0.19388	90.44	90.31	90.504	0					6	4	2	0	0	0	0.027462	1	9685	9685		35.618	0	1	583400	+		12242	27616	10026	10038	13399	13399					0.05742637202570222
FRFLLGLLAP	10	Unmodified	_FRFLLGLLAP_					0	0	0		ENSG00000115902|ENST00000234256|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	ENSG00000115902|ENST00000234256|SLC1A4	MSMS	OvCa9_classI_Rep3	3	573.8568725585938	2	573.855327	1145.6961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.359	1	50.161	49.661	50.661	-3.1978								0	0	0	0.16869	1	1298	1298		11.511	3.8207	1				12243	3135	10027	10039	13400	13400					0.12908062541760046
FRFPAAVVV	9	Unmodified	_FRFPAAVVV_					0	0	0		ENSG00000131446|ENST00000307826|MGAT1	ENSG00000131446|ENST00000307826|MGAT1	ENSG00000131446|ENST00000307826|MGAT1	MULTI-MSMS	OvCa99_classI_Rep5	1	503.2991027832031	2	503.297645	1004.58074	1.8457	0.00092895	0.89936	0.00045264	2.7451	0.0013816	503.2981310422337	118.34	1.3626	118.34	117.97	119.33	0					66	28	4	0	0	0	0.55588	1	13557	13557		37.159	3.6435	1	804850			12244	4065	10028	10040	13401	13401					0.07862958410748888
FRFSCLHI	8	Unmodified	_FRFSCLHI_					0	0	0			REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|402|3|anti-sense	REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|402|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	511.766845703125	2	511.765655	1021.51676	-0.66008	-0.00033781	2.6511	0.0013567	1.991	0.0010189	511.7669290807932	57.251	1.1919	54.459	53.981	55.173	-2.792					66	23	6	0	0	0	0.7224	1	4087	4087		38.806	1.647	1	176010	+		12245	28503	10029	10041	13402	13402					0.006858549821572524
FRGEHSTIPLR	11	Unmodified	_FRGEHSTIPLR_					0	0	0			REV__ENST00000525571.1_1_8:11660671-11660866:+|nuORF	REV__ENST00000525571.1_1_8:11660671-11660866:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	438.2435607910156	3	438.242199	1311.70477	0.016088	7.0506E-06	3.6943	0.001619	3.7104	0.001626	438.24381026577817	27.316	0.29848	27.316	27.142	27.44	0					8	5	2	0	0	0	0.71831	1	800	800		23.378	2.3457	1	75957	+		12246	27113	10030	10042	13403	13403					0.0613838444025987
FRGIKHQVD	9	Unmodified	_FRGIKHQVD_					0	0	0		nc|ENSG00000164050|O43157-2|PLXNB1;ENSG00000164050|ENST00000296440|PLXNB1;ENST00000485535.5_1_3:48445895-48454598:-|nuORF;RPL3-PLXNB1|1|fusion	nc|ENSG00000164050|O43157-2|PLXNB1	nc|ENSG00000164050|O43157-2|PLXNB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.3019409179688	2	550.30399	1098.59343	-0.36306	-0.00019979	-2.02	-0.0011116	-2.383	-0.0013114	550.3029145148993	63.654	2.5638	60.179	59.625	62.189	-3.475					135	52	5	0	0	0	0.3076	1	4461	4461		62.107	1.9892	1	19032000			12247	6396	10031	10043	13404	13404					0.048073698030066225
FRGNKLRDK	9	Unmodified	_FRGNKLRDK_					0	0	0		ENSG00000130764|ENST00000378251|LRRC47	ENSG00000130764|ENST00000378251|LRRC47	ENSG00000130764|ENST00000378251|LRRC47	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3282470703125	2	567.330539	1132.64652	-2.6412	-0.0014984	1.1543	0.0006549	-1.4869	-0.00084354	567.3310908608092	141.92	3.9983	140.91	138.91	142.91	-1.0106					224	80	5	0	0	0	0.69403	1	11792	11792		19.997	0	1	127690			12248	4012	10032	10044	13405	13405					0.08550747585650242
FRHDKRVYL	9	Unmodified	_FRHDKRVYL_					0	0	0		PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant;PRPF8|p.Q2065Hfs*8|1|0.04|ENSG00000174231|chr17:1653809-1653810|-/G|frameshift_variant;ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.Q1835Afs*4|1|0.07|ENSG00000174231|chr17:1658255-1658256|-/C|frameshift_variant;PRPF8|p.F1684Dfs*30|1|0.07|ENSG00000174231|chr17:1659445-1659446|-/AAGTCAGGAGATCGAGACCATC|frameshift_variant;PRPF8|p.L371Dfs*10|1|0.04|ENSG00000174231|chr17:1679787-1679788|-/ATATATACTGCAATCCATC|frameshift_variant;ENST00000571346.1_1_17:1586825-1588116:-|nuORF	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	411.89959716796875	3	411.899885	1232.67783	0.48558	0.00020001	-0.71521	-0.0002946	-0.22963	-9.4586E-05	411.8996646693654	41.399	3.0195	41.399	41.104	44.123	0					173	69	5	0	0	0	0.22621	3	2590	2566;2590;2614		98.582	50.394	1	15698000			12249	7449	10033	10045	13406;13407;13408	13407					0.07079320619754981
FRHDKRVYL	9	Unmodified	_FRHDKRVYL_					0	0	0		PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant;PRPF8|p.Q2065Hfs*8|1|0.04|ENSG00000174231|chr17:1653809-1653810|-/G|frameshift_variant;ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.Q1835Afs*4|1|0.07|ENSG00000174231|chr17:1658255-1658256|-/C|frameshift_variant;PRPF8|p.F1684Dfs*30|1|0.07|ENSG00000174231|chr17:1659445-1659446|-/AAGTCAGGAGATCGAGACCATC|frameshift_variant;PRPF8|p.L371Dfs*10|1|0.04|ENSG00000174231|chr17:1679787-1679788|-/ATATATACTGCAATCCATC|frameshift_variant;ENST00000571346.1_1_17:1586825-1588116:-|nuORF	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	617.345947265625	2	617.346189	1232.67783	-0.58869	-0.00036343	0.36161	0.00022324	-0.22708	-0.00014019	617.3463370665592	41.398	1.2682	41.398	41.104	42.372	0					94	28	5	0	0	0	0.28934	2	2597	2573;2597		64.207	9.431	1	3186200			12250	7449	10033	10045	13409;13410	13410					0.07079320619754981
FRHNVTKME	9	Unmodified	_FRHNVTKME_					0	0	0			REV__tr|A0A553SP75|A0A553SP75_NIACIYicCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25795PE=3SV=1	REV__tr|A0A553SP75|A0A553SP75_NIACIYicCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25795PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	581.294677734375	2	581.295307	1160.57606	-1.1812	-0.0006866	-2.1652	-0.0012586	-3.3464	-0.0019452	581.2939251593637	66.146	0.90973	66.146	65.665	66.575	0					57	22	4	0	0	0	0.40667	1	6127	6127		51.335	3.4199	1	4938600	+		12251	30505	10034	10046	13411	13411					0.002197062057121002
FRHSFAVHLL	10	Unmodified	_FRHSFAVHLL_					0	0	0		tr|A0A7D6ZFC9|A0A7D6ZFC9_9CLOTTyrosine-typerecombinase/integraseOS=ClostridiumintestinaleOX=36845GN=HZF06_14405PE=3SV=1	tr|A0A7D6ZFC9|A0A7D6ZFC9_9CLOTTyrosine-typerecombinase/integraseOS=ClostridiumintestinaleOX=36845GN=HZF06_14405PE=3SV=1	tr|A0A7D6ZFC9|A0A7D6ZFC9_9CLOTTyrosine-typerecombinase/integraseOS=ClostridiumintestinaleOX=36845GN=HZF06_14405PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	614.3233032226562	2	613.843282	1225.67201	0.17297	0.00010618	-0.08286	-5.0863E-05	0.090113	5.5316E-05	614.343548949173	66.721	0.61037	66.721	66.288	66.898	0					15	12	2	0	0	0	0.026685	1	6175	6175		23.523	0	1	225050			12252	35506	10035	10047	13412	13412					0.06820222108103735
FRHSPEYTL	9	Unmodified	_FRHSPEYTL_					0	0	0			REV__ENST00000521851.1_1_8:101487919-101488048:+|nuORF	REV__ENST00000521851.1_1_8:101487919-101488048:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.83837890625	2	575.288005	1148.56146	1.4014	0.00080621	3.0294	0.0017428	4.4308	0.002549	575.2891814736972	81.757	0.40762	81.757	81.654	82.061	0					15	9	2	0	0	0	0.027462	1	8458	8458		23.042	0	1	438460	+		12253	27078	10036	10048	13413	13413					-0.006880426707994047
FRICIFAVLI	10	Unmodified	_FRICIFAVLI_					0	0	0			REV__tr|A0A7D6VSQ1|A0A7D6VSQ1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11535PE=4SV=1	REV__tr|A0A7D6VSQ1|A0A7D6VSQ1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11535PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8562622070312	2	597.857012	1193.69947	-3.1766	-0.0018991	2.1305	0.0012737	-1.0461	-0.00062542	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.61209	1	14972	14972		40.573	4.9543	1	436470	+		12254	31529	10037	10049	13414	13414					0.11036989324111346
FRICIFAVLI	10	Unmodified	_FRICIFAVLI_					0	0	0			REV__tr|A0A7D6VSQ1|A0A7D6VSQ1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11535PE=4SV=1	REV__tr|A0A7D6VSQ1|A0A7D6VSQ1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11535PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8555297851562	2	597.857012	1193.69947	-0.38237	-0.0002286	-0.70561	-0.00042185	-1.088	-0.00065045	597.8564103488146	145.14	4.0194	143.71	141.51	145.53	-1.4357					229	77	4	0	0	0	0.64063	1	14194	14194		37.159	10.363	1	217250	+		12255	31529	10037	10049	13415	13415					0.11036989324111346
FRISNGREP	9	Unmodified	_FRISNGREP_					0	0	0		ENSG00000177051|ENST00000317683|FBXO46	ENSG00000177051|ENST00000317683|FBXO46	ENSG00000177051|ENST00000317683|FBXO46	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.2962036132812	2	538.285797	1074.55704	-0.80723	-0.00043452	-1.8166	-0.00097784	-2.6238	-0.0014124	538.7863625112569	61.964	0.67517	58.507	58.336	59.011	-3.4577					26	13	3	0	0	0	0.027462	1	4303	4303		41.427	27.973	1	58052			12256	7652	10038	10050	13416	13416					0.022744929062810115
FRKGFRTI	8	Unmodified	_FRKGFRTI_					0	0	0		ENSG00000182687|ENST00000329003|GALR2	ENSG00000182687|ENST00000329003|GALR2	ENSG00000182687|ENST00000329003|GALR2	MULTI-MSMS	OvCa9_classI_Rep3	3	512.806396484375	2	512.806168	1023.59778	0.48569	0.00024906	-1.8	-0.00092305	-1.3143	-0.00067399	512.8051194113467	130.74	1.1749	129.61	129.32	130.49	-1.1249					50	23	3	0	0	0	0.73626	1	10416	10416		33.516	1.9858	1	153750			12257	8018	10039	10051	13417	13417					0.08692879016552979
FRKGKALFE	9	Unmodified	_FRKGKALFE_					0	0	0			REV__nc|ENSG00000167670|Q13111-2|CHAF1A	REV__nc|ENSG00000167670|Q13111-2|CHAF1A	MULTI-MSMS	OvCa9_classI_Rep3	3	548.3176879882812	2	548.319109	1094.62366	-0.84164	-0.00046149	-3.3806	-0.0018536	-4.2222	-0.0023151	548.3171569301378	74.411	2.3795	72	71.151	73.531	-2.4106					140	47	5	0	0	0	0.64427	1	3703	3703		26.693	1.2427	1	1829400	+		12258	28984	10040	10052	13418	13418					0.0801372846817685
FRKKKKLV	8	Unmodified	_FRKKKKLV_					0	0	0		ENST00000601728.1_1_19:23309373-23309649:-|nuORF	ENST00000601728.1_1_19:23309373-23309649:-|nuORF	ENST00000601728.1_1_19:23309373-23309649:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.8410034179688	2	523.863486	1045.71242	2.3415	0.0012266	3.3537	0.0017569	5.6952	0.0029835	523.8644236113118	99.256	0.20994	99.256	99.195	99.405	0					6	4	2	0	0	0	0.028476	1	10972	10972		20.482	16.166	1	83755			12259	14227	10041	10053	13419	13419					0.19139188498502335
FRKKLKKLK	9	Unmodified	_FRKKLKKLK_					0	0	0			REV__tr|A0A7D6ZSF2|A0A7D6ZSF2_9CLOTMatrixinfamilymetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07525PE=4SV=1	REV__tr|A0A7D6ZSF2|A0A7D6ZSF2_9CLOTMatrixinfamilymetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07525PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	594.8532104492188	2	594.918793	1187.82303	-0.31053	-0.00018474	-0.30031	-0.00017866	-0.61085	-0.0003634	594.9189045448749	77.874	0.24522	75.521	75.402	75.647	-2.3527					6	4	2	0	0	0	0.027462	1	4103	4103		12.959	9.8	1	10529	+		12260	32183	10042	10054	13420	13420					0.23663408486731896
FRKKLKKLK	9	Unmodified	_FRKKLKKLK_					0	0	0			REV__tr|A0A7D6ZSF2|A0A7D6ZSF2_9CLOTMatrixinfamilymetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07525PE=4SV=1	REV__tr|A0A7D6ZSF2|A0A7D6ZSF2_9CLOTMatrixinfamilymetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07525PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	594.918793	1187.82303	0.39183	0.00023311	-4.5276	-0.0026936	-4.1358	-0.0024605	594.915825779112	78.201	0.14524	75.385	75.312	75.457	-2.8165	-0.068163	-0.003098	NaN	24.203	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12521	+		12261	32183	10042	10054							0.23663408486731896
FRKLHLVL	8	Unmodified	_FRKLHLVL_					0	0	0			REV__ENSG00000103194|ENST00000219473|USP10	REV__ENSG00000103194|ENST00000219473|USP10	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.6063232421875	2	513.334562	1024.65457	-0.36437	-0.00018705	-3.7626	-0.0019315	-4.127	-0.0021185	513.3324788978264	60.126	0.51608	60.126	59.918	60.434	0					26	12	3	0	0	0	0.028476	1	5250	5250		20.482	7.5226	1	507610	+		12262	17601	10043	10055	13421	13421					0.14322926573095174
FRKPGEKTF	9	Unmodified	_FRKPGEKTF_					0	0	0		ENSG00000147140|ENST00000276079|NONO;ENST00000566277.2_1_16:69791529-69791679:-|nuORF;ENST00000486613.6_1_X:70504267-70513876:+|nuORF	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-MSMS	OvCa99_classI_Rep5	1	555.3084106445312	2	555.308741	1108.60293	-0.25709	-0.00014276	-0.33265	-0.00018472	-0.58973	-0.00032748	555.308544509236	38.91	0.84414	38.91	38.619	39.463	0					54	18	4	0	0	0	0.024645	2	2254	2233;2254		141.52	64.746	1	6329000			12263	5334	10044	10056	13422;13423	13423					0.05297138088508291
FRKQLEEL	8	Unmodified	_FRKQLEEL_					0	0	0			REV__ENSG00000126067|ENST00000373237|PSMB2	REV__ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8004760742188	2	531.800749	1061.58694	-0.1228	-6.5303E-05	-0.13078	-6.9549E-05	-0.25358	-0.00013485	531.800515981788	118.08	1.1889	117.05	116.54	117.73	-1.0324					51	23	4	0	0	0	0.60331	1	8892	8892		63.306	3.188	1	254040	+		12264	18769	10045	10057	13424	13424					0.05861431851622001
FRKVDVDEY	9	Unmodified	_FRKVDVDEY_					0	0	0		ENSG00000162704|ENST00000359856|ARPC5;nc|ENSG00000162704|O15511-2|ARPC5	ENSG00000162704|ENST00000359856|ARPC5	ENSG00000162704|ENST00000359856|ARPC5	MULTI-MSMS	OvCa9_classI_Rep4_	4	585.7940673828125	2	585.793121	1169.57169	-0.30421	-0.0001782	0.14403	8.4373E-05	-0.16017	-9.3829E-05	585.7931552238615	64.726	1.7936	61.241	60.872	62.665	-3.4854					92	36	4	0	0	0	0.10502	4	4627	4615;4627;4639;4655		95.815	25.982	1	1141900			12265	6217	10046	10058	13425;13426;13427;13428	13426					-0.00631479736239271
FRKVDVDEY	9	Unmodified	_FRKVDVDEY_					0	0	0		ENSG00000162704|ENST00000359856|ARPC5;nc|ENSG00000162704|O15511-2|ARPC5	ENSG00000162704|ENST00000359856|ARPC5	ENSG00000162704|ENST00000359856|ARPC5	MULTI-MATCH	OvCa99_classI_Rep5	1		2	585.793121	1169.57169	-0.20342	-0.00011916	-3.5212	-0.0020627	-3.7246	-0.0021818	585.7912836394121	60.961	0.51513	60.961	60.73	61.245	0	-0.16809	-0.005135	NaN	95.815	29	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	461520			12266	6217	10046	10058							-0.00631479736239271
FRKVDVDEY	9	Unmodified	_FRKVDVDEY_					0	0	0		ENSG00000162704|ENST00000359856|ARPC5;nc|ENSG00000162704|O15511-2|ARPC5	ENSG00000162704|ENST00000359856|ARPC5	ENSG00000162704|ENST00000359856|ARPC5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	585.793121	1169.57169	-0.95583	-0.00055992	1.2106	0.00070916	0.25476	0.00014924	585.7936702811689	63.929	2.2369	61.185	60.586	62.823	-2.7444	0.055836	0.00040865	NaN	95.815	113	42	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	367240			12267	6217	10046	10058							-0.00631479736239271
FRKVGIPII	9	Unmodified	_FRKVGIPII_					0	0	0		nc|ENSG00000137648|Q9NRS4-2|TMPRSS4;nc|ENSG00000137648|Q9NRS4-3|TMPRSS4;ENSG00000137648|ENST00000437212|TMPRSS4	nc|ENSG00000137648|Q9NRS4-2|TMPRSS4	nc|ENSG00000137648|Q9NRS4-2|TMPRSS4	MULTI-MSMS	OvCa99_classI_Rep5	1	521.842529296875	2	521.84222	1041.66989	2.3717	0.0012376	0.93411	0.00048746	3.3058	0.0017251	521.8430830930207	90.123	0.25275	90.123	89.933	90.186	0					9	5	2	0	0	0	0.58665	1	9646	9646		33.516	0	1	5638800			12268	4604	10047	10059	13429	13429					0.15071793370293562
FRLARLFL	8	Unmodified	_FRLARLFL_					0	0	0			REV__ENSG00000108651|ENST00000261708|UTP6	REV__ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.3251953125	2	518.326737	1034.63892	-1.0284	-0.00053303	-3.175	-0.0016457	-4.2033	-0.0021787	518.3250657043614	70.688	2.5247	67.207	66.836	69.361	-3.4812					145	51	4	0	0	0	0.64026	1	5349	5349		55.504	7.5886	1	2922500	+		12269	17900	10048	10060	13430	13430					0.12298640056019394
FRLFGVRF	8	Unmodified	_FRLFGVRF_					0	0	0			REV__sp|Q6SW89|UL43_HCMVMTegumentproteinUL43OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL43PE=3SV=1	REV__sp|Q6SW89|UL43_HCMVMTegumentproteinUL43OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL43PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	521.301025390625	2	521.303262	1040.59197	-0.71731	-0.00037394	-3.611	-0.0018824	-4.3283	-0.0022564	521.3013451951931	49.755	2.2298	46.995	46.325	48.555	-2.7603					109	44	4	0	0	0	0.71369	3	3184	3184;3201;3215		40.573	5.3719	1	840970	+		12270	29430	10049	10061	13431;13432;13433	13431					0.07329780504892369
FRLGERSF	8	Unmodified	_FRLGERSF_					0	0	0		ENST00000496539.1_1_7:44157490-44163110:-|nuORF;ENST00000470867.5_1_7:44156819-44163110:-|nuORF;ENST00000463464.5_1_7:44156730-44161694:-|nuORF;ENSG00000106628|ENST00000610533|POLD2	ENST00000496539.1_1_7:44157490-44163110:-|nuORF	ENST00000496539.1_1_7:44157490-44163110:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	506.2735290527344	2	506.272158	1010.52976	1.7132	0.00086734	1.5295	0.00077434	3.2427	0.0016417	506.2727467608177	54.771	2.6321	51.6	50.779	53.411	-3.1715					173	88	3	0	0	0	0.74971	1	1422	1422		26.796	2.5934	1	154000			12271	2566	10050	10062	13434	13434					0.024920093659034137
FRLLLRFL	8	Unmodified	_FRLLLRFL_					0	0	0		CYP4F22|p.F349Lfs*21|1|0.04|ENSG00000171954|chr19:15544190-15544190|C/-|frameshift_variant;CYP4F22|p.M270Ffs*111|1|0.04|ENSG00000171954|chr19:15540585-15540586|-/TTTTTAAAAAATAATGGCTTTGTTGAGACACA|frameshift_variant;ENSG00000171954|ENST00000269703|CYP4F22	CYP4F22|p.F349Lfs*21|1|0.04|ENSG00000171954|chr19:15544190-15544190|C/-|frameshift_variant;REV__CYP4F22|p.F349Lfs*21|1|0.04|ENSG00000171954|chr19:15544190-15544190|C/-|frameshift_variant	CYP4F22|p.F349Lfs*21|1|0.04|ENSG00000171954|chr19:15544190-15544190|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	539.3536376953125	2	539.350212	1076.68587	2.2939	0.0012372	4.2849	0.0023111	6.5788	0.0035483	539.3523735364151	63.128	1.3441	60.094	59.756	61.1	-3.0339					58	26	3	0	0	0	0.74595	1	2368	2368		14.664	0	1	102560			12272	703;16263	10051	10063	13435	13435					0.15059499607195903
FRLLRRRQQRH	11	Unmodified	_FRLLRRRQQRH_					0	0	0		nc|ENSG00000165006|Q9NZ09-3|UBAP1;nc|ENSG00000165006|Q9NZ09-4|UBAP1	nc|ENSG00000165006|Q9NZ09-3|UBAP1	nc|ENSG00000165006|Q9NZ09-3|UBAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	522.650390625	3	522.650186	1564.92873	-1.121	-0.00058589	1.4474	0.00075651	0.32646	0.00017062	522.6509064348502	28.693	0.5481	28.693	28.439	28.987	0					29	10	5	0	0	0	0.72575	1	960	960		5.6988	2.0797	1	244450			12273	15152	10052	10064	13436	13436					0.16886137384904032
FRLRRRRQIMA	11	Unmodified	_FRLRRRRQIMA_					0	0	0		ENST00000292524.5_1_8:145748060-145748543:+|nuORF	ENST00000292524.5_1_8:145748060-145748543:+|nuORF	ENST00000292524.5_1_8:145748060-145748543:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	501.6336975097656	3	501.636889	1501.88884	-5.5139	-0.002766	-0.095564	-4.7939E-05	-5.6095	-0.0028139	501.63686894791874	162.29	1.9089	162.06	160.59	162.5	-0.22696					90	37	3	0	0	0	0.7257	1	16526	16526		6.3209	0.6221	1	106580			12274	10102	10053	10065	13437	13437					0.15796874390002813
FRLRRRRQIMA	11	Unmodified	_FRLRRRRQIMA_					0	0	0		ENST00000292524.5_1_8:145748060-145748543:+|nuORF	ENST00000292524.5_1_8:145748060-145748543:+|nuORF	ENST00000292524.5_1_8:145748060-145748543:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	501.6338195800781	3	501.636889	1501.88884	-7.1576	-0.0035905	1.5238	0.00076439	-5.6338	-0.0028261	501.63774554440306	163.54	2.3462	162.14	160.37	162.72	-1.3925					135	52	3	0	0	0	0.72507	5	14282	14167;14196;14201;14227;14282		14.694	5.4819	1	91935			12275	10102	10053	10065	13438;13439;13440;13441;13442	13442					0.15796874390002813
FRLSNKLKG	9	Unmodified	_FRLSNKLKG_					0	0	0		ENSG00000106346|ENST00000306177|USP42;nc|ENSG00000106346|Q9H9J4|USP42;ENST00000479544.6_1_7:6150764-6196715:+|nuORF;ENST00000521713.1_1_7:6179681-6199085:+|nuORF	ENSG00000106346|ENST00000306177|USP42	ENSG00000106346|ENST00000306177|USP42	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.8091430664062	2	531.824558	1061.63456	0.64528	0.00034318	2.5227	0.0013416	3.168	0.0016848	531.8256032441288	74.394	0.58308	74.394	74.135	74.718	0					27	14	3	0	0	0	0.027462	1	7354	7354		34.173	0	1	1681800			12276	2545	10054	10066	13443	13443					0.10621130842469029
FRLSVDGRSC	10	Unmodified	_FRLSVDGRSC_					0	0	0		nc|ENSG00000077942|P23142-4|FBLN1;ENST00000476366.1_1_22:45937122-45946826:+|nuORF;nc|ENSG00000077942|P23142-2|FBLN1;nc|ENSG00000077942|P23142-3|FBLN1;ENSG00000077942|ENST00000327858|FBLN1	nc|ENSG00000077942|P23142-4|FBLN1	nc|ENSG00000077942|P23142-4|FBLN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	570.2852172851562	2	570.28494	1138.55533	-0.76783	-0.00043788	1.0678	0.00060897	0.3	0.00017109	570.2854153844488	54.025	1.535	50.778	50.109	51.644	-3.2474					61	29	3	0	0	0	0.65849	1	3329	3329		35.152	0.97948	1	268810			12277	14894	10055	10067	13444	13444					-0.008408841739765194
FRLSVDGRSC	10	Unmodified	_FRLSVDGRSC_					0	0	0		nc|ENSG00000077942|P23142-4|FBLN1;ENST00000476366.1_1_22:45937122-45946826:+|nuORF;nc|ENSG00000077942|P23142-2|FBLN1;nc|ENSG00000077942|P23142-3|FBLN1;ENSG00000077942|ENST00000327858|FBLN1	nc|ENSG00000077942|P23142-4|FBLN1	nc|ENSG00000077942|P23142-4|FBLN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	570.28494	1138.55533	-1.714	-0.00097748	1.6574	0.00094517	-0.056654	-3.2309E-05	570.2857799089426	53.709	0.99464	50.895	50.479	51.473	-2.8139	0.058664	0.00030237	NaN	35.152	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68721			12278	14894	10055	10067							-0.008408841739765194
FRLVPNVRI	9	Unmodified	_FRLVPNVRI_					0	0	0		SH3RF2|p.I439Lfs*10|1|0.05|ENSG00000156463|chr5:146049237-146049238|-/CTGCACTCCT|frameshift_variant;ENSG00000156463|ENST00000359120|SH3RF2	SH3RF2|p.I439Lfs*10|1|0.05|ENSG00000156463|chr5:146049237-146049238|-/CTGCACTCCT|frameshift_variant	SH3RF2|p.I439Lfs*10|1|0.05|ENSG00000156463|chr5:146049237-146049238|-/CTGCACTCCT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.3086547851562	2	557.3482	1112.68185	-0.067268	-3.7491E-05	3.2458	0.001809	3.1785	0.0017715	557.8500243025996	38.908	0.7148	38.908	38.705	39.42	0					35	15	5	0	0	0	0.027462	1	2225	2225		44.117	14.967	1	362380			12279	5839	10056	10068	13445	13445					0.13001410113474776
FRMFFAPG	8	Unmodified	_FRMFFAPG_					0	0	0		tr|A0A7D6ZZ34|A0A7D6ZZ34_9CLOTGalactokinaseOS=ClostridiumintestinaleOX=36845GN=galKPE=3SV=1	tr|A0A7D6ZZ34|A0A7D6ZZ34_9CLOTGalactokinaseOS=ClostridiumintestinaleOX=36845GN=galKPE=3SV=1	tr|A0A7D6ZZ34|A0A7D6ZZ34_9CLOTGalactokinaseOS=ClostridiumintestinaleOX=36845GN=galKPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.77960205078125	2	486.741648	971.468743	0.89836	0.00043727	1.3764	0.00066994	2.2747	0.0011072	486.74219241562616	67.268	1.3767	63.777	63.198	64.574	-3.4902					57	27	4	0	0	0	0.028476	1	5024	5024		65.897	28.738	1	242210			12280	35942	10057	10069	13446	13446					-0.018132189378775365
FRMTLKVI	8	Unmodified	_FRMTLKVI_					0	0	0		ENST00000511685.5_2_4:183721546-183721825:+|nuORF	ENST00000511685.5_2_4:183721546-183721825:+|nuORF	ENST00000511685.5_2_4:183721546-183721825:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	503.7566223144531	2	504.307155	1006.59976	-1.5887	-0.00080118	3.2231	0.0016255	1.6345	0.00082427	504.30940450789865	53.701	0.89595	50.887	50.429	51.325	-2.8139					31	17	3	0	0	0	0.028476	1	3605	3605		40.573	1.7665	1	18329			12281	12986	10058	10070	13447	13447					0.09672171710167277
FRNEGIDL	8	Unmodified	_FRNEGIDL_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-MSMS	OvCa99_classI_Rep5	1	482.2493896484375	2	482.248349	962.482145	-0.22418	-0.00010811	3.5252	0.0017	3.301	0.0015919	482.2498504195837	47.513	0.99747	47.513	47.251	48.248	0					45	22	3	0	0	0	0.53531	1	3416	3416		73.975	0	1	1094400			12282	1326	10059	10071	13448	13448					-0.000596896249362544
FRNLLRLVH	9	Unmodified	_FRNLLRLVH_					0	0	0		ENST00000361189.6_1_5:108719181-108745589:-|nuORF	ENST00000361189.6_1_5:108719181-108745589:-|nuORF	ENST00000361189.6_1_5:108719181-108745589:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	584.3558349609375	2	584.359099	1166.70365	-4.6254	-0.0027029	-0.004648	-2.7161E-06	-4.6301	-0.0027056	584.3589865391973	145.25	4.5766	144.28	142.9	147.48	-0.97299					233	91	4	0	0	0	0.61208	1	12157	12157		30.504	4.9296	1	156220			12283	10786	10060	10072	13449	13449					0.1269621486203505
FRNLSNIKI	9	Unmodified	_FRNLSNIKI_					0	0	0			REV__tr|A0A553SHI3|A0A553SHI3_NIACI4-diphosphocytidyl-2-C-methyl-D-erythritolkinaseOS=NialliacirculansOX=1397GN=ispEPE=3SV=1	REV__tr|A0A553SHI3|A0A553SHI3_NIACI4-diphosphocytidyl-2-C-methyl-D-erythritolkinaseOS=NialliacirculansOX=1397GN=ispEPE=3SV=1	MSMS	OvCa99_classI_Rep5	1	552.83251953125	2	552.82984	1103.64513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.952	1	81.952	81.452	82.452	0								0	0	0	0.16872	1	8468	8468		54.776	0	1		+		12284	29805	10061	10073	13450	13450					0.09745113496887825
FRNRHTEA	8	Unmodified	_FRNRHTEA_					0	0	0			REV__ENST00000445747.1_1_X:118011894-118012802:-|nuORF	REV__ENST00000445747.1_1_X:118011894-118012802:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7884521484375	2	515.762489	1029.51043	-0.32494	-0.00016759	-3.5329	-0.0018221	-3.8578	-0.0019897	516.2619931196281	78.907	0.66563	76.155	76.038	76.703	-2.7514					17	13	2	0	0	0	0.028476	1	6418	6418		85.359	0	1	37864	+		12285	25892	10062	10074	13451	13451					-0.003149469250047332
FRNRRKILI	9	Unmodified	_FRNRRKILI_					0	0	0		nc|ENSG00000161847|Q8IY67|RAVER1;nc|ENSG00000161847|Q8IY67-2|RAVER1;ENSG00000161847|ENST00000617231|RAVER1;nc|ENSG00000161847|Q8IY67-3|RAVER1;ENST00000592208.5_1_19:10439781-10444183:-|nuORF	nc|ENSG00000161847|Q8IY67|RAVER1	nc|ENSG00000161847|Q8IY67|RAVER1	MULTI-MSMS	OvCa99_classI_Rep5	1	405.931640625	3	405.931408	1214.77239	0.1148	4.6601E-05	-0.12399	-5.0332E-05	-0.0091914	-3.7311E-06	405.9313435099257	43.651	1.3057	43.651	43.312	44.618	0					88	29	5	0	0	0	0.37135	1	2903	2903		54.776	13.35	1	3303700			12286	6140	10063	10075	13452	13452					0.17359879161745084
FRPARLIKLL	10	Unmodified	_FRPARLIKLL_					0	0	0		CACNA1A|p.A1664P|1|0.14|ENSG00000141837|chr19:13235691-13235691|C/G|missense_variant	CACNA1A|p.A1664P|1|0.14|ENSG00000141837|chr19:13235691-13235691|C/G|missense_variant	CACNA1A|p.A1664P|1|0.14|ENSG00000141837|chr19:13235691-13235691|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	409.6083679199219	3	409.608042	1225.8023	0.6889	0.00028218	-0.83931	-0.00034379	-0.15041	-6.161E-05	409.60766459120623	104.29	12.102	103.72	103.28	115.38	-0.57639					699	244	5	0	0	0	0.71173	1	10326	10326		29.17	0	1	1628000			12287	171	10064	10076	13453	13453					0.1984281810707671
FRPTLLLCW	9	Unmodified	_FRPTLLLCW_					0	0	0		ENSG00000154485|ENST00000368808|MMP21	ENSG00000154485|ENST00000368808|MMP21	ENSG00000154485|ENST00000368808|MMP21	MULTI-MSMS	OvCa99_classI_Rep5	1	574.8212280273438	2	574.817887	1147.62122	-0.35141	-0.000202	3.0898	0.0017761	2.7384	0.0015741	574.8195827942154	22.441	0.94571	22.441	22.3	23.246	0					38	20	2	0	0	0	0.59983	1	214	214		31.955	4.0726	1	67875			12288	5741	10065	10077	13454	13454					0.05331556738860854
FRQILALTG	9	Unmodified	_FRQILALTG_					0	0	0		ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21;chr15:64983593-64990090|416|10.67|0.66|4.01|-|ENST00000559677|SPG21,SPG21	ENSG00000090487|ENST00000204566|SPG21	ENSG00000090487|ENST00000204566|SPG21	MULTI-MSMS	OvCa9_classI_Rep3	3	509.8040771484375	2	509.805834	1017.59712	-1.3099	-0.00066782	-2.9211	-0.0014892	-4.231	-0.002157	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.6653	1	11171	11171		24.203	0	1	99460			12289	1840	10066	10078	13455	13455					0.08902039576832976
FRQLEPEP	8	Unmodified	_FRQLEPEP_					0	0	0			REV__CCDC87|p.E633Rfs*9|1|0.06|ENSG00000182791|chr11:66591120-66591120|T/-|frameshift_variant	REV__CCDC87|p.E633Rfs*9|1|0.06|ENSG00000182791|chr11:66591120-66591120|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.3143615722656	2	508.263999	1014.51345	-0.81989	-0.00041672	0.090259	4.5875E-05	-0.72963	-0.00037084	508.2640404243882	104.39	2.3253	103.81	102.68	105.01	-0.57639					67	46	3	0	0	0	0.028476	1	9637	9637		63.306	0	1	41314	+		12290	15752	10067	10079	13456	13456					0.006768834091303688
FRQLEPEP	8	Unmodified	_FRQLEPEP_					0	0	0			REV__CCDC87|p.E633Rfs*9|1|0.06|ENSG00000182791|chr11:66591120-66591120|T/-|frameshift_variant	REV__CCDC87|p.E633Rfs*9|1|0.06|ENSG00000182791|chr11:66591120-66591120|T/-|frameshift_variant	MULTI-MATCH	OvCa99_classI_Rep5	1		2	508.263999	1014.51345	-0.63021	-0.00032031	-0.030862	-1.5686E-05	-0.66107	-0.000336	508.2637016316223	103.58	0.12859	103.58	103.51	103.64	0	-0.13801	-0.00030917	NaN	63.306	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169260	+		12291	15752	10067	10079							0.006768834091303688
FRQRSNLLQH	10	Unmodified	_FRQRSNLLQH_					0	0	0		nc|ENSG00000099326|P28698-2|MZF1;ENST00000600004.1_1_19:59073441-59074896:-|nuORF;ENSG00000099326|ENST00000215057|MZF1	nc|ENSG00000099326|P28698-2|MZF1	nc|ENSG00000099326|P28698-2|MZF1	MULTI-MSMS	OvCa9_classI_Rep3	3	433.9100646972656	3	433.57406	1297.70035	1.7463	0.00075715	1.7268	0.0007487	3.4731	0.0015058	433.57473970684964	64.458	1.2134	61.465	61.242	62.456	-2.9933					51	23	3	0	0	0	0.70834	1	2498	2498		29.551	3.4874	1	102690			12292	1968	10068	10080	13457	13457					0.06340920017373719
FRRERRPSKPL	11	Unmodified	_FRRERRPSKPL_					0	0	0		ENST00000432205.5_1_12:6982003-6982834:-|nuORF;ENST00000523102.5_1_12:6982003-6982426:-|nuORF	ENST00000432205.5_1_12:6982003-6982834:-|nuORF	ENST00000432205.5_1_12:6982003-6982834:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	481.2820739746094	3	481.288143	1440.8426	-6.3383	-0.0030506	-2.8993	-0.0013954	-9.2377	-0.004446	481.2870113487174	158.36	2.5052	157.1	156.12	158.63	-1.267					137	61	3	0	0	0	0.72472	2	13681	13681;13690		19.263	9.6165	1	42599			12293	11806	10069	10081	13458;13459	13458					0.1398113275954529
FRREWCRYRWR	11	Unmodified	_FRREWCRYRWR_					0	0	0			REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF	REV__ENST00000328599.4_1_8:125463328-125463391:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.8294677734375	3	571.960032	1712.85827	-0.19802	-0.00011326	-4.0059	-0.0022912	-4.2039	-0.0024045	572.2930671225935	52.996	0.21514	52.996	52.828	53.043	0					5	4	2	0	0	0	0.026562	1	4183	4183		0.31226	0.31226	1	58508	+		12294	24510	10070	10082	13460	13460					0.03035096004919069
FRRIYKIKD	9	Unmodified	_FRRIYKIKD_					0	0	0			REV__tr|A0A7D6ZYK1|A0A7D6ZYK1_9CLOTDUF4003familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16625PE=4SV=1	REV__tr|A0A7D6ZYK1|A0A7D6ZYK1_9CLOTDUF4003familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16625PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8692016601562	2	619.87204	1237.72953	-3.8587	-0.0023919	-0.31006	-0.00019219	-4.1687	-0.0025841	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.69403	1	15334	15334		19.997	0	1	492670	+		12295	32379	10071	10083	13461	13461					0.1201706431365892
FRRKNLQAS	9	Unmodified	_FRRKNLQAS_					0	0	0		ENST00000541940.1_1_12:26384685-26424762:-|nuORF	ENST00000541940.1_1_12:26384685-26424762:-|nuORF	ENST00000541940.1_1_12:26384685-26424762:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	560.3237915039062	2	560.322714	1118.63087	-0.35358	-0.00019812	-0.38446	-0.00021542	-0.73804	-0.00041354	560.3223799250245	36.55	0.71861	36.55	36.304	37.023	0					33	15	4	0	0	0	0.35444	1	1934	1934		56.721	1.2168	1	778970			12296	13471	10072	10084	13462	13462					0.07630461068629302
FRRKRKRKSDV	11	Unmodified	_FRRKRKRKSDV_					0	0	0		ENSG00000168269|ENST00000306268|FOXI1	ENSG00000168269|ENST00000306268|FOXI1	ENSG00000168269|ENST00000306268|FOXI1	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.6343994140625	3	492.639176	1474.8957	-6.2176	-0.0030631	-3.6309	-0.0017887	-9.8485	-0.0048518	492.63727713835067	161.54	1.8887	159.91	158.52	160.4	-1.6239					108	42	3	0	0	0	0.72575	1	15954	15954		5.6988	0.28586	1	60954			12297	6885	10073	10085	13463	13463					0.17724510542211647
FRRNGRLL	8	Unmodified	_FRRNGRLL_					0	0	0			REV__chr6:132684505-132686599|237|10.84|0.61|4.15|-|1|TE_info:HAL1,HAL1_dup9460,L1,LINE,donor,+,132686599,132687118|VNN1,None|10	REV__chr6:132684505-132686599|237|10.84|0.61|4.15|-|1|TE_info:HAL1,HAL1_dup9460,L1,LINE,donor,+,132686599,132687118|VNN1,None|10	MULTI-MSMS	OvCa9_classI_Rep2	2	516.314208984375	2	516.314692	1030.61483	-4.2539	-0.0021964	2.7446	0.0014171	-1.5093	-0.00077928	516.3160035152533	156.4	1.1562	156.18	155.89	157.05	-0.22696					77	28	5	0	0	0	0.75241	1	15953	15953		25.45	2.4077	1	397210	+		12298	16069	10074	10086	13464	13464					0.10074799622361752
FRRPFVKT	8	Unmodified	_FRRPFVKT_					0	0	0			REV__ENST00000262053.7_1_12:51214365-51214533:+|nuORF	REV__ENST00000262053.7_1_12:51214365-51214533:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.7477416992188	2	525.813993	1049.61343	-1.5935	-0.00083788	-2.5772	-0.0013551	-4.1707	-0.002193	525.8124373428726	45.677	0.78433	42.638	42.438	43.223	-3.0385					27	14	3	0	0	0	0.028476	1	2375	2375		29.15	0	1	32007	+		12299	23966	10075	10087	13465	13465					0.09061165533626081
FRRSFRQLT	9	Unmodified	_FRRSFRQLT_					0	0	0		nc|ENSG00000166348|Q70EL1-7|USP54;ENSG00000166348|ENST00000687698|USP54;nc|ENSG00000166348|Q70EL1-6|USP54;ENST00000498143.5_1_10:75279553-75335416:-|nuORF;nc|ENSG00000166348|Q70EL1-4|USP54	nc|ENSG00000166348|Q70EL1-7|USP54	nc|ENSG00000166348|Q70EL1-7|USP54	MULTI-SECPEP	OvCa99_classI_Rep5	1	403.6784973144531	3	404.231634	1209.67307	1.1475	0.00046387	3.6668	0.0014822	4.8144	0.0019461	404.23320164247207	58.715	0.48861	58.715	58.363	58.852	0					15	11	2	0	0	0	0.027462	1	4961	4961		29.17	7.4843	1	421170			12300	6668	10076	10088	13466	13466					0.07662436476994117
FRRSQRRNIPR	11	Unmodified	_FRRSQRRNIPR_					0	0	0			REV__ENST00000436397.5_2_19:52901831-52904968:+|nuORF	REV__ENST00000436397.5_2_19:52901831-52904968:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	496.2940673828125	3	495.958908	1484.85489	-4.8163	-0.0023887	4.3088	0.002137	-0.50748	-0.00025169	495.96094978154576	162.14	1.4092	161.91	160.94	162.35	-0.22696					77	27	3	0	0	0	0.72548	1	16558	16558		9.2118	1.8705	1	83644	+		12301	25783	10077	10089	13467	13467					0.13186169222603894
FRRVPPTV	8	Unmodified	_FRRVPPTV_					0	0	0		ENSG00000108950|ENST00000592554|FAM20A;ENST00000226094.9_1_17:66537075-66550928:-|nuORF;ENST00000592847.1_1_17:66537075-66551874:-|nuORF	ENSG00000108950|ENST00000592554|FAM20A	ENSG00000108950|ENST00000592554|FAM20A	MULTI-MSMS	OvCa9_classI_Rep2	2	486.29156494140625	2	486.292894	970.571235	0.44909	0.00021839	-2.105	-0.0010236	-1.6559	-0.00080526	486.29178638170987	132.77	2.1161	132.55	132.23	134.34	-0.22696					105	42	3	0	0	0	0.7043	1	13254	13254		42.474	1.6963	1	834840			12302	2688	10078	10090	13468	13468					0.08477190125233847
FRSIVVFLV	9	Unmodified	_FRSIVVFLV_					0	0	0			REV__tr|A0A7D6VST4|A0A7D6VST4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18060PE=4SV=1	REV__tr|A0A7D6VST4|A0A7D6VST4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18060PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	540.333740234375	2	540.334227	1078.6539	0.71527	0.00038649	-0.87238	-0.00047138	-0.15711	-8.4892E-05	540.3335173912039	131.44	2.5576	130.32	129.91	132.47	-1.1249					119	51	4	0	0	0	0.6653	1	10536	10536		24.203	1.1603	1	239410	+		12303	31537	10079	10091	13469	13469					0.1177208713336313
FRSNGVQLL	9	Unmodified	_FRSNGVQLL_					0	0	0		UNC45A-IQGAP1|2|fusion;UNC45A-IQGAP1|1|fusion;ENST00000486253.1_1_15:91479504-91483847:+|nuORF;ENST00000553671.6_1_15:91478554-91486156:+|nuORF;ENST00000557212.5_1_15:91479504-91485975:+|nuORF;nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A	UNC45A-IQGAP1|2|fusion;nc|ENSG00000140553|Q9H3U1-2|UNC45A	UNC45A-IQGAP1|2|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	517.2943725585938	2	517.293091	1032.57163	1.7777	0.00091958	-0.16558	-8.5652E-05	1.6121	0.00083393	517.2929043610824	87.067	1.0335	87.067	86.637	87.671	0					53	24	4	0	0	0	0.2784	1	9196	9196		65.465	5.1714	1	5261400			12304	36292;4859	10080	10092	13470	13470					0.05664565054439663
FRTGFPKT	8	Unmodified	_FRTGFPKT_					0	0	0		ENST00000367577.6_2_1:181059300-181059528:+|nuORF	ENST00000367577.6_2_1:181059300-181059528:+|nuORF	ENST00000367577.6_2_1:181059300-181059528:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.2378845214844	2	477.263802	952.513051	-0.41056	-0.00019595	-0.45881	-0.00021897	-0.86937	-0.00041492	477.26300260885256	40.317	0.23143	40.317	40.2	40.432	0					6	4	2	0	0	0	0.028476	1	2431	2431		29.15	11.785	1	38722			12305	10848	10081	10093	13471	13471					0.0348950847994729
FRVGDLRSS	9	Unmodified	_FRVGDLRSS_					0	0	0		ENSG00000162728|ENST00000368088|KCNJ9	REV__nc|ENSG00000005700|Q9P2D0-2|IBTK	REV__nc|ENSG00000005700|Q9P2D0-2|IBTK	MULTI-MSMS	OvCa9_classI_Rep2	2	518.7796020507812	2	518.780348	1035.54614	1.0108	0.00052437	-1.3327	-0.00069137	-0.32192	-0.000167	518.7794953787475	41.419	1.2817	38.709	38.438	39.72	-2.7097					65	25	4	0	0	0	0.48324	1	2170	2170		44.117	5.3107	1	331240	+		12306	24946	10082	10094	13472	13472					0.029790905319941885
FRVGNVQEL	9	Unmodified	_FRVGNVQEL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	531.292724609375	2	531.290548	1060.56654	1.9247	0.0010226	-0.70506	-0.00037459	1.2196	0.00064797	531.2903293964418	87.278	3.4509	87.278	86.931	90.382	0					264	83	6	0	0	0	0.026923	6	9310	9215;9250;9280;9310;9340;9370		138.83	19.296	1	200480000			12307	6293	10083	10095	13473;13474;13475;13476;13477;13478	13476					0.03868261191814781
FRVIKDSTGKL	11	Unmodified	_FRVIKDSTGKL_					0	0	0		tr|A0A553SPJ4|A0A553SPJ4_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26530PE=4SV=1	tr|A0A553SPJ4|A0A553SPJ4_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26530PE=4SV=1	tr|A0A553SPJ4|A0A553SPJ4_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26530PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	632.3764038085938	2	632.374612	1262.73467	1.4837	0.00093827	-1.6917	-0.0010698	-0.20798	-0.00013152	632.3734812887993	85.768	1.6793	83.122	82.8	84.48	-2.6463					104	33	5	0	0	0	0.21928	1	7225	7225		96.665	24.422	1	726040			12308	34052	10084	10096	13479	13479					0.11381323385626274
FRVLVYLGL	9	Unmodified	_FRVLVYLGL_					0	0	0			REV__tr|A0A553STP4|A0A553STP4_NIACIProbablemembranetransporterproteinOS=NialliacirculansOX=1397GN=CEQ21_05385PE=3SV=1	REV__tr|A0A553STP4|A0A553STP4_NIACIProbablemembranetransporterproteinOS=NialliacirculansOX=1397GN=CEQ21_05385PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3311157226562	2	540.334227	1078.6539	-0.23133	-0.000125	-3.7921	-0.002049	-4.0235	-0.002174	540.3320015899856	111.49	0.84241	109.97	109.63	110.47	-1.5111					42	15	4	0	0	0	0.58665	1	10300	10300		33.516	1.5607	1	279660	+		12309	30991	10085	10097	13480	13480					0.11772087133385867
FRVRDQRMRWY	11	Unmodified	_FRVRDQRMRWY_					0	0	0			REV__ENSG00000066279|ENST00000367409|ASPM	REV__ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.32470703125	3	538.280771	1611.82048	-0.037298	-2.0077E-05	-0.92864	-0.00049987	-0.96594	-0.00051995	538.2806100285094	33.112	0.24646	33.112	32.989	33.236	0					8	4	2	0	0	0	0.026549	1	1501	1501		3.6191	0.40774	1	44057	+		12310	16812	10086	10098	13481	13481					0.03904585019472506
FRWPRLAL	8	Unmodified	_FRWPRLAL_					0	0	0			REV__ENST00000528802.1_1_11:64882996-64883265:+|nuORF	REV__ENST00000528802.1_1_11:64882996-64883265:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	529.8191528320312	2	529.816536	1057.61852	0.96359	0.00051053	4.3909	0.0023264	5.3545	0.0028369	529.8187111866282	66.395	1.017	63.449	63.214	64.231	-2.9459					45	19	3	0	0	0	0.74361	1	2730	2730		29.842	9.3597	1	173270	+		12311	27176	10087	10099	13482	13482					0.09201469396225548
FRYRSLKHFNY	11	Unmodified	_FRYRSLKHFNY_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN-WDR67|2|fusion;UTRN-WDR67|1|fusion;ENST00000475732.1_1_X:31196784-31201033:-|nuORF;nc|ENSG00000198947|P11532-18|DMD;nc|ENSG00000198947|P11532-9|DMD;nc|ENSG00000152818|P46939-4|UTRN;ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-14|DMD;nc|ENSG00000198947|P11532-17|DMD;nc|ENSG00000198947|P11532-2|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-12|DMD;nc|ENSG00000198947|P11532-15|DMD;nc|ENSG00000198947|P11532-6|DMD;nc|ENSG00000198947|P11532-7|DMD;nc|ENSG00000198947|P11532-8|DMD;nc|ENSG00000198947|P11532-16|DMD;nc|ENSG00000198947|P11532-13|DMD;nc|ENSG00000198947|P11532-5|DMD;nc|ENSG00000152818|P46939-3|UTRN	ENSG00000152818|ENST00000367545|UTRN;ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000152818|P46939-3|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.9560241699219	3	510.936999	1529.78917	-1.6294	-0.00083251	-0.58289	-0.00029782	-2.2123	-0.0011303	511.2717290320285	48.974	0.68052	45.849	45.587	46.268	-3.1249					14	12	2	0	0	0	0.026033	1	2719	2719		35.178	6.6015	1	11655			12312	5647;8914;15102	10088	10100	13483	13483					0.04546335257032297
FRYSLHLN	8	Unmodified	_FRYSLHLN_					0	0	0		nc|ENSG00000178150|Q8NC26-2|ZNF114;ENSG00000178150|ENST00000595607|ZNF114	nc|ENSG00000178150|Q8NC26-2|ZNF114	nc|ENSG00000178150|Q8NC26-2|ZNF114	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.33349609375	2	525.279983	1048.54541	1.651	0.00086724	-1.4682	-0.00077123	0.18277	9.6005E-05	525.2793223080575	128.66	0.42052	128.66	128.42	128.84	0					17	8	3	0	0	0	0.028476	1	14924	14924		51.335	13.524	1	103790			12313	7734	10089	10101	13484	13484					0.023082958829718336
FRYTIPLL	8	Unmodified	_FRYTIPLL_					0	0	0			REV__ENSG00000173581|ENST00000586790|CCDC106	REV__ENSG00000173581|ENST00000586790|CCDC106	MULTI-SECPEP	OvCa9_classI_Rep2	2	511.766845703125	2	511.805303	1021.59605	-0.55553	-0.00028433	-3.7265	-0.0019072	-4.282	-0.0021915	511.80326172683516	57.921	1.0496	55.129	54.526	55.576	-2.7921					40	20	3	0	0	0	0.028476	1	4087	4087		33.516	0	1	64908	+		12314	21787	10090	10102	13485	13485					0.08611825207947277
FRYTSFAI	8	Unmodified	_FRYTSFAI_					0	0	0		tr|A0A553SPV9|A0A553SPV9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_10880PE=4SV=1	tr|A0A553SPV9|A0A553SPV9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_10880PE=4SV=1	tr|A0A553SPV9|A0A553SPV9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_10880PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	502.76220703125	2	502.763635	1003.51272	1.2962	0.00065166	-2.0149	-0.001013	-0.71875	-0.00036136	502.76247959947113	61.457	2.958	58.389	57.803	60.761	-3.0685					131	69	3	0	0	0	0.62934	1	2181	2181		57.811	6.6186	1	112640			12315	34093	10091	10103	13486	13486					0.01110088760083272
FRYWRRFIYYY	11	Unmodified	_FRYWRRFIYYY_					0	0	0			REV__tr|A0A7D6VSH2|A0A7D6VSH2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06695PE=4SV=1	REV__tr|A0A7D6VSH2|A0A7D6VSH2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06695PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.3252563476562	3	578.296415	1731.86742	1.4241	0.00082358	-4.0834	-0.0023614	-2.6592	-0.0015378	578.6288955813908	133.53	0.27316	133.53	133.31	133.58	0					6	5	2	0	0	0	0.02656	1	15512	15512		1.4188	1.0473	1	56236	+		12316	31503	10092	10104	13487	13487					0.03075767842278765
FRYWRRFIYYY	11	Unmodified	_FRYWRRFIYYY_					0	0	0			REV__tr|A0A7D6VSH2|A0A7D6VSH2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06695PE=4SV=1	REV__tr|A0A7D6VSH2|A0A7D6VSH2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06695PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.330078125	3	578.296415	1731.86742	1.1679	0.0006754	-0.46003	-0.00026603	0.70788	0.00040936	578.6303880916538	130.42	1.5668	130.42	130.06	131.62	0					96	32	5	0	0	0	0.026549	1	15147	15147		1.523	0.10423	1	1349800	+		12317	31503	10092	10104	13488	13488					0.03075767842278765
FSAATAAPK	9	Unmodified	_FSAATAAPK_					0	0	0			REV__nc|ENSG00000104450|Q07617-2|SPAG1	REV__nc|ENSG00000104450|Q07617-2|SPAG1	MULTI-MSMS	OvCa99_classI_Rep5	1	432.23553466796875	2	432.23471	862.454868	-0.70253	-0.00030366	0.94168	0.00040703	0.23914	0.00010337	432.2349152236824	34.749	0.65879	34.749	34.539	35.198	0					34	13	4	0	0	0	0.31747	1	1699	1699		60.972	3.1607	1	556620	+		12318	17665	10093	10105	13489	13489					0.018138268346547193
FSACLMKLFL	10	Unmodified	_FSACLMKLFL_					0	0	0			REV__ENST00000314970.10_1_4:185580560-185587128:+|nuORF	REV__ENST00000314970.10_1_4:185580560-185587128:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	586.8153076171875	2	586.813956	1171.61336	-0.76555	-0.00044924	0.02456	1.4412E-05	-0.74099	-0.00043482	586.8125704744136	53.565	0.70081	53.565	53.347	54.048	0					28	16	3	0	0	0	0.65434	1	4272	4272		35.618	0	1	811050	+		12319	24390	10094	10106	13490	13490					0.034416614270867285
FSACLMKLFL	10	Unmodified	_FSACLMKLFL_					0	0	0			REV__ENST00000314970.10_1_4:185580560-185587128:+|nuORF	REV__ENST00000314970.10_1_4:185580560-185587128:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	586.813956	1171.61336	-0.76555	-0.00044924	0.02456	1.4412E-05	-0.74099	-0.00043482	586.8125704744136	53.565	0.70081	53.565	53.347	54.048	0	0	0	NaN	35.618	28	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	811050	+		12320	24390	10094	10106							0.034416614270867285
FSACVRSDVM	10	Carbamidomethyl (C),Oxidation (M)	_FSAC(Carbamidomethyl (C))VRSDVM(Oxidation (M))_	FSAC(1)VRSDVM	FSACVRSDVM(1)	FSAC(60)VRSDVM	FSACVRSDVM(60)	0	1	1		sp|P16788|UL97_HCMVASerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL97PE=1SV=1;sp|Q6SW46|UL97_HCMVMSerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL97PE=3SV=1	sp|P16788|UL97_HCMVASerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL97PE=1SV=1	sp|P16788|UL97_HCMVASerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL97PE=1SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	594.2633056640625	2	594.262816	1186.51108	0.03458	2.055E-05	2.6407	0.0015692	2.6752	0.0015898	594.2643504663625	98.82	1.1323	97.135	96.852	97.985	-1.685					73	21	4	0	0	0	0.45822	1	6632	6632		60.118	8.7828	1	642600			12321	32900	10095	10107	13491	13491	376	725			-0.07471656382472247
FSACVRSDVM	10	Carbamidomethyl (C),Oxidation (M)	_FSAC(Carbamidomethyl (C))VRSDVM(Oxidation (M))_					0	1	1		sp|P16788|UL97_HCMVASerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL97PE=1SV=1;sp|Q6SW46|UL97_HCMVMSerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL97PE=3SV=1	sp|P16788|UL97_HCMVASerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL97PE=1SV=1	sp|P16788|UL97_HCMVASerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL97PE=1SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	594.262816	1186.51108	-0.75977	-0.00045151	2.8669	0.0017037	2.1071	0.0012522	594.264454710546	98.242	1.4775	97.349	96.529	98.007	-0.89306	0.17566	0.00013648	NaN	60.118	72	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125960			12322	32900	10095	10107			376	725			-0.07471656382472247
FSAFITVLQMK	11	Unmodified	_FSAFITVLQMK_					0	0	0		nc|ENSG00000095319|Q5SRE5-2|NUP188;ENSG00000095319|ENST00000372577|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	nc|ENSG00000095319|Q5SRE5-2|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	MULTI-SECPEP	OvCa9_classI_Rep3	3	643.373291015625	2	642.854667	1283.69478	-1.287	-0.00082732	-2.8221	-0.0018142	-4.1091	-0.0026415	642.8528766878322	92.055	0.64088	90.031	89.584	90.225	-2.0241					21	12	3	0	0	0	0.025466	1	5778	5778		65.465	5.3471	1	91510			12323	1924	10096	10108	13492	13492					0.06428060390658175
FSAKVVLRTR	10	Unmodified	_FSAKVVLRTR_					0	0	0		ENST00000427540.1_1_1:222763273-222763709:+|nuORF	ENST00000427540.1_1_1:222763273-222763709:+|nuORF	ENST00000427540.1_1_1:222763273-222763709:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.2989501953125	2	588.864215	1175.71388	-0.4514	-0.00026581	-0.25019	-0.00014733	-0.70159	-0.00041314	588.864078462231	33.558	0.2467	33.558	33.434	33.681	0					6	4	2	0	0	0	0.026931	1	1537	1537		30.318	0	1	37666			12324	11757	10097	10109	13493	13493					0.13304777796611233
FSAMAHDALF	10	Unmodified	_FSAMAHDALF_					0	0	0		ENSG00000165195|ENST00000333590|PIGA	ENSG00000165195|ENST00000333590|PIGA	ENSG00000165195|ENST00000333590|PIGA	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.7929077148438	2	555.257859	1108.50117	2.2147	0.0012297	-2.3607	-0.0013108	-0.14604	-8.1087E-05	555.2561999394694	87.672	0.99765	87.672	87.257	88.255	0					31	23	2	0	0	0	0.026871	1	9348	9348		29.15	7.1897	1	305440			12325	6535	10098	10110	13494	13494					-0.04874476325562682
FSATLAYVKL	10	Unmodified	_FSATLAYVKL_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MULTI-MSMS	OvCa99_classI_Rep5	1	556.822021484375	2	556.82115	1111.62775	1.824	0.0010156	0.054474	3.0332E-05	1.8785	0.001046	556.8210790613065	112.22	0.91048	112.22	111.88	112.79	0					48	19	4	0	0	0	0.39172	1	12787	12787		69.628	0	1	1722500			12326	5360	10099	10111	13495	13495					0.07639773171217712
FSATMTDEVK	10	Unmodified	_FSATMTDEVK_					0	0	0		nc|ENSG00000124228|Q96GQ7|DDX27;DDX27|p.E703Dfs*18|1|0.04|ENSG00000124228|chr20:49242105-49242106|-/TTTGCAGCCCGTGGCTTCCTGTGTT|frameshift_variant;ENSG00000124228|ENST00000618172|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF	nc|ENSG00000124228|Q96GQ7|DDX27	nc|ENSG00000124228|Q96GQ7|DDX27	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.6091918945312	2	564.765714	1127.51688	0.28189	0.0001592	-3.7475	-0.0021165	-3.4656	-0.0019573	564.7635854624768	30.643	0.44757	30.643	30.383	30.831	0					18	8	3	0	0	0	0.027088	1	1190	1190		26.693	3.6504	1	89603			12327	14999	10100	10112	13496	13496					-0.041782345991805414
FSATQTRKV	9	Unmodified	_FSATQTRKV_					0	0	0		ENSG00000088205|ENST00000263239|DDX18;ENST00000476149.1_1_2:118582113-118584081:+|nuORF;DDX18|p.L362I|1|0.26|ENSG00000088205|chr2:117824586-117824586|C/A|missense_variant;ENST00000534547.1_1_11:130165680-130166253:+|nuORF	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MULTI-MSMS	OvCa99_classI_Rep5	1	519.290283203125	2	519.290548	1036.56654	-1.2895	-0.00066961	0.42352	0.00021993	-0.86596	-0.00044969	519.2907791745517	37.228	0.64481	37.228	36.931	37.576	0					27	13	3	0	0	0	0.070405	1	2021	2021		107.01	27.556	1	713930			12328	1783	10101	10113	13497	13497					0.04972261191801408
FSAVQREMDL	10	Unmodified	_FSAVQREMDL_					0	0	0			REV__tr|A0A7D7A3L8|A0A7D7A3L8_9CLOTIsoleucine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=ileSPE=3SV=1	REV__tr|A0A7D7A3L8|A0A7D7A3L8_9CLOTIsoleucine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=ileSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	598.2931518554688	2	598.29243	1194.57031	0.81317	0.00048651	-0.90904	-0.00054387	-0.095873	-5.736E-05	598.2916770172554	96.364	1.0518	93.938	93.659	94.711	-2.4256					57	20	4	0	0	0	0.38315	1	8507	8507		70.816	5.3508	1	429170	+		12329	32589	10102	10114	13498	13498					-0.019194370966260976
FSAVQREMDL	10	Unmodified	_FSAVQREMDL_					0	0	0			REV__tr|A0A7D7A3L8|A0A7D7A3L8_9CLOTIsoleucine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=ileSPE=3SV=1	REV__tr|A0A7D7A3L8|A0A7D7A3L8_9CLOTIsoleucine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=ileSPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	598.29243	1194.57031	0.61914	0.00037042	-1.2571	-0.00075211	-0.63795	-0.00038168	598.2915249646709	95.799	1.4581	93.97	93.682	95.14	-1.8286	0.036955	-0.0011693	NaN	70.816	69	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	364910	+		12330	32589	10102	10114							-0.019194370966260976
FSEGGERLL	9	Unmodified	_FSEGGERLL_					0	0	0		ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	504.262451171875	2	504.261456	1006.50836	2.0669	0.0010423	0.17686	8.9185E-05	2.2438	0.0011315	504.26136489076714	78.556	1.3012	78.556	78.093	79.394	0					70	31	4	0	0	0	0.060996	2	7952	7952;7978		112.41	10.868	1	6856900			12331	8272	10103	10115	13499;13500	13499					0.00536579546530902
FSEGGERLL	9	Unmodified	_FSEGGERLL_					0	0	0		ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	504.261456	1006.50836	-0.81988	-0.00041344	0.26522	0.00013374	-0.55466	-0.0002797	504.2616170989062	81.086	2.5685	78.764	78.337	80.906	-2.3226	0.10375	5.1951E-05	NaN	112.41	85	50	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236990			12332	8272	10103	10115							0.00536579546530902
FSEGIGRNI	9	Unmodified	_FSEGIGRNI_					0	0	0		tr|A0A7D6ZXD8|A0A7D6ZXD8_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22595PE=4SV=1	tr|A0A7D6ZXD8|A0A7D6ZXD8_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22595PE=4SV=1	tr|A0A7D6ZXD8|A0A7D6ZXD8_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22595PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.788818359375	2	496.761623	991.508694	0.37148	0.00018454	-0.79014	-0.00039251	-0.41865	-0.00020797	496.76129347262	72.144	0.78456	72.144	71.707	72.492	0					27	18	2	0	0	0	0.027448	1	6972	6972		35.618	0	1	553870			12333	35875	10104	10116	13501	13501					0.012599992663922421
FSEGTYALGRA	11	Unmodified	_FSEGTYALGRA_					0	0	0		ENST00000526084.1_1_11:7690735-7690984:-|nuORF	ENST00000526084.1_1_11:7690735-7690984:-|nuORF	ENST00000526084.1_1_11:7690735-7690984:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.8153076171875	2	586.290745	1170.56694	-0.76382	-0.00044782	-1.4385	-0.00084337	-2.2023	-0.0012912	586.2893296093823	53.283	0.69313	53.283	52.999	53.692	0					22	15	2	0	0	0	0.025466	1	4272	4272		56.434	19.987	1	290290			12334	13211	10105	10117	13502	13502					-0.011523638789867618
FSEGTYALGRA	11	Unmodified	_FSEGTYALGRA_					0	0	0		ENST00000526084.1_1_11:7690735-7690984:-|nuORF	ENST00000526084.1_1_11:7690735-7690984:-|nuORF	ENST00000526084.1_1_11:7690735-7690984:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	586.290745	1170.56694	-1.077	-0.00063145	3.8681	0.0022679	2.7911	0.0016364	586.2926105933885	56.181	0.69408	53.377	53.126	53.82	-2.804	0.063922	0.0010103	NaN	56.434	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15437			12335	13211	10105	10117							-0.011523638789867618
FSEGTYALGRA	11	Unmodified	_FSEGTYALGRA_					0	0	0		ENST00000526084.1_1_11:7690735-7690984:-|nuORF	ENST00000526084.1_1_11:7690735-7690984:-|nuORF	ENST00000526084.1_1_11:7690735-7690984:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	586.290745	1170.56694	-0.3052	-0.00017894	3.1236	0.0018313	2.8184	0.0016524	586.292500659642	56.574	0.96416	53.279	53.02	53.984	-3.2944	-0.033608	0.00013727	NaN	56.434	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107120			12336	13211	10105	10117							-0.011523638789867618
FSEIQRYPV	9	Unmodified	_FSEIQRYPV_					0	0	0		nc|ENSG00000178125|Q7Z4L9|PPP1R42	nc|ENSG00000178125|Q7Z4L9|PPP1R42	nc|ENSG00000178125|Q7Z4L9|PPP1R42	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.7796020507812	2	569.798206	1137.58186	2.5372	0.0014457	2.8085	0.0016003	5.3456	0.0030459	569.7995991045854	88.806	0.6165	88.806	88.426	89.043	0					30	14	4	0	0	0	0.027426	1	9449	9449		39.253	0	1	1188900			12337	15194	10106	10118	13503	13503					0.01857127988978391
FSEKLSLTN	9	Unmodified	_FSEKLSLTN_					0	0	0		ENSG00000198040|ENST00000539354|ZNF84	ENSG00000198040|ENST00000539354|ZNF84	ENSG00000198040|ENST00000539354|ZNF84	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.8215942382812	2	519.776939	1037.53933	1.5046	0.00078206	0.1484	7.7133E-05	1.653	0.0008592	520.2772744142387	134.11	0.23752	134.11	134.01	134.24	0					6	4	2	0	0	0	0.027462	1	15614	15614		12.207	0	1	15921			12338	8775	10107	10119	13504	13504					0.022057328607843374
FSEKNINL	8	Unmodified	_FSEKNINL_					0	0	0		tr|A0A7D6VQV7|A0A7D6VQV7_9CLOTBifunctionalchorismatemutase/prephenatedehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04775PE=4SV=1	tr|A0A7D6VQV7|A0A7D6VQV7_9CLOTBifunctionalchorismatemutase/prephenatedehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04775PE=4SV=1	tr|A0A7D6VQV7|A0A7D6VQV7_9CLOTBifunctionalchorismatemutase/prephenatedehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04775PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	482.76025390625	2	482.758549	963.502546	2.5788	0.0012449	-0.28926	-0.00013965	2.2895	0.0011053	482.7583115906984	75.806	1.0742	75.806	75.444	76.518	0					77	26	4	0	0	0	0.72731	1	7597	7597		37.812	0	1	13757000			12339	34872	10108	10120	13505	13505					0.01933481034848228
FSERGHRK	8	Unmodified	_FSERGHRK_					0	0	0			REV__tr|A0A553SIY1|A0A553SIY1_NIACICelldivisionproteinFtsXOS=NialliacirculansOX=1397GN=CEQ21_15715PE=3SV=1	REV__tr|A0A553SIY1|A0A553SIY1_NIACICelldivisionproteinFtsXOS=NialliacirculansOX=1397GN=CEQ21_15715PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.29437255859375	2	508.772857	1015.53116	0.33754	0.00017173	-0.3349	-0.00017039	0.0026368	1.3416E-06	508.7719768451454	37.858	0.89338	34.966	34.841	35.734	-2.8925					30	17	2	0	0	0	0.028476	1	1492	1492		47.916	9.1095	1	76962	+		12340	29946	10109	10121	13506	13506					0.024016434546638266
FSESTITIS	9	Unmodified	_FSESTITIS_					0	0	0		nc|ENSG00000051620|Q9Y5Z4-2|HEBP2;ENSG00000051620|ENST00000607197|HEBP2	nc|ENSG00000051620|Q9Y5Z4-2|HEBP2	nc|ENSG00000051620|Q9Y5Z4-2|HEBP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.722412109375	2	492.747847	983.481142	-0.92752	-0.00045703	-1.0122	-0.00049878	-1.9398	-0.00095581	492.7476359541158	50.398	0.21898	50.398	50.332	50.551	0					6	4	2	0	0	0	0.027462	1	3844	3844		21.96	0	1	121550			12341	1190	10110	10122	13507	13507					-0.01125948784499542
FSESVADDKM	10	Oxidation (M)	_FSESVADDKM(Oxidation (M))_		FSESVADDKM(1)		FSESVADDKM(85)	0	0	1		SYNE2|p.D6278V|1|0.05|ENSG00000054654|chr14:64212070-64212070|A/T|missense_variant	SYNE2|p.D6278V|1|0.05|ENSG00000054654|chr14:64212070-64212070|A/T|missense_variant	SYNE2|p.D6278V|1|0.05|ENSG00000054654|chr14:64212070-64212070|A/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	572.74462890625	2	572.744979	1143.4754	1.7585	0.0010072	-2.7027	-0.001548	-0.9442	-0.00054079	572.7433557863682	128.45	0.56381	128.45	128.23	128.79	0					33	11	4	0	0	0	0.26627	1	14884	14884		84.916	6.6517	1	550130			12342	32937	10111	10123	13508	13508		727			-0.0905941535850161
FSEVLQGTII	10	Unmodified	_FSEVLQGTII_					0	0	0			REV__FAM83B|p.S841Afs*9|1|0.07|ENSG00000168143|chr6:54941492-54941492|A/-|frameshift_variant	REV__FAM83B|p.S841Afs*9|1|0.07|ENSG00000168143|chr6:54941492-54941492|A/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.33154296875	2	553.808239	1105.60193	1.9363	0.0010723	0.13934	7.7169E-05	2.0756	0.0011495	553.8081394595055	106.78	0.61307	106.78	106.41	107.02	0					25	13	3	0	0	0	0.026714	1	12044	12044		35.152	0	1	644010	+		12343	21350	10112	10124	13509	13509					0.053348789289884735
FSEVYQLLY	9	Unmodified	_FSEVYQLLY_					0	0	0			REV__nc|ENSG00000138468|Q9BQF6-4|SENP7	REV__nc|ENSG00000138468|Q9BQF6-4|SENP7	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.3751831054688	2	581.294965	1160.57538	-0.56683	-0.0003295	-2.1393	-0.0012436	-2.7062	-0.0015731	581.2924381175334	43.014	0.47367	43.014	42.753	43.227	0					17	10	3	0	0	0	0.027462	1	2814	2814		21.96	0	1	48188	+		12344	19542	10113	10125	13510	13510					0.001511900376272024
FSFAKGRPGP	10	Unmodified	_FSFAKGRPGP_					0	0	0			REV__L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|188|1|anti-sense	REV__L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|188|1|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	532.2909545898438	2	532.287808	1062.56106	-0.93593	-0.00049818	3.5579	0.0018938	2.6219	0.0013956	532.2896086698356	69.818	0.53913	69.818	69.591	70.13	0					22	12	2	0	0	0	0.6104	1	6672	6672		40.778	1.972	1	2691300	+		12345	28368	10114	10126	13511	13511					0.03228582399992774
FSFAKGRPGP	10	Unmodified	_FSFAKGRPGP_					0	0	0			REV__L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|188|1|anti-sense	REV__L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|188|1|anti-sense	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	532.287808	1062.56106	-0.93593	-0.00049818	3.5579	0.0018938	2.6219	0.0013956	532.2896086698356	69.818	0.53913	69.818	69.591	70.13	0	0	0	NaN	40.778	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2691300	+		12346	28368	10114	10126							0.03228582399992774
FSFEAIKKL	9	Unmodified	_FSFEAIKKL_					0	0	0			REV__ENSG00000164151|ENST00000296564|ICE1	REV__ENSG00000164151|ENST00000296564|ICE1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2938232421875	2	541.815867	1081.61718	2.05	0.0011107	1.4278	0.00077362	3.4778	0.0018843	542.3187901605644	100.24	0.46091	100.24	99.984	100.44	0					15	10	2	0	0	0	0.027462	1	11075	11075		40.778	11.629	1	319000	+		12347	20949	10115	10127	13512	13512					0.07963790516805602
FSFFPDLL	8	Unmodified	_FSFFPDLL_					0	0	0		ENSG00000163646|ENST00000327047|CLRN1;nc|ENSG00000163646|P58418-4|CLRN1	ENSG00000163646|ENST00000327047|CLRN1	ENSG00000163646|ENST00000327047|CLRN1	MULTI-MSMS	OvCa99_classI_Rep5	1	493.2558288574219	2	493.255111	984.49567	1.7779	0.00087698	-4.0366	-0.001991	-2.2586	-0.0011141	493.25302845616795	128.6	0.60605	128.6	128.37	128.98	0					19	12	2	0	0	0	0.65582	1	14918	14918		52.299	0.96372	1	206220			12348	6341	10116	10128	13513	13513					0.002801681542791812
FSFILHKYLV	10	Unmodified	_FSFILHKYLV_					0	0	0		L1ME1_dup14741|chr8:25510836-25512219:-|1.7462564563017426|0.2188578600898351|3.0|428.0|72|1|anti-sense	L1ME1_dup14741|chr8:25510836-25512219:-|1.7462564563017426|0.2188578600898351|3.0|428.0|72|1|anti-sense	L1ME1_dup14741|chr8:25510836-25512219:-|1.7462564563017426|0.2188578600898351|3.0|428.0|72|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	422.1864013671875	3	422.91302	1265.71723	-0.58085	-0.00024565	-1.472	-0.00062254	-2.0529	-0.00086819	422.9122919514142	49.996	0.82972	49.996	49.679	50.509	0					49	18	4	0	0	0	0.027142	1	3839	3839		15.333	0	1	634760			12349	14615	10117	10129	13514	13514					0.09500027850594961
FSFKVSRW	8	Unmodified	_FSFKVSRW_					0	0	0		ENSG00000123171|ENST00000242819|CCDC70	ENSG00000123171|ENST00000242819|CCDC70	ENSG00000123171|ENST00000242819|CCDC70	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.8308715820312	2	528.784902	1055.55525	-0.25433	-0.00013449	-1.3333	-0.00070502	-1.5876	-0.00083951	528.7825032166509	82.756	1.2373	81.157	80.54	81.778	-1.5989					32	24	2	0	0	0	0.028476	1	7063	7063		45.952	0	1	68182			12350	3581	10118	10130	13515	13515					0.029694838883187913
FSFSQASLN	9	Unmodified	_FSFSQASLN_					0	0	0			REV__tr|A0A7D6VRN2|A0A7D6VRN2_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12850PE=4SV=1	REV__tr|A0A7D6VRN2|A0A7D6VRN2_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12850PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.76422119140625	2	500.740357	999.46616	-0.68801	-0.00034451	-1.5731	-0.00078773	-2.2612	-0.0011322	500.740228504081	41.638	0.25875	41.638	41.55	41.809	0					8	5	2	0	0	0	0.027462	1	2608	2608		35.618	10.168	1	57826	+		12351	31430	10119	10131	13516	13516					-0.033593958618666875
FSFVSPIYF	9	Unmodified	_FSFVSPIYF_					0	0	0			REV__ENSG00000205495|ENST00000380370|OR52J3	REV__ENSG00000205495|ENST00000380370|OR52J3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.8038330078125	2	553.781493	1105.54843	-0.042373	-2.3465E-05	0.43505	0.00024093	0.39268	0.00021746	553.7813543640075	102.98	0.83823	100.78	100.31	101.14	-2.1994					20	15	2	0	0	0	0.027462	1	9246	9246		18.324	0	1	20825	+		12352	23218	10120	10132	13517	13517					-0.00011873782909788133
FSFVSPIYF	9	Unmodified	_FSFVSPIYF_					0	0	0			REV__ENSG00000205495|ENST00000380370|OR52J3	REV__ENSG00000205495|ENST00000380370|OR52J3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	553.781493	1105.54843	-1.0072	-0.00055779	1.8215	0.0010087	0.81423	0.00045091	553.7820008883666	102.34	0.46716	100.81	100.63	101.1	-1.5211	0.01529	0.00088212	NaN	18.324	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27588	+		12353	23218	10120	10132							-0.00011873782909788133
FSGFLRRE	8	Unmodified	_FSGFLRRE_					0	0	0			REV__nc|ENSG00000128563|Q9H875-2|PRKRIP1	REV__nc|ENSG00000128563|Q9H875-2|PRKRIP1	MULTI-MSMS	OvCa9_classI_Rep3	3	506.27374267578125	2	506.272158	1010.52976	1.7132	0.00086734	1.5295	0.00077434	3.2427	0.0016417	506.2727467608177	54.771	2.6321	51.6	50.779	53.411	-3.1715					173	88	3	0	0	0	0.71369	1	1449	1449		40.573	1.7665	1	154000	+		12354	28839	10121	10133	13518	13518					0.02492009365892045
FSGKLYLI	8	Unmodified	_FSGKLYLI_					0	0	0		ENST00000531840.1_1_11:2417722-2418004:+|nuORF;ENST00000481386.1_1_11:2417722-2418093:+|nuORF;ENST00000468153.1_1_11:2416081-2418093:+|nuORF;ENSG00000110651|ENST00000263645|CD81	ENST00000531840.1_1_11:2417722-2418004:+|nuORF	ENST00000531840.1_1_11:2417722-2418004:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	470.7802734375	2	470.778754	939.542954	2.397	0.0011284	-0.21732	-0.00010231	2.1796	0.0010261	470.77850070251344	107.43	0.88182	107.43	107.14	108.03	0					45	20	3	0	0	0	0.36941	1	12119	12119		94.006	11.701	1	1984500			12355	2785	10122	10134	13519	13519					0.07076447425265542
FSGLAVLVTR	10	Unmodified	_FSGLAVLVTR_					0	0	0		ENST00000494087.5_1_13:45780977-45781184:+|nuORF	ENST00000494087.5_1_13:45780977-45781184:+|nuORF	ENST00000494087.5_1_13:45780977-45781184:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8168334960938	2	531.818941	1061.62333	0.089047	4.7357E-05	-3.7428	-0.0019905	-3.6538	-0.0019431	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.71173	1	13832	13832		29.17	3.7199	1	263230			12356	12749	10123	10135	13520	13520					0.09498308748334239
FSGNPIKV	8	Unmodified	_FSGNPIKV_					0	0	0		ENSG00000089280|ENST00000254108|FUS;nc|ENSG00000089280|P35637-2|FUS;ENST00000487509.6_1_16:31199536-31202756:+|nuORF	ENSG00000089280|ENST00000254108|FUS	ENSG00000089280|ENST00000254108|FUS	MULTI-MSMS	OvCa9_classI_Rep4_	4	431.24468994140625	2	431.245078	860.475603	0.87705	0.00037822	-1.1018	-0.00047513	-0.22473	-9.6912E-05	431.24445032129745	75.992	0.90138	73.053	72.79	73.691	-2.9389					40	18	3	0	0	0	0.65267	1	6015	6015		52.937	1.6012	1	236350			12357	1819	10124	10136	13521	13521					0.03978417214341334
FSGNPIKV	8	Unmodified	_FSGNPIKV_					0	0	0		ENSG00000089280|ENST00000254108|FUS;nc|ENSG00000089280|P35637-2|FUS;ENST00000487509.6_1_16:31199536-31202756:+|nuORF	ENSG00000089280|ENST00000254108|FUS	ENSG00000089280|ENST00000254108|FUS	MULTI-MATCH	OvCa9_classI_Rep2	2		2	431.245078	860.475603	-0.92516	-0.00039897	1.0449	0.00045063	0.11978	5.1654E-05	431.24537762197986	75.07	1.1834	73.099	72.586	73.77	-1.9711	0.023016	0.000756	NaN	52.937	44	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70051			12358	1819	10124	10136							0.03978417214341334
FSGRSPLLLL	10	Unmodified	_FSGRSPLLLL_					0	0	0			REV__ENST00000310455.3_1_8:8997372-8997567:-|nuORF	REV__ENST00000310455.3_1_8:8997372-8997567:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.301513671875	2	551.834591	1101.65463	1.82	0.0010044	-1.0232	-0.00056461	0.79688	0.00043975	551.834212928977	115.49	0.23688	115.49	115.3	115.54	0					6	4	2	0	0	0	0.027117	1	13177	13177		6.3127	0	1	40910	+		12359	24342	10125	10137	13522	13522					0.10786881782428281
FSGTKQQEIV	10	Unmodified	_FSGTKQQEIV_					0	0	0		SF3B3-DDX19B|3|fusion;SF3B3-DDX19B|2|fusion;nc|ENSG00000189091|Q15393-2|SF3B3;ENSG00000189091|ENST00000302516|SF3B3;SF3B3|p.K976Dfs*14|1|0.12|ENSG00000189091|chr16:70567509-70567510|-/GACTATTTTACCATAATTTTTA|frameshift_variant;SF3B3-DDX19B|4|fusion;SF3B3-DDX19B|1|fusion	SF3B3-DDX19B|3|fusion;ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OvCa99_classI_Rep5	1	568.8019409179688	2	568.800946	1135.58734	1.9911	0.0011326	0.3231	0.00018378	2.3142	0.0013163	568.8010743903886	91.989	1.2199	91.989	91.415	92.635	0					68	28	4	0	0	0	0.40664	1	9974	9974		67.494	11.06	1	6183900			12360	8533;32815	10126	10138	13523	13523					0.02496806780800398
FSGVSAVMPI	10	Unmodified	_FSGVSAVMPI_					0	0	0			REV__nc|ENSG00000022567|Q5BKX6-2|SLC45A4	REV__nc|ENSG00000022567|Q5BKX6-2|SLC45A4	MULTI-MSMS	OvCa99_classI_Rep5	1	504.2654724121094	2	504.265153	1006.51575	2.0545	0.001036	-2.6256	-0.001324	-0.57103	-0.00028795	504.26372126052865	118	0.97766	118	117.46	118.44	0					52	20	4	0	0	0	0.49049	1	13501	13501		55.504	7.8469	1	1205500	+		12361	16348	10127	10139	13524	13524					0.012755958225966424
FSHAEINAIIK	11	Unmodified	_FSHAEINAIIK_					0	0	0		ENST00000560291.2_1_15:52152484-52153489:-|nuORF	ENST00000560291.2_1_15:52152484-52153489:-|nuORF	ENST00000560291.2_1_15:52152484-52153489:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.898681640625	3	414.89955	1241.67682	-0.61426	-0.00025485	-2.8509	-0.0011828	-3.4651	-0.0014377	414.89833538585395	40.717	2.0295	37.763	37.213	39.242	-2.9541					105	38	5	0	0	0	0.66539	1	1761	1761		38.714	4.6276	1	1295000			12362	13732	10128	10140	13525	13525					0.06565061460173638
FSHCLVPGIL	10	Unmodified	_FSHCLVPGIL_					0	0	0			REV__ENST00000533277.5_1_11:66613305-66613563:+|nuORF	REV__ENST00000533277.5_1_11:66613305-66613563:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.9375	2	543.294245	1084.57394	-1.6366	-0.00088914	2.827	0.0015359	1.1904	0.00064673	543.2936746865979	45.14	0.25892	42.101	41.919	42.178	-3.0385					6	4	2	0	0	0	0.026697	1	2273	2273		37.159	19.794	1	13252	+		12363	21794	10129	10141	13526	13526					0.035032774678711576
FSHGGQSACLL	11	Unmodified	_FSHGGQSACLL_					0	0	0			REV__ENST00000464690.5_1_3:120129559-120169830:-|nuORF	REV__ENST00000464690.5_1_3:120129559-120169830:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	560.2665405273438	2	560.266216	1118.51788	1.6235	0.00090958	-2.9374	-0.0016457	-1.3139	-0.00073612	560.264521520652	142.84	2.0644	142.84	142.44	144.5	0					90	41	3	0	0	0	0.23673	1	16717	16717		75.043	3.7476	1	3077300	+		12364	26154	10130	10142	13527	13527					-0.036639754395991986
FSHVKKKW	8	Unmodified	_FSHVKKKW_					0	0	0		nc|ENSG00000064787|O75363-2|BCAS1	nc|ENSG00000064787|O75363-2|BCAS1	nc|ENSG00000064787|O75363-2|BCAS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2857666015625	2	530.308544	1058.60253	2.5242	0.0013386	1.8332	0.00097219	4.3575	0.0023108	530.309760153079	75.884	0.23322	75.884	75.723	75.956	0					9	5	2	0	0	0	0.028476	1	7579	7579		33.516	14.412	1	325110			12365	14883	10131	10143	13528	13528					0.0755776315932053
FSHWLYVT	8	Unmodified	_FSHWLYVT_					0	0	0			REV__ENST00000281830.3_1_2:223918500-223918569:+|nuORF	REV__ENST00000281830.3_1_2:223918500-223918569:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	526.76220703125	2	526.763635	1051.51272	0.69507	0.00036614	-1.7702	-0.00093246	-1.0751	-0.00056632	526.7626305368649	121.64	1.7818	120.61	120.22	122	-1.0286					87	33	4	0	0	0	0.65582	1	9353	9353		52.299	0.96372	1	598650	+		12366	24116	10132	10144	13529	13529					-0.010979112399127189
FSIANRSSIK	10	Unmodified	_FSIANRSSIK_					0	0	0		nc|ENSG00000163814|Q9H5V8-3|CDCP1;nc|ENSG00000163814|Q9H5V8-2|CDCP1;ENSG00000163814|ENST00000296129|CDCP1	nc|ENSG00000163814|Q9H5V8-3|CDCP1	nc|ENSG00000163814|Q9H5V8-3|CDCP1	MULTI-MSMS	OvCa99_classI_Rep5	1	561.8217163085938	2	561.81693	1121.61931	2.4263	0.0013631	2.7722	0.0015575	5.1985	0.0029206	561.8185729824205	108.74	2.4089	108.74	107.9	110.31	0					132	54	4	0	0	0	0.6349	1	12241	12241		37.812	2.1932	1	3717600			12367	6363	10133	10145	13530	13530					0.06336219254603748
FSIEMEKV	8	Unmodified	_FSIEMEKV_					0	0	0		NCOA4|p.R517Gfs*12|1|0.42|ENSG00000266412|chr10:46010372-46010373|-/CC|frameshift_variant;ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-4|NCOA4	NCOA4|p.R517Gfs*12|1|0.42|ENSG00000266412|chr10:46010372-46010373|-/CC|frameshift_variant	NCOA4|p.R517Gfs*12|1|0.42|ENSG00000266412|chr10:46010372-46010373|-/CC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	491.7511291503906	2	491.749336	981.484119	1.1062	0.00054397	0.7888	0.00038789	1.895	0.00093186	491.7496608965283	93.525	0.53599	93.525	93.305	93.841	0					28	12	3	0	0	0	0.55617	1	10139	10139		71.877	0.58177	1	2610700			12368	9528	10134	10146	13531	13531					-0.007363969313587404
FSIGKVKRKP	10	Unmodified	_FSIGKVKRKP_					0	0	0		NCK1-IL20RB|2|fusion;nc|ENSG00000158092|P16333-2|NCK1	NCK1-IL20RB|2|fusion	NCK1-IL20RB|2|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.336181640625	2	580.369133	1158.72371	-1.3827	-0.00080245	4.3662	0.002534	2.9835	0.0017315	580.3716489278419	104.56	0.12804	104.56	104.45	104.58	0					4	2	2	0	0	0	0.026826	1	11722	11722		11.636	0	1	134740			12369	15121	10135	10147	13532	13532					0.15069965801990293
FSIGLVVPIL	10	Unmodified	_FSIGLVVPIL_					0	0	0			REV__tr|A0A553SKU6|A0A553SKU6_NIACIDUF1385domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_19415PE=4SV=1	REV__tr|A0A553SKU6|A0A553SKU6_NIACIDUF1385domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_19415PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	529.3356323242188	2	529.336436	1056.65832	1.2484	0.0006608	-4.4143	-0.0023366	-3.1659	-0.0016758	529.3335476420067	123.24	1.3997	122.2	121.89	123.29	-1.0377					61	26	4	0	0	0	0.58282	1	9528	9528		44.117	6.9577	1	115190	+		12370	30153	10136	10148	13533	13533					0.13225551556274695
FSIGSGLID	9	Unmodified	_FSIGSGLID_					0	0	0			REV__nc|ENSG00000188566|Q9UHB4-3|NDOR1	REV__nc|ENSG00000188566|Q9UHB4-3|NDOR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	453.7651062011719	2	454.739825	907.465098	-0.67556	-0.00030721	4.4708	0.002033	3.7952	0.0017258	454.7415897858937	66.018	0.26815	66.018	65.867	66.136	0					14	6	3	0	0	0	0.027448	1	6086	6086		27.882	4.8398	1	495450	+		12371	22719	10137	10149	13534	13534					0.007663897692395949
FSIGSGLID	9	Unmodified	_FSIGSGLID_					0	0	0			REV__nc|ENSG00000188566|Q9UHB4-3|NDOR1	REV__nc|ENSG00000188566|Q9UHB4-3|NDOR1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	454.739825	907.465098	0.55448	0.00025214	2.0326	0.0009243	2.5871	0.0011764	454.7404502713106	68.713	0.79517	66.093	65.77	66.565	-2.6203	0.075917	-0.00098101	NaN	34.173	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29110	+		12372	22719	10137	10149							0.007663897692395949
FSIGSGLID	9	Unmodified	_FSIGSGLID_					0	0	0			REV__nc|ENSG00000188566|Q9UHB4-3|NDOR1	REV__nc|ENSG00000188566|Q9UHB4-3|NDOR1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	454.739825	907.465098	0.74891	0.00034056	3.0859	0.0014033	3.8349	0.0017439	454.74103292011	68.905	0.99799	66.091	65.813	66.811	-2.8144	0.074128	-2.3014E-05	NaN	34.173	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18801	+		12373	22719	10137	10149							0.007663897692395949
FSIGSGLID	9	Unmodified	_FSIGSGLID_					0	0	0			REV__nc|ENSG00000188566|Q9UHB4-3|NDOR1	REV__nc|ENSG00000188566|Q9UHB4-3|NDOR1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	454.739825	907.465098	-0.20982	-9.5412E-05	2.7577	0.001254	2.5479	0.0011586	454.74100236544797	69.347	0.87628	65.865	65.614	66.49	-3.4812	-0.15134	-0.00032157	NaN	34.173	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99748	+		12374	22719	10137	10149							0.007663897692395949
FSIIVWII	8	Unmodified	_FSIIVWII_					0	0	0		tr|A0A7D7A1K8|A0A7D7A1K8_9CLOTTIGR03987familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15780PE=4SV=1	tr|A0A7D7A1K8|A0A7D7A1K8_9CLOTTIGR03987familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15780PE=4SV=1	tr|A0A7D7A1K8|A0A7D7A1K8_9CLOTTIGR03987familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15780PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	495.8031921386719	2	495.804771	989.59499	-0.76596	-0.00037977	-3.405	-0.0016882	-4.171	-0.002068	495.8028976709344	116.21	1.7313	115.17	114.9	116.63	-1.0414					66	34	3	0	0	0	0.61758	1	8684	8684		60.294	4.7898	1	142870			12375	36040	10138	10150	13535	13535					0.09977610839030149
FSIKKPMKV	9	Unmodified	_FSIKKPMKV_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000037665	REV__CON__ENSEMBL:ENSBTAP00000037665	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.24560546875	2	539.328088	1076.64162	1.1753	0.00063389	0.55127	0.00029731	1.7266	0.0009312	539.3284321192107	80.957	1.9938	80.957	80.443	82.437	0					75	47	3	0	0	0	0.027411	1	8455	8455		54.776	7.119	1	8072000	+	+	12376	16177	10139	10151	13536	13536					0.10636727398673429
FSISPSRR	8	Unmodified	_FSISPSRR_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.30029296875	2	475.264333	948.514114	0.70237	0.00033381	-2.4466	-0.0011628	-1.7443	-0.00082899	475.2632202854541	66.142	1.1422	63.446	63.022	64.164	-2.6958					37	22	3	0	0	0	0.028476	1	5069	5069		44.117	12.162	1	102960			12377	5987	10140	10152	13537	13537					0.037797228488557266
FSIVYAATVL	10	Unmodified	_FSIVYAATVL_					0	0	0		nc|ENSG00000176290|Q96R72|OR4K3	nc|ENSG00000176290|Q96R72|OR4K3	nc|ENSG00000176290|Q96R72|OR4K3	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.77978515625	2	542.307875	1082.6012	2.7853	0.0015105	-1.3321	-0.0007224	1.4532	0.00078808	542.306897065662	100.94	0.5446	100.94	100.73	101.27	0					23	12	2	0	0	0	0.026956	1	11236	11236		42.396	7.1954	1	723350			12378	15190	10141	10153	13538	13538					0.06320084279900584
FSKEEKVS	8	Unmodified	_FSKEEKVS_					0	0	0		nc|ENSG00000197177|Q86SQ6-1|ADGRA1	nc|ENSG00000197177|Q86SQ6-1|ADGRA1	nc|ENSG00000197177|Q86SQ6-1|ADGRA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.238037109375	2	477.250557	952.486562	-0.40257	-0.00019212	0.9361	0.00044675	0.53353	0.00025463	477.2505288730544	40.331	0.32535	40.331	40.2	40.526	0					8	6	2	0	0	0	0.028476	1	2453	2453		31.955	0	1	23819			12379	15248	10142	10154	13539	13539					0.008417747979478918
FSKEFFQQV	9	Unmodified	_FSKEFFQQV_					0	0	0			REV__ENSG00000182645|ENST00000333254|CCDC172	REV__ENSG00000182645|ENST00000333254|CCDC172	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.9786376953125	2	580.292756	1158.57096	-2.3999	-0.0013926	-0.26236	-0.00015225	-2.6622	-0.0015449	580.2926339293307	103.83	0.59472	103.83	103.6	104.19	0					22	13	2	0	0	0	0.027459	1	11634	11634		29.17	0	1	480560	+		12380	22307	10143	10155	13540	13540					-0.001982743853204738
FSKEKGSI	8	Unmodified	_FSKEKGSI_					0	0	0		nc|ENSG00000118690|Q8NEN0-2|ARMC2;ENSG00000118690|ENST00000392644|ARMC2	nc|ENSG00000118690|Q8NEN0-2|ARMC2	nc|ENSG00000118690|Q8NEN0-2|ARMC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	447.263427734375	2	448.247818	894.481082	-0.66862	-0.00029971	-3.2323	-0.0014489	-3.9009	-0.0017486	448.24724525995765	43.465	0.42101	40.458	40.22	40.641	-3.0074					12	7	2	0	0	0	0.028476	1	2087	2087		27.882	7.4004	1	8285			12381	3320	10144	10156	13541	13541					0.029620960061379265
FSKEKGSI	8	Unmodified	_FSKEKGSI_					0	0	0		nc|ENSG00000118690|Q8NEN0-2|ARMC2;ENSG00000118690|ENST00000392644|ARMC2	nc|ENSG00000118690|Q8NEN0-2|ARMC2	nc|ENSG00000118690|Q8NEN0-2|ARMC2	MULTI-MATCH	OvCa99_classI_Rep5	1		2	448.247818	894.481082	0.058285	2.6126E-05	-10.473	-0.0046947	-10.415	-0.0046686	448.24272829598243	40.387	0.55921	40.387	40.06	40.619	0	-0.035039	-0.0012739	NaN	20.947	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90427			12382	3320	10144	10156							0.029620960061379265
FSKHILYHRKL	11	Unmodified	_FSKHILYHRKL_					0	0	0			REV__ZNF770|p.T498_G509del|1|0.62|ENSG00000198146|chr15:34981907-34981942|TCCCACAAATATTACAGCCAAAGGGCCTCTGTCCAG/-|inframe_deletion	REV__ZNF770|p.T498_G509del|1|0.62|ENSG00000198146|chr15:34981907-34981942|TCCCACAAATATTACAGCCAAAGGGCCTCTGTCCAG/-|inframe_deletion	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.2823486328125	3	481.285739	1440.83539	-6.5406	-0.0031479	2.0344	0.00097915	-4.5062	-0.0021688	481.28689914588375	161.43	3.2893	159.81	158.56	161.85	-1.6239					191	83	3	0	0	0	0.72488	1	16008	16008		17.167	7.0628	1	100850	+		12383	32779	10145	10157	13542	13542					0.13260400159083474
FSKKFSFYR	9	Unmodified	_FSKKFSFYR_					0	0	0		nc|ENSG00000099840|Q1ZYL8-3|IZUMO4;nc|ENSG00000099840|Q1ZYL8-4|IZUMO4;ENST00000591894.5_1_19:2096998-2098450:+|nuORF;ENST00000498554.5_1_19:2096914-2097955:+|nuORF;ENST00000497445.5_1_19:2096872-2097684:+|nuORF;ENST00000478879.5_1_19:2096872-2098127:+|nuORF;ENST00000590985.2_1_19:2096914-2098127:+|nuORF;nc|ENSG00000099840|Q1ZYL8-2|IZUMO4;ENSG00000099840|ENST00000395301|IZUMO4	nc|ENSG00000099840|Q1ZYL8-3|IZUMO4	nc|ENSG00000099840|Q1ZYL8-3|IZUMO4	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.6873474121094	3	403.885353	1208.63423	1.2902	0.00052109	2.7233	0.0010999	4.0134	0.001621	404.22035322674134	52.52	0.6114	52.52	52.304	52.915	0					16	13	2	0	0	0	0.027462	1	4147	4147		7.8045	0	1	457280			12384	1983	10146	10158	13543	13543					0.03825711122590292
FSKLLAVQNT	10	Unmodified	_FSKLLAVQNT_					0	0	0		tr|A0A553SFX0|A0A553SFX0_NIACIYheC/YheDfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09650PE=4SV=1	tr|A0A553SFX0|A0A553SFX0_NIACIYheC/YheDfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09650PE=4SV=1	tr|A0A553SFX0|A0A553SFX0_NIACIYheC/YheDfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09650PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	560.7922973632812	2	560.821681	1119.62881	1.1244	0.00063057	-1.383	-0.0007756	-0.25861	-0.00014503	561.3202731084074	65.108	0.38428	61.623	61.407	61.791	-3.4854					10	7	2	0	0	0	0.026544	1	4663	4663		76.17	26.728	1	52674			12385	33086	10147	10159	13544	13544					0.07377987540144204
FSKLNEYFA	9	Unmodified	_FSKLNEYFA_					0	0	0		tr|A0A7D6VXE2|A0A7D6VXE2_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12540PE=4SV=1	tr|A0A7D6VXE2|A0A7D6VXE2_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12540PE=4SV=1	tr|A0A7D6VXE2|A0A7D6VXE2_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12540PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.3353271484375	2	559.779482	1117.54441	0.070454	3.9439E-05	-2.4599	-0.001377	-2.3895	-0.0013376	559.7781780802251	38.801	0.62001	38.801	38.576	39.196	0					21	13	3	0	0	0	0.027462	1	2263	2263		31.53	3.6476	1	170040			12386	35276	10148	10160	13545	13545					-0.009659632766215509
FSKMTKEETL	10	Unmodified	_FSKMTKEETL_					0	0	0			REV__ENSG00000143294|ENST00000271526|PRCC	REV__ENSG00000143294|ENST00000271526|PRCC	MULTI-MSMS	OvCa9_classI_Rep3	3	607.3145141601562	2	607.310289	1212.60602	2.0773	0.0012616	3.9023	0.0023699	5.9796	0.0036315	607.3125547207642	106.87	1.4593	105.6	105.22	106.68	-1.267					86	28	4	0	0	0	0.36605	1	7577	7577		72.879	2.063	1	1736200	+		12387	19826	10149	10161	13546	13546					0.008226003603567733
FSKNGKYVRV	10	Unmodified	_FSKNGKYVRV_					0	0	0			REV__ENSG00000215045|ENST00000457091|GRID2IP	REV__ENSG00000215045|ENST00000457091|GRID2IP	MULTI-MSMS	OvCa9_classI_Rep3	3	599.341064453125	2	599.340572	1196.66659	0.3092	0.00018532	-1.0033	-0.00060132	-0.6941	-0.000416	599.3399137510976	92.88	1.8344	90.918	90.56	92.394	-1.9617					92	36	4	0	0	0	0.69073	1	5918	5918		31.53	1.0262	1	424340	+		12388	23310	10150	10162	13547	13547					0.07612498525600131
FSKQTIEFK	9	Unmodified	_FSKQTIEFK_					0	0	0		ENST00000395253.3_1_9:99884091-99884715:+|nuORF;ENSG00000178397|ENST00000313324|FAM220A;ENST00000377689.2_1_9:38527126-38527906:+|nuORF;nc|ENSG00000176007|B1ANY3|FAM220BP	ENST00000395253.3_1_9:99884091-99884715:+|nuORF	ENST00000395253.3_1_9:99884091-99884715:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.2484130859375	2	564.308406	1126.60226	0.54816	0.00030933	-4.3361	-0.0024469	-3.788	-0.0021376	564.3059198222527	62.342	0.49865	62.342	62.122	62.621	0					14	11	2	0	0	0	0.027402	1	5564	5564		76.774	0	1	167910			12389	7753	10151	10163	13548	13548					0.04402298648778924
FSKRKREGTI	10	Unmodified	_FSKRKREGTI_					0	0	0			REV__ENST00000393214.2_1_X:73596333-73596534:-|nuORF	REV__ENST00000393214.2_1_X:73596333-73596534:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3533935546875	2	611.356754	1220.69895	-1.5159	-0.00092675	0.36465	0.00022293	-1.1512	-0.00070382	611.3567832501896	147.85	3.7824	146.41	144.39	148.17	-1.4351					181	75	4	0	0	0	0.80581	1	14674	14674		18.262	3.3972	1	164640	+		12390	25277	10152	10164	13549	13549					0.09743285928607293
FSLFLAKLF	9	Unmodified	_FSLFLAKLF_					0	0	0			REV__chr5:124062510-124213455|90|11.21|0.0|12.03|-|1|TE_info:L1PA4,L1PA4_dup4151,L1,LINE,donor,+,124213455,124219314|LINC01170,None|57	REV__chr5:124062510-124213455|90|11.21|0.0|12.03|-|1|TE_info:L1PA4,L1PA4_dup4151,L1,LINE,donor,+,124213455,124219314|LINC01170,None|57	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.3046264648438	2	543.323328	1084.6321	2.1915	0.0011907	-4.4838	-0.0024362	-2.2922	-0.0012454	543.3201362923169	121.89	0.56066	121.89	121.66	122.22	0					16	11	3	0	0	0	0.027462	1	14005	14005		37.159	6.6555	1	249430	+		12391	16057	10153	10165	13550	13550					0.09317282384790815
FSLFLGFKRDL	11	Unmodified	_FSLFLGFKRDL_					0	0	0		ENST00000492310.5_1_7:43153648-43477745:+|nuORF	ENST00000492310.5_1_7:43153648-43477745:+|nuORF	ENST00000492310.5_1_7:43153648-43477745:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	448.25750732421875	3	448.255446	1341.74451	0.76704	0.00034383	1.6464	0.00073802	2.4135	0.0010818	448.2560989547212	38.312	3.1026	35.385	34.557	37.66	-2.9264					95	61	3	0	0	0	0.68709	1	1486	1486		34.087	7.3368	1	148210			12392	12723	10154	10166	13551	13551					0.08730511391013351
FSLFLGFKRDL	11	Unmodified	_FSLFLGFKRDL_					0	0	0		ENST00000492310.5_1_7:43153648-43477745:+|nuORF	ENST00000492310.5_1_7:43153648-43477745:+|nuORF	ENST00000492310.5_1_7:43153648-43477745:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	448.255446	1341.74451	0.80428	0.00036052	1.709	0.00076605	2.5132	0.0011266	448.25607376408976	38.154	0.69264	35.444	35.222	35.915	-2.7097	0.029446	4.1937E-05	NaN	34.087	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43596			12393	12723	10154	10166							0.08730511391013351
FSLGHGRYVP	10	Unmodified	_FSLGHGRYVP_					0	0	0			REV__ENST00000471992.1_1_17:27185141-27187568:+|nuORF	REV__ENST00000471992.1_1_17:27185141-27187568:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.3004150390625	2	566.79854	1131.58253	2.2706	0.001287	-0.41799	-0.00023692	1.8526	0.0010501	566.7982131871988	136.75	1.0081	136.75	136.44	137.45	0					59	20	4	0	0	0	0.026802	1	16005	16005		19.997	0	1	530310	+		12394	26299	10155	10167	13552	13552					0.021999674287144444
FSLGISVMESI	11	Unmodified	_FSLGISVMESI_					0	0	0			REV__nc|ENSG00000185499|P15941-5|MUC1	REV__nc|ENSG00000185499|P15941-5|MUC1	MULTI-MSMS	OvCa99_classI_Rep5	1	591.8121948242188	2	591.807382	1181.60021	2.0258	0.0011989	2.9648	0.0017546	4.9906	0.0029535	591.8091185252874	117.58	0.70213	117.58	117.23	117.93	0					39	14	4	0	0	0	0.61983	1	13493	13493		42.864	2.2917	1	588530	+		12395	29054	10156	10168	13553	13553					0.016675018486921545
FSLGSTSFLI	10	Unmodified	_FSLGSTSFLI_					0	0	0		ENSG00000225781|ENST00000418316|OR6V1	ENSG00000225781|ENST00000418316|OR6V1	ENSG00000225781|ENST00000418316|OR6V1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.2904663085938	2	536.289682	1070.56481	0.3323	0.00017821	-0.33691	-0.00018068	-0.00461	-2.4723E-06	536.2893178081741	101.75	1.3212	101.75	101.44	102.76	0					69	30	4	0	0	0	0.46756	1	11353	11353		58.782	3.2778	1	2288700			12396	9265	10157	10169	13554	13554					0.0323520738318166
FSLIKDYAVR	10	Unmodified	_FSLIKDYAVR_					0	0	0			REV__tr|A0A7D6ZZP2|A0A7D6ZZP2_9CLOTRibonucleoside-diphosphatereductasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=HZF06_21070PE=3SV=1	REV__tr|A0A7D6ZZP2|A0A7D6ZZP2_9CLOTRibonucleoside-diphosphatereductasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=HZF06_21070PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.9142761230469	3	404.564279	1210.67101	0.65881	0.00026653	-2.713	-0.0010976	-2.0542	-0.00083106	404.5630989712238	28.786	0.59811	28.786	28.539	29.137	0					25	11	3	0	0	0	0.027006	1	994	994		13.508	0	1	84277	+		12397	32417	10158	10170	13555	13555					0.07409962948486282
FSLILFVKS	9	Unmodified	_FSLILFVKS_					0	0	0			REV__tr|A0A7D7AB20|A0A7D7AB20_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13600PE=4SV=1	REV__tr|A0A7D7AB20|A0A7D7AB20_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13600PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.7081298828125	2	527.320786	1052.62702	1.8279	0.00096387	-3.5823	-0.001889	-1.7544	-0.00092513	527.3186175064321	102.18	0.46959	102.18	102	102.47	0					17	10	2	0	0	0	0.027462	1	11418	11418		19.997	9.1312	1	219450	+		12398	32674	10159	10171	13556	13556					0.10280978522177975
FSLILPKYV	9	Unmodified	_FSLILPKYV_					0	0	0		tr|A0A7D6VX14|A0A7D6VX14_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06395PE=4SV=1	tr|A0A7D6VX14|A0A7D6VX14_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06395PE=4SV=1	tr|A0A7D6VX14|A0A7D6VX14_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06395PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	540.329833984375	2	540.328611	1078.64267	-1.2676	-0.00068491	4.0333	0.0021793	2.7657	0.0014944	540.3307152267141	139.22	4.0818	138.16	137	141.08	-1.0595					200	82	3	0	0	0	0.6653	1	11575	11575		24.203	4.8428	1	55828			12399	35267	10160	10172	13557	13557					0.10649265039205602
FSLINKDAN	9	Unmodified	_FSLINKDAN_					0	0	0		tr|A0A7D6ZH15|A0A7D6ZH15_9CLOTUndecaprenyldiphosphatesynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01020PE=4SV=1	tr|A0A7D6ZH15|A0A7D6ZH15_9CLOTUndecaprenyldiphosphatesynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01020PE=4SV=1	tr|A0A7D6ZH15|A0A7D6ZH15_9CLOTUndecaprenyldiphosphatesynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01020PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.8157958984375	2	511.269281	1020.52401	-1.4462	-0.00073939	2.0542	0.0010503	0.60804	0.00031087	511.2690648252298	50.559	0.7212	47.386	47.1	47.821	-3.1734					18	13	2	0	0	0	0.027462	1	2885	2885		23.042	15.352	1	37193			12400	35560	10161	10173	13558	13558					0.014568660635632114
FSLISLFLAL	10	Unmodified	_FSLISLFLAL_					0	0	0		ENST00000458005.2_1_17:9738090-9769219:+|nuORF;ENSG00000065325|ENST00000262441|GLP2R	ENST00000458005.2_1_17:9738090-9769219:+|nuORF	ENST00000458005.2_1_17:9738090-9769219:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	562.3430786132812	2	562.341718	1122.66888	-1.142	-0.00064221	3.7902	0.0021314	2.6482	0.0014892	562.3438081477608	141.84	4.7959	141.62	140.24	145.03	-0.22697					133	96	2	0	0	0	0.76627	1	14218	14218		23.042	3.6825	1	113870			12401	1322	10162	10174	13559	13559					0.11245534210684127
FSLKASVYSFQ	11	Unmodified	_FSLKASVYSFQ_					0	0	0			REV__tr|A0A553SL90|A0A553SL90_NIACI3'-5'exonucleaseDinGOS=NialliacirculansOX=1397GN=dinGPE=3SV=1	REV__tr|A0A553SL90|A0A553SL90_NIACI3'-5'exonucleaseDinGOS=NialliacirculansOX=1397GN=dinGPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	638.8331909179688	2	638.832246	1275.64994	1.0511	0.00067149	0.71018	0.00045368	1.7613	0.0011252	638.8326720877814	152.34	0.8735	152.34	151.97	152.85	0					54	21	4	0	0	0	0.6112	1	17833	17833		43.651	9.4782	1	439560	+		12402	30201	10163	10175	13560	13560					0.02313952848999179
FSLKLKKWFTK	11	Unmodified	_FSLKLKKWFTK_					0	0	0			REV__ENST00000556408.5_1_14:71787209-71880727:+|nuORF	REV__ENST00000556408.5_1_14:71787209-71880727:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	475.96026611328125	3	475.958741	1424.85439	1.142	0.00054357	3.1163	0.0014832	4.2583	0.0020268	475.96017295616696	107.25	2.8215	105.99	105.67	108.49	-1.267					142	54	4	0	0	0	0.72458	1	7637	7637		21.032	11.386	1	646610	+		12403	27557	10164	10176	13561	13561					0.158959367301577
FSLLFCIIV	9	Unmodified	_FSLLFCIIV_					0	0	0		ENST00000562539.1_1_16:74946047-74949971:-|nuORF	ENST00000562539.1_1_16:74946047-74949971:-|nuORF	ENST00000562539.1_1_16:74946047-74949971:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.7660522460938	2	527.803914	1053.59328	2.657	0.0014024	4.4263	0.0023362	7.0833	0.0037386	527.805896024581	90.192	0.33355	90.192	89.977	90.31	0					11	7	2	0	0	0	0.027373	1	9667	9667		50.025	0	1	755800			12404	13774	10165	10177	13562	13562					0.06862233758761249
FSLLTVLDI	9	Unmodified	_FSLLTVLDI_					0	0	0			REV__tr|A0A553SIA6|A0A553SIA6_NIACIHomoserinedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_14530PE=3SV=1	REV__tr|A0A553SIA6|A0A553SIA6_NIACIHomoserinedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_14530PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.7649230957031	2	510.802426	1019.5903	-0.28213	-0.00014411	-2.4093	-0.0012307	-2.6914	-0.0013748	510.8008235597253	58.848	0.85181	55.456	55.15	56.002	-3.392					26	16	2	0	0	0	0.027279	1	3952	3952		71.296	5.4925	1	47420	+		12405	29876	10166	10178	13563	13563					0.08128681905623125
FSLLTVLDI	9	Unmodified	_FSLLTVLDI_					0	0	0			REV__tr|A0A553SIA6|A0A553SIA6_NIACIHomoserinedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_14530PE=3SV=1	REV__tr|A0A553SIA6|A0A553SIA6_NIACIHomoserinedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_14530PE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	510.802426	1019.5903	-0.40848	-0.00020865	-2.7206	-0.0013897	-3.129	-0.0015983	510.800819853676	55.252	0.29045	55.252	55.15	55.44	0	-0.070018	-0.00048217	NaN	71.296	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140850	+		12406	29876	10166	10178							0.08128681905623125
FSLLTVLDI	9	Unmodified	_FSLLTVLDI_					0	0	0			REV__tr|A0A553SIA6|A0A553SIA6_NIACIHomoserinedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_14530PE=3SV=1	REV__tr|A0A553SIA6|A0A553SIA6_NIACIHomoserinedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_14530PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	510.802426	1019.5903	-0.59544	-0.00030415	-1.9277	-0.00098468	-2.5232	-0.0012888	510.8011563883989	58.05	1.0528	55.258	54.823	55.876	-2.792	-0.063983	0.00032781	NaN	71.296	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31500	+		12407	29876	10166	10178							0.08128681905623125
FSLLYNVNY	9	Unmodified	_FSLLYNVNY_					0	0	0			REV__tr|A0A553SGS3|A0A553SGS3_NIACIRedox-sensingtranscriptionalrepressorRexOS=NialliacirculansOX=1397GN=rexPE=3SV=1	REV__tr|A0A553SGS3|A0A553SGS3_NIACIRedox-sensingtranscriptionalrepressorRexOS=NialliacirculansOX=1397GN=rexPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.8848266601562	2	566.787307	1131.56006	1.5786	0.00089474	3.2623	0.001849	4.8409	0.0027437	566.7887452080311	123.29	0.28304	123.29	123.04	123.33	0					7	5	2	0	0	0	0.027462	1	14182	14182		25.574	7.312	1	25959	+		12408	29732	10167	10179	13564	13564					-0.0004567675957787287
FSLMITGWI	9	Unmodified	_FSLMITGWI_					0	0	0		tr|A0A7D6VW75|A0A7D6VW75_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02920PE=3SV=1	tr|A0A7D6VW75|A0A7D6VW75_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02920PE=3SV=1	tr|A0A7D6VW75|A0A7D6VW75_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02920PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	534.286376953125	2	534.283346	1066.55214	1.3354	0.00071349	3.7148	0.0019848	5.0503	0.0026983	534.2849727166374	111.36	0.67004	111.36	110.98	111.65	0					31	14	3	0	0	0	0.25214	1	12654	12654		68.485	2.0554	1	483980			12409	35243	10168	10180	13565	13565					0.021524727192854698
FSLNLFAFP	9	Unmodified	_FSLNLFAFP_					0	0	0		ENST00000307808.10_1_4:87968262-87968415:+|nuORF	ENST00000307808.10_1_4:87968262-87968415:+|nuORF	ENST00000307808.10_1_4:87968262-87968415:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.8603515625	2	528.28166	1054.54877	2.4147	0.0012756	2.2863	0.0012078	4.701	0.0024835	528.2816073979469	94.496	0.29868	94.496	94.433	94.732	0					9	6	2	0	0	0	0.027448	1	10295	10295		44.117	17.424	1	314200			12410	10259	10169	10181	13566	13566					0.023675459369542295
FSLPFFAPLG	10	Unmodified	_FSLPFFAPLG_					0	0	0		ENSG00000167914|ENST00000301659|GSDMA	ENSG00000167914|ENST00000301659|GSDMA	ENSG00000167914|ENST00000301659|GSDMA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.3228759765625	2	548.29731	1094.58007	0.13651	7.4847E-05	-3.8113	-0.0020897	-3.6748	-0.0020149	548.2954316657789	38.315	1.8357	35.388	34.857	36.693	-2.9264					64	36	3	0	0	0	0.026822	1	1606	1606		16.473	0	1	83276			12411	6850	10170	10182	13567	13567					0.03656118971025535
FSLPQNLTL	9	Unmodified	_FSLPQNLTL_					0	0	0		ENST00000326597.6_2_22:38008894-38009071:+|nuORF	ENST00000326597.6_2_22:38008894-38009071:+|nuORF	ENST00000326597.6_2_22:38008894-38009071:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.7708129882812	2	516.78985	1031.56515	-0.31406	-0.0001623	-3.8839	-0.0020071	-4.1979	-0.0021695	516.7876762043535	70.661	0.66922	70.661	70.13	70.8	0					37	16	3	0	0	0	0.027353	1	6716	6716		71.877	0	1	4183300			12412	10410	10171	10183	13568	13568					0.05062627103052364
FSLPWPPAPL	10	Unmodified	_FSLPWPPAPL_					0	0	0		ENST00000514900.5_1_3:129122974-129137267:-|nuORF	ENST00000514900.5_1_3:129122974-129137267:-|nuORF	ENST00000514900.5_1_3:129122974-129137267:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	562.3436279296875	2	562.810585	1123.60662	1.6842	0.0009479	3.6605	0.0020602	5.3447	0.0030081	562.8125678819742	142	1.2569	140.53	140.18	141.44	-1.4627					71	23	4	0	0	0	0.026871	1	13865	13865		45.952	6.6991	1	309470			12413	13036	10172	10184	13569	13569					0.049758078623654
FSLQAFLDSVL	11	Unmodified	_FSLQAFLDSVL_					0	0	0		ENST00000302516.9_1_16:70557779-70560515:+|nuORF	ENST00000302516.9_1_16:70557779-70560515:+|nuORF	ENST00000302516.9_1_16:70557779-70560515:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	620.3624877929688	2	620.334621	1238.65469	1.7211	0.0010677	2.2332	0.0013853	3.9543	0.002453	620.8378976191649	77.543	0.63115	77.543	77.293	77.924	0					23	14	3	0	0	0	0.025912	1	7796	7796		29.17	1.0886	1	203620			12414	10200	10173	10185	13570	13570					0.044908369917493474
FSLSTRFT	8	Unmodified	_FSLSTRFT_					0	0	0			REV__ENST00000216297.6_1_14:21820314-21820401:-|nuORF	REV__ENST00000216297.6_1_14:21820314-21820401:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.772705078125	2	479.753267	957.491981	2.9328	0.001407	-1.0184	-0.00048858	1.9144	0.00091845	479.7526427890641	90.154	0.40508	90.154	89.977	90.382	0					10	9	2	0	0	0	0.028476	1	9678	9678		27.882	3.6795	1	152690	+		12415	23721	10174	10186	13571	13571					0.01153498380426754
FSLTKDSVV	9	Unmodified	_FSLTKDSVV_					0	0	0			REV__nc|ENSG00000285292|Q9UG63-2|ABCF2	REV__nc|ENSG00000285292|Q9UG63-2|ABCF2	MULTI-MSMS	OvCa9_classI_Rep3	3	498.2756652832031	2	498.274032	994.533512	0.48505	0.00024169	4.2233	0.0021044	4.7084	0.0023461	498.27598303845053	68.753	2.0444	65.939	65.611	67.655	-2.8144					81	40	3	0	0	0	0.22961	1	2999	2999		71.296	0	1	484800	+		12416	16592	10175	10187	13572	13572					0.036026343490902946
FSLTQPTSVSF	11	Unmodified	_FSLTQPTSVSF_					0	0	0			REV__ZP1|p.N304*|1|0.08|ENSG00000149506|chr11:60871039-60871040|-/T|frameshift_variant	REV__ZP1|p.N304*|1|0.08|ENSG00000149506|chr11:60871039-60871040|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	607.3096313476562	2	607.308603	1212.60265	1.2734	0.00077333	2.2254	0.0013515	3.4988	0.0021249	607.3098713092123	88.651	1.9735	87.283	86.592	88.565	-1.3676					100	39	3	0	0	0	0.66495	1	7776	7776		38.754	3.6016	1	588040	+		12417	20168	10176	10188	13573	13573					0.004856735779867449
FSLTSFPRG	9	Unmodified	_FSLTSFPRG_					0	0	0		ENST00000268035.10_1_15:99503820-99504300:+|nuORF	ENST00000268035.10_1_15:99503820-99504300:+|nuORF	ENST00000268035.10_1_15:99503820-99504300:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.82159423828125	2	506.266542	1010.51853	-0.73662	-0.00037292	-0.03045	-1.5416E-05	-0.76707	-0.00038834	506.2664634728665	67.493	3.8688	64.832	63.254	67.123	-2.661					141	77	3	0	0	0	0.027455	1	5530	5530		42.396	0	1	73202			12418	9970	10177	10189	13574	13574					0.01369187271757255
FSLVARKLSRP	11	Unmodified	_FSLVARKLSRP_					0	0	0		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-MSMS	OvCa9_classI_Rep3	3	425.2626037597656	3	425.262823	1272.76664	1.4407	0.0006127	-1.5109	-0.00064252	-0.070139	-2.9828E-05	425.2621237617474	67.802	1.1518	64.915	64.689	65.841	-2.8873					66	22	4	0	0	0	0.68709	1	2919	2919		34.087	8.9605	1	238150			12419	6706	10178	10190	13575	13575					0.14116735859397522
FSLVKRGRAAR	11	Unmodified	_FSLVKRGRAAR_					0	0	0			REV__ENST00000565667.2_1_16:89390293-89390830:+|nuORF	REV__ENST00000565667.2_1_16:89390293-89390830:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	421.71746826171875	3	420.926434	1259.75747	-0.74155	-0.00031214	3.9125	0.0016469	3.1709	0.0013347	420.9279559156798	34.348	0.4716	34.348	34.161	34.632	0					29	9	5	0	0	0	0.025909	1	1667	1667		12.957	0	1	318260	+		12420	27652	10179	10191	13576	13576					0.1379838729376388
FSLWLRNKC	9	Unmodified	_FSLWLRNKC_					0	0	0		nc|ENSG00000130159|Q9BQ95-3|ECSIT;ENSG00000130159|ENST00000270517|ECSIT	nc|ENSG00000130159|Q9BQ95-3|ECSIT	nc|ENSG00000130159|Q9BQ95-3|ECSIT	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.3388061523438	2	583.810593	1165.60663	0.23638	0.000138	-4.3898	-0.0025628	-4.1534	-0.0024248	583.8106480565231	74.169	0.22953	74.169	74.056	74.286	0					6	5	2	0	0	0	0.027462	1	7331	7331		32.812	14.55	1	124410			12421	3960	10180	10192	13577	13577					0.03045484590711567
FSLYFILL	8	Unmodified	_FSLYFILL_					0	0	0			REV__CRB1|p.L523Sfs*28|1|0.04|ENSG00000134376|chr1:197421393-197421394|-/G|frameshift_variant	REV__CRB1|p.L523Sfs*28|1|0.04|ENSG00000134376|chr1:197421393-197421394|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.77447509765625	2	508.296779	1014.57901	-1.5468	-0.00078623	4.318	0.0021948	2.7712	0.0014086	508.2988395039022	118.83	0.47466	117.48	117.21	117.68	-1.3444					15	8	2	0	0	0	0.028476	1	11159	11159		28.254	0	1	32065	+		12422	16239	10181	10193	13578	13578					0.07229904602138504
FSMKMKSL	8	Unmodified	_FSMKMKSL_					0	0	0		nc|ENSG00000143515|P98198-4|ATP8B2	nc|ENSG00000143515|P98198-4|ATP8B2	nc|ENSG00000143515|P98198-4|ATP8B2	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.2557678222656	2	486.256274	970.497995	0.65616	0.00031906	-1.6525	-0.00080352	-0.9963	-0.00048446	486.25529435295414	111.07	0.78917	109.47	109.17	109.96	-1.6011					38	14	4	0	0	0	0.61436	1	10247	10247		60.972	2.19	1	125590			12423	15074	10182	10194	13579	13579					0.011565572960762438
FSMMKHGH	8	Unmodified	_FSMMKHGH_					0	0	0			REV__GNA13|p.D120H|1|0.06|ENSG00000120063|chr17:65053654-65053654|C/G|missense_variant	REV__GNA13|p.D120H|1|0.06|ENSG00000120063|chr17:65053654-65053654|C/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.2913513183594	2	487.72039	973.426227	2.6723	0.0013034	-0.1892	-9.2277E-05	2.4831	0.0012111	487.7191079639306	90.259	0.24499	90.259	90.101	90.346	0					9	5	2	0	0	0	0.028476	1	9660	9660		19.36	0	1	293220	+		12424	28160	10183	10195	13580	13580					-0.06154937337771571
FSNCHQKVL	9	Unmodified	_FSNCHQKVL_					0	0	0		ENST00000460852.1_1_1:202302426-202304891:-|nuORF	ENST00000460852.1_1_1:202302426-202304891:-|nuORF	ENST00000460852.1_1_1:202302426-202304891:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.2843017578125	2	538.271301	1074.52805	-0.14724	-7.9253E-05	-3.3509	-0.0018037	-3.4981	-0.0018829	538.2694400592867	68.333	0.98251	64.842	64.622	65.605	-3.4902					39	19	3	0	0	0	0.027462	1	5103	5103		27.882	0	1	381270			12425	12160	10184	10196	13581	13581					-0.006233677143654859
FSNGLVLINR	10	Unmodified	_FSNGLVLINR_					0	0	0			REV__ENSG00000215421|ENST00000299687|ZNF407	REV__ENSG00000215421|ENST00000299687|ZNF407	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.7946166992188	2	566.827298	1131.64004	0.63449	0.00035964	-1.7916	-0.0010155	-1.1571	-0.00065588	566.8255259378144	90.925	0.40968	88.35	88.007	88.417	-2.575					9	7	2	0	0	0	0.026956	1	7819	7819		26.693	6.6961	1	15288	+		12426	23316	10185	10197	13582	13582					0.0794880963428568
FSNGLVLINR	10	Unmodified	_FSNGLVLINR_					0	0	0			REV__ENSG00000215421|ENST00000299687|ZNF407	REV__ENSG00000215421|ENST00000299687|ZNF407	MULTI-MATCH	OvCa9_classI_Rep2	2		2	566.827298	1131.64004	1.659	0.00094036	-2.0213	-0.0011457	-0.36233	-0.00020538	566.8260351531928	90.034	0.64377	88.732	88.532	89.176	-1.302	0.19101	-3.2081E-05	NaN	26.693	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23391	+		12427	23316	10185	10197							0.0794880963428568
FSNIFLRPL	9	Unmodified	_FSNIFLRPL_					0	0	0		nc|ENSG00000170190|O15375-2|SLC16A5;ENSG00000170190|ENST00000329783|SLC16A5	nc|ENSG00000170190|O15375-2|SLC16A5	nc|ENSG00000170190|O15375-2|SLC16A5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.8020629882812	2	553.821484	1105.62842	0.47704	0.00026419	1.085	0.00060089	1.562	0.00086509	553.8223082116684	60.787	0.44928	57.357	57.095	57.544	-3.43					20	8	3	0	0	0	0.027462	1	4105	4105		35.618	5.1146	1	19642			12428	7081	10186	10198	13583	13583					0.07982612610931028
FSNLHVFKL	9	Unmodified	_FSNLHVFKL_					0	0	0			REV__ENST00000452673.6_1_5:179157214-179157430:+|nuORF	REV__ENST00000452673.6_1_5:179157214-179157430:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	551.8345336914062	2	552.813659	1103.61277	-0.28574	-0.00015796	-0.59676	-0.0003299	-0.8825	-0.00048786	553.3156193537885	107.95	0.83488	106.75	106.48	107.32	-1.1978					19	15	2	0	0	0	0.027462	1	7742	7742		32.812	13.709	1	18970	+		12429	25986	10187	10199	13584	13584					0.06510326093894037
FSNLTVLDNIK	11	Unmodified	_FSNLTVLDNIK_					0	0	0		tr|A0A7D6W2H0|A0A7D6W2H0_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06250PE=4SV=1	tr|A0A7D6W2H0|A0A7D6W2H0_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06250PE=4SV=1	tr|A0A7D6W2H0|A0A7D6W2H0_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06250PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	632.3482055664062	2	632.350803	1262.68705	-1.4922	-0.00094358	1.3353	0.00084439	-0.15686	-9.9191E-05	632.3515070248368	99.419	0.69532	98.588	98.268	98.964	-0.83051					41	13	5	0	0	0	0.36705	1	9060	9060		63.534	12.341	1	442020			12430	35430	10188	10200	13585	13585					0.06621624394733772
FSNRKTKKP	9	Unmodified	_FSNRKTKKP_					0	0	0			REV__tr|A0A553SPQ9|A0A553SPQ9_NIACINUDIXhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_26865PE=4SV=1	REV__tr|A0A553SPQ9|A0A553SPQ9_NIACINUDIXhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_26865PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.3123168945312	2	553.327465	1104.64038	-0.38082	-0.00021072	0.93615	0.000518	0.55533	0.00030728	553.3274089321815	68.46	0.82536	68.46	68.152	68.977	0					29	19	2	0	0	0	0.027426	1	6496	6496		56.721	7.2795	1	985980	+		12431	30560	10189	10201	13586	13586					0.09224229354140334
FSNRKTKKP	9	Unmodified	_FSNRKTKKP_					0	0	0			REV__tr|A0A553SPQ9|A0A553SPQ9_NIACINUDIXhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_26865PE=4SV=1	REV__tr|A0A553SPQ9|A0A553SPQ9_NIACINUDIXhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_26865PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	553.327465	1104.64038	-0.10507	-5.8139E-05	-0.5942	-0.00032879	-0.69927	-0.00038692	553.3266880878093	71.45	0.69584	68.847	68.584	69.28	-2.6023	0.19349	-0.0003467	NaN	56.721	31	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30268	+		12432	30560	10189	10201							0.09224229354140334
FSPEKTIGLQ	10	Unmodified	_FSPEKTIGLQ_					0	0	0			REV__nc|ENSG00000111554|Q8TC05-4|MDM1	REV__nc|ENSG00000111554|Q8TC05-4|MDM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.8136596679688	2	560.305864	1118.59717	1.8712	0.0010484	-0.38429	-0.00021532	1.4869	0.0008331	560.3061134033626	146.68	0.73251	146.68	146.38	147.11	0					34	14	4	0	0	0	0.027174	1	17137	17137		27.882	16.246	1	533140	+		12433	18038	10190	10202	13587	13587					0.04261994786179457
FSPFLHRFLSH	11	Unmodified	_FSPFLHRFLSH_					0	0	0			REV__ENSG00000187808|ENST00000343905|SOWAHD	REV__ENSG00000187808|ENST00000343905|SOWAHD	MULTI-SECPEP	OvCa99_classI_Rep5	1	462.7695617675781	3	463.247173	1386.71969	-0.80779	-0.0003742	-3.5382	-0.0016391	-4.346	-0.0020133	463.24552032836556	66.07	0.70433	66.07	65.748	66.452	0					42	17	3	0	0	0	0.026145	1	6101	6101		12.957	2.8536	1	1593400	+		12434	22667	10191	10203	13588	13588					0.04179876308285202
FSPFRLLSF	9	Unmodified	_FSPFRLLSF_					0	0	0		ENST00000254323.6_1_19:13942265-13942868:+|nuORF	ENST00000254323.6_1_19:13942265-13942868:+|nuORF	ENST00000254323.6_1_19:13942265-13942868:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	557.3068237304688	2	557.30821	1112.60187	-0.15901	-8.8615E-05	-3.845	-0.0021429	-4.004	-0.0022315	557.3059120634497	79.754	2.1377	77.414	76.902	79.039	-2.3399					93	41	3	0	0	0	0.14998	1	4322	4322		84.916	4.4609	1	880010			12435	9810	10192	10204	13589	13589					0.050069237196112226
FSPGRAERHSI	11	Unmodified	_FSPGRAERHSI_					0	0	0			REV__nc|ENSG00000178287|Q08648-2|SPAG11B	REV__nc|ENSG00000178287|Q08648-2|SPAG11B	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.25384521484375	3	419.554666	1255.64217	-0.33445	-0.00014032	1.9966	0.00083766	1.6621	0.00069734	419.5555751657612	66.172	0.35658	66.172	66.096	66.452	0					11	8	2	0	0	0	0.025568	1	6144	6144		39.873	17.293	1	138420	+		12436	16116	10193	10205	13590	13590					0.024572383720851576
FSPKATSILGL	11	Unmodified	_FSPKATSILGL_					0	0	0			REV__nc|ENSG00000164616|Q9UKT6|FBXL21P	REV__nc|ENSG00000164616|Q9UKT6|FBXL21P	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3304443359375	2	567.331882	1132.64921	-0.48412	-0.00027465	-3.1025	-0.0017602	-3.5866	-0.0020348	567.3299446868054	145.54	4.8872	144.11	142.68	147.57	-1.4357					247	95	4	0	0	0	0.72473	1	14556	14556		19.104	0.77911	1	208760	+		12437	28971	10194	10206	13591	13591					0.0881915819995811
FSPLSEQMP	9	Unmodified	_FSPLSEQMP_					0	0	0			REV__ENST00000434399.5_1_7:30601325-30601478:-|nuORF	REV__ENST00000434399.5_1_7:30601325-30601478:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.8041381835938	2	518.244418	1034.47428	-0.74898	-0.00038816	3.7718	0.0019547	3.0228	0.0015666	518.2463340102964	48.005	0.95012	48.005	47.422	48.372	0					39	21	3	0	0	0	0.027448	1	3468	3468		63.306	2.3343	1	2825700	+		12438	25756	10195	10207	13592	13592					-0.041575849367291084
FSPLSEQMP	9	Unmodified	_FSPLSEQMP_					0	0	0			REV__ENST00000434399.5_1_7:30601325-30601478:-|nuORF	REV__ENST00000434399.5_1_7:30601325-30601478:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	518.244418	1034.47428	-0.94835	-0.00049148	5.3622	0.0027789	4.4138	0.0022874	518.2470003540966	51.282	0.49936	48.109	47.872	48.372	-3.1734	0.051862	0.0013674	NaN	63.306	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18115	+		12439	25756	10195	10207							-0.041575849367291084
FSPVQALQKGR	11	Unmodified	_FSPVQALQKGR_					0	0	0		nc|ENSG00000179889|Q6P996-3|PDXDC1;nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1	nc|ENSG00000179889|Q6P996-3|PDXDC1	nc|ENSG00000179889|Q6P996-3|PDXDC1	MULTI-SECPEP	OvCa9_classI_Rep3	3	615.8287353515625	2	615.851304	1229.68806	1.0691	0.00065838	-2.5	-0.0015396	-1.4309	-0.00088122	616.3518663898195	80.76	0.46301	78.437	78.182	78.645	-2.3226					11	8	2	0	0	0	0.025714	1	4457	4457		46.457	19.764	1	12469			12440	7846	10196	10208	13593	13593					0.08239883554324479
FSPWIVKKPP	10	Unmodified	_FSPWIVKKPP_					0	0	0		nc|ENSG00000132554|Q8NE09-3|RGS22;ENSG00000132554|ENST00000360863|RGS22;nc|ENSG00000132554|Q8NE09-2|RGS22;ENST00000520923.5_1_8:101051146-101092499:-|nuORF	nc|ENSG00000132554|Q8NE09-3|RGS22	nc|ENSG00000132554|Q8NE09-3|RGS22	MULTI-SECPEP	OvCa9_classI_Rep4_	4	600.3341064453125	2	599.852784	1197.69102	-0.26133	-0.00015676	-3.169	-0.0019009	-3.4304	-0.0020577	599.850589087542	81.611	0.91838	78.901	78.641	79.559	-2.7106					33	18	3	0	0	0	0.027056	1	6790	6790		35.618	0	1	118220			12441	4147	10197	10209	13594	13594					0.10007758679148537
FSQATVLLH	9	Unmodified	_FSQATVLLH_					0	0	0			REV__ENST00000392973.7_1_16:90075326-90076003:-|nuORF	REV__ENST00000392973.7_1_16:90075326-90076003:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.2813415527344	2	508.282192	1014.54983	-1.3178	-0.00066984	-2.7461	-0.0013958	-4.064	-0.0020656	508.2805601120073	45.174	1.7186	42.136	41.867	43.586	-3.0385					74	32	3	0	0	0	0.24951	1	2308	2308		68.787	5.4806	1	984500	+		12442	25272	10198	10210	13595	13595					0.04313760305853975
FSQDGQRE	8	Unmodified	_FSQDGQRE_					0	0	0		ENSG00000184451|ENST00000332438|CCR10	ENSG00000184451|ENST00000332438|CCR10	ENSG00000184451|ENST00000332438|CCR10	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.7779541015625	2	483.717413	965.420273	0.1628	7.8748E-05	-2.5376	-0.0012275	-2.3748	-0.0011487	483.71599229848033	62.626	0.48348	62.626	62.418	62.902	0					23	11	3	0	0	0	0.028476	1	5570	5570		24.203	0	1	1398500			12443	8159	10199	10211	13596	13596					-0.06382041044082598
FSQFPQQLTPP	11	Unmodified	_FSQFPQQLTPP_					0	0	0		ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	MULTI-MSMS	OvCa9_classI_Rep2	2	645.324462890625	2	645.32987	1288.64519	-1.4341	-0.00092546	-4.1165	-0.0026565	-5.5506	-0.003582	645.327117611008	98.778	3.0684	97.885	96.974	100.04	-0.89305					168	61	4	0	0	0	0.68021	1	8970	8970		36.447	7.2972	1	979390			12444	3778	10200	10212	13597	13597					0.012410687062356374
FSQGASLFLVY	11	Unmodified	_FSQGASLFLVY_					0	0	0		ENST00000444751.5_1_1:45140474-45166606:+|nuORF	ENST00000444751.5_1_1:45140474-45166606:+|nuORF	ENST00000444751.5_1_1:45140474-45166606:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	410.2381286621094	3	411.216768	1230.62847	0.41753	0.0001717	-3.0565	-0.0012569	-2.639	-0.0010852	411.54957520019184	36.234	0.22826	36.234	36.029	36.257	0					7	4	2	0	0	0	0.026056	1	1867	1867		13.508	2.9461	1	12663			12445	11961	10201	10213	13598	13598					0.022385678202681447
FSQLLPKRPL	10	Unmodified	_FSQLLPKRPL_					0	0	0			REV__ENST00000464413.1_1_2:99426225-99438629:-|nuORF	REV__ENST00000464413.1_1_2:99426225-99438629:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	599.865966796875	2	599.868966	1197.72338	-1.3286	-0.000797	-2.1055	-0.001263	-3.4341	-0.00206	599.8675999680742	56.1	1.4372	53.296	52.928	54.366	-2.804					81	28	4	0	0	0	0.69928	1	3955	3955		19.104	4.9664	1	437740	+		12446	22871	10202	10214	13599	13599					0.13242546082119588
FSQTAGHT	8	Unmodified	_FSQTAGHT_					0	0	0			REV__nc|ENSG00000187720|Q6ZMP0-2|THSD4	REV__nc|ENSG00000187720|Q6ZMP0-2|THSD4	MULTI-MSMS	OvCa99_classI_Rep5	1	424.6984558105469	2	424.698492	847.382431	0.30153	0.00012806	-0.13106	-5.5663E-05	0.17046	7.2395E-05	424.69832018468685	31.435	1.039	31.435	31.264	32.303	0					40	20	4	0	0	0	0.64026	1	1288	1288		55.504	2.1528	1	716540	+		12447	22658	10203	10215	13600	13600					-0.04736507238908416
FSQTPVVVKN	10	Unmodified	_FSQTPVVVKN_					0	0	0		ENSG00000118492|ENST00000397944|ADGB	ENSG00000118492|ENST00000397944|ADGB	ENSG00000118492|ENST00000397944|ADGB	MULTI-MSMS	OvCa9_classI_Rep3	3	559.8152465820312	2	559.813856	1117.61316	-0.97774	-0.00054735	4.3631	0.0024425	3.3854	0.0018952	559.8160584775942	134.25	2.5628	133.13	132.52	135.08	-1.1226					125	51	4	0	0	0	0.62299	1	10817	10817		39.253	0.44669	1	225320			12448	3309	10204	10216	13601	13601					0.05905701023107213
FSRAKAKEMVL	11	Unmodified	_FSRAKAKEMVL_					0	0	0			REV__ENST00000491833.5_1_X:153061290-153061545:+|nuORF	REV__ENST00000491833.5_1_X:153061290-153061545:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	640.3416748046875	2	640.36319	1278.71183	-0.018139	-1.1615E-05	0.61262	0.0003923	0.59449	0.00038069	640.3635424425156	52.227	0.25256	49.019	48.943	49.196	-3.208					6	4	2	0	0	0	0.025594	1	3111	3111		41.427	16.301	1	11960	+		12449	26683	10205	10217	13602	13602					0.08361980996482998
FSRALHLDPQ	10	Unmodified	_FSRALHLDPQ_					0	0	0		ENSG00000167094|ENST00000373289|TTC16	ENSG00000167094|ENST00000373289|TTC16	ENSG00000167094|ENST00000373289|TTC16	MULTI-SECPEP	OvCa99_classI_Rep5	1	591.8077392578125	2	592.314554	1182.61456	2.6801	0.0015875	1.9737	0.001169	4.6537	0.0027565	592.3164921983544	75.168	0.43594	75.168	75.046	75.482	0					12	10	2	0	0	0	0.026956	1	7457	7457		26.693	3.6504	1	261360			12450	6752	10206	10218	13603	13603					0.030553351118669525
FSRATTLSR	9	Unmodified	_FSRATTLSR_					0	0	0		ENSG00000155858|ENST00000286307|LSM11	ENSG00000155858|ENST00000286307|LSM11	ENSG00000155858|ENST00000286307|LSM11	MULTI-MSMS	OvCa9_classI_Rep2	2	519.7887573242188	2	519.788173	1037.56179	1.7462	0.00090765	-0.56364	-0.00029297	1.1825	0.00061467	519.7877072315993	28.989	1.1633	26.279	25.999	27.162	-2.7097					53	24	3	0	0	0	0.28934	1	664	664		64.207	5.4253	1	85752			12451	5806	10207	10219	13604	13604					0.0445137704903118
FSRGFLRE	8	Unmodified	_FSRGFLRE_					0	0	0			REV__ENST00000557815.1_1_15:70350468-70350999:-|nuORF	REV__ENST00000557815.1_1_15:70350468-70350999:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	506.2735900878906	2	506.272158	1010.52976	1.7132	0.00086734	1.5295	0.00077434	3.2427	0.0016417	506.2727467608177	54.771	2.6321	51.6	50.779	53.411	-3.1715					173	88	3	0	0	0	0.73205	1	1445	1445		35.618	1.4457	1	154000	+		12452	27580	10208	10220	13605	13605					0.024920093659034137
FSRGLPAGVL	10	Unmodified	_FSRGLPAGVL_					0	0	0			REV__L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|12|1|sense	REV__L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|12|1|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.7969055175781	2	508.798009	1015.58147	0.15989	8.1351E-05	-0.09325	-4.7445E-05	0.066639	3.3906E-05	508.79770880532556	111.59	1.4617	110.08	109.68	111.15	-1.5111					73	27	4	0	0	0	0.59703	1	10298	10298		42.396	1.8235	1	395290	+		12453	28558	10209	10221	13606	13606					0.07429753059784616
FSRKPGAR	8	Unmodified	_FSRKPGAR_					0	0	0			REV__Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|201|2|anti-sense	REV__Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|201|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	459.2566833496094	2	459.767043	917.519533	-0.73677	-0.00033874	-0.035377	-1.6265E-05	-0.77215	-0.00035501	459.7670476924196	55.937	0.60971	52.643	52.311	52.92	-3.2944					18	11	2	0	0	0	0.028476	1	3521	3521		23.042	0	1	102290	+		12454	28176	10210	10222	13607	13607					0.05747446431314529
FSRPIKALD	9	Unmodified	_FSRPIKALD_					0	0	0			REV__ENSG00000158122|ENST00000375234|PRXL2C	REV__ENSG00000158122|ENST00000375234|PRXL2C	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.3053588867188	2	523.803291	1045.59203	0.6901	0.00036147	3.0163	0.0015799	3.7064	0.0019414	524.3061992271709	139.54	3.8711	138.05	136.91	140.78	-1.4952					135	75	3	0	0	0	0.027462	1	13645	13645		14.865	4.5996	1	63458	+		12455	20551	10211	10223	13608	13608					0.07105735714230832
FSRQRKKKKT	10	Unmodified	_FSRQRKKKKT_					0	0	0		FLAM_C_dup6810|chr5:88975542-88975709:+|1.3047764765099543|0.2918986023967205|2.16|429.0|1|1|sense	FLAM_C_dup6810|chr5:88975542-88975709:+|1.3047764765099543|0.2918986023967205|2.16|429.0|1|1|sense	FLAM_C_dup6810|chr5:88975542-88975709:+|1.3047764765099543|0.2918986023967205|2.16|429.0|1|1|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	436.26055908203125	3	436.273722	1305.79934	-0.12678	-5.5309E-05	-0.11226	-4.8976E-05	-0.23904	-0.00010429	436.2744046049909	64.14	0.4705	61.415	61.075	61.545	-2.7245					24	8	4	0	0	0	0.027062	1	4857	4857		10.104	0	1	76983			12456	14332	10212	10224	13609	13609					0.1586694298225666
FSRVGVPGQ	9	Unmodified	_FSRVGVPGQ_					0	0	0			REV__ENST00000497397.1_1_14:106114767-106115169:-|nuORF	REV__ENST00000497397.1_1_14:106114767-106115169:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	473.75982666015625	2	473.758884	945.503215	-0.67045	-0.00031763	1.6374	0.00077575	0.96699	0.00045812	473.7595866449214	36.374	0.85677	36.374	36.074	36.931	0					51	18	4	0	0	0	0.38969	1	1907	1907		52.937	1.6012	1	2231800	+		12457	26776	10213	10225	13610	13610					0.028283204745775947
FSRVKALAV	9	Unmodified	_FSRVKALAV_					0	0	0			REV__nc|ENSG00000257103|Q8ND56-3|LSM14A	REV__nc|ENSG00000257103|Q8ND56-3|LSM14A	MULTI-MSMS	OvCa9_classI_Rep3	3	495.80596923828125	2	495.808377	989.6022	-3.0687	-0.0015215	-1.3757	-0.00068209	-4.4444	-0.0022036	495.80768519755566	143.85	1.3844	142.86	142.49	143.87	-0.9903					67	27	4	0	0	0	0.70177	1	11971	11971		17.365	0.89182	1	103180	+		12458	23544	10214	10226	13611	13611					0.1069834343944649
FSRYFDYEDGF	11	Unmodified	_FSRYFDYEDGF_					0	0	0			REV__nc|ENSG00000171824|Q01780-2|EXOSC10	REV__nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.2353515625	3	482.538458	1444.59355	-0.66518	-0.00032098	-2.1429	-0.001034	-2.8081	-0.001355	482.53744351824514	37.588	0.32232	37.588	37.438	37.761	0					9	6	2	0	0	0	0.026364	1	2071	2071		9.2118	6.36	1	56565	+		12459	21650	10215	10227	13612	13612					-0.11096719778356601
FSSDSAAH	8	Unmodified	_FSSDSAAH_					0	0	0		ENST00000344120.4_1_5:141692560-141692632:-|nuORF	ENST00000344120.4_1_5:141692560-141692632:-|nuORF	ENST00000344120.4_1_5:141692560-141692632:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.2546691894531	2	411.17485	820.335146	0.7454	0.00030649	-2.4289	-0.00099869	-1.6835	-0.0006922	411.17371527735014	56.114	0.60618	56.114	55.932	56.538	0					25	14	2	0	0	0	0.028476	1	4676	4676		13.775	0	1	920010			12460	10608	10216	10228	13613	13613					-0.0822078650990079
FSSLLHPIKV	10	Unmodified	_FSSLLHPIKV_					0	0	0			REV__tr|A0A553SRP4|A0A553SRP4_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_01520PE=3SV=1	REV__tr|A0A553SRP4|A0A553SRP4_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_01520PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.3548583984375	2	570.842416	1139.67028	-0.44399	-0.00025345	-2.5318	-0.0014452	-2.9757	-0.0016987	570.8407130090425	29.559	0.4479	29.559	29.387	29.835	0					17	8	3	0	0	0	0.027174	1	1044	1044		20.947	6.2828	1	93510	+		12461	30754	10217	10229	13614	13614					0.10603168299439858
FSSLNLLLQTQ	11	Unmodified	_FSSLNLLLQTQ_					0	0	0		nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-MSMS	OvCa9_classI_Rep2	2	632.3488159179688	2	632.350803	1262.68705	-1.4922	-0.00094358	1.3353	0.00084439	-0.15686	-9.9191E-05	632.3515070248368	99.419	0.69532	98.588	98.268	98.964	-0.83051					41	13	5	0	0	0	0.28332	1	9064	9064		69.628	4.1622	1	442020			12462	3916	10218	10230	13615	13615					0.06621624394756509
FSSPHLVQV	9	Unmodified	_FSSPHLVQV_					0	0	0		ENST00000488307.5_1_9:130565203-130570042:+|nuORF;nc|ENSG00000136877|Q05932-3|FPGS;nc|ENSG00000136877|Q05932-2|FPGS;nc|ENSG00000136877|Q05932-4|FPGS;ENSG00000136877|ENST00000373247|FPGS	ENST00000488307.5_1_9:130565203-130570042:+|nuORF	ENST00000488307.5_1_9:130565203-130570042:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.2727966308594	2	507.274367	1012.53418	1.4708	0.00074611	-1.555	-0.0007888	-0.084153	-4.2689E-05	507.2736608620184	89.045	1.331	87.677	87.086	88.417	-1.3676					76	26	4	0	0	0	0.14998	2	7835	7835;7842		84.916	23.944	1	457450			12463	4526	10219	10231	13616;13617	13616					0.02841473788816984
FSSPHLVQV	9	Unmodified	_FSSPHLVQV_					0	0	0		ENST00000488307.5_1_9:130565203-130570042:+|nuORF;nc|ENSG00000136877|Q05932-3|FPGS;nc|ENSG00000136877|Q05932-2|FPGS;nc|ENSG00000136877|Q05932-4|FPGS;ENSG00000136877|ENST00000373247|FPGS	ENST00000488307.5_1_9:130565203-130570042:+|nuORF	ENST00000488307.5_1_9:130565203-130570042:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	507.2743835449219	2	507.274367	1012.53418	-0.99756	-0.00050604	1.2717	0.00064509	0.27412	0.00013906	507.2749922966878	89.853	1.4356	87.772	87.388	88.823	-2.0805					43	27	2	0	0	0	0.12515	3	5550	5550;5556;5562		90.37	15.327	1	696880			12464	4526	10219	10231	13618;13619;13620	13618					0.02841473788816984
FSSPHLVQV	9	Unmodified	_FSSPHLVQV_					0	0	0		ENST00000488307.5_1_9:130565203-130570042:+|nuORF;nc|ENSG00000136877|Q05932-3|FPGS;nc|ENSG00000136877|Q05932-2|FPGS;nc|ENSG00000136877|Q05932-4|FPGS;ENSG00000136877|ENST00000373247|FPGS	ENST00000488307.5_1_9:130565203-130570042:+|nuORF	ENST00000488307.5_1_9:130565203-130570042:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.27459716796875	2	507.274367	1012.53418	0.053912	2.7348E-05	-0.04801	-2.4354E-05	0.0059014	2.9936E-06	507.2746271234734	90.161	1.7788	87.586	87	88.779	-2.575					97	34	5	0	0	0	0.21231	1	7777	7777		74.255	17.534	1	649190			12465	4526	10219	10231	13621	13621					0.02841473788816984
FSSRHLAPP	9	Unmodified	_FSSRHLAPP_					0	0	0			REV__ENST00000520379.2_1_7:77814916-78119132:-|nuORF	REV__ENST00000520379.2_1_7:77814916-78119132:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	506.2738342285156	2	506.272158	1010.52976	1.7132	0.00086734	1.5295	0.00077434	3.2427	0.0016417	506.2727467608177	54.771	2.6321	51.6	50.779	53.411	-3.1715					173	88	3	0	0	0	0.55588	1	1365	1365		37.159	9.2769	1	154000	+		12466	22639	10220	10232	13622	13622					0.02492009365892045
FSSRVFMIL	9	Oxidation (M)	_FSSRVFM(Oxidation (M))IL_		FSSRVFM(1)IL		FSSRVFM(96)IL	0	0	1		chr5:124062510-124213455|90|11.21|0.0|12.03|-|2|TE_info:L1PA4,L1PA4_dup4151,L1,LINE,donor,+,124213455,124219314|LINC01170,None|9	chr5:124062510-124213455|90|11.21|0.0|12.03|-|2|TE_info:L1PA4,L1PA4_dup4151,L1,LINE,donor,+,124213455,124219314|LINC01170,None|9	chr5:124062510-124213455|90|11.21|0.0|12.03|-|2|TE_info:L1PA4,L1PA4_dup4151,L1,LINE,donor,+,124213455,124219314|LINC01170,None|9	MULTI-MSMS	OvCa99_classI_Rep5	1	558.2994995117188	2	558.299527	1114.5845	2.7711	0.0015471	-3.5656	-0.0019907	-0.79455	-0.0004436	558.2975158837085	121.64	1.8468	121.64	121.34	123.18	0					95	39	3	0	0	0	0.10363	1	14049	14049		96.19	16.739	1	4926200			12467	496	10221	10233	13623	13623		10			0.031792601223060046
FSSRVFMIL	9	Oxidation (M)	_FSSRVFM(Oxidation (M))IL_					0	0	1		chr5:124062510-124213455|90|11.21|0.0|12.03|-|2|TE_info:L1PA4,L1PA4_dup4151,L1,LINE,donor,+,124213455,124219314|LINC01170,None|9	chr5:124062510-124213455|90|11.21|0.0|12.03|-|2|TE_info:L1PA4,L1PA4_dup4151,L1,LINE,donor,+,124213455,124219314|LINC01170,None|9	chr5:124062510-124213455|90|11.21|0.0|12.03|-|2|TE_info:L1PA4,L1PA4_dup4151,L1,LINE,donor,+,124213455,124219314|LINC01170,None|9	MULTI-MATCH	OvCa9_classI_Rep2	2		2	558.299527	1114.5845	0.11671	6.5157E-05	-3.2772	-0.0018297	-3.1605	-0.0017645	558.2975656941152	122.04	0.93914	121.83	121.62	122.56	-0.21803	-0.00043571	0.00054253	NaN	96.19	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35458			12468	496	10221	10233				10			0.031792601223060046
FSSRVFMIL	9	Oxidation (M)	_FSSRVFM(Oxidation (M))IL_					0	0	1		chr5:124062510-124213455|90|11.21|0.0|12.03|-|2|TE_info:L1PA4,L1PA4_dup4151,L1,LINE,donor,+,124213455,124219314|LINC01170,None|9	chr5:124062510-124213455|90|11.21|0.0|12.03|-|2|TE_info:L1PA4,L1PA4_dup4151,L1,LINE,donor,+,124213455,124219314|LINC01170,None|9	chr5:124062510-124213455|90|11.21|0.0|12.03|-|2|TE_info:L1PA4,L1PA4_dup4151,L1,LINE,donor,+,124213455,124219314|LINC01170,None|9	MULTI-MATCH	OvCa9_classI_Rep3	3		2	558.299527	1114.5845	0.98046	0.00054739	-3.9929	-0.0022292	-3.0124	-0.0016818	558.2971237766511	122.94	0.98942	121.91	121.64	122.62	-1.0286	0.083831	-0.00025652	NaN	96.19	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71290			12469	496	10221	10233				10			0.031792601223060046
FSSRVFMIL	9	Oxidation (M)	_FSSRVFM(Oxidation (M))IL_					0	0	1		chr5:124062510-124213455|90|11.21|0.0|12.03|-|2|TE_info:L1PA4,L1PA4_dup4151,L1,LINE,donor,+,124213455,124219314|LINC01170,None|9	chr5:124062510-124213455|90|11.21|0.0|12.03|-|2|TE_info:L1PA4,L1PA4_dup4151,L1,LINE,donor,+,124213455,124219314|LINC01170,None|9	chr5:124062510-124213455|90|11.21|0.0|12.03|-|2|TE_info:L1PA4,L1PA4_dup4151,L1,LINE,donor,+,124213455,124219314|LINC01170,None|9	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	558.299527	1114.5845	0.82436	0.00046024	-4.3228	-0.0024134	-3.4985	-0.0019532	558.297117652635	123.3	1.0869	121.93	121.6	122.69	-1.3666	0.10674	-0.00062498	NaN	96.19	50	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66244			12470	496	10221	10233				10			0.031792601223060046
FSSSSALF	8	Unmodified	_FSSSSALF_					0	0	0		ENSG00000205268|ENST00000401827|PDE7A;ENST00000519231.5_1_8:66693177-66754193:-|nuORF;nc|ENSG00000205268|Q13946-3|PDE7A	ENSG00000205268|ENST00000401827|PDE7A	ENSG00000205268|ENST00000401827|PDE7A	MULTI-SECPEP	OvCa99_classI_Rep5	1	422.23956298828125	2	423.205618	844.396684	-0.19727	-8.3487E-05	0.26467	0.00011201	0.067401	2.8524E-05	423.20564931527275	48.28	0.60238	48.28	48.073	48.675	0					21	13	2	0	0	0	0.028476	1	3558	3558		19.36	7.1531	1	309270			12471	9060	10222	10234	13624	13624					-0.031738548106091
FSSTKIESI	9	Unmodified	_FSSTKIESI_					0	0	0			REV__LRIG2|p.V532Gfs*39|1|0.07|ENSG00000198799|chr1:113110359-113110359|T/-|frameshift_variant	REV__LRIG2|p.V532Gfs*39|1|0.07|ENSG00000198799|chr1:113110359-113110359|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	506.2738037109375	2	506.27149	1010.52843	1.7132	0.00086734	2.8503	0.001443	4.5635	0.0023104	506.2727467608177	54.771	2.6321	51.6	50.779	53.411	-3.1715					173	88	3	0	0	0	0.35444	1	1439	1439		56.721	1.2168	1	154000	+		12472	23065	10223	10235	13625	13625					0.02358330486470095
FSTGRVSFVKV	11	Unmodified	_FSTGRVSFVKV_					0	0	0			REV__nc|ENSG00000140374|P13804-2|ETFA	REV__nc|ENSG00000140374|P13804-2|ETFA	MULTI-MSMS	OvCa9_classI_Rep2	2	613.8447875976562	2	613.84823	1225.68191	-1.3186	-0.00080939	-2.2113	-0.0013574	-3.5299	-0.0021668	613.846862023676	60.404	2.094	57.633	57.032	59.126	-2.7702					128	39	6	0	0	0	0.51772	1	4462	4462		35.152	0	1	1043300	+		12473	19664	10224	10236	13626	13626					0.07809365322782469
FSTLNKIAGM	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))FSTLNKIAGM_					1	0	0			REV__nc|ENSG00000110080|Q11206-7|ST3GAL4	REV__nc|ENSG00000110080|Q11206-7|ST3GAL4	MULTI-MSMS	OvCa99_classI_Rep5	1	562.2954711914062	2	562.294442	1122.57433	1.8796	0.0010569	-3.1433	-0.0017675	-1.2638	-0.00071061	562.2929834642777	146.92	0.78777	146.92	146.62	147.41	0					41	15	4	0	0	0	0.50999	1	17204	17204		52.937	6.9847	1	160130	+		12474	17971	10225	10237	13627	13627					0.017946523970749695
FSTPILDL	8	Unmodified	_FSTPILDL_					0	0	0		ENSG00000117000|ENST00000372771|RLF	ENSG00000117000|ENST00000372771|RLF	ENSG00000117000|ENST00000372771|RLF	MULTI-SECPEP	OvCa99_classI_Rep5	1	452.71820068359375	2	453.252569	904.490584	-0.41273	-0.00018707	-2.8549	-0.001294	-3.2677	-0.0014811	453.2512049765134	66.231	0.3956	66.231	66.096	66.491	0					15	9	2	0	0	0	0.028476	1	6119	6119		33.516	0	1	196660			12475	3228	10226	10238	13628	13628					0.03451864291673701
FSTVHEKF	8	Unmodified	_FSTVHEKF_					0	0	0		ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	497.75274658203125	2	497.753267	993.491981	-0.14205	-7.0705E-05	-0.29002	-0.00014436	-0.43207	-0.00021507	497.75295682932983	56.847	0.68289	56.847	56.581	57.264	0					30	15	3	0	0	0	0.57336	1	4742	4742		69.628	6.3214	1	789610			12476	4348	10227	10239	13629	13629					-0.005025016195759235
FSTVTSTVK	9	Unmodified	_FSTVTSTVK_					0	0	0		ENSG00000182934|ENST00000332118|SRPRA;nc|ENSG00000182934|P08240-2|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.26690673828125	2	485.266207	968.517862	-1.2201	-0.00059209	0.36292	0.00017611	-0.85722	-0.00041598	485.2663430336786	72.332	2.0813	68.936	68.569	70.65	-3.3961					119	42	3	0	0	0	0.1804	1	5551	5551		79.713	7.8351	1	2530900			12477	8040	10228	10240	13630	13630					0.032343478320512986
FSTVTSTVK	9	Unmodified	_FSTVTSTVK_					0	0	0		ENSG00000182934|ENST00000332118|SRPRA;nc|ENSG00000182934|P08240-2|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	MULTI-MATCH	OvCa9_classI_Rep3	3		2	485.266207	968.517862	-0.073422	-3.5629E-05	-0.72887	-0.0003537	-0.8023	-0.00038933	485.2657848072441	71.625	0.93755	69.023	68.584	69.521	-2.6023	0.081441	-0.00061954	NaN	79.713	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12290			12478	8040	10228	10240							0.032343478320512986
FSVFDGQVF	9	Unmodified	_FSVFDGQVF_					0	0	0			REV__tr|A0A553SSL9|A0A553SSL9_NIACIDihydrofolatereductaseOS=NialliacirculansOX=1397GN=CEQ21_03225PE=4SV=1	REV__tr|A0A553SSL9|A0A553SSL9_NIACIDihydrofolatereductaseOS=NialliacirculansOX=1397GN=CEQ21_03225PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8046875	2	523.2531	1044.49165	1.2093	0.00063277	-1.511	-0.00079062	-0.30167	-0.00015785	523.2515798180317	92.276	0.88283	92.276	91.92	92.803	0					40	20	3	0	0	0	0.027441	1	9930	9930		55.504	13.03	1	1521500	+		12479	30849	10229	10241	13631	13631					-0.02881921339417204
FSVFGQVERA	10	Unmodified	_FSVFGQVERA_					0	0	0		ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-MSMS	OvCa99_classI_Rep5	1	570.2973022460938	2	570.29583	1138.57711	2.0444	0.0011659	0.36853	0.00021017	2.4129	0.0013761	570.2959784966142	95.635	1.2143	95.635	95.328	96.543	0					67	28	4	0	0	0	6.3833E-06	2	10439	10439;10469		191.45	49.929	1	17768000			12480	5334	10230	10242	13632;13633	13632					0.013362438462309001
FSVFGQVERA	10	Unmodified	_FSVFGQVERA_					0	0	0		ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-MATCH	OvCa9_classI_Rep2	2		2	570.29583	1138.57711	-0.32993	-0.00018816	-0.30223	-0.00017236	-0.63216	-0.00036052	570.2957766738127	96.619	0.88542	95.661	95.331	96.217	-0.95857	0.035336	-0.00023588	NaN	191.45	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94042			12481	5334	10230	10242							0.013362438462309001
FSVFGQVERA	10	Unmodified	_FSVFGQVERA_					0	0	0		ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-MATCH	OvCa9_classI_Rep3	3		2	570.29583	1138.57711	-0.95003	-0.0005418	-5.7371	-0.0032718	-6.6871	-0.0038136	570.292718758309	97.29	0.30925	95.531	95.311	95.62	-1.7595	-0.094897	-0.0064349	NaN	191.45	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26567			12482	5334	10230	10242							0.013362438462309001
FSVFGQVERA	10	Unmodified	_FSVFGQVERA_					0	0	0		ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	570.29583	1138.57711	0.44985	0.00025655	-2.4978	-0.0014245	-2.048	-0.0011679	570.2952049187461	98.054	1.2149	95.676	95.216	96.431	-2.3786	0.050244	-0.0027401	NaN	191.45	54	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100360			12483	5334	10230	10242							0.013362438462309001
FSVGLKQLPT	10	Unmodified	_FSVGLKQLPT_					0	0	0			REV__ENSG00000186566|ENST00000591680|GPATCH8	REV__ENSG00000186566|ENST00000591680|GPATCH8	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3170166015625	2	545.318774	1088.623	-6.9928	-0.0038133	2.7185	0.0014824	-4.2743	-0.0023309	545.3200392463325	162.37	0.78299	161	160.77	161.55	-1.3692					24	16	2	0	0	0	0.762	1	14144	14144		23.523	0.48021	1	36327	+		12484	22599	10231	10243	13634	13634					0.08222889028456848
FSVIQGVTF	9	Unmodified	_FSVIQGVTF_					0	0	0		tr|A0A553STZ4|A0A553STZ4_NIACIAscorbate-specificPTSsystemEIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_06025PE=3SV=1	tr|A0A553STZ4|A0A553STZ4_NIACIAscorbate-specificPTSsystemEIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_06025PE=3SV=1	tr|A0A553STZ4|A0A553STZ4_NIACIAscorbate-specificPTSsystemEIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_06025PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.2721862792969	2	499.271293	996.528032	0.34489	0.0001722	-0.72407	-0.00036151	-0.37917	-0.00018931	499.2708039159593	89.798	1.4152	87.223	86.95	88.365	-2.575					83	27	4	0	0	0	0.14998	1	7722	7722		84.916	16.129	1	2048000			12485	34554	10232	10244	13635	13635					0.02962955557291025
FSVLEQLLL	9	Unmodified	_FSVLEQLLL_					0	0	0			REV__nc|ENSG00000138593|Q93073-2|SECISBP2L	REV__nc|ENSG00000138593|Q93073-2|SECISBP2L	MULTI-MSMS	OvCa99_classI_Rep5	1	531.3171997070312	2	531.3157	1060.61685	0.50627	0.00026899	-0.48502	-0.0002577	0.021257	1.1294E-05	531.3153326904124	161.33	1.868	161.33	160.66	162.53	0					80	36	3	0	0	0	0.24951	1	18900	18900		68.787	0	1	636100	+		12486	19545	10233	10245	13636	13636					0.0889637079694694
FSVNKFKIN	9	Unmodified	_FSVNKFKIN_					0	0	0			REV__tr|A0A7D6VWK5|A0A7D6VWK5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04500PE=4SV=1	REV__tr|A0A7D6VWK5|A0A7D6VWK5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04500PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.3670654296875	2	548.811116	1095.60768	0.61298	0.00033641	-0.995	-0.00054606	-0.38202	-0.00020965	548.8104555498439	68.168	1.0777	64.677	64.284	65.362	-3.4902					32	20	2	0	0	0	0.027453	1	5104	5104		30.318	2.2362	1	125280	+		12487	31750	10234	10246	13637	13637					0.0637002223129457
FSVTGRVL	8	Unmodified	_FSVTGRVL_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	OvCa99_classI_Rep5	1	439.7601013183594	2	439.758352	877.502152	3.557	0.0015642	-0.86295	-0.00037949	2.694	0.0011847	439.7578788763787	86.182	1.0187	86.182	85.954	86.972	0					48	24	3	0	0	0	0.40148	1	9070	9070		87.754	10.908	1	4615900			12488	2296	10235	10247	13638	13638					0.058501061056517756
FSWKKKRI	8	Unmodified	_FSWKKKRI_					0	0	0			REV__ENST00000563939.2_1_16:67063920-67070621:+|nuORF	REV__ENST00000563939.2_1_16:67063920-67070621:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	546.8372192382812	2	546.837468	1091.66038	-0.48123	-0.00026316	-3.4905	-0.0019087	-3.9717	-0.0021719	546.8354871258746	55.936	0.93896	55.936	55.599	56.538	0					53	22	4	0	0	0	0.72896	1	4638	4638		37.159	2.9866	1	2463800	+		12489	27662	10236	10248	13639	13639					0.11822025084757115
FSWNYNWPRRR	11	Unmodified	_FSWNYNWPRRR_					0	0	0		chr7:77282785-77287440|178|15.66|0.2|6.27|+|1|CCDC146,CCDC146|2	chr7:77282785-77287440|178|15.66|0.2|6.27|+|1|CCDC146,CCDC146|2	chr7:77282785-77287440|178|15.66|0.2|6.27|+|1|CCDC146,CCDC146|2	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3317260742188	3	527.932248	1580.77491	-0.38628	-0.00020393	-3.6798	-0.0019427	-4.0661	-0.0021466	528.2647962032192	51.056	0.34465	51.056	50.819	51.164	0					9	7	2	0	0	0	0.026383	1	3917	3917		5.4129	0	1	232150			12490	533	10237	10249	13640	13640					0.007756828287256212
FSYLTKHKIIH	11	Unmodified	_FSYLTKHKIIH_					0	0	0		ENSG00000172687|ENST00000683779|ZNF738;ENST00000594254.1_1_19:21565732-21566473:+|nuORF;ENSG00000118620|ENST00000261560|ZNF430;ENSG00000160352|ENST00000456283|ZNF714;nc|ENSG00000160352|Q96N38|ZNF714;ENST00000601416.1_19:21281704-21301132:+|nuORF;nc|ENSG00000160352|Q96N38-2|ZNF714;nc|ENSG00000160352|Q96N38-3|ZNF714;ENST00000600692.5_1_19:21350445-21366834:+|nuORF;ENSG00000196705|ENST00000311048|ZNF431	ENSG00000172687|ENST00000683779|ZNF738;ENST00000600692.5_1_19:21350445-21366834:+|nuORF	ENST00000600692.5_1_19:21350445-21366834:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	462.9369201660156	3	462.934595	1385.78196	0.079191	3.666E-05	4.2837	0.0019831	4.3629	0.0020197	462.9367014144655	44.408	4.3763	41.698	41.303	45.679	-2.7097					263	87	6	0	0	0	0.69308	1	2658	2658		32.034	4.3902	1	4456400			12491	8644;7313	10238	10250	13641	13641					0.10449602656603929
FSYQRSLP	8	Unmodified	_FSYQRSLP_					0	0	0		ENST00000295404.9_1_19:50200719-50213852:+|nuORF;nc|ENSG00000169169|Q8TCG5-3|CPT1C;nc|ENSG00000169169|Q8TCG5-2|CPT1C;ENSG00000169169|ENST00000598293|CPT1C	ENST00000295404.9_1_19:50200719-50213852:+|nuORF	ENST00000295404.9_1_19:50200719-50213852:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.2813720703125	2	499.258717	996.50288	0.3404	0.00016995	2.4136	0.001205	2.754	0.001375	499.2598423843434	131.76	0.43993	131.53	131.2	131.64	-0.22696					12	8	2	0	0	0	0.028476	1	12997	12997		60.972	0	1	9166.3			12492	6981	10239	10251	13642	13642					0.004489007547249457
FSYQRSLP	8	Unmodified	_FSYQRSLP_					0	0	0		ENST00000295404.9_1_19:50200719-50213852:+|nuORF;nc|ENSG00000169169|Q8TCG5-3|CPT1C;nc|ENSG00000169169|Q8TCG5-2|CPT1C;ENSG00000169169|ENST00000598293|CPT1C	ENST00000295404.9_1_19:50200719-50213852:+|nuORF	ENST00000295404.9_1_19:50200719-50213852:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	499.258717	996.50288	-0.33983	-0.00016967	0.17705	8.8395E-05	-0.16278	-8.127E-05	499.2576169540687	132.36	0.59782	131.23	130.84	131.44	-1.1249	-0.10872	-0.00075696	NaN	60.972	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10175			12493	6981	10239	10251							0.004489007547249457
FTAAALAEEP	10	Unmodified	_FTAAALAEEP_					0	0	0		ENSG00000215421|ENST00000299687|ZNF407;ENST00000579200.1_1_18:72775002-72776421:+|nuORF	ENSG00000215421|ENST00000299687|ZNF407;ENST00000579200.1_1_18:72775002-72776421:+|nuORF	ENSG00000215421|ENST00000299687|ZNF407	MULTI-MSMS	OvCa99_classI_Rep5	1	510.25482177734375	2	510.25584	1018.49713	2.627	0.0013405	-3.8332	-0.0019559	-1.2062	-0.00061545	510.2536337895911	75.63	0.35668	75.63	75.407	75.764	0					11	8	2	0	0	0	0.6104	1	7542	7542		40.778	0.20554	1	810610			12494	9206;13977	10240	10252	13643	13643					-0.011382425476199387
FTAAALAEEP	10	Unmodified	_FTAAALAEEP_					0	0	0		ENSG00000215421|ENST00000299687|ZNF407;ENST00000579200.1_1_18:72775002-72776421:+|nuORF	ENSG00000215421|ENST00000299687|ZNF407;ENST00000579200.1_1_18:72775002-72776421:+|nuORF	ENSG00000215421|ENST00000299687|ZNF407	MULTI-MATCH	OvCa9_classI_Rep3	3		2	510.25584	1018.49713	-0.59546	-0.00030384	-9.8337	-0.0050177	-10.429	-0.0053215	510.25084064772597	78.178	0.5533	75.826	75.647	76.2	-2.3527	0.097904	-0.0034274	NaN	40.778	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16879			12495	9206;13977	10240	10252							-0.011382425476199387
FTADFVRQLLI	11	Unmodified	_FTADFVRQLLI_					0	0	0		nc|ENSG00000157106|Q96Q15-4|SMG1;nc|ENSG00000157106|Q96Q15-3|SMG1;nc|ENSG00000157106|Q96Q15-2|SMG1;ENSG00000157106|ENST00000446231|SMG1	nc|ENSG00000157106|Q96Q15-4|SMG1	nc|ENSG00000157106|Q96Q15-4|SMG1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	441.24676513671875	3	441.587084	1321.73942	-1.2395	-0.00054735	-2.265	-0.0010002	-3.5045	-0.0015475	441.5860229947121	55.406	0.45753	52.112	51.803	52.26	-3.2944					13	8	2	0	0	0	0.025864	1	3455	3455		28.577	0	1	11629			12496	5874	10241	10253	13644	13644					0.0914220752838446
FTAHQCSSCS	10	Unmodified	_FTAHQCSSCS_					0	0	0			REV__ENSG00000113905|ENST00000232003|HRG	REV__ENSG00000113905|ENST00000232003|HRG	MULTI-MSMS	OvCa99_classI_Rep5	1	535.7052001953125	2	535.705134	1069.39571	0.075247	4.031E-05	-1.539	-0.00082447	-1.4638	-0.00078416	535.7046923108967	32.378	2.337	32.378	32.154	34.491	0					100	47	6	0	0	0	0.53885	1	1402	1402		49.442	12.282	1	5207200	+		12497	18174	10242	10254	13645	13645					-0.136207605134814
FTAISTQVIF	10	Unmodified	_FTAISTQVIF_					0	0	0		tr|A0A7D6VWX0|A0A7D6VWX0_9CLOTAcyltransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05755PE=4SV=1	tr|A0A7D6VWX0|A0A7D6VWX0_9CLOTAcyltransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05755PE=4SV=1	tr|A0A7D6VWX0|A0A7D6VWX0_9CLOTAcyltransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05755PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.2063598632812	2	563.810782	1125.60701	2.4792	0.0013978	-2.0669	-0.0011654	0.41229	0.00023245	563.8091943159268	110.67	0.97789	110.67	110.45	111.42	0					29	21	2	0	0	0	0.026688	1	12600	12600		40.778	1.5253	1	325420			12498	35262	10243	10255	13646	13646					0.04923182791549152
FTAIVLTY	8	Unmodified	_FTAIVLTY_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000534048.1_1_11:44151622-44219579:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.2331237792969	2	464.262936	926.51132	-0.96718	-0.00044903	-1.7925	-0.00083221	-2.7597	-0.0012812	464.2619316658152	34.344	0.75246	34.344	34.065	34.818	0					32	15	3	0	0	0	0.028476	1	1660	1660		31.955	12.595	1	126990			12499	5548	10244	10256	13647	13647					0.04512454671328214
FTAQYLGLN	9	Unmodified	_FTAQYLGLN_					0	0	0			REV__ENST00000454990.5_1_14:45705052-45705100:-|nuORF	REV__ENST00000454990.5_1_14:45705052-45705100:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	513.7695922851562	2	513.766374	1025.5182	2.2837	0.0011733	-0.60856	-0.00031266	1.6751	0.00086063	513.7662210036555	108.15	1.0298	108.15	107.86	108.89	0					48	23	3	0	0	0	0.37135	1	12234	12234		54.776	3.4409	1	2398600	+		12500	26012	10245	10257	13648	13648					0.0064576755189591495
FTARIFPDANS	11	Unmodified	_FTARIFPDANS_					0	0	0		tr|A0A553SJ68|A0A553SJ68_NIACISucrose-6-phosphatehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_16210PE=3SV=1	tr|A0A553SJ68|A0A553SJ68_NIACISucrose-6-phosphatehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_16210PE=3SV=1	tr|A0A553SJ68|A0A553SJ68_NIACISucrose-6-phosphatehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_16210PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	619.8699340820312	2	619.811845	1237.60914	-4.172	-0.0025859	-4.3527	-0.0026979	-8.5248	-0.0052837	619.8090689410861	153.25	0.52162	152.27	151.99	152.51	-0.97299					18	10	2	0	0	0	0.025955	1	13079	13079		13.508	0	1	20994			12501	33466	10246	10258	13649	13649					-0.0001638847061258275
FTATSASRVRA	11	Unmodified	_FTATSASRVRA_					0	0	0		chr3:128622409-128624714|115|61.39|0.19|8.35|-|0|TE_info:AluSc,AluSc_dup6791,Alu,SINE,donor,+,128624714,128624845|RPN1,None|1	chr3:128622409-128624714|115|61.39|0.19|8.35|-|0|TE_info:AluSc,AluSc_dup6791,Alu,SINE,donor,+,128624714,128624845|RPN1,None|1	chr3:128622409-128624714|115|61.39|0.19|8.35|-|0|TE_info:AluSc,AluSc_dup6791,Alu,SINE,donor,+,128624714,128624845|RPN1,None|1	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8165893554688	2	583.817461	1165.62037	-2.0009	-0.0011681	-1.5597	-0.00091061	-3.5606	-0.0020787	583.816415272618	81.845	2.948	79.543	78.666	81.614	-2.3016					145	59	4	0	0	0	0.43993	1	4617	4617		58.23	8.7884	1	2106500			12502	470	10247	10259	13650	13650					0.04418433623527562
FTATVLLLL	9	Unmodified	_FTATVLLLL_					0	0	0		ENSG00000204323|ENST00000375215|SMIM5	ENSG00000204323|ENST00000375215|SMIM5	ENSG00000204323|ENST00000375215|SMIM5	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.2710266113281	2	495.815336	989.616119	-0.91379	-0.00045307	-2.2157	-0.0010986	-3.1295	-0.0015516	495.8141798921269	50.321	0.39502	50.321	50.156	50.551	0					10	8	2	0	0	0	0.027462	1	3800	3800		30.504	0	1	111700			12503	8969	10248	10260	13651	13651					0.12089576147900516
FTAVILMII	9	Unmodified	_FTAVILMII_					0	0	0		ENST00000552801.6_1_12:112369427-112370497:-|nuORF	ENST00000552801.6_1_12:112369427-112370497:-|nuORF	ENST00000552801.6_1_12:112369427-112370497:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.813232421875	2	510.811739	1019.60893	1.1975	0.00061168	2.2274	0.0011378	3.4249	0.0017495	510.81271666238405	129.4	1.3345	127.95	127.5	128.83	-1.4565					56	26	3	0	0	0	0.42057	1	12374	12374		50.025	4.0726	1	185240			12504	13614	10249	10261	13652	13652					0.09990520275823656
FTCCEQTQSS	10	Unmodified	_FTCCEQTQSS_					0	0	0			REV__ENST00000505226.1_1_6:83748090-83767722:-|nuORF	REV__ENST00000505226.1_1_6:83748090-83767722:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.2800903320312	2	567.215531	1132.41651	2.5012	0.0014187	2.9069	0.0016489	5.4082	0.0030676	567.7180162398458	108.29	0.25523	108.29	108.07	108.32	0					10	5	3	0	0	0	0.026891	1	12226	12226		31.53	9.5699	1	199990	+		12505	18395	10250	10262	13653	13653					-0.14440214924479733
FTCEIEMLL	9	Unmodified	_FTCEIEMLL_					0	0	0		nc|ENSG00000095319|Q5SRE5-2|NUP188;ENSG00000095319|ENST00000372577|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	MULTI-MSMS	OvCa99_classI_Rep5	1	549.7630004882812	2	549.764129	1097.5137	1.0082	0.00055426	0.7903	0.00043448	1.7985	0.00098874	549.7642897467599	149.63	2.5698	149.63	149.31	151.88	0					74	51	2	0	0	0	0.29717	1	17547	17547		63.306	9.9548	1	363850			12506	1924	10251	10263	13654	13654					-0.031152009775269107
FTCFIEKDIA	10	Unmodified	_FTCFIEKDIA_					0	0	0		tr|A0A553SLR6|A0A553SLR6_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_21140PE=4SV=1	tr|A0A553SLR6|A0A553SLR6_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_21140PE=4SV=1	tr|A0A553SLR6|A0A553SLR6_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_21140PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	593.7913208007812	2	593.794275	1185.574	1.5634	0.00092831	-4.2941	-0.0025498	-2.7307	-0.0016215	593.7916196577046	147.53	3.1371	147.53	147.21	150.34	0					152	63	5	0	0	0	0.39172	1	17340	17340		69.628	2.134	1	2457000			12507	33756	10252	10264	13655	13655					-0.011367673227823616
FTCKSYLISH	10	Unmodified	_FTCKSYLISH_					0	0	0		nc|ENSG00000152454|Q9Y2P7-2|ZNF256;ZNF256|p.R517Sfs*103|1|0.06|ENSG00000152454|chr19:57941257-57941257|C/-|frameshift_variant;ENSG00000152454|ENST00000282308|ZNF256;ENST00000598928.1_1_19:58452294-58458975:-|nuORF	nc|ENSG00000152454|Q9Y2P7-2|ZNF256	nc|ENSG00000152454|Q9Y2P7-2|ZNF256	MULTI-MSMS	OvCa99_classI_Rep5	1	599.80224609375	2	599.799891	1197.58523	1.866	0.0011192	3.306	0.0019829	5.172	0.0031022	599.8017676798917	129.29	2.8297	129.29	128.84	131.67	0					131	59	3	0	0	0	0.44431	1	14978	14978		62.107	1.7038	1	262510			12508	5623	10253	10265	13656	13656					-0.005659452286636224
FTCLLKNVF	9	Unmodified	_FTCLLKNVF_					0	0	0		ENSG00000153283|ENST00000352690|CD96;nc|ENSG00000153283|P40200|CD96	ENSG00000153283|ENST00000352690|CD96	ENSG00000153283|ENST00000352690|CD96	MULTI-MSMS	OvCa9_classI_Rep3	3	542.7974853515625	2	542.79662	1083.57869	-2.5657	-0.0013927	3.9068	0.0021206	1.341	0.00072792	542.7985901751956	143.31	1.137	142.32	141.94	143.08	-0.9903					51	22	3	0	0	0	0.52083	1	11912	11912		40.573	10.069	1	119450			12509	5674	10254	10266	13657	13657					0.040241616106186484
FTCSVTYYGPS	11	Unmodified	_FTCSVTYYGPS_					0	0	0		ENST00000481337.5_1_3:105238990-105260608:+|nuORF;nc|ENSG00000170017|Q13740-4|ALCAM;nc|ENSG00000170017|Q13740-2|ALCAM;ENSG00000170017|ENST00000306107|ALCAM	ENST00000481337.5_1_3:105238990-105260608:+|nuORF	ENST00000481337.5_1_3:105238990-105260608:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	612.8152465820312	2	612.765714	1223.51688	-0.51104	-0.00031315	3.5544	0.002178	3.0433	0.0018648	612.7668720122189	59.677	0.19086	59.677	59.611	59.802	0					6	4	2	0	0	0	0.025861	1	5170	5170		17.468	0	1	166990			12510	7065	10255	10267	13658	13658					-0.0859423459919526
FTDAGLKEL	9	Unmodified	_FTDAGLKEL_					0	0	0		ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-MSMS	OvCa99_classI_Rep5	1	497.2674560546875	2	497.266207	992.517862	1.9093	0.00094945	0.12112	6.0231E-05	2.0305	0.0010097	497.2661073024556	85.152	0.78137	85.152	84.882	85.663	0					39	18	3	0	0	0	0.014622	1	8923	8923		154.12	31.942	1	1932600			12511	4478	10256	10268	13659	13659					0.02130347832053303
FTDEKSIGLK	10	Unmodified	_FTDEKSIGLK_					0	0	0			REV__tr|A0A7D6VRI4|A0A7D6VRI4_9CLOTHADfamilyhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12320PE=4SV=1	REV__tr|A0A7D6VRI4|A0A7D6VRI4_9CLOTHADfamilyhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12320PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2905883789062	2	569.311146	1136.60774	-0.47005	-0.0002676	-0.31947	-0.00018188	-0.78952	-0.00044948	569.3108135631035	53.74	0.41051	53.74	53.519	53.929	0					19	9	3	0	0	0	0.026891	1	4278	4278		31.53	3.6476	1	568730	+		12512	31420	10257	10269	13660	13660					0.044899774406076176
FTDLDTLPPS	10	Unmodified	_FTDLDTLPPS_					0	0	0		ENST00000555457.5_1_14:77928552-77935440:+|nuORF	ENST00000555457.5_1_14:77928552-77935440:+|nuORF	ENST00000555457.5_1_14:77928552-77935440:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.306640625	2	553.274229	1104.53391	-0.51777	-0.00028647	-0.23985	-0.0001327	-0.75762	-0.00041917	553.2738385897508	38.415	0.41199	38.415	38.207	38.619	0					15	8	3	0	0	0	0.026802	1	2155	2155		26.693	0	1	75988			12513	13647	10258	10270	13661	13661					-0.014179907216885113
FTDSRERA	8	Unmodified	_FTDSRERA_					0	0	0			REV__nc|ENSG00000162909|P17655-2|CAPN2	REV__nc|ENSG00000162909|P17655-2|CAPN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.77484130859375	2	491.241055	980.467557	-0.81061	-0.0003982	0.43665	0.0002145	-0.37396	-0.0001837	491.2407592434653	33.857	0.33627	33.857	33.681	34.017	0					13	6	3	0	0	0	0.028476	1	1588	1588		42.474	21.993	1	86959	+		12514	20791	10259	10271	13662	13662					-0.023457617730855418
FTEAGLKEL	9	Unmodified	_FTEAGLKEL_					0	0	0		nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1	nc|ENSG00000082153|Q7L1Q6-2|BZW1	nc|ENSG00000082153|Q7L1Q6-2|BZW1	MULTI-MSMS	OvCa99_classI_Rep5	1	504.2762145996094	2	504.274032	1006.53351	2.1946	0.0011067	2.2494	0.0011343	4.444	0.002241	504.27503060265195	84.069	0.87531	84.069	83.714	84.589	0					62	20	5	0	0	0	0.033166	1	8776	8776		132.76	10.582	1	4643900			12515	1671	10260	10272	13663	13663					0.0305063434910835
FTEAGRYI	8	Unmodified	_FTEAGRYI_					0	0	0		tr|A0A7D6ZJ16|A0A7D6ZJ16_9CLOTCollagen-likeproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09515PE=4SV=1	tr|A0A7D6ZJ16|A0A7D6ZJ16_9CLOTCollagen-likeproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09515PE=4SV=1	tr|A0A7D6ZJ16|A0A7D6ZJ16_9CLOTCollagen-likeproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09515PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	478.74658203125	2	478.745442	955.476331	3.4038	0.0016296	-0.97948	-0.00046892	2.4244	0.0011607	478.7448132934741	88.529	0.82771	88.529	88.255	89.082	0					41	19	3	0	0	0	0.68714	1	9440	9440		45.952	3.4775	1	3666200			12516	35633	10261	10273	13664	13664					-0.003187881366102374
FTEDILSLL	9	Unmodified	_FTEDILSLL_					0	0	0			REV__tr|A0A553SST3|A0A553SST3_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03620PE=4SV=1	REV__tr|A0A553SST3|A0A553SST3_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03620PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	525.7891845703125	2	525.789515	1049.56448	2.0526	0.0010793	-3.177	-0.0016704	-1.1244	-0.00059119	525.7876675090548	84.257	0.91827	84.257	83.671	84.589	0					47	21	3	0	0	0	0.38529	1	8803	8803		53.351	7.3995	1	1369600	+		12517	30878	10262	10274	13665	13665					0.04167787663368472
FTEETSKLI	9	Unmodified	_FTEETSKLI_					0	0	0		tr|A0A7D6VPN3|A0A7D6VPN3_9CLOTAECfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17530PE=3SV=1	tr|A0A7D6VPN3|A0A7D6VPN3_9CLOTAECfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17530PE=3SV=1	tr|A0A7D6VPN3|A0A7D6VPN3_9CLOTAECfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17530PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	534.2872314453125	2	534.284597	1066.55464	-0.82893	-0.00044288	4.1845	0.0022357	3.3556	0.0017928	534.2867400173012	66.018	0.95216	66.018	65.748	66.7	0					58	23	5	0	0	0	0.37135	1	6121	6121		54.776	12.38	1	19820000			12518	34781	10263	10275	13666	13666					0.02402599657943938
FTEKKVLKL	9	Unmodified	_FTEKKVLKL_					0	0	0			REV__ENSG00000139209|ENST00000266579|SLC38A4	REV__ENSG00000139209|ENST00000266579|SLC38A4	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.79248046875	2	553.352617	1104.69068	1.8378	0.001017	-2.3982	-0.0013271	-0.56044	-0.00031012	553.3511436901235	65.536	1.3454	62.84	62.57	63.915	-2.6958					67	26	4	0	0	0	0.027462	1	5070	5070		36.447	3.6343	1	115990	+		12519	19597	10264	10276	13667	13667					0.14252338959272493
FTENFTEY	8	Unmodified	_FTENFTEY_					0	0	0			REV__tr|A0A553SG20|A0A553SG20_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_09945PE=4SV=1	REV__tr|A0A553SG20|A0A553SG20_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_09945PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.3212890625	2	525.724372	1049.43419	0.21926	0.00011527	1.8153	0.00095436	2.0346	0.0010696	525.724476742379	110.54	0.26299	108.94	108.75	109.02	-1.6011					5	4	2	0	0	0	0.028476	1	10158	10158		40.573	1.7665	1	6044.6	+		12520	29649	10265	10277	13668	13668					-0.08854808335672715
FTETCQLMIM	10	Unmodified	_FTETCQLMIM_					0	0	0			REV__nc|ENSG00000146857|Q7Z7C7|STRA8	REV__nc|ENSG00000146857|Q7Z7C7|STRA8	MULTI-SECPEP	OvCa99_classI_Rep5	1	608.356689453125	2	608.77417	1215.53379	1.8863	0.0011483	0.30701	0.0001869	2.1933	0.0013352	608.7748484051453	127.7	0.27669	127.7	127.58	127.86	0					7	5	2	0	0	0	0.027142	1	14803	14803		15.642	0	1	52992	+		12521	20032	10266	10278	13669	13669					-0.06535773309246906
FTETSAIIK	9	Unmodified	_FTETSAIIK_					0	0	0			REV__tr|A0A7D6VPI6|A0A7D6VPI6_9CLOTGlycosyltransferasefamily4proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18765PE=4SV=1	REV__tr|A0A7D6VPI6|A0A7D6VPI6_9CLOTGlycosyltransferasefamily4proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18765PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.60345458984375	2	505.281857	1008.54916	-0.12269	-6.1994E-05	0.79748	0.00040295	0.67479	0.00034096	505.28210291344845	30.458	0.49744	30.458	30.334	30.831	0					14	9	2	0	0	0	0.027462	1	1163	1163		23.042	16.73	1	46289	+		12522	31250	10267	10279	13670	13670					0.04522920866145341
FTEWFLKV	8	Unmodified	_FTEWFLKV_					0	0	0			REV__ENSG00000138641|ENST00000402738|HERC3	REV__ENSG00000138641|ENST00000402738|HERC3	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.3076171875	2	535.289485	1068.56442	0.14165	7.5826E-05	-4.2396	-0.0022694	-4.098	-0.0021936	535.2861950983834	70.92	0.42772	70.92	70.603	71.031	0					20	10	3	0	0	0	0.028476	1	6844	6844		18.324	4.5491	1	736300	+		12523	19551	10268	10280	13671	13671					0.032878324539979076
FTFCETVGNI	10	Unmodified	_FTFCETVGNI_					0	0	0			REV__ENSG00000163933|ENST00000296292|RFT1	REV__ENSG00000163933|ENST00000296292|RFT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.81103515625	2	565.762975	1129.5114	1.9387	0.0010968	-0.32435	-0.00018351	1.6143	0.00091332	566.2639529609949	87.482	0.74706	87.482	87.174	87.921	0					48	17	4	0	0	0	0.026493	1	9289	9289		74.255	24.719	1	1225200	+		12524	20914	10269	10281	13672	13672					-0.04817913390979811
FTFELTFINV	10	Unmodified	_FTFELTFINV_					0	0	0			REV__ENST00000479971.1_1_12:72291642-72301148:+|nuORF	REV__ENST00000479971.1_1_12:72291642-72301148:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	615.8284301757812	2	615.823889	1229.63323	0.98553	0.00060692	4.4242	0.0027246	5.4098	0.0033315	615.8265545245539	80.841	2.0776	78.519	78.131	80.209	-2.3226					126	40	5	0	0	0	0.28845	1	4482	4482		82.241	7.9855	1	2601000	+		12525	26447	10270	10282	13673	13673					0.02759451963038373
FTFGAGKH	8	Unmodified	_FTFGAGKH_					0	0	0		ENSG00000138646|ENST00000264350|HERC5	ENSG00000138646|ENST00000264350|HERC5	ENSG00000138646|ENST00000264350|HERC5	MULTI-MSMS	OvCa99_classI_Rep5	1	432.72265625	2	432.72177	863.428987	0.017958	7.7709E-06	0.19774	8.5565E-05	0.21569	9.3336E-05	432.72167454907265	48.699	0.87457	48.699	48.412	49.287	0					35	19	3	0	0	0	0.73288	1	3584	3584		35.201	3.2459	1	1588900			12526	4704	10271	10283	13674	13674					-0.0081902261695177
FTFGWTGTIW	10	Unmodified	_FTFGWTGTIW_					0	0	0		ENSG00000168917|ENST00000446465|SLC35G2	ENSG00000168917|ENST00000446465|SLC35G2	ENSG00000168917|ENST00000446465|SLC35G2	MULTI-MSMS	OvCa9_classI_Rep2	2	608.2973022460938	2	608.295299	1214.57605	-0.93087	-0.00056624	3.3474	0.0020362	2.4165	0.0014699	608.2971907887074	58.323	2.9269	55.538	54.93	57.857	-2.7848					145	56	4	0	0	0	0.66721	1	4230	4230		34.173	2.6427	1	664310			12527	6955	10272	10284	13675	13675					-0.022659705226715232
FTFIGKINPNR	11	Unmodified	_FTFIGKINPNR_					0	0	0			REV__tr|A0A553SJ28|A0A553SJ28_NIACI8-oxo-dGTPdiphosphataseOS=NialliacirculansOX=1397GN=CEQ21_15990PE=4SV=1	REV__tr|A0A553SJ28|A0A553SJ28_NIACI8-oxo-dGTPdiphosphataseOS=NialliacirculansOX=1397GN=CEQ21_15990PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	436.26055908203125	3	436.247062	1305.71936	-0.090638	-3.954E-05	0.58275	0.00025422	0.49211	0.00021468	436.24591489167136	64.194	0.68298	61.469	61.128	61.811	-2.7245					28	12	4	0	0	0	0.025568	1	4857	4857		33.039	0.28887	1	39243	+		12528	29958	10273	10285	13676	13676					0.07872456588393106
FTFKICITQS	10	Unmodified	_FTFKICITQS_					0	0	0			REV__ENST00000261427.9_1_4:39781176-39781323:+|nuORF	REV__ENST00000261427.9_1_4:39781176-39781323:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.2918701171875	2	594.310092	1186.60563	2.0653	0.0012274	-1.4147	-0.00084077	0.65056	0.00038664	594.3089852235652	78.144	0.20266	78.144	78.011	78.214	0					6	4	2	0	0	0	0.026994	1	7916	7916		19.104	0	1	254750	+		12529	23948	10274	10286	13677	13677					0.01979225431159648
FTFLILRLP	9	Unmodified	_FTFLILRLP_					0	0	0		ENSG00000277932|ENST00000610445|OR52E5	ENSG00000277932|ENST00000610445|OR52E5	ENSG00000277932|ENST00000610445|OR52E5	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.3446655273438	2	560.349877	1118.6852	0.50861	0.000285	-3.6052	-0.0020202	-3.0966	-0.0017352	560.347730689331	52.895	1.0825	52.895	52.61	53.692	0					30	24	2	0	0	0	0.027462	1	4154	4154		7.1934	0	1	619540			12530	9587	10275	10287	13678	13678					0.13060660167457172
FTFLQTLIF	9	Unmodified	_FTFLQTLIF_					0	0	0		ENST00000280258.5_1_11:86519997-86520249:+|nuORF	ENST00000280258.5_1_11:86519997-86520249:+|nuORF	ENST00000280258.5_1_11:86519997-86520249:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	565.3208618164062	2	565.318243	1128.62193	-1.1079	-0.00062631	3.2324	0.0018273	2.1245	0.001201	565.3199879177456	61.149	1.9033	58.39	57.777	59.68	-2.7593					114	36	4	0	0	0	0.44568	1	4542	4542		47.657	8.8512	1	380010			12531	10042	10276	10288	13679	13679					0.06276674659557102
FTFLQTLIF	9	Unmodified	_FTFLQTLIF_					0	0	0		ENST00000280258.5_1_11:86519997-86520249:+|nuORF	ENST00000280258.5_1_11:86519997-86520249:+|nuORF	ENST00000280258.5_1_11:86519997-86520249:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.3212890625	2	565.318243	1128.62193	0.91166	0.00051538	1.144	0.00064674	2.0557	0.0011621	565.3187717498485	62.062	1.6451	58.604	58.336	59.981	-3.4577					104	33	4	0	0	0	0.35444	1	4292	4292		56.721	17.468	1	975150			12532	10042	10276	10288	13680	13680					0.06276674659557102
FTFLRQELP	9	Unmodified	_FTFLRQELP_					0	0	0		ENST00000508960.1_1_17:48172799-48174929:+|nuORF;ENST00000505897.5_1_17:48172799-48183513:+|nuORF;ENSG00000005882|ENST00000503176|PDK2	ENST00000508960.1_1_17:48172799-48174929:+|nuORF	ENST00000508960.1_1_17:48172799-48174929:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.818603515625	2	575.816399	1149.61824	-0.88976	-0.00051234	3.3502	0.0019291	2.4605	0.0014168	575.8182150623272	93.926	1.9141	91.419	91.059	92.973	-2.5072					94	39	4	0	0	0	0.46377	1	8235	8235		45.952	6.6991	1	736500			12533	862	10277	10289	13681	13681					0.04942004885697315
FTFNAVQTR	9	Unmodified	_FTFNAVQTR_					0	0	0			REV__ENSG00000138653|ENST00000264363|NDST4	REV__ENSG00000138653|ENST00000264363|NDST4	MULTI-MSMS	OvCa99_classI_Rep5	1	542.2852172851562	2	542.282723	1082.55089	1.9509	0.0010579	3.8453	0.0020852	5.7962	0.0031432	542.2847300039213	77.627	1.4541	77.627	76.639	78.093	0					70	34	3	0	0	0	0.48324	1	7861	7861		44.117	3.3386	1	2182100	+		12534	19555	10278	10290	13682	13682					0.012919746747456884
FTFNKQAT	8	Unmodified	_FTFNKQAT_					0	0	0			REV__ENST00000257637.7_1_7:86825683-86825761:-|nuORF	REV__ENST00000257637.7_1_7:86825683-86825761:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	478.7465515136719	2	478.745442	955.476331	3.4038	0.0016296	-0.97948	-0.00046892	2.4244	0.0011607	478.7448132934741	88.529	0.82771	88.529	88.255	89.082	0					41	19	3	0	0	0	0.50747	1	9408	9408		76.774	0	1	3666200	+		12535	23902	10279	10291	13683	13683					-0.003187881366329748
FTFPRDHKS	9	Unmodified	_FTFPRDHKS_					0	0	0		nc|ENSG00000121350|Q8WU10-2|PYROXD1;ENSG00000121350|ENST00000240651|PYROXD1;ENST00000536851.1_1_12:21613985-21615680:+|nuORF	nc|ENSG00000121350|Q8WU10-2|PYROXD1	nc|ENSG00000121350|Q8WU10-2|PYROXD1	MULTI-SECPEP	OvCa9_classI_Rep2	2	567.806884765625	2	567.788173	1133.56179	-0.88049	-0.00049993	1.3967	0.00079304	0.51623	0.00029311	567.7883404011418	69.097	0.74971	66.476	66.316	67.066	-2.6203					19	14	2	0	0	0	0.027462	1	5542	5542		31.53	0	1	17028			12536	3479	10280	10292	13684	13684					0.0003537704901646066
FTFTHIFF	8	Unmodified	_FTFTHIFF_					0	0	0			REV__ENSG00000176798|ENST00000641819|OR51L1	REV__ENSG00000176798|ENST00000641819|OR51L1	MULTI-SECPEP	OvCa9_classI_Rep2	2	530.8173828125	2	530.268553	1058.52255	-0.19007	-0.00010079	3.263	0.0017303	3.0729	0.0016295	530.2699892107719	71.565	0.73265	69.057	68.805	69.537	-2.5071					18	13	2	0	0	0	0.028476	1	5803	5803		44.531	0	1	15312	+		12537	21970	10281	10293	13685	13685					-0.004367232345202865
FTGAKVHEPH	10	Unmodified	_FTGAKVHEPH_					0	0	0			REV__tr|A0A7D7A424|A0A7D7A424_9CLOTDabbfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01555PE=4SV=1	REV__tr|A0A7D7A424|A0A7D7A424_9CLOTDabbfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01555PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.3450317382812	2	561.788173	1121.56179	0.9657	0.00054252	-2.3751	-0.0013343	-1.4094	-0.00079178	561.7862393584327	66.761	0.2794	66.761	66.619	66.898	0					9	6	2	0	0	0	0.026782	1	6221	6221		37.812	16.865	1	222210	+		12538	32599	10282	10294	13686	13686					0.005873770490552488
FTGIVIPLFI	10	Unmodified	_FTGIVIPLFI_					0	0	0			REV__tr|A0A7D6VPQ1|A0A7D6VPQ1_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23830PE=3SV=1	REV__tr|A0A7D6VPQ1|A0A7D6VPQ1_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23830PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.3386840820312	2	560.344261	1118.67397	-5.405	-0.0030286	-1.7878	-0.0010018	-7.1928	-0.0040304	560.3432112723539	161.88	2.7705	160.26	159.52	162.29	-1.6239					146	74	5	0	0	0	0.75594	1	16055	16055		24.203	2.2429	1	403070	+		12539	31265	10283	10295	13687	13687					0.11937838073322382
FTGLRLANKFV	11	Unmodified	_FTGLRLANKFV_					0	0	0			REV__nc|ENSG00000102312|Q9H237-5|PORCN	REV__nc|ENSG00000102312|Q9H237-5|PORCN	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3687744140625	2	633.371872	1264.72919	-4.5141	-0.0028591	0.26314	0.00016666	-4.251	-0.0026925	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.71191	1	15635	15635		25.574	6.2141	1	369460	+		12540	17547	10284	10296	13688	13688					0.1074164459378153
FTGLRLANKFV	11	Unmodified	_FTGLRLANKFV_					0	0	0			REV__nc|ENSG00000102312|Q9H237-5|PORCN	REV__nc|ENSG00000102312|Q9H237-5|PORCN	MULTI-MSMS	OvCa9_classI_Rep3	3	633.369140625	2	633.371872	1264.72919	-4.8823	-0.0030923	0.81247	0.0005146	-4.0699	-0.0025777	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.72473	1	13135	13135		19.104	0	1	765700	+		12541	17547	10284	10296	13689	13689					0.1074164459378153
FTGPNLQLQ	9	Unmodified	_FTGPNLQLQ_					0	0	0			REV__nc|ENSG00000172845|Q02447-4|SP3	REV__nc|ENSG00000172845|Q02447-4|SP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7490539550781	2	509.271824	1016.5291	-0.43298	-0.00022051	-1.7932	-0.00091322	-2.2262	-0.0011337	509.26994800305783	35.277	0.42271	35.277	35.052	35.475	0					16	8	3	0	0	0	0.027462	1	1762	1762		27.882	0	1	21931	+		12542	21730	10285	10297	13690	13690					0.021491699262014663
FTGQLTEEL	9	Unmodified	_FTGQLTEEL_					0	0	0		ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.3198852539062	2	519.261122	1036.50769	2.1501	0.0011165	1.3139	0.00068228	3.464	0.0017987	519.2616522735187	89.182	1.0049	89.182	88.843	89.848	0					37	24	2	0	0	0	0.027462	1	9479	9479		20.947	9.4359	1	404050			12543	5275	10286	10298	13691	13691					-0.00910259893203147
FTGRRASILGL	11	Unmodified	_FTGRRASILGL_					0	0	0			REV__nc|ENSG00000162004|A2IDD5-5|CCDC78	REV__nc|ENSG00000162004|A2IDD5-5|CCDC78	MULTI-MSMS	OvCa9_classI_Rep4_	4	595.8529663085938	2	595.853847	1189.69314	-2.1329	-0.0012709	1.2727	0.00075837	-0.86016	-0.00051253	595.8544938651914	88.211	1.2045	85.608	85.327	86.532	-2.6027					65	23	4	0	0	0	0.63561	1	7544	7544		41.427	4.9799	1	599470	+		12544	26513	10287	10299	13692	13692					0.10588187416942674
FTGRWALKL	9	Unmodified	_FTGRWALKL_					0	0	0			REV__ENSG00000099901|ENST00000430524|RANBP1	REV__ENSG00000099901|ENST00000430524|RANBP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.3206787109375	2	546.321651	1090.62875	-0.48802	-0.00026662	-0.1921	-0.00010495	-0.68012	-0.00037157	546.3213677654991	102.25	1.8325	100.05	99.676	101.51	-2.1994					77	34	3	0	0	0	0.62352	1	9196	9196		29.15	1.2673	1	124680	+		12545	17339	10288	10300	13693	13693					0.08706032330769631
FTGRWALKL	9	Unmodified	_FTGRWALKL_					0	0	0			REV__ENSG00000099901|ENST00000430524|RANBP1	REV__ENSG00000099901|ENST00000430524|RANBP1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	546.321651	1090.62875	-1.2646	-0.00069087	0.74105	0.00040485	-0.52354	-0.00028602	546.3217943279683	101.57	1.9884	99.965	99.498	101.49	-1.6053	-0.042197	0.00054307	NaN	29.15	74	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127430	+		12546	17339	10288	10300							0.08706032330769631
FTGRWALKL	9	Unmodified	_FTGRWALKL_					0	0	0			REV__ENSG00000099901|ENST00000430524|RANBP1	REV__ENSG00000099901|ENST00000430524|RANBP1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	546.321651	1090.62875	-0.48802	-0.00026662	-0.1921	-0.00010495	-0.68012	-0.00037157	546.3213677654991	102.25	1.8325	100.05	99.676	101.51	-2.1994	0.042197	-0.00047653	NaN	29.15	77	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124680	+		12547	17339	10288	10300							0.08706032330769631
FTGWSDVDL	9	Unmodified	_FTGWSDVDL_					0	0	0		tr|A0A7D6ZZP3|A0A7D6ZZP3_9CLOT2,3-bisphosphoglycerate-dependentphosphoglyceratemutaseOS=ClostridiumintestinaleOX=36845GN=gpmAPE=3SV=1	tr|A0A7D6ZZP3|A0A7D6ZZP3_9CLOT2,3-bisphosphoglycerate-dependentphosphoglyceratemutaseOS=ClostridiumintestinaleOX=36845GN=gpmAPE=3SV=1	tr|A0A7D6ZZP3|A0A7D6ZZP3_9CLOT2,3-bisphosphoglycerate-dependentphosphoglyceratemutaseOS=ClostridiumintestinaleOX=36845GN=gpmAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.7673950195312	2	520.24019	1038.46583	1.6888	0.00087857	1.627	0.0008464	3.3157	0.001725	520.2411664250347	78.542	0.37458	78.542	78.335	78.709	0					11	8	2	0	0	0	0.027462	1	7990	7990		45.952	16.802	1	171620			12548	35970	10289	10301	13694	13694					-0.051868155817146544
FTHHSLGSEV	10	Unmodified	_FTHHSLGSEV_					0	0	0		nc|ENSG00000101773|Q99708-3|RBBP8;ENSG00000101773|ENST00000327155|RBBP8;nc|ENSG00000101773|Q99708-2|RBBP8	nc|ENSG00000101773|Q99708-3|RBBP8	nc|ENSG00000101773|Q99708-3|RBBP8	MULTI-MSMS	OvCa99_classI_Rep5	1	557.773193359375	2	557.269813	1112.52507	1.5046	0.00083849	0.077175	4.3007E-05	1.5818	0.00088149	557.2695128345554	145.7	0.9984	145.7	145.23	146.23	0					35	20	3	0	0	0	0.53885	1	17031	17031		49.442	3.4896	1	199370			12549	2198	10290	10302	13695	13695					-0.026689195675317023
FTHIIFRD	8	Unmodified	_FTHIIFRD_					0	0	0		ENST00000357849.8_1_8:67974401-67974530:-|nuORF	ENST00000357849.8_1_8:67974401-67974530:-|nuORF	ENST00000357849.8_1_8:67974401-67974530:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.7623901367188	2	524.782359	1047.55016	-1.7468	-0.00091671	-2.0876	-0.0010955	-3.8345	-0.0020123	524.7810703542494	62.969	2.3691	60.224	58.897	61.266	-2.7444					66	45	2	0	0	0	0.028476	1	4839	4839		16.473	8.7829	1	144330			12550	10724	10291	10303	13696	13696					0.028291800257193245
FTHLHSMGGTV	11	Unmodified	_FTHLHSMGGTV_					0	0	0			REV__ENSG00000106785|ENST00000341469|TRIM14	REV__ENSG00000106785|ENST00000341469|TRIM14	MULTI-SECPEP	OvCa99_classI_Rep5	1	592.797119140625	2	593.787315	1185.56008	0.92612	0.00054992	-3.6422	-0.0021627	-2.7161	-0.0016128	593.7851728253069	158.34	0.45845	158.34	158.15	158.61	0					11	9	2	0	0	0	0.025806	1	18579	18579		12.812	0	1	30376	+		12551	17825	10292	10304	13697	13697					-0.02528000031202282
FTHLVAPL	8	Unmodified	_FTHLVAPL_					0	0	0			REV__nc|ENSG00000177034|Q5HYI7-2|MTX3	REV__nc|ENSG00000177034|Q5HYI7-2|MTX3	MULTI-SECPEP	OvCa99_classI_Rep5	1	448.9123229980469	2	449.263271	896.511988	0.255	0.00011456	-3.3331	-0.0014974	-3.0781	-0.0013829	449.2610641965593	35.542	0.45942	35.542	35.293	35.753	0					22	9	3	0	0	0	0.028476	1	1801	1801		21.702	18.543	1	64468	+		12552	21981	10293	10305	13698	13698					0.05959294111039526
FTHPVGLL	8	Unmodified	_FTHPVGLL_					0	0	0		HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|56|1|sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|56|1|sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|56|1|sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	442.2724914550781	2	442.255446	882.496338	-0.32432	-0.00014343	1.065	0.00047101	0.74069	0.00032757	442.2557203261794	97.267	1.0539	95.508	95.157	96.211	-1.7595					27	20	2	0	0	0	0.028476	1	6428	6428		57.453	2.688	1	73657			12553	14408	10294	10306	13699	13699					0.050390075940072165
FTHPVGLL	8	Unmodified	_FTHPVGLL_					0	0	0		HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|56|1|sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|56|1|sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|56|1|sense	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	442.255446	882.496338	0.33155	0.00014663	0.55709	0.00024638	0.88864	0.000393	442.25543689213634	97.854	0.90633	95.476	95.166	96.072	-2.3786	-0.015959	-0.0002226	NaN	57.453	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68658			12554	14408	10294	10306							0.050390075940072165
FTIAMGEKG	9	Unmodified	_FTIAMGEKG_					0	0	0			REV__tr|A0A553SGU7|A0A553SGU7_NIACIDEAD-boxATP-dependentRNAhelicaseCshAOS=NialliacirculansOX=1397GN=cshAPE=3SV=1	REV__tr|A0A553SGU7|A0A553SGU7_NIACIDEAD-boxATP-dependentRNAhelicaseCshAOS=NialliacirculansOX=1397GN=cshAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	477.24432373046875	2	477.241678	952.468803	0.55619	0.00026543	0.45093	0.0002152	1.0071	0.00048064	477.2413180800296	161.75	0.35887	161.75	161.56	161.92	0					11	6	2	0	0	0	0.59983	1	18970	18970		31.955	0	1	32414	+		12555	29740	10295	10307	13700	13700					-0.009332637285410783
FTIAMGEKG	9	Unmodified	_FTIAMGEKG_					0	0	0			REV__tr|A0A553SGU7|A0A553SGU7_NIACIDEAD-boxATP-dependentRNAhelicaseCshAOS=NialliacirculansOX=1397GN=cshAPE=3SV=1	REV__tr|A0A553SGU7|A0A553SGU7_NIACIDEAD-boxATP-dependentRNAhelicaseCshAOS=NialliacirculansOX=1397GN=cshAPE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	477.241678	952.468803	0.55619	0.00026543	0.45093	0.0002152	1.0071	0.00048064	477.2413180800296	161.75	0.35887	161.75	161.56	161.92	0	0	0	NaN	31.955	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32414	+		12556	29740	10295	10307							-0.009332637285410783
FTIINPHKL	9	Unmodified	_FTIINPHKL_					0	0	0			REV__ENST00000547020.1_1_12:53880221-53880452:-|nuORF	REV__ENST00000547020.1_1_12:53880221-53880452:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.2666625976562	2	541.821484	1081.62842	-0.79638	-0.0004315	-3.5904	-0.0019453	-4.3868	-0.0023768	541.8195374897855	76.265	1.8145	73.326	72.985	74.799	-2.9389					76	37	3	0	0	0	0.027461	1	6189	6189		25.574	3.6142	1	1666700	+		12557	19622	10296	10308	13701	13701					0.09086612610940392
FTIRLVVGN	9	Unmodified	_FTIRLVVGN_					0	0	0		tr|A0A7D6VMF8|A0A7D6VMF8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13620PE=4SV=1	tr|A0A7D6VMF8|A0A7D6VMF8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13620PE=4SV=1	tr|A0A7D6VMF8|A0A7D6VMF8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13620PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	509.8041076660156	2	509.805834	1017.59712	-1.3099	-0.00066782	-2.9211	-0.0014892	-4.231	-0.002157	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.69403	1	11182	11182		19.997	0.6368	1	99460			12558	34655	10297	10309	13702	13702					0.08902039576844345
FTITQVPIH	9	Unmodified	_FTITQVPIH_					0	0	0		ENSG00000150893|ENST00000280481|FREM2;FREM2|p.E2213Vfs*37|1|0.04|ENSG00000150893|chr13:38851003-38851004|-/TGTTCTTCACGTCAGGAAATTCTGAA|frameshift_variant;nc|ENSG00000150893|Q5SZK8-2|FREM2	ENSG00000150893|ENST00000280481|FREM2	ENSG00000150893|ENST00000280481|FREM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.2771606445312	2	528.297842	1054.58113	-0.69178	-0.00036547	3.753	0.0019827	3.0613	0.0016173	528.3002037790397	41.597	0.21822	41.597	41.462	41.681	0					7	4	2	0	0	0	0.027462	1	2620	2620		16.473	4.2663	1	50209			12559	5522	10298	10310	13703	13703					0.056023333399252806
FTIVYGYNK	9	Unmodified	_FTIVYGYNK_					0	0	0		tr|A0A7D6VXQ6|A0A7D6VXQ6_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09680PE=4SV=1	tr|A0A7D6VXQ6|A0A7D6VXQ6_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09680PE=4SV=1	tr|A0A7D6VXQ6|A0A7D6VXQ6_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09680PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.7701416015625	2	552.78985	1103.56515	2.5038	0.0013841	-0.9715	-0.00053703	1.5323	0.00084705	552.7906317011102	75.843	0.7069	75.843	75.369	76.076	0					36	17	3	0	0	0	0.027462	1	7504	7504		26.693	5.0072	1	991570			12560	35296	10299	10311	13704	13704					0.01750627103047009
FTIVYGYNK	9	Unmodified	_FTIVYGYNK_					0	0	0		tr|A0A7D6VXQ6|A0A7D6VXQ6_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09680PE=4SV=1	tr|A0A7D6VXQ6|A0A7D6VXQ6_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09680PE=4SV=1	tr|A0A7D6VXQ6|A0A7D6VXQ6_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09680PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	552.78985	1103.56515	-0.70736	-0.00039102	1.2219	0.00067543	0.51449	0.00028441	553.292223952982	78.576	0.50327	76.224	75.998	76.501	-2.3527	0.1904	0.001099	NaN	19.997	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31280			12561	35296	10299	10311							0.01750627103047009
FTIYEGIKEG	10	Unmodified	_FTIYEGIKEG_					0	0	0			REV__tr|A0A553STS9|A0A553STS9_NIACIPeptidoglycanbindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05705PE=4SV=1	REV__tr|A0A553STS9|A0A553STS9_NIACIPeptidoglycanbindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05705PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.8051147460938	2	578.797872	1155.58119	-1.185	-0.00068587	3.6702	0.0021243	2.4852	0.0014384	578.8003587785244	49.692	0.52539	49.692	49.462	49.988	0					18	11	2	0	0	0	0.026994	1	3707	3707		19.104	0	1	198230	+		12562	31007	10300	10312	13705	13705					0.009622885492717614
FTKEKELL	8	Unmodified	_FTKEKELL_					0	0	0		tr|A0A553STK9|A0A553STK9_NIACIYhgE/Pipdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05330PE=4SV=1	tr|A0A553STK9|A0A553STK9_NIACIYhgE/Pipdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05330PE=4SV=1	tr|A0A553STK9|A0A553STK9_NIACIYhgE/Pipdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05330PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.3272705078125	2	504.292225	1006.5699	-0.86881	-0.00043813	3.0904	0.0015585	2.2216	0.0011203	504.29399246003067	26.667	0.29998	26.667	26.492	26.792	0					8	5	2	0	0	0	0.028476	1	707	707		31.955	0	1	9808			12563	34501	10301	10313	13706	13706					0.06687511245809219
FTKGTKIRIM	10	Unmodified	_FTKGTKIRIM_					0	0	0		tr|A0A553SNL6|A0A553SNL6_NIACI3'-phosphate/5'-hydroxynucleicacidligaseOS=NialliacirculansOX=1397GN=CEQ21_24700PE=4SV=1	tr|A0A553SNL6|A0A553SNL6_NIACI3'-phosphate/5'-hydroxynucleicacidligaseOS=NialliacirculansOX=1397GN=CEQ21_24700PE=4SV=1	tr|A0A553SNL6|A0A553SNL6_NIACI3'-phosphate/5'-hydroxynucleicacidligaseOS=NialliacirculansOX=1397GN=CEQ21_24700PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8568725585938	2	597.855001	1193.69545	-0.38237	-0.0002286	2.6587	0.0015895	2.2763	0.0013609	597.8564103488146	145.14	4.0194	143.71	141.51	145.53	-1.4357					229	77	4	0	0	0	0.818	1	14090	14090		16.717	0.24424	1	217250			12564	33937	10302	10314	13707	13707					0.10634899830370159
FTKIANPS	8	Unmodified	_FTKIANPS_					0	0	0			REV__tr|A0A7D6VT24|A0A7D6VT24_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_15205PE=4SV=1	REV__tr|A0A7D6VT24|A0A7D6VT24_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_15205PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	439.6888427734375	2	439.242535	876.470518	0.931	0.00040894	-2.1971	-0.00096504	-1.2661	-0.0005561	439.2417155500236	58.634	0.37067	58.634	58.403	58.774	0					14	8	2	0	0	0	0.028476	1	5002	5002		24.203	0	1	586530	+		12565	31567	10303	10315	13708	13708					0.02734113351709766
FTKIVLITN	9	Unmodified	_FTKIVLITN_					0	0	0		tr|A0A7D7A4T4|A0A7D7A4T4_9CLOTAdenosylcobinamidekinaseOS=ClostridiumintestinaleOX=36845GN=cobUPE=3SV=1	tr|A0A7D7A4T4|A0A7D7A4T4_9CLOTAdenosylcobinamidekinaseOS=ClostridiumintestinaleOX=36845GN=cobUPE=3SV=1	tr|A0A7D7A4T4|A0A7D7A4T4_9CLOTAdenosylcobinamidekinaseOS=ClostridiumintestinaleOX=36845GN=cobUPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.7937622070312	2	524.823692	1047.63283	-1.3063	-0.00068559	0.49745	0.00026107	-0.80888	-0.00042452	524.8237123850076	92.205	1.1649	89.662	89.313	90.478	-2.5425					43	22	3	0	0	0	0.027462	1	7970	7970		20.947	0	1	77159			12566	36155	10304	10316	13709	13709					0.11092077033845271
FTKKILSL	8	Unmodified	_FTKKILSL_					0	0	0		ENSG00000205328|ENST00000379665|OR6C65	ENSG00000205328|ENST00000379665|OR6C65	ENSG00000205328|ENST00000379665|OR6C65	MULTI-SECPEP	OvCa99_classI_Rep5	1	476.25323486328125	2	475.307678	948.600803	-0.27864	-0.00013244	-2.6485	-0.0012589	-2.9272	-0.0013913	475.3062623820794	39.129	0.35968	39.129	38.972	39.332	0					13	7	3	0	0	0	0.028476	1	2270	2270		9.7057	0	1	125120			12567	9066	10305	10317	13710	13710					0.1244470935072286
FTKKVGFLL	9	Unmodified	_FTKKVGFLL_					0	0	0		ENST00000430853.5_1_22:28315467-28385927:+|nuORF;ENST00000453632.5_1_22:28315467-28393540:+|nuORF;ENST00000454741.5_1_22:28315467-28390635:+|nuORF	ENST00000430853.5_1_22:28315467-28385927:+|nuORF	ENST00000430853.5_1_22:28315467-28385927:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.2858276367188	2	526.828778	1051.643	-0.18586	-9.7915E-05	-4.1789	-0.0022015	-4.3647	-0.0022995	526.8262486342921	114.96	0.41515	113.56	113.36	113.77	-1.3977					13	7	2	0	0	0	0.027448	1	10667	10667		44.117	6.9577	1	12760			12568	11793	10306	10318	13711	13711					0.11924684759082993
FTKKVISPSI	10	Unmodified	_FTKKVISPSI_					0	0	0		tr|A0A7D7A297|A0A7D7A297_9CLOTCadmiumresistancetransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_15895PE=4SV=1	tr|A0A7D7A297|A0A7D7A297_9CLOTCadmiumresistancetransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_15895PE=4SV=1	tr|A0A7D7A297|A0A7D7A297_9CLOTCadmiumresistancetransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_15895PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	560.3403930664062	2	560.342249	1118.66995	-7.144	-0.0040031	3.6168	0.0020266	-3.5273	-0.0019765	560.3441648343594	161.4	2.0053	160.03	159.58	161.59	-1.3692					105	41	5	0	0	0	0.72319	1	14014	14014		27.882	2.3082	1	475740			12569	36068	10307	10319	13712	13712					0.11535748579603933
FTKKYKLI	8	Unmodified	_FTKKYKLI_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11;DNAH11|p.L1769Yfs*9|1|0.08|ENSG00000105877|chr7:21659007-21659008|-/TATGCAAGAAACGGTGCGTCATT|frameshift_variant	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MULTI-MSMS	OvCa99_classI_Rep5	1	520.8295288085938	2	520.828778	1039.643	0.69798	0.00036353	0.80844	0.00042106	1.5064	0.00078459	520.8291212439383	145.14	0.78697	145.14	144.79	145.58	0					31	14	3	0	0	0	0.68714	1	16972	16972		45.952	8.9235	1	124460			12570	2511	10308	10320	13713	13713					0.12476684759076306
FTKLTLLLM	9	Unmodified	_FTKLTLLLM_					0	0	0		nc|ENSG00000158019|Q9NXR7-4|BABAM2;nc|ENSG00000158019|Q9NXR7-3|BABAM2;ENSG00000158019|ENST00000379624|BABAM2;nc|ENSG00000158019|Q9NXR7-1|BABAM2;SLC30A6-BRE|2|fusion;SLC30A6-BRE|3|fusion;SLC30A6-BRE|5|fusion;SLC30A6-BRE|6|fusion;SLC30A6-BRE|1|fusion;SLC30A6-BRE|4|fusion	nc|ENSG00000158019|Q9NXR7-4|BABAM2	nc|ENSG00000158019|Q9NXR7-4|BABAM2	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3302001953125	2	540.330296	1078.64604	-1.2676	-0.00068491	0.91404	0.00049388	-0.35354	-0.00019103	540.3307152267141	139.22	4.0818	138.16	137	141.08	-1.0595					200	82	3	0	0	0	0.68424	1	11468	11468		21.96	0	1	55828			12571	5924	10309	10321	13714	13714					0.1098619182157563
FTKLYRWIL	9	Unmodified	_FTKLYRWIL_					0	0	0			REV__ENST00000205402.9_1_7:107556023-107556089:+|nuORF	REV__ENST00000205402.9_1_7:107556023-107556089:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	621.3323364257812	2	620.366059	1238.71756	2.1164	0.001313	2.426	0.001505	4.5424	0.002818	620.3667286927672	115.78	0.4236	115.78	115.39	115.82	0					10	8	2	0	0	0	0.027411	1	13201	13201		54.776	12.38	1	23963	+		12572	23703	10310	10322	13715	13715					0.10775447570449614
FTKNPQLIL	9	Unmodified	_FTKNPQLIL_					0	0	0			REV__nc|ENSG00000127412|Q9NQA5-2|TRPV5	REV__nc|ENSG00000127412|Q9NQA5-2|TRPV5	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.7943725585938	2	537.321317	1072.62808	-0.056863	-3.0554E-05	-2.9397	-0.0015796	-2.9966	-0.0016101	537.319520555931	42.848	0.19727	40.139	40.065	40.262	-2.7097					5	3	2	0	0	0	0.027462	1	2334	2334		21.96	0	1	8191.9	+		12573	18814	10311	10323	13716	13716					0.09467192891088416
FTKRLLHIAEI	11	Unmodified	_FTKRLLHIAEI_					0	0	0			REV__ENST00000464749.5_1_9:116152961-116155786:-|nuORF	REV__ENST00000464749.5_1_9:116152961-116155786:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	448.2558288574219	3	447.606478	1339.79761	-0.42194	-0.00018886	-3.341	-0.0014954	-3.7629	-0.0016843	447.60490342670033	75.747	1.5724	73.363	72.658	74.23	-2.384					70	28	4	0	0	0	0.026079	1	3848	3848		31.634	1.0654	1	92231	+		12574	20094	10312	10324	13717	13717					0.1412988917365965
FTKRLLHIAEI	11	Unmodified	_FTKRLLHIAEI_					0	0	0			REV__ENST00000464749.5_1_9:116152961-116155786:-|nuORF	REV__ENST00000464749.5_1_9:116152961-116155786:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	447.606478	1339.79761	0.20916	9.3621E-05	-3.7856	-0.0016944	-3.5764	-0.0016008	447.60463010471136	76.185	1.0871	73.246	72.985	74.072	-2.9389	-0.058559	-0.00053216	NaN	31.634	37	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104630	+		12575	20094	10312	10324							0.1412988917365965
FTKRLLLN	8	Unmodified	_FTKRLLLN_					0	0	0			REV__ENST00000558509.5_1_15:78453927-78455839:+|nuORF	REV__ENST00000558509.5_1_15:78453927-78455839:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.8142395019531	2	502.816202	1003.61785	-4.7582	-0.0023925	0.34644	0.0001742	-4.4117	-0.0022183	502.8162748013114	154.42	1.5526	152.97	152.64	154.2	-1.4516					113	39	4	0	0	0	0.7549	1	15354	15354		24.203	4.8428	1	1254800	+		12576	21189	10313	10325	13718	13718					0.11618629956524273
FTKTSQSIR	9	Unmodified	_FTKTSQSIR_					0	0	0			REV__ENSG00000145555|ENST00000513610|MYO10	REV__ENSG00000145555|ENST00000513610|MYO10	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.7769775390625	2	534.29583	1066.57711	-1.5162	-0.00081009	2.4961	0.0013337	0.97997	0.0005236	534.2964909140699	75.593	0.93217	73.739	73.429	74.361	-1.854					24	17	3	0	0	0	0.02744	1	6255	6255		29.17	7.2102	1	26130	+		12577	19968	10314	10326	13719	13719					0.04648243846213518
FTKVFFQCI	9	Unmodified	_FTKVFFQCI_					0	0	0			REV__ENST00000261798.9_1_5:148876006-148876138:-|nuORF	REV__ENST00000261798.9_1_5:148876006-148876138:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.34033203125	2	566.79662	1131.57869	3.9152	0.0022191	-0.71205	-0.00040359	3.2032	0.0018155	566.7968925690899	88.219	0.67508	88.219	87.962	88.637	0					24	15	2	0	0	0	0.027462	1	9419	9419		26.693	11.051	1	1345000	+		12578	23959	10315	10327	13720	13720					0.018161616106226575
FTKYLVIL	8	Unmodified	_FTKYLVIL_					0	0	0		tr|A0A7D6ZNF1|A0A7D6ZNF1_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16240PE=3SV=1	tr|A0A7D6ZNF1|A0A7D6ZNF1_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16240PE=3SV=1	tr|A0A7D6ZNF1|A0A7D6ZNF1_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16240PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.7894592285156	2	498.810054	995.605554	-0.79218	-0.00039515	-1.4113	-0.00070399	-2.2035	-0.0010991	498.8095147777359	116.06	0.59183	115.02	114.85	115.44	-1.0414					15	11	2	0	0	0	0.028476	1	8650	8650		88.643	11.796	1	11561			12579	35677	10316	10328	13721	13721					0.10757593493462991
FTLALAYGAV	10	Unmodified	_FTLALAYGAV_					0	0	0		ENSG00000164128|ENST00000296533|NPY1R	ENSG00000164128|ENST00000296533|NPY1R	ENSG00000164128|ENST00000296533|NPY1R	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.2724609375	2	513.286943	1024.55933	-1.0002	-0.00051337	-1.0494	-0.00053865	-2.0496	-0.001052	513.2864114335335	103.49	1.438	103.49	103.3	104.74	0					42	33	2	0	0	0	0.026871	1	11713	11713		29.15	0	1	1284300			12580	6418	10317	10329	13722	13722					0.048035285913556436
FTLENETP	8	Unmodified	_FTLENETP_					0	0	0			REV__ENSG00000061676|ENST00000361354|NCKAP1	REV__ENSG00000061676|ENST00000361354|NCKAP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.77813720703125	2	475.726915	949.439277	2.0778	0.00098845	4.2555	0.0020245	6.3333	0.0030129	475.7285134136385	117.61	0.42464	117.61	117.41	117.84	0					13	8	3	0	0	0	0.028476	1	13463	13463		12.207	0	1	45377	+		12581	16745	10318	10330	13723	13723					-0.03746504473042478
FTLGNVVGMY	10	Unmodified	_FTLGNVVGMY_					0	0	0		ENST00000515197.2_1_7:135347327-135357590:+|nuORF;ENSG00000243317|ENST00000507606|STMP1	ENST00000515197.2_1_7:135347327-135357590:+|nuORF	ENST00000515197.2_1_7:135347327-135357590:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	550.777587890625	2	550.775885	1099.53722	0.80696	0.00044445	1.4688	0.000809	2.2758	0.0012535	550.7766079098886	142.56	1.2283	142.56	142.29	143.51	0					46	24	3	0	0	0	0.068739	2	16664	16643;16664		122.18	56.373	1	1016300			12582	9375	10319	10331	13724;13725	13725					-0.00857019148679683
FTLGRADEL	9	Unmodified	_FTLGRADEL_					0	0	0		ENSG00000153015|ENST00000381070|CWC27;nc|ENSG00000153015|Q6UX04-2|CWC27	ENSG00000153015|ENST00000381070|CWC27	ENSG00000153015|ENST00000381070|CWC27	MULTI-MSMS	OvCa9_classI_Rep3	3	511.2696228027344	2	511.269281	1020.52401	-0.36419	-0.0001862	0.24046	0.00012294	-0.12373	-6.3259E-05	511.2692779558357	88.613	1.1744	86.482	86.163	87.337	-2.1309					56	23	3	0	0	0	0.38969	1	5396	5396		52.937	0.63753	1	526560			12583	5655	10320	10332	13726	13726					0.014568660635518427
FTLGSRVQY	9	Unmodified	_FTLGSRVQY_					0	0	0			REV__nc|ENSG00000197121|Q75T13-3|PGAP1	REV__nc|ENSG00000197121|Q75T13-3|PGAP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.2584228515625	2	535.785099	1069.55564	-2.2992	-0.0012319	3.0256	0.0016211	0.72639	0.00038919	535.7851580341693	85.48	0.29623	83.99	83.9	84.196	-1.4906					7	5	2	0	0	0	0.027462	1	7416	7416		31.53	3.6476	1	11865	+		12584	22892	10321	10333	13727	13727					0.023648588175319674
FTLIFFCC	8	Unmodified	_FTLIFFCC_					0	0	0		ENST00000585609.1_1_19:11363156-11363255:-|nuORF	ENST00000585609.1_1_19:11363156-11363255:-|nuORF	ENST00000585609.1_1_19:11363156-11363255:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.26934814453125	2	497.232267	992.449982	-0.22507	-0.00011191	2.7103	0.0013477	2.4853	0.0012357	497.2335314671959	33.174	0.54279	33.174	32.941	33.483	0					20	10	2	0	0	0	0.028476	1	1523	1523		21.702	3.3779	1	149380			12585	14038	10322	10334	13728	13728					-0.04654516623975269
FTLLSPVPYVN	11	Unmodified	_FTLLSPVPYVN_					0	0	0			REV__nc|ENSG00000040199|Q6ZVD8-2|PHLPP2	REV__nc|ENSG00000040199|Q6ZVD8-2|PHLPP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	625.2810668945312	2	625.344989	1248.67542	0.41647	0.00026044	-2.9602	-0.0018512	-2.5438	-0.0015907	625.3430911934253	74.114	0.72755	74.114	73.907	74.635	0					35	18	3	0	0	0	0.02539	1	7340	7340		51.193	5.2204	1	1531800	+		12586	16626	10323	10335	13729	13729					0.0610342737143128
FTLLSWFD	8	Unmodified	_FTLLSWFD_					0	0	0			REV__nc|ENSG00000291153|Q8TBR4|STAG3L4	REV__nc|ENSG00000291153|Q8TBR4|STAG3L4	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.7680053710938	2	514.758018	1027.50148	0.80517	0.00041447	1.2659	0.00065161	2.071	0.0010661	514.7598355003913	142.58	0.54892	142.58	142.23	142.78	0					21	10	3	0	0	0	0.028476	1	16668	16668		26.796	12.659	1	26159	+		12587	25549	10324	10336	13730	13730					-0.01116733334060882
FTLLYVGFF	9	Unmodified	_FTLLYVGFF_					0	0	0			REV__tr|A0A7D6VSN8|A0A7D6VSN8_9CLOTABC3transporterpermeaseproteindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13645PE=4SV=1	REV__tr|A0A7D6VSN8|A0A7D6VSN8_9CLOTABC3transporterpermeaseproteindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13645PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	553.7982788085938	2	553.799686	1105.58482	1.4774	0.00081816	1.3267	0.0007347	2.804	0.0015529	553.8001699579819	60.115	0.95551	57.016	56.42	57.375	-3.0993					45	29	2	0	0	0	0.6959	1	1994	1994		19.36	1.0356	1	9577.7	+		12588	31525	10325	10337	13731	13731					0.0362500311380245
FTLNRRRR	8	Unmodified	_FTLNRRRR_					0	0	0			REV__nc|ENSG00000164877|Q8IY33-2|MICALL2	REV__nc|ENSG00000164877|Q8IY33-2|MICALL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.7682495117188	2	559.836323	1117.65809	0.60773	0.00034023	1.3838	0.00077468	1.9915	0.0011149	559.8371048470779	63.652	0.55737	63.652	63.337	63.894	0					29	13	3	0	0	0	0.028476	1	5718	5718		29.15	5.6269	1	477260	+		12589	28974	10326	10338	13732	13732					0.10396989399646372
FTLPSFISTI	10	Unmodified	_FTLPSFISTI_					0	0	0			REV__tr|A0A553SMG6|A0A553SMG6_NIACIMagnesiumtransportproteinCorAOS=NialliacirculansOX=1397GN=corAPE=3SV=1	REV__tr|A0A553SMG6|A0A553SMG6_NIACIMagnesiumtransportproteinCorAOS=NialliacirculansOX=1397GN=corAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	564.308837890625	2	563.313158	1124.61176	-0.14534	-8.1871E-05	-3.1781	-0.0017903	-3.3235	-0.0018721	563.3112910431878	121.99	1.1381	121.77	121.28	122.41	-0.21803					44	22	3	0	0	0	0.027056	1	11742	11742		9.7057	0	1	132820	+		12590	30328	10327	10339	13733	13733					0.054440669343193804
FTLRRIGH	8	Unmodified	_FTLRRIGH_					0	0	0			REV__nc|ENSG00000278540|Q13085-3|ACACA	REV__nc|ENSG00000278540|Q13085-3|ACACA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.7198486328125	2	500.295968	998.577383	-1.4303	-0.00071557	-1.9348	-0.00096795	-3.365	-0.0016835	500.2949138674659	44.829	0.82229	41.79	41.564	42.386	-3.0385					28	15	3	0	0	0	0.028476	1	2313	2313		31.955	16.313	1	59740	+		12591	23642	10328	10340	13734	13734					0.07803708356755124
FTLRRIGH	8	Unmodified	_FTLRRIGH_					0	0	0			REV__nc|ENSG00000278540|Q13085-3|ACACA	REV__nc|ENSG00000278540|Q13085-3|ACACA	MULTI-MATCH	OvCa9_classI_Rep2	2		2	500.295968	998.577383	-0.25735	-0.00012875	-1.5766	-0.00078877	-1.834	-0.00091752	500.2950024289124	44.679	0.79533	41.969	41.702	42.497	-2.7097	0.089393	0.00018671	NaN	31.955	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20562	+		12592	23642	10328	10340							0.07803708356755124
FTLTGEQATK	10	Unmodified	_FTLTGEQATK_					0	0	0			REV__ENST00000555355.5_2_14:24910051-24910111:-|nuORF	REV__ENST00000555355.5_2_14:24910051-24910111:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.9677124023438	2	548.287671	1094.56079	-0.076846	-4.2134E-05	-1.6825	-0.00092249	-1.7593	-0.00096463	548.2867266276456	31.587	0.39686	31.587	31.361	31.757	0					16	7	3	0	0	0	0.026891	1	1331	1331		39.253	0	1	110470	+		12593	27541	10329	10341	13735	13735					0.017291178894765835
FTLTMKEFN	9	Unmodified	_FTLTMKEFN_					0	0	0		tr|A0A7D7A343|A0A7D7A343_9CLOTPolysaccharidedeacetylasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20520PE=3SV=1	tr|A0A7D7A343|A0A7D7A343_9CLOTPolysaccharidedeacetylasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20520PE=3SV=1	tr|A0A7D7A343|A0A7D7A343_9CLOTPolysaccharidedeacetylasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20520PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.7896728515625	2	565.781167	1129.54778	0.69275	0.00039194	3.9829	0.0022535	4.6757	0.0026454	565.7828230443217	52.067	0.25171	48.865	48.748	49	-3.2021					6	4	2	0	0	0	0.027462	1	3099	3099		27.882	0	1	8723.6			12594	36103	10330	10342	13736	13736					-0.011810364942675733
FTLTYLLLT	9	Unmodified	_FTLTYLLLT_					0	0	0		tr|A0A7D7AGJ1|A0A7D7AGJ1_9CLOTD-alanyl-D-alaninecarboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08905PE=3SV=1	tr|A0A7D7AGJ1|A0A7D7AGJ1_9CLOTD-alanyl-D-alaninecarboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08905PE=3SV=1	tr|A0A7D7AGJ1|A0A7D7AGJ1_9CLOTD-alanyl-D-alaninecarboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08905PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.2666625976562	2	542.818076	1083.6216	-0.97563	-0.00052959	0.6563	0.00035625	-0.31933	-0.00017334	542.8181864856102	77.232	0.63115	74.416	74.194	74.825	-2.8165					21	12	2	0	0	0	0.027462	1	6189	6189		27.882	4.8398	1	60124			12595	36265	10331	10343	13737	13737					0.08313254939730541
FTLTYLLLT	9	Unmodified	_FTLTYLLLT_					0	0	0		tr|A0A7D7AGJ1|A0A7D7AGJ1_9CLOTD-alanyl-D-alaninecarboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08905PE=3SV=1	tr|A0A7D7AGJ1|A0A7D7AGJ1_9CLOTD-alanyl-D-alaninecarboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08905PE=3SV=1	tr|A0A7D7AGJ1|A0A7D7AGJ1_9CLOTD-alanyl-D-alaninecarboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08905PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.818076	1083.6216	-1.1351	-0.00061618	0.59067	0.00032062	-0.54448	-0.00029555	542.8182496427078	76.117	0.68536	74.263	73.938	74.624	-1.854	-0.029938	0.00036662	NaN	27.882	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37025			12596	36265	10331	10343							0.08313254939730541
FTLTYLLLT	9	Unmodified	_FTLTYLLLT_					0	0	0		tr|A0A7D7AGJ1|A0A7D7AGJ1_9CLOTD-alanyl-D-alaninecarboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08905PE=3SV=1	tr|A0A7D7AGJ1|A0A7D7AGJ1_9CLOTD-alanyl-D-alaninecarboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08905PE=3SV=1	tr|A0A7D7AGJ1|A0A7D7AGJ1_9CLOTD-alanyl-D-alaninecarboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08905PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	542.818076	1083.6216	-0.55234	-0.00029982	-0.23877	-0.00012961	-0.79111	-0.00042943	542.8179073887788	76.572	1.0461	74.2	73.721	74.767	-2.3715	-0.092666	-0.00053385	NaN	27.882	34	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43190			12597	36265	10331	10343							0.08313254939730541
FTLVPSLIKS	10	Unmodified	_FTLVPSLIKS_					0	0	0			REV__MRGPRX3|p.M102L|1|0.23|ENSG00000179826|chr11:18137506-18137506|A/C|missense_variant	REV__MRGPRX3|p.M102L|1|0.23|ENSG00000179826|chr11:18137506-18137506|A/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.7701416015625	2	552.8368	1103.65905	2.5356	0.0014018	2.2539	0.001246	4.7896	0.0026478	552.838614518517	75.584	0.35668	75.584	75.407	75.764	0					12	8	3	0	0	0	0.02717	1	7534	7534		23.523	0.94304	1	367300	+		12598	28679	10332	10344	13738	13738					0.11136346205330483
FTMASAELD	9	Unmodified	_FTMASAELD_					0	0	0		ENST00000468117.1_1_1:45120771-45140129:-|nuORF;ENST00000495630.1_1_1:45102061-45140129:-|nuORF;ENST00000476724.1_1_1:45120771-45140087:-|nuORF	ENST00000468117.1_1_1:45120771-45140129:-|nuORF	ENST00000468117.1_1_1:45120771-45140129:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.77484130859375	2	492.720775	983.426998	-0.71694	-0.00035325	4.297	0.0021172	3.58	0.001764	492.7226872667092	33.764	0.33787	33.764	33.583	33.921	0					11	6	2	0	0	0	0.027462	1	1588	1588		31.955	18.18	1	46049			12599	12321	10333	10345	13739	13739					-0.06537864207734856
FTMEAGNYWF	10	Unmodified	_FTMEAGNYWF_					0	0	0		nc|ENSG00000163817|Q9NP91-2|SLC6A20;ENSG00000163817|ENST00000358525|SLC6A20	nc|ENSG00000163817|Q9NP91-2|SLC6A20	nc|ENSG00000163817|Q9NP91-2|SLC6A20	MULTI-SECPEP	OvCa9_classI_Rep4_	4	423.2467041015625	3	422.514708	1264.5223	-1.7862	-0.00075468	-1.9819	-0.0008374	-3.7681	-0.0015921	422.51378528497355	50.235	1.3389	47.094	46.715	48.054	-3.1416					67	25	4	0	0	0	0.027033	1	2854	2854		15.333	0	1	335320			12600	6365	10334	10346	13740	13740					-0.09938511016707707
FTMNNLLPNA	10	Unmodified	_FTMNNLLPNA_					0	0	0		nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2;nc|ENSG00000007202|Q14667-3|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.8070068359375	2	567.784241	1133.55393	0.46845	0.00026598	1.7194	0.00097627	2.1879	0.0012423	567.7868371330496	69.401	0.49919	66.587	66.412	66.911	-2.8144					14	9	2	0	0	0	0.026956	1	3096	3096		34.173	0	1	19337			12601	896	10335	10347	13741	13741					-0.0075051826272556355
FTMTVPFRG	9	Unmodified	_FTMTVPFRG_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3172607421875	2	528.27077	1054.52699	0.12826	6.7757E-05	1.7772	0.00093882	1.9054	0.0010066	528.2717586518351	66.764	0.61034	66.764	66.328	66.939	0					31	14	3	0	0	0	0.027462	1	6166	6166		20.947	0	1	630150			12602	5793;36288	10336	10348	13742	13742					0.0019041791672407271
FTNDKIINL	9	Unmodified	_FTNDKIINL_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1;NFE2L1|p.L707Tfs*5|1|0.59|ENSG00000082641|chr17:48059439-48059440|-/GA|frameshift_variant;NFE2L1|p.I623N|1|0.22|ENSG00000082641|chr17:48059190-48059190|T/A|missense_variant	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-MSMS	OvCa9_classI_Rep2	2	539.30078125	2	539.300581	1076.58661	-0.56091	-0.0003025	0.52285	0.00028197	-0.038069	-2.053E-05	539.3007001572946	96.135	2.8085	95.107	94.813	97.622	-1.0281					133	56	4	0	0	0	0.033166	3	8658	8658;8664;8670		132.76	25.75	1	531600			12603	1683	10337	10349	13743;13744;13745	13743					0.05138012131760661
FTNDKIINL	9	Unmodified	_FTNDKIINL_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1;NFE2L1|p.L707Tfs*5|1|0.59|ENSG00000082641|chr17:48059439-48059440|-/GA|frameshift_variant;NFE2L1|p.I623N|1|0.22|ENSG00000082641|chr17:48059190-48059190|T/A|missense_variant	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-MSMS	OvCa9_classI_Rep3	3	539.3011474609375	2	539.300581	1076.58661	0.16369	8.8279E-05	0.0023222	1.2524E-06	0.16601	8.9531E-05	539.3003511647123	97.002	2.402	95.174	94.827	97.229	-1.8286					127	46	4	0	0	0	0.033166	2	6403	6403;6421		132.76	19.346	1	768590			12604	1683	10337	10349	13746;13747	13746					0.05138012131760661
FTNDKIINL	9	Unmodified	_FTNDKIINL_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1;NFE2L1|p.L707Tfs*5|1|0.59|ENSG00000082641|chr17:48059439-48059440|-/GA|frameshift_variant;NFE2L1|p.I623N|1|0.22|ENSG00000082641|chr17:48059190-48059190|T/A|missense_variant	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-MSMS	OvCa9_classI_Rep4_	4	539.30078125	2	539.300581	1076.58661	-0.10375	-5.5952E-05	0.2387	0.00012873	0.13495	7.2778E-05	539.3005377468081	97.516	2.1415	95.138	94.808	96.95	-2.3786					102	41	4	0	0	0	0.027568	2	8649	8637;8649		138.06	25.651	1	701010			12605	1683	10337	10349	13748;13749	13749					0.05138012131760661
FTNEGRAL	8	Unmodified	_FTNEGRAL_					0	0	0		ENSG00000170876|ENST00000306077|TMEM43	ENSG00000170876|ENST00000306077|TMEM43	ENSG00000170876|ENST00000306077|TMEM43	MULTI-MSMS	OvCa99_classI_Rep5	1	454.2366027832031	2	454.235242	906.45593	-0.49581	-0.00022522	0.49002	0.00022259	-0.0057903	-2.6302E-06	454.2353780221426	50.487	0.61843	50.487	50.245	50.863	0					23	13	2	0	0	0	0.60899	1	3833	3833		62.107	9.8082	1	1894700			12606	7146	10338	10350	13750	13750					-0.0010395879644420347
FTNETDIFI	9	Unmodified	_FTNETDIFI_					0	0	0			REV__ENSG00000100206|ENST00000216024|DMC1	REV__ENSG00000100206|ENST00000216024|DMC1	MULTI-MSMS	OvCa9_classI_Rep3	3	550.2681274414062	2	550.268947	1098.52334	-1.2272	-0.00067531	1.3953	0.0007678	0.16808	9.2492E-05	550.2695144418313	135.02	0.6897	133.9	133.7	134.39	-1.1226					27	13	3	0	0	0	0.33652	1	10907	10907		58.782	0	1	47141	+		12607	17378	10339	10351	13751	13751					-0.0219797337615546
FTNLAPPEKLL	11	Unmodified	_FTNLAPPEKLL_					0	0	0			REV__ENST00000435880.6_1_2:70190299-70191494:-|nuORF	REV__ENST00000435880.6_1_2:70190299-70191494:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	621.857177734375	2	621.858264	1241.70197	0.33879	0.00021068	-3.7143	-0.0023097	-3.3755	-0.0020991	621.8557696174132	77.976	1.9407	75.623	75.304	77.244	-2.3527					133	38	5	0	0	0	0.20362	1	4119	4119		44.377	0	1	810810	+		12608	25776	10340	10352	13752	13752					0.09079116262751086
FTNTSTIFQHP	11	Unmodified	_FTNTSTIFQHP_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	OvCa9_classI_Rep3	3	431.5670166015625	3	431.547177	1291.6197	0.59595	0.00025718	4.1254	0.0017803	4.7214	0.0020375	431.8829655500563	72.645	0.1489	70.043	69.919	70.068	-2.6023					4	2	2	0	0	0	0.025759	1	3480	3480		19.627	0	1	13309	+		12609	22219	10341	10353	13753	13753					-0.014444058162098372
FTPHAPAPR	9	Unmodified	_FTPHAPAPR_					0	0	0			REV__ENST00000467086.5_1_17:79817777-79817945:-|nuORF	REV__ENST00000467086.5_1_17:79817777-79817945:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	497.2710876464844	2	497.266876	992.519199	-0.32122	-0.00015973	3.7546	0.001867	3.4334	0.0017073	497.2684732356221	52.524	2.2183	52.524	51.953	54.172	0					131	51	3	0	0	0	0.53483	1	4164	4164		39.253	6.4404	1	1537400	+		12610	26195	10342	10354	13754	13754					0.022640267114638846
FTPKNKGRL	9	Unmodified	_FTPKNKGRL_					0	0	0			REV__tr|A0A7D6VZV2|A0A7D6VZV2_9CLOTLargeribosomalsubunitproteinuL13OS=ClostridiumintestinaleOX=36845GN=rplMPE=3SV=1	REV__tr|A0A7D6VZV2|A0A7D6VZV2_9CLOTLargeribosomalsubunitproteinuL13OS=ClostridiumintestinaleOX=36845GN=rplMPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	530.8172607421875	2	530.816733	1059.61891	0.30148	0.00016003	-0.49755	-0.00026411	-0.19606	-0.00010407	530.816354509631	72.1	2.7704	69.497	69.18	71.951	-2.6023					121	55	4	0	0	0	0.56889	1	3415	3415		35.618	0	1	935120	+		12611	31847	10343	10355	13755	13755					0.091488443254093
FTPLLCSPSRP	11	Unmodified	_FTPLLCSPSRP_					0	0	0			REV__ENST00000530493.1_1_11:130011287-130011380:+|nuORF	REV__ENST00000530493.1_1_11:130011287-130011380:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	608.7996826171875	2	609.320991	1216.62743	2.1328	0.0012996	-3.1129	-0.0018968	-0.9801	-0.00059719	609.8211128572661	91.974	0.63201	91.974	91.753	92.385	0					28	14	3	0	0	0	0.025418	1	9943	9943		40.058	10.217	1	331910	+		12612	27204	10344	10356	13756	13756					0.02778030179729285
FTPLLFRIT	9	Unmodified	_FTPLLFRIT_					0	0	0		ENST00000519685.5_1_8:22874978-22875368:+|nuORF	ENST00000519685.5_1_8:22874978-22875368:+|nuORF	ENST00000519685.5_1_8:22874978-22875368:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.3307495117188	2	554.331685	1106.64882	-0.56922	-0.00031554	-3.1545	-0.0017486	-3.7237	-0.0020642	554.3298167815502	92.44	1.411	89.897	89.517	90.928	-2.5425					70	27	4	0	0	0	0.42676	1	8031	8031		49.442	12.282	1	479050			12613	13090	10345	10357	13757	13757					0.09975783270760985
FTPLSNSIF	9	Unmodified	_FTPLSNSIF_					0	0	0			REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	513.2724609375	2	513.26875	1024.52295	-1.8585	-0.00095389	2.2966	0.0011788	0.43817	0.0002249	513.2706478083321	104.38	0.84772	104.38	103.85	104.7	0					43	19	4	0	0	0	0.51865	1	11713	11713		40.778	5.1599	1	1235100	+		12614	16826	10346	10358	13758	13758					0.011666516946434058
FTPLSNSIF	9	Unmodified	_FTPLSNSIF_					0	0	0			REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	513.26875	1024.52295	-1.8585	-0.00095389	2.2966	0.0011788	0.43817	0.0002249	513.2706478083321	104.38	0.84772	104.38	103.85	104.7	0	-0.17881	2.3504E-05	NaN	40.778	43	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1235100	+		12615	16826	10346	10358							0.011666516946434058
FTPLSNSIF	9	Unmodified	_FTPLSNSIF_					0	0	0			REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	513.26875	1024.52295	-0.37184	-0.00019085	2.134	0.0010953	1.7622	0.00090447	513.2700339842993	105.1	1.0403	104.67	104.36	105.4	-0.43642	0.10922	-0.00014343	NaN	40.778	32	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50833	+		12616	16826	10346	10358							0.011666516946434058
FTPLSNSIF	9	Unmodified	_FTPLSNSIF_					0	0	0			REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	513.26875	1024.52295	0.68878	0.00035353	2.6986	0.0013851	3.3873	0.0017386	513.2695264169378	105.98	1.0434	104.63	104.35	105.4	-1.3482	0.069588	0.0004361	NaN	40.778	34	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46948	+		12617	16826	10346	10358							0.011666516946434058
FTPLVVRTL	9	Unmodified	_FTPLVVRTL_					0	0	0			REV__ENSG00000144909|ENST00000296220|OSBPL11	REV__ENSG00000144909|ENST00000296220|OSBPL11	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3234252929688	2	523.32386	1044.63317	-0.37111	-0.00019421	0.11957	6.2576E-05	-0.25153	-0.00013163	523.3237349076933	132.36	1.5282	131.23	130.94	132.47	-1.1249					65	30	3	0	0	0	0.52629	1	10595	10595		40.058	0.80534	1	96476	+		12618	19944	10347	10359	13759	13759					0.11263496753713298
FTPPEKLLH	9	Unmodified	_FTPPEKLLH_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa99_classI_Rep5	1	541.3028564453125	2	541.305667	1080.59678	-0.28107	-0.00015215	-3.4085	-0.001845	-3.6896	-0.0019972	541.3037343255521	23.466	0.30026	23.466	23.297	23.597	0					12	5	3	0	0	0	0.40667	1	333	333		51.335	1.7994	1	59371	+		12619	28942;32737	10348	10360	13760	13760					0.059706198569983826
FTPQYKDL	8	Unmodified	_FTPQYKDL_					0	0	0		tr|A0A7D6VPJ2|A0A7D6VPJ2_9CLOTGlutathioneperoxidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23250PE=3SV=1	tr|A0A7D6VPJ2|A0A7D6VPJ2_9CLOTGlutathioneperoxidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23250PE=3SV=1	tr|A0A7D6VPJ2|A0A7D6VPJ2_9CLOTGlutathioneperoxidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23250PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.77044677734375	2	506.260925	1010.5073	0.46157	0.00023367	-1.9751	-0.00099994	-1.5136	-0.00076626	506.25979726961407	81.271	0.42024	81.271	80.993	81.413	0					18	9	3	0	0	0	0.028476	1	8371	8371		71.877	0	1	737340			12620	34773	10349	10361	13761	13761					0.0024636517761109644
FTPVVLLLG	9	Unmodified	_FTPVVLLLG_					0	0	0		tr|A0A553SH54|A0A553SH54_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_12170PE=3SV=1	tr|A0A553SH54|A0A553SH54_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_12170PE=3SV=1	tr|A0A553SH54|A0A553SH54_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_12170PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.8028259277344	2	479.802229	957.589904	-1.3034	-0.0006254	0.96991	0.00046536	-0.33354	-0.00016003	479.8025967080355	124.87	1.0308	123.48	123.23	124.26	-1.3908					45	19	3	0	0	0	0.47884	1	11860	11860		44.531	5.7249	1	110960			12621	33239	10350	10362	13762	13762					0.10941306976440046
FTQDKALR	8	Unmodified	_FTQDKALR_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5;PEX5|p.D85Efs*2|1|0.22|ENSG00000139197|chr12:7191296-7191297|-/G|frameshift_variant;ENST00000535486.2_1_12:7342729-7343282:+|nuORF	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.2986755371094	2	489.771991	977.529429	-0.29643	-0.00014518	3.1447	0.0015402	2.8483	0.001395	489.7720862288617	43.152	0.29837	43.152	43.014	43.312	0					10	6	2	0	0	0	0.028476	1	2838	2838		31.955	0	1	66576			12622	4755	10351	10363	13763	13763					0.039765896460380645
FTQFKRLK	8	Unmodified	_FTQFKRLK_					0	0	0		nc|ENSG00000102900|Q8N1F7-2|NUP93;ENSG00000102900|ENST00000308159|NUP93;ENST00000564278.1_1_16:56873384-56878518:+|nuORF	nc|ENSG00000102900|Q8N1F7-2|NUP93	nc|ENSG00000102900|Q8N1F7-2|NUP93	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.3244018554688	2	534.321651	1066.62875	-0.22794	-0.00012179	-3.6917	-0.0019726	-3.9197	-0.0020944	534.3196659502541	40.86	0.88607	40.86	40.619	41.505	0					46	19	3	0	0	0	0.028476	1	2542	2542		37.159	10.363	1	1004600			12623	2265	10352	10364	13764	13764					0.09810032330778995
FTQPTIDRRQ	10	Unmodified	_FTQPTIDRRQ_					0	0	0			REV__nc|ENSG00000099954|Q9BXF3|CECR2	REV__nc|ENSG00000099954|Q9BXF3|CECR2	MULTI-MSMS	OvCa9_classI_Rep2	2	631.3358154296875	2	631.336018	1260.65748	-0.24957	-0.00015756	0.88122	0.00055635	0.63166	0.00039879	631.3365935308134	66.385	1.4888	63.689	63.418	64.907	-2.6958					83	29	4	0	0	0	0.54579	1	5137	5137		44.377	30.24	1	672470	+		12624	17343	10353	10365	13765	13765					0.0375810516927686
FTQQWPKRPRS	11	Unmodified	_FTQQWPKRPRS_					0	0	0			REV__ENSG00000175893|ENST00000380916|ZDHHC21	REV__ENSG00000175893|ENST00000380916|ZDHHC21	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.7771911621094	3	477.593232	1429.75787	0.017248	8.2377E-06	-3.6147	-0.0017264	-3.5975	-0.0017181	477.5914149329692	44.432	1.5945	41.723	41.353	42.947	-2.7097					72	31	4	0	0	0	0.026232	1	2484	2484		11.455	0	1	146010	+		12625	21920	10354	10366	13766	13766					0.060177622229275585
FTRGQGAT	8	Unmodified	_FTRGQGAT_					0	0	0		tr|A0A553SKL8|A0A553SKL8_NIACIGlycine--tRNAligasebetasubunitOS=NialliacirculansOX=1397GN=glySPE=3SV=1	tr|A0A553SKL8|A0A553SKL8_NIACIGlycine--tRNAligasebetasubunitOS=NialliacirculansOX=1397GN=glySPE=3SV=1	tr|A0A553SKL8|A0A553SKL8_NIACIGlycine--tRNAligasebetasubunitOS=NialliacirculansOX=1397GN=glySPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.54962158203125	2	419.214309	836.414065	0.33622	0.00014095	4.393	0.0018416	4.7292	0.0019825	419.2159252615101	56.724	0.51028	56.724	56.538	57.048	0					25	11	3	0	0	0	0.028476	1	4705	4705		10.866	0	1	1277100			12626	33630	10355	10367	13767	13767					-0.010685144849617245
FTRILNLK	8	Unmodified	_FTRILNLK_					0	0	0		tr|A0A7D7A633|A0A7D7A633_9CLOTDUF2334domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08770PE=4SV=1	tr|A0A7D7A633|A0A7D7A633_9CLOTDUF2334domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08770PE=4SV=1	tr|A0A7D7A633|A0A7D7A633_9CLOTDUF2334domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08770PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.7841491699219	2	502.816202	1003.61785	-0.89752	-0.00045129	0.61114	0.00030729	-0.28638	-0.000144	502.81642628697523	70.226	0.79996	70.226	69.922	70.722	0					46	19	3	0	0	0	0.028476	1	6749	6749		30.504	14.862	1	2104800			12627	36183	10356	10368	13768	13768					0.11618629956501536
FTRIQRLAM	9	Unmodified	_FTRIQRLAM_					0	0	0			REV__tr|A0A7D6W3C5|A0A7D6W3C5_9CLOTPeptidedeformylaseOS=ClostridiumintestinaleOX=36845GN=defPE=3SV=1	REV__tr|A0A7D6W3C5|A0A7D6W3C5_9CLOTPeptidedeformylaseOS=ClostridiumintestinaleOX=36845GN=defPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2620849609375	2	568.323868	1134.63318	-0.77815	-0.00044224	3.4652	0.0019693	2.687	0.0015271	568.325790829762	26.979	0.30117	26.979	26.742	27.043	0					6	5	2	0	0	0	0.027462	1	761	761		39.253	0	1	12447	+		12628	31912	10357	10369	13769	13769					0.07125173482040736
FTRIRKFTM	9	Unmodified	_FTRIRKFTM_					0	0	0			REV__ENST00000542507.5_2_1:29095522-29095663:+|nuORF	REV__ENST00000542507.5_2_1:29095522-29095663:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.57684326171875	3	400.562104	1198.66448	0.75529	0.00030254	3.8918	0.0015589	4.6471	0.0018614	400.56376735892366	25.778	0.54848	25.778	25.643	26.191	0					19	10	3	0	0	0	0.027462	1	616	616		16.717	0	1	100150	+		12629	27383	10358	10370	13770	13770					0.07309746516148152
FTRKFVFR	8	Unmodified	_FTRKFVFR_					0	0	0		ENSG00000101574|ENST00000574538|METTL4;ENST00000573134.1_1_18:2554662-2567215:-|nuORF	ENSG00000101574|ENST00000574538|METTL4	ENSG00000101574|ENST00000574538|METTL4	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.7680053710938	2	550.821818	1099.62908	2.0104	0.0011073	-0.86652	-0.0004773	1.1438	0.00063005	550.8211280960235	107.43	0.45927	107.43	107.19	107.65	0					30	10	4	0	0	0	0.028476	1	12124	12124		19.36	1.0356	1	1251100			12630	2187	10359	10371	13771	13771					0.08325452050644344
FTRKKEPH	8	Unmodified	_FTRKKEPH_					0	0	0		L1PA5_dup4809|chr6:151863684-151865093:+|1.0617149984704268|0.1855937726213876|2.52|421.0|35|3|sense	L1PA5_dup4809|chr6:151863684-151865093:+|1.0617149984704268|0.1855937726213876|2.52|421.0|35|3|sense	L1PA5_dup4809|chr6:151863684-151865093:+|1.0617149984704268|0.1855937726213876|2.52|421.0|35|3|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.8174438476562	2	521.793258	1041.57196	-0.22183	-0.00011575	-2.5129	-0.0013112	-2.7347	-0.0014269	521.7916977623153	115.88	0.74242	114.48	114.22	114.96	-1.3977					19	14	2	0	0	0	0.028476	1	10814	10814		24.203	0	1	54176			12631	14701	10360	10372	13772	13772					0.05283984774268902
FTRKRTLL	8	Unmodified	_FTRKRTLL_					0	0	0		ENSG00000185219|ENST00000396077|ZNF445	ENSG00000185219|ENST00000396077|ZNF445	ENSG00000185219|ENST00000396077|ZNF445	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.7702026367188	2	517.827101	1033.63965	-0.52526	-0.00027199	-0.43249	-0.00022395	-0.95775	-0.00049595	517.8268922826961	60.415	0.57626	60.415	60.153	60.73	0					25	13	3	0	0	0	0.028476	1	5280	5280		23.042	5.6775	1	783660			12632	8232	10361	10373	13773	13773					0.1241743470509391
FTRKRTLL	8	Unmodified	_FTRKRTLL_					0	0	0		ENSG00000185219|ENST00000396077|ZNF445	ENSG00000185219|ENST00000396077|ZNF445	ENSG00000185219|ENST00000396077|ZNF445	MULTI-MATCH	OvCa9_classI_Rep2	2		2	517.827101	1033.63965	-1.5412	-0.00079807	1.3141	0.00068047	-0.2271	-0.0001176	517.8275741700793	63.037	1.2099	60.293	60.004	61.214	-2.7444	-0.061069	0.00058305	NaN	10.866	35	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66315			12633	8232	10361	10373							0.1241743470509391
FTRLERKRRQR	11	Unmodified	_FTRLERKRRQR_					0	0	0			REV__nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	REV__nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2951049804688	3	515.97808	1544.91241	-0.16842	-8.69E-05	1.0055	0.0005188	0.83704	0.0004319	515.9786027505863	31.655	0.44687	31.655	31.46	31.906	0					22	8	4	0	0	0	0.026364	1	1333	1333		9.2118	3.2108	1	173460	+		12634	20915	10362	10374	13774	13774					0.1617501142814035
FTRLGRPT	8	Unmodified	_FTRLGRPT_					0	0	0			REV__ENST00000484615.5_1_22:39713464-39715605:-|nuORF	REV__ENST00000484615.5_1_22:39713464-39715605:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	474.7549743652344	2	474.274701	946.534849	0.73233	0.00034732	-1.7397	-0.00082512	-1.0074	-0.00047779	474.2739779813047	57.254	0.91616	53.909	53.273	54.189	-3.3449					26	17	2	0	0	0	0.028476	1	3656	3656		31.955	1.4512	1	51750	+		12635	17397	10363	10375	13775	13775					0.059443132285082356
FTRLSVLD	8	Unmodified	_FTRLSVLD_					0	0	0		nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12;nc|ENSG00000052749|Q5JTH9-2|RRP12;ENST00000479481.5_1_10:99131673-99132940:-|nuORF	nc|ENSG00000052749|Q5JTH9-3|RRP12	nc|ENSG00000052749|Q5JTH9-3|RRP12	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.2073974609375	2	475.768917	949.523281	3.3355	0.0015869	-1.0221	-0.00048629	2.3134	0.0011006	475.76830917570527	97.686	0.68611	97.686	97.479	98.165	0					31	15	3	0	0	0	0.028476	1	10712	10712		27.882	0	1	443530			12636	1193	10364	10376	13776	13776					0.04650071414505419
FTRPVLRASS	10	Unmodified	_FTRPVLRASS_					0	0	0		ENST00000481082.1_1_1:157512505-157514867:-|nuORF;nc|ENSG00000143297|Q96RD9-4|FCRL5;nc|ENSG00000143297|Q96RD9-3|FCRL5;ENSG00000143297|ENST00000361835|FCRL5	ENST00000481082.1_1_1:157512505-157514867:-|nuORF	ENST00000481082.1_1_1:157512505-157514867:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.280029296875	2	567.324922	1132.63529	2.0478	0.0011618	-2.4554	-0.001393	-0.40754	-0.00023121	567.3235108673522	108.79	0.26102	108.79	108.58	108.85	0					6	5	2	0	0	0	0.027088	1	12304	12304		14.137	0	1	186250			12637	5029	10365	10377	13777	13777					0.07427925491515452
FTRQEQIN	8	Unmodified	_FTRQEQIN_					0	0	0		nc|ENSG00000198604|Q9NRL2-2|BAZ1A;ENSG00000198604|ENST00000360310|BAZ1A	nc|ENSG00000198604|Q9NRL2-2|BAZ1A	nc|ENSG00000198604|Q9NRL2-2|BAZ1A	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.7702026367188	2	518.26453	1034.51451	-0.43278	-0.0002243	0.66928	0.00034687	0.2365	0.00012257	518.2654978226514	60.641	0.46579	60.641	60.477	60.943	0					14	10	2	0	0	0	0.028476	1	5280	5280		24.203	2.2429	1	148140			12638	8834	10366	10378	13778	13778					-0.001369022219478211
FTRRLKVLR	9	Unmodified	_FTRRLKVLR_					0	0	0		ENST00000358130.6_1_X:80457236-80457332:-|nuORF;ENST00000436386.5_3_X:80453275-80457332:-|nuORF;ENST00000451455.1_3_X:80450782-80457332:-|nuORF	ENST00000358130.6_1_X:80457236-80457332:-|nuORF	ENST00000358130.6_1_X:80457236-80457332:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.3067016601562	2	594.888024	1187.7615	-0.25262	-0.00015028	0.31175	0.00018545	0.059128	3.5175E-05	594.8879235130797	53.949	0.64207	53.949	53.651	54.293	0					27	15	3	0	0	0	0.027462	1	4357	4357		6.3127	0	1	293150			12639	10730	10367	10379	13779	13779					0.17512476787464948
FTRSPELTV	9	Unmodified	_FTRSPELTV_					0	0	0		C9orf3-HIATL1|1|fusion;C9orf3-HIATL1|2|fusion;nc|ENSG00000148120|Q8N6M6-4|AOPEP;nc|ENSG00000148120|Q8N6M6-2|AOPEP;ENSG00000148120|ENST00000375315|AOPEP;C9orf3-HIATL1|3|fusion;C9orf3-HIATL1|4|fusion;nc|ENSG00000148120|Q8N6M6-3|AOPEP	C9orf3-HIATL1|1|fusion	C9orf3-HIATL1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	525.2844848632812	2	525.284931	1048.55531	0.26976	0.0001417	-0.89426	-0.00046974	-0.6245	-0.00032804	525.2844511785617	113.7	2.1235	113.58	113.02	115.14	-0.11777					119	42	4	0	0	0	0.28934	1	10791	10791		64.207	9.431	1	925990			12640	169	10368	10380	13780	13780					0.032974390976505674
FTRSPELTV	9	Unmodified	_FTRSPELTV_					0	0	0		C9orf3-HIATL1|1|fusion;C9orf3-HIATL1|2|fusion;nc|ENSG00000148120|Q8N6M6-4|AOPEP;nc|ENSG00000148120|Q8N6M6-2|AOPEP;ENSG00000148120|ENST00000375315|AOPEP;C9orf3-HIATL1|3|fusion;C9orf3-HIATL1|4|fusion;nc|ENSG00000148120|Q8N6M6-3|AOPEP	C9orf3-HIATL1|1|fusion	C9orf3-HIATL1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.2845458984375	2	525.284931	1048.55531	-0.11003	-5.7795E-05	-0.50009	-0.00026269	-0.61012	-0.00032049	525.2846666449118	114.93	1.879	113.53	112.83	114.71	-1.3977					101	36	4	0	0	0	0.13504	1	10694	10694		87.696	0	1	1115000			12641	169	10368	10380	13781	13781					0.032974390976505674
FTRSRFTR	8	Unmodified	_FTRSRFTR_					0	0	0			REV__ENST00000258418.9_1_2:231683782-231683866:+|nuORF	REV__ENST00000258418.9_1_2:231683782-231683866:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3321533203125	2	535.796332	1069.57811	2.1621	0.0011584	-1.3967	-0.00074834	0.76539	0.00041009	535.7953239485751	78.509	0.94542	78.509	77.924	78.869	0					29	22	2	0	0	0	0.028476	1	7926	7926		29.15	0	1	737480	+		12642	23910	10369	10381	13782	13782					0.04610503005801547
FTRTLAGPLL	10	Unmodified	_FTRTLAGPLL_					0	0	0			REV__NYNRIN|p.A1061Lfs*9|1|0.04|ENSG00000205978|chr14:24414928-24414929|-/TCTTACAAGAACATTTTCCACTTGGT|frameshift_variant	REV__NYNRIN|p.A1061Lfs*9|1|0.04|ENSG00000205978|chr14:24414928-24414929|-/TCTTACAAGAACATTTTCCACTTGGT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	544.8241577148438	2	544.826766	1087.63898	-4.363	-0.0023771	0.3268	0.00017805	-4.0362	-0.002199	544.82700234604	154.97	0.71278	154.74	154.48	155.19	-0.22696					46	16	4	0	0	0	0.85907	1	15809	15809		11.511	0	1	60082	+		12643	29262	10370	10382	13783	13783					0.09866595265384603
FTRYLGFV	8	Unmodified	_FTRYLGFV_					0	0	0			REV__ENST00000532094.5_1_11:433312-441926:-|nuORF	REV__ENST00000532094.5_1_11:433312-441926:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.7924499511719	2	501.774003	1001.53345	-1.2704	-0.00063743	1.1296	0.00056679	-0.14078	-7.0639E-05	501.77433027072857	48.164	0.7973	45.454	45.182	45.979	-2.7097					20	15	2	0	0	0	0.028476	1	2976	2976		57.811	2.3071	1	32549	+		12644	27180	10371	10383	13784	13784					0.032746791397585184
FTSLEECTVD	10	Unmodified	_FTSLEECTVD_					0	0	0		tr|A0A7D6VT01|A0A7D6VT01_9CLOT4-hydroxy-tetrahydrodipicolinatereductaseOS=ClostridiumintestinaleOX=36845GN=dapBPE=3SV=1	tr|A0A7D6VT01|A0A7D6VT01_9CLOT4-hydroxy-tetrahydrodipicolinatereductaseOS=ClostridiumintestinaleOX=36845GN=dapBPE=3SV=1	tr|A0A7D6VT01|A0A7D6VT01_9CLOT4-hydroxy-tetrahydrodipicolinatereductaseOS=ClostridiumintestinaleOX=36845GN=dapBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	571.3331909179688	2	572.247354	1142.48016	0.49896	0.00028553	0.76791	0.00043944	1.2669	0.00072497	572.2476825112115	110.01	0.52724	108.41	108.02	108.54	-1.6011					13	9	2	0	0	0	0.027198	1	10115	10115		26.693	9.3279	1	10986			12645	35072	10372	10384	13785	13785					-0.0853853121575412
FTSNWVCQTL	10	Unmodified	_FTSNWVCQTL_					0	0	0		TMEM204|p.C197Hfs*23|1|0.04|ENSG00000131634|chr16:1554934-1554935|TG/-|frameshift_variant;TMEM204|p.D196Gfs*27|1|0.08|ENSG00000131634|chr16:1554931-1554932|-/GCTCAAC|frameshift_variant;ENSG00000131634|ENST00000566264|TMEM204	TMEM204|p.C197Hfs*23|1|0.04|ENSG00000131634|chr16:1554934-1554935|TG/-|frameshift_variant	TMEM204|p.C197Hfs*23|1|0.04|ENSG00000131634|chr16:1554934-1554935|TG/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	599.7862548828125	2	599.781699	1197.54884	1.8608	0.001116	0.73522	0.00044097	2.596	0.001557	599.7821461219218	135.2	0.51006	135.2	134.95	135.46	0					26	10	4	0	0	0	0.62712	1	15765	15765		38.754	3.6016	1	228120			12646	4079	10373	10385	13786	13786					-0.04202822125353123
FTSSFLPHF	9	Unmodified	_FTSSFLPHF_					0	0	0		ENST00000414513.7_1_X:2536701-2544672:+|nuORF	ENST00000414513.7_1_X:2536701-2544672:+|nuORF	ENST00000414513.7_1_X:2536701-2544672:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.805419921875	2	541.768917	1081.52328	-1.389	-0.00075252	-1.1541	-0.00062525	-2.5431	-0.0013778	541.768449123893	80.783	0.5832	78.072	77.714	78.297	-2.7106					15	11	2	0	0	0	0.027462	1	6580	6580		29.15	0	1	21871			12647	11579	10374	10386	13787	13787					-0.014219285855006092
FTSSKILHA	9	Unmodified	_FTSSKILHA_					0	0	0			REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19	REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19	MULTI-SECPEP	OvCa9_classI_Rep3	3	502.8298645019531	2	502.282192	1002.54983	-0.57521	-0.00028892	1.3286	0.00066731	0.75335	0.00037839	502.2824889508088	98.719	0.87657	97.034	96.697	97.574	-1.685					31	16	2	0	0	0	0.027462	1	6642	6642		38.806	16.846	1	41882	+		12648	16127	10375	10387	13788	13788					0.04865760305847289
FTSVCNPRFL	10	Unmodified	_FTSVCNPRFL_					0	0	0		ENSG00000185821|ENST00000328314|OR6C76	ENSG00000185821|ENST00000328314|OR6C76	ENSG00000185821|ENST00000328314|OR6C76	MULTI-MSMS	OvCa9_classI_Rep3	3	592.3021850585938	2	592.300059	1182.58556	-1.1031	-0.00065338	2.2793	0.00135	1.1761	0.00069663	592.301413895625	81.905	2.5111	79.609	78.932	81.443	-2.2963					125	50	5	0	0	0	0.50999	1	4602	4602		52.937	3.4952	1	2078200			12649	8288	10376	10388	13789	13789					0.0015747449119771773
FTSVIKDM	8	Unmodified	_FTSVIKDM_					0	0	0			REV__ENSG00000174914|ENST00000642097|OR9G1	REV__ENSG00000174914|ENST00000642097|OR9G1	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.28826904296875	2	470.744053	939.473554	-0.095076	-4.4756E-05	-2.8215	-0.0013282	-2.9165	-0.0013729	470.7424754307467	73.379	0.64212	73.379	73.035	73.678	0					25	15	2	0	0	0	0.028476	1	7217	7217		17.365	0	1	470790	+		12650	21858	10377	10389	13790	13790					0.0013962041419972593
FTSYLGFQL	9	Unmodified	_FTSYLGFQL_					0	0	0		tr|A0A553STJ4|A0A553STJ4_NIACIPotassium-transportingATPaseATP-bindingsubunitOS=NialliacirculansOX=1397GN=kdpBPE=3SV=1	tr|A0A553STJ4|A0A553STJ4_NIACIPotassium-transportingATPaseATP-bindingsubunitOS=NialliacirculansOX=1397GN=kdpBPE=3SV=1	tr|A0A553STJ4|A0A553STJ4_NIACIPotassium-transportingATPaseATP-bindingsubunitOS=NialliacirculansOX=1397GN=kdpBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.295654296875	2	538.276575	1074.5386	-1.6674	-0.00089755	-0.070638	-3.8023E-05	-1.7381	-0.00093557	538.2762901583434	92.706	1.1654	90.199	89.247	90.412	-2.5072					29	22	3	0	0	0	0.027461	1	8056	8056		25.574	1.0549	1	58907			12651	34495	10378	10390	13791	13791					0.004309382117071436
FTTATRNLQ	9	Unmodified	_FTTATRNLQ_					0	0	0			REV__IGSF10|p.V2314Efs*19|1|0.09|ENSG00000152580|chr3:151437598-151437620|CTCTCCACCTTCATTTCGGGCCA/-|frameshift_variant	REV__IGSF10|p.V2314Efs*19|1|0.09|ENSG00000152580|chr3:151437598-151437620|CTCTCCACCTTCATTTCGGGCCA/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2918701171875	2	526.28018	1050.54581	-1.0918	-0.00057461	-0.13717	-7.2192E-05	-1.229	-0.0006468	526.2797960069198	26.717	0.29998	26.717	26.492	26.792	0					8	5	2	0	0	0	0.027462	1	713	713		39.253	0	1	25692	+		12652	20294	10379	10391	13792	13792					0.022556708121328484
FTTFMRNKNL	10	Unmodified	_FTTFMRNKNL_					0	0	0		ENSG00000165807|ENST00000298705|PPP1R36;PPP1R36|p.Y199Sfs*18|1|0.05|ENSG00000165807|chr14:64574516-64574517|-/C|frameshift_variant	ENSG00000165807|ENST00000298705|PPP1R36	ENSG00000165807|ENST00000298705|PPP1R36	MULTI-SECPEP	OvCa99_classI_Rep5	1	636.3609619140625	2	636.33189	1270.64923	1.2969	0.00082528	1.8265	0.0011623	3.1234	0.0019876	636.33307328446	123.87	0.31639	123.87	123.69	124.01	0					11	6	2	0	0	0	0.02663	1	14294	14294		51.193	6.1705	1	98657			12653	6601	10380	10392	13793	13793					0.024728349283122952
FTTRNQVEP	9	Unmodified	_FTTRNQVEP_					0	0	0		nc|ENSG00000122882|O95905-2|ECD;ENSG00000122882|ENST00000372979|ECD;nc|ENSG00000122882|O95905-3|ECD	nc|ENSG00000122882|O95905-2|ECD	nc|ENSG00000122882|O95905-2|ECD	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.2755126953125	2	546.277638	1090.54072	-1.7314	-0.0009458	-1.9845	-0.0010841	-3.7158	-0.0020299	546.2765092095829	119.76	1.3636	118.42	118.03	119.4	-1.3444					60	25	3	0	0	0	0.37135	1	11248	11248		54.776	3.4409	1	223170			12654	3563	10381	10393	13794	13794					-0.0009263305048534676
FTTSSIYTCT	10	Unmodified	_FTTSSIYTCT_					0	0	0			REV__ENST00000344691.8_1_21:36259869-36260010:-|nuORF	REV__ENST00000344691.8_1_21:36259869-36260010:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.2996826171875	2	562.25244	1122.49033	1.6551	0.0009306	-3.8187	-0.0021471	-2.1635	-0.0012165	562.2498649353992	150.39	0.69867	150.39	150.1	150.79	0					25	13	3	0	0	0	0.027147	1	17596	17596		15.642	0.77694	1	54942	+		12655	24684	10382	10394	13795	13795					-0.06601923490484296
FTTTVLTCI	9	Unmodified	_FTTTVLTCI_					0	0	0		nc|ENSG00000156869|Q6ZNA5-2|FRRS1;ENSG00000156869|ENST00000646001|FRRS1;ENST00000492943.1_1_1:100177041-100181213:-|nuORF	nc|ENSG00000156869|Q6ZNA5-2|FRRS1	nc|ENSG00000156869|Q6ZNA5-2|FRRS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.2934875488281	2	499.764986	997.515419	2.3109	0.0011549	2.6437	0.0013212	4.9546	0.0024761	499.76663804572996	75.066	0.44889	75.066	74.802	75.251	0					15	10	2	0	0	0	0.027462	1	7421	7421		17.365	0	1	492040			12656	5860	10383	10395	13796	13796					0.01656176102721929
FTTTVLTCI	9	Unmodified	_FTTTVLTCI_					0	0	0		nc|ENSG00000156869|Q6ZNA5-2|FRRS1;ENSG00000156869|ENST00000646001|FRRS1;ENST00000492943.1_1_1:100177041-100181213:-|nuORF	nc|ENSG00000156869|Q6ZNA5-2|FRRS1	nc|ENSG00000156869|Q6ZNA5-2|FRRS1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	499.764986	997.515419	-1.177	-0.00058823	5.1624	0.00258	3.9854	0.0019917	499.7674676978647	77.24	0.67464	74.869	74.61	75.285	-2.3715	-0.09865	0.00055098	NaN	24.203	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17082			12657	5860	10383	10395							0.01656176102721929
FTTVKLLW	8	Unmodified	_FTTVKLLW_					0	0	0		ENST00000555826.5_1_14:45369638-45373733:+|nuORF;ENSG00000179476|ENST00000325192|C14orf28	ENST00000555826.5_1_14:45369638-45373733:+|nuORF	ENST00000555826.5_1_14:45369638-45373733:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.3081359863281	2	504.299853	1006.58515	0.11827	5.9642E-05	3.8736	0.0019534	3.9918	0.0020131	504.30128457836247	111.27	0.89476	109.76	109.42	110.32	-1.5111					27	16	2	0	0	0	0.028476	1	10217	10217		14.664	0	1	124150			12658	7825	10384	10396	13797	13797					0.08212422833662458
FTVESWPLVPL	11	Unmodified	_FTVESWPLVPL_					0	0	0			REV__ENST00000463096.5_1_2:97751812-97756058:-|nuORF	REV__ENST00000463096.5_1_2:97751812-97756058:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	644.34814453125	2	644.352814	1286.69108	-4.6999	-0.0030284	-0.20147	-0.00012982	-4.9013	-0.0031582	644.3525813109911	156.61	0.94965	155.07	154.76	155.71	-1.545					72	28	3	0	0	0	0.70518	1	15524	15524		27.882	8.7787	1	115240	+		12659	19895	10385	10397	13798	13798					0.05919713888465594
FTVEWLSSG	9	Unmodified	_FTVEWLSSG_					0	0	0			REV__ENST00000508366.5_1_5:81605958-81640198:+|nuORF	REV__ENST00000508366.5_1_5:81605958-81640198:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.2724609375	2	513.250557	1024.48656	-0.90634	-0.00046518	-4.0622	-0.0020849	-4.9685	-0.0025501	513.2481556383755	104.63	0.71936	104.63	104.19	104.91	0					21	16	2	0	0	0	0.027462	1	11713	11713		38.806	3.6054	1	123310	+		12660	26912	10386	10398	13799	13799					-0.024702252020460946
FTVHYLAKS	9	Unmodified	_FTVHYLAKS_					0	0	0			REV__nc|ENSG00000231028|P0C7V0|AHI1-DT	REV__nc|ENSG00000231028|P0C7V0|AHI1-DT	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.3260498046875	2	533.290017	1064.56548	2.1332	0.0011376	-0.86036	-0.00045882	1.2728	0.00067878	533.2893859831611	110.51	0.35944	110.51	110.22	110.58	0					12	7	2	0	0	0	0.027462	1	12516	12516		9.1829	3.6251	1	193790	+		12661	29146	10387	10399	13800	13800					0.03578046822894976
FTVIGSYLLT	10	Unmodified	_FTVIGSYLLT_					0	0	0			REV__nc|ENSG00000211898|P01880|IGHD	REV__nc|ENSG00000211898|P01880|IGHD	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.7886352539062	2	557.313158	1112.61176	-0.67666	-0.00037711	4.4426	0.0024759	3.766	0.0020988	557.3153637634244	27.472	0.40018	27.472	27.241	27.641	0					11	7	2	0	0	0	0.027021	1	790	790		15.642	5.9362	1	68919	+		12662	29126	10388	10400	13801	13801					0.05996066934335431
FTVKALYEI	9	Unmodified	_FTVKALYEI_					0	0	0			REV__ENSG00000106302|ENST00000223026|HYAL4	REV__ENSG00000106302|ENST00000223026|HYAL4	MULTI-MSMS	OvCa99_classI_Rep5	1	542.3096313476562	2	542.307875	1082.6012	1.284	0.0006963	0.90375	0.00049011	2.1877	0.0011864	542.3083189309307	146.54	0.5396	146.54	146.33	146.87	0					20	10	3	0	0	0	0.55011	1	17143	17143		37.812	2.6595	1	89023	+		12663	17791	10389	10401	13802	13802					0.06320084279900584
FTVKLRLLV	9	Unmodified	_FTVKLRLLV_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	OvCa99_classI_Rep5	1	544.8641967773438	2	544.863152	1087.71175	1.2989	0.00070775	0.63374	0.0003453	1.9327	0.0010531	544.8632509128331	111.63	1.9097	111.63	111.24	113.15	0					90	41	3	0	0	0	0.40818	2	12702	12702;12734		51.193	19.663	1	738120			12664	3094	10390	10402	13803;13804	13803					0.17140349058786342
FTVRHYAGTV	10	Unmodified	_FTVRHYAGTV_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MULTI-SECPEP	OvCa9_classI_Rep2	2	576.7835693359375	2	575.803823	1149.59309	-1.8756	-0.00108	-0.66099	-0.0003806	-2.5366	-0.0014606	575.8037207322105	101.76	2.0763	100.99	100.42	102.5	-0.764					92	41	4	0	0	0	0.026734	1	9367	9367		47.657	6.8792	1	280840			12665	9529	10391	10403	13805	13805					0.024279500831198675
FTVRYPTML	9	Unmodified	_FTVRYPTML_					0	0	0			REV__ENST00000371482.5_2_9:140343848-140347544:-|nuORF	REV__ENST00000371482.5_2_9:140343848-140347544:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	564.2992553710938	2	564.299527	1126.5845	1.1607	0.00065497	-0.319	-0.00018001	0.84168	0.00047496	564.2991848172364	123.21	1.3481	122.17	121.84	123.18	-1.0377					40	23	2	0	0	0	0.46356	1	9512	9512		45.972	1.5951	1	156180	+		12666	21119	10392	10404	13806	13806					0.02627260122289954
FTVSFREG	8	Unmodified	_FTVSFREG_					0	0	0			REV__chr21:41427866-41430594|239|13.93|0.5|4.81|+|1|TE_info:Charlie2b,Charlie2b_dup3470,hAT-Charlie,DNA,acceptor,+,41430594,41430715|MX1,None|5	REV__chr21:41427866-41430594|239|13.93|0.5|4.81|+|1|TE_info:Charlie2b,Charlie2b_dup3470,hAT-Charlie,DNA,acceptor,+,41430594,41430715|MX1,None|5	MULTI-SECPEP	OvCa9_classI_Rep2	2	470.7551574707031	2	471.737617	941.460681	-0.46273	-0.00021829	0.48807	0.00023024	0.025342	1.1955E-05	471.737724061222	59.561	1.0391	56.781	56.399	57.438	-2.7801					37	19	3	0	0	0	0.028476	1	4348	4348		30.504	17.544	1	51777	+		12667	16029	10393	10405	13807	13807					-0.012390746536652841
FTVTGGMFML	10	Oxidation (M)	_FTVTGGMFM(Oxidation (M))L_		FTVTGGM(0.001)FM(0.999)L		FTVTGGM(-31)FM(31)L	0	0	1			REV__tr|A0A553SKG4|A0A553SKG4_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_18625PE=4SV=1	REV__tr|A0A553SKG4|A0A553SKG4_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_18625PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	560.2664794921875	2	560.264296	1118.51404	1.6235	0.00090958	0.48943	0.00027421	2.1129	0.0011838	560.264521520652	142.84	2.0644	142.84	142.44	144.5	0					90	41	3	0	0	0	0.14489	1	16694	16694		102.77	15.019	2	3077300	+		12668	30122	10394	10406	13808	13808		661			-0.04047781257668248
FTVVEMLSL	9	Unmodified	_FTVVEMLSL_					0	0	0			REV__ENST00000530682.5_1_8:146054445-146055231:+|nuORF	REV__ENST00000530682.5_1_8:146054445-146055231:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	519.7810668945312	2	519.780636	1037.54672	0.27636	0.00014365	-1.448	-0.00075263	-1.1716	-0.00060898	519.7796797317686	141.62	0.59845	141.62	141.39	141.98	0					19	11	2	0	0	0	0.35444	1	16545	16545		56.721	3.3696	1	132840	+		12669	27208	10395	10407	13809	13809					0.029447491368500778
FTWRLKREKKK	11	Unmodified	_FTWRLKREKKK_					0	0	0		ENST00000496972.6_1_2:25600096-25600174:-|nuORF	ENST00000496972.6_1_2:25600096-25600174:-|nuORF	ENST00000496972.6_1_2:25600096-25600174:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.3086242675781	3	507.312177	1518.9147	-5.239	-0.0026578	0.4981	0.00025269	-4.7409	-0.0024051	507.3121827583452	162.21	1.6448	161.98	160.99	162.64	-0.22697					94	32	4	0	0	0	0.72582	2	16476	16476;16534		3.4087	0.19739	1	66373			12670	12798	10396	10408	13810;13811	13810					0.1760004711320562
FTWVLIDI	8	Unmodified	_FTWVLIDI_					0	0	0		tr|A0A7D6VPT7|A0A7D6VPT7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18050PE=4SV=1	tr|A0A7D6VPT7|A0A7D6VPT7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18050PE=4SV=1	tr|A0A7D6VPT7|A0A7D6VPT7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18050PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.26531982421875	2	503.784036	1005.55352	-0.36998	-0.00018639	4.4607	0.0022473	4.0908	0.0020609	504.2877862608631	60.191	0.43633	60.191	59.802	60.238	0					11	10	2	0	0	0	0.028476	1	5204	5204		55.504	0	1	76308			12671	34798	10397	10409	13812	13812					0.0509643007970908
FTWYLQRGEK	10	Unmodified	_FTWYLQRGEK_					0	0	0			REV__ENSG00000161682|ENST00000293443|FAM171A2	REV__ENSG00000161682|ENST00000293443|FAM171A2	MULTI-SECPEP	OvCa9_classI_Rep2	2	442.2351379394531	3	443.2313	1326.67207	0.49156	0.00021788	-0.2527	-0.00011201	0.23886	0.00010587	443.23129612705105	53.525	0.84619	50.711	50.479	51.325	-2.8139					25	16	2	0	0	0	0.026819	1	3622	3622		28.577	0	1	19553	+		12672	20704	10398	10410	13813	13813					0.021801773174047412
FTYDILDV	8	Unmodified	_FTYDILDV_					0	0	0			REV__tr|A0A553SIV8|A0A553SIV8_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_15630PE=3SV=1	REV__tr|A0A553SIV8|A0A553SIV8_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_15630PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.2707214355469	2	493.247483	984.480414	2.0319	0.0010022	-2.9597	-0.0014599	-0.92786	-0.00045766	493.24543338140234	82.372	0.34464	82.372	82.264	82.609	0					14	7	2	0	0	0	0.028476	1	8522	8522		42.474	10.52	1	132790	+		12673	29935	10399	10411	13814	13814					-0.012447434335626895
FTYDILDV	8	Unmodified	_FTYDILDV_					0	0	0			REV__tr|A0A553SIV8|A0A553SIV8_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_15630PE=3SV=1	REV__tr|A0A553SIV8|A0A553SIV8_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_15630PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	493.247483	984.480414	-1.3114	-0.00064683	-2.861	-0.0014112	-4.1724	-0.002058	493.24596835955805	84.956	0.58804	82.735	82.398	82.986	-2.2204	0.066164	0.00015117	NaN	42.474	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27905	+		12674	29935	10399	10411							-0.012447434335626895
FTYDILDV	8	Unmodified	_FTYDILDV_					0	0	0			REV__tr|A0A553SIV8|A0A553SIV8_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_15630PE=3SV=1	REV__tr|A0A553SIV8|A0A553SIV8_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_15630PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	493.247483	984.480414	1.5583	0.00076862	-3.57	-0.0017609	-2.0117	-0.00099229	493.2452033905039	85.546	0.68384	82.9	82.66	83.344	-2.6463	0.23086	-0.00054827	NaN	42.474	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24292	+		12675	29935	10399	10411							-0.012447434335626895
FTYECDEVAS	10	Unmodified	_FTYECDEVAS_					0	0	0			REV__IGF2R|p.S1818Ifs*11|1|0.13|ENSG00000197081|chr6:160078335-160078336|-/AT|frameshift_variant	REV__IGF2R|p.S1818Ifs*11|1|0.13|ENSG00000197081|chr6:160078335-160078336|-/AT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	582.3018188476562	2	582.231704	1162.44886	-1.7045	-0.00099241	-2.6702	-0.0015547	-4.3747	-0.0025471	582.230042077596	108.99	0.55475	107.26	107.02	107.58	-1.7256					12	10	2	0	0	0	0.027147	1	10011	10011		10.265	0	1	9694.3	+		12676	22890	10400	10412	13815	13815					-0.1258710424981473
FTYKLIRTSAI	11	Unmodified	_FTYKLIRTSAI_					0	0	0			REV__tr|A0A7D6VTY5|A0A7D6VTY5_9CLOTLPXTGcellwallanchordomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23330PE=3SV=1	REV__tr|A0A7D6VTY5|A0A7D6VTY5_9CLOTLPXTGcellwallanchordomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23330PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	438.2336730957031	3	438.258967	1311.75507	-0.95478	-0.00041844	-3.0194	-0.0013233	-3.9742	-0.0017417	438.25747598057166	48.768	0.782	45.66	45.399	46.181	-3.1077					25	14	3	0	0	0	0.026204	1	2740	2740		16.53	0	1	25915	+		12677	31639	10401	10413	13816	13816					0.11166494045437503
FTYKVKRVRI	10	Unmodified	_FTYKVKRVRI_					0	0	0		tr|A0A553SIP2|A0A553SIP2_NIACIClassDsortaseOS=NialliacirculansOX=1397GN=CEQ21_15140PE=4SV=1	tr|A0A553SIP2|A0A553SIP2_NIACIClassDsortaseOS=NialliacirculansOX=1397GN=CEQ21_15140PE=4SV=1	tr|A0A553SIP2|A0A553SIP2_NIACIClassDsortaseOS=NialliacirculansOX=1397GN=CEQ21_15140PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	437.2744140625	3	437.274952	1308.80303	-0.48192	-0.00021073	-2.8	-0.0012244	-3.2819	-0.0014351	437.2736694937968	70.283	1.7065	66.802	66.393	68.099	-3.4812					97	34	4	0	0	0	0.62712	2	5313	5313;5325		38.754	7.1193	1	688450			12678	33404	10402	10414	13817;13818	13817					0.16097612756107083
FTYLYVFDI	9	Unmodified	_FTYLYVFDI_					0	0	0		tr|A0A553SHU1|A0A553SHU1_NIACIFUSCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_13515PE=3SV=1	tr|A0A553SHU1|A0A553SHU1_NIACIFUSCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_13515PE=3SV=1	tr|A0A553SHU1|A0A553SHU1_NIACIFUSCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_13515PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	590.8001098632812	2	590.799883	1179.58521	1.1888	0.00070233	-1.4158	-0.00083644	-0.22699	-0.00013411	590.7985778833332	138.52	3.6805	138.52	137.91	141.59	0					181	76	4	0	0	0	0.53957	1	16135	16135		38.806	3.1879	1	227430			12679	33312	10403	10415	13819	13819					0.002603780430263214
FTYSSLLLSH	10	Unmodified	_FTYSSLLLSH_					0	0	0		nc|ENSG00000197162|A8K8V0-2|ZNF785;ENSG00000197162|ENST00000395216|ZNF785	nc|ENSG00000197162|A8K8V0-2|ZNF785	nc|ENSG00000197162|A8K8V0-2|ZNF785	MULTI-SECPEP	OvCa9_classI_Rep2	2	583.8157348632812	2	584.305864	1166.59717	0.24701	0.00014433	-2.9847	-0.001744	-2.7377	-0.0015996	584.303783554893	81.471	1.0289	79.822	79.514	80.543	-1.6485					31	19	2	0	0	0	0.026915	1	6888	6888		27.882	0	1	74020			12680	8685	10404	10416	13820	13820					0.020539947862062036
FTYWQKVKHSY	11	Unmodified	_FTYWQKVKHSY_					0	0	0			REV__tr|A0A7D6VQQ7|A0A7D6VQQ7_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23200PE=3SV=1	REV__tr|A0A7D6VQQ7|A0A7D6VQQ7_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23200PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.2767333984375	3	496.254105	1485.74048	-0.15082	-7.4846E-05	-0.16659	-8.2673E-05	-0.31742	-0.00015752	496.25398707811826	58.54	1.4126	58.54	57.48	58.892	0					36	33	2	0	0	0	0.026302	1	4937	4937		12.433	0	1	203050	+		12681	31347	10405	10417	13821	13821					0.017044218972841918
FVAASLSIQK	10	Unmodified	_FVAASLSIQK_					0	0	0		DDX42|p.N718I|1|0.03|ENSG00000198231|chr17:63817734-63817734|A/T|missense_variant	DDX42|p.N718I|1|0.03|ENSG00000198231|chr17:63817734-63817734|A/T|missense_variant	DDX42|p.N718I|1|0.03|ENSG00000198231|chr17:63817734-63817734|A/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.312744140625	2	532.310949	1062.60735	-0.82082	-0.00043693	0.53141	0.00028288	-0.28941	-0.00015405	532.3110919430302	56.928	1.4764	53.583	53.171	54.647	-3.3449					62	28	3	0	0	0	0.45225	1	3671	3671		60.972	2.19	1	387360			12682	720	10406	10418	13822	13822					0.07854602511406483
FVAASLSIQK	10	Unmodified	_FVAASLSIQK_					0	0	0		DDX42|p.N718I|1|0.03|ENSG00000198231|chr17:63817734-63817734|A/T|missense_variant	DDX42|p.N718I|1|0.03|ENSG00000198231|chr17:63817734-63817734|A/T|missense_variant	DDX42|p.N718I|1|0.03|ENSG00000198231|chr17:63817734-63817734|A/T|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	532.310949	1062.60735	-1.8175	-0.00096747	1.738	0.00092515	-0.079509	-4.2324E-05	532.3116809478909	56.263	1.1891	53.459	53.027	54.216	-2.804	-0.06218	0.00077702	NaN	60.972	60	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115310			12683	720	10406	10418							0.07854602511406483
FVAGMFVSGG	10	Unmodified	_FVAGMFVSGG_					0	0	0		ENST00000460518.1_1_6:133108648-133118195:-|nuORF;SLC18B1|p.P269Tfs*28|1|0.1|ENSG00000146409|chr6:132776423-132776424|-/G|frameshift_variant;ENSG00000146409|ENST00000275227|SLC18B1	ENST00000460518.1_1_6:133108648-133118195:-|nuORF	ENST00000460518.1_1_6:133108648-133118195:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	486.2403564453125	2	486.236396	970.458238	-0.40084	-0.0001949	3.7322	0.0018147	3.3314	0.0016198	486.23807952492217	53.131	4.8343	53.131	51.747	56.581	0					169	114	2	0	0	0	0.45225	1	4086	4086		60.972	3.1607	1	978250			12684	5288	10407	10419	13823	13823					-0.028172463829719163
FVAGWISGE	9	Unmodified	_FVAGWISGE_					0	0	0		ENST00000529431.1_1_11:65149344-65149959:-|nuORF;ENST00000531791.1_1_11:65149344-65149515:-|nuORF	ENST00000529431.1_1_11:65149344-65149959:-|nuORF	ENST00000529431.1_1_11:65149344-65149959:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.2939758300781	2	483.239993	964.465432	0.20056	9.6918E-05	3.8282	0.00185	4.0288	0.0019469	483.2419374277653	90.283	0.91356	87.708	87.298	88.212	-2.575					25	17	2	0	0	0	0.027462	1	7830	7830		52.299	7.7681	1	21094			12685	13274	10408	10420	13824	13824					-0.0182219051090442
FVAHLINQN	9	Unmodified	_FVAHLINQN_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.2847290039062	2	528.285266	1054.55598	-0.42245	-0.00022318	-0.6514	-0.00034413	-1.0739	-0.0005673	528.284824410708	142.01	0.99675	140.54	140.24	141.23	-1.4627					54	18	4	0	0	0	0.25214	1	13889	13889		68.485	10.673	1	263670			12686	6318	10409	10421	13825	13825					0.0308827853737057
FVAHYYGASL	10	Unmodified	_FVAHYYGASL_					0	0	0		nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1;ENSG00000138036|ENST00000260605|DYNC2LI1;nc|ENSG00000138036|Q8TCX1-2|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1	MULTI-SECPEP	OvCa9_classI_Rep2	2	564.3241577148438	2	564.279649	1126.54475	-0.94911	-0.00053557	4.4272	0.0024982	3.4781	0.0019626	564.282036202436	101.72	1.9295	100.95	100.27	102.2	-0.764					54	38	2	0	0	0	0.026752	1	9341	9341		44.117	8.9161	1	62977			12687	4650	10410	10422	13826	13826					-0.01346543556769575
FVALFIILF	9	Unmodified	_FVALFIILF_					0	0	0			REV__tr|A0A7D6VNP0|A0A7D6VNP0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13400PE=4SV=1	REV__tr|A0A7D6VNP0|A0A7D6VNP0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13400PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2938232421875	2	541.836071	1081.65759	2.047	0.0011091	3.3041	0.0017903	5.351	0.0028994	541.8376213654899	100.09	0.46658	100.09	99.896	100.36	0					24	10	3	0	0	0	0.027462	1	11075	11075		29.842	1.9593	1	709240	+		12688	31196	10411	10423	13827	13827					0.1200275690723629
FVALLHDSIL	10	Unmodified	_FVALLHDSIL_					0	0	0			REV__ENSG00000162927|ENST00000316752|PUS10	REV__ENSG00000162927|ENST00000316752|PUS10	MULTI-MSMS	OvCa9_classI_Rep3	3	564.3255615234375	2	564.326599	1126.63865	-0.81585	-0.00046041	-3.4969	-0.0019734	-4.3127	-0.0024338	564.3246540994279	102.18	2.4595	100.66	100.27	102.73	-1.5211					131	46	5	0	0	0	0.46756	1	7069	7069		58.782	5.4305	1	5848300	+		12689	20792	10412	10424	13828	13828					0.08039175545513899
FVALVIMFW	9	Unmodified	_FVALVIMFW_					0	0	0		ENSG00000138942|ENST00000326132|RNF185;nc|ENSG00000138942|Q96GF1-2|RNF185	ENSG00000138942|ENST00000326132|RNF185	ENSG00000138942|ENST00000326132|RNF185	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.7930297851562	2	563.311906	1124.60926	2.6493	0.0014924	1.9351	0.0010901	4.5845	0.0025825	563.3111094814849	137.26	0.38574	137.26	137.06	137.45	0					15	7	3	0	0	0	0.027462	1	16015	16015		39.021	0	1	24810			12690	4739	10413	10425	13829	13829					0.051939399956836496
FVAMDPSNGYV	11	Unmodified	_FVAMDPSNGYV_					0	0	0		tr|A0A553SI65|A0A553SI65_NIACIPBP1Afamilypenicillin-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_14170PE=4SV=1	tr|A0A553SI65|A0A553SI65_NIACIPBP1Afamilypenicillin-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_14170PE=4SV=1	tr|A0A553SI65|A0A553SI65_NIACIPBP1Afamilypenicillin-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_14170PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	600.2713623046875	2	600.273706	1198.53286	-4.8728	-0.002925	2.1357	0.001282	-2.7371	-0.001643	600.2748840186918	159.86	2.843	158.53	158.01	160.85	-1.3316					169	56	5	0	0	0	0.72473	1	13806	13806		19.104	0.77911	1	277240			12691	33349	10414	10426	13830	13830					-0.058465283622808784
FVAPKALAR	9	Unmodified	_FVAPKALAR_					0	0	0			REV__ENSG00000150990|ENST00000308736|DHX37	REV__ENSG00000150990|ENST00000308736|DHX37	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.2387390136719	2	486.803094	971.591636	-0.32841	-0.00015987	3.5284	0.0017176	3.1999	0.0015577	486.80472965957347	51.525	0.29457	51.525	51.332	51.627	0					9	6	2	0	0	0	0.027462	1	3966	3966		44.117	25.792	1	141530	+		12692	20209	10415	10427	13831	13831					0.10470360785029698
FVCASWARRGF	11	Unmodified	_FVCASWARRGF_					0	0	0		ENSG00000189409|ENST00000356026|MMP23B;nc|ENSG00000189409|O75900-3|MMP23B;nc|ENSG00000189409|O75900-2|MMP23B	ENSG00000189409|ENST00000356026|MMP23B	ENSG00000189409|ENST00000356026|MMP23B	MULTI-MSMS	OvCa9_classI_Rep4_	4	433.88531494140625	3	433.885358	1298.63425	0.56147	0.00024361	-1.2375	-0.00053695	-0.67607	-0.00029334	433.8848641724313	22.088	1.8023	20.749	20.371	22.174	-1.3386					139	48	6	0	0	0	0.69735	1	300	300		30.569	1.0181	1	1087600			12693	8556	10416	10428	13832	13832					-0.003126121490595324
FVCGFFVWS	9	Unmodified	_FVCGFFVWS_					0	0	0			REV__KCNJ2|p.L97V|1|0.11|ENSG00000123700|chr17:70175328-70175328|C/G|missense_variant	REV__KCNJ2|p.L97V|1|0.11|ENSG00000123700|chr17:70175328-70175328|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	546.2535400390625	2	546.254588	1090.49462	-1.4524	-0.00079336	-0.28306	-0.00015462	-1.7354	-0.00094799	546.254261928264	119.84	1.7272	119.67	119.3	121.03	-0.17138					86	34	4	0	0	0	0.52083	1	11532	11532		40.573	6.4001	1	216370	+		12694	28326	10417	10429	13833	13833					-0.04700369486272393
FVCGMHQTED	10	Unmodified	_FVCGMHQTED_					0	0	0			REV__ENSG00000100038|ENST00000357179|TOP3B	REV__ENSG00000100038|ENST00000357179|TOP3B	MULTI-SECPEP	OvCa9_classI_Rep2	2	582.837158203125	2	583.733891	1165.45323	0.29048	0.00016956	-3.1339	-0.0018294	-2.8434	-0.0016598	584.2337392811811	124.9	0.64118	124.66	124.37	125.01	-0.2359					20	12	2	0	0	0	0.027334	1	12156	12156		17.365	6.4994	1	10426	+		12695	17356	10418	10430	13834	13834					-0.12287918307924883
FVCGMHQTED	10	Unmodified	_FVCGMHQTED_					0	0	0			REV__ENSG00000100038|ENST00000357179|TOP3B	REV__ENSG00000100038|ENST00000357179|TOP3B	MULTI-MATCH	OvCa9_classI_Rep3	3		2	583.733891	1165.45323	0.27454	0.00016026	-2.4547	-0.0014329	-2.1801	-0.0012726	584.2341262365395	125.49	0.67269	124.44	124.16	124.83	-1.0519	-0.063002	-0.00067719	NaN	21.96	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15020	+		12696	17356	10418	10430							-0.12287918307924883
FVCHVIYDV	9	Unmodified	_FVCHVIYDV_					0	0	0		ENST00000343217.6_1_2:241503143-241503332:+|nuORF	ENST00000343217.6_1_2:241503143-241503332:+|nuORF	ENST00000343217.6_1_2:241503143-241503332:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	547.7732543945312	2	547.770603	1093.52665	-0.56935	-0.00031187	3.3397	0.0018294	2.7703	0.0015175	547.772429664708	48.433	2.9193	48.433	48.116	51.036	0					172	66	6	0	0	0	0.42057	1	3650	3650		50.025	2.3672	1	29990000			12697	10594	10419	10431	13835	13835					-0.016370018031238942
FVCIIIAIL	9	Unmodified	_FVCIIIAIL_					0	0	0		L1MB3_dup16926|chr22:15811040-15811839:+|1.0764931184738016|0.3095763404933719|1.8|423.0|57|3|anti-sense	L1MB3_dup16926|chr22:15811040-15811839:+|1.0764931184738016|0.3095763404933719|1.8|423.0|57|3|anti-sense	L1MB3_dup16926|chr22:15811040-15811839:+|1.0764931184738016|0.3095763404933719|1.8|423.0|57|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.257568359375	2	502.814282	1003.61401	0.10623	5.3412E-05	3.5686	0.0017943	3.6748	0.0018478	502.81601968824833	62.313	0.29182	62.313	62.209	62.501	0					8	6	2	0	0	0	0.027462	1	5551	5551		29.842	0	1	149060			12698	14600	10420	10432	13836	13836					0.11234824138421118
FVCILVLCKAL	11	Unmodified	_FVCILVLCKAL_					0	0	0			REV__ENST00000314940.6_1_5:137088427-137088670:-|nuORF	REV__ENST00000314940.6_1_5:137088427-137088670:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	611.355224609375	2	611.358531	1220.70251	-3.1571	-0.0019301	-0.83397	-0.00050986	-3.9911	-0.00244	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.70518	1	12906	12906		27.882	1.1893	1	666990	+		12699	24388	10421	10433	13837	13837					0.10098496386626721
FVCLLKKL	8	Unmodified	_FVCLLKKL_					0	0	0			REV__ENST00000262605.8_1_20:43119153-43119294:+|nuORF	REV__ENST00000262605.8_1_20:43119153-43119294:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.3067932128906	2	482.306624	962.598695	0.55527	0.00026781	-1.0066	-0.00048549	-0.45132	-0.00021767	482.30597189609745	140.99	1.301	139.53	139.2	140.5	-1.4627					53	24	3	0	0	0	0.74679	1	13814	13814		28.254	7.7724	1	78534	+		12700	23979	10422	10434	13838	13838					0.11589957341243462
FVCLLKKL	8	Unmodified	_FVCLLKKL_					0	0	0			REV__ENST00000262605.8_1_20:43119153-43119294:+|nuORF	REV__ENST00000262605.8_1_20:43119153-43119294:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	482.306624	962.598695	-2.1206	-0.0010228	1.3607	0.00065628	-0.75988	-0.00036649	482.30712673394584	140.57	0.73602	139.54	139.33	140.07	-1.0339	0.0050625	0.0016915	NaN	28.254	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17957	+		12701	23979	10422	10434							0.11589957341243462
FVCVAFNV	8	Carbamidomethyl (C)	_FVC(Carbamidomethyl (C))VAFNV_	FVC(1)VAFNV		FVC(63)VAFNV		0	1	0			REV__ENST00000299977.8_1_17:33600383-33600500:+|nuORF	REV__ENST00000299977.8_1_17:33600383-33600500:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	478.2417907714844	2	478.238938	954.463324	0.49508	0.00023676	2.2307	0.0010668	2.7258	0.0013036	478.2400569799378	66.746	1.6997	66.746	66.452	68.152	0					115	42	5	0	0	0	0.60486	1	6181	6181		62.978	8.2138	1	26673000	+		12702	24226	10423	10435	13839	13839	286				-0.015729425203630854
FVDALRCL	8	Unmodified	_FVDALRCL_					0	0	0		ENST00000478990.5_1_7:104654969-104681317:+|nuORF	ENST00000478990.5_1_7:104654969-104681317:+|nuORF	ENST00000478990.5_1_7:104654969-104681317:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	468.2572021484375	2	468.752213	935.489873	0.19877	9.3173E-05	1.6862	0.0007904	1.885	0.00088357	468.7530926198045	46.509	0.30708	46.509	46.369	46.676	0					14	6	3	0	0	0	0.028476	1	3277	3277		25.45	7.1258	1	306000			12703	12500	10424	10436	13840	13840					0.019547463709727708
FVDDPADIWN	10	Unmodified	_FVDDPADIWN_					0	0	0			REV__nc|ENSG00000182979|Q13330-3|MTA1	REV__nc|ENSG00000182979|Q13330-3|MTA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	595.3388671875	2	596.269478	1190.5244	1.0893	0.0006495	4.0843	0.0024353	5.1735	0.0030848	596.2717899205993	153.78	1.7764	153.78	153.5	155.27	0					72	35	4	0	0	0	0.026931	1	17988	17988		37.812	13.609	1	336900	+		12704	22331	10425	10437	13841	13841					-0.06323759007227636
FVDICPLVLI	10	Unmodified	_FVDICPLVLI_					0	0	0			REV__nc|ENSG00000133115|Q8TAV4-2|STOML3	REV__nc|ENSG00000133115|Q8TAV4-2|STOML3	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.2993774414062	2	566.327753	1130.64095	2.0424	0.0011567	4.0055	0.0022684	6.0478	0.0034251	566.327498031871	134.72	0.21523	134.72	134.56	134.78	0					9	4	3	0	0	0	0.026982	1	15674	15674		30.504	6.3009	1	155480	+		12705	19130	10426	10438	13842	13842					0.08085887958964122
FVDSQVRTI	9	Unmodified	_FVDSQVRTI_					0	0	0			REV__ENSG00000130508|ENST00000252804|PXDN	REV__ENSG00000130508|ENST00000252804|PXDN	MSMS	OvCa9_classI_Rep2	2	532.7891235351562	2	532.790381	1063.56621	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.81	1	104.24	103.74	104.74	-0.57639								0	0	0	0.17192	1	9715	9715		45.972	6.7194	1		+		12706	18950	10427	10439	13843	13843					0.03696841471969492
FVDSRGEVY	9	Unmodified	_FVDSRGEVY_					0	0	0			REV__tr|A0A7D6ZV75|A0A7D6ZV75_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_14075PE=4SV=1	REV__tr|A0A7D6ZV75|A0A7D6ZV75_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_14075PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	536.2586059570312	2	536.258914	1070.50327	-1.821	-0.00097655	0.68438	0.00036701	-1.1367	-0.00060954	536.2591895104723	85.72	2.0297	84.229	83.752	85.781	-1.4906					113	39	4	0	0	0	0.19758	3	7453	7441;7453;7464		76.774	9.3404	1	557560	+		12707	32241	10428	10440	13844;13845;13846	13845					-0.029157243160852886
FVDSRGEVY	9	Unmodified	_FVDSRGEVY_					0	0	0			REV__tr|A0A7D6ZV75|A0A7D6ZV75_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_14075PE=4SV=1	REV__tr|A0A7D6ZV75|A0A7D6ZV75_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_14075PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.2592163085938	2	536.258914	1070.50327	-0.86028	-0.00046133	-0.1362	-7.3037E-05	-0.99647	-0.00053437	536.2587818261826	86.964	1.8044	84.337	84.054	85.858	-2.6269					95	35	4	0	0	0	0.21395	1	7381	7381		73.975	10.668	1	1290100	+		12708	32241	10428	10440	13847	13847					-0.029157243160852886
FVDTNLKFL	9	Unmodified	_FVDTNLKFL_					0	0	0			REV__tr|A0A7D6VVG9|A0A7D6VVG9_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11075PE=4SV=1	REV__tr|A0A7D6VVG9|A0A7D6VVG9_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11075PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.287109375	2	548.8055	1095.59645	2.2148	0.0012155	4.1968	0.0023032	6.4116	0.0035187	549.309925053321	100.57	0.16385	100.57	100.44	100.61	0					5	3	2	0	0	0	0.027462	1	11153	11153		44.117	9.9443	1	151910	+		12709	31718	10429	10441	13848	13848					0.052472001371370425
FVEDIEEII	9	Unmodified	_FVEDIEEII_					0	0	0		tr|A0A7D6ZGI3|A0A7D6ZGI3_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22430PE=3SV=1	tr|A0A7D6ZGI3|A0A7D6ZGI3_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22430PE=3SV=1	tr|A0A7D6ZGI3|A0A7D6ZGI3_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22430PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.31640625	2	553.78443	1105.55431	1.1331	0.0006275	3.8375	0.0021252	4.9706	0.0027527	554.288416249759	83.39	0.42488	83.39	83.204	83.629	0					15	9	2	0	0	0	0.027462	1	8665	8665		16.473	0	1	123550			12710	35545	10430	10442	13849	13849					0.005751799381187084
FVEIYRCL	8	Unmodified	_FVEIYRCL_					0	0	0			REV__ENST00000368898.7_1_10:124610050-124615222:-|nuORF	REV__ENST00000368898.7_1_10:124610050-124615222:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.8506469726562	2	521.773145	1041.53174	-1.4156	-0.00073862	-0.027585	-1.4393E-05	-1.4432	-0.00075301	521.7734208486296	28.016	0.39918	28.016	27.791	28.19	0					10	7	2	0	0	0	0.028476	1	871	871		21.96	0	1	27123	+		12711	24928	10431	10443	13850	13850					0.012633020594876143
FVEKALSIRGC	11	Carbamidomethyl (C)	_FVEKALSIRGC(Carbamidomethyl (C))_	FVEKALSIRGC(1)		FVEKALSIRGC(50)		0	1	0			REV__ENSG00000183775|ENST00000512467|KCTD16	REV__ENSG00000183775|ENST00000512467|KCTD16	MULTI-MSMS	OvCa9_classI_Rep2	2	640.3414916992188	2	640.344997	1278.67544	-2.0951	-0.0013416	-3.9081	-0.0025025	-6.0032	-0.0038441	640.3424545682959	51.93	1.532	49.117	48.7	50.232	-2.8129					86	30	4	0	0	0	0.54114	1	3430	3430		50.034	19.465	1	488120	+		12712	22385	10432	10444	13851	13851	258				0.047251040997707605
FVEKSLSQEN	10	Unmodified	_FVEKSLSQEN_					0	0	0		ENSG00000187609|ENST00000340951|EXD3	ENSG00000187609|ENST00000340951|EXD3	ENSG00000187609|ENST00000340951|EXD3	MULTI-MSMS	OvCa99_classI_Rep5	1	590.8004760742188	2	590.79586	1179.57717	2.1595	0.0012758	3.3235	0.0019635	5.483	0.0032393	590.7979145564638	137.53	0.85803	137.53	137.11	137.97	0					30	16	2	0	0	0	0.55359	1	16031	16031		47.657	3.2801	1	314860			12713	8419	10433	10445	13852	13852					-0.005438009444105774
FVELGTQPAT	10	Unmodified	_FVELGTQPAT_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MSMS	OvCa99_classI_Rep5	1	531.77734375	2	531.776939	1061.53933	2.0945	0.0011138	0.41485	0.00022061	2.5093	0.0013344	531.7771016515005	92.885	0.75173	92.885	92.635	93.386	0					52	17	5	0	0	0	0.072307	1	10042	10042		120.87	28.678	1	7545200			12714	5979	10434	10446	13853	13853					0.011017328607522359
FVELGTQPATQ	11	Unmodified	_FVELGTQPATQ_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MSMS	OvCa99_classI_Rep5	1	595.80810546875	2	595.806228	1189.5979	1.8268	0.0010884	0.19653	0.0001171	2.0234	0.0012055	595.8062931021758	91.258	1.8655	91.258	90.938	92.803	0					109	44	5	0	0	0	1.9658E-09	2	9838	9809;9838		201.61	113.92	1	20524000			12715	5979	10435	10447	13854;13855	13855					0.010687894352258809
FVELGTQPATQ	11	Unmodified	_FVELGTQPATQ_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MSMS	OvCa9_classI_Rep4_	4	595.8070678710938	2	595.806228	1189.5979	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.132	1	90.625	90.125	91.125	-2.5072								0	0	0	0.0027737	1	8109	8109		96.665	29.703	1				12716	5979	10435	10447	13856	13856					0.010687894352258809
FVELPDNHS	9	Unmodified	_FVELPDNHS_					0	0	0		nc|ENSG00000054116|O43617-2|TRAPPC3;ENST00000462715.1_1_1:36603336-36605749:-|nuORF;TRAPPC3|p.G159Efs*7|1|0.06|ENSG00000054116|chr1:36137270-36137271|-/TACAGCTAGCAATT|frameshift_variant;ENSG00000054116|ENST00000373166|TRAPPC3	nc|ENSG00000054116|O43617-2|TRAPPC3	nc|ENSG00000054116|O43617-2|TRAPPC3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.8031616210938	2	529.251089	1056.48762	-0.91841	-0.00048607	-1.1425	-0.00060465	-2.0609	-0.0010907	529.2502094151752	105.51	0.54843	103.49	103.35	103.9	-2.0161					15	10	2	0	0	0	0.027462	1	9610	9610		35.618	0	1	33498			12717	1203	10436	10448	13857	13857					-0.03836010833151704
FVEPVSIECGH	11	Unmodified	_FVEPVSIECGH_					0	0	0		ENSG00000132109|ENST00000254436|TRIM21;nc|ENSG00000132109|P19474-2|TRIM21	ENSG00000132109|ENST00000254436|TRIM21	ENSG00000132109|ENST00000254436|TRIM21	MULTI-MSMS	OvCa9_classI_Rep4_	4	608.7896118164062	2	608.786981	1215.55941	3.1879	0.0019407	2.2726	0.0013835	5.4604	0.0033242	608.7882379597531	135.57	1.5724	134.02	133.61	135.18	-1.5436					82	31	4	0	0	0	0.71191	1	13179	13179		25.574	1.0549	1	243270			12718	4109	10437	10449	13858	13858					-0.039748394709477
FVFAPLLML	9	Unmodified	_FVFAPLLML_					0	0	0			REV__ENSG00000169908|ENST00000305366|TM4SF1	REV__ENSG00000169908|ENST00000305366|TM4SF1	MULTI-MSMS	OvCa99_classI_Rep5	1	525.808837890625	2	525.806457	1049.59836	1.2388	0.00065134	4.0188	0.0021131	5.2575	0.0027644	525.8082848546198	118.93	0.61533	118.93	118.58	119.19	0					18	12	2	0	0	0	0.42921	1	13654	13654		49.211	10.189	1	57461	+		12719	21496	10438	10450	13859	13859					0.07554537621376767
FVFCNGLV	8	Unmodified	_FVFCNGLV_					0	0	0		ENSG00000119508|ENST00000395097|NR4A3;nc|ENSG00000119508|Q92570-3|NR4A3	ENSG00000119508|ENST00000395097|NR4A3	ENSG00000119508|ENST00000395097|NR4A3	MULTI-MSMS	OvCa99_classI_Rep5	1	449.72784423828125	2	449.728206	897.44186	1.3218	0.00059443	-3.1196	-0.001403	-1.7978	-0.00080852	449.7266728656778	131.78	1.0733	131.78	131.39	132.46	0					36	22	2	0	0	0	0.71055	1	15325	15325		41.208	0	1	91354			12720	3366	10439	10451	13860	13860					-0.010963275490780688
FVFGEKDTTL	10	Unmodified	_FVFGEKDTTL_					0	0	0		ENST00000521620.5_1_8:30945177-30948455:+|nuORF	ENST00000521620.5_1_8:30945177-30948455:+|nuORF	ENST00000521620.5_1_8:30945177-30948455:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	578.7909545898438	2	578.797872	1155.58119	-7.2267	-0.0041828	-4.1931	-0.002427	-11.42	-0.0066098	578.7954844331674	158.61	3.485	157.34	154.49	157.97	-1.267					113	86	2	0	0	0	0.71192	1	13454	13454		29.15	1.2673	1	22822			12721	13127	10440	10452	13861	13861					0.009622885492944988
FVFGLEKLL	9	Unmodified	_FVFGLEKLL_					0	0	0		tr|A0A7D6ZW89|A0A7D6ZW89_9CLOTFlagellarFliJproteinOS=ClostridiumintestinaleOX=36845GN=fliJPE=3SV=1	tr|A0A7D6ZW89|A0A7D6ZW89_9CLOTFlagellarFliJproteinOS=ClostridiumintestinaleOX=36845GN=fliJPE=3SV=1	tr|A0A7D6ZW89|A0A7D6ZW89_9CLOTFlagellarFliJproteinOS=ClostridiumintestinaleOX=36845GN=fliJPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.7496948242188	2	533.320786	1064.62702	1.5361	0.00081922	-0.36433	-0.00019431	1.1717	0.00062491	533.8216457436366	122.88	0.60374	122.88	122.72	123.33	0					18	12	2	0	0	0	0.027441	1	14152	14152		58.782	12.83	1	77730			12722	35831	10441	10453	13862	13862					0.09728978522184661
FVFGQSSN	8	Unmodified	_FVFGQSSN_					0	0	0		nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153	nc|ENSG00000124789|P49790-2|NUP153	nc|ENSG00000124789|P49790-2|NUP153	MULTI-MSMS	OvCa99_classI_Rep5	1	443.2099304199219	2	443.208692	884.402832	0.46453	0.00020589	0.88281	0.00039127	1.3473	0.00059715	443.20846359457556	66.339	1.0305	66.339	65.984	67.014	0					56	25	3	0	0	0	0.48084	1	6143	6143		79.451	16.145	1	1889200			12723	3681	10442	10454	13863	13863					-0.043993365790925054
FVFHPALAVQ	10	Unmodified	_FVFHPALAVQ_					0	0	0		ENST00000485050.5_1_3:113805105-113805411:+|nuORF	ENST00000485050.5_1_3:113805105-113805411:+|nuORF	ENST00000485050.5_1_3:113805105-113805411:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	564.80908203125	2	564.813659	1127.61277	-3.7232	-0.0021029	-1.8471	-0.0010433	-5.5703	-0.0031462	564.8125164297064	146.26	1.3933	145.3	144.9	146.29	-0.95946					62	27	3	0	0	0	0.73286	1	12321	12321		26.796	0.10319	1	156470			12724	12608	10443	10455	13864	13864					0.054063260938846724
FVFIPRIRF	9	Unmodified	_FVFIPRIRF_					0	0	0			REV__ENSG00000134899|ENST00000652225|ERCC5	REV__ENSG00000134899|ENST00000652225|ERCC5	MULTI-MSMS	OvCa9_classI_Rep3	3	597.85693359375	2	597.860944	1193.70733	-3.7457	-0.0022394	-3.8765	-0.0023176	-7.6223	-0.0045571	597.8583862629882	152.42	1.0346	151.44	151.04	152.08	-0.97299					44	20	3	0	0	0	0.6959	1	12987	12987		19.36	1.995	1	44190	+		12725	19241	10444	10456	13865	13865					0.11822884635876107
FVFKKKLK	8	Unmodified	_FVFKKKLK_					0	0	0		tr|A0A7D6VR58|A0A7D6VR58_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04190PE=4SV=1	tr|A0A7D6VR58|A0A7D6VR58_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04190PE=4SV=1	tr|A0A7D6VR58|A0A7D6VR58_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04190PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.3331909179688	2	519.347138	1036.67972	0.44301	0.00023008	1.3853	0.00071943	1.8283	0.00094951	519.347631575727	72.503	0.34777	69.9	69.62	69.968	-2.6023					10	6	2	0	0	0	0.028476	1	3445	3445		8.2313	6.7665	1	10333			12726	34897	10445	10457	13866	13866					0.16284981375633834
FVFLCVNADQ	10	Unmodified	_FVFLCVNADQ_					0	0	0			REV__nc|ENSG00000005156|P49916-4|LIG3	REV__nc|ENSG00000005156|P49916-4|LIG3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	577.8250122070312	2	578.278792	1154.54303	0.76379	0.00044169	-0.29872	-0.00017274	0.46507	0.00026894	578.278775012474	86.105	0.84703	83.459	83.042	83.889	-2.6463					21	16	2	0	0	0	0.026752	1	7294	7294		27.882	2.3082	1	29755	+		12727	16393	10446	10458	13867	13867					-0.028059206370244283
FVFLFAPLVHR	11	Unmodified	_FVFLFAPLVHR_					0	0	0		nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-2|UNC80;nc|ENSG00000144406|Q8N2C7-4|UNC80;nc|ENSG00000144406|Q8N2C7-3|UNC80;ENST00000478701.1_1_2:210636760-210659540:+|nuORF	nc|ENSG00000144406|Q8N2C7-7|UNC80	nc|ENSG00000144406|Q8N2C7-7|UNC80	MULTI-MSMS	OvCa99_classI_Rep5	1	449.26336669921875	3	449.264164	1344.77066	0.078678	3.5347E-05	-0.5893	-0.00026475	-0.51062	-0.0002294	449.2638015444655	23.817	2.3953	23.817	23.597	25.992	0					115	47	3	0	0	0	0.72466	1	488	488		20.03	0.7678	1	417070			12728	5149	10447	10459	13868	13868					0.11206825353110617
FVFLSLPFL	9	Unmodified	_FVFLSLPFL_					0	0	0			REV__ENST00000421826.6_2_6:27223302-27223911:+|nuORF	REV__ENST00000421826.6_2_6:27223302-27223911:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.2766723632812	2	541.817879	1081.6212	1.7842	0.00096672	-3.7073	-0.0020087	-1.9231	-0.001042	541.8154941750273	117.16	0.74696	117.16	116.95	117.7	0					31	15	3	0	0	0	0.027449	1	13445	13445		40.573	9.0428	1	414360	+		12729	25611	10448	10460	13869	13869					0.08365880010524052
FVFPFFSLL	9	Unmodified	_FVFPFFSLL_					0	0	0		ENST00000379328.7_1_10:8097346-8097625:+|nuORF	ENST00000379328.7_1_10:8097346-8097625:+|nuORF	ENST00000379328.7_1_10:8097346-8097625:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	557.8206787109375	2	558.810054	1115.60555	0.37421	0.00020911	-3.9171	-0.0021889	-3.5429	-0.0019798	559.3080343625286	97.766	0.88145	96.807	96.414	97.296	-0.95856					56	17	4	0	0	0	0.027462	1	8916	8916		11.511	0	1	62089			12730	11123	10449	10461	13870	13870					0.052375934934843826
FVFPGELL	8	Unmodified	_FVFPGELL_					0	0	0		ENSG00000105281|ENST00000542575|SLC1A5	ENSG00000105281|ENST00000542575|SLC1A5	ENSG00000105281|ENST00000542575|SLC1A5	MULTI-MSMS	OvCa99_classI_Rep5	1	461.2587585449219	2	461.257654	920.500755	0.83941	0.00038718	1.5533	0.00071645	2.3927	0.0011036	461.25818992659634	158.3	0.88368	158.3	157.96	158.84	0					37	18	3	0	0	0	0.63104	1	18537	18537		57.453	0	1	105020			12731	2438	10450	10462	13871	13871					0.03732472016918109
FVFPNGTLYI	10	Unmodified	_FVFPNGTLYI_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MULTI-MSMS	OvCa99_classI_Rep5	1	586.3087158203125	2	585.813325	1169.6121	0.94263	0.0005522	1.0487	0.00061436	1.9914	0.0011666	585.8138244748638	155.41	1.0628	155.41	154.98	156.04	0					46	20	3	0	0	0	0.55359	1	18242	18242		47.657	1.7054	1	302930			12732	2201	10451	10463	13872	13872					0.034074866542141535
FVFRWLLN	8	Unmodified	_FVFRWLLN_					0	0	0		ENST00000269122.7_2_17:57744224-57744305:+|nuORF	ENST00000269122.7_2_17:57744224-57744305:+|nuORF	ENST00000269122.7_2_17:57744224-57744305:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	547.8091430664062	2	547.810919	1093.60729	-0.46033	-0.00025218	-3.3916	-0.0018579	-3.8519	-0.0021101	547.8089326720245	61.847	1.2314	61.847	61.585	62.816	0					76	29	4	0	0	0	0.52992	1	5465	5465		74.517	15.735	1	9176500			12733	9981	10452	10464	13873	13873					0.0642264730208808
FVFVKTFDD	9	Unmodified	_FVFVKTFDD_					0	0	0		tr|A0A7D7A2V0|A0A7D7A2V0_9CLOTFlippaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18955PE=4SV=1	tr|A0A7D7A2V0|A0A7D7A2V0_9CLOTFlippaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18955PE=4SV=1	tr|A0A7D7A2V0|A0A7D7A2V0_9CLOTFlippaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18955PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	558.3329467773438	2	559.281857	1116.54916	-0.88383	-0.00049431	-2.9964	-0.0016758	-3.8802	-0.0021701	559.2800952091893	89.628	1.2163	87.548	87.094	88.31	-2.0805					45	23	3	0	0	0	0.027402	1	5581	5581		47.657	3.2801	1	59244			12734	36091	10453	10465	13874	13874					-0.004450791338513227
FVGAGPGDIGL	11	Unmodified	_FVGAGPGDIGL_					0	0	0		tr|A0A553SPU7|A0A553SPU7_NIACIuroporphyrinogen-IIIC-methyltransferaseOS=NialliacirculansOX=1397GN=cobAPE=3SV=1	tr|A0A553SPU7|A0A553SPU7_NIACIuroporphyrinogen-IIIC-methyltransferaseOS=NialliacirculansOX=1397GN=cobAPE=3SV=1	tr|A0A553SPU7|A0A553SPU7_NIACIuroporphyrinogen-IIIC-methyltransferaseOS=NialliacirculansOX=1397GN=cobAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.7242126464844	2	501.766374	1001.5182	0.066764	3.35E-05	-1.4607	-0.00073294	-1.394	-0.00069944	501.7638170542254	71.795	0.20628	71.795	71.629	71.835	0					5	4	2	0	0	0	0.025757	1	6961	6961		71.296	14.862	1	81451			12735	34089	10454	10466	13875	13875					0.01749767551905279
FVGCVLIEPV	10	Unmodified	_FVGCVLIEPV_					0	0	0			REV__L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|322|3|anti-sense	REV__L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|322|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.2807006835938	2	538.296453	1074.57835	2.0974	0.001129	3.3651	0.0018114	5.4625	0.0029405	538.2983264125955	95.641	0.79732	95.641	95.328	96.126	0					50	18	4	0	0	0	0.026871	1	10495	10495		37.159	1.5408	1	3635300	+		12736	28348	10455	10467	13876	13876					0.044047418907666724
FVGLVVPHII	10	Unmodified	_FVGLVVPHII_					0	0	0		tr|A0A553SFB3|A0A553SFB3_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08605PE=3SV=1	tr|A0A553SFB3|A0A553SFB3_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08605PE=3SV=1	tr|A0A553SFB3|A0A553SFB3_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08605PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.7999267578125	2	547.342052	1092.66955	2.8054	0.0015355	-3.9694	-0.0021726	-1.164	-0.00063711	547.8414370403809	102.7	0.33925	102.7	102.42	102.76	0					11	7	2	0	0	0	0.026672	1	11438	11438		35.201	1.6851	1	92191			12737	33018	10456	10468	13877	13877					0.12692373650406807
FVGRKEEI	8	Unmodified	_FVGRKEEI_					0	0	0			REV__ENSG00000134001|ENST00000256383|EIF2S1	REV__ENSG00000134001|ENST00000256383|EIF2S1	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.2913513183594	2	489.274367	976.53418	2.6934	0.0013178	-0.37175	-0.00018189	2.3217	0.0011359	489.2739360580841	90.164	0.29261	90.164	89.977	90.269	0					10	6	2	0	0	0	0.028476	1	9660	9660		19.36	15.95	1	226140	+		12738	19167	10457	10469	13878	13878					0.04497473788796924
FVGRYLLSL	9	Unmodified	_FVGRYLLSL_					0	0	0			REV__ENST00000351293.7_1_10:75574061-75574220:-|nuORF	REV__ENST00000351293.7_1_10:75574061-75574220:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.2928466796875	2	534.316035	1066.61752	1.8765	0.0010026	-0.88032	-0.00047037	0.99618	0.00053227	534.3154100498506	87.609	0.66476	87.609	87.338	88.003	0					22	15	2	0	0	0	0.027462	1	9317	9317		30.504	11.144	1	508500	+		12739	24721	10458	10470	13879	13879					0.08687210236666942
FVGTKEKAL	9	Unmodified	_FVGTKEKAL_					0	0	0			REV__tr|A0A553SJU3|A0A553SJU3_NIACILeucine--tRNAligaseOS=NialliacirculansOX=1397GN=leuSPE=3SV=1	REV__tr|A0A553SJU3|A0A553SJU3_NIACILeucine--tRNAligaseOS=NialliacirculansOX=1397GN=leuSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	495.80230712890625	2	496.792392	991.570232	-0.17894	-8.8898E-05	-0.75017	-0.00037268	-0.92911	-0.00046158	496.79223340595365	114.87	1.1352	114.76	114.21	115.34	-0.11777					28	22	2	0	0	0	0.027462	1	10998	10998		37.159	0	1	41915	+		12740	30044	10459	10471	13880	13880					0.07410930965670559
FVGVGISRIA	10	Unmodified	_FVGVGISRIA_					0	0	0		ENSG00000164256|ENST00000296682|PRDM9;nc|ENSG00000126856|Q9NQW5-1|PRDM7	ENSG00000164256|ENST00000296682|PRDM9	ENSG00000164256|ENST00000296682|PRDM9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.8155212402344	2	509.805834	1017.59712	-0.5246	-0.00026745	0.36095	0.00018402	-0.16365	-8.3431E-05	509.8060316118678	76.671	1.7222	73.733	73.222	74.945	-2.9389					103	35	5	0	0	0	0.026688	1	6110	6110		25.574	0	1	592970			12741	6438	10460	10472	13881	13881					0.08902039576832976
FVHDLVLYL	9	Unmodified	_FVHDLVLYL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000070371|ENST00000427926|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa99_classI_Rep5	1	559.8178100585938	2	559.815867	1117.61718	2.0742	0.0011611	-0.45737	-0.00025604	1.6168	0.0009051	559.8156915922438	133.1	8.2265	133.1	132.6	140.83	0					464	175	6	0	0	0	0.52083	1	15476	15476		40.573	1.5511	1	47573000			12742	4906;1426	10461	10473	13882	13882					0.06307790516780187
FVHDLVLYL	9	Unmodified	_FVHDLVLYL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000070371|ENST00000427926|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa9_classI_Rep3	3	559.8148803710938	2	559.815867	1117.61718	-0.97774	-0.00054735	0.7702	0.00043117	-0.20754	-0.00011618	559.8160584775942	134.25	2.5628	133.13	132.52	135.08	-1.1226					125	51	4	0	0	0	0.44294	1	10840	10840		47.916	8.8941	1	225320			12743	4906;1426	10461	10473	13883	13883					0.06307790516780187
FVHDLVLYL	9	Unmodified	_FVHDLVLYL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000070371|ENST00000427926|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.816162109375	2	559.815867	1117.61718	3.9956	0.0022368	-4.2464	-0.0023772	-0.25077	-0.00014038	559.813249709843	134.7	2.6126	133.16	132.47	135.08	-1.5437					137	52	4	0	0	0	0.53957	1	13021	13021		38.806	2.3594	1	191680			12744	4906;1426	10461	10473	13884	13884					0.06307790516780187
FVHGAWLI	8	Unmodified	_FVHGAWLI_					0	0	0		tr|A0A7D7A3V6|A0A7D7A3V6_9CLOTAPCfamilypermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23060PE=4SV=1	tr|A0A7D7A3V6|A0A7D7A3V6_9CLOTAPCfamilypermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23060PE=4SV=1	tr|A0A7D7A3V6|A0A7D7A3V6_9CLOTAPCfamilypermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23060PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.2882385253906	2	471.763438	941.512323	0.43541	0.00020541	-1.3777	-0.00064995	-0.9423	-0.00044454	471.7627973222817	71.978	0.37895	71.978	71.707	72.086	0					14	8	2	0	0	0	0.028476	1	6964	6964		16.705	0	1	299780			12745	36130	10462	10474	13885	13885					0.03922713830900193
FVHKKRED	8	Unmodified	_FVHKKRED_					0	0	0		ENSG00000154447|ENST00000284637|SH3RF1;ENSG00000172985|ENST00000309415|SH3RF3	ENSG00000154447|ENST00000284637|SH3RF1;ENSG00000172985|ENST00000309415|SH3RF3	ENSG00000154447|ENST00000284637|SH3RF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.7913818359375	2	529.790715	1057.56688	-1.2235	-0.00064822	4.3195	0.0022884	3.096	0.0016402	529.7929598498729	62.785	1.5954	59.327	58.864	60.459	-3.4577					66	32	4	0	0	0	0.028476	1	4467	4467		35.618	22.164	1	634590			12746	5737;7337	10463	10475	13886	13886					0.04039680911682808
FVHLIVALFTW	11	Unmodified	_FVHLIVALFTW_					0	0	0			REV__tr|A0A553SMM2|A0A553SMM2_NIACIMetal-dependenthydrolaseOS=NialliacirculansOX=1397GN=CEQ21_22855PE=4SV=1	REV__tr|A0A553SMM2|A0A553SMM2_NIACIMetal-dependenthydrolaseOS=NialliacirculansOX=1397GN=CEQ21_22855PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	449.2647705078125	3	449.26042	1344.75943	4.3972	0.0019755	3.1281	0.0014054	7.5253	0.0033808	449.26177507793597	28.49	1.1888	25.781	25.592	26.781	-2.7097					32	25	2	0	0	0	0.72466	1	597	597		20.03	0	1	49638	+		12747	30348	10464	10476	13887	13887					0.10084003258975827
FVHLRGSL	8	Unmodified	_FVHLRGSL_					0	0	0			REV__ENST00000290524.8_2_1:151313240-151313396:-|nuORF	REV__ENST00000290524.8_2_1:151313240-151313396:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	464.773681640625	2	464.771794	927.529036	0.010658	4.9535E-06	-0.3484	-0.00016193	-0.33774	-0.00015697	464.77154826400294	52.883	1.5238	52.883	52.566	54.089	0					98	35	4	0	0	0	0.67745	1	4222	4222		47.916	1.9636	1	10355000	+		12748	24152	10465	10477	13888	13888					0.06237214716861672
FVHPKPVSL	9	Unmodified	_FVHPKPVSL_					0	0	0		IFT57-MLXIP|1|fusion;ENST00000541750.1_12:122618368-122620257:+|nuORF;nc|ENSG00000175727|Q9HAP2-5|MLXIP;nc|ENSG00000175727|Q9HAP2-4|MLXIP;nc|ENSG00000175727|Q9HAP2-2|MLXIP;nc|ENSG00000175727|Q9HAP2-3|MLXIP;ENSG00000175727|ENST00000319080|MLXIP	IFT57-MLXIP|1|fusion	IFT57-MLXIP|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	512.303466796875	2	512.302927	1022.5913	-0.30183	-0.00015463	0.65792	0.00033705	0.35609	0.00018242	512.3028902477571	67.641	0.89584	67.641	67.337	68.233	0					49	22	3	0	0	0	0.22621	1	6343	6343		71.877	10.906	1	2052900			12749	14498	10466	10478	13889	13889					0.08090941065177049
FVHPKPVSL	9	Unmodified	_FVHPKPVSL_					0	0	0		IFT57-MLXIP|1|fusion;ENST00000541750.1_12:122618368-122620257:+|nuORF;nc|ENSG00000175727|Q9HAP2-5|MLXIP;nc|ENSG00000175727|Q9HAP2-4|MLXIP;nc|ENSG00000175727|Q9HAP2-2|MLXIP;nc|ENSG00000175727|Q9HAP2-3|MLXIP;ENSG00000175727|ENST00000319080|MLXIP	IFT57-MLXIP|1|fusion	IFT57-MLXIP|1|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	512.302927	1022.5913	-0.045234	-2.3174E-05	-3.7162	-0.0019038	-3.7614	-0.001927	512.3007169548488	70.049	1.1571	67.479	67.165	68.322	-2.5707	-0.11526	-0.0012117	NaN	71.877	40	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43440			12750	14498	10466	10478							0.08090941065177049
FVHPKPVSL	9	Unmodified	_FVHPKPVSL_					0	0	0		IFT57-MLXIP|1|fusion;ENST00000541750.1_12:122618368-122620257:+|nuORF;nc|ENSG00000175727|Q9HAP2-5|MLXIP;nc|ENSG00000175727|Q9HAP2-4|MLXIP;nc|ENSG00000175727|Q9HAP2-2|MLXIP;nc|ENSG00000175727|Q9HAP2-3|MLXIP;ENSG00000175727|ENST00000319080|MLXIP	IFT57-MLXIP|1|fusion	IFT57-MLXIP|1|fusion	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	512.302927	1022.5913	-0.9233	-0.00047301	-3.1008	-0.0015886	-4.0241	-0.0020616	512.3012067783279	71.118	0.73664	67.662	67.486	68.222	-3.4563	0.068242	-0.00058119	NaN	71.877	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71794			12751	14498	10466	10478							0.08090941065177049
FVIAELVNV	9	Unmodified	_FVIAELVNV_					0	0	0		ENSG00000272047|ENST00000607778|GTF2H5	ENSG00000272047|ENST00000607778|GTF2H5	ENSG00000272047|ENST00000607778|GTF2H5	MULTI-MSMS	OvCa99_classI_Rep5	1	502.2945861816406	2	502.294768	1002.57498	0.80674	0.00040522	1.2178	0.00061169	2.0245	0.0010169	502.2951672960333	153.15	0.79503	153.15	152.85	153.64	0					35	15	3	0	0	0	0.44568	1	17931	17931		47.657	6.8792	1	146010			12752	9551	10467	10479	13890	13890					0.07379815108424737
FVIALKSSH	9	Unmodified	_FVIALKSSH_					0	0	0		tr|A0A553SN29|A0A553SN29_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23665PE=4SV=1	tr|A0A553SN29|A0A553SN29_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23665PE=4SV=1	tr|A0A553SN29|A0A553SN29_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23665PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2908935546875	2	501.292559	1000.57057	-1.4695	-0.00073667	-2.6975	-0.0013522	-4.167	-0.0020889	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.6653	1	11081	11081		24.203	5.0992	1	97838			12753	33901	10468	10480	13891	13891					0.07030350685533904
FVIAVMRKF	9	Unmodified	_FVIAVMRKF_					0	0	0			REV__tr|A0A7D6ZX85|A0A7D6ZX85_9CLOTYcxBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10950PE=4SV=1	REV__tr|A0A7D6ZX85|A0A7D6ZX85_9CLOTYcxBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10950PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.3053588867188	2	555.828255	1109.64196	0.0056818	3.1581E-06	-3.8829	-0.0021582	-3.8772	-0.0021551	555.8242302750923	73.459	0.20303	73.459	73.317	73.52	0					7	4	2	0	0	0	0.027462	1	7210	7210		25.45	0	1	124650	+		12754	32320	10469	10481	13892	13892					0.09152147118538778
FVIETARQL	9	Unmodified	_FVIETARQL_					0	0	0		IRF2BP2|p.P414Ffs*4|1|0.12|ENSG00000168264|chr1:234607661-234607662|-/AAAA|frameshift_variant;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2;IRF2BPL|p.E779Kfs*6|1|0.18|ENSG00000119669|chr14:77025459-77025459|G/-|frameshift_variant;ENSG00000119669|ENST00000238647|IRF2BPL	IRF2BP2|p.P414Ffs*4|1|0.12|ENSG00000168264|chr1:234607661-234607662|-/AAAA|frameshift_variant	IRF2BP2|p.P414Ffs*4|1|0.12|ENSG00000168264|chr1:234607661-234607662|-/AAAA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	538.8102416992188	2	538.808574	1075.60259	1.0483	0.00056484	0.76408	0.00041169	1.8124	0.00097653	538.8089835161089	90.919	1.2225	90.919	90.656	91.879	0					96	29	5	0	0	0	0.0070314	1	9751	9751		185.55	49.282	1	39562000			12755	6884	10470	10482	13893	13893					0.06781718368665679
FVIFSSFLI	9	Unmodified	_FVIFSSFLI_					0	0	0		tr|A0A7D6ZXJ8|A0A7D6ZXJ8_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_23240PE=3SV=1	tr|A0A7D6ZXJ8|A0A7D6ZXJ8_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_23240PE=3SV=1	tr|A0A7D6ZXJ8|A0A7D6ZXJ8_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_23240PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.81298828125	2	536.807511	1071.60047	-0.98235	-0.00052733	-3.7815	-0.00203	-4.7639	-0.0025573	536.8054839923756	105.3	0.89777	103.28	103.05	103.95	-2.0161					33	17	3	0	0	0	0.027462	1	9528	9528		31.955	1.6371	1	42051			12756	35883	10471	10483	13894	13894					0.06753289630864856
FVIFSSFLI	9	Unmodified	_FVIFSSFLI_					0	0	0		tr|A0A7D6ZXJ8|A0A7D6ZXJ8_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_23240PE=3SV=1	tr|A0A7D6ZXJ8|A0A7D6ZXJ8_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_23240PE=3SV=1	tr|A0A7D6ZXJ8|A0A7D6ZXJ8_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_23240PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	536.807511	1071.60047	-1.543	-0.00082831	-1.9505	-0.001047	-3.4935	-0.0018754	536.8061268738966	103.85	1.0399	103.28	102.93	103.97	-0.57639	0.018486	0.001518	NaN	31.955	42	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41498			12757	35883	10471	10483							0.06753289630864856
FVIFSSFLI	9	Unmodified	_FVIFSSFLI_					0	0	0		tr|A0A7D6ZXJ8|A0A7D6ZXJ8_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_23240PE=3SV=1	tr|A0A7D6ZXJ8|A0A7D6ZXJ8_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_23240PE=3SV=1	tr|A0A7D6ZXJ8|A0A7D6ZXJ8_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_23240PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	536.807511	1071.60047	1.5046	0.00080767	-5.1096	-0.0027429	-3.605	-0.0019352	536.8044791321082	104.65	1.453	103.22	102.86	104.32	-1.4347	-0.042589	-0.0018736	NaN	31.955	45	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55880			12758	35883	10471	10483							0.06753289630864856
FVIGLLKLG	9	Unmodified	_FVIGLLKLG_					0	0	0		ENSG00000164751|ENST00000357039|PEX2	ENSG00000164751|ENST00000357039|PEX2	ENSG00000164751|ENST00000357039|PEX2	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.31683349609375	2	480.318046	958.621539	4.0104	0.0019263	-4.1147	-0.0019764	-0.10425	-5.0071E-05	480.3158855709112	132.07	1.2133	130.57	130.27	131.48	-1.5014					57	23	4	0	0	0	0.64339	1	12753	12753		26.796	6.3143	1	95732			12759	6483	10472	10484	13895	13895					0.14057299730370687
FVIHKSLK	8	Unmodified	_FVIHKSLK_					0	0	0		nc|ENSG00000185842|Q0VDD8|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	MULTI-MSMS	OvCa9_classI_Rep2	2	486.3050231933594	2	486.30547	970.596387	-1.0237	-0.00049782	0.68907	0.0003351	-0.3346	-0.00016272	486.3057082440577	120.4	1.6293	120.23	119.94	121.57	-0.17138					88	32	4	0	0	0	0.74679	1	11619	11619		28.254	0	1	594410			12760	15218	10473	10485	13896	13896					0.10991244927788557
FVIHNLPIIA	10	Unmodified	_FVIHNLPIIA_					0	0	0		ENSG00000179918|ENST00000478753|SEPHS2	ENSG00000179918|ENST00000478753|SEPHS2	ENSG00000179918|ENST00000478753|SEPHS2	MULTI-MSMS	OvCa9_classI_Rep2	2	568.8468017578125	2	568.844959	1135.67537	-0.94066	-0.00053509	3.7469	0.0021314	2.8063	0.0015963	568.8468987403617	122.03	1.7301	121.81	120.93	122.66	-0.21803					88	34	3	0	0	0	0.64063	1	11775	11775		37.159	0.71236	1	269790			12761	7848	10474	10486	13897	13897					0.11295472162078113
FVIINKAPN	9	Unmodified	_FVIINKAPN_					0	0	0		tr|A0A553SMG8|A0A553SMG8_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22455PE=3SV=1	tr|A0A553SMG8|A0A553SMG8_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22455PE=3SV=1	tr|A0A553SMG8|A0A553SMG8_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22455PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.7633361816406	2	508.300384	1014.58622	-1.4817	-0.00075316	-3.1207	-0.0015863	-4.6024	-0.0023394	508.2986365910014	117.81	0.69542	117.66	117.39	118.08	-0.14755					20	13	2	0	0	0	0.027441	1	11269	11269		45.952	0	1	24459			12762	33831	10475	10487	13898	13898					0.07950637202554844
FVIINKAPN	9	Unmodified	_FVIINKAPN_					0	0	0		tr|A0A553SMG8|A0A553SMG8_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22455PE=3SV=1	tr|A0A553SMG8|A0A553SMG8_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22455PE=3SV=1	tr|A0A553SMG8|A0A553SMG8_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22455PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	508.300384	1014.58622	-0.5007	-0.00025451	-4.0252	-0.002046	-4.5259	-0.0023005	508.29831338491886	118.49	0.34813	117.46	117.24	117.58	-1.0271	-0.075268	-0.0008777	NaN	45.952	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27256			12763	33831	10475	10487							0.07950637202554844
FVIINYLK	8	Unmodified	_FVIINYLK_					0	0	0		tr|A0A553ST82|A0A553ST82_NIACI3-oxoacyl-ACPreductaseOS=NialliacirculansOX=1397GN=CEQ21_04260PE=3SV=1	tr|A0A553ST82|A0A553ST82_NIACI3-oxoacyl-ACPreductaseOS=NialliacirculansOX=1397GN=CEQ21_04260PE=3SV=1	tr|A0A553ST82|A0A553ST82_NIACI3-oxoacyl-ACPreductaseOS=NialliacirculansOX=1397GN=CEQ21_04260PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.25982666015625	2	505.307678	1008.6008	-1.1497	-0.00058098	-3.5961	-0.0018171	-4.7458	-0.0023981	505.3057996216687	81.176	2.2399	78.465	78.003	80.243	-2.7106					110	45	4	0	0	0	0.028476	1	6656	6656		31.955	6.3808	1	576330			12764	34468	10476	10488	13899	13899					0.09684709350710818
FVIIVLILL	9	Unmodified	_FVIIVLILL_					0	0	0			REV__ENSG00000119686|ENST00000238667|FLVCR2	REV__ENSG00000119686|ENST00000238667|FLVCR2	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.81201171875	2	521.867372	1041.72019	-0.96564	-0.00050393	-2.4238	-0.0012649	-3.3894	-0.0017688	521.8659093544608	68.021	0.24477	65.359	65.189	65.433	-2.661					6	4	2	0	0	0	0.027462	1	5337	5337		8.8223	0	1	6833.9	+		12765	18461	10477	10489	13900	13900					0.2009990297542572
FVILLPNHKNQ	11	Unmodified	_FVILLPNHKNQ_					0	0	0			REV__ENSG00000163217|ENST00000295379|BMP10	REV__ENSG00000163217|ENST00000295379|BMP10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	441.78533935546875	3	441.590828	1321.75066	-0.36607	-0.00016165	-3.1579	-0.0013945	-3.524	-0.0015562	441.5893788176055	21.836	0.60646	20.498	20.22	20.826	-1.3386					14	11	2	0	0	0	0.026113	1	196	196		3.026	0	1	23636	+		12766	20817	10478	10490	13901	13901					0.1026502962251925
FVILVNALF	9	Unmodified	_FVILVNALF_					0	0	0			REV__sp|Q6SVZ0|US16_HCMVMProteinUS16OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US16PE=3SV=1	REV__sp|Q6SVZ0|US16_HCMVMProteinUS16OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US16PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.3165283203125	2	518.315503	1034.61645	2.0408	0.0010578	0.66766	0.00034606	2.7085	0.0014039	518.3157944372941	136.58	3.063	135.03	133.61	136.67	-1.5437					148	63	3	0	0	0	0.59983	1	13230	13230		31.955	1.4512	1	141910	+		12767	29441	10479	10491	13902	13902					0.10052995867727077
FVIQALIQV	9	Unmodified	_FVIQALIQV_					0	0	0		ENSG00000204764|ENST00000523189|RANBP17;ENST00000523727.1_1_5:170308890-170323149:+|nuORF;ENST00000519130.5_1_5:170289037-170336799:+|nuORF;ENST00000443155.5_1_5:170288887-170338173:+|nuORF;nc|ENSG00000204764|Q9H2T7-2|RANBP17;RANBP17|p.V862Afs*8|1|0.46|ENSG00000204764|chr5:171241086-171241108|AATGTACTCCAGGCTTTTGTCAA/-|frameshift_variant	ENSG00000204764|ENST00000523189|RANBP17	ENSG00000204764|ENST00000523189|RANBP17	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.7741088867188	2	515.81841	1029.62227	0.26057	0.00013441	-0.29454	-0.00015193	-0.03397	-1.7522E-05	515.8180454905	109.21	1.237	109.04	108.77	110.01	-0.17237					57	24	3	0	0	0	0.02701	1	10276	10276		85.359	0	1	196230			12768	9028	10480	10492	13903	13903					0.10864094379394373
FVIRDKYI	8	Unmodified	_FVIRDKYI_					0	0	0		tr|A0A7D6VQW0|A0A7D6VQW0_9CLOTGlutamyl-tRNAreductaseOS=ClostridiumintestinaleOX=36845GN=hemAPE=3SV=1	tr|A0A7D6VQW0|A0A7D6VQW0_9CLOTGlutamyl-tRNAreductaseOS=ClostridiumintestinaleOX=36845GN=hemAPE=3SV=1	tr|A0A7D6VQW0|A0A7D6VQW0_9CLOTGlutamyl-tRNAreductaseOS=ClostridiumintestinaleOX=36845GN=hemAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.276123046875	2	527.30821	1052.60187	1.4843	0.00078271	0.36148	0.00019061	1.8458	0.00097332	527.3082384061421	83.001	1.0624	83.001	82.694	83.757	0					62	24	5	0	0	0	0.028476	1	8701	8701		51.335	17.163	1	4053700			12769	34873	10481	10493	13904	13904					0.07766923719600527
FVISAIMLIV	10	Unmodified	_FVISAIMLIV_					0	0	0			REV__tr|A0A7D6VPT6|A0A7D6VPT6_9CLOTMBOATfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00250PE=3SV=1	REV__tr|A0A7D6VPT6|A0A7D6VPT6_9CLOTMBOATfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00250PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	553.3375854492188	2	553.338121	1104.66169	-3.3843	-0.0018726	2.8623	0.0015838	-0.52197	-0.00028882	553.3396004097149	154.97	0.78694	154.74	154.48	155.26	-0.22696					36	19	3	0	0	0	0.80532	1	15811	15811		18.324	0	1	38307	+		12770	31275	10482	10494	13905	13905					0.11354478338603258
FVIVKALYA	9	Unmodified	_FVIVKALYA_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.3184814453125	2	512.315503	1022.61645	2.0088	0.0010292	3.9976	0.002048	6.0065	0.0030772	512.3174566461283	137.13	1.1927	135.59	135.23	136.42	-1.5437					51	24	4	0	0	0	0.64339	1	13332	13332		26.796	3.7536	1	57822			12771	8611	10483	10495	13906	13906					0.10604995867731759
FVKEPQGRA	9	Unmodified	_FVKEPQGRA_					0	0	0			REV__ENSG00000122012|ENST00000502798|SV2C	REV__ENSG00000122012|ENST00000502798|SV2C	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.801025390625	2	516.285266	1030.55598	-0.11331	-5.85E-05	-3.0784	-0.0015893	-3.1917	-0.0016478	516.2832933765824	64.875	0.48241	61.39	61.26	61.743	-3.4854					16	9	2	0	0	0	0.027462	1	4660	4660		34.173	3.6689	1	40208	+		12772	18573	10484	10496	13907	13907					0.04192278537379934
FVKESKQKMN	10	Unmodified	_FVKESKQKMN_					0	0	0		ENST00000557141.1_1_14:68265921-68266314:+|nuORF;ENSG00000213551|ENST00000372950|DNAJC9	ENST00000557141.1_1_14:68265921-68266314:+|nuORF	ENST00000557141.1_1_14:68265921-68266314:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	619.8690795898438	2	619.831723	1237.64889	-3.5034	-0.0021715	-3.8442	-0.0023827	-7.3476	-0.0045543	619.8297817006137	152.43	1.2542	151	150.45	151.71	-1.4351					35	26	2	0	0	0	0.026635	1	15034	15034		56.721	34.761	1	15037			12773	9134	10485	10497	13908	13908					0.039574152084696834
FVKGDKKPDRR	11	Unmodified	_FVKGDKKPDRR_					0	0	0			REV__tr|A0A553SJ54|A0A553SJ54_NIACIRibonucleaseROS=NialliacirculansOX=1397GN=rnrPE=3SV=1	REV__tr|A0A553SJ54|A0A553SJ54_NIACIRibonucleaseROS=NialliacirculansOX=1397GN=rnrPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	449.263427734375	3	449.261482	1344.76262	4.3972	0.0019755	0.76285	0.00034272	5.16	0.0023182	449.26177507793597	28.49	1.1888	25.781	25.592	26.781	-2.7097					32	25	2	0	0	0	0.72472	1	606	606		19.263	0	1	49638	+		12774	29966	10486	10498	13909	13909					0.10402646365696455
FVKGKIKSN	9	Unmodified	_FVKGKIKSN_					0	0	0			REV__CON__Q05443	REV__CON__Q05443	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.2978210449219	2	510.813659	1019.61277	-0.48056	-0.00024548	0.95454	0.00048759	0.47398	0.00024212	510.81374006343134	98.957	0.9325	96.632	96.279	97.212	-2.3253					27	17	3	0	0	0	0.027461	1	8867	8867		32.812	7.2384	1	34159	+	+	12775	16196	10487	10499	13910	13910					0.10374326093892705
FVKGKIKSN	9	Unmodified	_FVKGKIKSN_					0	0	0			REV__CON__Q05443	REV__CON__Q05443	MULTI-MATCH	OvCa9_classI_Rep2	2		2	510.813659	1019.61277	-0.10698	-5.4646E-05	0.053024	2.7085E-05	-0.053954	-2.7561E-05	510.8133814075787	97.607	1.177	96.649	96.167	97.344	-0.95856	-0.025997	-0.00039483	NaN	32.812	30	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26820	+	+	12776	16196	10487	10499							0.10374326093892705
FVKGTSTQIN	10	Unmodified	_FVKGTSTQIN_					0	0	0			REV__ENSG00000136381|ENST00000258886|IREB2	REV__ENSG00000136381|ENST00000258886|IREB2	MULTI-MSMS	OvCa99_classI_Rep5	1	547.798095703125	2	547.795663	1093.57677	2.7177	0.0014888	1.0717	0.00058705	3.7894	0.0020758	547.7960579499785	99.056	0.72786	99.056	98.801	99.529	0					52	17	4	0	0	0	0.42082	1	10931	10931		65.465	3.358	1	5845100	+		12777	19383	10488	10500	13911	13911					0.03372824126404339
FVKHEVVNL	9	Unmodified	_FVKHEVVNL_					0	0	0			REV__TRRAP|p.Q3700Cfs*14|1|0.37|ENSG00000196367|chr7:99011251-99011252|-/GTGCGTTAAATCTGTCACCAGAA|frameshift_variant	REV__TRRAP|p.Q3700Cfs*14|1|0.37|ENSG00000196367|chr7:99011251-99011252|-/GTGCGTTAAATCTGTCACCAGAA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.2920532226562	2	542.811116	1083.60768	1.4923	0.00081005	-0.31155	-0.00016911	1.1808	0.00064094	542.8105685658271	148.91	0.88112	148.91	148.72	149.6	0					21	17	2	0	0	0	0.027455	1	17487	17487		19.997	0	1	44446	+		12778	22817	10489	10501	13912	13912					0.06922022231287883
FVKKTGIC	8	Unmodified	_FVKKTGIC_					0	0	0		ENST00000599239.5_1_19:48565437-48599986:-|nuORF;nc|ENSG00000105499|Q9UP65-2|PLA2G4C;ENSG00000105499|ENST00000599921|PLA2G4C;nc|ENSG00000105499|Q9UP65-3|PLA2G4C;PLA2G4C|p.K354M|1|0.03|ENSG00000105499|chr19:48067832-48067832|T/A|missense_variant;ENST00000596510.5_1_19:48556252-48575644:-|nuORF	ENST00000599239.5_1_19:48565437-48599986:-|nuORF	ENST00000599239.5_1_19:48565437-48599986:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	448.2591247558594	2	448.257131	894.499709	0.91254	0.00040905	3.3889	0.0015191	4.3015	0.0019282	448.25856617736815	142.24	1.5311	142.01	141.52	143.05	-0.22696					82	30	4	0	0	0	0.75991	1	14273	14273		21.702	2.3424	1	131560			12779	2465	10490	10502	13913	13913					0.048239343763498255
FVKLIRFL	8	Unmodified	_FVKLIRFL_					0	0	0			REV__ENSG00000175294|ENST00000312106|CATSPER1	REV__ENSG00000175294|ENST00000312106|CATSPER1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.3251953125	2	518.339313	1034.66407	-1.0076	-0.00052226	2.6753	0.0013867	1.6678	0.00086447	518.3414026099639	70.653	0.38557	67.172	66.983	67.369	-3.4812					11	7	2	0	0	0	0.028476	1	5349	5349		38.806	8.3025	1	23056	+		12780	21889	10491	10503	13914	13914					0.14812694858596842
FVKLQVKVPLC	11	Unmodified	_FVKLQVKVPLC_					0	0	0		nc|ENSG00000106336|O75426-4|FBXO24;ENSG00000106336|ENST00000241071|FBXO24;nc|ENSG00000106336|O75426-3|FBXO24	nc|ENSG00000106336|O75426-4|FBXO24	nc|ENSG00000106336|O75426-4|FBXO24	MULTI-MSMS	OvCa9_classI_Rep3	3	425.26275634765625	3	425.261543	1272.7628	1.4408	0.0006127	1.4989	0.00063742	2.9396	0.0012501	425.2621237617474	67.802	1.1518	64.915	64.689	65.841	-2.8873					66	22	4	0	0	0	0.71048	1	2899	2899		26.063	3.5018	1	238150			12781	2543	10492	10504	13915	13915					0.1373293004135121
FVKNQLKIK	9	Unmodified	_FVKNQLKIK_					0	0	0			REV__ENSG00000167671|ENST00000301281|UBXN6;REV__ENST00000587009.5_1_19:4446812-4447750:-|nuORF	REV__ENSG00000167671|ENST00000301281|UBXN6	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.296630859375	2	559.358234	1116.70191	0.64912	0.00036309	-3.5196	-0.0019687	-2.8705	-0.0016057	559.3552355581251	101.83	0.72548	101.83	101.4	102.12	0					23	16	3	0	0	0	0.027462	1	11356	11356		16.473	0	1	371040	+		12782	21297;27870	10493	10505	13916	13916					0.14823161053391232
FVKPDFVKEL	10	Unmodified	_FVKPDFVKEL_					0	0	0			REV__ENSG00000112297|ENST00000633556|CRYBG1	REV__ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	OvCa9_classI_Rep3	3	611.350341796875	2	611.347532	1220.68051	2.8968	0.0017709	2.8129	0.0017197	5.7097	0.0034906	611.3491630908582	125.96	1.25	124.91	124.58	125.83	-1.0525					67	23	4	0	0	0	0.60504	1	9810	9810		41.427	1.3684	1	429160	+		12783	18092	10494	10506	13917	13917					0.07899731234056162
FVKPQQLF	8	Unmodified	_FVKPQQLF_					0	0	0			REV__ENST00000495197.1_1_10:38368986-38369799:-|nuORF	REV__ENST00000495197.1_1_10:38368986-38369799:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	503.7914733886719	2	503.789653	1005.56475	-0.25504	-0.00012849	0.5117	0.00025779	0.25666	0.0001293	503.7897799650993	104.88	0.77431	104.88	104.54	105.31	0					34	17	3	0	0	0	0.65582	1	11768	11768		52.299	0	1	1142900	+		12784	26741	10495	10507	13918	13918					0.062192521738552387
FVKPYQKM	8	Unmodified	_FVKPYQKM_					0	0	0			REV__CNBD1|p.I427Ffs*4|1|0.04|ENSG00000176571|chr8:87353759-87353760|-/CTTT|frameshift_variant	REV__CNBD1|p.I427Ffs*4|1|0.04|ENSG00000176571|chr8:87353759-87353760|-/CTTT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.8217163085938	2	520.783513	1039.55247	1.2068	0.00062849	-0.13101	-6.8225E-05	1.0758	0.00056027	520.7839060358889	135.78	0.42267	135.78	135.6	136.02	0					12	8	2	0	0	0	0.028476	1	15804	15804		31.955	11.958	1	38092	+		12785	16152	10496	10508	13919	13919					0.03427892439140123
FVKRGLALL	9	Unmodified	_FVKRGLALL_					0	0	0			REV__ENST00000405546.7_1_2:242612072-242612480:+|nuORF	REV__ENST00000405546.7_1_2:242612072-242612480:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7692565917969	2	508.834394	1015.65424	1.7728	0.00090208	0.73911	0.00037608	2.512	0.0012782	508.8344722229481	105.93	0.56962	105.93	105.7	106.27	0					18	12	2	0	0	0	0.027456	1	11912	11912		47.916	7.343	1	215940	+		12786	25441	10497	10509	13920	13920					0.1470350685323183
FVKRGNLL	8	Unmodified	_FVKRGNLL_					0	0	0			REV__PABPC3|p.D584*|1|0.32|ENSG00000151846|chr13:25097946-25097947|-/A|frameshift_variant	REV__PABPC3|p.D584*|1|0.32|ENSG00000151846|chr13:25097946-25097947|-/A|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.7857666015625	2	473.795269	945.575986	-0.34	-0.00016109	0.51612	0.00024453	0.17612	8.3445E-05	473.79537137205574	51.692	0.70911	51.692	51.418	52.127	0					30	16	3	0	0	0	0.028476	1	4022	4022		19.36	6.4008	1	635750	+		12787	20259	10498	10510	13921	13921					0.10102074267990702
FVKRGRSGLN	10	Unmodified	_FVKRGRSGLN_					0	0	0			REV__nc|ENSG00000203710|P17927|CR1	REV__nc|ENSG00000203710|P17927|CR1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3289794921875	2	567.330539	1132.64652	-2.3399	-0.0013275	0.99796	0.00056617	-1.3419	-0.00076131	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.72319	1	14602	14602		27.882	3.6795	1	241060	+		12788	23108	10499	10511	13922	13922					0.08550747585695717
FVKRKHRFEIV	11	Unmodified	_FVKRKHRFEIV_					0	0	0			REV__nc|ENSG00000169181|Q6UXU4-3|GSG1L	REV__nc|ENSG00000169181|Q6UXU4-3|GSG1L	MULTI-MSMS	OvCa9_classI_Rep3	3	486.9584655761719	3	486.961256	1457.86194	-7.2825	-0.0035463	2.5142	0.0012243	-4.7683	-0.002322	486.9623381995862	161.08	3.4384	159.71	158.52	161.96	-1.3692					219	70	4	0	0	0	0.72477	1	13990	13990		18.531	4.445	1	133400	+		12789	21439	10500	10512	13923	13923					0.1513208905043939
FVKSESNDD	9	Unmodified	_FVKSESNDD_					0	0	0			REV__FGD6|p.E1390D|1|0.36|ENSG00000180263|chr12:95084584-95084584|C/G|missense_variant	REV__FGD6|p.E1390D|1|0.36|ENSG00000180263|chr12:95084584-95084584|C/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.7352294921875	2	520.730186	1039.44582	0.81339	0.00042355	-0.031903	-1.6613E-05	0.78148	0.00040694	520.7300658983959	91.154	0.43913	91.154	90.976	91.415	0					14	10	2	0	0	0	0.027441	1	9799	9799		40.778	2.9666	1	174980	+		12790	28134	10501	10513	13924	13924					-0.07232611312315385
FVKSQKKLE	9	Unmodified	_FVKSQKKLE_					0	0	0			REV__tr|A0A553SP94|A0A553SP94_NIACIDivIVAdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_25880PE=3SV=1	REV__tr|A0A553SP94|A0A553SP94_NIACIDivIVAdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_25880PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	553.82958984375	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.48324	1	11879	11879		44.117	5.3107	1	308210	+		12791	30515	10502	10514	13925	13925					0.10094577919812764
FVKVIARCC	9	Carbamidomethyl (C)	_FVKVIARC(Carbamidomethyl (C))C_	FVKVIARC(0.838)C(0.162)		FVKVIARC(7.1)C(-7.1)		0	1	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	OvCa9_classI_Rep2	2	548.2950439453125	2	548.293722	1094.57289	-1.4493	-0.00079464	4.468	0.0024498	3.0187	0.0016551	548.2961982412694	34.285	4.3001	31.575	31.119	35.419	-2.7097					197	86	6	0	0	0	0.46377	1	1317	1317		45.952	15.448	2	2359300	+		12792	23506	10503	10515	13926	13926	277				0.029387398273001963
FVKVIARCC	9	Carbamidomethyl (C)	_FVKVIARC(Carbamidomethyl (C))C_	FVKVIARC(0.838)C(0.162)		FVKVIARC(7.1)C(-7.1)		0	1	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.2951049804688	2	548.293722	1094.57289	0.52054	0.00028541	1.8559	0.0010176	2.3764	0.001303	548.2950889669573	33.486	4.8857	30.698	30.11	34.996	-2.7881					278	97	6	0	0	0	0.46377	1	913	913		45.952	13.997	2	7055400	+		12793	23506	10503	10515	13927	13927	277				0.029387398273001963
FVKYLSKR	8	Unmodified	_FVKYLSKR_					0	0	0		ENSG00000134504|ENST00000580059|KCTD1	ENSG00000134504|ENST00000580059|KCTD1	ENSG00000134504|ENST00000580059|KCTD1	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.291015625	2	520.816202	1039.61785	1.5306	0.00079715	-1.8529	-0.00096502	-0.32231	-0.00016786	520.8151077382419	126.07	0.46822	125	124.76	125.23	-1.0715					16	8	3	0	0	0	0.028476	1	9806	9806		34.173	2.2177	1	20367			12794	4302	10504	10516	13928	13928					0.09962629956521596
FVLAKHLIKIK	11	Unmodified	_FVLAKHLIKIK_					0	0	0		EHD4|p.A505V|1|0.17|ENSG00000103966|chr15:41900757-41900757|G/A|missense_variant	EHD4|p.A505V|1|0.17|ENSG00000103966|chr15:41900757-41900757|G/A|missense_variant	EHD4|p.A505V|1|0.17|ENSG00000103966|chr15:41900757-41900757|G/A|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	437.2938537597656	3	437.295464	1308.86456	1.0284	0.00044969	-4.0265	-0.0017608	-2.9982	-0.0013111	437.293668486953	20.848	0.35978	20.848	20.741	21.101	0					13	7	3	0	0	0	0.72511	1	60	60		14.086	1.1285	1	58092			12795	785	10505	10517	13929	13929					0.22248544455396768
FVLAKKTSRFL	11	Unmodified	_FVLAKKTSRFL_					0	0	0		ENST00000381278.3_1_22:43089799-43091637:-|nuORF	ENST00000381278.3_1_22:43089799-43091637:-|nuORF	ENST00000381278.3_1_22:43089799-43091637:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	437.2731628417969	3	437.271207	1308.79179	1.0101	0.00044167	4.2534	0.0018599	5.2635	0.0023016	437.27305961907143	69.199	2.757	66.384	66.063	68.82	-2.8144					169	54	5	0	0	0	0.68059	1	3060	3060		36.318	3.5671	1	1037200			12796	11160	10506	10518	13930	13930					0.14974790661972293
FVLALIDGAP	10	Unmodified	_FVLALIDGAP_					0	0	0			REV__CA9|p.A411P|1|0.05|ENSG00000107159|chr9:35680133-35680133|G/C|missense_variant	REV__CA9|p.A411P|1|0.05|ENSG00000107159|chr9:35680133-35680133|G/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.7690734863281	2	508.294768	1014.57498	-1.2205	-0.00062036	-3.7271	-0.0018945	-4.9476	-0.0025148	508.292418743653	99.884	0.91617	97.559	97.212	98.128	-2.3253					27	17	2	0	0	0	0.026871	1	8892	8892		45.952	20.502	1	54554	+		12797	15723	10507	10519	13931	13931					0.06827815108431423
FVLALIDGAP	10	Unmodified	_FVLALIDGAP_					0	0	0			REV__CA9|p.A411P|1|0.05|ENSG00000107159|chr9:35680133-35680133|G/C|missense_variant	REV__CA9|p.A411P|1|0.05|ENSG00000107159|chr9:35680133-35680133|G/C|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	508.294768	1014.57498	-0.65233	-0.00033158	-4.4469	-0.0022603	-5.0992	-0.0025919	508.2922599555885	98.547	0.89304	97.654	97.313	98.206	-0.89305	0.049961	-6.854E-05	NaN	21.96	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42076	+		12798	15723	10507	10519							0.06827815108431423
FVLALIDGAP	10	Unmodified	_FVLALIDGAP_					0	0	0			REV__CA9|p.A411P|1|0.05|ENSG00000107159|chr9:35680133-35680133|G/C|missense_variant	REV__CA9|p.A411P|1|0.05|ENSG00000107159|chr9:35680133-35680133|G/C|missense_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	508.294768	1014.57498	-0.6144	-0.0003123	-5.8682	-0.0029828	-6.4826	-0.0032951	508.2912221087845	99.284	0.66273	97.599	97.27	97.932	-1.685	-0.0049276	-0.0015134	NaN	21.96	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86486	+		12799	15723	10507	10519							0.06827815108431423
FVLANSSLKTS	11	Unmodified	_FVLANSSLKTS_					0	0	0			REV__ENSG00000109775|ENST00000264689|UFSP2	REV__ENSG00000109775|ENST00000264689|UFSP2	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8233032226562	2	583.824421	1165.63429	-1.0594	-0.00061849	0.95126	0.00055537	-0.10811	-6.3117E-05	583.8248978197831	107.73	1.1962	106.5	106.18	107.38	-1.234					69	22	4	0	0	0	0.56391	1	7676	7676		47.96	5.5634	1	399180	+		12800	17950	10508	10520	13932	13932					0.0580966633197022
FVLDGKAAL	9	Unmodified	_FVLDGKAAL_					0	0	0			REV__ENSG00000163703|ENST00000452070|CRELD1	REV__ENSG00000163703|ENST00000452070|CRELD1	MULTI-MSMS	OvCa9_classI_Rep2	2	467.2742004394531	2	467.273835	932.533118	-0.77902	-0.00036402	0.93693	0.0004378	0.15791	7.3785E-05	467.27407428039476	115.8	1.1385	115.68	115.39	116.53	-0.11777					46	22	3	0	0	0	0.48324	1	11052	11052		44.117	1.7207	1	99886	+		12801	20876	10509	10521	13933	13933					0.06415259419895847
FVLDGKAAL	9	Unmodified	_FVLDGKAAL_					0	0	0			REV__ENSG00000163703|ENST00000452070|CRELD1	REV__ENSG00000163703|ENST00000452070|CRELD1	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	467.273835	932.533118	-0.77902	-0.00036402	0.93693	0.0004378	0.15791	7.3785E-05	467.27407428039476	115.8	1.1385	115.68	115.39	116.53	-0.11777	-0.023034	0.00026778	NaN	44.117	46	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99886	+		12802	20876	10509	10521							0.06415259419895847
FVLDGKAAL	9	Unmodified	_FVLDGKAAL_					0	0	0			REV__ENSG00000163703|ENST00000452070|CRELD1	REV__ENSG00000163703|ENST00000452070|CRELD1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	467.273835	932.533118	-0.6577	-0.00030733	1.0667	0.00049844	0.40899	0.00019111	467.2741932457927	116.77	1.5351	115.73	115.44	116.97	-1.0414	0.031365	0.00038905	NaN	44.117	53	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92980	+		12803	20876	10509	10521							0.06415259419895847
FVLDGKAAL	9	Unmodified	_FVLDGKAAL_					0	0	0			REV__ENSG00000163703|ENST00000452070|CRELD1	REV__ENSG00000163703|ENST00000452070|CRELD1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	467.273835	932.533118	-0.20963	-9.7953E-05	0.05958	2.784E-05	-0.15005	-7.0113E-05	467.2736768629874	117.06	1.1529	115.69	115.4	116.56	-1.3645	-0.0083304	-0.00055215	NaN	44.117	48	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130110	+		12804	20876	10509	10521							0.06415259419895847
FVLGHFILL	9	Unmodified	_FVLGHFILL_					0	0	0		ENSG00000198959|ENST00000361475|TGM2;nc|ENSG00000198959|P21980-3|TGM2;ENST00000474777.1_1_20:36774930-36793648:-|nuORF;nc|ENSG00000198959|P21980-2|TGM2;ENST00000468262.5_1_20:36766485-36793648:-|nuORF	ENSG00000198959|ENST00000361475|TGM2	ENSG00000198959|ENST00000361475|TGM2	MULTI-MSMS	OvCa99_classI_Rep5	1	529.8248901367188	2	529.823495	1057.63244	1.0185	0.00053961	-0.93634	-0.00049609	0.082142	4.3521E-05	529.8228960607835	150.49	2.2581	150.49	150.14	152.4	0					127	45	5	0	0	0	0.22187	1	17623	17623		72.62	9.3137	1	1624000			12805	8918	10510	10522	13934	13934					0.10592702104668206
FVLGYGGR	8	Unmodified	_FVLGYGGR_					0	0	0			REV__ENST00000582377.1_1_17:11998936-12013832:+|nuORF	REV__ENST00000582377.1_1_17:11998936-12013832:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	433.74896240234375	2	434.73742	867.460287	0.5934	0.00025797	1.1486	0.00049935	1.742	0.00075732	434.7379731380371	73.627	0.31714	73.627	73.4	73.717	0					11	7	2	0	0	0	0.028476	1	7228	7228		20.482	0	1	216300	+		12806	27829	10511	10523	13935	13935					0.021255504171449502
FVLHGNSR	8	Unmodified	_FVLHGNSR_					0	0	0			REV__tr|A0A553SSM9|A0A553SSM9_NIACICof-typeHAD-IIBfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_03425PE=4SV=1	REV__tr|A0A553SSM9|A0A553SSM9_NIACICof-typeHAD-IIBfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_03425PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	465.26483154296875	2	465.251226	928.487899	-0.58462	-0.000272	-2.5135	-0.0011694	-3.0981	-0.0014414	465.25177502799545	94.953	0.44894	93.058	92.712	93.16	-1.8956					17	8	3	0	0	0	0.028476	1	6173	6173		16.473	11.386	1	48724	+		12807	30852	10512	10524	13936	13936					0.02079453677379206
FVLIIDWSN	9	Unmodified	_FVLIIDWSN_					0	0	0		nc|ENSG00000146352|Q5SYC1-2|CLVS2;ENSG00000146352|ENST00000275162|CLVS2	nc|ENSG00000146352|Q5SYC1-2|CLVS2	nc|ENSG00000146352|Q5SYC1-2|CLVS2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.80419921875	2	553.797675	1105.5808	-0.85972	-0.00047611	-4.1003	-0.0022707	-4.96	-0.0027468	554.2976593283926	43.124	0.4199	40.116	39.958	40.378	-3.0074					10	7	2	0	0	0	0.027462	1	2063	2063		34.173	0	1	12617			12808	5285	10513	10525	13937	13937					0.03222913620106738
FVLIRPATG	9	Unmodified	_FVLIRPATG_					0	0	0			REV__ENST00000524699.5_1_11:66105107-66105356:-|nuORF	REV__ENST00000524699.5_1_11:66105107-66105356:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	487.292236328125	2	487.295102	972.575651	-3.3803	-0.0016472	-0.73902	-0.00036012	-4.1193	-0.0020073	487.29467626542595	143.85	1.2856	142.86	142.44	143.72	-0.9903					55	25	3	0	0	0	0.67509	1	11978	11978		23.042	5.6775	1	83168	+		12809	27104	10514	10526	13938	13938					0.0882665454812468
FVLIRSCNR	9	Unmodified	_FVLIRSCNR_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OvCa99_classI_Rep5	1	554.3078002929688	2	554.308218	1106.60188	0.34797	0.00019288	-1.8034	-0.00099964	-1.4554	-0.00080676	554.3071583370445	67.315	0.97746	67.315	66.939	67.916	0					71	24	4	0	0	0	0.53483	1	6295	6295		39.253	0.44669	1	4609600			12810	1348	10515	10527	13939	13939					0.052846004479533804
FVLIVPISM	9	Unmodified	_FVLIVPISM_					0	0	0		tr|A0A7D6ZX89|A0A7D6ZX89_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22080PE=4SV=1	tr|A0A7D6ZX89|A0A7D6ZX89_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22080PE=4SV=1	tr|A0A7D6ZX89|A0A7D6ZX89_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22080PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	509.803955078125	2	509.803914	1017.59328	-1.31	-0.00066782	0.8449	0.00043073	-0.46505	-0.00023708	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.64339	2	11013	11002;11013		26.796	2.5934	1	99460			12811	35867	10516	10528	13940;13941	13941					0.08518233758775295
FVLIVPISM	9	Unmodified	_FVLIVPISM_					0	0	0		tr|A0A7D6ZX89|A0A7D6ZX89_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22080PE=4SV=1	tr|A0A7D6ZX89|A0A7D6ZX89_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22080PE=4SV=1	tr|A0A7D6ZX89|A0A7D6ZX89_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22080PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.8033447265625	2	509.803914	1017.59328	2.0238	0.0010317	-2.3362	-0.001191	-0.31239	-0.00015926	509.80258654056354	136.53	4.9049	134.99	133.61	138.51	-1.5437					290	101	5	0	0	0	0.58665	1	13301	13301		33.516	6.7195	1	173450			12812	35867	10516	10528	13942	13942					0.08518233758775295
FVLLRLSAH	9	Unmodified	_FVLLRLSAH_					0	0	0		OR2S2|p.T92Pfs*20|1|0.1|ENSG00000278889|chr9:35957811-35957826|TGAGAAGGAGATGGTT/-|frameshift_variant;ENSG00000278889|ENST00000341959|OR2S2	OR2S2|p.T92Pfs*20|1|0.1|ENSG00000278889|chr9:35957811-35957826|TGAGAAGGAGATGGTT/-|frameshift_variant	OR2S2|p.T92Pfs*20|1|0.1|ENSG00000278889|chr9:35957811-35957826|TGAGAAGGAGATGGTT/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	528.319580078125	2	528.321651	1054.62875	-1.2877	-0.00068031	-2.7436	-0.0014495	-4.0312	-0.0021298	528.3201028484496	56.253	2.2315	53.449	52.879	55.11	-2.804					126	44	4	0	0	0	0.51865	1	3947	3947		40.778	3.6191	1	541320			12813	9595	10517	10529	13943	13943					0.10362032330795046
FVLMNNDEI	9	Unmodified	_FVLMNNDEI_					0	0	0			REV__ENST00000482216.1_1_5:120911545-120911773:-|nuORF	REV__ENST00000482216.1_1_5:120911545-120911773:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.8074340820312	2	547.762975	1093.5114	-0.34688	-0.00019001	-3.6509	-0.0019998	-3.9978	-0.0021898	547.7609941068342	58.002	1.0579	54.658	54.189	55.247	-3.3449					46	20	3	0	0	0	0.027459	1	3854	3854		52.937	6.9847	1	106130	+		12814	25819	10518	10530	13944	13944					-0.031619133909771335
FVLMVYFYW	9	Unmodified	_FVLMVYFYW_					0	0	0		ENST00000373279.5_1_10:71392915-71393320:+|nuORF	ENST00000373279.5_1_10:71392915-71393320:+|nuORF	ENST00000373279.5_1_10:71392915-71393320:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	634.2882690429688	2	634.314646	1266.61474	4.3034	0.0027297	3.9309	0.0024934	8.2343	0.0052231	634.3175529108958	131.94	0.31622	130.44	130.22	130.54	-1.5015					8	5	2	0	0	0	0.027462	1	12674	12674		39.021	6.2091	1	10507			12815	11005	10519	10531	13945	13945					-0.007903812125050536
FVLPELPSV	9	Unmodified	_FVLPELPSV_					0	0	0		nc|ENSG00000182149|P53990-2|IST1;nc|ENSG00000182149|P53990|IST1;ENSG00000182149|ENST00000378799|IST1;nc|ENSG00000182149|P53990-5|IST1;ENST00000536027.1_1_16:71958181-71961713:+|nuORF;ENST00000541180.1_1_16:71958590-71961713:+|nuORF;nc|ENSG00000182149|P53990-6|IST1	nc|ENSG00000182149|P53990-2|IST1	nc|ENSG00000182149|P53990-2|IST1	MULTI-MSMS	OvCa99_classI_Rep5	1	500.7903137207031	2	500.789318	999.564084	0.93782	0.00046965	1.0292	0.00051539	1.967	0.00098504	500.7896685641689	154.35	1.6068	154.35	154.03	155.63	0					73	31	5	0	0	0	0.01029	4	18093	18070;18093;18119;18145		167.82	96.447	1	1008400			12816	7970	10520	10532	13946;13947;13948;13949	13947					0.06428412734157973
FVLRRLWFTYL	11	Unmodified	_FVLRRLWFTYL_					0	0	0		ENST00000535622.5_1_22:32174140-32179938:+|nuORF	ENST00000535622.5_1_22:32174140-32179938:+|nuORF	ENST00000535622.5_1_22:32174140-32179938:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.2783508300781	3	505.294123	1512.86054	3.8588	0.0019498	1.6676	0.00084261	5.5263	0.0027924	505.29431421914296	88.333	0.38048	88.333	88.087	88.467	0					17	8	3	0	0	0	0.026403	1	9367	9367		6.6596	0	1	308800			12817	13380	10521	10533	13950	13950					0.12462454961701042
FVLSALLEFL	10	Unmodified	_FVLSALLEFL_					0	0	0			REV__ENST00000460518.1_1_6:133108648-133118195:-|nuORF	REV__ENST00000460518.1_1_6:133108648-133118195:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.3289794921875	2	576.339175	1150.6638	-0.84088	-0.00048463	-3.0893	-0.0017805	-3.9302	-0.0022651	576.3374088750315	50.635	1.5184	50.635	49.899	51.418	0					52	34	2	0	0	0	0.027084	1	3779	3779		17.365	0	1	419860	+		12818	20015	10522	10534	13951	13951					0.09449230348081983
FVLSMMVLVIL	11	Unmodified	_FVLSMMVLVIL_					0	0	0			REV__nc|ENSG00000204428|Q5SRR4-2|LY6G5C	REV__nc|ENSG00000204428|Q5SRR4-2|LY6G5C	MULTI-SECPEP	OvCa99_classI_Rep5	1	632.861328125	2	632.874013	1263.73347	1.2338	0.00078082	4.0091	0.0025373	5.2429	0.0033181	632.8765250334894	153.2	0.78769	153.2	153	153.78	0					34	15	3	0	0	0	0.025611	1	17929	17929		35.618	4.0885	1	74543	+		12819	23156	10523	10535	13952	13952					0.1121564970083
FVLTAQFVLI	10	Unmodified	_FVLTAQFVLI_					0	0	0		nc|ENSG00000100346|Q9P0X4-3|CACNA1I;nc|ENSG00000100346|Q9P0X4-2|CACNA1I;nc|ENSG00000100346|Q9P0X4-4|CACNA1I;ENSG00000100346|ENST00000402142|CACNA1I	nc|ENSG00000100346|Q9P0X4-3|CACNA1I	nc|ENSG00000100346|Q9P0X4-3|CACNA1I	MULTI-MSMS	OvCa9_classI_Rep2	2	575.84326171875	2	575.847167	1149.67978	-2.8608	-0.0016474	-4.0802	-0.0023496	-6.941	-0.0039969	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.67931	1	14523	14523		32.812	0.85756	1	356230			12820	2051	10524	10536	13953	13953					0.11092936585009738
FVLVLVFLM	9	Unmodified	_FVLVLVFLM_					0	0	0			REV__ENSG00000132911|ENST00000255262|NMUR2	REV__ENSG00000132911|ENST00000255262|NMUR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.3057861328125	2	540.829932	1079.64531	0.75229	0.00040686	2.0764	0.001123	2.8287	0.0015298	540.830243398803	114.18	0.49982	114.18	113.83	114.33	0					15	10	2	0	0	0	0.027462	1	13043	13043		21.702	0	1	74161	+		12821	19113	10525	10537	13954	13954					0.10867397172523852
FVLVSIRGTA	10	Unmodified	_FVLVSIRGTA_					0	0	0			REV__ENST00000488106.1_1_22:29663413-29663494:-|nuORF	REV__ENST00000488106.1_1_22:29663413-29663494:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	531.81689453125	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.83835	1	14051	14051		14.137	1.9303	1	166960	+		12822	23716	10526	10538	13955	13955					0.09498308748334239
FVLWHQSGAL	10	Unmodified	_FVLWHQSGAL_					0	0	0			REV__tr|A0A7D6VSN3|A0A7D6VSN3_9CLOTAscorbate-specificPTSsystemEIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11330PE=3SV=1	REV__tr|A0A7D6VSN3|A0A7D6VSN3_9CLOTAscorbate-specificPTSsystemEIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11330PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	579.9767456054688	2	579.308741	1156.60293	-0.86419	-0.00050063	1.3828	0.00080106	0.5186	0.00030043	579.8116879567204	105.22	0.6469	104.78	104.6	105.25	-0.43642					15	12	2	0	0	0	0.026635	1	9745	9745		47.657	0	1	21455	+		12823	31522	10527	10539	13956	13956					0.030891380885123
FVMGIKQR	8	Unmodified	_FVMGIKQR_					0	0	0			REV__tr|A0A7D6VQH2|A0A7D6VQH2_9CLOTAminoacidABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03205PE=4SV=1	REV__tr|A0A7D6VQH2|A0A7D6VQH2_9CLOTAminoacidABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03205PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	489.7839660644531	2	489.781305	977.548056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.021	1	22.021	21.521	22.521	0								0	0	0	0.30129	1	167	167		21.702	0.7554	1		+		12824	31325	10528	10540	13957	13957					0.05838428016261332
FVMKDALHIL	10	Unmodified	_FVMKDALHIL_					0	0	0		tr|A0A553SUG5|A0A553SUG5_NIACICationtransporterOS=NialliacirculansOX=1397GN=CEQ21_06875PE=4SV=1	tr|A0A553SUG5|A0A553SUG5_NIACICationtransporterOS=NialliacirculansOX=1397GN=CEQ21_06875PE=4SV=1	tr|A0A553SUG5|A0A553SUG5_NIACICationtransporterOS=NialliacirculansOX=1397GN=CEQ21_06875PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	594.26416015625	2	593.836277	1185.658	-0.32289	-0.00019174	-2.4214	-0.0014379	-2.7443	-0.0016296	593.8345900170984	99.606	0.51485	97.28	97.003	97.518	-2.3253					13	9	2	0	0	0	0.026802	1	8855	8855		19.997	0	1	9642.9			12825	34606	10529	10541	13958	13958					0.07259808564776904
FVMKFFNLT	9	Unmodified	_FVMKFFNLT_					0	0	0		ENTPD1|p.L370F|1|0.05|ENSG00000138185|chr10:95860504-95860504|A/T|missense_variant	ENTPD1|p.L370F|1|0.05|ENSG00000138185|chr10:95860504-95860504|A/T|missense_variant	ENTPD1|p.L370F|1|0.05|ENSG00000138185|chr10:95860504-95860504|A/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	573.798828125	2	573.804445	1145.59434	2.2072	0.0012665	-0.46523	-0.00026695	1.7419	0.00099952	573.8043861797065	115.65	0.51637	115.65	115.39	115.91	0					23	10	3	0	0	0	0.35444	1	13221	13221		56.721	8.7615	1	274360			12826	14311	10530	10542	13959	13959					0.02736448127689073
FVMKPPQV	8	Unmodified	_FVMKPPQV_					0	0	0		ENSG00000125977|ENST00000374980|EIF2S2	ENSG00000125977|ENST00000374980|EIF2S2	ENSG00000125977|ENST00000374980|EIF2S2	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.7752380371094	2	473.264956	944.515359	-0.066344	-3.1398E-05	3.5982	0.0017029	3.5319	0.0016715	473.2665325753512	69.476	0.65244	69.476	69.019	69.672	0					20	15	2	0	0	0	0.028476	1	6577	6577		47.916	0	1	758300			12827	3758	10531	10543	13960	13960					0.040882208934021946
FVMPGMVRNL	10	Unmodified	_FVMPGMVRNL_					0	0	0			REV__ENST00000272928.3_1_2:237490010-237490265:+|nuORF	REV__ENST00000272928.3_1_2:237490010-237490265:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	582.3052368164062	2	582.306829	1162.59911	-1.2245	-0.00071306	-1.5181	-0.00088397	-2.7426	-0.001597	582.3058790740574	82.535	1.1714	79.852	79.489	80.66	-2.6829					54	23	3	0	0	0	0.67931	1	6837	6837		32.812	2.2436	1	498540	+		12828	24081	10532	10544	13961	13961					0.02431008998814832
FVMPGMVRNL	10	Unmodified	_FVMPGMVRNL_					0	0	0			REV__ENST00000272928.3_1_2:237490010-237490265:+|nuORF	REV__ENST00000272928.3_1_2:237490010-237490265:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	582.306829	1162.59911	0.18934	0.00011025	-2.2594	-0.0013157	-2.0701	-0.0012054	582.3053392291785	81.646	1.1896	79.997	79.614	80.804	-1.6485	0.16124	-0.00077892	NaN	32.812	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269160	+		12829	24081	10532	10544							0.02431008998814832
FVMPGMVRNL	10	Unmodified	_FVMPGMVRNL_					0	0	0			REV__ENST00000272928.3_1_2:237490010-237490265:+|nuORF	REV__ENST00000272928.3_1_2:237490010-237490265:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	582.306829	1162.59911	-1.9024	-0.0011078	-0.30577	-0.00017805	-2.2082	-0.0012859	582.3066004280429	81.956	1.4967	79.659	79.335	80.831	-2.2963	-0.17682	0.0014963	NaN	32.812	47	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	643340	+		12830	24081	10532	10544							0.02431008998814832
FVMPPFILI	9	Unmodified	_FVMPPFILI_					0	0	0			REV__nc|ENSG00000095981|Q96T55-5|KCNK16	REV__nc|ENSG00000095981|Q96T55-5|KCNK16	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.8280639648438	2	538.814282	1075.61401	2.5959	0.0013987	-1.4922	-0.00080404	1.1037	0.00059467	538.8136943284685	75.461	0.11352	75.461	75.369	75.482	0					4	2	2	0	0	0	0.027462	1	7512	7512		39.021	0.21535	1	294420	+		12831	17300	10533	10545	13962	13962					0.07922824138449869
FVMYGFFVM	9	Unmodified	_FVMYGFFVM_					0	0	0			REV__ENSG00000157703|ENST00000674285|SVOPL	REV__ENSG00000157703|ENST00000674285|SVOPL	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.2760009765625	2	570.766474	1139.5184	-0.56334	-0.00032153	-3.9333	-0.002245	-4.4966	-0.0025665	570.76380412782	39.063	2.1657	39.063	37.298	39.463	0					68	47	2	0	0	0	0.027462	1	2208	2208		14.664	0	1	55909	+		12832	20529	10534	10546	13963	13963					-0.04578272044091136
FVNDIFERI	9	Unmodified	_FVNDIFERI_					0	0	0		ENSG00000276410|ENST00000615966|H2BC3;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000196890|ENST00000693095|H2BC26;ENST00000436555.1_1_1:228651947-228652295:-|nuORF;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;nc|ENSG00000203814|Q5QNW6-2|H2BC18	ENSG00000276410|ENST00000615966|H2BC3;ENSG00000278588|ENST00000377733|H2BC10	ENSG00000278588|ENST00000377733|H2BC10	MULTI-MSMS	OvCa99_classI_Rep5	1	576.807373046875	2	576.806031	1151.59751	1.9694	0.0011359	0.16138	9.3087E-05	2.1308	0.001229	576.8059168171319	120.63	0.85464	120.63	120.44	121.29	0					41	19	3	0	0	0	0.047422	1	13873	13873		120.31	32.61	1	2062600			12833	3666;5948	10535	10547	13964	13964					0.027774145060448063
FVNDIFERI	9	Unmodified	_FVNDIFERI_					0	0	0		ENSG00000276410|ENST00000615966|H2BC3;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000196890|ENST00000693095|H2BC26;ENST00000436555.1_1_1:228651947-228652295:-|nuORF;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;nc|ENSG00000203814|Q5QNW6-2|H2BC18	ENSG00000276410|ENST00000615966|H2BC3;ENSG00000278588|ENST00000377733|H2BC10	ENSG00000278588|ENST00000377733|H2BC10	MULTI-MATCH	OvCa9_classI_Rep2	2		2	576.806031	1151.59751	-1.7525	-0.0010109	-0.4216	-0.00024318	-2.1741	-0.0012541	576.8057298706078	120.65	0.29623	120.45	120.26	120.56	-0.19718	-0.044656	-0.00020258	NaN	120.31	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6341			12834	3666;5948	10535	10547							0.027774145060448063
FVNDIFERI	9	Unmodified	_FVNDIFERI_					0	0	0		ENSG00000276410|ENST00000615966|H2BC3;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000196890|ENST00000693095|H2BC26;ENST00000436555.1_1_1:228651947-228652295:-|nuORF;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;nc|ENSG00000203814|Q5QNW6-2|H2BC18	ENSG00000276410|ENST00000615966|H2BC3;ENSG00000278588|ENST00000377733|H2BC10	ENSG00000278588|ENST00000377733|H2BC10	MULTI-MATCH	OvCa9_classI_Rep3	3		2	576.806031	1151.59751	0.51315	0.00029599	-4.6094	-0.0026587	-4.0963	-0.0023627	576.8025435534081	121.43	0.47117	120.41	120.17	120.64	-1.0271	-0.088731	-0.0050337	NaN	120.31	15	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12843			12835	3666;5948	10535	10547							0.027774145060448063
FVNFKAVQ	8	Unmodified	_FVNFKAVQ_					0	0	0		tr|A0A7D6VZW1|A0A7D6VZW1_9CLOTGlycine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=glyQSPE=3SV=1	tr|A0A7D6VZW1|A0A7D6VZW1_9CLOTGlycine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=glyQSPE=3SV=1	tr|A0A7D6VZW1|A0A7D6VZW1_9CLOTGlycine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=glyQSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	476.3206481933594	2	476.766178	951.517802	0.54984	0.00026215	1.4124	0.0006734	1.9623	0.00093555	476.7665409333276	109.56	0.73551	108.41	108.03	108.77	-1.1444					23	13	2	0	0	0	0.028476	1	7891	7891		26.796	0	1	15175			12836	35366	10536	10548	13965	13965					0.04010392622706149
FVNGLLSKI	9	Unmodified	_FVNGLLSKI_					0	0	0		tr|A0A553SKW5|A0A553SKW5_NIACITranscriptionantiterminationproteinNusBOS=NialliacirculansOX=1397GN=nusBPE=3SV=1	tr|A0A553SKW5|A0A553SKW5_NIACITranscriptionantiterminationproteinNusBOS=NialliacirculansOX=1397GN=nusBPE=3SV=1	tr|A0A553SKW5|A0A553SKW5_NIACITranscriptionantiterminationproteinNusBOS=NialliacirculansOX=1397GN=nusBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	495.80181884765625	2	495.80276	989.590967	0.25835	0.00012809	-0.60387	-0.0002994	-0.34552	-0.00017131	495.8023876292267	130.3	1.0385	129.19	128.78	129.82	-1.1121					34	20	2	0	0	0	0.59259	1	10326	10326		32.812	3.6629	1	54401			12837	33660	10537	10549	13966	13966					0.09575521345323068
FVNIFVALI	9	Unmodified	_FVNIFVALI_					0	0	0		nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B;CACNA1B|p.Y1583Tfs*63|1|0.07|ENSG00000148408|chr9:138073559-138073559|C/-|frameshift_variant;nc|ENSG00000198216|Q15878-2|CACNA1E;nc|ENSG00000198216|Q15878-3|CACNA1E;ENSG00000198216|ENST00000367573|CACNA1E;nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;ENSG00000141837|ENST00000360228|CACNA1A	nc|ENSG00000148408|Q00975-2|CACNA1B;nc|ENSG00000198216|Q15878-2|CACNA1E	nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.3185424804688	2	518.315503	1034.61645	1.2927	0.00067005	1.6545	0.00085753	2.9472	0.0015276	518.3163014324844	138.42	1.5254	136.89	136.44	137.96	-1.5284					73	32	3	0	0	0	0.53957	1	13509	13509		38.806	1.647	1	110380			12838	8797;5410	10538	10550	13967	13967					0.10052995867749814
FVNIGGCGA	9	Unmodified	_FVNIGGCGA_					0	0	0		tr|A0A7D6VR17|A0A7D6VR17_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=celBPE=4SV=1	tr|A0A7D6VR17|A0A7D6VR17_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=celBPE=4SV=1	tr|A0A7D6VR17|A0A7D6VR17_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=celBPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	419.1972351074219	2	419.199813	836.385073	-0.68643	-0.00028775	-3.1691	-0.0013285	-3.8556	-0.0016162	419.1983518447222	49.852	2.9249	47.058	46.686	49.611	-2.794					110	58	3	0	0	0	0.25214	1	3172	3172		68.485	15.133	1	731490			12839	34884	10539	10551	13968	13968					-0.03966375105596853
FVNLLPPLL	9	Unmodified	_FVNLLPPLL_					0	0	0		nc|ENSG00000112242|O00716-2|E2F3;ENSG00000112242|ENST00000346618|E2F3	nc|ENSG00000112242|O00716-2|E2F3	nc|ENSG00000112242|O00716-2|E2F3	MULTI-MSMS	OvCa9_classI_Rep3	3	513.328125	2	513.323328	1024.6321	1.1851	0.00060836	2.3203	0.0011911	3.5055	0.0017994	513.8246530993847	67.449	2.102	64.562	64.137	66.239	-2.8873					146	41	6	0	0	0	0.42057	1	2897	2897		50.025	7.5501	1	2025700			12840	2889	10540	10552	13969	13969					0.12077282384802857
FVNRWLLL	8	Unmodified	_FVNRWLLL_					0	0	0			REV__nc|ENSG00000008869|Q9P2D3-2|HEATR5B	REV__nc|ENSG00000008869|Q9P2D3-2|HEATR5B	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.3040771484375	2	530.818744	1059.62294	2.5553	0.0013564	-4.1068	-0.00218	-1.5514	-0.00082353	530.8162517338604	102.74	0.21537	102.74	102.63	102.85	0					6	4	2	0	0	0	0.028476	1	11448	11448		35.201	15.841	1	139050	+		12841	16462	10541	10553	13970	13970					0.09550933819127749
FVPEKWRVRQ	10	Unmodified	_FVPEKWRVRQ_					0	0	0			REV__ENST00000267116.7_1_12:56634071-56634437:-|nuORF	REV__ENST00000267116.7_1_12:56634071-56634437:-|nuORF	MSMS	OvCa9_classI_Rep2	2	448.9249267578125	3	448.922689	1343.74624	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.476	1	25.767	25.267	26.267	-2.7097								0	0	0	0.14231	1	594	594		20.837	3.004	1		+		12842	24051	10542	10554	13971	13971					0.08811565199584948
FVPGRRLAV	9	Unmodified	_FVPGRRLAV_					0	0	0			REV__ENST00000555762.1_1_14:94517539-94521656:-|nuORF	REV__ENST00000555762.1_1_14:94517539-94521656:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.841064453125	2	507.813993	1013.61343	0.13182	6.694E-05	-2.6102	-0.0013255	-2.4784	-0.0012586	507.8124145720304	111.63	2.2216	110.12	109.37	111.59	-1.5111					60	42	3	0	0	0	0.027462	1	10239	10239		33.516	0	1	78062	+		12843	27547	10543	10555	13972	13972					0.10717165533594653
FVPGRRLAV	9	Unmodified	_FVPGRRLAV_					0	0	0			REV__ENST00000555762.1_1_14:94517539-94521656:-|nuORF	REV__ENST00000555762.1_1_14:94517539-94521656:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	507.813993	1013.61343	1.7013	0.00086393	-1.2207	-0.00061988	0.4806	0.00024405	507.81314110256153	110.1	0.40613	110.1	109.9	110.31	0	-0.0099862	0.001012	NaN	33.516	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168950	+		12844	27547	10543	10555							0.10717165533594653
FVPIFIPVS	9	Unmodified	_FVPIFIPVS_					0	0	0		chr14:94062621-94065779|133|19.53|0.06|8.3|-|2|TE_info:L1PB1,L1PB1_dup11175,L1,LINE,donor,+,94065779,94071367|DDX24,None|15	chr14:94062621-94065779|133|19.53|0.06|8.3|-|2|TE_info:L1PB1,L1PB1_dup11175,L1,LINE,donor,+,94065779,94071367|DDX24,None|15	chr14:94062621-94065779|133|19.53|0.06|8.3|-|2|TE_info:L1PB1,L1PB1_dup11175,L1,LINE,donor,+,94065779,94071367|DDX24,None|15	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.802490234375	2	509.802229	1017.5899	2.0238	0.0010317	0.96983	0.00049442	2.9936	0.0015261	509.80258654056354	136.53	4.9049	134.99	133.61	138.51	-1.5437					290	101	5	0	0	0	0.65476	1	13217	13217		25.45	3.4903	1	173450			12845	354	10544	10556	13973	13973					0.08181306976416636
FVPIIGCLI	9	Unmodified	_FVPIIGCLI_					0	0	0			REV__tr|A0A7D6VY26|A0A7D6VY26_9CLOTAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_11150PE=3SV=1	REV__tr|A0A7D6VY26|A0A7D6VY26_9CLOTAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_11150PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.8095703125	2	487.790807	973.56706	0.16943	8.2647E-05	-0.99598	-0.00048583	-0.82655	-0.00040318	487.79061044329956	129.24	1.8785	128.13	127.3	129.18	-1.1121					56	37	2	0	0	0	0.027462	1	10318	10318		29.842	5.3375	1	17863	+		12846	31806	10545	10557	13974	13974					0.07921964587308139
FVPIYAGLK	9	Unmodified	_FVPIYAGLK_					0	0	0		nc|ENSG00000006757|P41247-2|PNPLA4;ENSG00000006757|ENST00000381042|PNPLA4	nc|ENSG00000006757|P41247-2|PNPLA4	nc|ENSG00000006757|P41247-2|PNPLA4	MULTI-MSMS	OvCa9_classI_Rep2	2	504.29736328125	2	504.299853	1006.58515	-0.69871	-0.00035236	-3.2624	-0.0016452	-3.9611	-0.0019976	504.2979938045065	40.04	1.1397	37.33	37.052	38.192	-2.7097					47	22	3	0	0	0	0.57242	1	2011	2011		35.201	1.0282	1	159290			12847	892	10546	10558	13975	13975					0.08212422833673827
FVPPMLNPII	10	Unmodified	_FVPPMLNPII_					0	0	0		ENSG00000184698|ENST00000642046|OR51M1;ENSG00000167359|ENST00000380211|OR51I1	ENSG00000184698|ENST00000642046|OR51M1	ENSG00000184698|ENST00000642046|OR51M1	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.2847900390625	2	570.827921	1139.64129	2.0023	0.001143	3.3544	0.0019148	5.3568	0.0030578	570.8299401556785	102.91	0.66721	102.91	102.72	103.39	0					25	15	2	0	0	0	0.026519	1	11513	11513		37.159	0.84147	1	1567900			12848	8184	10547	10559	13976	13976					0.07705307678816098
FVPVTYGMEL	10	Unmodified	_FVPVTYGMEL_					0	0	0		tr|A0A553SFQ4|A0A553SFQ4_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09330PE=4SV=1	tr|A0A553SFQ4|A0A553SFQ4_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09330PE=4SV=1	tr|A0A553SFQ4|A0A553SFQ4_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09330PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	578.2899169921875	2	578.291368	1154.56818	-5.4888	-0.0031741	2.5815	0.0014929	-2.9073	-0.0016812	578.2927598597663	159.22	4.1126	158.99	158.53	162.64	-0.22697					262	82	5	0	0	0	0.66721	1	16440	16440		34.173	0.65696	1	1073400			12849	33064	10548	10560	13977	13977					-0.0029186583444698044
FVPVTYGMEL	10	Unmodified	_FVPVTYGMEL_					0	0	0		tr|A0A553SFQ4|A0A553SFQ4_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09330PE=4SV=1	tr|A0A553SFQ4|A0A553SFQ4_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09330PE=4SV=1	tr|A0A553SFQ4|A0A553SFQ4_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09330PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.2896728515625	2	578.291368	1154.56818	-7.0215	-0.0040605	4.0307	0.0023309	-2.9908	-0.0017295	578.2935937226971	160.38	4.1596	158.77	158.05	162.21	-1.6101					391	105	5	0	0	0	0.64063	1	16143	16143		37.159	2.9866	1	1912500			12850	33064	10548	10560	13978	13978					-0.0029186583444698044
FVPYQSPQ	8	Unmodified	_FVPYQSPQ_					0	0	0		ENSG00000167612|ENST00000301190|ANKRD33	ENSG00000167612|ENST00000301190|ANKRD33	ENSG00000167612|ENST00000301190|ANKRD33	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.7315368652344	2	483.239993	964.465432	-0.66686	-0.00032225	-2.6948	-0.0013022	-3.3617	-0.0016245	483.238444655319	53.574	0.51892	53.574	53.214	53.733	0					24	11	3	0	0	0	0.028476	1	4248	4248		30.318	0	1	176860			12851	6813	10549	10561	13979	13979					-0.0182219051090442
FVQGEGPLF	9	Unmodified	_FVQGEGPLF_					0	0	0			REV__ENST00000367137.3_1_1:205780005-205782040:-|nuORF	REV__ENST00000367137.3_1_1:205780005-205782040:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.2614440917969	2	497.255643	992.496732	-1.019	-0.00050671	1.4018	0.00069705	0.38277	0.00019033	497.2556660969264	65.623	0.2403	65.623	65.507	65.748	0					7	5	2	0	0	0	0.027462	1	6029	6029		26.796	0	1	116880	+		12852	24891	10550	10562	13980	13980					0.00018382523182935984
FVQGGSAAWL	10	Unmodified	_FVQGGSAAWL_					0	0	0			REV__nc|ENSG00000104728|O15013-7|ARHGEF10	REV__nc|ENSG00000104728|O15013-7|ARHGEF10	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.3200073242188	2	518.266542	1034.51853	1.3053	0.00067651	0.83112	0.00043074	2.1365	0.0011073	518.2668036038289	126.85	0.27258	126.85	126.69	126.96	0					10	5	2	0	0	0	0.027021	1	14675	14675		29.15	0	1	149370	+		12853	17676	10551	10563	13981	13981					0.002651872717478909
FVQLLQGVF	9	Unmodified	_FVQLLQGVF_					0	0	0		nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ARL8B-ITPR1|4|fusion;ARL8B-ITPR1|5|fusion;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1	nc|ENSG00000150995|Q14643-7|ITPR1	nc|ENSG00000150995|Q14643-7|ITPR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.25439453125	2	525.80276	1049.59097	-0.89296	-0.00046952	-0.37627	-0.00019784	-1.2692	-0.00066736	525.8006341141781	59.703	0.70137	59.703	59.494	60.195	0					14	8	2	0	0	0	0.027441	1	5192	5192		37.159	0	1	421490			12854	5526	10552	10564	13982	13982					0.06815521345333764
FVQLYTER	8	Unmodified	_FVQLYTER_					0	0	0		tr|A0A7D6W402|A0A7D6W402_9CLOTFlotillinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11670PE=4SV=1	tr|A0A7D6W402|A0A7D6W402_9CLOTFlotillinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11670PE=4SV=1	tr|A0A7D6W402|A0A7D6W402_9CLOTFlotillinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11670PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.2806396484375	2	528.279649	1054.54475	0.071185	3.7605E-05	2.8601	0.0015109	2.9313	0.0015485	528.2810213022229	110.49	1.6308	108.88	108.23	109.86	-1.6011					80	30	3	0	0	0	0.66057	1	10205	10205		51.335	1.8939	1	451410			12855	35465	10553	10565	13983	13983					0.0196545644323578
FVRACLRR	8	Unmodified	_FVRACLRR_					0	0	0		nc|ENSG00000164362|O14746-3|TERT;ENSG00000164362|ENST00000310581|TERT;nc|ENSG00000164362|O14746-4|TERT;nc|ENSG00000164362|O14746-2|TERT	nc|ENSG00000164362|O14746-3|TERT	nc|ENSG00000164362|O14746-3|TERT	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.76141357421875	2	510.79782	1019.58109	1.4113	0.00072089	0.27419	0.00014006	1.6855	0.00086094	510.7977322948881	111.74	0.73367	111.74	111.42	112.16	0					35	15	3	0	0	0	0.028476	1	12668	12668		24.203	7.7296	1	257010			12856	6451	10554	10566	13984	13984					0.07208054858961077
FVRALFRKN	9	Unmodified	_FVRALFRKN_					0	0	0			REV__nc|ENSG00000154822|Q9UPR0-2|PLCL2	REV__nc|ENSG00000154822|Q9UPR0-2|PLCL2	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8425903320312	2	575.845825	1149.6771	-2.1491	-0.0012375	-2.6232	-0.0015105	-4.7723	-0.0027481	575.8441928035448	141.47	4.0925	141.24	139.21	143.3	-0.22696					166	82	3	0	0	0	0.61208	1	14176	14176		30.504	5.9844	1	100260	+		12857	20400	10555	10567	13985	13985					0.1082452597070187
FVRALFRKN	9	Unmodified	_FVRALFRKN_					0	0	0			REV__nc|ENSG00000154822|Q9UPR0-2|PLCL2	REV__nc|ENSG00000154822|Q9UPR0-2|PLCL2	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8432006835938	2	575.845825	1149.6771	-4.018	-0.0023138	-0.61131	-0.00035202	-4.6293	-0.0026658	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.6653	1	12193	12193		24.203	0	1	445630	+		12858	20400	10555	10567	13986	13986					0.1082452597070187
FVRGIVRIL	9	Unmodified	_FVRGIVRIL_					0	0	0			REV__nc|ENSG00000114062|Q05086-2|UBE3A	REV__nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3123168945312	2	536.853119	1071.69168	-0.31197	-0.00016748	1.0205	0.00054785	0.70851	0.00038037	536.8538021938534	50.945	0.21635	50.945	50.819	51.036	0					6	4	2	0	0	0	0.027462	1	3898	3898		24.203	0	1	68841	+		12859	18177	10556	10568	13987	13987					0.158705981188632
FVRHHVLL	8	Unmodified	_FVRHHVLL_					0	0	0			REV__tr|A0A553SJW7|A0A553SJW7_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_17685PE=4SV=1	REV__tr|A0A553SJW7|A0A553SJW7_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_17685PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	510.29351806640625	2	510.808711	1019.60287	0.22804	0.00011648	-2.8549	-0.0014583	-2.6269	-0.0013418	510.80679521011245	79.656	0.61072	77.316	76.852	77.463	-2.3399					16	11	2	0	0	0	0.028476	1	4261	4261		29.842	10.482	1	13460	+		12860	30050	10557	10569	13988	13988					0.09385182879179865
FVRHHWVHRRR	11	Unmodified	_FVRHHWVHRRR_					0	0	0		ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;ENST00000528173.5_1_11:46391373-46400221:+|nuORF;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;nc|ENSG00000149091|Q13574-1|DGKZ;nc|ENSG00000157680|O75912|DGKI;ENSG00000157680|ENST00000614521|DGKI;DGKI|p.V482Pfs*14|1|0.17|ENSG00000157680|chr7:137585267-137585328|AGGTTCCAGCGATCTAGCTGTACAACTGTCCCATCTTCCACTTGACACAGGATCTTAGAAAC/-|frameshift_variant	ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-1|DGKZ;nc|ENSG00000157680|O75912|DGKI	ENSG00000149091|ENST00000456247|DGKZ	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.296630859375	3	529.299376	1584.8763	-0.92121	-0.0004876	-3.8016	-0.0020122	-4.7228	-0.0024998	529.2973943446033	21.891	1.5143	20.552	20.27	21.785	-1.3386					128	35	6	0	0	0	0.72568	1	211	211		6.6596	0.65857	1	1347900			12861	5440;15083;5907	10558	10570	13989	13989					0.10725599041938949
FVRLRQQLAQR	11	Unmodified	_FVRLRQQLAQR_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.6168212890625	3	472.28451	1413.8317	-5.3969	-0.0025489	4.0171	0.0018972	-1.3798	-0.00065166	472.28668669654706	159.46	3.529	157.88	156.69	160.22	-1.5858					186	88	4	0	0	0	0.72502	1	15669	15669		15.333	0.63944	1	120390	+		12862	18991	10559	10571	13990	13990					0.14133730385265153
FVRLRRPLL	9	Unmodified	_FVRLRRPLL_					0	0	0			REV__ENST00000498554.5_1_19:2096914-2097955:+|nuORF	REV__ENST00000498554.5_1_19:2096914-2097955:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	585.3499145507812	2	585.385117	1168.75568	-0.17403	-0.00010187	1.7102	0.0010011	1.5362	0.00089927	585.3861247056426	72.856	0.20934	70.456	70.325	70.534	-2.3999					6	3	2	0	0	0	0.027462	1	5920	5920		12.207	0	1	8309	+		12863	26796	10560	10572	13991	13991					0.17805378275807016
FVRMKQLL	8	Unmodified	_FVRMKQLL_					0	0	0		GFOD1|p.I135L|1|0.12|ENSG00000145990|chr6:13365513-13365513|T/G|missense_variant	GFOD1|p.I135L|1|0.12|ENSG00000145990|chr6:13365513-13365513|T/G|missense_variant	GFOD1|p.I135L|1|0.12|ENSG00000145990|chr6:13365513-13365513|T/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.7536010742188	2	517.812605	1033.61066	3.1457	0.0016289	3.6937	0.0019127	6.8394	0.0035415	517.8152638435946	88.122	0.46478	88.122	87.962	88.426	0					19	10	3	0	0	0	0.028476	1	9344	9344		8.8223	0	1	276880			12864	14339	10561	10573	13992	13992					0.09519574084447413
FVRMKQLL	8	Unmodified	_FVRMKQLL_					0	0	0		GFOD1|p.I135L|1|0.12|ENSG00000145990|chr6:13365513-13365513|T/G|missense_variant	GFOD1|p.I135L|1|0.12|ENSG00000145990|chr6:13365513-13365513|T/G|missense_variant	GFOD1|p.I135L|1|0.12|ENSG00000145990|chr6:13365513-13365513|T/G|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	517.812605	1033.61066	1.9596	0.0010147	4.0093	0.0020761	5.969	0.0030908	517.8143139881419	89.334	0.74179	87.966	87.625	88.367	-1.3676	-0.10043	-0.0011149	NaN	13.775	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44842			12865	14339	10561	10573							0.09519574084447413
FVRMKQLL	8	Unmodified	_FVRMKQLL_					0	0	0		GFOD1|p.I135L|1|0.12|ENSG00000145990|chr6:13365513-13365513|T/G|missense_variant	GFOD1|p.I135L|1|0.12|ENSG00000145990|chr6:13365513-13365513|T/G|missense_variant	GFOD1|p.I135L|1|0.12|ENSG00000145990|chr6:13365513-13365513|T/G|missense_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	517.812605	1033.61066	-0.086404	-4.4741E-05	5.9791	0.0030961	5.8927	0.0030513	517.8154484953253	90.192	0.66582	88.112	87.798	88.464	-2.0805	0.04509	0.00092506	NaN	13.775	23	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43308			12866	14339	10561	10573							0.09519574084447413
FVRRGRPAS	9	Unmodified	_FVRRGRPAS_					0	0	0			REV__ENSG00000136856|ENST00000373371|SLC2A8	REV__ENSG00000136856|ENST00000373371|SLC2A8	MSMS	OvCa9_classI_Rep4_	4	523.3045043945312	2	523.304324	1044.5941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.81	1	138.31	137.81	138.81	-1.4952								0	0	0	0.21446	1	13633	13633		24.203	2.2429	1		+		12867	19412	10562	10574	13993	13993					0.0735820924271593
FVRRQLLLFFF	11	Unmodified	_FVRRQLLLFFF_					0	0	0			REV__ENSG00000103335|ENST00000301015|PIEZO1	REV__ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	OvCa9_classI_Rep2	2	495.956787109375	3	495.962485	1484.86563	-4.8163	-0.0023887	-2.9033	-0.0014399	-7.7196	-0.0038286	495.96094978154576	162.14	1.4092	161.91	160.94	162.35	-0.22696					77	27	3	0	0	0	0.72538	1	16474	16474		10.587	1.375	1	83644	+		12868	17612	10563	10575	13994	13994					0.14258758824303186
FVRRQNKP	8	Unmodified	_FVRRQNKP_					0	0	0			REV__ENST00000465634.5_1_11:5687199-5687301:-|nuORF	REV__ENST00000465634.5_1_11:5687199-5687301:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.8076782226562	2	522.8067	1043.59885	-0.24264	-0.00012685	-2.4357	-0.0012734	-2.6783	-0.0014002	522.8054244932734	61.461	0.99871	58.003	57.717	58.715	-3.4577					43	20	3	0	0	0	0.74971	1	4214	4214		26.796	1.222	1	615850	+		12869	19061	10564	10576	13995	13995					0.07879093385486158
FVRRQRDKEKF	11	Unmodified	_FVRRQRDKEKF_					0	0	0			REV__ENSG00000142621|ENST00000688493|FHAD1	REV__ENSG00000142621|ENST00000688493|FHAD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.2442932128906	3	503.61967	1507.83718	-0.86549	-0.00043588	-2.1304	-0.0010729	-2.9959	-0.0015088	503.9530989356726	28.216	0.64727	28.216	28.041	28.688	0					13	12	2	0	0	0	0.026435	1	896	896		14.086	0	1	12464	+		12870	19796	10565	10577	13996	13996					0.10357409177049703
FVRTSQNGLG	10	Unmodified	_FVRTSQNGLG_					0	0	0			REV__ENSG00000183090|ENST00000329798|FREM3	REV__ENSG00000183090|ENST00000329798|FREM3	MULTI-MSMS	OvCa9_classI_Rep4_	4	539.7883911132812	2	539.78563	1077.55671	-0.049296	-2.6609E-05	3.4269	0.0018498	3.3776	0.0018232	539.7875283135534	96.586	2.2733	94.16	93.355	95.628	-2.4256					90	44	4	0	0	0	0.55359	1	8534	8534		47.657	5.2612	1	685970	+		12871	22340	10566	10578	13997	13997					0.02103073186435722
FVRVLCGAKL	10	Unmodified	_FVRVLCGAKL_					0	0	0			REV__MFN1|p.K336Ifs*24|1|0.12|ENSG00000171109|chr3:179375250-179375251|-/TTCTAATGAGGAAATTTTTTAACATTGAAAAT|frameshift_variant	REV__MFN1|p.K336Ifs*24|1|0.12|ENSG00000171109|chr3:179375250-179375251|-/TTCTAATGAGGAAATTTTTTAACATTGAAAAT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	553.3331909179688	2	553.331162	1104.64777	0.91649	0.00050712	3.168	0.001753	4.0845	0.0022601	553.3328003393297	157.32	1.3723	157.32	157	158.37	0					80	27	4	0	0	0	0.65434	1	18500	18500		35.618	5.1146	1	1199000	+		12872	21593	10567	10579	13998	13998					0.09963245630206075
FVRWQFLTLRE	11	Unmodified	_FVRWQFLTLRE_					0	0	0		nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.9431457519531	3	498.945383	1493.81432	0.10419	5.1986E-05	-4.4558	-0.0022232	-4.3516	-0.0021712	498.9431829113185	80.386	6.5904	78.69	78.321	84.911	-1.6951					347	130	6	0	0	0	0.72483	1	6832	6832		17.833	1.3033	1	5429500			12873	4233	10568	10580	13999	13999					0.08716390059612422
FVRWQFLTLRE	11	Unmodified	_FVRWQFLTLRE_					0	0	0		nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.9449462890625	3	498.945383	1493.81432	-0.78365	-0.000391	-3.2889	-0.001641	-4.0725	-0.002032	498.94375426248735	81.253	6.1948	78.93	78.543	84.738	-2.3226					323	125	6	0	0	0	0.70587	3	4549	4542;4549;4561		27.644	8.3812	1	6828400			12874	4233	10568	10580	14000;14001;14002	14001					0.08716390059612422
FVRWQFLTLRE	11	Unmodified	_FVRWQFLTLRE_					0	0	0		nc|ENSG00000133706|Q9P2J5-2|LARS1;ENSG00000133706|ENST00000394434|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	nc|ENSG00000133706|Q9P2J5-2|LARS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.9444580078125	3	498.945383	1493.81432	-1.0023	-0.00050008	-3.2728	-0.0016329	-4.275	-0.002133	498.9437780016878	81.177	4.5443	78.467	78.101	82.645	-2.7106					241	93	6	0	0	0	0.69015	2	6728	6728;6740		33.039	10.478	1	6586900			12875	4233	10568	10580	14003;14004	14003					0.08716390059612422
FVRYLKKF	8	Unmodified	_FVRYLKKF_					0	0	0			REV__tr|A0A7D6VVR5|A0A7D6VVR5_9CLOTNicotinatephosphoribosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06060PE=3SV=1	REV__tr|A0A7D6VVR5|A0A7D6VVR5_9CLOTNicotinatephosphoribosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06060PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.3033447265625	2	550.834394	1099.65424	-1.1626	-0.00064038	3.7207	0.0020495	2.5581	0.0014091	550.8364327729278	44.678	1.4959	41.639	41.362	42.858	-3.0385					59	28	4	0	0	0	0.028476	1	2367	2367		33.516	0	1	310740	+		12876	31733	10569	10581	14005	14005					0.10839506853199055
FVSAAMVI	8	Unmodified	_FVSAAMVI_					0	0	0		tr|A0A553STG7|A0A553STG7_NIACISporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_04955PE=3SV=1	tr|A0A553STG7|A0A553STG7_NIACISporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_04955PE=3SV=1	tr|A0A553STG7|A0A553STG7_NIACISporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_04955PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	419.198974609375	2	419.230582	836.446611	-2.1531	-0.00090266	3.3987	0.0014248	1.2456	0.00052218	419.2313058929618	50.091	0.93708	46.95	46.507	47.444	-3.1416					25	17	2	0	0	0	0.028476	1	2851	2851		46.766	19.97	1	15558			12877	34486	10570	10582	14006	14006					0.021845565936814637
FVSAIKKKPI	10	Unmodified	_FVSAIKKKPI_					0	0	0			REV__nc|ENSG00000160305|Q14689-5|DIP2A	REV__nc|ENSG00000160305|Q14689-5|DIP2A	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.8883056640625	2	565.868434	1129.72232	2.1844	0.0012361	-0.52221	-0.0002955	1.6622	0.00094059	565.8682100933167	118.37	0.23448	118.37	118.2	118.44	0					5	4	2	0	0	0	0.027056	1	13555	13555		35.618	8.9254	1	22314	+		12878	20655	10571	10583	14007	14007					0.16264331713227875
FVSETESRGSE	11	Unmodified	_FVSETESRGSE_					0	0	0		nc|ENSG00000171560|P02671|FGA;ENSG00000171560|ENST00000403106|FGA	nc|ENSG00000171560|P02671|FGA	nc|ENSG00000171560|P02671|FGA	MULTI-MSMS	OvCa99_classI_Rep5	1	614.278076171875	2	614.278032	1226.54151	-0.19287	-0.00011847	0.84684	0.0005202	0.65397	0.00040172	614.2787341413565	41.081	0.66837	41.081	40.881	41.55	0					27	14	3	0	0	0	0.32052	1	2546	2546		66.92	13.984	1	334130			12879	7213	10572	10584	14008	14008					-0.06269883192089765
FVSGFLLFRSL	11	Unmodified	_FVSGFLLFRSL_					0	0	0		ENSG00000105518|ENST00000354882|TMEM205	ENSG00000105518|ENST00000354882|TMEM205	ENSG00000105518|ENST00000354882|TMEM205	MULTI-MSMS	OvCa9_classI_Rep2	2	429.25042724609375	3	429.248291	1284.72304	1.0169	0.00043652	4.3404	0.0018631	5.3573	0.0022996	429.25019541218927	90.872	2.087	89.637	89.291	91.378	-1.2355					137	39	6	0	0	0	0.57194	1	8043	8043		47.228	2.2055	1	2558200			12880	2467	10573	10585	14009	14009					0.09207126362298368
FVSGIILLAF	10	Unmodified	_FVSGIILLAF_					0	0	0		tr|A0A553SLI4|A0A553SLI4_NIACIProbablemultidrugresistanceproteinNorMOS=NialliacirculansOX=1397GN=CEQ21_20695PE=3SV=1	tr|A0A553SLI4|A0A553SLI4_NIACIProbablemultidrugresistanceproteinNorMOS=NialliacirculansOX=1397GN=CEQ21_20695PE=3SV=1	tr|A0A553SLI4|A0A553SLI4_NIACIProbablemultidrugresistanceproteinNorMOS=NialliacirculansOX=1397GN=CEQ21_20695PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3295288085938	2	540.328611	1078.64267	1.7006	0.00091891	0.87076	0.0004705	2.5714	0.0013894	540.3288859483814	136.43	2.6624	134.89	133.81	136.47	-1.5437					113	54	3	0	0	0	0.71192	1	13253	13253		29.15	4.9468	1	60228			12881	33726	10574	10586	14010	14010					0.1064926503922834
FVSGIILLAF	10	Unmodified	_FVSGIILLAF_					0	0	0		tr|A0A553SLI4|A0A553SLI4_NIACIProbablemultidrugresistanceproteinNorMOS=NialliacirculansOX=1397GN=CEQ21_20695PE=3SV=1	tr|A0A553SLI4|A0A553SLI4_NIACIProbablemultidrugresistanceproteinNorMOS=NialliacirculansOX=1397GN=CEQ21_20695PE=3SV=1	tr|A0A553SLI4|A0A553SLI4_NIACIProbablemultidrugresistanceproteinNorMOS=NialliacirculansOX=1397GN=CEQ21_20695PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	540.328611	1078.64267	-0.70253	-0.0003796	3.3465	0.0018082	2.644	0.0014286	540.330240564602	134.86	0.58698	134.63	134.34	134.93	-0.22696	-0.16241	0.0020967	NaN	29.15	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37956			12882	33726	10574	10586							0.1064926503922834
FVSGIILLAF	10	Unmodified	_FVSGIILLAF_					0	0	0		tr|A0A553SLI4|A0A553SLI4_NIACIProbablemultidrugresistanceproteinNorMOS=NialliacirculansOX=1397GN=CEQ21_20695PE=3SV=1	tr|A0A553SLI4|A0A553SLI4_NIACIProbablemultidrugresistanceproteinNorMOS=NialliacirculansOX=1397GN=CEQ21_20695PE=3SV=1	tr|A0A553SLI4|A0A553SLI4_NIACIProbablemultidrugresistanceproteinNorMOS=NialliacirculansOX=1397GN=CEQ21_20695PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	540.328611	1078.64267	-0.34869	-0.00018841	2.3042	0.001245	1.9555	0.0010566	540.3296401018649	135.96	1.3282	134.86	134.31	135.64	-1.1076	0.065601	0.00097036	NaN	29.15	39	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9855.7			12883	33726	10574	10586							0.1064926503922834
FVSGRSEAL	9	Unmodified	_FVSGRSEAL_					0	0	0			REV__ENSG00000167291|ENST00000310924|TBC1D16	REV__ENSG00000167291|ENST00000310924|TBC1D16	MULTI-MSMS	OvCa9_classI_Rep4_	4	483.2564697265625	2	483.256174	964.497795	-0.22732	-0.00010985	-1.6311	-0.00078824	-1.8584	-0.00089809	483.25502499166134	63.846	1.2591	60.371	60.109	61.368	-3.475					58	25	3	0	0	0	0.22961	1	4522	4522		71.296	2.5089	1	1238200	+		12884	21268	10575	10587	14011	14011					0.01412596892100737
FVSGRSEAL	9	Unmodified	_FVSGRSEAL_					0	0	0			REV__ENSG00000167291|ENST00000310924|TBC1D16	REV__ENSG00000167291|ENST00000310924|TBC1D16	MULTI-MATCH	OvCa99_classI_Rep5	1		2	483.256174	964.497795	-0.29228	-0.00014125	4.347	0.0021007	4.0547	0.0019595	483.2580046155226	60.115	0.11437	60.115	60.039	60.153	0	-0.18444	0.0034241	NaN	71.296	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53227	+		12885	21268	10575	10587							0.01412596892100737
FVSGRSEAL	9	Unmodified	_FVSGRSEAL_					0	0	0			REV__ENSG00000167291|ENST00000310924|TBC1D16	REV__ENSG00000167291|ENST00000310924|TBC1D16	MULTI-MATCH	OvCa9_classI_Rep2	2		2	483.256174	964.497795	-1.9179	-0.00092685	1.3507	0.00065271	-0.56726	-0.00027413	483.25681748887416	63.156	1.7183	60.412	59.548	61.266	-2.7444	0.11244	0.0005281	NaN	71.296	68	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206240	+		12886	21268	10575	10587							0.01412596892100737
FVSGVIVKI	9	Unmodified	_FVSGVIVKI_					0	0	0		nc|ENSG00000174720|Q4G0J3-2|LARP7;ENSG00000174720|ENST00000344442|LARP7;nc|ENSG00000174720|Q4G0J3-3|LARP7	nc|ENSG00000174720|Q4G0J3-2|LARP7	nc|ENSG00000174720|Q4G0J3-2|LARP7	MULTI-MSMS	OvCa99_classI_Rep5	1	481.3082580566406	2	481.307678	960.600803	2.1498	0.0010347	0.23409	0.00011267	2.3839	0.0011474	481.3076614412365	106.08	1.0589	106.08	105.75	106.81	0					55	23	3	0	0	0	0.019133	1	11915	11915		148.04	45.27	1	1958900			12887	7485	10576	10588	14012	14012					0.11892709350718178
FVSKRFMV	8	Unmodified	_FVSKRFMV_					0	0	0		ENST00000478160.1_1_3:160952958-160953009:+|nuORF	ENST00000478160.1_1_3:160952958-160953009:+|nuORF	ENST00000478160.1_1_3:160952958-160953009:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.27166748046875	2	507.28368	1012.55281	2.598	0.0013179	3.4716	0.0017611	6.0696	0.003079	507.2849905746213	75.358	0.51263	75.358	75.168	75.68	0					16	11	2	0	0	0	0.028476	1	7546	7546		19.36	0	1	537560			12888	12487	10577	10589	14013	14013					0.04703312159028883
FVSNLPYSMQ	10	Unmodified	_FVSNLPYSMQ_					0	0	0		nc|ENSG00000075856|Q15020-4|SART3;ENSG00000075856|ENST00000546815|SART3	nc|ENSG00000075856|Q15020-4|SART3	nc|ENSG00000075856|Q15020-4|SART3	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.83642578125	2	593.284074	1184.5536	2.4231	0.0014376	2.5308	0.0015015	4.9539	0.0029391	593.2861744442124	113.19	0.44597	113.19	112.97	113.42	0					18	9	3	0	0	0	0.026734	1	12911	12911		47.657	5.2612	1	134510			12889	1544	10578	10590	14014	14014					-0.03129937982589581
FVSPEGGFF	9	Unmodified	_FVSPEGGFF_					0	0	0		tr|A0A553SN18|A0A553SN18_NIACIPLP-dependentaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_23440PE=4SV=1	tr|A0A553SN18|A0A553SN18_NIACIPLP-dependentaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_23440PE=4SV=1	tr|A0A553SN18|A0A553SN18_NIACIPLP-dependentaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_23440PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	493.7350158691406	2	493.734543	985.454533	1.3699	0.00067635	0.39442	0.00019474	1.7643	0.00087109	493.7345022768632	130.31	0.81033	130.31	130.01	130.82	0					33	16	3	0	0	0	0.44294	1	15120	15120		47.916	1.9636	1	160030			12890	33897	10579	10591	14015	14015					-0.03877592885169179
FVSRFRAR	8	Unmodified	_FVSRFRAR_					0	0	0		chrX:118419411-118432781|190|10.3|0.42|4.6|+|0|TE_info:L1PB1,L1PB1_dup8380,L1,LINE,donor,-,118415804,118419411|None,WDR44|24	chrX:118419411-118432781|190|10.3|0.42|4.6|+|0|TE_info:L1PB1,L1PB1_dup8380,L1,LINE,donor,-,118415804,118419411|None,WDR44|24	chrX:118419411-118432781|190|10.3|0.42|4.6|+|0|TE_info:L1PB1,L1PB1_dup8380,L1,LINE,donor,-,118415804,118419411|None,WDR44|24	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.7723388671875	2	519.801417	1037.58828	-1.0969	-0.00057019	0.34407	0.00017885	-0.75285	-0.00039134	519.8013746772552	55.495	1.1624	52.2	52.008	53.171	-3.2944					26	21	2	0	0	0	0.028476	1	3553	3553		44.117	0	1	84463			12891	561	10580	10592	14016	14016					0.07099110731041947
FVSRIVRRL	9	Unmodified	_FVSRIVRRL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	573.3687744140625	2	573.366924	1144.7193	-0.0092487	-5.3029E-06	-0.62958	-0.00036098	-0.63882	-0.00036628	573.3665679624819	57.754	3.5482	57.754	57.48	61.028	0					220	87	5	0	0	0	0.12515	1	4852	4852		90.37	23.941	1	19298000			12892	6293	10581	10593	14017	14017					0.15272501379081405
FVSTPDEHPGG	11	Unmodified	_FVSTPDEHPGG_					0	0	0		ENSG00000182253|ENST00000336292|SYNM;nc|ENSG00000182253|O15061-2|SYNM;SYNM|p.V1009Afs*14|1|0.19|ENSG00000182253|chr15:99131385-99131386|-/CTCGGTGTACGGGCAGATCCACA|frameshift_variant	ENSG00000182253|ENST00000336292|SYNM	ENSG00000182253|ENST00000336292|SYNM	MULTI-SECPEP	OvCa9_classI_Rep4_	4	570.7805786132812	2	571.759278	1141.504	-0.48732	-0.00027863	1.145	0.00065468	0.65771	0.00037605	571.7591737642582	94.043	0.82337	91.536	91.348	92.171	-2.5072					28	16	2	0	0	0	0.025853	1	8208	8208		27.882	13.017	1	98337			12893	7984	10582	10594	14018	14018					-0.06108929667038865
FVSYGGHA	8	Unmodified	_FVSYGGHA_					0	0	0			REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF	REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	419.1983337402344	2	419.198128	836.381703	-0.68643	-0.00028775	0.85141	0.00035691	0.16498	6.9159E-05	419.1983518447222	49.852	2.9249	47.058	46.686	49.611	-2.794					110	58	3	0	0	0	0.60486	1	3183	3183		62.978	12.954	1	731490	+		12894	18012	10583	10595	14019	14019					-0.04303301887944144
FVSYGGHA	8	Unmodified	_FVSYGGHA_					0	0	0			REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF	REV__ENST00000547250.5_1_12:57033951-57037708:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	419.19903564453125	2	419.198128	836.381703	-2.054	-0.00086101	1.8653	0.00078193	-0.18866	-7.9086E-05	419.1988772983762	49.988	4.5261	46.846	46.558	51.084	-3.1416					203	88	5	0	0	0	0.52992	4	2863	2840;2851;2863;2925		74.517	7.4281	1	4398500	+		12895	18012	10583	10595	14020;14021;14022;14023	14022					-0.04303301887944144
FVSYLHTEL	9	Unmodified	_FVSYLHTEL_					0	0	0			REV__ENST00000230122.3_1_6:109783804-109784026:-|nuORF	REV__ENST00000230122.3_1_6:109783804-109784026:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	555.3258056640625	2	554.787307	1107.56006	0.17409	9.6585E-05	-4.3811	-0.0024306	-4.207	-0.002334	554.7849304105614	83.603	1.3089	82.004	81.64	82.948	-1.5989					33	23	2	0	0	0	0.027448	1	7266	7266		63.306	19.68	1	56651	+		12896	23788	10584	10596	14024	14024					0.010583232404314913
FVSYLHTEL	9	Unmodified	_FVSYLHTEL_					0	0	0			REV__ENST00000230122.3_1_6:109783804-109784026:-|nuORF	REV__ENST00000230122.3_1_6:109783804-109784026:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	554.787307	1107.56006	-1.4832	-0.00082286	-2.5162	-0.0013959	-3.9994	-0.0022188	554.7858977868867	84.126	1.0484	81.865	81.655	82.704	-2.261	-0.13388	0.0013693	NaN	63.306	32	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89153	+		12897	23788	10584	10596							0.010583232404314913
FVSYLHTEL	9	Unmodified	_FVSYLHTEL_					0	0	0			REV__ENST00000230122.3_1_6:109783804-109784026:-|nuORF	REV__ENST00000230122.3_1_6:109783804-109784026:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	554.787307	1107.56006	1.3793	0.00076522	-6.0399	-0.0033508	-4.6606	-0.0025856	554.7840356877578	84.777	0.67914	82.127	81.927	82.606	-2.6504	0.12861	-0.0025405	NaN	63.306	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88848	+		12898	23788	10584	10596							0.010583232404314913
FVTHIGLVRVP	11	Unmodified	_FVTHIGLVRVP_					0	0	0			REV__ENST00000430298.6_1_19:12222513-12222840:+|nuORF	REV__ENST00000430298.6_1_19:12222513-12222840:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	619.3729858398438	2	619.374415	1236.73428	-5.649	-0.0034989	1.4512	0.00089884	-4.1978	-0.0026	619.3752552398936	159.28	1.2139	158.02	157.66	158.88	-1.267					65	23	4	0	0	0	0.72466	1	13757	13757		19.997	5.8596	1	112740	+		12899	25711	10585	10597	14025	14025					0.1253794845642915
FVTIKKKK	8	Unmodified	_FVTIKKKK_					0	0	0			REV__nc|ENSG00000118777|Q9UNQ0-2|ABCG2	REV__nc|ENSG00000118777|Q9UNQ0-2|ABCG2	MULTI-SECPEP	OvCa9_classI_Rep3	3	497.2842102050781	2	496.33677	990.658987	0.82397	0.00040897	-0.57868	-0.00028722	0.24529	0.00012175	496.3362875117124	127.93	0.65056	126.83	126.62	127.27	-1.0933					21	12	2	0	0	0	0.028476	1	10082	10082		9.4706	1.2393	1	14117	+		12900	18415	10586	10598	14026	14026					0.16328390995988684
FVTITDLW	8	Unmodified	_FVTITDLW_					0	0	0			REV__SLITRK2|p.N294Tfs*14|1|0.12|ENSG00000185985|chrX:145823304-145823304|C/-|frameshift_variant	REV__SLITRK2|p.N294Tfs*14|1|0.12|ENSG00000185985|chrX:145823304-145823304|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	497.8409118652344	2	497.765843	993.517133	-0.17452	-8.6871E-05	-4.3835	-0.002182	-4.558	-0.0022688	497.7635119893678	97.7	1.0282	96.742	96.365	97.393	-0.95857					33	20	3	0	0	0	0.028476	1	8899	8899		19.36	0	1	41377	+		12901	22551	10587	10599	14027	14027					0.020115531830015243
FVTKGKYSK	9	Unmodified	_FVTKGKYSK_					0	0	0			REV__tr|A0A7D6VSV0|A0A7D6VSV0_9CLOTRedoxindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14265PE=4SV=1	REV__tr|A0A7D6VSV0|A0A7D6VSV0_9CLOTRedoxindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14265PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.31494140625	2	529.305667	1056.59678	-0.67454	-0.00035704	-3.3623	-0.0017797	-4.0369	-0.0021367	529.3036037559309	75.351	0.96867	72.121	71.867	72.836	-3.2308					41	19	3	0	0	0	0.027459	1	5947	5947		36.447	13.404	1	108040	+		12902	31541	10588	10600	14028	14028					0.0707461985698501
FVTLEKDPQ	9	Unmodified	_FVTLEKDPQ_					0	0	0		UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.302734375	2	538.784764	1075.55498	0.2743	0.00014779	3.8257	0.0020612	4.1	0.002209	538.7865261195608	90.589	0.81428	88.508	88.158	88.973	-2.0805					23	15	2	0	0	0	0.027433	1	5624	5624		51.335	1.8939	1	39815			12903	3833	10589	10601	14029	14029					0.02022019377795914
FVTLGITT	8	Unmodified	_FVTLGITT_					0	0	0			REV__nc|ENSG00000175164|P16442|ABO	REV__nc|ENSG00000175164|P16442|ABO	MULTI-MSMS	OvCa9_classI_Rep3	3	426.24609375	2	426.247286	850.48002	-1.1759	-0.00050123	-1.8651	-0.00079498	-3.041	-0.0012962	426.2464135300909	139.12	1.5749	138.06	137.54	139.11	-1.0595					80	31	4	0	0	0	0.74679	1	11424	11424		28.254	2.8041	1	422340	+		12904	21874	10590	10602	14030	14030					0.04879881637236849
FVTLVTITVK	10	Unmodified	_FVTLVTITVK_					0	0	0			REV__nc|ENSG00000173585|P51686-2|CCR9	REV__nc|ENSG00000173585|P51686-2|CCR9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	560.7916259765625	2	560.85245	1119.69035	0.3201	0.00017953	-3.1372	-0.0017595	-2.8171	-0.00158	560.8505947934856	65.791	1.0185	62.306	61.987	63.005	-3.4854					38	20	3	0	0	0	0.027088	1	4723	4723		26.693	11.051	1	107060	+		12905	21788	10591	10603	14031	14031					0.13528919239411152
FVTLVTITVK	10	Unmodified	_FVTLVTITVK_					0	0	0			REV__nc|ENSG00000173585|P51686-2|CCR9	REV__nc|ENSG00000173585|P51686-2|CCR9	MULTI-MATCH	OvCa9_classI_Rep3	3		2	560.85245	1119.69035	0.89432	0.00050158	-3.3021	-0.001852	-2.4078	-0.0013504	560.850507772242	65.088	0.70934	62.114	61.917	62.626	-2.9746	-0.075108	-5.3937E-05	NaN	26.693	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31203	+		12906	21788	10591	10603							0.13528919239411152
FVTMTASRML	10	Unmodified	_FVTMTASRML_					0	0	0		ENSG00000162517|ENST00000373703|PEF1	ENSG00000162517|ENST00000373703|PEF1	ENSG00000162517|ENST00000373703|PEF1	MULTI-MSMS	OvCa99_classI_Rep5	1	578.7982788085938	2	578.796294	1155.57804	2.5135	0.0014548	-0.96946	-0.00056112	1.544	0.00089366	578.7960553770195	97.832	0.98232	97.832	97.479	98.461	0					60	22	4	0	0	0	0.15491	1	10768	10768		101.25	26.209	1	1418100			12907	6190	10592	10604	14032	14032					0.006469988992648723
FVTRFLKQA	9	Unmodified	_FVTRFLKQA_					0	0	0			REV__tr|A0A553SMB9|A0A553SMB9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_22155PE=4SV=1	REV__tr|A0A553SMB9|A0A553SMB9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_22155PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	555.3253173828125	2	555.326934	1108.63931	-1.5089	-0.00083795	-2.583	-0.0014344	-4.0919	-0.0022724	555.3254164224488	85.229	1.789	83.009	82.448	84.237	-2.2204					96	35	5	0	0	0	0.55588	1	5000	5000		37.159	5.5248	1	1211800	+		12908	30312	10593	10605	14033	14033					0.08934014985220529
FVTRKQGSK	9	Unmodified	_FVTRKQGSK_					0	0	0			REV__tr|A0A553SI77|A0A553SI77_NIACIPeptidaseS8OS=NialliacirculansOX=1397GN=CEQ21_14350PE=3SV=1	REV__tr|A0A553SI77|A0A553SI77_NIACIPeptidaseS8OS=NialliacirculansOX=1397GN=CEQ21_14350PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2918701171875	2	525.806365	1049.59818	-1.0985	-0.00057758	2.1353	0.0011227	1.0368	0.00054515	526.3093877080347	26.676	0.34964	26.676	26.492	26.841	0					15	6	3	0	0	0	0.027462	1	713	713		47.657	14.845	1	52078	+		12909	29868	10594	10606	14034	14034					0.07536253945750104
FVTSLAHQN	9	Unmodified	_FVTSLAHQN_					0	0	0			REV__tr|A0A553SKL4|A0A553SKL4_NIACIHemechaperoneHemWOS=NialliacirculansOX=1397GN=CEQ21_18930PE=3SV=1	REV__tr|A0A553SKL4|A0A553SKL4_NIACIHemechaperoneHemWOS=NialliacirculansOX=1397GN=CEQ21_18930PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.7654113769531	2	508.761623	1015.50869	2.0191	0.0010272	3.9332	0.0020011	5.9523	0.0030283	508.7635499341916	93.76	0.83921	93.76	93.508	94.348	0					46	19	3	0	0	0	0.38529	1	10177	10177		53.351	0.41475	1	2465200	+		12910	30136	10595	10607	14035	14035					0.001559992663715093
FVTVAIMHS	9	Unmodified	_FVTVAIMHS_					0	0	0			REV__ENSG00000167822|ENST00000642058|OR8J3	REV__ENSG00000167822|ENST00000642058|OR8J3	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.25958251953125	2	502.76532	1003.51609	-0.17176	-8.6353E-05	2.9501	0.0014832	2.7783	0.0013968	502.7666495242844	52.456	0.43803	52.456	52.259	52.697	0					13	9	2	0	0	0	0.027456	1	4145	4145		38.806	8.3025	1	335640	+		12911	21310	10596	10608	14036	14036					0.014470155424419318
FVVACLKI	8	Unmodified	_FVVACLKI_					0	0	0			REV__ENST00000260983.7_1_2:197065763-197065988:-|nuORF	REV__ENST00000260983.7_1_2:197065763-197065988:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	447.2410583496094	2	446.769874	891.525196	0.59465	0.00026567	2.9152	0.0013024	3.5099	0.0015681	446.7712062953426	59.958	0.39125	56.528	56.358	56.749	-3.43					14	7	2	0	0	0	0.028476	1	4028	4028		28.254	0	1	26551	+		12912	23936	10597	10609	14037	14037					0.07509408898772563
FVVAPAQIN	9	Unmodified	_FVVAPAQIN_					0	0	0			REV__nc|ENSG00000077942|P23142-4|FBLN1	REV__nc|ENSG00000077942|P23142-4|FBLN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.3040466308594	2	479.77146	957.528367	1.5466	0.00074201	1.5138	0.00072629	3.0604	0.0014683	479.77173349893553	109.91	0.54269	109.91	109.64	110.18	0					18	11	2	0	0	0	0.027433	1	12494	12494		57.811	0	1	132220	+		12913	28736	10598	10610	14038	14038					0.04790375277138992
FVVAVFWII	9	Unmodified	_FVVAVFWII_					0	0	0		nc|ENSG00000146416|Q9NVV5-6|AIG1;nc|ENSG00000146416|Q9NVV5-5|AIG1;nc|ENSG00000146416|Q9NVV5-3|AIG1;nc|ENSG00000146416|Q9NVV5-4|AIG1;ENSG00000146416|ENST00000357847|AIG1;nc|ENSG00000146416|Q9NVV5-1|AIG1	nc|ENSG00000146416|Q9NVV5-6|AIG1	nc|ENSG00000146416|Q9NVV5-6|AIG1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.7970581054688	2	547.325871	1092.63719	0.24993	0.00013679	2.8743	0.0015732	3.1242	0.0017099	547.3267995258857	89.936	1.1113	87.361	87.1	88.212	-2.575					67	21	5	0	0	0	0.027462	1	7802	7802		49.211	3.2385	1	160640			12914	5291	10599	10611	14039	14039					0.09457586247413019
FVVAVFWII	9	Unmodified	_FVVAVFWII_					0	0	0		nc|ENSG00000146416|Q9NVV5-6|AIG1;nc|ENSG00000146416|Q9NVV5-5|AIG1;nc|ENSG00000146416|Q9NVV5-3|AIG1;nc|ENSG00000146416|Q9NVV5-4|AIG1;ENSG00000146416|ENST00000357847|AIG1;nc|ENSG00000146416|Q9NVV5-1|AIG1	nc|ENSG00000146416|Q9NVV5-6|AIG1	nc|ENSG00000146416|Q9NVV5-6|AIG1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	547.325871	1092.63719	1.7927	0.00098119	0.7655	0.00041898	2.5582	0.0014002	547.3260560363168	88.722	0.98461	87.354	87.037	88.021	-1.3676	-0.0033275	-0.00062927	NaN	49.211	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90143			12915	5291	10599	10611							0.09457586247413019
FVVDSAAFQ	9	Unmodified	_FVVDSAAFQ_					0	0	0		ENSG00000144867|ENST00000678299|SRPRB;IGF2BP2-SRPRB|1|fusion	ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.8021240234375	2	492.245275	982.475997	0.57954	0.00028528	-4.2365	-0.0020854	-3.6569	-0.0018001	492.2430247496246	60.501	0.8952	57.071	56.749	57.644	-3.43					27	17	2	0	0	0	0.027448	1	4165	4165		44.117	5.3107	1	81681			12916	5190	10600	10612	14040	14040					-0.015942078564762596
FVVDSAAFQ	9	Unmodified	_FVVDSAAFQ_					0	0	0		ENSG00000144867|ENST00000678299|SRPRB;IGF2BP2-SRPRB|1|fusion	ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	MULTI-MATCH	OvCa99_classI_Rep5	1		2	492.245275	982.475997	-0.20885	-0.00010281	-3.8702	-0.0019051	-4.0791	-0.0020079	492.2432497267033	56.858	0.79929	56.858	56.422	57.221	0	-0.10664	7.3479E-05	NaN	44.117	38	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1152400			12917	5190	10600	10612							-0.015942078564762596
FVVETSVNK	9	Unmodified	_FVVETSVNK_					0	0	0		tr|A0A553SGU0|A0A553SGU0_NIACIRNA-bindingtranscriptionalaccessoryproteinOS=NialliacirculansOX=1397GN=CEQ21_11540PE=4SV=1	tr|A0A553SGU0|A0A553SGU0_NIACIRNA-bindingtranscriptionalaccessoryproteinOS=NialliacirculansOX=1397GN=CEQ21_11540PE=4SV=1	tr|A0A553SGU0|A0A553SGU0_NIACIRNA-bindingtranscriptionalaccessoryproteinOS=NialliacirculansOX=1397GN=CEQ21_11540PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	511.7816162109375	2	511.779482	1021.54441	1.0265	0.00052535	1.5587	0.00079769	2.5852	0.001323	511.78045448470596	154.36	1.0446	154.36	154.03	155.07	0					61	20	4	0	0	0	0.28934	1	18077	18077		64.207	8.7031	1	232080			12918	33196	10601	10613	14041	14041					0.034500367233931684
FVVFVNDP	8	Unmodified	_FVVFVNDP_					0	0	0		tr|A0A553SL66|A0A553SL66_NIACIGTPaseDerOS=NialliacirculansOX=1397GN=derPE=3SV=1	tr|A0A553SL66|A0A553SL66_NIACIGTPaseDerOS=NialliacirculansOX=1397GN=derPE=3SV=1	tr|A0A553SL66|A0A553SL66_NIACIGTPaseDerOS=NialliacirculansOX=1397GN=derPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	468.3067932128906	2	468.744911	935.475269	0.2558	0.00011991	-4.3943	-0.0020598	-4.1385	-0.0019399	468.74266334134296	102.6	1.417	100.4	99.727	101.14	-2.1994					47	26	3	0	0	0	0.028476	1	9324	9324		9.4706	0	1	88546			12919	33689	10602	10614	14042	14042					0.004949974944793212
FVVGFMKPD	9	Unmodified	_FVVGFMKPD_					0	0	0			REV__ENST00000370018.7_1_20:62289788-62290707:+|nuORF	REV__ENST00000370018.7_1_20:62289788-62290707:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.2847900390625	2	520.267696	1038.52084	1.1757	0.00061167	1.1397	0.00059293	2.3154	0.0012046	520.2681799996647	91.717	1.6848	90.482	89.954	91.639	-1.2355					90	31	4	0	0	0	0.027462	1	8135	8135		31.955	8.4322	1	767790	+		12920	24772	10603	10615	14043	14043					0.003118996852208511
FVVHMKQKGKK	11	Unmodified	_FVVHMKQKGKK_					0	0	0		ENSG00000197747|ENST00000368811|S100A10	ENSG00000197747|ENST00000368811|S100A10	ENSG00000197747|ENST00000368811|S100A10	MULTI-MSMS	OvCa9_classI_Rep4_	4	443.9322509765625	3	443.932309	1328.7751	0.77556	0.0003443	-0.82004	-0.00036404	-0.044479	-1.9746E-05	443.93184408383087	34.262	1.1509	31.473	31.2	32.351	-2.7881					58	22	3	0	0	0	0.6112	3	989	989;999;1012		43.651	10.611	1	213640			12921	8743	10604	10616	14044;14045;14046	14044					0.12385966504371027
FVVHMKQKGKK	11	Unmodified	_FVVHMKQKGKK_					0	0	0		ENSG00000197747|ENST00000368811|S100A10	ENSG00000197747|ENST00000368811|S100A10	ENSG00000197747|ENST00000368811|S100A10	MULTI-MATCH	OvCa9_classI_Rep2	2		3	443.932309	1328.7751	0.30969	0.00013748	-0.22013	-9.7721E-05	0.089566	3.9761E-05	443.93209490451795	34.138	0.94031	31.428	31.168	32.109	-2.7097	-0.022633	0.0006637	NaN	43.651	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55955			12922	8743	10604	10616							0.12385966504371027
FVVIYINL	8	Unmodified	_FVVIYINL_					0	0	0			REV__ENSG00000101236|ENST00000358395|RNF24	REV__ENSG00000101236|ENST00000358395|RNF24	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.7815246582031	2	490.794404	979.574254	-1.0396	-0.00051021	3.1799	0.0015607	2.1404	0.0010505	490.79596351002886	49.98	0.43344	49.98	49.768	50.201	0					13	9	2	0	0	0	0.028476	1	3748	3748		26.796	12.132	1	162080	+		12923	17485	10605	10617	14047	14047					0.08365020459370953
FVVKHNAKQFK	11	Unmodified	_FVVKHNAKQFK_					0	0	0			REV__nc|ENSG00000152952|O00469|PLOD2	REV__nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	OvCa99_classI_Rep5	1	449.263671875	3	449.262823	1344.76664	0.078679	3.5347E-05	2.3954	0.0010762	2.4741	0.0011115	449.2638015444655	23.817	2.3953	23.817	23.597	25.992	0					115	47	3	0	0	0	0.69735	1	414	414		30.569	1.0181	1	417070	+		12924	20312	10606	10618	14048	14048					0.10804735859392167
FVVLAMLVLT	10	Unmodified	_FVVLAMLVLT_					0	0	0			REV__ENSG00000113504|ENST00000264930|SLC12A7	REV__ENSG00000113504|ENST00000264930|SLC12A7	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.8139038085938	2	553.338121	1104.66169	-0.22579	-0.00012494	4.3674	0.0024167	4.1416	0.0022917	553.3403979315726	71.441	0.56805	71.441	71.267	71.835	0					29	13	3	0	0	0	0.026752	1	6895	6895		44.117	5.3107	1	934410	+		12925	18152	10607	10619	14049	14049					0.11354478338625995
FVVLANDIEP	10	Unmodified	_FVVLANDIEP_					0	0	0			REV__ENSG00000127948|ENST00000461988|POR	REV__ENSG00000127948|ENST00000461988|POR	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.8455200195312	2	558.800414	1115.58628	0.3038	0.00016976	-4.196	-0.0023447	-3.8922	-0.0021749	558.7981025778497	88.984	0.83646	86.381	86.136	86.972	-2.6027					27	16	2	0	0	0	0.026714	1	7616	7616		42.864	23.761	1	38248	+		12926	18832	10608	10620	14050	14050					0.033105924118899566
FVVLHSFTD	9	Unmodified	_FVVLHSFTD_					0	0	0		ENSG00000080166|ENST00000377028|DCT	ENSG00000080166|ENST00000377028|DCT	ENSG00000080166|ENST00000377028|DCT	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.8072509765625	2	532.7742	1063.53385	0.33051	0.00017609	2.6445	0.0014089	2.975	0.001585	532.7753561547605	109.84	0.73409	108.69	108.45	109.19	-1.1444					16	13	2	0	0	0	0.027462	1	7915	7915		31.955	9.995	1	25804			12927	1628	10609	10621	14051	14051					0.004620540689757036
FVVLLFLIL	9	Unmodified	_FVVLLFLIL_					0	0	0		nc|ENSG00000170262|Q8TCY5-2|MRAP;ENSG00000170262|ENST00000303645|MRAP;nc|ENSG00000170262|Q8TCY5-1|MRAP	nc|ENSG00000170262|Q8TCY5-2|MRAP	nc|ENSG00000170262|Q8TCY5-2|MRAP	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.8623046875	2	538.859547	1075.70454	2.6704	0.0014389	2.5078	0.0013513	5.1781	0.0027903	538.8612720845362	133.45	7.6689	131.93	131.41	139.08	-1.5257					434	157	6	0	0	0	0.32242	1	13415	13415		60.404	11.193	1	17348000			12928	7085	10610	10622	14052	14052					0.16971616458386052
FVVPISGWI	9	Unmodified	_FVVPISGWI_					0	0	0		tr|A0A7D6VQ35|A0A7D6VQ35_9CLOTGlycosyltransferasefamily39proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18675PE=4SV=1	tr|A0A7D6VQ35|A0A7D6VQ35_9CLOTGlycosyltransferasefamily39proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18675PE=4SV=1	tr|A0A7D6VQ35|A0A7D6VQ35_9CLOTGlycosyltransferasefamily39proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18675PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.77447509765625	2	509.292028	1016.5695	-1.5161	-0.00077216	-2.4736	-0.0012598	-3.9898	-0.002032	509.2906072836699	118.81	0.47466	117.46	117.21	117.68	-1.3444					15	8	2	0	0	0	0.027462	1	11159	11159		42.474	15.782	1	22013			12929	34818	10611	10623	14053	14053					0.06188136316620785
FVVPISGWI	9	Unmodified	_FVVPISGWI_					0	0	0		tr|A0A7D6VQ35|A0A7D6VQ35_9CLOTGlycosyltransferasefamily39proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18675PE=4SV=1	tr|A0A7D6VQ35|A0A7D6VQ35_9CLOTGlycosyltransferasefamily39proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18675PE=4SV=1	tr|A0A7D6VQ35|A0A7D6VQ35_9CLOTGlycosyltransferasefamily39proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18675PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	509.292028	1016.5695	-1.335	-0.0006799	-2.9263	-0.0014904	-4.2613	-0.0021703	509.29038894508426	117.57	0.49584	117.44	117.16	117.66	-0.12868	-0.019108	-0.00021083	NaN	18.324	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23907			12930	34818	10611	10623							0.06188136316620785
FVVPISGWI	9	Unmodified	_FVVPISGWI_					0	0	0		tr|A0A7D6VQ35|A0A7D6VQ35_9CLOTGlycosyltransferasefamily39proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18675PE=4SV=1	tr|A0A7D6VQ35|A0A7D6VQ35_9CLOTGlycosyltransferasefamily39proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18675PE=4SV=1	tr|A0A7D6VQ35|A0A7D6VQ35_9CLOTGlycosyltransferasefamily39proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18675PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	509.292028	1016.5695	-0.32465	-0.00016534	-3.6364	-0.001852	-3.961	-0.0020173	509.28980581450486	118.51	0.59491	117.48	117.29	117.88	-1.0271	0.018732	-0.0009341	NaN	18.324	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25036			12931	34818	10611	10623							0.06188136316620785
FVVPNIINEI	10	Unmodified	_FVVPNIINEI_					0	0	0			REV__tr|A0A7D6VSB5|A0A7D6VSB5_9CLOTDUF2313domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10280PE=4SV=1	REV__tr|A0A7D6VSB5|A0A7D6VSB5_9CLOTDUF2313domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10280PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.7990112304688	2	579.331882	1156.64921	1.6535	0.00095794	-2.2287	-0.0012912	-0.57517	-0.00033322	579.3302085030803	95.557	0.3717	95.557	95.284	95.656	0					17	8	3	0	0	0	0.027117	1	10450	10450		23.042	0	1	229240	+		12932	31484	10612	10624	14054	14054					0.07715158199948746
FVVQSIGRL	9	Unmodified	_FVVQSIGRL_					0	0	0			REV__ENSG00000141469|ENST00000321925|SLC14A1	REV__ENSG00000141469|ENST00000321925|SLC14A1	MULTI-MSMS	OvCa9_classI_Rep3	3	509.8042907714844	2	509.805834	1017.59712	-1.3099	-0.00066782	-2.9211	-0.0014892	-4.231	-0.002157	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.68424	1	10990	10990		21.96	1.013	1	99460	+		12933	19742	10613	10625	14055	14055					0.08902039576867082
FVVTTPYAQ	9	Unmodified	_FVVTTPYAQ_					0	0	0			REV__ENST00000418559.5_1_2:183617332-183641856:+|nuORF	REV__ENST00000418559.5_1_2:183617332-183641856:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	513.269775390625	2	513.26875	1024.52295	1.5863	0.00081421	2.6258	0.0013477	4.2121	0.002162	513.2687111263441	129.81	0.79759	129.81	129.45	130.25	0					47	16	5	0	0	0	0.38529	1	15053	15053		53.351	9.2347	1	392840	+		12934	17005	10614	10626	14056	14056					0.011666516946434058
FVWPQPGR	8	Unmodified	_FVWPQPGR_					0	0	0		ENST00000342085.8_1_16:2650396-2650507:+|nuORF	ENST00000342085.8_1_16:2650396-2650507:+|nuORF	ENST00000342085.8_1_16:2650396-2650507:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.7789611816406	2	493.763969	985.513385	1.9614	0.00096848	-3.1846	-0.0015724	-1.2231	-0.00060395	493.76411695956074	78.394	0.36334	78.394	78.093	78.457	0					14	8	2	0	0	0	0.028476	1	7907	7907		26.796	0	1	249350			12935	10575	10615	10627	14057	14057					0.020049281998012702
FVYCIAPTI	9	Unmodified	_FVYCIAPTI_					0	0	0			REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|239|3|anti-sense	REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|239|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.2344970703125	2	513.770071	1025.52559	1.6908	0.00086869	1.8976	0.00097494	3.5884	0.0018436	514.2748011949734	111.02	0.22142	111.02	110.85	111.07	0					7	4	2	0	0	0	0.027462	1	12594	12594		25.45	0	1	95377	+		12936	28385	10616	10628	14058	14058					0.013847838279616553
FVYGGNRFN	9	Unmodified	_FVYGGNRFN_					0	0	0		ENSG00000162688|ENST00000361915|AGL;nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL	ENSG00000162688|ENST00000361915|AGL	ENSG00000162688|ENST00000361915|AGL	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3333129882812	2	537.261791	1072.50903	1.2815	0.00068849	-2.3068	-0.0012393	-1.0253	-0.00055085	537.2597214774905	143.67	0.54434	143.67	143.41	143.96	0					20	10	3	0	0	0	0.027462	1	16766	16766		24.203	5.0992	1	67072			12937	6215	10617	10629	14059	14059					-0.024325810137497683
FVYIFGIVL	9	Unmodified	_FVYIFGIVL_					0	0	0			REV__tr|A0A7D6VPT4|A0A7D6VPT4_9CLOTDUF1189domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00190PE=4SV=1	REV__tr|A0A7D6VPT4|A0A7D6VPT4_9CLOTDUF1189domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00190PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	535.8146362304688	2	535.817879	1069.6212	-0.3221	-0.00017258	-3.2241	-0.0017275	-3.5462	-0.0019001	535.8161736900166	131.64	1.5686	131.41	131.2	132.77	-0.22697					82	31	4	0	0	0	0.53728	1	12985	12985		39.021	6.2091	1	198290	+		12938	31274	10618	10630	14060	14060					0.08917880010517365
FVYPFFLL	8	Unmodified	_FVYPFFLL_					0	0	0		L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|269|2|anti-sense	L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|269|2|anti-sense	L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|269|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.7969970703125	2	523.291497	1044.56844	1.7516	0.00091661	2.6694	0.0013969	4.421	0.0023135	523.2930513326943	86.993	0.33081	86.993	86.844	87.174	0					14	7	3	0	0	0	0.028476	1	9194	9194		24.504	0	1	726700			12939	14747	10619	10631	14061	14061					0.04793921947725721
FVYPFFLL	8	Unmodified	_FVYPFFLL_					0	0	0		L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|269|2|anti-sense	L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|269|2|anti-sense	L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|269|2|anti-sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	523.291497	1044.56844	1.949	0.0010199	0.098016	5.1291E-05	2.047	0.0010712	523.2915062412013	88.519	0.88589	87.152	86.69	87.576	-1.3676	0.071877	-0.00092136	NaN	33.493	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56088			12940	14747	10619	10631							0.04793921947725721
FVYPFFLL	8	Unmodified	_FVYPFFLL_					0	0	0		L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|269|2|anti-sense	L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|269|2|anti-sense	L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|269|2|anti-sense	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	523.291497	1044.56844	0.22136	0.00011584	1.4633	0.00076575	1.6847	0.00088159	523.292157218696	89.67	1.1004	87.095	86.752	87.853	-2.575	0.01479	0.00050756	NaN	33.493	38	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77164			12941	14747	10619	10631							0.04793921947725721
FVYYLVSI	8	Unmodified	_FVYYLVSI_					0	0	0		tr|A0A553SRN2|A0A553SRN2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01345PE=4SV=1;tr|A0A553SRI7|A0A553SRI7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01175PE=4SV=1	tr|A0A553SRN2|A0A553SRN2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01345PE=4SV=1	tr|A0A553SRN2|A0A553SRN2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01345PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.7825012207031	2	502.278586	1002.54262	-0.23534	-0.00011821	-1.9432	-0.00097604	-2.1786	-0.0010942	502.27748614458244	70.612	0.83441	70.612	70.005	70.839	0					43	20	3	0	0	0	0.028476	1	6811	6811		37.028	0	1	2765700			12942	34279	10620	10632	14062	14062					0.04145027705408211
FWEPPAPAGLA	11	Unmodified	_FWEPPAPAGLA_					0	0	0		ENST00000330688.8_1_3:25469962-25470082:+|nuORF	ENST00000330688.8_1_3:25469962-25470082:+|nuORF	ENST00000330688.8_1_3:25469962-25470082:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.2901611328125	2	578.295299	1154.57605	-7.0214	-0.0040605	-2.7674	-0.0016004	-9.7888	-0.0056608	578.2935937226971	160.38	4.1596	158.77	158.05	162.21	-1.6101					391	105	5	0	0	0	0.58594	1	16153	16153		45.952	8.1404	1	1912500			12943	10436	10621	10633	14063	14063					0.004940294773405185
FWFNRLSV	8	Unmodified	_FWFNRLSV_					0	0	0		tr|A0A553SLT7|A0A553SLT7_NIACIArsRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21215PE=4SV=1	tr|A0A553SLT7|A0A553SLT7_NIACIArsRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21215PE=4SV=1	tr|A0A553SLT7|A0A553SLT7_NIACIArsRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21215PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	535.327392578125	2	534.784902	1067.55525	-1.3167	-0.00070417	-2.5116	-0.0013432	-3.8283	-0.0020473	534.7860046632206	58.742	1.0162	55.962	55.436	56.452	-2.7801					30	19	3	0	0	0	0.028476	1	4284	4284		35.201	0	1	14051			12944	33762	10622	10634	14064	14064					0.024174838883027405
FWIIAVTSL	9	Unmodified	_FWIIAVTSL_					0	0	0			REV__tr|A0A553SJE9|A0A553SJE9_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16580PE=4SV=1	REV__tr|A0A553SJE9|A0A553SJE9_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16580PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	525.3048706054688	2	525.305136	1048.59572	0.77173	0.00040539	-1.5086	-0.00079248	-0.73689	-0.00038709	525.3044048306723	126.65	1.6779	126.41	126.1	127.78	-0.23589					88	33	5	0	0	0	0.14739	1	12378	12378		85.359	3.119	1	536860	+		12945	30003	10623	10635	14065	14065					0.07336405488103992
FWKVPLVF	8	Unmodified	_FWKVPLVF_					0	0	0			REV__ENST00000319285.4_1_16:30435205-30435436:-|nuORF	REV__ENST00000319285.4_1_16:30435205-30435436:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.7798461914062	2	518.304939	1034.59532	-1.2091	-0.0006267	3.3529	0.0017378	2.1438	0.0011111	518.8082452403648	41.721	0.26148	38.74	38.645	38.906	-2.9804					5	4	2	0	0	0	0.028476	1	1885	1885		44.531	0	1	8311	+		12946	24432	10624	10636	14066	14066					0.07941030558913553
FWLERGPS	8	Unmodified	_FWLERGPS_					0	0	0			REV__ENSG00000101670|ENST00000261292|LIPG	REV__ENSG00000101670|ENST00000261292|LIPG	MULTI-SECPEP	OvCa9_classI_Rep3	3	495.2982482910156	2	496.253434	990.492316	-0.59679	-0.00029616	4.4137	0.0021903	3.8169	0.0018941	496.2553407909007	89.248	1.2041	87.117	86.75	87.954	-2.1309					55	23	3	0	0	0	0.028476	1	5448	5448		49.442	10.189	1	119940	+		12947	17512	10625	10637	14067	14067					-0.003310818997192655
FWLTKDCAK	9	Unmodified	_FWLTKDCAK_					0	0	0		ENST00000335509.10_1_12:113734652-113734793:+|nuORF	ENST00000335509.10_1_12:113734652-113734793:+|nuORF	ENST00000335509.10_1_12:113734652-113734793:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	556.284912109375	2	556.283877	1110.5532	1.8039	0.0010035	1.6152	0.00089852	3.4191	0.001902	556.2846347321127	29.521	0.87109	26.811	26.636	27.508	-2.7097					46	17	3	0	0	0	0.53483	1	732	732		39.253	10.083	1	197300			12948	10499	10626	10638	14068	14068					0.0023468708818654704
FWPRRWRLWLA	11	Unmodified	_FWPRRWRLWLA_					0	0	0		ENST00000358933.9_1_16:67906988-67910776:+|nuORF	ENST00000358933.9_1_16:67906988-67910776:+|nuORF	ENST00000358933.9_1_16:67906988-67910776:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2796020507812	3	529.633362	1585.87826	-0.00058636	-3.1055E-07	-0.54887	-0.0002907	-0.54945	-0.00029101	529.6330085893476	31.732	0.24836	31.732	31.608	31.857	0					6	4	2	0	0	0	0.026435	1	1322	1322		9.6461	1.9667	1	18922			12949	10745	10627	10639	14069	14069					0.10875215007217776
FWTKVQTETL	10	Unmodified	_FWTKVQTETL_					0	0	0			REV__ENSG00000188816|ENST00000339992|HMX2	REV__ENSG00000188816|ENST00000339992|HMX2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	419.198974609375	3	418.223923	1251.64994	-2.1458	-0.00089742	2.4557	0.001027	0.30993	0.00012962	418.2242516246185	50.019	0.25968	46.877	46.663	46.922	-3.1416					5	4	2	0	0	0	0.027021	1	2851	2851		20.837	0	1	11664	+		12950	22740	10628	10640	14070	14070					0.03417952848985806
FWVPAAQMR	9	Oxidation (M)	_FWVPAAQM(Oxidation (M))R_		FWVPAAQM(1)R		FWVPAAQM(41)R	0	0	1		ENST00000527370.5_1_11:67259506-67263940:-|nuORF	ENST00000527370.5_1_11:67259506-67263940:-|nuORF	ENST00000527370.5_1_11:67259506-67263940:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.2808227539062	2	561.281669	1120.54878	0.10313	5.7884E-05	-3.4313	-0.0019259	-3.3282	-0.001868	561.2796104716807	43.73	1.4679	40.722	40.431	41.899	-3.0074					72	28	4	0	0	0	0.52083	1	2123	2123		40.573	7.057	1	527260			12951	13234	10629	10641	14071	14071		348			-0.006667773347089678
FWWWFLHKFRV	11	Unmodified	_FWWWFLHKFRV_					0	0	0		ENST00000558615.5_1_15:49867204-49907386:-|nuORF	ENST00000558615.5_1_15:49867204-49907386:-|nuORF	ENST00000558615.5_1_15:49867204-49907386:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3182373046875	3	551.294346	1650.86121	-0.51287	-0.00028274	0.94834	0.00052281	0.43547	0.00024007	551.2948246776136	53.112	0.21543	53.112	52.999	53.214	0					6	4	2	0	0	0	0.02653	1	4210	4210		6.3209	4.7979	1	217630			12952	13701	10630	10642	14072	14072					0.06181294401358173
FYADHPFIFL	10	Unmodified	_FYADHPFIFL_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	OvCa99_classI_Rep5	1	635.3201293945312	2	635.318774	1268.623	1.5727	0.00099916	0.90196	0.00057303	2.4747	0.0015722	635.3191913572956	144.23	1.618	144.23	143.91	145.53	0					102	33	4	0	0	0	0.45225	1	16861	16861		60.972	0.85368	1	1263800			12953	5448	10631	10643	14073	14073					-0.0005711097155653988
FYANGIRPD	9	Unmodified	_FYANGIRPD_					0	0	0		tr|A0A553SJI0|A0A553SJI0_NIACIBifunctionalmetallophosphatase/5'-nucleotidaseOS=NialliacirculansOX=1397GN=CEQ21_16730PE=3SV=1	tr|A0A553SJI0|A0A553SJI0_NIACIBifunctionalmetallophosphatase/5'-nucleotidaseOS=NialliacirculansOX=1397GN=CEQ21_16730PE=3SV=1	tr|A0A553SJI0|A0A553SJI0_NIACIBifunctionalmetallophosphatase/5'-nucleotidaseOS=NialliacirculansOX=1397GN=CEQ21_16730PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	526.7621459960938	2	526.761623	1051.50869	0.69507	0.00036614	2.0482	0.0010789	2.7433	0.001445	526.7626305368649	121.64	1.7818	120.61	120.22	122	-1.0286					87	33	4	0	0	0	0.38529	2	9312	9312;9324		53.351	7.2187	1	598650			12954	33505	10632	10644	14074;14075	14074					-0.015000007336084309
FYANGIRPD	9	Unmodified	_FYANGIRPD_					0	0	0		tr|A0A553SJI0|A0A553SJI0_NIACIBifunctionalmetallophosphatase/5'-nucleotidaseOS=NialliacirculansOX=1397GN=CEQ21_16730PE=3SV=1	tr|A0A553SJI0|A0A553SJI0_NIACIBifunctionalmetallophosphatase/5'-nucleotidaseOS=NialliacirculansOX=1397GN=CEQ21_16730PE=3SV=1	tr|A0A553SJI0|A0A553SJI0_NIACIBifunctionalmetallophosphatase/5'-nucleotidaseOS=NialliacirculansOX=1397GN=CEQ21_16730PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.76318359375	2	526.761623	1051.50869	-0.62952	-0.00033161	3.5257	0.0018572	2.8962	0.0015256	526.763355257348	122.03	2.1557	120.68	120.16	122.32	-1.3479					91	42	4	0	0	0	0.56889	1	11520	11520		35.618	2.1027	1	539000			12955	33505	10632	10644	14076	14076					-0.015000007336084309
FYCGGVGLLF	10	Unmodified	_FYCGGVGLLF_					0	0	0			REV__ENSG00000171596|ENST00000305141|NMUR1	REV__ENSG00000171596|ENST00000305141|NMUR1	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.2659301757812	2	538.267696	1074.52084	1.3802	0.00074293	-2.431	-0.0013085	-1.0507	-0.00056557	538.2662916016637	130.18	2.1201	128.7	127.23	129.35	-1.4779					57	42	2	0	0	0	0.65806	1	12491	12491		35.201	0.04869	1	56635	+		12956	21629	10633	10645	14077	14077					-0.013441003148045638
FYCGGVGLLF	10	Unmodified	_FYCGGVGLLF_					0	0	0			REV__ENSG00000171596|ENST00000305141|NMUR1	REV__ENSG00000171596|ENST00000305141|NMUR1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	538.267696	1074.52084	0.34815	0.0001874	-0.73018	-0.00039303	-0.38203	-0.00020563	538.2671315515965	129.04	0.64363	128.82	128.57	129.22	-0.22696	0.056583	0.0010986	NaN	35.201	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28545	+		12957	21629	10633	10645							-0.013441003148045638
FYCSLHIL	8	Carbamidomethyl (C)	_FYC(Carbamidomethyl (C))SLHIL_	FYC(1)SLHIL		FYC(66)SLHIL		0	1	0			REV__ENSG00000213759|ENST00000446444|UGT2B11	REV__ENSG00000213759|ENST00000446444|UGT2B11	MULTI-MSMS	OvCa9_classI_Rep2	2	526.7628784179688	2	526.76532	1051.51609	-1.1915	-0.00062765	-2.8156	-0.0014832	-4.0072	-0.0021108	526.7636529760721	120.92	1.9767	120.72	120.16	122.14	-0.19718					97	39	4	0	0	0	0.59103	2	11705	11649;11705		65.897	16.88	1	267620	+		12958	23270	10634	10646	14078;14079	14079	274				-0.007609844575426905
FYCSLHIL	8	Carbamidomethyl (C)	_FYC(Carbamidomethyl (C))SLHIL_	FYC(1)SLHIL		FYC(66)SLHIL		0	1	0			REV__ENSG00000213759|ENST00000446444|UGT2B11	REV__ENSG00000213759|ENST00000446444|UGT2B11	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.762939453125	2	526.76532	1051.51609	-0.62952	-0.00033161	-3.4922	-0.0018396	-4.1217	-0.0021712	526.763355257348	122.03	2.1557	120.68	120.16	122.32	-1.3479					91	42	4	0	0	0	0.59103	1	11510	11510		65.897	25.119	1	539000	+		12959	23270	10634	10646	14080	14080	274				-0.007609844575426905
FYDRDIPTM	9	Unmodified	_FYDRDIPTM_					0	0	0			REV__tr|A0A7D6VXJ4|A0A7D6VXJ4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08950PE=4SV=1	REV__tr|A0A7D6VXJ4|A0A7D6VXJ4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08950PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	579.2747192382812	2	579.268424	1156.5223	1.6534	0.00095778	-0.077115	-4.467E-05	1.5763	0.00091311	579.2683095174557	136.58	1.0028	136.58	136.25	137.26	0					43	20	3	0	0	0	0.46377	1	15913	15913		45.952	3.5558	1	196430	+		12960	31780	10635	10647	14081	14081					-0.04970511016699675
FYETSEKPNIK	11	Unmodified	_FYETSEKPNIK_					0	0	0			REV__tr|A0A7D7A1M5|A0A7D7A1M5_9CLOTGalactose-1-phosphateuridylyltransferaseOS=ClostridiumintestinaleOX=36845GN=galTPE=3SV=1	REV__tr|A0A7D7A1M5|A0A7D7A1M5_9CLOTGalactose-1-phosphateuridylyltransferaseOS=ClostridiumintestinaleOX=36845GN=galTPE=3SV=1	MSMS	OvCa9_classI_Rep4_	4	452.56622314453125	3	452.566237	1354.67688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.105	1	18.766	18.266	19.266	-1.3386								0	0	0	0.19474	1	12	12		22.562	0.78116	1		+		12961	32499	10636	10648	14082	14082					0.013730166695268053
FYFCFFITI	9	Unmodified	_FYFCFFITI_					0	0	0			REV__ENST00000473796.1_1_7:95214955-95221973:-|nuORF	REV__ENST00000473796.1_1_7:95214955-95221973:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	600.85205078125	2	600.793546	1199.57254	0.67797	0.00040732	4.1692	0.0025048	4.8472	0.0029121	600.7961696949546	83.709	0.63283	81.046	80.779	81.412	-2.6629					19	12	2	0	0	0	0.027462	1	6986	6986		17.365	0	1	43563	+		12962	26334	10637	10649	14083	14083					-0.0192635662090197
FYFLLNQLLA	10	Unmodified	_FYFLLNQLLA_					0	0	0			REV__ENSG00000058335|ENST00000558480|RASGRF1	REV__ENSG00000058335|ENST00000558480|RASGRF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	621.3505859375	2	621.350074	1240.6856	-0.25396	-0.0001578	2.4959	0.0015508	2.2419	0.001393	621.3514754380338	20.864	0.45888	19.526	19.311	19.77	-1.3386					12	9	2	0	0	0	0.8236	1	105	105		16.473	1.7795	1	18751	+		12963	16727	10638	10650	14084	14084					0.07488035096662315
FYGDKMNLF	9	Unmodified	_FYGDKMNLF_					0	0	0		nc|ENSG00000119408|Q9HC98-3|NEK6;ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6	nc|ENSG00000119408|Q9HC98-3|NEK6	nc|ENSG00000119408|Q9HC98-3|NEK6	MULTI-MSMS	OvCa99_classI_Rep5	1	568.2701416015625	2	567.76806	1133.52157	1.5492	0.00087957	0.39148	0.00022227	1.9406	0.0011018	567.7681246102276	111.81	1.4563	111.81	111.51	112.97	0					77	31	5	0	0	0	0.055627	2	12704	12704;12731		115.49	30.145	1	2844000			12964	14983	10639	10651	14085;14086	14085					-0.03985305665764827
FYGDKMNLF	9	Unmodified	_FYGDKMNLF_					0	0	0		nc|ENSG00000119408|Q9HC98-3|NEK6;ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6	nc|ENSG00000119408|Q9HC98-3|NEK6	nc|ENSG00000119408|Q9HC98-3|NEK6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	567.76806	1133.52157	0.19898	0.00011297	-2.3373	-0.001327	-2.1383	-0.0012141	567.7666623807778	111.85	1.4292	111.71	111.08	112.51	-0.13961	0.017552	-0.00085182	NaN	115.49	43	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24857			12965	14983	10639	10651							-0.03985305665764827
FYGDKMNLF	9	Unmodified	_FYGDKMNLF_					0	0	0		nc|ENSG00000119408|Q9HC98-3|NEK6;ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6	nc|ENSG00000119408|Q9HC98-3|NEK6	nc|ENSG00000119408|Q9HC98-3|NEK6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	567.76806	1133.52157	1.4403	0.00081775	-3.6025	-0.0020454	-2.1622	-0.0012276	567.7661365358673	112.65	0.68777	111.57	111.37	112.05	-1.0753	-0.11995	-0.0022885	NaN	115.49	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41521			12966	14983	10639	10651							-0.03985305665764827
FYGDKMNLF	9	Unmodified	_FYGDKMNLF_					0	0	0		nc|ENSG00000119408|Q9HC98-3|NEK6;ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6	nc|ENSG00000119408|Q9HC98-3|NEK6	nc|ENSG00000119408|Q9HC98-3|NEK6	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	567.76806	1133.52157	0.95658	0.00054311	-2.9684	-0.0016853	-2.0118	-0.0011422	567.7664116266017	113.13	0.64323	111.68	111.41	112.05	-1.4461	-0.012831	-0.0015684	NaN	115.49	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60227			12967	14983	10639	10651							-0.03985305665764827
FYGDLVNYL	9	Unmodified	_FYGDLVNYL_					0	0	0		PDGFRA|p.R940Vfs*16|1|0.06|ENSG00000134853|chr4:54289051-54289052|-/GTGGATTCTACTTTCTACAATA|frameshift_variant;ENSG00000134853|ENST00000257290|PDGFRA;ENST00000509092.5_1_4:55124935-55146696:+|nuORF;nc|ENSG00000134853|P16234-3|PDGFRA;ENST00000507536.1_1_4:55143544-55147845:+|nuORF	PDGFRA|p.R940Vfs*16|1|0.06|ENSG00000134853|chr4:54289051-54289052|-/GTGGATTCTACTTTCTACAATA|frameshift_variant	PDGFRA|p.R940Vfs*16|1|0.06|ENSG00000134853|chr4:54289051-54289052|-/GTGGATTCTACTTTCTACAATA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	552.2743530273438	2	552.274032	1102.53351	1.4807	0.00081773	0.20738	0.00011453	1.688	0.00093226	552.2740926708751	148.69	1.0355	148.69	148.32	149.36	0					50	20	3	0	0	0	0.21231	1	17396	17396		74.255	13.283	1	323490			12968	4339	10640	10652	14087	14087					-0.013653656509177381
FYGIIRNV	8	Unmodified	_FYGIIRNV_					0	0	0		PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant;PRKDC|p.P3973Afs*40|1|0.09|ENSG00000253729|chr8:47777811-47777812|-/C|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC;PRKDC|p.K2221Nfs*18|1|0.7|ENSG00000253729|chr8:47855320-47855320|T/-|frameshift_variant;PRKDC|p.E932Nfs*48|1|0.03|ENSG00000253729|chr8:47912550-47912550|C/-|frameshift_variant	PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant;PRKDC|p.E932Nfs*48|1|0.03|ENSG00000253729|chr8:47912550-47912550|C/-|frameshift_variant	PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	491.2810363769531	2	491.279452	980.544351	2.1411	0.0010519	0.53845	0.00026453	2.6796	0.0013164	491.27960340370583	94.98	1.0956	94.98	94.69	95.785	0					54	25	3	0	0	0	0.2589	1	10351	10351		114.59	70.055	1	1429800			12969	9437;15523	10641	10653	14088	14088					0.05330081514034646
FYGILPEI	8	Unmodified	_FYGILPEI_					0	0	0		nc|ENSG00000171385|Q9UK17-2|KCND3;ENSG00000171385|ENST00000302127|KCND3	nc|ENSG00000171385|Q9UK17-2|KCND3	nc|ENSG00000171385|Q9UK17-2|KCND3	MULTI-MSMS	OvCa99_classI_Rep5	1	476.2638244628906	2	476.262936	950.51132	1.059	0.00050434	0.80816	0.0003849	1.8671	0.00088924	476.26317187557686	157.12	1.161	157.12	156.85	158.01	0					51	22	4	0	0	0	0.72922	1	18422	18422		37.028	8.7742	1	703630			12970	7192	10642	10654	14089	14089					0.034084546713074815
FYGKKFPFF	9	Unmodified	_FYGKKFPFF_					0	0	0		DOCK4|p.F1456Lfs*4|1|0.11|ENSG00000128512|chr7:111755521-111755536|ACGCTTTTCCACTTCA/-|frameshift_variant;nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4	DOCK4|p.F1456Lfs*4|1|0.11|ENSG00000128512|chr7:111755521-111755536|ACGCTTTTCCACTTCA/-|frameshift_variant;nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MSMS	OvCa99_classI_Rep5	1	590.811767578125	2	590.813128	1179.6117	1.8065	0.0010673	0.077488	4.5781E-05	1.8839	0.0011131	590.8131369116801	106.85	1.0698	106.85	106.49	107.56	0					54	24	3	0	0	0	0.19716	1	12050	12050		76.847	16.553	1	1074000			12971	3882;758	10643	10655	14090	14090					0.02908111724968876
FYGLLIQLL	9	Unmodified	_FYGLLIQLL_					0	0	0		nc|ENSG00000130939|O95155-3|UBE4B;nc|ENSG00000130939|O95155-2|UBE4B;ENSG00000130939|ENST00000343090|UBE4B;nc|ENSG00000130939|O95155-4|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	nc|ENSG00000130939|O95155-3|UBE4B	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3304443359375	2	540.328611	1078.64267	-1.5762	-0.00085169	4.4127	0.0023843	2.8364	0.0015326	540.3309156564876	138.68	4.2384	138.45	137.13	141.37	-0.22697					227	86	3	0	0	0	0.65476	1	13763	13763		25.45	1.9275	1	66382			12972	4026	10644	10656	14091	14091					0.1064926503922834
FYGSLFSVP	9	Unmodified	_FYGSLFSVP_					0	0	0		ENSG00000183454|ENST00000330684|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.7619323730469	2	508.758018	1015.50148	-1.034	-0.00052604	-1.3848	-0.0007045	-2.4187	-0.0012305	508.75679682434327	127.65	0.61075	126.21	125.94	126.55	-1.4357					15	11	2	0	0	0	0.027441	1	12168	12168		45.952	15.634	1	19804			12973	8075	10645	10657	14092	14092					-0.005647333340562
FYHEHRNI	8	Unmodified	_FYHEHRNI_					0	0	0			REV__EPS15L1-CALR3|1|fusion	REV__EPS15L1-CALR3|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	558.2797241210938	2	558.27269	1114.53083	0.88115	0.00049192	4.0106	0.002239	4.8917	0.0027309	558.2748891807187	45.479	0.9103	45.479	45.159	46.069	0					49	20	4	0	0	0	0.66704	1	3139	3139		50.025	0.58299	1	3773900	+		12974	23599	10646	10658	14093	14093					-0.02185776265196182
FYHKYFNYL	9	Unmodified	_FYHKYFNYL_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	OvCa99_classI_Rep5	1	647.8182983398438	2	647.816399	1293.61824	1.8281	0.0011843	0.61189	0.00039639	2.44	0.0015807	647.8166541963259	91.216	2.3251	91.216	90.938	93.263	0					173	55	5	0	0	0	0.030815	3	9798	9798;9826;9860		119.56	37.268	1	14784000			12975	5548	10647	10659	14094;14095;14096	14094					-0.016819951142906575
FYHKYFNYL	9	Unmodified	_FYHKYFNYL_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000528159.1_1_11:44228449-44265767:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	OvCa99_classI_Rep5	1	432.21539306640625	3	432.213358	1293.61824	1.9839	0.00085746	0.47902	0.00020704	2.4629	0.0010645	432.21347849951337	91.241	1.3637	91.241	90.938	92.301	0					90	32	4	0	0	0	0.42676	1	9816	9816		49.442	4.4193	1	3349900			12976	5548	10647	10659	14097	14097					-0.016819951142906575
FYHPAFDLF	9	Unmodified	_FYHPAFDLF_					0	0	0			REV__ENSG00000115020|ENST00000264380|PIKFYVE	REV__ENSG00000115020|ENST00000264380|PIKFYVE	MULTI-MSMS	OvCa99_classI_Rep5	1	578.7791748046875	2	578.776742	1155.53893	1.0367	0.00060004	0.79004	0.00045726	1.8268	0.0010573	578.777171136121	124.84	0.64798	124.84	124.42	125.07	0					26	13	3	0	0	0	0.30002	1	14409	14409		62.978	5.1671	1	240160	+		12977	18214	10648	10660	14098	14098					-0.032616420684462355
FYHPAFDLF	9	Unmodified	_FYHPAFDLF_					0	0	0			REV__ENSG00000115020|ENST00000264380|PIKFYVE	REV__ENSG00000115020|ENST00000264380|PIKFYVE	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	578.776742	1155.53893	1.0367	0.00060004	0.79004	0.00045726	1.8268	0.0010573	578.777171136121	124.84	0.64798	124.84	124.42	125.07	0	-0.049827	0.00050709	NaN	62.978	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240160	+		12978	18214	10648	10660							-0.032616420684462355
FYHPAFDLF	9	Unmodified	_FYHPAFDLF_					0	0	0			REV__ENSG00000115020|ENST00000264380|PIKFYVE	REV__ENSG00000115020|ENST00000264380|PIKFYVE	MULTI-MATCH	OvCa9_classI_Rep3	3		2	578.776742	1155.53893	0.56011	0.00032418	-0.89357	-0.00051718	-0.33346	-0.000193	578.7762907472604	125.99	0.82968	124.93	124.57	125.4	-1.0624	0.039493	-0.0014418	NaN	62.978	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24168	+		12979	18214	10648	10660							-0.032616420684462355
FYHPAFDLF	9	Unmodified	_FYHPAFDLF_					0	0	0			REV__ENSG00000115020|ENST00000264380|PIKFYVE	REV__ENSG00000115020|ENST00000264380|PIKFYVE	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	578.776742	1155.53893	-2.9598	-0.0017131	2.2477	0.0013009	-0.7121	-0.00041215	579.2793349586038	126.31	0.68637	124.9	124.63	125.32	-1.4143	0.010334	0.0021944	NaN	62.978	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20756	+		12980	18214	10648	10660							-0.032616420684462355
FYIAWLCL	8	Unmodified	_FYIAWLCL_					0	0	0		PRKDC|p.E932Nfs*48|1|0.03|ENSG00000253729|chr8:47912550-47912550|C/-|frameshift_variant	PRKDC|p.E932Nfs*48|1|0.03|ENSG00000253729|chr8:47912550-47912550|C/-|frameshift_variant	PRKDC|p.E932Nfs*48|1|0.03|ENSG00000253729|chr8:47912550-47912550|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.3092651367188	2	514.767332	1027.52011	1.0611	0.00054623	0.38487	0.00019812	1.446	0.00074435	514.7672855552388	145.07	0.62784	145.07	144.64	145.27	0					17	12	2	0	0	0	0.028476	1	16982	16982		43.626	13.122	1	42653			12981	15523	10649	10661	14099	14099					0.007451050361396483
FYIHHPVHL	9	Unmodified	_FYIHHPVHL_					0	0	0		nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1;nc|ENSG00000116127|Q8TCU4-3|ALMS1;CCT7-ALMS1|1|fusion	nc|ENSG00000116127|Q8TCU4-2|ALMS1	nc|ENSG00000116127|Q8TCU4-2|ALMS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.2794189453125	2	581.811451	1161.60835	-0.97144	-0.00056519	0.98512	0.00057315	0.013682	7.9604E-06	581.811997234336	65.465	0.47605	65.465	65.231	65.707	0					22	11	3	0	0	0	0.027462	1	6013	6013		49.211	28.264	1	543310			12982	3155	10650	10662	14100	14100					0.034008616709797934
FYIILLFHLS	10	Unmodified	_FYIILLFHLS_					0	0	0			REV__nc|ENSG00000290724|O14609|XKRY	REV__nc|ENSG00000290724|O14609|XKRY	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.3665771484375	2	633.368267	1264.72198	-2.6571	-0.001683	4.0269	0.0025505	1.3698	0.00086757	633.3706685096566	150.42	2.9234	148.98	147.78	150.7	-1.4344					195	63	4	0	0	0	0.80532	1	14944	14944		18.324	2.3176	1	147740	+		12983	29216	10651	10663	14101	14101					0.10020911993387926
FYILFAFC	8	Unmodified	_FYILFAFC_					0	0	0			REV__nc|ENSG00000089335|Q9NR11|ZNF302	REV__nc|ENSG00000089335|Q9NR11|ZNF302	MULTI-MSMS	OvCa99_classI_Rep5	1	512.2560424804688	2	512.254057	1022.49356	0.57971	0.00029696	1.3811	0.0007075	1.9609	0.0010045	512.2546677739402	140.91	0.601	140.91	140.63	141.23	0					22	11	3	0	0	0	0.64315	1	16450	16450		54.895	2.5954	1	135920	+		12984	28751	10652	10664	14102	14102					-0.016785838551868437
FYILFFPFWIW	11	Unmodified	_FYILFFPFWIW_					0	0	0		ENSG00000126821|ENST00000247225|SGPP1	ENSG00000126821|ENST00000247225|SGPP1	ENSG00000126821|ENST00000247225|SGPP1	MULTI-MSMS	OvCa9_classI_Rep2	2	526.9415283203125	3	526.94432	1577.81113	-1.8264	-0.00096242	-2.9799	-0.0015703	-4.8063	-0.0025327	526.9427223697528	84.834	1.2383	83.288	83.001	84.239	-1.5462					80	24	4	0	0	0	0.7246	1	7327	7327		20.837	0.80668	1	724510			12985	3803	10653	10665	14103	14103					0.04533746952870388
FYILYYTL	8	Unmodified	_FYILYYTL_					0	0	0			REV__ENST00000488896.1_1_2:120689943-120692535:+|nuORF	REV__ENST00000488896.1_1_2:120689943-120692535:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.325439453125	2	548.291694	1094.56883	-1.0061	-0.00055164	2.5502	0.0013983	1.5441	0.00084662	548.2928223075488	92.309	0.45799	89.766	89.466	89.924	-2.5425					11	8	2	0	0	0	0.028476	1	8008	8008		25.45	0	1	22688	+		12986	26631	10654	10666	14104	14104					0.02533296876890745
FYINTGTLQF	10	Unmodified	_FYINTGTLQF_					0	0	0		nc|ENSG00000157741|Q6ZU65-2|UBN2;ENSG00000157741|ENST00000473989|UBN2	nc|ENSG00000157741|Q6ZU65-2|UBN2	nc|ENSG00000157741|Q6ZU65-2|UBN2	MULTI-MSMS	OvCa99_classI_Rep5	1	602.3077392578125	2	602.305864	1202.59717	1.4399	0.00086724	0.98987	0.00059621	2.4297	0.0014635	602.3063266509963	144.57	1.5681	144.57	144.21	145.78	0					66	32	3	0	0	0	0.18931	1	16893	16893		96.034	24.738	1	474280			12987	5908	10655	10667	14105	14105					0.0039799478618078865
FYISDFPTAI	10	Unmodified	_FYISDFPTAI_					0	0	0			REV__ENSG00000132874|ENST00000255226|SLC14A2	REV__ENSG00000132874|ENST00000255226|SLC14A2	MULTI-MSMS	OvCa9_classI_Rep3	3	587.296630859375	2	587.294965	1172.57538	-1.5752	-0.00092511	1.7804	0.0010456	0.20518	0.0001205	587.295888726077	118.54	0.74387	117.51	117.19	117.93	-1.0271					51	14	4	0	0	0	0.58282	1	8992	8992		44.117	9.9443	1	1066300	+		12988	19110	10656	10668	14106	14106					-0.00400809962366111
FYISPVNKL	9	Unmodified	_FYISPVNKL_					0	0	0		nc|ENSG00000105778|Q8NBF6-2|AVL9;ENSG00000105778|ENST00000318709|AVL9	nc|ENSG00000105778|Q8NBF6-2|AVL9	nc|ENSG00000105778|Q8NBF6-2|AVL9	MULTI-MSMS	OvCa99_classI_Rep5	1	540.8094482421875	2	540.808042	1079.60153	2.7426	0.0014832	-0.78418	-0.00042409	1.9585	0.0010591	540.8073860294613	100.8	1.1288	100.8	100.11	101.23	0					40	15	4	0	0	0	0.019133	1	11180	11180		148.04	46.831	1	3958100			12989	2498	10657	10669	14107	14107					0.06491503999745873
FYITSRTQF	9	Unmodified	_FYITSRTQF_					0	0	0		ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC	ENSG00000197122|ENST00000373578|SRC	ENSG00000197122|ENST00000373578|SRC	MULTI-MSMS	OvCa99_classI_Rep5	1	581.7992553710938	2	581.798206	1161.58186	1.476	0.00085871	0.51862	0.00030173	1.9946	0.0011604	581.7985148711548	92.074	1.5945	92.074	91.668	93.263	0					75	37	5	0	0	0	0.043101	2	9954	9924;9954		124.08	44.629	1	6437000			12990	8680	10658	10670	14108;14109	14109					0.007531279889917641
FYIVVISLGL	10	Unmodified	_FYIVVISLGL_					0	0	0			REV__tr|A0A7D6ZFM1|A0A7D6ZFM1_9CLOTRodshape-determiningproteinRodAOS=ClostridiumintestinaleOX=36845GN=rodAPE=4SV=1	REV__tr|A0A7D6ZFM1|A0A7D6ZFM1_9CLOTRodshape-determiningproteinRodAOS=ClostridiumintestinaleOX=36845GN=rodAPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3432006835938	2	562.341718	1122.66888	1.2434	0.00069921	1.8105	0.0010181	3.0539	0.0017173	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.75594	1	14068	14068		24.203	1.1603	1	683710	+		12991	31975	10659	10671	14110	14110					0.11245534210706865
FYKFLGVAI	9	Unmodified	_FYKFLGVAI_					0	0	0			REV__tr|A0A7D7A3V6|A0A7D7A3V6_9CLOTAPCfamilypermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23060PE=4SV=1	REV__tr|A0A7D7A3V6|A0A7D7A3V6_9CLOTAPCfamilypermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23060PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.3046875	2	529.307678	1056.6008	0.8176	0.00043276	-2.6596	-0.0014078	-1.842	-0.00097499	529.3059992581138	157.71	0.6048	157.71	157.45	158.05	0					24	11	3	0	0	0	0.44294	1	18496	18496		47.916	3.5384	1	76018	+		12992	32596	10660	10672	14111	14111					0.07476709350703459
FYKKTGNLKL	10	Unmodified	_FYKKTGNLKL_					0	0	0		tr|A0A553SHR8|A0A553SHR8_NIACICarbonstarvationproteinAOS=NialliacirculansOX=1397GN=CEQ21_13485PE=3SV=1	tr|A0A553SHR8|A0A553SHR8_NIACICarbonstarvationproteinAOS=NialliacirculansOX=1397GN=CEQ21_13485PE=3SV=1	tr|A0A553SHR8|A0A553SHR8_NIACICarbonstarvationproteinAOS=NialliacirculansOX=1397GN=CEQ21_13485PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.35888671875	2	606.360973	1210.70739	0.38634	0.00023426	-4.331	-0.0026261	-3.9446	-0.0023919	606.3582874939276	105.17	1.5135	103.15	102.79	104.31	-2.0161					81	29	4	0	0	0	0.44431	1	9564	9564		62.107	0	1	610230			12993	33301	10661	10673	14112	14112					0.11046839845243994
FYKPHAPII	9	Unmodified	_FYKPHAPII_					0	0	0		ENSG00000137962|ENST00000260526|ARHGAP29	ENSG00000137962|ENST00000260526|ARHGAP29	ENSG00000137962|ENST00000260526|ARHGAP29	MULTI-MSMS	OvCa99_classI_Rep5	1	543.3156127929688	2	543.310752	1084.60695	2.09	0.0011355	0.18221	9.8997E-05	2.2722	0.0012345	543.3108580764725	78.362	0.94389	78.362	78.093	79.037	0					57	22	4	0	0	0	0.11842	1	7932	7932		92.191	9.9501	1	4067300			12994	4640	10662	10674	14113	14113					0.06803227582213367
FYKYHVEKQAI	11	Unmodified	_FYKYHVEKQAI_					0	0	0		tr|A0A553SNK9|A0A553SNK9_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_24690PE=4SV=1	tr|A0A553SNK9|A0A553SNK9_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_24690PE=4SV=1	tr|A0A553SNK9|A0A553SNK9_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_24690PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	476.7643737792969	3	475.922355	1424.74524	-0.25278	-0.0001203	-1.3446	-0.00063994	-1.5974	-0.00076025	475.92205077798815	33.553	0.24792	33.553	33.384	33.632	0					6	4	2	0	0	0	0.02625	1	1555	1555		18.531	9.7317	1	13312			12995	33933	10663	10675	14114	14114					0.049853060400437244
FYLEGGFSKF	10	Unmodified	_FYLEGGFSKF_					0	0	0		ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	ENSG00000139318|ENST00000279488|DUSP6	MULTI-MSMS	OvCa99_classI_Rep5	1	597.7964477539062	2	597.795132	1193.57571	1.9187	0.001147	-1.2423	-0.00074264	0.67644	0.00040437	597.7946616183156	117.07	1.7137	117.07	116.77	118.49	0					70	36	3	0	0	0	0.12738	2	13400	13400;13424		106.68	26.97	1	2175100			12996	4765	10664	10676	14115;14116	14115					-0.013333902425074484
FYLFFVILP	9	Unmodified	_FYLFFVILP_					0	0	0		ENST00000262644.8_1_8:57871129-57871213:-|nuORF	ENST00000262644.8_1_8:57871129-57871213:-|nuORF	ENST00000262644.8_1_8:57871129-57871213:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	579.2897338867188	2	579.833529	1157.6525	-1.5441	-0.0008953	3.5258	0.0020444	1.9817	0.0011491	579.8354291316195	101.11	1.1394	100.35	100.02	101.16	-0.76401					53	22	3	0	0	0	0.027462	1	9250	9250		49.211	15.038	1	166010			12997	9897	10665	10677	14117	14117					0.0799845304459268
FYLFFVILP	9	Unmodified	_FYLFFVILP_					0	0	0		ENST00000262644.8_1_8:57871129-57871213:-|nuORF	ENST00000262644.8_1_8:57871129-57871213:-|nuORF	ENST00000262644.8_1_8:57871129-57871213:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	579.28955078125	2	579.833529	1157.6525	-1.6848	-0.0009769	4.0885	0.0023706	2.4037	0.0013937	579.8357559703468	102.03	1.2018	100.51	100.06	101.26	-1.5211					65	22	5	0	0	0	0.02744	1	6979	6979		39.021	0	1	199650			12998	9897	10665	10677	14118	14118					0.0799845304459268
FYLILKKRM	9	Unmodified	_FYLILKKRM_					0	0	0			REV__ENSG00000196498|ENST00000405201|NCOR2	REV__ENSG00000196498|ENST00000405201|NCOR2	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3692626953125	2	606.370287	1210.72602	-3.14	-0.001904	2.0035	0.0012149	-1.1365	-0.00068914	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.59983	1	14961	14961		31.955	11.958	1	257720	+		12999	22837	10666	10678	14119	14119					0.12908678215421787
FYLILKKRM	9	Unmodified	_FYLILKKRM_					0	0	0			REV__ENSG00000196498|ENST00000405201|NCOR2	REV__ENSG00000196498|ENST00000405201|NCOR2	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3685913085938	2	606.370287	1210.72602	-1.3399	-0.00081245	0.21226	0.00012871	-1.1276	-0.00068375	606.3703052098949	148.27	2.4393	146.84	145.43	147.87	-1.4351					149	49	5	0	0	0	0.65476	1	14615	14615		25.45	0.93098	1	591330	+		13000	22837	10666	10678	14120	14120					0.12908678215421787
FYLILSFV	8	Unmodified	_FYLILSFV_					0	0	0			REV__ENST00000519130.5_1_5:170337927-170338173:+|nuORF	REV__ENST00000519130.5_1_5:170337927-170338173:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	501.2905578613281	2	501.288954	1000.56336	-0.80197	-0.00040202	3.6802	0.0018448	2.8782	0.0014428	501.2906816095173	135.63	4.8104	135.4	133.71	138.52	-0.22697					221	98	3	0	0	0	0.74361	1	13489	13489		29.842	7.8817	1	70595	+		13001	27039	10667	10679	14121	14121					0.06309618085094826
FYLPSSPNL	9	Unmodified	_FYLPSSPNL_					0	0	0		ENSG00000198952|ENST00000361813|SMG5;SMG5|p.E431Rfs*10|1|0.11|ENSG00000198952|chr1:156266345-156266345|C/-|frameshift_variant	ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	MULTI-MSMS	OvCa99_classI_Rep5	1	519.268798828125	2	519.26875	1036.52295	1.2041	0.00062526	0.98164	0.00050973	2.1858	0.001135	519.2690010819158	126.98	0.66779	126.98	126.61	127.27	0					25	14	3	0	0	0	0.16524	1	14700	14700		82.305	21.333	1	331580			13002	8916	10668	10680	14122	14122					0.006146516946500924
FYLRKELITI	10	Unmodified	_FYLRKELITI_					0	0	0		ENST00000539664.2_1_7:28994760-28994901:-|nuORF	ENST00000539664.2_1_7:28994760-28994901:-|nuORF	ENST00000539664.2_1_7:28994760-28994901:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	648.362548828125	2	648.389731	1294.76491	2.6602	0.0017249	-0.7963	-0.00051632	1.8639	0.0012086	648.3886256906313	91.603	0.29227	91.603	91.502	91.794	0					9	6	2	0	0	0	0.027033	1	9863	9863		15.642	0	1	128330			13003	13441	10669	10681	14123	14123					0.12931682050793825
FYLRRRRRVH	10	Unmodified	_FYLRRRRRVH_					0	0	0		ENSG00000112996|ENST00000507110|MRPS30	ENSG00000112996|ENST00000507110|MRPS30	ENSG00000112996|ENST00000507110|MRPS30	MULTI-MSMS	OvCa9_classI_Rep3	3	487.292724609375	3	486.96036	1457.85925	-7.2825	-0.0035463	4.3524	0.0021194	-2.9301	-0.0014268	486.9623381995862	161.08	3.4384	159.71	158.52	161.96	-1.3692					219	70	4	0	0	0	0.84881	1	14102	14102		12.812	4.0124	1	133400			13004	2943	10670	10682	14124	14124					0.14863678436131522
FYLVETEDK	9	Unmodified	_FYLVETEDK_					0	0	0		ENSG00000108021|ENST00000695737|TASOR2;nc|ENSG00000108021|Q5VWN6-2|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	MULTI-MSMS	OvCa9_classI_Rep3	3	572.2816162109375	2	572.282054	1142.54956	-1.0071	-0.00057632	-0.42687	-0.00024429	-1.4339	-0.00082061	572.2816685949413	99.976	1.9549	98.291	97.726	99.681	-1.685					89	38	4	0	0	0	0.27546	1	6782	6782		65.803	1.5959	1	732180			13005	2634	10671	10683	14125	14125					-0.016017042046769348
FYMDTSHLF	9	Unmodified	_FYMDTSHLF_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	OvCa99_classI_Rep5	1	580.759521484375	2	580.757692	1159.50083	1.1422	0.00066336	1.1108	0.00064511	2.2531	0.0013085	580.75816943992	122.93	1.8823	122.93	122.49	124.37	0					97	40	4	0	0	0	0.037627	2	14161	14161;14185		128.86	57.565	1	2258400			13006	3261	10672	10684	14126;14127	14126					-0.072538960454267
FYMQLFCGAF	10	Unmodified	_FYMQLFCGAF_					0	0	0			REV__ENSG00000149133|ENST00000278409|OR5F1	REV__ENSG00000149133|ENST00000278409|OR5F1	MULTI-SECPEP	OvCa99_classI_Rep5	1	614.2944946289062	2	613.772288	1225.53002	1.3094	0.00080366	4.4282	0.0027179	5.7376	0.0035216	613.7757549280029	144.91	0.34111	144.91	144.64	144.99	0					9	6	2	0	0	0	0.026768	1	16913	16913		50.025	12.213	1	19946	+		13007	20145	10673	10685	14128	14128					-0.07372075020771263
FYNLLTRTF	9	Unmodified	_FYNLLTRTF_					0	0	0		nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;nc|ENSG00000124155|Q969N2-3|PIGT;nc|ENSG00000124155|Q969N2-2|PIGT;nc|ENSG00000124155|Q969N2-4|PIGT	nc|ENSG00000124155|Q969N2-6|PIGT	nc|ENSG00000124155|Q969N2-6|PIGT	MULTI-MSMS	OvCa99_classI_Rep5	1	587.819091796875	2	587.816399	1173.61824	2.1785	0.0012806	-0.080457	-4.7294E-05	2.0981	0.0012333	587.8163231091097	120.63	1.6534	120.63	120.47	122.13	0					67	36	3	0	0	0	0.014158	2	13863	13863;13887		155.58	70.424	1	1421100			13008	3628	10674	10686	14129;14130	14129					0.038380048857106885
FYPASAAKTL	10	Unmodified	_FYPASAAKTL_					0	0	0			REV__nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	REV__nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	MULTI-MSMS	OvCa9_classI_Rep3	3	534.7914428710938	2	534.78985	1067.56515	3.0352	0.0016232	0.018347	9.812E-06	3.0536	0.001633	534.7896759823677	56.343	2.6096	53.193	52.451	55.06	-3.1504					179	83	3	0	0	0	0.65849	1	1600	1600		35.152	5.6013	1	87189	+		13009	18955	10675	10687	14131	14131					0.034066271030496864
FYPEEKLYPM	10	Unmodified	_FYPEEKLYPM_					0	0	0			REV__ENSG00000140718|ENST00000471389|FTO	REV__ENSG00000140718|ENST00000471389|FTO	MULTI-SECPEP	OvCa99_classI_Rep5	1	439.7470397949219	3	439.545897	1315.61586	0.36718	0.00016139	-2.541	-0.0011169	-2.1739	-0.00095551	439.5449089836492	59.552	0.23398	59.552	59.452	59.686	0					9	5	2	0	0	0	0.027214	1	5141	5141		21.686	3.8526	1	176250	+		13010	19697	10676	10688	14132	14132					-0.029322116342655136
FYPLPRNHN	9	Unmodified	_FYPLPRNHN_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.2747192382812	2	579.296165	1156.57778	1.5291	0.00088583	1.5968	0.00092503	3.126	0.0018109	579.2970558208546	136.2	0.94231	136.2	135.69	136.63	0					30	19	2	0	0	0	0.027456	1	15913	15913		47.916	3.3845	1	563600			13011	9475	10677	10689	14133	14133					0.00575083285934852
FYPPKVELF	9	Unmodified	_FYPPKVELF_					0	0	0		ENSG00000128050|ENST00000512576|PAICS;nc|ENSG00000128050|P22234-2|PAICS	ENSG00000128050|ENST00000512576|PAICS	ENSG00000128050|ENST00000512576|PAICS	MULTI-MSMS	OvCa99_classI_Rep5	1	570.3119506835938	2	570.310418	1138.60628	2.1853	0.0012463	0.26236	0.00014963	2.4476	0.0013959	570.3104160088915	120.62	4.1316	120.62	119.65	123.79	0					235	92	4	0	0	0	0.27001	1	13885	13885		66.429	6.1353	1	6526800			13012	3863	10678	10690	14134	14134					0.0425238814250406
FYPYGLQTF	9	Unmodified	_FYPYGLQTF_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	OvCa99_classI_Rep5	1	568.2779541015625	2	568.276575	1134.5386	2.1011	0.001194	0.026434	1.5022E-05	2.1275	0.001209	568.2765027479891	136.61	2.2917	136.61	136.16	138.45	0					134	48	5	0	0	0	0.013645	3	15941	15917;15941;15967		157.21	68.755	1	2795500			13013	2033	10679	10691	14135;14136;14137	14136					-0.02329061788304898
FYQIRPLL	8	Unmodified	_FYQIRPLL_					0	0	0		nc|ENSG00000213859|Q693B1|KCTD11;ENSG00000213859|ENST00000333751|KCTD11	nc|ENSG00000213859|Q693B1|KCTD11	nc|ENSG00000213859|Q693B1|KCTD11	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.2514038085938	2	525.310752	1048.60695	1.8065	0.00094896	2.7304	0.0014343	4.5369	0.0023833	525.3123862485284	118	0.27295	118	117.79	118.06	0					8	5	2	0	0	0	0.028476	1	13516	13516		29.842	9.3597	1	64751			13014	9151	10680	10692	14138	14138					0.08459227582216045
FYQLIVIF	8	Unmodified	_FYQLIVIF_					0	0	0		nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4;nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4	nc|ENSG00000058668|P23634-8|ATP2B4	nc|ENSG00000058668|P23634-8|ATP2B4	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.800048828125	2	521.802229	1041.5899	-2.5661	-0.001339	-2.4379	-0.0012721	-5.004	-0.0026111	521.8006681074736	125.81	1.1354	124.4	123.83	124.97	-1.4143					49	22	3	0	0	0	0.7043	1	11958	11958		42.474	3.453	1	210200			13015	14878	10681	10693	14139	14139					0.07077306976407272
FYQPKIQQF	9	Unmodified	_FYQPKIQQF_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-MSMS	OvCa99_classI_Rep5	1	599.8189086914062	2	599.816399	1197.61824	2.7976	0.001678	0.19899	0.00011936	2.9965	0.0017974	599.8163648645872	94.089	0.93533	94.089	93.841	94.776	0					51	21	4	0	0	0	0.013607	2	10242	10220;10242		143.02	66.173	1	4657000			13016	4855	10682	10694	14140;14141	14141					0.027340048857013244
FYQRFPLSF	9	Unmodified	_FYQRFPLSF_					0	0	0		ENSG00000134109|ENST00000256497|EDEM1;ENST00000443790.1_1_3:5229490-5231099:+|nuORF	ENSG00000134109|ENST00000256497|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	MSMS	OvCa99_classI_Rep5	1	602.8109130859375	2	602.811116	1203.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.44	1	123.44	122.94	123.94	0								0	0	0	0.11106	1	14231	14231		69.628	16.276	1				13017	4261	10683	10695	14142	14142					0.014020222312637998
FYQRFPLSF	9	Unmodified	_FYQRFPLSF_					0	0	0		ENSG00000134109|ENST00000256497|EDEM1;ENST00000443790.1_1_3:5229490-5231099:+|nuORF	ENSG00000134109|ENST00000256497|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	MSMS	OvCa99_classI_Rep5	1	602.8131103515625	2	602.811116	1203.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.6	1	123.6	123.1	124.1	0								0	0	0	0.026006	1	14252	14252		122.18	28.981	1				13018	4261	10683	10695	14143	14143					0.014020222312637998
FYRALNLI	8	Unmodified	_FYRALNLI_					0	0	0			REV__nc|ENSG00000106479|O60290-2|ZNF862	REV__nc|ENSG00000106479|O60290-2|ZNF862	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.80877685546875	2	505.295102	1008.57565	-0.57915	-0.00029264	-3.6714	-0.0018551	-4.2505	-0.0021478	505.292956893411	73.35	1.0891	70.863	70.382	71.471	-2.4873					46	21	3	0	0	0	0.028476	1	3561	3561		38.806	6.8513	1	43202	+		13019	17804	10684	10696	14144	14144					0.07170654548122002
FYRGKTDK	8	Unmodified	_FYRGKTDK_					0	0	0			REV__nc|ENSG00000154839|Q96BD8-2|SKA1	REV__nc|ENSG00000154839|Q96BD8-2|SKA1	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.7927551269531	2	507.771991	1013.52943	-1.4349	-0.0007286	4.4624	0.0022659	3.0276	0.0015373	507.77418708487454	52.604	0.9859	49.792	49.394	50.38	-2.8129					40	19	3	0	0	0	0.028476	1	3534	3534		18.324	0	1	63492	+		13020	20402	10685	10697	14145	14145					0.02320589646035387
FYRLLSIV	8	Unmodified	_FYRLLSIV_					0	0	0		ENST00000561920.5_1_16:70154383-70162781:+|nuORF;PDPR|p.H811Mfs*23|1|0.02|ENSG00000090857|chr16:70156669-70156670|-/ATGGATTT|frameshift_variant;ENSG00000090857|ENST00000288050|PDPR	ENST00000561920.5_1_16:70154383-70162781:+|nuORF	ENST00000561920.5_1_16:70154383-70162781:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.8211364746094	2	505.805303	1009.59605	-0.87091	-0.00044051	-1.6938	-0.00085674	-2.5647	-0.0012973	505.8047871804939	69.46	0.19983	66.84	66.665	66.865	-2.6203					5	3	2	0	0	0	0.028476	1	5508	5508		25.45	0	1	10650			13021	1848	10686	10698	14146	14146					0.09163825207963328
FYRRITDFVIF	11	Unmodified	_FYRRITDFVIF_					0	0	0			REV__tr|A0A7D7A3E9|A0A7D7A3E9_9CLOTCysteine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=cysSPE=3SV=1	REV__tr|A0A7D7A3E9|A0A7D7A3E9_9CLOTCysteine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=cysSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.76287841796875	3	492.938117	1475.79252	-0.81701	-0.00040274	-2.5352	-0.0012497	-3.3522	-0.0016524	493.27104019803477	45.314	1.356	42.275	41.919	43.275	-3.0385					67	25	4	0	0	0	0.026321	1	2297	2297		20.03	14.618	1	161430	+		13022	32582	10687	10699	14147	14147					0.07365585311003997
FYSHLPIVY	9	Unmodified	_FYSHLPIVY_					0	0	0			REV__SH3RF2|p.I439Lfs*10|1|0.05|ENSG00000156463|chr5:146049237-146049238|-/CTGCACTCCT|frameshift_variant	REV__SH3RF2|p.I439Lfs*10|1|0.05|ENSG00000156463|chr5:146049237-146049238|-/CTGCACTCCT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	569.8003540039062	2	569.800217	1137.58588	1.103	0.00062851	-1.7817	-0.0010152	-0.6787	-0.00038672	569.7990343448866	63.792	1.3394	60.799	60.457	61.797	-2.9933					44	26	3	0	0	0	0.50066	1	2433	2433		42.474	9.662	1	44189	+		13023	29357	10688	10700	14148	14148					0.022592174826968403
FYSHLPIVY	9	Unmodified	_FYSHLPIVY_					0	0	0			REV__SH3RF2|p.I439Lfs*10|1|0.05|ENSG00000156463|chr5:146049237-146049238|-/CTGCACTCCT|frameshift_variant	REV__SH3RF2|p.I439Lfs*10|1|0.05|ENSG00000156463|chr5:146049237-146049238|-/CTGCACTCCT|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	569.800217	1137.58588	-1.69	-0.00096296	1.2168	0.00069333	-0.4732	-0.00026963	569.8008846912938	63.658	0.8896	60.914	60.48	61.369	-2.7444	0.044431	0.0024938	NaN	42.474	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31132	+		13024	29357	10688	10700							0.022592174826968403
FYSHLPIVY	9	Unmodified	_FYSHLPIVY_					0	0	0			REV__SH3RF2|p.I439Lfs*10|1|0.05|ENSG00000156463|chr5:146049237-146049238|-/CTGCACTCCT|frameshift_variant	REV__SH3RF2|p.I439Lfs*10|1|0.05|ENSG00000156463|chr5:146049237-146049238|-/CTGCACTCCT|frameshift_variant	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	569.800217	1137.58588	1.103	0.00062851	-1.7817	-0.0010152	-0.6787	-0.00038672	569.7990343448866	63.792	1.3394	60.799	60.457	61.797	-2.9933	-0.07055	-0.00092336	NaN	42.474	44	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44189	+		13025	29357	10688	10700							0.022592174826968403
FYSHLPIVY	9	Unmodified	_FYSHLPIVY_					0	0	0			REV__SH3RF2|p.I439Lfs*10|1|0.05|ENSG00000156463|chr5:146049237-146049238|-/CTGCACTCCT|frameshift_variant	REV__SH3RF2|p.I439Lfs*10|1|0.05|ENSG00000156463|chr5:146049237-146049238|-/CTGCACTCCT|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	569.800217	1137.58588	0.46739	0.00026632	-0.72613	-0.00041375	-0.25875	-0.00014743	569.7996887194197	64.37	0.9725	60.895	60.637	61.61	-3.475	0.026119	0.00027961	NaN	42.474	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179160	+		13026	29357	10688	10700							0.022592174826968403
FYSKLFQMH	9	Oxidation (M)	_FYSKLFQM(Oxidation (M))H_		FYSKLFQM(1)H		FYSKLFQM(51)H	0	0	1			REV__ENST00000486169.5_1_3:62309666-62309765:+|nuORF	REV__ENST00000486169.5_1_3:62309666-62309765:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	609.300048828125	2	608.794609	1215.57467	1.1014	0.00067054	-1.0909	-0.0006641	0.010578	6.4399E-06	608.7936363998955	157.54	2.009	157.54	156.55	158.56	0					101	40	3	0	0	0	0.40667	1	18484	18484		51.335	7.2187	1	160130	+		13027	26581	10689	10701	14149	14149		594			-0.02449927883071723
FYSKSEMQI	9	Unmodified	_FYSKSEMQI_					0	0	0		ENST00000542519.1_1_12:6782380-6787618:-|nuORF;nc|ENSG00000126746|Q8TF68-3|ZNF384;nc|ENSG00000126746|Q8TF68-2|ZNF384;nc|ENSG00000126746|Q8TF68|ZNF384;ENSG00000126746|ENST00000683879|ZNF384	ENST00000542519.1_1_12:6782380-6787618:-|nuORF	ENST00000542519.1_1_12:6782380-6787618:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	566.7684326171875	2	566.7708	1131.52705	-0.45411	-0.00025738	-3.1325	-0.0017754	-3.5866	-0.0020328	566.7688391291117	25.395	2.399	25.395	25.092	27.491	0					135	47	5	0	0	0	0.40818	1	592	592		51.193	3.2332	1	694890			13028	3795	10690	10702	14150	14150					-0.03345626873920082
FYSRLLQKF	9	Unmodified	_FYSRLLQKF_					0	0	0		ENSG00000174442|ENST00000307897|ZWILCH	ENSG00000174442|ENST00000307897|ZWILCH	ENSG00000174442|ENST00000307897|ZWILCH	MULTI-MSMS	OvCa99_classI_Rep5	1	601.3428344726562	2	601.340041	1200.66553	2.951	0.0017746	-0.48943	-0.00029431	2.4616	0.0014803	601.3396211744554	90.2	0.96838	90.2	89.848	90.816	0					61	23	5	0	0	0	0.066171	2	9650	9650;9680		104.06	51.12	1	4557600			13029	7464	10691	10703	14151;14152	14151					0.07322284156703063
FYTEWWREKRM	11	Unmodified	_FYTEWWREKRM_					0	0	0		ENST00000292599.3_1_5:179203171-179203312:+|nuORF	ENST00000292599.3_1_5:179203171-179203312:+|nuORF	ENST00000292599.3_1_5:179203171-179203312:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.5966796875	3	544.597766	1630.77147	-0.63256	-0.00034449	0.55817	0.00030398	-0.074385	-4.051E-05	544.5978491512745	21.359	1.2298	20.02	19.697	20.927	-1.3386					64	24	4	0	0	0	0.72582	1	184	184		3.4087	0	1	141150			13030	10103	10692	10704	14153	14153					-0.01868748060201142
FYTFPFQQL	9	Unmodified	_FYTFPFQQL_					0	0	0		ENSG00000139372|ENST00000392872|TDG;ENST00000544060.1_1_12:104359692-104373925:+|nuORF	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	MULTI-MSMS	OvCa99_classI_Rep5	1	595.7993774414062	2	595.797675	1189.5808	1.1354	0.00067645	1.3531	0.00080617	2.4884	0.0014826	595.7982015487263	156.62	1.3562	156.62	156.29	157.65	0					57	26	4	0	0	0	0.041116	1	18356	18356		125.81	46.101	1	436980			13031	4771	10693	10705	14154	14154					-0.006410863799146682
FYTIFKELF	9	Unmodified	_FYTIFKELF_					0	0	0		ENST00000581467.1_1_18:71816037-71822653:+|nuORF;ENSG00000075336|ENST00000169551|TIMM21	ENST00000581467.1_1_18:71816037-71822653:+|nuORF	ENST00000581467.1_1_18:71816037-71822653:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	604.8281860351562	2	604.323525	1206.6325	1.5108	0.00091298	2.2647	0.0013686	3.7755	0.0022816	604.3249832134568	146.54	0.78441	146.54	146.23	147.01	0					36	15	3	0	0	0	0.40667	1	17140	17140		51.335	10.763	1	91339			13032	1528	10694	10706	14155	14155					0.03744657313995958
FYTNIIVL	8	Unmodified	_FYTNIIVL_					0	0	0		L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|155|3|anti-sense	L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|155|3|anti-sense	L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|155|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	491.7815246582031	2	491.784036	981.553519	-0.96887	-0.00047648	-3.5823	-0.0017617	-4.5512	-0.0022382	491.7821166855375	85.065	2.7262	83.519	82.95	85.676	-1.5462					113	53	3	0	0	0	0.50747	1	7320	7320		76.774	15.802	1	636350			13033	14543	10695	10707	14156	14156					0.062004300797070755
FYTPCLVLSD	10	Unmodified	_FYTPCLVLSD_					0	0	0			REV__ENSG00000165509|ENST00000298296|MAGEC3	REV__ENSG00000165509|ENST00000298296|MAGEC3	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.3123168945312	2	579.281	1156.54745	0.49875	0.00028892	-1.1177	-0.00064743	-0.6189	-0.00035852	579.2799361560892	152.89	1.0243	152.89	152.57	153.6	0					27	22	2	0	0	0	0.026915	1	17970	17970		35.618	0	1	65461	+		13034	21095	10696	10708	14157	14157					-0.024564562141222268
FYTSVRKRSE	10	Unmodified	_FYTSVRKRSE_					0	0	0			REV__tr|A0A7D6VY20|A0A7D6VY20_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11050PE=4SV=1	REV__tr|A0A7D6VY20|A0A7D6VY20_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11050PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	636.8359985351562	2	636.838394	1271.66223	-0.69367	-0.00044175	-2.6671	-0.0016985	-3.3608	-0.0021403	636.8365212701985	41.93	1.389	38.95	38.491	39.88	-2.9804					59	26	4	0	0	0	0.68624	1	1913	1913		33.922	2.3918	1	234020	+		13035	31804	10697	10709	14158	14158					0.03726989312031037
FYTSVRKRSE	10	Unmodified	_FYTSVRKRSE_					0	0	0			REV__tr|A0A7D6VY20|A0A7D6VY20_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11050PE=4SV=1	REV__tr|A0A7D6VY20|A0A7D6VY20_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11050PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	636.838394	1271.66223	-0.0067975	-4.3289E-06	-3.1792	-0.0020246	-3.186	-0.0020289	636.8361614808185	41.544	0.68941	38.834	38.586	39.275	-2.7097	-0.057739	-0.00045237	NaN	33.922	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48502	+		13036	31804	10697	10709							0.03726989312031037
FYTSVRKRSE	10	Unmodified	_FYTSVRKRSE_					0	0	0			REV__tr|A0A7D6VY20|A0A7D6VY20_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11050PE=4SV=1	REV__tr|A0A7D6VY20|A0A7D6VY20_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11050PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	636.838394	1271.66223	-0.69367	-0.00044175	-2.6671	-0.0016985	-3.3608	-0.0021403	636.8365212701985	41.93	1.389	38.95	38.491	39.88	-2.9804	0.057739	0.00019979	NaN	33.922	59	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234020	+		13037	31804	10697	10709							0.03726989312031037
FYTVIPHNF	9	Unmodified	_FYTVIPHNF_					0	0	0		EZR-PARP3|1|fusion;ENSG00000041880|ENST00000398755|PARP3;nc|ENSG00000041880|Q9Y6F1-2|PARP3	EZR-PARP3|1|fusion	EZR-PARP3|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	569.2916870117188	2	569.290017	1136.56548	1.8598	0.0010588	-0.1076	-6.1255E-05	1.7522	0.00099751	569.2897952628529	110.19	1.34	110.19	109.9	111.24	0					76	29	5	0	0	0	0.019133	2	12496	12496;12521		148.04	81.614	1	6231900			13038	14317	10698	10710	14159;14160	14159					0.0026604682288962067
FYTVIPHNF	9	Unmodified	_FYTVIPHNF_					0	0	0		EZR-PARP3|1|fusion;ENSG00000041880|ENST00000398755|PARP3;nc|ENSG00000041880|Q9Y6F1-2|PARP3	EZR-PARP3|1|fusion	EZR-PARP3|1|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	569.290017	1136.56548	-0.3523	-0.00020056	4.8338	0.0027518	4.4815	0.0025513	569.2925649611258	110.18	0.14798	110.01	109.91	110.06	-0.17237	-0.092731	0.0051117	NaN	148.04	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3739.9			13039	14317	10698	10710							0.0026604682288962067
FYVGHIDAF	9	Unmodified	_FYVGHIDAF_					0	0	0		ENSG00000128915|ENST00000261520|ICE2;ENST00000558121.5_1_15:60715835-60734771:-|nuORF	ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	MULTI-MSMS	OvCa99_classI_Rep5	1	534.7626953125	2	534.761092	1067.50763	1.8269	0.00097698	0.31062	0.00016611	2.1376	0.0011431	534.760990122326	110.19	1.0768	110.19	109.9	110.98	0					40	23	3	0	0	0	0.17908	1	12512	12512		79.939	5.9645	1	577440			13040	3912	10699	10711	14161	14161					-0.023422151025442872
FYVKIVLD	8	Unmodified	_FYVKIVLD_					0	0	0			REV__ENST00000470741.1_1_22:43015781-43027088:-|nuORF	REV__ENST00000470741.1_1_22:43015781-43027088:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.8018798828125	2	498.791861	995.569169	1.3102	0.00065351	-3.1231	-0.0015578	-1.8129	-0.00090426	498.7899513128215	111.86	0.82687	111.86	111.47	112.3	0					28	17	3	0	0	0	0.028476	1	12684	12684		38.806	9.6566	1	296760	+		13041	17386	10700	10712	14162	14162					0.07120716596739385
FYVKLRWLLKH	11	Unmodified	_FYVKLRWLLKH_					0	0	0		nc|ENSG00000168502|Q9Y4B5|MTCL1;ENSG00000168502|ENST00000695636|MTCL1;ENST00000520495.5_1_18:8785939-8809580:+|nuORF;nc|ENSG00000168502|Q9Y4B5-4|MTCL1;nc|ENSG00000168502|Q9Y4B5-2|MTCL1;nc|ENSG00000168502|Q9Y4B5-3|MTCL1	nc|ENSG00000168502|Q9Y4B5|MTCL1	nc|ENSG00000168502|Q9Y4B5|MTCL1	MULTI-MSMS	OvCa9_classI_Rep3	3	501.63427734375	3	501.638001	1501.89217	-7.1575	-0.0035905	-0.69379	-0.00034803	-7.8513	-0.0039385	501.63774554440306	163.54	2.3462	162.14	160.37	162.72	-1.3925					135	52	3	0	0	0	0.72582	1	14187	14187		3.4087	0	1	91935			13042	6915	10701	10713	14163	14163					0.16130447715613627
FYVKVPDI	8	Unmodified	_FYVKVPDI_					0	0	0			REV__ENSG00000187676|ENST00000343307|B3GLCT	REV__ENSG00000187676|ENST00000343307|B3GLCT	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.7756042480469	2	490.776211	979.537869	-0.32966	-0.00016179	-3.824	-0.0018767	-4.1537	-0.0020385	490.77419441775845	91.729	2.1166	89.186	88.811	90.928	-2.5425					87	41	5	0	0	0	0.56113	1	7963	7963		71.378	0	1	882540	+		13043	22653	10702	10714	14164	14164					0.04728143562670084
FYVPAEPKLAF	11	Unmodified	_FYVPAEPKLAF_					0	0	0		ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF;ENST00000449200.1_1_22:40502501-40502987:-|nuORF	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MSMS	OvCa99_classI_Rep5	1	641.348388671875	2	641.347532	1280.68051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.52	1	125.52	125.02	126.02	0								0	0	0	0.12653	1	14504	14504		61.691	22.438	1				13044	5366	10703	10715	14165	14165					0.05139731234021383
FYVPAEPKLAF	11	Unmodified	_FYVPAEPKLAF_					0	0	0		ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF;ENST00000449200.1_1_22:40502501-40502987:-|nuORF	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MSMS	OvCa99_classI_Rep5	1	641.3533935546875	2	641.347532	1280.68051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.72	1	125.72	125.22	126.22	0								0	0	0	0.14817	1	14529	14529		56.434	3.4971	1				13045	5366	10703	10715	14166	14166					0.05139731234021383
FYVPRSYAI	9	Unmodified	_FYVPRSYAI_					0	0	0			REV__ENSG00000197136|ENST00000355703|PCNX3;REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	REV__ENSG00000197136|ENST00000355703|PCNX3	MULTI-MSMS	OvCa99_classI_Rep5	1	558.2992553710938	2	558.297842	1114.58113	2.7711	0.0015471	-0.5468	-0.00030528	2.2243	0.0012418	558.2975158837085	121.64	1.8468	121.64	121.34	123.18	0					95	39	3	0	0	0	0.19758	1	14023	14023		76.774	8.2894	1	4926200	+		13046	22895;17448	10704	10716	14167	14167					0.028423333399359763
FYVVIPPAL	9	Unmodified	_FYVVIPPAL_					0	0	0		nc|ENSG00000273085|Q8NGJ3|OR52E1	nc|ENSG00000273085|Q8NGJ3|OR52E1	nc|ENSG00000273085|Q8NGJ3|OR52E1	MULTI-MSMS	OvCa9_classI_Rep3	3	509.8035888671875	2	509.802229	1017.5899	-1.31	-0.00066782	4.1509	0.0021161	2.841	0.0014483	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.68641	1	11198	11198		21.702	2.3424	1	99460			13047	15371	10705	10717	14168	14168					0.08181306976405267
GAAAKVTKQ	9	Unmodified	_GAAAKVTKQ_					0	0	0			REV__ENST00000381800.3_1_12:12509572-12509644:-|nuORF	REV__ENST00000381800.3_1_12:12509572-12509644:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	437.2610168457031	2	437.261259	872.507966	-0.47486	-0.00020764	0.37967	0.00016601	-0.095196	-4.1626E-05	437.2613309968553	50.3	1.2895	47.506	47.182	48.472	-2.794					46	25	2	0	0	0	0.10363	3	3237	3237;3250;3257		96.19	5.4806	1	508810	+		13048	25205	10706	10718	14169;14170;14171	14169					0.0666120461733044
GAAAKVTKQ	9	Unmodified	_GAAAKVTKQ_					0	0	0			REV__ENST00000381800.3_1_12:12509572-12509644:-|nuORF	REV__ENST00000381800.3_1_12:12509572-12509644:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	437.2623291015625	2	437.261259	872.507966	-1.1543	-0.00050472	0.65519	0.00028649	-0.49909	-0.00021823	437.2615353408378	50.352	1.8364	47.211	46.871	48.707	-3.1416					114	35	5	0	0	0	0.083631	2	2905	2905;2929		101.6	5.4575	1	3040600	+		13049	25205	10706	10718	14172;14173	14172					0.0666120461733044
GAAAKVTKQ	9	Unmodified	_GAAAKVTKQ_					0	0	0			REV__ENST00000381800.3_1_12:12509572-12509644:-|nuORF	REV__ENST00000381800.3_1_12:12509572-12509644:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	437.261259	872.507966	-0.47486	-0.00020764	0.37967	0.00016601	-0.095196	-4.1626E-05	437.2613309968553	50.3	1.2895	47.506	47.182	48.472	-2.794	0.14734	-0.00016663	NaN	96.19	46	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	508810	+		13050	25205	10706	10718							0.0666120461733044
GAAATHLEV	9	Unmodified	_GAAATHLEV_					0	0	0		ENSG00000087111|ENST00000308360|PIGS;ENST00000577594.5_1_17:26890803-26898514:-|nuORF;PIGS-SPAG5|1|fusion	ENSG00000087111|ENST00000308360|PIGS;PIGS-SPAG5|1|fusion	PIGS-SPAG5|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	434.73077392578125	2	434.729792	867.445031	0.3946	0.00017154	-0.32841	-0.00014277	0.066189	2.8774E-05	434.72950303307067	62.309	1.1698	58.851	58.57	59.74	-3.4577					49	23	3	0	0	0	0.31747	1	4325	4325		60.972	16.855	1	275870			13051	15499;1763	10707	10719	14174	14174					0.006006388292917109
GAAATHLEV	9	Unmodified	_GAAATHLEV_					0	0	0		ENSG00000087111|ENST00000308360|PIGS;ENST00000577594.5_1_17:26890803-26898514:-|nuORF;PIGS-SPAG5|1|fusion	ENSG00000087111|ENST00000308360|PIGS;PIGS-SPAG5|1|fusion	PIGS-SPAG5|1|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	434.729792	867.445031	-1.1392	-0.00049523	1.2556	0.00054585	0.11644	5.0619E-05	434.7301934821202	61.656	1.0689	58.897	58.464	59.533	-2.7593	0.022989	0.0010437	NaN	60.972	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67794			13052	15499;1763	10707	10719							0.006006388292917109
GAAAVEPDVA	10	Unmodified	_GAAAVEPDVA_					0	0	0		chr8:144356531-144356690|111|28.72|0.05|9.19|-|2|FBXL6,None|1	chr8:144356531-144356690|111|28.72|0.05|9.19|-|2|FBXL6,None|1	chr8:144356531-144356690|111|28.72|0.05|9.19|-|2|FBXL6,None|1	MULTI-MSMS	OvCa99_classI_Rep5	1	450.2283630371094	2	450.227082	898.439611	0.76001	0.00034218	-0.63471	-0.00028576	0.12531	5.6417E-05	450.2266064045612	71.931	0.54171	71.931	71.707	72.249	0					24	12	3	0	0	0	0.35697	1	6986	6986		73.975	2.679	1	1040200			13053	540	10708	10720	14175	14175					-0.013670847532011976
GAAICLPSVK	10	Unmodified	_GAAICLPSVK_					0	0	0		ENSG00000141384|ENST00000269142|TAF4B;nc|ENSG00000141384|Q92750-2|TAF4B;ENST00000504528.2_1_4:113747508-113747850:+|nuORF	ENSG00000141384|ENST00000269142|TAF4B	ENSG00000141384|ENST00000269142|TAF4B	MULTI-MSMS	OvCa99_classI_Rep5	1	479.7752380371094	2	479.773145	957.531738	0.16685	8.0051E-05	3.4247	0.0016431	3.5915	0.0017231	479.7747160196472	32.081	0.39686	32.081	31.906	32.303	0					28	7	6	0	0	0	0.67931	1	1368	1368		32.812	4.7309	1	276460			13054	4907	10709	10721	14176	14176					0.05127302059486283
GAALAAPA	8	Unmodified	_GAALAAPA_					0	0	0		ENSG00000173457|ENST00000309318|PPP1R14B	ENSG00000173457|ENST00000309318|PPP1R14B	ENSG00000173457|ENST00000309318|PPP1R14B	MULTI-SECPEP	OvCa99_classI_Rep5	1	640.3627319335938	1	641.361702	640.354425	1.5499	0.00099405	-0.21702	-0.00013919	1.3329	0.00085486	641.3591408687508	131.01	0.237	131.01	130.91	131.15	0					5	4	2	0	0	0	0.028476	1	15215	15215		10.185	0	1	12592			13055	7379	10710	10722	14177	14177					0.0198621457165018
GAALQASVEP	10	Unmodified	_GAALQASVEP_					0	0	0		ENSG00000007520|ENST00000007390|TSR3	ENSG00000007520|ENST00000007390|TSR3	ENSG00000007520|ENST00000007390|TSR3	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.7474060058594	2	471.748182	941.481811	0.32588	0.00015373	-0.89545	-0.00042243	-0.56956	-0.00026869	471.7476954095205	117.11	2.2576	115.75	115.46	117.71	-1.3645					72	42	3	0	0	0	0.65434	1	10983	10983		35.618	0.41757	1	454660			13056	904	10711	10723	14178	14178					0.008728906551937143
GAALTAAFVFG	11	Unmodified	_GAALTAAFVFG_					0	0	0		tr|A0A553SH59|A0A553SH59_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_12175PE=3SV=1	tr|A0A553SH59|A0A553SH59_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_12175PE=3SV=1	tr|A0A553SH59|A0A553SH59_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_12175PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.94091796875	2	512.776742	1023.53893	-0.32249	-0.00016537	-3.2784	-0.0016811	-3.6009	-0.0018465	512.7746999155337	61.413	1.7588	61.413	60.153	61.912	0					74	41	3	0	0	0	0.025239	1	5282	5282		58.782	27.252	1	570900			13057	33241	10712	10724	14179	14179					0.0281035793158253
GAARALLTRA	10	Unmodified	_GAARALLTRA_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.29833984375	2	500.306532	998.598512	1.5145	0.00075774	3.1481	0.001575	4.6627	0.0023328	500.3079470221863	119.86	0.74856	119.86	119.52	120.27	0					50	17	4	0	0	0	0.026826	1	13734	13734		36.447	14.487	1	2925800	+		13058	17630	10713	10725	14180	14180					0.09915673665602753
GADFMIVK	8	Unmodified	_GADFMIVK_					0	0	0		tr|A0A553SK80|A0A553SK80_NIACIDelta-aminolevulinicaciddehydrataseOS=NialliacirculansOX=1397GN=hemBPE=3SV=1	tr|A0A553SK80|A0A553SK80_NIACIDelta-aminolevulinicaciddehydrataseOS=NialliacirculansOX=1397GN=hemBPE=3SV=1	tr|A0A553SK80|A0A553SK80_NIACIDelta-aminolevulinicaciddehydrataseOS=NialliacirculansOX=1397GN=hemBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	440.7495422363281	2	440.733489	879.452425	-1.2343	-0.00054402	-1.5405	-0.00067897	-2.7749	-0.001223	440.7331712318497	43.875	0.44631	40.867	40.641	41.088	-3.0074					10	8	2	0	0	0	0.028476	1	2117	2117		17.365	0	1	40677			13059	33590	10714	10726	14181	14181					0.007876551053527692
GADGPRASL	9	Unmodified	_GADGPRASL_					0	0	0		ENSG00000184731|ENST00000327669|FAM110C	ENSG00000184731|ENST00000327669|FAM110C	ENSG00000184731|ENST00000327669|FAM110C	MULTI-MSMS	OvCa9_classI_Rep4_	4	422.21966552734375	2	422.219591	842.42463	-0.91745	-0.00038737	0.56144	0.00023705	-0.35601	-0.00015031	422.21969858501654	51.177	1.0557	48.004	47.771	48.826	-3.1734					49	20	3	0	0	0	0.12515	1	2993	2993		90.37	8.1293	1	264640			13060	8187	10715	10727	14182	14182					-0.0028853183054025067
GADGPRASL	9	Unmodified	_GADGPRASL_					0	0	0		ENSG00000184731|ENST00000327669|FAM110C	ENSG00000184731|ENST00000327669|FAM110C	ENSG00000184731|ENST00000327669|FAM110C	MULTI-MATCH	OvCa9_classI_Rep2	2		2	422.219591	842.42463	-1.0927	-0.00046136	1.1326	0.00047819	0.039868	1.6833E-05	422.21992653644645	51.127	0.79367	48.333	48.024	48.818	-2.794	0.16432	0.00027978	NaN	90.37	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34393			13061	8187	10715	10727							-0.0028853183054025067
GADHPLVE	8	Unmodified	_GADHPLVE_					0	0	0		nc|ENSG00000147724|Q49AJ0-3|FAM135B;nc|ENSG00000147724|Q49AJ0-4|FAM135B;nc|ENSG00000147724|Q49AJ0-2|FAM135B;ENST00000482951.6_1_8:139144838-139379577:-|nuORF;ENSG00000147724|ENST00000395297|FAM135B	nc|ENSG00000147724|Q49AJ0-3|FAM135B	nc|ENSG00000147724|Q49AJ0-3|FAM135B	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.8983459472656	2	419.208692	836.402832	0.10556	4.4251E-05	2.0938	0.00087774	2.1993	0.00092199	419.2087793645727	60.183	0.59825	60.183	59.879	60.477	0					27	14	3	0	0	0	0.028476	1	5202	5202		17.365	0	1	276240			13062	5375	10716	10728	14183	14183					-0.021913365790965145
GADPDHAQ	8	Unmodified	_GADPDHAQ_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.7068786621094	2	405.672474	809.330395	0.95122	0.00038589	0.017119	6.9445E-06	0.96834	0.00039283	405.67245744085585	43.27	0.33532	43.27	43.1	43.435	0					10	7	2	0	0	0	0.028476	1	2830	2830		12.959	0	1	82672	+		13063	21178	10717	10729	14184	14184					-0.08189670652666337
GADSNQGAR	9	Unmodified	_GADSNQGAR_					0	0	0			REV__ENST00000553646.1_1_14:75375979-75376912:-|nuORF	REV__ENST00000553646.1_1_14:75375979-75376912:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	438.9144592285156	2	438.20193	874.389307	0.63572	0.00027857	2.5562	0.0011201	3.1919	0.0013987	438.20294626834055	56.074	0.41586	56.074	55.845	56.261	0					14	9	2	0	0	0	0.027462	1	4602	4602		20.947	0	1	301650	+		13064	23001	10718	10730	14185	14185					-0.05291194358323992
GAEGRVSQILA	11	Unmodified	_GAEGRVSQILA_					0	0	0			REV__TDRD10|p.H190Q|1|0.16|ENSG00000163239|chr1:154544029-154544029|T/G|missense_variant	REV__TDRD10|p.H190Q|1|0.16|ENSG00000163239|chr1:154544029-154544029|T/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.8079833984375	2	550.806562	1099.59857	-1.5163	-0.00083516	1.2958	0.00071372	-0.22048	-0.00012144	550.8071596293769	50.301	1.6918	47.159	46.663	48.355	-3.1416					106	32	4	0	0	0	0.46188	1	2907	2907		56.632	10.66	1	991970	+		13065	29490	10719	10731	14186	14186					0.05275628874960603
GAEHEDRA	8	Unmodified	_GAEHEDRA_					0	0	0		ENST00000503969.5_1_5:76383363-76414258:+|nuORF;ENST00000513591.5_1_5:76396123-76414258:+|nuORF	ENST00000503969.5_1_5:76383363-76414258:+|nuORF	ENST00000503969.5_1_5:76383363-76414258:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	442.8812255859375	2	442.696481	883.378408	0.73397	0.00032493	0.25411	0.00011249	0.98808	0.00043742	442.6965007776071	43.253	0.50764	43.253	43.1	43.608	0					23	11	3	0	0	0	0.028476	1	2864	2864		31.955	0	1	259170			13066	12871	10720	10732	14187	14187					-0.06794596732618174
GAEIVLKLPPN	11	Unmodified	_GAEIVLKLPPN_					0	0	0			REV__ENSG00000185467|ENST00000327442|KPNA7	REV__ENSG00000185467|ENST00000327442|KPNA7	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8417358398438	2	575.845156	1149.67576	-4.018	-0.0023138	0.54994	0.00031668	-3.4681	-0.0019971	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.72473	1	12056	12056		19.104	0.77911	1	445630	+		13067	22505	10721	10733	14188	14188					0.10690847091291289
GAEIVLKLPPN	11	Unmodified	_GAEIVLKLPPN_					0	0	0			REV__ENSG00000185467|ENST00000327442|KPNA7	REV__ENSG00000185467|ENST00000327442|KPNA7	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.843017578125	2	575.845156	1149.67576	-0.33973	-0.00019563	-2.5857	-0.0014889	-2.9254	-0.0016846	575.8433458482052	142.38	3.7668	140.93	139.05	142.82	-1.4532					179	72	3	0	0	0	0.69099	1	13902	13902		32.751	2.2469	1	165140	+		13068	22505	10721	10733	14189	14189					0.10690847091291289
GAEIVLKLPPN	11	Unmodified	_GAEIVLKLPPN_					0	0	0			REV__ENSG00000185467|ENST00000327442|KPNA7	REV__ENSG00000185467|ENST00000327442|KPNA7	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8429565429688	2	575.845156	1149.67576	-1.5734	-0.00090602	-1.7064	-0.00098265	-3.2798	-0.0018887	575.8439449675558	145.55	4.7888	144.12	142.78	147.57	-1.4357					360	93	6	0	0	0	0.68399	1	14404	14404		35.152	0	1	565210	+		13069	22505	10721	10733	14190	14190					0.10690847091291289
GAEVNQVKEQL	11	Unmodified	_GAEVNQVKEQL_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	OvCa9_classI_Rep4_	4	405.5531921386719	3	405.550698	1213.63027	1.581	0.00064119	2.4183	0.00098076	3.9994	0.0016219	405.5517285111878	47.869	1.8516	44.762	44.433	46.285	-3.1077					93	35	5	0	0	0	0.57194	1	2620	2620		47.228	0.7709	1	535650			13070	3897	10722	10734	14191	14191					0.031995768382330425
GAFGRVFQAR	10	Unmodified	_GAFGRVFQAR_					0	0	0		nc|ENSG00000030304|O15146-3|MUSK;nc|ENSG00000030304|O15146-2|MUSK;ENSG00000030304|ENST00000374448|MUSK	nc|ENSG00000030304|O15146-3|MUSK	nc|ENSG00000030304|O15146-3|MUSK	MULTI-SECPEP	OvCa9_classI_Rep2	2	555.7981567382812	2	554.804157	1107.59376	1.3832	0.00076739	-2.7024	-0.0014993	-1.3193	-0.00073194	554.8027277574224	66.287	0.69564	63.592	63.269	63.965	-2.6958					23	13	2	0	0	0	0.026665	1	5165	5165		34.173	20.035	1	27962			13071	1065	10723	10735	14192	14192					0.04426789522835861
GAFGRVFQAR	10	Unmodified	_GAFGRVFQAR_					0	0	0		nc|ENSG00000030304|O15146-3|MUSK;nc|ENSG00000030304|O15146-2|MUSK;ENSG00000030304|ENST00000374448|MUSK	nc|ENSG00000030304|O15146-3|MUSK	nc|ENSG00000030304|O15146-3|MUSK	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	554.804157	1107.59376	0.90041	0.00049955	-1.8508	-0.0010268	-0.95043	-0.0005273	554.8032511734839	67.123	0.84056	63.633	63.247	64.087	-3.4902	0.020679	0.00058926	NaN	19.997	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30550			13072	1065	10723	10735							0.04426789522835861
GAGEVGWGILL	11	Unmodified	_GAGEVGWGILL_					0	0	0			REV__ENST00000416671.5_1_22:29137938-29138193:-|nuORF	REV__ENST00000416671.5_1_22:29137938-29138193:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	536.2935180664062	2	536.295299	1070.57605	1.8752	0.0010056	-2.8719	-0.0015402	-0.99674	-0.00053455	536.2930420101115	77.694	0.71138	77.694	77.422	78.134	0					38	16	3	0	0	0	0.2426	1	7849	7849		74.255	2.3776	1	1991700	+		13073	25550	10724	10736	14193	14193					0.04358029477339187
GAGGAGGH	8	Unmodified	_GAGGAGGH_					0	0	0			REV__ENSG00000185818|ENST00000423729|NAT8L	REV__ENSG00000185818|ENST00000423729|NAT8L	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.3333740234375	1	583.258299	582.251023	0.5592	0.00032616	0.22423	0.00013078	0.78342	0.00045694	583.2595001008999	152.97	1.0627	152.97	152.67	153.74	0					49	21	3	0	0	0	0.028476	1	17949	17949		24.504	7.799	1	91675	+		13074	22534	10725	10737	14194	14194					-0.0568127281615034
GAGGGLGG	8	Unmodified	_GAGGGLGG_					0	0	0		ENST00000586518.1_1_17:73774674-73775034:-|nuORF	ENST00000586518.1_1_17:73774674-73775034:-|nuORF;REV__ENSG00000162040|ENST00000454677|HS3ST6	ENST00000586518.1_1_17:73774674-73775034:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.865234375	1	545.267801	544.260525	1.1666	0.00063613	-3.8997	-0.0021264	-2.7331	-0.0014903	545.2655933191035	111.41	0.31605	111.41	111.29	111.6	0					11	6	2	0	0	0	0.028476	1	12678	12678		10.185	5.0979	1	102470			13075	14046;20721	10726	10738	14195	14195					-0.029835045306185748
GAGLHVLR	8	Unmodified	_GAGLHVLR_					0	0	0			REV__chr20:63742230-63742389|211|11.99|0.4|4.92|+|1|SLC2A4RG,None|1	REV__chr20:63742230-63742389|211|11.99|0.4|4.92|+|1|SLC2A4RG,None|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.2254333496094	2	411.750862	821.487171	1.0608	0.00043678	-1.1172	-0.00046001	-0.056411	-2.3227E-05	411.7503574173247	57.193	0.43414	57.193	56.961	57.396	0					16	9	2	0	0	0	0.028476	1	4784	4784		33.516	3.674	1	328050	+		13076	16026	10727	10739	14196	14196					0.06928659028324091
GAGLILVGR	9	Unmodified	_GAGLILVGR_					0	0	0		ENST00000404733.2_1_7:150711307-150711391:-|nuORF	ENST00000404733.2_1_7:150711307-150711391:-|nuORF	ENST00000404733.2_1_7:150711307-150711391:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	429.2632141113281	2	428.27417	854.533787	-0.35218	-0.00015083	-0.2075	-8.8869E-05	-0.55968	-0.0002397	428.2740556614533	41.236	0.67375	38.255	38.075	38.748	-2.9804					25	12	4	0	0	0	0.027456	1	1819	1819		23.042	10.836	1	19560			13077	11455	10728	10740	14197	14197					0.10070098859614518
GAGVSGRGLP	10	Unmodified	_GAGVSGRGLP_					0	0	0		ENSG00000132205|ENST00000254528|EMILIN2	ENSG00000132205|ENST00000254528|EMILIN2	ENSG00000132205|ENST00000254528|EMILIN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	435.72772216796875	2	435.743234	869.471915	0.34553	0.00015056	-0.55449	-0.00024162	-0.20896	-9.1053E-05	435.7427894036838	47.961	0.65286	47.961	47.595	48.248	0					36	14	3	0	0	0	0.026553	1	3493	3493		47.657	0	1	1106400			13078	4117	10729	10741	14198	14198					0.03195747440474861
GAILFIIRLPE	11	Unmodified	_GAILFIIRLPE_					0	0	0			REV__nc|ENSG00000138613|Q8WW43-2|APH1B	REV__nc|ENSG00000138613|Q8WW43-2|APH1B	MULTI-MSMS	OvCa9_classI_Rep2	2	414.5909118652344	3	414.592058	1240.75434	0.002839	1.177E-06	-1.6525	-0.00068513	-1.6497	-0.00068395	414.5912032100085	57.072	1.3406	54.28	53.832	55.173	-2.792					73	26	3	0	0	0	0.67712	1	4055	4055		37.508	2.33	1	128050	+		13079	19547	10730	10742	14199	14199					0.14359699396368342
GAIMCSVKP	9	Carbamidomethyl (C),Oxidation (M)	_GAIM(Oxidation (M))C(Carbamidomethyl (C))SVKP_	GAIMC(1)SVKP	GAIM(1)CSVKP	GAIMC(61)SVKP	GAIM(61)CSVKP	0	1	1		nc|ENSG00000151240|Q9Y2E4-2|DIP2C;DIP2C|p.H1289Tfs*13|1|0.09|ENSG00000151240|chr10:327065-327065|G/-|frameshift_variant;ENSG00000151240|ENST00000280886|DIP2C	nc|ENSG00000151240|Q9Y2E4-2|DIP2C	nc|ENSG00000151240|Q9Y2E4-2|DIP2C	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.763916015625	2	489.740988	977.467423	-0.70194	-0.00034377	-3.0279	-0.0014829	-3.7298	-0.0018267	489.739428526598	43.225	2.2241	43.225	42.753	44.977	0					64	50	2	0	0	0	0.027279	1	2887	2887		60.972	9.6365	1	169360			13080	737	10731	10743	14200	14200	5	23			-0.02221221088962011
GAIPLVFIFAD	11	Unmodified	_GAIPLVFIFAD_					0	0	0		tr|A0A7D6VSJ2|A0A7D6VSJ2_9CLOTFlagellarbiosyntheticproteinFlhBOS=ClostridiumintestinaleOX=36845GN=flhBPE=3SV=1	tr|A0A7D6VSJ2|A0A7D6VSJ2_9CLOTFlagellarbiosyntheticproteinFlhBOS=ClostridiumintestinaleOX=36845GN=flhBPE=3SV=1	tr|A0A7D6VSJ2|A0A7D6VSJ2_9CLOTFlagellarbiosyntheticproteinFlhBOS=ClostridiumintestinaleOX=36845GN=flhBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	582.8242797851562	2	581.828975	1161.6434	-0.81752	-0.00047566	-3.2383	-0.0018841	-4.0558	-0.0023598	581.827184442026	128.08	1.5275	126.65	126.24	127.76	-1.4357					42	29	2	0	0	0	0.026187	1	12314	12314		21.96	0	1	38909			13081	35030	10732	10744	14201	14201					0.0690405968828145
GAIQLFVLQ	9	Unmodified	_GAIQLFVLQ_					0	0	0		ENST00000497497.1_1_10:119013719-119036774:+|nuORF;ENSG00000165646|ENST00000644641|SLC18A2	ENST00000497497.1_1_10:119013719-119036774:+|nuORF	ENST00000497497.1_1_10:119013719-119036774:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	494.7939147949219	2	494.794935	987.575317	0.52392	0.00025923	-0.26905	-0.00013313	0.25486	0.0001261	494.7947088763939	96.541	1.0837	95.583	95.232	96.315	-0.95857					55	21	4	0	0	0	0.50149	1	8713	8713		42.396	1.618	1	345520			13082	6583	10733	10745	14202	14202					0.08103234828263339
GAKITRLQDQ	10	Unmodified	_GAKITRLQDQ_					0	0	0		nc|ENSG00000064886|Q15782-5|CHI3L2;nc|ENSG00000064886|Q15782-6|CHI3L2;ENSG00000064886|ENST00000369748|CHI3L2	nc|ENSG00000064886|Q15782-5|CHI3L2	nc|ENSG00000064886|Q15782-5|CHI3L2	MULTI-MSMS	OvCa9_classI_Rep2	2	565.3208618164062	2	565.319837	1128.62512	-1.1079	-0.00062631	0.41281	0.00023337	-0.69507	-0.00039294	565.3199879177456	61.149	1.9033	58.39	57.777	59.68	-2.7593					114	36	4	0	0	0	0.69073	1	4549	4549		31.53	3.6476	1	380010			13083	1307	10734	10746	14203	14203					0.06595317766277731
GAKLRAPK	8	Unmodified	_GAKLRAPK_					0	0	0		ENST00000313737.5_1_12:31477768-31478254:+|nuORF	ENST00000313737.5_1_12:31477768-31478254:+|nuORF	ENST00000313737.5_1_12:31477768-31478254:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.8931579589844	2	420.774337	839.534121	0.24375	0.00010256	-0.11608	-4.8841E-05	0.12767	5.3721E-05	420.77408052813206	30.77	0.2484	30.77	30.632	30.881	0					6	4	2	0	0	0	0.028476	1	1195	1195		8.2313	0	1	11116			13084	10317	10735	10747	14204	14204					0.10793518579453121
GALDIFTIMK	10	Unmodified	_GALDIFTIMK_					0	0	0			REV__GTPBP2-VEGFA|1|fusion	REV__GTPBP2-VEGFA|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	554.8078002929688	2	554.807185	1107.59982	0.9021	0.00050049	-1.9446	-0.0010789	-1.0425	-0.0005784	554.805973456732	152.62	0.54208	152.62	152.36	152.9	0					39	14	3	0	0	0	0.6104	1	17869	17869		40.778	1.5253	1	335530	+		13085	21698	10736	10748	14205	14205					0.050321269195137575
GALKDKNFDL	10	Unmodified	_GALKDKNFDL_					0	0	0		tr|A0A553SKP1|A0A553SKP1_NIACIDeoxyribose-phosphatealdolaseOS=NialliacirculansOX=1397GN=deoCPE=3SV=1	tr|A0A553SKP1|A0A553SKP1_NIACIDeoxyribose-phosphatealdolaseOS=NialliacirculansOX=1397GN=deoCPE=3SV=1	tr|A0A553SKP1|A0A553SKP1_NIACIDeoxyribose-phosphatealdolaseOS=NialliacirculansOX=1397GN=deoCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.8020629882812	2	560.803488	1119.59242	3.0616	0.001717	-3.6261	-0.0020335	-0.56448	-0.00031656	560.8014582088352	129.77	2.693	128.31	127.94	130.63	-1.4565					149	54	4	0	0	0	0.58067	1	12583	12583		44.377	2.9506	1	2469500			13086	33637	10737	10749	14206	14206					0.03741110643431966
GALLAALPAPH	11	Unmodified	_GALLAALPAPH_					0	0	0		ENST00000302625.5_1_2:219825213-219826146:+|nuORF	ENST00000302625.5_1_2:219825213-219826146:+|nuORF	ENST00000302625.5_1_2:219825213-219826146:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.80517578125	2	515.805834	1029.59712	-1.1855	-0.00061147	-2.9289	-0.0015107	-4.1143	-0.0021222	515.804239918851	55.171	1.7783	51.924	51.439	53.218	-3.2474					69	34	4	0	0	0	0.69331	1	3453	3453		31.955	1.4512	1	658930			13087	10204	10738	10750	14207	14207					0.08350039576839663
GALLLGRRPSP	11	Unmodified	_GALLLGRRPSP_					0	0	0		ENST00000449949.5_1_21:43414155-43429688:-|nuORF	ENST00000449949.5_1_21:43414155-43429688:-|nuORF	ENST00000449949.5_1_21:43414155-43429688:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	568.84619140625	2	568.848564	1135.68258	0.54685	0.00031108	-4.2377	-0.0024106	-3.6909	-0.0020995	568.8459810585302	123.26	2.2433	121.89	120.96	123.2	-1.3666					118	44	3	0	0	0	0.65947	1	11695	11695		39.253	4.1008	1	383340			13088	12034	10739	10751	14208	14208					0.12016204762517191
GALNLQQFNKL	11	Unmodified	_GALNLQQFNKL_					0	0	0			REV__nc|ENSG00000091106|Q9NPP4-2|NLRC4	REV__nc|ENSG00000091106|Q9NPP4-2|NLRC4	MULTI-SECPEP	OvCa99_classI_Rep5	1	623.2804565429688	2	623.351137	1244.68772	0.066624	4.153E-05	0.69774	0.00043494	0.76436	0.00047647	623.3511715034615	67.386	0.31575	67.386	67.173	67.489	0					12	7	2	0	0	0	0.021649	1	6317	6317		82.241	0	1	164510	+		13089	17240	10740	10752	14209	14209					0.07516463834463138
GALPRQPVL	9	Unmodified	_GALPRQPVL_					0	0	0			REV__ENST00000525711.1_1_11:122526528-122598239:+|nuORF	REV__ENST00000525711.1_1_11:122526528-122598239:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	475.7927551269531	2	475.792727	949.5709	0.19623	9.3363E-05	-0.70421	-0.00033506	-0.50798	-0.00024169	475.79233840431397	80.375	1.3968	78.68	78.222	79.619	-1.6951					115	27	6	0	0	0	0.52083	1	6791	6791		40.573	0	1	1033700	+		13090	24128	10741	10753	14210	14210					0.09409770405375184
GALQVLEKIRE	11	Unmodified	_GALQVLEKIRE_					0	0	0		tr|A0A553SLQ5|A0A553SLQ5_NIACISugarporterfamilyMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_20950PE=3SV=1	tr|A0A553SLQ5|A0A553SLQ5_NIACISugarporterfamilyMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_20950PE=3SV=1	tr|A0A553SLQ5|A0A553SLQ5_NIACISugarporterfamilyMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_20950PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	419.24969482421875	3	419.250472	1254.72959	0.4591	0.00019248	-2.9138	-0.0012216	-2.4547	-0.0010291	419.2492162535925	32.868	0.63326	32.868	32.553	33.186	0					32	12	4	0	0	0	0.68588	1	1463	1463		34.501	1.4615	1	680620			13091	33752	10742	10754	14211	14211					0.11241019522981333
GALQVRVRDK	10	Unmodified	_GALQVRVRDK_					0	0	0			REV__tr|A0A553SKD4|A0A553SKD4_NIACIMultifunctionalfusionproteinOS=NialliacirculansOX=1397GN=secDFPE=3SV=1	REV__tr|A0A553SKD4|A0A553SKD4_NIACIMultifunctionalfusionproteinOS=NialliacirculansOX=1397GN=secDFPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	571.3425903320312	2	571.343646	1140.67274	-0.83933	-0.00047955	0.36778	0.00021013	-0.47156	-0.00026942	571.3436861071159	40.687	1.5633	37.732	37.474	39.038	-2.9541					80	29	4	0	0	0	0.6349	1	1793	1793		37.812	0.65241	1	394980	+		13092	30112	10743	10755	14212	14212					0.10803016757108708
GALSKRGL	8	Unmodified	_GALSKRGL_					0	0	0		tr|A0A553SHT8|A0A553SHT8_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_13605PE=3SV=1	tr|A0A553SHT8|A0A553SHT8_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_13605PE=3SV=1	tr|A0A553SHT8|A0A553SHT8_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_13605PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.23468017578125	2	401.250695	800.486836	0.80892	0.00032458	-0.62432	-0.00025051	0.1846	7.4072E-05	401.2503345831936	33.849	0.5323	33.849	33.533	34.065	0					26	10	3	0	0	0	0.028476	1	1602	1602		35.201	22.994	1	1341300			13093	33311	10744	10756	14213	14213					0.07861239308465429
GALTKIEKVF	10	Unmodified	_GALTKIEKVF_					0	0	0		tr|A0A553STZ8|A0A553STZ8_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06035PE=4SV=1	tr|A0A553STZ8|A0A553STZ8_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06035PE=4SV=1	tr|A0A553STZ8|A0A553STZ8_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06035PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	553.3325805664062	2	553.334424	1104.6543	-2.8766	-0.0015917	-0.88706	-0.00049084	-3.7637	-0.0020826	553.3337794849177	152.41	1.17	152.18	151.83	153	-0.22696					55	23	3	0	0	0	0.80581	1	15514	15514		18.262	0.89712	1	86016			13094	34557	10745	10757	14214	14214					0.10615462062582992
GALTPHMAQI	10	Unmodified	_GALTPHMAQI_					0	0	0			REV__PABPC3|p.D584*|1|0.32|ENSG00000151846|chr13:25097946-25097947|-/A|frameshift_variant	REV__PABPC3|p.D584*|1|0.32|ENSG00000151846|chr13:25097946-25097947|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	519.7728881835938	2	519.773677	1037.5328	1.0842	0.00056353	-0.45258	-0.00023524	0.63159	0.00032829	519.7733182741239	128.34	2.792	127.25	126.36	129.15	-1.0933					96	55	4	0	0	0	0.33376	1	10097	10097		76.774	13.468	1	251840	+		13095	20259	10746	10758	14215	14215					0.015535164283846825
GALVGPLMV	9	Unmodified	_GALVGPLMV_					0	0	0			REV__nc|ENSG00000162572|P51172-1|SCNN1D	REV__nc|ENSG00000162572|P51172-1|SCNN1D	MULTI-SECPEP	OvCa99_classI_Rep5	1	429.29620361328125	2	428.751682	855.48881	-0.0039194	-1.6804E-06	3.8779	0.0016627	3.874	0.001661	428.75324204294697	60.389	0.656	60.389	60.116	60.772	0					19	15	2	0	0	0	0.027462	1	5233	5233		39.021	22.548	1	390670	+		13096	20746	10747	10759	14216	14216					0.05528532002074371
GALVLVLY	8	Unmodified	_GALVLVLY_					0	0	0		ENSG00000151475|ENST00000281154|SLC25A31	ENSG00000151475|ENST00000281154|SLC25A31	ENSG00000151475|ENST00000281154|SLC25A31	MULTI-SECPEP	OvCa99_classI_Rep5	1	424.7585144042969	2	424.268022	846.521491	0.061506	2.6095E-05	-0.44937	-0.00019065	-0.38787	-0.00016456	424.2672811154531	47.243	0.21425	47.243	47.165	47.379	0					7	4	2	0	0	0	0.028476	1	3395	3395		10.185	1.9535	1	31353			13097	5557	10748	10760	14217	14217					0.09209062396541867
GALVRLKS	8	Unmodified	_GALVRLKS_					0	0	0		ENSG00000120708|ENST00000442011|TGFBI	ENSG00000120708|ENST00000442011|TGFBI	ENSG00000120708|ENST00000442011|TGFBI	MULTI-SECPEP	OvCa99_classI_Rep5	1	421.9194030761719	2	422.27417	842.533787	-0.337	-0.00014231	0.62297	0.00026306	0.28597	0.00012076	422.2742464152293	37.874	0.26842	37.874	37.714	37.983	0					7	5	2	0	0	0	0.028476	1	2114	2114		29.15	7.1897	1	81456			13098	3447	10749	10761	14218	14218					0.106220988596192
GALVVGKLV	9	Unmodified	_GALVVGKLV_					0	0	0		ENST00000508750.1_1_5:118788500-118792086:+|nuORF	ENST00000508750.1_1_5:118788500-118792086:+|nuORF	ENST00000508750.1_1_5:118788500-118792086:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	428.2866516113281	2	428.286746	854.558939	-0.64189	-0.00027491	0.81398	0.00034862	0.17209	7.3704E-05	428.28696961623916	106.76	1.2436	104.89	104.54	105.79	-1.8785					62	23	4	0	0	0	0.30002	1	9722	9722		62.978	8.2138	1	512020			13099	12950	10750	10762	14219	14219					0.12584153662191966
GALVVGKLV	9	Unmodified	_GALVVGKLV_					0	0	0		ENST00000508750.1_1_5:118788500-118792086:+|nuORF	ENST00000508750.1_1_5:118788500-118792086:+|nuORF	ENST00000508750.1_1_5:118788500-118792086:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	428.286746	854.558939	-0.73284	-0.00031386	0.96879	0.00041492	0.23595	0.00010106	428.2870129067913	105	1.3901	104.51	104.21	105.6	-0.48513	-0.1953	0.00040879	NaN	62.978	76	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	441820			13100	12950	10750	10762							0.12584153662191966
GAMARPPPEL	10	Unmodified	_GAMARPPPEL_					0	0	0			REV__ENST00000378567.7_1_1:1981937-1982048:+|nuORF	REV__ENST00000378567.7_1_1:1981937-1982048:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	519.7727661132812	2	519.773677	1037.5328	1.0842	0.00056353	-0.45258	-0.00023524	0.63159	0.00032829	519.7733182741239	128.34	2.792	127.25	126.36	129.15	-1.0933					96	55	4	0	0	0	0.64697	1	10092	10092		36.447	2.2742	1	251840	+		13101	25145	10751	10763	14220	14220					0.015535164283846825
GAMLPIKHII	10	Unmodified	_GAMLPIKHII_					0	0	0			REV__ENST00000454679.6_2_10:19569053-19613005:+|nuORF	REV__ENST00000454679.6_2_10:19569053-19613005:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.2642211914062	2	546.833537	1091.65252	2.2489	0.0012298	0.21062	0.00011517	2.4596	0.001345	546.8333782399504	91.774	0.38186	91.774	91.582	91.964	0					15	8	2	0	0	0	0.026802	1	9906	9906		51.335	5.3835	1	558900	+		13102	26007	10752	10764	14221	14221					0.11036129772969616
GANFLTQILL	10	Unmodified	_GANFLTQILL_					0	0	0		ENST00000466152.5_1_20:49551671-49557490:-|nuORF;ENSG00000000419|ENST00000371588|DPM1	ENST00000466152.5_1_20:49551671-49557490:-|nuORF	ENST00000466152.5_1_20:49551671-49557490:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.3156127929688	2	545.318774	1088.623	-0.51372	-0.00028014	-3.2363	-0.0017648	-3.75	-0.002045	545.3169196404446	142.63	4.7541	141.19	139.73	144.49	-1.4427					172	91	2	0	0	0	0.77039	1	14063	14063		22.58	2.5829	1	155190			13103	799	10753	10765	14222	14222					0.08222889028479585
GANKVLKV	8	Unmodified	_GANKVLKV_					0	0	0			REV__tr|A0A553SJS5|A0A553SJS5_NIACICarbonicanhydraseOS=NialliacirculansOX=1397GN=CEQ21_17335PE=3SV=1	REV__tr|A0A553SJS5|A0A553SJS5_NIACICarbonicanhydraseOS=NialliacirculansOX=1397GN=CEQ21_17335PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.6912536621094	2	414.76872	827.522887	0.067802	2.8122E-05	-0.0071191	-2.9528E-06	0.060683	2.517E-05	414.7686104727893	51.926	0.37994	51.926	51.747	52.127	0					11	8	2	0	0	0	0.028476	1	4058	4058		12.959	0.75233	1	73220	+		13104	30038	10754	10766	14223	14223					0.10222696485334382
GANLAKEFTV	10	Unmodified	_GANLAKEFTV_					0	0	0			REV__ENST00000548119.1_1_12:108931258-108931883:-|nuORF	REV__ENST00000548119.1_1_12:108931258-108931883:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.2858276367188	2	525.284931	1048.55531	-0.11003	-5.7795E-05	-0.50009	-0.00026269	-0.61012	-0.00032049	525.2846666449118	114.93	1.879	113.53	112.83	114.71	-1.3977					101	36	4	0	0	0	0.5635	1	10667	10667		46.457	0.48454	1	1115000	+		13105	16979	10755	10767	14224	14224					0.032974390976505674
GANLIKIN	8	Unmodified	_GANLIKIN_					0	0	0			REV__ENSG00000166266|ENST00000393094|CUL5	REV__ENSG00000166266|ENST00000393094|CUL5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	422.748779296875	2	421.758352	841.502152	-0.54091	-0.00022813	-0.11655	-4.9156E-05	-0.65746	-0.00027729	421.75825671493266	79.286	1.2937	76.535	76.132	77.425	-2.7514					49	26	3	0	0	0	0.028476	1	6436	6436		12.959	0	1	167990	+		13106	21171	10756	10768	14225	14225					0.07506106105665822
GANLIKIN	8	Unmodified	_GANLIKIN_					0	0	0			REV__ENSG00000166266|ENST00000393094|CUL5	REV__ENSG00000166266|ENST00000393094|CUL5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	421.758352	841.502152	0.097643	4.1182E-05	-0.025451	-1.0734E-05	0.072192	3.0448E-05	421.7582437538901	78.306	1.4738	76.566	75.987	77.46	-1.7398	0.015702	2.6074E-05	NaN	7.6903	62	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82461	+		13107	21171	10756	10768							0.07506106105665822
GANLNGPQL	9	Unmodified	_GANLNGPQL_					0	0	0		ENST00000514284.5_1_5:90675795-90675894:-|nuORF	ENST00000514284.5_1_5:90675795-90675894:-|nuORF	ENST00000514284.5_1_5:90675795-90675894:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	442.2396240234375	2	442.235242	882.45593	2.8924	0.0012791	3.6586	0.001618	6.551	0.0028971	442.2368758326559	77.809	0.91024	77.809	77.588	78.498	0					33	21	3	0	0	0	0.36502	1	7856	7856		55.504	2.1528	1	1512900			13108	13025	10757	10769	14226	14226					0.01000041203553792
GANWSDRIPFY	11	Unmodified	_GANWSDRIPFY_					0	0	0			REV__ENSG00000174917|ENST00000309324|MICOS13	REV__ENSG00000174917|ENST00000309324|MICOS13	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.27789306640625	3	442.547288	1324.62004	0.95062	0.00042069	-1.0348	-0.00045796	-0.084212	-3.7268E-05	442.54681104079265	51.278	0.6681	51.278	51.12	51.788	0					20	15	2	0	0	0	0.026033	1	3926	3926		22.562	7.8679	1	347700	+		13109	21859	10758	10770	14227	14227					-0.02928986096344488
GAPAAHGGVI	10	Unmodified	_GAPAAHGGVI_					0	0	0			REV__ENSG00000116176|ENST00000234798|TPSG1	REV__ENSG00000116176|ENST00000234798|TPSG1	MULTI-MSMS	OvCa99_classI_Rep5	1	425.2336120605469	2	425.232502	848.450451	-0.61539	-0.00026168	0.68191	0.00028997	0.066523	2.8288E-05	425.23266422376577	49.966	0.60862	49.966	49.723	50.332	0					31	13	3	0	0	0	0.73286	1	3776	3776		26.796	1.3459	1	1016400	+		13110	18288	10759	10771	14228	14228					0.020163624117685686
GAPAAHGGVI	10	Unmodified	_GAPAAHGGVI_					0	0	0			REV__ENSG00000116176|ENST00000234798|TPSG1	REV__ENSG00000116176|ENST00000234798|TPSG1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	425.232502	848.450451	-0.61539	-0.00026168	0.68191	0.00028997	0.066523	2.8288E-05	425.23266422376577	49.966	0.60862	49.966	49.723	50.332	0	0	0	NaN	26.796	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1016400	+		13111	18288	10759	10771							0.020163624117685686
GAPAAPGRC	9	Unmodified	_GAPAAPGRC_					0	0	0			REV__ENST00000433388.5_1_6:169770203-169770371:-|nuORF	REV__ENST00000433388.5_1_6:169770203-169770371:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.2305908203125	2	400.197605	798.380657	1.5239	0.00060986	3.2806	0.0013129	4.8045	0.0019227	400.2000630048302	31.312	0.58093	31.312	31.027	31.608	0					14	11	2	0	0	0	0.027462	1	1252	1252		30.504	3.7075	1	24333	+		13112	25747	10760	10772	14229	14229					-0.02659839528507746
GAPGGDLQQQV	11	Unmodified	_GAPGGDLQQQV_					0	0	0			REV__ENST00000575894.1_1_16:697724-697931:+|nuORF	REV__ENST00000575894.1_1_16:697724-697931:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.2904052734375	2	535.26727	1068.51999	-1.4296	-0.00076523	0.0016247	8.6967E-07	-1.428	-0.00076436	535.7688759381074	74.91	0.88283	72.939	72.534	73.417	-1.9711					27	16	2	0	0	0	0.025457	1	6102	6102		52.937	18.764	1	26715	+		13113	21694	10761	10773	14230	14230					-0.01153223430151229
GAPGSFIYTAL	11	Unmodified	_GAPGSFIYTAL_					0	0	0		EBF2|p.R332S|1|0.12|ENSG00000221818|chr8:25886768-25886768|C/A|missense_variant	EBF2|p.R332S|1|0.12|ENSG00000221818|chr8:25886768-25886768|C/A|missense_variant	EBF2|p.R332S|1|0.12|ENSG00000221818|chr8:25886768-25886768|C/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.788330078125	2	548.787307	1095.56006	0.69367	0.00038068	0.75851	0.00041626	1.4522	0.00079694	548.787840350563	35.594	1.9958	32.745	32.391	34.386	-2.849					120	39	4	0	0	0	0.69081	1	1197	1197		32.812	1.2826	1	883440			13114	775	10762	10774	14231	14231					0.016103232404248047
GAPGWVAVGPL	11	Unmodified	_GAPGWVAVGPL_					0	0	0			REV__ENST00000543196.6_1_12:51753021-51754538:-|nuORF	REV__ENST00000543196.6_1_12:51753021-51754538:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.8118286132812	2	512.284734	1022.55492	-1.3267	-0.00067964	-0.26616	-0.00013635	-1.5928	-0.00081599	512.2844705038801	95.413	0.85532	92.944	92.711	93.566	-2.4685					28	16	2	0	0	0	0.025652	1	8367	8367		40.573	11.423	1	100000	+		13115	27388	10763	10775	14232	14232					0.04454064168453442
GAPHRCAL	8	Unmodified	_GAPHRCAL_					0	0	0		ENST00000535378.5_1_6:24600885-24601341:-|nuORF	ENST00000535378.5_1_6:24600885-24601341:-|nuORF	ENST00000535378.5_1_6:24600885-24601341:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	412.7127380371094	2	412.713422	823.412291	-0.80466	-0.00033209	0.3213	0.00013261	-0.48335	-0.00019949	412.7134511863073	119.3	1.2808	119.13	118.81	120.09	-0.17137					50	25	3	0	0	0	0.75724	1	11477	11477		23.037	0	1	145920			13116	13373	10764	10776	14233	14233					-0.006478467745637317
GAPKCPLQ	8	Unmodified	_GAPKCPLQ_					0	0	0		ENSG00000033100|ENST00000035307|CHPF2;nc|ENSG00000033100|Q9P2E5-2|CHPF2;chr7:151236590-151237525|101|13.03|0.37|5.12|+|2|CHPF2,None|2	ENSG00000033100|ENST00000035307|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.237060546875	2	407.218006	812.421459	1.2855	0.0005235	1.5419	0.0006279	2.8275	0.0011514	407.2190018804013	57.263	0.47639	57.263	56.961	57.438	0					16	10	3	0	0	0	0.028476	1	4772	4772		40.573	7.057	1	199650			13117	1074	10765	10777	14234	14234					0.007745017911020113
GAPKESPAHPE	11	Unmodified	_GAPKESPAHPE_					0	0	0		ENST00000474361.6_1_X:1719073-1720484:+|nuORF;ENSG00000197976|ENST00000313871|AKAP17A	ENST00000474361.6_1_X:1719073-1720484:+|nuORF	ENST00000474361.6_1_X:1719073-1720484:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	560.27587890625	2	560.275095	1118.53564	0.23753	0.00013308	0.22337	0.00012515	0.4609	0.00025823	560.2751293232092	105.96	2.1264	105.52	105.15	107.27	-0.43642					121	42	5	0	0	0	0.65063	1	9862	9862		40.058	0.80534	1	1293000			13118	8769	10766	10778	14235	14235					-0.01888936913087491
GAPLFCAKLQ	10	Unmodified	_GAPLFCAKLQ_					0	0	0			REV__chr2:26402144-26407596|329|22.86|0.34|6.06|+|1|TE_info:MER49,MER49_dup152,ERV1,LTR,acceptor,+,26407596,26408136|DRC1,None|7	REV__chr2:26402144-26407596|329|22.86|0.34|6.06|+|1|TE_info:MER49,MER49_dup152,ERV1,LTR,acceptor,+,26407596,26408136|DRC1,None|7	MULTI-MSMS	OvCa99_classI_Rep5	1	524.2882690429688	2	524.28642	1046.55829	-1.062	-0.0005568	3.2034	0.0016795	2.1414	0.0011227	524.2882742456546	39.779	3.3775	39.779	39.505	42.883	0					203	76	6	0	0	0	0.59703	1	2423	2423		42.396	3.1433	1	97899000	+		13119	15998	10767	10779	14236	14236					0.03686990950814106
GAPLLLRGPAH	11	Unmodified	_GAPLLLRGPAH_					0	0	0			REV__ENST00000535191.5_1_3:52800383-52804781:-|nuORF	REV__ENST00000535191.5_1_3:52800383-52804781:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	551.32958984375	2	551.330008	1100.64546	-0.65112	-0.00035898	-1.5749	-0.0008683	-2.226	-0.0012273	551.3302081426173	42.549	0.81501	42.549	42.068	42.883	0					40	18	4	0	0	0	0.62497	1	2750	2750		42.396	3.59	1	662340	+		13120	23795	10768	10780	14237	14237					0.09916533216733114
GAPLRQYLEK	10	Unmodified	_GAPLRQYLEK_					0	0	0			REV__nc|ENSG00000090686|Q86UV5-7|USP48	REV__nc|ENSG00000090686|Q86UV5-7|USP48	MULTI-MSMS	OvCa9_classI_Rep2	2	587.8331298828125	2	587.83258	1173.65061	-1.4259	-0.00083822	4.1236	0.002424	2.6976	0.0015858	587.8349083775643	53.25	4.0724	50.436	49.985	54.058	-2.8139					184	81	4	0	0	0	0.59317	1	3642	3642		42.864	2.0861	1	898450	+		13121	17232	10769	10781	14238	14238					0.07072792288704477
GAPPCPLR	8	Unmodified	_GAPPCPLR_					0	0	0		ENST00000479851.1_1_22:32026643-32026745:-|nuORF	ENST00000479851.1_1_22:32026643-32026745:-|nuORF	ENST00000479851.1_1_22:32026643-32026745:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	405.71820068359375	2	405.718173	809.421793	-0.3042	-0.00012342	1.8181	0.00073763	1.5139	0.00061421	405.7187689414806	119.3	1.6269	119.13	118.76	120.38	-0.17137					76	32	4	0	0	0	0.75991	1	11493	11493		21.702	0	1	350390			13122	12512	10770	10782	14239	14239					0.00945921510970038
GAPQKQPQ	8	Unmodified	_GAPQKQPQ_					0	0	0		ENST00000529976.5_1_20:57288690-57289536:+|nuORF	ENST00000529976.5_1_20:57288690-57289536:+|nuORF	ENST00000529976.5_1_20:57288690-57289536:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	427.5560302734375	2	427.229959	852.445365	-0.25939	-0.00011082	0.0018569	7.9332E-07	-0.25754	-0.00011003	427.22974213257703	44.66	0.44545	44.66	44.44	44.886	0					12	9	2	0	0	0	0.028476	1	3031	3031		42.474	0	1	68723			13123	13281	10771	10783	14240	14240					0.013240585491416823
GAPVGPHAF	9	Unmodified	_GAPVGPHAF_					0	0	0		ENST00000412877.1_1_3:184079639-184080938:+|nuORF	ENST00000412877.1_1_3:184079639-184080938:+|nuORF	ENST00000412877.1_1_3:184079639-184080938:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	425.74822998046875	2	426.72177	851.428987	-0.33912	-0.00014471	-3.4423	-0.0014689	-3.7814	-0.0016136	426.720049182352	39.442	0.2594	39.442	39.287	39.547	0					7	5	2	0	0	0	0.027462	1	2304	2304		21.702	17.386	1	36411			13124	11555	10772	10784	14241	14241					-0.002670226169698253
GAPVIERVL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))GAPVIERVL_					1	0	0			REV__ENST00000277541.6_1_9:139417621-139418194:-|nuORF	REV__ENST00000277541.6_1_9:139417621-139418194:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	498.3011169433594	2	498.297842	994.581131	1.5824	0.0007885	4.0011	0.0019938	5.5835	0.0027823	498.29934150307986	135.13	1.1332	135.13	134.7	135.83	0					52	24	4	0	0	0	0.27546	1	15722	15722		65.803	12.866	1	403340	+		13125	24104	10773	10785	14242	14242					0.08362333339948691
GAPWTKVGWRF	11	Unmodified	_GAPWTKVGWRF_					0	0	0		ENST00000427455.1_2_7:35733909-35733957:-|nuORF	ENST00000427455.1_2_7:35733909-35733957:-|nuORF	ENST00000427455.1_2_7:35733909-35733957:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	435.74652099609375	3	435.568135	1303.68258	0.065048	2.8333E-05	-2.8419	-0.0012378	-2.7768	-0.0012095	435.9007102815112	56.049	0.20196	52.754	52.617	52.819	-3.2944					5	3	2	0	0	0	0.025722	1	3555	3555		21.78	0	1	5816			13126	11755	10774	10786	14243	14243					0.04288204762519854
GAQAAPERL	9	Unmodified	_GAQAAPERL_					0	0	0		ENSG00000188095|ENST00000341735|MESP2	ENSG00000188095|ENST00000341735|MESP2	ENSG00000188095|ENST00000341735|MESP2	MULTI-MSMS	OvCa99_classI_Rep5	1	456.7484130859375	2	456.748516	911.482479	-0.35055	-0.00016011	0.41396	0.00018907	0.063406	2.896E-05	456.74855904963067	29.211	0.89783	29.211	29.037	29.935	0					33	17	4	0	0	0	0.40818	1	1020	1020		51.193	1.1682	1	321010			13127	8451	10775	10787	14244	14244					0.023197300948936572
GAQCEIDKLQ	10	Unmodified	_GAQCEIDKLQ_					0	0	0			REV__L1PA11_dup257|chr1:220255199-220257096:+|1.2080698086480397|0.4810012897383803|1.33|429.0|56|3|sense	REV__L1PA11_dup257|chr1:220255199-220257096:+|1.2080698086480397|0.4810012897383803|1.33|429.0|56|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.3519287109375	2	552.771331	1103.52811	2.1351	0.0011802	0.17516	9.6823E-05	2.3102	0.001277	552.7712260309976	98.045	0.50865	98.045	97.738	98.247	0					18	11	2	0	0	0	0.026653	1	10786	10786		58.23	18.977	1	901420	+		13128	28458	10776	10788	14245	14245					-0.019514125050363873
GAQLQSARSQR	11	Unmodified	_GAQLQSARSQR_					0	0	0		CON__ENSEMBL:ENSBTAP00000023055	CON__ENSEMBL:ENSBTAP00000023055	CON__ENSEMBL:ENSBTAP00000023055	MULTI-SECPEP	OvCa99_classI_Rep5	1	601.0317993164062	2	601.323442	1200.63233	-0.63606	-0.00038248	-1.4597	-0.00087773	-2.0957	-0.0012602	601.3222671316073	26.698	0.24958	26.698	26.542	26.792	0					10	4	3	0	0	0	0.025864	1	702	702		26.063	3.4837	1	26701		+	13129	605	10777	10789	14246	14246					0.04004050366688716
GAQTVSHSQTR	11	Unmodified	_GAQTVSHSQTR_					0	0	0			REV__ENST00000443374.6_1_10:52384759-52386486:+|nuORF	REV__ENST00000443374.6_1_10:52384759-52386486:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.2962036132812	2	586.29435	1170.57415	-0.79715	-0.00046736	3.9466	0.0023139	3.1494	0.0018465	586.2965844461413	39.743	1.171	36.789	36.566	37.737	-2.9541					63	22	4	0	0	0	0.27273	1	1654	1654		70.399	17.462	1	330920	+		13130	25867	10778	10790	14247	14247					-0.004316312785931586
GAQTVSHSQTR	11	Unmodified	_GAQTVSHSQTR_					0	0	0			REV__ENST00000443374.6_1_10:52384759-52386486:+|nuORF	REV__ENST00000443374.6_1_10:52384759-52386486:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	586.29435	1170.57415	-0.74418	-0.00043631	3.9204	0.0022985	3.1762	0.0018622	586.2966207359644	39.683	0.84529	36.973	36.755	37.601	-2.7097	0.092106	-2.2236E-05	NaN	70.399	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91006	+		13131	25867	10778	10790							-0.004316312785931586
GARCRLKP	8	Unmodified	_GARCRLKP_					0	0	0		ENST00000510450.1_1_3:125688183-125696014:+|nuORF	ENST00000510450.1_1_3:125688183-125696014:+|nuORF	ENST00000510450.1_1_3:125688183-125696014:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.5716552734375	2	450.763446	899.51234	-0.43764	-0.00019727	-3.0671	-0.0013825	-3.5047	-0.0015798	450.76145012150977	49.531	0.61113	49.531	49.245	49.856	0					15	13	2	0	0	0	0.028476	1	3745	3745		31.955	8.9124	1	61374			13132	12972	10779	10791	14248	14248					0.05856390559256397
GARGQQVY	8	Unmodified	_GARGQQVY_					0	0	0			REV__ENST00000460083.1_1_3:184080267-184080848:+|nuORF	REV__ENST00000460083.1_1_3:184080267-184080848:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	440.53509521484375	2	439.727584	877.440614	1.2497	0.00054954	3.2888	0.0014462	4.5385	0.0019957	439.7289587134461	64.853	0.59935	64.853	64.631	65.231	0					24	14	2	0	0	0	0.028476	1	5975	5975		28.254	0	1	690030	+		13133	26026	10780	10792	14249	14249					-0.0030082559362654138
GARIYHTI	8	Unmodified	_GARIYHTI_					0	0	0		ENST00000539708.5_1_12:16513351-16516972:+|nuORF;ENSG00000008394|ENST00000396210|MGST1	ENST00000539708.5_1_12:16513351-16516972:+|nuORF	ENST00000539708.5_1_12:16513351-16516972:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	465.7622375488281	2	465.761426	929.5083	-0.20202	-9.4094E-05	0.49478	0.00023045	0.29276	0.00013636	465.7614827237632	56.212	0.48653	56.212	55.973	56.459	0					26	11	3	0	0	0	0.57878	1	4650	4650		68.485	15.133	1	1185600			13134	919	10781	10793	14250	14250					0.040726243371977944
GARLLGFF	8	Unmodified	_GARLLGFF_					0	0	0			REV__ENST00000483490.1_1_1:92948940-92950129:-|nuORF	REV__ENST00000483490.1_1_1:92948940-92950129:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	441.209228515625	2	440.755613	879.496673	0.040815	1.7989E-05	0.81592	0.00035962	0.85673	0.00037761	440.7560162610001	43.647	0.25888	43.647	43.565	43.823	0					6	5	2	0	0	0	0.028476	1	2909	2909		20.482	3.7769	1	18871	+		13135	26527	10782	10794	14251	14251					0.05210427313852506
GARPVSSAA	9	Unmodified	_GARPVSSAA_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa9_classI_Rep2	2	408.2221984863281	2	408.222134	814.429715	-0.027736	-1.1322E-05	0.46194	0.00018857	0.4342	0.00017725	408.22219810033897	33.657	1.3881	30.947	30.571	31.959	-2.7097					59	27	3	0	0	0	0.22621	2	1229	1217;1229		71.877	8.7966	1	367700			13136	2808	10783	10795	14252;14253	14253					0.015077720320959997
GARQLHEC	8	Unmodified	_GARQLHEC_					0	0	0			REV__CUL9|p.Y1505C|1|0.49|ENSG00000112659|chr6:43204997-43204997|A/G|missense_variant	REV__CUL9|p.Y1505C|1|0.49|ENSG00000112659|chr6:43204997-43204997|A/G|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	457.22357177734375	2	457.219069	912.423584	-1.0106	-0.00046207	-2.5411	-0.0011619	-3.5518	-0.0016239	457.2179000792043	44.088	0.39404	44.088	43.866	44.26	0					15	8	2	0	0	0	0.71369	1	2952	2952		40.573	2.7611	1	450000	+		13137	16259	10784	10796	14254	14254					-0.03613069471077779
GARSILAR	8	Unmodified	_GARSILAR_					0	0	0			REV__ENST00000569319.5_1_16:70399881-70405886:+|nuORF	REV__ENST00000569319.5_1_16:70399881-70405886:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	422.26165771484375	2	422.261594	842.508634	0.62066	0.00026208	-0.46408	-0.00019596	0.15659	6.6121E-05	422.26122982068824	35.305	0.84995	32.456	32.24	33.09	-2.849					34	16	3	0	0	0	0.73938	1	1127	1127		31.955	5.1588	1	81299	+		13138	27724	10785	10797	14255	14255					0.08108044057041752
GARSILAR	8	Unmodified	_GARSILAR_					0	0	0			REV__ENST00000569319.5_1_16:70399881-70405886:+|nuORF	REV__ENST00000569319.5_1_16:70399881-70405886:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	422.261594	842.508634	-2.0185	-0.00085233	2.05	0.00086562	0.031467	1.3287E-05	422.2623924055087	35.506	0.54938	32.797	32.602	33.152	-2.7097	0.17035	0.001571	NaN	31.955	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19782	+		13139	27724	10785	10797							0.08108044057041752
GARSILAR	8	Unmodified	_GARSILAR_					0	0	0			REV__ENST00000569319.5_1_16:70399881-70405886:+|nuORF	REV__ENST00000569319.5_1_16:70399881-70405886:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	422.261594	842.508634	0.62066	0.00026208	-0.46408	-0.00019596	0.15659	6.6121E-05	422.26122982068824	35.305	0.84995	32.456	32.24	33.09	-2.849	-0.17035	-0.00055217	NaN	31.955	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81299	+		13140	27724	10785	10797							0.08108044057041752
GASFLKSLLCI	11	Unmodified	_GASFLKSLLCI_					0	0	0		L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|156|2|anti-sense	L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|156|2|anti-sense	L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|156|2|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	576.3301391601562	2	576.328285	1150.64202	-1.1512	-0.00066349	3.9927	0.0023011	2.8415	0.0016376	576.3304978587188	34.882	0.88736	34.882	34.632	35.52	0					50	18	6	0	0	0	0.60323	1	1711	1711		44.377	0.26039	1	2246400			13141	14583	10786	10798	14256	14256					0.07272102327897301
GASGGLAGPL	10	Unmodified	_GASGGLAGPL_					0	0	0			REV__ENSG00000185950|ENST00000375856|IRS2	REV__ENSG00000185950|ENST00000375856|IRS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.2189636230469	2	400.21906	798.423567	1.3181	0.00052752	2.4874	0.00099552	3.8055	0.001523	400.22026134663764	44.909	0.31681	44.909	44.706	45.023	0					10	6	2	0	0	0	0.026892	1	3043	3043		18.324	4.5491	1	83286	+		13142	22547	10787	10799	14257	14257					0.016292538005814095
GASISHRKIHF	11	Unmodified	_GASISHRKIHF_					0	0	0			REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26	REV__nc|ENSG00000107890|Q9UPS8-2|ANKRD26	MULTI-SECPEP	OvCa9_classI_Rep4_	4	417.9169006347656	3	418.235156	1251.68364	-1.2395	-0.00051839	-0.16319	-6.8251E-05	-1.4027	-0.00058664	418.234912283568	54.661	1.1243	51.414	51.183	52.307	-3.2474					53	21	4	0	0	0	0.026033	1	3376	3376		28.577	11.41	1	272120	+		13143	28786	10788	10800	14258	14258					0.06786419131412913
GASLETVKGR	10	Unmodified	_GASLETVKGR_					0	0	0			REV__tr|A0A553SKH8|A0A553SKH8_NIACIM3familyoligoendopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_18815PE=3SV=1	REV__tr|A0A553SKH8|A0A553SKH8_NIACIM3familyoligoendopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_18815PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.2420654296875	2	509.288005	1016.56146	-0.24929	-0.00012696	3.2393	0.0016497	2.99	0.0015228	509.28938784088	59.004	0.84875	55.612	55.35	56.199	-3.392					24	16	2	0	0	0	0.026867	1	3940	3940		35.152	0	1	54172	+		13144	30129	10789	10801	14259	14259					0.05383957329195255
GASLGDGSGAE	11	Unmodified	_GASLGDGSGAE_					0	0	0		ENSG00000205189|ENST00000455036|ZBTB10;nc|ENSG00000205189|Q96DT7-2|ZBTB10;nc|ENSG00000205189|Q96DT7-3|ZBTB10	ENSG00000205189|ENST00000455036|ZBTB10	ENSG00000205189|ENST00000455036|ZBTB10	MULTI-MSMS	OvCa99_classI_Rep5	1	460.70184326171875	2	460.701429	919.388304	-0.16479	-7.5918E-05	0.94369	0.00043476	0.7789	0.00035884	460.7018105895419	22.565	4.1216	22.565	21.422	25.544	0					192	96	4	0	0	0	0.43993	2	276	276;326		58.23	4.9169	1	499350			13145	9057	10790	10802	14260;14261	14260					-0.07461453517885275
GASLGWRE	8	Unmodified	_GASLGWRE_					0	0	0		tr|A0A553SIY9|A0A553SIY9_NIACITransketolaseOS=NialliacirculansOX=1397GN=tktPE=3SV=1	tr|A0A553SIY9|A0A553SIY9_NIACITransketolaseOS=NialliacirculansOX=1397GN=tktPE=3SV=1	tr|A0A553SIY9|A0A553SIY9_NIACITransketolaseOS=NialliacirculansOX=1397GN=tktPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	437.7524719238281	2	438.222134	874.429715	0.030863	1.3525E-05	3.6368	0.0015937	3.6677	0.0016072	438.2237548463424	34.733	1.0347	34.733	34.304	35.339	0					42	21	3	0	0	0	0.028476	1	1690	1690		24.519	16.829	1	60667			13146	33442	10791	10803	14262	14262					-0.01252227967916042
GASNGSQVS	9	Unmodified	_GASNGSQVS_					0	0	0		ENST00000176763.9_1_5:171469669-171469843:-|nuORF	ENST00000176763.9_1_5:171469669-171469843:-|nuORF	ENST00000176763.9_1_5:171469669-171469843:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	403.68756103515625	2	403.685581	805.35661	1.8305	0.00073894	3.764	0.0015195	5.5945	0.0022584	403.68696861187766	45.518	0.90855	45.518	45.245	46.154	0					40	20	3	0	0	0	0.27001	1	3146	3146		66.429	7.6473	1	895780			13147	9644	10792	10804	14263	14263					-0.05385401481180452
GATPRHPP	8	Unmodified	_GATPRHPP_					0	0	0			REV__ENST00000545882.5_1_1:95391218-95391302:-|nuORF	REV__ENST00000545882.5_1_1:95391218-95391302:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.8980712890625	2	416.724844	831.435135	0.6635	0.0002765	3.2753	0.0013649	3.9388	0.0016414	416.726366904529	32.805	0.28954	32.805	32.651	32.941	0					8	5	2	0	0	0	0.028476	1	1441	1441		13.775	0.81615	1	26699	+		13148	27412	10793	10805	14264	14264					0.012674956145588112
GATRDLGDVDK	11	Unmodified	_GATRDLGDVDK_					0	0	0			REV__nc|ENSG00000044115|P35221-3|CTNNA1	REV__nc|ENSG00000044115|P35221-3|CTNNA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.8365478515625	2	573.791109	1145.56767	2.2948	0.0013167	1.5704	0.00090107	3.8652	0.0022178	573.7917838070894	84.489	0.91134	84.489	84.135	85.046	0					43	21	3	0	0	0	0.025767	1	8884	8884		37.508	12.989	1	1173400	+		13149	16647	10794	10806	14265	14265					0.0007043077002890641
GAVASRVRR	9	Unmodified	_GAVASRVRR_					0	0	0		ENST00000602755.1_1_1:109642842-109643001:+|nuORF	ENST00000602755.1_1_1:109642842-109643001:+|nuORF	ENST00000602755.1_1_1:109642842-109643001:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.77423095703125	2	486.296499	970.578445	-0.56622	-0.00027535	3.0506	0.0014835	2.4844	0.0012082	486.29761082420146	40.363	0.32516	40.363	40.154	40.479	0					11	6	2	0	0	0	0.027433	1	2435	2435		51.335	19.381	1	320780			13150	14250	10795	10807	14266	14266					0.09197922725661556
GAVIPWKS	8	Unmodified	_GAVIPWKS_					0	0	0		VRTN|p.A479V|1|0.29|ENSG00000133980|chr14:74358219-74358219|C/T|missense_variant;ENSG00000133980|ENST00000256362|VRTN	VRTN|p.A479V|1|0.29|ENSG00000133980|chr14:74358219-74358219|C/T|missense_variant	VRTN|p.A479V|1|0.29|ENSG00000133980|chr14:74358219-74358219|C/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	429.2296142578125	2	429.247621	856.480688	-0.41604	-0.00017859	-4.2999	-0.0018457	-4.716	-0.0020243	429.24585038944514	28.962	0.19895	28.962	28.838	29.037	0					5	3	2	0	0	0	0.028476	1	988	988		57.453	7.4281	1	9751			13151	4246	10796	10808	14267	14267					0.04670721076945483
GAVKPPTNKL	10	Unmodified	_GAVKPPTNKL_					0	0	0		ENSG00000164985|ENST00000380733|PSIP1;nc|ENSG00000164985|O75475-3|PSIP1;nc|ENSG00000164985|O75475-2|PSIP1;PSIP1|p.R404Gfs*8|1|0.67|ENSG00000164985|chr9:15468840-15468840|G/-|frameshift_variant;ENST00000487363.5_1_9:15485934-15510186:-|nuORF;ENST00000484265.1_1_9:15506557-15510916:-|nuORF;ENST00000488797.1_1_9:15492189-15510916:-|nuORF;ENST00000463712.6_1_9:15489396-15510916:-|nuORF	ENSG00000164985|ENST00000380733|PSIP1;ENST00000484265.1_1_9:15506557-15510916:-|nuORF	ENSG00000164985|ENST00000380733|PSIP1	MULTI-MSMS	OvCa9_classI_Rep2	2	512.81298828125	2	512.811116	1023.60768	0.47974	0.00024602	3.701	0.0018979	4.1807	0.0021439	512.8126145290439	81.852	1.5417	80.203	79.869	81.41	-1.6485					89	29	4	0	0	0	0.37436	1	6965	6965		71.877	4.9155	1	735670			13152	6509;12232	10797	10809	14268	14268					0.09682022231265819
GAVLFVFF	8	Unmodified	_GAVLFVFF_					0	0	0			REV__tr|A0A553SI20|A0A553SI20_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14035PE=3SV=1	REV__tr|A0A553SI20|A0A553SI20_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14035PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.778564453125	2	450.254914	898.495276	-0.18807	-8.4679E-05	3.6654	0.0016503	3.4773	0.0015657	450.25628023616673	37.927	0.44645	37.927	37.714	38.161	0					10	9	2	0	0	0	0.028476	1	2124	2124		24.504	2.8017	1	58106	+		13153	29858	10798	10810	14269	14269					0.041967932250940976
GAVLGLAVRVD	11	Unmodified	_GAVLGLAVRVD_					0	0	0		nc|ENSG00000157353|Q8N0W3-2|FCSK;ENSG00000157353|ENST00000288078|FCSK;ENST00000464499.5_1_16:70508533-70512710:+|nuORF	nc|ENSG00000157353|Q8N0W3-2|FCSK	nc|ENSG00000157353|Q8N0W3-2|FCSK	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.2920532226562	2	535.321848	1068.62914	-0.35313	-0.00018904	-0.0011346	-6.0736E-07	-0.35426	-0.00018964	535.3216925296686	71.108	1.0992	68.6	68.127	69.226	-2.5072					29	20	2	0	0	0	0.025315	1	5742	5742		45.972	0	1	49109			13154	5889	10799	10811	14270	14270					0.09757407259985484
GAVLQNNR	8	Unmodified	_GAVLQNNR_					0	0	0			REV__ENST00000486167.1_1_2:113875574-113887330:+|nuORF	REV__ENST00000486167.1_1_2:113875574-113887330:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	436.240966796875	2	436.240858	870.467164	0.8191	0.00035733	-0.73411	-0.00032025	0.084993	3.7078E-05	436.2404030819191	31.179	1.0266	31.179	30.979	32.006	0					42	20	4	0	0	0	0.73626	1	1259	1259		33.516	1.5607	1	935330	+		13155	19397	10800	10812	14271	14271					0.026748632977046327
GAVRGGVW	8	Unmodified	_GAVRGGVW_					0	0	0		ENST00000347528.8_2_8:41510898-41511414:-|nuORF	ENST00000347528.8_2_8:41510898-41511414:-|nuORF	ENST00000347528.8_2_8:41510898-41511414:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	401.222900390625	2	401.221937	800.429321	3.2289	0.0012955	-0.46529	-0.00018668	2.7636	0.0011088	401.2215854687907	87.28	1.1988	87.28	87.013	88.212	0					54	28	3	0	0	0	0.63104	1	9256	9256		57.453	2.688	1	2384400			13156	10631	10801	10813	14272	14272					0.021123971028941924
GAVTILPKRA	10	Unmodified	_GAVTILPKRA_					0	0	0		ENST00000480995.5_1_7:126173822-126544173:-|nuORF;nc|ENSG00000179603|O00222-3|GRM8;nc|ENSG00000179603|O00222-2|GRM8;ENSG00000179603|ENST00000339582|GRM8	ENST00000480995.5_1_7:126173822-126544173:-|nuORF	ENST00000480995.5_1_7:126173822-126544173:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	513.32666015625	2	513.326934	1024.63931	-0.96893	-0.00049738	0.75189	0.00038597	-0.21704	-0.00011141	513.3271641581543	26.967	0.49931	26.967	26.792	27.291	0					17	9	3	0	0	0	0.44431	1	755	755		62.107	10.772	1	298420			13157	7833	10802	10814	14273	14273					0.12798014985219197
GAVTLNSLFLR	11	Unmodified	_GAVTLNSLFLR_					0	0	0		ENSG00000128833|ENST00000261839|MYO5C	ENSG00000128833|ENST00000261839|MYO5C	ENSG00000128833|ENST00000261839|MYO5C	MULTI-MSMS	OvCa9_classI_Rep2	2	595.84814453125	2	595.84823	1189.68191	0.72141	0.00042985	-0.76055	-0.00045317	-0.039143	-2.3323E-05	595.8476117202922	29.509	0.77236	26.8	26.636	27.409	-2.7097					30	15	3	0	0	0	0.68757	1	711	711		33.922	2.3918	1	57389			13158	3907	10803	10815	14274	14274					0.09465365322785146
GAVTLRRRR	9	Unmodified	_GAVTLRRRR_					0	0	0		ENST00000472627.1_1_7:98718815-98741622:-|nuORF	ENST00000472627.1_1_7:98718815-98741622:-|nuORF	ENST00000472627.1_1_7:98718815-98741622:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8367309570312	2	542.844148	1083.67374	2.1012	0.0011406	2.8773	0.0015619	4.9785	0.0027025	542.8450896234708	82.794	1.0191	82.794	82.101	83.12	0					50	23	4	0	0	0	0.027462	1	8502	8502		55.504	13.03	1	1264700			13159	12396	10804	10816	14275	14275					0.13525275916686041
GAVTSILLLF	10	Unmodified	_GAVTSILLLF_					0	0	0			REV__ENSG00000185294|ENST00000329196|SPPL2C	REV__ENSG00000185294|ENST00000329196|SPPL2C	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3197021484375	2	517.318243	1032.62193	0.83877	0.00043391	2.1662	0.0011206	3.005	0.0015545	517.3191831149613	112.7	1.9244	112.58	112.28	114.2	-0.12174					94	38	4	0	0	0	0.22395	1	10666	10666		90.777	13.459	1	430350	+		13160	22492	10805	10817	14276	14276					0.10692674659571821
GAVTSILLLF	10	Unmodified	_GAVTSILLLF_					0	0	0			REV__ENSG00000185294|ENST00000329196|SPPL2C	REV__ENSG00000185294|ENST00000329196|SPPL2C	MULTI-MSMS	OvCa9_classI_Rep3	3	517.3197631835938	2	517.318243	1032.62193	1.1783	0.00060953	1.6312	0.00084385	2.8095	0.0014534	517.3188801990356	113.66	2.2198	112.59	112.25	114.47	-1.0753					98	43	4	0	0	0	0.33376	1	8377	8377		76.774	1.7308	1	525200	+		13161	22492	10805	10817	14277	14277					0.10692674659571821
GAVVGRLEAEL	11	Unmodified	_GAVVGRLEAEL_					0	0	0		ENSG00000170819|ENST00000302334|BFSP2	ENSG00000170819|ENST00000302334|BFSP2	ENSG00000170819|ENST00000302334|BFSP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.3167114257812	2	557.316763	1112.61897	1.5566	0.00086754	-0.90617	-0.00050502	0.65048	0.00036252	557.3163824775255	35.608	1.7447	32.759	32.441	34.186	-2.849					93	34	3	0	0	0	0.50928	1	1195	1195		52.937	8.5595	1	1396800			13162	7138	10806	10818	14278	14278					0.06716799534751772
GAVWGLGVDPS	11	Unmodified	_GAVWGLGVDPS_					0	0	0		ENSG00000184613|ENST00000429094|NELL2;nc|ENSG00000184613|Q99435-2|NELL2;nc|ENSG00000184613|Q99435-3|NELL2;ENST00000546415.1_1_12:45268930-45269664:-|nuORF;ENST00000547751.5_1_12:45059243-45269664:-|nuORF;NELL2|p.D685Ifs*93|1|0.04|ENSG00000184613|chr12:44522122-44522122|C/-|frameshift_variant	ENSG00000184613|ENST00000429094|NELL2	ENSG00000184613|ENST00000429094|NELL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.78076171875	2	529.269281	1056.52401	-1.6956	-0.00089742	-1.9515	-0.0010329	-3.6471	-0.0019303	529.268136049614	45.84	0.93966	42.787	42.58	43.52	-3.0535					22	17	2	0	0	0	0.025239	1	2429	2429		25.574	0	1	27518			13163	8176	10807	10819	14279	14279					-0.0019913393641672883
GAYGLALKV	9	Unmodified	_GAYGLALKV_					0	0	0		TNS2|p.P1240Lfs*67|1|0.09|ENSG00000111077|chr12:53062426-53062427|-/T|frameshift_variant;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2;nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-2|TNS2;ENST00000552168.1_1_12:53455573-53455786:+|nuORF	TNS2|p.P1240Lfs*67|1|0.09|ENSG00000111077|chr12:53062426-53062427|-/T|frameshift_variant	TNS2|p.P1240Lfs*67|1|0.09|ENSG00000111077|chr12:53062426-53062427|-/T|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	446.2703552246094	2	446.268553	890.522553	3.1804	0.0014193	-0.35443	-0.00015817	2.8259	0.0012611	446.2682714681932	94.829	0.64323	94.829	94.56	95.204	0					32	14	3	0	0	0	0.13154	2	10350	10325;10350		88.643	29.861	1	2963600			13164	2809	10808	10820	14280;14281	14281					0.07291276765454313
GAYGLAMKV	9	Unmodified	_GAYGLAMKV_					0	0	0		ENSG00000136205|ENST00000311160|TNS3;nc|ENSG00000136205|Q68CZ2-2|TNS3;nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;ENST00000490566.1_1_2:218669184-218678576:-|nuORF	ENSG00000136205|ENST00000311160|TNS3;nc|ENSG00000079308|Q9HBL0-1|TNS1	ENSG00000136205|ENST00000311160|TNS3	MULTI-MSMS	OvCa99_classI_Rep5	1	455.24847412109375	2	455.246763	908.478974	2.2093	0.0010058	0.25015	0.00011388	2.4594	0.0011197	455.2466724012267	85.47	0.9399	85.47	85.252	86.192	0					41	22	3	0	0	0	0.13154	1	8958	8958		88.643	29.861	1	2993000			13165	4471;1611	10809	10821	14282	14282					0.021073439966812657
GAYKIFVM	8	Unmodified	_GAYKIFVM_					0	0	0		ENST00000466106.1_1_17:18831958-18834008:+|nuORF;nc|ENSG00000141127|O60256-4|PRPSAP2;nc|ENSG00000141127|O60256-2|PRPSAP2;ENSG00000141127|ENST00000268835|PRPSAP2	ENST00000466106.1_1_17:18831958-18834008:+|nuORF	ENST00000466106.1_1_17:18831958-18834008:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.2918701171875	2	464.751682	927.48881	-0.20844	-9.6874E-05	3.0082	0.0013981	2.7997	0.0013012	464.7530519563691	70.525	0.4716	70.525	70.21	70.681	0					18	11	2	0	0	0	0.028476	1	6727	6727		28.254	0	1	603130			13166	4896	10810	10822	14283	14283					0.022165320020576473
GCTPQCCP	8	Unmodified	_GCTPQCCP_					0	0	0			REV__ENSG00000240542|ENST00000398470|KRTAP9-1	REV__ENSG00000240542|ENST00000398470|KRTAP9-1	MULTI-MSMS	OvCa99_classI_Rep5	1	404.6450500488281	2	404.642959	807.271366	3.0623	0.0012391	4.261	0.0017242	7.3233	0.0029633	404.64456864034935	138.07	0.52502	138.07	137.78	138.31	0					15	11	2	0	0	0	0.74595	1	16105	16105		14.664	0.88877	1	59325	+		13167	23438	10812	10823	14284	14284					-0.13997929534514242
GCVRVRRSF	9	Unmodified	_GCVRVRRSF_					0	0	0		nc|ENSG00000082684|Q9P283-4|SEMA5B	nc|ENSG00000082684|Q9P283-4|SEMA5B	nc|ENSG00000082684|Q9P283-4|SEMA5B	MULTI-MSMS	OvCa9_classI_Rep2	2	540.2976684570312	2	540.298185	1078.58182	-1.8908	-0.0010216	1.5096	0.00081564	-0.38116	-0.00020594	540.2989536670705	38.535	2.9688	35.825	35.469	38.438	-2.7097					158	59	5	0	0	0	0.62352	1	1875	1875		29.15	0	1	1380400			13168	14904	10813	10824	14285	14285					0.04566849508000814
GDALWHEV	8	Unmodified	_GDALWHEV_					0	0	0		ENST00000533766.5_1_11:64880615-64882334:+|nuORF	ENST00000533766.5_1_11:64880615-64882334:+|nuORF	ENST00000533766.5_1_11:64880615-64882334:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	463.2539367675781	2	463.721967	925.429381	-0.093691	-4.3447E-05	-3.0685	-0.0014229	-3.1622	-0.0014664	463.7208516451845	56.559	0.28307	56.559	56.34	56.623	0					9	6	2	0	0	0	0.028476	1	4669	4669		23.042	3.6825	1	422910			13169	13346	10814	10825	14286	14286					-0.03631647687768691
GDAWPSHKT	9	Unmodified	_GDAWPSHKT_					0	0	0			REV__ENSG00000158859|ENST00000367996|ADAMTS4	REV__ENSG00000158859|ENST00000367996|ADAMTS4	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.25244140625	2	499.738148	997.461744	-0.48482	-0.00024228	1.4076	0.00070342	0.92276	0.00046114	499.74027957178885	38.995	0.27044	38.995	38.836	39.107	0					8	5	2	0	0	0	0.027462	1	2249	2249		31.53	3.6476	1	37626	+		13170	20586	10815	10826	14287	14287					-0.03708860284768889
GDGEDLAGVLN	11	Unmodified	_GDGEDLAGVLN_					0	0	0			REV__ENSG00000198142|ENST00000356454|SOWAHC	REV__ENSG00000198142|ENST00000356454|SOWAHC	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2883911132812	2	530.251286	1058.48802	2.6154	0.0013868	-3.2116	-0.0017029	-0.59611	-0.00031609	530.2495124816799	100.74	0.86932	100.74	100.49	101.36	0					31	20	2	0	0	0	0.025605	1	11252	11252		46.457	17.287	1	1074600	+		13171	22993	10816	10827	14288	14288					-0.03888635903922477
GDGRPLLR	8	Unmodified	_GDGRPLLR_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	OvCa99_classI_Rep5	1	442.2584228515625	2	442.259051	882.503549	1.1347	0.00050183	-1.4559	-0.00064388	-0.32121	-0.00014206	442.25829877725744	45.057	0.49179	45.057	44.84	45.332	0					24	10	3	0	0	0	0.73205	1	3089	3089		35.618	3.6634	1	517770	+		13172	19832	10817	10828	14289	14289					0.057597401944121884
GDGTFRKIKR	10	Unmodified	_GDGTFRKIKR_					0	0	0		nc|ENSG00000140600|Q99963-4|SH3GL3	nc|ENSG00000140600|Q99963-4|SH3GL3	nc|ENSG00000140600|Q99963-4|SH3GL3	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3427734375	2	589.343646	1176.67274	-5.1334	-0.0030254	3.8974	0.0022969	-1.236	-0.00072842	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.66721	1	12644	12644		34.173	7.4796	1	589610			13173	15056	10818	10829	14290	14290					0.09147016757151505
GDGVTDVLLV	10	Unmodified	_GDGVTDVLLV_					0	0	0		ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	MULTI-SECPEP	OvCa9_classI_Rep2	2	494.7660827636719	2	494.27149	986.528426	0.71473	0.00035327	4.0046	0.0019794	4.7194	0.0023327	494.27175971527	70.815	0.51018	68.244	67.916	68.426	-2.5707					16	9	2	0	0	0	0.026915	1	5664	5664		20.947	0	1	21324			13174	4619	10819	10830	14291	14291					0.03462330486479459
GDIANERFFF	10	Unmodified	_GDIANERFFF_					0	0	0			REV__ENSG00000075213|ENST00000265362|SEMA3A	REV__ENSG00000075213|ENST00000265362|SEMA3A	MULTI-MSMS	OvCa9_classI_Rep3	3	608.296630859375	2	608.293288	1214.57202	3.6539	0.0022227	1.966	0.0011959	5.6199	0.0034186	608.2942855637167	59.026	3.3501	55.911	55.036	58.386	-3.1147					203	93	3	0	0	0	0.42962	1	1891	1891		64.207	2.0999	1	283460	+		13175	16962	10820	10831	14292	14292					-0.026680600163899726
GDILLKVAAIL	11	Unmodified	_GDILLKVAAIL_					0	0	0		ENSG00000155666|ENST00000286096|KDM8;nc|ENSG00000155666|Q8N371-3|KDM8;nc|ENSG00000155666|Q8N371-2|KDM8;ENST00000562269.1_1_16:27214862-27222526:+|nuORF	ENSG00000155666|ENST00000286096|KDM8	ENSG00000155666|ENST00000286096|KDM8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.3525390625	2	563.365724	1124.7169	0.82231	0.00046326	3.3702	0.0018986	4.1925	0.0023619	563.3667832112787	117.48	0.36452	116.14	115.9	116.26	-1.3444					12	6	3	0	0	0	0.023945	1	10994	10994		77.318	0	1	20833			13176	5796	10821	10832	14293	14293					0.15952608130760382
GDKPTLVTLL	10	Unmodified	_GDKPTLVTLL_					0	0	0		sp|Q6SWA0|UL31_HCMVMProteinUL31OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL31PE=3SV=1;sp|P16848|UL31_HCMVAProteinUL31OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL31PE=1SV=2	sp|Q6SWA0|UL31_HCMVMProteinUL31OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL31PE=3SV=1	sp|Q6SWA0|UL31_HCMVMProteinUL31OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL31PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.8180541992188	2	528.818607	1055.62266	0.74463	0.00039377	-0.83544	-0.0004418	-0.090816	-4.8025E-05	528.8181216301339	138.8	0.89726	137.27	137.01	137.91	-1.5284					29	17	2	0	0	0	0.65849	1	13539	13539		35.152	2.3396	1	48587			13177	32905	10822	10833	14294	14294					0.09707469308636973
GDKYWRVQS	9	Unmodified	_GDKYWRVQS_					0	0	0			REV__nc|ENSG00000124006|O75147-4|OBSL1	REV__nc|ENSG00000124006|O75147-4|OBSL1	MULTI-MSMS	OvCa99_classI_Rep5	1	569.783203125	2	569.78563	1137.55671	-0.56711	-0.00032313	-4.4363	-0.0025277	-5.0034	-0.0028509	569.7829539665157	35.172	0.56239	35.172	34.957	35.52	0					29	11	4	0	0	0	0.10502	1	1754	1754		95.815	7.6382	1	595890	+		13178	18659	10823	10834	14295	14295					-0.0065692681357631955
GDKYWRVQS	9	Unmodified	_GDKYWRVQS_					0	0	0			REV__nc|ENSG00000124006|O75147-4|OBSL1	REV__nc|ENSG00000124006|O75147-4|OBSL1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	569.78563	1137.55671	-0.56711	-0.00032313	-4.4363	-0.0025277	-5.0034	-0.0028509	569.7829539665157	35.172	0.56239	35.172	34.957	35.52	0	0	0	NaN	95.815	29	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	595890	+		13179	18659	10823	10834							-0.0065692681357631955
GDLEATVAQQP	11	Unmodified	_GDLEATVAQQP_					0	0	0		tr|A0A553STJ5|A0A553STJ5_NIACIRiboseABCtransportersubstrate-bindingproteinRbsBOS=NialliacirculansOX=1397GN=rbsBPE=3SV=1	tr|A0A553STJ5|A0A553STJ5_NIACIRiboseABCtransportersubstrate-bindingproteinRbsBOS=NialliacirculansOX=1397GN=rbsBPE=3SV=1	tr|A0A553STJ5|A0A553STJ5_NIACIRiboseABCtransportersubstrate-bindingproteinRbsBOS=NialliacirculansOX=1397GN=rbsBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.3516845703125	2	564.78021	1127.54587	3.92	0.0022139	2.5305	0.0014292	6.4505	0.0036431	564.7816778980208	135.37	0.5936	133.82	133.61	134.2	-1.5437					19	11	2	0	0	0	0.026172	1	13088	13088		24.519	0	1	21755			13180	34496	10824	10835	14296	14296					-0.01280373978534044
GDLEATVAQQP	11	Unmodified	_GDLEATVAQQP_					0	0	0		tr|A0A553STJ5|A0A553STJ5_NIACIRiboseABCtransportersubstrate-bindingproteinRbsBOS=NialliacirculansOX=1397GN=rbsBPE=3SV=1	tr|A0A553STJ5|A0A553STJ5_NIACIRiboseABCtransportersubstrate-bindingproteinRbsBOS=NialliacirculansOX=1397GN=rbsBPE=3SV=1	tr|A0A553STJ5|A0A553STJ5_NIACIRiboseABCtransportersubstrate-bindingproteinRbsBOS=NialliacirculansOX=1397GN=rbsBPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	564.78021	1127.54587	0.16863	9.5239E-05	7.5094	0.0042411	7.678	0.0043364	564.7841721478912	134.3	0.34215	134.07	133.9	134.25	-0.22696	0.12522	0.0038602	NaN	24.519	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17443			13181	34496	10824	10835							-0.01280373978534044
GDLNSENQVF	10	Unmodified	_GDLNSENQVF_					0	0	0			REV__tr|A0A553SKB7|A0A553SKB7_NIACISingle-stranded-DNA-specificexonucleaseRecJOS=NialliacirculansOX=1397GN=recJPE=3SV=1	REV__tr|A0A553SKB7|A0A553SKB7_NIACISingle-stranded-DNA-specificexonucleaseRecJOS=NialliacirculansOX=1397GN=recJPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	561.7586059570312	2	561.756735	1121.49892	1.0872	0.00061075	1.9941	0.0011202	3.0813	0.001731	561.757717613742	63.682	3.3714	60.689	60	63.371	-2.9933					120	66	3	0	0	0	0.73063	1	2414	2414		27.047	1.4733	1	89773	+		13182	30106	10825	10836	14297	14297					-0.056972335296677556
GDLRIETY	8	Unmodified	_GDLRIETY_					0	0	0			REV__PKDREJ|p.H2048Tfs*3|1|0.05|ENSG00000130943|chr22:46257182-46257182|A/-|frameshift_variant	REV__PKDREJ|p.H2048Tfs*3|1|0.05|ENSG00000130943|chr22:46257182-46257182|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	483.29296875	2	483.748182	965.481811	-0.85808	-0.00041509	0.53552	0.00025905	-0.32256	-0.00015604	483.7484537450071	94.452	0.70743	92.557	92.307	93.014	-1.8956					26	13	3	0	0	0	0.028476	1	6136	6136		45.952	1.8352	1	70762	+		13183	18984	10826	10837	14298	14298					-0.0023110934480428114
GDPLRGTANL	10	Unmodified	_GDPLRGTANL_					0	0	0		nc|ENSG00000198053|P78324-4|SIRPA;ENSG00000198053|ENST00000358771|SIRPA;nc|ENSG00000198053|P78324-2|SIRPA;nc|ENSG00000089012|Q9P1W8-4|SIRPG;nc|ENSG00000089012|Q9P1W8-2|SIRPG;ENSG00000089012|ENST00000303415|SIRPG;nc|ENSG00000101307|Q5TFQ8|SIRPB1;ENSG00000101307|ENST00000381605|SIRPB1	nc|ENSG00000198053|P78324-4|SIRPA	nc|ENSG00000198053|P78324-4|SIRPA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.8121337890625	2	507.272355	1012.53016	0.32423	0.00016447	3.4024	0.0017259	3.7266	0.0018904	507.27265201487364	89.898	0.20061	87.323	87.198	87.399	-2.575					6	3	2	0	0	0	0.026573	1	7716	7716		53.089	0	1	7977			13184	8777	10827	10838	14299	14299					0.024393842950985345
GDQIFNKSKKL	11	Unmodified	_GDQIFNKSKKL_					0	0	0		ENSG00000084764|ENST00000233121|MAPRE3	ENSG00000084764|ENST00000233121|MAPRE3	ENSG00000084764|ENST00000233121|MAPRE3	MULTI-MSMS	OvCa9_classI_Rep4_	4	639.3642578125	2	639.364244	1276.71394	-4.0344	-0.0025795	2.2611	0.0014457	-1.7733	-0.0011338	639.3655564998056	154.53	1.1695	153.08	152.77	153.94	-1.4516					91	28	4	0	0	0	0.69099	1	15300	15300		32.751	6.0576	1	586460			13185	1721	10828	10839	14300	14300					0.08664733005934977
GDQIFNKSKKL	11	Unmodified	_GDQIFNKSKKL_					0	0	0		ENSG00000084764|ENST00000233121|MAPRE3	ENSG00000084764|ENST00000233121|MAPRE3	ENSG00000084764|ENST00000233121|MAPRE3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	639.364244	1276.71394	-5.452	-0.0034858	3.9427	0.0025208	-1.5093	-0.000965	639.3665055521415	154.09	1.0359	153.08	152.82	153.86	-1.0076	-0.0017942	0.001558	NaN	32.751	52	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87645			13186	1721	10828	10839							0.08664733005934977
GDRARPPE	8	Unmodified	_GDRARPPE_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	449.75335693359375	2	449.230491	896.446428	-0.043144	-1.9382E-05	-0.79028	-0.00035502	-0.83342	-0.0003744	449.23012955643657	39.388	0.43987	39.388	39.107	39.547	0					14	9	2	0	0	0	0.028476	1	2285	2285		30.504	12.179	1	84881			13187	9552	10829	10840	14301	14301					-0.0059372708195724044
GDRNIIRI	8	Unmodified	_GDRNIIRI_					0	0	0		ENSG00000196663|ENST00000359520|TECPR2;nc|ENSG00000196663|O15040-2|TECPR2;TECPR2|p.S766Pfs*6|1|0.06|ENSG00000196663|chr14:102435113-102435113|T/-|frameshift_variant;TECPR2|p.S415Lfs*18|1|0.15|ENSG00000196663|chr14:102431952-102431953|-/T|frameshift_variant	ENSG00000196663|ENST00000359520|TECPR2	ENSG00000196663|ENST00000359520|TECPR2	MULTI-MSMS	OvCa9_classI_Rep3	3	478.7853088378906	2	478.785433	955.556313	-3.0173	-0.0014446	2.9044	0.0013906	-0.11287	-5.4041E-05	478.78669233564773	146.16	1.5937	145.21	144.8	146.39	-0.95947					82	31	4	0	0	0	0.74229	1	12269	12269		30.504	0	1	384210			13188	8640	10830	10841	14302	14302					0.07675698257230579
GDRNVLLII	9	Unmodified	_GDRNVLLII_					0	0	0			REV__tr|A0A553SLW5|A0A553SLW5_NIACISensordomain-containingdiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_21415PE=4SV=1	REV__tr|A0A553SLW5|A0A553SLW5_NIACISensordomain-containingdiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_21415PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.8124694824219	2	506.811116	1011.60768	0.31561	0.00015995	-1.485	-0.00075259	-1.1694	-0.00059264	506.81045586251577	89.749	2.4253	87.174	86.704	89.129	-2.575					167	47	5	0	0	0	0.21395	1	7693	7693		73.975	2.0973	1	8441000	+		13189	30271	10831	10842	14303	14303					0.10234022231293238
GDSDSDDDDD	10	Unmodified	_GDSDSDDDDD_					0	0	0			REV__nc|ENSG00000127952|Q9Y6J8-2|STYXL1	REV__nc|ENSG00000127952|Q9Y6J8-2|STYXL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.31689453125	2	528.14962	1054.28469	-1.0805	-0.00057066	2.3556	0.0012441	1.2751	0.00067346	528.6546450731623	65.947	0.30557	65.947	65.79	66.096	0					10	7	3	0	0	0	0.02725	1	6100	6100		15.642	0	1	111420	+		13190	18833	10832	10843	14304	14304					-0.24028450206878915
GDSLVALVLL	10	Unmodified	_GDSLVALVLL_					0	0	0			REV__ENSG00000196497|ENST00000354464|IPO4;REV__ENST00000558780.5_2_14:24651254-24657791:-|nuORF	REV__ENST00000558780.5_2_14:24651254-24657791:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	500.3077392578125	2	500.307875	998.601197	0.45654	0.00022841	-0.95662	-0.0004786	-0.50007	-0.00025019	500.3072384549448	160.94	0.95584	160.94	160.61	161.56	0					45	18	4	0	0	0	0.43592	1	18854	18854		63.306	3.188	1	594550	+		13191	22836;27589	10833	10844	14305	14305					0.10184084279887884
GDSNPGFDG	9	Unmodified	_GDSNPGFDG_					0	0	0			REV__ENST00000593431.1_1_19:50016657-50028245:+|nuORF	REV__ENST00000593431.1_1_19:50016657-50028245:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1719055175781	2	433.169764	864.324976	2.6506	0.0011482	1.0551	0.00045706	3.7058	0.0016052	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.60342	1	1924	1924		31.53	0	1	60065	+		13192	17688	10834	10845	14306	14306					-0.11261394235123134
GDSNVVKLQRI	11	Unmodified	_GDSNVVKLQRI_					0	0	0		VWF|p.D2509Gfs*24|1|0.03|ENSG00000110799|chr12:5971621-5971622|-/C|frameshift_variant;ENSG00000110799|ENST00000261405|VWF	VWF|p.D2509Gfs*24|1|0.03|ENSG00000110799|chr12:5971621-5971622|-/C|frameshift_variant	VWF|p.D2509Gfs*24|1|0.03|ENSG00000110799|chr12:5971621-5971622|-/C|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	410.23883056640625	3	410.238455	1227.69353	0.70292	0.00028836	-0.73139	-0.00030004	-0.028475	-1.1682E-05	410.23810044283476	48.007	0.52075	48.007	47.812	48.332	0					19	11	2	0	0	0	0.1126	1	3499	3499		94.409	10.762	1	1013600			13193	2794	10835	10846	14307	14307					0.08879562346146486
GDSWAGTGD	9	Unmodified	_GDSWAGTGD_					0	0	0		ENSG00000196440|ENST00000423738|ARMCX4	ENSG00000196440|ENST00000423738|ARMCX4	ENSG00000196440|ENST00000423738|ARMCX4	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1716003417969	2	433.169764	864.324976	2.6506	0.0011482	1.0551	0.00045706	3.7058	0.0016052	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.56889	2	1619	1619;2055		35.618	0.41757	1	60065			13194	8609	10836	10847	14308;14309	14308					-0.11261394235134503
GDTFQPKLN	9	Unmodified	_GDTFQPKLN_					0	0	0			REV__HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|127|3|sense	REV__HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|127|3|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	510.2607421875	2	510.261456	1018.50836	-0.47405	-0.00024189	-4.4409	-0.002266	-4.915	-0.0025079	510.25989654431504	24.844	0.50482	24.844	24.687	25.192	0					15	9	3	0	0	0	0.63422	1	505	505		27.882	3.6795	1	23456	+		13195	28268	10837	10848	14310	14310					-0.00015420453473780071
GDTFQPKLN	9	Unmodified	_GDTFQPKLN_					0	0	0			REV__HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|127|3|sense	REV__HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|127|3|sense	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	510.261456	1018.50836	-0.47405	-0.00024189	-4.4409	-0.002266	-4.915	-0.0025079	510.25989654431504	24.844	0.50482	24.844	24.687	25.192	0	0	0	NaN	27.882	15	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23456	+		13196	28268	10837	10848							-0.00015420453473780071
GDVIGPLPPE	10	Unmodified	_GDVIGPLPPE_					0	0	0		ENSG00000154781|ENST00000383794|CCDC174;CNOT2-C3orf19|1|fusion	ENSG00000154781|ENST00000383794|CCDC174;CNOT2-C3orf19|1|fusion	ENSG00000154781|ENST00000383794|CCDC174	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.25537109375	2	497.266207	992.517862	-0.54521	-0.00027111	0.6348	0.00031566	0.089588	4.4549E-05	497.2659444514003	67.861	0.78171	67.861	67.255	68.037	0					24	19	2	0	0	0	0.026665	1	6348	6348		19.997	0	1	393860			13197	5754;589	10838	10849	14311	14311					0.021303478320419345
GDVLGLEKL	9	Unmodified	_GDVLGLEKL_					0	0	0			REV__nc|ENSG00000144744|Q8TBC4-2|UBA3	REV__nc|ENSG00000144744|Q8TBC4-2|UBA3	MULTI-MSMS	OvCa9_classI_Rep2	2	472.27642822265625	2	472.276575	942.538597	-1.6702	-0.00078878	1.0716	0.00050608	-0.59858	-0.0002827	472.27695122025665	85.276	2.3741	83.785	83.209	85.583	-1.4906					96	46	4	0	0	0	0.14855	1	7351	7351		85.161	0.2453	1	441980	+		13198	19932	10839	10850	14312	14312					0.06502938211713172
GDVLKFSCRK	10	Unmodified	_GDVLKFSCRK_					0	0	0		ENSG00000134389|ENST00000256785|CFHR5	ENSG00000134389|ENST00000256785|CFHR5	ENSG00000134389|ENST00000256785|CFHR5	MULTI-MSMS	OvCa9_classI_Rep2	2	576.8143310546875	2	576.813333	1151.61211	2.8486	0.0016431	0.39435	0.00022747	3.2429	0.0018706	576.8135000601841	25.468	0.7966	22.758	22.579	23.376	-2.7097					36	18	3	0	0	0	0.65849	1	257	257		35.152	2.3396	1	58707			13199	4293	10840	10851	14313	14313					0.04237163382526887
GDYIRTGFIN	10	Unmodified	_GDYIRTGFIN_					0	0	0		ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1;ENST00000473552.1_1_X:153991228-153994704:+|nuORF	ENSG00000130826|ENST00000369550|DKC1	ENSG00000130826|ENST00000369550|DKC1	MULTI-MSMS	OvCa9_classI_Rep3	3	578.28857421875	2	578.293288	1154.57202	-7.6021	-0.0043963	1.2846	0.00074285	-6.3176	-0.0036534	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.75313	1	13654	13654		24.519	0.99649	1	1429200			13200	4020	10841	10852	14314	14314					0.0009193998364480649
GEAAKREIL	9	Unmodified	_GEAAKREIL_					0	0	0		ENSG00000204569|ENST00000376511|PPP1R10	ENSG00000204569|ENST00000376511|PPP1R10	ENSG00000204569|ENST00000376511|PPP1R10	MULTI-MSMS	OvCa99_classI_Rep5	1	493.7850341796875	2	493.785099	985.555644	-0.65655	-0.00032419	0.14149	6.9863E-05	-0.51506	-0.00025433	493.78506424789936	40.317	0.55936	40.317	40.106	40.666	0					26	11	3	0	0	0	0.29519	1	2441	2441		63.534	3.4156	1	1170000			13201	9003	10842	10853	14315	14315					0.06228858817530636
GEAAKSVKL	9	Unmodified	_GEAAKSVKL_					0	0	0		ENSG00000189334|ENST00000344616|S100A14	ENSG00000189334|ENST00000344616|S100A14	ENSG00000189334|ENST00000344616|S100A14	MSMS	OvCa99_classI_Rep5	1	451.7688903808594	2	451.768917	901.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.822	1	37.822	37.322	38.322	0								0	0	0	0.11106	1	2102	2102		69.628	0	1				13202	8549	10843	10854	14316	14316					0.06858071414524147
GEAARAGHF	9	Unmodified	_GEAARAGHF_					0	0	0		nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19	nc|ENSG00000172046|O94966-4|USP19	nc|ENSG00000172046|O94966-4|USP19	MULTI-MSMS	OvCa99_classI_Rep5	1	458.22454833984375	2	458.225208	914.435863	-0.37767	-0.00017306	0.2634	0.0001207	-0.11427	-5.2361E-05	458.22522714679155	29.308	0.64817	29.308	29.087	29.735	0					22	12	3	0	0	0	0.63108	1	1040	1040		28.254	4.0515	1	173260			13203	15179	10844	10855	14317	14317					-0.024777097363880785
GEADEAELQRL	11	Unmodified	_GEADEAELQRL_					0	0	0		ENSG00000150779|ENST00000504148|TIMM8B	ENSG00000150779|ENST00000504148|TIMM8B	ENSG00000150779|ENST00000504148|TIMM8B	MULTI-MSMS	OvCa99_classI_Rep5	1	615.8050537109375	2	615.801674	1229.58879	1.7829	0.0010979	-0.06548	-4.0323E-05	1.7175	0.0010576	615.8018329130938	77.775	0.67237	77.775	77.461	78.134	0					35	15	4	0	0	0	0.048622	2	7853	7853;7866		122.94	54.093	1	2159100			13204	5519	10845	10856	14318;14319	14318					-0.016816039211107636
GEADERVSEL	10	Unmodified	_GEADERVSEL_					0	0	0		ENSG00000178988|ENST00000320848|MRFAP1L1	ENSG00000178988|ENST00000320848|MRFAP1L1	ENSG00000178988|ENST00000320848|MRFAP1L1	MULTI-MSMS	OvCa99_classI_Rep5	1	552.7638549804688	2	552.762017	1103.50948	-0.26836	-0.00014834	0.012677	7.0075E-06	-0.25568	-0.00014133	552.7618869098568	61.105	0.80988	61.105	60.816	61.626	0					43	18	4	0	0	0	0.0512	1	5366	5366		128.6	16.495	1	2249700			13205	7790	10846	10857	14320	14320					-0.0381325087521418
GEAFDGARDM	10	Oxidation (M)	_GEAFDGARDM(Oxidation (M))_		GEAFDGARDM(1)		GEAFDGARDM(130)	0	0	1		ENSG00000134339|ENST00000256733|SAA2;ENSG00000173432|ENST00000356524|SAA1;nc|ENSG00000134339|P0DJI9-2|SAA2	ENSG00000134339|ENST00000256733|SAA2	ENSG00000134339|ENST00000256733|SAA2	MULTI-MSMS	OvCa9_classI_Rep2	2	542.7211303710938	2	542.721838	1083.42912	-1.5057	-0.00081719	1.2982	0.00070455	-0.20755	-0.00011264	542.7224141285893	49.537	1.8316	46.777	46.375	48.206	-2.7603					87	36	4	0	0	0	0.0512	5	3143	3139;3143;3149;3155;3162		128.6	62.173	1	524680			13206	4287	10847	10858	14321;14322;14323;14324;14325	14322		139			-0.10925435469948752
GEAFDGARDM	10	Oxidation (M)	_GEAFDGARDM(Oxidation (M))_		GEAFDGARDM(1)		GEAFDGARDM(170)	0	0	1		ENSG00000134339|ENST00000256733|SAA2;ENSG00000173432|ENST00000356524|SAA1;nc|ENSG00000134339|P0DJI9-2|SAA2	ENSG00000134339|ENST00000256733|SAA2	ENSG00000134339|ENST00000256733|SAA2	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.7229614257812	2	542.721838	1083.42912	-2.653	-0.0014399	1.9401	0.001053	-0.71289	-0.0003869	542.7229010241664	49.315	1.8181	46.174	45.884	47.702	-3.1416					105	34	4	0	0	0	0.0016064	7	2780	2758;2767;2780;2792;2806;2817;2830		173.39	93.679	1	2807600			13207	4287	10847	10858	14326;14327;14328;14329;14330;14331;14332	14328		139			-0.10925435469948752
GEAFDGARDM	10	Unmodified	_GEAFDGARDM_					0	0	0		ENSG00000134339|ENST00000256733|SAA2;ENSG00000173432|ENST00000356524|SAA1;nc|ENSG00000134339|P0DJI9-2|SAA2	ENSG00000134339|ENST00000256733|SAA2	ENSG00000134339|ENST00000256733|SAA2	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.7254638671875	2	534.724381	1067.43421	-1.8837	-0.0010073	1.576	0.00084272	-0.30772	-0.00016455	534.7251853342484	66.155	2.061	62.665	62.174	64.235	-3.4902					104	41	4	0	0	0	2.6939E-07	4	4795	4783;4795;4808;4820		213.85	117.66	1	2979900			13208	4287	10847	10859	14333;14334;14335;14336	14334					-0.09681131607317184
GEAFFFKGK	9	Unmodified	_GEAFFFKGK_					0	0	0		nc|ENSG00000198598|Q9ULZ9-2|MMP17;ENSG00000198598|ENST00000360564|MMP17	nc|ENSG00000198598|Q9ULZ9-2|MMP17	nc|ENSG00000198598|Q9ULZ9-2|MMP17	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.2810668945312	2	515.77146	1029.52837	0.80792	0.0004167	3.2905	0.0016972	4.0984	0.0021139	515.7734998461968	68.086	0.68127	64.595	64.284	64.965	-3.4902					24	13	3	0	0	0	0.027441	1	5075	5075		37.159	0	1	99532			13209	8833	10848	10860	14337	14337					0.01478375277156374
GEAGLHFDEL	10	Unmodified	_GEAGLHFDEL_					0	0	0		nc|ENSG00000109083|Q8IY31-4|IFT20;ENST00000322326.12_1_17:26657393-26659262:-|nuORF;ENSG00000109083|ENST00000395418|IFT20;ENST00000582797.5_1_17:26657393-26662483:-|nuORF;nc|ENSG00000109083|Q8IY31-3|IFT20;nc|ENSG00000109083|Q8IY31-2|IFT20;ENST00000578547.1_1_17:26658777-26659262:-|nuORF;ENST00000580357.1_1_17:26658777-26662483:-|nuORF;ENST00000580991.1_1_17:26658777-26662483:-|nuORF	nc|ENSG00000109083|Q8IY31-4|IFT20	nc|ENSG00000109083|Q8IY31-4|IFT20	MULTI-MSMS	OvCa99_classI_Rep5	1	544.2577514648438	2	544.256371	1086.49819	2.7925	0.0015198	-0.34893	-0.00018991	2.4435	0.0013299	544.2560882620156	99.169	0.56969	99.169	98.877	99.447	0					39	13	4	0	0	0	0.044571	1	10940	10940		131.03	66.824	1	4074600			13210	2696	10849	10861	14338	14338					-0.04160028178716857
GEAGLHFDEL	10	Unmodified	_GEAGLHFDEL_					0	0	0		nc|ENSG00000109083|Q8IY31-4|IFT20;ENST00000322326.12_1_17:26657393-26659262:-|nuORF;ENSG00000109083|ENST00000395418|IFT20;ENST00000582797.5_1_17:26657393-26662483:-|nuORF;nc|ENSG00000109083|Q8IY31-3|IFT20;nc|ENSG00000109083|Q8IY31-2|IFT20;ENST00000578547.1_1_17:26658777-26659262:-|nuORF;ENST00000580357.1_1_17:26658777-26662483:-|nuORF;ENST00000580991.1_1_17:26658777-26662483:-|nuORF	nc|ENSG00000109083|Q8IY31-4|IFT20	nc|ENSG00000109083|Q8IY31-4|IFT20	MULTI-MATCH	OvCa9_classI_Rep2	2		2	544.256371	1086.49819	-1.2776	-0.00069535	0.79872	0.00043471	-0.47889	-0.00026064	544.2567479936487	100.37	0.89307	99.538	99.261	100.15	-0.83051	0.13545	0.00059316	NaN	131.03	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92756			13211	2696	10849	10861							-0.04160028178716857
GEAGLHFDEL	10	Unmodified	_GEAGLHFDEL_					0	0	0		nc|ENSG00000109083|Q8IY31-4|IFT20;ENST00000322326.12_1_17:26657393-26659262:-|nuORF;ENSG00000109083|ENST00000395418|IFT20;ENST00000582797.5_1_17:26657393-26662483:-|nuORF;nc|ENSG00000109083|Q8IY31-3|IFT20;nc|ENSG00000109083|Q8IY31-2|IFT20;ENST00000578547.1_1_17:26658777-26659262:-|nuORF;ENST00000580357.1_1_17:26658777-26662483:-|nuORF;ENST00000580991.1_1_17:26658777-26662483:-|nuORF	nc|ENSG00000109083|Q8IY31-4|IFT20	nc|ENSG00000109083|Q8IY31-4|IFT20	MULTI-MATCH	OvCa9_classI_Rep3	3		2	544.256371	1086.49819	-0.96313	-0.00052419	0.96452	0.00052494	0.0013839	7.5317E-07	544.2567173388863	101.08	1.0441	99.477	99.243	100.29	-1.6053	0.074096	0.00077363	NaN	131.03	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122460			13212	2696	10849	10861							-0.04160028178716857
GEAGLHFDEL	10	Unmodified	_GEAGLHFDEL_					0	0	0		nc|ENSG00000109083|Q8IY31-4|IFT20;ENST00000322326.12_1_17:26657393-26659262:-|nuORF;ENSG00000109083|ENST00000395418|IFT20;ENST00000582797.5_1_17:26657393-26662483:-|nuORF;nc|ENSG00000109083|Q8IY31-3|IFT20;nc|ENSG00000109083|Q8IY31-2|IFT20;ENST00000578547.1_1_17:26658777-26659262:-|nuORF;ENST00000580357.1_1_17:26658777-26662483:-|nuORF;ENST00000580991.1_1_17:26658777-26662483:-|nuORF	nc|ENSG00000109083|Q8IY31-4|IFT20	nc|ENSG00000109083|Q8IY31-4|IFT20	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	544.256371	1086.49819	-0.88807	-0.00048334	0.48998	0.00026668	-0.39809	-0.00021666	544.2564407789496	101.69	1.0209	99.427	99.113	100.13	-2.2665	0.023929	0.0002571	NaN	131.03	41	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129390			13213	2696	10849	10861							-0.04160028178716857
GEAGPIHHL	9	Unmodified	_GEAGPIHHL_					0	0	0		nc|ENSG00000116337|Q01433-4|AMPD2;nc|ENSG00000116337|Q01433-5|AMPD2;nc|ENSG00000116337|Q01433-2|AMPD2;ENSG00000116337|ENST00000528667|AMPD2	nc|ENSG00000116337|Q01433-4|AMPD2	nc|ENSG00000116337|Q01433-4|AMPD2	MULTI-MSMS	OvCa99_classI_Rep5	1	465.7444763183594	2	465.743234	929.471915	-0.48407	-0.00022545	0.27949	0.00013017	-0.20458	-9.5281E-05	465.743245191869	43.372	0.81022	43.372	43.185	43.995	0					36	18	3	0	0	0	0.21078	1	2857	2857		74.517	11.538	1	1626000			13214	14980	10850	10862	14339	14339					0.004357474404741879
GEAIDRSLL	9	Unmodified	_GEAIDRSLL_					0	0	0		nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B	nc|ENSG00000158290|Q13620-3|CUL4B	nc|ENSG00000158290|Q13620-3|CUL4B	MULTI-MSMS	OvCa99_classI_Rep5	1	487.2712707519531	2	487.269281	972.52401	1.9046	0.00092805	-0.0017979	-8.7606E-07	1.9028	0.00092717	487.269303684088	82.119	0.86609	82.119	81.613	82.479	0					45	20	4	0	0	0	0.2077	1	8480	8480		75.043	3.6654	1	2364800			13215	5942	10851	10863	14340	14340					0.03664866063570571
GEAKVKKQLV	10	Unmodified	_GEAKVKKQLV_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.3449096679688	2	550.345323	1098.67609	0.85243	0.00046913	-1.1693	-0.00064354	-0.3169	-0.00017441	550.3445389502896	36.811	1.2461	33.918	33.695	34.941	-2.8925					67	24	4	0	0	0	0.5635	1	1310	1310		46.457	2.0796	1	399920			13216	3744	10852	10864	14341	14341					0.1307026681113257
GEALPHVVPTL	11	Unmodified	_GEALPHVVPTL_					0	0	0		ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENST00000491496.1_1_7:803580-810256:+|nuORF	ENSG00000164818|ENST00000297440|DNAAF5	ENSG00000164818|ENST00000297440|DNAAF5	MULTI-MSMS	OvCa9_classI_Rep2	2	566.8216552734375	2	566.821681	1131.62881	-0.081433	-4.6158E-05	-0.42243	-0.00023944	-0.50386	-0.0002856	566.8213564088927	107.28	1.2705	106.97	106.62	107.89	-0.30836					74	25	4	0	0	0	0.04578	6	10003	10003;10008;10012;10018;10024;10039		145.16	73.278	1	533140			13217	6489	10853	10865	14342;14343;14344;14345;14346;14347	14342					0.06825987540150891
GEALPHVVPTL	11	Unmodified	_GEALPHVVPTL_					0	0	0		ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENST00000491496.1_1_7:803580-810256:+|nuORF	ENSG00000164818|ENST00000297440|DNAAF5	ENSG00000164818|ENST00000297440|DNAAF5	MULTI-MSMS	OvCa9_classI_Rep3	3	566.8214111328125	2	566.821681	1131.62881	-0.044661	-2.5315E-05	-0.25615	-0.00014519	-0.30081	-0.0001705	566.8214690269949	108.1	1.2874	106.9	106.53	107.82	-1.1978					67	23	4	0	0	0	0.055405	6	7716	7700;7703;7710;7716;7723;7730		112.41	59.474	1	648130			13218	6489	10853	10865	14348;14349;14350;14351;14352;14353	14351					0.06825987540150891
GEALPHVVPTL	11	Unmodified	_GEALPHVVPTL_					0	0	0		ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5;ENST00000491496.1_1_7:803580-810256:+|nuORF	ENSG00000164818|ENST00000297440|DNAAF5	ENSG00000164818|ENST00000297440|DNAAF5	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.8224487304688	2	566.821681	1131.62881	-0.77687	-0.00044035	0.35945	0.00020374	-0.41743	-0.00023661	566.821739739191	108.62	1.324	106.89	106.57	107.89	-1.7256					68	25	4	0	0	0	0.11855	4	9939	9939;9950;9963;9975		93.143	40.207	1	655320			13219	6489	10853	10865	14354;14355;14356;14357	14354					0.06825987540150891
GEALRVLGL	9	Unmodified	_GEALRVLGL_					0	0	0		ENST00000453604.6_1_19:11516043-11529954:-|nuORF	ENST00000453604.6_1_19:11516043-11529954:-|nuORF	ENST00000453604.6_1_19:11516043-11529954:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	464.2608947753906	2	464.284734	926.554916	-0.56101	-0.00026047	-1.2023	-0.00055819	-1.7633	-0.00081866	464.283607376666	78.348	0.75404	75.995	75.497	76.251	-2.3527					25	14	3	0	0	0	0.027402	1	4179	4179		56.721	0	1	20552			13220	12074	10854	10866	14358	14358					0.08870064168456793
GEALVRHDEF	10	Unmodified	_GEALVRHDEF_					0	0	0		nc|ENSG00000128595|O43852-15|CALU;nc|ENSG00000128595|O43852-2|CALU;ENSG00000128595|ENST00000249364|CALU;nc|ENSG00000128595|O43852-4|CALU;nc|ENSG00000128595|O43852-3|CALU;nc|ENSG00000128595|O43852-9|CALU;nc|ENSG00000128595|O43852-8|CALU;nc|ENSG00000128595|O43852-5|CALU;nc|ENSG00000128595|O43852-6|CALU	nc|ENSG00000128595|O43852-15|CALU	nc|ENSG00000128595|O43852-15|CALU	MULTI-MSMS	OvCa99_classI_Rep5	1	586.789794921875	2	586.78837	1171.56219	-0.07	-4.1075E-05	-0.032507	-1.9075E-05	-0.10251	-6.015E-05	586.7882846229901	58.328	0.78212	58.328	58.069	58.852	0					46	18	3	0	0	0	0.49342	1	4940	4940		55.084	8.6271	1	4208400			13221	3891	10855	10867	14359	14359					-0.016732480217797274
GEALVRHDEF	10	Unmodified	_GEALVRHDEF_					0	0	0		nc|ENSG00000128595|O43852-15|CALU;nc|ENSG00000128595|O43852-2|CALU;ENSG00000128595|ENST00000249364|CALU;nc|ENSG00000128595|O43852-4|CALU;nc|ENSG00000128595|O43852-3|CALU;nc|ENSG00000128595|O43852-9|CALU;nc|ENSG00000128595|O43852-8|CALU;nc|ENSG00000128595|O43852-5|CALU;nc|ENSG00000128595|O43852-6|CALU	nc|ENSG00000128595|O43852-15|CALU	nc|ENSG00000128595|O43852-15|CALU	MULTI-MSMS	OvCa9_classI_Rep2	2	586.7877807617188	2	586.78837	1171.56219	-1.8442	-0.0010822	1.2828	0.00075274	-0.56138	-0.00032941	586.7890662323969	62.07	2.0506	59.311	58.777	60.827	-2.7593					109	39	4	0	0	0	0.31125	7	4643	4627;4632;4637;4643;4657;4663;4669		79.489	34.912	1	690190			13222	3891	10855	10867	14360;14361;14362;14363;14364;14365;14366	14363					-0.016732480217797274
GEALVRHDEF	10	Unmodified	_GEALVRHDEF_					0	0	0		nc|ENSG00000128595|O43852-15|CALU;nc|ENSG00000128595|O43852-2|CALU;ENSG00000128595|ENST00000249364|CALU;nc|ENSG00000128595|O43852-4|CALU;nc|ENSG00000128595|O43852-3|CALU;nc|ENSG00000128595|O43852-9|CALU;nc|ENSG00000128595|O43852-8|CALU;nc|ENSG00000128595|O43852-5|CALU;nc|ENSG00000128595|O43852-6|CALU	nc|ENSG00000128595|O43852-15|CALU	nc|ENSG00000128595|O43852-15|CALU	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.7890014648438	2	586.78837	1171.56219	-0.79673	-0.00046751	0.17473	0.00010253	-0.622	-0.00036498	586.788453794369	62.869	1.3495	59.411	59.061	60.41	-3.4577					88	27	5	0	0	0	0.37132	6	4427	4379;4387;4399;4415;4427;4439		72.243	22.293	1	2136200			13223	3891	10855	10867	14367;14368;14369;14370;14371;14372	14371					-0.016732480217797274
GEAPGRASL	9	Unmodified	_GEAPGRASL_					0	0	0		ENST00000585277.1_1_17:73467910-73481792:+|nuORF;ENST00000577380.5_1_17:73467910-73481983:+|nuORF	ENST00000585277.1_1_17:73467910-73481792:+|nuORF	ENST00000585277.1_1_17:73467910-73481792:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	429.22705078125	2	429.227417	856.44028	0.14573	6.2553E-05	-2.7552	-0.0011826	-2.6095	-0.0011201	429.2273219214749	45.009	0.70776	45.009	44.706	45.413	0					57	15	6	0	0	0	0.22035	1	3084	3084		72.879	14.097	1	1051600			13224	14025	10856	10868	14373	14373					0.0063175468651479605
GEAQQPQRAR	10	Unmodified	_GEAQQPQRAR_					0	0	0			REV__chr3:66400722-66405198|202|11.95|0.29|5.36|-|0|None,LRIG1|1	REV__chr3:66400722-66405198|202|11.95|0.29|5.36|-|0|None,LRIG1|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	569.8328247070312	2	570.79706	1139.57957	-0.44884	-0.0002562	0.37549	0.00021433	-0.073352	-4.1869E-05	570.7972591449193	93.729	0.90815	91.222	90.963	91.871	-2.5072					34	19	2	0	0	0	0.026782	1	8232	8232		30.318	0	1	171590	+		13225	16047	10857	10869	14374	14374					0.015360923038997498
GEAQRLIEIL	10	Unmodified	_GEAQRLIEIL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	OvCa9_classI_Rep2	2	571.3326416015625	2	571.332413	1140.65027	-1.5942	-0.00091083	1.4384	0.00082178	-0.15587	-8.9052E-05	571.333039561483	116.37	1.1872	116.24	115.92	117.11	-0.12869					58	23	4	0	0	0	0.40664	1	11119	11119		67.494	5.3863	1	187230			13226	3744	10858	10870	14375	14375					0.08557372568861865
GEAQRLIEIL	10	Unmodified	_GEAQRLIEIL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	571.3330688476562	2	571.332413	1140.65027	-0.80515	-0.00046001	0.77941	0.0004453	-0.025739	-1.4706E-05	571.3325786177619	117.75	1.3144	116.4	116.1	117.42	-1.3444					78	24	6	0	0	0	0.43433	1	11038	11038		63.534	4.7519	1	282390			13227	3744	10858	10870	14376	14376					0.08557372568861865
GEAQVGKTSL	10	Unmodified	_GEAQVGKTSL_					0	0	0		ENSG00000140983|ENST00000315082|RHOT2;ENST00000562708.5_1_16:718199-718465:+|nuORF;ENST00000569675.5_1_16:718199-718652:+|nuORF;ENST00000562598.5_1_16:718199-720176:+|nuORF;RHOT2|p.I155Dfs*21|2|0.6|ENSG00000140983|chr16:670479-670480|-/G|frameshift_variant;ENST00000567017.5_1_16:718199-721765:+|nuORF;ENST00000568950.5_1_16:718199-721765:+|nuORF	ENSG00000140983|ENST00000315082|RHOT2	ENSG00000140983|ENST00000315082|RHOT2	MULTI-MSMS	OvCa99_classI_Rep5	1	495.2710266113281	2	495.266739	988.518924	-0.92863	-0.00045992	0.65573	0.00032476	-0.2729	-0.00013516	495.26689959326035	50.267	0.78616	50.267	49.944	50.73	0					43	17	4	0	0	0	0.26708	1	3800	3800		84.817	17.324	1	1953900			13228	4885	10859	10871	14377	14377					0.024205622009731087
GEARVGSEL	9	Unmodified	_GEARVGSEL_					0	0	0		GTF3C1|p.H1425Rfs*3|1|0.29|ENSG00000077235|chr16:27476515-27476530|TGAAGCACCAGAAAGT/-|frameshift_variant;nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1	GTF3C1|p.H1425Rfs*3|1|0.29|ENSG00000077235|chr16:27476515-27476530|TGAAGCACCAGAAAGT/-|frameshift_variant	GTF3C1|p.H1425Rfs*3|1|0.29|ENSG00000077235|chr16:27476515-27476530|TGAAGCACCAGAAAGT/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	459.23828125	2	459.237981	916.461409	-0.78853	-0.00036212	0.62757	0.00028821	-0.16096	-7.3919E-05	459.23817942164027	49.656	0.82793	49.656	49.373	50.201	0					46	18	4	0	0	0	0.084918	1	3737	3737		101.25	10.883	1	3907200			13229	1567	10860	10872	14378	14378					-0.0001628000460414114
GEASKLQQF	9	Unmodified	_GEASKLQQF_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.26239013671875	2	504.261456	1006.50836	-0.13969	-7.0441E-05	0.04067	2.0508E-05	-0.099022	-4.9933E-05	504.26129657797924	64.715	1.2097	61.23	60.921	62.13	-3.4854					69	24	4	0	0	0	0.014622	2	4619	4619;4629		154.12	43.998	1	612050			13230	3083	10861	10873	14379;14380	14379					0.005365795465195333
GEASKLQQF	9	Unmodified	_GEASKLQQF_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	504.261456	1006.50836	-0.42766	-0.00021565	-3.211	-0.0016192	-3.6387	-0.0018348	504.2594109771388	61.271	0.55764	61.271	60.943	61.501	0	0.017448	-0.0037743	NaN	154.12	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	575420			13231	3083	10861	10873							0.005365795465195333
GEASKLQQF	9	Unmodified	_GEASKLQQF_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	504.261456	1006.50836	-1.1592	-0.00058452	1.1073	0.00055837	-0.051851	-2.6146E-05	504.2618422537507	63.985	1.2135	61.26	60.862	62.076	-2.7245	0.0062771	0.00058083	NaN	154.12	50	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134440			13232	3083	10861	10873							0.005365795465195333
GEASKLQQFL	10	Unmodified	_GEASKLQQFL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OvCa9_classI_Rep2	2	560.8035888671875	2	560.803488	1119.59242	0.67833	0.00038041	-0.75246	-0.00042198	-0.074136	-4.1576E-05	560.8030550870202	96.516	1.1328	95.558	95.281	96.414	-0.95857					70	22	5	0	0	0	0.11648	4	8718	8700;8704;8711;8718		109.44	35.479	1	519580			13233	3083	10862	10874	14381;14382;14383;14384	14384					0.03741110643431966
GEASKLQQFL	10	Unmodified	_GEASKLQQFL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OvCa9_classI_Rep3	3	560.8043823242188	2	560.803488	1119.59242	-0.88408	-0.0004958	1.0072	0.00056486	0.12315	6.9062E-05	560.8040660724555	97.43	1.312	95.671	95.362	96.674	-1.7595					63	25	4	0	0	0	0.023817	2	6462	6458;6462		143.37	29.962	1	637690			13234	3083	10862	10874	14385;14386	14386					0.03741110643431966
GEASKLQQFL	10	Unmodified	_GEASKLQQFL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.8040161132812	2	560.803488	1119.59242	1.4878	0.00083438	-1.526	-0.00085577	-0.038141	-2.139E-05	560.8026765336431	97.995	1.8412	95.616	95.317	97.158	-2.3786					78	35	5	0	0	0	0.16967	3	8711	8687;8697;8711		99.013	18.401	1	618070			13235	3083	10862	10874	14387;14388;14389	14389					0.03741110643431966
GEASKLQQFL	10	Unmodified	_GEASKLQQFL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	560.803488	1119.59242	2.6977	0.0015129	0.51413	0.00028833	3.2119	0.0018012	560.8035568466768	95.334	0.37621	95.334	95.119	95.495	0	-0.21053	0.0010686	NaN	143.37	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179170			13236	3083	10862	10874							0.03741110643431966
GEATEHLTQL	10	Unmodified	_GEATEHLTQL_					0	0	0		LAMB2|p.A1715Sfs*4|1|0.69|ENSG00000172037|chr3:49121550-49121551|-/T|frameshift_variant;ENSG00000172037|ENST00000305544|LAMB2;ENST00000469665.1_1_3:49160507-49161165:-|nuORF;ENST00000477225.1_1_3:49160862-49161360:-|nuORF	LAMB2|p.A1715Sfs*4|1|0.69|ENSG00000172037|chr3:49121550-49121551|-/T|frameshift_variant	LAMB2|p.A1715Sfs*4|1|0.69|ENSG00000172037|chr3:49121550-49121551|-/T|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	549.7757568359375	2	549.774928	1097.5353	-0.29134	-0.00016017	0.66911	0.00036786	0.37777	0.00020769	549.7751402798046	69.324	1.1915	69.324	68.939	70.13	0					60	28	4	0	0	0	0.03438	2	6582	6582;6610		134.77	36.136	1	15378000			13237	7262	10863	10875	14390;14391	14390					-0.009563566329461537
GEATRVII	8	Unmodified	_GEATRVII_					0	0	0			REV__ATP8B1|p.P610A|1|0.48|ENSG00000081923|chr18:57671572-57671572|G/C|missense_variant	REV__ATP8B1|p.P610A|1|0.48|ENSG00000081923|chr18:57671572-57671572|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	429.7560729980469	2	429.75581	857.497067	-0.065104	-2.7979E-05	0.19038	8.1818E-05	0.12528	5.3839E-05	429.75572507805686	31.13	0.63941	28.42	28.15	28.789	-2.7097					31	12	3	0	0	0	0.73938	1	924	924		31.955	0	1	162230	+		13238	15680	10864	10876	14392	14392					0.06261802243045622
GEAVGHIIL	9	Unmodified	_GEAVGHIIL_					0	0	0		tr|A0A7D6ZRS5|A0A7D6ZRS5_9CLOTBclAC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04855PE=4SV=1	tr|A0A7D6ZRS5|A0A7D6ZRS5_9CLOTBclAC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04855PE=4SV=1	tr|A0A7D6ZRS5|A0A7D6ZRS5_9CLOTBclAC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04855PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	455.259033203125	2	454.763635	907.512717	1.0927	0.00049694	-1.1397	-0.00051829	-0.046947	-2.135E-05	454.7629422123353	84.28	1.3786	81.617	81.265	82.643	-2.6629					57	28	3	0	0	0	0.027456	1	7127	7127		19.36	6.4008	1	181540			13239	35721	10865	10877	14393	14393					0.0552608876010936
GEAVGHIIL	9	Unmodified	_GEAVGHIIL_					0	0	0		tr|A0A7D6ZRS5|A0A7D6ZRS5_9CLOTBclAC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04855PE=4SV=1	tr|A0A7D6ZRS5|A0A7D6ZRS5_9CLOTBclAC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04855PE=4SV=1	tr|A0A7D6ZRS5|A0A7D6ZRS5_9CLOTBclAC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04855PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	454.763635	907.512717	-0.95871	-0.00043599	1.0839	0.00049294	0.12523	5.6949E-05	454.76383119220486	83.697	1.688	81.436	80.967	82.655	-2.261	-0.090493	0.0010821	NaN	19.36	61	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103300			13240	35721	10865	10877							0.0552608876010936
GEAVVNRVF	9	Unmodified	_GEAVVNRVF_					0	0	0		ENST00000467593.1_1_6:32823908-32826344:+|nuORF;nc|ENSG00000240065|P28065-2|PSMB9;ENSG00000240065|ENST00000374859|PSMB9	ENST00000467593.1_1_6:32823908-32826344:+|nuORF	ENST00000467593.1_1_6:32823908-32826344:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	495.7722473144531	2	495.771991	989.529429	-0.19383	-9.6094E-05	0.1143	5.6666E-05	-0.079529	-3.9428E-05	495.7719111582058	80.5	1.3791	78.177	77.827	79.206	-2.3226					67	26	4	0	0	0	0.059253	3	4425	4418;4425;4431		113.41	29.957	1	975860			13241	9335	10866	10878	14394;14395;14396	14395					0.03424589646044751
GEAVVNRVF	9	Unmodified	_GEAVVNRVF_					0	0	0		ENST00000467593.1_1_6:32823908-32826344:+|nuORF;nc|ENSG00000240065|P28065-2|PSMB9;ENSG00000240065|ENST00000374859|PSMB9	ENST00000467593.1_1_6:32823908-32826344:+|nuORF	ENST00000467593.1_1_6:32823908-32826344:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.77276611328125	2	495.771991	989.529429	-0.76827	-0.00038089	0.5571	0.0002762	-0.21117	-0.00010469	495.772156309207	81.033	1.3138	78.323	78.052	79.365	-2.7106					54	26	4	0	0	0	0.070405	2	6639	6639;6652		107.01	46.889	1	904820			13242	9335	10866	10878	14397;14398	14397					0.03424589646044751
GEAVVNRVF	9	Unmodified	_GEAVVNRVF_					0	0	0		ENST00000467593.1_1_6:32823908-32826344:+|nuORF;nc|ENSG00000240065|P28065-2|PSMB9;ENSG00000240065|ENST00000374859|PSMB9	ENST00000467593.1_1_6:32823908-32826344:+|nuORF	ENST00000467593.1_1_6:32823908-32826344:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	495.771991	989.529429	0.49715	0.00024647	-0.5163	-0.00025597	-0.019147	-9.4926E-06	495.77149549327015	80.242	1.493	78.546	77.975	79.468	-1.6951	0.19771	-0.0005626	NaN	113.41	75	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	344010			13243	9335	10866	10878							0.03424589646044751
GEDEDGGWRL	10	Unmodified	_GEDEDGGWRL_					0	0	0		nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2;GIGYF2|p.R396Hfs*77|1|0.02|ENSG00000204120|chr2:232791349-232791350|-/CATTC|frameshift_variant	nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.2786254882812	2	567.246535	1132.47852	2.3649	0.0013415	0.39854	0.00022607	2.7634	0.0015676	567.2466863399986	84.035	0.71558	84.035	83.757	84.472	0					32	16	3	0	0	0	0.026803	1	8760	8760		56.434	12.317	1	1077900			13244	8948	10867	10879	14399	14399					-0.08242404189468289
GEDEPLHAL	9	Unmodified	_GEDEPLHAL_					0	0	0		nc|ENSG00000168066|Q15637-4|SF1;nc|ENSG00000168066|Q15637-6|SF1;nc|ENSG00000168066|Q15637-7|SF1;nc|ENSG00000168066|Q15637-3|SF1;nc|ENSG00000168066|Q15637-2|SF1;ENSG00000168066|ENST00000377390|SF1;nc|ENSG00000168066|Q15637-5|SF1;SF1|p.T208I|1|0.06|ENSG00000168066|chr11:64769466-64769466|G/A|missense_variant;SF1|p.L196F|1|0.05|ENSG00000168066|chr11:64769501-64769501|C/A|missense_variant	nc|ENSG00000168066|Q15637-4|SF1	nc|ENSG00000168066|Q15637-4|SF1	MULTI-MSMS	OvCa99_classI_Rep5	1	490.7386474609375	2	490.737814	979.461075	2.4014	0.0011785	-0.91007	-0.00044661	1.4913	0.00073186	490.73735623088464	75.273	1.1102	75.273	75.005	76.115	0					68	27	5	0	0	0	0.011548	2	7498	7469;7498		163.84	57.836	1	20968000			13245	6871	10868	10880	14400;14401	14401					-0.02947699724472841
GEDEPLHAL	9	Unmodified	_GEDEPLHAL_					0	0	0		nc|ENSG00000168066|Q15637-4|SF1;nc|ENSG00000168066|Q15637-6|SF1;nc|ENSG00000168066|Q15637-7|SF1;nc|ENSG00000168066|Q15637-3|SF1;nc|ENSG00000168066|Q15637-2|SF1;ENSG00000168066|ENST00000377390|SF1;nc|ENSG00000168066|Q15637-5|SF1;SF1|p.T208I|1|0.06|ENSG00000168066|chr11:64769466-64769466|G/A|missense_variant;SF1|p.L196F|1|0.05|ENSG00000168066|chr11:64769501-64769501|C/A|missense_variant	nc|ENSG00000168066|Q15637-4|SF1	nc|ENSG00000168066|Q15637-4|SF1	MULTI-MSMS	OvCa9_classI_Rep2	2	490.7363586425781	2	490.737814	979.461075	0.29676	0.00014563	-0.57629	-0.00028281	-0.27953	-0.00013718	490.7374351358776	77.913	1.9428	76.124	75.468	77.411	-1.7894					98	37	4	0	0	0	0.018995	4	6496	6492;6496;6503;6511		148.21	79.419	1	583040			13246	6871	10868	10880	14402;14403;14404;14405	14403					-0.02947699724472841
GEDEPLHAL	9	Unmodified	_GEDEPLHAL_					0	0	0		nc|ENSG00000168066|Q15637-4|SF1;nc|ENSG00000168066|Q15637-6|SF1;nc|ENSG00000168066|Q15637-7|SF1;nc|ENSG00000168066|Q15637-3|SF1;nc|ENSG00000168066|Q15637-2|SF1;ENSG00000168066|ENST00000377390|SF1;nc|ENSG00000168066|Q15637-5|SF1;SF1|p.T208I|1|0.06|ENSG00000168066|chr11:64769466-64769466|G/A|missense_variant;SF1|p.L196F|1|0.05|ENSG00000168066|chr11:64769501-64769501|C/A|missense_variant	nc|ENSG00000168066|Q15637-4|SF1	nc|ENSG00000168066|Q15637-4|SF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.7381591796875	2	490.737814	979.461075	0.25475	0.00012502	-0.99374	-0.00048766	-0.73898	-0.00036265	490.7372844672581	78.72	1.7092	75.968	75.666	77.376	-2.7514					85	35	4	0	0	0	0.007319	4	6356	6347;6356;6369;6381		190.71	87.936	1	2396800			13247	6871	10868	10880	14406;14407;14408;14409	14407					-0.02947699724472841
GEDEPLHAL	9	Unmodified	_GEDEPLHAL_					0	0	0		nc|ENSG00000168066|Q15637-4|SF1;nc|ENSG00000168066|Q15637-6|SF1;nc|ENSG00000168066|Q15637-7|SF1;nc|ENSG00000168066|Q15637-3|SF1;nc|ENSG00000168066|Q15637-2|SF1;ENSG00000168066|ENST00000377390|SF1;nc|ENSG00000168066|Q15637-5|SF1;SF1|p.T208I|1|0.06|ENSG00000168066|chr11:64769466-64769466|G/A|missense_variant;SF1|p.L196F|1|0.05|ENSG00000168066|chr11:64769501-64769501|C/A|missense_variant	nc|ENSG00000168066|Q15637-4|SF1	nc|ENSG00000168066|Q15637-4|SF1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	490.737814	979.461075	-0.99911	-0.0004903	0.81058	0.00039778	-0.18853	-9.2517E-05	490.73823194552284	77.906	0.44699	75.553	75.353	75.8	-2.3527	0.14031	0.0014932	NaN	163.84	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18771			13248	6871	10868	10880							-0.02947699724472841
GEDGAGKTSL	10	Unmodified	_GEDGAGKTSL_					0	0	0		ENSG00000144635|ENST00000273130|DYNC1LI1;ENST00000481915.5_1_3:32574447-32611850:-|nuORF;ENST00000475193.1_1_3:32587326-32612262:-|nuORF	ENSG00000144635|ENST00000273130|DYNC1LI1	ENSG00000144635|ENST00000273130|DYNC1LI1	MULTI-MSMS	OvCa99_classI_Rep5	1	467.7276611328125	2	467.727446	933.44034	-0.45784	-0.00021414	0.52486	0.00024549	0.067023	3.1349E-05	467.7275562820554	38.092	0.58927	38.092	37.896	38.486	0					21	12	2	0	0	0	0.27679	1	2142	2142		83.647	6.3294	1	685030			13249	5166	10869	10881	14410	14410					-0.029042901041407276
GEDGSGKTTL	10	Unmodified	_GEDGSGKTTL_					0	0	0		nc|ENSG00000135720|O43237-2|DYNC1LI2;ENSG00000135720|ENST00000258198|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	nc|ENSG00000135720|O43237-2|DYNC1LI2	MULTI-MSMS	OvCa99_classI_Rep5	1	482.7325744628906	2	482.732729	963.450904	-0.2265	-0.00010934	-0.20484	-9.8884E-05	-0.43134	-0.00020822	482.7325606301315	35.776	1.0117	35.776	35.339	36.351	0					54	21	4	0	0	0	0.05764	1	1824	1824		126.24	40.883	1	2150300			13250	4406	10870	10882	14411	14411					-0.032283074497058806
GEDIMLQMDK	10	Unmodified	_GEDIMLQMDK_					0	0	0			REV__tr|A0A7D6ZHB1|A0A7D6ZHB1_9CLOTDihydropyrimidinaseOS=ClostridiumintestinaleOX=36845GN=hydAPE=3SV=1	REV__tr|A0A7D6ZHB1|A0A7D6ZHB1_9CLOTDihydropyrimidinaseOS=ClostridiumintestinaleOX=36845GN=hydAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	590.267822265625	2	590.272849	1178.53115	-7.705	-0.0045481	0.67006	0.00039552	-7.035	-0.0041526	590.2732006658329	159.89	2.9332	158.56	157.96	160.89	-1.3316					148	58	4	0	0	0	0.59317	1	13871	13871		42.864	0.52619	1	239760	+		13251	32020	10871	10883	14412	14412					-0.05097905442539741
GEDIPREML	9	Unmodified	_GEDIPREML_					0	0	0		nc|ENSG00000144711|Q6DN90-2|IQSEC1;IQSEC1|p.N846Tfs*27|1|0.43|ENSG00000144711|chr3:12909358-12909358|G/-|frameshift_variant;nc|ENSG00000144711|Q6DN90|IQSEC1;ENSG00000144711|ENST00000613206|IQSEC1	nc|ENSG00000144711|Q6DN90-2|IQSEC1	nc|ENSG00000144711|Q6DN90-2|IQSEC1	MULTI-MSMS	OvCa99_classI_Rep5	1	530.2619018554688	2	530.260599	1058.50665	2.5714	0.0013635	0.21091	0.00011184	2.7823	0.0014753	530.2605380009567	86.343	0.93999	86.343	86.073	87.013	0					54	22	4	0	0	0	0.17606	2	9120	9090;9120		80.455	10.827	1	5882300			13252	5175	10872	10884	14413;14414	14414					-0.020267975337446842
GEDKRSPQL	9	Unmodified	_GEDKRSPQL_					0	0	0		ENSG00000099219|ENST00000339450|ERMP1	ENSG00000099219|ENST00000339450|ERMP1	ENSG00000099219|ENST00000339450|ERMP1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.2696533203125	2	515.269813	1028.52507	-1.1809	-0.00060847	1.1803	0.00060816	-0.00060542	-3.1196E-07	515.2703078633535	34.327	0.61559	34.327	34.017	34.632	0					27	12	3	0	0	0	0.29519	1	1645	1645		63.534	2.5619	1	688450			13253	1961	10873	10885	14415	14415					0.011950804324669662
GEDKSSKNLL	10	Unmodified	_GEDKSSKNLL_					0	0	0		ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO	ENSG00000094975|ENST00000263688|SUCO	ENSG00000094975|ENST00000263688|SUCO	MULTI-MSMS	OvCa99_classI_Rep5	1	545.7906494140625	2	545.790578	1089.5666	-0.70801	-0.00038642	-0.43067	-0.00023506	-1.1387	-0.00062148	545.7901757431837	39.542	0.63897	39.542	39.332	39.971	0					37	14	4	0	0	0	0.20536	1	2332	2332		93.598	8.4368	1	1159600			13254	1917	10874	10886	14416	14416					0.025402164011666173
GEDKTSAQVSL	11	Unmodified	_GEDKTSAQVSL_					0	0	0		VWA5A|p.P249Sfs*2|1|0.18|ENSG00000110002|chr11:124119073-124119074|-/T|frameshift_variant;VWA5A|p.P249Hfs*11|1|0.17|ENSG00000110002|chr11:124119074-124119075|-/ATAAAAAGTGTTGGCAAGGAAAACAGAA|frameshift_variant;nc|ENSG00000110002|O00534-4|VWA5A;nc|ENSG00000110002|O00534-3|VWA5A;nc|ENSG00000110002|O00534-2|VWA5A;ENSG00000110002|ENST00000456829|VWA5A	VWA5A|p.P249Sfs*2|1|0.18|ENSG00000110002|chr11:124119073-124119074|-/T|frameshift_variant	VWA5A|p.P249Sfs*2|1|0.18|ENSG00000110002|chr11:124119073-124119074|-/T|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	567.7848510742188	2	567.785492	1133.55643	-0.6141	-0.00034867	-0.15783	-8.9615E-05	-0.77193	-0.00043829	567.7854184551862	59.488	1.4957	59.488	59.192	60.688	0					89	37	5	0	0	0	0.061973	2	5118	5118;5148		108.31	12.279	1	17184000			13255	2746	10875	10887	14417;14418	14417					-0.005003913240898328
GEDKTSAQVSL	11	Unmodified	_GEDKTSAQVSL_					0	0	0		VWA5A|p.P249Sfs*2|1|0.18|ENSG00000110002|chr11:124119073-124119074|-/T|frameshift_variant;VWA5A|p.P249Hfs*11|1|0.17|ENSG00000110002|chr11:124119074-124119075|-/ATAAAAAGTGTTGGCAAGGAAAACAGAA|frameshift_variant;nc|ENSG00000110002|O00534-4|VWA5A;nc|ENSG00000110002|O00534-3|VWA5A;nc|ENSG00000110002|O00534-2|VWA5A;ENSG00000110002|ENST00000456829|VWA5A	VWA5A|p.P249Sfs*2|1|0.18|ENSG00000110002|chr11:124119073-124119074|-/T|frameshift_variant	VWA5A|p.P249Sfs*2|1|0.18|ENSG00000110002|chr11:124119073-124119074|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.7864379882812	2	567.785492	1133.55643	0.20037	0.00011377	-0.6456	-0.00036656	-0.44523	-0.00025279	567.7850094322048	63.463	1.3538	59.988	59.723	61.077	-3.475					58	27	3	0	0	0	0.00613	4	4466	4455;4466;4479;4493		164.66	35.242	1	1168400			13256	2746	10875	10887	14419;14420;14421;14422	14420					-0.005003913240898328
GEDKTSAQVSL	11	Unmodified	_GEDKTSAQVSL_					0	0	0		VWA5A|p.P249Sfs*2|1|0.18|ENSG00000110002|chr11:124119073-124119074|-/T|frameshift_variant;VWA5A|p.P249Hfs*11|1|0.17|ENSG00000110002|chr11:124119074-124119075|-/ATAAAAAGTGTTGGCAAGGAAAACAGAA|frameshift_variant;nc|ENSG00000110002|O00534-4|VWA5A;nc|ENSG00000110002|O00534-3|VWA5A;nc|ENSG00000110002|O00534-2|VWA5A;ENSG00000110002|ENST00000456829|VWA5A	VWA5A|p.P249Sfs*2|1|0.18|ENSG00000110002|chr11:124119073-124119074|-/T|frameshift_variant	VWA5A|p.P249Sfs*2|1|0.18|ENSG00000110002|chr11:124119073-124119074|-/T|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	567.785492	1133.55643	-2.1793	-0.0012374	2.17	0.0012321	-0.0092879	-5.2735E-06	567.7865094508222	62.931	1.207	60.187	59.795	61.002	-2.7444	0.099486	0.0012646	NaN	164.66	45	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194340			13257	2746	10875	10887							-0.005003913240898328
GEDLEKVTL	9	Unmodified	_GEDLEKVTL_					0	0	0		ENST00000470876.1_1_5:133900168-133909634:+|nuORF;nc|ENSG00000043143|Q9NQC1-3|JADE2;nc|ENSG00000043143|Q9NQC1-2|JADE2;nc|ENSG00000043143|Q9NQC1|JADE2;ENSG00000043143|ENST00000681547|JADE2	ENST00000470876.1_1_5:133900168-133909634:+|nuORF	ENST00000470876.1_1_5:133900168-133909634:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	502.26983642578125	2	502.268947	1002.52334	2.14	0.0010748	0.54335	0.00027291	2.6833	0.0013477	502.2689914287443	84.035	0.83253	84.035	83.757	84.589	0					39	19	3	0	0	0	0.014622	1	8752	8752		154.12	31.942	1	6126400			13258	12370	10876	10888	14423	14423					0.02218026623870628
GEDLEKVTL	9	Unmodified	_GEDLEKVTL_					0	0	0		ENST00000470876.1_1_5:133900168-133909634:+|nuORF;nc|ENSG00000043143|Q9NQC1-3|JADE2;nc|ENSG00000043143|Q9NQC1-2|JADE2;nc|ENSG00000043143|Q9NQC1|JADE2;ENSG00000043143|ENST00000681547|JADE2	ENST00000470876.1_1_5:133900168-133909634:+|nuORF	ENST00000470876.1_1_5:133900168-133909634:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	502.268947	1002.52334	-1.9121	-0.00096037	0.93421	0.00046922	-0.97785	-0.00049115	502.2694357819809	85.662	0.98837	84.171	83.604	84.592	-1.4906	0.16816	0.00059782	NaN	154.12	35	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26553			13259	12370	10876	10888							0.02218026623870628
GEDLEKVTL	9	Unmodified	_GEDLEKVTL_					0	0	0		ENST00000470876.1_1_5:133900168-133909634:+|nuORF;nc|ENSG00000043143|Q9NQC1-3|JADE2;nc|ENSG00000043143|Q9NQC1-2|JADE2;nc|ENSG00000043143|Q9NQC1|JADE2;ENSG00000043143|ENST00000681547|JADE2	ENST00000470876.1_1_5:133900168-133909634:+|nuORF	ENST00000470876.1_1_5:133900168-133909634:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	502.268947	1002.52334	-1.4705	-0.00073858	-1.2779	-0.00064185	-2.7484	-0.0013804	502.2694068940078	86.074	0.95116	83.853	83.486	84.437	-2.2204	-0.14973	-0.0016243	NaN	154.12	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96889			13260	12370	10876	10888							0.02218026623870628
GEDLEKVTL	9	Unmodified	_GEDLEKVTL_					0	0	0		ENST00000470876.1_1_5:133900168-133909634:+|nuORF;nc|ENSG00000043143|Q9NQC1-3|JADE2;nc|ENSG00000043143|Q9NQC1-2|JADE2;nc|ENSG00000043143|Q9NQC1|JADE2;ENSG00000043143|ENST00000681547|JADE2	ENST00000470876.1_1_5:133900168-133909634:+|nuORF	ENST00000470876.1_1_5:133900168-133909634:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	502.268947	1002.52334	0.49546	0.00024885	-2.3687	-0.0011897	-1.8732	-0.00094085	502.2678880502889	86.58	0.78669	83.953	83.762	84.549	-2.6269	-0.050216	-0.00272	NaN	154.12	29	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58342			13261	12370	10876	10888							0.02218026623870628
GEDLTKNHDEL	11	Unmodified	_GEDLTKNHDEL_					0	0	0		ENSG00000049449|ENST00000054950|RCN1;nc|ENSG00000049449|Q15293-2|RCN1	ENSG00000049449|ENST00000054950|RCN1	ENSG00000049449|ENST00000054950|RCN1	MULTI-MSMS	OvCa99_classI_Rep5	1	635.8014526367188	2	635.799131	1269.58371	0.055617	3.5361E-05	-0.2485	-0.000158	-0.19289	-0.00012264	635.7988495177968	51.521	0.62159	51.521	51.291	51.912	0					40	14	4	0	0	0	0.18124	1	3973	3973		65.157	30.005	1	2487100			13262	1169	10877	10889	14424	14424					-0.04029907783683484
GEDLTKNHDEL	11	Unmodified	_GEDLTKNHDEL_					0	0	0		ENSG00000049449|ENST00000054950|RCN1;nc|ENSG00000049449|Q15293-2|RCN1	ENSG00000049449|ENST00000054950|RCN1	ENSG00000049449|ENST00000054950|RCN1	MULTI-MSMS	OvCa99_classI_Rep5	1	424.2030334472656	3	424.201846	1269.58371	-0.02329	-9.8797E-06	-0.40389	-0.00017133	-0.42718	-0.00018121	424.20158921413065	51.502	0.57986	51.502	51.332	51.912	0					41	13	5	0	0	0	0.21819	1	3978	3978		77.533	26.341	1	2015500			13263	1169	10877	10889	14425	14425					-0.04029907783683484
GEDLTKNHDEL	11	Unmodified	_GEDLTKNHDEL_					0	0	0		ENSG00000049449|ENST00000054950|RCN1;nc|ENSG00000049449|Q15293-2|RCN1	ENSG00000049449|ENST00000054950|RCN1	ENSG00000049449|ENST00000054950|RCN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	635.8008422851562	2	635.799131	1269.58371	-0.36497	-0.00023205	0.39148	0.0002489	0.026515	1.6859E-05	635.7992850580046	55.733	1.3664	52.438	52.16	53.527	-3.2944					76	26	4	0	0	0	0.25724	1	3532	3532		63.426	0	1	592900			13264	1169	10877	10889	14426	14426					-0.04029907783683484
GEDLTKNHDEL	11	Unmodified	_GEDLTKNHDEL_					0	0	0		ENSG00000049449|ENST00000054950|RCN1;nc|ENSG00000049449|Q15293-2|RCN1	ENSG00000049449|ENST00000054950|RCN1	ENSG00000049449|ENST00000054950|RCN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	424.2028503417969	3	424.201846	1269.58371	-0.60516	-0.00025671	0.56158	0.00023822	-0.043585	-1.8489E-05	424.20206132634894	55.733	1.2646	52.438	52.16	53.425	-3.2944					58	24	3	0	0	0	0.25759	1	3533	3533		72.243	28.592	1	592960			13265	1169	10877	10889	14427	14427					-0.04029907783683484
GEDLTKNHDEL	11	Unmodified	_GEDLTKNHDEL_					0	0	0		ENSG00000049449|ENST00000054950|RCN1;nc|ENSG00000049449|Q15293-2|RCN1	ENSG00000049449|ENST00000054950|RCN1	ENSG00000049449|ENST00000054950|RCN1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	424.201846	1269.58371	-0.97811	-0.00041492	1.2578	0.00053356	0.27968	0.00011864	424.20235033598163	55.382	0.89301	52.568	52.322	53.215	-2.8139	0.064928	0.00023351	NaN	72.243	44	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118410			13266	1169	10877	10889							-0.04029907783683484
GEDLTRHHDEL	11	Unmodified	_GEDLTRHHDEL_					0	0	0		ENSG00000142552|ENST00000270645|RCN3	ENSG00000142552|ENST00000270645|RCN3	ENSG00000142552|ENST00000270645|RCN3	MULTI-MSMS	OvCa99_classI_Rep5	1	441.209228515625	3	441.209224	1320.60584	-0.15125	-6.6732E-05	-0.021479	-9.4766E-06	-0.17273	-7.6209E-05	441.2091949386615	43.8	0.91206	43.8	43.393	44.305	0					60	20	5	0	0	0	0.1228	2	2909	2909;2932		92.239	30.474	1	4390100			13267	4979	10878	10890	14428;14429	14428					-0.04163683315277922
GEDMASTAPL	10	Unmodified	_GEDMASTAPL_					0	0	0			REV__ARHGEF17|p.Y1216Sfs*5|1|0.09|ENSG00000110237|chr11:73355937-73355937|A/-|frameshift_variant	REV__ARHGEF17|p.Y1216Sfs*5|1|0.09|ENSG00000110237|chr11:73355937-73355937|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	496.2479553222656	2	496.223682	990.432811	-0.27281	-0.00013538	3.6996	0.0018358	3.4268	0.0017004	496.2257496591659	69.398	0.28345	69.398	69.268	69.552	0					11	6	2	0	0	0	0.37918	1	6586	6586		71.296	1.6681	1	310230	+		13268	15654	10879	10891	14430	14430					-0.06278765696072242
GEDNGQRGYLL	11	Unmodified	_GEDNGQRGYLL_					0	0	0		ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	ENSG00000018510|ENST00000264167|AGPS	MULTI-MSMS	OvCa99_classI_Rep5	1	611.2984619140625	2	611.296559	1220.57856	1.1365	0.00069471	-0.13463	-8.2301E-05	1.0018	0.00061241	611.2964101920868	74.568	0.76268	74.568	74.324	75.087	0					45	18	4	0	0	0	0.15616	1	7375	7375		85.862	14.566	1	3099100			13269	1013	10880	10892	14431	14431					-0.022901668556642107
GEDQTQDTEL	10	Unmodified	_GEDQTQDTEL_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000383620.4_1_6:29857122-29858256:+|nuORF;ENST00000470363.5_1_6:31237527-31238194:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	ENSG00000234745|ENST00000412585|HLA-B;nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000206503|ENST00000376809|HLA-A	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa99_classI_Rep5	1	568.2421264648438	2	568.241115	1134.46768	0.065552	3.7249E-05	-0.72913	-0.00041432	-0.66358	-0.00037707	568.24071966934	60.963	1.6926	60.963	60.602	62.294	0					105	39	5	0	0	0	2.0348E-09	3	5344	5324;5344;5374		237.92	91.139	1	37958000			13270	9301;9098;8996	10881	10893	14432;14433;14434	14433					-0.09417851354419327
GEDQTQDTEL	10	Unmodified	_GEDQTQDTEL_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000383620.4_1_6:29857122-29858256:+|nuORF;ENST00000470363.5_1_6:31237527-31238194:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	ENSG00000234745|ENST00000412585|HLA-B;nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000206503|ENST00000376809|HLA-A	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep4_	4	568.2428588867188	2	568.241115	1134.46768	0.71782	0.00040789	-0.9136	-0.00051914	-0.19578	-0.00011125	568.2405306593375	64.772	1.2584	61.287	61.018	62.276	-3.4854					63	25	4	0	0	0	0.1266	1	4631	4631		106.88	45.189	1	364250			13271	9301;9098;8996	10881	10893	14435	14435					-0.09417851354419327
GEDRSPPTAL	10	Unmodified	_GEDRSPPTAL_					0	0	0		ENSG00000079277|ENST00000371945|MKNK1;nc|ENSG00000079277|Q9BUB5-2|MKNK1;nc|ENSG00000079277|Q9BUB5|MKNK1	ENSG00000079277|ENST00000371945|MKNK1	ENSG00000079277|ENST00000371945|MKNK1	MULTI-MSMS	OvCa99_classI_Rep5	1	521.7628784179688	2	521.76182	1041.50909	-0.29379	-0.00015329	-0.21579	-0.00011259	-0.50958	-0.00026588	521.7616817442835	57.629	1.016	57.629	57.264	58.28	0					63	23	4	0	0	0	0.18515	1	4859	4859		96.665	22.41	1	7264300			13272	1610	10882	10894	14436	14436					-0.010006258044313654
GEDRSPPTAL	10	Unmodified	_GEDRSPPTAL_					0	0	0		ENSG00000079277|ENST00000371945|MKNK1;nc|ENSG00000079277|Q9BUB5-2|MKNK1;nc|ENSG00000079277|Q9BUB5|MKNK1	ENSG00000079277|ENST00000371945|MKNK1	ENSG00000079277|ENST00000371945|MKNK1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.76182	1041.50909	-0.62913	-0.00032826	0.019258	1.0048E-05	-0.60987	-0.00031821	521.7617299612131	60.74	1.2648	57.969	57.553	58.818	-2.7702	0.16375	0.0003646	NaN	96.665	54	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186680			13273	1610	10882	10894							-0.010006258044313654
GEDSAVLMERL	11	Unmodified	_GEDSAVLMERL_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF;ENST00000566519.1_1_16:28738032-28738629:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	OvCa99_classI_Rep5	1	610.30419921875	2	610.302995	1218.59144	3.6493	0.0022272	-1.6815	-0.0010262	1.9678	0.001201	610.3018390998741	97.526	0.47189	97.526	97.267	97.738	0					24	10	3	0	0	0	0.13636	1	10711	10711		99.788	1.2059	1	1202700			13274	8130	10883	10895	14437	14437					-0.009114717877992007
GEDSDYSPP	9	Unmodified	_GEDSDYSPP_					0	0	0			REV__ENST00000412374.2_1_5:28927195-28927363:+|nuORF	REV__ENST00000412374.2_1_5:28927195-28927363:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.68768310546875	2	483.687987	965.361421	0.12923	6.2508E-05	4.4	0.0021282	4.5292	0.0021907	483.6898283706917	112.43	0.50368	110.92	110.79	111.29	-1.5111					16	9	2	0	0	0	0.027462	1	10402	10402		23.042	3.6825	1	23525	+		13275	18269	10884	10896	14438	14438					-0.12264562129087153
GEDSDYSPP	9	Unmodified	_GEDSDYSPP_					0	0	0			REV__ENST00000412374.2_1_5:28927195-28927363:+|nuORF	REV__ENST00000412374.2_1_5:28927195-28927363:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	483.687987	965.361421	1.6185	0.00078287	3.3491	0.0016199	4.9677	0.0024028	483.6891795942696	112.08	0.59146	110.98	110.7	111.29	-1.1038	0.029467	-0.000482	NaN	23.042	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11499	+		13276	18269	10884	10896							-0.12264562129087153
GEDSLKKMQL	10	Unmodified	_GEDSLKKMQL_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MSMS	OvCa99_classI_Rep5	1	574.8040771484375	2	574.802631	1147.59071	-1.015	-0.00058344	0.67017	0.00038521	-0.34486	-0.00019823	574.802986651976	63.834	1.2748	63.834	63.1	64.375	0					58	31	3	0	0	0	0.048965	2	5760	5760;5778		129.42	36.278	1	6551200			13277	2909	10885	10897	14439;14440	14439					0.022817335631543756
GEDSLKKMQL	10	Unmodified	_GEDSLKKMQL_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MATCH	OvCa9_classI_Rep2	2		2	574.802631	1147.59071	-0.089481	-5.1434E-05	-2.408	-0.0013841	-2.4975	-0.0014356	575.3043071048676	66.197	0.89351	63.501	63.121	64.014	-2.6958	-0.16655	-0.003389	NaN	129.42	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11293			13278	2909	10885	10897							0.022817335631543756
GEDTGRVHL	9	Unmodified	_GEDTGRVHL_					0	0	0		ENSG00000109686|ENST00000604030|SH3D19;nc|ENSG00000109686|Q5HYK7-3|SH3D19;nc|ENSG00000109686|Q5HYK7-2|SH3D19;nc|ENSG00000109686|Q5HYK7|SH3D19;LRBA-SH3D19|2|fusion;ENST00000478503.6_1_4:152043245-152086876:-|nuORF;LRBA-SH3D19|3|fusion;nc|ENSG00000109686|Q5HYK7-5|SH3D19;nc|ENSG00000109686|Q5HYK7-4|SH3D19;SH3D19|p.S724R|1|0.38|ENSG00000109686|chr4:151127704-151127704|T/G|missense_variant	ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	MULTI-MSMS	OvCa99_classI_Rep5	1	492.248779296875	2	492.24888	982.483208	-0.3273	-0.00016111	-0.46913	-0.00023093	-0.79643	-0.00039204	492.24862991124843	44.863	1.5386	44.863	44.44	45.979	0					70	34	5	0	0	0	0.2077	2	3053	3053;3076		75.043	16.261	1	10939000			13279	2727	10886	10898	14441;14442	14441					-0.008734752560371817
GEDTHTVSL	9	Unmodified	_GEDTHTVSL_					0	0	0		ENSG00000143341|ENST00000271588|HMCN1;nc|ENSG00000143341|Q96RW7-2|HMCN1	ENSG00000143341|ENST00000271588|HMCN1	ENSG00000143341|ENST00000271588|HMCN1	MULTI-MSMS	OvCa99_classI_Rep5	1	479.7285461425781	2	479.727446	957.44034	0.060597	2.907E-05	0.11916	5.7163E-05	0.17976	8.6233E-05	479.72738667670774	58.468	0.57524	58.468	58.237	58.812	0					33	13	4	0	0	0	0.29717	1	4980	4980		63.306	13.282	1	1258000			13280	5038	10887	10899	14443	14443					-0.04008290104138723
GEDTPVTKL	9	Unmodified	_GEDTPVTKL_					0	0	0		ENST00000532696.1_1_11:9225120-9228222:-|nuORF;DENND5A|p.L368Wfs*62|1|0.17|ENSG00000184014|chr11:9193511-9193529|GCTTTGACCGGTCATCCAG/-|frameshift_variant;nc|ENSG00000184014|Q6IQ26-2|DENND5A;ENSG00000184014|ENST00000328194|DENND5A	ENST00000532696.1_1_11:9225120-9228222:-|nuORF	ENST00000532696.1_1_11:9225120-9228222:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	480.257568359375	2	480.25584	958.497126	0.2391	0.00011483	-0.14336	-6.8851E-05	0.095742	4.5981E-05	480.255735399981	62.782	0.67835	62.782	62.541	63.219	0					43	16	4	0	0	0	0.075543	1	5610	5610		104.06	29.802	1	3985500			13281	730	10888	10900	14444	14444					0.01621757452392103
GEEDKKLI	8	Unmodified	_GEEDKKLI_					0	0	0		tr|A0A7D6ZQH2|A0A7D6ZQH2_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00345PE=3SV=1	tr|A0A7D6ZQH2|A0A7D6ZQH2_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00345PE=3SV=1	tr|A0A7D6ZQH2|A0A7D6ZQH2_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00345PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.25823974609375	2	466.258382	930.502212	-0.42416	-0.00019777	1.486	0.00069288	1.0619	0.00049511	466.25887348086826	63.463	0.76793	59.988	59.625	60.393	-3.475					34	15	3	0	0	0	0.57734	1	4462	4462		68.787	2.3575	1	167900			13282	35701	10889	10901	14445	14445					0.03418061315016985
GEEEFAGAKL	10	Unmodified	_GEEEFAGAKL_					0	0	0		nc|ENSG00000158941|Q8N163-2|CCAR2;ENSG00000158941|ENST00000308511|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	MULTI-MSMS	OvCa99_classI_Rep5	1	525.760009765625	2	525.758746	1049.50294	1.8429	0.00096891	0.12388	6.5129E-05	1.9667	0.001034	525.7584580771969	76.824	0.86102	76.824	76.6	77.461	0					48	20	4	0	0	0	0.12738	1	7717	7717		106.68	16.082	1	4618800			13283	5980	10890	10902	14446	14446					-0.01983144035943951
GEEEFAGAKL	10	Unmodified	_GEEEFAGAKL_					0	0	0		nc|ENSG00000158941|Q8N163-2|CCAR2;ENSG00000158941|ENST00000308511|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	525.758746	1049.50294	-0.98226	-0.00051643	1.0554	0.00055489	0.073145	3.8456E-05	525.7591468034738	79.637	0.47584	76.885	76.703	77.179	-2.7514	0.030546	0.00078168	NaN	106.68	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26035			13284	5980	10890	10902							-0.01983144035943951
GEEEGDVDNL	10	Unmodified	_GEEEGDVDNL_					0	0	0			REV__ENST00000496105.1_1_3:113169108-113212968:-|nuORF	REV__ENST00000496105.1_1_3:113169108-113212968:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.7214965820312	2	538.722558	1075.43056	-2.1387	-0.0011522	0.67973	0.00036619	-1.459	-0.00078597	538.7227765525084	118.87	1.1966	117.53	117.26	118.46	-1.3444					52	22	4	0	0	0	0.6104	1	11153	11153		40.778	2.9666	1	100940	+		13285	20859	10891	10903	14447	14447					-0.10413522900171301
GEEGDLKTSL	10	Unmodified	_GEEGDLKTSL_					0	0	0		KDM4A|p.S510Ifs*2|1|0.07|ENSG00000066135|chr1:43671668-43671669|-/A|frameshift_variant;KDM4A|p.S510Qfs*4|1|0.07|ENSG00000066135|chr1:43671665-43671666|-/AGCCAGG|frameshift_variant;KDM4A|p.S510Hfs*85|1|0.05|ENSG00000066135|chr1:43671666-43671667|-/CCCATTCCCCGCCCATGTTC|frameshift_variant;KDM4A|p.R605Pfs*13|1|0.12|ENSG00000066135|chr1:43683757-43683758|-/C|frameshift_variant;ENSG00000066135|ENST00000372396|KDM4A;PCCB-KDM4A|1|fusion;PCCB-KDM4A|2|fusion	KDM4A|p.S510Ifs*2|1|0.07|ENSG00000066135|chr1:43671668-43671669|-/A|frameshift_variant	KDM4A|p.S510Ifs*2|1|0.07|ENSG00000066135|chr1:43671668-43671669|-/A|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	524.7628173828125	2	524.761486	1047.50842	-0.81822	-0.00042937	0.64934	0.00034075	-0.16888	-8.8621E-05	524.7618034329981	66.393	1.3945	66.393	65.904	67.298	0					72	34	4	0	0	0	9.1053E-06	1	6154	6154		186.41	56.989	1	16791000			13286	1345	10892	10904	14448	14448					-0.013434652441219441
GEEGDLKTSL	10	Unmodified	_GEEGDLKTSL_					0	0	0		KDM4A|p.S510Ifs*2|1|0.07|ENSG00000066135|chr1:43671668-43671669|-/A|frameshift_variant;KDM4A|p.S510Qfs*4|1|0.07|ENSG00000066135|chr1:43671665-43671666|-/AGCCAGG|frameshift_variant;KDM4A|p.S510Hfs*85|1|0.05|ENSG00000066135|chr1:43671666-43671667|-/CCCATTCCCCGCCCATGTTC|frameshift_variant;KDM4A|p.R605Pfs*13|1|0.12|ENSG00000066135|chr1:43683757-43683758|-/C|frameshift_variant;ENSG00000066135|ENST00000372396|KDM4A;PCCB-KDM4A|1|fusion;PCCB-KDM4A|2|fusion	KDM4A|p.S510Ifs*2|1|0.07|ENSG00000066135|chr1:43671668-43671669|-/A|frameshift_variant	KDM4A|p.S510Ifs*2|1|0.07|ENSG00000066135|chr1:43671668-43671669|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.7626953125	2	524.761486	1047.50842	-1.2843	-0.00067395	2.0033	0.0010513	0.71902	0.00037731	524.7625503128007	69.872	1.6065	66.391	65.762	67.369	-3.4812					78	32	4	0	0	0	0.095035	2	5249	5249;5260		114.86	37.541	1	1066400			13287	1345	10892	10904	14449;14450	14449					-0.013434652441219441
GEEGDLKTSL	10	Unmodified	_GEEGDLKTSL_					0	0	0		KDM4A|p.S510Ifs*2|1|0.07|ENSG00000066135|chr1:43671668-43671669|-/A|frameshift_variant;KDM4A|p.S510Qfs*4|1|0.07|ENSG00000066135|chr1:43671665-43671666|-/AGCCAGG|frameshift_variant;KDM4A|p.S510Hfs*85|1|0.05|ENSG00000066135|chr1:43671666-43671667|-/CCCATTCCCCGCCCATGTTC|frameshift_variant;KDM4A|p.R605Pfs*13|1|0.12|ENSG00000066135|chr1:43683757-43683758|-/C|frameshift_variant;ENSG00000066135|ENST00000372396|KDM4A;PCCB-KDM4A|1|fusion;PCCB-KDM4A|2|fusion	KDM4A|p.S510Ifs*2|1|0.07|ENSG00000066135|chr1:43671668-43671669|-/A|frameshift_variant	KDM4A|p.S510Ifs*2|1|0.07|ENSG00000066135|chr1:43671668-43671669|-/A|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	524.761486	1047.50842	-0.59523	-0.00031236	1.5809	0.00082958	0.98564	0.00051722	524.7624647681355	69.111	0.79938	66.49	66.217	67.016	-2.6203	0.065463	0.00078408	NaN	186.41	39	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207950			13288	1345	10892	10904							-0.013434652441219441
GEEGYGRSL	9	Unmodified	_GEEGYGRSL_					0	0	0		ENSG00000089053|ENST00000261819|ANAPC5;nc|ENSG00000089053|Q9UJX4-2|ANAPC5;ENST00000534976.5_1_12:121766230-121783868:-|nuORF;ENST00000541652.5_1_12:121773337-121785669:-|nuORF;ENST00000535472.5_1_12:121764442-121775147:-|nuORF;ENST00000545218.5_1_12:121756099-121775126:-|nuORF;nc|ENSG00000089053|Q9UJX4-3|ANAPC5	ENSG00000089053|ENST00000261819|ANAPC5	ENSG00000089053|ENST00000261819|ANAPC5	MULTI-MSMS	OvCa99_classI_Rep5	1	484.2288513183594	2	484.227613	966.440674	-0.45704	-0.00022131	0.4266	0.00020657	-0.030447	-1.4743E-05	484.2276952348333	50.792	0.61141	50.792	50.509	51.12	0					32	13	4	0	0	0	0.20111	1	3881	3881		76.17	19.449	1	1322700			13289	1806	10893	10905	14451	14451					-0.0438887038426401
GEEHPTESL	9	Unmodified	_GEEHPTESL_					0	0	0		ENST00000466618.1_1_2:242002912-242027813:+|nuORF;nc|ENSG00000162804|Q8TER0-3|SNED1;nc|ENSG00000162804|Q8TER0-4|SNED1;ENSG00000162804|ENST00000310397|SNED1;nc|ENSG00000162804|Q8TER0-5|SNED1	ENST00000466618.1_1_2:242002912-242027813:+|nuORF	ENST00000466618.1_1_2:242002912-242027813:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	499.72503662109375	2	499.724904	997.435254	-0.20654	-0.00010321	-0.28886	-0.00014435	-0.4954	-0.00024756	499.72475995472433	47.099	0.69895	47.099	46.852	47.551	0					50	15	5	0	0	0	0.031958	1	3359	3359		133.81	43.036	1	5110900			13290	6237	10894	10906	14452	14452					-0.06356593966756918
GEEINKNAL	9	Unmodified	_GEEINKNAL_					0	0	0		tr|A0A7D6W1E8|A0A7D6W1E8_9CLOTPhosphomannomutase/phosphoglucomutaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02450PE=3SV=1;tr|A0A7D6ZHZ0|A0A7D6ZHZ0_9CLOTPhosphomannomutase/phosphoglucomutaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01665PE=3SV=1	tr|A0A7D6W1E8|A0A7D6W1E8_9CLOTPhosphomannomutase/phosphoglucomutaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02450PE=3SV=1	tr|A0A7D6W1E8|A0A7D6W1E8_9CLOTPhosphomannomutase/phosphoglucomutaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02450PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	494.75970458984375	2	494.258914	986.503274	-0.72896	-0.0003603	-1.3453	-0.0006649	-2.0742	-0.0010252	494.25905494402974	67.964	0.87412	67.964	67.566	68.44	0					78	21	6	0	0	0	0.16562	1	6383	6383		82.241	7.1972	1	22186000			13291	35408	10895	10907	14453	14453					0.009482756839133799
GEEKEAATL	9	Unmodified	_GEEKEAATL_					0	0	0		ENST00000482651.5_1_1:156713243-156717241:-|nuORF;ENST00000465180.5_1_1:156713243-156725382:-|nuORF;nc|ENSG00000143321|P51858-2|HDGF;ENSG00000143321|ENST00000357325|HDGF;nc|ENSG00000143321|P51858-3|HDGF;ENST00000477306.1_1_1:156713442-156714029:-|nuORF	ENST00000482651.5_1_1:156713243-156717241:-|nuORF	ENST00000482651.5_1_1:156713243-156717241:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	474.23834228515625	2	474.237647	946.460741	-0.47074	-0.00022324	0.22507	0.00010674	-0.24567	-0.00011651	474.23773163367855	43.371	0.98021	43.371	43.1	44.08	0					72	22	5	0	0	0	0.0086488	1	2855	2855		176.09	50.273	1	6401000			13292	5034	10896	10908	14454	14454					-0.014631194443268214
GEEKHPPAL	9	Unmodified	_GEEKHPPAL_					0	0	0		CIC|p.K921Rfs*3|1|0.16|ENSG00000079432|chr19:42291620-42291620|A/-|frameshift_variant;CIC|p.V1007Afs*28|1|0.32|ENSG00000079432|chr19:42292310-42292322|GTGCAGTCAGCGG/-|frameshift_variant;ENSG00000079432|ENST00000681038|CIC	CIC|p.K921Rfs*3|1|0.16|ENSG00000079432|chr19:42291620-42291620|A/-|frameshift_variant	CIC|p.K921Rfs*3|1|0.16|ENSG00000079432|chr19:42291620-42291620|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	489.25616455078125	2	489.256174	976.497795	-0.57743	-0.00028251	0.44716	0.00021877	-0.13028	-6.374E-05	489.25624979725217	38.853	1.0258	38.853	38.394	39.42	0					50	22	4	0	0	0	0.19716	1	2245	2245		76.847	13.54	1	646800			13293	580	10897	10909	14455	14455					0.00860596892096055
GEEKLIASV	9	Unmodified	_GEEKLIASV_					0	0	0		ENST00000430138.6_1_9:133569178-133570981:+|nuORF;ENST00000491115.6_1_9:133569178-133574746:+|nuORF;ENST00000463488.1_1_9:133569202-133574940:+|nuORF;nc|ENSG00000130713|Q13868-3|EXOSC2;nc|ENSG00000130713|Q13868-2|EXOSC2;ENSG00000130713|ENST00000372358|EXOSC2	ENST00000430138.6_1_9:133569178-133570981:+|nuORF	ENST00000430138.6_1_9:133569178-133570981:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.2679138183594	2	473.266207	944.517862	0.3521	0.00016664	-0.89076	-0.00042157	-0.53865	-0.00025493	473.2657238801001	79.441	1.004	76.69	76.322	77.326	-2.7514					57	20	4	0	0	0	0.1243	1	6435	6435		90.601	15.558	1	495860			13294	4003	10898	10910	14456	14456					0.04338347832049294
GEELEALKTEL	11	Unmodified	_GEELEALKTEL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.A1773Sfs*19|1|0.04|ENSG00000100345|chr22:36285287-36285288|-/T|frameshift_variant;CHD2-MYH9|1|fusion;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133392|P35749-4|MYH11	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OvCa99_classI_Rep5	1	616.326171875	2	616.32445	1230.63435	1.2717	0.00078377	0.83135	0.00051238	2.103	0.0012961	616.324818068593	101.32	0.84518	101.32	101.02	101.87	0					33	19	2	0	0	0	0.012808	1	11264	11264		159.34	41.525	1	3125400			13295	2050;4218	10899	10911	14457	14457					0.028256215412966412
GEELLHSVL	9	Unmodified	_GEELLHSVL_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	MULTI-MSMS	OvCa99_classI_Rep5	1	498.7731628417969	2	498.771657	995.528761	2.1636	0.0010792	-0.26729	-0.00013331	1.8963	0.00094584	498.7714199759317	99.672	0.70101	99.672	99.405	100.11	0					36	16	3	0	0	0	0.079296	2	11009	11009;11040		102.77	16.48	1	5069300			13296	4566	10900	10912	14458;14459	14458					0.030817502063428037
GEELLHSVL	9	Unmodified	_GEELLHSVL_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.77178955078125	2	498.771657	995.528761	-1.3269	-0.00066183	0.89654	0.00044717	-0.43038	-0.00021466	498.7719641059991	101.05	2.5226	100.29	99.973	102.5	-0.764					108	50	5	0	0	0	0.062324	4	9271	9252;9257;9264;9271		111.65	28.361	1	420260			13297	4566	10900	10912	14460;14461;14462;14463	14463					0.030817502063428037
GEELLHSVL	9	Unmodified	_GEELLHSVL_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.7718811035156	2	498.771657	995.528761	-1.0108	-0.00050416	0.80574	0.00040188	-0.20507	-0.00010228	498.77192102196915	101.77	2.0944	100.24	99.951	102.05	-1.5211					106	39	5	0	0	0	0.047062	3	6971	6971;6978;6985		120.62	32.172	1	528200			13298	4566	10900	10912	14464;14465;14466	14464					0.030817502063428037
GEELLHSVL	9	Unmodified	_GEELLHSVL_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.77191162109375	2	498.771657	995.528761	-0.32325	-0.00016123	-0.019047	-9.5001E-06	-0.3423	-0.00017073	498.77153705006515	102.43	2.0963	100.23	99.937	102.03	-2.1994					94	39	4	0	0	0	0.055688	2	9226	9216;9226		115.46	44.081	1	503840			13299	4566	10900	10912	14467;14468	14468					0.030817502063428037
GEELVVQKKI	10	Unmodified	_GEELVVQKKI_					0	0	0			REV__nc|ENSG00000135218|P16671-2|CD36	REV__nc|ENSG00000135218|P16671-2|CD36	MULTI-MSMS	OvCa9_classI_Rep2	2	571.8456420898438	2	571.842613	1141.67067	-1.5713	-0.00089851	4.451	0.0025452	2.8797	0.0016467	571.8449641069082	121.28	1.187	121.08	120.75	121.94	-0.19718					49	23	3	0	0	0	0.50999	1	11719	11719		52.937	1.744	1	91385	+		13300	19265	10901	10913	14469	14469					0.10550543228669085
GEENGAHTI	9	Unmodified	_GEENGAHTI_					0	0	0		TBL1XR1|p.T203*|1|0.49|ENSG00000177565|chr3:177050075-177050093|CTGTGTAGAGCCACTGGTG/-|frameshift_variant;ENSG00000177565|ENST00000457928|TBL1XR1	TBL1XR1|p.T203*|1|0.49|ENSG00000177565|chr3:177050075-177050093|CTGTGTAGAGCCACTGGTG/-|frameshift_variant	TBL1XR1|p.T203*|1|0.49|ENSG00000177565|chr3:177050075-177050093|CTGTGTAGAGCCACTGGTG/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	464.2117614746094	2	464.211963	926.409374	-0.66583	-0.00030909	0.62119	0.00028837	-0.044639	-2.0722E-05	464.2122121457489	35.028	0.84303	35.028	34.818	35.661	0					44	17	5	0	0	0	0.12515	1	1730	1730		90.37	8.0648	1	1952500			13301	7694	10902	10914	14470	14470					-0.056774434183580524
GEEPELIKI	9	Unmodified	_GEEPELIKI_					0	0	0			REV__nc|ENSG00000116809|Q13105-3|ZBTB17	REV__nc|ENSG00000116809|Q13105-3|ZBTB17	MULTI-MSMS	OvCa99_classI_Rep5	1	514.288330078125	2	514.28714	1026.55973	1.3938	0.00071682	-0.018852	-9.6953E-06	1.375	0.00070713	514.287025000692	130.33	1.2393	130.33	129.77	131.01	0					41	25	3	0	0	0	0.36502	1	15131	15131		55.504	0	1	171600	+		13302	18321	10903	10915	14471	14471					0.04750903520562133
GEEPELIKI	9	Unmodified	_GEEPELIKI_					0	0	0			REV__nc|ENSG00000116809|Q13105-3|ZBTB17	REV__nc|ENSG00000116809|Q13105-3|ZBTB17	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	514.28714	1026.55973	1.3938	0.00071682	-0.018852	-9.6953E-06	1.375	0.00070713	514.287025000692	130.33	1.2393	130.33	129.77	131.01	0	0	0	NaN	55.504	41	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171600	+		13303	18321	10903	10915							0.04750903520562133
GEEPGIKSQL	10	Unmodified	_GEEPGIKSQL_					0	0	0		ENSG00000134049|ENST00000256433|IER3IP1	ENSG00000134049|ENST00000256433|IER3IP1	ENSG00000134049|ENST00000256433|IER3IP1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.2814331054688	2	529.279846	1056.54514	0.30449	0.00016116	-0.45747	-0.00024213	-0.15298	-8.0971E-05	529.2794676260107	63.16	0.78806	63.16	62.902	63.69	0					45	19	4	0	0	0	0.18515	1	5668	5668		96.665	21.622	1	4694300			13304	4255	10904	10916	14472	14472					0.019128313724195323
GEEQIRGAL	9	Unmodified	_GEEQIRGAL_					0	0	0		VCL-ADK|2|fusion;VCL|p.R832Efs*23|1|0.05|ENSG00000035403|chr10:74107288-74107288|C/-|frameshift_variant;VCL-ADK|1|fusion;VCL-ADK|4|fusion;nc|ENSG00000035403|P18206-2|VCL;VCL-ADK|13|fusion;ENSG00000035403|ENST00000211998|VCL	VCL-ADK|2|fusion	VCL-ADK|2|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	486.75994873046875	2	486.759081	971.503609	-0.44943	-0.00021876	-0.10137	-4.9342E-05	-0.55079	-0.0002681	486.75886467130215	61.298	1.0943	61.298	60.859	61.953	0					41	25	2	0	0	0	0.10502	1	5387	5387		95.815	29.386	1	2597900			13305	1081	10905	10917	14473	14473					0.016716954037633514
GEEQNKEAL	9	Unmodified	_GEEQNKEAL_					0	0	0		ENSG00000108953|ENST00000264335|YWHAE;nc|ENSG00000108953|P62258-2|YWHAE;ENST00000435487.1_1_7:56635601-56635700:-|nuORF;NEO1-YWHAE|1|fusion	ENSG00000108953|ENST00000264335|YWHAE;NEO1-YWHAE|1|fusion	ENSG00000108953|ENST00000264335|YWHAE	MULTI-MSMS	OvCa99_classI_Rep5	1	509.2460632324219	2	509.246003	1016.47745	-0.22405	-0.0001141	-0.53068	-0.00027025	-0.75473	-0.00038434	509.2457618868336	35.762	0.96764	35.762	35.52	36.487	0					54	20	5	0	0	0	0.021573	1	1823	1823		145.16	31.744	1	2931800			13306	2689;15425	10906	10918	14474	14474					-0.030126185583753795
GEEQRGGGTL	10	Unmodified	_GEEQRGGGTL_					0	0	0		ENST00000588777.1_1_19:12986806-12989487:-|nuORF;nc|ENSG00000105612|O00115-2|DNASE2;ENSG00000105612|ENST00000222219|DNASE2	ENST00000588777.1_1_19:12986806-12989487:-|nuORF	ENST00000588777.1_1_19:12986806-12989487:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	502.2441101074219	2	502.243795	1002.47304	-0.95817	-0.00048124	0.10095	5.0702E-05	-0.85722	-0.00043053	502.24384078314125	34.221	0.80809	34.221	33.824	34.632	0					23	16	3	0	0	0	0.29438	1	1634	1634		81.525	12.738	1	213630			13307	2474	10907	10919	14475	14475					-0.028100829812615302
GEERGLAGGAL	11	Unmodified	_GEERGLAGGAL_					0	0	0		ENST00000330912.2_X:152722046-152722684:-|nuORF	ENST00000330912.2_X:152722046-152722684:-|nuORF	ENST00000330912.2_X:152722046-152722684:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	515.2705688476562	2	515.269813	1028.52507	0.40633	0.00020937	3.4583	0.001782	3.8647	0.0019913	515.2713126551835	103.15	2.4022	101.67	101.15	103.55	-1.4763					87	45	4	0	0	0	0.34051	1	7135	7135		65.465	1.2581	1	356040			13308	10441	10908	10920	14476	14476					0.011950804324897035
GEERPIGHLHL	11	Unmodified	_GEERPIGHLHL_					0	0	0		ENSG00000123989|ENST00000243776|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF	ENSG00000123989|ENST00000243776|CHPF	ENSG00000123989|ENST00000243776|CHPF	MULTI-MSMS	OvCa99_classI_Rep5	1	419.8983459472656	3	419.894799	1256.66257	-0.082108	-3.4477E-05	-0.20259	-8.5066E-05	-0.2847	-0.00011954	419.89464713103615	59.949	0.58811	59.949	59.726	60.314	0					33	14	3	0	0	0	0.45478	1	5202	5202		57.149	0	1	2152700			13309	3619	10909	10921	14477	14477					0.04450409031892377
GEERVKQKDL	10	Unmodified	_GEERVKQKDL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.H2029Qfs*32|1|0.9|ENSG00000196924|chrX:154353130-154353140|TGCTGGCCACG/-|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OvCa99_classI_Rep5	1	601.3304443359375	2	601.330402	1200.64625	-0.17602	-0.00010585	-0.09167	-5.5124E-05	-0.26769	-0.00016097	601.3302805333767	29.561	0.54709	29.561	29.288	29.835	0					17	10	2	0	0	0	0.57851	1	1066	1066		26.063	0	1	340970			13310	8659	10910	10922	14478	14478					0.053952830751541114
GEESKVARL	9	Unmodified	_GEESKVARL_					0	0	0		nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8;ENSG00000153339|ENST00000283351|TRAPPC8	nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	nc|ENSG00000153339|Q9Y2L5-2|TRAPPC8	MULTI-MSMS	OvCa99_classI_Rep5	1	494.7754821777344	2	494.774731	987.534909	-0.37894	-0.00018749	-0.03299	-1.6323E-05	-0.41193	-0.00020381	494.77470614655635	40.862	0.761	40.862	40.479	41.24	0					33	16	4	0	0	0	0.13504	1	2506	2506		87.696	7.9839	1	1124800			13311	5678	10911	10923	14479	14479					0.04064268437866758
GEESTGTNI	9	Unmodified	_GEESTGTNI_					0	0	0		nc|ENSG00000161249|Q6E0U4-7|DMKN;nc|ENSG00000161249|Q6E0U4-3|DMKN;nc|ENSG00000161249|Q6E0U4-5|DMKN;nc|ENSG00000161249|Q6E0U4-6|DMKN;nc|ENSG00000161249|Q6E0U4-4|DMKN;CON__A3EZ79;nc|ENSG00000161249|Q6E0U4-16|DMKN;nc|ENSG00000161249|Q6E0U4-2|DMKN;ENSG00000161249|ENST00000339686|DMKN;CON__A3EZ82	nc|ENSG00000161249|Q6E0U4-7|DMKN	nc|ENSG00000161249|Q6E0U4-7|DMKN	MULTI-SECPEP	OvCa99_classI_Rep5	1	453.7651062011719	2	454.203804	906.393055	-0.78854	-0.00035816	-2.0065	-0.00091137	-2.7951	-0.0012695	454.2026343711694	65.851	0.39375	65.851	65.665	66.059	0					15	9	2	0	0	0	0.027353	1	6086	6086		52.937	28.734	1	228960		+	13312	601	10912	10924	14480	14480					-0.06388569375133102
GEETEHNVL	9	Unmodified	_GEETEHNVL_					0	0	0		nc|ENSG00000164188|Q86VV4-3|RANBP3L;ENSG00000164188|ENST00000296604|RANBP3L;nc|ENSG00000164188|Q86VV4-2|RANBP3L	nc|ENSG00000164188|Q86VV4-3|RANBP3L	nc|ENSG00000164188|Q86VV4-3|RANBP3L	MULTI-MSMS	OvCa99_classI_Rep5	1	514.2395629882812	2	514.238178	1026.4618	-0.97392	-0.00050083	0.5387	0.00027702	-0.43522	-0.00022381	514.2383180616902	49.966	0.65274	49.966	49.723	50.376	0					31	14	3	0	0	0	0.22621	1	3770	3770		71.877	5.4482	1	1546200			13313	6431	10913	10925	14481	14481					-0.05036905075417053
GEEYDKLRISE	11	Unmodified	_GEEYDKLRISE_					0	0	0			REV__tr|A0A553SQ85|A0A553SQ85_NIACIM20/M25/M40familymetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_23030PE=4SV=1	REV__tr|A0A553SQ85|A0A553SQ85_NIACIM20/M25/M40familymetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_23030PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	447.75689697265625	3	446.88938	1337.64631	-0.53717	-0.00024005	-1.9047	-0.00085121	-2.4419	-0.0010913	447.2234089752436	92.288	0.60924	89.745	89.567	90.176	-2.5425					18	11	2	0	0	0	0.026174	1	8024	8024		12.433	2.3289	1	14148	+		13314	30613	10914	10926	14482	14482					-0.009007617155248226
GEFADPFKL	9	Unmodified	_GEFADPFKL_					0	0	0		NUP155|p.W1314Gfs*4|1|0.1|ENSG00000113569|chr5:37292977-37292977|G/-|frameshift_variant;nc|ENSG00000113569|O75694-2|NUP155;ENSG00000113569|ENST00000231498|NUP155	NUP155|p.W1314Gfs*4|1|0.1|ENSG00000113569|chr5:37292977-37292977|G/-|frameshift_variant	NUP155|p.W1314Gfs*4|1|0.1|ENSG00000113569|chr5:37292977-37292977|G/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	512.2614135742188	2	512.260925	1022.5073	2.569	0.001316	-0.16403	-8.4027E-05	2.4049	0.0012319	512.2607528010772	115.75	0.78706	115.75	115.49	116.28	0					27	16	2	0	0	0	0.1944	2	13214	13214;13238		77.318	13.11	1	2489300			13315	2976	10915	10927	14483;14484	14483					-0.0030563482238221695
GEFADPFKL	9	Unmodified	_GEFADPFKL_					0	0	0		NUP155|p.W1314Gfs*4|1|0.1|ENSG00000113569|chr5:37292977-37292977|G/-|frameshift_variant;nc|ENSG00000113569|O75694-2|NUP155;ENSG00000113569|ENST00000231498|NUP155	NUP155|p.W1314Gfs*4|1|0.1|ENSG00000113569|chr5:37292977-37292977|G/-|frameshift_variant	NUP155|p.W1314Gfs*4|1|0.1|ENSG00000113569|chr5:37292977-37292977|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.2628784179688	2	512.260925	1022.5073	-0.27202	-0.00013935	-0.29541	-0.00015133	-0.56744	-0.00029068	512.2607018511965	116.71	1.1918	115.34	114.94	116.14	-1.3645					40	22	2	0	0	0	0.42576	1	10895	10895		49.536	0	1	178360			13316	2976	10915	10927	14485	14485					-0.0030563482238221695
GEFAKVLEL	9	Unmodified	_GEFAKVLEL_					0	0	0		nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;PPP2R1A|p.M499*|1|0.2|ENSG00000105568|chr19:52221110-52221110|A/-|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A	nc|ENSG00000137713|P30154-4|PPP2R1B	nc|ENSG00000137713|P30154-4|PPP2R1B	MULTI-MSMS	OvCa99_classI_Rep5	1	503.2850036621094	2	503.2844	1004.55425	2.0664	0.00104	-0.9685	-0.00048743	1.0979	0.00055257	503.284255421912	110.42	0.97723	110.42	110.18	111.16	0					46	21	3	0	0	0	0.13326	1	12529	12529		88.177	0	1	1152500			13317	4608	10916	10928	14486	14486					0.0521522472874949
GEFAKVLEL	9	Unmodified	_GEFAKVLEL_					0	0	0		nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;PPP2R1A|p.M499*|1|0.2|ENSG00000105568|chr19:52221110-52221110|A/-|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A	nc|ENSG00000137713|P30154-4|PPP2R1B	nc|ENSG00000137713|P30154-4|PPP2R1B	MULTI-MSMS	OvCa9_classI_Rep2	2	503.28216552734375	2	503.2844	1004.55425	-0.14905	-7.5014E-05	-0.1132	-5.6969E-05	-0.26224	-0.00013198	503.2841638760596	111.54	1.5769	111.4	111.03	112.61	-0.13961					88	31	4	0	0	0	0.13326	4	10548	10531;10541;10548;10553		88.177	0	1	340990			13318	4608	10916	10928	14487;14488;14489;14490	14489					0.0521522472874949
GEFAKVLEL	9	Unmodified	_GEFAKVLEL_					0	0	0		nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;PPP2R1A|p.M499*|1|0.2|ENSG00000105568|chr19:52221110-52221110|A/-|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A	nc|ENSG00000137713|P30154-4|PPP2R1B	nc|ENSG00000137713|P30154-4|PPP2R1B	MULTI-MSMS	OvCa9_classI_Rep3	3	503.28131103515625	2	503.2844	1004.55425	1.2036	0.00060574	-1.4142	-0.00071176	-0.21066	-0.00010602	503.2835348330118	112.57	2.3947	111.49	110.48	112.87	-1.0753					102	47	4	0	0	0	0.094791	6	8222	8222;8227;8230;8236;8251;8255		98.582	0	1	395070			13319	4608	10916	10928	14491;14492;14493;14494;14495;14496	14491					0.0521522472874949
GEFAKVLEL	9	Unmodified	_GEFAKVLEL_					0	0	0		nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;PPP2R1A|p.M499*|1|0.2|ENSG00000105568|chr19:52221110-52221110|A/-|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A	nc|ENSG00000137713|P30154-4|PPP2R1B	nc|ENSG00000137713|P30154-4|PPP2R1B	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.28228759765625	2	503.2844	1004.55425	-0.10977	-5.5244E-05	-0.34007	-0.00017115	-0.44984	-0.0002264	503.28403729511336	112.98	2.1932	111.53	110.54	112.73	-1.4461					96	43	4	0	0	0	0.14445	1	10454	10454		85.862	0	1	450900			13320	4608	10916	10928	14497	14497					0.0521522472874949
GEFEKKYVA	9	Unmodified	_GEFEKKYVA_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	OvCa9_classI_Rep2	2	535.7786254882812	2	535.779482	1069.54441	-2.1218	-0.0011368	1.8493	0.00099083	-0.27249	-0.00014599	535.7803470921477	51.141	1.3889	48.347	47.975	49.364	-2.794					46	27	2	0	0	0	0.46356	1	3343	3343		45.972	5.1941	1	284620			13321	4131	10917	10929	14498	14498					0.0124203672337444
GEFEKKYVA	9	Unmodified	_GEFEKKYVA_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.7789916992188	2	535.779482	1069.54441	-1.3282	-0.00071164	1.088	0.0005829	-0.24027	-0.00012873	535.7798478582694	51.393	1.4113	48.219	47.972	49.384	-3.1734					64	27	4	0	0	0	0.1944	4	3033	3009;3020;3033;3047		77.318	12.936	1	1110700			13322	4131	10917	10929	14499;14500;14501;14502	14501					0.0124203672337444
GEFEKKYVATL	11	Unmodified	_GEFEKKYVATL_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	OvCa99_classI_Rep5	1	642.846923828125	2	642.845353	1283.67615	0.02396	1.5403E-05	0.31033	0.0001995	0.33429	0.0002149	642.8451609501046	73.086	0.67636	73.086	72.764	73.44	0					28	14	3	0	0	0	0.048622	1	7158	7158		122.94	54.093	1	3171800			13323	4131	10918	10930	14503	14503					0.045662220204803816
GEFEKKYVATL	11	Unmodified	_GEFEKKYVATL_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	OvCa9_classI_Rep2	2	642.8456420898438	2	642.845353	1283.67615	-1.5084	-0.00096965	1.0041	0.00064548	-0.50427	-0.00032417	642.8459796671235	75.718	3.2161	73.864	73.429	76.645	-1.854					181	61	6	0	0	0	1.5887E-08	13	6244	6229;6233;6238;6244;6250;6256;6262;6268;6274;6280;6286;6292;6300		196.52	97.888	1	4423600			13324	4131	10918	10930	14504;14505;14506;14507;14508;14509;14510;14511;14512;14513;14514;14515;14516	14507					0.045662220204803816
GEFEKKYVATL	11	Unmodified	_GEFEKKYVATL_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	OvCa9_classI_Rep3	3	642.846435546875	2	642.845353	1283.67615	-0.88731	-0.0005704	0.48155	0.00030956	-0.40575	-0.00026084	642.8456267035348	76.023	3.9605	73.652	73.317	77.277	-2.3715					222	77	6	0	0	0	1.9658E-09	17	3924	3877;3882;3887;3893;3899;3905;3912;3918;3924;3930;3936;3943;3949;3956;3962;3967;3975		201.61	106.97	1	6021100			13325	4131	10918	10930	14517;14518;14519;14520;14521;14522;14523;14524;14525;14526;14527;14528;14529;14530;14531;14532;14533	14525					0.045662220204803816
GEFEKKYVATL	11	Unmodified	_GEFEKKYVATL_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	OvCa9_classI_Rep4_	4	642.8469848632812	2	642.845353	1283.67615	0.0080592	5.1808E-06	-0.46537	-0.00029916	-0.45731	-0.00029398	642.8450034328104	76.794	2.7262	73.856	73.504	76.231	-2.9389					168	56	6	0	0	0	4.8333E-09	8	6121	6099;6109;6121;6133;6145;6158;6170;6184		200.56	106.97	1	5941500			13326	4131	10918	10930	14534;14535;14536;14537;14538;14539;14540;14541	14536					0.045662220204803816
GEFGKKADGLL	11	Unmodified	_GEFGKKADGLL_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;EMC1|p.Q491Hfs*45|1|0.04|ENSG00000127463|chr1:19233095-19233095|C/-|frameshift_variant;EMC1|p.S824Pfs*40|1|0.04|ENSG00000127463|chr1:19222742-19222743|-/GA|frameshift_variant	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	OvCa99_classI_Rep5	1	567.8128662109375	2	567.811313	1133.60807	-0.27683	-0.00015719	-0.37173	-0.00021107	-0.64856	-0.00036826	567.8108777638071	67.767	0.74397	67.767	67.489	68.233	0					32	18	2	0	0	0	0.2322	1	6366	6366		75.652	17.422	1	2891600			13327	3832	10919	10931	14542	14542					0.04661397160475644
GEFIIGRVI	9	Unmodified	_GEFIIGRVI_					0	0	0		nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;ENSG00000072163|ENST00000355119|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;ENST00000469300.6_1_2:128400496-128412764:-|nuORF;nc|ENSG00000169756|P48059-3|LIMS1;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;ENSG00000256671|ENST00000632897|LIMS4	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	MSMS	OvCa9_classI_Rep2	2	502.29974365234375	2	502.300384	1002.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.17	1	114.05	113.55	114.55	-0.11777								0	0	0	0.16607	1	10851	10851		62.107	0	1				13328	1467	10920	10932	14543	14543					0.08502637202559526
GEFIIGRVI	9	Unmodified	_GEFIIGRVI_					0	0	0		nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;ENSG00000072163|ENST00000355119|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;ENST00000469300.6_1_2:128400496-128412764:-|nuORF;nc|ENSG00000169756|P48059-3|LIMS1;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;ENSG00000256671|ENST00000632897|LIMS4	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	MSMS	OvCa9_classI_Rep2	2	502.300048828125	2	502.300384	1002.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.22	1	114.1	113.6	114.6	-0.11777								0	0	0	0.03228	1	10857	10857		87.696	0	1				13329	1467	10920	10932	14544	14544					0.08502637202559526
GEFIIGRVI	9	Unmodified	_GEFIIGRVI_					0	0	0		nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;ENSG00000072163|ENST00000355119|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;ENST00000469300.6_1_2:128400496-128412764:-|nuORF;nc|ENSG00000169756|P48059-3|LIMS1;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;ENSG00000256671|ENST00000632897|LIMS4	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	MSMS	OvCa9_classI_Rep2	2	502.300537109375	2	502.300384	1002.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.27	1	114.15	113.65	114.65	-0.11777								0	0	0	0.054374	1	10863	10863		77.318	0	1				13330	1467	10920	10932	14545	14545					0.08502637202559526
GEFIIGRVI	9	Unmodified	_GEFIIGRVI_					0	0	0		nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;ENSG00000072163|ENST00000355119|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;ENST00000469300.6_1_2:128400496-128412764:-|nuORF;nc|ENSG00000169756|P48059-3|LIMS1;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;ENSG00000256671|ENST00000632897|LIMS4	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	MSMS	OvCa9_classI_Rep2	2	502.30010986328125	2	502.300384	1002.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.31	1	114.2	113.7	114.7	-0.11777								0	0	0	0.03228	1	10869	10869		87.696	0	1				13331	1467	10920	10932	14546	14546					0.08502637202559526
GEFIIGRVI	9	Unmodified	_GEFIIGRVI_					0	0	0		nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;ENSG00000072163|ENST00000355119|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;ENST00000469300.6_1_2:128400496-128412764:-|nuORF;nc|ENSG00000169756|P48059-3|LIMS1;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;ENSG00000256671|ENST00000632897|LIMS4	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	MSMS	OvCa9_classI_Rep2	2	502.30047607421875	2	502.300384	1002.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.36	1	114.25	113.75	114.75	-0.11777								0	0	0	0.054374	1	10875	10875		77.318	0	1				13332	1467	10920	10932	14547	14547					0.08502637202559526
GEFIIGRVI	9	Unmodified	_GEFIIGRVI_					0	0	0		nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;ENSG00000072163|ENST00000355119|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;ENST00000469300.6_1_2:128400496-128412764:-|nuORF;nc|ENSG00000169756|P48059-3|LIMS1;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;ENSG00000256671|ENST00000632897|LIMS4	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	MSMS	OvCa9_classI_Rep2	2	502.300537109375	2	502.300384	1002.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.41	1	114.3	113.8	114.8	-0.11777								0	0	0	0.054374	1	10881	10881		77.318	0	1				13333	1467	10920	10932	14548	14548					0.08502637202559526
GEFIIGRVI	9	Unmodified	_GEFIIGRVI_					0	0	0		nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;ENSG00000072163|ENST00000355119|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;ENST00000469300.6_1_2:128400496-128412764:-|nuORF;nc|ENSG00000169756|P48059-3|LIMS1;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;ENSG00000256671|ENST00000632897|LIMS4	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	MSMS	OvCa9_classI_Rep2	2	502.30029296875	2	502.300384	1002.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.46	1	114.34	113.84	114.84	-0.11777								0	0	0	0.054374	1	10887	10887		77.318	7.69	1				13334	1467	10920	10932	14549	14549					0.08502637202559526
GEFIIGRVI	9	Unmodified	_GEFIIGRVI_					0	0	0		nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;ENSG00000072163|ENST00000355119|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;ENST00000469300.6_1_2:128400496-128412764:-|nuORF;nc|ENSG00000169756|P48059-3|LIMS1;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;ENSG00000256671|ENST00000632897|LIMS4	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	MULTI-MSMS	OvCa9_classI_Rep3	3	502.300048828125	2	502.300384	1002.58622	-0.68365	-0.0003434	0.058264	2.9266E-05	-0.62539	-0.00031413	502.3003125192714	115.22	2.4195	114.17	113.65	116.07	-1.055					84	48	4	0	0	0	0.13504	10	8542	8530;8536;8542;8548;8554;8560;8567;8573;8580;8586		87.696	0	1	913900			13335	1467	10920	10932	14550;14551;14552;14553;14554;14555;14556;14557;14558;14559	14552					0.08502637202559526
GEFIIGRVI	9	Unmodified	_GEFIIGRVI_					0	0	0		nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;ENSG00000072163|ENST00000355119|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;ENST00000469300.6_1_2:128400496-128412764:-|nuORF;nc|ENSG00000169756|P48059-3|LIMS1;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;ENSG00000256671|ENST00000632897|LIMS4	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	MSMS	OvCa9_classI_Rep4_	4	502.3001403808594	2	502.300384	1002.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.38	1	113.98	113.48	114.48	-1.3977								0	0	0	0.12679	1	10739	10739		67.494	2.0283	1				13336	1467	10920	10932	14560	14560					0.08502637202559526
GEFIIGRVI	9	Unmodified	_GEFIIGRVI_					0	0	0		nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;ENSG00000072163|ENST00000355119|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;ENST00000469300.6_1_2:128400496-128412764:-|nuORF;nc|ENSG00000169756|P48059-3|LIMS1;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;ENSG00000256671|ENST00000632897|LIMS4	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	MSMS	OvCa9_classI_Rep4_	4	502.29986572265625	2	502.300384	1002.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.46	1	114.06	113.56	114.56	-1.3977								0	0	0	0.054374	1	10748	10748		77.318	0	1				13337	1467	10920	10932	14561	14561					0.08502637202559526
GEFIIGRVI	9	Unmodified	_GEFIIGRVI_					0	0	0		nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;ENSG00000072163|ENST00000355119|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;ENST00000469300.6_1_2:128400496-128412764:-|nuORF;nc|ENSG00000169756|P48059-3|LIMS1;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;ENSG00000256671|ENST00000632897|LIMS4	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	MSMS	OvCa9_classI_Rep4_	4	502.3004150390625	2	502.300384	1002.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.56	1	114.16	113.66	114.66	-1.3977								0	0	0	0.03228	1	10760	10760		87.696	0	1				13338	1467	10920	10932	14562	14562					0.08502637202559526
GEFIIGRVI	9	Unmodified	_GEFIIGRVI_					0	0	0		nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;ENSG00000072163|ENST00000355119|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;ENST00000469300.6_1_2:128400496-128412764:-|nuORF;nc|ENSG00000169756|P48059-3|LIMS1;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;ENSG00000256671|ENST00000632897|LIMS4	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	MSMS	OvCa9_classI_Rep4_	4	502.300048828125	2	502.300384	1002.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.66	1	114.26	113.76	114.76	-1.3977								0	0	0	0.054374	1	10773	10773		77.318	0	1				13339	1467	10920	10932	14563	14563					0.08502637202559526
GEFIIGRVI	9	Unmodified	_GEFIIGRVI_					0	0	0		nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;ENSG00000072163|ENST00000355119|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;ENST00000469300.6_1_2:128400496-128412764:-|nuORF;nc|ENSG00000169756|P48059-3|LIMS1;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;ENSG00000256671|ENST00000632897|LIMS4	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	MSMS	OvCa9_classI_Rep4_	4	502.3003234863281	2	502.300384	1002.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.77	1	114.37	113.87	114.87	-1.3977								0	0	0	0.16679	1	10786	10786		60.118	0	1				13340	1467	10920	10932	14564	14564					0.08502637202559526
GEFIIGRVI	9	Unmodified	_GEFIIGRVI_					0	0	0		nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;ENSG00000072163|ENST00000355119|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;ENST00000469300.6_1_2:128400496-128412764:-|nuORF;nc|ENSG00000169756|P48059-3|LIMS1;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;ENSG00000256977|ENST00000480744|LIMS3;nc|ENSG00000256977|P0CW19-2|LIMS3;ENSG00000256671|ENST00000632897|LIMS4	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	MSMS	OvCa9_classI_Rep4_	4	502.3004150390625	2	502.300384	1002.58622	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.86	1	114.46	113.96	114.96	-1.3977								0	0	0	0.17408	1	10797	10797		42.864	0	1				13341	1467	10920	10932	14565	14565					0.08502637202559526
GEFMTHKL	8	Unmodified	_GEFMTHKL_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-3|CALD1	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	481.74334716796875	2	481.741845	961.469137	-0.32479	-0.00015647	0.33686	0.00016228	0.012069	5.8143E-06	481.74191710606823	53.898	0.76948	53.898	53.609	54.378	0					47	18	4	0	0	0	0.35821	1	4310	4310		96.19	19.416	1	2337700			13342	3559	10921	10933	14566	14566					-0.013138440087118397
GEFNEQVLRL	10	Unmodified	_GEFNEQVLRL_					0	0	0		ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	MULTI-MSMS	OvCa9_classI_Rep2	2	602.818603515625	2	602.81967	1203.62479	-0.91605	-0.00055221	-1.6103	-0.00097073	-2.5264	-0.0015229	602.8199147204749	104.94	1.4898	104.36	104.07	105.56	-0.57639					114	29	7	0	0	0	0.11648	2	9739	9733;9739		109.44	21.262	1	561490			13343	7076	10922	10934	14567;14568	14568					0.031118980464270862
GEFNEQVLRL	10	Unmodified	_GEFNEQVLRL_					0	0	0		ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	MULTI-MSMS	OvCa9_classI_Rep4_	4	602.8209228515625	2	602.81967	1203.62479	-0.13227	-7.9736E-05	-2.7255	-0.001643	-2.8577	-0.0017227	602.8195923129472	106.35	1.5038	104.33	103.95	105.45	-2.0161					109	28	7	0	0	0	0.22511	2	9695	9695;9707		90.601	8.5771	1	705980			13344	7076	10922	10934	14569;14570	14569					0.031118980464270862
GEFRAVTEL	9	Unmodified	_GEFRAVTEL_					0	0	0		ENSG00000196126|ENST00000360004|HLA-DRB1;ENST00000471184.5_1_6:33048250-33051373:+|nuORF;ENST00000469120.1_1_6:33043797-33048717:+|nuORF;ENSG00000223865|ENST00000418931|HLA-DPB1	ENSG00000196126|ENST00000360004|HLA-DRB1;ENST00000469120.1_1_6:33043797-33048717:+|nuORF	ENSG00000196126|ENST00000360004|HLA-DRB1	MULTI-MSMS	OvCa99_classI_Rep5	1	511.27069091796875	2	511.269281	1020.52401	2.1689	0.0011089	0.12366	6.3226E-05	2.2925	0.0011721	511.2692701038635	85.811	0.84534	85.811	85.544	86.389	0					53	20	4	0	0	0	0.22035	1	9018	9018		72.879	4.0924	1	4775600			13345	8566;9253	10923	10935	14571	14571					0.014568660635518427
GEFSEAREDM	10	Unmodified	_GEFSEAREDM_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000530835.1_1_11:90016856-90017168:+|nuORF;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000167552|ENST00000301071|TUBA1A	MULTI-MSMS	OvCa99_classI_Rep5	1	585.7418823242188	2	585.740228	1169.4659	-0.1287	-7.5384E-05	0.34894	0.00020439	0.22024	0.000129	585.7403047655384	62.218	0.50635	62.218	61.994	62.501	0					33	11	4	0	0	0	0.26708	1	5527	5527		84.817	21.511	1	1976600			13346	3593;6805;6806	10924	10936	14572	14572					-0.11205183644028693
GEFSEAREDM	10	Unmodified	_GEFSEAREDM_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000530835.1_1_11:90016856-90017168:+|nuORF;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000167552|ENST00000301071|TUBA1A	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	585.740228	1169.4659	-1.5263	-0.000894	0.92791	0.00054351	-0.59836	-0.00035048	586.2419813820724	65.958	0.48438	62.472	62.276	62.761	-3.4854	0.12714	0.0006276	NaN	84.817	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17156			13347	3593;6805;6806	10924	10936							-0.11205183644028693
GEGDFIHEPL	10	Unmodified	_GEGDFIHEPL_					0	0	0			REV__nc|ENSG00000091409|P23229-7|ITGA6	REV__nc|ENSG00000091409|P23229-7|ITGA6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.79443359375	2	557.264196	1112.51384	0.31408	0.00017503	-1.8415	-0.0010262	-1.5275	-0.0008512	557.7645130089774	62.779	0.43515	59.322	59.111	59.546	-3.4577					10	8	2	0	0	0	0.027198	1	4403	4403		9.1829	0	1	19093	+		13348	17248	10925	10937	14573	14573					-0.03791741661666492
GEGDGIIREL	10	Unmodified	_GEGDGIIREL_					0	0	0		ENSG00000138356|ENST00000374700|AOX1;ENST00000485106.5_1_2:201474101-201485848:+|nuORF	ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	MULTI-MSMS	OvCa9_classI_Rep2	2	529.7763061523438	2	529.77747	1057.54039	-0.92471	-0.00048989	-0.54575	-0.00028912	-1.4705	-0.00077902	529.7775095401722	93.912	2.0624	92.812	92.382	94.444	-1.0995					117	40	5	0	0	0	0.026604	7	8398	8370;8376;8382;8386;8392;8398;8404		140.11	51.904	1	1547200			13349	4677	10926	10938	14574;14575;14576;14577;14578;14579;14580	14579					0.013919472296720414
GEGDGIIREL	10	Unmodified	_GEGDGIIREL_					0	0	0		ENSG00000138356|ENST00000374700|AOX1;ENST00000485106.5_1_2:201474101-201485848:+|nuORF	ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	MULTI-MSMS	OvCa9_classI_Rep3	3	529.778076171875	2	529.77747	1057.54039	-0.65219	-0.00034551	-0.63292	-0.00033531	-1.2851	-0.00068082	529.7774860524519	94.57	2.098	92.675	92.307	94.404	-1.8956					111	41	4	0	0	0	0.0004544	7	6112	6102;6106;6112;6118;6125;6133;6139		182.39	61.77	1	2592600			13350	4677	10926	10938	14581;14582;14583;14584;14585;14586;14587	14583					0.013919472296720414
GEGDGIIREL	10	Unmodified	_GEGDGIIREL_					0	0	0		ENSG00000138356|ENST00000374700|AOX1;ENST00000485106.5_1_2:201474101-201485848:+|nuORF	ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.7783203125	2	529.77747	1057.54039	-1.8254	-0.00096704	0.4208	0.00022293	-1.4046	-0.00074411	529.7780164398157	95.197	1.7661	92.729	92.36	94.127	-2.4685					117	34	5	0	0	0	0.016395	5	8354	8345;8354;8366;8378;8390		152.06	48.004	1	2416300			13351	4677	10926	10938	14588;14589;14590;14591;14592	14589					0.013919472296720414
GEGDSVITQVL	11	Unmodified	_GEGDSVITQVL_					0	0	0		ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	MULTI-MSMS	OvCa99_classI_Rep5	1	559.2920532226562	2	559.290411	1116.56627	1.4059	0.00078633	0.84258	0.00047125	2.2485	0.0012576	559.2907964043234	123.96	0.81466	123.96	123.61	124.42	0					48	17	4	0	0	0	0.047208	2	14288	14288;14311		117.53	18.944	1	2178500			13352	6509	10927	10939	14593;14594	14593					0.012647966812892264
GEGDSVITQVL	11	Unmodified	_GEGDSVITQVL_					0	0	0		ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	MULTI-MSMS	OvCa9_classI_Rep2	2	559.2899780273438	2	559.290411	1116.56627	0.58769	0.00032869	-0.83148	-0.00046504	-0.24379	-0.00013635	559.2898256718978	123.34	1.5779	123.12	122.71	124.29	-0.21803					88	31	4	0	0	0	0.055892	2	11956	11956;11969		112.11	14.001	1	476500			13353	6509	10927	10939	14595;14596	14595					0.012647966812892264
GEGDSVITQVL	11	Unmodified	_GEGDSVITQVL_					0	0	0		ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	ENSG00000164985|ENST00000380733|PSIP1	MULTI-MSMS	OvCa9_classI_Rep3	3	559.2911376953125	2	559.290411	1116.56627	1.0679	0.00059727	-0.91057	-0.00050927	0.15734	8.7999E-05	559.289786703432	123.89	1.2949	122.85	122.51	123.81	-1.0377					64	24	4	0	0	0	0.079434	2	9581	9570;9581		101.46	9.3162	1	395230			13354	6509	10927	10939	14597;14598	14598					0.012647966812892264
GEGEGSKTAL	10	Unmodified	_GEGEGSKTAL_					0	0	0		nc|ENSG00000103855|Q5ZPR3-2|CD276;nc|ENSG00000103855|Q5ZPR3-4|CD276;ENSG00000103855|ENST00000318443|CD276	nc|ENSG00000103855|Q5ZPR3-2|CD276	nc|ENSG00000103855|Q5ZPR3-2|CD276	MULTI-MSMS	OvCa99_classI_Rep5	1	474.73529052734375	2	474.735271	947.45599	-0.59234	-0.0002812	0.45986	0.00021831	-0.13248	-6.2891E-05	474.7354353873938	36.282	0.67725	36.282	36.074	36.751	0					32	14	4	0	0	0	0.33877	1	1895	1895		76.17	20.665	1	1096100			13355	2342	10928	10940	14599	14599					-0.019840035870970496
GEGFHAGGLI	10	Unmodified	_GEGFHAGGLI_					0	0	0			REV__ENSG00000177575|ENST00000432237|CD163	REV__ENSG00000177575|ENST00000432237|CD163	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.806640625	2	479.243067	956.47158	0.29917	0.00014338	4.0046	0.0019192	4.3038	0.0020626	479.2449944840908	56.694	0.75837	53.399	52.92	53.679	-3.2944					24	14	2	0	0	0	0.026697	1	3604	3604		21.96	0	1	47289	+		13356	22015	10929	10941	14600	14600					-0.008396722793804656
GEGFSAMHL	9	Unmodified	_GEGFSAMHL_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.7484436035156	2	474.715827	947.417102	0.18177	8.6288E-05	3.8201	0.0018135	4.0019	0.0018998	474.7175014818013	31.895	0.34788	31.895	31.708	32.055	0					15	6	3	0	0	0	0.027456	1	1363	1363		38.806	0	1	55568	+		13357	17630	10930	10942	14601	14601					-0.05871007422445018
GEGGALMVK	9	Unmodified	_GEGGALMVK_					0	0	0		tr|A0A7D6ZU92|A0A7D6ZU92_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23235PE=4SV=1	tr|A0A7D6ZU92|A0A7D6ZU92_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23235PE=4SV=1	tr|A0A7D6ZU92|A0A7D6ZU92_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23235PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	432.22296142578125	2	431.228571	860.442588	0.83768	0.00036123	-1.2157	-0.00052424	-0.37801	-0.00016301	431.2279098981979	63.99	0.48611	60.515	60.298	60.784	-3.475					11	9	2	0	0	0	0.027462	1	4516	4516		21.96	0	1	16404			13358	35771	10931	10943	14602	14602					0.006784670999650189
GEGHFGKVEL	10	Unmodified	_GEGHFGKVEL_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;ENST00000481702.1_1_1:65305238-65306936:-|nuORF	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.819580078125	2	536.774731	1071.53491	0.072036	3.8667E-05	-0.30841	-0.00016554	-0.23637	-0.00012688	536.774717424913	68.088	1.0771	64.598	64.381	65.459	-3.4902					41	21	3	0	0	0	0.026659	1	5045	5045		30.318	0	1	222910			13359	6182	10932	10944	14603	14603					0.00200268437856721
GEGHTQDTEL	10	Unmodified	_GEGHTQDTEL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	MULTI-MSMS	OvCa99_classI_Rep5	1	543.7376708984375	2	543.738542	1085.46253	-0.6979	-0.00037948	0.14602	7.9397E-05	-0.55188	-0.00030008	543.738525458101	40.037	0.87117	40.037	39.84	40.711	0					40	18	4	0	0	0	0.13794	2	2393	2393;2416		104.01	27.239	1	3111800			13360	9006	10933	10945	14604;14605	14604					-0.07678110426377316
GEGIRRKD	8	Unmodified	_GEGIRRKD_					0	0	0			REV__tr|A0A553SHW1|A0A553SHW1_NIACIFAD-bindingoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_13725PE=4SV=1	REV__tr|A0A553SHW1|A0A553SHW1_NIACIFAD-bindingoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_13725PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.7656555175781	2	465.759415	929.504277	-0.50558	-0.00023548	3.6279	0.0016897	3.1224	0.0014543	465.76080731998456	69.173	0.6857	65.684	65.459	66.145	-3.4894					27	13	3	0	0	0	0.028476	1	5141	5141		17.365	11.052	1	98462	+		13361	29844	10934	10946	14606	14606					0.03670534843467976
GEGKHPEKL	9	Unmodified	_GEGKHPEKL_					0	0	0		ENST00000489327.1_1_2:69705990-69736406:-|nuORF;nc|ENSG00000115977|Q2M2I8-2|AAK1;ENSG00000115977|ENST00000409085|AAK1	ENST00000489327.1_1_2:69705990-69736406:-|nuORF	ENST00000489327.1_1_2:69705990-69736406:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	497.7691650390625	2	497.769448	993.524344	-0.8312	-0.00041374	0.77845	0.00038749	-0.052743	-2.6254E-05	497.7696717508879	25.967	0.54897	25.967	25.793	26.342	0					19	10	3	0	0	0	0.16264	1	630	630		82.75	18.543	1	232790			13362	3145	10935	10947	14607	14607					0.027322857834292336
GEGKLFSL	8	Unmodified	_GEGKLFSL_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	OvCa9_classI_Rep2	2	425.73748779296875	2	425.737086	849.459619	-0.3064	-0.00013045	0.43115	0.00018356	0.12474	5.3108E-05	425.7371449934775	95.209	1.5873	94.181	93.824	95.411	-1.0281					88	31	4	0	0	0	0.064388	3	8544	8544;8555;8563		152.47	14.166	1	533990			13363	4134	10936	10948	14608;14609;14610	14608					0.028867109774296296
GEGKLFSL	8	Unmodified	_GEGKLFSL_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	OvCa9_classI_Rep3	3	425.73785400390625	2	425.737086	849.459619	-0.19568	-8.3306E-05	0.10843	4.6163E-05	-0.087245	-3.7143E-05	425.73699107724866	95.942	1.7724	94.114	93.83	95.602	-1.8286					84	34	4	0	0	0	0.041788	5	6294	6270;6275;6280;6286;6294		171.38	14.231	1	708590			13364	4134	10936	10948	14611;14612;14613;14614;14615	14615					0.028867109774296296
GEGKLFSL	8	Unmodified	_GEGKLFSL_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	425.7379150390625	2	425.737086	849.459619	1.0285	0.00043788	-0.8692	-0.00037005	0.15933	6.7832E-05	425.7366052806573	96.621	1.6646	94.195	93.913	95.577	-2.4256					79	32	4	0	0	0	0.21559	2	8541	8529;8541		122.18	14.088	1	775360			13365	4134	10936	10948	14616;14617	14617					0.028867109774296296
GEGKLFSLEL	10	Unmodified	_GEGKLFSLEL_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	OvCa9_classI_Rep2	2	546.8001098632812	2	546.800414	1091.58628	-1.2334	-0.00067443	0.83784	0.00045813	-0.39557	-0.0002163	546.8008074536672	120.16	2.025	119.99	119.69	121.72	-0.17137					101	40	5	0	0	0	6.83E-06	11	11577	11567;11572;11577;11583;11589;11595;11602;11610;11616;11622;11628		190.62	54.529	1	1135600			13366	4134	10937	10949	14618;14619;14620;14621;14622;14623;14624;14625;14626;14627;14628	14620					0.04414592411899321
GEGKLFSLEL	10	Unmodified	_GEGKLFSLEL_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	OvCa9_classI_Rep3	3	546.7998657226562	2	546.800414	1091.58628	0.80369	0.00043946	-1.3807	-0.00075495	-0.57697	-0.00031549	546.7995986373286	121.01	1.9317	119.99	119.71	121.64	-1.0271					88	36	3	0	0	0	4.6181E-07	13	9262	9234;9239;9244;9250;9256;9262;9268;9274;9280;9287;9294;9300;9308		204.42	68.156	1	1681800			13367	4134	10937	10949	14629;14630;14631;14632;14633;14634;14635;14636;14637;14638;14639;14640;14641	14634					0.04414592411899321
GEGKLFSLEL	10	Unmodified	_GEGKLFSLEL_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.7990112304688	2	546.800414	1091.58628	-0.72378	-0.00039576	0.2096	0.00011461	-0.51417	-0.00028115	546.8004745949249	121.35	1.8814	120.01	119.69	121.57	-1.3479					95	36	5	0	0	0	0.0011056	6	11450	11416;11427;11438;11450;11460;11473		177.3	54.335	1	1446200			13368	4134	10937	10949	14642;14643;14644;14645;14646;14647	14645					0.04414592411899321
GEGKNGTIEL	10	Unmodified	_GEGKNGTIEL_					0	0	0		ENST00000463632.1_1_7:7678661-7680452:-|nuORF;ENST00000462723.1_1_7:7678661-7680049:-|nuORF;ENSG00000106399|ENST00000223129|RPA3	ENST00000463632.1_1_7:7678661-7680452:-|nuORF	ENST00000463632.1_1_7:7678661-7680452:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	509.2644348144531	2	509.264196	1016.51384	-0.007519	-3.8292E-06	-0.3723	-0.0001896	-0.37982	-0.00019343	509.2638764494992	60.747	0.81193	60.747	60.477	61.289	0					44	18	4	0	0	0	0.12738	2	5303	5303;5334		106.68	23.933	1	5030100			13369	2549	10938	10950	14648;14649	14648					0.006242583383254896
GEGKPTPAL	9	Unmodified	_GEGKPTPAL_					0	0	0		ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT	ENST00000409258.2_1_2:86386442-86398424:-|nuORF	ENST00000409258.2_1_2:86386442-86398424:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	435.2403259277344	2	435.239993	868.465432	-0.035892	-1.5621E-05	0.31683	0.0001379	0.28094	0.00012228	435.2400223687378	49.482	0.82409	49.482	49.164	49.988	0					39	18	3	0	0	0	0.010619	1	3690	3690		166.78	55.134	1	2035700			13370	4124	10939	10951	14650	14650					0.02593809489076193
GEGKPTPAL	9	Unmodified	_GEGKPTPAL_					0	0	0		ENST00000409258.2_1_2:86386442-86398424:-|nuORF;ENST00000474969.5_1_2:86385703-86422514:-|nuORF;nc|ENSG00000132305|Q16891-3|IMMT;nc|ENSG00000132305|Q16891-2|IMMT;nc|ENSG00000132305|Q16891-4|IMMT;ENSG00000132305|ENST00000410111|IMMT	ENST00000409258.2_1_2:86386442-86398424:-|nuORF	ENST00000409258.2_1_2:86386442-86398424:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	435.2459716796875	2	435.239993	868.465432	-0.35563	-0.00015478	1.6601	0.00072253	1.3044	0.00056774	435.2402664734223	53.43	2.0267	50.222	49.349	51.376	-3.208					97	39	4	0	0	0	0.12365	1	3257	3257		90.777	3.0224	1	337520			13371	4124	10939	10951	14651	14651					0.02593809489076193
GEGKTKPQLL	10	Unmodified	_GEGKTKPQLL_					0	0	0			REV__PRMT9|p.S287G|1|0.07|ENSG00000164169|chr4:147668633-147668633|T/C|missense_variant	REV__PRMT9|p.S287G|1|0.07|ENSG00000164169|chr4:147668633-147668633|T/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.81298828125	2	535.813856	1069.61316	-1.1125	-0.00059609	0.90544	0.00048515	-0.20706	-0.00011095	535.8143919709725	105	1.1557	102.89	102.59	103.75	-2.1117					46	22	3	0	0	0	0.53807	1	9528	9528		49.536	1.6204	1	247100	+		13372	29319	10940	10952	14652	14652					0.08113701023080466
GEGLNKTAI	9	Unmodified	_GEGLNKTAI_					0	0	0		ENST00000591574.5_1_17:76677122-76698292:-|nuORF;ENST00000462927.5_1_22:37678610-37705275:+|nuORF;nc|ENSG00000108669|Q15438-3|CYTH1;ENSG00000100055|ENST00000248901|CYTH4;nc|ENSG00000108669|Q15438-2|CYTH1;ENSG00000108669|ENST00000446868|CYTH1;ENSG00000105443|ENST00000452733|CYTH2;nc|ENSG00000105443|Q99418|CYTH2;ENST00000469886.5_1_22:37678610-37693724:+|nuORF	ENST00000591574.5_1_17:76677122-76698292:-|nuORF	ENST00000591574.5_1_17:76677122-76698292:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	451.7523498535156	2	451.750724	901.486896	0.7496	0.00033863	-0.93799	-0.00042374	-0.18839	-8.5105E-05	451.7501655185606	57.575	1.1156	54.23	53.883	54.999	-3.3449					32	21	2	0	0	0	0.38969	1	3749	3749		52.937	3.4952	1	211850			13373	2001	10941	10953	14653	14653					0.03221194517800541
GEGLNKTAI	9	Unmodified	_GEGLNKTAI_					0	0	0		ENST00000591574.5_1_17:76677122-76698292:-|nuORF;ENST00000462927.5_1_22:37678610-37705275:+|nuORF;nc|ENSG00000108669|Q15438-3|CYTH1;ENSG00000100055|ENST00000248901|CYTH4;nc|ENSG00000108669|Q15438-2|CYTH1;ENSG00000108669|ENST00000446868|CYTH1;ENSG00000105443|ENST00000452733|CYTH2;nc|ENSG00000105443|Q99418|CYTH2;ENST00000469886.5_1_22:37678610-37693724:+|nuORF	ENST00000591574.5_1_17:76677122-76698292:-|nuORF	ENST00000591574.5_1_17:76677122-76698292:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	451.750724	901.486896	1.4895	0.00067287	-1.5528	-0.00070149	-0.063357	-2.8622E-05	451.7498771574542	57.141	0.8922	54.349	54.03	54.922	-2.792	0.059735	-0.00037764	NaN	52.937	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37665			13374	2001	10941	10953							0.03221194517800541
GEGPDGDVKL	10	Unmodified	_GEGPDGDVKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa99_classI_Rep5	1	493.74737548828125	2	493.743096	985.47164	-0.049015	-2.4201E-05	-0.26056	-0.00012865	-0.30958	-0.00015285	493.74295453088035	64.899	0.79742	64.899	64.588	65.385	0					44	19	3	0	0	0	0.11632	1	5917	5917		109.48	37.601	1	4295900			13375	3687	10942	10954	14654	14654					-0.021677170700399984
GEGPDVHMTL	10	Unmodified	_GEGPDVHMTL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant;AHNAK|p.P895Cfs*7|1|0.12|ENSG00000124942|chr11:62531725-62531735|CCACTTCTGGG/-|frameshift_variant;AHNAK|p.P767Cfs*7|1|0.15|ENSG00000124942|chr11:62532109-62532119|CCACTTCTGGG/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa99_classI_Rep5	1	528.2456665039062	2	528.244949	1054.47534	1.9354	0.0010224	0.44097	0.00023294	2.3764	0.0012553	528.245035670968	85.661	0.84846	85.661	85.422	86.271	0					39	20	3	0	0	0	0.019828	1	9001	9001		148.04	68.33	1	2719100			13376	3687	10943	10955	14655	14655					-0.04971370567818667
GEGPEVDVKL	10	Unmodified	_GEGPEVDVKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa99_classI_Rep5	1	521.778076171875	2	521.774396	1041.53424	1.7872	0.00093254	0.32653	0.00017038	2.1138	0.0011029	521.7744349632284	86.07	1.0101	86.07	85.791	86.801	0					42	24	4	0	0	0	0.25842	1	9054	9054		85.862	13.984	1	3336400			13377	3687	10944	10956	14656	14656					0.015134289981460824
GEGPFIKQL	9	Unmodified	_GEGPFIKQL_					0	0	0		tr|A0A553SU96|A0A553SU96_NIACIDUF1232domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06605PE=4SV=1	tr|A0A553SU96|A0A553SU96_NIACIDUF1232domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06605PE=4SV=1	tr|A0A553SU96|A0A553SU96_NIACIDUF1232domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06605PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.79449462890625	2	494.776742	987.538931	0.30315	0.00014999	-0.4358	-0.00021562	-0.13264	-6.5629E-05	494.77638194300135	98.275	0.60217	95.896	95.521	96.124	-2.3786					17	11	2	0	0	0	0.027343	1	8686	8686		79.451	7.5735	1	32789			13378	34587	10945	10957	14657	14657					0.0446635793156247
GEGPLDVRL	9	Unmodified	_GEGPLDVRL_					0	0	0		ENST00000496479.5_1_3:37095344-37107514:-|nuORF;nc|ENSG00000093167|Q9Y608-2|LRRFIP2;nc|ENSG00000093167|Q9Y608-4|LRRFIP2;nc|ENSG00000093167|Q9Y608-5|LRRFIP2;ENSG00000093167|ENST00000336686|LRRFIP2	ENST00000496479.5_1_3:37095344-37107514:-|nuORF	ENST00000496479.5_1_3:37095344-37107514:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	478.2655029296875	2	478.263999	954.513445	2.0035	0.00095819	0.17374	8.3095E-05	2.1772	0.0010413	478.26397014818104	96.818	0.97971	96.818	96.543	97.522	0					52	22	4	0	0	0	0.094791	2	10637	10609;10637		98.582	21.808	1	7556500			13379	1909	10946	10958	14658;14659	14659					0.03436883409131042
GEGPLDVRL	9	Unmodified	_GEGPLDVRL_					0	0	0		ENST00000496479.5_1_3:37095344-37107514:-|nuORF;nc|ENSG00000093167|Q9Y608-2|LRRFIP2;nc|ENSG00000093167|Q9Y608-4|LRRFIP2;nc|ENSG00000093167|Q9Y608-5|LRRFIP2;ENSG00000093167|ENST00000336686|LRRFIP2	ENST00000496479.5_1_3:37095344-37107514:-|nuORF	ENST00000496479.5_1_3:37095344-37107514:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	478.263999	954.513445	-0.37707	-0.00018034	0.36963	0.00017678	-0.0074354	-3.5561E-06	478.2640553841675	97.924	0.98064	97.009	96.705	97.685	-0.91505	0.092462	0.00034431	NaN	98.582	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106390			13380	1909	10946	10958							0.03436883409131042
GEGPLDVRL	9	Unmodified	_GEGPLDVRL_					0	0	0		ENST00000496479.5_1_3:37095344-37107514:-|nuORF;nc|ENSG00000093167|Q9Y608-2|LRRFIP2;nc|ENSG00000093167|Q9Y608-4|LRRFIP2;nc|ENSG00000093167|Q9Y608-5|LRRFIP2;ENSG00000093167|ENST00000336686|LRRFIP2	ENST00000496479.5_1_3:37095344-37107514:-|nuORF	ENST00000496479.5_1_3:37095344-37107514:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	478.263999	954.513445	0.32346	0.0001547	-0.22942	-0.00010972	0.094038	4.4975E-05	478.26371490246703	98.649	0.72683	96.964	96.646	97.373	-1.685	0.047521	-0.0002287	NaN	98.582	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147130			13381	1909	10946	10958							0.03436883409131042
GEGPLDVRL	9	Unmodified	_GEGPLDVRL_					0	0	0		ENST00000496479.5_1_3:37095344-37107514:-|nuORF;nc|ENSG00000093167|Q9Y608-2|LRRFIP2;nc|ENSG00000093167|Q9Y608-4|LRRFIP2;nc|ENSG00000093167|Q9Y608-5|LRRFIP2;ENSG00000093167|ENST00000336686|LRRFIP2	ENST00000496479.5_1_3:37095344-37107514:-|nuORF	ENST00000496479.5_1_3:37095344-37107514:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	478.263999	954.513445	-0.29697	-0.00014203	-0.3159	-0.00015108	-0.61287	-0.00029311	478.26364751457913	99.201	0.93034	96.875	96.588	97.518	-2.3253	-0.041457	-0.00031142	NaN	98.582	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140080			13382	1909	10946	10958							0.03436883409131042
GEGPLNEFAFS	11	Unmodified	_GEGPLNEFAFS_					0	0	0		ENSG00000185800|ENST00000270223|DMWD	ENSG00000185800|ENST00000270223|DMWD	ENSG00000185800|ENST00000270223|DMWD	MULTI-SECPEP	OvCa9_classI_Rep3	3	584.8346557617188	2	584.269478	1166.5244	-0.4692	-0.00027414	-2.9238	-0.0017083	-3.393	-0.0019824	584.2679529363389	110.91	0.50648	109.8	109.55	110.05	-1.1038					14	9	2	0	0	0	0.02557	1	8002	8002		18.262	2.6203	1	8263.3			13383	8285	10947	10959	14660	14660					-0.052197590072410094
GEGQLKLNLPE	11	Unmodified	_GEGQLKLNLPE_					0	0	0			REV__ENSG00000182983|ENST00000440367|ZNF662	REV__ENSG00000182983|ENST00000440367|ZNF662	MULTI-MSMS	OvCa99_classI_Rep5	1	599.3267211914062	2	599.327328	1196.6401	1.4955	0.00089631	-4.0303	-0.0024155	-2.5348	-0.0015192	599.3248701876985	91.077	1.2217	91.077	90.615	91.837	0					77	29	4	0	0	0	0.56391	1	9791	9791		47.96	3.5823	1	1662000	+		13384	22332	10948	10960	14661	14661					0.04964764843612102
GEGRVGIIL	9	Unmodified	_GEGRVGIIL_					0	0	0		NAP1L4-CFTR|1|fusion;nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR	NAP1L4-CFTR|1|fusion	NAP1L4-CFTR|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.275146484375	2	457.276909	912.539266	2.4689	0.001129	-0.37361	-0.00017084	2.0953	0.00095811	457.2765806051405	88.921	0.5162	88.921	88.677	89.193	0					21	12	2	0	0	0	0.027446	1	9469	9469		51.193	8.7966	1	836180			13385	14854	10949	10961	14662	14662					0.07949777651447221
GEGSVRLHS	9	Unmodified	_GEGSVRLHS_					0	0	0		ENST00000354323.2_1_9:35906929-35907127:+|nuORF	ENST00000354323.2_1_9:35906929-35907127:+|nuORF	ENST00000354323.2_1_9:35906929-35907127:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.7721252441406	2	471.243598	940.472643	1.0039	0.00047307	-2.8944	-0.001364	-1.8905	-0.0008909	471.241278644772	64.835	0.48579	61.35	61.018	61.504	-3.4854					16	9	3	0	0	0	0.027448	1	4647	4647		27.882	1.1893	1	69119			13386	10660	10950	10962	14663	14663					2.5420895212846517E-05
GEGSVSHSVL	10	Unmodified	_GEGSVSHSVL_					0	0	0		ENST00000378611.8_1_16:81087625-81095024:-|nuORF	ENST00000378611.8_1_16:81087625-81095024:-|nuORF	ENST00000378611.8_1_16:81087625-81095024:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.2889709472656	2	486.243264	970.471974	0.025946	1.2616E-05	0.71536	0.00034784	0.74131	0.00036046	486.2434243263627	95.695	0.79336	94.667	94.12	94.913	-1.0281					22	15	2	0	0	0	0.027213	1	8585	8585		56.721	0.28726	1	18152			13387	11109	10951	10963	14664	14664					-0.01444297350190027
GEGWEKLSL	9	Unmodified	_GEGWEKLSL_					0	0	0		nc|ENSG00000160688|Q8NFF5-4|FLAD1;nc|ENSG00000160688|Q8NFF5-5|FLAD1;nc|ENSG00000160688|Q8NFF5-3|FLAD1;nc|ENSG00000160688|Q8NFF5-2|FLAD1;ENSG00000160688|ENST00000292180|FLAD1	nc|ENSG00000160688|Q8NFF5-4|FLAD1	nc|ENSG00000160688|Q8NFF5-4|FLAD1	MULTI-SECPEP	OvCa9_classI_Rep3	3	510.2987060546875	2	509.763832	1017.51311	-0.35436	-0.00018064	0.87911	0.00044814	0.52475	0.0002675	509.7646004684938	99.084	0.40891	97.399	97.165	97.574	-1.685					9	7	2	0	0	0	0.027462	1	6626	6626		27.882	1.1893	1	14324			13388	6081	10952	10964	14665	14665					0.0050546368928507945
GEGWEKLSL	9	Unmodified	_GEGWEKLSL_					0	0	0		nc|ENSG00000160688|Q8NFF5-4|FLAD1;nc|ENSG00000160688|Q8NFF5-5|FLAD1;nc|ENSG00000160688|Q8NFF5-3|FLAD1;nc|ENSG00000160688|Q8NFF5-2|FLAD1;ENSG00000160688|ENST00000292180|FLAD1	nc|ENSG00000160688|Q8NFF5-4|FLAD1	nc|ENSG00000160688|Q8NFF5-4|FLAD1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	509.763832	1017.51311	2.8667	0.0014613	3.5653	0.0018174	6.432	0.0032788	509.765532026269	97.286	0.55812	97.286	97.008	97.566	0	-0.056342	0.00027576	NaN	42.396	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	732780			13389	6081	10952	10964							0.0050546368928507945
GEHAGRIYL	9	Unmodified	_GEHAGRIYL_					0	0	0		ENSG00000179151|ENST00000315127|EDC3	ENSG00000179151|ENST00000315127|EDC3	ENSG00000179151|ENST00000315127|EDC3	MULTI-MSMS	OvCa99_classI_Rep5	1	508.271240234375	2	508.269616	1014.52468	-0.56132	-0.0002853	1.8703	0.00095059	1.3089	0.00066529	508.2696079682236	53.291	0.65209	53.291	52.956	53.609	0					44	14	5	0	0	0	0.26076	1	4223	4223		67.494	22.963	1	1640100			13390	7806	10953	10965	14666	14666					0.0179970550325379
GEHEIDYILL	10	Unmodified	_GEHEIDYILL_					0	0	0		nc|ENSG00000067064|Q13907|IDI1;ENSG00000067064|ENST00000381344|IDI1	nc|ENSG00000067064|Q13907|IDI1	nc|ENSG00000067064|Q13907|IDI1	MULTI-MSMS	OvCa9_classI_Rep3	3	601.3086547851562	2	601.308603	1200.60265	3.2383	0.0019472	-3.0988	-0.0018633	0.13954	8.3905E-05	601.30656603052	121.18	1.2559	120.15	119.86	121.11	-1.0271					47	23	5	0	0	0	0.44431	1	9266	9266		62.107	8.756	1	243140			13391	1364	10954	10966	14667	14667					0.010376735780027957
GEHGKEILL	9	Unmodified	_GEHGKEILL_					0	0	0		AKAP9-CDK14|2|fusion;AKAP9-CDK14|1|fusion;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF	AKAP9-CDK14|2|fusion	AKAP9-CDK14|2|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	498.28375244140625	2	498.279649	994.544745	-0.52416	-0.00026118	0.10457	5.2103E-05	-0.4196	-0.00020908	498.2795877228996	55.702	0.6549	55.702	55.48	56.135	0					33	15	3	0	0	0	0.26076	1	4574	4574		67.494	1.6905	1	1621300			13392	58	10955	10967	14668	14668					0.04725456443236453
GEHGLIIRV	9	Unmodified	_GEHGLIIRV_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	OvCa99_classI_Rep5	1	497.298828125	2	497.295633	992.576714	-0.20094	-9.9925E-05	-0.53731	-0.0002672	-0.73824	-0.00036713	497.2953496050976	72.998	1.4906	72.998	72.723	74.214	0					105	37	5	0	0	0	0.35444	2	7126	7126;7156		56.721	19.693	1	20639000			13393	1595	10956	10968	14669;14670	14669					0.0801286891704649
GEHGLIIRV	9	Unmodified	_GEHGLIIRV_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	OvCa9_classI_Rep2	2	497.29559326171875	2	497.295633	992.576714	-0.63886	-0.0003177	0.081934	4.0745E-05	-0.55692	-0.00027695	497.29556624795856	76.294	1.7763	74.44	74.044	75.82	-1.854					92	33	4	0	0	0	0.27001	1	6311	6311		66.429	6.0256	1	888620			13394	1595	10956	10968	14671	14671					0.0801286891704649
GEHGLIIRV	9	Unmodified	_GEHGLIIRV_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	OvCa9_classI_Rep3	3	497.2961120605469	2	497.295633	992.576714	-0.97022	-0.00048249	0.54715	0.0002721	-0.42307	-0.00021039	497.2958463608088	76.536	2.2633	74.164	73.518	75.781	-2.3715					118	43	4	0	0	0	0.27001	4	3942	3938;3942;3961;3968		66.429	17.218	1	1130600			13395	1595	10956	10968	14672;14673;14674;14675	14673					0.0801286891704649
GEHIIAGAGEL	11	Unmodified	_GEHIIAGAGEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OvCa99_classI_Rep5	1	533.781494140625	2	533.780013	1065.54547	2.3919	0.0012768	-0.50273	-0.00026835	1.8892	0.0010084	533.7795802925358	80.203	0.67199	80.203	79.987	80.659	0					34	15	3	0	0	0	0.26821	2	8210	8210;8239		70.816	24.844	1	2243800			13396	6826	10957	10969	14676;14677	14676					0.015322510922715082
GEHIIAGAGEL	11	Unmodified	_GEHIIAGAGEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	533.780013	1065.54547	-0.52857	-0.00028214	0.66026	0.00035243	0.13168	7.029E-05	533.7801944049883	82.113	1.1456	80.464	80.023	81.169	-1.6485	0.12815	0.00026373	NaN	70.816	57	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113020			13397	6826	10957	10969							0.015322510922715082
GEHIIAGAGEL	11	Unmodified	_GEHIIAGAGEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	533.780013	1065.54547	-1.2324	-0.00065785	1.0823	0.0005777	-0.15016	-8.0153E-05	533.7803846158023	83.024	1.0704	80.341	80.028	81.098	-2.683	0.0050305	0.00071427	NaN	70.816	49	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	266140			13398	6826	10957	10969							0.015322510922715082
GEHLKTDLL	9	Unmodified	_GEHLKTDLL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.A1773Sfs*19|1|0.04|ENSG00000100345|chr22:36285287-36285288|-/T|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OvCa99_classI_Rep5	1	513.287353515625	2	513.284931	1024.55531	-1.0014	-0.000514	-0.14237	-7.3077E-05	-1.1438	-0.00058707	513.284871977826	65.644	1.5103	65.644	65.347	66.857	0					58	37	2	0	0	0	0.084918	2	6019	6019;6046		101.25	19.012	1	25371000			13399	2050	10958	10970	14678;14679	14678					0.04401439097682669
GEHTLLVTV	9	Unmodified	_GEHTLLVTV_					0	0	0		ENST00000441173.1_1_7:99751392-99751584:+|nuORF;ENSG00000188186|ENST00000341942|LAMTOR4	ENST00000441173.1_1_7:99751392-99751584:+|nuORF	ENST00000441173.1_1_7:99751392-99751584:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	484.7735290527344	2	484.7742	967.533846	1.046	0.00050707	-1.5483	-0.00075059	-0.50234	-0.00024352	484.77344610274326	91.377	2.4981	90.141	89.488	91.987	-1.2355					132	47	4	0	0	0	0.071436	8	8091	8091;8097;8109;8115;8127;8139;8147;8160		106.42	21.056	1	3844000			13400	8456	10959	10971	14680;14681;14682;14683;14684;14685;14686;14687	14680					0.04878054068956317
GEHTLLVTV	9	Unmodified	_GEHTLLVTV_					0	0	0		ENST00000441173.1_1_7:99751392-99751584:+|nuORF;ENSG00000188186|ENST00000341942|LAMTOR4	ENST00000441173.1_1_7:99751392-99751584:+|nuORF	ENST00000441173.1_1_7:99751392-99751584:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	484.775634765625	2	484.7742	967.533846	-1.5084	-0.00073122	-0.15829	-7.6735E-05	-1.6667	-0.00080796	484.77403906510136	92.046	3.4526	90.022	89.433	92.885	-2.0241					159	69	4	0	0	0	0.037627	10	5800	5800;5806;5812;5818;5824;5830;5843;5850;5855;5861		128.86	43.502	1	6192900			13401	8456	10959	10971	14688;14689;14690;14691;14692;14693;14694;14695;14696;14697	14688					0.04878054068956317
GEHTLLVTV	9	Unmodified	_GEHTLLVTV_					0	0	0		ENST00000441173.1_1_7:99751392-99751584:+|nuORF;ENSG00000188186|ENST00000341942|LAMTOR4	ENST00000441173.1_1_7:99751392-99751584:+|nuORF	ENST00000441173.1_1_7:99751392-99751584:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.77557373046875	2	484.7742	967.533846	-0.90859	-0.00044046	0.24853	0.00012048	-0.66007	-0.00031998	484.77432100940536	92.678	2.6189	90.17	89.602	92.221	-2.5072					128	53	4	0	0	0	0.037627	4	8070	8036;8058;8070;8133		128.86	40.218	1	5506400			13402	8456	10959	10971	14698;14699;14700;14701	14700					0.04878054068956317
GEHVKAIEI	9	Unmodified	_GEHVKAIEI_					0	0	0		nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	MULTI-MSMS	OvCa99_classI_Rep5	1	498.2814636230469	2	498.279649	994.544745	0.060963	3.0377E-05	-0.085811	-4.2758E-05	-0.024848	-1.2381E-05	498.27947561098983	58.174	0.95321	58.174	57.859	58.812	0					51	22	4	0	0	0	0.094791	1	4927	4927		98.582	13.421	1	4018400			13403	6377	10960	10972	14702	14702					0.04725456443236453
GEHVKAIEI	9	Unmodified	_GEHVKAIEI_					0	0	0		nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	MULTI-MATCH	OvCa9_classI_Rep2	2		2	498.279649	994.544745	-1.2229	-0.00060932	0.38031	0.0001895	-0.84254	-0.00041982	498.27979697672566	61.008	1.0524	58.238	57.871	58.924	-2.7702	-0.032194	0.00047684	NaN	98.582	36	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47629			13404	6377	10960	10972							0.04725456443236453
GEHVKAIEI	9	Unmodified	_GEHVKAIEI_					0	0	0		nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	498.279649	994.544745	-0.15457	-7.7018E-05	-0.77528	-0.0003863	-0.92985	-0.00046332	498.2790980047356	61.856	1.0041	58.399	58.057	59.061	-3.4577	0.12823	-0.00067477	NaN	98.582	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71676			13405	6377	10960	10972							0.04725456443236453
GEIASFDKAKL	11	Unmodified	_GEIASFDKAKL_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	OvCa99_classI_Rep5	1	589.8261108398438	2	589.824421	1177.63429	0.29171	0.00017206	-0.15086	-8.8981E-05	0.14085	8.3075E-05	589.8242286444441	73.81	0.72543	73.81	73.56	74.286	0					51	18	5	0	0	0	0.05559	1	7261	7261		112.3	24.599	1	7745500		+	13406	1078	10961	10973	14703	14703					0.05257666331931432
GEIASFDKAKL	11	Unmodified	_GEIASFDKAKL_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	OvCa9_classI_Rep2	2	589.82421875	2	589.824421	1177.63429	-0.96458	-0.00056893	0.2661	0.00015695	-0.69848	-0.00041198	589.8245399534152	75.819	1.922	73.965	73.481	75.403	-1.854					99	36	5	0	0	0	0.05559	5	6265	6253;6259;6265;6271;6277		133.99	48.132	1	1158200		+	13407	1078	10961	10973	14704;14705;14706;14707;14708	14706					0.05257666331931432
GEIASFDKAKL	11	Unmodified	_GEIASFDKAKL_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	OvCa9_classI_Rep3	3	589.8253784179688	2	589.824421	1177.63429	-1.7475	-0.0010307	1.135	0.00066945	-0.6125	-0.00036127	589.8250661053958	76.067	1.817	73.695	73.367	75.184	-2.3715					104	34	4	0	0	0	0.043701	3	3902	3890;3896;3902		122.94	46.108	1	1708300		+	13408	1078	10961	10973	14709;14710;14711	14711					0.05257666331931432
GEIASFDKAKL	11	Unmodified	_GEIASFDKAKL_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.8248291015625	2	589.824421	1177.63429	-0.41967	-0.00024753	-0.30536	-0.00018011	-0.72502	-0.00042764	589.8242607771954	76.795	1.6406	73.856	73.598	75.238	-2.9389					107	33	6	0	0	0	0.06371	4	6118	6107;6118;6130;6143		131.12	60.3	1	1545200		+	13409	1078	10961	10973	14712;14713;14714;14715	14713					0.05257666331931432
GEIATSQERL	10	Unmodified	_GEIATSQERL_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	OvCa99_classI_Rep5	1	552.2899169921875	2	552.288202	1102.56185	0.1516	8.3725E-05	-0.28992	-0.00016012	-0.13833	-7.6397E-05	552.287907245323	58.048	0.58803	58.048	57.775	58.363	0					29	13	3	0	0	0	0.29438	1	4908	4908		81.525	4.6784	1	1363800			13410	3631	10962	10974	14716	14716					0.01467332258357601
GEIATSQERL	10	Unmodified	_GEIATSQERL_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	552.288202	1102.56185	-0.2952	-0.00016303	0.30861	0.00017044	0.013415	7.4091E-06	552.2884581754226	60.809	0.68538	58.039	57.819	58.504	-2.7702	-0.0050589	0.00055455	NaN	81.525	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12727			13411	3631	10962	10974							0.01467332258357601
GEIATSQERL	10	Unmodified	_GEIATSQERL_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	552.288202	1102.56185	0.16021	8.8481E-05	-0.11827	-6.5321E-05	0.041934	2.316E-05	552.2881031911825	61.502	1.05	58.044	57.617	58.667	-3.4577	0.00060133	8.3023E-05	NaN	81.525	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34297			13412	3631	10962	10974							0.01467332258357601
GEIDAHEDSF	10	Unmodified	_GEIDAHEDSF_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;SPTAN1|p.Q1734Rfs*19|1|0.63|ENSG00000197694|chr9:128615697-128615725|CCAAGTAAAGGACAAGAGGGACACCATCA/-|frameshift_variant;SPTAN1|p.M1752Ifs*16|1|0.07|ENSG00000197694|chr9:128615752-128615753|-/TTCCTGAGTTCTTATG|frameshift_variant;SPTAN1|p.C956Afs*33|1|0.61|ENSG00000197694|chr9:128587691-128587691|C/-|frameshift_variant	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	OvCa99_classI_Rep5	1	560.2349853515625	2	560.233093	1118.45163	0.30848	0.00017282	0.49386	0.00027668	0.80234	0.0004495	560.2333978997705	67.578	1.027	67.578	67.371	68.398	0					54	25	4	0	0	0	0.28845	1	6336	6336		82.241	29.152	1	3863700			13413	8736	10963	10975	14717	14717					-0.10285512800669494
GEIDGNKVTL	10	Unmodified	_GEIDGNKVTL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	OvCa99_classI_Rep5	1	523.281494140625	2	523.279846	1044.54514	-0.48449	-0.00025352	0.53227	0.00027852	0.047778	2.5001E-05	523.2801587792262	73.496	1.3298	73.496	72.994	74.324	0					121	33	6	0	0	0	0.0061832	2	7222	7222;7252		164.46	52.044	1	117510000			13414	3058	10964	10976	14718;14719	14718					0.02464831372435583
GEIDGNKVTL	10	Unmodified	_GEIDGNKVTL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	OvCa9_classI_Rep2	2	523.2796630859375	2	523.279846	1044.54514	-0.34081	-0.00017834	-0.68044	-0.00035606	-1.0212	-0.0005344	523.2796362857813	75.589	2.6974	73.735	72.913	75.61	-1.854					146	51	4	0	0	0	0.0005804	14	6239	6191;6196;6202;6207;6214;6220;6226;6232;6239;6245;6251;6258;6264;6276		181.41	65.656	1	3667000			13415	3058	10964	10976	14720;14721;14722;14723;14724;14725;14726;14727;14728;14729;14730;14731;14732;14733	14728					0.02464831372435583
GEIDGNKVTL	10	Unmodified	_GEIDGNKVTL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.2806396484375	2	523.279846	1044.54514	-0.6886	-0.00036033	-0.68519	-0.00035855	-1.3738	-0.00071888	523.2796687506648	76.424	2.9706	73.485	72.741	75.711	-2.9389					194	61	7	0	0	0	4.6181E-07	12	6104	6045;6056;6067;6079;6092;6104;6117;6129;6141;6153;6166;6191		204.42	75.128	1	14882000			13416	3058	10964	10976	14734;14735;14736;14737;14738;14739;14740;14741;14742;14743;14744;14745	14739					0.02464831372435583
GEIDHVHIL	9	Unmodified	_GEIDHVHIL_					0	0	0		ENSG00000183826|ENST00000481247|BTBD9	ENSG00000183826|ENST00000481247|BTBD9	ENSG00000183826|ENST00000481247|BTBD9	MULTI-MSMS	OvCa99_classI_Rep5	1	516.7785034179688	2	516.777274	1031.53999	1.469	0.00075914	0.85533	0.00044201	2.3243	0.0012012	516.777833330901	78.797	0.66264	78.797	78.374	79.037	0					39	15	3	0	0	0	0.21395	1	7996	7996		73.975	8.1716	1	3684700			13417	8112	10965	10977	14746	14746					0.02548572300474916
GEIDYEAIVKL	11	Unmodified	_GEIDYEAIVKL_					0	0	0		ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	MULTI-MSMS	OvCa99_classI_Rep5	1	625.3374633789062	2	625.337361	1248.66017	1.3781	0.00086175	0.026182	1.6373E-05	1.4042	0.00087813	625.3369407958311	123.1	0.7008	123.1	122.81	123.51	0					44	14	4	0	0	0	0.17265	1	14201	14201		83.647	18.182	1	852170			13418	2080	10966	10978	14747	14747					0.045785157835553036
GEIDYEAIVKL	11	Unmodified	_GEIDYEAIVKL_					0	0	0		ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	MULTI-MSMS	OvCa9_classI_Rep4_	4	625.3366088867188	2	625.337361	1248.66017	0.40313	0.00025209	-0.45712	-0.00028585	-0.053989	-3.3762E-05	625.3369355775503	122.7	0.94242	121.34	121.16	122.1	-1.3666					39	18	3	0	0	0	0.39237	2	11608	11596;11608		61.691	12.273	1	85114			13419	2080	10966	10978	14748;14749	14749					0.045785157835553036
GEIDYEAIVKL	11	Unmodified	_GEIDYEAIVKL_					0	0	0		ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	625.337361	1248.66017	-1.2338	-0.00077156	1.2398	0.00077528	0.0059487	3.72E-06	625.3379403597792	121.83	0.74269	121.63	121.4	122.14	-0.19719	0.16879	0.0022496	NaN	61.691	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58880			13420	2080	10966	10978							0.045785157835553036
GEIDYEAIVKL	11	Unmodified	_GEIDYEAIVKL_					0	0	0		ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	625.337361	1248.66017	2.0619	0.0012894	-2.0047	-0.0012536	0.057241	3.5795E-05	625.3360065327087	122.45	0.73491	121.43	121.16	121.9	-1.0286	-0.040181	-0.0018082	NaN	61.691	34	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93349			13421	2080	10966	10978							0.045785157835553036
GEIGTKTTL	9	Unmodified	_GEIGTKTTL_					0	0	0		ENSG00000175792|ENST00000322623|RUVBL1;chr3:128081239-128082483|108|16.97|0.0|12.62|-|1|None,RUVBL1|1	ENSG00000175792|ENST00000322623|RUVBL1	ENSG00000175792|ENST00000322623|RUVBL1	MULTI-MSMS	OvCa99_classI_Rep5	1	460.2596740722656	2	460.258382	918.502212	-0.16495	-7.5921E-05	0.29865	0.00013745	0.13369	6.1534E-05	460.25838201269835	56.438	0.78165	56.438	56.094	56.875	0					53	18	5	0	0	0	0.12515	2	4664	4664;4692		90.37	10.431	1	4195500			13422	7564	10967	10979	14750;14751	14750					0.03970061314987561
GEIGTKTTL	9	Unmodified	_GEIGTKTTL_					0	0	0		ENSG00000175792|ENST00000322623|RUVBL1;chr3:128081239-128082483|108|16.97|0.0|12.62|-|1|None,RUVBL1|1	ENSG00000175792|ENST00000322623|RUVBL1	ENSG00000175792|ENST00000322623|RUVBL1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	460.258382	918.502212	-0.01439	-6.6233E-06	0.23679	0.00010898	0.2224	0.00010236	460.2584028532527	60.204	0.94136	56.774	56.553	57.494	-3.43	0.16817	-3.7978E-05	NaN	90.37	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	301700			13423	7564	10967	10979							0.03970061314987561
GEIIGVKVL	9	Unmodified	_GEIIGVKVL_					0	0	0		ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	MULTI-MSMS	OvCa99_classI_Rep5	1	464.29779052734375	2	464.29731	926.580068	2.493	0.0011575	1.166	0.00054137	3.659	0.0016989	464.2980388785935	102.26	0.89548	102.26	102	102.89	0					37	20	3	0	0	0	0.074342	1	11384	11384		104.75	11.551	1	931140			13424	7889	10968	10980	14752	14752					0.1138411897103424
GEIIGVKVL	9	Unmodified	_GEIIGVKVL_					0	0	0		ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	MULTI-MSMS	OvCa9_classI_Rep2	2	464.2975769042969	2	464.29731	926.580068	-1.0473	-0.00048624	0.92276	0.00042844	-0.12449	-5.7801E-05	464.29762801591284	102.69	1.6773	102.01	101.59	103.27	-0.68459					77	33	4	0	0	0	0.11471	2	9455	9455;9461		93.195	16.421	1	474550			13425	7889	10968	10980	14753;14754	14753					0.1138411897103424
GEIIGVKVL	9	Unmodified	_GEIIGVKVL_					0	0	0		ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	MULTI-MSMS	OvCa9_classI_Rep3	3	464.2981872558594	2	464.29731	926.580068	-0.013462	-6.2502E-06	-0.25788	-0.00011973	-0.27135	-0.00012598	464.2970753146462	103.48	1.6208	102.05	101.66	103.28	-1.4347					80	30	4	0	0	0	0.16562	1	7166	7166		82.241	8.2658	1	599630			13426	7889	10968	10980	14755	14755					0.1138411897103424
GEIIGVKVL	9	Unmodified	_GEIIGVKVL_					0	0	0		ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	464.296630859375	2	464.29731	926.580068	-0.742	-0.00034451	0.65219	0.00030281	-0.089806	-4.1697E-05	464.2975368438546	104.12	2.0006	102	101.64	103.64	-2.1192					84	38	3	0	0	0	0.16562	3	9424	9412;9424;9437		82.241	10.945	1	575530			13427	7889	10968	10980	14756;14757;14758	14757					0.1138411897103424
GEIIMGNIEL	10	Unmodified	_GEIIMGNIEL_					0	0	0		ENST00000463199.1_1_Y:15025644-15026909:+|nuORF;ENST00000472510.5_1_Y:15024878-15026576:+|nuORF;nc|ENSG00000067048|O15523-3|DDX3Y;ENST00000542215.5_1_X:41193845-41203505:+|nuORF;nc|ENSG00000215301|O00571-2|DDX3X;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X	ENST00000463199.1_1_Y:15025644-15026909:+|nuORF	ENST00000463199.1_1_Y:15025644-15026909:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	544.7882690429688	2	544.78645	1087.55835	0.6944	0.0003783	1.6405	0.00089371	2.3349	0.001272	544.7872933443617	140.24	1.2119	140.24	139.97	141.18	0					48	24	3	0	0	0	0.072307	1	16387	16387		120.87	10.749	1	989240			13428	1363	10969	10981	14759	14759					0.018069461601498915
GEIINTHTLL	10	Unmodified	_GEIINTHTLL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	555.8109130859375	2	555.811313	1109.60807	2.744	0.0015251	-0.10923	-6.0709E-05	2.6347	0.0014644	555.8111750438399	98.919	0.55241	98.919	98.683	99.236	0					33	13	4	0	0	0	0.27679	1	10904	10904		83.647	12.831	1	2740800			13429	4862	10970	10982	14760	14760					0.057653971604850085
GEIINTHTLL	10	Unmodified	_GEIINTHTLL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	OvCa9_classI_Rep2	2	555.8088989257812	2	555.811313	1109.60807	-0.097889	-5.4408E-05	-0.23586	-0.0001311	-0.33375	-0.0001855	555.8110034212627	99.437	0.94353	98.606	98.219	99.162	-0.83051					48	18	4	0	0	0	0.03438	2	9071	9066;9071		134.77	38.95	1	255990			13430	4862	10970	10982	14761;14762	14762					0.057653971604850085
GEIINTHTLL	10	Unmodified	_GEIINTHTLL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.812255859375	2	555.811313	1109.60807	-0.44059	-0.00024489	-1.1395	-0.00063337	-1.5801	-0.00087826	555.8108461823545	100.79	1.3704	98.524	98.187	99.557	-2.2665					48	27	2	0	0	0	0.05764	1	9029	9029		126.24	22.186	1	284270			13431	4862	10970	10982	14763	14763					0.057653971604850085
GEIINTHTLL	10	Unmodified	_GEIINTHTLL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	555.811313	1109.60807	-1.0898	-0.00060571	-0.88695	-0.00049297	-1.9767	-0.0010987	555.8108253417707	100.29	1.1276	98.683	98.423	99.551	-1.6053	-0.00023136	-0.00052839	NaN	134.77	38	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	264290			13432	4862	10970	10982							0.057653971604850085
GEIKEETTSHL	11	Unmodified	_GEIKEETTSHL_					0	0	0		nc|ENSG00000113889|P01042-3|KNG1;nc|ENSG00000113889|P01042-2|KNG1	nc|ENSG00000113889|P01042-3|KNG1	nc|ENSG00000113889|P01042-3|KNG1	MULTI-MSMS	OvCa99_classI_Rep5	1	622.3119506835938	2	622.311874	1242.6092	-0.64421	-0.0004009	0.44122	0.00027458	-0.20298	-0.00012632	622.3120286123457	47.919	0.7835	47.919	47.465	48.248	0					40	13	4	0	0	0	0.068205	1	3481	3481		104.42	27.649	1	2170900			13433	14969	10971	10983	14764	14764					-0.0024043326127412
GEIKGFTGI	9	Unmodified	_GEIKGFTGI_					0	0	0		nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2;PAPSS2|p.N416Qfs*36|1|0.06|ENSG00000198682|chr10:87743409-87743410|-/T|frameshift_variant;ENSG00000138801|ENST00000265174|PAPSS1	nc|ENSG00000198682|O95340|PAPSS2;ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	461.25714111328125	2	461.255643	920.496732	-2.4287	-0.0011203	1.9964	0.00092084	-0.43236	-0.00019943	461.25638241739665	88.472	0.90478	85.87	85.578	86.483	-2.6027					47	17	4	0	0	0	0.26076	1	7564	7564		67.494	12.717	1	231170			13434	4734;15259	10972	10984	14765	14765					0.033303825231769224
GEIKGFTGI	9	Unmodified	_GEIKGFTGI_					0	0	0		nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2;PAPSS2|p.N416Qfs*36|1|0.06|ENSG00000198682|chr10:87743409-87743410|-/T|frameshift_variant;ENSG00000138801|ENST00000265174|PAPSS1	nc|ENSG00000198682|O95340|PAPSS2;ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	461.255643	920.496732	2.0644	0.00095222	0.28002	0.00012916	2.3444	0.0010814	461.25564421381443	85.635	0.40794	85.635	85.422	85.83	0	-0.1673	-6.6894E-05	NaN	67.494	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	473900			13435	4734;15259	10972	10984							0.033303825231769224
GEIKGFTGI	9	Unmodified	_GEIKGFTGI_					0	0	0		nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2;PAPSS2|p.N416Qfs*36|1|0.06|ENSG00000198682|chr10:87743409-87743410|-/T|frameshift_variant;ENSG00000138801|ENST00000265174|PAPSS1	nc|ENSG00000198682|O95340|PAPSS2;ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	461.255643	920.496732	1.0473	0.00048309	-1.1435	-0.00052746	-0.096192	-4.4369E-05	461.2548672342585	87.32	0.9371	85.889	85.543	86.48	-1.4311	0.087388	-0.0013801	NaN	67.494	51	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121280			13436	4734;15259	10972	10984							0.033303825231769224
GEIKGFTGI	9	Unmodified	_GEIKGFTGI_					0	0	0		nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2;PAPSS2|p.N416Qfs*36|1|0.06|ENSG00000198682|chr10:87743409-87743410|-/T|frameshift_variant;ENSG00000138801|ENST00000265174|PAPSS1	nc|ENSG00000198682|O95340|PAPSS2;ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	461.255643	920.496732	-0.64643	-0.00029817	0.76847	0.00035446	0.12204	5.629E-05	461.2557621442585	87.952	1.0196	85.814	85.435	86.454	-2.1379	0.012108	0.00038371	NaN	67.494	50	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182550			13437	4734;15259	10972	10984							0.033303825231769224
GEIKHVSSL	9	Unmodified	_GEIKHVSSL_					0	0	0		nc|ENSG00000128487|Q5M775-5|SPECC1;nc|ENSG00000128487|Q5M775-3|SPECC1;nc|ENSG00000128487|Q5M775-2|SPECC1;nc|ENSG00000128487|Q5M775-4|SPECC1;ENSG00000128487|ENST00000395527|SPECC1	nc|ENSG00000128487|Q5M775-5|SPECC1	nc|ENSG00000128487|Q5M775-5|SPECC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.2840576171875	2	485.271824	968.529095	-0.56077	-0.00027213	0.49276	0.00023912	-0.068014	-3.3005E-05	485.2718536800108	43.371	0.93804	43.371	43.1	44.038	0					41	21	4	0	0	0	0.027462	1	2868	2868		42.864	14.982	1	1056100			13438	3881	10973	10985	14766	14766					0.04357169926197457
GEIKNIHLNL	10	Unmodified	_GEIKNIHLNL_					0	0	0		nc|ENSG00000265241|Q9Y5S9-2|RBM8A;ENSG00000265241|ENST00000583313|RBM8A	nc|ENSG00000265241|Q9Y5S9-2|RBM8A	nc|ENSG00000265241|Q9Y5S9-2|RBM8A	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8330688476562	2	575.83258	1149.65061	-1.7576	-0.0010121	1.176	0.00067716	-0.58162	-0.00033492	575.8332024182386	84.643	1.5251	82.382	82.02	83.545	-2.261					79	30	4	0	0	0	0.24109	1	4928	4928		88.177	15.298	1	525680			13439	9522	10974	10986	14767	14767					0.08176792288736578
GEIKNIHLNL	10	Unmodified	_GEIKNIHLNL_					0	0	0		nc|ENSG00000265241|Q9Y5S9-2|RBM8A;ENSG00000265241|ENST00000583313|RBM8A	nc|ENSG00000265241|Q9Y5S9-2|RBM8A	nc|ENSG00000265241|Q9Y5S9-2|RBM8A	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8327026367188	2	575.83258	1149.65061	0.73978	0.00042599	-0.83506	-0.00048085	-0.095278	-5.4864E-05	575.8319671195414	84.885	1.3656	82.239	81.978	83.344	-2.6463					56	27	3	0	0	0	0.17251	2	7132	7120;7132		98.582	28.727	1	445160			13440	9522	10974	10986	14768;14769	14769					0.08176792288736578
GEIKNIHLNL	10	Unmodified	_GEIKNIHLNL_					0	0	0		nc|ENSG00000265241|Q9Y5S9-2|RBM8A;ENSG00000265241|ENST00000583313|RBM8A	nc|ENSG00000265241|Q9Y5S9-2|RBM8A	nc|ENSG00000265241|Q9Y5S9-2|RBM8A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	575.83258	1149.65061	-1.3037	-0.00075072	0.86721	0.00049937	-0.4365	-0.00025135	575.8331359862441	83.665	1.5227	82.066	81.825	83.347	-1.5989	-0.16269	0.00016038	NaN	98.582	75	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	330860			13441	9522	10974	10986							0.08176792288736578
GEIKRDFIATL	11	Unmodified	_GEIKRDFIATL_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-7|MAP4;MAP4|p.E225Rfs*2|1|0.06|ENSG00000047849|chr3:47917154-47917154|C/-|frameshift_variant;MAP4-CDC25A|1|fusion;MAP4-CDC25A|2|fusion	ENSG00000047849|ENST00000683076|MAP4;MAP4-CDC25A|1|fusion	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	OvCa99_classI_Rep5	1	631.861328125	2	631.858795	1261.70304	3.5156	0.0022214	-0.86626	-0.00054735	2.6493	0.001674	631.8579562095246	88.025	0.54733	88.025	87.794	88.342	0					37	12	4	0	0	0	0.68059	1	9349	9349		36.318	5.7488	1	1852400			13442	1151;14818	10975	10987	14770	14770					0.08265330631661527
GEIKRDFIATL	11	Unmodified	_GEIKRDFIATL_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-7|MAP4;MAP4|p.E225Rfs*2|1|0.06|ENSG00000047849|chr3:47917154-47917154|C/-|frameshift_variant;MAP4-CDC25A|1|fusion;MAP4-CDC25A|2|fusion	ENSG00000047849|ENST00000683076|MAP4;MAP4-CDC25A|1|fusion	ENSG00000047849|ENST00000683076|MAP4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	631.858795	1261.70304	-0.21832	-0.00013795	5.6661	0.0035802	5.4478	0.0034422	632.3634673037886	90.389	0.30501	88.308	88.108	88.413	-2.0805	0.14179	0.0074736	NaN	36.318	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6073.5			13443	1151;14818	10975	10987							0.08265330631661527
GEIMGLRH	8	Unmodified	_GEIMGLRH_					0	0	0		tr|A0A553SHF4|A0A553SHF4_NIACIAminodeoxychorismate/anthranilatesynthasecomponentIIOS=NialliacirculansOX=1397GN=pabAPE=4SV=1	tr|A0A553SHF4|A0A553SHF4_NIACIAminodeoxychorismate/anthranilatesynthasecomponentIIOS=NialliacirculansOX=1397GN=pabAPE=4SV=1	tr|A0A553SHF4|A0A553SHF4_NIACIAminodeoxychorismate/anthranilatesynthasecomponentIIOS=NialliacirculansOX=1397GN=pabAPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.9244384765625	2	456.739637	911.464721	0.20608	9.4127E-05	-2.6497	-0.0012102	-2.4437	-0.0011161	456.73763683691254	31.269	0.48687	31.269	31.171	31.658	0					15	9	2	0	0	0	0.028476	1	1306	1306		40.573	1.7665	1	17535			13444	33266	10976	10988	14771	14771					0.0054469156839331845
GEIQAGAKL	9	Unmodified	_GEIQAGAKL_					0	0	0		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000435916.1_1_10:52025279-52025462:+|nuORF	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MSMS	OvCa99_classI_Rep5	1	443.7541198730469	2	443.753267	885.491981	1.0488	0.00046539	-0.99017	-0.00043939	0.058589	2.5999E-05	443.7527052598231	57.201	0.73207	57.201	56.918	57.65	0					29	16	2	0	0	0	0.10502	2	4789	4789;4812		95.815	10.9	1	2871300			13445	1571	10977	10989	14772;14773	14772					0.04465498380432109
GEIQEIVKTGL	11	Unmodified	_GEIQEIVKTGL_					0	0	0		COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant;nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant	COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	593.8390502929688	2	593.837528	1185.6605	2.1571	0.001281	0.033203	1.9717E-05	2.1903	0.0013007	593.8373394136602	102.18	0.98262	102.18	101.87	102.85	0					59	22	4	0	0	0	0.047022	1	11374	11374		144.77	51.171	1	4110200			13446	669	10978	10990	14774	14774					0.07509935503412635
GEIQEIVKTGL	11	Unmodified	_GEIQEIVKTGL_					0	0	0		COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant;nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant	COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	593.837528	1185.6605	-1.4288	-0.00084846	1.0261	0.00060935	-0.40265	-0.00023911	593.8379719157757	102.89	1.1837	102.2	101.89	103.07	-0.68459	-0.034794	0.001053	NaN	144.77	61	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203270			13447	669	10978	10990							0.07509935503412635
GEIQEIVKTGL	11	Unmodified	_GEIQEIVKTGL_					0	0	0		COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant;nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant	COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	593.837528	1185.6605	0.336	0.00019953	-0.76424	-0.00045384	-0.42824	-0.0002543	593.8368789773264	103.75	1.3557	102.31	102.03	103.38	-1.4347	0.076093	-0.0010734	NaN	144.77	53	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	251510			13448	669	10978	10990							0.07509935503412635
GEIQEIVKTGL	11	Unmodified	_GEIQEIVKTGL_					0	0	0		COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant;nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant	COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	593.837528	1185.6605	-0.047163	-2.8007E-05	-0.23443	-0.00013921	-0.28159	-0.00016722	593.8372428116306	104.37	1.2363	102.25	102.01	103.25	-2.1192	0.013269	-0.00044413	NaN	144.77	54	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218850			13449	669	10978	10990							0.07509935503412635
GEIRLNTLN	9	Unmodified	_GEIRLNTLN_					0	0	0		tr|A0A7D6VUG7|A0A7D6VUG7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20480PE=4SV=1	tr|A0A7D6VUG7|A0A7D6VUG7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20480PE=4SV=1	tr|A0A7D6VUG7|A0A7D6VUG7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20480PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.2885131835938	2	515.288005	1028.56146	-0.21351	-0.00011002	4.0081	0.0020654	3.7946	0.0019553	515.2894440360037	116.46	1.7212	115.1	114.1	115.82	-1.3645					46	33	2	0	0	0	0.3249	1	10877	10877		60.118	3.6845	1	89394			13450	35185	10979	10991	14775	14775					0.04831957329201941
GEISDIHTKL	10	Unmodified	_GEISDIHTKL_					0	0	0		ENSG00000183735|ENST00000331710|TBK1	ENSG00000183735|ENST00000331710|TBK1	ENSG00000183735|ENST00000331710|TBK1	MSMS	OvCa99_classI_Rep5	1	556.80078125	2	556.800946	1111.58734	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.268	1	64.268	63.768	64.768	0								0	0	0	0.035236	1	5834	5834		112.11	29.357	1				13451	8098	10980	10992	14776	14776					0.03600806780787025
GEISEKAKL	9	Unmodified	_GEISEKAKL_					0	0	0		nc|ENSG00000135679|Q00987-4|MDM2;nc|ENSG00000135679|Q00987-3|MDM2;nc|ENSG00000135679|Q00987-2|MDM2;nc|ENSG00000135679|Q00987-5|MDM2;nc|ENSG00000135679|Q00987-8|MDM2;nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987-9|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2	nc|ENSG00000135679|Q00987-4|MDM2	nc|ENSG00000135679|Q00987-4|MDM2	MULTI-MSMS	OvCa99_classI_Rep5	1	487.7798156738281	2	487.779482	973.544411	-1.3439	-0.00065552	0.71694	0.00034971	-0.62695	-0.00030581	487.7797264979424	43.975	0.83809	43.975	43.78	44.618	0					38	18	4	0	0	0	0.1944	1	2957	2957		77.318	9.8239	1	3078600			13452	4400	10981	10993	14777	14777					0.056580367233777906
GEISLLKQQL	10	Unmodified	_GEISLLKQQL_					0	0	0		nc|ENSG00000088899|O60299-2|LZTS3;ENSG00000088899|ENST00000337576|LZTS3;nc|ENSG00000061337|Q9Y250-5|LZTS1;nc|ENSG00000061337|Q9Y250-4|LZTS1;nc|ENSG00000061337|Q9Y250-3|LZTS1;nc|ENSG00000061337|Q9Y250-2|LZTS1;ENSG00000061337|ENST00000381569|LZTS1;ENSG00000107816|ENST00000454422|LZTS2	nc|ENSG00000088899|O60299-2|LZTS3;ENSG00000107816|ENST00000454422|LZTS2	nc|ENSG00000088899|O60299-2|LZTS3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.810791015625	2	564.834788	1127.65502	0.32572	0.00018398	-2.6661	-0.0015059	-2.3403	-0.0013219	564.8331795665777	101.08	1.2667	98.815	98.498	99.765	-2.2665					38	25	3	0	0	0	0.027487	1	9050	9050		123.21	2.3397	1	375100			13453	1798;2618	10982	10994	14778	14778					0.09630256711625407
GEITEERDIL	10	Unmodified	_GEITEERDIL_					0	0	0		ENST00000549935.6_1_12:54107863-54119026:-|nuORF;nc|ENSG00000012822|Q9P1Z2-4|CALCOCO1;nc|ENSG00000012822|Q9P1Z2-2|CALCOCO1;nc|ENSG00000012822|Q9P1Z2-3|CALCOCO1;ENSG00000012822|ENST00000550804|CALCOCO1	ENST00000549935.6_1_12:54107863-54119026:-|nuORF	ENST00000549935.6_1_12:54107863-54119026:-|nuORF	MSMS	OvCa99_classI_Rep5	1	587.8019409179688	2	587.801143	1173.58773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83	1	83	82.5	83.5	0								0	0	0	0.081211	1	8617	8617		79.489	24.713	1				13454	977	10983	10995	14779	14779					0.007881817100042099
GEITGEVHM	9	Unmodified	_GEITGEVHM_					0	0	0		FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant;FLNB|p.S2513Rfs*5|1|0.04|ENSG00000136068|chr3:58169710-58169711|-/GATTC|frameshift_variant;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant	FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	486.7276611328125	2	486.726392	971.438231	-0.0050991	-2.4819E-06	-0.0081939	-3.9882E-06	-0.013293	-6.47E-06	486.72625852357754	70.894	0.90427	70.894	70.603	71.507	0					53	22	4	0	0	0	0.019428	1	6821	6821		147.69	13.574	1	10320000			13455	4455	10984	10996	14780	14780					-0.04863042113595384
GEITGEVHM	9	Unmodified	_GEITGEVHM_					0	0	0		FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant;FLNB|p.S2513Rfs*5|1|0.04|ENSG00000136068|chr3:58169710-58169711|-/GATTC|frameshift_variant;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF	FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant	FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	486.726392	971.438231	0.13672	6.6546E-05	-0.33538	-0.00016324	-0.19866	-9.6692E-05	486.7263636156532	72.907	0.78175	70.507	70.22	71.001	-2.3999	-0.18317	-0.00042486	NaN	147.69	23	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19911			13456	4455	10984	10996							-0.04863042113595384
GEIVEKIGV	9	Unmodified	_GEIVEKIGV_					0	0	0		ENSG00000186141|ENST00000334163|POLR3C;POLR3C|p.L28V|1|0.14|ENSG00000186141|chr1:145825858-145825858|C/G|missense_variant	ENSG00000186141|ENST00000334163|POLR3C	ENSG00000186141|ENST00000334163|POLR3C	MULTI-MSMS	OvCa99_classI_Rep5	1	472.27777099609375	2	472.276575	942.538597	1.9823	0.00093622	0.047984	2.2662E-05	2.0303	0.00095888	472.27647191898467	80.722	0.92599	80.722	80.487	81.413	0					59	21	5	0	0	0	0.1243	2	8275	8275;8296		90.601	22.116	1	6274200			13457	8315	10985	10997	14781;14782	14781					0.06502938211713172
GEIVTEEHL	9	Unmodified	_GEIVTEEHL_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B;MAP1B|p.C1613Mfs*15|1|0.05|ENSG00000131711|chr5:72198190-72198191|-/G|frameshift_variant;ENST00000504183.1_1_5:71403304-71411655:+|nuORF	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MULTI-MSMS	OvCa99_classI_Rep5	1	513.7606201171875	2	513.758746	1025.50294	0.10173	5.2265E-05	0.15166	7.7917E-05	0.25339	0.00013018	513.7585953146936	71.815	0.57707	71.815	71.548	72.125	0					43	13	4	0	0	0	0.031958	1	6960	6960		133.81	48.453	1	4814800			13458	4083	10986	10998	14783	14783					-0.00879144035934587
GEIVTTIPTI	10	Unmodified	_GEIVTTIPTI_					0	0	0		ENST00000483848.5_1_3:57563094-57582900:-|nuORF;ENST00000493378.1_1_3:57569737-57582900:-|nuORF;ENSG00000168374|ENST00000303436|ARF4;ENST00000463733.5_1_7:127228552-127229672:+|nuORF;ENST00000470670.5_1_1:228270461-228285316:+|nuORF;ENSG00000004059|ENST00000000233|ARF5;nc|ENSG00000134287|P61204-2|ARF3;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3	ENST00000483848.5_1_3:57563094-57582900:-|nuORF;nc|ENSG00000134287|P61204-2|ARF3	nc|ENSG00000134287|P61204-2|ARF3	MULTI-MSMS	OvCa9_classI_Rep2	2	522.3021850585938	2	522.30279	1042.59103	1.2415	0.00064846	-1.7685	-0.00092368	-0.52694	-0.00027522	522.3016639909167	127.08	1.1375	126.85	126.54	127.68	-0.2359					63	22	4	0	0	0	0.15262	5	12432	12414;12419;12425;12432;12444		101.6	42.819	1	309860			13459	6896;4277	10987	10999	14784;14785;14786;14787;14788	14787					0.0714347655466554
GEIVTTIPTI	10	Unmodified	_GEIVTTIPTI_					0	0	0		ENST00000483848.5_1_3:57563094-57582900:-|nuORF;ENST00000493378.1_1_3:57569737-57582900:-|nuORF;ENSG00000168374|ENST00000303436|ARF4;ENST00000463733.5_1_7:127228552-127229672:+|nuORF;ENST00000470670.5_1_1:228270461-228285316:+|nuORF;ENSG00000004059|ENST00000000233|ARF5;nc|ENSG00000134287|P61204-2|ARF3;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3	ENST00000483848.5_1_3:57563094-57582900:-|nuORF;nc|ENSG00000134287|P61204-2|ARF3	nc|ENSG00000134287|P61204-2|ARF3	MULTI-MSMS	OvCa9_classI_Rep3	3	522.3027954101562	2	522.30279	1042.59103	0.89914	0.00046962	-1.0118	-0.00052845	-0.11263	-5.8828E-05	522.3020473167026	127.79	1.1077	126.7	126.41	127.52	-1.0933					61	21	4	0	0	0	0.22663	5	10033	10027;10033;10038;10051;10058		90.37	29.398	1	401130			13460	6896;4277	10987	10999	14789;14790;14791;14792;14793	14790					0.0714347655466554
GEIVTTIPTI	10	Unmodified	_GEIVTTIPTI_					0	0	0		ENST00000483848.5_1_3:57563094-57582900:-|nuORF;ENST00000493378.1_1_3:57569737-57582900:-|nuORF;ENSG00000168374|ENST00000303436|ARF4;ENST00000463733.5_1_7:127228552-127229672:+|nuORF;ENST00000470670.5_1_1:228270461-228285316:+|nuORF;ENSG00000004059|ENST00000000233|ARF5;nc|ENSG00000134287|P61204-2|ARF3;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3	ENST00000483848.5_1_3:57563094-57582900:-|nuORF;nc|ENSG00000134287|P61204-2|ARF3	nc|ENSG00000134287|P61204-2|ARF3	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.3016967773438	2	522.30279	1042.59103	-0.56065	-0.00029283	0.33108	0.00017292	-0.22957	-0.0001199	522.3027953700879	128.07	1.1274	126.64	126.34	127.47	-1.4357					64	21	4	0	0	0	0.44431	3	12233	12233;12246;12258		62.107	17.722	1	436450			13461	6896;4277	10987	10999	14794;14795;14796	14794					0.0714347655466554
GEKHKPRVV	9	Unmodified	_GEKHKPRVV_					0	0	0		tr|A0A7D6VSY5|A0A7D6VSY5_9CLOTPolysaccharidedeacetylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11070PE=4SV=1	tr|A0A7D6VSY5|A0A7D6VSY5_9CLOTPolysaccharidedeacetylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11070PE=4SV=1	tr|A0A7D6VSY5|A0A7D6VSY5_9CLOTPolysaccharidedeacetylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11070PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.7868041992188	2	525.314358	1048.61416	1.1218	0.0005893	3.8029	0.0019977	4.9247	0.002587	525.316303874256	109.84	0.58651	109.84	109.59	110.18	0					28	12	3	0	0	0	0.027441	1	12475	12475		55.504	14.726	1	412540			13462	35067	10988	11000	14797	14797					0.09179960182632385
GEKILPVF	8	Unmodified	_GEKILPVF_					0	0	0		ENSG00000138594|ENST00000308580|TMOD3	ENSG00000138594|ENST00000308580|TMOD3	ENSG00000138594|ENST00000308580|TMOD3	MULTI-MSMS	OvCa9_classI_Rep2	2	451.7704772949219	2	451.770929	901.527304	2.2751	0.0010278	-2.3266	-0.0010511	-0.051433	-2.3236E-05	451.7697415380278	107.92	1.326	107.7	107.39	108.72	-0.22498					71	26	4	0	0	0	0.56113	2	10110	10097;10110		71.378	5.4411	1	374100			13463	4695	10989	11001	14798;14799	14799					0.07260160908231228
GEKILPVF	8	Unmodified	_GEKILPVF_					0	0	0		ENSG00000138594|ENST00000308580|TMOD3	ENSG00000138594|ENST00000308580|TMOD3	ENSG00000138594|ENST00000308580|TMOD3	MULTI-MSMS	OvCa9_classI_Rep3	3	451.7704162597656	2	451.770929	901.527304	0.068274	3.0844E-05	-0.20413	-9.2222E-05	-0.13586	-6.1378E-05	451.7707053293227	108.75	1.5531	107.55	107.27	108.82	-1.1978					80	29	4	0	0	0	0.2589	4	7795	7778;7781;7787;7795		114.59	31.299	1	426740			13464	4695	10989	11001	14800;14801;14802;14803	14803					0.07260160908231228
GEKILPVF	8	Unmodified	_GEKILPVF_					0	0	0		ENSG00000138594|ENST00000308580|TMOD3	ENSG00000138594|ENST00000308580|TMOD3	ENSG00000138594|ENST00000308580|TMOD3	MULTI-MSMS	OvCa9_classI_Rep4_	4	451.772216796875	2	451.770929	901.527304	0.53905	0.00024353	-0.5267	-0.00023795	0.012348	5.5786E-06	451.77058250866264	109.33	1.4061	107.6	107.33	108.73	-1.7256					71	26	4	0	0	0	0.62474	1	10030	10030		58.782	7.4465	1	496170			13465	4695	10989	11001	14804	14804					0.07260160908231228
GEKILVFIP	9	Unmodified	_GEKILVFIP_					0	0	0		tr|A0A7D6VXH3|A0A7D6VXH3_9CLOTCDP-alcoholphosphatidyltransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08635PE=3SV=1	tr|A0A7D6VXH3|A0A7D6VXH3_9CLOTCDP-alcoholphosphatidyltransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08635PE=3SV=1	tr|A0A7D6VXH3|A0A7D6VXH3_9CLOTCDP-alcoholphosphatidyltransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08635PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.8018798828125	2	508.312961	1014.61137	-0.56613	-0.00028777	-3.5013	-0.0017798	-4.0674	-0.0020675	508.3107281608274	59.119	1.4914	56.339	55.789	57.281	-2.7801					60	28	3	0	0	0	0.027462	1	4404	4404		16.473	0	1	212270			13466	35281	10990	11002	14805	14805					0.10464692005132292
GEKKDEVYL	9	Unmodified	_GEKKDEVYL_					0	0	0		ENSG00000082701|ENST00000264235|GSK3B;nc|ENSG00000082701|P49841-2|GSK3B	ENSG00000082701|ENST00000264235|GSK3B	ENSG00000082701|ENST00000264235|GSK3B	MULTI-MSMS	OvCa99_classI_Rep5	1	540.7825927734375	2	540.782222	1079.54989	-0.36105	-0.00019525	0.0050833	2.7489E-06	-0.35597	-0.0001925	540.7820868009242	47.923	0.94729	47.923	47.638	48.585	0					52	21	4	0	0	0	0.2784	1	3475	3475		65.465	1.2581	1	3906300			13467	1684	10991	11003	14806	14806					0.013297155151803963
GEKKEHPGYY	10	Unmodified	_GEKKEHPGYY_					0	0	0			REV__tr|A0A553SL48|A0A553SL48_NIACISporecoatassociatedproteinCotJAOS=NialliacirculansOX=1397GN=CEQ21_19940PE=4SV=1	REV__tr|A0A553SL48|A0A553SL48_NIACISporecoatassociatedproteinCotJAOS=NialliacirculansOX=1397GN=CEQ21_19940PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	604.8191528320312	2	604.290745	1206.56694	0.16121	9.7417E-05	-3.4622	-0.0020922	-3.301	-0.0019948	604.2885992931507	48.34	0.82723	45.232	45.039	45.866	-3.1077					38	15	3	0	0	0	0.027174	1	2667	2667		20.947	0	1	83897	+		13468	30186	10992	11004	14807	14807					-0.028083638789894394
GEKKEHPGYY	10	Unmodified	_GEKKEHPGYY_					0	0	0			REV__tr|A0A553SL48|A0A553SL48_NIACISporecoatassociatedproteinCotJAOS=NialliacirculansOX=1397GN=CEQ21_19940PE=4SV=1	REV__tr|A0A553SL48|A0A553SL48_NIACISporecoatassociatedproteinCotJAOS=NialliacirculansOX=1397GN=CEQ21_19940PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	604.290745	1206.56694	-1.149	-0.00069435	-2.6788	-0.0016188	-3.8279	-0.0023131	604.2887957364188	48.183	0.39738	45.473	45.231	45.629	-2.7097	0.12036	0.00075105	NaN	20.947	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12334	+		13469	30186	10992	11004							-0.028083638789894394
GEKKLEEIL	9	Unmodified	_GEKKLEEIL_					0	0	0		FAM120B|p.R410Sfs*77|1|0.03|ENSG00000112584|chr6:170318619-170318619|G/-|frameshift_variant;nc|ENSG00000112584|Q96EK7-2|FAM120B;ENSG00000112584|ENST00000476287|FAM120B	FAM120B|p.R410Sfs*77|1|0.03|ENSG00000112584|chr6:170318619-170318619|G/-|frameshift_variant	FAM120B|p.R410Sfs*77|1|0.03|ENSG00000112584|chr6:170318619-170318619|G/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	529.8115844726562	2	529.808239	1057.60193	-0.063976	-3.3895E-05	0.025331	1.3421E-05	-0.038644	-2.0474E-05	529.8082071220539	68.923	0.74182	68.923	68.606	69.347	0					39	17	3	0	0	0	0.1944	1	6518	6518		77.318	2.2743	1	2625100			13470	2912	10993	11005	14808	14808					0.07542878928961727
GEKLVEEAL	9	Unmodified	_GEKLVEEAL_					0	0	0		ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119922|ENST00000371826|IFIT2	ENSG00000119922|ENST00000371826|IFIT2	MSMS	OvCa99_classI_Rep5	1	494.27252197265625	2	494.27149	986.528426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.637	1	77.637	77.137	78.137	0								0	0	0	0.047399	1	7837	7837		78.264	12.798	1				13471	3404	10994	11006	14809	14809					0.034623304864680904
GEKMLHAE	8	Unmodified	_GEKMLHAE_					0	0	0			REV__ENSG00000182885|ENST00000333493|ADGRG3	REV__ENSG00000182885|ENST00000333493|ADGRG3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	457.7569274902344	2	457.723652	913.432752	-1.8863	-0.00086338	2.3023	0.0010538	0.41609	0.00019046	457.7247097379334	49.918	0.72958	46.776	46.455	47.184	-3.1416					25	13	2	0	0	0	0.028476	1	2853	2853		71.296	2.5089	1	36534	+		13472	22324	10995	11007	14810	14810					-0.027427209054053492
GEKNIAIEFL	10	Unmodified	_GEKNIAIEFL_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000467263.1_1_3:160130128-160131402:+|nuORF;ENST00000468653.5_1_3:160117521-160130242:+|nuORF;ENST00000494612.1_1_3:160129827-160130324:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3135986328125	2	567.313689	1132.61282	-0.21045	-0.00011939	0.050668	2.8744E-05	-0.15978	-9.0647E-05	567.3136020936813	114.37	1.1348	114.25	113.96	115.1	-0.11777					58	22	5	0	0	0	0.31125	2	10885	10866;10885		79.489	18.517	1	241620			13473	2997	10996	11008	14811;14812	14812					0.05182281303223135
GEKNIAIEFL	10	Unmodified	_GEKNIAIEFL_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000467263.1_1_3:160130128-160131402:+|nuORF;ENST00000468653.5_1_3:160117521-160130242:+|nuORF;ENST00000494612.1_1_3:160129827-160130324:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MSMS	OvCa9_classI_Rep3	3	567.31298828125	2	567.313689	1132.61282	-0.46215	-0.00026219	-0.055095	-3.1256E-05	-0.51725	-0.00029344	567.3133830072844	115.23	1.5294	114.18	113.85	115.38	-1.055					59	30	3	0	0	0	0.32141	3	8546	8546;8564;8570		78.264	8.5953	1	254740			13474	2997	10996	11008	14813;14814;14815	14813					0.05182281303223135
GEKNIAIEFL	10	Unmodified	_GEKNIAIEFL_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000467263.1_1_3:160130128-160131402:+|nuORF;ENST00000468653.5_1_3:160117521-160130242:+|nuORF;ENST00000494612.1_1_3:160129827-160130324:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3135375976562	2	567.313689	1132.61282	0.9405	0.00053356	-1.4514	-0.00082342	-0.51093	-0.00028986	567.3126999442823	115.55	1.0391	114.15	113.82	114.86	-1.3977					45	20	4	0	0	0	0.24997	1	10761	10761		86.882	8.6178	1	282240			13475	2997	10996	11008	14816	14816					0.05182281303223135
GEKNVFEAL	9	Unmodified	_GEKNVFEAL_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-MSMS	OvCa9_classI_Rep2	2	503.7635803222656	2	503.763832	1005.51311	-0.34948	-0.00017605	0.22739	0.00011455	-0.12208	-6.1502E-05	503.76399167741886	92.972	1.6529	91.804	91.341	92.994	-1.168					87	31	4	0	0	0	0.094791	5	8290	8279;8284;8290;8296;8302		98.582	23.539	1	676190			13476	807	10997	11009	14817;14818;14819;14820;14821	14819					0.010574636892783928
GEKNVFEAL	9	Unmodified	_GEKNVFEAL_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-MSMS	OvCa9_classI_Rep3	3	503.7645568847656	2	503.763832	1005.51311	-1.5053	-0.00075834	0.88152	0.00044408	-0.62382	-0.00031426	503.7644915181979	93.616	1.3672	91.654	91.328	92.696	-1.9617					79	26	5	0	0	0	0.14445	4	6004	5994;5998;6004;6017		85.862	13.005	1	1139600			13477	807	10997	11009	14822;14823;14824;14825	14824					0.010574636892783928
GEKNVFEAL	9	Unmodified	_GEKNVFEAL_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.7643737792969	2	503.763832	1005.51311	-0.75808	-0.00038189	0.80218	0.00040411	0.044108	2.222E-05	503.7641234658958	94.306	1.4911	91.838	91.571	93.062	-2.4685					76	29	4	0	0	0	0.046778	2	8259	8259;8285		120.87	43.551	1	1024600			13478	807	10997	11009	14826;14827	14826					0.010574636892783928
GEKTEDESL	9	Unmodified	_GEKTEDESL_					0	0	0		nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP;ENST00000464190.6_1_1:46049764-46072280:+|nuORF	nc|ENSG00000132780|P49321-2|NASP	nc|ENSG00000132780|P49321-2|NASP	MULTI-MSMS	OvCa99_classI_Rep5	1	504.2296447753906	2	504.230019	1006.44548	-0.52864	-0.00026656	0.70923	0.00035762	0.18059	9.1059E-05	504.2303174988343	38.402	0.63213	38.402	38.161	38.793	0					34	13	4	0	0	0	0.07097	1	2184	2184		106.68	34.806	1	634790			13479	4173	10998	11010	14828	14828					-0.05748031032180734
GEKTISVVL	9	Unmodified	_GEKTISVVL_					0	0	0		ENSG00000073050|ENST00000262887|XRCC1;ENST00000594511.1_1_19:44078923-44079610:-|nuORF;XRCC1|p.P153Qfs*13|1|0.37|ENSG00000073050|chr19:43553640-43553640|G/-|frameshift_variant;ENST00000595789.5_1_19:44056953-44079610:-|nuORF	ENSG00000073050|ENST00000262887|XRCC1	ENSG00000073050|ENST00000262887|XRCC1	MULTI-MSMS	OvCa9_classI_Rep2	2	473.284912109375	2	473.2844	944.554247	1.5808	0.00074819	-2.0147	-0.00095353	-0.43387	-0.00020535	473.283312291307	87.947	1.6214	86.516	85.99	87.611	-1.4311					81	32	4	0	0	0	0.16264	1	7711	7711		82.75	21.779	1	353920			13480	1485	10999	11011	14829	14829					0.079752247287729
GEKTISVVL	9	Unmodified	_GEKTISVVL_					0	0	0		ENSG00000073050|ENST00000262887|XRCC1;ENST00000594511.1_1_19:44078923-44079610:-|nuORF;XRCC1|p.P153Qfs*13|1|0.37|ENSG00000073050|chr19:43553640-43553640|G/-|frameshift_variant;ENST00000595789.5_1_19:44056953-44079610:-|nuORF	ENSG00000073050|ENST00000262887|XRCC1	ENSG00000073050|ENST00000262887|XRCC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.28472900390625	2	473.2844	944.554247	0.49675	0.00023511	-0.98818	-0.00046769	-0.49143	-0.00023259	473.2838233997317	89.158	1.4369	86.555	86.136	87.573	-2.6027					64	28	3	0	0	0	0.13326	2	7635	7635;7659		88.177	10.859	1	552920			13481	1485	10999	11011	14830;14831	14830					0.079752247287729
GEKVNIISV	9	Unmodified	_GEKVNIISV_					0	0	0		nc|ENSG00000144895|Q9BY44-4|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;ENST00000469331.1_1_3:150264589-150280476:+|nuORF;ENST00000474505.5_1_3:150264589-150282188:+|nuORF	nc|ENSG00000144895|Q9BY44-4|EIF2A	nc|ENSG00000144895|Q9BY44-4|EIF2A	MULTI-MSMS	OvCa9_classI_Rep3	3	479.78314208984375	2	479.782025	957.549496	-0.73589	-0.00035307	0.93542	0.0004488	0.19953	9.5729E-05	479.78251693132546	84.937	1.5862	82.714	82.296	83.882	-2.223					70	31	3	0	0	0	0.084152	2	4957	4957;4963		101.46	13.763	1	851480			13482	5192	11000	11012	14832;14833	14832					0.0690234058599799
GEKYIEEAL	9	Unmodified	_GEKYIEEAL_					0	0	0		nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1;IFIT1B|p.Y252Ffs*15|1|0.41|ENSG00000204010|chr10:89384067-89384091|TATGTCTTTCAATATGCAGCCAAGT/-|frameshift_variant;IFIT1B|p.T306Sfs*30|1|0.07|ENSG00000204010|chr10:89384227-89384228|-/CAGCA|frameshift_variant;ENSG00000204010|ENST00000371809|IFIT1B	nc|ENSG00000185745|P09914-2|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	MULTI-MSMS	OvCa99_classI_Rep5	1	526.2701416015625	2	526.268947	1050.52334	2.1472	0.00113	-0.48243	-0.00025389	1.6648	0.00087612	526.268526964096	80.214	0.71509	80.214	79.987	80.702	0					40	16	3	0	0	0	0.1243	1	8233	8233		90.601	18.723	1	2151400			13483	8279	11001	11013	14834	14834					0.00010026623840531101
GEKYIEEAL	9	Unmodified	_GEKYIEEAL_					0	0	0		nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1;IFIT1B|p.Y252Ffs*15|1|0.41|ENSG00000204010|chr10:89384067-89384091|TATGTCTTTCAATATGCAGCCAAGT/-|frameshift_variant;IFIT1B|p.T306Sfs*30|1|0.07|ENSG00000204010|chr10:89384227-89384228|-/CAGCA|frameshift_variant;ENSG00000204010|ENST00000371809|IFIT1B	nc|ENSG00000185745|P09914-2|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	526.268947	1050.52334	0.25427	0.00013381	0.59157	0.00031133	0.84584	0.00044514	526.2695076560315	82.086	1.7539	80.437	79.415	81.169	-1.6485	0.16387	-0.00078397	NaN	90.601	74	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108860			13484	8279	11001	11013							0.00010026623840531101
GEKYIEEAL	9	Unmodified	_GEKYIEEAL_					0	0	0		nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1;IFIT1B|p.Y252Ffs*15|1|0.41|ENSG00000204010|chr10:89384067-89384091|TATGTCTTTCAATATGCAGCCAAGT/-|frameshift_variant;IFIT1B|p.T306Sfs*30|1|0.07|ENSG00000204010|chr10:89384227-89384228|-/CAGCA|frameshift_variant;ENSG00000204010|ENST00000371809|IFIT1B	nc|ENSG00000185745|P09914-2|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	526.268947	1050.52334	-1.532	-0.00080622	2.9832	0.00157	1.4512	0.00076373	526.2704944682065	82.487	1.2442	80.191	79.836	81.081	-2.2963	-0.08232	0.0017333	NaN	90.601	71	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224210			13485	8279	11001	11013							0.00010026623840531101
GEKYIEEAL	9	Unmodified	_GEKYIEEAL_					0	0	0		nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1;IFIT1B|p.Y252Ffs*15|1|0.41|ENSG00000204010|chr10:89384067-89384091|TATGTCTTTCAATATGCAGCCAAGT/-|frameshift_variant;IFIT1B|p.T306Sfs*30|1|0.07|ENSG00000204010|chr10:89384227-89384228|-/CAGCA|frameshift_variant;ENSG00000204010|ENST00000371809|IFIT1B	nc|ENSG00000185745|P09914-2|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	526.268947	1050.52334	-0.95429	-0.00050222	2.8239	0.0014861	1.8696	0.00098389	526.2705931552615	82.934	1.0718	80.251	79.93	81.002	-2.683	-0.022444	0.0015656	NaN	90.601	49	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	245380			13486	8279	11001	11013							0.00010026623840531101
GELAIKDANA	10	Unmodified	_GELAIKDANA_					0	0	0		CON__H-INV:HIT000292931;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;CON__REFSEQ:XP_092267;chr12:52897618-52898826|89|116.3|0.0|23.47|-|1|KRT8,None|1	CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8;CON__REFSEQ:XP_092267;chr12:52897618-52898826|89|116.3|0.0|23.47|-|1|KRT8,None|1	ENSG00000170421|ENST00000692008|KRT8	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.2677307128906	2	501.266739	1000.51892	-0.28106	-0.00014089	-0.89139	-0.00044683	-1.1725	-0.00058771	501.26614117772726	61.535	1.0968	58.077	57.816	58.913	-3.4577					52	22	3	0	0	0	0.4826	1	4223	4223		56.632	3.2808	1	448520		+	13487	622;610;667;317	11002	11014	14835	14835					0.018685622009343206
GELDLPILKV	10	Unmodified	_GELDLPILKV_					0	0	0		nc|ENSG00000143748|O15381-3|NVL;nc|ENSG00000143748|O15381-2|NVL;nc|ENSG00000143748|O15381-5|NVL;ENSG00000143748|ENST00000281701|NVL	nc|ENSG00000143748|O15381-3|NVL	nc|ENSG00000143748|O15381-3|NVL	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.8336181640625	2	548.834257	1095.65396	3.3538	0.0018407	-4.1855	-0.0022972	-0.83177	-0.0004565	548.8319041052441	133.25	0.92821	131.73	131.46	132.39	-1.5257					51	18	4	0	0	0	0.43433	2	12867	12855;12867		63.534	23.193	1	114100			13488	5089	11003	11015	14836;14837	14837					0.10996042342731016
GELDLPILKV	10	Unmodified	_GELDLPILKV_					0	0	0		nc|ENSG00000143748|O15381-3|NVL;nc|ENSG00000143748|O15381-2|NVL;nc|ENSG00000143748|O15381-5|NVL;ENSG00000143748|ENST00000281701|NVL	nc|ENSG00000143748|O15381-3|NVL	nc|ENSG00000143748|O15381-3|NVL	MULTI-MATCH	OvCa9_classI_Rep2	2		2	548.834257	1095.65396	0.74614	0.00040951	-1.1689	-0.00064153	-0.42275	-0.00023202	548.8335097038776	132.2	0.93408	131.97	131.74	132.67	-0.22696	0.1097	0.0010346	NaN	63.534	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87394			13489	5089	11003	11015							0.10996042342731016
GELDLPILKV	10	Unmodified	_GELDLPILKV_					0	0	0		nc|ENSG00000143748|O15381-3|NVL;nc|ENSG00000143748|O15381-2|NVL;nc|ENSG00000143748|O15381-5|NVL;ENSG00000143748|ENST00000281701|NVL	nc|ENSG00000143748|O15381-3|NVL	nc|ENSG00000143748|O15381-3|NVL	MULTI-MATCH	OvCa9_classI_Rep3	3		2	548.834257	1095.65396	-0.75324	-0.0004134	0.13333	7.3177E-05	-0.61991	-0.00034023	548.8342142814952	133.01	0.83319	131.89	131.58	132.42	-1.1249	0.02453	0.002464	NaN	63.534	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53324			13490	5089	11003	11015							0.10996042342731016
GELDLSLEN	9	Unmodified	_GELDLSLEN_					0	0	0		ENST00000237841.5_1_12:3950645-3951302:+|nuORF;nc|ENSG00000164164|Q01804-5|OTUD4;nc|ENSG00000164164|Q01804-3|OTUD4;ENSG00000164164|ENST00000447906|OTUD4	ENST00000237841.5_1_12:3950645-3951302:+|nuORF	ENST00000237841.5_1_12:3950645-3951302:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2918701171875	2	495.242929	988.471305	2.7438	0.0013588	0.1562	7.7355E-05	2.9	0.0014362	495.2427694252661	99.11	0.40141	99.11	98.916	99.318	0					16	9	2	0	0	0	0.027418	1	10963	10963		68.787	2.3575	1	361620			13491	6422	11004	11016	14838	14838					-0.023391367898966564
GELEEKKRQKR	11	Unmodified	_GELEEKKRQKR_					0	0	0		ENST00000262188.12_1_7:150945671-150945761:-|nuORF	ENST00000262188.12_1_7:150945671-150945761:-|nuORF	ENST00000262188.12_1_7:150945671-150945761:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.6034240722656	3	467.603797	1399.78956	-0.53423	-0.00024981	0.53252	0.00024901	-0.0017111	-8.001E-07	467.60392249960523	40.578	1.6107	37.623	37.112	38.723	-2.9541					84	30	4	0	0	0	0.69015	1	1751	1751		33.039	14.508	1	365310			13492	9886	11005	11017	14839	14839					0.10565710186187971
GELEEKKRQKR	11	Unmodified	_GELEEKKRQKR_					0	0	0		ENST00000262188.12_1_7:150945671-150945761:-|nuORF	ENST00000262188.12_1_7:150945671-150945761:-|nuORF	ENST00000262188.12_1_7:150945671-150945761:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	467.603797	1399.78956	-0.0898	-4.1991E-05	0.0029141	1.3627E-06	-0.086886	-4.0628E-05	467.6037123823669	40.291	1.0866	37.582	37.302	38.389	-2.7097	-0.020871	-0.00030462	NaN	33.039	52	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87147			13493	9886	11005	11017							0.10565710186187971
GELGNGNIKL	10	Unmodified	_GELGNGNIKL_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	OvCa99_classI_Rep5	1	507.78460693359375	2	507.782556	1013.55056	1.606	0.0008155	1.1421	0.00057996	2.7481	0.0013955	507.78298851819	79.382	1.1148	79.382	78.996	80.111	0					76	27	4	0	0	0	0.26424	1	8082	8082		85.161	10.118	1	6571900			13494	4156	11006	11018	14840	14840					0.04432554954883017
GELGNGNIKL	10	Unmodified	_GELGNGNIKL_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	OvCa9_classI_Rep3	3	507.7840270996094	2	507.782556	1013.55056	-0.88392	-0.00044884	0.21561	0.00010948	-0.66831	-0.00033936	507.7825696583364	81.399	1.875	79.077	78.286	80.161	-2.3226					96	36	4	0	0	0	0.22663	2	4521	4521;4527		90.37	10.657	1	1121100			13495	4156	11006	11018	14841;14842	14841					0.04432554954883017
GELHRILLVS	10	Unmodified	_GELHRILLVS_					0	0	0		tr|A0A7D6VN74|A0A7D6VN74_9CLOTStageVsporulationproteinADOS=ClostridiumintestinaleOX=36845GN=spoVADPE=4SV=1	tr|A0A7D6VN74|A0A7D6VN74_9CLOTStageVsporulationproteinADOS=ClostridiumintestinaleOX=36845GN=spoVADPE=4SV=1	tr|A0A7D6VN74|A0A7D6VN74_9CLOTStageVsporulationproteinADOS=ClostridiumintestinaleOX=36845GN=spoVADPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.8099975585938	2	568.842948	1135.67134	1.8036	0.001026	3.271	0.0018607	5.0746	0.0028866	568.8446527037516	125.51	0.41355	125.51	125.39	125.81	0					13	9	2	0	0	0	0.026956	1	14521	14521		34.173	1.3601	1	85518			13496	34681	11007	11019	14843	14843					0.10893382668359664
GELHSKDL	8	Unmodified	_GELHSKDL_					0	0	0			REV__ENSG00000196498|ENST00000405201|NCOR2	REV__ENSG00000196498|ENST00000405201|NCOR2	MULTI-MSMS	OvCa99_classI_Rep5	1	449.73529052734375	2	449.735074	897.455596	-0.44814	-0.00020154	0.49797	0.00022396	0.049831	2.2411E-05	449.73516579579837	34.888	0.56716	34.888	34.679	35.246	0					21	11	2	0	0	0	0.29515	1	1714	1714		108.09	0	1	891380	+		13497	22837	11008	11020	14844	14844					0.0027662148370382056
GELIVEELLL	10	Unmodified	_GELIVEELLL_					0	0	0		ENSG00000186141|ENST00000334163|POLR3C	ENSG00000186141|ENST00000334163|POLR3C	ENSG00000186141|ENST00000334163|POLR3C	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.33203125	2	564.331547	1126.64854	-0.055269	-3.119E-05	0.77881	0.00043951	0.72354	0.00040832	564.3316411586119	118.55	1.8273	117.2	116.73	118.56	-1.3444					94	34	4	0	0	0	0.45225	1	11100	11100		60.972	2.19	1	382140			13498	8315	11009	11021	14845	14845					0.09028318760238108
GELKFEPHI	9	Unmodified	_GELKFEPHI_					0	0	0		ATP11A-NUCB2|1|fusion;ENSG00000070081|ENST00000529010|NUCB2	ATP11A-NUCB2|1|fusion	ATP11A-NUCB2|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	535.2886962890625	2	535.287474	1068.5604	1.8621	0.00099674	0.40714	0.00021794	2.2692	0.0012147	535.2875582005267	80.741	0.71875	80.741	80.443	81.162	0					47	16	4	0	0	0	0.14855	1	8280	8280		85.161	13.865	1	6056100			13499	127	11010	11022	14846	14846					0.028857429602794582
GELKHGPLAL	10	Unmodified	_GELKHGPLAL_					0	0	0		GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant;ENSG00000131459|ENST00000253778|GFPT2;nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant;nc|ENSG00000198380|Q06210-2|GFPT1	GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	517.8026123046875	2	517.803291	1033.59203	0.52742	0.0002731	-1.0147	-0.00052544	-0.48733	-0.00025234	517.8026622736127	70.658	1.1873	68.088	67.765	68.952	-2.5707					58	22	4	0	0	0	0.47142	1	5665	5665		58.23	0	1	622630			13500	4066;8812	11011	11023	14847	14847					0.07657735714224145
GELKHGPLAL	10	Unmodified	_GELKHGPLAL_					0	0	0		GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant;ENSG00000131459|ENST00000253778|GFPT2;nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant;nc|ENSG00000198380|Q06210-2|GFPT1	GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.8043212890625	2	517.803291	1033.59203	-1.3262	-0.00068671	0.86844	0.00044968	-0.45777	-0.00023703	517.8036609158361	71.811	1.2666	68.355	67.975	69.241	-3.4563					61	25	3	0	0	0	0.09252	2	5489	5489;5501		115.49	0	1	743190			13501	4066;8812	11011	11023	14848;14849	14848					0.07657735714224145
GELKHGPLAL	10	Unmodified	_GELKHGPLAL_					0	0	0		GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant;ENSG00000131459|ENST00000253778|GFPT2;nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant;nc|ENSG00000198380|Q06210-2|GFPT1	GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	517.803291	1033.59203	0.92425	0.00047858	-1.2075	-0.00062524	-0.28322	-0.00014665	517.8025176266459	70.806	1.2118	68.086	67.801	69.013	-2.7196	-0.090086	-0.00060887	NaN	115.49	43	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185270			13502	4066;8812	11011	11023							0.07657735714224145
GELKIAYQL	9	Unmodified	_GELKIAYQL_					0	0	0		COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant;nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant	COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	517.7991943359375	2	517.797675	1033.5808	1.713	0.000887	0.094512	4.8938E-05	1.8075	0.00093594	517.7977442644116	99.942	1.2874	99.942	99.361	100.65	0					64	30	5	0	0	0	0.060996	2	11082	11052;11082		112.41	19.268	1	11870000			13503	669	11012	11024	14850;14851	14851					0.06534913620089355
GELKIAYQL	9	Unmodified	_GELKIAYQL_					0	0	0		COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant;nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant	COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	517.7964477539062	2	517.797675	1033.5808	-0.72985	-0.00037792	-0.16252	-8.4151E-05	-0.89237	-0.00046207	517.797425376904	100.28	1.2895	99.454	99.113	100.4	-0.83052					71	25	4	0	0	0	0.16264	2	9173	9173;9180		82.75	8.4954	1	273200			13504	669	11012	11024	14852;14853	14852					0.06534913620089355
GELKIAYQL	9	Unmodified	_GELKIAYQL_					0	0	0		COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant;nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant	COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	517.798583984375	2	517.797675	1033.5808	-0.45564	-0.00023593	-0.10027	-5.1919E-05	-0.5559	-0.00028785	517.7974652448145	101.07	1.3044	99.467	99.194	100.5	-1.6053					71	24	5	0	0	0	0.035142	2	6889	6889;6902		131.03	37.836	1	416220			13505	669	11012	11024	14854;14855	14854					0.06534913620089355
GELKIAYQL	9	Unmodified	_GELKIAYQL_					0	0	0		COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant;nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant	COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.7984008789062	2	517.797675	1033.5808	-0.66763	-0.0003457	-0.40035	-0.0002073	-1.068	-0.000553	517.7973369502254	101.65	1.3896	99.38	99.113	100.5	-2.2665					67	26	4	0	0	0	0.1243	3	9142	9130;9142;9161		90.601	18.91	1	379350			13506	669	11012	11024	14856;14857;14858	14857					0.06534913620089355
GELKIRPH	8	Unmodified	_GELKIRPH_					0	0	0			REV__ENSG00000249693|ENST00000512175|THEGL	REV__ENSG00000249693|ENST00000512175|THEGL	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.2995300292969	2	475.282526	948.550499	0.28621	0.00013603	-3.8026	-0.0018073	-3.5164	-0.0016713	475.27995107672587	64.874	0.51793	62.149	62.023	62.541	-2.7245					13	9	2	0	0	0	0.028476	1	5008	5008		34.173	0	1	19944	+		13507	23489	11013	11025	14859	14859					0.07416599745556596
GELKKAHK	8	Unmodified	_GELKKAHK_					0	0	0			REV__tr|A0A553SPF2|A0A553SPF2_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_26240PE=4SV=1	REV__tr|A0A553SPF2|A0A553SPF2_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_26240PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	455.7768249511719	2	455.777077	909.5396	0.44756	0.00020399	-0.79005	-0.00036009	-0.34249	-0.0001561	455.77664816232084	39.294	1.4879	36.584	36.31	37.798	-2.7097					84	29	4	0	0	0	0.50674	1	1911	1911		76.847	18.065	1	978610	+		13508	30531	11014	11026	14860	14860					0.08121197371269773
GELKKAHK	8	Unmodified	_GELKKAHK_					0	0	0			REV__tr|A0A553SPF2|A0A553SPF2_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_26240PE=4SV=1	REV__tr|A0A553SPF2|A0A553SPF2_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_26240PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	455.7767639160156	2	455.777077	909.5396	0.0087953	4.0087E-06	-0.87875	-0.00040051	-0.86995	-0.00039651	455.7767083832948	39.55	2.1484	36.624	36.346	38.494	-2.9264					122	41	5	0	0	0	0.64026	1	1688	1688		55.504	7.5886	1	3879400	+		13509	30531	11014	11026	14861	14861					0.08121197371269773
GELLIKRPS	9	Unmodified	_GELLIKRPS_					0	0	0			REV__ENST00000497684.1_1_3:41973315-41996251:-|nuORF	REV__ENST00000497684.1_1_3:41973315-41996251:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.8156433105469	2	506.811116	1011.60768	-0.18821	-9.5385E-05	0.035587	1.8036E-05	-0.15262	-7.7348E-05	506.81122431436455	107.77	0.92354	107.46	107.02	107.94	-0.30836					30	18	2	0	0	0	0.027448	1	10044	10044		35.618	0	1	83682	+		13510	21339	11015	11027	14862	14862					0.1023402223128187
GELLMHPVL	9	Unmodified	_GELLMHPVL_					0	0	0		PSMD13|p.L315Pfs*59|1|0.26|ENSG00000185627|chr11:251842-251843|-/T|frameshift_variant;ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13	PSMD13|p.L315Pfs*59|1|0.26|ENSG00000185627|chr11:251842-251843|-/T|frameshift_variant	PSMD13|p.L315Pfs*59|1|0.26|ENSG00000185627|chr11:251842-251843|-/T|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	504.7820739746094	2	504.78097	1007.54739	2.4915	0.0012577	0.14569	7.3542E-05	2.6372	0.0013312	504.7808141784824	106.23	0.65894	106.23	105.92	106.58	0					29	13	3	0	0	0	0.027215	1	11948	11948		138.48	63.963	1	1389800			13511	8270	11016	11028	14863	14863					0.04391588576527283
GELLMHPVL	9	Unmodified	_GELLMHPVL_					0	0	0		PSMD13|p.L315Pfs*59|1|0.26|ENSG00000185627|chr11:251842-251843|-/T|frameshift_variant;ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13	PSMD13|p.L315Pfs*59|1|0.26|ENSG00000185627|chr11:251842-251843|-/T|frameshift_variant	PSMD13|p.L315Pfs*59|1|0.26|ENSG00000185627|chr11:251842-251843|-/T|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	504.78097	1007.54739	-0.47772	-0.00024114	-0.024362	-1.2297E-05	-0.50208	-0.00025344	504.7811304914383	106.78	0.59521	106.47	106.27	106.87	-0.30836	0.11896	-0.00010657	NaN	138.48	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21647			13512	8270	11016	11028							0.04391588576527283
GELSNVLQA	9	Unmodified	_GELSNVLQA_					0	0	0			REV__ENSG00000104059|ENST00000261275|ENTREP2	REV__ENSG00000104059|ENST00000261275|ENTREP2	MULTI-MSMS	OvCa99_classI_Rep5	1	465.7491760253906	2	465.748182	929.481811	3.3594	0.0015646	-0.34915	-0.00016262	3.0102	0.001402	465.74797252882956	88.076	0.41737	88.076	87.881	88.298	0					17	9	2	0	0	0	0.1944	1	9354	9354		77.318	6.5014	1	866290	+		13513	17642	11017	11029	14864	14864					0.014248906551983964
GELSNVLQA	9	Unmodified	_GELSNVLQA_					0	0	0			REV__ENSG00000104059|ENST00000261275|ENTREP2	REV__ENSG00000104059|ENST00000261275|ENTREP2	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	465.748182	929.481811	3.3594	0.0015646	-0.34915	-0.00016262	3.0102	0.001402	465.74797252882956	88.076	0.41737	88.076	87.881	88.298	0	0	0	NaN	77.318	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	866290	+		13514	17642	11017	11029							0.014248906551983964
GELTGEVRM	9	Unmodified	_GELTGEVRM_					0	0	0		ENSG00000128591|ENST00000325888|FLNC;nc|ENSG00000128591|Q14315-2|FLNC;FLNC|p.I2110Tfs*16|1|0.33|ENSG00000128591|chr7:128853588-128853591|ATCA/-|frameshift_variant	ENSG00000128591|ENST00000325888|FLNC	ENSG00000128591|ENST00000325888|FLNC	MSMS	OvCa99_classI_Rep5	1	496.2487487792969	2	496.247492	990.48043	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.706	1	69.706	69.206	70.206	0								0	0	0	0.025443	1	6647	6647		124.08	0	1				13515	3890	11018	11030	14865	14865					-0.015190667052138451
GELTGEVRM	9	Unmodified	_GELTGEVRM_					0	0	0		ENSG00000128591|ENST00000325888|FLNC;nc|ENSG00000128591|Q14315-2|FLNC;FLNC|p.I2110Tfs*16|1|0.33|ENSG00000128591|chr7:128853588-128853591|ATCA/-|frameshift_variant	ENSG00000128591|ENST00000325888|FLNC	ENSG00000128591|ENST00000325888|FLNC	MSMS	OvCa99_classI_Rep5	1	496.24884033203125	2	496.247492	990.48043	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.898	1	69.898	69.398	70.398	0								0	0	0	0.028307	1	6674	6674		90.601	0	1				13516	3890	11018	11030	14866	14866					-0.015190667052138451
GELTGEVRM	9	Unmodified	_GELTGEVRM_					0	0	0		ENSG00000128591|ENST00000325888|FLNC;nc|ENSG00000128591|Q14315-2|FLNC;FLNC|p.I2110Tfs*16|1|0.33|ENSG00000128591|chr7:128853588-128853591|ATCA/-|frameshift_variant	ENSG00000128591|ENST00000325888|FLNC	ENSG00000128591|ENST00000325888|FLNC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.82196044921875	2	496.247492	990.48043	-1.2795	-0.00063493	1.7671	0.00087692	0.48765	0.000242	496.2486406535365	72.42	1.4581	69.024	68.472	69.93	-3.3961					78	29	4	0	0	0	0.027411	1	5567	5567		90.601	0	1	337930			13517	3890	11018	11030	14867	14867					-0.015190667052138451
GEMAYAKP	8	Unmodified	_GEMAYAKP_					0	0	0			REV__tr|A0A553SKP3|A0A553SKP3_NIACIGTPcyclohydrolase1type2homologOS=NialliacirculansOX=1397GN=CEQ21_19105PE=3SV=1	REV__tr|A0A553SKP3|A0A553SKP3_NIACIGTPcyclohydrolase1type2homologOS=NialliacirculansOX=1397GN=CEQ21_19105PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	434.26220703125	2	433.707471	865.400389	0.41807	0.00018132	-1.9801	-0.0008588	-1.5621	-0.00067748	433.706421591216	46.997	0.44559	46.997	46.762	47.208	0					19	9	3	0	0	0	0.028476	1	3343	3343		26.693	0	1	123900	+		13518	30142	11019	11031	14868	14868					-0.03769508308414515
GEMGCLLL	8	Unmodified	_GEMGCLLL_					0	0	0			REV__ENST00000328381.9_2_17:29325902-29325971:+|nuORF	REV__ENST00000328381.9_2_17:29325902-29325971:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	418.72332763671875	2	418.20625	834.397946	0.81067	0.00033903	-0.12435	-5.2003E-05	0.68633	0.00028703	418.20612804424445	46.037	0.44024	46.037	45.844	46.284	0					19	9	3	0	0	0	0.028476	1	3252	3252		24.203	1.1603	1	356810	+		13519	24508	11020	11032	14869	14869					-0.025876800377204745
GEMKSGVPVL	10	Unmodified	_GEMKSGVPVL_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000462577.5_1_10:112645037-112653861:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MSMS	OvCa99_classI_Rep5	1	508.7765808105469	2	508.775885	1015.53722	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.988	1	80.988	80.488	81.488	0								0	0	0	0.10961	1	8327	8327		65.465	15.929	1				13520	5511	11021	11033	14870	14870					0.03006980851307617
GEMKSGVPVL	10	Oxidation (M)	_GEM(Oxidation (M))KSGVPVL_		GEM(1)KSGVPVL		GEM(96)KSGVPVL	0	0	1		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000462577.5_1_10:112645037-112653861:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.7745361328125	2	516.773342	1031.53213	-1.2149	-0.00062781	1.5333	0.00079237	0.31845	0.00016457	516.7739329805586	73.385	1.7754	69.989	69.64	71.415	-3.3961					70	36	4	0	0	0	0.19075	2	5675	5675;5685		95.815	23.97	1	1077800			13521	5511	11021	11034	14871;14872	14871		182			0.017626769886874172
GEMKSGVPVL	10	Oxidation (M)	_GEM(Oxidation (M))KSGVPVL_					0	0	1		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000462577.5_1_10:112645037-112653861:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	516.773342	1031.53213	0.36159	0.00018686	-0.086361	-4.4629E-05	0.27523	0.00014223	516.7730931900666	72.322	2.1972	69.815	69.329	71.526	-2.5071	-0.087067	-0.0006187	NaN	95.815	75	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	310040			13522	5511	11021	11034				182			0.017626769886874172
GEMREMQQL	9	Unmodified	_GEMREMQQL_					0	0	0		ENSG00000108055|ENST00000361804|SMC3;ENST00000424783.1_1_2:99718519-99719212:+|nuORF	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MSMS	OvCa99_classI_Rep5	1	561.2593383789062	2	561.257533	1120.50051	0.05957	3.3434E-05	0.5933	0.00033299	0.65287	0.00036643	561.2579307376697	66.394	0.36346	66.394	66.212	66.575	0					21	8	4	0	0	0	0.1149	1	6163	6163		93.143	31.036	1	2627900			13523	2636	11022	11035	14873	14873					-0.054916390369044166
GEMRKRFE	8	Unmodified	_GEMRKRFE_					0	0	0			REV__tr|A0A7D6VWS7|A0A7D6VWS7_9CLOTXanthinephosphoribosyltransferaseOS=ClostridiumintestinaleOX=36845GN=xptPE=3SV=1	REV__tr|A0A7D6VWS7|A0A7D6VWS7_9CLOTXanthinephosphoribosyltransferaseOS=ClostridiumintestinaleOX=36845GN=xptPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.8250732421875	2	526.768926	1051.5233	-1.9637	-0.0010344	-1.6553	-0.00087196	-3.619	-0.0019064	526.7693509076307	72.818	1.1128	69.421	69.156	70.269	-3.3961					26	22	2	0	0	0	0.028476	1	5594	5594		30.504	0	1	187120	+		13524	31755	11023	11036	14874	14874					-0.0004025185712634993
GENADSQIKL	10	Unmodified	_GENADSQIKL_					0	0	0		nc|ENSG00000189060|P07305-2|H1-0;ENSG00000189060|ENST00000340857|H1-0	nc|ENSG00000189060|P07305-2|H1-0	nc|ENSG00000189060|P07305-2|H1-0	MULTI-MSMS	OvCa99_classI_Rep5	1	537.776123046875	2	537.774928	1073.5353	-0.9196	-0.00049454	-0.50477	-0.00027145	-1.4244	-0.00076599	537.7746372681527	65.961	1.1136	65.961	65.665	66.779	0					59	27	4	0	0	0	0.051894	2	6072	6072;6103		128.35	32.533	1	17308000			13525	8531	11024	11037	14875;14876	14875					0.001476433670404731
GENDFHFAL	9	Unmodified	_GENDFHFAL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;COL6A3|p.T1393Cfs*9|1|0.09|ENSG00000163359|chr2:237371828-237371840|GCTCCCGGAAGGT/-|frameshift_variant;COL6A3|p.K1001Nfs*34|1|0.23|ENSG00000163359|chr2:237376800-237376839|TTTTAAGAGATTCACTATCTGTGGATGAAGATCTCCAATC/-|frameshift_variant;COL6A3|p.L475Ifs*14|1|0.13|ENSG00000163359|chr2:237381374-237381389|CCTGTCCGATTTCCAG/-|frameshift_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	525.2390747070312	2	525.237981	1048.46141	1.194	0.00062716	1.4811	0.00077796	2.6752	0.0014051	525.2384594098204	109.94	0.71964	109.94	109.64	110.35	0					32	15	3	0	0	0	0.1944	1	12463	12463		77.318	25.79	1	982980			13526	6293	11025	11038	14877	14877					-0.060882800046329066
GENDRGVSFTF	11	Unmodified	_GENDRGVSFTF_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;PLB1-PPP1CB|1|fusion;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENST00000532279.1_1_11:67166350-67167062:-|nuORF;ENST00000462832.5_1_2:29006774-29038903:+|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	nc|ENSG00000186298|P36873-2|PPP1CC	MULTI-MSMS	OvCa9_classI_Rep3	3	614.784912109375	2	614.783284	1227.55202	1.0413	0.00064017	-0.99759	-0.0006133	0.043716	2.6876E-05	614.7825885348656	99.18	1.283	97.495	97.061	98.344	-1.685					71	24	4	0	0	0	0.076604	4	6667	6655;6662;6667;6674		102.06	27.018	1	825560			13527	8328;7303;9139	11026	11039	14878;14879;14880;14881	14880					-0.052658557470067535
GENDRGVSFTF	11	Unmodified	_GENDRGVSFTF_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;PLB1-PPP1CB|1|fusion;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENST00000532279.1_1_11:67166350-67167062:-|nuORF;ENST00000462832.5_1_2:29006774-29038903:+|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	nc|ENSG00000186298|P36873-2|PPP1CC	MULTI-MSMS	OvCa9_classI_Rep4_	4	614.7841186523438	2	614.783284	1227.55202	-0.69044	-0.00042447	0.42232	0.00025963	-0.26812	-0.00016484	614.7834486429165	99.769	1.4854	97.443	97.108	98.593	-2.3253					83	28	5	0	0	0	0.0086711	1	8908	8908		162.64	69.493	1	705570			13528	8328;7303;9139	11026	11039	14882	14882					-0.052658557470067535
GENDRGVSFTF	11	Unmodified	_GENDRGVSFTF_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;PLB1-PPP1CB|1|fusion;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;ENST00000532279.1_1_11:67166350-67167062:-|nuORF;ENST00000462832.5_1_2:29006774-29038903:+|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	nc|ENSG00000186298|P36873-2|PPP1CC	MULTI-MATCH	OvCa9_classI_Rep2	2		2	614.783284	1227.55202	-0.94623	-0.00058173	0.20978	0.00012897	-0.73645	-0.00045276	614.7833295305617	98.437	1.5357	97.544	97.168	98.703	-0.89306	0.049734	0.00023261	NaN	162.64	89	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	413150			13529	8328;7303;9139	11026	11039							-0.052658557470067535
GENEDLLKL	9	Unmodified	_GENEDLLKL_					0	0	0		ENST00000460483.5_1_10:112057460-112064550:-|nuORF;ENST00000471297.1_1_10:112058551-112064550:-|nuORF;ENSG00000119953|ENST00000369603|SMNDC1	ENST00000460483.5_1_10:112057460-112064550:-|nuORF	ENST00000460483.5_1_10:112057460-112064550:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	515.7763061523438	2	515.774396	1029.53424	2.094	0.00108	0.4598	0.00023715	2.5538	0.0013172	515.7746305374477	95.015	0.92496	95.015	94.69	95.615	0					65	21	4	0	0	0	0.13326	1	10349	10349		88.177	3.0161	1	3369600			13530	3408	11027	11040	14883	14883					0.02065428998139396
GENEDLLKL	9	Unmodified	_GENEDLLKL_					0	0	0		ENST00000460483.5_1_10:112057460-112064550:-|nuORF;ENST00000471297.1_1_10:112058551-112064550:-|nuORF;ENSG00000119953|ENST00000369603|SMNDC1	ENST00000460483.5_1_10:112057460-112064550:-|nuORF	ENST00000460483.5_1_10:112057460-112064550:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.774396	1029.53424	0.36853	0.00019008	-0.30255	-0.00015605	0.065979	3.403E-05	515.7739295800253	96.433	0.93578	95.405	95.113	96.048	-1.0281	0.10118	-0.00011918	NaN	88.177	46	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118250			13531	3408	11027	11040							0.02065428998139396
GENEDLLKL	9	Unmodified	_GENEDLLKL_					0	0	0		ENST00000460483.5_1_10:112057460-112064550:-|nuORF;ENST00000471297.1_1_10:112058551-112064550:-|nuORF;ENSG00000119953|ENST00000369603|SMNDC1	ENST00000460483.5_1_10:112057460-112064550:-|nuORF	ENST00000460483.5_1_10:112057460-112064550:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	515.774396	1029.53424	-0.091332	-4.7107E-05	0.60622	0.00031267	0.51488	0.00026556	515.7742648900382	97.151	0.85326	95.392	95.157	96.011	-1.7595	0.088158	0.00081826	NaN	88.177	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	192650			13532	3408	11027	11040							0.02065428998139396
GENEDLLKL	9	Unmodified	_GENEDLLKL_					0	0	0		ENST00000460483.5_1_10:112057460-112064550:-|nuORF;ENST00000471297.1_1_10:112058551-112064550:-|nuORF;ENSG00000119953|ENST00000369603|SMNDC1	ENST00000460483.5_1_10:112057460-112064550:-|nuORF	ENST00000460483.5_1_10:112057460-112064550:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	515.774396	1029.53424	0.35955	0.00018545	-0.7977	-0.00041143	-0.43815	-0.00022599	515.7738567306702	97.782	0.75475	95.403	95.166	95.921	-2.3786	0.099266	-0.00062995	NaN	88.177	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166310			13533	3408	11027	11040							0.02065428998139396
GENEREFHQEF	11	Unmodified	_GENEREFHQEF_					0	0	0			REV__nc|ENSG00000032219|P29374-3|ARID4A	REV__nc|ENSG00000032219|P29374-3|ARID4A	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.5515441894531	3	474.540862	1420.60076	-0.58605	-0.00027811	-3.843	-0.0018236	-4.429	-0.0021018	474.5390831668528	37.625	0.13693	37.625	37.531	37.668	0					4	2	2	0	0	0	0.026101	1	2069	2069		21.032	5.6991	1	7612.1	+		13534	16589	11028	11041	14884	14884					-0.09271987177908159
GENGHSTDTL	10	Unmodified	_GENGHSTDTL_					0	0	0		nc|ENSG00000168056|Q9NS15-2|LTBP3;ENSG00000168056|ENST00000301873|LTBP3	nc|ENSG00000168056|Q9NS15-2|LTBP3	nc|ENSG00000168056|Q9NS15-2|LTBP3	MULTI-MSMS	OvCa99_classI_Rep5	1	515.7257080078125	2	515.725435	1029.43632	-0.4514	-0.0002328	0.24833	0.00012807	-0.20306	-0.00010473	515.7254346299266	35.501	0.73849	35.501	35.246	35.984	0					30	15	3	0	0	0	0.36605	1	1795	1795		72.879	15.068	1	485800			13535	6870	11029	11042	14885	14885					-0.07722379597862528
GENISNFLSL	10	Unmodified	_GENISNFLSL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OvCa99_classI_Rep5	1	547.2816772460938	2	547.279846	1092.54514	1.1101	0.00060755	1.2451	0.00068144	2.3553	0.001289	547.280464555389	144.67	0.53294	144.67	144.45	144.99	0					23	10	3	0	0	0	0.10517	1	16923	16923		112.3	38.04	1	176330			13536	2048	11030	11043	14886	14886					0.002568313724395921
GENPFATVKL	10	Unmodified	_GENPFATVKL_					0	0	0		ENSG00000006453|ENST00000005260|BAIAP2L1;SHFM1-BAIAP2L1|1|fusion	ENSG00000006453|ENST00000005260|BAIAP2L1	ENSG00000006453|ENST00000005260|BAIAP2L1	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.2935180664062	2	538.292756	1074.57096	-1.627	-0.00087583	1.9241	0.0010357	0.29702	0.00015988	538.2937415533697	106.4	1.4005	104.38	104.1	105.5	-2.0161					62	26	3	0	0	0	0.32141	1	9696	9696		78.264	6.3863	1	320030			13537	877	11031	11044	14887	14887					0.036657256147236694
GENPFATVKL	10	Unmodified	_GENPFATVKL_					0	0	0		ENSG00000006453|ENST00000005260|BAIAP2L1;SHFM1-BAIAP2L1|1|fusion	ENSG00000006453|ENST00000005260|BAIAP2L1	ENSG00000006453|ENST00000005260|BAIAP2L1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	538.292756	1074.57096	-1.1959	-0.00064377	1.1292	0.00060783	-0.066767	-3.594E-05	538.2932896678075	105.04	1.1906	104.61	104.36	105.55	-0.43642	0.11744	3.4908E-05	NaN	78.264	55	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199890			13538	877	11031	11044							0.036657256147236694
GENPFATVKL	10	Unmodified	_GENPFATVKL_					0	0	0		ENSG00000006453|ENST00000005260|BAIAP2L1;SHFM1-BAIAP2L1|1|fusion	ENSG00000006453|ENST00000005260|BAIAP2L1	ENSG00000006453|ENST00000005260|BAIAP2L1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	538.292756	1074.57096	1.4131	0.00076068	-1.4597	-0.00078576	-0.046585	-2.5076E-05	538.2919021412719	105.83	1.2988	104.48	104.15	105.44	-1.3482	-0.009928	-0.0027523	NaN	78.264	51	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222370			13539	877	11031	11044							0.036657256147236694
GEPDHNEAL	9	Unmodified	_GEPDHNEAL_					0	0	0		ENST00000457179.5_1_22:22317029-22324763:-|nuORF;ENST00000444502.5_1_22:22313806-22324763:-|nuORF;nc|ENSG00000100038|O95985-3|TOP3B;nc|ENSG00000100038|O95985-2|TOP3B;ENSG00000100038|ENST00000357179|TOP3B	ENST00000457179.5_1_22:22317029-22324763:-|nuORF	ENST00000457179.5_1_22:22317029-22324763:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	491.2171630859375	2	491.217246	980.419939	-0.77206	-0.00037925	0.46522	0.00022853	-0.30684	-0.00015072	491.2173802793726	42.408	1.3298	42.408	41.897	43.227	0					87	30	4	0	0	0	0.14998	3	2700	2700;2724;2755		84.916	10.66	1	3160700			13540	2000	11032	11045	14888;14889;14890	14888					-0.07105460763943938
GEPDPEFEAIL	11	Unmodified	_GEPDPEFEAIL_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	OvCa99_classI_Rep5	1	609.2943725585938	2	608.790244	1215.56593	2.1803	0.0013273	-0.016981	-1.0338E-05	2.1633	0.001317	608.7900859512843	136.58	0.95242	136.58	136.21	137.16	0					60	19	5	0	0	0	0.43993	2	15903	15903;15923		58.23	6.7022	1	1001800			13541	8736	11033	11046	14891;14892	14891					-0.03322623038570782
GEPDPEFEAIL	11	Unmodified	_GEPDPEFEAIL_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	OvCa9_classI_Rep2	2	608.7903442382812	2	608.790244	1215.56593	-0.48263	-0.00029382	0.56052	0.00034124	0.077896	4.7423E-05	608.7904264602415	134.6	1.4205	134.37	134	135.42	-0.22696					75	28	4	0	0	0	0.28332	8	13342	13319;13325;13330;13335;13342;13349;13356;13363		69.628	33.181	1	185350			13542	8736	11033	11046	14893;14894;14895;14896;14897;14898;14899;14900	14897					-0.03322623038570782
GEPDPEFEAIL	11	Unmodified	_GEPDPEFEAIL_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	OvCa9_classI_Rep3	3	608.7897338867188	2	608.790244	1215.56593	0.77672	0.00047286	-0.58707	-0.0003574	0.18964	0.00011545	608.7896927819082	135.16	1.3782	134.05	133.72	135.1	-1.1076					76	27	4	0	0	0	0.20195	4	10937	10913;10917;10930;10937		79.713	18.741	1	189180			13543	8736	11033	11046	14901;14902;14903;14904	14904					-0.03322623038570782
GEPDPEFEAIL	11	Unmodified	_GEPDPEFEAIL_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	608.790771484375	2	608.790244	1215.56593	3.1879	0.0019407	-3.0866	-0.0018791	0.10128	6.1656E-05	608.7882379597531	135.57	1.5724	134.02	133.61	135.18	-1.5436					82	31	4	0	0	0	0.14417	3	13127	13104;13127;13167		87.696	25.589	1	243270			13544	8736	11033	11046	14905;14906;14907	14906					-0.03322623038570782
GEPEKLGQAL	10	Unmodified	_GEPEKLGQAL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OvCa99_classI_Rep5	1	521.2841186523438	2	521.282389	1040.55022	-0.8216	-0.00042829	-1.0117	-0.00052737	-1.8333	-0.00095565	521.2818876646198	67.676	1.2656	67.676	67.298	68.564	0					46	31	2	0	0	0	0.28422	1	6334	6334		82.75	15.257	1	18647000			13545	3119	11034	11047	14908	14908					0.031571352350511006
GEPEKLGQAL	10	Unmodified	_GEPEKLGQAL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OvCa9_classI_Rep2	2	521.2831420898438	2	521.282389	1040.55022	0.19439	0.00010133	-0.6665	-0.00034743	-0.47211	-0.0002461	521.2820109647391	70.008	2.4959	67.438	66.615	69.111	-2.5707					136	48	5	0	0	0	0.34811	6	5562	5562;5566;5572;5578;5583;5589		75.043	23.708	1	2039900			13546	3119	11034	11047	14909;14910;14911;14912;14913;14914	14909					0.031571352350511006
GEPEKLGQAL	10	Unmodified	_GEPEKLGQAL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.2833862304688	2	521.282389	1040.55022	-1.1175	-0.00058251	0.59209	0.00030865	-0.52537	-0.00027386	521.2827229081506	70.873	2.6683	67.416	67.008	69.676	-3.4563					119	54	3	0	0	0	0.12738	5	5377	5356;5365;5377;5389;5401		106.68	39.189	1	8738000			13547	3119	11034	11047	14915;14916;14917;14918;14919	14917					0.031571352350511006
GEPEKLGQAL	10	Unmodified	_GEPEKLGQAL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MATCH	OvCa9_classI_Rep3	3		2	521.282389	1040.55022	0.57766	0.00030112	-0.80409	-0.00041916	-0.22643	-0.00011803	521.2817095542187	70.445	0.79578	67.725	67.006	67.801	-2.7196	0.16131	-0.0010491	NaN	106.68	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13474			13548	3119	11034	11047							0.031571352350511006
GEPGFPLNAI	10	Unmodified	_GEPGFPLNAI_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF	ENSG00000111229|ENST00000228825|ARPC3;ENST00000467622.2_1_12:110874278-110874939:-|nuORF	ENSG00000111229|ENST00000228825|ARPC3	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7662048339844	2	507.766374	1013.5182	0.43978	0.0002233	-0.32354	-0.00016428	0.11624	5.9022E-05	507.76605298589374	131.19	1.6749	130.96	130.26	131.93	-0.22696					79	33	3	0	0	0	0.58067	1	12924	12924		44.377	0.26039	1	124560			13549	2813;12316	11035	11048	14920	14920					0.01197767551900597
GEPIANGMLL	10	Unmodified	_GEPIANGMLL_					0	0	0			REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	MULTI-MSMS	OvCa9_classI_Rep3	3	507.7667236328125	2	507.76806	1013.52157	-0.36325	-0.00018445	-2.974	-0.0015101	-3.3372	-0.0016945	507.76638761877894	131.88	1.6751	130.75	129.96	131.63	-1.1249					88	33	4	0	0	0	0.69073	1	10558	10558		31.53	0	1	127470	+		13550	16668	11036	11049	14921	14921					0.015346943342706254
GEPMNFVHL	9	Unmodified	_GEPMNFVHL_					0	0	0		ENSG00000197622|ENST00000357235|CDC42SE1;CDC42SE1|p.T40I|1|0.14|ENSG00000197622|chr1:151055062-151055062|G/A|missense_variant	ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	MULTI-MSMS	OvCa99_classI_Rep5	1	522.2539672851562	2	522.252577	1042.4906	-1.8685	-0.00097583	0.56766	0.00029646	-1.3008	-0.00067937	522.2528185724545	104.42	1.4221	104.42	104.06	105.49	0					72	32	3	0	0	0	0.11471	1	11688	11688		93.195	35.384	1	12446000			13551	8731	11037	11050	14922	14922					-0.028944589799721143
GEPPGRRGPW	10	Unmodified	_GEPPGRRGPW_					0	0	0			REV__nc|ENSG00000281720|Q9UBX2-2|DUX4	REV__nc|ENSG00000281720|Q9UBX2-2|DUX4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.8286743164062	2	554.785964	1107.55738	-0.51854	-0.00028768	-0.093324	-5.1775E-05	-0.61186	-0.00033945	554.7858671867986	65.737	0.77516	62.252	62.034	62.81	-3.4854					30	15	2	0	0	0	0.026956	1	4785	4785		34.173	16.808	1	135700	+		13552	23562	11038	11051	14923	14923					0.007899126261236233
GEPQMAAVII	10	Unmodified	_GEPQMAAVII_					0	0	0			REV__tr|A0A7D7A2G1|A0A7D7A2G1_9CLOTinorganicdiphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_16750PE=4SV=1	REV__tr|A0A7D7A2G1|A0A7D7A2G1_9CLOTinorganicdiphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_16750PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	514.7782592773438	2	514.775885	1027.53722	0.56345	0.00029005	2.9683	0.001528	3.5317	0.001818	514.7770230097722	140.4	0.66309	140.4	140.12	140.78	0					19	13	2	0	0	0	0.62299	1	16406	16406		39.253	9.4113	1	93961	+		13553	32536	11039	11052	14924	14924					0.024549808513029348
GEPQVQFKL	9	Unmodified	_GEPQVQFKL_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	OvCa9_classI_Rep2	2	523.2868041992188	2	523.287474	1044.5604	-0.092001	-4.8143E-05	-0.66472	-0.00034784	-0.75672	-0.00039598	523.2870336895712	94.827	1.3785	93.728	93.165	94.543	-1.0995					51	27	2	0	0	0	0.22621	3	8509	8503;8509;8514		71.877	13.096	1	501140			13554	4131	11040	11053	14925;14926;14927	14926					0.039897429602888224
GEPQVQFKL	9	Unmodified	_GEPQVQFKL_					0	0	0		ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	ENSG00000132341|ENST00000543796|RAN	MULTI-MSMS	OvCa9_classI_Rep3	3	523.2893676757812	2	523.287474	1044.5604	-0.90769	-0.00047498	0.24502	0.00012821	-0.66267	-0.00034677	523.287473398846	95.602	1.4917	93.774	93.13	94.621	-1.8286					54	29	2	0	0	0	0.16562	2	6248	6248;6260		82.241	15.811	1	653760			13555	4131	11040	11053	14928;14929	14928					0.039897429602888224
GEPTHDTDTL	10	Unmodified	_GEPTHDTDTL_					0	0	0		nc|ENSG00000138081|Q86XK2-6|FBXO11;ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11	nc|ENSG00000138081|Q86XK2-6|FBXO11	nc|ENSG00000138081|Q86XK2-6|FBXO11	MULTI-MSMS	OvCa99_classI_Rep5	1	543.2410278320312	2	543.240918	1084.46728	0.093325	5.0698E-05	-0.2377	-0.00012913	-0.14437	-7.843E-05	543.2407575035813	46.46	0.82639	46.46	46.112	46.938	0					40	18	4	0	0	0	0.37436	1	3281	3281		71.877	15.156	1	758330			13556	4656	11041	11054	14930	14930					-0.07157226283607088
GEPTQTKIL	9	Unmodified	_GEPTQTKIL_					0	0	0		nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;ENST00000551486.1_1_12:50598277-50615854:-|nuORF	nc|ENSG00000050405|Q9UHB6-2|LIMA1	nc|ENSG00000050405|Q9UHB6-2|LIMA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.7810974121094	2	493.779482	985.544411	-0.6596	-0.0003257	0.16657	8.2248E-05	-0.49303	-0.00024345	493.779465098626	65.75	1.3135	62.264	61.938	63.251	-3.4854					70	26	4	0	0	0	0.1944	1	4739	4739		77.318	3.0625	1	877510			13557	1180	11042	11055	14931	14931					0.05106036723384477
GEPTQTKIL	9	Unmodified	_GEPTQTKIL_					0	0	0		nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;ENST00000551486.1_1_12:50598277-50615854:-|nuORF	nc|ENSG00000050405|Q9UHB6-2|LIMA1	nc|ENSG00000050405|Q9UHB6-2|LIMA1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	493.779482	985.544411	1.0692	0.00052797	-0.96693	-0.00047745	0.1023	5.0516E-05	493.7788545390595	65.087	1.2776	62.362	61.864	63.142	-2.7245	0.048842	-0.00051237	NaN	77.318	44	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183330			13558	1180	11042	11055							0.05106036723384477
GEPVKHIVTD	10	Unmodified	_GEPVKHIVTD_					0	0	0		tr|A0A553SSG8|A0A553SSG8_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=celBPE=4SV=1	tr|A0A553SSG8|A0A553SSG8_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=celBPE=4SV=1	tr|A0A553SSG8|A0A553SSG8_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=celBPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.2877197265625	2	547.795663	1093.57677	1.1471	0.0006284	4.43	0.0024267	5.5771	0.0030551	547.7976612605399	131.06	0.52115	131.06	130.82	131.34	0					17	10	2	0	0	0	0.027028	1	15214	15214		24.519	0.99649	1	83772			13559	34374	11043	11056	14932	14932					0.03372824126381602
GEPVLLVLPV	10	Unmodified	_GEPVLLVLPV_					0	0	0			REV__ENST00000225964.9_1_17:48268227-48270392:-|nuORF	REV__ENST00000225964.9_1_17:48268227-48270392:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.7999877929688	2	518.326068	1034.63758	-1.3457	-0.00069749	-1.3268	-0.00068771	-2.6725	-0.0013852	518.3255778682108	84.943	0.19753	83.397	83.252	83.449	-1.5462					5	3	2	0	0	0	0.027084	1	7335	7335		17.365	6.4994	1	4752.1	+		13560	23765	11044	11057	14933	14933					0.12164961176608813
GEQAIRQIL	9	Unmodified	_GEQAIRQIL_					0	0	0		VCL-ADK|2|fusion;VCL|p.R832Efs*23|1|0.05|ENSG00000035403|chr10:74107288-74107288|C/-|frameshift_variant;VCL-ADK|1|fusion;VCL-ADK|4|fusion;nc|ENSG00000035403|P18206-2|VCL;VCL-ADK|13|fusion;ENSG00000035403|ENST00000211998|VCL	VCL-ADK|2|fusion	VCL-ADK|2|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	514.3003540039062	2	514.298373	1026.58219	0.63129	0.00032467	1.8723	0.00096294	2.5036	0.0012876	514.299085921615	81.101	0.96413	81.101	80.529	81.493	0					43	22	3	0	0	0	0.35694	1	8339	8339		56.434	3.4971	1	1576200			13561	1081	11045	11058	14934	14934					0.0699654770885445
GEQAIRQIL	9	Unmodified	_GEQAIRQIL_					0	0	0		VCL-ADK|2|fusion;VCL|p.R832Efs*23|1|0.05|ENSG00000035403|chr10:74107288-74107288|C/-|frameshift_variant;VCL-ADK|1|fusion;VCL-ADK|4|fusion;nc|ENSG00000035403|P18206-2|VCL;VCL-ADK|13|fusion;ENSG00000035403|ENST00000211998|VCL	VCL-ADK|2|fusion	VCL-ADK|2|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.298373	1026.58219	0.2873	0.00014776	-0.23658	-0.00012168	0.050719	2.6085E-05	514.298531680273	82.878	0.63658	81.279	80.958	81.594	-1.5988	0.028118	-0.00095685	NaN	56.434	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26196			13562	1081	11045	11058							0.0699654770885445
GEQAIRQIL	9	Unmodified	_GEQAIRQIL_					0	0	0		VCL-ADK|2|fusion;VCL|p.R832Efs*23|1|0.05|ENSG00000035403|chr10:74107288-74107288|C/-|frameshift_variant;VCL-ADK|1|fusion;VCL-ADK|4|fusion;nc|ENSG00000035403|P18206-2|VCL;VCL-ADK|13|fusion;ENSG00000035403|ENST00000211998|VCL	VCL-ADK|2|fusion	VCL-ADK|2|fusion	MULTI-MATCH	OvCa9_classI_Rep3	3		2	514.298373	1026.58219	-0.58928	-0.00030307	-2.4845	-0.0012778	-3.0738	-0.0015809	514.7983715368946	83.633	0.9339	81.372	80.766	81.7	-2.261	0.12138	-0.0032691	NaN	56.434	48	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75819			13563	1081	11045	11058							0.0699654770885445
GEQGVGKSTL	10	Unmodified	_GEQGVGKSTL_					0	0	0		ENSG00000164949|ENST00000297596|GEM;ENST00000521817.1_1_8:95272332-95274320:-|nuORF;ENST00000523660.1_1_8:95272332-95274501:-|nuORF	ENSG00000164949|ENST00000297596|GEM	ENSG00000164949|ENST00000297596|GEM	MULTI-MSMS	OvCa99_classI_Rep5	1	488.25897216796875	2	488.258914	974.503274	-0.79009	-0.00038577	2.588	0.0012636	1.7979	0.00087786	488.25910160091115	43.463	0.80916	43.463	43.143	43.952	0					37	18	3	0	0	0	0.38633	1	2866	2866		70.399	4.5954	1	1327600			13564	6505	11046	11059	14935	14935					0.01500275683918062
GEQLKADLL	9	Unmodified	_GEQLKADLL_					0	0	0		nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14	nc|ENSG00000105357|Q7Z406-5|MYH14	nc|ENSG00000105357|Q7Z406-5|MYH14	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.78106689453125	2	493.779482	985.544411	-0.6596	-0.0003257	0.16657	8.2248E-05	-0.49303	-0.00024345	493.779465098626	65.75	1.3135	62.264	61.938	63.251	-3.4854					70	26	4	0	0	0	0.21231	1	4747	4747		74.255	2.3776	1	877510			13565	2445	11047	11060	14936	14936					0.05106036723384477
GEQPQPASFVP	11	Unmodified	_GEQPQPASFVP_					0	0	0		nc|ENSG00000177752|Q8N8F6-4|YIPF7;nc|ENSG00000177752|Q8N8F6-5|YIPF7;nc|ENSG00000177752|Q8N8F6-2|YIPF7;ENSG00000177752|ENST00000415895|YIPF7	nc|ENSG00000177752|Q8N8F6-4|YIPF7	nc|ENSG00000177752|Q8N8F6-4|YIPF7	MULTI-MSMS	OvCa99_classI_Rep5	1	579.2846069335938	2	578.785296	1155.55604	2.305	0.0013341	-2.1873	-0.001266	0.1177	6.8121E-05	578.7838516129754	94.271	0.33926	94.271	94.051	94.39	0					17	7	3	0	0	0	0.69808	1	10248	10248		30.318	0.47618	1	1063000			13566	7710	11048	11061	14937	14937					-0.015517662533056864
GEQREPETL	9	Unmodified	_GEQREPETL_					0	0	0		nc|ENSG00000151553|Q5W0V3-2|FHIP2A;ENSG00000151553|ENST00000369248|FHIP2A	nc|ENSG00000151553|Q5W0V3-2|FHIP2A	nc|ENSG00000151553|Q5W0V3-2|FHIP2A	MSMS	OvCa99_classI_Rep5	1	529.7608642578125	2	529.759278	1057.504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.601	1	46.601	46.101	47.101	0								0	0	0	0.02826	1	3302	3302		109.48	48.506	1				13567	5563	11049	11062	14938	14938					-0.022449296670401964
GERCCHGG	8	Unmodified	_GERCCHGG_					0	0	0			REV__ENST00000584684.1_1_17:37873623-37876175:+|nuORF	REV__ENST00000584684.1_1_17:37873623-37876175:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	409.6583557128906	2	409.655247	817.295941	1.3407	0.00054923	1.7543	0.00071867	3.095	0.0012679	409.65609967744217	71.811	0.74474	71.811	71.589	72.333	0					33	17	3	0	0	0	0.73013	1	6968	6968		7.6903	2.6034	1	1252300	+		13568	27847	11050	11063	14939	14939					-0.12001533336763259
GERCCHGG	8	Unmodified	_GERCCHGG_					0	0	0			REV__ENST00000584684.1_1_17:37873623-37876175:+|nuORF	REV__ENST00000584684.1_1_17:37873623-37876175:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	409.655247	817.295941	1.3407	0.00054923	1.7543	0.00071867	3.095	0.0012679	409.65609967744217	71.811	0.74474	71.811	71.589	72.333	0	0	0	NaN	7.6903	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1252300	+		13569	27847	11050	11063							-0.12001533336763259
GERGKLKVIWP	11	Unmodified	_GERGKLKVIWP_					0	0	0		ENST00000409195.5_2_2:168108454-168115870:+|nuORF;nc|ENSG00000163092|A4UGR9-7|XIRP2;nc|ENSG00000163092|A4UGR9-5|XIRP2;nc|ENSG00000163092|A4UGR9-4|XIRP2;nc|ENSG00000163092|A4UGR9-6|XIRP2	ENST00000409195.5_2_2:168108454-168115870:+|nuORF	ENST00000409195.5_2_2:168108454-168115870:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8807983398438	2	641.885147	1281.75574	-4.0037	-0.0025699	-0.45506	-0.00029209	-4.4587	-0.002862	642.3862707583961	149.94	3.9275	149.71	147.52	151.45	-0.22696					225	78	5	0	0	0	0.72466	1	15226	15226		19.997	0.89325	1	222110			13570	11518	11051	11064	14940	14940					0.12613333485114708
GERIEEQVRL	10	Unmodified	_GERIEEQVRL_					0	0	0			REV__PTPRN|p.K369Rfs*17|1|0.03|ENSG00000054356|chr2:219301608-219301609|-/AAGAGTGAAACTCTGTC|frameshift_variant	REV__PTPRN|p.K369Rfs*17|1|0.03|ENSG00000054356|chr2:219301608-219301609|-/AAGAGTGAAACTCTGTC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	410.22747802734375	3	410.226326	1227.65715	-0.59158	-0.00024268	4.4763	0.0018363	3.8847	0.0015936	410.22807386978417	38.111	1.8292	35.402	35.124	36.953	-2.7097					84	36	4	0	0	0	0.74773	1	1789	1789		25.126	3.3456	1	218460	+		13571	29322	11052	11065	14941	14941					0.052426854494115105
GERRQRPK	8	Unmodified	_GERRQRPK_					0	0	0		nc|ENSG00000143409|Q8N5J2-2|MINDY1;nc|ENSG00000143409|Q8N5J2-4|MINDY1;ENSG00000143409|ENST00000683666|MINDY1;nc|ENSG00000143409|Q8N5J2-3|MINDY1	nc|ENSG00000143409|Q8N5J2-2|MINDY1	nc|ENSG00000143409|Q8N5J2-2|MINDY1	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.2760620117188	2	513.799406	1025.58426	0.42365	0.00021767	3.2209	0.0016549	3.6445	0.0018726	513.8004437137503	92.571	0.92191	91.403	91.235	92.157	-1.168					21	17	2	0	0	0	0.028476	1	8221	8221		11.511	6.2909	1	21533			13572	5052	11053	11066	14942	14942					0.0724902123731681
GERRRRRRHRR	11	Unmodified	_GERRRRRRHRR_					0	0	0			REV__ENST00000419807.5_3_2:44395715-44396385:+|nuORF	REV__ENST00000419807.5_3_2:44395715-44396385:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	530.9860229492188	3	530.988084	1589.94242	-6.6786	-0.0035463	2.3701	0.0012585	-4.3085	-0.0022878	530.9891908448743	163.98	1.3448	162.59	161.35	162.69	-1.3925					72	30	4	0	0	0	0.72557	2	14310	14310;14316		8.0344	2.0333	1	820760	+		13573	25587	11054	11067	14943;14944	14943					0.17104807936698307
GERRRRRRHRR	11	Unmodified	_GERRRRRRHRR_					0	0	0			REV__ENST00000419807.5_3_2:44395715-44396385:+|nuORF	REV__ENST00000419807.5_3_2:44395715-44396385:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	530.988084	1589.94242	-5.7853	-0.0030719	3.6185	0.0019214	-2.1668	-0.0011506	530.9895855659635	162.79	1.1121	162.57	161.53	162.64	-0.22696	0.013084	0.00086071	NaN	8.0344	49	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	421370	+		13574	25587	11054	11067							0.17104807936698307
GERRRRRRHRR	11	Unmodified	_GERRRRRRHRR_					0	0	0			REV__ENST00000419807.5_3_2:44395715-44396385:+|nuORF	REV__ENST00000419807.5_3_2:44395715-44396385:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	530.988084	1589.94242	-7.3872	-0.0039225	3.2366	0.0017186	-4.1506	-0.0022039	530.989590191017	164.14	0.56653	162.5	162.04	162.61	-1.6336	-0.049789	0.00025235	NaN	8.0344	35	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	565480	+		13575	25587	11054	11067							0.17104807936698307
GESAVGKSSL	10	Unmodified	_GESAVGKSSL_					0	0	0		nc|ENSG00000144566|P20339-2|RAB5A;ENSG00000144566|ENST00000273047|RAB5A;ENST00000476544.1_1_3:19992384-19992582:+|nuORF;ENST00000550013.1_1_17:40282343-40282577:-|nuORF;RAB5C|p.V38Cfs*85|1|0.06|ENSG00000108774|chr17:42130392-42130393|-/AGTGTTGTCGTCTGCAT|frameshift_variant;ENST00000546810.1_1_12:56367874-56383936:+|nuORF;nc|ENSG00000111540|P61020-2|RAB5B;ENSG00000111540|ENST00000360299|RAB5B;ENSG00000108774|ENST00000346213|RAB5C;nc|ENSG00000108774|P51148-2|RAB5C	nc|ENSG00000144566|P20339-2|RAB5A	nc|ENSG00000144566|P20339-2|RAB5A	MULTI-MSMS	OvCa99_classI_Rep5	1	467.745849609375	2	467.745639	933.476725	-1.2537	-0.00058641	0.73455	0.00034358	-0.51914	-0.00024282	467.7459750338252	43.845	0.82893	43.845	43.521	44.35	0					35	18	2	0	0	0	0.084482	1	2911	2911		117.53	40.208	1	6029000			13576	5160	11055	11068	14945	14945					0.007325867925828788
GESAVGKSSL	10	Unmodified	_GESAVGKSSL_					0	0	0		nc|ENSG00000144566|P20339-2|RAB5A;ENSG00000144566|ENST00000273047|RAB5A;ENST00000476544.1_1_3:19992384-19992582:+|nuORF;ENST00000550013.1_1_17:40282343-40282577:-|nuORF;RAB5C|p.V38Cfs*85|1|0.06|ENSG00000108774|chr17:42130392-42130393|-/AGTGTTGTCGTCTGCAT|frameshift_variant;ENST00000546810.1_1_12:56367874-56383936:+|nuORF;nc|ENSG00000111540|P61020-2|RAB5B;ENSG00000111540|ENST00000360299|RAB5B;ENSG00000108774|ENST00000346213|RAB5C;nc|ENSG00000108774|P51148-2|RAB5C	nc|ENSG00000144566|P20339-2|RAB5A	nc|ENSG00000144566|P20339-2|RAB5A	MSMS	OvCa9_classI_Rep4_	4	467.7470397949219	2	467.745639	933.476725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.356	1	45.249	44.749	45.749	-3.1077								0	0	0	0.043807	1	2661	2661		109.44	31.175	1				13577	5160	11055	11068	14946	14946					0.007325867925828788
GESAVGKSSL	10	Unmodified	_GESAVGKSSL_					0	0	0		nc|ENSG00000144566|P20339-2|RAB5A;ENSG00000144566|ENST00000273047|RAB5A;ENST00000476544.1_1_3:19992384-19992582:+|nuORF;ENST00000550013.1_1_17:40282343-40282577:-|nuORF;RAB5C|p.V38Cfs*85|1|0.06|ENSG00000108774|chr17:42130392-42130393|-/AGTGTTGTCGTCTGCAT|frameshift_variant;ENST00000546810.1_1_12:56367874-56383936:+|nuORF;nc|ENSG00000111540|P61020-2|RAB5B;ENSG00000111540|ENST00000360299|RAB5B;ENSG00000108774|ENST00000346213|RAB5C;nc|ENSG00000108774|P51148-2|RAB5C	nc|ENSG00000144566|P20339-2|RAB5A	nc|ENSG00000144566|P20339-2|RAB5A	MSMS	OvCa9_classI_Rep4_	4	467.7467956542969	2	467.745639	933.476725	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.467	1	45.36	44.86	45.86	-3.1077								0	0	0	0.14659	1	2674	2674		50.034	2.1179	1				13578	5160	11055	11068	14947	14947					0.007325867925828788
GESDDSILRL	10	Unmodified	_GESDDSILRL_					0	0	0		ENSG00000171858|ENST00000343986|RPS21;ENST00000370562.1_1_20:60963217-60963421:+|nuORF	ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	MULTI-MSMS	OvCa99_classI_Rep5	1	552.7816162109375	2	552.78021	1103.54587	1.5144	0.00083715	-0.51554	-0.00028498	0.9989	0.00055217	552.7799964255425	98.399	1.3258	98.399	98.121	99.447	0					110	31	6	0	0	0	0.03438	2	10876	10823;10876		134.77	49.406	1	84752000			13579	7240	11056	11069	14948;14949	14949					-0.0017637397852467984
GESEDLASRL	10	Unmodified	_GESEDLASRL_					0	0	0		GOLGA2|p.K864Rfs*49|1|0.05|ENSG00000167110|chr9:128257647-128257648|-/C|frameshift_variant;nc|ENSG00000167110|Q08379|GOLGA2;ENSG00000167110|ENST00000611957|GOLGA2	GOLGA2|p.K864Rfs*49|1|0.05|ENSG00000167110|chr9:128257647-128257648|-/C|frameshift_variant	GOLGA2|p.K864Rfs*49|1|0.05|ENSG00000167110|chr9:128257647-128257648|-/C|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	538.765869140625	2	538.76456	1075.51457	0.7251	0.00039066	-0.14833	-7.9913E-05	0.57677	0.00031074	538.7643984223967	74.434	0.74639	74.434	74.056	74.802	0					29	18	2	0	0	0	0.11648	1	7363	7363		109.44	37.561	1	3236600			13580	6757	11057	11070	14950	14950					-0.02016947012612036
GESEEHIEL	9	Unmodified	_GESEEHIEL_					0	0	0		ENST00000505896.5_1_5:49695109-49707239:-|nuORF;nc|ENSG00000170571|Q6PCB8-2|EMB;ENSG00000170571|ENST00000303221|EMB	ENST00000505896.5_1_5:49695109-49707239:-|nuORF	ENST00000505896.5_1_5:49695109-49707239:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	521.739013671875	2	521.738011	1041.46147	-0.63187	-0.00032967	1.591	0.00083008	0.95911	0.0005004	521.7385261077987	69.362	0.73382	69.362	69.106	69.84	0					45	17	4	0	0	0	0.11171	1	6594	6594		94.006	0	1	3787700			13581	7118	11058	11071	14951	14951					-0.05760324795278393
GESGGSMHTAL	11	Unmodified	_GESGGSMHTAL_					0	0	0		nc|ENSG00000130830|Q00013-3|MPP1;ENSG00000130830|ENST00000369534|MPP1;ENST00000471821.1_1_X:154019969-154033702:-|nuORF;ENST00000475943.5_1_X:154013074-154033702:-|nuORF	nc|ENSG00000130830|Q00013-3|MPP1	nc|ENSG00000130830|Q00013-3|MPP1	MULTI-MSMS	OvCa99_classI_Rep5	1	523.734130859375	2	523.732206	1045.44986	-1.2484	-0.00065384	1.0429	0.00054622	-0.20549	-0.00010762	523.7325761098228	49.847	0.91633	49.847	49.593	50.509	0					51	20	4	0	0	0	0.049847	1	3749	3749		143.89	74.259	1	3942400			13582	4021	11059	11072	14952	14952					-0.07104845090270828
GESGIGKTSL	10	Unmodified	_GESGIGKTSL_					0	0	0		tr|A0A7D7AF49|A0A7D7AF49_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04660PE=4SV=1	tr|A0A7D7AF49|A0A7D7AF49_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04660PE=4SV=1	tr|A0A7D7AF49|A0A7D7AF49_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04660PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.7549133300781	2	474.753464	947.492375	0.73959	0.00035112	-0.71021	-0.00033717	0.029378	1.3947E-05	474.75301071387935	56.751	1.12	53.406	53.171	54.291	-3.3449					62	21	4	0	0	0	0.0512	1	3646	3646		128.6	11.076	1	637610			13583	36250	11060	11073	14953	14953					0.01652873309626557
GESGIGKTSL	10	Unmodified	_GESGIGKTSL_					0	0	0		tr|A0A7D7AF49|A0A7D7AF49_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04660PE=4SV=1	tr|A0A7D7AF49|A0A7D7AF49_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04660PE=4SV=1	tr|A0A7D7AF49|A0A7D7AF49_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04660PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	474.753464	947.492375	-0.93042	-0.00044172	1.0206	0.00048453	0.090171	4.2809E-05	474.75380146777275	56.447	1.2896	53.643	53.225	54.515	-2.804	0.1187	0.0011301	NaN	128.6	54	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115690			13584	36250	11060	11073							0.01652873309626557
GESGIKVAVL	10	Unmodified	_GESGIKVAVL_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-MSMS	OvCa9_classI_Rep2	2	486.789306640625	2	486.78985	971.565146	1.9197	0.0009345	-2.049	-0.00099744	-0.1293	-6.2941E-05	486.7887808509708	89.264	1.3857	87.896	87.527	88.913	-1.3676					82	27	4	0	0	0	0.12738	6	7839	7834;7839;7846;7852;7859;7865		106.68	37.055	1	636360			13585	6407	11061	11074	14954;14955;14956;14957;14958;14959	14955					0.07822627103041668
GESGIKVAVL	10	Unmodified	_GESGIKVAVL_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-MSMS	OvCa9_classI_Rep3	3	486.791015625	2	486.78985	971.565146	-1.0393	-0.0005059	0.65613	0.0003194	-0.38313	-0.00018651	486.79011721031304	89.857	1.4345	87.777	87.439	88.873	-2.0805					87	27	5	0	0	0	0.048965	5	5554	5542;5548;5554;5560;5566		129.42	43.551	1	1234900			13586	6407	11061	11074	14960;14961;14962;14963;14964	14962					0.07822627103041668
GESGIKVAVL	10	Unmodified	_GESGIKVAVL_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.7911071777344	2	486.78985	971.565146	0.19221	9.3564E-05	-0.41888	-0.00020391	-0.22668	-0.00011034	486.7895650092993	90.351	1.3286	87.776	87.501	88.829	-2.575					79	25	4	0	0	0	0.12738	3	7782	7770;7782;7794		106.68	26.97	1	1072900			13587	6407	11061	11074	14965;14966;14967	14966					0.07822627103041668
GESGKSTIV	9	Unmodified	_GESGKSTIV_					0	0	0		DLGAP1-GNAS|20|fusion;DLGAP1-GNAS|17|fusion;DLGAP1-GNAS|18|fusion;DLGAP1-GNAS|19|fusion;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;DLGAP1-GNAS|21|fusion;DLGAP1-GNAS|14|fusion;DLGAP1-GNAS|15|fusion;ENSG00000087460|ENST00000371085|GNAS;DLGAP1-GNAS|23|fusion;SETD3-GNAS|1|fusion;SETD3-GNAS|4|fusion;DLGAP1-GNAS|3|fusion;SETD3-GNAS|2|fusion;SETD3-GNAS|3|fusion;nc|ENSG00000087460|P63092-4|GNAS;CADM1-GNAS|4|fusion;DLGAP1-GNAS|24|fusion;DLGAP1-GNAS|11|fusion;DLGAP1-GNAS|2|fusion;nc|ENSG00000087460|P63092-2|GNAS;DLGAP1-GNAS|10|fusion;DLGAP1-GNAS|13|fusion;DLGAP1-GNAS|16|fusion;DLGAP1-GNAS|1|fusion;DLGAP1-GNAS|4|fusion;DLGAP1-GNAS|7|fusion;DLGAP1-GNAS|9|fusion;DLGAP1-GNAS|6|fusion;DLGAP1-GNAS|12|fusion;DLGAP1-GNAS|5|fusion;DLGAP1-GNAS|8|fusion;DLGAP1-GNAS|22|fusion;CADM1-GNAS|1|fusion;SDCCAG8-GNAS|2|fusion;nc|ENSG00000087460|P63092-3|GNAS;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;SDCCAG8-GNAS|4|fusion;SDCCAG8-GNAS|1|fusion;CADM1-GNAS|2|fusion;CADM1-GNAS|3|fusion;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;SDCCAG8-GNAS|3|fusion;GNAS|p.V117Rfs*23|1|0.06|ENSG00000087460|chr20:58903701-58903702|-/C|frameshift_variant;ENST00000493744.5_1_20:57416812-57475007:+|nuORF;ENST00000491348.5_1_20:57416812-57475007:+|nuORF;ENST00000464960.5_1_20:57463863-57475007:+|nuORF;ENST00000484504.5_1_20:57464299-57475007:+|nuORF;ENST00000371098.6_1_20:57415898-57475007:+|nuORF;GNAI2|p.D273Pfs*3|1|0.15|ENSG00000114353|chr3:50257030-50257031|GA/-|frameshift_variant;ENSG00000114349|ENST00000232461|GNAT1;nc|ENSG00000114353|P04899-3|GNAI2;nc|ENSG00000114353|P04899-5|GNAI2;nc|ENSG00000114353|P04899-2|GNAI2;ENSG00000087258|ENST00000262493|GNAO1;nc|ENSG00000134183|P19087|GNAT2;nc|ENSG00000087258|P09471-2|GNAO1;ENSG00000114353|ENST00000313601|GNAI2;MRPS27-GNAI2|1|fusion;nc|ENSG00000114353|P04899-4|GNAI2;GNAT1|p.K47Q|1|0.24|ENSG00000114349|chr3:50193165-50193165|A/C|missense_variant;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS;VTCN1-GNAI3|1|fusion;ENSG00000214415|ENST00000398291|GNAT3;ENSG00000127955|ENST00000649796|GNAI1;ENSG00000065135|ENST00000369851|GNAI3;ENSG00000141404|ENST00000334049|GNAL;nc|ENSG00000141404|P38405|GNAL	DLGAP1-GNAS|20|fusion;nc|ENSG00000087460|Q5JWF2-2|GNAS;VTCN1-GNAI3|1|fusion;ENSG00000141404|ENST00000334049|GNAL	DLGAP1-GNAS|20|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	439.23516845703125	2	439.234907	876.455261	0.5819	0.00025559	-0.54559	-0.00023964	0.036311	1.5949E-05	439.23466179166536	38.373	0.50471	38.373	38.114	38.619	0					25	10	4	0	0	0	0.3249	1	2179	2179		60.118	14.146	1	232030			13588	739;14909;1315;4909	11062	11075	14968	14968					0.012092017638678954
GESGLGKSTL	10	Unmodified	_GESGLGKSTL_					0	0	0		ENSG00000122545|ENST00000350320|SEPTIN7;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENST00000425198.1_1_7:35872473-35938044:+|nuORF;ENST00000584488.5_1_17:56598198-56606616:-|nuORF;nc|ENSG00000108387|O43236-4|SEPTIN4;nc|ENSG00000108387|O43236|SEPTIN4;nc|ENSG00000108387|O43236-3|SEPTIN4;ENST00000577440.5_1_17:56598198-56609324:-|nuORF;nc|ENSG00000108387|O43236-2|SEPTIN4;nc|ENSG00000108387|O43236-5|SEPTIN4;ENST00000484740.1_1_2:242255375-242274650:+|nuORF;nc|ENSG00000108387|O43236-6|SEPTIN4;ENST00000585170.1_1_17:56603011-56603617:-|nuORF;ENST00000494824.5_1_2:242255375-242275396:+|nuORF;ENSG00000108387|ENST00000672673|SEPTIN4;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000366210.2_1_2:242263647-242276275:+|nuORF;ENST00000467971.5_1_2:242255375-242276932:+|nuORF;ENST00000563743.1_1_16:30393079-30393866:-|nuORF;nc|ENSG00000180096|Q8WYJ6-2|SEPTIN1;ENST00000563957.6_1_16:30392598-30394125:-|nuORF;ENSG00000180096|ENST00000321367|SEPTIN1;ENSG00000184702|ENST00000455784|SEPTIN5;nc|ENSG00000284874|Q99719-2|SEPTIN5;ENST00000477238.1_1_22:19707079-19707537:+|nuORF	ENSG00000122545|ENST00000350320|SEPTIN7;ENSG00000168385|ENST00000391971|SEPTIN2;ENST00000563743.1_1_16:30393079-30393866:-|nuORF;ENSG00000184702|ENST00000455784|SEPTIN5	ENSG00000168385|ENST00000391971|SEPTIN2	MULTI-MSMS	OvCa99_classI_Rep5	1	474.7551574707031	2	474.753464	947.492375	0.29288	0.00013905	-0.62381	-0.00029616	-0.33093	-0.00015711	474.75311324614233	52.687	0.82587	52.687	52.434	53.26	0					54	18	4	0	0	0	0.095035	2	4133	4133;4156		114.86	15.845	1	7076900			13589	6897;3539;8185;7855	11063	11076	14969;14970	14969					0.01652873309626557
GESGLGKSTL	10	Unmodified	_GESGLGKSTL_					0	0	0		ENSG00000122545|ENST00000350320|SEPTIN7;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENST00000425198.1_1_7:35872473-35938044:+|nuORF;ENST00000584488.5_1_17:56598198-56606616:-|nuORF;nc|ENSG00000108387|O43236-4|SEPTIN4;nc|ENSG00000108387|O43236|SEPTIN4;nc|ENSG00000108387|O43236-3|SEPTIN4;ENST00000577440.5_1_17:56598198-56609324:-|nuORF;nc|ENSG00000108387|O43236-2|SEPTIN4;nc|ENSG00000108387|O43236-5|SEPTIN4;ENST00000484740.1_1_2:242255375-242274650:+|nuORF;nc|ENSG00000108387|O43236-6|SEPTIN4;ENST00000585170.1_1_17:56603011-56603617:-|nuORF;ENST00000494824.5_1_2:242255375-242275396:+|nuORF;ENSG00000108387|ENST00000672673|SEPTIN4;ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000366210.2_1_2:242263647-242276275:+|nuORF;ENST00000467971.5_1_2:242255375-242276932:+|nuORF;ENST00000563743.1_1_16:30393079-30393866:-|nuORF;nc|ENSG00000180096|Q8WYJ6-2|SEPTIN1;ENST00000563957.6_1_16:30392598-30394125:-|nuORF;ENSG00000180096|ENST00000321367|SEPTIN1;ENSG00000184702|ENST00000455784|SEPTIN5;nc|ENSG00000284874|Q99719-2|SEPTIN5;ENST00000477238.1_1_22:19707079-19707537:+|nuORF	ENSG00000122545|ENST00000350320|SEPTIN7;ENSG00000168385|ENST00000391971|SEPTIN2;ENST00000563743.1_1_16:30393079-30393866:-|nuORF;ENSG00000184702|ENST00000455784|SEPTIN5	ENSG00000168385|ENST00000391971|SEPTIN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.7549743652344	2	474.753464	947.492375	0.73959	0.00035112	-0.71021	-0.00033717	0.029378	1.3947E-05	474.75301071387935	56.751	1.12	53.406	53.171	54.291	-3.3449					62	21	4	0	0	0	0.1266	1	3656	3656		106.88	5.4204	1	637610			13590	6897;3539;8185;7855	11063	11076	14971	14971					0.01652873309626557
GESHPPLLVF	10	Unmodified	_GESHPPLLVF_					0	0	0			REV__ENST00000598632.5_1_19:50354098-50358367:+|nuORF	REV__ENST00000598632.5_1_19:50354098-50358367:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	548.2957153320312	2	548.295299	1094.57605	-1.4493	-0.00079464	1.5915	0.0008726	0.14219	7.7962E-05	548.2961982412694	34.285	4.3001	31.575	31.119	35.419	-2.7097					197	86	6	0	0	0	0.56767	1	1497	1497		45.952	3.5558	1	2359300	+		13591	28012	11064	11077	14972	14972					0.03254029477329823
GESHVSGTTTL	11	Unmodified	_GESHVSGTTTL_					0	0	0		nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22;ENST00000478443.1_1_17:20910195-20914666:-|nuORF	nc|ENSG00000124422|Q9UPT9-2|USP22	nc|ENSG00000124422|Q9UPT9-2|USP22	MULTI-MSMS	OvCa99_classI_Rep5	1	544.764892578125	2	544.76456	1087.51457	-0.45871	-0.00024989	0.39573	0.00021558	-0.062985	-3.4312E-05	544.7650297725324	47.962	0.73145	47.962	47.724	48.455	0					49	16	4	0	0	0	0.068793	2	3485	3485;3509		104.06	18.732	1	12220000			13592	3649	11065	11078	14973;14974	14973					-0.025689470126280867
GESHVSGTTTL	11	Unmodified	_GESHVSGTTTL_					0	0	0		nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22;ENST00000478443.1_1_17:20910195-20914666:-|nuORF	nc|ENSG00000124422|Q9UPT9-2|USP22	nc|ENSG00000124422|Q9UPT9-2|USP22	MULTI-MSMS	OvCa9_classI_Rep2	2	544.763916015625	2	544.76456	1087.51457	-1.4706	-0.00080111	1.0991	0.00059876	-0.37144	-0.00020235	544.7650611087879	51.984	1.5814	49.171	48.799	50.38	-2.8129					70	31	3	0	0	0	0.11855	3	3441	3441;3447;3453		93.143	26.394	1	590080			13593	3649	11065	11078	14975;14976;14977	14975					-0.025689470126280867
GESHVSGTTTL	11	Unmodified	_GESHVSGTTTL_					0	0	0		nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22;ENST00000478443.1_1_17:20910195-20914666:-|nuORF	nc|ENSG00000124422|Q9UPT9-2|USP22	nc|ENSG00000124422|Q9UPT9-2|USP22	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.7647705078125	2	544.76456	1087.51457	-0.80676	-0.00043949	0.11868	6.4654E-05	-0.68807	-0.00037484	544.7645697191853	52.127	1.8133	48.919	48.641	50.454	-3.208					102	35	4	0	0	0	0.055405	5	3115	3095;3103;3115;3127;3142		112.41	30.17	1	3224700			13594	3649	11065	11078	14978;14979;14980;14981;14982	14980					-0.025689470126280867
GESKDYAL	8	Unmodified	_GESKDYAL_					0	0	0		nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL;nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-4|SVIL	nc|ENSG00000197321|O95425-4|SVIL	MULTI-MSMS	OvCa99_classI_Rep5	1	441.7151184082031	2	441.713808	881.413062	0.35081	0.00015496	-0.069655	-3.0768E-05	0.28115	0.00012419	441.71364588733354	50.307	0.78868	50.307	50.031	50.819	0					41	17	3	0	0	0	0.45246	2	3827	3805;3827		82.305	24.494	1	2254300			13595	8700	11066	11079	14983;14984	14984					-0.03238773644534376
GESNDGWMFL	10	Unmodified	_GESNDGWMFL_					0	0	0			REV__ENST00000470183.1_1_X:38176512-38178196:-|nuORF	REV__ENST00000470183.1_1_X:38176512-38178196:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	578.244140625	2	578.242406	1154.47026	0.3341	0.00019319	3.6211	0.0020939	3.9552	0.0022871	578.244375188498	159.91	0.69296	159.91	159.66	160.35	0					27	13	3	0	0	0	0.59317	1	18754	18754		42.864	3.6114	1	76058	+		13596	20473	11067	11080	14985	14985					-0.10079674430448904
GESNQRQL	8	Unmodified	_GESNQRQL_					0	0	0			REV__ENSG00000116285|ENST00000377482|ERRFI1	REV__ENSG00000116285|ENST00000377482|ERRFI1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.75335693359375	2	466.23323	930.451907	-0.19825	-9.243E-05	-0.25366	-0.00011827	-0.45191	-0.0002107	466.23329847846975	46.897	0.90912	43.825	43.707	44.616	-3.0724					27	17	3	0	0	0	0.028476	1	2570	2570		57.811	19.005	1	48756	+		13597	18298	11068	11081	14986	14986					-0.01610048290137911
GESNQRQL	8	Unmodified	_GESNQRQL_					0	0	0			REV__ENSG00000116285|ENST00000377482|ERRFI1	REV__ENSG00000116285|ENST00000377482|ERRFI1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	466.23323	930.451907	-0.51081	-0.00023816	-1.9709	-0.00091889	-2.4817	-0.001157	466.23223766702705	46.696	0.29828	43.987	43.844	44.142	-2.7097	0.080943	-0.00044377	NaN	57.811	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8563.4	+		13598	18298	11068	11081							-0.01610048290137911
GESPQARAL	9	Unmodified	_GESPQARAL_					0	0	0		VCL-ADK|2|fusion;VCL|p.R832Efs*23|1|0.05|ENSG00000035403|chr10:74107288-74107288|C/-|frameshift_variant;VCL-ADK|1|fusion;VCL-ADK|4|fusion;nc|ENSG00000035403|P18206-2|VCL;VCL-ADK|13|fusion;ENSG00000035403|ENST00000211998|VCL	VCL-ADK|2|fusion	VCL-ADK|2|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	464.74542236328125	2	464.745973	927.477394	-1.0582	-0.0004918	0.39498	0.00018357	-0.66324	-0.00030824	464.7460013942417	44.075	0.61675	44.075	43.823	44.44	0					30	13	4	0	0	0	0.22621	1	2964	2964		71.877	18.526	1	711730			13599	1081	11069	11082	14987	14987					0.010754262322620889
GESPVPHTVL	10	Unmodified	_GESPVPHTVL_					0	0	0		ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-7|AGRN	ENSG00000188157|ENST00000379370|AGRN	ENSG00000188157|ENST00000379370|AGRN	MULTI-MSMS	OvCa9_classI_Rep2	2	518.2760009765625	2	518.277106	1034.53966	0.28968	0.00015014	-0.96712	-0.00050124	-0.67744	-0.0003511	518.2764599853043	78.78	1.1069	77.04	76.406	77.513	-1.7398					39	21	2	0	0	0	0.28845	1	6607	6607		82.241	31.048	1	262030			13600	8454	11070	11083	14988	14988					0.023771525806068894
GESPVPHTVL	10	Unmodified	_GESPVPHTVL_					0	0	0		ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-7|AGRN	ENSG00000188157|ENST00000379370|AGRN	ENSG00000188157|ENST00000379370|AGRN	MULTI-MSMS	OvCa9_classI_Rep3	3	518.2780151367188	2	518.277106	1034.53966	0.39663	0.00020556	-0.67655	-0.00035064	-0.27992	-0.00014508	518.2766474904062	78.973	1.1987	76.634	76.213	77.412	-2.3399					57	23	3	0	0	0	0.20801	5	4251	4232;4238;4244;4251;4256		93.195	37.691	1	786320			13601	8454	11070	11083	14989;14990;14991;14992;14993	14992					0.023771525806068894
GESPVPHTVL	10	Unmodified	_GESPVPHTVL_					0	0	0		ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-7|AGRN	ENSG00000188157|ENST00000379370|AGRN	ENSG00000188157|ENST00000379370|AGRN	MULTI-MATCH	OvCa99_classI_Rep5	1		2	518.277106	1034.53966	1.678	0.00086966	-1.6996	-0.00088088	-0.021648	-1.122E-05	518.7787148993673	76.62	0.39793	76.62	76.443	76.841	0	-0.055603	-0.001036	NaN	93.195	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	619720			13602	8454	11070	11083							0.023771525806068894
GESPVPHTVL	10	Unmodified	_GESPVPHTVL_					0	0	0		ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-7|AGRN	ENSG00000188157|ENST00000379370|AGRN	ENSG00000188157|ENST00000379370|AGRN	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	518.277106	1034.53966	-0.68839	-0.00035677	-0.6405	-0.00033196	-1.3289	-0.00068873	518.2768888985702	79.525	1.2551	76.774	76.514	77.769	-2.7514	0.098018	6.1881E-05	NaN	93.195	45	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	772620			13603	8454	11070	11083							0.023771525806068894
GESRKIIV	8	Unmodified	_GESRKIIV_					0	0	0			REV__tr|A0A553SSW5|A0A553SSW5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03830PE=4SV=1	REV__tr|A0A553SSW5|A0A553SSW5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03830PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	452.26080322265625	2	451.276909	900.539266	0.59128	0.00026683	-0.071122	-3.2096E-05	0.52016	0.00023474	451.2767024888027	45.267	0.33982	45.267	45.114	45.454	0					14	7	3	0	0	0	0.028476	1	3114	3114		17.365	9.6747	1	140640	+		13604	30888	11071	11084	14994	14994					0.08501777651429165
GESSGKNVTL	10	Unmodified	_GESSGKNVTL_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000561775.5_1_15:66795189-66797161:-|nuORF;ENST00000561554.5_1_15:66795666-66797161:-|nuORF;ENST00000567229.5_1_15:66795359-66797161:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF;RPL4-KIAA0317|1|fusion	ENSG00000174444|ENST00000307961|RPL4;ENST00000566622.5_1_15:66794044-66797161:-|nuORF;RPL4-KIAA0317|1|fusion	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	OvCa99_classI_Rep5	1	496.2565002441406	2	496.256371	990.498189	-1.4424	-0.00071578	0.38002	0.00018859	-1.0623	-0.0005272	496.25656256755286	43.93	0.56822	43.93	43.737	44.305	0					42	12	6	0	0	0	0.065922	2	2945	2920;2945		123.21	23.833	1	5514600			13605	7465;13849;32790	11072	11085	14995;14996	14996					0.0025597182128649365
GESSGKNVTL	10	Unmodified	_GESSGKNVTL_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000561775.5_1_15:66795189-66797161:-|nuORF;ENST00000561554.5_1_15:66795666-66797161:-|nuORF;ENST00000567229.5_1_15:66795359-66797161:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF;RPL4-KIAA0317|1|fusion	ENSG00000174444|ENST00000307961|RPL4;ENST00000566622.5_1_15:66794044-66797161:-|nuORF;RPL4-KIAA0317|1|fusion	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.2579040527344	2	496.256371	990.498189	-1.1503	-0.00057084	1.904	0.00094487	0.75371	0.00037403	496.257659816652	48.722	1.9634	45.615	44.838	46.801	-3.1077					80	37	3	0	0	0	0.25842	3	2698	2698;2708;2735		85.862	9.0152	1	653910			13606	7465;13849;32790	11072	11085	14997;14998;14999	14997					0.0025597182128649365
GESSGKNVTL	10	Unmodified	_GESSGKNVTL_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000561775.5_1_15:66795189-66797161:-|nuORF;ENST00000561554.5_1_15:66795666-66797161:-|nuORF;ENST00000567229.5_1_15:66795359-66797161:-|nuORF;ENST00000566624.5_1_15:66794944-66797161:-|nuORF;ENST00000564439.5_1_15:66793756-66797161:-|nuORF;ENST00000566039.5_1_15:66793707-66797161:-|nuORF;ENST00000566622.5_1_15:66794044-66797161:-|nuORF;RPL4-KIAA0317|1|fusion	ENSG00000174444|ENST00000307961|RPL4;ENST00000566622.5_1_15:66794044-66797161:-|nuORF;RPL4-KIAA0317|1|fusion	ENSG00000174444|ENST00000307961|RPL4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	496.256371	990.498189	-0.67677	-0.00033585	1.1873	0.00058922	0.51056	0.00025337	496.25680336381583	48.511	1.243	45.751	45.23	46.473	-2.7603	0.067861	-0.00017483	NaN	85.862	48	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152920			13607	7465;13849;32790	11072	11085							0.0025597182128649365
GESSLRNFTM	10	Oxidation (M)	_GESSLRNFTM(Oxidation (M))_		GESSLRNFTM(1)		GESSLRNFTM(140)	0	0	1		ENSG00000153147|ENST00000283131|SMARCA5;ENST00000515531.1_1_4:144464789-144465131:+|nuORF	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.2672729492188	2	579.266413	1156.51827	0.46763	0.00027088	-0.75795	-0.00043905	-0.29031	-0.00016817	579.2658506740873	67.452	1.4735	63.962	63.541	65.014	-3.4902					62	29	3	0	0	0	0.026604	3	4952	4942;4952;4966		140.11	46.106	1	558140			13608	5663	11073	11086	15000;15001;15002	15001		183			-0.053726005104408614
GESSLRNFTM	10	Oxidation (M)	_GESSLRNFTM(Oxidation (M))_					0	0	1		ENSG00000153147|ENST00000283131|SMARCA5;ENST00000515531.1_1_4:144464789-144465131:+|nuORF	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	579.266413	1156.51827	-0.33587	-0.00019456	0.43907	0.00025434	0.1032	5.978E-05	579.2665112510718	66.73	1.685	64.034	63.567	65.252	-2.6958	0.036004	0.0005741	NaN	140.11	62	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98370			13609	5663	11073	11086				183			-0.053726005104408614
GESSLRNFTM	10	Unmodified	_GESSLRNFTM_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5;ENST00000515531.1_1_4:144464789-144465131:+|nuORF	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	OvCa9_classI_Rep4_	4	571.2703857421875	2	571.268955	1140.52336	0.58524	0.00033433	-0.92589	-0.00052893	-0.34065	-0.0001946	571.2681456546809	84.211	0.98122	81.548	81.314	82.295	-2.6629					46	20	4	0	0	0	0.13794	1	7041	7041		104.01	43.042	1	300700			13610	5663	11073	11087	15003	15003					-0.04128296647809293
GESTDALKL	9	Unmodified	_GESTDALKL_					0	0	0		ENSG00000196954|ENST00000444739|CASP4;nc|ENSG00000196954|P49662-5|CASP4;ENST00000531546.1_1_11:104822523-104839261:-|nuORF;nc|ENSG00000196954|P49662-4|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4	ENSG00000196954|ENST00000444739|CASP4	ENSG00000196954|ENST00000444739|CASP4	MULTI-MSMS	OvCa99_classI_Rep5	1	467.2490234375	2	467.248015	932.481476	0.4734	0.0002212	0.091565	4.2784E-05	0.56497	0.00026398	467.2477956185904	72.628	0.73915	72.628	72.374	73.113	0					69	18	6	0	0	0	0.0094524	2	7069	7069;7096		171.38	28.278	1	10539000			13611	8664	11074	11088	15004;15005	15004					0.012534709353303697
GESTDALKL	9	Unmodified	_GESTDALKL_					0	0	0		ENSG00000196954|ENST00000444739|CASP4;nc|ENSG00000196954|P49662-5|CASP4;ENST00000531546.1_1_11:104822523-104839261:-|nuORF;nc|ENSG00000196954|P49662-4|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4	ENSG00000196954|ENST00000444739|CASP4	ENSG00000196954|ENST00000444739|CASP4	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.2494201660156	2	467.248015	932.481476	-0.027138	-1.268E-05	-0.13789	-6.4428E-05	-0.16503	-7.7108E-05	467.2478574812641	76.297	1.5255	73.358	73.033	74.558	-2.9389					66	31	3	0	0	0	0.059253	1	6050	6050		113.41	10.638	1	515080			13612	8664	11074	11088	15006	15006					0.012534709353303697
GESTDALKL	9	Unmodified	_GESTDALKL_					0	0	0		ENSG00000196954|ENST00000444739|CASP4;nc|ENSG00000196954|P49662-5|CASP4;ENST00000531546.1_1_11:104822523-104839261:-|nuORF;nc|ENSG00000196954|P49662-4|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF;nc|ENSG00000196954|P49662-2|CASP4	ENSG00000196954|ENST00000444739|CASP4	ENSG00000196954|ENST00000444739|CASP4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	467.248015	932.481476	-0.65382	-0.0003055	0.20394	9.5289E-05	-0.44989	-0.00021021	467.24801354392326	75.451	1.713	73.597	73.015	74.728	-1.854	0.11992	0.00013976	NaN	113.41	53	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121140			13613	8664	11074	11088							0.012534709353303697
GESTELMTHL	10	Unmodified	_GESTELMTHL_					0	0	0		PDLIM4|p.P136Hfs*24|1|0.26|ENSG00000131435|chr5:132270993-132270993|C/-|frameshift_variant;nc|ENSG00000131435|P50479-2|PDLIM4;ENSG00000131435|ENST00000253754|PDLIM4	PDLIM4|p.P136Hfs*24|1|0.26|ENSG00000131435|chr5:132270993-132270993|C/-|frameshift_variant	PDLIM4|p.P136Hfs*24|1|0.26|ENSG00000131435|chr5:132270993-132270993|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	559.264892578125	2	559.263339	1116.51212	3.0569	0.0017096	0.31414	0.00017569	3.371	0.0018853	559.2633628043859	86.365	0.64723	86.365	86.073	86.72	0					38	15	4	0	0	0	0.034256	1	9108	9108		134.81	71.277	1	2987000			13614	4064	11075	11089	15007	15007					-0.041471187419119815
GESVLKLTF	9	Unmodified	_GESVLKLTF_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-MSMS	OvCa9_classI_Rep3	3	497.2834777832031	2	497.2844	992.554247	1.4139	0.00070312	0.50144	0.00024936	1.9154	0.00095248	497.28359264950006	111.79	1.8717	110.68	110.2	112.07	-1.1038					75	37	5	0	0	0	0.084918	4	8120	8120;8125;8131;8138		101.25	24.478	1	330780			13615	2509	11076	11090	15008;15009;15010;15011	15008					0.057672247287428036
GESVLKLTF	9	Unmodified	_GESVLKLTF_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.2835998535156	2	497.2844	992.554247	0.10307	5.1253E-05	3.3101	0.0016461	3.4132	0.0016973	497.2840325212611	112.3	1.9661	110.78	110.21	112.18	-1.5111					120	38	5	0	0	0	0.051592	4	10348	10348;10361;10376;10403		117.81	32.896	1	403480			13616	2509	11076	11090	15012;15013;15014;15015	15012					0.057672247287428036
GESVLKLTF	9	Unmodified	_GESVLKLTF_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	497.2844	992.554247	1.9809	0.00098505	-0.15342	-7.6292E-05	1.8274	0.00090876	497.2843370031057	110.75	0.44327	110.75	110.54	110.98	0	0.014523	-0.001144	NaN	117.81	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327450			13617	2509	11076	11090							0.057672247287428036
GETAFAFHL	9	Unmodified	_GETAFAFHL_					0	0	0		ENSG00000181625|ENST00000330181|SLX1B;ENSG00000132207|ENST00000251303|SLX1A;ENST00000565219.1_1_16:29466524-29469442:+|nuORF;SLX1B-FOXRED1|1|fusion	ENSG00000181625|ENST00000330181|SLX1B	ENSG00000181625|ENST00000330181|SLX1B	MULTI-MSMS	OvCa99_classI_Rep5	1	496.7464599609375	2	496.745442	991.476331	1.8153	0.00090172	0.06808	3.3818E-05	1.8833	0.00093554	496.7453234347648	112.79	0.44894	112.79	112.57	113.02	0					23	9	3	0	0	0	0.17908	1	12848	12848		79.939	29.915	1	397490			13618	4118	11077	11091	15016	15016					-0.019747881366356523
GETAFAFHL	9	Unmodified	_GETAFAFHL_					0	0	0		ENSG00000181625|ENST00000330181|SLX1B;ENSG00000132207|ENST00000251303|SLX1A;ENST00000565219.1_1_16:29466524-29469442:+|nuORF;SLX1B-FOXRED1|1|fusion	ENSG00000181625|ENST00000330181|SLX1B	ENSG00000181625|ENST00000330181|SLX1B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	496.745442	991.476331	0.72815	0.0003617	-0.97699	-0.00048532	-0.24884	-0.00012361	496.74474458362135	112.82	0.88792	112.7	112.43	113.31	-0.12174	0.073228	-0.00019515	NaN	79.939	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64312			13619	4118	11077	11091							-0.019747881366356523
GETAFAFHL	9	Unmodified	_GETAFAFHL_					0	0	0		ENSG00000181625|ENST00000330181|SLX1B;ENSG00000132207|ENST00000251303|SLX1A;ENST00000565219.1_1_16:29466524-29469442:+|nuORF;SLX1B-FOXRED1|1|fusion	ENSG00000181625|ENST00000330181|SLX1B	ENSG00000181625|ENST00000330181|SLX1B	MULTI-MATCH	OvCa9_classI_Rep3	3		2	496.745442	991.476331	0.6427	0.00031926	-1.081	-0.00053696	-0.43825	-0.0002177	496.74482488892994	113.59	0.781	112.52	112.25	113.03	-1.0753	-0.11062	-0.00029844	NaN	79.939	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63958			13620	4118	11077	11091							-0.019747881366356523
GETAFAFHL	9	Unmodified	_GETAFAFHL_					0	0	0		ENSG00000181625|ENST00000330181|SLX1B;ENSG00000132207|ENST00000251303|SLX1A;ENST00000565219.1_1_16:29466524-29469442:+|nuORF;SLX1B-FOXRED1|1|fusion	ENSG00000181625|ENST00000330181|SLX1B	ENSG00000181625|ENST00000330181|SLX1B	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	496.745442	991.476331	0.5234	0.00026	-0.78917	-0.00039202	-0.26577	-0.00013202	496.74495798939495	113.95	0.86261	112.5	112.29	113.15	-1.4461	-0.12227	-8.5566E-06	NaN	79.939	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79673			13621	4118	11077	11091							-0.019747881366356523
GETEESEKL	9	Unmodified	_GETEESEKL_					0	0	0		nc|ENSG00000125686|Q15648-3|MED1;ENSG00000125686|ENST00000300651|MED1	nc|ENSG00000125686|Q15648-3|MED1	nc|ENSG00000125686|Q15648-3|MED1	MULTI-MSMS	OvCa99_classI_Rep5	1	511.2377014160156	2	511.237844	1020.46113	-0.15328	-7.836E-05	0.31564	0.00016137	0.16237	8.3007E-05	511.23781288785347	40.992	0.62163	40.992	40.754	41.375	0					38	13	4	0	0	0	0.16264	1	2527	2527		82.75	23.969	1	923960			13622	3722	11078	11092	15017	15017					-0.04827744515137056
GETEKGSTSH	10	Unmodified	_GETEKGSTSH_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.7892456054688	2	516.73326	1031.45197	-0.33195	-0.00017153	4.0179	0.0020762	3.6859	0.0019047	516.7353400180986	70.611	0.2343	70.611	70.447	70.681	0					8	5	2	0	0	0	0.027149	1	6791	6791		79.713	2.9384	1	251770	+		13623	22219	11079	11093	15018	15018					-0.06250093080802799
GETGLGKSTL	10	Unmodified	_GETGLGKSTL_					0	0	0		ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;nc|ENSG00000125354|Q14141-3|SEPTIN6	ENSG00000125354|ENST00000394610|SEPTIN6	ENSG00000125354|ENST00000394610|SEPTIN6	MULTI-MSMS	OvCa99_classI_Rep5	1	481.76214599609375	2	481.761289	961.508025	-0.40599	-0.00019559	-0.16027	-7.7213E-05	-0.56627	-0.0002728	481.76118460398993	54.726	1.0231	54.726	54.378	55.401	0					75	23	4	0	0	0	0.019275	2	4426	4426;4450		148.69	0	1	17610000			13624	3701	11080	11094	15019;15020	15019					0.025731598266816036
GETIEKVVF	9	Unmodified	_GETIEKVVF_					0	0	0		ENST00000493555.5_1_1:118439453-118462815:-|nuORF;nc|ENSG00000196505|Q9NXN4-2|GDAP2;ENSG00000196505|ENST00000369443|GDAP2	ENST00000493555.5_1_1:118439453-118462815:-|nuORF	ENST00000493555.5_1_1:118439453-118462815:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	511.28411865234375	2	511.281857	1020.54916	1.0472	0.00053541	1.4272	0.00072968	2.4744	0.0012651	511.2824074616929	90.905	0.67312	90.905	90.698	91.372	0					31	16	3	0	0	0	0.48047	1	9764	9764		44.377	0.26039	1	1766200			13625	8618	11081	11095	15021	15021					0.03970920866152028
GETIEKVVF	9	Unmodified	_GETIEKVVF_					0	0	0		ENST00000493555.5_1_1:118439453-118462815:-|nuORF;nc|ENSG00000196505|Q9NXN4-2|GDAP2;ENSG00000196505|ENST00000369443|GDAP2	ENST00000493555.5_1_1:118439453-118462815:-|nuORF	ENST00000493555.5_1_1:118439453-118462815:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	511.281857	1020.54916	0.67851	0.00034691	-1.618	-0.00082726	-0.9395	-0.00048035	511.28078204692633	92.008	0.84142	90.772	90.537	91.378	-1.2355	0.002394	-0.0018398	NaN	44.377	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91932			13626	8618	11081	11095							0.03970920866152028
GETIEKVVF	9	Unmodified	_GETIEKVVF_					0	0	0		ENST00000493555.5_1_1:118439453-118462815:-|nuORF;nc|ENSG00000196505|Q9NXN4-2|GDAP2;ENSG00000196505|ENST00000369443|GDAP2	ENST00000493555.5_1_1:118439453-118462815:-|nuORF	ENST00000493555.5_1_1:118439453-118462815:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	511.281857	1020.54916	-1.3463	-0.00068832	-2.4547	-0.001255	-3.8009	-0.0019433	511.28026650638424	92.668	0.66005	90.706	90.468	91.128	-1.9617	-0.063591	-0.0026953	NaN	44.377	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153350			13627	8618	11081	11095							0.03970920866152028
GETIEKVVF	9	Unmodified	_GETIEKVVF_					0	0	0		ENST00000493555.5_1_1:118439453-118462815:-|nuORF;nc|ENSG00000196505|Q9NXN4-2|GDAP2;ENSG00000196505|ENST00000369443|GDAP2	ENST00000493555.5_1_1:118439453-118462815:-|nuORF	ENST00000493555.5_1_1:118439453-118462815:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	511.281857	1020.54916	-0.89618	-0.0004582	-0.96708	-0.00049445	-1.8633	-0.00095265	511.281482085823	93.203	0.49576	90.696	90.563	91.059	-2.5072	-0.074162	-0.0011742	NaN	44.377	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131010			13628	8618	11081	11095							0.03970920866152028
GETIGIRKR	9	Unmodified	_GETIGIRKR_					0	0	0		SLC24A2|p.S531Rfs*7|1|0.08|ENSG00000155886|chr9:19521037-19521037|A/-|frameshift_variant	SLC24A2|p.S531Rfs*7|1|0.08|ENSG00000155886|chr9:19521037-19521037|A/-|frameshift_variant	SLC24A2|p.S531Rfs*7|1|0.08|ENSG00000155886|chr9:19521037-19521037|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.3116455078125	2	515.311815	1028.60908	0.67052	0.00034553	-1.334	-0.00068741	-0.66345	-0.00034188	515.3111559710834	35.314	1.6978	32.465	32.19	33.887	-2.849					108	33	5	0	0	0	0.48324	1	1189	1189		44.117	6.9577	1	2437400			13629	32822	11082	11096	15022	15022					0.09591656320026232
GETIHIPTM	9	Oxidation (M)	_GETIHIPTM(Oxidation (M))_		GETIHIPTM(1)		GETIHIPTM(190)	0	0	1		nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1;chr12:24878649-24894275|315|12.83|0.4|5.01|-|ENST00000539780|BCAT1,BCAT1;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1	nc|ENSG00000060982|P54687-2|BCAT1	nc|ENSG00000060982|P54687-2|BCAT1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7488708496094	2	507.749867	1013.48518	-0.39503	-0.00020058	0.19173	9.7352E-05	-0.2033	-0.00010322	507.74981782222335	78.047	1.368	76.258	75.884	77.252	-1.7894					67	26	3	0	0	0	0.0071018	3	6515	6510;6515;6520		187.63	63.039	1	368900			13630	313	11083	11097	15023;15024;15025	15024		6			-0.02102182562452981
GETIHIPTM	9	Oxidation (M)	_GETIHIPTM(Oxidation (M))_		GETIHIPTM(1)		GETIHIPTM(220)	0	0	1		nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1;chr12:24878649-24894275|315|12.83|0.4|5.01|-|ENST00000539780|BCAT1,BCAT1;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1	nc|ENSG00000060982|P54687-2|BCAT1	nc|ENSG00000060982|P54687-2|BCAT1	MULTI-MSMS	OvCa9_classI_Rep3	3	507.7499084472656	2	507.749867	1013.48518	-0.90514	-0.00045958	0.69196	0.00035134	-0.21318	-0.00010824	507.7501152779173	78.109	1.8428	75.756	75.402	77.244	-2.3527					85	36	4	0	0	0	0.0079648	4	4124	4124;4130;4137;4143		221.53	83.292	1	979370			13631	313	11083	11097	15026;15027;15028;15029	15026		6			-0.02102182562452981
GETIHIPTM	9	Oxidation (M)	_GETIHIPTM(Oxidation (M))_		GETIHIPTM(1)		GETIHIPTM(240)	0	0	1		nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1;chr12:24878649-24894275|315|12.83|0.4|5.01|-|ENST00000539780|BCAT1,BCAT1;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1	nc|ENSG00000060982|P54687-2|BCAT1	nc|ENSG00000060982|P54687-2|BCAT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.750732421875	2	507.749867	1013.48518	-0.25372	-0.00012882	-0.25612	-0.00013004	-0.50983	-0.00025887	507.7496502780521	78.25	0.67485	75.433	75.067	75.742	-2.8165					34	13	3	0	0	0	0.00053208	2	6290	6290;6301		240.12	101.87	1	1710700			13632	313	11083	11097	15030;15031	15030		6			-0.02102182562452981
GETIHIPTM	9	Oxidation (M)	_GETIHIPTM(Oxidation (M))_		GETIHIPTM(1)		GETIHIPTM(240)	0	0	1		nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1;chr12:24878649-24894275|315|12.83|0.4|5.01|-|ENST00000539780|BCAT1,BCAT1;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1	nc|ENSG00000060982|P54687-2|BCAT1	nc|ENSG00000060982|P54687-2|BCAT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7509460449219	2	507.749867	1013.48518	-0.31506	-0.00015997	-0.31053	-0.00015767	-0.62559	-0.00031764	507.7495852052959	78.814	2.0087	76.062	75.761	77.769	-2.7514					94	41	4	0	0	0	0.00053208	4	6352	6352;6361;6373;6385		240.12	101.87	1	1834900			13633	313	11083	11097	15032;15033;15034;15035	15032		6			-0.02102182562452981
GETIHIPTM	9	Unmodified	_GETIHIPTM_					0	0	0		nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1;chr12:24878649-24894275|315|12.83|0.4|5.01|-|ENST00000539780|BCAT1,BCAT1;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1	nc|ENSG00000060982|P54687-2|BCAT1	nc|ENSG00000060982|P54687-2|BCAT1	MULTI-MSMS	OvCa9_classI_Rep2	2	499.751708984375	2	499.75241	997.490267	-0.14473	-7.233E-05	-0.2156	-0.00010775	-0.36033	-0.00018008	499.752172841888	96.909	1.8665	95.95	95.381	97.247	-0.95857					103	37	4	0	0	0	0.0071018	8	8743	8743;8748;8755;8761;8773;8779;8785;8790		211.23	125.87	1	707630			13634	313	11083	11098	15036;15037;15038;15039;15040;15041;15042;15043	15036					-0.008578786998441501
GETIHIPTM	9	Unmodified	_GETIHIPTM_					0	0	0		nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1;chr12:24878649-24894275|315|12.83|0.4|5.01|-|ENST00000539780|BCAT1,BCAT1;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1	nc|ENSG00000060982|P54687-2|BCAT1	nc|ENSG00000060982|P54687-2|BCAT1	MULTI-MSMS	OvCa9_classI_Rep3	3	499.7529602050781	2	499.75241	997.490267	-0.76825	-0.00038393	0.25403	0.00012695	-0.51421	-0.00025698	499.7524141127609	97.634	1.674	95.874	95.26	96.934	-1.7595					83	32	3	0	0	0	0.00053208	3	6481	6476;6481;6487		240.12	123.21	1	828690			13635	313	11083	11098	15044;15045;15046	15045					-0.008578786998441501
GETIHIPTM	9	Unmodified	_GETIHIPTM_					0	0	0		nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1;chr12:24878649-24894275|315|12.83|0.4|5.01|-|ENST00000539780|BCAT1,BCAT1;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1	nc|ENSG00000060982|P54687-2|BCAT1	nc|ENSG00000060982|P54687-2|BCAT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.75274658203125	2	499.75241	997.490267	-0.12409	-6.2016E-05	-0.15984	-7.9881E-05	-0.28393	-0.0001419	499.75221074852965	98.272	2.1476	95.893	95.216	97.364	-2.3786					99	41	4	0	0	0	0.0071018	6	8714	8704;8714;8727;8739;8750;8766		187.63	89.953	1	897560			13636	313	11083	11098	15047;15048;15049;15050;15051;15052	15048					-0.008578786998441501
GETLYRARHQT	11	Unmodified	_GETLYRARHQT_					0	0	0			REV__nc|ENSG00000102908|O94916-2|NFAT5	REV__nc|ENSG00000102908|O94916-2|NFAT5	MSMS	OvCa99_classI_Rep5	1	444.5647888183594	3	444.565342	1330.6742	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.444	1	46.444	45.944	46.944	0								0	0	0	0.19268	1	3280	3280		43.419	9.332	1		+		13637	17580	11084	11099	15053	15053					0.022086060552283016
GETQKTISL	9	Unmodified	_GETQKTISL_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3;ENST00000468245.2_1_6:101296020-101315873:-|nuORF	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.77166748046875	2	488.769114	975.523675	-0.3116	-0.0001523	-1.853	-0.00090567	-2.1646	-0.001058	488.7677976444438	65.452	0.87393	61.967	61.647	62.521	-3.4854					42	17	3	0	0	0	0.084918	1	4714	4714		101.25	5.0622	1	543720			13638	2891	11085	11100	15054	15054					0.034934463437252816
GETQKTISL	9	Unmodified	_GETQKTISL_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3;ENST00000468245.2_1_6:101296020-101315873:-|nuORF	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	488.769114	975.523675	0.55052	0.00026908	-1.1965	-0.00058481	-0.64597	-0.00031573	488.76766295767584	64.843	0.68245	62.119	61.758	62.44	-2.7246	0.076043	0.00042288	NaN	101.25	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109070			13639	2891	11085	11100							0.034934463437252816
GETQNAAALPG	11	Unmodified	_GETQNAAALPG_					0	0	0		ENSG00000019186|ENST00000216862|CYP24A1;nc|ENSG00000019186|Q07973-2|CYP24A1	ENSG00000019186|ENST00000216862|CYP24A1	ENSG00000019186|ENST00000216862|CYP24A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.7734985351562	2	514.753995	1027.49344	-0.6223	-0.00032033	-4.3101	-0.0022186	-4.9324	-0.002539	515.2520329775123	40.461	0.41875	40.461	40.247	40.666	0					19	8	3	0	0	0	0.025853	1	2434	2434		35.618	7.736	1	83179			13640	1017	11086	11101	15055	15055					-0.019209123214977808
GETSTVEKL	9	Unmodified	_GETSTVEKL_					0	0	0		ENST00000509705.3_1_19:39390655-39398344:+|nuORF;nc|ENSG00000104825|Q15653-2|NFKBIB;ENSG00000104825|ENST00000313582|NFKBIB	ENST00000509705.3_1_19:39390655-39398344:+|nuORF	ENST00000509705.3_1_19:39390655-39398344:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	482.25433349609375	2	482.253297	962.492041	0.026589	1.2823E-05	0.57671	0.00027812	0.6033	0.00029094	482.2534625576387	68.836	0.82423	68.836	68.523	69.347	0					57	19	4	0	0	0	0.055627	1	6512	6512		115.49	8.4865	1	3524200			13641	12963	11087	11102	15056	15056					0.009294535897652167
GETSTVEKL	9	Unmodified	_GETSTVEKL_					0	0	0		ENST00000509705.3_1_19:39390655-39398344:+|nuORF;nc|ENSG00000104825|Q15653-2|NFKBIB;ENSG00000104825|ENST00000313582|NFKBIB	ENST00000509705.3_1_19:39390655-39398344:+|nuORF	ENST00000509705.3_1_19:39390655-39398344:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	482.253297	962.492041	0.31135	0.00015015	-0.097284	-4.6916E-05	0.21407	0.00010324	482.25310798106113	71.318	1.6107	68.81	67.979	69.59	-2.5072	0.034297	-0.00056177	NaN	115.49	58	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74119			13642	12963	11087	11102							0.009294535897652167
GETSTVEKL	9	Unmodified	_GETSTVEKL_					0	0	0		ENST00000509705.3_1_19:39390655-39398344:+|nuORF;nc|ENSG00000104825|Q15653-2|NFKBIB;ENSG00000104825|ENST00000313582|NFKBIB	ENST00000509705.3_1_19:39390655-39398344:+|nuORF	ENST00000509705.3_1_19:39390655-39398344:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	482.253297	962.492041	-1.3215	-0.0006373	0.88846	0.00042846	-0.43304	-0.00020883	482.2537037561657	72.138	1.3606	68.682	68.364	69.725	-3.4563	-0.094364	0.00038899	NaN	115.49	77	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	308020			13643	12963	11087	11102							0.009294535897652167
GETVPEGYTC	10	Unmodified	_GETVPEGYTC_					0	0	0		DENND4C|p.S1184Afs*8|1|0.04|ENSG00000137145|chr9:19346465-19346466|-/GCCA|frameshift_variant;DENND4C|p.S1183Rfs*22|1|0.06|ENSG00000137145|chr9:19346464-19346465|-/GGAGCAGA|frameshift_variant;nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;ENST00000602708.1_1_9:19230809-19276502:+|nuORF	DENND4C|p.S1184Afs*8|1|0.04|ENSG00000137145|chr9:19346465-19346466|-/GCCA|frameshift_variant	DENND4C|p.S1184Afs*8|1|0.04|ENSG00000137145|chr9:19346465-19346466|-/GCCA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.8585205078125	2	528.221139	1054.42773	-0.075309	-3.978E-05	-2.9433	-0.0015547	-3.0186	-0.0015945	528.2196797712135	31.259	0.23692	31.259	31.124	31.361	0					7	4	2	0	0	0	0.027028	1	1274	1274		24.519	0	1	25769			13644	729	11088	11103	15057	15057					-0.09731069558665695
GETVSGKVSL	10	Unmodified	_GETVSGKVSL_					0	0	0		ENSG00000151502|ENST00000281187|VPS26B	ENSG00000151502|ENST00000281187|VPS26B	ENSG00000151502|ENST00000281187|VPS26B	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.7703857421875	2	488.769114	975.523675	-0.3116	-0.0001523	-1.853	-0.00090567	-2.1646	-0.001058	488.7677976444438	65.452	0.87393	61.967	61.647	62.521	-3.4854					42	17	3	0	0	0	0.34811	1	4701	4701		75.043	0.78827	1	543720			13645	5560	11089	11104	15058	15058					0.034934463437252816
GEVDFRDIDL	10	Unmodified	_GEVDFRDIDL_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	OvCa99_classI_Rep5	1	589.7901611328125	2	589.788035	1177.56152	0.77003	0.00045415	1.8943	0.0011172	2.6643	0.0015714	589.7888672107481	114.16	0.77132	114.16	113.88	114.65	0					39	16	4	0	0	0	0.084482	2	13018	13018;13041		117.53	26.925	1	1889000			13646	2561	11090	11105	15059;15060	15059					-0.02016087461470306
GEVDFRDIDL	10	Unmodified	_GEVDFRDIDL_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MATCH	OvCa9_classI_Rep2	2		2	589.788035	1177.56152	-0.32512	-0.00019175	0.13807	8.1434E-05	-0.18705	-0.00011032	589.7879332332707	114.36	0.69004	114.25	113.91	114.6	-0.11777	0.21183	-0.00088163	NaN	117.53	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33566			13647	2561	11090	11105							-0.02016087461470306
GEVDFRDIDL	10	Unmodified	_GEVDFRDIDL_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MATCH	OvCa9_classI_Rep3	3		2	589.788035	1177.56152	-1.315	-0.00077554	1.0194	0.00060124	-0.29554	-0.0001743	589.788781357471	114.94	0.78967	113.89	113.65	114.44	-1.055	-0.14689	0.00015798	NaN	117.53	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42917			13648	2561	11090	11105							-0.02016087461470306
GEVDFRDIDL	10	Unmodified	_GEVDFRDIDL_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	589.788035	1177.56152	0.29634	0.00017478	-0.72024	-0.00042479	-0.42391	-0.00025001	589.7875226104421	115.24	0.99363	113.85	113.62	114.61	-1.3977	-0.18768	-0.0018941	NaN	117.53	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56477			13649	2561	11090	11105							-0.02016087461470306
GEVDPKVAL	9	Unmodified	_GEVDPKVAL_					0	0	0		ENSG00000099795|ENST00000215565|NDUFB7;ENST00000593353.5_1_19:14676947-14682853:-|nuORF	ENSG00000099795|ENST00000215565|NDUFB7	ENSG00000099795|ENST00000215565|NDUFB7	MULTI-MSMS	OvCa99_classI_Rep5	1	464.2620544433594	2	464.260925	926.507297	2.1131	0.00098105	0.047652	2.2123E-05	2.1608	0.0010032	464.2607687289736	76.587	0.80438	76.587	76.28	77.085	0					78	19	6	0	0	0	0.014964	2	7696	7668;7696		153.04	51.435	1	19934000			13650	1977	11091	11106	15061;15062	15062					0.04110365177609765
GEVDPKVAL	9	Unmodified	_GEVDPKVAL_					0	0	0		ENSG00000099795|ENST00000215565|NDUFB7;ENST00000593353.5_1_19:14676947-14682853:-|nuORF	ENSG00000099795|ENST00000215565|NDUFB7	ENSG00000099795|ENST00000215565|NDUFB7	MULTI-MSMS	OvCa9_classI_Rep2	2	464.26019287109375	2	464.260925	926.507297	-0.14118	-6.5546E-05	-0.94032	-0.00043655	-1.0815	-0.0005021	464.2608902558396	78.313	1.8408	76.573	75.777	77.617	-1.7398					77	35	4	0	0	0	0.070405	5	6546	6523;6546;6551;6558;6571		107.01	29.69	1	456250			13651	1977	11091	11106	15063;15064;15065;15066;15067	15064					0.04110365177609765
GEVDPKVAL	9	Unmodified	_GEVDPKVAL_					0	0	0		ENSG00000099795|ENST00000215565|NDUFB7;ENST00000593353.5_1_19:14676947-14682853:-|nuORF	ENSG00000099795|ENST00000215565|NDUFB7	ENSG00000099795|ENST00000215565|NDUFB7	MULTI-MSMS	OvCa9_classI_Rep3	3	464.2610778808594	2	464.260925	926.507297	-0.41772	-0.00019393	0.36513	0.00016951	-0.052592	-2.4417E-05	464.26103014792375	78.429	1.6496	76.076	75.749	77.399	-2.3527					76	32	4	0	0	0	0.049969	2	4167	4167;4171		118.74	44.488	1	859540			13652	1977	11091	11106	15068;15069	15068					0.04110365177609765
GEVDPKVAL	9	Unmodified	_GEVDPKVAL_					0	0	0		ENSG00000099795|ENST00000215565|NDUFB7;ENST00000593353.5_1_19:14676947-14682853:-|nuORF	ENSG00000099795|ENST00000215565|NDUFB7	ENSG00000099795|ENST00000215565|NDUFB7	MULTI-MSMS	OvCa9_classI_Rep4_	4	464.26171875	2	464.260925	926.507297	-0.42558	-0.00019758	-2.3135	-0.001074	-2.739	-0.0012716	464.2606977952047	79.122	1.6821	76.371	75.991	77.673	-2.7514					92	34	4	0	0	0	0.013607	5	6417	6404;6417;6429;6441;6455		157.33	35.153	1	2409000			13653	1977	11091	11106	15070;15071;15072;15073;15074	15071					0.04110365177609765
GEVDVDVPKL	10	Unmodified	_GEVDVDVPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.7904052734375	2	535.790047	1069.56554	-1.5817	-0.00084748	1.1597	0.00062133	-0.42209	-0.00022615	535.7905797841811	99.543	1.4877	97.218	96.795	98.283	-2.3253					61	28	4	0	0	0	0.35539	1	8878	8878		74.165	19.389	1	231760			13654	3687	11092	11107	15075	15075					0.033540020322334385
GEVDVDVPKL	10	Unmodified	_GEVDVDVPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MATCH	OvCa9_classI_Rep2	2		2	535.790047	1069.56554	-1.2079	-0.0006472	0.34459	0.00018463	-0.86334	-0.00046257	535.7901706537103	98.236	1.431	97.343	96.974	98.405	-0.89306	0.047443	-6.1256E-05	NaN	74.165	56	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169760			13655	3687	11092	11107							0.033540020322334385
GEVDVDVPKL	10	Unmodified	_GEVDVDVPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MATCH	OvCa9_classI_Rep3	3		2	535.790047	1069.56554	0.78572	0.00042098	-1.5396	-0.00082488	-0.75383	-0.0004039	535.7894014892298	99.011	1.1878	97.326	97.009	98.196	-1.685	0.030439	-0.0020803	NaN	74.165	61	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262770			13656	3687	11092	11107							0.033540020322334385
GEVDVEQHTL	10	Unmodified	_GEVDVEQHTL_					0	0	0		ENSG00000157456|ENST00000288207|CCNB2;CCNB1|p.G359Afs*3|1|0.03|ENSG00000134057|chr5:69175529-69175530|-/CTCT|frameshift_variant;CCNB1|p.G359Lfs*6|1|0.05|ENSG00000134057|chr5:69175528-69175529|-/CTCCTTCATCATA|frameshift_variant;nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1	ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	MULTI-MSMS	OvCa99_classI_Rep5	1	563.7738037109375	2	563.772385	1125.53022	0.085842	4.8395E-05	-0.48848	-0.00027539	-0.40264	-0.000227	563.7721156912255	67.666	1.6002	67.666	67.173	68.774	0					104	39	4	0	0	0	1.2281E-07	2	6340	6340;6372		223.32	90.563	1	21765000			13657	5893	11093	11108	15076;15077	15076					-0.027526604955710354
GEVDVEQHTL	10	Unmodified	_GEVDVEQHTL_					0	0	0		ENSG00000157456|ENST00000288207|CCNB2;CCNB1|p.G359Afs*3|1|0.03|ENSG00000134057|chr5:69175529-69175530|-/CTCT|frameshift_variant;CCNB1|p.G359Lfs*6|1|0.05|ENSG00000134057|chr5:69175528-69175529|-/CTCCTTCATCATA|frameshift_variant;nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1	ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.7731323242188	2	563.772385	1125.53022	0.55647	0.00031372	-0.66088	-0.00037259	-0.10441	-5.8865E-05	563.7719653083323	70.631	1.6966	67.149	66.836	68.533	-3.4812					81	34	3	0	0	0	2.1085E-18	3	5355	5342;5355;5368		268.72	110.65	1	1799900			13658	5893	11093	11108	15078;15079;15080	15079					-0.027526604955710354
GEVDVEQHTL	10	Unmodified	_GEVDVEQHTL_					0	0	0		ENSG00000157456|ENST00000288207|CCNB2;CCNB1|p.G359Afs*3|1|0.03|ENSG00000134057|chr5:69175529-69175530|-/CTCT|frameshift_variant;CCNB1|p.G359Lfs*6|1|0.05|ENSG00000134057|chr5:69175528-69175529|-/CTCCTTCATCATA|frameshift_variant;nc|ENSG00000134057|P14635-2|CCNB1;ENSG00000134057|ENST00000256442|CCNB1	ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	563.772385	1125.53022	0.017169	9.6792E-06	-0.17236	-9.7171E-05	-0.15519	-8.7492E-05	563.7721670822102	69.761	1.7132	67.19	66.765	68.478	-2.5707	0.020383	8.7262E-05	NaN	268.72	75	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286670			13659	5893	11093	11108							-0.027526604955710354
GEVEKYQQL	9	Unmodified	_GEVEKYQQL_					0	0	0		ENST00000395134.3_1_6:33257633-33258228:+|nuORF;ENSG00000204220|ENST00000374606|PFDN6;ENST00000491382.1_1_6:33257633-33258228:+|nuORF	ENST00000395134.3_1_6:33257633-33258228:+|nuORF	ENST00000395134.3_1_6:33257633-33258228:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	547.2815551757812	2	547.279846	1092.54514	-0.48289	-0.00026428	0.57324	0.00031372	0.090351	4.9447E-05	547.2799016632067	60.053	0.67926	60.053	59.839	60.518	0					34	16	3	0	0	0	0.1149	1	5208	5208		93.143	15.826	1	5163900			13660	8958	11094	11109	15081	15081					0.002568313724395921
GEVEKYQQL	9	Unmodified	_GEVEKYQQL_					0	0	0		ENST00000395134.3_1_6:33257633-33258228:+|nuORF;ENSG00000204220|ENST00000374606|PFDN6;ENST00000491382.1_1_6:33257633-33258228:+|nuORF	ENST00000395134.3_1_6:33257633-33258228:+|nuORF	ENST00000395134.3_1_6:33257633-33258228:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	547.279846	1092.54514	-0.57895	-0.00031685	0.48952	0.0002679	-0.089432	-4.8944E-05	547.279691369822	63.749	0.62336	60.274	59.916	60.539	-3.475	0.11044	-7.1377E-05	NaN	93.143	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	340530			13661	8958	11094	11109							0.002568313724395921
GEVGHHIDL	9	Unmodified	_GEVGHHIDL_					0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	MULTI-MSMS	OvCa99_classI_Rep5	1	488.7453918457031	2	488.745973	975.477394	-0.86406	-0.0004223	1.5302	0.0007479	0.66619	0.0003256	488.7466153533548	53.496	0.46896	53.496	53.305	53.774	0					19	10	2	0	0	0	0.12365	1	4256	4256		90.777	16.802	1	1521000			13662	2828	11095	11110	15082	15082					-0.011325737677111647
GEVGIYQVQL	10	Unmodified	_GEVGIYQVQL_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4;ITGB4|p.D539*|1|0.13|ENSG00000132470|chr17:75733648-75733649|-/C|frameshift_variant;ITGB4|p.L550Ifs*220|1|0.07|ENSG00000132470|chr17:75733682-75733683|-/AT|frameshift_variant	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	OvCa9_classI_Rep2	2	553.2977294921875	2	553.298039	1104.58152	0.53518	0.00029611	-0.5847	-0.00032351	-0.049517	-2.7398E-05	553.2975273463089	122.58	1.1353	122.36	122.12	123.25	-0.21803					44	22	3	0	0	0	0.30325	5	11867	11867;11872;11879;11885;11905		80.455	16.921	1	125250			13663	4140	11096	11111	15083;15084;15085;15086;15087	15083					0.033417082691585165
GEVGIYQVQL	10	Unmodified	_GEVGIYQVQL_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4;ITGB4|p.D539*|1|0.13|ENSG00000132470|chr17:75733648-75733649|-/C|frameshift_variant;ITGB4|p.L550Ifs*220|1|0.07|ENSG00000132470|chr17:75733682-75733683|-/AT|frameshift_variant	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	OvCa9_classI_Rep3	3	553.2972412109375	2	553.298039	1104.58152	0.94178	0.00052108	-0.79423	-0.00043945	0.14754	8.1636E-05	553.297469368567	123.2	0.93163	122.16	121.89	122.82	-1.0377					42	17	4	0	0	0	0.34811	3	9516	9499;9504;9516		75.043	17.727	1	159500			13664	4140	11096	11111	15088;15089;15090	15090					0.033417082691585165
GEVGIYQVQL	10	Unmodified	_GEVGIYQVQL_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4;ITGB4|p.D539*|1|0.13|ENSG00000132470|chr17:75733648-75733649|-/C|frameshift_variant;ITGB4|p.L550Ifs*220|1|0.07|ENSG00000132470|chr17:75733682-75733683|-/AT|frameshift_variant	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.2965087890625	2	553.298039	1104.58152	-0.058927	-3.2604E-05	-0.059301	-3.2811E-05	-0.11823	-6.5415E-05	553.2978150854092	123.58	0.98997	122.21	121.9	122.89	-1.3666					47	19	4	0	0	0	0.40664	1	11688	11688		67.494	7.3754	1	186630			13665	4140	11096	11111	15091	15091					0.033417082691585165
GEVIHTGTL	9	Unmodified	_GEVIHTGTL_					0	0	0		ENST00000456718.1_1_19:53095393-53099039:+|nuORF;ENSG00000180257|ENST00000444460|ZNF816	ENST00000456718.1_1_19:53095393-53099039:+|nuORF	ENST00000456718.1_1_19:53095393-53099039:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.2801513671875	2	463.750724	925.486896	1.4849	0.00068864	2.7464	0.0012737	4.2313	0.0019623	463.75131184571455	81.664	0.89337	81.664	81.413	82.307	0					48	21	3	0	0	0	0.027462	1	8471	8471		37.159	22.495	1	815700			13666	7865	11097	11112	15092	15092					0.021171945178252827
GEVKDFPDL	9	Unmodified	_GEVKDFPDL_					0	0	0		ENSG00000103365|ENST00000309859|GGA2	ENSG00000103365|ENST00000309859|GGA2	ENSG00000103365|ENST00000309859|GGA2	MULTI-MSMS	OvCa99_classI_Rep5	1	510.25726318359375	2	510.25584	1018.49713	2.4776	0.0012642	-0.2005	-0.00010231	2.2771	0.0011619	510.25562857852304	91.603	1.0427	91.603	91.174	92.216	0					49	24	4	0	0	0	0.1149	1	9869	9869		93.143	13.204	1	4204000			13667	2313	11098	11113	15093	15093					-0.011382425476313074
GEVKDFPDL	9	Unmodified	_GEVKDFPDL_					0	0	0		ENSG00000103365|ENST00000309859|GGA2	ENSG00000103365|ENST00000309859|GGA2	ENSG00000103365|ENST00000309859|GGA2	MULTI-MSMS	OvCa9_classI_Rep3	3	510.25634765625	2	510.25584	1018.49713	-1.1717	-0.00059789	1.2115	0.00061816	0.039724	2.0269E-05	510.2563495154102	93.665	1.2184	91.704	91.427	92.645	-1.9617					42	23	3	0	0	0	0.16264	1	6008	6008		82.75	16.321	1	332670			13668	2313	11098	11113	15094	15094					-0.011382425476313074
GEVKDFPDL	9	Unmodified	_GEVKDFPDL_					0	0	0		ENSG00000103365|ENST00000309859|GGA2	ENSG00000103365|ENST00000309859|GGA2	ENSG00000103365|ENST00000309859|GGA2	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.25689697265625	2	510.25584	1018.49713	-0.51942	-0.00026504	0.57062	0.00029116	0.051199	2.6125E-05	510.25596430486	94.27	1.3336	91.801	91.478	92.811	-2.4685					48	26	4	0	0	0	0.1243	2	8250	8250;8260		90.601	21.814	1	252500			13669	2313	11098	11113	15095;15096	15095					-0.011382425476313074
GEVKDFPDL	9	Unmodified	_GEVKDFPDL_					0	0	0		ENSG00000103365|ENST00000309859|GGA2	ENSG00000103365|ENST00000309859|GGA2	ENSG00000103365|ENST00000309859|GGA2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	510.25584	1018.49713	0.049707	2.5363E-05	0.063466	3.2384E-05	0.11317	5.7747E-05	510.25578224352705	93.106	1.1825	91.938	91.498	92.68	-1.168	0.17643	-0.00033196	NaN	93.143	41	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167440			13670	2313	11098	11113							-0.011382425476313074
GEVLDILTRL	10	Unmodified	_GEVLDILTRL_					0	0	0		nc|ENSG00000137312|O75955-2|FLOT1;ENSG00000137312|ENST00000376389|FLOT1;ENST00000487376.5_1_6:30695895-30698542:-|nuORF	nc|ENSG00000137312|O75955-2|FLOT1	nc|ENSG00000137312|O75955-2|FLOT1	MULTI-MSMS	OvCa99_classI_Rep5	1	564.836181640625	2	564.834788	1127.65502	0.94911	0.00053609	1.3513	0.00076324	2.3004	0.0012993	564.835487174641	141.16	1.6048	141.16	140.78	142.39	0					81	31	4	0	0	0	0.18515	1	16496	16496		96.665	22.41	1	1225700			13671	4577	11099	11114	15097	15097					0.0963025671160267
GEVLIDTHL	9	Unmodified	_GEVLIDTHL_					0	0	0		ENSG00000139146|ENST00000337682|SINHCAF;nc|ENSG00000139146|Q9NP50-2|SINHCAF	ENSG00000139146|ENST00000337682|SINHCAF	ENSG00000139146|ENST00000337682|SINHCAF	MULTI-MSMS	OvCa99_classI_Rep5	1	498.774169921875	2	498.771657	995.528761	2.3198	0.001157	-0.699	-0.00034864	1.6208	0.00080839	498.771398247847	95.948	0.46698	95.948	95.743	96.21	0					23	10	3	0	0	0	0.091859	1	10501	10501		99.375	16.624	1	731910			13672	4746	11100	11115	15098	15098					0.030817502063200664
GEVLISRV	8	Unmodified	_GEVLISRV_					0	0	0		nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000484469.5_1_3:183894781-183895400:+|nuORF;ENST00000466598.5_1_3:183894781-183896942:+|nuORF;ENST00000487958.5_1_3:183894781-183898060:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF	nc|ENSG00000161203|Q96CW1-2|AP2M1	nc|ENSG00000161203|Q96CW1-2|AP2M1	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.7647705078125	2	436.763635	871.512717	0.077366	3.3791E-05	-0.05879	-2.5677E-05	0.018576	8.1135E-06	436.7634733337397	77.506	1.1617	74.689	74.44	75.601	-2.8165					55	23	4	0	0	0	0.50206	2	6203	6203;6215		77.318	8.7579	1	457910			13673	6123	11101	11116	15099;15100	15099					0.071820887600893
GEVLISRV	8	Unmodified	_GEVLISRV_					0	0	0		nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000484469.5_1_3:183894781-183895400:+|nuORF;ENST00000466598.5_1_3:183894781-183896942:+|nuORF;ENST00000487958.5_1_3:183894781-183898060:+|nuORF;ENST00000472560.5_1_3:183894781-183898834:+|nuORF	nc|ENSG00000161203|Q96CW1-2|AP2M1	nc|ENSG00000161203|Q96CW1-2|AP2M1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	436.763635	871.512717	-0.037455	-1.6359E-05	-0.023061	-1.0072E-05	-0.060516	-2.6431E-05	436.763522935086	76.491	1.5145	74.637	74.044	75.558	-1.854	-0.026308	9.9385E-06	NaN	77.318	70	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177840			13674	6123	11101	11116							0.071820887600893
GEVLPDIDTL	10	Unmodified	_GEVLPDIDTL_					0	0	0		nc|ENSG00000123240|Q96CV9-3|OPTN;nc|ENSG00000123240|Q96CV9-2|OPTN;ENSG00000123240|ENST00000378747|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	MULTI-MSMS	OvCa99_classI_Rep5	1	536.2819213867188	2	536.282054	1070.54956	1.8146	0.00097313	0.33954	0.00018209	2.1541	0.0011552	536.2820498653326	134.72	0.47104	134.72	134.52	134.99	0					19	10	2	0	0	0	0.079666	1	15684	15684		118.74	57.771	1	433000			13675	3584	11102	11117	15101	15101					0.017102957953284204
GEVNPPNGPV	10	Unmodified	_GEVNPPNGPV_					0	0	0		nc|ENSG00000184675|Q5JTC6-2|AMER1;AMER1|p.A955Gfs*3|1|0.02|ENSG00000184675|chrX:64190425-64190426|-/G|frameshift_variant;ENSG00000184675|ENST00000374869|AMER1	nc|ENSG00000184675|Q5JTC6-2|AMER1	nc|ENSG00000184675|Q5JTC6-2|AMER1	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.2464294433594	2	490.245806	978.47706	-0.21003	-0.00010296	-1.5886	-0.00077879	-1.7986	-0.00088175	490.2450385240117	63.057	3.0011	59.582	59.044	62.045	-3.475					145	61	4	0	0	0	0.66721	1	4402	4402		34.173	0	1	4610600			13676	85	11103	11118	15102	15102					-0.013039934875791914
GEVREDLRL	9	Unmodified	_GEVREDLRL_					0	0	0		ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A	ENSG00000132507|ENST00000336458|EIF5A	ENSG00000132507|ENST00000336458|EIF5A	MULTI-MSMS	OvCa99_classI_Rep5	1	543.7996826171875	2	543.798737	1085.58292	-0.27846	-0.00015143	-0.8367	-0.000455	-1.1152	-0.00060642	543.798168443756	65.251	1.2563	65.251	64.955	66.212	0					85	31	5	0	0	0	0.23241	1	5992	5992		70.816	3.3225	1	36400000			13677	4143	11104	11119	15103	15103					0.0435534235787145
GEVRLGGSL	9	Unmodified	_GEVRLGGSL_					0	0	0		ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-3|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3;nc|ENSG00000163947|Q9NR81-4|ARHGEF3	ENSG00000163947|ENST00000296315|ARHGEF3	ENSG00000163947|ENST00000296315|ARHGEF3	MSMS	OvCa99_classI_Rep5	1	444.25274658203125	2	444.250892	886.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.845	1	70.845	70.345	71.345	0								0	0	0	0.027981	1	6817	6817		115.49	19.304	1				13678	6385	11105	11120	15104	15104					0.03944614237684618
GEVRLSDF	8	Unmodified	_GEVRLSDF_					0	0	0		nc|ENSG00000117682|Q86SQ9-3|DHDDS;nc|ENSG00000117682|Q86SQ9-4|DHDDS;ENSG00000117682|ENST00000236342|DHDDS;nc|ENSG00000117682|Q86SQ9-2|DHDDS	nc|ENSG00000117682|Q86SQ9-3|DHDDS	nc|ENSG00000117682|Q86SQ9-3|DHDDS	MULTI-SECPEP	OvCa9_classI_Rep4_	4	461.7588195800781	2	461.735074	921.455596	-1.2557	-0.00057979	2.6873	0.0012408	1.4316	0.00066103	461.73603847884584	48.481	0.36024	45.374	45.244	45.604	-3.1077					9	6	2	0	0	0	0.028476	1	2702	2702		38.806	0	1	7689.7			13679	3273	11106	11121	15105	15105					-0.008273785162828062
GEVSARQEL	9	Unmodified	_GEVSARQEL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;GNB2-EEF2|1|fusion	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OvCa99_classI_Rep5	1	494.7572326660156	2	494.756538	987.498523	-0.46839	-0.00023174	0.52603	0.00026026	0.057642	2.8519E-05	494.7565401792263	48.918	0.78748	48.918	48.675	49.462	0					43	17	3	0	0	0	0.1243	2	3616	3616;3643		90.601	13.776	1	3284000			13680	6826	11107	11122	15106;15107	15106					0.004273915411431517
GEVVELDRITK	11	Unmodified	_GEVVELDRITK_					0	0	0			REV__nc|ENSG00000065534|Q15746-2|MYLK	REV__nc|ENSG00000065534|Q15746-2|MYLK	MULTI-SECPEP	OvCa99_classI_Rep5	1	420.215087890625	3	420.238232	1257.69287	-0.21446	-9.0123E-05	4.0601	0.0017062	3.8457	0.0016161	420.2392825255067	38.221	0.31847	38.221	37.983	38.301	0					8	6	2	0	0	0	0.025819	1	2159	2159		20.315	0	1	20051	+		13681	16797	11108	11123	15108	15108					0.07432722906401068
GEVVTAAEFRI	11	Unmodified	_GEVVTAAEFRI_					0	0	0		BMP6|p.Y490Sfs*10|1|0.09|ENSG00000153162|chr6:7880270-7880270|A/-|frameshift_variant;ENSG00000153162|ENST00000283147|BMP6	BMP6|p.Y490Sfs*10|1|0.09|ENSG00000153162|chr6:7880270-7880270|A/-|frameshift_variant	BMP6|p.Y490Sfs*10|1|0.09|ENSG00000153162|chr6:7880270-7880270|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	596.80224609375	2	596.322045	1190.62954	-0.89803	-0.00053551	-1.1892	-0.00070916	-2.0872	-0.0012447	596.32091114603	58.664	1.4365	55.884	55.436	56.872	-2.7801					50	27	3	0	0	0	0.025759	1	4279	4279		42.864	5.0528	1	67069			13682	154	11109	11124	15109	15109					0.04184782189190628
GEWAYLTEP	9	Unmodified	_GEWAYLTEP_					0	0	0			REV__ENST00000602224.5_1_19:35823460-35823868:+|nuORF	REV__ENST00000602224.5_1_19:35823460-35823868:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.2777099609375	2	533.248015	1064.48148	0.33166	0.00017686	-4.4803	-0.0023891	-4.1487	-0.0022123	533.2453425168123	86.127	0.35009	83.481	83.243	83.593	-2.6463					10	6	2	0	0	0	0.027462	1	7270	7270		30.504	5.9844	1	19662	+		13683	16495	11110	11125	15110	15110					-0.0481852906466429
GEWAYLTEP	9	Unmodified	_GEWAYLTEP_					0	0	0			REV__ENST00000602224.5_1_19:35823460-35823868:+|nuORF	REV__ENST00000602224.5_1_19:35823460-35823868:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	533.248015	1064.48148	-0.55123	-0.00029394	-2.1966	-0.0011713	-2.7478	-0.0014653	533.2463120941917	85.325	0.49068	83.104	82.744	83.235	-2.2204	-0.18832	0.00073581	NaN	16.473	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12784	+		13684	16495	11110	11125							-0.0481852906466429
GEWEESEVKL	10	Unmodified	_GEWEESEVKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa99_classI_Rep5	1	603.2891235351562	2	603.287868	1204.56118	1.2406	0.00074844	1.2438	0.00075039	2.4844	0.0014988	603.2885665255675	90.996	1.1414	90.996	90.738	91.879	0					89	27	5	0	0	0	0.0061832	2	9774	9774;9805		164.46	65.826	1	18659000			13685	3687	11111	11126	15111;15112	15111					-0.0329150718132496
GEWEESEVKL	10	Unmodified	_GEWEESEVKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep2	2	603.2867431640625	2	603.287868	1204.56118	0.2966	0.00017893	-0.51314	-0.00030957	-0.21654	-0.00013064	603.2874907725129	91.937	1.5602	90.701	90.326	91.886	-1.2355					96	29	4	0	0	0	0.026604	4	8161	8161;8165;8171;8178		140.11	57.362	1	661420			13686	3687	11111	11126	15113;15114;15115;15116	15113					-0.0329150718132496
GEWEESEVKL	10	Unmodified	_GEWEESEVKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep3	3	603.287353515625	2	603.287868	1204.56118	0.53265	0.00032134	-1.7156	-0.001035	-1.1829	-0.00071365	603.2867798328072	92.631	1.8174	90.67	90.423	92.24	-1.9617					92	36	4	0	0	0	0.016395	6	5885	5874;5879;5885;5891;5899;5906		152.06	66.199	1	1325700			13687	3687	11111	11126	15117;15118;15119;15120;15121;15122	15119					-0.0329150718132496
GEWEESEVKL	10	Unmodified	_GEWEESEVKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep4_	4	603.2880249023438	2	603.287868	1204.56118	-0.14017	-8.4564E-05	-0.25652	-0.00015476	-0.39669	-0.00023932	603.2876956405812	93.094	1.7592	90.587	90.212	91.971	-2.5072					82	36	4	0	0	0	0.020903	5	8118	8097;8106;8118;8132;8144		146.79	64.035	1	1201900			13688	3687	11111	11126	15123;15124;15125;15126;15127	15125					-0.0329150718132496
GEWLPLSQ	8	Unmodified	_GEWLPLSQ_					0	0	0			REV__ENSG00000104643|ENST00000221086|MTMR9	REV__ENSG00000104643|ENST00000221086|MTMR9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.2659606933594	2	465.239993	928.465432	-1.5016	-0.00069861	0.40696	0.00018933	-1.0947	-0.00050928	465.2403692303189	95.555	0.25	93.087	92.861	93.111	-2.4685					5	4	2	0	0	0	0.028476	1	8387	8387		25.45	1.2474	1	23909	+		13689	17672	11112	11127	15128	15128					-0.0016619051090174253
GEYDMTVPKL	10	Oxidation (M)	_GEYDM(Oxidation (M))TVPKL_		GEYDM(1)TVPKL		GEYDM(96)TVPKL	0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep2	2	584.7815551757812	2	584.781364	1167.54818	-1.6582	-0.0009697	1.2057	0.00070506	-0.45254	-0.00026464	584.7819856230432	85.183	2.3723	83.653	82.915	85.288	-1.5297					136	46	4	0	0	0	0.18931	1	7356	7356		96.034	39.313	1	586800			13690	3687	11113	11128	15129	15129		114			-0.028896615650637614
GEYDMTVPKL	10	Oxidation (M)	_GEYDM(Oxidation (M))TVPKL_		GEYDM(1)TVPKL		GEYDM(86)TVPKL	0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep3	3	584.7813110351562	2	584.781364	1167.54818	-2.4172	-0.0014135	1.2645	0.00073945	-1.1527	-0.00067406	584.7819070737579	85.777	0.6013	83.556	83.134	83.735	-2.2204					37	11	4	0	0	0	0.25842	2	5072	5065;5072		85.862	13.984	1	1529400			13691	3687	11113	11128	15130;15131	15131		114			-0.028896615650637614
GEYDMTVPKL	10	Oxidation (M)	_GEYDM(Oxidation (M))TVPKL_		GEYDM(1)TVPKL		GEYDM(67)TVPKL	0	0	1		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep3	3	584.7824096679688	2	584.781364	1167.54818	-2.4266	-0.001419	2.2535	0.0013178	-0.17304	-0.00010119	584.7825737123078	86.182	1.1542	83.961	83.686	84.84	-2.2204					69	22	4	0	0	0	0.41036	1	5100	5100		66.962	15.626	1	1588000			13692	3687	11113	11128	15132	15132		114			-0.028896615650637614
GEYDMTVPKL	10	Unmodified	_GEYDMTVPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep2	2	576.7835693359375	2	576.783907	1151.55326	-1.7857	-0.00103	1.3783	0.00079499	-0.40742	-0.00023499	576.7847172980869	101.9	0.99091	101.14	100.77	101.76	-0.764					59	19	4	0	0	0	0.12738	1	9367	9367		106.68	34.806	1	848960			13693	3687	11113	11129	15133	15133					-0.01645357702432193
GEYDMTVPKL	10	Unmodified	_GEYDMTVPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep3	3	576.7841186523438	2	576.783907	1151.55326	-1.1501	-0.00066338	0.96377	0.00055589	-0.18637	-0.00010749	576.7843223261912	102.6	1.1497	101.08	100.74	101.89	-1.5211					66	21	5	0	0	0	0.094891	3	7076	7063;7068;7076		114.89	35.182	1	1001400			13694	3687	11113	11129	15134;15135;15136	15136					-0.01645357702432193
GEYDMTVPKL	10	Unmodified	_GEYDMTVPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep4_	4	576.7833251953125	2	576.783907	1151.55326	-0.80662	-0.00046524	0.77333	0.00044604	-0.033288	-1.92E-05	576.7842258375401	103.21	1.3067	101.01	100.52	101.82	-2.1994					74	24	4	0	0	0	0.12738	4	9299	9299;9308;9320;9333		106.68	44.576	1	957400			13695	3687	11113	11129	15137;15138;15139;15140	15137					-0.01645357702432193
GEYDVTMPKV	10	Unmodified	_GEYDVTMPKV_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant;AHNAK|p.P895Cfs*7|1|0.12|ENSG00000124942|chr11:62531725-62531735|CCACTTCTGGG/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep2	2	569.7753295898438	2	569.776082	1137.53761	-0.51135	-0.00029135	0.64423	0.00036707	0.13288	7.5711E-05	569.7763863925492	93.267	1.838	92.099	91.603	93.441	-1.168					59	35	2	0	0	0	0.24109	3	8323	8311;8317;8323		88.177	28.059	1	279700			13696	3687	11114	11130	15141;15142;15143	15143					-0.025656442194986084
GEYDVTMPKV	10	Unmodified	_GEYDVTMPKV_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant;AHNAK|p.P895Cfs*7|1|0.12|ENSG00000124942|chr11:62531725-62531735|CCACTTCTGGG/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep4_	4	569.777099609375	2	569.776082	1137.53761	-0.081982	-4.6712E-05	-0.25678	-0.0001463	-0.33876	-0.00019302	569.7758241318322	94.47	1.6977	92.001	91.666	93.363	-2.4685					60	33	2	0	0	0	0.18931	2	8274	8274;8286		96.034	18.716	1	383540			13697	3687	11114	11130	15144;15145	15144					-0.025656442194986084
GEYDVTVPKL	10	Unmodified	_GEYDVTVPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant;AHNAK|p.P895Cfs*7|1|0.12|ENSG00000124942|chr11:62531725-62531735|CCACTTCTGGG/-|frameshift_variant;AHNAK|p.P767Cfs*7|1|0.15|ENSG00000124942|chr11:62532109-62532119|CCACTTCTGGG/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep2	2	560.7974243164062	2	560.797872	1119.58119	-0.67152	-0.00037659	0.081014	4.5432E-05	-0.59051	-0.00033115	560.7979621587541	101.06	2.3283	100.29	99.674	102	-0.76401					78	46	2	0	0	0	0.12738	5	9243	9237;9243;9255;9261;9281		106.68	16.317	1	1988100			13698	3687	11115	11131	15146;15147;15148;15149;15150	15147					0.026182885492971764
GEYDVTVPKL	10	Unmodified	_GEYDVTVPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant;AHNAK|p.P895Cfs*7|1|0.12|ENSG00000124942|chr11:62531725-62531735|CCACTTCTGGG/-|frameshift_variant;AHNAK|p.P767Cfs*7|1|0.15|ENSG00000124942|chr11:62532109-62532119|CCACTTCTGGG/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep3	3	560.797607421875	2	560.797872	1119.58119	-1.2069	-0.00067685	2.9282	0.0016421	1.7212	0.00096525	560.7983679354917	101.63	2.41	100.07	99.592	102	-1.5638					151	45	7	0	0	0	0.094891	5	6964	6958;6964;6970;6976;6989		114.89	27.238	1	2421700			13699	3687	11115	11131	15151;15152;15153;15154;15155	15152					0.026182885492971764
GEYDVTVPKL	10	Unmodified	_GEYDVTVPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant;AHNAK|p.P895Cfs*7|1|0.12|ENSG00000124942|chr11:62531725-62531735|CCACTTCTGGG/-|frameshift_variant;AHNAK|p.P767Cfs*7|1|0.15|ENSG00000124942|chr11:62532109-62532119|CCACTTCTGGG/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.7980346679688	2	560.797872	1119.58119	1.0498	0.00058871	0.52852	0.00029639	1.5783	0.0008851	560.7970989748085	102.23	2.4606	100.03	99.573	102.03	-2.1994					152	46	6	0	0	0	0.05764	2	9200	9200;9212		126.24	38.546	1	2187800			13700	3687	11115	11131	15156;15157	15156					0.026182885492971764
GEYEKGVDHL	10	Unmodified	_GEYEKGVDHL_					0	0	0		ENSG00000173726|ENST00000366607|TOMM20;chr1:235113910-235117582|121|19.98|0.45|5.47|-|2|TOMM20,None|1	ENSG00000173726|ENST00000366607|TOMM20	ENSG00000173726|ENST00000366607|TOMM20	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.30322265625	2	573.774928	1145.5353	-0.9583	-0.00054985	0.78126	0.00044827	-0.17704	-0.00010158	573.7751999880994	50.306	0.65429	50.306	50.031	50.685	0					39	14	4	0	0	0	0.026624	1	3804	3804		63.534	30.721	1	1727800			13701	7409	11116	11132	15158	15158					-0.031643566329421446
GEYEKGVDHL	10	Unmodified	_GEYEKGVDHL_					0	0	0		ENSG00000173726|ENST00000366607|TOMM20;chr1:235113910-235117582|121|19.98|0.45|5.47|-|2|TOMM20,None|1	ENSG00000173726|ENST00000366607|TOMM20	ENSG00000173726|ENST00000366607|TOMM20	MULTI-MSMS	OvCa9_classI_Rep4_	4	573.7767333984375	2	573.774928	1145.5353	-1.3261	-0.00076091	1.0984	0.00063023	-0.22775	-0.00013068	573.7754634189782	54.507	1.1786	51.259	50.979	52.157	-3.2474					59	22	4	0	0	0	0.33877	2	3394	3382;3394		76.17	28.21	1	373030			13702	7409	11116	11132	15159;15160	15160					-0.031643566329421446
GEYEKGVDHL	10	Unmodified	_GEYEKGVDHL_					0	0	0		ENSG00000173726|ENST00000366607|TOMM20;chr1:235113910-235117582|121|19.98|0.45|5.47|-|2|TOMM20,None|1	ENSG00000173726|ENST00000366607|TOMM20	ENSG00000173726|ENST00000366607|TOMM20	MULTI-MATCH	OvCa9_classI_Rep2	2		2	573.774928	1145.5353	-1.9847	-0.0011387	1.6514	0.00094754	-0.33325	-0.00019121	573.7755872836622	54.241	0.89712	51.427	51.175	52.072	-2.8139	0.084095	0.00044057	NaN	76.17	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68809			13703	7409	11116	11132							-0.031643566329421446
GEYSEAIPIL	10	Unmodified	_GEYSEAIPIL_					0	0	0		nc|ENSG00000105701|Q14318-3|FKBP8;ENST00000544835.7_1_19:18642981-18654375:-|nuORF;nc|ENSG00000105701|Q14318|FKBP8;ENSG00000105701|ENST00000608443|FKBP8	nc|ENSG00000105701|Q14318-3|FKBP8	nc|ENSG00000105701|Q14318-3|FKBP8	MULTI-MSMS	OvCa99_classI_Rep5	1	546.2861938476562	2	546.284597	1090.55464	1.8541	0.0010129	0.37707	0.00020599	2.2312	0.0012189	546.2845551627702	134.18	0.70508	134.18	133.77	134.47	0					35	14	4	0	0	0	0.55359	1	15624	15624		47.657	8.4045	1	467800			13704	2492	11117	11133	15161	15161					0.012985996579573111
GFDLYLNRI	9	Unmodified	_GFDLYLNRI_					0	0	0			REV__ENSG00000168807|ENST00000336278|SNTB2	REV__ENSG00000168807|ENST00000336278|SNTB2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.8286743164062	2	555.800749	1109.58694	-0.61841	-0.00034371	-3.7626	-0.0020913	-4.381	-0.002435	555.7982429069705	66.03	0.43534	62.544	62.325	62.761	-3.4854					12	8	2	0	0	0	0.027462	1	4785	4785		31.955	6.5047	1	55373	+		13705	21407	11118	11134	15162	15162					0.0365343185162601
GFDQAPIRTN	10	Unmodified	_GFDQAPIRTN_					0	0	0		tr|A0A553SSR1|A0A553SSR1_NIACIMannosylglyceratehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_03625PE=3SV=1	tr|A0A553SSR1|A0A553SSR1_NIACIMannosylglyceratehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_03625PE=3SV=1	tr|A0A553SSR1|A0A553SSR1_NIACIMannosylglyceratehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_03625PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.25244140625	2	559.783087	1117.55162	2.1157	0.0011844	-1.6678	-0.00093359	0.44798	0.00025077	559.7820833409135	67.37	0.8834	63.879	63.739	64.622	-3.4902					28	17	2	0	0	0	0.026994	1	4940	4940		25.574	1.0549	1	517280			13706	34405	11119	11135	15163	15163					-0.0024523067618247296
GFDRGGYL	8	Unmodified	_GFDRGGYL_					0	0	0			REV__nc|ENSG00000110046|Q2TAZ0-3|ATG2A	REV__nc|ENSG00000110046|Q2TAZ0-3|ATG2A	MULTI-MSMS	OvCa99_classI_Rep5	1	442.718017578125	2	442.716685	883.418816	1.4823	0.00065625	-1.3261	-0.0005871	0.15619	6.9148E-05	442.71592277200006	72.01	1.0145	72.01	71.749	72.764	0					55	24	4	0	0	0	0.61758	1	7010	7010		60.294	6.9425	1	3461900	+		13707	17965	11120	11136	15164	15164					-0.027556303421874873
GFELPLIIL	9	Unmodified	_GFELPLIIL_					0	0	0			REV__ENST00000580012.1_1_17:8339672-8339975:+|nuORF	REV__ENST00000580012.1_1_17:8339672-8339975:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	507.813232421875	2	507.815336	1013.61612	-5.2506	-0.0026663	1.1828	0.00060065	-4.0678	-0.0020657	507.8157920918579	151.79	1.2085	150.83	150.5	151.71	-0.95647					49	23	3	0	0	0	0.6959	1	12945	12945		19.36	0	1	103240	+		13708	27818	11121	11137	15165	15165					0.1098557614790252
GFGERQFALV	10	Unmodified	_GFGERQFALV_					0	0	0			REV__nc|ENSG00000148498|Q8TEW0-7|PARD3	REV__nc|ENSG00000148498|Q8TEW0-7|PARD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.8163452148438	2	562.298373	1122.58219	1.0256	0.00057672	-4.0713	-0.0022893	-3.0456	-0.0017125	562.298283616037	72.394	0.32593	72.394	72.208	72.533	0					14	7	3	0	0	0	0.02661	1	7027	7027		49.442	0	1	410900	+		13709	20115	11122	11138	15166	15166					0.02580547708839731
GFGIRIML	8	Unmodified	_GFGIRIML_					0	0	0		L1PA6_dup2267|chr6:2299837-2303022:+|1.5111882528479883|0.3006554191737456|2.33|429.0|195|3|anti-sense	L1PA6_dup2267|chr6:2299837-2303022:+|1.5111882528479883|0.3006554191737456|2.33|429.0|195|3|anti-sense	L1PA6_dup2267|chr6:2299837-2303022:+|1.5111882528479883|0.3006554191737456|2.33|429.0|195|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	453.7651062011719	2	453.765123	905.515694	-0.57153	-0.00025934	-2.8617	-0.0012985	-3.4332	-0.0015579	453.7633825436306	65.951	1.0684	65.951	65.748	66.816	0					52	26	3	0	0	0	0.73288	1	6086	6086		35.201	1.0282	1	1667100			13710	14719	11123	11139	15167	15167					0.05915640613238793
GFGLFMTIMAI	11	Unmodified	_GFGLFMTIMAI_					0	0	0		tr|A0A553SPT0|A0A553SPT0_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_26785PE=3SV=1	tr|A0A553SPT0|A0A553SPT0_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_26785PE=3SV=1	tr|A0A553SPT0|A0A553SPT0_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_26785PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	601.3031005859375	2	600.811413	1199.60827	0.94663	0.00056875	-2.6805	-0.0016105	-1.7338	-0.0010417	600.8105675820076	151.73	1.3975	151.73	151.4	152.8	0					52	32	2	0	0	0	0.025668	1	17729	17729		25.574	2.5316	1	183930			13711	34081	11124	11140	15168	15168					0.016453575644618468
GFGRLLGVL	9	Unmodified	_GFGRLLGVL_					0	0	0			REV__tr|A0A7D6VNZ3|A0A7D6VNZ3_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_20965PE=4SV=1	REV__tr|A0A7D6VNZ3|A0A7D6VNZ3_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_20965PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.2886047363281	2	466.28982	930.565087	-0.23749	-0.00011074	0.092813	4.3278E-05	-0.14468	-6.7463E-05	466.2897232472392	121.61	1.2284	120.26	119.9	121.13	-1.3479					54	23	3	0	0	0	0.22913	1	11457	11457		71.378	2.2849	1	95950	+		13712	31216	11125	11141	15169	15169					0.0970267189372862
GFGRLLGVL	9	Unmodified	_GFGRLLGVL_					0	0	0			REV__tr|A0A7D6VNZ3|A0A7D6VNZ3_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_20965PE=4SV=1	REV__tr|A0A7D6VNZ3|A0A7D6VNZ3_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_20965PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	466.28982	930.565087	1.2589	0.000587	-1.4717	-0.00068626	-0.21286	-9.9254E-05	466.289025223875	121.21	1.6746	120.19	119.8	121.48	-1.0271	-0.035581	-0.00049837	NaN	71.378	59	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102040	+		13713	31216	11125	11141							0.0970267189372862
GFGRNRFLF	9	Unmodified	_GFGRNRFLF_					0	0	0			REV__ENSG00000152977|ENST00000282928|ZIC1	REV__ENSG00000152977|ENST00000282928|ZIC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.31298828125	2	557.30125	1112.58795	1.8899	0.0010533	-0.98962	-0.00055151	0.90033	0.00050175	557.3006754616842	109.99	0.94507	109.99	109.68	110.63	0					36	20	2	0	0	0	0.027462	1	12438	12438		24.203	0	1	830330	+		13714	20315	11126	11142	15170	15170					0.03615691011168565
GFGVPLGLSPT	11	Unmodified	_GFGVPLGLSPT_					0	0	0		ENST00000369902.7_1_10:104391017-104391560:+|nuORF	ENST00000369902.7_1_10:104391017-104391560:+|nuORF	ENST00000369902.7_1_10:104391017-104391560:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.27978515625	2	522.78985	1043.56515	-0.52534	-0.00027464	-4.2617	-0.002228	-4.7871	-0.0025026	522.7881967500716	30.584	0.24866	30.584	30.433	30.682	0					7	4	2	0	0	0	0.02557	1	1171	1171		31.53	12.426	1	38714			13715	10909	11127	11143	15171	15171					0.04510627103036313
GFHARLILF	9	Unmodified	_GFHARLILF_					0	0	0		ENST00000296140.3_1_3:46245112-46245334:-|nuORF	ENST00000296140.3_1_3:46245112-46245334:-|nuORF	ENST00000296140.3_1_3:46245112-46245334:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.7841796875	2	537.316369	1072.61818	0.030531	1.6405E-05	-2.5406	-0.0013651	-2.5101	-0.0013487	537.8165203282703	57.026	0.173	57.026	56.875	57.048	0					5	3	2	0	0	0	0.027462	1	4758	4758		30.504	14.03	1	81494			13716	10130	11128	11144	15172	15172					0.08478049676364208
GFHTREHV	8	Unmodified	_GFHTREHV_					0	0	0			REV__ENSG00000188033|ENST00000311437|ZNF490	REV__ENSG00000188033|ENST00000311437|ZNF490	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.2762145996094	2	491.746308	981.478063	-1.1244	-0.00055292	-4.1553	-0.0020433	-5.2797	-0.0025962	491.7442092162746	27.266	0.19897	27.266	27.142	27.341	0					5	3	2	0	0	0	0.028476	1	780	780		18.324	0	1	15356	+		13717	22684	11129	11145	15173	15173					-0.013417343280025307
GFIEELLML	9	Unmodified	_GFIEELLML_					0	0	0			REV__nc|ENSG00000215474|Q2VWA4-2|SKOR2	REV__nc|ENSG00000215474|Q2VWA4-2|SKOR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.2777709960938	2	532.788461	1063.56237	2.2413	0.0011941	2.9635	0.0015789	5.2048	0.0027731	532.7897995788333	82.714	0.94249	82.714	82.351	83.293	0					47	21	3	0	0	0	0.027462	1	8628	8628		38.806	0	1	4950900	+		13718	29133	11130	11146	15174	15174					0.03313035653877705
GFIKNVSKGI	10	Unmodified	_GFIKNVSKGI_					0	0	0		tr|A0A553SHE2|A0A553SHE2_NIACIProtein-argininekinaseOS=NialliacirculansOX=1397GN=mcsBPE=3SV=1	tr|A0A553SHE2|A0A553SHE2_NIACIProtein-argininekinaseOS=NialliacirculansOX=1397GN=mcsBPE=3SV=1	tr|A0A553SHE2|A0A553SHE2_NIACIProtein-argininekinaseOS=NialliacirculansOX=1397GN=mcsBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	531.81640625	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.762	1	14081	14081		23.523	4.1627	1	166960			13719	33260	11131	11147	15175	15175					0.09498308748334239
GFILQQNII	9	Unmodified	_GFILQQNII_					0	0	0		tr|A0A553SFY4|A0A553SFY4_NIACIHelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09710PE=4SV=1	tr|A0A553SFY4|A0A553SFY4_NIACIHelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09710PE=4SV=1	tr|A0A553SFY4|A0A553SFY4_NIACIHelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09710PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3035278320312	2	523.305667	1044.59678	-2.1227	-0.0011108	-1.8084	-0.00094634	-3.9311	-0.0020572	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.61208	1	11580	11580		30.504	7.4612	1	183010			13720	33094	11132	11148	15176	15176					0.0762661985700106
GFIRLGYNT	9	Unmodified	_GFIRLGYNT_					0	0	0			REV__ENSG00000139044|ENST00000266383|B4GALNT3	REV__ENSG00000139044|ENST00000266383|B4GALNT3	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.7962646484375	2	520.779816	1039.54508	-0.086286	-4.4936E-05	2.9901	0.0015572	2.9038	0.0015122	521.2824751343438	80.851	0.67051	78.529	78.131	78.802	-2.3226					18	12	2	0	0	0	0.027462	1	4412	4412		32.812	8.6097	1	17522	+		13721	19585	11133	11149	15177	15177					0.026888761630971203
GFIVIYIIFS	10	Unmodified	_GFIVIYIIFS_					0	0	0			REV__tr|A0A7D7A2V0|A0A7D7A2V0_9CLOTFlippaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18955PE=4SV=1	REV__tr|A0A7D7A2V0|A0A7D7A2V0_9CLOTFlippaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18955PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	586.3697509765625	2	586.341718	1170.66888	-2.6268	-0.0015402	-4.0419	-0.0023699	-6.6687	-0.0039101	586.3393142476544	93.428	0.8587	91.467	91.228	92.087	-1.9617					25	16	2	0	0	0	0.026642	1	6012	6012		50.025	0.48849	1	95236	+		13722	32553	11134	11150	15178	15178					0.09037534210688136
GFKAYHNKV	9	Unmodified	_GFKAYHNKV_					0	0	0			REV__ENST00000263228.3_1_9:33917988-33918114:+|nuORF	REV__ENST00000263228.3_1_9:33917988-33918114:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.2852172851562	2	532.287808	1062.56106	-4.7761	-0.0025423	-2.1858	-0.0011635	-6.9619	-0.0037058	532.2862801248648	153.11	0.87201	151.68	151.39	152.26	-1.435					46	20	3	0	0	0	0.55588	1	15151	15151		37.159	2.9866	1	140760	+		13723	23993	11135	11151	15179	15179					0.03228582399970037
GFKAYHNKV	9	Unmodified	_GFKAYHNKV_					0	0	0			REV__ENST00000263228.3_1_9:33917988-33918114:+|nuORF	REV__ENST00000263228.3_1_9:33917988-33918114:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	532.287808	1062.56106	-4.6785	-0.0024903	-2.1675	-0.0011538	-6.8461	-0.0036441	532.2862974254812	152.57	0.73068	151.6	151.35	152.08	-0.97301	-0.1364	0.000317	NaN	37.159	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60081	+		13724	23993	11135	11151							0.03228582399970037
GFKLDIKKN	9	Unmodified	_GFKLDIKKN_					0	0	0		ENST00000461225.5_1_17:37235749-37309234:-|nuORF;ENST00000578517.5_1_17:37235696-37309234:-|nuORF	ENST00000461225.5_1_17:37235749-37309234:-|nuORF	ENST00000461225.5_1_17:37235749-37309234:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8167114257812	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.68424	1	11369	11369		21.96	0	1	178650			13725	12174	11136	11152	15180	15180					0.09498308748334239
GFKRAFRWCP	10	Unmodified	_GFKRAFRWCP_					0	0	0		ENSG00000169836|ENST00000304883|TACR3	ENSG00000169836|ENST00000304883|TACR3	ENSG00000169836|ENST00000304883|TACR3	MULTI-MSMS	OvCa9_classI_Rep2	2	423.22186279296875	3	423.222082	1266.64442	-1.145	-0.00048458	0.81567	0.00034521	-0.3293	-0.00013937	423.2223362159068	51.594	2.3754	48.781	48.253	50.629	-2.8129					111	47	4	0	0	0	0.60504	1	3384	3384		41.427	11.876	1	295690			13726	7041	11137	11153	15181	15181					0.021759955762036043
GFLIIVLVM	9	Unmodified	_GFLIIVLVM_					0	0	0		ENSG00000198681|ENST00000356661|MAGEA1	ENSG00000198681|ENST00000356661|MAGEA1	ENSG00000198681|ENST00000356661|MAGEA1	MULTI-MSMS	OvCa9_classI_Rep2	2	502.8135986328125	2	502.814282	1003.61401	-4.4511	-0.0022381	4.0456	0.0020342	-0.40549	-0.00020389	502.8162192928447	153.83	1.4178	153.6	153.28	154.7	-0.22696					88	30	4	0	0	0	0.70973	1	15726	15726		14.664	1.7049	1	684970			13727	8848	11138	11154	15182	15182					0.11234824138443855
GFLLGGFTSI	10	Unmodified	_GFLLGGFTSI_					0	0	0			REV__tr|A0A553SFA3|A0A553SFA3_NIACISugarporterfamilyMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_08500PE=3SV=1	REV__tr|A0A553SFA3|A0A553SFA3_NIACISugarporterfamilyMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_08500PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.82830810546875	2	506.279118	1010.54368	-0.24395	-0.00012351	0.42308	0.0002142	0.17913	9.0691E-05	506.2785063623515	78.524	0.60925	75.708	75.457	76.067	-2.8165					17	12	2	0	0	0	0.026697	1	6339	6339		45.952	1.4209	1	37625	+		13728	29556	11139	11155	15183	15183					0.03883242074334703
GFLLLLPGP	9	Unmodified	_GFLLLLPGP_					0	0	0			REV__ENST00000515594.5_1_6:64345874-64401682:+|nuORF	REV__ENST00000515594.5_1_6:64345874-64401682:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.7822265625	2	463.789121	925.56369	-1.2593	-0.00058406	-3.3903	-0.0015724	-4.6496	-0.0021564	463.7874047255419	52.775	1.0857	49.961	49.492	50.578	-2.8139					40	21	2	0	0	0	0.027462	1	3486	3486		21.702	7.0382	1	116090	+		13729	26999	11140	11156	15184	15184					0.09793037804934102
GFLLRPSPPFP	11	Unmodified	_GFLLRPSPPFP_					0	0	0			REV__ENST00000171111.9_2_19:10610689-10614227:-|nuORF	REV__ENST00000171111.9_2_19:10610689-10614227:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	614.783935546875	2	614.347866	1226.68118	-0.28332	-0.00017406	2.4761	0.0015212	2.1928	0.0013471	614.3493465866358	99.216	0.77766	96.891	96.639	97.417	-2.3253					21	14	2	0	0	0	0.025701	1	8897	8897		11.636	0	1	24434	+		13730	23684	11141	11157	15185	15185					0.0769057067373069
GFLTPLPLTTI	11	Unmodified	_GFLTPLPLTTI_					0	0	0			REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.3314208984375	2	586.849907	1171.68526	0.32125	0.00018852	-2.006	-0.0011772	-1.6847	-0.00098869	586.8499315215215	63.223	0.55385	63.223	63.016	63.57	0					19	13	2	0	0	0	0.025496	1	5698	5698		49.442	24.922	1	324350	+		13731	16911	11142	11158	15186	15186					0.10628615376799644
GFMNDCVCVC	10	Unmodified	_GFMNDCVCVC_					0	0	0			REV__ENST00000561423.2_1_15:101093736-101094444:-|nuORF	REV__ENST00000561423.2_1_15:101093736-101094444:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.7909545898438	2	545.694866	1089.37518	-0.16494	-9.0006E-05	0.23824	0.00013001	0.073303	4.0001E-05	545.6967358792942	30.627	0.14982	30.627	30.532	30.682	0					4	2	2	0	0	0	0.026982	1	1184	1184		23.042	0	1	16632	+		13732	27634	11143	11159	15187	15187					-0.16593390489151716
GFNANRRRSR	10	Unmodified	_GFNANRRRSR_					0	0	0		ENST00000550434.1_1_12:49934893-49937626:+|nuORF;ENSG00000135519|ENST00000257981|KCNH3	ENST00000550434.1_1_12:49934893-49937626:+|nuORF	ENST00000550434.1_1_12:49934893-49937626:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	617.3386840820312	2	617.337218	1232.65988	-0.57745	-0.00035648	3.5615	0.0021987	2.9841	0.0018422	617.3394823991097	24.555	0.45229	24.555	24.386	24.838	0					15	8	3	0	0	0	0.65826	1	460	460		30.318	4.7437	1	74483			13733	4385	11144	11160	15188	15188					0.052859984175938735
GFPHLSPPPPP	11	Unmodified	_GFPHLSPPPPP_					0	0	0			REV__ENSG00000169992|ENST00000302926|NLGN2	REV__ENSG00000169992|ENST00000302926|NLGN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.8477172851562	2	571.803291	1141.59203	-0.70188	-0.00040134	-0.79971	-0.00045727	-1.5016	-0.00085861	571.8027024190118	37.864	1.1809	37.864	37.438	38.619	0					43	25	2	0	0	0	0.025534	1	2094	2094		29.15	10.046	1	83464	+		13734	21506	11145	11161	15189	15189					0.026897357142161127
GFPLGRLRV	9	Unmodified	_GFPLGRLRV_					0	0	0			REV__nc|ENSG00000096746|P31942-2|HNRNPH3	REV__nc|ENSG00000096746|P31942-2|HNRNPH3	MULTI-MSMS	OvCa9_classI_Rep2	2	507.8125305175781	2	507.813993	1013.61343	-3.6205	-0.0018386	2.0308	0.0010312	-1.5898	-0.00080731	507.8149170014654	151.23	0.95454	151.01	150.75	151.7	-0.22697					37	18	3	0	0	0	0.69895	1	15367	15367		18.324	3.4595	1	62074	+		13735	17309	11146	11162	15190	15190					0.10717165533594653
GFPVAIGDPLF	11	Unmodified	_GFPVAIGDPLF_					0	0	0		ENSG00000188011|ENST00000343216|RTP5;ENST00000419912.1_1_2:242813297-242815423:+|nuORF	ENSG00000188011|ENST00000343216|RTP5	ENSG00000188011|ENST00000343216|RTP5	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.8060302734375	2	566.8055	1131.59645	0.42274	0.00023961	-0.46397	-0.00026298	-0.041231	-2.337E-05	566.8051055015428	103.17	3.0728	100.97	100.04	103.12	-2.1994					161	58	4	0	0	0	0.54764	1	9304	9304		49.442	0	1	392830			13736	8446	11147	11163	15191	15191					0.035912001371116276
GFPYVEGKMDG	11	Unmodified	_GFPYVEGKMDG_					0	0	0			REV__nc|ENSG00000009307|O75534-2|CSDE1	REV__nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	OvCa9_classI_Rep2	2	600.2723388671875	2	600.273706	1198.53286	-5.4284	-0.0032585	2.6704	0.001603	-2.7581	-0.0016556	600.275203760979	160.29	1.5488	160.06	159.78	161.33	-0.22697					74	31	3	0	0	0	0.72466	1	16308	16308		19.997	1.6724	1	65724	+		13737	16463	11148	11164	15192	15192					-0.058465283622808784
GFQLDYTV	8	Unmodified	_GFQLDYTV_					0	0	0			REV__ENST00000467942.2_1_3:111831271-111835490:+|nuORF	REV__ENST00000467942.2_1_3:111831271-111835490:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.7530517578125	2	471.732	941.449448	-0.12979	-6.1224E-05	0.69114	0.00032603	0.56135	0.00026481	471.7299427473287	51.043	0.2015	47.87	47.721	47.922	-3.1734					5	3	2	0	0	0	0.028476	1	2975	2975		53.351	0	1	4228	+		13738	18191	11149	11165	15193	15193					-0.023618967478114428
GFQSIPIRL	9	Unmodified	_GFQSIPIRL_					0	0	0		ENST00000465368.5_1_3:100064708-100064834:+|nuORF	ENST00000465368.5_1_3:100064708-100064834:+|nuORF	ENST00000465368.5_1_3:100064708-100064834:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	515.8060302734375	2	515.805834	1029.59712	-0.17166	-8.8541E-05	0.15324	7.904E-05	-0.018421	-9.5016E-06	515.8057522410776	136.15	1.0273	135.92	135.57	136.6	-0.22696					51	20	4	0	0	0	0.51177	1	13517	13517		41.427	2.6205	1	147900			13739	12272	11150	11166	15194	15194					0.08350039576839663
GFQVRRDVD	9	Unmodified	_GFQVRRDVD_					0	0	0			REV__nc|ENSG00000143627|P30613-2|PKLR	REV__nc|ENSG00000143627|P30613-2|PKLR	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.7947387695312	2	546.283254	1090.55196	-0.28564	-0.00015604	3.0852	0.0016854	2.7996	0.0015294	546.2847738968371	61.129	0.81299	61.129	60.772	61.585	0					28	18	3	0	0	0	0.027461	1	5413	5413		32.812	0	1	1056900	+		13740	19859	11151	11167	15195	15195					0.010301890436494432
GFRKLKRRDKQ	11	Unmodified	_GFRKLKRRDKQ_					0	0	0			REV__ENSG00000135773|ENST00000271971|CAPN9	REV__ENSG00000135773|ENST00000271971|CAPN9	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.9595031738281	3	477.960026	1430.85825	-5.9329	-0.0028357	4.3566	0.0020823	-1.5763	-0.00075339	478.2967649500702	159.34	2.8374	157.75	156.72	159.56	-1.5858					174	71	3	0	0	0	0.7257	1	15700	15700		6.3209	0.31984	1	81225	+		13741	19321	11152	11168	15196	15196					0.16005419276575594
GFSISILKRA	10	Unmodified	_GFSISILKRA_					0	0	0			REV__ENSG00000167202|ENST00000300584|TBC1D2B	REV__ENSG00000167202|ENST00000300584|TBC1D2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.3096923828125	2	546.332216	1090.64988	-0.20722	-0.00011321	-2.727	-0.0014898	-2.9342	-0.0016031	546.3303544733692	51.154	0.25493	51.154	51.036	51.291	0					9	5	2	0	0	0	0.027632	1	3913	3913		87.696	10.922	1	141070	+		13742	21262	11153	11169	15197	15197					0.10817997639651367
GFSKFGSK	8	Unmodified	_GFSKFGSK_					0	0	0			REV__tr|A0A7D6VX86|A0A7D6VX86_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07470PE=4SV=1	REV__tr|A0A7D6VX86|A0A7D6VX86_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07470PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	429.2296142578125	2	429.229428	856.444303	-0.40136	-0.00017228	0.15279	6.558E-05	-0.24858	-0.0001067	429.2294484893467	28.962	1.4479	28.962	28.688	30.136	0					62	28	3	0	0	0	0.50747	1	988	988		76.774	18.963	1	2791700	+		13743	31769	11154	11170	15198	15198					0.010338441802446141
GFSLVRKLFP	10	Unmodified	_GFSLVRKLFP_					0	0	0		tr|A0A7D6VS20|A0A7D6VS20_9CLOTPhosphoribosylformylglycinamidinecyclo-ligaseOS=ClostridiumintestinaleOX=36845GN=purMPE=3SV=1	tr|A0A7D6VS20|A0A7D6VS20_9CLOTPhosphoribosylformylglycinamidinecyclo-ligaseOS=ClostridiumintestinaleOX=36845GN=purMPE=3SV=1	tr|A0A7D6VS20|A0A7D6VS20_9CLOTPhosphoribosylformylglycinamidinecyclo-ligaseOS=ClostridiumintestinaleOX=36845GN=purMPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	582.3521728515625	2	582.350409	1162.68626	2.159	0.0012573	0.28486	0.00016589	2.4438	0.0014232	582.3504573785581	90.376	1.6913	90.376	89.891	91.582	0					100	41	4	0	0	0	0.53807	1	9721	9721		49.536	3.5638	1	8376100			13744	34977	11155	11171	15199	15199					0.1114287453635825
GFSNRDVL	8	Unmodified	_GFSNRDVL_					0	0	0		CSMD3|p.G1023Cfs*4|1|0.1|ENSG00000164796|chr8:112650263-112650288|TAGAGCCAATGGAGAAATCATGACCA/-|frameshift_variant;nc|ENSG00000164796|Q7Z407-5|CSMD3;nc|ENSG00000164796|Q7Z407-3|CSMD3;nc|ENSG00000164796|Q7Z407-4|CSMD3;nc|ENSG00000164796|Q7Z407-2|CSMD3;ENSG00000164796|ENST00000297405|CSMD3	CSMD3|p.G1023Cfs*4|1|0.1|ENSG00000164796|chr8:112650263-112650288|TAGAGCCAATGGAGAAATCATGACCA/-|frameshift_variant	CSMD3|p.G1023Cfs*4|1|0.1|ENSG00000164796|chr8:112650263-112650288|TAGAGCCAATGGAGAAATCATGACCA/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	453.25750732421875	2	454.235242	906.45593	0.34669	0.00015748	-0.47659	-0.00021648	-0.1299	-5.9005E-05	454.23493646969905	62.26	0.97478	58.803	58.475	59.45	-3.4577					34	19	2	0	0	0	0.028476	1	4367	4367		19.36	0	1	108420			13745	687	11156	11172	15200	15200					-0.0010395879644420347
GFSQQFELIL	10	Unmodified	_GFSQQFELIL_					0	0	0			REV__ENSG00000187823|ENST00000695839|RTL4	REV__ENSG00000187823|ENST00000695839|RTL4	MULTI-SECPEP	OvCa99_classI_Rep5	1	592.2815551757812	2	591.313689	1180.61282	2.2746	0.001345	-0.98846	-0.00058449	1.2861	0.00076049	591.3117407693911	86.004	0.44007	86.004	85.791	86.231	0					29	10	4	0	0	0	0.027028	1	9076	9076		24.519	0.99649	1	769200	+		13746	22669	11157	11173	15201	15201					0.029742813032498816
GFSSTVSVQI	10	Unmodified	_GFSSTVSVQI_					0	0	0			REV__ENST00000448022.1_1_7:114563557-114563668:+|nuORF	REV__ENST00000448022.1_1_7:114563557-114563668:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.767333984375	2	512.769114	1023.52368	-0.6249	-0.00032043	0.30276	0.00015524	-0.32215	-0.00016519	512.7695931685535	40.041	1.1854	37.087	36.863	38.049	-2.9541					55	22	4	0	0	0	0.46756	1	1687	1687		58.782	0	1	570520	+		13747	25927	11158	11174	15202	15202					0.01285446343717922
GFTLGNVVGMY	11	Oxidation (M)	_GFTLGNVVGM(Oxidation (M))Y_		GFTLGNVVGM(1)Y		GFTLGNVVGM(110)Y	0	0	1		ENST00000515197.2_1_7:135347327-135357590:+|nuORF;ENSG00000243317|ENST00000507606|STMP1	ENST00000515197.2_1_7:135347327-135357590:+|nuORF	ENST00000515197.2_1_7:135347327-135357590:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	587.2843017578125	2	587.284074	1172.5536	0.96965	0.00056946	0.52083	0.00030587	1.4905	0.00087533	587.2841475971469	131.44	1.3593	131.44	130.91	132.27	0					64	28	3	0	0	0	0.053801	1	15246	15246		113.41	58.689	1	363080			13748	9375	11159	11175	15203	15203		281			-0.02577937982596268
GFTLGNVVGMY	11	Unmodified	_GFTLGNVVGMY_					0	0	0		ENST00000515197.2_1_7:135347327-135357590:+|nuORF;ENSG00000243317|ENST00000507606|STMP1	ENST00000515197.2_1_7:135347327-135357590:+|nuORF	ENST00000515197.2_1_7:135347327-135357590:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	579.2875366210938	2	579.286617	1156.55868	0.86468	0.0005009	0.51755	0.00029981	1.3822	0.00080071	579.2869060963922	145.3	1.5353	145.3	144.99	146.52	0					92	31	4	0	0	0	1.4439999999999998E-21	3	16992	16969;16992;17024		239.13	156.82	1	5161200			13749	9375	11159	11176	15204;15205;15206	15205					-0.013336341199646995
GFTLKVKLD	9	Unmodified	_GFTLKVKLD_					0	0	0		tr|A0A7D7AC87|A0A7D7AC87_9CLOTSulfate/molybdateABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18245PE=4SV=1	tr|A0A7D7AC87|A0A7D7AC87_9CLOTSulfate/molybdateABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18245PE=4SV=1	tr|A0A7D7AC87|A0A7D7AC87_9CLOTSulfate/molybdateABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18245PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.8062744140625	2	510.808042	1019.60153	1.3397	0.00068435	-4.036	-0.0020616	-2.6962	-0.0013773	510.8057846593804	138.95	0.3006	137.42	137.19	137.49	-1.5284					8	5	2	0	0	0	0.027462	1	13510	13510		19.997	0	1	5759.3			13750	36224	11160	11177	15207	15207					0.09251503999746546
GFVGSLHAAM	10	Unmodified	_GFVGSLHAAM_					0	0	0		ENST00000597336.1_1_19:40530250-40531035:-|nuORF	ENST00000597336.1_1_19:40530250-40531035:-|nuORF	ENST00000597336.1_1_19:40530250-40531035:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	495.24981689453125	2	495.247295	988.480036	1.2613	0.00062465	0.85996	0.00042589	2.1213	0.0010505	495.2476222924242	123.74	0.97863	122.7	122.41	123.39	-1.0377					41	18	4	0	0	0	0.74484	1	9559	9559		25.45	3.4903	1	133150			13751	14190	11161	11178	15208	15208					-0.014664416344317033
GFVINYNTKN	10	Unmodified	_GFVINYNTKN_					0	0	0		tr|A0A553STL1|A0A553STL1_NIACISH3bdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05300PE=4SV=1	tr|A0A553STL1|A0A553STL1_NIACISH3bdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05300PE=4SV=1	tr|A0A553STL1|A0A553STL1_NIACISH3bdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05300PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	585.2977294921875	2	585.301113	1168.58767	-7.712	-0.0045139	1.0835	0.00063415	-6.6286	-0.0038797	585.3015077710636	157.9	1.5857	156.73	156.12	157.71	-1.1707					60	43	3	0	0	0	0.75313	1	13641	13641		24.519	0.31644	1	24039			13752	34503	11162	11179	15209	15209					0.010122265006430098
GFVLAPIGLV	10	Unmodified	_GFVLAPIGLV_					0	0	0		ENSG00000128602|ENST00000249373|SMO;ENST00000495998.1_1_7:128846153-128848718:+|nuORF	ENSG00000128602|ENST00000249373|SMO	ENSG00000128602|ENST00000249373|SMO	MULTI-MSMS	OvCa9_classI_Rep2	2	493.30517578125	2	493.307678	984.600803	0.47386	0.00023376	-4.359	-0.0021503	-3.8851	-0.0019166	493.30541764477005	114.35	1.2334	114.23	113.96	115.19	-0.11777					61	24	4	0	0	0	0.4178	1	10883	10883		65.897	5.6035	1	230960			13753	3893	11163	11180	15210	15210					0.10788709350708814
GFVTAFIVALI	11	Unmodified	_GFVTAFIVALI_					0	0	0		tr|A0A553SIY5|A0A553SIY5_NIACIUndecaprenyl-diphosphataseOS=NialliacirculansOX=1397GN=uppPPE=3SV=1	tr|A0A553SIY5|A0A553SIY5_NIACIUndecaprenyl-diphosphataseOS=NialliacirculansOX=1397GN=uppPPE=3SV=1	tr|A0A553SIY5|A0A553SIY5_NIACIUndecaprenyl-diphosphataseOS=NialliacirculansOX=1397GN=uppPPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8435668945312	2	575.847167	1149.67978	-4.018	-0.0023138	-2.943	-0.0016947	-6.9609	-0.0040084	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.70148	1	12233	12233		29.15	1.2673	1	445630			13754	33440	11164	11181	15211	15211					0.11092936585009738
GFVVIMVF	8	Unmodified	_GFVVIMVF_					0	0	0			REV__nc|ENSG00000185760|Q9NR82-2|KCNQ5;REV__nc|ENSG00000117013|P56696-2|KCNQ4	REV__nc|ENSG00000185760|Q9NR82-2|KCNQ5	MULTI-SECPEP	OvCa99_classI_Rep5	1	455.7247619628906	2	456.2566	910.498647	0.25156	0.00011477	1.0364	0.00047288	1.288	0.00058765	456.2568055327018	46.511	0.8728	46.511	46.112	46.985	0					36	19	3	0	0	0	0.028476	1	3283	3283		24.504	0	1	327880	+		13755	22528;18332	11165	11182	15212	15212					0.03981720007448075
GFWFIFHHVPT	11	Unmodified	_GFWFIFHHVPT_					0	0	0		ENSG00000103888|ENST00000394685|CEMIP;nc|ENSG00000103888|Q8WUJ3-2|CEMIP	ENSG00000103888|ENST00000394685|CEMIP	ENSG00000103888|ENST00000394685|CEMIP	MULTI-SECPEP	OvCa9_classI_Rep2	2	462.93701171875	3	463.236385	1386.68733	-0.37691	-0.0001746	1.2876	0.00059648	0.91074	0.00042189	463.2368752215565	46.052	0.64602	43.342	43.099	43.745	-2.7097					18	12	2	0	0	0	0.026042	1	2695	2695		14.694	0	1	23736			13756	2343	11166	11183	15213	15213					0.009450889052459388
GFYLLLFF	8	Unmodified	_GFYLLLFF_					0	0	0			REV__tr|A0A553SMJ0|A0A553SMJ0_NIACIDUF1048domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22680PE=4SV=1	REV__tr|A0A553SMJ0|A0A553SMJ0_NIACIDUF1048domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22680PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.9542541503906	2	510.283672	1018.55279	-2.1961	-0.0011206	-2.4725	-0.0012617	-4.6685	-0.0023823	510.2821710537949	49.211	0.83082	46.069	45.832	46.663	-3.1416					25	15	2	0	0	0	0.028476	1	2757	2757		16.705	0	1	44850	+		13757	30335	11167	11184	15214	15214					0.04425635430652619
GFYLTIIGIL	10	Unmodified	_GFYLTIIGIL_					0	0	0		ENSG00000124818|ENST00000371211|OPN5	ENSG00000124818|ENST00000371211|OPN5	ENSG00000124818|ENST00000371211|OPN5	MULTI-SECPEP	OvCa9_classI_Rep2	2	556.2964477539062	2	555.333893	1108.65323	-1.5749	-0.00087458	1.5771	0.00087582	0.0022448	1.2466E-06	555.3346436785325	145.52	1.091	145.3	144.98	146.07	-0.22697					34	21	2	0	0	0	0.027084	1	14724	14724		31.955	6.3808	1	13913			13758	3683	11168	11185	15215	15215					0.10325247693663187
GFYRIPVL	8	Unmodified	_GFYRIPVL_					0	0	0		nc|ENSG00000176884|Q05586-2|GRIN1;nc|ENSG00000176884|Q05586-3|GRIN1;nc|ENSG00000176884|Q05586-7|GRIN1;nc|ENSG00000176884|Q05586-4|GRIN1;ENSG00000176884|ENST00000371561|GRIN1;nc|ENSG00000176884|Q05586-6|GRIN1;nc|ENSG00000176884|Q05586-5|GRIN1	nc|ENSG00000176884|Q05586-2|GRIN1	nc|ENSG00000176884|Q05586-2|GRIN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.7828063964844	2	482.78437	963.554188	-0.56756	-0.00027401	0.26875	0.00012975	-0.29881	-0.00014426	482.7843636752227	121.17	1.9803	119.83	119.49	121.47	-1.3479					106	38	5	0	0	0	0.74361	1	11474	11474		29.842	1.5873	1	662880			13759	7632	11169	11186	15216	15216					0.07095269519413705
GGADKRLR	8	Unmodified	_GGADKRLR_					0	0	0		ENSG00000026297|ENST00000508775|RNASET2;ENST00000366855.10_1_6:167369102-167369700:-|nuORF;nc|ENSG00000026297|O00584-2|RNASET2;chr6:166946739-166956097|282|19.72|0.65|4.93|-|1|RNASET2,RNASET2|1	ENSG00000026297|ENST00000508775|RNASET2	ENSG00000026297|ENST00000508775|RNASET2	MULTI-SECPEP	OvCa99_classI_Rep5	1	436.2491760253906	2	436.756675	871.498798	0.59046	0.00025789	3.9376	0.0017198	4.528	0.0019776	436.7581322847608	51.016	0.60852	51.016	50.64	51.248	0					16	13	2	0	0	0	0.028476	1	3911	3911		29.15	0	1	114000			13760	1050	11170	11187	15217	15217					0.0579085605166938
GGADSKNFPLR	11	Unmodified	_GGADSKNFPLR_					0	0	0		nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851|MICAL2	nc|ENSG00000133816|O94851|MICAL2	MULTI-MSMS	OvCa99_classI_Rep5	1	581.3026123046875	2	581.304187	1160.59382	-1.0206	-0.00059327	-2.8149	-0.0016363	-3.8355	-0.0022296	581.302882190631	43.414	1.0665	43.414	43.014	44.08	0					81	24	6	0	0	0	0.16138	1	2878	2878		85.161	2.8558	1	10876000			13761	15023	11171	11188	15218	15218					0.01994744732178333
GGAGAGGW	8	Unmodified	_GGAGAGGW_					0	0	0			REV__ENST00000463727.1_1_10:129868414-129869560:+|nuORF	REV__ENST00000463727.1_1_10:129868414-129869560:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	632.3096313476562	1	632.2787	631.271424	2.6592	0.0016814	-2.3341	-0.0014758	0.3251	0.00020556	632.2771833166181	84.831	0.69888	84.831	84.512	85.211	0					32	16	3	0	0	0	0.028476	1	8894	8894		10.185	0	1	1041600	+		13762	26134	11172	11189	15219	15219					-0.058961021563391114
GGAGAGGW	8	Unmodified	_GGAGAGGW_					0	0	0			REV__ENST00000463727.1_1_10:129868414-129869560:+|nuORF	REV__ENST00000463727.1_1_10:129868414-129869560:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		1	632.2787	631.271424	-1.102	-0.00069678	-1.3359	-0.00084468	-2.4379	-0.0015415	632.2776757645535	87.502	1.2574	84.875	84.448	85.706	-2.6269	0.022167	0.00040037	NaN	5.0869	44	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206070	+		13763	26134	11172	11189							-0.058961021563391114
GGAGGGGF	8	Unmodified	_GGAGGGGF_					0	0	0		CON__Q5XQN5	CON__Q5XQN5	CON__Q5XQN5	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.8099365234375	1	579.252151	578.244875	-0.50545	-0.00029278	0.68206	0.00039508	0.17661	0.0001023	579.2523124434905	47.239	0.30318	47.239	47.076	47.379	0					9	6	2	0	0	0	0.028476	1	3370	3370		16.705	6.5202	1	84542		+	13764	653	11173	11190	15220	15220					-0.061117910476696125
GGAGGGGG	8	Unmodified	_GGAGGGGG_					0	0	0		ENSG00000006047|ENST00000007699|YBX2;chr17:81869957-81871207|88|11.97|0.22|5.78|-|2|ARHGDIA,None|1;sp|F5HDQ6|DNBI_HCMVMMajorDNA-bindingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=DBPPE=3SV=1;ENSG00000130449|ENST00000252744|ZSWIM6;nc|ENSG00000011114|Q9P203-5|BTBD7;ENSG00000171873|ENST00000379453|ADRA1D;ENSG00000198914|ENST00000361360|POU3F3;ENSG00000104967|ENST00000263257|NOVA2;ENSG00000182759|ENST00000333480|MAFA;ENSG00000128709|ENST00000249499|HOXD9;ENSG00000138083|ENST00000260653|SIX3;ENSG00000197245|ENST00000374268|FAM110D;SIX3|p.W253Yfs*11|1|0.2|ENSG00000138083|chr2:44942861-44942862|-/ATCAACAAACACGAGTCGATCCTGC|frameshift_variant;ENST00000219611.6_1_16:586082-597374:+|nuORF;ENST00000562370.5_1_16:583983-597374:+|nuORF;ENST00000421828.6_2_9:34665013-34665702:-|nuORF;sp|P17147|DNBI_HCMVAMajorDNA-bindingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=DBPPE=1SV=1;ENSG00000122691|ENST00000242261|TWIST1;nc|ENSG00000136141|Q9Y2L9-2|LRCH1;nc|ENSG00000136141|Q9Y2L9|LRCH1;ENSG00000136141|ENST00000389797|LRCH1;LRCH1|p.E457Vfs*53|1|0.03|ENSG00000136141|chr13:46701176-46701177|-/T|frameshift_variant;ENST00000443945.6_1_13:47127426-47279607:+|nuORF;nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000126464|ENST00000418929|PRR12;ENSG00000125970|ENST00000246194|RALY;nc|ENSG00000125970|Q9UKM9-2|RALY;ENST00000481580.1_1_20:32664521-32665129:+|nuORF;nc|ENSG00000130224|Q5VUJ6-2|LRCH2;ENSG00000130224|ENST00000317135|LRCH2;ENSG00000188779|ENST00000380035|SKOR1;ENSG00000043355|ENST00000376335|ZIC2;ENSG00000142408|ENST00000270458|CACNG8;RUSC2|p.P1138Vfs*6|1|0.05|ENSG00000198853|chr9:35560051-35560052|-/GT|frameshift_variant;ENSG00000198853|ENST00000361226|RUSC2;ENSG00000253293|ENST00000283921|HOXA10;ENSG00000275023|ENST00000621332|MLLT6;sp|Q6SW37|EP84_HCMVMEarlyphosphoproteinp84OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL112/UL113PE=3SV=1;sp|P17151|EP84_HCMVAEarlyphosphoproteinp84OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL112/UL113PE=1SV=2	ENSG00000006047|ENST00000007699|YBX2;ENSG00000122691|ENST00000242261|TWIST1;nc|ENSG00000136141|Q9Y2L9-2|LRCH1;REV__ENSG00000182759|ENST00000333480|MAFA;nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000125970|ENST00000246194|RALY;nc|ENSG00000130224|Q5VUJ6-2|LRCH2;ENSG00000188779|ENST00000380035|SKOR1;ENSG00000043355|ENST00000376335|ZIC2;ENSG00000142408|ENST00000270458|CACNG8;RUSC2|p.P1138Vfs*6|1|0.05|ENSG00000198853|chr9:35560051-35560052|-/GT|frameshift_variant;ENSG00000253293|ENST00000283921|HOXA10;ENSG00000275023|ENST00000621332|MLLT6;REV__nc|ENSG00000151322|Q8IXF0-4|NPAS3;REV__KHSRP|p.E367Afs*119|1|0.05|ENSG00000088247|chr19:6417069-6417070|-/G|frameshift_variant;REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8;REV__nc|ENSG00000130224|Q5VUJ6-2|LRCH2;REV__ENSG00000130449|ENST00000252744|ZSWIM6;REV__ENSG00000156026|ENST00000373053|MCU;REV__ENSG00000169840|ENST00000302945|GSX1;REV__ENSG00000275023|ENST00000621332|MLLT6;sp|Q6SW37|EP84_HCMVMEarlyphosphoproteinp84OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL112/UL113PE=3SV=1	nc|ENSG00000130224|Q5VUJ6-2|LRCH2	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.25897216796875	1	489.205201	488.197925	-0.45767	-0.00022389	2.1636	0.0010584	1.7059	0.00083455	489.2062256677923	43.249	0.46456	43.249	43.1	43.565	0					15	10	2	0	0	0	0.028476	1	2866	2866		10.185	0	1	237040			13765	3969;18931;4460;3757;1128;18946;9565;32906;3784;8500;4970;15909;21487;20459;17726;8890;9427;23623;22316;3548;17174;869	11174	11191	15221	15221					-0.06664650598816024
GGAGKGPA	8	Unmodified	_GGAGKGPA_					0	0	0		ARID1A-NUDC|2|fusion;ARID1A-NUDC|1|fusion;ARID1A-FAM76A|1|fusion;ARID1A-FAM76A|2|fusion;ARID1A-FAM76A|5|fusion;ARID1A-FAM76A|3|fusion;ARID1A-FAM76A|4|fusion;ARID1A|p.W1073Mfs*32|1|0.43|ENSG00000117713|chr1:26771130-26771131|-/A|frameshift_variant;ARID1A|p.M1673Pfs*22|1|0.07|ENSG00000117713|chr1:26775597-26775604|GTAATGAT/-|frameshift_variant;nc|ENSG00000117713|O14497-2|ARID1A;ENSG00000117713|ENST00000324856|ARID1A	ARID1A-NUDC|2|fusion	ARID1A-NUDC|2|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	613.7044677734375	1	614.32565	613.318374	1.7579	0.0010799	1.6287	0.0010006	3.3866	0.0020805	614.3246914278532	129.7	0.36981	129.7	129.45	129.82	0					10	7	2	0	0	0	0.028476	1	15051	15051		14.664	0	1	38836			13766	113	11175	11192	15222	15222					-0.003752426051960356
GGAGPASG	8	Unmodified	_GGAGPASG_					0	0	0		nc|ENSG00000213390|Q14CB8-6|ARHGAP19;nc|ENSG00000213390|Q14CB8-3|ARHGAP19;ENSG00000213390|ENST00000358531|ARHGAP19;nc|ENSG00000213390|Q14CB8-2|ARHGAP19;ENST00000493068.2_1_10:99025521-99052393:-|nuORF;nc|ENSG00000213390|Q14CB8-7|ARHGAP19;nc|ENSG00000213390|Q14CB8-5|ARHGAP19	nc|ENSG00000213390|Q14CB8-6|ARHGAP19;nc|ENSG00000213390|Q14CB8-5|ARHGAP19	nc|ENSG00000213390|Q14CB8-6|ARHGAP19	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.7925415039062	1	573.262716	572.255439	2.3213	0.0013307	0.73151	0.00041934	3.0528	0.0017501	573.2616293528317	86.29	0.47954	86.29	86.073	86.553	0					14	11	2	0	0	0	0.028476	1	9071	9071		8.2313	0	1	257990			13767	9126;15306	11176	11193	15223	15223					-0.04779808393232088
GGAGPGGV	8	Unmodified	_GGAGPGGV_					0	0	0		ENST00000527368.5_1_11:66529588-66529918:+|nuORF	ENST00000527368.5_1_11:66529588-66529918:+|nuORF	ENST00000527368.5_1_11:66529588-66529918:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	571.2847900390625	1	571.283451	570.276175	1.324	0.00075639	-2.5588	-0.0014618	-1.2348	-0.0007054	571.2819117147202	103.16	0.83595	103.16	102.81	103.64	0					53	19	4	0	0	0	0.75058	1	11513	11513		16.705	0	1	3980000			13768	13233	11177	11194	15224	15224					-0.0261521801356821
GGAGPYGGAII	11	Unmodified	_GGAGPYGGAII_					0	0	0			REV__tr|A0A7D7A2P8|A0A7D7A2P8_9CLOTAminotransferaseclassIII-foldpyridoxalphosphate-dependentenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_18120PE=3SV=1	REV__tr|A0A7D7A2P8|A0A7D7A2P8_9CLOTAminotransferaseclassIII-foldpyridoxalphosphate-dependentenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_18120PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	466.5395202636719	2	466.745442	931.476331	-0.88655	-0.00041379	0.53305	0.0002488	-0.3535	-0.000165	466.7457141327345	44.238	0.31218	44.238	44.038	44.35	0					11	6	2	0	0	0	0.025357	1	2958	2958		17.365	0	1	159540	+		13769	32549	11178	11195	15225	15225					0.00785211863387758
GGAGSPQVILV	11	Unmodified	_GGAGSPQVILV_					0	0	0		nc|ENSG00000130856|Q9UL36|ZNF236;ENSG00000130856|ENST00000320610|ZNF236;ENST00000543926.6_1_18:74647944-74680292:+|nuORF	nc|ENSG00000130856|Q9UL36|ZNF236	nc|ENSG00000130856|Q9UL36|ZNF236	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.2889404296875	2	499.287474	996.560395	-0.4466	-0.00022298	0.11968	5.9756E-05	-0.32692	-0.00016323	499.2873122359563	58.517	1.9379	55.125	54.701	56.639	-3.392					78	38	4	0	0	0	0.16138	1	3863	3863		85.161	7.8432	1	357520			13770	4022	11179	11196	15226	15226					0.06197742960284813
GGAGVGSM	8	Unmodified	_GGAGVGSM_					0	0	0		ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	ENSG00000105372|ENST00000598742|RPS19	MULTI-SECPEP	OvCa99_classI_Rep5	1	636.2581176757812	1	635.281737	634.27446	2.8159	0.0017889	3.6508	0.0023193	6.4666	0.0041081	635.2824076657666	121.58	0.6044	121.58	121.29	121.9	0					22	12	3	0	0	0	0.028476	1	13985	13985		4.3163	2.6972	1	78990			13771	2447	11180	11197	15227	15227					-0.0573059509383711
GGALGGGA	8	Unmodified	_GGALGGGA_					0	0	0			REV__ENST00000389224.7_1_16:2588309-2588624:+|nuORF	REV__ENST00000389224.7_1_16:2588309-2588624:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	559.3341064453125	1	559.283451	558.276175	-0.010324	-5.7743E-06	-4.113	-0.0023004	-4.1234	-0.0023061	559.2775466716922	104.89	0.19464	104.31	104.22	104.41	-0.57639					5	3	2	0	0	0	0.028476	1	9724	9724		24.504	0	1	8825.9	+		13772	25226	11181	11198	15228	15228					-0.020632180135748968
GGALLARDRP	10	Unmodified	_GGALLARDRP_					0	0	0			REV__ENSG00000151348|ENST00000533608|EXT2	REV__ENSG00000151348|ENST00000533608|EXT2	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.8544311523438	2	513.296165	1024.57778	2.6558	0.0013632	3.1989	0.001642	5.8547	0.0030052	513.2975479576679	97.875	0.63603	97.875	97.611	98.247	0					42	14	4	0	0	0	0.026606	1	10742	10742		44.377	0	1	1997600	+		13773	20224	11182	11199	15229	15229					0.06647083285952249
GGAPCELVHL	10	Carbamidomethyl (C)	_GGAPC(Carbamidomethyl (C))ELVHL_	GGAPC(1)ELVHL		GGAPC(56)ELVHL		0	1	0			REV__ENST00000536901.1_1_4:1720289-1722919:-|nuORF	REV__ENST00000536901.1_1_4:1720289-1722919:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	526.7628784179688	2	526.763309	1051.51206	-1.1915	-0.00062765	1.0027	0.00052819	-0.18881	-9.946E-05	526.7636529760721	120.92	1.9767	120.72	120.16	122.14	-0.19718					97	39	4	0	0	0	0.49049	1	11667	11667		55.504	7.5886	1	267620	+		13774	24270	11183	11200	15230	15230	288				-0.011630739512838772
GGAPGGGG	8	Unmodified	_GGAPGGGG_					0	0	0			REV__nc|ENSG00000108352|Q9UHV5|RAPGEFL1;REV__ENSG00000145743|ENST00000542267|FBXL17;REV__ENSG00000105722|ENST00000222329|ERF	REV__ENSG00000145743|ENST00000542267|FBXL17	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.315673828125	1	529.236501	528.229225	-0.65049	-0.00034426	-3.2034	-0.0016954	-3.8539	-0.0020396	529.2346703415097	102.5	0.46909	100.98	100.79	101.26	-1.5211					12	8	2	0	0	0	0.028476	1	7032	7032		5.0869	0	1	15419	+		13775	19982;17880;17755	11184	11201	15231	15231					-0.05376077564710613
GGAVGDLAGFV	11	Unmodified	_GGAVGDLAGFV_					0	0	0		tr|A0A553SL93|A0A553SL93_NIACI3-dehydroquinatesynthaseOS=NialliacirculansOX=1397GN=aroBPE=3SV=1	tr|A0A553SL93|A0A553SL93_NIACI3-dehydroquinatesynthaseOS=NialliacirculansOX=1397GN=aroBPE=3SV=1	tr|A0A553SL93|A0A553SL93_NIACI3-dehydroquinatesynthaseOS=NialliacirculansOX=1397GN=aroBPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	481.7486267089844	2	481.750724	961.486896	-0.32124	-0.00015476	-3.3078	-0.0015935	-3.629	-0.0017483	481.74910141335675	35.361	0.65012	35.361	35.149	35.799	0					38	13	4	0	0	0	0.64273	1	1764	1764		40.778	0	1	1655500			13776	33699	11185	11202	15232	15232					0.0046119451779986775
GGCRVPSF	8	Unmodified	_GGCRVPSF_					0	0	0			REV__WEE1|p.L243Yfs*20|1|0.04|ENSG00000166483|chr11:9576038-9576039|-/ATGTAACTGAACAATGGGCCTCGTC|frameshift_variant	REV__WEE1|p.L243Yfs*20|1|0.04|ENSG00000166483|chr11:9576038-9576039|-/ATGTAACTGAACAATGGGCCTCGTC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	411.8844909667969	2	411.69998	821.385408	-1.1828	-0.00048696	1.57	0.00064639	0.38724	0.00015943	411.700373175232	49.174	0.41705	46.033	45.884	46.301	-3.1416					9	7	2	0	0	0	0.028476	1	2739	2739		18.324	6.8134	1	7370.6	+		13777	21200	11186	11203	15233	15233					-0.03242955385746882
GGDEEYCQ	8	Unmodified	_GGDEEYCQ_					0	0	0			REV__ENSG00000198471|ENST00000358241|RTP2	REV__ENSG00000198471|ENST00000358241|RTP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.7626037597656	2	450.655632	899.296712	-0.049759	-2.2424E-05	-4.2774	-0.0019276	-4.3271	-0.0019501	450.6544461854961	58.953	0.30763	58.953	58.812	59.12	0					9	7	2	0	0	0	0.028476	1	5023	5023		37.159	10.363	1	131600	+		13778	23020	11187	11204	15234	15234					-0.156964602067319
GGEEDDEVDL	10	Unmodified	_GGEEDDEVDL_					0	0	0			REV__ENSG00000011243|ENST00000397410|AKAP8L	REV__ENSG00000011243|ENST00000397410|AKAP8L	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.3186645507812	2	539.214566	1076.41458	1.3708	0.00073918	1.867	0.0010067	3.2379	0.0017459	539.2154641524602	123.21	0.74223	123.21	122.95	123.69	0					37	15	3	0	0	0	0.026723	1	14240	14240		79.451	13.022	1	625230	+		13779	16485	11188	11205	15235	15235					-0.1205722913707632
GGEGGGRWRLM	11	Oxidation (M)	_GGEGGGRWRLM(Oxidation (M))_		GGEGGGRWRLM(1)		GGEGGGRWRLM(91)	0	0	1		ENST00000551915.5_1_12:83081037-83081439:+|nuORF	ENST00000551915.5_1_12:83081037-83081439:+|nuORF	ENST00000551915.5_1_12:83081037-83081439:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	596.284423828125	2	596.288014	1190.56147	-0.30495	-0.00018184	0.24983	0.00014897	-0.055119	-3.2867E-05	596.2881397370411	54.522	0.73029	54.522	54.293	55.023	0					31	16	3	0	0	0	0.13051	1	4412	4412		90.601	12.337	1	1396400			13780	13605	11189	11206	15236	15236		351			-0.026183659424759753
GGEPIAGGAQL	11	Unmodified	_GGEPIAGGAQL_					0	0	0			REV__ENST00000552723.1_1_17:3591958-3593753:-|nuORF	REV__ENST00000552723.1_1_17:3591958-3593753:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.25439453125	2	485.253631	968.49271	-0.35802	-0.00017373	0.071183	3.4542E-05	-0.28684	-0.00013919	485.25359607245366	62.791	1.4583	59.333	58.715	60.174	-3.4577					57	29	2	0	0	0	0.16138	1	4391	4391		85.161	2.8558	1	1014200	+		13781	27472	11190	11207	15237	15237					0.007202930294738508
GGEWPPHIIQ	10	Unmodified	_GGEWPPHIIQ_					0	0	0			REV__nc|ENSG00000204681|Q9UBS5-5|GABBR1	REV__nc|ENSG00000204681|Q9UBS5-5|GABBR1	MULTI-MSMS	OvCa99_classI_Rep5	1	567.2901611328125	2	567.290548	1132.56654	2.0848	0.0011827	-1.6824	-0.00095442	0.40234	0.00022825	567.2892613386879	128.5	0.65685	128.5	128.14	128.79	0					30	13	3	0	0	0	0.35465	1	14890	14890		74.255	16.444	1	275950	+		13782	23178	11191	11208	15238	15238					0.005562611917866889
GGFNGSLRV	9	Unmodified	_GGFNGSLRV_					0	0	0		nc|ENSG00000146021|Q9UH77-3|KLHL3;nc|ENSG00000109466|O95198-3|KLHL2;nc|ENSG00000146021|Q9UH77-2|KLHL3;ENSG00000146021|ENST00000309755|KLHL3;ENSG00000109466|ENST00000226725|KLHL2;nc|ENSG00000109466|O95198-2|KLHL2	nc|ENSG00000146021|Q9UH77-3|KLHL3	nc|ENSG00000146021|Q9UH77-3|KLHL3	MULTI-MSMS	OvCa99_classI_Rep5	1	453.74468994140625	2	453.743234	905.471915	1.0081	0.00045743	0.49414	0.00022421	1.5023	0.00068165	453.7432826166873	74.464	0.7852	74.464	74.095	74.88	0					39	19	3	0	0	0	0.22621	1	7370	7370		71.877	10.906	1	3143800			13783	2714	11192	11209	15239	15239					0.015397474404721834
GGFRILAEP	9	Unmodified	_GGFRILAEP_					0	0	0			REV__ENSG00000205359|ENST00000506729|SLCO6A1	REV__ENSG00000205359|ENST00000506729|SLCO6A1	MULTI-MSMS	OvCa9_classI_Rep3	3	480.27606201171875	2	480.269084	958.523616	-0.67122	-0.00032236	0.91605	0.00043995	0.24483	0.00011758	480.26930869760986	91.546	1.1594	89.521	88.93	90.089	-2.0241					69	22	4	0	0	0	0.51865	1	5762	5762		40.778	1.972	1	423390	+		13784	23213	11193	11210	15240	15240					0.04269491134380132
GGGAAAKP	8	Unmodified	_GGGAAAKP_					0	0	0			REV__ENST00000287878.8_2_7:151573712-151573856:-|nuORF	REV__ENST00000287878.8_2_7:151573712-151573856:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	629.3233642578125	1	628.341301	627.334024	2.0594	0.001294	0.2209	0.0001388	2.2803	0.0014328	628.3459188683308	129.2	0.47006	129.2	128.88	129.35	0					16	9	3	0	0	0	0.028476	1	14968	14968		8.8223	0	1	30688	+		13785	24145	11194	11211	15241	15241					0.0054504391184764245
GGGAFPGG	8	Unmodified	_GGGAFPGG_					0	0	0		ENST00000593845.5_1_19:15510111-15529746:-|nuORF;nc|ENSG00000011243|Q9ULX6-2|AKAP8L;ENSG00000011243|ENST00000397410|AKAP8L;ENST00000598292.1_1_19:15511553-15512083:-|nuORF;ENST00000594893.5_1_19:15511079-15529746:-|nuORF	ENST00000593845.5_1_19:15510111-15529746:-|nuORF	ENST00000593845.5_1_19:15510111-15529746:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	618.8525390625	1	619.283451	618.276175	-0.38345	-0.00023746	0.58063	0.00035957	0.19718	0.00012211	619.2835442716467	68.659	0.62083	68.659	68.398	69.019	0					21	14	2	0	0	0	0.028476	1	6462	6462		16.705	0	1	293450			13786	958	11195	11212	15242	15242					-0.04823218013564201
GGGAGAGK	8	Unmodified	_GGGAGAGK_					0	0	0			REV__nc|ENSG00000115935|O43516-4|WIPF1	REV__nc|ENSG00000115935|O43516-4|WIPF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.8363037109375	1	574.29435	573.287074	1.9186	0.0011019	-3.205	-0.0018406	-1.2864	-0.00073877	574.2900812924689	85.067	0.45192	85.067	84.8	85.252	0					12	10	2	0	0	0	0.028476	1	8914	8914		26.796	6.3143	1	164110	+		13787	18278	11196	11213	15243	15243					-0.016638156392900783
GGGAKGCG	8	Unmodified	_GGGAKGCG_					0	0	0		ENST00000264501.8_2_4:123073488-123075213:+|nuORF	ENST00000264501.8_2_4:123073488-123075213:+|nuORF	ENST00000264501.8_2_4:123073488-123075213:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	605.824462890625	1	606.266421	605.259145	1.8829	0.0011416	4.3366	0.0026292	6.2196	0.0037707	606.2685753892222	91.305	0.36137	91.305	91.098	91.459	0					10	8	2	0	0	0	0.028476	1	9834	9834		13.775	4.953	1	108500			13788	9932	11197	11214	15244	15244					-0.059274618910194476
GGGETGQRLLS	11	Unmodified	_GGGETGQRLLS_					0	0	0		nc|ENSG00000167680|Q9H3T3-3|SEMA6B;ENSG00000167680|ENST00000586582|SEMA6B	nc|ENSG00000167680|Q9H3T3-3|SEMA6B	nc|ENSG00000167680|Q9H3T3-3|SEMA6B	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.7806396484375	2	537.780544	1073.54654	-0.6015	-0.00032347	0.073829	3.9704E-05	-0.52767	-0.00028377	537.7807214653701	56.69	1.2712	53.396	53.07	54.341	-3.2944					61	24	4	0	0	0	0.28332	1	3638	3638		69.628	5.4204	1	750450			13789	6831	11198	11215	15245	15245					0.012704654611980004
GGGGAGGP	8	Unmodified	_GGGGAGGP_					0	0	0		ENSG00000103404|ENST00000219689|USP31;USP31|p.S289Ffs*3|1|0.08|ENSG00000103404|chr16:23106302-23106303|-/AT|frameshift_variant;nc|ENSG00000005007|Q92900|UPF1;ENSG00000005007|ENST00000262803|UPF1	REV__LRCH1|p.E457Vfs*53|1|0.03|ENSG00000136141|chr13:46701176-46701177|-/T|frameshift_variant;ENSG00000103404|ENST00000219689|USP31;nc|ENSG00000005007|Q92900|UPF1;REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I	nc|ENSG00000005007|Q92900|UPF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.319091796875	1	529.236501	528.229225	-0.33381	-0.00017666	0.52979	0.00028038	0.19598	0.00010372	529.2369067011184	71.329	0.39812	71.329	71.15	71.548	0					12	9	2	0	0	0	0.028476	1	6875	6875		10.185	5.0979	1	211390			13790	28626;2315;841;17404	11199	11216	15246	15246					-0.05376077564710613
GGGGCGGG	8	Unmodified	_GGGGCGGG_					0	0	0		nc|ENSG00000130224|Q5VUJ6-2|LRCH2;ENSG00000130224|ENST00000317135|LRCH2	nc|ENSG00000130224|Q5VUJ6-2|LRCH2;REV__ENSG00000171044|ENST00000416569|XKR6;REV__nc|ENSG00000130224|Q5VUJ6-2|LRCH2;REV__ENSG00000145743|ENST00000542267|FBXL17;REV__nc|ENSG00000203706|Q5TG53|SERTAD4-AS1	nc|ENSG00000130224|Q5VUJ6-2|LRCH2	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.8303833007812	1	521.177272	520.169995	0.4982	0.00025965	1.8162	0.00094658	2.3144	0.0012062	521.1782974391964	106.12	0.57376	104.78	104.67	105.24	-1.3482					14	10	2	0	0	0	0.028476	1	7500	7500		0	0	1	7374.7			13791	3969;18931;19982;21586;29093	11200	11217	15247	15247					-0.10928296850545394
GGGGCLLG	8	Unmodified	_GGGGCLLG_					0	0	0		ENST00000474017.5_1_22:32017296-32017569:-|nuORF;ENST00000460723.5_1_22:32015600-32017569:-|nuORF	ENST00000474017.5_1_22:32017296-32017569:-|nuORF	ENST00000474017.5_1_22:32017296-32017569:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	632.861328125	1	633.302472	632.295196	1.1631	0.00073662	2.7235	0.0017248	3.8866	0.0024614	633.3072210135249	152.71	0.84804	152.71	152.55	153.4	0					29	19	2	0	0	0	0.028476	1	17929	17929		10.185	0	1	110530			13792	12155	11201	11218	15248	15248					-0.035660047141618634
GGGGGAAK	8	Unmodified	_GGGGGAAK_					0	0	0		ENST00000264088.8_1_19:6459571-6459757:-|nuORF	ENST00000264088.8_1_19:6459571-6459757:-|nuORF	ENST00000264088.8_1_19:6459571-6459757:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	574.295166015625	1	574.29435	573.287074	1.0292	0.00059106	1.8351	0.0010539	2.8643	0.001645	574.2950515753035	131.22	0.42537	131.22	130.96	131.39	0					13	8	2	0	0	0	0.73871	1	15247	15247		1.619	0	1	178930			13793	9927	11202	11219	15249	15249					-0.016638156392900783
GGGGGGAR	8	Unmodified	_GGGGGGAR_					0	0	0		ENST00000478691.5_1_1:23670744-23670828:-|nuORF;ENSG00000083544|ENST00000377881|TDRD3;nc|ENSG00000083544|Q9H7E2|TDRD3;nc|ENSG00000083544|Q9H7E2-2|TDRD3;ENST00000298966.2_11:93232511-93276567:-|nuORF;ENSG00000135363|ENST00000257818|LMO2;ENST00000430430.5_1_8:81398555-81399056:+|nuORF;ENST00000484389.6_1_13:61058882-61083684:+|nuORF;ENST00000441740.6_2_19:47920605-47922558:-|nuORF;ENST00000545654.5_1_11:95522396-95522864:-|nuORF	REV__ENSG00000196850|ENST00000354300|PPTC7;ENST00000545654.5_1_11:95522396-95522864:-|nuORF	ENST00000545654.5_1_11:95522396-95522864:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.310302734375	1	588.284848	587.277572	0.92128	0.00054197	3.4027	0.0020017	4.3239	0.0025437	588.2871644327638	81.512	0.40398	81.512	81.372	81.776	0					10	9	2	0	0	0	0.028476	1	8422	8422		8.8223	0	1	275900			13794	22869;13523	11203	11220	15250	15250					-0.032575839248124794
GGGGGGKV	8	Unmodified	_GGGGGGKV_					0	0	0			REV__nc|ENSG00000140279|Q9NRD8|DUOX2	REV__nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	587.3184204101562	1	588.31	587.302724	-0.75786	-0.00044586	-0.34523	-0.0002031	-1.1031	-0.00064896	588.3100812508919	63.379	0.3387	59.904	59.625	59.964	-3.475					10	6	2	0	0	0	0.028476	1	4456	4456		4.6817	0	1	69119	+		13795	19658	11204	11221	15251	15251					-0.007435291222464002
GGGGGGKV	8	Unmodified	_GGGGGGKV_					0	0	0			REV__nc|ENSG00000140279|Q9NRD8|DUOX2	REV__nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-MATCH	OvCa9_classI_Rep2	2		1	588.31	587.302724	-2.057	-0.0012102	0.22284	0.0001311	-1.8342	-0.0010791	588.3103268798292	62.55	0.39799	59.801	59.445	59.842	-2.7487	-0.051469	0.00018519	NaN	4.6817	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45073	+		13796	19658	11204	11221							-0.007435291222464002
GGGGGGRG	8	Unmodified	_GGGGGGRG_					0	0	0		ENSG00000103489|ENST00000261381|XYLT1;ENST00000599159.1_1_19:40329665-40336940:-|nuORF;ENST00000491165.5_2_3:113415279-113415423:-|nuORF;ENSG00000171262|ENST00000397609|FAM98B;ENST00000323061.5_1_4:89618468-89618519:-|nuORF;ENST00000568506.1_1_16:30194950-30195564:-|nuORF;ENST00000263708.6_1_2:120517366-120517459:+|nuORF;ENST00000369842.8_1_X:153609605-153609698:+|nuORF;ENST00000406875.7_1_7:139257479-139257596:-|nuORF;ENST00000361671.9_1_9:88556066-88557097:+|nuORF;ENST00000313806.8_1_21:35987155-35987341:-|nuORF;ENST00000238855.11_1_2:64751466-64751667:+|nuORF;ENST00000337963.8_2_13:20436577-20437761:-|nuORF;nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36;RAB11FIP5|p.Q575Pfs*30|1|0.03|ENSG00000135631|chr2:73076027-73076028|-/G|frameshift_variant;ENSG00000135631|ENST00000486777|RAB11FIP5;CON__P04264;ENSG00000167768|ENST00000252244|KRT1;ENSG00000105202|ENST00000221801|FBL;ENSG00000188573|ENST00000338333|FBLL1;ENSG00000168509|ENST00000336751|HJV;HFE2|p.C321Vfs*21|1|0.15|ENSG00000168509|chr1:146018397-146018398|-/C|frameshift_variant	ENSG00000103489|ENST00000261381|XYLT1;nc|ENSG00000174953|Q9H2U1-3|DHX36;RAB11FIP5|p.Q575Pfs*30|1|0.03|ENSG00000135631|chr2:73076027-73076028|-/G|frameshift_variant;REV__ENSG00000163013|ENST00000520530|FBXO41;CON__P04264;REV__REXO1|p.K812Qfs*41|1|0.1|ENSG00000079313|chr19:1820357-1820358|-/C|frameshift_variant;REV__ENSG00000167680|ENST00000586582|SEMA6B;REV__ENSG00000274211|ENST00000612932|SOCS7;REV__sp|P17147|DNBI_HCMVAMajorDNA-bindingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=DBPPE=1SV=1;ENSG00000105202|ENST00000221801|FBL;REV__CON__Q3TTY5;REV__ENST00000599159.1_1_19:40329665-40336940:-|nuORF;ENSG00000168509|ENST00000336751|HJV	nc|ENSG00000174953|Q9H2U1-3|DHX36	MULTI-SECPEP	OvCa9_classI_Rep4_	4	574.8384399414062	1	574.269198	573.261922	-0.75933	-0.00043606	3.8277	0.0021981	3.0683	0.0017621	574.2720926871427	91.328	0.30704	88.786	88.605	88.912	-2.5425					7	5	2	0	0	0	0.028476	1	7884	7884		8.2313	0	1	8543		+	13797	7503;4394;23621;2429;2320;20800;621;17040;21300;29404;16212;17703;6916	11205	11222	15252	15252					-0.041778704418561574
GGGGKGGG	8	Unmodified	_GGGGKGGG_					0	0	0		ENSG00000248713|ENST00000511828|C4orf54	REV__ENSG00000248713|ENST00000511828|C4orf54	REV__ENSG00000248713|ENST00000511828|C4orf54	MULTI-SECPEP	OvCa9_classI_Rep3	3	545.316650390625	1	546.26305	545.255774	-3.1199	-0.0017043	1.4571	0.00079595	-1.6628	-0.00090833	546.2628301115905	143.26	0.29678	142.27	142.14	142.44	-0.9903					7	5	2	0	0	0	0.028476	1	11909	11909		4.6817	0.36548	1	9452.1			13798	23485	11206	11223	15253	15253					-0.03504388673377434
GGGGPGAA	8	Unmodified	_GGGGPGAA_					0	0	0		ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3;ENST00000542165.1_1_11:94706537-94706621:-|nuORF;nc|ENSG00000012779|P09917-4|ALOX5;TRIM71|p.A317Dfs*25|1|0.07|ENSG00000206557|chr3:32873915-32873915|C/-|frameshift_variant;ENSG00000206557|ENST00000383763|TRIM71	ENSG00000144357|ENST00000272793|UBR3;TRIM71|p.A317Dfs*25|1|0.07|ENSG00000206557|chr3:32873915-32873915|C/-|frameshift_variant	ENSG00000144357|ENST00000272793|UBR3	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8225708007812	1	543.252151	542.244875	0.028114	1.5273E-05	-4.3018	-0.002337	-4.2737	-0.0023217	543.2502566330047	31.981	0.14897	31.981	31.906	32.055	0					4	2	2	0	0	0	0.028476	1	1356	1356		5.0869	0	1	10263			13799	5144;9102	11207	11224	15254	15254					-0.04455791047666935
GGGGPGAL	8	Unmodified	_GGGGPGAL_					0	0	0			REV__ENSG00000145740|ENST00000396591|SLC30A5	REV__ENSG00000145740|ENST00000396591|SLC30A5	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.232666015625	1	585.299101	584.291825	0.078801	4.6122E-05	3.7646	0.0022034	3.8434	0.0022495	585.3017404971229	101.68	0.686	101.68	101.57	102.25	0					18	15	2	0	0	0	0.028476	1	11378	11378		10.185	5.0979	1	218820	+		13800	19981	11208	11225	15255	15255					-0.016949314965359008
GGGKGPGG	8	Unmodified	_GGGKGPGG_					0	0	0		nc|ENSG00000198862|O94822-3|LTN1	nc|ENSG00000198862|O94822-3|LTN1	nc|ENSG00000198862|O94822-3|LTN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.3255615234375	1	586.29435	585.287074	-1.6219	-0.00095091	0.84874	0.00049761	-0.77316	-0.0004533	586.2928858065297	64.047	0.39886	64.047	63.854	64.253	0					15	9	3	0	0	0	0.028476	1	5802	5802		1.4648	0	1	212090			13801	15262	11209	11226	15256	15256					-0.022158156392833916
GGGSDSGG	8	Unmodified	_GGGSDSGG_					0	0	0		ENSG00000137504|ENST00000527447|CREBZF	ENSG00000137504|ENST00000527447|CREBZF	ENSG00000137504|ENST00000527447|CREBZF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	593.8199462890625	1	593.21616	592.208883	0.81001	0.00048051	1.3083	0.00077613	2.1184	0.0012566	593.2168253546582	111.45	0.94767	109.93	109.53	110.47	-1.5111					29	17	2	0	0	0	0.028476	1	10334	10334		4.6817	0	1	67857			13802	4593	11210	11227	15257	15257					-0.10353293015168674
GGGSGGNC	8	Unmodified	_GGGSGGNC_					0	0	0			REV__ENSG00000274211|ENST00000612932|SOCS7	REV__ENSG00000274211|ENST00000612932|SOCS7	MULTI-SECPEP	OvCa99_classI_Rep5	1	607.8709106445312	1	608.2093	607.202024	0.15522	9.4407E-05	-3.7881	-0.002304	-3.6329	-0.0022095	608.2093088115206	21.624	2.6729	21.624	20.974	23.647	0					99	71	2	0	0	0	0.028476	1	116	116		1.0954	0	1	14041	+		13803	23621	11211	11228	15258	15258					-0.11728929167406932
GGGVRLRP	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))GGGVRLRP_					1	0	0			REV__ENST00000374810.7_1_20:33296602-33296635:+|nuORF	REV__ENST00000374810.7_1_20:33296602-33296635:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	427.2550048828125	2	427.253769	852.492984	-0.21103	-9.0164E-05	0.017412	7.4392E-06	-0.19362	-8.2725E-05	427.2536716051794	49.176	0.6974	49.176	48.895	49.593	0					28	15	2	0	0	0	0.7043	1	3655	3655		42.474	10.52	1	756970	+		13804	25069	11212	11229	15259	15259					0.0608375753998871
GGHGRLGF	8	Unmodified	_GGHGRLGF_					0	0	0			REV__ENST00000370272.8_1_1:93811507-93811618:+|nuORF	REV__ENST00000370272.8_1_1:93811507-93811618:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	400.71417236328125	2	400.711737	799.40892	0.63937	0.0002562	2.8612	0.0011465	3.5005	0.0014027	400.71275912503387	64.274	0.5807	64.274	64.051	64.631	0					23	13	2	0	0	0	0.75991	1	5845	5845		21.702	0	1	1034000	+		13805	24957	11213	11230	15260	15260					0.0011922644307560404
GGHPLSRK	8	Unmodified	_GGHPLSRK_					0	0	0		ENST00000396987.7_1_8:41478885-41479125:+|nuORF	ENST00000396987.7_1_8:41478885-41479125:+|nuORF	ENST00000396987.7_1_8:41478885-41479125:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	426.24737548828125	2	426.245944	850.477334	1.5061	0.00064196	-1.4207	-0.00060555	0.085419	3.641E-05	426.24523618232024	139.52	1.3271	138.02	137.63	138.95	-1.4952					53	25	3	0	0	0	0.73938	1	13597	13597		31.955	6.3808	1	256270			13806	11333	11214	11231	15261	15261					0.0461147102294035
GGIALSIIAL	10	Unmodified	_GGIALSIIAL_					0	0	0			REV__ENSG00000079134|ENST00000261600|THOC1	REV__ENSG00000079134|ENST00000261600|THOC1	MULTI-MSMS	OvCa99_classI_Rep5	1	464.2979431152344	2	464.29731	926.580068	2.493	0.0011575	1.166	0.00054137	3.659	0.0016989	464.2980388785935	102.26	0.89548	102.26	102	102.89	0					37	20	3	0	0	0	0.20267	1	11408	11408		94.006	0.81096	1	931140	+		13807	17034	11215	11232	15262	15262					0.1138411897103424
GGIIVFTLFI	10	Unmodified	_GGIIVFTLFI_					0	0	0			REV__ENST00000345358.11_1_19:49464934-49465024:+|nuORF	REV__ENST00000345358.11_1_19:49464934-49465024:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3307495117188	2	540.328611	1078.64267	-1.2676	-0.00068491	4.0333	0.0021793	2.7657	0.0014944	540.3307152267141	139.22	4.0818	138.16	137	141.08	-1.0595					200	82	3	0	0	0	0.58282	1	11330	11330		44.117	3.5442	1	55828	+		13808	24692	11216	11233	15263	15263					0.1064926503922834
GGIPFMVKVL	10	Unmodified	_GGIPFMVKVL_					0	0	0			REV__tr|A0A553SKH7|A0A553SKH7_NIACItRNA-specific2-thiouridylaseMnmAOS=NialliacirculansOX=1397GN=mnmAPE=3SV=1	REV__tr|A0A553SKH7|A0A553SKH7_NIACItRNA-specific2-thiouridylaseMnmAOS=NialliacirculansOX=1397GN=mnmAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	530.8179321289062	2	530.814813	1059.61507	1.694	0.00089921	3.7912	0.0020124	5.4853	0.0029117	530.8167033652293	92.435	0.33323	92.435	92.301	92.635	0					13	7	2	0	0	0	0.49049	1	9996	9996		55.504	2.1528	1	686490	+		13809	30128	11217	11234	15264	15264					0.0876503850734025
GGIQVRSRPV	10	Unmodified	_GGIQVRSRPV_					0	0	0		ENSG00000005108|ENST00000423059|THSD7A	ENSG00000005108|ENST00000423059|THSD7A	ENSG00000005108|ENST00000423059|THSD7A	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.8182983398438	2	534.817264	1067.61998	-0.72706	-0.00038884	3.3682	0.0018014	2.6411	0.0014125	534.8189206796526	142.34	1.0583	140.87	140.66	141.71	-1.4627					36	20	4	0	0	0	0.49558	2	13939	13923;13939		54.776	8.8041	1	43767			13810	844	11218	11235	15265;15266	15266					0.08887058694313055
GGIQVRSRPV	10	Unmodified	_GGIQVRSRPV_					0	0	0		ENSG00000005108|ENST00000423059|THSD7A	ENSG00000005108|ENST00000423059|THSD7A	ENSG00000005108|ENST00000423059|THSD7A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	534.817264	1067.61998	-2.2907	-0.0012251	4.5912	0.0024555	2.3006	0.0012304	534.8196722417315	141.37	0.84459	141.15	140.87	141.72	-0.22696	0.17171	0.00048589	NaN	54.776	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49734			13811	844	11218	11235							0.08887058694313055
GGITTITVNQ	10	Unmodified	_GGITTITVNQ_					0	0	0		ENST00000562022.1_1_15:43093683-43094592:-|nuORF	ENST00000562022.1_1_15:43093683-43094592:-|nuORF	ENST00000562022.1_1_15:43093683-43094592:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.27642822265625	2	502.274564	1002.53457	-0.88603	-0.00044503	-0.11995	-6.0249E-05	-1.006	-0.00050528	502.2743814538115	79.525	1.6887	76.774	76.322	78.011	-2.7514					74	34	3	0	0	0	0.45822	1	6485	6485		60.118	5.3419	1	1032500			13812	13764	11219	11236	15267	15267					0.033408487179940494
GGITVIKVPK	10	Unmodified	_GGITVIKVPK_					0	0	0			REV__tr|A0A7D6VS68|A0A7D6VS68_9CLOT6-phospho-beta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03725PE=3SV=1	REV__tr|A0A7D6VS68|A0A7D6VS68_9CLOT6-phospho-beta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03725PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	506.3316955566406	2	506.331685	1010.64882	-0.48567	-0.00024591	0.50848	0.00025746	0.02281	1.155E-05	506.33188661899624	122.71	0.88946	122.49	122.22	123.11	-0.21803					45	17	3	0	0	0	0.42962	1	11909	11909		64.207	3.9133	1	120630	+		13813	31474	11220	11237	15268	15268					0.14391783270741598
GGIVGGIVNFI	11	Unmodified	_GGIVGGIVNFI_					0	0	0		ENSG00000256812|ENST00000457326|CAPNS2	ENSG00000256812|ENST00000457326|CAPNS2	ENSG00000256812|ENST00000457326|CAPNS2	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3030395507812	2	523.305667	1044.59678	-2.1227	-0.0011108	-1.8084	-0.00094634	-3.9311	-0.0020572	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.70518	1	11562	11562		27.882	3.6795	1	183010			13814	9466	11221	11238	15269	15269					0.0762661985700106
GGIVMIVDMN	10	Unmodified	_GGIVMIVDMN_					0	0	0			REV__ENSG00000178502|ENST00000319121|KLHL11	REV__ENSG00000178502|ENST00000319121|KLHL11	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.7990112304688	2	524.76192	1047.50929	2.621	0.0013754	-1.37	-0.00071893	1.251	0.00065646	524.7611899807432	88.626	0.41669	88.626	88.426	88.843	0					17	9	2	0	0	0	0.026994	1	9457	9457		25.574	4.6271	1	485370	+		13815	22061	11222	11239	15270	15270					-0.012566654004331212
GGKGVQFI	8	Unmodified	_GGKGVQFI_					0	0	0			REV__tr|A0A553SKG9|A0A553SKG9_NIACIRibosomeassemblyRNA-bindingproteinYhbYOS=NialliacirculansOX=1397GN=yhbYPE=4SV=1	REV__tr|A0A553SKG9|A0A553SKG9_NIACIRibosomeassemblyRNA-bindingproteinYhbYOS=NialliacirculansOX=1397GN=yhbYPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	403.2322998046875	2	403.231971	804.449388	2.1395	0.00086272	-2.2493	-0.00090701	-0.10982	-4.4282E-05	403.2309156616357	86.891	2.0023	85.46	85.069	87.071	-1.4311					88	39	4	0	0	0	0.68312	1	7578	7578		46.766	0	1	373290	+		13816	30124	11223	11240	15271	15271					0.03934148042844754
GGKLPKGILL	10	Unmodified	_GGKLPKGILL_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.33306884765625	2	498.334227	994.653902	1.2643	0.00063007	-1.8659	-0.00092985	-0.60157	-0.00029978	498.3332884380841	124.71	3.4398	123.66	123.27	126.71	-1.0519					179	65	5	0	0	0	0.55359	1	9817	9817		47.657	17.154	1	3929400			13817	4511	11224	11241	15272	15272					0.15636087133384535
GGKSKIVQPF	10	Unmodified	_GGKSKIVQPF_					0	0	0			REV__ENST00000566012.1_1_16:30077179-30079547:+|nuORF	REV__ENST00000566012.1_1_16:30077179-30079547:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	530.8097534179688	2	530.811116	1059.60768	0.34487	0.00018306	3.3677	0.0017876	3.7125	0.0019707	530.8127589207236	128.23	1.7294	128.01	127.69	129.42	-0.22696					65	34	3	0	0	0	0.53807	1	12559	12559		49.536	7.1399	1	105520	+		13818	20179	11225	11242	15273	15273					0.08026022231297247
GGKTAGGG	8	Unmodified	_GGKTAGGG_					0	0	0			REV__ENST00000597578.1_1_16:86524040-86542451:-|nuORF	REV__ENST00000597578.1_1_16:86524040-86542451:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	603.3550415039062	1	604.304915	603.297639	-0.075347	-4.5532E-05	2.4278	0.0014671	2.3524	0.0014216	604.3090899713715	56.136	0.52737	56.136	55.932	56.459	0					24	12	3	0	0	0	0.028476	1	4646	4646		16.473	10.552	1	471640	+		13819	28001	11226	11243	15274	15274					-0.019878329848552312
GGKTANHKKR	10	Unmodified	_GGKTANHKKR_					0	0	0		tr|A0A7D6VZJ6|A0A7D6VZJ6_9CLOTUPF0178proteinHZF06_20025OS=ClostridiumintestinaleOX=36845GN=HZF06_20025PE=3SV=1	tr|A0A7D6VZJ6|A0A7D6VZJ6_9CLOTUPF0178proteinHZF06_20025OS=ClostridiumintestinaleOX=36845GN=HZF06_20025PE=3SV=1	tr|A0A7D6VZJ6|A0A7D6VZJ6_9CLOTUPF0178proteinHZF06_20025OS=ClostridiumintestinaleOX=36845GN=HZF06_20025PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.3353881835938	2	548.820338	1095.62612	-0.19768	-0.00010849	-0.10624	-5.8309E-05	-0.30392	-0.0001668	548.8200451469548	30.756	0.39741	30.756	30.582	30.979	0					13	7	3	0	0	0	0.026653	1	1234	1234		41.427	15.853	1	102130			13820	35360	11227	11244	15275	15275					0.08213576925822963
GGKYAVFKIT	10	Unmodified	_GGKYAVFKIT_					0	0	0		tr|A0A553SG91|A0A553SG91_NIACIDNAgyraseinhibitorOS=NialliacirculansOX=1397GN=CEQ21_10415PE=4SV=1	tr|A0A553SG91|A0A553SG91_NIACIDNAgyraseinhibitorOS=NialliacirculansOX=1397GN=CEQ21_10415PE=4SV=1	tr|A0A553SG91|A0A553SG91_NIACIDNAgyraseinhibitorOS=NialliacirculansOX=1397GN=CEQ21_10415PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.7952270507812	2	542.313492	1082.61243	0.96873	0.00052536	-4.4144	-0.002394	-3.4457	-0.0018686	542.3110980051775	154.13	0.68956	154.13	153.83	154.52	0					22	13	2	0	0	0	0.026681	1	18043	18043		44.377	6.5657	1	73793			13821	33129	11228	11245	15276	15276					0.07442906374035374
GGLAMCMREF	10	Unmodified	_GGLAMCMREF_					0	0	0			REV__ENST00000568205.1_1_16:89616945-89619626:+|nuORF	REV__ENST00000568205.1_1_16:89616945-89619626:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	557.74560546875	2	557.745747	1113.47694	3.503	0.0019538	-2.125	-0.0011852	1.378	0.00076856	557.7446408025094	97.374	1.4593	97.374	97.093	98.552	0					119	33	5	0	0	0	0.48198	1	10808	10808		56.721	5.3856	1	85947000	+		13822	22967	11229	11246	15277	15277					-0.07525776075090107
GGLESIKLKL	10	Unmodified	_GGLESIKLKL_					0	0	0		ENSG00000145375|ENST00000274008|SPATA5;nc|ENSG00000145375|Q8NB90-3|AFG2A;nc|ENSG00000145375|Q8NB90-2|AFG2A;ENST00000422835.2_1_4:123844270-124023368:+|nuORF	ENSG00000145375|ENST00000274008|SPATA5	ENSG00000145375|ENST00000274008|SPATA5	MULTI-MSMS	OvCa9_classI_Rep2	2	529.3328247070312	2	529.334424	1056.6543	-1.2215	-0.00064657	2.8876	0.0015285	1.6661	0.00088191	529.3357853309486	57.37	1.1974	54.578	54.328	55.525	-2.792					51	23	4	0	0	0	0.48398	1	4085	4085		56.434	1.6575	1	155790			13823	5219	11230	11247	15278	15278					0.12823462062556246
GGLFFPDKTL	10	Unmodified	_GGLFFPDKTL_					0	0	0			REV__ENST00000233379.8_1_2:96079888-96080107:+|nuORF	REV__ENST00000233379.8_1_2:96079888-96080107:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.7970581054688	2	547.797675	1093.5808	-0.29871	-0.00016363	-3.4268	-0.0018772	-3.7255	-0.0020408	547.7955534971053	90.585	2.0361	88.01	87.6	89.636	-2.575					92	37	4	0	0	0	0.47142	1	7802	7802		58.23	3.5076	1	521420	+		13824	23797	11231	11248	15279	15279					0.03774913620077314
GGLFMFDVHS	10	Unmodified	_GGLFMFDVHS_					0	0	0		tr|A0A553SKM0|A0A553SKM0_NIACIClassISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_18870PE=4SV=1	tr|A0A553SKM0|A0A553SKM0_NIACIClassISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_18870PE=4SV=1	tr|A0A553SKM0|A0A553SKM0_NIACIClassISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_18870PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.8600463867188	2	555.257859	1108.50117	2.2373	0.0012423	-0.49083	-0.00027254	1.7464	0.00096972	555.257320831733	85.437	1.5084	85.437	84.963	86.471	0					52	36	2	0	0	0	0.027117	1	8981	8981		30.504	14.03	1	341110			13825	33631	11232	11249	15280	15280					-0.04874476325562682
GGLFVFSQF	9	Unmodified	_GGLFVFSQF_					0	0	0			REV__nc|ENSG00000173085|Q96H96-3|COQ2	REV__nc|ENSG00000173085|Q96H96-3|COQ2	MULTI-MSMS	OvCa99_classI_Rep5	1	501.2591552734375	2	501.258185	1000.50182	1.1939	0.00059847	0.98173	0.0004921	2.1757	0.0010906	501.25854766123564	143.61	1.283	143.61	143.27	144.55	0					52	25	3	0	0	0	0.36502	1	16796	16796		55.504	7.5886	1	438890	+		13826	21746	11233	11250	15281	15281					0.0015868638580514016
GGLLIIEDGEI	11	Unmodified	_GGLLIIEDGEI_					0	0	0		ENST00000439374.6_1_1:151024696-151024969:-|nuORF	ENST00000439374.6_1_1:151024696-151024969:-|nuORF	ENST00000439374.6_1_1:151024696-151024969:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	564.8132934570312	2	564.810979	1127.6074	2.6844	0.0015162	0.58037	0.0003278	3.2648	0.001844	564.8106627810707	106.43	0.96272	106.43	106.01	106.97	0					50	21	4	0	0	0	0.3578	1	11990	11990		64.207	0.67341	1	1332600			13827	11915	11234	11251	15282	15282					0.048705577207556416
GGLPHILQLP	10	Unmodified	_GGLPHILQLP_					0	0	0		nc|ENSG00000132879|Q9H4M3-2|FBXO44	nc|ENSG00000132879|Q9H4M3-2|FBXO44	nc|ENSG00000132879|Q9H4M3-2|FBXO44	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.7948608398438	2	522.813659	1043.61277	-2.2097	-0.0011553	0.68993	0.0003607	-1.5198	-0.00079455	522.8139574873854	87.61	1.4618	84.983	84.599	86.061	-2.6269					59	28	3	0	0	0	0.026669	1	7528	7528		47.916	16.386	1	171170			13828	15019	11235	11252	15283	15283					0.09270326093906078
GGLPHILQLP	10	Unmodified	_GGLPHILQLP_					0	0	0		nc|ENSG00000132879|Q9H4M3-2|FBXO44	nc|ENSG00000132879|Q9H4M3-2|FBXO44	nc|ENSG00000132879|Q9H4M3-2|FBXO44	MULTI-MATCH	OvCa9_classI_Rep2	2		2	522.813659	1043.61277	-0.14958	-7.8203E-05	-0.82654	-0.00043212	-0.97612	-0.00051033	522.8130876656857	86.162	1.3371	84.672	84.344	85.682	-1.4907	-0.20302	-0.00096751	NaN	47.916	52	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148350			13829	15019	11235	11252							0.09270326093906078
GGLPHILQLP	10	Unmodified	_GGLPHILQLP_					0	0	0		nc|ENSG00000132879|Q9H4M3-2|FBXO44	nc|ENSG00000132879|Q9H4M3-2|FBXO44	nc|ENSG00000132879|Q9H4M3-2|FBXO44	MULTI-MATCH	OvCa9_classI_Rep3	3		2	522.813659	1043.61277	-1.0429	-0.00054524	0.62905	0.00032888	-0.41385	-0.00021637	522.8138172835837	87.146	1.6363	84.97	84.633	86.269	-2.1768	0.095023	0.00055449	NaN	47.916	72	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249420			13830	15019	11235	11252							0.09270326093906078
GGLRPVRAS	9	Unmodified	_GGLRPVRAS_					0	0	0		chr6:109250991-109254448|247|18.56|0.13|7.16|+|1|TE_info:L1PA2,L1PA2_dup2028,L1,LINE,donor,-,109245219,109250991|None,CCDC162P|102	chr6:109250991-109254448|247|18.56|0.13|7.16|+|1|TE_info:L1PA2,L1PA2_dup2028,L1,LINE,donor,-,109245219,109250991|None,CCDC162P|102	chr6:109250991-109254448|247|18.56|0.13|7.16|+|1|TE_info:L1PA2,L1PA2_dup2028,L1,LINE,donor,-,109245219,109250991|None,CCDC162P|102	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.7726135253906	2	456.772326	911.530098	0.021393	9.7715E-06	-0.016883	-7.7118E-06	0.0045094	2.0598E-06	456.772221860438	143.17	2.3082	141.72	140.94	143.25	-1.4427					127	44	4	0	0	0	0.62352	1	14008	14008		29.15	1.2673	1	669650			13831	505	11236	11253	15284	15284					0.07079429085740685
GGLTNALPILP	11	Unmodified	_GGLTNALPILP_					0	0	0		nc|ENSG00000006757|P41247-2|PNPLA4;ENSG00000006757|ENST00000381042|PNPLA4	nc|ENSG00000006757|P41247-2|PNPLA4	nc|ENSG00000006757|P41247-2|PNPLA4	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.3174438476562	2	533.318774	1064.623	-0.80981	-0.00043189	0.31819	0.00016969	-0.49162	-0.00026219	533.3187898534811	123.14	1.0894	121.77	121.46	122.55	-1.3666					47	21	3	0	0	0	0.63561	1	11642	11642		41.427	0.85399	1	110230			13832	892	11237	11254	15285	15285					0.09326889028466212
GGLTWQVAKL	10	Unmodified	_GGLTWQVAKL_					0	0	0		ENSG00000139531|ENST00000266971|SUOX	ENSG00000139531|ENST00000266971|SUOX	ENSG00000139531|ENST00000266971|SUOX	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.8106689453125	2	536.811116	1071.60768	-0.85455	-0.00045873	-3.4845	-0.0018705	-4.3391	-0.0023293	536.8091929671385	66.71	1.4792	63.22	62.805	64.284	-3.4902					90	29	6	0	0	0	0.65849	1	4918	4918		35.152	1.6364	1	2051100			13833	4780	11238	11255	15286	15286					0.07474022231258459
GGLVKVNE	8	Unmodified	_GGLVKVNE_					0	0	0			REV__ENSG00000178966|ENST00000445877|RMI1	REV__ENSG00000178966|ENST00000445877|RMI1	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.7037658691406	2	408.23471	814.454868	1.1635	0.00047498	-2.3099	-0.00094298	-1.1464	-0.000468	408.2348377591246	62.205	0.34097	62.205	61.953	62.294	0					9	7	2	0	0	0	0.028476	1	5534	5534		21.96	1.013	1	64706	+		13834	22091	11239	11256	15287	15287					0.04021826834662079
GGMNMWAQAQ	10	Unmodified	_GGMNMWAQAQ_					0	0	0			REV__nc|ENSG00000133687|Q8IUR5-1|TMTC1	REV__nc|ENSG00000133687|Q8IUR5-1|TMTC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.3206787109375	2	547.231319	1092.44808	-0.3473	-0.00019006	3.1171	0.0017058	2.7698	0.0015157	547.2328474031173	102.5	0.57982	100.3	99.937	100.52	-2.1994					18	10	3	0	0	0	0.026956	1	9196	9196		34.173	8.5985	1	19490	+		13835	19152	11240	11257	15288	15288					-0.09444177379873508
GGMNMWAQAQ	10	Unmodified	_GGMNMWAQAQ_					0	0	0			REV__nc|ENSG00000133687|Q8IUR5-1|TMTC1	REV__nc|ENSG00000133687|Q8IUR5-1|TMTC1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	547.231319	1092.44808	-1.4121	-0.00077275	4.543	0.0024861	3.1309	0.0017133	547.2336463505111	101.65	0.52658	100.13	99.896	100.42	-1.5233	-0.083134	0.00045513	NaN	34.173	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25303	+		13836	19152	11240	11257							-0.09444177379873508
GGMTTIPLLV	10	Unmodified	_GGMTTIPLLV_					0	0	0		DGKG|p.F695Sfs*16|1|0.12|ENSG00000058866|chr3:186188213-186188213|A/-|frameshift_variant;ENST00000480809.5_1_3:185925300-186038248:-|nuORF;ENST00000482566.1_1_3:185997579-185998530:-|nuORF;DGKB|p.K240Tfs*10|1|0.05|ENSG00000136267|chr7:14685318-14685357|AAAGTGCTTCAGTCGCCACACGTGCTGTCCATCATCCTTC/-|frameshift_variant;ENST00000477401.5_1_7:14660999-14880939:-|nuORF;ENST00000403963.5_1_7:14249142-14880939:-|nuORF;nc|ENSG00000058866|P49619-3|DGKG;nc|ENSG00000058866|P49619-2|DGKG;ENSG00000058866|ENST00000265022|DGKG;nc|ENSG00000136267|Q9Y6T7-2|DGKB;ENSG00000136267|ENST00000402815|DGKB;nc|ENSG00000136267|Q9Y6T7|DGKB	DGKG|p.F695Sfs*16|1|0.12|ENSG00000058866|chr3:186188213-186188213|A/-|frameshift_variant;nc|ENSG00000058866|P49619-3|DGKG	DGKG|p.F695Sfs*16|1|0.12|ENSG00000058866|chr3:186188213-186188213|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	501.2899169921875	2	501.288628	1000.5627	-0.80197	-0.00040202	4.3304	0.0021708	3.5285	0.0017688	501.2906816095173	135.63	4.8104	135.4	133.71	138.52	-0.22697					221	98	3	0	0	0	0.76627	1	13659	13659		23.042	1.3402	1	70595			13837	732;1250	11241	11258	15289	15289					0.06244455373746405
GGNEGWVPQ	9	Unmodified	_GGNEGWVPQ_					0	0	0		ENST00000576846.1_1_17:7530278-7530680:-|nuORF	ENST00000576846.1_1_17:7530278-7530680:-|nuORF	ENST00000576846.1_1_17:7530278-7530680:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	472.21905517578125	2	472.217049	942.419545	-0.15953	-7.5333E-05	3.7488	0.0017702	3.5892	0.0016949	472.2186751855742	47.516	1.5101	47.516	47.208	48.718	0					71	34	3	0	0	0	0.31747	1	3420	3420		60.972	3.1607	1	1930300			13838	13953	11242	11259	15290	15290					-0.053968356931363815
GGNGGGKP	8	Unmodified	_GGNGGGKP_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-SECPEP	OvCa99_classI_Rep5	1	643.2911987304688	1	643.315814	642.308538	2.827	0.0018187	2.348	0.0015105	5.1751	0.0033292	643.3139765969095	75.251	0.12395	75.251	75.168	75.292	0					4	2	2	0	0	0	0.028476	1	7478	7478		12.959	4.1369	1	57044			13839	2211	11243	11260	15291	15291					-0.02692430610568408
GGPCGWSR	8	Unmodified	_GGPCGWSR_					0	0	0			REV__ENST00000486845.1_1_6:33382534-33383872:+|nuORF	REV__ENST00000486845.1_1_6:33382534-33383872:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	409.5752868652344	2	410.181955	818.349357	0.85705	0.00035155	0.050497	2.0713E-05	0.90755	0.00037226	410.1818809191997	45.632	0.50385	42.922	42.697	43.2	-2.7097					12	9	2	0	0	0	0.028476	1	2653	2653		12.207	0	1	10366	+		13840	26591	11244	11261	15292	15292					-0.06708412562602462
GGPGVEHR	8	Unmodified	_GGPGVEHR_					0	0	0		tr|A0A7D6ZHB1|A0A7D6ZHB1_9CLOTDihydropyrimidinaseOS=ClostridiumintestinaleOX=36845GN=hydAPE=3SV=1	tr|A0A7D6ZHB1|A0A7D6ZHB1_9CLOTDihydropyrimidinaseOS=ClostridiumintestinaleOX=36845GN=hydAPE=3SV=1	tr|A0A7D6ZHB1|A0A7D6ZHB1_9CLOTDihydropyrimidinaseOS=ClostridiumintestinaleOX=36845GN=hydAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	405.55267333984375	2	404.706651	807.39875	0.75514	0.00030561	-0.8581	-0.00034728	-0.10295	-4.1665E-05	404.70616552800095	47.731	0.89289	45.021	44.786	45.679	-2.7097					28	17	2	0	0	0	0.028476	1	2905	2905		31.955	18.996	1	52936			13841	35569	11245	11262	15293	15293					-0.012653812821440624
GGPNMLPVTL	10	Unmodified	_GGPNMLPVTL_					0	0	0			REV__ENSG00000078699|ENST00000342704|CBFA2T2	REV__ENSG00000078699|ENST00000342704|CBFA2T2	MULTI-SECPEP	OvCa9_classI_Rep2	2	499.28759765625	2	499.770603	997.526652	1.163	0.00058125	-2.4475	-0.0012232	-1.2845	-0.00064195	499.76943100244983	90.785	0.76137	89.482	89.126	89.888	-1.302					22	14	2	0	0	0	0.026635	1	8020	8020		47.657	8.4045	1	20862	+		13842	17029	11246	11263	15294	15294					0.02778998196890825
GGPNMLPVTL	10	Unmodified	_GGPNMLPVTL_					0	0	0			REV__ENSG00000078699|ENST00000342704|CBFA2T2	REV__ENSG00000078699|ENST00000342704|CBFA2T2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	499.770603	997.526652	-0.98066	-0.00049011	0.62986	0.00031479	-0.3508	-0.00017532	499.77065674800616	91.952	0.61023	89.409	89.212	89.822	-2.5425	-0.11613	0.00088457	NaN	47.657	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22162	+		13843	17029	11246	11263							0.02778998196890825
GGPPGPTRPLT	11	Unmodified	_GGPPGPTRPLT_					0	0	0		nc|ENSG00000169696|Q9BZE9-4|ASPSCR1;nc|ENSG00000169696|Q9BZE9-3|ASPSCR1;ENSG00000169696|ENST00000306739|ASPSCR1;nc|ENSG00000169696|Q9BZE9-2|ASPSCR1	nc|ENSG00000169696|Q9BZE9-4|ASPSCR1	nc|ENSG00000169696|Q9BZE9-4|ASPSCR1	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.2908935546875	2	525.290548	1048.56654	-0.36005	-0.00018913	1.0143	0.00053279	0.65423	0.00034366	525.2904076921207	59.565	2.1279	56.173	55.655	57.782	-3.392					95	42	5	0	0	0	0.56391	1	3987	3987		47.96	0.30219	1	520860			13844	7033	11247	11264	15295	15295					0.044202611917853574
GGPPGPTRPLT	11	Unmodified	_GGPPGPTRPLT_					0	0	0		nc|ENSG00000169696|Q9BZE9-4|ASPSCR1;nc|ENSG00000169696|Q9BZE9-3|ASPSCR1;ENSG00000169696|ENST00000306739|ASPSCR1;nc|ENSG00000169696|Q9BZE9-2|ASPSCR1	nc|ENSG00000169696|Q9BZE9-4|ASPSCR1	nc|ENSG00000169696|Q9BZE9-4|ASPSCR1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	525.290548	1048.56654	-0.41304	-0.00021697	1.559	0.00081893	1.146	0.00060197	525.2906212349752	58.915	1.7959	56.135	55.537	57.333	-2.7801	-0.019312	0.00029707	NaN	47.96	61	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172240			13845	7033	11247	11264							0.044202611917853574
GGPPRVVLLP	10	Unmodified	_GGPPRVVLLP_					0	0	0			REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1	REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1	MULTI-MSMS	OvCa9_classI_Rep2	2	502.81414794921875	2	502.816202	1003.61785	-4.451	-0.0022381	0.22723	0.00011425	-4.2238	-0.0021238	502.8162192928447	153.83	1.4178	153.6	153.28	154.7	-0.22696					88	30	4	0	0	0	0.69986	1	15663	15663		30.504	1.3541	1	684970	+		13846	21013	11248	11265	15296	15296					0.11618629956512905
GGPPRVVLLP	10	Unmodified	_GGPPRVVLLP_					0	0	0			REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1	REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.81451416015625	2	502.816202	1003.61785	-4.7582	-0.0023925	0.34644	0.0001742	-4.4117	-0.0022183	502.8162748013114	154.42	1.5526	152.97	152.64	154.2	-1.4516					113	39	4	0	0	0	0.68695	1	15310	15310		31.955	2.8053	1	1254800	+		13847	21013	11248	11265	15297	15297					0.11618629956512905
GGPRAPPR	8	Unmodified	_GGPRAPPR_					0	0	0		ENST00000164227.9_1_19:45252055-45254595:+|nuORF	ENST00000164227.9_1_19:45252055-45254595:+|nuORF	ENST00000164227.9_1_19:45252055-45254595:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	404.2327575683594	2	404.232836	806.45112	4.3532	0.0017597	-4.1053	-0.0016595	0.24788	0.0001002	404.23103020545994	135.7	1.0357	134.16	133.81	134.84	-1.5437					47	20	3	0	0	0	0.75241	1	13177	13177		25.45	6.0902	1	317610			13848	9638	11249	11266	15298	15298					0.04015201851461825
GGQITSEPIQF	11	Unmodified	_GGQITSEPIQF_					0	0	0			REV__nc|ENSG00000233295|A6NIJ5|FAM90A20	REV__nc|ENSG00000233295|A6NIJ5|FAM90A20	MULTI-MSMS	OvCa99_classI_Rep5	1	588.8015747070312	2	588.798403	1175.58225	1.179	0.00069422	4.3628	0.0025688	5.5418	0.003263	588.8008652532537	144.86	1.5276	144.86	144.55	146.08	0					77	31	5	0	0	0	0.52474	1	16921	16921		51.528	5.5555	1	1137400	+		13849	29150	11250	11267	15299	15299					0.0014850291818220285
GGQPPPRQPPT	11	Unmodified	_GGQPPPRQPPT_					0	0	0			REV__ENSG00000157152|ENST00000621198|SYN2	REV__ENSG00000157152|ENST00000621198|SYN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.2875366210938	2	566.298904	1130.58326	-0.53334	-0.00030203	-1.8187	-0.0010299	-2.352	-0.001332	566.7999271324408	65.566	0.15775	65.566	65.467	65.625	0					5	3	2	0	0	0	0.025528	1	6025	6025		35.152	18.435	1	180540	+		13850	20513	11251	11268	15300	15300					0.023187620777662232
GGQQVDLASVL	11	Unmodified	_GGQQVDLASVL_					0	0	0		ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	ENSG00000130706|ENST00000253003|ADRM1	MULTI-MSMS	OvCa99_classI_Rep5	1	543.7930297851562	2	543.793121	1085.57169	2.1564	0.0011726	2.994	0.0016281	5.1504	0.0028007	543.7948283137953	107.4	2.2602	107.4	106.89	109.15	0					187	52	5	0	0	0	0.21275	1	12236	12236		78.264	0.9462	1	132780000			13851	4001	11252	11269	15301	15301					0.032325202637593975
GGQSGRGFGGP	11	Unmodified	_GGQSGRGFGGP_					0	0	0			REV__ENST00000442352.1_1_13:19775779-19782668:-|nuORF	REV__ENST00000442352.1_1_13:19775779-19782668:-|nuORF	MSMS	OvCa9_classI_Rep2	2	488.7331237792969	2	488.733397	975.452242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.766	1	37.056	36.556	37.556	-2.7097								0	0	0	0.19335	1	1961	1961		38.754	3.1353	1		+		13852	18543	11253	11270	15302	15302					-0.03646628570277244
GGREGEEALL	10	Unmodified	_GGREGEEALL_					0	0	0			REV__ENST00000345662.5_1_2:32288714-32288783:+|nuORF	REV__ENST00000345662.5_1_2:32288714-32288783:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7538452148438	2	515.76182	1029.50909	-0.91978	-0.00047439	-2.2845	-0.0011782	-3.2042	-0.0016526	515.7604705609308	127.55	1.5787	126.12	125.79	127.37	-1.4357					77	29	4	0	0	0	0.59317	1	12163	12163		42.864	2.0861	1	263920	+		13853	24694	11254	11271	15303	15303					-0.004486258044153146
GGRGSRGPGNP	11	Unmodified	_GGRGSRGPGNP_					0	0	0		nc|ENSG00000150527|Q96PC5-6|MIA2;nc|ENSG00000150527|Q96PC5-14|MIA2;nc|ENSG00000150527|Q96PC5-11|MIA2;nc|ENSG00000150527|Q96PC5-13|MIA2;ENSG00000212710|ENST00000391403|CTAGE1;nc|ENSG00000150527|Q96PC5-10|MIA2;nc|ENSG00000150527|Q96PC5-9|MIA2;nc|ENSG00000150527|Q96PC5-7|MIA2;nc|ENSG00000150527|Q96PC5-12|MIA2;ENSG00000150527|ENST00000640607|MIA2	nc|ENSG00000150527|Q96PC5-6|MIA2	nc|ENSG00000150527|Q96PC5-6|MIA2	MULTI-MSMS	OvCa99_classI_Rep5	1	506.2572937011719	2	506.257571	1010.50059	0.80727	0.00040869	-3.2648	-0.0016528	-2.4575	-0.0012441	506.25576650571276	141.9	0.85002	141.9	141.54	142.39	0					36	16	3	0	0	0	0.65063	1	16571	16571		40.058	1.252	1	185070			13854	15091	11255	11272	15304	15304					-0.004241349303811148
GGRKPKRKM	9	Unmodified	_GGRKPKRKM_					0	0	0		ENST00000479165.1_1_6:79650412-79665440:-|nuORF;ENSG00000146247|ENST00000275034|PHIP	ENST00000479165.1_1_6:79650412-79665440:-|nuORF	ENST00000479165.1_1_6:79650412-79665440:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	529.3211669921875	2	529.324202	1056.63385	-2.2715	-0.0012024	-2.1371	-0.0011312	-4.4086	-0.0023336	529.3228556155507	38.054	1.1856	35.345	35.075	36.261	-2.7097					42	23	3	0	0	0	0.46377	1	1764	1764		45.952	5.8938	1	136430			13855	5278	11256	11273	15305	15305					0.10780012921759408
GGRRRAVTF	9	Unmodified	_GGRRRAVTF_					0	0	0		LY75|p.S1527*|1|0.06|ENSG00000054219|chr2:159810645-159810645|G/-|frameshift_variant;ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75;ENST00000484559.1_1_2:160728960-160761235:-|nuORF	LY75|p.S1527*|1|0.06|ENSG00000054219|chr2:159810645-159810645|G/-|frameshift_variant	LY75|p.S1527*|1|0.06|ENSG00000054219|chr2:159810645-159810645|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	510.29681396484375	2	510.296499	1018.57845	-1.0099	-0.00051533	3.2613	0.0016642	2.2514	0.0011489	510.2975374624307	100.23	1.1904	99.401	99.162	100.35	-0.83051					37	23	3	0	0	0	0.29717	1	9161	9161		63.306	5.8536	1	376860			13856	1206	11257	11274	15306	15306					0.06989922725654196
GGRRRAVTF	9	Unmodified	_GGRRRAVTF_					0	0	0		LY75|p.S1527*|1|0.06|ENSG00000054219|chr2:159810645-159810645|G/-|frameshift_variant;ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75;ENST00000484559.1_1_2:160728960-160761235:-|nuORF	LY75|p.S1527*|1|0.06|ENSG00000054219|chr2:159810645-159810645|G/-|frameshift_variant	LY75|p.S1527*|1|0.06|ENSG00000054219|chr2:159810645-159810645|G/-|frameshift_variant	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	510.296499	1018.57845	-0.54448	-0.00027785	3.0622	0.0015626	2.5177	0.0012848	510.29735156137053	101.7	1.1457	99.43	99.304	100.45	-2.2665	-0.0029449	-0.00021907	NaN	63.306	32	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	518170			13857	1206	11257	11274							0.06989922725654196
GGSDLKTLLL	10	Unmodified	_GGSDLKTLLL_					0	0	0		ENST00000311417.6_1_3:178785505-178789764:-|nuORF	ENST00000311417.6_1_3:178785505-178789764:-|nuORF	ENST00000311417.6_1_3:178785505-178789764:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.80352783203125	2	508.802957	1015.59136	-0.34238	-0.0001742	1.6189	0.00082368	1.2765	0.00064948	508.8036315522624	22.043	1.1992	20.704	20.473	21.672	-1.3386					60	27	3	0	0	0	0.74374	1	296	296		25.574	0.12388	1	236460			13858	10299	11258	11275	15307	15307					0.08418896274520193
GGSGGGGGC	9	Unmodified	_GGSGGGGGC_					0	0	0			REV__ENST00000339738.9_1_20:30458201-30458438:-|nuORF	REV__ENST00000339738.9_1_20:30458201-30458438:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	607.353759765625	1	608.2093	607.202024	-0.87129	-0.00052993	-3.0171	-0.001835	-3.8884	-0.0023649	608.2096011804448	46.542	3.1823	43.833	42.547	45.729	-2.7097					96	63	2	0	0	0	0.027462	1	2675	2675		25.45	3.7478	1	16454	+		13859	24616	11259	11276	15308	15308					-0.11728929167406932
GGSGTDRDVAH	11	Unmodified	_GGSGTDRDVAH_					0	0	0			REV__nc|ENSG00000148600|Q96JP9-2|CDHR1	REV__nc|ENSG00000148600|Q96JP9-2|CDHR1	MULTI-MSMS	OvCa9_classI_Rep2	2	536.2454223632812	2	536.244326	1070.4741	-0.69525	-0.00037282	3.4699	0.0018607	2.7747	0.0014879	536.246148469639	113.89	3.7057	113.77	113.37	117.07	-0.11777					126	74	2	0	0	0	0.41398	1	10821	10821		60.118	1.3363	1	608760	+		13860	20116	11260	11277	15309	15309					-0.05831868612381186
GGSGTDRDVAH	11	Unmodified	_GGSGTDRDVAH_					0	0	0			REV__nc|ENSG00000148600|Q96JP9-2|CDHR1	REV__nc|ENSG00000148600|Q96JP9-2|CDHR1	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.2459716796875	2	536.244326	1070.4741	-0.42872	-0.0002299	3.1688	0.0016992	2.74	0.0014693	536.2460282370151	114.83	3.7432	113.44	113.1	116.84	-1.3977					114	72	2	0	0	0	0.39237	1	10707	10707		61.691	6.9689	1	971930	+		13861	20116	11260	11277	15310	15310					-0.05831868612381186
GGSHQEDF	8	Unmodified	_GGSHQEDF_					0	0	0		ENST00000407537.5_1_22:19949237-19950204:+|nuORF	ENST00000407537.5_1_22:19949237-19950204:+|nuORF	ENST00000407537.5_1_22:19949237-19950204:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	439.1780700683594	2	438.677756	875.34096	1.0807	0.00047406	-1.818	-0.00079752	-0.73733	-0.00032345	438.6763043399398	129.12	0.79001	127.66	127.4	128.19	-1.4565					64	15	6	0	0	0	0.74754	1	12367	12367		27.882	9.5578	1	96001			13862	11497	11261	11278	15311	15311					-0.10169687998234167
GGSHQEDF	8	Unmodified	_GGSHQEDF_					0	0	0		ENST00000407537.5_1_22:19949237-19950204:+|nuORF	ENST00000407537.5_1_22:19949237-19950204:+|nuORF	ENST00000407537.5_1_22:19949237-19950204:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	438.677756	875.34096	1.9731	0.00086557	-3.0498	-0.0013379	-1.0767	-0.00047232	438.67595805145703	127.97	0.98653	127.74	127.39	128.38	-0.22697	0.058061	-0.00060237	NaN	27.882	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66305			13863	11497	11261	11278							-0.10169687998234167
GGSHQEDF	8	Unmodified	_GGSHQEDF_					0	0	0		ENST00000407537.5_1_22:19949237-19950204:+|nuORF	ENST00000407537.5_1_22:19949237-19950204:+|nuORF	ENST00000407537.5_1_22:19949237-19950204:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	438.677756	875.34096	1.1312	0.00049624	-1.315	-0.00057688	-0.18383	-8.0642E-05	438.6763020418977	128.73	0.83955	127.64	127.32	128.16	-1.0933	-0.040972	0.00091964	NaN	27.882	49	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76272			13864	11497	11261	11278							-0.10169687998234167
GGSLLKAQAL	10	Unmodified	_GGSLLKAQAL_					0	0	0			REV__tr|A0A7D6ZH01|A0A7D6ZH01_9CLOTYitTfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21090PE=4SV=1	REV__tr|A0A7D6ZH01|A0A7D6ZH01_9CLOTYitTfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21090PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	479.2889099121094	2	479.290017	956.565481	-1.152	-0.00055214	1.4231	0.00068206	0.27106	0.00012992	479.2905830575166	116.71	1.0385	116.58	116.27	117.31	-0.12869					45	20	3	0	0	0	0.50999	1	11184	11184		52.937	3.4952	1	230600	+		13865	32013	11262	11279	15312	15312					0.0854604682289164
GGSRKTSL	8	Unmodified	_GGSRKTSL_					0	0	0		ELF4|p.W251Dfs*11|1|0.24|ENSG00000102034|chrX:130071098-130071099|-/TC|frameshift_variant	ELF4|p.W251Dfs*11|1|0.24|ENSG00000102034|chrX:130071098-130071099|-/TC|frameshift_variant	ELF4|p.W251Dfs*11|1|0.24|ENSG00000102034|chrX:130071098-130071099|-/TC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	403.23223876953125	2	403.229959	804.445365	2.1395	0.00086272	2.7388	0.0011044	4.8783	0.0019671	403.2309156616357	86.891	2.0023	85.46	85.069	87.071	-1.4311					88	39	4	0	0	0	0.71369	1	7572	7572		40.573	1.5511	1	373290			13866	793	11263	11280	15313	15313					0.03532058549137673
GGSVSQEGAE	10	Unmodified	_GGSVSQEGAE_					0	0	0			REV__ENST00000439706.5_1_12:46662600-46662675:-|nuORF	REV__ENST00000439706.5_1_12:46662600-46662675:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	460.7019348144531	2	460.701429	919.388304	3.6993	0.0017043	-3.1529	-0.0014525	0.54637	0.00025171	460.69993588883796	25.12	1.0176	22.41	22.261	23.279	-2.7097					37	22	3	0	0	0	0.64697	1	217	217		36.447	0.82846	1	87303	+		13867	25826	11264	11281	15314	15314					-0.07461453517885275
GGTAKLPHQRL	11	Unmodified	_GGTAKLPHQRL_					0	0	0		ENSG00000100605|ENST00000267615|ITPK1	ENSG00000100605|ENST00000267615|ITPK1	ENSG00000100605|ENST00000267615|ITPK1	MULTI-MSMS	OvCa9_classI_Rep3	3	589.34130859375	2	589.343646	1176.67274	-4.3129	-0.0025418	3.0093	0.0017735	-1.3036	-0.00076827	589.3453728975387	144.79	3.9151	143.81	141.71	145.63	-0.97299					242	78	5	0	0	0	0.68757	1	12109	12109		33.922	3.6039	1	192050			13868	2090	11265	11282	15315	15315					0.09147016757128767
GGTVLIVPF	9	Unmodified	_GGTVLIVPF_					0	0	0		ENSG00000171505|ENST00000304880|OR1N1	ENSG00000171505|ENST00000304880|OR1N1	ENSG00000171505|ENST00000304880|OR1N1	MULTI-MSMS	OvCa9_classI_Rep2	2	451.770263671875	2	451.770929	901.527304	2.2751	0.0010278	-2.3266	-0.0010511	-0.051433	-2.3236E-05	451.7697415380278	107.92	1.326	107.7	107.39	108.72	-0.22498					71	26	4	0	0	0	0.22913	1	10103	10103		71.378	2.8932	1	374100			13869	7208	11266	11283	15316	15316					0.07260160908231228
GGVAGAAS	8	Unmodified	_GGVAGAAS_					0	0	0			REV__ENST00000275635.11_1_7:73630328-73634079:+|nuORF	REV__ENST00000275635.11_1_7:73630328-73634079:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	588.3187866210938	1	589.294016	588.28674	-0.35686	-0.0002103	-2.4572	-0.001448	-2.8141	-0.0016583	589.2903426979625	48.347	0.25739	45.239	45.039	45.296	-3.1077					5	4	2	0	0	0	0.028476	1	2644	2644		8.2313	0	1	9775.9	+		13870	24095	11267	11284	15317	15317					-0.023872353591400497
GGVESDCAGA	10	Unmodified	_GGVESDCAGA_					0	0	0		ENST00000474221.5_1_11:291561-291933:+|nuORF	ENST00000474221.5_1_11:291561-291933:+|nuORF	ENST00000474221.5_1_11:291561-291933:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1717834472656	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.69986	1	1541	1541		30.504	2.6214	1	60065			13871	12427	11268	11285	15318	15318					-0.10924467452787212
GGVKPRKP	8	Unmodified	_GGVKPRKP_					0	0	0			REV__ENST00000393313.5_1_7:127032565-127032634:-|nuORF	REV__ENST00000393313.5_1_7:127032565-127032634:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.752685546875	2	419.766512	837.518471	0.53084	0.00022283	-0.11165	-4.6866E-05	0.41919	0.00017596	419.7662800883799	62.411	0.60734	62.411	62.209	62.816	0					30	14	3	0	0	0	0.028476	1	5556	5556		3.6843	2.3567	1	1232800	+		13872	25278	11269	11286	15319	15319					0.0932123206241613
GGVRKLRR	8	Unmodified	_GGVRKLRR_					0	0	0			REV__ENST00000566104.1_1_16:67189803-67193780:-|nuORF	REV__ENST00000566104.1_1_16:67189803-67193780:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	471.31170654296875	2	471.30941	940.604266	-1.3467	-0.0006347	3.8236	0.0018021	2.4769	0.0011674	471.31115558776486	33.805	2.3785	31.096	30.823	33.201	-2.7097					116	47	5	0	0	0	0.74679	1	1327	1327		28.254	1.5614	1	1913400	+		13873	27697	11270	11287	15320	15320					0.13158816967927578
GGVTLSGG	8	Unmodified	_GGVTLSGG_					0	0	0		ENST00000496771.5_1_X:99891236-99891587:-|nuORF	ENST00000496771.5_1_X:99891236-99891587:-|nuORF	ENST00000496771.5_1_X:99891236-99891587:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	646.847412109375	1	647.335881	646.328604	1.9257	0.0012466	-0.27903	-0.00018062	1.6467	0.0010659	647.3335599188243	119.97	0.26005	119.97	119.88	120.14	0					9	5	2	0	0	0	0.028476	1	13790	13790		42.474	0	1	42208			13874	12796	11271	11288	15321	15321					-0.008706796706064779
GGWRSPPAC	9	Unmodified	_GGWRSPPAC_					0	0	0			REV__ENST00000346348.7_1_6:86303399-86303597:-|nuORF	REV__ENST00000346348.7_1_6:86303399-86303597:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.75421142578125	2	465.716162	929.41777	-0.014219	-6.622E-06	-1.2294	-0.00057254	-1.2436	-0.00057916	465.71541898369645	56.578	1.1639	53.283	52.668	53.832	-3.2944					39	22	2	0	0	0	0.027462	1	3615	3615		45.952	7.1458	1	61299	+		13875	24699	11272	11289	15322	15322					-0.049761679827497574
GGYKDVISKI	10	Unmodified	_GGYKDVISKI_					0	0	0			REV__tr|A0A7D6VR58|A0A7D6VR58_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04190PE=4SV=1	REV__tr|A0A7D6VR58|A0A7D6VR58_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04190PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	540.3137817382812	2	540.308406	1078.60226	2.0586	0.0011123	0.15872	8.5756E-05	2.2174	0.0011981	540.308604768976	118	1.26	118	117.7	118.96	0					86	26	4	0	0	0	0.19075	1	13624	13624		95.815	15.361	1	11603000	+		13876	31389	11273	11290	15323	15323					0.06610298648797652
GGYLATKYLI	10	Unmodified	_GGYLATKYLI_					0	0	0		tr|A0A7D6ZYN4|A0A7D6ZYN4_9CLOTLacIfamilyDNA-bindingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02970PE=4SV=1	tr|A0A7D6ZYN4|A0A7D6ZYN4_9CLOTLacIfamilyDNA-bindingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02970PE=4SV=1	tr|A0A7D6ZYN4|A0A7D6ZYN4_9CLOTLacIfamilyDNA-bindingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02970PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	549.8145141601562	2	549.813325	1097.6121	1.5827	0.00087018	0.34306	0.00018862	1.9257	0.0010588	549.8134241640558	125.74	1.0711	125.74	125.49	126.56	0					47	22	3	0	0	0	0.59703	1	14554	14554		42.396	8.8806	1	599690			13877	35923	11274	11291	15324	15324					0.06719486654174034
GGYRAGSM	8	Oxidation (M)	_GGYRAGSM(Oxidation (M))_		GGYRAGSM(1)		GGYRAGSM(68)	0	0	1			REV__nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	REV__nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	MULTI-MSMS	OvCa99_classI_Rep5	1	407.6800842285156	2	407.679245	813.343937	3.2912	0.0013417	-0.062508	-2.5483E-05	3.2287	0.0013163	407.6790756390579	77.3	1.4538	77.3	77.044	78.498	0					79	34	4	0	0	0	0.57878	2	7777	7777;7805		68.485	18.46	1	8417100	+		13878	18666	11275	11292	15325;15326	15325		431			-0.07020136145069955
GGYRGVSF	8	Unmodified	_GGYRGVSF_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-MSMS	OvCa99_classI_Rep5	1	421.7127380371094	2	421.711402	841.408252	0.42091	0.0001775	0.054483	2.2976E-05	0.47539	0.00020048	421.7112881096414	58.215	1.0316	58.215	57.941	58.973	0					55	24	3	0	0	0	0.7224	2	4921	4921;4952		38.806	8.9646	1	3988200	+		13879	21178	11276	11293	15327;15328	15327					-0.01879612996629021
GHAGELLTPTP	11	Unmodified	_GHAGELLTPTP_					0	0	0		ENST00000455127.6_2_17:79780443-79780851:-|nuORF	ENST00000455127.6_2_17:79780443-79780851:-|nuORF	ENST00000455127.6_2_17:79780443-79780851:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.7862548828125	2	546.787838	1091.56112	-1.2902	-0.00070546	-2.1031	-0.00115	-3.3933	-0.0018554	546.7866680087051	41.972	1.7543	38.992	38.388	40.142	-2.9804					103	30	5	0	0	0	0.69808	1	1886	1886		30.318	1.1682	1	751890			13880	12095	11277	11294	15329	15329					0.01900537609321873
GHAIFILCIF	10	Unmodified	_GHAIFILCIF_					0	0	0			REV__ENST00000376811.5_2_9:77676183-77676378:-|nuORF	REV__ENST00000376811.5_2_9:77676183-77676378:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	567.315185546875	2	567.312438	1132.61032	2.0704	0.0011746	2.9798	0.0016905	5.0502	0.002865	567.3139739099872	57.536	1.95	54.41	53.788	55.738	-3.1264					89	52	3	0	0	0	0.73286	1	1721	1721		26.796	1.222	1	66904	+		13881	25106	11278	11295	15330	15330					0.04932154364564667
GHALVLPAGR	10	Unmodified	_GHALVLPAGR_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-SECPEP	OvCa9_classI_Rep2	2	495.7527770996094	2	495.795801	989.577048	-0.17163	-8.5094E-05	-0.068785	-3.4103E-05	-0.24041	-0.0001192	495.79557814645585	69.594	1.0507	66.974	66.715	67.766	-2.6203					37	20	2	0	0	0	0.026939	1	5587	5587		11.511	0	1	125520			13882	6293	11279	11296	15331	15331					0.0818428863688041
GHAYLKEWLWW	11	Unmodified	_GHAYLKEWLWW_					0	0	0		NIPA2|p.T249Lfs*13|1|0.08|ENSG00000140157|chr15:22866509-22866509|A/-|frameshift_variant;ENSG00000140157|ENST00000337451|NIPA2	NIPA2|p.T249Lfs*13|1|0.08|ENSG00000140157|chr15:22866509-22866509|A/-|frameshift_variant	NIPA2|p.T249Lfs*13|1|0.08|ENSG00000140157|chr15:22866509-22866509|A/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.8046875	3	496.918945	1487.73501	0.10435	5.1855E-05	2.362	0.0011737	2.4663	0.0012256	496.9210972713881	57.78	0.16806	57.78	57.691	57.859	0					5	3	2	0	0	0	0.026403	1	4873	4873		15.333	0.63944	1	83468			13883	4826	11280	11297	15332	15332					0.010647431054621848
GHDNFHLGFW	10	Unmodified	_GHDNFHLGFW_					0	0	0		ENST00000422625.5_1_3:190231879-190272481:+|nuORF	ENST00000422625.5_1_3:190231879-190272481:+|nuORF	ENST00000422625.5_1_3:190231879-190272481:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.2352600097656	3	410.521074	1228.54139	1.1205	0.00046001	0.44556	0.00018291	1.5661	0.00064292	410.5212239912233	46.62	1.0945	46.62	46.284	47.379	0					35	24	2	0	0	0	0.026975	1	3266	3266		46.457	7.7032	1	191870			13884	11696	11281	11298	15333	15333					-0.06373793610760004
GHELKRGPL	9	Unmodified	_GHELKRGPL_					0	0	0			REV__ENST00000502854.5_1_5:176829295-176830776:-|nuORF	REV__ENST00000502854.5_1_5:176829295-176830776:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.26544189453125	2	503.793258	1005.57196	0.15271	7.6936E-05	-1.0363	-0.00052209	-0.8836	-0.00044515	503.7931535672337	46.347	0.47585	46.347	46.069	46.545	0					17	10	3	0	0	0	0.027462	1	3260	3260		24.203	7.7296	1	159360	+		13885	26831	11282	11299	15334	15334					0.06939984774271579
GHEWLVALMQ	10	Unmodified	_GHEWLVALMQ_					0	0	0			REV__ENSG00000186513|ENST00000641291|OR9Q2	REV__ENSG00000186513|ENST00000641291|OR9Q2	MULTI-MSMS	OvCa9_classI_Rep3	3	592.3024291992188	2	592.300059	1182.58556	-1.1031	-0.00065338	2.2793	0.00135	1.1761	0.00069663	592.301413895625	81.905	2.5111	79.609	78.932	81.443	-2.2963					125	50	5	0	0	0	0.53885	1	4573	4573		49.442	7.0454	1	2078200	+		13886	22595	11283	11300	15335	15335					0.0015747449119771773
GHGGKGKVTV	10	Unmodified	_GHGGKGKVTV_					0	0	0			REV__tr|A0A7D6ZXS2|A0A7D6ZXS2_9CLOTAmidohydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22965PE=4SV=1	REV__tr|A0A7D6ZXS2|A0A7D6ZXS2_9CLOTAmidohydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22965PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	470.271728515625	2	470.272158	938.529764	-3.0901	-0.0014532	3.1911	0.0015007	0.10101	4.7502E-05	470.2736065998923	146.16	1.8917	145.2	144.4	146.29	-0.95947					80	37	4	0	0	0	0.79213	1	12253	12253		19.997	1.6724	1	264540	+		13887	32343	11284	11301	15336	15336					0.058040093658974
GHGVPRKTP	9	Unmodified	_GHGVPRKTP_					0	0	0			REV__ENST00000437771.5_1_6:31619529-31620325:-|nuORF	REV__ENST00000437771.5_1_6:31619529-31620325:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.77105712890625	2	474.772326	947.530098	1.4458	0.0006864	-1.8304	-0.00086903	-0.38467	-0.00018263	474.7714054184023	37.259	2.3363	34.367	33.695	36.031	-2.8925					116	46	4	0	0	0	0.55588	1	1433	1433		37.159	3.6435	1	1197600	+		13888	25800	11285	11302	15337	15337					0.05423429085760745
GHGWRQTQ	8	Unmodified	_GHGWRQTQ_					0	0	0		ENSG00000168743|ENST00000379987|NPNT;nc|ENSG00000168743|Q6UXI9-6|NPNT;nc|ENSG00000168743|Q6UXI9-3|NPNT;nc|ENSG00000168743|Q6UXI9-2|NPNT;nc|ENSG00000168743|Q6UXI9-5|NPNT;nc|ENSG00000168743|Q6UXI9-4|NPNT	ENSG00000168743|ENST00000379987|NPNT	ENSG00000168743|ENST00000379987|NPNT	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.2681579589844	2	485.236107	968.457661	-0.76392	-0.00037068	-1.1122	-0.00053966	-1.8761	-0.00091034	485.23540467557314	39.911	0.53565	39.911	39.711	40.247	0					31	11	5	0	0	0	0.028476	1	2372	2372		16.473	0	1	522800			13889	6937	11286	11303	15338	15338					-0.02782904987816437
GHGYTGVE	8	Unmodified	_GHGYTGVE_					0	0	0			REV__ENST00000588708.5_1_19:38900682-38904049:-|nuORF	REV__ENST00000588708.5_1_19:38900682-38904049:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	410.2420959472656	2	410.185217	818.355882	1.1333	0.00046487	-0.77995	-0.00031992	0.35337	0.00014495	410.1848441385992	45.056	0.45063	45.056	44.795	45.245	0					14	9	2	0	0	0	0.028476	1	3086	3086		24.203	0	1	102430	+		13890	27892	11287	11304	15339	15339					-0.06056196130225544
GHHNGVTI	8	Unmodified	_GHHNGVTI_					0	0	0		ENSG00000100425|ENST00000404760|BRD1;ENST00000479985.1_1_22:50169237-50169760:-|nuORF;nc|ENSG00000100425|O95696|BRD1	ENSG00000100425|ENST00000404760|BRD1	ENSG00000100425|ENST00000404760|BRD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	417.2148132324219	2	417.714476	833.4144	2.2423	0.00093664	4.3816	0.0018302	6.6239	0.0027669	417.7161072165159	122.61	1.202	122.61	122.27	123.47	0					34	25	2	0	0	0	0.028476	1	14087	14087		20.482	0	1	67714			13891	2066	11288	11305	15340	15340					-0.008970947650823291
GHIKVLVC	8	Unmodified	_GHIKVLVC_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	OvCa9_classI_Rep4_	4	434.7606506347656	2	434.757298	867.500044	1.7873	0.00077704	2.594	0.0011278	4.3813	0.0019048	434.75831214384687	139.52	2.3534	138.02	137.27	139.63	-1.4952					101	45	4	0	0	0	0.74361	1	13601	13601		29.842	1.5873	1	874370			13892	2891	11289	11306	15341	15341					0.0609935409619311
GHILDKPT	8	Unmodified	_GHILDKPT_					0	0	0			REV__chr10:7799683-7799772|133|29.08|0.71|5.35|+|2|None,ATP5F1C|1	REV__chr10:7799683-7799772|133|29.08|0.71|5.35|+|2|None,ATP5F1C|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	440.2330322265625	2	440.747985	879.481417	-0.60605	-0.00026712	1.3403	0.00059074	0.73425	0.00032362	440.7482143448963	40.071	0.45181	37.117	36.863	37.315	-2.9541					12	8	2	0	0	0	0.028476	1	1673	1673		24.203	7.7296	1	11110	+		13893	15851	11290	11307	15342	15342					0.03685515725987898
GHILGPSQPL	10	Unmodified	_GHILGPSQPL_					0	0	0			REV__ENSG00000137501|ENST00000359152|SYTL2	REV__ENSG00000137501|ENST00000359152|SYTL2	MULTI-MSMS	OvCa9_classI_Rep3	3	509.78759765625	2	509.787641	1017.56073	-0.47398	-0.00024163	0.044135	2.25E-05	-0.42985	-0.00021913	509.7876879707187	99.387	1.1121	97.702	97.373	98.485	-1.685					62	21	4	0	0	0	0.42962	1	6691	6691		64.207	4.089	1	1006700	+		13894	19458	11291	11308	15343	15343					0.05265162680132107
GHILNDIRVGK	11	Unmodified	_GHILNDIRVGK_					0	0	0			REV__tr|A0A7D6ZJQ9|A0A7D6ZJQ9_9CLOTCysteinedesulfuraseIscSOS=ClostridiumintestinaleOX=36845GN=nifSPE=3SV=1	REV__tr|A0A7D6ZJQ9|A0A7D6ZJQ9_9CLOTCysteinedesulfuraseIscSOS=ClostridiumintestinaleOX=36845GN=nifSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3536376953125	2	611.356754	1220.69895	-3.1571	-0.0019301	2.0725	0.001267	-1.0847	-0.00066312	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.70142	1	12960	12960		29.17	3.596	1	666990	+		13895	32089	11292	11309	15344	15344					0.09743285928584555
GHIQRGGKPS	10	Unmodified	_GHIQRGGKPS_					0	0	0		tr|A0A553SIE3|A0A553SIE3_NIACI6-phosphofructokinaseOS=NialliacirculansOX=1397GN=CEQ21_14695PE=3SV=1	tr|A0A553SIE3|A0A553SIE3_NIACI6-phosphofructokinaseOS=NialliacirculansOX=1397GN=CEQ21_14695PE=3SV=1	tr|A0A553SIE3|A0A553SIE3_NIACI6-phosphofructokinaseOS=NialliacirculansOX=1397GN=CEQ21_14695PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.80126953125	2	518.785964	1035.55738	0.99417	0.00051576	0.32825	0.00017029	1.3224	0.00068605	518.786577535015	86.406	0.39854	83.779	83.413	83.812	-2.6269					8	5	2	0	0	0	0.026956	1	7309	7309		26.693	0	1	37919			13896	33372	11293	11310	15345	15345					0.041019126261289784
GHKLLSKSLK	10	Unmodified	_GHKLLSKSLK_					0	0	0			REV__CPNE4|p.K512Nfs*44|1|0.06|ENSG00000196353|chr3:131542560-131542560|T/-|frameshift_variant	REV__CPNE4|p.K512Nfs*44|1|0.06|ENSG00000196353|chr3:131542560-131542560|T/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.315185546875	2	555.853316	1109.69208	-0.54702	-0.00030406	-0.15379	-8.5486E-05	-0.70081	-0.00038955	555.8532120654725	39.801	0.25725	39.801	39.669	39.926	0					9	5	2	0	0	0	0.027117	1	2360	2360		16.473	0.83134	1	139080	+		13897	16037	11294	11311	15346	15346					0.14161973048021537
GHKTSQVSAH	10	Unmodified	_GHKTSQVSAH_					0	0	0		ENST00000397820.4_1_19:10980033-10980441:+|nuORF	ENST00000397820.4_1_19:10980033-10980441:+|nuORF	ENST00000397820.4_1_19:10980033-10980441:+|nuORF	MSMS	OvCa99_classI_Rep5	1	525.8804321289062	2	526.267604	1050.52066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	151.32	1	151.32	150.82	151.82	0								0	0	0	0.15504	1	17717	17717		44.117	1.7207	1				13898	11354	11295	11312	15347	15347					-0.0025838399044459948
GHLIEPPPQC	10	Unmodified	_GHLIEPPPQC_					0	0	0			REV__nc|ENSG00000203710|P17927|CR1	REV__nc|ENSG00000203710|P17927|CR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.298583984375	2	545.771134	1089.52771	-0.02469	-1.3475E-05	1.9699	0.0010751	1.9452	0.0010616	545.7722273068997	31.782	1.0433	31.782	31.46	32.503	0					39	20	4	0	0	0	0.027117	1	1302	1302		23.042	0	1	1766300	+		13899	23108	11296	11313	15348	15348					-0.013467874342040886
GHLLFPGLPE	10	Unmodified	_GHLLFPGLPE_					0	0	0		ENSG00000043355|ENST00000376335|ZIC2	ENSG00000043355|ENST00000376335|ZIC2	ENSG00000043355|ENST00000376335|ZIC2	MULTI-MSMS	OvCa9_classI_Rep2	2	540.2987060546875	2	540.297842	1078.58113	-1.8908	-0.0010216	2.144	0.0011584	0.25319	0.0001368	540.2989536670705	38.535	2.9688	35.825	35.469	38.438	-2.7097					158	59	5	0	0	0	0.71192	1	1908	1908		29.15	3.6994	1	1380400			13900	1128	11297	11314	15349	15349					0.04498333339961391
GHLLPPRCV	9	Unmodified	_GHLLPPRCV_					0	0	0			REV__nc|ENSG00000107485|P23771|GATA3	REV__nc|ENSG00000107485|P23771|GATA3	MULTI-SECPEP	OvCa9_classI_Rep3	3	495.2977294921875	2	496.278929	990.543305	-0.61626	-0.00030584	0.07557	3.7504E-05	-0.54069	-0.00026834	496.2783127307559	89.512	0.45625	87.432	87.239	87.696	-2.0805					11	8	2	0	0	0	0.027462	1	5486	5486		28.254	5.2118	1	9534.4	+		13901	17846	11298	11315	15350	15350					0.04765543873475053
GHLLRIPCN	9	Unmodified	_GHLLRIPCN_					0	0	0			REV__nc|ENSG00000144827|Q9NUJ1-2|ABHD10	REV__nc|ENSG00000144827|Q9NUJ1-2|ABHD10	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.83697509765625	2	511.781836	1021.54912	-0.5634	-0.00028834	-2.0989	-0.0010742	-2.6623	-0.0013625	512.2830633222219	75.269	0.97584	73.325	72.925	73.901	-1.944					30	18	2	0	0	0	0.027462	1	6208	6208		24.203	0	1	9096.6	+		13902	19938	11299	11316	15351	15351					0.039206423851283034
GHLQLTGGELM	11	Unmodified	_GHLQLTGGELM_					0	0	0			REV__ENST00000526766.1_1_11:112051775-112051817:+|nuORF	REV__ENST00000526766.1_1_11:112051775-112051817:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2888793945312	2	578.294973	1154.57539	-7.6021	-0.0043963	-1.6299	-0.00094256	-9.232	-0.0053388	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.71498	1	13692	13692		24.519	2.5593	1	1429200	+		13903	27146	11300	11317	15352	15352					0.004288667659466228
GHLTLRPRSP	10	Unmodified	_GHLTLRPRSP_					0	0	0			REV__ENST00000602529.1_1_1:228463255-228463756:-|nuORF	REV__ENST00000602529.1_1_1:228463255-228463756:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3298950195312	2	567.330539	1132.64652	-0.48412	-0.00027465	-0.73588	-0.00041748	-1.22	-0.00069214	567.3299446868054	145.54	4.8872	144.11	142.68	147.57	-1.4357					247	95	4	0	0	0	0.70152	1	14300	14300		30.318	6.795	1	208760	+		13904	28042	11301	11318	15353	15353					0.08550747585650242
GHLVLPVNTI	10	Unmodified	_GHLVLPVNTI_					0	0	0			REV__tr|A0A553SF85|A0A553SF85_NIACIClassIIfructose-1,6-bisphosphatealdolaseOS=NialliacirculansOX=1397GN=fbaPE=4SV=1	REV__tr|A0A553SF85|A0A553SF85_NIACIClassIIfructose-1,6-bisphosphatealdolaseOS=NialliacirculansOX=1397GN=fbaPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.81884765625	2	531.818941	1061.62333	0.089047	4.7357E-05	-3.7428	-0.0019905	-3.6538	-0.0019431	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.66721	1	13649	13649		34.173	2.6427	1	263230	+		13905	29546	11302	11319	15354	15354					0.09498308748334239
GHLYFLFDP	9	Unmodified	_GHLYFLFDP_					0	0	0		USH2A|p.R1578H|1|0.51|ENSG00000042781|chr1:216097108-216097108|C/T|missense_variant	USH2A|p.R1578H|1|0.51|ENSG00000042781|chr1:216097108-216097108|C/T|missense_variant	USH2A|p.R1578H|1|0.51|ENSG00000042781|chr1:216097108-216097108|C/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.7869262695312	2	554.776742	1107.53893	0.068265	3.7872E-05	-3.0464	-0.0016901	-2.9782	-0.0016522	554.7750680754837	56.848	0.46714	56.848	56.581	57.048	0					10	6	2	0	0	0	0.027462	1	4765	4765		26.796	6.7993	1	390450			13906	36293	11303	11320	15355	15355					-0.010536420684502446
GHNFIGLLL	9	Unmodified	_GHNFIGLLL_					0	0	0			REV__OR2M7|p.S21G|1|0.06|ENSG00000177186|chr1:248324508-248324508|T/C|missense_variant	REV__OR2M7|p.S21G|1|0.06|ENSG00000177186|chr1:248324508-248324508|T/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	492.2847595214844	2	492.287277	982.560001	-4.5363	-0.0022332	0.21652	0.00010659	-4.3198	-0.0021266	492.28737227483106	149.34	1.4054	148.39	148.05	149.46	-0.95119					58	27	4	0	0	0	0.64339	1	12638	12638		26.796	3.7536	1	182000	+		13907	29269	11304	11321	15356	15356					0.06802368031105743
GHPAVTTVT	9	Unmodified	_GHPAVTTVT_					0	0	0			REV__nc|ENSG00000137075|Q9H0F5-5|RNF38	REV__nc|ENSG00000137075|Q9H0F5-5|RNF38	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.290283203125	2	441.737617	881.460681	-0.46882	-0.00020709	-0.34096	-0.00015061	-0.80978	-0.00035771	441.73794484535193	69.203	0.8378	65.719	65.119	65.957	-3.4841					25	16	2	0	0	0	0.027462	1	5133	5133		40.573	12.69	1	22593	+		13908	19431	11305	11322	15357	15357					0.015209253463240202
GHPCGWSVP	9	Unmodified	_GHPCGWSVP_					0	0	0		ENST00000403710.5_1_22:19950294-19951749:+|nuORF	ENST00000403710.5_1_22:19950294-19951749:+|nuORF	ENST00000403710.5_1_22:19950294-19951749:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	470.2110595703125	2	470.210712	938.406871	2.1981	0.0010336	-1.1983	-0.00056346	0.99974	0.00047009	470.21001642698747	112.03	1.3309	110.92	110.6	111.93	-1.1038					73	26	4	0	0	0	0.44294	1	8170	8170		47.916	3.7988	1	545760			13909	11443	11306	11323	15358	15358					-0.06479570357021203
GHPCGWSVP	9	Unmodified	_GHPCGWSVP_					0	0	0		ENST00000403710.5_1_22:19950294-19951749:+|nuORF	ENST00000403710.5_1_22:19950294-19951749:+|nuORF	ENST00000403710.5_1_22:19950294-19951749:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	470.210712	938.406871	1.4839	0.00069775	-5.2665	-0.0024764	-3.7826	-0.0017786	470.20812104703657	111.3	0.44827	111.3	111.11	111.56	0	0.22149	-0.0045383	NaN	47.916	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99267			13910	11443	11306	11323							-0.06479570357021203
GHPIVSSFTF	10	Unmodified	_GHPIVSSFTF_					0	0	0			REV__ENST00000445816.5_1_15:44085996-44086706:+|nuORF	REV__ENST00000445816.5_1_15:44085996-44086706:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	546.2808227539062	2	546.279649	1090.54475	2.4235	0.0013239	-0.2809	-0.00015345	2.1427	0.0011705	546.2795422248342	96.06	1.9895	96.06	95.577	97.566	0					105	46	4	0	0	0	0.58282	1	10555	10555		44.117	6.3053	1	10374000	+		13911	25893	11307	11324	15359	15359					0.003094564432331026
GHQDKDTTFDL	11	Unmodified	_GHQDKDTTFDL_					0	0	0		THBS2|p.R763Pfs*102|1|0.05|ENSG00000186340|chr6:169228253-169228253|C/-|frameshift_variant;ENSG00000186340|ENST00000617924|THBS2	THBS2|p.R763Pfs*102|1|0.05|ENSG00000186340|chr6:169228253-169228253|C/-|frameshift_variant	THBS2|p.R763Pfs*102|1|0.05|ENSG00000186340|chr6:169228253-169228253|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	638.7951049804688	2	638.793849	1275.57314	0.585	0.0003737	-0.8364	-0.00053429	-0.25139	-0.00016059	638.7932016834891	63.08	0.52045	63.08	62.816	63.337	0					29	12	3	0	0	0	0.10199	1	5660	5660		96.665	49.437	1	1458900			13912	8331	11308	11325	15360	15360					-0.05361890438143746
GHRGWPLPH	9	Unmodified	_GHRGWPLPH_					0	0	0		ENST00000453783.1_1_22:18775260-18778720:-|nuORF	ENST00000453783.1_1_22:18775260-18778720:-|nuORF	ENST00000453783.1_1_22:18775260-18778720:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.3086547851562	2	528.777942	1055.54133	-1.1574	-0.00061199	2.3182	0.0012258	1.1609	0.00061384	529.2796730076199	47.838	0.19766	45.128	45.034	45.231	-2.7097					5	3	2	0	0	0	0.027462	1	2933	2933		25.45	0	1	5564.8			13913	12077	11309	11326	15361	15361					0.015782511798761334
GHRWPAAQLG	10	Unmodified	_GHRWPAAQLG_					0	0	0			REV__ENST00000319296.9_1_16:30429606-30429675:+|nuORF	REV__ENST00000319296.9_1_16:30429606-30429675:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.341064453125	2	546.788507	1091.56246	-1.6093	-0.00087994	-0.67745	-0.00037042	-2.2867	-0.0012504	546.7879685897435	72.43	0.92306	69.034	68.813	69.736	-3.3961					30	18	2	0	0	0	0.026752	1	5651	5651		20.947	0	1	122270	+		13914	24433	11310	11327	15362	15362					0.020342164887324543
GHSEKLPLIL	10	Unmodified	_GHSEKLPLIL_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.D3716Mfs*6|1|0.06|ENSG00000157423|chr16:70868734-70868734|C/-|frameshift_variant	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8302612304688	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.72319	1	11760	11760		27.882	3.3631	1	308210			13915	5891	11311	11328	15363	15363					0.10094577919812764
GHSIKIILEL	10	Unmodified	_GHSIKIILEL_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-MSMS	OvCa9_classI_Rep2	2	561.845458984375	2	561.847699	1121.68084	-3.2197	-0.001809	-0.49496	-0.00027809	-3.7146	-0.002087	561.8472802195274	152.47	1.17	152.24	151.83	153	-0.22697					70	23	4	0	0	0	0.75313	1	15512	15512		24.519	2.5593	1	142980	+		13916	20520	11312	11329	15364	15364					0.12487150953893433
GHSMVFHAPSR	11	Unmodified	_GHSMVFHAPSR_					0	0	0		ENSG00000105429|ENST00000251268|MEGF8;nc|ENSG00000105429|Q7Z7M0-2|MEGF8;MEGF8|p.R1953Pfs*3|1|0.11|ENSG00000105429|chr19:42362390-42362391|-/C|frameshift_variant	ENSG00000105429|ENST00000251268|MEGF8	ENSG00000105429|ENST00000251268|MEGF8	MULTI-MSMS	OvCa99_classI_Rep5	1	409.20416259765625	3	409.201346	1224.58221	0.7539	0.0003085	2.0975	0.00085828	2.8514	0.0011668	409.20208095299535	70.466	0.74496	70.466	70.17	70.915	0					38	18	3	0	0	0	0.69455	1	6763	6763		27.644	5.8635	1	1774500			13917	2459	11313	11330	15365	15365					-0.02109775562826144
GHSNLVTMVK	10	Unmodified	_GHSNLVTMVK_					0	0	0			REV__tr|A0A553SMD4|A0A553SMD4_NIACINUDIXdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22360PE=4SV=1	REV__tr|A0A553SMD4|A0A553SMD4_NIACINUDIXdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22360PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.2800903320312	2	543.292233	1084.56991	-0.36575	-0.00019871	3.6509	0.0019835	3.2851	0.0017848	543.2940318777681	35.822	0.32216	35.822	35.707	36.029	0					8	6	2	0	0	0	0.027118	1	1854	1854		25.574	0	1	45845	+		13918	30318	11314	11331	15366	15366					0.031011879741527082
GHSPGRLPES	10	Unmodified	_GHSPGRLPES_					0	0	0			REV__ENST00000431648.8_2_18:14189184-14208232:+|nuORF	REV__ENST00000431648.8_2_18:14189184-14208232:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.80126953125	2	518.762155	1035.50976	-0.71896	-0.00037297	2.3372	0.0012124	1.6182	0.00083948	518.7627996858258	86.182	0.25231	83.961	83.785	84.037	-2.2204					5	4	2	0	0	0	0.026688	1	5093	5093		49.442	0	1	13476	+		13919	25723	11315	11332	15367	15367					-0.006577863647407867
GHSRKKANIAI	11	Unmodified	_GHSRKKANIAI_					0	0	0		nc|ENSG00000164251|P55085|F2RL1;ENSG00000164251|ENST00000296677|F2RL1	nc|ENSG00000164251|P55085|F2RL1	nc|ENSG00000164251|P55085|F2RL1	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8561401367188	2	597.856921	1193.69929	-2.7036	-0.0016164	1.7084	0.0010214	-0.99524	-0.00059501	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.65947	4	12425	12425;12444;12469;12497		39.253	12.56	1	591030			13920	6435	11316	11333	15368;15369;15370;15371	15368					0.11018705648461946
GHSRKKANIAI	11	Unmodified	_GHSRKKANIAI_					0	0	0		nc|ENSG00000164251|P55085|F2RL1;ENSG00000164251|ENST00000296677|F2RL1	nc|ENSG00000164251|P55085|F2RL1	nc|ENSG00000164251|P55085|F2RL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.856689453125	2	597.856921	1193.69929	-0.38237	-0.0002286	-0.55263	-0.00033039	-0.935	-0.00055899	597.8564103488146	145.14	4.0194	143.71	141.51	145.53	-1.4357					229	77	4	0	0	0	0.56722	2	14205	14205;14358		47.657	18.487	1	217250			13921	6435	11316	11333	15372;15373	15372					0.11018705648461946
GHTPLTITGF	10	Unmodified	_GHTPLTITGF_					0	0	0		PLXNA2|p.A1834Efs*28|1|0.04|ENSG00000076356|chr1:208028099-208028100|-/CTGCCGCCGTGCCTGCTCATCCTGCTCT|frameshift_variant;ENSG00000076356|ENST00000367033|PLXNA2	PLXNA2|p.A1834Efs*28|1|0.04|ENSG00000076356|chr1:208028099-208028100|-/CTGCCGCCGTGCCTGCTCATCCTGCTCT|frameshift_variant	PLXNA2|p.A1834Efs*28|1|0.04|ENSG00000076356|chr1:208028099-208028100|-/CTGCCGCCGTGCCTGCTCATCCTGCTCT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.3143920898438	2	522.279649	1042.54475	-0.80059	-0.00041813	0.09941	5.192E-05	-0.70118	-0.00036621	522.2812125159246	29.724	0.5982	29.724	29.337	29.935	0					15	11	2	0	0	0	0.027117	1	1072	1072		16.473	0	1	17252			13922	1556	11317	11334	15374	15374					0.025174564432290936
GHTYKVILA	9	Unmodified	_GHTYKVILA_					0	0	0		tr|A0A553SQ84|A0A553SQ84_NIACI6-carboxy-5,6,7,8-tetrahydropterinsynthaseOS=NialliacirculansOX=1397GN=queDPE=3SV=1	tr|A0A553SQ84|A0A553SQ84_NIACI6-carboxy-5,6,7,8-tetrahydropterinsynthaseOS=NialliacirculansOX=1397GN=queDPE=3SV=1	tr|A0A553SQ84|A0A553SQ84_NIACI6-carboxy-5,6,7,8-tetrahydropterinsynthaseOS=NialliacirculansOX=1397GN=queDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2905578613281	2	501.292559	1000.57057	-1.4695	-0.00073667	-2.6975	-0.0013522	-4.167	-0.0020889	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.67509	1	11043	11043		23.042	3.939	1	97838			13923	34132	11318	11335	15375	15375					0.07030350685511166
GHVATTGQI	9	Unmodified	_GHVATTGQI_					0	0	0		nc|ENSG00000186642|O00408-5|PDE2A;nc|ENSG00000186642|O00408-6|PDE2A;ENST00000539367.5_1_11:72287653-72353469:-|nuORF;nc|ENSG00000186642|O00408-2|PDE2A;nc|ENSG00000186642|O00408-4|PDE2A;nc|ENSG00000186642|O00408-3|PDE2A;ENSG00000186642|ENST00000334456|PDE2A	nc|ENSG00000186642|O00408-5|PDE2A	nc|ENSG00000186642|O00408-5|PDE2A	MULTI-MSMS	OvCa9_classI_Rep4_	4	442.2363586425781	2	442.235242	882.45593	-1.0791	-0.00047723	1.0634	0.00047025	-0.015772	-6.9749E-06	442.23567133771746	53.587	2.1485	50.379	49.844	51.992	-3.208					94	41	4	0	0	0	0.14739	1	3266	3266		85.359	11.385	1	1837400			13924	8352	11319	11336	15376	15376					0.010000412035765294
GHVLMACTLN	10	Unmodified	_GHVLMACTLN_					0	0	0			REV__ENSG00000180998|ENST00000321662|GPR137C	REV__ENSG00000180998|ENST00000321662|GPR137C	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7899169921875	2	529.759712	1057.50487	-0.88852	-0.0004707	-0.0099954	-5.2952E-06	-0.89851	-0.000476	529.7595865649938	49.996	1.0945	49.996	49.635	50.73	0					35	24	2	0	0	0	0.026915	1	3773	3773		27.882	0	1	480110	+		13925	22211	11320	11337	15377	15377					-0.02158129823328636
GHVPRPLRAS	10	Unmodified	_GHVPRPLRAS_					0	0	0		ENST00000513117.1_1_5:6633544-6656205:+|nuORF;ENST00000510531.5_1_5:6633544-6644998:+|nuORF;ENST00000274192.6_2_5:6633463-6652038:+|nuORF	ENST00000513117.1_1_5:6633544-6656205:+|nuORF	ENST00000513117.1_1_5:6633544-6656205:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3162841796875	2	545.317432	1088.62031	-2.8527	-0.0015556	1.4949	0.0008152	-1.3578	-0.00074042	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.71192	2	11795	11795;11921		29.15	1.2673	1	337600			13926	10016	11321	11338	15378;15379	15378					0.07954478414171717
GHVRVTLTVTR	11	Unmodified	_GHVRVTLTVTR_					0	0	0			REV__nc|ENSG00000155849|Q92556-3|ELMO1	REV__nc|ENSG00000155849|Q92556-3|ELMO1	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8679809570312	2	619.870028	1237.7255	-3.6059	-0.0022352	2.5915	0.0016064	-1.0145	-0.00062885	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.69099	1	12911	12911		32.751	4.669	1	664560	+		13927	28944	11322	11339	15380	15380					0.11614974819917734
GHVVIIVPN	9	Unmodified	_GHVVIIVPN_					0	0	0			REV__tr|A0A7D6ZV77|A0A7D6ZV77_9CLOTProlineiminopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02825PE=3SV=1	REV__tr|A0A7D6ZV77|A0A7D6ZV77_9CLOTProlineiminopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02825PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.28924560546875	2	474.287277	946.560001	2.9498	0.001399	4.2892	0.0020343	7.239	0.0034334	474.28922077273074	129.53	5.9099	128.07	125.62	131.53	-1.4565					195	118	2	0	0	0	0.65476	1	12517	12517		25.45	11.675	1	37993	+		13928	32242	11323	11340	15381	15381					0.08458368031085683
GHVVVCIFGDV	11	Unmodified	_GHVVVCIFGDV_					0	0	0		KCNMA1|p.N1094Tfs*8|1|0.39|ENSG00000156113|chr10:76891580-76891586|TCCCTAT/-|frameshift_variant;nc|ENSG00000156113|Q12791-5|KCNMA1;nc|ENSG00000156113|Q12791-4|KCNMA1;nc|ENSG00000156113|Q12791-2|KCNMA1;ENSG00000156113|ENST00000286628|KCNMA1;nc|ENSG00000156113|Q12791-7|KCNMA1;nc|ENSG00000156113|Q12791-3|KCNMA1	KCNMA1|p.N1094Tfs*8|1|0.39|ENSG00000156113|chr10:76891580-76891586|TCCCTAT/-|frameshift_variant	KCNMA1|p.N1094Tfs*8|1|0.39|ENSG00000156113|chr10:76891580-76891586|TCCCTAT/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	571.8069458007812	2	572.794609	1143.57467	-0.1903	-0.000109	1.0207	0.00058463	0.83036	0.00047563	572.7950300401088	90.505	0.51209	87.93	87.75	88.262	-2.575					13	9	2	0	0	0	0.025534	1	7825	7825		21.96	0	1	19533			13929	5820	11324	11341	15382	15382					0.008620721169108947
GHWDRMPEL	9	Unmodified	_GHWDRMPEL_					0	0	0		ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;nc|ENSG00000068724|Q9ULT0-3|TTC7A;ENST00000461601.5_1_2:47168680-47202193:+|nuORF	ENSG00000068724|ENST00000319190|TTC7A	ENSG00000068724|ENST00000319190|TTC7A	MULTI-MSMS	OvCa99_classI_Rep5	1	570.763916015625	2	570.766383	1139.51821	-0.68727	-0.00039227	-4.0178	-0.0022933	-4.7051	-0.0026855	570.7639375463239	41.921	5.4029	41.921	39.711	45.114	0					302	122	5	0	0	0	0.22961	2	2668	2668;2795		71.296	9.3404	1	2972500			13930	1395	11325	11342	15383;15384	15383					-0.045965557197177986
GHYLRPHLHP	10	Unmodified	_GHYLRPHLHP_					0	0	0			REV__chr2:99254290-99255020|272|10.47|0.15|6.13|-|ENST00000423306|LYG2,LYG2	REV__chr2:99254290-99255020|272|10.47|0.15|6.13|-|ENST00000423306|LYG2,LYG2	MULTI-SECPEP	OvCa9_classI_Rep2	2	410.2279357910156	3	409.55623	1225.64686	-0.25384	-0.00010396	2.7115	0.0011105	2.4576	0.0010065	409.5573461054863	38.68	0.99004	35.97	35.469	36.459	-2.7097					27	19	2	0	0	0	0.027147	1	1769	1769		24.519	0	1	19113	+		13931	16011	11326	11343	15385	15385					0.0430616730550355
GIAEFPSRGK	10	Unmodified	_GIAEFPSRGK_					0	0	0		nc|ENSG00000171560|P02671|FGA;ENSG00000171560|ENST00000403106|FGA;FGA|p.P565H|1|0.34|ENSG00000171560|chr4:154585735-154585735|G/T|missense_variant	nc|ENSG00000171560|P02671|FGA	nc|ENSG00000171560|P02671|FGA	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.291748046875	2	531.290548	1060.56654	-1.3749	-0.00073046	0.43411	0.00023064	-0.94077	-0.00049982	531.2910798400784	55.911	1.6226	52.616	52.26	53.883	-3.2944					81	31	5	0	0	0	0.44722	1	3550	3550		61.691	0.71934	1	514040			13932	7213	11327	11344	15386	15386					0.03868261191792044
GIAEFPSRGK	10	Unmodified	_GIAEFPSRGK_					0	0	0		nc|ENSG00000171560|P02671|FGA;ENSG00000171560|ENST00000403106|FGA;FGA|p.P565H|1|0.34|ENSG00000171560|chr4:154585735-154585735|G/T|missense_variant	nc|ENSG00000171560|P02671|FGA	nc|ENSG00000171560|P02671|FGA	MULTI-MATCH	OvCa9_classI_Rep2	2		2	531.290548	1060.56654	-1.8336	-0.00097418	1.0018	0.00053227	-0.83176	-0.00044191	531.2912465606371	55.494	1.2398	52.687	52.379	53.618	-2.8072	0.035108	0.0003321	NaN	61.691	57	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132710			13933	7213	11327	11344							0.03868261191792044
GIAGLFLVM	9	Unmodified	_GIAGLFLVM_					0	0	0			REV__ENSG00000084092|ENST00000264230|NOA1	REV__ENSG00000084092|ENST00000264230|NOA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	461.7401123046875	2	460.767332	919.52011	0.55911	0.00025762	3.753	0.0017292	4.3121	0.0019869	460.7688921456171	45.56	0.52095	45.56	45.413	45.934	0					21	11	3	0	0	0	0.027462	1	3145	3145		29.842	9.3597	1	408790	+		13934	17118	11328	11345	15387	15387					0.05713105036147681
GIALPELICTM	11	Unmodified	_GIALPELICTM_					0	0	0		ENSG00000167531|ENST00000301046|LALBA	ENSG00000167531|ENST00000301046|LALBA	ENSG00000167531|ENST00000301046|LALBA	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.7728881835938	2	580.806328	1159.5981	1.5462	0.00089803	-0.6706	-0.00038949	0.87558	0.00050854	580.8059483195581	128.84	0.51245	128.84	128.65	129.17	0					17	10	2	0	0	0	0.025496	1	14910	14910		49.442	15.269	1	166420			13935	6800	11329	11346	15388	15388					0.024687498392268026
GIASETHVVL	10	Unmodified	_GIASETHVVL_					0	0	0		nc|ENSG00000089250|P29475-2|NOS1;ENSG00000089250|ENST00000317775|NOS1;nc|ENSG00000089250|P29475-5|NOS1;nc|ENSG00000089250|P29475-4|NOS1	nc|ENSG00000089250|P29475-2|NOS1	nc|ENSG00000089250|P29475-2|NOS1	MULTI-MSMS	OvCa9_classI_Rep3	3	513.2887573242188	2	513.284931	1024.55531	0.44653	0.0002292	3.2609	0.0016738	3.7075	0.001903	513.2864764534966	118.83	1.7799	117.81	117.49	119.27	-1.0271					53	35	2	0	0	0	0.46756	1	8993	8993		58.782	5.4305	1	188900			13936	1818	11330	11347	15389	15389					0.04401439097682669
GIDLLENVP	9	Unmodified	_GIDLLENVP_					0	0	0		nc|ENSG00000103647|Q9UQ03-2|CORO2B;ENSG00000103647|ENST00000261861|CORO2B	nc|ENSG00000103647|Q9UQ03-2|CORO2B	nc|ENSG00000103647|Q9UQ03-2|CORO2B	MULTI-SECPEP	OvCa9_classI_Rep2	2	485.2825927734375	2	485.266207	968.517862	-1.8725	-0.00090864	-2.1905	-0.001063	-4.063	-0.0019716	485.26499060352296	35.05	0.24699	32.34	32.158	32.405	-2.7097					6	4	2	0	0	0	0.027462	1	1389	1389		37.159	18.897	1	9918.9			13937	2335	11331	11348	15390	15390					0.0323434783203993
GIEESLPI	8	Unmodified	_GIEESLPI_					0	0	0			REV__tr|A0A7D7A0K3|A0A7D7A0K3_9CLOTBifunctionaldiguanylatecyclase/phosphodiesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_10355PE=4SV=1	REV__tr|A0A7D7A0K3|A0A7D7A0K3_9CLOTBifunctionaldiguanylatecyclase/phosphodiesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_10355PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	428.76171875	2	429.234376	856.454199	0.36941	0.00015856	0.38495	0.00016523	0.75436	0.0003238	429.2343697484917	70.758	0.15823	70.758	70.681	70.839	0					5	3	2	0	0	0	0.028476	1	6794	6794		26.796	13.021	1	154180	+		13938	32450	11332	11349	15391	15391					0.02022987394957454
GIEKSFGKLL	10	Unmodified	_GIEKSFGKLL_					0	0	0			REV__tr|A0A553SGN1|A0A553SGN1_NIACIadeninedeaminaseOS=NialliacirculansOX=1397GN=CEQ21_11155PE=3SV=1	REV__tr|A0A553SGN1|A0A553SGN1_NIACIadeninedeaminaseOS=NialliacirculansOX=1397GN=CEQ21_11155PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	545.8113403320312	2	546.326599	1090.63865	-1.2401	-0.00067751	1.002	0.00054742	-0.23811	-0.00013009	546.3271066640121	135.55	1.1306	134.44	134.06	135.19	-1.1076					29	22	2	0	0	0	0.027284	1	10926	10926		20.947	0	1	14060	+		13939	29722	11333	11350	15392	15392					0.09695175545539314
GIEKSFGKLL	10	Unmodified	_GIEKSFGKLL_					0	0	0			REV__tr|A0A553SGN1|A0A553SGN1_NIACIadeninedeaminaseOS=NialliacirculansOX=1397GN=CEQ21_11155PE=3SV=1	REV__tr|A0A553SGN1|A0A553SGN1_NIACIadeninedeaminaseOS=NialliacirculansOX=1397GN=CEQ21_11155PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	546.326599	1090.63865	2.2211	0.0012135	-2.2872	-0.0012496	-0.066118	-3.6122E-05	546.3253376297753	135.88	0.68965	134.34	134.05	134.74	-1.5437	-0.053878	-0.0019108	NaN	14.865	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14801	+		13940	29722	11333	11350							0.09695175545539314
GIFLIWLLD	9	Unmodified	_GIFLIWLLD_					0	0	0		nc|ENSG00000187010|Q02161-5|RHD;nc|ENSG00000188672|P18577-6|RHCE	nc|ENSG00000187010|Q02161-5|RHD	nc|ENSG00000187010|Q02161-5|RHD	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.7760620117188	2	545.320786	1088.62702	0.79027	0.00043095	-1.1848	-0.00064611	-0.39457	-0.00021516	545.3189411280797	142.14	0.85019	142.14	141.88	142.73	0					29	16	3	0	0	0	0.027462	1	16607	16607		26.796	0	1	54268			13941	15222	11334	11351	15393	15393					0.08624978522175297
GIGDKDYDE	9	Unmodified	_GIGDKDYDE_					0	0	0			REV__nc|ENSG00000137801|P07996-2|THBS1	REV__nc|ENSG00000137801|P07996-2|THBS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.2776794433594	2	506.216911	1010.41927	2.2784	0.0011534	-3.7695	-0.0019082	-1.4911	-0.00075481	506.21346415691045	86.951	0.21085	86.951	86.761	86.972	0					6	4	2	0	0	0	0.027462	1	9184	9184		19.36	0	1	94826	+		13942	19477	11335	11352	15394	15394					-0.08552300203666618
GIGKHSLNLK	10	Unmodified	_GIGKHSLNLK_					0	0	0			REV__ENSG00000204583|ENST00000376608|LRCOL1	REV__ENSG00000204583|ENST00000376608|LRCOL1	MULTI-SECPEP	OvCa9_classI_Rep2	2	533.7991333007812	2	533.822015	1065.62948	-1.2803	-0.00068343	0.738	0.00039396	-0.54226	-0.00028947	533.8222760573811	46.017	1.4419	43.307	42.998	44.44	-2.7097					48	28	2	0	0	0	0.026873	1	2716	2716		70.816	14.095	1	185840	+		13943	23171	11336	11353	15395	15395					0.09928826979830774
GIGLIVAPQ	9	Unmodified	_GIGLIVAPQ_					0	0	0			REV__ENSG00000203867|ENST00000369519|RBM20	REV__ENSG00000203867|ENST00000369519|RBM20	MULTI-SECPEP	OvCa9_classI_Rep3	3	434.287353515625	2	434.268553	866.522553	-0.62778	-0.00027263	4.2246	0.0018346	3.5968	0.001562	434.2704567531158	84.94	0.48903	82.72	82.448	82.937	-2.2204					13	9	2	0	0	0	0.027134	1	4954	4954		55.504	0.72789	1	53834	+		13944	23116	11337	11354	15396	15396					0.08395276765452309
GIGLLKDKPIN	11	Unmodified	_GIGLLKDKPIN_					0	0	0			REV__tr|A0A553SR88|A0A553SR88_NIACIROKfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00435PE=3SV=1	REV__tr|A0A553SR88|A0A553SR88_NIACIROKfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00435PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3565063476562	2	584.358431	1166.70231	-1.7162	-0.0010029	-1.68	-0.00098173	-3.3962	-0.0019846	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.71498	1	14223	14223		24.519	3.682	1	833330	+		13945	30704	11338	11355	15397	15397					0.1256253598260173
GIGLSHVKEI	10	Unmodified	_GIGLSHVKEI_					0	0	0		tr|A0A553SHT2|A0A553SHT2_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_13545PE=4SV=1	tr|A0A553SHT2|A0A553SHT2_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_13545PE=4SV=1	tr|A0A553SHT2|A0A553SHT2_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_13545PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2852172851562	2	526.808574	1051.60259	-0.32286	-0.00017008	0.81151	0.00042751	0.48866	0.00025743	526.8081228034173	52.425	0.26262	52.425	52.347	52.61	0					7	5	2	0	0	0	0.02676	1	4117	4117		33.922	1.9668	1	106950			13946	33308	11339	11356	15398	15398					0.07885718368675043
GIGLYIAISR	10	Unmodified	_GIGLYIAISR_					0	0	0			REV__nc|ENSG00000001626|P13569-2|CFTR	REV__nc|ENSG00000001626|P13569-2|CFTR	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8167724609375	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.73378	1	13880	13880		26.693	4.733	1	166960	+		13947	16362	11340	11357	15399	15399					0.09498308748311501
GIGTSRLL	8	Unmodified	_GIGTSRLL_					0	0	0		tr|A0A7D6ZV68|A0A7D6ZV68_9CLOTBglGfamilytranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02720PE=4SV=1	tr|A0A7D6ZV68|A0A7D6ZV68_9CLOTBglGfamilytranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02720PE=4SV=1	tr|A0A7D6ZV68|A0A7D6ZV68_9CLOTBglGfamilytranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02720PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	409.53765869140625	2	408.750527	815.486502	0.47947	0.00019599	-0.17385	-7.1062E-05	0.30562	0.00012492	408.75028455091234	50.574	0.53123	50.574	50.332	50.863	0					22	11	3	0	0	0	0.028476	1	3863	3863		18.324	5.3652	1	355130			13948	35793	11341	11358	15400	15400					0.07137819588615457
GIGVLRNT	8	Unmodified	_GIGVLRNT_					0	0	0		tr|A0A553SFR3|A0A553SFR3_NIACIFAAhydrolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09365PE=3SV=1	tr|A0A553SFR3|A0A553SFR3_NIACIFAAhydrolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09365PE=3SV=1	tr|A0A553SFR3|A0A553SFR3_NIACIFAAhydrolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09365PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.7583923339844	2	415.248152	828.481751	-0.084878	-3.5245E-05	-0.71165	-0.00029551	-0.79653	-0.00033076	415.24783576064783	28.365	0.24917	28.365	28.19	28.439	0					6	4	2	0	0	0	0.028476	1	913	913		19.36	3.7182	1	11893			13949	33066	11342	11359	15401	15401					0.06064935445840547
GIHQTLGGY	9	Unmodified	_GIHQTLGGY_					0	0	0		ENSG00000082293|ENST00000620364|COL19A1	ENSG00000082293|ENST00000620364|COL19A1	ENSG00000082293|ENST00000620364|COL19A1	MULTI-MSMS	OvCa9_classI_Rep2	2	473.2423095703125	2	473.243067	944.47158	-1.2197	-0.00057723	1.2228	0.00057867	0.0030476	1.4423E-06	473.24345691842643	53.714	1.8932	50.9	50.479	52.372	-2.8139					103	37	4	0	0	0	0.46377	1	3631	3631		45.952	0	1	437470			13950	1676	11343	11360	15402	15402					-0.0028767227936441486
GIHVFAVLL	9	Unmodified	_GIHVFAVLL_					0	0	0		nc|ENSG00000079931|Q6UVY6-2|MOXD1;MOXD1|p.A576Efs*33|1|0.05|ENSG00000079931|chr6:132297268-132297268|G/-|frameshift_variant;ENSG00000079931|ENST00000367963|MOXD1	nc|ENSG00000079931|Q6UVY6-2|MOXD1	nc|ENSG00000079931|Q6UVY6-2|MOXD1	MULTI-MSMS	OvCa9_classI_Rep3	3	484.7982482910156	2	484.80002	967.585488	-0.83207	-0.00040339	-4.1359	-0.0020051	-4.968	-0.0024085	484.7981247180956	97.675	2.4444	95.916	95.105	97.55	-1.7595					95	47	4	0	0	0	0.42921	1	6511	6511		49.211	1.5535	1	1805800			13951	1624	11344	11361	15403	15403					0.10039842553510425
GIIAMLMGLN	10	Unmodified	_GIIAMLMGLN_					0	0	0		tr|A0A7D6W3I1|A0A7D6W3I1_9CLOTTerminaselargesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_10165PE=4SV=1	tr|A0A7D6W3I1|A0A7D6W3I1_9CLOTTerminaselargesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_10165PE=4SV=1	tr|A0A7D6W3I1|A0A7D6W3I1_9CLOTTerminaselargesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_10165PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2695922851562	2	516.782656	1031.55076	2.2494	0.0011625	0.09503	4.911E-05	2.3444	0.0012116	516.7820341039412	86.763	0.5414	86.763	86.389	86.931	0					27	12	3	0	0	0	0.026697	1	9172	9172		45.952	1.8352	1	1270100			13952	35453	11345	11362	15404	15404					0.03624515358910685
GIIAMLMGLN	10	Unmodified	_GIIAMLMGLN_					0	0	0		tr|A0A7D6W3I1|A0A7D6W3I1_9CLOTTerminaselargesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_10165PE=4SV=1	tr|A0A7D6W3I1|A0A7D6W3I1_9CLOTTerminaselargesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_10165PE=4SV=1	tr|A0A7D6W3I1|A0A7D6W3I1_9CLOTTerminaselargesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_10165PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	516.782656	1031.55076	0.15514	8.0173E-05	-3.1659	-0.0016361	-3.0108	-0.0015559	516.7800378542261	89.281	1.3948	87.15	86.559	87.954	-2.1309	0.10464	-0.001178	NaN	45.952	66	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79293			13953	35453	11345	11362							0.03624515358910685
GIIAMLMGLN	10	Unmodified	_GIIAMLMGLN_					0	0	0		tr|A0A7D6W3I1|A0A7D6W3I1_9CLOTTerminaselargesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_10165PE=4SV=1	tr|A0A7D6W3I1|A0A7D6W3I1_9CLOTTerminaselargesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_10165PE=4SV=1	tr|A0A7D6W3I1|A0A7D6W3I1_9CLOTTerminaselargesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_10165PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	516.782656	1031.55076	0.36363	0.00018792	-6.7785	-0.003503	-6.4149	-0.0033151	516.7788303384181	89.798	1.4057	87.223	86.704	88.11	-2.575	0.17788	-0.0049119	NaN	45.952	43	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87924			13954	35453	11345	11362							0.03624515358910685
GIIGMCHH	8	Unmodified	_GIIGMCHH_					0	0	0		AluSp_dup12528|chr4:108625371-108625684:-|7.098287236794439|0.0295741133308953|7.91|429.0|18|2|anti-sense	AluSp_dup12528|chr4:108625371-108625684:-|7.098287236794439|0.0295741133308953|7.91|429.0|18|2|anti-sense	AluSp_dup12528|chr4:108625371-108625684:-|7.098287236794439|0.0295741133308953|7.91|429.0|18|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	434.20269775390625	2	434.201833	866.389113	1.2394	0.00053816	2.0579	0.00089354	3.2973	0.0014317	434.2025952345841	127.91	1.6798	127.68	127.34	129.02	-0.22697					69	33	3	0	0	0	0.7543	1	12531	12531		24.504	2.5441	1	238510			13955	74	11346	11363	15405	15405					-0.04942608883538924
GIIIQNFSTR	10	Unmodified	_GIIIQNFSTR_					0	0	0		ENSG00000172260|ENST00000357731|NEGR1;nc|ENSG00000172260|Q7Z3B1-2|NEGR1	ENSG00000172260|ENST00000357731|NEGR1	ENSG00000172260|ENST00000357731|NEGR1	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.8049926757812	2	574.824755	1147.63496	0.031397	1.8048E-05	0.029991	1.724E-05	0.061389	3.5288E-05	574.8246548745155	69.225	0.79743	66.411	65.964	66.761	-2.8144					36	15	3	0	0	0	0.027001	1	3023	3023		35.152	20.287	1	23563			13956	7284	11347	11364	15406	15406					0.06704505771654112
GIILWALGY	9	Unmodified	_GIILWALGY_					0	0	0			REV__tr|A0A553SUN2|A0A553SUN2_NIACIAminoacidpermeaseOS=NialliacirculansOX=1397GN=CEQ21_02760PE=4SV=1	REV__tr|A0A553SUN2|A0A553SUN2_NIACIAminoacidpermeaseOS=NialliacirculansOX=1397GN=CEQ21_02760PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	503.27716064453125	2	503.292028	1004.5695	-1.3859	-0.00069752	-3.2221	-0.0016217	-4.608	-0.0023192	503.29027238881565	82.97	0.65027	80.673	80.381	81.032	-2.2963					30	12	3	0	0	0	0.027462	1	4752	4752		4.3163	0.63193	1	101900	+		13957	31099	11348	11365	15407	15407					0.06740136316591361
GIILYLTY	8	Unmodified	_GIILYLTY_					0	0	0			REV__nc|ENSG00000118705|P04844-2|RPN2	REV__nc|ENSG00000118705|P04844-2|RPN2	MULTI-SECPEP	OvCa9_classI_Rep3	3	477.8076477050781	2	478.278586	954.54262	1.3264	0.00063437	-4.2226	-0.0020196	-2.8963	-0.0013852	478.2764663729539	68.187	0.80127	65.373	65.212	66.013	-2.8144					27	15	2	0	0	0	0.028476	1	2928	2928		54.765	17.736	1	47580	+		13958	18412	11349	11366	15408	15408					0.06353027705426939
GIIQVTGVGI	10	Unmodified	_GIIQVTGVGI_					0	0	0			REV__tr|A0A553STM5|A0A553STM5_NIACIPectinesteraseOS=NialliacirculansOX=1397GN=CEQ21_05405PE=3SV=1	REV__tr|A0A553STM5|A0A553STM5_NIACIPectinesteraseOS=NialliacirculansOX=1397GN=CEQ21_05405PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.79388427734375	2	478.792392	955.570232	0.15994	7.658E-05	-1.1093	-0.0005311	-0.94931	-0.00045452	478.7917117307407	83.32	2.5938	80.657	80.145	82.738	-2.6629					118	53	4	0	0	0	0.48198	1	6937	6937		56.721	0	1	1612900	+		13959	30984	11350	11367	15409	15409					0.09066930965661868
GIKLLPPQKE	10	Unmodified	_GIKLLPPQKE_					0	0	0			REV__tr|A0A7D6ZY33|A0A7D6ZY33_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14895PE=3SV=1	REV__tr|A0A7D6ZY33|A0A7D6ZY33_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14895PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.8458251953125	2	561.847699	1121.68084	-2.5142	-0.0014126	-1.0339	-0.00058092	-3.5482	-0.0019935	561.8469845001015	152.99	1.31	151.56	151.24	152.55	-1.4351					96	32	4	0	0	0	0.7759	1	15203	15203		21.96	0	1	225430	+		13960	32358	11351	11368	15410	15410					0.12487150953870696
GIKLLPQNT	9	Unmodified	_GIKLLPQNT_					0	0	0			REV__tr|A0A553SPN5|A0A553SPN5_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_26760PE=4SV=1	REV__tr|A0A553SPN5|A0A553SPN5_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_26760PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.31561279296875	2	492.297842	982.581131	0.468	0.0002304	-0.37628	-0.00018524	0.091718	4.5153E-05	492.2973790880381	97.748	0.92992	96.789	96.414	97.344	-0.95856					47	18	4	0	0	0	0.027462	1	8897	8897		14.137	3.2716	1	309990	+		13961	30554	11352	11369	15411	15411					0.08914333339930636
GIKLSRNFGH	10	Unmodified	_GIKLSRNFGH_					0	0	0		tr|A0A553SIX5|A0A553SIX5_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_15685PE=4SV=1	tr|A0A553SIX5|A0A553SIX5_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_15685PE=4SV=1	tr|A0A553SIX5|A0A553SIX5_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_15685PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.7991333007812	2	564.817264	1127.61998	1.9737	0.0011148	-2.3955	-0.001353	-0.42175	-0.00023821	565.3177101223554	35.403	0.80048	32.554	32.19	32.99	-2.849					20	15	2	0	0	0	0.026849	1	1121	1121		32.812	6.1195	1	11160			13962	33437	11353	11370	15412	15412					0.06127058694301013
GIKPRRRLTD	10	Unmodified	_GIKPRRRLTD_					0	0	0			REV__ENSG00000116668|ENST00000367500|SWT1	REV__ENSG00000116668|ENST00000367500|SWT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3679809570312	2	606.370195	1210.72584	-0.26856	-0.00016285	-0.5906	-0.00035812	-0.85916	-0.00052097	606.369699493104	145.24	3.8933	143.8	141.64	145.53	-1.4357					226	74	4	0	0	0	0.81992	1	14053	14053		16.473	0	1	336140	+		13963	18309	11354	11371	15413	15413					0.12890394539772387
GIKQMLAHF	9	Unmodified	_GIKQMLAHF_					0	0	0		tr|A0A553SSF7|A0A553SSF7_NIACIHADfamilyphosphataseOS=NialliacirculansOX=1397GN=CEQ21_02890PE=4SV=1	tr|A0A553SSF7|A0A553SSF7_NIACIHADfamilyphosphataseOS=NialliacirculansOX=1397GN=CEQ21_02890PE=4SV=1	tr|A0A553SSF7|A0A553SSF7_NIACIHADfamilyphosphataseOS=NialliacirculansOX=1397GN=CEQ21_02890PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.2381591796875	2	522.786587	1043.55862	0.24625	0.00012873	-2.5592	-0.0013379	-2.313	-0.0012092	523.2884175287036	159.54	0.97182	159.54	159.24	160.21	0					25	19	2	0	0	0	0.027462	1	18771	18771		19.36	0	1	19198			13964	34372	11355	11372	15414	15414					0.03858410670682133
GILDHTCTI	9	Unmodified	_GILDHTCTI_					0	0	0			REV__tr|A0A553STT8|A0A553STT8_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05560PE=4SV=1	REV__tr|A0A553STT8|A0A553STT8_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05560PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.79290771484375	2	486.744585	971.474617	-0.21164	-0.00010301	-1.6682	-0.00081201	-1.8799	-0.00091502	486.74321905729573	73.459	0.47932	73.459	73.276	73.755	0					17	11	2	0	0	0	0.027462	1	7237	7237		40.573	0	1	412020	+		13965	31011	11356	11373	15415	15415					-0.012261652168717774
GILGNSSPSCP	11	Unmodified	_GILGNSSPSCP_					0	0	0		ENST00000274031.7_1_4:140430255-140430321:-|nuORF	ENST00000274031.7_1_4:140430255-140430321:-|nuORF	ENST00000274031.7_1_4:140430255-140430321:-|nuORF	MSMS	OvCa99_classI_Rep5	1	516.2272338867188	2	516.244949	1030.47534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.94	1	137.94	137.44	138.44	0								0	0	0	0.19474	1	16093	16093		27.882	1.1893	1				13966	10013	11357	11374	15416	15416					-0.038673705678547776
GILILQKGK	9	Unmodified	_GILILQKGK_					0	0	0			REV__tr|A0A7D6VX81|A0A7D6VX81_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10935PE=4SV=1	REV__tr|A0A7D6VX81|A0A7D6VX81_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10935PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.29095458984375	2	485.326402	968.638252	-0.27676	-0.00013432	-0.31796	-0.00015431	-0.59472	-0.00028863	485.3261516187936	46.02	0.69547	43.31	43.099	43.794	-2.7097					18	13	2	0	0	0	0.027392	1	2775	2775		63.306	9.9548	1	19728	+		13967	31768	11358	11375	15417	15417					0.1526780061633417
GILILQKGK	9	Unmodified	_GILILQKGK_					0	0	0			REV__tr|A0A7D6VX81|A0A7D6VX81_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10935PE=4SV=1	REV__tr|A0A7D6VX81|A0A7D6VX81_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10935PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.2914733886719	2	485.326402	968.638252	-0.44134	-0.0002142	-0.048446	-2.3512E-05	-0.48979	-0.00023771	485.3263349999442	46.645	0.82303	43.573	43.294	44.117	-3.0724					29	15	3	0	0	0	0.027392	1	2497	2497		73.975	10.668	1	43215	+		13968	31768	11358	11375	15418	15418					0.1526780061633417
GILISANVAV	10	Unmodified	_GILISANVAV_					0	0	0			REV__tr|A0A7D6ZYP8|A0A7D6ZYP8_9CLOTChromatetransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_03450PE=3SV=1	REV__tr|A0A7D6ZYP8|A0A7D6ZYP8_9CLOTChromatetransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_03450PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	478.79229736328125	2	478.792392	955.570232	0.14193	6.7955E-05	-1.2477	-0.00059739	-1.1058	-0.00052944	478.7916935444692	82.342	2.8721	80.713	80.198	83.07	-1.6293					121	56	4	0	0	0	0.6104	1	7031	7031		40.778	0	1	897530	+		13969	32384	11359	11376	15419	15419					0.09066930965650499
GILLIPPQ	8	Unmodified	_GILLIPPQ_					0	0	0		ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	MULTI-MSMS	OvCa9_classI_Rep4_	4	425.7752380371094	2	425.773471	849.53239	-0.54738	-0.00023306	3.7264	0.0015866	3.179	0.0013535	425.7749745888364	69.607	2.0379	66.126	65.811	67.849	-3.4812					126	41	5	0	0	0	0.72922	1	5227	5227		37.028	7.1869	1	3927600			13970	8305	11360	11377	15420	15420					0.10160464770854105
GILNILMLL	9	Unmodified	_GILNILMLL_					0	0	0			REV__ENST00000496589.5_1_3:160102313-160102388:-|nuORF	REV__ENST00000496589.5_1_3:160102313-160102388:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.2926940917969	2	500.317189	998.619824	-1.2125	-0.00060666	-2.8301	-0.0014159	-4.0426	-0.0020226	500.3155754886789	106.41	1.1392	104.4	104.05	105.19	-2.0161					29	19	2	0	0	0	0.027462	1	9738	9738		24.203	4.8428	1	52224	+		13971	26762	11361	11378	15421	15421					0.1204592265012252
GILNILMLL	9	Unmodified	_GILNILMLL_					0	0	0			REV__ENST00000496589.5_1_3:160102313-160102388:-|nuORF	REV__ENST00000496589.5_1_3:160102313-160102388:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	500.317189	998.619824	-0.83849	-0.00041951	-3.6264	-0.0018144	-4.4649	-0.0022339	500.31480060682026	105.08	0.79277	104.64	104.46	105.25	-0.43642	0.10828	-0.00038587	NaN	31.955	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47368	+		13972	26762	11361	11378							0.1204592265012252
GILNILMLL	9	Unmodified	_GILNILMLL_					0	0	0			REV__ENST00000496589.5_1_3:160102313-160102388:-|nuORF	REV__ENST00000496589.5_1_3:160102313-160102388:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	500.317189	998.619824	0.13474	6.7412E-05	-4.0269	-0.0020147	-3.8922	-0.0019473	500.31492478442846	105.91	1.1464	104.56	104.2	105.34	-1.3482	0.029294	-0.00078662	NaN	31.955	45	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50551	+		13973	26762	11361	11378							0.1204592265012252
GILSGGRFVL	10	Unmodified	_GILSGGRFVL_					0	0	0		ENST00000295324.3_1_2:37873937-37898648:-|nuORF	ENST00000295324.3_1_2:37873937-37898648:-|nuORF	ENST00000295324.3_1_2:37873937-37898648:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8036804199219	2	509.805834	1017.59712	-0.41042	-0.00020923	-3.6368	-0.0018541	-4.0473	-0.0020633	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.64063	1	13624	13624		37.159	1.5408	1	150140			13974	10121	11362	11379	15422	15422					0.08902039576844345
GILWYLLGFL	10	Unmodified	_GILWYLLGFL_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-SECPEP	OvCa9_classI_Rep4_	4	597.3179321289062	2	597.84971	1193.68487	0.14968	8.9488E-05	-0.12564	-7.5114E-05	0.024042	1.4374E-05	597.8476223597111	121.64	0.45876	120.29	119.95	120.41	-1.3479					13	8	2	0	0	0	0.027147	1	11463	11463		26.796	0	1	10822			13975	4670	11363	11380	15423	15423					0.09577240447629265
GILWYLLGFL	10	Unmodified	_GILWYLLGFL_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-MATCH	OvCa9_classI_Rep2	2		2	597.84971	1193.68487	-1.6656	-0.00099577	-1.366	-0.00081666	-3.0316	-0.0018124	597.8478682749645	120.42	0.34579	120.25	120.09	120.43	-0.17137	0.030554	0.00088591	NaN	35.201	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8022.1			13976	4670	11363	11380							0.09577240447629265
GILWYLLGFL	10	Unmodified	_GILWYLLGFL_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-MATCH	OvCa9_classI_Rep3	3		2	597.84971	1193.68487	2.4945	0.0014914	-4.1063	-0.0024549	-1.6117	-0.00096357	598.3499707576688	121.14	0.57608	120.12	119.96	120.54	-1.0271	-0.10286	-0.0023906	NaN	35.201	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10710			13977	4670	11363	11380							0.09577240447629265
GINNRVLR	8	Unmodified	_GINNRVLR_					0	0	0		nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A;ENSG00000198826|ENST00000361627|ARHGAP11A	nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A	nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.2854919433594	2	471.2856	940.556647	1.6625	0.00078349	-1.633	-0.00076962	0.029432	1.3871E-05	471.2846913754622	36.696	1.0457	33.804	33.546	34.591	-2.8925					44	20	3	0	0	0	0.69415	1	1281	1281		44.531	0	1	249520			13978	8884	11364	11381	15424	15424					0.0839911797708055
GINNRVLR	8	Unmodified	_GINNRVLR_					0	0	0		nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A;ENSG00000198826|ENST00000361627|ARHGAP11A	nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A	nc|ENSG00000198826|Q6P4F7-3|ARHGAP11A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	471.2856	940.556647	-2.6516	-0.0012497	2.3936	0.0011281	-0.25795	-0.00012157	471.286629630218	36.828	0.83836	34.118	33.942	34.781	-2.7097	0.15716	0.0020466	NaN	44.531	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77601			13979	8884	11364	11381							0.0839911797708055
GINPHVLQI	9	Unmodified	_GINPHVLQI_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.7920227050781	2	495.790184	989.565815	0.11554	5.7282E-05	-0.5364	-0.00026594	-0.42086	-0.00020866	495.7898670510585	98.333	1.2222	95.955	95.675	96.898	-2.3786					50	23	3	0	0	0	0.12365	1	8754	8754		90.777	31.995	1	366380			13980	2788	11365	11382	15425	15425					0.0706146654274562
GINPHVLQI	9	Unmodified	_GINPHVLQI_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MATCH	OvCa9_classI_Rep2	2		2	495.790184	989.565815	0.3624	0.00017967	-1.1476	-0.00056896	-0.78518	-0.00038928	495.7895997338512	96.86	1.2298	95.902	95.629	96.859	-0.95857	-0.1418	-0.00030952	NaN	90.777	52	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	319590			13981	2788	11365	11382							0.0706146654274562
GINPTVIK	8	Unmodified	_GINPTVIK_					0	0	0		tr|A0A553SNW4|A0A553SNW4_NIACIUridylatekinaseOS=NialliacirculansOX=1397GN=pyrHPE=3SV=1	tr|A0A553SNW4|A0A553SNW4_NIACIUridylatekinaseOS=NialliacirculansOX=1397GN=pyrHPE=3SV=1	tr|A0A553SNW4|A0A553SNW4_NIACIUridylatekinaseOS=NialliacirculansOX=1397GN=pyrHPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	421.25885009765625	2	421.260728	840.506903	0.1688	7.111E-05	-3.1201	-0.0013144	-2.9513	-0.0012433	421.2592965587955	134.89	1.4682	134.66	133.66	135.13	-0.22696					55	29	3	0	0	0	0.74394	1	13339	13339		13.775	0.81615	1	378840			13982	33970	11366	11383	15426	15426					0.0802699024843605
GINVGTYRIY	10	Unmodified	_GINVGTYRIY_					0	0	0		nc|ENSG00000211650|A0A087WSX0|IGLV5-45	nc|ENSG00000211650|A0A087WSX0|IGLV5-45	nc|ENSG00000211650|A0A087WSX0|IGLV5-45	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.310546875	2	578.31148	1154.60841	-2.9942	-0.0017316	0.85135	0.00049235	-2.1429	-0.0012392	578.3118346791387	149.42	1.2353	147.99	147.64	148.88	-1.4344					62	24	3	0	0	0	0.73378	1	14742	14742		26.693	3.1702	1	130810			13983	15286	11367	11384	15427	15427					0.03728816880334307
GIQCPAILAA	10	Unmodified	_GIQCPAILAA_					0	0	0		ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.7639465332031	2	478.76532	955.516088	-0.72429	-0.00034677	-3.4026	-0.0016291	-4.1269	-0.0019758	478.76350088187746	45.817	0.99084	42.779	42.595	43.586	-3.0385					34	18	2	0	0	0	0.26259	1	2373	2373		85.359	22.053	1	565240			13984	2784	11368	11385	15428	15428					0.03655015542426554
GIQIKNCVRQ	10	Unmodified	_GIQIKNCVRQ_					0	0	0			REV__ENST00000361781.6_1_10:52226662-52279656:-|nuORF	REV__ENST00000361781.6_1_10:52226662-52279656:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	579.822265625	2	579.824232	1157.63391	-1.1632	-0.00067443	-1.7504	-0.0010149	-2.9136	-0.0016894	579.8231049615964	26.467	0.34948	26.467	26.342	26.692	0					11	6	3	0	0	0	0.78463	1	697	697		20.947	0	1	56449	+		13985	24863	11369	11386	15429	15429					0.06139968131083151
GIRGTFSLVI	10	Unmodified	_GIRGTFSLVI_					0	0	0		nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;MYLK|p.E1444Sfs*9|1|0.06|ENSG00000065534|chr3:123649056-123649056|C/-|frameshift_variant;ENST00000506361.5_1_3:123456168-123512688:-|nuORF;MYLK|p.G628Efs*4|1|0.04|ENSG00000065534|chr3:123709815-123709816|-/T|frameshift_variant;MYLK|p.S609Rfs*34|1|0.05|ENSG00000065534|chr3:123709871-123709871|A/-|frameshift_variant	nc|ENSG00000065534|Q15746-5|MYLK	nc|ENSG00000065534|Q15746-5|MYLK	MULTI-MSMS	OvCa9_classI_Rep3	3	531.81591796875	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.77039	1	11643	11643		22.58	1.6327	1	178650			13986	1330	11370	11387	15430	15430					0.09498308748334239
GIRSAIGVQTL	11	Unmodified	_GIRSAIGVQTL_					0	0	0			REV__nc|ENSG00000122778|Q9HCM3-2|KIAA1549	REV__nc|ENSG00000122778|Q9HCM3-2|KIAA1549	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.8307495117188	2	557.83258	1113.65061	-5.3848	-0.0030038	3.062	0.0017081	-2.3228	-0.0012957	557.8340443185826	159.37	0.89273	157.79	157.47	158.36	-1.5858					38	20	3	0	0	0	0.70142	1	15727	15727		29.17	3.596	1	65515	+		13987	18613	11371	11388	15431	15431					0.09832792288693781
GIRWEVEPR	9	Unmodified	_GIRWEVEPR_					0	0	0		nc|ENSG00000118894|Q96G04-2|EEF2KMT;ENSG00000118894|ENST00000427587|EEF2KMT	nc|ENSG00000118894|Q96G04-2|EEF2KMT	nc|ENSG00000118894|Q96G04-2|EEF2KMT	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.8270263671875	2	571.309272	1140.60399	-0.30203	-0.00017255	-0.030052	-1.7169E-05	-0.33208	-0.00018972	571.3091710595096	51.448	0.91856	51.448	51.164	52.083	0					34	21	3	0	0	0	0.027462	1	3948	3948		32.812	0	1	352240			13988	3329	11372	11389	15432	15432					0.03931352457425419
GISGGRIHM	9	Unmodified	_GISGGRIHM_					0	0	0		ENST00000558958.1_1_15:65449172-65477491:-|nuORF;ENSG00000166855|ENST00000300107|CLPX	ENST00000558958.1_1_15:65449172-65477491:-|nuORF	ENST00000558958.1_1_15:65449172-65477491:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.26220703125	2	464.245086	926.47562	-0.41903	-0.00019453	-1.3711	-0.0006365	-1.7901	-0.00083104	464.24629393480853	79.194	0.23956	76.442	76.227	76.466	-2.7514					5	4	2	0	0	0	0.027462	1	6404	6404		31.955	17.291	1	17431			13989	6724	11373	11390	15433	15433					0.00944093942678137
GISLIKIESK	10	Unmodified	_GISLIKIESK_					0	0	0			REV__ENST00000480534.1_1_2:138722154-138746187:+|nuORF	REV__ENST00000480534.1_1_2:138722154-138746187:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2978515625	2	544.339707	1086.66486	-0.44497	-0.00024221	-0.57057	-0.00031058	-1.0155	-0.00055279	544.3395733957602	40.541	0.50664	40.541	40.247	40.754	0					18	10	3	0	0	0	0.02706	1	2485	2485		30.318	10.321	1	187600	+		13990	20193	11374	11391	15434	15434					0.12499444716991093
GISPRKRKIF	10	Unmodified	_GISPRKRKIF_					0	0	0		ENST00000427574.6_1_11:76156149-76164398:+|nuORF	ENST00000427574.6_1_11:76156149-76164398:+|nuORF	ENST00000427574.6_1_11:76156149-76164398:+|nuORF	MSMS	OvCa99_classI_Rep5	1	601.3801879882812	2	601.380032	1200.74551	NaN	NaN	NaN	NaN	NaN	NaN	NaN	146.19	1	146.19	145.69	146.69	0								0	0	0	0.13748	1	17099	17099		26.693	1.1189	1				13991	11759	11375	11392	15435	15435					0.1531677055054388
GITFLEKKCIR	11	Unmodified	_GITFLEKKCIR_					0	0	0		ENST00000551617.1_1_12:100599472-100601453:+|nuORF	ENST00000551617.1_1_12:100599472-100601453:+|nuORF	ENST00000551617.1_1_12:100599472-100601453:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	437.2748107910156	3	436.588319	1306.74313	-0.39531	-0.00017259	4.0138	0.0017524	3.6185	0.0015798	436.58973793830484	70.487	0.67702	67.006	66.738	67.415	-3.4812					34	13	4	0	0	0	0.025819	1	5303	5303		32.034	18.526	1	90385			13992	13601	11376	11393	15436	15436					0.10202554030570354
GITPPIDVLP	10	Unmodified	_GITPPIDVLP_					0	0	0		tr|A0A7D7ABU9|A0A7D7ABU9_9CLOTV-typeATPsynthasebetachainOS=ClostridiumintestinaleOX=36845GN=atpBPE=3SV=1	tr|A0A7D7ABU9|A0A7D7ABU9_9CLOTV-typeATPsynthasebetachainOS=ClostridiumintestinaleOX=36845GN=atpBPE=3SV=1	tr|A0A7D7ABU9|A0A7D7ABU9_9CLOTV-typeATPsynthasebetachainOS=ClostridiumintestinaleOX=36845GN=atpBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.2302856445312	2	511.30005	1020.58555	-0.013107	-6.7018E-06	-2.683	-0.0013718	-2.6961	-0.0013785	511.29727711783306	116.04	0.29689	114.67	114.45	114.75	-1.3645					6	5	2	0	0	0	0.026871	1	10794	10794		29.15	7.4472	1	6769.5			13993	36219	11377	11394	15437	15437					0.07607797762852897
GITPPIDVLP	10	Unmodified	_GITPPIDVLP_					0	0	0		tr|A0A7D7ABU9|A0A7D7ABU9_9CLOTV-typeATPsynthasebetachainOS=ClostridiumintestinaleOX=36845GN=atpBPE=3SV=1	tr|A0A7D7ABU9|A0A7D7ABU9_9CLOTV-typeATPsynthasebetachainOS=ClostridiumintestinaleOX=36845GN=atpBPE=3SV=1	tr|A0A7D7ABU9|A0A7D7ABU9_9CLOTV-typeATPsynthasebetachainOS=ClostridiumintestinaleOX=36845GN=atpBPE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	511.30005	1020.58555	0.91796	0.00046935	-8.8375	-0.0045186	-7.9196	-0.0040493	511.29527194457853	114.97	0.55975	114.97	114.65	115.21	0	0.14791	-0.0010569	NaN	29.15	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80055			13994	36219	11377	11394							0.07607797762852897
GITTSTDI	8	Unmodified	_GITTSTDI_					0	0	0		tr|A0A7D7AFE3|A0A7D7AFE3_9CLOTSingle-stranded-DNA-specificexonucleaseRecJOS=ClostridiumintestinaleOX=36845GN=recJPE=3SV=1	tr|A0A7D7AFE3|A0A7D7AFE3_9CLOTSingle-stranded-DNA-specificexonucleaseRecJOS=ClostridiumintestinaleOX=36845GN=recJPE=3SV=1	tr|A0A7D7AFE3|A0A7D7AFE3_9CLOTSingle-stranded-DNA-specificexonucleaseRecJOS=ClostridiumintestinaleOX=36845GN=recJPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.2284240722656	2	404.208358	806.402163	1.4592	0.00058981	-3.484	-0.0014083	-2.0248	-0.00081844	404.20791615888515	62.682	0.3591	62.682	62.501	62.86	0					10	8	2	0	0	0	0.028476	1	5604	5604		33.516	0	1	115940			13995	36253	11378	11395	15438	15438					-0.00878176018807153
GIVGLLFILSY	11	Unmodified	_GIVGLLFILSY_					0	0	0			REV__nc|ENSG00000160683|P32302-2|CXCR5	REV__nc|ENSG00000160683|P32302-2|CXCR5	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8561401367188	2	597.860275	1193.706	-3.1765	-0.0018991	-3.3266	-0.0019889	-6.5032	-0.003888	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.72459	1	14804	14804		20.947	6.0821	1	436470	+		13996	20668	11379	11396	15439	15439					0.11689205756488263
GIVHYDPT	8	Unmodified	_GIVHYDPT_					0	0	0		ENST00000508336.1_1_4:166469096-166469723:-|nuORF	ENST00000508336.1_1_4:166469096-166469723:-|nuORF	ENST00000508336.1_1_4:166469096-166469723:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	450.26690673828125	2	451.224342	900.434132	2.528	0.0011407	1.0858	0.00048994	3.6138	0.0016307	451.2246710198746	70.511	1.2789	67.941	67.462	68.741	-2.5707					41	24	2	0	0	0	0.028476	1	5724	5724		44.531	0	1	41275			13997	12943	11380	11397	15440	15440					-0.020067635450004673
GIVIGFFAY	9	Unmodified	_GIVIGFFAY_					0	0	0			REV__SLC9C2|p.I375Sfs*38|1|0.06|ENSG00000162753|chr1:173557432-173557432|T/-|frameshift_variant	REV__SLC9C2|p.I375Sfs*38|1|0.06|ENSG00000162753|chr1:173557432-173557432|T/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.3056640625	2	493.770929	985.527304	-1.0111	-0.00049923	3.9243	0.0019377	2.9132	0.0014385	493.7727287801016	26.731	0.65055	26.731	26.392	27.043	0					13	12	2	0	0	0	0.027462	1	732	732		14.664	0	1	42661	+		13998	20776	11381	11398	15441	15441					0.033961609082325594
GIVIPPATEK	10	Unmodified	_GIVIPPATEK_					0	0	0		nc|nan|Q5JPI3-2|C3orf38;ENSG00000179021|ENST00000318887|C3orf38	nc|nan|Q5JPI3-2|C3orf38	nc|nan|Q5JPI3-2|C3orf38	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.8052978515625	2	512.8055	1023.59645	3.2957	0.0016901	-3.2916	-0.0016879	0.0041479	2.1271E-06	512.8036235885786	131.04	1.1454	129.57	129.26	130.4	-1.4779					53	23	3	0	0	0	0.5675	1	12576	12576		45.972	8.8131	1	241460			13999	7793	11382	11399	15442	15442					0.08559200137142398
GIVIVQVN	8	Unmodified	_GIVIVQVN_					0	0	0		tr|A0A553SSR2|A0A553SSR2_NIACIMalonatedecarboxylasesubunitalphaOS=NialliacirculansOX=1397GN=mdcAPE=4SV=1	tr|A0A553SSR2|A0A553SSR2_NIACIMalonatedecarboxylasesubunitalphaOS=NialliacirculansOX=1397GN=mdcAPE=4SV=1	tr|A0A553SSR2|A0A553SSR2_NIACIMalonatedecarboxylasesubunitalphaOS=NialliacirculansOX=1397GN=mdcAPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	421.2596130371094	2	421.260728	840.506903	0.1688	7.111E-05	-3.1201	-0.0013144	-2.9513	-0.0012433	421.2592965587955	134.89	1.4682	134.66	133.66	135.13	-0.22696					55	29	3	0	0	0	0.75241	1	13365	13365		25.45	2.4077	1	378840			14000	34406	11383	11400	15443	15443					0.08026990248424681
GIVLRRVEST	10	Unmodified	_GIVLRRVEST_					0	0	0			REV__nc|ENSG00000128928|P26440-2|IVD	REV__nc|ENSG00000128928|P26440-2|IVD	MULTI-SECPEP	OvCa9_classI_Rep2	2	566.3099975585938	2	565.33803	1128.66151	-0.59359	-0.00033558	3.7408	0.0021148	3.1472	0.0017793	565.3399874613115	60.027	1.1537	57.257	56.983	58.136	-2.7702					44	21	3	0	0	0	0.026956	1	4379	4379		19.997	0	1	82381	+		14001	18879	11384	11401	15444	15444					0.10232194662967231
GIVMAFHLV	9	Unmodified	_GIVMAFHLV_					0	0	0		tr|A0A553SM16|A0A553SM16_NIACIDJ-1/PfpIfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21660PE=4SV=1	tr|A0A553SM16|A0A553SM16_NIACIDJ-1/PfpIfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21660PE=4SV=1	tr|A0A553SM16|A0A553SM16_NIACIDJ-1/PfpIfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21660PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.3052062988281	2	493.778231	985.541908	0.91224	0.00045044	1.0494	0.00051818	1.9617	0.00096862	493.7786804421208	113.3	1.6787	113.18	112.77	114.45	-0.12174					65	33	3	0	0	0	0.027462	1	10870	10870		39.021	12.329	1	62119			14002	33784	11385	11402	15445	15445					0.04855909784726009
GIVMAFHLV	9	Unmodified	_GIVMAFHLV_					0	0	0		tr|A0A553SM16|A0A553SM16_NIACIDJ-1/PfpIfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21660PE=4SV=1	tr|A0A553SM16|A0A553SM16_NIACIDJ-1/PfpIfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21660PE=4SV=1	tr|A0A553SM16|A0A553SM16_NIACIDJ-1/PfpIfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21660PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	493.778231	985.541908	0.21831	0.0001078	1.9537	0.00096467	2.172	0.0010725	493.7791317415328	114	0.71954	112.95	112.68	113.4	-1.055	-0.11077	0.00065254	NaN	29.842	35	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119110			14003	33784	11385	11402							0.04855909784726009
GIVPVTVIA	9	Unmodified	_GIVPVTVIA_					0	0	0		tr|A0A7D7AB03|A0A7D7AB03_9CLOTLrgBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13380PE=4SV=1	tr|A0A7D7AB03|A0A7D7AB03_9CLOTLrgBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13380PE=4SV=1	tr|A0A7D7AB03|A0A7D7AB03_9CLOTLrgBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13380PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	434.7807312011719	2	434.778754	867.542954	-0.57428	-0.00024968	3.6175	0.0015728	3.0432	0.0013231	434.7802329991387	60.785	2.8032	58.015	56.62	59.423	-2.7702					118	53	4	0	0	0	0.57242	1	4471	4471		35.201	0	1	373020			14004	36211	11386	11403	15446	15446					0.10388447425282266
GIWALLCV	8	Unmodified	_GIWALLCV_					0	0	0		ENSG00000160606|ENST00000292090|TLCD1	ENSG00000160606|ENST00000292090|TLCD1	ENSG00000160606|ENST00000292090|TLCD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	437.2748107910156	2	437.746399	873.478245	-0.53442	-0.00023394	3.9636	0.001735	3.4291	0.0015011	437.7481850142276	70.244	0.29513	66.762	66.639	66.934	-3.4812					8	5	2	0	0	0	0.028476	1	5303	5303		33.493	14.133	1	11953			14005	6075	11387	11404	15447	15447					0.036445493476321644
GIWGLITFI	9	Unmodified	_GIWGLITFI_					0	0	0		tr|A0A553SH41|A0A553SH41_NIACIECFtransporterScomponentOS=NialliacirculansOX=1397GN=CEQ21_12125PE=4SV=1	tr|A0A553SH41|A0A553SH41_NIACIECFtransporterScomponentOS=NialliacirculansOX=1397GN=CEQ21_12125PE=4SV=1	tr|A0A553SH41|A0A553SH41_NIACIECFtransporterScomponentOS=NialliacirculansOX=1397GN=CEQ21_12125PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	510.2972106933594	2	510.299853	1018.58515	-1.0098	-0.00051533	-3.3114	-0.0016898	-4.3213	-0.0022052	510.2975374624307	100.23	1.1904	99.401	99.162	100.35	-0.83051					37	23	3	0	0	0	0.39645	1	9167	9167		52.299	0.96372	1	376860			14006	33235	11388	11405	15448	15448					0.07660422833635039
GIWKIEKK	8	Unmodified	_GIWKIEKK_					0	0	0			REV__ENSG00000198176|ENST00000375370|TFDP1	REV__ENSG00000198176|ENST00000375370|TFDP1	MULTI-MSMS	OvCa9_classI_Rep2	2	501.3091125488281	2	501.310752	1000.60695	-1.322	-0.00066273	-2.8159	-0.0014116	-4.1379	-0.0020744	501.30910406164554	33.109	0.39941	30.399	30.222	30.622	-2.7097					18	7	3	0	0	0	0.68714	1	1150	1150		45.952	7.1458	1	78143	+		14007	22996	11389	11406	15449	15449					0.10667227582234773
GIWPSFKRE	9	Unmodified	_GIWPSFKRE_					0	0	0			REV__ENSG00000077080|ENST00000160382|ACTL6B	REV__ENSG00000077080|ENST00000160382|ACTL6B	MULTI-SECPEP	OvCa9_classI_Rep2	2	560.7894897460938	2	560.300916	1118.58728	-1.2283	-0.00068822	-2.407	-0.0013486	-3.6353	-0.0020368	560.29941624305	63.237	2.0842	60.493	59.548	61.632	-2.7444					103	39	5	0	0	0	0.027447	1	4864	4864		66.429	16.893	1	282400	+		14008	17001	11390	11407	15450	15450					0.03272851571477986
GIYYTRTV	8	Unmodified	_GIYYTRTV_					0	0	0			REV__HEPHL1|p.A683Gfs*12|1|0.45|ENSG00000181333|chr11:94086157-94086164|CCACAACA/-|frameshift_variant	REV__HEPHL1|p.A683Gfs*12|1|0.45|ENSG00000181333|chr11:94086157-94086164|CCACAACA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.7637023925781	2	486.761092	971.507631	0.05502	2.6782E-05	-1.2893	-0.00062756	-1.2342	-0.00060078	486.7605481568884	62.008	3.0077	58.55	57.166	60.174	-3.4577					165	61	5	0	0	0	0.65582	1	4347	4347		52.299	2.8576	1	868610	+		14009	22228	11391	11408	15451	15451					0.020737848974818007
GIYYTRTV	8	Unmodified	_GIYYTRTV_					0	0	0			REV__HEPHL1|p.A683Gfs*12|1|0.45|ENSG00000181333|chr11:94086157-94086164|CCACAACA/-|frameshift_variant	REV__HEPHL1|p.A683Gfs*12|1|0.45|ENSG00000181333|chr11:94086157-94086164|CCACAACA/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	486.761092	971.507631	-1.083	-0.00052718	0.41246	0.00020077	-0.67059	-0.00032642	486.761306026673	61.284	2.5818	58.524	57.512	60.094	-2.7593	-0.01274	0.0011143	NaN	52.299	118	49	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184580	+		14010	22228	11391	11408							0.020737848974818007
GKAFKVHL	8	Unmodified	_GKAFKVHL_					0	0	0		ENST00000586594.1_1_18:52544816-52555250:+|nuORF;ENSG00000041353|ENST00000262094|RAB27B	ENST00000586594.1_1_18:52544816-52555250:+|nuORF	ENST00000586594.1_1_18:52544816-52555250:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.27398681640625	2	450.276712	898.538872	-1.3925	-0.00062703	-3.0957	-0.0013939	-4.4883	-0.002021	450.2752805302911	148.27	1.3965	146.84	146.48	147.87	-1.435					87	28	5	0	0	0	0.75915	1	14638	14638		20.482	2.1574	1	541000			14011	1117	11392	11409	15452	15452					0.08554402722222676
GKAFSYYLP	9	Unmodified	_GKAFSYYLP_					0	0	0		ENSG00000145506|ENST00000296849|NKD2;ENST00000274150.4_1_5:1037707-1038485:+|nuORF	ENSG00000145506|ENST00000296849|NKD2	ENSG00000145506|ENST00000296849|NKD2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.7948608398438	2	523.271293	1044.52803	-2.7646	-0.0014467	-1.5452	-0.00080858	-4.3099	-0.0022552	523.2705509335827	88.424	0.50676	85.821	85.578	86.085	-2.6027					17	9	2	0	0	0	0.027448	1	7528	7528		35.618	0	1	33522			14012	5229	11393	11410	15453	15453					0.007549555572722966
GKAIALKLGK	10	Unmodified	_GKAIALKLGK_					0	0	0		tr|A0A7D6VV29|A0A7D6VV29_9CLOT3-oxoacyl-[acyl-carrier-protein]reductaseOS=ClostridiumintestinaleOX=36845GN=fabGPE=3SV=1	tr|A0A7D6VV29|A0A7D6VV29_9CLOT3-oxoacyl-[acyl-carrier-protein]reductaseOS=ClostridiumintestinaleOX=36845GN=fabGPE=3SV=1	tr|A0A7D6VV29|A0A7D6VV29_9CLOT3-oxoacyl-[acyl-carrier-protein]reductaseOS=ClostridiumintestinaleOX=36845GN=fabGPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.7898254394531	2	499.839677	997.664801	0.64095	0.00032037	-1.1233	-0.00056145	-0.48231	-0.00024108	499.8391181235646	36.625	0.7972	33.732	33.546	34.343	-2.8925					27	15	3	0	0	0	0.027174	1	1334	1334		9.7057	0	1	62093			14013	35211	11394	11411	15454	15454					0.16587489507651298
GKAIIRTPV	9	Unmodified	_GKAIIRTPV_					0	0	0		nc|ENSG00000171634|Q12830|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830-4|BPTF	nc|ENSG00000171634|Q12830|BPTF	nc|ENSG00000171634|Q12830|BPTF	MULTI-MSMS	OvCa9_classI_Rep3	3	477.8078918457031	2	477.808377	953.6022	1.9488	0.00093115	-1.9172	-0.00091603	0.031633	1.5115E-05	477.8073051342162	64.159	1.1625	61.166	60.836	61.999	-2.9933					49	22	3	0	0	0	0.61208	1	2492	2492		30.504	6.3009	1	160040			14014	7221	11395	11412	15455	15455					0.12354343439460536
GKAIKISGGNY	11	Unmodified	_GKAIKISGGNY_					0	0	0		tr|A0A7D6ZYT3|A0A7D6ZYT3_9CLOTUPF0251proteinHZF06_03755OS=ClostridiumintestinaleOX=36845GN=HZF06_03755PE=3SV=1	tr|A0A7D6ZYT3|A0A7D6ZYT3_9CLOTUPF0251proteinHZF06_03755OS=ClostridiumintestinaleOX=36845GN=HZF06_03755PE=3SV=1	tr|A0A7D6ZYT3|A0A7D6ZYT3_9CLOTUPF0251proteinHZF06_03755OS=ClostridiumintestinaleOX=36845GN=HZF06_03755PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	554.3096923828125	2	554.31148	1106.60841	-0.76251	-0.00042267	-1.8372	-0.0010184	-2.5997	-0.0014411	554.3103775723919	26.568	0.34972	26.568	26.442	26.792	0					14	6	3	0	0	0	0.69455	1	708	708		31.53	1.0262	1	97909			14015	35930	11396	11413	15456	15456					0.05936816880330298
GKAIVLVGR	9	Unmodified	_GKAIVLVGR_					0	0	0			REV__tr|A0A553SKW4|A0A553SKW4_NIACIStageIIIsporulationproteinAGOS=NialliacirculansOX=1397GN=spoIIIAGPE=4SV=1	REV__tr|A0A553SKW4|A0A553SKW4_NIACIStageIIIsporulationproteinAGOS=NialliacirculansOX=1397GN=spoIIIAGPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.28314208984375	2	456.803094	911.591636	-0.78859	-0.00036023	0.38244	0.0001747	-0.40615	-0.00018553	456.80311733562604	64.274	0.68966	64.274	63.854	64.544	0					35	16	3	0	0	0	0.027462	1	5796	5796		21.96	0	1	875080	+		14016	30156	11397	11414	15457	15457					0.1323036078504174
GKAMTQNIT	9	Unmodified	_GKAMTQNIT_					0	0	0		nc|ENSG00000081985|Q99665-2|IL12RB2;nc|ENSG00000081985|Q99665-3|IL12RB2;ENSG00000081985|ENST00000674203|IL12RB2	nc|ENSG00000081985|Q99665-2|IL12RB2	nc|ENSG00000081985|Q99665-2|IL12RB2	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.73187255859375	2	482.250034	962.485516	-0.29459	-0.00014207	-2.8293	-0.0013644	-3.1239	-0.0015065	482.2485773553988	35.884	0.27747	35.884	35.707	35.984	0					8	5	2	0	0	0	0.027426	1	1850	1850		47.657	0	1	47481			14017	1669	11398	11415	15458	15458					0.0027723715739966792
GKAPEKAVSHA	11	Unmodified	_GKAPEKAVSHA_					0	0	0			REV__ENSG00000123388|ENST00000546378|HOXC11	REV__ENSG00000123388|ENST00000546378|HOXC11	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.7603759765625	2	547.80128	1093.58801	-0.32015	-0.00017538	3.8594	0.0021142	3.5392	0.0019388	547.8031461333527	70.51	0.51419	70.51	70.286	70.8	0					24	12	2	0	0	0	0.025528	1	6751	6751		35.152	0	1	640880	+		14018	18638	11399	11416	15459	15459					0.044956462205163916
GKAQCPID	8	Unmodified	_GKAQCPID_					0	0	0			REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF	REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	415.5887145996094	2	416.205096	830.395638	-0.16478	-6.858E-05	0.27882	0.00011604	0.11404	4.7464E-05	416.2050310891024	58.419	1.2531	55.027	54.651	55.904	-3.392					42	24	3	0	0	0	0.028476	1	3857	3857		30.504	0	1	67023	+		14019	16864	11400	11417	15460	15460					-0.02634392451182066
GKARTIVEPAM	11	Unmodified	_GKARTIVEPAM_					0	0	0			REV__nc|ENSG00000085511|Q9Y6R4-2|MAP3K4	REV__nc|ENSG00000085511|Q9Y6R4-2|MAP3K4	MULTI-MSMS	OvCa99_classI_Rep5	1	586.8258666992188	2	586.82644	1171.63833	0.76579	0.00044939	-3.4204	-0.0020072	-2.6546	-0.0015578	586.8243055657107	153.39	2.2744	153.39	152.9	155.17	0					137	45	5	0	0	0	0.68399	1	17982	17982		35.152	3.6222	1	2850600	+		14020	17135	11401	11418	15461	15461					0.05937432554037514
GKATLMFI	8	Unmodified	_GKATLMFI_					0	0	0			REV__tr|A0A7D6VTG1|A0A7D6VTG1_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_20825PE=4SV=1	REV__tr|A0A7D6VTG1|A0A7D6VTG1_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_20825PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	440.7536926269531	2	440.751682	879.48881	0.90224	0.00039766	2.9912	0.0013184	3.8935	0.0017161	440.7530254847158	40.732	1.8562	40.732	40.386	42.242	0					112	41	5	0	0	0	0.50674	1	2524	2524		76.847	2.8719	1	19780000	+		14021	31602	11402	11419	15462	15462					0.044245320020763756
GKAVLIPK	8	Unmodified	_GKAVLIPK_					0	0	0		nc|ENSG00000144278|Q8IUC8-2|GALNT13;ENSG00000144278|ENST00000392825|GALNT13;nc|ENSG00000144278|Q8IUC8-3|GALNT13	nc|ENSG00000144278|Q8IUC8-2|GALNT13	nc|ENSG00000144278|Q8IUC8-2|GALNT13	MULTI-SECPEP	OvCa99_classI_Rep5	1	413.2688293457031	2	413.281463	824.548374	0.14605	6.0361E-05	1.3159	0.00054384	1.462	0.0006042	413.28351061811827	41.862	0.38809	41.862	41.594	41.982	0					12	8	2	0	0	0	0.028476	1	2656	2656		12.959	0	1	93706			14022	5138	11403	11420	15463	15463					0.1290817100775712
GKAYHGAAIL	10	Unmodified	_GKAYHGAAIL_					0	0	0			REV__nc|ENSG00000197694|Q13813-3|SPTAN1	REV__nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.8053894042969	2	500.782359	999.550165	-0.81619	-0.00040873	-2.3381	-0.0011709	-3.1543	-0.0015796	501.28348880534975	50.508	0.39492	50.508	50.245	50.64	0					12	8	2	0	0	0	0.026697	1	3834	3834		45.952	21.749	1	37297	+		14023	29086	11404	11421	15464	15464					0.050371800257153154
GKAYHGAAIL	10	Unmodified	_GKAYHGAAIL_					0	0	0			REV__nc|ENSG00000197694|Q13813-3|SPTAN1	REV__nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	500.782359	999.550165	-1.6245	-0.0008135	4.0351	0.0020207	2.4106	0.0012072	500.78022256270253	53.548	1.0931	50.734	50.182	51.275	-2.8139	0.11341	0.0031528	NaN	44.117	49	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22021	+		14024	29086	11404	11421							0.050371800257153154
GKCRVKGG	8	Unmodified	_GKCRVKGG_					0	0	0		ENST00000423995.5_1_1:32697415-32700590:-|nuORF	ENST00000423995.5_1_1:32697415-32700590:-|nuORF	ENST00000423995.5_1_1:32697415-32700590:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	402.7309875488281	2	402.729072	803.443591	2.0749	0.00083562	0.34017	0.000137	2.4151	0.00097262	402.729030490722	74.369	0.86996	74.369	74.135	75.005	0					45	21	3	0	0	0	0.73288	2	7351	7351;7382		35.201	8.4046	1	1921800			14025	11708	11406	11422	15465;15466	15465					0.034007262595423526
GKDANTLLL	9	Unmodified	_GKDANTLLL_					0	0	0			REV__ENSG00000172671|ENST00000344646|ZFAND4	REV__ENSG00000172671|ENST00000344646|ZFAND4	MULTI-MSMS	OvCa99_classI_Rep5	1	472.7752685546875	2	472.7742	943.533846	1.3741	0.00064965	0.76372	0.00036107	2.1378	0.0010107	472.7744790182857	79.127	0.64368	79.127	78.83	79.474	0					32	15	3	0	0	0	0.070405	1	8047	8047		107.01	5.4068	1	3152200	+		14026	21717	11407	11423	15467	15467					0.05982054068965681
GKDANTLLL	9	Unmodified	_GKDANTLLL_					0	0	0			REV__ENSG00000172671|ENST00000344646|ZFAND4	REV__ENSG00000172671|ENST00000344646|ZFAND4	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	472.7742	943.533846	1.3741	0.00064965	0.76372	0.00036107	2.1378	0.0010107	472.7744790182857	79.127	0.64368	79.127	78.83	79.474	0	0	0	NaN	107.01	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3152200	+		14027	21717	11407	11423							0.05982054068965681
GKDVTLDVGNL	11	Unmodified	_GKDVTLDVGNL_					0	0	0			REV__tr|A0A7D6VM39|A0A7D6VM39_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13765PE=4SV=1	REV__tr|A0A7D6VM39|A0A7D6VM39_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13765PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	565.81103515625	2	565.806228	1129.5979	2.3584	0.0013344	4.2138	0.0023842	6.5722	0.0037186	565.808550751945	87.674	0.70988	87.674	87.42	88.13	0					39	16	3	0	0	0	0.22834	1	9289	9289		76.17	17.94	1	1622500	+		14028	31124	11408	11424	15468	15468					0.038287894352379226
GKDVTLDVGNL	11	Unmodified	_GKDVTLDVGNL_					0	0	0			REV__tr|A0A7D6VM39|A0A7D6VM39_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13765PE=4SV=1	REV__tr|A0A7D6VM39|A0A7D6VM39_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13765PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	565.806228	1129.5979	1.0854	0.00061413	2.8764	0.0016275	3.9619	0.0022416	566.3094181678327	90.445	0.2569	87.87	87.75	88.007	-2.575	0.098114	-0.0014656	NaN	76.17	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24121	+		14029	31124	11408	11424							0.038287894352379226
GKEIKLEEL	9	Unmodified	_GKEIKLEEL_					0	0	0		nc|ENSG00000147874|Q7Z4H7-2|HAUS6;nc|ENSG00000147874|Q7Z4H7-3|HAUS6;ENSG00000147874|ENST00000380502|HAUS6	nc|ENSG00000147874|Q7Z4H7-2|HAUS6	nc|ENSG00000147874|Q7Z4H7-2|HAUS6	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.809814453125	2	529.808239	1057.60193	-1.6351	-0.00086631	1.0283	0.0005448	-0.60683	-0.0003215	529.8085286457653	81.385	1.3592	78.674	78.298	79.657	-2.7106					77	27	4	0	0	0	0.3249	1	6671	6671		60.118	7.1816	1	2054100			14030	5379	11409	11425	15469	15469					0.07542878928961727
GKETLKAIN	9	Unmodified	_GKETLKAIN_					0	0	0		ENSG00000144481|ENST00000324695|TRPM8	ENSG00000144481|ENST00000324695|TRPM8	ENSG00000144481|ENST00000324695|TRPM8	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.3050842285156	2	487.287474	972.560395	0.63386	0.00030887	2.9021	0.0014142	3.536	0.0017231	487.28907479972787	124.89	0.39439	124.66	124.42	124.81	-0.2359					9	7	2	0	0	0	0.027462	1	12147	12147		18.262	0	1	13866			14031	5153	11410	11426	15470	15470					0.07301742960282809
GKEVLYLVTE	10	Unmodified	_GKEVLYLVTE_					0	0	0			REV__TANC1|p.T1589Ifs*85|1|0.16|ENSG00000115183|chr2:159230192-159230192|C/-|frameshift_variant	REV__TANC1|p.T1589Ifs*85|1|0.16|ENSG00000115183|chr2:159230192-159230192|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	575.818603515625	2	575.821347	1149.62814	-1.9284	-0.0011104	-4.2487	-0.0024465	-6.1772	-0.003557	575.8188169351997	93.294	2.0645	91.332	90.932	92.997	-1.9617					117	40	4	0	0	0	0.58067	1	5975	5975		44.377	0	1	923250	+		14032	18224	11411	11427	15471	15471					0.05931148100444261
GKFFVGKFVKE	11	Unmodified	_GKFFVGKFVKE_					0	0	0			REV__tr|A0A553SNG4|A0A553SNG4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24425PE=4SV=1	REV__tr|A0A553SNG4|A0A553SNG4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24425PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	429.24993896484375	3	429.248291	1284.72304	1.0169	0.00043652	4.3404	0.0018631	5.3573	0.0022996	429.25019541218927	90.872	2.087	89.637	89.291	91.378	-1.2355					137	39	6	0	0	0	0.57493	9	8033	8033;8037;8049;8055;8061;8067;8074;8080;8088		46.955	11.459	1	2558200	+		14033	30422	11412	11428	15472;15473;15474;15475;15476;15477;15478;15479;15480	15472					0.09207126362252893
GKFTKNRVL	9	Unmodified	_GKFTKNRVL_					0	0	0		tr|A0A7D6ZHP0|A0A7D6ZHP0_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03685PE=4SV=1	tr|A0A7D6ZHP0|A0A7D6ZHP0_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03685PE=4SV=1	tr|A0A7D6ZHP0|A0A7D6ZHP0_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03685PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	531.8062744140625	2	531.824558	1061.63456	-0.91312	-0.00048562	1.2097	0.00064334	0.29656	0.00015772	531.8247788745385	78.3	1.3688	76.56	76.301	77.67	-1.7398					48	26	2	0	0	0	0.027441	1	6550	6550		58.782	11.125	1	52683			14034	35583	11413	11429	15481	15481					0.10621130842446291
GKFTKNRVL	9	Unmodified	_GKFTKNRVL_					0	0	0		tr|A0A7D6ZHP0|A0A7D6ZHP0_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03685PE=4SV=1	tr|A0A7D6ZHP0|A0A7D6ZHP0_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03685PE=4SV=1	tr|A0A7D6ZHP0|A0A7D6ZHP0_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03685PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	531.8075561523438	2	531.824558	1061.63456	0.17765	9.4477E-05	-0.55454	-0.00029492	-0.3769	-0.00020044	531.8244013526931	78.732	1.3517	76.38	76.098	77.45	-2.3527					46	26	2	0	0	0	0.027402	1	4224	4224		47.657	5.2612	1	71994			14035	35583	11413	11429	15482	15482					0.10621130842446291
GKGALQQALP	10	Unmodified	_GKGALQQALP_					0	0	0			REV__ENSG00000065060|ENST00000192788|BLTP3A	REV__ENSG00000065060|ENST00000192788|BLTP3A	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.7767333984375	2	491.787641	981.56073	0.087229	4.2898E-05	-1.0557	-0.00051917	-0.96845	-0.00047627	491.7872800000994	74.584	1.4593	72.613	72.062	73.521	-1.9711					42	27	2	0	0	0	0.026849	1	6204	6204		32.812	0	1	122300	+		14036	16783	11414	11430	15483	15483					0.06921162680123416
GKGCLLLSLP	10	Unmodified	_GKGCLLLSLP_					0	0	0			REV__ENST00000474550.5_1_2:101587368-101598935:+|nuORF	REV__ENST00000474550.5_1_2:101587368-101598935:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.71929931640625	2	500.79662	999.578688	-0.38436	-0.00019249	4.211	0.0021089	3.8266	0.0019164	500.7984087035766	40.72	0.8996	40.72	40.34	41.24	0					28	19	2	0	0	0	0.026553	1	2540	2540		39.253	6.4404	1	437580	+		14037	26346	11415	11431	15484	15484					0.07888161610628686
GKGCLLLSLP	10	Unmodified	_GKGCLLLSLP_					0	0	0			REV__ENST00000474550.5_1_2:101587368-101598935:+|nuORF	REV__ENST00000474550.5_1_2:101587368-101598935:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	500.79662	999.578688	0.12417	6.2186E-05	3.4438	0.0017246	3.568	0.0017868	500.79818198117925	43.343	0.84283	40.633	40.41	41.253	-2.7097	0.0073456	-0.00090782	NaN	39.253	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46540	+		14038	26346	11415	11431							0.07888161610628686
GKGCLLLSLP	10	Unmodified	_GKGCLLLSLP_					0	0	0			REV__ENST00000474550.5_1_2:101587368-101598935:+|nuORF	REV__ENST00000474550.5_1_2:101587368-101598935:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	500.79662	999.578688	-1.4826	-0.00074249	5.0327	0.0025204	3.5501	0.0017779	500.7989501334227	43.531	0.91235	40.524	40.326	41.238	-3.0074	-0.10167	0.00068365	NaN	39.253	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213360	+		14039	26346	11415	11431							0.07888161610628686
GKGCYTHPV	9	Unmodified	_GKGCYTHPV_					0	0	0			REV__ENSG00000143603|ENST00000271915|KCNN3	REV__ENSG00000143603|ENST00000271915|KCNN3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.8058776855469	2	481.231645	960.448736	0.079281	3.8152E-05	-0.65945	-0.00031735	-0.58017	-0.0002792	481.231513614488	87.05	0.39819	84.423	84.25	84.649	-2.6269					11	7	2	0	0	0	0.027462	1	7407	7407		24.203	0	1	17719	+		14040	19855	11416	11432	15485	15485					-0.03307014668507691
GKGCYTHPV	9	Unmodified	_GKGCYTHPV_					0	0	0			REV__ENSG00000143603|ENST00000271915|KCNN3	REV__ENSG00000143603|ENST00000271915|KCNN3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	481.231645	960.448736	-0.95281	-0.00045852	2.4689	0.0011881	1.5161	0.00072961	481.2331197226416	86.416	0.45129	84.225	84.116	84.568	-2.191	-0.099341	0.001758	NaN	24.203	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12382	+		14041	19855	11416	11432							-0.03307014668507691
GKGFPQLIGK	10	Unmodified	_GKGFPQLIGK_					0	0	0			REV__ENST00000524953.1_1_11:61110045-61110363:+|nuORF	REV__ENST00000524953.1_1_11:61110045-61110363:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.8125610351562	2	522.813659	1043.61277	-4.1208	-0.0021544	0.024018	1.2557E-05	-4.0968	-0.0021419	522.8135945226888	152.85	1.1432	151.42	151.08	152.23	-1.435					63	27	4	0	0	0	0.78463	1	15157	15157		20.947	0	1	215640	+		14042	27109	11417	11433	15486	15486					0.09270326093906078
GKGGAGGK	8	Unmodified	_GKGGAGGK_					0	0	0			REV__nc|ENSG00000150593|Q53EL6-2|PDCD4	REV__nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	632.3310546875	1	631.3522	630.344923	-0.41404	-0.00026141	2.7526	0.0017379	2.3386	0.0014765	631.3537923275611	117.52	2.0945	116.18	115.11	117.21	-1.3444					95	39	4	0	0	0	0.028476	1	10924	10924		12.207	3.3845	1	540700	+		14043	20195	11418	11434	15487	15487					0.01496446286137143
GKGGAGGK	8	Unmodified	_GKGGAGGK_					0	0	0			REV__nc|ENSG00000150593|Q53EL6-2|PDCD4	REV__nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MATCH	OvCa99_classI_Rep5	1		1	631.3522	630.344923	2.7499	0.0017362	4.0411	0.0025513	6.791	0.0042875	631.3552340944727	115.69	0.23573	115.69	115.54	115.77	0	-0.2725	0.00081772	NaN	12.207	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88087	+		14044	20195	11418	11434							0.01496446286137143
GKGGAGGK	8	Unmodified	_GKGGAGGK_					0	0	0			REV__nc|ENSG00000150593|Q53EL6-2|PDCD4	REV__nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MATCH	OvCa9_classI_Rep3	3		1	631.3522	630.344923	-0.39319	-0.00024824	2.7026	0.0017063	2.3094	0.0014581	631.3537553060014	117.05	2.9174	116.02	114.36	117.28	-1.0324	0.056304	-2.7319E-05	NaN	12.207	127	58	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	745260	+		14045	20195	11418	11434							0.01496446286137143
GKGGGGGG	8	Unmodified	_GKGGGGGG_					0	0	0		ENSG00000155816|ENST00000319653|FMN2;ENSG00000090372|ENST00000263280|STRN4;nc|ENSG00000090372|Q9NRL3-3|STRN4;ENSG00000183770|ENST00000648323|FOXL2;ENSG00000248713|ENST00000511828|C4orf54	ENSG00000155816|ENST00000319653|FMN2;ENSG00000090372|ENST00000263280|STRN4;REV__nc|ENSG00000100201|Q92841-3|DDX17;ENSG00000183770|ENST00000648323|FOXL2;REV__ENSG00000248713|ENST00000511828|C4orf54	ENSG00000155816|ENST00000319653|FMN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.271484375	1	546.26305	545.255774	-1.0832	-0.0005917	3.0109	0.0016447	1.9277	0.001053	546.2670353537256	34.809	0.13895	34.809	34.725	34.864	0					4	2	2	0	0	0	0.028476	1	1712	1712		4.3163	0	1	9875.4			14046	5802;1836;23485;28766;8105	11419	11435	15488	15488					-0.03504388673377434
GKGGRRRLP	9	Unmodified	_GKGGRRRLP_					0	0	0		ENST00000523202.5_1_8:28242642-28242861:-|nuORF	ENST00000523202.5_1_8:28242642-28242861:-|nuORF	ENST00000523202.5_1_8:28242642-28242861:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.2891845703125	2	498.812316	995.61008	-0.39713	-0.0001981	2.8188	0.0014061	2.4217	0.001208	498.8134613052831	58.237	0.7494	54.892	54.698	55.447	-3.3449					26	14	3	0	0	0	0.027462	1	3851	3851		10.866	0	1	65242			14047	13148	11420	11436	15489	15489					0.1120991547960557
GKGKGRNT	8	Unmodified	_GKGKGRNT_					0	0	0		ENSG00000165113|ENST00000376371|GKAP1;nc|ENSG00000165113|Q5VSY0-2|GKAP1	ENSG00000165113|ENST00000376371|GKAP1	ENSG00000165113|ENST00000376371|GKAP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	409.20416259765625	2	409.235576	816.456599	1.1728	0.00047997	4.1752	0.0017087	5.3481	0.0021886	409.23713815356484	70.613	0.35287	70.613	70.447	70.8	0					11	8	2	0	0	0	0.028476	1	6763	6763		23.042	0	1	102260			14048	6521	11421	11437	15490	15490					0.04102880643267781
GKGKIDIQPY	10	Unmodified	_GKGKIDIQPY_					0	0	0		TBC1D8B|p.A965P|1|0.53|ENSG00000133138|chrX:106870739-106870739|G/C|missense_variant	TBC1D8B|p.A965P|1|0.53|ENSG00000133138|chrX:106870739-106870739|G/C|missense_variant	TBC1D8B|p.A965P|1|0.53|ENSG00000133138|chrX:106870739-106870739|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	559.8136596679688	2	559.813856	1117.61316	-0.97774	-0.00054735	4.3631	0.0024425	3.3854	0.0018952	559.8160584775942	134.25	2.5628	133.13	132.52	135.08	-1.1226					125	51	4	0	0	0	0.62299	1	10882	10882		39.253	1.4413	1	225320			14049	32946	11422	11438	15491	15491					0.05905701023107213
GKGKLRFKT	9	Unmodified	_GKGKLRFKT_					0	0	0			REV__tr|A0A553SKJ3|A0A553SKJ3_NIACIChaperoneproteinDnaJOS=NialliacirculansOX=1397GN=dnaJPE=3SV=1	REV__tr|A0A553SKJ3|A0A553SKJ3_NIACIChaperoneproteinDnaJOS=NialliacirculansOX=1397GN=dnaJPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.801513671875	2	517.827101	1033.63965	1.0365	0.00053671	-4.4419	-0.0023002	-3.4055	-0.0017634	517.8252080804269	86.183	0.45031	83.537	83.243	83.693	-2.6463					11	8	2	0	0	0	0.027462	1	7297	7297		20.947	3.582	1	10325	+		14050	30130	11423	11439	15492	15492					0.12417434705071173
GKGKNKLP	8	Unmodified	_GKGKNKLP_					0	0	0		ENSG00000198718|ENST00000361462|TOGARAM1;ENST00000555945.1_1_14:45431624-45465140:+|nuORF;nc|ENSG00000198718|Q9Y4F4-2|TOGARAM1;ENST00000555607.1_1_14:45431624-45475488:+|nuORF;nc|ENSG00000198718|Q9Y4F4-3|TOGARAM1;nc|ENSG00000198718|Q9Y4F4|TOGARAM1	ENSG00000198718|ENST00000361462|TOGARAM1	ENSG00000198718|ENST00000361462|TOGARAM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	421.69842529296875	2	421.266345	840.518136	-0.7524	-0.00031696	0.518	0.00021822	-0.2344	-9.8745E-05	421.2664198333249	44.146	0.35478	44.146	43.995	44.35	0					12	7	2	0	0	0	0.028476	1	2965	2965		25.45	17.76	1	195570			14051	8854	11424	11440	15493	15493					0.09149812342559471
GKGKVFVLTN	10	Unmodified	_GKGKVFVLTN_					0	0	0			REV__tr|A0A7D6VPW8|A0A7D6VPW8_9CLOTCellshape-determiningproteinMreBOS=ClostridiumintestinaleOX=36845GN=mreBPE=3SV=1	REV__tr|A0A7D6VPW8|A0A7D6VPW8_9CLOTCellshape-determiningproteinMreBOS=ClostridiumintestinaleOX=36845GN=mreBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	531.81640625	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.70152	4	13940	13774;13845;13940;14034		30.318	7.9877	1	166960	+		14052	31284	11425	11441	15494;15495;15496;15497	15496					0.09498308748334239
GKGKVFVLTN	10	Unmodified	_GKGKVFVLTN_					0	0	0			REV__tr|A0A7D6VPW8|A0A7D6VPW8_9CLOTCellshape-determiningproteinMreBOS=ClostridiumintestinaleOX=36845GN=mreBPE=3SV=1	REV__tr|A0A7D6VPW8|A0A7D6VPW8_9CLOTCellshape-determiningproteinMreBOS=ClostridiumintestinaleOX=36845GN=mreBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8165893554688	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.64697	2	11459	11382;11459		36.447	9.7538	1	178650	+		14053	31284	11425	11441	15498;15499	15499					0.09498308748334239
GKGKVGRPT	9	Unmodified	_GKGKVGRPT_					0	0	0		nc|ENSG00000069275|Q9H1E3-2|NUCKS1;ENSG00000069275|ENST00000367142|NUCKS1	nc|ENSG00000069275|Q9H1E3-2|NUCKS1	nc|ENSG00000069275|Q9H1E3-2|NUCKS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.274169921875	2	450.274701	898.534849	-1.3926	-0.00062703	1.3713	0.00061744	-0.0213	-9.5907E-06	450.2752805302911	148.27	1.3965	146.84	146.48	147.87	-1.435					87	28	5	0	0	0	0.62352	1	14663	14663		29.15	9.7896	1	541000			14054	1406	11426	11442	15500	15500					0.08152313228526964
GKGKWYKF	8	Unmodified	_GKGKWYKF_					0	0	0		ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7842712402344	2	507.281995	1012.54944	-1.0865	-0.00055118	-2.5874	-0.0013125	-3.6739	-0.0018637	507.28021551248446	81.647	2.239	78.95	78.164	80.403	-2.6965					140	45	5	0	0	0	0.71369	1	6745	6745		40.573	1.3198	1	2095800			14055	6177	11427	11443	15501	15501					0.04366385376647486
GKGNKRGINL	10	Unmodified	_GKGNKRGINL_					0	0	0			REV__tr|A0A7D6W3I1|A0A7D6W3I1_9CLOTTerminaselargesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_10165PE=4SV=1	REV__tr|A0A7D6W3I1|A0A7D6W3I1_9CLOTTerminaselargesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_10165PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7889404296875	2	528.817264	1055.61998	1.7373	0.00091873	3.6274	0.0019183	5.3648	0.002837	528.8187658957485	136.18	0.70691	136.18	135.83	136.54	0					22	14	2	0	0	0	0.026849	1	15861	15861		19.104	12.791	1	115410	+		14056	31916	11428	11444	15502	15502					0.09439058694306368
GKGPGAEREV	10	Unmodified	_GKGPGAEREV_					0	0	0		ENST00000373162.5_1_1:36614728-36615013:-|nuORF	ENST00000373162.5_1_1:36614728-36615013:-|nuORF	ENST00000373162.5_1_1:36614728-36615013:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.2891845703125	2	500.26453	998.514508	-0.57526	-0.00028778	-3.3365	-0.0016691	-3.9118	-0.0019569	500.76475015815765	58.602	0.55058	55.21	54.952	55.502	-3.392					14	10	2	0	0	0	0.027028	1	3851	3851		12.812	0.60486	1	20799			14057	11001	11429	11445	15503	15503					0.015190977780434878
GKGPKLRNE	9	Unmodified	_GKGPKLRNE_					0	0	0			REV__AluSq2_dup18061|chr5:139546037-139546340:-|1.4465469777321287|0.1342600248197837|3.43|411.0|6|2|sense	REV__AluSq2_dup18061|chr5:139546037-139546340:-|1.4465469777321287|0.1342600248197837|3.43|411.0|6|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.2768859863281	2	499.790715	997.566878	-0.78549	-0.00039258	0.30379	0.00015183	-0.4817	-0.00024075	499.7907299186376	42.232	0.94339	42.232	41.853	42.796	0					33	21	3	0	0	0	0.027462	1	2713	2713		35.618	4.0394	1	389080	+		14058	15606	11430	11446	15504	15504					0.06799680911660744
GKGQGSKVI	9	Unmodified	_GKGQGSKVI_					0	0	0		nc|ENSG00000167525|Q8NCQ7-2|PROCA1;nc|ENSG00000167525|Q8NCQ7-3|PROCA1;nc|ENSG00000167525|Q8NCQ7|PROCA1;ENSG00000167525|ENST00000682792|PROCA1	nc|ENSG00000167525|Q8NCQ7-2|PROCA1	nc|ENSG00000167525|Q8NCQ7-2|PROCA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	437.2602233886719	2	437.261259	872.507966	-0.31236	-0.00013658	0.3788	0.00016563	0.066436	2.905E-05	437.2612386254915	40.229	1.2919	37.275	36.913	38.205	-2.9541					52	24	3	0	0	0	0.46356	1	1713	1713		45.972	1.8554	1	229740			14059	6797	11431	11447	15505	15505					0.06661204617319072
GKGQGSKVI	9	Unmodified	_GKGQGSKVI_					0	0	0		nc|ENSG00000167525|Q8NCQ7-2|PROCA1;nc|ENSG00000167525|Q8NCQ7-3|PROCA1;nc|ENSG00000167525|Q8NCQ7|PROCA1;ENSG00000167525|ENST00000682792|PROCA1	nc|ENSG00000167525|Q8NCQ7-2|PROCA1	nc|ENSG00000167525|Q8NCQ7-2|PROCA1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	437.261259	872.507966	0.2927	0.00012799	-0.4181	-0.00018282	-0.1254	-5.4833E-05	437.2609658197092	39.901	0.69678	37.191	36.854	37.551	-2.7097	-0.041882	-0.0004008	NaN	45.972	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59074			14060	6797	11431	11447							0.06661204617319072
GKGQPRLT	8	Unmodified	_GKGQPRLT_					0	0	0			REV__nc|ENSG00000100258|Q9BU23-3|LMF2	REV__nc|ENSG00000100258|Q9BU23-3|LMF2	MULTI-MSMS	OvCa9_classI_Rep2	2	428.7535705566406	2	428.753601	855.49265	0.67073	0.00028758	-0.63473	-0.00027214	0.035993	1.5432E-05	428.75322387886706	29.894	0.92809	27.185	26.975	27.903	-2.7097					35	18	3	0	0	0	0.7549	1	772	772		24.203	1.1603	1	70526	+		14061	17388	11432	11448	15506	15506					0.05912337820132052
GKGRQTIIQ	9	Unmodified	_GKGRQTIIQ_					0	0	0		ENSG00000123384|ENST00000243077|LRP1;LRP1|p.D1283Ifs*50|1|0.18|ENSG00000123384|chr12:57175962-57175962|G/-|frameshift_variant;LRP1|p.L1382Wfs*37|1|0.09|ENSG00000123384|chr12:57177192-57177192|G/-|frameshift_variant	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.2890625	2	500.79854	999.582528	-0.42993	-0.00021531	-1.4524	-0.00072734	-1.8823	-0.00094265	500.7972657947846	43.271	1.1099	43.271	42.97	44.08	0					34	12	4	0	0	0	0.027461	1	2808	2808		25.574	3.6142	1	1419700			14062	3592	11433	11449	15507	15507					0.08271967428709104
GKGRRLRA	8	Unmodified	_GKGRRLRA_					0	0	0			REV__ENST00000395091.2_1_16:30569644-30569812:-|nuORF	REV__ENST00000395091.2_1_16:30569644-30569812:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.28314208984375	2	457.293759	912.572966	-1.3064	-0.00059743	3.6172	0.0016541	2.3107	0.0010567	457.2947716878326	64	0.43945	64	63.814	64.253	0					14	10	2	0	0	0	0.028476	1	5796	5796		24.203	5.8783	1	103120	+		14063	25307	11434	11450	15508	15508					0.11318243933828853
GKGSSSMLPK	10	Unmodified	_GKGSSSMLPK_					0	0	0			REV__tr|A0A553SMQ8|A0A553SMQ8_NIACIFormate-dependentphosphoribosylglycinamideformyltransferaseOS=NialliacirculansOX=1397GN=purTPE=3SV=1	REV__tr|A0A553SMQ8|A0A553SMQ8_NIACIFormate-dependentphosphoribosylglycinamideformyltransferaseOS=NialliacirculansOX=1397GN=purTPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.2673034667969	2	496.265684	990.516816	-0.28434	-0.00014111	-1.0394	-0.00051582	-1.3238	-0.00065693	496.26504198889864	56.139	0.70787	52.845	52.412	53.12	-3.2944					25	13	2	0	0	0	0.5675	1	3578	3578		45.972	4.5456	1	1078400	+		14064	30363	11435	11451	15509	15509					0.021178101915097614
GKGVFVTKGLV	11	Unmodified	_GKGVFVTKGLV_					0	0	0		ENSG00000155542|ENST00000285947|SETD9;nc|ENSG00000155542|Q8NE22-2|SETD9;ENST00000475908.5_1_5:56205193-56212726:+|nuORF	ENSG00000155542|ENST00000285947|SETD9	ENSG00000155542|ENST00000285947|SETD9	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.8109741210938	2	552.842416	1103.67028	2.059	0.0011383	-0.712	-0.00039362	1.347	0.0007447	552.8418902657332	96.863	1.2361	96.863	96.418	97.654	0					43	28	2	0	0	0	0.025814	1	10576	10576		15.333	0	1	553330			14065	5789	11436	11452	15510	15510					0.12259168299465273
GKGVKRRL	8	Unmodified	_GKGVKRRL_					0	0	0			REV__ENST00000480791.1_1_3:58520620-58520914:-|nuORF	REV__ENST00000480791.1_1_3:58520620-58520914:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.78021240234375	2	457.306336	912.598118	-0.66606	-0.00030459	-2.2327	-0.001021	-2.8987	-0.0013256	457.3045416295325	80.593	0.2894	77.882	77.762	78.052	-2.7106					7	5	2	0	0	0	0.028476	1	6589	6589		8.2313	0	1	27875	+		14066	26467	11437	11453	15511	15511					0.138322987364063
GKGVPSIIDML	11	Unmodified	_GKGVPSIIDML_					0	0	0			REV__tr|A0A7D6VNU9|A0A7D6VNU9_9CLOTTranscriptionterminationfactorRhoOS=ClostridiumintestinaleOX=36845GN=rhoPE=3SV=1	REV__tr|A0A7D6VNU9|A0A7D6VNU9_9CLOTTranscriptionterminationfactorRhoOS=ClostridiumintestinaleOX=36845GN=rhoPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.3213500976562	2	565.317917	1128.62128	0.91166	0.00051538	1.7206	0.0009727	2.6323	0.0014881	565.3187717498485	62.062	1.6451	58.604	58.336	59.981	-3.4577					104	33	4	0	0	0	0.68757	1	4319	4319		33.922	1.1092	1	975150	+		14067	31207	11438	11454	15512	15512					0.06211511948208681
GKGYLRMN	8	Unmodified	_GKGYLRMN_					0	0	0		tr|A0A553SHY8|A0A553SHY8_NIACIcysteine-S-conjugatebeta-lyaseOS=NialliacirculansOX=1397GN=CEQ21_13895PE=3SV=1	tr|A0A553SHY8|A0A553SHY8_NIACIcysteine-S-conjugatebeta-lyaseOS=NialliacirculansOX=1397GN=CEQ21_13895PE=3SV=1	tr|A0A553SHY8|A0A553SHY8_NIACIcysteine-S-conjugatebeta-lyaseOS=NialliacirculansOX=1397GN=CEQ21_13895PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	469.7483825683594	2	469.747462	937.480371	1.739	0.0008169	-0.62413	-0.00029319	1.1149	0.00052371	469.7469695092561	129.99	0.56989	129.99	129.72	130.29	0					21	11	2	0	0	0	0.73626	1	15078	15078		33.516	1.5607	1	146050			14068	33327	11439	11455	15513	15513					0.00912978085443683
GKIDAKVHS	9	Unmodified	_GKIDAKVHS_					0	0	0		FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant;FLNB|p.S2513Rfs*5|1|0.04|ENSG00000136068|chr3:58169710-58169711|-/GATTC|frameshift_variant;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF;ENST00000475487.1_1_3:58141790-58149086:+|nuORF	FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant	FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	476.776123046875	2	477.771991	953.529429	1.4388	0.00068744	2.8241	0.0013493	4.263	0.0020367	477.7731666176187	113.54	0.67404	112.47	112.2	112.87	-1.0753					26	12	3	0	0	0	0.027455	1	8393	8393		34.173	13.226	1	54082			14069	4455	11440	11456	15514	15514					0.0508058964603606
GKIDAKVHS	9	Unmodified	_GKIDAKVHS_					0	0	0		FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant;FLNB|p.S2513Rfs*5|1|0.04|ENSG00000136068|chr3:58169710-58169711|-/GATTC|frameshift_variant;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF;ENST00000475487.1_1_3:58141790-58149086:+|nuORF	FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant	FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.7764587402344	2	477.771991	953.529429	0.85222	0.00040717	3.6932	0.0017645	4.5455	0.0021717	477.7738369904711	113.85	1.0607	112.41	112.2	113.26	-1.4461					35	20	2	0	0	0	0.027455	1	10610	10610		42.396	1.618	1	70900			14070	4455	11440	11456	15515	15515					0.0508058964603606
GKIERQEV	8	Unmodified	_GKIERQEV_					0	0	0			REV__nc|ENSG00000006576|Q8N3S3-7|PHTF2	REV__nc|ENSG00000006576|Q8N3S3-7|PHTF2	MULTI-MSMS	OvCa99_classI_Rep5	1	479.7711486816406	2	479.769448	957.524344	-0.44511	-0.00021355	0.3484	0.00016715	-0.096714	-4.64E-05	479.7695063523144	61.396	1.0968	61.396	60.772	61.869	0					47	25	4	0	0	0	0.57734	1	5431	5431		68.787	4.5796	1	5722100	+		14071	28702	11441	11457	15516	15516					0.04388285783431911
GKIFKHFKG	9	Unmodified	_GKIFKHFKG_					0	0	0		tr|A0A7D6VW19|A0A7D6VW19_9CLOTDUF1653domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07460PE=4SV=1	tr|A0A7D6VW19|A0A7D6VW19_9CLOTDUF1653domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07460PE=4SV=1	tr|A0A7D6VW19|A0A7D6VW19_9CLOTDUF1653domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07460PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.7844848632812	2	531.316369	1060.61818	-1.6542	-0.00087891	1.5267	0.00081117	-0.12748	-6.7735E-05	531.3161085942679	70.645	1.3607	67.164	66.589	67.95	-3.4812					33	27	2	0	0	0	0.027462	1	5309	5309		23.042	0	1	56888			14072	35242	11442	11458	15517	15517					0.09030049676357521
GKIIDTPIHL	10	Unmodified	_GKIIDTPIHL_					0	0	0		tr|A0A7D6ZVY5|A0A7D6ZVY5_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15695PE=4SV=1	tr|A0A7D6ZVY5|A0A7D6ZVY5_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15695PE=4SV=1	tr|A0A7D6ZVY5|A0A7D6ZVY5_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15695PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.830810546875	2	553.832049	1105.64954	0.13277	7.3535E-05	-3.4573	-0.0019148	-3.3245	-0.0018412	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.62668	1	13966	13966		38.806	4.6336	1	400120			14073	35820	11443	11459	15518	15518					0.10094577919812764
GKIKGWVLD	9	Unmodified	_GKIKGWVLD_					0	0	0			REV__ENSG00000088305|ENST00000328111|DNMT3B	REV__ENSG00000088305|ENST00000328111|DNMT3B	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.2803955078125	2	508.300384	1014.58622	-0.81696	-0.00041526	-0.60347	-0.00030674	-1.4204	-0.00072201	508.2986048474978	76.836	0.72842	75.047	74.635	75.364	-1.7894					20	13	2	0	0	0	0.027462	1	6373	6373		30.504	5.9844	1	11871	+		14074	17176	11444	11460	15519	15519					0.07950637202554844
GKIKWMKDMWR	11	Unmodified	_GKIKWMKDMWR_					0	0	0		ENSG00000152127|ENST00000281923|MGAT5	ENSG00000152127|ENST00000281923|MGAT5	ENSG00000152127|ENST00000281923|MGAT5	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3243713378906	3	493.59682	1477.76863	-0.36054	-0.00017796	-3.2453	-0.0016019	-3.6059	-0.0017798	493.5961004485574	78.925	0.2907	76.586	76.367	76.657	-2.3399					6	5	2	0	0	0	0.026068	1	4229	4229		21.78	3.9473	1	12364			14075	5605	11445	11461	15520	15520					0.04885705281344599
GKIMNTEKQK	10	Unmodified	_GKIMNTEKQK_					0	0	0		tr|A0A7D7A5B5|A0A7D7A5B5_9CLOTDNAtopoisomerase(ATP-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=HZF06_05260PE=4SV=1	tr|A0A7D7A5B5|A0A7D7A5B5_9CLOTDNAtopoisomerase(ATP-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=HZF06_05260PE=4SV=1	tr|A0A7D7A5B5|A0A7D7A5B5_9CLOTDNAtopoisomerase(ATP-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=HZF06_05260PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.3494262695312	2	588.823898	1175.63324	2.12	0.0012483	1.1538	0.00067937	3.2737	0.0019277	588.8238464085671	95.256	0.25182	95.256	95.119	95.37	0					10	5	3	0	0	0	0.026891	1	10405	10405		47.657	15.702	1	240100			14076	36164	11446	11462	15521	15521					0.052451286913765216
GKIQLPRPKM	10	Unmodified	_GKIQLPRPKM_					0	0	0		ENST00000530761.5_1_11:117857521-117870353:+|nuORF;ENSG00000110324|ENST00000227752|IL10RA	ENST00000530761.5_1_11:117857521-117870353:+|nuORF	ENST00000530761.5_1_11:117857521-117870353:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3558959960938	2	584.355168	1166.69578	-1.7162	-0.0010029	3.9032	0.0022809	2.187	0.001278	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.71192	1	14293	14293		29.15	4.6304	1	833330			14077	2768	11447	11463	15522	15522					0.1191031955024755
GKIVPKSLLL	10	Unmodified	_GKIVPKSLLL_					0	0	0		ENSG00000166851|ENST00000300093|PLK1;ENST00000518921.1_1_8:63056787-63057258:-|nuORF	ENSG00000166851|ENST00000300093|PLK1;ENST00000518921.1_1_8:63056787-63057258:-|nuORF	ENST00000518921.1_1_8:63056787-63057258:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.2866821289062	2	534.362985	1066.71142	0.26152	0.00013975	-3.0522	-0.001631	-2.7906	-0.0014912	534.3610565425964	57.872	0.37622	57.872	57.65	58.027	0					13	8	2	0	0	0	0.027343	1	4902	4902		19.104	8.238	1	168930			14078	6723;13076	11448	11464	15523	15523					0.18072929338950416
GKIVQGTGL	9	Unmodified	_GKIVQGTGL_					0	0	0			REV__ENST00000541388.1_1_11:64008551-64010784:+|nuORF	REV__ENST00000541388.1_1_11:64008551-64010784:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	436.764892578125	2	436.763635	871.512717	0.36594	0.00015983	-0.14638	-6.3933E-05	0.21956	9.5895E-05	436.763429856414	54.611	0.93499	54.611	54.172	55.107	0					40	21	3	0	0	0	0.055627	1	4409	4409		115.49	3.0831	1	2547700	+		14079	21778	11449	11465	15524	15524					0.071820887600893
GKIVQGTGL	9	Unmodified	_GKIVQGTGL_					0	0	0			REV__ENST00000541388.1_1_11:64008551-64010784:+|nuORF	REV__ENST00000541388.1_1_11:64008551-64010784:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	436.763635	871.512717	0.36594	0.00015983	-0.14638	-6.3933E-05	0.21956	9.5895E-05	436.763429856414	54.611	0.93499	54.611	54.172	55.107	0	0	0	NaN	115.49	40	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2547700	+		14080	21778	11449	11465							0.071820887600893
GKKCVYPLNY	10	Unmodified	_GKKCVYPLNY_					0	0	0			REV__ENST00000585410.1_1_19:19351440-19359696:+|nuORF	REV__ENST00000585410.1_1_19:19351440-19359696:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	591.8305053710938	2	592.810259	1183.60597	1.8932	0.0011223	1.5741	0.00093312	3.4673	0.0020555	592.8113581262477	103.04	0.58667	103.04	102.68	103.26	0					28	13	3	0	0	0	0.026688	1	11530	11530		58.782	16.386	1	441900	+		14081	18935	11450	11466	15525	15525					0.021506451510049374
GKKERLRH	8	Unmodified	_GKKERLRH_					0	0	0			REV__HERVH-int_dup2924|chr7:120779458-120782483:-|3.6914275035513295|0.0201601709888603|7.52|415.0|99|1|anti-sense	REV__HERVH-int_dup2924|chr7:120779458-120782483:-|3.6914275035513295|0.0201601709888603|7.52|415.0|99|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.3117065429688	2	512.312149	1022.60975	0.7933	0.00040642	-0.96823	-0.00049603	-0.17493	-8.962E-05	512.3115033647524	35.959	0.94899	33.11	32.79	33.739	-2.849					50	18	4	0	0	0	0.74229	1	1222	1222		30.504	3.8107	1	358410	+		14082	28226	11451	11467	15526	15526					0.09934495759739548
GKKFVIIV	8	Unmodified	_GKKFVIIV_					0	0	0		tr|A0A7D6ZWA8|A0A7D6ZWA8_9CLOTChemotaxisproteinCheAOS=ClostridiumintestinaleOX=36845GN=HZF06_17060PE=4SV=1	tr|A0A7D6ZWA8|A0A7D6ZWA8_9CLOTChemotaxisproteinCheAOS=ClostridiumintestinaleOX=36845GN=HZF06_17060PE=4SV=1	tr|A0A7D6ZWA8|A0A7D6ZWA8_9CLOTChemotaxisproteinCheAOS=ClostridiumintestinaleOX=36845GN=HZF06_17060PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	452.3059387207031	2	452.304939	902.595324	1.7491	0.00079111	0.26588	0.00012026	2.0149	0.00091137	452.3048953268154	74.712	0.6459	74.712	74.441	75.087	0					33	15	3	0	0	0	0.60486	1	7400	7400		62.978	5.1671	1	1175800			14083	35834	11452	11468	15527	15527					0.14013030558885475
GKKGACLRA	9	Unmodified	_GKKGACLRA_					0	0	0			REV__ENSG00000174721|ENST00000311575|FGFBP3	REV__ENSG00000174721|ENST00000311575|FGFBP3	MULTI-MSMS	OvCa99_classI_Rep5	1	452.2646484375	2	452.263279	902.512005	1.0415	0.00047105	1.0544	0.00047687	2.0959	0.00094792	452.26357113251356	74.387	1.2335	74.387	74.135	75.369	0					57	30	3	0	0	0	0.50149	1	7381	7381		42.396	7.1954	1	3412500	+		14084	21849	11453	11469	15528	15528					0.0568497083938837
GKKGGNDF	8	Unmodified	_GKKGGNDF_					0	0	0		ENST00000367249.8_1_1:202931099-202931243:-|nuORF	ENST00000367249.8_1_1:202931099-202931243:-|nuORF	ENST00000367249.8_1_1:202931099-202931243:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	411.7088623046875	2	411.70886	821.403166	0.25687	0.00010576	-0.079451	-3.2711E-05	0.17742	7.3045E-05	411.708697919157	25.967	1.4478	25.967	25.743	27.191	0					43	28	4	0	0	0	0.66704	1	649	649		50.025	7.5501	1	500850			14085	10840	11454	11470	15529	15529					-0.01467916859246543
GKKGKKAAVG	10	Unmodified	_GKKGKKAAVG_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000422486.1_1_3:185135285-185135612:-|nuORF;ENST00000567229.5_1_15:66791747-66793486:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.2274475097656	2	472.306001	942.597449	0.18668	8.8168E-05	-0.97845	-0.00046213	-0.79177	-0.00037396	472.3053587710219	31.405	0.19804	31.405	31.311	31.509	0					5	3	2	0	0	0	0.02725	1	1280	1280		10.265	2.575	1	14384			14086	7465	11455	11471	15530	15530					0.1238545929669499
GKKILAFPRE	10	Unmodified	_GKKILAFPRE_					0	0	0			REV__tr|A0A7D6VM55|A0A7D6VM55_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13980PE=4SV=1	REV__tr|A0A7D6VM55|A0A7D6VM55_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13980PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	579.8511962890625	2	579.853316	1157.69208	-0.78358	-0.00045436	-3.2985	-0.0019127	-4.0821	-0.002367	579.8513075539596	29.411	0.24837	29.411	29.288	29.536	0					8	4	2	0	0	0	0.75313	1	1050	1050		24.519	0	1	65080	+		14087	31125	11456	11472	15531	15531					0.11953973048002808
GKKKCWIP	8	Unmodified	_GKKKCWIP_					0	0	0		ENSG00000144821|ENST00000693548|MYH15;MYH15|p.A228Gfs*20|1|0.08|ENSG00000144821|chr3:108495868-108495869|-/C|frameshift_variant	ENSG00000144821|ENST00000693548|MYH15	ENSG00000144821|ENST00000693548|MYH15	MULTI-SECPEP	OvCa9_classI_Rep2	2	480.2919921875	2	480.278398	958.542243	1.548	0.00074348	-0.32282	-0.00015504	1.2252	0.00058844	480.2780970245661	90.15	1.4837	88.848	87.938	89.422	-1.302					45	29	2	0	0	0	0.028476	1	8017	8017		28.254	0	1	48087			14088	5183	11457	11473	15532	15532					0.06131329504557925
GKKLEIDI	8	Unmodified	_GKKLEIDI_					0	0	0			REV__tr|A0A553SGF4|A0A553SGF4_NIACIGlycineoxidaseThiOOS=NialliacirculansOX=1397GN=thiOPE=4SV=1	REV__tr|A0A553SGF4|A0A553SGF4_NIACIGlycineoxidaseThiOOS=NialliacirculansOX=1397GN=thiOPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.7322082519531	2	458.279118	914.543683	0.066379	3.042E-05	-0.022898	-1.0494E-05	0.043481	1.9926E-05	458.2789198135407	46.807	0.74914	46.807	46.587	47.336	0					27	16	2	0	0	0	0.028476	1	3356	3356		21.96	11.695	1	241720	+		14089	29692	11458	11474	15533	15533					0.08299242074338053
GKKPSITAVV	10	Unmodified	_GKKPSITAVV_					0	0	0		AGO1|p.F742Lfs*2|1|0.08|ENSG00000092847|chr1:35918381-35918382|-/C|frameshift_variant;ENSG00000092847|ENST00000373204|AGO1	AGO1|p.F742Lfs*2|1|0.08|ENSG00000092847|chr1:35918381-35918382|-/C|frameshift_variant	AGO1|p.F742Lfs*2|1|0.08|ENSG00000092847|chr1:35918381-35918382|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	500.3136291503906	2	500.313492	998.612431	0.59332	0.00029685	-0.99705	-0.00049884	-0.40373	-0.00020199	500.3129079797688	127.44	1.7293	127.21	126.84	128.57	-0.2359					109	34	4	0	0	0	0.6349	1	12577	12577		37.812	0	1	1360100			14090	49	11459	11475	15534	15534					0.11306906374022674
GKKTGVPNRA	10	Unmodified	_GKKTGVPNRA_					0	0	0			REV__ENST00000532734.5_2_11:8772194-8788213:-|nuORF	REV__ENST00000532734.5_2_11:8772194-8788213:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.81396484375	2	514.30399	1026.59343	1.9984	0.0010278	-2.9777	-0.0015315	-0.97929	-0.00050365	514.3030045092859	97.009	0.55868	97.009	96.795	97.353	0					17	12	2	0	0	0	0.026734	1	10667	10667		31.53	0	1	152860	+		14091	27240	11460	11476	15535	15535					0.0811936980298924
GKKVKTIFAC	10	Unmodified	_GKKVKTIFAC_					0	0	0			REV__nc|ENSG00000176406|Q9UQ26-4|RIMS2	REV__nc|ENSG00000176406|Q9UQ26-4|RIMS2	MULTI-MSMS	OvCa99_classI_Rep5	1	547.8252563476562	2	547.823169	1093.63179	-0.37669	-0.00020636	4.0883	0.0022397	3.7116	0.0020333	547.8252612140489	23.22	0.6553	23.22	23.042	23.697	0					25	12	4	0	0	0	0.55359	1	302	302		47.657	8.8512	1	473750	+		14092	21950	11461	11477	15536	15536					0.08871539393317107
GKKYTLLSKLT	11	Unmodified	_GKKYTLLSKLT_					0	0	0		tr|A0A7D6ZTB4|A0A7D6ZTB4_9CLOTSite-specificintegraseOS=ClostridiumintestinaleOX=36845GN=HZF06_19370PE=3SV=1	tr|A0A7D6ZTB4|A0A7D6ZTB4_9CLOTSite-specificintegraseOS=ClostridiumintestinaleOX=36845GN=HZF06_19370PE=3SV=1	tr|A0A7D6ZTB4|A0A7D6ZTB4_9CLOTSite-specificintegraseOS=ClostridiumintestinaleOX=36845GN=HZF06_19370PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	626.390380859375	2	626.387188	1250.75982	0.37775	0.00023662	1.472	0.00092202	1.8497	0.0011586	626.3880960980439	164.17	2.6761	164.17	163.08	165.75	0					198	100	2	0	0	0	0.71191	1	19133	19133		25.574	1.0549	1	238040			14093	35751	11462	11478	15537	15537					0.14447378188174298
GKLELVIVNIN	11	Unmodified	_GKLELVIVNIN_					0	0	0			REV__ENSG00000109471|ENST00000226730|IL2	REV__ENSG00000109471|ENST00000226730|IL2	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3697509765625	2	606.371538	1210.72852	-0.26856	-0.00016285	-2.8049	-0.0017008	-3.0734	-0.0018636	606.369699493104	145.24	3.8933	143.8	141.64	145.53	-1.4357					226	74	4	0	0	0	0.72324	1	14101	14101		21.686	4.2177	1	336140	+		14094	17931	11463	11479	15538	15538					0.13158805154080255
GKLKYTAGLN	10	Unmodified	_GKLKYTAGLN_					0	0	0			REV__tr|A0A7D7A182|A0A7D7A182_9CLOTTetratricopeptiderepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14195PE=4SV=1	REV__tr|A0A7D7A182|A0A7D7A182_9CLOTTetratricopeptiderepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14195PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	532.784912109375	2	532.808574	1063.60259	-0.90803	-0.0004838	1.6297	0.00086833	0.72169	0.00038452	532.8081192936789	72.759	0.88516	70.359	69.854	70.74	-2.3999					28	16	3	0	0	0	0.026843	1	5921	5921		38.754	22.28	1	14886	+		14095	32478	11464	11480	15539	15539					0.07333718368658992
GKLNKPAI	8	Unmodified	_GKLNKPAI_					0	0	0			REV__tr|A0A553SF14|A0A553SF14_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_08080PE=4SV=1	REV__tr|A0A553SF14|A0A553SF14_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_08080PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	420.7698059082031	2	420.76872	839.522887	2.7872	0.0011728	-0.3128	-0.00013162	2.4744	0.0010412	420.76864063208365	94.669	0.89731	94.669	94.306	95.204	0					53	20	4	0	0	0	0.73626	1	10304	10304		33.516	0	1	1278700	+		14096	29526	11465	11481	15540	15540					0.09670696485306962
GKLPIQLQALS	11	Unmodified	_GKLPIQLQALS_					0	0	0		ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6	ENSG00000166888|ENST00000300134|STAT6	ENSG00000166888|ENST00000300134|STAT6	MULTI-MSMS	OvCa9_classI_Rep3	3	584.3568725585938	2	584.358431	1166.70231	-4.6254	-0.0027029	1.1397	0.00066599	-3.4857	-0.0020369	584.3589865391973	145.25	4.5766	144.28	142.9	147.48	-0.97299					233	91	4	0	0	0	0.71789	1	12237	12237		23.523	0.94304	1	156220			14097	6730	11466	11482	15541	15541					0.1256253598260173
GKLQLASFLH	10	Unmodified	_GKLQLASFLH_					0	0	0			REV__ENST00000262467.9_2_17:5487666-5487837:-|nuORF	REV__ENST00000262467.9_2_17:5487666-5487837:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.8345336914062	2	557.324391	1112.63423	-0.79356	-0.00044227	-3.6147	-0.0020145	-4.4082	-0.0024568	557.3222589296751	69.947	0.57497	69.947	69.672	70.246	0					40	13	5	0	0	0	0.026936	1	6724	6724		54.776	5.3348	1	695070	+		14098	23976	11467	11483	15542	15542					0.08241711122627748
GKLRIWDT	8	Unmodified	_GKLRIWDT_					0	0	0		ENSG00000071127|ENST00000499869|WDR1;SKAP1-WDR1|2|fusion	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	OvCa9_classI_Rep2	2	494.7793884277344	2	494.782359	987.550165	-1.4606	-0.00072267	-2.8036	-0.0013872	-4.2642	-0.0021098	494.7809030294151	34.799	0.39691	32.089	31.811	32.208	-2.7097					14	7	3	0	0	0	0.74971	1	1369	1369		26.796	1.222	1	81484			14099	1446	11468	11484	15543	15543					0.055891800256858915
GKLRQGSLL	9	Unmodified	_GKLRQGSLL_					0	0	0		ENSG00000166813|ENST00000394412|KIF7	ENSG00000166813|ENST00000394412|KIF7	ENSG00000166813|ENST00000394412|KIF7	MULTI-MSMS	OvCa9_classI_Rep3	3	486.3044738769531	2	486.303458	970.592364	0.86253	0.00041945	2.6071	0.0012679	3.4697	0.0016873	486.3047324036629	126.22	3.5173	125.15	124.71	128.23	-1.0715					158	68	5	0	0	0	0.46356	1	9874	9874		45.972	1.8554	1	3175900			14100	6715	11469	11485	15544	15544					0.10589155434104214
GKLSPHAFKTE	11	Unmodified	_GKLSPHAFKTE_					0	0	0		ENSG00000152291|ENST00000377386|TGOLN2;nc|ENSG00000152291|O43493-5|TGOLN2;nc|ENSG00000152291|O43493-3|TGOLN2;nc|ENSG00000152291|O43493-7|TGOLN2	ENSG00000152291|ENST00000377386|TGOLN2	ENSG00000152291|ENST00000377386|TGOLN2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	404.73846435546875	3	405.555784	1213.64552	1.4381	0.00058323	0.33958	0.00013772	1.7777	0.00072095	405.5564053554673	57.988	0.40652	54.644	54.342	54.748	-3.3449					12	7	2	0	0	0	0.025701	1	3779	3779		15.337	0.64381	1	10321			14101	5616	11470	11486	15545	15545					0.04724488426086282
GKLSPHAFKTE	11	Unmodified	_GKLSPHAFKTE_					0	0	0		ENSG00000152291|ENST00000377386|TGOLN2;nc|ENSG00000152291|O43493-5|TGOLN2;nc|ENSG00000152291|O43493-3|TGOLN2;nc|ENSG00000152291|O43493-7|TGOLN2	ENSG00000152291|ENST00000377386|TGOLN2	ENSG00000152291|ENST00000377386|TGOLN2	MULTI-MATCH	OvCa9_classI_Rep2	2		3	405.555784	1213.64552	0.64825	0.0002629	1.7875	0.00072494	2.4358	0.00098784	405.55626337464344	57.213	0.39773	54.421	54.129	54.526	-2.792	-0.11144	0.0011529	NaN	15.337	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5630.9			14102	5616	11470	11486							0.04724488426086282
GKMKPYFI	8	Unmodified	_GKMKPYFI_					0	0	0			REV__HEPHL1|p.A683Gfs*12|1|0.45|ENSG00000181333|chr11:94086157-94086164|CCACAACA/-|frameshift_variant	REV__HEPHL1|p.A683Gfs*12|1|0.45|ENSG00000181333|chr11:94086157-94086164|CCACAACA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	492.2724914550781	2	492.272781	982.531009	-0.79248	-0.00039012	0.15211	7.4878E-05	-0.64038	-0.00031524	492.27281781556945	38.402	2.3795	35.692	35.32	37.7	-2.7097					117	47	5	0	0	0	0.64377	1	1810	1810		54.765	1.4132	1	1550300	+		14103	22228	11471	11487	15546	15546					0.039045074104365085
GKNFLAVTL	9	Unmodified	_GKNFLAVTL_					0	0	0			REV__ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	REV__ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	481.2765197753906	2	481.78711	961.559667	0.16571	7.9835E-05	-0.64355	-0.00031005	-0.47784	-0.00023022	481.7866545844973	81.784	0.82975	80.136	79.818	80.648	-1.6485					27	15	2	0	0	0	0.027462	1	7008	7008		47.657	19.775	1	317100	+		14104	15573	11472	11488	15547	15547					0.07734948311224343
GKNFLAVTL	9	Unmodified	_GKNFLAVTL_					0	0	0			REV__ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	REV__ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	MULTI-MATCH	OvCa99_classI_Rep5	1		2	481.78711	961.559667	2.3999	0.0011563	-0.52342	-0.00025218	1.8765	0.00090407	481.78690176526345	80.185	0.24316	80.185	80.031	80.274	0	0.055696	-0.00041663	NaN	47.657	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152620	+		14105	15573	11472	11488							0.07734948311224343
GKNHKWKN	8	Unmodified	_GKNHKWKN_					0	0	0		ENSG00000083635|ENST00000379161|NUFIP1	ENSG00000083635|ENST00000379161|NUFIP1	ENSG00000083635|ENST00000379161|NUFIP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.3236083984375	2	506.277775	1010.541	-1.6056	-0.00081287	4.1089	0.0020803	2.5034	0.0012674	506.279655461567	106.89	0.73675	105.01	104.8	105.54	-1.8784					24	13	2	0	0	0	0.028476	1	9729	9729		33.516	8.0654	1	47758			14106	1696	11473	11489	15548	15548					0.03614831460026835
GKNILFLY	8	Unmodified	_GKNILFLY_					0	0	0			REV__tr|A0A7D6W3W5|A0A7D6W3W5_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11525PE=4SV=1	REV__tr|A0A7D6W3W5|A0A7D6W3W5_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11525PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	483.29296875	2	484.284203	966.553853	-0.81426	-0.00039433	0.98602	0.00047751	0.17176	8.3182E-05	484.2845768563296	94.715	1.004	92.819	92.561	93.565	-1.8956					46	19	4	0	0	0	0.028476	1	6136	6136		21.702	0	1	108590	+		14107	31925	11474	11490	15549	15549					0.06923849799545678
GKNILKDAVKD	11	Unmodified	_GKNILKDAVKD_					0	0	0			REV__tr|A0A7D6VND9|A0A7D6VND9_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14965PE=4SV=1	REV__tr|A0A7D6VND9|A0A7D6VND9_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14965PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	600.3245849609375	2	600.85097	1199.68739	1.2278	0.0007377	3.6476	0.0021917	4.8754	0.0029294	600.8541893558903	156.41	0.30377	156.41	156.24	156.55	0					7	5	2	0	0	0	0.025677	1	18337	18337		28.081	0.19925	1	12754	+		14108	31176	11475	11491	15550	15550					0.09553044114591103
GKNIVLYF	8	Unmodified	_GKNIVLYF_					0	0	0		tr|A0A553SG38|A0A553SG38_NIACIthioredoxin-dependentperoxiredoxinOS=NialliacirculansOX=1397GN=CEQ21_10145PE=3SV=1	tr|A0A553SG38|A0A553SG38_NIACIthioredoxin-dependentperoxiredoxinOS=NialliacirculansOX=1397GN=CEQ21_10145PE=3SV=1	tr|A0A553SG38|A0A553SG38_NIACIthioredoxin-dependentperoxiredoxinOS=NialliacirculansOX=1397GN=CEQ21_10145PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.29388427734375	2	477.276378	952.538203	-0.091573	-4.3706E-05	1.3688	0.00065329	1.2772	0.00060959	477.2766898713381	73.117	0.20073	73.117	72.954	73.155	0					7	4	2	0	0	0	0.028476	1	7151	7151		26.796	0	1	75558			14109	33114	11476	11492	15551	15551					0.060035632825247376
GKNPPPVLL	9	Unmodified	_GKNPPPVLL_					0	0	0		ENST00000603865.1_1_11:75507249-75507624:+|nuORF	ENST00000603865.1_1_11:75507249-75507624:+|nuORF	ENST00000603865.1_1_11:75507249-75507624:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.7890625	2	467.789653	933.564752	0.83084	0.00038866	-1.1924	-0.00055778	-0.36153	-0.00016912	467.78901113954316	114	1.1829	112.55	112.34	113.52	-1.4461					42	22	3	0	0	0	0.58665	1	10584	10584		33.516	3.0119	1	136330			14110	14258	11477	11493	15552	15552					0.09531252173849225
GKNWSKKRLIT	11	Unmodified	_GKNWSKKRLIT_					0	0	0		ENST00000515421.1_2_3:133293598-133293958:+|nuORF;ENST00000507408.5_2_3:133293578-133293958:+|nuORF	ENST00000515421.1_2_3:133293598-133293958:+|nuORF	ENST00000515421.1_2_3:133293598-133293958:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	444.2704162597656	3	444.269978	1329.7881	0.66341	0.00029474	-0.85654	-0.00038054	-0.19313	-8.5801E-05	444.2695760275752	70.917	1.4989	68.197	67.905	69.404	-2.7196					93	29	5	0	0	0	0.63942	1	3290	3290		41.08	12.503	1	769250			14111	12928	11478	11494	15553	15553					0.13640120888135243
GKNWSKKRLIT	11	Unmodified	_GKNWSKKRLIT_					0	0	0		ENST00000515421.1_2_3:133293598-133293958:+|nuORF;ENST00000507408.5_2_3:133293578-133293958:+|nuORF	ENST00000515421.1_2_3:133293598-133293958:+|nuORF	ENST00000515421.1_2_3:133293598-133293958:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	444.269978	1329.7881	2.1339	0.00094804	-2.7884	-0.0012388	-0.65442	-0.00029074	444.26867644612025	70.711	1.4515	68.14	67.866	69.317	-2.5707	-0.1017	-0.0021072	NaN	41.08	48	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	553930			14112	12928	11478	11494							0.13640120888135243
GKNWSKKRLIT	11	Unmodified	_GKNWSKKRLIT_					0	0	0		ENST00000515421.1_2_3:133293598-133293958:+|nuORF;ENST00000507408.5_2_3:133293578-133293958:+|nuORF	ENST00000515421.1_2_3:133293598-133293958:+|nuORF	ENST00000515421.1_2_3:133293598-133293958:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	444.269978	1329.7881	-1.0534	-0.00046798	0.31071	0.00013804	-0.74265	-0.00032994	444.26997864355485	71.844	1.2614	68.388	68.124	69.386	-3.4563	0.1461	0.0020233	NaN	41.08	43	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	639130			14113	12928	11478	11494							0.13640120888135243
GKPGTPGLL	9	Unmodified	_GKPGTPGLL_					0	0	0			REV__ENSG00000182447|ENST00000327928|OTOL1	REV__ENSG00000182447|ENST00000327928|OTOL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	420.25274658203125	2	420.252903	838.491253	0.28048	0.00011787	0.0022746	9.559E-07	0.28276	0.00011883	420.25282934845166	110.01	2.9881	108.41	108.07	111.06	-1.6011					122	56	5	0	0	0	0.27001	1	10097	10097		66.429	9.7082	1	621620	+		14114	22293	11479	11495	15554	15554					0.06554703731376321
GKPIKPKV	8	Unmodified	_GKPIKPKV_					0	0	0			REV__ENST00000480306.5_1_3:52027767-52028806:-|nuORF	REV__ENST00000480306.5_1_3:52027767-52028806:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	434.2527160644531	2	433.794738	865.574923	0.99449	0.00043141	-1.1369	-0.00049316	-0.14236	-6.1757E-05	433.79412757584646	63.267	0.31449	63.267	63.1	63.414	0					12	7	2	0	0	0	0.028476	1	5682	5682		18.324	16.705	1	187190	+		14115	20725	11480	11496	15555	15555					0.13675859899080933
GKPKECWEEL	10	Carbamidomethyl (C)	_GKPKEC(Carbamidomethyl (C))WEEL_	GKPKEC(1)WEEL		GKPKEC(50)WEEL		0	1	0		ENSG00000178033|ENST00000368599|CALHM5	ENSG00000178033|ENST00000368599|CALHM5	ENSG00000178033|ENST00000368599|CALHM5	MULTI-MSMS	OvCa99_classI_Rep5	1	638.3086547851562	2	638.305538	1274.59652	1.3529	0.00086358	3.2012	0.0020434	4.5542	0.0029069	638.3074098499627	131.5	0.84091	131.5	131.15	131.99	0					48	17	4	0	0	0	0.53807	1	15274	15274		49.536	11.725	1	1556500			14116	7729	11481	11497	15556	15556	72				-0.029791679251729875
GKPQQKWKKNR	11	Unmodified	_GKPQQKWKKNR_					0	0	0		ENST00000216160.10_1_22:39827477-39827837:+|nuORF	ENST00000216160.10_1_22:39827477-39827837:+|nuORF	ENST00000216160.10_1_22:39827477-39827837:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	466.6079406738281	3	466.608993	1396.80515	-6.6027	-0.0030809	4.3852	0.0020462	-2.2175	-0.0010347	466.61096806232865	159.04	3.2002	157.77	156.69	159.89	-1.267					192	69	4	0	0	0	0.72477	1	13716	13716		18.531	7.0764	1	106530			14117	9665	11482	11498	15557	15557					0.12262041493909237
GKPRAGVALA	10	Unmodified	_GKPRAGVALA_					0	0	0		nc|ENSG00000122778|Q9HCM3-2|KIAA1549;ENSG00000122778|ENST00000422774|KIAA1549;KIAA1549|p.G773Rfs*3|1|0.06|ENSG00000122778|chr7:138917309-138917310|-/G|frameshift_variant	nc|ENSG00000122778|Q9HCM3-2|KIAA1549	nc|ENSG00000122778|Q9HCM3-2|KIAA1549	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.2908020019531	2	470.290351	938.566149	0.052113	2.4508E-05	-0.67944	-0.00031953	-0.62733	-0.00029503	470.28999558575936	46.445	1.893	43.372	43.03	44.923	-3.0724					85	36	4	0	0	0	0.65434	1	2477	2477		35.618	0	1	1576300			14118	3557	11483	11499	15558	15558					0.094408862625869
GKPRRILGRN	10	Unmodified	_GKPRRILGRN_					0	0	0			REV__ENST00000396757.5_1_9:35615990-35616170:-|nuORF	REV__ENST00000396757.5_1_9:35615990-35616170:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8585815429688	2	583.86508	1165.71561	-6.9004	-0.0040289	-4.0278	-0.0023517	-10.928	-0.0063806	583.8626216517176	154.95	1.1831	153.88	153.56	154.74	-1.073					81	29	4	0	0	0	0.78463	1	13320	13320		20.947	1.8434	1	200380	+		14119	25336	11484	11500	15559	15559					0.13937831605244355
GKPSFNNQVLN	11	Unmodified	_GKPSFNNQVLN_					0	0	0			REV__ENSG00000171487|ENST00000390649|NLRP5	REV__ENSG00000171487|ENST00000390649|NLRP5	MULTI-SECPEP	OvCa99_classI_Rep5	1	406.56915283203125	3	406.547288	1216.62004	1.0825	0.00044009	-2.4952	-0.0010144	-1.4127	-0.00057432	406.5461774463935	58.643	0.48958	58.643	58.322	58.812	0					18	11	2	0	0	0	0.02525	1	4964	4964		41.109	21.482	1	258660	+		14120	21616	11485	11501	15560	15560					0.020390139036635446
GKPTQRVL	8	Unmodified	_GKPTQRVL_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-3|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	OvCa9_classI_Rep2	2	449.7790222167969	2	449.777077	897.5396	2.9918	0.0013456	1.4706	0.00066145	4.4624	0.0020071	449.77757313499694	111.64	1.1333	111.5	111.03	112.16	-0.13961					67	22	4	0	0	0	0.64026	1	10563	10563		55.504	0.73953	1	512060			14121	1087	11486	11502	15561	15561					0.08673197371274455
GKPVGPKGPM	10	Unmodified	_GKPVGPKGPM_					0	0	0		nc|ENSG00000205861|Q58A44|PCOTH	nc|ENSG00000205861|Q58A44|PCOTH	nc|ENSG00000205861|Q58A44|PCOTH	MULTI-SECPEP	OvCa9_classI_Rep3	3	483.2933654785156	2	484.273312	966.532072	-0.87828	-0.00042533	1.911	0.00092543	1.0327	0.0005001	484.2746835106051	95.302	0.99529	93.407	92.964	93.96	-1.8956					24	19	2	0	0	0	0.026915	1	6150	6150		44.117	23.635	1	20966			14122	15279	11487	11503	15562	15562					0.047467217793496275
GKQLAKQIIK	10	Unmodified	_GKQLAKQIIK_					0	0	0			REV__nc|ENSG00000162909|P17655-2|CAPN2	REV__nc|ENSG00000162909|P17655-2|CAPN2	MULTI-MSMS	OvCa9_classI_Rep3	3	563.8684692382812	2	563.868966	1125.72338	0.99268	0.00055974	-0.96547	-0.0005444	0.027204	1.5339E-05	563.8683220358956	64.897	0.86053	61.904	61.696	62.557	-2.9933					30	16	3	0	0	0	0.73378	1	2595	2595		26.693	1.1189	1	25366	+		14123	20791	11488	11504	15563	15563					0.16554546082124943
GKQLAKQIIK	10	Unmodified	_GKQLAKQIIK_					0	0	0			REV__nc|ENSG00000162909|P17655-2|CAPN2	REV__nc|ENSG00000162909|P17655-2|CAPN2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	563.868966	1125.72338	0.0027995	1.5786E-06	-0.43711	-0.00024647	-0.43431	-0.00024489	563.8685891456257	64.28	0.89581	61.555	61.337	62.233	-2.7245	-0.17455	0.00037017	NaN	26.693	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17790	+		14124	20791	11488	11504							0.16554546082124943
GKQLAKQIIK	10	Unmodified	_GKQLAKQIIK_					0	0	0			REV__nc|ENSG00000162909|P17655-2|CAPN2	REV__nc|ENSG00000162909|P17655-2|CAPN2	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	563.868966	1125.72338	0.99268	0.00055974	-0.96547	-0.0005444	0.027204	1.5339E-05	563.8683220358956	64.897	0.86053	61.904	61.696	62.557	-2.9933	0.17455	-0.00022569	NaN	26.693	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25366	+		14125	20791	11488	11504							0.16554546082124943
GKQVPYKK	8	Unmodified	_GKQVPYKK_					0	0	0		ENST00000497936.5_1_6:84884653-84936120:-|nuORF;nc|ENSG00000135315|Q5TB80-2|CEP162;ENSG00000135315|ENST00000403245|CEP162	ENST00000497936.5_1_6:84884653-84936120:-|nuORF	ENST00000497936.5_1_6:84884653-84936120:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.2884216308594	2	474.287277	946.560001	2.9498	0.001399	4.2892	0.0020343	7.239	0.0034334	474.28922077273074	129.53	5.9099	128.07	125.62	131.53	-1.4565					195	118	2	0	0	0	0.71369	1	12637	12637		40.573	10.731	1	37993			14126	4364	11489	11505	15564	15564					0.08458368031085683
GKREEGLVLM	10	Unmodified	_GKREEGLVLM_					0	0	0			REV__ENST00000440377.2_1_1:146645009-146645087:+|nuORF	REV__ENST00000440377.2_1_1:146645009-146645087:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.3648681640625	2	566.313166	1130.61178	1.1972	0.000678	-1.526	-0.00086418	-0.32875	-0.00018618	566.81390052056	105.71	0.30566	105.71	105.53	105.83	0					10	6	2	0	0	0	0.026734	1	11869	11869		47.657	5.2612	1	201550	+		14127	25834	11490	11506	15565	15565					0.05169743662668225
GKRHHRRV	8	Unmodified	_GKRHHRRV_					0	0	0			REV__tr|A0A553SSQ6|A0A553SSQ6_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03440PE=4SV=1	REV__tr|A0A553SSQ6|A0A553SSQ6_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03440PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.2572021484375	2	523.315558	1044.61656	-0.37133	-0.00019432	2.3798	0.0012454	2.0084	0.0010511	523.3162536731191	33.014	0.24385	33.014	32.892	33.136	0					5	4	2	0	0	0	0.028476	1	1484	1484		31.955	11.008	1	11061	+		14128	30865	11491	11507	15566	15566					0.0960385343098551
GKRKKKRA	8	Unmodified	_GKRKKKRA_					0	0	0		L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|151|3|sense	L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|151|3|sense	L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|151|3|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.3050842285156	2	486.332885	970.651216	0.56298	0.00027379	-3.8313	-0.0018633	-3.2683	-0.0015895	486.331038897537	124.92	0.39419	124.69	124.57	124.96	-0.2359					10	7	2	0	0	0	0.028476	1	12147	12147		3.9852	2.6576	1	8904.9			14129	14652	11492	11508	15567	15567					0.16471676519074663
GKRKKRKAY	9	Unmodified	_GKRKKRKAY_					0	0	0			REV__tr|A0A7D6VSZ9|A0A7D6VSZ9_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18680PE=4SV=1	REV__tr|A0A7D6VSZ9|A0A7D6VSZ9_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18680PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	567.8470458984375	2	567.864549	1133.71454	0.29286	0.00016631	-2.1734	-0.0012342	-1.8805	-0.0010679	567.8635351875655	71.496	0.15799	68.989	68.858	69.016	-2.5071					4	2	2	0	0	0	0.027462	1	5757	5757		23.042	0	1	10157	+		14130	31560	11493	11509	15568	15568					0.15303617236327227
GKRKKRKAY	9	Unmodified	_GKRKKRKAY_					0	0	0			REV__tr|A0A7D6VSZ9|A0A7D6VSZ9_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18680PE=4SV=1	REV__tr|A0A7D6VSZ9|A0A7D6VSZ9_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18680PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.8475341796875	2	567.864549	1133.71454	0.15171	8.6153E-05	1.3951	0.00079223	1.5468	0.00087838	567.8652058146129	71.659	0.3967	69.057	68.932	69.328	-2.6023					16	7	3	0	0	0	0.027462	1	3359	3359		11.511	0	1	48099	+		14131	31560	11493	11509	15569	15569					0.15303617236327227
GKRKKRRH	8	Unmodified	_GKRKKRRH_					0	0	0		nc|ENSG00000100987|Q9NZR4-5|VSX1;nc|ENSG00000100987|Q9NZR4-8|VSX1;ENSG00000100987|ENST00000376709|VSX1;nc|ENSG00000100987|Q9NZR4-6|VSX1;nc|ENSG00000100987|Q9NZR4-7|VSX1;nc|ENSG00000100987|Q9NZR4-2|VSX1;nc|ENSG00000100987|Q9NZR4-3|VSX1	nc|ENSG00000100987|Q9NZR4-5|VSX1	nc|ENSG00000100987|Q9NZR4-5|VSX1	MULTI-MSMS	OvCa9_classI_Rep2	2	533.3475952148438	2	533.346858	1064.67916	-0.6187	-0.00032998	2.4853	0.0013255	1.8666	0.00099556	533.348160054999	92.553	1.6565	91.385	91.024	92.68	-1.168					102	31	5	0	0	0	0.75661	1	8286	8286		19.36	0.25645	1	1110800			14132	2129	11494	11510	15570	15570					0.149409994991629
GKRMFPSLK	9	Unmodified	_GKRMFPSLK_					0	0	0			REV__ENSG00000109193|ENST00000226444|SULT1E1	REV__ENSG00000109193|ENST00000226444|SULT1E1	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.7991333007812	2	532.307687	1062.60082	1.1703	0.00062294	-0.36648	-0.00019508	0.8038	0.00042787	532.3074386124093	143.18	0.43338	143.18	142.88	143.32	0					12	8	2	0	0	0	0.027462	1	16703	16703		37.812	5.8567	1	39067	+		14133	17925	11495	11511	15571	15571					0.07202386079029566
GKRTKGGHKG	10	Unmodified	_GKRTKGGHKG_					0	0	0		ENST00000411753.1_1_3:31495669-31495876:+|nuORF	ENST00000411753.1_1_3:31495669-31495876:+|nuORF	ENST00000411753.1_1_3:31495669-31495876:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.3048706054688	2	513.301781	1024.58901	-1.2723	-0.00065308	3.0439	0.0015624	1.7716	0.00090936	513.3032837097945	120.22	1.4537	118.87	118.19	119.65	-1.3444					48	27	3	0	0	0	0.66944	1	11292	11292		33.922	4.7516	1	147240			14134	11544	11496	11512	15572	15572					0.07769905380087039
GKSHTFPE	8	Unmodified	_GKSHTFPE_					0	0	0		nc|ENSG00000116120|Q9NSD9-2|FARSB;ENSG00000116120|ENST00000281828|FARSB	nc|ENSG00000116120|Q9NSD9-2|FARSB	nc|ENSG00000116120|Q9NSD9-2|FARSB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	451.27874755859375	2	451.721967	901.429381	0.99099	0.00044765	-1.8172	-0.00082086	-0.82618	-0.0003732	451.72118948636773	112.68	0.89289	111.16	110.9	111.79	-1.5111					24	17	2	0	0	0	0.028476	1	10397	10397		12.207	0	1	29984			14135	3154	11497	11513	15573	15573					-0.025276476877706955
GKSILILQK	9	Unmodified	_GKSILILQK_					0	0	0		tr|A0A553SJZ5|A0A553SJZ5_NIACIsite-specificDNA-methyltransferase(adenine-specific)OS=NialliacirculansOX=1397GN=CEQ21_17720PE=4SV=1	tr|A0A553SJZ5|A0A553SJZ5_NIACIsite-specificDNA-methyltransferase(adenine-specific)OS=NialliacirculansOX=1397GN=CEQ21_17720PE=4SV=1	tr|A0A553SJZ5|A0A553SJZ5_NIACIsite-specificDNA-methyltransferase(adenine-specific)OS=NialliacirculansOX=1397GN=CEQ21_17720PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.5794982910156	2	500.331685	998.648816	-0.56368	-0.00028202	-0.14449	-7.2291E-05	-0.70816	-0.00035432	500.33147177877186	42.518	0.7281	42.518	42.242	42.97	0					26	16	3	0	0	0	0.027462	1	2790	2790		42.864	22.867	1	317970			14136	33559	11498	11514	15574	15574					0.1494378327074628
GKSKLIIGIA	10	Unmodified	_GKSKLIIGIA_					0	0	0		tr|A0A553SSN9|A0A553SSN9_NIACIL,D-TPasecatalyticdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03410PE=4SV=1	tr|A0A553SSN9|A0A553SSN9_NIACIL,D-TPasecatalyticdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03410PE=4SV=1	tr|A0A553SSN9|A0A553SSN9_NIACIL,D-TPasecatalyticdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03410PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.7898254394531	2	500.331685	998.648816	0.60553	0.00030297	-0.78338	-0.00039195	-0.17785	-8.8985E-05	500.3310623628908	37.044	1.0973	34.151	33.844	34.941	-2.8925					45	21	3	0	0	0	0.027228	1	1334	1334		10.866	0.6003	1	191230			14137	34396	11499	11515	15575	15575					0.1494378327074628
GKSSINEKMV	10	Unmodified	_GKSSINEKMV_					0	0	0			REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	546.8114624023438	2	546.789524	1091.56449	-0.43197	-0.0002362	-0.82773	-0.00045259	-1.2597	-0.00068879	546.7895538686831	77.364	0.41533	75.575	75.259	75.675	-1.7894					10	7	2	0	0	0	0.026493	1	6406	6406		64.207	23.429	1	28906	+		14138	19252	11500	11516	15576	15576					0.022374643916919013
GKSTLFRLGQ	10	Unmodified	_GKSTLFRLGQ_					0	0	0			REV__tr|A0A7D6VRS1|A0A7D6VRS1_9CLOTFeMocofactorbiosynthesisproteinNifBOS=ClostridiumintestinaleOX=36845GN=nifBPE=3SV=1	REV__tr|A0A7D6VRS1|A0A7D6VRS1_9CLOTFeMocofactorbiosynthesisproteinNifBOS=ClostridiumintestinaleOX=36845GN=nifBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	553.31689453125	2	553.819473	1105.62439	-1.512	-0.0008374	-2.8804	-0.0015952	-4.3924	-0.0024326	553.817811278223	84.729	0.49361	82.468	82.162	82.655	-2.261					23	9	3	0	0	0	0.026956	1	4933	4933		26.693	0	1	317530	+		14139	31440	11501	11517	15577	15577					0.07580523117235316
GKTFKLVQN	9	Unmodified	_GKTFKLVQN_					0	0	0			REV__ENSG00000166197|ENST00000605788|NOLC1	REV__ENSG00000166197|ENST00000605788|NOLC1	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.800537109375	2	517.803291	1033.59203	-1.2074	-0.0006252	2.02	0.0010459	0.81255	0.00042074	517.8042244888823	84.73	0.84823	83.183	82.848	83.696	-1.5462					26	16	2	0	0	0	0.027462	1	7353	7353		35.618	2.8059	1	15788	+		14140	21165	11502	11518	15578	15578					0.07657735714224145
GKTHLSIALAL	11	Unmodified	_GKTHLSIALAL_					0	0	0		tr|A0A7D6VRD3|A0A7D6VRD3_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06370PE=4SV=1	tr|A0A7D6VRD3|A0A7D6VRD3_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06370PE=4SV=1	tr|A0A7D6VRD3|A0A7D6VRD3_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06370PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	562.3433837890625	2	562.345323	1122.67609	-1.142	-0.00064221	-2.621	-0.0014739	-3.7631	-0.0021161	562.3438081477608	141.84	4.7959	141.62	140.24	145.03	-0.22697					133	96	2	0	0	0	0.72511	1	14427	14427		14.137	0.68308	1	113870			14141	34918	11503	11519	15579	15579					0.11966266811100468
GKTILLRLL	9	Unmodified	_GKTILLRLL_					0	0	0			REV__nc|ENSG00000196199|Q99549-2|MPHOSPH8	REV__nc|ENSG00000196199|Q99549-2|MPHOSPH8	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.8228149414062	2	513.855327	1025.6961	2.0865	0.0010721	-0.39103	-0.00020093	1.6955	0.00087122	513.8550815640276	86.971	0.45448	86.971	86.761	87.216	0					21	10	3	0	0	0	0.027462	1	9197	9197		27.882	3.6795	1	417860	+		14142	22798	11504	11520	15580	15580					0.18428062541738655
GKTKLQLD	8	Unmodified	_GKTKLQLD_					0	0	0			REV__ENSG00000196605|ENST00000397902|ZNF846	REV__ENSG00000196605|ENST00000397902|ZNF846	MULTI-SECPEP	OvCa9_classI_Rep4_	4	451.25421142578125	2	451.768917	901.523281	2.179	0.00098442	-2.4219	-0.0010942	-0.24291	-0.00010974	451.767610962246	67.761	0.48875	64.271	64.037	64.526	-3.4902					14	9	2	0	0	0	0.028476	1	5007	5007		24.519	0	1	20389	+		14143	22849	11505	11521	15581	15581					0.06858071414524147
GKTLYTQT	8	Unmodified	_GKTLYTQT_					0	0	0		tr|A0A553SF48|A0A553SF48_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_08245PE=4SV=1	tr|A0A553SF48|A0A553SF48_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_08245PE=4SV=1	tr|A0A553SF48|A0A553SF48_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_08245PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.78582763671875	2	456.245275	910.475997	0.31068	0.00014174	-1.6132	-0.00073602	-1.3025	-0.00059428	456.2439307372935	47.449	1.1626	44.341	44.03	45.192	-3.1077					39	22	3	0	0	0	0.028476	1	2590	2590		23.042	0	1	52007			14144	32990	11506	11522	15582	15582					0.017177921435177268
GKTQLVRAVAR	11	Unmodified	_GKTQLVRAVAR_					0	0	0		nc|ENSG00000171763|Q9BVQ7-3|AFG2B;nc|ENSG00000171763|Q9BVQ7-2|AFG2B;ENSG00000171763|ENST00000305560|SPATA5L1	nc|ENSG00000171763|Q9BVQ7-3|AFG2B	nc|ENSG00000171763|Q9BVQ7-3|AFG2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.23052978515625	3	400.250806	1197.73059	1.4696	0.0005882	0.8123	0.00032512	2.2819	0.00091332	400.25134340653847	31.004	0.14696	31.004	30.881	31.027	0					4	2	2	0	0	0	0.025772	1	1231	1231		26.75	11.417	1	18277			14145	7231	11507	11523	15583	15583					0.13963278682558666
GKVDQAERLL	10	Unmodified	_GKVDQAERLL_					0	0	0			REV__ENST00000478064.1_1_1:183097743-183097896:+|nuORF	REV__ENST00000478064.1_1_1:183097743-183097896:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.84228515625	2	564.822212	1127.62987	2.498	0.0014109	-3.7746	-0.002132	-1.2766	-0.00072103	565.32066774784	95.722	0.12946	95.722	95.656	95.785	0					4	2	2	0	0	0	0.027089	1	10457	10457		25.126	0	1	71740	+		14146	26402	11508	11524	15584	15584					0.07116201909047959
GKVESYVGIL	10	Unmodified	_GKVESYVGIL_					0	0	0			REV__tr|A0A7D6VPH6|A0A7D6VPH6_9CLOTPorphobilinogendeaminaseOS=ClostridiumintestinaleOX=36845GN=hemCPE=3SV=1	REV__tr|A0A7D6VPH6|A0A7D6VPH6_9CLOTPorphobilinogendeaminaseOS=ClostridiumintestinaleOX=36845GN=hemCPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.785400390625	2	532.802957	1063.59136	-1.5406	-0.00082082	-2.771	-0.0014764	-4.3116	-0.0022972	532.8017420076218	74.069	0.41934	70.838	70.628	71.047	-3.2308					12	8	2	0	0	0	0.026968	1	5761	5761		36.447	10.997	1	36505	+		14147	31248	11509	11525	15585	15585					0.062108962745242025
GKVKKFIM	8	Unmodified	_GKVKKFIM_					0	0	0			REV__ENST00000572148.1_1_17:4863453-4863890:-|nuORF	REV__ENST00000572148.1_1_17:4863453-4863890:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.8004150390625	2	475.796423	949.578294	0.022058	1.0495E-05	3.8429	0.0018284	3.8649	0.0018389	475.7981725614516	55.904	1.5182	52.61	52.16	53.679	-3.2944					77	29	4	0	0	0	0.75915	1	3554	3554		20.482	5.8177	1	951660	+		14148	27749	11510	11526	15586	15586					0.10148786681440924
GKVLEIGVI	9	Unmodified	_GKVLEIGVI_					0	0	0		tr|A0A553SGU0|A0A553SGU0_NIACIRNA-bindingtranscriptionalaccessoryproteinOS=NialliacirculansOX=1397GN=CEQ21_11540PE=4SV=1	tr|A0A553SGU0|A0A553SGU0_NIACIRNA-bindingtranscriptionalaccessoryproteinOS=NialliacirculansOX=1397GN=CEQ21_11540PE=4SV=1	tr|A0A553SGU0|A0A553SGU0_NIACIRNA-bindingtranscriptionalaccessoryproteinOS=NialliacirculansOX=1397GN=CEQ21_11540PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.2782897949219	2	464.29731	926.580068	-0.14153	-6.5714E-05	-0.081827	-3.7992E-05	-0.22336	-0.00010371	464.2970499639164	83.126	0.50415	81.527	81.321	81.825	-1.5988					17	10	2	0	0	0	0.027462	1	7090	7090		35.618	19.145	1	51113			14149	33196	11511	11527	15587	15587					0.11384118971056978
GKVLKNKLF	9	Unmodified	_GKVLKNKLF_					0	0	0			REV__tr|A0A7D6VXK7|A0A7D6VXK7_9CLOTDNArepairATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11665PE=4SV=1	REV__tr|A0A7D6VXK7|A0A7D6VXK7_9CLOTDNArepairATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11665PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.2893676757812	2	523.839677	1045.6648	0.79935	0.00041873	1.8791	0.00098437	2.6785	0.0014031	523.8386132233012	143.29	0.2466	143.29	143.07	143.32	0					5	4	2	0	0	0	0.027462	1	16732	16732		17.365	0	1	13472	+		14150	31781	11512	11528	15588	15588					0.1437948950763257
GKVQLYLF	8	Unmodified	_GKVQLYLF_					0	0	0			REV__ENSG00000109854|ENST00000451739|HTATIP2	REV__ENSG00000109854|ENST00000451739|HTATIP2	MULTI-SECPEP	OvCa9_classI_Rep2	2	483.2919921875	2	484.284203	966.553853	-0.34671	-0.00016791	0.68284	0.00033069	0.33613	0.00016278	484.2839671763161	93.959	1.1608	92.859	92.592	93.752	-1.0995					53	22	4	0	0	0	0.028476	1	8393	8393		37.028	10.232	1	76150	+		14151	17955	11513	11529	15589	15589					0.06923849799545678
GKWLCWPM	8	Unmodified	_GKWLCWPM_					0	0	0		ENST00000395449.7_1_11:47187835-47198404:-|nuORF	ENST00000395449.7_1_11:47187835-47198404:-|nuORF	ENST00000395449.7_1_11:47187835-47198404:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.294921875	2	510.743334	1019.47211	0.063759	3.2564E-05	-0.97849	-0.00049976	-0.91473	-0.00046719	510.74198713359533	65.169	0.27533	65.169	64.995	65.271	0					9	6	2	0	0	0	0.028476	1	5941	5941		37.028	0	1	148410			14152	11289	11514	11530	15590	15590					-0.03684292155548974
GKWSFDDV	8	Unmodified	_GKWSFDDV_					0	0	0		ENSG00000107949|ENST00000278100|BCCIP	ENSG00000107949|ENST00000278100|BCCIP	ENSG00000107949|ENST00000278100|BCCIP	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.7767639160156	2	477.2218	952.429047	0.15421	7.3594E-05	-4.2213	-0.0020145	-4.0671	-0.0019409	477.2195517461131	45.05	0.61435	45.05	44.84	45.454	0					24	13	3	0	0	0	0.028476	1	3083	3083		51.335	26.209	1	383770			14153	2628	11515	11531	15591	15591					-0.049070674076233445
GKWVPPTEAL	10	Unmodified	_GKWVPPTEAL_					0	0	0			REV__ENST00000517447.1_1_8:16935303-16948108:+|nuORF	REV__ENST00000517447.1_1_8:16935303-16948108:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.3037109375	2	549.303124	1096.5917	3.901	0.0021428	-3.9424	-0.0021655	-0.041346	-2.2712E-05	549.3007619235728	131.73	1.2478	130.23	129.94	131.19	-1.5015					44	24	4	0	0	0	0.67931	1	12658	12658		32.812	0.85756	1	54157	+		14154	20453	11516	11532	15592	15592					0.04726315994366814
GKYAHDNVI	9	Unmodified	_GKYAHDNVI_					0	0	0		tr|A0A7D6ZHB7|A0A7D6ZHB7_9CLOTGlutamateracemaseOS=ClostridiumintestinaleOX=36845GN=murIPE=3SV=1	tr|A0A7D6ZHB7|A0A7D6ZHB7_9CLOTGlutamateracemaseOS=ClostridiumintestinaleOX=36845GN=murIPE=3SV=1	tr|A0A7D6ZHB7|A0A7D6ZHB7_9CLOTGlutamateracemaseOS=ClostridiumintestinaleOX=36845GN=murIPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.3016662597656	2	508.761623	1015.50869	-0.57983	-0.00029499	3.9473	0.0020082	3.3675	0.0017133	508.763417198489	59.118	0.83373	59.118	58.892	59.726	0					42	21	3	0	0	0	0.027462	1	5054	5054		40.778	19.831	1	1462000			14155	35570	11517	11533	15593	15593					0.001559992663715093
GKYIEGPLPE	10	Unmodified	_GKYIEGPLPE_					0	0	0			REV__tr|A0A7D6VNC9|A0A7D6VNC9_9CLOTRibonucleaseE/GOS=ClostridiumintestinaleOX=36845GN=HZF06_18405PE=4SV=1	REV__tr|A0A7D6VNC9|A0A7D6VNC9_9CLOTRibonucleaseE/GOS=ClostridiumintestinaleOX=36845GN=HZF06_18405PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3123168945312	2	551.792589	1101.57063	1.2594	0.0006949	1.3326	0.0007353	2.5919	0.0014302	551.7933857883221	147.21	0.34616	147.21	147.06	147.41	0					10	6	2	0	0	0	0.026891	1	17210	17210		24.519	12.312	1	23025	+		14156	31171	11518	11534	15594	15594					0.023903058948462785
GKYLKIFL	8	Unmodified	_GKYLKIFL_					0	0	0			REV__tr|A0A553SSQ5|A0A553SSQ5_NIACITyrosinerecombinaseXerSOS=NialliacirculansOX=1397GN=xerSPE=4SV=1	REV__tr|A0A553SSQ5|A0A553SSQ5_NIACITyrosinerecombinaseXerSOS=NialliacirculansOX=1397GN=xerSPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.76507568359375	2	491.310221	980.605889	2.416	0.001187	1.1361	0.00055818	3.5521	0.0017452	491.3100008520723	94.342	0.42739	94.342	94.22	94.648	0					17	9	3	0	0	0	0.028476	1	10296	10296		33.516	0	1	211910	+		14157	30864	11519	11535	15595	15595					0.11481013213312963
GKYLKIFL	8	Unmodified	_GKYLKIFL_					0	0	0			REV__tr|A0A553SSQ5|A0A553SSQ5_NIACITyrosinerecombinaseXerSOS=NialliacirculansOX=1397GN=xerSPE=4SV=1	REV__tr|A0A553SSQ5|A0A553SSQ5_NIACITyrosinerecombinaseXerSOS=NialliacirculansOX=1397GN=xerSPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	491.310221	980.605889	0.2562	0.00012587	-5.1502	-0.0025303	-4.894	-0.0024045	491.3075428304711	95.074	0.7381	94.046	93.629	94.367	-1.0281	-0.10699	-0.001211	NaN	33.516	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20431	+		14158	30864	11519	11535							0.11481013213312963
GKYLKIFL	8	Unmodified	_GKYLKIFL_					0	0	0			REV__tr|A0A553SSQ5|A0A553SSQ5_NIACITyrosinerecombinaseXerSOS=NialliacirculansOX=1397GN=xerSPE=4SV=1	REV__tr|A0A553SSQ5|A0A553SSQ5_NIACITyrosinerecombinaseXerSOS=NialliacirculansOX=1397GN=xerSPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	491.310221	980.605889	-1.079	-0.00053012	-3.8406	-0.0018869	-4.9196	-0.002417	491.3080437826209	95.9	0.63838	94.072	93.632	94.271	-1.8286	-0.08148	7.5907E-05	NaN	33.516	19	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22248	+		14159	30864	11519	11535							0.11481013213312963
GLADASLLKKV	11	Unmodified	_GLADASLLKKV_					0	0	0		ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	MULTI-MSMS	OvCa99_classI_Rep5	1	557.8484497070312	2	557.845156	1113.67576	2.8413	0.001585	-0.2616	-0.00014593	2.5797	0.0014391	557.8449224602508	86.278	0.84981	86.278	85.994	86.844	0					49	20	3	0	0	0	0.05374	1	9074	9074		125.71	19.03	1	5928300			14160	3997	11520	11536	15596	15596					0.12346847091271229
GLADASLLKKV	11	Unmodified	_GLADASLLKKV_					0	0	0		ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	MULTI-MSMS	OvCa9_classI_Rep2	2	557.8458862304688	2	557.845156	1113.67576	2.1411	0.0011944	-2.8378	-0.0015831	-0.69676	-0.00038868	557.8434469672433	87.694	1.4738	86.263	85.94	87.414	-1.4311					85	29	4	0	0	0	0.059072	2	7661	7661;7668		128.6	11.77	1	624360			14161	3997	11520	11536	15597;15598	15597					0.12346847091271229
GLADASLLKKV	11	Unmodified	_GLADASLLKKV_					0	0	0		ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	MULTI-MSMS	OvCa9_classI_Rep3	3	557.8450927734375	2	557.845156	1113.67576	-0.80933	-0.00045148	0.036223	2.0207E-05	-0.77311	-0.00043127	557.8450607360447	88.469	1.7908	86.338	85.854	87.645	-2.1309					92	34	5	0	0	0	0.05374	4	5382	5378;5382;5388;5395		128.6	32.57	1	916840			14162	3997	11520	11536	15599;15600;15601;15602	15600					0.12346847091271229
GLADASLLKKV	11	Unmodified	_GLADASLLKKV_					0	0	0		ENSG00000130638|ENST00000252934|ATXN10;nc|ENSG00000130638|Q9UBB4-2|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	ENSG00000130638|ENST00000252934|ATXN10	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.8453369140625	2	557.845156	1113.67576	-0.20864	-0.00011639	-0.31416	-0.00017526	-0.5228	-0.00029164	557.8448466771104	88.815	1.6405	86.213	85.882	87.523	-2.6027					83	32	5	0	0	0	0.051425	2	7604	7593;7604		131.62	24.609	1	751530			14163	3997	11520	11536	15603;15604	15604					0.12346847091271229
GLADKVYFL	9	Unmodified	_GLADKVYFL_					0	0	0		CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant;ENSG00000084774|ENST00000264705|CAD;CAD|p.A899Dfs*6|1|0.15|ENSG00000084774|chr2:27232497-27232498|-/A|frameshift_variant	CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	513.291748046875	2	513.286943	1024.55933	1.7893	0.00091843	0.19121	9.8148E-05	1.9805	0.0010166	513.2869331179737	117.34	1.1634	117.34	117.04	118.2	0					52	24	3	0	0	0	0.12515	1	13441	13441		90.37	31.588	1	2326600			14164	176	11521	11537	15605	15605					0.04803528591378381
GLADKVYFL	9	Unmodified	_GLADKVYFL_					0	0	0		CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant;ENSG00000084774|ENST00000264705|CAD;CAD|p.A899Dfs*6|1|0.15|ENSG00000084774|chr2:27232497-27232498|-/A|frameshift_variant	CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	513.2880859375	2	513.286943	1024.55933	-1.2672	-0.00065045	0.88877	0.00045619	-0.37846	-0.00019426	513.2872663063558	117.98	1.5888	117.83	117.54	119.13	-0.14754					49	31	2	0	0	0	0.46356	3	11327	11315;11320;11327		45.972	3.6114	1	186490			14165	176	11521	11537	15606;15607;15608	15608					0.04803528591378381
GLADKVYFL	9	Unmodified	_GLADKVYFL_					0	0	0		CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant;ENSG00000084774|ENST00000264705|CAD;CAD|p.A899Dfs*6|1|0.15|ENSG00000084774|chr2:27232497-27232498|-/A|frameshift_variant	CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	513.2882080078125	2	513.286943	1024.55933	0.44653	0.0002292	-0.65768	-0.00033758	-0.21115	-0.00010838	513.2864764534966	118.83	1.7799	117.81	117.49	119.27	-1.0271					53	35	2	0	0	0	0.13504	3	8981	8981;8987;8999		87.696	30.975	1	188900			14166	176	11521	11537	15609;15610;15611	15609					0.04803528591378381
GLADKVYFL	9	Unmodified	_GLADKVYFL_					0	0	0		CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant;ENSG00000084774|ENST00000264705|CAD;CAD|p.A899Dfs*6|1|0.15|ENSG00000084774|chr2:27232497-27232498|-/A|frameshift_variant	CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.2900390625	2	513.286943	1024.55933	-1.6281	-0.00083569	1.424	0.00073094	-0.20407	-0.00010475	513.2875763203416	119.12	1.4581	117.77	117.42	118.88	-1.3444					46	27	2	0	0	0	0.21231	2	11174	11163;11174		74.255	13.283	1	198750			14167	176	11521	11537	15612;15613	15613					0.04803528591378381
GLAEDSPKM	9	Unmodified	_GLAEDSPKM_					0	0	0		RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.T5031Rfs*29|1|0.06|ENSG00000173821|chr17:80389261-80389262|-/TCGG|frameshift_variant;RNF213|p.G5057Vfs*8|1|0.18|ENSG00000173821|chr17:80389340-80389340|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.N2986Tfs*32|1|0.9|ENSG00000173821|chr17:80347289-80347289|G/-|frameshift_variant;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	474.2303466796875	2	474.228768	946.442982	-0.29344	-0.00013916	0.094831	4.4971E-05	-0.19861	-9.4186E-05	474.22867447087845	58.988	0.64859	58.988	58.655	59.304	0					36	16	3	0	0	0	0.053172	1	5042	5042		116.9	14.13	1	2453900			14168	7416;32788	11522	11538	15614	15614					-0.0323815797082716
GLAFFIFL	8	Unmodified	_GLAFFIFL_					0	0	0		ENSG00000110446|ENST00000227880|SLC15A3;ENST00000540272.1_1_11:60711109-60714230:-|nuORF;SLC15A3|p.F246Lfs*69|1|0.07|ENSG00000110446|chr11:60946645-60946645|G/-|frameshift_variant	ENSG00000110446|ENST00000227880|SLC15A3	ENSG00000110446|ENST00000227880|SLC15A3	MULTI-SECPEP	OvCa9_classI_Rep3	3	463.2769470214844	2	464.270564	926.526576	-1.3692	-0.00063566	3.2934	0.001529	1.9242	0.00089335	464.2698069028741	92.372	1.4236	90.348	89.941	91.365	-2.0241					50	29	3	0	0	0	0.028476	1	5912	5912		33.493	6.6969	1	228590			14169	2778	11523	11539	15615	15615					0.060373662591814536
GLAHLHMEI	9	Unmodified	_GLAHLHMEI_					0	0	0		nc|ENSG00000135503|P36896-4|ACVR1B;ENST00000563121.1_1_12:52377838-52385653:+|nuORF;nc|ENSG00000123612|Q8NER5-2|ACVR1C;nc|ENSG00000123612|Q8NER5-3|ACVR1C;nc|ENSG00000106799|P36897-3|TGFBR1;nc|ENSG00000123612|Q8NER5-4|ACVR1C;nc|ENSG00000135503|P36896-5|ACVR1B;nc|ENSG00000135503|P36896-2|ACVR1B;nc|ENSG00000135503|P36896-3|ACVR1B;ENSG00000123612|ENST00000243349|ACVR1C;ENSG00000106799|ENST00000374994|TGFBR1;ENSG00000135503|ENST00000257963|ACVR1B;nc|ENSG00000106799|P36897-2|TGFBR1	nc|ENSG00000135503|P36896-4|ACVR1B	nc|ENSG00000135503|P36896-4|ACVR1B	MULTI-MSMS	OvCa99_classI_Rep5	1	510.768798828125	2	510.768394	1019.52224	1.0741	0.00054863	1.5978	0.00081608	2.6719	0.0013647	510.76902445757025	80.997	0.62785	80.997	80.786	81.413	0					34	14	3	0	0	0	0.25214	1	8336	8336		68.485	3.0193	1	982160			14170	15033	11524	11540	15616	15616					0.013255337739678907
GLAHPHRVE	9	Unmodified	_GLAHPHRVE_					0	0	0			REV__ENST00000302251.9_1_11:104034783-104035068:-|nuORF	REV__ENST00000302251.9_1_11:104034783-104035068:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.3023986816406	2	508.275232	1014.53591	0.26312	0.00013373	1.6019	0.00081422	1.865	0.00094795	508.2759857605525	113.7	1.974	112.62	112.2	114.17	-1.0753					71	38	3	0	0	0	0.027462	1	8539	8539		18.324	0	1	113840	+		14171	24256	11525	11541	15617	15617					0.029225275974113174
GLAIDKNH	8	Unmodified	_GLAIDKNH_					0	0	0			REV__nc|ENSG00000067369|Q12888|TP53BP1	REV__nc|ENSG00000067369|Q12888|TP53BP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.77093505859375	2	434.237784	866.461016	-0.44235	-0.00019209	-2.7677	-0.0012018	-3.2101	-0.0013939	434.23745142882467	43.246	0.36757	40.239	40.01	40.378	-3.0074					8	6	2	0	0	0	0.028476	1	2037	2037		18.324	0.95945	1	3625.3	+		14172	16833	11526	11542	15618	15618					0.022443450661853603
GLAIGANVQV	10	Unmodified	_GLAIGANVQV_					0	0	0			REV__TTC12|p.L695Afs*10|1|0.03|ENSG00000149292|chr11:113366264-113366265|-/G|frameshift_variant	REV__TTC12|p.L695Afs*10|1|0.03|ENSG00000149292|chr11:113366264-113366265|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	470.7956848144531	2	471.274367	940.53418	0.079392	3.7415E-05	0.21114	9.9503E-05	0.29053	0.00013692	471.2741677495741	79.03	1.6697	77.29	76.459	78.128	-1.7398					52	32	2	0	0	0	0.026552	1	6691	6691		53.351	10.877	1	100450	+		14173	20154	11527	11543	15619	15619					0.0615347378881097
GLAIYCKEG	9	Unmodified	_GLAIYCKEG_					0	0	0			REV__ENSG00000167778|ENST00000301463|SPRYD3	REV__ENSG00000167778|ENST00000301463|SPRYD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	476.25323486328125	2	477.241678	952.468803	-0.27827	-0.0001328	4.1453	0.0019783	3.867	0.0018455	477.2436905243693	39.095	0.31487	39.095	38.927	39.242	0					13	6	3	0	0	0	0.027462	1	2270	2270		23.042	3.6825	1	186510	+		14174	21309	11528	11544	15620	15620					-0.00933263728552447
GLAKRVWSL	9	Unmodified	_GLAKRVWSL_					0	0	0		ENSG00000148362|ENST00000371620|PAXX;ENST00000483807.5_1_9:139887454-139888254:+|nuORF	ENSG00000148362|ENST00000371620|PAXX	ENSG00000148362|ENST00000371620|PAXX	MULTI-MSMS	OvCa99_classI_Rep5	1	515.3143920898438	2	515.313826	1028.6131	1.8226	0.00093923	-0.092982	-4.7915E-05	1.7297	0.00089132	515.3135898132728	77.521	0.88307	77.521	77.085	77.968	0					37	20	2	0	0	0	0.11471	1	7807	7807		93.195	18.152	1	3124300			14175	5406	11529	11545	15621	15621					0.09993745813744681
GLAKSIHHA	9	Unmodified	_GLAKSIHHA_					0	0	0		ENSG00000170889|ENST00000302907|RPS9;ENST00000498085.1_1_19:50222822-50223059:-|nuORF	ENSG00000170889|ENST00000302907|RPS9	ENSG00000170889|ENST00000302907|RPS9	MULTI-MSMS	OvCa99_classI_Rep5	1	467.266845703125	2	467.266876	932.519199	-0.36383	-0.00017	-0.18713	-8.744E-05	-0.55096	-0.00025744	467.2667923320578	29.362	0.79842	29.362	29.137	29.935	0					34	15	4	0	0	0	0.047062	1	1032	1032		120.62	54.818	1	2003200			14176	7148	11530	11546	15622	15622					0.05024026711453189
GLAKSIHHA	9	Unmodified	_GLAKSIHHA_					0	0	0		ENSG00000170889|ENST00000302907|RPS9;ENST00000498085.1_1_19:50222822-50223059:-|nuORF	ENSG00000170889|ENST00000302907|RPS9	ENSG00000170889|ENST00000302907|RPS9	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.2662353515625	2	467.266876	932.519199	0.056921	2.6597E-05	0.21509	0.0001005	0.27201	0.0001271	467.2668397699727	22.187	1.3509	20.848	20.321	21.672	-1.3386					61	30	3	0	0	0	0.56889	1	260	260		35.618	10.168	1	128670			14177	7148	11530	11546	15623	15623					0.05024026711453189
GLAKVKVMV	9	Unmodified	_GLAKVKVMV_					0	0	0		RALGAPB|p.C811Yfs*8|1|0.28|ENSG00000170471|chr20:38539828-38539829|GC/-|frameshift_variant;RALGAPB|p.D897Efs*7|1|0.04|ENSG00000170471|chr20:38541169-38541169|T/-|frameshift_variant;nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;ENST00000461423.1_1_20:37137783-37175090:+|nuORF;nc|ENSG00000170471|Q86X10-2|RALGAPB	RALGAPB|p.C811Yfs*8|1|0.28|ENSG00000170471|chr20:38539828-38539829|GC/-|frameshift_variant	RALGAPB|p.C811Yfs*8|1|0.28|ENSG00000170471|chr20:38539828-38539829|GC/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	472.80352783203125	2	472.801706	943.588859	0.93553	0.00044232	-0.92364	-0.0004367	0.011888	5.6205E-06	472.801218768169	67.076	0.826	67.076	66.816	67.642	0					37	20	3	0	0	0	0.14739	1	6251	6251		85.359	16.875	1	3040200			14178	7107	11531	11547	15624	15624					0.1148076933586708
GLALGLGLGLG	11	Unmodified	_GLALGLGLGLG_					0	0	0			REV__ENSG00000103642|ENST00000261893|LACTB	REV__ENSG00000103642|ENST00000261893|LACTB	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.796630859375	2	470.794935	939.575317	-0.080631	-3.7961E-05	-0.4788	-0.00022542	-0.55943	-0.00026338	470.7946553269519	80.301	1.9102	77.59	77.123	79.033	-2.7106					99	38	4	0	0	0	0.41157	1	6535	6535		60.294	0	1	2410000	+		14179	17628	11532	11548	15625	15625					0.10311234828282068
GLALPSRVQ	9	Unmodified	_GLALPSRVQ_					0	0	0		nc|ENSG00000230246|P0DKV0-2|SPATA31C1;nc|ENSG00000177910|B4DYI2|SPATA31C2;nc|ENSG00000230246|P0DKV0|SPATA31C1	nc|ENSG00000230246|P0DKV0-2|SPATA31C1	nc|ENSG00000230246|P0DKV0-2|SPATA31C1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.7961730957031	2	470.782359	939.550165	0.27467	0.00012931	-2.7974	-0.001317	-2.5228	-0.0011877	470.78074772604185	79.762	1.4403	77.011	76.085	77.525	-2.7514					37	29	2	0	0	0	0.02744	1	6547	6547		62.107	0	1	70184			14180	15193	11533	11549	15626	15626					0.07797180025715988
GLALRKMP	8	Unmodified	_GLALRKMP_					0	0	0		ENST00000559358.1_1_17:62006588-62007812:-|nuORF	ENST00000559358.1_1_17:62006588-62007812:-|nuORF	ENST00000559358.1_1_17:62006588-62007812:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	442.2850036621094	2	443.270573	884.526593	-0.7255	-0.00032159	-2.7044	-0.0011988	-3.4299	-0.0015204	443.269181209001	83.602	0.80055	81.341	80.766	81.566	-2.261					23	16	3	0	0	0	0.028476	1	4753	4753		35.201	14.719	1	26334			14181	13716	11534	11550	15627	15627					0.07971042987537658
GLAPLSWL	8	Unmodified	_GLAPLSWL_					0	0	0			REV__ENST00000493275.5_1_6:26383438-26385267:+|nuORF	REV__ENST00000493275.5_1_6:26383438-26385267:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	428.267578125	2	428.749996	855.485439	-0.8471	-0.00036319	-3.8918	-0.0016686	-4.7389	-0.0020318	428.74816822397804	75.31	2.0752	73.456	71.968	74.044	-1.854					67	39	2	0	0	0	0.028476	1	6049	6049		49.211	0	1	43289	+		14182	24768	11535	11551	15628	15628					0.051916052197157114
GLAPNPPKSF	10	Unmodified	_GLAPNPPKSF_					0	0	0			REV__ENST00000474234.5_1_2:113012483-113012558:-|nuORF	REV__ENST00000474234.5_1_2:113012483-113012558:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	514.282958984375	2	514.282192	1026.54983	-0.30044	-0.00015451	-0.16104	-8.282E-05	-0.46148	-0.00023733	514.2820526803347	56.394	1.1647	56.394	55.973	57.138	0					71	27	3	0	0	0	0.19075	1	4667	4667		95.815	2.6719	1	4126000	+		14183	19892	11536	11552	15629	15629					0.03761760305860662
GLARGRVWR	9	Unmodified	_GLARGRVWR_					0	0	0			REV__ENSG00000140044.13,JDP2,chr14,+,I2.1,75428253,75428356|147|3.96|1|intron	REV__ENSG00000140044.13,JDP2,chr14,+,I2.1,75428253,75428356|147|3.96|1|intron	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.8074340820312	2	535.820141	1069.62573	0.23078	0.00012366	-2.0027	-0.0010731	-1.7719	-0.00094944	535.8190417846748	65.841	1.3418	63.146	62.872	64.213	-2.6958					38	26	2	0	0	0	0.027448	1	5085	5085		44.117	12.162	1	163490	+		14184	19651	11537	11553	15630	15630					0.09370201996648575
GLARLYIRAP	10	Unmodified	_GLARLYIRAP_					0	0	0			REV__ENSG00000129744|ENST00000250693|ART1	REV__ENSG00000129744|ENST00000250693|ART1	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.321533203125	2	565.345658	1128.67676	-0.22127	-0.0001251	-0.47804	-0.00027026	-0.69931	-0.00039535	565.3454027234241	33.705	0.48395	33.705	33.533	34.017	0					12	9	2	0	0	0	0.027021	1	1601	1601		29.15	12.676	1	50921	+		14185	18909	11538	11554	15631	15631					0.1175710625082047
GLARPKELLA	10	Unmodified	_GLARPKELLA_					0	0	0			REV__ENST00000262662.5_1_1:51435291-51435357:+|nuORF	REV__ENST00000262662.5_1_1:51435291-51435357:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	535.326904296875	2	534.332216	1066.64988	-1.4035	-0.00074996	0.97352	0.00052018	-0.43002	-0.00022977	534.3326257043938	59.81	1.0919	57.04	56.514	57.606	-2.7702					36	20	2	0	0	0	0.026688	1	4335	4335		32.812	0	1	70517	+		14186	23982	11539	11555	15632	15632					0.11921997639660731
GLARPKGKLL	10	Unmodified	_GLARPKGKLL_					0	0	0			REV__nc|ENSG00000082175|P06401-2|PGR	REV__nc|ENSG00000082175|P06401-2|PGR	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.7843017578125	2	526.850576	1051.6866	-2.611	-0.0013756	1.8192	0.00095844	-0.79184	-0.00041718	526.8519335874553	49.963	0.46759	46.821	46.507	46.974	-3.1416					11	8	2	0	0	0	0.027228	1	2855	2855		16.473	0	1	11900	+		14187	17082	11540	11556	15633	15633					0.1628229425623431
GLARRRLQT	9	Unmodified	_GLARRRLQT_					0	0	0			REV__ENSG00000247595|ENST00000635674|MISFA	REV__ENSG00000247595|ENST00000635674|MISFA	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.8074340820312	2	535.830706	1069.64686	0.32465	0.00017396	1.5645	0.00083828	1.8891	0.0010122	535.8311962528144	65.795	1.0455	63.1	62.72	63.766	-2.6958					29	20	2	0	0	0	0.027462	1	5085	5085		35.618	4.0885	1	36781	+		14188	23481	11541	11557	15634	15634					0.11482167305484836
GLASQLLKTL	10	Unmodified	_GLASQLLKTL_					0	0	0			REV__nc|ENSG00000223519|B7ZC32|KIF28P	REV__nc|ENSG00000223519|B7ZC32|KIF28P	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.8195190429688	2	522.326599	1042.63865	0.9008	0.00047051	-2.066	-0.0010791	-1.1652	-0.0006086	522.3254567332154	67.553	0.73918	64.062	63.739	64.478	-3.4902					22	14	2	0	0	0	0.026891	1	5013	5013		31.53	2.3803	1	43892	+		14189	29135	11542	11558	15635	15635					0.11903175545535305
GLATDVQTV	9	Unmodified	_GLATDVQTV_					0	0	0		ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	ENSG00000277791|ENST00000619426|PSMB3	MULTI-MSMS	OvCa99_classI_Rep5	1	452.2438049316406	2	452.242732	902.470912	2.3499	0.0010627	-0.055443	-2.5074E-05	2.2944	0.0010376	452.2427353796192	85.107	1.4684	85.107	84.882	86.35	0					75	35	3	0	0	0	0.0078217	3	8938	8908;8938;8977		180.93	64.022	1	21443000			14190	9586	11543	11559	15636;15637;15638	15637					0.015774882809068913
GLATVIRYR	9	Unmodified	_GLATVIRYR_					0	0	0		ENSG00000197157|ENST00000354725|SND1;ZFR-SND1|1|fusion	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.796630859375	2	524.816733	1047.61891	-0.86603	-0.0004545	0.4215	0.00022121	-0.44453	-0.0002333	524.8166262756076	77.249	1.0197	74.432	74.244	75.263	-2.8165					30	20	2	0	0	0	0.027462	1	6195	6195		27.882	0	1	69743			14191	8684	11544	11560	15639	15639					0.09700844325402613
GLAVHQIITI	10	Unmodified	_GLAVHQIITI_					0	0	0		ENSG00000196581|ENST00000378191|AJAP1	ENSG00000196581|ENST00000378191|AJAP1	ENSG00000196581|ENST00000378191|AJAP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	533.8085327148438	2	532.826766	1063.63898	-1.2446	-0.00066317	2.9748	0.0015851	1.7302	0.00092189	532.8281124815056	95.252	0.44456	94.224	93.972	94.417	-1.0281					13	8	2	0	0	0	0.027056	1	8526	8526		27.882	17.017	1	13068			14192	8629	11545	11561	15640	15640					0.1097059526537123
GLAVQMTRRAH	11	Unmodified	_GLAVQMTRRAH_					0	0	0			REV__ENSG00000135966|ENST00000393359|TGFBRAP1	REV__ENSG00000135966|ENST00000393359|TGFBRAP1	MULTI-MSMS	OvCa9_classI_Rep2	2	620.3397216796875	2	620.340581	1238.66661	-1.0739	-0.00066617	-1.8174	-0.0011274	-2.8913	-0.0017936	620.3394091242254	46.735	2.133	44.025	43.596	45.729	-2.7097					112	42	4	0	0	0	0.62666	1	2802	2802		40.058	2.2467	1	367300	+		14193	19342	11546	11562	15641	15641					0.05682175253969035
GLAYGLRTIY	10	Unmodified	_GLAYGLRTIY_					0	0	0		tr|A0A7D6VY68|A0A7D6VY68_9CLOT6-phospho-alpha-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15635PE=3SV=1	tr|A0A7D6VY68|A0A7D6VY68_9CLOT6-phospho-alpha-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15635PE=3SV=1	tr|A0A7D6VY68|A0A7D6VY68_9CLOT6-phospho-alpha-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15635PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	564.8074340820312	2	563.816399	1125.61824	-0.75368	-0.00042494	-0.22302	-0.00012574	-0.9767	-0.00055068	563.8163292279182	99.966	0.64206	98.281	97.985	98.627	-1.685					25	12	3	0	0	0	0.026891	1	6786	6786		39.253	0	1	73203			14194	35320	11547	11563	15642	15642					0.06046004885729417
GLCNPETVPTD	11	Unmodified	_GLCNPETVPTD_					0	0	0		nc|ENSG00000159363|Q9NQ11-2|ATP13A2;nc|ENSG00000159363|Q9NQ11-3|ATP13A2;ENSG00000159363|ENST00000326735|ATP13A2;ATP13A2|p.P905Sfs*10|1|0.15|ENSG00000159363|chr1:16988371-16988372|-/A|frameshift_variant	nc|ENSG00000159363|Q9NQ11-2|ATP13A2	nc|ENSG00000159363|Q9NQ11-2|ATP13A2	MULTI-MSMS	OvCa99_classI_Rep5	1	573.2640991210938	2	573.260796	1144.50704	1.2061	0.00069143	1.8667	0.0010701	3.0728	0.0017615	573.2616969965391	130.84	0.76161	130.84	130.53	131.29	0					36	15	3	0	0	0	0.65947	1	15181	15181		39.253	0	1	563920			14195	6007	11548	11564	15643	15643					-0.059434226045596006
GLCPGSPLLH	10	Unmodified	_GLCPGSPLLH_					0	0	0			REV__ENST00000607780.5_1_2:96685347-96687379:+|nuORF	REV__ENST00000607780.5_1_2:96685347-96687379:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.78778076171875	2	497.262945	992.511337	-0.83878	-0.00041709	-4.0078	-0.0019929	-4.8465	-0.00241	497.2598731308202	46.226	0.78475	43.154	42.613	43.398	-3.0724					21	14	3	0	0	0	0.026982	1	2349	2349		30.504	0	1	16334	+		14196	28090	11549	11565	15644	15644					0.014781313996763856
GLDDIKDLKV	10	Unmodified	_GLDDIKDLKV_					0	0	0		ENSG00000155363|ENST00000369645|MOV10;ENST00000488160.5_1_1:113239361-113241636:+|nuORF	ENSG00000155363|ENST00000369645|MOV10	ENSG00000155363|ENST00000369645|MOV10	MULTI-MSMS	OvCa99_classI_Rep5	1	558.3209228515625	2	558.318971	1114.62339	2.8686	0.0016016	-0.6295	-0.00035146	2.2391	0.0012501	558.3185302930586	91.686	0.63712	91.686	91.415	92.052	0					44	14	4	0	0	0	0.066656	2	9894	9872;9894		122.94	24.357	1	5198100			14197	5781	11550	11566	15645;15646	15646					0.0706626395767671
GLDDIKDLKV	10	Unmodified	_GLDDIKDLKV_					0	0	0		ENSG00000155363|ENST00000369645|MOV10;ENST00000488160.5_1_1:113239361-113241636:+|nuORF	ENSG00000155363|ENST00000369645|MOV10	ENSG00000155363|ENST00000369645|MOV10	MULTI-MATCH	OvCa9_classI_Rep3	3		2	558.318971	1114.62339	-1.281	-0.00071519	1.4896	0.00083166	0.20861	0.00011647	558.319661097913	93.973	1.1191	92.011	91.729	92.848	-1.9617	0.10025	0.0015606	NaN	122.94	46	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	273450			14198	5781	11550	11566							0.0706626395767671
GLDDIKDLKV	10	Unmodified	_GLDDIKDLKV_					0	0	0		ENSG00000155363|ENST00000369645|MOV10;ENST00000488160.5_1_1:113239361-113241636:+|nuORF	ENSG00000155363|ENST00000369645|MOV10	ENSG00000155363|ENST00000369645|MOV10	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	558.318971	1114.62339	0.47068	0.00026279	-0.64731	-0.0003614	-0.17663	-9.8616E-05	558.3184839760867	94.503	1.1995	92.035	91.762	92.962	-2.4685	0.12422	-0.00082558	NaN	122.94	48	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	270780			14199	5781	11550	11566							0.0706626395767671
GLDIDGIYRV	10	Unmodified	_GLDIDGIYRV_					0	0	0		nc|ENSG00000165322|Q8IWW6-3|ARHGAP12;nc|ENSG00000165322|Q8IWW6-2|ARHGAP12;nc|ENSG00000165322|Q8IWW6-4|ARHGAP12;ENSG00000165322|ENST00000344936|ARHGAP12	nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	nc|ENSG00000165322|Q8IWW6-3|ARHGAP12	MULTI-MSMS	OvCa9_classI_Rep2	2	560.802978515625	2	560.803488	1119.59242	1.1017	0.00061783	-1.3919	-0.00078059	-0.29022	-0.00016276	560.8026899663035	112.87	1.1852	112.75	112.48	113.66	-0.12174					53	23	3	0	0	0	0.55109	1	10699	10699		47.96	3.5823	1	180650			14200	6550	11551	11567	15647	15647					0.03741110643431966
GLDLSQHKQL	10	Unmodified	_GLDLSQHKQL_					0	0	0			REV__nc|ENSG00000134242|Q9Y2R2-6|PTPN22	REV__nc|ENSG00000134242|Q9Y2R2-6|PTPN22	MULTI-MSMS	OvCa99_classI_Rep5	1	569.81396484375	2	569.814387	1137.61422	-0.036023	-2.0526E-05	0.15611	8.8956E-05	0.12009	6.843E-05	569.8146198085153	69.087	0.40854	69.087	68.939	69.347	0					20	9	3	0	0	0	0.47142	1	6558	6558		58.23	0	1	858750	+		14201	19183	11552	11568	15648	15648					0.05091915391994917
GLDLSQHKQL	10	Unmodified	_GLDLSQHKQL_					0	0	0			REV__nc|ENSG00000134242|Q9Y2R2-6|PTPN22	REV__nc|ENSG00000134242|Q9Y2R2-6|PTPN22	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	569.814387	1137.61422	-0.036023	-2.0526E-05	0.15611	8.8956E-05	0.12009	6.843E-05	569.8146198085153	69.087	0.40854	69.087	68.939	69.347	0	0	0	NaN	58.23	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	858750	+		14202	19183	11552	11568							0.05091915391994917
GLDNINVFL	9	Unmodified	_GLDNINVFL_					0	0	0		ENSG00000136153|ENST00000377534|LMO7;ENST00000563635.5_1_13:76195947-76378681:+|nuORF;nc|ENSG00000136153|Q8WWI1-3|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7	ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1-3|LMO7	nc|ENSG00000136153|Q8WWI1-3|LMO7	MULTI-MSMS	OvCa99_classI_Rep5	1	502.77532958984375	2	502.7742	1003.53385	1.4702	0.00073918	-0.18681	-9.3921E-05	1.2834	0.00064525	502.7742882548864	148.98	1.1252	148.98	148.42	149.55	0					53	22	3	0	0	0	0.35444	1	17433	17433		56.721	0	1	341640			14203	4464;15035	11553	11569	15649	15649					0.032220540689422705
GLDPAVIKV	9	Unmodified	_GLDPAVIKV_					0	0	0		ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	MULTI-MSMS	OvCa99_classI_Rep5	1	456.2824401855469	2	456.28166	910.548768	2.417	0.0011028	-0.14753	-6.7317E-05	2.2695	0.0010355	456.2814594562395	95.816	1.0066	95.816	95.161	96.168	0					37	23	3	0	0	0	0.16562	1	10478	10478		82.241	28.889	1	843640			14204	6606	11554	11570	15650	15650					0.08991545936953571
GLDRNAPSV	9	Unmodified	_GLDRNAPSV_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	OvCa99_classI_Rep5	1	464.7469177246094	2	464.745973	927.477394	-0.413	-0.00019194	0.35508	0.00016502	-0.057917	-2.6917E-05	464.74599304952443	54.952	0.68303	54.952	54.59	55.273	0					35	15	3	0	0	0	0.22621	1	4468	4468		71.877	8.5712	1	1399400			14205	7583	11555	11571	15651	15651					0.010754262322734576
GLDRNAPSV	9	Unmodified	_GLDRNAPSV_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	464.745973	927.477394	-0.41715	-0.00019387	-0.15235	-7.0803E-05	-0.5695	-0.00026467	464.74600040463275	58.528	0.65289	55.136	55.002	55.655	-3.392	0.091996	-0.00016828	NaN	71.877	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55349			14206	7583	11555	11571							0.010754262322734576
GLDRQLAPS	9	Unmodified	_GLDRQLAPS_					0	0	0			REV__ENSG00000138892|ENST00000433387|TTLL8	REV__ENSG00000138892|ENST00000433387|TTLL8	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.7655334472656	2	478.761623	955.508694	-0.7243	-0.00034677	4.3189	0.0020677	3.5946	0.001721	478.76350088187746	45.817	0.99084	42.779	42.595	43.586	-3.0385					34	18	2	0	0	0	0.31747	1	2387	2387		60.972	0.67798	1	565240	+		14207	19584	11556	11572	15652	15652					0.029159992663721823
GLDSSFTKWYV	11	Unmodified	_GLDSSFTKWYV_					0	0	0			REV__ENST00000565743.1_1_16:84682580-84682835:+|nuORF	REV__ENST00000565743.1_1_16:84682580-84682835:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	434.8824462890625	3	434.883677	1301.6292	-0.60698	-0.00026396	-3.4095	-0.0014827	-4.0165	-0.0017467	434.882072256453	44.013	0.56575	44.013	43.694	44.26	0					25	12	3	0	0	0	0.54114	1	2953	2953		50.034	1.432	1	482700	+		14208	27689	11557	11573	15653	15653					-0.009546375306854316
GLDSSFTKWYV	11	Unmodified	_GLDSSFTKWYV_					0	0	0			REV__ENST00000565743.1_1_16:84682580-84682835:+|nuORF	REV__ENST00000565743.1_1_16:84682580-84682835:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	434.883677	1301.6292	-0.60698	-0.00026396	-3.4095	-0.0014827	-4.0165	-0.0017467	434.882072256453	44.013	0.56575	44.013	43.694	44.26	0	-0.1054	-0.0030323	NaN	50.034	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	482700	+		14209	27689	11557	11573							-0.009546375306854316
GLDSSFTKWYV	11	Unmodified	_GLDSSFTKWYV_					0	0	0			REV__ENST00000565743.1_1_16:84682580-84682835:+|nuORF	REV__ENST00000565743.1_1_16:84682580-84682835:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	434.883677	1301.6292	0.5061	0.0002201	0.30772	0.00013382	0.81383	0.00035392	435.2181467014324	47.296	1.1631	44.224	43.911	45.074	-3.0724	0.1054	0.0018174	NaN	50.034	36	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88056	+		14210	27689	11557	11573							-0.009546375306854316
GLDSVNTTQL	10	Unmodified	_GLDSVNTTQL_					0	0	0			REV__nc|ENSG00000165495|Q96KN3-2|PKNOX2	REV__nc|ENSG00000165495|Q96KN3-2|PKNOX2	MULTI-MSMS	OvCa9_classI_Rep3	3	524.2708129882812	2	524.269478	1046.5244	0.85689	0.00044924	2.5747	0.0013499	3.4316	0.0017991	524.2706948277186	120.46	3.5918	119.43	118.68	122.27	-1.0271					167	69	5	0	0	0	0.09252	1	9172	9172		115.49	22.299	1	1392700	+		14211	21094	11558	11574	15654	15654					0.0030024099276033667
GLDTTKSMV	9	Unmodified	_GLDTTKSMV_					0	0	0		ENSG00000167676|ENST00000301286|PLIN4	ENSG00000167676|ENST00000301286|PLIN4	ENSG00000167676|ENST00000301286|PLIN4	MULTI-MSMS	OvCa99_classI_Rep5	1	476.2455749511719	2	476.244418	950.474282	0.28499	0.00013572	-0.04158	-1.9802E-05	0.24341	0.00011592	476.24430041932897	62.482	0.69488	62.482	62.165	62.86	0					50	16	4	0	0	0	0.049969	2	5550	5550;5578		118.74	36.503	1	10104000			14212	6830	11559	11575	15655;15656	15655					-0.0029358493674180863
GLDYPLKGI	9	Unmodified	_GLDYPLKGI_					0	0	0		tr|A0A553SMT7|A0A553SMT7_NIACIPyruvateformate-lyase-activatingenzymeOS=NialliacirculansOX=1397GN=pflAPE=3SV=1	tr|A0A553SMT7|A0A553SMT7_NIACIPyruvateformate-lyase-activatingenzymeOS=NialliacirculansOX=1397GN=pflAPE=3SV=1	tr|A0A553SMT7|A0A553SMT7_NIACIPyruvateformate-lyase-activatingenzymeOS=NialliacirculansOX=1397GN=pflAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.2778625488281	2	488.279118	974.543683	-2.1652	-0.0010572	1.8878	0.00092179	-0.2774	-0.00013545	488.27995204393716	125.95	1.1751	124.54	124.14	125.32	-1.4143					40	23	3	0	0	0	0.53957	1	11991	11991		38.806	0.99462	1	67827			14213	33870	11560	11576	15657	15657					0.055392420743373805
GLEPQGFESE	10	Unmodified	_GLEPQGFESE_					0	0	0			REV__PRUNE2|p.V2237Cfs*11|1|0.06|ENSG00000106772|chr9:76705569-76705570|-/T|frameshift_variant	REV__PRUNE2|p.V2237Cfs*11|1|0.06|ENSG00000106772|chr9:76705569-76705570|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	546.7814331054688	2	546.745836	1091.47712	0.91843	0.00050215	-0.81681	-0.00044659	0.10162	5.5562E-05	546.7450226408652	122.67	0.89258	121.64	121.37	122.27	-1.0286					26	16	2	0	0	0	0.027056	1	9414	9414		27.882	13.017	1	36477	+		14214	17824	11561	11577	15658	15658					-0.06496038278214655
GLEPQKIGQ	9	Unmodified	_GLEPQKIGQ_					0	0	0		chr16:3000118-3000714|137|10.42|0.41|4.65|+|2|GREP1,GREP1|1	chr16:3000118-3000714|137|10.42|0.41|4.65|+|2|GREP1,GREP1|1	chr16:3000118-3000714|137|10.42|0.41|4.65|+|2|GREP1,GREP1|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.7978820800781	2	485.271824	968.529095	0.49185	0.00023868	-0.84034	-0.00040779	-0.34849	-0.00016911	485.2714218909768	90.068	1.1069	87.493	86.9	88.007	-2.575					29	21	2	0	0	0	0.027462	1	7737	7737		14.865	0	1	41255			14215	374	11562	11578	15659	15659					0.043571699261860886
GLEPQKIGQ	9	Unmodified	_GLEPQKIGQ_					0	0	0		chr16:3000118-3000714|137|10.42|0.41|4.65|+|2|GREP1,GREP1|1	chr16:3000118-3000714|137|10.42|0.41|4.65|+|2|GREP1,GREP1|1	chr16:3000118-3000714|137|10.42|0.41|4.65|+|2|GREP1,GREP1|1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	485.271824	968.529095	2.5062	0.0012162	-0.50958	-0.00024729	1.9966	0.00096888	485.27165260818776	87.75	0.87865	87.75	87.42	88.298	0	0.17632	0.00044506	NaN	9.7057	26	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	289130			14216	374	11562	11578							0.043571699261860886
GLEPQKIGQ	9	Unmodified	_GLEPQKIGQ_					0	0	0		chr16:3000118-3000714|137|10.42|0.41|4.65|+|2|GREP1,GREP1|1	chr16:3000118-3000714|137|10.42|0.41|4.65|+|2|GREP1,GREP1|1	chr16:3000118-3000714|137|10.42|0.41|4.65|+|2|GREP1,GREP1|1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	485.271824	968.529095	1.7592	0.00085369	-3.178	-0.0015422	-1.4188	-0.0006885	485.27091246023747	88.853	1.3308	87.486	86.888	88.219	-1.3676	-0.088374	-0.0021447	NaN	9.7057	43	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33564			14217	374	11562	11578							0.043571699261860886
GLEPQKIGQ	9	Unmodified	_GLEPQKIGQ_					0	0	0		chr16:3000118-3000714|137|10.42|0.41|4.65|+|2|GREP1,GREP1|1	chr16:3000118-3000714|137|10.42|0.41|4.65|+|2|GREP1,GREP1|1	chr16:3000118-3000714|137|10.42|0.41|4.65|+|2|GREP1,GREP1|1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	485.271824	968.529095	-0.88241	-0.00042821	-0.25124	-0.00012192	-1.1337	-0.00055013	485.2721192786473	89.647	1.304	87.567	86.752	88.056	-2.0805	-0.0070645	0.0006958	NaN	9.7057	40	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58397			14218	374	11562	11578							0.043571699261860886
GLFALPFGR	9	Unmodified	_GLFALPFGR_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;TRIP12-MFI2|1|fusion	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MSMS	OvCa9_classI_Rep2	2	489.2819519042969	2	489.281995	976.549437	1.5227	0.00074503	-1.6851	-0.00082448	-0.1624	-7.9458E-05	489.2810118435781	128.83	1.0391	128.6	128.38	129.42	-0.22697					35	20	3	0	0	0	0.59983	1	12637	12637		31.955	2.1133	1	48216			14219	5697	11563	11579	15660	15660					0.060223853766501634
GLFALPFGR	9	Unmodified	_GLFALPFGR_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;TRIP12-MFI2|1|fusion	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.2828063964844	2	489.281995	976.549437	2.5921	0.0012683	-2.5916	-0.001268	0.00054077	2.6459E-07	489.2805736268781	130.23	1.0326	128.75	128.46	129.5	-1.478					38	20	3	0	0	0	0.50066	2	12512	12488;12512		42.474	7.7602	1	73183			14220	5697	11563	11579	15661;15662	15662					0.060223853766501634
GLFALPFGR	9	Unmodified	_GLFALPFGR_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;TRIP12-MFI2|1|fusion	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MATCH	OvCa9_classI_Rep3	3		2	489.281995	976.549437	0.094053	4.6018E-05	-0.078108	-3.8217E-05	0.015945	7.8015E-06	489.2816937185659	129.92	0.79134	128.81	128.59	129.38	-1.1121	0.088329	0.0014235	NaN	42.474	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34137			14221	5697	11563	11579							0.060223853766501634
GLFAPQFYV	9	Unmodified	_GLFAPQFYV_					0	0	0		nc|ENSG00000136603|P12757-3|SKIL;nc|ENSG00000136603|P12757-5|SKIL;ENSG00000136603|ENST00000259119|SKIL;nc|ENSG00000136603|P12757-4|SKIL;nc|ENSG00000136603|P12757-2|SKIL	nc|ENSG00000136603|P12757-3|SKIL	nc|ENSG00000136603|P12757-3|SKIL	MSMS	OvCa99_classI_Rep5	1	521.2741088867188	2	521.273835	1040.53312	NaN	NaN	NaN	NaN	NaN	NaN	NaN	150.16	1	150.16	149.66	150.66	0								0	0	0	0.16924	1	17579	17579		53.351	9.2347	1				14222	4500	11564	11580	15663	15663					0.014472594198878141
GLFGGSSKI	9	Unmodified	_GLFGGSSKI_					0	0	0		ENSG00000105402|ENST00000263354|NAPA;ENST00000593785.5_1_19:48000055-48018221:-|nuORF	ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	MULTI-MSMS	OvCa99_classI_Rep5	1	433.2437438964844	2	433.242535	864.470518	1.0069	0.00043624	1.64	0.00071053	2.6469	0.0011468	433.2431356655471	81.233	0.74229	81.233	80.871	81.613	0					41	17	4	0	0	0	0.12515	1	8353	8353		90.37	13.596	1	1150300			14223	2453	11565	11581	15664	15664					0.03286113351714448
GLFHKQVTV	9	Unmodified	_GLFHKQVTV_					0	0	0		ENSG00000133401|ENST00000438447|PDZD2;ENST00000502489.5_1_5:31983264-32077762:+|nuORF;PDZD2|p.P1120Tfs*15|1|0.25|ENSG00000133401|chr5:32074461-32074462|-/G|frameshift_variant;nc|ENSG00000133401|O15018-2|PDZD2	ENSG00000133401|ENST00000438447|PDZD2	ENSG00000133401|ENST00000438447|PDZD2	MSMS	OvCa99_classI_Rep5	1	514.799560546875	2	514.798009	1027.58147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.473	1	61.473	60.973	61.973	0								0	0	0	0.039743	1	5420	5420		82.241	7.9855	1				14224	4219	11566	11582	15665	15665					0.06877753059779934
GLFMEILN	8	Unmodified	_GLFMEILN_					0	0	0		ENST00000590127.5_1_18:44407908-44497416:-|nuORF;nc|ENSG00000078043|O75928-2|PIAS2;ENSG00000078043|ENST00000585916|PIAS2	ENST00000590127.5_1_18:44407908-44497416:-|nuORF	ENST00000590127.5_1_18:44407908-44497416:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.75555419921875	2	468.746596	935.478639	-0.10314	-4.8347E-05	3.9959	0.0018731	3.8927	0.0018247	468.7483810811025	60.351	0.656	60.351	60.116	60.772	0					32	15	3	0	0	0	0.028476	1	5234	5234		33.516	10.473	1	2053900			14225	1582	11567	11583	15666	15666					0.008319242768379809
GLFQGKTPLRK	11	Unmodified	_GLFQGKTPLRK_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	OvCa9_classI_Rep4_	4	415.5887145996094	3	415.587307	1243.74009	-0.088577	-3.6812E-05	0.33812	0.00014052	0.24954	0.00010371	415.58714074776424	58.519	1.2492	55.127	54.802	56.051	-3.392					62	24	4	0	0	0	0.50203	1	3857	3857		53.597	16.089	1	314400			14226	1789	11568	11584	15667	15667					0.12797046968057657
GLFQGKTPLRK	11	Unmodified	_GLFQGKTPLRK_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MATCH	OvCa9_classI_Rep2	2		3	415.587307	1243.74009	0.056102	2.3315E-05	0.015795	6.5643E-06	0.071897	2.9879E-05	415.5872296967386	57.791	1.2508	54.999	54.674	55.925	-2.792	-0.064014	-1.4757E-05	NaN	53.597	55	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	318770			14227	1789	11568	11584							0.12797046968057657
GLFRFVRGI	9	Unmodified	_GLFRFVRGI_					0	0	0			REV__nc|ENSG00000120049|Q9NS61-6|KCNIP2	REV__nc|ENSG00000120049|Q9NS61-6|KCNIP2	MULTI-MSMS	OvCa99_classI_Rep5	1	532.822998046875	2	532.821818	1063.62908	2.4747	0.0013186	-0.8603	-0.00045839	1.6144	0.00086018	532.8212471519973	113.46	0.45642	113.46	113.2	113.66	0					21	11	2	0	0	0	0.61208	1	12924	12924		30.504	1.3541	1	432100	+		14228	28816	11569	11585	15668	15668					0.09981452050647022
GLGALGKPNIK	11	Unmodified	_GLGALGKPNIK_					0	0	0			REV__ENSG00000187033|ENST00000335556|SAMD7	REV__ENSG00000187033|ENST00000335556|SAMD7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.3289794921875	2	534.332216	1066.64988	-0.64767	-0.00034607	0.36267	0.00019379	-0.28499	-0.00015228	534.3322558967071	60.464	0.94524	57.034	56.749	57.694	-3.43					36	18	2	0	0	0	0.025298	1	4065	4065		39.253	0	1	124980	+		14229	22626	11570	11586	15669	15669					0.11921997639637993
GLGDLKLLF	9	Unmodified	_GLGDLKLLF_					0	0	0		ENST00000506579.5_1_5:140056223-140057407:-|nuORF;nc|ENSG00000170445|P12081-3|HARS1;nc|ENSG00000170445|P12081-2|HARS1;nc|ENSG00000112855|P49590-2|HARS2;nc|ENSG00000170445|P12081-4|HARS1;ENSG00000112855|ENST00000230771|HARS2;ENSG00000170445|ENST00000504156|HARS1	ENST00000506579.5_1_5:140056223-140057407:-|nuORF	ENST00000506579.5_1_5:140056223-140057407:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	488.7331237792969	2	488.29731	974.580068	-0.22809	-0.00011137	-4.0917	-0.001998	-4.3198	-0.0021093	488.2949917379452	39.754	0.3476	37.044	36.854	37.202	-2.7097					9	6	2	0	0	0	0.027462	1	1961	1961		34.173	5.023	1	7362.9			14230	2933	11571	11587	15670	15670					0.09176118971049618
GLGHRRREK	9	Unmodified	_GLGHRRREK_					0	0	0			REV__RSBN1L-RHBDD2|1|fusion	REV__RSBN1L-RHBDD2|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.7990112304688	2	554.825955	1107.63736	1.5793	0.00087624	0.23773	0.0001319	1.817	0.0010081	554.8259547038641	67.557	1.2274	64.067	63.59	64.818	-3.4902					63	24	4	0	0	0	0.027462	1	4987	4987		45.972	15.469	1	257390	+		14231	22637	11572	11588	15671	15671					0.08784399019987177
GLGHSFFIL	9	Unmodified	_GLGHSFFIL_					0	0	0			REV__PAFAH2|p.I105F|1|0.04|ENSG00000158006|chr1:25988259-25988259|T/A|missense_variant	REV__PAFAH2|p.I105F|1|0.04|ENSG00000158006|chr1:25988259-25988259|T/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	495.7909851074219	2	495.774003	989.533452	-0.65692	-0.00032568	1.2694	0.00062931	0.61244	0.00030363	495.774613435465	75.161	0.23808	72.75	72.584	72.822	-2.4106					5	4	2	0	0	0	0.027462	1	3771	3771		25.45	0	1	12050	+		14232	29274	11573	11589	15672	15672					0.03826679139774569
GLGIGFNTINL	11	Unmodified	_GLGIGFNTINL_					0	0	0			REV__tr|A0A7D6VS97|A0A7D6VS97_9CLOTPutativehemed1biosynthesisradicalSAMproteinNirJ2OS=ClostridiumintestinaleOX=36845GN=nirJ2PE=4SV=1	REV__tr|A0A7D6VS97|A0A7D6VS97_9CLOTPutativehemed1biosynthesisradicalSAMproteinNirJ2OS=ClostridiumintestinaleOX=36845GN=nirJ2PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	559.8162231445312	2	559.813856	1117.61316	2.2471	0.001258	-0.39448	-0.00022083	1.8526	0.0010371	559.8135749692154	125.52	0.98251	125.52	125.25	126.23	0					61	22	4	0	0	0	0.4646	1	14484	14484		56.434	1.6575	1	2168600	+		14233	31481	11574	11590	15673	15673					0.05905701023084475
GLGKAMRIPL	10	Unmodified	_GLGKAMRIPL_					0	0	0			REV__nc|ENSG00000157765|O95436-2|SLC34A2	REV__nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-MSMS	OvCa99_classI_Rep5	1	528.3239135742188	2	528.323337	1054.63212	0.75461	0.00039868	0.8807	0.0004653	1.6353	0.00086397	528.3237483827097	157.74	1.8079	157.74	156.75	158.56	0					55	36	2	0	0	0	0.71192	1	18519	18519		29.15	3.6994	1	59987	+		14234	20531	11575	11591	15674	15674					0.10698959113165074
GLGKTIRQ	8	Unmodified	_GLGKTIRQ_					0	0	0			REV__ENST00000526814.5_1_10:96827199-96829036:-|nuORF	REV__ENST00000526814.5_1_10:96827199-96829036:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	436.21453857421875	2	436.769252	871.52395	-0.56489	-0.00024673	-0.0079822	-3.4864E-06	-0.57287	-0.00025021	436.7690505138013	38.846	0.44602	36.136	36.013	36.459	-2.7097					13	8	2	0	0	0	0.028476	1	1872	1872		15.642	0	1	12621	+		14235	19512	11576	11592	15675	15675					0.0830491085422409
GLGKTLQAI	9	Unmodified	_GLGKTLQAI_					0	0	0		tr|A0A7D6ZXD8|A0A7D6ZXD8_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22595PE=4SV=1	tr|A0A7D6ZXD8|A0A7D6ZXD8_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22595PE=4SV=1	tr|A0A7D6ZXD8|A0A7D6ZXD8_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22595PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	450.78009033203125	2	450.779285	899.544017	2.9425	0.0013264	-0.90018	-0.00040578	2.0423	0.00092061	450.7787607224978	75.186	0.83967	75.186	74.962	75.801	0					40	20	3	0	0	0	0.094616	1	7463	7463		98.629	0	1	4814300			14236	35875	11577	11593	15676	15676					0.09022661794165288
GLGKTLQSI	9	Unmodified	_GLGKTLQSI_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1;nc|ENSG00000095564|O14981-2|BTAF1;tr|A0A553SPU4|A0A553SPU4_NIACIDEAD/DEAHboxhelicase(Fragment)OS=NialliacirculansOX=1397GN=CEQ21_26950PE=4SV=1	ENSG00000095564|ENST00000265990|BTAF1;tr|A0A553SPU4|A0A553SPU4_NIACIDEAD/DEAHboxhelicase(Fragment)OS=NialliacirculansOX=1397GN=CEQ21_26950PE=4SV=1	ENSG00000095564|ENST00000265990|BTAF1	MULTI-MSMS	OvCa99_classI_Rep5	1	458.7779235839844	2	458.776742	915.538931	0.088338	4.0527E-05	-0.12803	-5.8736E-05	-0.03969	-1.8209E-05	458.7765651710222	72.896	0.83655	72.896	72.684	73.52	0					46	20	4	0	0	0	0.094616	1	7118	7118		98.629	0	1	5690100			14237	1932;34087	11578	11594	15677	15677					0.07778357931567825
GLGKTLQTI	9	Unmodified	_GLGKTLQTI_					0	0	0		nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5	nc|ENSG00000102038|P28370-2|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	OvCa99_classI_Rep5	1	465.7859191894531	2	465.784567	929.554582	0.13551	6.3119E-05	-0.34182	-0.00015922	-0.20631	-9.6097E-05	465.7843288048507	72.885	1.2182	72.885	72.61	73.829	0					64	30	4	0	0	0	0.012163	2	7108	7108;7138		161.9	0	1	11723000			14238	5663;2220	11579	11595	15678;15679	15678					0.08698644448600135
GLGLSLTLT	9	Unmodified	_GLGLSLTLT_					0	0	0		ENST00000481948.1_1_16:88104968-88110264:+|nuORF	ENST00000481948.1_1_16:88104968-88110264:+|nuORF	ENST00000481948.1_1_16:88104968-88110264:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	437.2748107910156	2	437.765843	873.517133	-0.53278	-0.00023323	1.6462	0.00072065	1.1134	0.00048742	437.7663178574383	70.45	0.53687	66.969	66.738	67.275	-3.4812					13	10	2	0	0	0	0.027462	1	5303	5303		29.15	6.1071	1	12070			14239	12559	11580	11596	15680	15680					0.07531553182980133
GLGPALPFRPL	11	Unmodified	_GLGPALPFRPL_					0	0	0		ENST00000564946.5_1_16:30666019-30666073:+|nuORF	ENST00000564946.5_1_16:30666019-30666073:+|nuORF	ENST00000564946.5_1_16:30666019-30666073:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	569.8013305664062	2	569.342584	1136.67061	-2.003	-0.0011404	-2.2751	-0.0012953	-4.2781	-0.0024357	569.3413363774805	38.322	0.39639	35.612	35.419	35.816	-2.7097					13	7	2	0	0	0	0.025853	1	1806	1806		27.882	6.9353	1	16480			14240	13814	11581	11597	15681	15681					0.10774588019307885
GLGPPGRSV	9	Unmodified	_GLGPPGRSV_					0	0	0		ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	420.24163818359375	2	420.240327	838.466101	-0.10989	-4.6181E-05	-0.49299	-0.00020718	-0.60289	-0.00025336	420.24025344734406	55.666	1.5598	55.666	55.273	56.833	0					102	37	6	0	0	0	0.16562	2	4543	4543;4570		82.241	15.156	1	14689000			14241	7804	11582	11598	15682;15683	15682					0.040406489287988734
GLGPPGRSV	9	Unmodified	_GLGPPGRSV_					0	0	0		ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	420.2413330078125	2	420.240327	838.466101	-0.50522	-0.00021231	0.31347	0.00013173	-0.19175	-8.0581E-05	420.2404424569066	59.122	1.9823	55.73	55.249	57.232	-3.392					65	39	2	0	0	0	0.22035	3	3915	3915;3925;3937		72.879	16.158	1	1813200			14242	7804	11582	11598	15684;15685;15686	15684					0.040406489287988734
GLGPRPAVLG	10	Unmodified	_GLGPRPAVLG_					0	0	0		ENST00000391759.5_2_19:54618744-54618972:-|nuORF	ENST00000391759.5_2_19:54618744-54618972:-|nuORF	ENST00000391759.5_2_19:54618744-54618972:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	468.7856750488281	2	468.784902	935.55525	-0.10356	-4.8546E-05	-0.27742	-0.00013005	-0.38098	-0.0001786	468.78466460477034	79.679	1.0183	76.927	76.703	77.722	-2.7514					49	20	3	0	0	0	0.49049	1	6478	6478		55.504	16.698	1	319060			14243	11205	11583	11599	15687	15687					0.08489483888320137
GLGPRPAVLG	10	Unmodified	_GLGPRPAVLG_					0	0	0		ENST00000391759.5_2_19:54618744-54618972:-|nuORF	ENST00000391759.5_2_19:54618744-54618972:-|nuORF	ENST00000391759.5_2_19:54618744-54618972:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	468.784902	935.55525	-0.00040238	-1.8863E-07	-0.05856	-2.7452E-05	-0.058963	-2.7641E-05	468.784731870396	78.764	1.3663	77.024	76.512	77.878	-1.7398	0.14309	0.0001105	NaN	55.504	60	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121870			14244	11205	11583	11599							0.08489483888320137
GLGPRPAVLG	10	Unmodified	_GLGPRPAVLG_					0	0	0		ENST00000391759.5_2_19:54618744-54618972:-|nuORF	ENST00000391759.5_2_19:54618744-54618972:-|nuORF	ENST00000391759.5_2_19:54618744-54618972:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	468.784902	935.55525	0.23543	0.00011037	-0.25526	-0.00011966	-0.019825	-9.2938E-06	468.7846557784184	79.032	1.3423	76.692	76.367	77.709	-2.3399	-0.18938	-7.3915E-05	NaN	55.504	56	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	335600			14245	11205	11583	11599							0.08489483888320137
GLGPTRAAP	9	Unmodified	_GLGPTRAAP_					0	0	0			REV__ENST00000328090.9_2_10:5726882-5726975:+|nuORF	REV__ENST00000328090.9_2_10:5726882-5726975:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	420.2411193847656	2	420.240327	838.466101	-0.10989	-4.6181E-05	-0.49299	-0.00020718	-0.60289	-0.00025336	420.24025344734406	55.666	1.5598	55.666	55.273	56.833	0					102	37	6	0	0	0	0.22961	1	4600	4600		71.296	4.8664	1	14689000	+		14246	24507	11584	11600	15688	15688					0.04040648928787505
GLGSCLWPK	9	Unmodified	_GLGSCLWPK_					0	0	0			REV__ENST00000498794.1_1_3:49053967-49054132:-|nuORF	REV__ENST00000498794.1_1_3:49053967-49054132:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.7623291015625	2	480.752213	959.489873	1.6902	0.00081255	-3.5955	-0.0017285	-1.9053	-0.00091599	480.7503266686064	91.233	0.48631	91.233	91.016	91.502	0					15	11	2	0	0	0	0.027462	1	9811	9811		38.806	12.01	1	193190	+		14247	26802	11585	11601	15689	15689					0.008507463709634067
GLGSSAHAWH	10	Unmodified	_GLGSSAHAWH_					0	0	0		ENST00000489520.2_1_12:66151931-66152630:-|nuORF	ENST00000489520.2_1_12:66151931-66152630:-|nuORF	ENST00000489520.2_1_12:66151931-66152630:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.2302856445312	2	511.743765	1021.47298	0.058063	2.9714E-05	-2.317	-0.0011857	-2.2589	-0.001156	512.2424398958545	115.87	0.24712	114.47	114.37	114.61	-1.3977					5	4	2	0	0	0	0.026939	1	10794	10794		17.365	0	1	2001.8			14248	12678	11586	11602	15690	15690					-0.03690038190643463
GLGTCCFLSVV	11	Unmodified	_GLGTCCFLSVV_					0	0	0			REV__ENSG00000185385|ENST00000641113|OR7A17	REV__ENSG00000185385|ENST00000641113|OR7A17	MULTI-MSMS	OvCa99_classI_Rep5	1	549.7703247070312	2	549.769745	1097.52494	1.6853	0.00092654	0.40741	0.00022398	2.0927	0.0011505	549.7697116491607	128.21	0.93423	128.21	127.95	128.88	0					36	19	2	0	0	0	0.28332	1	14844	14844		69.628	8.6557	1	435930	+		14249	22498	11587	11603	15691	15691					-0.019923788833921208
GLGVLPDGQS	10	Unmodified	_GLGVLPDGQS_					0	0	0		ENSG00000124313|ENST00000642864|IQSEC2	ENSG00000124313|ENST00000642864|IQSEC2	ENSG00000124313|ENST00000642864|IQSEC2	MULTI-MSMS	OvCa9_classI_Rep2	2	471.7484130859375	2	471.748182	941.481811	-0.87595	-0.00041323	0.52109	0.00024582	-0.35487	-0.00016741	471.7482986041781	116.14	1.3366	116.03	115.69	117.02	-0.11777					59	26	3	0	0	0	0.69986	1	11112	11112		30.504	1.3541	1	260110			14250	3646	11588	11604	15692	15692					0.008728906551937143
GLGWGRHSRA	10	Unmodified	_GLGWGRHSRA_					0	0	0		ENST00000467278.5_1_1:1234109-1234328:-|nuORF	ENST00000467278.5_1_1:1234109-1234328:-|nuORF	ENST00000467278.5_1_1:1234109-1234328:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	548.3350830078125	2	548.791581	1095.56861	-0.66333	-0.00036403	-1.5349	-0.00084232	-2.1982	-0.0012063	548.7909735208401	49.276	0.69134	46.516	46.226	46.918	-2.7603					19	13	2	0	0	0	0.026606	1	3125	3125		44.377	10.862	1	36990			14251	12308	11589	11605	15693	15693					0.02464734720274464
GLHEQYTL	8	Unmodified	_GLHEQYTL_					0	0	0			REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	MULTI-SECPEP	OvCa9_classI_Rep2	2	481.29559326171875	2	480.742899	959.471246	0.45963	0.00022096	-0.26616	-0.00012795	0.19347	9.3011E-05	480.74247340875917	92.129	0.89385	90.894	90.484	91.378	-1.2355					29	16	2	0	0	0	0.028476	1	8191	8191		37.159	4.3467	1	27336	+		14252	19085	11590	11606	15694	15694					-0.010110919992371237
GLHKQVFH	8	Unmodified	_GLHKQVFH_					0	0	0		nc|ENSG00000144712|O75155-2|CAND2;ENSG00000144712|ENST00000456430|CAND2	nc|ENSG00000144712|O75155-2|CAND2	nc|ENSG00000144712|O75155-2|CAND2	MULTI-MSMS	OvCa99_classI_Rep5	1	483.2712707519531	2	483.269419	964.524284	0.077285	3.7349E-05	-0.56931	-0.00027513	-0.49203	-0.00023778	483.2690851765541	66.601	0.52857	66.601	66.328	66.857	0					39	12	5	0	0	0	0.73288	1	6206	6206		35.201	4.6971	1	2898900			14253	5176	11591	11607	15695	15695					0.04060330574088766
GLHQGLRR	8	Unmodified	_GLHQGLRR_					0	0	0		ENST00000528024.1_1_11:703038-703823:+|nuORF	ENST00000528024.1_1_11:703038-703823:+|nuORF	ENST00000528024.1_1_11:703038-703823:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	467.7894287109375	2	468.777942	935.541332	-0.69712	-0.0003268	3.5354	0.0016573	2.8382	0.0013305	468.7795059446595	45.239	1.5127	42.201	41.919	43.432	-3.0385					73	28	5	0	0	0	0.028476	1	2339	2339		12.207	0	1	369400			14254	13247	11592	11608	15696	15696					0.07098251179888848
GLHRSKLSI	9	Unmodified	_GLHRSKLSI_					0	0	0			REV__tr|A0A7D6VQX8|A0A7D6VQX8_9CLOTCobyrinatea,c-diamidesynthaseOS=ClostridiumintestinaleOX=36845GN=cbiAPE=3SV=1	REV__tr|A0A7D6VQX8|A0A7D6VQX8_9CLOTCobyrinatea,c-diamidesynthaseOS=ClostridiumintestinaleOX=36845GN=cbiAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.78619384765625	2	505.808908	1009.60326	-0.83897	-0.00042436	-0.12157	-6.1492E-05	-0.96054	-0.00048585	505.80875869727646	74.191	1.4813	70.96	70.579	72.061	-3.2308					53	30	2	0	0	0	0.027462	1	5878	5878		30.504	1.3541	1	633360	+		14255	31367	11593	11609	15697	15697					0.098845578083683
GLHSALIVIAG	11	Unmodified	_GLHSALIVIAG_					0	0	0			REV__tr|A0A553SJ39|A0A553SJ39_NIACIPhosphoglyceratekinaseOS=NialliacirculansOX=1397GN=pgkPE=3SV=1	REV__tr|A0A553SJ39|A0A553SJ39_NIACIPhosphoglyceratekinaseOS=NialliacirculansOX=1397GN=pgkPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.8197631835938	2	525.818941	1049.62333	-0.89486	-0.00047053	0.16362	8.6035E-05	-0.73124	-0.0003845	525.8188740030467	94.503	1.5479	92.035	91.714	93.262	-2.4685					63	30	4	0	0	0	0.62497	1	8310	8310		42.396	0.96952	1	733180	+		14256	29961	11594	11610	15698	15698					0.10050308748327552
GLIAVVIDDK	10	Unmodified	_GLIAVVIDDK_					0	0	0			REV__KCNH7|p.Q1048Pfs*5|1|0.11|ENSG00000184611|chr2:162373653-162373654|-/T|frameshift_variant	REV__KCNH7|p.Q1048Pfs*5|1|0.11|ENSG00000184611|chr2:162373653-162373654|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	521.8125610351562	2	521.810782	1041.60701	0.66684	0.00034797	3.6814	0.001921	4.3482	0.002269	521.8125550496435	68.201	4.7433	65.386	65.063	69.806	-2.8144					153	94	3	0	0	0	0.6349	1	2934	2934		37.812	9.9293	1	529900	+		14257	22442	11595	11611	15699	15699					0.0878718279154782
GLIDHQTYL	9	Unmodified	_GLIDHQTYL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	OvCa99_classI_Rep5	1	530.2799682617188	2	530.277106	1058.53966	1.9848	0.0010525	-0.17695	-9.3833E-05	1.8079	0.00095867	530.2769572639434	91.987	1.0523	91.987	91.582	92.635	0					69	24	4	0	0	0	0.1944	1	9910	9910		77.318	0.54344	1	31505000			14258	7740	11596	11612	15700	15700					0.012731525806202626
GLIDKVNEL	9	Unmodified	_GLIDKVNEL_					0	0	0		ENSG00000100883|ENST00000216774|SRP54;nc|ENSG00000100883|P61011-2|SRP54	ENSG00000100883|ENST00000216774|SRP54	ENSG00000100883|ENST00000216774|SRP54	MULTI-MSMS	OvCa99_classI_Rep5	1	500.7879943847656	2	500.787307	999.560061	1.8388	0.00092086	3.6604	0.0018331	5.4993	0.002754	500.7872958122554	96.8	0.97971	96.8	96.543	97.522	0					58	22	6	0	0	0	0.075543	1	10626	10626		104.06	16.302	1	5115100			14259	2114	11597	11613	15701	15701					0.060263232404167866
GLIDKVNEL	9	Unmodified	_GLIDKVNEL_					0	0	0		ENSG00000100883|ENST00000216774|SRP54;nc|ENSG00000100883|P61011-2|SRP54	ENSG00000100883|ENST00000216774|SRP54	ENSG00000100883|ENST00000216774|SRP54	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.7866516113281	2	500.787307	999.560061	-1.4081	-0.00070516	2.2317	0.0011176	0.82361	0.00041245	500.78790581081677	99.938	1.2751	97.613	97.366	98.641	-2.3253					54	24	3	0	0	0	0.14445	1	8934	8934		85.862	13.984	1	227720			14260	2114	11597	11613	15702	15702					0.060263232404167866
GLIDKVNEL	9	Unmodified	_GLIDKVNEL_					0	0	0		ENSG00000100883|ENST00000216774|SRP54;nc|ENSG00000100883|P61011-2|SRP54	ENSG00000100883|ENST00000216774|SRP54	ENSG00000100883|ENST00000216774|SRP54	MULTI-MATCH	OvCa9_classI_Rep3	3		2	500.787307	999.560061	-0.55977	-0.00028033	2.0157	0.0010094	1.4559	0.00072911	501.29050964593426	98.615	0.25974	96.93	96.749	97.009	-1.685	0.064966	-0.00088564	NaN	104.06	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20251			14261	2114	11597	11613							0.060263232404167866
GLIDRQVTV	9	Unmodified	_GLIDRQVTV_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OvCa9_classI_Rep3	3	500.79339599609375	2	500.792924	999.571294	-1.4055	-0.00070387	1.5395	0.00077097	0.13397	6.7092E-05	500.79349230356706	85.981	1.2544	83.761	83.486	84.74	-2.2204					63	24	4	0	0	0	0.14855	3	5090	5090;5095;5102		85.161	10.836	1	730470			14262	15005	11598	11614	15703;15704;15705	15703					0.07149145334574314
GLIDRQVTV	9	Unmodified	_GLIDRQVTV_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.7936706542969	2	500.792924	999.571294	0.79977	0.00040052	-1.8854	-0.00094417	-1.0856	-0.00054365	500.7917287612207	86.365	1.1363	83.738	83.512	84.649	-2.6269					55	22	3	0	0	0	0.31122	1	7312	7312		61.691	1.573	1	609400			14263	15005	11598	11614	15706	15706					0.07149145334574314
GLIDRQVTV	9	Unmodified	_GLIDRQVTV_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	500.792924	999.571294	-2.0696	-0.0010364	1.9983	0.0010008	-0.071237	-3.5675E-05	500.7936269363249	85.163	1.3341	83.617	83.252	84.586	-1.5462	-0.08832	0.0010225	NaN	85.161	68	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210970			14264	15005	11598	11614							0.07149145334574314
GLIDVHVHL	9	Unmodified	_GLIDVHVHL_					0	0	0		CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant;ENSG00000084774|ENST00000264705|CAD	CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	501.7913513183594	2	501.790184	1001.56581	1.9992	0.0010032	0.033456	1.6788E-05	2.0326	0.00102	501.7901122471338	100.17	0.63327	100.17	99.896	100.53	0					39	14	4	0	0	0	0.073432	1	11094	11094		105.27	36.482	1	2071400			14265	176	11599	11615	15707	15707					0.06509466542752307
GLIEILKKV	9	Unmodified	_GLIEILKKV_					0	0	0		ENSG00000105185|ENST00000590247|PDCD5	ENSG00000105185|ENST00000590247|PDCD5	ENSG00000105185|ENST00000590247|PDCD5	MULTI-MSMS	OvCa99_classI_Rep5	1	506.843017578125	2	506.841885	1011.66922	1.6786	0.00085076	0.036219	1.8357E-05	1.7148	0.00086912	506.8417794830106	106.91	1.2352	106.91	106.58	107.82	0					70	28	4	0	0	0	0.064985	2	12058	12029;12058		110.12	21.312	1	9095500			14266	2426	11600	11616	15708;15709	15709					0.16384953930571555
GLIEILKKV	9	Unmodified	_GLIEILKKV_					0	0	0		ENSG00000105185|ENST00000590247|PDCD5	ENSG00000105185|ENST00000590247|PDCD5	ENSG00000105185|ENST00000590247|PDCD5	MULTI-MSMS	OvCa9_classI_Rep3	3	506.84161376953125	2	506.841885	1011.66922	0.20474	0.00010377	-0.6526	-0.00033076	-0.44786	-0.00022699	506.8414138702273	110.62	1.4666	109.48	109.19	110.66	-1.1444					67	28	3	0	0	0	0.51865	1	8011	8011		40.778	5.1599	1	153370			14267	2426	11600	11616	15710	15710					0.16384953930571555
GLIEILKKV	9	Unmodified	_GLIEILKKV_					0	0	0		ENSG00000105185|ENST00000590247|PDCD5	ENSG00000105185|ENST00000590247|PDCD5	ENSG00000105185|ENST00000590247|PDCD5	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.841064453125	2	506.841885	1011.66922	0.23116	0.00011716	-0.78717	-0.00039897	-0.55601	-0.00028181	506.84135580831617	111.12	1.7807	109.52	109.23	111.01	-1.6011					71	33	3	0	0	0	0.37135	2	10239	10239;10252		54.776	5.3348	1	203860			14268	2426	11600	11616	15711;15712	15711					0.16384953930571555
GLIEKNIEL	9	Unmodified	_GLIEKNIEL_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1;DNMT1|p.Q503Rfs*25|1|0.04|ENSG00000130816|chr19:10154994-10154994|G/-|frameshift_variant;DNMT1|p.D701Tfs*87|1|0.11|ENSG00000130816|chr19:10151514-10151515|-/CTTGACTTGCATGGTCCTCTGTTACTTAAAGT|frameshift_variant	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	MULTI-MSMS	OvCa99_classI_Rep5	1	514.803955078125	2	514.802957	1027.59136	2.3817	0.0012261	-0.89691	-0.00046173	1.4848	0.0007644	514.8026419915006	96.076	0.79832	96.076	95.785	96.584	0					33	18	3	0	0	0	0.22035	1	10510	10510		72.879	5.3856	1	3546100			14269	4019	11601	11617	15713	15713					0.0786689627452688
GLIESSAMDS	10	Unmodified	_GLIESSAMDS_					0	0	0			REV__ENST00000517938.5_2_5:154214216-154230085:-|nuORF	REV__ENST00000517938.5_2_5:154214216-154230085:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.2781677246094	2	505.228965	1008.44338	2.2539	0.0011388	-3.9397	-0.0019904	-1.6857	-0.00085168	505.2276823080841	86.987	0.53676	86.987	86.72	87.257	0					19	12	3	0	0	0	0.026849	1	9214	9214		32.812	0	1	360660	+		14270	27023	11602	11618	15714	15714					-0.060507830416327124
GLIGVGLINV	10	Unmodified	_GLIGVGLINV_					0	0	0		nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-MSMS	OvCa99_classI_Rep5	1	477.8038635253906	2	477.80276	953.590967	1.0398	0.00049684	-0.42643	-0.00020375	0.6134	0.00029308	477.80239820991665	151.07	0.65933	151.07	150.79	151.45	0					26	12	3	0	0	0	0.31157	1	17696	17696		79.451	19.157	1	171120			14271	4796	11603	11619	15715	15715					0.11231521345325746
GLIGVGLINV	10	Unmodified	_GLIGVGLINV_					0	0	0		nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-MSMS	OvCa9_classI_Rep2	2	477.80224609375	2	477.80276	953.590967	-2.9235	-0.0013969	2.9889	0.0014281	0.065387	3.1242E-05	477.8040036126932	148.14	0.70148	147.92	147.72	148.42	-0.22697					25	13	3	0	0	0	0.58282	1	14982	14982		44.117	3.5442	1	32344			14272	4796	11603	11619	15716	15716					0.11231521345325746
GLIGVGLINV	10	Unmodified	_GLIGVGLINV_					0	0	0		nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-MSMS	OvCa9_classI_Rep3	3	477.8027648925781	2	477.80276	953.590967	-3.5159	-0.0016799	3.7563	0.0017948	0.24043	0.00011488	477.80432093906575	148.79	1.1511	147.84	147.55	148.7	-0.9512					42	22	3	0	0	0	0.50656	1	12584	12584		53.351	12.779	1	63068			14273	4796	11603	11619	15717	15717					0.11231521345325746
GLIGVGLINV	10	Unmodified	_GLIGVGLINV_					0	0	0		nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.802490234375	2	477.80276	953.590967	-2.11	-0.0010082	2.2995	0.0010987	0.18954	9.0563E-05	477.8036012396216	149.24	0.90439	147.81	147.57	148.48	-1.4344					38	18	3	0	0	0	0.45225	1	14727	14727		60.972	0.67798	1	51060			14274	4796	11603	11619	15718	15718					0.11231521345325746
GLIKVKYKDS	10	Unmodified	_GLIKVKYKDS_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54;nc|ENSG00000188596|Q96N23-2|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-MSMS	OvCa9_classI_Rep3	3	575.843505859375	2	575.845156	1149.67576	-4.018	-0.0023138	0.54994	0.00031668	-3.4681	-0.0019971	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.69073	1	11967	11967		31.53	3.6476	1	445630			14275	8482	11604	11620	15719	15719					0.10690847091291289
GLIMTAEVVL	10	Unmodified	_GLIMTAEVVL_					0	0	0			REV__ENST00000547276.5_1_12:54676362-54677673:+|nuORF	REV__ENST00000547276.5_1_12:54676362-54677673:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	523.3048095703125	2	523.301736	1044.58892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.31	1	138.82	138.32	139.32	-1.4952								0	0	0	0.14222	1	13690	13690		20.947	2.6225	1		+		14276	27433	11605	11621	15720	15720					0.06840724545213561
GLITLPRLLAS	11	Unmodified	_GLITLPRLLAS_					0	0	0		ENSG00000112195|ENST00000483722|TREML2	ENSG00000112195|ENST00000483722|TREML2	ENSG00000112195|ENST00000483722|TREML2	MULTI-MSMS	OvCa9_classI_Rep3	3	577.3678588867188	2	577.368798	1152.72304	0.41999	0.00024249	-0.64357	-0.00037158	-0.22358	-0.00012909	577.3683674642078	126.91	1.704	125.83	125.44	127.14	-1.0715					108	32	5	0	0	0	0.5804	1	9940	9940		46.457	5.0302	1	1015500			14277	2884	11606	11622	15721	15721					0.15279126362293027
GLIVHMALPR	10	Unmodified	_GLIVHMALPR_					0	0	0			REV__ENST00000487716.1_1_9:124513459-124514020:+|nuORF	REV__ENST00000487716.1_1_9:124513459-124514020:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8302001953125	2	553.828786	1105.64302	0.13278	7.3535E-05	2.4337	0.0013478	2.5664	0.0014214	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.7759	1	14168	14168		21.96	1.013	1	400120	+		14278	26607	11607	11623	15722	15722					0.09442361487435846
GLKEGIPAL	9	Unmodified	_GLKEGIPAL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;GNB2-EEF2|1|fusion	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OvCa99_classI_Rep5	1	449.2751159667969	2	449.273835	896.533118	1.6928	0.00076054	1.1761	0.00052838	2.8689	0.0012889	449.2742173313112	90.797	0.86755	90.797	90.504	91.372	0					46	21	3	0	0	0	0.047062	2	9767	9739;9767		120.62	11.897	1	2900000			14279	6826	11608	11624	15723;15724	15724					0.08071259419898524
GLKEGIPAL	9	Unmodified	_GLKEGIPAL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;GNB2-EEF2|1|fusion	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OvCa9_classI_Rep3	3	449.2740783691406	2	449.273835	896.533118	-1.1905	-0.00053486	0.12378	5.5613E-05	-1.0667	-0.00047925	449.27382557609695	92.691	1.7153	90.729	90.423	92.138	-1.9617					68	34	4	0	0	0	0.14998	1	5887	5887		84.916	2.6105	1	407140			14280	6826	11608	11624	15725	15725					0.08071259419898524
GLKEGIPAL	9	Unmodified	_GLKEGIPAL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;GNB2-EEF2|1|fusion	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	449.2745666503906	2	449.273835	896.533118	-0.25213	-0.00011328	0.07883	3.5416E-05	-0.1733	-7.7859E-05	449.2737182607347	93.211	1.2701	90.704	90.262	91.532	-2.5072					62	26	4	0	0	0	0.37135	1	8134	8134		54.776	3.4409	1	445970			14281	6826	11608	11624	15726	15726					0.08071259419898524
GLKEGIPAL	9	Unmodified	_GLKEGIPAL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;GNB2-EEF2|1|fusion	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	449.273835	896.533118	3.3778	0.0015176	-3.501	-0.0015729	-0.12319	-5.5348E-05	449.2721309209716	91.952	1.4163	90.716	90.272	91.689	-1.2355	-0.020519	-0.0021795	NaN	120.62	63	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	340690			14282	6826	11608	11624							0.08071259419898524
GLKELRKAAHR	11	Unmodified	_GLKELRKAAHR_					0	0	0		ENSG00000149742|ENST00000279178|SLC22A9;ENSG00000196600|ENST00000306494|SLC22A25	ENSG00000149742|ENST00000279178|SLC22A9;ENSG00000196600|ENST00000306494|SLC22A25	ENSG00000196600|ENST00000306494|SLC22A25	MULTI-MSMS	OvCa9_classI_Rep3	3	426.93011474609375	3	426.929955	1277.76804	2.0965	0.00089507	-0.29418	-0.00012559	1.8024	0.00076948	426.9296455594754	62.872	0.9491	59.838	59.611	60.56	-3.0339					49	18	4	0	0	0	0.69735	1	2320	2320		30.569	5.4429	1	121650			14283	5487;8633	11609	11625	15727	15727					0.14026369948146566
GLKELSEYV	9	Unmodified	_GLKELSEYV_					0	0	0		nc|ENSG00000082153|Q7L1Q6-2|BZW1;ENSG00000082153|ENST00000409600|BZW1;nc|ENSG00000082153|Q7L1Q6-4|BZW1;nc|ENSG00000082153|Q7L1Q6-3|BZW1	nc|ENSG00000082153|Q7L1Q6-2|BZW1	nc|ENSG00000082153|Q7L1Q6-2|BZW1	MULTI-MSMS	OvCa99_classI_Rep5	1	519.280517578125	2	519.279315	1036.54408	1.8779	0.00097513	0.9177	0.00047654	2.7955	0.0014517	519.2796561575	98.745	1.1101	98.745	98.419	99.529	0					61	26	4	0	0	0	0.1804	1	10889	10889		79.713	10.926	1	6808200			14284	1671	11610	11626	15728	15728					0.02726617003509091
GLKKVIQKV	9	Unmodified	_GLKKVIQKV_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	OvCa99_classI_Rep5	1	506.8475341796875	2	506.847502	1011.68045	-0.55759	-0.00028261	0.070733	3.5851E-05	-0.48685	-0.00024676	506.84748614934307	41.554	1.211	41.554	41.285	42.496	0					72	27	4	0	0	0	0.24951	1	2615	2615		68.787	2.9837	1	2806600			14285	1102	11611	11627	15729	15729					0.17507776024706345
GLKNGVPAV	9	Unmodified	_GLKNGVPAV_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	OvCa99_classI_Rep5	1	427.7593688964844	2	427.758352	853.502152	0.42162	0.00018035	-0.67233	-0.0002876	-0.25071	-0.00010724	427.7580284822098	63.552	2.1307	63.552	63.14	65.271	0					119	52	4	0	0	0	0.13154	1	5700	5700		88.643	17.265	1	26073000			14286	3523	11612	11628	15730	15730					0.06954106105649771
GLKNGVPAV	9	Unmodified	_GLKNGVPAV_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	OvCa9_classI_Rep4_	4	427.7591552734375	2	427.758352	853.502152	0.7314	0.00031286	-0.74228	-0.00031752	-0.010883	-4.6551E-06	427.7579611607295	66.908	1.7684	63.418	63.049	64.818	-3.4902					70	35	4	0	0	0	0.057208	2	4894	4882;4894		114.59	31.299	1	622930			14287	3523	11612	11628	15731;15732	15732					0.06954106105649771
GLKNGVPAV	9	Unmodified	_GLKNGVPAV_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MATCH	OvCa9_classI_Rep2	2		2	427.758352	853.502152	0.52018	0.00022251	-0.382	-0.0001634	0.13818	5.9108E-05	427.75804357021843	66.235	1.3898	63.539	62.972	64.362	-2.6958	0.03624	0.00019978	NaN	114.59	58	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181650			14288	3523	11612	11628							0.06954106105649771
GLKNIPSILVN	11	Unmodified	_GLKNIPSILVN_					0	0	0		tr|A0A7D7ABP1|A0A7D7ABP1_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16140PE=4SV=1	tr|A0A7D7ABP1|A0A7D7ABP1_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16140PE=4SV=1	tr|A0A7D7ABP1|A0A7D7ABP1_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16140PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3566284179688	2	584.358431	1166.70231	-0.5033	-0.0002941	-2.654	-0.0015509	-3.1573	-0.001845	584.3567763295431	142.42	4.015	140.98	138.81	142.83	-1.4427					242	77	4	0	0	0	0.69808	1	14035	14035		30.318	2.2362	1	214670			14289	36217	11613	11629	15733	15733					0.1256253598260173
GLKPLTRR	8	Unmodified	_GLKPLTRR_					0	0	0			REV__nc|ENSG00000129673|Q16613-2|AANAT	REV__nc|ENSG00000129673|Q16613-2|AANAT	MULTI-SECPEP	OvCa9_classI_Rep2	2	470.2666320800781	2	470.806168	939.597784	0.47506	0.00022366	-0.38945	-0.00018336	0.085605	4.0304E-05	470.80586080100153	43.428	0.69402	40.718	40.459	41.153	-2.7097					19	13	3	0	0	0	0.028476	1	2437	2437		42.474	28.699	1	30424	+		14290	28845	11614	11630	15734	15734					0.12556879016551648
GLKQLVPKVEG	11	Unmodified	_GLKQLVPKVEG_					0	0	0			REV__ENST00000534521.5_1_11:111612322-111631898:-|nuORF	REV__ENST00000534521.5_1_11:111612322-111631898:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.356689453125	2	584.358431	1166.70231	-0.5033	-0.0002941	-2.654	-0.0015509	-3.1573	-0.001845	584.3567763295431	142.42	4.015	140.98	138.81	142.83	-1.4427					242	77	4	0	0	0	0.71498	1	14004	14004		24.519	2.5593	1	214670	+		14291	19469	11615	11631	15735	15735					0.1256253598260173
GLKVLIEATK	10	Unmodified	_GLKVLIEATK_					0	0	0		nc|ENSG00000105676|Q6NXE6-2|ARMC6;ENSG00000105676|ENST00000535612|ARMC6	nc|ENSG00000105676|Q6NXE6-2|ARMC6	nc|ENSG00000105676|Q6NXE6-2|ARMC6	MULTI-MSMS	OvCa9_classI_Rep2	2	536.3404541015625	2	536.342249	1070.66995	-1.7182	-0.00092153	-0.87308	-0.00046827	-2.5913	-0.0013898	536.341630118672	49.028	1.1881	46.267	45.829	47.017	-2.7603					49	23	3	0	0	0	0.79917	1	3091	3091		19.104	3.4617	1	119790			14292	2488	11616	11632	15736	15736					0.13743748579599924
GLKYKITSIKQ	11	Unmodified	_GLKYKITSIKQ_					0	0	0		tr|A0A7D6VZB4|A0A7D6VZB4_9CLOTHDODdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18985PE=4SV=1	tr|A0A7D6VZB4|A0A7D6VZB4_9CLOTHDODdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18985PE=4SV=1	tr|A0A7D6VZB4|A0A7D6VZB4_9CLOTHDODdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18985PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	426.9305419921875	3	426.930851	1277.77072	2.0965	0.00089507	-2.3908	-0.0010207	-0.29428	-0.00012564	426.9296455594754	62.872	0.9491	59.838	59.611	60.56	-3.0339					49	18	4	0	0	0	0.68391	1	2326	2326		35.178	9.2865	1	121650			14293	35356	11617	11633	15737	15737					0.14294780562454434
GLLAGDRLVEV	11	Unmodified	_GLLAGDRLVEV_					0	0	0		ENSG00000109062|ENST00000262613|NHERF1	ENSG00000109062|ENST00000262613|NHERF1	ENSG00000109062|ENST00000262613|NHERF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	571.3331909179688	2	571.332413	1140.65027	0.77596	0.00044333	-1.0245	-0.00058531	-0.24851	-0.00014198	571.3316476251325	110.03	1.3682	108.43	108.12	109.49	-1.6011					58	25	3	0	0	0	0.54114	1	10115	10115		50.034	14.881	1	209780			14294	2692	11618	11634	15738	15738					0.08557372568861865
GLLAGDRLVEV	11	Unmodified	_GLLAGDRLVEV_					0	0	0		ENSG00000109062|ENST00000262613|NHERF1	ENSG00000109062|ENST00000262613|NHERF1	ENSG00000109062|ENST00000262613|NHERF1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	571.332413	1140.65027	-0.60545	-0.00034592	0.34937	0.0001996	-0.25609	-0.00014631	571.3324268888296	108.54	1.4339	108.32	107.98	109.41	-0.22498	-0.050044	0.00061374	NaN	50.034	61	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153410			14295	2692	11618	11634							0.08557372568861865
GLLAGDRLVEV	11	Unmodified	_GLLAGDRLVEV_					0	0	0		ENSG00000109062|ENST00000262613|NHERF1	ENSG00000109062|ENST00000262613|NHERF1	ENSG00000109062|ENST00000262613|NHERF1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	571.332413	1140.65027	-0.53914	-0.00030803	0.21508	0.00012288	-0.32406	-0.00018514	571.3323218024306	109.5	1.3128	108.36	108.09	109.4	-1.1444	-0.0087166	0.0004603	NaN	50.034	54	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	192000			14296	2692	11618	11634							0.08557372568861865
GLLDLPFRV	9	Unmodified	_GLLDLPFRV_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.309326171875	2	515.30821	1028.60187	1.0298	0.00053066	0.58026	0.00029901	1.61	0.00082967	515.30850393192	144.8	1.2751	144.8	144.5	145.78	0					83	26	5	0	0	0	0.026923	4	16933	16909;16933;16957;16982		138.83	39.451	1	5636300			14297	2189	11619	11635	15739;15740;15741;15742	15740					0.08870923719587154
GLLDLPFRV	9	Unmodified	_GLLDLPFRV_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	OvCa9_classI_Rep3	3	515.3078002929688	2	515.30821	1028.60187	-2.4294	-0.0012519	2.3046	0.0011876	-0.12477	-6.4294E-05	515.3093518739944	143.92	0.93915	142.93	142.64	143.57	-0.9903					43	18	3	0	0	0	0.55011	2	11991	11979;11991		37.812	8.662	1	56815			14298	2189	11619	11635	15743;15744	15744					0.08870923719587154
GLLEKIATPK	10	Unmodified	_GLLEKIATPK_					0	0	0		nc|ENSG00000197448|Q9Y2Q3-4|GSTK1;nc|ENSG00000197448|Q9Y2Q3-3|GSTK1;ENSG00000197448|ENST00000358406|GSTK1;nc|ENSG00000197448|Q9Y2Q3-2|GSTK1;ENST00000473649.1_1_7:142961996-142965927:+|nuORF	nc|ENSG00000197448|Q9Y2Q3-4|GSTK1	nc|ENSG00000197448|Q9Y2Q3-4|GSTK1	MULTI-MSMS	OvCa9_classI_Rep2	2	535.3333129882812	2	535.334424	1068.6543	-1.0828	-0.00057964	0.91386	0.00048922	-0.16891	-9.0423E-05	535.3348067354008	77.857	1.5785	76.068	75.727	77.305	-1.7894					79	30	4	0	0	0	0.05764	3	6487	6487;6491;6497		126.24	48.953	1	543810			14299	8714	11620	11636	15745;15746;15747	15745					0.12271462062540195
GLLEKIATPK	10	Unmodified	_GLLEKIATPK_					0	0	0		nc|ENSG00000197448|Q9Y2Q3-4|GSTK1;nc|ENSG00000197448|Q9Y2Q3-3|GSTK1;ENSG00000197448|ENST00000358406|GSTK1;nc|ENSG00000197448|Q9Y2Q3-2|GSTK1;ENST00000473649.1_1_7:142961996-142965927:+|nuORF	nc|ENSG00000197448|Q9Y2Q3-4|GSTK1	nc|ENSG00000197448|Q9Y2Q3-4|GSTK1	MULTI-SECPEP	OvCa9_classI_Rep3	3	535.7635498046875	2	535.334424	1068.6543	0.64999	0.00034796	-0.76378	-0.00040888	-0.11378	-6.0911E-05	535.3340171649644	78.548	1.8502	76.195	75.749	77.599	-2.3527					110	36	5	0	0	0	0.026296	1	4182	4182		120.87	64.147	1	543220			14300	8714	11620	11636	15748	15748					0.12271462062540195
GLLEKIATPK	10	Unmodified	_GLLEKIATPK_					0	0	0		nc|ENSG00000197448|Q9Y2Q3-4|GSTK1;nc|ENSG00000197448|Q9Y2Q3-3|GSTK1;ENSG00000197448|ENST00000358406|GSTK1;nc|ENSG00000197448|Q9Y2Q3-2|GSTK1;ENST00000473649.1_1_7:142961996-142965927:+|nuORF	nc|ENSG00000197448|Q9Y2Q3-4|GSTK1	nc|ENSG00000197448|Q9Y2Q3-4|GSTK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.3355712890625	2	535.334424	1068.6543	-0.99641	-0.00053341	0.45244	0.00024221	-0.54397	-0.00029121	535.3345492048683	78.904	1.6183	76.152	75.807	77.425	-2.7514					84	33	4	0	0	0	0.017847	2	6383	6383;6395		150.36	65.446	1	787910			14301	8714	11620	11636	15749;15750	15749					0.12271462062540195
GLLGLHENLE	10	Unmodified	_GLLGLHENLE_					0	0	0			REV__ENSG00000185010|ENST00000360256|F8	REV__ENSG00000185010|ENST00000360256|F8	MULTI-MSMS	OvCa9_classI_Rep3	3	547.7964477539062	2	547.795663	1093.57677	-0.21256	-0.00011644	-0.59041	-0.00032342	-0.80297	-0.00043986	547.7952386347279	107.34	1.5843	106.08	105.81	107.39	-1.267					109	30	6	0	0	0	0.49558	1	7634	7634		54.776	0	1	324320	+		14302	22469	11621	11637	15751	15751					0.03372824126358864
GLLGRALPR	9	Unmodified	_GLLGRALPR_					0	0	0		ENSG00000081791|ENST00000432126|DELE1	ENSG00000081791|ENST00000432126|DELE1	ENSG00000081791|ENST00000432126|DELE1	MULTI-MSMS	OvCa9_classI_Rep2	2	476.8059387207031	2	476.806168	951.597784	0.28578	0.00013626	-0.46686	-0.0002226	-0.18107	-8.6337E-05	476.80579878083404	40.986	1.3783	38.276	37.848	39.226	-2.7097					68	27	3	0	0	0	0.59983	1	2137	2137		31.955	6.5047	1	368580			14303	1664	11622	11638	15752	15752					0.12004879016546965
GLLGTLVQL	9	Unmodified	_GLLGTLVQL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OvCa99_classI_Rep5	1	457.29107666015625	2	457.289485	912.564418	1.0679	0.00048834	0.77666	0.00035516	1.8446	0.0008435	457.2897728071451	157.12	1.7086	157.12	156.85	158.56	0					94	34	5	0	0	0	0.0076713	3	18398	18398;18421;18446		181.81	29.172	1	2196300			14304	6867	11623	11639	15753;15754;15755	15753					0.10463832454001931
GLLGYHHLLHH	11	Unmodified	_GLLGYHHLLHH_					0	0	0			REV__ENST00000261167.6_1_12:14942052-14943608:-|nuORF	REV__ENST00000261167.6_1_12:14942052-14943608:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	432.91534423828125	3	432.903518	1295.68872	-1.1385	-0.00049287	-1.6408	-0.0007103	-2.7793	-0.0012032	432.90294077072843	54.689	0.84907	51.875	51.573	52.422	-2.8139					23	16	2	0	0	0	0.025594	1	3831	3831		41.427	13.783	1	28226	+		14305	23938	11624	11640	15756	15756					0.052707229940324396
GLLHIEGVGL	10	Unmodified	_GLLHIEGVGL_					0	0	0			REV__ENST00000573965.1_3_16:2933286-2946490:+|nuORF	REV__ENST00000573965.1_3_16:2933286-2946490:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.29730224609375	2	504.297842	1006.58113	-0.73292	-0.00036961	0.18901	9.5318E-05	-0.5439	-0.00027429	504.2978909366257	105.14	3.2976	103.13	102.58	105.88	-2.0161					166	64	4	0	0	0	0.56767	1	9509	9509		45.952	5.1738	1	823080	+		14306	27759	11625	11641	15757	15757					0.07810333339955378
GLLHVFVRV	9	Unmodified	_GLLHVFVRV_					0	0	0		nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-4|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	MULTI-MSMS	OvCa99_classI_Rep5	1	520.3246459960938	2	520.324194	1038.63383	2.0949	0.00109	-0.046063	-2.3968E-05	2.0489	0.0010661	520.3240385857998	99.375	0.81999	99.375	99.076	99.896	0					50	19	4	0	0	0	0.38529	1	10978	10978		53.351	14.545	1	2197200			14307	1524	11626	11642	15758	15758					0.11606336193426614
GLLLPTPAKLN	11	Unmodified	_GLLLPTPAKLN_					0	0	0		ENST00000414286.1_1_9:35753089-35756568:-|nuORF	ENST00000414286.1_1_9:35753089-35756568:-|nuORF	ENST00000414286.1_1_9:35753089-35756568:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	568.8540649414062	2	568.855524	1135.69649	-6.0828	-0.0034602	2.2546	0.0012825	-3.8282	-0.0021777	568.856661515311	161.9	1.6548	160.28	159.93	161.59	-1.6239					133	43	5	0	0	0	0.71789	1	16045	16045		23.523	3.5259	1	804000			14308	11576	11627	11643	15759	15759					0.1340743747093711
GLLLQRVAM	9	Unmodified	_GLLLQRVAM_					0	0	0			REV__nc|ENSG00000236438|C9JC47|FAM157A	REV__nc|ENSG00000236438|C9JC47|FAM157A	MULTI-MSMS	OvCa9_classI_Rep2	2	500.7976379394531	2	500.802237	999.589921	-3.3891	-0.0016973	-4.2517	-0.0021293	-7.6408	-0.0038265	500.79997207948645	149.12	1.1552	148.89	148.52	149.67	-0.22696					61	22	4	0	0	0	0.58665	1	15110	15110		33.516	3.0119	1	177980	+		14309	29149	11628	11644	15760	15760					0.09010983704774844
GLLMAGKINK	10	Unmodified	_GLLMAGKINK_					0	0	0			REV__tr|A0A7D6ZT74|A0A7D6ZT74_9CLOTNCS2familypermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10360PE=3SV=1	REV__tr|A0A7D6ZT74|A0A7D6ZT74_9CLOTNCS2familypermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10360PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	522.8148193359375	2	522.815344	1043.61614	1.1954	0.00062498	-3.4964	-0.001828	-2.301	-0.001203	522.8136505877889	107.08	2.4376	107.08	106.54	108.97	0					140	56	5	0	0	0	0.59703	1	12160	12160		42.396	1.618	1	119360000	+		14310	32200	11629	11645	15761	15761					0.0960725287625337
GLLPVTLGV	9	Unmodified	_GLLPVTLGV_					0	0	0			REV__ENST00000507419.5_1_5:133984116-133984272:-|nuORF	REV__ENST00000507419.5_1_5:133984116-133984272:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	434.7810363769531	2	434.778754	867.542954	0.7188	0.00031252	2.3971	0.0010422	3.1159	0.0013547	434.77970666938995	57.413	0.86438	57.413	56.744	57.609	0					42	19	3	0	0	0	0.52083	1	4778	4778		40.573	1.7665	1	1307500	+		14311	26898	11630	11646	15762	15762					0.10388447425293634
GLLPVTLGV	9	Unmodified	_GLLPVTLGV_					0	0	0			REV__ENST00000507419.5_1_5:133984116-133984272:-|nuORF	REV__ENST00000507419.5_1_5:133984116-133984272:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	434.778754	867.542954	0.7188	0.00031252	2.3971	0.0010422	3.1159	0.0013547	434.77970666938995	57.413	0.86438	57.413	56.744	57.609	0	0.046011	1.422E-05	NaN	40.573	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1307500	+		14312	26898	11630	11646							0.10388447425293634
GLLPVTLGV	9	Unmodified	_GLLPVTLGV_					0	0	0			REV__ENST00000507419.5_1_5:133984116-133984272:-|nuORF	REV__ENST00000507419.5_1_5:133984116-133984272:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	434.778754	867.542954	0.81404	0.00035393	2.3347	0.0010151	3.1487	0.001369	434.7796548901965	60.751	0.49816	57.321	57.046	57.544	-3.43	-0.046011	-4.0062E-05	NaN	40.573	25	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	335010	+		14313	26898	11630	11646							0.10388447425293634
GLLQRRGLN	9	Unmodified	_GLLQRRGLN_					0	0	0		ENST00000370562.1_1_20:60963365-60963512:+|nuORF	ENST00000370562.1_1_20:60963365-60963512:+|nuORF	ENST00000370562.1_1_20:60963365-60963512:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.2760620117188	2	513.811982	1025.60941	-0.60212	-0.00030938	2.7438	0.0014098	2.1417	0.0011004	513.8130542091877	93.983	0.66854	91.476	91.302	91.971	-2.5072					22	13	2	0	0	0	0.027462	1	8219	8219		23.042	0	1	58110			14314	10935	11631	11647	15763	15763					0.09763076039916996
GLLRQLHTA	9	Unmodified	_GLLRQLHTA_					0	0	0		ENSG00000167676|ENST00000301286|PLIN4	ENSG00000167676|ENST00000301286|PLIN4	ENSG00000167676|ENST00000301286|PLIN4	MULTI-MSMS	OvCa99_classI_Rep5	1	504.8030090332031	2	504.801083	1007.58761	-0.60458	-0.00030519	0.20708	0.00010453	-0.3975	-0.00020066	504.80101062474216	59.151	0.75494	59.151	58.892	59.647	0					40	19	3	0	0	0	0.38529	1	5072	5072		53.351	21.397	1	2610800			14315	6830	11632	11648	15764	15764					0.0841227129131994
GLLSRHKT	8	Unmodified	_GLLSRHKT_					0	0	0		nc|ENSG00000171817|Q8NDQ6-2|ZNF540;nc|ENSG00000171817|Q8NDQ6-4|ZNF540;ENST00000589285.1_1_19:38102250-38104161:+|nuORF;ENSG00000171817|ENST00000316433|ZNF540	nc|ENSG00000171817|Q8NDQ6-2|ZNF540	nc|ENSG00000171817|Q8NDQ6-2|ZNF540	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.78582763671875	2	456.274701	910.534849	0.13612	6.2106E-05	0.09106	4.1548E-05	0.22718	0.00010365	456.274526434579	47.237	1.2639	44.165	43.81	45.074	-3.0724					39	24	3	0	0	0	0.028476	1	2590	2590		15.642	0	1	267600			14316	7236	11633	11649	15765	15765					0.07600313228522282
GLLTALAALIA	11	Unmodified	_GLLTALAALIA_					0	0	0			REV__ENSG00000110628|ENST00000649076|SLC22A18	REV__ENSG00000110628|ENST00000649076|SLC22A18	MULTI-SECPEP	OvCa9_classI_Rep3	3	512.8363647460938	2	513.831517	1025.64848	-0.20229	-0.00010394	-0.70474	-0.00036212	-0.90704	-0.00046606	513.8311239908637	89.702	1.1734	87.622	87.239	88.413	-2.0805					45	22	3	0	0	0	0.025496	1	5534	5534		40.778	12.896	1	114060	+		14317	17991	11634	11650	15766	15766					0.13668363550914364
GLLTALAALIA	11	Unmodified	_GLLTALAALIA_					0	0	0			REV__ENSG00000110628|ENST00000649076|SLC22A18	REV__ENSG00000110628|ENST00000649076|SLC22A18	MULTI-MATCH	OvCa9_classI_Rep2	2		2	513.831517	1025.64848	1.8067	0.00092836	-2.9851	-0.0015338	-1.1783	-0.00060547	513.8298602394191	88.756	1.2813	87.388	86.938	88.219	-1.3676	-0.14251	-0.0014719	NaN	40.778	43	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72820	+		14318	17991	11634	11650							0.13668363550914364
GLLTFTKQTE	10	Unmodified	_GLLTFTKQTE_					0	0	0			REV__ENSG00000128833|ENST00000261839|MYO5C	REV__ENSG00000128833|ENST00000261839|MYO5C	MULTI-SECPEP	OvCa9_classI_Rep4_	4	570.294921875	2	569.311146	1136.60774	-0.74676	-0.00042514	-1.1091	-0.00063142	-1.8559	-0.0010566	569.3099177676993	44.353	0.60838	41.315	41.156	41.765	-3.0385					15	11	2	0	0	0	0.02706	1	2209	2209		37.812	6.2817	1	23584	+		14319	18872	11635	11651	15767	15767					0.044899774406076176
GLLVHAGTSV	10	Unmodified	_GLLVHAGTSV_					0	0	0			REV__ENSG00000084734|ENST00000264717|GCKR	REV__ENSG00000084734|ENST00000264717|GCKR	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.2777099609375	2	477.274367	952.53418	0.6826	0.00032579	4.1171	0.001965	4.7997	0.0022908	477.27592422713843	111.69	1.1528	110.18	109.89	111.05	-1.5111					44	21	3	0	0	0	0.64063	1	10296	10296		37.159	0.13063	1	124110	+		14320	17127	11636	11652	15768	15768					0.05601473788806288
GLMDTVKKV	9	Unmodified	_GLMDTVKKV_					0	0	0		GMEB1|p.Q354Nfs*31|1|0.1|ENSG00000162419|chr1:28714110-28714111|-/AACAATTGTAAACTGTGGCTGTTTGAGT|frameshift_variant;ENSG00000162419|ENST00000373816|GMEB1;nc|ENSG00000162419|Q9Y692|GMEB1	GMEB1|p.Q354Nfs*31|1|0.1|ENSG00000162419|chr1:28714110-28714111|-/AACAATTGTAAACTGTGGCTGTTTGAGT|frameshift_variant	GMEB1|p.Q354Nfs*31|1|0.1|ENSG00000162419|chr1:28714110-28714111|-/AACAATTGTAAACTGTGGCTGTTTGAGT|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	495.78814697265625	2	495.786253	989.557952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.099	1	72.099	71.599	72.599	0								0	0	0	0.16607	1	7004	7004		62.107	0	1				14321	6180	11637	11653	15769	15769					0.0627557123096949
GLMGYRLSP	9	Unmodified	_GLMGYRLSP_					0	0	0		ENSG00000115271|ENST00000437150|GCA;ENST00000487445.6_1_2:163200677-163215720:+|nuORF	ENSG00000115271|ENST00000437150|GCA	ENSG00000115271|ENST00000437150|GCA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.2673645019531	2	497.262945	992.511337	-0.22127	-0.00011003	-2.4524	-0.0012195	-2.6736	-0.0013295	497.26132527682745	58.949	0.35511	55.557	55.35	55.705	-3.392					10	6	2	0	0	0	0.027462	1	3921	3921		33.516	0	1	17097			14322	3079	11638	11654	15770	15770					0.014781313996763856
GLMKKAYEL	9	Unmodified	_GLMKKAYEL_					0	0	0		ENST00000559036.5_1_15:100173318-100185981:+|nuORF;ENST00000558983.5_1_15:100173318-100211695:+|nuORF;nc|ENSG00000116604|Q14814-2|MEF2D;nc|ENSG00000116604|Q14814-4|MEF2D;nc|ENSG00000116604|Q14814-5|MEF2D;nc|ENSG00000068305|Q02078|MEF2A;ENSG00000068305|ENST00000557942|MEF2A;nc|ENSG00000068305|Q02078-5|MEF2A;nc|ENSG00000068305|Q02078-3|MEF2A;nc|ENSG00000068305|Q02078-6|MEF2A;nc|ENSG00000068305|Q02078-4|MEF2A;nc|ENSG00000081189|Q06413-5|MEF2C;nc|ENSG00000116604|Q14814-3|MEF2D;ENSG00000081189|ENST00000504921|MEF2C;nc|ENSG00000116604|Q14814-6|MEF2D;nc|ENSG00000081189|Q06413-2|MEF2C;nc|ENSG00000081189|Q06413-6|MEF2C;nc|ENSG00000081189|Q06413-3|MEF2C;nc|ENSG00000081189|Q06413-4|MEF2C;ENSG00000213999|ENST00000424583|MEF2B;nc|ENSG00000213999|Q02080|MEF2B;ENSG00000116604|ENST00000348159|MEF2D	ENST00000559036.5_1_15:100173318-100185981:+|nuORF	ENST00000559036.5_1_15:100173318-100185981:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	526.7954711914062	2	526.794078	1051.5736	-0.26018	-0.00013706	-0.72186	-0.00038027	-0.98204	-0.00051733	526.7937350049979	65.13	0.95615	65.13	64.875	65.831	0					65	23	4	0	0	0	0.074342	3	5968	5940;5968;5998		104.75	0	1	40068000			14323	1388	11639	11655	15771;15772;15773	15772					0.049878577480058084
GLMMGKSVV	9	Unmodified	_GLMMGKSVV_					0	0	0			REV__nc|ENSG00000121270|Q96J66-2|ABCC11	REV__nc|ENSG00000121270|Q96J66-2|ABCC11	MULTI-MSMS	OvCa99_classI_Rep5	1	461.2477111816406	2	461.248449	920.482345	-0.022223	-1.0251E-05	-3.6365	-0.0016773	-3.6587	-0.0016876	461.2466215848541	65.125	0.87297	65.125	64.875	65.748	0					41	21	3	0	0	0	0.46377	1	5970	5970		45.952	0	1	2547600	+		14324	18534	11640	11656	15774	15774					0.01892270779046612
GLMTNWIV	8	Unmodified	_GLMTNWIV_					0	0	0		tr|A0A553STX5|A0A553STX5_NIACIS9familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_05815PE=4SV=1	tr|A0A553STX5|A0A553STX5_NIACIS9familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_05815PE=4SV=1	tr|A0A553STX5|A0A553STX5_NIACIS9familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_05815PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	467.2486572265625	2	467.246763	932.478974	0.30817	0.00014399	1.9014	0.00088842	2.2096	0.0010324	467.24774327677414	57.873	1.3235	57.873	57.609	58.932	0					69	31	5	0	0	0	0.50674	1	4877	4877		76.847	0	1	2740700			14325	34547	11641	11657	15775	15775					0.01003343996694639
GLMVPCIPHSA	11	Unmodified	_GLMVPCIPHSA_					0	0	0			REV__ENSG00000100116|ENST00000248924|GCAT	REV__ENSG00000100116|ENST00000248924|GCAT	MULTI-MSMS	OvCa99_classI_Rep5	1	562.7835693359375	2	562.783187	1123.55182	0.095671	5.3842E-05	-2.7833	-0.0015664	-2.6877	-0.0015126	562.7813133739028	24.163	0.20092	24.163	24.036	24.237	0					5	3	2	0	0	0	0.72459	1	422	422		20.947	0	1	13270	+		14326	17369	11642	11658	15776	15776					-0.005012702721842288
GLNDFIQKI	9	Unmodified	_GLNDFIQKI_					0	0	0		ENSG00000118515|ENST00000367858|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-4|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000474427.6_1_6:134495647-134495951:-|nuORF;ENST00000532021.5_1_6:134494408-134498975:-|nuORF;ENST00000532856.5_1_6:134494408-134495951:-|nuORF;ENST00000525700.1_1_6:134495091-134498975:-|nuORF;ENST00000530421.5_1_6:134495091-134495951:-|nuORF;ENST00000472859.2_1_6:134495091-134495791:-|nuORF;ENST00000534658.5_1_6:134494506-134495951:-|nuORF	ENSG00000118515|ENST00000367858|SGK1	ENSG00000118515|ENST00000367858|SGK1	MULTI-MSMS	OvCa99_classI_Rep5	1	524.296630859375	2	524.295299	1046.57605	1.5124	0.00079295	0.90863	0.00047639	2.421	0.0012693	524.2957865301821	116.57	1.6536	116.57	116.23	117.88	0					78	35	5	0	0	0	0.013371	1	13352	13352		158.07	33.48	1	13561000			14327	3313	11643	11659	15777	15777					0.05462029477325814
GLNDFIQKI	9	Unmodified	_GLNDFIQKI_					0	0	0		ENSG00000118515|ENST00000367858|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-4|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000474427.6_1_6:134495647-134495951:-|nuORF;ENST00000532021.5_1_6:134494408-134498975:-|nuORF;ENST00000532856.5_1_6:134494408-134495951:-|nuORF;ENST00000525700.1_1_6:134495091-134498975:-|nuORF;ENST00000530421.5_1_6:134495091-134495951:-|nuORF;ENST00000472859.2_1_6:134495091-134495791:-|nuORF;ENST00000534658.5_1_6:134494506-134495951:-|nuORF	ENSG00000118515|ENST00000367858|SGK1	ENSG00000118515|ENST00000367858|SGK1	MULTI-MSMS	OvCa9_classI_Rep2	2	524.2929077148438	2	524.295299	1046.57605	-0.92225	-0.00048353	1.1699	0.00061337	0.24765	0.00012984	524.2957443271708	116.92	1.684	116.79	116.47	118.15	-0.12869					60	33	4	0	0	0	0.060996	2	11181	11181;11206		112.41	19.215	1	635800			14328	3313	11643	11659	15778;15779	15778					0.05462029477325814
GLNDFIQKI	9	Unmodified	_GLNDFIQKI_					0	0	0		ENSG00000118515|ENST00000367858|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-4|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000474427.6_1_6:134495647-134495951:-|nuORF;ENST00000532021.5_1_6:134494408-134498975:-|nuORF;ENST00000532856.5_1_6:134494408-134495951:-|nuORF;ENST00000525700.1_1_6:134495091-134498975:-|nuORF;ENST00000530421.5_1_6:134495091-134495951:-|nuORF;ENST00000472859.2_1_6:134495091-134495791:-|nuORF;ENST00000534658.5_1_6:134494506-134495951:-|nuORF	ENSG00000118515|ENST00000367858|SGK1	ENSG00000118515|ENST00000367858|SGK1	MULTI-MSMS	OvCa9_classI_Rep3	3	524.2969360351562	2	524.295299	1046.57605	-0.99087	-0.00051951	1.1997	0.000629	0.20884	0.00010949	524.2958937271763	117.65	1.4861	116.61	116.39	117.88	-1.0324					59	29	5	0	0	0	0.1243	4	8842	8842;8848;8854;8861		90.601	10.772	1	844470			14329	3313	11643	11659	15780;15781;15782;15783	15780					0.05462029477325814
GLNDFIQKI	9	Unmodified	_GLNDFIQKI_					0	0	0		ENSG00000118515|ENST00000367858|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-4|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000474427.6_1_6:134495647-134495951:-|nuORF;ENST00000532021.5_1_6:134494408-134498975:-|nuORF;ENST00000532856.5_1_6:134494408-134495951:-|nuORF;ENST00000525700.1_1_6:134495091-134498975:-|nuORF;ENST00000530421.5_1_6:134495091-134495951:-|nuORF;ENST00000472859.2_1_6:134495091-134495791:-|nuORF;ENST00000534658.5_1_6:134494506-134495951:-|nuORF	ENSG00000118515|ENST00000367858|SGK1	ENSG00000118515|ENST00000367858|SGK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.29248046875	2	524.295299	1046.57605	-1.345	-0.00070517	1.8057	0.00094673	0.46073	0.00024156	524.2963346453154	117.9	1.5252	116.55	116.21	117.73	-1.3444					53	28	4	0	0	0	0.060996	1	11048	11048		112.41	4.3234	1	1011100			14330	3313	11643	11659	15784	15784					0.05462029477325814
GLNEEIARV	9	Unmodified	_GLNEEIARV_					0	0	0		ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	ENSG00000080986|ENST00000261597|NDC80	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.2983093261719	2	500.774731	999.534909	1.5399	0.00077116	0.65184	0.00032642	2.1918	0.0010976	500.77483249858443	78.846	0.81331	78.846	78.498	79.311	0					65	19	4	0	0	0	0.02715	1	7994	7994		101.25	0	1	5331200			14331	1647	11644	11660	15785	15785					0.035122684378507074
GLNINQSTSH	10	Unmodified	_GLNINQSTSH_					0	0	0			REV__nc|ENSG00000288602|Q96BR1-2|SGK3	REV__nc|ENSG00000288602|Q96BR1-2|SGK3	MULTI-MSMS	OvCa9_classI_Rep3	3	535.7631225585938	2	535.764894	1069.51524	0.74915	0.00040137	-4.4523	-0.0023854	-3.7031	-0.001984	535.76248491945	78.562	2.0989	76.209	75.85	77.949	-2.3527					134	41	5	0	0	0	0.32926	1	4214	4214		77.318	11.852	1	1834000	+		14332	17649	11645	11661	15786	15786					-0.016741075728987198
GLNLGKKIS	9	Unmodified	_GLNLGKKIS_					0	0	0		ENSG00000177791|ENST00000359322|MYOZ1	ENSG00000177791|ENST00000359322|MYOZ1	ENSG00000177791|ENST00000359322|MYOZ1	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.23272705078125	2	465.292559	928.570566	-0.90585	-0.00042149	1.1172	0.00051981	0.21132	9.8324E-05	465.29296828973696	34.84	0.70452	34.84	34.444	35.149	0					24	14	3	0	0	0	0.027461	1	1685	1685		40.778	6.6056	1	335450			14333	7711	11646	11662	15787	15787					0.10342350685516521
GLNLIGANR	9	Unmodified	_GLNLIGANR_					0	0	0		ENSG00000085999|ENST00000371975|RAD54L	ENSG00000085999|ENST00000371975|RAD54L	ENSG00000085999|ENST00000371975|RAD54L	MULTI-MSMS	OvCa9_classI_Rep2	2	464.27203369140625	2	464.272158	926.529764	-0.77313	-0.00035894	0.52936	0.00024577	-0.24377	-0.00011318	464.2722437694747	32.813	1.0946	30.104	29.877	30.972	-2.7097					56	21	4	0	0	0	0.6653	1	1143	1143		24.203	0	1	453740			14334	1745	11647	11663	15788	15788					0.06356009365902082
GLNLVRLG	8	Unmodified	_GLNLVRLG_					0	0	0			REV__ENST00000445067.6_1_1:111743395-111743506:+|nuORF	REV__ENST00000445067.6_1_1:111743395-111743506:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	421.2663269042969	2	421.266345	840.518136	-1.2006	-0.00050579	0.72037	0.00030347	-0.48026	-0.00020232	421.26666345540275	40.83	2.0659	37.876	37.421	39.487	-2.9541					132	39	5	0	0	0	0.73288	1	1834	1834		35.201	1.6851	1	2205900	+		14335	25884	11648	11664	15789	15789					0.0914981234257084
GLNNKTIGY	9	Unmodified	_GLNNKTIGY_					0	0	0		nc|ENSG00000133131|Q8TE76-2|MORC4;nc|ENSG00000133131|Q8TE76-3|MORC4;ENSG00000133131|ENST00000355610|MORC4	nc|ENSG00000133131|Q8TE76-2|MORC4	nc|ENSG00000133131|Q8TE76-2|MORC4	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.26544189453125	2	490.263999	978.513445	0.27513	0.00013489	-0.52685	-0.0002583	-0.25172	-0.00012341	490.26375707522965	64.091	1.8404	60.616	60.157	61.997	-3.475					89	37	4	0	0	0	0.022645	3	4550	4540;4550;4564		143.89	72.509	1	1786100			14336	4207	11649	11665	15790;15791;15792	15791					0.023328834091330464
GLNSLLPAI	9	Unmodified	_GLNSLLPAI_					0	0	0			REV__tr|A0A553SU99|A0A553SU99_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_06620PE=4SV=1	REV__tr|A0A553SU99|A0A553SU99_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_06620PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	449.2744445800781	2	449.273835	896.533118	-1.1905	-0.00053486	0.12378	5.5613E-05	-1.0667	-0.00047925	449.27382557609695	92.691	1.7153	90.729	90.423	92.138	-1.9617					68	34	4	0	0	0	0.11471	1	5893	5893		93.195	8.2799	1	407140	+		14337	31054	11650	11666	15793	15793					0.08071259419898524
GLNSTALKI	9	Unmodified	_GLNSTALKI_					0	0	0		ENSG00000103642|ENST00000261893|LACTB	ENSG00000103642|ENST00000261893|LACTB	ENSG00000103642|ENST00000261893|LACTB	MULTI-MSMS	OvCa99_classI_Rep5	1	458.7777099609375	2	458.776742	915.538931	2.334	0.0010708	1.7002	0.00078001	4.0342	0.0018508	458.77647258325504	82.62	0.68396	82.62	82.351	83.035	0					45	15	4	0	0	0	0.055627	1	8554	8554		115.49	26.851	1	2142400			14338	2334	11651	11667	15794	15794					0.07778357931567825
GLPAQQVITV	10	Unmodified	_GLPAQQVITV_					0	0	0			REV__nc|ENSG00000141568|Q01167-2|FOXK2	REV__nc|ENSG00000141568|Q01167-2|FOXK2	MULTI-MSMS	OvCa9_classI_Rep3	3	513.3032836914062	2	513.303124	1024.5917	1.1491	0.00058985	-2.003	-0.0010282	-0.8539	-0.00043831	513.3019737224882	119.91	1.5322	118.89	118.43	119.96	-1.0271					40	16	3	0	0	0	0.42962	1	9116	9116		64.207	0	1	144840	+		14339	19749	11652	11668	15795	15795					0.08038315994349432
GLPAQQVITV	10	Unmodified	_GLPAQQVITV_					0	0	0			REV__nc|ENSG00000141568|Q01167-2|FOXK2	REV__nc|ENSG00000141568|Q01167-2|FOXK2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	513.303124	1024.5917	-1.5767	-0.00080932	1.095	0.00056207	-0.48167	-0.00024724	513.3035332780943	119.32	0.98542	119.15	118.71	119.69	-0.17138	0.17971	0.0015556	NaN	64.207	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83017	+		14340	19749	11652	11668							0.08038315994349432
GLPAQQVITV	10	Unmodified	_GLPAQQVITV_					0	0	0			REV__nc|ENSG00000141568|Q01167-2|FOXK2	REV__nc|ENSG00000141568|Q01167-2|FOXK2	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	513.303124	1024.5917	1.1491	0.00058985	-2.003	-0.0010282	-0.8539	-0.00043831	513.3019737224882	119.91	1.5322	118.89	118.43	119.96	-1.0271	-0.082028	-0.0016249	NaN	64.207	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144840	+		14341	19749	11652	11668							0.08038315994349432
GLPDWTVGQVY	11	Unmodified	_GLPDWTVGQVY_					0	0	0			REV__ENSG00000159259|ENST00000314103|CHAF1B	REV__ENSG00000159259|ENST00000314103|CHAF1B	MULTI-MSMS	OvCa99_classI_Rep5	1	412.2073974609375	3	412.208273	1233.60299	1.3468	0.00055516	-3.3834	-0.0013947	-2.0366	-0.00083949	412.2067949266219	45.91	1.0952	45.91	45.667	46.762	0					68	24	6	0	0	0	0.69589	1	3199	3199		31.068	2.4914	1	2634700	+		14342	20604	11653	11669	15796	15796					-0.004469067021318551
GLPGGPPSTV	10	Unmodified	_GLPGGPPSTV_					0	0	0		ENSG00000213533|ENST00000355083|STIMATE	ENSG00000213533|ENST00000355083|STIMATE	ENSG00000213533|ENST00000355083|STIMATE	MULTI-SECPEP	OvCa9_classI_Rep2	2	440.2749938964844	2	441.239993	880.465432	0.52821	0.00023307	-0.34018	-0.0001501	0.18803	8.2966E-05	441.23972318273877	68.894	1.8375	66.274	65.474	67.312	-2.6203					116	36	6	0	0	0	0.026697	1	5437	5437		37.159	20.686	1	339430			14343	9133	11654	11670	15797	15797					0.020418094890828797
GLPKKGGAGGK	11	Unmodified	_GLPKKGGAGGK_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.2910461425781	2	485.295633	968.576714	-0.41181	-0.00019985	0.19025	9.2326E-05	-0.22156	-0.00010752	485.2956615416021	46.689	0.69469	43.979	43.696	44.39	-2.7097					21	13	2	0	0	0	0.022837	1	2788	2788		90.37	58.415	1	49299			14344	5511	11655	11671	15798	15798					0.09116868917055854
GLQQGDSGGPL	11	Unmodified	_GLQQGDSGGPL_					0	0	0		chr19:50959316-50968541|101|116.03|0.04|11.46|-|0|KLK6,KLK6|1	chr19:50959316-50968541|101|116.03|0.04|11.46|-|0|KLK6,KLK6|1	chr19:50959316-50968541|101|116.03|0.04|11.46|-|0|KLK6,KLK6|1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.257568359375	2	514.753995	1027.49344	1.3554	0.0006977	-0.38132	-0.00019628	0.97409	0.00050142	514.7537042654329	148.95	0.69043	148.95	148.67	149.36	0					24	13	2	0	0	0	0.68399	1	17463	17463		35.152	0.97948	1	57817			14345	421	11656	11672	15799	15799					-0.01920912321452306
GLQWEGAF	8	Unmodified	_GLQWEGAF_					0	0	0			REV__HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|238|1|anti-sense	REV__HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|238|1|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	454.21893310546875	2	454.21906	906.423567	-0.55773	-0.00025333	-0.27822	-0.00012637	-0.83595	-0.0003797	454.21879304935084	26.1	2.5487	26.1	25.242	27.791	0					96	50	2	0	0	0	0.67745	1	679	679		47.916	1.9636	1	111140	+		14346	28239	11657	11673	15800	15800					-0.03338746199426623
GLRAAERVL	9	Unmodified	_GLRAAERVL_					0	0	0			REV__nc|ENSG00000158793|Q86X76-4|NIT1	REV__nc|ENSG00000158793|Q86X76-4|NIT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.8017883300781	2	492.801083	983.587613	0.48653	0.00023976	-1.4785	-0.00072861	-0.99198	-0.00048885	492.8003668451582	60.85	2.2415	57.42	57.095	59.336	-3.43					111	45	3	0	0	0	0.62335	1	4215	4215		29.17	3.596	1	4101800	+		14347	28953	11658	11674	15801	15801					0.09516271291306566
GLRANLRA	8	Unmodified	_GLRANLRA_					0	0	0		nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1;NUSAP1-OIP5|3|fusion;NUSAP1-OIP5|1|fusion;NUSAP1-OIP5|5|fusion;NUSAP1-OIP5|4|fusion	nc|ENSG00000137804|Q9BXS6-4|NUSAP1	nc|ENSG00000137804|Q9BXS6-4|NUSAP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.7724914550781	2	435.767043	869.519533	-0.48307	-0.00021051	-1.9565	-0.00085257	-2.4396	-0.0010631	435.76640891344636	41.733	0.88334	38.752	38.283	39.167	-2.9804					28	16	2	0	0	0	0.028476	1	1930	1930		7.6903	0	1	50110			14348	4617	11659	11675	15802	15802					0.07955446431321889
GLRANLRA	8	Unmodified	_GLRANLRA_					0	0	0		nc|ENSG00000137804|Q9BXS6-4|NUSAP1;nc|ENSG00000137804|Q9BXS6-6|NUSAP1;nc|ENSG00000137804|Q9BXS6-3|NUSAP1;nc|ENSG00000137804|Q9BXS6-5|NUSAP1;nc|ENSG00000137804|Q9BXS6-2|NUSAP1;ENSG00000137804|ENST00000559596|NUSAP1;NUSAP1-OIP5|3|fusion;NUSAP1-OIP5|1|fusion;NUSAP1-OIP5|5|fusion;NUSAP1-OIP5|4|fusion	nc|ENSG00000137804|Q9BXS6-4|NUSAP1	nc|ENSG00000137804|Q9BXS6-4|NUSAP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	435.767043	869.519533	1.1607	0.00050578	-1.8354	-0.00079981	-0.67474	-0.00029403	435.7660203867303	41.554	0.68944	38.844	38.389	39.078	-2.7097	0.046039	3.044E-05	NaN	18.324	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10360			14349	4617	11659	11675							0.07955446431321889
GLRIRGSAD	9	Unmodified	_GLRIRGSAD_					0	0	0			REV__ENSG00000169021|ENST00000304863|UQCRFS1	REV__ENSG00000169021|ENST00000304863|UQCRFS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.7643127441406	2	472.76724	943.519927	-5.7508	-0.0027188	-2.7583	-0.0013041	-8.5092	-0.0040229	472.7659084626111	160.54	0.87077	158.93	158.67	159.54	-1.6101					33	18	3	0	0	0	0.65371	1	15864	15864		25.574	0.12388	1	45678	+		14350	21425	11660	11676	15803	15803					0.045908213605116543
GLRNSPLPARP	11	Unmodified	_GLRNSPLPARP_					0	0	0			REV__ENST00000548483.5_2_12:94288230-94288398:+|nuORF	REV__ENST00000548483.5_2_12:94288230-94288398:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3421630859375	2	589.343646	1176.67274	-5.1334	-0.0030254	3.8974	0.0022969	-1.236	-0.00072842	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.65063	1	12407	12407		40.058	3.6114	1	589610	+		14351	27442	11661	11677	15804	15804					0.09147016757128767
GLRPFSTIT	9	Unmodified	_GLRPFSTIT_					0	0	0			REV__ENSG00000001084|ENST00000650454|GCLC	REV__ENSG00000001084|ENST00000650454|GCLC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.7533874511719	2	496.282192	990.549831	-0.7891	-0.00039162	1.0134	0.00050292	0.22428	0.00011131	496.2822097400919	70.576	2.1383	67.095	66.297	68.435	-3.4812					75	43	2	0	0	0	0.027462	1	5423	5423		27.882	0	1	91604	+		14352	16359	11662	11678	15805	15805					0.054177603058633395
GLRPPRPRN	9	Unmodified	_GLRPPRPRN_					0	0	0		ENST00000570495.5_1_16:68573279-68591907:+|nuORF;ENST00000573685.5_1_16:68573279-68591907:+|nuORF;ENST00000562156.5_1_16:68573203-68591907:+|nuORF	ENST00000570495.5_1_16:68573279-68591907:+|nuORF	ENST00000570495.5_1_16:68573279-68591907:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8177490234375	2	531.817599	1061.62064	0.089047	4.7357E-05	-1.2182	-0.00064783	-1.1291	-0.00060048	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.65476	1	13670	13670		25.45	2.4077	1	263230			14353	13765	11663	11679	15806	15806					0.09229898134049108
GLRQHPLKATG	11	Unmodified	_GLRQHPLKATG_					0	0	0			REV__ENSG00000100605|ENST00000267615|ITPK1	REV__ENSG00000100605|ENST00000267615|ITPK1	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3431396484375	2	589.343646	1176.67274	-5.1334	-0.0030254	3.8974	0.0022969	-1.236	-0.00072842	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.70142	1	12510	12510		29.17	4.6509	1	589610	+		14354	17437	11664	11680	15807	15807					0.09147016757128767
GLRRRRGHS	9	Unmodified	_GLRRRRGHS_					0	0	0		ENST00000360652.6_2_20:2820944-2821295:-|nuORF	ENST00000360652.6_2_20:2820944-2821295:-|nuORF	ENST00000360652.6_2_20:2820944-2821295:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.2738647460938	2	547.823747	1093.63294	-1.2998	-0.00071207	2.9467	0.0016142	1.6468	0.00090218	547.8250984072589	42.777	0.89191	39.77	39.539	40.431	-3.0074					38	16	3	0	0	0	0.027462	1	2073	2073		24.519	8.046	1	108780			14355	10779	11665	11681	15808	15808					0.08986934597078289
GLRRRRGHS	9	Unmodified	_GLRRRRGHS_					0	0	0		ENST00000360652.6_2_20:2820944-2821295:-|nuORF	ENST00000360652.6_2_20:2820944-2821295:-|nuORF	ENST00000360652.6_2_20:2820944-2821295:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	547.823747	1093.63294	0.98477	0.00053948	0.62638	0.00034314	1.6111	0.00088262	547.8236349393519	42.405	0.59203	39.695	39.571	40.163	-2.7097	-0.037333	-0.0021907	NaN	18.262	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28711			14356	10779	11665	11681							0.08986934597078289
GLRSGQGGALI	11	Unmodified	_GLRSGQGGALI_					0	0	0			REV__tr|A0A7D7A3W5|A0A7D7A3W5_9CLOTGlucose-1-phosphateadenylyltransferaseOS=ClostridiumintestinaleOX=36845GN=glgCPE=3SV=1	REV__tr|A0A7D7A3W5|A0A7D7A3W5_9CLOTGlucose-1-phosphateadenylyltransferaseOS=ClostridiumintestinaleOX=36845GN=glgCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	514.797607421875	2	514.795998	1027.57744	0.071112	3.6608E-05	4.1694	0.0021464	4.2405	0.002183	514.7979347787733	118.11	0.991	117.07	116.74	117.73	-1.0324					53	19	4	0	0	0	0.67712	1	8881	8881		37.508	2.3075	1	180470	+		14357	32597	11666	11682	15809	15809					0.06475663566084222
GLRSVRGEP	9	Unmodified	_GLRSVRGEP_					0	0	0			REV__ENSG00000253304|ENST00000521452|TMEM200B	REV__ENSG00000253304|ENST00000521452|TMEM200B	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.3117980957031	2	485.775065	969.535577	1.0834	0.0005263	-3.3503	-0.0016275	-2.2668	-0.0011012	485.77338383522346	109.55	0.57624	109.55	109.28	109.86	0					20	12	3	0	0	0	0.027462	1	12379	12379		44.117	8.4985	1	167220	+		14358	23502	11667	11683	15810	15810					0.04959107877573388
GLRYTLRR	8	Unmodified	_GLRYTLRR_					0	0	0		ENST00000590513.2_1_17:40705339-40705789:-|nuORF	ENST00000590513.2_1_17:40705339-40705789:-|nuORF	ENST00000590513.2_1_17:40705339-40705789:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.8009033203125	2	517.814525	1033.6145	-0.59637	-0.00030881	2.5584	0.0013248	1.962	0.001016	517.815819935084	86.316	1.8197	84.096	83.636	85.455	-2.2204					87	35	3	0	0	0	0.028476	1	5110	5110		42.474	8.3019	1	814110			14359	14107	11668	11684	15811	15811					0.09903379902516463
GLSAWELIEL	10	Unmodified	_GLSAWELIEL_					0	0	0		ENSG00000133789|ENST00000318950|SWAP70;ENST00000531814.5_1_11:9685687-9746474:+|nuORF;ENST00000524817.5_1_11:9685687-9762009:+|nuORF	ENSG00000133789|ENST00000318950|SWAP70	ENSG00000133789|ENST00000318950|SWAP70	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.8084716796875	2	565.808239	1129.60193	-0.13066	-7.3931E-05	-1.8954	-0.0010724	-2.0261	-0.0011464	565.8063179682138	45.408	1.7666	42.369	41.613	43.38	-3.0385					105	33	4	0	0	0	0.53885	1	2319	2319		49.442	2.9848	1	613130			14360	4237	11669	11685	15812	15812					0.042308789289336346
GLSGGESLLV	10	Unmodified	_GLSGGESLLV_					0	0	0		ENSG00000090372|ENST00000263280|STRN4;nc|ENSG00000090372|Q9NRL3-3|STRN4;nc|ENSG00000090372|Q9NRL3-2|STRN4	ENSG00000090372|ENST00000263280|STRN4	ENSG00000090372|ENST00000263280|STRN4	MULTI-MSMS	OvCa99_classI_Rep5	1	466.2597961425781	2	466.258382	930.502212	2.3551	0.0010981	-0.74516	-0.00034744	1.6099	0.00075064	466.2581348027539	76.221	0.52434	76.221	75.956	76.48	0					22	12	3	0	0	0	0.50656	1	7634	7634		53.351	7.3792	1	888860			14361	1836	11670	11686	15813	15813					0.03418061315005616
GLSIMVSGKL	10	Unmodified	_GLSIMVSGKL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.2696228027344	2	502.794078	1003.5736	-1.1141	-0.00056017	1.1484	0.0005774	0.034259	1.7225E-05	502.79267713773976	91.867	1.9152	89.325	89.061	90.976	-2.5425					92	37	5	0	0	0	0.026849	1	8091	8091		32.812	7.2384	1	215690			14362	3119	11671	11687	15814	15814					0.07195857748024537
GLSIMVSGKL	10	Unmodified	_GLSIMVSGKL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	502.794078	1003.5736	0.93873	0.00047199	-1.2189	-0.00061286	-0.28018	-0.00014087	502.79165985908554	90.602	2.1792	89.3	89.028	91.207	-1.302	-0.0055967	-0.001149	NaN	31.53	102	41	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160890			14363	3119	11671	11687							0.07195857748024537
GLSIMVSGKL	10	Unmodified	_GLSIMVSGKL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MATCH	OvCa9_classI_Rep3	3		2	502.794078	1003.5736	-1.311	-0.00065918	-0.17776	-8.9376E-05	-1.4888	-0.00074856	502.79259622739403	91.316	1.4463	89.292	88.778	90.225	-2.0241	-0.013839	-0.00010199	NaN	31.53	80	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219870			14364	3119	11671	11687							0.07195857748024537
GLSLIFVWLI	10	Unmodified	_GLSLIFVWLI_					0	0	0		tr|A0A553SR03|A0A553SR03_NIACIPepSYdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00085PE=4SV=1	tr|A0A553SR03|A0A553SR03_NIACIPepSYdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00085PE=4SV=1	tr|A0A553SR03|A0A553SR03_NIACIPepSYdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00085PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	580.3545532226562	2	580.857535	1159.70052	-2.7377	-0.0015902	-1.325	-0.00076966	-4.0627	-0.0023599	580.8565741017269	108.19	2.7355	106.46	105.89	108.63	-1.7256					97	32	4	0	0	0	0.68695	1	9942	9942		31.955	1.4512	1	360850			14365	34213	11672	11688	15815	15815					0.12705526964668934
GLSLPVEHTL	10	Unmodified	_GLSLPVEHTL_					0	0	0			REV__ENSG00000137103|ENST00000643932|TMEM8B	REV__ENSG00000137103|ENST00000643932|TMEM8B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.79150390625	2	533.300581	1064.58661	-1.408	-0.00075088	0.62307	0.00033228	-0.78492	-0.0004186	533.3007089171981	106.12	0.46215	104.11	103.74	104.21	-2.0161					21	8	4	0	0	0	0.027088	1	9663	9663		26.693	0	1	102930	+		14366	19435	11673	11689	15816	15816					0.05690012131753974
GLSNSVVKV	9	Unmodified	_GLSNSVVKV_					0	0	0		nc|ENSG00000102802|Q5VYS4-2|MEDAG;ENSG00000102802|ENST00000380482|MEDAG	nc|ENSG00000102802|Q5VYS4-2|MEDAG	nc|ENSG00000102802|Q5VYS4-2|MEDAG	MULTI-MSMS	OvCa99_classI_Rep5	1	451.77056884765625	2	451.768917	901.523281	-0.18502	-8.3586E-05	0.2421	0.00010937	0.057082	2.5788E-05	451.76889753420545	70.389	0.78437	70.389	70.13	70.915	0					45	19	4	0	0	0	0.049969	2	6736	6736;6769		118.74	17.142	1	7291100			14367	2255	11674	11690	15817;15818	15817					0.06858071414524147
GLSPAPPPFL	10	Unmodified	_GLSPAPPPFL_					0	0	0		nc|ENSG00000166317|Q9H987-2|SYNPO2L;ENSG00000166317|ENST00000394810|SYNPO2L	nc|ENSG00000166317|Q9H987-2|SYNPO2L	nc|ENSG00000166317|Q9H987-2|SYNPO2L	MULTI-MSMS	OvCa9_classI_Rep2	2	498.28155517578125	2	498.28166	994.548768	0.43376	0.00021614	-0.53163	-0.0002649	-0.097869	-4.8766E-05	498.28127650436284	131.63	1.4224	131.41	131	132.42	-0.22697					82	28	4	0	0	0	0.65434	1	12955	12955		35.618	1.4457	1	388250			14368	6663	11675	11691	15819	15819					0.05127545936932165
GLSPAPPPFL	10	Unmodified	_GLSPAPPPFL_					0	0	0		nc|ENSG00000166317|Q9H987-2|SYNPO2L;ENSG00000166317|ENST00000394810|SYNPO2L	nc|ENSG00000166317|Q9H987-2|SYNPO2L	nc|ENSG00000166317|Q9H987-2|SYNPO2L	MULTI-MSMS	OvCa9_classI_Rep3	3	498.2811584472656	2	498.28166	994.548768	-0.41723	-0.0002079	0.29547	0.00014723	-0.12177	-6.0673E-05	498.2816571764264	132.68	1.1796	131.56	131.24	132.42	-1.1249					65	23	4	0	0	0	0.50656	1	10674	10674		53.351	14.545	1	310840			14369	6663	11675	11691	15820	15820					0.05127545936932165
GLSPLLQKI	9	Unmodified	_GLSPLLQKI_					0	0	0		USP46-SCFD2|2|fusion;USP46-SCFD2|3|fusion;nc|ENSG00000184178|Q8WU76-2|SCFD2;ENSG00000184178|ENST00000401642|SCFD2	USP46-SCFD2|2|fusion	USP46-SCFD2|2|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	484.8121643066406	2	484.810585	967.606617	-1.9235	-0.00093253	0.90505	0.00043878	-1.0184	-0.00049375	484.8107115493854	104.31	0.63536	104.31	104.02	104.66	0					35	14	4	0	0	0	0.015391	1	11684	11684		152.47	49.697	1	1085800			14370	8134	11676	11692	15821	15821					0.12151807862369424
GLSPSKRTH	9	Unmodified	_GLSPSKRTH_					0	0	0		ENSG00000143393|ENST00000368873|PI4KB;nc|ENSG00000143393|Q9UBF8-2|PI4KB	ENSG00000143393|ENST00000368873|PI4KB	ENSG00000143393|ENST00000368873|PI4KB	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.29168701171875	2	491.775065	981.535577	0.559	0.0002749	-1.3208	-0.00064955	-0.76183	-0.00037465	491.7754772752488	83.141	0.22523	81.542	81.46	81.685	-1.5988					6	4	2	0	0	0	0.027462	1	7103	7103		23.042	0	1	20756			14371	5050	11677	11693	15822	15822					0.044071078775687056
GLSQVAVTV	9	Unmodified	_GLSQVAVTV_					0	0	0		ENST00000438796.6_1_3:197607619-197610534:+|nuORF;nc|ENSG00000186001|Q96II8-4|LRCH3;ENSG00000186001|ENST00000425562|LRCH3	ENST00000438796.6_1_3:197607619-197610534:+|nuORF	ENST00000438796.6_1_3:197607619-197610534:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	437.2572021484375	2	437.255643	872.496732	2.9395	0.0012853	-0.57667	-0.00025215	2.3628	0.0010332	437.2553941224877	100.26	0.41808	100.26	100.03	100.44	0					19	9	3	0	0	0	0.03923	1	11114	11114		127.46	22.715	1	568770			14372	8308	11678	11694	15823	15823					0.05538382523184282
GLSSAIKQL	9	Unmodified	_GLSSAIKQL_					0	0	0		tr|A0A7D6VR34|A0A7D6VR34_9CLOTCyclic-di-AMPphosphodiesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_23900PE=3SV=1	tr|A0A7D6VR34|A0A7D6VR34_9CLOTCyclic-di-AMPphosphodiesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_23900PE=3SV=1	tr|A0A7D6VR34|A0A7D6VR34_9CLOTCyclic-di-AMPphosphodiesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_23900PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	458.7779541015625	2	458.776742	915.538931	-0.59732	-0.00027403	0.60526	0.00027768	0.0079432	3.6442E-06	458.77686977471103	66.279	0.47244	66.279	66.059	66.531	0					28	11	3	0	0	0	0.074342	1	6138	6138		104.75	0	1	2448800			14373	34891	11679	11695	15824	15824					0.07778357931567825
GLSTEGIYRV	10	Unmodified	_GLSTEGIYRV_					0	0	0		ARHGAP35|p.N1348Tfs*14|1|0.33|ENSG00000160007|chr19:46999308-46999308|C/-|frameshift_variant;ENSG00000160007|ENST00000672722|ARHGAP35;ENST00000595822.1_1_19:47440583-47491508:+|nuORF	ARHGAP35|p.N1348Tfs*14|1|0.33|ENSG00000160007|chr19:46999308-46999308|C/-|frameshift_variant	ARHGAP35|p.N1348Tfs*14|1|0.33|ENSG00000160007|chr19:46999308-46999308|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	547.7968139648438	2	547.795663	1093.57677	2.0345	0.0011145	0.24597	0.00013474	2.2804	0.0012492	547.7958948652389	84.943	0.74593	84.943	84.716	85.462	0					39	17	4	0	0	0	0.36605	1	8887	8887		72.879	14.649	1	6411200			14374	109	11680	11696	15825	15825					0.03372824126358864
GLSTEGIYRV	10	Unmodified	_GLSTEGIYRV_					0	0	0		ARHGAP35|p.N1348Tfs*14|1|0.33|ENSG00000160007|chr19:46999308-46999308|C/-|frameshift_variant;ENSG00000160007|ENST00000672722|ARHGAP35;ENST00000595822.1_1_19:47440583-47491508:+|nuORF	ARHGAP35|p.N1348Tfs*14|1|0.33|ENSG00000160007|chr19:46999308-46999308|C/-|frameshift_variant	ARHGAP35|p.N1348Tfs*14|1|0.33|ENSG00000160007|chr19:46999308-46999308|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.7960815429688	2	547.795663	1093.57677	-0.48371	-0.00026498	-0.11712	-6.4158E-05	-0.60084	-0.00032914	547.795416446222	87.035	1.6556	84.408	84.152	85.808	-2.6269					63	32	3	0	0	0	0.48398	1	7384	7384		56.434	6.9922	1	336710			14375	109	11680	11696	15826	15826					0.03372824126358864
GLSTEGIYRV	10	Unmodified	_GLSTEGIYRV_					0	0	0		ARHGAP35|p.N1348Tfs*14|1|0.33|ENSG00000160007|chr19:46999308-46999308|C/-|frameshift_variant;ENSG00000160007|ENST00000672722|ARHGAP35;ENST00000595822.1_1_19:47440583-47491508:+|nuORF	ARHGAP35|p.N1348Tfs*14|1|0.33|ENSG00000160007|chr19:46999308-46999308|C/-|frameshift_variant	ARHGAP35|p.N1348Tfs*14|1|0.33|ENSG00000160007|chr19:46999308-46999308|C/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	547.795663	1093.57677	-0.6231	-0.00034133	0.16235	8.8933E-05	-0.46075	-0.0002524	547.795546026709	86.008	1.6832	84.518	83.85	85.534	-1.4906	0.050221	-0.00055854	NaN	56.434	53	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186370			14376	109	11680	11696							0.03372824126358864
GLSTEGIYRV	10	Unmodified	_GLSTEGIYRV_					0	0	0		ARHGAP35|p.N1348Tfs*14|1|0.33|ENSG00000160007|chr19:46999308-46999308|C/-|frameshift_variant;ENSG00000160007|ENST00000672722|ARHGAP35;ENST00000595822.1_1_19:47440583-47491508:+|nuORF	ARHGAP35|p.N1348Tfs*14|1|0.33|ENSG00000160007|chr19:46999308-46999308|C/-|frameshift_variant	ARHGAP35|p.N1348Tfs*14|1|0.33|ENSG00000160007|chr19:46999308-46999308|C/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	547.795663	1093.57677	-1.5615	-0.0008554	1.2637	0.00069226	-0.29782	-0.00016314	547.796244107889	86.654	1.4736	84.477	84.18	85.654	-2.1768	0.0092733	0.00064811	NaN	56.434	57	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	397960			14377	109	11680	11696							0.03372824126358864
GLSVVTAR	8	Unmodified	_GLSVVTAR_					0	0	0		ENST00000460343.5_1_3:53268946-53269411:-|nuORF;ENST00000487660.1_1_3:53268946-53276200:-|nuORF	ENST00000460343.5_1_3:53268946-53269411:-|nuORF	ENST00000460343.5_1_3:53268946-53269411:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.54913330078125	2	401.742702	801.470852	1.4047	0.00056434	-0.59075	-0.00023733	0.81398	0.00032701	401.7422601562447	46.785	0.74868	46.785	46.545	47.294	0					32	16	4	0	0	0	0.028476	1	3317	3317		55.504	7.5886	1	666630			14378	12151	11681	11697	15827	15827					0.06217533071571779
GLSWRRSRRRR	11	Unmodified	_GLSWRRSRRRR_					0	0	0		ENST00000462274.1_1_21:38739279-38845117:+|nuORF	ENST00000462274.1_1_21:38739279-38845117:+|nuORF	ENST00000462274.1_1_21:38739279-38845117:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	495.9581298828125	3	495.962653	1484.86613	-4.8163	-0.0023887	-3.2411	-0.0016075	-8.0574	-0.0039962	495.96094978154576	162.14	1.4092	161.91	160.94	162.35	-0.22696					77	27	3	0	0	0	0.72548	1	16554	16554		9.2118	0.80454	1	83644			14379	12198	11682	11698	15828	15828					0.14308991316715947
GLTDNIHLV	9	Unmodified	_GLTDNIHLV_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MULTI-MSMS	OvCa99_classI_Rep5	1	491.27301025390625	2	491.271824	980.529095	2.8771	0.0014134	-0.3498	-0.00017185	2.5273	0.0012416	491.27144003349537	102.41	0.59563	102.41	102.12	102.72	0					29	13	3	0	0	0	0.068524	1	11416	11416		108.09	25.782	1	1251600			14380	2201	11683	11699	15829	15829					0.038051699261814065
GLTDNIHLV	9	Unmodified	_GLTDNIHLV_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	491.271824	980.529095	-0.26293	-0.00012917	0.49786	0.00024459	0.23493	0.00011542	491.2718886055729	103.43	1.0362	102.75	102.38	103.41	-0.68459	0.10933	0.00059806	NaN	108.09	34	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83408			14381	2201	11683	11699							0.038051699261814065
GLTDNIHLV	9	Unmodified	_GLTDNIHLV_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	491.271824	980.529095	0.023127	1.1361E-05	-0.26649	-0.00013092	-0.24336	-0.00011956	491.2716341025364	104.17	0.93542	102.73	102.39	103.33	-1.4347	0.095812	-0.00015295	NaN	108.09	32	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118210			14382	2201	11683	11699							0.038051699261814065
GLTDNIHLV	9	Unmodified	_GLTDNIHLV_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	491.271824	980.529095	-0.042988	-2.1119E-05	0.1129	5.5464E-05	0.069911	3.4346E-05	491.27179973390685	104.78	1.074	102.66	102.27	103.34	-2.1192	0.026741	0.00021982	NaN	108.09	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110170			14383	2201	11683	11699							0.038051699261814065
GLTDVILYH	9	Unmodified	_GLTDVILYH_					0	0	0		nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000271793|O60506-5|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-MSMS	OvCa9_classI_Rep2	2	515.7813110351562	2	515.782025	1029.5495	0.50473	0.00026033	-1.1756	-0.00060638	-0.67091	-0.00034604	515.7812471891496	111.48	1.823	111.34	110.88	112.7	-0.13961					85	36	4	0	0	0	0.014695	6	10528	10519;10523;10528;10534;10543;10555		153.88	39.171	1	456170			14384	4365	11684	11700	15830;15831;15832;15833;15834;15835	15832					0.035903405860153725
GLTDVILYH	9	Unmodified	_GLTDVILYH_					0	0	0		nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000271793|O60506-5|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-MSMS	OvCa9_classI_Rep3	3	515.78173828125	2	515.782025	1029.5495	2.4009	0.0012383	-2.9494	-0.0015212	-0.54851	-0.00028291	515.7803755436614	112.17	1.3254	111.07	110.8	112.12	-1.1038					62	26	3	0	0	0	0.014695	6	8183	8179;8183;8190;8197;8204;8210		153.88	48.616	1	552920			14385	4365	11684	11700	15836;15837;15838;15839;15840;15841	15837					0.035903405860153725
GLTDVILYH	9	Unmodified	_GLTDVILYH_					0	0	0		nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000271793|O60506-5|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7818603515625	2	515.782025	1029.5495	0.031353	1.6171E-05	-0.81249	-0.00041907	-0.78114	-0.0004029	515.7814508246681	112.58	1.3929	111.07	110.74	112.13	-1.5111					75	27	4	0	0	0	0.0078954	4	10420	10396;10407;10420;10433		180.49	79.283	1	622620			14386	4365	11684	11700	15842;15843;15844;15845	15844					0.035903405860153725
GLTEALHFV	9	Unmodified	_GLTEALHFV_					0	0	0		ENSG00000125817|ENST00000379751|CENPB	ENSG00000125817|ENST00000379751|CENPB	ENSG00000125817|ENST00000379751|CENPB	MULTI-MSMS	OvCa99_classI_Rep5	1	493.768310546875	2	493.768917	985.523281	1.5518	0.00076621	0.36391	0.00017969	1.9157	0.0009459	493.7690245452567	113.79	0.62456	113.79	113.57	114.2	0					28	13	3	0	0	0	0.13154	1	12977	12977		88.643	17.265	1	555610			14387	3739	11685	11701	15846	15846					0.029940714145254788
GLTSPSPVLT	10	Unmodified	_GLTSPSPVLT_					0	0	0			REV__ENST00000590347.5_1_19:1271297-1272439:+|nuORF	REV__ENST00000590347.5_1_19:1271297-1272439:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.2935485839844	2	486.274032	970.533512	1.8399	0.00089468	-2.1009	-0.0010216	-0.26106	-0.00012695	486.2729847606564	134.42	0.27563	134.42	134.2	134.47	0					7	5	2	0	0	0	0.027056	1	15632	15632		20.947	7.1716	1	137630	+		14388	17328	11686	11702	15847	15847					0.0470663434908829
GLTSTDLLFHL	11	Unmodified	_GLTSTDLLFHL_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF;ENST00000534785.1_1_11:65061654-65063444:+|nuORF;ENST00000533192.1_1_11:65055200-65062124:+|nuORF;EHBP1L1-POLA2|1|fusion	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MSMS	OvCa99_classI_Rep5	1	608.8342895507812	2	608.832246	1215.64994	1.7583	0.0010705	-0.73135	-0.00044527	1.027	0.00062525	608.8316283280888	138.45	0.94801	138.45	137.93	138.88	0					55	19	4	0	0	0	0.078771	1	16158	16158		101.6	41.434	1	261310			14389	995	11687	11703	15848	15848					0.05073952849011221
GLTSTDLLFHL	11	Unmodified	_GLTSTDLLFHL_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF;ENST00000534785.1_1_11:65061654-65063444:+|nuORF;ENST00000533192.1_1_11:65055200-65062124:+|nuORF;EHBP1L1-POLA2|1|fusion	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MSMS	OvCa9_classI_Rep2	2	608.8333129882812	2	608.832246	1215.64994	-0.89842	-0.00054699	0.68647	0.00041794	-0.21195	-0.00012904	608.8326383235667	136.75	0.8278	136.53	136.21	137.03	-0.22696					35	16	3	0	0	0	0.50928	1	13597	13597		52.937	16.49	1	45232			14390	995	11687	11703	15849	15849					0.05073952849011221
GLTSTDLLFHL	11	Unmodified	_GLTSTDLLFHL_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF;ENST00000534785.1_1_11:65061654-65063444:+|nuORF;ENST00000533192.1_1_11:65055200-65062124:+|nuORF;EHBP1L1-POLA2|1|fusion	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MSMS	OvCa9_classI_Rep3	3	608.8321533203125	2	608.832246	1215.64994	0.21187	0.000129	-0.20665	-0.00012581	0.0052283	3.1832E-06	608.831874040744	137.56	0.72951	136.48	136.24	136.97	-1.0858					29	14	3	0	0	0	0.64273	1	11224	11224		40.778	12.896	1	42194			14391	995	11687	11703	15850	15850					0.05073952849011221
GLTSTDLLFHL	11	Unmodified	_GLTSTDLLFHL_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF;ENST00000534785.1_1_11:65061654-65063444:+|nuORF;ENST00000533192.1_1_11:65055200-65062124:+|nuORF;EHBP1L1-POLA2|1|fusion	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MSMS	OvCa9_classI_Rep4_	4	608.8328857421875	2	608.832246	1215.64994	2.3141	0.0014089	-2.3054	-0.0014036	0.0087576	5.3319E-06	608.8307273532805	137.92	0.66716	136.4	136.12	136.79	-1.5284					33	15	3	0	0	0	0.26031	2	13412	13412;13427		71.877	27.346	1	47664			14392	995	11687	11703	15851;15852	15851					0.05073952849011221
GLVDKLQAL	9	Unmodified	_GLVDKLQAL_					0	0	0		ENST00000566284.1_1_16:57467902-57474840:-|nuORF;nc|ENSG00000005194|Q6FI81-3|CIAPIN1;ENSG00000005194|ENST00000394391|CIAPIN1	ENST00000566284.1_1_16:57467902-57474840:-|nuORF	ENST00000566284.1_1_16:57467902-57474840:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	478.7940368652344	2	478.792392	955.570232	0.066385	3.1784E-05	0.034378	1.646E-05	0.10076	4.8244E-05	478.7924220759149	105.17	0.65829	105.17	104.87	105.53	0					23	14	3	0	0	0	0.13504	1	11809	11809		87.696	15.819	1	990420			14393	848	11688	11704	15853	15853					0.0906693096563913
GLVEKVQAA	9	Unmodified	_GLVEKVQAA_					0	0	0		ENSG00000130203|ENST00000252486|APOE	ENSG00000130203|ENST00000252486|APOE	ENSG00000130203|ENST00000252486|APOE	MULTI-MSMS	OvCa99_classI_Rep5	1	457.7701721191406	2	457.768917	913.523281	-0.078903	-3.6119E-05	-0.024863	-1.1381E-05	-0.10377	-4.7501E-05	457.76871801035367	60.376	0.86367	60.376	60.079	60.943	0					39	20	3	0	0	0	0.10502	1	5268	5268		95.815	23.938	1	2090200			14394	3967	11689	11705	15854	15854					0.06306071414519465
GLVESMRAY	9	Unmodified	_GLVESMRAY_					0	0	0			REV__ENST00000389118.8_1_5:170395310-170711609:+|nuORF;REV__ENST00000519256.5_1_5:170585477-170669877:+|nuORF;REV__RANBP17|p.V862Afs*8|1|0.46|ENSG00000204764|chr5:171241086-171241108|AATGTACTCCAGGCTTTTGTCAA/-|frameshift_variant	REV__RANBP17|p.V862Afs*8|1|0.46|ENSG00000204764|chr5:171241086-171241108|AATGTACTCCAGGCTTTTGTCAA/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.6241455078125	2	513.257859	1024.50117	-0.22538	-0.00011568	0.32991	0.00016933	0.10452	5.3648E-05	513.2576310496893	66.559	1.577	63.069	62.756	64.333	-3.4902					61	31	3	0	0	0	0.027462	1	4828	4828		38.806	8.9646	1	123430	+		14395	25225;27041;23184	11690	11706	15855	15855					-0.010104763255412763
GLVHVFAAR	9	Unmodified	_GLVHVFAAR_					0	0	0			REV__ENST00000482990.1_1_2:27479185-27480240:-|nuORF	REV__ENST00000482990.1_1_2:27479185-27480240:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	485.2825012207031	2	485.285069	968.555585	-1.9489	-0.00094577	-2.4543	-0.0011911	-4.4033	-0.0021368	485.2837680529316	35.087	1.3898	32.377	32.109	33.499	-2.7097					66	27	4	0	0	0	0.57242	1	1395	1395		35.201	1.0282	1	549360	+		14396	18225	11691	11707	15856	15856					0.07004903608174118
GLVNYQISV	9	Unmodified	_GLVNYQISV_					0	0	0		ENST00000475316.5_1_7:65439511-65446985:-|nuORF;nc|ENSG00000169919|P08236-2|GUSB;ENSG00000169919|ENST00000304895|GUSB	ENST00000475316.5_1_7:65439511-65446985:-|nuORF	ENST00000475316.5_1_7:65439511-65446985:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	496.77545166015625	2	496.7742	991.533846	1.1917	0.00059203	0.50894	0.00025283	1.7007	0.00084485	496.77428321775506	119.28	0.41325	119.28	119.05	119.47	0					17	8	3	0	0	0	0.2422	1	13689	13689		69.628	21.712	1	198860			14397	7055	11692	11708	15857	15857					0.03774054068958321
GLVPHLPKN	9	Unmodified	_GLVPHLPKN_					0	0	0			REV__nc|ENSG00000124749|Q96P44-3|COL21A1	REV__nc|ENSG00000124749|Q96P44-3|COL21A1	MULTI-MSMS	OvCa9_classI_Rep3	3	487.78912353515625	2	487.792727	973.5709	-5.9707	-0.0029125	-3.5051	-0.0017098	-9.4758	-0.0046222	487.7934424937764	154.43	1.6772	153.42	152.92	154.6	-1.0076					47	37	2	0	0	0	0.6959	1	13249	13249		19.36	2.8868	1	40258	+		14398	18703	11693	11709	15858	15858					0.08305770405377189
GLVSPVEHPQ	10	Unmodified	_GLVSPVEHPQ_					0	0	0			REV__ENSG00000136274|ENST00000490531|NACAD	REV__ENSG00000136274|ENST00000490531|NACAD	MULTI-MSMS	OvCa9_classI_Rep2	2	531.7822265625	2	531.782556	1061.55056	-1.5399	-0.00081889	1.1515	0.00061235	-0.38839	-0.00020654	531.7830281716216	47.648	1.6888	44.939	44.39	46.079	-2.7097					102	33	5	0	0	0	0.46756	1	2919	2919		58.782	2.0609	1	612800	+		14399	19374	11694	11710	15859	15859					0.022245549549097632
GLVSQIPAL	9	Unmodified	_GLVSQIPAL_					0	0	0		tr|A0A7D6VPH1|A0A7D6VPH1_9CLOTFlagellarbiosynthesisproteinFlhAOS=ClostridiumintestinaleOX=36845GN=flhAPE=3SV=1	tr|A0A7D6VPH1|A0A7D6VPH1_9CLOTFlagellarbiosynthesisproteinFlhAOS=ClostridiumintestinaleOX=36845GN=flhAPE=3SV=1	tr|A0A7D6VPH1|A0A7D6VPH1_9CLOTFlagellarbiosynthesisproteinFlhAOS=ClostridiumintestinaleOX=36845GN=flhAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	449.27459716796875	2	449.273835	896.533118	-0.25213	-0.00011328	0.07883	3.5416E-05	-0.1733	-7.7859E-05	449.2737182607347	93.211	1.2701	90.704	90.262	91.532	-2.5072					62	26	4	0	0	0	0.18193	1	8108	8108		79.451	0	1	445970			14400	34769	11695	11711	15860	15860					0.08071259419898524
GLVSTGLKV	9	Unmodified	_GLVSTGLKV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OvCa99_classI_Rep5	1	437.2750244140625	2	437.273835	872.533118	3.3363	0.0014589	-0.94532	-0.00041337	2.3909	0.0010455	437.27329082566354	84.41	0.9501	84.41	84.177	85.127	0					44	22	3	0	0	0	0.030815	2	8812	8812;8845		134.81	52.506	1	4973500			14401	6826	11696	11712	15861;15862	15861					0.0917525941989652
GLVTWLVLA	9	Unmodified	_GLVTWLVLA_					0	0	0			REV__ENSG00000040608|ENST00000043402|RTN4R	REV__ENSG00000040608|ENST00000043402|RTN4R	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.2754211425781	2	486.299853	970.585153	1.1245	0.00054686	-3.0369	-0.0014769	-1.9124	-0.00092999	486.29828058824046	91.065	0.95509	91.065	90.504	91.459	0					42	23	3	0	0	0	0.027462	1	9708	9708		40.573	10.069	1	956720	+		14402	16630	11697	11713	15863	15863					0.09868422833642398
GLVVERLRRVI	11	Unmodified	_GLVVERLRRVI_					0	0	0			REV__nc|ENSG00000121236|Q9C030|TRIM6	REV__nc|ENSG00000121236|Q9C030|TRIM6	MULTI-SECPEP	OvCa9_classI_Rep2	2	437.2746276855469	3	437.285739	1308.83539	-0.21641	-9.4633E-05	0.16884	7.3833E-05	-0.047566	-2.08E-05	437.2855647961947	68.862	0.3483	66.241	65.968	66.316	-2.6203					8	6	2	0	0	0	0.025814	1	5430	5430		41.427	10.858	1	7469.5	+		14403	18533	11698	11714	15864	15864					0.19332400159123608
GLVYLAGVIA	10	Unmodified	_GLVYLAGVIA_					0	0	0		ENSG00000158315|ENST00000372990|RHBDL2	ENSG00000158315|ENST00000372990|RHBDL2	ENSG00000158315|ENST00000372990|RHBDL2	MULTI-MSMS	OvCa99_classI_Rep5	1	488.29925537109375	2	488.29731	974.580068	1.3918	0.00067961	0.89235	0.00043573	2.2841	0.0011153	488.2975717653619	138.3	1.9236	138.3	137.78	139.7	0					90	40	3	0	0	0	0.5794	1	16133	16133		44.531	5.7249	1	289030			14404	5946	11699	11715	15865	15865					0.09176118971026881
GLWGHALLL	9	Unmodified	_GLWGHALLL_					0	0	0		nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	MULTI-MSMS	OvCa99_classI_Rep5	1	490.2901611328125	2	490.28982	978.565087	1.7601	0.00086294	0.11284	5.5322E-05	1.8729	0.00091826	490.28970370352715	128.67	0.98233	128.67	128.42	129.4	0					50	20	4	0	0	0	0.53728	1	14900	14900		39.021	3.8208	1	878810			14405	5408	11700	11716	15866	15866					0.07494671893698523
GLWGPEEEPHL	11	Unmodified	_GLWGPEEEPHL_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MSMS	OvCa99_classI_Rep5	1	632.3054809570312	2	632.303852	1262.59315	1.5232	0.0009631	0.91257	0.00057702	2.4357	0.0015401	632.3039960310131	109.54	0.75877	109.54	109.28	110.04	0					40	16	4	0	0	0	0.46066	1	12415	12415		56.721	1.9987	1	1118300			14406	15389	11701	11717	15867	15867					-0.02764094707526965
GLWGPEEEPHL	11	Unmodified	_GLWGPEEEPHL_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	632.303852	1262.59315	-0.6606	-0.0004177	0.73612	0.00046545	0.075527	4.7756E-05	632.3041570806091	109.49	0.49503	109.32	109.12	109.61	-0.17236	-0.0049786	0.00053042	NaN	56.721	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15673			14407	15389	11701	11717							-0.02764094707526965
GLWGPEEEPHL	11	Unmodified	_GLWGPEEEPHL_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MATCH	OvCa9_classI_Rep3	3		2	632.303852	1262.59315	0.65783	0.00041595	-0.22427	-0.00014181	0.43356	0.00027414	632.3032590418142	110.34	0.4206	109.2	108.98	109.4	-1.1444	-0.12389	-0.0006841	NaN	56.721	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19275			14408	15389	11701	11717							-0.02764094707526965
GLWGPEEEPHL	11	Unmodified	_GLWGPEEEPHL_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	632.303852	1262.59315	0.87485	0.00055317	-1.4383	-0.00090944	-0.56345	-0.00035627	632.3023779379001	110.83	0.63092	109.23	108.91	109.54	-1.6011	-0.0881	-0.0022194	NaN	56.721	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21156			14409	15389	11701	11717							-0.02764094707526965
GLWNAQRQLA	10	Unmodified	_GLWNAQRQLA_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;HECTD4|p.P3258Rfs*65|1|0.06|ENSG00000173064|chr12:112184791-112184792|-/C|frameshift_variant;HECTD4|p.R2204Ffs*29|1|0.3|ENSG00000173064|chr12:112219449-112219450|-/TGTTATGAAACTGACTGTATCTCTAAACTTAAAA|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-5|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-SECPEP	OvCa9_classI_Rep3	3	578.8580322265625	2	578.814722	1155.61489	-1.1864	-0.00068668	3.8028	0.0022011	2.6164	0.0015144	579.8209885651314	74.211	0.79073	71.724	71.324	72.115	-2.4873					25	15	3	0	0	0	0.026915	1	3705	3705		27.882	0	1	65126			14410	7345	11702	11718	15868	15868					0.04330754831721606
GLWSDALRI	9	Unmodified	_GLWSDALRI_					0	0	0		IFT172|p.R1483Sfs*10|1|0.16|ENSG00000138002|chr2:27447902-27447903|-/ACTGCAAGCTCCGCTTCCCGGGTTCA|frameshift_variant;nc|ENSG00000138002|Q9UG01-2|IFT172;ENSG00000138002|ENST00000260570|IFT172	IFT172|p.R1483Sfs*10|1|0.16|ENSG00000138002|chr2:27447902-27447903|-/ACTGCAAGCTCCGCTTCCCGGGTTCA|frameshift_variant	IFT172|p.R1483Sfs*10|1|0.16|ENSG00000138002|chr2:27447902-27447903|-/ACTGCAAGCTCCGCTTCCCGGGTTCA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	515.78857421875	2	515.787641	1029.56073	1.1183	0.00057678	0.65195	0.00033627	1.7702	0.00091305	515.7877028938698	124.77	0.51129	124.77	124.51	125.02	0					27	10	4	0	0	0	0.13504	1	14413	14413		87.696	21.267	1	491870			14411	4645	11703	11719	15869	15869					0.04713162680127425
GLYEFFRAK	9	Unmodified	_GLYEFFRAK_					0	0	0		ENSG00000085872|ENST00000546361|CHERP	ENSG00000085872|ENST00000546361|CHERP	ENSG00000085872|ENST00000546361|CHERP	MULTI-MSMS	OvCa9_classI_Rep2	2	565.8025512695312	2	565.803291	1129.59203	-0.024278	-1.3737E-05	-0.17645	-9.9834E-05	-0.20072	-0.00011357	565.8031405339378	93.321	1.3886	92.153	91.806	93.195	-1.168					55	26	3	0	0	0	0.1804	3	8322	8322;8327;8334		79.713	30.271	1	449900			14412	1743	11704	11720	15870;15871;15872	15870					0.032417357142321634
GLYEFFRAK	9	Unmodified	_GLYEFFRAK_					0	0	0		ENSG00000085872|ENST00000546361|CHERP	ENSG00000085872|ENST00000546361|CHERP	ENSG00000085872|ENST00000546361|CHERP	MULTI-MSMS	OvCa9_classI_Rep3	3	565.8038330078125	2	565.803291	1129.59203	-0.93053	-0.0005265	0.72552	0.0004105	-0.20501	-0.000116	565.8036309840322	94.237	1.5676	92.342	91.643	93.211	-1.8956					57	23	4	0	0	0	0.094616	2	6079	6079;6086		98.629	31.588	1	517410			14413	1743	11704	11720	15873;15874	15873					0.032417357142321634
GLYEFFRAK	9	Unmodified	_GLYEFFRAK_					0	0	0		ENSG00000085872|ENST00000546361|CHERP	ENSG00000085872|ENST00000546361|CHERP	ENSG00000085872|ENST00000546361|CHERP	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.8041381835938	2	565.803291	1129.59203	0.33006	0.00018675	-0.7405	-0.00041898	-0.41045	-0.00023223	565.8027887845307	94.904	1.252	92.435	92.01	93.262	-2.4685					48	24	3	0	0	0	0.094616	2	8319	8319;8332		98.629	24.374	1	489770			14414	1743	11704	11720	15875;15876	15875					0.032417357142321634
GLYIASRSL	9	Unmodified	_GLYIASRSL_					0	0	0			REV__ENSG00000177464|ENST00000323040|GPR4	REV__ENSG00000177464|ENST00000323040|GPR4	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.27349853515625	2	490.282192	978.549831	1.4117	0.00069212	1.2959	0.00063538	2.7076	0.0013275	490.2828344162263	82.997	0.55449	82.997	82.865	83.419	0					15	12	2	0	0	0	0.027447	1	8657	8657		56.721	40.248	1	306370	+		14415	22008	11705	11721	15877	15877					0.05969760305856653
GLYKSIQKTLK	11	Unmodified	_GLYKSIQKTLK_					0	0	0		ENSG00000165996|ENST00000361271|HACD1;nc|ENSG00000165996|B0YJ81-2|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	MULTI-MSMS	OvCa9_classI_Rep2	2	426.9310302734375	3	426.930851	1277.77072	-1.6295	-0.00069567	1.3674	0.00058379	-0.26207	-0.00011189	426.93125297443623	61.712	1.1595	58.953	58.672	59.832	-2.7593					79	22	5	0	0	0	0.42571	1	4603	4603		59.265	31.621	1	431310			14416	6625	11706	11722	15878	15878					0.14294780562454434
GLYKSIQKTLK	11	Unmodified	_GLYKSIQKTLK_					0	0	0		ENSG00000165996|ENST00000361271|HACD1;nc|ENSG00000165996|B0YJ81-2|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	MULTI-MSMS	OvCa9_classI_Rep3	3	426.9308776855469	3	426.930851	1277.77072	2.0965	0.00089507	-2.3908	-0.0010207	-0.29428	-0.00012564	426.9296455594754	62.872	0.9491	59.838	59.611	60.56	-3.0339					49	18	4	0	0	0	0.57493	3	2313	2303;2308;2313		46.955	13.916	1	121650			14417	6625	11706	11722	15879;15880;15881	15881					0.14294780562454434
GLYKSIQKTLK	11	Unmodified	_GLYKSIQKTLK_					0	0	0		ENSG00000165996|ENST00000361271|HACD1;nc|ENSG00000165996|B0YJ81-2|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	426.930851	1277.77072	-0.081028	-3.4593E-05	-0.21459	-9.1617E-05	-0.29562	-0.00012621	426.93060808247685	62.991	1.8376	59.516	59.093	60.931	-3.475	-0.16113	0.00082832	NaN	46.955	88	37	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	428460			14418	6625	11706	11722							0.14294780562454434
GLYMFFKV	8	Unmodified	_GLYMFFKV_					0	0	0			REV__tr|A0A553SG15|A0A553SG15_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09905PE=4SV=1	REV__tr|A0A553SG15|A0A553SG15_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09905PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.808349609375	2	502.767332	1003.52011	-0.41097	-0.00020662	-0.70158	-0.00035273	-1.1126	-0.00055936	502.7668008426626	116.17	0.54505	114.8	114.6	115.14	-1.3645					13	10	2	0	0	0	0.028476	1	10828	10828		28.254	4.0515	1	13306	+		14419	29647	11707	11723	15882	15882					0.01849105036160381
GLYMFFKV	8	Unmodified	_GLYMFFKV_					0	0	0			REV__tr|A0A553SG15|A0A553SG15_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09905PE=4SV=1	REV__tr|A0A553SG15|A0A553SG15_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09905PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	502.767332	1003.52011	-0.958	-0.00048165	0.75065	0.0003774	-0.20735	-0.00010425	502.76783614702845	115.18	0.54306	115.06	114.8	115.34	-0.11777	0.16176	0.00072223	NaN	28.254	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9302.4	+		14420	29647	11707	11723							0.01849105036160381
GLYMFFKV	8	Unmodified	_GLYMFFKV_					0	0	0			REV__tr|A0A553SG15|A0A553SG15_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09905PE=4SV=1	REV__tr|A0A553SG15|A0A553SG15_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09905PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	502.767332	1003.52011	-0.85896	-0.00043186	0.48008	0.00024137	-0.37889	-0.00019049	502.7674647422431	115.88	0.39488	114.84	114.65	115.05	-1.0414	-0.060036	0.00045016	NaN	28.254	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13117	+		14421	29647	11707	11723							0.01849105036160381
GLYPAPAQP	9	Unmodified	_GLYPAPAQP_					0	0	0			REV__ENSG00000123405|ENST00000435572|NFE2	REV__ENSG00000123405|ENST00000435572|NFE2	MULTI-SECPEP	OvCa9_classI_Rep2	2	456.2691345214844	2	457.242535	912.470518	0.30612	0.00013997	0.34592	0.00015817	0.65204	0.00029814	457.2425842426507	76.054	1.1422	74.2	73.481	74.624	-1.854					34	21	2	0	0	0	0.027462	1	6298	6298		30.504	0	1	17789	+		14422	18639	11708	11724	15883	15883					0.010781133517070884
GLYPAPLKI	9	Unmodified	_GLYPAPLKI_					0	0	0		HADHA|p.T393Vfs*9|1|0.03|ENSG00000084754|chr2:26204106-26204107|-/CAATCATGACA|frameshift_variant;ENSG00000084754|ENST00000380649|HADHA;ENST00000471743.1_1_2:26435372-26437931:-|nuORF;ENST00000540341.1_1_12:8787398-8787947:+|nuORF	HADHA|p.T393Vfs*9|1|0.03|ENSG00000084754|chr2:26204106-26204107|-/CAATCATGACA|frameshift_variant	HADHA|p.T393Vfs*9|1|0.03|ENSG00000084754|chr2:26204106-26204107|-/CAATCATGACA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	486.3006896972656	2	486.299853	970.585153	1.9727	0.00095935	0.26968	0.00013115	2.2424	0.0010905	486.2997192315477	106.61	0.74165	106.61	106.36	107.1	0					31	16	4	0	0	0	0.34496	1	12008	12008		57.811	0	1	997070			14423	1720	11709	11725	15884	15884					0.09868422833653767
GLYPNLIQV	9	Unmodified	_GLYPNLIQV_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-MSMS	OvCa99_classI_Rep5	1	508.7936096191406	2	508.792392	1015.57023	2.1935	0.001116	-0.31561	-0.00016058	1.8778	0.00095543	508.79206089546193	137.11	0.52942	137.11	136.87	137.4	0					24	10	3	0	0	0	0.33652	2	15990	15986;15990		58.782	7.4465	1	149850			14424	4112	11710	11726	15885;15886	15886					0.06306930965672564
GLYYIHRNK	9	Unmodified	_GLYYIHRNK_					0	0	0		ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9	ENSG00000136807|ENST00000373264|CDK9	ENSG00000136807|ENST00000373264|CDK9	MULTI-MSMS	OvCa9_classI_Rep2	2	582.3193969726562	2	582.31964	1162.62473	-0.57765	-0.00033638	0.40258	0.00023443	-0.17507	-0.00010194	582.3198349087545	46.184	1.2882	43.474	43.25	44.538	-2.7097					71	25	4	0	0	0	0.048552	3	2742	2742;2748;2755		119.56	30.583	1	264480			14425	4514	11711	11727	15887;15888;15889	15887					0.04991942837091301
GLYYVQFKQVL	11	Unmodified	_GLYYVQFKQVL_					0	0	0			REV__nc|ENSG00000166313|O00213-2|APBB1	REV__nc|ENSG00000166313|O00213-2|APBB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	454.2190856933594	3	453.255334	1356.74417	-0.56656	-0.0002568	-0.51632	-0.00023402	-1.0829	-0.00049082	453.25550195139317	26.655	0.19943	26.655	26.542	26.742	0					5	3	2	0	0	0	0.026221	1	715	715		19.263	0	1	11656	+		14426	21175	11712	11728	15890	15890					0.08007091671129274
GMADLNFKI	9	Unmodified	_GMADLNFKI_					0	0	0		ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	MULTI-MSMS	OvCa99_classI_Rep5	1	504.7638244628906	2	504.762778	1007.511	2.3147	0.0011684	-0.23365	-0.00011794	2.0811	0.0010505	504.7623051759803	113.2	0.5267	113.2	112.97	113.5	0					31	12	4	0	0	0	0.1944	1	12894	12894		77.318	3.0625	1	410840			14427	6553	11713	11729	15891	15891					0.007547116798264142
GMADLNFKI	9	Unmodified	_GMADLNFKI_					0	0	0		ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	504.762778	1007.511	0.26927	0.00013592	0.93193	0.0004704	1.2012	0.00060632	505.26448099279287	113.09	0.34473	112.96	112.67	113.02	-0.12174	-0.11799	0.0009875	NaN	77.318	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6090.1			14428	6553	11713	11729							0.007547116798264142
GMAGSGEPRLP	11	Unmodified	_GMAGSGEPRLP_					0	0	0			REV__nc|ENSG00000204580|Q08345-6|DDR1;REV__ENST00000431373.1_1_6:30853540-30859007:+|nuORF	REV__nc|ENSG00000204580|Q08345-6|DDR1	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.2701416015625	2	536.266216	1070.51788	1.4444	0.00077456	4.2935	0.0023024	5.7378	0.003077	536.2683306488469	130.08	1.5274	128.61	128.27	129.79	-1.4779					58	30	4	0	0	0	0.52842	1	12476	12476		51.193	14.034	1	89515	+		14429	29103;25719	11714	11730	15892	15892					-0.014559754396032076
GMAGSGEPRLP	11	Unmodified	_GMAGSGEPRLP_					0	0	0			REV__nc|ENSG00000204580|Q08345-6|DDR1;REV__ENST00000431373.1_1_6:30853540-30859007:+|nuORF	REV__nc|ENSG00000204580|Q08345-6|DDR1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	536.266216	1070.51788	0.26467	0.00014193	5.4266	0.0029101	5.6913	0.003052	536.2689349280427	129.02	1.0878	128.79	128.48	129.56	-0.22696	0.11702	0.00049695	NaN	51.193	47	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81119	+		14430	29103;25719	11714	11730							-0.014559754396032076
GMAGSGEPRLP	11	Unmodified	_GMAGSGEPRLP_					0	0	0			REV__nc|ENSG00000204580|Q08345-6|DDR1;REV__ENST00000431373.1_1_6:30853540-30859007:+|nuORF	REV__nc|ENSG00000204580|Q08345-6|DDR1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	536.266216	1070.51788	1.5769	0.00084566	4.7947	0.0025712	6.3716	0.0034169	536.2685001092234	129.74	0.8905	128.63	128.39	129.28	-1.1121	-0.048147	-0.00018085	NaN	51.193	29	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39879	+		14431	29103;25719	11714	11730							-0.014559754396032076
GMAKKVTKA	9	Unmodified	_GMAKKVTKA_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MSMS	OvCa99_classI_Rep5	1	467.2811279296875	2	467.281137	932.547722	-0.46034	-0.00021511	0.38374	0.00017931	-0.0766	-3.5794E-05	467.2811957554329	24.964	0.45417	24.964	24.788	25.242	0					18	8	4	0	0	0	0.46356	1	509	509		45.972	10.772	1	225760			14432	8199	11715	11731	15893	15893					0.07875008296400665
GMAKPNMIISV	11	Unmodified	_GMAKPNMIISV_					0	0	0		ENSG00000170323|ENST00000256104|FABP4	ENSG00000170323|ENST00000256104|FABP4	ENSG00000170323|ENST00000256104|FABP4	MULTI-MSMS	OvCa99_classI_Rep5	1	580.8132934570312	2	580.811944	1159.60934	2.2499	0.0013068	0.54972	0.00031928	2.7996	0.0016261	580.8119692047931	99.32	0.61807	99.32	99.076	99.694	0					23	14	2	0	0	0	0.34475	1	10969	10969		65.157	5.039	1	7372800			14433	7093	11716	11732	15894	15894					0.035915719333615925
GMDRDLWI	8	Unmodified	_GMDRDLWI_					0	0	0		ENSG00000171060|ENST00000304519|C8orf74	ENSG00000171060|ENST00000304519|C8orf74	ENSG00000171060|ENST00000304519|C8orf74	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.287841796875	2	503.244752	1004.47495	-1.1504	-0.00057893	3.8217	0.0019232	2.6713	0.0013443	503.24635692997714	93.48	0.29581	90.973	90.763	91.059	-2.5072					8	5	2	0	0	0	0.028476	1	8157	8157		27.882	10.517	1	20369			14434	7168	11717	11733	15895	15895					-0.02710745497017797
GMDRDLWI	8	Unmodified	_GMDRDLWI_					0	0	0		ENSG00000171060|ENST00000304519|C8orf74	ENSG00000171060|ENST00000304519|C8orf74	ENSG00000171060|ENST00000304519|C8orf74	MULTI-MATCH	OvCa9_classI_Rep2	2		2	503.244752	1004.47495	0.05579	2.8076E-05	3.0031	0.0015113	3.0589	0.0015394	503.2462388209219	92.323	0.52785	91.155	90.866	91.394	-1.168	0.090984	-0.00016405	NaN	20.947	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16903			14435	7168	11717	11733							-0.02710745497017797
GMFLAIIII	9	Unmodified	_GMFLAIIII_					0	0	0			REV__tr|A0A7D6ZSB5|A0A7D6ZSB5_9CLOTTransportpermeaseproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07115PE=3SV=1	REV__tr|A0A7D6ZSB5|A0A7D6ZSB5_9CLOTTransportpermeaseproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07115PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	495.8069152832031	2	495.806457	989.598361	-3.0687	-0.0015215	2.4966	0.0012378	-0.57207	-0.00028364	495.80768519755566	143.85	1.3844	142.86	142.49	143.87	-0.9903					67	27	4	0	0	0	0.68641	1	12008	12008		21.702	7.0382	1	103180	+		14436	32181	11718	11734	15896	15896					0.10314537621411546
GMFLWHIT	8	Unmodified	_GMFLWHIT_					0	0	0			REV__ENST00000535479.5_1_12:7086310-7087113:-|nuORF	REV__ENST00000535479.5_1_12:7086310-7087113:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.27734375	2	502.754756	1003.49496	0.73977	0.00037192	1.9924	0.0010017	2.7321	0.0013736	502.75557631215713	84.934	0.87115	82.288	82.025	82.896	-2.6463					40	17	3	0	0	0	0.028476	1	7095	7095		29.842	5.3375	1	270400	+		14437	18049	11719	11735	15897	15897					-0.006649497664284354
GMFQYVKS	8	Unmodified	_GMFQYVKS_					0	0	0			REV__tr|A0A7D7A5U3|A0A7D7A5U3_9CLOTMethionyl-tRNAsynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07510PE=3SV=1	REV__tr|A0A7D7A5U3|A0A7D7A5U3_9CLOTMethionyl-tRNAsynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07510PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.8057861328125	2	480.236396	958.458238	-1.0906	-0.00052375	3.2904	0.0015802	2.1998	0.0010564	480.2380563994178	56.116	1.1393	53.312	52.928	54.068	-2.804					46	22	3	0	0	0	0.028476	1	3899	3899		25.45	0	1	180430	+		14438	32643	11720	11736	15898	15898					-0.02265246382978603
GMGECSQHRTL	11	Oxidation (M)	_GM(Oxidation (M))GECSQHRTL_		GM(1)GECSQHRTL		GM(56)GECSQHRTL	0	0	1			REV__nc|ENSG00000013619|Q13495-3|MAMLD1	REV__nc|ENSG00000013619|Q13495-3|MAMLD1	MULTI-MSMS	OvCa99_classI_Rep5	1	617.7691040039062	2	617.768797	1233.52304	0.5688	0.00035139	-3.1826	-0.0019661	-2.6138	-0.0016147	617.7667024137238	159.46	0.77029	159.46	159.24	160.01	0					27	15	2	0	0	0	0.4646	1	18687	18687		56.434	9.2061	1	102050	+		14439	28706	11721	11737	15899	15899		630			-0.08438039639304407
GMKIQTFGTVL	11	Unmodified	_GMKIQTFGTVL_					0	0	0		tr|A0A553SP82|A0A553SP82_NIACICarbamoylphosphatesynthaselargechainOS=NialliacirculansOX=1397GN=carBPE=3SV=1	tr|A0A553SP82|A0A553SP82_NIACICarbamoylphosphatesynthaselargechainOS=NialliacirculansOX=1397GN=carBPE=3SV=1	tr|A0A553SP82|A0A553SP82_NIACICarbamoylphosphatesynthaselargechainOS=NialliacirculansOX=1397GN=carBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	597.8248901367188	2	597.831191	1193.64783	-1.2268	-0.0007334	-2.539	-0.0015179	-3.7658	-0.0022513	597.8294792297951	126.84	0.5956	125.4	125.24	125.84	-1.4357					23	11	3	0	0	0	0.025594	1	12073	12073		41.427	13.544	1	35312			14440	34014	11722	11738	15900	15900					0.058752008395231314
GMKIQTFGTVL	11	Unmodified	_GMKIQTFGTVL_					0	0	0		tr|A0A553SP82|A0A553SP82_NIACICarbamoylphosphatesynthaselargechainOS=NialliacirculansOX=1397GN=carBPE=3SV=1	tr|A0A553SP82|A0A553SP82_NIACICarbamoylphosphatesynthaselargechainOS=NialliacirculansOX=1397GN=carBPE=3SV=1	tr|A0A553SP82|A0A553SP82_NIACICarbamoylphosphatesynthaselargechainOS=NialliacirculansOX=1397GN=carBPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	597.831191	1193.64783	2.5354	0.0015157	-5.5255	-0.0033033	-2.9902	-0.0017876	597.8278518240882	126.55	0.94066	125.47	125.28	126.22	-1.0715	0.036203	-0.0011167	NaN	41.427	25	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56131			14441	34014	11722	11738							0.058752008395231314
GMLIMLLNV	9	Unmodified	_GMLIMLLNV_					0	0	0		tr|A0A7D6VNT5|A0A7D6VNT5_9CLOTPTSfructosetransportersubunitIICOS=ClostridiumintestinaleOX=36845GN=HZF06_13940PE=4SV=1	tr|A0A7D6VNT5|A0A7D6VNT5_9CLOTPTSfructosetransportersubunitIICOS=ClostridiumintestinaleOX=36845GN=HZF06_13940PE=4SV=1	tr|A0A7D6VNT5|A0A7D6VNT5_9CLOTPTSfructosetransportersubunitIICOS=ClostridiumintestinaleOX=36845GN=HZF06_13940PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.27734375	2	502.287574	1002.56059	0.79431	0.00039897	-1.3451	-0.00067562	-0.55077	-0.00027664	502.2868115219146	85.059	1.7651	82.412	81.978	83.743	-2.6463					111	35	5	0	0	0	0.027462	1	7095	7095		28.254	8.8943	1	1096500			14442	34725	11723	11739	15901	15901					0.059417033642830575
GMLIMLLNV	9	Unmodified	_GMLIMLLNV_					0	0	0		tr|A0A7D6VNT5|A0A7D6VNT5_9CLOTPTSfructosetransportersubunitIICOS=ClostridiumintestinaleOX=36845GN=HZF06_13940PE=4SV=1	tr|A0A7D6VNT5|A0A7D6VNT5_9CLOTPTSfructosetransportersubunitIICOS=ClostridiumintestinaleOX=36845GN=HZF06_13940PE=4SV=1	tr|A0A7D6VNT5|A0A7D6VNT5_9CLOTPTSfructosetransportersubunitIICOS=ClostridiumintestinaleOX=36845GN=HZF06_13940PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	502.287574	1002.56059	2.1477	0.0010787	-0.79094	-0.00039728	1.3567	0.00068146	502.28749089013894	82.469	0.46712	82.469	82.141	82.609	0	0.014324	-0.0008773	NaN	28.254	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	339860			14443	34725	11723	11739							0.059417033642830575
GMLTVVKK	8	Unmodified	_GMLTVVKK_					0	0	0		nc|ENSG00000102290|Q9BZA7-7|PCDH11X;nc|ENSG00000102290|Q9BZA7-2|PCDH11X;ENST00000361724.3_1_X:91090458-91134302:+|nuORF;nc|ENSG00000099715|Q9BZA8-3|PCDH11Y;nc|ENSG00000099715|Q9BZA8-2|PCDH11Y;nc|ENSG00000099715|Q9BZA8-4|PCDH11Y;nc|ENSG00000102290|Q9BZA7-6|PCDH11X;ENSG00000099715|ENST00000698851|PCDH11Y;nc|ENSG00000102290|Q9BZA7-5|PCDH11X;nc|ENSG00000102290|Q9BZA7-4|PCDH11X;nc|ENSG00000102290|Q9BZA7-3|PCDH11X;nc|ENSG00000102290|Q9BZA7-8|PCDH11X;nc|ENSG00000099715|Q9BZA8|PCDH11Y;ENSG00000102290|ENST00000682573|PCDH11X	nc|ENSG00000102290|Q9BZA7-7|PCDH11X	nc|ENSG00000102290|Q9BZA7-7|PCDH11X	MULTI-MSMS	OvCa99_classI_Rep5	1	438.7751770019531	2	438.272781	874.531009	1.9091	0.00083669	-2.9168	-0.0012784	-1.0077	-0.00044166	438.27146307293003	139.66	0.84891	139.66	139.32	140.17	0					23	17	2	0	0	0	0.75915	1	16315	16315		20.482	1.1219	1	23676			14444	1974	11724	11740	15902	15902					0.08872507410444541
GMMPIRKF	8	Unmodified	_GMMPIRKF_					0	0	0		tr|A0A7D6VNE5|A0A7D6VNE5_9CLOTGuaninedeaminaseOS=ClostridiumintestinaleOX=36845GN=guaDPE=3SV=1	tr|A0A7D6VNE5|A0A7D6VNE5_9CLOTGuaninedeaminaseOS=ClostridiumintestinaleOX=36845GN=guaDPE=3SV=1	tr|A0A7D6VNE5|A0A7D6VNE5_9CLOTGuaninedeaminaseOS=ClostridiumintestinaleOX=36845GN=guaDPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.2550964355469	2	490.264433	978.514313	-1.734	-0.0008501	-1.4534	-0.00071253	-3.1873	-0.0015626	490.26361997794737	87.757	1.2109	85.13	84.85	86.061	-2.6269					43	23	2	0	0	0	0.028476	1	7569	7569		39.021	8.5179	1	286520			14445	34697	11725	11741	15903	15903					0.02419683252833238
GMMPIRKF	8	Unmodified	_GMMPIRKF_					0	0	0		tr|A0A7D6VNE5|A0A7D6VNE5_9CLOTGuaninedeaminaseOS=ClostridiumintestinaleOX=36845GN=guaDPE=3SV=1	tr|A0A7D6VNE5|A0A7D6VNE5_9CLOTGuaninedeaminaseOS=ClostridiumintestinaleOX=36845GN=guaDPE=3SV=1	tr|A0A7D6VNE5|A0A7D6VNE5_9CLOTGuaninedeaminaseOS=ClostridiumintestinaleOX=36845GN=guaDPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	490.264433	978.514313	0.6303	0.00030902	-1.9425	-0.00095236	-1.3122	-0.00064334	490.2631127386819	86.604	1.5872	85.141	84.62	86.207	-1.4628	0.011749	-0.0013797	NaN	39.021	70	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140050			14446	34697	11725	11741							0.02419683252833238
GMMPIRKF	8	Unmodified	_GMMPIRKF_					0	0	0		tr|A0A7D6VNE5|A0A7D6VNE5_9CLOTGuaninedeaminaseOS=ClostridiumintestinaleOX=36845GN=guaDPE=3SV=1	tr|A0A7D6VNE5|A0A7D6VNE5_9CLOTGuaninedeaminaseOS=ClostridiumintestinaleOX=36845GN=guaDPE=3SV=1	tr|A0A7D6VNE5|A0A7D6VNE5_9CLOTGuaninedeaminaseOS=ClostridiumintestinaleOX=36845GN=guaDPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	490.264433	978.514313	-1.2087	-0.00059257	0.19849	9.731E-05	-1.0102	-0.00049526	490.2643268321639	87.294	1.7323	85.118	84.683	86.416	-2.1768	-0.012106	0.00071959	NaN	39.021	64	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	288640			14447	34697	11725	11741							0.02419683252833238
GMREGLIFD	9	Unmodified	_GMREGLIFD_					0	0	0		tr|A0A7D6ZIY7|A0A7D6ZIY7_9CLOTPpx/GppAfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_09095PE=4SV=1	tr|A0A7D6ZIY7|A0A7D6ZIY7_9CLOTPpx/GppAfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_09095PE=4SV=1	tr|A0A7D6ZIY7|A0A7D6ZIY7_9CLOTPpx/GppAfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_09095PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.2627563476562	2	519.257859	1036.50117	1.4402	0.00074785	-1.6992	-0.00088231	-0.25895	-0.00013446	519.7593083599492	128.76	0.29715	128.53	128.28	128.57	-0.22696					7	5	2	0	0	0	0.027462	1	12622	12622		31.53	0	1	13994			14448	35631	11726	11742	15904	15904					-0.015624763255345897
GMTAEEKKVK	10	Unmodified	_GMTAEEKKVK_					0	0	0		nc|ENSG00000134160|Q7Z4N2-5|TRPM1;nc|ENSG00000134160|Q7Z4N2-2|TRPM1;nc|ENSG00000134160|Q7Z4N2-3|TRPM1;nc|ENSG00000134160|Q7Z4N2|TRPM1;ENSG00000134160|ENST00000256552|TRPM1	nc|ENSG00000134160|Q7Z4N2-5|TRPM1	nc|ENSG00000134160|Q7Z4N2-5|TRPM1	MULTI-MSMS	OvCa9_classI_Rep2	2	560.8034057617188	2	560.805174	1119.59579	0.98251	0.00055099	-4.2022	-0.0023566	-3.2197	-0.0018056	560.8027147964513	112.28	0.74033	112.15	111.78	112.52	-0.12174					37	14	3	0	0	0	0.49558	1	10619	10619		54.776	1.4249	1	466450			14449	4264	11727	11743	15905	15905					0.04078037425779257
GMVHHLLV	8	Unmodified	_GMVHHLLV_					0	0	0			REV__ENST00000483923.5_1_10:100150731-100167745:-|nuORF	REV__ENST00000483923.5_1_10:100150731-100167745:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	453.25537109375	2	453.254923	904.495293	0.87585	0.00039698	1.844	0.0008358	2.7198	0.0012328	453.2556671396332	49.258	2.2776	46.498	46.078	48.356	-2.7603					121	45	5	0	0	0	0.69862	1	3150	3150		43.626	4.6046	1	1197000	+		14450	18476	11728	11744	15906	15906					0.03922469953431573
GMYVYTVLR	9	Unmodified	_GMYVYTVLR_					0	0	0			REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|297|2|anti-sense	REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|297|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.2913208007812	2	551.291702	1100.56885	-0.82904	-0.00045704	-3.2768	-0.0018065	-4.1058	-0.0022635	551.2898143006373	65.737	1.5576	62.252	61.791	63.349	-3.4854					83	31	4	0	0	0	0.40667	1	4748	4748		51.335	5.3835	1	791400	+		14451	28498	11729	11745	15907	15907					0.022589736052395892
GMYVYTVLR	9	Unmodified	_GMYVYTVLR_					0	0	0			REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|297|2|anti-sense	REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|297|2|anti-sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	551.291702	1100.56885	1.1534	0.00063585	-4.9667	-0.0027381	-3.8133	-0.0021023	551.288717541739	65.066	1.4334	62.342	61.758	63.191	-2.7245	0.044933	-0.00096042	NaN	51.335	57	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144940	+		14452	28498	11729	11745							0.022589736052395892
GMYVYTVLR	9	Unmodified	_GMYVYTVLR_					0	0	0			REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|297|2|anti-sense	REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|297|2|anti-sense	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	551.291702	1100.56885	-0.82904	-0.00045704	-3.2768	-0.0018065	-4.1058	-0.0022635	551.2898143006373	65.737	1.5576	62.252	61.791	63.349	-3.4854	-0.044933	0.00090287	NaN	51.335	83	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	791400	+		14453	28498	11729	11745							0.022589736052395892
GNAIALVLGGG	11	Unmodified	_GNAIALVLGGG_					0	0	0		ENST00000492278.5_1_9:140358686-140372604:-|nuORF;nc|ENSG00000130653|Q6ZV29-3|PNPLA7;nc|ENSG00000130653|Q6ZV29-4|PNPLA7;nc|ENSG00000130653|Q6ZV29|PNPLA7;ENSG00000130653|ENST00000406427|PNPLA7	ENST00000492278.5_1_9:140358686-140372604:-|nuORF	ENST00000492278.5_1_9:140358686-140372604:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.7961120605469	2	471.274367	940.53418	0.14871	7.0084E-05	0.039359	1.8549E-05	0.18807	8.8633E-05	471.2741578590554	79.858	1.2633	77.106	76.797	78.06	-2.7514					59	25	4	0	0	0	0.025521	1	6587	6587		37.812	0	1	278100			14454	3999	11730	11746	15908	15908					0.0615347378881097
GNAPPPQF	8	Unmodified	_GNAPPPQF_					0	0	0			REV__ENSG00000171798|ENST00000304613|KNDC1	REV__ENSG00000171798|ENST00000304613|KNDC1	MULTI-MSMS	OvCa99_classI_Rep5	1	414.20721435546875	2	414.205953	826.397353	3.27	0.0013545	-0.9294	-0.00038496	2.3406	0.00096949	414.20543467476455	80.493	0.59348	80.493	80.192	80.786	0					26	13	3	0	0	0	0.67745	1	8245	8245		47.916	3.3845	1	772210	+		14455	21646	11731	11747	15909	15909					-0.022790153709024707
GNFGGSRNM	9	Unmodified	_GNFGGSRNM_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	OvCa99_classI_Rep5	1	470.2085876464844	2	470.208701	938.402849	-0.19381	-9.1132E-05	0.047288	2.2235E-05	-0.14652	-6.8897E-05	470.2086469182469	40.687	0.761	40.687	40.479	41.24	0					35	16	4	0	0	0	0.055627	1	2489	2489		115.49	47.009	1	923840			14456	3541	11732	11748	15910	15910					-0.06881659850739652
GNGGCSGG	8	Unmodified	_GNGGCSGG_					0	0	0			REV__ENST00000310924.6_1_17:77912907-77913039:-|nuORF	REV__ENST00000310924.6_1_17:77912907-77913039:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	608.3253784179688	1	608.2093	607.202024	-0.61013	-0.00037109	-2.1534	-0.0013097	-2.7635	-0.0016808	608.2097240562468	26.132	1.4494	26.132	25.643	27.092	0					39	28	2	0	0	0	0.028476	1	628	628		4.6817	0.36548	1	12873	+		14457	24347	11733	11749	15911	15911					-0.11728929167395563
GNGYRKRLV	9	Unmodified	_GNGYRKRLV_					0	0	0		ENSG00000131944|ENST00000588258|FAAP24	ENSG00000131944|ENST00000588258|FAAP24	ENSG00000131944|ENST00000588258|FAAP24	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.843017578125	2	531.811982	1061.60941	-3.0391	-0.0016163	-2.3131	-0.0012301	-5.3522	-0.0028464	532.3117089615002	88.416	1.153	85.813	85.427	86.58	-2.6027					49	22	3	0	0	0	0.027462	1	7513	7513		23.042	0	1	39850			14458	4100	11734	11750	15912	15912					0.08107076039891581
GNGYRKRLV	9	Unmodified	_GNGYRKRLV_					0	0	0		ENSG00000131944|ENST00000588258|FAAP24	ENSG00000131944|ENST00000588258|FAAP24	ENSG00000131944|ENST00000588258|FAAP24	MULTI-MATCH	OvCa9_classI_Rep2	2		2	531.811982	1061.60941	-0.087468	-4.6516E-05	-7.0989	-0.0037753	-7.1864	-0.0038218	532.309607861431	87.071	1.1548	85.64	85.228	86.383	-1.4311	-0.15734	-0.0019882	NaN	23.042	39	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52119			14459	4100	11734	11750							0.08107076039891581
GNKEESQE	8	Unmodified	_GNKEESQE_					0	0	0		nc|ENSG00000054523|O60333-3|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	MULTI-MSMS	OvCa99_classI_Rep5	1	460.70208740234375	2	460.701429	919.388304	-0.16479	-7.5918E-05	0.94369	0.00043476	0.7789	0.00035884	460.7018105895419	22.565	4.1216	22.565	21.422	25.544	0					192	96	4	0	0	0	0.73494	1	303	303		34.173	0	1	499350			14460	14875	11735	11751	15913	15913					-0.07461453517885275
GNKKRRQINE	10	Unmodified	_GNKKRRQINE_					0	0	0		nc|ENSG00000137731|P54710-2|FXYD2;ENSG00000137731|ENST00000292079|FXYD2;ENST00000534383.5_1_11:117691389-117694973:-|nuORF	nc|ENSG00000137731|P54710-2|FXYD2	nc|ENSG00000137731|P54710-2|FXYD2	MULTI-MSMS	OvCa9_classI_Rep4_	4	621.8547973632812	2	621.854909	1241.69527	0.85384	0.00053097	-0.92619	-0.00057596	-0.072346	-4.4989E-05	621.8542891257139	35.713	1.0986	32.864	32.54	33.639	-2.849					53	21	3	0	0	0	0.69928	1	1167	1167		19.104	10.868	1	190550			14461	4609	11736	11752	15914	15914					0.08408616154770243
GNKVIEKVLIA	11	Unmodified	_GNKVIEKVLIA_					0	0	0		nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	MULTI-MSMS	OvCa9_classI_Rep3	3	592.3728637695312	2	592.374081	1182.73361	-5.9356	-0.0035161	2.4575	0.0014558	-3.4781	-0.0020603	592.375440751458	154.93	1.0911	153.86	153.56	154.65	-1.0721					63	26	4	0	0	0	0.72466	1	13305	13305		19.997	0.89325	1	79410			14462	9590	11737	11753	15915	15915					0.14955109016705137
GNLLRQVSD	9	Unmodified	_GNLLRQVSD_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.7976379394531	2	501.272355	1000.53016	-3.4599	-0.0017343	-1.9558	-0.00098041	-5.4157	-0.0027148	501.2728471632547	149.32	0.19978	149.09	148.92	149.12	-0.22696					5	3	2	0	0	0	0.027462	1	15110	15110		49.442	12.995	1	5124.8	+		14463	17764	11738	11754	15916	15916					0.02991384295091848
GNLRSGVLQRL	11	Unmodified	_GNLRSGVLQRL_					0	0	0		nc|ENSG00000144736|Q6PI26-2|SHQ1;ENSG00000144736|ENST00000325599|SHQ1;SHQ1|p.M321Tfs*24|1|0.06|ENSG00000144736|chr3:72812769-72812770|-/ATTGATTCCTG|frameshift_variant;SHQ1|p.M321Ifs*35|1|0.06|ENSG00000144736|chr3:72812768-72812769|-/T|frameshift_variant	nc|ENSG00000144736|Q6PI26-2|SHQ1	nc|ENSG00000144736|Q6PI26-2|SHQ1	MULTI-MSMS	OvCa9_classI_Rep4_	4	404.9114990234375	3	404.910561	1211.70985	1.7724	0.00071768	-2.0766	-0.00084083	-0.30413	-0.00012315	404.9096928115207	59.467	1.2299	56.075	55.805	57.035	-3.392					64	24	3	0	0	0	0.62666	1	3976	3976		42.243	4.7344	1	680370			14464	5179	11739	11755	15917	15917					0.11246688302890107
GNLTQQRELRK	11	Unmodified	_GNLTQQRELRK_					0	0	0		ENSG00000136542|ENST00000259056|GALNT5;ENST00000463418.5_1_2:158157328-158158798:+|nuORF	ENSG00000136542|ENST00000259056|GALNT5	ENSG00000136542|ENST00000259056|GALNT5	MULTI-MSMS	OvCa99_classI_Rep5	1	448.25634765625	3	448.256508	1341.7477	0.63121	0.00028295	-1.1211	-0.00050256	-0.48994	-0.00021962	448.2560429644744	32.528	0.78329	32.528	32.353	33.136	0					31	15	3	0	0	0	0.69589	1	1428	1428		31.068	1.5174	1	641330			14465	4497	11740	11756	15918	15918					0.09049154497688505
GNMTEDHVMHL	11	Unmodified	_GNMTEDHVMHL_					0	0	0		nc|ENSG00000019582|P04233-5|CD74;nc|ENSG00000019582|P04233-2|CD74;nc|ENSG00000019582|P04233-4|CD74;ENSG00000019582|ENST00000009530|CD74;ENST00000523813.1_1_5:149785162-149785881:-|nuORF;ENST00000523836.5_1_5:149785806-149792312:-|nuORF;nc|ENSG00000019582|P04233-3|CD74;ENST00000517791.1_1_5:149785806-149786884:-|nuORF	nc|ENSG00000019582|P04233-5|CD74;ENST00000517791.1_1_5:149785806-149786884:-|nuORF	nc|ENSG00000019582|P04233-5|CD74	MULTI-SECPEP	OvCa99_classI_Rep5	1	427.5244140625	3	428.521757	1282.54344	-0.02924	-1.253E-05	0.66543	0.00028515	0.63619	0.00027262	428.5217964108793	60.337	0.4792	60.337	60.079	60.559	0					16	11	2	0	0	0	0.025818	1	5272	5272		23.378	0.81632	1	266470			14466	1019;13062	11741	11757	15919	15919					-0.0865286897947044
GNPRRNDL	8	Unmodified	_GNPRRNDL_					0	0	0		ENSG00000197046|ENST00000389474|SIGLEC15	ENSG00000197046|ENST00000389474|SIGLEC15	ENSG00000197046|ENST00000389474|SIGLEC15	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.2855224609375	2	471.249215	940.483876	0.31572	0.00014878	2.755	0.0012983	3.0707	0.0014471	471.25039859550174	91.315	1.0683	88.773	88.398	89.466	-2.5425					40	20	3	0	0	0	0.028476	1	7929	7929		11.511	5.1984	1	89596			14467	8672	11742	11758	15920	15920					0.011253641836674433
GNPTIMYISP	10	Unmodified	_GNPTIMYISP_					0	0	0			REV__ENST00000464036.5_1_1:1190585-1197670:-|nuORF	REV__ENST00000464036.5_1_1:1190585-1197670:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	547.3399047851562	2	546.773342	1091.53213	0.45199	0.00024714	-3.9196	-0.0021432	-3.4677	-0.001896	546.7709751244952	71.688	1.2044	69.181	68.699	69.903	-2.5071					57	22	3	0	0	0	0.026606	1	5736	5736		44.377	15.228	1	154790	+		14468	20637	11743	11759	15921	15921					-0.009973230113246245
GNRKKQFQLIV	11	Unmodified	_GNRKKQFQLIV_					0	0	0		ENST00000249330.2_1_7:100805946-100806276:-|nuORF	ENST00000249330.2_1_7:100805946-100806276:-|nuORF	ENST00000249330.2_1_7:100805946-100806276:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	444.2693786621094	3	444.269978	1329.7881	0.66341	0.00029474	-0.85654	-0.00038054	-0.19313	-8.5801E-05	444.2695760275752	70.917	1.4989	68.197	67.905	69.404	-2.7196					93	29	5	0	0	0	0.69424	1	3265	3265		31.634	2.0835	1	769250			14469	9788	11744	11760	15922	15922					0.13640120888135243
GNRPKWLLSQ	10	Unmodified	_GNRPKWLLSQ_					0	0	0			REV__ENST00000580482.5_1_17:63793289-63848140:-|nuORF	REV__ENST00000580482.5_1_17:63793289-63848140:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	400.90289306640625	3	400.22789	1197.66184	2.0988	0.00084	3.4634	0.0013861	5.5622	0.0022261	400.22916690998534	81.909	1.1458	80.261	79.971	81.117	-1.6485					47	21	3	0	0	0	0.026681	1	7051	7051		41.08	0	1	166550	+		14470	27821	11745	11761	15923	15923					0.0709161438285264
GNRPYTLE	8	Unmodified	_GNRPYTLE_					0	0	0		tr|A0A7D6VRQ5|A0A7D6VRQ5_9CLOTTypeVIIsecretionproteinEssCOS=ClostridiumintestinaleOX=36845GN=essCPE=4SV=1	tr|A0A7D6VRQ5|A0A7D6VRQ5_9CLOTTypeVIIsecretionproteinEssCOS=ClostridiumintestinaleOX=36845GN=essCPE=4SV=1	tr|A0A7D6VRQ5|A0A7D6VRQ5_9CLOTTypeVIIsecretionproteinEssCOS=ClostridiumintestinaleOX=36845GN=essCPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.3005065917969	2	475.240524	948.466495	-0.051307	-2.4383E-05	0.86469	0.00041094	0.81338	0.00038655	475.24034038476117	66.433	0.63616	62.942	62.708	63.344	-3.4902					25	12	3	0	0	0	0.028476	1	4870	4870		40.778	3.7497	1	75566			14471	34948	11746	11762	15924	15924					-0.009799761419913011
GNRTIDVLGGK	11	Unmodified	_GNRTIDVLGGK_					0	0	0			REV__nc|ENSG00000103196|Q9H0B8-3|CRISPLD2	REV__nc|ENSG00000103196|Q9H0B8-3|CRISPLD2	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.3211059570312	2	565.319837	1128.62512	0.91166	0.00051538	-1.6755	-0.00094721	-0.76387	-0.00043183	565.3187717498485	62.062	1.6451	58.604	58.336	59.981	-3.4577					104	33	4	0	0	0	0.59615	1	4304	4304		45.022	2.1579	1	975150	+		14472	17602	11747	11763	15925	15925					0.06595317766277731
GNVTKVITTKG	11	Unmodified	_GNVTKVITTKG_					0	0	0		tr|A0A553SHX6|A0A553SHX6_NIACINADHoxidaseOS=NialliacirculansOX=1397GN=CEQ21_13800PE=3SV=1	tr|A0A553SHX6|A0A553SHX6_NIACINADHoxidaseOS=NialliacirculansOX=1397GN=CEQ21_13800PE=3SV=1	tr|A0A553SHX6|A0A553SHX6_NIACINADHoxidaseOS=NialliacirculansOX=1397GN=CEQ21_13800PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	559.333740234375	2	559.332413	1116.65027	0.022736	1.2717E-05	1.9367	0.0010832	1.9594	0.001096	559.3338875168262	104.92	4.6529	104.34	102.39	107.04	-0.57639					237	93	5	0	0	0	0.36705	1	9771	9771		63.534	1.4264	1	7580000			14473	33323	11748	11764	15926	15926					0.09661372568825755
GNVTKVITTKG	11	Unmodified	_GNVTKVITTKG_					0	0	0		tr|A0A553SHX6|A0A553SHX6_NIACINADHoxidaseOS=NialliacirculansOX=1397GN=CEQ21_13800PE=3SV=1	tr|A0A553SHX6|A0A553SHX6_NIACINADHoxidaseOS=NialliacirculansOX=1397GN=CEQ21_13800PE=3SV=1	tr|A0A553SHX6|A0A553SHX6_NIACINADHoxidaseOS=NialliacirculansOX=1397GN=CEQ21_13800PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	559.3336181640625	2	559.332413	1116.65027	0.059927	3.3519E-05	2.2701	0.0012697	2.33	0.0013032	559.3337743770333	105.67	2.6036	104.33	103.89	106.49	-1.3482					139	50	4	0	0	0	0.23673	3	7450	7426;7450;7468		75.043	10.698	1	6929000			14474	33323	11748	11764	15927;15928;15929	15928					0.09661372568825755
GNVTKVITTKG	11	Unmodified	_GNVTKVITTKG_					0	0	0		tr|A0A553SHX6|A0A553SHX6_NIACINADHoxidaseOS=NialliacirculansOX=1397GN=CEQ21_13800PE=3SV=1	tr|A0A553SHX6|A0A553SHX6_NIACINADHoxidaseOS=NialliacirculansOX=1397GN=CEQ21_13800PE=3SV=1	tr|A0A553SHX6|A0A553SHX6_NIACINADHoxidaseOS=NialliacirculansOX=1397GN=CEQ21_13800PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.3341064453125	2	559.332413	1116.65027	0.1153	6.449E-05	2.4074	0.0013466	2.5227	0.001411	559.3338934185311	106.4	2.878	104.38	103.6	106.47	-2.0161					138	56	4	0	0	0	0.4646	1	9728	9728		56.434	3.3448	1	9929600			14475	33323	11748	11764	15930	15930					0.09661372568825755
GNVVINPGIKI	11	Unmodified	_GNVVINPGIKI_					0	0	0		tr|A0A7D6VS15|A0A7D6VS15_9CLOTAcetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03830PE=3SV=1	tr|A0A7D6VS15|A0A7D6VS15_9CLOTAcetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03830PE=3SV=1	tr|A0A7D6VS15|A0A7D6VS15_9CLOTAcetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03830PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	562.3436279296875	2	562.345323	1122.67609	-4.5941	-0.0025835	1.3428	0.00075512	-3.2513	-0.0018284	562.3457579287042	161.6	0.62779	161.38	161.04	161.67	-0.22697					24	12	3	0	0	0	0.71498	1	16461	16461		24.519	2.5593	1	29283			14476	34975	11749	11765	15931	15931					0.11966266811123205
GPAFEEFLQ	9	Unmodified	_GPAFEEFLQ_					0	0	0		nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.8425903320312	2	519.250557	1036.48656	-0.95417	-0.00049545	4.1973	0.0021795	3.2432	0.001684	519.2526501699125	101.6	0.59351	100.83	100.47	101.06	-0.76401					14	11	2	0	0	0	0.027343	1	9340	9340		79.451	7.5735	1	18603			14477	8721	11750	11766	15932	15932					-0.03022225202039408
GPAGDAARRL	10	Unmodified	_GPAGDAARRL_					0	0	0		ENST00000486758.5_1_4:77610724-77610853:+|nuORF	ENST00000486758.5_1_4:77610724-77610853:+|nuORF	ENST00000486758.5_1_4:77610724-77610853:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	492.271240234375	2	492.27269	982.530826	2.3223	0.0011432	-2.5117	-0.0012364	-0.18936	-9.3219E-05	492.2712623558752	28.668	0.33427	25.958	25.806	26.14	-2.7097					11	6	2	0	0	0	0.76627	1	617	617		23.042	5.6775	1	19392			14478	12627	11751	11767	15933	15933					0.038862237347984774
GPAIKAALP	9	Unmodified	_GPAIKAALP_					0	0	0		ENSG00000197386|ENST00000355072|HTT;ENST00000510626.5_1_4:3131970-3189635:+|nuORF	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	MULTI-SECPEP	OvCa9_classI_Rep4_	4	420.2362365722656	2	419.263271	836.511988	-1.1949	-0.00050097	1.106	0.00046371	-0.088848	-3.7251E-05	419.2635281491576	81.845	0.5744	79.162	78.963	79.538	-2.683					14	11	2	0	0	0	0.027462	1	6788	6788		18.324	0	1	33687			14479	8708	11752	11768	15934	15934					0.08719294111017462
GPAIKAALP	9	Unmodified	_GPAIKAALP_					0	0	0		ENSG00000197386|ENST00000355072|HTT;ENST00000510626.5_1_4:3131970-3189635:+|nuORF	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	MULTI-MATCH	OvCa9_classI_Rep3	3		2	419.263271	836.511988	0.29121	0.00012209	-0.22005	-9.2258E-05	0.071162	2.9836E-05	419.2631050250817	81.254	0.91062	78.931	78.697	79.608	-2.3226	-0.11552	-0.00016683	NaN	18.324	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27074			14480	8708	11752	11768							0.08719294111017462
GPALPAVRLS	10	Unmodified	_GPALPAVRLS_					0	0	0		ENSG00000185800|ENST00000270223|DMWD	ENSG00000185800|ENST00000270223|DMWD	ENSG00000185800|ENST00000270223|DMWD	MULTI-SECPEP	OvCa9_classI_Rep2	2	490.3179016113281	2	490.798009	979.581465	0.36422	0.00017876	-0.91916	-0.00045112	-0.55494	-0.00027236	490.7973399512553	45.497	0.99972	42.788	42.547	43.547	-2.7097					26	19	2	0	0	0	0.027048	1	2736	2736		18.324	0	1	17334			14481	8285	11753	11769	15935	15935					0.09085753059810031
GPALVAPAK	9	Unmodified	_GPALVAPAK_					0	0	0			REV__MET|p.R218Sfs*29|1|0.11|ENSG00000105976|chr7:116699737-116699738|-/CCCCCGCTGTGCTTGCACCTGGCATCCTCGT|frameshift_variant	REV__MET|p.R218Sfs*29|1|0.11|ENSG00000105976|chr7:116699737-116699738|-/CCCCCGCTGTGCTTGCACCTGGCATCCTCGT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.7040100097656	2	412.255446	822.496338	0.45171	0.00018622	0.56785	0.0002341	1.0196	0.00042032	412.2553885983618	33.705	0.3399	33.705	33.533	33.873	0					9	6	2	0	0	0	0.027462	1	1568	1568		17.365	0	1	54241	+		14482	17770	11754	11770	15936	15936					0.07799007593985152
GPAPAPHSL	9	Unmodified	_GPAPAPHSL_					0	0	0		ENSG00000244405|ENST00000306376|ETV5;nc|ENSG00000244405|P41161-2|ETV5	ENSG00000244405|ENST00000306376|ETV5	ENSG00000244405|ENST00000306376|ETV5	MULTI-MSMS	OvCa9_classI_Rep4_	4	423.7278137207031	2	423.727052	845.439552	-1.0157	-0.00043037	1.0085	0.00042733	-0.0071629	-3.0351E-06	423.72739517501793	54.505	1.3801	51.258	50.927	52.307	-3.2474					82	26	4	0	0	0	0.085069	1	3375	3375		101.21	21.272	1	836580			14483	9395	11755	11771	15937	15937					0.010649600374676993
GPAPGARRGVK	11	Unmodified	_GPAPGARRGVK_					0	0	0			REV__ENST00000392275.1_1_19:30206050-30206326:-|nuORF	REV__ENST00000392275.1_1_19:30206050-30206326:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.3173828125	2	533.317432	1064.62031	-0.079824	-4.2571E-05	0.098611	5.2591E-05	0.018788	1.002E-05	533.3172902188884	35.614	1.0487	32.765	32.491	33.539	-2.849					43	20	3	0	0	0	0.70865	1	1173	1173		26.693	0	1	240560	+		14484	25251	11756	11772	15938	15938					0.09058478414181081
GPAPGRLGP	9	Unmodified	_GPAPGRLGP_					0	0	0		nc|ENSG00000198053|P78324-4|SIRPA;ENSG00000198053|ENST00000358771|SIRPA;nc|ENSG00000198053|P78324-2|SIRPA	nc|ENSG00000198053|P78324-4|SIRPA	nc|ENSG00000198053|P78324-4|SIRPA	MULTI-MSMS	OvCa9_classI_Rep4_	4	411.23626708984375	2	411.235045	820.455536	0.87297	0.000359	-0.75651	-0.0003111	0.11646	4.7891E-05	411.234554217796	56.93	1.5778	53.585	53.12	54.698	-3.3449					68	30	4	0	0	0	0.21395	1	3669	3669		73.975	16.163	1	487540			14485	8777	11757	11773	15939	15939					0.038126662743820816
GPAPRVLSL	9	Unmodified	_GPAPRVLSL_					0	0	0		nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	MULTI-MSMS	OvCa9_classI_Rep4_	4	455.28076171875	2	455.279452	908.544351	1.0159	0.00046253	-1.266	-0.00057637	-0.25004	-0.00011384	455.27875654755223	89.632	1.4568	87.057	86.704	88.161	-2.575					63	28	4	0	0	0	0.12515	1	7687	7687		90.37	8.1293	1	367150			14486	3372	11758	11774	15940	15940					0.08642081514040001
GPAPRVLSL	9	Unmodified	_GPAPRVLSL_					0	0	0		nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	455.279452	908.544351	3.0527	0.0013898	-3.1419	-0.0014304	-0.089187	-4.0605E-05	455.2778437179484	88.426	1.2319	87.059	86.641	87.873	-1.3676	0.03026	-0.001635	NaN	90.37	59	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	277020			14487	3372	11758	11774							0.08642081514040001
GPAPRVLSL	9	Unmodified	_GPAPRVLSL_					0	0	0		nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	455.279452	908.544351	-0.3862	-0.00017583	0.19938	9.0772E-05	-0.18682	-8.5057E-05	455.2794035255399	89.1	1.7119	86.969	86.702	88.414	-2.1309	-0.059183	0.0014075	NaN	90.37	71	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	427130			14488	3372	11758	11774							0.08642081514040001
GPAQLRVD	8	Unmodified	_GPAQLRVD_					0	0	0			REV__TSGA10IP|p.V233Rfs*103|1|0.53|ENSG00000175513|chr11:65947519-65947546|GGGGTGCTGCCCCAGCGCCCCAGGAGGG/-|frameshift_variant	REV__TSGA10IP|p.V233Rfs*103|1|0.53|ENSG00000175513|chr11:65947519-65947546|GGGGTGCTGCCCCAGCGCCCCAGGAGGG/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	427.5560302734375	2	428.237784	854.461016	-0.14636	-6.2677E-05	0.30067	0.00012876	0.15431	6.6081E-05	428.2379249024133	44.722	0.35916	44.722	44.573	44.932	0					14	7	3	0	0	0	0.028476	1	3031	3031		23.042	5.6775	1	134810	+		14489	21902	11759	11775	15941	15941					0.027963450661786737
GPARAGSRGRD	11	Unmodified	_GPARAGSRGRD_					0	0	0		ENST00000302609.7_1_10:38260649-38265560:-|nuORF	ENST00000302609.7_1_10:38260649-38265560:-|nuORF	ENST00000302609.7_1_10:38260649-38265560:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	550.7910766601562	2	550.289402	1098.56425	-0.14173	-7.7991E-05	-2.9686	-0.0016336	-3.1103	-0.0017116	550.2875587612325	21.597	0.27245	21.597	21.45	21.723	0					10	9	2	0	0	0	0.7253	1	130	130		11.636	3.4046	1	17392			14490	10203	11760	11776	15942	15942					0.018912255067334627
GPARAGSVV	9	Unmodified	_GPARAGSVV_					0	0	0		nc|ENSG00000104973|Q71SY5-6|MED25;nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25;MED25|p.D529Rfs*67|1|0.03|ENSG00000104973|chr19:49835087-49835090|CGAC/-|frameshift_variant;ENST00000593595.1_1_19:50321571-50321933:+|nuORF;ENST00000593636.1_1_19:50321571-50322554:+|nuORF;MED25|p.M131Sfs*83|1|0.23|ENSG00000104973|chr19:49828535-49828535|T/-|frameshift_variant	nc|ENSG00000104973|Q71SY5-6|MED25	nc|ENSG00000104973|Q71SY5-6|MED25	MULTI-MSMS	OvCa9_classI_Rep4_	4	407.23382568359375	2	407.232502	812.450451	0.1646	6.703E-05	-0.77323	-0.00031489	-0.60864	-0.00024786	407.2323950006096	44.287	1.4803	41.27	40.979	42.46	-3.0173					97	28	7	0	0	0	0.14998	4	2179	2179;2191;2205;2219		84.916	24.622	1	1046100			14491	2413	11761	11777	15943;15944;15945;15946	15943					0.036723624117598774
GPARAGSVV	9	Unmodified	_GPARAGSVV_					0	0	0		nc|ENSG00000104973|Q71SY5-6|MED25;nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25;MED25|p.D529Rfs*67|1|0.03|ENSG00000104973|chr19:49835087-49835090|CGAC/-|frameshift_variant;ENST00000593595.1_1_19:50321571-50321933:+|nuORF;ENST00000593636.1_1_19:50321571-50322554:+|nuORF;MED25|p.M131Sfs*83|1|0.23|ENSG00000104973|chr19:49828535-49828535|T/-|frameshift_variant	nc|ENSG00000104973|Q71SY5-6|MED25	nc|ENSG00000104973|Q71SY5-6|MED25	MULTI-MATCH	OvCa9_classI_Rep2	2		2	407.232502	812.450451	1.4416	0.00058705	-2.4924	-0.001015	-1.0508	-0.00042793	407.23191694346883	44.333	1.1946	41.623	41.303	42.497	-2.7097	0.17663	-0.0010051	NaN	84.916	87	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183670			14492	2413	11761	11777							0.036723624117598774
GPASHSRAL	9	Unmodified	_GPASHSRAL_					0	0	0		ENST00000483671.1_1_3:16358337-16412408:-|nuORF;ENSG00000131378|ENST00000334133|RFTN1	ENST00000483671.1_1_3:16358337-16412408:-|nuORF	ENST00000483671.1_1_3:16358337-16412408:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	448.24072265625	2	448.240858	894.467164	1.5561	0.00069749	-1.522	-0.0006822	0.034116	1.5292E-05	448.24006520336496	33.205	0.84748	30.495	30.272	31.119	-2.7097					37	16	3	0	0	0	0.36502	2	1170	1162;1170		55.504	6.0627	1	147620			14493	4059	11762	11778	15947;15948	15948					0.015708632977066372
GPASRVSQL	9	Unmodified	_GPASRVSQL_					0	0	0		ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.23883056640625	2	457.756341	913.498129	0.13601	6.2259E-05	-0.23718	-0.00010857	-0.10117	-4.631E-05	457.75616837461087	56.588	0.86043	53.294	52.92	53.781	-3.2944					46	16	3	0	0	0	0.027457	1	3611	3611		56.434	15.656	1	403020			14494	3783	11763	11779	15949	15949					0.03792016611953386
GPASRVSQL	9	Unmodified	_GPASRVSQL_					0	0	0		ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	457.756341	913.498129	-0.090776	-4.1553E-05	0.34191	0.00015651	0.25114	0.00011496	457.75649674206386	56.122	1.0897	53.318	52.879	53.969	-2.804	0.012092	0.00039774	NaN	56.434	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77672			14495	3783	11763	11779							0.03792016611953386
GPAVRPVTLG	10	Unmodified	_GPAVRPVTLG_					0	0	0			REV__nc|ENSG00000106331|O43316-4|PAX4	REV__nc|ENSG00000106331|O43316-4|PAX4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.2704772949219	2	483.790184	965.565815	-2.1723	-0.0010509	2.0145	0.00097458	-0.15782	-7.635E-05	483.7908961858781	49.705	0.83053	46.564	46.301	47.132	-3.1416					21	15	2	0	0	0	0.026915	1	2818	2818		27.882	0	1	46721	+		14496	17795	11764	11780	15950	15950					0.08165466542766353
GPDALLTVAL	10	Unmodified	_GPDALLTVAL_					0	0	0		nc|ENSG00000079337|O95398-2|RAPGEF3;ENST00000479866.5_1_12:48143124-48152369:-|nuORF;ENST00000482843.5_1_12:48142600-48152369:-|nuORF;RAPGEF3|p.R534Hfs*47|1|0.07|ENSG00000079337|chr12:47744064-47744065|-/AAGACCAGCTACTCTCACTGTGT|frameshift_variant;nc|ENSG00000079337|O95398-3|RAPGEF3;ENSG00000079337|ENST00000449771|RAPGEF3	nc|ENSG00000079337|O95398-2|RAPGEF3	nc|ENSG00000079337|O95398-2|RAPGEF3	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.282470703125	2	485.2844	968.554247	0.7704	0.00037386	-3.6213	-0.0017574	-2.8509	-0.0013835	485.28250543597454	33.895	1.5942	31.106	30.706	32.301	-2.7881					60	31	3	0	0	0	0.65434	1	935	935		35.618	0	1	135770			14497	14897	11765	11781	15951	15951					0.06871224728752168
GPDSTRHTTL	10	Unmodified	_GPDSTRHTTL_					0	0	0		ENSG00000123933|ENST00000337190|MXD4;ENST00000513372.5_1_4:2252273-2254467:-|nuORF	ENSG00000123933|ENST00000337190|MXD4	ENSG00000123933|ENST00000337190|MXD4	MULTI-MSMS	OvCa9_classI_Rep2	2	542.7734375	2	542.772719	1083.53089	-2.2031	-0.0011958	2.0904	0.0011346	-0.11263	-6.1135E-05	542.7736710418324	38.07	0.79095	35.361	35.173	35.964	-2.7097					28	15	2	0	0	0	0.69073	1	1759	1759		31.53	1.2121	1	80995			14498	3617	11766	11782	15952	15952					-0.007538210558550418
GPDTKRAKL	9	Unmodified	_GPDTKRAKL_					0	0	0		nc|ENSG00000142230|Q9UBE0-2|SAE1;nc|ENSG00000142230|Q9UBE0-3|SAE1;ENSG00000142230|ENST00000270225|SAE1	nc|ENSG00000142230|Q9UBE0-2|SAE1	nc|ENSG00000142230|Q9UBE0-2|SAE1	MULTI-MSMS	OvCa9_classI_Rep2	2	493.29254150390625	2	493.293091	984.571629	-0.24876	-0.00012271	-0.23923	-0.00011801	-0.48798	-0.00024072	493.292822764803	32.904	0.79625	30.194	29.976	30.772	-2.7097					37	15	3	0	0	0	0.31747	2	1132	1127;1132		60.972	16.855	1	162900			14499	4963	11767	11783	15953;15954	15954					0.07872565054424285
GPELPRAR	8	Unmodified	_GPELPRAR_					0	0	0		ENST00000568925.1_1_16:77246444-77246825:+|nuORF;ENSG00000205078|ENST00000378644|SYCE1L	ENST00000568925.1_1_16:77246444-77246825:+|nuORF	ENST00000568925.1_1_16:77246444-77246825:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	448.25860595703125	2	448.259051	894.503549	-2.462	-0.0011036	2.7472	0.0012315	0.28525	0.00012786	448.2601337945915	142.71	1.2357	141.7	141.38	142.62	-1.0102					68	24	5	0	0	0	0.75241	1	11888	11888		25.45	6.0902	1	329850			14500	9049	11768	11784	15955	15955					0.05207740194418875
GPFKPFGDPGV	11	Unmodified	_GPFKPFGDPGV_					0	0	0			REV__ENSG00000117983|ENST00000529681|MUC5B	REV__ENSG00000117983|ENST00000529681|MUC5B	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.287841796875	2	559.287474	1116.5604	1.6773	0.00093807	-3.3543	-0.001876	-1.677	-0.00093792	559.2853993749533	33.558	2.4419	30.77	30.259	32.701	-2.7881					125	48	3	0	0	0	0.71498	1	875	875		24.519	0	1	122450	+		14501	18375	11769	11785	15956	15956					0.0067774296028346726
GPGAGMCGLC	10	Unmodified	_GPGAGMCGLC_					0	0	0			REV__ENSG00000163703|ENST00000452070|CRELD1	REV__ENSG00000163703|ENST00000452070|CRELD1	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1715393066406	2	433.171884	864.329215	2.6506	0.0011482	-3.8381	-0.0016626	-1.1875	-0.00051439	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.65806	1	1862	1862		35.201	9.7505	1	60065	+		14502	20876	11770	11786	15957	15957					-0.1083766760908702
GPGGALRSPK	10	Unmodified	_GPGGALRSPK_					0	0	0		TMCC2|p.G502R|1|0.19|ENSG00000133069|chr1:205269706-205269706|G/C|missense_variant	TMCC2|p.G502R|1|0.19|ENSG00000133069|chr1:205269706-205269706|G/C|missense_variant	TMCC2|p.G502R|1|0.19|ENSG00000133069|chr1:205269706-205269706|G/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.2618713378906	2	470.272158	938.529764	-0.47781	-0.0002247	-1.7029	-0.00080082	-2.1807	-0.0010255	470.2719459402592	42.826	0.52408	39.819	39.486	40.01	-3.0074					11	9	2	0	0	0	0.026635	1	2019	2019		39.253	0	1	14561			14503	32962	11771	11787	15958	15958					0.058040093658974
GPGGAPARLG	10	Unmodified	_GPGGAPARLG_					0	0	0			REV__ENST00000295324.3_1_2:37873900-37898677:-|nuORF	REV__ENST00000295324.3_1_2:37873900-37898677:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	427.2539367675781	2	426.737951	851.46135	0.1267	5.407E-05	-0.63906	-0.00027271	-0.51235	-0.00021864	426.7377340552841	39.483	0.79408	36.556	36.346	37.14	-2.9264					22	15	2	0	0	0	0.026612	1	1600	1600		55.504	18.476	1	35528	+		14504	24189	11772	11788	15959	15959					0.029677647860467005
GPGGAPARLG	10	Unmodified	_GPGGAPARLG_					0	0	0			REV__ENST00000295324.3_1_2:37873900-37898677:-|nuORF	REV__ENST00000295324.3_1_2:37873900-37898677:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	426.737951	851.46135	-0.82718	-0.00035299	0.86935	0.00037098	0.04217	1.7996E-05	426.73821376215454	39.522	0.64481	36.813	36.607	37.252	-2.7097	0.12822	0.00024328	NaN	55.504	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23928	+		14505	24189	11772	11788							0.029677647860467005
GPGGHVRLKN	10	Unmodified	_GPGGHVRLKN_					0	0	0		ENSG00000174498|ENST00000327987|IGDCC3	ENSG00000174498|ENST00000327987|IGDCC3	ENSG00000174498|ENST00000327987|IGDCC3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.3251953125	2	517.796332	1033.57811	-0.98851	-0.00051184	3.1671	0.0016399	2.1786	0.0011281	517.7975744843859	70.873	0.28256	67.416	67.203	67.486	-3.4563					8	5	2	0	0	0	0.02661	1	5349	5349		58.782	9.3404	1	22702			14506	7470	11773	11789	15960	15960					0.06266503005804225
GPGGPRGTF	9	Unmodified	_GPGGPRGTF_					0	0	0			REV__ENSG00000171812|ENST00000397799|COL8A2	REV__ENSG00000171812|ENST00000397799|COL8A2	MULTI-SECPEP	OvCa99_classI_Rep5	1	423.94305419921875	2	423.216852	844.419151	-0.54575	-0.00023097	1.3663	0.00057824	0.82055	0.00034727	423.21753883506057	42.121	0.21757	42.121	41.982	42.199	0					6	4	2	0	0	0	0.027462	1	2683	2683		30.504	17.544	1	37075	+		14507	21649	11774	11790	15961	15961					-0.009282106223281517
GPGGRPLRKSF	11	Unmodified	_GPGGRPLRKSF_					0	0	0		nc|ENSG00000169220|O43566-5|RGS14;ENSG00000169220|ENST00000408923|RGS14;nc|ENSG00000169220|O43566-4|RGS14;ENST00000514713.5_1_5:176793951-176795930:+|nuORF;ENST00000512000.1_1_5:176794318-176794990:+|nuORF;ENST00000425155.6_1_5:176794318-176794990:+|nuORF	nc|ENSG00000169220|O43566-5|RGS14	nc|ENSG00000169220|O43566-5|RGS14	MULTI-SECPEP	OvCa9_classI_Rep4_	4	586.3693237304688	2	586.338364	1170.66217	-0.86192	-0.00050538	-0.87897	-0.00051537	-1.7409	-0.0010208	586.3378090691433	94.034	0.76864	91.527	91.302	92.071	-2.5072					25	15	2	0	0	0	0.025594	1	8276	8276		41.427	10.923	1	73022			14508	6988	11775	11791	15962	15962					0.08367034102707294
GPGLLAQHLL	10	Unmodified	_GPGLLAQHLL_					0	0	0			REV__ENST00000446816.1_1_2:96874348-96906424:+|nuORF	REV__ENST00000446816.1_1_2:96874348-96906424:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	509.80328369140625	2	509.805834	1017.59712	-1.3099	-0.00066782	-2.9211	-0.0014892	-4.231	-0.002157	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.74484	1	11080	11080		25.45	2.4077	1	99460	+		14509	25907	11776	11792	15963	15963					0.08902039576844345
GPGLSRTGVEL	11	Unmodified	_GPGLSRTGVEL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.H2029Qfs*32|1|0.9|ENSG00000196924|chrX:154353130-154353140|TGCTGGCCACG/-|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.301513671875	2	543.301113	1084.58767	-0.20465	-0.00011119	0.069257	3.7627E-05	-0.13539	-7.356E-05	543.3012372564757	83.952	1.0824	81.289	80.926	82.009	-2.6629					38	22	2	0	0	0	0.50203	1	7005	7005		53.597	5.9395	1	416310			14510	8659	11777	11793	15964	15964					0.048762265006644157
GPGLSRTGVEL	11	Unmodified	_GPGLSRTGVEL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.H2029Qfs*32|1|0.9|ENSG00000196924|chrX:154353130-154353140|TGCTGGCCACG/-|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MATCH	OvCa9_classI_Rep2	2		2	543.301113	1084.58767	-0.30638	-0.00016646	-0.079704	-4.3304E-05	-0.38608	-0.00020976	543.3010326935818	82.894	1.3164	81.295	80.906	82.222	-1.5988	0.0026421	-9.6182E-05	NaN	53.597	75	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197910			14511	8659	11777	11793							0.048762265006644157
GPGRGRLWLP	10	Unmodified	_GPGRGRLWLP_					0	0	0		ENST00000370557.5_1_X:139014747-139014987:-|nuORF	ENST00000370557.5_1_X:139014747-139014987:-|nuORF	ENST00000370557.5_1_X:139014747-139014987:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	555.3009033203125	2	554.82235	1107.63015	-0.50623	-0.00028087	-0.77445	-0.00042968	-1.2807	-0.00071055	554.8213312832536	73.29	0.84267	70.803	70.531	71.373	-2.4873					28	16	3	0	0	0	0.026871	1	3612	3612		37.159	9.2769	1	33173			14512	10933	11778	11794	15965	15965					0.08063666419548099
GPGRKESSL	9	Unmodified	_GPGRKESSL_					0	0	0			REV__ENST00000422375.1_1_11:72851138-72852338:-|nuORF	REV__ENST00000422375.1_1_11:72851138-72852338:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	465.7530212402344	2	465.753798	929.493044	-0.66211	-0.00030838	0.59578	0.00027749	-0.066328	-3.0893E-05	465.7539083170596	59.929	2.3565	57.159	56.567	58.924	-2.7702					98	44	5	0	0	0	0.074342	1	4402	4402		104.75	8.9314	1	1317300	+		14513	25620	11779	11795	15966	15966					0.025477127493331864
GPGSHPTSQ	9	Unmodified	_GPGSHPTSQ_					0	0	0			REV__ENSG00000169184|ENST00000302326|MN1	REV__ENSG00000169184|ENST00000302326|MN1	MULTI-MSMS	OvCa9_classI_Rep3	3	434.2024230957031	2	434.201399	866.388245	1.2083	0.00052466	3.1726	0.0013775	4.3809	0.0019022	434.2025958640944	128.74	0.88927	127.64	127.37	128.26	-1.0933					42	17	3	0	0	0	0.51865	1	10152	10152		40.778	9.2484	1	151830	+		14514	21440	11780	11796	15967	15967					-0.05029408727239115
GPGSQLGKS	9	Unmodified	_GPGSQLGKS_					0	0	0		nc|ENSG00000110880|Q9ULV4-3|CORO1C	nc|ENSG00000110880|Q9ULV4-3|CORO1C	nc|ENSG00000110880|Q9ULV4-3|CORO1C	MULTI-MSMS	OvCa9_classI_Rep4_	4	415.7216796875	2	415.721967	829.429381	-0.9299	-0.00038658	0.71722	0.00029816	-0.21268	-8.8416E-05	415.7221307706575	120.37	1.5373	119.02	118.72	120.26	-1.3444					61	29	4	0	0	0	0.67104	1	11325	11325		23.523	1.5628	1	298300			14515	14957	11781	11797	15968	15968					0.007843523122460283
GPHLQFESP	9	Unmodified	_GPHLQFESP_					0	0	0			REV__ENST00000434735.6_1_12:109973723-109974035:+|nuORF	REV__ENST00000434735.6_1_12:109973723-109974035:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.3248291015625	2	506.248349	1010.48214	-0.91801	-0.00046474	0.98082	0.00049654	0.062805	3.1795E-05	506.2487368068318	75.583	0.98198	73.729	73.167	74.149	-1.854					25	18	2	0	0	0	0.027462	1	6247	6247		45.952	16.802	1	13255	+		14516	25760	11782	11798	15969	15969					-0.022676896249549827
GPIESGFNQ	9	Unmodified	_GPIESGFNQ_					0	0	0		nc|ENSG00000061455|Q9NQX0-1|PRDM6;ENSG00000061455|ENST00000407847|PRDM6	nc|ENSG00000061455|Q9NQX0-1|PRDM6	nc|ENSG00000061455|Q9NQX0-1|PRDM6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.3003845214844	2	474.724707	947.43486	1.0997	0.00052207	-1.0081	-0.00047857	0.091623	4.3496E-05	474.724018756668	67.019	1.8178	63.529	62.902	64.72	-3.4902					82	36	4	0	0	0	0.027441	1	4857	4857		58.782	14.665	1	309210			14517	1269	11783	11799	15970	15970					-0.040959688959446794
GPIGPLGLPGE	11	Unmodified	_GPIGPLGLPGE_					0	0	0			REV__ENSG00000134871|ENST00000360467|COL4A2	REV__ENSG00000134871|ENST00000360467|COL4A2	MULTI-MSMS	OvCa9_classI_Rep2	2	503.7779846191406	2	503.782025	1005.5495	-3.0867	-0.001555	-3.4935	-0.00176	-6.5803	-0.003315	503.78006253314857	36.309	2.2758	33.6	32.75	35.026	-2.7097					126	45	4	0	0	0	0.54764	1	1577	1577		49.442	8.6634	1	296190	+		14518	19239	11784	11800	15971	15971					0.04694340586001999
GPIINKALALI	11	Unmodified	_GPIINKALALI_					0	0	0			REV__tr|A0A553SNH0|A0A553SNH0_NIACISensordomain-containingdiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_24490PE=4SV=1	REV__tr|A0A553SNH0|A0A553SNH0_NIACISensordomain-containingdiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_24490PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.8009643554688	2	561.865892	1121.71723	2.047	0.0011502	-0.60562	-0.00034028	1.4414	0.00080989	561.8652165307659	130.49	0.47693	130.49	130.2	130.68	0					13	9	2	0	0	0	0.025746	1	15143	15143		32.812	6.0163	1	34813	+		14519	30424	11785	11801	15972	15972					0.1612402785060567
GPIPVSQITI	10	Unmodified	_GPIPVSQITI_					0	0	0			REV__ENSG00000179002|ENST00000375371|TAS1R2	REV__ENSG00000179002|ENST00000375371|TAS1R2	MULTI-MSMS	OvCa9_classI_Rep2	2	512.8041381835938	2	512.8055	1023.59645	0.96769	0.00049623	-0.86044	-0.00044124	0.10725	5.4996E-05	512.8048988441653	129.99	1.0876	129.77	129.46	130.55	-0.22696					55	21	4	0	0	0	0.5635	1	12765	12765		46.457	7.2039	1	154290	+		14520	22092	11786	11802	15973	15973					0.08559200137142398
GPISPARVRAL	11	Unmodified	_GPISPARVRAL_					0	0	0			REV__ENST00000474267.5_1_3:55521111-55521369:-|nuORF	REV__ENST00000474267.5_1_3:55521111-55521369:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	568.8463134765625	2	568.848564	1135.68258	-1.1375	-0.00064709	-2.492	-0.0014176	-3.6296	-0.0020647	568.8468854358289	125.71	5.0242	124.3	123.16	128.18	-1.4143					156	99	2	0	0	0	0.70142	1	12009	12009		29.17	2.4771	1	36341	+		14521	26343	11787	11803	15974	15974					0.12016204762517191
GPKHPALKI	9	Unmodified	_GPKHPALKI_					0	0	0		CIAO1-TMEM127|1|fusion;ENSG00000135956|ENST00000258439|TMEM127	CIAO1-TMEM127|1|fusion	CIAO1-TMEM127|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	480.8003845214844	2	480.803094	959.591636	-4.4906	-0.0021591	0.15627	7.5133E-05	-4.3343	-0.002084	480.8030459689351	151.04	2.008	150.08	149.7	151.71	-0.95647					103	39	4	0	0	0	0.61208	1	12819	12819		30.504	3.7075	1	1013500			14522	579	11788	11804	15975	15975					0.11022360785011642
GPKIEDIVK	9	Unmodified	_GPKIEDIVK_					0	0	0			REV__tr|A0A7D6VQR1|A0A7D6VQR1_9CLOTAminopeptidasePfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22160PE=3SV=1	REV__tr|A0A7D6VQR1|A0A7D6VQR1_9CLOTAminopeptidasePfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22160PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.3245544433594	2	499.797675	997.580796	-1.0768	-0.00053816	-1.6845	-0.00084192	-2.7613	-0.0013801	499.7967385424755	34.795	0.3719	34.795	34.632	35.004	0					15	7	3	0	0	0	0.027462	1	1693	1693		44.377	0	1	131390	+		14523	31349	11789	11805	15976	15976					0.08190913620080664
GPKLASRIL	9	Unmodified	_GPKLASRIL_					0	0	0		nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1;chr12:24878649-24894275|315|12.83|0.4|5.01|-|ENST00000539780|BCAT1,BCAT1;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1;ENST00000543099.1_1_12:24970944-24983172:-|nuORF	nc|ENSG00000060982|P54687-2|BCAT1	nc|ENSG00000060982|P54687-2|BCAT1	MULTI-MSMS	OvCa9_classI_Rep2	2	477.8067932128906	2	477.808377	953.6022	-1.2433	-0.00059405	0.9938	0.00047484	-0.24948	-0.00011921	477.80882070384433	67.703	1.8807	65.042	64.644	66.524	-2.661					104	37	5	0	0	0	0.084918	1	5311	5311		101.25	21.313	1	318320			14524	313	11790	11806	15977	15977					0.12354343439471904
GPKLASRIL	9	Unmodified	_GPKLASRIL_					0	0	0		nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1;chr12:24878649-24894275|315|12.83|0.4|5.01|-|ENST00000539780|BCAT1,BCAT1;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1;ENST00000543099.1_1_12:24970944-24983172:-|nuORF	nc|ENSG00000060982|P54687-2|BCAT1	nc|ENSG00000060982|P54687-2|BCAT1	MULTI-MSMS	OvCa9_classI_Rep3	3	477.8080749511719	2	477.808377	953.6022	1.4028	0.00067027	-1.4022	-0.00066999	0.00057516	2.7482E-07	477.80751727561267	67.965	1.6502	65.078	64.789	66.439	-2.8873					73	32	4	0	0	0	0.2784	3	2917	2913;2917;2922		65.465	21.088	1	189830			14525	313	11790	11806	15978;15979;15980	15979					0.12354343439471904
GPKLASRIL	9	Unmodified	_GPKLASRIL_					0	0	0		nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1;chr12:24878649-24894275|315|12.83|0.4|5.01|-|ENST00000539780|BCAT1,BCAT1;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1;ENST00000543099.1_1_12:24970944-24983172:-|nuORF	nc|ENSG00000060982|P54687-2|BCAT1	nc|ENSG00000060982|P54687-2|BCAT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.8083801269531	2	477.808377	953.6022	0.24518	0.00011715	-0.47798	-0.00022838	-0.2328	-0.00011123	477.80810837114154	68.71	1.8577	65.22	64.526	66.384	-3.4902					96	37	4	0	0	0	0.3249	1	5116	5116		60.118	1.8883	1	311720			14526	313	11790	11806	15981	15981					0.12354343439471904
GPKLVYGCGGN	11	Unmodified	_GPKLVYGCGGN_					0	0	0			REV__ENSG00000149527|ENST00000378486|PLCH2	REV__ENSG00000149527|ENST00000378486|PLCH2	MULTI-MSMS	OvCa9_classI_Rep3	3	532.7626953125	2	532.763309	1063.51206	1.0974	0.00058466	-1.2286	-0.00065458	-0.13123	-6.9913E-05	532.7625104763312	113.64	2.2165	112.57	112.01	114.22	-1.0753					113	43	4	0	0	0	0.60323	1	8365	8365		44.377	1.9027	1	496900	+		14527	20169	11791	11807	15982	15982					-0.017150739512544533
GPKLVYGCGGN	11	Unmodified	_GPKLVYGCGGN_					0	0	0			REV__ENSG00000149527|ENST00000378486|PLCH2	REV__ENSG00000149527|ENST00000378486|PLCH2	MULTI-MSMS	OvCa9_classI_Rep3	3	532.7640380859375	2	532.763309	1063.51206	0.13559	7.2236E-05	-0.2184	-0.00011635	-0.08281	-4.4118E-05	532.7630671747069	118.53	2.6747	117.51	115.36	118.03	-1.0271					111	53	3	0	0	0	0.50928	1	8971	8971		52.937	10.072	1	168650	+		14528	20169	11791	11807	15983	15983					-0.017150739512544533
GPKTSILL	8	Unmodified	_GPKTSILL_					0	0	0		ENST00000405737.2_2_13:41635246-41635450:-|nuORF	ENST00000405737.2_2_13:41635246-41635450:-|nuORF	ENST00000405737.2_2_13:41635246-41635450:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	414.7615051269531	2	414.763104	827.511654	-1.3763	-0.00057084	-1.7682	-0.00073337	-3.1445	-0.0013042	414.7623056204016	140.83	3.4972	139.8	137.66	141.16	-1.0339					138	70	4	0	0	0	0.73626	1	11639	11639		33.516	0	1	1080700			14529	11472	11792	11808	15984	15984					0.09099874391188223
GPLALLDL	8	Unmodified	_GPLALLDL_					0	0	0			REV__CTC1|p.P516L|1|0.45|ENSG00000178971|chr17:8234819-8234819|G/A|missense_variant	REV__CTC1|p.P516L|1|0.45|ENSG00000178971|chr17:8234819-8234819|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	406.2481994628906	2	406.249829	810.485105	-1.2292	-0.00049936	-1.8965	-0.00077046	-3.1257	-0.0012698	406.24894809520566	140.8	1.576	139.77	139.38	140.96	-1.0339					88	31	4	0	0	0	0.75915	1	11589	11589		20.482	0	1	902300	+		14530	16250	11793	11809	15985	15985					0.07228185499832307
GPLFRNSQL	9	Unmodified	_GPLFRNSQL_					0	0	0		ENSG00000104960|ENST00000391842|PTOV1;nc|ENSG00000104960|Q86YD1-2|PTOV1;ENST00000601501.5_1_19:50354350-50358367:+|nuORF;ENST00000598632.5_1_19:50354098-50358367:+|nuORF	ENSG00000104960|ENST00000391842|PTOV1	ENSG00000104960|ENST00000391842|PTOV1	MULTI-MSMS	OvCa9_classI_Rep2	2	516.2847900390625	2	516.285266	1030.55598	0.60438	0.00031203	-1.0591	-0.0005468	-0.45472	-0.00023477	516.2845991983337	82.324	1.1405	80.678	80.181	81.321	-1.6467					68	21	5	0	0	0	0.083631	2	7021	7015;7021		101.6	37.393	1	583640			14531	2411	11794	11810	15986;15987	15987					0.04192278537379934
GPLFRNSQL	9	Unmodified	_GPLFRNSQL_					0	0	0		ENSG00000104960|ENST00000391842|PTOV1;nc|ENSG00000104960|Q86YD1-2|PTOV1;ENST00000601501.5_1_19:50354350-50358367:+|nuORF;ENST00000598632.5_1_19:50354098-50358367:+|nuORF	ENSG00000104960|ENST00000391842|PTOV1	ENSG00000104960|ENST00000391842|PTOV1	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.2865600585938	2	516.285266	1030.55598	-0.33471	-0.0001728	-0.21142	-0.00010915	-0.54613	-0.00028196	516.2849698753241	83.368	1.0235	80.705	80.388	81.412	-2.6629					69	20	5	0	0	0	0.041116	2	6922	6922;6932		125.81	27.185	1	908590			14532	2411	11794	11810	15988;15989	15988					0.04192278537379934
GPLFRNSQL	9	Unmodified	_GPLFRNSQL_					0	0	0		ENSG00000104960|ENST00000391842|PTOV1;nc|ENSG00000104960|Q86YD1-2|PTOV1;ENST00000601501.5_1_19:50354350-50358367:+|nuORF;ENST00000598632.5_1_19:50354098-50358367:+|nuORF	ENSG00000104960|ENST00000391842|PTOV1	ENSG00000104960|ENST00000391842|PTOV1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	516.285266	1030.55598	-0.3668	-0.00018938	-0.4447	-0.00022959	-0.8115	-0.00041897	516.2848708220258	82.806	1.0838	80.51	80.138	81.222	-2.2963	-0.121	0.0002463	NaN	125.81	68	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1011300			14533	2411	11794	11810							0.04192278537379934
GPLILHHL	8	Unmodified	_GPLILHHL_					0	0	0			REV__tr|A0A553SG78|A0A553SG78_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_10345PE=3SV=1	REV__tr|A0A553SG78|A0A553SG78_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_10345PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	450.2744140625	2	450.276712	898.538872	-3.7498	-0.0016884	-0.89868	-0.00040465	-4.6485	-0.0020931	450.27623858459356	147.83	1.7988	146.88	146.5	148.3	-0.95119					100	35	5	0	0	0	0.7543	1	12494	12494		24.504	6.1796	1	751980	+		14534	29670	11795	11811	15990	15990					0.08554402722222676
GPLLGRTTEI	10	Unmodified	_GPLLGRTTEI_					0	0	0			REV__ENST00000476477.6_1_1:53362194-53379588:-|nuORF	REV__ENST00000476477.6_1_1:53362194-53379588:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	528.80615234375	2	528.806031	1055.59751	0.16667	8.8138E-05	-1.3196	-0.00069779	-1.1529	-0.00060965	528.8052832238033	86.997	1.5544	85.565	85.122	86.676	-1.4311					69	30	3	0	0	0	0.52321	1	7579	7579		51.335	1.8939	1	385910	+		14535	18538	11796	11812	15991	15991					0.07193414506014051
GPLMENCRSK	10	Unmodified	_GPLMENCRSK_					0	0	0			REV__RFX7|p.Q1124Nfs*5|1|0.19|ENSG00000181827|chr15:56094059-56094068|GCTTCTTTGA/-|frameshift_variant	REV__RFX7|p.Q1124Nfs*5|1|0.19|ENSG00000181827|chr15:56094059-56094068|GCTTCTTTGA/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.3211669921875	2	567.773351	1133.53215	-0.017706	-1.0053E-05	2.05	0.0011639	2.0323	0.0011539	567.7748742656843	22.771	0.15394	22.771	22.7	22.854	0					5	3	2	0	0	0	0.026734	1	245	245		47.657	0	1	19763	+		14536	22251	11797	11813	15992	15992					-0.029276462829784577
GPLPPHLAL	9	Unmodified	_GPLPPHLAL_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000436565.2_1_13:77559322-77559421:+|nuORF	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	OvCa9_classI_Rep3	3	457.776611328125	2	457.776545	913.538538	-0.07591	-3.475E-05	-0.093112	-4.2625E-05	-0.16902	-7.7374E-05	457.77628607763546	103.53	3.4499	102.09	99.932	103.38	-1.4347					146	65	3	0	0	0	0.53728	1	7190	7190		39.021	1.8624	1	423290			14537	4419	11798	11814	15993	15993					0.07830983002349967
GPLPRTGR	8	Unmodified	_GPLPRTGR_					0	0	0		ENST00000466729.5_1_17:15903455-15903548:+|nuORF	ENST00000466729.5_1_17:15903455-15903548:+|nuORF	ENST00000466729.5_1_17:15903455-15903548:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	427.25390625	2	427.253769	852.492984	-1.369	-0.00058491	1.6643	0.00071106	0.29526	0.00012615	427.254318949799	38.75	1.1373	36.041	35.816	36.953	-2.7097					54	22	3	0	0	0	0.6962	1	1846	1846		44.117	1.7207	1	356560			14538	12297	11799	11815	15994	15994					0.0608375753998871
GPLPRTVEL	9	Unmodified	_GPLPRTVEL_					0	0	0		nc|ENSG00000197448|Q9Y2Q3-4|GSTK1;nc|ENSG00000197448|Q9Y2Q3-3|GSTK1;ENSG00000197448|ENST00000358406|GSTK1;nc|ENSG00000197448|Q9Y2Q3-2|GSTK1;ENST00000494735.1_1_7:142960606-142960717:+|nuORF;ENST00000489654.1_1_7:142960606-142961286:+|nuORF;ENST00000473649.1_1_7:142960606-142961786:+|nuORF;GSTK1|p.E115Pfs*12|1|0.08|ENSG00000197448|chr7:143265049-143265059|TGGAGAAAGCG/-|frameshift_variant	nc|ENSG00000197448|Q9Y2Q3-4|GSTK1	nc|ENSG00000197448|Q9Y2Q3-4|GSTK1	MULTI-MSMS	OvCa99_classI_Rep5	1	491.2931213378906	2	491.290017	980.565481	2.7467	0.0013494	-0.81217	-0.00039901	1.9346	0.00095043	491.2896242168522	89.619	1.2693	89.619	89.235	90.504	0					47	30	3	0	0	0	0.2784	1	9571	9571		65.465	24.687	1	1499000			14539	8714	11800	11816	15995	15995					0.07442046822893644
GPLQVVPDI	9	Unmodified	_GPLQVVPDI_					0	0	0		nc|ENSG00000196182|Q8N2I9-2|STK40;nc|ENSG00000196182|Q8N2I9-3|STK40;ENSG00000196182|ENST00000373132|STK40;nc|ENSG00000196182|Q8N2I9-4|STK40	nc|ENSG00000196182|Q8N2I9-2|STK40	nc|ENSG00000196182|Q8N2I9-2|STK40	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.26605224609375	2	469.271293	936.528032	-0.4359	-0.00020456	-2.6559	-0.0012463	-3.0918	-0.0014509	469.26996624584746	38.137	0.63425	38.137	37.851	38.486	0					23	13	2	0	0	0	0.027462	1	2106	2106		21.96	0	1	562120			14540	8573	11801	11817	15996	15996					0.057229555572689605
GPLRKAVTL	9	Unmodified	_GPLRKAVTL_					0	0	0		ENSG00000152778|ENST00000371795|IFIT5	ENSG00000152778|ENST00000371795|IFIT5	ENSG00000152778|ENST00000371795|IFIT5	MULTI-MSMS	OvCa9_classI_Rep3	3	477.8077087402344	2	477.808377	953.6022	1.9488	0.00093115	-1.9172	-0.00091603	0.031633	1.5115E-05	477.8073051342162	64.159	1.1625	61.166	60.836	61.999	-2.9933					49	22	3	0	0	0	0.42676	3	2479	2454;2471;2479		49.442	17.736	1	160040			14541	5643	11802	11818	15997;15998;15999	15999					0.12354343439471904
GPLRQPVGL	9	Unmodified	_GPLRQPVGL_					0	0	0			REV__ENST00000536835.2_1_15:29967228-29967648:+|nuORF	REV__ENST00000536835.2_1_15:29967228-29967648:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	468.7851867675781	2	468.784902	935.55525	-0.10356	-4.8546E-05	-0.27742	-0.00013005	-0.38098	-0.0001786	468.78466460477034	79.679	1.0183	76.927	76.703	77.722	-2.7514					49	20	3	0	0	0	0.48324	1	6489	6489		44.117	6.9577	1	319060	+		14542	27305	11803	11819	16000	16000					0.08489483888331506
GPLRRRRRRKW	11	Unmodified	_GPLRRRRRRKW_					0	0	0			REV__ENST00000326402.8_2_11:92930946-92931072:-|nuORF	REV__ENST00000326402.8_2_11:92930946-92931072:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.9865112304688	3	512.990543	1535.9498	-6.5915	-0.0033814	-3.6254	-0.0018598	-10.217	-0.0052411	512.9885265039754	160.8	2.6264	159.19	157.99	160.62	-1.6101					147	60	4	0	0	0	0.72582	1	15829	15829		3.4087	1.8857	1	58638	+		14543	24491	11804	11820	16001	16001					0.20326147484411194
GPLSPLRRS	9	Unmodified	_GPLSPLRRS_					0	0	0			REV__ENST00000478021.1_1_17:27071820-27071916:+|nuORF	REV__ENST00000478021.1_1_17:27071820-27071916:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	491.7925720214844	2	491.793258	981.571963	1.1056	0.00054371	-0.7215	-0.00035483	0.38406	0.00018888	491.7925468635316	34.599	0.90321	31.811	31.548	32.451	-2.7881					28	17	2	0	0	0	0.46356	1	1048	1048		45.972	0	1	76665	+		14544	26401	11805	11821	16002	16002					0.08043984774269575
GPLTLCAARRR	11	Unmodified	_GPLTLCAARRR_					0	0	0		ENST00000449549.3_1_16:67184143-67184437:-|nuORF	ENST00000449549.3_1_16:67184143-67184437:-|nuORF	ENST00000449549.3_1_16:67184143-67184437:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	405.7461242675781	3	405.236391	1212.68734	1.2229	0.00049556	0.057128	2.3151E-05	1.28	0.00051871	405.5712666803824	74.508	0.48518	71.277	71.095	71.58	-3.2308					16	9	3	0	0	0	0.025445	1	5816	5816		35.178	0	1	18418			14545	12030	11806	11822	16003	16003					0.08950765633608171
GPMIIREIDG	10	Unmodified	_GPMIIREIDG_					0	0	0			REV__ENST00000559190.5_1_15:50545740-50555509:-|nuORF	REV__ENST00000559190.5_1_15:50545740-50555509:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.8175659179688	2	550.792066	1099.56958	-0.40713	-0.00022424	0.85149	0.000469	0.44437	0.00024475	550.7931140412123	23.067	0.25041	23.067	22.894	23.144	0					7	4	2	0	0	0	0.026826	1	274	274		36.447	3.6343	1	16015	+		14546	19660	11807	11823	16004	16004					0.023777682543141054
GPMKPIHMEF	10	Unmodified	_GPMKPIHMEF_					0	0	0		nc|ENSG00000196562|Q8IWU5-2|SULF2;ENSG00000196562|ENST00000688720|SULF2;SULF2|p.G580Rfs*23|1|0.15|ENSG00000196562|chr20:47666328-47666329|-/CCATCCTT|frameshift_variant;SULF2|p.H651Tfs*2|1|0.06|ENSG00000196562|chr20:47665246-47665246|A/-|frameshift_variant	nc|ENSG00000196562|Q8IWU5-2|SULF2	nc|ENSG00000196562|Q8IWU5-2|SULF2	MULTI-MSMS	OvCa99_classI_Rep5	1	593.7926635742188	2	593.791012	1185.56747	1.5634	0.00092831	1.2004	0.00071278	2.7638	0.0016411	593.7916196577046	147.53	3.1371	147.53	147.21	150.34	0					152	63	5	0	0	0	0.55359	1	17239	17239		47.657	1.6851	1	2457000			14547	8626	11808	11824	16005	16005					-0.017889837551820165
GPMMKLKRHF	10	Unmodified	_GPMMKLKRHF_					0	0	0		nc|ENSG00000130377|Q5FVE4-4|ACSBG2;nc|ENSG00000130377|Q5FVE4-3|ACSBG2;ENST00000591741.5_1_19:6161567-6190665:+|nuORF;nc|ENSG00000130377|Q5FVE4-2|ACSBG2;ENSG00000130377|ENST00000588485|ACSBG2	nc|ENSG00000130377|Q5FVE4-4|ACSBG2	nc|ENSG00000130377|Q5FVE4-4|ACSBG2	MULTI-MSMS	OvCa99_classI_Rep5	1	415.561767578125	3	415.563339	1243.66819	0.021129	8.7804E-06	-4.1713	-0.0017334	-4.1502	-0.0017247	415.56164414018417	25.619	0.69915	25.619	25.442	26.142	0					42	13	4	0	0	0	0.65849	1	582	582		35.152	2.1126	1	1412500			14548	3984	11809	11825	16006	16006					0.05610093018344742
GPNMSKKLPK	10	Unmodified	_GPNMSKKLPK_					0	0	0			REV__L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|143|3|sense	REV__L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|143|3|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	551.3261108398438	2	550.318251	1098.62195	-0.2752	-0.00015145	-1.2395	-0.00068211	-1.5147	-0.00083356	550.3158189719985	62.041	0.75797	62.041	61.743	62.501	0					49	17	5	0	0	0	0.59317	1	5516	5516		42.864	2.0861	1	1816600	+		14549	28524	11810	11826	16007	16007					0.07658351387908624
GPNPKSSRTTL	11	Unmodified	_GPNPKSSRTTL_					0	0	0		ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF	ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF	nc|ENSG00000108312|P17480-2|UBTF	MULTI-MSMS	OvCa9_classI_Rep2	2	579.3174438476562	2	579.317294	1156.62004	-1.8182	-0.0010533	1.7351	0.0010052	-0.083079	-4.8129E-05	579.3181889414963	38.501	0.98943	35.791	35.568	36.558	-2.7097					52	19	3	0	0	0	0.48812	2	1811	1805;1811		54.722	3.5823	1	338070			14550	2645;14948	11811	11827	16008;16009	16009					0.04799013903675586
GPNPKSSRTTL	11	Unmodified	_GPNPKSSRTTL_					0	0	0		ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF	ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF	nc|ENSG00000108312|P17480-2|UBTF	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.3170166015625	2	579.317294	1156.62004	-0.41226	-0.00023883	-0.1486	-8.6089E-05	-0.56087	-0.00032492	579.3171446209145	38.652	1.8901	35.725	35.453	37.343	-2.9264					115	37	4	0	0	0	0.31995	1	1526	1526		66.962	8.18	1	1278600			14551	2645;14948	11811	11827	16010	16010					0.04799013903675586
GPPAKGQF	8	Unmodified	_GPPAKGQF_					0	0	0		nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000079156|Q9BZF3-5|OSBPL6	nc|ENSG00000079156|Q9BZF3-3|OSBPL6	nc|ENSG00000079156|Q9BZF3-3|OSBPL6	MULTI-MSMS	OvCa99_classI_Rep5	1	401.2176818847656	2	401.216321	800.418088	-0.64078	-0.00025709	-1.0198	-0.00040916	-1.6606	-0.00066625	401.21578228750144	103.8	0.98087	103.8	103.51	104.49	0					50	22	3	0	0	0	0.63104	1	11611	11611		57.453	1.9484	1	1443100			14552	14896	11812	11828	16011	16011					0.009895750087707711
GPPLYFNTQ	9	Unmodified	_GPPLYFNTQ_					0	0	0		ENST00000457422.6_1_17:42755944-42756196:-|nuORF	ENST00000457422.6_1_17:42755944-42756196:-|nuORF	ENST00000457422.6_1_17:42755944-42756196:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.3323364257812	2	518.758549	1035.50255	0.42936	0.00022273	-4.0106	-0.0020806	-3.5813	-0.0018578	518.7563645209328	72.334	0.99135	69.827	69.537	70.529	-2.5071					24	18	2	0	0	0	0.027446	1	5844	5844		60.118	14.166	1	12537			14553	12126	11813	11829	16012	16012					-0.013785189651343899
GPPRLLLLPL	10	Unmodified	_GPPRLLLLPL_					0	0	0		ENST00000578509.1_1_17:80274885-80275395:-|nuORF;ENST00000581744.1_1_17:80274441-80275395:-|nuORF;ENSG00000173762|ENST00000312648|CD7	ENST00000578509.1_1_17:80274885-80275395:-|nuORF	ENST00000578509.1_1_17:80274885-80275395:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	544.8634643554688	2	544.863152	1087.71175	-1.2614	-0.00068732	1.0938	0.00059598	-0.16763	-9.1336E-05	544.8636084956992	139.58	0.98232	139.36	139.11	140.09	-0.22696					40	19	3	0	0	0	0.58282	2	13956	13932;13956		44.117	6.9577	1	70566			14554	7412	11814	11830	16013;16014	16014					0.1714034905880908
GPQECVLWLD	10	Unmodified	_GPQECVLWLD_					0	0	0			REV__ENST00000551538.5_1_14:105961883-105962582:+|nuORF	REV__ENST00000551538.5_1_14:105961883-105962582:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.2874145507812	2	580.276249	1158.53795	1.5579	0.00090401	-1.3644	-0.00079174	0.19347	0.00011227	580.2754715108631	133.72	0.33189	133.72	133.58	133.91	0					13	6	3	0	0	0	0.027118	1	15546	15546		32.812	3.6629	1	158240	+		14555	22496	11815	11831	16015	16015					-0.03498224499639946
GPQKDRKRK	9	Unmodified	_GPQKDRKRK_					0	0	0			REV__nc|ENSG00000148737|Q9NQB0-17|TCF7L2	REV__nc|ENSG00000148737|Q9NQB0-17|TCF7L2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.3172607421875	2	556.835988	1111.65742	1.5185	0.00084555	1.3502	0.00075186	2.8687	0.0015974	556.8353945759624	35.881	0.89924	33.032	32.69	33.589	-2.849					31	17	3	0	0	0	0.027453	1	1171	1171		45.972	26.869	1	29549	+		14556	20124	11816	11832	16016	16016					0.1060614995992637
GPQLPSLPGRR	11	Unmodified	_GPQLPSLPGRR_					0	0	0		ENST00000262519.13_2_16:30969107-30970039:+|nuORF	ENST00000262519.13_2_16:30969107-30970039:+|nuORF	ENST00000262519.13_2_16:30969107-30970039:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3421630859375	2	589.343646	1176.67274	-3.0463	-0.0017953	1.897	0.001118	-1.1493	-0.00067734	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.72324	1	14904	14904		21.686	1.689	1	272220			14557	9894	11817	11833	16017	16017					0.09147016757128767
GPQLSAKKCFP	11	Unmodified	_GPQLSAKKCFP_					0	0	0			REV__ENST00000541836.5_1_16:15043960-15045536:+|nuORF	REV__ENST00000541836.5_1_16:15043960-15045536:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	588.3182983398438	2	588.315709	1174.61686	-0.14987	-8.8168E-05	2.34	0.0013767	2.1901	0.0012885	588.3171667010001	47.453	2.2552	44.346	43.978	46.233	-3.1077					150	43	5	0	0	0	0.5466	1	2564	2564		49.536	1.8787	1	4526700	+		14558	27377	11818	11834	16018	16018					0.03654047525287751
GPQPPLRLRA	10	Unmodified	_GPQPPLRLRA_					0	0	0			REV__ENST00000512634.1_1_4:177232731-177241571:-|nuORF	REV__ENST00000512634.1_1_4:177232731-177241571:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.8023071289062	2	552.835457	1103.65636	0.38215	0.00021127	-0.43063	-0.00023807	-0.048483	-2.6803E-05	552.8350914367805	60.038	0.73669	56.608	56.358	57.095	-3.43					17	14	2	0	0	0	0.026688	1	4081	4081		40.778	0	1	28680	+		14559	26970	11819	11835	16019	16019					0.10867935591022615
GPQRRRDPS	9	Unmodified	_GPQRRRDPS_					0	0	0		ENST00000489822.5_1_10:121356333-121356384:-|nuORF	ENST00000489822.5_1_10:121356333-121356384:-|nuORF	ENST00000489822.5_1_10:121356333-121356384:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.3292846679688	2	534.786496	1067.55844	-0.5838	-0.00031221	3.0449	0.0016284	2.4611	0.0013162	535.2889148998667	60.059	0.48994	56.629	56.259	56.749	-3.43					11	9	2	0	0	0	0.027441	1	4030	4030		68.787	22.835	1	32631			14560	12685	11820	11836	16020	16020					0.02736126995023369
GPRALTEEL	9	Unmodified	_GPRALTEEL_					0	0	0		RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.T5031Rfs*29|1|0.06|ENSG00000173821|chr17:80389261-80389262|-/TCGG|frameshift_variant;RNF213|p.G5057Vfs*8|1|0.18|ENSG00000173821|chr17:80389340-80389340|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	493.2713928222656	2	493.269281	984.52401	-0.98271	-0.00048474	0.73005	0.00036011	-0.25265	-0.00012463	493.26962580673876	76.279	1.095	73.907	73.62	74.715	-2.3715					68	20	4	0	0	0	0.35444	1	3921	3921		56.721	0	1	878070			14561	7416;32788	11821	11837	16021	16021					0.031128660635772576
GPRAVFVLL	9	Unmodified	_GPRAVFVLL_					0	0	0		ENSG00000068323|ENST00000315869|TFE3;nc|ENSG00000068323|P19532-2|TFE3	ENSG00000068323|ENST00000315869|TFE3	ENSG00000068323|ENST00000315869|TFE3	MULTI-MSMS	OvCa9_classI_Rep3	3	486.3050537109375	2	486.30547	970.596387	0.78572	0.0003821	-1.2488	-0.0006073	-0.46308	-0.0002252	486.30477333878326	121.54	2.2543	120.51	120.01	122.27	-1.0286					108	42	4	0	0	0	0.53957	1	9330	9330		38.806	8.3025	1	892460			14562	1389	11822	11838	16022	16022					0.10991244927799926
GPREAFRQL	9	Unmodified	_GPREAFRQL_					0	0	0		ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	MULTI-MSMS	OvCa9_classI_Rep2	2	537.2963256835938	2	537.296165	1072.57778	-1.8238	-0.00097994	0.69145	0.00037151	-1.1324	-0.00060843	537.2965706710853	60.933	2.3725	58.163	57.501	59.873	-2.7702					136	45	4	0	0	0	0.16264	10	4541	4480;4486;4516;4522;4528;4534;4541;4547;4560;4567		82.75	32.726	1	2338900			14563	7186	11823	11839	16023;16024;16025;16026;16027;16028;16029;16030;16031;16032	16029					0.044390832859335205
GPREAFRQL	9	Unmodified	_GPREAFRQL_					0	0	0		ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.2962036132812	2	537.296165	1072.57778	-0.7634	-0.00041017	-0.64209	-0.00034499	-1.4055	-0.00075516	537.2958521037002	61.751	2.0173	58.293	57.916	59.933	-3.4577					130	41	5	0	0	0	0.1944	5	4303	4233;4255;4267;4291;4303		77.318	15.21	1	5662500			14564	7186	11823	11839	16033;16034;16035;16036;16037	16037					0.044390832859335205
GPREHIVDL	9	Unmodified	_GPREHIVDL_					0	0	0		nc|ENSG00000115380|Q12805-5|EFEMP1;nc|ENSG00000115380|Q12805-2|EFEMP1;nc|ENSG00000115380|Q12805-4|EFEMP1;nc|ENSG00000115380|Q12805-3|EFEMP1;ENSG00000115380|ENST00000355426|EFEMP1	nc|ENSG00000115380|Q12805-5|EFEMP1	nc|ENSG00000115380|Q12805-5|EFEMP1	MULTI-MSMS	OvCa9_classI_Rep2	2	518.2811889648438	2	518.282723	1034.55089	0.26729	0.00013853	-0.81508	-0.00042244	-0.54778	-0.00028391	518.2822567889135	66.733	2.873	64.037	63.567	66.44	-2.6958					124	57	4	0	0	0	0.3076	2	5194	5176;5194		62.107	1.9892	1	1284900			14565	3092	11824	11840	16038;16039	16039					0.03499974674764417
GPREQSTYVLV	11	Unmodified	_GPREQSTYVLV_					0	0	0		ENSG00000142661|ENST00000374434|MYOM3;nc|ENSG00000142661|Q5VTT5-2|MYOM3;ENST00000475306.1_1_1:24410803-24434643:-|nuORF	ENSG00000142661|ENST00000374434|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	MULTI-SECPEP	OvCa99_classI_Rep5	1	416.9036865234375	3	416.890944	1247.651	0.0094284	3.9306E-06	-0.81772	-0.0003409	-0.80829	-0.00033697	416.8910007721929	36.141	0.36647	36.141	35.984	36.351	0					12	7	3	0	0	0	0.025722	1	1876	1876		41.08	26.386	1	81982			14566	4988	11825	11841	16040	16040					0.03708167217905611
GPRGRVGL	8	Unmodified	_GPRGRVGL_					0	0	0			REV__ENST00000409806.7_2_6:149772227-149772305:-|nuORF	REV__ENST00000409806.7_2_6:149772227-149772305:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	406.2482604980469	2	406.248486	810.48242	-1.2292	-0.00049936	1.4085	0.00057221	0.17932	7.285E-05	406.24894809520566	140.8	1.576	139.77	139.38	140.96	-1.0339					88	31	4	0	0	0	0.75915	1	11640	11640		20.482	2.1574	1	902300	+		14567	25481	11826	11842	16041	16041					0.06959774885569914
GPRKGGRVI	9	Unmodified	_GPRKGGRVI_					0	0	0		ENSG00000104979|ENST00000588234|C19orf53	ENSG00000104979|ENST00000588234|C19orf53	ENSG00000104979|ENST00000588234|C19orf53	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.29571533203125	2	470.295968	938.577383	0.42479	0.00019978	-1.0382	-0.00048825	-0.61338	-0.00028847	470.29547904277877	21.564	1.9538	20.226	19.77	21.724	-1.3386					105	43	5	0	0	0	0.44294	3	205	168;180;205		47.916	8.4985	1	1545000			14568	2415	11827	11843	16042;16043;16044	16044					0.10563708356744428
GPRLGSMKTK	10	Unmodified	_GPRLGSMKTK_					0	0	0			REV__ENST00000465553.5_1_X:154508114-154563754:-|nuORF	REV__ENST00000465553.5_1_X:154508114-154563754:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	537.8060913085938	2	537.808051	1073.60155	-0.94155	-0.00050637	-2.9627	-0.0015934	-3.9043	-0.0020998	537.8064194762118	69.853	1.4073	67.282	66.915	68.322	-2.5707					86	27	5	0	0	0	0.55109	1	5567	5567		47.96	0.30219	1	1089100	+		14569	26170	11828	11844	16045	16045					0.06769180728088031
GPRLGSMKTK	10	Unmodified	_GPRLGSMKTK_					0	0	0			REV__ENST00000465553.5_1_X:154508114-154563754:-|nuORF	REV__ENST00000465553.5_1_X:154508114-154563754:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.8065795898438	2	537.808051	1073.60155	-1.5759	-0.00084753	-2.3002	-0.0012371	-3.8761	-0.0020846	537.8067572142412	71.044	1.1608	67.588	67.299	68.46	-3.4563					77	23	4	0	0	0	0.34811	2	5402	5391;5402		75.043	16.813	1	1459500	+		14570	26170	11828	11844	16046;16047	16047					0.06769180728088031
GPRLRQEE	8	Unmodified	_GPRLRQEE_					0	0	0			REV__ENST00000593308.1_1_19:49127732-49127816:+|nuORF	REV__ENST00000593308.1_1_19:49127732-49127816:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.8021240234375	2	492.764697	983.514842	0.50152	0.00024713	4.0922	0.0020165	4.5938	0.0022636	492.7678957139408	60.985	0.34951	57.555	57.395	57.744	-3.43					9	6	2	0	0	0	0.028476	1	4165	4165		60.972	0	1	14279	+		14571	27962	11829	11845	16048	16048					0.02242517497904828
GPRLSRIFLI	10	Unmodified	_GPRLSRIFLI_					0	0	0			REV__ENST00000532085.1_1_11:118897174-118897576:-|nuORF	REV__ENST00000532085.1_1_11:118897174-118897576:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.3705444335938	2	586.369133	1170.72371	-0.81014	-0.00047504	0.51223	0.00030036	-0.29791	-0.00017468	586.3692629340027	94.416	2.9527	91.947	91.666	94.618	-2.4685					167	58	5	0	0	0	0.48198	1	8312	8312		56.721	1.2168	1	1387500	+		14572	27226	11830	11846	16049	16049					0.14517965801974242
GPRLTVKAL	9	Unmodified	_GPRLTVKAL_					0	0	0		nc|ENSG00000090686|Q86UV5-5|USP48;nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-3|USP48	nc|ENSG00000090686|Q86UV5-5|USP48	nc|ENSG00000090686|Q86UV5-5|USP48	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.80914306640625	2	477.808377	953.6022	0.96609	0.0004616	-1.3912	-0.00066474	-0.42514	-0.00020314	477.80761077974176	67.155	1.5749	63.665	62.951	64.526	-3.4902					76	31	4	0	0	0	0.46356	1	4917	4917		45.972	8.8131	1	443930			14573	1846	11831	11847	16050	16050					0.12354343439449167
GPRLTVKAL	9	Unmodified	_GPRLTVKAL_					0	0	0		nc|ENSG00000090686|Q86UV5-5|USP48;nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-3|USP48	nc|ENSG00000090686|Q86UV5-5|USP48	nc|ENSG00000090686|Q86UV5-5|USP48	MULTI-MATCH	OvCa9_classI_Rep2	2		2	477.808377	953.6022	0.38104	0.00018206	-0.78545	-0.00037529	-0.40441	-0.00019323	477.8079464798094	66.321	1.8862	63.626	62.872	64.758	-2.6958	-0.01943	0.00026899	NaN	45.972	61	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	374920			14574	1846	11831	11847							0.12354343439449167
GPRQVSLR	8	Unmodified	_GPRQVSLR_					0	0	0		HERVH-int_dup82|chr1:53424769-53427698:+|2.2654386177007835|0.0864871400321217|4.71|417.0|103|1|anti-sense;chr1:53417666-53424901|129|10.38|0.0|19.99|-|1|TE_info:HERVH-int,HERVH-int_dup82,ERV1,LTR,donor,+,53424901,53427698|SLC25A3P1,None|55	HERVH-int_dup82|chr1:53424769-53427698:+|2.2654386177007835|0.0864871400321217|4.71|417.0|103|1|anti-sense	HERVH-int_dup82|chr1:53424769-53427698:+|2.2654386177007835|0.0864871400321217|4.71|417.0|103|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.7722473144531	2	456.772326	911.530098	-0.81112	-0.0003705	0.15873	7.2506E-05	-0.65239	-0.00029799	456.77233949196074	41.913	1.6539	38.932	38.593	40.247	-2.9804					67	31	3	0	0	0	0.48084	2	1905	1905;1917		79.451	8.1553	1	647970			14575	260	11832	11848	16051;16052	16051					0.07079429085740685
GPRSSLRVL	9	Unmodified	_GPRSSLRVL_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;SF3B3|p.K976Dfs*14|1|0.12|ENSG00000189091|chr16:70567509-70567510|-/GACTATTTTACCATAATTTTTA|frameshift_variant;SF3B3-DDX19B|4|fusion;SF3B3-DDX19B|1|fusion	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OvCa9_classI_Rep2	2	492.7997741699219	2	492.801083	983.587613	-0.13395	-6.6009E-05	-0.63002	-0.00031047	-0.76397	-0.00037648	492.80080175302294	60.14	2.6551	57.369	56.62	59.275	-2.7702					118	50	3	0	0	0	0.21231	11	4413	4390;4395;4401;4407;4413;4419;4425;4431;4437;4443;4450		74.255	35.002	1	2695700			14576	8533	11833	11849	16053;16054;16055;16056;16057;16058;16059;16060;16061;16062;16063	16057					0.09516271291329303
GPRSSLRVL	9	Unmodified	_GPRSSLRVL_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;SF3B3|p.K976Dfs*14|1|0.12|ENSG00000189091|chr16:70567509-70567510|-/GACTATTTTACCATAATTTTTA|frameshift_variant;SF3B3-DDX19B|4|fusion;SF3B3-DDX19B|1|fusion	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.8023376464844	2	492.801083	983.587613	0.48653	0.00023976	-1.4785	-0.00072861	-0.99198	-0.00048885	492.8003668451582	60.85	2.2415	57.42	57.095	59.336	-3.43					111	45	3	0	0	0	0.28934	3	4129	4129;4141;4153		64.207	16.55	1	4101800			14577	8533	11833	11849	16064;16065;16066	16064					0.09516271291329303
GPRSVRTTP	9	Unmodified	_GPRSVRTTP_					0	0	0		ENST00000494873.1_1_1:51702296-51736909:+|nuORF	ENST00000494873.1_1_1:51702296-51736909:+|nuORF	ENST00000494873.1_1_1:51702296-51736909:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	485.7751770019531	2	485.775065	969.535577	0.72839	0.00035383	-1.0292	-0.00049997	-0.30084	-0.00014614	485.7744551887758	43.049	1.3356	40.339	39.868	41.203	-2.7097					59	26	3	0	0	0	0.40667	1	2364	2364		51.335	1.3109	1	230050			14578	12764	11834	11850	16067	16067					0.0495910787755065
GPRTPALVI	9	Unmodified	_GPRTPALVI_					0	0	0		HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|43|3|sense	HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|43|3|sense	HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|43|3|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.2888488769531	2	462.287277	922.560001	0.073355	3.3911E-05	1.3471	0.00062276	1.4205	0.00065667	462.28873808578413	86.463	2.5937	83.836	83.061	85.655	-2.6269					109	51	5	0	0	0	0.091859	1	7314	7314		99.375	0	1	2207600			14579	14412	11835	11851	16068	16068					0.09562368031083679
GPRVPATL	8	Unmodified	_GPRVPATL_					0	0	0			REV__ENST00000561903.6_1_16:1830271-1830817:+|nuORF	REV__ENST00000561903.6_1_16:1830271-1830817:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	405.7442626953125	2	405.745245	809.475937	1.1554	0.00046878	-0.86817	-0.00035225	0.2872	0.00011653	405.74475762963664	73.362	1.8327	70.962	70.22	72.052	-2.3999					79	34	4	0	0	0	0.42208	1	5975	5975		85.359	5.4203	1	506230	+		14580	27641	11836	11852	16069	16069					0.06357836934171246
GPRVVAGLLTP	11	Unmodified	_GPRVVAGLLTP_					0	0	0			REV__AMIGO2|p.N439Kfs*24|1|0.45|ENSG00000139211|chr12:47077686-47077687|-/AAGTCTATTTTTAAAGGACACTAATACATAAAGT|frameshift_variant	REV__AMIGO2|p.N439Kfs*24|1|0.45|ENSG00000139211|chr12:47077686-47077687|-/AAGTCTATTTTTAAAGGACACTAATACATAAAGT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3344116210938	2	540.332216	1078.64988	-0.47446	-0.00025637	0.10633	5.7454E-05	-0.36813	-0.00019891	540.3321248826727	110.8	1.2338	110.66	110.34	111.57	-0.13961					65	24	4	0	0	0	0.52842	1	10447	10447		51.193	10.62	1	221000	+		14581	15630	11837	11853	16070	16070					0.11369997639667417
GPSAQPMQ	8	Unmodified	_GPSAQPMQ_					0	0	0			REV__ENSG00000100139|ENST00000215957|MICALL1	REV__ENSG00000100139|ENST00000215957|MICALL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.2203674316406	2	408.189445	814.364338	0.51741	0.0002112	-4.2245	-0.0017244	-3.707	-0.0015132	408.18755629073274	52.09	0.47785	52.09	51.912	52.39	0					18	10	3	0	0	0	0.028476	1	4046	4046		47.916	15.961	1	287330	+		14582	17372	11838	11854	16071	16071					-0.050269654852627355
GPSERQGLL	9	Unmodified	_GPSERQGLL_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.31365966796875	2	478.761623	955.508694	0.16967	8.123E-05	-0.26202	-0.00012545	-0.092357	-4.4217E-05	478.76119661202654	31.732	0.44667	31.732	31.509	31.956	0					14	8	2	0	0	0	0.027462	1	1312	1312		30.504	0	1	77435	+		14583	16701	11839	11855	16072	16072					0.02915999266383551
GPSGAVKLL	9	Unmodified	_GPSGAVKLL_					0	0	0			REV__ENSG00000168003|ENST00000338663|SLC3A2	REV__ENSG00000168003|ENST00000338663|SLC3A2	MULTI-MSMS	OvCa9_classI_Rep2	2	421.2593078613281	2	421.260728	840.506903	0.1688	7.111E-05	-3.1201	-0.0013144	-2.9513	-0.0012433	421.2592965587955	134.89	1.4682	134.66	133.66	135.13	-0.22696					55	29	3	0	0	0	0.64339	1	13385	13385		26.796	1.3459	1	378840	+		14584	21333	11840	11856	16073	16073					0.08026990248424681
GPSKKRKVD	9	Unmodified	_GPSKKRKVD_					0	0	0		TAF4|p.R1015S|1|0.08|ENSG00000130699|chr20:61997595-61997595|C/A|missense_variant	TAF4|p.R1015S|1|0.08|ENSG00000130699|chr20:61997595-61997595|C/A|missense_variant	TAF4|p.R1015S|1|0.08|ENSG00000130699|chr20:61997595-61997595|C/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.2813415527344	2	507.806365	1013.59818	-1.3533	-0.00068722	-0.46511	-0.00023618	-1.8184	-0.0009234	507.80634078156913	45.2	0.6235	42.161	41.919	42.543	-3.0385					12	11	2	0	0	0	0.027462	1	2308	2308		21.96	0	1	17212			14585	32944	11841	11857	16074	16074					0.09192253945752782
GPSRNVLLL	9	Unmodified	_GPSRNVLLL_					0	0	0			REV__ENST00000294161.10_1_11:62495660-62495819:+|nuORF	REV__ENST00000294161.10_1_11:62495660-62495819:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	484.79827880859375	2	484.798009	967.581465	0.22924	0.00011113	-0.80006	-0.00038787	-0.57082	-0.00027673	484.7977670768121	96.694	2.3628	95.735	94.933	97.296	-0.95857					93	47	4	0	0	0	0.40667	1	8722	8722		51.335	14.176	1	1346100	+		14586	24180	11842	11858	16075	16075					0.09637753059814713
GPSVLRSTL	9	Unmodified	_GPSVLRSTL_					0	0	0		nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	MULTI-MSMS	OvCa9_classI_Rep3	3	465.27532958984375	2	465.274367	928.53418	-0.78523	-0.00036535	0.56078	0.00026092	-0.22445	-0.00010443	465.2745441353062	75.967	1.291	73.595	73.267	74.558	-2.3715					68	24	3	0	0	0	0.20111	2	3879	3879;3885		76.17	26.285	1	825750			14587	4891	11843	11859	16076;16077	16076					0.06705473788792915
GPSVLRSTL	9	Unmodified	_GPSVLRSTL_					0	0	0		nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.2769775390625	2	465.274367	928.53418	-0.54918	-0.00025552	0.25214	0.00011731	-0.29705	-0.00013821	465.2744028504898	76.986	1.1115	74.17	73.907	75.018	-2.8165					41	22	2	0	0	0	0.1149	3	6135	6135;6147;6160		93.143	28.936	1	847890			14588	4891	11843	11859	16078;16079;16080	16078					0.06705473788792915
GPSVLRSTL	9	Unmodified	_GPSVLRSTL_					0	0	0		nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	465.274367	928.53418	0.60954	0.0002836	0.23348	0.00010863	0.84302	0.00039223	465.2743268113771	74.267	0.50131	74.267	74.056	74.557	0	0.062903	-0.00010773	NaN	93.143	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2243200			14589	4891	11843	11859							0.06705473788792915
GPSVLRSTL	9	Unmodified	_GPSVLRSTL_					0	0	0		nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	465.274367	928.53418	-0.68468	-0.00031857	0.5359	0.00024934	-0.14879	-6.9226E-05	465.27454906894866	76.03	1.2451	74.176	73.534	74.779	-1.854	-0.028331	0.00017368	NaN	93.143	45	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	366370			14590	4891	11843	11859							0.06705473788792915
GPSVLRSTL	9	Unmodified	_GPSVLRSTL_					0	0	0		nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	465.274367	928.53418	-0.62946	-0.00029287	4.6608	0.0021685	4.0313	0.0018757	465.2764270062762	75.187	0.82976	73.216	72.639	73.469	-1.9711	-0.11536	0.002295	NaN	76.17	29	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133930			14591	4891	11843	11859							0.06705473788792915
GPSVLRSTL	9	Unmodified	_GPSVLRSTL_					0	0	0		nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	465.274367	928.53418	-0.21114	-9.824E-05	4.2357	0.0019707	4.0245	0.0018725	465.2762369977755	76.122	1.2862	73.183	72.545	73.832	-2.9389	-0.14829	0.0018994	NaN	76.17	43	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	384460			14592	4891	11843	11859							0.06705473788792915
GPVEIFMNKF	10	Unmodified	_GPVEIFMNKF_					0	0	0		ENSG00000121904|ENST00000373381|CSMD2;nc|ENSG00000121904|Q7Z408|CSMD2	ENSG00000121904|ENST00000373381|CSMD2	ENSG00000121904|ENST00000373381|CSMD2	MULTI-MSMS	OvCa9_classI_Rep2	2	591.305908203125	2	591.30481	1180.59507	-0.62891	-0.00037188	4.0205	0.0023773	3.3915	0.0020054	591.3067379255534	67.003	2.4253	64.342	63.552	65.977	-2.661					119	48	4	0	0	0	0.37436	1	5220	5220		71.877	1.0613	1	538260			14593	3506	11844	11860	16081	16081					0.011992427767154368
GPVIIILIATL	11	Unmodified	_GPVIIILIATL_					0	0	0			REV__ENSG00000151012|ENST00000280612|SLC7A11	REV__ENSG00000151012|ENST00000280612|SLC7A11	MULTI-MSMS	OvCa9_classI_Rep3	3	561.8775634765625	2	561.878468	1121.74238	0.97315	0.00054679	-3.3474	-0.0018809	-2.3743	-0.0013341	561.8764524181454	64.71	1.2124	61.716	61.395	62.607	-2.9933					52	23	3	0	0	0	0.70518	1	2511	2511		27.882	4.8398	1	78350	+		14594	20211	11845	11861	16082	16082					0.1863808265318312
GPVISKVYIGG	11	Unmodified	_GPVISKVYIGG_					0	0	0			REV__nc|ENSG00000170324|Q68DX3-2|FRMPD2	REV__nc|ENSG00000170324|Q68DX3-2|FRMPD2	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3154907226562	2	545.318774	1088.623	-1.9768	-0.001078	-1.9702	-0.0010744	-3.947	-0.0021524	545.3174971514211	139.12	3.9663	138.06	135.98	139.95	-1.0595					186	80	3	0	0	0	0.72466	1	11347	11347		19.997	0	1	94142	+		14595	21532	11846	11862	16083	16083					0.08222889028456848
GPVKRKAAS	9	Unmodified	_GPVKRKAAS_					0	0	0		ENST00000521580.2_1_1:35320720-35321281:-|nuORF	ENST00000521580.2_1_1:35320720-35321281:-|nuORF	ENST00000521580.2_1_1:35320720-35321281:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	457.28204345703125	2	457.282526	912.550499	0.47425	0.00021687	-0.49128	-0.00022466	-0.017036	-7.7904E-06	457.2821592199895	58.808	2.4649	56.028	55.184	57.649	-2.7801					125	47	5	0	0	0	0.50149	2	4263	4263;4270		42.396	14.514	1	550990			14596	13125	11847	11863	16084;16085	16084					0.09072599745547905
GPVLILHH	8	Unmodified	_GPVLILHH_					0	0	0			REV__chr17:8176080-8176200|219|11.42|0.43|4.72|-|2|None,TMEM107|1	REV__chr17:8176080-8176200|219|11.42|0.43|4.72|-|2|None,TMEM107|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	443.2703857421875	2	443.268887	884.523222	-1.1649	-0.00051636	-3.6334	-0.0016106	-4.7983	-0.0021269	443.26716337641926	44.426	1.4367	41.388	41.106	42.543	-3.0385					63	27	3	0	0	0	0.7363	1	2195	2195		33.493	2.9893	1	514330	+		14597	15953	11848	11864	16086	16086					0.07634116205178998
GPVLRLILC	9	Unmodified	_GPVLRLILC_					0	0	0		ENST00000446334.1_3_1:26231931-26231967:-|nuORF	ENST00000446334.1_3_1:26231931-26231967:-|nuORF	ENST00000446334.1_3_1:26231931-26231967:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.29095458984375	2	492.307155	982.599758	1.0333	0.0005087	-0.61259	-0.00030158	0.4207	0.00020711	492.3066804755684	33.683	0.4438	30.895	30.657	31.101	-2.7881					15	8	2	0	0	0	0.027462	1	938	938		38.806	12.01	1	10001			14598	11992	11849	11865	16087	16087					0.10776171710153903
GPVPATRR	8	Unmodified	_GPVPATRR_					0	0	0			REV__chr2:241685873-241686654|199|10.67|0.29|5.22|-|1|None,DTYMK|1	REV__chr2:241685873-241686654|199|10.67|0.29|5.22|-|1|None,DTYMK|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	427.2538757324219	2	427.253769	852.492984	0.47927	0.00020477	-0.70424	-0.00030089	-0.22497	-9.6119E-05	427.25343840755255	38.849	1.9995	35.923	35.502	37.502	-2.9264					103	39	4	0	0	0	0.62934	1	1562	1562		57.811	0	1	1592600	+		14599	15997	11850	11866	16088	16088					0.0608375753998871
GPVRIKTWI	9	Unmodified	_GPVRIKTWI_					0	0	0			REV__nc|ENSG00000151388|P58397-3|ADAMTS12	REV__nc|ENSG00000151388|P58397-3|ADAMTS12	MULTI-MSMS	OvCa9_classI_Rep2	2	535.3273315429688	2	535.329476	1068.6444	-1.2502	-0.00066929	-2.9485	-0.0015784	-4.1988	-0.0022477	535.3279070397938	59.315	2.607	56.535	55.888	58.495	-2.7801					134	49	4	0	0	0	0.5811	1	4318	4318		34.173	0.25091	1	990330	+		14600	20230	11851	11867	16089	16089					0.11282318847838724
GPVRIKTWI	9	Unmodified	_GPVRIKTWI_					0	0	0			REV__nc|ENSG00000151388|P58397-3|ADAMTS12	REV__nc|ENSG00000151388|P58397-3|ADAMTS12	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.3289794921875	2	535.329476	1068.6444	-0.57138	-0.00030588	-4.038	-0.0021617	-4.6094	-0.0024675	535.3273569849397	60.036	1.8717	56.606	56.259	58.131	-3.43					104	37	4	0	0	0	0.50149	1	4065	4065		42.396	7.2441	1	1821400	+		14601	20230	11851	11867	16090	16090					0.11282318847838724
GPVRRPKKARW	11	Unmodified	_GPVRRPKKARW_					0	0	0			REV__ENST00000532353.1_1_6:111919081-111919366:+|nuORF	REV__ENST00000532353.1_1_6:111919081-111919366:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.91546630859375	3	450.945828	1349.81566	0.72274	0.00032592	-0.24188	-0.00010907	0.48086	0.00021684	450.9456254064345	38.985	0.49707	36.058	35.898	36.395	-2.9264					15	9	2	0	0	0	0.026221	1	1571	1571		25.126	10.432	1	14240	+		14602	27234	11852	11868	16091	16091					0.15474068939010976
GPYLVPVSTPY	11	Unmodified	_GPYLVPVSTPY_					0	0	0			REV__ENSG00000134107|ENST00000256495|BHLHE40	REV__ENSG00000134107|ENST00000256495|BHLHE40	MULTI-MSMS	OvCa9_classI_Rep4_	4	596.81884765625	2	596.816064	1191.61758	-0.18377	-0.00010967	0.36478	0.0002177	0.18101	0.00010803	596.8162215131191	55.836	1.824	52.541	51.906	53.73	-3.2944					104	35	4	0	0	0	0.68021	1	3526	3526		36.447	1.2947	1	1109000	+		14603	19173	11853	11869	16092	16092					0.02943165446004059
GQAAHLGR	8	Unmodified	_GQAAHLGR_					0	0	0		ENST00000498682.2_3_7:150104681-150105308:+|nuORF	ENST00000498682.2_3_7:150104681-150105308:+|nuORF	ENST00000498682.2_3_7:150104681-150105308:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	405.7461242675781	2	405.222469	808.430384	1.1454	0.00046412	-1.7268	-0.00069973	-0.58143	-0.00023561	405.22264673199373	74.459	0.61829	71.228	70.816	71.434	-3.2308					15	12	2	0	0	0	0.028476	1	5816	5816		55.504	20.303	1	13865			14604	12831	11854	11870	16093	16093					0.01850611471809316
GQACGHYQV	9	Unmodified	_GQACGHYQV_					0	0	0			REV__ENST00000464828.1_1_3:10975690-10977074:+|nuORF	REV__ENST00000464828.1_1_3:10975690-10977074:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	481.7127990722656	2	481.711076	961.4076	-1.0758	-0.00051823	4.2284	0.0020369	3.1526	0.0015186	481.71299416143177	34.563	0.84613	34.563	34.351	35.198	0					38	17	4	0	0	0	0.27546	1	1670	1670		65.803	10.299	1	982030	+		14605	26159	11855	11871	16094	16094					-0.07464775707990157
GQADLATKV	9	Unmodified	_GQADLATKV_					0	0	0		ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	MULTI-MSMS	OvCa99_classI_Rep5	1	451.7534484863281	2	451.750724	901.486896	-0.14913	-6.7368E-05	0.38608	0.00017441	0.23695	0.00010704	451.75070254178104	54.842	0.68303	54.842	54.59	55.273	0					36	15	4	0	0	0	0.14445	1	4458	4458		85.862	19.433	1	1719900			14606	8129	11856	11872	16095	16095					0.03221194517800541
GQAEPQQRI	9	Unmodified	_GQAEPQQRI_					0	0	0		nc|ENSG00000142273|Q9ULV8-2|CBLC;CBLC|p.S400Vfs*55|1|0.93|ENSG00000142273|chr19:44793534-44793534|A/-|frameshift_variant;ENSG00000142273|ENST00000647358|CBLC	nc|ENSG00000142273|Q9ULV8-2|CBLC	nc|ENSG00000142273|Q9ULV8-2|CBLC	MULTI-MSMS	OvCa99_classI_Rep5	1	513.769775390625	2	513.76998	1025.52541	-0.53985	-0.00027736	0.60969	0.00031324	0.069834	3.5879E-05	513.7701597356931	41.354	0.79325	41.354	41.104	41.897	0					45	17	4	0	0	0	0.35694	1	2570	2570		56.434	8.7765	1	720770			14607	189	11857	11873	16096	16096					0.013665001523349929
GQAGGKLHI	9	Unmodified	_GQAGGKLHI_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion;ENST00000472129.3_1_17:57725612-57733400:+|nuORF	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa99_classI_Rep5	1	440.7528991699219	2	440.753601	879.49265	0.90224	0.00039766	-1.3648	-0.00060152	-0.46253	-0.00020386	440.7530254847158	40.732	1.8562	40.732	40.386	42.242	0					112	41	5	0	0	0	0.079296	2	2476	2476;2500		102.77	22.834	1	19780000			14608	4906	11858	11874	16097;16098	16097					0.048083378201340565
GQAGGKLHII	10	Unmodified	_GQAGGKLHII_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion;ENST00000472129.3_1_17:57725612-57733400:+|nuORF	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa99_classI_Rep5	1	497.2972717285156	2	497.295633	992.576714	0.034807	1.731E-05	-0.65805	-0.00032725	-0.62324	-0.00030994	497.2952421841333	57.414	0.51515	57.414	57.093	57.609	0					30	11	4	0	0	0	0.28845	1	4826	4826		82.241	20.133	1	1673700			14609	4906	11859	11875	16099	16099					0.0801286891704649
GQALQRVGI	9	Unmodified	_GQALQRVGI_					0	0	0		nc|ENSG00000172236|Q15661-2|TPSAB1;ENSG00000197253|ENST00000606293|TPSB2;ENSG00000172236|ENST00000338844|TPSAB1	nc|ENSG00000172236|Q15661-2|TPSAB1	nc|ENSG00000172236|Q15661-2|TPSAB1	MULTI-MSMS	OvCa99_classI_Rep5	1	471.2812805175781	2	471.279983	940.545414	0.089565	4.221E-05	0.41339	0.00019482	0.50296	0.00023703	471.27999107566586	68.806	0.78361	68.806	68.564	69.347	0					33	18	3	0	0	0	0.031958	1	6509	6509		133.81	36.34	1	2675000			14610	7278	11860	11876	16100	16100					0.0727629588294576
GQAPGVVRV	9	Unmodified	_GQAPGVVRV_					0	0	0		ENSG00000132622|ENST00000254963|HSPA12B	ENSG00000132622|ENST00000254963|HSPA12B	ENSG00000132622|ENST00000254963|HSPA12B	MULTI-MSMS	OvCa99_classI_Rep5	1	441.7625427246094	2	441.761426	881.5083	0.72954	0.00032228	-0.62897	-0.00027786	0.10057	4.4427E-05	441.76104887995893	58.953	0.56937	58.953	58.734	59.304	0					32	14	4	0	0	0	0.10363	1	5033	5033		96.19	10.831	1	7080000			14611	4153	11861	11877	16101	16101					0.06280624337182417
GQARIVLL	8	Unmodified	_GQARIVLL_					0	0	0			REV__ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	REV__ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	436.2491760253906	2	435.281995	868.549437	0.56595	0.00024635	-0.38407	-0.00016718	0.18188	7.917E-05	435.2816736017902	51.218	0.63415	51.218	50.993	51.627	0					28	14	3	0	0	0	0.028476	1	3911	3911		21.702	0	1	704490	+		14612	15573	11862	11878	16102	16102					0.10990385376669565
GQDGREELTL	10	Unmodified	_GQDGREELTL_					0	0	0			REV__ENSG00000196182|ENST00000373132|STK40	REV__ENSG00000196182|ENST00000373132|STK40	MULTI-SECPEP	OvCa9_classI_Rep4_	4	558.3330688476562	2	559.277835	1116.54112	1.2663	0.0007082	1.99	0.0011129	3.2562	0.0018211	559.2789983325443	90.179	1.3666	87.604	87.05	88.417	-2.575					40	26	2	0	0	0	0.026782	1	7801	7801		37.812	3.639	1	53850	+		14613	22795	11863	11879	16103	16103					-0.012492581212882214
GQDINPQRV	9	Unmodified	_GQDINPQRV_					0	0	0		ENST00000554523.5_1_14:68228796-68282710:-|nuORF;nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26;ENST00000557366.5_1_14:68270819-68282710:-|nuORF;nc|ENSG00000072121|Q68DK2-4|ZFYVE26;ENST00000557407.1_1_14:68264347-68282710:-|nuORF;ZFYVE26|p.I1446Tfs*5|1|0.04|ENSG00000072121|chr14:67782815-67782816|-/TAGAAAAAATG|frameshift_variant;ZFYVE26|p.E1561Nfs*17|1|0.09|ENSG00000072121|chr14:67778242-67778242|C/-|frameshift_variant;ZFYVE26-NEMF|1|fusion	ENST00000554523.5_1_14:68228796-68282710:-|nuORF	ENST00000554523.5_1_14:68228796-68282710:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	513.7717895507812	2	513.76998	1025.52541	-0.84696	-0.00043514	1.6853	0.00086584	0.83832	0.0004307	513.7708132255846	50.416	0.48388	50.416	50.201	50.685	0					29	10	3	0	0	0	0.29519	1	3830	3830		63.534	19.157	1	672320			14614	1465	11864	11880	16104	16104					0.013665001523349929
GQDKNYWKK	9	Unmodified	_GQDKNYWKK_					0	0	0		tr|A0A7D6VR63|A0A7D6VR63_9CLOTGlucanaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00260PE=3SV=1	tr|A0A7D6VR63|A0A7D6VR63_9CLOTGlucanaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00260PE=3SV=1	tr|A0A7D6VR63|A0A7D6VR63_9CLOTGlucanaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00260PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8027954101562	2	583.80128	1165.58801	0.97841	0.0005712	1.9394	0.0011322	2.9178	0.0017034	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.67509	1	1343	1343		23.042	3.0457	1	155970			14615	34899	11865	11881	16105	16105					0.011836462205110365
GQDRVRVAV	9	Unmodified	_GQDRVRVAV_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;COL6A3|p.T1393Cfs*9|1|0.09|ENSG00000163359|chr2:237371828-237371840|GCTCCCGGAAGGT/-|frameshift_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	500.2878723144531	2	500.28834	998.562127	0.18203	9.1067E-05	-1.0223	-0.00051142	-0.84023	-0.00042035	500.2877970444373	46.176	1.1862	46.176	45.844	47.03	0					61	26	4	0	0	0	0.51865	2	3235	3235;3259		40.778	1.5253	1	6014500			14616	6293	11866	11882	16106;16107	16106					0.06278796768901884
GQDTPLPVTSL	11	Unmodified	_GQDTPLPVTSL_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MULTI-MSMS	OvCa99_classI_Rep5	1	564.3019409179688	2	564.300778	1126.587	3.2073	0.0018099	-1.8096	-0.0010212	1.3977	0.00078871	564.2996539792841	99.187	0.56969	99.187	98.877	99.447	0					33	13	3	0	0	0	0.51772	1	10955	10955		52.167	2.1337	1	5896800			14617	5205	11867	11883	16108	16108					0.028773870609711594
GQDVGRYQV	9	Unmodified	_GQDVGRYQV_					0	0	0		ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	511.2582092285156	2	511.256705	1020.49886	-0.20243	-0.00010349	-0.55626	-0.00028439	-0.75869	-0.00038789	511.25645894132015	56.241	1.844	56.241	55.888	57.732	0					111	43	5	0	0	0	0.0094273	3	4631	4631;4660;4691		171.53	78.389	1	63407000			14618	7893	11868	11884	16109;16110;16111	16109					-0.010571887390028678
GQERAPELP	9	Unmodified	_GQERAPELP_					0	0	0			REV__ENSG00000129474|ENST00000262713|AJUBA	REV__ENSG00000129474|ENST00000262713|AJUBA	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.3338623046875	2	498.759081	995.503609	-0.85882	-0.00042835	-3.991	-0.0019905	-4.8498	-0.0024189	498.7577218783712	134.48	0.54347	133.36	133.11	133.65	-1.1226					16	10	2	0	0	0	0.027453	1	10812	10812		30.318	4.8675	1	10093	+		14619	18900	11869	11885	16112	16112					0.005676954037426185
GQERAPELP	9	Unmodified	_GQERAPELP_					0	0	0			REV__ENSG00000129474|ENST00000262713|AJUBA	REV__ENSG00000129474|ENST00000262713|AJUBA	MULTI-MATCH	OvCa9_classI_Rep2	2		2	498.759081	995.503609	-0.014853	-7.4078E-06	-0.47196	-0.0002354	-0.48681	-0.0002428	498.7576394656791	133.6	0.59236	133.37	133.16	133.76	-0.22696	0.0074387	0.0041241	NaN	30.318	17	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13702	+		14620	18900	11869	11885							0.005676954037426185
GQFIARAV	8	Unmodified	_GQFIARAV_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	OvCa99_classI_Rep5	1	431.2522888183594	2	431.250695	860.486836	0.5495	0.00023697	-0.66638	-0.00028738	-0.11688	-5.0405E-05	431.2502782167375	66.719	1.2705	66.719	66.452	67.723	0					59	31	4	0	0	0	0.2826	1	6192	6192		110.34	24.978	1	4357800			14621	5511	11870	11886	16113	16113					0.051012393084647556
GQFIGPHRI	9	Unmodified	_GQFIGPHRI_					0	0	0		ENST00000526390.5_1_12:104683270-104742190:+|nuORF;nc|ENSG00000198431|Q16881-7|TXNRD1;nc|ENSG00000198431|Q16881-5|TXNRD1;ENST00000529546.5_1_12:104682722-104742190:+|nuORF;nc|ENSG00000198431|Q16881-2|TXNRD1;nc|ENSG00000198431|Q16881-4|TXNRD1;ENST00000524698.5_2_12:104681148-104742190:+|nuORF;ENST00000526950.1_1_12:104703637-104742190:+|nuORF;nc|ENSG00000198431|Q16881-3|TXNRD1;ENST00000526691.5_1_12:104680955-104742190:+|nuORF;nc|ENSG00000198431|Q16881-6|TXNRD1;ENSG00000198431|ENST00000525566|TXNRD1;ENST00000525566.5_2_12:104609571-104742190:+|nuORF	ENST00000526390.5_1_12:104683270-104742190:+|nuORF	ENST00000526390.5_1_12:104683270-104742190:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	512.789794921875	2	512.787976	1023.5614	0.12759	6.5428E-05	-0.49051	-0.00025153	-0.36292	-0.0001861	512.7877213537482	58.172	0.75426	58.172	57.818	58.572	0					54	16	5	0	0	0	0.19758	1	4948	4948		76.774	13.468	1	18828000			14622	13215	11871	11887	16114	16114					0.050560021198293725
GQFKDIITKV	10	Unmodified	_GQFKDIITKV_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000070371|ENST00000427926|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa99_classI_Rep5	1	574.83837890625	2	574.837331	1147.66011	1.2648	0.00072707	-0.37376	-0.00021485	0.89107	0.00051222	574.8370651342301	81.675	3.5101	81.675	81.12	84.631	0					269	83	6	0	0	0	6.3833E-06	7	8458	8399;8428;8458;8488;8518;8544;8569		191.45	64.202	1	146010000			14623	4906;1426	11872	11888	16115;16116;16117;16118;16119;16120;16121	16117					0.09218560574186085
GQFKGLVKA	9	Unmodified	_GQFKGLVKA_					0	0	0		nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12;nc|ENSG00000052749|Q5JTH9-2|RRP12;ENST00000491313.5_1_10:99116853-99127090:-|nuORF;ENST00000479481.5_1_10:99116853-99131081:-|nuORF	nc|ENSG00000052749|Q5JTH9-3|RRP12	nc|ENSG00000052749|Q5JTH9-3|RRP12	MULTI-MSMS	OvCa99_classI_Rep5	1	474.28887939453125	2	474.287277	946.560001	-0.01243	-5.8956E-06	0.054294	2.5751E-05	0.041864	1.9856E-05	474.28717899614793	51.354	1.0497	51.354	51.12	52.17	0					52	24	4	0	0	0	0.068524	1	3955	3955		108.09	41.658	1	2580000			14624	1193	11873	11889	16122	16122					0.08458368031097052
GQFKTYAI	8	Unmodified	_GQFKTYAI_					0	0	0		ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	ENSG00000171858|ENST00000343986|RPS21	MULTI-MSMS	OvCa99_classI_Rep5	1	464.2523498535156	2	464.25036	926.486168	0.75697	0.00035142	0.17389	8.0729E-05	0.93086	0.00043215	464.25039684650665	74.384	1.8596	74.384	74.176	76.036	0					108	46	4	0	0	0	0.22496	2	7366	7366;7397		120.62	8.9727	1	43537000			14625	7240	11874	11890	16123;16124	16123					0.01998399868762135
GQFPVSFEVD	10	Unmodified	_GQFPVSFEVD_					0	0	0			REV__ENST00000506067.1_1_9:99660395-99681090:-|nuORF	REV__ENST00000506067.1_1_9:99660395-99681090:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	562.7664794921875	2	562.766571	1123.51859	0.06028	3.3923E-05	-0.72117	-0.00040585	-0.66089	-0.00037193	562.7660370416633	41.626	6.1897	41.626	40.795	46.985	0					363	141	3	0	0	0	0.50999	1	2852	2852		52.937	1.6012	1	1452500	+		14626	26884	11875	11891	16125	16125					-0.03822857518912315
GQFRNRVI	8	Unmodified	_GQFRNRVI_					0	0	0		ENSG00000112936|ENST00000313164|C7	ENSG00000112936|ENST00000313164|C7	ENSG00000112936|ENST00000313164|C7	MULTI-SECPEP	OvCa9_classI_Rep3	3	495.32403564453125	2	495.2856	988.556647	0.27497	0.00013619	2.4033	0.0011903	2.6783	0.0013265	495.2866249346857	106.11	0.83301	104.77	104.2	105.03	-1.3482					23	15	2	0	0	0	0.028476	1	7412	7412		24.203	0	1	20173			14627	2937	11876	11892	16126	16126					0.06191117977084559
GQFRNRVI	8	Unmodified	_GQFRNRVI_					0	0	0		ENSG00000112936|ENST00000313164|C7	ENSG00000112936|ENST00000313164|C7	ENSG00000112936|ENST00000313164|C7	MULTI-MATCH	OvCa9_classI_Rep2	2		2	495.2856	988.556647	-0.16816	-8.3287E-05	2.0507	0.0010157	1.8825	0.00093239	495.2861743080925	105.34	0.59698	104.9	104.6	105.2	-0.43642	0.045728	-0.00053022	NaN	17.365	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18513			14628	2937	11876	11892							0.06191117977084559
GQFRNRVI	8	Unmodified	_GQFRNRVI_					0	0	0		ENSG00000112936|ENST00000313164|C7	ENSG00000112936|ENST00000313164|C7	ENSG00000112936|ENST00000313164|C7	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	495.2856	988.556647	-1.0353	-0.00051277	3.1527	0.0015615	2.1174	0.0010487	495.28732417010514	106.78	0.68013	104.9	104.54	105.22	-1.8785	0.044652	0.00056145	NaN	17.365	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24931			14629	2937	11876	11892							0.06191117977084559
GQFYTKAL	8	Unmodified	_GQFYTKAL_					0	0	0		tr|A0A7D6VSH1|A0A7D6VSH1_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16495PE=4SV=1	tr|A0A7D6VSH1|A0A7D6VSH1_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16495PE=4SV=1	tr|A0A7D6VSH1|A0A7D6VSH1_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16495PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	464.25421142578125	2	464.25036	926.486168	0.75697	0.00035142	0.17389	8.0729E-05	0.93086	0.00043215	464.25039684650665	74.384	1.8596	74.384	74.176	76.036	0					108	46	4	0	0	0	0.6345	1	7337	7337		56.721	0	1	43537000			14630	35024	11877	11893	16127	16127					0.01998399868762135
GQGDQTIQELL	11	Unmodified	_GQGDQTIQELL_					0	0	0			REV__ENST00000423354.1_1_2:43459935-43460380:+|nuORF	REV__ENST00000423354.1_1_2:43459935-43460380:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	601.3084716796875	2	601.306592	1200.59863	3.2383	0.0019472	0.24621	0.00014805	3.4845	0.0020953	601.30656603052	121.18	1.2559	120.15	119.86	121.11	-1.0271					47	23	5	0	0	0	0.56391	1	9277	9277		47.96	0	1	243140	+		14631	25629	11878	11894	16128	16128					0.006355840842843463
GQGGFTGFLV	10	Unmodified	_GQGGFTGFLV_					0	0	0		nc|ENSG00000165271|Q9H6R4-3|NOL6;NOL6|p.W912Lfs*20|1|0.05|ENSG00000165271|chr9:33464924-33464925|-/TCTTTAAATGGGTGACCTGGGGGAG|frameshift_variant;nc|ENSG00000165271|Q9H6R4-2|NOL6;nc|ENSG00000165271|Q9H6R4-4|NOL6;ENSG00000165271|ENST00000297990|NOL6;ENST00000464829.5_1_9:33462182-33469499:-|nuORF	nc|ENSG00000165271|Q9H6R4-3|NOL6	nc|ENSG00000165271|Q9H6R4-3|NOL6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.2720642089844	2	491.753267	981.491981	0.17048	8.3833E-05	-3.9065	-0.001921	-3.736	-0.0018372	491.7510818168449	39.297	0.7946	36.37	36.146	36.941	-2.9264					23	15	2	0	0	0	0.026822	1	1580	1580		23.042	0	1	32600			14632	6542	11879	11895	16129	16129					0.0004949838044012722
GQGHMALFI	9	Unmodified	_GQGHMALFI_					0	0	0		SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant;nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant	SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	487.2508850097656	2	487.249837	972.485122	1.1075	0.00053963	1.141	0.00055594	2.2485	0.0010956	487.2502605241177	102.03	0.98427	102.03	101.69	102.68	0					50	22	3	0	0	0	0.19716	1	11380	11380		76.847	13.868	1	6443200			14633	1794	11880	11896	16130	16130					-0.0022213777180013494
GQGKLEQLLI	10	Unmodified	_GQGKLEQLLI_					0	0	0		tr|A0A7D6VNZ9|A0A7D6VNZ9_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20455PE=4SV=1	tr|A0A7D6VNZ9|A0A7D6VNZ9_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20455PE=4SV=1	tr|A0A7D6VNZ9|A0A7D6VNZ9_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20455PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	549.8294677734375	2	549.829506	1097.64446	2.0083	0.0011042	-0.6702	-0.0003685	1.3381	0.00073573	549.8291049728731	79.959	3.6419	79.959	79.436	83.078	0					224	87	5	0	0	0	0.1722	1	8330	8330		98.629	5.4339	1	44234000			14634	34740	11881	11897	16131	16131					0.09954274057213297
GQGKLEQLLI	10	Unmodified	_GQGKLEQLLI_					0	0	0		tr|A0A7D6VNZ9|A0A7D6VNZ9_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20455PE=4SV=1	tr|A0A7D6VNZ9|A0A7D6VNZ9_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20455PE=4SV=1	tr|A0A7D6VNZ9|A0A7D6VNZ9_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20455PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	549.829833984375	2	549.829506	1097.64446	0.80067	0.00044023	-1.6255	-0.00089376	-0.82486	-0.00045353	549.8286388284898	82.164	4.5681	80.515	79.767	84.335	-1.6485					186	90	5	0	0	0	6.8865E-06	6	6987	6971;6987;7005;7011;7030;7037		190.52	9.3043	1	3206100			14635	34740	11881	11897	16132;16133;16134;16135;16136;16137	16133					0.09954274057213297
GQGKLEQLLI	10	Unmodified	_GQGKLEQLLI_					0	0	0		tr|A0A7D6VNZ9|A0A7D6VNZ9_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20455PE=4SV=1	tr|A0A7D6VNZ9|A0A7D6VNZ9_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20455PE=4SV=1	tr|A0A7D6VNZ9|A0A7D6VNZ9_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20455PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	549.829833984375	2	549.829506	1097.64446	-1.4364	-0.00078979	0.25665	0.00014112	-1.1798	-0.00064867	549.8296566613044	82.508	4.9298	80.211	79.735	84.665	-2.2963					199	100	5	0	0	0	0.0012615	5	4686	4661;4686;4700;4706;4724		176.09	9.3043	1	6178900			14636	34740	11881	11897	16138;16139;16140;16141;16142	16139					0.09954274057213297
GQGKLEQLLI	10	Unmodified	_GQGKLEQLLI_					0	0	0		tr|A0A7D6VNZ9|A0A7D6VNZ9_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20455PE=4SV=1	tr|A0A7D6VNZ9|A0A7D6VNZ9_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20455PE=4SV=1	tr|A0A7D6VNZ9|A0A7D6VNZ9_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20455PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.8301391601562	2	549.829506	1097.64446	-0.33948	-0.00018666	-0.54041	-0.00029713	-0.8799	-0.00048379	549.8292171061989	83.08	2.9395	80.397	79.733	82.673	-2.6829					155	60	5	0	0	0	0.0012615	3	6889	6889;6925;6950		176.09	14.21	1	5921500			14637	34740	11881	11897	16143;16144;16145	16143					0.09954274057213297
GQGKVASKI	9	Unmodified	_GQGKVASKI_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.H2029Qfs*32|1|0.9|ENSG00000196924|chrX:154353130-154353140|TGCTGGCCACG/-|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OvCa99_classI_Rep5	1	444.2692565917969	2	444.269084	886.523616	0.81159	0.00036056	-1.1336	-0.00050364	-0.32206	-0.00014308	444.26854319241806	30.508	1.3731	30.508	30.136	31.509	0					53	27	4	0	0	0	0.060996	1	1174	1174		112.41	9.6376	1	3037600			14638	8659	11882	11898	16146	16146					0.07581491134385487
GQGLIVDIDN	10	Unmodified	_GQGLIVDIDN_					0	0	0			REV__tr|A0A7D6ZX11|A0A7D6ZX11_9CLOTL-threoninedehydratasecatabolicTdcBOS=ClostridiumintestinaleOX=36845GN=HZF06_20320PE=3SV=1	REV__tr|A0A7D6ZX11|A0A7D6ZX11_9CLOTL-threoninedehydratasecatabolicTdcBOS=ClostridiumintestinaleOX=36845GN=HZF06_20320PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.8255004882812	2	522.272021	1042.52949	1.7453	0.00091155	2.498	0.0013047	4.2434	0.0022162	522.2728421642762	122.06	0.42086	122.06	121.71	122.13	0					10	8	2	0	0	0	0.026782	1	14011	14011		45.972	7.1661	1	23028	+		14639	32309	11883	11899	16147	16147					0.009925448553985916
GQGPGVRVRD	10	Unmodified	_GQGPGVRVRD_					0	0	0		ENSG00000166924|ENST00000300179|NYAP1;nc|ENSG00000166924|Q6ZVC0-2|NYAP1	ENSG00000166924|ENST00000300179|NYAP1	ENSG00000166924|ENST00000300179|NYAP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.7846069335938	2	520.783422	1039.55229	0.47274	0.00024619	-1.659	-0.00086398	-1.1863	-0.00061779	520.7836828713865	140.65	1.8116	139.15	138.76	140.57	-1.4952					71	34	4	0	0	0	0.75313	1	13719	13719		24.519	0.99649	1	123170			14640	6735	11884	11900	16148	16148					0.03409608763513461
GQGPSHLSV	9	Unmodified	_GQGPSHLSV_					0	0	0		UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.Q2012Sfs*13|1|0.03|ENSG00000127481|chr1:19156309-19156310|-/A|frameshift_variant;UBR4|p.M2075Wfs*25|1|0.07|ENSG00000127481|chr1:19155519-19155519|A/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF	UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	441.2286071777344	2	441.227417	880.44028	0.50776	0.00022404	-0.54866	-0.00024208	-0.040905	-1.8048E-05	441.2270547862765	52.046	0.77505	52.046	51.747	52.522	0					43	17	4	0	0	0	0.14998	1	4049	4049		84.916	21.609	1	2294500			14641	3833	11885	11901	16149	16149					-0.004722453134718307
GQGQVHLRL	9	Unmodified	_GQGQVHLRL_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	OvCa99_classI_Rep5	1	504.291748046875	2	504.290882	1006.56721	0.051591	2.6017E-05	-0.030767	-1.5515E-05	0.020824	1.0501E-05	504.29082892401374	57.198	0.64734	57.198	56.918	57.566	0					30	14	3	0	0	0	0.068524	1	4790	4790		108.09	6.4868	1	1500900			14642	4792	11886	11902	16150	16150					0.06419100631501351
GQGQVLLRA	9	Unmodified	_GQGQVLLRA_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENST00000548142.1_1_12:56532791-56536718:+|nuORF	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	OvCa99_classI_Rep5	1	471.28192138671875	2	471.279983	940.545414	0.44066	0.00020767	-0.50083	-0.00023603	-0.060177	-2.836E-05	471.27968099032995	63.067	0.55471	63.067	62.86	63.414	0					26	13	2	0	0	0	0.091859	1	5647	5647		99.375	6.1795	1	3129300			14643	4792	11887	11903	16151	16151					0.0727629588294576
GQGRGAPGAR	10	Unmodified	_GQGRGAPGAR_					0	0	0			REV__ENST00000497842.6_1_17:15903346-15927855:+|nuORF	REV__ENST00000497842.6_1_17:15903346-15927855:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	464.27935791015625	2	463.749382	925.484211	-1.1405	-0.0005289	4.1467	0.001923	3.0062	0.0013941	463.7511655550288	84.044	1.6155	81.783	81.478	83.094	-2.261					56	33	3	0	0	0	0.026734	1	4812	4812		31.53	0	1	143470	+		14644	26785	11888	11904	16152	16152					0.018487839035174147
GQGRIILKA	9	Unmodified	_GQGRIILKA_					0	0	0		nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2;MSH2|p.G751Efs*12|1|0.6|ENSG00000095002|chr2:47478311-47478311|G/-|frameshift_variant;MSH2|p.E626D|1|0.07|ENSG00000095002|chr2:47475143-47475143|G/T|missense_variant	nc|ENSG00000095002|P43246-2|MSH2	nc|ENSG00000095002|P43246-2|MSH2	MULTI-MSMS	OvCa99_classI_Rep5	1	478.306640625	2	478.306001	954.597449	-0.33484	-0.00016016	-0.046593	-2.2286E-05	-0.38143	-0.00018244	478.3059435913573	48.417	1.3014	48.417	48.116	49.418	0					60	29	4	0	0	0	0.10363	2	3571	3544;3571		96.19	32.884	1	11051000			14645	1918	11889	11905	16153;16154	16154					0.11833459296701676
GQGRPQQAV	9	Unmodified	_GQGRPQQAV_					0	0	0		ENSG00000173442|ENST00000309295|EHBP1L1	ENSG00000173442|ENST00000309295|EHBP1L1	ENSG00000173442|ENST00000309295|EHBP1L1	MULTI-MSMS	OvCa99_classI_Rep5	1	470.7515869140625	2	470.75159	939.488627	0.19227	9.0513E-05	-0.12976	-6.1085E-05	0.062512	2.9427E-05	470.7512367918838	31.8	0.49649	31.8	31.658	32.154	0					22	9	4	0	0	0	0.31747	1	1340	1340		60.972	7.6205	1	309560			14646	7376	11890	11906	16155	16155					0.016462483264263028
GQGSAQSDPP	10	Unmodified	_GQGSAQSDPP_					0	0	0			REV__nc|ENSG00000087589|Q9NQ75-2|CASS4	REV__nc|ENSG00000087589|Q9NQ75-2|CASS4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.2991027832031	2	472.209421	942.404288	-0.29416	-0.00013891	-3.4615	-0.0016346	-3.7557	-0.0017735	472.20798228350293	43.726	0.2044	40.718	40.589	40.793	-3.0074					5	3	2	0	0	0	0.02661	1	2111	2111		49.442	11.63	1	15294	+		14647	17169	11891	11907	16156	16156					-0.0692174728100099
GQGWNLGATL	10	Unmodified	_GQGWNLGATL_					0	0	0		ENST00000379825.6_2_9:32987573-32987645:-|nuORF	ENST00000379825.6_2_9:32987573-32987645:-|nuORF	ENST00000379825.6_2_9:32987573-32987645:-|nuORF	MSMS	OvCa99_classI_Rep5	1	508.7634582519531	2	508.761623	1015.50869	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.408	1	73.408	72.908	73.908	0								0	0	0	0.088001	1	7201	7201		98.629	10.452	1				14648	11132	11892	11908	16157	16157					0.001559992663715093
GQGYYLGKP	9	Unmodified	_GQGYYLGKP_					0	0	0		tr|A0A7D6ZHG5|A0A7D6ZHG5_9CLOTGGDEFdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23055PE=4SV=1	tr|A0A7D6ZHG5|A0A7D6ZHG5_9CLOTGGDEFdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23055PE=4SV=1	tr|A0A7D6ZHG5|A0A7D6ZHG5_9CLOTGGDEFdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23055PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.2720947265625	2	491.753267	981.491981	-0.34459	-0.00016945	-3.8543	-0.0018954	-4.1989	-0.0020648	491.7512726804603	39.146	0.44551	36.436	36.261	36.706	-2.7097					12	8	2	0	0	0	0.027462	1	1866	1866		29.15	0	1	14839			14649	35577	11893	11909	16158	16158					0.0004949838042875854
GQHFPVIAAN	10	Unmodified	_GQHFPVIAAN_					0	0	0		nc|ENSG00000090905|Q8NDV7-6|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A;TNRC6A|p.E265Gfs*32|1|0.09|ENSG00000090905|chr16:24789436-24789436|A/-|frameshift_variant	nc|ENSG00000090905|Q8NDV7-6|TNRC6A	nc|ENSG00000090905|Q8NDV7-6|TNRC6A	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.3021850585938	2	527.277441	1052.54033	0.37878	0.00019972	1.8939	0.00099861	2.2727	0.0011983	527.2772321096776	63.407	0.31131	63.407	63.296	63.607	0					13	7	2	0	0	0	0.026734	1	5719	5719		39.253	0	1	421110			14650	1851	11894	11910	16159	16159					0.016159920203108413
GQHGGFVVTV	10	Unmodified	_GQHGGFVVTV_					0	0	0		ENST00000470356.3_1_19:3572947-3573972:+|nuORF;ENST00000488973.6_1_19:3572986-3573972:+|nuORF;nc|ENSG00000064961|Q9P0W2-3|HMG20B;ENSG00000064961|ENST00000333651|HMG20B	ENST00000470356.3_1_19:3572947-3573972:+|nuORF	ENST00000470356.3_1_19:3572947-3573972:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	500.7658996582031	2	500.764166	999.513779	2.141	0.0010721	-0.60367	-0.0003023	1.5373	0.00076982	500.763697078554	82.735	0.59848	82.735	82.479	83.078	0					30	13	3	0	0	0	0.41408	1	8581	8581		66.429	4.3219	1	951290			14651	1310	11895	11911	16160	16160					0.014003031290030776
GQHKDAYQV	9	Unmodified	_GQHKDAYQV_					0	0	0		nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;ENSG00000166181|ENST00000531273|API5;ENST00000530300.1_1_11:43333659-43340360:+|nuORF	nc|ENSG00000166181|Q9BZZ5-3|API5	nc|ENSG00000166181|Q9BZZ5-3|API5	MULTI-MSMS	OvCa99_classI_Rep5	1	523.2562866210938	2	523.256705	1044.49886	-0.34472	-0.00018038	-0.5054	-0.00026445	-0.85012	-0.00044483	523.2564216155795	32.82	1.0301	32.82	32.602	33.632	0					51	20	5	0	0	0	0.070405	1	1456	1456		107.01	30.233	1	2130100			14652	6648	11896	11912	16161	16161					-0.021611887390236006
GQHSISYTL	9	Unmodified	_GQHSISYTL_					0	0	0		nc|ENSG00000174516|Q8N2H9-4|PELI3;nc|ENSG00000174516|Q8N2H9-3|PELI3;ENSG00000139946|ENST00000267460|PELI2;nc|ENSG00000174516|Q8N2H9-2|PELI3;ENSG00000174516|ENST00000320740|PELI3	nc|ENSG00000174516|Q8N2H9-4|PELI3	nc|ENSG00000174516|Q8N2H9-4|PELI3	MULTI-MSMS	OvCa99_classI_Rep5	1	503.255859375	2	503.253631	1004.49271	0.49878	0.00025101	-1.4049	-0.00070701	-0.90609	-0.00045599	503.2528904182563	72.215	0.53299	72.215	72	72.533	0					21	12	2	0	0	0	0.16562	1	7014	7014		82.241	7.9855	1	4972500			14653	4812	11897	11913	16162	16162					-0.009357069705288268
GQIFITKAL	9	Unmodified	_GQIFITKAL_					0	0	0		nc|ENSG00000176273|Q2M3R5-2|SLC35G1;ENSG00000176273|ENST00000427197|SLC35G1	nc|ENSG00000176273|Q2M3R5-2|SLC35G1	nc|ENSG00000176273|Q2M3R5-2|SLC35G1	MULTI-SECPEP	OvCa9_classI_Rep3	3	495.322998046875	2	495.80276	989.590967	0.26097	0.00012939	-0.43481	-0.00021558	-0.17384	-8.6189E-05	495.80227944309485	105.18	1.1981	103.83	103.68	104.87	-1.3482					28	22	2	0	0	0	0.027462	1	7391	7391		20.947	6.0821	1	22755			14654	7597	11898	11914	16163	16163					0.09575521345323068
GQIGPLGMYGP	11	Unmodified	_GQIGPLGMYGP_					0	0	0			REV__nc|ENSG00000124749|Q96P44-3|COL21A1	REV__nc|ENSG00000124749|Q96P44-3|COL21A1	MULTI-MSMS	OvCa99_classI_Rep5	1	545.2777099609375	2	545.273509	1088.53247	1.5589	0.00085004	3.2636	0.0017796	4.8225	0.0026296	545.2753300190966	127.5	1.7876	127.5	127.05	128.84	0					75	38	2	0	0	0	0.40225	1	14731	14731		60.972	0.67798	1	11278000	+		14655	18703	11899	11915	16164	16164					-0.008259032914565978
GQIKEVERI	9	Unmodified	_GQIKEVERI_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000070371|ENST00000427926|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa99_classI_Rep5	1	536.3123168945312	2	536.31148	1070.60841	-0.30176	-0.00016184	-0.58882	-0.00031579	-0.89058	-0.00047763	536.3112031522287	50.929	1.1959	50.929	50.551	51.747	0					99	27	5	0	0	0	0.018335	3	3898	3898;3922;3958		148.99	40.899	1	53703000			14656	4906;1426	11900	11916	16165;16166;16167	16165					0.07592816880332975
GQIKIWEV	8	Unmodified	_GQIKIWEV_					0	0	0		ENSG00000176871|ENST00000315436|WSB2;nc|ENSG00000176871|Q9NYS7-2|WSB2	ENSG00000176871|ENST00000315436|WSB2	ENSG00000176871|ENST00000315436|WSB2	MULTI-MSMS	OvCa99_classI_Rep5	1	486.7798156738281	2	486.779285	971.544017	2.5932	0.0012623	-0.67482	-0.00032849	1.9183	0.00093381	486.7787463595203	100.74	0.82912	100.74	100.49	101.32	0					38	19	3	0	0	0	0.24597	1	11174	11174		116.9	12.157	1	3511100			14657	7631	11901	11917	16168	16168					0.057106617941940385
GQIKKALRA	9	Unmodified	_GQIKKALRA_					0	0	0		ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	MULTI-MSMS	OvCa99_classI_Rep5	1	492.8180236816406	2	492.819276	983.623999	-0.15634	-7.7049E-05	-0.0033262	-1.6392E-06	-0.15967	-7.8688E-05	492.81911456938525	31.003	0.43331	31.003	30.831	31.264	0					20	8	4	0	0	0	0.19758	1	1242	1242		76.774	13.796	1	372630			14658	6596	11902	11918	16169	16169					0.13153148188030173
GQIKQIIRI	9	Unmodified	_GQIKQIIRI_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	OvCa99_classI_Rep5	1	534.848876953125	2	534.848033	1067.68151	2.3975	0.0012823	-0.94821	-0.00050715	1.4493	0.00077513	534.8475201263492	75.027	1.7621	75.027	74.718	76.48	0					89	43	5	0	0	0	0.031958	2	7462	7432;7462		133.81	13.192	1	20611000			14659	8645	11903	11919	16170;16171	16171					0.1503799039360274
GQINQKLGV	9	Unmodified	_GQINQKLGV_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.7711486816406	2	478.779816	955.545079	-0.53665	-0.00025694	0.0046501	2.2264E-06	-0.532	-0.00025471	478.77969702262766	61.595	0.62405	61.595	61.245	61.869	0					22	14	2	0	0	0	0.027279	1	5431	5431		82.305	34.389	1	843810			14660	3453	11904	11920	16172	16172					0.0655287616308442
GQIRAQAV	8	Unmodified	_GQIRAQAV_					0	0	0		ENST00000532517.5_1_11:118498004-118527530:+|nuORF;nc|ENSG00000019144|Q86UU1-2|PHLDB1;ENSG00000019144|ENST00000600882|PHLDB1;nc|ENSG00000019144|Q86UU1-3|PHLDB1;ENST00000526699.5_1_11:118505736-118509975:+|nuORF	ENST00000532517.5_1_11:118498004-118527530:+|nuORF	ENST00000532517.5_1_11:118498004-118527530:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	421.745849609375	2	421.745776	841.477	-0.50508	-0.00021302	0.53328	0.00022491	0.028196	1.1892E-05	421.7459109784601	41.969	0.73015	41.969	41.766	42.496	0					39	16	4	0	0	0	0.39692	1	2666	2666		88.643	20.158	1	576610			14661	1016	11905	11921	16173	16173					0.04992051303088374
GQIRFMKK	8	Unmodified	_GQIRFMKK_					0	0	0		nc|ENSG00000122507|Q3SYG4-6|BBS9;nc|ENSG00000122507|Q3SYG4-2|BBS9;nc|ENSG00000122507|Q3SYG4-4|BBS9;nc|ENSG00000122507|Q3SYG4-7|BBS9;nc|ENSG00000122507|Q3SYG4-3|BBS9;ENSG00000122507|ENST00000242067|BBS9;nc|ENSG00000122507|Q3SYG4-5|BBS9	nc|ENSG00000122507|Q3SYG4-6|BBS9	nc|ENSG00000122507|Q3SYG4-6|BBS9	MULTI-MSMS	OvCa9_classI_Rep2	2	504.2959899902344	2	504.294579	1006.57461	2.4403	0.0012306	1.1239	0.00056676	3.5641	0.0017974	504.29503035872443	26.545	0.48776	23.835	23.66	24.147	-2.7097					19	13	2	0	0	0	0.75915	1	379	379		20.482	0	1	16913			14662	3536	11906	11922	16174	16174					0.07158116907589829
GQISETLKT	9	Unmodified	_GQISETLKT_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1	nc|ENSG00000156515|P19367-4|HK1	nc|ENSG00000156515|P19367-4|HK1	MULTI-MSMS	OvCa99_classI_Rep5	1	488.7693176269531	2	488.769114	975.523675	-0.25262	-0.00012347	0.068112	3.3291E-05	-0.1845	-9.018E-05	488.7690585699314	56.575	0.66429	56.575	56.34	57.004	0					47	15	5	0	0	0	0.011767	1	4699	4699		163.15	66.961	1	4333800			14663	5846	11907	11923	16175	16175					0.034934463437252816
GQISETLKT	9	Unmodified	_GQISETLKT_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1	nc|ENSG00000156515|P19367-4|HK1	nc|ENSG00000156515|P19367-4|HK1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	488.769114	975.523675	-0.04062	-1.9854E-05	1.753	0.00085682	1.7124	0.00083697	488.76922965439854	59.696	0.36272	56.92	56.613	56.976	-2.7766	0.17254	0.0016137	NaN	163.15	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8075.3			14664	5846	11907	11923							0.034934463437252816
GQISEVVVV	9	Unmodified	_GQISEVVVV_					0	0	0		nc|ENSG00000099622|Q14011|CIRBP;nc|ENSG00000099622|Q14011-2|CIRBP;ENSG00000099622|ENST00000587896|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	nc|ENSG00000099622|Q14011|CIRBP	MULTI-MSMS	OvCa99_classI_Rep5	1	465.2695617675781	2	465.26875	928.522947	1.7061	0.00079377	0.64235	0.00029887	2.3484	0.0010926	465.26888521032197	107.12	0.88493	107.12	106.89	107.77	0					55	20	4	0	0	0	0.0080801	2	12090	12060;12090		201.49	49.017	1	5258200			14665	1973	11908	11924	16176;16177	16177					0.05582651694669494
GQKAGPRGVGG	11	Unmodified	_GQKAGPRGVGG_					0	0	0		ENST00000538033.2_1_2:114353404-114353458:+|nuORF	ENST00000538033.2_1_2:114353404-114353458:+|nuORF	ENST00000538033.2_1_2:114353404-114353458:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	492.2727966308594	2	492.27269	982.530826	-0.79248	-0.00039012	0.3379	0.00016634	-0.45458	-0.00022378	492.27281781556945	38.402	2.3795	35.692	35.32	37.7	-2.7097					117	47	5	0	0	0	0.64273	1	1834	1834		40.778	1.972	1	1550300			14666	13416	11909	11925	16178	16178					0.03886223734809846
GQKALGLMV	9	Oxidation (M)	_GQKALGLM(Oxidation (M))V_		GQKALGLM(1)V		GQKALGLM(74)V	0	0	1			REV__tr|A0A7D6VQH2|A0A7D6VQH2_9CLOTAminoacidABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03205PE=4SV=1	REV__tr|A0A7D6VQH2|A0A7D6VQH2_9CLOTAminoacidABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03205PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	466.76483154296875	2	466.76532	931.516088	2.5693	0.0011993	-3.5444	-0.0016544	-0.97512	-0.00045515	466.76349599712427	75.977	0.47785	75.977	75.68	76.158	0					30	11	3	0	0	0	0.21395	1	7585	7585		73.975	11.867	1	2036200	+		14667	31325	11910	11926	16179	16179		693			0.04759015542435918
GQKEGEPRI	9	Unmodified	_GQKEGEPRI_					0	0	0		ENSG00000102024|ENST00000355899|PLS3;nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3	ENSG00000102024|ENST00000355899|PLS3	ENSG00000102024|ENST00000355899|PLS3	MULTI-MSMS	OvCa99_classI_Rep5	1	507.2724304199219	2	507.272355	1012.53016	-0.89942	-0.00045625	0.29423	0.00014925	-0.6052	-0.000307	507.27253316959167	34.842	0.84215	34.842	34.632	35.475	0					30	17	2	0	0	0	0.14855	2	1726	1705;1726		85.161	20.643	1	4069400			14668	2216	11911	11927	16180;16181	16181					0.024393842950985345
GQKLLKNI	8	Unmodified	_GQKLLKNI_					0	0	0			REV__tr|A0A7D6VTT9|A0A7D6VTT9_9CLOT4Fe-4SbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03980PE=4SV=1	REV__tr|A0A7D6VTT9|A0A7D6VTT9_9CLOT4Fe-4SbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03980PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	457.75677490234375	2	457.295102	912.575651	-1.8753	-0.00085755	1.4501	0.00066314	-0.42513	-0.00019441	457.2956903865369	49.23	0.98667	46.088	45.884	46.871	-3.1416					25	18	2	0	0	0	0.028476	1	2831	2831		24.203	0	1	42697	+		14669	31630	11912	11928	16182	16182					0.11586654548113984
GQKNFLMLF	9	Unmodified	_GQKNFLMLF_					0	0	0			REV__tr|A0A7D7A265|A0A7D7A265_9CLOTSite-2proteasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18420PE=3SV=1	REV__tr|A0A7D7A265|A0A7D7A265_9CLOTSite-2proteasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18420PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.3306884765625	2	549.294245	1096.57394	-0.74049	-0.00040674	1.7194	0.00094444	0.97889	0.0005377	549.2945961345154	46.497	0.624	43.424	43.083	43.707	-3.0724					16	11	2	0	0	0	0.027462	1	2461	2461		31.955	7.7521	1	17052	+		14670	32524	11913	11929	16183	16183					0.029512774678551068
GQKRRISHL	9	Unmodified	_GQKRRISHL_					0	0	0		REXO1|p.K812Qfs*41|1|0.1|ENSG00000079313|chr19:1820357-1820358|-/C|frameshift_variant;ENSG00000079313|ENST00000170168|REXO1	REXO1|p.K812Qfs*41|1|0.1|ENSG00000079313|chr19:1820357-1820358|-/C|frameshift_variant	REXO1|p.K812Qfs*41|1|0.1|ENSG00000079313|chr19:1820357-1820358|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.8259887695312	2	547.830706	1093.64686	-4.8131	-0.0026367	-3.0811	-0.0016879	-7.8942	-0.0043247	547.8288597088392	154.99	1.902	153.5	152.83	154.73	-1.4911					109	49	3	0	0	0	0.68424	1	15401	15401		21.96	0	1	64964			14671	1612	11914	11930	16184	16184					0.10378167305520947
GQKSFESKI	9	Unmodified	_GQKSFESKI_					0	0	0		INTS4-CYP2R1|1|fusion;ENSG00000186104|ENST00000334636|CYP2R1;ENST00000532805.1_1_11:14900724-14907523:-|nuORF;CYP2R1|p.F425Tfs*27|1|0.05|ENSG00000186104|chr11:14879174-14879175|-/GTTTTAATTTCTTCTGTAGTCCT|frameshift_variant	INTS4-CYP2R1|1|fusion	INTS4-CYP2R1|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	512.2772827148438	2	512.277106	1022.53966	-0.67816	-0.00034741	0.57727	0.00029572	-0.10089	-5.1684E-05	512.2770563042446	41.747	0.64791	41.747	41.42	42.068	0					33	14	4	0	0	0	0.1574	1	2628	2628		83.647	16.153	1	628940			14672	14507	11915	11931	16185	16185					0.029291525806115715
GQKSGFLRI	9	Unmodified	_GQKSGFLRI_					0	0	0		ENST00000474013.1_1_7:99971734-99973868:+|nuORF;nc|ENSG00000085514|Q9UKJ1-4|PILRA;ENST00000484934.1_1_7:99971228-99972163:+|nuORF;nc|ENSG00000085514|Q9UKJ1-3|PILRA;nc|ENSG00000085514|Q9UKJ1-2|PILRA;ENSG00000085514|ENST00000198536|PILRA	ENST00000474013.1_1_7:99971734-99973868:+|nuORF	ENST00000474013.1_1_7:99971734-99973868:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	503.2971496582031	2	503.295633	1004.57671	-0.11145	-5.6094E-05	-0.21598	-0.0001087	-0.32743	-0.00016479	503.2953990920151	65.142	1.1102	65.142	64.834	65.945	0					69	27	4	0	0	0	0.1149	2	5983	5952;5983		93.143	16.261	1	6948900			14673	12423	11916	11932	16186;16187	16187					0.0746086891701907
GQKSGFLRI	9	Unmodified	_GQKSGFLRI_					0	0	0		ENST00000474013.1_1_7:99971734-99973868:+|nuORF;nc|ENSG00000085514|Q9UKJ1-4|PILRA;ENST00000484934.1_1_7:99971228-99972163:+|nuORF;nc|ENSG00000085514|Q9UKJ1-3|PILRA;nc|ENSG00000085514|Q9UKJ1-2|PILRA;ENSG00000085514|ENST00000198536|PILRA	ENST00000474013.1_1_7:99971734-99973868:+|nuORF	ENST00000474013.1_1_7:99971734-99973868:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	503.295633	1004.57671	0.23387	0.0001177	3.379	0.0017006	3.6129	0.0018183	503.7995996474633	68.251	1.4194	64.761	64.186	65.605	-3.4902	-0.19081	0.0034285	NaN	93.143	47	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56097			14674	12423	11916	11932							0.0746086891701907
GQKTEFKV	8	Unmodified	_GQKTEFKV_					0	0	0		chr19:579656-581444|428|26.64|0.0|21.35|+|ENST00000618112|BSG,None;nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG	chr19:579656-581444|428|26.64|0.0|21.35|+|ENST00000618112|BSG,None	chr19:579656-581444|428|26.64|0.0|21.35|+|ENST00000618112|BSG,None	MULTI-MSMS	OvCa99_classI_Rep5	1	468.76165771484375	2	468.761092	935.507631	-0.66053	-0.00030963	4.1036	0.0019236	3.4431	0.001614	468.7612585510619	42.089	0.68304	42.089	41.982	42.665	0					24	15	2	0	0	0	0.68704	1	2689	2689		45.972	1.8554	1	1114100			14675	425	11917	11933	16188	16188					0.037297848974731096
GQKTKGNKNIK	11	Unmodified	_GQKTKGNKNIK_					0	0	0			REV__tr|A0A7D7A1W5|A0A7D7A1W5_9CLOTIS1595familytransposaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14105PE=4SV=1	REV__tr|A0A7D7A1W5|A0A7D7A1W5_9CLOTIS1595familytransposaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14105PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	405.91204833984375	3	405.910449	1214.70952	2.1896	0.00088878	1.0291	0.00041774	3.2187	0.0013065	405.91079461880264	64.995	0.70951	62.001	61.746	62.456	-2.9933					33	13	3	0	0	0	0.69808	1	2594	2594		21.032	0	1	77611	+		14676	32511	11918	11934	16189	16189					0.1107526858302208
GQKTQKELNE	10	Unmodified	_GQKTQKELNE_					0	0	0		tr|A0A7D6VPL2|A0A7D6VPL2_9CLOTSmall,acid-solublesporeprotein,alpha/betatypeOS=ClostridiumintestinaleOX=36845GN=HZF06_18990PE=4SV=1	tr|A0A7D6VPL2|A0A7D6VPL2_9CLOTSmall,acid-solublesporeprotein,alpha/betatypeOS=ClostridiumintestinaleOX=36845GN=HZF06_18990PE=4SV=1	tr|A0A7D6VPL2|A0A7D6VPL2_9CLOTSmall,acid-solublesporeprotein,alpha/betatypeOS=ClostridiumintestinaleOX=36845GN=HZF06_18990PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	588.3123168945312	2	587.806759	1173.59897	1.2397	0.00072872	2.073	0.0012185	3.3127	0.0019473	587.8057916391464	149.7	0.49097	149.7	149.4	149.89	0					21	9	3	0	0	0	0.59317	1	17518	17518		42.864	4.1107	1	35351			14677	34779	11919	11935	16190	16190					0.019110038041617372
GQLFSSHQL	9	Unmodified	_GQLFSSHQL_					0	0	0		ENST00000479663.2_1_1:160784551-160784725:+|nuORF	ENST00000479663.2_1_1:160784551-160784725:+|nuORF	ENST00000479663.2_1_1:160784551-160784725:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	508.76171875	2	508.761623	1015.50869	0.10117	5.1469E-05	-0.5167	-0.00026288	-0.41553	-0.00021141	508.7612550652384	32.357	0.88467	32.357	32.105	32.989	0					42	17	4	0	0	0	0.33652	1	1398	1398		58.782	9.3404	1	410850			14678	12507	11920	11936	16191	16191					0.0015599926639424666
GQLKSVTI	8	Unmodified	_GQLKSVTI_					0	0	0		ENST00000472019.5_1_2:220147533-220150716:+|nuORF;ENST00000473750.5_1_2:220147533-220149706:+|nuORF;nc|ENSG00000135924|P25686-2|DNAJB2;ENSG00000135924|ENST00000336576|DNAJB2	ENST00000472019.5_1_2:220147533-220150716:+|nuORF	ENST00000472019.5_1_2:220147533-220150716:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	423.2593688964844	2	423.258185	844.501818	0.31711	0.00013422	-0.1694	-7.17E-05	0.14771	6.2518E-05	423.25794703549445	64.962	0.95549	64.962	64.71	65.665	0					47	23	3	0	0	0	0.27528	1	5928	5928		111.65	5.2331	1	2767600			14679	4432	11921	11937	16192	16192					0.07334686385820532
GQLLSKSLIAH	11	Unmodified	_GQLLSKSLIAH_					0	0	0			REV__ENST00000210313.7_1_9:123579782-123579914:-|nuORF	REV__ENST00000210313.7_1_9:123579782-123579914:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	583.8485717773438	2	583.84823	1165.68191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.871	1	91.363	90.863	91.863	-2.5072								0	0	0	0.19458	1	8202	8202		30.318	1.1477	1		+		14680	23705	11922	11938	16193	16193					0.1056936532279451
GQLNGFHEAF	10	Unmodified	_GQLNGFHEAF_					0	0	0		ENST00000465151.5_1_2:85766338-85768324:+|nuORF;ENST00000469221.5_1_2:85766338-85768508:+|nuORF;ENSG00000168906|ENST00000306434|MAT2A	ENST00000465151.5_1_2:85766338-85768324:+|nuORF	ENST00000465151.5_1_2:85766338-85768324:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	560.2672729492188	2	560.26453	1118.51451	3.1048	0.0017395	-0.16617	-9.3102E-05	2.9386	0.0016464	560.2638814010113	86.707	0.49936	86.707	86.431	86.931	0					23	11	3	0	0	0	0.3094	1	9157	9157		79.713	2.9384	1	949070			14681	6953	11923	11939	16194	16194					-0.04000902221969227
GQLNQAMKI	9	Unmodified	_GQLNQAMKI_					0	0	0		nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72	nc|ENSG00000174780|O76094-2|SRP72	nc|ENSG00000174780|O76094-2|SRP72	MULTI-MSMS	OvCa99_classI_Rep5	1	501.7754821777344	2	501.773677	1001.5328	0.40783	0.00020464	-0.30974	-0.00015542	0.098081	4.9215E-05	501.773420126277	72.452	0.90814	72.452	72.086	72.994	0					31	18	2	0	0	0	0.42676	1	7061	7061		49.442	5.3247	1	2096100			14682	7490	11924	11940	16195	16195					0.0320951642838736
GQLPITIQV	9	Unmodified	_GQLPITIQV_					0	0	0		nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1;PLXND1|p.E1457*|1|0.09|ENSG00000004399|chr3:129565492-129565493|-/A|frameshift_variant;ENST00000514990.1_1_3:129288623-129290035:-|nuORF	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MSMS	OvCa99_classI_Rep5	1	484.79302978515625	2	484.792392	967.570232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.64	1	130.64	130.14	131.14	0								0	0	0	0.031623	1	15162	15162		88.177	7.7223	1				14683	825	11925	11941	16196	16196					0.08514930965657186
GQLPVLAITD	10	Unmodified	_GQLPVLAITD_					0	0	0		ENSG00000106258|ENST00000222982|CYP3A5;nc|ENSG00000106258|P20815-2|CYP3A5	ENSG00000106258|ENST00000222982|CYP3A5	ENSG00000106258|ENST00000222982|CYP3A5	MULTI-MSMS	OvCa9_classI_Rep3	3	513.7946166992188	2	513.795132	1025.57571	1.119	0.00057493	-1.297	-0.00066642	-0.17805	-9.1483E-05	513.7943991863143	128.58	1.0865	127.49	127.22	128.31	-1.0933					43	21	3	0	0	0	0.64063	1	10134	10134		37.159	6.8414	1	164730			14684	2537	11926	11942	16197	16197					0.06394609757467151
GQLQSARGV	9	Unmodified	_GQLQSARGV_					0	0	0		ENST00000470776.1_1_3:8543537-8579195:+|nuORF;ENSG00000071282|ENST00000157600|LMCD1	ENST00000470776.1_1_3:8543537-8579195:+|nuORF	ENST00000470776.1_1_3:8543537-8579195:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	458.25390625	2	458.253966	914.493378	-0.50713	-0.00023239	2.399	0.0010993	1.8919	0.00086695	458.2541358753629	41.592	0.64883	41.592	41.375	42.024	0					40	14	4	0	0	0	0.3076	1	2618	2618		62.107	1.9892	1	735270			14685	1449	11927	11943	16198	16198					0.032711324691945265
GQLVQSKL	8	Unmodified	_GQLVQSKL_					0	0	0			REV__NAV2|p.D962Ifs*69|1|0.03|ENSG00000166833|chr11:20036003-20036004|-/CATTCTTTTTCATCTTTTTA|frameshift_variant;REV__ENSG00000166833|ENST00000349880|NAV2	REV__ENSG00000166833|ENST00000349880|NAV2	MULTI-MSMS	OvCa99_classI_Rep5	1	436.764892578125	2	436.763635	871.512717	0.36594	0.00015983	-0.14638	-6.3933E-05	0.21956	9.5895E-05	436.763429856414	54.611	0.93499	54.611	54.172	55.107	0					40	21	3	0	0	0	0.28381	1	4435	4435		110.12	0	1	2547700	+		14686	21225;28697	11928	11944	16199	16199					0.071820887600893
GQMLEDINV	9	Unmodified	_GQMLEDINV_					0	0	0			REV__tr|A0A7D6VPR7|A0A7D6VPR7_9CLOTGlucose-6-phosphateisomeraseOS=ClostridiumintestinaleOX=36845GN=pgiPE=3SV=1	REV__tr|A0A7D6VPR7|A0A7D6VPR7_9CLOTGlucose-6-phosphateisomeraseOS=ClostridiumintestinaleOX=36845GN=pgiPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	509.749755859375	2	509.747324	1017.4801	-0.29799	-0.0001519	3.0639	0.0015618	2.7659	0.0014099	509.74940990775684	43.249	1.4253	43.249	42.97	44.396	0					88	32	5	0	0	0	0.11471	3	2827	2827;2854;2886		93.195	18.94	1	35640000	+		14687	31268	11929	11945	16200;16201;16202	16200					-0.027944864250798673
GQMNLTKV	8	Unmodified	_GQMNLTKV_					0	0	0		ENST00000483659.5_1_2:85622736-85628768:-|nuORF;nc|ENSG00000042493|P40121-2|CAPG;ENSG00000042493|ENST00000263867|CAPG	ENST00000483659.5_1_2:85622736-85628768:-|nuORF	ENST00000483659.5_1_2:85622736-85628768:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	445.7437438964844	2	445.741845	889.469137	0.75335	0.0003358	-1.2757	-0.00056865	-0.5224	-0.00023285	445.7411840987478	60.953	0.98167	60.953	60.392	61.374	0					37	22	3	0	0	0	0.59904	1	5354	5354		64.207	10.856	1	837440			14688	1124	11930	11946	16203	16203					0.019981559912935154
GQMPSDKTI	9	Unmodified	_GQMPSDKTI_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;TUBA1B|p.G111Afs*71|1|0.21|ENSG00000123416|chr12:49129285-49129285|C/-|frameshift_variant;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000550254.1_1_12:49580073-49582762:-|nuORF;ENST00000475683.1_1_2:220116706-220118580:-|nuORF;ENST00000551324.5_1_12:49523262-49525083:-|nuORF;TUBA1C|p.G44R|1|0.14|ENSG00000167553|chr12:49269591-49269591|G/A|missense_variant;TUBA1A|p.D46Mfs*23|1|0.08|ENSG00000167552|chr12:49186702-49186702|T/-|frameshift_variant;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;TUBA1A|p.R264Pfs*25|1|0.06|ENSG00000167552|chr12:49185575-49185575|C/-|frameshift_variant;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000167552|ENST00000301071|TUBA1A	MULTI-MSMS	OvCa99_classI_Rep5	1	488.74334716796875	2	488.742042	975.469531	-0.71215	-0.00034806	0.69374	0.00033906	-0.018412	-8.9985E-06	488.74207007365203	53.283	0.65151	53.283	52.999	53.651	0					28	14	3	0	0	0	0.2077	1	4219	4219		75.043	1.0686	1	1909000			14689	3593;6805;6806	11931	11947	16204	16204					-0.019184690794986636
GQNDIHHKV	9	Unmodified	_GQNDIHHKV_					0	0	0		nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	MULTI-MSMS	OvCa99_classI_Rep5	1	524.2702026367188	2	524.270147	1046.52574	-1.0132	-0.0005312	0.45319	0.0002376	-0.56002	-0.0002936	524.2704346646909	25.618	1.0001	25.618	25.392	26.392	0					52	19	5	0	0	0	0.070405	2	586	586;612		107.01	46.036	1	2963900			14690	4721	11932	11948	16205;16206	16205					0.004339198721709181
GQNKQHSI	8	Unmodified	_GQNKQHSI_					0	0	0		ENSG00000107223|ENST00000224073|EDF1;nc|ENSG00000107223|O60869-2|EDF1;nc|ENSG00000107223|O60869-3|EDF1	ENSG00000107223|ENST00000224073|EDF1	ENSG00000107223|ENST00000224073|EDF1	MULTI-MSMS	OvCa99_classI_Rep5	1	456.2386779785156	2	456.238316	910.462078	-0.11409	-5.2053E-05	0.22376	0.00010209	0.10967	5.0035E-05	456.2382667129436	23.372	0.55364	23.372	23.195	23.748	0					23	10	4	0	0	0	0.42208	1	318	318		85.359	19.556	1	403160			14691	2597	11933	11949	16207	16207					0.003265594350864376
GQNPTNAEV	9	Unmodified	_GQNPTNAEV_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000548725.5_1_12:56552185-56553955:+|nuORF;ENST00000547703.5_1_12:56552185-56553570:+|nuORF;ENST00000546630.1_1_12:56552185-56553570:+|nuORF;ENST00000549178.5_1_12:56548807-56551507:+|nuORF;ENST00000550152.5_1_12:56547702-56549709:+|nuORF;ENSG00000198336|ENST00000393450|MYL4;ENSG00000196465|ENST00000695999|MYL6B;ENST00000405661.8_1_12:56547702-56549525:+|nuORF;CPD-MYL4|2|fusion;CPD-MYL4|1|fusion;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6;nc|ENSG00000092841|P60660-2|MYL6	ENSG00000092841|ENST00000550697|MYL6	MULTI-MSMS	OvCa99_classI_Rep5	1	465.2209777832031	2	465.219788	928.425024	-0.75991	-0.00035352	0.88172	0.00041019	0.12182	5.6671E-05	465.2200755994006	50.095	0.47679	50.095	49.899	50.376	0					30	10	4	0	0	0	0.017173	2	3780	3780;3806		150.36	65.446	1	2443700			14692	1901;14919	11934	11950	16208;16209	16208					-0.0420515690133243
GQNRIHLEI	9	Unmodified	_GQNRIHLEI_					0	0	0		ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	MULTI-MSMS	OvCa99_classI_Rep5	1	540.3032836914062	2	540.301447	1078.58834	-0.4403	-0.0002379	0.60177	0.00032514	0.16147	8.7241E-05	540.3015848133481	69.567	0.57646	69.567	69.307	69.883	0					46	13	5	0	0	0	0.44568	1	6641	6641		47.657	0	1	6574600			14693	1515	11935	11951	16210	16210					0.052190659403549944
GQNSFSLEL	9	Unmodified	_GQNSFSLEL_					0	0	0		nc|ENSG00000138347|Q86TC9-2|MYPN;ENSG00000138347|ENST00000358913|MYPN;nc|ENSG00000129116|Q8WX93-7|PALLD;ENST00000507699.1_1_4:169819634-169847533:+|nuORF;nc|ENSG00000129116|Q8WX93-4|PALLD;nc|ENSG00000129116|Q8WX93-8|PALLD;nc|ENSG00000129116|Q8WX93-3|PALLD;nc|ENSG00000129116|Q8WX93-2|PALLD;ENSG00000129116|ENST00000505667|PALLD;nc|ENSG00000129116|Q8WX93-5|PALLD;nc|ENSG00000129116|Q8WX93|PALLD	nc|ENSG00000138347|Q86TC9-2|MYPN	nc|ENSG00000138347|Q86TC9-2|MYPN	MULTI-MSMS	OvCa99_classI_Rep5	1	497.7467041015625	2	497.745639	993.476725	1.6415	0.00081705	0.30866	0.00015363	1.9502	0.00097068	497.7456067490501	122.64	0.73636	122.64	122.4	123.14	0					31	15	3	0	0	0	0.10363	1	14137	14137		96.19	10.831	1	706690			14694	4676	11936	11952	16211	16211					-0.020274132074405316
GQPCCHQHD	9	Unmodified	_GQPCCHQHD_					0	0	0			REV__nc|ENSG00000030582|P28799-3|GRN	REV__nc|ENSG00000030582|P28799-3|GRN	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.3334350585938	2	512.689818	1023.36508	0.33753	0.00017305	2.1697	0.0011124	2.5072	0.0012854	512.690843822844	72.69	0.23022	72.69	72.533	72.764	0					7	5	2	0	0	0	0.027462	1	7088	7088		37.159	3.6435	1	107670	+		14695	16586	11937	11953	16212	16212					-0.14566494107862127
GQPELRVAL	9	Unmodified	_GQPELRVAL_					0	0	0			REV__nc|ENSG00000105137|Q6ZW31-2|SYDE1	REV__nc|ENSG00000105137|Q6ZW31-2|SYDE1	MULTI-MSMS	OvCa9_classI_Rep3	3	491.78778076171875	2	491.787641	981.56073	-0.45797	-0.00022522	-0.31578	-0.0001553	-0.77375	-0.00038052	491.78761153947676	73.69	1.436	71.203	70.432	71.868	-2.4873					89	28	5	0	0	0	0.38969	1	3606	3606		52.937	0.63753	1	713280	+		14696	17701	11938	11954	16213	16213					0.06921162680123416
GQPGSVLRV	9	Unmodified	_GQPGSVLRV_					0	0	0		ENST00000525522.5_1_11:494693-499199:-|nuORF;ENST00000525701.5_1_11:494693-500690:-|nuORF;ENSG00000023191|ENST00000354420|RNH1	ENST00000525522.5_1_11:494693-499199:-|nuORF	ENST00000525522.5_1_11:494693-499199:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	456.76806640625	2	456.766709	911.518865	-0.43645	-0.00019936	-0.14197	-6.4847E-05	-0.57842	-0.0002642	456.76664797266125	67.979	1.8131	67.979	67.371	69.184	0					128	44	5	0	0	0	0.094791	2	6365	6365;6394		98.582	16.051	1	44651000			14697	1036	11939	11955	16214;16215	16214					0.05956606991605895
GQPKAAPSV	9	Unmodified	_GQPKAAPSV_					0	0	0		chr22:22900187-22900976|86|973.84|0.0|26.54|+|2|None,IGLC2|2;nc|ENSG00000222037|P0CF74|IGLC6;nc|ENSG00000211685|A0M8Q6|IGLC7;nc|ENSG00000211679|P0DOY3|IGLC3;nc|ENSG00000211677|P0DOY2|IGLC2	chr22:22900187-22900976|86|973.84|0.0|26.54|+|2|None,IGLC2|2	chr22:22900187-22900976|86|973.84|0.0|26.54|+|2|None,IGLC2|2	MULTI-MSMS	OvCa99_classI_Rep5	1	427.7402038574219	2	427.74016	853.465767	-0.32202	-0.00013774	0.30272	0.00012949	-0.019295	-8.2531E-06	427.74022350827653	40.273	1.7101	40.273	39.883	41.594	0					74	37	3	0	0	0	0.031958	3	2440	2417;2440;2465		133.81	54.362	1	4218400			14698	464	11940	11956	16216;16217;16218	16217					0.03317229208937533
GQPKAAPSV	9	Unmodified	_GQPKAAPSV_					0	0	0		chr22:22900187-22900976|86|973.84|0.0|26.54|+|2|None,IGLC2|2;nc|ENSG00000222037|P0CF74|IGLC6;nc|ENSG00000211685|A0M8Q6|IGLC7;nc|ENSG00000211679|P0DOY3|IGLC3;nc|ENSG00000211677|P0DOY2|IGLC2	chr22:22900187-22900976|86|973.84|0.0|26.54|+|2|None,IGLC2|2	chr22:22900187-22900976|86|973.84|0.0|26.54|+|2|None,IGLC2|2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	427.74016	853.465767	-0.59383	-0.00025401	0.46435	0.00019862	-0.12948	-5.5386E-05	427.74031982263165	42.911	1.1528	39.904	39.591	40.744	-3.0074	-0.18451	0.00011887	NaN	133.81	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39183			14699	464	11940	11956							0.03317229208937533
GQPLAIYYL	9	Unmodified	_GQPLAIYYL_					0	0	0		nc|ENSG00000101251|Q5TEA6-2|SEL1L2;ENSG00000101251|ENST00000284951|SEL1L2	nc|ENSG00000101251|Q5TEA6-2|SEL1L2	nc|ENSG00000101251|Q5TEA6-2|SEL1L2	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.3318481445312	2	519.286943	1036.55933	-0.59121	-0.00030701	-3.0662	-0.0015923	-3.6575	-0.0018993	519.2853707568778	77.269	1.3262	74.897	74.505	75.832	-2.3715					41	25	3	0	0	0	0.027441	1	4041	4041		37.159	0	1	365840			14700	14929	11941	11957	16219	16219					0.042515285913850676
GQPSIINHI	9	Unmodified	_GQPSIINHI_					0	0	0		ENSG00000183826|ENST00000481247|BTBD9;nc|ENSG00000183826|Q96Q07-3|BTBD9;nc|ENSG00000183826|Q96Q07-2|BTBD9	ENSG00000183826|ENST00000481247|BTBD9	ENSG00000183826|ENST00000481247|BTBD9	MULTI-MSMS	OvCa99_classI_Rep5	1	489.7738037109375	2	489.771991	977.529429	1.3434	0.00065796	1.0231	0.00050109	2.3665	0.001159	489.77231576954824	78.919	0.68589	78.919	78.625	79.311	0					51	16	4	0	0	0	0.26076	2	8033	8006;8033		67.494	11.989	1	5242300			14701	8112	11942	11958	16220;16221	16221					0.03976589646026696
GQQIGYLPL	9	Unmodified	_GQQIGYLPL_					0	0	0		nc|ENSG00000087303|Q14112-2|NID2;ENSG00000087303|ENST00000216286|NID2	nc|ENSG00000087303|Q14112-2|NID2	nc|ENSG00000087303|Q14112-2|NID2	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.2615051269531	2	494.776742	987.538931	-0.91326	-0.00045186	-3.9192	-0.0019391	-4.8325	-0.002391	494.7750350080121	43.516	0.38386	43.516	43.353	43.737	0					17	8	3	0	0	0	0.027462	1	2875	2875		40.573	16.37	1	112330			14702	1772	11943	11959	16222	16222					0.0446635793156247
GQQKAPLAR	9	Unmodified	_GQQKAPLAR_					0	0	0			REV__ENST00000473699.5_1_1:155987979-155988078:-|nuORF	REV__ENST00000473699.5_1_1:155987979-155988078:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.78216552734375	2	484.785433	967.556313	-0.93538	-0.00045346	0.0080458	3.9005E-06	-0.92734	-0.00044956	484.7852346307241	41.483	1.5437	38.503	38.127	39.67	-2.9804					50	29	2	0	0	0	0.027462	1	1858	1858		10.866	0	1	113380	+		14703	26333	11944	11960	16223	16223					0.07123698257214528
GQQKLYQV	8	Unmodified	_GQQKLYQV_					0	0	0		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9;nc|ENSG00000111859|Q14511-2|NEDD9;ENST00000448183.6_1_6:11200558-11306280:-|nuORF	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-MSMS	OvCa99_classI_Rep5	1	482.2676086425781	2	482.266542	962.51853	-0.036294	-1.7504E-05	-0.35264	-0.00017007	-0.38894	-0.00018757	482.26630455359134	56.645	1.4323	56.645	56.3	57.732	0					93	33	5	0	0	0	0.056596	3	4747	4694;4720;4747		157.99	51.574	1	11686000			14704	2858	11945	11961	16224;16225;16226	16226					0.03577187271753246
GQQKPQEQI	9	Unmodified	_GQQKPQEQI_					0	0	0		ENSG00000118960|ENST00000304031|HS1BP3	ENSG00000118960|ENST00000304031|HS1BP3	ENSG00000118960|ENST00000304031|HS1BP3	MULTI-MSMS	OvCa99_classI_Rep5	1	528.2780151367188	2	528.277638	1054.54072	-0.56573	-0.00029886	-0.57248	-0.00030243	-1.1382	-0.00060129	528.2775508465169	38.772	0.89392	38.772	38.348	39.242	0					36	19	3	0	0	0	0.13504	1	2231	2231		87.696	26.005	1	706620			14705	3332	11946	11962	16227	16227					0.015633669495173308
GQQKPQEQI	9	Unmodified	_GQQKPQEQI_					0	0	0		ENSG00000118960|ENST00000304031|HS1BP3	ENSG00000118960|ENST00000304031|HS1BP3	ENSG00000118960|ENST00000304031|HS1BP3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	528.277638	1054.54072	0.23042	0.00012172	-6.491	-0.0034291	-6.2606	-0.0033073	528.7747021387797	41.459	0.24635	38.749	38.536	38.783	-2.7097	-0.011368	-0.0050314	NaN	87.696	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9526.8			14706	3332	11946	11962							0.015633669495173308
GQQTWLPPE	9	Unmodified	_GQQTWLPPE_					0	0	0			REV__nc|ENSG00000141258|O43147-5|SGSM2	REV__nc|ENSG00000141258|O43147-5|SGSM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3544921875	2	528.261456	1054.50836	0.70751	0.00037375	0.37607	0.00019866	1.0836	0.00057241	528.2615527112744	153.1	0.43472	153.1	152.71	153.15	0					10	8	2	0	0	0	0.027462	1	17913	17913		21.96	0	1	21254	+		14707	19722	11947	11963	16228	16228					-0.016714204534764576
GQRDLDLR	8	Unmodified	_GQRDLDLR_					0	0	0		ENST00000380770.3_1_19:10397831-10398857:+|nuORF;nc|ENSG00000105371|Q14773-3|ICAM4	ENST00000380770.3_1_19:10397831-10398857:+|nuORF	ENST00000380770.3_1_19:10397831-10398857:+|nuORF	MSMS	OvCa99_classI_Rep5	1	486.7645568847656	2	486.764697	971.514842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.277	1	43.277	42.777	43.777	0								0	0	0	0.25949	1	2845	2845		98.629	8.2596	1				14708	11151	11948	11964	16229	16229					0.027945174978981413
GQRGGTSPASQ	11	Unmodified	_GQRGGTSPASQ_					0	0	0			REV__FLG|p.P2790Dfs*19|1|0.02|ENSG00000143631|chr1:152306518-152306519|-/GTGTC|frameshift_variant	REV__FLG|p.P2790Dfs*19|1|0.02|ENSG00000143631|chr1:152306518-152306519|-/GTGTC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	523.2572021484375	2	523.254694	1044.49483	-0.34472	-0.00018038	3.3386	0.0017469	2.9938	0.0015665	523.2564216155795	32.82	1.0301	32.82	32.602	33.632	0					51	20	5	0	0	0	0.70032	1	1484	1484		29.551	2.5034	1	2130100	+	+	14709	16195	11949	11965	16230	16230					-0.025632782327193127
GQRKARTCVSK	11	Unmodified	_GQRKARTCVSK_					0	0	0		nc|ENSG00000124006|O75147-1|OBSL1	nc|ENSG00000124006|O75147-1|OBSL1	nc|ENSG00000124006|O75147-1|OBSL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.6023864746094	3	411.899667	1232.67717	0.26529	0.00010927	1.4646	0.00060325	1.7298	0.00071252	411.9001663712841	28.639	0.34946	28.639	28.439	28.789	0					10	6	2	0	0	0	0.026221	1	949	949		9.6461	0	1	20718			14710	14995	11950	11966	16231	16231					0.07014157908383822
GQRLRQWRSKK	11	Unmodified	_GQRLRQWRSKK_					0	0	0		ENST00000310421.4_1_8:67579238-67579442:-|nuORF	ENST00000310421.4_1_8:67579238-67579442:-|nuORF	ENST00000310421.4_1_8:67579238-67579442:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	481.6191101074219	3	481.619892	1441.83785	1.3927	0.00067077	-2.6596	-0.0012809	-1.2668	-0.00061013	481.6185706788555	28.734	0.83069	26.024	25.806	26.636	-2.7097					43	17	4	0	0	0	0.7252	1	635	635		12.957	3.7457	1	87409			14711	10285	11951	11967	16232	16232					0.13460248616752324
GQSAIKHNV	9	Unmodified	_GQSAIKHNV_					0	0	0		nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	MULTI-MSMS	OvCa99_classI_Rep5	1	477.2618408203125	2	477.261791	952.509028	-0.24136	-0.00011519	-0.049412	-2.3582E-05	-0.29077	-0.00013877	477.26163115214086	29.612	0.74977	29.612	29.436	30.186	0					26	14	4	0	0	0	0.16562	1	1073	1073		82.241	28.889	1	721760			14712	4891	11952	11968	16233	16233					0.030874189862174717
GQSALPQRL	9	Unmodified	_GQSALPQRL_					0	0	0		EP400|p.D2035Afs*2|1|0.12|ENSG00000183495|chr12:132037992-132037993|-/C|frameshift_variant;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400	EP400|p.D2035Afs*2|1|0.12|ENSG00000183495|chr12:132037992-132037993|-/C|frameshift_variant	EP400|p.D2035Afs*2|1|0.12|ENSG00000183495|chr12:132037992-132037993|-/C|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	485.27838134765625	2	485.277441	968.540328	0.093527	4.5387E-05	-0.18282	-8.8717E-05	-0.08929	-4.333E-05	485.27720311395854	64.8	0.60592	64.8	64.544	65.15	0					35	14	3	0	0	0	0.060996	1	5903	5903		112.41	27.25	1	3462400			14713	8079	11953	11969	16234	16234					0.054799920203208785
GQSELASRLTL	11	Unmodified	_GQSELASRLTL_					0	0	0		ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21	ENSG00000090487|ENST00000204566|SPG21	ENSG00000090487|ENST00000204566|SPG21	MULTI-MSMS	OvCa99_classI_Rep5	1	587.8245849609375	2	587.824952	1173.63535	2.2752	0.0013374	-0.35916	-0.00021112	1.9161	0.0011263	587.8248354144374	91.77	0.6732	91.77	91.459	92.132	0					35	15	3	0	0	0	0.36853	1	9905	9905		63.426	10.075	1	2028300			14714	1840	11954	11970	16235	16235					0.055478807008512376
GQSELASRLTL	11	Unmodified	_GQSELASRLTL_					0	0	0		ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21	ENSG00000090487|ENST00000204566|SPG21	ENSG00000090487|ENST00000204566|SPG21	MULTI-MATCH	OvCa9_classI_Rep2	2		2	587.824952	1173.63535	0.017946	1.0549E-05	0.014797	8.6978E-06	0.032742	1.9247E-05	587.8249497642261	92.692	1.237	91.524	91.129	92.366	-1.168	-0.016615	-0.00065995	NaN	63.426	43	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217160			14715	1840	11954	11970							0.055478807008512376
GQSELASRLTL	11	Unmodified	_GQSELASRLTL_					0	0	0		ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21	ENSG00000090487|ENST00000204566|SPG21	ENSG00000090487|ENST00000204566|SPG21	MULTI-MATCH	OvCa9_classI_Rep3	3		2	587.824952	1173.63535	-2.7663	-0.0016261	2.7037	0.0015893	-0.062562	-3.6775E-05	587.8264482704926	93.413	1.1633	91.452	91.128	92.292	-1.9617	-0.088897	0.0025013	NaN	63.426	38	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	321890			14716	1840	11954	11970							0.055478807008512376
GQSELASRLTL	11	Unmodified	_GQSELASRLTL_					0	0	0		ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21	ENSG00000090487|ENST00000204566|SPG21	ENSG00000090487|ENST00000204566|SPG21	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	587.824952	1173.63535	-0.73583	-0.00043254	0.38538	0.00022654	-0.35045	-0.00020601	587.8250782353156	93.923	1.1594	91.416	91.212	92.372	-2.5072	-0.12439	-0.00022427	NaN	63.426	41	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269600			14717	1840	11954	11970							0.055478807008512376
GQSHLHIAV	9	Unmodified	_GQSHLHIAV_					0	0	0		ENSG00000198718|ENST00000361462|TOGARAM1	ENSG00000198718|ENST00000361462|TOGARAM1;REV__nc|ENSG00000203710|P17927|CR1	REV__nc|ENSG00000203710|P17927|CR1	MULTI-MSMS	OvCa99_classI_Rep5	1	481.2655029296875	2	481.264333	960.514114	-0.38702	-0.00018626	1.0982	0.00052854	0.71121	0.00034228	481.264345914993	55.079	0.7223	55.079	54.718	55.44	0					32	16	3	0	0	0	0.13482	1	4481	4481		87.754	36.419	1	1829900			14718	23108;8854	11955	11971	16236	16236					0.03227722848839676
GQSIHQVTV	9	Unmodified	_GQSIHQVTV_					0	0	0		ENSG00000115145|ENST00000263904|STAM2	ENSG00000115145|ENST00000263904|STAM2	ENSG00000115145|ENST00000263904|STAM2	MULTI-MSMS	OvCa99_classI_Rep5	1	484.7620849609375	2	484.761623	967.508694	-0.46201	-0.00022396	0.50307	0.00024387	0.041064	1.9906E-05	484.7617190420462	55.542	0.73724	55.542	55.315	56.052	0					44	17	4	0	0	0	0.1149	1	4546	4546		93.143	21.266	1	6220800			14719	3064	11956	11972	16237	16237					0.02363999266378869
GQSKGFAFI	9	Unmodified	_GQSKGFAFI_					0	0	0		ENST00000590158.1_1_19:10225792-10226817:-|nuORF;ENSG00000130811|ENST00000253108|EIF3G	ENST00000590158.1_1_19:10225792-10226817:-|nuORF	ENST00000590158.1_1_19:10225792-10226817:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	477.7572937011719	2	477.75581	953.497067	1.4865	0.00071018	0.48096	0.00022978	1.9674	0.00093996	477.75589026531463	93.372	0.78976	93.372	93.093	93.883	0					45	18	3	0	0	0	0.053172	2	10138	10111;10138		116.9	17.529	1	5955100			14720	4018	11957	11973	16238;16239	16239					0.01845802243030903
GQSKGFALV	9	Unmodified	_GQSKGFALV_					0	0	0		ENST00000547486.1_1_12:69645004-69651771:+|nuORF;nc|ENSG00000111605|Q16630-3|CPSF6;ENSG00000111605|ENST00000435070|CPSF6;nc|ENSG00000111605|Q16630-2|CPSF6	ENST00000547486.1_1_12:69645004-69651771:+|nuORF	ENST00000547486.1_1_12:69645004-69651771:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	453.7571105957031	2	453.75581	905.497067	2.4199	0.001098	-0.080604	-3.6574E-05	2.3393	0.0010614	453.7556253081432	76.346	0.68185	76.346	76.076	76.757	0					47	16	4	0	0	0	0.11471	2	7636	7636;7670		93.195	10.945	1	5026400			14721	2832	11958	11974	16240;16241	16240					0.040538022430382625
GQSKIFFRA	9	Unmodified	_GQSKIFFRA_					0	0	0		nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MULTI-MSMS	OvCa99_classI_Rep5	1	527.2974243164062	2	527.295633	1052.57671	-0.21596	-0.00011387	-0.46833	-0.00024695	-0.68429	-0.00036083	527.2951387695127	60.947	0.599	60.947	60.646	61.245	0					22	13	2	0	0	0	0.094616	1	5360	5360		98.629	45.693	1	1714500			14722	15021;2445	11959	11975	16242	16242					0.052528689170458165
GQSKVFFRA	9	Unmodified	_GQSKVFFRA_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.A1773Sfs*19|1|0.04|ENSG00000100345|chr22:36285287-36285288|-/T|frameshift_variant;CHD2-MYH9|1|fusion;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OvCa99_classI_Rep5	1	520.289794921875	2	520.287808	1038.56106	-0.84605	-0.00044019	0.41916	0.00021808	-0.4269	-0.00022211	520.2880287515458	54.028	1.6223	54.028	53.651	55.273	0					118	38	4	0	0	0	0.030815	4	4318	4318;4348;4378;4405		134.81	62.933	1	60700000			14723	2050	11960	11976	16243;16244;16245;16246	16243					0.043325824000021385
GQSLIIINV	9	Unmodified	_GQSLIIINV_					0	0	0		ENSG00000172061|ENST00000347624|LRRC15;nc|ENSG00000172061|Q8TF66-2|LRRC15	ENSG00000172061|ENST00000347624|LRRC15	ENSG00000172061|ENST00000347624|LRRC15	MULTI-MSMS	OvCa99_classI_Rep5	1	478.7937316894531	2	478.792392	955.570232	1.9706	0.0009435	0.49753	0.00023821	2.4681	0.0011817	478.79242205018426	136.24	0.51645	136.24	135.97	136.49	0					19	10	3	0	0	0	0.42576	1	15884	15884		49.536	3.5638	1	135310			14724	7265	11961	11977	16247	16247					0.09066930965661868
GQSPHKFTV	9	Unmodified	_GQSPHKFTV_					0	0	0		nc|ENSG00000138744|Q02083-3|NAAA;nc|ENSG00000138744|Q02083-2|NAAA;ENSG00000138744|ENST00000286733|NAAA	nc|ENSG00000138744|Q02083-3|NAAA	nc|ENSG00000138744|Q02083-3|NAAA	MULTI-MSMS	OvCa99_classI_Rep5	1	500.76422119140625	2	500.764166	999.513779	-0.70001	-0.00035054	-0.038541	-1.93E-05	-0.73855	-0.00036984	500.76413916585165	41.659	1.5941	41.659	41.42	43.014	0					98	36	5	0	0	0	0.033166	2	2608	2608;2632		132.76	31.157	1	12789000			14725	4720	11962	11978	16248;16249	16248					0.014003031290030776
GQSPVLRII	9	Unmodified	_GQSPVLRII_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF;nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3	nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	491.80780029296875	2	491.805834	981.597115	2.4115	0.001186	2.4934	0.0012263	4.9048	0.0024122	491.8074495552169	98.959	0.60249	98.959	98.552	99.154	0					29	14	3	0	0	0	0.26076	1	10928	10928		67.494	21.521	1	1433400			14726	962;3351	11963	11979	16250	16250					0.10558039576847023
GQSRLNEKI	9	Unmodified	_GQSRLNEKI_					0	0	0		nc|ENSG00000148908|O43665-2|RGS10;nc|ENSG00000148908|O43665-1|RGS10;ENSG00000148908|ENST00000369103|RGS10	nc|ENSG00000148908|O43665-2|RGS10	nc|ENSG00000148908|O43665-2|RGS10	MULTI-MSMS	OvCa99_classI_Rep5	1	522.7933349609375	2	522.793455	1043.57236	-0.84798	-0.00044332	0.33446	0.00017485	-0.51352	-0.00026846	522.7936809473506	38.905	0.92759	38.905	38.619	39.547	0					45	20	5	0	0	0	0.16264	1	2260	2260		82.75	0.44546	1	3473000			14727	5431	11964	11980	16251	16251					0.05231359703475391
GQSTEELRV	9	Unmodified	_GQSTEELRV_					0	0	0		ENSG00000130203|ENST00000252486|APOE	ENSG00000130203|ENST00000252486|APOE	ENSG00000130203|ENST00000252486|APOE	MULTI-MSMS	OvCa99_classI_Rep5	1	509.76336669921875	2	509.76182	1017.50909	0.17372	8.8553E-05	0.0045311	2.3098E-06	0.17825	9.0863E-05	509.761557054385	58.229	0.91034	58.229	57.941	58.852	0					59	21	5	0	0	0	0.060996	2	4925	4925;4954		112.41	16.596	1	11930000			14728	3967	11965	11981	16252;16253	16252					0.001033741955552614
GQSTVNHSL	9	Unmodified	_GQSTVNHSL_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.C4432Lfs*27|1|0.15|ENSG00000055609|chr7:152148633-152148634|-/AGCCTGTAATCCCAGCTACTCGGGAGGCTGAG|frameshift_variant	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-MSMS	OvCa99_classI_Rep5	1	471.73553466796875	2	471.735606	941.456658	-0.35569	-0.00016779	0.3741	0.00017648	0.018412	8.6857E-06	471.73569401582796	38.509	0.4487	38.509	38.301	38.75	0					16	9	2	0	0	0	0.060996	1	2191	2191		112.41	27.495	1	425930			14729	1222	11966	11982	16254	16254					-0.016411641473951022
GQSVSSNQRPC	11	Unmodified	_GQSVSSNQRPC_					0	0	0		ENSG00000204539|ENST00000376288|CDSN	ENSG00000204539|ENST00000376288|CDSN	ENSG00000204539|ENST00000376288|CDSN	MULTI-MSMS	OvCa99_classI_Rep5	1	581.76953125	2	581.767111	1161.51967	0.98359	0.00057222	1.6956	0.00098647	2.6792	0.0015587	581.7678883651339	146.79	1.028	146.79	146.47	147.5	0					48	20	3	0	0	0	0.68059	1	17161	17161		36.318	1.1656	1	227170			14730	9000	11967	11983	16255	16255					-0.05462966421623605
GQTAQQSTSQ	10	Unmodified	_GQTAQQSTSQ_					0	0	0			REV__nc|ENSG00000112592|P20226-2|TBP	REV__nc|ENSG00000112592|P20226-2|TBP	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.80126953125	2	518.238709	1034.46287	-0.64873	-0.0003362	-2.5334	-0.0013129	-3.1821	-0.0016491	518.2380694571061	86.009	0.40144	83.789	83.636	84.037	-2.2204					12	7	2	0	0	0	0.026714	1	5093	5093		28.081	8.0847	1	8706.1	+		14731	18107	11968	11984	16256	16256					-0.05298690706513298
GQTGTVHRI	9	Unmodified	_GQTGTVHRI_					0	0	0		nc|ENSG00000197530|Q96AX9-9|MIB2;ENST00000511502.5_1_1:1550926-1563560:+|nuORF;nc|ENSG00000197530|Q96AX9-10|MIB2;nc|ENSG00000197530|Q96AX9-8|MIB2;nc|ENSG00000197530|Q96AX9-7|MIB2;nc|ENSG00000197530|Q96AX9-4|MIB2;ENSG00000197530|ENST00000355826|MIB2;nc|ENSG00000197530|Q96AX9-5|MIB2;ENST00000508148.1_1_1:1560498-1561120:+|nuORF;ENST00000467597.1_1_1:1560168-1561120:+|nuORF	nc|ENSG00000197530|Q96AX9-9|MIB2	nc|ENSG00000197530|Q96AX9-9|MIB2	MULTI-MSMS	OvCa99_classI_Rep5	1	484.7669677734375	2	484.76724	967.519927	0.041403	2.0071E-05	-1.0271	-0.00049788	-0.98565	-0.00047781	484.76673290351783	31.584	1.0426	31.584	31.361	32.403	0					45	20	5	0	0	0	0.066102	1	1307	1307		109.48	24.119	1	2494200			14732	8718	11969	11985	16257	16257					0.03486821360513659
GQTGVIRSV	9	Unmodified	_GQTGVIRSV_					0	0	0		nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF	nc|ENSG00000196235|O00267-2|SUPT5H	nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-MSMS	OvCa99_classI_Rep5	1	458.76483154296875	2	458.764166	915.513779	-0.29767	-0.00013656	-0.15464	-7.0943E-05	-0.45231	-0.0002075	458.76409757711434	54.15	1.259	54.15	53.891	55.15	0					79	29	4	0	0	0	0.011767	2	4349	4349;4380		163.15	55.063	1	20541000			14733	8581	11970	11986	16258;16259	16258					0.052643031289903774
GQTIARSRCGL	11	Unmodified	_GQTIARSRCGL_					0	0	0			REV__nc|ENSG00000059122|Q4VC44-4|FLYWCH1	REV__nc|ENSG00000059122|Q4VC44-4|FLYWCH1	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.851806640625	2	581.311489	1160.60842	-0.87273	-0.00050733	-2.2008	-0.0012793	-3.0735	-0.0017867	581.3092778796271	49.217	0.43156	49.217	49.075	49.507	0					17	9	3	0	0	0	0.025759	1	3653	3653		42.864	12.547	1	172040	+		14734	16732	11971	11987	16260	16260					0.03454493608683151
GQTKEVLVI	9	Unmodified	_GQTKEVLVI_					0	0	0		nc|ENSG00000163104|Q9H4L7-3|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	MULTI-MSMS	OvCa99_classI_Rep5	1	493.79888916015625	2	493.797675	985.580796	0.76256	0.00037655	1.2142	0.00059956	1.9767	0.00097611	493.79820595607094	81.032	1.6937	81.032	80.487	82.181	0					79	40	4	0	0	0	0.070405	2	8311	8311;8345		107.01	8.3781	1	8580300			14735	6266	11972	11988	16261;16262	16261					0.08742913620085346
GQTKLLQLL	9	Unmodified	_GQTKLLQLL_					0	0	0		ENSG00000140396|ENST00000452400|NCOA2	ENSG00000140396|ENST00000452400|NCOA2	ENSG00000140396|ENST00000452400|NCOA2	MULTI-MSMS	OvCa99_classI_Rep5	1	507.3222351074219	2	507.321317	1012.62808	1.5628	0.00079285	-0.30852	-0.00015652	1.2543	0.00063633	507.321047727815	111.14	0.66826	111.14	110.85	111.51	0					36	14	3	0	0	0	0.094791	1	12632	12632		98.582	10.405	1	959280			14736	4837	11973	11989	16263	16263					0.12227192891100458
GQTKLLQLL	9	Unmodified	_GQTKLLQLL_					0	0	0		ENSG00000140396|ENST00000452400|NCOA2	ENSG00000140396|ENST00000452400|NCOA2	ENSG00000140396|ENST00000452400|NCOA2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	507.321317	1012.62808	0.075968	3.854E-05	-0.3911	-0.00019841	-0.31513	-0.00015987	507.3211851563367	111.55	0.83711	111.41	111.13	111.96	-0.13961	0.14576	0.00012225	NaN	98.582	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21207			14737	4837	11973	11989							0.12227192891100458
GQTKLLQLL	9	Unmodified	_GQTKLLQLL_					0	0	0		ENSG00000140396|ENST00000452400|NCOA2	ENSG00000140396|ENST00000452400|NCOA2	ENSG00000140396|ENST00000452400|NCOA2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	507.321317	1012.62808	1.4074	0.00071399	-1.9259	-0.00097704	-0.51851	-0.00026305	507.32022267155486	112.35	0.49223	111.27	111.07	111.56	-1.0753	0.007394	-0.001435	NaN	98.582	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28757			14738	4837	11973	11989							0.12227192891100458
GQTKLLQLL	9	Unmodified	_GQTKLLQLL_					0	0	0		ENSG00000140396|ENST00000452400|NCOA2	ENSG00000140396|ENST00000452400|NCOA2	ENSG00000140396|ENST00000452400|NCOA2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	507.321317	1012.62808	-0.025122	-1.2745E-05	-0.2192	-0.00011121	-0.24433	-0.00012395	507.3211238785414	112.75	0.69091	111.24	111	111.69	-1.5111	-0.030454	0.00029667	NaN	98.582	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35351			14739	4837	11973	11989							0.12227192891100458
GQTLGQGPAGL	11	Unmodified	_GQTLGQGPAGL_					0	0	0		nc|ENSG00000141013|O95995-2|GAS8;ENSG00000141013|ENST00000268699|GAS8;ENST00000569558.5_1_16:90103573-90109750:+|nuORF;ENST00000564789.5_1_16:90106452-90109750:+|nuORF;ENST00000568284.1_1_16:90108802-90109750:+|nuORF	nc|ENSG00000141013|O95995-2|GAS8	nc|ENSG00000141013|O95995-2|GAS8	MULTI-MSMS	OvCa99_classI_Rep5	1	499.7611389160156	2	499.766906	997.519259	-0.40616	-0.00020298	-1.4204	-0.00070987	-1.8266	-0.00091285	499.76596214404583	40.642	0.76344	40.642	40.386	41.149	0					45	16	4	0	0	0	0.56391	1	2513	2513		47.96	9.1534	1	1149000			14740	4890	11974	11990	16264	16264					0.020399819208023473
GQTLLHMAI	9	Unmodified	_GQTLLHMAI_					0	0	0		ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;ANKFY1-SPINT2|1|fusion;ANKFY1-SPINT2|2|fusion	ENSG00000185722|ENST00000341657|ANKFY1	ENSG00000185722|ENST00000341657|ANKFY1	MULTI-MSMS	OvCa99_classI_Rep5	1	492.2718811035156	2	492.27077	982.526987	1.5731	0.0007744	0.43341	0.00021336	2.0065	0.00098775	492.2707253418411	102.09	0.68203	102.09	101.82	102.5	0					40	15	3	0	0	0	0.036687	1	11372	11372		129.68	63.253	1	1402600			14741	8276	11975	11991	16265	16265					0.03502417916718059
GQTPFYIRI	9	Unmodified	_GQTPFYIRI_					0	0	0		ENSG00000137547|ENST00000260102|MRPL15	ENSG00000137547|ENST00000260102|MRPL15	ENSG00000137547|ENST00000260102|MRPL15	MULTI-MSMS	OvCa99_classI_Rep5	1	547.8051147460938	2	547.803291	1093.59203	1.1642	0.00063776	0.62666	0.00034329	1.7909	0.00098104	547.8034385216218	111.54	0.95863	111.54	111.2	112.16	0					48	20	4	0	0	0	0.22621	1	12696	12696		71.877	8.3436	1	717100			14742	4595	11976	11992	16266	16266					0.04897735714234841
GQTQVEIKV	9	Unmodified	_GQTQVEIKV_					0	0	0		ENST00000432228.1_1_2:222827655-222828180:+|nuORF;ENST00000507097.5_1_5:137893182-137909502:-|nuORF;ENSG00000113013|ENST00000297185|HSPA9	ENST00000432228.1_1_2:222827655-222828180:+|nuORF	ENST00000432228.1_1_2:222827655-222828180:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	501.2884521484375	2	501.284931	1000.55531	-0.31812	-0.00015947	0.013662	6.8484E-06	-0.30446	-0.00015262	501.28465675536034	70.51	0.39465	70.51	70.328	70.722	0					17	9	2	0	0	0	0.1243	1	6762	6762		90.601	10.888	1	2718200			14743	2944	11977	11993	16267	16267					0.05505439097669296
GQTQVEIKV	9	Unmodified	_GQTQVEIKV_					0	0	0		ENST00000432228.1_1_2:222827655-222828180:+|nuORF;ENST00000507097.5_1_5:137893182-137909502:-|nuORF;ENSG00000113013|ENST00000297185|HSPA9	ENST00000432228.1_1_2:222827655-222828180:+|nuORF	ENST00000432228.1_1_2:222827655-222828180:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	501.284931	1000.55531	-1.2729	-0.00063809	-2.0342	-0.0010197	-3.3071	-0.0016578	501.7848344994272	73.708	1.1465	70.312	69.688	70.834	-3.3961	-0.099056	-0.0008226	NaN	90.601	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	313130			14744	2944	11977	11993							0.05505439097669296
GQTTVQVRV	9	Unmodified	_GQTTVQVRV_					0	0	0		ENSG00000176624|ENST00000406189|MEX3C	ENSG00000176624|ENST00000406189|MEX3C	ENSG00000176624|ENST00000406189|MEX3C	MULTI-MSMS	OvCa99_classI_Rep5	1	494.2837829589844	2	494.282723	986.550893	-0.34931	-0.00017266	0.51448	0.0002543	0.16517	8.164E-05	494.282890492894	61.103	0.88776	61.103	60.816	61.704	0					37	20	3	0	0	0	0.2422	1	5370	5370		69.628	21.97	1	2366800			14745	7619	11978	11994	16268	16268					0.057079746747604077
GQTYHVAV	8	Unmodified	_GQTYHVAV_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;ENST00000493608.1_1_2:238242084-238243404:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	437.7259216308594	2	437.72451	873.434466	0.6947	0.00030409	-0.56026	-0.00024524	0.13445	5.8851E-05	437.72419857155575	58.754	0.63162	58.754	58.488	59.12	0					47	15	5	0	0	0	0.23117	1	5014	5014		119.56	51.072	1	9666100			14746	6293	11979	11995	16269	16269					-0.0073134382514581375
GQTYHVAVV	9	Unmodified	_GQTYHVAVV_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;ENST00000493608.1_1_2:238242084-238243404:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	487.2608947753906	2	487.258717	972.50288	-0.11865	-5.7815E-05	0.44058	0.00021468	0.32193	0.00015686	487.25896902784183	68.997	1.3172	68.997	68.481	69.798	0					72	31	4	0	0	0	0.062324	1	6526	6526		111.65	42.861	1	15621000			14747	6293	11980	11996	16270	16270					0.015529007547115725
GQVDLTPLGLR	11	Unmodified	_GQVDLTPLGLR_					0	0	0			REV__PIK3R6|p.V667Afs*?|1|0.11|ENSG00000276231|chr17:8804149-8804150|-/TCTGGGGAAAATGCAATATCAG|frameshift_variant	REV__PIK3R6|p.V667Afs*?|1|0.11|ENSG00000276231|chr17:8804149-8804150|-/TCTGGGGAAAATGCAATATCAG|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	584.8369140625	2	584.837862	1167.66117	-0.5266	-0.00030797	-1.65	-0.00096499	-2.1766	-0.001273	584.8368104511369	23.573	0.53937	23.573	23.347	23.886	0					28	10	4	0	0	0	0.65063	1	338	338		40.058	6.1365	1	231030	+		14748	29296	11981	11997	16271	16271					0.08404774943119264
GQVDPNPLVAG	11	Unmodified	_GQVDPNPLVAG_					0	0	0		tr|A0A7D6VQY9|A0A7D6VQY9_9CLOTRiboflavinbiosynthesisproteinRibDOS=ClostridiumintestinaleOX=36845GN=ribDPE=3SV=1	tr|A0A7D6VQY9|A0A7D6VQY9_9CLOTRiboflavinbiosynthesisproteinRibDOS=ClostridiumintestinaleOX=36845GN=ribDPE=3SV=1	tr|A0A7D6VQY9|A0A7D6VQY9_9CLOTRiboflavinbiosynthesisproteinRibDOS=ClostridiumintestinaleOX=36845GN=ribDPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.3211669921875	2	533.780013	1065.54547	-1.9213	-0.0010255	-4.3814	-0.0023387	-6.3027	-0.0033643	533.777467342123	54.6	1.0762	51.352	51.081	52.157	-3.2474					39	20	3	0	0	0	0.025466	1	3409	3409		65.465	1.2581	1	149010			14749	34880	11982	11998	16272	16272					0.015322510922487709
GQVEIVTKV	9	Unmodified	_GQVEIVTKV_					0	0	0		PRUNE2|p.I2107Nfs*6|1|0.11|ENSG00000106772|chr9:76705954-76705955|-/T|frameshift_variant;PRUNE2|p.D2106Efs*46|1|0.11|ENSG00000106772|chr9:76705956-76705957|-/CATCATATTCAAAATCACCCCACGAGGCT|frameshift_variant;PRUNE2|p.V2237Cfs*11|1|0.06|ENSG00000106772|chr9:76705569-76705570|-/T|frameshift_variant;PRUNE2|p.E2525Gfs*3|1|0.07|ENSG00000106772|chr9:76704039-76704039|T/-|frameshift_variant;nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2	PRUNE2|p.I2107Nfs*6|1|0.11|ENSG00000106772|chr9:76705954-76705955|-/T|frameshift_variant	PRUNE2|p.I2107Nfs*6|1|0.11|ENSG00000106772|chr9:76705954-76705955|-/T|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	486.79290771484375	2	486.78985	971.565146	0.0002884	1.4039E-07	0.70134	0.00034141	0.70163	0.00034155	486.7900399744244	73.63	0.85907	73.63	73.317	74.176	0					48	21	4	0	0	0	0.037924	1	7237	7237		128.6	13.708	1	2214900			14750	2573	11983	11999	16273	16273					0.07822627103041668
GQVERAVVI	9	Unmodified	_GQVERAVVI_					0	0	0		ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-MSMS	OvCa99_classI_Rep5	1	485.79217529296875	2	485.787641	969.56073	-1.0564	-0.00051321	0.91019	0.00044216	-0.14626	-7.1051E-05	485.7879805007298	69.866	1.1699	69.866	69.433	70.603	0					65	28	4	0	0	0	0.35694	1	6658	6658		56.434	5.0983	1	13485000			14751	5334	11984	12000	16274	16274					0.07473162680128098
GQVGGQVSV	9	Unmodified	_GQVGGQVSV_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;ENST00000468880.1_1_17:39680334-39681232:-|nuORF;ENST00000471565.2_1_17:39680334-39680852:-|nuORF;chr17:41524405-41524493|111|56.15|0.09|9.34|-|0|None,KRT19|1;chr17:41524247-41524493|158|264.8|0.34|9.6|-|0|None,KRT19|1	CON__P08727	CON__P08727	MULTI-MSMS	OvCa99_classI_Rep5	1	415.723388671875	2	415.721967	829.429381	0.63081	0.00026224	-0.37098	-0.00015423	0.25982	0.00010801	415.7216770670662	65.157	0.91501	65.157	64.916	65.831	0					54	22	4	0	0	0	0.012051	2	5956	5956;5989		162.25	4.9929	1	6425200		+	14752	625	11985	12001	16275;16276	16275					0.007843523122346596
GQVGGQVSV	9	Unmodified	_GQVGGQVSV_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;ENST00000468880.1_1_17:39680334-39681232:-|nuORF;ENST00000471565.2_1_17:39680334-39680852:-|nuORF;chr17:41524405-41524493|111|56.15|0.09|9.34|-|0|None,KRT19|1;chr17:41524247-41524493|158|264.8|0.34|9.6|-|0|None,KRT19|1	CON__P08727	CON__P08727	MULTI-MSMS	OvCa9_classI_Rep4_	4	415.722900390625	2	415.721967	829.429381	1.1479	0.00047721	-0.90578	-0.00037655	0.24213	0.00010066	415.72150864492863	67.981	1.2731	64.491	64.186	65.459	-3.4902					47	25	3	0	0	0	0.043101	1	5021	5021		124.08	5.337	1	380390		+	14753	625	11985	12001	16277	16277					0.007843523122346596
GQVGGQVSV	9	Unmodified	_GQVGGQVSV_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;ENST00000468880.1_1_17:39680334-39681232:-|nuORF;ENST00000471565.2_1_17:39680334-39680852:-|nuORF;chr17:41524405-41524493|111|56.15|0.09|9.34|-|0|None,KRT19|1;chr17:41524247-41524493|158|264.8|0.34|9.6|-|0|None,KRT19|1	CON__P08727	CON__P08727	MULTI-MATCH	OvCa9_classI_Rep2	2		2	415.721967	829.429381	-0.090268	-3.7526E-05	-0.11416	-4.7457E-05	-0.20442	-8.4983E-05	415.7219472035158	67.479	1.1846	64.818	64.397	65.581	-2.661	-0.16954	0.00013761	NaN	162.25	32	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45189		+	14754	625	11985	12001							0.007843523122346596
GQVIIHNI	8	Unmodified	_GQVIIHNI_					0	0	0		ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	447.2652282714844	2	447.263802	892.513051	1.1039	0.00049375	-1.0047	-0.00044937	0.099228	4.4381E-05	447.2632104502525	72.053	1.3625	72.053	71.792	73.155	0					61	33	4	0	0	0	0.17531	2	6982	6982;7007		128.86	31.388	1	6040000			14755	4348	11986	12002	16278;16279	16278					0.06249508479936594
GQVIWVNN	8	Unmodified	_GQVIWVNN_					0	0	0		nc|ENSG00000185664|P40967-4|PMEL;nc|ENSG00000185664|P40967-5|PMEL;ENSG00000185664|ENST00000548747|PMEL;nc|ENSG00000185664|P40967-2|PMEL;ENST00000549413.1_1_12:56355068-56359795:-|nuORF;ENST00000550590.5_1_12:56352149-56359825:-|nuORF	nc|ENSG00000185664|P40967-4|PMEL	nc|ENSG00000185664|P40967-4|PMEL	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.2815856933594	2	465.245609	928.476666	2.0155	0.00093771	3.1422	0.0014619	5.1577	0.0023996	465.24690700647204	77.596	0.41992	77.596	77.381	77.801	0					12	9	2	0	0	0	0.028476	1	7814	7814		10.866	0	1	170600			14756	8273	11987	12003	16280	16280					0.009566315832330474
GQVKLTKAV	9	Unmodified	_GQVKLTKAV_					0	0	0		ENSG00000102034|ENST00000308167|ELF4	ENSG00000102034|ENST00000308167|ELF4	ENSG00000102034|ENST00000308167|ELF4	MULTI-MSMS	OvCa99_classI_Rep5	1	472.2998046875	2	472.300384	942.586216	-0.21824	-0.00010307	-0.12433	-5.8722E-05	-0.34257	-0.0001618	472.3001669903305	42.775	0.47375	42.775	42.583	43.057	0					28	10	4	0	0	0	0.34132	1	2774	2774		58.23	12.258	1	832710			14757	2219	11988	12004	16281	16281					0.11262637202548831
GQVLKSKPN	9	Unmodified	_GQVLKSKPN_					0	0	0		chr1:173866567-173866991|187|10.29|0.21|5.62|-|0|GAS5,GAS5|1	chr1:173866567-173866991|187|10.29|0.21|5.62|-|0|GAS5,GAS5|1	chr1:173866567-173866991|187|10.29|0.21|5.62|-|0|GAS5,GAS5|1	MULTI-MSMS	OvCa99_classI_Rep5	1	485.7896728515625	2	485.787641	969.56073	-1.0564	-0.00051321	0.91019	0.00044216	-0.14626	-7.1051E-05	485.7879805007298	69.866	1.1699	69.866	69.433	70.603	0					65	28	4	0	0	0	0.3249	1	6688	6688		60.118	1.3363	1	13485000			14758	249	11989	12005	16282	16282					0.07473162680128098
GQVLMPKR	8	Unmodified	_GQVLMPKR_					0	0	0			REV__ENST00000570209.1_1_15:31108772-31126588:+|nuORF	REV__ENST00000570209.1_1_15:31108772-31126588:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	464.2797546386719	2	464.77348	927.532406	-1.0853	-0.0005044	-0.11219	-5.2144E-05	-1.1975	-0.00055654	464.7736800809573	83.108	1.1465	80.811	79.785	80.932	-2.2963					37	22	3	0	0	0	0.028476	1	4730	4730		57.811	24.296	1	167990	+		14759	27737	11990	12006	16283	16283					0.06574141499197594
GQVLMPKR	8	Unmodified	_GQVLMPKR_					0	0	0			REV__ENST00000570209.1_1_15:31108772-31126588:+|nuORF	REV__ENST00000570209.1_1_15:31108772-31126588:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	464.77348	927.532406	-0.38106	-0.0001771	3.1726	0.0014745	2.7915	0.0012974	464.7749239932654	83.368	0.24474	80.705	80.534	80.779	-2.6629	-0.053127	0.001219	NaN	57.811	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28343	+		14760	27737	11990	12006							0.06574141499197594
GQVLSRTL	8	Unmodified	_GQVLSRTL_					0	0	0			REV__ENST00000486845.1_1_6:33382128-33382646:+|nuORF	REV__ENST00000486845.1_1_6:33382128-33382646:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	437.2622375488281	2	437.261259	872.507966	1.0272	0.00044914	-0.91919	-0.00040193	0.10798	4.7215E-05	437.2607214280161	64.828	0.52312	64.828	64.588	65.111	0					44	12	5	0	0	0	0.3457	1	5910	5910		98.629	0	1	1656700	+		14761	26590	11991	12007	16284	16284					0.06661204617319072
GQVTEAVKV	9	Unmodified	_GQVTEAVKV_					0	0	0		ENST00000498771.5_1_7:134132683-134136556:-|nuORF;ENSG00000085662|ENST00000285930|AKR1B1;AKR1B1|p.E121Nfs*34|1|0.06|ENSG00000085662|chr7:134449788-134449788|C/-|frameshift_variant;ENST00000489022.5_1_7:134133851-134143844:-|nuORF;ENST00000484592.5_1_7:134134339-134143844:-|nuORF	ENST00000498771.5_1_7:134132683-134136556:-|nuORF	ENST00000498771.5_1_7:134132683-134136556:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	465.76763916015625	2	465.766374	929.518196	-0.3007	-0.00014006	0.31696	0.00014763	0.01626	7.5733E-06	465.76631294082665	59.982	0.87554	59.982	59.726	60.602	0					56	21	4	0	0	0	0.17606	1	5210	5210		80.455	0.74203	1	2199500			14762	1735	11992	12008	16285	16285					0.05061767551910634
GQVTEKLQLT	10	Unmodified	_GQVTEKLQLT_					0	0	0		ITGA9|p.V741Gfs*12|1|0.08|ENSG00000144668|chr3:37736969-37736970|-/G|frameshift_variant;ITGA9|p.T742Lfs*28|1|0.06|ENSG00000144668|chr3:37736971-37736972|-/GTTGCAAATATTAGACCATTGCC|frameshift_variant;ENSG00000144668|ENST00000264741|ITGA9	ITGA9|p.V741Gfs*12|1|0.08|ENSG00000144668|chr3:37736969-37736970|-/G|frameshift_variant	ITGA9|p.V741Gfs*12|1|0.08|ENSG00000144668|chr3:37736969-37736970|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	558.8170776367188	2	558.816596	1115.61864	0.30325	0.00016946	0.12276	6.86E-05	0.42601	0.00023806	558.8161111583237	45.682	2.04	42.972	42.697	44.737	-2.7097					67	40	2	0	0	0	0.40664	1	2697	2697		67.494	8.7117	1	1772600			14763	5171	11993	12009	16286	16286					0.06545379814906482
GQVTEKLQLT	10	Unmodified	_GQVTEKLQLT_					0	0	0		ITGA9|p.V741Gfs*12|1|0.08|ENSG00000144668|chr3:37736969-37736970|-/G|frameshift_variant;ITGA9|p.T742Lfs*28|1|0.06|ENSG00000144668|chr3:37736971-37736972|-/GTTGCAAATATTAGACCATTGCC|frameshift_variant;ENSG00000144668|ENST00000264741|ITGA9	ITGA9|p.V741Gfs*12|1|0.08|ENSG00000144668|chr3:37736969-37736970|-/G|frameshift_variant	ITGA9|p.V741Gfs*12|1|0.08|ENSG00000144668|chr3:37736969-37736970|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.8168334960938	2	558.816596	1115.61864	0.090881	5.0786E-05	-0.054252	-3.0317E-05	0.036629	2.0469E-05	558.8161517620805	45.974	2.6143	42.901	42.613	45.228	-3.0724					111	50	3	0	0	0	0.13777	2	2401	2401;2425		104.06	5.4482	1	5957700			14764	5171	11993	12009	16287;16288	16287					0.06545379814906482
GQWASVIRV	9	Unmodified	_GQWASVIRV_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;SF3B3|p.K976Dfs*14|1|0.12|ENSG00000189091|chr16:70567509-70567510|-/GACTATTTTACCATAATTTTTA|frameshift_variant;nc|ENSG00000189091|Q15393-3|SF3B3;ENST00000562722.1_1_16:70597761-70599451:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OvCa99_classI_Rep5	1	508.2893371582031	2	508.287808	1014.56106	2.3858	0.0012127	0.27482	0.00013969	2.6606	0.0013523	508.28790736756616	99.562	0.6657	99.562	99.361	100.03	0					40	15	4	0	0	0	0.051592	1	11002	11002		117.81	9.7236	1	7247800			14765	8533	11994	12010	16289	16289					0.05436582400000134
GQWASVIRV	9	Unmodified	_GQWASVIRV_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;SF3B3|p.K976Dfs*14|1|0.12|ENSG00000189091|chr16:70567509-70567510|-/GACTATTTTACCATAATTTTTA|frameshift_variant;nc|ENSG00000189091|Q15393-3|SF3B3;ENST00000562722.1_1_16:70597761-70599451:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	508.287808	1014.56106	-1.2152	-0.00061765	4.5738	0.0023248	3.3587	0.0017072	508.28873353645866	100.54	0.84357	99.711	99.36	100.2	-0.83052	0.074472	0.0042503	NaN	117.81	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14426			14766	8533	11994	12010							0.05436582400000134
GQWEVKKI	8	Unmodified	_GQWEVKKI_					0	0	0		ENST00000477547.6_1_3:10345637-10359739:-|nuORF;nc|ENSG00000157020|P55735-2|SEC13;ENSG00000157020|ENST00000350697|SEC13;nc|ENSG00000157020|P55735-4|SEC13;nc|ENSG00000157020|P55735-3|SEC13;ENST00000397105.7_1_3:10353516-10362775:-|nuORF;ENST00000479868.6_1_3:10342947-10354476:-|nuORF;ENST00000482647.5_1_3:10353516-10354476:-|nuORF	ENST00000477547.6_1_3:10345637-10359739:-|nuORF	ENST00000477547.6_1_3:10345637-10359739:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	494.2852478027344	2	494.284734	986.554916	-0.18377	-9.0836E-05	-0.43615	-0.00021558	-0.61992	-0.00030642	494.2844598093376	56.812	1.0682	56.812	56.498	57.566	0					70	24	4	0	0	0	0.40178	1	4723	4723		87.696	2.7809	1	11090000			14767	5870	11995	12011	16290	16290					0.0611006416845612
GQWKEEQKL	9	Unmodified	_GQWKEEQKL_					0	0	0		ENST00000477547.6_1_3:10345637-10359739:-|nuORF;nc|ENSG00000157020|P55735-2|SEC13;ENSG00000157020|ENST00000350697|SEC13;nc|ENSG00000157020|P55735-4|SEC13;nc|ENSG00000157020|P55735-3|SEC13;ENST00000479868.6_1_3:10342947-10354476:-|nuORF	ENST00000477547.6_1_3:10345637-10359739:-|nuORF	ENST00000477547.6_1_3:10345637-10359739:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	573.30126953125	2	573.301113	1144.58767	0.034265	1.9644E-05	-0.61406	-0.00035204	-0.57979	-0.0003324	573.3007359939663	46.304	1.3551	46.304	46.024	47.379	0					82	30	5	0	0	0	0.011767	3	3274	3247;3274;3314		163.15	39.071	1	20940000			14768	5870	11996	12012	16291;16292;16293	16292					0.02116226500652374
GQWKKGFVL	9	Unmodified	_GQWKKGFVL_					0	0	0		nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1;ENST00000484880.1_1_1:67885652-67890638:-|nuORF	nc|ENSG00000142864|Q8NC51-4|SERBP1	nc|ENSG00000142864|Q8NC51-4|SERBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	531.8091430664062	2	531.808377	1061.6022	0.83498	0.00044405	-0.43867	-0.00023329	0.39631	0.00021076	531.8081624663183	74.345	3.5344	74.345	74.095	77.629	0					243	87	5	0	0	0	0.042513	5	7354	7327;7354;7384;7414;7489		124.59	51.438	1	144990000			14769	4997	11997	12013	16294;16295;16296;16297;16298	16295					0.0738634343947524
GQWKKGFVL	9	Unmodified	_GQWKKGFVL_					0	0	0		nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1;ENST00000484880.1_1_1:67885652-67890638:-|nuORF	nc|ENSG00000142864|Q8NC51-4|SERBP1	nc|ENSG00000142864|Q8NC51-4|SERBP1	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8060302734375	2	531.808377	1061.6022	-0.91057	-0.00048425	-0.16512	-8.7813E-05	-1.0757	-0.00057206	531.8082920504281	78.41	2.6713	76.671	76.301	78.972	-1.7398					132	52	4	0	0	0	0.12365	8	6574	6544;6556;6562;6568;6574;6580;6589;6594		90.777	30.483	1	952730			14770	4997	11997	12013	16299;16300;16301;16302;16303;16304;16305;16306	16303					0.0738634343947524
GQWKKGFVL	9	Unmodified	_GQWKKGFVL_					0	0	0		nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1;ENST00000484880.1_1_1:67885652-67890638:-|nuORF	nc|ENSG00000142864|Q8NC51-4|SERBP1	nc|ENSG00000142864|Q8NC51-4|SERBP1	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8084716796875	2	531.808377	1061.6022	0.28276	0.00015037	-1.1993	-0.0006378	-0.91654	-0.00048742	531.8079007382184	78.921	2.6239	76.581	76.315	78.939	-2.3399					123	51	3	0	0	0	0.11171	3	4236	4220;4230;4236		94.006	30.97	1	1191000			14771	4997	11997	12013	16307;16308;16309	16309					0.0738634343947524
GQWKKGFVL	9	Unmodified	_GQWKKGFVL_					0	0	0		nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1;ENST00000484880.1_1_1:67885652-67890638:-|nuORF	nc|ENSG00000142864|Q8NC51-4|SERBP1	nc|ENSG00000142864|Q8NC51-4|SERBP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8090209960938	2	531.808377	1061.6022	-1.4078	-0.00074871	0.20045	0.0001066	-1.2074	-0.0006421	531.8085472351448	79.572	2.0368	76.821	76.514	78.551	-2.7514					126	41	4	0	0	0	0.091859	2	6463	6452;6463		99.375	33.91	1	1401300			14772	4997	11997	12013	16310;16311	16311					0.0738634343947524
GQWLGGRQI	9	Unmodified	_GQWLGGRQI_					0	0	0		nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1;ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF;nc|ENSG00000116001|P31483-3|TIA1;ENST00000474699.1_1_2:70443958-70451859:-|nuORF;ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF	nc|ENSG00000116001|P31483-2|TIA1;ENST00000497671.5_1_10:121335179-121339984:-|nuORF	nc|ENSG00000116001|P31483-2|TIA1	MULTI-MSMS	OvCa99_classI_Rep5	1	507.7782287597656	2	507.777608	1013.54066	2.1655	0.0010996	-2.6687	-0.0013551	-0.50317	-0.0002555	507.7772519254924	77.024	1.5347	77.024	76.558	78.093	0					62	36	2	0	0	0	0.062324	2	7750	7735;7750		111.65	29.343	1	22051000			14773	3147;5595	11998	12014	16312;16313	16313					0.03443411740192914
GQWLLRFRV	9	Unmodified	_GQWLLRFRV_					0	0	0		ENST00000303372.6_1_12:124155684-124155726:+|nuORF	ENST00000303372.6_1_12:124155684-124155726:+|nuORF	ENST00000303372.6_1_12:124155684-124155726:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	587.8472290039062	2	587.845825	1173.6771	2.1374	0.0012565	-0.24702	-0.00014521	1.8904	0.0011112	587.8456426252047	107.42	1.9618	107.42	107.14	109.11	0					101	45	5	0	0	0	0.46377	1	12130	12130		45.952	1.5748	1	20291000			14774	10212	11999	12015	16314	16314					0.09720525970669769
GQYGNPLNK	9	Unmodified	_GQYGNPLNK_					0	0	0		ADAM10|p.C344*|1|0.17|ENSG00000137845|chr15:58633331-58633341|ACTTTTTTCAC/-|frameshift_variant;ENSG00000137845|ENST00000260408|ADAM10;ENST00000560608.5_1_15:58971480-59041769:-|nuORF;ENST00000561149.1_1_15:58974496-59041769:-|nuORF;ENST00000558733.5_1_15:58947546-59041769:-|nuORF	ADAM10|p.C344*|1|0.17|ENSG00000137845|chr15:58633331-58633341|ACTTTTTTCAC/-|frameshift_variant	ADAM10|p.C344*|1|0.17|ENSG00000137845|chr15:58633331-58633341|ACTTTTTTCAC/-|frameshift_variant	MSMS	OvCa9_classI_Rep4_	4	495.7562255859375	2	495.753798	989.493044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.017	1	52.722	52.222	53.222	-3.2944								0	0	0	0.036084	1	3561	3561		84.916	18.486	1				14775	27	12000	12016	16315	16315					-0.0021228725066748666
GQYPRALEL	9	Unmodified	_GQYPRALEL_					0	0	0		ENSG00000167208|ENST00000330943|SNX20	ENSG00000167208|ENST00000330943|SNX20	ENSG00000167208|ENST00000330943|SNX20	MULTI-MSMS	OvCa99_classI_Rep5	1	523.7861938476562	2	523.785099	1045.55564	1.3651	0.000715	1.4747	0.00077241	2.8397	0.0014874	523.7858156270621	87.339	1.0328	87.339	87.054	88.087	0					37	22	3	0	0	0	0.38969	1	9245	9245		52.937	5.2794	1	3676400			14776	6772	12001	12017	16316	16316					0.03468858817495857
GQYPRALEL	9	Unmodified	_GQYPRALEL_					0	0	0		ENSG00000167208|ENST00000330943|SNX20	ENSG00000167208|ENST00000330943|SNX20	ENSG00000167208|ENST00000330943|SNX20	MULTI-MATCH	OvCa9_classI_Rep2	2		2	523.785099	1045.55564	1.9103	0.0010006	-4.4545	-0.0023332	-2.5442	-0.0013326	523.7822611327746	88.794	0.49324	87.427	87.231	87.725	-1.3676	-0.012363	-0.0047957	NaN	52.937	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13947			14777	6772	12001	12017							0.03468858817495857
GQYPRALEL	9	Unmodified	_GQYPRALEL_					0	0	0		ENSG00000167208|ENST00000330943|SNX20	ENSG00000167208|ENST00000330943|SNX20	ENSG00000167208|ENST00000330943|SNX20	MULTI-MATCH	OvCa9_classI_Rep3	3		2	523.785099	1045.55564	-0.76443	-0.0004004	-1.4011	-0.00073386	-2.1655	-0.0011343	523.7845165375427	89.596	0.76485	87.516	87.239	88.004	-2.0805	0.076725	-0.001597	NaN	52.937	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31116			14778	6772	12001	12017							0.03468858817495857
GQYPRALEL	9	Unmodified	_GQYPRALEL_					0	0	0		ENSG00000167208|ENST00000330943|SNX20	ENSG00000167208|ENST00000330943|SNX20	ENSG00000167208|ENST00000330943|SNX20	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	523.785099	1045.55564	0.031388	1.644E-05	-2.2406	-0.0011736	-2.2092	-0.0011571	523.7840871739669	90.05	0.70091	87.475	87.1	87.801	-2.575	0.036007	-0.0024765	NaN	52.937	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24283			14779	6772	12001	12017							0.03468858817495857
GRAADPGLR	9	Unmodified	_GRAADPGLR_					0	0	0			REV__nc|ENSG00000168061|A6NKF1-2|SAC3D1	REV__nc|ENSG00000168061|A6NKF1-2|SAC3D1	MULTI-SECPEP	OvCa9_classI_Rep2	2	456.7724609375	2	456.754133	911.493713	2.0381	0.00093092	-2.3472	-0.0010721	-0.30912	-0.00014119	456.75296871383443	41.862	0.7892	39.152	38.98	39.769	-2.7097					23	15	2	0	0	0	0.027462	1	2196	2196		26.693	3.6504	1	23066	+		14780	21342	12002	12018	16317	16317					0.034425521890511845
GRAAVHRLL	9	Unmodified	_GRAAVHRLL_					0	0	0		ENST00000356098.9_1_22:51065986-51066424:-|nuORF;ENST00000395621.7_1_22:51065986-51066424:-|nuORF;ENST00000216124.9_1_22:51065986-51066424:-|nuORF	ENST00000356098.9_1_22:51065986-51066424:-|nuORF	ENST00000356098.9_1_22:51065986-51066424:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.8101501464844	2	496.809242	991.603932	-0.6855	-0.00034056	3.0856	0.0015329	2.4001	0.0011924	496.81062737885446	117.51	1.3108	116.17	115.84	117.15	-1.3444					65	24	4	0	0	0	0.50149	1	10985	10985		42.396	10.441	1	177540			14781	9664	12003	12019	16318	16318					0.10779397248074929
GRADALRVL	9	Unmodified	_GRADALRVL_					0	0	0		nc|ENSG00000126246|Q9H665-2|IGFLR1;ENSG00000126246|ENST00000246532|IGFLR1	nc|ENSG00000126246|Q9H665-2|IGFLR1	nc|ENSG00000126246|Q9H665-2|IGFLR1	MULTI-MSMS	OvCa99_classI_Rep5	1	485.7928771972656	2	485.793258	969.571963	-0.018554	-9.0134E-06	-0.69207	-0.0003362	-0.71062	-0.00034522	485.7928457225571	66.596	1.0088	66.596	66.328	67.337	0					54	24	4	0	0	0	0.34132	2	6170	6170;6197		58.23	12.159	1	11694000			14782	3773	12004	12020	16319;16320	16319					0.08595984774274257
GRADGCHL	8	Unmodified	_GRADGCHL_					0	0	0			REV__tr|A0A7D7AEH6|A0A7D7AEH6_9CLOTPTSlactose/cellobiosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_02565PE=4SV=1	REV__tr|A0A7D7AEH6|A0A7D7AEH6_9CLOTPTSlactose/cellobiosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_02565PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.2350158691406	2	414.692687	827.37082	-0.4856	-0.00020137	-1.1373	-0.00047165	-1.6229	-0.00067302	414.6915490066351	43.742	0.38784	43.742	43.478	43.866	0					11	8	2	0	0	0	0.028476	1	2902	2902		33.516	0	1	44545	+		14783	32705	12005	12021	16321	16321					-0.049770275338801184
GRAEIIRYI	9	Unmodified	_GRAEIIRYI_					0	0	0		HPGDS|p.L54Wfs*12|1|0.82|ENSG00000163106|chr4:94317938-94317938|A/-|frameshift_variant;ENSG00000163106|ENST00000295256|HPGDS	HPGDS|p.L54Wfs*12|1|0.82|ENSG00000163106|chr4:94317938-94317938|A/-|frameshift_variant	HPGDS|p.L54Wfs*12|1|0.82|ENSG00000163106|chr4:94317938-94317938|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	545.8231201171875	2	545.822015	1089.62948	1.868	0.0010196	-0.17904	-9.7722E-05	1.6889	0.00092186	545.8219352960451	77.602	0.9249	77.602	77.168	78.093	0					40	21	3	0	0	0	0.22035	1	7836	7836		72.879	19.943	1	1583000			14784	6267	12006	12022	16322	16322					0.08824826979844147
GRAEIIRYI	9	Unmodified	_GRAEIIRYI_					0	0	0		HPGDS|p.L54Wfs*12|1|0.82|ENSG00000163106|chr4:94317938-94317938|A/-|frameshift_variant;ENSG00000163106|ENST00000295256|HPGDS	HPGDS|p.L54Wfs*12|1|0.82|ENSG00000163106|chr4:94317938-94317938|A/-|frameshift_variant	HPGDS|p.L54Wfs*12|1|0.82|ENSG00000163106|chr4:94317938-94317938|A/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	545.822015	1089.62948	0.0025075	1.3686E-06	-3.2097	-0.0017519	-3.2072	-0.0017505	545.8201813667607	79.601	0.65633	77.261	77.053	77.709	-2.3399	-0.17045	-0.0029068	NaN	72.879	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21001			14785	6267	12006	12022							0.08824826979844147
GRAENSSARVP	11	Unmodified	_GRAENSSARVP_					0	0	0		chr3:129268620-129271779|145|21.7|0.01|10.98|+|1|COPG1,None|1	chr3:129268620-129271779|145|21.7|0.01|10.98|+|1|COPG1,None|1	chr3:129268620-129271779|145|21.7|0.01|10.98|+|1|COPG1,None|1	MSMS	OvCa99_classI_Rep5	1	572.2965698242188	2	572.296893	1142.57923	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33	1	33	32.5	33.5	0								0	0	0	0.19422	1	1483	1483		32.812	1.2826	1				14786	471	12007	12023	16323	16323					0.013646725840317231
GRAERILELR	10	Unmodified	_GRAERILELR_					0	0	0		ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	MULTI-MSMS	OvCa99_classI_Rep5	1	404.911865234375	3	404.910561	1211.70985	0.92596	0.00037493	-0.93181	-0.0003773	-0.0058472	-2.3676E-06	404.91020096944607	54.11	1.3734	54.11	53.733	55.107	0					83	32	4	0	0	0	0.52162	1	4333	4333		51.528	1.4942	1	15759000			14787	4972	12008	12024	16324	16324					0.11246688302890107
GRAGWAAR	8	Unmodified	_GRAGWAAR_					0	0	0			REV__ENST00000252485.8_1_19:45381953-45382088:+|nuORF	REV__ENST00000252485.8_1_19:45381953-45382088:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	422.5499267578125	2	422.730461	843.446369	-2.1518	-0.00090963	0.77345	0.00032696	-1.3784	-0.00058267	422.73063401928766	37.23	0.73824	34.52	34.337	35.075	-2.7097					24	14	2	0	0	0	0.028476	1	1639	1639		19.36	0	1	40882	+		14788	23866	12009	12025	16325	16325					0.01838317708688919
GRAKPIDLL	9	Unmodified	_GRAKPIDLL_					0	0	0		ENSG00000105298|ENST00000429344|CACTIN;nc|ENSG00000105298|Q8WUQ7-2|CACTIN	ENSG00000105298|ENST00000429344|CACTIN	ENSG00000105298|ENST00000429344|CACTIN	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.7882080078125	2	491.805834	981.597115	-0.11061	-5.44E-05	-0.345	-0.00016968	-0.45562	-0.00022408	491.80557417864543	32.577	0.34488	32.577	32.403	32.748	0					11	6	2	0	0	0	0.027462	1	1415	1415		10.866	0	1	84879			14789	2440	12010	12026	16326	16326					0.10558039576847023
GRALHKIT	8	Unmodified	_GRALHKIT_					0	0	0			REV__ENST00000454360.1_1_22:17054334-17055434:+|nuORF	REV__ENST00000454360.1_1_22:17054334-17055434:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	447.7383728027344	2	448.277244	894.539935	0.50655	0.00022708	-2.6338	-0.0011807	-2.1273	-0.0009536	448.27698682253254	46.858	0.57611	46.858	46.545	47.121	0					22	12	3	0	0	0	0.028476	1	3301	3301		19.36	0	1	110530	+		14790	26002	12011	12027	16327	16327					0.08844617091131113
GRALLEQLH	9	Unmodified	_GRALLEQLH_					0	0	0			REV__ENSG00000185915|ENST00000379499|KLHL34	REV__ENSG00000185915|ENST00000379499|KLHL34	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.3328857421875	2	518.79854	1035.58253	0.6728	0.00034905	-0.59634	-0.00030938	0.076459	3.9667E-05	518.7980271834748	71.409	2.3298	68.807	68.331	70.661	-2.6023					115	46	4	0	0	0	0.027433	1	3462	3462		42.396	0	1	304290	+		14791	22543	12012	12028	16328	16328					0.06615967428706426
GRALLLFF	8	Unmodified	_GRALLLFF_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-SECPEP	OvCa9_classI_Rep2	2	469.7500305175781	2	468.786913	935.559273	-1.2454	-0.00058382	-3.1347	-0.0014695	-4.3801	-0.0020533	468.7853219515218	68.258	0.94041	65.638	65.376	66.316	-2.6203					28	18	2	0	0	0	0.028476	1	5375	5375		29.842	21.61	1	41088	+		14792	29089	12013	12029	16329	16329					0.08891573382038587
GRALPPLRRAL	11	Unmodified	_GRALPPLRRAL_					0	0	0		ENST00000553066.5_1_12:56551506-56551743:+|nuORF	ENST00000553066.5_1_12:56551506-56551743:+|nuORF	ENST00000553066.5_1_12:56551506-56551743:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	407.2633056640625	3	407.263046	1218.76731	1.8047	0.00073498	-1.5999	-0.00065158	0.20477	8.3394E-05	407.26226398347274	67.562	1.5001	64.675	64.341	65.841	-2.8873					59	29	3	0	0	0	0.69735	1	2881	2881		30.569	1.3988	1	125720			14793	13618	12014	12030	16330	16330					0.16667575299152304
GRALPPLRRAL	11	Unmodified	_GRALPPLRRAL_					0	0	0		ENST00000553066.5_1_12:56551506-56551743:+|nuORF	ENST00000553066.5_1_12:56551506-56551743:+|nuORF	ENST00000553066.5_1_12:56551506-56551743:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	407.263046	1218.76731	2.0237	0.00082416	-2.2115	-0.00090068	-0.1879	-7.6523E-05	407.262062894852	68.231	1.0771	64.741	64.382	65.459	-3.4902	0.033127	-0.00051097	NaN	30.569	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70180			14794	13618	12014	12030							0.16667575299152304
GRALVAVK	8	Unmodified	_GRALVAVK_					0	0	0		ENSG00000105428|ENST00000222033|ZNRF4	ENSG00000105428|ENST00000222033|ZNRF4	ENSG00000105428|ENST00000222033|ZNRF4	MULTI-MSMS	OvCa99_classI_Rep5	1	407.2689208984375	2	407.268887	812.523222	0.69881	0.0002846	-0.15752	-6.4152E-05	0.54129	0.00022045	407.26869117508505	42.518	0.81417	42.518	42.286	43.1	0					42	18	3	0	0	0	0.65582	1	2729	2729		52.299	0	1	2444500			14795	2458	12015	12031	16331	16331					0.10946116205172984
GRAPLNESI	9	Unmodified	_GRAPLNESI_					0	0	0			REV__ENST00000223095.4_1_7:100781944-100782070:+|nuORF	REV__ENST00000223095.4_1_7:100781944-100782070:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	479.32012939453125	2	478.761623	955.508694	-0.33981	-0.00016269	4.2291	0.0020247	3.8893	0.0018621	478.7629613426342	100.73	0.85361	99.12	98.802	99.656	-1.6053					18	16	2	0	0	0	0.027433	1	6898	6898		51.335	0	1	18678	+		14796	23754	12016	12032	16332	16332					0.02915999266383551
GRARSSERRRR	11	Unmodified	_GRARSSERRRR_					0	0	0		ENST00000300952.6_1_19:1248633-1250009:+|nuORF	ENST00000300952.6_1_19:1248633-1250009:+|nuORF	ENST00000300952.6_1_19:1248633-1250009:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	462.93658447265625	3	462.934763	1385.78246	0.079191	3.666E-05	3.9218	0.0018156	4.001	0.0018522	462.9367014144655	44.408	4.3763	41.698	41.303	45.679	-2.7097					263	87	6	0	0	0	0.60035	1	2499	2499		44.639	9.4612	1	4456400			14797	10177	12017	12033	16333	16333					0.1049983514901669
GRATHAVVRAL	11	Unmodified	_GRATHAVVRAL_					0	0	0		ENSG00000153904|ENST00000284031|DDAH1	ENSG00000153904|ENST00000284031|DDAH1	ENSG00000153904|ENST00000284031|DDAH1	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8436889648438	2	575.843813	1149.67307	-0.33973	-0.00019563	-0.25402	-0.00014628	-0.59375	-0.00034191	575.8433458482052	142.38	3.7668	140.93	139.05	142.82	-1.4532					179	72	3	0	0	0	0.72064	1	13862	13862		22.58	0.61977	1	165140			14798	5700	12018	12034	16334	16334					0.10422436476983421
GRAVEHAM	8	Oxidation (M)	_GRAVEHAM(Oxidation (M))_		GRAVEHAM(1)		GRAVEHAM(44)	0	0	1		ENSG00000164976|ENST00000297625|MYORG	ENSG00000164976|ENST00000297625|MYORG	ENSG00000164976|ENST00000297625|MYORG	MULTI-MSMS	OvCa99_classI_Rep5	1	443.71728515625	2	443.713619	885.412685	0.91159	0.00040448	3.6258	0.0016088	4.5374	0.0020133	443.7151174907231	58.468	0.77876	58.468	58.194	58.973	0					31	18	2	0	0	0	0.6962	1	4962	4962		44.117	7.0883	1	3739600			14799	6507	12019	12035	16335	16335		204			-0.03460471845357915
GRCFRSKPYP	10	Unmodified	_GRCFRSKPYP_					0	0	0			REV__ENST00000489200.5_1_X:153626749-153627742:+|nuORF	REV__ENST00000489200.5_1_X:153626749-153627742:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	604.8189697265625	2	605.811125	1209.6077	0.15457	9.364E-05	-0.095303	-5.7735E-05	0.059267	3.5904E-05	606.3127309858618	48.355	0.46339	45.247	45.039	45.502	-3.1077					15	8	3	0	0	0	0.027187	1	2680	2680		14.137	0	1	25099	+		14800	20061	12020	12036	16336	16336					0.011276989596353815
GRCGGGGSR	9	Unmodified	_GRCGGGGSR_					0	0	0			REV__ENST00000348370.8_1_15:59279867-59279987:+|nuORF	REV__ENST00000348370.8_1_15:59279867-59279987:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.9290466308594	2	403.687936	805.361318	0.92023	0.00037149	-1.4734	-0.00059478	-0.55314	-0.00022329	403.6872734276548	51.67	0.49225	51.67	51.461	51.953	0					14	11	2	0	0	0	0.027461	1	3995	3995		32.812	3.6629	1	203220	+		14801	24708	12021	12037	16337	16337					-0.04914795819411211
GRCIDGQCICD	11	Unmodified	_GRCIDGQCICD_					0	0	0		nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC;TNC|p.D866Gfs*3|1|0.06|ENSG00000041982|chr9:115078020-115078021|-/C|frameshift_variant	nc|ENSG00000041982|P24821-6|TNC	nc|ENSG00000041982|P24821-6|TNC	MULTI-SECPEP	OvCa99_classI_Rep5	1	591.8114013671875	2	591.738651	1181.46275	1.953	0.0011557	3.4667	0.0020514	5.4197	0.003207	592.2424999024759	117.41	0.5192	117.41	117.18	117.7	0					15	10	2	0	0	0	0.025457	1	13468	13468		29.17	0	1	43603			14802	1119	12022	12038	16338	16338					-0.12072473294028896
GRDAGVGGLTQ	11	Unmodified	_GRDAGVGGLTQ_					0	0	0		nc|ENSG00000071564|P15923-2|TCF3;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3	nc|ENSG00000071564|P15923-2|TCF3	nc|ENSG00000071564|P15923-2|TCF3	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.3082275390625	2	515.767437	1029.52032	-0.17814	-9.188E-05	-2.8009	-0.0014446	-2.9791	-0.0015365	515.7659050575053	98.23	0.58759	97.337	97.12	97.707	-0.89305					15	11	2	0	0	0	0.025496	1	8915	8915		55.084	12.688	1	19656			14803	1453	12023	12039	16339	16339					0.0067419628969673795
GRDAGVGGLTQ	11	Unmodified	_GRDAGVGGLTQ_					0	0	0		nc|ENSG00000071564|P15923-2|TCF3;ENSG00000071564|ENST00000262965|TCF3;nc|ENSG00000071564|P15923-3|TCF3	nc|ENSG00000071564|P15923-2|TCF3	nc|ENSG00000071564|P15923-2|TCF3	MULTI-MATCH	OvCa99_classI_Rep5	1		2	515.767437	1029.52032	2.4547	0.0012661	-9.6145	-0.0049588	-7.1598	-0.0036928	515.7626606082432	97.286	0.55598	97.286	96.966	97.522	0	-0.065645	-0.0030458	NaN	52.167	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	264930			14804	1453	12023	12039							0.0067419628969673795
GRDCSVCH	8	Unmodified	_GRDCSVCH_					0	0	0		ENSG00000081052|ENST00000396625|COL4A4	ENSG00000081052|ENST00000396625|COL4A4	ENSG00000081052|ENST00000396625|COL4A4	MULTI-MSMS	OvCa9_classI_Rep4_	4	439.17864990234375	2	438.676179	875.337806	1.0807	0.00047406	1.7773	0.00077966	2.858	0.0012537	438.6763043399398	129.12	0.79001	127.66	127.4	128.19	-1.4565					64	15	6	0	0	0	0.75723	1	12349	12349		23.042	1.3402	1	96001			14805	1652	12024	12040	16340	16340					-0.10484977648241056
GRDPALPT	8	Unmodified	_GRDPALPT_					0	0	0		ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;MOGS|p.P775Lfs*21|1|0.12|ENSG00000115275|chr2:74461466-74461467|-/CAAATCTGGCAAAAGCAATAGAGTTCAA|frameshift_variant;ENSG00000115275|ENST00000448666|MOGS	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.2113342285156	2	413.72451	825.434466	0.094615	3.9145E-05	1.1427	0.00047275	1.2373	0.00051189	413.72473365555413	50.518	0.48486	50.518	50.245	50.73	0					16	10	2	0	0	0	0.028476	1	3860	3860		27.882	0	1	113610			14806	3081	12025	12041	16341	16341					0.014766561748501772
GRDRLTQV	8	Unmodified	_GRDRLTQV_					0	0	0			REV__tr|A0A7D6VUT6|A0A7D6VUT6_9CLOTTranscription-repair-couplingfactorOS=ClostridiumintestinaleOX=36845GN=mfdPE=3SV=1	REV__tr|A0A7D6VUT6|A0A7D6VUT6_9CLOTTranscription-repair-couplingfactorOS=ClostridiumintestinaleOX=36845GN=mfdPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	472.2833557128906	2	472.76724	943.519927	-5.04	-0.0023828	-2.9907	-0.0014139	-8.0307	-0.0037967	472.7657046926894	159.18	0.71344	158.96	158.68	159.4	-0.22696					18	13	2	0	0	0	0.028476	1	16146	16146		10.265	0.5596	1	27490	+		14807	31693	12026	12042	16342	16342					0.04590821360523023
GREALEQP	8	Unmodified	_GREALEQP_					0	0	0			REV__ENSG00000253485|ENST00000518069|PCDHGA5	REV__ENSG00000253485|ENST00000518069|PCDHGA5	MULTI-SECPEP	OvCa99_classI_Rep5	1	449.7590026855469	2	450.232699	898.450845	0.95805	0.00043135	-0.55306	-0.00024901	0.40499	0.00018234	450.23247559383225	45.601	0.42672	45.601	45.373	45.8	0					11	9	2	0	0	0	0.028476	1	3184	3184		79.451	16.145	1	205730	+		14808	23504	12027	12043	16343	16343					-0.0024426265905503897
GREHFWKN	8	Unmodified	_GREHFWKN_					0	0	0			REV__nc|ENSG00000072682|O15460|P4HA2	REV__nc|ENSG00000072682|O15460|P4HA2	MULTI-MSMS	OvCa99_classI_Rep5	1	537.2706298828125	2	537.267407	1072.52026	2.6082	0.0014013	1.9357	0.00104	4.5439	0.0024413	537.2684896382216	88.872	4.5522	88.872	88.003	92.555	0					290	110	5	0	0	0	0.66704	1	9568	9568		50.025	4.0726	1	72679000	+		14809	16919	12028	12044	16344	16344					-0.013097589196377157
GRELPATP	8	Unmodified	_GRELPATP_					0	0	0		ENST00000317008.4_1_18:77401988-77439691:-|nuORF	ENST00000317008.4_1_18:77401988-77439691:-|nuORF	ENST00000317008.4_1_18:77401988-77439691:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.752685546875	2	420.732335	839.450116	0.46013	0.00019359	-0.12054	-5.0714E-05	0.3396	0.00014288	420.7322310735939	62.498	0.40822	62.498	62.253	62.661	0					13	9	2	0	0	0	0.028476	1	5556	5556		23.042	11.531	1	138440			14810	10348	12029	12045	16345	16345					0.023969426918938552
GREPIPSDAP	10	Unmodified	_GREPIPSDAP_					0	0	0			REV__ENSG00000151348|ENST00000533608|EXT2	REV__ENSG00000151348|ENST00000533608|EXT2	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.8198852539062	2	519.764363	1037.51417	0.031616	1.6433E-05	1.909	0.00099221	1.9406	0.0010086	520.2669311653225	132.83	0.64174	131.71	131.34	131.98	-1.1249					12	12	2	0	0	0	0.026849	1	10604	10604		32.812	0	1	12412	+		14811	20224	12030	12046	16346	16346					-0.0030832194181584782
GREREEWLRW	10	Unmodified	_GREREEWLRW_					0	0	0			REV__ENST00000493723.5_1_7:24756537-24789393:-|nuORF	REV__ENST00000493723.5_1_7:24756537-24789393:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.7646179199219	3	472.90922	1415.70583	0.15269	7.2207E-05	-2.2411	-0.0010599	-2.0884	-0.00098764	473.24206208755356	55.7	1.1113	52.405	52.11	53.221	-3.2944					30	21	2	0	0	0	0.027062	1	3617	3617		20.03	7.073	1	49245	+		14812	26711	12031	12047	16347	16347					0.014605988091716426
GREREEWLRW	10	Unmodified	_GREREEWLRW_					0	0	0			REV__ENST00000493723.5_1_7:24756537-24789393:-|nuORF	REV__ENST00000493723.5_1_7:24756537-24789393:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		3	472.90922	1415.70583	0.27956	0.00013221	-1.8339	-0.00086727	-1.5544	-0.00073507	472.90841889979646	52.692	0.52242	52.692	52.434	52.956	0	0.14311	0.00011637	NaN	14.694	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	483690	+		14813	26711	12031	12047							0.014605988091716426
GREVARQLA	9	Unmodified	_GREVARQLA_					0	0	0			REV__nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	REV__nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.2677307128906	2	500.28834	998.562127	-0.12148	-6.0773E-05	3.7998	0.001901	3.6783	0.0018402	500.28998782437515	61.15	0.92278	57.72	57.395	58.318	-3.43					31	18	2	0	0	0	0.027462	1	4223	4223		20.947	5.3051	1	162960	+		14814	18817	12032	12048	16348	16348					0.06278796768890516
GREVSPVQI	9	Unmodified	_GREVSPVQI_					0	0	0			REV__ENSG00000113319|ENST00000265080|RASGRF2	REV__ENSG00000113319|ENST00000265080|RASGRF2	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.3222961425781	2	492.777274	983.539994	0.67279	0.00033153	2.3103	0.0011384	2.983	0.00147	492.7793239800312	78.877	0.50938	77.137	76.951	77.46	-1.7398					13	9	2	0	0	0	0.027433	1	6645	6645		34.173	0	1	15807	+		14815	18145	12033	12049	16349	16349					0.04756572300470907
GRFCQLLPGR	10	Unmodified	_GRFCQLLPGR_					0	0	0			REV__ENST00000301031.8_1_16:89736278-89736800:+|nuORF	REV__ENST00000301031.8_1_16:89736278-89736800:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	573.8118896484375	2	573.813667	1145.61278	-0.45988	-0.00026388	-4.1123	-0.0023597	-4.5722	-0.0026236	573.8113196281254	29.81	0.65026	29.81	29.536	30.186	0					26	12	3	0	0	0	0.65434	1	1098	1098		35.618	5.1146	1	226570	+		14816	24243	12034	12050	16350	16350					0.04580002822262941
GRFGGVITI	9	Unmodified	_GRFGGVITI_					0	0	0		ENSG00000103569|ENST00000219919|AQP9	ENSG00000103569|ENST00000219919|AQP9	ENSG00000103569|ENST00000219919|AQP9	MULTI-MSMS	OvCa99_classI_Rep5	1	460.2733154296875	2	460.271627	918.528701	1.6509	0.00075988	0.77571	0.00035704	2.4266	0.0011169	460.27186303299726	98.143	0.68399	98.143	97.912	98.596	0					43	15	4	0	0	0	0.042513	1	10794	10794		124.59	14.257	1	6217800			14817	2332	12035	12051	16351	16351					0.0661779499697559
GRFLSDLETP	10	Unmodified	_GRFLSDLETP_					0	0	0			REV__ENSG00000142677|ENST00000270800|IL22RA1	REV__ENSG00000142677|ENST00000270800|IL22RA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.274169921875	2	567.793121	1133.57169	0.16289	9.249E-05	-2.2673	-0.0012874	-2.1044	-0.0011949	567.7926757191672	31.051	0.34269	31.051	30.781	31.124	0					8	6	2	0	0	0	0.027028	1	1241	1241		24.519	0	1	66191	+		14818	19802	12036	12052	16352	16352					0.010245202637634065
GRFNIISELTN	11	Unmodified	_GRFNIISELTN_					0	0	0		tr|A0A7D7A155|A0A7D7A155_9CLOTHTHluxR-typedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14280PE=4SV=1	tr|A0A7D7A155|A0A7D7A155_9CLOTHTHluxR-typedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14280PE=4SV=1	tr|A0A7D7A155|A0A7D7A155_9CLOTHTHluxR-typedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14280PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	420.9272155761719	3	421.894577	1262.6619	1.2318	0.0005197	2.2632	0.00095483	3.495	0.0014745	422.23013129303575	69.874	0.25021	67.155	67.056	67.306	-2.7196					6	4	2	0	0	0	0.02558	1	3138	3138		35.496	7.942	1	10598			14819	36026	12037	12053	16353	16353					0.04107569592179061
GRFSENKIP	9	Unmodified	_GRFSENKIP_					0	0	0			REV__tr|A0A553SPS9|A0A553SPS9_NIACIPhoD-likephosphatasemetallophosphatasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26840PE=4SV=1	REV__tr|A0A553SPS9|A0A553SPS9_NIACIPhoD-likephosphatasemetallophosphatasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26840PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.8538208007812	2	524.282723	1046.55089	0.95313	0.00049971	3.7604	0.0019715	4.7135	0.0024712	524.2843112232749	109.27	0.57388	109.27	109.11	109.68	0					20	12	2	0	0	0	0.027462	1	12364	12364		34.173	0	1	156550	+		14820	30564	12038	12054	16354	16354					0.02947974674748366
GRFTRHLNI	9	Unmodified	_GRFTRHLNI_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3;DNAH3|p.T2544Ifs*7|1|0.16|ENSG00000158486|chr16:20985111-20985112|-/A|frameshift_variant	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	OvCa9_classI_Rep2	2	557.318115234375	2	557.317432	1112.62031	-1.9914	-0.0011099	1.5109	0.00084204	-0.48054	-0.00026782	557.3181775816473	36.131	1.4315	33.421	33.152	34.583	-2.7097					66	28	4	0	0	0	0.51865	1	1536	1536		40.778	1.5253	1	384370			14821	5956	12039	12055	16355	16355					0.06850478414162353
GRGAGGAP	8	Unmodified	_GRGAGGAP_					0	0	0			REV__ENST00000310454.10_1_2:157292030-157292273:+|nuORF	REV__ENST00000310454.10_1_2:157292030-157292273:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	641.8829956054688	1	642.331799	641.324522	-6.1977	-0.003981	-4.1266	-0.0026507	-10.324	-0.0066317	642.3289076874486	156.71	0.4169	155.53	155.24	155.65	-1.1707					10	7	2	0	0	0	0.028476	1	13460	13460		8.8223	0	1	10779	+		14822	24341	12040	12056	16356	16356					-0.010487243736861274
GRGHKKPL	8	Unmodified	_GRGHKKPL_					0	0	0			REV__ENST00000503183.1_1_5:137848440-137853282:-|nuORF	REV__ENST00000503183.1_1_5:137848440-137853282:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	446.2327880859375	2	446.777411	891.540269	1.2413	0.0005546	-2.6772	-0.0011961	-1.4359	-0.00064151	446.775509230245	60.814	0.21299	58.044	57.923	58.136	-2.7702					5	3	2	0	0	0	0.028476	1	4489	4489		19.36	11.67	1	6545.7	+		14823	18512	12041	12057	16357	16357					0.09016036810976402
GRGKGLVFR	9	Unmodified	_GRGKGLVFR_					0	0	0			REV__ENSG00000064726|ENST00000261721|BTBD1	REV__ENSG00000064726|ENST00000261721|BTBD1	MULTI-MSMS	OvCa99_classI_Rep5	1	495.3067321777344	2	495.303793	988.593033	2.0628	0.0010217	4.044	0.002003	6.1068	0.0030247	495.3055480660025	107.44	0.50002	107.44	107.19	107.69	0					31	11	4	0	0	0	0.56889	1	12113	12113		35.618	0.41757	1	2488100	+		14824	16776	12042	12058	16358	16358					0.09827994873796797
GRGKGLVFR	9	Unmodified	_GRGKGLVFR_					0	0	0			REV__ENSG00000064726|ENST00000261721|BTBD1	REV__ENSG00000064726|ENST00000261721|BTBD1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	495.303793	988.593033	2.0628	0.0010217	4.044	0.002003	6.1068	0.0030247	495.3055480660025	107.44	0.50002	107.44	107.19	107.69	0	0	0	NaN	35.618	31	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2488100	+		14825	16776	12042	12058							0.09827994873796797
GRGKGVLPIRV	11	Unmodified	_GRGKGVLPIRV_					0	0	0		ENST00000291041.5_1_16:67962406-67962595:+|nuORF	ENST00000291041.5_1_16:67962406-67962595:+|nuORF	ENST00000291041.5_1_16:67962406-67962595:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	576.3535766601562	2	576.372207	1150.72986	-0.49411	-0.00028479	-3.7651	-0.0021701	-4.2592	-0.0024549	576.3700319505408	72.128	0.49065	69.526	69.328	69.819	-2.6023					12	9	2	0	0	0	0.023945	1	3419	3419		58.23	10.573	1	48420			14826	10092	12043	12059	16359	16359					0.1605248403348014
GRGKGVLPIRV	11	Unmodified	_GRGKGVLPIRV_					0	0	0		ENST00000291041.5_1_16:67962406-67962595:+|nuORF	ENST00000291041.5_1_16:67962406-67962595:+|nuORF	ENST00000291041.5_1_16:67962406-67962595:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	576.353271484375	2	576.372207	1150.72986	-0.34471	-0.00019868	-0.1333	-7.6828E-05	-0.47801	-0.00027551	576.3718162778656	71.107	1.2544	68.387	67.957	69.211	-2.7196					49	24	3	0	0	0	0.025746	1	3384	3384		58.23	18.977	1	40151			14827	10092	12043	12059	16360	16360					0.1605248403348014
GRGKGVLPIRV	11	Unmodified	_GRGKGVLPIRV_					0	0	0		ENST00000291041.5_1_16:67962406-67962595:+|nuORF	ENST00000291041.5_1_16:67962406-67962595:+|nuORF	ENST00000291041.5_1_16:67962406-67962595:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	576.372207	1150.72986	-1.6116	-0.00092891	0.89098	0.00051353	-0.72067	-0.00041537	576.3726096336678	72.052	0.92432	68.596	68.317	69.241	-3.4563	0.10441	0.00014973	NaN	58.23	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43773			14828	10092	12043	12059							0.1605248403348014
GRGLCKLWL	9	Unmodified	_GRGLCKLWL_					0	0	0		nc|ENSG00000101180|Q9Y5N1-5|HRH3;nc|ENSG00000101180|Q9Y5N1-6|HRH3;nc|ENSG00000101180|Q9Y5N1-3|HRH3;nc|ENSG00000101180|Q9Y5N1-7|HRH3;nc|ENSG00000101180|Q9Y5N1-4|HRH3;ENSG00000101180|ENST00000340177|HRH3;nc|ENSG00000101180|Q9Y5N1-2|HRH3	nc|ENSG00000101180|Q9Y5N1-5|HRH3	nc|ENSG00000101180|Q9Y5N1-5|HRH3	MSMS	OvCa9_classI_Rep4_	4	523.3052978515625	2	523.302404	1044.59026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.28	1	137.77	137.27	138.27	-1.5129								0	0	0	0.18309	1	13572	13572		30.504	2.2494	1				14829	2145	12044	12060	16361	16361					0.06974403424624143
GRGLPLLAP	9	Unmodified	_GRGLPLLAP_					0	0	0			REV__ENST00000598369.1_1_19:53284601-53290004:-|nuORF	REV__ENST00000598369.1_1_19:53284601-53290004:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	448.2496337890625	2	447.281995	892.549437	1.1225	0.00050207	-3.7285	-0.0016677	-2.606	-0.0011656	447.2807561032039	63.285	0.74562	63.285	62.902	63.648	0					25	18	2	0	0	0	0.027462	1	5684	5684		35.201	16.876	1	807770	+		14830	24606	12045	12061	16362	16362					0.09886385376648832
GRGLPVQPHS	10	Unmodified	_GRGLPVQPHS_					0	0	0		ENSG00000206190|ENST00000555815|ATP10A;ENST00000555815.5_1_15:25924490-25961922:-|nuORF	ENSG00000206190|ENST00000555815|ATP10A	ENSG00000206190|ENST00000555815|ATP10A	MULTI-MSMS	OvCa9_classI_Rep2	2	524.2885131835938	2	524.28834	1046.56213	0.32988	0.00017295	-0.66432	-0.0003483	-0.33444	-0.00017534	524.2878628443616	44.341	1.6949	41.631	41.303	42.998	-2.7097					85	33	4	0	0	0	0.74374	1	2544	2544		25.574	2.5316	1	482610			14831	9096	12046	12062	16363	16363					0.04070796768883156
GRGPDNAL	8	Unmodified	_GRGPDNAL_					0	0	0		nc|ENSG00000110906|Q9H3F6-2|KCTD10;ENSG00000110906|ENST00000228495|KCTD10;nc|ENSG00000110906|Q9H3F6-3|KCTD10	nc|ENSG00000110906|Q9H3F6-2|KCTD10	nc|ENSG00000110906|Q9H3F6-2|KCTD10	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.2294921875	2	400.206484	798.398415	0.81671	0.00032685	-0.28777	-0.00011517	0.52894	0.00021168	400.20629203126475	40.059	0.76294	40.059	39.669	40.432	0					37	16	3	0	0	0	0.028476	1	2406	2406		71.296	19.96	1	910220			14832	2802	12047	12063	16364	16364					-0.008848010020187758
GRGPEDRARP	10	Unmodified	_GRGPEDRARP_					0	0	0		ENST00000487433.6_1_13:50070383-50071245:+|nuORF	ENST00000487433.6_1_13:50070383-50071245:+|nuORF	ENST00000487433.6_1_13:50070383-50071245:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	556.2941284179688	2	555.791778	1109.569	-0.19654	-0.00010923	3.6105	0.0020067	3.4139	0.0018974	555.7937031809605	48.477	0.98682	45.369	45.09	46.076	-3.1077					32	18	3	0	0	0	0.026931	1	2746	2746		30.318	0	1	145610			14833	12644	12048	12064	16365	16365					0.018601096494421654
GRGPGNPR	8	Unmodified	_GRGPGNPR_					0	0	0		ENST00000382952.7_2_4:1205816-1205999:-|nuORF	ENST00000382952.7_2_4:1205816-1205999:-|nuORF	ENST00000382952.7_2_4:1205816-1205999:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	405.71820068359375	2	405.720093	809.425633	-0.3042	-0.00012342	-2.914	-0.0011823	-3.2182	-0.0013057	405.7187689414806	119.3	1.6269	119.13	118.76	120.38	-0.17137					76	32	4	0	0	0	0.66704	1	11475	11475		50.025	5.4935	1	350390			14834	11183	12049	12065	16366	16366					0.013297273290390876
GRGPKRLAPSL	11	Unmodified	_GRGPKRLAPSL_					0	0	0			REV__ENST00000319080.7_12:122627539-122627764:+|nuORF	REV__ENST00000319080.7_12:122627539-122627764:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	576.3549194335938	2	576.354014	1150.69348	-0.5103	-0.00029411	-0.49695	-0.00028642	-1.0073	-0.00058053	576.3538085628105	72.001	4.4609	69.399	69.081	73.542	-2.6023					248	89	5	0	0	0	0.4646	1	3443	3443		56.434	1.6575	1	7516400	+		14835	24429	12050	12066	16367	16367					0.1241560713679064
GRGQSGAPGL	10	Unmodified	_GRGQSGAPGL_					0	0	0		ENST00000530428.1_1_11:47660592-47664057:-|nuORF	ENST00000530428.1_1_11:47660592-47664057:-|nuORF	ENST00000530428.1_1_11:47660592-47664057:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	450.2378845214844	2	450.238316	898.462078	1.4973	0.00067415	-1.6348	-0.00073604	-0.13747	-6.1893E-05	450.2374056842666	39.042	1.2362	36.332	35.816	37.052	-2.7097					58	24	3	0	0	0	0.37436	1	1879	1879		71.877	3.3928	1	142370			14836	13289	12051	12067	16368	16368					0.008785594351024884
GRGRGVPRRAR	11	Unmodified	_GRGRGVPRRAR_					0	0	0		ENST00000525036.1_1_13:48877888-48878134:+|nuORF	ENST00000525036.1_1_13:48877888-48878134:+|nuORF	ENST00000525036.1_1_13:48877888-48878134:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	619.3713989257812	2	619.376678	1236.7388	-5.5105	-0.0034131	-2.2423	-0.0013888	-7.7528	-0.0048019	619.3751482919054	158.89	0.97121	158.66	158.38	159.35	-0.22696					37	18	3	0	0	0	0.72466	1	16163	16163		19.997	0.89325	1	60403			14837	13178	12052	12068	16369	16369					0.12990270442537621
GRGRRRNL	8	Unmodified	_GRGRRRNL_					0	0	0		ENST00000581067.1_1_18:5237784-5237997:-|nuORF	ENST00000581067.1_1_18:5237784-5237997:-|nuORF	ENST00000581067.1_1_18:5237784-5237997:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	492.80047607421875	2	492.79974	983.584928	-0.24793	-0.00012218	2.6351	0.0012986	2.3872	0.0011764	492.8009419082902	56.6	1.5858	53.796	53.175	54.761	-2.804					103	31	4	0	0	0	0.66704	1	4044	4044		50.025	4.0726	1	477380			14838	13992	12053	12069	16370	16370					0.09247860677021436
GRGSPQDL	8	Unmodified	_GRGSPQDL_					0	0	0		ENST00000470095.5_1_10:100185440-100193832:-|nuORF;ENST00000467246.5_1_10:100191016-100205113:-|nuORF	ENST00000470095.5_1_10:100185440-100193832:-|nuORF	ENST00000470095.5_1_10:100185440-100193832:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.2350158691406	2	415.211766	828.40898	-0.14843	-6.1632E-05	-2.4382	-0.0010124	-2.5867	-0.001074	415.2105262125097	43.561	0.38224	43.561	43.312	43.694	0					17	8	3	0	0	0	0.028476	1	2902	2902		31.955	0	1	154340			14839	12307	12054	12070	16371	16371					-0.012088183475839287
GRGVGIRKS	9	Unmodified	_GRGVGIRKS_					0	0	0		ENST00000530961.5_1_11:66372641-66373323:+|nuORF	ENST00000530961.5_1_11:66372641-66373323:+|nuORF	ENST00000530961.5_1_11:66372641-66373323:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	465.2856750488281	2	465.2856	928.556647	-1.6358	-0.00076114	1.3561	0.00063096	-0.27978	-0.00013018	465.28614320640764	142.28	1.4816	142.05	141.52	143	-0.22697					68	29	3	0	0	0	0.6653	1	14274	14274		24.203	2.2429	1	102120			14840	13298	12055	12071	16372	16372					0.08951117977085232
GRHPTRYPW	9	Unmodified	_GRHPTRYPW_					0	0	0		ENST00000446874.5_1_7:44068404-44068668:-|nuORF;ENST00000477184.5_1_7:102123509-102123833:-|nuORF	ENST00000446874.5_1_7:44068404-44068668:-|nuORF	ENST00000446874.5_1_7:44068404-44068668:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	585.2977905273438	2	585.301781	1168.58901	-5.1209	-0.0029973	-1.9737	-0.0011552	-7.0946	-0.0041525	585.3004174054372	158.93	1.4947	158.7	158.38	159.87	-0.22696					65	29	3	0	0	0	0.56889	1	16143	16143		35.618	1.4457	1	82878			14841	11998	12056	12072	16373	16373					0.011459053800535912
GRIIAKLYCP	10	Unmodified	_GRIIAKLYCP_					0	0	0			REV__ENST00000427137.1_1_7:46039864-46040332:-|nuORF	REV__ENST00000427137.1_1_7:46039864-46040332:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3297729492188	2	567.328619	1132.64269	-0.48412	-0.00027465	2.6482	0.0015024	2.1641	0.0012278	567.3299446868054	145.54	4.8872	144.11	142.68	147.57	-1.4357					247	95	4	0	0	0	0.72319	1	14289	14289		27.882	2.3082	1	208760	+		14842	25675	12057	12073	16374	16374					0.08166941767581193
GRIIHTPF	8	Unmodified	_GRIIHTPF_					0	0	0		ENSG00000144935|ENST00000476941|TRPC1;nc|ENSG00000144935|P48995-2|TRPC1;ENST00000480101.1_1_3:142499823-142503920:+|nuORF	ENSG00000144935|ENST00000476941|TRPC1	ENSG00000144935|ENST00000476941|TRPC1	MULTI-SECPEP	OvCa9_classI_Rep2	2	470.78778076171875	2	470.771794	939.529036	0.328	0.00015441	-4.0077	-0.0018867	-3.6797	-0.0017323	470.76984225416703	40.926	0.93531	38.216	37.897	38.832	-2.7097					31	18	3	0	0	0	0.028476	1	2079	2079		24.203	0	1	62958			14843	5194	12058	12074	16375	16375					0.05685214716845621
GRIITGKVF	9	Unmodified	_GRIITGKVF_					0	0	0		nc|ENSG00000010932|Q01740-2|FMO1;ENSG00000010932|ENST00000617670|FMO1;ENST00000472893.1_1_1:171249954-171252285:+|nuORF;ENST00000469112.5_2_1:171244541-171251486:+|nuORF	nc|ENSG00000010932|Q01740-2|FMO1	nc|ENSG00000010932|Q01740-2|FMO1	MULTI-MSMS	OvCa9_classI_Rep3	3	495.80572509765625	2	495.808377	989.6022	-3.0687	-0.0015215	-1.3757	-0.00068209	-4.4444	-0.0022036	495.80768519755566	143.85	1.3844	142.86	142.49	143.87	-0.9903					67	27	4	0	0	0	0.68424	1	11977	11977		21.96	0.25755	1	103180			14844	951	12059	12075	16376	16376					0.10698343439469227
GRILALLAF	9	Unmodified	_GRILALLAF_					0	0	0		ENST00000361951.4_1_1:173793819-173794101:+|nuORF	ENST00000361951.4_1_1:173793819-173794101:+|nuORF	ENST00000361951.4_1_1:173793819-173794101:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.2829895019531	2	487.313295	972.612037	0.11459	5.5843E-05	0.5589	0.00027236	0.67349	0.0003282	487.31336546128796	83.555	0.63298	80.892	80.632	81.265	-2.6629					15	12	2	0	0	0	0.027462	1	6995	6995		18.324	0	1	13808			14845	10810	12060	12076	16377	16377					0.12463531444836917
GRIRALFPAPL	11	Unmodified	_GRIRALFPAPL_					0	0	0		ENST00000534709.1_1_11:117152603-117155864:+|nuORF;nc|ENSG00000167257|Q8ND24-2|RNF214;ENSG00000167257|ENST00000300650|RNF214	ENST00000534709.1_1_11:117152603-117155864:+|nuORF	ENST00000534709.1_1_11:117152603-117155864:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	605.87060546875	2	605.874582	1209.73461	-4.4328	-0.0026857	0.14303	8.6658E-05	-4.2897	-0.002599	605.8745511795182	157.17	1.2501	156	155.65	156.91	-1.1707					83	31	4	0	0	0	0.70865	1	13523	13523		26.693	9.3279	1	204530			14846	6775	12061	12077	16378	16378					0.13813368176261065
GRKCRSFNH	9	Unmodified	_GRKCRSFNH_					0	0	0			REV__ENSG00000166527|ENST00000299665|CLEC4D	REV__ENSG00000166527|ENST00000299665|CLEC4D	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.32763671875	2	552.777616	1103.54068	0.31683	0.00017514	-4.2626	-0.0023562	-3.9457	-0.0021811	552.7751288966954	45.984	0.57127	45.984	45.754	46.326	0					21	12	3	0	0	0	0.027462	1	3198	3198		39.253	0	1	423330	+		14847	21203	12062	12078	16379	16379					-0.006949115314910159
GRKGKKVK	8	Unmodified	_GRKGKKVK_					0	0	0		ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000171316|ENST00000423902|CHD7;CHD7|p.S2860Kfs*9|1|0.3|ENSG00000171316|chr8:60865513-60865514|-/A|frameshift_variant;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9	ENSG00000100888|ENST00000646647|CHD8;ENSG00000171316|ENST00000423902|CHD7;nc|ENSG00000177200|Q3L8U1-2|CHD9	ENSG00000100888|ENST00000646647|CHD8	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.7847595214844	2	450.808711	899.602869	-0.13936	-6.2824E-05	-4.4462	-0.0020044	-4.5855	-0.0020672	450.80671903371575	42.561	0.37954	42.561	42.329	42.709	0					14	8	2	0	0	0	0.028476	1	2752	2752		19.36	5.5846	1	113460			14848	2115;231;7667	12063	12079	16380	16380					0.14905182879169843
GRKLANSLI	9	Unmodified	_GRKLANSLI_					0	0	0			REV__HNRNPM|p.L411Sfs*117|1|0.08|ENSG00000099783|chr19:8485658-8485658|C/-|frameshift_variant	REV__HNRNPM|p.L411Sfs*117|1|0.08|ENSG00000099783|chr19:8485658-8485658|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	486.3045654296875	2	486.303458	970.592364	0.60247	0.00029298	2.7724	0.0013482	3.3749	0.0016412	486.3047947264386	124.97	2.7662	124.74	124.37	127.13	-0.2359					156	55	5	0	0	0	0.42676	1	12246	12246		49.442	5.3247	1	3410600	+		14849	17332	12064	12080	16381	16381					0.10589155434081476
GRKLNIVQR	9	Unmodified	_GRKLNIVQR_					0	0	0			REV__ENST00000591360.1_1_18:56203896-56204202:+|nuORF	REV__ENST00000591360.1_1_18:56203896-56204202:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	543.3241577148438	2	542.340907	1082.66726	0.53104	0.00028801	1.5425	0.00083654	2.0735	0.0011245	542.3415659903487	72.049	0.63891	69.446	69.13	69.769	-2.6023					26	12	4	0	0	0	0.027462	1	3411	3411		27.882	10.414	1	36794	+		14850	27931	12065	12081	16382	16382					0.1292333796532148
GRKLNIVQR	9	Unmodified	_GRKLNIVQR_					0	0	0			REV__ENST00000591360.1_1_18:56203896-56204202:+|nuORF	REV__ENST00000591360.1_1_18:56203896-56204202:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.340907	1082.66726	-0.13199	-7.1583E-05	2.2592	0.0012253	2.1273	0.0011537	542.3419112731158	71.81	0.36358	69.303	69.121	69.485	-2.5071	-0.17411	9.7088E-05	NaN	27.882	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26084	+		14851	27931	12065	12081							0.1292333796532148
GRKPKLTRTQ	10	Unmodified	_GRKPKLTRTQ_					0	0	0		nc|ENSG00000274211|O14512-2|SOCS7;nc|ENSG00000274211|O14512|SOCS7;ENSG00000274211|ENST00000612932|SOCS7	nc|ENSG00000274211|O14512-2|SOCS7	nc|ENSG00000274211|O14512-2|SOCS7	MULTI-MSMS	OvCa9_classI_Rep4_	4	592.8652954101562	2	592.864746	1183.71494	-0.70831	-0.00041993	0.49289	0.00029221	-0.21542	-0.00012772	592.8649609004364	42.438	1.4554	39.458	39.264	40.72	-2.9804					72	27	4	0	0	0	0.58067	1	1972	1972		44.377	0.7264	1	291080			14852	9561	12066	12082	16383	16383					0.13042992165514988
GRKPKLTRTQ	10	Unmodified	_GRKPKLTRTQ_					0	0	0		nc|ENSG00000274211|O14512-2|SOCS7;nc|ENSG00000274211|O14512|SOCS7;ENSG00000274211|ENST00000612932|SOCS7	nc|ENSG00000274211|O14512-2|SOCS7	nc|ENSG00000274211|O14512-2|SOCS7	MULTI-MATCH	OvCa9_classI_Rep2	2		2	592.864746	1183.71494	0.46681	0.00027675	-0.48333	-0.00028655	-0.016526	-9.7975E-06	592.8643376626344	42.163	1.1845	39.453	39.177	40.361	-2.7097	-0.002359	-0.00084552	NaN	44.377	51	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88176			14853	9561	12066	12082							0.13042992165514988
GRKVLGLRQKP	11	Unmodified	_GRKVLGLRQKP_					0	0	0			REV__nc|nan|Q8N9H9-2|C1orf127	REV__nc|nan|Q8N9H9-2|C1orf127	MSMS	OvCa9_classI_Rep2	2	626.3923950195312	2	626.404038	1250.79352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	163.26	1	163.03	162.53	163.53	-0.22696								0	0	0	0.19474	1	16633	16633		19.997	0	1		+		14854	21884	12067	12083	16384	16384					0.17815844470578668
GRKVLKLLL	9	Unmodified	_GRKVLKLLL_					0	0	0		nc|ENSG00000110042|Q9Y2E6-2|DTX4;ENSG00000110042|ENST00000227451|DTX4	nc|ENSG00000110042|Q9Y2E6-2|DTX4	nc|ENSG00000110042|Q9Y2E6-2|DTX4	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.3466796875	2	520.371144	1038.72774	0.49937	0.00025986	-0.5286	-0.00027507	-0.029229	-1.521E-05	520.3705727689992	130.65	0.14815	129.52	129.41	129.56	-1.1249					4	2	2	0	0	0	0.027462	1	10372	10372		24.203	11.996	1	5611.8			14855	2748	12068	12084	16385	16385					0.20992055295710088
GRKVTSKRTI	10	Unmodified	_GRKVTSKRTI_					0	0	0			REV__ENST00000366197.9_1_19:57910793-57911177:+|nuORF	REV__ENST00000366197.9_1_19:57910793-57911177:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	574.3114013671875	2	573.359296	1144.70404	-1.419	-0.00081362	3.2146	0.0018431	1.7956	0.0010295	573.36120383996	45.455	0.73085	42.416	42.127	42.858	-3.0385					28	13	4	0	0	0	0.02717	1	2302	2302		17.468	2.6031	1	24126	+		14856	24875	12069	12085	16386	16386					0.13747589791228165
GRLAALPQGLR	11	Unmodified	_GRLAALPQGLR_					0	0	0		nc|ENSG00000127586|Q8WVB6-2|CHTF18	nc|ENSG00000127586|Q8WVB6-2|CHTF18	nc|ENSG00000127586|Q8WVB6-2|CHTF18	MULTI-MSMS	OvCa9_classI_Rep2	2	576.353759765625	2	576.354014	1150.69348	-0.29031	-0.00016732	-0.5669	-0.00032673	-0.85721	-0.00049406	576.3537371528553	71.759	4.075	69.252	68.91	72.985	-2.5071					188	77	5	0	0	0	0.48738	1	5773	5773		54.776	3.4409	1	5146300			14857	15004	12070	12086	16387	16387					0.1241560713679064
GRLACHYIIS	10	Unmodified	_GRLACHYIIS_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	MULTI-SECPEP	OvCa9_classI_Rep3	3	566.3108520507812	2	566.800226	1131.5859	0.26278	0.00014894	-3.0229	-0.0017134	-2.7601	-0.0015644	566.7987319428813	105.79	0.67783	104.44	104.3	104.98	-1.3482					14	12	2	0	0	0	0.026688	1	7459	7459		40.778	13.982	1	17933	+		14858	22916	12071	12087	16388	16388					0.02536894211038998
GRLARIEQGYC	11	Unmodified	_GRLARIEQGYC_					0	0	0			REV__nc|ENSG00000198324|Q8N4B1-2|PHETA1	REV__nc|ENSG00000198324|Q8N4B1-2|PHETA1	MULTI-MSMS	OvCa9_classI_Rep2	2	422.5499267578125	3	422.552156	1264.63464	-2.3233	-0.00098172	-3.6795	-0.0015548	-6.0028	-0.0025365	422.5505905657647	37.037	0.83755	34.328	34.09	34.928	-2.7097					33	16	3	0	0	0	0.70315	1	1639	1639		28.577	6.891	1	64628	+		14859	23009	12072	12088	16389	16389					0.01290762780172372
GRLARIEQGYC	11	Unmodified	_GRLARIEQGYC_					0	0	0			REV__nc|ENSG00000198324|Q8N4B1-2|PHETA1	REV__nc|ENSG00000198324|Q8N4B1-2|PHETA1	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		3	422.552156	1264.63464	-2.3233	-0.00098172	-3.6795	-0.0015548	-6.0028	-0.0025365	422.5505905657647	37.037	0.83755	34.328	34.09	34.928	-2.7097	0	0	NaN	28.577	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64628	+		14860	23009	12072	12088							0.01290762780172372
GRLELQLR	8	Unmodified	_GRLELQLR_					0	0	0		ENST00000610073.1_1_13:114523839-114538639:-|nuORF;nc|ENSG00000183087|Q14393-5|GAS6;nc|ENSG00000183087|Q14393-4|GAS6;ENST00000480426.5_1_13:114523839-114535869:-|nuORF;nc|ENSG00000183087|Q14393-3|GAS6;ENSG00000183087|ENST00000327773|GAS6;nc|ENSG00000183087|Q14393-1|GAS6	ENST00000610073.1_1_13:114523839-114538639:-|nuORF	ENST00000610073.1_1_13:114523839-114538639:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.802490234375	2	492.801083	983.587613	0.31013	0.00015283	-0.88334	-0.00043531	-0.57321	-0.00028248	492.8006535263743	57.337	1.4719	53.992	53.527	54.999	-3.3449					50	28	2	0	0	0	0.75723	1	3755	3755		23.042	1.0826	1	1133100			14861	14308	12073	12089	16390	16390					0.09516271291317935
GRLERRFLS	9	Unmodified	_GRLERRFLS_					0	0	0		ENST00000414083.6_2_6:33289124-33290733:-|nuORF;ENST00000374542.9_2_6:33289711-33290733:-|nuORF	ENST00000414083.6_2_6:33289124-33290733:-|nuORF	ENST00000414083.6_2_6:33289124-33290733:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.330078125	2	567.330539	1132.64652	-0.48412	-0.00027465	-0.73588	-0.00041748	-1.22	-0.00069214	567.3299446868054	145.54	4.8872	144.11	142.68	147.57	-1.4357					247	95	4	0	0	0	0.65371	1	14490	14490		25.574	3.8883	1	208760			14862	11573	12074	12090	16391	16391					0.0855074758567298
GRLGGGKMGL	10	Unmodified	_GRLGGGKMGL_					0	0	0		ENST00000595692.1_1_19:7679981-7682940:+|nuORF	ENST00000595692.1_1_19:7679981-7682940:+|nuORF	ENST00000595692.1_1_19:7679981-7682940:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.2688293457031	2	473.268561	944.52257	-0.39425	-0.00018659	0.26808	0.00012687	-0.12617	-5.9712E-05	473.2683739832455	44.191	0.85147	41.183	40.793	41.645	-3.0074					35	16	3	0	0	0	0.71192	1	2181	2181		29.15	0	1	366370			14863	14179	12075	12091	16392	16392					0.04808953493829904
GRLGLFLRHV	10	Unmodified	_GRLGLFLRHV_					0	0	0			REV__ENST00000369838.5_1_6:80341105-80383359:+|nuORF	REV__ENST00000369838.5_1_6:80341105-80383359:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	584.3560791015625	2	584.359099	1166.70365	-4.6254	-0.0027029	-0.004648	-2.7161E-06	-4.6301	-0.0027056	584.3589865391973	145.25	4.5766	144.28	142.9	147.48	-0.97299					233	91	4	0	0	0	0.79213	1	12117	12117		19.997	0	1	156220	+		14864	24950	12076	12092	16393	16393					0.12696214862012312
GRLGLRPE	8	Unmodified	_GRLGLRPE_					0	0	0		ENST00000586929.5_1_19:56904682-56904838:-|nuORF	ENST00000586929.5_1_19:56904682-56904838:-|nuORF	ENST00000586929.5_1_19:56904682-56904838:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	449.2691650390625	2	449.266876	896.519199	3.2258	0.0014492	1.1164	0.00050155	4.3422	0.0019508	449.26732371902864	112.43	2.5171	112.3	111.93	114.45	-0.12174					121	50	4	0	0	0	0.64026	1	10641	10641		55.504	0.73953	1	1472600			14865	14052	12077	12093	16394	16394					0.06680026711467235
GRLHFPKLR	9	Unmodified	_GRLHFPKLR_					0	0	0		nc|ENSG00000237864|Q6ZN03|LINC00322	nc|ENSG00000237864|Q6ZN03|LINC00322	nc|ENSG00000237864|Q6ZN03|LINC00322	MULTI-MSMS	OvCa9_classI_Rep2	2	562.3431396484375	2	562.345992	1122.67743	-1.142	-0.00064221	-3.8102	-0.0021426	-4.9522	-0.0027848	562.3438081477608	141.84	4.7959	141.62	140.24	145.03	-0.22697					133	96	2	0	0	0	0.62352	1	14397	14397		29.15	7.1897	1	113870			14866	15335	12078	12094	16395	16395					0.12099945690556524
GRLIIRAEELA	11	Unmodified	_GRLIIRAEELA_					0	0	0		ENST00000510450.1_1_3:125688183-125696014:+|nuORF;ENSG00000114547|ENST00000514116|ROPN1B;ENSG00000065371|ENST00000405845|ROPN1	ENST00000510450.1_1_3:125688183-125696014:+|nuORF	ENST00000510450.1_1_3:125688183-125696014:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.57073974609375	3	414.250583	1239.72992	0.090578	3.7522E-05	-1.3653	-0.00056556	-1.2747	-0.00052803	414.2501397337773	20.675	0.3382	19.337	19.209	19.548	-1.3386					12	6	2	0	0	0	0.026024	1	93	93		19.627	0	1	16055			14867	12972	12079	12095	16396	16396					0.1196443924286541
GRLKAKIQ	8	Unmodified	_GRLKAKIQ_					0	0	0			REV__nc|ENSG00000137601|Q96PY6-4|NEK1	REV__nc|ENSG00000137601|Q96PY6-4|NEK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.2858581542969	2	457.300719	912.586885	-0.13139	-6.0083E-05	1.3214	0.00060428	1.19	0.0005442	457.30120824781153	65.229	0.4824	61.744	61.552	62.034	-3.4854					11	9	2	0	0	0	0.028476	1	4685	4685		31.955	0	1	15114	+		14868	19464	12080	12096	16397	16397					0.12709476642260142
GRLLGEALA	9	Unmodified	_GRLLGEALA_					0	0	0		nc|ENSG00000186510|P51800-2|CLCNKA;nc|ENSG00000186510|P51800-3|CLCNKA;ENSG00000186510|ENST00000331433|CLCNKA	nc|ENSG00000186510|P51800-2|CLCNKA	nc|ENSG00000186510|P51800-2|CLCNKA	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.27008056640625	2	450.269084	898.523616	0.66588	0.00029983	-1.2562	-0.00056561	-0.59027	-0.00026578	450.2683337986321	61.743	3.9648	58.286	57.567	61.531	-3.4577					187	81	5	0	0	0	0.37135	1	4322	4322		54.776	1.4249	1	30469000			14869	8341	12081	12097	16398	16398					0.07029491134369437
GRLLHEMIL	9	Unmodified	_GRLLHEMIL_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	OvCa9_classI_Rep3	3	541.3145141601562	2	541.312969	1080.61138	-0.15857	-8.5836E-05	3.7061	0.0020061	3.5475	0.0019203	541.3147931507731	134.52	0.98869	133.39	133.06	134.05	-1.1226					41	18	3	0	0	0	0.50149	1	10853	10853		42.396	11.892	1	69775			14870	3919	12082	12098	16399	16399					0.07430368733503201
GRLLLHKLSL	10	Unmodified	_GRLLLHKLSL_					0	0	0			REV__ENST00000302513.6_1_2:99758144-99758336:+|nuORF	REV__ENST00000302513.6_1_2:99758144-99758336:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.3111572265625	2	575.376958	1148.73936	-1.1415	-0.00065678	-3.9164	-0.0022534	-5.0579	-0.0029102	575.3748825474166	99.569	0.30942	97.243	97.108	97.417	-2.3253					9	5	3	0	0	0	0.02661	1	8882	8882		58.782	7.4465	1	23865	+		14871	24260	12083	12099	16400	16400					0.17094252319043335
GRLLPLGRL	9	Unmodified	_GRLLPLGRL_					0	0	0			REV__ENST00000268296.8_1_16:31373430-31374502:+|nuORF	REV__ENST00000268296.8_1_16:31373430-31374502:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.2551574707031	2	497.829643	993.644734	-0.32854	-0.00016356	0.27635	0.00013758	-0.05219	-2.5982E-05	497.82968819572744	77.714	0.92118	74.897	74.584	75.506	-2.8165					43	18	3	0	0	0	0.027433	1	6224	6224		60.972	15.02	1	260300	+		14872	24055	12084	12100	16401	16401					0.14765738567712106
GRLLVAEAR	9	Unmodified	_GRLLVAEAR_					0	0	0			REV__ENSG00000062822|ENST00000440232|POLD1	REV__ENSG00000062822|ENST00000440232|POLD1	MULTI-MSMS	OvCa9_classI_Rep2	2	492.8007507324219	2	492.801083	983.587613	-0.24793	-0.00012218	-0.089465	-4.4088E-05	-0.33739	-0.00016627	492.8009419082902	56.6	1.5858	53.796	53.175	54.761	-2.804					103	31	4	0	0	0	0.51865	1	3995	3995		40.778	0	1	477380	+		14873	16755	12085	12101	16402	16402					0.09516271291306566
GRLMPWII	8	Unmodified	_GRLMPWII_					0	0	0		ENST00000483824.5_1_1:40420832-40434017:+|nuORF;MFSD2A|p.V402Gfs*27|1|0.12|ENSG00000168389|chr1:39967874-39967874|T/-|frameshift_variant;ENSG00000168389|ENST00000372811|MFSD2A;nc|ENSG00000168389|Q8NA29|MFSD2A	ENST00000483824.5_1_1:40420832-40434017:+|nuORF	ENST00000483824.5_1_1:40420832-40434017:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.7983703613281	2	493.286223	984.557893	1.0858	0.00053563	1.3013	0.00064193	2.3872	0.0011776	493.286628305496	35.577	0.69816	32.728	32.54	33.238	-2.849					21	13	3	0	0	0	0.028476	1	1191	1191		20.482	6.7065	1	60067			14874	6899	12086	12102	16403	16403					0.06499616021619659
GRLQRNLGPAL	11	Unmodified	_GRLQRNLGPAL_					0	0	0		ENSG00000172732|ENST00000308110|MUS81;ENST00000533519.1_1_11:65632648-65633520:+|nuORF	ENSG00000172732|ENST00000308110|MUS81	ENSG00000172732|ENST00000308110|MUS81	MULTI-MSMS	OvCa9_classI_Rep3	3	597.85595703125	2	597.856921	1193.69929	-1.9041	-0.0011384	0.86104	0.00051478	-1.0431	-0.00062361	597.8573316932594	144.83	3.9651	143.86	141.71	145.68	-0.97301					192	79	4	0	0	0	0.72466	1	12116	12116		19.997	0.6368	1	187110			14875	7315	12087	12103	16404	16404					0.11018705648461946
GRLRPNLTSRL	11	Unmodified	_GRLRPNLTSRL_					0	0	0			REV__MYO9B|p.P1393Qfs*60|1|0.26|ENSG00000099331|chr19:17198247-17198247|C/-|frameshift_variant	REV__MYO9B|p.P1393Qfs*60|1|0.26|ENSG00000099331|chr19:17198247-17198247|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8824462890625	2	641.888752	1281.76295	-5.3554	-0.0034376	-4.2627	-0.0027362	-9.6181	-0.0061737	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.65063	1	13144	13144		40.058	7.2458	1	804890	+		14876	28693	12088	12104	16405	16405					0.13334066085553786
GRLRQYRYPLH	11	Unmodified	_GRLRQYRYPLH_					0	0	0			REV__ENST00000540093.2_2_12:2921969-2922065:-|nuORF	REV__ENST00000540093.2_2_12:2921969-2922065:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	487.29034423828125	3	486.940743	1457.8004	-7.0472	-0.0034316	2.2128	0.0010775	-4.8344	-0.0023541	487.27642816315614	159.12	1.483	157.85	156.94	158.43	-1.267					51	31	2	0	0	0	0.026113	1	13697	13697		24.232	10.724	1	14216	+		14877	27345	12089	12105	16406	16406					0.08981157351172442
GRLRQYRYPLH	11	Unmodified	_GRLRQYRYPLH_					0	0	0			REV__ENST00000540093.2_2_12:2921969-2922065:-|nuORF	REV__ENST00000540093.2_2_12:2921969-2922065:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	486.940743	1457.8004	-6.0511	-0.0029465	1.2206	0.00059436	-4.8305	-0.0023522	487.2757487968427	159.58	1.9605	157.97	157.13	159.09	-1.6101	0.06108	-0.00058729	NaN	24.232	66	47	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17716	+		14878	27345	12089	12105							0.08981157351172442
GRLRVVKMIIS	11	Unmodified	_GRLRVVKMIIS_					0	0	0		nc|ENSG00000185046|Q7Z6G8|ANKS1B;ENSG00000185046|ENST00000683438|ANKS1B	nc|ENSG00000185046|Q7Z6G8|ANKS1B	nc|ENSG00000185046|Q7Z6G8|ANKS1B	MULTI-MSMS	OvCa9_classI_Rep4_	4	636.4002075195312	2	636.40265	1270.79075	-6.0266	-0.0038353	-0.62834	-0.00039987	-6.6549	-0.0042352	636.4021340969482	159.63	1.4705	158.02	157.73	159.2	-1.6101					96	32	4	0	0	0	0.72473	1	15841	15841		19.104	3.4617	1	297970			14879	8219	12090	12106	16407	16407					0.16618253021442797
GRLSKFVRIVP	11	Unmodified	_GRLSKFVRIVP_					0	0	0			REV__ENST00000491680.6_1_2:30670231-30775468:+|nuORF	REV__ENST00000491680.6_1_2:30670231-30775468:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	636.3991088867188	2	636.400964	1270.78738	-6.0266	-0.0038353	2.02	0.0012855	-4.0066	-0.0025498	636.4021340969482	159.63	1.4705	158.02	157.73	159.2	-1.6101					96	32	4	0	0	0	0.72466	1	15794	15794		19.997	0	1	297970	+		14880	26679	12091	12107	16408	16408					0.1628132623907277
GRLSPAPKKER	11	Unmodified	_GRLSPAPKKER_					0	0	0			REV__ENST00000262662.5_1_1:51434456-51434999:+|nuORF	REV__ENST00000262662.5_1_1:51434456-51434999:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8690795898438	2	619.870028	1237.7255	-2.7857	-0.0017268	1.79	0.0011095	-0.99576	-0.00061724	619.8709153162803	147.4	3.9416	146.45	144.36	148.3	-0.9512					241	78	4	0	0	0	0.70761	1	12345	12345		27.047	3.5246	1	225770	+		14881	23981	12092	12108	16409	16409					0.11614974819917734
GRLTALLGSTT	11	Unmodified	_GRLTALLGSTT_					0	0	0		ENST00000361171.7_1_9:129266081-129266318:+|nuORF	ENST00000361171.7_1_9:129266081-129266318:+|nuORF	ENST00000361171.7_1_9:129266081-129266318:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3160400390625	2	545.316763	1088.61897	-1.7047	-0.0009296	1.3026	0.00071033	-0.40209	-0.00021926	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.68757	1	14349	14349		33.922	2.2874	1	202430			14882	10785	12093	12109	16410	16410					0.07820799534783873
GRLTKDPEL	9	Unmodified	_GRLTKDPEL_					0	0	0		tr|A0A553SHN3|A0A553SHN3_NIACISingle-strandedDNA-bindingproteinOS=NialliacirculansOX=1397GN=ssbPE=3SV=1;tr|A0A7D6VVB8|A0A7D6VVB8_9CLOTSingle-strandedDNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23915PE=3SV=1	tr|A0A553SHN3|A0A553SHN3_NIACISingle-strandedDNA-bindingproteinOS=NialliacirculansOX=1397GN=ssbPE=3SV=1	tr|A0A553SHN3|A0A553SHN3_NIACISingle-strandedDNA-bindingproteinOS=NialliacirculansOX=1397GN=ssbPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	514.792724609375	2	514.790381	1027.56621	0.79788	0.00041074	2.2677	0.0011674	3.0656	0.0015781	514.7916392527665	118.94	2.1232	117.91	117.44	119.56	-1.0271					97	42	4	0	0	0	0.42576	1	9006	9006		49.536	0	1	128230			14883	33289	12094	12110	16411	16411					0.05352841471949432
GRLVFMQV	8	Oxidation (M)	_GRLVFM(Oxidation (M))QV_		GRLVFM(1)QV		GRLVFM(56)QV	0	0	1			REV__FANCA|p.E886Rfs*3|1|0.09|ENSG00000187741|chr16:89765012-89765012|C/-|frameshift_variant	REV__FANCA|p.E886Rfs*3|1|0.09|ENSG00000187741|chr16:89765012-89765012|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	483.264892578125	2	483.265487	964.516422	-0.33786	-0.00016328	-3.5009	-0.0016919	-3.8388	-0.0018552	483.26342832716375	54.028	1.4591	54.028	53.432	54.891	0					68	34	5	0	0	0	0.64026	1	4330	4330		55.504	7.5447	1	5227200	+		14884	22659	12095	12111	16412	16412		524			0.03274435262312636
GRLVLSSRP	9	Unmodified	_GRLVLSSRP_					0	0	0		ENST00000460879.5_1_1:145588608-145589406:-|nuORF;NUDT17|p.E146Afs*33|1|0.0|ENSG00000186364|chr1:145846621-145846622|-/CTTTGGGAGGCTGAGGTGGGCG|frameshift_variant;ENST00000477878.5_1_1:145588480-145589427:-|nuORF;ENSG00000186364|ENST00000334513|NUDT17	ENST00000460879.5_1_1:145588608-145589406:-|nuORF	ENST00000460879.5_1_1:145588608-145589406:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	492.80120849609375	2	492.801083	983.587613	-0.24793	-0.00012218	-0.089465	-4.4088E-05	-0.33739	-0.00016627	492.8009419082902	56.6	1.5858	53.796	53.175	54.761	-2.804					103	31	4	0	0	0	0.46356	2	4025	4013;4025		45.972	12.479	1	477380			14885	8332	12096	12112	16413;16414	16414					0.09516271291317935
GRLWCSVSL	9	Unmodified	_GRLWCSVSL_					0	0	0		ENST00000181839.8_1_7:39989715-39990237:+|nuORF	ENST00000181839.8_1_7:39989715-39990237:+|nuORF	ENST00000181839.8_1_7:39989715-39990237:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.7909240722656	2	510.768394	1019.52224	0.73422	0.00037501	1.6039	0.00081923	2.3381	0.0011942	510.7709126364749	141.46	0.19971	141.46	141.39	141.59	0					5	3	2	0	0	0	0.027462	1	16526	16526		14.865	0	1	16210			14886	9645	12097	12113	16415	16415					0.013255337739678907
GRLWLPTE	8	Unmodified	_GRLWLPTE_					0	0	0		ENST00000370557.5_1_X:139014747-139014987:-|nuORF	ENST00000370557.5_1_X:139014747-139014987:-|nuORF	ENST00000370557.5_1_X:139014747-139014987:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.8150329589844	2	486.269084	970.523616	0.17094	8.3121E-05	2.8249	0.0013737	2.9959	0.0014568	486.2705358581715	57.195	1.0697	53.85	53.375	54.444	-3.3449					40	20	3	0	0	0	0.028476	1	3764	3764		38.806	6.8513	1	109750			14887	10933	12098	12114	16416	16416					0.037174911343640815
GRNGRGVRDPA	11	Unmodified	_GRNGRGVRDPA_					0	0	0		ENST00000549243.5_1_12:48152797-48154151:+|nuORF	ENST00000549243.5_1_12:48152797-48154151:+|nuORF	ENST00000549243.5_1_12:48152797-48154151:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.3378295898438	2	577.810502	1153.60645	1.49	0.00086095	0.32863	0.00018989	1.8186	0.0010508	578.3146548511941	117.23	0.36993	117.23	117	117.37	0					12	7	2	0	0	0	0.025457	1	13411	13411		16.717	0	1	76252			14888	13569	12099	12115	16417	16417					0.03579200915100955
GRNGTWSLNL	10	Unmodified	_GRNGTWSLNL_					0	0	0			REV__ENSG00000112234|ENST00000369244|FBXL4	REV__ENSG00000112234|ENST00000369244|FBXL4	MULTI-MSMS	OvCa99_classI_Rep5	1	559.2940673828125	2	559.291079	1116.56761	1.4761	0.00082555	-2.5124	-0.0014051	-1.0363	-0.00057959	559.2895027146891	150.78	0.80963	150.78	150.59	151.4	0					24	15	3	0	0	0	0.48398	1	17651	17651		56.434	1.6575	1	111610	+		14889	18087	12100	12116	16418	16418					0.013984755606998078
GRNLVIEFIAR	11	Unmodified	_GRNLVIEFIAR_					0	0	0			REV__SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	REV__SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	429.26446533203125	3	429.922578	1286.7459	1.7036	0.00073243	-3.4055	-0.0014641	-1.7019	-0.00073168	429.9215396504017	67.289	0.93909	63.799	63.442	64.381	-3.4902					32	18	2	0	0	0	0.026033	1	4979	4979		12.433	0	1	21602	+		14890	19883	12101	12117	16419	16419					0.114001454797517
GRNRRLSF	8	Unmodified	_GRNRRLSF_					0	0	0		ENST00000484763.1_1_14:50582563-50582965:-|nuORF;nc|ENSG00000100483|Q9H867-1|VCPKMT	ENST00000484763.1_1_14:50582563-50582965:-|nuORF	ENST00000484763.1_1_14:50582563-50582965:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	503.76409912109375	2	503.288674	1004.5628	-1.8091	-0.00091048	-3.87	-0.0019477	-5.679	-0.0028582	503.2865530321306	92.888	1.1745	90.926	90.606	91.78	-1.9617					50	23	3	0	0	0	0.028476	1	5998	5998		19.36	0	1	246790			14891	12604	12102	12118	16420	16420					0.060696362085991495
GRNSQGRLPG	10	Unmodified	_GRNSQGRLPG_					0	0	0		ENST00000336798.11_2_1:31350222-31350498:-|nuORF	ENST00000336798.11_2_1:31350222-31350498:-|nuORF	ENST00000336798.11_2_1:31350222-31350498:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.8038330078125	2	521.281046	1040.54754	-1.0542	-0.00054954	-2.7076	-0.0014114	-3.7618	-0.0019609	521.281180294524	38.165	0.27938	38.165	38.069	38.348	0					7	5	2	0	0	0	0.026849	1	2141	2141		13.454	1.943	1	13389			14892	10515	12103	12119	16421	16421					0.028887246207432327
GRPAPPIGIL	10	Unmodified	_GRPAPPIGIL_					0	0	0			REV__ENST00000432228.1_1_2:222827655-222828180:+|nuORF	REV__ENST00000432228.1_1_2:222827655-222828180:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	495.80645751953125	2	495.808377	989.6022	-1.6284	-0.00080736	-2.787	-0.0013818	-4.4154	-0.0021892	495.8069614829561	143.45	1.4815	143.22	142.7	144.19	-0.22696					60	29	3	0	0	0	0.76627	1	14409	14409		23.042	6.5693	1	72131	+		14893	18133	12104	12120	16422	16422					0.10698343439469227
GRPARLVLWA	10	Unmodified	_GRPARLVLWA_					0	0	0			REV__nc|ENSG00000167536|Q6UX07-3|DHRS13	REV__nc|ENSG00000167536|Q6UX07-3|DHRS13	MULTI-MSMS	OvCa9_classI_Rep3	3	569.8456420898438	2	569.845825	1137.6771	0.70876	0.00040389	-0.79562	-0.00045338	-0.086856	-4.9495E-05	569.8452383624614	66.591	2.2644	63.645	63.265	65.53	-2.9459					89	44	4	0	0	0	0.78463	1	2772	2772		20.947	0.95016	1	226750	+		14894	21286	12105	12121	16423	16423					0.11376525970695184
GRPGHKPSI	9	Unmodified	_GRPGHKPSI_					0	0	0		ENSG00000163686|ENST00000478253|ABHD6	ENSG00000163686|ENST00000478253|ABHD6	ENSG00000163686|ENST00000478253|ABHD6	MULTI-MSMS	OvCa9_classI_Rep2	2	474.7726135253906	2	474.772326	947.530098	-2.2434	-0.0010651	2.3114	0.0010974	0.067932	3.2252E-05	474.77329814512956	37.51	1.38	34.8	34.287	35.667	-2.7097					69	27	4	0	0	0	0.3076	1	1678	1678		62.107	16.155	1	277560			14895	6346	12106	12122	16424	16424					0.05423429085760745
GRPIKSIEEF	10	Unmodified	_GRPIKSIEEF_					0	0	0			REV__tr|A0A7D6ZWD2|A0A7D6ZWD2_9CLOTAminoacyl-histidinedipeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18500PE=4SV=1	REV__tr|A0A7D6ZWD2|A0A7D6ZWD2_9CLOTAminoacyl-histidinedipeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18500PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.8601684570312	2	588.324588	1174.63462	1.9801	0.0011649	1.1448	0.00067353	3.1249	0.0018385	588.3252735771886	92.931	0.37551	92.931	92.677	93.053	0					10	8	2	0	0	0	0.026606	1	10045	10045		62.107	1.9892	1	154250	+		14896	32281	12107	12123	16425	16425					0.05429086051799459
GRPKGTFWD	9	Unmodified	_GRPKGTFWD_					0	0	0		chr3:13794811-13854532|146|16.91|0.05|8.44|-|2|None,WNT7A|1	chr3:13794811-13854532|146|16.91|0.05|8.44|-|2|None,WNT7A|1	chr3:13794811-13854532|146|16.91|0.05|8.44|-|2|None,WNT7A|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.7669067382812	2	532.269616	1062.52468	2.712	0.0014435	-2.6623	-0.0014171	0.049687	2.6447E-05	532.2679570984984	107.69	0.54369	107.69	107.27	107.82	0					17	12	3	0	0	0	0.027462	1	12151	12151		29.15	0	1	667340			14897	474	12108	12124	16426	16426					-0.004082944967194635
GRPKRGVGL	9	Unmodified	_GRPKRGVGL_					0	0	0		ENST00000251101.11_1_18:691232-697243:-|nuORF;nc|ENSG00000132199|Q7L5Y1-3|ENOSF1	ENST00000251101.11_1_18:691232-697243:-|nuORF	ENST00000251101.11_1_18:691232-697243:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.29583740234375	2	470.295968	938.577383	0.42479	0.00019978	-1.0382	-0.00048825	-0.61338	-0.00028847	470.29547904277877	21.564	1.9538	20.226	19.77	21.724	-1.3386					105	43	5	0	0	0	0.63422	1	192	192		27.882	5.9224	1	1545000			14898	9795	12109	12125	16427	16427					0.10563708356744428
GRPLAVSGIIL	11	Unmodified	_GRPLAVSGIIL_					0	0	0		nc|ENSG00000155034|Q96ME1-5|FBXL18;nc|ENSG00000155034|Q96ME1-1|FBXL18	nc|ENSG00000155034|Q96ME1-5|FBXL18	nc|ENSG00000155034|Q96ME1-5|FBXL18	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.3453369140625	2	548.347866	1094.68118	-2.9821	-0.0016352	-1.1105	-0.00060896	-4.0927	-0.0022442	548.3471290060427	150.24	1.502	148.8	148.37	149.88	-1.4344					77	33	4	0	0	0	0.71498	1	14845	14845		24.519	2.5593	1	132530			14899	15109	12110	12126	16428	16428					0.13762570673748087
GRPLAVSGIIL	11	Unmodified	_GRPLAVSGIIL_					0	0	0		nc|ENSG00000155034|Q96ME1-5|FBXL18;nc|ENSG00000155034|Q96ME1-1|FBXL18	nc|ENSG00000155034|Q96ME1-5|FBXL18	nc|ENSG00000155034|Q96ME1-5|FBXL18	MULTI-MATCH	OvCa9_classI_Rep3	3		2	548.347866	1094.68118	-4.8557	-0.0026626	0.87389	0.00047919	-3.9818	-0.0021834	548.3481416195077	149.82	1.3613	148.87	148.45	149.81	-0.9512	0.031526	0.0014438	NaN	24.519	48	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47221			14900	15109	12110	12126							0.13762570673748087
GRPLGRVGG	9	Unmodified	_GRPLGRVGG_					0	0	0			REV__ENST00000556433.5_1_14:69445007-69445439:-|nuORF	REV__ENST00000556433.5_1_14:69445007-69445439:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	434.75927734375	2	434.759218	867.503883	-1.3377	-0.00058158	1.4594	0.00063449	0.12169	5.2907E-05	434.7597358333452	139.11	1.8707	138.05	137.63	139.51	-1.0595					91	37	4	0	0	0	0.58665	1	11443	11443		33.516	0	1	610970	+		14901	27559	12111	12127	16429	16429					0.06483159914284897
GRPLPPPHPQ	10	Unmodified	_GRPLPPPHPQ_					0	0	0		LAMA5-C20orf151|1|fusion;ENSG00000130701|ENST00000252998|RBBP8NL	LAMA5-C20orf151|1|fusion	LAMA5-C20orf151|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	549.3046264648438	2	548.306532	1094.59851	-1.2529	-0.00068698	2.5343	0.0013895	1.2813	0.00070257	548.3068117569818	118.5	0.99461	118.35	117.84	118.83	-0.14755					30	19	2	0	0	0	0.027056	1	11339	11339		35.618	8.9254	1	22634			14902	14793	12112	12128	16430	16430					0.05499673665599403
GRPLSRQLM	9	Oxidation (M)	_GRPLSRQLM(Oxidation (M))_		GRPLSRQLM(1)		GRPLSRQLM(66)	0	0	1		nc|ENSG00000127980|O43933-2|PEX1;ENSG00000127980|ENST00000248633|PEX1;ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENST00000496420.5_1_7:92136298-92136457:-|nuORF	nc|ENSG00000127980|O43933-2|PEX1	nc|ENSG00000127980|O43933-2|PEX1	MULTI-MSMS	OvCa9_classI_Rep2	2	537.2969360351562	2	537.29785	1072.58115	-1.8238	-0.00097994	-2.4454	-0.0013139	-4.2692	-0.0022938	537.2965706710853	60.933	2.3725	58.163	57.501	59.873	-2.7702					136	45	4	0	0	0	0.27001	1	4468	4468		66.429	8.618	1	2338900			14903	3857	12113	12129	16431	16431		117			0.047760100682808115
GRPQKVVR	8	Unmodified	_GRPQKVVR_					0	0	0			REV__nc|ENSG00000128641|O43795-2|MYO1B	REV__nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	OvCa9_classI_Rep2	2	470.29559326171875	2	470.295968	938.577383	-0.49251	-0.00023162	-0.04838	-2.2753E-05	-0.54089	-0.00025438	470.29591238963496	32.315	1.7376	29.606	29.382	31.119	-2.7097					90	34	5	0	0	0	0.75241	1	1101	1101		25.45	1.2474	1	1326000	+		14904	18865	12114	12130	16432	16432					0.10563708356744428
GRPRERAAT	9	Unmodified	_GRPRERAAT_					0	0	0			REV__ENST00000229416.10_1_6:53409518-53409770:-|nuORF	REV__ENST00000229416.10_1_6:53409518-53409770:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.282470703125	2	507.283589	1012.55262	0.0066851	3.3913E-06	-0.10662	-5.4086E-05	-0.099933	-5.0694E-05	507.283412188162	31.081	1.5294	28.371	28.15	29.679	-2.7097					66	30	3	0	0	0	0.63422	1	959	959		27.882	0	1	500220	+		14905	23785	12115	12131	16433	16433					0.046850284833681144
GRPRLPQQQ	9	Unmodified	_GRPRLPQQQ_					0	0	0			REV__ENST00000277541.6_1_9:139407974-139409012:-|nuORF	REV__ENST00000277541.6_1_9:139407974-139409012:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	540.7691650390625	2	540.307064	1078.59957	0.30298	0.0001637	-0.32613	-0.00017621	-0.023146	-1.2506E-05	540.3068158104525	42.196	1.085	39.486	38.931	40.016	-2.7097					55	21	3	0	0	0	0.027462	1	2208	2208		21.96	11.094	1	82868	+		14906	24103	12116	12132	16434	16434					0.06341888034512522
GRPRPVFF	8	Unmodified	_GRPRPVFF_					0	0	0		ENST00000262370.11_1_16:4740157-4740412:+|nuORF	ENST00000262370.11_1_16:4740157-4740412:+|nuORF	ENST00000262370.11_1_16:4740157-4740412:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.2829895019531	2	488.279786	974.54502	0.60801	0.00029688	-0.5095	-0.00024878	0.098504	4.8097E-05	488.27891332235	84.057	0.51474	81.394	81.215	81.73	-2.6629					17	10	2	0	0	0	0.028476	1	6995	6995		14.664	0	1	23185			14907	9891	12117	12133	16435	16435					0.05672920953747962
GRPRRGALIS	10	Unmodified	_GRPRRGALIS_					0	0	0		ENST00000547085.1_1_12:112600816-112607652:-|nuORF	ENST00000547085.1_1_12:112600816-112607652:-|nuORF	ENST00000547085.1_1_12:112600816-112607652:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.78125	2	541.830706	1081.64686	1.4077	0.00076273	1.0047	0.00054436	2.4124	0.0013071	541.8317442389582	101.34	0.20474	101.34	101.19	101.4	0					7	4	2	0	0	0	0.026688	1	11266	11266		32.812	0	1	126130			14908	13544	12118	12134	16436	16436					0.1093016730551426
GRPSGSASHP	10	Unmodified	_GRPSGSASHP_					0	0	0		ENST00000589796.2_1_17:43246178-43246817:-|nuORF	ENST00000589796.2_1_17:43246178-43246817:-|nuORF	ENST00000589796.2_1_17:43246178-43246817:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.2619323730469	2	476.733397	951.452242	-0.21611	-0.00010303	3.2527	0.0015507	3.0366	0.0014477	476.7352264025795	46.343	2.0608	43.271	42.457	44.517	-3.0724					96	39	5	0	0	0	0.027118	1	2535	2535		19.104	4.2386	1	124540			14909	14095	12119	12135	16437	16437					-0.025426285703019857
GRPSGSASHP	10	Unmodified	_GRPSGSASHP_					0	0	0		ENST00000589796.2_1_17:43246178-43246817:-|nuORF	ENST00000589796.2_1_17:43246178-43246817:-|nuORF	ENST00000589796.2_1_17:43246178-43246817:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	476.733397	951.452242	-0.48876	-0.00023301	4.5302	0.0021597	4.0414	0.0019267	476.7353573327489	46.1	1.6438	43.39	42.747	44.39	-2.7097	0.059716	0.00053174	NaN	19.104	55	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32059			14910	14095	12119	12135							-0.025426285703019857
GRPVGSFV	8	Unmodified	_GRPVGSFV_					0	0	0			REV__ENSG00000278195|ENST00000610913|SSTR3	REV__ENSG00000278195|ENST00000610913|SSTR3	MULTI-MSMS	OvCa99_classI_Rep5	1	409.7311096191406	2	409.729595	817.444637	3.1655	0.001297	-0.64396	-0.00026385	2.5216	0.0010332	409.7291877449085	82.8	0.64013	82.8	82.609	83.249	0					29	14	3	0	0	0	0.74229	1	8592	8592		30.504	1.3541	1	980040	+		14911	23639	12120	12136	16438	16438					0.028612639000812123
GRPVINVLL	9	Unmodified	_GRPVINVLL_					0	0	0		ENST00000400385.2_1_21:45231887-45232085:-|nuORF	ENST00000400385.2_1_21:45231887-45232085:-|nuORF	ENST00000400385.2_1_21:45231887-45232085:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.7756042480469	2	490.816202	979.617851	-0.30726	-0.00015081	-0.053775	-2.6394E-05	-0.36103	-0.0001772	490.81613341762295	91.745	0.65528	89.202	88.912	89.567	-2.5425					23	12	2	0	0	0	0.027417	1	7963	7963		55.504	13.108	1	47049			14912	11407	12121	12137	16439	16439					0.127226299565109
GRPVKSILN	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))GRPVKSILN_					1	0	0			REV__nc|ENSG00000132000|Q6PEZ8-2|PODNL1	REV__nc|ENSG00000132000|Q6PEZ8-2|PODNL1	MULTI-MSMS	OvCa99_classI_Rep5	1	513.312255859375	2	513.308741	1024.60293	-0.21894	-0.00011238	4.1645	0.0021377	3.9456	0.0020253	513.3107760483713	104.95	0.8735	104.95	104.7	105.57	0					54	19	4	0	0	0	0.16562	1	11808	11808		82.241	10.363	1	7945300	+		14913	19046	12122	12138	16440	16440					0.09161138088529697
GRPVLRTT	8	Unmodified	_GRPVLRTT_					0	0	0		nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;ENSG00000160111|ENST00000443236|CPAMD8	nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	MULTI-MSMS	OvCa9_classI_Rep2	2	450.2744140625	2	450.274701	898.534849	-0.13529	-6.0919E-05	0.090648	4.0817E-05	-0.044646	-2.0103E-05	450.27464677011136	147.54	1.7967	147.31	146.82	148.62	-0.22696					100	35	5	0	0	0	0.75426	1	14958	14958		18.324	2.6882	1	344090			14914	6038	12123	12139	16441	16441					0.08152313228504227
GRPWIWMK	8	Unmodified	_GRPWIWMK_					0	0	0			REV__ENST00000557802.5_1_14:24584825-24587275:+|nuORF	REV__ENST00000557802.5_1_14:24584825-24587275:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.8051147460938	2	537.289297	1072.56404	-1.3108	-0.0007043	2.7715	0.0014891	1.4606	0.00078479	537.2904392750024	64.291	0.63004	61.566	61.181	61.811	-2.7245					17	11	2	0	0	0	0.028476	1	4920	4920		52.299	31.352	1	16059	+		14915	27578	12124	12140	16442	16442					0.030661342531402624
GRQALRTL	8	Unmodified	_GRQALRTL_					0	0	0			REV__ENST00000302351.8_1_5:73936651-73937086:-|nuORF	REV__ENST00000302351.8_1_5:73936651-73937086:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	457.7796936035156	2	457.780151	913.545748	-0.57777	-0.00026449	3.1362	0.0014357	2.5584	0.0011712	457.7801444808238	51.29	1.765	48.117	47.721	49.486	-3.1734					87	34	4	0	0	0	0.6345	1	2998	2998		56.721	10.769	1	312550	+		14916	24257	12125	12141	16443	16443					0.08551715602800414
GRQALRTL	8	Unmodified	_GRQALRTL_					0	0	0			REV__ENST00000302351.8_1_5:73936651-73937086:-|nuORF	REV__ENST00000302351.8_1_5:73936651-73937086:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	457.780151	913.545748	-0.48886	-0.00022379	3.6744	0.0016821	3.1855	0.0014583	457.78026902477245	51.011	1.9337	48.217	47.381	49.314	-2.794	0.050418	0.00024425	NaN	56.721	80	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106580	+		14917	24257	12125	12141							0.08551715602800414
GRQAVPLAALR	11	Unmodified	_GRQAVPLAALR_					0	0	0			REV__ENST00000348354.6_1_21:18981451-18985174:-|nuORF	REV__ENST00000348354.6_1_21:18981451-18985174:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	576.3535766601562	2	576.354014	1150.69348	-0.5103	-0.00029411	-0.49695	-0.00028642	-1.0073	-0.00058053	576.3538085628105	72.001	4.4609	69.399	69.081	73.542	-2.6023					248	89	5	0	0	0	0.50928	1	3419	3419		52.937	3.4007	1	7516400	+		14918	24707	12126	12142	16444	16444					0.1241560713679064
GRQFGALTLP	10	Unmodified	_GRQFGALTLP_					0	0	0			REV__ENST00000561991.5_1_16:2153598-2156273:-|nuORF	REV__ENST00000561991.5_1_16:2153598-2156273:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	531.2763671875	2	530.300916	1058.58728	-1.0517	-0.0005577	0.54586	0.00028947	-0.50582	-0.00026823	530.8032671789515	86.22	0.95324	83.999	83.636	84.589	-2.2204					39	18	3	0	0	0	0.02658	1	5078	5078		64.207	7.4862	1	153860	+		14919	27642	12127	12143	16445	16445					0.0603285157146729
GRQLEAVLL	9	Unmodified	_GRQLEAVLL_					0	0	0			REV__nc|ENSG00000008710|P98161-2|PKD1	REV__nc|ENSG00000008710|P98161-2|PKD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.2575378417969	2	499.803291	997.59203	1.5368	0.00076812	1.2254	0.00061248	2.7623	0.0013806	499.8035618250622	92.38	1.2604	92.38	91.502	92.762	0					58	29	4	0	0	0	0.027459	1	10004	10004		44.377	0	1	1512000	+		14920	16459	12128	12144	16446	16446					0.09313735714226823
GRQRLSAR	8	Unmodified	_GRQRLSAR_					0	0	0		ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.7629699707031	2	472.280849	942.547145	0.76606	0.0003618	1.911	0.00090254	2.6771	0.0012643	472.2816623105381	64.035	0.58665	60.56	60.393	60.98	-3.475					24	11	3	0	0	0	0.028476	1	4552	4552		37.159	16.212	1	131920			14921	6013	12129	12145	16447	16447					0.07357349691551462
GRQRLSAR	8	Unmodified	_GRQRLSAR_					0	0	0		ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	MULTI-MATCH	OvCa9_classI_Rep2	2		2	472.280849	942.547145	-1.68	-0.00079342	4.6831	0.0022117	3.0031	0.0014183	472.2829257766202	63.228	0.5226	60.484	60.32	60.842	-2.7444	-0.038107	0.0017209	NaN	15.642	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15277			14922	6013	12129	12145							0.07357349691551462
GRQSPLCPK	9	Unmodified	_GRQSPLCPK_					0	0	0		ZNF2|p.H191Ifs*30|1|0.08|ENSG00000275111|chr2:95181398-95181398|C/-|frameshift_variant;nc|ENSG00000275111|Q9BSG1-3|ZNF2;ENSG00000275111|ENST00000614034|ZNF2;nc|ENSG00000275111|Q9BSG1-4|ZNF2	ZNF2|p.H191Ifs*30|1|0.08|ENSG00000275111|chr2:95181398-95181398|C/-|frameshift_variant	ZNF2|p.H191Ifs*30|1|0.08|ENSG00000275111|chr2:95181398-95181398|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.8028869628906	2	493.266019	984.517485	0.38005	0.00018746	-3.6937	-0.001822	-3.3137	-0.0016345	493.2640923541641	57.006	0.55938	53.661	53.375	53.934	-3.3449					14	10	2	0	0	0	0.027433	1	3703	3703		51.335	1.8939	1	18377			14923	9568	12130	12146	16448	16448					0.0246064963120034
GRQSYVPPL	9	Unmodified	_GRQSYVPPL_					0	0	0			REV__ENSG00000151379|ENST00000281047|MSGN1	REV__ENSG00000151379|ENST00000281047|MSGN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.7496032714844	2	508.779816	1015.54508	-1.0971	-0.0005582	4.461	0.0022697	3.3639	0.0017115	508.7815634489462	43.643	0.51718	43.643	43.435	43.952	0					26	11	3	0	0	0	0.02741	1	2886	2886		42.396	0	1	249400	+		14924	20229	12131	12147	16449	16449					0.03792876163083747
GRQTVIDEISG	11	Unmodified	_GRQTVIDEISG_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-SECPEP	OvCa9_classI_Rep2	2	588.34765625	2	587.806759	1173.59897	-1.8909	-0.0011115	1.4746	0.00086678	-0.41634	-0.00024473	587.8075600588043	34.442	0.5952	31.733	31.612	32.208	-2.7097					24	11	3	0	0	0	0.026206	1	1302	1302		23.523	0.94304	1	44173	+		14925	18823	12132	12148	16450	16450					0.019110038041162625
GRQTVIDEISG	11	Unmodified	_GRQTVIDEISG_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	587.806759	1173.59897	-0.032831	-1.9298E-05	-0.43189	-0.00025387	-0.46472	-0.00027317	587.8063673182662	31.796	0.19888	31.796	31.658	31.857	0	0.03162	-0.0021511	NaN	23.523	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47098	+		14926	18823	12132	12148							0.019110038041162625
GRQYYTLKN	9	Unmodified	_GRQYYTLKN_					0	0	0		tr|A0A7D6VND9|A0A7D6VND9_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14965PE=4SV=1	tr|A0A7D6VND9|A0A7D6VND9_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14965PE=4SV=1	tr|A0A7D6VND9|A0A7D6VND9_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14965PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	570.8237915039062	2	571.80128	1141.58801	1.1126	0.00063617	-2.0877	-0.0011938	-0.97518	-0.00055761	571.8008545709913	84.995	0.4907	82.348	82.12	82.61	-2.6463					18	9	3	0	0	0	0.027448	1	7118	7118		35.618	5.3006	1	20908			14927	34696	12133	12149	16451	16451					0.022876462204976633
GRRAAKLG	8	Unmodified	_GRRAAKLG_					0	0	0		SDK1|p.G1830Rfs*24|1|0.09|ENSG00000146555|chr7:4210109-4210110|-/CAGACAATGGACTC|frameshift_variant;nc|ENSG00000146555|Q7Z5N4-3|SDK1;ENSG00000146555|ENST00000404826|SDK1;SDK1|p.Y739Ifs*8|1|0.12|ENSG00000146555|chr7:4011049-4011049|T/-|frameshift_variant;SDK1|p.V776Gfs*52|1|0.09|ENSG00000146555|chr7:4012142-4012142|T/-|frameshift_variant;SDK1|p.L1190Afs*107|1|0.14|ENSG00000146555|chr7:4113417-4113418|-/AT|frameshift_variant	SDK1|p.G1830Rfs*24|1|0.09|ENSG00000146555|chr7:4210109-4210110|-/CAGACAATGGACTC|frameshift_variant	SDK1|p.G1830Rfs*24|1|0.09|ENSG00000146555|chr7:4210109-4210110|-/CAGACAATGGACTC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	414.7618713378906	2	414.761761	827.508969	-1.3763	-0.00057084	1.469	0.0006093	0.092716	3.8455E-05	414.7623056204016	140.83	3.4972	139.8	137.66	141.16	-1.0339					138	70	4	0	0	0	0.74971	1	11627	11627		26.796	0	1	1080700			14928	5298	12134	12150	16452	16452					0.08831463776891724
GRRACNQSK	9	Unmodified	_GRRACNQSK_					0	0	0			REV__nc|ENSG00000105520|Q96GM1-2|PLPPR2	REV__nc|ENSG00000105520|Q96GM1-2|PLPPR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.2646179199219	2	510.261799	1018.50905	-0.43046	-0.00021965	-2.7898	-0.0014235	-3.2202	-0.0016432	510.260167464052	38.509	0.40417	38.509	38.301	38.705	0					12	8	2	0	0	0	0.027462	1	2176	2176		30.504	10.507	1	74725	+		14929	17733	12135	12151	16453	16453					0.0005309571457701168
GRRAGVVP	8	Unmodified	_GRRAGVVP_					0	0	0			REV__nc|ENSG00000085644|O14771-2|ZNF213	REV__nc|ENSG00000085644|O14771-2|ZNF213	MULTI-MSMS	OvCa9_classI_Rep4_	4	406.2490234375	2	406.248486	810.48242	1.9995	0.00081228	-1.9505	-0.00079239	0.048949	1.9885E-05	406.2475600842221	141.22	1.3094	139.76	139.45	140.76	-1.4627					69	24	4	0	0	0	0.73417	1	13777	13777		9.4706	1.2393	1	437180	+		14930	17137	12136	12152	16454	16454					0.06959774885558545
GRRCFIYKE	9	Unmodified	_GRRCFIYKE_					0	0	0			REV__tr|A0A553SF83|A0A553SF83_NIACILacIfamilyDNA-bindingtranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08395PE=4SV=1	REV__tr|A0A553SF83|A0A553SF83_NIACILacIfamilyDNA-bindingtranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08395PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	585.8682250976562	2	586.305675	1170.5968	-1.3702	-0.00080337	-2.5507	-0.0014955	-3.9209	-0.0022988	586.3040489940354	53.553	0.79547	50.739	50.379	51.175	-2.8139					39	15	3	0	0	0	0.027462	1	3649	3649		23.042	6.5693	1	64108	+		14931	29545	12137	12153	16455	16455					0.01832296585325821
GRRDPQDFPAL	11	Unmodified	_GRRDPQDFPAL_					0	0	0		ENST00000560945.1_1_15:64444062-64444236:+|nuORF	ENST00000560945.1_1_15:64444062-64444236:+|nuORF	ENST00000560945.1_1_15:64444062-64444236:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	636.3287963867188	2	636.328193	1270.64183	-0.38295	-0.00024368	0.37669	0.0002397	-0.0062585	-3.9825E-06	636.3283806206185	88.113	1.1978	85.982	85.648	86.846	-2.1309					67	23	5	0	0	0	0.67529	1	5348	5348		37.812	1.3648	1	538280			14932	13745	12138	12154	16456	16456					0.017338186522238175
GRREEDATI	9	Unmodified	_GRREEDATI_					0	0	0			REV__sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2	REV__sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.29052734375	2	523.764894	1045.51524	1.6164	0.00084662	-0.88352	-0.00046275	0.73289	0.00038386	524.2664293632381	92.699	0.16588	92.699	92.555	92.721	0					5	3	2	0	0	0	0.027462	1	10024	10024		21.96	9.0007	1	116140	+		14933	29393	12139	12155	16457	16457					-0.00570107572912093
GRREERRGRPR	11	Unmodified	_GRREERRGRPR_					0	0	0			REV__ENST00000298966.2_11:93232511-93276567:-|nuORF	REV__ENST00000298966.2_11:93232511-93276567:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	475.6080017089844	3	475.606646	1423.79811	0.21695	0.00010318	2.9003	0.0013794	3.1173	0.0014826	475.6080820872315	80.588	3.0505	78.893	78.222	81.273	-1.6951					178	59	5	0	0	0	0.69015	1	6844	6844		33.039	0.28887	1	4080000	+		14934	24218	12140	12156	16458	16458					0.10316121666051004
GRREFSESE	9	Unmodified	_GRREFSESE_					0	0	0		ENST00000360689.9_1_14:65878672-65922398:+|nuORF;ENST00000394586.6_1_14:65878636-66028150:+|nuORF	ENST00000360689.9_1_14:65878672-65922398:+|nuORF	ENST00000360689.9_1_14:65878672-65922398:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.777099609375	2	548.754527	1095.4945	-0.64715	-0.00035513	-3.6274	-0.0019905	-4.2745	-0.0023457	548.7524676544696	29.216	0.4486	29.216	29.087	29.536	0					20	8	4	0	0	0	0.027462	1	1030	1030		30.504	2.6214	1	148020			14935	10780	12141	12157	16459	16459					-0.0494269795258333
GRRERSRERRH	11	Unmodified	_GRRERSRERRH_					0	0	0			REV__ENST00000474361.6_1_X:1719073-1720484:+|nuORF	REV__ENST00000474361.6_1_X:1719073-1720484:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	498.9449462890625	3	498.94555	1493.81482	-0.78365	-0.000391	-3.6246	-0.0018085	-4.4083	-0.0021995	498.94375426248735	81.253	6.1948	78.93	78.543	84.738	-2.3226					323	125	6	0	0	0	0.70848	1	4487	4487		26.75	2.4738	1	6828400	+		14936	22974	12142	12158	16460	16460					0.08766622552002445
GRRETLALL	9	Unmodified	_GRRETLALL_					0	0	0		COL16A1|p.Q400Rfs*61|1|0.11|ENSG00000084636|chr1:31692063-31692063|T/-|frameshift_variant	COL16A1|p.Q400Rfs*61|1|0.11|ENSG00000084636|chr1:31692063-31692063|T/-|frameshift_variant	COL16A1|p.Q400Rfs*61|1|0.11|ENSG00000084636|chr1:31692063-31692063|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.8158569335938	2	514.81419	1027.61383	-0.32798	-0.00016885	4.0999	0.0021107	3.7719	0.0019418	514.8161006739908	128.1	1.7242	126.66	126.04	127.76	-1.4357					85	33	4	0	0	0	0.34132	1	12277	12277		58.23	0.41864	1	358610			14937	593	12143	12159	16461	16461					0.1011254046279646
GRRGALGRRQR	11	Unmodified	_GRRGALGRRQR_					0	0	0			REV__ENST00000283921.4_1_7:27211779-27213458:-|nuORF	REV__ENST00000283921.4_1_7:27211779-27213458:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8818359375	2	641.88741	1281.76027	-4.6434	-0.0029805	-2.8726	-0.0018439	-7.516	-0.0048244	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.71498	1	15591	15591		24.519	0.99649	1	543390	+		14938	24124	12144	12160	16462	16462					0.13065655471245918
GRRGMLTRRS	10	Unmodified	_GRRGMLTRRS_					0	0	0		nc|ENSG00000204130|Q8WXA3-3|RUFY2	nc|ENSG00000204130|Q8WXA3-3|RUFY2	nc|ENSG00000204130|Q8WXA3-3|RUFY2	MULTI-MSMS	OvCa99_classI_Rep5	1	595.3381958007812	2	595.338372	1188.66219	1.0211	0.00060792	-1.3357	-0.00079519	-0.31456	-0.00018727	595.3374743874397	153.38	1.4722	153.38	152.95	154.42	0					90	29	5	0	0	0	0.5675	1	17964	17964		45.972	4.5456	1	976430			14939	15265	12145	12161	16463	16463					0.07540710831040087
GRRIEARPVP	10	Unmodified	_GRRIEARPVP_					0	0	0			REV__sp|Q6SWD5|IR01_HCMVMProteinRL1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL1PE=1SV=1	REV__sp|Q6SWD5|IR01_HCMVMProteinRL1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL1PE=1SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8423461914062	2	575.843813	1149.67307	-3.1773	-0.0018296	2.254	0.0012979	-0.92334	-0.0005317	575.8447773729116	141.87	3.8997	140.86	138.96	142.86	-1.0106					243	78	6	0	0	0	0.6104	1	11750	11750		40.778	1.5253	1	129610	+		14940	29419	12146	12162	16464	16464					0.10422436476960684
GRRILLPPR	9	Unmodified	_GRRILLPPR_					0	0	0			REV__nc|ENSG00000133083|O15075-3|DCLK1	REV__nc|ENSG00000133083|O15075-3|DCLK1	MULTI-MSMS	OvCa9_classI_Rep3	3	539.353271484375	2	539.353817	1076.69308	2.2939	0.0012372	-2.3996	-0.0012943	-0.10574	-5.7029E-05	539.3523735364151	63.128	1.3441	60.094	59.756	61.1	-3.0339					58	26	3	0	0	0	0.7044	1	2327	2327		16.473	4.9621	1	102560	+		14941	28856	12147	12163	16465	16465					0.15780232207589506
GRRLKNLFF	9	Unmodified	_GRRLKNLFF_					0	0	0			REV__ENST00000431388.2_1_17:79214956-79214986:+|nuORF	REV__ENST00000431388.2_1_17:79214956-79214986:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8436889648438	2	575.845825	1149.6771	-2.8608	-0.0016474	-1.7485	-0.0010069	-4.6093	-0.0026543	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.64339	1	14715	14715		26.796	1.222	1	356230	+		14942	25720	12148	12164	16466	16466					0.1082452597070187
GRRPLMDPH	9	Unmodified	_GRRPLMDPH_					0	0	0		ENST00000284503.6_1_8:11637143-11637398:+|nuORF	ENST00000284503.6_1_8:11637143-11637398:+|nuORF	ENST00000284503.6_1_8:11637143-11637398:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	540.2985229492188	2	539.782367	1077.55018	-2.5519	-0.0013774	2.2591	0.0012194	-0.29278	-0.00015804	539.7835254968317	37.805	0.98564	35.095	34.781	35.766	-2.7097					40	19	3	0	0	0	0.027462	1	1798	1798		34.173	0	1	46070			14943	10070	12149	12165	16467	16467					0.014508567540588047
GRRPRKPLP	9	Unmodified	_GRRPRKPLP_					0	0	0			REV__nc|ENSG00000164362|O14746-3|TERT	REV__nc|ENSG00000164362|O14746-3|TERT	MULTI-SECPEP	OvCa9_classI_Rep2	2	538.8627319335938	2	538.843616	1075.67268	-0.20499	-0.00011045	-2.962	-0.0015961	-3.167	-0.0017065	538.8427790616355	131.92	0.9281	131.7	131.45	132.38	-0.22697					42	18	3	0	0	0	0.027462	1	13089	13089		33.516	0	1	62551	+		14944	20982	12150	12166	16468	16468					0.13787061547782287
GRRRALQLLA	10	Unmodified	_GRRRALQLLA_					0	0	0		ENSG00000181619|ENST00000395116|GPR135	ENSG00000181619|ENST00000395116|GPR135	ENSG00000181619|ENST00000395116|GPR135	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.3538818359375	2	577.367456	1152.72036	1.2743	0.00073575	4.2992	0.0024822	5.5736	0.003218	577.3706316264414	79.433	0.19842	79.433	79.276	79.474	0					5	4	2	0	0	0	0.027228	1	8080	8080		23.042	6.5693	1	280410			14945	7939	12151	12167	16469	16469					0.1501071574798516
GRRRASQLLRR	11	Unmodified	_GRRRASQLLRR_					0	0	0			REV__ENST00000366756.3_1_6:170597857-170599216:-|nuORF	REV__ENST00000366756.3_1_6:170597857-170599216:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	456.9518127441406	3	456.951754	1367.83343	-0.065064	-2.9731E-05	0.29279	0.00013379	0.22773	0.00010406	456.9516721405593	22.966	0.42426	22.966	22.821	23.246	0					13	8	3	0	0	0	0.72507	1	279	279		14.694	0	1	58107	+		14946	24884	12152	12168	16470	16470					0.16422784193855477
GRRRKLVS	8	Unmodified	_GRRRKLVS_					0	0	0			REV__RBP1|p.E101Sfs*24|1|0.1|ENSG00000114115|chr3:139518474-139518475|-/TTTAGAACAGA|frameshift_variant	REV__RBP1|p.E101Sfs*24|1|0.1|ENSG00000114115|chr3:139518474-139518475|-/TTTAGAACAGA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.2914733886719	2	486.314692	970.614831	-0.33227	-0.00016159	-1.9706	-0.00095836	-2.3029	-0.0011199	486.31373459965135	46.754	0.155	43.681	43.604	43.759	-3.0724					4	2	2	0	0	0	0.028476	1	2473	2473		12.959	0	1	5768.8	+		14947	29332	12153	12169	16471	16471					0.12834799622362425
GRRRKLYSA	9	Unmodified	_GRRRKLYSA_					0	0	0		nc|ENSG00000161681|Q9Y566-3|SHANK1;ENSG00000161681|ENST00000293441|SHANK1;SHANK1|p.P555L|1|0.29|ENSG00000161681|chr19:50702550-50702550|G/A|missense_variant	nc|ENSG00000161681|Q9Y566-3|SHANK1	nc|ENSG00000161681|Q9Y566-3|SHANK1	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8302612304688	2	553.830706	1105.64686	-0.8401	-0.00046527	-0.49633	-0.00027488	-1.3364	-0.00074015	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.67509	2	14192	14192;14216		23.042	2.0956	1	245610			14948	6136	12154	12170	16472;16473	16472					0.09826167305504896
GRRRKSRKL	9	Unmodified	_GRRRKSRKL_					0	0	0		ENST00000275036.11_1_6:79911404-79912078:-|nuORF	ENST00000275036.11_1_6:79911404-79912078:-|nuORF	ENST00000275036.11_1_6:79911404-79912078:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.8150024414062	2	578.878522	1155.74249	-1.2414	-0.00071861	3.2521	0.0018826	2.0107	0.001164	578.880371674742	27.071	0.24943	27.071	26.942	27.191	0					10	4	3	0	0	0	0.027462	1	751	751		27.882	3.6795	1	51188			14949	10026	12155	12171	16474	16474					0.1708494021640945
GRRRKYNP	8	Unmodified	_GRRRKYNP_					0	0	0		ENSG00000166987|ENST00000355673|MBD6	ENSG00000166987|ENST00000355673|MBD6	ENSG00000166987|ENST00000355673|MBD6	MULTI-SECPEP	OvCa9_classI_Rep3	3	524.3094482421875	2	523.801949	1045.58934	-1.0428	-0.00054624	2.3294	0.0012202	1.2866	0.00067391	523.8033394816207	116.79	1.2878	115.74	115.39	116.68	-1.0414					45	25	3	0	0	0	0.028476	1	8830	8830		12.207	0	1	47281			14950	6745	12156	12172	16475	16475					0.06837325099945701
GRRRRRRRRRE	11	Unmodified	_GRRRRRRRRRE_					0	0	0		ENST00000321143.8_1_X:11129465-11130266:+|nuORF	ENST00000321143.8_1_X:11129465-11130266:+|nuORF	ENST00000321143.8_1_X:11129465-11130266:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	403.6988830566406	4	403.253432	1608.98462	0.93477	0.00037695	0.8115	0.00032724	1.7463	0.00070419	403.2537329027015	24.218	0.34937	24.218	24.036	24.386	0					13	6	3	0	0	0	0.02656	1	433	433		1.2319	0.86052	1	33924			14951	10373	12157	12173	16476	16476					0.20448783345068478
GRRRRTPRP	9	Unmodified	_GRRRRTPRP_					0	0	0		ENST00000409870.1_1_2:191045448-191045859:+|nuORF	ENST00000409870.1_1_2:191045448-191045859:+|nuORF	ENST00000409870.1_1_2:191045448-191045859:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	576.3544921875	2	576.352671	1150.69079	-0.5103	-0.00029411	1.8326	0.0010563	1.3223	0.00076214	576.3538085628105	72.001	4.4609	69.399	69.081	73.542	-2.6023					248	89	5	0	0	0	0.3076	1	3437	3437		62.107	9.1707	1	7516400			14952	11539	12158	12174	16477	16477					0.12147196522482773
GRRRSPPQRR	10	Unmodified	_GRRRSPPQRR_					0	0	0		ENST00000573539.5_1_17:3442880-3458098:-|nuORF	ENST00000573539.5_1_17:3442880-3458098:-|nuORF	ENST00000573539.5_1_17:3442880-3458098:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	633.36767578125	2	633.374135	1264.73372	-3.894	-0.0024663	-3.9499	-0.0025018	-7.8439	-0.0049681	633.3715080583703	149.82	2.9263	149.6	148.42	151.35	-0.22696					170	58	4	0	0	0	0.66721	1	15204	15204		34.173	14.176	1	116220			14953	13919	12159	12175	16478	16478					0.1119396657991274
GRRRTRRPP	9	Unmodified	_GRRRTRRPP_					0	0	0			REV__ENST00000381237.5_3_8:22272410-22273351:+|nuORF	REV__ENST00000381237.5_3_8:22272410-22273351:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	576.3541259765625	2	576.352671	1150.69079	-0.29031	-0.00016732	1.7627	0.0010159	1.4724	0.00084862	576.3537371528553	71.759	4.075	69.252	68.91	72.985	-2.5071					188	77	5	0	0	0	0.3076	2	5781	5781;5799		62.107	1.9892	1	5146300	+		14954	25194	12160	12176	16479;16480	16479					0.12147196522482773
GRRRTRRPP	9	Unmodified	_GRRRTRRPP_					0	0	0			REV__ENST00000381237.5_3_8:22272410-22273351:+|nuORF	REV__ENST00000381237.5_3_8:22272410-22273351:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	576.353271484375	2	576.352671	1150.69079	-0.5103	-0.00029411	1.8326	0.0010563	1.3223	0.00076214	576.3538085628105	72.001	4.4609	69.399	69.081	73.542	-2.6023					248	89	5	0	0	0	0.38969	2	3389	3389;3407		52.937	0	1	7516400	+		14955	25194	12160	12176	16481;16482	16481					0.12147196522482773
GRRVPAKP	8	Unmodified	_GRRVPAKP_					0	0	0		ENST00000605573.1_1_3:187871449-187871548:-|nuORF	ENST00000605573.1_1_3:187871449-187871548:-|nuORF	ENST00000605573.1_1_3:187871449-187871548:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	440.7671203613281	2	440.777411	879.540269	3.1259	0.0013778	2.5446	0.0011216	5.6705	0.0024994	440.77847077610113	81.875	0.70116	81.875	81.736	82.437	0					22	16	2	0	0	0	0.028476	1	8442	8442		25.45	0	1	571340			14956	14269	12161	12177	16483	16483					0.09568036810981084
GRRVQKYR	8	Unmodified	_GRRVQKYR_					0	0	0			REV__ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|8.709205843380579|0.1449238599365492|5.91|406.0|24|3|sense	REV__ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|8.709205843380579|0.1449238599365492|5.91|406.0|24|3|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	531.81689453125	2	531.817599	1061.62064	-1.8698	-0.0009944	0.56891	0.00030256	-1.3009	-0.00069184	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.75241	1	13869	13869		25.45	1.2474	1	166960	+		14957	28116	12162	12178	16484	16484					0.09229898134026371
GRRVVPAN	8	Unmodified	_GRRVVPAN_					0	0	0			REV__ENSG00000052126|ENST00000429027|PLEKHA5	REV__ENSG00000052126|ENST00000429027|PLEKHA5	MULTI-MSMS	OvCa9_classI_Rep3	3	434.7594909667969	2	434.759218	867.503883	-1.3377	-0.00058158	1.4594	0.00063449	0.12169	5.2907E-05	434.7597358333452	139.11	1.8707	138.05	137.63	139.51	-1.0595					91	37	4	0	0	0	0.73626	1	11455	11455		33.516	6.7195	1	610970	+		14958	16690	12163	12179	16485	16485					0.06483159914273529
GRRWRRRRRPK	11	Unmodified	_GRRWRRRRRPK_					0	0	0		ENST00000560168.1_1_19:46269581-46272089:-|nuORF	ENST00000560168.1_1_19:46269581-46272089:-|nuORF	ENST00000560168.1_1_19:46269581-46272089:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.3406372070312	3	527.329558	1578.96685	-0.87358	-0.00046066	0.81057	0.00042744	-0.063012	-3.3228E-05	527.329877424801	86.092	0.86994	84.601	84.245	85.115	-1.4906					43	16	3	0	0	0	0.026497	1	7444	7444		3.2113	0	1	68923			14959	13729	12164	12180	16486	16486					0.2005206809021729
GRSERIRSL	9	Unmodified	_GRSERIRSL_					0	0	0		nc|ENSG00000149930|Q9UL54-2|TAOK2;ENST00000570844.1_1_16:30002083-30002886:+|nuORF	nc|ENSG00000149930|Q9UL54-2|TAOK2	nc|ENSG00000149930|Q9UL54-2|TAOK2	MULTI-MSMS	OvCa99_classI_Rep5	1	537.31201171875	2	537.312346	1072.61014	-0.40858	-0.00021953	-2.698	-0.0014497	-3.1066	-0.0016692	537.3108743431387	33.509	1.0267	33.509	33.039	34.065	0					49	20	4	0	0	0	0.3076	1	1546	1546		62.107	14.45	1	859210			14960	15088	12165	12181	16487	16487					0.07673870688950046
GRSLGKFII	9	Unmodified	_GRSLGKFII_					0	0	0			REV__MER57A-int_dup1703|chr19:23112751-23113886:+|1.0685339057591443|0.266030358890427|2.01|427.0|52|1|anti-sense	REV__MER57A-int_dup1703|chr19:23112751-23113886:+|1.0685339057591443|0.266030358890427|2.01|427.0|52|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	495.80615234375	2	495.808377	989.6022	-1.6284	-0.00080736	-2.787	-0.0013818	-4.4154	-0.0021892	495.8069614829561	143.45	1.4815	143.22	142.7	144.19	-0.22696					60	29	3	0	0	0	0.50149	1	14415	14415		42.396	11.892	1	72131	+		14961	28658	12166	12182	16488	16488					0.10698343439469227
GRSRKHAVD	9	Unmodified	_GRSRKHAVD_					0	0	0		ENST00000537045.5_1_22:19024374-19024692:-|nuORF	ENST00000537045.5_1_22:19024374-19024692:-|nuORF	ENST00000537045.5_1_22:19024374-19024692:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.8250732421875	2	513.283589	1024.55262	-0.41885	-0.00021499	3.248	0.0016672	2.8292	0.0014522	513.2854338037947	77.102	0.78091	75.312	74.946	75.727	-1.7894					18	14	2	0	0	0	0.027459	1	6415	6415		44.377	1.5129	1	13776			14962	13400	12167	12183	16489	16489					0.04133028483374801
GRSRLTHIC	9	Unmodified	_GRSRLTHIC_					0	0	0		ENSG00000130052|ENST00000374599|STARD8;nc|ENSG00000130052|Q92502|STARD8	ENSG00000130052|ENST00000374599|STARD8	ENSG00000130052|ENST00000374599|STARD8	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.831787109375	2	521.782367	1041.55018	-1.7474	-0.00091175	-2.2434	-0.0011706	-3.9908	-0.0020823	521.7809498459146	35.366	0.24681	32.656	32.503	32.75	-2.7097					7	4	2	0	0	0	0.027462	1	1411	1411		27.882	3.6795	1	8178.2			14963	3955	12168	12184	16490	16490					0.031068567540614822
GRSRSLTPQL	10	Unmodified	_GRSRSLTPQL_					0	0	0		nc|ENSG00000087589|Q9NQ75-2|CASS4;ENST00000497244.1_1_20:54987478-55028248:+|nuORF;ENSG00000087589|ENST00000679887|CASS4	nc|ENSG00000087589|Q9NQ75-2|CASS4	nc|ENSG00000087589|Q9NQ75-2|CASS4	MULTI-MSMS	OvCa9_classI_Rep3	3	557.822998046875	2	557.820004	1113.62546	-0.58395	-0.00032574	4.1859	0.002335	3.6019	0.0020092	557.8222651421044	98.984	1.1357	97.299	97.061	98.196	-1.685					51	21	4	0	0	0	0.61634	1	6649	6649		40.058	4.4399	1	446420			14964	1778	12169	12185	16491	16491					0.07318737486116333
GRSSALCSS	9	Unmodified	_GRSSALCSS_					0	0	0			REV__nc|ENSG00000158296|Q8WWT9-4|SLC13A3	REV__nc|ENSG00000158296|Q8WWT9-4|SLC13A3	MULTI-MSMS	OvCa9_classI_Rep4_	4	434.2030334472656	2	434.203084	866.391615	1.6432	0.00071349	-1.2843	-0.00055766	0.35889	0.00015583	434.20235699405873	129.11	2.4152	127.66	126.27	128.68	-1.4565					81	47	4	0	0	0	0.60342	1	12365	12365		31.53	1.0262	1	260680	+		14965	28950	12170	12186	16492	16492					-0.04692481944891824
GRSSTTQM	8	Unmodified	_GRSSTTQM_					0	0	0			REV__nc|ENSG00000053747|Q16787-3|LAMA3	REV__nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-MSMS	OvCa9_classI_Rep2	2	434.2033996582031	2	434.203084	866.391615	1.2394	0.00053816	-0.82374	-0.00035767	0.41569	0.00018049	434.2025952345841	127.91	1.6798	127.68	127.34	129.02	-0.22697					69	33	3	0	0	0	0.7594	1	12519	12519		21.96	1.013	1	238510	+		14966	16695	12171	12187	16493	16493					-0.046924819448804556
GRTAVRHQP	9	Unmodified	_GRTAVRHQP_					0	0	0		nc|ENSG00000167302|Q96N21|TEPSIN	nc|ENSG00000167302|Q96N21|TEPSIN	nc|ENSG00000167302|Q96N21|TEPSIN	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.2808227539062	2	511.286131	1020.55771	2.9309	0.0014985	-3.1203	-0.0015953	-0.18937	-9.6822E-05	511.28495959826256	89.471	0.36987	89.471	89.352	89.722	0					11	8	2	0	0	0	0.027462	1	9581	9581		20.947	0	1	108110			14967	15159	12172	12188	16494	16494					0.048253323459903186
GRTFVAKI	8	Unmodified	_GRTFVAKI_					0	0	0		ENSG00000072195|ENST00000312358|SPEG;nc|ENSG00000072195|Q15772-1|SPEG	ENSG00000072195|ENST00000312358|SPEG	ENSG00000072195|ENST00000312358|SPEG	MULTI-MSMS	OvCa9_classI_Rep4_	4	446.2754821777344	2	446.27417	890.533787	-0.97478	-0.00043502	0.85663	0.00038229	-0.11815	-5.2729E-05	446.2744414722382	72.963	1.6769	69.567	69.253	70.93	-3.3961					57	34	2	0	0	0	0.62474	1	5657	5657		58.782	7.4465	1	564710			14968	1468	12173	12189	16495	16495					0.08414098859600472
GRTHVLLHHC	10	Unmodified	_GRTHVLLHHC_					0	0	0		ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	MULTI-MSMS	OvCa9_classI_Rep3	3	586.8035278320312	2	586.808916	1171.60328	-8.2813	-0.0048596	-1.5336	-0.00089994	-9.815	-0.0057595	586.8077830487384	159.82	3.6388	158.49	157.91	161.55	-1.3316					146	73	3	0	0	0	0.76627	1	13885	13885		23.042	3.0457	1	151840			14969	6650	12174	12190	16496	16496					0.024342345367358575
GRTHVLLHHC	10	Unmodified	_GRTHVLLHHC_					0	0	0		ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.8041381835938	2	586.808916	1171.60328	-6.8597	-0.0040253	-3.0727	-0.0018031	-9.9324	-0.0058284	586.8069299890403	160.36	3.1265	158.75	158.28	161.4	-1.61					144	76	3	0	0	0	0.69986	1	15859	15859		30.504	2.6214	1	162470			14970	6650	12174	12190	16497	16497					0.024342345367358575
GRTKRGRVR	9	Unmodified	_GRTKRGRVR_					0	0	0		ENST00000304056.8_1_7:32919436-32931464:-|nuORF	ENST00000304056.8_1_7:32919436-32931464:-|nuORF	ENST00000304056.8_1_7:32919436-32931464:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8164672851562	2	543.341772	1084.66899	0.97936	0.00053213	-3.0263	-0.0016443	-2.0469	-0.0011122	543.3400702460971	142.62	1.1295	142.62	142.29	143.41	0					40	22	3	0	0	0	0.027462	1	16689	16689		29.15	3.6994	1	147240			14971	10221	12175	12191	16498	16498					0.1300439177393855
GRTLWSHVWL	10	Unmodified	_GRTLWSHVWL_					0	0	0		ENST00000248076.3_1_19:17000717-17000960:+|nuORF	ENST00000248076.3_1_19:17000717-17000960:+|nuORF	ENST00000248076.3_1_19:17000717-17000960:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	417.9169006347656	3	418.896252	1253.66693	-1.3387	-0.00056076	-1.7565	-0.00073577	-3.0951	-0.0012965	418.895465662793	54.728	1.0251	51.481	51.132	52.157	-3.2474					39	19	3	0	0	0	0.027165	1	3376	3376		26.063	6.8007	1	60136			14972	9783	12176	12192	16499	16499					0.05023918245456116
GRTMICFSVL	10	Unmodified	_GRTMICFSVL_					0	0	0			REV__ENST00000481483.1_1_7:142988711-142991459:+|nuORF	REV__ENST00000481483.1_1_7:142988711-142991459:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.7939453125	2	563.791012	1125.56747	1.1252	0.0006344	1.2369	0.00069738	2.3622	0.0013318	563.7915876917513	89.184	1.1349	86.581	86.237	87.371	-2.6027					78	22	5	0	0	0	0.37436	1	7662	7662		71.877	1.0613	1	2005100	+		14973	26478	12177	12193	16500	16500					0.009710162448527626
GRTMRWAL	8	Oxidation (M)	_GRTM(Oxidation (M))RWAL_		GRTM(1)RWAL		GRTM(63)RWAL	0	0	1		ENSG00000127804|ENST00000263092|METTL16;ENST00000574752.5_1_17:2340122-2367575:-|nuORF;METTL16|p.E306*|1|0.04|ENSG00000127804|chr17:2420877-2420878|-/A|frameshift_variant	ENSG00000127804|ENST00000263092|METTL16	ENSG00000127804|ENST00000263092|METTL16	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.76519775390625	2	503.766186	1005.51782	-0.75807	-0.00038189	-3.8708	-0.00195	-4.6289	-0.0023319	503.7641234658958	94.306	1.4911	91.838	91.571	93.062	-2.4685					76	29	4	0	0	0	0.60331	1	8271	8271		63.306	13.77	1	1024600			14974	3846	12178	12194	16501	16501		116			0.015280693510703713
GRTPFLLL	8	Unmodified	_GRTPFLLL_					0	0	0		ENST00000389131.7_1_8:23155097-23155310:-|nuORF	ENST00000389131.7_1_8:23155097-23155310:-|nuORF	ENST00000389131.7_1_8:23155097-23155310:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.78424072265625	2	458.78437	915.554188	-0.33214	-0.00015238	0.064045	2.9383E-05	-0.2681	-0.000123	458.78429918449206	105.19	1.6101	103.18	102.85	104.46	-2.0161					67	31	4	0	0	0	0.65062	1	9546	9546		53.351	2.016	1	299440			14975	11195	12179	12195	16502	16502					0.09303269519432433
GRTPFLLL	8	Unmodified	_GRTPFLLL_					0	0	0		ENST00000389131.7_1_8:23155097-23155310:-|nuORF	ENST00000389131.7_1_8:23155097-23155310:-|nuORF	ENST00000389131.7_1_8:23155097-23155310:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	458.78437	915.554188	-0.24533	-0.00011255	0.1442	6.6155E-05	-0.10114	-4.6399E-05	458.78430911771943	103.58	1.2871	103	102.73	104.02	-0.57639	-0.064945	0.00024442	NaN	53.351	62	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265060			14976	11195	12179	12195							0.09303269519432433
GRTPFLLL	8	Unmodified	_GRTPFLLL_					0	0	0		ENST00000389131.7_1_8:23155097-23155310:-|nuORF	ENST00000389131.7_1_8:23155097-23155310:-|nuORF	ENST00000389131.7_1_8:23155097-23155310:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	458.78437	915.554188	0.34876	0.00016	-0.60692	-0.00027844	-0.25816	-0.00011844	458.78395927165775	104.46	1.4547	103.03	102.76	104.21	-1.4347	-0.041158	-0.00044477	NaN	53.351	59	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	294180			14977	11195	12179	12195							0.09303269519432433
GRTPVLGLAYL	11	Unmodified	_GRTPVLGLAYL_					0	0	0			REV__ENSG00000177971|ENST00000403490|IMP3	REV__ENSG00000177971|ENST00000403490|IMP3	MULTI-MSMS	OvCa99_classI_Rep5	1	580.348876953125	2	580.345323	1158.67609	0.17809	0.00010335	2.6329	0.001528	2.811	0.0016313	580.3466539230848	160.77	1.3039	160.77	160.21	161.51	0					39	25	2	0	0	0	0.65947	1	18874	18874		39.253	3.6345	1	40218	+		14978	22035	12180	12196	16503	16503					0.10310266811143265
GRTRAGLSQL	10	Unmodified	_GRTRAGLSQL_					0	0	0			REV__ENST00000589137.5_1_19:36034159-36036912:-|nuORF	REV__ENST00000589137.5_1_19:36034159-36036912:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	530.3116455078125	2	529.806897	1057.59924	0.35582	0.00018852	-2.2625	-0.0011987	-1.9067	-0.0010102	529.8030255036192	105.38	2.0148	104.03	103.57	105.59	-1.3482					144	38	5	0	0	0	0.44722	1	7402	7402		61.691	0.71934	1	4513200	+		14979	27901	12181	12197	16504	16504					0.07274468314676596
GRTRAPPSL	9	Unmodified	_GRTRAPPSL_					0	0	0		ENST00000534215.5_1_11:46383213-46383393:+|nuORF	ENST00000534215.5_1_11:46383213-46383393:+|nuORF	ENST00000534215.5_1_11:46383213-46383393:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	477.77734375	2	477.777608	953.540663	0.30924	0.00014775	-0.9987	-0.00047716	-0.68946	-0.00032941	477.7771636832581	43.542	2.3879	40.832	40.509	42.897	-2.7097					104	47	3	0	0	0	0.37135	1	2445	2445		54.776	2.4771	1	3363800			14980	13349	12182	12198	16505	16505					0.0620341174017085
GRTSERSHR	9	Unmodified	_GRTSERSHR_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16;nc|ENSG00000221843|Q68DN1|SPATA31H1	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8367309570312	2	543.281577	1084.5486	2.1244	0.0011541	-3.8592	-0.0020966	-1.7348	-0.00094248	543.2795854154342	82.355	0.46712	82.355	82.141	82.609	0					17	10	2	0	0	0	0.027462	1	8502	8502		39.253	3.6345	1	250340			14981	9229	12183	12199	16506	16506					0.009709389896670473
GRTWITLRKRQ	11	Unmodified	_GRTWITLRKRQ_					0	0	0		ENST00000373647.8_1_9:125852638-125860044:+|nuORF	ENST00000373647.8_1_9:125852638-125860044:+|nuORF	ENST00000373647.8_1_9:125852638-125860044:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	472.2822265625	3	472.28451	1413.8317	-6.0448	-0.0028549	4.4561	0.0021045	-1.5887	-0.00075032	472.28675973301637	159.08	3.3809	157.81	156.71	160.09	-1.267					177	72	4	0	0	0	0.72516	1	13788	13788		13.508	2.9211	1	110830			14982	11013	12184	12200	16507	16507					0.14133730385242416
GRVARMRKL	9	Unmodified	_GRVARMRKL_					0	0	0		ENST00000609504.5_2_20:328129-329931:+|nuORF	ENST00000609504.5_2_20:328129-329931:+|nuORF	ENST00000609504.5_2_20:328129-329931:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.27294921875	2	543.837477	1085.6604	2.3008	0.0012512	2.3018	0.0012518	4.6026	0.002503	543.8385809464745	84.236	1.0375	84.236	84.009	85.046	0					44	24	3	0	0	0	0.027426	1	8904	8904		53.351	30.309	1	2920600			14983	14305	12185	12201	16508	16508					0.12099701813099273
GRVDTLLAL	9	Unmodified	_GRVDTLLAL_					0	0	0		tr|A0A7D6VTH8|A0A7D6VTH8_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02410PE=4SV=1	tr|A0A7D6VTH8|A0A7D6VTH8_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02410PE=4SV=1	tr|A0A7D6VTH8|A0A7D6VTH8_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02410PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.2892761230469	2	479.290017	956.565481	-0.66481	-0.00031864	0.92067	0.00044127	0.25586	0.00012263	479.29031792396887	117.84	0.94633	116.49	116.26	117.21	-1.3444					40	17	3	0	0	0	0.27001	1	11022	11022		66.429	0	1	302860			14984	35119	12186	12202	16509	16509					0.0854604682289164
GRVHFHPD	8	Unmodified	_GRVHFHPD_					0	0	0		ENSG00000167800|ENST00000335385|TBX10	ENSG00000167800|ENST00000335385|TBX10	ENSG00000167800|ENST00000335385|TBX10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	482.2861328125	2	482.741025	963.467498	0.57704	0.00027856	-2.2013	-0.0010627	-1.6243	-0.00078412	482.73988965626506	89.617	0.94759	87.042	86.752	87.7	-2.575					28	18	2	0	0	0	0.028476	1	7741	7741		24.203	6.8378	1	59990			14985	6840	12187	12203	16510	16510					-0.015697169824420598
GRVHIETLT	9	Unmodified	_GRVHIETLT_					0	0	0			REV__ENST00000479606.5_1_22:21351789-21352173:+|nuORF	REV__ENST00000479606.5_1_22:21351789-21352173:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.3512573242188	2	513.290548	1024.56654	0.88673	0.00045515	-2.7442	-0.0014086	-1.8575	-0.00095342	513.2890760546555	142.47	0.34998	142.47	142.29	142.64	0					9	6	2	0	0	0	0.027462	1	16628	16628		16.473	0.83134	1	16579	+		14986	26440	12188	12204	16511	16511					0.055242611917947215
GRVHKPQRQ	9	Unmodified	_GRVHKPQRQ_					0	0	0			REV__ROR1|p.N620Kfs*6|1|0.29|ENSG00000185483|chr1:64177900-64177912|ATATTTTAATCGG/-|frameshift_variant	REV__ROR1|p.N620Kfs*6|1|0.29|ENSG00000185483|chr1:64177900-64177912|ATATTTTAATCGG/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.3509521484375	2	553.320506	1104.62646	-0.19667	-0.00010882	3.6868	0.00204	3.4901	0.0019312	553.3224404475371	91.085	0.61695	88.543	88.295	88.912	-2.5425					19	11	2	0	0	0	0.027462	1	7846	7846		38.806	13.232	1	26924	+		14987	22508	12189	12205	16512	16512					0.07832996645697676
GRVHKPQRQ	9	Unmodified	_GRVHKPQRQ_					0	0	0			REV__ROR1|p.N620Kfs*6|1|0.29|ENSG00000185483|chr1:64177900-64177912|ATATTTTAATCGG/-|frameshift_variant	REV__ROR1|p.N620Kfs*6|1|0.29|ENSG00000185483|chr1:64177900-64177912|ATATTTTAATCGG/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	553.320506	1104.62646	2.5163	0.0013923	1.2761	0.00070607	3.7923	0.0020984	553.3211975731666	89.859	0.98956	88.557	88.285	89.274	-1.302	-0.0048744	-0.0023806	NaN	30.504	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32409	+		14988	22508	12189	12205							0.07832996645697676
GRVHKPQRQ	9	Unmodified	_GRVHKPQRQ_					0	0	0			REV__ROR1|p.N620Kfs*6|1|0.29|ENSG00000185483|chr1:64177900-64177912|ATATTTTAATCGG/-|frameshift_variant	REV__ROR1|p.N620Kfs*6|1|0.29|ENSG00000185483|chr1:64177900-64177912|ATATTTTAATCGG/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	553.320506	1104.62646	-1.1198	-0.00061961	4.4858	0.0024821	3.366	0.0018625	553.3224989924611	90.666	1.0149	88.585	88.361	89.376	-2.0805	0.023592	0.0011714	NaN	30.504	30	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41419	+		14989	22508	12189	12205							0.07832996645697676
GRVICPHF	8	Unmodified	_GRVICPHF_					0	0	0		nc|ENSG00000169258|Q7Z2K8-2|GPRIN1	nc|ENSG00000169258|Q7Z2K8-2|GPRIN1	nc|ENSG00000169258|Q7Z2K8-2|GPRIN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.7444763183594	2	464.744722	927.474891	-0.21975	-0.00010213	2.7559	0.0012808	2.5361	0.0011786	464.7458914674293	42.86	0.98394	42.86	42.624	43.608	0					55	22	4	0	0	0	0.028476	1	2857	2857		37.028	26.763	1	2549000			14990	15171	12190	12206	16513	16513					0.008252992936263581
GRVKMWTPL	9	Unmodified	_GRVKMWTPL_					0	0	0		ENST00000519356.1_1_8:33331766-33367302:-|nuORF	ENST00000519356.1_1_8:33331766-33367302:-|nuORF	ENST00000519356.1_1_8:33331766-33367302:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.2941284179688	2	544.307687	1086.60082	-0.45993	-0.00025034	2.9254	0.0015923	2.4655	0.001342	544.30913650715	48.631	0.39062	48.631	48.372	48.762	0					16	8	3	0	0	0	0.027462	1	3596	3596		21.96	0	1	441380			14991	13086	12191	12207	16514	16514					0.06098386079065676
GRVKTLNPYI	10	Unmodified	_GRVKTLNPYI_					0	0	0		tr|A0A553SGN5|A0A553SGN5_NIACIBifunctionalpurinebiosynthesisproteinPurHOS=NialliacirculansOX=1397GN=purHPE=3SV=1	tr|A0A553SGN5|A0A553SGN5_NIACIBifunctionalpurinebiosynthesisproteinPurHOS=NialliacirculansOX=1397GN=purHPE=3SV=1	tr|A0A553SGN5|A0A553SGN5_NIACIBifunctionalpurinebiosynthesisproteinPurHOS=NialliacirculansOX=1397GN=purHPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.8421630859375	2	580.842948	1159.67134	-0.49695	-0.00028865	4.2254	0.0024543	3.7284	0.0021656	581.3446865689184	52.971	0.25919	52.971	52.828	53.087	0					6	5	2	0	0	0	0.02709	1	4178	4178		29.17	5.6474	1	143700			14992	33177	12192	12208	16515	16515					0.09789382668373037
GRVLREAW	8	Unmodified	_GRVLREAW_					0	0	0			REV__PKD2|p.M870Wfs*6|1|0.22|ENSG00000118762|chr4:88074895-88074895|T/-|frameshift_variant	REV__PKD2|p.M870Wfs*6|1|0.22|ENSG00000118762|chr4:88074895-88074895|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.8021240234375	2	493.780151	985.545748	0.44338	0.00021893	-0.034024	-1.68E-05	0.40936	0.00020213	493.77970086636185	60.719	0.79665	57.288	56.898	57.694	-3.43					24	15	2	0	0	0	0.028476	1	4165	4165		47.916	9.1095	1	47083	+		14993	18414	12193	12209	16516	16516					0.0523971560278369
GRVPRRDE	8	Unmodified	_GRVPRRDE_					0	0	0			REV__ENST00000256383.8_1_14:67827044-67827122:+|nuORF	REV__ENST00000256383.8_1_14:67827044-67827122:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	492.76910400390625	2	492.770314	983.526075	3.4784	0.0017141	-3.702	-0.0018242	-0.2236	-0.00011019	492.7683473461379	26.487	0.60609	23.777	23.613	24.219	-2.7097					21	17	2	0	0	0	0.7549	1	377	377		24.203	0.68005	1	27059	+		14994	23890	12194	12210	16517	16517					0.03365339592039618
GRVQAESVVV	10	Unmodified	_GRVQAESVVV_					0	0	0		ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.P6706Tfs*18|1|0.25|ENSG00000154358|chr1:228370088-228370089|-/GA|frameshift_variant;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN	ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN	ENSG00000154358|ENST00000680850|OBSCN	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.7667846679688	2	522.29583	1042.57711	-1.7137	-0.00089503	1.3284	0.0006938	-0.38529	-0.00020124	522.296480941649	43.978	0.38913	43.978	43.78	44.169	0					18	8	3	0	0	0	0.026665	1	2946	2946		42.396	16.822	1	508440			14995	5731;15107	12195	12211	16518	16518					0.057522438462456194
GRVQLAAHR	9	Unmodified	_GRVQLAAHR_					0	0	0			REV__ENST00000562416.1_1_16:69788588-69788813:-|nuORF	REV__ENST00000562416.1_1_16:69788588-69788813:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	504.295166015625	2	504.296499	1006.57845	2.4403	0.0012306	-2.6833	-0.0013532	-0.24298	-0.00012254	504.29503035872443	26.545	0.48776	23.835	23.66	24.147	-2.7097					19	13	2	0	0	0	0.70177	1	382	382		17.365	0	1	16913	+		14996	27647	12196	12212	16519	16519					0.07541922725636141
GRVRQLLRQ	9	Unmodified	_GRVRQLLRQ_					0	0	0		ENSG00000160994|ENST00000292574|CCDC105;CCDC105|p.K210Rfs*25|1|0.07|ENSG00000160994|chr19:15013729-15013729|A/-|frameshift_variant	ENSG00000160994|ENST00000292574|CCDC105	ENSG00000160994|ENST00000292574|CCDC105	MULTI-MSMS	OvCa9_classI_Rep3	3	563.353271484375	2	563.351806	1124.68906	1.3942	0.00078545	2.2028	0.0012409	3.597	0.0020264	563.3529214369328	62.001	0.76881	58.933	58.707	59.476	-3.0685					33	18	3	0	0	0	0.70177	1	2228	2228		17.365	1.7232	1	22286			14997	6112	12197	12213	16520	16520					0.13170142713875066
GRVTIEQVH	9	Unmodified	_GRVTIEQVH_					0	0	0			REV__ENST00000509525.5_1_5:132534789-132560973:-|nuORF	REV__ENST00000509525.5_1_5:132534789-132560973:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.7879028320312	2	519.788173	1037.56179	-1.3497	-0.00070156	0.48164	0.00025035	-0.86807	-0.00045121	519.788411690526	42.815	1.5028	39.808	39.486	40.989	-3.0074					69	28	5	0	0	0	0.3249	1	2036	2036		60.118	5.3419	1	1003900	+		14998	16693	12198	12214	16521	16521					0.04451377049053917
GRVYCRQAH	9	Unmodified	_GRVYCRQAH_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.3614501953125	2	545.272167	1088.52978	0.80934	0.00044131	-3.5283	-0.0019239	-2.719	-0.0014826	545.2703146456065	157.75	0.51019	157.75	157.5	158.01	0					13	9	2	0	0	0	0.027462	1	18481	18481		18.324	0	1	19917	+		14999	29089	12199	12215	16522	16522					-0.010943139057644657
GRVYYLEHP	9	Unmodified	_GRVYYLEHP_					0	0	0		ENSG00000140511|ENST00000359595|HAPLN3	ENSG00000140511|ENST00000359595|HAPLN3	ENSG00000140511|ENST00000359595|HAPLN3	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.830810546875	2	567.290548	1132.56654	0.49828	0.00028267	-3.7724	-0.00214	-3.2741	-0.0018574	567.2881799345449	73.871	0.57889	73.871	73.597	74.176	0					32	14	3	0	0	0	0.027462	1	7231	7231		31.955	5.1588	1	3794500			15000	4851	12200	12216	16523	16523					0.005562611917866889
GRWDQPPLD	9	Unmodified	_GRWDQPPLD_					0	0	0		ENSG00000149633|ENST00000279024|KIAA1755;ENST00000460881.5_1_20:36841446-36845354:-|nuORF;ENST00000487506.1_1_20:36841446-36845915:-|nuORF	ENSG00000149633|ENST00000279024|KIAA1755	ENSG00000149633|ENST00000279024|KIAA1755	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.741943359375	2	542.26453	1082.51451	0.077214	4.1871E-05	0.37073	0.00020103	0.44794	0.0002429	542.2648172580424	73.622	0.54106	73.622	73.479	74.02	0					31	13	5	0	0	0	0.027462	1	7272	7272		29.17	8.2231	1	1252100			15001	5481	12201	12217	16524	16524					-0.023449022219665494
GRWTRRAE	8	Unmodified	_GRWTRRAE_					0	0	0		ENST00000332012.5_1_17:79278372-79278921:-|nuORF;nc|ENSG00000185168|Q8N8I6|LINC00482	ENST00000332012.5_1_17:79278372-79278921:-|nuORF	ENST00000332012.5_1_17:79278372-79278921:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.791748046875	2	516.278306	1030.54206	-0.26401	-0.0001363	1.0357	0.0005347	0.77167	0.0003984	516.7809933960527	77.309	0.88611	75.519	74.998	75.884	-1.7894					19	16	2	0	0	0	0.028476	1	6402	6402		24.203	0	1	20818			15002	10451	12202	12218	16525	16525					0.028010458289372764
GRWTTPNHH	9	Unmodified	_GRWTTPNHH_					0	0	0		nc|ENSG00000009694|Q9UKZ4-2|TENM1;ENSG00000009694|ENST00000371130|TENM1	nc|ENSG00000009694|Q9UKZ4-2|TENM1	nc|ENSG00000009694|Q9UKZ4-2|TENM1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.8020629882812	2	553.267939	1104.52132	0.39766	0.00022001	1.0535	0.00058285	1.4511	0.00080286	553.2685293120733	59.797	2.0278	56.405	55.755	57.782	-3.392					51	40	2	0	0	0	0.027462	1	4093	4093		45.952	1.5748	1	79860			15003	930	12203	12219	16526	16526					-0.02675544550743325
GRYFWSIPE	9	Unmodified	_GRYFWSIPE_					0	0	0		ENSG00000165379|ENST00000298119|LRFN5	ENSG00000165379|ENST00000298119|LRFN5	ENSG00000165379|ENST00000298119|LRFN5	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.33203125	2	577.785099	1153.55564	0.67353	0.00038916	-2.1406	-0.0012368	-1.4671	-0.00084767	577.7839720630428	132.51	0.85236	132.51	132.23	133.08	0					24	17	2	0	0	0	0.027402	1	15383	15383		47.657	0	1	54821			15004	6556	12204	12220	16527	16527					-0.014991411824667011
GRYKKRLFMT	10	Unmodified	_GRYKKRLFMT_					0	0	0			REV__ENSG00000198780|ENST00000687041|FAM169A	REV__ENSG00000198780|ENST00000687041|FAM169A	MULTI-MSMS	OvCa99_classI_Rep5	1	433.91571044921875	3	433.916658	1298.72815	0.052673	2.2856E-05	0.32996	0.00014317	0.38263	0.00016603	433.9166737783989	24.524	0.35102	24.524	24.336	24.687	0					10	6	3	0	0	0	0.79792	1	463	463		19.263	0.73163	1	21653	+		15005	23060	12205	12221	16528	16528					0.09073106953223942
GRYPEAQSV	9	Unmodified	_GRYPEAQSV_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7;ENST00000403909.2_1_6:139659748-139659847:+|nuORF	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-MSMS	OvCa99_classI_Rep5	1	503.75201416015625	2	503.751256	1005.48796	-0.47395	-0.00023875	0.20579	0.00010367	-0.26816	-0.00013508	503.7512732081583	49.198	1.0492	49.198	48.807	49.856	0					70	23	5	0	0	0	0.14855	1	3659	3659		85.161	2.9203	1	8950300			15006	6883	12206	12222	16529	16529					-0.014565911132876863
GSDGSTRVV	9	Unmodified	_GSDGSTRVV_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OvCa9_classI_Rep2	2	439.2220458984375	2	439.222331	876.430109	0.84058	0.0003692	-0.95666	-0.00042019	-0.11608	-5.0985E-05	439.2217630756464	40.186	1.5337	37.477	37.052	38.586	-2.7097					73	30	4	0	0	0	0.060996	4	2013	2002;2007;2013;2020		112.41	48.204	1	468050			15007	1949	12207	12223	16530;16531;16532;16533	16532					-0.013048530387095525
GSEAQKLLR	9	Unmodified	_GSEAQKLLR_					0	0	0			REV__CCDC63|p.L313Q|1|0.08|ENSG00000173093|chr12:110884114-110884114|T/A|missense_variant	REV__CCDC63|p.L313Q|1|0.08|ENSG00000173093|chr12:110884114-110884114|T/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	501.28839111328125	2	501.290548	1000.56654	-5.0178	-0.0025154	4.3915	0.0022014	-0.62633	-0.00031397	501.2925573745575	157.06	0.43016	156.83	156.57	157	-0.22696					16	9	2	0	0	0	0.70685	1	15989	15989		15.642	0.97771	1	12939	+		15008	15750	12208	12224	16534	16534					0.06628261191804086
GSFGKVFLV	9	Unmodified	_GSFGKVFLV_					0	0	0		nc|ENSG00000117676|Q15418-4|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;ENST00000524436.5_1_1:26856411-26877988:+|nuORF;ENST00000530607.1_1_1:26872355-26877988:+|nuORF;RPS6KA3|p.H412Sfs*9|1|0.09|ENSG00000177189|chrX:20172865-20172866|-/A|frameshift_variant;RPS6KA3|p.R458Lfs*33|1|0.06|ENSG00000177189|chrX:20169473-20169474|-/GCTGCGCTGGCTGGAGTGCAGTGGTGCGATAA|frameshift_variant;RPS6KA3|p.V489Gfs*13|1|0.09|ENSG00000177189|chrX:20167725-20167726|-/AAAAATAAGCCAGGCACGGTGGTGTTCTC|frameshift_variant;ENSG00000177189|ENST00000379565|RPS6KA3;ENSG00000072133|ENST00000262752|RPS6KA6;nc|ENSG00000072133|Q9UK32-2|RPS6KA6;ENST00000525582.1_1_1:26873450-26873871:+|nuORF;ENST00000474266.1_1_X:20222119-20236956:-|nuORF	nc|ENSG00000117676|Q15418-4|RPS6KA1	nc|ENSG00000117676|Q15418-4|RPS6KA1	MULTI-MSMS	OvCa99_classI_Rep5	1	477.2774963378906	2	477.276378	952.538203	1.4069	0.0006715	0.94778	0.00045235	2.3547	0.0011239	477.2766506631938	109.37	0.48477	109.37	109.11	109.59	0					23	10	3	0	0	0	0.49652	1	12386	12386		42.864	5.7052	1	568790			15009	3272	12209	12225	16535	16535					0.06003563282513369
GSFKEALNV	9	Unmodified	_GSFKEALNV_					0	0	0		nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72	nc|ENSG00000174780|O76094-2|SRP72	nc|ENSG00000174780|O76094-2|SRP72	MULTI-MSMS	OvCa99_classI_Rep5	1	482.7599792480469	2	482.758549	963.502546	1.8354	0.00088604	0.23938	0.00011556	2.0748	0.0010016	482.75842190112934	77.85	1.0754	77.85	77.381	78.457	0					46	25	4	0	0	0	0.16264	1	7867	7867		82.75	10.873	1	1749800			15010	7490	12210	12226	16536	16536					0.01933481034848228
GSFLYIWTI	9	Unmodified	_GSFLYIWTI_					0	0	0			REV__ENSG00000133424|ENST00000397394|LARGE1;REV__LARGE-OPA3|2|fusion	REV__LARGE-OPA3|2|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	550.8128662109375	2	550.294768	1098.57498	0.47767	0.00026286	-4.3798	-0.0024102	-3.9021	-0.0021473	550.2920496771427	107.04	1.223	106.73	106.27	107.5	-0.30836					49	24	3	0	0	0	0.027462	1	9936	9936		21.96	11.094	1	41208	+		15011	19145;28614	12211	12227	16537	16537					0.029638151084100173
GSFLYIWTI	9	Unmodified	_GSFLYIWTI_					0	0	0			REV__ENSG00000133424|ENST00000397394|LARGE1;REV__LARGE-OPA3|2|fusion	REV__LARGE-OPA3|2|fusion	MULTI-MATCH	OvCa9_classI_Rep3	3		2	550.294768	1098.57498	-0.30456	-0.0001676	-3.6681	-0.0020185	-3.9727	-0.0021861	550.2926291801666	107.9	1.2938	106.7	106.27	107.56	-1.1978	-0.0071732	-0.00026337	NaN	21.96	46	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43879	+		15012	19145;28614	12211	12227							0.029638151084100173
GSFLYIWTI	9	Unmodified	_GSFLYIWTI_					0	0	0			REV__ENSG00000133424|ENST00000397394|LARGE1;REV__LARGE-OPA3|2|fusion	REV__LARGE-OPA3|2|fusion	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	550.294768	1098.57498	-1.9665	-0.0010821	-2.2287	-0.0012265	-4.1952	-0.0023086	550.29359527935	108.42	1.0101	106.69	106.32	107.33	-1.7256	-0.015434	0.0013208	NaN	21.96	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50876	+		15013	19145;28614	12211	12227							0.029638151084100173
GSGCAGTS	8	Unmodified	_GSGCAGTS_					0	0	0			REV__ENST00000572125.1_1_16:4409158-4409606:-|nuORF	REV__ENST00000572125.1_1_16:4409158-4409606:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	638.2942504882812	1	639.240266	638.232989	1.3459	0.00086035	-0.39639	-0.00025339	0.94951	0.00060696	639.2398714470231	155.97	3.5332	155.97	154.93	158.46	0					106	70	2	0	0	0	0.028476	1	18461	18461		3.9852	2.7801	1	74208	+		15014	27748	12212	12228	16538	16538					-0.10059775853164865
GSGIPGAPADW	11	Unmodified	_GSGIPGAPADW_					0	0	0		nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.286376953125	2	514.245806	1026.47706	1.8469	0.00094975	1.9127	0.00098358	3.7596	0.0019333	514.2465799938358	129.91	0.3959	128.43	128.32	128.71	-1.4748					12	7	2	0	0	0	0.025265	1	12478	12478		42.864	5.8358	1	12140			15015	4564	12213	12229	16539	16539					-0.03511993487586551
GSGVSLASKKS	11	Unmodified	_GSGVSLASKKS_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	OvCa9_classI_Rep3	3	510.8009338378906	2	510.787838	1019.56112	0.73067	0.00037322	-3.3289	-0.0017004	-2.5983	-0.0013272	510.78611489546563	68.234	0.90075	65.42	65.162	66.063	-2.8144					30	17	2	0	0	0	0.026189	1	2918	2918		26.063	9.3584	1	35026			15016	3687	12214	12230	16540	16540					0.05212537609327228
GSGVSLASKKS	11	Unmodified	_GSGVSLASKKS_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MATCH	OvCa9_classI_Rep2	2		2	510.787838	1019.56112	-1.1471	-0.00058594	-0.97814	-0.00049962	-2.1253	-0.0010856	510.7874439323263	67.854	0.83865	65.193	64.693	65.532	-2.661	-0.11366	0.0018093	NaN	26.063	26	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19874			15017	3687	12214	12230							0.05212537609327228
GSHSMRYF	8	Oxidation (M)	_GSHSM(Oxidation (M))RYF_		GSHSM(1)RYF		GSHSM(41)RYF	0	0	1		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;nc|ENSG00000204632|P17693-7|HLA-G;ENST00000487245.5_1_6:31239370-31239763:-|nuORF;nc|ENSG00000204632|P17693-3|HLA-G;nc|ENSG00000204632|P17693-6|HLA-G;nc|ENSG00000204632|P17693-2|HLA-G;chr6:31271868-31272583|229|23.39|0.0|21.16|-|2|HLA-C,None|1;chr6:31271868-31272617|163|28.29|0.0|16.53|-|2|HLA-C,None|1;nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF	ENSG00000234745|ENST00000412585|HLA-B;chr6:31271868-31272617|163|28.29|0.0|16.53|-|2|HLA-C,None|1;nc|ENSG00000204632|P17693-4|HLA-G;ENSG00000206503|ENST00000376809|HLA-A	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa99_classI_Rep5	1	500.7185974121094	2	500.718901	999.42325	-0.58213	-0.00029148	0.41901	0.00020981	-0.16312	-8.1675E-05	500.7189261253765	39.568	7.3122	39.568	38.972	46.284	0					289	166	3	0	0	0	0.71267	1	2311	2311		40.778	8.8233	1	1705100			15018	9301;9098;9014;509	12215	12231	16541	16541		11;273;277			-0.07648489190921737
GSHSMRYF	8	Oxidation (M)	_GSHSM(Oxidation (M))RYF_		GSHSM(1)RYF		GSHSM(42)RYF	0	0	1		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;nc|ENSG00000204632|P17693-7|HLA-G;ENST00000487245.5_1_6:31239370-31239763:-|nuORF;nc|ENSG00000204632|P17693-3|HLA-G;nc|ENSG00000204632|P17693-6|HLA-G;nc|ENSG00000204632|P17693-2|HLA-G;chr6:31271868-31272583|229|23.39|0.0|21.16|-|2|HLA-C,None|1;chr6:31271868-31272617|163|28.29|0.0|16.53|-|2|HLA-C,None|1;nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF	ENSG00000234745|ENST00000412585|HLA-B;chr6:31271868-31272617|163|28.29|0.0|16.53|-|2|HLA-C,None|1;nc|ENSG00000204632|P17693-4|HLA-G;ENSG00000206503|ENST00000376809|HLA-A	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.7198486328125	2	500.718901	999.42325	-1.4109	-0.00070645	0.99623	0.00049883	-0.41463	-0.00020761	500.71924144435565	45.392	1.8695	42.353	42.075	43.945	-3.0385					96	35	4	0	0	0	0.70469	1	2313	2313		42.396	10.441	1	577360			15019	9301;9098;9014;509	12215	12231	16542	16542		11;273;277			-0.07648489190921737
GSHSMRYF	8	Unmodified	_GSHSMRYF_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;nc|ENSG00000204632|P17693-7|HLA-G;ENST00000487245.5_1_6:31239370-31239763:-|nuORF;nc|ENSG00000204632|P17693-3|HLA-G;nc|ENSG00000204632|P17693-6|HLA-G;nc|ENSG00000204632|P17693-2|HLA-G;chr6:31271868-31272583|229|23.39|0.0|21.16|-|2|HLA-C,None|1;chr6:31271868-31272617|163|28.29|0.0|16.53|-|2|HLA-C,None|1;nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF	ENSG00000234745|ENST00000412585|HLA-B;chr6:31271868-31272617|163|28.29|0.0|16.53|-|2|HLA-C,None|1;nc|ENSG00000204632|P17693-4|HLA-G;ENSG00000206503|ENST00000376809|HLA-A	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa99_classI_Rep5	1	492.7225341796875	2	492.721444	983.428335	-0.86708	-0.00042723	-0.072785	-3.5863E-05	-0.93986	-0.00046309	492.72144927060003	50.487	2.189	50.487	50.201	52.39	0					93	50	3	0	0	0	0.48084	3	3820	3820;3844;3869		79.451	29.426	1	23760000			15020	9301;9098;9014;509	12215	12232	16543;16544;16545	16543					-0.06404185328312906
GSHSMRYFF	9	Unmodified	_GSHSMRYFF_					0	0	0		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-MSMS	OvCa99_classI_Rep5	1	566.25732421875	2	566.255651	1130.49675	2.1191	0.0012	-0.010494	-5.9423E-06	2.1086	0.001194	566.2554234237161	77.649	1.332	77.649	77.336	78.668	0					79	31	4	0	0	0	0.40818	3	7846	7820;7846;7872		51.193	17.02	1	7634400			15021	9098	12216	12233	16546;16547;16548	16547					-0.0632794074845151
GSHSMRYFFT	10	Unmodified	_GSHSMRYFFT_					0	0	0		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-MSMS	OvCa99_classI_Rep5	1	616.7813720703125	2	616.77949	1231.54443	2.0017	0.0012346	-0.020425	-1.2598E-05	1.9813	0.001222	616.7794636904088	76.676	1.8099	76.676	76.324	78.134	0					148	43	6	0	0	0	0.14369	4	7702	7674;7702;7732;7763		81.525	40.098	1	21470000			15022	9098	12217	12234	16549;16550;16551;16552	16550					-0.06208286548280739
GSHSMRYFFT	10	Oxidation (M)	_GSHSM(Oxidation (M))RYFFT_		GSHSM(1)RYFFT		GSHSM(55)RYFFT	0	0	1		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-MSMS	OvCa9_classI_Rep4_	4	624.7780151367188	2	624.776948	1247.53934	-0.72774	-0.00045467	0.70547	0.00044076	-0.022266	-1.3911E-05	624.7772112613017	70.072	1.4514	66.59	66.201	67.652	-3.4812					85	29	4	0	0	0	0.49595	2	5290	5279;5290		54.722	12.311	1	591070			15023	9098	12217	12235	16553;16554	16554		273			-0.0745259041088957
GSHSMRYFFT	10	Oxidation (M)	_GSHSM(Oxidation (M))RYFFT_					0	0	1		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	624.776948	1247.53934	-1.373	-0.00085781	1.1018	0.00068839	-0.27115	-0.00016941	624.777556054725	69.038	1.8475	66.418	65.918	67.766	-2.6203	-0.08625	0.00025871	NaN	54.722	95	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	439060			15024	9098	12217	12235				273			-0.0745259041088957
GSHSMRYFY	9	Unmodified	_GSHSMRYFY_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa99_classI_Rep5	1	574.2542724609375	2	574.253108	1146.49166	-0.60956	-0.00035004	0.48995	0.00028136	-0.11961	-6.8684E-05	574.253239562525	61.787	1.3609	61.787	61.416	62.777	0					97	32	6	0	0	0	0.045281	2	5458	5458;5491		122.18	48.201	1	11081000			15025	9301	12218	12236	16555;16556	16555					-0.07572244611083079
GSHSMRYFYT	10	Unmodified	_GSHSMRYFYT_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa99_classI_Rep5	1	624.7783813476562	2	624.776948	1247.53934	0.060505	3.7802E-05	-0.23214	-0.00014503	-0.17163	-0.00010723	624.7767764777958	62.605	1.0016	62.605	62.335	63.337	0					64	24	5	0	0	0	0.41036	2	5574	5574;5606		66.962	20.99	1	14274000			15026	9301	12219	12237	16557;16558	16557					-0.0745259041088957
GSHSMRYFYT	10	Unmodified	_GSHSMRYFYT_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep4_	4	624.7774658203125	2	624.776948	1247.53934	1.3131	0.00082037	-1.6341	-0.0010209	-0.32103	-0.00020057	624.7758077178546	67.75	1.3745	64.259	63.938	65.312	-3.4902					73	27	4	0	0	0	0.50873	1	4991	4991		53.089	8.7118	1	537180			15027	9301	12219	12237	16559	16559					-0.0745259041088957
GSHSMRYFYT	10	Unmodified	_GSHSMRYFYT_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	624.776948	1247.53934	-0.62492	-0.00039043	0.62149	0.00038829	-0.003427	-2.1411E-06	624.7772176874271	66.792	1.438	64.101	63.721	65.159	-2.6911	-0.079385	0.0013714	NaN	53.089	81	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276350			15028	9301	12219	12237							-0.0745259041088957
GSHSMRYFYT	10	Oxidation (M)	_GSHSM(Oxidation (M))RYFYT_		GSHSM(1)RYFYT		GSHSM(72)RYFYT	0	0	1		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep4_	4	632.775634765625	2	632.774405	1263.53426	0.34999	0.00022146	-0.15068	-9.5348E-05	0.19931	0.00012612	632.7742109074372	56.646	1.575	53.351	52.97	54.545	-3.2944					88	30	5	0	0	0	0.37132	2	3634	3634;3644		72.243	15.809	1	733990			15029	9301	12219	12238	16560;16561	16560		277			-0.08696894273521139
GSHSMRYFYT	10	Oxidation (M)	_GSHSM(Oxidation (M))RYFYT_					0	0	1		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	632.774405	1263.53426	-1.6461	-0.0010416	1.7412	0.0011018	0.095099	6.0176E-05	632.7753209280083	56.054	1.7343	53.25	52.78	54.515	-2.804	-0.050824	0.0015964	NaN	72.243	77	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200940			15030	9301	12219	12238				277			-0.08696894273521139
GSIIFLISRF	10	Unmodified	_GSIIFLISRF_					0	0	0			REV__tr|A0A7D7AE81|A0A7D7AE81_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01485PE=4SV=1	REV__tr|A0A7D7AE81|A0A7D7AE81_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01485PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	576.839599609375	2	576.842416	1151.67028	-1.04	-0.00059989	-3.2809	-0.0018926	-4.3209	-0.0024925	576.8405137933769	28.415	0.44837	28.415	28.24	28.688	0					17	8	3	0	0	0	0.6349	1	932	932		37.812	1.3648	1	148030	+		15031	32702	12220	12239	16562	16562					0.10051168299469282
GSKLIPGMIDI	11	Unmodified	_GSKLIPGMIDI_					0	0	0		tr|A0A553SFF8|A0A553SFF8_NIACIN-acetylglucosamine-6-phosphatedeacetylaseOS=NialliacirculansOX=1397GN=nagAPE=3SV=1	tr|A0A553SFF8|A0A553SFF8_NIACIN-acetylglucosamine-6-phosphatedeacetylaseOS=NialliacirculansOX=1397GN=nagAPE=3SV=1	tr|A0A553SFF8|A0A553SFF8_NIACIN-acetylglucosamine-6-phosphatedeacetylaseOS=NialliacirculansOX=1397GN=nagAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	572.3272705078125	2	572.325742	1142.63693	-0.31821	-0.00018212	3.2477	0.0018587	2.9295	0.0016766	572.3274499626856	39.245	1.8689	36.319	35.948	37.817	-2.9264					87	34	4	0	0	0	0.66495	1	1610	1610		38.754	4.5811	1	787270			15032	33035	12221	12240	16563	16563					0.07131798465252359
GSKSLLLGIM	10	Unmodified	_GSKSLLLGIM_					0	0	0		chr6:109250991-109254448|247|18.56|0.13|7.16|+|0|TE_info:L1PA2,L1PA2_dup2028,L1,LINE,donor,-,109245219,109250991|None,CCDC162P|9	chr6:109250991-109254448|247|18.56|0.13|7.16|+|0|TE_info:L1PA2,L1PA2_dup2028,L1,LINE,donor,-,109245219,109250991|None,CCDC162P|9	chr6:109250991-109254448|247|18.56|0.13|7.16|+|0|TE_info:L1PA2,L1PA2_dup2028,L1,LINE,donor,-,109245219,109250991|None,CCDC162P|9	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.8026428222656	2	509.801903	1017.58925	2.0238	0.0010317	1.6092	0.00082039	3.633	0.0018521	509.80258654056354	136.53	4.9049	134.99	133.61	138.51	-1.5437					290	101	5	0	0	0	0.69073	1	13373	13373		31.53	1.0262	1	173450			15033	504	12222	12241	16564	16564					0.08116144265056846
GSLDREQLLE	10	Unmodified	_GSLDREQLLE_					0	0	0		ENSG00000074276|ENST00000261944|CDHR2	ENSG00000074276|ENST00000261944|CDHR2	ENSG00000074276|ENST00000261944|CDHR2	MULTI-MSMS	OvCa99_classI_Rep5	1	581.3040161132812	2	580.30131	1158.58807	-1.0562	-0.00061289	0.88145	0.00051151	-0.17471	-0.00010139	580.3018455410187	53.526	1.1727	53.526	52.999	54.172	0					87	27	7	0	0	0	0.52439	1	4249	4249		51.193	6.8155	1	6165400			15034	1509	12223	12242	16565	16565					0.0151160142986555
GSLGLPWSH	9	Unmodified	_GSLGLPWSH_					0	0	0		ENST00000525334.5_1_11:843618-847263:+|nuORF	ENST00000525334.5_1_11:843618-847263:+|nuORF	ENST00000525334.5_1_11:843618-847263:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.2618408203125	2	477.245609	952.476666	-0.23331	-0.00011135	-2.7983	-0.0013355	-3.0317	-0.0014468	477.24409402167663	29.67	0.24924	29.67	29.536	29.785	0					6	4	2	0	0	0	0.027462	1	1073	1073		18.324	0.95945	1	19880			15035	13190	12224	12243	16566	16566					-0.0014736841676494805
GSLILPRTPTL	11	Unmodified	_GSLILPRTPTL_					0	0	0			REV__ENSG00000113838|ENST00000338733|TBCCD1	REV__ENSG00000113838|ENST00000338733|TBCCD1	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3561401367188	2	584.358431	1166.70231	-2.312	-0.0013511	-1.149	-0.00067141	-3.461	-0.0020225	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.72479	1	14472	14472		18.262	2.6203	1	180810	+		15036	18172	12225	12244	16567	16567					0.1256253598260173
GSLLVGLLLQC	11	Unmodified	_GSLLVGLLLQC_					0	0	0			REV__ENST00000478241.6_2_12:56224864-56225109:+|nuORF	REV__ENST00000478241.6_2_12:56224864-56225109:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	558.3211059570312	2	558.328285	1114.64202	-6.6196	-0.0036959	0.65449	0.00036542	-5.9651	-0.0033305	558.3288780222969	157.48	0.96848	156.31	155.65	156.62	-1.1707					33	22	2	0	0	0	0.71789	1	13597	13597		23.523	5.2606	1	23182	+		15037	26410	12226	12245	16568	16568					0.08928102327899978
GSLQISDNPWE	11	Unmodified	_GSLQISDNPWE_					0	0	0		ENST00000492813.1_1_1:46499563-46500009:+|nuORF	ENST00000492813.1_1_1:46499563-46500009:+|nuORF	ENST00000492813.1_1_1:46499563-46500009:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	623.2922973632812	2	623.290942	1244.56733	-1.1105	-0.00069219	3.9039	0.0024333	2.7933	0.0017411	623.293220287047	27.725	2.3943	27.725	27.44	29.835	0					85	47	3	0	0	0	0.54737	1	852	852		40.058	3.6114	1	152960			15038	12729	12227	12246	16569	16569					-0.045169889497856275
GSLTLTTAPLT	11	Unmodified	_GSLTLTTAPLT_					0	0	0			REV__nc|ENSG00000211891|P01854-1|IGHE	REV__nc|ENSG00000211891|P01854-1|IGHE	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.3024291992188	2	537.805697	1073.59684	0.52934	0.00028468	-0.93911	-0.00050506	-0.40976	-0.00022037	537.8049660907113	89.876	1.0199	87.796	87.239	88.259	-2.0805					36	19	4	0	0	0	0.025701	1	5600	5600		44.377	21.335	1	269730	+		15039	29123	12228	12247	16570	16570					0.06298575066307421
GSLYHLPHE	9	Unmodified	_GSLYHLPHE_					0	0	0		ENST00000397473.6_1_13:99907233-99907398:-|nuORF	ENST00000397473.6_1_13:99907233-99907398:-|nuORF	ENST00000397473.6_1_13:99907233-99907398:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	526.7627563476562	2	526.761623	1051.50869	-1.1915	-0.00062765	4.2023	0.0022136	3.0108	0.0015859	526.7636529760721	120.92	1.9767	120.72	120.16	122.14	-0.19718					97	39	4	0	0	0	0.55588	1	11699	11699		37.159	0.13063	1	267620			15040	11344	12229	12248	16571	16571					-0.015000007336084309
GSLYSSHP	8	Unmodified	_GSLYSSHP_					0	0	0			REV__ENST00000279249.2_1_11:65082411-65088189:+|nuORF	REV__ENST00000279249.2_1_11:65082411-65088189:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	424.19921875	2	424.200867	846.387182	1.3973	0.00059273	-2.663	-0.0011296	-1.2657	-0.0005369	424.1996803945391	128.73	0.83997	127.64	127.42	128.26	-1.0933					31	16	2	0	0	0	0.74679	1	10160	10160		28.254	5.2118	1	94043	+		15041	24111	12230	12249	16572	16572					-0.04215623096138188
GSNMQRQAVPL	11	Oxidation (M)	_GSNM(Oxidation (M))QRQAVPL_		GSNM(1)QRQAVPL		GSNM(56)QRQAVPL	0	0	1		tr|A0A7D6VQJ5|A0A7D6VQJ5_9CLOTDNA-directedRNApolymerasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=rpoBPE=3SV=1	tr|A0A7D6VQJ5|A0A7D6VQJ5_9CLOTDNA-directedRNApolymerasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=rpoBPE=3SV=1	tr|A0A7D6VQJ5|A0A7D6VQJ5_9CLOTDNA-directedRNApolymerasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=rpoBPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	406.2081604003906	3	406.208278	1215.60301	0.82588	0.00033548	-3.6095	-0.0014662	-2.7836	-0.0011307	406.2067205233192	68.482	0.54047	68.482	68.233	68.774	0					32	12	3	0	0	0	0.4744	1	6476	6476		55.721	7.1195	1	1092700			15042	34853	12231	12250	16573	16573		766			0.00382770026203616
GSPATKTPHPY	11	Unmodified	_GSPATKTPHPY_					0	0	0			REV__nc|ENSG00000165272|Q92482-2|AQP3	REV__nc|ENSG00000165272|Q92482-2|AQP3	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2896728515625	2	578.293288	1154.57202	-7.6654	-0.0044328	1.6458	0.00095178	-6.0195	-0.0034811	578.2940529397285	163.97	0.95636	162.57	161.7	162.66	-1.3925					62	21	3	0	0	0	0.71789	1	14249	14249		23.523	0.48021	1	144290	+		15043	28976	12232	12251	16574	16574					0.0009193998362206912
GSPAVMVLPLT	11	Unmodified	_GSPAVMVLPLT_					0	0	0			REV__nc|ENSG00000290184|Q9BZS1-4|FOXP3	REV__nc|ENSG00000290184|Q9BZS1-4|FOXP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.2877807617188	2	542.807185	1083.59982	1.8388	0.0009981	-3.3658	-0.001827	-1.527	-0.00082887	542.8053986827645	93.031	0.45958	93.031	92.803	93.263	0					18	10	2	0	0	0	0.025597	1	10060	10060		51.193	10.62	1	387860	+		15044	16679	12233	12252	16575	16575					0.06136126919500384
GSPAVMVLPLT	11	Unmodified	_GSPAVMVLPLT_					0	0	0			REV__nc|ENSG00000290184|Q9BZS1-4|FOXP3	REV__nc|ENSG00000290184|Q9BZS1-4|FOXP3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	542.807185	1083.59982	-1.288	-0.00069911	-4.183	-0.0022706	-5.4709	-0.0029697	542.8044689527153	95.105	0.40066	92.636	92.31	92.711	-2.4685	-0.19749	-0.00075254	NaN	28.081	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12777	+		15045	16679	12233	12252							0.06136126919500384
GSPLPLPHF	9	Unmodified	_GSPLPLPHF_					0	0	0			REV__ENST00000523752.5_1_8:22877945-22878461:-|nuORF	REV__ENST00000523752.5_1_8:22877945-22878461:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.31243896484375	2	482.766178	963.517802	2.1894	0.001057	2.9282	0.0014137	5.1177	0.0024706	482.7675088431069	78.355	0.69508	78.355	78.174	78.869	0					20	16	2	0	0	0	0.027462	1	7972	7972		38.806	8.9646	1	385760	+		15046	27095	12234	12253	16576	16576					0.03458392622701467
GSQLRLHLV	9	Unmodified	_GSQLRLHLV_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	OvCa99_classI_Rep5	1	511.80950927734375	2	511.808908	1021.60326	2.5767	0.0013188	-0.52245	-0.0002674	2.0543	0.0010514	511.808428627499	75.147	0.64084	75.147	74.841	75.482	0					34	15	3	0	0	0	0.44568	1	7460	7460		47.657	0	1	2893300			15047	4996	12235	12254	16577	16577					0.09332557808363617
GSQQSGAHSSL	11	Unmodified	_GSQQSGAHSSL_					0	0	0			REV__ENST00000482993.6_3_10:135271189-135271429:+|nuORF	REV__ENST00000482993.6_3_10:135271189-135271429:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	529.7485961914062	2	529.746702	1057.47885	-0.07829	-4.1474E-05	1.6075	0.00085158	1.5292	0.00081011	529.7473874019187	60.926	0.77004	60.926	60.688	61.458	0					48	17	4	0	0	0	0.21979	1	5338	5338		77.318	0	1	2711300	+		15048	26516	12236	12255	16578	16578					-0.04758984469617644
GSRNWGGLRLQ	11	Unmodified	_GSRNWGGLRLQ_					0	0	0			REV__ENST00000354567.6_1_1:77747755-77747866:+|nuORF	REV__ENST00000354567.6_1_1:77747755-77747866:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	622.3385620117188	2	622.336353	1242.65815	0.46643	0.00029028	1.7682	0.0011004	2.2346	0.0013907	622.3373220061544	159.06	1.8648	159.06	158.69	160.56	0					99	37	4	0	0	0	0.68021	1	18644	18644		36.447	2.5251	1	3450400	+		15049	24737	12237	12256	16579	16579					0.04652944608983489
GSRPFLKLT	9	Unmodified	_GSRPFLKLT_					0	0	0		GSE1|p.S1070Gfs*49|1|0.1|ENSG00000131149|chr16:85668211-85668268|CTGCAGTCCTCCAGCCGCGCCCCTCCACCCCAGCACAATGGGCAGCAGGAGCCCCCCA/-|frameshift_variant;GSE1|p.I1065Ffs*73|1|0.28|ENSG00000131149|chr16:85668202-85668202|A/-|frameshift_variant	GSE1|p.S1070Gfs*49|1|0.1|ENSG00000131149|chr16:85668211-85668268|CTGCAGTCCTCCAGCCGCGCCCCTCCACCCCAGCACAATGGGCAGCAGGAGCCCCCCA/-|frameshift_variant	GSE1|p.S1070Gfs*49|1|0.1|ENSG00000131149|chr16:85668211-85668268|CTGCAGTCCTCCAGCCGCGCCCCTCCACCCCAGCACAATGGGCAGCAGGAGCCCCCCA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	509.8034973144531	2	509.805834	1017.59712	-1.3099	-0.00066782	-2.9211	-0.0014892	-4.231	-0.002157	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.69403	1	10984	10984		19.997	0.6368	1	99460			15050	14354	12238	12257	16580	16580					0.08902039576821608
GSSAMFVALT	10	Unmodified	_GSSAMFVALT_					0	0	0			REV__nc|ENSG00000163697|Q92870-2|APBB2	REV__nc|ENSG00000163697|Q92870-2|APBB2	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.80133056640625	2	492.24696	982.479368	-0.22368	-0.00011011	3.7054	0.001824	3.4817	0.0017138	492.24769740893726	46.847	0.35846	46.847	46.762	47.121	0					11	7	3	0	0	0	0.026659	1	3358	3358		64.207	25.401	1	60413	+		15051	20875	12239	12258	16581	16581					-0.012572810741289686
GSSCYCDSCD	10	Unmodified	_GSSCYCDSCD_					0	0	0			REV__chr13:43059012-43068930|141|10.11|0.21|5.56|+|1|TE_info:L1PB1,L1PB1_dup10508,L1,LINE,donor,-,43056899,43059012|None,DNAJC15|15	REV__chr13:43059012-43068930|141|10.11|0.21|5.56|+|1|TE_info:L1PB1,L1PB1_dup10508,L1,LINE,donor,-,43056899,43059012|None,DNAJC15|15	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.3115234375	2	520.143717	1038.27288	-0.82597	-0.00042963	-2.8144	-0.0014639	-3.6404	-0.0018935	520.1415397127452	83.849	0.44405	81.589	81.211	81.655	-2.261					13	9	2	0	0	0	0.027363	1	4775	4775		10.866	2.6343	1	65234	+		15052	15901	12240	12259	16582	16582					-0.24472385027070231
GSSDIVLVPYL	11	Unmodified	_GSSDIVLVPYL_					0	0	0			REV__ENSG00000162896|ENST00000356495|PIGR	REV__ENSG00000162896|ENST00000356495|PIGR	MULTI-MSMS	OvCa9_classI_Rep4_	4	581.8216552734375	2	581.821347	1161.62814	1.4281	0.00083087	-1.7352	-0.0010096	-0.30712	-0.00017869	581.820406598656	137.16	1.0973	135.62	135.27	136.37	-1.5437					52	22	3	0	0	0	0.68263	1	13326	13326		35.618	1.6967	1	91028	+		15053	20789	12241	12260	16583	16583					0.053791481004282105
GSSDRILEL	9	Unmodified	_GSSDRILEL_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.2673034667969	2	495.266739	988.518924	-0.84492	-0.00041846	0.20153	9.9809E-05	-0.6434	-0.00031865	495.2667739686159	92.862	1.044	90.355	90.061	91.105	-2.5072					55	20	4	0	0	0	0.31122	1	8080	8080		61.691	1.3973	1	416720			15054	2975	12242	12261	16584	16584					0.024205622009503713
GSSLEPRQHF	10	Unmodified	_GSSLEPRQHF_					0	0	0		ENST00000474550.5_1_2:101587368-101598935:+|nuORF;ENSG00000170485|ENST00000335681|NPAS2	ENST00000474550.5_1_2:101587368-101598935:+|nuORF	ENST00000474550.5_1_2:101587368-101598935:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.8082885742188	2	579.288537	1156.56252	0.38307	0.00022191	2.5957	0.0015037	2.9788	0.0017256	579.290004976839	66.873	0.76227	66.873	66.575	67.337	0					42	18	3	0	0	0	0.026653	1	6196	6196		49.536	20.386	1	1034300			15055	7109	12243	12262	16585	16585					-0.0094982830189565
GSSLEPRQHF	10	Unmodified	_GSSLEPRQHF_					0	0	0		ENST00000474550.5_1_2:101587368-101598935:+|nuORF;ENSG00000170485|ENST00000335681|NPAS2	ENST00000474550.5_1_2:101587368-101598935:+|nuORF	ENST00000474550.5_1_2:101587368-101598935:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	579.288537	1156.56252	-0.31193	-0.0001807	3.6214	0.0020979	3.3095	0.0019172	579.7925125552985	69.55	0.29894	66.736	66.512	66.811	-2.8144	-0.068561	0.001119	NaN	49.536	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7250.2			15056	7109	12243	12262							-0.0094982830189565
GSSLFPRQR	9	Unmodified	_GSSLFPRQR_					0	0	0		ENSG00000280789|ENST00000320330|PAGR1	ENSG00000280789|ENST00000320330|PAGR1	ENSG00000280789|ENST00000320330|PAGR1	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.2892456054688	2	524.28834	1046.56213	-1.581	-0.00082889	0.78746	0.00041286	-0.79351	-0.00041603	524.2887464140517	44.627	1.9606	41.589	41.156	43.117	-3.0385					101	37	5	0	0	0	0.56889	1	2253	2253		35.618	4.0885	1	2532700			15057	9602	12244	12263	16586	16586					0.04070796768905893
GSSPLSSLTAV	11	Unmodified	_GSSPLSSLTAV_					0	0	0			REV__ENST00000562513.6_1_16:67862078-67865741:-|nuORF	REV__ENST00000562513.6_1_16:67862078-67865741:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.8056945800781	2	509.774396	1017.53424	0.18245	9.3007E-05	-0.35578	-0.00018137	-0.17334	-8.8362E-05	509.77406431550526	113.18	0.7872	111.73	111.41	112.2	-1.4461					26	15	3	0	0	0	0.025257	1	10468	10468		44.377	0	1	61172	+		15058	27649	12245	12264	16587	16587					0.026174289981327092
GSTEKVLRV	9	Unmodified	_GSTEKVLRV_					0	0	0		WDR48|p.N504Afs*10|1|0.18|ENSG00000114742|chr3:39088161-39088177|GAAATGGATATTTTCAA/-|frameshift_variant;nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48	WDR48|p.N504Afs*10|1|0.18|ENSG00000114742|chr3:39088161-39088177|GAAATGGATATTTTCAA/-|frameshift_variant	WDR48|p.N504Afs*10|1|0.18|ENSG00000114742|chr3:39088161-39088177|GAAATGGATATTTTCAA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.7933349609375	2	494.792924	987.571294	-0.31308	-0.00015491	0.40111	0.00019846	0.088028	4.3555E-05	494.79309496580765	52.328	1.1525	49.12	48.842	49.995	-3.208					65	22	4	0	0	0	0.3249	1	3119	3119		60.118	4.6141	1	834550			15059	3037	12246	12265	16588	16588					0.07701145334567627
GSTKKKQQTE	10	Unmodified	_GSTKKKQQTE_					0	0	0			REV__L1PA8A_dup160|chr1:247133953-247136664:+|1.5135014545884105|0.4971293307696565|1.61|429.0|22|1|sense	REV__L1PA8A_dup160|chr1:247133953-247136664:+|1.5135014545884105|0.4971293307696565|1.61|429.0|22|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.3482666015625	2	567.809302	1133.60405	0.21186	0.00012029	3.0905	0.0017548	3.3024	0.0018751	567.8110215969044	91.183	1.4761	88.64	88.346	89.822	-2.5425					76	28	4	0	0	0	0.026956	1	8000	8000		34.173	5.023	1	477570	+		15060	28582	12247	12266	16589	16589					0.04259307666757195
GSTLIYEGLQ	10	Unmodified	_GSTLIYEGLQ_					0	0	0			REV__tr|A0A553SJM9|A0A553SJM9_NIACIPutative2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylatesynthaseOS=NialliacirculansOX=1397GN=menHPE=3SV=1	REV__tr|A0A553SJM9|A0A553SJM9_NIACIPutative2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylatesynthaseOS=NialliacirculansOX=1397GN=menHPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.345703125	2	540.782222	1079.54989	-0.21979	-0.00011886	-0.45491	-0.00024601	-0.6747	-0.00036487	540.7818764187052	81.82	1.3827	80.171	79.265	80.648	-1.6485					39	26	2	0	0	0	0.026464	1	6915	6915		69.628	20.186	1	60555	+		15061	30020	12248	12267	16590	16590					0.013297155152031337
GSVDKNKNKV	10	Unmodified	_GSVDKNKNKV_					0	0	0		nc|ENSG00000080802|O95628-5|CNOT4;nc|ENSG00000080802|O95628-3|CNOT4;nc|ENSG00000080802|O95628-2|CNOT4;nc|ENSG00000080802|O95628|CNOT4;nc|ENSG00000080802|O95628-8|CNOT4;nc|ENSG00000080802|O95628-4|CNOT4;nc|ENSG00000080802|O95628-7|CNOT4;nc|ENSG00000080802|O95628-9|CNOT4;ENSG00000080802|ENST00000541284|CNOT4;nc|ENSG00000080802|O95628-6|CNOT4	nc|ENSG00000080802|O95628-5|CNOT4	nc|ENSG00000080802|O95628-5|CNOT4	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8114013671875	2	544.806562	1087.59857	-0.34787	-0.00018952	0.56427	0.00030742	0.2164	0.0001179	544.8065987191353	47.578	0.77735	47.578	47.251	48.028	0					42	17	4	0	0	0	0.026577	1	3402	3402		49.536	0	1	962980			15062	1640	12249	12268	16591	16591					0.05827628874953916
GSVIELVMVI	10	Unmodified	_GSVIELVMVI_					0	0	0			REV__nc|ENSG00000065534|Q15746-2|MYLK	REV__nc|ENSG00000065534|Q15746-2|MYLK	MULTI-MSMS	OvCa9_classI_Rep2	2	530.3080444335938	2	530.309561	1058.60457	-1.9565	-0.0010376	-1.4392	-0.00076324	-3.3958	-0.0018008	530.308639141227	117.63	1.2915	117.5	117.26	118.55	-0.12869					60	25	4	0	0	0	0.45225	1	11293	11293		60.972	4.2509	1	331320	+		15063	16797	12250	12269	16592	16592					0.07761011062257239
GSVITLGLLL	10	Unmodified	_GSVITLGLLL_					0	0	0			REV__nc|ENSG00000140675|P31639-2|SLC5A2	REV__nc|ENSG00000140675|P31639-2|SLC5A2	MULTI-MSMS	OvCa9_classI_Rep2	2	493.3180847167969	2	493.318243	984.621933	0.61838	0.00030506	-0.65148	-0.00032139	-0.033099	-1.6328E-05	493.31777001150425	123.45	1.971	123.21	122.89	124.86	-0.23193					97	39	4	0	0	0	0.24387	2	11982	11982;11988		87.754	13.078	1	599460	+		15064	19692	12251	12270	16593;16594	16593					0.12900674659567812
GSVITLGLLL	10	Unmodified	_GSVITLGLLL_					0	0	0			REV__nc|ENSG00000140675|P31639-2|SLC5A2	REV__nc|ENSG00000140675|P31639-2|SLC5A2	MULTI-MSMS	OvCa9_classI_Rep3	3	493.31756591796875	2	493.318243	984.621933	1.2328	0.00060816	-1.4512	-0.00071588	-0.21836	-0.00010772	493.3174202897749	124.35	2.0803	123.31	122.97	125.05	-1.0377					98	39	4	0	0	0	0.33376	1	9625	9625		76.774	4.8967	1	770890	+		15065	19692	12251	12270	16595	16595					0.12900674659567812
GSVITLGLLL	10	Unmodified	_GSVITLGLLL_					0	0	0			REV__nc|ENSG00000140675|P31639-2|SLC5A2	REV__nc|ENSG00000140675|P31639-2|SLC5A2	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.3189697265625	2	493.318243	984.621933	-1.0868	-0.00053615	1.0496	0.00051777	-0.037261	-1.8381E-05	493.3186384956746	124.71	1.8285	123.31	123.02	124.85	-1.3908					99	35	4	0	0	0	0.14489	2	11845	11833;11845		102.77	13.022	1	724180	+		15066	19692	12251	12270	16596;16597	16597					0.12900674659567812
GSVLPQDHPL	10	Unmodified	_GSVLPQDHPL_					0	0	0		PREX1|p.T970Vfs*46|1|0.08|ENSG00000124126|chr20:48650116-48650117|-/CATGGTGGTGATGCAGTGCTGGGTGTAC|frameshift_variant	PREX1|p.T970Vfs*46|1|0.08|ENSG00000124126|chr20:48650116-48650117|-/CATGGTGGTGATGCAGTGCTGGGTGTAC|frameshift_variant	PREX1|p.T970Vfs*46|1|0.08|ENSG00000124126|chr20:48650116-48650117|-/CATGGTGGTGATGCAGTGCTGGGTGTAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.7835083007812	2	531.782556	1061.55056	-0.8739	-0.00046473	-0.0088073	-4.6836E-06	-0.88271	-0.00046941	531.7824678459274	47.97	2.462	44.862	44.287	46.749	-3.1077					144	47	5	0	0	0	0.15262	1	2599	2599		101.6	5.5671	1	3227400			15067	15520	12252	12271	16598	16598					0.022245549548870258
GSVPPLEL	8	Unmodified	_GSVPPLEL_					0	0	0			REV__chr11:65348931-65351687|106|21.75|0.39|5.78|+|0|DPF2,None|1	REV__chr11:65348931-65351687|106|21.75|0.39|5.78|+|0|DPF2,None|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.7452087402344	2	406.231636	810.448719	0.58268	0.0002367	-1.2289	-0.00049923	-0.64624	-0.00026252	406.2309487173816	40.037	0.7798	40.037	39.84	40.619	0					21	16	2	0	0	0	0.028476	1	2471	2471		24.203	11.244	1	228100	+		15068	15866	12253	12272	16599	16599					0.03591308603131438
GSVVQFKI	8	Unmodified	_GSVVQFKI_					0	0	0		ENSG00000188612|ENST00000420826|SUMO2;nc|ENSG00000188612|P61956-2|SUMO2;ENSG00000184900|ENST00000332859|SUMO3;nc|ENSG00000184900|P55854-2|SUMO3;ENST00000511179.1_1_17:48313271-48313352:+|nuORF;ENST00000434672.1_1_6:108939344-108939434:-|nuORF;ENSG00000177688|ENST00000326669|SUMO4;ENST00000466861.1_1_21:46233737-46238015:-|nuORF	ENSG00000188612|ENST00000420826|SUMO2	ENSG00000188612|ENST00000420826|SUMO2	MULTI-MSMS	OvCa99_classI_Rep5	1	439.26190185546875	2	439.260728	876.506903	3.0756	0.001351	-0.61923	-0.000272	2.4564	0.001079	439.26034009592905	93.82	0.50428	93.82	93.632	94.136	0					19	11	2	0	0	0	0.37357	1	10201	10201		93.195	21.318	1	996850			15069	8484	12254	12273	16600	16600					0.06370990248422004
GSWDGTLRL	9	Unmodified	_GSWDGTLRL_					0	0	0		ENSG00000204628|ENST00000512805|RACK1;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000513060.5_1_5:180669121-180670896:-|nuORF	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-MSMS	OvCa99_classI_Rep5	1	502.7628479003906	2	502.761623	1003.50869	0.24025	0.00012079	1.7283	0.00086892	1.9685	0.00098971	502.76237733490757	101.85	1.0638	101.85	101.53	102.59	0					66	24	4	0	0	0	0.019133	3	11338	11318;11338;11364		148.04	45.27	1	7053500			15070	9013	12255	12274	16601;16602;16603	16602					0.0070799926638756006
GSWVVETLV	9	Unmodified	_GSWVVETLV_					0	0	0		ENST00000503445.5_1_5:112196986-112217695:+|nuORF	ENST00000503445.5_1_5:112196986-112217695:+|nuORF	ENST00000503445.5_1_5:112196986-112217695:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.7533874511719	2	495.26875	988.522947	-0.68735	-0.00034042	-3.8227	-0.0018933	-4.51	-0.0022337	495.26671343066647	70.945	0.76945	67.489	67.155	67.924	-3.4563					39	15	3	0	0	0	0.027456	1	5423	5423		57.811	13.694	1	446090			15071	12861	12256	12275	16604	16604					0.02822651694657452
GSYAKVLLV	9	Unmodified	_GSYAKVLLV_					0	0	0		nc|ENSG00000067606|Q05513-2|PRKCZ;ENST00000479263.5_1_1:2075906-2116445:+|nuORF;nc|ENSG00000067606|Q05513-3|PRKCZ;ENSG00000067606|ENST00000378567|PRKCZ;ENST00000493761.1_1_3:169998074-169999052:+|nuORF;ENST00000503672.1_1_1:2077474-2087532:+|nuORF;PRKCZ|p.V282Dfs*9|1|0.12|ENSG00000067606|chr1:2150946-2150947|-/A|frameshift_variant;PRKCZ-SKI|1|fusion;PRKCZ-SKI|3|fusion;PRKCZ-SKI|2|fusion;ENSG00000163558|ENST00000295797|PRKCI	nc|ENSG00000067606|Q05513-2|PRKCZ;ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	MULTI-MSMS	OvCa9_classI_Rep2	2	475.28912353515625	2	475.289485	948.564418	-0.10021	-4.7628E-05	-0.093334	-4.436E-05	-0.19354	-9.1989E-05	475.2893194844011	95.83	1.6809	94.802	94.466	96.147	-1.0281					85	33	4	0	0	0	0.13504	5	8632	8621;8632;8639;8646;8652		87.696	28.914	1	682860			15072	6326;1378	12257	12276	16605;16606;16607;16608;16609	16606					0.08807832454010622
GSYAKVLLV	9	Unmodified	_GSYAKVLLV_					0	0	0		nc|ENSG00000067606|Q05513-2|PRKCZ;ENST00000479263.5_1_1:2075906-2116445:+|nuORF;nc|ENSG00000067606|Q05513-3|PRKCZ;ENSG00000067606|ENST00000378567|PRKCZ;ENST00000493761.1_1_3:169998074-169999052:+|nuORF;ENST00000503672.1_1_1:2077474-2087532:+|nuORF;PRKCZ|p.V282Dfs*9|1|0.12|ENSG00000067606|chr1:2150946-2150947|-/A|frameshift_variant;PRKCZ-SKI|1|fusion;PRKCZ-SKI|3|fusion;PRKCZ-SKI|2|fusion;ENSG00000163558|ENST00000295797|PRKCI	nc|ENSG00000067606|Q05513-2|PRKCZ;ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	MULTI-MSMS	OvCa9_classI_Rep3	3	475.2902526855469	2	475.289485	948.564418	0.11408	5.4223E-05	-0.31457	-0.00014951	-0.20049	-9.5289E-05	475.2892422104888	96.735	1.571	94.906	94.571	96.142	-1.8286					87	30	4	0	0	0	0.13504	5	6372	6367;6372;6377;6383;6389		87.696	26.724	1	851960			15073	6326;1378	12257	12276	16610;16611;16612;16613;16614	16611					0.08807832454010622
GSYAKVLLV	9	Unmodified	_GSYAKVLLV_					0	0	0		nc|ENSG00000067606|Q05513-2|PRKCZ;ENST00000479263.5_1_1:2075906-2116445:+|nuORF;nc|ENSG00000067606|Q05513-3|PRKCZ;ENSG00000067606|ENST00000378567|PRKCZ;ENST00000493761.1_1_3:169998074-169999052:+|nuORF;ENST00000503672.1_1_1:2077474-2087532:+|nuORF;PRKCZ|p.V282Dfs*9|1|0.12|ENSG00000067606|chr1:2150946-2150947|-/A|frameshift_variant;PRKCZ-SKI|1|fusion;PRKCZ-SKI|3|fusion;PRKCZ-SKI|2|fusion;ENSG00000163558|ENST00000295797|PRKCI	nc|ENSG00000067606|Q05513-2|PRKCZ;ENSG00000163558|ENST00000295797|PRKCI	ENSG00000163558|ENST00000295797|PRKCI	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.29022216796875	2	475.289485	948.564418	1.349	0.00064118	-1.6559	-0.00078704	-0.30688	-0.00014586	475.2885760846297	97.366	1.7143	94.987	94.563	96.277	-2.3786					89	33	4	0	0	0	0.094616	5	8619	8609;8619;8631;8644;8658		98.629	29.843	1	801880			15074	6326;1378	12257	12276	16615;16616;16617;16618;16619	16616					0.08807832454010622
GSYNKVFLAK	10	Unmodified	_GSYNKVFLAK_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.8165893554688	2	563.816399	1125.61824	0.88112	0.00049679	-1.3565	-0.00076482	-0.47539	-0.00026803	563.8155336048286	62.864	1.4948	59.407	59.111	60.606	-3.4577					67	30	3	0	0	0	0.063542	1	4397	4397		124.08	41.33	1	619980			15075	1970	12258	12277	16620	16620					0.060460048857066795
GSYNKVFLAK	10	Unmodified	_GSYNKVFLAK_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MATCH	OvCa9_classI_Rep2	2		2	563.816399	1125.61824	-1.3412	-0.00075619	0.7617	0.00042946	-0.5795	-0.00032673	563.8167811912961	62.026	1.7945	59.266	58.777	60.571	-2.7593	-0.070216	0.0010914	NaN	124.08	82	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	229230			15076	1970	12258	12277							0.060460048857066795
GSYPLPLVHP	10	Unmodified	_GSYPLPLVHP_					0	0	0		ENST00000250113.11_1_17:7494887-7494995:-|nuORF	ENST00000250113.11_1_17:7494887-7494995:-|nuORF	ENST00000250113.11_1_17:7494887-7494995:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	540.297607421875	2	540.297842	1078.58113	-1.8908	-0.0010216	2.144	0.0011584	0.25319	0.0001368	540.2989536670705	38.535	2.9688	35.825	35.469	38.438	-2.7097					158	59	5	0	0	0	0.62668	1	1821	1821		38.806	4.6336	1	1380400			15077	9792	12259	12278	16621	16621					0.04498333339961391
GTAAAAAS	8	Unmodified	_GTAAAAAS_					0	0	0			REV__ENST00000541337.5_1_5:139422034-139422808:-|nuORF	REV__ENST00000541337.5_1_5:139422034-139422808:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	618.3223876953125	1	619.304581	618.297304	-0.37525	-0.00023239	-0.15904	-9.8495E-05	-0.53429	-0.00033089	619.3041338277721	47.264	0.34597	47.264	47.076	47.422	0					10	7	2	0	0	0	0.028476	1	3374	3374		13.775	9.7901	1	106620	+		15078	27367	12260	12279	16622	16622					-0.027112527047165713
GTAAKSITK	9	Unmodified	_GTAAKSITK_					0	0	0		ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	MULTI-MSMS	OvCa9_classI_Rep2	2	438.760986328125	2	438.761092	875.507631	2.5423	0.0011155	-2.4873	-0.0010913	0.055055	2.4156E-05	438.7599045960789	28.771	0.64997	26.062	25.856	26.506	-2.7097					24	13	3	0	0	0	0.59259	1	632	632		32.812	3.6629	1	52164			15079	4224	12261	12280	16623	16623					0.06489784897473783
GTAAKSITKK	10	Unmodified	_GTAAKSITKK_					0	0	0		ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	MULTI-MSMS	OvCa9_classI_Rep2	2	502.8082580566406	2	502.808574	1003.60259	2.5495	0.0012819	-2.6997	-0.0013574	-0.15015	-7.5497E-05	502.80707536973654	26.202	0.53641	23.493	23.343	23.88	-2.7097					18	11	2	0	0	0	0.49595	1	344	344		54.722	24.405	1	40133			15080	4224	12262	12281	16624	16624					0.10093718368671034
GTAKTRRPD	9	Unmodified	_GTAKTRRPD_					0	0	0		nc|ENSG00000112697|Q9NV96-2|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A	nc|ENSG00000112697|Q9NV96-2|TMEM30A	nc|ENSG00000112697|Q9NV96-2|TMEM30A	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.30743408203125	2	501.277972	1000.54139	0.45278	0.00022697	2.0921	0.0010487	2.5449	0.0012757	501.2786576773693	161.1	1.0069	161.1	160.66	161.66	0					36	19	4	0	0	0	0.027453	1	18916	18916		30.318	0	1	149580			15081	2920	12263	12282	16625	16625					0.04114206389215269
GTALRKRNI	9	Unmodified	_GTALRKRNI_					0	0	0		ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.3108520507812	2	514.819807	1027.62506	0.12927	6.6552E-05	2.3956	0.0012333	2.5248	0.0012998	514.8210077875988	99.422	0.96691	97.737	97.423	98.39	-1.685					45	18	4	0	0	0	0.027462	1	6668	6668		26.693	10.22	1	191960			15082	7808	12264	12283	16626	16626					0.1123536255693125
GTALRKRNI	9	Unmodified	_GTALRKRNI_					0	0	0		ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	514.819807	1027.62506	3.53	0.0018173	2.145	0.0011043	5.6751	0.0029216	514.8207565482084	97.654	0.2168	97.654	97.479	97.696	0	-0.023954	-0.00072612	NaN	31.53	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70889			15083	7808	12264	12283							0.1123536255693125
GTARRGPR	8	Unmodified	_GTARRGPR_					0	0	0			REV__ENST00000555817.1_1_14:24780240-24780611:-|nuORF	REV__ENST00000555817.1_1_14:24780240-24780611:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	435.75372314453125	2	435.754467	869.494381	1.7762	0.00077399	-3.6579	-0.0015939	-1.8817	-0.00081994	435.7526535472148	83.363	0.59358	83.363	83.12	83.714	0					32	13	3	0	0	0	0.75426	1	8677	8677		18.324	0.95945	1	899120	+		15084	27549	12265	12284	16627	16627					0.054413916287558095
GTATVLVTL	9	Unmodified	_GTATVLVTL_					0	0	0		nc|ENSG00000179776|P33151-2|CDH5;ENSG00000179776|ENST00000341529|CDH5	nc|ENSG00000179776|P33151-2|CDH5	nc|ENSG00000179776|P33151-2|CDH5	MULTI-MSMS	OvCa99_classI_Rep5	1	437.7677307128906	2	437.765843	873.517133	3.4255	0.0014996	-0.60275	-0.00026387	2.8228	0.0012357	437.7654542157537	106.34	0.83487	106.34	106.05	106.89	0					50	18	4	0	0	0	0.14998	2	11975	11954;11975		84.916	21.609	1	2280100			15085	7841	12266	12285	16628;16629	16629					0.0753155318300287
GTDRLEFTFAF	11	Unmodified	_GTDRLEFTFAF_					0	0	0			REV__nc|ENSG00000128510|Q9UI42-2|CPA4	REV__nc|ENSG00000128510|Q9UI42-2|CPA4	MULTI-SECPEP	OvCa99_classI_Rep5	1	435.2271728515625	3	435.215427	1302.62445	3.1427	0.0013677	-2.928	-0.0012743	0.2147	9.3442E-05	435.21414529113315	87.815	0.54411	87.815	87.586	88.13	0					27	12	3	0	0	0	0.025772	1	9324	9324		39.873	12.229	1	788520	+		15086	18854	12267	12286	16630	16630					-0.014755216734556598
GTEACSGPGS	10	Unmodified	_GTEACSGPGS_					0	0	0		ENST00000264560.11_1_19:747183-747363:+|nuORF	ENST00000264560.11_1_19:747183-747363:+|nuORF	ENST00000264560.11_1_19:747183-747363:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1719665527344	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.66721	2	1633	1593;1633		34.173	1.0262	1	60065			15087	9933	12268	12287	16631;16632	16632					-0.10924467452775843
GTEKVTSLTIN	11	Unmodified	_GTEKVTSLTIN_					0	0	0		ENST00000472429.1_1_21:30971125-31311818:-|nuORF	ENST00000472429.1_1_21:30971125-31311818:-|nuORF	ENST00000472429.1_1_21:30971125-31311818:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	581.8217163085938	2	581.819335	1161.62412	1.4281	0.00083087	1.7219	0.0010018	3.1499	0.0018327	581.820406598656	137.16	1.0973	135.62	135.27	136.37	-1.5437					52	22	3	0	0	0	0.41656	1	13338	13338		59.931	10.395	1	91028			15088	12394	12269	12288	16633	16633					0.049770586067324984
GTFAVIVAVVN	11	Unmodified	_GTFAVIVAVVN_					0	0	0			REV__nc|ENSG00000157087|Q01814-4|ATP2B2;REV__nc|ENSG00000058668|P23634-5|ATP2B4;REV__nc|ENSG00000067842|Q16720-8|ATP2B3	REV__nc|ENSG00000058668|P23634-5|ATP2B4	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3161010742188	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.71191	1	14229	14229		25.574	1.3713	1	202430	+		15089	20511;16729;16842	12270	12289	16634	16634					0.08222889028479585
GTFGGLGSK	9	Unmodified	_GTFGGLGSK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep4_	4	412.2200622558594	2	412.21906	822.423567	0.71912	0.00029643	-0.50953	-0.00021004	0.20959	8.6397E-05	412.2187505841904	59.416	1.7776	56.024	55.705	57.482	-3.392					82	35	4	0	0	0	0.070405	4	3967	3957;3967;3980;3994		107.01	26.724	1	1383000			15090	3687	12271	12290	16635;16636;16637;16638	16636					0.00525253800583414
GTFGGLGSK	9	Unmodified	_GTFGGLGSK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MATCH	OvCa9_classI_Rep2	2		2	412.21906	822.423567	0.51335	0.00021161	-0.21136	-8.7127E-05	0.30199	0.00012448	412.2188856614029	59.048	1.439	56.268	55.789	57.228	-2.7801	0.12194	0.0001112	NaN	107.01	46	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	266420			15091	3687	12271	12290							0.00525253800583414
GTGACSTKETI	11	Carbamidomethyl (C)	_GTGAC(Carbamidomethyl (C))STKETI_	GTGAC(1)STKETI		GTGAC(52)STKETI		0	1	0		tr|A0A7D6W1Q0|A0A7D6W1Q0_9CLOT4-hydroxy-tetrahydrodipicolinatesynthaseOS=ClostridiumintestinaleOX=36845GN=dapAPE=3SV=1	tr|A0A7D6W1Q0|A0A7D6W1Q0_9CLOT4-hydroxy-tetrahydrodipicolinatesynthaseOS=ClostridiumintestinaleOX=36845GN=dapAPE=3SV=1	tr|A0A7D6W1Q0|A0A7D6W1Q0_9CLOT4-hydroxy-tetrahydrodipicolinatesynthaseOS=ClostridiumintestinaleOX=36845GN=dapAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	562.765380859375	2	562.766245	1123.51794	0.06028	3.3923E-05	-0.14195	-7.9886E-05	-0.081673	-4.5963E-05	562.7660370416633	41.626	6.1897	41.626	40.795	46.985	0					363	141	3	0	0	0	0.52474	1	2923	2923		51.528	7.1506	1	1452500			15092	35414	12272	12291	16639	16639	388				-0.03888020230260736
GTGASGSFK	9	Unmodified	_GTGASGSFK_					0	0	0		ENSG00000168298|ENST00000304218|H1-4;ENSG00000187475|ENST00000338379|H1-6;ENSG00000124610|ENST00000244573|H1-1;ENSG00000184357|ENST00000331442|H1-5;ENSG00000187837|ENST00000343677|H1-2;ENSG00000124575|ENST00000244534|H1-3	ENSG00000168298|ENST00000304218|H1-4;ENSG00000184357|ENST00000331442|H1-5;ENSG00000187837|ENST00000343677|H1-2;ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MULTI-MSMS	OvCa9_classI_Rep2	2	406.2007751464844	2	406.200867	810.387182	-0.66796	-0.00027133	1.0502	0.00042658	0.38222	0.00015526	406.2011642510314	35.043	0.94359	32.333	32.158	33.102	-2.7097					43	18	3	0	0	0	0.1944	4	1391	1387;1391;1399;1405		77.318	20.597	1	149610			15093	3662;6889;8438;8149	12273	12292	16640;16641;16642;16643	16641					-0.025596230961355104
GTGDCAPQP	9	Unmodified	_GTGDCAPQP_					0	0	0		ENSG00000135912|ENST00000392102|TTLL4	ENSG00000135912|ENST00000392102|TTLL4	ENSG00000135912|ENST00000392102|TTLL4	MULTI-SECPEP	OvCa99_classI_Rep5	1	423.185546875	2	423.176535	844.338517	-0.16411	-6.9448E-05	-3.0501	-0.0012907	-3.2142	-0.0013602	423.174927671934	33.629	0.24513	33.629	33.483	33.728	0					5	4	2	0	0	0	0.027462	1	1547	1547		16.473	3.514	1	10726			15094	4426	12274	12293	16644	16644					-0.08987859727551495
GTGPRASEGW	10	Unmodified	_GTGPRASEGW_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B;nc|ENSG00000266714|Q96JP2-2|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.24273681640625	2	509.241055	1016.46756	-0.091502	-4.6596E-05	-1.0448	-0.00053207	-1.1363	-0.00057867	509.24024870249735	61.537	2.1867	58.08	57.216	59.403	-3.4577					77	44	2	0	0	0	0.60504	1	4265	4265		41.427	7.2541	1	1687200			15095	9529	12275	12294	16645	16645					-0.04001761773088219
GTGSCISTQL	10	Unmodified	_GTGSCISTQL_					0	0	0			REV__ENST00000588803.1_1_18:53665734-53665818:+|nuORF	REV__ENST00000588803.1_1_18:53665734-53665818:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	483.7315368652344	2	483.731674	965.448796	-0.72807	-0.00035219	-2.6129	-0.001264	-3.341	-0.0016161	483.730282667133	53.451	0.51974	53.451	53.172	53.692	0					30	11	3	0	0	0	0.49595	1	4248	4248		54.722	5.1863	1	1542800	+		15096	27895	12276	12295	16646	16646					-0.03531059459157859
GTGSCISTQL	10	Unmodified	_GTGSCISTQL_					0	0	0			REV__ENST00000588803.1_1_18:53665734-53665818:+|nuORF	REV__ENST00000588803.1_1_18:53665734-53665818:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	483.731674	965.448796	-0.72807	-0.00035219	-2.6129	-0.001264	-3.341	-0.0016161	483.730282667133	53.451	0.51974	53.451	53.172	53.692	0	-0.17034	0.00012042	NaN	54.722	30	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1542800	+		15097	27895	12276	12295							-0.03531059459157859
GTGSCISTQL	10	Unmodified	_GTGSCISTQL_					0	0	0			REV__ENST00000588803.1_1_18:53665734-53665818:+|nuORF	REV__ENST00000588803.1_1_18:53665734-53665818:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	483.731674	965.448796	0.061791	2.989E-05	-3.0953	-0.0014973	-3.0335	-0.0014674	483.7300486282314	57.136	0.76395	53.791	53.527	54.291	-3.3449	0.17034	-0.00034622	NaN	54.722	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44482	+		15098	27895	12276	12295							-0.03531059459157859
GTHCNQVEVI	10	Unmodified	_GTHCNQVEVI_					0	0	0		ENSG00000163736|ENST00000296028|PPBP	ENSG00000163736|ENST00000296028|PPBP	ENSG00000163736|ENST00000296028|PPBP	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7518310546875	2	550.263673	1098.51279	-0.53289	-0.00029323	-0.16588	-9.1277E-05	-0.69877	-0.00038451	550.2631963656739	103.53	0.54957	103.53	103.22	103.77	0					29	12	3	0	0	0	0.026782	1	11552	11552		54.776	12.38	1	640670			15099	6355	12277	12296	16647	16647					-0.032522793022280894
GTHIRYHESLH	11	Unmodified	_GTHIRYHESLH_					0	0	0			REV__nc|ENSG00000186446|Q96CX3-2|ZNF501	REV__nc|ENSG00000186446|Q96CX3-2|ZNF501	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.91546630859375	3	450.56182	1348.66363	0.76091	0.00034284	-3.6275	-0.0016344	-2.8666	-0.0012916	450.5602112995423	38.833	0.54549	35.906	35.7	36.246	-2.9264					16	10	2	0	0	0	0.025995	1	1571	1571		29.551	9.5203	1	18439	+		15100	22585	12278	12297	16648	16648					0.0032462340079746355
GTHTMQHSI	9	Unmodified	_GTHTMQHSI_					0	0	0			REV__ENSG00000198040|ENST00000539354|ZNF84	REV__ENSG00000198040|ENST00000539354|ZNF84	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.7723083496094	2	506.237458	1010.46036	-0.56106	-0.00028403	-0.041876	-2.1199E-05	-0.60294	-0.00030523	506.23725076614113	33.593	0.82444	33.593	33.384	34.209	0					21	16	2	0	0	0	0.027461	1	1534	1534		40.778	3.6191	1	13265	+		15101	22981	12279	12298	16649	16649					-0.044448176451851396
GTHTRLQGR	9	Unmodified	_GTHTRLQGR_					0	0	0			REV__ZNF57|p.H410Q|1|0.37|ENSG00000171970|chr19:2917851-2917851|T/G|missense_variant	REV__ZNF57|p.H410Q|1|0.37|ENSG00000171970|chr19:2917851-2917851|T/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.3140869140625	2	513.283589	1024.55262	-1.2239	-0.00062819	-2.4748	-0.0012703	-3.6987	-0.0018985	513.282147355525	34.563	0.51256	34.563	34.351	34.864	0					20	10	3	0	0	0	0.027462	1	1668	1668		39.253	20.928	1	102210	+		15102	32775	12280	12299	16650	16650					0.04133028483374801
GTILTSFNKVS	11	Unmodified	_GTILTSFNKVS_					0	0	0		tr|A0A553SSF7|A0A553SSF7_NIACIHADfamilyphosphataseOS=NialliacirculansOX=1397GN=CEQ21_02890PE=4SV=1	tr|A0A553SSF7|A0A553SSF7_NIACIHADfamilyphosphataseOS=NialliacirculansOX=1397GN=CEQ21_02890PE=4SV=1	tr|A0A553SSF7|A0A553SSF7_NIACIHADfamilyphosphataseOS=NialliacirculansOX=1397GN=CEQ21_02890PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	583.8238525390625	2	583.824421	1165.63429	-0.17595	-0.00010273	-0.13861	-8.0926E-05	-0.31457	-0.00018365	583.8242751435387	106.81	1.1772	106.5	106.23	107.4	-0.30836					69	23	4	0	0	0	0.52842	1	9958	9958		51.193	1.6567	1	455720			15103	34372	12281	12300	16651	16651					0.0580966633197022
GTINVARALS	10	Unmodified	_GTINVARALS_					0	0	0			REV__nc|ENSG00000293451|Q8IZJ6|TDH	REV__nc|ENSG00000293451|Q8IZJ6|TDH	MULTI-MSMS	OvCa9_classI_Rep2	2	501.290771484375	2	501.290548	1000.56654	-0.80197	-0.00040202	0.50048	0.00025089	-0.30149	-0.00015113	501.2906816095173	135.63	4.8104	135.4	133.71	138.52	-0.22697					221	98	3	0	0	0	0.65849	1	13477	13477		35.152	3.6222	1	70595	+		15104	29224	12282	12301	16652	16652					0.06628261191792717
GTKIFDTLVHN	11	Unmodified	_GTKIFDTLVHN_					0	0	0			REV__ENSG00000185875|ENST00000376356|THNSL1	REV__ENSG00000185875|ENST00000376356|THNSL1	MSMS	OvCa9_classI_Rep4_	4	622.8361206054688	2	622.83532	1243.65609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.046	1	18.707	18.207	19.207	-1.3386								0	0	0	0.19388	1	6	6		35.152	0.97948	1		+		15105	22539	12283	12302	16653	16653					0.04400471080521129
GTKLPGLLK	9	Unmodified	_GTKLPGLLK_					0	0	0		nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000466416.1_1_3:183903995-183905333:+|nuORF;ENST00000498136.5_1_3:183903995-183905550:+|nuORF;ENST00000478288.5_1_3:183903968-183905333:+|nuORF	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	MULTI-MSMS	OvCa9_classI_Rep2	2	463.80548095703125	2	463.805303	925.596052	-0.65055	-0.00030173	0.52362	0.00024286	-0.12693	-5.8872E-05	463.80540716889675	69.215	1.4488	66.594	66.266	67.715	-2.6203					67	28	4	0	0	0	0.2422	3	5485	5485;5491;5497		69.628	3.6845	1	411020			15106	6124	12284	12303	16654;16655;16656	16654					0.1302782520793926
GTKLPGLLK	9	Unmodified	_GTKLPGLLK_					0	0	0		nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000466416.1_1_3:183903995-183905333:+|nuORF;ENST00000498136.5_1_3:183903995-183905550:+|nuORF;ENST00000478288.5_1_3:183903968-183905333:+|nuORF	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	463.805303	925.596052	0.49345	0.00022887	-0.45791	-0.00021238	0.035544	1.6486E-05	463.80485962073595	69.565	1.1935	66.751	66.462	67.655	-2.8143	0.070807	-0.00082569	NaN	69.628	45	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86953			15107	6124	12284	12303							0.1302782520793926
GTKLPGLLK	9	Unmodified	_GTKLPGLLK_					0	0	0		nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000466416.1_1_3:183903995-183905333:+|nuORF;ENST00000498136.5_1_3:183903995-183905550:+|nuORF;ENST00000478288.5_1_3:183903968-183905333:+|nuORF	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	463.805303	925.596052	-1.0619	-0.00049253	0.96898	0.00044942	-0.092944	-4.3108E-05	463.8056191849043	70.177	1.6578	66.695	66.442	68.099	-3.4812	0.015077	0.00049791	NaN	69.628	75	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	388180			15108	6124	12284	12303							0.1302782520793926
GTKRGKVTP	9	Unmodified	_GTKRGKVTP_					0	0	0			REV__ENST00000506894.5_1_4:176622911-176923710:-|nuORF	REV__ENST00000506894.5_1_4:176622911-176923710:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.2867736816406	2	472.287808	942.561064	-2.429	-0.0011472	2.5145	0.0011876	0.085513	4.0387E-05	472.2888822731472	151.46	1.6275	150.03	149.41	151.04	-1.4344					87	36	4	0	0	0	0.69123	1	15018	15018		20.947	2.6225	1	477430	+		15109	26892	12285	12304	16657	16657					0.08748582400005489
GTLHVLTLTS	10	Unmodified	_GTLHVLTLTS_					0	0	0			REV__ENST00000352385.2_1_15:65676444-65676708:-|nuORF	REV__ENST00000352385.2_1_15:65676444-65676708:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	521.3009643554688	2	521.300581	1040.58661	-0.71731	-0.00037394	1.5301	0.00079764	0.81278	0.0004237	521.3013451951931	49.755	2.2298	46.995	46.325	48.555	-2.7603					109	44	4	0	0	0	0.66721	1	3178	3178		34.173	5.0025	1	840970	+		15110	24724	12286	12305	16658	16658					0.06794012131740601
GTLIFIEIGGF	11	Unmodified	_GTLIFIEIGGF_					0	0	0			REV__ENSG00000181927|ENST00000641760|OR4P4	REV__ENSG00000181927|ENST00000641760|OR4P4	MULTI-MSMS	OvCa9_classI_Rep2	2	583.8245239257812	2	583.826432	1165.63831	-0.17595	-0.00010273	-3.5838	-0.0020923	-3.7597	-0.002195	583.8242751435387	106.81	1.1772	106.5	106.23	107.4	-0.30836					69	23	4	0	0	0	0.2426	1	9947	9947		74.255	1.3758	1	455720	+		15111	22252	12287	12306	16659	16659					0.06211755825665932
GTLLIHSVLIT	11	Unmodified	_GTLLIHSVLIT_					0	0	0		ENSG00000173302|ENST00000309926|GPR148	ENSG00000173302|ENST00000309926|GPR148	ENSG00000173302|ENST00000309926|GPR148	MULTI-MSMS	OvCa9_classI_Rep2	2	583.8587036132812	2	583.860806	1165.70706	-4.259	-0.0024867	1.0102	0.0005898	-3.2489	-0.0018969	583.8612282732444	154.9	1.2136	154.67	154.34	155.56	-0.22696					82	33	4	0	0	0	0.72466	1	15760	15760		19.997	3.5236	1	148650			15112	7367	12288	12307	16660	16660					0.13083420125371958
GTLYRKGKFVL	11	Unmodified	_GTLYRKGKFVL_					0	0	0			REV__ENSG00000182197|ENST00000378204|EXT1	REV__ENSG00000182197|ENST00000378204|EXT1	MULTI-MSMS	OvCa9_classI_Rep3	3	427.92919921875	3	427.92744	1280.76049	1.7119	0.00073257	3.8354	0.0016413	5.5473	0.0023739	427.9290217090034	65.493	1.4717	62.547	62.198	63.67	-2.9459					92	28	4	0	0	0	0.72499	1	2690	2690		19.263	0	1	349590	+		15113	22268	12289	12308	16661	16661					0.13134217627884937
GTMTGMLYK	9	2 Oxidation (M)	_GTM(Oxidation (M))TGM(Oxidation (M))LYK_		GTM(1)TGM(1)LYK		GTM(90)TGM(90)LYK	0	0	2		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.239013671875	2	517.238278	1032.462	-0.38989	-0.00020166	-0.62905	-0.00032537	-1.0189	-0.00052703	517.2382419031586	47.362	3.6491	44.289	43.552	47.201	-3.0724					185	70	5	0	0	0	0.12515	5	2492	2483;2492;2517;2541;2579		90.37	27.064	1	1023700			15114	7757	12290	12309	16662;16663;16664;16665;16666	16663		232;233			-0.05292944671418809
GTMTGMLYK	9	2 Oxidation (M)	_GTM(Oxidation (M))TGM(Oxidation (M))LYK_					0	0	2		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	517.238278	1032.462	-0.34049	-0.00017611	2.2874	0.0011832	1.947	0.001007	517.2381904590678	47.238	3.2234	44.528	43.794	47.018	-2.7097	0.11945	0.0027041	NaN	90.37	122	64	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177200			15115	7757	12290	12309				232;233			-0.05292944671418809
GTMTGMLYK	9	Oxidation (M)	_GTM(Oxidation (M))TGMLYK_		GTM(1)TGMLYK		GTM(61)TGM(-61)LYK	0	0	1		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.2419128417969	2	509.240821	1016.46709	-0.24245	-0.00012346	-0.0044614	-2.2719E-06	-0.24691	-0.00012574	509.24073295124657	59.072	0.99769	55.68	55.3	56.297	-3.392					55	19	3	0	0	0	0.074342	3	3927	3916;3927;3940		104.75	34.414	2	1179400			15116	7757	12290	12310	16667;16668;16669	16668		232;233			-0.04048640808809978
GTMTGMLYK	9	Oxidation (M)	_GTM(Oxidation (M))TGMLYK_					0	0	1		nc|ENSG00000204152|Q5SRD1-2|TIMM23B;ENSG00000204152|ENST00000651259|TIMM23B;ENSG00000178440|ENST00000651763|TIMM23B-AGAP6;ENSG00000265354|ENST00000580018|TIMM23	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	nc|ENSG00000204152|Q5SRD1-2|TIMM23B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	509.240821	1016.46709	-0.57492	-0.00029277	0.61327	0.0003123	0.038349	1.9529E-05	509.24092827744454	58.647	1.225	55.867	55.385	56.61	-2.7801	0.11346	0.00096105	NaN	104.75	73	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194410			15117	7757	12290	12310				232;233			-0.04048640808809978
GTNASRHHGR	10	Unmodified	_GTNASRHHGR_					0	0	0		ENST00000529958.1_1_11:6704370-6704496:-|nuORF	ENST00000529958.1_1_11:6704370-6704496:-|nuORF	ENST00000529958.1_1_11:6704370-6704496:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	546.8114624023438	2	546.773919	1091.53329	-0.42394	-0.0002318	-0.64315	-0.00035166	-1.0671	-0.00058346	546.7741603977626	77.334	0.57169	75.544	75.155	75.727	-1.7894					13	10	2	0	0	0	0.026606	1	6406	6406		62.107	23.301	1	38146			15118	13280	12291	12311	16670	16670					-0.008819278075179682
GTNFRVLLV	9	Unmodified	_GTNFRVLLV_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENST00000447818.2_1_X:79828255-79829731:-|nuORF;ENST00000494253.1_1_10:71098016-71144300:+|nuORF;ENSG00000160883|ENST00000292432|HK3;ENSG00000159399|ENST00000290573|HK2;nc|ENSG00000156510|Q2TB90-3|HKDC1;nc|ENSG00000156510|Q2TB90-2|HKDC1;ENSG00000156510|ENST00000354624|HKDC1	nc|ENSG00000156515|P19367-4|HK1;ENSG00000159399|ENST00000290573|HK2;nc|ENSG00000156510|Q2TB90-3|HKDC1	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8064270019531	2	509.805834	1017.59712	0.17054	8.6941E-05	-0.6687	-0.00034091	-0.49816	-0.00025397	509.80544933708404	111.24	1.4787	111.1	110.78	112.26	-0.13961					90	29	5	0	0	0	0.11471	8	10485	10485;10491;10497;10503;10509;10515;10530;10566		93.195	24.867	1	1582600			15119	6009;5846;5845	12292	12312	16671;16672;16673;16674;16675;16676;16677;16678	16671					0.08902039576855714
GTNFRVLLV	9	Unmodified	_GTNFRVLLV_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENST00000447818.2_1_X:79828255-79829731:-|nuORF;ENST00000494253.1_1_10:71098016-71144300:+|nuORF;ENSG00000160883|ENST00000292432|HK3;ENSG00000159399|ENST00000290573|HK2;nc|ENSG00000156510|Q2TB90-3|HKDC1;nc|ENSG00000156510|Q2TB90-2|HKDC1;ENSG00000156510|ENST00000354624|HKDC1	nc|ENSG00000156515|P19367-4|HK1;ENSG00000159399|ENST00000290573|HK2;nc|ENSG00000156510|Q2TB90-3|HKDC1	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	OvCa9_classI_Rep3	3	509.8045959472656	2	509.805834	1017.59712	1.7031	0.00086826	-2.332	-0.0011889	-0.62886	-0.00032059	509.8046299729127	112.22	1.4743	111.12	110.75	112.22	-1.1038					89	29	4	0	0	0	0.025955	9	8201	8174;8176;8182;8188;8194;8201;8207;8213;8219		139.97	65.996	1	1564800			15120	6009;5846;5845	12292	12312	16679;16680;16681;16682;16683;16684;16685;16686;16687	16684					0.08902039576855714
GTNFRVLLV	9	Unmodified	_GTNFRVLLV_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENST00000447818.2_1_X:79828255-79829731:-|nuORF;ENST00000494253.1_1_10:71098016-71144300:+|nuORF;ENSG00000160883|ENST00000292432|HK3;ENSG00000159399|ENST00000290573|HK2;nc|ENSG00000156510|Q2TB90-3|HKDC1;nc|ENSG00000156510|Q2TB90-2|HKDC1;ENSG00000156510|ENST00000354624|HKDC1	nc|ENSG00000156515|P19367-4|HK1;ENSG00000159399|ENST00000290573|HK2;nc|ENSG00000156510|Q2TB90-3|HKDC1	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.8054504394531	2	509.805834	1017.59712	0.057438	2.9282E-05	-0.93178	-0.00047503	-0.87434	-0.00044574	509.80536418182953	112.63	1.3865	111.12	110.79	112.18	-1.5111					84	27	4	0	0	0	0.13504	4	10418	10398;10406;10418;10442		87.696	19.506	1	1928800			15121	6009;5846;5845	12292	12312	16688;16689;16690;16691	16690					0.08902039576855714
GTNFRVLLV	9	Unmodified	_GTNFRVLLV_					0	0	0		nc|ENSG00000156515|P19367-4|HK1;nc|ENSG00000156515|P19367-2|HK1;ENSG00000156515|ENST00000359426|HK1;nc|ENSG00000156515|P19367-3|HK1;ENST00000447818.2_1_X:79828255-79829731:-|nuORF;ENST00000494253.1_1_10:71098016-71144300:+|nuORF;ENSG00000160883|ENST00000292432|HK3;ENSG00000159399|ENST00000290573|HK2;nc|ENSG00000156510|Q2TB90-3|HKDC1;nc|ENSG00000156510|Q2TB90-2|HKDC1;ENSG00000156510|ENST00000354624|HKDC1	nc|ENSG00000156515|P19367-4|HK1;ENSG00000159399|ENST00000290573|HK2;nc|ENSG00000156510|Q2TB90-3|HKDC1	ENSG00000159399|ENST00000290573|HK2	MULTI-MATCH	OvCa99_classI_Rep5	1		2	509.805834	1017.59712	2.0454	0.0010428	-0.61694	-0.00031452	1.4285	0.00072825	509.80545311729577	110.88	0.39858	110.88	110.58	110.98	0	-0.17518	0.0007764	NaN	139.97	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	328290			15122	6009;5846;5845	12292	12312							0.08902039576855714
GTNVIVEKLK	10	Unmodified	_GTNVIVEKLK_					0	0	0		ENST00000528662.6_1_11:102584081-102593757:-|nuORF;ENSG00000118113|ENST00000236826|MMP8	ENST00000528662.6_1_11:102584081-102593757:-|nuORF	ENST00000528662.6_1_11:102584081-102593757:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	550.8345336914062	2	550.837331	1099.66011	-0.19421	-0.00010698	-1.8793	-0.0010352	-2.0735	-0.0011422	550.8368181135468	30.906	0.4869	30.906	30.731	31.218	0					27	9	4	0	0	0	0.38315	1	1228	1228		70.816	10.698	1	1116500			15123	3288	12293	12313	16692	16692					0.11426560574227551
GTPPKKRPRGT	11	Unmodified	_GTPPKKRPRGT_					0	0	0			REV__ENST00000472918.5_1_22:26902745-26908398:-|nuORF	REV__ENST00000472918.5_1_22:26902745-26908398:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8551635742188	2	597.856921	1193.69929	-3.1766	-0.0018991	2.2834	0.0013652	-0.89312	-0.00053396	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.65063	2	14908	14908;15026		40.058	8.5284	1	436470	+		15124	26320	12294	12314	16693;16694	16693					0.11018705648439209
GTPPKKRPRGT	11	Unmodified	_GTPPKKRPRGT_					0	0	0			REV__ENST00000472918.5_1_22:26902745-26908398:-|nuORF	REV__ENST00000472918.5_1_22:26902745-26908398:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8554077148438	2	597.856921	1193.69929	-2.7036	-0.0016164	1.7084	0.0010214	-0.99524	-0.00059501	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.68399	1	12599	12599		35.152	4.8343	1	591030	+		15125	26320	12294	12314	16695	16695					0.11018705648439209
GTRTQLLLL	9	Unmodified	_GTRTQLLLL_					0	0	0		ENST00000607957.1_1_7:123389284-123389566:+|nuORF	ENST00000607957.1_1_7:123389284-123389566:+|nuORF	ENST00000607957.1_1_7:123389284-123389566:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.8160095214844	2	507.818941	1013.62333	-0.93972	-0.00047721	1.4816	0.00075239	0.54189	0.00027518	507.819539319373	75.325	0.69627	72.915	72.631	73.327	-2.4106					22	13	2	0	0	0	0.027462	1	3773	3773		30.504	4.9296	1	33453			15126	14291	12295	12315	16696	16696					0.1170630874833023
GTSAVPPSEP	10	Unmodified	_GTSAVPPSEP_					0	0	0		ENST00000549584.5_1_14:105453158-105465563:+|nuORF;ENSG00000140104|ENST00000547315|CLBA1	ENST00000549584.5_1_14:105453158-105465563:+|nuORF	ENST00000549584.5_1_14:105453158-105465563:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.3116149902344	2	471.232364	940.450176	-0.039352	-1.8544E-05	0.23086	0.00010879	0.19151	9.0247E-05	471.23232022324623	52.409	0.83239	52.409	52.083	52.915	0					40	18	3	0	0	0	0.026802	1	4097	4097		42.396	8.2236	1	2263800			15127	4822	12296	12316	16697	16697					-0.02243102098759664
GTSHLPKLRL	10	Unmodified	_GTSHLPKLRL_					0	0	0		HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|241|1|anti-sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|241|1|anti-sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|241|1|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	561.3444213867188	2	561.343115	1120.67168	0.97365	0.00054655	-1.5421	-0.00086562	-0.5684	-0.00031907	561.3421224939409	66.797	0.68381	66.797	66.412	67.096	0					46	16	4	0	0	0	0.41408	1	6193	6193		66.429	9.7082	1	2460400			15128	14401	12297	12317	16698	16698					0.11616802388221004
GTSIPYNLQL	10	Unmodified	_GTSIPYNLQL_					0	0	0			REV__ENST00000328709.7_1_2:99216873-99216927:-|nuORF	REV__ENST00000328709.7_1_2:99216873-99216927:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	553.2976684570312	2	553.298039	1104.58152	0.94178	0.00052108	-0.79423	-0.00043945	0.14754	8.1636E-05	553.297469368567	123.2	0.93163	122.16	121.89	122.82	-1.0377					42	17	4	0	0	0	0.34811	1	9510	9510		75.043	2.1641	1	159500	+		15129	24512	12298	12318	16699	16699					0.033417082691585165
GTSIPYNLQL	10	Unmodified	_GTSIPYNLQL_					0	0	0			REV__ENST00000328709.7_1_2:99216873-99216927:-|nuORF	REV__ENST00000328709.7_1_2:99216873-99216927:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.296875	2	553.298039	1104.58152	-0.058927	-3.2604E-05	-0.059301	-3.2811E-05	-0.11823	-6.5415E-05	553.2978150854092	123.58	0.98997	122.21	121.9	122.89	-1.3666					47	19	4	0	0	0	0.53807	1	11700	11700		49.536	1.5765	1	186630	+		15130	24512	12298	12318	16700	16700					0.033417082691585165
GTSLETKTPR	10	Unmodified	_GTSLETKTPR_					0	0	0		ENSG00000140534|ENST00000268138|TICRR;nc|ENSG00000140534|Q7Z2Z1-2|TICRR;TICRR|p.E1184K|1|0.12|ENSG00000140534|chr15:89623860-89623860|G/A|missense_variant	ENSG00000140534|ENST00000268138|TICRR	ENSG00000140534|ENST00000268138|TICRR	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.324462890625	2	545.29857	1088.58259	2.4946	0.0013603	-4.0023	-0.0021825	-1.5077	-0.00082214	545.296173837699	75.584	0.94919	75.584	75.209	76.158	0					35	23	2	0	0	0	0.026551	1	7536	7536		51.193	5.2204	1	1231600			15131	4857	12299	12319	16701	16701					0.04183922638026161
GTSLETKTPR	10	Unmodified	_GTSLETKTPR_					0	0	0		ENSG00000140534|ENST00000268138|TICRR;nc|ENSG00000140534|Q7Z2Z1-2|TICRR;TICRR|p.E1184K|1|0.12|ENSG00000140534|chr15:89623860-89623860|G/A|missense_variant	ENSG00000140534|ENST00000268138|TICRR	ENSG00000140534|ENST00000268138|TICRR	MULTI-MATCH	OvCa9_classI_Rep3	3		2	545.29857	1088.58259	-0.90175	-0.00049172	2.4397	0.0013303	1.5379	0.00083862	545.2987220239887	77.789	0.8468	75.436	75.151	75.998	-2.3527	-0.22987	0.0017014	NaN	51.193	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134930			15132	4857	12299	12319							0.04183922638026161
GTSVARADLQ	10	Unmodified	_GTSVARADLQ_					0	0	0		tr|A0A7D6VX51|A0A7D6VX51_9CLOTC40familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06950PE=3SV=1	tr|A0A7D6VX51|A0A7D6VX51_9CLOTC40familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06950PE=3SV=1	tr|A0A7D6VX51|A0A7D6VX51_9CLOTC40familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06950PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.2421875	2	509.269813	1016.52507	-0.11463	-5.8377E-05	-0.46475	-0.00023668	-0.57938	-0.00029506	509.2696230967198	61.725	0.46513	58.268	58.01	58.475	-3.4577					16	9	2	0	0	0	0.027363	1	4246	4246		75.043	16.813	1	84942			15133	35268	12300	12320	16702	16702					0.017470804324716482
GTSVARADLQ	10	Unmodified	_GTSVARADLQ_					0	0	0		tr|A0A7D6VX51|A0A7D6VX51_9CLOTC40familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06950PE=3SV=1	tr|A0A7D6VX51|A0A7D6VX51_9CLOTC40familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06950PE=3SV=1	tr|A0A7D6VX51|A0A7D6VX51_9CLOTC40familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06950PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	509.269813	1016.52507	-1.3131	-0.00066873	1.1318	0.00057639	-0.18132	-9.2338E-05	509.2706049712012	61.163	0.25985	58.404	58.308	58.568	-2.7593	0.068103	0.0012224	NaN	75.043	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14033			15134	35268	12300	12320							0.017470804324716482
GTSVLPAEELL	11	Unmodified	_GTSVLPAEELL_					0	0	0		ENSG00000158792|ENST00000289805|SPATA2L	ENSG00000158792|ENST00000289805|SPATA2L	ENSG00000158792|ENST00000289805|SPATA2L	MULTI-MSMS	OvCa99_classI_Rep5	1	564.81201171875	2	564.810979	1127.6074	1.5116	0.00085375	-2.5265	-0.001427	-1.015	-0.00057328	564.8094698875842	150.18	1.7096	150.18	149.79	151.5	0					106	33	6	0	0	0	0.69455	1	17606	17606		31.53	2.3598	1	1051000			15135	5973	12301	12321	16703	16703					0.048705577207556416
GTTITVSSRI	10	Unmodified	_GTTITVSSRI_					0	0	0			REV__ENST00000370944.8_1_1:70819901-70819997:-|nuORF	REV__ENST00000370944.8_1_1:70819901-70819997:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.325927734375	2	517.795663	1033.57677	-1.0468	-0.00054201	4.2138	0.0021819	3.1671	0.0016399	517.7977818734097	71.109	0.1955	67.653	67.58	67.776	-3.4563					5	3	2	0	0	0	0.026653	1	5397	5397		58.23	0	1	17343	+		15136	24971	12302	12322	16704	16704					0.06132824126370906
GTVRIWDYTQ	10	Unmodified	_GTVRIWDYTQ_					0	0	0		WDR17|p.L749Yfs*16|1|0.18|ENSG00000150627|chr4:176150167-176150167|T/-|frameshift_variant;ENSG00000150627|ENST00000508596|WDR17;nc|ENSG00000150627|Q8IZU2|WDR17	WDR17|p.L749Yfs*16|1|0.18|ENSG00000150627|chr4:176150167-176150167|T/-|frameshift_variant	WDR17|p.L749Yfs*16|1|0.18|ENSG00000150627|chr4:176150167-176150167|T/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	413.9201354980469	3	413.543655	1237.60914	0.11456	4.7377E-05	0.12361	5.1116E-05	0.23817	9.8493E-05	413.54347925898674	70.338	0.43904	70.338	70.089	70.528	0					25	10	3	0	0	0	0.026653	1	6704	6704		53.597	35.066	1	684460			15137	36304	12303	12323	16705	16705					-0.0001638847061258275
GTVRTRSSL	9	Unmodified	_GTVRTRSSL_					0	0	0		NISCH|p.L754Sfs*219|1|0.14|ENSG00000010322|chr3:52487751-52487751|C/-|frameshift_variant	NISCH|p.L754Sfs*219|1|0.14|ENSG00000010322|chr3:52487751-52487751|C/-|frameshift_variant	NISCH|p.L754Sfs*219|1|0.14|ENSG00000010322|chr3:52487751-52487751|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	488.7792053222656	2	488.780348	975.546142	0.11736	5.7361E-05	3.547	0.0017337	3.6644	0.0017911	488.78190409960365	46.177	0.83095	46.177	45.8	46.631	0					39	18	4	0	0	0	0.2422	1	3251	3251		69.628	0.8408	1	1089100			15138	15431	12304	12324	16706	16706					0.05739090531983493
GTYDAKVKK	9	Unmodified	_GTYDAKVKK_					0	0	0		ENSG00000159713|ENST00000393957|TPPP3	ENSG00000159713|ENST00000393957|TPPP3	ENSG00000159713|ENST00000393957|TPPP3	MULTI-MSMS	OvCa9_classI_Rep2	2	505.2872009277344	2	505.287474	1008.5604	0.38886	0.00019649	-0.6304	-0.00031853	-0.24154	-0.00012205	505.28705002705914	30.208	1.1833	27.498	27.31	28.494	-2.7097					60	23	4	0	0	0	0.083631	6	801	795;801;807;814;821;841		101.6	30.305	1	447770			15139	6025	12305	12325	16707;16708;16709;16710;16711;16712	16708					0.05645742960280131
GTYQPLSTR	9	Unmodified	_GTYQPLSTR_					0	0	0		ENST00000489905.1_1_6:33248421-33255161:-|nuORF;ENSG00000227057|ENST00000374617|WDR46	ENST00000489905.1_1_6:33248421-33255161:-|nuORF	ENST00000489905.1_1_6:33248421-33255161:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.7682800292969	2	511.766906	1021.51926	-0.1358	-6.9498E-05	-0.6359	-0.00032543	-0.7717	-0.00039493	511.76663653104475	57.61	1.4628	54.265	53.985	55.447	-3.3449					59	28	3	0	0	0	0.0097486	2	3751	3742;3751		169.65	58.004	1	1042200			15140	9275	12306	12326	16713;16714	16714					0.009359819207929831
GTYQPLSTR	9	Unmodified	_GTYQPLSTR_					0	0	0		ENST00000489905.1_1_6:33248421-33255161:-|nuORF;ENSG00000227057|ENST00000374617|WDR46	ENST00000489905.1_1_6:33248421-33255161:-|nuORF	ENST00000489905.1_1_6:33248421-33255161:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	511.766906	1021.51926	-0.66008	-0.00033781	0.20618	0.00010552	-0.45389	-0.00023229	511.7669290807932	57.251	1.1919	54.459	53.981	55.173	-2.792	0.096826	0.00038855	NaN	169.65	66	23	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176010			15141	9275	12306	12326							0.009359819207929831
GTYSKIMNH	9	Unmodified	_GTYSKIMNH_					0	0	0		ENSG00000067900|ENST00000399799|ROCK1	ENSG00000067900|ENST00000399799|ROCK1	ENSG00000067900|ENST00000399799|ROCK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.7570190429688	2	525.755484	1049.49641	-0.61346	-0.00032253	0.1792	9.4218E-05	-0.43426	-0.00022831	525.7554248226903	48.068	1.234	44.96	44.684	45.918	-3.1077					53	23	3	0	0	0	0.12515	1	2627	2627		90.37	21.583	1	378450			15142	1383	12307	12327	16715	16715					-0.026353604683208687
GTYVKPLSNK	10	Unmodified	_GTYVKPLSNK_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;ACOX1|p.L494Ffs*32|1|0.02|ENSG00000161533|chr17:75949597-75949598|-/TGGGCTCCCA|frameshift_variant;ENST00000589744.1_1_17:73949530-73951667:-|nuORF	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.813232421875	2	553.813856	1105.61316	-0.73692	-0.00040811	-0.12592	-6.9738E-05	-0.86284	-0.00047785	553.8139631498693	45.758	1.6659	42.719	42.075	43.741	-3.0385					85	31	4	0	0	0	0.55109	1	2363	2363		47.96	5.5634	1	338510			15143	6130	12308	12328	16716	16716					0.06457701023077789
GTYVKPLSNK	10	Unmodified	_GTYVKPLSNK_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;ACOX1|p.L494Ffs*32|1|0.02|ENSG00000161533|chr17:75949597-75949598|-/TGGGCTCCCA|frameshift_variant;ENST00000589744.1_1_17:73949530-73951667:-|nuORF	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	553.813856	1105.61316	0.59085	0.00032722	-1.4798	-0.00081954	-0.88896	-0.00049232	553.8132839255222	45.528	1.6456	42.818	41.901	43.547	-2.7097	0.049373	-0.00071121	NaN	47.96	65	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65465			15144	6130	12308	12328							0.06457701023077789
GTYVSSVPR	9	Unmodified	_GTYVSSVPR_					0	0	0		ENST00000485901.1_1_6:32974617-32975137:-|nuORF;ENSG00000204252|ENST00000229829|HLA-DOA	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	ENST00000485901.1_1_6:32974617-32975137:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	483.2577209472656	2	483.256174	964.497795	-0.26237	-0.00012679	-0.21114	-0.00010204	-0.47351	-0.00022883	483.2560560058089	58.437	1.9396	55.045	54.651	56.591	-3.392					104	38	4	0	0	0	0.043101	4	3847	3837;3847;3860;3877		124.08	49.564	1	2539400			15145	8961	12309	12329	16717;16718;16719;16720	16718					0.01412596892100737
GVADKILKK	9	Unmodified	_GVADKILKK_					0	0	0		ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	MULTI-MSMS	OvCa9_classI_Rep2	2	486.3160095214844	2	486.316035	970.617516	-1.0603	-0.00051562	0.87069	0.00042343	-0.18957	-9.2189E-05	486.31628594803936	50.625	1.6844	47.831	47.43	49.115	-2.794					77	33	4	0	0	0	0.070405	4	3271	3265;3271;3276;3286		107.01	16.638	1	433010			15146	3609	12310	12330	16721;16722;16723;16724	16722					0.13103210236658924
GVADKILKK	9	Unmodified	_GVADKILKK_					0	0	0		ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	ENSG00000123609|ENST00000243346|NMI	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.3147277832031	2	486.316035	970.617516	-0.80421	-0.0003911	0.072515	3.5265E-05	-0.7317	-0.00035584	486.31601345506743	50.935	1.8673	47.761	47.516	49.384	-3.1734					86	36	4	0	0	0	0.14855	3	2967	2955;2967;2992		85.161	5.4482	1	1315100			15147	3609	12310	12330	16725;16726;16727	16726					0.13103210236658924
GVAEDHHPPQ	10	Unmodified	_GVAEDHHPPQ_					0	0	0		ENST00000246174.6_2_X:101856417-101857057:+|nuORF	ENST00000246174.6_2_X:101856417-101857057:+|nuORF	ENST00000246174.6_2_X:101856417-101857057:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	543.794189453125	2	543.751787	1085.48902	-0.42646	-0.00023189	-2.6444	-0.0014379	-3.0708	-0.0016698	543.7505290030849	106.88	0.19807	106.58	106.47	106.67	-0.30836					5	3	2	0	0	0	0.026639	1	9969	9969		44.117	8.4985	1	6528.1			15148	9775	12311	12331	16728	16728					-0.050303767443892866
GVAEDPVTGTF	11	Unmodified	_GVAEDPVTGTF_					0	0	0		ENST00000277795.8_1_10:70048210-70048411:-|nuORF	ENST00000277795.8_1_10:70048210-70048411:-|nuORF	ENST00000277795.8_1_10:70048210-70048411:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.8236083984375	2	546.764029	1091.5135	0.98698	0.00053965	-3.5732	-0.0019537	-2.5862	-0.001414	546.7620536237193	85.74	0.68839	83.094	82.755	83.443	-2.6463					22	13	2	0	0	0	0.025239	1	7219	7219		40.778	5.1599	1	32333			15149	10033	12312	12332	16729	16729					-0.02859161381525155
GVAFSSIILM	10	Unmodified	_GVAFSSIILM_					0	0	0			REV__tr|A0A7D6ZZV7|A0A7D6ZZV7_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_07680PE=4SV=1	REV__tr|A0A7D6ZZV7|A0A7D6ZZV7_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_07680PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.3243408203125	2	519.288628	1036.5627	0.92703	0.0004814	3.1365	0.0016288	4.0636	0.0021102	519.2902574114345	69.59	0.49859	66.776	66.512	67.011	-2.8143					11	9	2	0	0	0	0.026519	1	3107	3107		76.847	15.875	1	10905	+		15150	32425	12313	12333	16730	16730					0.045884553737323586
GVAGIITKT	9	Unmodified	_GVAGIITKT_					0	0	0			REV__tr|A0A553SNW8|A0A553SNW8_NIACIZincmetalloproteaseOS=NialliacirculansOX=1397GN=rsePPE=3SV=1	REV__tr|A0A553SNW8|A0A553SNW8_NIACIZincmetalloproteaseOS=NialliacirculansOX=1397GN=rsePPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	429.7102966308594	2	430.26601	858.517468	-0.083394	-3.5882E-05	-1.1398	-0.00049042	-1.2232	-0.0005263	430.2654779579064	53.462	0.71494	50.254	49.944	50.659	-3.208					20	13	3	0	0	0	0.027462	1	3249	3249		6.7355	0	1	28434	+		15151	30467	12314	12334	16731	16731					0.08254972902852842
GVAHAATGLS	10	Unmodified	_GVAHAATGLS_					0	0	0			REV__tr|A0A7D7AB03|A0A7D7AB03_9CLOTLrgBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13380PE=4SV=1	REV__tr|A0A7D7AB03|A0A7D7AB03_9CLOTLrgBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13380PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	442.2351379394531	2	442.235242	882.45593	0.32938	0.00014566	-0.3863	-0.00017083	-0.056917	-2.5171E-05	442.2349881641812	53.455	1.2924	50.641	50.28	51.573	-2.8139					56	25	3	0	0	0	0.49049	1	3622	3622		55.504	0	1	308550	+		15152	32673	12315	12335	16732	16732					0.01000041203553792
GVAIVSKVP	9	Unmodified	_GVAIVSKVP_					0	0	0			REV__TMEM131|p.A664S|1|0.5|ENSG00000075568|chr2:97809753-97809753|C/A|missense_variant	REV__TMEM131|p.A664S|1|0.5|ENSG00000075568|chr2:97809753-97809753|C/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.28863525390625	2	435.276378	868.538203	1.8614	0.00081024	-0.30339	-0.00013206	1.558	0.00067818	435.2762768062788	85.232	0.63271	82.586	82.312	82.945	-2.6463					16	12	2	0	0	0	0.027441	1	7206	7206		52.299	45.564	1	20891	+		15153	29512	12316	12336	16733	16733					0.09867563282523406
GVAKNRELLAK	11	Unmodified	_GVAKNRELLAK_					0	0	0		ENSG00000255561|ENST00000260257|FDXACB1	ENSG00000255561|ENST00000260257|FDXACB1	ENSG00000255561|ENST00000260257|FDXACB1	MULTI-MSMS	OvCa99_classI_Rep5	1	400.24755859375	3	400.247062	1197.71936	0.61695	0.00024693	4.0383	0.0016163	4.6553	0.0018633	400.2485586897002	28.208	0.49768	28.208	28.041	28.539	0					11	9	2	0	0	0	0.71582	1	900	900		24.232	1.6522	1	127940			15154	9458	12317	12337	16734	16734					0.1284045658840114
GVALQQGK	8	Unmodified	_GVALQQGK_					0	0	0		ENST00000560168.1_1_19:46268761-46269535:-|nuORF;ENSG00000177045|ENST00000317578|SIX5	ENST00000560168.1_1_19:46268761-46269535:-|nuORF	ENST00000560168.1_1_19:46268761-46269535:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	400.2476501464844	2	400.734877	799.455202	0.93331	0.00037401	-3.9484	-0.0015823	-3.0151	-0.0012083	400.73262567601176	56.761	1.2889	53.958	53.622	54.911	-2.804					34	25	2	0	0	0	0.028476	1	3979	3979		28.254	0	1	39188			15155	7651	12318	12338	16735	16735					0.04745246554523419
GVALRAPSL	9	Unmodified	_GVALRAPSL_					0	0	0		ENST00000459982.5_1_5:131821868-131826375:-|nuORF;ENST00000493208.1_1_5:131825047-131826375:-|nuORF	ENST00000459982.5_1_5:131821868-131826375:-|nuORF	ENST00000459982.5_1_5:131821868-131826375:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	442.2735290527344	2	442.271627	882.528701	0.8477	0.00037491	-0.18168	-8.0354E-05	0.66602	0.00029456	442.27138752000326	73.121	0.59836	73.121	72.842	73.44	0					30	14	3	0	0	0	0.21395	1	7166	7166		73.975	5.49	1	1314700			15156	12143	12319	12339	16736	16736					0.08273794996978268
GVAPASRITRG	11	Unmodified	_GVAPASRITRG_					0	0	0			REV__nc|ENSG00000182938|Q7RTS5|OTOP3	REV__nc|ENSG00000182938|Q7RTS5|OTOP3	MULTI-MSMS	OvCa9_classI_Rep3	3	542.8165893554688	2	542.814722	1083.61489	0.89271	0.00048457	2.6384	0.0014322	3.5311	0.0019167	542.8160168304049	68.906	1.1984	66.092	65.762	66.961	-2.8144					67	23	4	0	0	0	0.50928	1	3045	3045		52.937	2.9122	1	289330	+		15157	29045	12320	12340	16737	16737					0.07642754831681486
GVAPASRITRG	11	Unmodified	_GVAPASRITRG_					0	0	0			REV__nc|ENSG00000182938|Q7RTS5|OTOP3	REV__nc|ENSG00000182938|Q7RTS5|OTOP3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.814722	1083.61489	-1.4283	-0.00077531	4.8778	0.0026478	3.4495	0.0018724	542.8175300982683	68.649	1.4401	66.028	65.425	66.865	-2.6203	-0.13131	0.0012515	NaN	52.937	114	28	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	382090	+		15158	29045	12320	12340							0.07642754831681486
GVAPASRITRG	11	Unmodified	_GVAPASRITRG_					0	0	0			REV__nc|ENSG00000182938|Q7RTS5|OTOP3	REV__nc|ENSG00000182938|Q7RTS5|OTOP3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	542.814722	1083.61489	-1.3433	-0.00072919	4.8539	0.0026348	3.5106	0.0019056	542.81727576973	69.84	1.2659	66.358	66.009	67.275	-3.4812	0.1988	0.0012256	NaN	52.937	65	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	465190	+		15159	29045	12320	12340							0.07642754831681486
GVAPFTIAR	9	Unmodified	_GVAPFTIAR_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;COL6A3|p.T1393Cfs*9|1|0.09|ENSG00000163359|chr2:237371828-237371840|GCTCCCGGAAGGT/-|frameshift_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa9_classI_Rep3	3	466.27264404296875	2	466.271627	930.528701	-1.0122	-0.00047197	0.75353	0.00035135	-0.2587	-0.00012062	466.2718496738201	86.977	1.6309	84.801	84.28	85.911	-2.1768					88	31	4	0	0	0	0.21231	2	5191	5191;5210		74.255	9.1707	1	745130			15160	6293	12321	12341	16738;16739	16738					0.06065794997005014
GVAPFTIAR	9	Unmodified	_GVAPFTIAR_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;COL6A3|p.T1393Cfs*9|1|0.09|ENSG00000163359|chr2:237371828-237371840|GCTCCCGGAAGGT/-|frameshift_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.2726745605469	2	466.271627	930.528701	-1.1469	-0.00053475	0.57157	0.0002665	-0.5753	-0.00026825	466.2717578803205	87.451	1.41	84.824	84.499	85.909	-2.6269					65	27	4	0	0	0	0.14998	2	7437	7424;7437		84.916	10.941	1	730510			15161	6293	12321	12341	16740;16741	16741					0.06065794997005014
GVAPFTIAR	9	Unmodified	_GVAPFTIAR_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;COL6A3|p.T1393Cfs*9|1|0.09|ENSG00000163359|chr2:237371828-237371840|GCTCCCGGAAGGT/-|frameshift_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	466.271627	930.528701	-0.3403	-0.00015867	0.15055	7.0199E-05	-0.18974	-8.8471E-05	466.2715436089127	86.352	1.7846	84.861	84.245	86.03	-1.4907	0.032603	-0.00028769	NaN	84.916	76	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	369670			15162	6293	12321	12341							0.06065794997005014
GVASGRLHL	9	Unmodified	_GVASGRLHL_					0	0	0		ENSG00000120451|ENST00000265909|SNX19;nc|ENSG00000120451|Q92543-2|SNX19	ENSG00000120451|ENST00000265909|SNX19	ENSG00000120451|ENST00000265909|SNX19	MULTI-MSMS	OvCa9_classI_Rep4_	4	455.26727294921875	2	455.266876	908.519199	0.51775	0.00023572	-1.3804	-0.00062844	-0.86264	-0.00039273	455.26608946364826	61.535	0.5201	58.077	57.816	58.336	-3.4577					24	10	3	0	0	0	0.51865	1	4229	4229		40.778	5.1599	1	302260			15163	3431	12322	12342	16742	16742					0.06128026711462553
GVASGRLHL	9	Unmodified	_GVASGRLHL_					0	0	0		ENSG00000120451|ENST00000265909|SNX19;nc|ENSG00000120451|Q92543-2|SNX19	ENSG00000120451|ENST00000265909|SNX19	ENSG00000120451|ENST00000265909|SNX19	MULTI-MATCH	OvCa9_classI_Rep2	2		2	455.266876	908.519199	0.39291	0.00017888	-2.037	-0.00092738	-1.6441	-0.0007485	455.26575769952694	60.757	1.3172	57.987	57.606	58.924	-2.7702	-0.045383	-0.00049325	NaN	40.778	47	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202690			15164	3431	12322	12342							0.06128026711462553
GVAVAAVTQAQ	11	Unmodified	_GVAVAAVTQAQ_					0	0	0			REV__ENSG00000162461|ENST00000294454|SLC25A34	REV__ENSG00000162461|ENST00000294454|SLC25A34	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7855529785156	2	507.782556	1013.55056	1.702	0.00086427	2.4391	0.0012385	4.1411	0.0021028	507.7837327408491	28.178	0.84576	25.468	25.294	26.14	-2.7097					29	17	2	0	0	0	0.69455	1	556	556		31.53	5.9558	1	91619	+		15165	20738	12323	12343	16743	16743					0.044325549548943854
GVAVDSNGNII	11	Unmodified	_GVAVDSNGNII_					0	0	0		ENSG00000109654|ENST00000338700|TRIM2;nc|ENSG00000109654|Q9C040|TRIM2;nc|ENSG00000110171|O75382-3|TRIM3;nc|ENSG00000110171|O75382-2|TRIM3;ENSG00000110171|ENST00000345851|TRIM3;nc|ENSG00000110171|O75382-4|TRIM3	ENSG00000109654|ENST00000338700|TRIM2;nc|ENSG00000110171|O75382-3|TRIM3	nc|ENSG00000110171|O75382-3|TRIM3	MULTI-MSMS	OvCa99_classI_Rep5	1	529.7750854492188	2	529.77747	1057.54039	0.78106	0.00041379	-1.431	-0.00075813	-0.64997	-0.00034434	529.776514060503	158.2	0.64218	158.2	158.01	158.65	0					26	13	2	0	0	0	0.70142	1	18531	18531		29.17	0.020503	1	102860			15166	2760;2721	12324	12344	16744	16744					0.013919472296720414
GVAYGLVAPL	10	Unmodified	_GVAYGLVAPL_					0	0	0		tr|A0A553SGA1|A0A553SGA1_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_10460PE=3SV=1	tr|A0A553SGA1|A0A553SGA1_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_10460PE=3SV=1	tr|A0A553SGA1|A0A553SGA1_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_10460PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	480.2796936035156	2	480.28166	958.548768	-1.1196	-0.00053771	-3.7894	-0.00182	-4.909	-0.0023577	480.27958333976056	63.914	0.72871	63.914	63.732	64.461	0					31	17	3	0	0	0	0.32406	1	5774	5774		77.944	2.9005	1	1937300			15167	33132	12325	12345	16745	16745					0.06783545936934843
GVAYGLVAPL	10	Unmodified	_GVAYGLVAPL_					0	0	0		tr|A0A553SGA1|A0A553SGA1_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_10460PE=3SV=1	tr|A0A553SGA1|A0A553SGA1_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_10460PE=3SV=1	tr|A0A553SGA1|A0A553SGA1_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_10460PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	480.28166	958.548768	0.032472	1.5596E-05	-4.4334	-0.0021293	-4.4009	-0.0021137	480.2792966187449	66.678	0.94371	63.982	63.517	64.461	-2.6958	0.034074	-0.00023154	NaN	77.944	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55735			15168	33132	12325	12345							0.06783545936934843
GVCLVAKLAH	10	Unmodified	_GVCLVAKLAH_					0	0	0			REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|238|1|anti-sense	REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|238|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.31219482421875	2	505.794412	1009.57427	0.43669	0.00022088	3.4075	0.0017235	3.8441	0.0019443	505.7959546666597	34.3	0.79969	31.512	31.299	32.099	-2.7881					27	15	2	0	0	0	0.026915	1	1034	1034		35.618	16.258	1	43418	+		15169	28203	12326	12346	16746	16746					0.06986697187721802
GVDDLQREFL	10	Unmodified	_GVDDLQREFL_					0	0	0		tr|A0A553SQ21|A0A553SQ21_NIACIcardiolipinsynthaseOS=NialliacirculansOX=1397GN=clsPE=4SV=1	tr|A0A553SQ21|A0A553SQ21_NIACIcardiolipinsynthaseOS=NialliacirculansOX=1397GN=clsPE=4SV=1	tr|A0A553SQ21|A0A553SQ21_NIACIcardiolipinsynthaseOS=NialliacirculansOX=1397GN=clsPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	596.308349609375	2	596.303852	1190.59315	0.12404	7.3968E-05	3.2368	0.0019301	3.3609	0.0020041	596.3052757852319	52.184	3.2932	48.976	48.288	51.581	-3.208					175	64	5	0	0	0	0.59317	1	3161	3161		42.864	6.4175	1	2307000			15170	34108	12327	12347	16747	16747					0.0054790529247839
GVDIVFRVSNS	11	Unmodified	_GVDIVFRVSNS_					0	0	0			REV__ENSG00000089876|ENST00000284690|DHX32	REV__ENSG00000089876|ENST00000284690|DHX32	MULTI-MSMS	OvCa9_classI_Rep2	2	596.8169555664062	2	596.81967	1191.62479	-1.5015	-0.00089611	-4.1369	-0.002469	-5.6384	-0.0033651	596.8171161474286	55.17	1.9389	52.356	51.772	53.711	-2.8139					100	38	4	0	0	0	0.63561	1	3846	3846		41.427	0.64845	1	332760	+		15171	17214	12328	12348	16748	16748					0.03663898046443137
GVDPQEGKVY	10	Unmodified	_GVDPQEGKVY_					0	0	0		LRP4|p.S1504Lfs*116|1|0.16|ENSG00000134569|chr11:46873172-46873172|G/-|frameshift_variant;ENSG00000134569|ENST00000378623|LRP4	LRP4|p.S1504Lfs*116|1|0.16|ENSG00000134569|chr11:46873172-46873172|G/-|frameshift_variant	LRP4|p.S1504Lfs*116|1|0.16|ENSG00000134569|chr11:46873172-46873172|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	546.8113403320312	2	546.272021	1090.52949	-0.76998	-0.00042062	2.5305	0.0013824	1.7606	0.00096174	546.2725703726381	78.45	0.85724	76.097	75.596	76.453	-2.3527					26	16	2	0	0	0	0.026553	1	4133	4133		47.657	0	1	48022			15172	14802	12329	12349	16749	16749					-0.012154551446201367
GVDSLSNFIE	10	Unmodified	_GVDSLSNFIE_					0	0	0		ENSG00000183808|ENST00000520560|RBM12B	ENSG00000183808|ENST00000520560|RBM12B	ENSG00000183808|ENST00000520560|RBM12B	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.346435546875	2	540.764029	1079.5135	-0.3935	-0.00021279	-0.76421	-0.00041326	-1.1577	-0.00062605	540.7636046229185	83.125	0.60104	80.829	80.431	81.032	-2.2963					14	11	2	0	0	0	0.026679	1	4691	4691		93.195	21.9	1	27503			15173	8109	12330	12350	16750	16750					-0.02307161381509104
GVDWLRITL	9	Unmodified	_GVDWLRITL_					0	0	0			REV__ENSG00000182752|ENST00000328252|PAPPA	REV__ENSG00000182752|ENST00000328252|PAPPA	MULTI-MSMS	OvCa9_classI_Rep2	2	536.8078002929688	2	536.811116	1071.60768	0.23953	0.00012858	-4.4717	-0.0024004	-4.2321	-0.0022719	536.808594253858	65.887	1.3438	63.191	62.771	64.114	-2.6958					79	26	4	0	0	0	0.46356	1	5098	5098		45.972	5.3996	1	1324500	+		15174	22315	12331	12351	16751	16751					0.07474022231258459
GVEASQLITI	10	Unmodified	_GVEASQLITI_					0	0	0			REV__ENSG00000186130|ENST00000373659|ZBTB6	REV__ENSG00000186130|ENST00000373659|ZBTB6	MULTI-MSMS	OvCa99_classI_Rep5	1	515.7932739257812	2	515.792589	1029.57063	-0.53156	-0.00027418	-2.7084	-0.001397	-3.2399	-0.0016711	515.7910337503631	33.459	0.39622	33.459	33.236	33.632	0					16	7	3	0	0	0	0.66721	1	1542	1542		34.173	0	1	219280	+		15175	22558	12332	12352	16752	16752					0.057023058948516336
GVEASQLITI	10	Unmodified	_GVEASQLITI_					0	0	0			REV__ENSG00000186130|ENST00000373659|ZBTB6	REV__ENSG00000186130|ENST00000373659|ZBTB6	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	515.792589	1029.57063	-0.53156	-0.00027418	-2.7084	-0.001397	-3.2399	-0.0016711	515.7910337503631	33.459	0.39622	33.459	33.236	33.632	0	0	0	NaN	34.173	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219280	+		15176	22558	12332	12352							0.057023058948516336
GVEEKPYPR	9	Unmodified	_GVEEKPYPR_					0	0	0			REV__ENSG00000184924|ENST00000328379|PTRHD1	REV__ENSG00000184924|ENST00000328379|PTRHD1	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.302734375	2	537.782556	1073.55056	-1.9498	-0.0010486	-1.86	-0.0010003	-3.8099	-0.0020489	537.781428743441	50.583	1.1404	47.789	47.43	48.571	-2.794					52	22	3	0	0	0	0.027462	1	3355	3355		34.173	0	1	216390	+		15177	22458	12333	12353	16753	16753					0.01672554954870975
GVELGDVFNE	10	Unmodified	_GVELGDVFNE_					0	0	0			REV__tr|A0A553SU21|A0A553SU21_NIACISulfurreductionproteinDsrEOS=NialliacirculansOX=1397GN=CEQ21_06165PE=4SV=1	REV__tr|A0A553SU21|A0A553SU21_NIACISulfurreductionproteinDsrEOS=NialliacirculansOX=1397GN=CEQ21_06165PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.2984008789062	2	539.756204	1077.49785	-0.57785	-0.0003119	-3.9046	-0.0021075	-4.4825	-0.0024194	539.753465898256	38.865	0.39613	35.939	35.7	36.097	-2.9264					11	7	2	0	0	0	0.026606	1	1563	1563		71.877	7.6702	1	18340	+		15178	31032	12334	12354	16754	16754					-0.03779447898568833
GVELSRWLL	9	Unmodified	_GVELSRWLL_					0	0	0			REV__ENST00000264649.10_1_17:40610912-40612943:+|nuORF	REV__ENST00000264649.10_1_17:40610912-40612943:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	536.8076171875	2	536.811116	1071.60768	0.23953	0.00012858	-4.4717	-0.0024004	-4.2321	-0.0022719	536.808594253858	65.887	1.3438	63.191	62.771	64.114	-2.6958					79	26	4	0	0	0	0.44568	1	5091	5091		47.657	1.6851	1	1324500	+		15179	24019	12335	12355	16755	16755					0.07474022231281197
GVEREVNIY	9	Unmodified	_GVEREVNIY_					0	0	0			REV__ENST00000577731.1_1_17:7478540-7480862:+|nuORF	REV__ENST00000577731.1_1_17:7478540-7480862:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	540.2975463867188	2	539.780013	1077.54547	-1.941	-0.0010477	2.2234	0.0012002	0.28242	0.00015244	540.2816410608103	38.78	0.24633	36.07	35.865	36.112	-2.7097					6	4	2	0	0	0	0.027455	1	1827	1827		42.396	0	1	11494	+		15180	27794	12336	12356	16756	16756					0.009802510922781948
GVEVEKVAYEV	11	Unmodified	_GVEVEKVAYEV_					0	0	0		tr|A0A7D7A1W3|A0A7D7A1W3_9CLOTTriggerfactorOS=ClostridiumintestinaleOX=36845GN=tigPE=3SV=1	tr|A0A7D7A1W3|A0A7D7A1W3_9CLOTTriggerfactorOS=ClostridiumintestinaleOX=36845GN=tigPE=3SV=1	tr|A0A7D7A1W3|A0A7D7A1W3_9CLOTTriggerfactorOS=ClostridiumintestinaleOX=36845GN=tigPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.2497253417969	3	407.883566	1220.62887	0.71918	0.00029334	-2.943	-0.0012004	-2.2238	-0.00090707	407.88232634240177	39.25	0.84147	39.25	38.705	39.547	0					41	18	4	0	0	0	0.025315	1	2302	2302		39.873	0	1	945950			15181	36050	12337	12357	16757	16757					0.027379427494679476
GVFAPKPRLA	10	Unmodified	_GVFAPKPRLA_					0	0	0			REV__SRGAP1|p.V1061Ffs*17|1|0.04|ENSG00000196935|chr12:64142593-64142594|-/CTTTGTAGGGACATGGATGAAAT|frameshift_variant	REV__SRGAP1|p.V1061Ffs*17|1|0.04|ENSG00000196935|chr12:64142593-64142594|-/CTTTGTAGGGACATGGATGAAAT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	528.3194580078125	2	528.321651	1054.62875	-1.2877	-0.00068031	-2.7436	-0.0014495	-4.0312	-0.0021298	528.3201028484496	56.253	2.2315	53.449	52.879	55.11	-2.804					126	44	4	0	0	0	0.68695	1	3923	3923		31.955	2.8053	1	541320	+		15182	29452	12338	12358	16758	16758					0.10362032330795046
GVFGRLTLQP	10	Unmodified	_GVFGRLTLQP_					0	0	0		ENST00000587493.1_1_18:34272943-34273198:+|nuORF	ENST00000587493.1_1_18:34272943-34273198:+|nuORF	ENST00000587493.1_1_18:34272943-34273198:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	544.3173828125	2	544.316566	1086.61858	-0.80065	-0.00043581	-2.9737	-0.0016187	-3.7744	-0.0020545	544.3147953600668	59.408	0.6823	59.408	59.12	59.802	0					31	17	2	0	0	0	0.55109	1	5108	5108		47.96	0.30219	1	2550800			15183	14065	12339	12359	16759	16759					0.07873424605554646
GVFMLILYHPS	11	Unmodified	_GVFMLILYHPS_					0	0	0			REV__ENST00000464196.5_1_Y:22749894-22750047:+|nuORF	REV__ENST00000464196.5_1_Y:22749894-22750047:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	638.843017578125	2	638.841559	1275.66857	-0.72166	-0.00046103	3.6914	0.0023582	2.9698	0.0018972	638.8438331848862	101.97	1.8306	100.44	99.845	101.68	-1.5211					95	34	5	0	0	0	0.68263	1	6996	6996		35.618	0.46626	1	808980	+		15184	26145	12340	12360	16760	16760					0.04175791219222447
GVFRGIQDV	9	Unmodified	_GVFRGIQDV_					0	0	0		STIM1-WT1|1|fusion;STIM1-WT1|2|fusion;nc|ENSG00000184937|P19544-9|WT1;chr11:32428619-32430530|419|63.53|0.64|6.64|-|ENST00000530998|WT1,WT1;chr11:32428619-32433936|409|24.38|0.12|7.66|-|ENST00000640146|WT1,WT1;nc|ENSG00000184937|P19544-6|WT1;nc|ENSG00000184937|P19544-2|WT1;nc|ENSG00000184937|P19544-3|WT1;nc|ENSG00000184937|P19544-4|WT1;nc|ENSG00000184937|P19544|WT1;nc|ENSG00000184937|P19544-8|WT1;ENSG00000184937|ENST00000452863|WT1	STIM1-WT1|1|fusion	STIM1-WT1|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	495.77301025390625	2	495.771991	989.529429	2.3061	0.0011433	0.2162	0.00010718	2.5223	0.0012505	495.7720474105323	86.211	0.84981	86.211	85.994	86.844	0					50	20	4	0	0	0	0.10502	2	9068	9068;9095		95.815	16.103	1	8403900			15185	32923	12341	12361	16761;16762	16761					0.034245896460333825
GVFRGLRPQ	9	Unmodified	_GVFRGLRPQ_					0	0	0		ENST00000265070.6_1_5:32174304-32174394:-|nuORF	ENST00000265070.6_1_5:32174304-32174394:-|nuORF	ENST00000265070.6_1_5:32174304-32174394:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7932739257812	2	515.30125	1028.58795	-0.63771	-0.00032861	2.5668	0.0013227	1.929	0.00099404	515.3028899775935	33.644	0.29458	33.644	33.434	33.728	0					7	5	2	0	0	0	0.027462	1	1542	1542		35.618	0	1	84399			15186	9943	12342	12362	16763	16763					0.07479691011167233
GVFTTTEK	8	Unmodified	_GVFTTTEK_					0	0	0		ENST00000447061.2_1_2:38512560-38513046:+|nuORF	ENST00000447061.2_1_2:38512560-38513046:+|nuORF	ENST00000447061.2_1_2:38512560-38513046:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	441.7329406738281	2	441.732	881.449448	1.2955	0.00057225	0.52563	0.00023219	1.8211	0.00080444	441.732048742844	45.18	0.95765	45.18	44.932	45.89	0					39	21	3	0	0	0	0.57734	1	3101	3101		68.787	10.005	1	1624800			15187	12002	12343	12363	16764	16764					0.003981032521778616
GVGDQVILLL	10	Unmodified	_GVGDQVILLL_					0	0	0			REV__nc|ENSG00000196189|Q9H3S1-2|SEMA4A	REV__nc|ENSG00000196189|Q9H3S1-2|SEMA4A	MULTI-MSMS	OvCa9_classI_Rep2	2	513.8150634765625	2	513.813325	1025.6121	-0.4504	-0.00023142	3.9685	0.002039	3.5181	0.0018076	513.8152848157494	74.741	2.4404	72.77	72.324	74.764	-1.9711					110	46	3	0	0	0	0.64697	1	6172	6172		36.447	2.2742	1	2623500	+		15188	22797	12344	12364	16765	16765					0.10031486654202126
GVGLAVVVSL	10	Unmodified	_GVGLAVVVSL_					0	0	0		ENST00000310842.8_1_7:76239320-76240795:-|nuORF;nc|ENSG00000188372|P21754-3|ZP3;ENSG00000188372|ENST00000394857|ZP3	ENST00000310842.8_1_7:76239320-76240795:-|nuORF	ENST00000310842.8_1_7:76239320-76240795:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	457.776611328125	2	457.289485	912.564418	0.0047925	2.1916E-06	-0.15854	-7.25E-05	-0.15375	-7.0309E-05	457.28938997552683	103.32	0.73699	101.89	101.55	102.29	-1.4347					28	13	3	0	0	0	0.026871	1	7190	7190		21.96	0	1	33619			15189	8470	12345	12365	16766	16766					0.10463832454001931
GVGPIRKV	8	Unmodified	_GVGPIRKV_					0	0	0		ENSG00000047932|ENST00000368498|GOPC;nc|ENSG00000047932|Q9HD26-2|GOPC;nc|ENSG00000047932|Q9HD26-3|GOPC	ENSG00000047932|ENST00000368498|GOPC	ENSG00000047932|ENST00000368498|GOPC	MULTI-MSMS	OvCa99_classI_Rep5	1	413.2689514160156	2	413.268887	824.523222	0.13674	5.6509E-05	-0.4572	-0.00018895	-0.32047	-0.00013244	413.2687056031389	41.831	1.1148	41.831	41.55	42.665	0					72	25	5	0	0	0	0.44269	2	2633	2633;2656		83.287	17.39	1	15427000			15190	1152	12346	12366	16767;16768	16767					0.10394116205179671
GVGRDNLITL	10	Unmodified	_GVGRDNLITL_					0	0	0			REV__ENSG00000061676|ENST00000361354|NCKAP1	REV__ENSG00000061676|ENST00000361354|NCKAP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.819580078125	2	529.303655	1056.59276	-0.93029	-0.00049241	1.4168	0.00074992	0.48651	0.00025751	529.3041486552975	73.69	1.8838	71.291	70.585	72.469	-2.3999					79	35	3	0	0	0	0.026551	1	5968	5968		35.152	8.4591	1	57408	+		15191	16745	12347	12367	16769	16769					0.0667253036326656
GVGRDNLITL	10	Unmodified	_GVGRDNLITL_					0	0	0			REV__ENSG00000061676|ENST00000361354|NCKAP1	REV__ENSG00000061676|ENST00000361354|NCKAP1	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.8203735351562	2	529.303655	1056.59276	-0.30539	-0.00016165	0.35313	0.00018691	0.047738	2.5268E-05	529.3037556509638	73.591	0.745	71.103	70.776	71.521	-2.4873					35	14	3	0	0	0	0.026522	1	3587	3587		75.043	39.425	1	97069	+		15192	16745	12347	12367	16770	16770					0.0667253036326656
GVGRPKPQPR	10	Unmodified	_GVGRPKPQPR_					0	0	0		ENSG00000142347|ENST00000644032|MYO1F	ENSG00000142347|ENST00000644032|MYO1F	ENSG00000142347|ENST00000644032|MYO1F	MULTI-SECPEP	OvCa9_classI_Rep3	3	546.8113403320312	2	546.325257	1090.63596	-0.97124	-0.00053061	2.1782	0.00119	1.2069	0.00065939	546.3267942746854	77.95	0.69434	75.597	75.353	76.048	-2.3527					21	13	2	0	0	0	0.027005	1	4133	4133		82.305	18.098	1	26480			15193	4968	12348	12368	16771	16771					0.09426764931231446
GVGVPTLLGLH	11	Unmodified	_GVGVPTLLGLH_					0	0	0			REV__nc|ENSG00000132466|O75179-2|ANKRD17	REV__nc|ENSG00000132466|O75179-2|ANKRD17	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8163452148438	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.72244	1	13714	13714		21.96	1.9631	1	166960	+		15194	19080	12349	12369	16772	16772					0.09498308748334239
GVGYLFKV	8	Unmodified	_GVGYLFKV_					0	0	0		tr|A0A7D6VTS5|A0A7D6VTS5_9CLOTIon-translocatingoxidoreductasecomplexsubunitGOS=ClostridiumintestinaleOX=36845GN=rnfGPE=3SV=1	tr|A0A7D6VTS5|A0A7D6VTS5_9CLOTIon-translocatingoxidoreductasecomplexsubunitGOS=ClostridiumintestinaleOX=36845GN=rnfGPE=3SV=1	tr|A0A7D6VTS5|A0A7D6VTS5_9CLOTIon-translocatingoxidoreductasecomplexsubunitGOS=ClostridiumintestinaleOX=36845GN=rnfGPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	442.2674255371094	2	441.757821	881.501089	0.57368	0.00025343	-3.5222	-0.001556	-2.9486	-0.0013026	441.7561604746489	59.126	0.33093	59.126	59.046	59.377	0					13	8	2	0	0	0	0.028476	1	5101	5101		26.796	5.8492	1	1868300			15195	35137	12350	12370	16773	16773					0.055598917367547074
GVHGGLINK	9	Unmodified	_GVHGGLINK_					0	0	0		ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	MULTI-MSMS	OvCa9_classI_Rep2	2	447.76141357421875	2	447.761426	893.5083	3.0745	0.0013767	-3.6026	-0.0016131	-0.52809	-0.00023646	447.7598280100484	41.285	2.468	38.576	38.34	40.808	-2.7097					118	49	4	0	0	0	0.018995	19	2145	2133;2139;2145;2151;2157;2163;2169;2175;2181;2187;2193;2199;2206;2214;2220;2227;2232;2238;2251		148.21	0	1	2968500		+	15196	2660	12351	12371	16774;16775;16776;16777;16778;16779;16780;16781;16782;16783;16784;16785;16786;16787;16788;16789;16790;16791;16792	16776					0.057286243371777346
GVHGGLINK	9	Unmodified	_GVHGGLINK_					0	0	0		ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	ENSG00000108518|ENST00000225655|PFN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	447.7614440917969	2	447.761426	893.5083	-0.55361	-0.00024789	-1.0501	-0.00047021	-1.6037	-0.00071809	447.761097197511	41.497	2.9834	38.516	38.231	41.215	-2.9804					178	57	6	0	0	0	0.032351	13	1845	1845;1855;1867;1879;1891;1903;1915;1927;1941;1952;1964;1979;1991		133.47	0	1	10246000		+	15197	2660	12351	12371	16793;16794;16795;16796;16797;16798;16799;16800;16801;16802;16803;16804;16805	16793					0.057286243371777346
GVHPVVPPL	9	Unmodified	_GVHPVVPPL_					0	0	0			REV__ENST00000373109.6_1_10:73819305-73819494:-|nuORF	REV__ENST00000373109.6_1_10:73819305-73819494:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	457.7761535644531	2	457.776545	913.538538	-0.25139	-0.00011508	0.24429	0.00011183	-0.0070935	-3.2473E-06	457.7764102415244	102.67	3.5614	101.99	99.754	103.32	-0.68459					182	71	4	0	0	0	0.53728	1	9469	9469		39.021	1.8624	1	377740	+		15198	25026	12352	12372	16806	16806					0.07830983002372705
GVHQSRLVH	9	Unmodified	_GVHQSRLVH_					0	0	0			REV__tr|A0A7D6VP53|A0A7D6VP53_9CLOT4Fe-4Sdiclusterdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17300PE=4SV=1	REV__tr|A0A7D6VP53|A0A7D6VP53_9CLOT4Fe-4Sdiclusterdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17300PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.3161010742188	2	516.788507	1031.56246	-0.72487	-0.0003746	-2.1752	-0.0011241	-2.9	-0.0014987	517.2886398913694	40.502	0.46376	40.502	40.247	40.711	0					13	9	2	0	0	0	0.027433	1	2482	2482		71.296	15.791	1	111630	+		15199	31229	12353	12373	16807	16807					0.047942164887672334
GVHQSRLVH	9	Unmodified	_GVHQSRLVH_					0	0	0			REV__tr|A0A7D6VP53|A0A7D6VP53_9CLOT4Fe-4Sdiclusterdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17300PE=4SV=1	REV__tr|A0A7D6VP53|A0A7D6VP53_9CLOT4Fe-4Sdiclusterdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17300PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	516.788507	1031.56246	0.68665	0.00035485	-0.78044	-0.00040332	-0.093791	-4.847E-05	516.7882424253253	43.443	0.69464	40.733	40.608	41.303	-2.7097	0.081837	0.00048069	NaN	71.296	25	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38907	+		15200	31229	12353	12373							0.047942164887672334
GVHQSRLVH	9	Unmodified	_GVHQSRLVH_					0	0	0			REV__tr|A0A7D6VP53|A0A7D6VP53_9CLOT4Fe-4Sdiclusterdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17300PE=4SV=1	REV__tr|A0A7D6VP53|A0A7D6VP53_9CLOT4Fe-4Sdiclusterdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17300PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	516.788507	1031.56246	-1.3215	-0.00068292	-2.0944	-0.0010824	-3.4159	-0.0017653	516.7868265460501	43.726	1.3824	40.718	40.01	41.393	-3.0074	0.066961	-0.00087743	NaN	71.296	42	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162630	+		15201	31229	12353	12373							0.047942164887672334
GVHTLGTK	8	Unmodified	_GVHTLGTK_					0	0	0		tr|A0A553SJF8|A0A553SJF8_NIACICysteinedesulfuraseOS=NialliacirculansOX=1397GN=CEQ21_16710PE=3SV=1	tr|A0A553SJF8|A0A553SJF8_NIACICysteinedesulfuraseOS=NialliacirculansOX=1397GN=CEQ21_16710PE=3SV=1	tr|A0A553SJF8|A0A553SJF8_NIACICysteinedesulfuraseOS=NialliacirculansOX=1397GN=CEQ21_16710PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.56121826171875	2	406.734877	811.455202	0.21326	8.6742E-05	-0.28052	-0.0001141	-0.067257	-2.7356E-05	406.73466642413297	65.696	0.51846	65.696	65.385	65.904	0					18	12	2	0	0	0	0.028476	1	6020	6020		13.775	10.091	1	518200			15202	33498	12354	12374	16808	16808					0.04193246554518737
GVHVHQGLDQL	11	Unmodified	_GVHVHQGLDQL_					0	0	0			REV__ENSG00000148204|ENST00000373631|CRB2	REV__ENSG00000148204|ENST00000373631|CRB2	MULTI-MSMS	OvCa99_classI_Rep5	1	401.5491943359375	3	401.5474	1201.62037	1.4521	0.00058309	2.4479	0.00098296	3.9	0.0015661	401.54824890083074	46.614	1.9639	46.614	46.284	48.248	0					109	44	6	0	0	0	0.6112	2	3293	3293;3317		43.651	0.91146	1	9806900	+		15203	20093	12355	12375	16809;16810	16809					0.027624336235248848
GVIALYLDLH	10	Unmodified	_GVIALYLDLH_					0	0	0			REV__nc|ENSG00000158865|Q8WWX8-5|SLC5A11	REV__nc|ENSG00000158865|Q8WWX8-5|SLC5A11	MULTI-MSMS	OvCa9_classI_Rep2	2	557.3165283203125	2	557.318774	1112.623	-1.9914	-0.0011099	-0.89828	-0.00050063	-2.8897	-0.0016105	557.3181775816473	36.131	1.4315	33.421	33.152	34.583	-2.7097					66	28	4	0	0	0	0.71192	1	1567	1567		29.15	3.6994	1	384370	+		15204	20588	12356	12376	16811	16811					0.07118889028470221
GVIDGHIYAV	10	Unmodified	_GVIDGHIYAV_					0	0	0		ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.2802734375	2	522.279649	1042.54475	-0.15416	-8.0512E-05	-0.54853	-0.00028649	-0.70269	-0.000367	522.2792472116954	98.127	1.5847	95.749	95.47	97.054	-2.3786					53	30	2	0	0	0	0.59703	1	8717	8717		42.396	1.8235	1	488360			15205	1626	12357	12377	16812	16812					0.025174564432063562
GVIISIVII	9	Unmodified	_GVIISIVII_					0	0	0			REV__tr|A0A7D6ZWT0|A0A7D6ZWT0_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20280PE=3SV=1	REV__tr|A0A7D6ZWT0|A0A7D6ZWT0_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20280PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	463.7987060546875	2	463.817879	925.621205	0.29046	0.00013472	-3.2802	-0.0015214	-2.9897	-0.0013867	463.8164416073005	71.111	0.15074	68.392	68.316	68.466	-2.7196					4	2	2	0	0	0	0.027449	1	3293	3293		40.573	0	1	6383.8	+		15206	32301	12358	12378	16813	16813					0.15541880010505338
GVIKITKIE	9	Unmodified	_GVIKITKIE_					0	0	0			REV__nc|ENSG00000152952|O00469|PLOD2	REV__nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	OvCa9_classI_Rep2	2	500.8251953125	2	500.823692	999.632832	-1.7989	-0.00090096	2.2709	0.0011373	0.47195	0.00023637	500.8247449295919	61.278	4.4126	58.518	58.094	62.506	-2.7593					209	84	4	0	0	0	0.33652	2	4535	4535;4564		58.782	1.8235	1	946070	+		15207	20312	12359	12379	16814;16815	16814					0.13300077033829893
GVIKTAETIEK	11	Unmodified	_GVIKTAETIEK_					0	0	0			REV__tr|A0A7D6ZI59|A0A7D6ZI59_9CLOTUPF0735ACTdomain-containingproteinHZF06_05800OS=ClostridiumintestinaleOX=36845GN=HZF06_05800PE=3SV=1	REV__tr|A0A7D6ZI59|A0A7D6ZI59_9CLOTUPF0735ACTdomain-containingproteinHZF06_05800OS=ClostridiumintestinaleOX=36845GN=HZF06_05800PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	594.8479614257812	2	594.845353	1187.67615	-0.24859	-0.00014787	0.28039	0.00016679	0.031801	1.8916E-05	594.8454791497022	80.102	1.4191	77.392	77.075	78.494	-2.7106					69	28	4	0	0	0	0.55686	1	6524	6524		48.602	6.2054	1	372620	+		15208	32049	12360	12380	16816	16816					0.08982222020472364
GVILAQCSL	9	Unmodified	_GVILAQCSL_					0	0	0		ENST00000508913.5_1_5:43043449-43044931:+|nuORF	ENST00000508913.5_1_5:43043449-43044931:+|nuORF	ENST00000508913.5_1_5:43043449-43044931:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	452.25396728515625	2	452.252046	902.489538	0.8613	0.00038952	3.2498	0.0014697	4.1111	0.0018593	452.2534208986577	33.657	1.7812	30.947	30.722	32.503	-2.7097					88	35	4	0	0	0	0.56889	1	1272	1272		35.618	5.1146	1	1170300			15209	12954	12361	12381	16817	16817					0.0343932665111879
GVIMKLDYLND	11	Unmodified	_GVIMKLDYLND_					0	0	0		tr|A0A553ST01|A0A553ST01_NIACIAlpha-amylaseOS=NialliacirculansOX=1397GN=CEQ21_04050PE=3SV=1	tr|A0A553ST01|A0A553ST01_NIACIAlpha-amylaseOS=NialliacirculansOX=1397GN=CEQ21_04050PE=3SV=1	tr|A0A553ST01|A0A553ST01_NIACIAlpha-amylaseOS=NialliacirculansOX=1397GN=CEQ21_04050PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	428.21636962890625	3	427.556684	1279.64822	-0.36476	-0.00015596	1.3786	0.00058942	1.0138	0.00043346	427.5572240258701	42.418	0.59724	42.418	42.199	42.796	0					20	13	2	0	0	0	0.025772	1	2746	2746		33.039	0	1	72009			15210	34442	12362	12382	16818	16818					0.019585757687309524
GVIRAIVR	8	Unmodified	_GVIRAIVR_					0	0	0		nc|ENSG00000174547|Q9Y3B7-3|MRPL11;ENSG00000174547|ENST00000310999|MRPL11	nc|ENSG00000174547|Q9Y3B7-3|MRPL11	nc|ENSG00000174547|Q9Y3B7-3|MRPL11	MULTI-MSMS	OvCa9_classI_Rep3	3	442.2955017089844	2	442.295436	882.57632	1.1711	0.00051796	-1.1461	-0.00050691	0.024984	1.105E-05	442.29478158901236	67.455	1.5001	64.568	64.341	65.841	-2.8873					61	29	3	0	0	0	0.73626	1	2862	2862		33.516	5.2613	1	227400			15211	7474	12363	12383	16819	16819					0.13033493987848033
GVITSIPVVV	10	Unmodified	_GVITSIPVVV_					0	0	0		tr|A0A7D6VXV8|A0A7D6VXV8_9CLOTAzlCfamilyABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15270PE=3SV=1	tr|A0A7D6VXV8|A0A7D6VXV8_9CLOTAzlCfamilyABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15270PE=3SV=1	tr|A0A7D6VXV8|A0A7D6VXV8_9CLOTAzlCfamilyABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15270PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.3033752441406	2	492.310418	982.606283	-1.1059	-0.00054443	0.70238	0.00034579	-0.40348	-0.00019864	492.31062209834545	107.11	0.52666	105.23	104.91	105.43	-1.8785					17	9	2	0	0	0	0.026871	1	9768	9768		37.159	1.5408	1	134700			15212	35303	12364	12384	16820	16820					0.11428388142519452
GVIVAVLVEK	10	Unmodified	_GVIVAVLVEK_					0	0	0			REV__ENSG00000162512|ENST00000339394|SDC3	REV__ENSG00000162512|ENST00000339394|SDC3	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.8156127929688	2	513.831517	1025.64848	-0.44841	-0.00023041	-3.6113	-0.0018556	-4.0597	-0.002086	513.8288153907589	74.863	0.20441	72.892	72.744	72.948	-1.9711					5	3	2	0	0	0	0.026782	1	6148	6148		45.972	0	1	6661.3	+		15213	20740	12365	12385	16821	16821					0.13668363550891627
GVKAEELRGL	10	Unmodified	_GVKAEELRGL_					0	0	0			REV__ENST00000488174.5_1_X:70752999-70764494:+|nuORF	REV__ENST00000488174.5_1_X:70752999-70764494:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.808349609375	2	536.31148	1070.60841	-0.23555	-0.00012633	0.57991	0.00031101	0.34436	0.00018468	536.3114615040413	65.068	1.1751	62.344	61.917	63.092	-2.7245					56	22	3	0	0	0	0.027001	1	5073	5073		35.152	3.6222	1	277150	+		15214	26617	12366	12386	16822	16822					0.07592816880332975
GVKFEFYKAPL	11	Unmodified	_GVKFEFYKAPL_					0	0	0		tr|A0A7D6VV10|A0A7D6VV10_9CLOTNAD(P)-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22585PE=4SV=1	tr|A0A7D6VV10|A0A7D6VV10_9CLOTNAD(P)-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22585PE=4SV=1	tr|A0A7D6VV10|A0A7D6VV10_9CLOTNAD(P)-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22585PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	433.5755310058594	3	433.576296	1297.70706	1.7463	0.00075715	-3.4304	-0.0014873	-1.6841	-0.00073018	433.57473970684964	64.458	1.2134	61.465	61.242	62.456	-2.9933					51	23	3	0	0	0	0.71831	1	2503	2503		23.378	0.79825	1	102690			15215	35208	12367	12387	16823	16823					0.07011420125377299
GVKGLRVLPS	10	Unmodified	_GVKGLRVLPS_					0	0	0			REV__chr1:84479849-84480956|87|11.46|0.25|5.5|+|2|None,RPF1|1	REV__chr1:84479849-84480956|87|11.46|0.25|5.5|+|2|None,RPF1|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	512.8138427734375	2	513.326934	1024.63931	-1.8195	-0.00093402	1.3179	0.00067649	-0.50169	-0.00025753	513.3275381470492	62.876	1.4465	60.132	59.449	60.895	-2.7444					71	27	4	0	0	0	0.026606	1	4819	4819		71.877	25.926	1	561320	+		15216	15836	12368	12388	16824	16824					0.12798014985219197
GVKGLRVLPS	10	Unmodified	_GVKGLRVLPS_					0	0	0			REV__chr1:84479849-84480956|87|11.46|0.25|5.5|+|2|None,RPF1|1	REV__chr1:84479849-84480956|87|11.46|0.25|5.5|+|2|None,RPF1|1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	513.326934	1024.63931	1.7148	0.00088025	-1.3614	-0.00069885	0.35338	0.0001814	513.3261509834831	63.377	0.44698	60.343	60.163	60.61	-3.0339	0.081508	-0.001628	NaN	71.877	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7067.9	+		15217	15836	12368	12388							0.12798014985219197
GVKIPTCKIT	10	Carbamidomethyl (C)	_GVKIPTC(Carbamidomethyl (C))KIT_	GVKIPTC(1)KIT		GVKIPTC(56)KIT		0	1	0		ENSG00000100591|ENST00000216479|AHSA1;nc|ENSG00000100591|O95433-2|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	MULTI-MSMS	OvCa99_classI_Rep5	1	558.8275146484375	2	558.825909	1115.63727	-0.47602	-0.00026601	3.5293	0.0019723	3.0533	0.0017063	558.8277703909696	28.03	0.49919	28.03	27.791	28.29	0					17	9	3	0	0	0	0.48398	1	881	881		56.434	18.622	1	190050			15218	2086	12369	12389	16825	16825	16				0.08407218185084275
GVKKARTEGE	10	Unmodified	_GVKKARTEGE_					0	0	0		ENST00000310847.8_1_13:111545156-111545609:-|nuORF	ENST00000310847.8_1_13:111545156-111545609:-|nuORF	ENST00000310847.8_1_13:111545156-111545609:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	537.7979125976562	2	537.798737	1073.58292	0.011302	6.0782E-06	0.054245	2.9173E-05	0.065547	3.5251E-05	537.7986148216414	21.845	0.38263	21.845	21.698	22.08	0					35	13	4	0	0	0	0.6349	1	145	145		37.812	3.639	1	251210			15219	10289	12370	12390	16826	16826					0.04907342357887501
GVKKPTKAL	9	Unmodified	_GVKKPTKAL_					0	0	0		nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1;chr12:24878649-24894275|315|12.83|0.4|5.01|-|ENST00000539780|BCAT1,BCAT1;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1;BCAT1|p.Q244Sfs*14|1|0.12|ENSG00000060982|chr12:24842169-24842170|-/A|frameshift_variant;BCAT1|p.Q244Kfs*22|1|0.12|ENSG00000060982|chr12:24842170-24842171|-/AGAACCTACAAATGCAGCTTGTTTT|frameshift_variant;ENST00000544418.1_1_12:24987681-25055019:-|nuORF;BCAT1-PRB3|4|fusion;BCAT1-PRB3|2|fusion;BCAT1-PRB3|1|fusion;BCAT1-PRB3|3|fusion;BCAT1-PRB3|5|fusion	nc|ENSG00000060982|P54687-2|BCAT1	nc|ENSG00000060982|P54687-2|BCAT1	MULTI-MSMS	OvCa9_classI_Rep2	2	471.31048583984375	2	471.310752	940.606951	-1.3467	-0.0006347	0.9748	0.00045943	-0.37187	-0.00017526	471.31115558776486	33.805	2.3785	31.096	30.823	33.201	-2.7097					116	47	5	0	0	0	0.1944	9	1263	1224;1228;1233;1239;1245;1257;1263;1288;1300		77.318	17.617	1	1913400			15220	313	12371	12391	16827;16828;16829;16830;16831;16832;16833;16834;16835	16833					0.13427227582224077
GVKKPTKAL	9	Unmodified	_GVKKPTKAL_					0	0	0		nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1;chr12:24878649-24894275|315|12.83|0.4|5.01|-|ENST00000539780|BCAT1,BCAT1;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1;BCAT1|p.Q244Sfs*14|1|0.12|ENSG00000060982|chr12:24842169-24842170|-/A|frameshift_variant;BCAT1|p.Q244Kfs*22|1|0.12|ENSG00000060982|chr12:24842170-24842171|-/AGAACCTACAAATGCAGCTTGTTTT|frameshift_variant;ENST00000544418.1_1_12:24987681-25055019:-|nuORF;BCAT1-PRB3|4|fusion;BCAT1-PRB3|2|fusion;BCAT1-PRB3|1|fusion;BCAT1-PRB3|3|fusion;BCAT1-PRB3|5|fusion	nc|ENSG00000060982|P54687-2|BCAT1	nc|ENSG00000060982|P54687-2|BCAT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.3099670410156	2	471.310752	940.606951	0.63501	0.00029929	-0.99591	-0.00046938	-0.36089	-0.00017009	471.31024904441927	22.362	2.2823	21.024	20.523	22.806	-1.3386					219	69	5	0	0	0	0.22621	3	306	270;306;339		71.877	15.094	1	1692100			15221	313	12371	12391	16836;16837;16838	16837					0.13427227582224077
GVKKPTKAL	9	Unmodified	_GVKKPTKAL_					0	0	0		nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1;chr12:24878649-24894275|315|12.83|0.4|5.01|-|ENST00000539780|BCAT1,BCAT1;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1;BCAT1|p.Q244Sfs*14|1|0.12|ENSG00000060982|chr12:24842169-24842170|-/A|frameshift_variant;BCAT1|p.Q244Kfs*22|1|0.12|ENSG00000060982|chr12:24842170-24842171|-/AGAACCTACAAATGCAGCTTGTTTT|frameshift_variant;ENST00000544418.1_1_12:24987681-25055019:-|nuORF;BCAT1-PRB3|4|fusion;BCAT1-PRB3|2|fusion;BCAT1-PRB3|1|fusion;BCAT1-PRB3|3|fusion;BCAT1-PRB3|5|fusion	nc|ENSG00000060982|P54687-2|BCAT1	nc|ENSG00000060982|P54687-2|BCAT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.3105163574219	2	471.310752	940.606951	1.3289	0.00062632	-1.6854	-0.00079433	-0.35646	-0.000168	471.3099028886094	32.057	2.5601	29.362	28.732	31.293	-2.6954					224	67	4	0	0	0	0.12515	6	731	707;731;750;774;824;874		90.37	16.395	1	1074400			15222	313	12371	12391	16839;16840;16841;16842;16843;16844	16840					0.13427227582224077
GVKLAHVAE	9	Unmodified	_GVKLAHVAE_					0	0	0			REV__tr|A0A553STJ0|A0A553STJ0_NIACICarbohydratediacidregulatorOS=NialliacirculansOX=1397GN=CEQ21_05100PE=3SV=1	REV__tr|A0A553STJ0|A0A553STJ0_NIACICarbohydratediacidregulatorOS=NialliacirculansOX=1397GN=CEQ21_05100PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	462.28839111328125	2	462.269084	922.523616	-1.1613	-0.00053683	2.972	0.0013739	1.8107	0.00083705	462.2703347384347	85.837	0.75224	83.617	83.285	84.037	-2.2204					29	14	3	0	0	0	0.027462	1	5094	5094		44.117	5.0953	1	71521	+		15223	30971	12372	12392	16845	16845					0.05925491134371441
GVKLGVGAF	9	Unmodified	_GVKLGVGAF_					0	0	0		nc|ENSG00000085831|Q5SRH9-3|TTC39A;ENSG00000085831|ENST00000680483|TTC39A;nc|ENSG00000085831|Q5SRH9-6|TTC39A;nc|ENSG00000085831|Q5SRH9-4|TTC39A;nc|ENSG00000085831|Q5SRH9|TTC39A	nc|ENSG00000085831|Q5SRH9-3|TTC39A	nc|ENSG00000085831|Q5SRH9-3|TTC39A	MULTI-SECPEP	OvCa99_classI_Rep5	1	424.7403564453125	2	424.255446	846.496338	0.29625	0.00012568	-0.34419	-0.00014602	-0.047942	-2.034E-05	424.2550857607862	31.194	0.72789	31.194	30.881	31.608	0					22	14	2	0	0	0	0.027456	1	1249	1249		26.796	1.3459	1	151400			15224	1740	12373	12393	16846	16846					0.06695007593987157
GVKSIVVK	8	Unmodified	_GVKSIVVK_					0	0	0		TLE6|p.D422A|1|0.16|ENSG00000104953|chr19:2991863-2991863|A/C|missense_variant;TLE6|p.G431R|1|0.19|ENSG00000104953|chr19:2991889-2991889|G/C|missense_variant;ENST00000497878.5_1_19:2988043-2994999:+|nuORF;nc|ENSG00000104953|Q9H808-2|TLE6;ENSG00000104953|ENST00000246112|TLE6	TLE6|p.D422A|1|0.16|ENSG00000104953|chr19:2991863-2991863|A/C|missense_variant	TLE6|p.D422A|1|0.16|ENSG00000104953|chr19:2991863-2991863|A/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	415.7230224609375	2	415.278921	828.543289	-0.85502	-0.00035507	0.93081	0.00038654	0.075785	3.1472E-05	415.27921341813914	45.765	0.83674	42.726	42.386	43.223	-3.0385					20	15	2	0	0	0	0.028476	1	2392	2392		17.365	9.6747	1	13118			15225	32961	12374	12394	16847	16847					0.12215867145130233
GVKSPPLI	8	Unmodified	_GVKSPPLI_					0	0	0		nc|ENSG00000171208|Q8NC67-3|NETO2;ENSG00000171208|ENST00000562435|NETO2	nc|ENSG00000171208|Q8NC67-3|NETO2	nc|ENSG00000171208|Q8NC67-3|NETO2	MULTI-MSMS	OvCa99_classI_Rep5	1	405.75653076171875	2	405.757821	809.501089	0.82677	0.00033547	-3.7516	-0.0015222	-2.9248	-0.0011868	405.7561566500168	35.962	0.59813	35.962	35.753	36.351	0					25	12	3	0	0	0	0.64377	1	1868	1868		54.765	12.29	1	334790			15226	7183	12375	12395	16848	16848					0.08871891736748694
GVKVTKKQK	9	Unmodified	_GVKVTKKQK_					0	0	0			REV__DCAF4L2|p.R20K|1|0.32|ENSG00000176566|chr8:87873913-87873913|C/T|missense_variant	REV__DCAF4L2|p.R20K|1|0.32|ENSG00000176566|chr8:87873913-87873913|C/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.302978515625	2	508.334759	1014.65496	-0.52163	-0.00026516	-0.56753	-0.0002885	-1.0892	-0.00055366	508.3343434111923	38.092	0.67989	38.092	37.851	38.531	0					32	14	3	0	0	0	0.027433	1	2122	2122		64.207	18.255	1	551410	+		15227	16270	12376	12396	16849	16849					0.1482230150227224
GVLAALCEK	9	Unmodified	_GVLAALCEK_					0	0	0		nc|ENSG00000127586|Q8WVB6-2|CHTF18;ENSG00000127586|ENST00000262315|CHTF18;nc|ENSG00000127586|Q8WVB6-3|CHTF18	nc|ENSG00000127586|Q8WVB6-2|CHTF18	nc|ENSG00000127586|Q8WVB6-2|CHTF18	MULTI-MSMS	OvCa9_classI_Rep4_	4	452.2540283203125	2	452.252046	902.489538	0.61622	0.00027869	3.7958	0.0017166	4.412	0.0019953	452.25355541518655	21.533	1.7415	20.194	19.77	21.512	-1.3386					84	35	3	0	0	0	0.55588	1	176	176		37.159	1.5408	1	281670			15228	15004	12377	12397	16850	16850					0.034393266511074216
GVLAATGTAI	10	Unmodified	_GVLAATGTAI_					0	0	0			REV__tr|A0A7D7A008|A0A7D7A008_9CLOTSporematurationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22195PE=4SV=1	REV__tr|A0A7D7A008|A0A7D7A008_9CLOTSporematurationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22195PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	437.254638671875	2	437.255643	872.496732	-0.15637	-6.8376E-05	2.0501	0.00089644	1.8938	0.00082806	437.2563961772115	44.157	0.35478	44.157	43.995	44.35	0					12	7	2	0	0	0	0.64063	1	2970	2970		37.159	3.6435	1	216830	+		15229	32430	12378	12398	16851	16851					0.055383825231729134
GVLAATGTAI	10	Unmodified	_GVLAATGTAI_					0	0	0			REV__tr|A0A7D7A008|A0A7D7A008_9CLOTSporematurationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22195PE=4SV=1	REV__tr|A0A7D7A008|A0A7D7A008_9CLOTSporematurationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22195PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	437.255643	872.496732	-0.15637	-6.8376E-05	2.0501	0.00089644	1.8938	0.00082806	437.2563961772115	44.157	0.35478	44.157	43.995	44.35	0	-0.13366	0.0006638	NaN	37.159	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216830	+		15230	32430	12378	12398							0.055383825231729134
GVLAATGTAI	10	Unmodified	_GVLAATGTAI_					0	0	0			REV__tr|A0A7D7A008|A0A7D7A008_9CLOTSporematurationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22195PE=4SV=1	REV__tr|A0A7D7A008|A0A7D7A008_9CLOTSporematurationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22195PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	437.255643	872.496732	0.13446	5.8794E-05	1.1449	0.00050061	1.2794	0.00055941	437.2559917429772	47.125	0.79299	44.415	44.043	44.836	-2.7097	0.12387	-0.00012785	NaN	37.159	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30206	+		15231	32430	12378	12398							0.055383825231729134
GVLAATGTAI	10	Unmodified	_GVLAATGTAI_					0	0	0			REV__tr|A0A7D7A008|A0A7D7A008_9CLOTSporematurationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22195PE=4SV=1	REV__tr|A0A7D7A008|A0A7D7A008_9CLOTSporematurationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22195PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	437.255643	872.496732	0.27053	0.00011829	1.0654	0.00046587	1.336	0.00058416	437.2559146195651	47.382	1.5227	44.301	43.852	45.374	-3.0812	0.009796	-0.00019734	NaN	37.159	42	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79927	+		15232	32430	12378	12398							0.055383825231729134
GVLAKCFHEP	10	Unmodified	_GVLAKCFHEP_					0	0	0			REV__ENST00000552014.5_1_12:113737449-113737581:-|nuORF	REV__ENST00000552014.5_1_12:113737449-113737581:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	550.7827758789062	2	550.781502	1099.54845	1.3458	0.00074124	2.0897	0.001151	3.4355	0.0018922	550.7825579804899	42.558	0.98736	39.848	39.621	40.608	-2.7097					51	19	3	0	0	0	0.58067	1	2314	2314		44.377	1.5129	1	269590	+		15233	27491	12379	12399	16852	16852					0.002658029454323696
GVLCGRLQTK	10	Unmodified	_GVLCGRLQTK_					0	0	0			REV__ENST00000401880.1_1_6:104465575-104466139:-|nuORF	REV__ENST00000401880.1_1_6:104465575-104466139:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	537.806884765625	2	537.808051	1073.60155	-0.94155	-0.00050637	-2.9627	-0.0015934	-3.9043	-0.0020998	537.8064194762118	69.853	1.4073	67.282	66.915	68.322	-2.5707					86	27	5	0	0	0	0.45822	2	5560	5560;5573		60.118	3.6845	1	1089100	+		15234	25415	12380	12400	16853;16854	16853					0.06769180728088031
GVLDFLEEV	9	Unmodified	_GVLDFLEEV_					0	0	0		nc|ENSG00000179295|Q06124-3|PTPN11;ENSG00000179295|ENST00000351677|PTPN11;nc|ENSG00000179295|Q06124-1|PTPN11	nc|ENSG00000179295|Q06124-3|PTPN11	nc|ENSG00000179295|Q06124-3|PTPN11	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.7644958496094	2	510.76604	1019.51753	-1.1759	-0.0006006	-1.9112	-0.00097616	-3.0871	-0.0015768	510.76498418991224	42.625	1.2582	39.644	39.41	40.668	-2.9804					60	23	3	0	0	0	0.33652	1	2001	2001		58.782	9.3404	1	688700			15235	7813	12381	12401	16855	16855					0.00854928112187281
GVLELIVAI	9	Unmodified	_GVLELIVAI_					0	0	0			REV__SLC6A14|p.A490V|1|0.06|ENSG00000268104|chrX:116455041-116455041|C/T|missense_variant	REV__SLC6A14|p.A490V|1|0.06|ENSG00000268104|chrX:116455041-116455041|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	463.7980041503906	2	463.799686	925.584819	0.21037	9.7568E-05	-3.9036	-0.0018105	-3.6932	-0.0017129	463.7978667804196	70.561	4.2201	67.99	67.714	71.934	-2.5707					173	80	4	0	0	0	0.59983	1	5649	5649		31.955	0.37597	1	2590100	+		15236	29370	12382	12402	16856	16856					0.11905003113804469
GVLELIVAI	9	Unmodified	_GVLELIVAI_					0	0	0			REV__SLC6A14|p.A490V|1|0.06|ENSG00000268104|chrX:116455041-116455041|C/T|missense_variant	REV__SLC6A14|p.A490V|1|0.06|ENSG00000268104|chrX:116455041-116455041|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	463.798583984375	2	463.799686	925.584819	0.29403	0.00013637	-3.7598	-0.0017438	-3.4658	-0.0016074	463.7979721487958	70.79	6.0908	68.07	67.699	73.79	-2.7196					279	121	5	0	0	0	0.42057	3	3281	3281;3306;3317		50.025	7.5501	1	3593600	+		15237	29370	12382	12402	16857;16858;16859	16857					0.11905003113804469
GVLELIVAI	9	Unmodified	_GVLELIVAI_					0	0	0			REV__SLC6A14|p.A490V|1|0.06|ENSG00000268104|chrX:116455041-116455041|C/T|missense_variant	REV__SLC6A14|p.A490V|1|0.06|ENSG00000268104|chrX:116455041-116455041|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.7982177734375	2	463.799686	925.584819	-1.4154	-0.00065646	-2.4017	-0.0011139	-3.8171	-0.0017704	463.7985594679424	71.828	2.2794	68.371	68.074	70.354	-3.4563					134	46	4	0	0	0	0.52083	4	5481	5481;5492;5516;5527		40.573	7.057	1	2935000	+		15238	29370	12382	12402	16860;16861;16862;16863	16860					0.11905003113804469
GVLFKEAVWR	10	Unmodified	_GVLFKEAVWR_					0	0	0		L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|379|2|anti-sense	L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|379|2|anti-sense	L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|379|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.5635070800781	3	402.232752	1203.67643	0.69005	0.00027756	-1.4071	-0.00056597	-0.71703	-0.00028841	402.2321781348918	44.418	0.3127	44.418	44.26	44.573	0					9	6	2	0	0	0	0.026906	1	2999	2999		27.047	4.4677	1	310820			15239	14679	12383	12403	16864	16864					0.08273686530969826
GVLFVKRG	8	Unmodified	_GVLFVKRG_					0	0	0		ENST00000264025.7_1_11:119534775-119534964:-|nuORF	ENST00000264025.7_1_11:119534775-119534964:-|nuORF	ENST00000264025.7_1_11:119534775-119534964:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	437.7524719238281	2	438.276712	874.538872	-0.16577	-7.2654E-05	-0.40707	-0.00017841	-0.57284	-0.00025106	438.27647538069243	34.655	0.3735	34.655	34.444	34.818	0					12	7	2	0	0	0	0.028476	1	1690	1690		14.664	0	1	35982			15240	9924	12384	12404	16865	16865					0.0965840272223204
GVLKNLVL	8	Unmodified	_GVLKNLVL_					0	0	0		L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|421|3|anti-sense	L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|421|3|anti-sense	L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|421|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	428.2866516113281	2	428.286746	854.558939	-0.64189	-0.00027491	0.81398	0.00034862	0.17209	7.3704E-05	428.28696961623916	106.76	1.2436	104.89	104.54	105.79	-1.8785					62	23	4	0	0	0	0.68312	1	9734	9734		46.766	7.5136	1	512020			15241	14699	12385	12405	16866	16866					0.12584153662180597
GVLLGVIVAGE	11	Unmodified	_GVLLGVIVAGE_					0	0	0			REV__ENST00000472394.2_1_10:70143908-70166946:-|nuORF	REV__ENST00000472394.2_1_10:70143908-70166946:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	513.8162231445312	2	513.813325	1025.6121	-0.17927	-9.2113E-05	3.3719	0.0017325	3.1926	0.0016404	513.8151245610528	74.922	2.6818	72.512	71.994	74.676	-2.4106					138	52	4	0	0	0	0.62497	1	3768	3768		42.396	0	1	3292300	+		15242	23128	12386	12406	16867	16867					0.10031486654179389
GVLLGVIVAGE	11	Unmodified	_GVLLGVIVAGE_					0	0	0			REV__ENST00000472394.2_1_10:70143908-70166946:-|nuORF	REV__ENST00000472394.2_1_10:70143908-70166946:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.816650390625	2	513.813325	1025.6121	-0.22749	-0.00011689	3.8065	0.0019558	3.579	0.0018389	513.8151298922651	75.964	2.6418	73.025	72.401	75.043	-2.9389					148	54	4	0	0	0	0.68263	1	6044	6044		35.618	0.41757	1	2672000	+		15243	23128	12386	12406	16868	16868					0.10031486654179389
GVLLIGTR	8	Unmodified	_GVLLIGTR_					0	0	0			REV__ENST00000182527.3_1_6:52367444-52367987:-|nuORF	REV__ENST00000182527.3_1_6:52367444-52367987:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.5715637207031	2	414.76872	827.522887	0.15121	6.2717E-05	0.13843	5.7418E-05	0.28964	0.00012013	414.7686855303962	22.557	1.135	21.164	20.671	21.806	-1.3935					47	29	2	0	0	0	0.028476	1	272	272		33.516	3.674	1	31392	+		15244	23691	12387	12407	16869	16869					0.10222696485323013
GVLLPSLVE	9	Unmodified	_GVLLPSLVE_					0	0	0		ENSG00000175262|ENST00000377004|C1orf127;nc|nan|Q8N9H9|C1orf127;nc|nan|Q8N9H9-2|C1orf127	ENSG00000175262|ENST00000377004|C1orf127	ENSG00000175262|ENST00000377004|C1orf127	MULTI-SECPEP	OvCa9_classI_Rep3	3	463.7981262207031	2	463.781493	925.548434	0.32758	0.00015193	4.397	0.0020392	4.7246	0.0021912	463.78354637057174	70.908	0.86488	68.188	67.75	68.615	-2.7196					28	16	3	0	0	0	0.027417	1	3233	3233		45.952	12.436	1	49707			15245	7528	12388	12408	16870	16870					0.08268126217080862
GVLLRVRA	8	Unmodified	_GVLLRVRA_					0	0	0			REV__ENSG00000140274|ENST00000323030|DUOXA2	REV__ENSG00000140274|ENST00000323030|DUOXA2	MULTI-MSMS	OvCa9_classI_Rep3	3	442.2950744628906	2	442.295436	882.57632	1.1711	0.00051796	-1.1461	-0.00050691	0.024984	1.105E-05	442.29478158901236	67.455	1.5001	64.568	64.341	65.841	-2.8873					61	29	3	0	0	0	0.75241	1	2845	2845		25.45	6.0902	1	227400	+		15246	19657	12389	12409	16871	16871					0.13033493987836664
GVLLTLLWCRR	11	Unmodified	_GVLLTLLWCRR_					0	0	0		ENST00000403263.5_1_2:206927768-206950703:-|nuORF;ENST00000414320.1_3_2:206927768-206950680:-|nuORF	ENST00000403263.5_1_2:206927768-206950703:-|nuORF	ENST00000403263.5_1_2:206927768-206950703:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	443.9317932128906	3	443.932309	1328.7751	0.77556	0.0003443	-0.82004	-0.00036404	-0.044479	-1.9746E-05	443.93184408383087	34.262	1.1509	31.473	31.2	32.351	-2.7881					58	22	3	0	0	0	0.72472	1	1025	1025		19.263	0	1	213640			15247	11439	12390	12410	16872	16872					0.12385966504371027
GVLLTTPLL	9	Unmodified	_GVLLTTPLL_					0	0	0			REV__nc|ENSG00000173264|Q96N19-5|GPR137	REV__nc|ENSG00000173264|Q96N19-5|GPR137	MULTI-MSMS	OvCa9_classI_Rep2	2	463.7979736328125	2	463.799686	925.584819	0.21037	9.7568E-05	-3.9036	-0.0018105	-3.6932	-0.0017129	463.7978667804196	70.561	4.2201	67.99	67.714	71.934	-2.5707					173	80	4	0	0	0	0.53957	1	5711	5711		38.806	3.6054	1	2590100	+		15248	21761	12391	12411	16873	16873					0.11905003113804469
GVLLTTPLL	9	Unmodified	_GVLLTTPLL_					0	0	0			REV__nc|ENSG00000173264|Q96N19-5|GPR137	REV__nc|ENSG00000173264|Q96N19-5|GPR137	MULTI-MSMS	OvCa9_classI_Rep3	3	463.7988586425781	2	463.799686	925.584819	0.29403	0.00013637	-3.7598	-0.0017438	-3.4658	-0.0016074	463.7979721487958	70.79	6.0908	68.07	67.699	73.79	-2.7196					279	121	5	0	0	0	0.44294	2	3300	3293;3300		47.916	8.8941	1	3593600	+		15249	21761	12391	12411	16874;16875	16875					0.11905003113804469
GVLLTTPLL	9	Unmodified	_GVLLTTPLL_					0	0	0			REV__nc|ENSG00000173264|Q96N19-5|GPR137	REV__nc|ENSG00000173264|Q96N19-5|GPR137	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.79901123046875	2	463.799686	925.584819	-1.4154	-0.00065646	-2.4017	-0.0011139	-3.8171	-0.0017704	463.7985594679424	71.828	2.2794	68.371	68.074	70.354	-3.4563					134	46	4	0	0	0	0.52083	1	5503	5503		40.573	0	1	2935000	+		15250	21761	12391	12411	16876	16876					0.11905003113804469
GVLMFKKR	8	Unmodified	_GVLMFKKR_					0	0	0		nc|ENSG00000166317|Q9H987-2|SYNPO2L;ENSG00000166317|ENST00000394810|SYNPO2L;nc|ENSG00000172403|Q9UMS6-4|SYNPO2;ENSG00000172403|ENST00000307142|SYNPO2;nc|ENSG00000172403|Q9UMS6|SYNPO2;nc|ENSG00000172403|Q9UMS6-3|SYNPO2	nc|ENSG00000166317|Q9H987-2|SYNPO2L;nc|ENSG00000172403|Q9UMS6-4|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	MULTI-MSMS	OvCa99_classI_Rep5	1	489.8011169433594	2	489.799497	977.584442	0.35762	0.00017516	-0.64871	-0.00031774	-0.29109	-0.00014258	489.79900077673824	160.64	3.1469	160.64	159.38	162.53	0					149	62	3	0	0	0	0.69415	1	19042	19042		44.531	7.5026	1	288360			15251	7296;6663	12392	12412	16877	16877					0.09475304912962201
GVLMKVGEA	9	Unmodified	_GVLMKVGEA_					0	0	0		ENST00000518233.5_1_8:86244700-86255007:-|nuORF;ENSG00000133742|ENST00000523022|CA1	ENST00000518233.5_1_8:86244700-86255007:-|nuORF	ENST00000518233.5_1_8:86244700-86255007:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	452.25396728515625	2	452.252046	902.489538	0.8613	0.00038952	3.2498	0.0014697	4.1111	0.0018593	452.2534208986577	33.657	1.7812	30.947	30.722	32.503	-2.7097					88	35	4	0	0	0	0.51865	1	1252	1252		40.778	2.9666	1	1170300			15252	4235	12393	12413	16878	16878					0.0343932665111879
GVLNRPVQIF	10	Unmodified	_GVLNRPVQIF_					0	0	0			REV__FXR1|p.T411Nfs*4|1|0.24|ENSG00000114416|chr3:180968080-180968081|-/A|frameshift_variant	REV__FXR1|p.T411Nfs*4|1|0.24|ENSG00000114416|chr3:180968080-180968081|-/A|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	571.8368530273438	2	571.837665	1141.66078	-0.60983	-0.00034872	-3.6963	-0.0021137	-4.3061	-0.0024624	571.835467851504	67.882	0.58777	67.882	67.604	68.192	0					40	14	4	0	0	0	0.53885	1	6367	6367		49.442	1.7842	1	4134100	+		15253	18186	12394	12414	16879	16879					0.09561400013922139
GVLNVPANP	9	Unmodified	_GVLNVPANP_					0	0	0		tr|A0A553SJY9|A0A553SJY9_NIACIIsocitratedehydrogenase[NADP]OS=NialliacirculansOX=1397GN=CEQ21_17855PE=3SV=1	tr|A0A553SJY9|A0A553SJY9_NIACIIsocitratedehydrogenase[NADP]OS=NialliacirculansOX=1397GN=CEQ21_17855PE=3SV=1	tr|A0A553SJY9|A0A553SJY9_NIACIIsocitratedehydrogenase[NADP]OS=NialliacirculansOX=1397GN=CEQ21_17855PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	441.207275390625	2	440.747985	879.481417	1.7209	0.00075849	-1.029	-0.00045354	0.69189	0.00030495	440.7473472977911	45.483	0.64435	45.483	45.245	45.89	0					24	14	2	0	0	0	0.027462	1	3196	3196		21.96	15.224	1	205720			15254	33555	12395	12415	16880	16880					0.03685515725987898
GVLNYRLFGRI	11	Unmodified	_GVLNYRLFGRI_					0	0	0		tr|A0A7D6VT57|A0A7D6VT57_9CLOTPutativeABCexporterdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09330PE=4SV=1	tr|A0A7D6VT57|A0A7D6VT57_9CLOTPutativeABCexporterdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09330PE=4SV=1	tr|A0A7D6VT57|A0A7D6VT57_9CLOTPutativeABCexporterdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09330PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	437.2735900878906	3	436.59094	1306.75099	0.99116	0.00043273	-4.1142	-0.0017962	-3.123	-0.0013635	436.5890926980802	69.595	1.3951	66.781	66.312	67.707	-2.8143					67	27	4	0	0	0	0.025487	1	3066	3066		46.457	16.906	1	178090			15255	35088	12396	12416	16881	16881					0.10988449342357853
GVLNYRLFGRI	11	Unmodified	_GVLNYRLFGRI_					0	0	0		tr|A0A7D6VT57|A0A7D6VT57_9CLOTPutativeABCexporterdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09330PE=4SV=1	tr|A0A7D6VT57|A0A7D6VT57_9CLOTPutativeABCexporterdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09330PE=4SV=1	tr|A0A7D6VT57|A0A7D6VT57_9CLOTPutativeABCexporterdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09330PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	436.59094	1306.75099	0.0011823	5.1618E-07	-3.2282	-0.0014094	-3.227	-0.0014089	436.5894981885791	69.327	1.0471	66.707	66.416	67.463	-2.6203	-0.12434	0.00055582	NaN	46.457	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87949			15256	35088	12396	12416							0.10988449342357853
GVLRAEQQI	9	Unmodified	_GVLRAEQQI_					0	0	0		NCOA4|p.R517Gfs*12|1|0.42|ENSG00000266412|chr10:46010372-46010373|-/CC|frameshift_variant;ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-4|NCOA4;nc|ENSG00000266412|Q13772-2|NCOA4	NCOA4|p.R517Gfs*12|1|0.42|ENSG00000266412|chr10:46010372-46010373|-/CC|frameshift_variant	NCOA4|p.R517Gfs*12|1|0.42|ENSG00000266412|chr10:46010372-46010373|-/CC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	507.2911071777344	2	507.290548	1012.56654	0.10249	5.1994E-05	-0.1536	-7.792E-05	-0.051108	-2.5926E-05	507.2904254245479	64.957	0.92464	64.957	64.461	65.385	0					61	22	5	0	0	0	0.094616	1	5929	5929		98.629	10.452	1	4732500			15257	9528	12397	12417	16882	16882					0.060762611917994036
GVLRQQLVV	9	Unmodified	_GVLRQQLVV_					0	0	0		ENSG00000198642|ENST00000359039|KLHL9;KLHL13|p.A472Efs*12|1|0.04|ENSG00000003096|chrX:117901898-117901899|-/ATTAAAGTGAGACTTCTTCCTAAATT|frameshift_variant;nc|ENSG00000003096|Q9P2N7-2|KLHL13;ENSG00000003096|ENST00000540167|KLHL13;nc|ENSG00000003096|Q9P2N7-4|KLHL13;nc|ENSG00000003096|Q9P2N7|KLHL13;nc|ENSG00000003096|Q9P2N7-5|KLHL13	ENSG00000198642|ENST00000359039|KLHL9	ENSG00000198642|ENST00000359039|KLHL9	MULTI-MSMS	OvCa99_classI_Rep5	1	506.31982421875	2	506.319109	1010.62366	2.4421	0.0012365	-0.75238	-0.00038094	1.6897	0.00085555	506.3186481168508	84.581	1.0311	84.581	84.303	85.334	0					70	24	5	0	0	0	0.14739	2	8860	8832;8860		85.359	18.471	1	6783100			15258	8839	12398	12418	16883;16884	16884					0.11877728468175519
GVLSRILL	8	Unmodified	_GVLSRILL_					0	0	0			REV__ENSG00000112659|ENST00000252050|CUL9	REV__ENSG00000112659|ENST00000252050|CUL9	MULTI-MSMS	OvCa99_classI_Rep5	1	435.793701171875	2	435.792195	869.569838	0.047655	2.0768E-05	0.011412	4.9734E-06	0.059067	2.5741E-05	435.7921196888168	66.293	0.47244	66.293	66.059	66.531	0					25	11	3	0	0	0	0.6962	1	6146	6146		44.117	3.5442	1	660100	+		15259	18111	12399	12419	16885	16885					0.12983556036476784
GVLVFGFVI	9	Unmodified	_GVLVFGFVI_					0	0	0			REV__tr|A0A7D6VXQ0|A0A7D6VXQ0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12825PE=4SV=1	REV__tr|A0A7D6VXQ0|A0A7D6VXQ0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12825PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	475.7867736816406	2	475.789121	949.56369	-1.1235	-0.00053453	-3.1454	-0.0014966	-4.2689	-0.0020311	475.7874263780674	139.39	1.0332	139.16	138.81	139.84	-0.22696					43	20	3	0	0	0	0.61768	2	13929	13929;13949		29.842	4.3914	1	86387	+		15260	31785	12400	12420	16886;16887	16886					0.08689037804947475
GVLVIVEAVGA	11	Unmodified	_GVLVIVEAVGA_					0	0	0			REV__ENST00000471654.1_1_2:23914526-23929531:+|nuORF	REV__ENST00000471654.1_1_2:23914526-23929531:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	513.815185546875	2	513.813325	1025.6121	-0.17927	-9.2113E-05	3.3719	0.0017325	3.1926	0.0016404	513.8151245610528	74.922	2.6818	72.512	71.994	74.676	-2.4106					138	52	4	0	0	0	0.56722	1	3739	3739		47.657	3.2801	1	3292300	+		15261	18467	12401	12421	16888	16888					0.10031486654179389
GVLVMKSLPM	10	Unmodified	_GVLVMKSLPM_					0	0	0		L1PA7_dup282|chr1:88818677-88820142:+|1.0289078366989055|0.4624574098713206|1.15|428.0|85|3|anti-sense;L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|258|2|anti-sense	L1PA7_dup282|chr1:88818677-88820142:+|1.0289078366989055|0.4624574098713206|1.15|428.0|85|3|anti-sense	L1PA7_dup282|chr1:88818677-88820142:+|1.0289078366989055|0.4624574098713206|1.15|428.0|85|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	537.8065185546875	2	537.806131	1073.59771	1.6	0.00086048	-1.4975	-0.00080537	0.10246	5.5104E-05	537.8052358679963	69.946	1.7589	67.226	66.906	68.665	-2.7196					92	34	4	0	0	0	0.58067	1	3165	3165		44.377	6.5657	1	888370			15262	14737	12402	12422	16889	16889					0.06385374910018982
GVMPLPQH	8	Unmodified	_GVMPLPQH_					0	0	0			REV__ENST00000227322.7_2_11:116649484-116649634:-|nuORF	REV__ENST00000227322.7_2_11:116649484-116649634:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	439.7312316894531	2	439.73128	877.448008	2.8222	0.001241	-3.7414	-0.0016452	-0.91915	-0.00040418	439.7293894372334	81.787	0.85747	81.787	81.493	82.351	0					47	20	3	0	0	0	0.63104	1	8437	8437		57.453	7.4281	1	1721200	+		15263	23771	12403	12423	16890	16890					0.00438190682439199
GVMVTASHNPE	11	Unmodified	_GVMVTASHNPE_					0	0	0		ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3;ENST00000515333.1_1_6:83900509-83900731:-|nuORF	ENSG00000013375|ENST00000513973|PGM3	ENSG00000013375|ENST00000513973|PGM3	MULTI-MSMS	OvCa9_classI_Rep3	3	571.2695922851562	2	571.268955	1140.52336	1.0495	0.00059955	-0.76824	-0.00043887	0.28126	0.00016068	571.2685483979973	123.92	1.2425	122.88	122.51	123.75	-1.0377					61	23	3	0	0	0	0.65947	1	9589	9589		39.253	3.6345	1	128660			15264	985	12404	12424	16891	16891					-0.04128296647786556
GVNIHRAF	8	Unmodified	_GVNIHRAF_					0	0	0		nc|nan|Q96M02|C10orf90;ENSG00000154493|ENST00000488181|C10orf90;nc|nan|Q96M02-2|C10orf90;ENST00000368674.5_1_10:128191356-128211334:-|nuORF	nc|nan|Q96M02|C10orf90	nc|nan|Q96M02|C10orf90	MULTI-MSMS	OvCa99_classI_Rep5	1	457.2533874511719	2	457.253769	912.492984	-0.60659	-0.00027737	0.87372	0.00039951	0.26713	0.00012215	457.25400257255	28.547	0.34867	28.547	28.39	28.739	0					16	6	4	0	0	0	0.73288	1	943	943		35.201	6.0512	1	111910			15265	5742	12405	12425	16892	16892					0.03323757539988037
GVNINRLF	8	Unmodified	_GVNINRLF_					0	0	0			REV__ENST00000526525.1_1_11:126139211-126143019:+|nuORF	REV__ENST00000526525.1_1_11:126139211-126143019:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	466.7706298828125	2	466.769252	931.52395	2.0325	0.00094872	-0.56774	-0.000265	1.4648	0.00068372	466.76926594166116	90.491	3.1615	90.491	90.143	93.305	0					192	76	6	0	0	0	0.69415	1	9779	9779		44.531	2.0566	1	25081000	+		15266	27140	12406	12426	16893	16893					0.05544910854223417
GVNKDSYLI	9	Unmodified	_GVNKDSYLI_					0	0	0		PSMC3|p.L150Q|1|0.15|ENSG00000165916|chr11:47424433-47424433|A/T|missense_variant;ENSG00000165916|ENST00000298852|PSMC3	PSMC3|p.L150Q|1|0.15|ENSG00000165916|chr11:47424433-47424433|A/T|missense_variant	PSMC3|p.L150Q|1|0.15|ENSG00000165916|chr11:47424433-47424433|A/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	504.7726745605469	2	504.771657	1007.52876	2.2501	0.0011358	-0.82614	-0.00041701	1.424	0.00071878	504.77125600811877	76.244	0.80412	76.244	75.913	76.718	0					56	19	4	0	0	0	0.070405	1	7630	7630		107.01	24.702	1	9641700			15267	6612	12407	12427	16894	16894					0.025297502063153843
GVNKSRGAVVV	11	Unmodified	_GVNKSRGAVVV_					0	0	0			REV__nc|ENSG00000065911|P13995-2|MTHFD2	REV__nc|ENSG00000065911|P13995-2|MTHFD2	MULTI-MSMS	OvCa9_classI_Rep2	2	543.3236083984375	2	543.324922	1084.63529	0.054576	2.9652E-05	-0.27875	-0.00015145	-0.22418	-0.0001218	543.3247413975346	64.933	1.7204	62.208	61.917	63.637	-2.7245					94	33	5	0	0	0	0.68059	1	5002	5002		36.318	3.5052	1	1066900	+		15268	16804	12408	12428	16895	16895					0.09635925491511443
GVNYLKKTYNL	11	Unmodified	_GVNYLKKTYNL_					0	0	0			REV__tr|A0A7D6ZV30|A0A7D6ZV30_9CLOTPucRfamilytranscriptionalregulatorligand-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13755PE=4SV=1	REV__tr|A0A7D6ZV30|A0A7D6ZV30_9CLOTPucRfamilytranscriptionalregulatorligand-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13755PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	438.246826171875	3	438.246839	1311.71869	1.181	0.00051758	-1.0337	-0.00045303	0.14727	6.4542E-05	438.2463941604818	43.965	2.0387	41.255	40.758	42.797	-2.7097					118	40	4	0	0	0	0.69424	1	2507	2507		31.634	5.5709	1	1317400	+		15269	32236	12409	12429	16896	16896					0.07529617148725265
GVPDKARYHLH	11	Unmodified	_GVPDKARYHLH_					0	0	0			REV__ENST00000475917.1_1_6:31510065-31514336:-|nuORF	REV__ENST00000475917.1_1_6:31510065-31514336:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	431.5669860839844	3	431.566794	1291.67855	-0.21835	-9.4231E-05	-0.27669	-0.00011941	-0.49503	-0.00021364	431.5667341351985	72.463	2.7719	70.009	69.644	72.416	-2.4533					174	52	5	0	0	0	0.57194	3	5891	5861;5885;5891		47.228	6.1426	1	1932400	+		15270	26361	12410	12430	16897;16898;16899	16899					0.04438115268817455
GVPDVRWLILE	11	Unmodified	_GVPDVRWLILE_					0	0	0			REV__nc|ENSG00000172869|Q9Y485|DMXL1	REV__nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-MSMS	OvCa9_classI_Rep2	2	432.91448974609375	3	432.915201	1295.72377	-1.1041	-0.00047799	1.0565	0.00045737	-0.047623	-2.0617E-05	432.9158567399814	54.785	2.7829	51.971	51.473	54.256	-2.8139					169	55	5	0	0	0	0.66495	1	3795	3795		38.754	6.7195	1	2816800	+		15271	21731	12411	12431	16900	16900					0.08773921011334096
GVPEAVQLIN	10	Unmodified	_GVPEAVQLIN_					0	0	0		ROS1|p.T1963Dfs*18|1|0.07|ENSG00000047936|chr6:117319921-117319922|-/GGCATGTTTGAAGAAAAATGATTGCCTGATAGGTC|frameshift_variant;ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1	ROS1|p.T1963Dfs*18|1|0.07|ENSG00000047936|chr6:117319921-117319922|-/GGCATGTTTGAAGAAAAATGATTGCCTGATAGGTC|frameshift_variant	ROS1|p.T1963Dfs*18|1|0.07|ENSG00000047936|chr6:117319921-117319922|-/GGCATGTTTGAAGAAAAATGATTGCCTGATAGGTC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.8422241210938	2	520.292756	1038.57096	0.39923	0.00020772	1.9916	0.0010362	2.3908	0.0012439	520.7931838382622	103.79	0.57631	102.36	102.13	102.71	-1.4347					18	10	2	0	0	0	0.026494	1	7210	7210		67.494	0	1	11594			15272	1153	12412	12432	16901	16901					0.05321725614726347
GVPEPRAAP	9	Unmodified	_GVPEPRAAP_					0	0	0		nc|ENSG00000243449|Q5BLP8-3|NICOL1;nc|ENSG00000243449|Q5BLP8-2|NICOL1	nc|ENSG00000243449|Q5BLP8-3|NICOL1	nc|ENSG00000243449|Q5BLP8-3|NICOL1	MULTI-SECPEP	OvCa9_classI_Rep2	2	448.24072265625	2	447.245609	892.476666	1.5398	0.00068867	-1.4344	-0.00064155	0.10536	4.712E-05	447.24480853598595	32.957	0.89684	30.248	30.025	30.922	-2.7097					37	17	4	0	0	0	0.027462	1	1170	1170		24.203	4.8428	1	120390			15273	15343	12413	12433	16902	16902					0.026126315832243563
GVPFPKNFM	9	Unmodified	_GVPFPKNFM_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.3259887695312	2	518.767863	1035.52117	-1.0232	-0.00053078	1.8935	0.00098227	0.87031	0.00045149	518.7685829701667	70.478	0.3906	66.997	66.836	67.227	-3.4812					11	7	2	0	0	0	0.027433	1	5339	5339		68.485	11.764	1	16745			15274	3052	12414	12434	16903	16903					0.004833194050434031
GVPGKKGKV	9	Unmodified	_GVPGKKGKV_					0	0	0			REV__ENSG00000173714|ENST00000311378|WFIKKN2	REV__ENSG00000173714|ENST00000311378|WFIKKN2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	435.268798828125	2	435.281995	868.549437	-0.1301	-5.6631E-05	4.1033	0.0017861	3.9732	0.0017295	435.28334110150456	40.439	0.52584	37.485	37.263	37.789	-2.9541					11	9	2	0	0	0	0.027462	1	1725	1725		17.365	7.0997	1	7574.7	+		15275	21796	12415	12435	16904	16904					0.10990385376669565
GVPGLHLRK	9	Unmodified	_GVPGLHLRK_					0	0	0			REV__ENST00000531756.5_1_11:74862426-74914042:+|nuORF	REV__ENST00000531756.5_1_11:74862426-74914042:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	489.2916564941406	2	488.806168	975.597784	-0.17552	-8.5794E-05	-0.69287	-0.00033868	-0.86838	-0.00042447	488.8060164229932	59.814	1.5152	57.044	56.304	57.819	-2.7702					44	28	2	0	0	0	0.027462	1	4432	4432		31.955	6.5047	1	25923	+		15276	19455	12416	12436	16905	16905					0.10900879016560339
GVPGQKAAGLC	11	Carbamidomethyl (C)	_GVPGQKAAGLC(Carbamidomethyl (C))_	GVPGQKAAGLC(1)		GVPGQKAAGLC(42)		0	1	0			REV__nc|ENSG00000285188|Q08493-2|PDE4C	REV__nc|ENSG00000285188|Q08493-2|PDE4C	MULTI-MSMS	OvCa9_classI_Rep2	2	529.2781982421875	2	529.276583	1056.53861	0.99244	0.00052527	2.5626	0.0013563	3.555	0.0018816	529.2777207922776	28.873	0.72992	26.164	25.952	26.682	-2.7097					30	15	3	0	0	0	0.62497	1	646	646		42.396	9.5837	1	73554	+		15277	17742	12417	12437	16906	16906	196				0.012606149400653521
GVPGRAPPAHH	11	Unmodified	_GVPGRAPPAHH_					0	0	0		ENST00000491547.1_1_1:14925349-15387014:+|nuORF	ENST00000491547.1_1_1:14925349-15387014:+|nuORF	ENST00000491547.1_1_1:14925349-15387014:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.2948608398438	2	548.293956	1094.57336	0.52054	0.00028541	1.4282	0.00078307	1.9487	0.0010685	548.2950889669573	33.486	4.8857	30.698	30.11	34.996	-2.7881					278	97	6	0	0	0	0.69455	1	1081	1081		31.53	1.0262	1	7055400			15278	12712	12418	12438	16907	16907					0.02985618863021955
GVPIAILIMV	10	Unmodified	_GVPIAILIMV_					0	0	0		nc|ENSG00000164889|P04920-2|SLC4A2;nc|ENSG00000164889|P04920-3|SLC4A2;ENSG00000164889|ENST00000413384|SLC4A2;ENST00000472204.1_1_7:150771467-150771665:+|nuORF	nc|ENSG00000164889|P04920-2|SLC4A2	nc|ENSG00000164889|P04920-2|SLC4A2	MULTI-MSMS	OvCa9_classI_Rep3	3	513.8248901367188	2	513.325014	1024.63547	1.1851	0.00060836	-0.96302	-0.00049434	0.22213	0.00011402	513.8246530993847	67.449	2.102	64.562	64.137	66.239	-2.8873					146	41	6	0	0	0	0.79715	1	2825	2825		19.36	0	1	2025700			15279	6495	12419	12439	16908	16908					0.12414209167150148
GVPICLGCGPI	11	Unmodified	_GVPICLGCGPI_					0	0	0			REV__ENST00000244533.7_2_6:43402405-43403837:+|nuORF	REV__ENST00000244533.7_2_6:43402405-43403837:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	514.7681274414062	2	514.767006	1027.51946	3.6733	0.0018909	-0.36043	-0.00018554	3.3128	0.0017053	514.7667501531362	25.363	0.83264	22.654	22.479	23.311	-2.7097					28	18	2	0	0	0	0.69331	1	240	240		31.955	6.5047	1	64230	+		15280	23829	12420	12440	16909	16909					0.006799423247912273
GVPILPQPH	9	Unmodified	_GVPILPQPH_					0	0	0		ENSG00000197980|ENST00000356539|LEKR1	ENSG00000197980|ENST00000356539|LEKR1	ENSG00000197980|ENST00000356539|LEKR1	MULTI-MSMS	OvCa9_classI_Rep2	2	479.2774353027344	2	479.279452	956.544351	-1.3781	-0.00066051	-2.7764	-0.0013307	-4.1545	-0.0019912	479.2778548190663	50.558	1.983	47.764	47.232	49.215	-2.794					76	39	3	0	0	0	0.42057	1	3269	3269		50.025	0.58299	1	369850			15281	8771	12421	12441	16910	16910					0.0643408151404401
GVPILPQPH	9	Unmodified	_GVPILPQPH_					0	0	0		ENSG00000197980|ENST00000356539|LEKR1	ENSG00000197980|ENST00000356539|LEKR1	ENSG00000197980|ENST00000356539|LEKR1	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.2772216796875	2	479.279452	956.544351	-0.86057	-0.00041245	-3.9158	-0.0018768	-4.7764	-0.0022892	479.27732715521614	50.853	1.6298	47.679	46.995	48.624	-3.1734					79	31	4	0	0	0	0.27546	2	2942	2942;2954		65.803	26.55	1	1528000			15282	8771	12421	12441	16911;16912	16911					0.0643408151404401
GVPLISIPEL	10	Unmodified	_GVPLISIPEL_					0	0	0			REV__tr|A0A7D6VMJ4|A0A7D6VMJ4_9CLOTNitroreductasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15665PE=3SV=1	REV__tr|A0A7D6VMJ4|A0A7D6VMJ4_9CLOTNitroreductasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15665PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.3328857421875	2	519.3157	1036.61685	0.45161	0.00023453	2.0474	0.0010633	2.499	0.0012978	519.3169333749261	72.519	0.24841	69.916	69.72	69.968	-2.6023					7	4	2	0	0	0	0.026665	1	3462	3462		51.335	0	1	13162	+		15283	31135	12422	12442	16913	16913					0.10000370796933566
GVPLSYLLS	9	Unmodified	_GVPLSYLLS_					0	0	0		ENSG00000062822|ENST00000440232|POLD1	ENSG00000062822|ENST00000440232|POLD1	ENSG00000062822|ENST00000440232|POLD1	MULTI-MSMS	OvCa9_classI_Rep2	2	474.7721862792969	2	474.773668	947.532783	-2.2434	-0.0010651	-0.51665	-0.00024529	-2.7601	-0.0013104	474.77329814512956	37.51	1.38	34.8	34.287	35.667	-2.7097					69	27	4	0	0	0	0.59983	1	1690	1690		31.955	1.4512	1	277560			15284	1281	12423	12443	16914	16914					0.056918397000458754
GVPPRLLQR	9	Unmodified	_GVPPRLLQR_					0	0	0		ENST00000562374.1_3_16:75656785-75656947:-|nuORF	ENST00000562374.1_3_16:75656785-75656947:-|nuORF	ENST00000562374.1_3_16:75656785-75656947:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	518.325439453125	2	518.324725	1034.6349	1.0131	0.00052512	-1.7305	-0.00089695	-0.71737	-0.00037183	518.3238379693353	69.479	3.4447	66.665	66.312	69.756	-2.8144					184	68	5	0	0	0	0.61208	1	3079	3079		30.504	1.3541	1	3734200			15285	13771	12424	12444	16915	16915					0.11896550562300945
GVPPWSHS	8	Unmodified	_GVPPWSHS_					0	0	0		ENST00000334454.10_1_14:23502854-23503715:-|nuORF	ENST00000334454.10_1_14:23502854-23503715:-|nuORF	ENST00000334454.10_1_14:23502854-23503715:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	433.2273864746094	2	433.711402	865.408252	0.15972	6.9274E-05	3.8272	0.0016599	3.9869	0.0017292	433.7129766964672	56.022	0.73363	56.022	55.764	56.498	0					24	17	2	0	0	0	0.028476	1	4628	4628		21.702	0	1	360360			15286	10482	12425	12445	16916	16916					-0.029836129966270164
GVPQRIVRGYQ	11	Unmodified	_GVPQRIVRGYQ_					0	0	0			REV__nc|ENSG00000189221|P21397-2|MAOA	REV__nc|ENSG00000189221|P21397-2|MAOA	MULTI-MSMS	OvCa9_classI_Rep3	3	424.910400390625	3	424.910561	1271.70985	1.7676	0.00075109	-1.9367	-0.00082293	-0.16909	-7.1846E-05	424.90976624626023	65.471	1.3717	62.526	62.148	63.519	-2.9459					98	26	5	0	0	0	0.52474	1	2603	2603		51.528	16.35	1	905110	+		15287	22768	12426	12446	16917	16917					0.08486688302878065
GVPRLLSRL	9	Unmodified	_GVPRLLSRL_					0	0	0		ENST00000339364.9_1_10:98469376-98469727:-|nuORF	ENST00000339364.9_1_10:98469376-98469727:-|nuORF	ENST00000339364.9_1_10:98469376-98469727:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.827880859375	2	505.827101	1009.63965	-0.3073	-0.00015544	-0.2138	-0.00010814	-0.5211	-0.00026358	505.82687914944904	78.368	2.4922	75.551	75.067	77.559	-2.8165					106	51	4	0	0	0	0.3249	1	6313	6313		60.118	0	1	1172000			15288	10548	12427	12447	16918	16918					0.13521434705069169
GVPRRQEAVKA	11	Unmodified	_GVPRRQEAVKA_					0	0	0			REV__ENST00000459857.5_1_22:45072965-45122509:+|nuORF	REV__ENST00000459857.5_1_22:45072965-45122509:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	605.8552856445312	2	605.854378	1209.6942	4.1393	0.0025078	-2.283	-0.0013832	1.8563	0.0011247	605.852935555119	133.3	2.5623	131.77	131.46	134.02	-1.5257					111	51	4	0	0	0	0.34051	1	12864	12864		65.465	3.7741	1	751530	+		15289	26066	12428	12448	16919	16919					0.09774401785853115
GVPRRSVV	8	Unmodified	_GVPRRSVV_					0	0	0			REV__ENST00000232974.10_1_3:42700391-42700559:+|nuORF	REV__ENST00000232974.10_1_3:42700391-42700559:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	435.2695007324219	2	435.269419	868.524284	-0.1815	-7.9E-05	-1.073	-0.00046705	-1.2545	-0.00054605	435.26868248288156	40.381	1.8146	37.427	37.012	38.827	-2.9541					94	34	4	0	0	0	0.68714	2	1760	1725;1760		45.952	8.7928	1	1438300	+		15290	23794	12429	12449	16920;16921	16921					0.08476330574092117
GVPRTPSRT	9	Unmodified	_GVPRTPSRT_					0	0	0		ENST00000488997.1_1_2:242752523-242755987:+|nuORF;ENSG00000204099|ENST00000407683|NEU4;nc|ENSG00000204099|Q8WWR8-2|NEU4;nc|ENSG00000204099|Q8WWR8-3|NEU4	ENST00000488997.1_1_2:242752523-242755987:+|nuORF	ENST00000488997.1_1_2:242752523-242755987:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.77587890625	2	485.775065	969.535577	0.38187	0.0001855	-0.52226	-0.0002537	-0.14039	-6.8198E-05	485.77462840678544	38.4	1.1396	35.474	35.156	36.296	-2.9264					42	22	3	0	0	0	0.44568	1	1487	1487		47.657	1.6851	1	132680			15291	8947	12430	12450	16922	16922					0.04959107877573388
GVPRTPSRT	9	Unmodified	_GVPRTPSRT_					0	0	0		ENST00000488997.1_1_2:242752523-242755987:+|nuORF;ENSG00000204099|ENST00000407683|NEU4;nc|ENSG00000204099|Q8WWR8-2|NEU4;nc|ENSG00000204099|Q8WWR8-3|NEU4	ENST00000488997.1_1_2:242752523-242755987:+|nuORF	ENST00000488997.1_1_2:242752523-242755987:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	485.775065	969.535577	-1.4142	-0.000687	1.5072	0.00073214	0.092907	4.5132E-05	485.77557941562276	38.414	0.64294	35.704	35.419	36.062	-2.7097	0.11506	0.0016022	NaN	47.657	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28790			15292	8947	12430	12450							0.04959107877573388
GVPSRQLVF	9	Unmodified	_GVPSRQLVF_					0	0	0			REV__ENST00000472519.5_1_2:71300598-71303116:+|nuORF	REV__ENST00000472519.5_1_2:71300598-71303116:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	501.79205322265625	2	501.790184	1001.56581	-1.2838	-0.00064422	4.2769	0.0021461	2.9931	0.0015019	501.79220196791607	48.181	1.5395	45.472	45.034	46.573	-2.7097					63	30	3	0	0	0	0.40667	1	2971	2971		51.335	3.6781	1	142540	+		15293	26313	12431	12451	16923	16923					0.06509466542752307
GVPSRQLVF	9	Unmodified	_GVPSRQLVF_					0	0	0			REV__ENST00000472519.5_1_2:71300598-71303116:+|nuORF	REV__ENST00000472519.5_1_2:71300598-71303116:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.79339599609375	2	501.790184	1001.56581	-1.2198	-0.00061207	4.3277	0.0021716	3.1079	0.0015595	501.7922584905618	48.531	1.2432	45.423	44.938	46.181	-3.1077					66	23	4	0	0	0	0.21395	1	2677	2677		73.975	13.681	1	724700	+		15294	26313	12431	12451	16924	16924					0.06509466542752307
GVPVLHLIST	10	Unmodified	_GVPVLHLIST_					0	0	0		nc|ENSG00000011478|Q9NXS2-3|QPCTL;ENSG00000011478|ENST00000012049|QPCTL	nc|ENSG00000011478|Q9NXS2-3|QPCTL	nc|ENSG00000011478|Q9NXS2-3|QPCTL	MULTI-MSMS	OvCa9_classI_Rep2	2	518.3134765625	2	518.313492	1034.61243	1.4676	0.00076068	-4.3677	-0.0022638	-2.9001	-0.0015031	518.3111282490884	29.379	1.2492	26.669	26.407	27.656	-2.7097					55	25	3	0	0	0	0.75594	1	702	702		24.203	1.1603	1	95242			15295	967	12432	12452	16925	16925					0.09650906374031365
GVPVQLGRLR	10	Unmodified	_GVPVQLGRLR_					0	0	0			REV__ENSG00000178795|ENST00000315938|GDPD4	REV__ENSG00000178795|ENST00000315938|GDPD4	MULTI-MSMS	OvCa9_classI_Rep3	3	547.842529296875	2	547.843282	1093.67201	-0.1914	-0.00010486	-1.5293	-0.00083784	-1.7207	-0.0009427	547.8423180016147	71.547	3.227	68.945	68.229	71.456	-2.6023					126	61	3	0	0	0	0.66721	1	3336	3336		34.173	1.3601	1	1856100	+		15296	22081	12433	12453	16926	16926					0.12892222108075657
GVQFKDKL	8	Unmodified	_GVQFKDKL_					0	0	0			REV__ENST00000532826.5_1_1:236689310-236702461:+|nuORF	REV__ENST00000532826.5_1_1:236689310-236702461:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	467.770263671875	2	467.77146	933.528367	0.35334	0.00016528	-3.454	-0.0016157	-3.1006	-0.0014504	467.76972173276937	30.873	0.8863	28.163	27.903	28.789	-2.7097					36	17	3	0	0	0	0.74229	1	885	885		30.504	3.7075	1	69508	+		15297	27242	12434	12454	16927	16927					0.058943752771256186
GVQKLVAKV	9	Unmodified	_GVQKLVAKV_					0	0	0		ENSG00000177303|ENST00000321617|CASKIN2	ENSG00000177303|ENST00000321617|CASKIN2	ENSG00000177303|ENST00000321617|CASKIN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.3107604980469	2	471.310752	940.606951	1.3289	0.00062632	-1.6854	-0.00079433	-0.35646	-0.000168	471.3099028886094	32.057	2.5601	29.362	28.732	31.293	-2.6954					224	67	4	0	0	0	0.52083	1	812	812		40.573	0	1	1074400			15298	7670	12435	12455	16928	16928					0.13427227582224077
GVQLPGSYSGH	11	Unmodified	_GVQLPGSYSGH_					0	0	0		ENSG00000137270|ENST00000259803|GCM1	ENSG00000137270|ENST00000259803|GCM1	ENSG00000137270|ENST00000259803|GCM1	MULTI-MSMS	OvCa9_classI_Rep2	2	551.271484375	2	551.269813	1100.52507	-0.34359	-0.00018941	3.2477	0.0017904	2.9041	0.001601	551.2715063100039	55.708	1.14	52.904	52.482	53.622	-2.804					52	22	3	0	0	0	0.70142	1	3901	3901		29.17	2.4771	1	174720			15299	4573	12436	12456	16929	16929					-0.021169195674929142
GVQPRHQLFWR	11	Unmodified	_GVQPRHQLFWR_					0	0	0			REV__ENST00000504720.5_1_5:79374662-79378961:+|nuORF	REV__ENST00000504720.5_1_5:79374662-79378961:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.6084289550781	3	475.261705	1422.76329	0.21337	0.00010141	-0.59356	-0.0002821	-0.38019	-0.00018069	475.26295883187476	80.578	1.4429	78.883	78.074	79.517	-1.6951					45	28	4	0	0	0	0.025818	1	6807	6807		23.378	13.274	1	64063	+	+	15300	16170	12437	12457	16930	16930					0.06881485805388365
GVQRHWFL	8	Unmodified	_GVQRHWFL_					0	0	0		ENST00000501173.6_1_5:127302595-127398182:-|nuORF	ENST00000501173.6_1_5:127302595-127398182:-|nuORF	ENST00000501173.6_1_5:127302595-127398182:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.603759765625	2	521.782693	1041.55083	-0.43059	-0.00022467	-1.0513	-0.00054855	-1.4819	-0.00077323	521.7803056760605	31.305	0.18955	31.305	31.171	31.361	0					5	3	2	0	0	0	0.028476	1	1266	1266		29.842	1.9593	1	7245.2			15301	12842	12438	12458	16931	16931					0.03172019465409903
GVREIVVCSV	10	Unmodified	_GVREIVVCSV_					0	0	0			REV__ENST00000489322.5_1_22:24224791-24226291:+|nuORF	REV__ENST00000489322.5_1_22:24224791-24226291:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	530.7910766601562	2	530.794609	1059.57467	-2.5847	-0.0013719	-4.3627	-0.0023157	-6.9474	-0.0036876	530.7922153115414	62.531	1.6878	59.777	59.093	60.781	-2.7541					56	32	2	0	0	0	0.73063	1	4710	4710		27.047	1.4733	1	272960	+		15302	19148	12439	12459	16932	16932					0.047260721169323006
GVRFYGRVLR	10	Unmodified	_GVRFYGRVLR_					0	0	0			REV__ENST00000199389.10_1_7:6098783-6098849:-|nuORF	REV__ENST00000199389.10_1_7:6098783-6098849:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	408.2447509765625	3	408.243763	1221.70946	1.1026	0.00045015	-1.3155	-0.00053704	-0.21285	-8.6896E-05	408.2432793118589	69.083	1.7129	69.083	68.815	70.528	0					118	41	5	0	0	0	0.43433	1	6562	6562		63.534	8.7575	1	36139000	+		15303	23695	12440	12460	16933	16933					0.10747313373690304
GVRLPLLRS	9	Unmodified	_GVRLPLLRS_					0	0	0			REV__ENST00000238081.7_1_2:9770567-9771075:-|nuORF	REV__ENST00000238081.7_1_2:9770567-9771075:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	505.82659912109375	2	505.827101	1009.63965	-1.2196	-0.00061688	0.87052	0.00044033	-0.34903	-0.00017655	505.8274041320969	77.702	2.9828	75.35	74.262	77.244	-2.3527					140	58	4	0	0	0	0.59259	1	4070	4070		32.812	2.3088	1	813550	+		15304	23813	12441	12461	16934	16934					0.13521434705080537
GVRPLPYRH	9	Unmodified	_GVRPLPYRH_					0	0	0		ENSG00000161328|ENST00000270115|LRRC56	ENSG00000161328|ENST00000270115|LRRC56	ENSG00000161328|ENST00000270115|LRRC56	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.802734375	2	547.814525	1093.6145	0.06956	3.8106E-05	3.7785	0.0020699	3.8481	0.002108	547.8162817896385	46.265	0.3896	46.265	46.112	46.501	0					11	8	2	0	0	0	0.027462	1	3257	3257		37.159	12.956	1	76041			15305	6126	12442	12462	16935	16935					0.07143379902504421
GVRSGQRLL	9	Unmodified	_GVRSGQRLL_					0	0	0		ENST00000578067.5_1_17:61776931-61777213:-|nuORF	ENST00000578067.5_1_17:61776931-61777213:-|nuORF	ENST00000578067.5_1_17:61776931-61777213:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2640686035156	2	493.298707	984.582862	-0.39563	-0.00019516	0.55084	0.00027173	0.15522	7.6567E-05	493.29878380879046	40.846	0.43867	40.846	40.711	41.149	0					14	9	3	0	0	0	0.027462	1	2538	2538		25.574	4.6271	1	70074			15306	13964	12443	12463	16936	16936					0.08995387148559075
GVRSVRPV	8	Unmodified	_GVRSVRPV_					0	0	0			REV__ENST00000260599.10_3_2:27309647-27309728:+|nuORF	REV__ENST00000260599.10_3_2:27309647-27309728:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	435.2694091796875	2	435.269419	868.524284	0.29131	0.0001268	-0.70002	-0.0003047	-0.40872	-0.0001779	435.26897806617785	40.282	1.3859	37.572	37.052	38.438	-2.7097					82	27	6	0	0	0	0.6962	1	2041	2041		44.117	5.3107	1	329020	+		15307	23929	12444	12464	16937	16937					0.08476330574092117
GVRTGKCS	8	Carbamidomethyl (C)	_GVRTGKC(Carbamidomethyl (C))S_	GVRTGKC(1)S		GVRTGKC(58)S		0	1	0		ENST00000554315.5_1_14:73753704-73876743:-|nuORF;nc|ENSG00000133961|P49757-8|NUMB;nc|ENSG00000133961|P49757-7|NUMB;nc|ENSG00000133961|P49757-6|NUMB;nc|ENSG00000133961|P49757-5|NUMB;nc|ENSG00000133961|P49757-4|NUMB;nc|ENSG00000133961|P49757-2|NUMB;nc|ENSG00000133961|P49757-3|NUMB;ENSG00000133961|ENST00000555238|NUMB	ENST00000554315.5_1_14:73753704-73876743:-|nuORF	ENST00000554315.5_1_14:73753704-73876743:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	432.72064208984375	2	432.721444	863.428335	0.6033	0.00026106	-2.8964	-0.0012533	-2.2931	-0.00099227	432.72008228696427	46.178	1.4429	46.178	45.979	47.422	0					80	32	4	0	0	0	0.62934	1	3258	3258		57.811	13.28	1	4835000			15308	4244	12445	12465	16938	16938	41				-0.008841853283115597
GVSALAKKFI	10	Unmodified	_GVSALAKKFI_					0	0	0			REV__tr|A0A553SLH6|A0A553SLH6_NIACISporulationproteinSpoOMOS=NialliacirculansOX=1397GN=CEQ21_20635PE=4SV=1	REV__tr|A0A553SLH6|A0A553SLH6_NIACISporulationproteinSpoOMOS=NialliacirculansOX=1397GN=CEQ21_20635PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3240356445312	2	517.32386	1032.63317	-0.51991	-0.00026896	-0.28143	-0.00014559	-0.80135	-0.00041456	517.3237144265391	103.88	2.5281	103.3	102.88	105.41	-0.57639					141	50	4	0	0	0	0.66721	1	9647	9647		34.173	0.65696	1	3512100	+		15309	30225	12446	12466	16939	16939					0.11815496753706611
GVSAVAHRI	9	Unmodified	_GVSAVAHRI_					0	0	0		ENST00000533005.5_1_11:67811775-67815272:+|nuORF;nc|ENSG00000110719|Q13488-2|TCIRG1;ENSG00000110719|ENST00000265686|TCIRG1	ENST00000533005.5_1_11:67811775-67815272:+|nuORF	ENST00000533005.5_1_11:67811775-67815272:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	455.26727294921875	2	455.266876	908.519199	-0.14317	-6.5182E-05	-0.13586	-6.185E-05	-0.27903	-0.00012703	455.26665758197026	44.727	0.84749	44.727	44.484	45.332	0					42	18	4	0	0	0	0.053172	2	3036	3036;3059		116.9	39.586	1	3221700			15310	2790	12447	12467	16940;16941	16940					0.06128026711462553
GVSDVELRV	9	Unmodified	_GVSDVELRV_					0	0	0		nc|ENSG00000143376|Q96L92-2|SNX27;ENST00000368841.6_1_1:151584666-151666074:+|nuORF;nc|ENSG00000143376|Q96L92-3|SNX27;ENSG00000143376|ENST00000458013|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	MULTI-MSMS	OvCa99_classI_Rep5	1	487.2709045410156	2	487.269281	972.52401	2.0527	0.0010002	0.22725	0.00011073	2.28	0.001111	487.2692978210626	84.98	0.90877	84.98	84.716	85.624	0					59	21	5	0	0	0	0.060996	2	8915	8886;8915		112.41	18.404	1	8242700			15311	5045	12448	12468	16942;16943	16943					0.03664866063570571
GVSELLLQ	8	Unmodified	_GVSELLLQ_					0	0	0		nc|ENSG00000204614|Q6P9F5-2|TRIM40;ENSG00000204614|ENST00000396581|TRIM40	nc|ENSG00000204614|Q6P9F5-2|TRIM40	nc|ENSG00000204614|Q6P9F5-2|TRIM40	MULTI-SECPEP	OvCa99_classI_Rep5	1	429.3016052246094	2	429.750193	857.485833	0.8812	0.0003787	-1.187	-0.00051012	-0.30582	-0.00013143	429.7495861799018	66.896	0.55888	66.896	66.739	67.298	0					17	13	2	0	0	0	0.028476	1	6223	6223		63.306	24.5	1	201060			15312	9010	12449	12469	16944	16944					0.05138980148910832
GVSHHVCLQ	9	Unmodified	_GVSHHVCLQ_					0	0	0			REV__ENST00000518816.5_1_8:21924386-21926775:+|nuORF	REV__ENST00000518816.5_1_8:21924386-21926775:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.2771911621094	2	490.242544	978.470534	1.5035	0.00073709	2.1644	0.0010611	3.6679	0.0017982	490.2439014764361	86.448	0.14738	83.821	83.713	83.86	-2.6269					4	2	2	0	0	0	0.027462	1	7308	7308		38.806	8.3025	1	20348	+		15313	27033	12450	12470	16945	16945					-0.019562099199333716
GVSHSRKS	8	Unmodified	_GVSHSRKS_					0	0	0			REV__ENST00000529978.1_1_8:12870155-12879550:+|nuORF	REV__ENST00000529978.1_1_8:12870155-12879550:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	428.7619323730469	2	429.233033	856.451513	-0.37374	-0.00016042	4.2585	0.0018279	3.8847	0.0016674	429.2328579387366	95.806	0.15282	93.381	93.304	93.457	-2.4256					4	2	2	0	0	0	0.028476	1	8436	8436		13.775	0	1	2761.9	+		15314	23493	12451	12471	16946	16946					0.017545767806609547
GVSIFSVTAH	10	Unmodified	_GVSIFSVTAH_					0	0	0		ENSG00000253485|ENST00000518069|PCDHGA5;nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5	ENSG00000253485|ENST00000518069|PCDHGA5	ENSG00000253485|ENST00000518069|PCDHGA5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.81646728515625	2	509.271824	1016.5291	-0.30892	-0.00015732	0.53699	0.00027347	0.22807	0.00011615	509.27212963882096	76.123	1.4778	73.184	72.888	74.366	-2.9389					68	30	4	0	0	0	0.02649	1	5995	5995		71.296	0	1	855450			15315	9432	12452	12472	16947	16947					0.021491699261900976
GVSILYTL	8	Unmodified	_GVSILYTL_					0	0	0		ENSG00000204624|ENST00000294484|DISP3	ENSG00000204624|ENST00000294484|DISP3	ENSG00000204624|ENST00000294484|DISP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	433.74896240234375	2	433.255111	864.49567	0.13384	5.7985E-05	1.8219	0.00078937	1.9558	0.00084735	433.2558913894159	73.296	0.56197	73.296	73.035	73.597	0					16	13	2	0	0	0	0.028476	1	7199	7199		25.45	0	1	572080			15316	9012	12453	12473	16948	16948					0.058001681542691585
GVSIPHLLGIG	11	Unmodified	_GVSIPHLLGIG_					0	0	0		tr|A0A553SSE7|A0A553SSE7_NIACIBacterialIgdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02835PE=4SV=1	tr|A0A553SSE7|A0A553SSE7_NIACIBacterialIgdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02835PE=4SV=1	tr|A0A553SSE7|A0A553SSE7_NIACIBacterialIgdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02835PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	531.816650390625	2	531.818941	1061.62333	-6.4726	-0.0034422	2.2386	0.0011905	-4.234	-0.0022517	531.8202040929181	159.64	0.95506	158.31	157.96	158.91	-1.3316					28	18	3	0	0	0	0.70518	1	13807	13807		27.882	2.3082	1	50777			15317	34367	12454	12474	16949	16949					0.09498308748334239
GVSKENGYVAA	11	Unmodified	_GVSKENGYVAA_					0	0	0			REV__tr|A0A7D7A140|A0A7D7A140_9CLOTAldo/ketoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03710PE=4SV=1	REV__tr|A0A7D7A140|A0A7D7A140_9CLOTAldo/ketoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03710PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	548.3530883789062	2	547.77747	1093.54039	0.30247	0.00016569	3.787	0.0020744	4.0895	0.0022401	548.2808769795524	97.072	1.0817	96.113	95.728	96.809	-0.95857					50	21	4	0	0	0	0.025457	1	8736	8736		22.58	0	1	62914	+		15318	32470	12455	12475	16950	16950					-0.0026405277033063612
GVSLKSCPL	9	Unmodified	_GVSLKSCPL_					0	0	0			REV__ENSG00000124788|ENST00000436367|ATXN1	REV__ENSG00000124788|ENST00000436367|ATXN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	452.25445556640625	2	452.252046	902.489538	0.61622	0.00027869	3.7958	0.0017166	4.412	0.0019953	452.25355541518655	21.533	1.7415	20.194	19.77	21.512	-1.3386					84	35	3	0	0	0	0.44568	1	187	187		47.657	0	1	281670	+		15319	18706	12456	12476	16951	16951					0.03439326651096053
GVSLLLPKLE	10	Unmodified	_GVSLLLPKLE_					0	0	0		ENST00000475849.1_1_6:155632464-155635574:-|nuORF	ENST00000475849.1_1_6:155632464-155635574:-|nuORF	ENST00000475849.1_1_6:155632464-155635574:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.8314819335938	2	534.8368	1067.65905	-0.25212	-0.00013484	0.038542	2.0614E-05	-0.21357	-0.00011423	534.8367039216079	35.776	0.59821	35.776	35.566	36.164	0					18	12	2	0	0	0	0.026681	1	1826	1826		22.58	0	1	295030			15320	12456	12457	12477	16952	16952					0.12792346205287686
GVSLSKASH	9	Unmodified	_GVSLSKASH_					0	0	0		ENSG00000124120|ENST00000262605|TTPAL	ENSG00000124120|ENST00000262605|TTPAL	ENSG00000124120|ENST00000262605|TTPAL	MULTI-SECPEP	OvCa99_classI_Rep5	1	442.267578125	2	443.243067	884.47158	0.38443	0.0001704	-0.083652	-3.7078E-05	0.30078	0.00013332	443.2428742572482	59.113	0.98597	59.113	58.932	59.918	0					55	25	3	0	0	0	0.027392	1	5129	5129		44.117	1.6423	1	2033100			15321	3624	12458	12478	16953	16953					0.024723277206135208
GVSNPADPANI	11	Unmodified	_GVSNPADPANI_					0	0	0		tr|A0A553SPW6|A0A553SPW6_NIACILincomycineffluxMFStransporterLmr(B)OS=NialliacirculansOX=1397GN=lmr(B)PE=4SV=1	tr|A0A553SPW6|A0A553SPW6_NIACILincomycineffluxMFStransporterLmr(B)OS=NialliacirculansOX=1397GN=lmr(B)PE=4SV=1	tr|A0A553SPW6|A0A553SPW6_NIACILincomycineffluxMFStransporterLmr(B)OS=NialliacirculansOX=1397GN=lmr(B)PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.86181640625	2	527.76182	1053.50909	-0.65246	-0.00034434	0.24221	0.00012783	-0.41025	-0.00021651	527.7619191570054	59.041	0.48845	59.041	58.852	59.34	0					27	12	3	0	0	0	0.024982	1	5102	5102		47.96	0	1	963260			15322	34096	12459	12479	16954	16954					-0.015526258044474162
GVSPATKMI	9	Unmodified	_GVSPATKMI_					0	0	0		tr|A0A553SLF1|A0A553SLF1_NIACIL-threoninedehydrataseOS=NialliacirculansOX=1397GN=ilvAPE=3SV=1	tr|A0A553SLF1|A0A553SLF1_NIACIL-threoninedehydrataseOS=NialliacirculansOX=1397GN=ilvAPE=3SV=1	tr|A0A553SLF1|A0A553SLF1_NIACIL-threoninedehydrataseOS=NialliacirculansOX=1397GN=ilvAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	452.25390625	2	452.252046	902.489538	0.8613	0.00038952	3.2498	0.0014697	4.1111	0.0018593	452.2534208986577	33.657	1.7812	30.947	30.722	32.503	-2.7097					88	35	4	0	0	0	0.44568	1	1284	1284		47.657	5.1829	1	1170300			15323	33716	12460	12480	16955	16955					0.0343932665111879
GVSRLRNL	8	Unmodified	_GVSRLRNL_					0	0	0		ENSG00000128268|ENST00000341184|MGAT3	ENSG00000128268|ENST00000341184|MGAT3	ENSG00000128268|ENST00000341184|MGAT3	MULTI-MSMS	OvCa9_classI_Rep4_	4	457.77862548828125	2	457.780151	913.545748	-0.57777	-0.00026449	3.1362	0.0014357	2.5584	0.0011712	457.7801444808238	51.29	1.765	48.117	47.721	49.486	-3.1734					87	34	4	0	0	0	0.73494	1	2985	2985		34.173	0.65696	1	312550			15324	3870	12461	12481	16956	16956					0.08551715602800414
GVSVITALNYL	11	Unmodified	_GVSVITALNYL_					0	0	0		tr|A0A553SIE1|A0A553SIE1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_14660PE=4SV=1	tr|A0A553SIE1|A0A553SIE1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_14660PE=4SV=1	tr|A0A553SIE1|A0A553SIE1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_14660PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	575.3316650390625	2	575.329339	1148.64412	1.8525	0.0010658	1.4977	0.00086165	3.3502	0.0019275	575.3301096710104	92.825	0.83313	92.825	92.472	93.305	0					62	19	4	0	0	0	0.65063	1	10061	10061		40.058	0.80534	1	5663800			15325	33371	12462	12482	16957	16957					0.07574854337326542
GVSVRRPAV	9	Unmodified	_GVSVRRPAV_					0	0	0			REV__ENST00000592120.5_2_16:4896808-4897351:+|nuORF	REV__ENST00000592120.5_2_16:4896808-4897351:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	470.7879638671875	2	470.787976	939.561398	0.23229	0.00010936	-0.89827	-0.0004229	-0.66598	-0.00031354	470.78745923109625	40.781	2.1682	38.071	37.601	39.769	-2.7097					104	43	4	0	0	0	0.60342	1	2148	2148		31.53	1.0262	1	1630700	+		15326	27944	12463	12483	16958	16958					0.08920002119850778
GVSVSHLNSL	10	Unmodified	_GVSVSHLNSL_					0	0	0			REV__ENST00000475924.5_1_22:39064059-39064179:+|nuORF	REV__ENST00000475924.5_1_22:39064059-39064179:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.32537841796875	2	506.774731	1011.53491	-1.2164	-0.00061643	1.2253	0.00062094	0.008887	4.5037E-06	506.77535582773663	76.067	1.3504	73.695	73.417	74.767	-2.3715					52	25	3	0	0	0	0.026553	1	3872	3872		47.657	6.8792	1	503640	+		15327	26363	12464	12484	16959	16959					0.029602684378460253
GVTERKRIDNL	11	Unmodified	_GVTERKRIDNL_					0	0	0			REV__tr|A0A553SQV9|A0A553SQV9_NIACIRecombinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07395PE=4SV=1	REV__tr|A0A553SQV9|A0A553SQV9_NIACIRecombinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07395PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	434.7588806152344	3	434.249242	1299.7259	0.63746	0.00027681	-0.25599	-0.00011116	0.38146	0.00016565	434.24888269928107	32.449	0.34814	32.449	32.254	32.602	0					21	6	5	0	0	0	0.026113	1	1432	1432		18.531	5.0231	1	38393	+		15328	30666	12465	12485	16960	16960					0.08802349749134919
GVTGLKLK	8	Unmodified	_GVTGLKLK_					0	0	0		DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	408.7319030761719	2	408.271096	814.527639	-0.039162	-1.5989E-05	0.50487	0.00020613	0.46571	0.00019014	408.2710934548606	50.631	0.64172	47.837	47.581	48.222	-2.794					17	12	2	0	0	0	0.028476	1	3295	3295		25.45	7.1258	1	12895			15329	767	12466	12486	16961	16961					0.11295580628086554
GVTIGDELLL	10	Unmodified	_GVTIGDELLL_					0	0	0		tr|A0A553SN01|A0A553SN01_NIACIDNA3'-5'helicaseOS=NialliacirculansOX=1397GN=CEQ21_23525PE=4SV=1	tr|A0A553SN01|A0A553SN01_NIACIDNA3'-5'helicaseOS=NialliacirculansOX=1397GN=CEQ21_23525PE=4SV=1	tr|A0A553SN01|A0A553SN01_NIACIDNA3'-5'helicaseOS=NialliacirculansOX=1397GN=CEQ21_23525PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.3148193359375	2	515.294965	1028.57538	1.0267	0.00052906	-1.0078	-0.0005193	0.018945	9.7621E-06	515.2935828206676	145.93	0.19998	145.93	145.83	146.03	0					5	3	2	0	0	0	0.026849	1	17071	17071		49.442	3.4896	1	11011			15330	33891	12467	12487	16962	16962					0.06223190037621862
GVTILPLIIL	10	Unmodified	_GVTILPLIIL_					0	0	0			REV__tr|A0A553SSS9|A0A553SSS9_NIACIPTSfructosetransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_03630PE=4SV=1	REV__tr|A0A553SSS9|A0A553SSS9_NIACIPTSfructosetransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_03630PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.7964477539062	2	526.359911	1050.70527	-0.77611	-0.00040851	4.0385	0.0021257	3.2624	0.0017172	526.36166715556	53.756	0.61915	53.756	53.389	54.008	0					27	14	3	0	0	0	0.027117	1	4294	4294		23.042	0	1	274830	+		15331	30875	12468	12488	16963	16963					0.18194411107424457
GVTITELEPGL	11	Unmodified	_GVTITELEPGL_					0	0	0		nc|ENSG00000116147|Q92752-2|TNR;ENSG00000116147|ENST00000367674|TNR	nc|ENSG00000116147|Q92752-2|TNR	nc|ENSG00000116147|Q92752-2|TNR	MULTI-MSMS	OvCa9_classI_Rep3	3	564.8101806640625	2	564.810979	1127.6074	-3.7232	-0.0021029	2.8979	0.0016368	-0.82526	-0.00046612	564.8125164297064	146.26	1.3933	145.3	144.9	146.29	-0.95946					62	27	3	0	0	0	0.58572	1	12308	12308		45.972	0	1	156470			15332	3159	12469	12489	16964	16964					0.04870557720778379
GVTKTDSVL	9	Unmodified	_GVTKTDSVL_					0	0	0		ENST00000392627.5_1_17:72427854-72428007:+|nuORF	ENST00000392627.5_1_17:72427854-72428007:+|nuORF	ENST00000392627.5_1_17:72427854-72428007:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	460.773681640625	2	460.258382	918.502212	-0.696	-0.00032034	1.5381	0.00070792	0.84209	0.00038758	460.25844820691435	39.93	0.21773	39.93	39.798	40.016	0					6	4	2	0	0	0	0.027462	1	2388	2388		30.318	0	1	63616			15333	11231	12470	12490	16965	16965					0.03970061315010298
GVTKTDSVLSV	11	Unmodified	_GVTKTDSVLSV_					0	0	0		ENST00000392627.5_1_17:72427854-72428007:+|nuORF	ENST00000392627.5_1_17:72427854-72428007:+|nuORF	ENST00000392627.5_1_17:72427854-72428007:+|nuORF	MSMS	OvCa9_classI_Rep2	2	553.3091430664062	2	553.308603	1104.60265	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.924	1	60.18	59.68	60.68	-2.7444								0	0	0	0.19469	1	4741	4741		29.551	1.4693	1				15334	11231	12471	12491	16966	16966					0.05453673578017515
GVTLVPIE	8	Unmodified	_GVTLVPIE_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5;LAMA5-C20orf151|1|fusion	ENSG00000130702|ENST00000252999|LAMA5;LAMA5-C20orf151|1|fusion	LAMA5-C20orf151|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.2350158691406	2	414.247286	826.48002	-0.52587	-0.00021784	-3.6125	-0.0014965	-4.1384	-0.0017143	414.2458169623428	43.758	0.30147	43.758	43.565	43.866	0					10	6	2	0	0	0	0.028476	1	2902	2902		62.978	10.679	1	82435			15335	4000;14793	12472	12492	16967	16967					0.05983881637223476
GVTLYFLLENI	11	Unmodified	_GVTLYFLLENI_					0	0	0		tr|A0A7D6ZVN7|A0A7D6ZVN7_9CLOTDMTfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_15650PE=3SV=1	tr|A0A7D6ZVN7|A0A7D6ZVN7_9CLOTDMTfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_15650PE=3SV=1	tr|A0A7D6ZVN7|A0A7D6ZVN7_9CLOTDMTfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_15650PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.3604736328125	2	641.358096	1280.70164	1.1781	0.00075555	2.3506	0.0015076	3.5286	0.0022631	641.3595241554856	37.402	1.3446	34.509	34.192	35.536	-2.8925					74	26	4	0	0	0	0.72005	1	1383	1383		25.126	2.5463	1	265120			15336	35806	12473	12493	16968	16968					0.07251696542903119
GVTTPPTAPLS	11	Unmodified	_GVTTPPTAPLS_					0	0	0		ENST00000532219.5_3_5:139921832-139928844:+|nuORF;ENSG00000243056|ENST00000310331|EIF4EBP3	ENST00000532219.5_3_5:139921832-139928844:+|nuORF	ENST00000532219.5_3_5:139921832-139928844:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	520.783203125	2	520.784764	1039.55498	0.27719	0.00014436	-2.8419	-0.00148	-2.5647	-0.0013357	520.7831116898267	31.623	1.0879	28.913	28.74	29.828	-2.7097					47	21	4	0	0	0	0.65947	1	976	976		39.253	6.4404	1	197730			15337	9371	12474	12494	16969	16969					0.036780193777985914
GVTWECVYR	9	Unmodified	_GVTWECVYR_					0	0	0			REV__ENST00000521847.5_1_17:78391611-78391674:+|nuORF	REV__ENST00000521847.5_1_17:78391611-78391674:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.3418579101562	2	556.763309	1111.51206	-0.1692	-9.4203E-05	-4.4301	-0.0024665	-4.5993	-0.0025607	556.760587556178	53.781	0.64407	53.781	53.609	54.253	0					31	15	3	0	0	0	0.027462	1	4301	4301		21.96	0	1	334240	+		15338	27077	12475	12495	16970	16970					-0.039230739512731816
GVVAAVQVN	9	Unmodified	_GVVAAVQVN_					0	0	0			REV__ENSG00000153107|ENST00000341068|ANAPC1;REV__ENST00000485325.1_1_2:112560984-112579093:-|nuORF	REV__ENST00000485325.1_1_2:112560984-112579093:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	429.2634582519531	2	428.747985	855.481417	-0.35317	-0.00015142	-0.081387	-3.4895E-05	-0.43455	-0.00018631	428.747840369328	41.651	0.77575	38.671	38.44	39.216	-2.9804					22	14	2	0	0	0	0.027462	1	1857	1857		33.516	0	1	36544	+		15339	20321;26562	12476	12496	16971	16971					0.047895157259858934
GVVAKGGLTPK	11	Unmodified	_GVVAKGGLTPK_					0	0	0			REV__sp|P08318|PP150_HCMVALargestructuralphosphoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL32PE=1SV=1	REV__sp|P08318|PP150_HCMVALargestructuralphosphoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL32PE=1SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	513.820068359375	2	513.818941	1025.62333	2.2473	0.0011547	0.031237	1.605E-05	2.2785	0.0011707	513.8188735009146	80.576	0.97214	80.576	80.234	81.206	0					51	22	3	0	0	0	0.21275	1	8272	8272		78.264	10.77	1	3955000	+		15340	29416	12477	12497	16972	16972					0.11154308748314179
GVVDKTTSAVI	11	Unmodified	_GVVDKTTSAVI_					0	0	0			REV__tr|A0A7D6VTD0|A0A7D6VTD0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08415PE=4SV=1	REV__tr|A0A7D6VTD0|A0A7D6VTD0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08415PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3117065429688	2	545.311146	1088.60774	-2.7951	-0.0015242	3.8807	0.0021162	1.0856	0.00059198	545.3131823387719	36.778	0.98604	34.069	33.844	34.83	-2.7097					48	19	4	0	0	0	0.68021	1	1601	1601		36.447	2.2742	1	194620	+		15341	31595	12478	12498	16973	16973					0.06697977440603609
GVVGARGVGLK	11	Unmodified	_GVVGARGVGLK_					0	0	0			REV__ENST00000586361.5_1_19:36386955-36387291:-|nuORF	REV__ENST00000586361.5_1_19:36386955-36387291:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	506.81561279296875	2	506.816733	1011.61891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.05	1	32.201	31.701	32.701	-2.849								0	0	0	0.19349	1	1090	1090		37.812	12.361	1		+		15342	27863	12479	12499	16974	16974					0.1135684432541666
GVVGQQQGL	9	Unmodified	_GVVGQQQGL_					0	0	0		ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-SECPEP	OvCa99_classI_Rep5	1	442.2903747558594	2	443.243067	884.47158	0.24533	0.00010874	0.018126	8.0341E-06	0.26346	0.00011678	443.24303590311433	26.216	0.35013	26.216	26.042	26.392	0					9	6	2	0	0	0	0.027462	1	678	678		26.796	0	1	27262			15343	2061	12480	12500	16975	16975					0.024723277206248895
GVVIPVLVVM	10	Unmodified	_GVVIPVLVVM_					0	0	0		nc|ENSG00000122778|Q9HCM3-2|KIAA1549;ENSG00000122778|ENST00000422774|KIAA1549;nc|ENSG00000122778|Q9HCM3-3|KIAA1549;nc|ENSG00000122778|Q9HCM3-4|KIAA1549	nc|ENSG00000122778|Q9HCM3-2|KIAA1549	nc|ENSG00000122778|Q9HCM3-2|KIAA1549	MULTI-MSMS	OvCa9_classI_Rep3	3	513.3302001953125	2	513.325014	1024.63547	1.1851	0.00060836	-0.96302	-0.00049434	0.22213	0.00011402	513.8246530993847	67.449	2.102	64.562	64.137	66.239	-2.8873					146	41	6	0	0	0	0.73286	1	2885	2885		26.796	0	1	2025700			15344	3557	12481	12501	16976	16976					0.1241420916712741
GVVIVVLASRA	11	Unmodified	_GVVIVVLASRA_					0	0	0		ENSG00000188883|ENST00000340940|KLRG2;KLRG2-C4orf34|1|fusion	ENSG00000188883|ENST00000340940|KLRG2	ENSG00000188883|ENST00000340940|KLRG2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.6383666992188	2	542.347866	1082.68118	-0.19874	-0.00010779	-0.30193	-0.00016375	-0.50067	-0.00027154	542.3476008250896	38.292	0.59375	35.365	35.156	35.75	-2.9264					17	11	2	0	0	0	0.025912	1	1467	1467		22.58	6.9378	1	34508			15345	8512	12482	12502	16977	16977					0.14314570673764138
GVVLAKGSWNS	11	Unmodified	_GVVLAKGSWNS_					0	0	0		ENSG00000145283|ENST00000273905|SLC10A6	ENSG00000145283|ENST00000273905|SLC10A6	ENSG00000145283|ENST00000273905|SLC10A6	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.3436889648438	2	559.303655	1116.59276	1.7617	0.00098534	0.21111	0.00011808	1.9728	0.0011034	559.8055862613634	111.43	0.67004	111.43	110.98	111.65	0					26	14	3	0	0	0	0.025814	1	12628	12628		27.047	8.7229	1	283270			15346	5214	12483	12503	16978	16978					0.03912530363299993
GVVLGQNL	8	Unmodified	_GVVLGQNL_					0	0	0		nc|ENSG00000132640|Q9Y2F9-2|BTBD3;ENSG00000132640|ENST00000378226|BTBD3	nc|ENSG00000132640|Q9Y2F9-2|BTBD3	nc|ENSG00000132640|Q9Y2F9-2|BTBD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.8877258300781	2	400.237253	798.459953	0.93434	0.00037396	1.8401	0.00073649	2.7745	0.0011104	400.2379920943081	43.376	0.72269	43.376	43.143	43.866	0					21	16	2	0	0	0	0.028476	1	2910	2910		37.028	30.716	1	557970			15347	4155	12484	12504	16979	16979					0.052661306972822786
GVVQPGRSL	9	Unmodified	_GVVQPGRSL_					0	0	0		nc|ENSG00000211955|P0DP02|IGHV3-30-3;nc|ENSG00000270550|P0DP03|IGHV3-30-5;nc|ENSG00000211955|P01772|IGHV3-33	nc|ENSG00000211955|P0DP02|IGHV3-30-3	nc|ENSG00000211955|P0DP02|IGHV3-30-3	MULTI-MSMS	OvCa99_classI_Rep5	1	456.7681884765625	2	456.766709	911.518865	0.29563	0.00013503	-0.185	-8.4503E-05	0.11063	5.053E-05	456.76647894840715	57.46	1.2232	57.46	57.18	58.403	0					46	28	3	0	0	0	0.14855	1	4819	4819		85.161	20.954	1	2534700			15348	15303	12485	12505	16980	16980					0.05956606991605895
GVVQPGRSL	9	Unmodified	_GVVQPGRSL_					0	0	0		nc|ENSG00000211955|P0DP02|IGHV3-30-3;nc|ENSG00000270550|P0DP03|IGHV3-30-5;nc|ENSG00000211955|P01772|IGHV3-33	nc|ENSG00000211955|P0DP02|IGHV3-30-3	nc|ENSG00000211955|P0DP02|IGHV3-30-3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	456.766709	911.518865	0.10562	4.8243E-05	-0.2664	-0.00012168	-0.16078	-7.3439E-05	456.7664490732417	60.544	1.786	57.774	57.291	59.077	-2.7702	0.039765	0.00014675	NaN	85.161	86	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234670			15349	15303	12485	12505							0.05956606991605895
GVVRLGKWRAQ	11	Unmodified	_GVVRLGKWRAQ_					0	0	0		ENSG00000135605|ENST00000381501|TEC	ENSG00000135605|ENST00000381501|TEC	ENSG00000135605|ENST00000381501|TEC	MULTI-MSMS	OvCa9_classI_Rep2	2	423.9217529296875	3	423.922801	1268.74657	0.4048	0.00017161	-3.5984	-0.0015254	-3.1936	-0.0013538	423.92128381620927	43.861	1.6901	41.151	40.857	42.547	-2.7097					105	33	5	0	0	0	0.70032	1	2470	2470		29.551	1.4693	1	640520			15350	4392	12486	12506	16981	16981					0.1229498491945833
GVVTAGVIKK	10	Unmodified	_GVVTAGVIKK_					0	0	0		tr|A0A553SPL0|A0A553SPL0_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_26595PE=4SV=1	tr|A0A553SPL0|A0A553SPL0_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_26595PE=4SV=1	tr|A0A553SPL0|A0A553SPL0_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_26595PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	486.31549072265625	2	486.316035	970.617516	-1.0603	-0.00051562	0.87069	0.00042343	-0.18957	-9.2189E-05	486.31628594803936	50.625	1.6844	47.831	47.43	49.115	-2.794					77	33	4	0	0	0	0.35465	1	3280	3280		74.255	10.048	1	433010			15351	34057	12487	12507	16982	16982					0.13103210236658924
GVVTAGVIKK	10	Unmodified	_GVVTAGVIKK_					0	0	0		tr|A0A553SPL0|A0A553SPL0_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_26595PE=4SV=1	tr|A0A553SPL0|A0A553SPL0_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_26595PE=4SV=1	tr|A0A553SPL0|A0A553SPL0_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_26595PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.3147888183594	2	486.316035	970.617516	-0.80421	-0.0003911	0.072515	3.5265E-05	-0.7317	-0.00035584	486.31601345506743	50.935	1.8673	47.761	47.516	49.384	-3.1734					86	36	4	0	0	0	0.35465	1	2980	2980		74.255	4.6274	1	1315100			15352	34057	12487	12507	16983	16983					0.13103210236658924
GVVVRDFR	8	Unmodified	_GVVVRDFR_					0	0	0		L1MC5_dup3481|chr4:19631159-19632103:+|1.0071503765471246|0.0011382453961836|9.79|425.0|2|1|sense	L1MC5_dup3481|chr4:19631159-19632103:+|1.0071503765471246|0.0011382453961836|9.79|425.0|2|1|sense	L1MC5_dup3481|chr4:19631159-19632103:+|1.0071503765471246|0.0011382453961836|9.79|425.0|2|1|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	474.2775573730469	2	474.274701	946.534849	-0.65998	-0.00031301	3.1039	0.0014721	2.4439	0.0011591	474.27647540121154	49.575	0.64849	49.575	49.119	49.768	0					24	14	3	0	0	0	0.6962	1	3715	3715		44.117	3.5442	1	968290			15353	14604	12488	12508	16984	16984					0.05944313228519604
GVVWLPWLHL	10	Unmodified	_GVVWLPWLHL_					0	0	0			REV__ENST00000356584.7_1_19:57985735-57987048:-|nuORF	REV__ENST00000356584.7_1_19:57985735-57987048:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	407.23828125	3	407.237726	1218.69135	2.1016	0.00085586	0.57392	0.00023372	2.6755	0.0010896	407.2378761201888	34.958	1.453	32.115	31.792	33.245	-2.8429					72	28	4	0	0	0	0.69073	1	1076	1076		31.53	1.2121	1	382270	+		15354	24765	12489	12509	16985	16985					0.09075178398984463
GVWHGVGV	8	Unmodified	_GVWHGVGV_					0	0	0		L1PA6_dup2267|chr6:2299837-2303022:+|1.5111882528479883|0.3006554191737456|2.33|429.0|89|3|sense	L1PA6_dup2267|chr6:2299837-2303022:+|1.5111882528479883|0.3006554191737456|2.33|429.0|89|3|sense	L1PA6_dup2267|chr6:2299837-2303022:+|1.5111882528479883|0.3006554191737456|2.33|429.0|89|3|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	405.71893310546875	2	405.716488	809.418422	1.9299	0.00078299	3.7428	0.0015185	5.6727	0.0023015	405.71788630934805	120.02	2.0709	118.99	118.68	120.75	-1.0271					79	40	4	0	0	0	0.7363	1	9142	9142		33.493	3.6514	1	570100			15355	14720	12490	12510	16986	16986					0.006089947286227471
GVWQPFASL	9	Unmodified	_GVWQPFASL_					0	0	0			REV__ENST00000285689.7_2_5:125759020-125759227:+|nuORF	REV__ENST00000285689.7_2_5:125759020-125759227:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	502.7626037597656	2	502.763635	1003.51272	1.2962	0.00065166	-2.0149	-0.001013	-0.71875	-0.00036136	502.76247959947113	61.457	2.958	58.389	57.803	60.761	-3.0685					131	69	3	0	0	0	0.50149	1	2150	2150		42.396	5.237	1	112640	+		15356	24135	12491	12511	16987	16987					0.01110088760083272
GVYDYLMYV	9	Unmodified	_GVYDYLMYV_					0	0	0		nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.8289184570312	2	561.762443	1121.51033	0.39507	0.00022194	4.4863	0.0025203	4.8814	0.0027422	561.7647059370818	70.492	0.43359	70.492	70.328	70.761	0					15	10	2	0	0	0	0.027462	1	6772	6772		40.573	20.091	1	269780			15357	4366	12492	12512	16988	16988					-0.04556127759906303
GVYGDVQRV	9	Unmodified	_GVYGDVQRV_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;chr19:797505-808360|88|17.34|0.46|5.24|+|2|PTBP1,PTBP1|1;ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2;ENST00000586944.5_1_19:807712-810823:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	496.7626037597656	2	496.761623	991.508694	0.22572	0.00011213	-0.44102	-0.00021908	-0.2153	-0.00010695	496.7612274152617	63.117	0.51251	63.117	62.902	63.414	0					28	12	3	0	0	0	0.42576	1	5654	5654		49.536	10.283	1	2034200			15358	962;14054	12493	12513	16989	16989					0.012599992663922421
GVYGDVQRV	9	Unmodified	_GVYGDVQRV_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;chr19:797505-808360|88|17.34|0.46|5.24|+|2|PTBP1,PTBP1|1;ENSG00000117569|ENST00000674951|PTBP2;nc|ENSG00000117569|Q9UKA9-2|PTBP2;nc|ENSG00000117569|Q9UKA9-4|PTBP2;nc|ENSG00000117569|Q9UKA9-3|PTBP2;ENST00000586944.5_1_19:807712-810823:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	496.761623	991.508694	1.2176	0.00060485	-0.96778	-0.00048075	0.24982	0.0001241	496.760954494359	65.968	0.7967	63.272	62.72	63.517	-2.6958	0.077654	-0.00034555	NaN	49.536	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34929			15359	962;14054	12493	12513							0.012599992663922421
GVYGGSVHEA	10	Unmodified	_GVYGGSVHEA_					0	0	0		nc|ENSG00000133313|Q96KP4-2|CNDP2;ENSG00000133313|ENST00000324262|CNDP2;ENST00000583938.5_1_18:72178083-72181050:+|nuORF	nc|ENSG00000133313|Q96KP4-2|CNDP2	nc|ENSG00000133313|Q96KP4-2|CNDP2	MULTI-MSMS	OvCa99_classI_Rep5	1	488.2303466796875	2	488.230156	974.445759	-0.077845	-3.8006E-05	-0.055145	-2.6924E-05	-0.13299	-6.493E-05	488.2299964391991	45.073	1.361	45.073	44.618	45.979	0					62	30	5	0	0	0	0.027703	1	3088	3088		138.83	73.36	1	2718200			15360	4217	12494	12514	16990	16990					-0.04248566521664543
GVYKKSIFV	9	Unmodified	_GVYKKSIFV_					0	0	0		nc|ENSG00000165264|O95139-2|NDUFB6;ENSG00000165264|ENST00000379847|NDUFB6	nc|ENSG00000165264|O95139-2|NDUFB6	nc|ENSG00000165264|O95139-2|NDUFB6	MULTI-MSMS	OvCa99_classI_Rep5	1	520.81201171875	2	520.810585	1039.60662	-1.8956	-0.00098726	1.4082	0.0007334	-0.48744	-0.00025386	520.8111265462439	64.018	0.68483	64.018	63.732	64.417	0					42	16	3	0	0	0	0.1804	1	5797	5797		79.713	26.361	1	2254600			15361	6541	12495	12515	16991	16991					0.08839807862386806
GVYVWGETWEK	11	Unmodified	_GVYVWGETWEK_					0	0	0		nc|ENSG00000149089|Q96GX9-3|APIP;ENSG00000149089|ENST00000395787|APIP	nc|ENSG00000149089|Q96GX9-3|APIP	nc|ENSG00000149089|Q96GX9-3|APIP	MULTI-SECPEP	OvCa9_classI_Rep3	3	452.77777099609375	3	451.88731	1352.6401	0.72579	0.00032798	-1.8346	-0.00082901	-1.1088	-0.00050104	452.2215075081543	69.555	0.19936	66.741	66.612	66.811	-2.8144					5	3	2	0	0	0	0.025864	1	3099	3099		28.577	0	1	4924.7			15362	5439	12496	12516	16992	16992					-0.022112351563691846
GWAAEECRV	9	Unmodified	_GWAAEECRV_					0	0	0		ENSG00000214891|ENST00000617704|TRIM64C	ENSG00000214891|ENST00000617704|TRIM64C	ENSG00000214891|ENST00000617704|TRIM64C	MULTI-MSMS	OvCa9_classI_Rep3	3	510.73382568359375	2	510.732009	1019.44946	1.2624	0.00064473	4.3283	0.0022106	5.5907	0.0028553	510.7341500677473	121.97	0.99559	120.94	120.64	121.64	-1.0286					38	18	3	0	0	0	0.61208	1	9361	9361		30.504	3.7075	1	89046			15363	9188	12497	12517	16993	16993					-0.05948220019456585
GWALTARIP	9	Unmodified	_GWALTARIP_					0	0	0		IGF2R|p.S2210Ffs*137|1|0.18|ENSG00000197081|chr6:160090076-160090077|-/TTTGTCCCACCCGAGGTGTTCAAGCAGCCTGG|frameshift_variant	IGF2R|p.S2210Ffs*137|1|0.18|ENSG00000197081|chr6:160090076-160090077|-/TTTGTCCCACCCGAGGTGTTCAAGCAGCCTGG|frameshift_variant	IGF2R|p.S2210Ffs*137|1|0.18|ENSG00000197081|chr6:160090076-160090077|-/TTTGTCCCACCCGAGGTGTTCAAGCAGCCTGG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3009033203125	2	492.784902	983.55525	-1.2132	-0.00059787	1.793	0.00088358	0.57979	0.00028571	492.7859558184213	93.952	1.069	91.991	91.526	92.595	-1.9617					27	20	2	0	0	0	0.027462	1	6098	6098		29.15	1.2673	1	32298			15364	14500	12498	12518	16994	16994					0.06281483888312778
GWANELLHEF	10	Unmodified	_GWANELLHEF_					0	0	0		ENSG00000111647|ENST00000279907|BLTP3B;nc|ENSG00000111647|A0JNW5-2|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	MULTI-MSMS	OvCa9_classI_Rep3	3	608.2967529296875	2	608.293288	1214.57202	3.6539	0.0022227	1.966	0.0011959	5.6199	0.0034186	608.2942855637167	59.026	3.3501	55.911	55.036	58.386	-3.1147					203	93	3	0	0	0	0.72319	1	1896	1896		27.882	2.3082	1	283460			15365	2836	12499	12519	16995	16995					-0.0266806001641271
GWDPVRYDLT	10	Unmodified	_GWDPVRYDLT_					0	0	0		nc|ENSG00000133454|Q8IUG5-2|MYO18B;ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B;MYO18B|p.I2077Mfs*53|1|0.11|ENSG00000133454|chr22:25992436-25992436|T/-|frameshift_variant	nc|ENSG00000133454|Q8IUG5-2|MYO18B	nc|ENSG00000133454|Q8IUG5-2|MYO18B	MULTI-SECPEP	OvCa9_classI_Rep2	2	408.7319030761719	3	407.868139	1220.58259	0.0039853	1.6255E-06	4.0416	0.0016484	4.0456	0.0016501	408.2044064874226	50.474	0.59225	47.68	47.531	48.123	-2.794					19	11	2	0	0	0	0.027187	1	3295	3295		25.126	4.2888	1	11039			15366	4222	12500	12520	16996	16996					-0.018880773619684987
GWDQKCLVL	9	Unmodified	_GWDQKCLVL_					0	0	0		ENST00000430109.1_1_1:1369598-1369895:-|nuORF	ENST00000430109.1_1_1:1369598-1369895:-|nuORF	ENST00000430109.1_1_1:1369598-1369895:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.2770385742188	2	531.276052	1060.53755	-0.046814	-2.4871E-05	0.45211	0.00024019	0.40529	0.00021532	531.2761980218208	86.656	1.3398	84.03	83.613	84.952	-2.6269					70	26	3	0	0	0	0.19758	1	7366	7366		76.774	5.4784	1	1610400			15367	11784	12501	12521	16997	16997					0.00970400571168284
GWEWFLRGYYC	11	Unmodified	_GWEWFLRGYYC_					0	0	0			REV__ENSG00000137200|ENST00000373451|CMTR1	REV__ENSG00000137200|ENST00000373451|CMTR1	MULTI-SECPEP	OvCa9_classI_Rep2	2	494.3023986816406	3	493.888657	1478.64414	0.93901	0.00046376	3.147	0.0015543	4.086	0.002018	493.8907000842766	125.34	0.44583	125.11	124.91	125.36	-0.2359					10	8	2	0	0	0	0.026488	1	12186	12186		6.3209	0	1	6086.3	+		15368	19440	12502	12522	16998	16998					-0.076034689342805
GWGELWGI	8	Unmodified	_GWGELWGI_					0	0	0		tr|A0A7D6VZW1|A0A7D6VZW1_9CLOTGlycine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=glyQSPE=3SV=1	tr|A0A7D6VZW1|A0A7D6VZW1_9CLOTGlycine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=glyQSPE=3SV=1	tr|A0A7D6VZW1|A0A7D6VZW1_9CLOTGlycine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=glyQSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.2408447265625	2	459.229428	916.444303	-1.0915	-0.00050126	0.54121	0.00024854	-0.55031	-0.00025272	459.23026111116246	53.657	0.76742	50.41	50.006	50.774	-3.2474					30	14	3	0	0	0	0.028476	1	3262	3262		21.702	0	1	16476			15369	35366	12503	12523	16999	16999					-0.01726155819756059
GWGLQGLNR	9	Unmodified	_GWGLQGLNR_					0	0	0		SLC25A21|p.K170R|1|0.04|ENSG00000183032|chr14:36711412-36711412|T/C|missense_variant	SLC25A21|p.K170R|1|0.04|ENSG00000183032|chr14:36711412-36711412|T/C|missense_variant	SLC25A21|p.K170R|1|0.04|ENSG00000183032|chr14:36711412-36711412|T/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.7698059082031	2	500.769783	999.525013	-4.4953	-0.0022511	2.1442	0.0010737	-2.3511	-0.0011774	500.7709639198172	153.95	1.4455	152.5	151.86	153.3	-1.4516					58	39	2	0	0	0	0.69895	1	15241	15241		18.324	0.062328	1	28265			15370	32825	12504	12524	17000	17000					0.025231252231378676
GWGMSLWGLL	10	Unmodified	_GWGMSLWGLL_					0	0	0		ENST00000563874.5_2_16:28493782-28493962:-|nuORF	ENST00000563874.5_2_16:28493782-28493962:-|nuORF	ENST00000563874.5_2_16:28493782-28493962:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.2593383789062	2	560.28642	1118.55829	-0.11948	-6.6942E-05	-0.94537	-0.00052968	-1.0648	-0.00059662	560.2868227019087	66.174	0.3956	66.174	66.096	66.491	0					16	9	2	0	0	0	0.026871	1	6163	6163		37.159	15.473	1	220710			15371	13794	12505	12525	17001	17001					0.0037499095080875122
GWGRGGQGPCL	11	Unmodified	_GWGRGGQGPCL_					0	0	0			REV__ENST00000220509.9_1_15:41195247-41195418:+|nuORF	REV__ENST00000220509.9_1_15:41195247-41195418:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	544.3028564453125	2	544.258725	1086.5029	-0.87979	-0.00047883	-3.8927	-0.0021186	-4.7725	-0.0025975	544.2563250691076	77.539	1.2093	75.187	74.838	76.048	-2.3527					48	23	4	0	0	0	0.02557	1	4160	4160		31.53	0	1	241540	+		15372	23739	12506	12526	17002	17002					-0.03689422516936247
GWGTLALIQRF	11	Unmodified	_GWGTLALIQRF_					0	0	0			REV__ENSG00000090487|ENST00000204566|SPG21	REV__ENSG00000090487|ENST00000204566|SPG21	MULTI-SECPEP	OvCa99_classI_Rep5	1	421.2328186035156	3	421.239907	1260.69789	-0.1293	-5.4465E-05	1.5233	0.00064169	1.394	0.00058723	421.5749728688383	61.875	1.4272	61.875	61.113	62.541	0					84	33	4	0	0	0	0.025746	1	5408	5408		22.562	10.629	1	461860	+		15373	17223	12507	12527	17003	17003					0.07797071559662072
GWGWEGAAGAT	11	Unmodified	_GWGWEGAAGAT_					0	0	0		nc|ENSG00000130005|Q14353-2|GAMT	nc|ENSG00000130005|Q14353-2|GAMT	nc|ENSG00000130005|Q14353-2|GAMT	MULTI-MSMS	OvCa9_classI_Rep2	2	531.738037109375	2	531.735606	1061.45666	0.0073479	3.9071E-06	4.076	0.0021673	4.0833	0.0021712	531.7375688517346	129.89	1.6824	129.66	129.07	130.75	-0.22697					67	33	3	0	0	0	0.70865	1	12792	12792		26.693	3.6504	1	62425			15374	15009	12508	12528	17004	17004					-0.07161164147373711
GWGYLYPISQ	10	Unmodified	_GWGYLYPISQ_					0	0	0		L1MEf_dup6140|chr8:143855850-143856370:+|1.5610221762686003|0.2389077802373403|2.71|429.0|30|3|anti-sense	L1MEf_dup6140|chr8:143855850-143856370:+|1.5610221762686003|0.2389077802373403|2.71|429.0|30|3|anti-sense	L1MEf_dup6140|chr8:143855850-143856370:+|1.5610221762686003|0.2389077802373403|2.71|429.0|30|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	592.3170776367188	2	592.292756	1182.57096	1.4981	0.00088733	-3.9249	-0.0023247	-2.4268	-0.0014374	592.2903536205913	147.28	0.72966	147.28	147.01	147.74	0					33	14	3	0	0	0	0.026994	1	17233	17233		25.574	5.5773	1	221930			15375	14630	12509	12529	17005	17005					-0.013022743852843632
GWHKIRDL	8	Unmodified	_GWHKIRDL_					0	0	0		tr|A0A553SJL9|A0A553SJL9_NIACIDUF2225domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16825PE=4SV=1	tr|A0A553SJL9|A0A553SJL9_NIACIDUF2225domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16825PE=4SV=1	tr|A0A553SJL9|A0A553SJL9_NIACIDUF2225domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16825PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	512.78759765625	2	512.787976	1023.5614	0.17929	9.1937E-05	-2.0382	-0.0010451	-1.8589	-0.00095321	512.7868569035359	108.11	1.6289	107.89	107.53	109.16	-0.22498					90	32	4	0	0	0	0.71369	1	10129	10129		40.573	1.3198	1	274530			15376	33516	12510	12530	17006	17006					0.050560021198293725
GWHTDAQSL	9	Unmodified	_GWHTDAQSL_					0	0	0			REV__ENST00000538547.4_1_20:18296727-18296835:+|nuORF	REV__ENST00000538547.4_1_20:18296727-18296835:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.802001953125	2	507.735606	1013.45666	-1.2366	-0.00062785	-2.2196	-0.001127	-3.4562	-0.0017548	507.7344008509229	54.456	0.15275	51.208	51.132	51.285	-3.2474					4	2	2	0	0	0	0.027392	1	3379	3379		44.117	0	1	6562.1	+		15377	27324	12511	12531	17007	17007					-0.04953164147366351
GWILLTAVVMI	11	Unmodified	_GWILLTAVVMI_					0	0	0		tr|A0A553STV2|A0A553STV2_NIACIDamage-inducibleproteinCinAOS=NialliacirculansOX=1397GN=CEQ21_05675PE=4SV=1	tr|A0A553STV2|A0A553STV2_NIACIDamage-inducibleproteinCinAOS=NialliacirculansOX=1397GN=CEQ21_05675PE=4SV=1	tr|A0A553STV2|A0A553STV2_NIACIDamage-inducibleproteinCinAOS=NialliacirculansOX=1397GN=CEQ21_05675PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	406.24578857421875	3	405.91051	1214.7097	2.1896	0.00088878	0.87893	0.00035677	3.0685	0.0012455	405.91079461880264	64.995	0.70951	62.001	61.746	62.456	-2.9933					33	13	3	0	0	0	0.71929	1	2583	2583		26.063	5.2262	1	77611			15378	34539	12512	12532	17008	17008					0.1109355225867148
GWITVRDDL	9	Unmodified	_GWITVRDDL_					0	0	0		tr|A0A7D7AAU9|A0A7D7AAU9_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12820PE=4SV=1	tr|A0A7D7AAU9|A0A7D7AAU9_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12820PE=4SV=1	tr|A0A7D7AAU9|A0A7D7AAU9_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12820PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.3202514648438	2	537.782556	1073.55056	-0.057964	-3.1172E-05	2.1559	0.0011594	2.0979	0.0011282	537.7837339954513	109.91	0.84242	108.31	108.12	108.96	-1.6011					28	15	2	0	0	0	0.027455	1	10092	10092		42.396	0	1	70740			15379	36210	12513	12533	17009	17009					0.016725549548937124
GWLAAVLVLAL	11	Unmodified	_GWLAAVLVLAL_					0	0	0			REV__nc|ENSG00000160055|Q8WY98-2|TMEM234	REV__nc|ENSG00000160055|Q8WY98-2|TMEM234	MULTI-MSMS	OvCa9_classI_Rep3	3	563.35302734375	2	563.35516	1124.69577	-1.0854	-0.00061147	-3.2928	-0.001855	-4.3782	-0.0024665	563.3535121729102	117.2	1.8826	116.17	115.84	117.73	-1.0324					63	37	2	0	0	0	0.69331	1	8862	8862		31.955	2.8053	1	2467900	+		15380	28957	12514	12534	17010	17010					0.13840642821878646
GWLAMFIAF	9	Unmodified	_GWLAMFIAF_					0	0	0			REV__ENST00000532094.5_1_11:420655-431830:-|nuORF	REV__ENST00000532094.5_1_11:420655-431830:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.3042602539062	2	528.272781	1054.53101	-1.0854	-0.00057337	-3.0007	-0.0015852	-4.0861	-0.0021586	528.2706777648474	96.131	0.76228	93.705	93.304	94.067	-2.4256					24	14	2	0	0	0	0.027462	1	8458	8458		39.021	0	1	24627	+		15381	27227	12515	12535	17011	17011					0.005925074104425221
GWLAMFIAF	9	Unmodified	_GWLAMFIAF_					0	0	0			REV__ENST00000532094.5_1_11:420655-431830:-|nuORF	REV__ENST00000532094.5_1_11:420655-431830:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	528.272781	1054.53101	-0.85834	-0.00045344	-3.328	-0.0017581	-4.1864	-0.0022116	528.270971089736	94.745	0.78653	93.645	93.114	93.901	-1.0995	-0.080867	-0.00047626	NaN	29.842	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23535	+		15382	27227	12515	12535							0.005925074104425221
GWLPHLACH	9	Unmodified	_GWLPHLACH_					0	0	0			REV__nc|ENSG00000175785|Q86XR5-2|PRIMA1	REV__nc|ENSG00000175785|Q86XR5-2|PRIMA1	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.3248901367188	2	517.255454	1032.49636	0.92571	0.00047883	2.2905	0.0011848	3.2162	0.0016636	517.7576598653463	104.84	0.465	103.49	103.06	103.52	-1.3482					14	8	2	0	0	0	0.027462	1	7324	7324		39.021	14.819	1	8591.3	+		15383	21915	12516	12536	17012	17012					-0.018593156776432807
GWLPLGSL	8	Unmodified	_GWLPLGSL_					0	0	0		nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB	nc|ENSG00000183091|P20929-3|NEB	nc|ENSG00000183091|P20929-3|NEB	MULTI-MSMS	OvCa99_classI_Rep5	1	421.7435607910156	2	421.742171	841.469789	2.7557	0.0011622	0.057818	2.4384E-05	2.8135	0.0011866	421.7420378236919	98.735	2.0174	98.735	98.552	100.57	0					73	48	3	0	0	0	0.64377	1	10916	10916		54.765	0	1	1276900			15384	8049	12517	12537	17013	17013					0.042713187026720334
GWLTAVASLL	10	Unmodified	_GWLTAVASLL_					0	0	0		ENST00000562760.1_1_8:95651187-95651544:-|nuORF	ENST00000562760.1_1_8:95651187-95651544:-|nuORF	ENST00000562760.1_1_8:95651187-95651544:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	516.3275756835938	2	515.800217	1029.58588	1.8518	0.00095518	3.533	0.0018223	5.3849	0.0027775	516.3031397925402	111.48	0.24794	110.37	110.25	110.5	-1.1038					5	4	2	0	0	0	0.026752	1	8096	8096		35.618	1.4457	1	3991.5			15385	13778	12518	12538	17014	17014					0.07227217482704873
GWLYVASDTL	10	Unmodified	_GWLYVASDTL_					0	0	0		ENST00000372310.7_2_1:44462855-44463143:-|nuORF	ENST00000372310.7_2_1:44462855-44463143:-|nuORF	ENST00000372310.7_2_1:44462855-44463143:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	562.7701416015625	2	562.784764	1123.55498	1.142	0.00064267	-0.51367	-0.00028909	0.62828	0.00035359	562.784087172362	123.66	0.61382	122.62	122.36	122.97	-1.0377					11	9	2	0	0	0	0.026552	1	9541	9541		73.975	28.002	1	30312			15386	10975	12519	12539	17015	17015					-0.0018598062217733968
GWLYVASDTL	10	Unmodified	_GWLYVASDTL_					0	0	0		ENST00000372310.7_2_1:44462855-44463143:-|nuORF	ENST00000372310.7_2_1:44462855-44463143:-|nuORF	ENST00000372310.7_2_1:44462855-44463143:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	562.784764	1123.55498	0.30805	0.00017337	1.2617	0.00071007	1.5698	0.00088344	562.7847405653504	123.06	0.54395	122.84	122.56	123.11	-0.21803	0.13749	0.0013336	NaN	73.975	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20634			15387	10975	12519	12539							-0.0018598062217733968
GWPPGLSLIL	10	Unmodified	_GWPPGLSLIL_					0	0	0			REV__ENST00000521423.1_1_5:150411806-150411953:-|nuORF	REV__ENST00000521423.1_1_5:150411806-150411953:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.275146484375	2	526.810585	1051.60662	-1.3295	-0.00070039	4.4209	0.002329	3.0914	0.0016286	526.8128862376046	94.246	1.3139	92.351	91.847	93.161	-1.8956					65	25	4	0	0	0	0.028193	1	6120	6120		85.359	19.556	1	220680	+		15388	27069	12520	12540	17016	17016					0.08287807862393493
GWPPGLSLIL	10	Unmodified	_GWPPGLSLIL_					0	0	0			REV__ENST00000521423.1_1_5:150411806-150411953:-|nuORF	REV__ENST00000521423.1_1_5:150411806-150411953:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.2745361328125	2	526.810585	1051.60662	-1.1659	-0.0006142	4.2422	0.0022348	3.0763	0.0016206	526.812716953429	94.778	1.6944	92.309	91.618	93.312	-2.4685					63	33	4	0	0	0	0.022575	1	8360	8360		106.42	13.272	1	192220	+		15389	27069	12520	12540	17017	17017					0.08287807862393493
GWPVVLLLL	9	Unmodified	_GWPVVLLLL_					0	0	0			REV__ENSG00000142538|ENST00000270631|PTH2	REV__ENSG00000142538|ENST00000270631|PTH2	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.341064453125	2	505.325871	1008.63719	0.014871	7.5146E-06	-4.2306	-0.0021378	-4.2157	-0.0021303	505.3237024434363	132.38	1.7261	132.15	131.83	133.56	-0.22696					82	34	4	0	0	0	0.02744	1	13227	13227		60.404	10.962	1	382540	+		15390	19790	12521	12541	17018	17018					0.13321586247445794
GWQANMILDDG	11	Unmodified	_GWQANMILDDG_					0	0	0		nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	610.2689819335938	2	610.274238	1218.53392	-1.9805	-0.0012087	-4.2562	-0.0025975	-6.2367	-0.0038061	610.2713094889531	149.29	1.066	147.85	147.61	148.68	-1.4344					41	21	3	0	0	0	0.70142	1	14746	14746		29.17	6.1276	1	52935			15391	6935	12522	12542	17019	17019					-0.06660313993370437
GWQANMILDDG	11	Unmodified	_GWQANMILDDG_					0	0	0		nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	610.274238	1218.53392	-3.2866	-0.0020057	-3.2807	-0.0020021	-6.5673	-0.0040079	610.272133041195	148.54	1.0517	148.31	147.77	148.82	-0.22697	0.28502	0.00060293	NaN	29.17	38	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25798			15392	6935	12522	12542							-0.06660313993370437
GWQANMILDDG	11	Unmodified	_GWQANMILDDG_					0	0	0		nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	610.274238	1218.53392	-2.6124	-0.0015943	-3.9049	-0.0023831	-6.5174	-0.0039774	610.2717748351953	148.87	1.0011	147.92	147.5	148.5	-0.9512	-0.10818	-0.00015894	NaN	29.17	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73768			15393	6935	12522	12542							-0.06660313993370437
GWQPVQPNL	9	Unmodified	_GWQPVQPNL_					0	0	0		tr|A0A553SNB9|A0A553SNB9_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_24165PE=4SV=1	tr|A0A553SNB9|A0A553SNB9_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_24165PE=4SV=1	tr|A0A553SNB9|A0A553SNB9_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_24165PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2998046875	2	519.771991	1037.52943	1.9658	0.0010218	0.41202	0.00021416	2.3778	0.0012359	519.7722032574952	86.176	0.84967	86.176	85.912	86.761	0					29	20	2	0	0	0	0.027455	1	9156	9156		51.335	20.832	1	744720			15394	33914	12523	12543	17020	17020					0.012165896460601289
GWQTHKEL	8	Unmodified	_GWQTHKEL_					0	0	0			REV__FNBP1|p.Q503Pfs*31|1|0.07|ENSG00000187239|chr9:129900470-129900471|-/GA|frameshift_variant	REV__FNBP1|p.Q503Pfs*31|1|0.07|ENSG00000187239|chr9:129900470-129900471|-/GA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.31866455078125	2	499.756341	997.498129	-0.60714	-0.00030342	1.0818	0.00054064	0.47466	0.00023721	499.7564299471575	33.705	0.5323	33.705	33.533	34.065	0					18	10	3	0	0	0	0.028476	1	1578	1578		37.159	5.2042	1	90226	+		15395	28140	12524	12544	17021	17021					-0.0007198338804528248
GWQVDQAI	8	Unmodified	_GWQVDQAI_					0	0	0		ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	ENSG00000141759|ENST00000269601|TXNL4A	MULTI-MSMS	OvCa99_classI_Rep5	1	458.7309265136719	2	458.729792	915.445031	0.26888	0.00012334	-0.14143	-6.4879E-05	0.12745	5.8466E-05	458.7296162017016	52.764	0.65041	52.764	52.522	53.172	0					36	14	3	0	0	0	0.37872	1	4144	4144		92.191	3.5478	1	4990000			15396	4940	12525	12545	17022	17022					-0.016073611707156488
GWQVGLVVTV	10	Unmodified	_GWQVGLVVTV_					0	0	0			REV__ENST00000588022.1_1_17:33786947-33787550:-|nuORF	REV__ENST00000588022.1_1_17:33786947-33787550:-|nuORF	MSMS	OvCa9_classI_Rep3	3	529.306640625	2	529.305667	1056.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.89	1	103.54	103.04	104.04	-1.3482								0	0	0	0.10026	1	7328	7328		69.628	4.1622	1		+		15397	27883	12526	12546	17023	17023					0.0707461985698501
GWRPGLAQTAP	11	Unmodified	_GWRPGLAQTAP_					0	0	0		ENST00000590288.1_3_17:74483988-74497434:-|nuORF	ENST00000590288.1_3_17:74483988-74497434:-|nuORF	ENST00000590288.1_3_17:74483988-74497434:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	577.3068237304688	2	577.309272	1152.60399	-0.73929	-0.0004268	-3.4198	-0.0019743	-4.1591	-0.0024011	577.3072792887777	39.495	1.5209	36.569	36.296	37.817	-2.9264					91	29	4	0	0	0	0.4397	1	1653	1653		58.246	1.5252	1	892530			15398	14102	12527	12547	17024	17024					0.033793524574321054
GWRRAPLR	8	Unmodified	_GWRRAPLR_					0	0	0		nc|ENSG00000198689|Q92581|SLC9A6;nc|ENSG00000198689|Q92581-1|SLC9A6	nc|ENSG00000198689|Q92581|SLC9A6	nc|ENSG00000198689|Q92581|SLC9A6	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.295166015625	2	506.301585	1010.58862	-0.39002	-0.00019747	-1.2567	-0.00063629	-1.6468	-0.00083376	506.30071011434677	39.068	0.36029	39.068	38.882	39.242	0					13	7	2	0	0	0	0.028476	1	2274	2274		13.775	0	1	79457			15399	15260	12528	12548	17025	17025					0.08374530450885231
GWRWLTRS	8	Unmodified	_GWRWLTRS_					0	0	0		ENST00000476372.1_1_11:293373-294746:+|nuORF	ENST00000476372.1_1_11:293373-294746:+|nuORF	ENST00000476372.1_1_11:293373-294746:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.2334594726562	2	531.2856	1060.55665	1.4673	0.00077955	2.6576	0.001412	4.1249	0.0021915	531.7868462593439	123.1	0.23223	123.1	122.95	123.18	0					6	4	2	0	0	0	0.028476	1	14192	14192		26.796	4.8362	1	31331			15400	12466	12529	12549	17026	17026					0.028791179770678355
GWSLWKKVK	9	Unmodified	_GWSLWKKVK_					0	0	0		ENST00000592165.1_1_19:33572115-33586722:+|nuORF;ENST00000170564.6_1_19:33572049-33584283:+|nuORF	ENST00000592165.1_1_19:33572115-33586722:+|nuORF	ENST00000592165.1_1_19:33572115-33586722:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	566.3265991210938	2	566.337301	1130.66005	-0.99415	-0.00056302	-2.5542	-0.0014465	-3.5483	-0.0020096	566.3356882188241	101.75	2.3041	100.23	99.583	101.89	-1.5211					96	43	4	0	0	0	0.50149	1	6962	6962		42.396	0.96952	1	254070			15401	9642	12530	12550	17027	17027					0.09994605364909148
GWSLYLDKL	9	Unmodified	_GWSLYLDKL_					0	0	0			REV__ENSG00000082516|ENST00000285873|GEMIN5	REV__ENSG00000082516|ENST00000285873|GEMIN5	MULTI-MSMS	OvCa9_classI_Rep2	2	547.7957153320312	2	547.797675	1093.5808	0.050846	2.7854E-05	-4.3715	-0.0023947	-4.3207	-0.0023669	547.7953012844869	106.44	1.5786	106.13	105.78	107.36	-0.30836					100	31	6	0	0	0	0.28934	1	9918	9918		64.207	0.67341	1	280320	+		15402	17088	12531	12551	17028	17028					0.03774913620077314
GWSLYLDKL	9	Unmodified	_GWSLYLDKL_					0	0	0			REV__ENSG00000082516|ENST00000285873|GEMIN5	REV__ENSG00000082516|ENST00000285873|GEMIN5	MULTI-MSMS	OvCa9_classI_Rep3	3	547.7958374023438	2	547.797675	1093.5808	-0.21256	-0.00011644	-4.2622	-0.0023348	-4.4747	-0.0024512	547.7952386347279	107.34	1.5843	106.08	105.81	107.39	-1.267					109	30	6	0	0	0	0.10502	1	7625	7625		95.815	10.654	1	324320	+		15403	17088	12531	12551	17029	17029					0.03774913620077314
GWSLYLDKL	9	Unmodified	_GWSLYLDKL_					0	0	0			REV__ENSG00000082516|ENST00000285873|GEMIN5	REV__ENSG00000082516|ENST00000285873|GEMIN5	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.7962036132812	2	547.797675	1093.5808	-2.3764	-0.0013018	-2.4021	-0.0013159	-4.7786	-0.0026177	547.7963335506997	107.88	1.532	106	105.74	107.27	-1.8785					72	30	3	0	0	0	0.055627	1	9868	9868		115.49	37.23	1	262780	+		15404	17088	12531	12551	17030	17030					0.03774913620077314
GWSYGGYLSL	10	Unmodified	_GWSYGGYLSL_					0	0	0		nc|ENSG00000074603|Q6V1X1-6|DPP8;ENSG00000074603|ENST00000300141|DPP8;nc|ENSG00000074603|Q6V1X1|DPP8;nc|ENSG00000074603|Q6V1X1-5|DPP8;ENST00000560048.2_1_15:65743312-65748006:-|nuORF	nc|ENSG00000074603|Q6V1X1-6|DPP8	nc|ENSG00000074603|Q6V1X1-6|DPP8	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.3375854492188	2	551.763832	1101.51311	2.2357	0.0012336	-2.8921	-0.0015957	-0.65635	-0.00036215	551.7616664389056	84.325	0.42204	84.325	84.009	84.431	0					12	9	2	0	0	0	0.026665	1	8792	8792		26.693	0	1	196800			15405	1513	12532	12552	17031	17031					-0.033585363107022204
GWTADKVLKV	10	Unmodified	_GWTADKVLKV_					0	0	0		tr|A0A553SLC9|A0A553SLC9_NIACIDNAtopoisomeraseOS=NialliacirculansOX=1397GN=CEQ21_20390PE=3SV=1	tr|A0A553SLC9|A0A553SLC9_NIACIDNAtopoisomeraseOS=NialliacirculansOX=1397GN=CEQ21_20390PE=3SV=1	tr|A0A553SLC9|A0A553SLC9_NIACIDNAtopoisomeraseOS=NialliacirculansOX=1397GN=CEQ21_20390PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.828125	2	558.824224	1115.63389	1.9377	0.0010828	-1.6903	-0.00094458	0.24739	0.00013825	558.8232419648524	96.826	1.5108	94.4	94.015	95.526	-2.4256					80	29	4	0	0	0	0.55109	1	8573	8573		47.96	2.9373	1	470520			15406	33709	12533	12553	17032	17032					0.08070291402759722
GWTFWEKSV	9	Unmodified	_GWTFWEKSV_					0	0	0			REV__tr|A0A553STJ3|A0A553STJ3_NIACILURP-one-relatedfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05085PE=3SV=1	REV__tr|A0A553STJ3|A0A553STJ3_NIACILURP-one-relatedfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05085PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	571.2683715820312	2	570.279649	1138.54475	-0.65247	-0.00037209	3.7171	0.0021198	3.0646	0.0017477	570.2825096284855	124.26	0.61704	122.86	122.67	123.28	-1.3908					19	11	3	0	0	0	0.027462	1	11781	11781		21.96	0	1	29775	+		15407	30973	12534	12554	17033	17033					-0.018985435567856257
GWTMSGIFEN	10	Unmodified	_GWTMSGIFEN_					0	0	0		nc|ENSG00000101670|Q9Y5X9-2|LIPG;ENSG00000101670|ENST00000261292|LIPG	nc|ENSG00000101670|Q9Y5X9-2|LIPG	nc|ENSG00000101670|Q9Y5X9-2|LIPG	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.3854370117188	2	571.252774	1140.491	1.6221	0.0009266	3.7807	0.0021597	5.4027	0.0030863	571.2547219856315	126.67	0.67969	126.67	126.42	127.1	0					24	14	3	0	0	0	0.026802	1	14688	14688		42.396	3.1433	1	239980			15408	2195	12535	12555	17034	17034					-0.07363084050757607
GWTPHEAKL	9	Unmodified	_GWTPHEAKL_					0	0	0			REV__nc|ENSG00000095303|P23219-4|PTGS1	REV__nc|ENSG00000095303|P23219-4|PTGS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.773193359375	2	519.771991	1037.52943	0.17431	9.0599E-05	3.6471	0.0018956	3.8214	0.0019862	519.7738144415306	128.63	2.6649	127.17	126.07	128.73	-1.4565					98	52	4	0	0	0	0.24951	1	12298	12298		68.787	7.8149	1	448430	+		15409	17286	12536	12556	17035	17035					0.012165896460373915
GWVEHKQEI	9	Unmodified	_GWVEHKQEI_					0	0	0			REV__ENST00000564124.5_1_16:48580029-48653834:-|nuORF	REV__ENST00000564124.5_1_16:48580029-48653834:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	563.286865234375	2	563.288005	1124.56146	0.62638	0.00035283	-4.4164	-0.0024877	-3.79	-0.0021349	563.285355859724	40.778	1.2306	38.068	37.848	39.078	-2.7097					56	24	4	0	0	0	0.31747	1	2107	2107		60.972	13.315	1	329850	+		15410	17581	12537	12557	17036	17036					0.004159573291872221
GWVGLSFPI	9	Unmodified	_GWVGLSFPI_					0	0	0			REV__ENST00000509566.1_1_4:844107-866085:-|nuORF	REV__ENST00000509566.1_1_4:844107-866085:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.2873840332031	2	488.268553	974.522553	-1.9278	-0.00094127	-3.1847	-0.001555	-5.1125	-0.0024963	488.2664168076709	49.402	0.72792	46.26	45.675	46.403	-3.1416					17	13	2	0	0	0	0.027456	1	2749	2749		35.201	0	1	29207	+		15411	26929	12538	12558	17037	17037					0.03427276765478382
GWYECGVSIP	10	Unmodified	_GWYECGVSIP_					0	0	0		ENSG00000164694|ENST00000297267|FNDC1;nc|ENSG00000164694|Q4ZHG4-2|FNDC1	ENSG00000164694|ENST00000297267|FNDC1	ENSG00000164694|ENST00000297267|FNDC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.2991333007812	2	555.749867	1109.48518	1.4273	0.0007932	3.6026	0.0020021	5.0299	0.0027953	555.7518774676978	149.93	0.30101	149.93	149.79	150.1	0					10	5	2	0	0	0	0.026956	1	17553	17553		34.173	0	1	19356			15412	6478	12539	12559	17038	17038					-0.065181825624677
GYADIVQLL	9	Unmodified	_GYADIVQLL_					0	0	0		ENSG00000134996|ENST00000346234|OSTF1	ENSG00000134996|ENST00000346234|OSTF1	ENSG00000134996|ENST00000346234|OSTF1	MULTI-MSMS	OvCa99_classI_Rep5	1	496.2779846191406	2	496.276575	990.538597	0.76517	0.00037973	1.6204	0.00080415	2.3855	0.0011839	496.2772247996838	153.38	1.4737	153.38	153.05	154.52	0					56	29	4	0	0	0	0.019428	1	17976	17976		147.69	44.92	1	626080			15413	4349	12540	12560	17039	17039					0.04294938211717181
GYADRVVEY	9	Unmodified	_GYADRVVEY_					0	0	0			REV__CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	REV__CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	536.2590942382812	2	536.258914	1070.50327	-1.821	-0.00097655	0.68438	0.00036701	-1.1367	-0.00060954	536.2591895104723	85.72	2.0297	84.229	83.752	85.781	-1.4906					113	39	4	0	0	0	0.37135	1	7446	7446		54.776	1.8396	1	557560	+		15414	15732	12541	12561	17040	17040					-0.029157243160852886
GYATWLGLVL	10	Unmodified	_GYATWLGLVL_					0	0	0		ENST00000537502.5_1_20:24988139-24988247:-|nuORF	ENST00000537502.5_1_20:24988139-24988247:-|nuORF	ENST00000537502.5_1_20:24988139-24988247:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.7706909179688	2	546.808042	1091.60153	0.31334	0.00017134	-4.3411	-0.0023738	-4.0278	-0.0022024	547.3075790147906	71.977	0.62271	71.977	71.668	72.291	0					19	14	2	0	0	0	0.026697	1	7016	7016		29.15	0	1	361650			15415	13407	12542	12562	17041	17041					0.0593950399975256
GYDLLKTAE	9	Unmodified	_GYDLLKTAE_					0	0	0			REV__tr|A0A553SHK9|A0A553SHK9_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_13120PE=3SV=1	REV__tr|A0A553SHK9|A0A553SHK9_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_13120PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.82830810546875	2	505.263665	1008.51278	-0.39459	-0.00019937	-3.8558	-0.0019482	-4.2503	-0.0021475	505.2620487606891	78.826	0.56519	76.075	75.853	76.418	-2.7514					28	11	3	0	0	0	0.027462	1	6339	6339		37.159	0	1	109750	+		15416	29812	12543	12563	17042	17042					0.008860439694331035
GYEIIKSVK	9	Unmodified	_GYEIIKSVK_					0	0	0		tr|A0A7D7A3C7|A0A7D7A3C7_9CLOTPadRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_06235PE=4SV=1	tr|A0A7D7A3C7|A0A7D7A3C7_9CLOTPadRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_06235PE=4SV=1	tr|A0A7D7A3C7|A0A7D7A3C7_9CLOTPadRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_06235PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.3328857421875	2	518.8055	1035.59645	-0.2021	-0.00010485	-0.51365	-0.00026649	-0.71576	-0.00037134	518.8050398727772	77.278	1.406	75.489	74.478	75.884	-1.7894					51	26	3	0	0	0	0.027441	1	6353	6353		37.159	3.6435	1	203060			15417	36113	12544	12564	17043	17043					0.08007200137149084
GYFLLKRGV	9	Unmodified	_GYFLLKRGV_					0	0	0		ENST00000435074.5_1_6:33080250-33086274:+|nuORF	ENST00000435074.5_1_6:33080250-33086274:+|nuORF	ENST00000435074.5_1_6:33080250-33086274:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.3405151367188	2	526.816202	1051.61785	-3.0309	-0.0015967	2.2719	0.0011969	-0.75906	-0.00039989	527.3193702150526	87.971	1.3594	85.369	84.977	86.336	-2.6027					40	26	2	0	0	0	0.027462	1	7477	7477		42.474	8.9589	1	233520			15418	11855	12545	12565	17044	17044					0.09410629956505545
GYGIWPALF	9	Unmodified	_GYGIWPALF_					0	0	0			REV__nc|ENSG00000187048|Q02928-2|CYP4A11	REV__nc|ENSG00000187048|Q02928-2|CYP4A11	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.8089599609375	2	512.268553	1022.52255	-0.29871	-0.00015302	0.71433	0.00036593	0.41562	0.00021291	512.269033914273	77.774	0.48359	74.957	74.632	75.116	-2.8165					14	9	2	0	0	0	0.027462	1	6233	6233		49.211	15.038	1	45916	+		15419	22629	12546	12566	17045	17045					0.012192767654710224
GYGIWPALF	9	Unmodified	_GYGIWPALF_					0	0	0			REV__nc|ENSG00000187048|Q02928-2|CYP4A11	REV__nc|ENSG00000187048|Q02928-2|CYP4A11	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.8089599609375	2	512.268553	1022.52255	-0.1173	-6.009E-05	-0.061914	-3.1716E-05	-0.17921	-9.1806E-05	512.768363513362	78.209	1.3843	75.393	74.777	76.162	-2.8165					74	28	5	0	0	0	0.027462	1	6233	6233		49.211	15.038	1	212650	+		15420	22629	12546	12566	17046	17046					0.012192767654710224
GYGIWPALF	9	Unmodified	_GYGIWPALF_					0	0	0			REV__nc|ENSG00000187048|Q02928-2|CYP4A11	REV__nc|ENSG00000187048|Q02928-2|CYP4A11	MULTI-MATCH	OvCa9_classI_Rep2	2		2	512.268553	1022.52255	-0.41063	-0.00021035	0.041497	2.1258E-05	-0.36913	-0.00018909	512.7684791079738	77.324	1.4582	75.535	74.741	76.199	-1.7894	0.12982	-0.003328	NaN	49.211	71	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57136	+		15421	22629	12546	12566							0.012192767654710224
GYGPLPLNHH	10	Unmodified	_GYGPLPLNHH_					0	0	0			REV__nc|ENSG00000135297|Q9Y2Z2-5|MTO1	REV__nc|ENSG00000135297|Q9Y2Z2-5|MTO1	MULTI-MSMS	OvCa9_classI_Rep2	2	552.7850952148438	2	552.78289	1103.55123	1.1774	0.00065086	4.3694	0.0024153	5.5468	0.0030662	552.7852656912593	30.884	0.78753	28.174	28.002	28.789	-2.7097					23	15	2	0	0	0	0.69986	1	889	889		30.504	1.3541	1	54276	+		15422	28868	12547	12567	17047	17047					0.003593943945816136
GYGRPRQI	8	Unmodified	_GYGRPRQI_					0	0	0		ENSG00000149591|ENST00000392951|TAGLN	ENSG00000149591|ENST00000392951|TAGLN	ENSG00000149591|ENST00000392951|TAGLN	MULTI-MSMS	OvCa99_classI_Rep5	1	473.76458740234375	2	473.764501	945.514448	-0.59409	-0.00028146	-0.27896	-0.00013216	-0.87304	-0.00041362	473.764393322028	39.779	2.609	39.779	39.547	42.156	0					136	58	4	0	0	0	0.49583	2	2380	2352;2380		77.944	6.5659	1	28423000			15423	5478	12548	12568	17048;17049	17049					0.03951142568701016
GYHLLLINETA	11	Unmodified	_GYHLLLINETA_					0	0	0		tr|A0A553SSY4|A0A553SSY4_NIACILacIfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03915PE=4SV=1	tr|A0A553SSY4|A0A553SSY4_NIACILacIfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03915PE=4SV=1	tr|A0A553SSY4|A0A553SSY4_NIACILacIfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03915PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	622.337646484375	2	622.337695	1242.66084	-4.3656	-0.0027169	2.4684	0.0015362	-1.8972	-0.0011807	622.3390875012716	154.54	0.85817	153.09	152.8	153.66	-1.4516					54	19	3	0	0	0	0.71191	1	15317	15317		25.574	2.9944	1	149970			15424	34434	12549	12569	17050	17050					0.04921355223291357
GYIERPQLI	9	Unmodified	_GYIERPQLI_					0	0	0		nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	MULTI-MSMS	OvCa99_classI_Rep5	1	544.81103515625	2	544.808574	1087.60259	1.8176	0.00099023	0.045018	2.4526E-05	1.8626	0.0010148	544.8086733906705	92.581	1.207	92.581	92.301	93.508	0					54	19	4	0	0	0	0.11471	2	10006	10006;10037		93.195	19.221	1	10099000			15425	6448	12550	12570	17051;17052	17051					0.062297183686723656
GYIHVTQTF	9	Unmodified	_GYIHVTQTF_					0	0	0		ENSG00000105374|ENST00000221978|NKG7	ENSG00000105374|ENST00000221978|NKG7	ENSG00000105374|ENST00000221978|NKG7	MULTI-MSMS	OvCa99_classI_Rep5	1	533.2696533203125	2	533.271824	1064.5291	2.332	0.0012436	-0.19541	-0.00010421	2.1366	0.0011394	533.2716086036133	86.907	0.33404	86.907	86.679	87.013	0					23	7	4	0	0	0	0.11171	1	9173	9173		94.006	42.671	1	3893900			15426	2449	12551	12571	17053	17053					-0.0005883007381726202
GYIKLKKKV	9	Unmodified	_GYIKLKKKV_					0	0	0			REV__ENST00000527958.5_1_11:117041336-117041564:+|nuORF	REV__ENST00000527958.5_1_11:117041336-117041564:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	538.863037109375	2	538.863152	1075.71175	-0.23326	-0.0001257	-0.99858	-0.0005381	-1.2318	-0.00066379	538.862877379651	131.84	7.1203	131.62	131.3	138.42	-0.22697					401	145	6	0	0	0	0.6959	1	13584	13584		19.36	2.8868	1	12803000	+		15427	27161	12552	12572	17054	17054					0.17692349058779655
GYIKLWEE	8	Unmodified	_GYIKLWEE_					0	0	0			REV__tr|A0A553SNK4|A0A553SNK4_NIACISite-specificintegraseOS=NialliacirculansOX=1397GN=CEQ21_24580PE=3SV=1	REV__tr|A0A553SNK4|A0A553SNK4_NIACISite-specificintegraseOS=NialliacirculansOX=1397GN=CEQ21_24580PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.3328857421875	2	519.26875	1036.52295	-0.22254	-0.00011556	-3.3466	-0.0017378	-3.5691	-0.0018533	519.2667570494757	77.159	1.1444	75.37	74.793	75.937	-1.7894					45	21	3	0	0	0	0.028476	1	6353	6353		33.516	4.366	1	108690	+		15428	30429	12553	12573	17055	17055					0.006146516946500924
GYINLPRRTC	10	Unmodified	_GYINLPRRTC_					0	0	0			REV__nc|ENSG00000100425|O95696|BRD1	REV__nc|ENSG00000100425|O95696|BRD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	596.8185424804688	2	596.816407	1191.61826	-0.18377	-0.00010967	-0.2095	-0.00012503	-0.39327	-0.00023471	596.8162215131191	55.836	1.824	52.541	51.906	53.73	-3.2944					104	35	4	0	0	0	0.66944	1	3501	3501		33.922	1.1711	1	1109000	+		15429	17415	12554	12574	17056	17056					0.030116816140662195
GYIPVEGAWTF	11	Unmodified	_GYIPVEGAWTF_					0	0	0		ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	MULTI-SECPEP	OvCa9_classI_Rep2	2	413.8951110839844	3	413.873001	1238.59717	0.35633	0.00014747	0.41773	0.00017289	0.77406	0.00032036	413.87192757859543	46.529	0.29734	43.819	43.596	43.894	-2.7097					6	5	2	0	0	0	0.025714	1	2778	2778		38.754	2.436	1	2991.5			15430	3379	12555	12575	17057	17057					-0.012580052138218889
GYIQKKKEL	9	Unmodified	_GYIQKKKEL_					0	0	0		RB1-FNDC3A|1|fusion;RB1|p.Y446Tfs*11|1|0.72|ENSG00000139687|chr13:48379597-48379597|T/-|frameshift_variant;RB1|p.I441Lfs*16|1|0.9|ENSG00000139687|chr13:48377021-48377021|A/-|frameshift_variant;RB1|p.G423Dfs*34|1|0.59|ENSG00000139687|chr13:48376969-48376969|G/-|frameshift_variant;RB1|p.L486Ffs*9|1|0.8|ENSG00000139687|chr13:48380201-48380201|A/-|frameshift_variant;RB1|p.F526Lfs*6|1|0.53|ENSG00000139687|chr13:48381322-48381322|C/-|frameshift_variant;RB1|p.C553Wfs*53|1|0.8|ENSG00000139687|chr13:48381404-48381419|ATGTGAACATCGAATC/-|frameshift_variant;RB1|p.L797*|1|0.5|ENSG00000139687|chr13:48465269-48465285|TACGGATTCCTGGAGGG/-|frameshift_variant;ITM2B-RB1|4|fusion;ITM2B-RB1|1|fusion;ENSG00000139687|ENST00000267163|RB1;ENST00000525036.1_1_13:48877982-48934322:+|nuORF	RB1-FNDC3A|1|fusion;ENST00000525036.1_1_13:48877982-48934322:+|nuORF	RB1-FNDC3A|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8294677734375	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.56889	1	11975	11975		35.618	5.1146	1	308210			15431	15542;13179	12556	12576	17058	17058					0.10094577919812764
GYIQMYVR	8	Unmodified	_GYIQMYVR_					0	0	0			REV__ENST00000335730.6_1_18:44089558-44181581:-|nuORF	REV__ENST00000335730.6_1_18:44089558-44181581:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.2813110351562	2	515.262945	1028.51134	-1.0878	-0.00056049	-3.766	-0.0019405	-4.8538	-0.002501	515.261082728101	41.326	0.62183	38.345	38.075	38.696	-2.9804					16	11	2	0	0	0	0.028476	1	1847	1847		25.45	2.4077	1	16168	+		15432	21263	12557	12577	17059	17059					-0.0017786860032629193
GYIRCCCIAL	10	Unmodified	_GYIRCCCIAL_					0	0	0			REV__ENST00000424132.1_1_2:227729714-227729801:+|nuORF	REV__ENST00000424132.1_1_2:227729714-227729801:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	557.7647094726562	2	557.76394	1113.51333	2.1207	0.0011829	-0.81602	-0.00045515	1.3047	0.00072773	557.7634203184164	129.48	0.65254	129.48	129.17	129.82	0					30	13	3	0	0	0	0.50656	1	15023	15023		53.351	0.41475	1	297420	+		15433	25639	12558	12578	17060	17060					-0.038888991784006066
GYISKKKGQRT	11	Unmodified	_GYISKKKGQRT_					0	0	0		tr|A0A7D6VU38|A0A7D6VU38_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_00265PE=4SV=1	tr|A0A7D6VU38|A0A7D6VU38_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_00265PE=4SV=1	tr|A0A7D6VU38|A0A7D6VU38_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_00265PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3685302734375	2	633.369861	1264.72517	-4.5141	-0.0028591	3.4388	0.002178	-1.0753	-0.00068108	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.7246	1	15589	15589		20.837	1.7336	1	369460			15434	35161	12559	12579	17061	17061					0.1033955510006308
GYISSAFLF	9	Unmodified	_GYISSAFLF_					0	0	0		ENSG00000131471|ENST00000308423|AOC3;nc|ENSG00000131471|Q16853-2|AOC3	ENSG00000131471|ENST00000308423|AOC3	ENSG00000131471|ENST00000308423|AOC3	MULTI-MSMS	OvCa99_classI_Rep5	1	502.7594299316406	2	502.758018	1003.50148	0.70263	0.00035325	0.81437	0.00040943	1.517	0.00076268	502.7583164174825	152.28	0.67015	152.28	151.97	152.64	0					35	16	3	0	0	0	0.17908	1	17827	17827		79.939	28.604	1	279200			15435	4069	12560	12580	17062	17062					-0.00012733334040149202
GYITPVSTLVK	11	Unmodified	_GYITPVSTLVK_					0	0	0		tr|A0A553SMQ9|A0A553SMQ9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_23045PE=4SV=1	tr|A0A553SMQ9|A0A553SMQ9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_23045PE=4SV=1	tr|A0A553SMQ9|A0A553SMQ9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_23045PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3433837890625	2	589.344989	1176.67542	-3.0463	-0.0017953	-0.38122	-0.00022467	-3.4276	-0.00202	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.72466	1	15051	15051		19.997	2.6318	1	272220			15436	33864	12561	12581	17063	17063					0.09415427371413898
GYKELVKKK	9	Unmodified	_GYKELVKKK_					0	0	0			REV__DOCK4|p.F1456Lfs*4|1|0.11|ENSG00000128512|chr7:111755521-111755536|ACGCTTTTCCACTTCA/-|frameshift_variant	REV__DOCK4|p.F1456Lfs*4|1|0.11|ENSG00000128512|chr7:111755521-111755536|ACGCTTTTCCACTTCA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	546.840087890625	2	546.842416	1091.67028	-7.0439	-0.0038519	3.2968	0.0018028	-3.7471	-0.0020491	546.8440760274939	158.88	1.6198	157.61	157.26	158.88	-1.267					96	31	5	0	0	0	0.56889	1	13785	13785		35.618	5.3006	1	890150	+		15437	16330	12562	12582	17064	17064					0.12811168299458586
GYKILVKQAS	10	Unmodified	_GYKILVKQAS_					0	0	0			REV__nc|ENSG00000179299|Q8NE18-3|NSUN7	REV__nc|ENSG00000179299|Q8NE18-3|NSUN7	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8302612304688	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.67931	1	14390	14390		32.812	6.1195	1	245610	+		15438	22118	12563	12583	17065	17065					0.10094577919812764
GYKKLEQLK	9	Unmodified	_GYKKLEQLK_					0	0	0			REV__ENSG00000164070|ENST00000296464|HSPA4L	REV__ENSG00000164070|ENST00000296464|HSPA4L	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8294067382812	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.63422	1	14402	14402		27.882	0	1	245610	+		15439	20934	12564	12584	17066	17066					0.10094577919790026
GYKKLEQLK	9	Unmodified	_GYKKLEQLK_					0	0	0			REV__ENSG00000164070|ENST00000296464|HSPA4L	REV__ENSG00000164070|ENST00000296464|HSPA4L	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8299560546875	2	553.832049	1105.64954	0.13277	7.3535E-05	-3.4573	-0.0019148	-3.3245	-0.0018412	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.64427	1	14181	14181		26.693	1.2427	1	400120	+		15440	20934	12564	12584	17067	17067					0.10094577919790026
GYKLGKNAVL	10	Unmodified	_GYKLGKNAVL_					0	0	0		tr|A0A7D6VQN0|A0A7D6VQN0_9CLOTPTSsystemmannose/fructose/sorbosefamilytransportersubunitIIDOS=ClostridiumintestinaleOX=36845GN=HZF06_04035PE=4SV=1	tr|A0A7D6VQN0|A0A7D6VQN0_9CLOTPTSsystemmannose/fructose/sorbosefamilytransportersubunitIIDOS=ClostridiumintestinaleOX=36845GN=HZF06_04035PE=4SV=1	tr|A0A7D6VQN0|A0A7D6VQN0_9CLOTPTSsystemmannose/fructose/sorbosefamilytransportersubunitIIDOS=ClostridiumintestinaleOX=36845GN=HZF06_04035PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8165893554688	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.7759	1	11660	11660		21.96	2.8564	1	178650			15441	34861	12565	12585	17068	17068					0.09498308748334239
GYKNKINIS	9	Unmodified	_GYKNKINIS_					0	0	0			REV__ENSG00000036448|ENST00000262113|MYOM2	REV__ENSG00000036448|ENST00000262113|MYOM2	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.30810546875	2	518.792924	1035.57129	-0.51969	-0.00026961	1.0376	0.00053831	0.51793	0.0002687	518.7932243107656	60.403	0.89375	57.633	57.082	57.976	-2.7702					26	16	2	0	0	0	0.027462	1	4483	4483		9.7057	0	1	77540	+		15442	16605	12566	12586	17069	17069					0.05493145334571636
GYKSVLKITMT	11	Unmodified	_GYKSVLKITMT_					0	0	0		TENM3|p.D1682Efs*31|1|0.11|ENSG00000218336|chr4:182773624-182773625|-/AATGGGCCTGGGGTCAGCTGCACAAAAGTCCCAG|frameshift_variant;ENSG00000218336|ENST00000511685|TENM3;ENST00000502950.1_1_4:183601480-183676413:+|nuORF	TENM3|p.D1682Efs*31|1|0.11|ENSG00000218336|chr4:182773624-182773625|-/AATGGGCCTGGGGTCAGCTGCACAAAAGTCCCAG|frameshift_variant	TENM3|p.D1682Efs*31|1|0.11|ENSG00000218336|chr4:182773624-182773625|-/AATGGGCCTGGGGTCAGCTGCACAAAAGTCCCAG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.9082946777344	3	414.237175	1239.68969	0.18201	7.5396E-05	0.83398	0.00034547	1.016	0.00042086	414.5727785234067	42.425	0.42723	42.425	42.156	42.583	0					14	9	2	0	0	0	0.026033	1	2698	2698		22.562	16.241	1	103720			15443	9218	12567	12587	17070	17070					0.07943756528038648
GYKVQLLQP	9	Unmodified	_GYKVQLLQP_					0	0	0			REV__LCTL|p.W241Gfs*20|1|0.09|ENSG00000188501|chr15:66558022-66558022|G/-|frameshift_variant	REV__LCTL|p.W241Gfs*20|1|0.09|ENSG00000188501|chr15:66558022-66558022|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3038940429688	2	523.305667	1044.59678	-2.1227	-0.0011108	-1.8084	-0.00094634	-3.9311	-0.0020572	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.6653	1	11514	11514		24.203	0	1	183010	+		15444	22714	12568	12588	17071	17071					0.0762661985700106
GYLADPAKF	9	Unmodified	_GYLADPAKF_					0	0	0		ENSG00000137547|ENST00000260102|MRPL15	ENSG00000137547|ENST00000260102|MRPL15	ENSG00000137547|ENST00000260102|MRPL15	MULTI-MSMS	OvCa99_classI_Rep5	1	491.2568664550781	2	491.255643	980.496732	2.4232	0.0011904	0.14191	6.9716E-05	2.5651	0.0012601	491.25555028457035	88.757	0.61104	88.757	88.508	89.119	0					34	14	4	0	0	0	0.16562	1	9439	9439		82.241	10.945	1	2909400			15445	4595	12569	12589	17072	17072					0.005703825231876181
GYLAFLIPMQI	11	Unmodified	_GYLAFLIPMQI_					0	0	0			REV__tr|A0A7D6VQW4|A0A7D6VQW4_9CLOTMembraneproteininsertaseYidCOS=ClostridiumintestinaleOX=36845GN=yidCPE=3SV=1	REV__tr|A0A7D6VQW4|A0A7D6VQW4_9CLOTMembraneproteininsertaseYidCOS=ClostridiumintestinaleOX=36845GN=yidCPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	634.2939453125	2	633.35176	1264.68897	2.1599	0.001368	-2.509	-0.0015891	-0.34914	-0.00022113	633.350063039065	128.12	0.51323	128.12	127.81	128.32	0					13	10	2	0	0	0	0.025681	1	14837	14837		26.693	5.0072	1	49150	+		15446	31363	12570	12590	17073	17073					0.06720961879000242
GYLGSLVV	8	Unmodified	_GYLGSLVV_					0	0	0		L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|97|1|anti-sense	L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|97|1|anti-sense	L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|97|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	404.2331848144531	2	404.234179	806.453805	0.13742	5.5549E-05	-3.8737	-0.0015659	-3.7363	-0.0015103	404.2323701373438	135.34	2.116	134.24	133.77	135.88	-1.1076					82	42	4	0	0	0	0.75724	1	10947	10947		23.037	1.3344	1	396570			15447	14548	12571	12591	17074	17074					0.04283612465758324
GYLINGQSI	9	Unmodified	_GYLINGQSI_					0	0	0		tr|A0A7D7A3Q7|A0A7D7A3Q7_9CLOTSH3domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00755PE=3SV=1	tr|A0A7D7A3Q7|A0A7D7A3Q7_9CLOTSH3domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00755PE=3SV=1	tr|A0A7D7A3Q7|A0A7D7A3Q7_9CLOTSH3domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00755PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	482.76263427734375	2	482.758549	963.502546	2.1392	0.0010327	1.1547	0.00055742	3.2938	0.0015901	482.7588804234167	57.803	3.1186	54.676	53.456	56.575	-3.1264					158	85	3	0	0	0	0.65371	1	1653	1653		25.574	0.12388	1	89902			15448	36126	12572	12592	17075	17075					0.019334810348709652
GYLIVSTLL	9	Unmodified	_GYLIVSTLL_					0	0	0		ENST00000375896.8_1_6:31632737-31632893:-|nuORF	ENST00000375896.8_1_6:31632737-31632893:-|nuORF	ENST00000375896.8_1_6:31632737-31632893:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	489.79541015625	2	489.797143	977.579734	-0.22979	-0.00011255	-2.6264	-0.0012864	-2.8562	-0.001399	489.795669737206	39.474	1.0919	36.764	36.459	37.551	-2.7097					56	21	4	0	0	0	0.59983	1	1938	1938		31.955	5.2619	1	203380			15449	11062	12573	12593	17076	17076					0.09004699251204329
GYLLQKVISNL	11	Unmodified	_GYLLQKVISNL_					0	0	0		ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	ENSG00000132953|ENST00000255305|XPO4	MULTI-MSMS	OvCa9_classI_Rep2	2	624.3749389648438	2	624.371538	1246.72852	-5.6311	-0.0035159	3.8359	0.002395	-1.7953	-0.0011209	624.3738220162429	161.95	0.61571	161.72	161.43	162.05	-0.22696					21	11	2	0	0	0	0.69735	2	16517	16504;16517		23.523	6.8053	1	20661			15450	4186	12574	12594	17077;17078	17078					0.11502805154100315
GYLPNQLF	8	Unmodified	_GYLPNQLF_					0	0	0		ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-3|DDX1	ENSG00000079785|ENST00000233084|DDX1	ENSG00000079785|ENST00000233084|DDX1	MULTI-MSMS	OvCa99_classI_Rep5	1	476.2514343261719	2	476.25036	950.486168	1.1598	0.00055237	0.83927	0.0003997	1.9991	0.00095208	476.25068368371444	132.63	0.90125	132.63	132.09	132.99	0					37	18	3	0	0	0	0.28613	1	15414	15414		109.7	26.417	1	283540			15451	1620	12575	12595	17079	17079					0.008943998687641397
GYLPNQLFR	9	Unmodified	_GYLPNQLFR_					0	0	0		ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-3|DDX1	ENSG00000079785|ENST00000233084|DDX1	ENSG00000079785|ENST00000233084|DDX1	MULTI-MSMS	OvCa99_classI_Rep5	1	554.3026733398438	2	554.300916	1106.58728	-0.83338	-0.00046195	-2.1127	-0.001171	-2.946	-0.001633	554.2998644284503	103.6	0.93127	103.6	103.3	104.24	0					72	21	6	0	0	0	0.027416	2	11572	11572;11608		138.24	52.883	1	32808000			15452	1620	12576	12596	17080;17081	17080					0.038248515714712994
GYLPNQLFR	9	Unmodified	_GYLPNQLFR_					0	0	0		ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-3|DDX1	ENSG00000079785|ENST00000233084|DDX1	ENSG00000079785|ENST00000233084|DDX1	MULTI-MSMS	OvCa9_classI_Rep2	2	554.3013305664062	2	554.300916	1106.58728	-0.036139	-2.0032E-05	-0.76059	-0.00042159	-0.79673	-0.00044163	554.3003422566957	103.73	2.1781	103.15	102.88	105.06	-0.57639					108	43	4	0	0	0	0.042513	5	9589	9582;9589;9595;9601;9607		124.59	41.844	1	702480			15453	1620	12576	12596	17082;17083;17084;17085;17086	17083					0.038248515714712994
GYLPNQLFR	9	Unmodified	_GYLPNQLFR_					0	0	0		ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-3|DDX1	ENSG00000079785|ENST00000233084|DDX1	ENSG00000079785|ENST00000233084|DDX1	MULTI-MSMS	OvCa9_classI_Rep3	3	554.3021850585938	2	554.300916	1106.58728	-0.077498	-4.2957E-05	-0.50695	-0.000281	-0.58444	-0.00032396	554.3004772037835	104.48	1.6101	103.05	102.76	104.37	-1.4347					93	30	5	0	0	0	0.062324	1	7286	7286		111.65	33.385	1	853750			15454	1620	12576	12596	17087	17087					0.038248515714712994
GYLPNQLFR	9	Unmodified	_GYLPNQLFR_					0	0	0		ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-3|DDX1	ENSG00000079785|ENST00000233084|DDX1	ENSG00000079785|ENST00000233084|DDX1	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.3009643554688	2	554.300916	1106.58728	0.046335	2.5684E-05	-0.63528	-0.00035213	-0.58894	-0.00032645	554.3004517551506	105.14	1.6101	103.13	102.85	104.46	-2.0161					92	31	4	0	0	0	0.22961	3	9551	9536;9551;9563		71.296	12.452	1	819380			15455	1620	12576	12596	17088;17089;17090	17089					0.038248515714712994
GYLVNTRYGI	10	Unmodified	_GYLVNTRYGI_					0	0	0			REV__tr|A0A553SNT6|A0A553SNT6_NIACIInsulinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25155PE=4SV=1	REV__tr|A0A553SNT6|A0A553SNT6_NIACIInsulinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25155PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	578.3111572265625	2	578.31148	1154.60841	-3.4092	-0.0019716	1.3378	0.00077367	-2.0714	-0.0011979	578.3120607814013	148.81	1.2534	148.59	148.22	149.47	-0.22697					59	24	4	0	0	0	0.762	1	15054	15054		23.523	0	1	94207	+		15456	30451	12577	12597	17091	17091					0.037288168803115695
GYNDKQPIL	9	Unmodified	_GYNDKQPIL_					0	0	0		ENSG00000119912|ENST00000265986|IDE;nc|ENSG00000119912|P14735-2|IDE;ENST00000496903.5_1_10:94214203-94257457:-|nuORF;ENST00000478361.6_1_10:94234505-94239065:-|nuORF	ENSG00000119912|ENST00000265986|IDE	ENSG00000119912|ENST00000265986|IDE	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.2799682617188	2	524.277106	1046.53966	-0.77483	-0.00040622	-2.329	-0.0012211	-3.1039	-0.0016273	524.2758466752936	79.232	1.1454	76.481	76.132	77.277	-2.7514					54	23	4	0	0	0	0.37135	1	6419	6419		54.776	0.053964	1	222400			15457	3400	12578	12598	17092	17092					0.01825152580613576
GYPAGVKSIVV	11	Unmodified	_GYPAGVKSIVV_					0	0	0		TLE6|p.D422A|1|0.16|ENSG00000104953|chr19:2991863-2991863|A/C|missense_variant	TLE6|p.D422A|1|0.16|ENSG00000104953|chr19:2991863-2991863|A/C|missense_variant	TLE6|p.D422A|1|0.16|ENSG00000104953|chr19:2991863-2991863|A/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3170776367188	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.71191	1	14355	14355		25.574	2.0514	1	202430			15458	32961	12579	12599	17093	17093					0.08222889028479585
GYPEVALHF	9	Unmodified	_GYPEVALHF_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	OvCa99_classI_Rep5	1	516.7623291015625	2	516.761092	1031.50763	1.4068	0.00072696	0.16552	8.5535E-05	1.5723	0.00081249	516.7610815004093	111.05	1.2116	111.05	110.71	111.93	0					37	26	2	0	0	0	0.13154	2	12616	12596;12616		88.643	21.686	1	4074300			15459	3523	12580	12600	17094;17095	17095					-0.006862151025416097
GYPLWKVTF	9	Unmodified	_GYPLWKVTF_					0	0	0		ENSG00000198805|ENST00000361505|PNP	ENSG00000198805|ENST00000361505|PNP	ENSG00000198805|ENST00000361505|PNP	MULTI-MSMS	OvCa99_classI_Rep5	1	555.8035278320312	2	555.80276	1109.59097	1.8924	0.0010518	-0.14902	-8.2824E-05	1.7434	0.000969	555.8025942849821	125.27	1.9835	125.27	124.89	126.87	0					116	45	5	0	0	0	0.030815	2	14472	14450;14472		134.81	47.114	1	6954900			15460	8879	12581	12601	17096;17097	17097					0.04055521345298985
GYPQLLVRV	9	Unmodified	_GYPQLLVRV_					0	0	0		ENSG00000172468|ENST00000307393|HSFY1;ENSG00000169953|ENST00000304790|HSFY2	ENSG00000172468|ENST00000307393|HSFY1	ENSG00000172468|ENST00000307393|HSFY1	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.810546875	2	522.813659	1043.61277	-4.1208	-0.0021544	0.024018	1.2557E-05	-4.0968	-0.0021419	522.8135945226888	152.85	1.1432	151.42	151.08	152.23	-1.435					63	27	4	0	0	0	0.64339	1	15182	15182		26.796	1.3459	1	215640			15461	7058	12582	12602	17098	17098					0.09270326093883341
GYQLLRSII	9	Unmodified	_GYQLLRSII_					0	0	0			REV__HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|20|1|sense	REV__HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|20|1|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8170166015625	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.70177	1	11403	11403		17.365	0	1	178650	+		15462	28248	12583	12603	17099	17099					0.09498308748334239
GYRFPRQPG	9	Unmodified	_GYRFPRQPG_					0	0	0		chrX:152755214-152759843|219|10.7|0.04|7.94|+|1|CSAG3,CSAG3|1;chrX:152708640-152713256|214|10.27|0.04|7.98|-|1|CSAG2,CSAG2|1	chrX:152755214-152759843|219|10.7|0.04|7.94|+|1|CSAG3,CSAG3|1	chrX:152755214-152759843|219|10.7|0.04|7.94|+|1|CSAG3,CSAG3|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.7677612304688	2	539.283057	1076.55156	-0.43737	-0.00023587	3.1579	0.001703	2.7205	0.0014671	539.2845586670821	38.683	0.26003	38.683	38.576	38.836	0					6	5	2	0	0	0	0.027462	1	2207	2207		24.203	0	1	46887			15463	567	12584	12604	17100	17100					0.016348141144590045
GYRLFIQKLQ	10	Unmodified	_GYRLFIQKLQ_					0	0	0		ENST00000394662.2_1_1:89887573-89889825:+|nuORF	ENST00000394662.2_1_1:89887573-89889825:+|nuORF	ENST00000394662.2_1_1:89887573-89889825:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3692016601562	2	633.371872	1264.72919	-4.5141	-0.0028591	0.26314	0.00016666	-4.251	-0.0026925	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.72319	1	15446	15446		27.882	4.3595	1	369460			15464	11273	12585	12605	17101	17101					0.10741644593804267
GYRLHLSEA	9	Unmodified	_GYRLHLSEA_					0	0	0		tr|A0A553SRZ9|A0A553SRZ9_NIACIFAD-dependentmonooxygenaseOS=NialliacirculansOX=1397GN=CEQ21_02100PE=4SV=1	tr|A0A553SRZ9|A0A553SRZ9_NIACIFAD-dependentmonooxygenaseOS=NialliacirculansOX=1397GN=CEQ21_02100PE=4SV=1	tr|A0A553SRZ9|A0A553SRZ9_NIACIFAD-dependentmonooxygenaseOS=NialliacirculansOX=1397GN=CEQ21_02100PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	523.302978515625	2	523.274898	1044.53524	-2.1076	-0.0011028	-3.0076	-0.0015738	-5.1152	-0.0026766	523.272900942911	139.7	0.54118	138.64	138.27	138.82	-1.059					22	10	3	0	0	0	0.027462	1	11447	11447		14.865	0	1	14910			15465	34317	12586	12606	17102	17102					0.014756881577113745
GYRSGGGF	8	Unmodified	_GYRSGGGF_					0	0	0		CON__P04264;ENSG00000167768|ENST00000252244|KRT1;KRT1|p.I274Rfs*5|1|0.17|ENSG00000167768|chr12:52678190-52678211|TGCATTTGTCCGCTTGTTGATT/-|frameshift_variant	CON__P04264	CON__P04264	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.5491943359375	2	400.687927	799.361301	1.5523	0.00062197	-0.61808	-0.00024766	0.93419	0.00037432	400.68744482090653	46.513	0.35051	46.513	46.326	46.676	0					13	7	3	0	0	0	0.028476	1	3293	3293		13.775	5.544	1	285360		+	15466	621	12587	12607	17103	17103					-0.04640472547737318
GYRYPSNLQL	10	Unmodified	_GYRYPSNLQL_					0	0	0		TEP1|p.P1636Cfs*29|1|0.07|ENSG00000129566|chr14:20380332-20380333|-/CA|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;ENST00000557627.1_1_14:20869071-20871634:-|nuORF	TEP1|p.P1636Cfs*29|1|0.07|ENSG00000129566|chr14:20380332-20380333|-/CA|frameshift_variant	TEP1|p.P1636Cfs*29|1|0.07|ENSG00000129566|chr14:20380332-20380333|-/CA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	605.8160400390625	2	605.814387	1209.61422	0.98318	0.00059562	1.2129	0.0007348	2.1961	0.0013304	605.8149294907378	152.12	3.19	152.12	151.74	154.93	0					156	68	3	0	0	0	0.32141	2	17820	17820;17890		78.264	15.929	1	906760			15467	3936	12588	12608	17104;17105	17104					0.01779915392012299
GYSAKVVLLLG	11	Unmodified	_GYSAKVVLLLG_					0	0	0			REV__ENSG00000119457|ENST00000374228|SLC46A2	REV__ENSG00000119457|ENST00000374228|SLC46A2	MULTI-MSMS	OvCa9_classI_Rep2	2	560.341064453125	2	560.342249	1118.66995	-4.5115	-0.002528	1.2493	0.00070003	-3.2622	-0.001828	560.3427660344651	160.69	1.3876	160.47	160.23	161.62	-0.22697					59	27	4	0	0	0	0.72485	1	16348	16348		17.468	2.6031	1	170910	+		15468	18444	12589	12609	17106	17106					0.11535748579603933
GYSEHFVE	8	Unmodified	_GYSEHFVE_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;ENSG00000137198|ENST00000259727|GMPR	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MULTI-MSMS	OvCa99_classI_Rep5	1	484.2128601074219	2	484.211432	966.408311	0.51835	0.00025099	-0.66574	-0.00032236	-0.1474	-7.1371E-05	484.21097584026774	63.315	0.59003	63.315	63.1	63.69	0					34	14	3	0	0	0	0.39692	1	5688	5688		88.643	16.765	1	2807500			15469	2124	12590	12610	17107	17107					-0.07623657787269167
GYSEHFVEF	9	Unmodified	_GYSEHFVEF_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;ENST00000559287.5_1_14:24702733-24706289:+|nuORF;ENSG00000137198|ENST00000259727|GMPR	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MULTI-MSMS	OvCa99_classI_Rep5	1	557.74658203125	2	557.745639	1113.47673	3.503	0.0019538	-1.931	-0.001077	1.572	0.0008768	557.7446408025094	97.374	1.4593	97.374	97.093	98.552	0					119	33	5	0	0	0	0.055688	3	10702	10678;10702;10752		115.46	38.685	1	85947000			15470	2124	12591	12611	17108;17109;17110	17109					-0.07547413207407772
GYSHLSLEDF	10	Unmodified	_GYSHLSLEDF_					0	0	0		ENSG00000183742|ENST00000400331|MACC1	ENSG00000183742|ENST00000400331|MACC1	ENSG00000183742|ENST00000400331|MACC1	MULTI-SECPEP	OvCa9_classI_Rep2	2	584.3554077148438	2	584.269478	1166.5244	-2.2525	-0.0013161	-2.4629	-0.001439	-4.7154	-0.0027551	584.2675229933064	144.87	0.8956	144.64	144.44	145.33	-0.22696					39	17	4	0	0	0	0.027021	1	14597	14597		29.15	8.2026	1	55055			15471	8100	12592	12612	17111	17111					-0.052197590072410094
GYSKLIELL	9	Unmodified	_GYSKLIELL_					0	0	0		nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.79833984375	2	518.307875	1034.6012	0.03584	1.8576E-05	4.3549	0.0022572	4.3908	0.0022758	518.8135440111165	45.937	0.17921	45.937	45.8	45.979	0					6	3	2	0	0	0	0.027392	1	3200	3200		44.117	0	1	29970			15472	6710	12593	12613	17112	17112					0.08528084279919312
GYSKLRVIL	9	Unmodified	_GYSKLRVIL_					0	0	0		ENSG00000279804|ENST00000624297|PRAMEF18	ENSG00000279804|ENST00000624297|PRAMEF18	ENSG00000279804|ENST00000624297|PRAMEF18	MULTI-MSMS	OvCa9_classI_Rep3	3	524.8263549804688	2	524.829309	1047.64407	-6.4209	-0.0033699	2.2692	0.001191	-4.1517	-0.0021789	524.8303693371411	156.49	1.5557	155.32	154.95	156.51	-1.1687					100	33	5	0	0	0	0.61208	1	13509	13509		30.504	6.3009	1	1025700			15473	9599	12594	12614	17113	17113					0.12214899128002799
GYSKLRVIL	9	Unmodified	_GYSKLRVIL_					0	0	0		ENSG00000279804|ENST00000624297|PRAMEF18	ENSG00000279804|ENST00000624297|PRAMEF18	ENSG00000279804|ENST00000624297|PRAMEF18	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.82666015625	2	524.829309	1047.64407	-5.767	-0.0030267	1.6173	0.0008488	-4.1497	-0.0021779	524.8300427930473	156.94	1.6972	155.39	155.01	156.7	-1.545					136	47	6	0	0	0	0.6653	1	15585	15585		24.203	0	1	1010500			15474	9599	12594	12614	17114	17114					0.12214899128002799
GYSLKLSKLK	10	Unmodified	_GYSLKLSKLK_					0	0	0		nc|ENSG00000026751|Q9NQ25-6|SLAMF7;ENSG00000026751|ENST00000368043|SLAMF7;nc|ENSG00000026751|Q9NQ25-4|SLAMF7;nc|ENSG00000026751|Q9NQ25-5|SLAMF7;nc|ENSG00000026751|Q9NQ25-3|SLAMF7	nc|ENSG00000026751|Q9NQ25-6|SLAMF7	nc|ENSG00000026751|Q9NQ25-6|SLAMF7	MULTI-MSMS	OvCa9_classI_Rep3	3	568.8531494140625	2	568.855524	1135.69649	-7.0365	-0.0040027	3.4991	0.0019905	-3.5374	-0.0020123	568.857375140279	161.4	1.8223	160.03	159.69	161.51	-1.3692					107	37	5	0	0	0	0.69073	1	14055	14055		31.53	6.0796	1	827460			15475	1052	12595	12615	17115	17115					0.13407437470914374
GYSRLIVLK	9	Unmodified	_GYSRLIVLK_					0	0	0		ENST00000490223.1_1_3:23959215-23959317:+|nuORF	ENST00000490223.1_1_3:23959215-23959317:+|nuORF	ENST00000490223.1_1_3:23959215-23959317:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	524.8271484375	2	524.829309	1047.64407	-4.3888	-0.0023034	0.2202	0.00011557	-4.1686	-0.0021878	524.8292785030237	156.45	1.4045	156.23	155.89	157.3	-0.22696					98	36	4	0	0	0	0.6653	1	15939	15939		24.203	2.5004	1	556080			15476	12693	12596	12616	17116	17116					0.12214899127980061
GYTRRKTRL	9	Unmodified	_GYTRRKTRL_					0	0	0		tr|A0A7D6ZNW0|A0A7D6ZNW0_9CLOTIronchelateuptakeABCtransporterfamilypermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_17920PE=3SV=1	tr|A0A7D6ZNW0|A0A7D6ZNW0_9CLOTIronchelateuptakeABCtransporterfamilypermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_17920PE=3SV=1	tr|A0A7D6ZNW0|A0A7D6ZNW0_9CLOTIronchelateuptakeABCtransporterfamilypermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_17920PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.842529296875	2	575.843813	1149.67307	-2.8608	-0.0016474	1.7444	0.0010045	-1.1164	-0.00064289	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.55588	1	14612	14612		37.159	2.9866	1	356230			15477	35684	12597	12617	17117	17117					0.10422436476960684
GYTSPRRFPI	10	Unmodified	_GYTSPRRFPI_					0	0	0			REV__nc|ENSG00000263001|P78347-2|GTF2I	REV__nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	OvCa99_classI_Rep5	1	597.3291625976562	2	597.324922	1192.63529	2.4989	0.0014926	3.4274	0.0020472	5.9262	0.0035399	597.3268316048669	80.17	0.75207	80.17	79.907	80.659	0					29	17	2	0	0	0	0.65434	1	8228	8228		35.618	6.4687	1	1234900	+		15478	23576	12598	12618	17118	17118					0.04667925491526148
GYTSRWYHL	9	Unmodified	_GYTSRWYHL_					0	0	0		nc|ENSG00000165097|Q8NB78-2|KDM1B;ENSG00000165097|ENST00000650836|KDM1B	nc|ENSG00000165097|Q8NB78-2|KDM1B	nc|ENSG00000165097|Q8NB78-2|KDM1B	MULTI-MSMS	OvCa99_classI_Rep5	1	591.789794921875	2	591.788173	1181.56179	2.2278	0.0013184	0.15877	9.3958E-05	2.3866	0.0014123	591.7878972046007	77.028	0.78075	77.028	76.6	77.381	0					45	18	4	0	0	0	0.56189	1	7742	7742		36.447	7.2767	1	3013000			15479	6518	12599	12619	17119	17119					-0.02172622950956793
GYVDKLKPGI	10	Unmodified	_GYVDKLKPGI_					0	0	0		tr|A0A553SJG9|A0A553SJG9_NIACIPhosphatidylglycerophosphataseAOS=NialliacirculansOX=1397GN=CEQ21_16780PE=4SV=1	tr|A0A553SJG9|A0A553SJG9_NIACIPhosphatidylglycerophosphataseAOS=NialliacirculansOX=1397GN=CEQ21_16780PE=4SV=1	tr|A0A553SJG9|A0A553SJG9_NIACIPhosphatidylglycerophosphataseAOS=NialliacirculansOX=1397GN=CEQ21_16780PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3161010742188	2	545.318774	1088.623	-2.8527	-0.0015556	-0.96726	-0.00052747	-3.8199	-0.0020831	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.66721	1	11846	11846		34.173	3.6689	1	337600			15480	33503	12600	12620	17120	17120					0.08222889028479585
GYVKFWQIYI	10	Unmodified	_GYVKFWQIYI_					0	0	0		ENST00000536072.6_1_16:67909906-67914140:+|nuORF;ENSG00000038358|ENST00000358933|EDC4;EDC4|p.M382Ifs*24|1|0.26|ENSG00000038358|chr16:67878592-67878593|-/TA|frameshift_variant	ENST00000536072.6_1_16:67909906-67914140:+|nuORF	ENST00000536072.6_1_16:67909906-67914140:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	439.5748596191406	3	439.572775	1315.69649	0.18924	8.3186E-05	2.2081	0.00097063	2.3974	0.0010538	439.57367865103447	64.375	1.9917	60.9	60.539	62.531	-3.475					112	40	5	0	0	0	0.52439	1	4576	4576		51.193	13.381	1	797130			15481	1097	12601	12621	17121	17121					0.05127437470969198
GYVKVQVKK	9	Unmodified	_GYVKVQVKK_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-MSMS	OvCa9_classI_Rep3	3	524.8264770507812	2	524.829309	1047.64407	-6.4209	-0.0033699	2.2692	0.001191	-4.1517	-0.0021789	524.8303693371411	156.49	1.5557	155.32	154.95	156.51	-1.1687					100	33	5	0	0	0	0.65476	1	13503	13503		25.45	2.4077	1	1025700			15482	4757	12602	12622	17122	17122					0.12214899127980061
GYVLGGQLLTI	11	Unmodified	_GYVLGGQLLTI_					0	0	0		ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	ENSG00000173930|ENST00000310954|SLCO4C1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3289794921875	2	567.331882	1132.64921	-3.474	-0.0019709	-0.21845	-0.00012393	-3.6925	-0.0020949	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.69455	3	12204	12073;12192;12204		31.53	1.1477	1	458690			15483	7427	12603	12623	17123;17124;17125	17125					0.0881915819995811
GYYGLTLREK	10	Unmodified	_GYYGLTLREK_					0	0	0		tr|A0A553SNS5|A0A553SNS5_NIACILuxRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_24880PE=4SV=1	tr|A0A553SNS5|A0A553SNS5_NIACILuxRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_24880PE=4SV=1	tr|A0A553SNS5|A0A553SNS5_NIACILuxRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_24880PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	600.3251342773438	2	600.324588	1198.63462	1.2087	0.00072562	-1.3087	-0.00078564	-0.099981	-6.0021E-05	600.3236393872913	156.48	2.3289	156.48	156.04	158.37	0					141	46	4	0	0	0	0.66721	1	18361	18361		34.173	1.422	1	3212700			15484	33954	12604	12624	17126	17126					0.043250860517900946
GYYNGKWEFL	10	Unmodified	_GYYNGKWEFL_					0	0	0		ENSG00000144843|ENST00000357003|ADPRH	ENSG00000144843|ENST00000357003|ADPRH	ENSG00000144843|ENST00000357003|ADPRH	MULTI-MSMS	OvCa99_classI_Rep5	1	638.8049926757812	2	638.803488	1275.59242	2.3694	0.0015136	-0.20004	-0.00012779	2.1694	0.0013858	638.8031229999057	115.48	0.97878	115.48	115.25	116.23	0					45	20	5	0	0	0	0.42082	1	13189	13189		65.465	9.0316	1	779910			15485	5185	12605	12625	17127	17127					-0.03434889356572057
HAADLQRR	8	Unmodified	_HAADLQRR_					0	0	0			REV__ENSG00000174799|ENST00000257287|CEP135	REV__ENSG00000174799|ENST00000257287|CEP135	MULTI-MSMS	OvCa99_classI_Rep5	1	483.7646484375	2	483.765032	965.515511	-0.41278	-0.00019969	-0.12933	-6.2567E-05	-0.54211	-0.00026225	483.76496559732675	24.213	0.90203	24.213	24.036	24.938	0					42	17	4	0	0	0	0.75991	1	462	462		21.702	0	1	1773100	+		15486	21853	12606	12626	17128	17128					0.03137356937622826
HAAGVLLHV	9	Unmodified	_HAAGVLLHV_					0	0	0		ENSG00000174165|ENST00000310442|ZDHHC24	ENSG00000174165|ENST00000310442|ZDHHC24	ENSG00000174165|ENST00000310442|ZDHHC24	MULTI-MSMS	OvCa99_classI_Rep5	1	458.7733154296875	2	458.771794	915.529036	0.54314	0.00024918	-0.7559	-0.00034678	-0.21276	-9.7608E-05	458.7712954546875	66.763	0.88005	66.763	66.491	67.371	0					49	21	3	0	0	0	0.14417	2	6199	6199;6229		85.909	43.435	1	5682900			15487	7444	12607	12627	17129;17130	17129					0.06789214716843617
HAAKVILQV	9	Unmodified	_HAAKVILQV_					0	0	0		RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.T5031Rfs*29|1|0.06|ENSG00000173821|chr17:80389261-80389262|-/TCGG|frameshift_variant;RNF213|p.G5057Vfs*8|1|0.18|ENSG00000173821|chr17:80389340-80389340|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.N2986Tfs*32|1|0.9|ENSG00000173821|chr17:80347289-80347289|G/-|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	489.8097229003906	2	489.808377	977.6022	0.19085	9.348E-05	-1.1225	-0.00054981	-0.93164	-0.00045633	489.8078535098852	63.358	2.9277	63.358	62.976	65.904	0					190	72	4	0	0	0	0.13482	4	5704	5675;5704;5734;5816		87.754	39.839	1	51424000			15488	7416;32788	12608	12628	17131;17132;17133;17134	17132					0.11250343439485277
HAAKVILQV	9	Unmodified	_HAAKVILQV_					0	0	0		RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.T5031Rfs*29|1|0.06|ENSG00000173821|chr17:80389261-80389262|-/TCGG|frameshift_variant;RNF213|p.G5057Vfs*8|1|0.18|ENSG00000173821|chr17:80389340-80389340|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.N2986Tfs*32|1|0.9|ENSG00000173821|chr17:80347289-80347289|G/-|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	489.8080139160156	2	489.808377	977.6022	-0.71815	-0.00035175	0.032485	1.5912E-05	-0.68566	-0.00033584	489.80821757864487	67.972	2.6273	65.311	64.644	67.271	-2.661					105	52	3	0	0	0	0.55588	1	5341	5341		37.159	0.13063	1	334510			15489	7416;32788	12608	12628	17135	17135					0.11250343439485277
HAAKVILQV	9	Unmodified	_HAAKVILQV_					0	0	0		RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.T5031Rfs*29|1|0.06|ENSG00000173821|chr17:80389261-80389262|-/TCGG|frameshift_variant;RNF213|p.G5057Vfs*8|1|0.18|ENSG00000173821|chr17:80389340-80389340|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.N2986Tfs*32|1|0.9|ENSG00000173821|chr17:80347289-80347289|G/-|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.8099670410156	2	489.808377	977.6022	0.0074973	3.6722E-06	-0.85032	-0.00041649	-0.84282	-0.00041282	489.8077565890307	68.986	2.156	65.496	64.72	66.876	-3.4902					77	43	3	0	0	0	0.55588	1	5145	5145		37.159	9.2769	1	320770			15490	7416;32788	12608	12628	17136	17136					0.11250343439485277
HAALLRTF	8	Unmodified	_HAALLRTF_					0	0	0			REV__nc|ENSG00000292373|Q01113-3|IL9R	REV__nc|ENSG00000292373|Q01113-3|IL9R	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.23272705078125	2	464.771794	927.529036	-0.96715	-0.0004495	-3.5732	-0.0016607	-4.5404	-0.0021102	464.76997193091137	34.798	0.37136	34.798	34.586	34.957	0					15	7	3	0	0	0	0.028476	1	1685	1685		12.959	0	1	70899	+		15491	29220	12609	12629	17137	17137					0.062372147168503034
HAALQFVQLL	10	Unmodified	_HAALQFVQLL_					0	0	0			REV__ENSG00000103148|ENST00000611875|NPRL3	REV__ENSG00000103148|ENST00000611875|NPRL3	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.2547607421875	2	570.332216	1138.64988	2.3099	0.0013174	4.2759	0.0024387	6.5858	0.0037561	570.3340336714868	80.181	0.84187	80.181	79.944	80.786	0					28	19	3	0	0	0	0.026582	1	8246	8246		60.972	23.813	1	237870	+		15492	17597	12610	12630	17138	17138					0.08609997639655376
HAATIIWLPT	10	Unmodified	_HAATIIWLPT_					0	0	0			REV__ENST00000476848.5_1_21:43803140-43803371:-|nuORF	REV__ENST00000476848.5_1_21:43803140-43803371:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	561.2771606445312	2	561.818941	1121.62333	1.0399	0.00058425	-3.6855	-0.0020706	-2.6456	-0.0014863	562.3192207709417	103.08	0.47026	100.88	100.62	101.09	-2.1994					11	8	2	0	0	0	0.026734	1	9268	9268		31.53	0	1	11103	+		15493	16031	12611	12631	17139	17139					0.06738308748322197
HAAYLVDSL	9	Unmodified	_HAAYLVDSL_					0	0	0		nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1;nc|ENSG00000292277|Q9UJ98-2|STAG3;nc|ENSG00000292277|Q9UJ98-3|STAG3;nc|ENSG00000292277|Q9UJ98|STAG3;ENSG00000066923|ENST00000615138|STAG3	nc|ENSG00000118007|Q8WVM7-2|STAG1	nc|ENSG00000118007|Q8WVM7-2|STAG1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.76287841796875	2	494.758549	987.502546	-0.97214	-0.00048097	0.10213	5.0531E-05	-0.87	-0.00043044	494.7584434393654	45.305	0.624	42.267	42.023	42.647	-3.0385					18	11	2	0	0	0	0.027462	1	2297	2297		42.474	14.592	1	17845			15494	3285	12612	12632	17140	17140					0.008294810348388637
HACCFCTET	9	Unmodified	_HACCFCTET_					0	0	0			REV__ENSG00000163637|ENST00000638394|PRICKLE2	REV__ENSG00000163637|ENST00000638394|PRICKLE2	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.271240234375	2	507.67753	1013.34051	-0.17066	-8.664E-05	-3.2057	-0.0016275	-3.3764	-0.0017141	507.67573326965316	52.369	1.5653	52.369	52.127	53.692	0					67	35	4	0	0	0	0.027462	1	4223	4223		19.36	0	1	2696900	+		15495	20866	12613	12633	17141	17141					-0.1656289030561311
HADKVFDVNK	10	Unmodified	_HADKVFDVNK_					0	0	0			REV__ENST00000568936.1_1_15:43482505-43485079:+|nuORF	REV__ENST00000568936.1_1_15:43482505-43485079:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	586.802734375	2	586.806562	1171.59857	-5.211	-0.0030579	-0.81092	-0.00047585	-6.022	-0.0035337	586.8058911238584	159.27	2.2635	159.04	158.53	160.79	-0.22696					99	45	3	0	0	0	0.79213	1	16262	16262		19.997	1.6724	1	107570	+		15496	21240	12614	12634	17142	17142					0.019636288749325104
HAEDQGTLRF	10	Unmodified	_HAEDQGTLRF_					0	0	0			REV__sp|P16734|CEP1_HCMVACytoplasmicenvelopmentprotein1OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL103PE=3SV=1	REV__sp|P16734|CEP1_HCMVACytoplasmicenvelopmentprotein1OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL103PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	587.8359985351562	2	587.285994	1172.55744	-1.2947	-0.00076033	1.5797	0.00092775	0.28506	0.00016741	587.2866649340339	54.473	1.2803	51.225	50.927	52.207	-3.2474					64	24	5	0	0	0	0.027021	1	3346	3346		15.642	3.435	1	236550	+		15497	29384	12615	12635	17143	17143					-0.021941321645272183
HAEDQGTLRF	10	Unmodified	_HAEDQGTLRF_					0	0	0			REV__sp|P16734|CEP1_HCMVACytoplasmicenvelopmentprotein1OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL103PE=3SV=1	REV__sp|P16734|CEP1_HCMVACytoplasmicenvelopmentprotein1OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL103PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	587.285994	1172.55744	-1.3735	-0.00080663	1.3214	0.00077603	-0.052105	-3.0601E-05	587.286679268857	54.213	0.69678	51.399	51.175	51.872	-2.8139	0.08702	-7.8718E-05	NaN	15.642	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50407	+		15498	29384	12615	12635							-0.021941321645272183
HAFQNKAIIIL	11	Unmodified	_HAFQNKAIIIL_					0	0	0			REV__tr|A0A7D6VNL2|A0A7D6VNL2_9CLOTPseudouridinesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18360PE=3SV=1	REV__tr|A0A7D6VNL2|A0A7D6VNL2_9CLOTPseudouridinesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18360PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	634.3787231445312	2	634.379697	1266.74484	-5.7659	-0.0036578	3.1969	0.0020281	-2.569	-0.0016297	634.3814892688545	163.56	1.4089	163.33	162.75	164.16	-0.22696					114	47	3	0	0	0	0.71929	1	16721	16721		23.042	3.0457	1	320930	+		15499	31190	12616	12636	17144	17144					0.12213931110863996
HAGPAPRQ	8	Unmodified	_HAGPAPRQ_					0	0	0		ENST00000455332.6_1_11:119230009-119230894:-|nuORF	ENST00000455332.6_1_11:119230009-119230894:-|nuORF	ENST00000455332.6_1_11:119230009-119230894:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	417.2225646972656	2	417.222469	832.430384	-0.16608	-6.9294E-05	0.067313	2.8084E-05	-0.098772	-4.121E-05	417.222334431684	39.816	0.74695	39.816	39.547	40.294	0					37	16	3	0	0	0	0.64377	1	2384	2384		54.765	12.29	1	1093000			15500	12096	12617	12637	17145	17145					0.007466114717999517
HAHPLPQAFTD	11	Unmodified	_HAHPLPQAFTD_					0	0	0			REV__ENST00000585416.1_1_19:55738551-55739001:-|nuORF	REV__ENST00000585416.1_1_19:55738551-55739001:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	617.3045043945312	2	617.304187	1232.59382	2.8127	0.0017363	-3.9605	-0.0024448	-1.1478	-0.00070854	617.3016990147671	135.52	1.0365	133.97	133.61	134.65	-1.5437					41	20	3	0	0	0	0.69808	1	13143	13143		30.318	4.8675	1	75942	+		15501	22157	12618	12638	17146	17146					-0.013172552678270222
HAHPLPQAFTD	11	Unmodified	_HAHPLPQAFTD_					0	0	0			REV__ENST00000585416.1_1_19:55738551-55739001:-|nuORF	REV__ENST00000585416.1_1_19:55738551-55739001:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	617.304187	1232.59382	-0.58369	-0.00036031	-0.32792	-0.00020243	-0.91161	-0.00056274	617.303878817326	134.59	0.83215	134.37	134	134.83	-0.22696	0.21023	0.0016224	NaN	30.318	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44288	+		15502	22157	12618	12638							-0.013172552678270222
HAHPLPQAFTD	11	Unmodified	_HAHPLPQAFTD_					0	0	0			REV__ENST00000585416.1_1_19:55738551-55739001:-|nuORF	REV__ENST00000585416.1_1_19:55738551-55739001:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	617.304187	1232.59382	0.33988	0.00020981	-1.4209	-0.0008771	-1.081	-0.00066729	617.3033385674029	135.24	0.83647	134.13	133.77	134.6	-1.1076	-0.02627	0.00027308	NaN	30.318	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39249	+		15503	22157	12618	12638							-0.013172552678270222
HAHPLPQAFTD	11	Unmodified	_HAHPLPQAFTD_					0	0	0			REV__ENST00000585416.1_1_19:55738551-55739001:-|nuORF	REV__ENST00000585416.1_1_19:55738551-55739001:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	617.304187	1232.59382	2.8127	0.0017363	-3.9605	-0.0024448	-1.1478	-0.00070854	617.3016990147671	135.52	1.0365	133.97	133.61	134.65	-1.5437	-0.18396	-0.0028624	NaN	30.318	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75942	+		15504	22157	12618	12638							-0.013172552678270222
HAHPWSCLH	9	Unmodified	_HAHPWSCLH_					0	0	0		ENST00000572221.5_1_16:67906988-67909700:+|nuORF	ENST00000572221.5_1_16:67906988-67909700:+|nuORF	ENST00000572221.5_1_16:67906988-67909700:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.2803344726562	2	544.24816	1086.48177	-0.5651	-0.00030755	0.50527	0.00027499	-0.059821	-3.2558E-05	544.2487964710654	36.071	0.18026	36.071	35.939	36.119	0					7	3	3	0	0	0	0.027462	1	1877	1877		25.45	10.786	1	26208			15505	13910	12619	12639	17147	17147					-0.05801387825817983
HAIIREVI	8	Unmodified	_HAIIREVI_					0	0	0			REV__CHD1|p.D670Vfs*3|1|0.07|ENSG00000153922|chr5:98892696-98892697|-/A|frameshift_variant	REV__CHD1|p.D670Vfs*3|1|0.07|ENSG00000153922|chr5:98892696-98892697|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.79327392578125	2	475.792727	949.5709	-0.68713	-0.00032693	0.017168	8.1684E-06	-0.66996	-0.00031876	475.7926046329971	72.087	1.2155	68.631	68.364	69.579	-3.4563					56	24	3	0	0	0	0.64026	1	5519	5519		55.504	2.1528	1	635130	+		15506	15786	12620	12640	17148	17148					0.09409770405375184
HAIMRSPQM	9	Oxidation (M)	_HAIM(Oxidation (M))RSPQM_		HAIM(0.999)RSPQM(0.001)		HAIM(30)RSPQM(-30)	0	0	1		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OvCa99_classI_Rep5	1	543.7619018554688	2	543.762786	1085.51102	-0.80335	-0.00043683	0.51286	0.00027887	-0.29049	-0.00015796	543.7629433255116	36.624	3.6234	36.624	35.753	39.376	0					126	79	2	0	0	0	0.2422	3	1946	1946;1966;2003		69.628	20.186	2	659480			15507	6867	12621	12641	17149;17150;17151	17149		212			-0.02831611591818728
HAIMRSPQM	9	Unmodified	_HAIMRSPQM_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OvCa99_classI_Rep5	1	535.765625	2	535.765329	1069.5161	-0.44079	-0.00023616	-0.045746	-2.4509E-05	-0.48653	-0.00026067	535.7652451124012	49.187	2.4892	49.187	48.718	51.207	0					125	56	4	0	0	0	0.021573	4	3646	3623;3646;3676;3701		145.16	58.221	1	14522000			15508	6867	12621	12642	17152;17153;17154;17155	17153					-0.01587307729209897
HAIMRSPQM	9	Unmodified	_HAIMRSPQM_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	535.765329	1069.5161	-2.0822	-0.0011156	1.4327	0.00076762	-0.64944	-0.00034795	535.7660830060482	52.202	0.24787	49.389	49.196	49.444	-2.8129	0.10125	0.0015512	NaN	145.16	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5362.3			15509	6867	12621	12642							-0.01587307729209897
HAIVRLSTRNG	11	Unmodified	_HAIVRLSTRNG_					0	0	0			REV__ENSG00000117069|ENST00000477717|ST6GALNAC5	REV__ENSG00000117069|ENST00000477717|ST6GALNAC5	MULTI-SECPEP	OvCa99_classI_Rep5	1	409.5382080078125	3	408.570427	1222.68945	0.94879	0.00038765	-4.1596	-0.0016995	-3.2108	-0.0013118	408.5686640736969	51.016	0.64183	51.016	50.819	51.461	0					18	14	2	0	0	0	0.026145	1	3886	3886		29.551	7.7703	1	151450	+		15510	18334	12622	12643	17156	17156					0.08701517643089574
HAKIIAAIT	9	Unmodified	_HAKIIAAIT_					0	0	0		nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	MULTI-SECPEP	OvCa99_classI_Rep5	1	468.79937744140625	2	469.295102	936.575651	1.6316	0.00076568	-0.84733	-0.00039765	0.78423	0.00036803	469.2942433077779	119.76	0.26306	119.76	119.65	119.92	0					8	5	2	0	0	0	0.027462	1	13744	13744		35.618	5.1146	1	64909			15511	5228	12623	12644	17157	17157					0.10482654548115988
HAKLIHHGL	9	Unmodified	_HAKLIHHGL_					0	0	0			REV__TANC1|p.T1589Ifs*85|1|0.16|ENSG00000115183|chr2:159230192-159230192|C/-|frameshift_variant;REV__nc|ENSG00000170921|Q9HCD6-3|TANC2	REV__TANC1|p.T1589Ifs*85|1|0.16|ENSG00000115183|chr2:159230192-159230192|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.7493896484375	2	513.303793	1024.59303	0.71441	0.00036671	-0.51612	-0.00026493	0.19829	0.00010178	513.3035421708092	158.7	1.4877	158.7	158.32	159.81	0					43	30	2	0	0	0	0.027462	1	18718	18718		33.516	10.473	1	433740	+		15512	18224;21577	12624	12645	17158	17158					0.08171994873782751
HAKLRAAELG	10	Unmodified	_HAKLRAAELG_					0	0	0			REV__ENSG00000145692|ENST00000274353|BHMT	REV__ENSG00000145692|ENST00000274353|BHMT	MULTI-MSMS	OvCa9_classI_Rep2	2	533.3117065429688	2	533.311815	1064.60908	-1.0201	-0.00054405	0.69126	0.00036866	-0.32887	-0.00017539	533.3120608238993	40.28	1.7779	37.571	37.202	38.98	-2.7097					89	35	4	0	0	0	0.66721	1	2051	2051		34.173	2.6427	1	555430	+		15513	19975	12625	12646	17159	17159					0.07935656320023554
HALIGGIVAV	10	Unmodified	_HALIGGIVAV_					0	0	0		ENSG00000175161|ENST00000383699|CADM2;nc|ENSG00000175161|Q8N3J6|CADM2;nc|ENSG00000175161|Q8N3J6-3|CADM2;nc|ENSG00000175161|Q8N3J6-4|CADM2;nc|ENSG00000175161|Q8N3J6-5|CADM2	ENSG00000175161|ENST00000383699|CADM2	ENSG00000175161|ENST00000383699|CADM2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.79327392578125	2	475.295102	948.575651	-0.49372	-0.00023466	0.38271	0.0001819	-0.111	-5.276E-05	475.29511868868434	71.619	1.5133	68.162	67.776	69.289	-3.4563					48	30	3	0	0	0	0.026578	1	5519	5519		26.796	13.021	1	177030			15514	7520	12626	12647	17160	17160					0.09930654548134044
HALIGGIVAV	10	Unmodified	_HALIGGIVAV_					0	0	0		ENSG00000175161|ENST00000383699|CADM2;nc|ENSG00000175161|Q8N3J6|CADM2;nc|ENSG00000175161|Q8N3J6-3|CADM2;nc|ENSG00000175161|Q8N3J6-4|CADM2;nc|ENSG00000175161|Q8N3J6-5|CADM2	ENSG00000175161|ENST00000383699|CADM2	ENSG00000175161|ENST00000383699|CADM2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	475.295102	948.575651	0.040047	1.9034E-05	-0.20274	-9.6363E-05	-0.1627	-7.7329E-05	475.2948105746573	70.441	1.7014	67.871	67.512	69.214	-2.5707	-0.14589	-0.00030745	NaN	26.796	51	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138850			15515	7520	12626	12647							0.09930654548134044
HALIRLDL	8	Unmodified	_HALIRLDL_					0	0	0			REV__Tigger4b_dup2156|chr16:29442250-29442588:-|1.197703121402909|0.4872832370944458|1.3|428.0|21|3|anti-sense	REV__Tigger4b_dup2156|chr16:29442250-29442588:-|1.197703121402909|0.4872832370944458|1.3|428.0|21|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.79364013671875	2	475.792727	949.5709	-0.68713	-0.00032693	0.017168	8.1684E-06	-0.66996	-0.00031876	475.7926046329971	72.087	1.2155	68.631	68.364	69.579	-3.4563					56	24	3	0	0	0	0.58851	1	5530	5530		66.429	0	1	635130	+		15516	29509	12627	12648	17161	17161					0.09409770405375184
HALIRLDL	8	Unmodified	_HALIRLDL_					0	0	0			REV__Tigger4b_dup2156|chr16:29442250-29442588:-|1.197703121402909|0.4872832370944458|1.3|428.0|21|3|anti-sense	REV__Tigger4b_dup2156|chr16:29442250-29442588:-|1.197703121402909|0.4872832370944458|1.3|428.0|21|3|anti-sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	475.792727	949.5709	0.37522	0.00017852	-0.77565	-0.00036905	-0.40043	-0.00019052	475.79215238648203	71.075	1.2536	68.568	68.127	69.381	-2.5071	-0.031751	-0.00039502	NaN	66.429	53	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165720	+		15517	29509	12627	12648							0.09409770405375184
HALIRLDL	8	Unmodified	_HALIRLDL_					0	0	0			REV__Tigger4b_dup2156|chr16:29442250-29442588:-|1.197703121402909|0.4872832370944458|1.3|428.0|21|3|anti-sense	REV__Tigger4b_dup2156|chr16:29442250-29442588:-|1.197703121402909|0.4872832370944458|1.3|428.0|21|3|anti-sense	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	475.792727	949.5709	-0.68713	-0.00032693	0.017168	8.1684E-06	-0.66996	-0.00031876	475.7926046329971	72.087	1.2155	68.631	68.364	69.579	-3.4563	0.031751	0.00035941	NaN	66.429	56	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	635130	+		15518	29509	12627	12648							0.09409770405375184
HALLDTVTV	9	Unmodified	_HALLDTVTV_					0	0	0			REV__nc|ENSG00000044524|P29320-2|EPHA3	REV__nc|ENSG00000044524|P29320-2|EPHA3	MULTI-MSMS	OvCa9_classI_Rep3	3	484.7749328613281	2	484.7742	967.533846	-1.5084	-0.00073122	-0.15829	-7.6735E-05	-1.6667	-0.00080796	484.77403906510136	92.046	3.4526	90.022	89.433	92.885	-2.0241					159	69	4	0	0	0	0.19716	1	5894	5894		76.847	0	1	6192900	+		15519	16649	12628	12649	17162	17162					0.04878054068956317
HALLRTALQ	9	Unmodified	_HALLRTALQ_					0	0	0			REV__ENSG00000143126|ENST00000271332|CELSR2	REV__ENSG00000143126|ENST00000271332|CELSR2	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.8083801269531	2	511.808908	1021.60326	0.46078	0.00023583	-1.0122	-0.00051806	-0.55142	-0.00028222	511.80831442868	37.858	1.6886	34.966	34.541	36.23	-2.8925					89	33	4	0	0	0	0.33652	1	1430	1430		58.782	7.4465	1	929280	+		15520	19817	12629	12650	17163	17163					0.09332557808352249
HALPDPKL	8	Unmodified	_HALPDPKL_					0	0	0			REV__nc|ENSG00000148737|Q9NQB0-17|TCF7L2	REV__nc|ENSG00000148737|Q9NQB0-17|TCF7L2	MULTI-SECPEP	OvCa99_classI_Rep5	1	446.5555419921875	2	445.758352	889.502152	-0.02571	-1.146E-05	0.18497	8.2454E-05	0.15926	7.0993E-05	445.7579134576498	50.077	0.74041	50.077	49.899	50.64	0					20	16	2	0	0	0	0.028476	1	3769	3769		39.021	9.8719	1	99312	+		15521	20124	12630	12651	17164	17164					0.052981061056470935
HALPIPVI	8	Unmodified	_HALPIPVI_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	430.274658203125	2	430.273638	858.532724	0.20112	8.6536E-05	-0.046823	-2.0147E-05	0.1543	6.639E-05	430.27350674453226	109.1	1.7128	107.37	106.97	108.68	-1.7256					93	32	4	0	0	0	0.69862	1	9995	9995		43.626	10.133	1	507820			15522	4501	12631	12652	17165	17165					0.09779884490706081
HALVIQVPCPK	11	Unmodified	_HALVIQVPCPK_					0	0	0			REV__nc|ENSG00000119787|Q8NHH9-5|ATL2	REV__nc|ENSG00000119787|Q8NHH9-5|ATL2	MULTI-MSMS	OvCa99_classI_Rep5	1	402.2350769042969	3	402.233876	1203.6798	1.4495	0.00058303	2.4704	0.00099367	3.9198	0.0015767	402.23459539794237	32.294	0.74228	32.294	32.006	32.748	0					62	14	7	0	0	0	0.69015	1	1390	1390		33.039	0.22698	1	1645000	+		15523	18469	12632	12653	17166	17166					0.08610613313317117
HAMGTGPPIV	10	Unmodified	_HAMGTGPPIV_					0	0	0			REV__ENSG00000136381|ENST00000258886|IREB2	REV__ENSG00000136381|ENST00000258886|IREB2	MULTI-MSMS	OvCa99_classI_Rep5	1	490.25396728515625	2	490.25512	978.495686	-0.060381	-2.9602E-05	-4.2247	-0.0020712	-4.2851	-0.0021008	490.2529229802756	64.829	0.64264	64.829	64.588	65.231	0					27	15	2	0	0	0	0.56767	1	5918	5918		45.952	8.7928	1	1539200	+		15524	19383	12633	12654	17167	17167					0.005578448826327076
HAMGTGPPIV	10	Unmodified	_HAMGTGPPIV_					0	0	0			REV__ENSG00000136381|ENST00000258886|IREB2	REV__ENSG00000136381|ENST00000258886|IREB2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	490.25512	978.495686	0.33408	0.00016379	-5.7441	-0.0028161	-5.41	-0.0026523	490.25211857681035	67.099	1.2404	64.438	63.751	64.991	-2.661	-0.11907	-0.00058624	NaN	45.952	46	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64075	+		15525	19383	12633	12654							0.005578448826327076
HAMGTGPPIV	10	Unmodified	_HAMGTGPPIV_					0	0	0			REV__ENSG00000136381|ENST00000258886|IREB2	REV__ENSG00000136381|ENST00000258886|IREB2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	490.25512	978.495686	1.4507	0.00071119	-6.3121	-0.0030946	-4.8615	-0.0023834	490.2518094716991	67.896	1.0765	64.405	63.938	65.014	-3.4902	-0.15199	-0.0011432	NaN	45.952	54	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	337490	+		15526	19383	12633	12654							0.005578448826327076
HANAARLLI	9	Unmodified	_HANAARLLI_					0	0	0		SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant;nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant	SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	489.7960205078125	2	489.795801	977.577048	-0.13306	-6.5173E-05	0.0095593	4.6821E-06	-0.1235	-6.0491E-05	489.7956877982033	64.975	1.2794	64.975	64.588	65.867	0					67	31	4	0	0	0	0.14739	1	5933	5933		85.359	19.556	1	4393000			15527	1794	12634	12655	17168	17168					0.08736288636896461
HAQGPIFSPP	10	Unmodified	_HAQGPIFSPP_					0	0	0			REV__ENST00000415440.3_1_19:19790061-19790190:+|nuORF	REV__ENST00000415440.3_1_19:19790061-19790190:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.8555908203125	2	525.771991	1049.52943	0.11124	5.8486E-05	3.8214	0.0020092	3.9326	0.0020677	525.7739527660503	128.86	0.59279	127.41	127.15	127.74	-1.4565					19	11	2	0	0	0	0.026956	1	12305	12305		26.693	9.3279	1	35409	+		15528	25529	12635	12656	17169	17169					0.006645896460440781
HAQGPIFSPP	10	Unmodified	_HAQGPIFSPP_					0	0	0			REV__ENST00000415440.3_1_19:19790061-19790190:+|nuORF	REV__ENST00000415440.3_1_19:19790061-19790190:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	525.771991	1049.52943	0.96988	0.00050994	2.3986	0.0012611	3.3685	0.0017711	525.7731486682977	127.86	0.59067	127.63	127.39	127.98	-0.22697	0.11103	-0.00072377	NaN	26.693	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42023	+		15529	25529	12635	12656							0.006645896460440781
HAQLAKATRA	10	Unmodified	_HAQLAKATRA_					0	0	0			REV__nc|ENSG00000187778|Q96EZ8-3|MCRS1	REV__nc|ENSG00000187778|Q96EZ8-3|MCRS1	MSMS	OvCa9_classI_Rep4_	4	533.8095092773438	2	533.809439	1065.60433	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.204	1	93.778	93.278	94.278	-2.4256								0	0	0	0.12201	1	8484	8484		60.118	6.7668	1		+		15530	22663	12636	12657	17170	17170					0.07414772177276063
HAQLSRLV	8	Unmodified	_HAQLSRLV_					0	0	0			REV__nc|ENSG00000171634|Q12830-4|BPTF	REV__nc|ENSG00000171634|Q12830-4|BPTF	MULTI-MSMS	OvCa99_classI_Rep5	1	462.27471923828125	2	462.274701	922.534849	0.094711	4.3783E-05	-0.099402	-4.5951E-05	-0.0046905	-2.1683E-06	462.2745061710751	32.627	0.48728	32.627	32.453	32.941	0					19	9	3	0	0	0	0.75241	1	1442	1442		25.45	3.4903	1	244690	+		15531	21633	12637	12658	17171	17171					0.070483132285176
HAQLSRLV	8	Unmodified	_HAQLSRLV_					0	0	0			REV__nc|ENSG00000171634|Q12830-4|BPTF	REV__nc|ENSG00000171634|Q12830-4|BPTF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	462.274701	922.534849	0.094711	4.3783E-05	-0.099402	-4.5951E-05	-0.0046905	-2.1683E-06	462.2745061710751	32.627	0.48728	32.627	32.453	32.941	0	0	0	NaN	25.45	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244690	+		15532	21633	12637	12658							0.070483132285176
HARKLLLSL	9	Unmodified	_HARKLLLSL_					0	0	0			REV__ENST00000439581.1_1_X:108872738-108877913:-|nuORF	REV__ENST00000439581.1_1_X:108872738-108877913:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.275146484375	2	525.842751	1049.67095	-1.0744	-0.00056498	1.1089	0.00058311	0.034482	1.8132E-05	525.842974027865	94.921	0.95203	93.025	92.712	93.664	-1.8956					40	18	3	0	0	0	0.027462	1	6120	6120		21.96	4.5949	1	66606	+		15533	25822	12638	12659	17172	17172					0.14810007739197317
HASESRVAL	9	Unmodified	_HASESRVAL_					0	0	0		ENST00000496906.1_1_9:35749376-35750743:+|nuORF;ENSG00000107185|ENST00000378078|RGP1	ENST00000496906.1_1_9:35749376-35750743:+|nuORF	ENST00000496906.1_1_9:35749376-35750743:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	485.2607421875	2	485.259248	968.503943	-0.52568	-0.00025509	0.34947	0.00016958	-0.1762	-8.5504E-05	485.2593262451006	38.463	0.58915	38.463	38.161	38.75	0					27	12	3	0	0	0	0.28934	1	2180	2180		64.207	0.901	1	658220			15534	2593	12639	12660	17173	17173					0.018431151236200094
HASSGIEF	8	Unmodified	_HASSGIEF_					0	0	0			REV__CUBN|p.N2467Tfs*26|1|0.51|ENSG00000107611|chr10:16913949-16913949|A/-|frameshift_variant	REV__CUBN|p.N2467Tfs*26|1|0.51|ENSG00000107611|chr10:16913949-16913949|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	424.19915771484375	2	424.200867	846.387182	1.0576	0.00044862	-2.4311	-0.0010313	-1.3736	-0.00058266	424.19976643391453	129.13	1.2356	127.67	127.35	128.58	-1.4565					48	24	3	0	0	0	0.74971	2	12344	12344;12354		26.796	2.5934	1	120730	+		15535	16257	12640	12661	17174;17175	17174					-0.04215623096138188
HASVEVIR	8	Unmodified	_HASVEVIR_					0	0	0		tr|A0A553SHI2|A0A553SHI2_NIACIRibonucleaseM5OS=NialliacirculansOX=1397GN=rnmVPE=3SV=1	tr|A0A553SHI2|A0A553SHI2_NIACIRibonucleaseM5OS=NialliacirculansOX=1397GN=rnmVPE=3SV=1	tr|A0A553SHI2|A0A553SHI2_NIACIRibonucleaseM5OS=NialliacirculansOX=1397GN=rnmVPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	455.7589416503906	2	455.758884	909.503215	-0.0063747	-2.9053E-06	-0.40682	-0.00018541	-0.41319	-0.00018832	455.75868139331794	51.389	1.4388	48.576	48.154	49.592	-2.8129					81	28	4	0	0	0	0.7043	1	3396	3396		42.474	3.6683	1	868170			15536	33275	12641	12662	17176	17176					0.04484320474557535
HAVAPLQEIK	10	Unmodified	_HAVAPLQEIK_					0	0	0		ENSG00000167595|ENST00000646935|PROSER3;nc|ENSG00000167595|Q2NL68-3|PROSER3;nc|ENSG00000167595|Q2NL68-4|PROSER3;nc|ENSG00000167595|Q2NL68-2|PROSER3;nc|ENSG00000167595|Q2NL68|PROSER3	ENSG00000167595|ENST00000646935|PROSER3	ENSG00000167595|ENST00000646935|PROSER3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.3067626953125	2	553.321848	1104.62914	-0.055467	-3.0691E-05	-2.8437	-0.0015735	-2.8991	-0.0016042	553.3199382458334	21.104	1.1278	19.766	19.548	20.675	-1.3386					33	22	2	0	0	0	0.026915	1	212	212		27.882	0	1	30221			15537	6810	12642	12663	17177	17177					0.08101407259982807
HAVFSLLSLQE	11	Unmodified	_HAVFSLLSLQE_					0	0	0		ENSG00000171488|ENST00000370454|LRRC8C	ENSG00000171488|ENST00000370454|LRRC8C	ENSG00000171488|ENST00000370454|LRRC8C	MULTI-MSMS	OvCa9_classI_Rep4_	4	622.3363647460938	2	622.337695	1242.66084	-4.3656	-0.0027169	2.4684	0.0015362	-1.8972	-0.0011807	622.3390875012716	154.54	0.85817	153.09	152.8	153.66	-1.4516					54	19	3	0	0	0	0.72491	1	15344	15344		16.717	2.5803	1	149970			15538	7202	12643	12664	17178	17178					0.049213552233140945
HAVGPSTAM	9	Unmodified	_HAVGPSTAM_					0	0	0		nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-10|TCF4;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-2|TCF4;ENST00000562680.5_1_18:52899738-53018213:-|nuORF;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-11|TCF4	nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-7|TCF4	nc|ENSG00000196628|P15884-7|TCF4	MULTI-MSMS	OvCa99_classI_Rep5	1	435.710693359375	2	435.710545	869.406537	0.5727	0.00024953	-0.51072	-0.00022253	0.061978	2.7005E-05	435.7102275129817	47.144	1.5239	47.144	46.809	48.332	0					74	34	4	0	0	0	0.13154	2	3361	3361;3382		88.643	28.349	1	3424400			15539	15243;15244	12644	12665	17179;17180	17179					-0.03338990076883874
HAVGPSTSL	9	Unmodified	_HAVGPSTSL_					0	0	0		nc|ENSG00000140262|Q99081-4|TCF12;nc|ENSG00000140262|Q99081-2|TCF12;nc|ENSG00000140262|Q99081|TCF12;ENSG00000140262|ENST00000333725|TCF12	nc|ENSG00000140262|Q99081-4|TCF12	nc|ENSG00000140262|Q99081-4|TCF12	MULTI-MSMS	OvCa99_classI_Rep5	1	434.7308349609375	2	434.729792	867.445031	0.23875	0.00010379	-0.13178	-5.7291E-05	0.10697	4.6501E-05	434.729626579042	54.111	1.9884	54.111	53.815	55.804	0					99	47	4	0	0	0	0.064607	3	4332	4332;4360;4391		110.34	30.398	1	10867000			15540	15052	12645	12666	17181;17182;17183	17181					0.006006388292917109
HAVHVALVL	9	Unmodified	_HAVHVALVL_					0	0	0		nc|ENSG00000102900|Q8N1F7-2|NUP93;ENSG00000102900|ENST00000308159|NUP93;NUP93|p.A632Qfs*4|1|0.04|ENSG00000102900|chr16:56836712-56836713|GC/-|frameshift_variant;NUP93|p.L692Yfs*5|1|0.15|ENSG00000102900|chr16:56839006-56839007|-/TA|frameshift_variant	nc|ENSG00000102900|Q8N1F7-2|NUP93	nc|ENSG00000102900|Q8N1F7-2|NUP93	MULTI-MSMS	OvCa99_classI_Rep5	1	479.7967529296875	2	479.795269	957.575986	1.8882	0.00090593	0.23737	0.00011389	2.1255	0.0010198	479.7952627701342	81.872	1.0591	81.872	81.248	82.307	0					52	25	3	0	0	0	0.32242	1	8464	8464		60.404	14.452	1	2302500			15541	2265	12646	12667	17184	17184					0.09550074267974651
HAVLPPII	8	Unmodified	_HAVLPPII_					0	0	0		ENSG00000162994|ENST00000401408|CLHC1;ENST00000463300.1_1_2:55445673-55449583:-|nuORF	ENSG00000162994|ENST00000401408|CLHC1	ENSG00000162994|ENST00000401408|CLHC1	MULTI-MSMS	OvCa9_classI_Rep2	2	430.2735900878906	2	430.273638	858.532724	-0.29706	-0.00012782	0.34891	0.00015013	0.051854	2.2311E-05	430.27363198332677	107.54	1.9628	107.24	106.57	108.54	-0.30836					111	39	5	0	0	0	0.69862	1	10074	10074		43.626	0	1	399440			15542	6253	12647	12668	17185	17185					0.09779884490706081
HAVLPPII	8	Unmodified	_HAVLPPII_					0	0	0		ENSG00000162994|ENST00000401408|CLHC1;ENST00000463300.1_1_2:55445673-55449583:-|nuORF	ENSG00000162994|ENST00000401408|CLHC1	ENSG00000162994|ENST00000401408|CLHC1	MULTI-MSMS	OvCa9_classI_Rep3	3	430.2733459472656	2	430.273638	858.532724	0.52903	0.00022763	-0.44668	-0.0001922	0.08235	3.5433E-05	430.27333471569034	108.54	1.6558	107.34	106.9	108.56	-1.1978					82	31	3	0	0	0	0.69862	1	7741	7741		43.626	0	1	490810			15543	6253	12647	12668	17186	17186					0.09779884490706081
HAYLSKNSL	9	Unmodified	_HAYLSKNSL_					0	0	0		ENST00000476047.1_1_3:76483919-76484456:+|nuORF;ENST00000461993.1_1_1:40535258-40537202:+|nuORF;ZMPSTE24-CAP1|1|fusion;nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1;PPT1-CAP1|1|fusion;PPT1-CAP1|2|fusion;ENST00000494114.1_1_1:40536414-40537202:+|nuORF;ENST00000417455.1_1_10:44100293-44100833:-|nuORF	ENST00000476047.1_1_3:76483919-76484456:+|nuORF	ENST00000476047.1_1_3:76483919-76484456:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	516.7785034179688	2	516.777274	1031.53999	-0.74387	-0.00038442	0.27818	0.00014376	-0.46569	-0.00024066	516.7773683900764	49.186	1.6108	49.186	48.94	50.551	0					63	36	2	0	0	0	0.053172	2	3664	3642;3664		116.9	54.796	1	6909600			15544	4050	12648	12669	17187;17188	17188					0.02548572300474916
HCAARRPRPEP	11	Unmodified	_HCAARRPRPEP_					0	0	0		ENST00000543035.5_2_12:3069019-3069091:+|nuORF	ENST00000543035.5_2_12:3069019-3069091:+|nuORF	ENST00000543035.5_2_12:3069019-3069091:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	429.7376403808594	3	430.559645	1288.65711	0.12056	5.1908E-05	2.1623	0.00093102	2.2829	0.00098292	430.5609712793136	46.866	0.44521	46.866	46.631	47.076	0					12	9	2	0	0	0	0.026145	1	3365	3365		17.833	4.8757	1	78693			15545	13485	12649	12670	17189	17189					0.02432406968455325
HCCLLLKLN	9	Unmodified	_HCCLLLKLN_					0	0	0			REV__ENST00000437682.6_2_8:39022337-39022657:+|nuORF	REV__ENST00000437682.6_2_8:39022337-39022657:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.3052978515625	2	528.788272	1055.56199	0.20043	0.00010599	1.602	0.00084711	1.8024	0.0009531	528.7888998940656	45.29	0.34524	45.29	45.068	45.413	0					13	7	3	0	0	0	0.027456	1	3132	3132		47.916	15.961	1	160710	+		15546	25798	12650	12671	17190	17190					0.03643337453036111
HCDRIIAVF	9	Unmodified	_HCDRIIAVF_					0	0	0		ENST00000337565.9_1_2:111878510-111881339:+|nuORF	ENST00000337565.9_1_2:111878510-111881339:+|nuORF	ENST00000337565.9_1_2:111878510-111881339:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.8060913085938	2	537.281669	1072.54878	-1.3002	-0.00069857	1.8262	0.00098118	0.526	0.00028261	537.2826047598437	74.48	0.83749	72.509	72.009	72.847	-1.9711					23	9	4	0	0	0	0.027441	1	6083	6083		45.952	5.3793	1	46837			15547	10528	12651	12672	17191	17191					0.015412226653097605
HCFLWPLVTF	10	Unmodified	_HCFLWPLVTF_					0	0	0		ENSG00000135643|ENST00000258111|KCNMB4	ENSG00000135643|ENST00000258111|KCNMB4	ENSG00000135643|ENST00000258111|KCNMB4	MULTI-SECPEP	OvCa99_classI_Rep5	1	631.7589721679688	2	631.823169	1261.63179	1.6211	0.0010243	-2.491	-0.0015738	-0.86982	-0.00054958	631.8231092434455	146.18	1.2864	146.18	145.68	146.96	0					64	25	4	0	0	0	0.026822	1	17090	17090		30.504	15.171	1	255590			15548	4396	12652	12673	17192	17192					0.011435393932970328
HCFWGVGQ	8	Unmodified	_HCFWGVGQ_					0	0	0			REV__ENST00000514463.1_1_3:126157220-126159113:-|nuORF	REV__ENST00000514463.1_1_3:126157220-126159113:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	466.79388427734375	2	467.20543	932.396307	0.35	0.00016352	1.4271	0.00066673	1.7771	0.00083025	467.20571471997056	114.27	1.0705	113.22	112.58	113.65	-1.055					29	20	2	0	0	0	0.028476	1	8480	8480		39.021	0	1	10178	+		15549	26984	12653	12674	17193	17193					-0.07259553011454045
HCGWCVLHS	9	Unmodified	_HCGWCVLHS_					0	0	0		ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.3222045898438	2	521.223297	1040.43204	-0.11173	-5.8234E-05	3.1416	0.0016375	3.0298	0.0015792	521.2249737298664	59.679	0.67117	56.898	56.557	57.228	-2.7801					16	12	2	0	0	0	0.027462	1	4338	4338		33.516	0	1	13275			15550	3028	12654	12675	17194	17194					-0.08655838826120998
HCHNKYETP	9	Unmodified	_HCHNKYETP_					0	0	0		tr|A0A7D7A2W9|A0A7D7A2W9_9CLOTPcfJdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19305PE=4SV=1	tr|A0A7D7A2W9|A0A7D7A2W9_9CLOTPcfJdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19305PE=4SV=1	tr|A0A7D7A2W9|A0A7D7A2W9_9CLOTPcfJdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19305PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.8528442382812	2	564.74819	1127.48183	-0.96688	-0.00054605	3.9846	0.0022503	3.0178	0.0017043	564.7502540380417	43.785	0.47415	43.785	43.521	43.995	0					25	10	3	0	0	0	0.027462	1	2894	2894		33.516	19.378	1	575080			15551	36092	12655	12676	17195	17195					-0.07681432616482198
HCIFCTEHWS	10	Unmodified	_HCIFCTEHWS_					0	0	0			REV__ENSG00000115641|ENST00000530340|FHL2	REV__ENSG00000115641|ENST00000530340|FHL2	MULTI-MSMS	OvCa99_classI_Rep5	1	631.7589721679688	2	631.757701	1261.50085	1.5947	0.0010075	-0.57805	-0.00036519	1.0167	0.0006423	631.7571090392981	146.02	0.69847	146.02	145.78	146.47	0					37	13	4	0	0	0	0.55145	1	17090	17090		47.916	19.834	1	417330	+		15552	18261	12656	12677	17196	17196					-0.119442193170471
HCLGRRPLL	9	Unmodified	_HCLGRRPLL_					0	0	0		ENST00000356522.4_1_1:208061224-208062051:-|nuORF	ENST00000356522.4_1_1:208061224-208062051:-|nuORF	ENST00000356522.4_1_1:208061224-208062051:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.3487548828125	2	532.810928	1063.6073	1.6398	0.00087371	0.4007	0.0002135	2.0405	0.0010872	532.8108868478741	138.23	0.61501	138.23	137.93	138.55	0					27	12	3	0	0	0	0.027462	1	16125	16125		33.516	6.7195	1	201040			15553	10697	12657	12678	17197	17197					0.07804324030439602
HCLQPACALL	10	Unmodified	_HCLQPACALL_					0	0	0		ENST00000202556.13_1_14:104208614-104209084:-|nuORF	ENST00000202556.13_1_14:104208614-104209084:-|nuORF	ENST00000202556.13_1_14:104208614-104209084:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.3416137695312	2	534.77008	1067.52561	0.033964	1.8163E-05	-0.81988	-0.00043845	-0.78592	-0.00042028	535.2707064069506	60.944	0.21264	60.944	60.772	60.984	0					7	4	2	0	0	0	0.027021	1	5323	5323		29.15	0	1	232900			15554	9647	12658	12679	17198	17198					-0.005455394436921779
HCNSEKIRTR	10	Unmodified	_HCNSEKIRTR_					0	0	0			REV__ENST00000465772.5_1_10:27793310-27827017:+|nuORF	REV__ENST00000465772.5_1_10:27793310-27827017:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.561767578125	3	415.215656	1242.62514	0.052559	2.1823E-05	-2.7506	-0.0011421	-2.6981	-0.0011203	415.21356386777813	25.618	0.25075	25.618	25.493	25.743	0					7	4	2	0	0	0	0.027088	1	582	582		19.263	2.5453	1	24152	+		15555	26177	12659	12680	17199	17199					0.013529944946185424
HCNSFNRSM	9	Unmodified	_HCNSFNRSM_					0	0	0			REV__ENST00000413279.1_1_2:136269117-136269381:-|nuORF	REV__ENST00000413279.1_1_2:136269117-136269381:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	547.2992553710938	2	548.226568	1094.43858	-0.45164	-0.0002476	-2.2188	-0.0012164	-2.6704	-0.001464	548.2253487101981	114.43	0.59375	113.38	113.15	113.75	-1.055					23	11	3	0	0	0	0.027462	1	8486	8486		23.042	3.939	1	31007	+		15556	25507	12660	12681	17200	17200					-0.10485945665391228
HCQHRALDM	9	Unmodified	_HCQHRALDM_					0	0	0			REV__ENST00000596504.1_1_19:52076640-52084668:+|nuORF	REV__ENST00000596504.1_1_19:52076640-52084668:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.8658447265625	2	555.75021	1109.48587	-0.25016	-0.00013903	-1.0681	-0.00059361	-1.3183	-0.00073263	555.749365480982	54.471	0.63851	54.471	54.253	54.891	0					27	14	3	0	0	0	0.027462	1	4428	4428		30.504	3.7075	1	914630	+		15557	27995	12661	12682	17201	17201					-0.0644966639440554
HCQQRMLGW	9	Unmodified	_HCQQRMLGW_					0	0	0		ENST00000453153.6_2_2:170386372-170386426:-|nuORF	ENST00000453153.6_2_2:170386372-170386426:-|nuORF	ENST00000453153.6_2_2:170386372-170386426:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.845458984375	2	579.768403	1157.52225	0.56481	0.00032746	4.4858	0.0026007	5.0506	0.0029282	579.7714888783058	142.4	0.35094	142.4	142.09	142.44	0					8	6	2	0	0	0	0.027462	1	16601	16601		33.516	4.3455	1	19422			15558	12064	12662	12683	17202	17202					-0.05020789497666556
HCRGCCTSNT	10	Unmodified	_HCRGCCTSNT_					0	0	0			REV__ENSG00000128594|ENST00000249363|LRRC4	REV__ENSG00000128594|ENST00000249363|LRRC4	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.7852172851562	2	541.202235	1080.38992	-0.3548	-0.00019202	-1.2576	-0.00068062	-1.6124	-0.00087263	541.2018723389535	91.303	0.40383	89.279	89.079	89.483	-2.0241					10	7	2	0	0	0	0.027145	1	5696	5696		24.519	7.0512	1	18349	+		15559	18861	12663	12684	17203	17203					-0.14706182296799852
HCTIWFLVL	9	Unmodified	_HCTIWFLVL_					0	0	0		ENST00000592011.5_1_18:44470974-44500050:-|nuORF	ENST00000592011.5_1_18:44470974-44500050:-|nuORF	ENST00000592011.5_1_18:44470974-44500050:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	565.7864990234375	2	566.304613	1130.59467	-0.46844	-0.00026528	1.7825	0.0010094	1.314	0.00074413	566.3054703430255	94.163	1.2045	93.063	92.696	93.901	-1.0995					60	23	4	0	0	0	0.027433	1	8449	8449		38.806	0	1	204970			15560	14129	12664	12685	17204	17204					0.034598678475276756
HCVCRILQ	8	Unmodified	_HCVCRILQ_					0	0	0			REV__ENST00000261497.8_1_17:20905422-20905743:-|nuORF	REV__ENST00000261497.8_1_17:20905422-20905743:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.79681396484375	2	486.249314	970.484076	-0.87203	-0.00042402	4.0631	0.0019757	3.1911	0.0015517	486.2508300358394	54.089	0.6155	50.842	50.517	51.132	-3.2474					25	11	3	0	0	0	0.028476	1	3305	3305		33.516	0	1	22737	+		15561	23953	12665	12686	17205	17205					-0.002346754123550454
HCVFKIVSI	9	Unmodified	_HCVFKIVSI_					0	0	0		ENST00000238831.8_1_2:32530875-32530977:+|nuORF	ENST00000238831.8_1_2:32530875-32530977:+|nuORF	ENST00000238831.8_1_2:32530875-32530977:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.8246459960938	2	523.296788	1044.57902	-1.2333	-0.00064536	0.92122	0.00048207	-0.31204	-0.00016329	523.7999576465882	81.08	0.92915	78.37	77.81	78.739	-2.7106					37	18	4	0	0	0	0.027433	1	6687	6687		51.335	12.582	1	46471			15562	9753	12666	12687	17206	17206					0.05851581330489353
HCVHVNSREM	10	Unmodified	_HCVHVNSREM_					0	0	0		tr|A0A7D6ZI08|A0A7D6ZI08_9CLOTPutativeaminohydrolaseSsnAOS=ClostridiumintestinaleOX=36845GN=ssnAPE=4SV=1	tr|A0A7D6ZI08|A0A7D6ZI08_9CLOTPutativeaminohydrolaseSsnAOS=ClostridiumintestinaleOX=36845GN=ssnAPE=4SV=1	tr|A0A7D6ZI08|A0A7D6ZI08_9CLOTPutativeaminohydrolaseSsnAOS=ClostridiumintestinaleOX=36845GN=ssnAPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	404.5182800292969	3	404.518458	1210.53355	0.99945	0.00040429	-2.3419	-0.00094732	-1.3424	-0.00054303	404.5177410357597	35.451	1.647	35.451	35.149	36.796	0					92	35	5	0	0	0	0.62712	1	1804	1804		38.754	3.258	1	6532700			15563	35599	12667	12688	17207	17207					-0.06330012194212031
HCVLEQLQA	9	Unmodified	_HCVLEQLQA_					0	0	0			REV__ENSG00000143624|ENST00000318967|INTS3	REV__ENSG00000143624|ENST00000318967|INTS3	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.77783203125	2	520.763309	1039.51206	-0.39129	-0.00020377	-3.8108	-0.0019845	-4.2021	-0.0021883	520.7612005586941	97.659	0.7966	95.9	95.62	96.417	-1.7595					34	15	3	0	0	0	0.027462	1	6530	6530		18.324	0.95945	1	124500	+		15564	19858	12668	12689	17208	17208					-0.006110739512450891
HCYMEYSRL	9	Unmodified	_HCYMEYSRL_					0	0	0		ENST00000588393.5_1_19:10742408-10745595:+|nuORF;ENST00000588465.5_1_19:10713206-10745972:+|nuORF;nc|ENSG00000129353|Q8IWA5-3|SLC44A2;ENSG00000129353|ENST00000335757|SLC44A2;nc|ENSG00000129353|Q8IWA5-2|SLC44A2	ENST00000588393.5_1_19:10742408-10745595:+|nuORF	ENST00000588393.5_1_19:10742408-10745595:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	601.3170776367188	2	601.260076	1200.5056	2.6502	0.0015934	-0.25204	-0.00015154	2.3981	0.0014419	601.2594687899974	121.14	0.27966	121.14	120.97	121.25	0					9	6	2	0	0	0	0.027462	1	13931	13931		23.042	0	1	39775			15565	3929	12669	12690	17209	17209					-0.08663335174287567
HCYVCQLAAR	10	Unmodified	_HCYVCQLAAR_					0	0	0			REV__ZNF521|p.K1072Yfs*19|1|0.04|ENSG00000198795|chr18:25224705-25224706|-/TTTAGAAACCAGGTGATAA|frameshift_variant	REV__ZNF521|p.K1072Yfs*19|1|0.04|ENSG00000198795|chr18:25224705-25224706|-/TTTAGAAACCAGGTGATAA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	582.3350219726562	2	582.27606	1162.53757	-2.061	-0.0012	3.9555	0.0023032	1.8945	0.0011031	582.2782752332196	88.698	0.89274	86.095	85.832	86.725	-2.6027					30	17	2	0	0	0	0.026871	1	7550	7550		21.96	4.5949	1	83445	+		15566	23063	12670	12691	17210	17210					-0.03719922700497591
HCYVCQLAAR	10	Unmodified	_HCYVCQLAAR_					0	0	0			REV__ZNF521|p.K1072Yfs*19|1|0.04|ENSG00000198795|chr18:25224705-25224706|-/TTTAGAAACCAGGTGATAA|frameshift_variant	REV__ZNF521|p.K1072Yfs*19|1|0.04|ENSG00000198795|chr18:25224705-25224706|-/TTTAGAAACCAGGTGATAA|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	582.27606	1162.53757	1.0837	0.00063101	1.0118	0.00058914	2.0955	0.0012202	582.2763587186912	87.398	1.2326	85.966	85.543	86.775	-1.4311	-0.082881	-0.002761	NaN	15.642	39	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29147	+		15567	23063	12670	12691							-0.03719922700497591
HCYVCQLAAR	10	Unmodified	_HCYVCQLAAR_					0	0	0			REV__ZNF521|p.K1072Yfs*19|1|0.04|ENSG00000198795|chr18:25224705-25224706|-/TTTAGAAACCAGGTGATAA|frameshift_variant	REV__ZNF521|p.K1072Yfs*19|1|0.04|ENSG00000198795|chr18:25224705-25224706|-/TTTAGAAACCAGGTGATAA|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	582.27606	1162.53757	-1.6269	-0.00094731	4.4461	0.0025889	2.8192	0.0016415	582.2784264951172	88.217	0.99162	86.086	85.854	86.846	-2.1309	0.037033	0.0012384	NaN	15.642	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101150	+		15568	23063	12670	12691							-0.03719922700497591
HDAAGLRGL	9	Unmodified	_HDAAGLRGL_					0	0	0		ENST00000445173.1_1_X:145701381-145701483:-|nuORF	ENST00000445173.1_1_X:145701381-145701483:-|nuORF	ENST00000445173.1_1_X:145701381-145701483:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	455.2485046386719	2	455.248683	908.482814	1.2721	0.00057911	-1.0432	-0.0004749	0.2289	0.00010421	455.248089050098	36.173	1.2466	33.324	32.889	34.136	-2.849					52	24	3	0	0	0	0.56889	1	1229	1229		35.618	0.41757	1	88079			15569	11971	12671	12692	17211	17211					0.02491149814761684
HDAAGLRGL	9	Unmodified	_HDAAGLRGL_					0	0	0		ENST00000445173.1_1_X:145701381-145701483:-|nuORF	ENST00000445173.1_1_X:145701381-145701483:-|nuORF	ENST00000445173.1_1_X:145701381-145701483:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	455.248683	908.482814	0.090399	4.1154E-05	1.7954	0.00081738	1.8858	0.00085853	455.2486436871369	33.242	0.6377	33.242	32.796	33.434	0	-0.04114	0.0025303	NaN	35.618	14	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9733.9			15570	11971	12671	12692							0.02491149814761684
HDEAIVPII	9	Unmodified	_HDEAIVPII_					0	0	0		MAP3K9|p.Q696Sfs*20|1|0.12|ENSG00000006432|chr14:70733283-70733284|-/A|frameshift_variant;ENSG00000006432|ENST00000554752|MAP3K9;nc|ENSG00000006432|P80192-4|MAP3K9	MAP3K9|p.Q696Sfs*20|1|0.12|ENSG00000006432|chr14:70733283-70733284|-/A|frameshift_variant	MAP3K9|p.Q696Sfs*20|1|0.12|ENSG00000006432|chr14:70733283-70733284|-/A|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	503.7850341796875	2	503.782025	1005.5495	1.2078	0.00060846	1.262	0.00063576	2.4698	0.0012442	503.78252342914	144.41	0.68181	144.41	144.11	144.79	0					30	13	3	0	0	0	0.50066	1	16865	16865		42.474	1.0478	1	115230			15571	876	12672	12693	17212	17212					0.04694340586001999
HDEQKGPE	8	Unmodified	_HDEQKGPE_					0	0	0		ADAMTS1|p.E585Nfs*94|1|0.16|ENSG00000154734|chr21:26839974-26839974|C/-|frameshift_variant;ADAMTS1|p.V753Efs*8|1|0.15|ENSG00000154734|chr21:26838225-26838226|-/GAGGGCTAAAGCTGCGAATT|frameshift_variant;ADAMTS1|p.Q755Efs*21|1|0.18|ENSG00000154734|chr21:26838224-26838225|-/TTTG|frameshift_variant;ENSG00000154734|ENST00000284984|ADAMTS1	ADAMTS1|p.E585Nfs*94|1|0.16|ENSG00000154734|chr21:26839974-26839974|C/-|frameshift_variant	ADAMTS1|p.E585Nfs*94|1|0.16|ENSG00000154734|chr21:26839974-26839974|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	470.2109375	2	470.211963	938.409374	0.22869	0.00010753	-1.8411	-0.00086569	-1.6124	-0.00075816	470.21095810442347	111.25	1.4293	111.11	110.73	112.16	-0.13961					80	28	4	0	0	0	0.73938	1	10511	10511		31.955	0.42505	1	321870			15572	29	12673	12694	17213	17213					-0.06229443418374103
HDEWERLVEYF	11	Unmodified	_HDEWERLVEYF_					0	0	0			REV__nc|ENSG00000140326|Q8IWY9-1|CDAN1	REV__nc|ENSG00000140326|Q8IWY9-1|CDAN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3402404785156	3	508.236891	1521.68884	0.11095	5.6387E-05	-0.23289	-0.00011836	-0.12194	-6.1977E-05	508.57088189413946	64.741	0.41866	64.741	64.375	64.793	0					11	9	2	0	0	0	0.026345	1	5882	5882		11.455	4.795	1	160960	+		15573	19663	12674	12695	17214	17214					-0.05113366587283963
HDGLHVASL	9	Unmodified	_HDGLHVASL_					0	0	0		nc|ENSG00000109046|Q9Y6I7-4|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000109046|ENST00000262394|WSB1	nc|ENSG00000109046|Q9Y6I7-4|WSB1	nc|ENSG00000109046|Q9Y6I7-4|WSB1	MULTI-MSMS	OvCa9_classI_Rep2	2	474.7478332519531	2	474.748516	947.482479	-1.3033	-0.00061872	1.2439	0.00059054	-0.05936	-2.8181E-05	474.74900185126876	68.148	2.1314	65.487	65.041	67.172	-2.661					95	42	3	0	0	0	0.055688	8	5370	5340;5344;5350;5356;5363;5370;5377;5383		115.46	45.845	1	486300			15574	2690	12675	12696	17215;17216;17217;17218;17219;17220;17221;17222	17220					0.00663730094913717
HDGLHVASL	9	Unmodified	_HDGLHVASL_					0	0	0		nc|ENSG00000109046|Q9Y6I7-4|WSB1;ENST00000467843.6_1_17:25636020-25639392:+|nuORF;nc|ENSG00000109046|Q9Y6I7-2|WSB1;ENSG00000109046|ENST00000262394|WSB1	nc|ENSG00000109046|Q9Y6I7-4|WSB1	nc|ENSG00000109046|Q9Y6I7-4|WSB1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	474.748516	947.482479	0.14088	6.6885E-05	-0.40838	-0.00019388	-0.2675	-0.000127	474.7481927717265	69.071	1.907	65.58	65.262	67.169	-3.4902	0.046762	-0.000964	NaN	115.46	81	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	710070			15575	2690	12675	12696							0.00663730094913717
HDGRISFDEY	10	Unmodified	_HDGRISFDEY_					0	0	0		ENSG00000188643|ENST00000368706|S100A16;ENST00000474991.1_1_1:153580012-153580192:-|nuORF	ENSG00000188643|ENST00000368706|S100A16	ENSG00000188643|ENST00000368706|S100A16	MULTI-MSMS	OvCa99_classI_Rep5	1	619.77783203125	2	619.775459	1237.53637	-0.11029	-6.8355E-05	0.32618	0.00020216	0.21589	0.0001338	619.7754966099768	70.812	0.78374	70.812	70.565	71.349	0					46	19	4	0	0	0	0.43433	1	6818	6818		63.534	17.077	1	2090000			15576	8487	12676	12697	17223	17223					-0.07290142264037058
HDGRNAMLN	9	Unmodified	_HDGRNAMLN_					0	0	0			REV__nc|ENSG00000198947|P11532-3|DMD	REV__nc|ENSG00000198947|P11532-3|DMD	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.7725219726562	2	514.240532	1026.46651	1.5731	0.00080894	-1.1702	-0.00060178	0.40285	0.00020716	514.7388037911518	83.757	0.54507	83.757	83.419	83.965	0					17	12	2	0	0	0	0.027462	1	8719	8719		34.173	13.226	1	110300	+		15577	23099	12677	12698	17224	17224					-0.04566299413636443
HDHIEKRLR	9	Unmodified	_HDHIEKRLR_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OvCa9_classI_Rep2	2	602.9104614257812	2	602.338895	1202.66324	-1.2563	-0.00075674	0.19833	0.00011946	-1.058	-0.00063728	602.338907163647	56.495	1.3886	53.691	53.126	54.515	-2.804					71	27	4	0	0	0	0.027462	1	4075	4075		27.882	0	1	210540	+		15578	18991	12678	12699	17225	17225					0.07001248471601684
HDKIVIVL	8	Unmodified	_HDKIVIVL_					0	0	0		ENST00000472654.1_1_X:48933860-48934482:-|nuORF;ENSG00000196998|ENST00000376372|WDR45;nc|ENSG00000196998|Q9Y484-3|WDR45;nc|ENSG00000196998|Q9Y484-2|WDR45	ENST00000472654.1_1_X:48933860-48934482:-|nuORF	ENST00000472654.1_1_X:48933860-48934482:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	468.7987976074219	2	468.797478	935.580402	0.023996	1.1249E-05	-0.11288	-5.2916E-05	-0.08888	-4.1667E-05	468.79730687464024	91.055	2.1348	88.512	88.142	90.277	-2.5425					74	41	3	0	0	0	0.57734	2	7882	7857;7882		68.787	20.871	1	252770			15579	8669	12679	12700	17226;17227	17227					0.11003538690886217
HDKIVIVL	8	Unmodified	_HDKIVIVL_					0	0	0		ENST00000472654.1_1_X:48933860-48934482:-|nuORF;ENSG00000196998|ENST00000376372|WDR45;nc|ENSG00000196998|Q9Y484-3|WDR45;nc|ENSG00000196998|Q9Y484-2|WDR45	ENST00000472654.1_1_X:48933860-48934482:-|nuORF	ENST00000472654.1_1_X:48933860-48934482:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	468.797478	935.580402	1.6788	0.00078701	-1.546	-0.00072477	0.13277	6.2243E-05	468.79663410123743	89.562	1.8963	88.26	87.938	89.834	-1.302	-0.13753	-0.00092702	NaN	68.787	58	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257620			15580	8669	12679	12700							0.11003538690886217
HDKIVIVL	8	Unmodified	_HDKIVIVL_					0	0	0		ENST00000472654.1_1_X:48933860-48934482:-|nuORF;ENSG00000196998|ENST00000376372|WDR45;nc|ENSG00000196998|Q9Y484-3|WDR45;nc|ENSG00000196998|Q9Y484-2|WDR45	ENST00000472654.1_1_X:48933860-48934482:-|nuORF	ENST00000472654.1_1_X:48933860-48934482:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	468.797478	935.580402	-0.43274	-0.00020287	0.33167	0.00015548	-0.10107	-4.7382E-05	468.7975089529833	90.501	1.9288	88.42	88.056	89.985	-2.0805	0.022766	0.00083349	NaN	68.787	82	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247680			15581	8669	12679	12700							0.11003538690886217
HDKWVCVDGSI	11	Unmodified	_HDKWVCVDGSI_					0	0	0			REV__ENST00000553281.5_1_14:89088194-89171927:-|nuORF	REV__ENST00000553281.5_1_14:89088194-89171927:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	629.849609375	2	629.79788	1257.58121	-0.64712	-0.00040756	0.011849	7.4626E-06	-0.63527	-0.00040009	629.7973487843975	82.093	0.52693	79.41	79.109	79.635	-2.683					12	10	2	0	0	0	0.025265	1	6795	6795		60.118	5.3419	1	20702	+		15582	21096	12680	12701	17228	17228					-0.03728034722348639
HDLFEKTT	8	Unmodified	_HDLFEKTT_					0	0	0			REV__tr|A0A553SL29|A0A553SL29_NIACISegregationandcondensationproteinBOS=NialliacirculansOX=1397GN=scpBPE=3SV=1	REV__tr|A0A553SL29|A0A553SL29_NIACISegregationandcondensationproteinBOS=NialliacirculansOX=1397GN=scpBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	495.8031005859375	2	495.748182	989.481811	1.2133	0.00060148	-1.9566	-0.00096998	-0.74331	-0.00036849	495.74716390303496	129.44	0.54324	129.21	128.97	129.51	-0.22696					16	10	2	0	0	0	0.028476	1	12718	12718		18.324	0	1	17804	+		15583	30177	12681	12702	17229	17229					-0.013351093448136453
HDLKTPALVI	10	Unmodified	_HDLKTPALVI_					0	0	0		ENST00000426528.5_1_X:102139368-102152590:+|nuORF	ENST00000426528.5_1_X:102139368-102152590:+|nuORF	ENST00000426528.5_1_X:102139368-102152590:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8301391601562	2	553.832049	1105.64954	-0.12008	-6.6502E-05	-3.596	-0.0019916	-3.7161	-0.0020581	553.8299276335473	138.55	4.0786	138.32	136.16	140.24	-0.22696					182	83	3	0	0	0	0.59703	1	13907	13907		42.396	6.7778	1	64451			15584	11737	12682	12703	17230	17230					0.10094577919790026
HDLSKGVI	8	Unmodified	_HDLSKGVI_					0	0	0		tr|A0A553SH38|A0A553SH38_NIACISulPfamilyinorganicaniontransporterOS=NialliacirculansOX=1397GN=CEQ21_12060PE=4SV=1	tr|A0A553SH38|A0A553SH38_NIACISulPfamilyinorganicaniontransporterOS=NialliacirculansOX=1397GN=CEQ21_12060PE=4SV=1	tr|A0A553SH38|A0A553SH38_NIACISulPfamilyinorganicaniontransporterOS=NialliacirculansOX=1397GN=CEQ21_12060PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	435.7196350097656	2	434.747985	867.481417	0.83359	0.0003624	-0.94128	-0.00040922	-0.10769	-4.6818E-05	434.7473960686203	57.781	0.46095	57.781	57.566	58.027	0					17	10	2	0	0	0	0.028476	1	4876	4876		27.882	4.8398	1	375180			15585	33233	12683	12704	17231	17231					0.04237515726015317
HDNLSTSRAKA	11	Unmodified	_HDNLSTSRAKA_					0	0	0			REV__ATP8B3|p.T555Kfs*30|1|0.36|ENSG00000130270|chr19:1796800-1796801|-/ACATCCT|frameshift_variant	REV__ATP8B3|p.T555Kfs*30|1|0.36|ENSG00000130270|chr19:1796800-1796801|-/ACATCCT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.8827819824219	3	400.542426	1198.60545	1.4549	0.00058276	2.6603	0.0010656	4.1153	0.0016483	400.54338135492134	46.76	0.39754	46.76	46.587	46.985	0					11	8	2	0	0	0	0.025457	1	3353	3353		15.337	0	1	172400	+		15586	15681	12684	12705	17232	17232					0.014089417555169348
HDREYRFPV	9	Unmodified	_HDREYRFPV_					0	0	0		ENST00000565626.1_1_16:27268693-27268891:-|nuORF	ENST00000565626.1_1_16:27268693-27268891:-|nuORF	ENST00000565626.1_1_16:27268693-27268891:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	407.2189025878906	3	406.871995	1217.59415	1.2873	0.00052376	-0.28136	-0.00011448	1.0059	0.00040928	406.8719461439546	104.33	0.72865	102.9	102.45	103.18	-1.4347					16	13	2	0	0	0	0.027462	1	7238	7238		8.6937	0.28643	1	7661.1			15587	13823	12685	12706	17233	17233					-0.0059383554796568205
HDRKMCIIGLS	11	Unmodified	_HDRKMCIIGLS_					0	0	0		nc|ENSG00000133704|O15397-2|IPO8;ENSG00000133704|ENST00000256079|IPO8	nc|ENSG00000133704|O15397-2|IPO8	nc|ENSG00000133704|O15397-2|IPO8	MULTI-MSMS	OvCa9_classI_Rep2	2	424.88897705078125	3	424.889892	1271.64785	-0.9883	-0.00041992	1.2398	0.0005268	0.25154	0.00010688	424.8904354672349	33.271	1.2911	30.562	30.321	31.612	-2.7097					77	25	4	0	0	0	0.71831	1	1212	1212		23.378	0.81632	1	615830			15588	4232	12686	12707	17234	17234					0.02288877567889358
HDRPHWLI	8	Unmodified	_HDRPHWLI_					0	0	0			REV__ENST00000415794.1_1_3:139212993-139213512:+|nuORF	REV__ENST00000415794.1_1_3:139212993-139213512:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.2864379882812	2	537.2856	1072.55665	-0.95087	-0.00051089	-0.80807	-0.00043416	-1.7589	-0.00094505	537.2849581096708	76.109	1.528	73.17	72.741	74.269	-2.9389					85	31	4	0	0	0	0.66057	1	6022	6022		51.335	4.8787	1	355100	+		15589	25537	12687	12708	17235	17235					0.023271179770972594
HDRYHRVNL	9	Unmodified	_HDRYHRVNL_					0	0	0			REV__ENST00000477094.5_1_7:20686955-20691273:+|nuORF	REV__ENST00000477094.5_1_7:20686955-20691273:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	403.2315979003906	3	403.879372	1208.61629	0.24731	9.9885E-05	2.5951	0.0010481	2.8425	0.001148	404.2136510137552	34.694	0.98521	34.694	34.444	35.429	0					21	15	2	0	0	0	0.027462	1	1759	1759		21.686	6.9921	1	123490	+		15590	15549	12688	12709	17236	17236					0.020323889204746592
HDSAAITVLI	10	Unmodified	_HDSAAITVLI_					0	0	0			REV__ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	REV__ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	520.293212890625	2	520.292756	1038.57096	2.8343	0.0014747	-0.51585	-0.00026839	2.3184	0.0012063	520.2923361696137	88.546	0.87415	88.546	88.13	89.004	0					62	20	4	0	0	0	0.28845	1	9409	9409		82.241	24.011	1	2565300	+		15591	15573	12689	12710	17237	17237					0.05321725614680872
HDVLTLTII	9	Unmodified	_HDVLTLTII_					0	0	0			REV__OR6C2|p.S97Vfs*38|1|0.26|ENSG00000179695|chr12:55452500-55452500|C/-|frameshift_variant	REV__OR6C2|p.S97Vfs*38|1|0.26|ENSG00000179695|chr12:55452500-55452500|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.79443359375	2	512.8055	1023.59645	0.12937	6.6341E-05	-0.81546	-0.00041817	-0.68609	-0.00035183	512.8049798887437	128.57	0.45013	127.11	126.9	127.35	-1.4565					10	8	2	0	0	0	0.027462	1	12317	12317		23.042	6.5693	1	11416	+		15592	22135	12690	12711	17238	17238					0.08559200137142398
HDYPHRVA	8	Unmodified	_HDYPHRVA_					0	0	0		nc|ENSG00000175354|P17706-3|PTPN2;nc|ENSG00000175354|P17706-2|PTPN2;nc|ENSG00000175354|P17706-4|PTPN2;ENSG00000175354|ENST00000309660|PTPN2	nc|ENSG00000175354|P17706-3|PTPN2	nc|ENSG00000175354|P17706-3|PTPN2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.3348388671875	2	497.746308	993.478063	-1.7249	-0.00085854	0.080442	4.004E-05	-1.6444	-0.0008185	497.74600821151574	126.98	1.2008	125.55	125.24	126.45	-1.4357					49	23	3	0	0	0	0.028476	1	12074	12074		28.254	0	1	92115			15593	7538	12691	12712	17239	17239					-0.018937343280072128
HEAAARIQL	9	Unmodified	_HEAAARIQL_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;ENST00000561268.5_1_15:44859616-44864898:-|nuORF;RBFA-SPG11|2|fusion;RBFA-SPG11|1|fusion	nc|ENSG00000104133|Q96JI7-3|SPG11;RBFA-SPG11|2|fusion	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	OvCa99_classI_Rep5	1	504.7837829589844	2	504.78289	1007.55123	-0.45551	-0.00022993	0.033739	1.7031E-05	-0.42177	-0.0002129	504.7827753002797	54.478	0.97824	54.478	54.172	55.15	0					50	22	4	0	0	0	0.083631	1	4387	4387		101.6	40.629	1	2530500			15594	2354;15543	12692	12713	17240	17240					0.047753943946077015
HEAATKAVL	9	Unmodified	_HEAATKAVL_					0	0	0		ENST00000556502.1_1_14:60619584-60632027:-|nuORF;nc|ENSG00000100612|Q9Y394-2|DHRS7;ENSG00000100612|ENST00000557185|DHRS7	ENST00000556502.1_1_14:60619584-60632027:-|nuORF	ENST00000556502.1_1_14:60619584-60632027:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	470.26605224609375	2	470.266542	938.51853	-0.45399	-0.0002135	0.27612	0.00012985	-0.17787	-8.3648E-05	470.26660494425795	37.919	1.6209	37.919	37.621	39.242	0					89	35	4	0	0	0	0.029147	3	2106	2106;2130;2168		136.27	62.293	1	5995800			15595	2091	12693	12714	17241;17242;17243	17241					0.04681187271739873
HEAATKAVL	9	Unmodified	_HEAATKAVL_					0	0	0		ENST00000556502.1_1_14:60619584-60632027:-|nuORF;nc|ENSG00000100612|Q9Y394-2|DHRS7;ENSG00000100612|ENST00000557185|DHRS7	ENST00000556502.1_1_14:60619584-60632027:-|nuORF	ENST00000556502.1_1_14:60619584-60632027:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	470.2666320800781	2	470.266542	938.51853	0.37737	0.00017747	-0.29502	-0.00013874	0.082356	3.8729E-05	470.2662422486657	43.578	2.3378	40.868	40.509	42.847	-2.7097					86	46	4	0	0	0	0.041116	3	2437	2424;2429;2437		125.81	40.455	1	308190			15596	2091	12693	12714	17244;17245;17246	17246					0.04681187271739873
HEAATKAVL	9	Unmodified	_HEAATKAVL_					0	0	0		ENST00000556502.1_1_14:60619584-60632027:-|nuORF;nc|ENSG00000100612|Q9Y394-2|DHRS7;ENSG00000100612|ENST00000557185|DHRS7	ENST00000556502.1_1_14:60619584-60632027:-|nuORF	ENST00000556502.1_1_14:60619584-60632027:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.2679748535156	2	470.266542	938.51853	-0.52207	-0.00024551	0.69475	0.00032672	0.17268	8.1206E-05	470.2667813495052	43.762	2.8232	40.754	40.483	43.307	-3.0074					121	54	5	0	0	0	0.0078217	5	2116	2116;2128;2141;2153;2169		180.93	83.453	1	1362100			15597	2091	12693	12714	17247;17248;17249;17250;17251	17247					0.04681187271739873
HEADKTYML	9	Unmodified	_HEADKTYML_					0	0	0		ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	ENSG00000143155|ENST00000367833|TIPRL	MULTI-MSMS	OvCa99_classI_Rep5	1	554.2620849609375	2	554.260599	1106.50665	-0.35439	-0.00019642	0.14809	8.2079E-05	-0.2063	-0.00011435	554.260524634566	55.702	0.69793	55.702	55.48	56.178	0					43	16	4	0	0	0	0.1149	2	4595	4567;4595		93.143	26.714	1	5637200			15598	5014	12694	12715	17252;17253	17253					-0.04234797533740675
HEAEEGSKL	9	Unmodified	_HEAEEGSKL_					0	0	0		ENSG00000132405|ENST00000409757|TBC1D14	ENSG00000132405|ENST00000409757|TBC1D14	ENSG00000132405|ENST00000409757|TBC1D14	MULTI-MSMS	OvCa99_classI_Rep5	1	500.2408752441406	2	500.240721	998.466889	-0.59073	-0.00029551	-0.28273	-0.00014143	-0.87346	-0.00043694	500.24077115813833	29.162	0.54851	29.162	28.987	29.536	0					29	10	4	0	0	0	0.12515	1	1018	1018		90.37	21.583	1	330090			15599	4137	12695	12716	17254	17254					-0.0324060121280354
HEAEPVRTL	9	Unmodified	_HEAEPVRTL_					0	0	0		ZBTB38|p.Y1070Wfs*9|1|0.19|ENSG00000177311|chr3:141445596-141445597|-/GG|frameshift_variant;ENSG00000177311|ENST00000321464|ZBTB38	ZBTB38|p.Y1070Wfs*9|1|0.19|ENSG00000177311|chr3:141445596-141445597|-/GG|frameshift_variant	ZBTB38|p.Y1070Wfs*9|1|0.19|ENSG00000177311|chr3:141445596-141445597|-/GG|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	526.280517578125	2	526.28018	1050.54581	-1.3714	-0.00072174	0.77543	0.0004081	-0.59596	-0.00031364	526.2805716707546	44.017	1.7596	44.017	43.737	45.496	0					94	39	4	0	0	0	0.0087163	4	2956	2934;2956;2982;3007		209.84	99.72	1	10098000			15600	7671	12696	12717	17255;17256;17257;17258	17256					0.022556708121328484
HEAEPVRTL	9	Unmodified	_HEAEPVRTL_					0	0	0		ZBTB38|p.Y1070Wfs*9|1|0.19|ENSG00000177311|chr3:141445596-141445597|-/GG|frameshift_variant;ENSG00000177311|ENST00000321464|ZBTB38	ZBTB38|p.Y1070Wfs*9|1|0.19|ENSG00000177311|chr3:141445596-141445597|-/GG|frameshift_variant	ZBTB38|p.Y1070Wfs*9|1|0.19|ENSG00000177311|chr3:141445596-141445597|-/GG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	526.2793579101562	2	526.28018	1050.54581	-1.0287	-0.00054137	0.83445	0.00043915	-0.19422	-0.00010221	526.2804078363322	48.909	1.7377	46.148	45.428	47.166	-2.7603					71	34	5	0	0	0	0.3249	1	3071	3071		60.118	13.661	1	171520			15601	7671	12696	12717	17259	17259					0.022556708121328484
HEAEPVRTL	9	Unmodified	_HEAEPVRTL_					0	0	0		ZBTB38|p.Y1070Wfs*9|1|0.19|ENSG00000177311|chr3:141445596-141445597|-/GG|frameshift_variant;ENSG00000177311|ENST00000321464|ZBTB38	ZBTB38|p.Y1070Wfs*9|1|0.19|ENSG00000177311|chr3:141445596-141445597|-/GG|frameshift_variant	ZBTB38|p.Y1070Wfs*9|1|0.19|ENSG00000177311|chr3:141445596-141445597|-/GG|frameshift_variant	MSMS	OvCa9_classI_Rep4_	4	526.2794799804688	2	526.28018	1050.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.15	1	46.009	45.509	46.509	-3.1416								0	0	0	0.12679	1	2753	2753		67.494	1.0644	1				15602	7671	12696	12717	17260	17260					0.022556708121328484
HEAEPVRTL	9	Unmodified	_HEAEPVRTL_					0	0	0		ZBTB38|p.Y1070Wfs*9|1|0.19|ENSG00000177311|chr3:141445596-141445597|-/GG|frameshift_variant;ENSG00000177311|ENST00000321464|ZBTB38	ZBTB38|p.Y1070Wfs*9|1|0.19|ENSG00000177311|chr3:141445596-141445597|-/GG|frameshift_variant	ZBTB38|p.Y1070Wfs*9|1|0.19|ENSG00000177311|chr3:141445596-141445597|-/GG|frameshift_variant	MSMS	OvCa9_classI_Rep4_	4	526.2803955078125	2	526.28018	1050.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.242	1	46.1	45.6	46.6	-3.1416								0	0	0	0.054374	1	2763	2763		77.318	0.47095	1				15603	7671	12696	12717	17261	17261					0.022556708121328484
HEAEPVRTL	9	Unmodified	_HEAEPVRTL_					0	0	0		ZBTB38|p.Y1070Wfs*9|1|0.19|ENSG00000177311|chr3:141445596-141445597|-/GG|frameshift_variant;ENSG00000177311|ENST00000321464|ZBTB38	ZBTB38|p.Y1070Wfs*9|1|0.19|ENSG00000177311|chr3:141445596-141445597|-/GG|frameshift_variant	ZBTB38|p.Y1070Wfs*9|1|0.19|ENSG00000177311|chr3:141445596-141445597|-/GG|frameshift_variant	MSMS	OvCa9_classI_Rep4_	4	526.2813720703125	2	526.28018	1050.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.346	1	46.204	45.704	46.704	-3.1416								0	0	0	0.054374	1	2775	2775		77.318	11.514	1				15604	7671	12696	12717	17262	17262					0.022556708121328484
HEAEPVRTL	9	Unmodified	_HEAEPVRTL_					0	0	0		ZBTB38|p.Y1070Wfs*9|1|0.19|ENSG00000177311|chr3:141445596-141445597|-/GG|frameshift_variant;ENSG00000177311|ENST00000321464|ZBTB38	ZBTB38|p.Y1070Wfs*9|1|0.19|ENSG00000177311|chr3:141445596-141445597|-/GG|frameshift_variant	ZBTB38|p.Y1070Wfs*9|1|0.19|ENSG00000177311|chr3:141445596-141445597|-/GG|frameshift_variant	MSMS	OvCa9_classI_Rep4_	4	526.2813110351562	2	526.28018	1050.54581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.454	1	46.313	45.813	46.813	-3.1416								0	0	0	0.054374	1	2788	2788		77.318	18.536	1				15605	7671	12696	12717	17263	17263					0.022556708121328484
HEAERNIAL	9	Unmodified	_HEAERNIAL_					0	0	0		nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000183054|Q99666-2|RGPD5;RGPD8|p.M1097Sfs*2|1|0.29|ENSG00000169629|chr2:112389655-112389655|A/-|frameshift_variant;ENSG00000196862|ENST00000408999|RGPD4;nc|ENSG00000196862|Q7Z3J3-2|RGPD4;RGPD3|p.Y1334Sfs*11|1|0.08|ENSG00000153165|chr2:106423966-106423966|T/-|frameshift_variant;ENSG00000153165|ENST00000409886|RGPD3	nc|ENSG00000187627|P0DJD0|RGPD1	nc|ENSG00000187627|P0DJD0|RGPD1	MULTI-MSMS	OvCa99_classI_Rep5	1	526.7781982421875	2	526.777805	1051.54106	-0.50192	-0.0002644	-0.12816	-6.7512E-05	-0.63008	-0.00033191	526.7777246370144	47.574	2.2566	47.574	47.294	49.55	0					107	51	5	0	0	0	0.094616	4	3413	3413;3436;3460;3487		98.629	23.516	1	36874000			15606	1004	12697	12718	17264;17265;17266;17267	17264					0.0173478666936262
HEAERNIAL	9	Unmodified	_HEAERNIAL_					0	0	0		nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000183054|Q99666-2|RGPD5;RGPD8|p.M1097Sfs*2|1|0.29|ENSG00000169629|chr2:112389655-112389655|A/-|frameshift_variant;ENSG00000196862|ENST00000408999|RGPD4;nc|ENSG00000196862|Q7Z3J3-2|RGPD4;RGPD3|p.Y1334Sfs*11|1|0.08|ENSG00000153165|chr2:106423966-106423966|T/-|frameshift_variant;ENSG00000153165|ENST00000409886|RGPD3	nc|ENSG00000187627|P0DJD0|RGPD1	nc|ENSG00000187627|P0DJD0|RGPD1	MULTI-MSMS	OvCa9_classI_Rep2	2	526.7771606445312	2	526.777805	1051.54106	-1.403	-0.00073905	0.93347	0.00049173	-0.46949	-0.00024732	526.7781858568062	52.709	2.3292	49.895	49.492	51.822	-2.8139					109	46	4	0	0	0	0.10502	6	3522	3522;3526;3538;3545;3571;3577		95.815	27.028	1	428250			15607	1004	12697	12718	17268;17269;17270;17271;17272;17273	17268					0.0173478666936262
HEAERNIAL	9	Unmodified	_HEAERNIAL_					0	0	0		nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000183054|Q99666-2|RGPD5;RGPD8|p.M1097Sfs*2|1|0.29|ENSG00000169629|chr2:112389655-112389655|A/-|frameshift_variant;ENSG00000196862|ENST00000408999|RGPD4;nc|ENSG00000196862|Q7Z3J3-2|RGPD4;RGPD3|p.Y1334Sfs*11|1|0.08|ENSG00000153165|chr2:106423966-106423966|T/-|frameshift_variant;ENSG00000153165|ENST00000409886|RGPD3	nc|ENSG00000187627|P0DJD0|RGPD1	nc|ENSG00000187627|P0DJD0|RGPD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.7781372070312	2	526.777805	1051.54106	-1.3862	-0.00073021	0.80158	0.00042226	-0.58461	-0.00030796	526.7782207569136	53.013	2.7454	49.805	49.451	52.197	-3.208					130	53	5	0	0	0	0.075543	7	3195	3195;3205;3217;3230;3242;3255;3268		104.06	39.85	1	1609500			15608	1004	12697	12718	17274;17275;17276;17277;17278;17279;17280	17274					0.0173478666936262
HEAERTEVL	9	Unmodified	_HEAERTEVL_					0	0	0		nc|ENSG00000170037|Q8N137-5|CNTROB;ENSG00000170037|ENST00000563694|CNTROB;nc|ENSG00000170037|Q8N137-3|CNTROB;nc|ENSG00000170037|Q8N137-2|CNTROB;CNTROB|p.P683Hfs*15|1|0.09|ENSG00000170037|chr17:7947624-7947624|C/-|frameshift_variant;ENST00000571632.5_1_17:7838298-7849136:+|nuORF;CNTROB|p.G490Vfs*21|1|0.05|ENSG00000170037|chr17:7944145-7944146|-/TATTTTTAGTAGAAACGGGGTTTCACCGT|frameshift_variant;nc|ENSG00000170037|Q8N137-4|CNTROB	nc|ENSG00000170037|Q8N137-5|CNTROB	nc|ENSG00000170037|Q8N137-5|CNTROB	MULTI-MSMS	OvCa99_classI_Rep5	1	542.2745971679688	2	542.275095	1082.53564	-0.28577	-0.00015496	0.018473	1.0018E-05	-0.26729	-0.00014495	542.2750138435208	40.788	1.2827	40.788	40.526	41.809	0					64	28	4	0	0	0	0.075543	1	2497	2497		104.06	32.761	1	1950200			15609	7067	12698	12719	17281	17281					-0.0023293691308481357
HEAETRELL	9	Unmodified	_HEAETRELL_					0	0	0		tr|A0A7D6VR88|A0A7D6VR88_9CLOTTyrosine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=tyrSPE=3SV=1	tr|A0A7D6VR88|A0A7D6VR88_9CLOTTyrosine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=tyrSPE=3SV=1	tr|A0A7D6VR88|A0A7D6VR88_9CLOTTyrosine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=tyrSPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	549.2830200195312	2	549.28292	1096.55129	-0.95699	-0.00052566	0.48005	0.00026368	-0.47694	-0.00026198	549.2831453553769	43.462	1.2104	43.462	43.185	44.396	0					76	27	4	0	0	0	0.14998	1	2861	2861		84.916	0	1	5670200			15610	34903	12699	12720	17282	17282					0.006873496039588645
HEAETRELL	9	Unmodified	_HEAETRELL_					0	0	0		tr|A0A7D6VR88|A0A7D6VR88_9CLOTTyrosine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=tyrSPE=3SV=1	tr|A0A7D6VR88|A0A7D6VR88_9CLOTTyrosine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=tyrSPE=3SV=1	tr|A0A7D6VR88|A0A7D6VR88_9CLOTTyrosine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=tyrSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.284423828125	2	549.28292	1096.55129	-1.7469	-0.00095952	1.1633	0.00063898	-0.58355	-0.00032053	549.2834297855042	48.907	0.93575	45.799	45.553	46.489	-3.1077					53	17	4	0	0	0	0.27001	1	2728	2728		66.429	2.222	1	281690			15611	34903	12699	12720	17283	17283					0.006873496039588645
HEAEVHAESL	10	Unmodified	_HEAEVHAESL_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	OvCa99_classI_Rep5	1	561.26513671875	2	561.264727	1120.5149	-0.034639	-1.9442E-05	-0.40609	-0.00022793	-0.44073	-0.00024737	561.2643919941655	44.462	0.48992	44.462	44.26	44.75	0					25	10	3	0	0	0	0.068739	1	3012	3012		122.18	52.548	1	1028500			15612	7361	12700	12721	17284	17284					-0.040535272927627375
HEAEVLKQL	9	Unmodified	_HEAEVLKQL_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF;nc|ENSG00000117632|P16949-2|STMN1;ENST00000485226.1_1_1:26227942-26230296:-|nuORF	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	OvCa99_classI_Rep5	1	533.8001098632812	2	533.798206	1065.58186	-0.21659	-0.00011562	-0.37744	-0.00020148	-0.59404	-0.0003171	533.7977900012132	61.12	1.1792	61.12	60.859	62.038	0					44	27	3	0	0	0	0.13504	1	5369	5369		87.696	5.4559	1	3354200			15613	3269	12701	12722	17285	17285					0.05169127988983746
HEAEVLKQL	9	Unmodified	_HEAEVLKQL_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF;nc|ENSG00000117632|P16949-2|STMN1;ENST00000485226.1_1_1:26227942-26230296:-|nuORF	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	OvCa9_classI_Rep2	2	533.7969360351562	2	533.798206	1065.58186	-0.010375	-5.5382E-06	-0.478	-0.00025516	-0.48838	-0.0002607	533.7978826919447	65.591	4.3584	62.895	61.733	66.092	-2.6958					173	86	4	0	0	0	0.012051	9	5057	5023;5028;5035;5041;5046;5051;5057;5064;5077		162.25	60.652	1	735170			15614	3269	12701	12722	17286;17287;17288;17289;17290;17291;17292;17293;17294	17292					0.05169127988983746
HEAEVLKQL	9	Unmodified	_HEAEVLKQL_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF;nc|ENSG00000117632|P16949-2|STMN1;ENST00000485226.1_1_1:26227942-26230296:-|nuORF	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.7997436523438	2	533.798206	1065.58186	-1.3658	-0.00072905	0.79378	0.00042372	-0.572	-0.00030533	533.7985494794873	66.368	3.481	62.878	62.223	65.704	-3.4902					140	70	4	0	0	0	0.025955	4	4827	4827;4839;4851;4864		139.97	42.546	1	1278100			15615	3269	12701	12722	17295;17296;17297;17298	17295					0.05169127988983746
HEAHFVVEL	9	Unmodified	_HEAHFVVEL_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;ZNFX1|p.N1130I|1|0.1|ENSG00000124201|chr20:49249635-49249635|T/A|missense_variant	ENSG00000124201|ENST00000396105|ZNFX1;ZNFX1|p.N1130I|1|0.1|ENSG00000124201|chr20:49249635-49249635|T/A|missense_variant	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	OvCa99_classI_Rep5	1	540.7763671875	2	540.777274	1079.53999	2.3904	0.0012927	-0.16778	-9.073E-05	2.2227	0.001202	540.7770776939064	84.282	1.122	84.282	83.965	85.087	0					73	26	5	0	0	0	0.14998	1	8788	8788		84.916	21.609	1	6972300			15616	3631;36327	12702	12723	17299	17299					0.003405723004561878
HEALETTQYL	10	Unmodified	_HEALETTQYL_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	MULTI-MSMS	OvCa99_classI_Rep5	1	602.7942504882812	2	602.79586	1203.57717	1.9508	0.001176	0.34513	0.00020804	2.296	0.001384	602.7961097177513	83.733	1.5459	83.733	83.377	84.923	0					120	36	5	0	0	0	0.17251	1	8706	8706		98.582	30.097	1	9871500			15617	4957	12703	12724	17300	17300					-0.016478009444199415
HEALKENGVT	10	Unmodified	_HEALKENGVT_					0	0	0		nc|ENSG00000108828|Q99536-2|VAT1;nc|ENSG00000108828|Q99536-3|VAT1;ENSG00000108828|ENST00000355653|VAT1	nc|ENSG00000108828|Q99536-2|VAT1	nc|ENSG00000108828|Q99536-2|VAT1	MULTI-MSMS	OvCa99_classI_Rep5	1	549.2828979492188	2	549.28292	1096.55129	-0.95699	-0.00052566	0.48005	0.00026368	-0.47694	-0.00026198	549.2831453553769	43.462	1.2104	43.462	43.185	44.396	0					76	27	4	0	0	0	0.014676	1	2884	2884		154.12	19.308	1	5670200			15618	2678	12704	12725	17301	17301					0.006873496039588645
HEAQHGVTSL	10	Unmodified	_HEAQHGVTSL_					0	0	0		nc|ENSG00000100105|Q9HBE1-4|PATZ1;nc|ENSG00000100105|Q9HBE1-2|PATZ1;nc|ENSG00000100105|Q9HBE1-3|PATZ1;ENSG00000100105|ENST00000266269|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	MULTI-MSMS	OvCa99_classI_Rep5	1	539.7677612304688	2	539.767437	1077.52032	-0.44905	-0.00024238	0.50149	0.00027069	0.052439	2.8305E-05	539.7675891648596	38.64	0.39855	38.64	38.394	38.793	0					26	8	4	0	0	0	0.095035	1	2207	2207		114.86	52.751	1	999940			15619	2009	12705	12726	17302	17302					-0.015338037102765156
HEARAGVLAE	10	Unmodified	_HEARAGVLAE_					0	0	0		ENSG00000125901|ENST00000380325|MRPS26	ENSG00000125901|ENST00000380325|MRPS26	ENSG00000125901|ENST00000380325|MRPS26	MULTI-MSMS	OvCa9_classI_Rep2	2	526.776123046875	2	526.777805	1051.54106	-1.403	-0.00073905	0.93347	0.00049173	-0.46949	-0.00024732	526.7781858568062	52.709	2.3292	49.895	49.492	51.822	-2.8139					109	46	4	0	0	0	0.5675	1	3565	3565		45.972	3.108	1	428250			15620	3753	12706	12727	17303	17303					0.0173478666936262
HEARPLAEL	9	Unmodified	_HEARPLAEL_					0	0	0		nc|ENSG00000140464|P29590-11|PML;ENSG00000140464|ENST00000268058|PML;ENST00000564725.1_1_15:74290377-74317280:+|nuORF;nc|ENSG00000140464|P29590-14|PML;nc|ENSG00000140464|P29590-10|PML;nc|ENSG00000140464|P29590-4|PML;nc|ENSG00000140464|P29590-12|PML;nc|ENSG00000140464|P29590-2|PML;nc|ENSG00000140464|P29590-5|PML;nc|ENSG00000140464|P29590-9|PML;nc|ENSG00000140464|P29590-13|PML;nc|ENSG00000140464|P29590-3|PML;nc|ENSG00000140464|P29590-8|PML	nc|ENSG00000140464|P29590-11|PML;nc|ENSG00000140464|P29590-13|PML	nc|ENSG00000140464|P29590-13|PML	MULTI-MSMS	OvCa99_classI_Rep5	1	518.2841796875	2	518.282723	1034.55089	-0.64828	-0.00033599	-0.0065223	-3.3804E-06	-0.6548	-0.00033937	518.282610916803	58.798	0.86153	58.798	58.403	59.265	0					55	21	4	0	0	0	0.17606	1	5011	5011		80.455	32.797	1	4880100			15621	15055;4843	12707	12728	17304	17304					0.03499974674764417
HEARRHPE	8	Unmodified	_HEARRHPE_					0	0	0		ENST00000538731.2_1_12:132671869-132672118:-|nuORF	ENST00000538731.2_1_12:132671869-132672118:-|nuORF	ENST00000538731.2_1_12:132671869-132672118:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.3078002929688	2	516.260114	1030.50567	-2.3466	-0.0012115	4.4723	0.0023089	2.1257	0.0010974	516.2622769009055	144	0.54407	143.01	142.78	143.33	-0.9903					25	10	3	0	0	0	0.028476	1	11979	11979		24.203	0	1	31230			15622	13425	12708	12729	17305	17305					-0.008358310677749614
HEAVKAIAL	9	Unmodified	_HEAVKAIAL_					0	0	0		nc|ENSG00000054793|O75110-2|ATP9A;ENSG00000054793|ENST00000338821|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	MULTI-MSMS	OvCa99_classI_Rep5	1	476.2861633300781	2	476.284734	950.554916	0.0013524	6.4411E-07	-0.1122	-5.3439E-05	-0.11085	-5.2795E-05	476.28455120022033	60.541	0.97496	60.541	60.314	61.289	0					41	22	3	0	0	0	0.10502	1	5294	5294		95.815	34.843	1	1262500			15623	14876	12709	12730	17306	17306					0.07766064168458797
HEAVKAIVL	9	Unmodified	_HEAVKAIVL_					0	0	0		ENST00000591518.1_1_18:77063623-77067291:+|nuORF;ATP9B|p.V1071Sfs*19|1|0.59|ENSG00000166377|chr18:79374037-79374038|-/A|frameshift_variant;nc|ENSG00000166377|O43861-2|ATP9B;ENSG00000166377|ENST00000426216|ATP9B	ENST00000591518.1_1_18:77063623-77067291:+|nuORF	ENST00000591518.1_1_18:77063623-77067291:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	490.3009948730469	2	490.300384	978.586216	-0.53516	-0.00026239	0.48232	0.00023648	-0.052833	-2.5904E-05	490.3004762352228	66.428	0.99931	66.428	66.174	67.173	0					44	24	3	0	0	0	0.1804	1	6150	6150		79.713	20.931	1	2392400			15624	135	12710	12731	17307	17307					0.09606637202557522
HEAYEVKN	8	Unmodified	_HEAYEVKN_					0	0	0		nc|ENSG00000177842|Q6ZNG0-2|ZNF620;ENSG00000177842|ENST00000314529|ZNF620	nc|ENSG00000177842|Q6ZNG0-2|ZNF620	nc|ENSG00000177842|Q6ZNG0-2|ZNF620	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.7825622558594	2	495.237981	988.461409	-0.13207	-6.5406E-05	2.1042	0.0010421	1.9721	0.00097666	495.23934093016567	62.332	1.8825	58.874	58.244	60.127	-3.4577					82	38	3	0	0	0	0.028476	1	4351	4351		65.803	7.9919	1	212060			15625	7715	12711	12732	17308	17308					-0.03328280004620865
HECLEKFF	8	Unmodified	_HECLEKFF_					0	0	0			REV__tr|A0A7D6ZZ78|A0A7D6ZZ78_9CLOTYgiQfamilyradicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05060PE=3SV=1	REV__tr|A0A7D6ZZ78|A0A7D6ZZ78_9CLOTYgiQfamilyradicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05060PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.7774658203125	2	526.747127	1051.4797	-1.4008	-0.00073787	3.3293	0.0017537	1.9285	0.0010158	526.7486497271184	52.627	0.83832	49.814	49.295	50.134	-2.8129					20	16	2	0	0	0	0.028476	1	3551	3551		37.159	0	1	26521	+		15626	32400	12712	12733	17309	17309					-0.04397861354277666
HEDAMPAHL	9	Unmodified	_HEDAMPAHL_					0	0	0		ENST00000472038.1_1_1:167599603-167633027:+|nuORF	ENST00000472038.1_1_1:167599603-167633027:+|nuORF	ENST00000472038.1_1_1:167599603-167633027:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.28411865234375	2	510.732009	1019.44946	1.1095	0.00056666	-2.6699	-0.0013636	-1.5603	-0.00079692	510.7301666576132	91.076	0.47827	91.076	90.777	91.255	0					21	11	3	0	0	0	0.027462	1	9764	9764		33.516	10.473	1	662320			15627	12390	12713	12734	17310	17310					-0.059482200194679535
HEDAPSTKL	9	Unmodified	_HEDAPSTKL_					0	0	0		ENST00000532517.5_1_11:118498004-118527530:+|nuORF;nc|ENSG00000019144|Q86UU1-2|PHLDB1;ENSG00000019144|ENST00000600882|PHLDB1;nc|ENSG00000019144|Q86UU1-3|PHLDB1	ENST00000532517.5_1_11:118498004-118527530:+|nuORF	ENST00000532517.5_1_11:118498004-118527530:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	499.25091552734375	2	499.251089	996.487624	-0.49532	-0.00024729	-0.25961	-0.00012961	-0.75493	-0.0003769	499.25100266760495	39.04	1.8729	39.04	38.793	40.666	0					91	41	5	0	0	0	0.024645	2	2272	2249;2272		141.52	49.825	1	9341700			15628	1016	12714	12735	17311;17312	17312					-0.01076010833151031
HEDDHNFEL	9	Unmodified	_HEDDHNFEL_					0	0	0		nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2	nc|ENSG00000119787|Q8NHH9-5|ATL2	nc|ENSG00000119787|Q8NHH9-5|ATL2	MULTI-MSMS	OvCa99_classI_Rep5	1	578.2402954101562	2	578.238709	1154.46287	-1.2836	-0.0007422	0.9158	0.00052955	-0.36775	-0.00021265	578.2391316894038	63.835	1.0183	63.835	63.57	64.588	0					65	24	4	0	0	0	0.021573	2	5782	5756;5782		145.16	85.037	1	5837200			15629	3396	12715	12736	17313;17314	17314					-0.10818690706537382
HEDESRTVL	9	Unmodified	_HEDESRTVL_					0	0	0		ENST00000466312.5_1_6:31691160-31692010:+|nuORF;nc|ENSG00000204420|O95866-4|MPIG6B;nc|ENSG00000204420|O95866-5|MPIG6B;nc|ENSG00000204420|O95866-3|MPIG6B;nc|ENSG00000204420|O95866-7|MPIG6B;nc|ENSG00000204420|O95866-6|MPIG6B;nc|ENSG00000204420|O95866-2|MPIG6B;ENSG00000204420|ENST00000649779|MPIG6B	ENST00000466312.5_1_6:31691160-31692010:+|nuORF	ENST00000466312.5_1_6:31691160-31692010:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	543.2640991210938	2	543.264727	1084.5149	-0.56207	-0.00030535	-1.5399	-0.00083655	-2.1019	-0.0011419	543.2647772467035	40.224	1.4622	40.224	39.463	40.926	0					62	32	3	0	0	0	0.083631	1	2430	2430		101.6	16.685	1	832140			15630	8983	12716	12737	17315	17315					-0.0239752729276006
HEDGTELF	8	Unmodified	_HEDGTELF_					0	0	0			REV__nc|ENSG00000168748|P43166-2|CA7	REV__nc|ENSG00000168748|P43166-2|CA7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	474.2888488769531	2	474.208889	946.403226	2.0694	0.00098135	-2.3814	-0.0011293	-0.312	-0.00014795	474.20756359418635	129.46	0.59393	128.01	127.84	128.44	-1.4565					19	11	3	0	0	0	0.028476	1	12398	12398		28.254	0	1	28031	+		15631	21396	12717	12738	17316	17316					-0.07211961649898058
HEDHLRELL	9	Unmodified	_HEDHLRELL_					0	0	0		nc|ENSG00000101335|P24844-2|MYL9;ENSG00000101335|ENST00000279022|MYL9	nc|ENSG00000101335|P24844-2|MYL9	nc|ENSG00000101335|P24844-2|MYL9	MULTI-MSMS	OvCa99_classI_Rep5	1	581.3016357421875	2	581.304187	1160.59382	0.017954	1.0437E-05	-1.1502	-0.0006686	-1.1322	-0.00065816	581.3033146973494	63.203	0.91176	63.203	62.902	63.814	0					79	22	5	0	0	0	0.2077	1	5674	5674		75.043	16.261	1	16444000			15632	2166	12718	12739	17317	17317					0.019947447322010703
HEDIEMTKT	9	Unmodified	_HEDIEMTKT_					0	0	0		ENST00000479543.1_3_11:35283254-35308332:-|nuORF;nc|ENSG00000110436|P43004-3|SLC1A2;nc|ENSG00000110436|P43004-2|SLC1A2;ENSG00000110436|ENST00000278379|SLC1A2	ENST00000479543.1_3_11:35283254-35308332:-|nuORF	ENST00000479543.1_3_11:35283254-35308332:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.7921142578125	2	552.255514	1102.49647	-0.4983	-0.00027519	-2.9988	-0.0016561	-3.4971	-0.0019313	552.2537663683548	51.644	1.1918	51.644	51.418	52.61	0					60	27	4	0	0	0	0.027462	1	4080	4080		16.473	0	1	3345400			15633	2776	12719	12740	17318	17318					-0.05067405258978397
HEDKIRVVL	9	Unmodified	_HEDKIRVVL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	OvCa99_classI_Rep5	1	554.828125	2	554.827298	1107.64004	-0.53519	-0.00029694	-0.54845	-0.00030429	-1.0836	-0.00060123	554.8270476394003	59.245	3.6482	59.245	58.892	62.541	0					319	89	6	0	0	0	0.049969	9	5104	5074;5104;5134;5164;5194;5225;5258;5287;5335		118.74	49.956	1	205940000			15634	1044	12720	12741	17319;17320;17321;17322;17323;17324;17325;17326;17327	17320					0.09052809634272307
HEDKIRVVL	9	Unmodified	_HEDKIRVVL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	OvCa9_classI_Rep2	2	554.8278198242188	2	554.827298	1107.64004	1.2065	0.0006694	-1.3468	-0.00074727	-0.14035	-7.787E-05	554.8263773523807	64.926	1.8333	62.201	61.705	63.538	-2.7245					96	35	5	0	0	0	0.068524	7	4973	4962;4968;4973;4979;4985;4991;4997		108.09	42.819	1	753960			15635	1044	12720	12741	17328;17329;17330;17331;17332;17333;17334	17330					0.09052809634272307
HEDKIRVVL	9	Unmodified	_HEDKIRVVL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.8286743164062	2	554.827298	1107.64004	-0.57116	-0.0003169	0.20534	0.00011393	-0.36583	-0.00020297	554.8272854225368	65.84	1.6119	62.355	62.082	63.694	-3.4854					73	32	4	0	0	0	0.074342	5	4785	4751;4759;4771;4785;4817		104.75	46.749	1	1040500			15636	1044	12720	12741	17335;17336;17337;17338;17339	17338					0.09052809634272307
HEDKMRVVL	9	Unmodified	_HEDKMRVVL_					0	0	0		ENSG00000013016|ENST00000322054|EHD3;EHD3|p.N209K|1|0.28|ENSG00000013016|chr2:31260634-31260634|C/A|missense_variant	ENSG00000013016|ENST00000322054|EHD3	ENSG00000013016|ENST00000322054|EHD3	MSMS	OvCa99_classI_Rep5	1	563.8065185546875	2	563.805508	1125.59646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.95	1	52.95	52.45	53.45	0								0	0	0	0.024931	1	4181	4181		125.81	43.574	1				15637	979	12721	12742	17340	17340					0.038688768654765227
HEDLGHVAL	9	Unmodified	_HEDLGHVAL_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;ENST00000524476.5_1_15:28882105-28886289:+|nuORF;ENST00000529353.1_1_15:28878360-28886587:+|nuORF;ENST00000430598.5_1_15:20613931-20667676:-|nuORF;ENST00000562687.6_3_16:32769598-32772029:+|nuORF;ENST00000428453.5_1_15:20588586-20667676:-|nuORF;nc|ENSG00000290376|Q9BVR0|HERC2P3;ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENSG00000128731|ENST00000261609|HERC2;ENST00000428453.5_1_15:20588586-20667676:-|nuORF;ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	OvCa99_classI_Rep5	1	495.7551574707031	2	495.753798	989.493044	-0.19557	-9.6956E-05	-0.61664	-0.0003057	-0.81221	-0.00040266	495.7534868204306	66.55	1.4731	66.55	66.25	67.723	0					76	36	3	0	0	0	0.032351	2	6160	6160;6190		133.47	74.687	1	21630000			15638	3901;11773;13276	12722	12743	17341;17342	17341					-0.0021228725066748666
HEDLGHVAL	9	Unmodified	_HEDLGHVAL_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;ENST00000524476.5_1_15:28882105-28886289:+|nuORF;ENST00000529353.1_1_15:28878360-28886587:+|nuORF;ENST00000430598.5_1_15:20613931-20667676:-|nuORF;ENST00000562687.6_3_16:32769598-32772029:+|nuORF;ENST00000428453.5_1_15:20588586-20667676:-|nuORF;nc|ENSG00000290376|Q9BVR0|HERC2P3;ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENSG00000128731|ENST00000261609|HERC2;ENST00000428453.5_1_15:20588586-20667676:-|nuORF;ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	OvCa9_classI_Rep2	2	495.7527770996094	2	495.753798	989.493044	0.17426	8.639E-05	-0.28028	-0.00013895	-0.10602	-5.2558E-05	495.75353032234636	70.105	1.9423	67.535	67.115	69.058	-2.5707					84	37	3	0	0	0	0.032351	4	5587	5587;5593;5598;5605		133.47	80.118	1	362320			15639	3901;11773;13276	12722	12743	17343;17344;17345;17346	17343					-0.0021228725066748666
HEDLGHVAL	9	Unmodified	_HEDLGHVAL_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;ENST00000524476.5_1_15:28882105-28886289:+|nuORF;ENST00000529353.1_1_15:28878360-28886587:+|nuORF;ENST00000430598.5_1_15:20613931-20667676:-|nuORF;ENST00000562687.6_3_16:32769598-32772029:+|nuORF;ENST00000428453.5_1_15:20588586-20667676:-|nuORF;nc|ENSG00000290376|Q9BVR0|HERC2P3;ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENSG00000128731|ENST00000261609|HERC2;ENST00000428453.5_1_15:20588586-20667676:-|nuORF;ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.7533874511719	2	495.753798	989.493044	-0.84172	-0.00041728	0.82628	0.00040963	-0.015441	-7.6547E-06	495.7540560169939	71.118	1.5556	67.661	67.393	68.949	-3.4563					90	31	4	0	0	0	0.16524	1	5423	5423		82.305	36.353	1	624590			15640	3901;11773;13276	12722	12743	17347	17347					-0.0021228725066748666
HEDPGQATL	9	Unmodified	_HEDPGQATL_					0	0	0		ENSG00000124177|ENST00000373233|CHD6;ENST00000480022.1_1_20:40033235-40042188:-|nuORF	ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	MULTI-MSMS	OvCa99_classI_Rep5	1	484.2275695800781	2	484.227613	966.440674	-0.43618	-0.00021121	0.28183	0.00013647	-0.15435	-7.4741E-05	484.2276725899171	48.138	1.4329	48.138	47.854	49.287	0					68	32	4	0	0	0	0.059253	2	3503	3503;3527		113.41	41.534	1	4994000			15641	3630	12723	12744	17348;17349	17348					-0.04388870384286747
HEDPVIAVF	9	Unmodified	_HEDPVIAVF_					0	0	0		ENSG00000103148|ENST00000611875|NPRL3	ENSG00000103148|ENST00000611875|NPRL3	ENSG00000103148|ENST00000611875|NPRL3	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.7670288085938	2	513.766374	1025.5182	-1.0328	-0.00053062	-2.7505	-0.0014131	-3.7833	-0.0019437	513.7645852646701	45.799	1.766	42.76	42.281	44.047	-3.0385					83	33	4	0	0	0	0.61208	1	2369	2369		30.504	0.18592	1	223630			15642	2285	12724	12745	17350	17350					0.006457675518731776
HEDPVIAVF	9	Unmodified	_HEDPVIAVF_					0	0	0		ENSG00000103148|ENST00000611875|NPRL3	ENSG00000103148|ENST00000611875|NPRL3	ENSG00000103148|ENST00000611875|NPRL3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	513.766374	1025.5182	-0.12105	-6.2193E-05	-3.906	-0.0020068	-4.027	-0.0020689	513.7641092770245	45.668	0.89955	42.958	42.747	43.646	-2.7097	0.09901	-0.00062368	NaN	30.504	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52072			15643	2285	12724	12745							0.006457675518731776
HEDQARLAL	9	Unmodified	_HEDQARLAL_					0	0	0			REV__nc|ENSG00000161558|Q96AN5-2|TMEM143	REV__nc|ENSG00000161558|Q96AN5-2|TMEM143	MULTI-MSMS	OvCa9_classI_Rep2	2	526.7771606445312	2	526.777805	1051.54106	-1.403	-0.00073905	0.93347	0.00049173	-0.46949	-0.00024732	526.7781858568062	52.709	2.3292	49.895	49.492	51.822	-2.8139					109	46	4	0	0	0	0.31747	1	3557	3557		60.972	2.19	1	428250	+		15644	20700	12725	12746	17351	17351					0.0173478666936262
HEDQKFFGLL	10	Unmodified	_HEDQKFFGLL_					0	0	0			REV__ENSG00000280204|ENST00000641544|OR1S1	REV__ENSG00000280204|ENST00000641544|OR1S1	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.20245361328125	3	411.880267	1232.61897	0.31324	0.00012902	-1.5942	-0.00065662	-1.281	-0.0005276	411.87973638720723	51.846	0.45804	51.846	51.669	52.127	0					20	10	3	0	0	0	0.026826	1	4025	4025		36.447	9.3994	1	127340	+		15645	23659	12726	12747	17352	17352					0.01196799534773163
HEDRGPVL	8	Unmodified	_HEDRGPVL_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	OvCa99_classI_Rep5	1	461.7401428222656	2	461.740691	921.466829	-0.48758	-0.00022514	0.31529	0.00014558	-0.1723	-7.9556E-05	461.74071227881706	41.481	1.2174	41.481	41.195	42.412	0					47	27	4	0	0	0	0.53531	1	2592	2592		73.975	16.163	1	914120			15646	2891	12727	12748	17353	17353					0.002954435778519837
HEDSGSVHL	9	Unmodified	_HEDSGSVHL_					0	0	0		nc|ENSG00000188013|A8K0S8|MEIS3P2;nc|ENSG00000105419|Q99687-3|MEIS3;ENSG00000105419|ENST00000558555|MEIS3;ENST00000561204.5_1_19:47909736-47921444:-|nuORF;nc|ENSG00000105419|Q99687-2|MEIS3;nc|ENSG00000179277|A6NDR6|MEIS3P1	nc|ENSG00000188013|A8K0S8|MEIS3P2	nc|ENSG00000188013|A8K0S8|MEIS3P2	MULTI-MSMS	OvCa99_classI_Rep5	1	490.72442626953125	2	490.725238	979.435923	-0.56942	-0.00027943	0.26906	0.00013203	-0.30036	-0.00014739	490.72528584352415	40.549	1.2561	40.549	40.294	41.55	0					65	27	4	0	0	0	0.22961	1	2484	2484		71.296	5.4925	1	2891900			15647	2456	12728	12749	17354	17354					-0.054617545270275514
HEDTGHSL	8	Unmodified	_HEDTGHSL_					0	0	0		nc|ENSG00000093072|Q9NZK5-2|ADA2;ENSG00000093072|ENST00000399837|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	MULTI-MSMS	OvCa99_classI_Rep5	1	448.1987609863281	2	448.198856	894.383159	-0.20961	-9.3946E-05	0.063206	2.8329E-05	-0.1464	-6.5618E-05	448.1987486304092	28.403	0.59853	28.403	28.24	28.838	0					23	11	3	0	0	0	0.37872	1	922	922		92.191	15.344	1	328830			15648	1907	12729	12750	17355	17355					-0.06825712589863997
HEDVLSSRH	9	Unmodified	_HEDVLSSRH_					0	0	0			REV__nc|ENSG00000078674|Q15154-4|PCM1	REV__nc|ENSG00000078674|Q15154-4|PCM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.3070068359375	2	540.265062	1078.51557	0.76586	0.00041377	4.1956	0.0022668	4.9615	0.0026805	540.2669193711874	67.116	0.52107	67.116	66.816	67.337	0					17	12	2	0	0	0	0.027462	1	6264	6264		38.806	13.232	1	618440	+		15649	17027	12730	12751	17356	17356					-0.02054687853046744
HEDYIRQFL	9	Unmodified	_HEDYIRQFL_					0	0	0		ENSG00000106605|ENST00000265523|BLVRA;BLVRA|p.E139Dfs*12|1|0.1|ENSG00000106605|chr7:43800528-43800529|-/TGGCCCACTGCAATTTCTGCCTCCCAGGTTCT|frameshift_variant	ENSG00000106605|ENST00000265523|BLVRA	ENSG00000106605|ENST00000265523|BLVRA	MULTI-MSMS	OvCa99_classI_Rep5	1	610.8094482421875	2	610.806562	1219.59857	2.4543	0.0014991	0.56567	0.00034551	3.02	0.0018446	610.8061381888588	95.846	0.75851	95.846	95.495	96.253	0					59	17	6	0	0	0	0.22621	1	10472	10472		71.877	18.526	1	1481500			15650	2564	12731	12752	17357	17357					-0.0024437112506348058
HEEDRKDFL	9	Unmodified	_HEEDRKDFL_					0	0	0		NCOA3-EYA2|1|fusion;NCOA3-EYA2|5|fusion;NCOA3-EYA2|7|fusion;NCOA3-EYA2|3|fusion;nc|ENSG00000124151|Q9Y6Q9-3|NCOA3;NCOA3-EYA2|2|fusion;NCOA3-EYA2|6|fusion;NCOA3-EYA2|8|fusion;NCOA3-EYA2|4|fusion;ENSG00000124151|ENST00000371998|NCOA3;nc|ENSG00000124151|Q9Y6Q9-5|NCOA3;ENST00000497292.1_1_20:46255748-46257319:+|nuORF;nc|ENSG00000124151|Q9Y6Q9-2|NCOA3;NCOA3|p.Q1131*|1|0.13|ENSG00000124151|chr20:47647209-47647233|GACAATCACCATCTTTTAACTCTAT/-|frameshift_variant;nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	NCOA3-EYA2|1|fusion	NCOA3-EYA2|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	594.7860107421875	2	594.785827	1187.5571	-0.32729	-0.00019466	0.18933	0.00011261	-0.13796	-8.2054E-05	594.7857266345237	42.605	0.46677	42.605	42.372	42.839	0					26	10	3	0	0	0	0.29519	1	2760	2760		63.534	12.198	1	507550			15651	15423	12732	12753	17358	17358					-0.029175518843885584
HEEEAAALHL	10	Unmodified	_HEEEAAALHL_					0	0	0		ENST00000292779.3_1_22:21990725-21990812:+|nuORF	ENST00000292779.3_1_22:21990725-21990812:+|nuORF	ENST00000292779.3_1_22:21990725-21990812:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	560.2749633789062	2	560.275095	1118.53564	0.23753	0.00013308	0.22337	0.00012515	0.4609	0.00025823	560.2751293232092	105.96	2.1264	105.52	105.15	107.27	-0.43642					121	42	5	0	0	0	0.66721	1	9874	9874		34.173	5.023	1	1293000			15652	10104	12733	12754	17359	17359					-0.018889369131102285
HEEEISTL	8	Unmodified	_HEEEISTL_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;ENST00000468880.1_1_17:39680334-39681232:-|nuORF	CON__P08727	CON__P08727	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.2308044433594	2	479.229822	956.445091	-0.24767	-0.00011869	0.018225	8.7338E-06	-0.22944	-0.00010996	479.2297470505231	66.448	2.2559	62.958	62.66	64.916	-3.4902					120	45	4	0	0	0	0.12128	2	4832	4832;4845		138.48	35.135	1	947770		+	15653	625	12734	12755	17360;17361	17360					-0.03487405961368495
HEEEISTL	8	Unmodified	_HEEEISTL_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;ENST00000468880.1_1_17:39680334-39681232:-|nuORF	CON__P08727	CON__P08727	MULTI-MATCH	OvCa9_classI_Rep2	2		2	479.229822	956.445091	0.83205	0.00039874	-1.0668	-0.00051126	-0.2348	-0.00011252	479.2292373472961	65.843	2.4462	63.148	62.262	64.708	-2.6958	0.094903	-0.0006911	NaN	138.48	110	48	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199030		+	15654	625	12734	12755							-0.03487405961368495
HEEELLML	8	Unmodified	_HEEELLML_					0	0	0			REV__nc|ENSG00000136813|Q5VYK3|ECPAS	REV__nc|ENSG00000136813|Q5VYK3|ECPAS	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.3188171386719	2	507.252243	1012.48993	-0.47391	-0.00024039	3.8895	0.0019729	3.4156	0.0017325	507.2541258205164	33.657	0.43732	33.657	33.483	33.921	0					20	8	3	0	0	0	0.028476	1	1559	1559		35.201	0	1	514280	+		15655	19404	12735	12756	17362	17362					-0.01581298419682753
HEEFKLYE	8	Unmodified	_HEEFKLYE_					0	0	0		NUCB1|p.R178L|1|0.05|ENSG00000104805|chr19:48913063-48913063|G/T|missense_variant	NUCB1|p.R178L|1|0.05|ENSG00000104805|chr19:48913063-48913063|G/T|missense_variant	NUCB1|p.R178L|1|0.05|ENSG00000104805|chr19:48913063-48913063|G/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	546.80712890625	2	547.761289	1093.50803	-0.48432	-0.00026529	-0.39833	-0.00021819	-0.88265	-0.00048348	547.7612831402591	57.526	0.7944	54.734	54.328	55.122	-2.792					30	15	3	0	0	0	0.028476	1	4153	4153		55.504	0	1	18568			15656	15443	12736	12757	17363	17363					-0.03498840173347162
HEEIIKVYL	9	Unmodified	_HEEIIKVYL_					0	0	0		ENST00000461859.1_1_1:151535003-151537177:+|nuORF;nc|ENSG00000143367|Q9NNX1-2|TUFT1;ENSG00000143367|ENST00000368849|TUFT1	ENST00000461859.1_1_1:151535003-151537177:+|nuORF	ENST00000461859.1_1_1:151535003-151537177:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	572.3264770507812	2	572.324057	1142.63356	2.2471	0.0012861	-0.2029	-0.00011613	2.0442	0.00117	572.3237439250273	91.671	1.143	91.671	91.372	92.515	0					58	26	3	0	0	0	0.029147	3	9874	9874;9901;9938		136.27	51.353	1	5053700			15657	5041	12737	12758	17364;17365;17366	17364					0.06794871682905068
HEEKGALLLL	10	Unmodified	_HEEKGALLLL_					0	0	0			REV__ENST00000397528.8_1_14:23284579-23285048:-|nuORF	REV__ENST00000397528.8_1_14:23284579-23285048:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	561.8274536132812	2	561.829506	1121.64446	-0.10313	-5.7942E-05	-2.3201	-0.0013035	-2.4232	-0.0013614	561.8279666547884	25.624	0.40123	25.624	25.392	25.793	0					14	7	3	0	0	0	0.71173	1	596	596		29.17	2.4771	1	51414	+		15658	24137	12738	12759	17367	17367					0.08850274057203933
HEENISSKM	9	Unmodified	_HEENISSKM_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	OvCa99_classI_Rep5	1	537.7484741210938	2	537.747856	1073.48116	-0.4785	-0.00025731	0.46791	0.00025162	-0.010591	-5.6954E-06	537.7479944712987	36.007	0.90971	36.007	35.753	36.662	0					32	19	2	0	0	0	0.066171	1	1860	1860		109.44	37.561	1	974540			15659	8736	12739	12760	17368	17368					-0.05264272056160735
HEEQLDHIE	9	Unmodified	_HEEQLDHIE_					0	0	0			REV__nc|ENSG00000101350|O15066-2|KIF3B	REV__nc|ENSG00000101350|O15066-2|KIF3B	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.2628784179688	2	575.262185	1148.50982	-2.3996	-0.0013804	2.1707	0.0012487	-0.2289	-0.00013168	575.2633406601402	49.725	1.8027	46.583	46.301	48.104	-3.1416					86	34	4	0	0	0	0.11471	1	2837	2837		93.195	13.744	1	385020	+		15660	17493	12740	12761	17369	17369					-0.05849831155387619
HEEQLDHIE	9	Unmodified	_HEEQLDHIE_					0	0	0			REV__nc|ENSG00000101350|O15066-2|KIF3B	REV__nc|ENSG00000101350|O15066-2|KIF3B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	575.262185	1148.50982	-1.7397	-0.0010008	1.4927	0.00085867	-0.24704	-0.00014211	575.2628723569985	49.456	1.0903	46.695	46.424	47.514	-2.7603	0.05603	-0.00062974	NaN	93.195	48	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88805	+		15661	17493	12740	12761							-0.05849831155387619
HEESREYSL	9	Unmodified	_HEESREYSL_					0	0	0		RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.T5031Rfs*29|1|0.06|ENSG00000173821|chr17:80389261-80389262|-/TCGG|frameshift_variant;RNF213|p.G5057Vfs*8|1|0.18|ENSG00000173821|chr17:80389340-80389340|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.N2986Tfs*32|1|0.9|ENSG00000173821|chr17:80347289-80347289|G/-|frameshift_variant;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	575.2622680664062	2	575.262185	1148.50982	-1.4773	-0.00084983	0.89985	0.00051765	-0.57745	-0.00033218	575.2626742367048	43.932	1.5938	43.932	43.651	45.245	0					75	35	5	0	0	0	0.043101	2	2944	2921;2944		124.08	47.306	1	6183700			15662	7416;32788	12741	12762	17370;17371	17371					-0.05849831155364882
HEESREYSL	9	Unmodified	_HEESREYSL_					0	0	0		RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.T5031Rfs*29|1|0.06|ENSG00000173821|chr17:80389261-80389262|-/TCGG|frameshift_variant;RNF213|p.G5057Vfs*8|1|0.18|ENSG00000173821|chr17:80389340-80389340|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.N2986Tfs*32|1|0.9|ENSG00000173821|chr17:80347289-80347289|G/-|frameshift_variant;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.2637329101562	2	575.262185	1148.50982	-2.3996	-0.0013804	2.1707	0.0012487	-0.2289	-0.00013168	575.2633406601402	49.725	1.8027	46.583	46.301	48.104	-3.1416					86	34	4	0	0	0	0.1149	1	2825	2825		93.143	21.266	1	385020			15663	7416;32788	12741	12762	17372	17372					-0.05849831155364882
HEEYNIGVL	9	Unmodified	_HEEYNIGVL_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.2689208984375	2	537.266739	1072.51892	-1.2566	-0.00067512	1.3371	0.00071839	0.08054	4.3271E-05	537.267109567809	63.031	1.5936	59.556	59.044	60.637	-3.475					80	32	4	0	0	0	0.35444	1	4421	4421		56.721	5.3856	1	350290			15664	5894	12742	12763	17373	17373					-0.014434377990482972
HEEYNIGVL	9	Unmodified	_HEEYNIGVL_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-MATCH	OvCa9_classI_Rep2	2		2	537.266739	1072.51892	-2.4685	-0.0013262	2.4569	0.00132	-0.011563	-6.2126E-06	537.2680484622006	62.245	2.3691	59.486	58.882	61.251	-2.7593	-0.035109	0.00045852	NaN	56.721	93	45	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136600			15665	5894	12742	12763							-0.014434377990482972
HEFGHVLGL	9	Unmodified	_HEFGHVLGL_					0	0	0		chr22:23779368-23780359|404|73.22|0.78|6.56|+|ENST00000437086|MMP11,MMP11;ENST00000465385.5_1_22:24122222-24125728:+|nuORF;ENSG00000099953|ENST00000215743|MMP11;MMP9|p.A406V|1|0.44|ENSG00000100985|chr20:46012469-46012469|C/T|missense_variant;tr|A0A553SSG7|A0A553SSG7_NIACIPeptidaseM10metallopeptidasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03040PE=4SV=1	chr22:23779368-23780359|404|73.22|0.78|6.56|+|ENST00000437086|MMP11,MMP11	chr22:23779368-23780359|404|73.22|0.78|6.56|+|ENST00000437086|MMP11,MMP11	MULTI-MSMS	OvCa99_classI_Rep5	1	504.7666931152344	2	504.766709	1007.51886	2.403	0.0012129	0.25059	0.00012649	2.6536	0.0013394	504.7667278511493	86.173	2.3009	86.173	85.87	88.171	0					92	55	4	0	0	0	0.027215	2	9066	9066;9094		138.48	78.186	1	9506800			15666	465	12743	12764	17374;17375	17374					0.015406069916139131
HEFHSPAL	8	Unmodified	_HEFHSPAL_					0	0	0		ENSG00000013016|ENST00000322054|EHD3;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENST00000569223.1_1_15:42235208-42264692:-|nuORF;ENSG00000103966|ENST00000220325|EHD4;EHD4|p.A361Rfs*7|1|0.08|ENSG00000103966|chr15:41909707-41909708|-/G|frameshift_variant	ENSG00000013016|ENST00000322054|EHD3;ENSG00000103966|ENST00000220325|EHD4	ENSG00000013016|ENST00000322054|EHD3	MULTI-MSMS	OvCa99_classI_Rep5	1	469.2312927246094	2	469.229959	936.445365	-0.3001	-0.00014082	0.37447	0.00017571	0.074366	3.4895E-05	469.2299543666475	55.66	2.202	55.66	55.107	57.309	0					123	52	7	0	0	0	0.14363	2	4559	4559;4591		134.12	54.668	1	3584900			15667	979;2345	12744	12765	17376;17377	17376					-0.025399414508569862
HEFKSNEL	8	Unmodified	_HEFKSNEL_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	OvCa99_classI_Rep5	1	502.2452697753906	2	502.245806	1002.47706	-0.82068	-0.00041218	0.40716	0.0002045	-0.41352	-0.00020769	502.24583679845307	41.949	1.2026	41.949	41.724	42.926	0					37	27	2	0	0	0	0.36941	1	2657	2657		94.006	5.3636	1	1161500			15668	3633	12745	12766	17378	17378					-0.024079934875658182
HEFMLALD	8	Unmodified	_HEFMLALD_					0	0	0		SLC9C1|p.S360Mfs*11|1|0.05|ENSG00000172139|chr3:112263042-112263043|-/A|frameshift_variant	SLC9C1|p.S360Mfs*11|1|0.05|ENSG00000172139|chr3:112263042-112263043|-/A|frameshift_variant	SLC9C1|p.S360Mfs*11|1|0.05|ENSG00000172139|chr3:112263042-112263043|-/A|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.79376220703125	2	488.233853	974.453153	-0.48025	-0.00023448	3.2922	0.0016074	2.8119	0.0013729	488.23583655345504	54.086	0.16378	54.086	54.008	54.172	0					8	3	3	0	0	0	0.028476	1	4337	4337		33.516	5.6333	1	53125			15669	32836	12746	12767	17379	17379					-0.035095502455988026
HEFSREPSL	9	Unmodified	_HEFSREPSL_					0	0	0		ENSG00000179632|ENST00000322428|MAF1	ENSG00000179632|ENST00000322428|MAF1	ENSG00000179632|ENST00000322428|MAF1	MULTI-MSMS	OvCa99_classI_Rep5	1	551.2709350585938	2	551.269813	1100.52507	-0.38705	-0.00021337	0.10117	5.5773E-05	-0.28588	-0.0001576	551.269797740704	56.316	0.95464	56.316	56.094	57.048	0					62	22	4	0	0	0	0.066102	1	4657	4657		109.48	43.049	1	3995300			15670	7837	12747	12768	17380	17380					-0.021169195675156516
HEFSYLYP	8	Unmodified	_HEFSYLYP_					0	0	0			REV__ENST00000352689.10_1_7:131180396-131180510:+|nuORF	REV__ENST00000352689.10_1_7:131180396-131180510:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.311279296875	2	528.245275	1054.476	1.3855	0.00073189	0.86747	0.00045824	2.253	0.0011901	528.2466856108354	122.98	0.37082	122.98	122.81	123.18	0					11	7	2	0	0	0	0.028476	1	14171	14171		37.028	13.986	1	53659	+		15671	24727	12748	12769	17381	17381					-0.049062078564929834
HEGDIILKI	9	Unmodified	_HEGDIILKI_					0	0	0		nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;TJP2|p.S1031Dfs*21|1|0.05|ENSG00000119139|chr9:69251132-69251133|-/TG|frameshift_variant;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	MULTI-MSMS	OvCa99_classI_Rep5	1	519.3048095703125	2	519.303124	1036.5917	1.3067	0.00067859	0.34535	0.00017934	1.6521	0.00085794	519.3034804404226	87.413	1.0359	87.413	87.135	88.171	0					49	24	3	0	0	0	0.019133	3	9248	9248;9278;9284		148.04	65.738	1	3281100			15672	3344	12749	12770	17382;17383;17384	17382					0.07486315994378856
HEGDIILKI	9	Unmodified	_HEGDIILKI_					0	0	0		nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;TJP2|p.S1031Dfs*21|1|0.05|ENSG00000119139|chr9:69251132-69251133|-/TG|frameshift_variant;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	MULTI-MSMS	OvCa9_classI_Rep2	2	519.3020629882812	2	519.303124	1036.5917	1.9095	0.00099163	-2.7954	-0.0014517	-0.88587	-0.00046004	519.30171214845	90.255	2.6185	88.953	88.482	91.101	-1.302					128	50	4	0	0	0	0.022645	9	7978	7961;7966;7972;7978;7985;7991;7997;8005;8011		143.89	72.591	1	1068200			15673	3344	12749	12770	17385;17386;17387;17388;17389;17390;17391;17392;17393	17388					0.07486315994378856
HEGDIILKI	9	Unmodified	_HEGDIILKI_					0	0	0		nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;TJP2|p.S1031Dfs*21|1|0.05|ENSG00000119139|chr9:69251132-69251133|-/TG|frameshift_variant;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	MULTI-MSMS	OvCa9_classI_Rep3	3	519.3033447265625	2	519.303124	1036.5917	-0.5404	-0.00028063	-0.54238	-0.00028166	-1.0828	-0.00056229	519.302873416406	91.091	2.4424	89.067	88.624	91.066	-2.0241					112	49	4	0	0	0	0.0094524	7	5707	5678;5682;5690;5695;5701;5707;5714		171.38	90.603	1	1294000			15674	3344	12749	12770	17394;17395;17396;17397;17398;17399;17400	17399					0.07486315994378856
HEGDIILKI	9	Unmodified	_HEGDIILKI_					0	0	0		nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;TJP2|p.S1031Dfs*21|1|0.05|ENSG00000119139|chr9:69251132-69251133|-/TG|frameshift_variant;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.3043823242188	2	519.303124	1036.5917	-0.86004	-0.00044662	0.0032587	1.6922E-06	-0.85678	-0.00044493	519.3031644688473	91.579	2.4709	89.036	88.553	91.024	-2.5425					132	48	4	0	0	0	0.014964	7	7934	7911;7923;7934;7946;7959;7972;7983		153.04	72.591	1	1237400			15675	3344	12749	12770	17401;17402;17403;17404;17405;17406;17407	17403					0.07486315994378856
HEGGPDSKL	9	Unmodified	_HEGGPDSKL_					0	0	0		ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L	ENSG00000116580|ENST00000368331|GON4L	ENSG00000116580|ENST00000368331|GON4L	MULTI-MSMS	OvCa99_classI_Rep5	1	470.2303771972656	2	470.230156	938.445759	0.18743	8.8137E-05	-0.60594	-0.00028493	-0.4185	-0.00019679	470.2298224337456	31.499	0.94258	31.499	31.311	32.254	0					44	18	4	0	0	0	0.074342	1	1296	1296		104.75	13.97	1	1094500			15676	3187	12750	12771	17408	17408					-0.025925665216618654
HEGKSFQL	8	Unmodified	_HEGKSFQL_					0	0	0		ENSG00000107551|ENST00000340258|RASSF4;ENST00000489171.5_1_10:45466954-45488774:+|nuORF;ENST00000462822.1_1_10:45465650-45477981:+|nuORF;nc|ENSG00000107551|Q9H2L5-4|RASSF4	ENSG00000107551|ENST00000340258|RASSF4	ENSG00000107551|ENST00000340258|RASSF4	MULTI-MSMS	OvCa99_classI_Rep5	1	473.2425231933594	2	473.243067	944.47158	-0.20957	-9.9178E-05	0.1073	5.078E-05	-0.10227	-4.8397E-05	473.24301891002347	47.733	1.5116	47.733	47.251	48.762	0					91	34	4	0	0	0	0.58851	1	3445	3445		66.429	16.405	1	6369100			15677	2603	12751	12772	17409	17409					-0.0028767227937578355
HEGKSFQL	8	Unmodified	_HEGKSFQL_					0	0	0		ENSG00000107551|ENST00000340258|RASSF4;ENST00000489171.5_1_10:45466954-45488774:+|nuORF;ENST00000462822.1_1_10:45465650-45477981:+|nuORF;nc|ENSG00000107551|Q9H2L5-4|RASSF4	ENSG00000107551|ENST00000340258|RASSF4	ENSG00000107551|ENST00000340258|RASSF4	MULTI-MSMS	OvCa9_classI_Rep2	2	473.24200439453125	2	473.243067	944.47158	-1.2197	-0.00057723	1.2228	0.00057867	0.0030476	1.4423E-06	473.24345691842643	53.714	1.8932	50.9	50.479	52.372	-2.8139					103	37	4	0	0	0	0.65062	1	3647	3647		53.351	5.4358	1	437470			15678	2603	12751	12772	17410	17410					-0.0028767227937578355
HEGKSFQL	8	Unmodified	_HEGKSFQL_					0	0	0		ENSG00000107551|ENST00000340258|RASSF4;ENST00000489171.5_1_10:45466954-45488774:+|nuORF;ENST00000462822.1_1_10:45465650-45477981:+|nuORF;nc|ENSG00000107551|Q9H2L5-4|RASSF4	ENSG00000107551|ENST00000340258|RASSF4	ENSG00000107551|ENST00000340258|RASSF4	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.24420166015625	2	473.243067	944.47158	-0.24925	-0.00011796	0.41719	0.00019743	0.16794	7.9475E-05	473.2430688770203	54.03	2.1453	50.783	50.314	52.459	-3.2474					111	41	4	0	0	0	0.57734	1	3316	3316		68.787	10.976	1	1113400			15679	2603	12751	12772	17411	17411					-0.0028767227937578355
HEGLVLTKL	9	Unmodified	_HEGLVLTKL_					0	0	0		ENSG00000149932|ENST00000279396|TMEM219	ENSG00000149932|ENST00000279396|TMEM219	ENSG00000149932|ENST00000279396|TMEM219	MULTI-MSMS	OvCa99_classI_Rep5	1	505.3066711425781	2	505.305667	1008.59678	2.064	0.001043	-0.075328	-3.8063E-05	1.9887	0.0010049	505.3054946979653	76.778	0.72295	76.778	76.238	76.961	0					42	17	4	0	0	0	0.0094273	1	7710	7710		171.53	46.938	1	3463900			15680	5494	12752	12773	17412	17412					0.09282619856969632
HEGRVIHSSF	10	Unmodified	_HEGRVIHSSF_					0	0	0			REV__nc|ENSG00000030419|Q9UKS7-8|IKZF2	REV__nc|ENSG00000030419|Q9UKS7-8|IKZF2	MULTI-MSMS	OvCa99_classI_Rep5	1	584.8001708984375	2	584.796529	1167.5785	0.92074	0.00053844	3.9957	0.0023367	4.9165	0.0028751	584.7985340971206	142.99	1.9613	142.99	142.64	144.6	0					107	39	5	0	0	0	0.50999	1	16706	16706		52.937	5.2794	1	514620	+		15681	16585	12753	12774	17413	17413					0.0014187793499331747
HEGTFEAIQL	10	Unmodified	_HEGTFEAIQL_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	MULTI-MSMS	OvCa9_classI_Rep3	3	572.7845458984375	2	572.785296	1143.55604	-0.72166	-0.00041335	0.096967	5.5542E-05	-0.62469	-0.00035781	572.7852042394844	102.79	2.8693	101.27	100.58	103.45	-1.5211					127	54	3	0	0	0	0.35465	3	7097	7091;7097;7103		74.255	11.947	1	1330700			15682	4957	12754	12775	17414;17415;17416	17415					-0.009997662532896356
HEGTFEAIQL	10	Unmodified	_HEGTFEAIQL_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	MULTI-MSMS	OvCa9_classI_Rep4_	4	572.7866821289062	2	572.785296	1143.55604	-0.7014	-0.00040175	0.26416	0.00015131	-0.43724	-0.00025045	572.7852955228963	103.46	2.3476	101.32	100.63	102.98	-2.1388					117	43	3	0	0	0	0.28845	1	9340	9340		82.241	4.9229	1	1167800			15683	4957	12754	12775	17417	17417					-0.009997662532896356
HEGVSWFVP	9	Unmodified	_HEGVSWFVP_					0	0	0		nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1;CCT7-ALMS1|1|fusion;ENST00000450720.5_1_2:73899456-73899975:+|nuORF	nc|ENSG00000116127|Q8TCU4-2|ALMS1	nc|ENSG00000116127|Q8TCU4-2|ALMS1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.3436279296875	2	529.258717	1056.50288	0.45382	0.00024019	3.0596	0.0016193	3.5134	0.0018595	529.2602590418965	139.46	1.1735	137.97	137.73	138.91	-1.4952					35	22	2	0	0	0	0.027462	1	13629	13629		31.955	0	1	76874			15684	3155	12755	12776	17418	17418					-0.023110992452984647
HEHDGHLYL	9	Unmodified	_HEHDGHLYL_					0	0	0		ENSG00000101474|ENST00000217456|APMAP	ENSG00000101474|ENST00000217456|APMAP	ENSG00000101474|ENST00000217456|APMAP	MULTI-MSMS	OvCa99_classI_Rep5	1	560.761962890625	2	560.762155	1119.50976	1.1069	0.00062071	-1.3906	-0.00077979	-0.2837	-0.00015909	560.7612558984366	45.566	1.2996	45.566	45.245	46.545	0					60	29	3	0	0	0	0.048552	1	3164	3164		119.56	58.585	1	2078900			15685	2183	12756	12777	17419	17419					-0.04521786364739455
HEHEQENEL	9	Unmodified	_HEHEQENEL_					0	0	0		ENSG00000135090|ENST00000392533|TAOK3	ENSG00000135090|ENST00000392533|TAOK3	ENSG00000135090|ENST00000392533|TAOK3	MULTI-MSMS	OvCa99_classI_Rep5	1	582.7491455078125	2	582.749441	1163.48433	-0.36147	-0.00021064	0.0030318	1.7668E-06	-0.35843	-0.00020888	582.7492645369116	30.756	0.58924	30.756	30.582	31.171	0					25	11	4	0	0	0	0.3249	1	1211	1211		60.118	16.001	1	348470			15686	4353	12757	12778	17420	17420					-0.0908730567780367
HEHIEILTV	9	Unmodified	_HEHIEILTV_					0	0	0		ENST00000487133.1_1_X:119739298-119742228:+|nuORF;nc|ENSG00000232119|Q9ULC4-2|MCTS1;ENSG00000232119|ENST00000371317|MCTS1;nc|ENSG00000232119|Q9ULC4-3|MCTS1	ENST00000487133.1_1_X:119739298-119742228:+|nuORF	ENST00000487133.1_1_X:119739298-119742228:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	545.7960815429688	2	545.798206	1089.58186	1.3428	0.00073288	-0.065128	-3.5547E-05	1.2776	0.00069733	545.7971776521719	87.492	2.9596	86.061	85.741	88.701	-1.4311					130	59	5	0	0	0	0.037627	6	7627	7627;7631;7637;7643;7657;7663		128.86	38.491	1	690390			15687	9292	12758	12779	17421;17422;17423;17424;17425;17426	17421					0.04065127988974382
HEHIEILTV	9	Unmodified	_HEHIEILTV_					0	0	0		ENST00000487133.1_1_X:119739298-119742228:+|nuORF;nc|ENSG00000232119|Q9ULC4-2|MCTS1;ENSG00000232119|ENST00000371317|MCTS1;nc|ENSG00000232119|Q9ULC4-3|MCTS1	ENST00000487133.1_1_X:119739298-119742228:+|nuORF	ENST00000487133.1_1_X:119739298-119742228:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	545.7965698242188	2	545.798206	1089.58186	-0.72872	-0.00039774	2.4827	0.0013551	1.754	0.00095733	545.7982663676476	88.421	2.9172	86.29	85.906	88.823	-2.1309					132	57	5	0	0	0	0.12365	4	5384	5371;5377;5384;5394		90.777	15.876	1	1130600			15688	9292	12758	12779	17427;17428;17429;17430	17429					0.04065127988974382
HEHIEILTV	9	Unmodified	_HEHIEILTV_					0	0	0		ENST00000487133.1_1_X:119739298-119742228:+|nuORF;nc|ENSG00000232119|Q9ULC4-2|MCTS1;ENSG00000232119|ENST00000371317|MCTS1;nc|ENSG00000232119|Q9ULC4-3|MCTS1	ENST00000487133.1_1_X:119739298-119742228:+|nuORF	ENST00000487133.1_1_X:119739298-119742228:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.7976684570312	2	545.798206	1089.58186	-1.0542	-0.00057539	3.2345	0.0017654	2.1803	0.00119	545.798354390061	88.91	2.8172	86.307	85.882	88.7	-2.6027					128	55	5	0	0	0	0.16524	2	7609	7609;7648		82.305	3.4775	1	806000			15689	9292	12758	12779	17431;17432	17431					0.04065127988974382
HEHLLPIFC	9	Unmodified	_HEHLLPIFC_					0	0	0		nc|ENSG00000112706|Q17R60-2|IMPG1	nc|ENSG00000112706|Q17R60-2|IMPG1	nc|ENSG00000112706|Q17R60-2|IMPG1	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.7678833007812	2	554.784044	1107.55354	-0.096749	-5.3675E-05	-2.1201	-0.0011762	-2.2169	-0.0012299	554.7829782481836	60.424	1.375	60.424	59.957	61.332	0					47	32	2	0	0	0	0.027462	1	5315	5315		50.025	2.1089	1	745770			15690	14963	12759	12780	17433	17433					0.004061068080773111
HEHQANLL	8	Unmodified	_HEHQANLL_					0	0	0		nc|ENSG00000116560|P23246-2|SFPQ;ENSG00000116560|ENST00000357214|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	nc|ENSG00000116560|P23246-2|SFPQ	MULTI-MSMS	OvCa99_classI_Rep5	1	481.2458801269531	2	481.246141	960.477728	-0.19962	-9.6068E-05	0.0037857	1.8219E-06	-0.19584	-9.4246E-05	481.2460469312419	40.775	1.5387	40.775	40.573	42.111	0					88	34	4	0	0	0	0.17036	1	2495	2495		129.68	26.909	1	3637300			15691	3186	12760	12781	17434	17434					-0.0040915404786119325
HEHTEPVSL	9	Unmodified	_HEHTEPVSL_					0	0	0		VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant;nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;VCAN|p.Q2143Kfs*20|1|0.07|ENSG00000038427|chr5:83539428-83539429|-/AAAAAGAAGAA|frameshift_variant;VCAN|p.G2239Afs*2|1|0.05|ENSG00000038427|chr5:83539715-83539715|A/-|frameshift_variant;ENST00000513016.5_1_5:82832752-82876250:+|nuORF	VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant	VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	524.7581176757812	2	524.756538	1047.49852	-1.0757	-0.0005645	0.27282	0.00014316	-0.80291	-0.00042133	524.7566850955013	49.529	2.299	49.529	49.245	51.544	0					157	52	5	0	0	0	0.031958	4	3706	3684;3706;3730;3798		133.81	48.897	1	39546000			15692	1099	12761	12782	17435;17436;17437;17438	17436					-0.023326084588461526
HEHVDKESAA	10	Unmodified	_HEHVDKESAA_					0	0	0		ENST00000369893.9_1_10:104488214-104489532:+|nuORF	ENST00000369893.9_1_10:104488214-104489532:+|nuORF	ENST00000369893.9_1_10:104488214-104489532:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	561.7626953125	2	561.762352	1121.51015	-0.033033	-1.8557E-05	-0.082719	-4.6468E-05	-0.11575	-6.5025E-05	561.7622591606893	25.217	0.95267	25.217	24.99	25.943	0					49	18	5	0	0	0	0.49558	1	556	556		54.776	3.4409	1	1273100			15693	10908	12762	12783	17439	17439					-0.04574411435510228
HEIAHNAAF	9	Unmodified	_HEIAHNAAF_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	OvCa99_classI_Rep5	1	505.2464599609375	2	505.246141	1008.47773	-0.37817	-0.00019107	-0.017921	-9.0547E-06	-0.39609	-0.00020012	505.2459982426567	44.644	1.2717	44.644	44.396	45.667	0					81	28	5	0	0	0	0.045281	2	3035	3035;3062		122.18	22.801	1	3102200			15694	5090	12763	12784	17440;17441	17440					-0.02617154047868553
HEIEALKSF	9	Unmodified	_HEIEALKSF_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.2862548828125	2	537.284931	1072.55531	-0.95088	-0.00051089	0.43653	0.00023454	-0.51435	-0.00027635	537.2849581096708	76.109	1.528	73.17	72.741	74.269	-2.9389					85	31	4	0	0	0	0.1243	1	6034	6034		90.601	26.394	1	355100			15695	1595	12764	12785	17442	17442					0.021934390976412033
HEIEALKSF	9	Unmodified	_HEIEALKSF_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MATCH	OvCa9_classI_Rep2	2		2	537.284931	1072.55531	-1.3503	-0.00072547	0.8806	0.00047313	-0.46965	-0.00025234	537.2852585539231	75.07	1.6567	73.099	72.481	74.138	-1.9711	-0.035356	0.00019309	NaN	90.601	86	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276440			15696	1595	12764	12785							0.021934390976412033
HEIEKVNK	8	Unmodified	_HEIEKVNK_					0	0	0			REV__KIF3C|p.S409Tfs*16|1|0.02|ENSG00000084731|chr2:25980692-25980693|-/ATTG|frameshift_variant	REV__KIF3C|p.S409Tfs*16|1|0.02|ENSG00000084731|chr2:25980692-25980693|-/ATTG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	498.77655029296875	2	498.777274	995.539994	0.12984	6.4761E-05	-1.137	-0.00056709	-1.0071	-0.00050233	498.7769421981592	66.393	2.4261	63.697	63.022	65.448	-2.6958					108	48	3	0	0	0	0.38598	2	5163	5152;5163		90.777	1.2932	1	599630	+		15697	17126	12765	12786	17443;17444	17444					0.04204572300466225
HEIESLYTKL	10	Unmodified	_HEIESLYTKL_					0	0	0		nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-4|WNK1;ENST00000542424.1_1_12:1005827-1009868:+|nuORF	nc|ENSG00000060237|Q9H4A3-5|WNK1	nc|ENSG00000060237|Q9H4A3-5|WNK1	MULTI-MSMS	OvCa99_classI_Rep5	1	616.8307495117188	2	616.829703	1231.64485	0.56227	0.00034682	1.7924	0.0011056	2.3547	0.0014525	616.8306506323905	81.228	0.86462	81.228	80.949	81.814	0					54	20	3	0	0	0	0.017847	1	8366	8366		150.36	83.4	1	1748500			15698	14880	12766	12787	17445	17445					0.03829648986379652
HEIHDPQHL	9	Unmodified	_HEIHDPQHL_					0	0	0		nc|ENSG00000122482|Q9H582-2|ZNF644;ENSG00000122482|ENST00000337393|ZNF644	nc|ENSG00000122482|Q9H582-2|ZNF644	nc|ENSG00000122482|Q9H582-2|ZNF644	MULTI-MSMS	OvCa99_classI_Rep5	1	563.2758178710938	2	563.275429	1124.53631	-0.31988	-0.00018018	0.34952	0.00019687	0.029638	1.6694E-05	563.2755579479706	36.377	0.54057	36.377	36.211	36.751	0					26	11	3	0	0	0	0.022645	1	1916	1916		143.89	50.744	1	368600			15699	3534	12767	12788	17446	17446					-0.020980974733902258
HEIKSLEDL	9	Unmodified	_HEIKSLEDL_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1;STAT1|p.P251Afs*28|1|0.05|ENSG00000115415|chr2:190997890-190997891|-/C|frameshift_variant	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	OvCa99_classI_Rep5	1	542.2890625	2	542.287671	1082.56079	-0.085108	-4.6153E-05	-0.1326	-7.191E-05	-0.21771	-0.00011806	542.2874748734855	71.087	3.0308	71.087	70.761	73.792	0					171	75	4	0	0	0	0.024645	2	6862	6835;6862		141.52	39.92	1	36725000			15700	3094	12768	12789	17447;17448	17448					0.02281117889469897
HEILDGFTT	9	Unmodified	_HEILDGFTT_					0	0	0		tr|A0A7D6W0K3|A0A7D6W0K3_9CLOTATP-dependenthelicase/deoxyribonucleasesubunitBOS=ClostridiumintestinaleOX=36845GN=addBPE=3SV=1	tr|A0A7D6W0K3|A0A7D6W0K3_9CLOTATP-dependenthelicase/deoxyribonucleasesubunitBOS=ClostridiumintestinaleOX=36845GN=addBPE=3SV=1	tr|A0A7D6W0K3|A0A7D6W0K3_9CLOTATP-dependenthelicase/deoxyribonucleasesubunitBOS=ClostridiumintestinaleOX=36845GN=addBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2810668945312	2	516.753464	1031.49238	-0.17874	-9.2366E-05	-0.9564	-0.00049422	-1.1351	-0.00058659	516.7528659555323	72.859	0.3901	72.859	72.684	73.074	0					15	9	2	0	0	0	0.027462	1	7134	7134		37.159	0	1	300190			15701	35379	12769	12790	17449	17449					-0.022111266903721116
HEILRAKVY	9	Unmodified	_HEILRAKVY_					0	0	0			REV__ENSG00000147117|ENST00000377073|ZNF157	REV__ENSG00000147117|ENST00000377073|ZNF157	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.7894287109375	2	564.82984	1127.64513	0.57138	0.00032273	-0.026286	-1.4847E-05	0.54509	0.00030788	564.8291418456458	51.423	0.75334	48.249	47.922	48.676	-3.1734					20	14	2	0	0	0	0.027462	1	3037	3037		29.15	0	1	27112	+		15702	20043	12770	12791	17450	17450					0.08641113496878461
HEIQIMKKLNH	11	Oxidation (M)	_HEIQIM(Oxidation (M))KKLNH_		HEIQIM(1)KKLNH		HEIQIM(69)KKLNH	0	0	1		CHUK|p.E429Lfs*10|1|0.33|ENSG00000213341|chr10:100205137-100205147|GCACTGCTTCA/-|frameshift_variant;ENSG00000213341|ENST00000370397|CHUK	CHUK|p.E429Lfs*10|1|0.33|ENSG00000213341|chr10:100205137-100205147|GCACTGCTTCA/-|frameshift_variant	CHUK|p.E429Lfs*10|1|0.33|ENSG00000213341|chr10:100205137-100205147|GCACTGCTTCA/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	469.59375	3	469.590611	1405.75	-0.27722	-0.00013018	4.3085	0.0020232	4.0312	0.001893	469.5927070200878	48.629	2.875	48.629	48.332	51.207	0					171	65	5	0	0	0	0.29709	1	3562	3562		68.626	13.542	1	21838000			15703	578	12771	12792	17451	17451		14			0.06335866911149424
HEIRNPLTGI	10	Unmodified	_HEIRNPLTGI_					0	0	0		tr|A0A553SPI2|A0A553SPI2_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26400PE=4SV=1	tr|A0A553SPI2|A0A553SPI2_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26400PE=4SV=1	tr|A0A553SPI2|A0A553SPI2_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26400PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	575.3250732421875	2	575.32238	1148.63021	-1.5093	-0.00086834	0.69284	0.0003986	-0.81648	-0.00046974	575.3226304518038	64.027	1.0615	64.027	63.773	64.834	0					80	25	4	0	0	0	0.12182	1	5791	5791		108.09	4.0307	1	6675300			15704	34049	12772	12793	17452	17452					0.06183621628883884
HEIRNPVI	8	Unmodified	_HEIRNPVI_					0	0	0		ENSG00000142661|ENST00000374434|MYOM3;nc|ENSG00000142661|Q5VTT5-2|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	MULTI-MSMS	OvCa99_classI_Rep5	1	489.28094482421875	2	489.279983	976.545414	-0.84122	-0.00041159	0.53042	0.00025952	-0.3108	-0.00015207	489.28011614418386	59.284	0.86842	59.284	59.011	59.879	0					72	22	4	0	0	0	0.59148	1	5167	5167		65.803	7.9919	1	10996000			15705	4988	12773	12794	17453	17453					0.05620295882943083
HEITITKTI	9	Unmodified	_HEITITKTI_					0	0	0			REV__tr|A0A553SK81|A0A553SK81_NIACIVWAdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18295PE=4SV=1	REV__tr|A0A553SK81|A0A553SK81_NIACIVWAdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18295PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.8603515625	2	528.308406	1054.60226	2.5062	0.001324	1.1301	0.00059704	3.6363	0.0019211	528.308738306785	94.213	0.72575	94.213	93.964	94.69	0					46	16	4	0	0	0	0.027447	1	10295	10295		39.253	0	1	5715700	+		15706	30092	12774	12795	17454	17454					0.07714298648807016
HEKCKLTS	8	Unmodified	_HEKCKLTS_					0	0	0			REV__ENST00000522590.1_1_6:154480965-154534056:-|nuORF	REV__ENST00000522590.1_1_6:154480965-154534056:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	473.243896484375	2	473.244752	944.474951	-0.20957	-9.9178E-05	-3.4541	-0.0016346	-3.6637	-0.0017338	473.24301891002347	47.733	1.5116	47.733	47.251	48.762	0					91	34	4	0	0	0	0.66704	1	3466	3466		50.025	0	1	6369100	+		15707	16952	12775	12796	17455	17455					0.0004925450296013878
HEKCKLTS	8	Unmodified	_HEKCKLTS_					0	0	0			REV__ENST00000522590.1_1_6:154480965-154534056:-|nuORF	REV__ENST00000522590.1_1_6:154480965-154534056:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	473.24267578125	2	473.244752	944.474951	-1.2197	-0.00057723	-2.3386	-0.0011067	-3.5583	-0.001684	473.24345691842643	53.714	1.8932	50.9	50.479	52.372	-2.8139					103	37	4	0	0	0	0.66704	1	3653	3653		50.025	3.2581	1	437470	+		15708	16952	12775	12796	17456	17456					0.0004925450296013878
HEKDIKVFF	9	Unmodified	_HEKDIKVFF_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	OvCa9_classI_Rep4_	4	581.8171997070312	2	581.816399	1161.61824	-0.6755	-0.00039302	0.15759	9.1691E-05	-0.51791	-0.00030133	581.8164038850989	78.573	2.0471	75.809	74.974	77.021	-2.7638					118	42	4	0	0	0	0.2077	1	6329	6329		75.043	21.692	1	497500			15709	5651	12776	12797	17457	17457					0.04390004885704002
HEKDLIVVVV	10	Unmodified	_HEKDLIVVVV_					0	0	0			REV__ENSG00000116670|ENST00000376692|MAD2L2	REV__ENSG00000116670|ENST00000376692|MAD2L2	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8424682617188	2	575.845156	1149.67576	-4.018	-0.0023138	0.54994	0.00031668	-3.4681	-0.0019971	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.71192	1	12199	12199		29.15	0	1	445630	+		15710	18310	12777	12798	17458	17458					0.10690847091268552
HEKEKSYAL	9	Unmodified	_HEKEKSYAL_					0	0	0		ENST00000596372.1_1_19:58596054-58598820:-|nuORF;nc|ENSG00000121413|Q8TBC5-4|ZSCAN18;nc|ENSG00000121413|Q8TBC5-2|ZSCAN18;ENSG00000121413|ENST00000601144|ZSCAN18;nc|ENSG00000121413|Q8TBC5-3|ZSCAN18	ENST00000596372.1_1_19:58596054-58598820:-|nuORF	ENST00000596372.1_1_19:58596054-58598820:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	552.787841796875	2	552.787838	1103.56112	0.014953	8.2656E-06	-0.87347	-0.00048284	-0.85851	-0.00047458	552.7872668022684	32.279	0.74081	32.279	32.055	32.796	0					36	14	4	0	0	0	0.1804	1	1392	1392		79.713	11.228	1	922140			15711	3483	12778	12799	17459	17459					0.013485376093285595
HEKEKTFI	8	Unmodified	_HEKEKTFI_					0	0	0			REV__ENSG00000198825|ENST00000650623|INPP5F	REV__ENSG00000198825|ENST00000650623|INPP5F	MULTI-MSMS	OvCa99_classI_Rep5	1	516.2810668945312	2	516.279649	1030.54475	-0.34363	-0.00017741	0.028715	1.4825E-05	-0.31491	-0.00016258	516.2795617635463	72.982	0.43107	72.982	72.804	73.235	0					26	10	3	0	0	0	0.60331	1	7134	7134		63.306	3.188	1	3227600	+		15712	23069	12779	12800	17460	17460					0.030694564432451443
HEKFDIHIH	9	Unmodified	_HEKFDIHIH_					0	0	0		tr|A0A553SKA6|A0A553SKA6_NIACILonproteaseOS=NialliacirculansOX=1397GN=lonPE=2SV=1	tr|A0A553SKA6|A0A553SKA6_NIACILonproteaseOS=NialliacirculansOX=1397GN=lonPE=2SV=1	tr|A0A553SKA6|A0A553SKA6_NIACILonproteaseOS=NialliacirculansOX=1397GN=lonPE=2SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	588.8195190429688	2	588.301447	1174.58834	-1.512	-0.00088953	-3.3053	-0.0019445	-4.8173	-0.002834	588.2995601152173	72.844	1.5519	69.447	68.862	70.414	-3.3961					48	31	3	0	0	0	0.027455	1	5717	5717		34.173	0	1	99326			15713	33595	12780	12801	17461	17461					0.008030659403857499
HEKHESENL	9	Unmodified	_HEKHESENL_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	MULTI-MSMS	OvCa99_classI_Rep5	1	561.7620849609375	2	561.762352	1121.51015	-0.033033	-1.8557E-05	-0.082719	-4.6468E-05	-0.11575	-6.5025E-05	561.7622591606893	25.217	0.95267	25.217	24.99	25.943	0					49	18	5	0	0	0	0.44568	1	533	533		47.657	8.4045	1	1273100			15714	4957	12781	12802	17462	17462					-0.04574411435510228
HEKKGDVAL	9	Unmodified	_HEKKGDVAL_					0	0	0		ENSG00000113721|ENST00000261799|PDGFRB;nc|ENSG00000113721|P09619-2|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-MSMS	OvCa99_classI_Rep5	1	498.7772521972656	2	498.777274	995.539994	-0.25691	-0.00012814	0.011715	5.8433E-06	-0.24519	-0.0001223	498.7771411192428	30.261	0.74661	30.261	29.935	30.682	0					34	14	4	0	0	0	0.14855	1	1147	1147		85.161	20.954	1	382810			15715	2990	12782	12803	17463	17463					0.04204572300466225
HEKKVISSL	9	Unmodified	_HEKKVISSL_					0	0	0		ENSG00000150337|ENST00000369168|FCGR1A;nc|ENSG00000291135|Q92637-3|FCGR1BP;nc|ENSG00000291135|Q92637|FCGR1BP	ENSG00000150337|ENST00000369168|FCGR1A	ENSG00000150337|ENST00000369168|FCGR1A	MULTI-MSMS	OvCa99_classI_Rep5	1	520.8080444335938	2	520.808574	1039.60259	-1.2799	-0.00066658	0.38711	0.00020161	-0.89278	-0.00046497	520.8084405775262	37.462	1.0553	37.462	36.885	37.94	0					58	22	4	0	0	0	0.16562	1	2050	2050		82.241	34.325	1	919970			15716	5504	12783	12804	17464	17464					0.08437718368668357
HEKLSSIQ	8	Unmodified	_HEKLSSIQ_					0	0	0			REV__ENSG00000126861|ENST00000247271|OMG	REV__ENSG00000126861|ENST00000247271|OMG	MULTI-MSMS	OvCa9_classI_Rep2	2	471.2560729980469	2	471.256174	940.497795	-1.3199	-0.00062201	1.0702	0.00050433	-0.2497	-0.00011767	471.25655204988306	51.241	1.5868	48.428	48.104	49.691	-2.8129					86	31	3	0	0	0	0.38598	2	3358	3358;3385		90.777	16.522	1	532950	+		15717	18800	12784	12805	17465;17466	17465					0.025165968920987325
HEKQPDVIL	9	Unmodified	_HEKQPDVIL_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN-WDR67|2|fusion;UTRN-WDR67|1|fusion	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OvCa99_classI_Rep5	1	539.7999267578125	2	539.798206	1077.58186	-0.24241	-0.00013085	0.048428	2.6142E-05	-0.19398	-0.00010471	539.7981691611018	60.23	1.1826	60.23	59.802	60.984	0					70	28	5	0	0	0	0.094616	2	5251	5222;5251		98.629	29.002	1	4030500			15718	5647	12785	12806	17467;17468	17468					0.0461712798901317
HEKQPDVIL	9	Unmodified	_HEKQPDVIL_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN-WDR67|2|fusion;UTRN-WDR67|1|fusion	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OvCa9_classI_Rep2	2	539.79736328125	2	539.798206	1077.58186	-0.75774	-0.00040903	0.59032	0.00031865	-0.16742	-9.0372E-05	539.7984339695622	64.509	1.8654	61.784	61.128	62.993	-2.7245					95	35	5	0	0	0	0.1944	1	4915	4915		77.318	17.199	1	684690			15719	5647	12785	12806	17469	17469					0.0461712798901317
HEKQPDVIL	9	Unmodified	_HEKQPDVIL_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN-WDR67|2|fusion;UTRN-WDR67|1|fusion	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OvCa9_classI_Rep4_	4	539.7998046875	2	539.798206	1077.58186	-1.1603	-0.00062633	0.72715	0.00039252	-0.43315	-0.00023381	539.798546349156	65.355	1.6995	61.869	61.552	63.251	-3.4854					89	34	5	0	0	0	0.16562	2	4700	4689;4700		82.241	18.033	1	1140900			15720	5647	12785	12806	17470;17471	17471					0.0461712798901317
HEKSHSNLGV	10	Unmodified	_HEKSHSNLGV_					0	0	0		nc|ENSG00000112964|P10912-4|GHR;ENSG00000112964|ENST00000230882|GHR	nc|ENSG00000112964|P10912-4|GHR	nc|ENSG00000112964|P10912-4|GHR	MULTI-MSMS	OvCa99_classI_Rep5	1	554.2804565429688	2	554.280712	1106.54687	-0.24158	-0.0001339	0.24228	0.00013429	0.00070526	3.9091E-07	554.2807780817047	23.622	0.38911	23.622	23.447	23.836	0					19	7	4	0	0	0	0.62299	1	349	349		39.253	1.4413	1	148040			15721	2939	12786	12807	17472	17472					-0.002141148189366504
HEKTPEQLR	9	Unmodified	_HEKTPEQLR_					0	0	0		ENST00000513101.1_1_17:48540594-48548505:+|nuORF;nc|ENSG00000167107|Q96CM8-4|ACSF2;nc|ENSG00000167107|Q96CM8-3|ACSF2;ENSG00000167107|ENST00000300441|ACSF2;nc|ENSG00000167107|Q96CM8-2|ACSF2	ENST00000513101.1_1_17:48540594-48548505:+|nuORF	ENST00000513101.1_1_17:48540594-48548505:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.248291015625	2	569.304187	1136.59382	-0.045142	-2.57E-05	-0.82342	-0.00046878	-0.86857	-0.00049448	569.3032662395874	30.607	0.39776	30.607	30.433	30.831	0					14	7	3	0	0	0	0.027462	1	1196	1196		19.997	0	1	67969			15722	6756	12787	12808	17473	17473					0.030987447321649597
HEKVANGL	8	Unmodified	_HEKVANGL_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;ENST00000488384.1_1_20:34144716-34145272:+|nuORF	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-MSMS	OvCa9_classI_Rep4_	4	434.2378234863281	2	434.237784	866.461016	0.74445	0.00032327	-0.64865	-0.00028167	0.095803	4.1601E-05	434.2373721939325	38.735	1.3391	35.808	35.552	36.891	-2.9264					65	26	3	0	0	0	0.45246	3	1528	1528;1540;1553		82.305	19.035	1	306890			15723	3759	12788	12809	17474;17475;17476	17474					0.022443450661853603
HEKVANGL	8	Unmodified	_HEKVANGL_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;ENST00000488384.1_1_20:34144716-34145272:+|nuORF	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	434.237784	866.461016	-0.97146	-0.00042184	1.1831	0.00051376	0.21167	9.1916E-05	434.23815488500094	38.801	0.89022	36.091	35.865	36.755	-2.7097	0.14145	0.0010763	NaN	82.305	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70454			15724	3759	12788	12809							0.022443450661853603
HELDKQMNS	9	Unmodified	_HELDKQMNS_					0	0	0			REV__nc|ENSG00000138778|Q02224-3|CENPE	REV__nc|ENSG00000138778|Q02224-3|CENPE	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.2731323242188	2	551.253305	1100.49206	-0.49529	-0.00027303	-2.6453	-0.0014582	-3.1406	-0.0017313	551.2530473270291	50.999	0.30086	50.999	50.819	51.12	0					9	6	2	0	0	0	0.027462	1	3910	3910		37.159	17.799	1	219360	+		15725	19572	12789	12810	17477	17477					-0.054168696818805984
HELEHELHR	9	Unmodified	_HELEHELHR_					0	0	0			REV__tr|A0A553SUG5|A0A553SUG5_NIACICationtransporterOS=NialliacirculansOX=1397GN=CEQ21_06875PE=4SV=1	REV__tr|A0A553SUG5|A0A553SUG5_NIACICationtransporterOS=NialliacirculansOX=1397GN=CEQ21_06875PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	600.2988891601562	2	600.299436	1198.58432	2.214	0.0013291	-3.2942	-0.0019775	-1.0802	-0.00064843	600.2975706629667	71.676	3.4899	69.074	67.52	71.01	-2.6023					163	69	5	0	0	0	0.38529	1	3368	3368		53.351	3.8154	1	949150	+		15726	31072	12790	12811	17478	17478					-0.0070302355336480105
HELESKPGR	9	Unmodified	_HELESKPGR_					0	0	0			REV__ENSG00000154309|ENST00000675850|DISP1	REV__ENSG00000154309|ENST00000675850|DISP1	MULTI-MSMS	OvCa9_classI_Rep2	2	526.7774658203125	2	526.777805	1051.54106	-1.403	-0.00073905	0.93347	0.00049173	-0.46949	-0.00024732	526.7781858568062	52.709	2.3292	49.895	49.492	51.822	-2.8139					109	46	4	0	0	0	0.50149	1	3551	3551		42.396	0.96952	1	428250	+		15727	20377	12791	12812	17479	17479					0.0173478666936262
HELESTAARV	10	Unmodified	_HELESTAARV_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-MSMS	OvCa99_classI_Rep5	1	556.7886352539062	2	556.78837	1111.56219	-0.68625	-0.0003821	1.3366	0.00074419	0.65033	0.0003621	556.7889930619259	27.266	0.89844	27.266	27.092	27.991	0					25	17	2	0	0	0	0.58067	1	790	790		44.377	6.5657	1	451850	+		15728	17764	12792	12813	17480	17480					0.010867519782323143
HELETELCF	9	Unmodified	_HELETELCF_					0	0	0			REV__tr|A0A553SF27|A0A553SF27_NIACIPhzFfamilyphenazinebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_08110PE=3SV=1	REV__tr|A0A553SF27|A0A553SF27_NIACIPhzFfamilyphenazinebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_08110PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.2996826171875	2	560.752607	1119.49066	1.7923	0.001005	-1.1261	-0.00063145	0.6662	0.00037357	560.7518427253498	150.02	0.99968	150.02	149.79	150.79	0					27	19	2	0	0	0	0.027462	1	17596	17596		21.96	0	1	53242	+		15729	29530	12793	12814	17481	17481					-0.06430503770661744
HELGVYYLR	9	Unmodified	_HELGVYYLR_					0	0	0		ENST00000481917.5_1_2:239072313-239074302:+|nuORF	ENST00000481917.5_1_2:239072313-239074302:+|nuORF	ENST00000481917.5_1_2:239072313-239074302:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.2628784179688	2	575.306198	1148.59784	-2.6509	-0.0015251	-2.4353	-0.001401	-5.0862	-0.0029261	575.3049210977779	49.571	0.77492	46.429	46.147	46.922	-3.1416					21	14	2	0	0	0	0.027426	1	2837	2837		73.975	0	1	80799			15730	12557	12794	12815	17482	17482					0.029488342258673583
HELIQKAF	8	Unmodified	_HELIQKAF_					0	0	0			REV__tr|A0A7D6VQR3|A0A7D6VQR3_9CLOTHADfamilyhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16105PE=4SV=1	REV__tr|A0A7D6VQR3|A0A7D6VQR3_9CLOTHADfamilyhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16105PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	493.2779235839844	2	493.276909	984.539266	1.3654	0.00067352	1.7735	0.00087482	3.1389	0.0015483	493.27765041549196	62.273	1.0365	59.239	58.872	59.909	-3.0339					37	22	2	0	0	0	0.7549	1	2238	2238		24.203	0	1	32989	+		15731	31351	12795	12816	17483	17483					0.04637777651419128
HELITLFR	8	Unmodified	_HELITLFR_					0	0	0			REV__tr|A0A553STB6|A0A553STB6_NIACICDIimmunityproteindomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04685PE=4SV=1	REV__tr|A0A553STB6|A0A553STB6_NIACICDIimmunityproteindomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04685PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	514.779541015625	2	514.798009	1027.58147	0.36585	0.00018834	0.03448	1.775E-05	0.40033	0.00020609	514.7983690196419	73.288	0.49517	70.801	70.579	71.074	-2.4873					15	9	2	0	0	0	0.028476	1	3564	3564		79.939	3.0926	1	18034	+		15732	30944	12796	12817	17484	17484					0.06877753059802671
HELLERIGL	9	Unmodified	_HELLERIGL_					0	0	0		ENSG00000122122|ENST00000356892|SASH3	ENSG00000122122|ENST00000356892|SASH3	ENSG00000122122|ENST00000356892|SASH3	MULTI-MSMS	OvCa99_classI_Rep5	1	540.3155517578125	2	540.314023	1078.61349	2.627	0.0014194	-0.11573	-6.2528E-05	2.5113	0.0013569	540.3138257552602	94.198	1.4045	94.198	93.714	95.119	0					74	32	4	0	0	0	0.13504	1	10235	10235		87.696	15.819	1	4361200			15733	3518	12797	12818	17485	17485					0.07733120742932442
HELLFIYEII	10	Unmodified	_HELLFIYEII_					0	0	0		tr|A0A7D6VSV8|A0A7D6VSV8_9CLOTAdenylyl-sulfatereductasesubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_00540PE=4SV=1	tr|A0A7D6VSV8|A0A7D6VSV8_9CLOTAdenylyl-sulfatereductasesubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_00540PE=4SV=1	tr|A0A7D6VSV8|A0A7D6VSV8_9CLOTAdenylyl-sulfatereductasesubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_00540PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	430.235595703125	3	430.576185	1288.70673	-0.68037	-0.00029295	1.2335	0.00053113	0.55316	0.00023818	430.5766972802448	37.231	0.78365	37.231	36.977	37.761	0					36	16	3	0	0	0	0.026681	1	2045	2045		44.377	13.808	1	741210			15734	35063	12798	12819	17486	17486					0.07392000405525323
HELLREATE	9	Unmodified	_HELLREATE_					0	0	0		ENSG00000142513|ENST00000270593|ACP4	ENSG00000142513|ENST00000270593|ACP4	ENSG00000142513|ENST00000270593|ACP4	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.2844848632812	2	549.28292	1096.55129	-1.7469	-0.00095952	1.1633	0.00063898	-0.58355	-0.00032053	549.2834297855042	48.907	0.93575	45.799	45.553	46.489	-3.1077					53	17	4	0	0	0	0.38969	1	2741	2741		52.937	10.072	1	281690			15735	4976	12799	12820	17487	17487					0.006873496039361271
HELLWCLL	8	Carbamidomethyl (C)	_HELLWC(Carbamidomethyl (C))LL_	HELLWC(1)LL		HELLWC(100)LL		0	1	0			REV__ENST00000474587.1_1_6:31938852-31939308:-|nuORF	REV__ENST00000474587.1_1_6:31938852-31939308:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	542.2889404296875	2	542.28642	1082.55829	-0.085109	-4.6153E-05	2.1747	0.0011793	2.0896	0.0011331	542.2874748734855	71.087	3.0308	71.087	70.761	73.792	0					171	75	4	0	0	0	0.33727	1	6908	6908		100.27	15.112	1	36725000	+		15736	23147	12800	12821	17488	17488	272				0.020309909508114288
HELLWCLL	8	Carbamidomethyl (C)	_HELLWC(Carbamidomethyl (C))LL_	HELLWC(1)LL		HELLWC(78)LL		0	1	0			REV__ENST00000474587.1_1_6:31938852-31939308:-|nuORF	REV__ENST00000474587.1_1_6:31938852-31939308:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	542.2899169921875	2	542.28642	1082.55829	-1.1191	-0.00060689	2.8545	0.001548	1.7354	0.00094109	542.2878440208458	75.175	2.6999	73.204	72.586	75.286	-1.9711					125	51	4	0	0	0	0.49583	1	6174	6174		77.944	14.41	1	432180	+		15737	23147	12800	12821	17489	17489	272				0.020309909508114288
HELLWCLL	8	Carbamidomethyl (C)	_HELLWC(Carbamidomethyl (C))LL_	HELLWC(1)LL		HELLWC(66)LL		0	1	0			REV__ENST00000474587.1_1_6:31938852-31939308:-|nuORF	REV__ENST00000474587.1_1_6:31938852-31939308:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.8196411132812	2	542.28642	1082.55829	-0.28637	-0.00015529	2.0597	0.001117	1.7733	0.00096166	542.2873743971204	75.275	2.8073	72.864	72.488	75.295	-2.4106					146	54	5	0	0	0	0.028476	1	3816	3816		65.897	7.1155	1	512610	+		15738	23147	12800	12821	17490	17490	272				0.020309909508114288
HELLWCLL	8	Carbamidomethyl (C)	_HELLWC(Carbamidomethyl (C))LL_					0	1	0			REV__ENST00000474587.1_1_6:31938852-31939308:-|nuORF	REV__ENST00000474587.1_1_6:31938852-31939308:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	542.28642	1082.55829	-1.1191	-0.00060689	2.8545	0.001548	1.7354	0.00094109	542.2878440208458	75.175	2.6999	73.204	72.586	75.286	-1.9711	0.067663	0.00039237	NaN	65.897	125	51	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	432180	+		15739	23147	12800	12821			272				0.020309909508114288
HELLWERHR	9	Unmodified	_HELLWERHR_					0	0	0		ENSG00000165724|ENST00000298585|ZMYND19	ENSG00000165724|ENST00000298585|ZMYND19	ENSG00000165724|ENST00000298585|ZMYND19	MULTI-MSMS	OvCa99_classI_Rep5	1	638.3386840820312	2	638.338895	1274.66324	-0.087508	-5.5859E-05	-1.1191	-0.00071435	-1.2066	-0.00077021	638.3380634293336	48.66	0.75124	48.66	48.412	49.164	0					37	16	4	0	0	0	0.12365	1	3589	3589		90.777	11.326	1	785690			15740	6595	12801	12822	17491	17491					0.03689248471573592
HELMYQYEL	9	Unmodified	_HELMYQYEL_					0	0	0			REV__ENSG00000184445|ENST00000333479|KNTC1	REV__ENSG00000184445|ENST00000333479|KNTC1	MULTI-MSMS	OvCa99_classI_Rep5	1	613.7926635742188	2	613.281531	1224.54851	3.1096	0.0019071	-3.7423	-0.0022951	-0.63267	-0.00038801	613.2790814555768	89.754	0.74871	89.754	89.352	90.101	0					37	17	3	0	0	0	0.38969	1	9608	9608		52.937	10.541	1	668710	+		15741	22428	12802	12823	17492	17492					-0.05478241845230514
HELMYQYEL	9	Unmodified	_HELMYQYEL_					0	0	0			REV__ENSG00000184445|ENST00000333479|KNTC1	REV__ENSG00000184445|ENST00000333479|KNTC1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	613.281531	1224.54851	3.1096	0.0019071	-3.7423	-0.0022951	-0.63267	-0.00038801	613.2790814555768	89.754	0.74871	89.754	89.352	90.101	0	0.12899	-5.0465E-05	NaN	52.937	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	668710	+		15742	22428	12802	12823							-0.05478241845230514
HELMYQYEL	9	Unmodified	_HELMYQYEL_					0	0	0			REV__ENSG00000184445|ENST00000333479|KNTC1	REV__ENSG00000184445|ENST00000333479|KNTC1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	613.281531	1224.54851	0.89563	0.00054928	-4.1013	-0.0025153	-3.2057	-0.001966	613.2789441083037	90.866	1.076	89.631	89.143	90.219	-1.2355	0.0057346	-0.00049088	NaN	52.937	50	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63957	+		15743	22428	12802	12823							-0.05478241845230514
HELMYQYEL	9	Unmodified	_HELMYQYEL_					0	0	0			REV__ENSG00000184445|ENST00000333479|KNTC1	REV__ENSG00000184445|ENST00000333479|KNTC1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	613.281531	1224.54851	0.39395	0.0002416	-3.995	-0.0024501	-3.6011	-0.0022085	613.2789262921044	91.597	0.91153	89.573	89.13	90.041	-2.0241	-0.051848	-0.00036051	NaN	52.937	53	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83749	+		15744	22428	12802	12823							-0.05478241845230514
HELMYQYEL	9	Unmodified	_HELMYQYEL_					0	0	0			REV__ENSG00000184445|ENST00000333479|KNTC1	REV__ENSG00000184445|ENST00000333479|KNTC1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	613.281531	1224.54851	-0.42275	-0.00025927	-2.8433	-0.0017438	-3.2661	-0.002003	613.2796888819585	92.085	1.065	89.542	89.111	90.176	-2.5425	-0.082876	0.0010521	NaN	52.937	49	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110460	+		15745	22428	12802	12823							-0.05478241845230514
HELNIKQLR	9	Unmodified	_HELNIKQLR_					0	0	0			REV__UBL4B|p.S126N|1|0.5|ENSG00000186150|chr1:110112911-110112911|G/A|missense_variant	REV__UBL4B|p.S126N|1|0.5|ENSG00000186150|chr1:110112911-110112911|G/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.2628784179688	2	575.838197	1149.66184	-2.3265	-0.0013397	1.8107	0.0010427	-0.51582	-0.00029703	575.839002719635	49.878	0.83318	46.737	46.507	47.34	-3.1416					34	15	3	0	0	0	0.027462	1	2837	2837		44.117	3.3386	1	60215	+		15746	32745	12803	12824	17493	17493					0.09299614382825894
HELNIKQLR	9	Unmodified	_HELNIKQLR_					0	0	0			REV__UBL4B|p.S126N|1|0.5|ENSG00000186150|chr1:110112911-110112911|G/A|missense_variant	REV__UBL4B|p.S126N|1|0.5|ENSG00000186150|chr1:110112911-110112911|G/A|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	575.838197	1149.66184	-1.6687	-0.00096088	1.3027	0.00075013	-0.36599	-0.00021075	575.8386828363899	49.377	1.2869	46.617	46.127	47.414	-2.7603	-0.059888	-0.00019037	NaN	44.117	50	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65369	+		15747	32745	12803	12824							0.09299614382825894
HELNNVQD	8	Unmodified	_HELNNVQD_					0	0	0		nc|ENSG00000198689|Q92581|SLC9A6;nc|ENSG00000198689|Q92581-3|SLC9A6;ENSG00000198689|ENST00000630721|SLC9A6	nc|ENSG00000198689|Q92581|SLC9A6	nc|ENSG00000198689|Q92581|SLC9A6	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.7779235839844	2	484.725238	967.435923	-0.42896	-0.00020793	0.60864	0.00029502	0.17968	8.7094E-05	484.7254390846928	38.947	0.58213	38.947	38.75	39.332	0					26	12	3	0	0	0	0.028476	1	2284	2284		37.159	17.162	1	386580			15748	15260	12804	12825	17494	17494					-0.04909754527045607
HELPLPHSV	9	Unmodified	_HELPLPHSV_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1;ENST00000467888.5_1_2:46525050-46574567:+|nuORF	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-MSMS	OvCa9_classI_Rep2	2	514.7776489257812	2	514.779816	1027.54508	-0.032268	-1.6611E-05	-0.17667	-9.0946E-05	-0.20894	-0.00010756	514.7795894100196	73.067	2.9774	70.667	70.063	73.04	-2.3999					144	56	4	0	0	0	0.079296	1	5953	5953		102.77	17.414	1	449310			15749	3149	12805	12826	17495	17495					0.03240876163090434
HELPLPHSV	9	Unmodified	_HELPLPHSV_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1;ENST00000467888.5_1_2:46525050-46574567:+|nuORF	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-MSMS	OvCa9_classI_Rep3	3	514.7791137695312	2	514.779816	1027.54508	0.33502	0.00017246	-0.65043	-0.00033483	-0.31541	-0.00016237	514.779405358466	73.267	2.3697	70.779	70.232	72.602	-2.4873					129	47	3	0	0	0	0.027416	8	3577	3543;3546;3552;3558;3570;3577;3583;3591		138.24	47.466	1	653280			15750	3149	12805	12826	17496;17497;17498;17499;17500;17501;17502;17503	17501					0.03240876163090434
HELPLPHSV	9	Unmodified	_HELPLPHSV_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1;ENST00000467888.5_1_2:46525050-46574567:+|nuORF	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.7803955078125	2	514.779816	1027.54508	-0.54729	-0.00028174	0.14023	7.2189E-05	-0.40706	-0.00020955	514.7796961645727	74.338	2.0167	71.107	70.579	72.596	-3.2308					120	41	4	0	0	0	0.031958	3	5788	5788;5798;5831		133.81	36.069	1	610760			15751	3149	12805	12826	17504;17505;17506	17504					0.03240876163090434
HELQAVLLAL	10	Unmodified	_HELQAVLLAL_					0	0	0		ENST00000422704.6_3_9:92020457-92070849:-|nuORF;ENST00000418828.1_2_9:92020457-92051292:-|nuORF;ENST00000433650.5_2_9:92020457-92020774:-|nuORF	ENST00000422704.6_3_9:92020457-92070849:-|nuORF	ENST00000422704.6_3_9:92020457-92070849:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8302612304688	2	553.832049	1105.64954	0.13277	7.3535E-05	-3.4573	-0.0019148	-3.3245	-0.0018412	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.75594	1	14110	14110		24.203	1.1603	1	400120			15752	11647	12806	12827	17507	17507					0.10094577919790026
HELRGGPL	8	Unmodified	_HELRGGPL_					0	0	0		nc|ENSG00000101811|P33240-2|CSTF2;ENSG00000101811|ENST00000372972|CSTF2	nc|ENSG00000101811|P33240-2|CSTF2	nc|ENSG00000101811|P33240-2|CSTF2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	439.26153564453125	2	439.745776	877.477	-1.1411	-0.00050178	-3.0835	-0.0013559	-4.2245	-0.0018577	439.7445094175021	72.049	0.82605	68.593	68.27	69.096	-3.4563					25	16	2	0	0	0	0.028476	1	5506	5506		52.299	15.271	1	41875			15753	2200	12807	12828	17508	17508					0.03336051303097065
HELRGGPL	8	Unmodified	_HELRGGPL_					0	0	0		nc|ENSG00000101811|P33240-2|CSTF2;ENSG00000101811|ENST00000372972|CSTF2	nc|ENSG00000101811|P33240-2|CSTF2	nc|ENSG00000101811|P33240-2|CSTF2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	439.745776	877.477	1.5904	0.00069937	-5.4755	-0.0024078	-3.8851	-0.0017084	439.7434883104334	71.1	0.78699	68.592	68.281	69.068	-2.5071	-0.0002629	-0.0012519	NaN	38.806	16	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11951			15754	2200	12807	12828							0.03336051303097065
HELRQAIGL	9	Unmodified	_HELRQAIGL_					0	0	0		ENSG00000115271|ENST00000437150|GCA;ENST00000487445.6_1_2:163200677-163215720:+|nuORF;ENST00000479199.1_1_2:163200728-163213435:+|nuORF	ENSG00000115271|ENST00000437150|GCA	ENSG00000115271|ENST00000437150|GCA	MULTI-MSMS	OvCa99_classI_Rep5	1	518.8018188476562	2	518.79854	1035.58253	-0.99222	-0.00051476	1.1531	0.00059825	0.16093	8.3488E-05	518.7989816797513	66.231	0.95517	66.231	65.984	66.939	0					57	23	3	0	0	0	0.10502	1	6132	6132		95.815	10.9	1	3638200			15755	3079	12808	12829	17509	17509					0.06615967428683689
HELSNLRLE	9	Unmodified	_HELSNLRLE_					0	0	0		ENSG00000066455|ENST00000163416|GOLGA5;nc|ENSG00000066455|Q8TBA6-2|GOLGA5	ENSG00000066455|ENST00000163416|GOLGA5	ENSG00000066455|ENST00000163416|GOLGA5	MULTI-SECPEP	OvCa9_classI_Rep3	3	555.8411254882812	2	555.798737	1109.58292	0.49353	0.0002743	-0.60293	-0.00033511	-0.1094	-6.0806E-05	555.7982331758594	67.24	1.2564	64.353	63.933	65.189	-2.8873					32	24	3	0	0	0	0.027462	1	2876	2876		24.519	3.5723	1	17971			15756	1352	12809	12830	17510	17510					0.03251342357884823
HELSNLRLE	9	Unmodified	_HELSNLRLE_					0	0	0		ENSG00000066455|ENST00000163416|GOLGA5;nc|ENSG00000066455|Q8TBA6-2|GOLGA5	ENSG00000066455|ENST00000163416|GOLGA5	ENSG00000066455|ENST00000163416|GOLGA5	MULTI-MATCH	OvCa99_classI_Rep5	1		2	555.798737	1109.58292	-0.49006	-0.00027237	-4.1177	-0.0022886	-4.6078	-0.002561	555.7962336620647	64.327	0.37799	64.327	64.21	64.588	0	0.04157	-0.0025702	NaN	24.519	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	480140			15757	1352	12809	12830							0.03251342357884823
HELTIDRI	8	Unmodified	_HELTIDRI_					0	0	0			REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.77886962890625	2	498.777274	995.539994	0.78344	0.00039076	-1.2201	-0.00060857	-0.43668	-0.0002178	498.77661787126965	67.346	2.3106	63.856	63.442	65.753	-3.4902					107	46	4	0	0	0	0.42208	2	4934	4934;4945		85.359	0	1	836140	+		15758	21744	12810	12831	17511;17512	17511					0.04204572300466225
HEMLTLQSK	9	Unmodified	_HEMLTLQSK_					0	0	0			REV__nc|ENSG00000144031|Q8N9V6-2|ANKRD53	REV__nc|ENSG00000144031|Q8N9V6-2|ANKRD53	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.285888671875	2	543.784241	1085.55393	-0.22634	-0.00012308	0.24453	0.00013297	0.018184	9.8882E-06	543.7842093422754	51.137	1.3952	51.137	50.775	52.17	0					60	32	3	0	0	0	0.027462	1	4027	4027		25.574	1.3713	1	2216700	+		15759	19885	12811	12832	17513	17513					0.0145748173724769
HEMTSIKVK	9	Unmodified	_HEMTSIKVK_					0	0	0			REV__ENST00000502495.1_1_4:129805634-129873545:-|nuORF	REV__ENST00000502495.1_1_4:129805634-129873545:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	536.7943725585938	2	536.794609	1071.57467	-0.092653	-4.9735E-05	-2.5209	-0.0013532	-2.6136	-0.0014029	536.794524516997	42.838	1.5326	40.128	39.621	41.153	-2.7097					90	30	4	0	0	0	0.31747	2	2334	2328;2334		60.972	2.19	1	170530	+		15760	20235	12812	12833	17514;17515	17515					0.0417407211691625
HENDTIYSL	9	Unmodified	_HENDTIYSL_					0	0	0		ENSG00000162365|ENST00000371891|CYP4A22;nc|ENSG00000162365|Q5TCH4-2|CYP4A22	ENSG00000162365|ENST00000371891|CYP4A22	ENSG00000162365|ENST00000371891|CYP4A22	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.2548828125	2	546.253828	1090.4931	-0.88844	-0.00048531	0.51271	0.00028007	-0.37573	-0.00020525	546.2539760211713	79.765	1.7497	77.014	76.703	78.453	-2.7514					82	35	3	0	0	0	0.28934	1	6482	6482		64.207	7.4862	1	568660			15761	6171	12813	12834	17516	17516					-0.048523320413323745
HENDTIYSL	9	Unmodified	_HENDTIYSL_					0	0	0		ENSG00000162365|ENST00000371891|CYP4A22;nc|ENSG00000162365|Q5TCH4-2|CYP4A22	ENSG00000162365|ENST00000371891|CYP4A22	ENSG00000162365|ENST00000371891|CYP4A22	MULTI-MATCH	OvCa9_classI_Rep2	2		2	546.253828	1090.4931	0.087401	4.7743E-05	-0.39416	-0.00021531	-0.30676	-0.00016757	546.253488669684	78.918	1.9127	77.178	76.512	78.424	-1.7398	0.082107	-0.00050987	NaN	64.207	96	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152230			15762	6171	12813	12834							-0.048523320413323745
HENDVAALLK	10	Unmodified	_HENDVAALLK_					0	0	0		nc|ENSG00000112186|P40123-2|CAP2;ENSG00000112186|ENST00000229922|CAP2	nc|ENSG00000112186|P40123-2|CAP2	nc|ENSG00000112186|P40123-2|CAP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.828125	2	555.301113	1108.58767	-0.56768	-0.00031523	-4.2316	-0.0023498	-4.7992	-0.002665	555.2989724319162	59.322	0.11238	59.322	59.265	59.377	0					4	2	2	0	0	0	0.026891	1	5104	5104		47.657	28.554	1	210250			15763	2883	12814	12835	17517	17517					0.037722265006550515
HENDVKTAL	9	Unmodified	_HENDVKTAL_					0	0	0		nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8	nc|ENSG00000165533|Q8TAM2-3|TTC8	nc|ENSG00000165533|Q8TAM2-3|TTC8	MULTI-MSMS	OvCa99_classI_Rep5	1	513.7734985351562	2	513.764363	1025.51417	-0.64628	-0.00033203	0.57266	0.00029421	-0.073617	-3.7822E-05	513.7645853395031	40.223	1.2237	40.223	39.971	41.195	0					66	26	4	0	0	0	0.37135	1	2434	2434		54.776	3.4409	1	2900700			15764	6576	12815	12836	17518	17518					0.0024367805817746557
HENEDIYKL	9	Unmodified	_HENEDIYKL_					0	0	0		ENSG00000102753|ENST00000261667|KPNA3;ENSG00000186432|ENST00000334256|KPNA4	ENSG00000102753|ENST00000261667|KPNA3	ENSG00000102753|ENST00000261667|KPNA3	MULTI-MSMS	OvCa99_classI_Rep5	1	580.7841796875	2	580.782753	1159.55095	-0.21647	-0.00012572	-0.30377	-0.00017642	-0.52024	-0.00030214	580.7825311182231	62.556	0.44998	62.556	62.253	62.703	0					43	10	5	0	0	0	0.0079674	2	5584	5554;5584		199.89	75.297	1	21973000			15765	2251	12816	12837	17519;17520	17520					-0.022440701158984666
HENEDIYKL	9	Unmodified	_HENEDIYKL_					0	0	0		ENSG00000102753|ENST00000261667|KPNA3;ENSG00000186432|ENST00000334256|KPNA4	ENSG00000102753|ENST00000261667|KPNA3	ENSG00000102753|ENST00000261667|KPNA3	MULTI-MSMS	OvCa9_classI_Rep4_	4	580.7839965820312	2	580.782753	1159.55095	0.078675	4.5693E-05	-0.45203	-0.00026253	-0.37336	-0.00021684	580.78233050321	67.105	2.2117	63.615	63.344	65.556	-3.4902					104	44	3	0	0	0	0.023079	3	4924	4912;4924;4937		143.37	52.597	1	835060			15766	2251	12816	12837	17521;17522;17523	17522					-0.022440701158984666
HENEDIYKL	9	Unmodified	_HENEDIYKL_					0	0	0		ENSG00000102753|ENST00000261667|KPNA3;ENSG00000186432|ENST00000334256|KPNA4	ENSG00000102753|ENST00000261667|KPNA3	ENSG00000102753|ENST00000261667|KPNA3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	580.782753	1159.55095	0.15809	9.1817E-05	-0.56717	-0.0003294	-0.40908	-0.00023759	580.7823546553474	66.337	2.1793	63.641	63.121	65.3	-2.6958	0.013183	-6.4002E-05	NaN	143.37	106	43	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	326570			15767	2251	12816	12837							-0.022440701158984666
HENFLAYS	8	Unmodified	_HENFLAYS_					0	0	0			REV__tr|A0A7D6ZFJ2|A0A7D6ZFJ2_9CLOTFibronectintypeIIIdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18125PE=4SV=1	REV__tr|A0A7D6ZFJ2|A0A7D6ZFJ2_9CLOTFibronectintypeIIIdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18125PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	490.7249450683594	2	490.727249	979.439946	-0.56941	-0.00027943	-3.8297	-0.0018793	-4.3991	-0.0021588	490.72528584352415	40.549	1.2561	40.549	40.294	41.55	0					65	27	4	0	0	0	0.50674	1	2458	2458		76.847	2.8719	1	2891900	+		15768	31971	12817	12838	17524	17524					-0.050596650333318394
HENKGVYV	8	Unmodified	_HENKGVYV_					0	0	0		nc|ENSG00000128928|P26440-2|IVD;ENSG00000128928|ENST00000487418|IVD;nc|ENSG00000128928|P26440|IVD	nc|ENSG00000128928|P26440-2|IVD	nc|ENSG00000128928|P26440-2|IVD	MULTI-MSMS	OvCa9_classI_Rep2	2	473.2422790527344	2	473.243067	944.47158	-1.2197	-0.00057723	1.2228	0.00057867	0.0030476	1.4423E-06	473.24345691842643	53.714	1.8932	50.9	50.479	52.372	-2.8139					103	37	4	0	0	0	0.66704	1	3665	3665		50.025	4.0726	1	437470			15769	3914	12818	12839	17525	17525					-0.0028767227937578355
HENPIKSKIR	10	Unmodified	_HENPIKSKIR_					0	0	0			REV__ENSG00000102221|ENST00000614628|JADE3	REV__ENSG00000102221|ENST00000614628|JADE3	MULTI-MSMS	OvCa9_classI_Rep3	3	611.35498046875	2	611.356754	1220.69895	-2.3862	-0.0014588	1.1145	0.00068137	-1.2716	-0.00077742	611.3572929291362	147.43	3.7918	146.48	144.56	148.35	-0.9512					254	75	5	0	0	0	0.762	1	12315	12315		23.523	2.5758	1	250910	+		15770	17544	12819	12840	17526	17526					0.09743285928584555
HENYMKILL	9	Unmodified	_HENYMKILL_					0	0	0		ENST00000519559.1_1_8:52732913-52752014:-|nuORF;nc|ENSG00000168300|Q96MG8-2|PCMTD1;ENSG00000168300|ENST00000522514|PCMTD1	ENST00000519559.1_1_8:52732913-52752014:-|nuORF	ENST00000519559.1_1_8:52732913-52752014:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	580.812255859375	2	580.810259	1159.60597	2.1682	0.0012593	0.37903	0.00022014	2.5472	0.0014795	580.8102157940617	94.454	1.1069	94.454	94.177	95.284	0					67	25	4	0	0	0	0.10502	1	10270	10270		95.815	29.386	1	2845500			15771	6890	12820	12841	17527	17527					0.03254645151037039
HENYMKILL	9	Unmodified	_HENYMKILL_					0	0	0		ENST00000519559.1_1_8:52732913-52752014:-|nuORF;nc|ENSG00000168300|Q96MG8-2|PCMTD1;ENSG00000168300|ENST00000522514|PCMTD1	ENST00000519559.1_1_8:52732913-52752014:-|nuORF	ENST00000519559.1_1_8:52732913-52752014:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	580.810259	1159.60597	-1.9155	-0.0011126	-4.2187	-0.0024503	-6.1342	-0.0035628	580.808428040205	96.347	0.40359	94.518	94.32	94.724	-1.8286	0.032112	-0.0049949	NaN	95.815	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14421			15772	6890	12820	12841							0.03254645151037039
HEPDIEQML	9	Unmodified	_HEPDIEQML_					0	0	0		nc|ENSG00000243244|Q9Y6Q2-3|STON1;nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;ENSG00000243244|ENST00000404752|STON1	nc|ENSG00000243244|Q9Y6Q2-3|STON1	nc|ENSG00000243244|Q9Y6Q2-3|STON1	MULTI-MSMS	OvCa99_classI_Rep5	1	556.2584838867188	2	556.258056	1110.50156	2.9499	0.0016409	-0.95284	-0.00053002	1.997	0.0011109	556.2572901516309	100.89	0.78756	100.89	100.57	101.36	0					45	18	3	0	0	0	0.19758	1	11196	11196		76.774	7.9873	1	1075000			15773	1397	12821	12842	17528	17528					-0.04927101396356193
HEPDIEQML	9	Unmodified	_HEPDIEQML_					0	0	0		nc|ENSG00000243244|Q9Y6Q2-3|STON1;nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;ENSG00000243244|ENST00000404752|STON1	nc|ENSG00000243244|Q9Y6Q2-3|STON1	nc|ENSG00000243244|Q9Y6Q2-3|STON1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	556.258056	1110.50156	-0.73923	-0.0004112	-0.13565	-7.5459E-05	-0.87488	-0.00048666	556.759835395442	102.78	0.46825	101.26	101	101.47	-1.5211	0.18554	0.00081862	NaN	76.774	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13180			15774	1397	12821	12842							-0.04927101396356193
HEPFVFGL	8	Unmodified	_HEPFVFGL_					0	0	0		tr|A0A7D6VUY9|A0A7D6VUY9_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_03430PE=4SV=1	tr|A0A7D6VUY9|A0A7D6VUY9_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_03430PE=4SV=1	tr|A0A7D6VUY9|A0A7D6VUY9_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_03430PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	473.242431640625	2	473.245078	944.475603	-1.2197	-0.00057723	-3.0274	-0.0014327	-4.2471	-0.0020099	473.24345691842643	53.714	1.8932	50.9	50.479	52.372	-2.8139					103	37	4	0	0	0	0.63104	1	3659	3659		57.453	7.4281	1	437470			15775	35203	12822	12843	17529	17529					0.0011441721434266583
HEPRIKAV	8	Unmodified	_HEPRIKAV_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;SPTAN1|p.Q1734Rfs*19|1|0.63|ENSG00000197694|chr9:128615697-128615725|CCAAGTAAAGGACAAGAGGGACACCATCA/-|frameshift_variant;SPTAN1|p.M1752Ifs*16|1|0.07|ENSG00000197694|chr9:128615752-128615753|-/TTCCTGAGTTCTTATG|frameshift_variant;SPTAN1|p.C956Afs*33|1|0.61|ENSG00000197694|chr9:128587691-128587691|C/-|frameshift_variant	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	OvCa99_classI_Rep5	1	475.28399658203125	2	475.282526	948.550499	-0.53244	-0.00025306	-0.55106	-0.00026191	-1.0835	-0.00051497	475.28185026006497	59.302	2.2719	59.302	58.973	61.245	0					106	56	4	0	0	0	0.62934	2	5111	5081;5111		57.811	5.5121	1	4096100			15776	8736	12823	12844	17530;17531	17531					0.07416599745556596
HEPRIKAV	8	Unmodified	_HEPRIKAV_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;SPTAN1|p.Q1734Rfs*19|1|0.63|ENSG00000197694|chr9:128615697-128615725|CCAAGTAAAGGACAAGAGGGACACCATCA/-|frameshift_variant;SPTAN1|p.M1752Ifs*16|1|0.07|ENSG00000197694|chr9:128615752-128615753|-/TTCCTGAGTTCTTATG|frameshift_variant;SPTAN1|p.C956Afs*33|1|0.61|ENSG00000197694|chr9:128587691-128587691|C/-|frameshift_variant	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	475.282526	948.550499	0.21285	0.00010117	-0.96228	-0.00045736	-0.74943	-0.00035619	475.2818368632849	62.587	0.97485	59.129	58.765	59.74	-3.4577	-0.086732	-0.00015212	NaN	57.811	29	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24621			15777	8736	12823	12844							0.07416599745556596
HEPTIPKR	8	Unmodified	_HEPTIPKR_					0	0	0			REV__IFI44L|p.R376Dfs*3|1|0.04|ENSG00000137959|chr1:78641098-78641098|A/-|frameshift_variant	REV__IFI44L|p.R376Dfs*3|1|0.04|ENSG00000137959|chr1:78641098-78641098|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	489.2808532714844	2	489.279983	976.545414	-0.84122	-0.00041159	0.53042	0.00025952	-0.3108	-0.00015207	489.28011614418386	59.284	0.86842	59.284	59.011	59.879	0					72	22	4	0	0	0	0.47599	2	5106	5077;5106		79.939	19.645	1	10996000	+		15778	19495	12824	12845	17532;17533	17533					0.05620295882943083
HEQHRYFN	8	Unmodified	_HEQHRYFN_					0	0	0		tr|A0A553SQI4|A0A553SQI4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07750PE=4SV=1	tr|A0A553SQI4|A0A553SQI4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07750PE=4SV=1	tr|A0A553SQI4|A0A553SQI4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07750PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.7894287109375	2	565.759946	1129.50534	-0.60284	-0.00034106	2.9214	0.0016528	2.3185	0.0013117	565.7610682064526	50.209	1.9934	47.068	46.663	48.656	-3.1416					76	38	3	0	0	0	0.028476	1	3037	3037		31.955	8.9124	1	250990			15779	34164	12825	12846	17534	17534					-0.0542325078763497
HEQKEQISL	9	Unmodified	_HEQKEQISL_					0	0	0		ENSG00000167393|ENST00000390665|PPP2R3B;ENST00000477110.6_1_X:299337-302121:-|nuORF;nc|ENSG00000292327|Q9Y5P8-2|PPP2R3B;ENST00000468169.6_1_X:299440-306311:-|nuORF	ENSG00000167393|ENST00000390665|PPP2R3B	ENSG00000167393|ENST00000390665|PPP2R3B	MULTI-MSMS	OvCa99_classI_Rep5	1	556.2914428710938	2	556.290745	1110.56694	-0.17203	-9.5696E-05	-0.62562	-0.00034803	-0.79765	-0.00044372	556.2902108158303	48.552	1.0912	48.552	48.073	49.164	0					56	24	3	0	0	0	0.22621	1	3564	3564		71.877	8.3436	1	1340300			15780	6786	12826	12847	17535	17535					0.016076361210025425
HEQKLIRYWKR	11	Unmodified	_HEQKLIRYWKR_					0	0	0			REV__nc|ENSG00000070495|Q6NYC1-2|JMJD6	REV__nc|ENSG00000070495|Q6NYC1-2|JMJD6	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.8102416992188	3	519.631798	1555.87356	0.39412	0.0002048	-2.4362	-0.0012659	-2.0421	-0.0010611	519.6306845944241	97.027	0.8358	96.068	95.825	96.661	-0.95856					39	16	3	0	0	0	0.026383	1	8827	8827		12.957	6.6366	1	33165	+		15781	16880	12827	12848	17536	17536					0.1178628607376595
HEQKLIRYWKR	11	Unmodified	_HEQKLIRYWKR_					0	0	0			REV__nc|ENSG00000070495|Q6NYC1-2|JMJD6	REV__nc|ENSG00000070495|Q6NYC1-2|JMJD6	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.811767578125	3	519.631798	1555.87356	-0.064665	-3.3602E-05	-1.6742	-0.00086997	-1.7389	-0.00090357	519.9656246052568	98.213	0.82825	96.453	96.262	97.091	-1.7595					34	15	3	0	0	0	0.026324	1	6584	6584		8.0344	0	1	27854	+		15782	16880	12827	12848	17537	17537					0.1178628607376595
HEQKLIRYWKR	11	Unmodified	_HEQKLIRYWKR_					0	0	0			REV__nc|ENSG00000070495|Q6NYC1-2|JMJD6	REV__nc|ENSG00000070495|Q6NYC1-2|JMJD6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.8125	3	519.631798	1555.87356	-0.50981	-0.00026491	-2.391	-0.0012424	-2.9008	-0.0015073	519.6314495628468	98.697	0.98064	96.318	96.022	97.002	-2.3786					31	18	3	0	0	0	0.026401	1	8801	8801		17.167	9.1324	1	35523	+		15783	16880	12827	12848	17538	17538					0.1178628607376595
HERDAFDTL	9	Unmodified	_HERDAFDTL_					0	0	0		ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	MULTI-MSMS	OvCa99_classI_Rep5	1	552.2608642578125	2	552.259445	1102.50434	0.37801	0.00020876	-0.73134	-0.00040389	-0.35332	-0.00019513	552.2589816724573	63.394	1.0317	63.394	63.1	64.132	0					70	25	5	0	0	0	0.014964	2	5687	5687;5716		153.04	68.12	1	7963000			15784	8737	12828	12849	17539;17540	17539					-0.04281509947190898
HERDAFDTL	9	Unmodified	_HERDAFDTL_					0	0	0		ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	MULTI-MSMS	OvCa9_classI_Rep2	2	552.2581176757812	2	552.259445	1102.50434	-0.40313	-0.00022263	0.17289	9.5481E-05	-0.23024	-0.00012715	552.2594267332345	68.322	2.3823	65.701	65.131	67.513	-2.6203					123	47	4	0	0	0	0.049969	8	5382	5359;5365;5371;5376;5382;5387;5393;5401		118.74	43.624	1	508530			15785	8737	12828	12849	17541;17542;17543;17544;17545;17546;17547;17548	17545					-0.04281509947190898
HERDAFDTL	9	Unmodified	_HERDAFDTL_					0	0	0		ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.260498046875	2	552.259445	1102.50434	-0.56166	-0.00031018	0.087599	4.8378E-05	-0.47406	-0.00026181	552.2593824532872	69.267	1.6615	65.786	65.42	67.081	-3.4812					96	33	4	0	0	0	0.049969	3	5165	5165;5179;5193		118.74	44.488	1	879150			15786	8737	12828	12849	17549;17550;17551	17549					-0.04281509947190898
HERDAFDTL	9	Unmodified	_HERDAFDTL_					0	0	0		ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	MULTI-MATCH	OvCa99_classI_Rep5	1		2	552.259445	1102.50434	-1.1013	-0.00060821	1.2285	0.00067847	0.12722	7.0259E-05	552.2599726838845	65.644	0.36353	65.644	65.467	65.831	0	-0.066329	0.0011723	NaN	118.74	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	337760			15787	8737	12828	12849							-0.04281509947190898
HERIEPQS	8	Unmodified	_HERIEPQS_					0	0	0			REV__ENST00000554270.5_1_14:88936247-89016761:-|nuORF	REV__ENST00000554270.5_1_14:88936247-89016761:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.76922607421875	2	498.24888	994.483208	-1.2067	-0.00060126	1.1866	0.00059121	-0.02018	-1.0055E-05	498.2493657121518	34.468	0.42202	34.468	34.257	34.679	0					13	8	2	0	0	0	0.028476	1	1658	1658		26.693	0	1	80683	+		15788	16890	12829	12850	17552	17552					-0.014254752560532324
HERILAIGL	9	Unmodified	_HERILAIGL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	OvCa9_classI_Rep3	3	511.3109436035156	2	511.311284	1020.60801	-0.65908	-0.00033699	0.13116	6.7061E-05	-0.52792	-0.00026993	511.3112069201298	96.875	2.3438	95.046	94.521	96.865	-1.8286					113	45	3	0	0	0	0.34132	1	6415	6415		58.23	8.7884	1	453580			15789	4862	12830	12851	17553	17553					0.09853441951122477
HERILAIGL	9	Unmodified	_HERILAIGL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.31134033203125	2	511.311284	1020.60801	0.54722	0.0002798	-1.2212	-0.00062442	-0.67399	-0.00034462	511.3104786635367	97.49	2.846	95.112	94.467	97.313	-2.3786					116	55	3	0	0	0	0.42576	3	8639	8639;8650;8679		49.536	14.335	1	411720			15790	4862	12830	12851	17554;17555;17556	17554					0.09853441951122477
HERILSEELV	10	Unmodified	_HERILSEELV_					0	0	0		ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	ENSG00000112367|ENST00000230124|FIG4	MULTI-SECPEP	OvCa99_classI_Rep5	1	613.7926635742188	2	612.832777	1223.651	3.1504	0.0019307	-0.96446	-0.00059105	2.1859	0.0013396	612.8318710607346	89.797	0.58446	89.797	89.476	90.06	0					24	13	3	0	0	0	0.026659	1	9608	9608		45.972	0	1	414610			15791	2902	12831	12852	17557	17557					0.04812167217892238
HERLRLLG	8	Unmodified	_HERLRLLG_					0	0	0		ENSG00000253304|ENST00000521452|TMEM200B	ENSG00000253304|ENST00000521452|TMEM200B	ENSG00000253304|ENST00000521452|TMEM200B	MSMS	OvCa9_classI_Rep2	2	497.3023376464844	2	497.30125	992.587947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.66	1	129.43	128.93	129.93	-0.22696								0	0	0	0.30129	1	12733	12733		25.45	3.7478	1				15792	9428	12832	12853	17558	17558					0.0913569101118128
HERQRRKKRRN	11	Unmodified	_HERQRRKKRRN_					0	0	0			REV__nc|ENSG00000153253|Q9NY46-4|SCN3A	REV__nc|ENSG00000153253|Q9NY46-4|SCN3A	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.2962646484375	3	521.976962	1562.90906	-0.99456	-0.00051914	-2.5511	-0.0013316	-3.5457	-0.0018508	522.3101456744447	29.228	0.3996	29.228	28.937	29.337	0					10	7	2	0	0	0	0.026525	1	1036	1036		6.6596	5.1366	1	52231	+		15793	20333	12833	12854	17559	17559					0.1501176137414859
HERRVRKRRAR	11	Unmodified	_HERRVRKRRAR_					0	0	0		ENSG00000162738|ENST00000368061|VANGL2	ENSG00000162738|ENST00000368061|VANGL2	ENSG00000162738|ENST00000368061|VANGL2	MULTI-MSMS	OvCa9_classI_Rep2	2	507.30889892578125	3	507.313685	1518.91923	-5.239	-0.0026578	-2.4753	-0.0012557	-7.7143	-0.0039136	507.3121827583452	162.21	1.6448	161.98	160.99	162.64	-0.22697					94	32	4	0	0	0	0.72573	2	16545	16545;16557		6.001	2.7897	1	66373			15794	6225	12834	12855	17560;17561	17560					0.18052369099382304
HERRVRKRRAR	11	Unmodified	_HERRVRKRRAR_					0	0	0		ENSG00000162738|ENST00000368061|VANGL2	ENSG00000162738|ENST00000368061|VANGL2	ENSG00000162738|ENST00000368061|VANGL2	MULTI-MSMS	OvCa9_classI_Rep3	3	507.6453552246094	3	507.313685	1518.91923	-7.2505	-0.0036783	0.10432	5.2923E-05	-7.1462	-0.0036254	507.31400483839707	163.92	1.3967	162.53	161.26	162.66	-1.3925					92	31	4	0	0	0	0.72582	1	14258	14258		1.523	0	1	78750			15795	6225	12834	12855	17562	17562					0.18052369099382304
HERRVRKRRAR	11	Unmodified	_HERRVRKRRAR_					0	0	0		ENSG00000162738|ENST00000368061|VANGL2	ENSG00000162738|ENST00000368061|VANGL2	ENSG00000162738|ENST00000368061|VANGL2	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.3123779296875	3	507.313685	1518.91923	-6.7742	-0.0034367	-0.79931	-0.0004055	-7.5736	-0.0038422	507.3132483041696	164.06	2.2283	162.43	160.34	162.57	-1.6336					157	61	4	0	0	0	0.72582	1	16189	16189		3.6191	2.0961	1	124560			15796	6225	12834	12855	17563	17563					0.18052369099382304
HESALVAVVLL	11	Unmodified	_HESALVAVVLL_					0	0	0			REV__ENST00000535819.1_3_12:27148336-27167248:-|nuORF	REV__ENST00000535819.1_3_12:27148336-27167248:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8432006835938	2	575.845156	1149.67576	-4.018	-0.0023138	0.54994	0.00031668	-3.4681	-0.0019971	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.68263	1	12259	12259		35.618	2.8059	1	445630	+		15797	16765	12835	12856	17564	17564					0.10690847091291289
HESASDKDSL	10	Unmodified	_HESASDKDSL_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	OvCa99_classI_Rep5	1	544.746337890625	2	544.746367	1087.47818	-0.40645	-0.00022141	-0.067686	-3.6871E-05	-0.47414	-0.00025829	544.7462093388966	29.661	0.60043	29.661	29.486	30.086	0					24	11	3	0	0	0	0.15491	1	1076	1076		101.25	21.54	1	471550			15798	3261	12836	12857	17565	17565					-0.06205823909317587
HESAVTGLSL	10	Unmodified	_HESAVTGLSL_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	MULTI-MSMS	OvCa9_classI_Rep2	2	507.2673034667969	2	507.266739	1012.51892	0.14965	7.5915E-05	-0.99858	-0.00050655	-0.84893	-0.00043063	507.26616198895925	86.781	2.5585	85.35	84.856	87.414	-1.4311					145	50	4	0	0	0	0.10076	11	7545	7527;7533;7539;7545;7551;7557;7563;7570;7577;7583;7589		113.41	27.346	1	1141800			15799	2758	12837	12858	17566;17567;17568;17569;17570;17571;17572;17573;17574;17575;17576	17569					0.013165622009523759
HESAVTGLSL	10	Unmodified	_HESAVTGLSL_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	MULTI-MSMS	OvCa9_classI_Rep3	3	507.26702880859375	2	507.266739	1012.51892	-1.2853	-0.00065199	1.089	0.00055239	-0.19635	-9.9601E-05	507.2672424550914	87.214	2.7627	85.038	84.38	87.143	-2.1768					150	54	5	0	0	0	0.086943	9	5248	5226;5230;5236;5242;5248;5254;5268;5273;5293		116.9	22.506	1	1838000			15800	2758	12837	12858	17577;17578;17579;17580;17581;17582;17583;17584;17585	17581					0.013165622009523759
HESAVTGLSL	10	Unmodified	_HESAVTGLSL_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.267333984375	2	507.266739	1012.51892	-2.4376	-0.0012365	0.66479	0.00033723	-1.7729	-0.00089931	507.26701545715287	87.855	2.4969	85.229	84.901	87.398	-2.6269					133	49	4	0	0	0	0.086943	5	7494	7470;7482;7494;7506;7519		116.9	16.992	1	2015000			15801	2758	12837	12858	17586;17587;17588;17589;17590	17588					0.013165622009523759
HESCSLSPL	9	Unmodified	_HESCSLSPL_					0	0	0		SLC30A3|p.L225Cfs*240|1|0.36|ENSG00000115194|chr2:27257258-27257258|G/-|frameshift_variant	SLC30A3|p.L225Cfs*240|1|0.36|ENSG00000115194|chr2:27257258-27257258|G/-|frameshift_variant	SLC30A3|p.L225Cfs*240|1|0.36|ENSG00000115194|chr2:27257258-27257258|G/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.2403564453125	2	486.726392	971.438231	-0.7622	-0.00037098	-3.2902	-0.0016014	-4.0523	-0.0019724	486.7246317958744	52.037	0.51789	52.037	51.829	52.347	0					17	11	2	0	0	0	0.027462	1	4086	4086		16.473	0	1	126090			15802	32830	12838	12859	17591	17591					-0.04863042113595384
HESGASIKI	9	Unmodified	_HESGASIKI_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	OvCa99_classI_Rep5	1	471.2562255859375	2	471.256174	940.497795	0.40243	0.00018965	-1.592	-0.00075026	-1.1896	-0.00056061	471.2555780774539	46.046	3.3213	46.046	45.71	49.031	0					185	75	4	0	0	0	0.022645	8	3256	3208;3232;3256;3286;3310;3336;3362;3385		143.89	31.808	1	102180000			15803	6523	12839	12860	17592;17593;17594;17595;17596;17597;17598;17599	17594					0.025165968920987325
HESGASIKI	9	Unmodified	_HESGASIKI_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	OvCa9_classI_Rep2	2	471.2557067871094	2	471.256174	940.497795	-1.3199	-0.00062201	1.0702	0.00050433	-0.2497	-0.00011767	471.25655204988306	51.241	1.5868	48.428	48.104	49.691	-2.8129					86	31	3	0	0	0	0.068524	4	3365	3347;3352;3365;3378		108.09	21.609	1	532950			15804	6523	12839	12860	17600;17601;17602;17603	17602					0.025165968920987325
HESGASIKI	9	Unmodified	_HESGASIKI_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.2562561035156	2	471.256174	940.497795	0.3871	0.00018242	-1.2963	-0.00061089	-0.9092	-0.00042847	471.25555214514605	51.57	1.4133	48.396	48.123	49.537	-3.1734					92	27	4	0	0	0	0.059253	6	3050	3029;3038;3050;3062;3076;3088		113.41	29.889	1	1926500			15805	6523	12839	12860	17604;17605;17606;17607;17608;17609	17606					0.025165968920987325
HESGDGAQDLQ	11	Unmodified	_HESGDGAQDLQ_					0	0	0		ENST00000274853.7_1_6:30654614-30654881:-|nuORF	ENST00000274853.7_1_6:30654614-30654881:-|nuORF	ENST00000274853.7_1_6:30654614-30654881:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.7461547851562	2	578.746899	1155.47924	-1.2504	-0.00072366	1.6468	0.00095306	0.39637	0.0002294	578.7477140950855	51.171	1.1059	47.998	47.771	48.877	-3.1734					47	21	4	0	0	0	0.41398	1	2986	2986		60.118	5.3419	1	327910			15806	10024	12840	12861	17610	17610					-0.09227609540425874
HESGDGAQDLQ	11	Unmodified	_HESGDGAQDLQ_					0	0	0		ENST00000274853.7_1_6:30654614-30654881:-|nuORF	ENST00000274853.7_1_6:30654614-30654881:-|nuORF	ENST00000274853.7_1_6:30654614-30654881:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	578.746899	1155.47924	-1.7392	-0.0010066	2.1527	0.0012459	0.41351	0.00023932	578.7480472075232	50.907	0.79301	48.113	47.877	48.67	-2.794	0.057675	0.00018867	NaN	60.118	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58217			15807	10024	12840	12861							-0.09227609540425874
HESGERTKL	9	Unmodified	_HESGERTKL_					0	0	0		ENSG00000107551|ENST00000340258|RASSF4;ENST00000489171.5_1_10:45466954-45488774:+|nuORF;nc|ENSG00000107551|Q9H2L5-3|RASSF4;nc|ENSG00000107551|Q9H2L5-2|RASSF4	ENSG00000107551|ENST00000340258|RASSF4	ENSG00000107551|ENST00000340258|RASSF4	MULTI-MSMS	OvCa99_classI_Rep5	1	528.7738037109375	2	528.775262	1055.53597	-0.84117	-0.00044479	0.69875	0.00036948	-0.14241	-7.5304E-05	528.7754925337637	25.967	0.79876	25.967	25.743	26.542	0					26	15	2	0	0	0	0.3076	1	631	631		62.107	1.8135	1	186160			15808	2603	12841	12862	17611	17611					0.0104248280676984
HESGHAIIA	9	Unmodified	_HESGHAIIA_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.741455078125	2	467.740691	933.466829	-0.75935	-0.00035518	0.82777	0.00038718	0.06842	3.2003E-05	467.74097373385223	42.105	1.6042	39.125	38.853	40.458	-2.9804					52	30	3	0	0	0	0.53957	1	1931	1931		38.806	6.8513	1	246920			15809	4511	12842	12863	17612	17612					-0.0025655642216406704
HESGHAIIA	9	Unmodified	_HESGHAIIA_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	467.740691	933.466829	0.906	0.00042377	-0.11014	-5.1519E-05	0.79585	0.00037225	467.7401711312563	41.911	1.3812	39.201	38.98	40.361	-2.7097	0.03807	-0.00074159	NaN	38.806	48	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60496			15810	4511	12842	12863							-0.0025655642216406704
HESKLLRRI	9	Unmodified	_HESKLLRRI_					0	0	0			REV__PRR5L|p.L89H|1|0.11|ENSG00000135362|chr11:36419275-36419275|T/A|missense_variant	REV__PRR5L|p.L89H|1|0.11|ENSG00000135362|chr11:36419275-36419275|T/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	576.3541870117188	2	576.354014	1150.69348	-0.5103	-0.00029411	-0.49695	-0.00028642	-1.0073	-0.00058053	576.3538085628105	72.001	4.4609	69.399	69.081	73.542	-2.6023					248	89	5	0	0	0	0.40667	1	3431	3431		51.335	3.6781	1	7516400	+		15811	29321	12843	12864	17613	17613					0.12415607136813378
HESLSHEL	8	Unmodified	_HESLSHEL_					0	0	0		ENSG00000121039|ENST00000240285|RDH10;PIK3R3-RDH10|1|fusion	ENSG00000121039|ENST00000240285|RDH10	ENSG00000121039|ENST00000240285|RDH10	MULTI-MSMS	OvCa99_classI_Rep5	1	476.2308044433594	2	476.230156	950.445759	-0.048205	-2.2957E-05	-0.034348	-1.6357E-05	-0.082553	-3.9314E-05	476.2300109381038	43.081	1.0697	43.081	42.839	43.909	0					47	24	3	0	0	0	0.42208	1	2815	2815		85.359	25.066	1	1841300			15812	3466	12844	12865	17614	17614					-0.031445665216665475
HESRQITQV	9	Unmodified	_HESRQITQV_					0	0	0		ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENSG00000149923|ENST00000279387|PPP4C;ENST00000567040.5_1_16:30087698-30094972:+|nuORF;nc|ENSG00000113575|P67775-2|PPP2CA;ENSG00000113575|ENST00000481195|PPP2CA;ENSG00000104695|ENST00000221138|PPP2CB;nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C;PPP6C|p.S197Qfs*34|2|0.15|ENSG00000119414|chr9:125153613-125153613|A/-|frameshift_variant;CDKL3-PPP2CA|1|fusion	ENST00000566749.5_1_16:30094185-30096380:+|nuORF;nc|ENSG00000119414|O00743-2|PPP6C;CDKL3-PPP2CA|1|fusion	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.2890014648438	2	549.288537	1096.56252	-1.1471	-0.00063008	1.0918	0.00059974	-0.055234	-3.0339E-05	549.2890097637712	42.016	1.3939	39.035	38.801	40.195	-2.9804					84	26	4	0	0	0	0.13482	3	1929	1918;1929;1949		87.754	23.459	1	589150			15813	5490;3362;214	12845	12866	17615;17616;17617	17616					0.01810171698070917
HESRQITQV	9	Unmodified	_HESRQITQV_					0	0	0		ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENSG00000149923|ENST00000279387|PPP4C;ENST00000567040.5_1_16:30087698-30094972:+|nuORF;nc|ENSG00000113575|P67775-2|PPP2CA;ENSG00000113575|ENST00000481195|PPP2CA;ENSG00000104695|ENST00000221138|PPP2CB;nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C;PPP6C|p.S197Qfs*34|2|0.15|ENSG00000119414|chr9:125153613-125153613|A/-|frameshift_variant;CDKL3-PPP2CA|1|fusion	ENST00000566749.5_1_16:30094185-30096380:+|nuORF;nc|ENSG00000119414|O00743-2|PPP6C;CDKL3-PPP2CA|1|fusion	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MATCH	OvCa9_classI_Rep2	2		2	549.288537	1096.56252	1.3212	0.00072573	-1.1972	-0.00065758	0.12406	6.8147E-05	549.2876983488337	41.812	1.3314	39.103	38.881	40.213	-2.7097	0.033647	-0.00094404	NaN	87.754	53	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122000			15814	5490;3362;214	12845	12866							0.01810171698070917
HESSSHHDL	9	Unmodified	_HESSSHHDL_					0	0	0		ENST00000606261.1_1_7:26224125-26225400:+|nuORF;ENSG00000050344|ENST00000056233|NFE2L3	ENST00000606261.1_1_7:26224125-26225400:+|nuORF	ENST00000606261.1_1_7:26224125-26225400:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	524.72607421875	2	524.725769	1047.43699	-0.56047	-0.00029409	0.61382	0.00032209	0.053347	2.7993E-05	524.7260088029487	23.137	0.55625	23.137	22.94	23.497	0					26	10	4	0	0	0	0.38529	1	288	288		53.351	5.4358	1	559250			15815	1178	12846	12867	17618	17618					-0.08483540158135838
HESTHPIAI	9	Unmodified	_HESTHPIAI_					0	0	0			REV__ENSG00000176641|ENST00000312828|RNF152	REV__ENSG00000176641|ENST00000312828|RNF152	MULTI-MSMS	OvCa9_classI_Rep3	3	502.76312255859375	2	502.761623	1003.50869	1.2962	0.00065166	1.9857	0.00099835	3.2819	0.00165	502.76247959947113	61.457	2.958	58.389	57.803	60.761	-3.0685					131	69	3	0	0	0	0.61208	1	2184	2184		30.504	0.6621	1	112640	+		15816	21961	12847	12868	17619	17619					0.007079992663648227
HETEEAIT	8	Unmodified	_HETEEAIT_					0	0	0		CHML|p.T511Sfs*6|1|0.06|ENSG00000203668|chr1:241634235-241634236|-/C|frameshift_variant;CHML|p.E537Gfs*15|1|0.28|ENSG00000203668|chr1:241634147-241634157|CTCGTTTATTT/-|frameshift_variant;ENSG00000203668|ENST00000366553|CHML;CHML|p.M153Ifs*21|1|0.04|ENSG00000203668|chr1:241635308-241635309|-/CCTTACATATATACCCA|frameshift_variant;CHML|p.P311Hfs*2|1|0.1|ENSG00000203668|chr1:241634835-241634836|-/T|frameshift_variant	CHML|p.T511Sfs*6|1|0.06|ENSG00000203668|chr1:241634235-241634236|-/C|frameshift_variant	CHML|p.T511Sfs*6|1|0.06|ENSG00000203668|chr1:241634235-241634236|-/C|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.2331237792969	2	465.214172	928.413791	-1.0602	-0.00049322	-3.4304	-0.0015959	-4.4906	-0.0020891	465.2130845558529	34.515	0.32718	34.515	34.351	34.679	0					8	6	2	0	0	0	0.028476	1	1660	1660		38.806	3.1879	1	29153			15817	234	12848	12869	17620	17620					-0.053279789954672196
HETGDIVL	8	Unmodified	_HETGDIVL_					0	0	0		tr|A0A553SS35|A0A553SS35_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_02395PE=4SV=1	tr|A0A553SS35|A0A553SS35_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_02395PE=4SV=1	tr|A0A553SS35|A0A553SS35_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_02395PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	442.2294921875	2	442.229625	882.444697	0.33081	0.00014629	-0.22766	-0.00010068	0.10315	4.5614E-05	442.2294221583654	34.996	0.75076	34.996	34.679	35.429	0					55	15	7	0	0	0	0.52992	1	1736	1736		74.517	0	1	448210			15818	34328	12849	12870	17621	17621					-0.0012278089058099795
HETGTKITI	9	Unmodified	_HETGTKITI_					0	0	0		nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENST00000496495.1_1_3:185393074-185393625:-|nuORF;ENST00000550858.1_1_12:42681476-42682067:+|nuORF	nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2	MULTI-MSMS	OvCa99_classI_Rep5	1	500.2786865234375	2	500.277106	998.53966	-0.43517	-0.0002177	-0.38701	-0.00019361	-0.82218	-0.00041132	500.27698986073153	48.787	1.0499	48.787	48.412	49.462	0					74	23	5	0	0	0	0.026923	2	3587	3587;3612		138.83	67.53	1	4352600			15819	1501	12850	12871	17622;17623	17622					0.04033152580609567
HETRLVEI	8	Unmodified	_HETRLVEI_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	OvCa9_classI_Rep2	2	498.77655029296875	2	498.777274	995.539994	0.12984	6.4761E-05	-1.137	-0.00056709	-1.0071	-0.00050233	498.7769421981592	66.393	2.4261	63.697	63.022	65.448	-2.6958					108	48	3	0	0	0	0.3457	5	5146	5143;5146;5158;5173;5178		98.629	8.2454	1	599630			15820	6091	12851	12872	17624;17625;17626;17627;17628	17625					0.04204572300466225
HETRLVEI	8	Unmodified	_HETRLVEI_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.77801513671875	2	498.777274	995.539994	0.78344	0.00039076	-1.2201	-0.00060857	-0.43668	-0.0002178	498.77661787126965	67.346	2.3106	63.856	63.442	65.753	-3.4902					107	46	4	0	0	0	0.62735	1	4960	4960		58.23	10.573	1	836140			15821	6091	12851	12872	17629	17629					0.04204572300466225
HETSKMKVL	9	Unmodified	_HETSKMKVL_					0	0	0		nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENSG00000179222|ENST00000326587|MAGED1;nc|ENSG00000067445|Q12816-4|TRO;nc|ENSG00000067445|Q12816-3|TRO;ENST00000492706.5_1_X:54953428-54957450:+|nuORF;ENST00000475183.1_1_X:54953428-54957230:+|nuORF;nc|ENSG00000067445|Q12816-2|TRO;nc|ENSG00000067445|Q12816-5|TRO;ENST00000494718.5_1_X:51643260-51645023:+|nuORF;ENSG00000067445|ENST00000173898|TRO	nc|ENSG00000179222|Q9Y5V3-2|MAGED1	nc|ENSG00000179222|Q9Y5V3-2|MAGED1	MSMS	OvCa9_classI_Rep4_	4	536.7947387695312	2	536.794609	1071.57467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.037	1	40.029	39.529	40.529	-3.0074								0	0	0	0.058381	1	2039	2039		76.774	23.423	1				15822	7811	12852	12873	17630	17630					0.0417407211691625
HETSLPVQL	9	Unmodified	_HETSLPVQL_					0	0	0		LRRK2|p.R1462Qfs*6|1|0.1|ENSG00000188906|chr12:40310497-40310498|CG/-|frameshift_variant;ENSG00000188906|ENST00000298910|LRRK2	LRRK2|p.R1462Qfs*6|1|0.1|ENSG00000188906|chr12:40310497-40310498|CG/-|frameshift_variant	LRRK2|p.R1462Qfs*6|1|0.1|ENSG00000188906|chr12:40310497-40310498|CG/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	512.2786865234375	2	512.277106	1022.53966	1.8651	0.00095543	0.47586	0.00024377	2.3409	0.0011992	512.2772420894438	92.574	1.2074	92.574	92.26	93.468	0					50	28	3	0	0	0	0.33652	1	10010	10010		58.782	3.2778	1	1795400			15823	8515	12853	12874	17631	17631					0.029291525806115715
HETSNINDF	9	Unmodified	_HETSNINDF_					0	0	0		ENSG00000135821|ENST00000331872|GLUL;ENST00000603996.1_1_5:151230113-151230284:+|nuORF	ENSG00000135821|ENST00000331872|GLUL	ENSG00000135821|ENST00000331872|GLUL	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.7368774414062	2	538.735803	1075.45705	-1.0049	-0.00054138	0.50929	0.00027437	-0.49561	-0.00026701	538.735984542756	62.396	2.4131	58.938	58.29	60.703	-3.4577					113	49	4	0	0	0	0.084918	1	4340	4340		101.25	15.893	1	819380			15824	4417	12854	12875	17632	17632					-0.0776578921820601
HETTWTIL	8	Unmodified	_HETTWTIL_					0	0	0		ENSG00000140983|ENST00000315082|RHOT2;ENST00000567589.1_1_16:720997-721204:+|nuORF;ENST00000568636.5_1_16:720997-722003:+|nuORF;ENST00000569358.5_1_16:720997-722561:+|nuORF;ENST00000602564.5_1_16:720997-722561:+|nuORF	ENSG00000140983|ENST00000315082|RHOT2	ENSG00000140983|ENST00000315082|RHOT2	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.7183837890625	2	500.758549	999.502546	-0.27207	-0.00013624	3.4331	0.0017191	3.161	0.0015829	501.26243225046227	40.991	0.35448	40.991	40.795	41.149	0					10	7	2	0	0	0	0.028476	1	2504	2504		26.796	13.837	1	60066			15825	4885	12855	12876	17633	17633					0.002774810348682877
HETTWTIL	8	Unmodified	_HETTWTIL_					0	0	0		ENSG00000140983|ENST00000315082|RHOT2;ENST00000567589.1_1_16:720997-721204:+|nuORF;ENST00000568636.5_1_16:720997-722003:+|nuORF;ENST00000569358.5_1_16:720997-722561:+|nuORF;ENST00000602564.5_1_16:720997-722561:+|nuORF	ENSG00000140983|ENST00000315082|RHOT2	ENSG00000140983|ENST00000315082|RHOT2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	500.758549	999.502546	0.060137	3.0114E-05	9.4824	0.0047484	9.5426	0.0047785	500.76261960609634	43.562	0.54493	40.852	40.708	41.253	-2.7097	-0.06939	0.0022936	NaN	26.796	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14418			15826	4885	12855	12876							0.002774810348682877
HETVPIMLVG	10	Unmodified	_HETVPIMLVG_					0	0	0		ENSG00000165105|ENST00000376447|RASEF	ENSG00000165105|ENST00000376447|RASEF	ENSG00000165105|ENST00000376447|RASEF	MULTI-MSMS	OvCa9_classI_Rep2	2	548.2950439453125	2	548.296985	1094.57942	-1.4493	-0.00079464	-1.4824	-0.00081281	-2.9317	-0.0016074	548.2961982412694	34.285	4.3001	31.575	31.119	35.419	-2.7097					197	86	6	0	0	0	0.64063	1	1341	1341		37.159	3.6435	1	2359300			15827	6520	12856	12877	17634	17634					0.035909562596543765
HEVAPAPLL	9	Unmodified	_HEVAPAPLL_					0	0	0			REV__nc|ENSG00000163349|Q86Z02-2|HIPK1	REV__nc|ENSG00000163349|Q86Z02-2|HIPK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.243896484375	2	473.77146	945.528367	-0.22884	-0.00010842	2.8787	0.0013638	2.6498	0.0012554	473.7723133805993	47.888	0.30326	47.888	47.681	47.984	0					11	6	2	0	0	0	0.027462	1	3466	3466		50.025	18.07	1	80961	+		15828	20829	12857	12878	17635	17635					0.05342375277132305
HEVGARLP	8	Unmodified	_HEVGARLP_					0	0	0		ENST00000258796.11_1_7:2702399-2703008:+|nuORF	ENST00000258796.11_1_7:2702399-2703008:+|nuORF	ENST00000258796.11_1_7:2702399-2703008:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	439.74615478515625	2	439.745776	877.477	0.49272	0.00021667	-0.53023	-0.00023317	-0.037517	-1.6498E-05	439.74543772206977	59.294	2.4476	59.294	59.011	61.458	0					121	60	4	0	0	0	0.60486	3	5083	5083;5110;5141		62.978	15.271	1	4968400			15829	9838	12858	12879	17636;17637;17638	17636					0.03336051303097065
HEVIRNEDIR	10	Unmodified	_HEVIRNEDIR_					0	0	0			REV__ENST00000506712.1_1_5:32710768-32783175:+|nuORF	REV__ENST00000506712.1_1_5:32710768-32783175:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	640.77880859375	2	640.838925	1279.6633	0.28741	0.00018418	2.8733	0.0018413	3.1607	0.0020255	640.8405403649776	109.45	1.0488	107.73	107.47	108.52	-1.7256					43	19	3	0	0	0	0.02709	1	10079	10079		36.447	14.761	1	127280	+		15830	18149	12859	12880	17639	17639					0.034652036809120546
HEVIRNEDIR	10	Unmodified	_HEVIRNEDIR_					0	0	0			REV__ENST00000506712.1_1_5:32710768-32783175:+|nuORF	REV__ENST00000506712.1_1_5:32710768-32783175:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	640.838925	1279.6633	-0.76084	-0.00048757	4.0002	0.0025635	3.2394	0.0020759	640.840928594193	107.79	1.2202	107.5	107.08	108.3	-0.29281	-0.14018	0.0013691	NaN	36.447	73	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116540	+		15831	18149	12859	12880							0.034652036809120546
HEVIRNEDIR	10	Unmodified	_HEVIRNEDIR_					0	0	0			REV__ENST00000506712.1_1_5:32710768-32783175:+|nuORF	REV__ENST00000506712.1_1_5:32710768-32783175:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	640.838925	1279.6633	-0.20387	-0.00013065	2.7012	0.0017311	2.4974	0.0016004	640.8406661354284	108.89	1.3512	107.69	107.36	108.72	-1.1978	0.052005	-0.00029577	NaN	36.447	40	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103230	+		15832	18149	12859	12880							0.034652036809120546
HEVKATLEQ	9	Unmodified	_HEVKATLEQ_					0	0	0			REV__tr|A0A553SG63|A0A553SG63_NIACILactonasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10260PE=3SV=1	REV__tr|A0A553SG63|A0A553SG63_NIACILactonasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10260PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.779541015625	2	527.780013	1053.54547	-1.6804	-0.00088687	1.409	0.00074365	-0.27135	-0.00014321	527.7806136821357	41.981	2.3197	39.001	38.696	41.016	-2.9804					82	44	3	0	0	0	0.074342	1	1923	1923		104.75	3.1458	1	349090	+		15833	29665	12860	12881	17640	17640					0.02084251092287559
HEVKATLEQ	9	Unmodified	_HEVKATLEQ_					0	0	0			REV__tr|A0A553SG63|A0A553SG63_NIACILactonasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10260PE=3SV=1	REV__tr|A0A553SG63|A0A553SG63_NIACILactonasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10260PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	527.780013	1053.54547	0.6167	0.00032548	-0.88044	-0.00046468	-0.26374	-0.0001392	527.7794209081167	41.812	1.1835	39.103	38.881	40.065	-2.7097	0.050946	-0.0010629	NaN	104.75	42	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65144	+		15834	29665	12860	12881							0.02084251092287559
HEVKEAQTL	9	Unmodified	_HEVKEAQTL_					0	0	0		MACF1-CMTM4|1|fusion;MACF1-CMTM4|2|fusion;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1	MACF1-CMTM4|1|fusion;nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OvCa99_classI_Rep5	1	527.7794799804688	2	527.780013	1053.54547	-1.0684	-0.00056386	-0.32186	-0.00016987	-1.3902	-0.00073373	527.7798376662829	36.554	1.7178	36.554	36.351	38.069	0					86	37	5	0	0	0	0.0086488	2	1949	1926;1949		176.09	52.007	1	5408600			15835	15005;14812	12861	12882	17641;17642	17642					0.02084251092287559
HEVKEAQTL	9	Unmodified	_HEVKEAQTL_					0	0	0		MACF1-CMTM4|1|fusion;MACF1-CMTM4|2|fusion;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1	MACF1-CMTM4|1|fusion;nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.7794189453125	2	527.780013	1053.54547	-1.6804	-0.00088687	1.409	0.00074365	-0.27135	-0.00014321	527.7806136821357	41.981	2.3197	39.001	38.696	41.016	-2.9804					82	44	3	0	0	0	0.16562	1	1912	1912		82.241	13.454	1	349090			15836	15005;14812	12861	12882	17643	17643					0.02084251092287559
HEVKERHIQL	10	Unmodified	_HEVKERHIQL_					0	0	0		GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant;ENSG00000131459|ENST00000253778|GFPT2;GFPT2|p.K136Qfs*18|1|0.12|ENSG00000131459|chr5:180330828-180330829|-/TG|frameshift_variant	GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant	GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	644.8593139648438	2	644.85966	1287.70477	-0.63084	-0.0004068	0.078209	5.0434E-05	-0.55263	-0.00035637	644.8596578969704	37.228	0.6447	37.228	37.023	37.668	0					24	13	3	0	0	0	0.39761	1	2030	2030		65.157	19.185	1	220870			15837	4066	12862	12883	17644	17644					0.07242384440291971
HEVKLGMQDK	10	Unmodified	_HEVKLGMQDK_					0	0	0		ENST00000427076.5_1_7:43992756-44009363:-|nuORF	ENST00000427076.5_1_7:43992756-44009363:-|nuORF	ENST00000427076.5_1_7:43992756-44009363:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	592.7752075195312	2	592.808248	1183.60194	2.5717	0.0015245	0.98409	0.00058337	3.5557	0.0021079	592.808882555475	108.1	0.51027	108.1	107.9	108.41	0					14	11	2	0	0	0	0.026891	1	12190	12190		24.519	0	1	253680			15838	11749	12863	12884	17645	17645					0.017485556573092254
HEVLLEHLQ	9	Unmodified	_HEVLLEHLQ_					0	0	0		ENST00000534093.5_3_11:62379321-62382308:+|nuORF;ENSG00000149489|ENST00000278833|ROM1	ENST00000534093.5_3_11:62379321-62382308:+|nuORF	ENST00000534093.5_3_11:62379321-62382308:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.2683715820312	2	559.303655	1116.59276	-0.49708	-0.00027802	-4.4564	-0.0024925	-4.9535	-0.0027705	559.3011749703081	36.908	0.50007	36.908	36.751	37.251	0					22	10	3	0	0	0	0.027462	1	1970	1970		37.159	5.6293	1	218810			15839	5463	12864	12885	17646	17646					0.03912530363277256
HEVMEQQTL	9	Unmodified	_HEVMEQQTL_					0	0	0		ENSG00000104738|ENST00000649973|MCM4;MCM4|p.A741Lfs*8|1|0.32|ENSG00000104738|chr8:47974817-47974818|-/TT|frameshift_variant	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	OvCa99_classI_Rep5	1	557.76513671875	2	557.763506	1113.51246	0.15939	8.89E-05	-0.68027	-0.00037943	-0.52088	-0.00029053	557.7630063165797	60.369	1.6669	60.369	59.918	61.585	0					74	39	3	0	0	0	0.022645	1	5261	5261		143.89	0	1	5023300			15840	2389	12865	12886	17647	17647					-0.03975699022066692
HEVPEKTSI	9	Unmodified	_HEVPEKTSI_					0	0	0		nc|ENSG00000148019|Q5JTW2|CEP78;ENSG00000148019|ENST00000643273|CEP78;nc|ENSG00000148019|Q5JTW2-5|CEP78;nc|ENSG00000148019|Q5JTW2-2|CEP78	nc|ENSG00000148019|Q5JTW2|CEP78	nc|ENSG00000148019|Q5JTW2|CEP78	MULTI-MSMS	OvCa99_classI_Rep5	1	520.274658203125	2	520.274564	1038.53457	-0.99554	-0.00051796	0.91155	0.00047426	-0.083996	-4.3701E-05	520.2748434938977	41.486	0.87295	41.486	41.195	42.068	0					50	19	4	0	0	0	0.16264	1	2600	2600		82.75	13.964	1	743910			15841	5383	12866	12887	17648	17648					0.016848487180141092
HEVPSGNSL	9	Unmodified	_HEVPSGNSL_					0	0	0		SH3KBP1|p.P255Qfs*20|1|0.01|ENSG00000147010|chrX:19645438-19645438|G/-|frameshift_variant;SH3KBP1|p.D256Afs*27|1|0.03|ENSG00000147010|chrX:19645435-19645436|-/ATTCTCCCACATGCTTAGGCAAG|frameshift_variant;nc|ENSG00000147010|Q96B97-2|SH3KBP1;SH3KBP1|p.S575Gfs*71|1|0.08|ENSG00000147010|chrX:19542094-19542095|-/TTGATTCTCTCAAGAAACAGCTAACTGATCC|frameshift_variant;ENSG00000147010|ENST00000397821|SH3KBP1;ENST00000432234.5_1_X:19764461-19765791:-|nuORF	SH3KBP1|p.P255Qfs*20|1|0.01|ENSG00000147010|chrX:19645438-19645438|G/-|frameshift_variant	SH3KBP1|p.P255Qfs*20|1|0.01|ENSG00000147010|chrX:19645438-19645438|G/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	470.2322998046875	2	470.230156	938.445759	-0.52998	-0.00024921	0.54701	0.00025722	0.017031	8.0085E-06	470.23025296747693	49.392	0.95544	49.392	49.075	50.031	0					45	21	3	0	0	0	0.14998	1	3685	3685		84.916	1.6283	1	1514100			15842	5323	12867	12888	17649	17649					-0.025925665216618654
HEVRIQPSL	9	Unmodified	_HEVRIQPSL_					0	0	0		nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38;ENST00000502571.1_1_5:147784249-147790417:+|nuORF	nc|ENSG00000145868|Q6PIJ6-3|FBXO38	nc|ENSG00000145868|Q6PIJ6-3|FBXO38	MULTI-MSMS	OvCa99_classI_Rep5	1	539.8048095703125	2	539.803823	1077.59309	0.16926	9.1368E-05	0.59023	0.00031861	0.75949	0.00040998	539.8042722246879	63.197	2.0961	63.197	62.976	65.072	0					86	51	4	0	0	0	0.14855	1	5672	5672		85.161	23.053	1	3060400			15843	5250	12868	12889	17650	17650					0.0573995008314796
HEVRNPLTS	9	Unmodified	_HEVRNPLTS_					0	0	0		tr|A0A553SLJ5|A0A553SLJ5_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_20745PE=4SV=1	tr|A0A553SLJ5|A0A553SLJ5_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_20745PE=4SV=1	tr|A0A553SLJ5|A0A553SLJ5_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_20745PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	526.77734375	2	526.777805	1051.54106	-1.403	-0.00073905	0.93347	0.00049173	-0.46949	-0.00024732	526.7781858568062	52.709	2.3292	49.895	49.492	51.822	-2.8139					109	46	4	0	0	0	0.38529	1	3532	3532		53.351	0	1	428250			15844	33730	12869	12890	17651	17651					0.0173478666936262
HEVTMSYPM	9	Unmodified	_HEVTMSYPM_					0	0	0		ENSG00000181523|ENST00000326317|SGSH	ENSG00000181523|ENST00000326317|SGSH	ENSG00000181523|ENST00000326317|SGSH	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.3455810546875	2	547.735902	1093.45725	-0.71748	-0.00039299	4.2854	0.0023473	3.568	0.0019543	547.7382649769316	36.181	0.41201	36.181	35.939	36.351	0					12	8	2	0	0	0	0.027462	1	1894	1894		50.025	20.875	1	30135			15845	7935	12870	12891	17652	17652					-0.08573828814201079
HEWKHWLPRL	10	Unmodified	_HEWKHWLPRL_					0	0	0		ENST00000545247.6_1_11:18505612-18548363:-|nuORF	ENST00000545247.6_1_11:18505612-18548363:-|nuORF	ENST00000545247.6_1_11:18505612-18548363:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	468.7607116699219	3	467.922801	1400.74657	-0.73678	-0.00034476	3.6373	0.001702	2.9005	0.0013572	467.9244421489341	57.276	0.94354	54.484	54.129	55.072	-2.792					41	18	3	0	0	0	0.027325	1	4038	4038		16.007	0	1	76362			15846	13520	12871	12892	17653	17653					0.062229849194409326
HEWMKSEEL	9	Unmodified	_HEWMKSEEL_					0	0	0		ENST00000582168.5_1_17:72769619-72771837:-|nuORF;ENST00000582993.5_1_17:72769619-72771837:-|nuORF;ENST00000582118.1_1_17:72769619-72771837:-|nuORF;ENST00000582359.5_1_17:72768918-72770027:-|nuORF;ENST00000583834.5_1_17:72768345-72771837:-|nuORF;ENST00000577428.5_1_17:72768529-72772472:-|nuORF;ENST00000585240.5_1_17:72768620-72771837:-|nuORF;ENST00000583689.5_1_17:72768918-72771837:-|nuORF;ENST00000578798.5_1_17:72768345-72772472:-|nuORF;nc|ENSG00000109065|Q9BTE0-2|NAT9;ENSG00000109065|ENST00000357814|NAT9	ENST00000582168.5_1_17:72769619-72771837:-|nuORF	ENST00000582168.5_1_17:72769619-72771837:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	594.7730712890625	2	594.771331	1187.52811	-0.17947	-0.00010674	0.51111	0.000304	0.33165	0.00019725	594.7713978514207	64.484	0.62164	64.484	64.253	64.875	0					32	14	3	0	0	0	0.16264	1	5864	5864		82.75	27.974	1	1353400			15847	2694	12872	12893	17654	17654					-0.058154125050123184
HEYFHEPN	8	Unmodified	_HEYFHEPN_					0	0	0		ENSG00000002587|ENST00000002596|HS3ST1	ENSG00000002587|ENST00000002596|HS3ST1	ENSG00000002587|ENST00000002596|HS3ST1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.7285766601562	2	536.727781	1071.44101	1.055	0.00056626	-0.045356	-2.4344E-05	1.0097	0.00054192	536.7276037559034	83.315	0.88666	83.315	83.078	83.965	0					39	20	3	0	0	0	0.61436	1	8666	8666		60.972	13.315	1	2302800			15848	811	12873	12894	17655	17655					-0.09185450664426753
HEYSKQALL	9	Unmodified	_HEYSKQALL_					0	0	0			REV__nc|ENSG00000188517|Q9BXS0-3|COL25A1	REV__nc|ENSG00000188517|Q9BXS0-3|COL25A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.7921142578125	2	544.790381	1087.56621	0.24665	0.00013437	3.9196	0.0021354	4.1662	0.0022697	544.7919083089957	32.982	1.5883	30.286	29.903	31.492	-2.6954					65	31	4	0	0	0	0.56889	1	832	832		35.618	1.4457	1	40310	+		15849	22715	12874	12895	17656	17656					0.025928414719373905
HEYTPLDTL	9	Unmodified	_HEYTPLDTL_					0	0	0			REV__ENSG00000165688|ENST00000371717|PMPCA	REV__ENSG00000165688|ENST00000371717|PMPCA	MULTI-MSMS	OvCa9_classI_Rep2	2	544.7649536132812	2	544.766571	1087.51859	-1.4706	-0.00080111	-2.5931	-0.0014126	-4.0636	-0.0022137	544.7650611087879	51.984	1.5814	49.171	48.799	50.38	-2.8129					70	31	3	0	0	0	0.38529	1	3463	3463		53.351	2.1588	1	590080	+		15850	21108	12875	12896	17657	17657					-0.021668575189096373
HFCRGIPMV	9	Unmodified	_HFCRGIPMV_					0	0	0		ENSG00000139725|ENST00000267205|RHOF;nc|ENSG00000139725|Q9HBH0-2|RHOF	ENSG00000139725|ENST00000267205|RHOF	ENSG00000139725|ENST00000267205|RHOF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.294189453125	2	530.264964	1058.51538	0.74443	0.00039475	-2.1751	-0.0011534	-1.4307	-0.00075864	530.2636375378776	158.84	0.48082	158.84	158.61	159.09	0					15	9	2	0	0	0	0.027462	1	18590	18590		25.45	0	1	43833			15851	4800	12876	12897	17658	17658					-0.01154102378245625
HFDFEEEDV	9	Unmodified	_HFDFEEEDV_					0	0	0		nc|ENSG00000185989|Q14644-2|RASA3;ENSG00000185989|ENST00000334062|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	582.8355712890625	2	583.735468	1165.45638	-2.9195	-0.0017042	-1.854	-0.0010822	-4.7735	-0.0027864	584.2363719287696	125.82	0.63719	124.41	124.19	124.83	-1.4143					22	12	2	0	0	0	0.027462	1	12008	12008		30.504	0	1	19219			15852	8307	12877	12898	17659	17659					-0.11972628657917994
HFFHLWNDFAY	11	Unmodified	_HFFHLWNDFAY_					0	0	0		ENSG00000103888|ENST00000394685|CEMIP	ENSG00000103888|ENST00000394685|CEMIP	ENSG00000103888|ENST00000394685|CEMIP	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.82183837890625	3	499.56305	1495.66732	-0.51299	-0.00025627	-0.69413	-0.00034676	-1.2071	-0.00060303	499.56280345850945	48.095	0.43122	48.095	47.941	48.372	0					14	9	2	0	0	0	0.026296	1	3512	3512		15.333	2.9003	1	385460			15853	2343	12878	12899	17660	17660					-0.060687068253400867
HFIAEHYMF	9	Unmodified	_HFIAEHYMF_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1;ENST00000498813.1_1_1:224377853-224378832:+|nuORF	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	OvCa99_classI_Rep5	1	598.276611328125	2	597.773677	1193.5328	2.1594	0.0012908	0.1008	6.0254E-05	2.2602	0.0013511	597.7734859161344	91.892	1.4704	91.892	91.582	93.053	0					88	34	4	0	0	0	0.098892	2	9907	9907;9929		97.473	46.28	1	2719700			15854	5090	12879	12900	17661;17662	17661					-0.05622483571619341
HFIAKVLPSE	10	Unmodified	_HFIAKVLPSE_					0	0	0			REV__ENSG00000198911|ENST00000361204|SREBF2	REV__ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	OvCa9_classI_Rep2	2	570.821533203125	2	570.824224	1139.63389	-1.1076	-0.00063223	-3.6058	-0.0020583	-4.7133	-0.0026905	570.8223947094398	83.611	2.5243	82.012	81.415	83.939	-1.5988					150	50	5	0	0	0	0.64063	1	7189	7189		37.159	0.71236	1	939080	+		15855	23092	12880	12901	17663	17663					0.06966291402750358
HFIQRILLLFW	11	Unmodified	_HFIQRILLLFW_					0	0	0			REV__ENSG00000165338|ENST00000298068|HECTD2	REV__ENSG00000165338|ENST00000298068|HECTD2	MULTI-MSMS	OvCa9_classI_Rep3	3	495.9581298828125	3	495.962485	1484.86563	-6.9468	-0.0034453	-0.64572	-0.00032025	-7.5925	-0.0037656	495.96210445138047	163.05	2.2058	161.66	160.17	162.38	-1.3926					163	48	5	0	0	0	0.72568	1	14281	14281		6.6596	0.33873	1	227040	+		15856	21080	12881	12902	17664	17664					0.14258758824325923
HFLFGVHFT	9	Unmodified	_HFLFGVHFT_					0	0	0			REV__tr|A0A553SS47|A0A553SS47_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_02420PE=4SV=1	REV__tr|A0A553SS47|A0A553SS47_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_02420PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.7879638671875	2	552.784902	1103.55525	0.71032	0.00039265	4.3354	0.0023966	5.0458	0.0027892	552.7870597547582	37.73	0.99457	34.837	34.591	35.586	-2.8925					48	19	3	0	0	0	0.44294	1	1413	1413		47.916	1.9636	1	112010	+		15857	30804	12882	12903	17665	17665					0.007614838883228003
HFLFGVHFT	9	Unmodified	_HFLFGVHFT_					0	0	0			REV__tr|A0A553SS47|A0A553SS47_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_02420PE=4SV=1	REV__tr|A0A553SS47|A0A553SS47_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_02420PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	552.784902	1103.55525	-1.1882	-0.0006568	6.3292	0.0034987	5.141	0.0028419	552.7882183781932	37.703	0.73863	34.993	34.83	35.568	-2.7097	0.078006	0.001491	NaN	47.916	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35500	+		15858	30804	12882	12903							0.007614838883228003
HFLFGVHFT	9	Unmodified	_HFLFGVHFT_					0	0	0			REV__tr|A0A553SS47|A0A553SS47_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_02420PE=4SV=1	REV__tr|A0A553SS47|A0A553SS47_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_02420PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	552.784902	1103.55525	0.71032	0.00039265	4.3354	0.0023966	5.0458	0.0027892	552.7870597547582	37.73	0.99457	34.837	34.591	35.586	-2.8925	-0.078006	-0.00071329	NaN	47.916	48	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112010	+		15859	30804	12882	12903							0.007614838883228003
HFLLPPLI	8	Unmodified	_HFLLPPLI_					0	0	0		ENSG00000176922|ENST00000322101|OR51S1	ENSG00000176922|ENST00000322101|OR51S1	ENSG00000176922|ENST00000322101|OR51S1	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.2982482910156	2	475.297114	948.579674	0.0763	3.6265E-05	2.8946	0.0013758	2.9709	0.0014121	475.29833051678384	144.12	1.1973	142.69	142.11	143.31	-1.4357					39	22	2	0	0	0	0.7543	1	14096	14096		24.504	0	1	18856			15860	7638	12883	12904	17666	17666					0.10332744041841124
HFLVLLPFF	9	Unmodified	_HFLVLLPFF_					0	0	0			REV__SMIM21|p.T54P|1|0.05|ENSG00000206026|chr18:75418886-75418886|T/G|missense_variant	REV__SMIM21|p.T54P|1|0.05|ENSG00000206026|chr18:75418886-75418886|T/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.8327026367188	2	566.83132	1131.64809	0.55128	0.00031248	2.2746	0.0012893	2.8259	0.0016018	566.8324579540893	20.42	0.84666	19.081	18.851	19.697	-1.3386					29	16	2	0	0	0	0.53728	1	47	47		39.021	8.5179	1	86401	+		15861	29377	12884	12905	17667	17667					0.08752988621699842
HFNLTLFS	8	Unmodified	_HFNLTLFS_					0	0	0		ENSG00000133962|ENST00000256343|CATSPERB	ENSG00000133962|ENST00000256343|CATSPERB	ENSG00000133962|ENST00000256343|CATSPERB	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.756591796875	2	489.75581	977.497067	0.96491	0.00047257	-0.20521	-0.0001005	0.7597	0.00037207	489.75553304007275	33.559	2.5913	30.771	30.259	32.85	-2.7881					111	51	3	0	0	0	0.73494	1	940	940		34.173	5.023	1	83915			15862	4245	12885	12906	17668	17668					0.007418022430442761
HFRCILLMHA	10	Unmodified	_HFRCILLMHA_					0	0	0			REV__ENSG00000087128|ENST00000305363|TMPRSS11E	REV__ENSG00000087128|ENST00000305363|TMPRSS11E	MSMS	OvCa99_classI_Rep5	1	620.8292846679688	2	620.825721	1239.63689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.16	1	119.16	118.66	119.66	0								0	0	0	0.14661	1	13672	13672		50.025	0.48849	1		+		15863	17158	12886	12907	17669	17669					0.02665519984270759
HFRPIFTKVPR	11	Unmodified	_HFRPIFTKVPR_					0	0	0		ENSG00000165164|ENST00000378653|CFAP47;nc|ENSG00000165164|Q6ZTR5-2|CFAP47;nc|ENSG00000165164|Q6ZTR5-1|CFAP47;nc|ENSG00000165164|Q6ZTR5-6|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	MULTI-MSMS	OvCa9_classI_Rep3	3	466.6080017089844	3	466.610334	1396.80917	-6.6027	-0.0030809	1.5115	0.00070527	-5.0912	-0.0023756	466.61096806232865	159.04	3.2002	157.77	156.69	159.89	-1.267					192	69	4	0	0	0	0.72497	1	13746	13746		15.921	1.8346	1	106530			15864	6529	12887	12908	17670	17670					0.12664130987627686
HFRYRRGKVKR	11	Unmodified	_HFRYRRGKVKR_					0	0	0			REV__ENST00000460357.1_1_12:111082772-111083018:+|nuORF	REV__ENST00000460357.1_1_12:111082772-111083018:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	501.63372802734375	3	501.635765	1501.88547	-7.1576	-0.0035905	3.7637	0.001888	-3.3939	-0.0017025	501.63774554440306	163.54	2.3462	162.14	160.37	162.72	-1.3925					135	52	3	0	0	0	0.72573	1	14261	14261		6.001	2.5923	1	91935	+		15865	26080	12888	12909	17671	17671					0.15459947607610047
HFSLLSFTL	9	Unmodified	_HFSLLSFTL_					0	0	0			REV__ENST00000454679.6_2_10:19569053-19613005:+|nuORF	REV__ENST00000454679.6_2_10:19569053-19613005:+|nuORF	MSMS	OvCa9_classI_Rep2	2	532.7899169921875	2	532.792392	1063.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.76	1	104.19	103.69	104.69	-0.57639								0	0	0	0.15766	1	9709	9709		63.306	1.1989	1		+		15866	26007	12889	12910	17672	17672					0.04098930965665204
HFSTKVLGI	9	Unmodified	_HFSTKVLGI_					0	0	0		ENSG00000179832|ENST00000326134|MROH1	ENSG00000179832|ENST00000326134|MROH1	ENSG00000179832|ENST00000326134|MROH1	MULTI-MSMS	OvCa9_classI_Rep3	3	501.29107666015625	2	501.292559	1000.57057	-1.4695	-0.00073667	-2.6975	-0.0013522	-4.167	-0.0020889	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.65476	1	11248	11248		25.45	1.2474	1	97838			15867	7843	12890	12911	17673	17673					0.07030350685522535
HFSTSHLVSH	10	Unmodified	_HFSTSHLVSH_					0	0	0		ZNF462|p.Q1930Rfs*3|1|0.04|ENSG00000148143|chr9:106929701-106929701|A/-|frameshift_variant;ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;nc|ENSG00000148143|Q96JM2-2|ZNF462	ZNF462|p.Q1930Rfs*3|1|0.04|ENSG00000148143|chr9:106929701-106929701|A/-|frameshift_variant	ZNF462|p.Q1930Rfs*3|1|0.04|ENSG00000148143|chr9:106929701-106929701|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	576.2830200195312	2	576.283254	1150.55196	-0.36753	-0.0002118	-4.0859	-0.0023547	-4.4535	-0.0025665	576.2805925267644	65.174	0.71004	65.174	64.955	65.665	0					53	17	4	0	0	0	0.59703	1	5966	5966		42.396	1.8235	1	3432400			15868	5386	12891	12912	17674	17674					-0.017298109563171238
HFTKTVVITAG	11	Unmodified	_HFTKTVVITAG_					0	0	0		tr|A0A553SJI3|A0A553SJI3_NIACIFerredoxin--NADPreductaseOS=NialliacirculansOX=1397GN=CEQ21_16835PE=3SV=1	tr|A0A553SJI3|A0A553SJI3_NIACIFerredoxin--NADPreductaseOS=NialliacirculansOX=1397GN=CEQ21_16835PE=3SV=1	tr|A0A553SJI3|A0A553SJI3_NIACIFerredoxin--NADPreductaseOS=NialliacirculansOX=1397GN=CEQ21_16835PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	587.3323974609375	2	587.334956	1172.65536	-0.811	-0.00047633	-2.405	-0.0014125	-3.216	-0.0018889	587.3334900830839	39.733	0.8304	39.733	39.463	40.294	0					43	18	4	0	0	0	0.59615	1	2371	2371		45.022	4.244	1	3852000			15869	33507	12892	12913	17675	17675					0.07593676431474705
HFTSIKSLL	9	Unmodified	_HFTSIKSLL_					0	0	0		ENSG00000163563|ENST00000368141|MNDA;ENST00000491210.1_1_1:158811943-158812264:+|nuORF	ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	MULTI-MSMS	OvCa9_classI_Rep2	2	523.296875	2	523.305667	1044.59678	-0.69596	-0.0003642	-3.2951	-0.0017244	-3.9911	-0.0020886	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.69123	1	13662	13662		20.947	1.8434	1	130240			15870	6327	12893	12914	17676	17676					0.0762661985700106
HFVCLYRSAPP	11	Unmodified	_HFVCLYRSAPP_					0	0	0		ENST00000300456.4_1_9:131103041-131107595:+|nuORF	ENST00000300456.4_1_9:131103041-131107595:+|nuORF	ENST00000300456.4_1_9:131103041-131107595:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	645.3265991210938	2	645.326608	1288.63866	-0.5958	-0.00038449	0.25393	0.00016387	-0.34187	-0.00022062	645.3267068965904	99.968	2.6534	97.643	97.263	99.917	-2.3253					142	52	6	0	0	0	0.69455	1	8961	8961		31.53	2.3598	1	2886900			15871	10173	12894	12915	17677	17677					0.005888522738814572
HFWRKSLRKL	10	Unmodified	_HFWRKSLRKL_					0	0	0		ENSG00000149968|ENST00000299855|MMP3	ENSG00000149968|ENST00000299855|MMP3	ENSG00000149968|ENST00000299855|MMP3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.7518615722656	3	457.610446	1369.80951	0.31852	0.00014576	-1.0948	-0.00050097	-0.77624	-0.00035521	457.6098290616198	60.627	0.59609	57.197	56.898	57.494	-3.43					19	11	2	0	0	0	0.027193	1	4138	4138		29.17	0.59333	1	25070			15872	5495	12895	12916	17678	17678					0.1393955070748234
HFWRKSLRKL	10	Unmodified	_HFWRKSLRKL_					0	0	0		ENSG00000149968|ENST00000299855|MMP3	ENSG00000149968|ENST00000299855|MMP3	ENSG00000149968|ENST00000299855|MMP3	MULTI-MATCH	OvCa9_classI_Rep2	2		3	457.610446	1369.80951	0.33134	0.00015162	-1.3545	-0.00061983	-1.0231	-0.0004682	457.9443051800617	59.802	0.61849	57.032	56.83	57.448	-2.7702	-0.082609	-0.00020536	NaN	38.754	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30062			15873	5495	12895	12916							0.1393955070748234
HGAGLVQLLH	10	Unmodified	_HGAGLVQLLH_					0	0	0			REV__ENST00000390665.8_1_X:306258-308059:-|nuORF	REV__ENST00000390665.8_1_X:306258-308059:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	522.80126953125	2	522.801083	1043.58761	-0.60564	-0.00031663	0.2391	0.000125	-0.36654	-0.00019163	522.8010421976496	33.203	1.3901	30.493	30.272	31.662	-2.7097					70	27	4	0	0	0	0.64063	1	1199	1199		37.159	2.9866	1	560900	+		15874	25236	12896	12917	17679	17679					0.0675627129132863
HGAINECLRKR	11	Unmodified	_HGAINECLRKR_					0	0	0			REV__ENSG00000121691|ENST00000241052|CAT	REV__ENSG00000121691|ENST00000241052|CAT	MULTI-MSMS	OvCa99_classI_Rep5	1	432.9032287597656	3	432.903301	1295.68807	-0.19328	-8.3672E-05	0.30049	0.00013008	0.10721	4.6412E-05	432.9034102939429	37.785	2.1137	37.785	37.391	39.505	0					112	46	5	0	0	0	0.66539	1	2084	2084		38.714	3.5359	1	2384200	+		15875	18551	12897	12918	17680	17680					0.05205560282638544
HGAQFHKRV	9	Unmodified	_HGAQFHKRV_					0	0	0			REV__ENSG00000075643|ENST00000261326|MOCOS	REV__ENSG00000075643|ENST00000261326|MOCOS	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.2979736328125	2	540.296499	1078.57845	-0.33982	-0.0001836	2.4719	0.0013356	2.1321	0.001152	540.2979670747679	38.277	3.0652	35.351	34.907	37.972	-2.9264					190	60	5	0	0	0	0.42057	3	1525	1501;1513;1525		50.025	5.3719	1	3652900	+		15876	16977	12898	12919	17681;17682;17683	17683					0.04229922725653523
HGCFDIFTT	9	Unmodified	_HGCFDIFTT_					0	0	0		ENST00000575132.5_1_17:80888388-80890612:+|nuORF;nc|ENSG00000141556|Q9BTW9-2|TBCD;ENST00000576677.5_1_17:80888388-80900336:+|nuORF;ENST00000576603.5_1_17:80889830-80900336:+|nuORF;ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD;ENST00000573364.1_1_17:80890567-80895237:+|nuORF	ENST00000575132.5_1_17:80888388-80890612:+|nuORF	ENST00000575132.5_1_17:80888388-80890612:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.7984619140625	2	520.728935	1039.44332	-2.4002	-0.0012498	1.9714	0.0010266	-0.42873	-0.00022325	520.7297111704613	36.544	0.69036	33.835	33.499	34.189	-2.7097					15	13	2	0	0	0	0.027462	1	1535	1535		31.955	15.482	1	11806			15877	4926	12899	12920	17684	17684					-0.07482738250973853
HGCLRRLLL	9	Unmodified	_HGCLRRLLL_					0	0	0			REV__FARP2|p.Y914Tfs*24|1|0.22|ENSG00000006607|chr2:241491632-241491632|T/-|frameshift_variant	REV__FARP2|p.Y914Tfs*24|1|0.22|ENSG00000006607|chr2:241491632-241491632|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	540.8229370117188	2	540.826578	1079.6386	-5.3143	-0.0028741	1.054	0.00057001	-4.2604	-0.0023041	540.826839745021	155.99	0.54268	154.92	154.74	155.28	-1.073					33	15	3	0	0	0	0.55588	1	13420	13420		37.159	7.3176	1	35530	+		15878	16419	12900	12921	17685	17685					0.10196897064543009
HGDENVYYNL	10	Unmodified	_HGDENVYYNL_					0	0	0			REV__ENST00000358495.7_1_12:1022026-1022377:-|nuORF	REV__ENST00000358495.7_1_12:1022026-1022377:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	612.2941284179688	2	612.27001	1222.52547	0.74245	0.00045458	0.53084	0.00032502	1.2733	0.0007796	612.7721451364278	141.16	0.3053	141.16	141.03	141.34	0					8	5	2	0	0	0	0.026891	1	16502	16502		31.53	0	1	8807	+		15879	24799	12901	12922	17686	17686					-0.07689544638333246
HGEILQKIAE	10	Unmodified	_HGEILQKIAE_					0	0	0		tr|A0A553SQ14|A0A553SQ14_NIACIQuinoneoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_17080PE=4SV=1	tr|A0A553SQ14|A0A553SQ14_NIACIQuinoneoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_17080PE=4SV=1	tr|A0A553SQ14|A0A553SQ14_NIACIQuinoneoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_17080PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2958374023438	2	569.316763	1136.61897	2.0716	0.0011794	0.23845	0.00013575	2.3101	0.0013152	569.3169674524675	78.276	1.1103	78.276	77.844	78.955	0					46	26	3	0	0	0	0.026551	1	7880	7880		51.193	6.8155	1	1059300			15880	34105	12902	12923	17687	17687					0.056127995347424076
HGEILQKIAE	10	Unmodified	_HGEILQKIAE_					0	0	0		tr|A0A553SQ14|A0A553SQ14_NIACIQuinoneoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_17080PE=4SV=1	tr|A0A553SQ14|A0A553SQ14_NIACIQuinoneoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_17080PE=4SV=1	tr|A0A553SQ14|A0A553SQ14_NIACIQuinoneoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_17080PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	569.316763	1136.61897	-0.38843	-0.00022114	-0.11557	-6.5794E-05	-0.504	-0.00028693	569.3164858892599	80.673	0.77391	78.35	78.131	78.905	-2.3226	0.037027	-0.00025417	NaN	51.193	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38027			15881	34105	12902	12923							0.056127995347424076
HGFAGVILI	9	Unmodified	_HGFAGVILI_					0	0	0		ENSG00000077549|ENST00000264202|CAPZB;nc|ENSG00000077549|P47756-1|CAPZB;ZCCHC17-CAPZB|1|fusion;ZCCHC17-CAPZB|2|fusion	ENSG00000077549|ENST00000264202|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	MULTI-MSMS	OvCa99_classI_Rep5	1	463.77813720703125	2	463.776545	925.538538	2.4664	0.0011439	-0.042074	-1.9513E-05	2.4243	0.0011244	463.77635692737135	120.99	1.4349	120.99	120.74	122.17	0					70	31	3	0	0	0	0.32242	2	13901	13901;13947		60.404	9.2109	1	1726200			15882	1576	12903	12924	17688;17689	17688					0.07278983002368022
HGFGSKSE	8	Unmodified	_HGFGSKSE_					0	0	0		tr|A0A7D6VN86|A0A7D6VN86_9CLOTAldose1-epimerasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14340PE=4SV=1	tr|A0A7D6VN86|A0A7D6VN86_9CLOTAldose1-epimerasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14340PE=4SV=1	tr|A0A7D6VN86|A0A7D6VN86_9CLOTAldose1-epimerasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14340PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	425.2384948730469	2	424.698492	847.382431	0.30153	0.00012806	-0.13106	-5.5663E-05	0.17046	7.2395E-05	424.69832018468685	31.435	1.039	31.435	31.264	32.303	0					40	20	4	0	0	0	0.028476	1	1325	1325		21.96	0	1	716540			15883	34683	12904	12925	17690	17690					-0.047365072388970475
HGFKIGFKR	9	Unmodified	_HGFKIGFKR_					0	0	0		ENST00000564160.1_1_16:2722459-2722856:-|nuORF	ENST00000564160.1_1_16:2722459-2722856:-|nuORF	ENST00000564160.1_1_16:2722459-2722856:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3163452148438	2	545.319443	1088.62433	-2.8527	-0.0015556	-2.1935	-0.0011962	-5.0462	-0.0027518	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.6653	1	11707	11707		24.203	1.1603	1	337600			15884	13800	12905	12926	17691	17691					0.08356567907890167
HGFLFSKF	8	Unmodified	_HGFLFSKF_					0	0	0			REV__nc|ENSG00000089091|Q9NVP4-4|DZANK1	REV__nc|ENSG00000089091|Q9NVP4-4|DZANK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.275634765625	2	491.760895	981.507237	-0.45165	-0.0002221	-3.3865	-0.0016654	-3.8382	-0.0018875	491.75944916542863	42.86	0.51708	42.86	42.583	43.1	0					16	11	2	0	0	0	0.028476	1	2797	2797		44.531	0	1	76109	+		15885	28750	12906	12927	17692	17692					0.01574409968281998
HGFPNQPS	8	Unmodified	_HGFPNQPS_					0	0	0		ENSG00000131899|ENST00000316843|LLGL1;LLGL1|p.D128Wfs*28|1|0.18|ENSG00000131899|chr17:18232792-18232793|GA/-|frameshift_variant;LLGL1|p.G129Ffs*29|1|0.18|ENSG00000131899|chr17:18232793-18232794|-/TTTT|frameshift_variant	ENSG00000131899|ENST00000316843|LLGL1	ENSG00000131899|ENST00000316843|LLGL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.2910461425781	2	442.206484	882.398415	0.19393	8.5757E-05	4.3702	0.0019325	4.5641	0.0020183	442.2082441398047	68.578	0.54391	65.088	64.818	65.362	-3.4902					18	10	2	0	0	0	0.028476	1	5122	5122		14.664	5.8418	1	84343			15886	4096	12907	12928	17693	17693					-0.04748801001994707
HGGDIFNYI	9	Unmodified	_HGGDIFNYI_					0	0	0			REV__tr|A0A7D7A5U3|A0A7D7A5U3_9CLOTMethionyl-tRNAsynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07510PE=3SV=1	REV__tr|A0A7D7A5U3|A0A7D7A5U3_9CLOTMethionyl-tRNAsynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07510PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	518.2507934570312	2	518.248349	1034.48214	-0.43577	-0.00022584	0.76096	0.00039437	0.32519	0.00016853	518.2485305204984	62.139	0.632	62.139	61.869	62.501	0					45	14	5	0	0	0	0.21395	1	5508	5508		73.975	2.679	1	3071600	+		15887	32643	12908	12929	17694	17694					-0.03371689624964347
HGGGHLLL	8	Unmodified	_HGGGHLLL_					0	0	0			REV__ENST00000542710.3_1_11:73882466-73916947:+|nuORF	REV__ENST00000542710.3_1_11:73882466-73916947:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.5491943359375	2	402.229762	802.444972	1.5587	0.00062697	-1.8269	-0.00073484	-0.26818	-0.00010787	402.229004236798	46.34	0.51873	46.34	46.112	46.631	0					14	11	2	0	0	0	0.028476	1	3293	3293		24.504	5.144	1	98956	+		15888	23291	12909	12930	17695	17695					0.03584683619953921
HGGGPGGP	8	Unmodified	_HGGGPGGP_					0	0	0		nc|ENSG00000168066|Q15637-4|SF1;nc|ENSG00000168066|Q15637-6|SF1;nc|ENSG00000168066|Q15637-7|SF1;nc|ENSG00000168066|Q15637-3|SF1;nc|ENSG00000168066|Q15637-2|SF1;ENSG00000168066|ENST00000377390|SF1;nc|ENSG00000168066|Q15637-5|SF1	nc|ENSG00000168066|Q15637-4|SF1	nc|ENSG00000168066|Q15637-4|SF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	635.4000854492188	1	635.289599	634.282323	-0.79836	-0.00050719	-1.5776	-0.0010022	-2.3759	-0.0015094	635.288665949151	70.112	0.691	70.112	69.756	70.447	0					22	16	2	0	0	0	0.028476	1	6732	6732		5.0869	0	1	784200			15889	6871	12910	12931	17696	17696					-0.04944699782049611
HGGIALGLD	9	Unmodified	_HGGIALGLD_					0	0	0		ENSG00000117593|ENST00000649689|DARS2;KLHL20-DARS2|2|fusion;KLHL20-DARS2|1|fusion	ENSG00000117593|ENST00000649689|DARS2	ENSG00000117593|ENST00000649689|DARS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	426.7198486328125	2	426.732335	851.450116	0.24466	0.0001044	0.60573	0.00025849	0.85039	0.00036289	426.7321646411389	31.134	0.57961	31.134	30.781	31.361	0					19	11	3	0	0	0	0.027426	1	1272	1272		63.306	0	1	68903			15890	3263	12911	12932	17697	17697					0.01844942691889173
HGGLRGPH	8	Unmodified	_HGGLRGPH_					0	0	0			REV__CATSPER4|p.G237Wfs*33|1|0.06|ENSG00000188782|chr1:26198314-26198315|-/C|frameshift_variant	REV__CATSPER4|p.G237Wfs*33|1|0.06|ENSG00000188782|chr1:26198314-26198315|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	415.7220153808594	2	415.722636	829.430718	-1.0163	-0.00042249	-0.68268	-0.00028381	-1.699	-0.00070629	415.72221629127785	119.3	1.3301	119.13	118.81	120.14	-0.17138					54	26	3	0	0	0	0.75915	1	11508	11508		20.482	0	1	206540	+		15891	15744	12912	12933	17698	17698					0.009180311916679784
HGHMHHSHS	9	Unmodified	_HGHMHHSHS_					0	0	0			REV__ENSG00000145740|ENST00000396591|SLC30A5	REV__ENSG00000145740|ENST00000396591|SLC30A5	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.7875366210938	2	533.722841	1065.43113	-0.25412	-0.00013563	0.037262	1.9887E-05	-0.21685	-0.00011574	533.7223018199135	87.3	1.0245	85.123	84.784	85.809	-2.1768					26	19	2	0	0	0	0.027462	1	5312	5312		17.365	0	1	22037	+		15892	19981	12913	12934	17699	17699					-0.09896917150808804
HGIESLVRRK	10	Unmodified	_HGIESLVRRK_					0	0	0			REV__tr|A0A7D6ZGR4|A0A7D6ZGR4_9CLOTMBLfoldmetallo-hydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23700PE=4SV=1	REV__tr|A0A7D6ZGR4|A0A7D6ZGR4_9CLOTMBLfoldmetallo-hydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23700PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8565063476562	2	597.856921	1193.69929	-0.38237	-0.0002286	-0.55263	-0.00033039	-0.935	-0.00055899	597.8564103488146	145.14	4.0194	143.71	141.51	145.53	-1.4357					229	77	4	0	0	0	0.7759	1	14278	14278		21.96	1.013	1	217250	+		15893	32006	12914	12935	17700	17700					0.11018705648439209
HGIGEDAL	8	Unmodified	_HGIGEDAL_					0	0	0		tr|A0A553SPS9|A0A553SPS9_NIACIPhoD-likephosphatasemetallophosphatasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26840PE=4SV=1	tr|A0A553SPS9|A0A553SPS9_NIACIPhoD-likephosphatasemetallophosphatasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26840PE=4SV=1	tr|A0A553SPS9|A0A553SPS9_NIACIPhoD-likephosphatasemetallophosphatasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26840PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	406.2019958496094	2	406.200867	810.387182	-0.71092	-0.00028878	0.54113	0.00021981	-0.16978	-6.8967E-05	406.20098492434767	49.367	2.4314	46.225	45.623	48.054	-3.1416					108	46	4	0	0	0	0.52992	1	2781	2781		74.517	3.1387	1	1031500			15894	34080	12915	12936	17701	17701					-0.025596230961355104
HGILFVPK	8	Unmodified	_HGILFVPK_					0	0	0			REV__ENST00000573846.1_1_16:67976245-67976785:-|nuORF	REV__ENST00000573846.1_1_16:67976245-67976785:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.7722473144531	2	455.779088	909.543623	-0.62321	-0.00028405	0.32324	0.00014732	-0.29998	-0.00013672	455.7784714616488	41.447	0.67591	38.466	38.388	39.064	-2.9804					15	12	2	0	0	0	0.028476	1	1905	1905		20.482	5.8177	1	12955	+		15895	23258	12916	12937	17702	17702					0.08523286864988222
HGKGRENGY	9	Unmodified	_HGKGRENGY_					0	0	0		nc|ENSG00000173575|O14647-2|CHD2;ENSG00000173575|ENST00000394196|CHD2;CHD2|p.D677A|1|0.88|ENSG00000173575|chr15:92967354-92967354|A/C|missense_variant	nc|ENSG00000173575|O14647-2|CHD2	nc|ENSG00000173575|O14647-2|CHD2	MULTI-SECPEP	OvCa9_classI_Rep2	2	509.8059387207031	2	509.246672	1016.47879	-0.026045	-1.3263E-05	-1.6534	-0.00084199	-1.6794	-0.00085525	509.2456258618843	40.582	0.64004	37.872	37.65	38.29	-2.7097					25	12	3	0	0	0	0.027462	1	2105	2105		17.365	0	1	41170			15896	7391	12917	12938	17703	17703					-0.028789396789534294
HGKHSSSSSI	10	Unmodified	_HGKHSSSSSI_					0	0	0		ENST00000456678.1_1_1:198166911-198167118:-|nuORF	ENST00000456678.1_1_1:198166911-198167118:-|nuORF	ENST00000456678.1_1_1:198166911-198167118:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.7874755859375	2	513.751787	1025.48902	-0.32163	-0.00016524	-3.3376	-0.0017147	-3.6592	-0.0018799	513.7511414595472	39.446	0.59539	36.52	36.296	36.891	-2.9264					15	11	2	0	0	0	0.026577	1	1657	1657		49.536	0	1	24111			15897	12114	12918	12939	17704	17704					-0.02270376744377245
HGKLVYTF	8	Unmodified	_HGKLVYTF_					0	0	0			REV__nc|ENSG00000108039|Q9NQW7-2|XPNPEP1	REV__nc|ENSG00000108039|Q9NQW7-2|XPNPEP1	MULTI-MSMS	OvCa99_classI_Rep5	1	482.7664794921875	2	482.766178	963.517802	-0.52743	-0.00025462	-0.72973	-0.00035229	-1.2572	-0.00060691	482.76570436001924	28.732	3.4175	28.732	28.439	31.857	0					119	68	4	0	0	0	0.73938	1	1052	1052		31.955	1.4512	1	368670	+		15898	17870	12919	12940	17705	17705					0.03458392622701467
HGKNRKKT	8	Unmodified	_HGKNRKKT_					0	0	0			REV__L1PB1_dup5905|chr7:93807211-93809400:+|8.337698263303487|0.2056128638309657|5.34|416.0|54|3|sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|8.337698263303487|0.2056128638309657|5.34|416.0|54|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.2681579589844	2	484.79105	967.567546	-0.65519	-0.00031763	3.6543	0.0017716	2.9991	0.0014539	484.7924265833805	39.617	0.46357	39.617	39.376	39.84	0					16	10	2	0	0	0	0.028476	1	2372	2372		11.511	0	1	176080	+		15899	28595	12920	12941	17706	17706					0.08246520351360687
HGKQPSAP	8	Unmodified	_HGKQPSAP_					0	0	0			REV__ENST00000553031.1_1_12:32893126-32893195:+|nuORF	REV__ENST00000553031.1_1_12:32893126-32893195:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	410.76123046875	2	411.216852	820.419151	-0.06375	-2.6215E-05	1.235	0.00050785	1.1712	0.00048164	411.21689238256783	34.435	0.51778	34.435	34.161	34.679	0					22	10	3	0	0	0	0.028476	1	1680	1680		47.916	19.661	1	136310	+		15900	17167	12921	12942	17707	17707					0.0017578937765847513
HGLENFLTKN	10	Unmodified	_HGLENFLTKN_					0	0	0		nc|ENSG00000143190|P14859-4|POU2F1	nc|ENSG00000143190|P14859-4|POU2F1	nc|ENSG00000143190|P14859-4|POU2F1	MULTI-MSMS	OvCa9_classI_Rep3	3	586.8034057617188	2	586.806562	1171.59857	-8.2814	-0.0048596	2.4781	0.0014542	-5.8033	-0.0034054	586.8077830487384	159.82	3.6388	158.49	157.91	161.55	-1.3316					146	73	3	0	0	0	0.75313	1	13836	13836		24.519	0.28737	1	151840			15901	15072	12922	12943	17708	17708					0.019636288749325104
HGLHFPNYET	10	Unmodified	_HGLHFPNYET_					0	0	0			REV__tr|A0A7D6VU78|A0A7D6VU78_9CLOTtRNA(Met)cytidineacetateligaseOS=ClostridiumintestinaleOX=36845GN=tmcALPE=3SV=1	REV__tr|A0A7D6VU78|A0A7D6VU78_9CLOTtRNA(Met)cytidineacetateligaseOS=ClostridiumintestinaleOX=36845GN=tmcALPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.5375671386719	3	405.524484	1213.55162	1.0017	0.00040621	-0.57967	-0.00023507	0.42202	0.00017114	405.5243234635589	73.134	0.15971	73.134	73.035	73.195	0					5	3	2	0	0	0	0.027204	1	7154	7154		4.0829	3.085	1	94398	+		15902	31658	12923	12944	17709	17709					-0.04661230676197192
HGLLGPPLGR	10	Unmodified	_HGLLGPPLGR_					0	0	0			REV__ENST00000381440.4_1_16:19125712-19125829:+|nuORF	REV__ENST00000381440.4_1_16:19125712-19125829:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.8023681640625	2	508.803626	1015.5927	-0.34238	-0.0001742	0.30459	0.00015498	-0.037785	-1.9225E-05	508.8036315522624	22.043	1.1992	20.704	20.473	21.672	-1.3386					60	27	3	0	0	0	0.71192	1	262	262		29.15	0.89528	1	236460	+		15903	25197	12924	12945	17710	17710					0.08552575153930775
HGLRRVPPAS	10	Unmodified	_HGLRRVPPAS_					0	0	0			REV__ENSG00000196182|ENST00000373132|STK40	REV__ENSG00000196182|ENST00000373132|STK40	MULTI-MSMS	OvCa9_classI_Rep2	2	545.31640625	2	545.317432	1088.62031	-1.7047	-0.0009296	0.076343	4.1631E-05	-1.6283	-0.00088797	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.66721	1	14235	14235		34.173	10.65	1	202430	+		15904	22795	12925	12946	17711	17711					0.07954478414171717
HGLRRVPPAS	10	Unmodified	_HGLRRVPPAS_					0	0	0			REV__ENSG00000196182|ENST00000373132|STK40	REV__ENSG00000196182|ENST00000373132|STK40	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3163452148438	2	545.317432	1088.62031	-2.8527	-0.0015556	1.4949	0.0008152	-1.3578	-0.00074042	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.69073	2	11701	11701;11891		31.53	8.0071	1	337600	+		15905	22795	12925	12946	17712;17713	17712					0.07954478414171717
HGNLEKKQKLA	11	Unmodified	_HGNLEKKQKLA_					0	0	0		ENST00000409835.5_1_2:63587012-63815411:-|nuORF;nc|ENSG00000143951|O95876-2|WDPCP;ENSG00000143951|ENST00000272321|WDPCP	ENST00000409835.5_1_2:63587012-63815411:-|nuORF;ENSG00000143951|ENST00000272321|WDPCP	ENST00000409835.5_1_2:63587012-63815411:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3693237304688	2	633.369861	1264.72517	-4.5141	-0.0028591	3.4388	0.002178	-1.0753	-0.00068108	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.71789	2	15597	15442;15597		23.523	1.8262	1	369460			15906	11536;5111	12926	12947	17714;17715	17715					0.10339555100085818
HGNLEKKQKLA	11	Unmodified	_HGNLEKKQKLA_					0	0	0		ENST00000409835.5_1_2:63587012-63815411:-|nuORF;nc|ENSG00000143951|O95876-2|WDPCP;ENSG00000143951|ENST00000272321|WDPCP	ENST00000409835.5_1_2:63587012-63815411:-|nuORF;ENSG00000143951|ENST00000272321|WDPCP	ENST00000409835.5_1_2:63587012-63815411:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3703002929688	2	633.369861	1264.72517	-4.8824	-0.0030923	3.9881	0.002526	-0.89421	-0.00056637	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.70761	2	13189	13050;13189		27.047	2.8155	1	765700			15907	11536;5111	12926	12947	17716;17717	17717					0.10339555100085818
HGNLEKKQKLA	11	Unmodified	_HGNLEKKQKLA_					0	0	0		ENST00000409835.5_1_2:63587012-63815411:-|nuORF;nc|ENSG00000143951|O95876-2|WDPCP;ENSG00000143951|ENST00000272321|WDPCP	ENST00000409835.5_1_2:63587012-63815411:-|nuORF;ENSG00000143951|ENST00000272321|WDPCP	ENST00000409835.5_1_2:63587012-63815411:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.368896484375	2	633.369861	1264.72517	-3.7067	-0.0023477	2.7994	0.0017731	-0.90726	-0.00057463	633.3714685413702	153.42	3.7144	151.96	150.68	154.4	-1.4516					273	94	4	0	0	0	0.71789	1	15178	15178		23.523	1.5628	1	395790			15908	11536;5111	12926	12947	17718	17718					0.10339555100085818
HGNNKVRDKI	10	Unmodified	_HGNNKVRDKI_					0	0	0			REV__tr|A0A7D6ZSZ0|A0A7D6ZSZ0_9CLOTDUF4865familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09415PE=4SV=1	REV__tr|A0A7D6ZSZ0|A0A7D6ZSZ0_9CLOTDUF4865familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09415PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	590.830810546875	2	590.830903	1179.64725	0.72982	0.0004312	-0.6491	-0.00038351	0.080723	4.7694E-05	590.8303573746414	32.589	1.206	29.894	29.544	30.75	-2.6954					63	26	4	0	0	0	0.83261	1	771	771		14.865	2.658	1	114090	+		15909	32196	12927	12948	17719	17719					0.0646154223470603
HGPFSMSC	8	Unmodified	_HGPFSMSC_					0	0	0		SVA_D_dup912|chr11:73935626-73937666:-|1.861451030615439|0.3832838640500095|2.28|429.0|63|2|anti-sense;SVA_D_dup1417|chr21:8350923-8352925:-|16.64451059665088|0.0287746324772857|9.18|429.0|53|1|anti-sense;SVA_B_dup173|chr4:48185818-48187447:+|1.7426897649738875|0.0421009603888101|5.37|413.0|44|1|anti-sense;SVA_C_dup306|chr11:76581923-76583356:-|1.005766169199819|0.0397377111360499|4.66|411.0|52|2|anti-sense;SVA_C_dup104|chr4:48291729-48293365:+|1.5948730950857304|0.4994645192076182|1.67|429.0|51|1|anti-sense	SVA_D_dup912|chr11:73935626-73937666:-|1.861451030615439|0.3832838640500095|2.28|429.0|63|2|anti-sense	SVA_D_dup912|chr11:73935626-73937666:-|1.861451030615439|0.3832838640500095|2.28|429.0|63|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	433.171630859375	2	433.170198	864.325844	2.6506	0.0011482	0.052767	2.2857E-05	2.7034	0.001171	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.74679	1	1790	1790		28.254	1.4582	1	60065			15910	32930	12928	12949	17720	17720					-0.11174594391422943
HGPFSMSC	8	Unmodified	_HGPFSMSC_					0	0	0		SVA_D_dup912|chr11:73935626-73937666:-|1.861451030615439|0.3832838640500095|2.28|429.0|63|2|anti-sense;SVA_D_dup1417|chr21:8350923-8352925:-|16.64451059665088|0.0287746324772857|9.18|429.0|53|1|anti-sense;SVA_B_dup173|chr4:48185818-48187447:+|1.7426897649738875|0.0421009603888101|5.37|413.0|44|1|anti-sense;SVA_C_dup306|chr11:76581923-76583356:-|1.005766169199819|0.0397377111360499|4.66|411.0|52|2|anti-sense;SVA_C_dup104|chr4:48291729-48293365:+|1.5948730950857304|0.4994645192076182|1.67|429.0|51|1|anti-sense	SVA_D_dup912|chr11:73935626-73937666:-|1.861451030615439|0.3832838640500095|2.28|429.0|63|2|anti-sense	SVA_D_dup912|chr11:73935626-73937666:-|1.861451030615439|0.3832838640500095|2.28|429.0|63|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1716613769531	2	433.170198	864.325844	1.9505	0.00084491	2.0412	0.00088417	3.9917	0.0017291	433.17100760562903	63.152	4.2639	60.118	58.202	62.466	-3.0339					141	92	2	0	0	0	0.74361	1	2404	2404		29.842	0.69198	1	38128			15911	32930	12928	12949	17721	17721					-0.11174594391422943
HGPTLLFVK	9	Unmodified	_HGPTLLFVK_					0	0	0		nc|ENSG00000168228|Q9H5U6-2|ZCCHC4;ENST00000505451.5_1_4:25314431-25353701:+|nuORF;nc|ENSG00000168228|Q9H5U6-3|ZCCHC4;ENSG00000168228|ENST00000302874|ZCCHC4	nc|ENSG00000168228|Q9H5U6-2|ZCCHC4	nc|ENSG00000168228|Q9H5U6-2|ZCCHC4	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.77044677734375	2	506.302927	1010.5913	0.99114	0.00050182	1.9142	0.00096916	2.9053	0.001471	506.30382870002427	81.556	0.44591	81.556	81.248	81.694	0					16	10	2	0	0	0	0.02741	1	8371	8371		51.335	0	1	460700			15912	6880	12929	12950	17722	17722					0.086429410651931
HGQKVLVIPT	10	Unmodified	_HGQKVLVIPT_					0	0	0			REV__ENST00000486616.5_1_3:38045275-38047830:+|nuORF	REV__ENST00000486616.5_1_3:38045275-38047830:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	546.330810546875	2	546.332216	1090.64988	-2.6411	-0.0014429	-0.058936	-3.2199E-05	-2.7001	-0.0014751	546.3320576477423	36.639	1.8723	33.93	33.647	35.519	-2.7097					83	37	3	0	0	0	0.73378	1	1625	1625		26.693	0	1	180730	+		15913	19355	12930	12951	17723	17723					0.10817997639628629
HGQRELILV	9	Unmodified	_HGQRELILV_					0	0	0			REV__ENST00000546420.5_1_12:120437705-120530962:+|nuORF	REV__ENST00000546420.5_1_12:120437705-120530962:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.2764892578125	2	532.81419	1063.61383	1.8144	0.00096672	-1.2225	-0.00065138	0.59184	0.00031534	532.813540648475	77.87	0.54475	77.87	77.629	78.174	0					18	12	2	0	0	0	0.027462	1	7902	7902		37.159	3.6435	1	218210	+		15914	19262	12931	12952	17724	17724					0.08456540462793782
HGRGLVGK	8	Unmodified	_HGRGLVGK_					0	0	0			REV__chr19:17779232-17781231|292|20.58|0.0|12.07|+|0|TE_info:L2a,L2a_dup157553,L2,LINE,donor,-,17778935,17779232|None,FCHO1|3	REV__chr19:17779232-17781231|292|20.58|0.0|12.07|+|0|TE_info:L2a,L2a_dup157553,L2,LINE,donor,-,17778935,17779232|None,FCHO1|3	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.7041931152344	2	412.248486	822.48242	0.81833	0.00033736	-2.0839	-0.0008591	-1.2656	-0.00052174	412.2478827759406	30.387	0.29682	30.387	30.285	30.582	0					9	5	2	0	0	0	0.028476	1	1162	1162		18.324	0	1	10802	+		15915	15969	12932	12953	17725	17725					0.06407774885565232
HGRIGRPPK	9	Unmodified	_HGRIGRPPK_					0	0	0		nc|ENSG00000185513|Q9Y468-3|L3MBTL1;nc|ENSG00000185513|Q9Y468-2|L3MBTL1;nc|ENSG00000185513|Q9Y468-4|L3MBTL1;nc|ENSG00000185513|Q9Y468-1|L3MBTL1;nc|ENSG00000185513|Q9Y468|L3MBTL1;ENSG00000185513|ENST00000418998|L3MBTL1	nc|ENSG00000185513|Q9Y468-3|L3MBTL1	nc|ENSG00000185513|Q9Y468-3|L3MBTL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.3056335449219	2	509.306867	1016.59918	-1.8721	-0.00095349	0.17299	8.8103E-05	-1.6992	-0.00086539	509.306823448672	147.28	1.1942	145.84	145.53	146.73	-1.4351					49	23	3	0	0	0	0.70177	1	14519	14519		17.365	0	1	91709			15916	8259	12933	12954	17726	17726					0.09154513105318074
HGRILKNVSEL	11	Unmodified	_HGRILKNVSEL_					0	0	0		nc|ENSG00000189042|Q8N184-2|ZNF567;nc|ENSG00000189042|Q8N184-1|ZNF567;ENSG00000189042|ENST00000682579|ZNF567	nc|ENSG00000189042|Q8N184-2|ZNF567	nc|ENSG00000189042|Q8N184-2|ZNF567	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.3703002929688	2	633.369861	1264.72517	-2.0264	-0.0012835	1.0791	0.00068348	-0.9473	-0.00059999	633.3704245475564	148.87	1.0967	147.43	146.93	148.02	-1.4344					53	22	3	0	0	0	0.72479	1	14704	14704		18.262	0	1	50822			15917	8527	12934	12955	17727	17727					0.10339555100085818
HGRRLVAAGLG	11	Unmodified	_HGRRLVAAGLG_					0	0	0			REV__ENST00000261797.6_1_5:149887692-149900432:+|nuORF	REV__ENST00000261797.6_1_5:149887692-149900432:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8295288085938	2	553.830706	1105.64686	-2.2198	-0.0012294	1.0181	0.00056387	-1.2017	-0.00066553	553.8311075714116	139.08	3.9663	138.02	135.98	139.95	-1.0595					202	80	4	0	0	0	0.70518	1	11493	11493		27.882	1.8189	1	74733	+		15918	23957	12935	12956	17728	17728					0.09826167305504896
HGRRSRRRRKK	11	Unmodified	_HGRRSRRRRKK_					0	0	0		chr19:11441357-11447547|93|50.35|0.01|12.51|+|1|PRKCSH,None|1	chr19:11441357-11447547|93|50.35|0.01|12.51|+|1|PRKCSH,None|1	chr19:11441357-11447547|93|50.35|0.01|12.51|+|1|PRKCSH,None|1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.31048583984375	3	498.313797	1491.91956	-5.1129	-0.0025478	-2.7301	-0.0013604	-7.843	-0.0039083	498.3123780141879	160.35	1.8473	160.12	159.68	161.53	-0.22697					120	37	4	0	0	0	0.72582	1	16349	16349		3.2113	0	1	150420			15919	400	12936	12957	17729	17729					0.1932778881921422
HGRSPLLA	8	Unmodified	_HGRSPLLA_					0	0	0			REV__ENST00000251166.8_1_16:4404717-4405131:-|nuORF	REV__ENST00000251166.8_1_16:4404717-4405131:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	425.74957275390625	2	425.748319	849.482085	-0.87383	-0.00037203	0.64563	0.00027488	-0.2282	-9.7155E-05	425.748554619023	44.53	1.7012	41.491	41.156	42.858	-3.0385					76	32	4	0	0	0	0.74679	1	2237	2237		28.254	1.4582	1	553650	+		15920	23863	12937	12958	17730	17730					0.05132355165710578
HGSHSMRYF	9	Unmodified	_HGSHSMRYF_					0	0	0		chr6:31271868-31272617|163|28.29|0.0|16.53|-|2|HLA-C,None|1	chr6:31271868-31272617|163|28.29|0.0|16.53|-|2|HLA-C,None|1	chr6:31271868-31272617|163|28.29|0.0|16.53|-|2|HLA-C,None|1	MULTI-MSMS	OvCa99_classI_Rep5	1	561.250732421875	2	561.2509	1120.48725	-0.33601	-0.00018858	-0.17015	-9.5496E-05	-0.50616	-0.00028408	561.2506409385555	37	0.7795	37	36.751	37.531	0					42	16	4	0	0	0	0.31747	1	1992	1992		60.972	0.85368	1	1388800			15921	509	12938	12959	17731	17731					-0.06817709033998653
HGSRKTLKVRT	11	Unmodified	_HGSRKTLKVRT_					0	0	0			REV__ENST00000564970.1_1_15:75780109-75798128:-|nuORF	REV__ENST00000564970.1_1_15:75780109-75798128:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	641.88330078125	2	641.888752	1281.76295	-5.3554	-0.0034376	-4.2627	-0.0027362	-9.6181	-0.0061737	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.72497	1	13384	13384		16.007	1.1419	1	804890	+		15922	21461	12939	12960	17732	17732					0.13334066085553786
HGTDTRFEI	9	Unmodified	_HGTDTRFEI_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	OvCa99_classI_Rep5	1	538.2637329101562	2	538.261988	1074.50942	-0.52829	-0.00028436	-0.056108	-3.0201E-05	-0.5844	-0.00031456	538.2619298957676	61.4	1.1396	61.4	61.113	62.253	0					63	26	4	0	0	0	0.1149	1	5404	5404		93.143	7.9824	1	3537300			15923	1532	12940	12961	17733	17733					-0.024852060845887536
HGTPTIFYL	9	Unmodified	_HGTPTIFYL_					0	0	0			REV__ENST00000371478.2_1_5:132097291-132101152:-|nuORF	REV__ENST00000371478.2_1_5:132097291-132101152:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	524.776611328125	2	524.776742	1047.53893	1.2327	0.0006469	-4.0838	-0.0021431	-2.8511	-0.0014962	524.7742989628338	74.737	0.48847	74.737	74.517	75.005	0					27	11	3	0	0	0	0.44294	1	7412	7412		47.916	1.9636	1	1188100	+		15924	20986	12941	12962	17734	17734					0.01706357931561797
HGTPTIFYL	9	Unmodified	_HGTPTIFYL_					0	0	0			REV__ENST00000371478.2_1_5:132097291-132101152:-|nuORF	REV__ENST00000371478.2_1_5:132097291-132101152:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	524.776742	1047.53893	1.2327	0.0006469	-4.0838	-0.0021431	-2.8511	-0.0014962	524.7742989628338	74.737	0.48847	74.737	74.517	75.005	0	0	0	NaN	47.916	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1188100	+		15925	20986	12941	12962							0.01706357931561797
HGTREDVVL	9	Unmodified	_HGTREDVVL_					0	0	0			REV__nc|ENSG00000221866|Q9HCM2-2|PLXNA4	REV__nc|ENSG00000221866|Q9HCM2-2|PLXNA4	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.3270874023438	2	513.272355	1024.53016	-1.2028	-0.00061738	2.3445	0.0012034	1.1417	0.000586	513.2737081784782	68.09	0.68852	65.429	65.041	65.729	-2.661					21	13	2	0	0	0	0.027433	1	5309	5309		51.335	18.523	1	18021	+		15926	23344	12942	12963	17735	17735					0.01887384295105221
HGVFTDIIAR	10	Unmodified	_HGVFTDIIAR_					0	0	0			REV__nc|ENSG00000107331|Q9BZC7|ABCA2	REV__nc|ENSG00000107331|Q9BZC7|ABCA2	MULTI-SECPEP	OvCa9_classI_Rep2	2	564.8643188476562	2	564.811648	1127.60874	0.74897	0.00042303	-2.303	-0.0013008	-1.5541	-0.00087775	564.8100987699247	43.194	0.79184	40.484	40.262	41.054	-2.7097					21	15	2	0	0	0	0.027241	1	2353	2353		24.519	6.1948	1	27822	+		15927	17843	12943	12964	17736	17736					0.050042366001889604
HGVLAWVKEKV	11	Unmodified	_HGVLAWVKEKV_					0	0	0		nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-5|IL32	nc|ENSG00000008517|P24001-5|IL32	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3692016601562	2	633.371872	1264.72919	-4.5141	-0.0028591	0.26314	0.00016666	-4.251	-0.0026925	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.72466	1	15615	15615		19.997	0	1	369460			15928	923	12944	12965	17737	17737					0.1074164459378153
HGVLIRGKLM	10	Unmodified	_HGVLIRGKLM_					0	0	0			REV__nc|ENSG00000148300|Q9GZR2-2|REXO4	REV__nc|ENSG00000148300|Q9GZR2-2|REXO4	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3434448242188	2	562.342061	1122.66957	1.2434	0.00069921	1.201	0.00067537	2.4444	0.0013746	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.76627	1	13961	13961		23.042	2.0956	1	683710	+		15929	20100	12945	12966	17738	17738					0.11314050378769025
HGVPLGPSL	9	Unmodified	_HGVPLGPSL_					0	0	0			REV__ENST00000328914.4_1_7:4802311-4802611:+|nuORF	REV__ENST00000328914.4_1_7:4802311-4802611:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	438.2393798828125	2	438.750527	875.486502	-0.47242	-0.00020728	-1.2224	-0.00053634	-1.6948	-0.00074361	438.7499300230092	93.651	1.1578	91.144	90.863	92.021	-2.5072					44	24	2	0	0	0	0.027456	1	8175	8175		26.796	0	1	182240	+		15930	24514	12946	12967	17739	17739					0.04377819588614784
HGVRALIRAN	10	Unmodified	_HGVRALIRAN_					0	0	0			REV__ENSG00000145040|ENST00000273610|UCN2	REV__ENSG00000145040|ENST00000273610|UCN2	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8295288085938	2	553.830706	1105.64686	-0.8401	-0.00046527	-0.49633	-0.00027488	-1.3364	-0.00074015	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.69986	1	14204	14204		30.504	1.3541	1	245610	+		15931	19949	12947	12968	17740	17740					0.09826167305527633
HGWFRWWLHHL	11	Unmodified	_HGWFRWWLHHL_					0	0	0		nc|ENSG00000183283|Q15038-5|DAZAP2	nc|ENSG00000183283|Q15038-5|DAZAP2	nc|ENSG00000183283|Q15038-5|DAZAP2	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.7623901367188	3	525.602062	1573.78436	-0.49783	-0.00026166	-0.53641	-0.00028194	-1.0342	-0.0005436	525.6019459371515	64.168	0.68348	61.444	61.234	61.917	-2.7245					18	12	2	0	0	0	0.026158	1	4860	4860		10.587	4.5858	1	11527			15932	15211	12948	12969	17741	17741					0.02041495904927615
HGWLTLYFW	9	Unmodified	_HGWLTLYFW_					0	0	0		tr|A0A553SIT8|A0A553SIT8_NIACITransportpermeaseproteinOS=NialliacirculansOX=1397GN=CEQ21_15505PE=3SV=1	tr|A0A553SIT8|A0A553SIT8_NIACITransportpermeaseproteinOS=NialliacirculansOX=1397GN=CEQ21_15505PE=3SV=1	tr|A0A553SIT8|A0A553SIT8_NIACITransportpermeaseproteinOS=NialliacirculansOX=1397GN=CEQ21_15505PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.2264709472656	3	408.206315	1221.59712	0.62233	0.00025404	-1.5791	-0.00064459	-0.95675	-0.00039055	408.20603622987727	38.184	0.18266	38.184	38.024	38.207	0					5	3	2	0	0	0	0.027462	1	2134	2134		9.7057	1.6713	1	8661.6			15933	33422	12949	12970	17742	17742					-0.004819604231443009
HGYAISDLL	9	Unmodified	_HGYAISDLL_					0	0	0			REV__nc|ENSG856|P87889|ERVK-10_gag	REV__nc|ENSG856|P87889|ERVK-10_gag	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.303466796875	2	494.758549	987.502546	0.52065	0.0002576	2.5987	0.0012857	3.1194	0.0015433	494.7596198880905	113.38	0.68034	111.94	111.66	112.34	-1.4461					29	13	3	0	0	0	0.027462	1	10473	10473		19.36	0	1	79935	+		15934	29232	12950	12971	17743	17743					0.00829481034861601
HHCIREANAQ	10	Unmodified	_HHCIREANAQ_					0	0	0			REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|92|2|sense	REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|92|2|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.778564453125	2	589.777813	1177.54107	-1.6016	-0.00094457	3.6114	0.0021299	2.0098	0.0011853	589.7798878399616	126.92	1.9262	125.49	125.15	127.07	-1.4357					52	37	2	0	0	0	0.6104	1	12104	12104		40.778	2.9666	1	186430	+		15935	28556	12951	12972	17744	17744					-0.040595366022898816
HHDRDLEF	8	Unmodified	_HHDRDLEF_					0	0	0			REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|7|1|sense	REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|7|1|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.7767333984375	2	534.746505	1067.47846	-1.5002	-0.00080221	4.3212	0.0023107	2.821	0.0015085	534.750386785014	75.561	0.72076	73.707	73.481	74.202	-1.854					18	13	3	0	0	0	0.028476	1	6237	6237		60.294	10.269	1	32189	+		15936	28554	12952	12973	17745	17745					-0.05258359398817447
HHESSSGQ	8	Unmodified	_HHESSSGQ_					0	0	0		ENSG00000197915|ENST00000368801|HRNR;CON__Q86YZ3	ENSG00000197915|ENST00000368801|HRNR	ENSG00000197915|ENST00000368801|HRNR	MULTI-SECPEP	OvCa9_classI_Rep2	2	434.7594299316406	2	434.68083	867.347108	-0.89932	-0.00039092	-3.3113	-0.0014394	-4.2106	-0.0018303	434.67853736199095	33.657	0.29567	30.947	30.873	31.168	-2.7097					9	5	2	0	0	0	0.028476	1	1213	1213		44.117	9.9443	1	10869		+	15937	659	12953	12974	17746	17746					-0.09187169766698844
HHFLGDLFDE	10	Unmodified	_HHFLGDLFDE_					0	0	0			REV__tr|A0A553SS24|A0A553SS24_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02340PE=4SV=1	REV__tr|A0A553SS24|A0A553SS24_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02340PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.2255859375	3	410.524372	1228.55129	1.08	0.00044335	-4.2588	-0.0017483	-3.1788	-0.001305	410.52234749353596	56.94	0.21573	56.94	56.788	57.004	0					5	4	2	0	0	0	0.026803	1	4757	4757		26.063	0	1	29314	+		15938	30791	12954	12975	17747	17747					-0.05384650396035795
HHGGDSTHLRR	11	Unmodified	_HHGGDSTHLRR_					0	0	0		sp|Q6SW73|ICP27_HCMVMmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL69PE=3SV=1;sp|P16749|ICP27_HCMVAmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL69PE=1SV=1	sp|Q6SW73|ICP27_HCMVMmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL69PE=3SV=1	sp|Q6SW73|ICP27_HCMVMmRNAexportfactorICP27homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL69PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	424.88104248046875	3	424.881664	1271.62316	-0.23158	-9.8394E-05	-3.1949	-0.0013575	-3.4265	-0.0014559	424.88014451964415	55.217	1.159	55.217	54.935	56.094	0					61	27	5	0	0	0	0.58572	1	4525	4525		33.039	0	1	2383900			15939	32894	12955	12976	17748	17748					-0.0017829819898906862
HHLPRPRDH	9	Unmodified	_HHLPRPRDH_					0	0	0		ENST00000369800.5_1_5:172116953-172117430:+|nuORF	ENST00000369800.5_1_5:172116953-172117430:+|nuORF	ENST00000369800.5_1_5:172116953-172117430:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.3190307617188	2	582.810305	1163.60606	-0.85959	-0.00050098	2.8456	0.0016585	1.9861	0.0011575	582.8119252689195	33.705	0.72696	33.705	33.434	34.161	0					23	14	2	0	0	0	0.027462	1	1621	1621		29.15	8.2026	1	29642			15940	10905	12956	12977	17749	17749					0.03079825985878415
HHLSKGRWLQ	10	Unmodified	_HHLSKGRWLQ_					0	0	0		ENST00000306801.7_1_17:78939591-78939999:+|nuORF	ENST00000306801.7_1_17:78939591-78939999:+|nuORF	ENST00000306801.7_1_17:78939591-78939999:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	421.23602294921875	3	421.235267	1260.68397	-1.4546	-0.00061275	0.92789	0.00039086	-0.52675	-0.00022189	421.2356577330444	43.875	1.3617	40.867	40.589	41.951	-3.0074					71	26	3	0	0	0	0.43508	1	2146	2146		63.426	4.7969	1	663870			15941	10247	12957	12978	17750	17750					0.06405838851264889
HHSRSELAR	9	Unmodified	_HHSRSELAR_					0	0	0			REV__ENST00000397981.7_1_19:7977316-7977859:+|nuORF	REV__ENST00000397981.7_1_19:7977316-7977859:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.3265380859375	2	546.786496	1091.55844	1.1369	0.00062162	4.2315	0.0023137	5.3684	0.0029353	547.2899858486263	144.26	0.19824	144.26	144.11	144.31	0					5	3	2	0	0	0	0.027455	1	16845	16845		34.173	6.2903	1	15503	+		15942	25368	12958	12979	17751	17751					0.016321269950367423
HHVRMVLI	8	Unmodified	_HHVRMVLI_					0	0	0		AluSc8_dup20330|chr19:38289207-38289513:+|1.0995547902654217|0.0012056699720795|9.83|379.0|26|3|anti-sense	AluSc8_dup20330|chr19:38289207-38289513:+|1.0995547902654217|0.0012056699720795|9.83|379.0|26|3|anti-sense	AluSc8_dup20330|chr19:38289207-38289513:+|1.0995547902654217|0.0012056699720795|9.83|379.0|26|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	502.79779052734375	2	502.794746	1003.57494	0.47232	0.00023748	2.0017	0.0010064	2.474	0.0012439	502.79553120352085	161.11	1.2117	161.11	160.61	161.82	0					52	23	3	0	0	0	0.69415	1	18884	18884		44.531	3.9584	1	256090			15943	70	12959	12980	17752	17752					0.07329536627435118
HHVRPPAL	8	Unmodified	_HHVRPPAL_					0	0	0		ENST00000529704.5_1_11:67119307-67120167:-|nuORF;ENST00000534515.1_1_11:67119307-67119526:-|nuORF	ENST00000529704.5_1_11:67119307-67120167:-|nuORF	ENST00000529704.5_1_11:67119307-67120167:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.2537536621094	2	463.769586	925.524619	0.011503	5.3347E-06	-2.8177	-0.0013067	-2.8061	-0.0013014	463.7687956927798	60.311	1.2373	56.881	56.407	57.644	-3.43					58	24	4	0	0	0	0.028476	1	4018	4018		35.201	21.064	1	95018			15944	13279	12960	12981	17753	17753					0.05887750293936733
HHVRPPAL	8	Unmodified	_HHVRPPAL_					0	0	0		ENST00000529704.5_1_11:67119307-67120167:-|nuORF;ENST00000534515.1_1_11:67119307-67119526:-|nuORF	ENST00000529704.5_1_11:67119307-67120167:-|nuORF	ENST00000529704.5_1_11:67119307-67120167:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	463.769586	925.524619	-0.4715	-0.00021867	-1.0277	-0.00047662	-1.4992	-0.00069529	463.76902091496	59.576	1.3498	56.796	56.036	57.386	-2.7801	-0.0426	0.00019968	NaN	35.201	58	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43711			15945	13279	12960	12981							0.05887750293936733
HHWPAMKF	8	Unmodified	_HHWPAMKF_					0	0	0		ENST00000394318.7_1_17:37224095-37235479:-|nuORF;nc|ENSG00000161381|Q8IUK5-4|PLXDC1;ENSG00000161381|ENST00000315392|PLXDC1	ENST00000394318.7_1_17:37224095-37235479:-|nuORF	ENST00000394318.7_1_17:37224095-37235479:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.2606201171875	2	527.257997	1052.50144	-0.53863	-0.00028399	3.1296	0.0016501	2.591	0.0013661	527.2596101393228	56.969	2.3273	53.624	53.171	55.498	-3.3449					86	45	4	0	0	0	0.64377	1	3686	3686		54.765	3.4292	1	854440			15946	6127	12961	12982	17754	17754					-0.022710118150598646
HHWWKRSLWTR	11	Unmodified	_HHWWKRSLWTR_					0	0	0		ENST00000526626.6_1_11:118898396-118900027:-|nuORF	ENST00000526626.6_1_11:118898396-118900027:-|nuORF	ENST00000526626.6_1_11:118898396-118900027:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.2972412109375	3	531.616371	1591.82728	1.8044	0.00095926	-4.1861	-0.0022254	-2.3817	-0.0012662	531.9486005395008	82.951	0.64086	82.951	82.694	83.335	0					42	14	4	0	0	0	0.026448	1	8596	8596		9.2118	6.0005	1	2588300			15947	13223	12962	12983	17755	17755					0.055042659623268264
HHYIHHHAVP	10	Unmodified	_HHYIHHHAVP_					0	0	0		ENSG00000168646|ENST00000307078|AXIN2	ENSG00000168646|ENST00000307078|AXIN2	ENSG00000168646|ENST00000307078|AXIN2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	623.8732299804688	2	624.312681	1246.61081	-0.41785	-0.00026087	1.4868	0.00092825	1.069	0.00066738	624.3133456159063	117.44	1.6243	116.08	115.15	116.77	-1.3584					59	30	3	0	0	0	0.027147	1	10973	10973		19.36	0	1	37337			15948	6929	12963	12984	17756	17756					-0.0026328987135002535
HIAAAILKI	9	Unmodified	_HIAAAILKI_					0	0	0		ENSG00000170790|ENST00000641461|OR10A2	ENSG00000170790|ENST00000641461|OR10A2	ENSG00000170790|ENST00000641461|OR10A2	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.81317138671875	2	475.313295	948.612037	3.0507	0.0014501	-0.16064	-7.6355E-05	2.8901	0.0013737	475.3128842517739	89.826	1.3808	89.826	89.476	90.857	0					63	33	3	0	0	0	0.027462	1	9578	9578		50.025	12.996	1	2378200			15949	7136	12964	12985	17757	17757					0.1356753144484628
HIAGANGY	8	Unmodified	_HIAGANGY_					0	0	0		ENSG00000101445|ENST00000299824|PPP1R16B	ENSG00000101445|ENST00000299824|PPP1R16B	ENSG00000101445|ENST00000299824|PPP1R16B	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.2350769042969	2	401.695752	801.376952	1.4743	0.00059223	-0.90907	-0.00036517	0.56526	0.00022706	401.6952824496091	32.082	0.64614	32.082	31.906	32.553	0					24	12	3	0	0	0	0.028476	1	1390	1390		29.842	26.912	1	469390			15950	2178	12965	12986	17758	17758					-0.03168186030711695
HICIYVSYL	9	Unmodified	_HICIYVSYL_					0	0	0			REV__nc|ENSG00000258436|Q7Z5J4-4|RAI1	REV__nc|ENSG00000258436|Q7Z5J4-4|RAI1	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.8109130859375	2	555.786253	1109.55795	2.5827	0.0014354	2.9228	0.0016245	5.5055	0.0030599	555.7875940038927	98.867	0.64805	98.867	98.506	99.154	0					20	15	2	0	0	0	0.027462	1	10904	10904		33.516	12.569	1	614760	+		15951	29179	12966	12987	17759	17759					0.0075557123095677525
HIDDFASR	8	Unmodified	_HIDDFASR_					0	0	0			REV__tr|A0A7D6ZX68|A0A7D6ZX68_9CLOTDiadenylatecyclaseOS=ClostridiumintestinaleOX=36845GN=dacAPE=3SV=1	REV__tr|A0A7D6ZX68|A0A7D6ZX68_9CLOTDiadenylatecyclaseOS=ClostridiumintestinaleOX=36845GN=dacAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	480.73028564453125	2	480.730323	959.446094	-0.0368	-1.7691E-05	0.33778	0.00016238	0.30098	0.00014469	480.73023067655464	30.362	0.74428	30.362	30.136	30.881	0					21	14	3	0	0	0	0.72896	1	1172	1172		37.159	0.71236	1	131380	+		15952	32317	12967	12988	17760	17760					-0.035251468018145715
HIDDLGLVSAG	11	Unmodified	_HIDDLGLVSAG_					0	0	0			REV__nc|ENSG00000164362|O14746-3|TERT	REV__nc|ENSG00000164362|O14746-3|TERT	MULTI-SECPEP	OvCa9_classI_Rep3	3	547.7969970703125	2	548.785296	1095.55604	-1.0445	-0.00057323	1.0664	0.00058525	0.021908	1.2023E-05	548.7856019942568	90.088	0.46181	88.008	87.747	88.209	-2.0805					13	8	2	0	0	0	0.025701	1	5575	5575		36.447	5.8779	1	21600	+		15953	20982	12968	12989	17761	17761					0.012082337467063553
HIDEINQKL	9	Unmodified	_HIDEINQKL_					0	0	0			REV__CON__P0C1U8	REV__CON__P0C1U8	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.3290405273438	2	555.301113	1108.58767	2.604	0.001446	-1.9067	-0.0010588	0.69726	0.00038719	555.3014455626953	94.81	0.43118	94.81	94.56	94.992	0					18	9	2	0	0	0	0.027185	1	10312	10312		93.195	18.152	1	231160	+	+	15954	16192	12969	12990	17762	17762					0.03772226500677789
HIEDEDLMLL	10	Unmodified	_HIEDEDLMLL_					0	0	0			REV__nc|ENSG00000197283|Q96PV0-2|SYNGAP1	REV__nc|ENSG00000197283|Q96PV0-2|SYNGAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	614.2987670898438	2	614.299921	1226.58529	1.2843	0.00078893	-1.5115	-0.00092853	-0.22725	-0.0001396	614.2988934687307	143.44	0.98985	143.44	143.12	144.11	0					43	19	3	0	0	0	0.52321	1	16754	16754		51.335	5.3632	1	466320	+		15955	22908	12970	12991	17763	17763					-0.018939900193117865
HIEVLHYL	8	Unmodified	_HIEVLHYL_					0	0	0		ENSG00000097096|ENST00000341460|SYDE2;nc|ENSG00000105137|Q6ZW31-2|SYDE1;ENSG00000105137|ENST00000342784|SYDE1	ENSG00000097096|ENST00000341460|SYDE2;nc|ENSG00000105137|Q6ZW31-2|SYDE1	ENSG00000097096|ENST00000341460|SYDE2	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.31048583984375	2	512.284734	1022.55492	2.5204	0.0012912	2.0995	0.0010755	4.6199	0.0023667	512.7870048041619	108.1	0.38323	108.1	107.82	108.2	0					10	8	2	0	0	0	0.028476	1	12182	12182		37.028	20.555	1	59176			15956	1957;2424	12971	12992	17764	17764					0.04454064168453442
HIFHLHVK	8	Unmodified	_HIFHLHVK_					0	0	0		Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|3|1|sense	Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|3|1|sense	Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|3|1|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	515.7992553710938	2	515.800886	1029.58722	-0.20737	-0.00010696	-3.8278	-0.0019744	-4.0351	-0.0020813	515.7987623798045	46.653	1.1396	46.653	46.412	47.551	0					57	25	3	0	0	0	0.60486	1	3305	3305		62.978	2.6845	1	1604600			15957	14373	12972	12993	17765	17765					0.07360896362138192
HIFLLRPGCN	10	Unmodified	_HIFLLRPGCN_					0	0	0		ENST00000497027.5_1_3:55514830-55515374:-|nuORF	ENST00000497027.5_1_3:55514830-55515374:-|nuORF	ENST00000497027.5_1_3:55514830-55515374:-|nuORF	MSMS	OvCa99_classI_Rep5	1	585.31689453125	2	585.316043	1168.61753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.12	1	138.12	137.62	138.62	0								0	0	0	0.13545	1	16116	16116		29.15	0	1				15958	12799	12973	12994	17766	17766					0.03996886965046542
HIFQALEWA	9	Unmodified	_HIFQALEWA_					0	0	0			REV__ENSG00000135587|ENST00000258052|SMPD2	REV__ENSG00000135587|ENST00000258052|SMPD2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	558.3353881835938	2	557.787641	1113.56073	0.76948	0.0004292	-1.8217	-0.0010161	-1.0522	-0.00058691	557.7865924458964	57.438	2.0263	54.093	53.171	55.197	-3.3449					61	39	2	0	0	0	0.027462	1	3627	3627		29.15	19.444	1	88668	+		15959	19301	12974	12995	17767	17767					0.008491626801287566
HIFQALEWA	9	Unmodified	_HIFQALEWA_					0	0	0			REV__ENSG00000135587|ENST00000258052|SMPD2	REV__ENSG00000135587|ENST00000258052|SMPD2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	557.787641	1113.56073	-0.17846	-9.9545E-05	-0.92061	-0.0005135	-1.0991	-0.00061305	557.7868427602912	56.991	1.0903	54.199	53.535	54.625	-2.7921	0.052814	0.00084429	NaN	21.96	38	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18165	+		15960	19301	12974	12995							0.008491626801287566
HIFYLLKE	8	Unmodified	_HIFYLLKE_					0	0	0		ENSG00000213186|ENST00000309784|TRIM59	ENSG00000213186|ENST00000309784|TRIM59	ENSG00000213186|ENST00000309784|TRIM59	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.322021484375	2	531.80276	1061.59097	-0.056791	-3.0202E-05	2.5217	0.0013411	2.4649	0.0013109	532.3048595278748	44.986	0.27452	44.986	44.84	45.114	0					7	5	2	0	0	0	0.028476	1	3077	3077		33.516	5.6333	1	31011			15961	9120	12975	12996	17768	17768					0.06263521345317713
HIFYLLKEFVW	11	Unmodified	_HIFYLLKEFVW_					0	0	0		ENSG00000213186|ENST00000309784|TRIM59	ENSG00000213186|ENST00000309784|TRIM59	ENSG00000213186|ENST00000309784|TRIM59	MULTI-MSMS	OvCa9_classI_Rep3	3	498.9444580078125	3	498.942979	1493.80711	-0.78365	-0.000391	1.5284	0.00076258	0.74474	0.00037158	498.94375426248735	81.253	6.1948	78.93	78.543	84.738	-2.3226					323	125	6	0	0	0	0.72472	1	4511	4511		19.263	1.4295	1	6828400			15962	9120	12976	12997	17769	17769					0.07995657459150607
HIGSGRERDD	10	Unmodified	_HIGSGRERDD_					0	0	0			REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	MULTI-MSMS	OvCa9_classI_Rep3	3	571.2695922851562	2	571.270875	1140.5272	1.0495	0.00059955	-4.129	-0.0023588	-3.0795	-0.0017592	571.2685483979973	123.92	1.2425	122.88	122.51	123.75	-1.0377					61	23	3	0	0	0	0.62712	1	9584	9584		38.754	0.94209	1	128660	+		15963	16668	12977	12998	17770	17770					-0.03744490829717506
HIHFFSNIEF	10	Unmodified	_HIHFFSNIEF_					0	0	0		tr|A0A7D6VQX8|A0A7D6VQX8_9CLOTCobyrinatea,c-diamidesynthaseOS=ClostridiumintestinaleOX=36845GN=cbiAPE=3SV=1	tr|A0A7D6VQX8|A0A7D6VQX8_9CLOTCobyrinatea,c-diamidesynthaseOS=ClostridiumintestinaleOX=36845GN=cbiAPE=3SV=1	tr|A0A7D6VQX8|A0A7D6VQX8_9CLOTCobyrinatea,c-diamidesynthaseOS=ClostridiumintestinaleOX=36845GN=cbiAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	646.322265625	2	645.81693	1289.61931	1.7972	0.0011606	0.30148	0.0001947	2.0986	0.0013553	646.3187485771498	112.22	1.5487	112.22	111.65	113.2	0					84	33	4	0	0	0	0.67931	1	12775	12775		32.812	1.1781	1	338780			15964	34876	12978	12999	17771	17771					-0.013917807453935893
HIHKSLIGK	9	Unmodified	_HIHKSLIGK_					0	0	0		nc|ENSG00000105968|Q71UI9-4|H2AZ2;ENSG00000164032|ENST00000296417|H2AZ1;ENSG00000105968|ENST00000308153|H2AZ2;ENST00000511319.5_1_4:100869621-100871200:-|nuORF;nc|ENSG00000105968|Q71UI9-3|H2AZ2	nc|ENSG00000105968|Q71UI9-4|H2AZ2	nc|ENSG00000105968|Q71UI9-4|H2AZ2	MULTI-MSMS	OvCa9_classI_Rep2	2	516.8185424804688	2	516.819276	1031.624	-2.2063	-0.0011403	1.832	0.0009468	-0.37432	-0.00019346	516.8201011099436	36.791	3.1093	34.081	33.844	36.953	-2.7097					122	62	3	0	0	0	0.2422	10	1624	1595;1600;1606;1612;1619;1624;1631;1637;1643;1657		69.628	15.877	1	185190			15965	2519	12979	13000	17772;17773;17774;17775;17776;17777;17778;17779;17780;17781	17777					0.10945148188056919
HIHKSLIGK	9	Unmodified	_HIHKSLIGK_					0	0	0		nc|ENSG00000105968|Q71UI9-4|H2AZ2;ENSG00000164032|ENST00000296417|H2AZ1;ENSG00000105968|ENST00000308153|H2AZ2;ENST00000511319.5_1_4:100869621-100871200:-|nuORF;nc|ENSG00000105968|Q71UI9-3|H2AZ2	nc|ENSG00000105968|Q71UI9-4|H2AZ2	nc|ENSG00000105968|Q71UI9-4|H2AZ2	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.820068359375	2	516.819276	1031.624	0.68266	0.00035281	-1.1379	-0.0005881	-0.45526	-0.00023529	516.8186281591643	36.847	2.2875	33.954	33.546	35.833	-2.8925					134	45	4	0	0	0	0.094791	8	1283	1283;1291;1303;1315;1327;1339;1352;1366		98.582	26.705	1	455730			15966	2519	12979	13000	17782;17783;17784;17785;17786;17787;17788;17789	17782					0.10945148188056919
HIHPLNVW	8	Unmodified	_HIHPLNVW_					0	0	0			REV__ENSG00000178502|ENST00000319121|KLHL11	REV__ENSG00000178502|ENST00000319121|KLHL11	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7490539550781	2	508.277244	1014.53993	-0.89187	-0.00045332	-1.864	-0.00094744	-2.7559	-0.0014008	508.77789842587197	34.841	0.8003	34.841	34.539	35.339	0					45	16	5	0	0	0	0.028476	1	1762	1762		39.021	0	1	1058400	+		15967	22061	12980	13001	17790	17790					0.03324617091129767
HIHPLSSDL	9	Unmodified	_HIHPLSSDL_					0	0	0		ENST00000369572.3_1_6:88085407-88108050:+|nuORF	ENST00000369572.3_1_6:88085407-88108050:+|nuORF	ENST00000369572.3_1_6:88085407-88108050:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.785400390625	2	509.769448	1017.52434	-1.2767	-0.00065082	1.3513	0.00068885	0.074599	3.8029E-05	509.76959602702357	44.984	0.98589	41.945	41.714	42.7	-3.0385					23	18	2	0	0	0	0.027462	1	2255	2255		37.159	6.6555	1	40324			15968	10898	12981	13002	17791	17791					0.01628285783431238
HIIATSKSL	9	Unmodified	_HIIATSKSL_					0	0	0		nc|ENSG00000105856|O60381-2|HBP1;nc|ENSG00000105856|O60381-3|HBP1;ENSG00000105856|ENST00000222574|HBP1	nc|ENSG00000105856|O60381-2|HBP1	nc|ENSG00000105856|O60381-2|HBP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.2709655761719	2	485.290017	968.565481	-0.41282	-0.00020034	-0.16452	-7.9841E-05	-0.57734	-0.00028018	485.28956757567175	48.702	0.74734	48.702	48.372	49.119	0					31	16	3	0	0	0	0.027425	1	3595	3595		69.628	27.231	1	920190			15969	2509	12982	13003	17792	17792					0.07994046822898326
HIIDKVNW	8	Unmodified	_HIIDKVNW_					0	0	0		tr|A0A553SLP9|A0A553SLP9_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_21075PE=4SV=1	tr|A0A553SLP9|A0A553SLP9_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_21075PE=4SV=1	tr|A0A553SLP9|A0A553SLP9_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_21075PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	511.814208984375	2	512.782359	1023.55016	-0.92922	-0.00047649	-3.3988	-0.0017428	-4.328	-0.0022193	512.78047182388	49.539	1.24	46.779	46.473	47.713	-2.7603					52	23	4	0	0	0	0.028476	1	3214	3214		38.806	0	1	98290			15970	33750	12983	13004	17793	17793					0.03933180025705951
HIIKMQKVI	9	Unmodified	_HIIKMQKVI_					0	0	0			REV__GNAI2|p.D273Pfs*3|1|0.15|ENSG00000114353|chr3:50257030-50257031|GA/-|frameshift_variant	REV__GNAI2|p.D273Pfs*3|1|0.15|ENSG00000114353|chr3:50257030-50257031|GA/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.3291625976562	2	555.346812	1108.67907	2.3806	0.001322	-0.47669	-0.00026473	1.9039	0.0010573	555.3453465532375	95.164	0.29257	95.164	94.992	95.284	0					8	6	2	0	0	0	0.027456	1	10390	10390		47.916	0	1	173580	+		15971	16784	12984	13005	17794	17794					0.12907818664302795
HIILGLGGLV	10	Unmodified	_HIILGLGGLV_					0	0	0		ENST00000578921.5_1_18:9859997-9860030:+|nuORF	ENST00000578921.5_1_18:9859997-9860030:+|nuORF	ENST00000578921.5_1_18:9859997-9860030:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.77838134765625	2	496.318577	990.622602	2.4408	0.0012114	-0.2265	-0.00011242	2.2143	0.001099	496.3183297568844	75.736	0.55196	75.736	75.444	75.996	0					31	13	3	0	0	0	0.026672	1	7574	7574		44.531	8.9128	1	847670			15972	13974	12985	13006	17795	17795					0.12691514099287815
HIIMHKLLS	9	Unmodified	_HIIMHKLLS_					0	0	0			REV__ENSG00000122482|ENST00000337393|ZNF644	REV__ENSG00000122482|ENST00000337393|ZNF644	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.3204956054688	2	546.323337	1090.63212	-0.48802	-0.00026662	-3.2771	-0.0017904	-3.7651	-0.002057	546.3213677654991	102.25	1.8325	100.05	99.676	101.51	-2.1994					77	34	3	0	0	0	0.63422	1	9210	9210		27.882	1.0861	1	124680	+		15973	18599	12986	13007	17796	17796					0.09042959113162397
HIIRGYSV	8	Unmodified	_HIIRGYSV_					0	0	0		ENSG00000107611|ENST00000377833|CUBN	ENSG00000107611|ENST00000377833|CUBN	ENSG00000107611|ENST00000377833|CUBN	MULTI-MSMS	OvCa99_classI_Rep5	1	472.770263671875	2	472.769252	943.52395	0.31769	0.0001502	-0.2141	-0.00010122	0.10359	4.8975E-05	472.76893237104906	57.625	1.3487	57.625	57.264	58.613	0					87	31	4	0	0	0	0.47599	1	4862	4862		79.939	3.0926	1	4633200			15974	2605	12987	13008	17797	17797					0.04992910854230104
HIISHFNEL	9	Unmodified	_HIISHFNEL_					0	0	0			REV__nc|ENSG00000138617|Q8N5Y8-3|PARP16	REV__nc|ENSG00000138617|Q8N5Y8-3|PARP16	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.7705078125	2	555.290548	1108.56654	0.19762	0.00010974	-2.7706	-0.0015385	-2.573	-0.0014288	555.2888831535979	105.44	1.0856	105.44	104.62	105.7	0					36	24	2	0	0	0	0.027462	1	11822	11822		42.396	0	1	521860	+		15975	19549	12988	13009	17798	17798					0.01660261191796053
HIKSAKLLI	9	Unmodified	_HIKSAKLLI_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN-WDR67|2|fusion;UTRN-WDR67|1|fusion	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OvCa99_classI_Rep5	1	511.8408203125	2	511.839677	1021.6648	-0.44243	-0.00022645	0.17751	9.0856E-05	-0.26492	-0.0001356	511.83965682632777	55.296	1.2353	55.296	55.064	56.3	0					56	29	4	0	0	0	0.1944	1	4512	4512		77.318	31.366	1	2131300			15976	5647	12989	13010	17799	17799					0.1548348950767604
HIKVFGVGHI	10	Unmodified	_HIKVFGVGHI_					0	0	0			REV__ANO1|p.I577Sfs*11|1|0.24|ENSG00000131620|chr11:70161311-70161312|-/GC|frameshift_variant	REV__ANO1|p.I577Sfs*11|1|0.24|ENSG00000131620|chr11:70161311-70161312|-/GC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8328857421875	2	553.827101	1105.63965	1.4062	0.00077877	3.9255	0.0021741	5.3317	0.0029528	553.8291816775361	139.45	3.0735	137.95	136.76	139.84	-1.4952					150	61	3	0	0	0	0.65434	1	13517	13517		35.618	2.1027	1	110800	+		15977	15638	12990	13011	17800	17800					0.09105434705088555
HIKVSLEE	8	Unmodified	_HIKVSLEE_					0	0	0		ENSG00000165240|ENST00000341514|ATP7A;nc|ENSG00000165240|Q04656-2|ATP7A;nc|ENSG00000165240|Q04656-3|ATP7A;nc|ENSG00000165240|Q04656-6|ATP7A;ATP7A|p.Q121Rfs*5|1|0.22|ENSG00000165240|chrX:77988482-77988482|C/-|frameshift_variant;nc|ENSG00000165240|Q04656-5|ATP7A	ENSG00000165240|ENST00000341514|ATP7A	ENSG00000165240|ENST00000341514|ATP7A	MULTI-MSMS	OvCa99_classI_Rep5	1	477.76861572265625	2	477.766374	953.518196	2.2078	0.0010548	1.5569	0.00074381	3.7646	0.0017986	477.76679802070345	85.023	0.62171	85.023	84.758	85.38	0					27	14	3	0	0	0	0.66704	1	8912	8912		50.025	4.0726	1	1081600			15978	6539	12991	13012	17801	17801					0.0395776755190127
HILHQCSEP	9	Unmodified	_HILHQCSEP_					0	0	0			REV__ENSG00000101751|ENST00000579534|POLI	REV__ENSG00000101751|ENST00000579534|POLI	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.808837890625	2	532.253108	1062.49166	-0.91166	-0.00048523	-0.40954	-0.00021798	-1.3212	-0.00070321	532.2529227617566	78.346	0.47331	75.53	75.361	75.834	-2.8165					15	9	2	0	0	0	0.027426	1	6310	6310		63.306	15.649	1	40020	+		15979	17516	12992	13013	17802	17802					-0.0370824461108441
HILHSIVTW	9	Unmodified	_HILHSIVTW_					0	0	0			REV__tr|A0A553SG89|A0A553SG89_NIACIPolyprenylsynthetasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10395PE=4SV=1	REV__tr|A0A553SG89|A0A553SG89_NIACIPolyprenylsynthetasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10395PE=4SV=1	MSMS	OvCa9_classI_Rep2	2	553.3091430664062	2	553.311284	1104.60801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.603	1	59.859	59.359	60.359	-2.7444								0	0	0	0.17704	1	4704	4704		38.806	1.647	1		+		15980	29673	12993	13014	17803	17803					0.05989441951146546
HILKLALLDS	10	Unmodified	_HILKLALLDS_					0	0	0			REV__nc|ENSG00000205176|Q8IX06|REXO1L1P	REV__nc|ENSG00000205176|Q8IX06|REXO1L1P	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.846435546875	2	561.847699	1121.68084	-2.5142	-0.0014126	-1.0339	-0.00058092	-3.5482	-0.0019935	561.8469845001015	152.99	1.31	151.56	151.24	152.55	-1.4351					96	32	4	0	0	0	0.81992	1	15161	15161		16.473	0	1	225430	+		15981	29107	12994	13015	17804	17804					0.12487150953870696
HILKQVFEL	9	Unmodified	_HILKQVFEL_					0	0	0		ENST00000599145.1_1_19:58927211-58927334:+|nuORF	ENST00000599145.1_1_19:58927211-58927334:+|nuORF	ENST00000599145.1_1_19:58927211-58927334:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.3115844726562	2	563.834591	1125.65463	3.2189	0.0018149	-2.9115	-0.0016416	0.30737	0.00017331	563.8328211085992	96.318	0.29144	96.318	96.168	96.459	0					10	6	2	0	0	0	0.027447	1	10531	10531		56.721	8.8055	1	174770			15982	14203	12995	13016	17805	17805					0.09682881782418917
HILKRAMILGS	11	Unmodified	_HILKRAMILGS_					0	0	0			REV__MAP2K2-INSR|1|fusion	REV__MAP2K2-INSR|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8692626953125	2	619.873725	1237.7329	-4.5979	-0.0028501	-2.182	-0.0013525	-6.7798	-0.0042026	619.8720691913712	155.19	0.9135	153.7	153.35	154.26	-1.4911					51	23	3	0	0	0	0.72466	1	15365	15365		19.997	5.1319	1	42254	+		15983	28640	12996	13017	17806	17806					0.12353991096006212
HILLKSSQSFG	11	Unmodified	_HILLKSSQSFG_					0	0	0			REV__ENSG00000196793|ENST00000374446|ZNF239	REV__ENSG00000196793|ENST00000374446|ZNF239	MULTI-SECPEP	OvCa9_classI_Rep4_	4	607.8488159179688	2	608.837862	1215.66117	-0.27895	-0.00016984	-3.4325	-0.0020898	-3.7115	-0.0022597	608.8356233513908	69.898	1.1213	66.417	66.153	67.275	-3.4812					52	22	3	0	0	0	0.025529	1	5312	5312		67.494	8.7117	1	279200	+		15984	22865	12997	13018	17807	17807					0.061967749431460106
HILNEQSQL	9	Unmodified	_HILNEQSQL_					0	0	0			REV__nc|ENSG00000182923|Q96MT8-4|CEP63	REV__nc|ENSG00000182923|Q96MT8-4|CEP63	MULTI-MSMS	OvCa99_classI_Rep5	1	541.2871704101562	2	541.285463	1080.55637	-0.16278	-8.811E-05	-0.25257	-0.00013671	-0.41535	-0.00022482	541.2853031206738	62.016	1.1951	62.016	61.665	62.86	0					69	28	4	0	0	0	0.026923	1	5488	5488		138.83	2.5574	1	14726000	+		15985	22327	12998	13019	17808	17808					0.019316534665676954
HILQHIQLRS	10	Unmodified	_HILQHIQLRS_					0	0	0			REV__ENSG00000263002|ENST00000426739|ZNF234	REV__ENSG00000263002|ENST00000426739|ZNF234	MULTI-MSMS	OvCa9_classI_Rep3	3	622.8656005859375	2	622.864746	1243.71494	0.88915	0.00055382	1.3388	0.00083391	2.228	0.0013877	622.8654000115959	131.71	1.5392	130.58	130.24	131.78	-1.1249					80	30	4	0	0	0	0.6104	1	10491	10491		40.778	0.71999	1	257180	+		15986	23577	12999	13020	17809	17809					0.10282992165502947
HILSSKRKK	9	Unmodified	_HILSSKRKK_					0	0	0			REV__L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|161|3|sense	REV__L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|161|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.8325805664062	2	548.851107	1095.68766	-1.1331	-0.00062189	1.0707	0.00058763	-0.062428	-3.4264E-05	548.8502812106155	27.816	0.24995	27.816	27.691	27.941	0					7	4	2	0	0	0	0.027455	1	850	850		60.972	3.1607	1	15109	+		15987	28531	13000	13021	17810	17810					0.14364508625135386
HILVFLCFLFI	11	Unmodified	_HILVFLCFLFI_					0	0	0		ENST00000371113.8_3_X:128724255-128724522:+|nuORF	ENST00000371113.8_3_X:128724255-128724522:+|nuORF	ENST00000371113.8_3_X:128724255-128724522:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	455.26544189453125	3	455.598155	1363.77264	-0.16404	-7.4737E-05	0.46806	0.00021325	0.30402	0.00013851	455.59833771591104	23.845	0.28951	23.845	23.697	23.987	0					7	5	2	0	0	0	0.026403	1	385	385		15.333	0	1	17522			15988	10947	13001	13022	17811	17811					0.10530118046722237
HIMILELKL	9	Unmodified	_HIMILELKL_					0	0	0			REV__ENST00000502904.5_1_5:179045169-179045340:-|nuORF	REV__ENST00000502904.5_1_5:179045169-179045340:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.3290405273438	2	555.341195	1108.66784	2.6685	0.0014819	1.8715	0.0010393	4.54	0.0025212	555.3421170807909	94.71	0.29868	94.71	94.433	94.732	0					8	6	2	0	0	0	0.027232	1	10312	10312		87.754	27.46	1	179900	+		15989	26833	13002	13023	17812	17812					0.11784996570145267
HIMPTVHTV	9	Unmodified	_HIMPTVHTV_					0	0	0		ENSG00000101544|ENST00000262198|ADNP2	ENSG00000101544|ENST00000262198|ADNP2	ENSG00000101544|ENST00000262198|ADNP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.2507934570312	2	517.776219	1033.53789	-0.45808	-0.00023719	0.32314	0.00016731	-0.13495	-6.9873E-05	517.7762665888921	62.102	0.42704	62.102	61.826	62.253	0					15	9	2	0	0	0	0.027441	1	5508	5508		55.504	5.4797	1	568560			15990	2185	13003	13024	17813	17813					0.022458202910002
HINEQLGQL	9	Unmodified	_HINEQLGQL_					0	0	0			REV__ENST00000480336.1_1_1:32950727-32950793:+|nuORF	REV__ENST00000480336.1_1_1:32950727-32950793:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	526.282470703125	2	526.28018	1050.54581	-0.89265	-0.00046978	0.95734	0.00050383	0.064689	3.4045E-05	526.2804551438303	68.208	1.3439	68.208	67.762	69.106	0					66	32	5	0	0	0	0.3076	1	6442	6442		62.107	0	1	13467000	+		15991	26458	13004	13025	17814	17814					0.022556708121328484
HINGRVLYY	9	Unmodified	_HINGRVLYY_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	OvCa9_classI_Rep2	2	567.806640625	2	567.806365	1133.59818	-0.68721	-0.0003902	0.078838	4.4765E-05	-0.60837	-0.00034544	567.8063905134725	69.084	9.6506	66.464	65.77	75.42	-2.6203					413	186	6	0	0	0	0.048552	31	5469	5454;5457;5463;5469;5475;5481;5487;5493;5499;5506;5512;5518;5525;5532;5536;5542;5549;5554;5561;5568;5574;5580;5585;5591;5597;5603;5609;5617;5629;5634;5647		119.56	62.422	1	4386800			15992	8656	13005	13026	17815;17816;17817;17818;17819;17820;17821;17822;17823;17824;17825;17826;17827;17828;17829;17830;17831;17832;17833;17834;17835;17836;17837;17838;17839;17840;17841;17842;17843;17844;17845	17818					0.03672253945751436
HINGRVLYY	9	Unmodified	_HINGRVLYY_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	OvCa9_classI_Rep3	3	567.8070068359375	2	567.806365	1133.59818	0.37724	0.0002142	-0.65111	-0.0003697	-0.27387	-0.00015551	567.8060000872808	69.253	6.911	66.439	66.063	72.974	-2.8144					296	138	6	0	0	0	0.032351	23	3096	3054;3059;3065;3071;3077;3084;3090;3096;3102;3108;3114;3121;3127;3134;3177;3181;3187;3199;3205;3211;3217;3224;3261		133.47	72.497	1	2051600			15993	8656	13005	13026	17846;17847;17848;17849;17850;17851;17852;17853;17854;17855;17856;17857;17858;17859;17860;17861;17862;17863;17864;17865;17866;17867;17868	17853					0.03672253945751436
HINGRVLYY	9	Unmodified	_HINGRVLYY_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.8077392578125	2	567.806365	1133.59818	-0.19913	-0.00011307	-0.26064	-0.00014799	-0.45977	-0.00026106	567.8061660850349	70.27	6.2873	66.789	66.393	72.68	-3.4812					360	129	6	0	0	0	0.048552	16	5299	5276;5287;5299;5311;5323;5336;5350;5362;5374;5385;5396;5409;5421;5433;5446;5470		119.56	48.261	1	5481200			15994	8656	13005	13026	17869;17870;17871;17872;17873;17874;17875;17876;17877;17878;17879;17880;17881;17882;17883;17884	17871					0.03672253945751436
HINICICNI	9	Unmodified	_HINICICNI_					0	0	0		L1M1_dup621|chr1:224985612-224987088:+|1.1406864670825911|0.0275683224481481|5.37|427.0|12|1|sense	L1M1_dup621|chr1:224985612-224987088:+|1.1406864670825911|0.0275683224481481|5.37|427.0|12|1|sense	L1M1_dup621|chr1:224985612-224987088:+|1.1406864670825911|0.0275683224481481|5.37|427.0|12|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.3036499023438	2	521.762255	1041.50996	1.9871	0.0010368	-0.40773	-0.00021274	1.5794	0.00082407	522.2638439011295	106.38	0.48328	106.38	106.1	106.58	0					14	10	2	0	0	0	0.027441	1	11936	11936		65.803	32.288	1	288340			15995	14536	13006	13027	17885	17885					-0.009138259607198052
HINLFRAR	8	Unmodified	_HINLFRAR_					0	0	0		tr|A0A553SQW6|A0A553SQW6_NIACIRESdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07425PE=4SV=1	tr|A0A553SQW6|A0A553SQW6_NIACIRESdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07425PE=4SV=1	tr|A0A553SQW6|A0A553SQW6_NIACIRESdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07425PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.7959594726562	2	513.801417	1025.58828	-0.53703	-0.00027592	-1.354	-0.00069566	-1.891	-0.00097159	513.8006316737736	38.785	0.53135	38.785	38.531	39.063	0					19	11	3	0	0	0	0.028476	1	2262	2262		28.254	2.8041	1	102460			15996	34207	13007	13028	17886	17886					0.07651110731012523
HIPFPPTL	8	Unmodified	_HIPFPPTL_					0	0	0		nc|ENSG00000168356|Q9UI33-3|SCN11A;ENSG00000168356|ENST00000302328|SCN11A	nc|ENSG00000168356|Q9UI33-3|SCN11A	nc|ENSG00000168356|Q9UI33-3|SCN11A	MULTI-SECPEP	OvCa99_classI_Rep5	1	461.7915344238281	2	461.263271	920.511988	2.1151	0.0009756	-4.441	-0.0020485	-2.3259	-0.0010729	461.26139590943984	95.306	0.53817	95.306	95.161	95.699	0					13	12	2	0	0	0	0.028476	1	10436	10436		28.254	0	1	119850			15997	6895	13008	13029	17887	17887					0.048552941110415304
HIPNIFQKI	9	Unmodified	_HIPNIFQKI_					0	0	0		FNBP1|p.Q503Pfs*31|1|0.07|ENSG00000187239|chr9:129900470-129900471|-/GA|frameshift_variant;nc|ENSG00000187239|Q96RU3-4|FNBP1;nc|ENSG00000187239|Q96RU3-3|FNBP1;nc|ENSG00000187239|Q96RU3-5|FNBP1;nc|ENSG00000187239|Q96RU3-2|FNBP1;ENSG00000187239|ENST00000446176|FNBP1	FNBP1|p.Q503Pfs*31|1|0.07|ENSG00000187239|chr9:129900470-129900471|-/GA|frameshift_variant	FNBP1|p.Q503Pfs*31|1|0.07|ENSG00000187239|chr9:129900470-129900471|-/GA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	555.3291625976562	2	555.326934	1108.63931	2.5192	0.001399	-0.5018	-0.00027866	2.0174	0.0011203	555.3266204801115	94.98	4.6235	94.98	93.883	98.506	0					299	108	6	0	0	0	0.19758	1	10360	10360		76.774	4.8967	1	31877000			15998	8394	13009	13030	17888	17888					0.08934014985243266
HIPSLATVI	9	Unmodified	_HIPSLATVI_					0	0	0		nc|ENSG00000110931|Q96RR4-7|CAMKK2;nc|ENSG00000110931|Q96RR4-2|CAMKK2;nc|ENSG00000110931|Q96RR4-3|CAMKK2;ENSG00000110931|ENST00000404169|CAMKK2	nc|ENSG00000110931|Q96RR4-7|CAMKK2	nc|ENSG00000110931|Q96RR4-7|CAMKK2	MULTI-MSMS	OvCa9_classI_Rep2	2	475.7874450683594	2	475.78711	949.559667	-1.1235	-0.00053453	1.082	0.00051482	-0.041421	-1.9707E-05	475.7874263780674	139.39	1.0332	139.16	138.81	139.84	-0.22696					43	20	3	0	0	0	0.59983	1	13913	13913		31.955	2.1133	1	86387			15999	14958	13010	13031	17889	17889					0.08286948311229025
HIPVQTITFKL	11	Unmodified	_HIPVQTITFKL_					0	0	0			REV__ENSG00000150893|ENST00000280481|FREM2	REV__ENSG00000150893|ENST00000280481|FREM2	MULTI-MSMS	OvCa9_classI_Rep3	3	432.92578125	3	432.927329	1295.76016	1.6734	0.00072447	-3.7511	-0.001624	-2.0777	-0.0008995	432.9256048538329	64.918	2.5849	61.925	61.446	64.031	-2.9933					130	50	4	0	0	0	0.70848	1	2562	2562		26.75	1.6237	1	231790	+		16000	20206	13011	13032	17890	17890					0.12410797908023596
HIQGQPGLQLW	11	Unmodified	_HIQGQPGLQLW_					0	0	0			REV__ENST00000461200.5_1_11:2337849-2338684:+|nuORF	REV__ENST00000461200.5_1_11:2337849-2338684:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	638.843017578125	2	638.843479	1275.67241	-0.72166	-0.00046103	0.68613	0.00043833	-0.035522	-2.2693E-05	638.8438331848862	101.97	1.8306	100.44	99.845	101.68	-1.5211					95	34	5	0	0	0	0.67529	1	6984	6984		37.812	0	1	808980	+		16001	26094	13012	13033	17891	17891					0.04559597037291496
HIQGYENI	8	Unmodified	_HIQGYENI_					0	0	0			REV__nc|ENSG00000132031|O15232-2|MATN3	REV__nc|ENSG00000132031|O15232-2|MATN3	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.3116760253906	2	487.240524	972.466495	-0.026214	-1.2772E-05	-1.8748	-0.00091348	-1.901	-0.00092625	487.23948653498513	32.292	0.69144	32.292	32.105	32.796	0					28	13	3	0	0	0	0.028476	1	1387	1387		65.803	23.407	1	86613	+		16002	19051	13013	13034	17892	17892					-0.020839761420006653
HIRHQRIH	8	Unmodified	_HIRHQRIH_					0	0	0		ENSG00000254004|ENST00000523638|ZNF260	ENSG00000254004|ENST00000523638|ZNF260	ENSG00000254004|ENST00000523638|ZNF260	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.8325805664062	2	548.81539	1095.61623	-1.1272	-0.00061863	-3.2055	-0.0017592	-4.3327	-0.0023779	548.8139611767145	27.866	0.20024	27.866	27.741	27.941	0					5	3	2	0	0	0	0.028476	1	850	850		71.378	8.3995	1	12592			16003	9441	13014	13035	17893	17893					0.07224433711121492
HIRILLWD	8	Unmodified	_HIRILLWD_					0	0	0		ENSG00000183826|ENST00000481247|BTBD9;nc|ENSG00000183826|Q96Q07-3|BTBD9;nc|ENSG00000183826|Q96Q07-2|BTBD9	ENSG00000183826|ENST00000481247|BTBD9	ENSG00000183826|ENST00000481247|BTBD9	MULTI-MSMS	OvCa9_classI_Rep2	2	533.3113403320312	2	533.313826	1064.6131	-1.0201	-0.00054405	-3.0802	-0.0016427	-4.1003	-0.0021868	533.3120608238993	40.28	1.7779	37.571	37.202	38.98	-2.7097					89	35	4	0	0	0	0.72922	1	2009	2009		37.028	1.4102	1	555430			16004	8112	13015	13036	17894	17894					0.08337745813764741
HIRLVSITL	9	Unmodified	_HIRLVSITL_					0	0	0			REV__ENST00000483904.5_1_2:24866846-24881636:+|nuORF	REV__ENST00000483904.5_1_2:24866846-24881636:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.280517578125	2	526.334759	1050.65496	0.89662	0.00047192	1.3686	0.00072034	2.2652	0.0011923	526.3353639781461	83.514	0.80202	83.514	83.078	83.88	0					33	18	3	0	0	0	0.027462	1	8659	8659		20.947	0	1	435790	+		16005	25449	13016	13037	17895	17895					0.13166301502269562
HIRQHAILN	9	Unmodified	_HIRQHAILN_					0	0	0			REV__ENSG00000186448|ENST00000344387|ZNF197	REV__ENSG00000186448|ENST00000344387|ZNF197	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.3706665039062	2	551.317432	1100.62031	-0.18552	-0.00010228	-1.0534	-0.00058076	-1.2389	-0.00068304	551.3167835982073	30.955	0.49153	30.955	30.632	31.124	0					14	9	2	0	0	0	0.027462	1	1201	1201		12.207	0	1	152120	+		16006	22586	13017	13038	17896	17896					0.07402478414178404
HIRRKRIVG	9	Unmodified	_HIRRKRIVG_					0	0	0		ENSG00000205403|ENST00000394634|CFI	ENSG00000205403|ENST00000394634|CFI	ENSG00000205403|ENST00000394634|CFI	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.8489990234375	2	567.870166	1133.72578	-0.7588	-0.0004309	-2.8171	-0.0015998	-3.5759	-0.0020307	567.8689552443153	72.818	0.33847	69.421	69.253	69.591	-3.3961					10	6	2	0	0	0	0.027462	1	5636	5636		12.207	8.2216	1	20140			16007	9070	13018	13039	17897	17897					0.1642643933043928
HIRVFISG	8	Unmodified	_HIRVFISG_					0	0	0			REV__ENSG00000047617|ENST00000682330|ANO2	REV__ENSG00000047617|ENST00000682330|ANO2	MULTI-MSMS	OvCa99_classI_Rep5	1	464.7733459472656	2	464.771794	927.529036	0.010658	4.9535E-06	-0.3484	-0.00016193	-0.33774	-0.00015697	464.77154826400294	52.883	1.5238	52.883	52.566	54.089	0					98	35	4	0	0	0	0.62934	1	4150	4150		57.811	4.4598	1	10355000	+		16008	16659	13019	13040	17898	17898					0.06237214716873041
HISFIMLDI	9	Unmodified	_HISFIMLDI_					0	0	0		tr|A0A7D6VNV0|A0A7D6VNV0_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_14145PE=4SV=1	tr|A0A7D6VNV0|A0A7D6VNV0_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_14145PE=4SV=1	tr|A0A7D6VNV0|A0A7D6VNV0_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_14145PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.5966796875	2	544.794078	1087.5736	-0.60476	-0.00032947	-3.0581	-0.001666	-3.6628	-0.0019955	544.7920022109	21.685	0.40508	20.346	20.22	20.625	-1.3386					10	7	2	0	0	0	0.027462	1	184	184		20.947	8.7401	1	11263			16009	34730	13020	13041	17899	17899					0.03331857748025868
HISHIAQQV	9	Unmodified	_HISHIAQQV_					0	0	0		ENSG00000123268|ENST00000262053|ATF1	ENSG00000123268|ENST00000262053|ATF1	ENSG00000123268|ENST00000262053|ATF1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.7826538085938	2	516.78289	1031.55123	-1.2134	-0.00062705	0.71719	0.00037063	-0.49618	-0.00025642	516.7832068581977	43.462	0.98365	43.462	43.185	44.169	0					75	22	5	0	0	0	0.012163	2	2885	2862;2885		161.9	82.447	1	2527100			16010	3585	13021	13042	17900;17901	17901					0.03671394394609706
HISHIAQQV	9	Unmodified	_HISHIAQQV_					0	0	0		ENSG00000123268|ENST00000262053|ATF1	ENSG00000123268|ENST00000262053|ATF1	ENSG00000123268|ENST00000262053|ATF1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	516.78289	1031.55123	-0.84727	-0.00043785	-5.8248	-0.0030102	-6.6721	-0.003448	517.2799383874883	46.445	0.20943	43.372	43.189	43.398	-3.0724	-0.045094	-0.006698	NaN	161.9	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10175			16011	3585	13021	13042							0.03671394394609706
HISIEDSRV	9	Unmodified	_HISIEDSRV_					0	0	0		MTSS1L-DGCR8|1|fusion;ENST00000498171.5_1_22:20077477-20097628:+|nuORF;ENST00000495826.5_1_22:20074657-20094820:+|nuORF;MTSS1L-DGCR8|2|fusion;nc|ENSG00000128191|Q8WYQ5-3|DGCR8;ENSG00000128191|ENST00000351989|DGCR8;ENST00000491892.1_1_22:20082246-20094325:+|nuORF	MTSS1L-DGCR8|1|fusion	MTSS1L-DGCR8|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	528.2787475585938	2	528.277638	1054.54072	-0.84285	-0.00044526	0.64543	0.00034097	-0.19742	-0.00010429	528.2777903129592	46.35	1.9317	43.64	43.349	45.281	-2.7097					82	38	3	0	0	0	0.42676	1	2759	2759		49.442	5.3247	1	241450			16012	3866	13022	13043	17902	17902					0.01563366949540068
HISILEGTW	9	Unmodified	_HISILEGTW_					0	0	0		nc|ENSG00000118307|Q6TDU7-2|DNAI7;nc|ENSG00000118307|Q6TDU7-3|DNAI7;nc|ENSG00000118307|Q6TDU7|DNAI7;ENSG00000118307|ENST00000395987|DNAI7;nc|ENSG00000118307|Q6TDU7-4|DNAI7	nc|ENSG00000118307|Q6TDU7-2|DNAI7	nc|ENSG00000118307|Q6TDU7-2|DNAI7	MULTI-MSMS	OvCa99_classI_Rep5	1	528.2774047851562	2	528.279649	1054.54475	-0.69697	-0.00036819	-3.7843	-0.0019991	-4.4812	-0.0023673	528.277653630047	41.572	1.1776	41.572	41.195	42.372	0					78	26	5	0	0	0	0.44294	1	2648	2648		47.916	1.9636	1	10009000			16013	3300	13023	13044	17903	17903					0.0196545644323578
HISIPRAHLRP	11	Unmodified	_HISIPRAHLRP_					0	0	0		ENSG00000197191|ENST00000650725|CYSRT1	ENSG00000197191|ENST00000650725|CYSRT1	ENSG00000197191|ENST00000650725|CYSRT1	MULTI-MSMS	OvCa9_classI_Rep3	3	432.9264221191406	3	432.926434	1295.75747	1.6734	0.00072447	-1.6835	-0.00072885	-0.010124	-4.3828E-06	432.9256048538329	64.918	2.5849	61.925	61.446	64.031	-2.9933					130	50	4	0	0	0	0.72069	1	2539	2539		22.562	0.87584	1	231790			16014	8688	13024	13045	17904	17904					0.12142387293738466
HISLLAIVR	9	Unmodified	_HISLLAIVR_					0	0	0			REV__ENST00000469739.6_1_17:18188617-18210429:-|nuORF	REV__ENST00000469739.6_1_17:18188617-18210429:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.3276672363281	2	511.329476	1020.6444	-4.4323	-0.0022664	-0.073534	-3.76E-05	-4.5058	-0.002304	511.3293417529648	154.42	1.6613	152.97	152.67	154.33	-1.4516					104	42	5	0	0	0	0.59983	2	15265	15265;15286		31.955	7.7521	1	1662600	+		16015	26249	13025	13046	17905;17906	17905					0.13490318847846083
HISNLIKKQ	9	Unmodified	_HISNLIKKQ_					0	0	0			REV__nc|ENSG00000154928|P54762-5|EPHB1	REV__nc|ENSG00000154928|P54762-5|EPHB1	MULTI-MSMS	OvCa99_classI_Rep5	1	540.8330688476562	2	540.82984	1079.64513	2.2839	0.0012352	4.2951	0.0023229	6.5791	0.0035581	540.8319659264882	95.013	1.0532	95.013	94.732	95.785	0					46	24	2	0	0	0	0.42676	1	10358	10358		49.442	8.6634	1	1340400	+		16016	20405	13026	13047	17907	17907					0.10849113496919927
HISNVRYED	9	Unmodified	_HISNVRYED_					0	0	0		nc|ENSG00000168843|Q8N475-3|FSTL5;nc|ENSG00000168843|Q8N475-2|FSTL5;ENSG00000168843|ENST00000306100|FSTL5	nc|ENSG00000168843|Q8N475-3|FSTL5	nc|ENSG00000168843|Q8N475-3|FSTL5	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.326171875	2	566.772719	1131.53089	-0.052632	-2.983E-05	0.01484	8.411E-06	-0.037792	-2.1419E-05	566.7720275662494	50.945	0.38805	50.945	50.819	51.207	0					13	8	2	0	0	0	0.027462	1	3900	3900		29.15	7.1897	1	89098			16017	6947	13027	13048	17908	17908					-0.029618210558510327
HISRDRTKRK	10	Unmodified	_HISRDRTKRK_					0	0	0		ENSG00000157542|ENST00000609713|KCNJ6;chr21:38120408-38121128|140|17.2|0.09|7.5|-|ENST00000645093|KCNJ6,KCNJ6	ENSG00000157542|ENST00000609713|KCNJ6	ENSG00000157542|ENST00000609713|KCNJ6	MULTI-MSMS	OvCa9_classI_Rep3	3	432.92633056640625	3	432.925093	1295.75345	1.6734	0.00072447	1.4138	0.00061206	3.0872	0.0013365	432.9256048538329	64.918	2.5849	61.925	61.446	64.031	-2.9933					130	50	4	0	0	0	0.74773	1	2599	2599		25.126	0	1	231790			16018	460	13028	13049	17909	17909					0.11740297800042754
HISRHRIL	8	Unmodified	_HISRHRIL_					0	0	0			REV__nc|ENSG00000204519|Q7Z340-2|ZNF551	REV__nc|ENSG00000204519|Q7Z340-2|ZNF551	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.3165283203125	2	516.314692	1030.61483	-0.12697	-6.5557E-05	2.3977	0.001238	2.2708	0.0011724	516.3156944800825	116.08	1.1553	114.72	114.3	115.46	-1.3645					52	22	3	0	0	0	0.59148	1	10840	10840		65.803	7.9919	1	146310	+		16019	23164	13029	13050	17910	17910					0.10074799622361752
HISYPLELI	9	Unmodified	_HISYPLELI_					0	0	0			REV__ENSG00000052841|ENST00000039989|TTC17	REV__ENSG00000052841|ENST00000039989|TTC17	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.758544921875	2	542.8055	1083.59645	-0.18349	-9.9598E-05	1.795	0.00097436	1.6115	0.00087476	542.80549884602	69.327	0.85925	69.327	68.939	69.798	0					38	20	3	0	0	0	0.027462	1	6589	6589		31.955	14.59	1	248110	+		16020	16692	13030	13051	17911	17911					0.05799200137153093
HITAFFLLL	9	Unmodified	_HITAFFLLL_					0	0	0		ENST00000518287.6_1_8:71025838-71050550:-|nuORF	ENST00000518287.6_1_8:71025838-71050550:-|nuORF	ENST00000518287.6_1_8:71025838-71050550:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	537.8047485351562	2	537.820953	1073.62735	0.84052	0.00045205	4.3308	0.0023292	5.1714	0.0027813	537.823113334177	73.88	0.79188	71.393	71.175	71.967	-2.4873					27	15	3	0	0	0	0.027433	1	3656	3656		57.811	9.8957	1	54934			16021	13070	13031	13052	17912	17912					0.09348398242059375
HITAFFLLL	9	Unmodified	_HITAFFLLL_					0	0	0		ENST00000518287.6_1_8:71025838-71050550:-|nuORF	ENST00000518287.6_1_8:71025838-71050550:-|nuORF	ENST00000518287.6_1_8:71025838-71050550:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	537.820953	1073.62735	-0.052556	-2.8266E-05	7.5936	0.004084	7.541	0.0040557	537.8234756594542	71.609	0.24138	71.609	71.466	71.707	0	0.13759	0.0022153	NaN	57.811	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140280			16022	13070	13031	13052							0.09348398242059375
HITKGSVN	8	Unmodified	_HITKGSVN_					0	0	0			REV__tr|A0A7D6W3F2|A0A7D6W3F2_9CLOTAlanine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=alaSPE=3SV=1	REV__tr|A0A7D6W3F2|A0A7D6W3F2_9CLOTAlanine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=alaSPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	428.2380065917969	2	428.237784	854.461016	-0.37397	-0.00016015	0.34303	0.0001469	-0.03094	-1.325E-05	428.2378533051604	41.571	0.47766	41.571	41.42	41.897	0					27	10	4	0	0	0	0.59148	1	2612	2612		65.803	17.888	1	528090	+		16023	31914	13032	13053	17913	17913					0.027963450661900424
HITLSHKF	8	Unmodified	_HITLSHKF_					0	0	0			REV__ENST00000483450.1_1_6:28962780-28967471:-|nuORF	REV__ENST00000483450.1_1_6:28962780-28967471:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	491.77783203125	2	491.777077	981.5396	-0.53116	-0.00026121	0.38966	0.00019163	-0.1415	-6.9589E-05	491.77720850845446	54.068	0.6489	54.068	53.815	54.464	0					34	15	3	0	0	0	0.74971	1	4339	4339		26.796	1.3459	1	1225100	+		16024	26526	13033	13054	17914	17914					0.04809197371287155
HITRAFTV	8	Unmodified	_HITRAFTV_					0	0	0		nc|ENSG00000141458|O15118-2|NPC1;ENSG00000141458|ENST00000269228|NPC1;ENST00000587163.1_1_18:21113286-21114508:-|nuORF;ENST00000588867.1_1_18:21114346-21115663:-|nuORF	nc|ENSG00000141458|O15118-2|NPC1	nc|ENSG00000141458|O15118-2|NPC1	MULTI-MSMS	OvCa99_classI_Rep5	1	472.77008056640625	2	472.769252	943.52395	0.31769	0.0001502	-0.2141	-0.00010122	0.10359	4.8975E-05	472.76893237104906	57.625	1.3487	57.625	57.264	58.613	0					87	31	4	0	0	0	0.58851	1	4838	4838		66.429	0.6261	1	4633200			16025	4917	13034	13055	17915	17915					0.04992910854218735
HITVVLLFFGP	11	Unmodified	_HITVVLLFFGP_					0	0	0		nc|ENSG00000186092|Q8NH21|OR4F5;nc|ENSG00000177693|Q96R69|OR4F4;ENSG00000176695|ENST00000585993|OR4F17;ENSG00000177693|ENST00000650172|OR4F4;ENSG00000186092|ENST00000641515|OR4F5	nc|ENSG00000186092|Q8NH21|OR4F5	nc|ENSG00000186092|Q8NH21|OR4F5	MULTI-MSMS	OvCa99_classI_Rep5	1	621.8675537109375	2	621.865892	1241.71723	1.2031	0.00074817	-2.6378	-0.0016404	-1.4347	-0.0008922	621.8642146259473	109.24	2.5626	109.24	108.24	110.8	0					152	57	3	0	0	0	0.40225	1	12392	12392		60.972	0	1	1458000			16026	7623	13035	13056	17916	17916					0.10604027850604325
HIVKVVAKKI	10	Unmodified	_HIVKVVAKKI_					0	0	0		ENST00000453177.2_1_9:22747885-22748107:+|nuORF	ENST00000453177.2_1_9:22747885-22748107:+|nuORF	ENST00000453177.2_1_9:22747885-22748107:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.8479614257812	2	567.889701	1133.76485	0.15313	8.6959E-05	-3.5514	-0.0020168	-3.3982	-0.0019298	567.8856890802232	71.659	0.49254	69.057	68.932	69.424	-2.6023					11	9	2	0	0	0	0.027363	1	3402	3402		16.473	4.2663	1	10422			16027	12067	13036	13057	17917	17917					0.20331726841482123
HIVKVVAKKI	10	Unmodified	_HIVKVVAKKI_					0	0	0		ENST00000453177.2_1_9:22747885-22748107:+|nuORF	ENST00000453177.2_1_9:22747885-22748107:+|nuORF	ENST00000453177.2_1_9:22747885-22748107:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.8483276367188	2	567.889701	1133.76485	-0.75888	-0.00043096	-3.3667	-0.0019119	-4.1256	-0.0023429	567.8875932277932	72.722	0.24165	69.326	69.253	69.495	-3.3961					7	4	2	0	0	0	0.027363	1	5599	5599		16.473	8.2419	1	16582			16028	12067	13036	13057	17918	17918					0.20331726841482123
HIVNRHWSL	9	Unmodified	_HIVNRHWSL_					0	0	0			REV__ENST00000433358.5_1_16:450186-450339:+|nuORF	REV__ENST00000433358.5_1_16:450186-450339:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.8421630859375	2	581.317432	1160.62031	-0.24	-0.00013951	-0.6642	-0.00038611	-0.9042	-0.00052563	581.3166485088686	52.789	0.69244	52.789	52.522	53.214	0					24	15	2	0	0	0	0.027462	1	4178	4178		34.173	2.6427	1	446460	+		16029	25746	13037	13058	17919	17919					0.046424784141890996
HIVSHPVKAI	10	Unmodified	_HIVSHPVKAI_					0	0	0		ENST00000569028.2_1_16:34714672-34714819:-|nuORF	ENST00000569028.2_1_16:34714672-34714819:-|nuORF	ENST00000569028.2_1_16:34714672-34714819:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.7855834960938	2	550.832383	1099.65021	1.8181	0.0010014	-0.12637	-6.961E-05	1.6917	0.00093184	551.3336805979666	133.96	0.47804	133.96	133.67	134.15	0					12	9	2	0	0	0	0.026849	1	15558	15558		25.574	0.12388	1	30222			16030	13880	13038	13059	17920	17920					0.10437417359503343
HIVTAIATVIG	11	Unmodified	_HIVTAIATVIG_					0	0	0			REV__tr|A0A553SJC2|A0A553SJC2_NIACIHotdogfoldthioesteraseOS=NialliacirculansOX=1397GN=CEQ21_16525PE=3SV=1	REV__tr|A0A553SJC2|A0A553SJC2_NIACIHotdogfoldthioesteraseOS=NialliacirculansOX=1397GN=CEQ21_16525PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	547.8253173828125	2	547.832049	1093.64954	-6.0457	-0.003312	-4.2018	-0.0023019	-10.248	-0.0056139	547.8295905768617	154.78	1.79	153.77	152.92	154.71	-1.0076					93	40	3	0	0	0	0.72466	1	13248	13248		19.997	1.7347	1	69775	+		16031	29992	13039	13060	17921	17921					0.10646577919806077
HIVVQNAKL	9	Unmodified	_HIVVQNAKL_					0	0	0			REV__nc|ENSG00000114374|O00507-2|USP9Y	REV__nc|ENSG00000114374|O00507-2|USP9Y	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.31109619140625	2	511.311284	1020.60801	0.54722	0.0002798	-1.2212	-0.00062442	-0.67399	-0.00034462	511.3104786635367	97.49	2.846	95.112	94.467	97.313	-2.3786					116	55	3	0	0	0	0.67509	1	8692	8692		23.042	3.0457	1	411720	+		16032	18184	13040	13061	17922	17922					0.09853441951145214
HIVYLWVVI	9	Unmodified	_HIVYLWVVI_					0	0	0			REV__ENST00000592474.1_1_17:74309820-74309979:-|nuORF	REV__ENST00000592474.1_1_17:74309820-74309979:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.30078125	2	571.342052	1140.66955	-0.25203	-0.00014399	2.4375	0.0013926	2.1855	0.0012486	571.3433862672766	56.474	0.48855	56.474	56.3	56.788	0					20	11	3	0	0	0	0.027462	1	4728	4728		21.702	8.8906	1	625730	+		16033	26317	13041	13062	17923	17923					0.10484373650410816
HIYDIIAL	8	Unmodified	_HIYDIIAL_					0	0	0		tr|A0A7D7A3G6|A0A7D7A3G6_9CLOTtRNA(Ile)-lysidinesynthaseOS=ClostridiumintestinaleOX=36845GN=tilSPE=3SV=1	tr|A0A7D7A3G6|A0A7D7A3G6_9CLOTtRNA(Ile)-lysidinesynthaseOS=ClostridiumintestinaleOX=36845GN=tilSPE=3SV=1	tr|A0A7D7A3G6|A0A7D7A3G6_9CLOTtRNA(Ile)-lysidinesynthaseOS=ClostridiumintestinaleOX=36845GN=tilSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	478.2849426269531	2	479.273835	956.533118	-0.12233	-5.863E-05	-3.9449	-0.0018907	-4.0672	-0.0019493	479.27213881749736	89.881	0.46301	87.801	87.541	88.004	-2.0805					10	8	2	0	0	0	0.028476	1	5537	5537		37.028	11.454	1	9878.9			16034	36115	13042	13063	17924	17924					0.05311259419897851
HIYKPPSISN	10	Unmodified	_HIYKPPSISN_					0	0	0			REV__ENST00000372242.7_1_1:45101583-45102057:-|nuORF	REV__ENST00000372242.7_1_1:45101583-45102057:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	578.3101196289062	2	578.31148	1154.60841	-5.0394	-0.0029143	2.8881	0.0016702	-2.1513	-0.0012441	578.3129890075253	149.06	1.3548	148.11	147.7	149.05	-0.95119					72	26	4	0	0	0	0.6349	1	12601	12601		37.812	11.119	1	213080	+		16035	24998	13043	13064	17925	17925					0.03728816880334307
HIYLAPLALI	10	Unmodified	_HIYLAPLALI_					0	0	0		ENSG00000148734|ENST00000277942|NPFFR1	ENSG00000148734|ENST00000277942|NPFFR1	ENSG00000148734|ENST00000277942|NPFFR1	MULTI-MSMS	OvCa9_classI_Rep3	3	562.34326171875	2	562.347335	1122.68012	-2.9015	-0.0016316	-4.2839	-0.002409	-7.1854	-0.0040407	562.3448419475409	142.33	4.504	141.32	140	144.5	-1.0106					205	90	3	0	0	0	0.79715	1	11973	11973		19.36	1.0356	1	106680			16036	5422	13044	13065	17926	17926					0.12368356304841654
HKAERLSIV	9	Unmodified	_HKAERLSIV_					0	0	0			REV__tr|A0A7D6ZQ78|A0A7D6ZQ78_9CLOTSigma-54-dependentFisfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23295PE=4SV=1	REV__tr|A0A7D6ZQ78|A0A7D6ZQ78_9CLOTSigma-54-dependentFisfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23295PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	526.8147583007812	2	526.81419	1051.61383	1.8584	0.00097906	-0.20912	-0.00011017	1.6493	0.00086889	526.8141558819343	78.545	0.82472	78.545	78.254	79.079	0					43	19	4	0	0	0	0.26076	1	7968	7968		67.494	7.3754	1	847410	+		16037	32145	13045	13066	17927	17927					0.09008540462787096
HKAHLTRR	8	Unmodified	_HKAHLTRR_					0	0	0		ENSG00000166266|ENST00000393094|CUL5	ENSG00000166266|ENST00000393094|CUL5	ENSG00000166266|ENST00000393094|CUL5	MULTI-MSMS	OvCa9_classI_Rep3	3	509.8028869628906	2	509.804491	1017.59443	-1.31	-0.00066782	-0.28738	-0.00014651	-1.5973	-0.00081433	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.75241	1	11159	11159		25.45	2.4077	1	99460			16038	6658	13046	13067	17928	17928					0.08633628962536477
HKAVSWLL	8	Unmodified	_HKAVSWLL_					0	0	0			REV__ENST00000502682.1_1_4:41145057-41218531:-|nuORF	REV__ENST00000502682.1_1_4:41145057-41218531:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.24188232421875	2	477.281995	952.549437	-0.2737	-0.00013063	-3.8649	-0.0018447	-4.1386	-0.0019753	477.27991359020666	54.185	1.3263	54.185	53.609	54.935	0					59	31	3	0	0	0	0.028476	1	4411	4411		38.806	0	1	2143200	+		16039	24196	13047	13068	17929	17929					0.07126385376659528
HKEKRLKISL	10	Unmodified	_HKEKRLKISL_					0	0	0			REV__ENST00000462566.1_1_21:34953586-34954315:-|nuORF	REV__ENST00000462566.1_1_21:34953586-34954315:-|nuORF	MSMS	OvCa9_classI_Rep3	3	626.3934326171875	2	626.398422	1250.78229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	164.62	1	163.21	162.71	163.71	-1.4083								0	0	0	0.14222	1	14362	14362		20.947	2.6848	1		+		16040	20599	13048	13069	17930	17930					0.16693022376466615
HKELTANPKV	10	Unmodified	_HKELTANPKV_					0	0	0			REV__ENST00000558501.5_1_19:8275630-8321979:+|nuORF	REV__ENST00000558501.5_1_19:8275630-8321979:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	568.8253173828125	2	568.824755	1135.63496	0.50849	0.00028924	2.7921	0.0015882	3.3006	0.0018775	568.8261808138619	127.14	1.0877	126.9	126.64	127.73	-0.2359					54	21	4	0	0	0	0.6349	1	12433	12433		37.812	2.6595	1	176260	+		16041	17230	13049	13070	17931	17931					0.07256505771624688
HKEPGHLYV	9	Unmodified	_HKEPGHLYV_					0	0	0		nc|ENSG00000007171|P35228-2|NOS2;ENSG00000007171|ENST00000313735|NOS2	nc|ENSG00000007171|P35228-2|NOS2	nc|ENSG00000007171|P35228-2|NOS2	MULTI-MSMS	OvCa9_classI_Rep2	2	540.2841796875	2	540.285266	1078.55598	0.71701	0.00038739	-2.4441	-0.0013205	-1.7271	-0.00093313	540.2838474213934	90.927	1.6026	89.692	89.143	90.746	-1.2355					68	30	3	0	0	0	0.22961	1	8052	8052		71.296	7.0884	1	527920			16042	895	13050	13071	17932	17932					0.019842785373839433
HKFKLLMD	8	Unmodified	_HKFKLLMD_					0	0	0			REV__ENSG00000197653|ENST00000673944|DNAH10	REV__ENSG00000197653|ENST00000673944|DNAH10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7594604492188	2	516.288963	1030.56337	-1.2383	-0.00063931	-1.7755	-0.00091666	-3.0138	-0.001556	516.7882765786599	42.607	0.78151	39.627	39.361	40.142	-2.9804					22	14	2	0	0	0	0.028476	1	1961	1961		31.955	0	1	43232	+		16043	22941	13051	13072	17933	17933					0.04931294813468412
HKGAIQVD	8	Unmodified	_HKGAIQVD_					0	0	0			REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|207|3|sense	REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|207|3|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	434.2380676269531	2	434.237784	866.461016	0.74445	0.00032327	-0.64865	-0.00028167	0.095803	4.1601E-05	434.2373721939325	38.735	1.3391	35.808	35.552	36.891	-2.9264					65	26	3	0	0	0	0.71369	1	1565	1565		40.573	3.4135	1	306890	+		16044	28496	13052	13073	17934	17934					0.02244345066196729
HKGRKPGSRE	10	Unmodified	_HKGRKPGSRE_					0	0	0			REV__nc|ENSG00000171483|Q7RTT6|SSX6P	REV__nc|ENSG00000171483|Q7RTT6|SSX6P	MULTI-MSMS	OvCa99_classI_Rep5	1	576.325439453125	2	576.323245	1150.63194	-0.60241	-0.00034718	3.8917	0.0022429	3.2893	0.0018957	576.3253601239769	41.256	1.013	41.256	40.711	41.724	0					51	22	4	0	0	0	0.44431	1	2556	2556		62.107	1.1355	1	1189200	+		16045	29005	13053	13074	17935	17935					0.06264675437523692
HKGRKPGSRE	10	Unmodified	_HKGRKPGSRE_					0	0	0			REV__nc|ENSG00000171483|Q7RTT6|SSX6P	REV__nc|ENSG00000171483|Q7RTT6|SSX6P	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	576.323245	1150.63194	-0.60241	-0.00034718	3.8917	0.0022429	3.2893	0.0018957	576.3253601239769	41.256	1.013	41.256	40.711	41.724	0	0	0	NaN	62.107	51	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1189200	+		16046	29005	13053	13074							0.06264675437523692
HKHNETSQK	9	Unmodified	_HKHNETSQK_					0	0	0		ENSG00000130363|ENST00000367069|RSPH3;nc|ENSG00000130363|Q86UC2-2|RSPH3;nc|ENSG00000130363|Q86UC2|RSPH3	ENSG00000130363|ENST00000367069|RSPH3	ENSG00000130363|ENST00000367069|RSPH3	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.2968139648438	2	554.778336	1107.54212	2.3212	0.0012878	-2.5747	-0.0014284	-0.25349	-0.00014063	554.7778553775181	82.501	0.12761	82.501	82.394	82.522	0					4	2	2	0	0	0	0.027462	1	8543	8543		24.519	3.5723	1	112350			16047	3982	13054	13075	17936	17936					-0.00734998961729616
HKIAPEEL	8	Unmodified	_HKIAPEEL_					0	0	0		chr1:155709824-155731356|283|12.22|0.43|4.84|+|0|DAP3,DAP3|1	chr1:155709824-155731356|283|12.22|0.43|4.84|+|0|DAP3,DAP3|1	chr1:155709824-155731356|283|12.22|0.43|4.84|+|0|DAP3,DAP3|1	MULTI-MSMS	OvCa9_classI_Rep2	2	468.7607116699219	2	468.761092	935.507631	-0.81986	-0.00038432	0.84758	0.00039731	0.02772	1.2994E-05	468.7613295346182	56.798	1.338	53.994	53.523	54.861	-2.804					60	26	4	0	0	0	0.67745	1	4038	4038		47.916	3.7988	1	195110			16048	244	13055	13076	17937	17937					0.03729784897461741
HKIGKEPVL	9	Unmodified	_HKIGKEPVL_					0	0	0		tr|A0A553STI6|A0A553STI6_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_04950PE=3SV=1	tr|A0A553STI6|A0A553STI6_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_04950PE=3SV=1	tr|A0A553STI6|A0A553STI6_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_04950PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	510.8134765625	2	510.813659	1019.61277	0.66577	0.00034009	-0.99665	-0.0005091	-0.33088	-0.00016902	510.81303107097773	129.05	1.0381	127.95	127.51	128.55	-1.1018					49	20	3	0	0	0	0.59259	1	10206	10206		32.812	6.1195	1	128600			16049	34492	13056	13077	17938	17938					0.10374326093892705
HKISFSVLD	9	Unmodified	_HKISFSVLD_					0	0	0		ENSG00000229544|ENST00000451024|NKX1-2	ENSG00000229544|ENST00000451024|NKX1-2	ENSG00000229544|ENST00000451024|NKX1-2	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8046875	2	523.287474	1044.5604	1.4029	0.00073414	2.4969	0.0013066	3.8999	0.0020408	523.7904135430517	92.127	0.42252	92.127	91.92	92.343	0					19	9	3	0	0	0	0.027462	1	9930	9930		39.253	0	1	938080			16050	9282	13057	13078	17939	17939					0.03989742960266085
HKIVDAIGAI	10	Unmodified	_HKIVDAIGAI_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	MULTI-MSMS	OvCa9_classI_Rep2	2	518.8057861328125	2	518.811116	1035.60768	1.8637	0.00096692	-2.8661	-0.001487	-1.0023	-0.00052003	518.8096777874774	87.789	3.0579	86.358	85.791	88.849	-1.4311					163	61	6	0	0	0	0.66721	1	7746	7746		34.173	0.65696	1	5567100			16051	1687	13058	13079	17940	17940					0.09130022231261137
HKIWQSRAAF	10	Unmodified	_HKIWQSRAAF_					0	0	0			REV__LRCH1|p.E457Vfs*53|1|0.03|ENSG00000136141|chr13:46701176-46701177|-/T|frameshift_variant	REV__LRCH1|p.E457Vfs*53|1|0.03|ENSG00000136141|chr13:46701176-46701177|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	622.3372802734375	2	622.338364	1242.66217	-4.3656	-0.0027169	1.3939	0.00086749	-2.9717	-0.0018494	622.3390875012716	154.54	0.85817	153.09	152.8	153.66	-1.4516					54	19	3	0	0	0	0.74374	1	15295	15295		25.574	2.0514	1	149970	+		16052	28626	13059	13080	17941	17941					0.050550341027019385
HKKKHVIFAS	10	Unmodified	_HKKKHVIFAS_					0	0	0			REV__ENSG00000185219|ENST00000396077|ZNF445	REV__ENSG00000185219|ENST00000396077|ZNF445	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8557739257812	2	597.858932	1193.70331	-3.1766	-0.0018991	-1.0809	-0.0006462	-4.2574	-0.0025453	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.73378	1	15080	15080		26.693	3.1702	1	436470	+		16053	22486	13060	13081	17942	17942					0.11420795142180395
HKKKHVIFAS	10	Unmodified	_HKKKHVIFAS_					0	0	0			REV__ENSG00000185219|ENST00000396077|ZNF445	REV__ENSG00000185219|ENST00000396077|ZNF445	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8557739257812	2	597.858932	1193.70331	-1.9041	-0.0011384	-2.5033	-0.0014966	-4.4074	-0.002635	597.8573316932594	144.83	3.9651	143.86	141.71	145.68	-0.97301					192	79	4	0	0	0	0.7759	1	12147	12147		21.96	1.9631	1	187110	+		16054	22486	13060	13081	17943	17943					0.11420795142180395
HKKKHVIFAS	10	Unmodified	_HKKKHVIFAS_					0	0	0			REV__ENSG00000185219|ENST00000396077|ZNF445	REV__ENSG00000185219|ENST00000396077|ZNF445	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8562622070312	2	597.858932	1193.70331	-2.7036	-0.0016164	-1.6559	-0.00099001	-4.3595	-0.0026064	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.78463	1	12783	12783		20.947	3.582	1	591030	+		16055	22486	13060	13081	17944	17944					0.11420795142180395
HKKKKTRTSPA	11	Unmodified	_HKKKKTRTSPA_					0	0	0		ENST00000498752.1_1_11:43740306-43740693:+|nuORF	ENST00000498752.1_1_11:43740306-43740693:+|nuORF	ENST00000498752.1_1_11:43740306-43740693:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	427.9296875	3	427.929844	1280.7677	1.7119	0.00073257	-1.7813	-0.00076226	-0.069373	-2.9687E-05	427.9290217090034	65.493	1.4717	62.547	62.198	63.67	-2.9459					92	28	4	0	0	0	0.72473	1	2671	2671		12.433	0	1	349590			16056	12833	13061	13082	17945	17945					0.13854950228346752
HKKQGIAPFFI	11	Unmodified	_HKKQGIAPFFI_					0	0	0			REV__nc|ENSG00000163291|Q6TCH7-4|PAQR3	REV__nc|ENSG00000163291|Q6TCH7-4|PAQR3	MULTI-MSMS	OvCa9_classI_Rep4_	4	429.2516784667969	3	429.252036	1284.73428	-0.16477	-7.0726E-05	-3.5312	-0.0015158	-3.696	-0.0015865	429.25055952438805	92.339	1.6895	89.796	89.415	91.104	-2.5425					123	33	5	0	0	0	0.66495	1	8004	8004		38.754	0	1	2879600	+		16057	28965	13062	13083	17946	17946					0.1032994845641042
HKKQLIII	8	Unmodified	_HKKQLIII_					0	0	0			REV__ENST00000409368.5_1_2:203072697-203075483:-|nuORF	REV__ENST00000409368.5_1_2:203072697-203075483:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	496.2716979980469	2	496.834394	991.654236	0.41627	0.00020682	-0.75623	-0.00037572	-0.33996	-0.0001689	496.8338471090274	71.844	1.0967	69.337	69.068	70.165	-2.5071					49	20	3	0	0	0	0.028476	1	5837	5837		18.324	0.95945	1	216390	+		16058	25466	13063	13084	17947	17947					0.15807506853229825
HKKRLLEH	8	Unmodified	_HKKRLLEH_					0	0	0		nc|ENSG00000121406|Q6P9A3-2|ZNF549;ENSG00000121406|ENST00000376233|ZNF549	nc|ENSG00000121406|Q6P9A3-2|ZNF549	nc|ENSG00000121406|Q6P9A3-2|ZNF549	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.7857055664062	2	530.82235	1059.63015	-0.32797	-0.00017409	-0.045484	-2.4144E-05	-0.37345	-0.00019824	530.8218199322685	29.709	0.44934	29.709	29.486	29.935	0					11	8	2	0	0	0	0.028476	1	1093	1093		18.324	5.3652	1	16515			16059	3482	13064	13085	17948	17948					0.10271666419566827
HKKRLLVV	8	Unmodified	_HKKRLLVV_					0	0	0		ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.2711181640625	2	496.840011	991.665469	-0.29088	-0.00014452	0.037755	1.8758E-05	-0.25312	-0.00012576	496.83989533333516	35.59	0.32323	35.59	35.429	35.753	0					11	6	2	0	0	0	0.028476	1	1816	1816		33.516	20.556	1	58157			16060	1419	13065	13086	17949	17949					0.16930328947375983
HKKSEAVR	8	Unmodified	_HKKSEAVR_					0	0	0		CACNA2D3-DAP3|1|fusion;nc|ENSG00000157445|Q8IZS8-3|CACNA2D3;CACNA2D3-TEX264|1|fusion;nc|ENSG00000157445|Q8IZS8-2|CACNA2D3;ENSG00000157445|ENST00000474759|CACNA2D3	CACNA2D3-DAP3|1|fusion	CACNA2D3-DAP3|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	477.77734375	2	477.777608	953.540663	-0.41277	-0.00019721	0.25785	0.0001232	-0.15491	-7.4013E-05	477.7775743320388	24.813	0.25136	24.813	24.687	24.938	0					6	4	2	0	0	0	0.67745	1	500	500		47.916	3.7988	1	40291			16061	174	13066	13087	17950	17950					0.062034117401822186
HKLAERSL	8	Unmodified	_HKLAERSL_					0	0	0			REV__CPT1B|p.M204Wfs*31|1|0.21|ENSG00000205560|chr22:50576288-50576288|G/-|frameshift_variant	REV__CPT1B|p.M204Wfs*31|1|0.21|ENSG00000205560|chr22:50576288-50576288|G/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	477.28131103515625	2	477.279983	952.545414	-0.2737	-0.00013063	0.34928	0.00016671	0.075586	3.6076E-05	477.27991359020666	54.185	1.3263	54.185	53.609	54.935	0					59	31	3	0	0	0	0.53252	1	4346	4346		74.255	2.3776	1	2143200	+		16062	16235	13067	13088	17951	17951					0.06724295882941078
HKLAFSKF	8	Unmodified	_HKLAFSKF_					0	0	0			REV__ENST00000562299.1_1_16:55612978-55617007:+|nuORF	REV__ENST00000562299.1_1_16:55612978-55617007:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	489.2807312011719	2	489.281995	976.549437	-0.84122	-0.00041159	-3.5805	-0.0017519	-4.4217	-0.0021634	489.28011614418386	59.284	0.86842	59.284	59.011	59.879	0					72	22	4	0	0	0	0.56195	1	5135	5135		71.296	13.484	1	10996000	+		16063	17160	13068	13089	17952	17952					0.06022385376661532
HKLEGRDIVP	10	Unmodified	_HKLEGRDIVP_					0	0	0		ENSG00000101842|ENST00000217957|VSIG1;nc|ENSG00000101842|Q86XK7-2|VSIG1	ENSG00000101842|ENST00000217957|VSIG1	ENSG00000101842|ENST00000217957|VSIG1	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.773193359375	2	582.330205	1162.64586	2.3795	0.0013857	1.4607	0.00085062	3.8403	0.0022363	582.3315599861266	86.549	0.24792	86.549	86.389	86.637	0					6	5	2	0	0	0	0.026752	1	9119	9119		27.882	0	1	198460			16064	2202	13069	13090	17953	17953					0.07103908145927562
HKLIYVRPN	9	Unmodified	_HKLIYVRPN_					0	0	0		nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6;ENST00000481908.5_1_X:134654863-134703297:+|nuORF;nc|ENSG00000165359|Q5JSJ4|INTS6L;ENSG00000165359|ENST00000639893|INTS6L	nc|ENSG00000102786|Q9UL03-3|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.7632446289062	2	570.337833	1138.66111	-0.56523	-0.00032237	0.0072805	4.1523E-06	-0.55795	-0.00031822	570.337837801265	41.555	0.61399	41.555	41.195	41.809	0					32	13	3	0	0	0	0.027462	1	2621	2621		24.203	5.9407	1	215620			16065	2253	13070	13091	17954	17954					0.09732819733812903
HKLLWRLKVYF	11	Unmodified	_HKLLWRLKVYF_					0	0	0			REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1	REV__nc|ENSG00000168502|Q9Y4B5-2|MTCL1	MULTI-MSMS	OvCa9_classI_Rep2	2	501.63299560546875	3	501.638001	1501.89217	-5.5139	-0.002766	-2.3131	-0.0011604	-7.8271	-0.0039263	501.63686894791874	162.29	1.9089	162.06	160.59	162.5	-0.22696					90	37	3	0	0	0	0.72568	1	16532	16532		6.6596	0.65857	1	106580	+		16066	21383	13071	13092	17955	17955					0.16130447715613627
HKLNKRNG	8	Unmodified	_HKLNKRNG_					0	0	0			REV__nc|ENSG00000041988|Q8WTV1-4|THAP3;REV__nc|ENSG00000041988|Q8WTV1-3|THAP3	REV__nc|ENSG00000041988|Q8WTV1-3|THAP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.74859619140625	2	483.783225	965.551896	-0.72799	-0.00035219	0.75947	0.00036742	0.031486	1.5232E-05	483.7832752034598	28.514	0.24829	28.514	28.39	28.638	0					6	4	2	0	0	0	0.028476	1	931	931		1.3276	0	1	16099	+		16067	16635;28711	13072	13093	17956	17956					0.06774233834312327
HKLRELAS	8	Unmodified	_HKLRELAS_					0	0	0			REV__ENST00000413059.1_1_X:57419910-57420861:-|nuORF;REV__MTHFD1-CASK|2|fusion	REV__MTHFD1-CASK|2|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	477.2806701660156	2	477.279983	952.545414	-0.2737	-0.00013063	0.34928	0.00016671	0.075586	3.6076E-05	477.27991359020666	54.185	1.3263	54.185	53.609	54.935	0					59	31	3	0	0	0	0.56195	1	4375	4375		71.296	2.5089	1	2143200	+		16068	28684;25503	13073	13094	17957	17957					0.0672429588292971
HKMTVQQPK	9	Unmodified	_HKMTVQQPK_					0	0	0		ENST00000433059.1_2_19:36282594-36282750:-|nuORF	ENST00000433059.1_2_19:36282594-36282750:-|nuORF	ENST00000433059.1_2_19:36282594-36282750:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.2844848632812	2	548.800226	1095.5859	-1.9635	-0.0010776	-1.7942	-0.00098467	-3.7577	-0.0020622	549.3014782237561	49.236	0.31558	46.094	45.832	46.147	-3.1416					8	5	2	0	0	0	0.027462	1	2741	2741		27.882	0	1	20963			16069	11822	13074	13095	17958	17958					0.04192894211064413
HKNKILKS	8	Unmodified	_HKNKILKS_					0	0	0		nc|ENSG00000187984|Q9H560|ANKRD19P;ENST00000473204.5_1_9:95571946-95584543:+|nuORF	nc|ENSG00000187984|Q9H560|ANKRD19P	nc|ENSG00000187984|Q9H560|ANKRD19P	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.2288513183594	2	484.306001	966.597449	-0.35948	-0.0001741	0.40047	0.00019395	0.040996	1.9855E-05	484.30581707729607	50.946	0.39249	50.946	50.685	51.078	0					13	8	2	0	0	0	0.028476	1	3881	3881		35.618	0	1	93298			16070	12406	13075	13096	17959	17959					0.11281459296719731
HKPLKRRN	8	Unmodified	_HKPLKRRN_					0	0	0			REV__EXT1|p.R83Pfs*106|1|0.17|ENSG00000182197|chr8:118110799-118110800|-/G|frameshift_variant	REV__EXT1|p.R83Pfs*106|1|0.17|ENSG00000182197|chr8:118110799-118110800|-/G|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	524.8277587890625	2	524.827966	1047.64138	0.16407	8.6107E-05	-1.422	-0.00074628	-1.2579	-0.00066017	524.8271106271505	161.44	1.2185	161.44	161.06	162.28	0					81	23	5	0	0	0	0.74971	1	18975	18975		26.796	0	1	1526900	+		16071	28122	13076	13097	17960	17960					0.1194648851369493
HKPLTEPSSGP	11	Unmodified	_HKPLTEPSSGP_					0	0	0			REV__ENSG00000055813|ENST00000407595|CCDC85A	REV__ENSG00000055813|ENST00000407595|CCDC85A	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.2980346679688	2	575.29857	1148.58259	-1.4964	-0.00086089	-0.38554	-0.0002218	-1.882	-0.0010827	575.2982824131199	71.894	0.82426	68.437	68.174	68.998	-3.4563					54	16	5	0	0	0	0.65063	1	5512	5512		40.058	4.9061	1	943580	+		16072	15751	13077	13098	17961	17961					0.014239226380595937
HKPLTEPSSGP	11	Unmodified	_HKPLTEPSSGP_					0	0	0			REV__ENSG00000055813|ENST00000407595|CCDC85A	REV__ENSG00000055813|ENST00000407595|CCDC85A	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	575.29857	1148.58259	-0.57956	-0.00033342	-0.95865	-0.00055151	-1.5382	-0.00088493	575.2979235700235	68.502	0.82967	68.502	68.233	69.063	0	0.057283	-0.00011525	NaN	40.058	58	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7908700	+		16073	15751	13077	13098							0.014239226380595937
HKPLTEPSSGP	11	Unmodified	_HKPLTEPSSGP_					0	0	0			REV__ENSG00000055813|ENST00000407595|CCDC85A	REV__ENSG00000055813|ENST00000407595|CCDC85A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	575.29857	1148.58259	-0.32045	-0.00018435	-1.1947	-0.0006873	-1.5151	-0.00087165	575.2978122281315	70.965	0.77586	68.394	67.965	68.741	-2.5707	-0.050052	-0.00038683	NaN	40.058	44	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246760	+		16074	15751	13077	13098							0.014239226380595937
HKQEQLKLFCE	11	Unmodified	_HKQEQLKLFCE_					0	0	0		nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33	nc|ENSG00000197323|Q9UPN9-2|TRIM33	nc|ENSG00000197323|Q9UPN9-2|TRIM33	MULTI-SECPEP	OvCa99_classI_Rep5	1	469.2308349609375	3	468.2431	1401.70747	-0.30203	-0.00014143	-3.0285	-0.0014181	-3.3305	-0.0015595	468.5768039445483	55.869	0.24718	55.869	55.764	56.011	0					7	5	2	0	0	0	0.026345	1	4591	4591		15.921	6.7089	1	92117			16075	8701	13078	13099	17962	17962					0.022684717829179135
HKQGIETLA	9	Unmodified	_HKQGIETLA_					0	0	0			REV__nc|ENSG00000125434|Q3KQZ1-3|SLC25A35	REV__nc|ENSG00000125434|Q3KQZ1-3|SLC25A35	MULTI-MSMS	OvCa99_classI_Rep5	1	498.7768249511719	2	498.777274	995.539994	-0.78348	-0.00039078	0.86995	0.00043391	0.086473	4.3131E-05	498.7774887339741	42.295	0.47189	42.295	42.024	42.496	0					20	10	2	0	0	0	0.40667	1	2708	2708		51.335	1.8939	1	521110	+		16076	18723	13079	13100	17963	17963					0.04204572300477594
HKQKKWIIAS	10	Unmodified	_HKQKKWIIAS_					0	0	0			REV__ENST00000466893.5_1_3:62262350-62302793:-|nuORF	REV__ENST00000466893.5_1_3:62262350-62302793:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8690795898438	2	619.87204	1237.72953	-3.1194	-0.0019336	-1.2014	-0.00074472	-4.3208	-0.0026783	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.7759	1	14782	14782		21.96	1.013	1	806750	+		16077	26190	13080	13101	17964	17964					0.12017064313681658
HKRARAVRA	9	Unmodified	_HKRARAVRA_					0	0	0		ENST00000551964.5_2_12:99038968-99039502:+|nuORF	ENST00000551964.5_2_12:99038968-99039502:+|nuORF	ENST00000551964.5_2_12:99038968-99039502:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.7713623046875	2	532.83104	1063.64753	-0.99038	-0.0005277	3.3613	0.001791	2.3709	0.0012633	532.8327056160476	27.662	0.40018	27.662	27.491	27.891	0					16	7	3	0	0	0	0.027462	1	833	833		23.042	2.0956	1	145720			16078	13607	13081	13102	17965	17965					0.1182500674522089
HKRDRLVINGV	11	Unmodified	_HKRDRLVINGV_					0	0	0			REV__tr|A0A7D6VWW2|A0A7D6VWW2_9CLOTRibonucleaseJOS=ClostridiumintestinaleOX=36845GN=rnjPE=3SV=1	REV__tr|A0A7D6VWW2|A0A7D6VWW2_9CLOTRibonucleaseJOS=ClostridiumintestinaleOX=36845GN=rnjPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	436.26055908203125	3	436.261594	1305.76295	0.012007	5.2382E-06	-0.41967	-0.00018309	-0.40767	-0.00017785	436.2615773396781	64.106	2.7222	61.381	60.915	63.637	-2.7245					177	52	5	0	0	0	0.65267	2	4857	4857;4887		39.873	5.7867	1	5858100	+		16079	31756	13082	13103	17966;17967	17966					0.12230066085544422
HKRDRLVINGV	11	Unmodified	_HKRDRLVINGV_					0	0	0			REV__tr|A0A7D6VWW2|A0A7D6VWW2_9CLOTRibonucleaseJOS=ClostridiumintestinaleOX=36845GN=rnjPE=3SV=1	REV__tr|A0A7D6VWW2|A0A7D6VWW2_9CLOTRibonucleaseJOS=ClostridiumintestinaleOX=36845GN=rnjPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	436.2610778808594	3	436.261594	1305.76295	1.694	0.00073904	-2.0677	-0.00090204	-0.37362	-0.00016299	436.26077678089143	64.483	2.8395	61.49	61.14	63.98	-2.9933					174	55	5	0	0	0	0.70315	1	2480	2480		28.577	3.4507	1	3808000	+		16080	31756	13082	13103	17968	17968					0.12230066085544422
HKRFHITE	8	Unmodified	_HKRFHITE_					0	0	0		ENSG00000197020|ENST00000358296|ZNF100	ENSG00000197020|ENST00000358296|ZNF100	ENSG00000197020|ENST00000358296|ZNF100	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.8026733398438	2	534.290882	1066.56721	-0.66578	-0.00035572	4.3928	0.002347	3.727	0.0019913	534.7932392999539	65.518	0.56036	65.518	65.271	65.831	0					23	13	2	0	0	0	0.028476	1	6065	6065		35.618	12.576	1	716450			16081	8671	13083	13104	17969	17969					0.03659100631534784
HKRKRKSLQNR	11	Unmodified	_HKRKRKSLQNR_					0	0	0		ENSG00000152217|ENST00000649279|SETBP1	ENSG00000152217|ENST00000649279|SETBP1	ENSG00000152217|ENST00000649279|SETBP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	484.773681640625	3	484.299042	1449.8753	0.49186	0.00023821	2.5698	0.0012445	3.0616	0.0014827	484.30008159337314	92.376	0.99816	91.208	90.604	91.603	-1.168					25	18	3	0	0	0	0.026383	1	8147	8147		12.957	3.7457	1	22623			16082	5611	13084	13105	17970	17970					0.1683533988241379
HKRRLERERRK	11	Unmodified	_HKRRLERERRK_					0	0	0			REV__ENST00000578653.1_1_17:27849339-27857712:+|nuORF	REV__ENST00000578653.1_1_17:27849339-27857712:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	522.3184204101562	3	521.985346	1562.93421	-4.6275	-0.0024155	4.3951	0.0022942	-0.23242	-0.00012132	521.9874825988561	161.37	1.9376	161.15	159.95	161.88	-0.22696					86	38	3	0	0	0	0.72582	1	16445	16445		3.026	1.6072	1	39687	+		16083	20664	13085	13106	17971	17971					0.17525816176703302
HKRRPPAMS	9	Unmodified	_HKRRPPAMS_					0	0	0			REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-MSMS	OvCa9_classI_Rep2	2	540.2985229492188	2	540.298185	1078.58182	-1.8908	-0.0010216	1.5096	0.00081564	-0.38116	-0.00020594	540.2989536670705	38.535	2.9688	35.825	35.469	38.438	-2.7097					158	59	5	0	0	0	0.42676	2	1798	1798;1833		49.442	3.1263	1	1380400	+		16084	18468	13086	13107	17972;17973	17972					0.04566849508000814
HKRRPPAMS	9	Unmodified	_HKRRPPAMS_					0	0	0			REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	REV__nc|ENSG00000119778|Q9ULI0-2|ATAD2B	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.2988891601562	2	540.298185	1078.58182	-0.33982	-0.0001836	-0.64748	-0.00034983	-0.9873	-0.00053343	540.2979670747679	38.277	3.0652	35.351	34.907	37.972	-2.9264					190	60	5	0	0	0	0.33652	1	1465	1465		58.782	7.4465	1	3652900	+		16085	18468	13086	13107	17974	17974					0.04566849508000814
HKRRRETP	8	Unmodified	_HKRRRETP_					0	0	0		nc|ENSG00000167978|Q9UQ35-2|SRRM2;ENSG00000167978|ENST00000301740|SRRM2	nc|ENSG00000167978|Q9UQ35-2|SRRM2	nc|ENSG00000167978|Q9UQ35-2|SRRM2	MULTI-SECPEP	OvCa9_classI_Rep2	2	540.2985229492188	2	540.312681	1078.61081	-2.1465	-0.0011598	0.60904	0.00032907	-1.5374	-0.0008307	540.3134392317937	38.43	0.24738	35.721	35.519	35.766	-2.7097					6	4	2	0	0	0	0.028476	1	1798	1798		26.693	0	1	9414			16086	6856	13087	13108	17975	17975					0.07464710128647312
HKSKNREIVE	10	Unmodified	_HKSKNREIVE_					0	0	0		tr|A0A553SQL8|A0A553SQL8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07910PE=4SV=1	tr|A0A553SQL8|A0A553SQL8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07910PE=4SV=1	tr|A0A553SQL8|A0A553SQL8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07910PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.90350341796875	3	413.898321	1238.67313	0.32146	0.00013305	3.0889	0.0012785	3.4104	0.0014116	413.8994993451993	68.4	0.70651	68.4	68.152	68.858	0					46	16	5	0	0	0	0.026942	1	6458	6458		26.063	6.8007	1	1887900			16087	34174	13088	13109	17976	17976					0.06334391686323215
HKSSSSFTP	9	Unmodified	_HKSSSSFTP_					0	0	0		nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4	nc|ENSG00000071054|O95819-4|MAP4K4	nc|ENSG00000071054|O95819-4|MAP4K4	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.2800598144531	2	489.237981	976.461409	-0.63129	-0.00030885	0.58636	0.00028687	-0.044936	-2.1984E-05	489.2382330300016	59.038	0.37649	59.038	58.852	59.228	0					14	9	2	0	0	0	0.027433	1	5077	5077		60.972	28.16	1	427020			16088	1444	13089	13110	17977	17977					-0.02776280004604814
HKSSTILRLR	10	Unmodified	_HKSSTILRLR_					0	0	0			REV__nc|ENSG00000107789|Q9UNW1-3|MINPP1	REV__nc|ENSG00000107789|Q9UNW1-3|MINPP1	MULTI-MSMS	OvCa9_classI_Rep2	2	605.871826171875	2	605.872571	1209.73059	-4.9831	-0.0030191	3.9659	0.0024028	-1.0172	-0.00061628	605.874829866227	157.02	0.88571	156.79	156.54	157.42	-0.22696					68	24	4	0	0	0	0.79213	1	15974	15974		19.997	0.89325	1	101120	+		16089	17857	13090	13111	17978	17978					0.13411278682542616
HKSVQSLASL	10	Unmodified	_HKSVQSLASL_					0	0	0			REV__nc|ENSG00000077327|O75602-2|SPAG6	REV__nc|ENSG00000077327|O75602-2|SPAG6	MULTI-MSMS	OvCa9_classI_Rep2	2	535.3058471679688	2	535.303655	1068.59276	-0.78369	-0.00041951	2.9112	0.0015584	2.1275	0.0011389	535.3053210822743	109.88	1.1377	109.71	109.41	110.55	-0.17237					58	22	3	0	0	0	0.62712	1	10327	10327		38.754	4.832	1	92569	+		16090	17010	13091	13112	17979	17979					0.061205303632732466
HKTLLDGILL	10	Unmodified	_HKTLLDGILL_					0	0	0		ENST00000486463.5_1_2:96687909-96693504:-|nuORF;nc|ENSG00000186281|Q6NUI2|GPAT2;ENSG00000186281|ENST00000434632|GPAT2;ENST00000484440.5_1_2:96688852-96698107:-|nuORF;nc|ENSG00000186281|Q6NUI2-3|GPAT2;ENST00000482704.1_1_2:96692637-96693504:-|nuORF;ENST00000471757.5_1_2:96691131-96693504:-|nuORF	ENST00000486463.5_1_2:96687909-96693504:-|nuORF	ENST00000486463.5_1_2:96687909-96693504:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	561.8467407226562	2	561.847699	1121.68084	1.4749	0.00082867	-3.2225	-0.0018106	-1.7476	-0.00098188	561.845750192742	157.32	1.5158	157.32	156.95	158.46	0					97	30	5	0	0	0	0.7759	1	18508	18508		21.96	2.5999	1	1429200			16091	8327	13092	13113	17980	17980					0.12487150953893433
HKVCMSLSY	9	Unmodified	_HKVCMSLSY_					0	0	0			REV__ENST00000314970.10_1_4:185580560-185587128:+|nuORF	REV__ENST00000314970.10_1_4:185580560-185587128:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.2952270507812	2	534.254262	1066.49397	-0.77123	-0.00041203	3.8031	0.0020318	3.0319	0.0016198	534.2562399540296	26.351	1.0505	26.351	25.992	27.043	0					36	20	2	0	0	0	0.027462	1	686	686		23.042	0	1	58629	+		16092	24390	13093	13114	17981	17981					-0.0366153219761145
HKVELKAALA	10	Unmodified	_HKVELKAALA_					0	0	0			REV__ENSG00000197745|ENST00000358585|SCGB1D4	REV__ENSG00000197745|ENST00000358585|SCGB1D4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.2982788085938	2	540.332216	1078.64988	-0.35719	-0.000193	3.3975	0.0018358	3.0403	0.0016428	540.3340898571215	38.486	0.14846	35.56	35.453	35.601	-2.9264					4	2	2	0	0	0	0.026802	1	1501	1501		34.173	0	1	7316.7	+		16093	22947	13094	13115	17982	17982					0.11369997639667417
HKVIRNFYDRY	11	Unmodified	_HKVIRNFYDRY_					0	0	0		tr|A0A553STH0|A0A553STH0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04830PE=4SV=1	tr|A0A553STH0|A0A553STH0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04830PE=4SV=1	tr|A0A553STH0|A0A553STH0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04830PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	504.2964172363281	3	504.268637	1509.78408	-1.0679	-0.00053849	0.24992	0.00012603	-0.81793	-0.00041246	504.2687692656806	104.5	1.1367	103.92	103.37	104.51	-0.57639					24	22	2	0	0	0	0.026416	1	9619	9619		16.53	6.8837	1	10193			16094	34487	13095	13116	17983	17983					0.04958031394403406
HKVIRNFYDRY	11	Unmodified	_HKVIRNFYDRY_					0	0	0		tr|A0A553STH0|A0A553STH0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04830PE=4SV=1	tr|A0A553STH0|A0A553STH0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04830PE=4SV=1	tr|A0A553STH0|A0A553STH0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04830PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		3	504.268637	1509.78408	-0.036602	-1.8457E-05	0.57348	0.00028919	0.53688	0.00027073	504.26933892204914	105.55	0.36247	104.2	103.99	104.35	-1.3482	0.14173	0.00034794	NaN	15.921	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8812.2			16095	34487	13095	13116							0.04958031394403406
HKVKHSDVIK	10	Unmodified	_HKVKHSDVIK_					0	0	0			REV__nc|ENSG00000169398|Q05397-7|PTK2	REV__nc|ENSG00000169398|Q05397-7|PTK2	MULTI-MSMS	OvCa9_classI_Rep4_	4	595.8541870117188	2	595.853847	1189.69314	-2.1329	-0.0012709	1.2727	0.00075837	-0.86016	-0.00051253	595.8544938651914	88.211	1.2045	85.608	85.327	86.532	-2.6027					65	23	4	0	0	0	0.48398	1	7531	7531		56.434	10.462	1	599470	+		16096	21460	13096	13117	17984	17984					0.10588187416919936
HKVLSFPGVT	10	Unmodified	_HKVLSFPGVT_					0	0	0		Harlequin-int_dup373|chr10:84170978-84171612:-|1.3789702665036672|0.2294773950638092|2.59|421.0|36|3|anti-sense;Harlequin-int_dup68|chr1:206053001-206053902:+|8.701031500351274|0.4316687424735471|4.33|427.0|33|1|anti-sense	Harlequin-int_dup373|chr10:84170978-84171612:-|1.3789702665036672|0.2294773950638092|2.59|421.0|36|3|anti-sense	Harlequin-int_dup373|chr10:84170978-84171612:-|1.3789702665036672|0.2294773950638092|2.59|421.0|36|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.323486328125	2	542.811116	1083.60768	-0.96288	-0.00052266	0.41941	0.00022766	-0.54347	-0.000295	542.8111330964107	74.283	1.8732	71.052	70.723	72.596	-3.2308					71	38	3	0	0	0	0.026606	1	5914	5914		71.877	20.542	1	530820			16097	14382	13097	13118	17985	17985					0.06922022231287883
HKYIKPREKV	10	Unmodified	_HKYIKPREKV_					0	0	0		nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13;METTL13|p.Q653Hfs*14|1|0.03|ENSG00000010165|chr1:171796615-171796615|G/-|frameshift_variant;ENSG00000010165|ENST00000361735|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	MULTI-SECPEP	OvCa9_classI_Rep2	2	432.9156799316406	3	433.262823	1296.76664	-1.0915	-0.00047292	-1.1867	-0.00051414	-2.2782	-0.00098706	433.262442039291	54.683	0.24971	51.869	51.772	52.022	-2.8139					8	4	2	0	0	0	0.027115	1	3771	3771		18.531	0.80952	1	14617			16098	938	13098	13119	17986	17986					0.13012735859388158
HKYLINFYRAI	11	Unmodified	_HKYLINFYRAI_					0	0	0		nc|ENSG00000139908|Q6SA08-3|TSSK4;nc|ENSG00000139908|Q6SA08|TSSK4;ENSG00000139908|ENST00000339917|TSSK4	nc|ENSG00000139908|Q6SA08-3|TSSK4	nc|ENSG00000139908|Q6SA08-3|TSSK4	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.2467346191406	3	479.938228	1436.79285	0.25253	0.0001212	2.2635	0.0010863	2.516	0.0012075	480.2739379582949	20.899	0.18346	20.899	20.741	20.924	0					6	3	2	0	0	0	0.026344	1	67	67		19.263	4.569	1	38024			16099	4809	13099	13120	17987	17987					0.09193005030897439
HLAEALHQA	9	Unmodified	_HLAEALHQA_					0	0	0		ENST00000524832.5_1_11:882499-902261:-|nuORF;ENST00000526714.5_1_11:870485-904855:-|nuORF;ENSG00000177830|ENST00000323578|CHID1;nc|ENSG00000177830|Q9BWS9-2|CHID1	ENST00000524832.5_1_11:882499-902261:-|nuORF	ENST00000524832.5_1_11:882499-902261:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	495.2615051269531	2	495.261791	988.509028	-0.95326	-0.00047211	0.56022	0.00027745	-0.39304	-0.00019466	495.2619881890787	43.459	0.94184	43.459	43.227	44.169	0					51	21	4	0	0	0	0.074342	1	2875	2875		104.75	54.722	1	842760			16100	7713	13100	13121	17988	17988					0.014314189862261628
HLAEHSLQV	9	Unmodified	_HLAEHSLQV_					0	0	0		ENSG00000093183|ENST00000264454|SEC22C;nc|ENSG00000093183|Q9BRL7-2|SEC22C	ENSG00000093183|ENST00000264454|SEC22C	ENSG00000093183|ENST00000264454|SEC22C	MULTI-MSMS	OvCa99_classI_Rep5	1	517.2765502929688	2	517.274898	1032.53524	-0.82649	-0.00042752	0.55206	0.00028557	-0.27443	-0.00014196	517.2748963603116	53.192	1.5496	53.192	52.873	54.422	0					74	34	4	0	0	0	0.059253	2	4212	4212;4242		113.41	36.565	1	5102400			16101	1910	13101	13122	17989;17990	17989					0.02027688157704688
HLAELQEKI	9	Unmodified	_HLAELQEKI_					0	0	0		nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP;PDE4DIP|p.R419Vfs*21|1|0.19|ENSG00000178104|chr1:148965542-148965542|T/-|frameshift_variant	nc|ENSG00000178104|Q5VU43-3|PDE4DIP;PDE4DIP|p.R419Vfs*21|1|0.19|ENSG00000178104|chr1:148965542-148965542|T/-|frameshift_variant	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-MSMS	OvCa99_classI_Rep5	1	540.8072509765625	2	540.806031	1079.59751	-0.19205	-0.00010386	-0.50921	-0.00027538	-0.70126	-0.00037925	540.8056955443415	65.17	1.1102	65.17	64.834	65.945	0					74	27	5	0	0	0	0.0078313	3	5981	5951;5981;6010		180.87	56.789	1	12199000			16102	7732;15485	13102	13123	17991;17992;17993	17992					0.060894145060501614
HLAEVLERV	9	Unmodified	_HLAEVLERV_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-MSMS	OvCa99_classI_Rep5	1	533.30859375	2	533.306198	1064.59784	2.0632	0.0011003	0.15233	8.124E-05	2.2156	0.0011816	533.3060633731086	78.362	1.7013	78.362	77.924	79.625	0					72	41	3	0	0	0	0.2784	1	7949	7949		65.465	8.7443	1	2706900			16103	5803	13103	13124	17994	17994					0.06812834225888764
HLAEVLERV	9	Unmodified	_HLAEVLERV_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-MATCH	OvCa9_classI_Rep3	3		2	533.306198	1064.59784	0.56939	0.00030366	-0.30759	-0.00016404	0.26181	0.00013962	533.3045739534368	80.429	0.56067	78.106	77.776	78.337	-2.3226	-0.12818	-0.00047322	NaN	65.465	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26283			16104	5803	13103	13124							0.06812834225888764
HLAKLQKL	8	Unmodified	_HLAKLQKL_					0	0	0		MECOM-LRRC31|1|fusion;nc|ENSG00000114248|Q6UY01-2|LRRC31;ENSG00000114248|ENST00000316428|LRRC31	MECOM-LRRC31|1|fusion	MECOM-LRRC31|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	475.8139343261719	2	475.810919	949.607286	3.0933	0.0014718	-2.5309	-0.0012042	0.56238	0.00026758	475.8093369321839	89.652	0.4971	89.652	89.394	89.891	0					23	11	3	0	0	0	0.66704	1	9594	9594		50.025	0	1	604750			16105	3015	13104	13125	17995	17995					0.13046647302076053
HLAKLQKLDL	10	Unmodified	_HLAKLQKLDL_					0	0	0		MECOM-LRRC31|1|fusion;nc|ENSG00000114248|Q6UY01-2|LRRC31;ENSG00000114248|ENST00000316428|LRRC31	MECOM-LRRC31|1|fusion	MECOM-LRRC31|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.8167114257812	2	589.866423	1177.71829	0.13695	8.078E-05	-0.62835	-0.00037064	-0.49141	-0.00028986	589.8664597106628	70.82	0.1162	70.82	70.761	70.877	0					4	2	2	0	0	0	0.026734	1	6820	6820		47.657	6.8792	1	152100			16106	3015	13105	13126	17996	17996					0.13654242219513435
HLAKVTAEV	9	Unmodified	_HLAKVTAEV_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;RPN1|p.R263Tfs*3|1|0.4|ENSG00000163902|chr3:128632004-128632005|-/T|frameshift_variant;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OvCa99_classI_Rep5	1	484.2831115722656	2	484.282192	966.549831	-0.58454	-0.00028308	0.51795	0.00025083	-0.066594	-3.225E-05	484.28228165325856	49.28	0.91257	49.28	49.031	49.944	0					38	20	2	0	0	0	0.1804	1	3678	3678		79.713	20.931	1	1174400			16107	6376	13106	13127	17997	17997					0.06521760305849966
HLALRPSQE	9	Unmodified	_HLALRPSQE_					0	0	0		ENST00000472410.5_1_1:27684311-27685985:-|nuORF	ENST00000472410.5_1_1:27684311-27685985:-|nuORF	ENST00000472410.5_1_1:27684311-27685985:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.7477416992188	2	525.788173	1049.56179	-1.4782	-0.0007772	0.55353	0.00029104	-0.92464	-0.00048616	525.7879857580444	45.944	1.3565	42.872	42.144	43.501	-3.0724					47	25	3	0	0	0	0.027462	1	2375	2375		47.657	6.8792	1	78668			16108	12393	13107	13128	17998	17998					0.03899377049060604
HLALRPSQE	9	Unmodified	_HLALRPSQE_					0	0	0		ENST00000472410.5_1_1:27684311-27685985:-|nuORF	ENST00000472410.5_1_1:27684311-27685985:-|nuORF	ENST00000472410.5_1_1:27684311-27685985:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	525.788173	1049.56179	-0.24161	-0.00012704	0.91234	0.0004797	0.67072	0.00035266	525.7883696184733	45.581	0.5033	42.872	42.647	43.15	-2.7097	6.6429E-05	0.00010996	NaN	39.253	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24290			16109	12393	13107	13128							0.03899377049060604
HLALSPPRE	9	Unmodified	_HLALSPPRE_					0	0	0		ENST00000260276.7_1_11:111750013-111750136:+|nuORF	ENST00000260276.7_1_11:111750013-111750136:+|nuORF	ENST00000260276.7_1_11:111750013-111750136:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	510.28729248046875	2	510.285266	1018.55598	-0.048367	-2.4681E-05	-0.23219	-0.00011849	-0.28056	-0.00014317	510.2850408267626	52.482	1.3522	52.482	51.995	53.347	0					77	30	4	0	0	0	0.18193	1	4099	4099		79.451	5.4763	1	3470500			16110	9847	13108	13129	17999	17999					0.04744278537373248
HLANIVERV	9	Unmodified	_HLANIVERV_					0	0	0		ENSG00000132274|ENST00000379965|TRIM22;nc|ENSG00000132274|Q8IYM9-2|TRIM22;ENST00000460454.1_1_11:5717462-5717939:+|nuORF	ENSG00000132274|ENST00000379965|TRIM22	ENSG00000132274|ENST00000379965|TRIM22	MULTI-MSMS	OvCa99_classI_Rep5	1	525.8076171875	2	525.806365	1049.59818	-0.05658	-2.975E-05	0.027145	1.4273E-05	-0.029435	-1.5477E-05	525.8063801164992	67.305	3.9154	67.305	66.531	70.447	0					245	96	4	0	0	0	0.033166	6	6262	6235;6262;6292;6322;6353;6386		132.76	31.456	1	31172000			16111	4120	13109	13130	18000;18001;18002;18003;18004;18005	18001					0.07536253945750104
HLAPAVIHAL	10	Unmodified	_HLAPAVIHAL_					0	0	0		ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF	ENSG00000156802|ENST00000287394|ATAD2	ENSG00000156802|ENST00000287394|ATAD2	MULTI-MSMS	OvCa99_classI_Rep5	1	521.3128662109375	2	521.313826	1040.6131	-0.56218	-0.00029307	-3.8569	-0.0020106	-4.419	-0.0023037	521.3116191875685	60.781	0.6372	60.781	60.434	61.071	0					23	13	2	0	0	0	0.49566	1	5322	5322		54.765	1.4132	1	1007000			16112	5857	13110	13131	18006	18006					0.09441745813751368
HLASLLEPLL	10	Unmodified	_HLASLLEPLL_					0	0	0			REV__ENSG00000221829|ENST00000378643|FANCG	REV__ENSG00000221829|ENST00000378643|FANCG	MULTI-MSMS	OvCa9_classI_Rep2	2	553.33154296875	2	553.334424	1104.6543	-2.8766	-0.0015917	-0.88706	-0.00049084	-3.7637	-0.0020826	553.3337794849177	152.41	1.17	152.18	151.83	153	-0.22696					55	23	3	0	0	0	0.81289	1	15495	15495		17.365	1.7232	1	86016	+		16113	23340	13111	13132	18007	18007					0.10615462062582992
HLASQLPRQYG	11	Unmodified	_HLASQLPRQYG_					0	0	0			REV__ENSG00000198768|ENST00000371149|APCDD1L	REV__ENSG00000198768|ENST00000371149|APCDD1L	MSMS	OvCa99_classI_Rep5	1	423.8940734863281	3	423.894799	1268.66257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.608	1	23.608	23.108	24.108	0								0	0	0	0.19474	1	351	351		19.263	1.7947	1		+		16114	23059	13112	13133	18008	18008					0.03898409031899064
HLAWAGRPN	9	Unmodified	_HLAWAGRPN_					0	0	0			REV__ENST00000462948.5_1_9:138392577-138393127:+|nuORF	REV__ENST00000462948.5_1_9:138392577-138393127:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	510.29351806640625	2	511.26995	1020.52535	0.28904	0.00014778	-1.2899	-0.00065947	-1.0008	-0.0005117	511.26917652433536	79.622	1.0597	77.282	76.852	77.912	-2.3399					58	20	4	0	0	0	0.027462	1	4261	4261		47.916	19.661	1	324350	+		16115	26121	13113	13134	18009	18009					0.015905449429851615
HLCNVPDLI	9	Unmodified	_HLCNVPDLI_					0	0	0		HEATR1|p.P2064Hfs*2|1|0.04|ENSG00000119285|chr1:236553627-236553627|G/-|frameshift_variant;ENSG00000119285|ENST00000366582|HEATR1;HEATR1|p.G1956Wfs*9|1|0.04|ENSG00000119285|chr1:236555353-236555354|-/A|frameshift_variant	HEATR1|p.P2064Hfs*2|1|0.04|ENSG00000119285|chr1:236553627-236553627|G/-|frameshift_variant	HEATR1|p.P2064Hfs*2|1|0.04|ENSG00000119285|chr1:236553627-236553627|G/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	512.2667846679688	2	512.268227	1022.5219	2.1939	0.0011239	-3.0135	-0.0015437	-0.81956	-0.00041984	512.2664448444929	95.765	0.58746	95.765	95.538	96.126	0					23	13	2	0	0	0	0.33652	1	10465	10465		58.782	2.0609	1	1285400			16116	3350	13114	13135	18010	18010					0.011541140541226014
HLDATKLLL	9	Unmodified	_HLDATKLLL_					0	0	0		nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	MULTI-MSMS	OvCa99_classI_Rep5	1	512.3142700195312	2	512.313492	1022.61243	2.2379	0.0011465	0.084105	4.3088E-05	2.322	0.0011896	512.3133813952836	95.098	3.4314	95.098	94.69	98.121	0					162	80	4	0	0	0	0.029147	3	10422	10361;10391;10422		136.27	56.817	1	10178000			16117	1196	13115	13136	18011;18012;18013	18013					0.10202906374036047
HLDNTPRWY	9	Unmodified	_HLDNTPRWY_					0	0	0		ENSG00000186472|ENST00000333891|PCLO;nc|ENSG00000186472|Q9Y6V0-6|PCLO;nc|ENSG00000186472|Q9Y6V0-3|PCLO	ENSG00000186472|ENST00000333891|PCLO	ENSG00000186472|ENST00000333891|PCLO	MULTI-MSMS	OvCa99_classI_Rep5	1	601.2880249023438	2	601.291079	1200.56761	-0.85405	-0.00051354	-1.9996	-0.0012023	-2.8536	-0.0017159	601.2898188795164	34.708	0.80162	34.708	34.444	35.246	0					44	16	4	0	0	0	0.3076	1	1692	1692		65.803	7.0212	1	339230			16118	8338	13116	13137	18014	18014					-0.024655244392988607
HLEAGHPELS	10	Unmodified	_HLEAGHPELS_					0	0	0		ZFHX4|p.S2870Mfs*29|1|0.03|ENSG00000091656|chr8:76855527-76855545|CAAGCCCATCCATCCATTT/-|frameshift_variant;nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ENSG00000091656|ENST00000651372|ZFHX4;ZFHX4|p.H1969Qfs*17|1|0.12|ENSG00000091656|chr8:76852827-76852828|-/GAAACCGACTAAAGAACCCT|frameshift_variant	ZFHX4|p.S2870Mfs*29|1|0.03|ENSG00000091656|chr8:76855527-76855545|CAAGCCCATCCATCCATTT/-|frameshift_variant	ZFHX4|p.S2870Mfs*29|1|0.03|ENSG00000091656|chr8:76855527-76855545|CAAGCCCATCCATCCATTT/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.275390625	2	545.269813	1088.52507	-0.53566	-0.00029208	3.6951	0.0020148	3.1594	0.0017227	545.2717437189638	38.751	1.3906	38.751	38.114	39.505	0					56	30	2	0	0	0	0.026752	1	2143	2143		20.947	1.8434	1	109530			16119	1875	13117	13138	18015	18015					-0.015649195675223382
HLEDWIRRR	9	Unmodified	_HLEDWIRRR_					0	0	0			REV__HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|261|3|anti-sense	REV__HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|261|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	427.2539978027344	3	427.570539	1279.68979	0.65124	0.00027845	-1.2993	-0.00055555	-0.64807	-0.00027709	427.56987533271143	38.614	1.141	35.687	35.403	36.544	-2.9264					48	22	4	0	0	0	0.027462	1	1539	1539		36.447	0	1	95989	+		16120	28230	13118	13139	18016	18016					0.06112937362922821
HLEFVNKPGD	10	Unmodified	_HLEFVNKPGD_					0	0	0			REV__tr|A0A7D6VTU5|A0A7D6VTU5_9CLOTNitrite/sulfitereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22795PE=4SV=1	REV__tr|A0A7D6VTU5|A0A7D6VTU5_9CLOTNitrite/sulfitereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22795PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2902221679688	2	578.293288	1154.57202	-7.6021	-0.0043963	1.2846	0.00074285	-6.3176	-0.0036534	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.72319	1	13148	13148		27.882	3.3631	1	1429200	+		16121	31633	13119	13140	18017	18017					0.0009193998362206912
HLEKALDYI	9	Unmodified	_HLEKALDYI_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	OvCa99_classI_Rep5	1	551.3024291992188	2	551.300581	1100.58661	1.4681	0.00080935	0.7657	0.00042213	2.2338	0.0012315	551.3008705568828	115.15	3.1895	115.15	114.7	117.88	0					161	68	5	0	0	0	0.36502	1	13126	13126		55.504	2.1528	1	1919600			16122	5537	13120	13141	18018	18018					0.04034012131751297
HLELLLGQIA	10	Unmodified	_HLELLLGQIA_					0	0	0		nc|ENSG00000117114|O95490-4|ADGRL2	nc|ENSG00000117114|O95490-4|ADGRL2	nc|ENSG00000117114|O95490-4|ADGRL2	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8294677734375	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.66721	1	11819	11819		34.173	3.8548	1	308210			16123	14982	13121	13142	18019	18019					0.10094577919812764
HLERATKP	8	Unmodified	_HLERATKP_					0	0	0		ENST00000608391.1_1_21:37692244-37692574:-|nuORF	ENST00000608391.1_1_21:37692244-37692574:-|nuORF	ENST00000608391.1_1_21:37692244-37692574:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	476.25323486328125	2	476.272158	950.529764	-0.29396	-0.00014	3.446	0.0016412	3.152	0.0015012	476.27184322984454	39	0.67073	39	38.705	39.376	0					30	14	3	0	0	0	0.028476	1	2270	2270		38.806	0	1	149280			16124	14296	13122	13143	18020	18020					0.05252009365892718
HLFLMLCFGA	10	Unmodified	_HLFLMLCFGA_					0	0	0			REV__chr14:94062621-94065779|133|19.53|0.06|8.3|-|1|TE_info:L1PB1,L1PB1_dup11175,L1,LINE,donor,+,94065779,94071367|DDX24,None|34	REV__chr14:94062621-94065779|133|19.53|0.06|8.3|-|1|TE_info:L1PB1,L1PB1_dup11175,L1,LINE,donor,+,94065779,94071367|DDX24,None|34	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.8327026367188	2	576.290648	1150.56674	0.62284	0.00035894	2.0439	0.0011779	2.6667	0.0015368	576.2911568243829	84.755	0.38289	82.097	81.966	82.349	-2.6584					13	7	2	0	0	0	0.026839	1	7132	7132		35.201	4.6971	1	40448	+		16125	15913	13123	13144	18021	18021					-0.002517784042083804
HLFLMVPK	8	Unmodified	_HLFLMVPK_					0	0	0			REV__ENSG00000169992|ENST00000302926|NLGN2	REV__ENSG00000169992|ENST00000302926|NLGN2	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.3236999511719	2	492.788598	983.562644	0.86164	0.00042461	1.6058	0.00079134	2.4675	0.0012159	492.7890392682427	80.058	1.4015	78.363	77.767	79.168	-1.6951					58	27	3	0	0	0	0.028476	1	6721	6721		41.208	0	1	140910	+		16126	21506	13124	13145	18022	18022					0.07020500164401255
HLGIVTGLCIS	11	Unmodified	_HLGIVTGLCIS_					0	0	0		tr|A0A7D6VS48|A0A7D6VS48_9CLOTNrampfamilydivalentmetaltransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_04260PE=4SV=1	tr|A0A7D6VS48|A0A7D6VS48_9CLOTNrampfamilydivalentmetaltransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_04260PE=4SV=1	tr|A0A7D6VS48|A0A7D6VS48_9CLOTNrampfamilydivalentmetaltransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_04260PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	556.8086547851562	2	556.810259	1111.60597	0.42358	0.00023585	-0.87055	-0.00048473	-0.44697	-0.00024888	556.8098048116499	121.74	1.2193	120.39	120.06	121.28	-1.3479					48	23	3	0	0	0	0.54764	1	11488	11488		49.442	13.823	1	101620			16127	34986	13125	13146	18023	18023					0.054626451510102925
HLGIVTGLCIS	11	Unmodified	_HLGIVTGLCIS_					0	0	0		tr|A0A7D6VS48|A0A7D6VS48_9CLOTNrampfamilydivalentmetaltransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_04260PE=4SV=1	tr|A0A7D6VS48|A0A7D6VS48_9CLOTNrampfamilydivalentmetaltransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_04260PE=4SV=1	tr|A0A7D6VS48|A0A7D6VS48_9CLOTNrampfamilydivalentmetaltransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_04260PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	556.810259	1111.60597	-0.54147	-0.0003015	0.9751	0.00054295	0.43363	0.00024145	556.8105884363808	120.49	1.1345	120.32	119.79	120.92	-0.17651	-0.043216	0.0015272	NaN	49.442	37	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52571			16128	34986	13125	13146							0.054626451510102925
HLGIVTGLCIS	11	Unmodified	_HLGIVTGLCIS_					0	0	0		tr|A0A7D6VS48|A0A7D6VS48_9CLOTNrampfamilydivalentmetaltransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_04260PE=4SV=1	tr|A0A7D6VS48|A0A7D6VS48_9CLOTNrampfamilydivalentmetaltransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_04260PE=4SV=1	tr|A0A7D6VS48|A0A7D6VS48_9CLOTNrampfamilydivalentmetaltransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_04260PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	556.810259	1111.60597	0.85452	0.0004758	-1.0428	-0.00058065	-0.1883	-0.00010485	556.8094578357867	121.4	0.9944	120.37	120.12	121.11	-1.0271	0.012861	-0.00071996	NaN	49.442	42	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97838			16129	34986	13125	13146							0.054626451510102925
HLGNVQITAV	10	Unmodified	_HLGNVQITAV_					0	0	0		ENSG00000128833|ENST00000261839|MYO5C;nc|ENSG00000128833|Q9NQX4-2|MYO5C;MYO5C|p.W521Sfs*6|1|0.26|ENSG00000128833|chr15:52251489-52251490|CC/-|frameshift_variant;ENST00000560809.5_1_15:52548900-52557395:-|nuORF;ENST00000558902.5_1_15:52548900-52571163:-|nuORF	ENSG00000128833|ENST00000261839|MYO5C;ENST00000558902.5_1_15:52548900-52571163:-|nuORF	ENSG00000128833|ENST00000261839|MYO5C	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2994384765625	2	526.298373	1050.58219	-0.178	-9.3679E-05	4.4135	0.0023228	4.2355	0.0022291	526.3004268561904	31.981	0.24836	31.981	31.757	32.006	0					7	4	2	0	0	0	0.026994	1	1336	1336		19.104	0	1	15974			16130	3907;13707	13126	13147	18024	18024					0.05892547708845086
HLGPEGRSV	9	Unmodified	_HLGPEGRSV_					0	0	0		nc|ENSG00000291317|P0DTL5|TMEM276	nc|ENSG00000291317|P0DTL5|TMEM276	nc|ENSG00000291317|P0DTL5|TMEM276	MULTI-MSMS	OvCa99_classI_Rep5	1	476.25384521484375	2	476.253966	950.493378	-0.33366	-0.00015891	-0.69585	-0.0003314	-1.0295	-0.00049031	476.2539054945066	38.729	2.0845	38.729	38.394	40.479	0					98	46	5	0	0	0	0.27001	2	2236	2213;2236		66.429	10.925	1	6094900			16131	15402	13127	13148	18025;18026	18026					0.01615132469191849
HLGQIITFV	9	Unmodified	_HLGQIITFV_					0	0	0		tr|A0A553SF24|A0A553SF24_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_08085PE=4SV=1	tr|A0A553SF24|A0A553SF24_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_08085PE=4SV=1	tr|A0A553SF24|A0A553SF24_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_08085PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	514.2978515625	2	514.300384	1026.58622	-4.6194	-0.0023758	0.60001	0.00030858	-4.0194	-0.0020672	514.3006222329757	152.39	0.9877	151.42	151.04	152.03	-0.97299					50	19	4	0	0	0	0.64427	1	13017	13017		26.693	5.746	1	117900			16132	32982	13128	13149	18027	18027					0.07398637202550162
HLGRATRTL	9	Unmodified	_HLGRATRTL_					0	0	0			REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|226|2|anti-sense	REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|226|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	512.8053588867188	2	512.804157	1023.59376	0.96769	0.00049623	1.7578	0.00090143	2.7255	0.0013977	512.8048988441653	129.99	1.0876	129.77	129.46	130.55	-0.22696					55	21	4	0	0	0	0.38969	1	12784	12784		52.937	3.4952	1	154290	+		16133	28259	13129	13150	18028	18028					0.08290789522857267
HLGVWHHP	8	Unmodified	_HLGVWHHP_					0	0	0			REV__ENST00000391403.3_2_18:19996123-19996312:-|nuORF	REV__ENST00000391403.3_2_18:19996123-19996312:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.29010009765625	2	491.753936	981.493319	1.2004	0.00059032	-0.26399	-0.00012982	0.93645	0.0004605	491.7537529909778	79.155	1.1561	79.155	78.955	80.111	0					36	28	2	0	0	0	0.028476	1	8186	8186		54.895	6.979	1	658520	+		16134	25238	13130	13151	18029	18029					0.0018317725983933997
HLHALHGSPP	10	Unmodified	_HLHALHGSPP_					0	0	0			REV__ENST00000593832.1_1_19:17690896-17691259:+|nuORF	REV__ENST00000593832.1_1_19:17690896-17691259:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	533.798828125	2	533.283057	1064.55156	0.79035	0.00042148	-1.6514	-0.00088065	-0.86103	-0.00045917	533.2819230496839	89.831	1.0393	88.529	88.136	89.176	-1.302					48	20	4	0	0	0	0.026669	1	7891	7891		38.806	0	1	119400	+		16135	27970	13131	13152	18030	18030					0.021868141144750552
HLHAVQVQS	9	Unmodified	_HLHAVQVQS_					0	0	0			REV__ENST00000377184.7_1_17:41954117-41954384:-|nuORF	REV__ENST00000377184.7_1_17:41954117-41954384:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	509.81146240234375	2	509.775065	1017.53558	0.45696	0.00023295	2.8188	0.0014369	3.2757	0.0016699	509.776402469606	69.659	1.5905	66.861	65.88	67.47	-2.7977					44	31	2	0	0	0	0.027462	1	3068	3068		23.042	7.4007	1	16677	+		16136	25116	13132	13153	18031	18031					0.027511078775773967
HLHAVQVQS	9	Unmodified	_HLHAVQVQS_					0	0	0			REV__ENST00000377184.7_1_17:41954117-41954384:-|nuORF	REV__ENST00000377184.7_1_17:41954117-41954384:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	509.775065	1017.53558	0.14306	7.293E-05	3.3666	0.0017162	3.5096	0.0017891	509.77675597747	66.685	2.1019	66.685	65.426	67.528	0	-0.088032	0.00024876	NaN	27.882	79	52	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345960	+		16137	25116	13132	13153							0.027511078775773967
HLHDLSWVK	9	Unmodified	_HLHDLSWVK_					0	0	0			REV__ENST00000520647.5_1_5:153789264-153792107:+|nuORF	REV__ENST00000520647.5_1_5:153789264-153792107:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	567.8053588867188	2	567.806365	1133.59818	-0.68721	-0.0003902	0.078838	4.4765E-05	-0.60837	-0.00034544	567.8063905134725	69.084	9.6506	66.464	65.77	75.42	-2.6203					413	186	6	0	0	0	0.38529	1	5639	5639		53.351	2.016	1	4386800	+		16138	27057	13133	13154	18032	18032					0.03672253945751436
HLHLLQLHL	9	Unmodified	_HLHLLQLHL_					0	0	0			REV__ENST00000293328.7_1_17:40353648-40353780:-|nuORF	REV__ENST00000293328.7_1_17:40353648-40353780:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3441772460938	2	562.340375	1122.6662	1.2434	0.00069921	4.1981	0.0023608	5.4415	0.00306	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.65476	1	14150	14150		25.45	3.4903	1	683710	+		16139	24171	13134	13155	18033	18033					0.10977123596421734
HLHLYYDLI	9	Unmodified	_HLHLYYDLI_					0	0	0		nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8	nc|ENSG00000156931|Q8N3P4-2|VPS8	nc|ENSG00000156931|Q8N3P4-2|VPS8	MULTI-MSMS	OvCa99_classI_Rep5	1	593.8128662109375	2	593.816399	1185.61824	1.5039	0.00089301	-3.0814	-0.0018298	-1.5776	-0.00093679	593.8145077526559	79.139	1.8288	79.139	78.83	80.659	0					125	44	5	0	0	0	0.32337	1	8215	8215		60.294	1.512	1	24225000			16140	5864	13135	13156	18034	18034					0.03286004885694638
HLHTPRHVL	9	Unmodified	_HLHTPRHVL_					0	0	0		ENST00000336798.11_2_1:31345142-31345343:-|nuORF	ENST00000336798.11_2_1:31345142-31345343:-|nuORF	ENST00000336798.11_2_1:31345142-31345343:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.754638671875	2	555.319974	1108.6254	0.86686	0.00048138	4.0486	0.0022483	4.9154	0.0027296	555.3222028984475	151.87	0.37048	151.87	151.65	152.02	0					10	7	2	0	0	0	0.027462	1	17791	17791		35.618	11.416	1	48001			16141	10514	13136	13157	18035	18035					0.07542782276800608
HLHYTVSI	8	Unmodified	_HLHYTVSI_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.2645568847656	2	485.261259	968.507966	-0.39048	-0.00018949	4.1036	0.0019913	3.7131	0.0018018	485.2631376922538	55.94	1.2662	52.646	52.412	53.679	-3.2944					47	24	4	0	0	0	0.52992	1	3556	3556		74.517	11.21	1	442050			16142	973	13137	13158	18036	18036					0.022452046173157214
HLIEKMFQ	8	Unmodified	_HLIEKMFQ_					0	0	0		ENSG00000146085|ENST00000274813|MMUT	ENSG00000146085|ENST00000274813|MMUT	ENSG00000146085|ENST00000274813|MMUT	MULTI-MSMS	OvCa9_classI_Rep2	2	523.2779541015625	2	523.278595	1044.54264	1.3652	0.0007144	-1.7145	-0.00089719	-0.34931	-0.00018279	523.2775136788366	29.663	0.92439	26.953	26.732	27.656	-2.7097					38	18	3	0	0	0	0.75241	1	738	738		25.45	1.2474	1	85060			16143	5265	13138	13159	18037	18037					0.02214704433777115
HLIEKSFLA	9	Unmodified	_HLIEKSFLA_					0	0	0		ENST00000482059.6_1_7:80267993-80269165:+|nuORF	ENST00000482059.6_1_7:80267993-80269165:+|nuORF	ENST00000482059.6_1_7:80267993-80269165:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	529.3065185546875	2	529.305667	1056.59678	2.1977	0.0011633	-0.74263	-0.00039308	1.4551	0.00077019	529.3051538158101	74.939	1.7213	74.939	74.478	76.199	0					127	42	5	0	0	0	0.2422	1	7420	7420		69.628	6.3214	1	17099000			16144	12564	13139	13160	18038	18038					0.0707461985698501
HLIELLKR	8	Unmodified	_HLIELLKR_					0	0	0		CON__Q2YDI2	CON__Q2YDI2	CON__Q2YDI2	MULTI-MSMS	OvCa9_classI_Rep3	3	511.3276062011719	2	511.329476	1020.6444	-5.3559	-0.0027386	0.93899	0.00048013	-4.4169	-0.0022585	511.3298778479252	153.96	1.1884	152.95	152.62	153.81	-1.0076					68	24	4	0	0	0	0.75915	1	13243	13243		20.482	1.1219	1	338570		+	16145	643	13140	13161	18039	18039					0.13490318847846083
HLIKMEKVV	9	Unmodified	_HLIKMEKVV_					0	0	0			REV__ENST00000460981.1_1_6:111714035-111726820:-|nuORF	REV__ENST00000460981.1_1_6:111714035-111726820:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	548.8325805664062	2	548.830995	1095.64744	-1.1308	-0.00062064	4.1462	0.0022756	3.0154	0.0016549	548.833303772913	27.816	0.79838	27.816	27.591	28.39	0					50	15	5	0	0	0	0.18193	1	850	850		79.451	5.196	1	2769400	+		16146	26093	13141	13162	18040	18040					0.10343825910354099
HLILRQTRGT	10	Unmodified	_HLILRQTRGT_					0	0	0			REV__ENST00000438032.5_1_1:21106987-21113725:-|nuORF	REV__ENST00000438032.5_1_1:21106987-21113725:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8570556640625	2	597.856921	1193.69929	-1.9041	-0.0011384	0.86104	0.00051478	-1.0431	-0.00062361	597.8573316932594	144.83	3.9651	143.86	141.71	145.68	-0.97301					192	79	4	0	0	0	0.74374	1	12213	12213		25.574	2.0514	1	187110	+		16147	25805	13142	13163	18041	18041					0.11018705648439209
HLILRQTRGT	10	Unmodified	_HLILRQTRGT_					0	0	0			REV__ENST00000438032.5_1_1:21106987-21113725:-|nuORF	REV__ENST00000438032.5_1_1:21106987-21113725:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8551025390625	2	597.856921	1193.69929	-2.7036	-0.0016164	1.7084	0.0010214	-0.99524	-0.00059501	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.75313	1	12372	12372		24.519	4.5224	1	591030	+		16148	25805	13142	13163	18042	18042					0.11018705648439209
HLILRQTRGT	10	Unmodified	_HLILRQTRGT_					0	0	0			REV__ENST00000438032.5_1_1:21106987-21113725:-|nuORF	REV__ENST00000438032.5_1_1:21106987-21113725:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	598.3583374023438	2	597.856921	1193.69929	-1.5377	-0.00091935	0.67572	0.00040398	-0.86202	-0.00051536	597.8570606153338	148.28	4.8676	146.85	145.38	150.25	-1.435					291	102	5	0	0	0	0.75313	2	14994	14570;14994		24.519	4.5224	1	767860	+		16149	25805	13142	13163	18043;18044	18044					0.11018705648439209
HLILRQTRGT	10	Unmodified	_HLILRQTRGT_					0	0	0			REV__ENST00000438032.5_1_1:21106987-21113725:-|nuORF	REV__ENST00000438032.5_1_1:21106987-21113725:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8593139648438	2	597.856921	1193.69929	-3.2384	-0.0019361	2.4892	0.0014882	-0.74918	-0.0004479	597.8582084456802	152.89	1.1226	151.46	151.04	152.16	-1.4351					61	26	3	0	0	0	0.78463	1	15109	15109		20.947	1.587	1	50972	+		16150	25805	13142	13163	18045	18045					0.11018705648439209
HLKDYVCIK	9	Unmodified	_HLKDYVCIK_					0	0	0			REV__ENSG00000083093|ENST00000261584|PALB2	REV__ENSG00000083093|ENST00000261584|PALB2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	558.817626953125	2	559.804977	1117.5954	0.66705	0.00037342	-4.1488	-0.0023225	-3.4817	-0.0019491	559.8024160598146	46.92	1.0774	43.848	43.294	44.371	-3.0724					49	20	3	0	0	0	0.02744	1	2439	2439		62.107	7.3311	1	104370	+		16151	17094	13143	13164	18046	18046					0.04130662496572768
HLKEPRPR	8	Unmodified	_HLKEPRPR_					0	0	0		ENSG00000105429|ENST00000251268|MEGF8;nc|ENSG00000105429|Q7Z7M0-2|MEGF8;MEGF8|p.R1953Pfs*3|1|0.11|ENSG00000105429|chr19:42362390-42362391|-/C|frameshift_variant	ENSG00000105429|ENST00000251268|MEGF8	ENSG00000105429|ENST00000251268|MEGF8	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.822998046875	2	516.8067	1031.59885	-0.77199	-0.00039897	-0.70242	-0.00036301	-1.4744	-0.00076198	516.8062605056803	24.713	0.25248	24.713	24.586	24.838	0					5	4	2	0	0	0	0.028476	1	491	491		7.6903	0	1	15756			16152	2459	13144	13165	18047	18047					0.08431093385456734
HLKHCSAL	8	Unmodified	_HLKHCSAL_					0	0	0			REV__ENST00000369535.4_1_1:115247982-115248144:-|nuORF	REV__ENST00000369535.4_1_1:115247982-115248144:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	454.743896484375	2	454.742179	907.469806	0.31915	0.00014513	0.32985	0.00015	0.649	0.00029513	454.7419575726785	57.273	0.56012	57.273	57.048	57.609	0					28	12	3	0	0	0	0.7043	1	4801	4801		42.474	1.9018	1	736870	+		16153	24940	13145	13166	18048	18048					0.012369954310202047
HLKHCSAL	8	Unmodified	_HLKHCSAL_					0	0	0			REV__ENST00000369535.4_1_1:115247982-115248144:-|nuORF	REV__ENST00000369535.4_1_1:115247982-115248144:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	454.742179	907.469806	0.31915	0.00014513	0.32985	0.00015	0.649	0.00029513	454.7419575726785	57.273	0.56012	57.273	57.048	57.609	0	0.058	0.00080087	NaN	42.474	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	736870	+		16154	24940	13145	13166							0.012369954310202047
HLKHCSAL	8	Unmodified	_HLKHCSAL_					0	0	0			REV__ENST00000369535.4_1_1:115247982-115248144:-|nuORF	REV__ENST00000369535.4_1_1:115247982-115248144:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	454.742179	907.469806	0.70645	0.00032125	-2.1797	-0.00099121	-1.4733	-0.00066996	454.7412491241512	60.587	0.5468	57.157	56.848	57.395	-3.43	-0.058	-0.0014815	NaN	42.474	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19781	+		16155	24940	13145	13166							0.012369954310202047
HLKIHSGLK	9	Unmodified	_HLKIHSGLK_					0	0	0		nc|ENSG00000171817|Q8NDQ6-2|ZNF540;nc|ENSG00000171817|Q8NDQ6-4|ZNF540;ENST00000589285.1_1_19:38102250-38104161:+|nuORF;ENSG00000171817|ENST00000316433|ZNF540	nc|ENSG00000171817|Q8NDQ6-2|ZNF540	nc|ENSG00000171817|Q8NDQ6-2|ZNF540	MULTI-MSMS	OvCa9_classI_Rep2	2	516.8187255859375	2	516.819276	1031.624	-2.2063	-0.0011403	1.832	0.0009468	-0.37432	-0.00019346	516.8201011099436	36.791	3.1093	34.081	33.844	36.953	-2.7097					122	62	3	0	0	0	0.35444	1	1649	1649		56.721	1.9447	1	185190			16156	7236	13146	13167	18049	18049					0.10945148188034182
HLKKLGCRIV	10	Unmodified	_HLKKLGCRIV_					0	0	0		ENSG00000163781|ENST00000260810|TOPBP1;TOPBP1|p.R388Vfs*5|1|0.21|ENSG00000163781|chr3:133649871-133649871|G/-|frameshift_variant	ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	MULTI-MSMS	OvCa9_classI_Rep2	2	583.8588256835938	2	583.86316	1165.71177	-4.259	-0.0024867	-3.0218	-0.0017643	-7.2808	-0.004251	583.8612282732444	154.9	1.2136	154.67	154.34	155.56	-0.22696					82	33	4	0	0	0	0.81289	1	15835	15835		17.365	3.2278	1	148650			16157	6358	13147	13168	18050	18050					0.1355402578712983
HLKKNLSK	8	Unmodified	_HLKKNLSK_					0	0	0		nc|ENSG00000197415|Q14D04-2|VEPH1;ENSG00000197415|ENST00000362010|VEPH1	nc|ENSG00000197415|Q14D04-2|VEPH1	nc|ENSG00000197415|Q14D04-2|VEPH1	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.7918701171875	2	484.306001	966.597449	-0.86033	-0.00041666	1.1057	0.00053549	0.24537	0.00011883	484.30663015374176	50.031	0.52084	50.031	49.635	50.156	0					17	11	2	0	0	0	0.028476	1	3754	3754		38.806	26.599	1	120310			16158	8710	13148	13169	18051	18051					0.11281459296719731
HLKLGEVSV	9	Unmodified	_HLKLGEVSV_					0	0	0		nc|ENSG00000132780|P49321-2|NASP;nc|ENSG00000132780|P49321-4|NASP;ENSG00000132780|ENST00000350030|NASP;nc|ENSG00000132780|P49321-3|NASP	nc|ENSG00000132780|P49321-2|NASP	nc|ENSG00000132780|P49321-2|NASP	MULTI-MSMS	OvCa99_classI_Rep5	1	491.2914123535156	2	491.290017	980.565481	1.5388	0.000756	0.89055	0.00043752	2.4294	0.0011935	491.2903082783632	79.445	2.5374	79.445	78.75	81.288	0					118	61	3	0	0	0	0.094616	4	8084	8084;8113;8149;8216		98.629	39.847	1	5599900			16159	4173	13149	13170	18052;18053;18054;18055	18052					0.07442046822905013
HLKLSSQNL	9	Unmodified	_HLKLSSQNL_					0	0	0			REV__ENSG00000196605|ENST00000397902|ZNF846	REV__ENSG00000196605|ENST00000397902|ZNF846	MULTI-MSMS	OvCa99_classI_Rep5	1	520.2998046875	2	520.298373	1038.58219	2.0573	0.0010704	3.3344	0.0017349	5.3917	0.0028053	520.3004260949111	86.721	0.50116	86.721	86.471	86.972	0					33	11	4	0	0	0	0.21231	1	9156	9156		74.255	2.8771	1	1643000	+		16160	22849	13150	13171	18056	18056					0.06444547708861137
HLKRFAKI	8	Unmodified	_HLKRFAKI_					0	0	0			REV__tr|A0A7D6ZSV1|A0A7D6ZSV1_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_17555PE=4SV=1	REV__tr|A0A7D6ZSV1|A0A7D6ZSV1_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_17555PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	506.8239440917969	2	506.824361	1011.63417	0.5346	0.00027095	-2.4805	-0.0012572	-1.9459	-0.00098622	506.82301829745086	161.03	0.50174	161.03	160.81	161.31	0					17	9	2	0	0	0	0.75661	1	18898	18898		19.36	1.0356	1	117260	+		16161	32193	13151	13172	18057	18057					0.12881755913281268
HLKRKYRNQK	10	Unmodified	_HLKRKYRNQK_					0	0	0		JMJD6|p.R89H|1|0.32|ENSG00000070495|chr17:76725719-76725719|C/T|missense_variant	JMJD6|p.R89H|1|0.32|ENSG00000070495|chr17:76725719-76725719|C/T|missense_variant	JMJD6|p.R89H|1|0.32|ENSG00000070495|chr17:76725719-76725719|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	457.6082458496094	3	457.609105	1369.80549	-6.2056	-0.0028397	4.0929	0.0018729	-2.1127	-0.00096677	457.6108688134911	157.03	3.4081	155.86	154.91	158.32	-1.1707					147	80	2	0	0	0	0.85808	1	13625	13625		11.636	1.9898	1	68588			16162	14514	13152	13173	18058	18058					0.13537461213786628
HLKSHGRLI	9	Unmodified	_HLKSHGRLI_					0	0	0		tr|A0A7D6ZNE4|A0A7D6ZNE4_9CLOTDNApolymeraseIVOS=ClostridiumintestinaleOX=36845GN=dinBPE=3SV=1	tr|A0A7D6ZNE4|A0A7D6ZNE4_9CLOTDNApolymeraseIVOS=ClostridiumintestinaleOX=36845GN=dinBPE=3SV=1	tr|A0A7D6ZNE4|A0A7D6ZNE4_9CLOTDNApolymeraseIVOS=ClostridiumintestinaleOX=36845GN=dinBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.6227416992188	2	530.82235	1059.63015	-0.25872	-0.00013733	1.2099	0.00064223	0.95117	0.0005049	531.3225795636066	42.818	0.21692	42.818	42.753	42.97	0					8	4	2	0	0	0	0.027462	1	2788	2788		23.042	3.6825	1	28193			16163	35676	13153	13174	18059	18059					0.10271666419589565
HLKSLGLSFL	10	Unmodified	_HLKSLGLSFL_					0	0	0			REV__ENST00000461319.5_1_2:27425724-27426164:-|nuORF	REV__ENST00000461319.5_1_2:27425724-27426164:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	557.8311157226562	2	557.834591	1113.65463	-4.2734	-0.0023838	-1.6081	-0.00089706	-5.8815	-0.0032809	557.8334969446843	158.51	0.39156	158.28	158.19	158.58	-0.22696					10	7	2	0	0	0	0.84374	1	16102	16102		13.454	0	1	10429	+		16164	26095	13154	13175	18060	18060					0.10234881782434968
HLKSLGLSFL	10	Unmodified	_HLKSLGLSFL_					0	0	0			REV__ENST00000461319.5_1_2:27425724-27426164:-|nuORF	REV__ENST00000461319.5_1_2:27425724-27426164:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	557.834591	1113.65463	-4.2734	-0.0023838	-1.6081	-0.00089706	-5.8815	-0.0032809	557.8334969446843	158.51	0.39156	158.28	158.19	158.58	-0.22696	0	0	NaN	13.454	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10429	+		16165	26095	13154	13175							0.10234881782434968
HLKWPFLRKQS	11	Unmodified	_HLKWPFLRKQS_					0	0	0			REV__ENSG00000100365|ENST00000248899|NCF4	REV__ENSG00000100365|ENST00000248899|NCF4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.7720947265625	3	480.613856	1438.81974	-0.861	-0.00041381	4.053	0.0019479	3.192	0.0015341	480.6157158144705	73.496	1.0015	70.1	69.833	70.834	-3.3961					33	20	2	0	0	0	0.026145	1	5699	5699		8.7993	0	1	163860	+		16166	17407	13155	13176	18061	18061					0.11788113642046483
HLLADETPY	9	Unmodified	_HLLADETPY_					0	0	0		tr|A0A553SUE0|A0A553SUE0_NIACIasparaginesynthase(glutamine-hydrolyzing)OS=NialliacirculansOX=1397GN=CEQ21_06805PE=3SV=1	tr|A0A553SUE0|A0A553SUE0_NIACIasparaginesynthase(glutamine-hydrolyzing)OS=NialliacirculansOX=1397GN=CEQ21_06805PE=3SV=1	tr|A0A553SUE0|A0A553SUE0_NIACIasparaginesynthase(glutamine-hydrolyzing)OS=NialliacirculansOX=1397GN=CEQ21_06805PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.80419921875	2	529.761289	1057.50803	2.0923	0.0011084	0.13376	7.0863E-05	2.2261	0.0011793	529.7612299759192	77.274	0.45917	77.274	77.085	77.544	0					19	10	2	0	0	0	0.027441	1	7789	7789		42.474	0	1	1104400			16167	34599	13156	13177	18062	18062					-0.01842840173321747
HLLALWMI	8	Oxidation (M)	_HLLALWM(Oxidation (M))I_		HLLALWM(1)I		HLLALWM(81)I	0	0	1		ENST00000406439.7_2_1:43869410-43870111:+|nuORF	ENST00000406439.7_2_1:43869410-43870111:+|nuORF	ENST00000406439.7_2_1:43869410-43870111:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	506.78662109375	2	506.786056	1011.55756	0.81531	0.00041319	-4.0432	-0.002049	-3.2278	-0.0016358	506.78380326622425	158.45	0.51129	158.45	158.23	158.74	0					21	10	3	0	0	0	0.46547	1	18567	18567		80.997	26.232	1	139320			16168	11481	13157	13178	18063	18063		322			0.052241963017877424
HLLCRRYIL	9	Unmodified	_HLLCRRYIL_					0	0	0			REV__ENSG00000125484|ENST00000372146|GTF3C4	REV__ENSG00000125484|ENST00000372146|GTF3C4	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.3145141601562	2	593.84751	1185.68047	2.5396	0.0015081	-4.0403	-0.0023993	-1.5007	-0.00089119	593.8449230952555	80.399	0.58392	80.399	79.987	80.571	0					20	13	2	0	0	0	0.027417	1	8185	8185		55.504	0.72789	1	394450	+		16169	18727	13158	13179	18064	18064					0.09505452753046484
HLLDFPNIVI	10	Unmodified	_HLLDFPNIVI_					0	0	0		PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant;PRPF8|p.Q2065Hfs*8|1|0.04|ENSG00000174231|chr17:1653809-1653810|-/G|frameshift_variant;ENSG00000174231|ENST00000304992|PRPF8;PITPNA-PRPF8|1|fusion	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant;PITPNA-PRPF8|1|fusion	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	590.8527221679688	2	590.839874	1179.66519	1.4195	0.00083872	-0.42247	-0.00024961	0.99707	0.00058911	590.8395219339804	149.54	0.34171	149.54	149.26	149.6	0					21	6	4	0	0	0	0.026906	1	17510	17510		49.536	23.962	1	550070			16170	7449;15503	13159	13180	18065	18065					0.082548644368444
HLLDHIQTL	9	Unmodified	_HLLDHIQTL_					0	0	0			REV__sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	REV__sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.78466796875	2	545.306198	1088.59784	0.11115	6.0611E-05	3.1617	0.0017241	3.2729	0.0017847	545.3078608649156	58.185	0.50448	58.185	57.941	58.446	0					22	11	3	0	0	0	0.027462	1	4950	4950		35.618	0	1	429690	+		16171	29433	13160	13181	18066	18066					0.057088342259021374
HLLDHIQTL	9	Unmodified	_HLLDHIQTL_					0	0	0			REV__sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	REV__sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	545.306198	1088.59784	-0.2903	-0.0001583	-1.0316	-0.00056251	-1.3219	-0.00072081	545.3039906570344	61.678	0.23372	58.22	58.01	58.244	-3.4577	0.017885	-0.0040414	NaN	44.117	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10757	+		16172	29433	13160	13181							0.057088342259021374
HLLENAEGTT	10	Unmodified	_HLLENAEGTT_					0	0	0			REV__nc|ENSG00000104755|Q99965-2|ADAM2	REV__nc|ENSG00000104755|Q99965-2|ADAM2	MULTI-SECPEP	OvCa9_classI_Rep3	3	543.3023681640625	2	542.767103	1083.51965	1.6185	0.00087845	2.5092	0.0013619	4.1276	0.0022403	542.7676583468169	123.11	0.77899	122.07	121.89	122.67	-1.0377					25	14	2	0	0	0	0.026826	1	9476	9476		36.447	4.4919	1	32164	+		16173	17678	13161	13182	18067	18067					-0.018766431499898317
HLLEPVRW	8	Unmodified	_HLLEPVRW_					0	0	0			REV__nc|ENSG00000068878|Q14997-3|PSME4	REV__nc|ENSG00000068878|Q14997-3|PSME4	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2425537109375	2	525.298176	1048.5818	-1.2374	-0.00064998	3.8239	0.0020087	2.5866	0.0013587	525.3005060295666	65.924	0.62388	65.924	65.748	66.372	0					20	15	2	0	0	0	0.028476	1	6056	6056		12.959	0	1	1179300	+		16174	16860	13162	13183	18068	18068					0.05945172779661334
HLLERQIC	8	Unmodified	_HLLERQIC_					0	0	0			REV__ENST00000544844.5_1_11:64085215-64085383:-|nuORF	REV__ENST00000544844.5_1_11:64085215-64085383:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	506.2757568359375	2	506.273844	1010.53313	1.7132	0.00086734	-1.7996	-0.00091107	-0.086391	-4.3737E-05	506.2727467608177	54.771	2.6321	51.6	50.779	53.411	-3.1715					173	88	3	0	0	0	0.75241	1	1361	1361		25.45	1.2474	1	154000	+		16175	27406	13163	13184	18069	18069					0.028289361482507047
HLLGGHSRLP	10	Unmodified	_HLLGGHSRLP_					0	0	0		ENST00000400445.7_1_13:35516555-35516726:+|nuORF	ENST00000400445.7_1_13:35516555-35516726:+|nuORF	ENST00000400445.7_1_13:35516555-35516726:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.3275146484375	2	543.811982	1085.60941	-0.68154	-0.00037063	-0.74871	-0.00040716	-1.4303	-0.00077779	543.8108606967974	39.582	0.46357	39.582	39.376	39.84	0					26	10	4	0	0	0	0.026915	1	2323	2323		35.618	12.576	1	518920			16176	11409	13164	13185	18070	18070					0.07003076039904954
HLLGHLEQA	9	Unmodified	_HLLGHLEQA_					0	0	0		ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15;nc|ENSG00000141956|P57071|PRDM15;nc|ENSG00000141956|P57071-6|PRDM15;nc|ENSG00000141956|P57071-5|PRDM15	ENSG00000141956|ENST00000398548|PRDM15	ENSG00000141956|ENST00000398548|PRDM15	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.3016662597656	2	509.277441	1016.54033	-0.26422	-0.00013456	0.019092	9.7233E-06	-0.24513	-0.00012484	509.2773509820573	58.812	0.51073	58.812	58.572	59.083	0					28	12	3	0	0	0	0.027459	1	5054	5054		44.377	1.981	1	659480			16177	4947	13165	13186	18071	18071					0.032719920203248876
HLLGHLEQA	9	Unmodified	_HLLGHLEQA_					0	0	0		ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15;nc|ENSG00000141956|P57071|PRDM15;nc|ENSG00000141956|P57071-6|PRDM15;nc|ENSG00000141956|P57071-5|PRDM15	ENSG00000141956|ENST00000398548|PRDM15	ENSG00000141956|ENST00000398548|PRDM15	MULTI-MATCH	OvCa9_classI_Rep2	2		2	509.277441	1016.54033	-1.49	-0.0007588	-0.72855	-0.00037104	-2.2185	-0.0011298	509.27636332066743	61.533	0.62171	58.774	58.515	59.137	-2.7593	-0.019145	-0.00066206	NaN	44.377	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18375			16178	4947	13165	13186							0.032719920203248876
HLLIGGVMIAL	11	Unmodified	_HLLIGGVMIAL_					0	0	0			REV__tr|A0A553SRG5|A0A553SRG5_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_01035PE=4SV=1	REV__tr|A0A553SRG5|A0A553SRG5_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_01035PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	568.8472900390625	2	568.846645	1135.67874	-0.94066	-0.00053509	0.78408	0.00044602	-0.15658	-8.9071E-05	568.8468987403617	122.03	1.7301	121.81	120.93	122.66	-0.21803					88	34	3	0	0	0	0.64499	1	11837	11837		40.573	4.1259	1	269790	+		16179	30728	13166	13187	18072	18072					0.11632398944448141
HLLIKTWAK	9	Unmodified	_HLLIKTWAK_					0	0	0			REV__TOP2A|p.D196Gfs*45|1|0.45|ENSG00000131747|chr17:40412961-40412962|-/CCATC|frameshift_variant	REV__TOP2A|p.D196Gfs*45|1|0.45|ENSG00000131747|chr17:40412961-40412962|-/CCATC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.3281860351562	2	555.345126	1108.6757	2.6147	0.0014521	3.0122	0.0016728	5.6269	0.0031249	555.8484651386825	94.834	0.25896	94.834	94.69	94.949	0					7	5	2	0	0	0	0.027448	1	10336	10336		63.306	22.734	1	143500	+		16180	29518	13167	13188	18073	18073					0.12570891881932766
HLLILRQILSL	11	Unmodified	_HLLILRQILSL_					0	0	0		ENST00000524217.1_1_8:25298150-25301849:-|nuORF	ENST00000524217.1_1_8:25298150-25301849:-|nuORF	ENST00000524217.1_1_8:25298150-25301849:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	440.2908020019531	3	440.29049	1317.84964	1.9822	0.00087273	-4.3161	-0.0019004	-2.334	-0.0010276	440.28853407751586	61.967	0.75494	58.899	58.622	59.377	-3.0685					35	19	2	0	0	0	0.72507	1	2239	2239		14.694	6.2864	1	31475			16181	13164	13168	13189	18074	18074					0.20343052587418242
HLLKEGREK	9	Unmodified	_HLLKEGREK_					0	0	0		ENST00000530199.5_1_11:22848753-22850842:-|nuORF	ENST00000530199.5_1_11:22848753-22850842:-|nuORF	ENST00000530199.5_1_11:22848753-22850842:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	555.3284912109375	2	555.324922	1108.63529	2.5192	0.001399	3.1202	0.0017327	5.6393	0.0031317	555.3266204801115	94.98	4.6235	94.98	93.883	98.506	0					299	108	6	0	0	0	0.26076	1	10505	10505		67.494	11.989	1	31877000			16182	13285	13169	13190	18075	18075					0.08531925491524817
HLLKKLTSGI	10	Unmodified	_HLLKKLTSGI_					0	0	0			REV__ENSG00000188559|ENST00000202677|RALGAPA2	REV__ENSG00000188559|ENST00000202677|RALGAPA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.3290405273438	2	555.355691	1108.69683	2.5085	0.0013931	0.073419	4.0774E-05	2.5819	0.0014339	555.3558747740263	95.013	0.72375	95.013	94.56	95.284	0					18	16	2	0	0	0	0.028155	1	10312	10312		104.75	27.972	1	191950	+		16183	22718	13170	13191	18076	18076					0.14682857190791765
HLLKLYCPE	9	Unmodified	_HLLKLYCPE_					0	0	0		ENST00000399474.2_1_X:44335819-44336572:-|nuORF	ENST00000399474.2_1_X:44335819-44336572:-|nuORF	ENST00000399474.2_1_X:44335819-44336572:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.2996826171875	2	558.299527	1114.5845	1.3243	0.00073933	-1.5092	-0.0008426	-0.18497	-0.00010327	558.2984753972437	111.24	1.211	109.67	109.31	110.52	-1.5717					51	22	3	0	0	0	0.59983	1	10246	10246		31.955	1.4512	1	167610			16184	11391	13171	13192	18077	18077					0.03179260122283267
HLLKSETSV	9	Unmodified	_HLLKSETSV_					0	0	0		ENST00000490163.5_1_2:136511736-136527340:+|nuORF;ENSG00000144224|ENST00000272638|UBXN4	ENST00000490163.5_1_2:136511736-136527340:+|nuORF	ENST00000490163.5_1_2:136511736-136527340:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	507.28485107421875	2	507.284931	1012.55531	0.17578	8.9169E-05	-0.60168	-0.00030522	-0.42591	-0.00021606	507.2844960160978	46.29	1.9603	46.29	46.024	47.984	0					68	44	2	0	0	0	0.1804	1	3250	3250		79.713	10.926	1	3584700			16185	5135	13172	13193	18078	18078					0.04953439097664614
HLLLGGGPQGW	11	Unmodified	_HLLLGGGPQGW_					0	0	0		ENST00000369660.8_1_X:153712793-153712919:-|nuORF	ENST00000369660.8_1_X:153712793-153712919:-|nuORF	ENST00000369660.8_1_X:153712793-153712919:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	567.8059692382812	2	567.806365	1133.59818	0.37724	0.0002142	-0.65111	-0.0003697	-0.27387	-0.00015551	567.8060000872808	69.253	6.911	66.439	66.063	72.974	-2.8144					296	138	6	0	0	0	0.54764	1	3140	3140		49.442	3.4896	1	2051600			16186	10902	13173	13194	18079	18079					0.03672253945774173
HLLLLMFE	8	Oxidation (M)	_HLLLLM(Oxidation (M))FE_		HLLLLM(1)FE		HLLLLM(49)FE	0	0	1		ENSG00000269556|ENST00000600449|TMEM185A;ENST00000517359.1_1_X:148690238-148690502:-|nuORF;ENST00000502900.2_1_X:148688442-148693021:-|nuORF;ENSG00000226479|ENST00000426077|TMEM185B	ENSG00000269556|ENST00000600449|TMEM185A;ENSG00000226479|ENST00000426077|TMEM185B	ENSG00000269556|ENST00000600449|TMEM185A	MULTI-MSMS	OvCa9_classI_Rep2	2	516.284912109375	2	516.283346	1030.55214	-0.48899	-0.00025246	3.6881	0.0019041	3.1991	0.0016517	516.285153684191	57.372	1.6977	54.58	54.03	55.728	-2.792					82	33	3	0	0	0	0.67106	1	4117	4117		49.211	8.0024	1	519060			16187	9542;9271	13174	13195	18080	18080		275			0.03808472719310885
HLLLLQLRIK	10	Unmodified	_HLLLLQLRIK_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN	REV__ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OvCa9_classI_Rep2	2	623.9175415039062	2	623.921532	1245.82851	-5.6275	-0.0035111	-0.80944	-0.00050503	-6.4369	-0.0040161	623.9209249558969	163.4	0.91801	163.18	162.75	163.67	-0.22696					66	30	3	0	0	0	0.8892	1	16659	16659		7.6903	4.0059	1	62419	+		16188	20306	13175	13196	18081	18081					0.21543087278541861
HLLLPHLGIP	10	Unmodified	_HLLLPHLGIP_					0	0	0		ENST00000247020.8_1_17:26975873-26975987:-|nuORF	ENST00000247020.8_1_17:26975873-26975987:-|nuORF	ENST00000247020.8_1_17:26975873-26975987:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	555.3009033203125	2	555.345126	1108.6757	-0.43221	-0.00024002	-3.9888	-0.0022152	-4.421	-0.0024552	555.3430329256331	72.883	2.0323	70.396	69.984	72.016	-2.4873					99	40	3	0	0	0	0.026839	1	3612	3612		35.201	14.254	1	434580			16189	9780	13176	13197	18082	18082					0.12570891881932766
HLLLPHLGIP	10	Unmodified	_HLLLPHLGIP_					0	0	0		ENST00000247020.8_1_17:26975873-26975987:-|nuORF	ENST00000247020.8_1_17:26975873-26975987:-|nuORF	ENST00000247020.8_1_17:26975873-26975987:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	555.345126	1108.6757	0.66435	0.00036894	-4.9744	-0.0027625	-4.31	-0.0023936	555.3424087021177	72.789	1.778	70.389	69.697	71.475	-2.3999	-0.0033223	-0.00031423	NaN	26.796	93	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262960			16190	9780	13176	13197							0.12570891881932766
HLLLRKYR	8	Unmodified	_HLLLRKYR_					0	0	0		nc|ENSG00000185247|P43364-2|MAGEA11;ENST00000518694.1_1_X:148796119-148798433:+|nuORF;ENSG00000185247|ENST00000355220|MAGEA11	nc|ENSG00000185247|P43364-2|MAGEA11	nc|ENSG00000185247|P43364-2|MAGEA11	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.7828979492188	2	549.848368	1097.68218	-1.1917	-0.00065527	-0.31285	-0.00017202	-1.5046	-0.00082729	549.8480649650952	43.062	0.52493	40.055	39.906	40.431	-3.0074					20	9	3	0	0	0	0.028476	1	2042	2042		20.482	4.84	1	38403			16191	8238	13177	13198	18083	18083					0.1372482983331338
HLLNMLKQI	9	Unmodified	_HLLNMLKQI_					0	0	0			REV__tr|A0A553SLE9|A0A553SLE9_NIACIPutativecomponentof'biosyntheticmodule'domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20520PE=4SV=1	REV__tr|A0A553SLE9|A0A553SLE9_NIACIPutativecomponentof'biosyntheticmodule'domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20520PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	555.3291625976562	2	555.328619	1108.64269	2.5192	0.001399	-3.5368	-0.0019641	-1.0176	-0.00056511	555.3266204801115	94.98	4.6235	94.98	93.883	98.506	0					299	108	6	0	0	0	0.21395	1	10390	10390		73.975	8.1716	1	31877000	+		16192	30220	13178	13199	18084	18084					0.09270941767590557
HLLNREFF	8	Unmodified	_HLLNREFF_					0	0	0		L1PA7_dup282|chr1:88818677-88820142:+|1.0289078366989055|0.4624574098713206|1.15|428.0|87|3|anti-sense	L1PA7_dup282|chr1:88818677-88820142:+|1.0289078366989055|0.4624574098713206|1.15|428.0|87|3|anti-sense	L1PA7_dup282|chr1:88818677-88820142:+|1.0289078366989055|0.4624574098713206|1.15|428.0|87|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.303466796875	2	538.287808	1074.56106	-0.42691	-0.0002298	-3.5145	-0.0018918	-3.9414	-0.0021216	538.7861146964269	90.175	0.96337	87.6	87.248	88.212	-2.575					29	18	2	0	0	0	0.028476	1	7831	7831		17.365	0	1	31741			16193	14738	13179	13200	18085	18085					0.026765823999767235
HLLPLLLACFV	11	Unmodified	_HLLPLLLACFV_					0	0	0		nc|ENSG00000224586|O75715-2|GPX5;GPX5|p.F149Cfs*13|1|0.03|ENSG00000224586|chr6:28532406-28532407|-/G|frameshift_variant;ENSG00000224586|ENST00000412168|GPX5	nc|ENSG00000224586|O75715-2|GPX5	nc|ENSG00000224586|O75715-2|GPX5	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8692626953125	2	619.87012	1237.72569	-4.5563	-0.0028243	3.799	0.0023549	-0.75726	-0.0004694	619.8721468174133	154.73	0.91951	153.72	153.37	154.29	-1.0076					32	18	2	0	0	0	0.72486	2	13288	13288;13295		17.365	1.3582	1	39850			16194	9257	13180	13201	18086;18087	18086					0.11633258495567134
HLLPMGSIW	9	Unmodified	_HLLPMGSIW_					0	0	0		ENST00000375279.6_1_20:32233386-32233644:+|nuORF	ENST00000375279.6_1_20:32233386-32233644:+|nuORF	ENST00000375279.6_1_20:32233386-32233644:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.2977905273438	2	527.281137	1052.54772	1.488	0.00078457	-0.11855	-6.2509E-05	1.3694	0.00072206	527.2808710375301	90.218	1.0388	88.916	88.285	89.323	-1.302					28	20	2	0	0	0	0.027462	1	7903	7903		26.796	14.589	1	67127			16195	11055	13181	13202	18088	18088					0.02355008296399319
HLLPMGSIW	9	Unmodified	_HLLPMGSIW_					0	0	0		ENST00000375279.6_1_20:32233386-32233644:+|nuORF	ENST00000375279.6_1_20:32233386-32233644:+|nuORF	ENST00000375279.6_1_20:32233386-32233644:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	527.281137	1052.54772	-1.121	-0.00059108	2.4469	0.0012902	1.3259	0.00069915	527.2823017119855	91.328	1.0632	88.786	88.657	89.72	-2.5425	-0.06524	0.001132	NaN	26.796	26	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80667			16196	11055	13181	13202							0.02355008296399319
HLLPPERR	8	Unmodified	_HLLPPERR_					0	0	0			REV__ENST00000538790.1_1_12:122501364-122505979:+|nuORF	REV__ENST00000538790.1_1_12:122501364-122505979:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	509.3016662597656	2	509.30125	1016.58795	-0.34966	-0.00017808	-0.37762	-0.00019232	-0.72728	-0.0003704	509.30096331364155	58.953	0.7347	58.953	58.53	59.265	0					40	18	3	0	0	0	0.6962	1	5054	5054		44.117	5.3107	1	2153400	+		16197	27327	13182	13203	18089	18089					0.08031691011171915
HLLPSNEKL	9	Unmodified	_HLLPSNEKL_					0	0	0			REV__JMJD1C-CTNNA3|1|fusion	REV__JMJD1C-CTNNA3|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.802490234375	2	525.800749	1049.58694	-1.3591	-0.00071462	4.1778	0.0021967	2.8187	0.0014821	525.802905054093	80.787	2.8213	78.077	77.665	80.486	-2.7106					170	57	5	0	0	0	0.18193	1	6689	6689		79.451	8.6348	1	4284200	+		16198	22350	13183	13204	18090	18090					0.06413431851615314
HLLQQQEP	8	Unmodified	_HLLQQQEP_					0	0	0			REV__tr|A0A553SMQ4|A0A553SMQ4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_22895PE=4SV=1	REV__tr|A0A553SMQ4|A0A553SMQ4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_22895PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.3026428222656	2	496.761623	991.508694	1.8149	0.00090159	4.2818	0.002127	6.0967	0.0030286	496.76352327127717	91.468	1.5977	91.468	90.577	92.174	0					56	38	3	0	0	0	0.028476	1	9932	9932		28.254	0	1	784610	+		16199	30360	13184	13205	18091	18091					0.012599992663808735
HLLRIKARQ	9	Unmodified	_HLLRIKARQ_					0	0	0			REV__ENSG00000066279|ENST00000367409|ASPM	REV__ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	OvCa9_classI_Rep2	2	567.8477172851562	2	567.864549	1133.71454	0.18126	0.00010293	4.05	0.0022999	4.2313	0.0024028	567.867372197599	71.759	0.25932	69.252	69.121	69.381	-2.5071					5	4	2	0	0	0	0.027462	1	5775	5775		31.955	15.482	1	11038	+		16200	16812	13185	13206	18092	18092					0.1530361723630449
HLLRLNVKM	9	Unmodified	_HLLRLNVKM_					0	0	0			REV__L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|377|3|anti-sense	REV__L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|377|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3436279296875	2	562.342061	1122.66957	1.2434	0.00069921	1.201	0.00067537	2.4444	0.0013746	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.65476	2	14034	14034;14188		25.45	6.8378	1	683710	+		16201	28536	13186	13207	18093;18094	18093					0.11314050378769025
HLLRLRASTAG	11	Unmodified	_HLLRLRASTAG_					0	0	0			REV__ENST00000259512.8_1_8:124054449-124054536:-|nuORF	REV__ENST00000259512.8_1_8:124054449-124054536:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8563232421875	2	597.856921	1193.69929	-0.38237	-0.0002286	-0.55263	-0.00033039	-0.935	-0.00055899	597.8564103488146	145.14	4.0194	143.71	141.51	145.53	-1.4357					229	77	4	0	0	0	0.68399	1	14066	14066		35.152	15.792	1	217250	+		16202	23919	13187	13208	18095	18095					0.11018705648439209
HLLTSAPALT	10	Unmodified	_HLLTSAPALT_					0	0	0			REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|62|2|sense	REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|62|2|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	512.2490844726562	2	512.295299	1022.57605	-2.2386	-0.0011468	-0.64798	-0.00033196	-2.8866	-0.0014788	512.2948071242828	35.58	1.2418	32.87	32.553	33.795	-2.7097					39	24	3	0	0	0	0.027021	1	1488	1488		29.15	17.639	1	48785	+		16203	28472	13188	13209	18096	18096					0.0656602947731244
HLLVAMVQCP	10	Unmodified	_HLLVAMVQCP_					0	0	0			REV__ENSG00000111452|ENST00000261654|ADGRD1	REV__ENSG00000111452|ENST00000261654|ADGRD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.7931518554688	2	555.793555	1109.57256	-0.25492	-0.00014168	-0.68848	-0.00038265	-0.9434	-0.00052433	555.793119473527	46.113	1.1898	43.04	42.824	44.014	-3.0724					62	22	4	0	0	0	0.50656	1	2416	2416		53.351	0.41475	1	475930	+		16204	18035	13189	13210	18097	18097					0.022153201074388562
HLLWPRQEL	9	Unmodified	_HLLWPRQEL_					0	0	0		nc|ENSG00000204396|Q9Y334-2|VWA7;ENSG00000204396|ENST00000375688|VWA7	nc|ENSG00000204396|Q9Y334-2|VWA7	nc|ENSG00000204396|Q9Y334-2|VWA7	MULTI-MSMS	OvCa99_classI_Rep5	1	596.33544921875	2	596.33529	1190.65603	1.6817	0.0010029	-1.1793	-0.00070328	0.50237	0.00029958	596.3345114351026	112.16	0.59659	112.16	111.93	112.52	0					32	12	3	0	0	0	0.24951	1	12763	12763		68.787	2.9837	1	515550			16205	8981	13190	13211	18098	18098					0.06832515871178657
HLNGVVSKL	9	Unmodified	_HLNGVVSKL_					0	0	0			REV__nc|ENSG00000111641|P46087-4|NOP2	REV__nc|ENSG00000111641|P46087-4|NOP2	MULTI-MSMS	OvCa99_classI_Rep5	1	483.7923278808594	2	483.790184	965.565815	-0.79709	-0.00038563	-0.0027441	-1.3276E-06	-0.79984	-0.00038695	483.7902074509702	50.014	4.0099	50.014	49.723	53.733	0					174	92	5	0	0	0	0.27001	1	3949	3949		66.429	3.123	1	48940000	+		16206	28796	13191	13212	18099	18099					0.08165466542754984
HLNKAKILVV	10	Unmodified	_HLNKAKILVV_					0	0	0			REV__ENSG00000019505|ENST00000020926|SYT13	REV__ENSG00000019505|ENST00000020926|SYT13	MULTI-SECPEP	OvCa9_classI_Rep2	2	567.8464965820312	2	567.871508	1133.72846	0.27213	0.00015453	-4.374	-0.0024839	-4.1019	-0.0023293	567.8691300857711	71.549	0.21089	69.042	68.858	69.068	-2.5071					5	3	2	0	0	0	0.027204	1	5755	5755		17.365	2.5001	1	15735	+		16207	16536	13192	13213	18100	18100					0.1669484994472441
HLNKVKHEN	9	Unmodified	_HLNKVKHEN_					0	0	0			REV__ENSG00000164291|ENST00000380009|ARSK	REV__ENSG00000164291|ENST00000380009|ARSK	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.251953125	2	559.806897	1117.59924	1.4605	0.0008176	1.2581	0.00070429	2.7186	0.0015219	559.8060616063194	67.137	0.24692	63.647	63.442	63.689	-3.4902					6	4	2	0	0	0	0.027462	1	4916	4916		26.693	17.871	1	12258	+		16208	20966	13193	13214	18101	18101					0.04514468314664555
HLNLNRLTN	9	Unmodified	_HLNLNRLTN_					0	0	0			REV__nc|ENSG00000121897|O43766-2|LIAS	REV__nc|ENSG00000121897|O43766-2|LIAS	MULTI-MSMS	OvCa9_classI_Rep2	2	547.8080444335938	2	547.806897	1093.59924	-0.63287	-0.00034669	4.1528	0.0022749	3.52	0.0019283	547.8089203979869	48.592	1.4896	45.831	45.28	46.769	-2.7603					73	29	4	0	0	0	0.56889	1	3030	3030		35.618	6.4687	1	224700	+		16209	18564	13194	13215	18102	18102					0.05618468314673919
HLNLVGGIIL	10	Unmodified	_HLNLVGGIIL_					0	0	0		tr|A0A7D6ZS13|A0A7D6ZS13_9CLOTYjbEfamilyputativemetaltransportproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14270PE=3SV=1	tr|A0A7D6ZS13|A0A7D6ZS13_9CLOTYjbEfamilyputativemetaltransportproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14270PE=3SV=1	tr|A0A7D6ZS13|A0A7D6ZS13_9CLOTYjbEfamilyputativemetaltransportproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14270PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.8270263671875	2	524.829309	1047.64407	-5.767	-0.0030267	1.6173	0.0008488	-4.1497	-0.0021779	524.8300427930473	156.94	1.6972	155.39	155.01	156.7	-1.545					136	47	6	0	0	0	0.75594	1	15570	15570		24.203	0	1	1010500			16210	35729	13195	13216	18103	18103					0.12214899128002799
HLNNQMLVL	9	Unmodified	_HLNNQMLVL_					0	0	0		ENST00000374875.5_1_10:33468482-33468866:-|nuORF	ENST00000374875.5_1_10:33468482-33468866:-|nuORF	ENST00000374875.5_1_10:33468482-33468866:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	541.294189453125	2	541.294776	1080.575	2.209	0.0011957	-2.392	-0.0012948	-0.18296	-9.9038E-05	541.2932408141581	95.187	0.80501	95.187	94.69	95.495	0					40	18	3	0	0	0	0.42057	1	10381	10381		50.025	0	1	1510500			16211	11044	13196	13217	18104	18104					0.03793491836790963
HLNRQKLGE	9	Unmodified	_HLNRQKLGE_					0	0	0			REV__ENSG00000154269|ENST00000357639|ENPP3	REV__ENSG00000154269|ENST00000357639|ENPP3	MULTI-MSMS	OvCa9_classI_Rep2	2	547.8084106445312	2	547.806897	1093.59924	-0.63287	-0.00034669	4.1528	0.0022749	3.52	0.0019283	547.8089203979869	48.592	1.4896	45.831	45.28	46.769	-2.7603					73	29	4	0	0	0	0.55588	1	3024	3024		37.159	0	1	224700	+		16212	20375	13197	13218	18105	18105					0.05618468314673919
HLNSHVRQV	9	Unmodified	_HLNSHVRQV_					0	0	0		nc|ENSG00000103495|P56270-3|MAZ;ENSG00000103495|ENST00000322945|MAZ;nc|ENSG00000103495|P56270-2|MAZ	nc|ENSG00000103495|P56270-3|MAZ	nc|ENSG00000103495|P56270-3|MAZ	MULTI-MSMS	OvCa99_classI_Rep5	1	545.298583984375	2	545.299239	1088.58392	-0.015979	-8.7135E-06	-0.941	-0.00051313	-0.95698	-0.00052184	545.2987163896643	31.534	1.0279	31.534	31.027	32.055	0					37	20	4	0	0	0	0.17606	1	1302	1302		80.455	23.734	1	426030			16213	2322	13198	13219	18106	18106					0.043176015174594795
HLPALEASI	9	Unmodified	_HLPALEASI_					0	0	0		ENST00000355552.7_2_3:127295839-127309587:-|nuORF	ENST00000355552.7_2_3:127295839-127309587:-|nuORF	ENST00000355552.7_2_3:127295839-127309587:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.3143615722656	2	475.768917	949.523281	2.9785	0.0014171	-0.30502	-0.00014512	2.6734	0.0012719	475.7686517738261	90.053	0.46219	90.053	89.848	90.31	0					18	10	2	0	0	0	0.027462	1	9622	9622		37.159	12.956	1	360500			16214	10679	13199	13220	18107	18107					0.04650071414528156
HLPDFVKQL	9	Unmodified	_HLPDFVKQL_					0	0	0		ENSG00000135837|ENST00000367607|CEP350;CEP350|p.M1638Ifs*15|1|0.05|ENSG00000135837|chr1:180053090-180053091|-/ATGGCATAACAACATTGAA|frameshift_variant	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MULTI-MSMS	OvCa99_classI_Rep5	1	548.8126220703125	2	548.811116	1095.60768	1.3751	0.00075465	1.1961	0.00065643	2.5712	0.0014111	548.811543881311	93.487	1.8556	93.487	93.093	94.949	0					107	43	4	0	0	0	0.055627	3	10145	10117;10145;10175		115.49	43.617	1	6081200			16215	4421	13200	13221	18108;18109;18110	18109					0.0637002223129457
HLPDQEQL	8	Unmodified	_HLPDQEQL_					0	0	0		nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3	nc|ENSG00000139734|Q9NSV4-2|DIAPH3	nc|ENSG00000139734|Q9NSV4-2|DIAPH3	MULTI-MSMS	OvCa9_classI_Rep4_	4	491.2495422363281	2	490.245806	978.47706	-0.21003	-0.00010296	-1.5886	-0.00077879	-1.7986	-0.00088175	490.2450385240117	63.057	3.0011	59.582	59.044	62.045	-3.475					145	61	4	0	0	0	0.71267	1	4378	4378		40.778	2.9666	1	4610600			16216	4802	13201	13222	18111	18111					-0.013039934875678227
HLPFDVLTF	9	Unmodified	_HLPFDVLTF_					0	0	0			REV__nc|ENSG00000110514|Q8WXG6-6|MADD	REV__nc|ENSG00000110514|Q8WXG6-6|MADD	MULTI-MSMS	OvCa9_classI_Rep2	2	544.7908325195312	2	544.792392	1087.57023	-0.71187	-0.00038782	-0.048801	-2.6586E-05	-0.76067	-0.00041441	544.79222686285	32.37	1.6392	29.661	29.382	31.021	-2.7097					66	32	3	0	0	0	0.27546	1	1103	1103		65.803	26.55	1	151030	+		16217	17989	13202	13223	18112	18112					0.029949309656331025
HLPGLEDLGI	10	Unmodified	_HLPGLEDLGI_					0	0	0		ENSG00000139180|ENST00000266544|NDUFA9	ENSG00000139180|ENST00000266544|NDUFA9	ENSG00000139180|ENST00000266544|NDUFA9	MULTI-MSMS	OvCa9_classI_Rep3	3	532.292724609375	2	532.292756	1062.57096	-0.85419	-0.00045468	1.1425	0.00060814	0.28831	0.00015346	532.2931881393284	93.365	1.0607	91.403	91.128	92.189	-1.9617					53	20	4	0	0	0	0.49049	1	5977	5977		55.504	0.78186	1	553100			16218	4753	13203	13224	18113	18113					0.04217725614716983
HLPKSGVIRGN	11	Unmodified	_HLPKSGVIRGN_					0	0	0			REV__nc|ENSG00000174740|Q96DU9-2|PABPC5	REV__nc|ENSG00000174740|Q96DU9-2|PABPC5	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3428955078125	2	589.343646	1176.67274	-4.3129	-0.0025418	3.0093	0.0017735	-1.3036	-0.00076827	589.3453728975387	144.79	3.9151	143.81	141.71	145.63	-0.97299					242	78	5	0	0	0	0.70865	1	12009	12009		26.693	3.6504	1	192050	+		16219	21850	13204	13225	18114	18114					0.09147016757174242
HLPLGHAESQY	11	Unmodified	_HLPLGHAESQY_					0	0	0			REV__ENSG00000105550|ENST00000593756|FGF21	REV__ENSG00000105550|ENST00000593756|FGF21	MULTI-SECPEP	OvCa9_classI_Rep4_	4	626.3536376953125	2	626.309469	1250.60439	-0.42242	-0.00026456	3.1415	0.0019676	2.7191	0.001703	626.3113957014747	51.472	1.6644	48.298	47.821	49.486	-3.1734					99	32	5	0	0	0	0.025265	1	3040	3040		35.152	0	1	1010000	+		16220	17735	13205	13226	18115	18115					-0.010892726133761244
HLPLPFGKFC	10	Unmodified	_HLPLPFGKFC_					0	0	0			REV__MSX2|p.V252Dfs*60|1|0.05|ENSG00000120149|chr5:174729533-174729534|-/A|frameshift_variant	REV__MSX2|p.V252Dfs*60|1|0.05|ENSG00000120149|chr5:174729533-174729534|-/A|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	579.8120727539062	2	579.810062	1157.60557	1.7048	0.00098846	-0.60012	-0.00034796	1.1047	0.00064051	579.8098368511306	90.554	1.1432	90.554	90.228	91.372	0					40	27	2	0	0	0	0.56767	1	9704	9704		45.952	5.8938	1	3000600	+		16221	28683	13206	13227	18116	18116					0.033072702218305494
HLPNIVPPAG	10	Unmodified	_HLPNIVPPAG_					0	0	0			REV__ENSG00000137103|ENST00000643932|TMEM8B	REV__ENSG00000137103|ENST00000643932|TMEM8B	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7878723144531	2	507.790184	1013.56581	-0.71965	-0.00036543	-3.7944	-0.0019267	-4.514	-0.0022922	507.78818211844305	46.857	1.6349	44.147	43.646	45.281	-2.7097					89	32	4	0	0	0	0.71192	1	2837	2837		29.15	0	1	755080	+		16222	19435	13207	13228	18117	18117					0.059574665427589935
HLPRTACPLS	10	Unmodified	_HLPRTACPLS_					0	0	0		ENST00000204961.4_1_X:68060721-68060937:+|nuORF	ENST00000204961.4_1_X:68060721-68060937:+|nuORF	ENST00000204961.4_1_X:68060721-68060937:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.8372192382812	2	547.792401	1093.57025	-0.55227	-0.00030253	-2.2495	-0.0012323	-2.8018	-0.0015348	548.2927518777796	55.753	0.65331	55.753	55.44	56.094	0					27	15	2	0	0	0	0.026635	1	4607	4607		47.657	7.0847	1	724970			16223	9653	13208	13229	18118	18118					0.02720607694004684
HLPVIETLS	9	Unmodified	_HLPVIETLS_					0	0	0		nc|ENSG00000134215|Q9UKW4-2|VAV3;ENST00000343258.8_1_1:108115955-108328118:-|nuORF	nc|ENSG00000134215|Q9UKW4-2|VAV3	nc|ENSG00000134215|Q9UKW4-2|VAV3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.3121032714844	2	504.78985	1007.56515	-0.58519	-0.0002954	0.58582	0.00029571	0.00062649	3.1625E-07	504.7894919501314	83.269	1.1201	80.606	80.145	81.265	-2.6629					30	22	2	0	0	0	0.027462	1	6917	6917		40.573	15.122	1	25351			16224	10595	13209	13230	18119	18119					0.06166627103061728
HLPVIETLS	9	Unmodified	_HLPVIETLS_					0	0	0		nc|ENSG00000134215|Q9UKW4-2|VAV3;ENST00000343258.8_1_1:108115955-108328118:-|nuORF	nc|ENSG00000134215|Q9UKW4-2|VAV3	nc|ENSG00000134215|Q9UKW4-2|VAV3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	504.78985	1007.56515	0.010429	5.2644E-06	-0.17042	-8.6024E-05	-0.15999	-8.0759E-05	504.7892133664273	82.411	0.83358	80.812	80.177	81.01	-1.5988	0.10277	-0.00034249	NaN	31.955	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20509			16225	10595	13209	13230							0.06166627103061728
HLQKYFFL	8	Unmodified	_HLQKYFFL_					0	0	0		CAPN3|p.D523Y|1|0.11|ENSG00000092529|chr15:42402824-42402824|G/T|missense_variant	CAPN3|p.D523Y|1|0.11|ENSG00000092529|chr15:42402824-42402824|G/T|missense_variant	CAPN3|p.D523Y|1|0.11|ENSG00000092529|chr15:42402824-42402824|G/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	547.81494140625	2	548.302927	1094.5913	-0.31039	-0.00017019	-0.06867	-3.7652E-05	-0.37906	-0.00020784	548.3027817907603	72.297	0.94225	69.695	69.424	70.366	-2.6023					31	18	2	0	0	0	0.028476	1	3453	3453		21.702	0	1	210040			16226	183	13210	13231	18120	18120					0.04778941065183062
HLQQLLYPI	9	Unmodified	_HLQQLLYPI_					0	0	0			REV__ENST00000459881.1_1_3:170784284-170789158:-|nuORF	REV__ENST00000459881.1_1_3:170784284-170789158:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.3115844726562	2	562.826766	1123.63898	2.9259	0.0016468	-1.5103	-0.00085006	1.4156	0.00079673	562.8261405027365	95.994	0.72196	95.994	95.656	96.378	0					27	16	2	0	0	0	0.027462	1	10531	10531		33.516	0	1	892920	+		16227	26069	13211	13232	18121	18121					0.08210595265359188
HLRAAIAAVL	10	Unmodified	_HLRAAIAAVL_					0	0	0		RAB11FIP1|p.T38Hfs*90|1|0.67|ENSG00000156675|chr8:37899331-37899332|-/C|frameshift_variant	RAB11FIP1|p.T38Hfs*90|1|0.67|ENSG00000156675|chr8:37899331-37899332|-/C|frameshift_variant	RAB11FIP1|p.T38Hfs*90|1|0.67|ENSG00000156675|chr8:37899331-37899332|-/C|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.7547607421875	2	517.827101	1033.63965	0.31853	0.00016494	-0.89312	-0.00046248	-0.57459	-0.00029754	517.8265865702375	98.965	1.0813	97.28	96.956	98.038	-1.685					41	20	3	0	0	0	0.026639	1	6708	6708		44.117	13.613	1	133130			16228	15535	13212	13233	18122	18122					0.12417434705071173
HLRAAIAAVL	10	Unmodified	_HLRAAIAAVL_					0	0	0		RAB11FIP1|p.T38Hfs*90|1|0.67|ENSG00000156675|chr8:37899331-37899332|-/C|frameshift_variant	RAB11FIP1|p.T38Hfs*90|1|0.67|ENSG00000156675|chr8:37899331-37899332|-/C|frameshift_variant	RAB11FIP1|p.T38Hfs*90|1|0.67|ENSG00000156675|chr8:37899331-37899332|-/C|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	517.827101	1033.63965	-0.013921	-7.2089E-06	-0.68184	-0.00035308	-0.69576	-0.00036029	517.8266985919778	98.038	0.88161	97.145	96.826	97.707	-0.89306	-0.03978	-0.00025501	NaN	44.117	43	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116860			16229	15535	13212	13233							0.12417434705071173
HLREYQDLL	9	Unmodified	_HLREYQDLL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|2|fusion;ENSG00000148798|ENST00000369849|INA;PPFIBP1-VIM|1|fusion;nc|ENSG00000104722|P07197-2|NEFM;ENSG00000104722|ENST00000221166|NEFM;ENSG00000175084|ENST00000373960|DES	ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|1|fusion;nc|ENSG00000104722|P07197-2|NEFM;ENSG00000175084|ENST00000373960|DES	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa99_classI_Rep5	1	593.8159790039062	2	593.814387	1185.61422	1.5039	0.00089301	0.30577	0.00018157	1.8096	0.0010746	593.8145077526559	79.139	1.8288	79.139	78.83	80.659	0					125	44	5	0	0	0	0.060996	3	8062	8034;8062;8092		112.41	24.714	1	24225000			16230	1049;15514;7513;2387	13213	13234	18123;18124;18125	18124					0.028839153919989258
HLREYQDLL	9	Unmodified	_HLREYQDLL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|2|fusion;ENSG00000148798|ENST00000369849|INA;PPFIBP1-VIM|1|fusion;nc|ENSG00000104722|P07197-2|NEFM;ENSG00000104722|ENST00000221166|NEFM;ENSG00000175084|ENST00000373960|DES	ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|1|fusion;nc|ENSG00000104722|P07197-2|NEFM;ENSG00000175084|ENST00000373960|DES	ENSG00000026025|ENST00000544301|VIM	MULTI-MATCH	OvCa9_classI_Rep3	3		2	593.814387	1185.61422	-0.59173	-0.00035138	-5.8666	-0.0034837	-6.4583	-0.0038351	593.8092702209495	81.82	0.75578	79.506	79.164	79.92	-2.3145	0.18324	-0.0072339	NaN	112.41	17	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26487			16231	1049;15514;7513;2387	13213	13234							0.028839153919989258
HLRGQRND	8	Unmodified	_HLRGQRND_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.P2471Lfs*35|1|0.08|ENSG00000118058|chr11:118503312-118503312|C/-|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.2977600097656	2	498.260114	994.505674	-0.408	-0.00020329	3.1269	0.001558	2.7189	0.0013547	498.2617799891226	73.194	0.52475	73.194	72.954	73.479	0					22	12	3	0	0	0	0.028476	1	7187	7187		42.396	5.237	1	270000			16232	3286	13214	13235	18126	18126					0.008201689322277161
HLRGQRND	8	Unmodified	_HLRGQRND_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.P2471Lfs*35|1|0.08|ENSG00000118058|chr11:118503312-118503312|C/-|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	498.260114	994.505674	-0.68146	-0.00033954	5.4097	0.0026955	4.7283	0.0023559	498.26156056406444	74.808	1.4579	72.836	72.114	73.572	-1.9711	-0.074513	0.0030888	NaN	42.396	70	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61182			16233	3286	13214	13235							0.008201689322277161
HLRGQRND	8	Unmodified	_HLRGQRND_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.P2471Lfs*35|1|0.08|ENSG00000118058|chr11:118503312-118503312|C/-|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	498.260114	994.505674	-0.057317	-2.8559E-05	1.8596	0.00092659	1.8023	0.00089803	498.2608931244296	75.641	0.86923	72.702	72.401	73.27	-2.9389	-0.20856	-0.0004489	NaN	42.396	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222530			16234	3286	13214	13235							0.008201689322277161
HLRKELFILL	10	Unmodified	_HLRKELFILL_					0	0	0			REV__ENST00000527039.1_1_11:209766-212514:+|nuORF	REV__ENST00000527039.1_1_11:209766-212514:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	426.9427490234375	3	427.939569	1280.79688	0.56267	0.00024079	-3.1634	-0.0013538	-2.6007	-0.001113	427.9381544349848	79.144	0.84626	76.804	76.514	77.36	-2.3399					25	16	3	0	0	0	0.027145	1	4281	4281		24.519	2.8334	1	39228	+		16235	22034	13215	13236	18127	18127					0.16771094524619912
HLRKELFILL	10	Unmodified	_HLRKELFILL_					0	0	0			REV__ENST00000527039.1_1_11:209766-212514:+|nuORF	REV__ENST00000527039.1_1_11:209766-212514:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	427.939569	1280.79688	-0.33084	-0.00014158	-1.9836	-0.00084884	-2.3144	-0.00099042	427.9384934388729	78.321	0.50567	76.581	76.301	76.807	-1.7398	-0.076129	0.001069	NaN	24.519	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17317	+		16236	22034	13215	13236							0.16771094524619912
HLRKELFILL	10	Unmodified	_HLRKELFILL_					0	0	0			REV__ENST00000527039.1_1_11:209766-212514:+|nuORF	REV__ENST00000527039.1_1_11:209766-212514:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	427.939569	1280.79688	0.23116	9.8925E-05	-3.6267	-0.001552	-3.3955	-0.0014531	427.93782839986955	79.338	0.56932	76.586	76.274	76.844	-2.7514	-0.070791	-0.0010405	NaN	24.519	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22885	+		16237	22034	13215	13236							0.16771094524619912
HLRLHRHNRLL	11	Unmodified	_HLRLHRHNRLL_					0	0	0			REV__chr10:103585356-103589514|104|23.06|0.33|6.11|+|1|None,NEURL1|1	REV__chr10:103585356-103589514|104|23.06|0.33|6.11|+|1|None,NEURL1|1	MULTI-MSMS	OvCa99_classI_Rep5	1	488.9618835449219	3	488.963882	1463.86982	-0.44087	-0.00021557	-2.58	-0.0012615	-3.0209	-0.0014771	488.9625906132698	23.522	0.30062	23.522	23.397	23.697	0					9	5	2	0	0	0	0.72573	1	344	344		6.001	0	1	37888	+		16238	15841	13216	13237	18128	18128					0.1564366109059847
HLRLPGHHV	9	Unmodified	_HLRLPGHHV_					0	0	0		ENST00000476095.5_1_3:47048649-47049645:+|nuORF	ENST00000476095.5_1_3:47048649-47049645:+|nuORF	ENST00000476095.5_1_3:47048649-47049645:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.2777099609375	2	533.306867	1064.59918	0.31037	0.00016552	-1.5777	-0.00084142	-1.2674	-0.0006759	533.3058235553824	85.126	1.8627	82.48	81.978	83.841	-2.6463					75	37	3	0	0	0	0.027462	1	7270	7270		35.201	10.998	1	47859			16239	12460	13217	13238	18129	18129					0.06946513105322083
HLRLPGHHV	9	Unmodified	_HLRLPGHHV_					0	0	0		ENST00000476095.5_1_3:47048649-47049645:+|nuORF	ENST00000476095.5_1_3:47048649-47049645:+|nuORF	ENST00000476095.5_1_3:47048649-47049645:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	533.306867	1064.59918	-0.52787	-0.00028151	-2.2133	-0.0011804	-2.7411	-0.0014619	533.305518557247	84.776	1.6774	82.515	82.067	83.744	-2.261	0.017653	-0.00015183	NaN	33.516	70	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60814			16240	12460	13217	13238							0.06946513105322083
HLRQADLH	8	Unmodified	_HLRQADLH_					0	0	0			REV__nc|ENSG00000204574|Q8NE71-2|ABCF1	REV__nc|ENSG00000204574|Q8NE71-2|ABCF1	MULTI-MSMS	OvCa99_classI_Rep5	1	495.2673034667969	2	495.267407	988.520262	-1.0841	-0.00053691	0.60362	0.00029895	-0.48047	-0.00023796	495.26752908664025	27.267	0.59861	27.267	27.092	27.691	0					28	11	4	0	0	0	0.65582	1	788	788		52.299	0	1	442030	+		16241	23169	13218	13239	18130	18130					0.025542410803609528
HLRQRRHHRRW	11	Unmodified	_HLRQRRHHRRW_					0	0	0		ENSG00000132716|ENST00000368074|DCAF8	ENSG00000132716|ENST00000368074|DCAF8	ENSG00000132716|ENST00000368074|DCAF8	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.630859375	3	546.645546	1636.91481	2.1954	0.0012001	-0.40684	-0.0002224	1.7886	0.00097771	546.6453050280695	86.094	0.12015	86.094	86.033	86.153	0					4	2	2	0	0	0	0.026553	1	9064	9064		1.3219	0.95051	1	162390			16242	4168	13219	13240	18131	18131					0.12182904676478756
HLRRLGTFLV	10	Unmodified	_HLRRLGTFLV_					0	0	0			REV__ENST00000483792.1_1_6:31695419-31697893:-|nuORF	REV__ENST00000483792.1_1_6:31695419-31697893:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3696899414062	2	606.372207	1210.72986	-3.14	-0.001904	-1.1627	-0.00070505	-4.3027	-0.0026091	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.76627	1	14980	14980		23.042	1.0826	1	257720	+		16243	26539	13220	13241	18132	18132					0.13292484033490837
HLRSGVRHQP	10	Unmodified	_HLRSGVRHQP_					0	0	0		chr17:81953267-81953858|172|18.93|0.24|6.28|-|0|TE_info:AluSq2,AluSq2_dup53237,Alu,SINE,donor,-,81953858,81954077|NOTUM,None|2	chr17:81953267-81953858|172|18.93|0.24|6.28|-|0|TE_info:AluSq2,AluSq2_dup53237,Alu,SINE,donor,-,81953858,81954077|NOTUM,None|2	chr17:81953267-81953858|172|18.93|0.24|6.28|-|0|TE_info:AluSq2,AluSq2_dup53237,Alu,SINE,donor,-,81953858,81954077|NOTUM,None|2	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.3145141601562	2	593.831237	1185.64792	2.4673	0.0014652	1.0605	0.00062978	3.5279	0.002095	593.8319218853544	80.221	0.49955	80.221	79.944	80.443	0					20	11	2	0	0	0	0.026551	1	8185	8185		60.118	29.615	1	294560			16244	396	13221	13242	18133	18133					0.06252381674426033
HLRYRERFLRR	11	Unmodified	_HLRYRERFLRR_					0	0	0			REV__ENSG00000184292|ENST00000371225|TACSTD2	REV__ENSG00000184292|ENST00000371225|TACSTD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.2930297851562	3	534.646442	1600.9175	3.2116	0.0017171	0.66743	0.00035684	3.879	0.0020739	534.647175796954	97.698	0.38383	97.698	97.611	97.995	0					12	8	2	0	0	0	0.026488	1	10771	10771		3.4087	0.19739	1	157710	+		16245	22419	13222	13243	18134	18134					0.14107315290766564
HLSELLKCL	9	Unmodified	_HLSELLKCL_					0	0	0		ENST00000306107.9_3_3:105085858-105238971:+|nuORF	ENST00000306107.9_3_3:105085858-105238971:+|nuORF	ENST00000306107.9_3_3:105085858-105238971:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.2781982421875	2	528.299527	1054.5845	-0.78318	-0.00041375	3.83	0.0020234	3.0469	0.0016097	528.3012519765156	46.249	0.44553	43.54	43.399	43.844	-2.7097					15	8	2	0	0	0	0.027462	1	2765	2765		38.806	3.1879	1	29719			16246	10241	13223	13244	18135	18135					0.05939260122318046
HLSELNTKL	9	Unmodified	_HLSELNTKL_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	OvCa99_classI_Rep5	1	527.801513671875	2	527.798206	1053.58186	-0.63146	-0.00033329	-0.45939	-0.00024247	-1.0909	-0.00057575	527.7978044014045	61.382	1.6894	61.382	60.646	62.335	0					81	39	3	0	0	0	0.083631	1	5399	5399		101.6	8.4052	1	2520200			16247	5173	13224	13245	18136	18136					0.05721127988999797
HLSIINEYL	9	Unmodified	_HLSIINEYL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	551.3026123046875	2	551.300581	1100.58661	1.4681	0.00080935	0.7657	0.00042213	2.2338	0.0012315	551.3008705568828	115.15	3.1895	115.15	114.7	117.88	0					161	68	5	0	0	0	0.19758	1	13155	13155		76.774	5.4784	1	1919600			16248	4862	13225	13246	18137	18137					0.04034012131751297
HLSIINEYL	9	Unmodified	_HLSIINEYL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	551.300581	1100.58661	0.39254	0.0002164	4.0841	0.0022516	4.4767	0.002468	551.8048388032884	114.99	1.4309	114.87	114.06	115.49	-0.11777	0.067296	0.003212	NaN	76.774	39	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16653			16249	4862	13225	13246							0.04034012131751297
HLSIINEYL	9	Unmodified	_HLSIINEYL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	551.300581	1100.58661	-0.90147	-0.00049698	5.8182	0.0032076	4.9167	0.0027106	551.805299183807	115.69	1.283	114.65	114.16	115.44	-1.0414	-0.15717	0.005124	NaN	76.774	36	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14619			16250	4862	13225	13246							0.04034012131751297
HLSIINEYL	9	Unmodified	_HLSIINEYL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	551.300581	1100.58661	0.069478	3.8303E-05	3.986	0.0021975	4.0555	0.0022358	551.8048981072702	115.93	1.1958	114.55	114.1	115.29	-1.3715	-0.2508	0.0031039	NaN	76.774	38	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15586			16251	4862	13225	13246							0.04034012131751297
HLSKVPEKL	9	Unmodified	_HLSKVPEKL_					0	0	0		nc|ENSG00000115266|O95996-2|APC2;nc|ENSG00000115266|O95996-3|APC2;ENSG00000115266|ENST00000590469|APC2	nc|ENSG00000115266|O95996-2|APC2	nc|ENSG00000115266|O95996-2|APC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.802490234375	2	525.818941	1049.62333	-1.3696	-0.00072014	-0.2512	-0.00013209	-1.6208	-0.00085223	525.8187229138941	81.111	1.1752	78.4	77.858	79.033	-2.7106					40	23	2	0	0	0	0.027295	1	6689	6689		74.255	5.4682	1	74163			16252	3076	13226	13247	18138	18138					0.10050308748327552
HLSLRLASP	9	Unmodified	_HLSLRLASP_					0	0	0			REV__ENST00000538079.1_1_12:6887244-6887553:+|nuORF	REV__ENST00000538079.1_1_12:6887244-6887553:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	497.2977600097656	2	497.295633	992.576714	-0.20094	-9.9925E-05	-0.53731	-0.0002672	-0.73824	-0.00036713	497.2953496050976	72.998	1.4906	72.998	72.723	74.214	0					105	37	5	0	0	0	0.38969	1	7187	7187		52.937	5.2794	1	20639000	+		16253	27319	13227	13248	18139	18139					0.08012868917035121
HLSLRLDEE	9	Unmodified	_HLSLRLDEE_					0	0	0			REV__ENSG00000163214|ENST00000457308|DHX57	REV__ENSG00000163214|ENST00000457308|DHX57	MULTI-MSMS	OvCa99_classI_Rep5	1	556.293701171875	2	556.290745	1110.56694	0.14983	8.3346E-05	3.7502	0.0020862	3.9	0.0021696	556.2927379231662	105.1	0.61313	105.1	104.83	105.44	0					36	13	4	0	0	0	0.14998	1	11786	11786		84.916	4.4609	1	1828100	+		16254	20816	13228	13249	18140	18140					0.01607636120979805
HLSMWLSL	8	Unmodified	_HLSMWLSL_					0	0	0			REV__L1PREC2_dup1338|chr3:98831351-98834041:-|1.380298648680358|0.2119742938869221|2.7|429.0|144|3|anti-sense	REV__L1PREC2_dup1338|chr3:98831351-98834041:-|1.380298648680358|0.2119742938869221|2.7|429.0|144|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	493.760986328125	2	493.760038	985.505523	0.8033	0.00039664	1.2658	0.000625	2.0691	0.0010216	493.76049372344386	132.63	1.2336	132.4	131.98	133.21	-0.22696					64	24	4	0	0	0	0.73288	1	13097	13097		35.201	0	1	306710	+		16255	28608	13229	13250	18141	18141					0.012190328880365087
HLSRSNVDI	9	Unmodified	_HLSRSNVDI_					0	0	0		nc|ENSG00000090975|Q9BZ72-3|PITPNM2;nc|ENSG00000090975|Q9BZ72-2|PITPNM2;ENSG00000090975|ENST00000320201|PITPNM2	nc|ENSG00000090975|Q9BZ72-3|PITPNM2	nc|ENSG00000090975|Q9BZ72-3|PITPNM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2998046875	2	520.777805	1039.54106	2.053	0.0010691	4.1381	0.0021551	6.1911	0.0032242	521.281344439551	86.7	0.45669	86.7	86.431	86.888	0					14	10	2	0	0	0	0.027441	1	9156	9156		68.787	12.066	1	273770			16256	1855	13230	13251	18142	18142					0.02286786669378671
HLSSRPTKGV	10	Unmodified	_HLSSRPTKGV_					0	0	0			REV__ENST00000393791.7_1_12:57872476-57873010:-|nuORF	REV__ENST00000393791.7_1_12:57872476-57873010:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	541.3089599609375	2	541.309272	1080.60399	-0.98372	-0.0005325	-1.1531	-0.00062416	-2.1368	-0.0011567	541.308375845319	65.769	0.90191	65.769	65.426	66.328	0					37	22	2	0	0	0	0.62299	1	6035	6035		39.253	2.0937	1	6165700	+		16257	25286	13231	13252	18143	18143					0.06691352457414723
HLSYIPPEQ	9	Unmodified	_HLSYIPPEQ_					0	0	0		ENSG00000175809|ENST00000323684|CBLL2	ENSG00000175809|ENST00000323684|CBLL2	ENSG00000175809|ENST00000323684|CBLL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.801025390625	2	542.277106	1082.53966	-0.55313	-0.00029995	-0.17378	-9.4236E-05	-0.72691	-0.00039419	542.2765385073436	24.913	0.35444	24.913	24.687	25.042	0					8	6	2	0	0	0	0.027462	1	498	498		39.253	0	1	10321			16258	7565	13232	13253	18144	18144					0.0016915258061089844
HLTDITLKV	9	Unmodified	_HLTDITLKV_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;ENST00000565738.1_1_16:75674022-75675473:-|nuORF	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-MSMS	OvCa99_classI_Rep5	1	520.3121948242188	2	520.310949	1038.60735	1.5579	0.00081058	0.94729	0.00049289	2.5052	0.0013035	520.3110714470896	85.395	2.3293	85.395	84.472	86.801	0					191	56	7	0	0	0	0.0076265	4	8969	8939;8969;8999;9030		195.06	84.944	1	38016000			16259	1326	13233	13254	18145;18146;18147;18148	18146					0.08958602511438585
HLTDITLKV	9	Unmodified	_HLTDITLKV_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;ENST00000565738.1_1_16:75674022-75675473:-|nuORF	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-MSMS	OvCa99_classI_Rep5	1	520.316650390625	2	520.310949	1038.60735	1.6725	0.00087022	0.68635	0.00035712	2.3589	0.0012273	520.3111585118417	87.155	1.9557	87.155	86.761	88.717	0					67	46	3	0	0	0	0.2422	1	9180	9180		69.628	11.816	1	929770			16260	1326	13233	13254	18149	18149					0.08958602511438585
HLTGPQGSRRS	11	Unmodified	_HLTGPQGSRRS_					0	0	0		ENST00000564287.1_1:212731978-212732290:+|nuORF	ENST00000564287.1_1:212731978-212732290:+|nuORF	ENST00000564287.1_1:212731978-212732290:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	598.3235473632812	2	598.31816	1194.62177	4.0483	0.0024221	2.2301	0.0013343	6.2783	0.0037564	598.3194309070321	131.19	0.94769	129.71	129.35	130.3	-1.4779					34	19	4	0	0	0	0.7046	1	12631	12631		28.081	0.19925	1	45469			16261	13804	13234	13255	18150	18150					0.0322406771228998
HLTHHYQL	8	Unmodified	_HLTHHYQL_					0	0	0			REV__ENSG00000180257|ENST00000444460|ZNF816	REV__ENSG00000180257|ENST00000444460|ZNF816	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.7692260742188	2	524.769783	1047.52501	1.2056	0.00063268	-2.8747	-0.0015085	-1.669	-0.00087586	524.7680823154832	138.36	1.2572	136.83	136.07	137.33	-1.5284					38	28	2	0	0	0	0.7224	1	13453	13453		38.806	3.6054	1	15361	+		16262	22165	13235	13256	18151	18151					0.0031512522314187663
HLTHHYQL	8	Unmodified	_HLTHHYQL_					0	0	0			REV__ENSG00000180257|ENST00000444460|ZNF816	REV__ENSG00000180257|ENST00000444460|ZNF816	MULTI-MATCH	OvCa9_classI_Rep2	2		2	524.769783	1047.52501	-0.45847	-0.00024059	-0.83434	-0.00043784	-1.2928	-0.00067843	524.7690689757784	137.04	0.4386	136.81	136.6	137.03	-0.22696	-0.007756	0.0010464	NaN	38.806	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36794	+		16263	22165	13235	13256							0.0031512522314187663
HLTKESSSSHK	11	Unmodified	_HLTKESSSSHK_					0	0	0			REV__ENSG00000114857|ENST00000232978|NKTR	REV__ENSG00000114857|ENST00000232978|NKTR	MULTI-MSMS	OvCa9_classI_Rep4_	4	620.818115234375	2	620.817658	1239.62076	-0.0017921	-1.1125E-06	-0.48774	-0.0003028	-0.48954	-0.00030391	620.8173961382302	38.899	2.1681	35.973	35.7	37.868	-2.9264					130	42	5	0	0	0	0.58572	1	1585	1585		45.972	3.5761	1	2444800	+		16264	18207	13236	13257	18152	18152					0.010538085527286967
HLTKLKEF	8	Unmodified	_HLTKLKEF_					0	0	0		FLRT2|p.F226S|1|0.12|ENSG00000185070|chr14:85622191-85622191|T/C|missense_variant;ENSG00000185070|ENST00000330753|FLRT2	FLRT2|p.F226S|1|0.12|ENSG00000185070|chr14:85622191-85622191|T/C|missense_variant	FLRT2|p.F226S|1|0.12|ENSG00000185070|chr14:85622191-85622191|T/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	508.30078125	2	508.300384	1014.58622	-1.2171	-0.00061866	-0.76599	-0.00038935	-1.9831	-0.001008	508.3002749492039	102.53	1.7278	101.85	101.34	103.07	-0.68459					78	34	3	0	0	0	0.66704	1	9444	9444		50.025	2.3672	1	316480			16265	8223	13237	13258	18153	18153					0.07950637202566213
HLTMPKGSF	9	Unmodified	_HLTMPKGSF_					0	0	0		ENST00000261942.6_1_5:175919238-175921216:+|nuORF	ENST00000261942.6_1_5:175919238-175921216:+|nuORF	ENST00000261942.6_1_5:175919238-175921216:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.25482177734375	2	509.262945	1016.51134	2.6178	0.0013332	-3.9304	-0.0020016	-1.3126	-0.00066847	509.2608443858033	75.542	0.31527	75.542	75.407	75.723	0					12	7	2	0	0	0	0.027462	1	7542	7542		10.866	0	1	199030			16266	9877	13238	13259	18154	18154					0.0037413139968975884
HLTRYIDIL	9	Unmodified	_HLTRYIDIL_					0	0	0			REV__L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|23|1|sense;REV__nc|ENSG999|O00370|L1_ORF2	REV__nc|ENSG999|O00370|L1_ORF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	572.3275146484375	2	572.329673	1142.64479	-0.3182	-0.00018212	-3.6212	-0.0020725	-3.9394	-0.0022547	572.3274499626856	39.245	1.8689	36.319	35.948	37.817	-2.9264					87	34	4	0	0	0	0.56889	1	1588	1588		35.618	1.4457	1	787270	+		16267	29238;28518	13239	13260	18155	18155					0.07917693777039858
HLTVEEVVL	9	Unmodified	_HLTVEEVVL_					0	0	0			REV__ENST00000378106.9_1_20:13767958-13769290:+|nuORF	REV__ENST00000378106.9_1_20:13767958-13769290:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	519.7955322265625	2	519.795132	1037.57571	0.55988	0.00029102	-0.46939	-0.00024399	0.090486	4.7034E-05	519.7949404540711	79.481	2.7164	77.742	76.807	79.523	-1.7398					131	53	4	0	0	0	0.58665	1	6738	6738		33.516	1.5607	1	3817300	+		16268	25135	13240	13261	18156	18156					0.05842609757473838
HLVAFSSSQL	10	Unmodified	_HLVAFSSSQL_					0	0	0		ENST00000340911.8_1_9:97062029-97063649:+|nuORF;ENSG00000175787|ENST00000395395|ZNF169	ENST00000340911.8_1_9:97062029-97063649:+|nuORF	ENST00000340911.8_1_9:97062029-97063649:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.7918701171875	2	544.790381	1087.56621	0.24665	0.00013437	3.9196	0.0021354	4.1662	0.0022697	544.7919083089957	32.982	1.5883	30.286	29.903	31.492	-2.6954					65	31	4	0	0	0	0.72319	1	820	820		27.882	0	1	40310			16269	7563	13241	13262	18157	18157					0.025928414719601278
HLVAPSKVP	9	Unmodified	_HLVAPSKVP_					0	0	0			REV__nc|ENSG00000168918|Q92835-3|INPP5D	REV__nc|ENSG00000168918|Q92835-3|INPP5D	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.2888488769531	2	474.287277	946.560001	2.9498	0.001399	4.2892	0.0020343	7.239	0.0034334	474.28922077273074	129.53	5.9099	128.07	125.62	131.53	-1.4565					195	118	2	0	0	0	0.62352	1	12398	12398		29.15	0	1	37993	+		16270	21418	13242	13263	18158	18158					0.08458368031097052
HLVDEEKAR	9	Unmodified	_HLVDEEKAR_					0	0	0		nc|ENSG00000146755|Q86XT4-2|TRIM50;ENSG00000146755|ENST00000333149|TRIM50	nc|ENSG00000146755|Q86XT4-2|TRIM50	nc|ENSG00000146755|Q86XT4-2|TRIM50	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.2823486328125	2	548.790912	1095.56727	2.4491	0.0013441	2.8129	0.0015437	5.262	0.0028878	548.7924060766351	90.379	0.71514	90.379	90.101	90.816	0					40	17	3	0	0	0	0.027417	1	9701	9701		45.952	0	1	1633700			16271	5304	13243	13264	18159	18159					0.023310558408411453
HLVEVVPNGE	10	Unmodified	_HLVEVVPNGE_					0	0	0		nc|ENSG00000004948|P30988-5|CALCR;nc|ENSG00000004948|P30988-6|CALCR;nc|ENSG00000004948|P30988-3|CALCR;nc|ENSG00000004948|P30988-4|CALCR;ENSG00000004948|ENST00000426151|CALCR;nc|ENSG00000004948|P30988-1|CALCR	nc|ENSG00000004948|P30988-5|CALCR	nc|ENSG00000004948|P30988-5|CALCR	MULTI-MSMS	OvCa99_classI_Rep5	1	546.789306640625	2	546.787838	1091.56112	0.93582	0.0005117	0.74222	0.00040584	1.678	0.00091753	546.7881225030743	155.8	2.8358	155.8	155.12	157.96	0					140	55	3	0	0	0	0.45822	1	18261	18261		60.118	1.3363	1	297140			16272	839	13244	13265	18160	18160					0.019005376093446102
HLVHAKNAQ	9	Unmodified	_HLVHAKNAQ_					0	0	0		nc|ENSG00000197893|Q86VF7-4|NRAP;nc|ENSG00000197893|Q86VF7-3|NRAP;ENSG00000197893|ENST00000359988|NRAP;nc|ENSG00000197893|Q86VF7-2|NRAP	nc|ENSG00000197893|Q86VF7-4|NRAP	nc|ENSG00000197893|Q86VF7-4|NRAP	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.3016662597656	2	509.283057	1016.55156	-0.59336	-0.00030219	-2.0483	-0.0010432	-2.6417	-0.0013454	509.2820592893604	59.236	0.40313	59.236	59.011	59.414	0					17	10	2	0	0	0	0.027462	1	5054	5054		37.159	0	1	522200			16273	8761	13245	13266	18161	18161					0.043948141144596775
HLVIAVVKNCV	11	Unmodified	_HLVIAVVKNCV_					0	0	0			REV__ENSG00000182093|ENST00000649170|GET1	REV__ENSG00000182093|ENST00000649170|GET1	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.856689453125	2	597.855001	1193.69545	-0.38237	-0.0002286	2.6587	0.0015895	2.2763	0.0013609	597.8564103488146	145.14	4.0194	143.71	141.51	145.53	-1.4357					229	77	4	0	0	0	0.70518	1	14160	14160		27.882	7.8855	1	217250	+		16274	22261	13246	13267	18162	18162					0.10634899830392897
HLVKLGHKE	9	Unmodified	_HLVKLGHKE_					0	0	0		tr|A0A553SSK0|A0A553SSK0_NIACILacIfamilyDNA-bindingtranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03195PE=4SV=1	tr|A0A553SSK0|A0A553SSK0_NIACILacIfamilyDNA-bindingtranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03195PE=4SV=1	tr|A0A553SSK0|A0A553SSK0_NIACILacIfamilyDNA-bindingtranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03195PE=4SV=1	MSMS	OvCa9_classI_Rep2	2	530.8173828125	2	530.816733	1059.61891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.907	1	69.399	68.899	69.899	-2.5071								0	0	0	0.17936	1	5803	5803		35.618	7.736	1				16275	34384	13247	13268	18163	18163					0.09148844325432037
HLVLKVLTF	9	Unmodified	_HLVLKVLTF_					0	0	0		ENSG00000145386|ENST00000274026|CCNA2	ENSG00000145386|ENST00000274026|CCNA2	ENSG00000145386|ENST00000274026|CCNA2	MULTI-SECPEP	OvCa9_classI_Rep2	2	535.7786254882812	2	535.342052	1068.66955	-2.134	-0.0011424	-2.0014	-0.0010714	-4.1354	-0.0022139	535.3408188979008	51.488	0.74293	48.675	48.353	49.096	-2.8129					23	14	2	0	0	0	0.027462	1	3343	3343		17.365	5.1583	1	30514			16276	5220	13248	13269	18164	18164					0.13796373650393434
HLVLVRTVL	9	Unmodified	_HLVLVRTVL_					0	0	0			REV__ENST00000528694.1_1_11:829540-829996:+|nuORF	REV__ENST00000528694.1_1_11:829540-829996:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7554931640625	2	525.345126	1048.6757	-0.72381	-0.00038025	0.63783	0.00033508	-0.085986	-4.5172E-05	525.3454444795833	54.477	0.67759	54.477	54.214	54.891	0					24	15	2	0	0	0	0.027462	1	4393	4393		27.882	8.5223	1	274020	+		16277	27173	13249	13270	18165	18165					0.15330891881944808
HLVNNRSF	8	Unmodified	_HLVNNRSF_					0	0	0			REV__nc|ENSG00000133816|O94851-5|MICAL2;REV__MICAL3|p.E1822Afs*25|1|0.05|ENSG00000243156|chr22:17810794-17810795|-/G|frameshift_variant	REV__nc|ENSG00000133816|O94851-5|MICAL2	MULTI-MSMS	OvCa9_classI_Rep3	3	493.76092529296875	2	493.761958	985.509363	-0.567	-0.00027996	-1.1774	-0.00058136	-1.7444	-0.00086132	493.7612320121243	133.32	1.1284	132.19	131.88	133.01	-1.1249					55	22	3	0	0	0	0.73205	1	10715	10715		35.618	0.41757	1	214690	+		16278	19159;23465	13250	13271	18166	18166					0.016028387060941895
HLVPEVPTV	9	Unmodified	_HLVPEVPTV_					0	0	0		ENSG00000160685|ENST00000535420|ZBTB7B;nc|ENSG00000160685|O15156-2|ZBTB7B	ENSG00000160685|ENST00000535420|ZBTB7B	ENSG00000160685|ENST00000535420|ZBTB7B	MULTI-MSMS	OvCa99_classI_Rep5	1	495.78594970703125	2	495.784567	989.554582	1.9974	0.00099028	0.44115	0.00021872	2.4386	0.001209	495.7845938806685	96.745	1.6609	96.745	96.418	98.079	0					92	38	4	0	0	0	0.064607	2	10614	10592;10614		110.34	47.359	1	2022200			16279	6080	13251	13272	18167;18168	18168					0.0593864444861083
HLVPGLRIMA	10	Unmodified	_HLVPGLRIMA_					0	0	0		ENST00000439360.5_1_7:66119586-66132573:+|nuORF	ENST00000439360.5_1_7:66119586-66132573:+|nuORF	ENST00000439360.5_1_7:66119586-66132573:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8296508789062	2	553.828786	1105.64302	1.4061	0.00077877	0.88233	0.00048866	2.2885	0.0012674	553.8291816775361	139.45	3.0735	137.95	136.76	139.84	-1.4952					150	61	3	0	0	0	0.74484	1	13744	13744		25.45	6.0902	1	110800			16280	11912	13252	13273	18169	18169					0.09442361487435846
HLVPNEMIWD	10	Unmodified	_HLVPNEMIWD_					0	0	0			REV__CCDC180|p.H1510Ffs*11|1|0.03|ENSG00000197816|chr9:97370685-97370686|-/TT|frameshift_variant	REV__CCDC180|p.H1510Ffs*11|1|0.03|ENSG00000197816|chr9:97370685-97370686|-/TT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	628.3023071289062	2	627.302798	1252.59104	0.13304	8.3456E-05	3.0809	0.0019326	3.2139	0.0020161	627.8062795005883	57.449	0.3055	54.104	53.883	54.189	-3.3449					8	5	2	0	0	0	0.026891	1	3729	3729		47.657	3.2801	1	23658	+		16281	15749	13253	13274	18170	18170					-0.025148467169856303
HLVQLESLF	9	Unmodified	_HLVQLESLF_					0	0	0			REV__nc|ENSG00000182220|O75787-2|ATP6AP2	REV__nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-MSMS	OvCa9_classI_Rep3	3	543.3023681640625	2	543.303124	1084.5917	1.5262	0.00082921	-1.5691	-0.00085247	-0.042823	-2.3266E-05	543.3020480782708	122.92	1.093	121.89	121.64	122.73	-1.0286					39	20	2	0	0	0	0.33652	1	9476	9476		58.782	4.0056	1	193750	+		16282	22272	13254	13275	18171	18171					0.05278315994382865
HLVQLPAGAK	10	Unmodified	_HLVQLPAGAK_					0	0	0		ENST00000419457.1_1_13:29297857-29298106:-|nuORF	ENST00000419457.1_1_13:29297857-29298106:-|nuORF	ENST00000419457.1_1_13:29297857-29298106:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3101196289062	2	517.311284	1032.60801	0.010128	5.2392E-06	-0.21635	-0.00011192	-0.20622	-0.00010668	517.3110169376656	31.938	1.2365	29.228	28.986	30.222	-2.7097					60	24	4	0	0	0	0.46756	1	1002	1002		58.782	8.7574	1	305470			16283	11652	13255	13276	18172	18172					0.09301441951151901
HLVRVNKPL	9	Unmodified	_HLVRVNKPL_					0	0	0			REV__ENSG00000185070|ENST00000330753|FLRT2	REV__ENSG00000185070|ENST00000330753|FLRT2	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.8049926757812	2	538.340375	1074.6662	-1.2455	-0.0006705	4.0762	0.0021944	2.8307	0.0015239	538.3431589079559	74.321	0.31425	72.35	72.062	72.376	-1.9711					6	5	2	0	0	0	0.027462	1	6064	6064		33.516	3.0119	1	7959.8	+		16284	22478	13256	13277	18173	18173					0.13185123596417725
HLWGRGAVR	9	Unmodified	_HLWGRGAVR_					0	0	0			REV__ENST00000336300.9_1_1:228295970-228296864:-|nuORF	REV__ENST00000336300.9_1_1:228295970-228296864:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.2799072265625	2	526.299042	1050.58353	-0.97881	-0.00051515	-1.5223	-0.00080119	-2.5011	-0.0013163	526.2979691304581	44.443	0.80544	44.443	44.08	44.886	0					23	17	3	0	0	0	0.027462	1	2982	2982		25.45	10.585	1	116580	+		16285	24584	13257	13278	18174	18174					0.06026226588278405
HLWIVLPN	8	Unmodified	_HLWIVLPN_					0	0	0			REV__tr|A0A7D6ZHQ7|A0A7D6ZHQ7_9CLOTProlyloligopeptidasefamilyserinepeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03890PE=4SV=1	REV__tr|A0A7D6ZHQ7|A0A7D6ZHQ7_9CLOTProlyloligopeptidasefamilyserinepeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03890PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.25592041015625	2	496.28982	990.565087	-0.69447	-0.00034466	-3.0042	-0.001491	-3.6987	-0.0018356	496.288352664142	49.337	0.86839	49.337	49.031	49.899	0					28	19	2	0	0	0	0.028476	1	3726	3726		29.842	0	1	519380	+		16286	32034	13258	13279	18175	18175					0.06942671893693841
HLWKHHLN	8	Unmodified	_HLWKHHLN_					0	0	0			REV__nc|ENSG00000100330|Q13615-3|MTMR3	REV__nc|ENSG00000100330|Q13615-3|MTMR3	MULTI-MSMS	OvCa9_classI_Rep3	3	542.7935791015625	2	542.793592	1083.57263	0.43899	0.00023828	-1.8897	-0.0010257	-1.4507	-0.00078741	542.7924359243464	131.02	0.7299	129.89	129.66	130.39	-1.1249					25	14	3	0	0	0	0.74971	1	10442	10442		26.796	0.10319	1	50077	+		16287	17400	13259	13280	18176	18176					0.03418824214008964
HLWPLWVVG	9	Unmodified	_HLWPLWVVG_					0	0	0		ENST00000356584.7_1_19:57985735-57987048:-|nuORF	ENST00000356584.7_1_19:57985735-57987048:-|nuORF	ENST00000356584.7_1_19:57985735-57987048:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	553.3091430664062	2	553.810919	1105.60729	-1.0738	-0.00059466	-0.42077	-0.00023303	-1.4945	-0.00082769	554.3117668024805	63.049	1.8244	60.304	59.597	61.421	-2.7444					119	34	5	0	0	0	0.027462	1	4704	4704		39.021	1.21	1	309110			16288	10698	13260	13281	18177	18177					0.058706473020720296
HLYFGLLL	8	Unmodified	_HLYFGLLL_					0	0	0		ENST00000537247.5_1_12:100987507-100987675:+|nuORF	ENST00000537247.5_1_12:100987507-100987675:+|nuORF	ENST00000537247.5_1_12:100987507-100987675:+|nuORF	MSMS	OvCa99_classI_Rep5	1	488.74884033203125	2	488.286746	974.558939	NaN	NaN	NaN	NaN	NaN	NaN	NaN	157.37	1	157.37	156.87	157.87	0								0	0	0	0.30129	1	18443	18443		33.493	1.5381	1				16289	13403	13261	13282	18178	18178					0.07064153662201988
HLYFLFLN	8	Unmodified	_HLYFLFLN_					0	0	0		ENSG00000186105|ENST00000334994|LRRC70	ENSG00000186105|ENST00000334994|LRRC70	ENSG00000186105|ENST00000334994|LRRC70	MULTI-MSMS	OvCa99_classI_Rep5	1	533.7913208007812	2	533.789653	1065.56475	1.2454	0.00066476	0.37601	0.00020071	1.6214	0.00086547	533.7897024565245	81.647	0.60733	81.647	81.329	81.937	0					27	14	3	0	0	0	0.68312	1	8417	8417		46.766	4.292	1	2101600			16290	8313	13262	13283	18179	18179					0.03459252173843197
HLYILVTCL	9	Unmodified	_HLYILVTCL_					0	0	0		ENSG00000268606|ENST00000684311|MAGEA2;ENSG00000213401|ENST00000393869|MAGEA12;ENSG00000183305|ENST00000682532|MAGEA2B	ENSG00000268606|ENST00000684311|MAGEA2	ENSG00000268606|ENST00000684311|MAGEA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.8446655273438	2	537.804445	1073.59434	-0.95966	-0.00051611	4.0566	0.0021817	3.097	0.0016656	537.807033250535	36.883	0.45396	36.883	36.751	37.205	0					11	9	2	0	0	0	0.027462	1	1974	1974		33.516	12.569	1	37995			16291	8062	13263	13284	18180	18180					0.06048448127694428
HLYLFRKKMWR	11	Unmodified	_HLYLFRKKMWR_					0	0	0			REV__ENST00000260604.8_1_2:55870335-55906871:-|nuORF	REV__ENST00000260604.8_1_2:55870335-55906871:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2890625	3	526.634374	1576.88129	-0.46968	-0.00024735	4.4854	0.0023622	4.0157	0.0021148	526.9712376972984	73.162	0.36089	73.162	72.915	73.276	0					12	8	2	0	0	0	0.026448	1	7157	7157		13.508	7.5069	1	304430	+		16292	23930	13264	13285	18181	18181					0.11592722069690353
HLYLFRKKMWR	11	Unmodified	_HLYLFRKKMWR_					0	0	0			REV__ENST00000260604.8_1_2:55870335-55906871:-|nuORF	REV__ENST00000260604.8_1_2:55870335-55906871:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		3	526.634374	1576.88129	-1.2348	-0.0006503	6.3372	0.0033374	5.1023	0.0026871	526.6376143192666	75.664	0.5105	73.253	73.02	73.531	-2.4106	0.045355	0.00058354	NaN	13.508	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17067	+		16293	23930	13264	13285							0.11592722069690353
HLYPKNLDL	9	Unmodified	_HLYPKNLDL_					0	0	0			REV__ENST00000520817.5_1_8:41367338-41367521:+|nuORF	REV__ENST00000520817.5_1_8:41367338-41367521:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	556.8085327148438	2	556.808574	1111.60259	0.42358	0.00023585	2.1564	0.0012007	2.5799	0.0014365	556.8098048116499	121.74	1.2193	120.39	120.06	121.28	-1.3479					48	23	3	0	0	0	0.60342	1	11475	11475		31.53	1.9791	1	101620	+		16294	27062	13265	13286	18182	18182					0.051257183686630015
HLYPLLKH	8	Unmodified	_HLYPLLKH_					0	0	0			REV__ENST00000367455.8_1_1:192985286-192985367:-|nuORF	REV__ENST00000367455.8_1_1:192985286-192985367:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.8041076660156	2	510.803094	1019.59164	-2.1156	-0.0010806	2.6341	0.0013455	0.51851	0.00026486	510.80420936611904	107.67	1.0272	105.8	105.49	106.51	-1.8785					37	20	3	0	0	0	0.75915	1	9852	9852		20.482	2.1574	1	190310	+		16295	24896	13266	13287	18183	18183					0.08262360785045075
HLYQGPIGLH	10	Unmodified	_HLYQGPIGLH_					0	0	0		tr|A0A553SUQ9|A0A553SUQ9_NIACISensorhistidinekinaseKdpDOS=NialliacirculansOX=1397GN=CEQ21_05145PE=4SV=1	tr|A0A553SUQ9|A0A553SUQ9_NIACISensorhistidinekinaseKdpDOS=NialliacirculansOX=1397GN=CEQ21_05145PE=4SV=1	tr|A0A553SUQ9|A0A553SUQ9_NIACISensorhistidinekinaseKdpDOS=NialliacirculansOX=1397GN=CEQ21_05145PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.8063354492188	2	567.806365	1133.59818	0.37724	0.0002142	-0.65111	-0.0003697	-0.27387	-0.00015551	567.8060000872808	69.253	6.911	66.439	66.063	72.974	-2.8144					296	138	6	0	0	0	0.35697	1	3193	3193		73.975	5.49	1	2051600			16296	34632	13267	13288	18184	18184					0.03672253945751436
HLYTQGYCSP	10	Unmodified	_HLYTQGYCSP_					0	0	0			REV__FOXN1|p.L545Vfs*7|1|0.58|ENSG00000109101|chr17:28537122-28537123|CT/-|frameshift_variant	REV__FOXN1|p.L545Vfs*7|1|0.58|ENSG00000109101|chr17:28537122-28537123|CT/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	584.7578125	2	584.758223	1167.50189	-0.66102	-0.00038654	-0.0417	-2.4384E-05	-0.70272	-0.00041092	584.7580765861849	38.772	0.57727	38.772	38.619	39.196	0					28	12	4	0	0	0	0.53885	1	2234	2234		49.442	1.7842	1	584750	+		16297	17917	13268	13289	18185	18185					-0.07515681676522945
HLYTQGYCSP	10	Unmodified	_HLYTQGYCSP_					0	0	0			REV__FOXN1|p.L545Vfs*7|1|0.58|ENSG00000109101|chr17:28537122-28537123|CT/-|frameshift_variant	REV__FOXN1|p.L545Vfs*7|1|0.58|ENSG00000109101|chr17:28537122-28537123|CT/-|frameshift_variant	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	584.758223	1167.50189	-0.66102	-0.00038654	-0.0417	-2.4384E-05	-0.70272	-0.00041092	584.7580765861849	38.772	0.57727	38.772	38.619	39.196	0	0	0	NaN	49.442	28	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	584750	+		16298	17917	13268	13289							-0.07515681676522945
HMEIEGVRSL	10	Unmodified	_HMEIEGVRSL_					0	0	0		ENSG00000155530|ENST00000285928|LRGUK	ENSG00000155530|ENST00000285928|LRGUK	ENSG00000155530|ENST00000285928|LRGUK	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.8516845703125	2	585.800423	1169.58629	-1.0223	-0.00059888	0.43019	0.00025201	-0.59213	-0.00034687	585.8005526921138	36.39	2.2292	36.39	36.211	38.44	0					89	48	2	0	0	0	0.02676	1	2004	2004		58.23	12.278	1	198560			16299	5788	13269	13290	18186	18186					0.008282691402655473
HMIESLVPE	9	Oxidation (M)	_HM(Oxidation (M))IESLVPE_		HM(1)IESLVPE		HM(85)IESLVPE	0	0	1			REV__ENST00000487270.5_1_14:69062034-69062115:+|nuORF	REV__ENST00000487270.5_1_14:69062034-69062115:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	535.7630615234375	2	535.762975	1069.5114	0.74916	0.00040137	-0.86876	-0.00046545	-0.11961	-6.4081E-05	535.76248491945	78.562	2.0989	76.209	75.85	77.949	-2.3527					134	41	5	0	0	0	0.14739	1	4188	4188		85.359	10.316	1	1834000	+		16300	26600	13270	13291	18187	18187		595			-0.020579133909905067
HMIRGSKLII	10	Unmodified	_HMIRGSKLII_					0	0	0			REV__KIF2B|p.Q430H|1|0.41|ENSG00000141200|chr17:53824323-53824323|G/C|missense_variant;REV__ENSG00000141200|ENST00000268919|KIF2B	REV__KIF2B|p.Q430H|1|0.41|ENSG00000141200|chr17:53824323-53824323|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3546752929688	2	584.355168	1166.69578	-1.7162	-0.0010029	3.9032	0.0022809	2.187	0.001278	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.76627	1	14468	14468		23.042	3.0457	1	833330	+		16301	28338;19720	13271	13292	18188	18188					0.11910319550270287
HMKKMNIKK	9	Unmodified	_HMKKMNIKK_					0	0	0			REV__nc|ENSG00000180481|Q4G1C9-2|GLIPR1L2	REV__nc|ENSG00000180481|Q4G1C9-2|GLIPR1L2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	579.3173828125	2	579.335921	1156.65729	-0.34722	-0.00020116	-2.3883	-0.0013836	-2.7355	-0.0015848	579.3343310958736	38.713	0.24746	35.787	35.601	35.849	-2.9264					7	4	2	0	0	0	0.027462	1	1538	1538		55.504	4.1688	1	5665.6	+		16302	29032	13272	13293	18189	18189					0.0852269064405391
HMKKMNIKKIK	11	Unmodified	_HMKKMNIKKIK_					0	0	0			REV__nc|ENSG00000180481|Q4G1C9-2|GLIPR1L2	REV__nc|ENSG00000180481|Q4G1C9-2|GLIPR1L2	MULTI-MSMS	OvCa9_classI_Rep3	3	466.95184326171875	3	466.952715	1397.83632	1.5916	0.00074322	-2.6343	-0.0012301	-1.0426	-0.00048686	466.9514863874782	62.714	2.1935	59.681	59.362	61.555	-3.0339					129	43	5	0	0	0	0.71321	1	2350	2350		25.126	4.0938	1	504980	+		16303	29032	13273	13294	18190	18190					0.15331155212152225
HMKKTVEN	8	Unmodified	_HMKKTVEN_					0	0	0		LRRC1|p.L486S|1|0.28|ENSG00000137269|chr6:53922675-53922675|T/C|missense_variant;ENSG00000137269|ENST00000370888|LRRC1	LRRC1|p.L486S|1|0.28|ENSG00000137269|chr6:53922675-53922675|T/C|missense_variant	LRRC1|p.L486S|1|0.28|ENSG00000137269|chr6:53922675-53922675|T/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.76123046875	2	493.758027	985.5015	3.5833	0.0017693	2.3975	0.0011838	5.9807	0.002953	493.7590664833101	133.64	1.4269	132.12	131.8	133.23	-1.5257					73	28	4	0	0	0	0.73494	2	12943	12943;12956		34.173	0	1	430880			16304	4572	13274	13295	18191;18192	18191					0.00816943394295322
HMLKSVVLVTR	11	Unmodified	_HMLKSVVLVTR_					0	0	0			REV__ENST00000470521.1_1_1:222791452-222819114:+|nuORF	REV__ENST00000470521.1_1_1:222791452-222819114:+|nuORF	MSMS	OvCa9_classI_Rep2	2	641.8834228515625	2	641.886832	1281.75911	NaN	NaN	NaN	NaN	NaN	NaN	NaN	156.78	1	156.55	156.05	157.05	-0.22696								0	0	0	0.19474	1	15951	15951		23.523	8.6578	1		+		16305	26262	13275	13296	18193	18193					0.12950260267462
HMLRPDLDEF	10	Unmodified	_HMLRPDLDEF_					0	0	0			REV__ENSG00000129152|ENST00000250003|MYOD1	REV__ENSG00000129152|ENST00000250003|MYOD1	MULTI-SECPEP	OvCa9_classI_Rep2	2	424.91015625	3	424.872895	1271.59686	0.48464	0.00020591	0.68348	0.00029039	1.1681	0.0004963	424.8728341546416	64.999	0.51538	62.275	62.076	62.591	-2.7245					13	9	2	0	0	0	0.026646	1	4989	4989		53.089	16.771	1	19574	+		16306	18886	13276	13297	18194	18194					-0.028077482053504355
HMLSRCLKGI	10	Unmodified	_HMLSRCLKGI_					0	0	0		ENST00000434827.1_1_22:25745816-25746155:-|nuORF	ENST00000434827.1_1_22:25745816-25746155:-|nuORF	ENST00000434827.1_1_22:25745816-25746155:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	579.3176879882812	2	579.317728	1156.6209	-1.8182	-0.0010533	0.98564	0.000571	-0.83258	-0.00048233	579.3181889414963	38.501	0.98943	35.791	35.568	36.558	-2.7097					52	19	3	0	0	0	0.55359	1	1801	1801		47.657	10.498	1	338070			16307	11851	13277	13298	18195	18195					0.04885813747364409
HMNGLAPPL	9	Unmodified	_HMNGLAPPL_					0	0	0			REV__ENSG00000185085|ENST00000330574|INTS5	REV__ENSG00000185085|ENST00000330574|INTS5	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.30157470703125	2	475.249837	948.485122	1.9551	0.00092917	1.1301	0.00053707	3.0852	0.0014662	475.2510329196539	77.973	0.49743	77.973	77.757	78.254	0					29	11	3	0	0	0	0.027441	1	7878	7878		52.299	15.271	1	467590	+		16308	22479	13278	13299	18196	18196					0.008818622281978605
HMPCWFPAPI	10	Unmodified	_HMPCWFPAPI_					0	0	0		L1PA6_dup2267|chr6:2299837-2303022:+|1.5111882528479883|0.3006554191737456|2.33|429.0|130|2|anti-sense	L1PA6_dup2267|chr6:2299837-2303022:+|1.5111882528479883|0.3006554191737456|2.33|429.0|130|2|anti-sense	L1PA6_dup2267|chr6:2299837-2303022:+|1.5111882528479883|0.3006554191737456|2.33|429.0|130|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	600.3309326171875	2	599.780447	1197.54634	0.85001	0.00050982	3.3461	0.0020069	4.1961	0.0025167	599.7828538077292	82.26	1.0967	79.963	79.684	80.781	-2.2963					36	21	2	0	0	0	0.027007	1	4622	4622		19.36	5.2229	1	72893			16309	14717	13279	13300	18197	18197					-0.04452949064034328
HMQTPVPA	8	Unmodified	_HMQTPVPA_					0	0	0		ENST00000254043.7_1_17:39670059-39670221:-|nuORF	ENST00000254043.7_1_17:39670059-39670221:-|nuORF	ENST00000254043.7_1_17:39670059-39670221:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	440.7220764160156	2	440.720913	879.427273	4.0635	0.0017909	-0.59704	-0.00026313	3.4665	0.0015277	440.720523303343	99.056	1.0924	99.056	98.764	99.856	0					57	26	3	0	0	0	0.69415	1	10915	10915		44.531	3.9584	1	14230000			16310	9807	13280	13301	18198	18198					-0.017263996972246787
HMRAVENTL	9	Unmodified	_HMRAVENTL_					0	0	0		ENST00000470191.5_1_9:15845666-15971831:+|nuORF;nc|ENSG00000164989|Q6TFL3-3|CCDC171;ENSG00000164989|ENST00000380701|CCDC171;nc|ENSG00000164989|Q6TFL3-4|CCDC171	ENST00000470191.5_1_9:15845666-15971831:+|nuORF	ENST00000470191.5_1_9:15845666-15971831:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	535.7744750976562	2	535.774208	1069.53386	-0.99817	-0.00053479	-1.7064	-0.00091424	-2.7046	-0.001449	535.7735517640521	63.856	1.4581	63.856	63.376	64.834	0					117	35	5	0	0	0	0.33652	1	5770	5770		58.782	16.386	1	14029000			16311	6510	13281	13302	18199	18199					0.0018773079730181053
HMRAVENTL	9	Unmodified	_HMRAVENTL_					0	0	0		ENST00000470191.5_1_9:15845666-15971831:+|nuORF;nc|ENSG00000164989|Q6TFL3-3|CCDC171;ENSG00000164989|ENST00000380701|CCDC171;nc|ENSG00000164989|Q6TFL3-4|CCDC171	ENST00000470191.5_1_9:15845666-15971831:+|nuORF	ENST00000470191.5_1_9:15845666-15971831:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	535.774208	1069.53386	-0.21014	-0.00011259	-1.9915	-0.001067	-2.2017	-0.0011796	535.7728869576949	66.353	1.6936	63.657	62.52	64.213	-2.6958	-0.035632	-0.00036311	NaN	58.782	44	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30101			16312	6510	13281	13302							0.0018773079730181053
HMRAVENTL	9	Unmodified	_HMRAVENTL_					0	0	0		ENST00000470191.5_1_9:15845666-15971831:+|nuORF;nc|ENSG00000164989|Q6TFL3-3|CCDC171;ENSG00000164989|ENST00000380701|CCDC171;nc|ENSG00000164989|Q6TFL3-4|CCDC171	ENST00000470191.5_1_9:15845666-15971831:+|nuORF	ENST00000470191.5_1_9:15845666-15971831:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	535.774208	1069.53386	-0.29715	-0.00015921	-1.3692	-0.00073357	-1.6663	-0.00089278	535.77313092533	67.056	1.0861	63.566	63.295	64.381	-3.4902	-0.12745	0.00030375	NaN	58.782	34	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140950			16313	6510	13281	13302							0.0018773079730181053
HMTWLKAF	8	Unmodified	_HMTWLKAF_					0	0	0			REV__ENSG00000113318|ENST00000265081|MSH3	REV__ENSG00000113318|ENST00000265081|MSH3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.8189086914062	2	517.26803	1032.52151	0.73171	0.00037849	1.7391	0.0008996	2.4708	0.0012781	517.2687983796247	36.999	0.39939	34.107	33.993	34.392	-2.8925					11	7	2	0	0	0	0.028476	1	1315	1315		31.955	18.501	1	9853.1	+		16314	18144	13282	13303	18200	18200					0.006547391249114298
HNADQPLRV	9	Unmodified	_HNADQPLRV_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.2793579101562	2	525.277972	1048.54139	-2.4855	-0.0013056	1.7896	0.00094002	-0.69593	-0.00036556	525.2789444315765	49.778	2.4565	46.637	46.251	48.707	-3.1416					107	47	3	0	0	0	0.0086488	6	2827	2815;2827;2839;2852;2864;2876		176.09	82.891	1	3289900			16315	8130	13283	13304	18201;18202;18203;18204;18205;18206	18202					0.019062063892533843
HNALKLARL	9	Unmodified	_HNALKLARL_					0	0	0		nc|ENSG00000091157|Q9Y4E6-2|WDR7;ENSG00000091157|ENST00000254442|WDR7	nc|ENSG00000091157|Q9Y4E6-2|WDR7	nc|ENSG00000091157|Q9Y4E6-2|WDR7	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.7874755859375	2	518.324725	1034.6349	-0.94802	-0.00049138	1.7642	0.00091445	0.81622	0.00042307	518.3254080550286	50.611	0.35447	50.611	50.509	50.863	0					9	7	2	0	0	0	0.027462	1	3842	3842		23.042	0	1	41033			16316	1867	13284	13305	18207	18207					0.11896550562323682
HNELLRKFLL	10	Unmodified	_HNELLRKFLL_					0	0	0			REV__nc|ENSG00000064933|P54277-3|PMS1	REV__nc|ENSG00000064933|P54277-3|PMS1	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8820190429688	2	641.885147	1281.75574	-4.6434	-0.0029805	0.6524	0.00041876	-3.991	-0.0025618	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.79213	1	15441	15441		19.997	1.7347	1	543390	+		16317	16780	13285	13306	18208	18208					0.12613333485114708
HNFRTNQL	8	Unmodified	_HNFRTNQL_					0	0	0		ENST00000560136.5_1_15:91306227-91310162:+|nuORF;BLM|p.L730Cfs*11|1|0.05|ENSG00000197299|chr15:90765409-90765410|-/G|frameshift_variant;ENSG00000197299|ENST00000355112|BLM	ENST00000560136.5_1_15:91306227-91310162:+|nuORF	ENST00000560136.5_1_15:91306227-91310162:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.8019409179688	2	515.264865	1028.51518	-0.58455	-0.0003012	-1.2566	-0.00064747	-1.8411	-0.00094866	515.2644346024435	39.876	0.8056	36.922	36.616	37.421	-2.9541					23	15	2	0	0	0	0.028476	1	1721	1721		35.618	11.416	1	57543			16318	150	13286	13307	18209	18209					0.0020593721774275764
HNFSKKSSK	9	Unmodified	_HNFSKKSSK_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.7913818359375	2	531.788173	1061.56179	-1.4521	-0.00077223	-1.0266	-0.00054591	-2.4787	-0.0013181	532.2905597883731	63.422	0.48357	59.947	59.577	60.061	-3.475					14	9	2	0	0	0	0.027441	1	4467	4467		32.812	3.6424	1	29819			16319	6342	13287	13308	18210	18210					0.03347377049044553
HNINVYIH	8	Unmodified	_HNINVYIH_					0	0	0		ENSG00000120210|ENST00000381641|INSL6	ENSG00000120210|ENST00000381641|INSL6	ENSG00000120210|ENST00000381641|INSL6	MULTI-MSMS	OvCa9_classI_Rep2	2	505.26275634765625	2	505.264333	1008.51411	0.8595	0.00043427	-0.94134	-0.00047563	-0.081844	-4.1353E-05	505.26375901484937	29.367	1.0512	26.658	26.456	27.508	-2.7097					36	21	2	0	0	0	0.72922	1	734	734		37.028	5.0736	1	167190			16320	3419	13288	13309	18211	18211					0.01019722848843685
HNKMDDYI	8	Unmodified	_HNKMDDYI_					0	0	0			REV__nc|ENSG00000110436|P43004-3|SLC1A2	REV__nc|ENSG00000110436|P43004-3|SLC1A2	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.2507934570312	2	518.231842	1034.44913	-0.59609	-0.00030891	3.4773	0.0018021	2.8812	0.0014932	518.2335309310112	61.99	0.29636	61.99	61.826	62.122	0					9	6	2	0	0	0	0.028476	1	5508	5508		79.939	8.6435	1	124400	+		16321	17985	13289	13310	18212	18212					-0.06671639739329294
HNPGKETRLE	10	Unmodified	_HNPGKETRLE_					0	0	0		ALPL|p.E83K|1|0.44|ENSG00000162551|chr1:21561162-21561162|G/A|missense_variant	ALPL|p.E83K|1|0.44|ENSG00000162551|chr1:21561162-21561162|G/A|missense_variant	ALPL|p.E83K|1|0.44|ENSG00000162551|chr1:21561162-21561162|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	591.3089599609375	2	590.807094	1179.59963	-0.11167	-6.5978E-05	-3.0423	-0.0017974	-3.154	-0.0018634	591.3066796117727	77.658	1.5523	74.842	74.096	75.649	-2.8165					94	31	4	0	0	0	0.6349	1	6239	6239		37.812	2.6595	1	471580			16322	61	13290	13311	18213	18213					0.017018432438590025
HNPKILILD	9	Unmodified	_HNPKILILD_					0	0	0		tr|A0A7D7A179|A0A7D7A179_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02835PE=4SV=1	tr|A0A7D7A179|A0A7D7A179_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02835PE=4SV=1	tr|A0A7D7A179|A0A7D7A179_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02835PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8151245117188	2	531.818941	1061.62333	-6.4726	-0.0034422	2.2386	0.0011905	-4.234	-0.0022517	531.8202040929181	159.64	0.95506	158.31	157.96	158.91	-1.3316					28	18	3	0	0	0	0.69895	1	13812	13812		18.324	1.8513	1	50777			16323	36028	13291	13312	18214	18214					0.09498308748334239
HNQINVISNI	10	Unmodified	_HNQINVISNI_					0	0	0		tr|A0A7D6VV42|A0A7D6VV42_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09385PE=3SV=1	tr|A0A7D6VV42|A0A7D6VV42_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09385PE=3SV=1	tr|A0A7D6VV42|A0A7D6VV42_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09385PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.794189453125	2	576.312012	1150.60947	1.3687	0.0007888	0.92127	0.00053094	2.29	0.0013197	576.3135073514122	127.41	0.44417	127.41	127.27	127.72	0					20	9	3	0	0	0	0.026942	1	14734	14734		47.96	21.163	1	695840			16324	35212	13292	13313	18215	18215					0.040190312492541125
HNSHISAQR	9	Unmodified	_HNSHISAQR_					0	0	0			REV__ENSG00000139572|ENST00000267015|GPR84	REV__ENSG00000139572|ENST00000267015|GPR84	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.8080444335938	2	525.265396	1048.51624	-0.31693	-0.00016647	-2.3903	-0.0012556	-2.7073	-0.001422	525.7659398990074	67.52	0.6293	67.52	67.212	67.842	0					18	15	2	0	0	0	0.027462	1	6292	6292		27.882	0	1	345790	+		16325	19618	13293	13314	18216	18216					-0.006078484133240636
HNSLVTLTF	9	Unmodified	_HNSLVTLTF_					0	0	0			REV__nc|ENSG00000114790|Q96DR7-4|ARHGEF26	REV__nc|ENSG00000114790|Q96DR7-4|ARHGEF26	MULTI-MSMS	OvCa99_classI_Rep5	1	516.281494140625	2	516.279649	1030.54475	-0.34363	-0.00017741	0.028715	1.4825E-05	-0.31491	-0.00016258	516.2795617635463	72.982	0.43107	72.982	72.804	73.235	0					26	10	3	0	0	0	0.35444	1	7164	7164		56.721	3.3696	1	3227600	+		16326	18202	13294	13315	18217	18217					0.03069456443222407
HNTLLKLPMKA	11	Unmodified	_HNTLLKLPMKA_					0	0	0			REV__nc|ENSG00000196218|P21817-3|RYR1;REV__nc|ENSG00000198626|Q92736-2|RYR2	REV__nc|ENSG00000196218|P21817-3|RYR1	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3702392578125	2	633.373558	1264.73256	-4.1446	-0.0026251	-2.8428	-0.0018006	-6.9874	-0.0044257	633.3716506579397	149.94	3.0119	148.99	147.85	150.86	-0.9512					218	59	5	0	0	0	0.70142	1	12765	12765		29.17	2.4771	1	281260	+		16327	22801;23038	13295	13316	18218	18218					0.11078571376128821
HNTLLKLPMKA	11	Unmodified	_HNTLLKLPMKA_					0	0	0			REV__nc|ENSG00000196218|P21817-3|RYR1;REV__nc|ENSG00000198626|Q92736-2|RYR2	REV__nc|ENSG00000196218|P21817-3|RYR1	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3690185546875	2	633.373558	1264.73256	-4.8823	-0.0030923	-1.8485	-0.0011708	-6.7309	-0.0042631	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.71498	1	13318	13318		24.519	1.9395	1	765700	+		16328	22801;23038	13295	13316	18219	18219					0.11078571376128821
HNTQYGILN	9	Unmodified	_HNTQYGILN_					0	0	0			REV__ENSG00000256223|ENST00000248211|ZNF10	REV__ENSG00000256223|ENST00000248211|ZNF10	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7889404296875	2	530.26453	1058.51451	1.8082	0.00095885	0.35249	0.00018691	2.1607	0.0011458	530.264503732041	136.15	0.32896	136.15	135.92	136.25	0					9	6	2	0	0	0	0.027462	1	15861	15861		16.473	0	1	46312	+		16329	23535	13296	13317	18220	18220					-0.012409022219344479
HNTRRVEF	8	Unmodified	_HNTRRVEF_					0	0	0		ENSG00000091947|ENST00000206380|TMEM101	ENSG00000091947|ENST00000206380|TMEM101	ENSG00000091947|ENST00000206380|TMEM101	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.3067626953125	2	529.778139	1057.54173	2.5388	0.001345	0.8954	0.00047436	3.4342	0.0018194	529.7793565712662	75.299	0.2817	75.299	75.087	75.369	0					9	6	2	0	0	0	0.028476	1	7475	7475		31.955	11.958	1	102310			16330	1878	13297	13318	18221	18221					0.015256261091053602
HNTRRVEF	8	Unmodified	_HNTRRVEF_					0	0	0		ENSG00000091947|ENST00000206380|TMEM101	ENSG00000091947|ENST00000206380|TMEM101	ENSG00000091947|ENST00000206380|TMEM101	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	529.778139	1057.54173	-0.75757	-0.00040134	0.75545	0.00040022	-0.0021155	-1.1208E-06	529.7783559991004	78.441	0.33301	75.624	75.409	75.742	-2.8165	0.16281	-6.5032E-05	NaN	37.159	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30022			16331	1878	13297	13318							0.015256261091053602
HNWEFDLKKSM	11	Unmodified	_HNWEFDLKKSM_					0	0	0		ENST00000281017.7_2_2:669283-669583:-|nuORF	ENST00000281017.7_2_2:669283-669583:-|nuORF	ENST00000281017.7_2_2:669283-669583:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.7697448730469	3	478.899333	1433.67617	-0.82552	-0.00039534	-0.5828	-0.0002791	-1.4083	-0.00067444	479.2333911802236	55.407	0.45575	52.113	51.906	52.361	-3.2944					13	8	2	0	0	0	0.026033	1	3483	3483		35.178	17.345	1	34877			16332	10046	13298	13319	18222	18222					-0.023321012512042216
HPAAHPALPT	10	Unmodified	_HPAAHPALPT_					0	0	0		nc|ENSG00000146576|Q96N11-2|INTS15;ENSG00000146576|ENST00000344417|INTS15	nc|ENSG00000146576|Q96N11-2|INTS15	nc|ENSG00000146576|Q96N11-2|INTS15	MULTI-MSMS	OvCa9_classI_Rep3	3	506.2740783691406	2	506.272158	1010.52976	1.7132	0.00086734	1.5295	0.00077434	3.2427	0.0016417	506.2727467608177	54.771	2.6321	51.6	50.779	53.411	-3.1715					173	88	3	0	0	0	0.7759	1	1516	1516		21.96	1.4781	1	154000			16333	5299	13299	13320	18223	18223					0.024920093658806763
HPAPLPATNI	10	Unmodified	_HPAPLPATNI_					0	0	0			REV__ENST00000379902.7_1_12:53457662-53457908:+|nuORF	REV__ENST00000379902.7_1_12:53457662-53457908:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.3088989257812	2	515.787641	1029.56073	-0.40364	-0.00020819	-0.096589	-4.982E-05	-0.50023	-0.00025801	515.7875105692056	98.833	1.7394	97.94	97.41	99.149	-0.89305					62	34	3	0	0	0	0.027021	1	8928	8928		29.15	16.943	1	162120	+		16334	25166	13300	13321	18224	18224					0.04713162680127425
HPAPLPATNI	10	Unmodified	_HPAPLPATNI_					0	0	0			REV__ENST00000379902.7_1_12:53457662-53457908:+|nuORF	REV__ENST00000379902.7_1_12:53457662-53457908:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	515.787641	1029.56073	0.13549	6.9885E-05	-0.60616	-0.00031265	-0.47066	-0.00024276	515.787268657848	99.643	0.95107	97.958	97.676	98.627	-1.685	0.00084354	-0.00085963	NaN	35.618	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169550	+		16335	25166	13300	13321							0.04713162680127425
HPARPLAS	8	Unmodified	_HPARPLAS_					0	0	0		ENST00000524499.1_1_8:145133789-145133891:-|nuORF	ENST00000524499.1_1_8:145133789-145133891:-|nuORF	ENST00000524499.1_1_8:145133789-145133891:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	424.6984558105469	2	424.740494	847.466435	0.27403	0.00011639	-0.17047	-7.2405E-05	0.10356	4.3988E-05	424.7402958154433	31.1	1.0259	31.1	30.881	31.906	0					45	20	4	0	0	0	0.028476	1	1288	1288		45.952	0	1	866400			16336	13168	13301	13322	18225	18225					0.036600686486508494
HPASPPPLLL	10	Unmodified	_HPASPPPLLL_					0	0	0		ENST00000368366.5_1_1:155217575-155221373:-|nuORF;nc|ENSG00000160767|P81408-2|ENTREP3;nc|ENSG00000160767|P81408-3|ENTREP3;ENSG00000160767|ENST00000361361|ENTREP3;nc|ENSG00000160767|P81408-4|ENTREP3	ENST00000368366.5_1_1:155217575-155221373:-|nuORF	ENST00000368366.5_1_1:155217575-155221373:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.2976684570312	2	521.30821	1040.60187	1.4326	0.00074682	0.57746	0.00030104	2.01	0.0010479	521.3081865443078	117.6	0.47177	117.6	117.37	117.84	0					14	9	2	0	0	0	0.026509	1	13469	13469		85.359	5.4203	1	172630			16337	6087	13302	13323	18226	18226					0.08318923719616578
HPASPPPLLL	10	Unmodified	_HPASPPPLLL_					0	0	0		ENST00000368366.5_1_1:155217575-155221373:-|nuORF;nc|ENSG00000160767|P81408-2|ENTREP3;nc|ENSG00000160767|P81408-3|ENTREP3;ENSG00000160767|ENST00000361361|ENTREP3;nc|ENSG00000160767|P81408-4|ENTREP3	ENST00000368366.5_1_1:155217575-155221373:-|nuORF	ENST00000368366.5_1_1:155217575-155221373:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	521.30821	1040.60187	0.25384	0.00013233	-5.5243	-0.0028799	-5.2704	-0.0027475	521.8052698531878	118.93	0.44736	117.9	117.78	118.23	-1.0271	0.15283	-0.0050434	NaN	85.359	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26123			16338	6087	13302	13323							0.08318923719616578
HPAVHSVHGK	10	Unmodified	_HPAVHSVHGK_					0	0	0		ENST00000262096.12_1_8:17014207-17053083:+|nuORF	ENST00000262096.12_1_8:17014207-17053083:+|nuORF	ENST00000262096.12_1_8:17014207-17053083:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	534.7919921875	2	534.788507	1067.56246	3.0352	0.0016232	2.529	0.0013525	5.5642	0.0029757	534.7896759823677	56.343	2.6096	53.193	52.451	55.06	-3.1504					179	83	3	0	0	0	0.69986	1	1588	1588		30.504	1.3336	1	87189			16339	9879	13303	13324	18227	18227					0.03138216488764556
HPCLGLWLF	9	Unmodified	_HPCLGLWLF_					0	0	0			REV__PIPOX|p.H255Qfs*13|1|0.17|ENSG00000179761|chr17:29054649-29054649|C/-|frameshift_variant	REV__PIPOX|p.H255Qfs*13|1|0.17|ENSG00000179761|chr17:29054649-29054649|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8327026367188	2	543.28368	1084.55281	2.2482	0.0012214	-4.043	-0.0021965	-1.7948	-0.00097509	543.7830288930862	116.3	0.36462	116.3	116.19	116.55	0					10	7	2	0	0	0	0.027462	1	13330	13330		21.702	0	1	51450	+		16340	22139	13304	13325	18228	18228					0.013913121590121591
HPDRPLVIK	9	Unmodified	_HPDRPLVIK_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.80517578125	2	537.824558	1073.63456	-1.1174	-0.00060097	0.2408	0.00012951	-0.87661	-0.00047146	537.8250632916945	73.812	0.78883	71.412	70.897	71.685	-2.3999					19	14	2	0	0	0	0.027462	1	6048	6048		45.972	8.8131	1	28472			16341	6923	13305	13326	18229	18229					0.10069130842452978
HPERDLTFL	9	Unmodified	_HPERDLTFL_					0	0	0		ENST00000599239.5_1_19:48565437-48599986:-|nuORF;nc|ENSG00000105499|Q9UP65-2|PLA2G4C;ENSG00000105499|ENST00000599921|PLA2G4C;nc|ENSG00000105499|Q9UP65-3|PLA2G4C;ENST00000598457.5_1_19:48593588-48602975:-|nuORF	ENST00000599239.5_1_19:48565437-48599986:-|nuORF	ENST00000599239.5_1_19:48565437-48599986:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	564.79736328125	2	564.29583	1126.57711	0.09148	5.1622E-05	-2.5393	-0.0014329	-2.4478	-0.0013813	564.29415302259	31.819	0.49442	29.109	28.937	29.431	-2.7097					17	9	2	0	0	0	0.61208	1	997	997		30.504	0.6621	1	44194			16342	2465	13306	13327	18230	18230					0.01888243846201476
HPETGEPI	8	Unmodified	_HPETGEPI_					0	0	0			REV__tr|A0A7D6VYW4|A0A7D6VYW4_9CLOTZincABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17515PE=3SV=1	REV__tr|A0A7D6VYW4|A0A7D6VYW4_9CLOTZincABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17515PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	440.2132568359375	2	440.213975	878.413397	0.50822	0.00022373	-0.94874	-0.00041765	-0.44052	-0.00019393	440.21340227627337	114	1.6768	112.55	112.2	113.87	-1.4461					63	32	3	0	0	0	0.69415	1	10582	10582		44.531	3.7529	1	199710	+		16343	31827	13307	13328	18231	18231					-0.030673539246663495
HPETGEPI	8	Unmodified	_HPETGEPI_					0	0	0			REV__tr|A0A7D6VYW4|A0A7D6VYW4_9CLOTZincABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17515PE=3SV=1	REV__tr|A0A7D6VYW4|A0A7D6VYW4_9CLOTZincABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17515PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	440.213975	878.413397	1.7924	0.00078903	-2.0061	-0.00088313	-0.21375	-9.4096E-05	440.2129742325496	112.79	1.5797	112.67	112.23	113.81	-0.12174	0.12828	-0.00036637	NaN	44.531	69	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103010	+		16344	31827	13307	13328							-0.030673539246663495
HPETGEPI	8	Unmodified	_HPETGEPI_					0	0	0			REV__tr|A0A7D6VYW4|A0A7D6VYW4_9CLOTZincABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17515PE=3SV=1	REV__tr|A0A7D6VYW4|A0A7D6VYW4_9CLOTZincABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17515PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	440.213975	878.413397	1.164	0.00051242	-1.2589	-0.00055416	-0.094822	-4.1742E-05	440.2132313492287	113.49	1.1828	112.41	112.1	113.28	-1.0753	-0.13406	0.00029156	NaN	44.531	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117840	+		16345	31827	13307	13328							-0.030673539246663495
HPFKATVL	8	Unmodified	_HPFKATVL_					0	0	0		ENST00000449739.6_1_4:73923833-73935428:-|nuORF;nc|ENSG00000163626|Q8N8Q8|COX18;ENSG00000163626|ENST00000507544|COX18	ENST00000449739.6_1_4:73923833-73935428:-|nuORF	ENST00000449739.6_1_4:73923833-73935428:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	456.7660217285156	2	456.76872	911.522887	-1.0943	-0.00049982	-3.2788	-0.0014977	-4.3731	-0.0019975	456.76710390256716	37.466	1.7255	34.756	34.386	36.112	-2.7097					82	34	4	0	0	0	0.73288	1	1747	1747		35.201	0	1	799280			16346	6336	13308	13329	18232	18232					0.06358696485312976
HPFLGTMN	8	Unmodified	_HPFLGTMN_					0	0	0		ENST00000524062.5_1_13:45915702-45918542:+|nuORF	ENST00000524062.5_1_13:45915702-45918542:+|nuORF	ENST00000524062.5_1_13:45915702-45918542:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.7199401855469	2	458.720913	915.427273	3.8269	0.0017555	-2.9045	-0.0013323	0.92245	0.00042315	458.7195234976659	132.32	1.3151	130.82	130.17	131.48	-1.5015					41	25	2	0	0	0	0.74229	1	12741	12741		30.504	7.4612	1	42256			16347	13162	13309	13330	18233	18233					-0.03382399697204619
HPGLRMLLYWW	11	Unmodified	_HPGLRMLLYWW_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.5794372558594	3	491.260425	1470.75945	-1.1844	-0.00058186	2.3107	0.0011352	1.1263	0.0005533	491.2614591795994	27.566	0.15033	27.566	27.491	27.641	0					4	2	2	0	0	0	0.026296	1	817	817		15.333	1.8252	1	17956	+		16348	17054	13310	13331	18234	18234					0.04289679987346062
HPGPGLAAGAL	11	Unmodified	_HPGPGLAAGAL_					0	0	0		ENSG00000049323|ENST00000404816|LTBP1;nc|ENSG00000049323|Q14766-4|LTBP1	ENSG00000049323|ENST00000404816|LTBP1	ENSG00000049323|ENST00000404816|LTBP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.2468566894531	2	480.766709	959.518865	1.4683	0.00070592	2.2316	0.0010729	3.6999	0.0017788	480.76791729764693	79.049	0.5311	79.049	78.709	79.24	0					17	12	2	0	0	0	0.025357	1	7997	7997		40.573	13.777	1	341170			16349	1168	13311	13332	18235	18235					0.03748606991609904
HPHELLGTSF	10	Unmodified	_HPHELLGTSF_					0	0	0			REV__tr|A0A553SP20|A0A553SP20_NIACItRNA(guanine-N(1)-)-methyltransferaseOS=NialliacirculansOX=1397GN=trmDPE=3SV=1	REV__tr|A0A553SP20|A0A553SP20_NIACItRNA(guanine-N(1)-)-methyltransferaseOS=NialliacirculansOX=1397GN=trmDPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	569.2877197265625	2	569.288005	1136.56146	1.8964	0.0010796	-0.44867	-0.00025542	1.4477	0.00082415	569.2873877468398	134.51	0.52188	134.51	134.29	134.81	0					24	11	3	0	0	0	0.33376	1	15652	15652		76.774	17.992	1	863860	+		16350	30478	13312	13333	18236	18236					-0.0013604267080609134
HPHELLGTSF	10	Unmodified	_HPHELLGTSF_					0	0	0			REV__tr|A0A553SP20|A0A553SP20_NIACItRNA(guanine-N(1)-)-methyltransferaseOS=NialliacirculansOX=1397GN=trmDPE=3SV=1	REV__tr|A0A553SP20|A0A553SP20_NIACItRNA(guanine-N(1)-)-methyltransferaseOS=NialliacirculansOX=1397GN=trmDPE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	569.288005	1136.56146	1.8964	0.0010796	-0.44867	-0.00025542	1.4477	0.00082415	569.2873877468398	134.51	0.52188	134.51	134.29	134.81	0	0	0	NaN	76.774	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	863860	+		16351	30478	13312	13333							-0.0013604267080609134
HPHERKYF	8	Unmodified	_HPHERKYF_					0	0	0			REV__ENST00000518663.1_1_8:8873876-8973944:+|nuORF	REV__ENST00000518663.1_1_8:8873876-8973944:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.3237915039062	2	557.283057	1112.55156	0.48592	0.00027079	-0.52747	-0.00029395	-0.041546	-2.3153E-05	557.2831379207263	105.62	1.0078	103.6	103.4	104.41	-2.0161					23	19	2	0	0	0	0.028476	1	9606	9606		35.201	0	1	30784	+		16352	27032	13313	13334	18237	18237					-0.00021185885543673066
HPHLPLHAF	9	Unmodified	_HPHLPLHAF_					0	0	0		ENST00000377474.3_1_13:77458949-77459180:-|nuORF	ENST00000377474.3_1_13:77458949-77459180:-|nuORF	ENST00000377474.3_1_13:77458949-77459180:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	534.7913818359375	2	534.790518	1067.56648	3.0352	0.0016232	-1.2321	-0.00065889	1.8032	0.00096431	534.7896759823677	56.343	2.6096	53.193	52.451	55.06	-3.1504					179	83	3	0	0	0	0.61768	1	1598	1598		29.842	6.7991	1	87189			16353	11088	13314	13335	18238	18238					0.03540305982460268
HPHPILGGPS	10	Unmodified	_HPHPILGGPS_					0	0	0		ENST00000554578.5_1_12:57637331-57638104:-|nuORF	ENST00000554578.5_1_12:57637331-57638104:-|nuORF	ENST00000554578.5_1_12:57637331-57638104:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	506.2740783691406	2	506.272158	1010.52976	1.7132	0.00086734	1.5295	0.00077434	3.2427	0.0016417	506.2727467608177	54.771	2.6321	51.6	50.779	53.411	-3.1715					173	88	3	0	0	0	0.62668	1	1392	1392		38.806	0	1	154000			16354	13637	13315	13336	18239	18239					0.024920093659034137
HPHPYLLL	8	Unmodified	_HPHPYLLL_					0	0	0		ENST00000438189.6_1_11:67226126-67226375:+|nuORF	ENST00000438189.6_1_11:67226126-67226375:+|nuORF	ENST00000438189.6_1_11:67226126-67226375:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.7577209472656	2	495.281995	988.549437	-0.60435	-0.00029932	-3.8925	-0.0019279	-4.4968	-0.0022272	495.28012145674654	49.192	0.5209	49.192	48.986	49.507	0					27	11	3	0	0	0	0.028476	1	3643	3643		24.504	5.144	1	688710			16355	11895	13316	13337	18240	18240					0.05470385376668219
HPHQLKLSLLL	11	Unmodified	_HPHQLKLSLLL_					0	0	0			REV__ENST00000477496.5_1_3:123881713-123881914:+|nuORF	REV__ENST00000477496.5_1_3:123881713-123881914:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	433.6002502441406	3	433.602957	1297.78704	-5.7773	-0.002505	1.6152	0.00070035	-4.1621	-0.0018047	433.6035901203489	162.04	0.72089	160.41	160.05	160.77	-1.6239					30	17	2	0	0	0	0.72538	1	16021	16021		10.587	0.4829	1	23959	+		16356	26389	13317	13338	18241	18241					0.15005906519218115
HPIGLLIFE	9	Unmodified	_HPIGLLIFE_					0	0	0			REV__ENSG00000197309|ENST00000641351|OR10D3	REV__ENSG00000197309|ENST00000641351|OR10D3	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.8218994140625	2	519.80276	1037.59097	1.5566	0.00080913	2.6947	0.0014007	4.2513	0.0022098	519.8037745198025	133.94	0.33484	133.94	133.77	134.1	0					10	6	2	0	0	0	0.027456	1	15590	15590		35.201	6.0307	1	49733	+		16357	22910	13318	13339	18242	18242					0.07367521345327077
HPIKAKKSI	9	Unmodified	_HPIKAKKSI_					0	0	0		tr|A0A553SQM2|A0A553SQM2_NIACIConjugaltransferproteinOS=NialliacirculansOX=1397GN=CEQ21_07955PE=3SV=1	tr|A0A553SQM2|A0A553SQM2_NIACIConjugaltransferproteinOS=NialliacirculansOX=1397GN=CEQ21_07955PE=3SV=1	tr|A0A553SQM2|A0A553SQM2_NIACIConjugaltransferproteinOS=NialliacirculansOX=1397GN=CEQ21_07955PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.3277893066406	2	511.329476	1020.6444	-4.4323	-0.0022664	-0.073534	-3.76E-05	-4.5058	-0.002304	511.3293417529648	154.42	1.6613	152.97	152.67	154.33	-1.4516					104	42	5	0	0	0	0.69895	1	15346	15346		18.324	5.3652	1	1662600			16358	34177	13319	13340	18243	18243					0.13490318847846083
HPIKSEFIRA	10	Unmodified	_HPIKSEFIRA_					0	0	0		nc|ENSG00000108262|Q9Y2X7-2|GIT1;ENSG00000108262|ENST00000225394|GIT1;nc|ENSG00000108262|Q9Y2X7-3|GIT1	nc|ENSG00000108262|Q9Y2X7-2|GIT1	nc|ENSG00000108262|Q9Y2X7-2|GIT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	599.3416137695312	2	599.340572	1196.66659	-0.11136	-6.6742E-05	-0.3939	-0.00023608	-0.50526	-0.00030282	599.3401671033429	93.404	2.0597	90.897	90.463	92.522	-2.5072					90	42	4	0	0	0	0.46756	1	8139	8139		58.782	7.5893	1	343780			16359	2642	13320	13341	18244	18244					0.07612498525622868
HPILIGPLN	9	Unmodified	_HPILIGPLN_					0	0	0			REV__ENST00000535011.6_1_7:128410370-128410973:+|nuORF	REV__ENST00000535011.6_1_7:128410370-128410973:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	488.2793273925781	2	487.295102	972.575651	-0.7752	-0.00037775	0.69551	0.00033892	-0.079688	-3.8832E-05	487.2953231700668	102.64	1.1341	101.95	101.69	102.82	-0.68459					45	22	4	0	0	0	0.027462	1	9553	9553		24.203	1.1603	1	124660	+		16360	27281	13321	13342	18245	18245					0.0882665454812468
HPIRVVNAL	9	Unmodified	_HPIRVVNAL_					0	0	0		ENSG00000120029|ENST00000370033|ARMH3;ENST00000470043.1_1_10:103792731-103793132:-|nuORF	ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	MULTI-MSMS	OvCa9_classI_Rep3	3	509.81146240234375	2	509.811451	1017.60835	0.47297	0.00024113	-0.5506	-0.0002807	-0.077632	-3.9577E-05	509.8110619642964	69.148	2.0564	66.334	66.063	68.119	-2.8143					102	40	4	0	0	0	0.53957	3	3068	3062;3068;3075		38.806	6.8513	1	226670			16361	3412	13322	13343	18246;18247;18248	18247					0.10024861670990504
HPIRVVNAL	9	Unmodified	_HPIRVVNAL_					0	0	0		ENSG00000120029|ENST00000370033|ARMH3;ENST00000470043.1_1_10:103792731-103793132:-|nuORF	ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	MULTI-MATCH	OvCa99_classI_Rep5	1		2	509.811451	1017.60835	-0.9128	-0.00046536	0.26618	0.0001357	-0.64661	-0.00032965	509.811579531186	65.951	0.34775	65.951	65.748	66.096	0	-0.19172	0.00072485	NaN	38.806	18	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	742450			16362	3412	13322	13343							0.10024861670990504
HPIYDIKSL	9	Unmodified	_HPIYDIKSL_					0	0	0		KRR1|p.N218D|1|0.08|ENSG00000111615|chr12:75505206-75505206|T/C|missense_variant	KRR1|p.N218D|1|0.08|ENSG00000111615|chr12:75505206-75505206|T/C|missense_variant	KRR1|p.N218D|1|0.08|ENSG00000111615|chr12:75505206-75505206|T/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	543.3025512695312	2	543.303124	1084.5917	-0.89278	-0.00048505	0.37574	0.00020414	-0.51704	-0.00028091	543.3033572332077	122.04	1.1862	121.82	121.52	122.71	-0.21803					53	23	4	0	0	0	0.19716	1	11814	11814		76.847	0	1	115340			16363	14527	13323	13344	18249	18249					0.05278315994382865
HPIYNIKSL	9	Unmodified	_HPIYNIKSL_					0	0	0		ENSG00000111615|ENST00000229214|KRR1	ENSG00000111615|ENST00000229214|KRR1	ENSG00000111615|ENST00000229214|KRR1	MULTI-MSMS	OvCa9_classI_Rep3	3	542.8103637695312	2	542.811116	1083.60768	0.12363	6.7107E-05	-0.44555	-0.00024185	-0.32192	-0.00017474	542.810676917885	73.247	2.51	70.76	70.382	72.892	-2.4873					104	50	4	0	0	0	0.045281	4	3559	3553;3559;3565;3572		122.18	13.441	1	573950			16364	2833	13324	13345	18250;18251;18252;18253	18251					0.06922022231265146
HPKATRTL	8	Unmodified	_HPKATRTL_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.K1327Rfs*8|1|0.05|ENSG00000065526|chr1:15930219-15930220|-/G|frameshift_variant;SPEN|p.L1328Vfs*10|1|0.05|ENSG00000065526|chr1:15930221-15930222|-/GTCCAATCAAAAAAGCC|frameshift_variant;SPEN|p.S920Wfs*24|1|0.06|ENSG00000065526|chr1:15928998-15928999|-/GGTCTCAAATTCCTGAC|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.27447509765625	2	462.274701	922.534849	0.44474	0.00020559	-0.65507	-0.00030282	-0.21033	-9.7229E-05	462.2743614329176	36.608	1.4958	33.715	33.345	34.841	-2.8925					79	29	5	0	0	0	0.66057	1	1274	1274		51.335	5.3835	1	314320			16365	1329	13325	13346	18254	18254					0.07048313228528968
HPKGPLAHK	9	Unmodified	_HPKGPLAHK_					0	0	0			REV__ENST00000519651.5_2_8:143352476-143352983:-|nuORF	REV__ENST00000519651.5_2_8:143352476-143352983:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	492.79241943359375	2	492.790518	983.566484	-0.80378	-0.0003961	4.0856	0.0020133	3.2818	0.0016172	492.79244163696364	28.814	0.34924	28.814	28.638	28.987	0					14	6	3	0	0	0	0.64427	1	980	980		26.693	6.2111	1	95916	+		16366	27048	13326	13347	18255	18255					0.07404305982458936
HPKKSAKQ	8	Unmodified	_HPKKSAKQ_					0	0	0			REV__L1MDa_dup2778|chr7:47340719-47342131:-|2.305162096757514|0.4082244758708406|2.5|429.0|18|1|sense	REV__L1MDa_dup2778|chr7:47340719-47342131:-|2.305162096757514|0.4082244758708406|2.5|429.0|18|1|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.2745666503906	2	462.274701	922.534849	0.44474	0.00020559	-0.65507	-0.00030282	-0.21033	-9.7229E-05	462.2743614329176	36.608	1.4958	33.715	33.345	34.841	-2.8925					79	29	5	0	0	0	0.62934	1	1301	1301		57.811	0	1	314320	+		16367	28434	13327	13348	18256	18256					0.070483132285176
HPKRFTPE	8	Unmodified	_HPKRFTPE_					0	0	0		nc|ENSG00000050730|Q96KP6-2|TNIP3;nc|ENSG00000050730|Q96KP6-3|TNIP3	nc|ENSG00000050730|Q96KP6-2|TNIP3	nc|ENSG00000050730|Q96KP6-2|TNIP3	MULTI-MSMS	OvCa9_classI_Rep3	3	506.27337646484375	2	506.272158	1010.52976	1.7132	0.00086734	1.5295	0.00077434	3.2427	0.0016417	506.2727467608177	54.771	2.6321	51.6	50.779	53.411	-3.1715					173	88	3	0	0	0	0.7224	1	1493	1493		38.806	0	1	154000			16368	14873	13328	13349	18257	18257					0.02492009365892045
HPKRSVSL	8	Unmodified	_HPKRSVSL_					0	0	0		nc|ENSG00000104765|O60238-2|BNIP3L;PPP2R2A-BNIP3L|1|fusion;ENSG00000104765|ENST00000380629|BNIP3L;PPP2R2A-BNIP3L|2|fusion	nc|ENSG00000104765|O60238-2|BNIP3L	nc|ENSG00000104765|O60238-2|BNIP3L	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.2747497558594	2	462.274701	922.534849	0.44474	0.00020559	-0.65507	-0.00030282	-0.21033	-9.7229E-05	462.2743614329176	36.608	1.4958	33.715	33.345	34.841	-2.8925					79	29	5	0	0	0	0.7224	1	1287	1287		38.806	3.1879	1	314320			16369	2391	13329	13350	18258	18258					0.07048313228528968
HPKRTATL	8	Unmodified	_HPKRTATL_					0	0	0		ENSG00000176171|ENST00000368636|BNIP3;BNIP3-ABI1|1|fusion;BNIP3-ABI1|2|fusion;BNIP3-ABI1|3|fusion;BNIP3-ABI1|8|fusion;BNIP3-ABI1|6|fusion;BNIP3-ABI1|4|fusion;BNIP3-ABI1|7|fusion;BNIP3-ABI1|5|fusion;ENST00000550043.1_1_14:28734103-28734340:+|nuORF	ENSG00000176171|ENST00000368636|BNIP3	ENSG00000176171|ENST00000368636|BNIP3	MULTI-MSMS	OvCa9_classI_Rep2	2	462.2745666503906	2	462.274701	922.534849	-2.6532	-0.0012265	2.7827	0.0012864	0.12947	5.9849E-05	462.27575368514925	36.847	1.1335	34.138	33.745	34.879	-2.7097					43	22	4	0	0	0	0.72896	1	1615	1615		37.159	0	1	77166			16370	157	13330	13351	18259	18259					0.07048313228528968
HPKRVLARAIS	11	Unmodified	_HPKRVLARAIS_					0	0	0			REV__tr|A0A553SJE9|A0A553SJE9_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16580PE=4SV=1	REV__tr|A0A553SJE9|A0A553SJE9_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16580PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	624.375244140625	2	624.388388	1246.76222	-6.4707	-0.0040402	-2.5286	-0.0015788	-8.9993	-0.005619	624.3863174250398	163.69	0.27054	162.06	161.87	162.14	-1.6336					11	6	2	0	0	0	0.026289	1	16162	16162		13.454	2.5885	1	23562	+		16371	30003	13331	13352	18260	18260					0.14871271436527422
HPKVKKWL	8	Unmodified	_HPKVKKWL_					0	0	0			REV__ENSG00000111727|ENST00000229330|HCFC2	REV__ENSG00000111727|ENST00000229330|HCFC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.7833251953125	2	518.326737	1034.63892	1.2976	0.00067258	-1.2792	-0.00066307	0.018357	9.5151E-06	518.326166735685	112.47	0.72307	112.47	112.11	112.83	0					26	13	3	0	0	0	0.028476	1	12828	12828		35.201	6.0512	1	226240	+		16372	18053	13332	13353	18261	18261					0.12298640056019394
HPKYIPVPFP	10	Unmodified	_HPKYIPVPFP_					0	0	0			REV__PSD4|p.I884Mfs*131|1|0.06|ENSG00000125637|chr2:113198767-113198767|C/-|frameshift_variant	REV__PSD4|p.I884Mfs*131|1|0.06|ENSG00000125637|chr2:113198767-113198767|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.3175659179688	2	597.837134	1193.65972	2.1398	0.0012793	1.8728	0.0011196	4.0126	0.0023989	597.8398025373631	108.59	0.3905	108.59	108.37	108.76	0					12	8	2	0	0	0	0.026822	1	12293	12293		38.806	6.8513	1	154780	+		16373	18734	13333	13354	18262	18262					0.0706318564502908
HPLFPGIFSL	10	Unmodified	_HPLFPGIFSL_					0	0	0		ENST00000563115.5_1_16:57496627-57503283:+|nuORF	ENST00000563115.5_1_16:57496627-57503283:+|nuORF	ENST00000563115.5_1_16:57496627-57503283:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	563.7933349609375	2	564.316035	1126.61752	-0.65031	-0.00036698	-1.5343	-0.00086583	-2.1846	-0.0012328	564.3153456569646	89.081	0.93174	86.95	86.559	87.491	-2.1309					27	18	2	0	0	0	0.027021	1	5418	5418		37.159	0	1	36410			16374	13782	13334	13355	18263	18263					0.05927210236654901
HPLFPLLAL	9	Unmodified	_HPLFPLLAL_					0	0	0		nc|ENSG00000188013|A8K0S8|MEIS3P2;nc|ENSG00000105419|Q99687-3|MEIS3;ENSG00000105419|ENST00000558555|MEIS3;ENST00000561204.5_1_19:47909736-47921444:-|nuORF;nc|ENSG00000105419|Q99687-2|MEIS3;ENST00000561040.1_1_19:47919907-47920643:-|nuORF;ENST00000480179.1_1_21:44424491-44437149:+|nuORF;MEIS1|p.K275Ffs*38|1|0.17|ENSG00000143995|chr2:66512227-66512228|-/GTTTGGTTGGGTGGAAGGAGTGCTGATTTAC|frameshift_variant;MEIS1-SUPT3H|1|fusion;ENSG00000143995|ENST00000272369|MEIS1;nc|ENSG00000143995|O00470-2|MEIS1;nc|ENSG00000134138|O14770-5|MEIS2;ENST00000561163.5_1_15:37328933-37390391:-|nuORF;nc|ENSG00000134138|O14770-7|MEIS2;nc|ENSG00000134138|O14770-8|MEIS2;nc|ENSG00000134138|O14770-3|MEIS2;nc|ENSG00000134138|O14770-2|MEIS2;nc|ENSG00000134138|O14770-4|MEIS2;ENSG00000134138|ENST00000561208|MEIS2	nc|ENSG00000188013|A8K0S8|MEIS3P2;nc|ENSG00000134138|O14770-5|MEIS2	nc|ENSG00000188013|A8K0S8|MEIS3P2	MULTI-MSMS	OvCa9_classI_Rep2	2	510.8134460449219	2	510.81567	1019.61679	-2.5987	-0.0013274	-1.2768	-0.00065222	-3.8755	-0.0019797	510.81485810912824	147.13	0.94724	146.9	146.62	147.57	-0.22696					35	18	3	0	0	0	0.61768	1	14862	14862		29.842	4.3914	1	105990			16375	2456;4263	13335	13356	18264	18264					0.10776415587611154
HPLGRTLAQ	9	Unmodified	_HPLGRTLAQ_					0	0	0		ENST00000398421.6_1_7:74191697-74197664:+|nuORF	ENST00000398421.6_1_7:74191697-74197664:+|nuORF	ENST00000398421.6_1_7:74191697-74197664:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.75927734375	2	496.785433	991.556313	-0.58143	-0.00028884	1.8667	0.00092735	1.2853	0.00063851	496.78533828506164	65.555	0.4846	62.069	61.743	62.227	-3.4854					12	9	2	0	0	0	0.027455	1	4741	4741		42.396	11.892	1	29895			16376	11370	13336	13357	18265	18265					0.06019698257227901
HPLLCASLLL	10	Unmodified	_HPLLCASLLL_					0	0	0			REV__ENST00000356300.8_1_14:24047776-24047998:-|nuORF	REV__ENST00000356300.8_1_14:24047776-24047998:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	540.3194580078125	2	540.31772	1078.62089	1.9631	0.0010607	-3.6193	-0.0019556	-1.6562	-0.00089488	540.3155860935507	117.69	0.56618	117.69	117.18	117.74	0					30	11	3	0	0	0	0.49049	1	13479	13479		55.504	2.1528	1	388530	+		16377	24760	13337	13358	18266	18266					0.0847213701902092
HPLPLRAASP	10	Unmodified	_HPLPLRAASP_					0	0	0		ENST00000389856.9_1_14:91845663-91845717:-|nuORF	ENST00000389856.9_1_14:91845663-91845717:-|nuORF	ENST00000389856.9_1_14:91845663-91845717:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.8198852539062	2	529.808908	1057.60326	1.4292	0.00075721	-0.59016	-0.00031267	0.83906	0.00044454	529.808354381486	83.647	0.67412	83.647	83.377	84.051	0					25	13	2	0	0	0	0.027056	1	8749	8749		27.882	0	1	764450			16378	11201	13338	13359	18267	18267					0.07676557808372309
HPLPLTKLH	9	Unmodified	_HPLPLTKLH_					0	0	0			REV__chr8:144099611-144099703|162|105.45|0.84|6.97|-|1|None,SHARPIN|1	REV__chr8:144099611-144099703|162|105.45|0.84|6.97|-|1|None,SHARPIN|1	MULTI-MSMS	OvCa9_classI_Rep2	2	528.3198852539062	2	528.321651	1054.62875	-1.2877	-0.00068031	-2.7436	-0.0014495	-4.0312	-0.0021298	528.3201028484496	56.253	2.2315	53.449	52.879	55.11	-2.804					126	44	4	0	0	0	0.42057	1	3969	3969		50.025	12.213	1	541320	+		16379	16110	13339	13360	18268	18268					0.10362032330772308
HPLPPLAAR	9	Unmodified	_HPLPPLAAR_					0	0	0		ENST00000357681.9_1_1:203652030-203652153:+|nuORF	ENST00000357681.9_1_1:203652030-203652153:+|nuORF	ENST00000357681.9_1_1:203652030-203652153:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.3033752441406	2	486.292894	970.571235	-0.8322	-0.0004047	-4.3609	-0.0021207	-5.1932	-0.0025254	486.29064454463554	28.416	0.4982	28.416	28.19	28.688	0					17	9	2	0	0	0	0.027462	1	904	904		13.775	1.5685	1	49155			16380	10719	13340	13361	18269	18269					0.08477190125211109
HPLQQALVL	9	Unmodified	_HPLQQALVL_					0	0	0			REV__RASGEF1A|p.T223P|1|0.29|ENSG00000198915|chr10:43200681-43200681|T/G|missense_variant	REV__RASGEF1A|p.T223P|1|0.29|ENSG00000198915|chr10:43200681-43200681|T/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	509.80377197265625	2	509.805834	1017.59712	-0.41042	-0.00020923	-3.6368	-0.0018541	-4.0473	-0.0020633	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.61208	1	13606	13606		30.504	2.6214	1	150140	+		16381	29329	13341	13362	18270	18270					0.08902039576844345
HPLVTDLLD	9	Unmodified	_HPLVTDLLD_					0	0	0			REV__ENSG00000111530|ENST00000545606|CAND1	REV__ENSG00000111530|ENST00000545606|CAND1	MULTI-MSMS	OvCa99_classI_Rep5	1	511.7815246582031	2	511.779482	1021.54441	1.0265	0.00052535	1.5587	0.00079769	2.5852	0.001323	511.78045448470596	154.36	1.0446	154.36	154.03	155.07	0					61	20	4	0	0	0	0.46377	1	18100	18100		45.952	6.6991	1	232080	+		16382	18037	13342	13363	18271	18271					0.034500367233818
HPLVYVVSL	9	Unmodified	_HPLVYVVSL_					0	0	0		nc|ENSG00000149305|O95264-2|HTR3B;ENSG00000149305|ENST00000260191|HTR3B	nc|ENSG00000149305|O95264-2|HTR3B	nc|ENSG00000149305|O95264-2|HTR3B	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.8130493164062	2	513.80276	1025.59097	1.7433	0.00089571	-0.74855	-0.00038461	0.99475	0.00051111	513.8022053379653	117.28	0.56505	117.28	117.09	117.65	0					17	11	2	0	0	0	0.027462	1	13412	13412		33.516	3.0119	1	129240			16383	5453	13343	13364	18272	18272					0.0791952134532039
HPLWLVLFATL	11	Unmodified	_HPLWLVLFATL_					0	0	0			REV__ENSG00000163933|ENST00000296292|RFT1	REV__ENSG00000163933|ENST00000296292|RFT1	MULTI-MSMS	OvCa9_classI_Rep3	3	437.5910339355469	3	437.26042	1308.75943	-5.4916	-0.0024013	-0.69392	-0.00030342	-6.1855	-0.0027047	437.2603836543466	155.94	1.235	154.87	154.57	155.81	-1.073					54	30	2	0	0	0	0.72466	1	13400	13400		20.03	3.3131	1	23456	+		16384	20914	13344	13365	18273	18273					0.11740003258978504
HPLYLRLVA	9	Unmodified	_HPLYLRLVA_					0	0	0		ENSG00000153179|ENST00000542104|RASSF3	ENSG00000153179|ENST00000542104|RASSF3	ENSG00000153179|ENST00000542104|RASSF3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.3120727539062	2	541.329476	1080.6444	-0.69234	-0.00037478	-3.0114	-0.0016302	-3.7038	-0.002005	541.3279071371513	64.039	0.48875	60.564	60.393	60.882	-3.475					13	9	2	0	0	0	0.027462	1	4568	4568		18.324	0	1	75317			16385	5664	13345	13366	18274	18274					0.1073031884784541
HPNFIRRK	8	Unmodified	_HPNFIRRK_					0	0	0			REV__ENST00000292782.8_1_3:182658187-182658337:-|nuORF	REV__ENST00000292782.8_1_3:182658187-182658337:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.7717895507812	2	534.314692	1066.61483	0.14837	7.9274E-05	-1.8203	-0.00097264	-1.672	-0.00089336	534.3132825910757	64.78	0.45129	64.78	64.544	64.995	0					13	10	2	0	0	0	0.028476	1	5902	5902		35.201	0	1	444530	+		16386	24165	13346	13367	18275	18275					0.08418799622359074
HPNTLSILFR	10	Unmodified	_HPNTLSILFR_					0	0	0			REV__nc|ENSG00000107862|Q92538-3|GBF1	REV__nc|ENSG00000107862|Q92538-3|GBF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	599.3421630859375	2	599.340572	1196.66659	-0.11136	-6.6742E-05	-0.3939	-0.00023608	-0.50526	-0.00030282	599.3401671033429	93.404	2.0597	90.897	90.463	92.522	-2.5072					90	42	4	0	0	0	0.50999	1	8152	8152		52.937	10.541	1	343780	+		16387	17862	13347	13368	18276	18276					0.07612498525600131
HPPPLPQAR	9	Unmodified	_HPPPLPQAR_					0	0	0			REV__ENST00000219611.6_1_16:604006-604486:+|nuORF	REV__ENST00000219611.6_1_16:604006-604486:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.81536865234375	2	506.787976	1011.5614	0.55607	0.00028181	2.9025	0.0014709	3.4586	0.0017528	506.789332803657	35.361	0.84995	32.512	32.24	33.09	-2.849					31	16	3	0	0	0	0.027462	1	1102	1102		31.955	0	1	21652	+		16388	23737	13348	13369	18277	18277					0.056080021198340546
HPPTPKRL	8	Unmodified	_HPPTPKRL_					0	0	0		ENST00000361201.8_1_X:151896282-151896648:-|nuORF	ENST00000361201.8_1_X:151896282-151896648:-|nuORF	ENST00000361201.8_1_X:151896282-151896648:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	473.24267578125	2	473.285069	944.555585	-1.2774	-0.00060459	-0.38175	-0.00018068	-1.6592	-0.00078526	473.28474694857147	52.513	1.6307	49.7	49.345	50.976	-2.8129					47	32	2	0	0	0	0.028476	1	3653	3653		40.573	17.05	1	43181			16389	10787	13349	13370	18278	18278					0.08108903608183482
HPQLVKFTG	9	Unmodified	_HPQLVKFTG_					0	0	0			REV__ENSG00000170396|ENST00000302277|ZNF804A	REV__ENSG00000170396|ENST00000302277|ZNF804A	MULTI-MSMS	OvCa9_classI_Rep2	2	513.7890014648438	2	513.790184	1025.56581	-0.70394	-0.00036168	-3.643	-0.0018718	-4.347	-0.0022334	513.7882058006563	39.281	1.982	36.571	35.964	37.946	-2.7097					102	39	5	0	0	0	0.51865	1	1895	1895		40.778	0.20554	1	512530	+		16390	21537	13350	13371	18279	18279					0.05405466542742943
HPQRPLVL	8	Unmodified	_HPQRPLVL_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1;ENST00000495849.5_1_2:191897681-192012929:-|nuORF;ENSG00000138378|ENST00000392320|STAT4	nc|ENSG00000115415|P42224-2|STAT1;ENST00000495849.5_1_2:191897681-192012929:-|nuORF	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.29315185546875	2	480.292894	958.571235	0.12951	6.2205E-05	-0.27977	-0.00013437	-0.15025	-7.2165E-05	480.29254615456216	61.571	1.6366	58.113	57.766	59.403	-3.4577					74	33	3	0	0	0	0.69415	1	4235	4235		44.531	0	1	321240			16391	3094;4681	13351	13372	18280	18280					0.0902919012522716
HPQRPLVL	8	Unmodified	_HPQRPLVL_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1;ENST00000495849.5_1_2:191897681-192012929:-|nuORF;ENSG00000138378|ENST00000392320|STAT4	nc|ENSG00000115415|P42224-2|STAT1;ENST00000495849.5_1_2:191897681-192012929:-|nuORF	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	480.292894	958.571235	-1.2302	-0.00059083	1.209	0.00058068	-0.021141	-1.0154E-05	480.2933301694939	60.702	1.9189	57.932	57.553	59.472	-2.7702	-0.090656	0.00058672	NaN	44.531	83	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232950			16392	3094;4681	13351	13372							0.0902919012522716
HPQYGNRPR	9	Unmodified	_HPQYGNRPR_					0	0	0			REV__ENSG00000146834|ENST00000310512|MEPCE	REV__ENSG00000146834|ENST00000310512|MEPCE	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.3234252929688	2	562.789038	1123.56352	0.95191	0.00053572	-1.2742	-0.00071708	-0.32225	-0.00018136	562.7877776394739	56.026	0.8601	52.732	52.26	53.12	-3.2944					28	16	3	0	0	0	0.027462	1	3525	3525		38.806	0	1	44999	+		16393	20029	13352	13373	18281	18281					0.006684308576495823
HPRDPNLLL	9	Unmodified	_HPRDPNLLL_					0	0	0		ENST00000525244.5_1_11:85956313-85988207:+|nuORF;nc|ENSG00000074266|O75530-3|EED;ENSG00000074266|ENST00000263360|EED;nc|ENSG00000074266|O75530-2|EED	ENST00000525244.5_1_11:85956313-85988207:+|nuORF	ENST00000525244.5_1_11:85956313-85988207:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	537.8050537109375	2	537.806365	1073.59818	-1.2521	-0.00067338	0.93955	0.0005053	-0.31254	-0.00016809	537.8066559834224	74.159	1.7758	72.188	71.745	73.521	-1.9711					97	33	4	0	0	0	0.1149	6	6059	6053;6059;6064;6071;6077;6083		93.143	43.607	1	636380			16394	1508	13353	13374	18282;18283;18284;18285;18286;18287	18283					0.0643225394574074
HPRDPNLLL	9	Unmodified	_HPRDPNLLL_					0	0	0		ENST00000525244.5_1_11:85956313-85988207:+|nuORF;nc|ENSG00000074266|O75530-3|EED;ENSG00000074266|ENST00000263360|EED;nc|ENSG00000074266|O75530-2|EED	ENST00000525244.5_1_11:85956313-85988207:+|nuORF	ENST00000525244.5_1_11:85956313-85988207:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	537.8048095703125	2	537.806365	1073.59818	0.74795	0.00040225	-1.1427	-0.00061458	-0.3948	-0.00021233	537.8056008711688	74.166	1.976	71.679	71.275	73.251	-2.4873					107	39	4	0	0	0	0.13504	3	3650	3650;3662;3669		87.696	41.724	1	604710			16395	1508	13353	13374	18288;18289;18290	18288					0.0643225394574074
HPRDPNLLL	9	Unmodified	_HPRDPNLLL_					0	0	0		ENST00000525244.5_1_11:85956313-85988207:+|nuORF;nc|ENSG00000074266|O75530-3|EED;ENSG00000074266|ENST00000263360|EED;nc|ENSG00000074266|O75530-2|EED	ENST00000525244.5_1_11:85956313-85988207:+|nuORF	ENST00000525244.5_1_11:85956313-85988207:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.8067626953125	2	537.806365	1073.59818	-0.68486	-0.00036832	-0.45911	-0.00024691	-1.144	-0.00061524	537.8060562317257	75.345	1.6274	72.114	71.726	73.353	-3.2308					84	33	4	0	0	0	0.1944	3	5944	5931;5944;5963		77.318	27.876	1	776300			16396	1508	13353	13374	18291;18292;18293	18292					0.0643225394574074
HPREKKTSKS	10	Unmodified	_HPREKKTSKS_					0	0	0		ENSG00000090615|ENST00000450791|GOLGA3;nc|ENSG00000090615|Q08378-2|GOLGA3;nc|ENSG00000090615|Q08378-4|GOLGA3	ENSG00000090615|ENST00000450791|GOLGA3	ENSG00000090615|ENST00000450791|GOLGA3	MULTI-MSMS	OvCa9_classI_Rep3	3	599.341064453125	2	599.338561	1196.66257	0.3092	0.00018532	2.3527	0.0014101	2.6619	0.0015954	599.3399137510976	92.88	1.8344	90.918	90.56	92.394	-1.9617					92	36	4	0	0	0	0.64697	1	5930	5930		36.447	4.9169	1	424340			16397	1843	13354	13375	18294	18294					0.07210409031904419
HPRELREKI	9	Unmodified	_HPRELREKI_					0	0	0		nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2	nc|ENSG00000163092|A4UGR9-2|XIRP2	nc|ENSG00000163092|A4UGR9-2|XIRP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3367309570312	2	589.343646	1176.67274	-0.99558	-0.00058674	-0.19072	-0.0001124	-1.1863	-0.00069914	589.3433618627441	145.15	3.8411	143.72	141.74	145.58	-1.4357					179	73	4	0	0	0	0.5811	1	14335	14335		34.173	3.6689	1	92509			16398	6265	13355	13376	18295	18295					0.09147016757128767
HPRGVSYPV	9	Unmodified	_HPRGVSYPV_					0	0	0		ENST00000469080.5_1_X:47104878-47106896:+|nuORF	ENST00000469080.5_1_X:47104878-47106896:+|nuORF	ENST00000469080.5_1_X:47104878-47106896:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	506.2740173339844	2	506.272158	1010.52976	1.7132	0.00086734	1.5295	0.00077434	3.2427	0.0016417	506.2727467608177	54.771	2.6321	51.6	50.779	53.411	-3.1715					173	88	3	0	0	0	0.46377	2	1429	1429;1531		45.952	2.9866	1	154000			16399	12340	13356	13377	18296;18297	18296					0.02492009365892045
HPRIASGLGL	10	Unmodified	_HPRIASGLGL_					0	0	0		ENSG00000143198|ENST00000367889|MGST3	ENSG00000143198|ENST00000367889|MGST3	ENSG00000143198|ENST00000367889|MGST3	MULTI-MSMS	OvCa9_classI_Rep2	2	510.8017272949219	2	510.801083	1019.58761	-0.67021	-0.00034234	0.53034	0.0002709	-0.13988	-7.1449E-05	510.8012511632329	76.11	2.0916	74.256	73.938	76.03	-1.854					90	39	4	0	0	0	0.43433	2	6295	6289;6295		63.534	8.5182	1	416080			16400	5020	13357	13378	18298;18299	18299					0.07860271291337995
HPRLSLHRPAL	11	Unmodified	_HPRLSLHRPAL_					0	0	0		nc|ENSG00000211890|P01877-1|IGHA2;nc|ENSG00000211895|P01876-1|IGHA1;nc|ENSG00000211890|P01877|IGHA2;nc|ENSG00000211895|P01876|IGHA1	nc|ENSG00000211890|P01877-1|IGHA2	nc|ENSG00000211890|P01877-1|IGHA2	MULTI-MSMS	OvCa9_classI_Rep3	3	432.9263610839844	3	432.926434	1295.75747	1.6734	0.00072447	-1.6835	-0.00072885	-0.010124	-4.3828E-06	432.9256048538329	64.918	2.5849	61.925	61.446	64.031	-2.9933					130	50	4	0	0	0	0.68709	1	2574	2574		34.087	3.5176	1	231790			16401	15298	13358	13379	18300	18300					0.12142387293761203
HPRSGKERDL	10	Unmodified	_HPRSGKERDL_					0	0	0		ENST00000254323.6_1_19:13942265-13942868:+|nuORF	ENST00000254323.6_1_19:13942265-13942868:+|nuORF	ENST00000254323.6_1_19:13942265-13942868:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	597.7753295898438	2	597.820535	1193.62652	0.040455	2.4185E-05	2.6208	0.0015668	2.6612	0.0015909	597.8222624332601	103.44	1.0446	101.28	100.92	101.96	-2.1637					30	19	2	0	0	0	0.026739	1	9395	9395		37.508	0	1	14465			16402	9810	13359	13380	18301	18301					0.03744951855060208
HPRSPNVLSV	10	Unmodified	_HPRSPNVLSV_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MSMS	OvCa9_classI_Rep2	2	553.30908203125	2	553.309272	1104.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.708	1	59.963	59.463	60.463	-2.7444								0	0	0	0.13099	1	4716	4716		56.434	10.462	1				16403	2095	13360	13381	18302	18302					0.055873524574280964
HPRSPNVLSV	10	Unmodified	_HPRSPNVLSV_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MSMS	OvCa9_classI_Rep2	2	553.3088989257812	2	553.309272	1104.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.746	1	60.002	59.502	60.502	-2.7444								0	0	0	0.10961	1	4720	4720		65.465	21.349	1				16404	2095	13360	13381	18303	18303					0.055873524574280964
HPRSPNVLSV	10	Unmodified	_HPRSPNVLSV_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MSMS	OvCa9_classI_Rep2	2	553.3084106445312	2	553.309272	1104.60399	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.865	1	60.12	59.62	60.62	-2.7444								0	0	0	0.1305	1	4734	4734		56.632	6.6077	1				16405	2095	13360	13381	18304	18304					0.055873524574280964
HPRSPNVLSV	10	Unmodified	_HPRSPNVLSV_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.3101196289062	2	553.309272	1104.60399	-0.040372	-2.2338E-05	-1.0339	-0.00057206	-1.0743	-0.0005944	553.3087762442907	63.767	1.9845	60.292	59.964	61.948	-3.475					66	40	2	0	0	0	0.38315	2	4502	4492;4502		70.816	21.28	1	661570			16406	2095	13360	13381	18305;18306	18306					0.055873524574280964
HPRTLSPGF	9	Unmodified	_HPRTLSPGF_					0	0	0		ENST00000569796.1_1_16:2281646-2281928:+|nuORF	ENST00000569796.1_1_16:2281646-2281928:+|nuORF	ENST00000569796.1_1_16:2281646-2281928:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	506.2727355957031	2	506.272158	1010.52976	1.7132	0.00086734	1.5295	0.00077434	3.2427	0.0016417	506.2727467608177	54.771	2.6321	51.6	50.779	53.411	-3.1715					173	88	3	0	0	0	0.59259	1	1491	1491		32.812	4.9302	1	154000			16407	13886	13361	13382	18307	18307					0.024920093659034137
HPRVGDLIL	9	Unmodified	_HPRVGDLIL_					0	0	0		nc|ENSG00000119392|Q53GS7-2|GLE1;ENSG00000119392|ENST00000309971|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	MULTI-MSMS	OvCa9_classI_Rep2	2	510.3051452636719	2	510.303458	1018.59236	1.5675	0.00079989	-1.9134	-0.00097642	-0.34593	-0.00017653	510.30234265150733	87.807	1.7201	86.376	86.04	87.76	-1.4311					94	34	4	0	0	0	0.46356	1	7680	7680		45.972	6.9508	1	558390			16408	3357	13362	13383	18308	18308					0.08381155434108223
HPRVPQAL	8	Unmodified	_HPRVPQAL_					0	0	0		ENSG00000162040|ENST00000454677|HS3ST6	ENSG00000162040|ENST00000454677|HS3ST6	ENSG00000162040|ENST00000454677|HS3ST6	MULTI-MSMS	OvCa9_classI_Rep4_	4	459.2701416015625	2	459.269419	916.524284	-0.67934	-0.000312	0.33424	0.00015351	-0.3451	-0.00015849	459.2693859903413	46.45	1.4871	43.377	43.03	44.517	-3.0724					80	28	5	0	0	0	0.67745	1	2453	2453		47.916	10.756	1	496780			16409	6152	13363	13384	18309	18309					0.06268330574084757
HPSATRIFVGL	11	Unmodified	_HPSATRIFVGL_					0	0	0		ENSG00000151117|ENST00000280734|TMEM86A	ENSG00000151117|ENST00000280734|TMEM86A	ENSG00000151117|ENST00000280734|TMEM86A	MULTI-MSMS	OvCa9_classI_Rep4_	4	599.3411865234375	2	599.340572	1196.66659	-0.11136	-6.6742E-05	-0.3939	-0.00023608	-0.50526	-0.00030282	599.3401671033429	93.404	2.0597	90.897	90.463	92.522	-2.5072					90	42	4	0	0	0	0.61983	1	8161	8161		42.864	3.6114	1	343780			16410	5534	13364	13385	18310	18310					0.07612498525600131
HPSIMRAAL	9	Oxidation (M)	_HPSIM(Oxidation (M))RAAL_		HPSIM(1)RAAL		HPSIM(66)RAAL	0	0	1		ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-MSMS	OvCa9_classI_Rep3	3	506.2735900878906	2	506.273844	1010.53313	1.7132	0.00086734	-1.7996	-0.00091107	-0.086391	-4.3737E-05	506.2727467608177	54.771	2.6321	51.6	50.779	53.411	-3.1715					173	88	3	0	0	0	0.27546	2	1433	1433;1457		65.803	14.468	1	154000			16411	3592	13365	13386	18311;18312	18311		112			0.028289361482507047
HPSIMRAAL	9	Oxidation (M)	_HPSIM(Oxidation (M))RAAL_		HPSIM(1)RAAL		HPSIM(66)RAAL	0	0	1		ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.2748107910156	2	506.273844	1010.53313	-1.2893	-0.00065275	1.4384	0.00072824	0.1491	7.5485E-05	506.2744236146134	54.354	2.0945	51.106	50.671	52.765	-3.2474					106	40	5	0	0	0	0.27546	1	3367	3367		65.803	12.452	1	1142200			16412	3592	13365	13386	18313	18313		112			0.028289361482507047
HPSIMRAAL	9	Unmodified	_HPSIMRAAL_					0	0	0		ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.2762756347656	2	498.276386	994.53822	0.48505	0.00024169	-0.5012	-0.00024974	-0.016152	-8.0481E-06	498.27598303845053	68.753	2.0444	65.939	65.611	67.655	-2.8144					81	40	3	0	0	0	0.16524	6	3011	2995;3005;3011;3017;3026;3033		82.305	32.863	1	484800			16413	3592	13365	13387	18314;18315;18316;18317;18318;18319	18316					0.04073240010859536
HPSLPASSL	9	Unmodified	_HPSLPASSL_					0	0	0		ENSG00000160741|ENST00000368633|CRTC2	ENSG00000160741|ENST00000368633|CRTC2	ENSG00000160741|ENST00000368633|CRTC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	454.7460632324219	2	454.745442	907.476331	0.39322	0.00017881	-0.90334	-0.00041079	-0.51012	-0.00023198	454.74491066172334	74.996	1.3076	71.765	71.385	72.693	-3.2308					62	26	4	0	0	0	0.27546	1	5890	5890		65.803	7.9919	1	343310			16414	6085	13366	13388	18320	18320					0.01889211863363016
HPSLPASSL	9	Unmodified	_HPSLPASSL_					0	0	0		ENSG00000160741|ENST00000368633|CRTC2	ENSG00000160741|ENST00000368633|CRTC2	ENSG00000160741|ENST00000368633|CRTC2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	454.745442	907.476331	1.0597	0.00048192	-1.422	-0.00064667	-0.36229	-0.00016475	454.7446150317758	73.909	1.5182	71.938	71.43	72.948	-1.9711	0.086681	-0.00016755	NaN	65.803	59	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97203			16415	6085	13366	13388							0.01889211863363016
HPSPVLLP	8	Unmodified	_HPSPVLLP_					0	0	0		ENST00000575978.1_1_17:78112818-78113115:-|nuORF	ENST00000575978.1_1_17:78112818-78113115:-|nuORF	ENST00000575978.1_1_17:78112818-78113115:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	430.257080078125	2	430.255446	858.496338	1.394	0.00059977	1.5001	0.00064543	2.8941	0.0012452	430.2557076296251	144.81	0.53543	144.81	144.55	145.08	0					25	10	3	0	0	0	0.72922	1	16927	16927		37.028	5.0736	1	132040			16416	13945	13367	13389	18321	18321					0.06143007594005212
HPSRLLRLFL	10	Unmodified	_HPSRLLRLFL_					0	0	0			REV__KPNA3|p.L334Ifs*9|1|0.85|ENSG00000102753|chr13:49709600-49709604|AAGAG/-|frameshift_variant	REV__KPNA3|p.L334Ifs*9|1|0.85|ENSG00000102753|chr13:49709600-49709604|AAGAG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	626.3892211914062	2	626.387857	1250.76116	-5.6586	-0.0035445	4.4262	0.0027725	-1.2324	-0.00077198	626.8920656002647	163.54	1.1058	163.31	162.97	164.08	-0.22697					56	36	2	0	0	0	0.78463	1	16693	16693		20.947	1.8434	1	65883	+		16417	17569	13368	13390	18322	18322					0.14581057067607617
HPSTMPREP	9	Unmodified	_HPSTMPREP_					0	0	0			REV__ENST00000545135.5_1_12:124428798-124428876:-|nuORF	REV__ENST00000545135.5_1_12:124428798-124428876:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	526.2514038085938	2	526.253108	1050.49166	1.8064	0.00095061	-2.5637	-0.0013492	-0.75735	-0.00039856	526.2518643155702	117.9	0.4151	117.9	117.6	118.02	0					12	8	2	0	0	0	0.53957	1	13516	13516		38.806	3.1879	1	57194	+		16418	27404	13369	13391	18323	18323					-0.03156244611091097
HPTEEELRI	9	Unmodified	_HPTEEELRI_					0	0	0		nc|ENSG00000164180|Q8NDZ6-2|TMEM161B;ENSG00000164180|ENST00000296595|TMEM161B;ENST00000503755.5_1_5:87516463-87524344:-|nuORF;ENST00000503943.5_1_5:87524260-87546470:-|nuORF;ENST00000515477.5_1_5:87517271-87564570:-|nuORF	nc|ENSG00000164180|Q8NDZ6-2|TMEM161B	nc|ENSG00000164180|Q8NDZ6-2|TMEM161B	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.7659912109375	2	562.290745	1122.56694	0.62199	0.00034974	-2.7423	-0.001542	-2.1203	-0.0011922	562.288739187362	46.513	0.47805	46.513	46.284	46.762	0					20	10	3	0	0	0	0.027462	1	3272	3272		23.042	6.5693	1	198590			16419	6427	13370	13392	18324	18324					0.010556361209864917
HPTHQSDQS	9	Unmodified	_HPTHQSDQS_					0	0	0			REV__ENSG00000116128|ENST00000234739|BCL9	REV__ENSG00000116128|ENST00000234739|BCL9	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.80126953125	2	518.725769	1035.43699	-0.71352	-0.00037012	3.5924	0.0018635	2.8788	0.0014933	518.7295459833493	86.035	0.24935	83.814	83.636	83.885	-2.2204					6	4	2	0	0	0	0.027461	1	5093	5093		40.778	15.204	1	3079.6	+		16420	18285	13371	13393	18325	18325					-0.07931540158142525
HPTITAASTDR	11	Unmodified	_HPTITAASTDR_					0	0	0		ENST00000556833.1_1_14:21923192-21923264:-|nuORF	ENST00000556833.1_1_14:21923192-21923264:-|nuORF	ENST00000556833.1_1_14:21923192-21923264:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	585.3005981445312	2	585.299101	1168.58365	-4.797	-0.0028077	1.8914	0.001107	-2.9056	-0.0017007	585.3000293392861	157.32	0.61197	157.1	156.92	157.53	-0.22696					30	19	2	0	0	0	0.72479	1	16010	16010		18.262	1.5447	1	19093			16421	13672	13372	13394	18326	18326					0.006101370069245604
HPTPTMLSI	9	Unmodified	_HPTPTMLSI_					0	0	0		nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1;ENSG00000113649|ENST00000679501|TCERG1;ENST00000507175.5_1_5:145826912-145859658:+|nuORF	nc|ENSG00000113649|O14776-2|TCERG1	nc|ENSG00000113649|O14776-2|TCERG1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.84588623046875	2	498.762778	995.511002	1.1062	0.00055175	-0.41722	-0.0002081	0.68901	0.00034365	498.76254600050424	85.684	0.84299	83.038	82.8	83.643	-2.6463					26	16	2	0	0	0	0.027462	1	7221	7221		29.15	0	1	67794			16422	2988	13373	13395	18327	18327					0.013067116798310963
HPTQKSFT	8	Unmodified	_HPTQKSFT_					0	0	0			REV__nc|ENSG00000050820|P56945-6|BCAR1	REV__nc|ENSG00000050820|P56945-6|BCAR1	MULTI-MSMS	OvCa9_classI_Rep2	2	473.24261474609375	2	473.243067	944.47158	-1.2197	-0.00057723	1.2228	0.00057867	0.0030476	1.4423E-06	473.24345691842643	53.714	1.8932	50.9	50.479	52.372	-2.8139					103	37	4	0	0	0	0.66704	1	3637	3637		50.025	5.4935	1	437470	+		16423	28716	13374	13396	18328	18328					-0.0028767227937578355
HPVCLPDKQ	9	Unmodified	_HPVCLPDKQ_					0	0	0		CON__P00735	CON__P00735	CON__P00735	MULTI-MSMS	OvCa99_classI_Rep5	1	518.7626342773438	2	518.765852	1035.51715	-1.7144	-0.00088936	-1.462	-0.00075846	-3.1764	-0.0016478	518.7648910175652	43.934	0.60721	43.934	43.608	44.215	0					26	12	3	0	0	0	0.22961	1	2938	2938		71.296	12.514	1	878600		+	16424	612	13375	13397	18329	18329					0.0008122991132495372
HPVGGLGVALW	11	Unmodified	_HPVGGLGVALW_					0	0	0		ENST00000594369.5_1_19:58987574-58987832:+|nuORF	ENST00000594369.5_1_19:58987574-58987832:+|nuORF	ENST00000594369.5_1_19:58987574-58987832:+|nuORF	MSMS	OvCa9_classI_Rep2	2	553.3093872070312	2	553.311284	1104.60801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.649	1	59.904	59.404	60.404	-2.7444								0	0	0	0.19309	1	4709	4709		40.573	1.819	1				16425	14164	13376	13398	18330	18330					0.059894419511238084
HPVSVIQF	8	Unmodified	_HPVSVIQF_					0	0	0			REV__Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|128|1|anti-sense	REV__Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|128|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.79290771484375	2	463.758352	925.502152	-0.8161	-0.00037847	-3.7122	-0.0017216	-4.5283	-0.0021	463.7565166972291	56.023	0.35529	52.729	52.464	52.819	-3.2944					10	6	2	0	0	0	0.028476	1	3531	3531		14.664	0	1	15000	+		16426	28167	13377	13399	18331	18331					0.036421061056557846
HPYPHWPP	8	Unmodified	_HPYPHWPP_					0	0	0			REV__ENST00000467160.1_1_19:19757877-19758222:-|nuORF	REV__ENST00000467160.1_1_19:19757877-19758222:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7506103515625	2	515.748319	1029.48209	3.5779	0.0018453	2.7	0.0013925	6.2779	0.0032378	515.7496284830565	132.62	1.8654	131.12	130.75	132.61	-1.5014					104	37	5	0	0	0	0.69862	1	12806	12806		43.626	8.4253	1	443820	+		16427	26199	13378	13400	18332	18332					-0.031476448343028096
HQAAIVSKI	9	Unmodified	_HQAAIVSKI_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-3|CALD1	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	483.79083251953125	2	483.790184	965.565815	-0.79709	-0.00038563	-0.0027441	-1.3276E-06	-0.79984	-0.00038695	483.7902074509702	50.014	4.0099	50.014	49.723	53.733	0					174	92	5	0	0	0	0.023079	6	3778	3754;3778;3802;3826;3850;3902		143.37	38.627	1	48940000			16428	3559	13379	13401	18333;18334;18335;18336;18337;18338	18334					0.08165466542754984
HQAAQALHL	9	Unmodified	_HQAAQALHL_					0	0	0		ENST00000468920.2_1_12:111893805-111895209:-|nuORF;nc|ENSG00000204842|Q99700-3|ATXN2;ENST00000482777.5_1_12:111893805-111908601:-|nuORF;CORO1C-ATXN2|1|fusion;nc|ENSG00000204842|Q99700-5|ATXN2;ENSG00000204842|ENST00000673436|ATXN2;nc|ENSG00000204842|Q99700-4|ATXN2;nc|ENSG00000204842|Q99700|ATXN2	ENST00000468920.2_1_12:111893805-111895209:-|nuORF	ENST00000468920.2_1_12:111893805-111895209:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	494.7704162597656	2	494.769783	987.525013	-0.75945	-0.00037575	0.55825	0.00027621	-0.2012	-9.9546E-05	494.7698870178942	52.101	0.51789	52.101	51.829	52.347	0					27	11	3	0	0	0	0.22961	1	4063	4063		71.296	5.3982	1	1131300			16429	672	13380	13402	18339	18339					0.03075125223131181
HQAAVRQQL	9	Unmodified	_HQAAVRQQL_					0	0	0		nc|ENSG00000105732|Q6ZN55-2|ZNF574;ENSG00000105732|ENST00000359044|ZNF574	nc|ENSG00000105732|Q6ZN55-2|ZNF574	nc|ENSG00000105732|Q6ZN55-2|ZNF574	MULTI-MSMS	OvCa99_classI_Rep5	1	525.7938232421875	2	525.793789	1049.57303	-1.1844	-0.00062274	0.55336	0.00029095	-0.63102	-0.00033179	525.7941399571471	34.84	0.84215	34.84	34.632	35.475	0					59	17	5	0	0	0	0.22961	1	1710	1710		71.296	15.791	1	1415900			16430	14941	13381	13403	18340	18340					0.050221991431726565
HQAAWILKA	9	Unmodified	_HQAAWILKA_					0	0	0		nc|ENSG00000165533|Q8TAM2-3|TTC8;ENSG00000165533|ENST00000380656|TTC8;nc|ENSG00000165533|Q8TAM2-6|TTC8;nc|ENSG00000165533|Q8TAM2|TTC8	nc|ENSG00000165533|Q8TAM2-3|TTC8	nc|ENSG00000165533|Q8TAM2-3|TTC8	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.7717895507812	2	519.298176	1036.5818	-2.1032	-0.0010922	-1.8142	-0.00094213	-3.9174	-0.0020343	519.2973348179424	35.826	0.39835	33.116	33.001	33.4	-2.7097					10	7	2	0	0	0	0.027462	1	1495	1495		29.15	0	1	14116			16431	6576	13382	13404	18341	18341					0.0649717277963191
HQAGPVIKV	9	Unmodified	_HQAGPVIKV_					0	0	0		ENST00000538134.1_1_11:114271453-114272668:+|nuORF;nc|ENSG00000076053|Q9Y580|RBM7;ENSG00000076053|ENST00000375490|RBM7	ENST00000538134.1_1_11:114271453-114272668:+|nuORF	ENST00000538134.1_1_11:114271453-114272668:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	474.78594970703125	2	474.784902	947.55525	-0.53278	-0.00025296	0.012071	5.731E-06	-0.52071	-0.00024723	474.78491081367366	51.932	1.8481	51.932	51.627	53.475	0					94	42	4	0	0	0	0.10363	3	4048	4022;4048;4073		96.19	30.387	1	17327000			16432	1549	13383	13405	18342;18343;18344	18343					0.07937483888315455
HQARLEESY	9	Unmodified	_HQARLEESY_					0	0	0			REV__chr1:156134528-156134904|141|58.75|0.52|6.83|+|0|LMNA,None|1	REV__chr1:156134528-156134904|141|58.75|0.52|6.83|+|0|LMNA,None|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.8267822265625	2	566.772719	1131.53089	2.6404	0.0014965	1.9492	0.0011047	4.5896	0.0026012	566.7739763907995	91.631	0.58314	91.631	91.296	91.879	0					19	13	2	0	0	0	0.027462	1	9880	9880		37.159	8.0096	1	262330	+		16433	15806	13384	13406	18345	18345					-0.029618210558510327
HQCGLRFL	8	Carbamidomethyl (C)	_HQC(Carbamidomethyl (C))GLRFL_	HQC(1)GLRFL		HQC(42)GLRFL		0	1	0			REV__chr11:8682816-8683188|203|12.23|0.07|7.44|+|2|RPL27A,None|1	REV__chr11:8682816-8683188|203|12.23|0.07|7.44|+|2|RPL27A,None|1	MSMS	OvCa9_classI_Rep4_	4	515.7650146484375	2	515.766186	1029.51782	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.91	1	51.662	51.162	52.162	-3.2474								0	0	0	0.30129	1	3431	3431		42.474	6.8562	1		+		16434	15872	13385	13407	18346	18346	181				0.004240693510610072
HQDLSQKI	8	Unmodified	_HQDLSQKI_					0	0	0		ENSG00000229937|ENST00000506618|PRPS1L1;PRPS1|p.H283Lfs*9|1|0.25|ENSG00000147224|chrX:107647748-107647749|-/T|frameshift_variant;ENSG00000147224|ENST00000372435|PRPS1;PRPS1L1|p.Q38Rfs*30|1|0.04|ENSG00000229937|chr7:18027671-18027671|G/-|frameshift_variant;PRPS1|p.L111Hfs*29|1|0.04|ENSG00000147224|chrX:107640926-107640927|-/A|frameshift_variant;PRPS1|p.R184Tfs*3|1|0.06|ENSG00000147224|chrX:107645196-107645197|-/CG|frameshift_variant	ENSG00000229937|ENST00000506618|PRPS1L1	ENSG00000229937|ENST00000506618|PRPS1L1	MULTI-MSMS	OvCa99_classI_Rep5	1	484.76153564453125	2	484.761623	967.508694	-0.30994	-0.00015025	0.1948	9.4433E-05	-0.11514	-5.5815E-05	484.761607603939	40.733	0.85307	40.733	40.432	41.285	0					41	18	4	0	0	0	0.25383	1	2501	2501		115.49	36.043	1	846630			16435	9284	13386	13408	18347	18347					0.023639992663675002
HQGDSKLLI	9	Unmodified	_HQGDSKLLI_					0	0	0		ENSG00000121749|ENST00000485960|TBC1D15;nc|ENSG00000121749|Q8TC07-3|TBC1D15;nc|ENSG00000121749|Q8TC07|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	ENSG00000121749|ENST00000485960|TBC1D15	MULTI-MSMS	OvCa99_classI_Rep5	1	505.7864990234375	2	505.785099	1009.55564	-0.4341	-0.00021956	0.27098	0.00013706	-0.16312	-8.2502E-05	505.7850395485355	58.961	0.95604	58.961	58.655	59.611	0					91	24	7	0	0	0	0.084918	1	5034	5034		101.25	21.54	1	6143600			16436	3497	13387	13409	18348	18348					0.051248588175326404
HQGMKLLLSG	10	Unmodified	_HQGMKLLLSG_					0	0	0			REV__ENSG00000153201|ENST00000283195|RANBP2	REV__ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	OvCa99_classI_Rep5	1	542.3030395507812	2	542.302601	1082.59065	-0.10431	-5.6567E-05	3.6546	0.0019819	3.5503	0.0019253	542.3044653026915	22.311	0.51794	22.311	22.142	22.66	0					29	11	4	0	0	0	0.55359	1	193	193		47.657	3.5405	1	462350	+		16437	20326	13388	13410	18349	18349					0.052657783538279546
HQGPHRNL	8	Unmodified	_HQGPHRNL_					0	0	0		nc|ENSG00000214655|A7E2V4-4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4-5|ZSWIM8;nc|ENSG00000214655|A7E2V4-2|ZSWIM8;VCL-KIAA0913|3|fusion;VCL-KIAA0913|1|fusion;VCL-KIAA0913|2|fusion;ENST00000433366.6_1_10:75557251-75561274:+|nuORF	nc|ENSG00000214655|A7E2V4-4|ZSWIM8	nc|ENSG00000214655|A7E2V4-4|ZSWIM8	MULTI-MSMS	OvCa99_classI_Rep5	1	479.7522277832031	2	479.751924	957.489296	-0.4696	-0.00022529	0.43932	0.00021076	-0.030284	-1.4529E-05	479.75196425492345	25.117	0.85551	25.117	24.888	25.743	0					35	16	4	0	0	0	0.73626	1	547	547		33.516	0	1	672340			16438	9177	13389	13411	18350	18350					0.008850877661416234
HQHGHNHHH	9	Unmodified	_HQHGHNHHH_					0	0	0			REV__ENST00000509276.5_1_5:42801070-42808275:-|nuORF	REV__ENST00000509276.5_1_5:42801070-42808275:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.80908203125	2	570.750779	1139.487	-0.28342	-0.00016176	-0.059236	-3.3809E-05	-0.34266	-0.00019557	570.7510331465301	29.966	0.49891	29.966	29.835	30.334	0					11	9	2	0	0	0	0.027462	1	1100	1100		37.159	0	1	30909	+		16439	23495	13390	13412	18351	18351					-0.07715947918950405
HQHSVTEEI	9	Unmodified	_HQHSVTEEI_					0	0	0		ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2	ENSG00000024048|ENST00000372901|UBR2	ENSG00000024048|ENST00000372901|UBR2	MULTI-MSMS	OvCa99_classI_Rep5	1	540.2597045898438	2	540.259445	1078.50434	-0.48624	-0.00026269	-0.22797	-0.00012316	-0.7142	-0.00038585	540.2591651911832	42.513	0.68423	42.513	42.329	43.014	0					37	15	3	0	0	0	0.19758	1	2735	2735		76.774	4.8967	1	1165900			16440	1043	13391	13413	18352	18352					-0.03177509947181534
HQIHKQNKI	9	Unmodified	_HQIHKQNKI_					0	0	0		nc|ENSG00000130830|Q00013-3|MPP1;ENSG00000130830|ENST00000369534|MPP1;nc|ENSG00000130830|Q00013-2|MPP1;ENST00000491955.5_1_X:154007454-154010087:-|nuORF	nc|ENSG00000130830|Q00013-3|MPP1	nc|ENSG00000130830|Q00013-3|MPP1	MULTI-MSMS	OvCa99_classI_Rep5	1	573.3307495117188	2	573.330539	1144.64652	-0.54896	-0.00031474	0.6223	0.00035679	0.073342	4.2049E-05	573.3308041865716	24.077	0.44928	24.077	23.937	24.386	0					14	8	3	0	0	0	0.6653	1	403	403		24.203	3.2558	1	44629			16441	4021	13392	13414	18353	18353					0.07998747585634192
HQILQQQI	8	Unmodified	_HQILQQQI_					0	0	0		ENST00000488337.5_1_11:116730256-116740867:-|nuORF;SIK3|p.S1029Vfs*11|1|0.11|ENSG00000160584|chr11:116858236-116858236|T/-|frameshift_variant;SIK3|p.Q1037Tfs*15|1|0.07|ENSG00000160584|chr11:116858213-116858214|-/C|frameshift_variant;nc|ENSG00000160584|Q9Y2K2-7|SIK3;nc|ENSG00000160584|Q9Y2K2-8|SIK3;nc|ENSG00000160584|Q9Y2K2|SIK3;ENSG00000160584|ENST00000445177|SIK3	ENST00000488337.5_1_11:116730256-116740867:-|nuORF	ENST00000488337.5_1_11:116730256-116740867:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	504.2862548828125	2	504.285266	1006.55598	-0.36442	-0.00018377	0.51924	0.00026184	0.15482	7.8074E-05	504.2853570046781	67.662	0.58886	67.662	67.448	68.037	0					35	14	3	0	0	0	0.35163	1	6342	6342		97.473	12.113	1	2277900			16442	6072	13393	13415	18354	18354					0.0529627853737793
HQILQQQI	8	Unmodified	_HQILQQQI_					0	0	0		ENST00000488337.5_1_11:116730256-116740867:-|nuORF;SIK3|p.S1029Vfs*11|1|0.11|ENSG00000160584|chr11:116858236-116858236|T/-|frameshift_variant;SIK3|p.Q1037Tfs*15|1|0.07|ENSG00000160584|chr11:116858213-116858214|-/C|frameshift_variant;nc|ENSG00000160584|Q9Y2K2-7|SIK3;nc|ENSG00000160584|Q9Y2K2-8|SIK3;nc|ENSG00000160584|Q9Y2K2|SIK3;ENSG00000160584|ENST00000445177|SIK3	ENST00000488337.5_1_11:116730256-116740867:-|nuORF	ENST00000488337.5_1_11:116730256-116740867:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	504.285266	1006.55598	-0.68381	-0.00034483	1.7804	0.00089783	1.0966	0.00055299	504.2859881491263	69.857	0.49739	67.287	67.115	67.613	-2.5707	-0.195	0.00072152	NaN	97.473	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29448			16443	6072	13393	13415							0.0529627853737793
HQILQQQI	8	Unmodified	_HQILQQQI_					0	0	0		ENST00000488337.5_1_11:116730256-116740867:-|nuORF;SIK3|p.S1029Vfs*11|1|0.11|ENSG00000160584|chr11:116858236-116858236|T/-|frameshift_variant;SIK3|p.Q1037Tfs*15|1|0.07|ENSG00000160584|chr11:116858213-116858214|-/C|frameshift_variant;nc|ENSG00000160584|Q9Y2K2-7|SIK3;nc|ENSG00000160584|Q9Y2K2-8|SIK3;nc|ENSG00000160584|Q9Y2K2|SIK3;ENSG00000160584|ENST00000445177|SIK3	ENST00000488337.5_1_11:116730256-116740867:-|nuORF	ENST00000488337.5_1_11:116730256-116740867:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	504.285266	1006.55598	-1.1455	-0.00057765	2.0167	0.001017	0.87123	0.00043935	504.28649503084	70.953	0.47331	67.497	67.155	67.628	-3.4563	0.015266	0.00095986	NaN	97.473	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33060			16444	6072	13393	13415							0.0529627853737793
HQINLIKV	8	Unmodified	_HQINLIKV_					0	0	0		ENST00000492017.3_1_15:90749834-90750065:+|nuORF;ENSG00000112306|ENST00000230050|RPS12	ENST00000492017.3_1_15:90749834-90750065:+|nuORF	ENST00000492017.3_1_15:90749834-90750065:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	482.8009033203125	2	482.800552	963.58655	-0.0053509	-2.5834E-06	0.94625	0.00045685	0.9409	0.00045427	482.80044339541575	70.604	0.74039	70.604	70.328	71.068	0					32	18	3	0	0	0	0.67745	1	6788	6788		47.916	5.4411	1	1438100			16445	2897	13394	13416	18355	18355					0.10330056922407493
HQIVNISR	8	Unmodified	_HQIVNISR_					0	0	0			REV__L1PA2_dup1619|chr5:71851116-71854174:+|2.376726425342643|0.0208621851436049|6.83|429.0|81|3|sense	REV__L1PA2_dup1619|chr5:71851116-71854174:+|2.376726425342643|0.0208621851436049|6.83|429.0|81|3|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	483.7779235839844	2	483.777608	965.540663	-0.44367	-0.00021464	-0.16159	-7.8175E-05	-0.60526	-0.00029281	483.7775128041347	39.216	1.0879	39.216	38.972	40.06	0					48	24	3	0	0	0	0.35821	1	2284	2284		96.19	10.831	1	2243300	+		16446	28477	13395	13417	18356	18356					0.05651411740188905
HQKQEGDLE	9	Unmodified	_HQKQEGDLE_					0	0	0			REV__nc|ENSG00000002079|Q9H6N6|MYH16	REV__nc|ENSG00000002079|Q9H6N6|MYH16	MULTI-MSMS	OvCa99_classI_Rep5	1	542.2584228515625	2	542.256902	1082.49925	1.0087	0.00054695	2.6798	0.0014531	3.6885	0.0020001	542.2583161462927	156.44	0.7052	156.44	156.14	156.85	0					40	13	5	0	0	0	0.40667	1	18316	18316		51.335	1.8939	1	174650	+		16447	28700	13396	13418	18357	18357					-0.03869813809819789
HQLGPGLRS	9	Unmodified	_HQLGPGLRS_					0	0	0		nc|ENSG00000130204|O96008-2|TOMM40;ENSG00000130204|ENST00000426677|TOMM40;chr19:44891314-44891410|429|42.44|0.95|5.48|+|ENST00000252487|TOMM40,TOMM40	nc|ENSG00000130204|O96008-2|TOMM40	nc|ENSG00000130204|O96008-2|TOMM40	MULTI-MSMS	OvCa99_classI_Rep5	1	482.76953125	2	482.769783	963.525013	-0.2885	-0.00013928	-0.20447	-9.8713E-05	-0.49298	-0.00023799	482.76970640799556	41.206	0.66772	41.206	40.969	41.637	0					27	14	3	0	0	0	0.35444	1	2564	2564		56.721	3.3696	1	269620			16448	417	13397	13419	18358	18358					0.04179125223140545
HQLGPGLRS	9	Unmodified	_HQLGPGLRS_					0	0	0		nc|ENSG00000130204|O96008-2|TOMM40;ENSG00000130204|ENST00000426677|TOMM40;chr19:44891314-44891410|429|42.44|0.95|5.48|+|ENST00000252487|TOMM40,TOMM40	nc|ENSG00000130204|O96008-2|TOMM40	nc|ENSG00000130204|O96008-2|TOMM40	MULTI-MATCH	OvCa9_classI_Rep2	2		2	482.769783	963.525013	0.31276	0.00015099	-0.54405	-0.00026265	-0.23129	-0.00011166	482.7697795600003	43.625	0.19751	40.915	40.758	40.955	-2.7097	-0.14544	-0.00029852	NaN	56.721	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6955.1			16449	417	13397	13419							0.04179125223140545
HQLHLQQQL	9	Unmodified	_HQLHLQQQL_					0	0	0		nc|ENSG00000188483|Q5T953-2|IER5L;ENSG00000188483|ENST00000372491|IER5L	nc|ENSG00000188483|Q5T953-2|IER5L	nc|ENSG00000188483|Q5T953-2|IER5L	MULTI-MSMS	OvCa99_classI_Rep5	1	572.8161010742188	2	572.814722	1143.61489	0.010759	6.1628E-06	-0.10656	-6.1038E-05	-0.095799	-5.4875E-05	572.8146068960444	58.169	1.2206	58.169	57.899	59.12	0					91	29	5	0	0	0	0.015391	1	4918	4918		152.47	64.294	1	11807000			16450	8472	13398	13420	18359	18359					0.048827548317149194
HQLHLQQQL	9	Unmodified	_HQLHLQQQL_					0	0	0		nc|ENSG00000188483|Q5T953-2|IER5L;ENSG00000188483|ENST00000372491|IER5L	nc|ENSG00000188483|Q5T953-2|IER5L	nc|ENSG00000188483|Q5T953-2|IER5L	MULTI-MATCH	OvCa9_classI_Rep2	2		2	572.814722	1143.61489	-1.9681	-0.0011274	0.82586	0.00047307	-1.1423	-0.0006543	573.3164969529107	60.956	0.37233	58.186	58.029	58.402	-2.7702	-0.033189	0.001055	NaN	152.47	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13111			16451	8472	13398	13420							0.048827548317149194
HQLHVKPQTG	10	Unmodified	_HQLHVKPQTG_					0	0	0		ENST00000423260.1_1_6:16761385-16762598:+|nuORF	ENST00000423260.1_1_6:16761385-16762598:+|nuORF	ENST00000423260.1_1_6:16761385-16762598:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	572.81689453125	2	572.814722	1143.61489	0.010759	6.1628E-06	-0.10656	-6.1038E-05	-0.095799	-5.4875E-05	572.8146068960444	58.169	1.2206	58.169	57.899	59.12	0					91	29	5	0	0	0	0.28422	1	4949	4949		82.75	5.4329	1	11807000			16452	11702	13399	13421	18360	18360					0.04882754831692182
HQLIYGVLI	9	Unmodified	_HQLIYGVLI_					0	0	0			REV__tr|A0A553SR06|A0A553SR06_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00120PE=4SV=1	REV__tr|A0A553SR06|A0A553SR06_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00120PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	528.3154907226562	2	528.316035	1054.61752	1.0326	0.00054552	-1.4398	-0.00076065	-0.4072	-0.00021513	528.3152571628624	126.22	1.3606	125.15	124.86	126.22	-1.0715					51	25	3	0	0	0	0.59983	1	9860	9860		31.955	1.6371	1	77869	+		16453	30677	13400	13422	18361	18361					0.09239210236660256
HQLLARGG	8	Unmodified	_HQLLARGG_					0	0	0			REV__ENST00000481661.1_1_14:59931594-59931975:-|nuORF	REV__ENST00000481661.1_1_14:59931594-59931975:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	426.2458190917969	2	426.245944	850.477334	-1.1759	-0.00050123	1.2849	0.00054769	0.10901	4.6463E-05	426.2464135300909	139.12	1.5749	138.06	137.54	139.11	-1.0595					80	31	4	0	0	0	0.74595	1	11444	11444		14.664	0	1	422340	+		16454	26483	13401	13423	18362	18362					0.046114710229517186
HQLLKQLYE	9	Unmodified	_HQLLKQLYE_					0	0	0			REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14	REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14	MULTI-SECPEP	OvCa9_classI_Rep3	3	585.3494262695312	2	586.327131	1170.63971	-1.6517	-0.00096841	1.3644	0.00079999	-0.28725	-0.00016842	586.3277897205008	73.873	0.54678	71.385	71.024	71.571	-2.4873					19	10	3	0	0	0	0.027462	1	3588	3588		29.15	0	1	30530	+		16455	19274	13402	13424	18363	18363					0.06121389914437714
HQLLRLALGSN	11	Unmodified	_HQLLRLALGSN_					0	0	0			REV__ENSG00000133858|ENST00000378743|ZFC3H1	REV__ENSG00000133858|ENST00000378743|ZFC3H1	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3558349609375	2	611.356754	1220.69895	-2.725	-0.001666	1.4566	0.0008905	-1.2684	-0.00077546	611.3575283211214	150.83	4.6872	149.39	148.02	152.71	-1.4344					404	109	6	0	0	0	0.66495	1	14887	14887		38.754	10.672	1	435030	+		16456	19161	13403	13425	18364	18364					0.09743285928584555
HQLPLPHNV	9	Unmodified	_HQLPLPHNV_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MULTI-MSMS	OvCa99_classI_Rep5	1	527.7948608398438	2	527.793258	1053.57196	-1.1422	-0.00060287	0.72229	0.00038122	-0.41995	-0.00022165	527.7934099429705	65.731	0.67442	65.731	65.309	65.984	0					58	16	5	0	0	0	0.062324	2	6040	6011;6040		111.65	33.479	1	16471000			16457	2095	13404	13426	18365;18366	18366					0.04731984774275588
HQLRVLKQSR	10	Unmodified	_HQLRVLKQSR_					0	0	0		tr|A0A7D6ZVR5|A0A7D6ZVR5_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15970PE=4SV=1	tr|A0A7D6ZVR5|A0A7D6ZVR5_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15970PE=4SV=1	tr|A0A7D6ZVR5|A0A7D6ZVR5_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15970PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	421.7437744140625	3	422.258072	1263.75239	0.40876	0.0001726	3.1316	0.0013223	3.5404	0.001495	422.2591979352439	71.75	0.70044	71.75	71.507	72.208	0					35	16	3	0	0	0	0.027165	1	6967	6967		20.03	0	1	861980			16458	35811	13405	13427	18367	18367					0.13106083431102888
HQLSIKWN	8	Unmodified	_HQLSIKWN_					0	0	0			REV__ENST00000327134.7_1_3:196467014-196509572:+|nuORF	REV__ENST00000327134.7_1_3:196467014-196509572:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.8312377929688	2	513.279983	1024.54541	-0.74487	-0.00038233	-3.1047	-0.0015936	-3.8496	-0.0019759	513.2784559049302	49.406	0.60427	49.406	49.119	49.723	0					29	13	3	0	0	0	0.028476	1	3722	3722		38.806	5.2906	1	454350	+		16459	24495	13406	13428	18368	18368					0.03412295882935723
HQNHLIVKV	9	Unmodified	_HQNHLIVKV_					0	0	0		nc|ENSG00000102908|O94916-2|NFAT5;nc|ENSG00000102908|O94916|NFAT5;nc|ENSG00000102908|O94916-4|NFAT5;ENSG00000102908|ENST00000349945|NFAT5	nc|ENSG00000102908|O94916-2|NFAT5	nc|ENSG00000102908|O94916-2|NFAT5	MSMS	OvCa99_classI_Rep5	1	544.3214111328125	2	544.322183	1086.62981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.063	1	46.063	45.563	46.563	0								0	0	0	0.022622	1	3227	3227		96.19	40.686	1				16460	2267	13407	13429	18369	18369					0.08996246699712174
HQPLNKENKE	10	Unmodified	_HQPLNKENKE_					0	0	0			REV__ENSG00000138756|ENST00000502613|BMP2K	REV__ENSG00000138756|ENST00000502613|BMP2K	MULTI-MSMS	OvCa99_classI_Rep5	1	618.818603515625	2	618.820201	1235.62585	0.91929	0.00056887	-4.346	-0.0026894	-3.4267	-0.0021205	618.817489083801	142.93	2.1583	142.93	142.49	144.64	0					116	43	5	0	0	0	0.72319	1	16748	16748		27.882	3.3631	1	3336600	+		16461	19567	13408	13430	18370	18370					0.017461124153442142
HQPPNGYGP	9	Unmodified	_HQPPNGYGP_					0	0	0		ENSG00000262152|ENST00000573315|GREP1	ENSG00000262152|ENST00000573315|GREP1	ENSG00000262152|ENST00000573315|GREP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.7779235839844	2	483.725041	965.435529	-0.43967	-0.00021268	-1.0566	-0.0005111	-1.4963	-0.00072379	483.72438219375744	39.251	0.40261	39.251	39.017	39.42	0					14	8	2	0	0	0	0.027417	1	2284	2284		55.504	0	1	100150			16462	9507	13409	13431	18371	18371					-0.048571294562407274
HQQLQARLLA	10	Unmodified	_HQQLQARLLA_					0	0	0			REV__ENST00000594064.5_1_19:35769874-35770156:+|nuORF	REV__ENST00000594064.5_1_19:35769874-35770156:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3405151367188	2	589.343646	1176.67274	-4.3129	-0.0025418	3.0093	0.0017735	-1.3036	-0.00076827	589.3453728975387	144.79	3.9151	143.81	141.71	145.63	-0.97299					242	78	5	0	0	0	0.7759	1	12152	12152		21.96	0	1	192050	+		16463	17750	13410	13432	18372	18372					0.09147016757151505
HQQLSWTLL	9	Unmodified	_HQQLSWTLL_					0	0	0		ENST00000497613.2_1_8:145667587-145667875:-|nuORF	ENST00000497613.2_1_8:145667587-145667875:-|nuORF	ENST00000497613.2_1_8:145667587-145667875:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	563.7944946289062	2	563.306198	1124.59784	2.0047	0.0011293	-3.255	-0.0018335	-1.2502	-0.00070426	563.3044140525927	88.083	0.14801	86.715	86.592	86.74	-1.3676					4	2	2	0	0	0	0.027462	1	7691	7691		23.042	6.5693	1	7536.9			16464	12812	13411	13433	18373	18373					0.0405283422589946
HQQYRLGLG	9	Unmodified	_HQQYRLGLG_					0	0	0		ENST00000328249.3_2_1:43295744-43296215:+|nuORF	ENST00000328249.3_2_1:43295744-43296215:+|nuORF	ENST00000328249.3_2_1:43295744-43296215:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	536.2877197265625	2	536.28834	1070.56213	-0.42127	-0.00022592	0.066796	3.5822E-05	-0.35448	-0.0001901	536.2882005284334	42.625	0.64153	42.625	42.372	43.014	0					24	14	2	0	0	0	0.19716	1	2758	2758		76.847	7.219	1	750940			16465	10420	13412	13434	18374	18374					0.029667967688737917
HQRAVRICP	9	Unmodified	_HQRAVRICP_					0	0	0		ENST00000368474.8_1_1:154573570-154573651:-|nuORF	ENST00000368474.8_1_1:154573570-154573651:-|nuORF	ENST00000368474.8_1_1:154573570-154573651:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	540.2981567382812	2	540.298185	1078.58182	-1.8908	-0.0010216	1.5096	0.00081564	-0.38116	-0.00020594	540.2989536670705	38.535	2.9688	35.825	35.469	38.438	-2.7097					158	59	5	0	0	0	0.61208	1	1894	1894		30.504	0	1	1380400			16466	10873	13413	13435	18375	18375					0.04566849508000814
HQRFYSAF	8	Unmodified	_HQRFYSAF_					0	0	0			REV__ENST00000251241.8_1_17:57684578-57684656:+|nuORF	REV__ENST00000251241.8_1_17:57684578-57684656:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.7901000976562	2	528.256508	1054.49846	-1.4663	-0.00077458	-3.0354	-0.0016035	-4.5017	-0.0023781	528.2543759115844	70.753	0.52975	67.283	66.896	67.426	-3.47					13	10	2	0	0	0	0.028476	1	5329	5329		52.299	18.784	1	27693	+		16467	23864	13414	13436	18376	18376					-0.02660563668200666
HQRILGRSAE	10	Unmodified	_HQRILGRSAE_					0	0	0			REV__L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|105|3|sense	REV__L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|105|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.7649536132812	2	583.823078	1165.6316	-0.31131	-0.00018175	-0.88823	-0.00051857	-1.1995	-0.00070032	583.822421564775	52.935	0.17031	52.935	52.873	53.043	0					8	3	3	0	0	0	0.026994	1	4193	4193		25.574	4.6271	1	377560	+		16468	28515	13415	13437	18377	18377					0.055412557176850896
HQRILGRSAE	10	Unmodified	_HQRILGRSAE_					0	0	0			REV__L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|105|3|sense	REV__L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|105|3|sense	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	583.823078	1165.6316	-1.0946	-0.00063905	2.5155	0.0014686	1.4209	0.00082954	584.3262288973485	56.088	0.25265	52.794	52.617	52.87	-3.2944	-0.07072	0.001364	NaN	45.972	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14370	+		16469	28515	13415	13437							0.055412557176850896
HQRITEEL	8	Unmodified	_HQRITEEL_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	OvCa99_classI_Rep5	1	513.27294921875	2	513.272355	1024.53016	-0.50659	-0.00026002	0.20787	0.00010669	-0.29873	-0.00015333	513.27234558237	48.181	0.73328	48.181	47.897	48.63	0					48	16	4	0	0	0	0.53252	1	3511	3511		74.255	5.4682	1	3225200			16470	5904	13416	13438	18378	18378					0.01887384295105221
HQRLEPATL	9	Unmodified	_HQRLEPATL_					0	0	0		SEC22A|p.W277Cfs*7|1|0.08|ENSG00000121542|chr3:123271628-123271628|G/-|frameshift_variant;ENSG00000121542|ENST00000492595|SEC22A	SEC22A|p.W277Cfs*7|1|0.08|ENSG00000121542|chr3:123271628-123271628|G/-|frameshift_variant	SEC22A|p.W277Cfs*7|1|0.08|ENSG00000121542|chr3:123271628-123271628|G/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	532.7944946289062	2	532.795998	1063.57744	-0.42027	-0.00022392	-0.98762	-0.0005262	-1.4079	-0.00075012	532.7953350696265	53.863	0.82466	53.863	53.389	54.214	0					42	19	3	0	0	0	0.22621	1	4302	4302		71.877	23.962	1	2419600			16471	3488	13417	13439	18379	18379					0.048196635660815446
HQRPGMAVNGL	11	Unmodified	_HQRPGMAVNGL_					0	0	0			REV__nc|ENSG00000117713|O14497-3|ARID1A	REV__nc|ENSG00000117713|O14497-3|ARID1A	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.7672729492188	2	590.306207	1178.59786	1.58	0.00093271	3.392	0.0020023	4.9721	0.002935	590.307879825211	148.88	0.34618	148.88	148.57	148.92	0					9	6	2	0	0	0	0.025746	1	17403	17403		25.574	10.709	1	17593	+		16472	18366	13418	13440	18380	18380					0.015705109542750506
HQSDLTERP	9	Unmodified	_HQSDLTERP_					0	0	0		ENSG00000221866|ENST00000321063|PLXNA4	ENSG00000221866|ENST00000321063|PLXNA4	ENSG00000221866|ENST00000321063|PLXNA4	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2872924804688	2	541.764894	1081.51524	-0.25234	-0.00013671	3.3875	0.0018352	3.1351	0.0016985	541.7668352116066	61.134	0.64172	61.134	60.859	61.501	0					18	14	2	0	0	0	0.027462	1	5392	5392		34.173	0	1	495640			16473	9231	13419	13441	18381	18381					-0.022261075729147706
HQSGVIRVLS	10	Unmodified	_HQSGVIRVLS_					0	0	0		nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-SECPEP	OvCa9_classI_Rep2	2	548.2955322265625	2	548.317097	1094.61964	-1.3636	-0.00074767	3.0277	0.0016601	1.6641	0.00091246	548.3170863838374	34.479	0.24773	31.77	31.612	31.86	-2.7097					6	4	2	0	0	0	0.02676	1	1311	1311		41.427	8.6142	1	9684			16474	7235	13420	13442	18382	18382					0.07611638974481139
HQSHLILRA	9	Unmodified	_HQSHLILRA_					0	0	0		nc|ENSG00000163832|Q0PNE2-2|ELP6;ENSG00000163832|ENST00000296149|ELP6	nc|ENSG00000163832|Q0PNE2-2|ELP6	nc|ENSG00000163832|Q0PNE2-2|ELP6	MULTI-MSMS	OvCa99_classI_Rep5	1	537.8118896484375	2	537.811982	1073.60941	-0.58895	-0.00031674	-0.1823	-9.8045E-05	-0.77125	-0.00041479	537.8118624034297	41.616	0.86694	41.616	41.375	42.242	0					50	19	4	0	0	0	0.025955	2	2611	2611;2636		139.97	65.805	1	1613900			16475	15141	13421	13443	18383;18384	18383					0.07555076039898267
HQSLARHKPK	10	Unmodified	_HQSLARHKPK_					0	0	0			REV__ENSG00000131781|ENST00000254090|FMO5	REV__ENSG00000131781|ENST00000254090|FMO5	MULTI-SECPEP	OvCa9_classI_Rep2	2	401.6958923339844	3	401.235267	1200.68397	-0.74626	-0.00029943	-2.1646	-0.00086852	-2.9109	-0.0011679	401.2342470268817	37.179	0.64076	34.469	34.238	34.879	-2.7097					18	12	2	0	0	0	0.026867	1	1650	1650		11.097	0	1	27331	+		16476	19035	13422	13444	18385	18385					0.09165838851254193
HQTKLYLL	8	Unmodified	_HQTKLYLL_					0	0	0		nc|ENSG00000076242|P40692-2|MLH1;nc|ENSG00000076242|P40692-3|MLH1;ENSG00000076242|ENST00000231790|MLH1	nc|ENSG00000076242|P40692-2|MLH1	nc|ENSG00000076242|P40692-2|MLH1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.30352783203125	2	508.300384	1014.58622	2.6057	0.0013245	-0.26483	-0.00013462	2.3409	0.0011899	508.30008451605755	75.461	0.9061	75.461	75.209	76.115	0					47	22	3	0	0	0	0.50747	1	7516	7516		76.774	25.439	1	2059600			16477	1552	13423	13445	18386	18386					0.07950637202554844
HQTQVSQRL	9	Unmodified	_HQTQVSQRL_					0	0	0		TBRG4|p.I596Dfs*8|1|0.09|ENSG00000136270|chr7:45101267-45101268|-/T|frameshift_variant;ENSG00000136270|ENST00000258770|TBRG4;ENST00000488222.5_1_7:45142883-45145249:-|nuORF;ENST00000484326.1_1_7:45143607-45145060:-|nuORF	TBRG4|p.I596Dfs*8|1|0.09|ENSG00000136270|chr7:45101267-45101268|-/T|frameshift_variant	TBRG4|p.I596Dfs*8|1|0.09|ENSG00000136270|chr7:45101267-45101268|-/T|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	548.7962646484375	2	548.796529	1095.5785	-0.77267	-0.00042404	0.42273	0.00023199	-0.34993	-0.00019204	548.7966707165407	35.123	0.7952	35.123	34.957	35.753	0					36	16	4	0	0	0	0.094616	1	1746	1746		98.629	24.374	1	818120			16478	4479	13424	13446	18387	18387					0.034538779349986726
HQVNVTGYF	9	Unmodified	_HQVNVTGYF_					0	0	0		tr|A0A7D6VUP1|A0A7D6VUP1_9CLOTPeptidoglycan-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02375PE=4SV=1	tr|A0A7D6VUP1|A0A7D6VUP1_9CLOTPeptidoglycan-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02375PE=4SV=1	tr|A0A7D6VUP1|A0A7D6VUP1_9CLOTPeptidoglycan-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02375PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	532.762451171875	2	532.761623	1063.50869	1.0974	0.00058466	1.9349	0.0010308	3.0323	0.0016155	532.7625104763312	113.64	2.2165	112.57	112.01	114.22	-1.0753					113	43	4	0	0	0	0.56889	1	8384	8384		35.618	2.1027	1	496900			16479	35195	13425	13447	18388	18388					-0.020520007336244817
HQVVHHVV	8	Unmodified	_HQVVHHVV_					0	0	0		nc|ENSG00000116455|Q9BQA1-2|WDR77;ENSG00000116455|ENST00000235090|WDR77	nc|ENSG00000116455|Q9BQA1-2|WDR77	nc|ENSG00000116455|Q9BQA1-2|WDR77	MULTI-MSMS	OvCa99_classI_Rep5	1	477.7669677734375	2	477.767043	953.519533	-0.072554	-3.4664E-05	0.20019	9.5645E-05	0.12764	6.0981E-05	477.76700081540366	30.165	0.54755	30.165	29.935	30.483	0					27	10	4	0	0	0	0.72922	1	1141	1141		37.028	11.578	1	251230			16480	3178	13426	13448	18389	18389					0.04091446431334589
HQWDIGVLTQ	10	Unmodified	_HQWDIGVLTQ_					0	0	0			REV__nc|ENSG00000024048|Q8IWV8|UBR2	REV__nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	OvCa9_classI_Rep2	2	598.8082275390625	2	598.806562	1195.59857	-0.27081	-0.00016216	3.8286	0.0022926	3.5578	0.0021304	598.8089070417255	110.82	1.5782	110.68	110.34	111.91	-0.13961					110	31	5	0	0	0	0.59317	1	10467	10467		42.864	3.6114	1	950560	+		16481	16563	13427	13449	18390	18390					0.008596288749458836
HQWKTLKVVV	10	Unmodified	_HQWKTLKVVV_					0	0	0		ENST00000602461.1_1_X:45629503-45629563:-|nuORF	ENST00000602461.1_1_X:45629503-45629563:-|nuORF	ENST00000602461.1_1_X:45629503-45629563:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	619.3722534179688	2	619.374415	1236.73428	-5.649	-0.0034989	1.4512	0.00089884	-4.1978	-0.0026	619.3752552398936	159.28	1.2139	158.02	157.66	158.88	-1.267					65	23	4	0	0	0	0.81992	1	13791	13791		16.473	0	1	112740			16482	14237	13428	13450	18391	18391					0.12537948456406411
HQWRGLRLR	9	Unmodified	_HQWRGLRLR_					0	0	0		ENST00000368742.3_1_1:153234210-153234426:+|nuORF	ENST00000368742.3_1_1:153234210-153234426:+|nuORF	ENST00000368742.3_1_1:153234210-153234426:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3547973632812	2	611.357422	1220.70029	-1.5159	-0.00092675	-0.72915	-0.00044577	-2.245	-0.0013725	611.3567832501896	147.85	3.7824	146.41	144.39	148.17	-1.4351					181	75	4	0	0	0	0.67509	1	14524	14524		23.042	3.012	1	164640			16483	10882	13429	13451	18392	18392					0.09876964808017874
HQYDGLVEL	9	Unmodified	_HQYDGLVEL_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;ENST00000550262.1_1_12:110770401-110771957:+|nuORF	nc|ENSG00000174437|P16615-5|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.2645874023438	2	537.266739	1072.51892	-2.4457	-0.001314	-2.0271	-0.0010891	-4.4729	-0.0024031	537.2655410604852	107.23	1.55	105.36	105.01	106.56	-1.8785					70	30	4	0	0	0	0.5811	1	9773	9773		34.173	5.0025	1	684190			16484	7463	13430	13452	18393	18393					-0.014434377990482972
HRAATAQYL	9	Unmodified	_HRAATAQYL_					0	0	0		ENST00000465230.5_1_2:220470314-220471132:+|nuORF;ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENSG00000144589|ENST00000456909|STK11IP	ENST00000465230.5_1_2:220470314-220471132:+|nuORF	ENST00000465230.5_1_2:220470314-220471132:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	515.77490234375	2	515.775065	1029.53558	-0.87191	-0.00044971	-0.3222	-0.00016618	-1.1941	-0.00061589	515.774810661351	42.315	0.38363	42.315	42.156	42.539	0					18	7	3	0	0	0	0.26076	1	2710	2710		67.494	16.158	1	752860			16485	5162	13431	13453	18394	18394					0.021991078775499773
HRAATAQYL	9	Unmodified	_HRAATAQYL_					0	0	0		ENST00000465230.5_1_2:220470314-220471132:+|nuORF;ENST00000475396.5_1_2:220462865-220474366:+|nuORF;ENSG00000144589|ENST00000456909|STK11IP	ENST00000465230.5_1_2:220470314-220471132:+|nuORF	ENST00000465230.5_1_2:220470314-220471132:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.775065	1029.53558	0.20572	0.0001061	0.24391	0.0001258	0.44963	0.00023191	516.2769743677472	45.032	0.69566	42.323	41.851	42.547	-2.7097	0.0040481	0.00038011	NaN	67.494	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34161			16486	5162	13431	13453							0.021991078775499773
HRATNAPP	8	Unmodified	_HRATNAPP_					0	0	0			REV__nc|ENSG00000159263|Q14190-2|SIM2	REV__nc|ENSG00000159263|Q14190-2|SIM2	MULTI-MSMS	OvCa99_classI_Rep5	1	432.2275390625	2	432.227751	862.440949	-0.059066	-2.553E-05	0.28899	0.00012491	0.22993	9.9381E-05	432.2277667520387	39.085	0.62338	39.085	38.882	39.505	0					19	13	2	0	0	0	0.745	1	2268	2268		29.15	1.2673	1	370280	+		16487	20605	13432	13454	18395	18395					0.004225941262234301
HRATNAPP	8	Unmodified	_HRATNAPP_					0	0	0			REV__nc|ENSG00000159263|Q14190-2|SIM2	REV__nc|ENSG00000159263|Q14190-2|SIM2	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	432.227751	862.440949	-0.059066	-2.553E-05	0.28899	0.00012491	0.22993	9.9381E-05	432.2277667520387	39.085	0.62338	39.085	38.882	39.505	0	0	0	NaN	29.15	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	370280	+		16488	20605	13432	13454							0.004225941262234301
HRCGLEHRA	9	Unmodified	_HRCGLEHRA_					0	0	0		ENSG00000183579|ENST00000544604|ZNRF3;nc|ENSG00000183579|Q9ULT6-2|ZNRF3	ENSG00000183579|ENST00000544604|ZNRF3	ENSG00000183579|ENST00000544604|ZNRF3	MULTI-MSMS	OvCa99_classI_Rep5	1	539.7671508789062	2	539.769791	1077.52503	-0.39326	-0.00021227	-4.443	-0.0023982	-4.8363	-0.0026105	539.7673420678847	38.95	0.71348	38.95	38.75	39.463	0					49	15	4	0	0	0	0.24951	1	2267	2267		68.787	8.4929	1	2781900			16489	8088	13433	13455	18396	18396					-0.010631980485186432
HRDKILEKLN	10	Unmodified	_HRDKILEKLN_					0	0	0			REV__ENSG00000154511|ENST00000370310|DIPK1A	REV__ENSG00000154511|ENST00000370310|DIPK1A	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3690795898438	2	633.369861	1264.72517	-4.5141	-0.0028591	3.4388	0.002178	-1.0753	-0.00068108	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.762	1	15487	15487		23.523	2.5758	1	369460	+		16490	20386	13434	13456	18397	18397					0.10339555100085818
HREGLVVVKVF	11	Unmodified	_HREGLVVVKVF_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4;PIK3R4-PARL|2|fusion;PIK3R4-PARL|1|fusion	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8817749023438	2	641.885147	1281.75574	-4.6434	-0.0029805	0.6524	0.00041876	-3.991	-0.0025618	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.71498	1	15534	15534		24.519	0.99649	1	543390			16491	8611	13435	13457	18398	18398					0.1261333348509197
HRERKKLTRLR	11	Unmodified	_HRERKKLTRLR_					0	0	0			REV__nc|ENSG00000168216|Q9NUN5-4|LMBRD1	REV__nc|ENSG00000168216|Q9NUN5-4|LMBRD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.30865478515625	3	498.314692	1491.92225	-6.1524	-0.0030658	-3.0385	-0.0015141	-9.1909	-0.00458	498.3133054732335	158.89	2.5083	157.31	156.27	158.78	-1.5859					162	69	3	0	0	0	0.72582	1	15650	15650		4.6433	1.2346	1	46050	+		16492	21354	13436	13458	18399	18399					0.19596199433522088
HRERKKLTRLR	11	Unmodified	_HRERKKLTRLR_					0	0	0			REV__nc|ENSG00000168216|Q9NUN5-4|LMBRD1	REV__nc|ENSG00000168216|Q9NUN5-4|LMBRD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3101501464844	3	498.314692	1491.92225	-6.6762	-0.0033268	-2.796	-0.0013933	-9.4722	-0.0047201	498.3133001501435	161.41	1.8887	159.79	158.52	160.4	-1.6239					107	42	4	0	0	0	0.72575	1	15896	15896		5.6988	2.4875	1	100850	+		16493	21354	13436	13458	18400	18400					0.19596199433522088
HRERRWKRLRQ	11	Unmodified	_HRERRWKRLRQ_					0	0	0			REV__ENST00000563197.5_2_16:30007482-30007590:+|nuORF	REV__ENST00000563197.5_2_16:30007482-30007590:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	540.98583984375	3	540.985457	1619.93454	-0.024476	-1.3241E-05	0.93924	0.00050812	0.91476	0.00049487	540.9858309876582	22.012	0.40033	22.012	21.827	22.228	0					33	12	4	0	0	0	0.72582	2	173	173;181		1.523	1.0782	1	79851	+		16494	27655	13437	13459	18401;18402	18401					0.14937235896582024
HRFLRLHRAPR	11	Unmodified	_HRFLRLHRAPR_					0	0	0		ENST00000434316.6_1_13:114193706-114203864:+|nuORF	ENST00000434316.6_1_13:114193706-114203864:+|nuORF	ENST00000434316.6_1_13:114193706-114203864:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	487.2933044433594	3	486.96036	1457.85925	-4.7826	-0.0023289	1.8861	0.00091845	-2.8965	-0.0014105	486.9610953135575	160.39	2.6298	160.16	159.25	161.88	-0.22696					128	53	4	0	0	0	0.72548	1	16338	16338		9.2118	0	1	96650			16495	11838	13438	13460	18403	18403					0.14863678436131522
HRFLVVCK	8	Unmodified	_HRFLVVCK_					0	0	0		ENST00000424280.5_1_3:186282134-186287946:-|nuORF	ENST00000424280.5_1_3:186282134-186287946:-|nuORF	ENST00000424280.5_1_3:186282134-186287946:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	501.2901916503906	2	501.289297	1000.56404	-0.80197	-0.00040202	2.9965	0.0015021	2.1945	0.0011001	501.2906816095173	135.63	4.8104	135.4	133.71	138.52	-0.22697					221	98	3	0	0	0	0.74971	1	13501	13501		26.796	3.7536	1	70595			16496	11711	13439	13461	18404	18404					0.06378134253145618
HRFTLVPQ	8	Unmodified	_HRFTLVPQ_					0	0	0		AluSq2_dup25958|chr8:11842628-11842936:-|2.3617341716705864|0.0949023208327711|4.64|427.0|13|1|anti-sense	AluSq2_dup25958|chr8:11842628-11842936:-|2.3617341716705864|0.0949023208327711|4.64|427.0|13|1|anti-sense	AluSq2_dup25958|chr8:11842628-11842936:-|2.3617341716705864|0.0949023208327711|4.64|427.0|13|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.2986145019531	2	499.282526	996.550499	-1.0888	-0.00054363	2.8618	0.0014288	1.7729	0.00088519	499.28447508844823	27.606	0.3999	27.606	27.291	27.691	0					12	7	2	0	0	0	0.028476	1	822	822		82.305	5.5309	1	36213			16497	76	13440	13462	18405	18405					0.052085997455719735
HRGHIEWP	8	Unmodified	_HRGHIEWP_					0	0	0		ENSG00000122733|ENST00000242315|PHF24	ENSG00000122733|ENST00000242315|PHF24	ENSG00000122733|ENST00000242315|PHF24	MULTI-MSMS	OvCa99_classI_Rep5	1	516.26416015625	2	516.262125	1030.5097	0.86685	0.00044752	2.0018	0.0010335	2.8687	0.001481	516.2629167327607	143.06	0.68019	143.06	142.69	143.37	0					25	13	3	0	0	0	0.73626	1	16714	16714		33.516	1.5607	1	94130			16498	3553	13441	13463	18406	18406					-0.004337415740792494
HRGPVNTI	8	Unmodified	_HRGPVNTI_					0	0	0		ENSG00000176473|ENST00000402312|WDR25	ENSG00000176473|ENST00000402312|WDR25	ENSG00000176473|ENST00000402312|WDR25	MULTI-MSMS	OvCa99_classI_Rep5	1	447.25140380859375	2	447.251226	892.487899	-0.31424	-0.00014054	0.34608	0.00015479	0.031848	1.4244E-05	447.2512487407998	36.816	0.86686	36.816	36.618	37.485	0					48	18	3	0	0	0	0.61436	1	1980	1980		60.972	10.947	1	480770			16499	7611	13442	13464	18407	18407					0.03735453677370515
HRGRHLCLL	9	Unmodified	_HRGRHLCLL_					0	0	0			REV__OR10H1|p.K172Lfs*69|1|0.05|ENSG00000186723|chr19:15807524-15807525|-/CCTCCTGCCTTGGCATCCCAAG|frameshift_variant	REV__OR10H1|p.K172Lfs*69|1|0.05|ENSG00000186723|chr19:15807524-15807525|-/CCTCCTGCCTTGGCATCCCAAG|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	552.8182983398438	2	552.814002	1103.61345	1.6783	0.00092778	0.1357	7.5014E-05	1.814	0.0010028	552.814146688261	134.96	0.53487	134.96	134.78	135.31	0					15	11	2	0	0	0	0.44294	1	15723	15723		47.916	7.343	1	112340	+		16500	29265	13443	13465	18408	18408					0.0657884226193346
HRGRHLCLL	9	Unmodified	_HRGRHLCLL_					0	0	0			REV__OR10H1|p.K172Lfs*69|1|0.05|ENSG00000186723|chr19:15807524-15807525|-/CCTCCTGCCTTGGCATCCCAAG|frameshift_variant	REV__OR10H1|p.K172Lfs*69|1|0.05|ENSG00000186723|chr19:15807524-15807525|-/CCTCCTGCCTTGGCATCCCAAG|frameshift_variant	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	552.814002	1103.61345	1.6783	0.00092778	0.1357	7.5014E-05	1.814	0.0010028	552.814146688261	134.96	0.53487	134.96	134.78	135.31	0	0	0	NaN	47.916	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112340	+		16501	29265	13443	13465							0.0657884226193346
HRHRLKGR	8	Unmodified	_HRHRLKGR_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.78076171875	2	530.323383	1058.63221	-1.6055	-0.00085145	3.0723	0.0016293	1.4668	0.00077788	530.3248381356863	46.043	0.8325	42.971	42.771	43.604	-3.0724					29	15	2	0	0	0	0.028476	1	2429	2429		25.45	1.2474	1	62035	+		16502	16672	13444	13466	18409	18409					0.1052413994800645
HRINRGLR	8	Unmodified	_HRINRGLR_					0	0	0		sp|P09708|US32_HCMVAUncharacterizedproteinHHRF7OS=Humancytomegalovirus(strainAD169)OX=10360GN=US32PE=1SV=1;sp|F5HD03|US32_HCMVMProteinUS32OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US32PE=3SV=1	sp|P09708|US32_HCMVAUncharacterizedproteinHHRF7OS=Humancytomegalovirus(strainAD169)OX=10360GN=US32PE=1SV=1	sp|P09708|US32_HCMVAUncharacterizedproteinHHRF7OS=Humancytomegalovirus(strainAD169)OX=10360GN=US32PE=1SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	511.2866516113281	2	511.309941	1020.60533	-0.10615	-5.4273E-05	1.7705	0.00090528	1.6644	0.00085101	511.3105722441227	95.47	2.813	94.442	93.433	96.246	-1.0281					138	56	5	0	0	0	0.028476	1	8500	8500		40.573	12.318	1	374500			16503	32859	13445	13467	18410	18410					0.09585031336848715
HRIRRPPS	8	Unmodified	_HRIRRPPS_					0	0	0			REV__nc|ENSG00000137656|Q9BRD0-2|BUD13	REV__nc|ENSG00000137656|Q9BRD0-2|BUD13	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8037109375	2	509.804491	1017.59443	-0.41042	-0.00020923	-1.0032	-0.00051141	-1.4136	-0.00072065	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.7549	1	13670	13670		24.203	3.7209	1	150140	+		16504	19466	13446	13468	18411	18411					0.08633628962547846
HRKGIVPMFVI	11	Unmodified	_HRKGIVPMFVI_					0	0	0			REV__ENSG00000100109|ENST00000407690|TFIP11	REV__ENSG00000100109|ENST00000407690|TFIP11	MULTI-MSMS	OvCa9_classI_Rep3	3	432.92633056640625	3	432.925154	1295.75363	1.6734	0.00072447	1.2729	0.00055109	2.9464	0.0012756	432.9256048538329	64.918	2.5849	61.925	61.446	64.031	-2.9933					130	50	4	0	0	0	0.69099	1	2550	2550		32.751	7.6828	1	231790	+		16505	17368	13447	13469	18412	18412					0.11758581475669416
HRKREKRVYV	10	Unmodified	_HRKREKRVYV_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400	REV__nc|ENSG00000183495|Q96L91-4|EP400	MULTI-MSMS	OvCa9_classI_Rep3	3	457.6078186035156	3	457.609105	1369.80549	-6.2056	-0.0028397	4.0929	0.0018729	-2.1127	-0.00096677	457.6108688134911	157.03	3.4081	155.86	154.91	158.32	-1.1707					147	80	2	0	0	0	0.8236	1	13477	13477		16.007	4.3708	1	68588	+		16506	22365	13448	13470	18413	18413					0.13537461213786628
HRLHGVGLSL	10	Unmodified	_HRLHGVGLSL_					0	0	0			REV__ENST00000292174.4_1_11:118767763-118768351:+|nuORF	REV__ENST00000292174.4_1_11:118767763-118768351:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.8219604492188	2	544.819807	1087.62506	-0.062377	-3.3984E-05	1.8659	0.0010166	1.8035	0.00098259	544.8205827812225	90.078	1.42	87.503	87.1	88.52	-2.575					85	27	5	0	0	0	0.46756	1	7774	7774		58.782	9.3404	1	620420	+		16507	24160	13449	13471	18414	18414					0.08475362556964683
HRLKRQTE	8	Unmodified	_HRLKRQTE_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;SYNE1|p.A5284Rfs*31|1|0.11|ENSG00000131018|chr6:152323546-152323547|-/C|frameshift_variant;ENST00000490135.6_1_6:152637953-152655276:-|nuORF	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.7794189453125	2	534.307064	1066.59957	0.51482	0.00027507	1.1069	0.00059141	1.6217	0.00086648	534.30810604338	72.144	1.7615	72.144	71.916	73.678	0					63	43	2	0	0	0	0.028476	1	7075	7075		35.618	2.8059	1	6249300			16508	4036	13450	13472	18415	18415					0.06893888034528572
HRLLAPPL	8	Unmodified	_HRLLAPPL_					0	0	0			REV__ENST00000553851.2_1_X:48928815-48929193:-|nuORF	REV__ENST00000553851.2_1_X:48928815-48929193:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	458.78759765625	2	458.789987	915.565421	-2.0925	-0.00096003	-2.3749	-0.0010896	-4.4675	-0.0020496	458.7887619770069	147.55	1.9467	147.32	146.82	148.77	-0.22697					104	38	4	0	0	0	0.74679	1	14918	14918		28.254	2.8041	1	613710	+		16509	27519	13451	13473	18416	18416					0.10426091613555855
HRLLAPPL	8	Unmodified	_HRLLAPPL_					0	0	0			REV__ENST00000553851.2_1_X:48928815-48929193:-|nuORF	REV__ENST00000553851.2_1_X:48928815-48929193:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	458.787353515625	2	458.789987	915.565421	-3.9056	-0.0017918	-0.79526	-0.00036486	-4.7008	-0.0021567	458.7895332206503	147.83	2.1995	146.88	146.25	148.45	-0.9512					131	43	4	0	0	0	0.74361	2	12467	12467;12493		29.842	6.8048	1	949810	+		16510	27519	13451	13473	18417;18418	18417					0.10426091613555855
HRLLEPELD	9	Unmodified	_HRLLEPELD_					0	0	0			REV__nc|ENSG00000090539|Q9H2X0-5|CHRD	REV__nc|ENSG00000090539|Q9H2X0-5|CHRD	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.3035888671875	2	561.301113	1120.58767	1.8717	0.0010506	1.4414	0.00080904	3.3131	0.0018596	561.3018014766752	32.854	1.5887	30.159	29.605	31.193	-2.6954					54	33	2	0	0	0	0.70685	1	796	796		15.642	4.1308	1	23032	+		16511	17226	13452	13474	18419	18419					0.03220226500661738
HRLLFLSA	8	Unmodified	_HRLLFLSA_					0	0	0		ENST00000537726.5_1_15:80445384-80454681:+|nuORF	ENST00000537726.5_1_15:80445384-80454681:+|nuORF	ENST00000537726.5_1_15:80445384-80454681:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	478.7854919433594	2	478.787444	955.560336	-2.4635	-0.0011795	-1.8767	-0.00089854	-4.3402	-0.0020781	478.7864521794397	145.79	1.5385	145.57	144.98	146.52	-0.22696					81	30	4	0	0	0	0.74971	2	14702	14702;14772		26.796	6.0902	1	230950			16512	13410	13453	13475	18420;18421	18420					0.08077787750949028
HRLRAGRKML	10	Unmodified	_HRLRAGRKML_					0	0	0			REV__sp|P16779|UL38_HCMVAApoptosisinhibitorUL38OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL38PE=3SV=1	REV__sp|P16779|UL38_HCMVAApoptosisinhibitorUL38OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL38PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.37353515625	2	619.374758	1236.73496	-6.2744	-0.0038862	1.4256	0.00088301	-4.8487	-0.0030032	619.3755572557021	159.71	1.0789	158.1	157.75	158.83	-1.6101					53	24	3	0	0	0	0.81992	1	15791	15791		16.473	1.6083	1	88655	+		16513	29412	13454	13476	18422	18422					0.12606464624468572
HRLRLAAINS	10	Unmodified	_HRLRLAAINS_					0	0	0			REV__ENST00000438017.5_1_3:42695550-42695823:-|nuORF	REV__ENST00000438017.5_1_3:42695550-42695823:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8424072265625	2	575.843813	1149.67307	-2.8608	-0.0016474	1.7444	0.0010045	-1.1164	-0.00064289	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.74374	1	14697	14697		25.574	3.6142	1	356230	+		16514	25804	13455	13477	18423	18423					0.10422436476983421
HRLRRKKEEWR	11	Unmodified	_HRLRRKKEEWR_					0	0	0		HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|149|1|anti-sense	HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|149|1|anti-sense	HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|149|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.8045654296875	3	531.97808	1592.91241	-0.40795	-0.00021702	-4.2608	-0.0022667	-4.6688	-0.0024837	532.310028109053	54.464	0.25552	54.464	54.334	54.59	0					7	4	2	0	0	0	0.026551	1	4402	4402		3.4087	1.99	1	152960			16515	14417	13456	13478	18424	18424					0.13967011428167098
HRLVECLA	8	Unmodified	_HRLVECLA_					0	0	0			REV__nc|ENSG00000022556|Q9NX02-4|NLRP2	REV__nc|ENSG00000022556|Q9NX02-4|NLRP2	MULTI-MSMS	OvCa9_classI_Rep2	2	470.7551574707031	2	470.755287	939.496021	-0.44874	-0.00021125	0.27695	0.00013038	-0.17179	-8.0871E-05	470.7553249090684	59.508	1.6722	56.728	56.189	57.861	-2.7801					72	31	4	0	0	0	0.66704	1	4348	4348		50.025	2.1089	1	496080	+		16516	16552	13457	13479	18425	18425					0.023852646024806745
HRLWRSRRRRR	11	Unmodified	_HRLWRSRRRRR_					0	0	0		ENST00000389561.6_1_12:132551999-132562003:+|nuORF	ENST00000389561.6_1_12:132551999-132562003:+|nuORF	ENST00000389561.6_1_12:132551999-132562003:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.6610717773438	3	545.664829	1633.97266	-6.8954	-0.0037626	0.47614	0.00025981	-6.4192	-0.0035027	545.6648588138703	164.14	0.24614	162.51	162.36	162.61	-1.6336					9	5	2	0	0	0	0.72582	1	16222	16222		1.2319	0.89143	1	405130			16517	11197	13458	13480	18426	18426					0.18103166601872545
HRMYRPAYL	9	Unmodified	_HRMYRPAYL_					0	0	0		ENST00000496071.5_1_10:22607528-22608924:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3;ENST00000602574.5_1_10:22607528-22607842:+|nuORF;ENST00000602395.1_1_10:22607528-22615407:+|nuORF;ENST00000463409.6_1_10:22605382-22615407:+|nuORF	ENST00000496071.5_1_10:22607528-22608924:+|nuORF	ENST00000496071.5_1_10:22607528-22608924:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	402.8793029785156	3	402.878204	1205.61278	0.64507	0.00025988	-0.46436	-0.00018708	0.18071	7.2803E-05	402.87793244926786	53.438	1.0411	53.438	53.172	54.214	0					49	24	4	0	0	0	0.42057	1	4241	4241		56.721	16.663	1	3026400			16518	5413	13459	13481	18427	18427					0.01820002822250899
HRNQRKRR	8	Unmodified	_HRNQRKRR_					0	0	0		ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENST00000472730.1_1_3:61728131-61728755:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8428344726562	2	575.842471	1149.67039	-2.8608	-0.0016474	4.076	0.0023472	1.2152	0.00069978	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.75241	1	14552	14552		25.45	4.5032	1	356230			16519	12397	13460	13482	18428	18428					0.10154025862675553
HRPHKRRHCRR	11	Unmodified	_HRPHKRRHCRR_					0	0	0			REV__ENST00000265140.9_1_5:93954307-93964559:+|nuORF	REV__ENST00000265140.9_1_5:93954307-93964559:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.6240844726562	3	513.623865	1537.84977	-1.1138	-0.00057205	-1.4179	-0.00072825	-2.5316	-0.0013003	513.623106211836	66.174	1.9145	62.684	62.418	64.333	-3.4902					128	38	5	0	0	0	0.72488	1	4790	4790		17.167	0	1	5280900	+		16520	24027	13461	13483	18429	18429					0.10235586878957292
HRPLMPASSA	10	Unmodified	_HRPLMPASSA_					0	0	0		nc|ENSG00000079432|Q96RK0-2|CIC	nc|ENSG00000079432|Q96RK0-2|CIC	nc|ENSG00000079432|Q96RK0-2|CIC	MULTI-MSMS	OvCa99_classI_Rep5	1	534.27392578125	2	533.776751	1065.53895	-0.22966	-0.00012258	0.20952	0.00011184	-0.020132	-1.0746E-05	533.7766657329263	29.902	1.6941	29.902	29.137	30.831	0					54	33	3	0	0	0	0.6104	1	1087	1087		40.778	6.6056	1	53152			16521	14898	13462	13484	18430	18430					0.008800346599400655
HRPLVSLLL	9	Unmodified	_HRPLVSLLL_					0	0	0			REV__nc|ENSG00000173175|O95622-2|ADCY5	REV__nc|ENSG00000173175|O95622-2|ADCY5	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.2721557617188	2	524.337301	1046.66005	-0.62381	-0.00032709	-0.18742	-9.8273E-05	-0.81124	-0.00042536	524.3370004221592	99.544	0.49669	98.714	98.517	99.014	-0.83052					11	9	2	0	0	0	0.027462	1	9079	9079		24.203	3.7209	1	13931	+		16522	21754	13463	13485	18431	18431					0.13858605364907817
HRPPVIVL	8	Unmodified	_HRPPVIVL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	OvCa9_classI_Rep2	2	465.7978210449219	2	465.797812	929.581071	-0.42803	-0.00019937	0.23627	0.00011006	-0.19175	-8.9318E-05	465.79781210192704	77.264	2.7252	75.475	75.155	77.88	-1.7894					130	52	4	0	0	0	0.66704	4	6420	6414;6420;6427;6433		50.025	23.228	1	884660			16523	6630	13464	13486	18432;18433;18434;18435	18433					0.11346378130599533
HRPPVIVL	8	Unmodified	_HRPPVIVL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	OvCa9_classI_Rep3	3	465.79754638671875	2	465.797812	929.581071	-0.63826	-0.0002973	0.64646	0.00030112	0.0081906	3.8152E-06	465.7979916755387	77.734	3.7766	75.381	75.047	78.824	-2.3527					149	74	4	0	0	0	0.62934	5	4100	4082;4088;4094;4100;4113		57.811	22.611	1	1194400			16524	6630	13464	13486	18436;18437;18438;18439;18440	18439					0.11346378130599533
HRPPVIVL	8	Unmodified	_HRPPVIVL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.7986755371094	2	465.797812	929.581071	-0.089704	-4.1784E-05	-0.4136	-0.00019266	-0.50331	-0.00023444	465.79750692738764	78.676	2.7842	75.925	75.571	78.355	-2.7514					116	57	3	0	0	0	0.65582	4	6340	6340;6349;6362;6376		52.299	20.72	1	1172300			16525	6630	13464	13486	18441;18442;18443;18444	18441					0.11346378130599533
HRPVLLGG	8	Unmodified	_HRPVLLGG_					0	0	0		ENST00000513120.2_1_4:8605677-8612970:+|nuORF;ENST00000514302.5_1_4:8602857-8612970:+|nuORF	ENST00000513120.2_1_4:8605677-8612970:+|nuORF	ENST00000513120.2_1_4:8605677-8612970:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	424.7585144042969	2	424.758687	847.502821	0.0048471	2.0588E-06	0.21993	9.3418E-05	0.22478	9.5477E-05	424.75868094970195	47.377	1.2961	47.377	47.076	48.372	0					54	29	2	0	0	0	0.74679	1	3395	3395		28.254	1.4582	1	1639400			16526	13005	13465	13487	18445	18445					0.07296945545374456
HRQKMAKN	8	Unmodified	_HRQKMAKN_					0	0	0			REV__nc|ENSG00000124721|Q96JB1-2|DNAH8	REV__nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.82275390625	2	506.777085	1011.53962	-1.0667	-0.00054058	-4.4109	-0.0022354	-5.4776	-0.0027759	506.77510157813145	69.902	1.2165	66.421	66.105	67.322	-3.4812					47	24	3	0	0	0	0.028476	1	5338	5338		31.955	6.3808	1	428890	+		16527	18702	13466	13488	18446	18446					0.03430874099626635
HRRALPNHL	9	Unmodified	_HRRALPNHL_					0	0	0		ENSG00000107282|ENST00000265381|APBA1;nc|ENSG00000107282|Q02410-2|APBA1;APBA1|p.D550Tfs*8|1|0.08|ENSG00000107282|chr9:69456387-69456387|C/-|frameshift_variant	ENSG00000107282|ENST00000265381|APBA1	ENSG00000107282|ENST00000265381|APBA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.3244018554688	2	557.323048	1112.63154	0.47418	0.00026427	1.567	0.00087332	2.0412	0.0011376	557.3238353712901	105.73	1.5165	103.72	103.2	104.72	-2.0161					54	29	4	0	0	0	0.48324	1	9618	9618		44.117	9.9443	1	214370			16528	2598	13467	13489	18447	18447					0.0797330050831988
HRRQHALLH	9	Unmodified	_HRRQHALLH_					0	0	0			REV__ENSG00000180532|ENST00000318203|ZSCAN4	REV__ENSG00000180532|ENST00000318203|ZSCAN4	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3326416015625	2	584.333947	1166.65334	-1.2681	-0.00074098	0.024656	1.4407E-05	-1.2434	-0.00072657	584.3339090960189	33.507	1.6858	30.797	30.571	32.257	-2.7097					89	33	4	0	0	0	0.6653	1	1261	1261		24.203	1.6231	1	807420	+		16529	22179	13468	13490	18448	18448					0.0766810525690289
HRRRRRRVCRL	11	Unmodified	_HRRRRRRVCRL_					0	0	0			REV__ENSG00000184560|ENST00000333870|SPEM2	REV__ENSG00000184560|ENST00000333870|SPEM2	MSMS	OvCa9_classI_Rep4_	4	521.9853515625	3	521.986915	1562.93892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	162.51	1	160.89	160.39	161.39	-1.6239								0	0	0	0.19474	1	16063	16063		0.37141	0.37141	1		+		16530	22438	13469	13491	18449	18449					0.1799642183850665
HRRRRRWWWRR	11	Unmodified	_HRRRRRWWWRR_					0	0	0			REV__ENST00000395136.6_2_1:70687096-70687432:+|nuORF	REV__ENST00000395136.6_2_1:70687096-70687432:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	603.3469848632812	3	603.012341	1806.01519	1.4769	0.00089058	0.69065	0.00041647	2.1675	0.001307	603.012838296433	34.95	1.8528	32.117	31.653	33.505	-2.8329					127	36	6	0	0	0	0.72582	2	1077	1077;1115		1.4188	1.0782	1	448550	+		16531	25308	13470	13492	18450;18451	18450					0.14442561730129455
HRSTLPLLAI	10	Unmodified	_HRSTLPLLAI_					0	0	0			REV__ENST00000227507.2_1_11:69467885-69468137:+|nuORF	REV__ENST00000227507.2_1_11:69467885-69468137:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.8480834960938	2	560.84549	1119.67643	4.3777	0.0024552	2.3002	0.00129	6.6779	0.0037453	560.8466340657677	134.1	1.1382	132.57	132.29	133.43	-1.5257					51	22	3	0	0	0	0.6349	1	12950	12950		37.812	0.65241	1	72313	+		16532	23772	13471	13493	18452	18452					0.12137686530991232
HRSTLTKKM	9	Unmodified	_HRSTLTKKM_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MSMS	OvCa99_classI_Rep5	1	551.3130493164062	2	551.3135	1100.61245	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.053	1	26.053	25.553	26.553	0								0	0	0	0.16747	1	643	643		58.23	8.7884	1				16533	1094	13472	13494	18453	18453					0.06616583102390905
HRVFGWWGS	9	Unmodified	_HRVFGWWGS_					0	0	0			REV__ENSG00000143815|ENST00000272163|LBR	REV__ENSG00000143815|ENST00000272163|LBR	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.2993774414062	2	566.277775	1130.541	2.0502	0.001161	3.5001	0.001982	5.5503	0.003143	566.2797745946946	134.72	0.42838	134.72	134.47	134.9	0					15	9	3	0	0	0	0.027462	1	15674	15674		44.117	21.074	1	420470	+		16534	19869	13473	13495	18454	18454					-0.019051685399517737
HRVVRAALGQ	10	Unmodified	_HRVVRAALGQ_					0	0	0		ENST00000479282.5_1_1:16272460-16274990:-|nuORF	ENST00000479282.5_1_1:16272460-16274990:-|nuORF	ENST00000479282.5_1_1:16272460-16274990:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8302612304688	2	553.830706	1105.64686	0.13278	7.3535E-05	-1.033	-0.00057208	-0.90018	-0.00049855	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.6104	1	14003	14003		40.778	7.9657	1	400120			16535	12504	13474	13496	18455	18455					0.09826167305504896
HRVWGELQ	8	Unmodified	_HRVWGELQ_					0	0	0		ENST00000272849.7_2_2:206610606-206614560:+|nuORF	ENST00000272849.7_2_2:206610606-206614560:+|nuORF	ENST00000272849.7_2_2:206610606-206614560:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	512.7679443359375	2	512.769783	1023.52501	-0.37168	-0.00019059	-3.1594	-0.00162	-3.5311	-0.0018106	512.7681442537512	39.787	0.94422	37.077	36.805	37.749	-2.7097					35	18	3	0	0	0	0.56195	1	1962	1962		71.296	15.791	1	128180			16536	10002	13475	13497	18456	18456					0.014191252231285034
HRVYLVRKL	9	Unmodified	_HRVYLVRKL_					0	0	0		RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.T5031Rfs*29|1|0.06|ENSG00000173821|chr17:80389261-80389262|-/TCGG|frameshift_variant;RNF213|p.G5057Vfs*8|1|0.18|ENSG00000173821|chr17:80389340-80389340|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	592.3743896484375	2	592.374749	1182.73495	-0.30601	-0.00018127	-0.066875	-3.9615E-05	-0.37288	-0.00022089	592.3746023646057	44.626	1.1459	44.626	44.35	45.496	0					67	25	4	0	0	0	0.29717	2	3024	3024;3050		63.306	20.91	1	1416100			16537	7416	13476	13498	18457;18458	18457					0.15088787896115718
HRWHWCSRCFY	11	Unmodified	_HRWHWCSRCFY_					0	0	0			REV__nc|ENSG00000214575|Q9BZB8-4|CPEB1	REV__nc|ENSG00000214575|Q9BZB8-4|CPEB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3177490234375	3	527.564402	1579.67138	-0.51324	-0.00027077	-0.0044081	-2.3256E-06	-0.51765	-0.00027309	527.5645363615464	67.662	0.31332	67.662	67.528	67.842	0					16	7	3	0	0	0	0.026534	1	6337	6337		6.001	2.7897	1	367700	+		16538	23292	13477	13499	18459	18459					-0.09527263874929304
HRWRRLRVKRG	11	Unmodified	_HRWRRLRVKRG_					0	0	0			REV__ENST00000342232.4_1_8:75233190-75233559:-|nuORF	REV__ENST00000342232.4_1_8:75233190-75233559:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	507.31256103515625	3	507.315026	1518.92325	-7.2505	-0.0036783	-2.5388	-0.001288	-9.7893	-0.0049663	507.31400483839707	163.92	1.3967	162.53	161.26	162.66	-1.3925					92	31	4	0	0	0	0.72582	1	14285	14285		3.4087	0.19739	1	78750	+		16539	24646	13478	13500	18460	18460					0.18454458593078016
HRWWFRKFLIH	11	Unmodified	_HRWWFRKFLIH_					0	0	0			REV__ENST00000354179.8_2_5:176671236-176673694:+|nuORF	REV__ENST00000354179.8_2_5:176671236-176673694:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.6370849609375	3	542.636995	1624.88916	-0.10654	-5.7812E-05	0.44922	0.00024376	0.34268	0.00018595	542.6372513125856	37.976	3.034	35.084	34.343	37.377	-2.8925					200	60	5	0	0	0	0.7257	3	1418	1418;1455;1496		6.3209	3.1096	1	523720	+		16540	24731	13479	13501	18461;18462;18463	18461					0.10170617381481861
HRYFKANDTL	10	Unmodified	_HRYFKANDTL_					0	0	0		ENSG00000184194|ENST00000332582|GPR173	ENSG00000184194|ENST00000332582|GPR173	ENSG00000184194|ENST00000332582|GPR173	MULTI-SECPEP	OvCa99_classI_Rep5	1	632.3416137695312	2	632.825286	1263.63602	1.4086	0.0008914	-2.9883	-0.0018911	-1.5797	-0.00099965	632.8245876324829	150.7	0.50014	150.7	150.34	150.84	0					20	9	4	0	0	0	0.02706	1	17602	17602		17.468	2.7743	1	42891			16541	8135	13480	13502	18464	18464					0.014747201405725718
HRYPNQVYY	9	Unmodified	_HRYPNQVYY_					0	0	0		ENSG00000171867|ENST00000379440|PRNP	ENSG00000171867|ENST00000379440|PRNP	ENSG00000171867|ENST00000379440|PRNP	MULTI-MSMS	OvCa99_classI_Rep5	1	620.300048828125	2	620.298904	1238.58326	-0.63521	-0.00039402	0.9214	0.00057155	0.28619	0.00017753	620.2992028093058	54.187	0.94548	54.187	53.815	54.761	0					56	22	4	0	0	0	0.11171	1	4350	4350		94.006	51.142	1	3835600			16542	7245	13481	13503	18465	18465					-0.026492379222418094
HSAFQKVE	8	Unmodified	_HSAFQKVE_					0	0	0			REV__tr|A0A553STU2|A0A553STU2_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_05610PE=4SV=1	REV__tr|A0A553STU2|A0A553STU2_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_05610PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	473.2423400878906	2	473.243067	944.47158	-1.2197	-0.00057723	1.2228	0.00057867	0.0030476	1.4423E-06	473.24345691842643	53.714	1.8932	50.9	50.479	52.372	-2.8139					103	37	4	0	0	0	0.72896	1	3641	3641		37.159	1.5408	1	437470	+		16543	31013	13482	13504	18466	18466					-0.0028767227937578355
HSAQFSVLG	9	Unmodified	_HSAQFSVLG_					0	0	0		nc|ENSG00000026950|O00481-4|BTN3A1;ENSG00000026950|ENST00000289361|BTN3A1;ENST00000082468.11_1_6:26405791-26410201:+|nuORF;nc|ENSG00000026950|O00481-2|BTN3A1;nc|ENSG00000026950|O00481-3|BTN3A1	nc|ENSG00000026950|O00481-4|BTN3A1	nc|ENSG00000026950|O00481-4|BTN3A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.24444580078125	2	473.243067	944.47158	-0.24925	-0.00011796	0.41719	0.00019743	0.16794	7.9475E-05	473.2430688770203	54.03	2.1453	50.783	50.314	52.459	-3.2474					111	41	4	0	0	0	0.44294	1	3325	3325		47.916	1.9636	1	1113400			16544	1053	13483	13505	18467	18467					-0.0028767227936441486
HSCITLYKP	9	Unmodified	_HSCITLYKP_					0	0	0		ENST00000327475.10_1_6:38750816-38754639:+|nuORF	ENST00000327475.10_1_6:38750816-38754639:+|nuORF	ENST00000327475.10_1_6:38750816-38754639:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.2963256835938	2	531.276052	1060.53755	0.3945	0.00020959	2.8934	0.0015372	3.2879	0.0017468	531.2776593113417	85.828	0.84299	83.182	82.8	83.643	-2.6463					24	16	2	0	0	0	0.027462	1	7288	7288		32.812	10.853	1	37144			16545	10416	13484	13506	18468	18468					0.00970400571168284
HSDKAKESI	9	Unmodified	_HSDKAKESI_					0	0	0		ENSG00000132612|ENST00000254950|VPS4A	ENSG00000132612|ENST00000254950|VPS4A	ENSG00000132612|ENST00000254950|VPS4A	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7629089355469	2	507.764363	1013.51417	-0.75433	-0.00038302	-1.6017	-0.00081327	-2.356	-0.0011963	507.7634972764376	115.15	1.4832	115.03	114.8	116.28	-0.11777					77	29	3	0	0	0	0.51177	1	10992	10992		41.427	2.1738	1	179880			16546	4152	13485	13507	18469	18469					0.007956780581821477
HSDMSLGE	8	Unmodified	_HSDMSLGE_					0	0	0			REV__ENST00000533291.5_1_11:120531027-120833419:+|nuORF	REV__ENST00000533291.5_1_11:120531027-120833419:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	438.7570495605469	2	438.181817	874.349082	0.75921	0.00033267	-4.1418	-0.0018149	-3.3826	-0.0014822	438.1796866893967	60.344	0.36494	60.344	60.153	60.518	0					13	8	2	0	0	0	0.028476	1	5239	5239		25.45	0	1	135360	+		16547	20160	13486	13508	18470	18470					-0.09311877073105279
HSEEWIRRRER	11	Unmodified	_HSEEWIRRRER_					0	0	0			REV__HERVH-int_dup82|chr1:53424769-53427698:+|2.2654386177007835|0.0864871400321217|4.71|417.0|130|2|anti-sense	REV__HERVH-int_dup82|chr1:53424769-53427698:+|2.2654386177007835|0.0864871400321217|4.71|417.0|130|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.750732421875	3	518.606312	1552.79711	-1.6253	-0.00084291	1.7654	0.00091555	0.14006	7.2634E-05	518.940886896245	48.885	0.62833	45.778	45.553	46.181	-3.1077					14	11	2	0	0	0	0.026416	1	2697	2697		11.932	2.7206	1	22715	+		16548	15831	13487	13509	18471	18471					0.04281862506468315
HSEPNSVIV	9	Unmodified	_HSEPNSVIV_					0	0	0		tr|A0A553SRI8|A0A553SRI8_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_01140PE=4SV=1	tr|A0A553SRI8|A0A553SRI8_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_01140PE=4SV=1	tr|A0A553SRI8|A0A553SRI8_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_01140PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.77484130859375	2	491.253631	980.49271	-0.9716	-0.0004773	2.0674	0.0010156	1.0958	0.00053832	491.2533669569458	34.026	0.43252	34.026	33.776	34.209	0					19	8	3	0	0	0	0.027462	1	1588	1588		29.15	2.4566	1	60995			16549	34267	13488	13510	18472	18472					0.0016829302948053737
HSESGGMPE	9	Unmodified	_HSESGGMPE_					0	0	0		ENST00000462410.5_1_1:211533229-211533703:+|nuORF	ENST00000462410.5_1_1:211533229-211533703:+|nuORF	ENST00000462410.5_1_1:211533229-211533703:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.2649230957031	2	465.684724	929.354895	-0.75258	-0.00035046	2.2655	0.001055	1.5129	0.00070454	465.68500556133836	95.908	0.86399	93.483	93.254	94.118	-2.4256					31	16	3	0	0	0	0.027462	1	8445	8445		15.642	0	1	81681			16550	12201	13489	13511	18473	18473					-0.11260778561427287
HSEWGVPVL	9	Unmodified	_HSEWGVPVL_					0	0	0			REV__ENSG00000198753|ENST00000361971|PLXNB3	REV__ENSG00000198753|ENST00000361971|PLXNB3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.7937622070312	2	512.266542	1022.51853	-0.70641	-0.00036187	0.72794	0.0003729	0.021527	1.1028E-05	512.2666720908305	91.739	2.8428	89.196	87.885	90.728	-2.5425					140	55	3	0	0	0	0.027462	1	7839	7839		30.504	0	1	137600	+		16551	23057	13490	13512	18474	18474					0.00817187271752573
HSFDELAPGG	10	Unmodified	_HSFDELAPGG_					0	0	0			REV__nc|ENSG00000137942|Q5T0N5-2|FNBP1L	REV__nc|ENSG00000137942|Q5T0N5-2|FNBP1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.2933349609375	2	515.235439	1028.45632	-0.12609	-6.4966E-05	-3.7074	-0.0019102	-3.8335	-0.0019752	515.2346732598345	32.803	0.38744	32.803	32.602	32.989	0					12	7	3	0	0	0	0.026665	1	1468	1468		9.1829	0	1	17222	+		16552	28879	13491	13513	18475	18475					-0.0567658386723906
HSFEEFEAL	9	Unmodified	_HSFEEFEAL_					0	0	0		SVEP1|p.S2985Tfs*35|1|0.18|ENSG00000165124|chr9:110406648-110406649|-/GAGAACCACAAGAAGTGTG|frameshift_variant;SVEP1|p.P3171Lfs*10|1|0.28|ENSG00000165124|chr9:110404460-110404481|GGACTGCAGGAGATTCTCTCAG/-|frameshift_variant;ENSG00000165124|ENST00000374469|SVEP1;ENST00000467821.1_1_9:113205816-113312285:-|nuORF;nc|ENSG00000165124|Q4LDE5-4|SVEP1;nc|ENSG00000165124|Q4LDE5-2|SVEP1	SVEP1|p.S2985Tfs*35|1|0.18|ENSG00000165124|chr9:110406648-110406649|-/GAGAACCACAAGAAGTGTG|frameshift_variant	SVEP1|p.S2985Tfs*35|1|0.18|ENSG00000165124|chr9:110406648-110406649|-/GAGAACCACAAGAAGTGTG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.7813110351562	2	554.750921	1107.48729	-0.30781	-0.00017076	-1.1502	-0.00063806	-1.458	-0.00080881	554.7502159306405	61.884	0.20853	61.884	61.704	61.912	0					6	4	2	0	0	0	0.027462	1	5473	5473		35.618	5.1146	1	186310			16553	6524	13492	13514	18476	18476					-0.06215430552992984
HSFEICLFA	9	Unmodified	_HSFEICLFA_					0	0	0			REV__nc|ENSG00000162929|Q6NSI8-3|SANBR	REV__nc|ENSG00000162929|Q6NSI8-3|SANBR	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.7807006835938	2	533.754953	1065.49535	2.4381	0.0013013	-4.2827	-0.0022859	-1.8446	-0.00098458	533.752314285948	80.36	0.29485	80.36	80.148	80.443	0					10	6	2	0	0	0	0.027462	1	8239	8239		19.36	10.538	1	147330	+		16554	20794	13493	13515	18477	18477					-0.034775748372339876
HSFEICLFA	9	Unmodified	_HSFEICLFA_					0	0	0			REV__nc|ENSG00000162929|Q6NSI8-3|SANBR	REV__nc|ENSG00000162929|Q6NSI8-3|SANBR	MULTI-MATCH	OvCa9_classI_Rep2	2		2	533.754953	1065.49535	-0.53101	-0.00028343	-3.2278	-0.0017228	-3.7588	-0.0020063	533.7527677866728	82.154	0.72898	80.506	80.127	80.856	-1.6485	0.072655	0.00081394	NaN	12.959	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16432	+		16555	20794	13493	13515							-0.034775748372339876
HSFGDGEVQV	10	Unmodified	_HSFGDGEVQV_					0	0	0			REV__ENSG00000180182|ENST00000324817|MED14	REV__ENSG00000180182|ENST00000324817|MED14	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.7838745117188	2	537.74617	1073.47779	1.885	0.0010137	-3.3785	-0.0018168	-1.4935	-0.00080315	537.7444528831513	77.685	0.30054	77.685	77.544	77.844	0					10	6	2	0	0	0	0.026931	1	7860	7860		30.318	0	1	135350	+		16556	22161	13494	13516	18478	18478					-0.05601198838508026
HSFLGHLLSVL	11	Unmodified	_HSFLGHLLSVL_					0	0	0		ENST00000265631.9_1_7:95761107-95761182:-|nuORF	ENST00000265631.9_1_7:95761107-95761182:-|nuORF	ENST00000265631.9_1_7:95761107-95761182:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	408.8909912109375	3	408.236274	1221.68699	1.0337	0.00042199	0.10074	4.1127E-05	1.1344	0.00046311	408.23633086587887	22.221	1.0285	20.882	20.422	21.45	-1.3386					31	20	3	0	0	0	0.025908	1	250	250		11.932	0	1	31134			16557	9953	13495	13517	18479	18479					0.08501669185420724
HSFPLTIW	8	Unmodified	_HSFPLTIW_					0	0	0		ENST00000249883.9_1_3:134076331-134076550:-|nuORF	ENST00000249883.9_1_3:134076331-134076550:-|nuORF	ENST00000249883.9_1_3:134076331-134076550:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.8042907714844	2	500.766178	999.517802	0.89786	0.00044962	0.87701	0.00043918	1.7749	0.0008888	500.7664327849186	80.996	0.74928	80.996	80.744	81.493	0					27	17	2	0	0	0	0.028476	1	8318	8318		12.207	5.0135	1	474690			16558	9790	13496	13518	18480	18480					0.018023926227101583
HSGLSLII	8	Unmodified	_HSGLSLII_					0	0	0		ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MSMS	OvCa9_classI_Rep2	2	420.2527160644531	2	420.252903	838.491253	0.41101	0.00017273	-0.075014	-3.1525E-05	0.336	0.0001412	420.2527341495351	108.37	2.424	108.15	107.78	110.2	-0.22498					119	48	4	0	0	0	0.66704	1	10169	10169		50.025	3.2581	1	477420			16559	945	13497	13519	18481	18481					0.06554703731376321
HSGRRFALL	9	Unmodified	_HSGRRFALL_					0	0	0			REV__ENST00000406721.7_1_9:139635361-139636622:-|nuORF	REV__ENST00000406721.7_1_9:139635361-139636622:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	528.8070068359375	2	528.8067	1055.59885	-0.9416	-0.00049792	-0.9837	-0.00052019	-1.9253	-0.0010181	528.8061375588696	87.696	1.6773	85.519	84.884	86.561	-2.1768					72	32	4	0	0	0	0.53957	1	5299	5299		38.806	4.6336	1	611830	+		16560	25446	13498	13520	18482	18482					0.0732709338544737
HSGVVLGLAW	10	Unmodified	_HSGVVLGLAW_					0	0	0			REV__ENST00000461320.5_1_1:150238924-150239633:-|nuORF	REV__ENST00000461320.5_1_1:150238924-150239633:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.8211059570312	2	519.790184	1037.56581	0.8071	0.00041952	-1.2513	-0.00065043	-0.44424	-0.00023091	519.7901067036609	131.84	0.28825	131.62	131.54	131.83	-0.22696					9	5	2	0	0	0	0.026822	1	13006	13006		38.806	17.859	1	18487	+		16561	18346	13499	13521	18483	18483					0.04853466542726892
HSGVVRTARVL	11	Unmodified	_HSGVVRTARVL_					0	0	0		ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	ENSG00000166341|ENST00000299441|DCHS1	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8565673828125	2	597.856921	1193.69929	-2.7036	-0.0016164	1.7084	0.0010214	-0.99524	-0.00059501	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.71789	1	12777	12777		23.523	1.8369	1	591030			16562	6667	13500	13522	18484	18484					0.11018705648439209
HSHGHRISDI	10	Unmodified	_HSHGHRISDI_					0	0	0		nc|nan|A6NFR6-4|C5orf60;nc|nan|A6NFR6-2|C5orf60	nc|nan|A6NFR6-4|C5orf60	nc|nan|A6NFR6-4|C5orf60	MULTI-MSMS	OvCa99_classI_Rep5	1	579.7881469726562	2	579.791778	1157.569	0.93258	0.0005407	-2.1309	-0.0012355	-1.1983	-0.00069476	579.7906160912456	131	0.80748	131	130.63	131.43	0					25	16	2	0	0	0	0.37436	1	15210	15210		71.877	4.3838	1	114220			16563	15415	13501	13523	18485	18485					-0.003478903505310882
HSHLTQHQKI	10	Unmodified	_HSHLTQHQKI_					0	0	0		ENSG00000142065|ENST00000270001|ZFP14	ENSG00000142065|ENST00000270001|ZFP14	ENSG00000142065|ENST00000270001|ZFP14	MULTI-SECPEP	OvCa99_classI_Rep5	1	409.5863342285156	3	410.223028	1227.64725	-0.006172	-2.5319E-06	1.3845	0.00056795	1.3783	0.00056542	410.55770471024334	34.48	0.51644	34.48	34.209	34.725	0					20	10	3	0	0	0	0.026635	1	1652	1652		51.528	6.8883	1	90740			16564	4953	13502	13524	18486	18486					0.04253542234710039
HSHQLLPLL	9	Unmodified	_HSHQLLPLL_					0	0	0		GPR139|p.R244Pfs*75|1|0.09|ENSG00000180269|chr16:20032066-20032067|-/G|frameshift_variant	GPR139|p.R244Pfs*75|1|0.09|ENSG00000180269|chr16:20032066-20032067|-/G|frameshift_variant	GPR139|p.R244Pfs*75|1|0.09|ENSG00000180269|chr16:20032066-20032067|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.7772216796875	2	529.311284	1056.60801	-0.62112	-0.00032877	3.8542	0.0020401	3.2331	0.0017113	529.3128970887292	93.455	1.2352	92.287	91.706	92.942	-1.168					47	23	3	0	0	0	0.027441	1	8370	8370		45.952	13.997	1	106190			16565	14350	13503	13525	18487	18487					0.08197441951142537
HSHQPPVQM	9	Unmodified	_HSHQPPVQM_					0	0	0		ENSG00000172985|ENST00000309415|SH3RF3	ENSG00000172985|ENST00000309415|SH3RF3	ENSG00000172985|ENST00000309415|SH3RF3	MULTI-MSMS	OvCa9_classI_Rep2	2	530.7544555664062	2	530.753276	1059.492	-1.2066	-0.00064041	3.4356	0.0018234	2.2289	0.001183	530.7548834024769	32.414	0.64286	29.704	29.53	30.173	-2.7097					22	12	3	0	0	0	0.59259	1	1075	1075		32.812	3.6629	1	44391			16566	7337	13504	13526	18488	18488					-0.035368248912163835
HSHSKNMWS	9	Unmodified	_HSHSKNMWS_					0	0	0			REV__ENST00000548171.1_1_12:120894925-120897766:+|nuORF	REV__ENST00000548171.1_1_12:120894925-120897766:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	557.251953125	2	557.248357	1112.48216	2.3915	0.0013327	3.5801	0.001995	5.9716	0.0033277	557.2501254366167	76.718	1.4396	76.718	76.405	77.844	0					66	34	3	0	0	0	0.51865	1	7700	7700		40.778	6.6056	1	2073100	+		16567	27438	13505	13527	18489	18489					-0.0695801289659812
HSIDNIRTV	9	Unmodified	_HSIDNIRTV_					0	0	0			REV__ENSG00000174697|ENST00000308868|LEP	REV__ENSG00000174697|ENST00000308868|LEP	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.7794799804688	2	527.78563	1053.55671	-1.183	-0.00062436	2.3035	0.0012157	1.1205	0.00059138	527.7867886909762	36.773	0.35882	36.773	36.618	36.977	0					13	7	2	0	0	0	0.027462	1	1949	1949		14.865	2.658	1	533310	+		16568	21847	13506	13528	18490	18490					0.03207073186422349
HSIEEKTSK	9	Unmodified	_HSIEEKTSK_					0	0	0		ENSG00000173908|ENST00000306658|KRT28;CON__Q7Z3Y7	ENSG00000173908|ENST00000306658|KRT28	ENSG00000173908|ENST00000306658|KRT28	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.8119506835938	2	529.77747	1057.54039	-0.44135	-0.00023382	0.41386	0.00021925	-0.027489	-1.4563E-05	529.777599976024	70.515	0.96741	67.944	67.563	68.53	-2.5707					33	18	3	0	0	0	0.027462	1	5700	5700		20.947	0	1	79706		+	16569	657	13507	13529	18491	18491					0.01391947229649304
HSIFKPYGF	9	Unmodified	_HSIFKPYGF_					0	0	0			REV__nc|ENSG00000076604|Q9BUZ4-2|TRAF4	REV__nc|ENSG00000076604|Q9BUZ4-2|TRAF4	MULTI-SECPEP	OvCa9_classI_Rep2	2	548.3652954101562	2	548.284734	1094.55492	-0.40063	-0.00021966	-3.9289	-0.0021541	-4.3295	-0.0023738	548.2823316963945	67.379	0.49594	64.718	64.545	65.041	-2.661					14	9	2	0	0	0	0.027425	1	5275	5275		31.955	0	1	30400	+		16570	16995	13508	13530	18492	18492					0.01142064168448087
HSIIETLRQ	9	Unmodified	_HSIIETLRQ_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000436135.1_1_1:158495283-158495625:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.8649291992188	2	548.809105	1095.60366	-0.62416	-0.00034254	-1.4664	-0.00080478	-2.0906	-0.0011473	549.3087777874555	54.802	0.72764	54.802	54.422	55.15	0					27	16	3	0	0	0	0.027462	1	4454	4454		39.253	7.298	1	246100			16571	1643	13509	13531	18493	18493					0.059679327375761204
HSIIQILVII	10	Unmodified	_HSIIQILVII_					0	0	0		ENSG00000175619|ENST00000309562|OR4B1	ENSG00000175619|ENST00000309562|OR4B1	ENSG00000175619|ENST00000309562|OR4B1	MULTI-SECPEP	OvCa9_classI_Rep3	3	574.8375854492188	2	574.873717	1147.73288	-1.3366	-0.00076835	-2.9914	-0.0017196	-4.3279	-0.002488	574.8742446854344	90.929	0.55576	88.848	88.619	89.175	-2.0805					14	10	2	0	0	0	0.02658	1	5674	5674		54.776	16.965	1	17840			16572	7558	13510	13532	18494	18494					0.16492314367656036
HSIIQILVIIQ	11	Unmodified	_HSIIQILVIIQ_					0	0	0		ENSG00000175619|ENST00000309562|OR4B1	ENSG00000175619|ENST00000309562|OR4B1	ENSG00000175619|ENST00000309562|OR4B1	MULTI-MSMS	OvCa9_classI_Rep3	3	426.2707824707031	3	426.271096	1275.79146	1.3494	0.00057519	-1.3701	-0.00058404	-0.020773	-8.8549E-06	426.27044206107996	68.395	1.1503	65.581	65.312	66.462	-2.8144					52	22	4	0	0	0	0.68391	1	2978	2978		35.178	6.7944	1	185040			16573	7558	13511	13533	18495	18495					0.16459370942152418
HSIIQVALVVQ	11	Unmodified	_HSIIQVALVVQ_					0	0	0		ENSG00000174982|ENST00000641692|OR4S2	ENSG00000174982|ENST00000641692|OR4S2	ENSG00000174982|ENST00000641692|OR4S2	MULTI-SECPEP	OvCa9_classI_Rep2	2	403.23199462890625	3	402.911679	1205.71321	2.6462	0.0010662	-2.8973	-0.0011674	-0.25113	-0.00010118	402.9105115326985	87.41	0.59634	85.979	85.642	86.239	-1.4311					16	11	2	0	0	0	0.02625	1	7590	7590		18.531	8.8849	1	11821			16574	7504	13512	13534	18496	18496					0.1185793835691129
HSILRDIL	8	Unmodified	_HSILRDIL_					0	0	0			REV__nc|ENSG00000144504|Q9P2S6-4|ANKMY1	REV__nc|ENSG00000144504|Q9P2S6-4|ANKMY1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.8276672363281	2	483.790184	965.565815	-0.38527	-0.00018639	-0.23581	-0.00011408	-0.62108	-0.00030047	483.7900807732789	77.312	1.7415	74.495	73.86	75.601	-2.8165					52	35	2	0	0	0	0.028476	1	6281	6281		57.811	2.3071	1	117430	+		16575	19915	13513	13535	18497	18497					0.08165466542754984
HSILRDIL	8	Unmodified	_HSILRDIL_					0	0	0			REV__nc|ENSG00000144504|Q9P2S6-4|ANKMY1	REV__nc|ENSG00000144504|Q9P2S6-4|ANKMY1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	483.790184	965.565815	-0.72936	-0.00035286	0.39321	0.00019023	-0.33615	-0.00016263	483.79028150821847	76.304	1.2537	74.45	73.837	75.091	-1.854	-0.022595	0.00014522	NaN	57.811	35	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48375	+		16576	19915	13513	13535							0.08165466542754984
HSILSSKQTF	10	Unmodified	_HSILSSKQTF_					0	0	0			REV__ENSG00000196458|ENST00000360187|ZNF605	REV__ENSG00000196458|ENST00000360187|ZNF605	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.299072265625	2	574.308938	1146.60332	0.57524	0.00033037	3.9134	0.0022475	4.4887	0.0025779	574.310990496056	158.89	0.68019	158.89	158.51	159.19	0					26	13	3	0	0	0	0.026956	1	18611	18611		19.997	1.7347	1	226480	+		16577	22830	13514	13536	18498	18498					0.03588513017712103
HSINEIKKIR	10	Unmodified	_HSINEIKKIR_					0	0	0			REV__nc|ENSG00000115685|Q15435-2|PPP1R7	REV__nc|ENSG00000115685|Q15435-2|PPP1R7	MULTI-MSMS	OvCa99_classI_Rep5	1	619.8739624023438	2	619.372404	1236.73025	0.16264	0.00010074	-1.2197	-0.00075544	-1.057	-0.0006547	619.3716070406476	162.55	0.27477	162.55	162.38	162.65	0					12	7	2	0	0	0	0.65849	1	19067	19067		35.152	1.2304	1	397570	+		16578	18264	13515	13537	18499	18499					0.12135858962687962
HSINEIKKIR	10	Unmodified	_HSINEIKKIR_					0	0	0			REV__nc|ENSG00000115685|Q15435-2|PPP1R7	REV__nc|ENSG00000115685|Q15435-2|PPP1R7	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	619.372404	1236.73025	0.16264	0.00010074	-1.2197	-0.00075544	-1.057	-0.0006547	619.3716070406476	162.55	0.27477	162.55	162.38	162.65	0	0	0	NaN	35.152	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	397570	+		16579	18264	13515	13537							0.12135858962687962
HSIPEEVEI	9	Unmodified	_HSIPEEVEI_					0	0	0		tr|A0A553SR73|A0A553SR73_NIACIBifunctionaltranscriptionalactivator/DNArepairproteinAdaOS=NialliacirculansOX=1397GN=CEQ21_00500PE=4SV=1	tr|A0A553SR73|A0A553SR73_NIACIBifunctionaltranscriptionalactivator/DNArepairproteinAdaOS=NialliacirculansOX=1397GN=CEQ21_00500PE=4SV=1	tr|A0A553SR73|A0A553SR73_NIACIBifunctionaltranscriptionalactivator/DNArepairproteinAdaOS=NialliacirculansOX=1397GN=CEQ21_00500PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	526.7677001953125	2	526.766571	1051.51859	1.8073	0.00095203	0.36007	0.00018967	2.1674	0.0011417	526.7666790543623	85.472	1.2627	85.472	85.169	86.431	0					78	30	5	0	0	0	0.18193	1	8980	8980		79.451	2.6769	1	9357900			16580	34233	13516	13538	18500	18500					-0.005108575189069597
HSIPEEVEI	9	Unmodified	_HSIPEEVEI_					0	0	0		tr|A0A553SR73|A0A553SR73_NIACIBifunctionaltranscriptionalactivator/DNArepairproteinAdaOS=NialliacirculansOX=1397GN=CEQ21_00500PE=4SV=1	tr|A0A553SR73|A0A553SR73_NIACIBifunctionaltranscriptionalactivator/DNArepairproteinAdaOS=NialliacirculansOX=1397GN=CEQ21_00500PE=4SV=1	tr|A0A553SR73|A0A553SR73_NIACIBifunctionaltranscriptionalactivator/DNArepairproteinAdaOS=NialliacirculansOX=1397GN=CEQ21_00500PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	526.766571	1051.51859	0.53126	0.00027985	-1.1121	-0.00058583	-0.58086	-0.00030598	526.7657341132734	87.078	2.0556	85.647	85.015	87.071	-1.4311	0.077976	-0.0018558	NaN	79.451	83	40	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201870			16581	34233	13516	13538							-0.005108575189069597
HSIPEEVEI	9	Unmodified	_HSIPEEVEI_					0	0	0		tr|A0A553SR73|A0A553SR73_NIACIBifunctionaltranscriptionalactivator/DNArepairproteinAdaOS=NialliacirculansOX=1397GN=CEQ21_00500PE=4SV=1	tr|A0A553SR73|A0A553SR73_NIACIBifunctionaltranscriptionalactivator/DNArepairproteinAdaOS=NialliacirculansOX=1397GN=CEQ21_00500PE=4SV=1	tr|A0A553SR73|A0A553SR73_NIACIBifunctionaltranscriptionalactivator/DNArepairproteinAdaOS=NialliacirculansOX=1397GN=CEQ21_00500PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	526.766571	1051.51859	-1.2545	-0.00066083	1.2906	0.00067985	0.036115	1.9024E-05	526.7671159353795	87.727	1.7562	85.55	85.241	86.998	-2.1768	-0.018538	0.00067555	NaN	79.451	74	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	419350			16582	34233	13516	13538							-0.005108575189069597
HSIPEEVEI	9	Unmodified	_HSIPEEVEI_					0	0	0		tr|A0A553SR73|A0A553SR73_NIACIBifunctionaltranscriptionalactivator/DNArepairproteinAdaOS=NialliacirculansOX=1397GN=CEQ21_00500PE=4SV=1	tr|A0A553SR73|A0A553SR73_NIACIBifunctionaltranscriptionalactivator/DNArepairproteinAdaOS=NialliacirculansOX=1397GN=CEQ21_00500PE=4SV=1	tr|A0A553SR73|A0A553SR73_NIACIBifunctionaltranscriptionalactivator/DNArepairproteinAdaOS=NialliacirculansOX=1397GN=CEQ21_00500PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	526.766571	1051.51859	-3.1124	-0.0016395	2.2982	0.0012106	-0.81421	-0.0004289	526.7676151159482	88.208	1.6955	85.605	85.327	87.023	-2.6027	0.036617	0.001737	NaN	79.451	70	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	419130			16583	34233	13516	13538							-0.005108575189069597
HSIVRLLPS	9	Unmodified	_HSIVRLLPS_					0	0	0		ENST00000400246.5_1_22:32241096-32266721:+|nuORF	ENST00000400246.5_1_22:32241096-32266721:+|nuORF	ENST00000400246.5_1_22:32241096-32266721:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	511.3104553222656	2	511.311284	1020.60801	-1.151	-0.0005885	0.56578	0.00028929	-0.58518	-0.00029921	511.31154424823063	53.764	1.5438	50.951	50.578	52.122	-2.8139					82	30	5	0	0	0	0.55011	1	3640	3640		37.812	8.6415	1	1114000			16584	11404	13517	13539	18501	18501					0.09853441951145214
HSKGVTCLSF	10	Unmodified	_HSKGVTCLSF_					0	0	0		ENSG00000122692|ENST00000397149|SMU1;ENST00000379752.5_1_1:157029186-157029948:-|nuORF;nc|ENSG00000122692|Q2TAY7-2|SMU1	ENSG00000122692|ENST00000397149|SMU1	ENSG00000122692|ENST00000397149|SMU1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.7650146484375	2	539.771134	1077.52771	-0.77325	-0.00041738	4.2221	0.002279	3.4489	0.0018616	539.7736332362963	78.907	0.33247	76.155	76.038	76.37	-2.7514					8	6	2	0	0	0	0.026734	1	6370	6370		31.53	0	1	36446			16585	3549	13518	13540	18502	18502					-0.007947874342335126
HSKIIIIKK	9	Unmodified	_HSKIIIIKK_					0	0	0		nc|ENSG00000146674|P17936-2|IGFBP3;ENSG00000146674|ENST00000613132|IGFBP3;ENST00000460477.1_1_7:45956706-45960430:-|nuORF	nc|ENSG00000146674|P17936-2|IGFBP3	nc|ENSG00000146674|P17936-2|IGFBP3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.3153686523438	2	540.368601	1078.72265	-2.2986	-0.0012421	1.4152	0.00076471	-0.88346	-0.0004774	540.3693904521956	88.652	0.6041	86.049	85.781	86.385	-2.6027					17	11	2	0	0	0	0.027462	1	7552	7552		29.15	26.22	1	16794			16586	5301	13519	13541	18503	18503					0.18643751433069156
HSKKEVHRI	9	Unmodified	_HSKKEVHRI_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3295288085938	2	567.330539	1132.64652	-2.3399	-0.0013275	0.99796	0.00056617	-1.3419	-0.00076131	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.68424	1	14769	14769		21.96	3.6978	1	241060	+		16587	20219	13520	13542	18504	18504					0.0855074758567298
HSKKIFVVRP	10	Unmodified	_HSKKIFVVRP_					0	0	0			REV__DLG5|p.Q1509H|1|0.08|ENSG00000151208|chr10:77809667-77809667|C/A|missense_variant	REV__DLG5|p.Q1509H|1|0.08|ENSG00000151208|chr10:77809667-77809667|C/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	605.8720092773438	2	605.874582	1209.73461	-4.4328	-0.0026857	0.14303	8.6658E-05	-4.2897	-0.002599	605.8745511795182	157.17	1.2501	156	155.65	156.91	-1.1707					83	31	4	0	0	0	0.79213	1	13527	13527		19.997	0	1	204530	+		16588	16304	13521	13543	18505	18505					0.13813368176261065
HSKKKDLL	8	Unmodified	_HSKKKDLL_					0	0	0			REV__ENST00000225388.8_1_17:27585167-27585341:-|nuORF	REV__ENST00000225388.8_1_17:27585167-27585341:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	483.82598876953125	2	484.798009	967.581465	-0.504	-0.00024434	-0.088734	-4.3018E-05	-0.59273	-0.00028736	484.79778011396013	77.026	0.78091	75.236	74.946	75.727	-1.7894					25	14	2	0	0	0	0.028476	1	6384	6384		53.351	21.397	1	18957	+		16589	23758	13522	13544	18506	18506					0.09637753059814713
HSKLRQLVR	9	Unmodified	_HSKLRQLVR_					0	0	0			REV__ENSG00000277481|ENST00000620267|PKD1L3	REV__ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MSMS	OvCa9_classI_Rep2	2	568.8544921875	2	568.854181	1135.69381	-5.375	-0.0030576	4.3783	0.0024906	-0.99679	-0.00056703	568.8565433281535	160.72	1.3933	160.5	160.18	161.57	-0.22696					89	27	5	0	0	0	0.63422	1	16336	16336		27.882	2.4321	1	747650	+		16590	23634	13523	13545	18507	18507					0.1313902685665198
HSKRVAVILNE	11	Unmodified	_HSKRVAVILNE_					0	0	0		ENSG00000147996|ENST00000382405|ZNG1E;ENST00000377445.5_9:69238165-69262487:-|nuORF;ENSG00000172785|ENST00000356521|ZNG1A;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000215126|ENST00000377391|ZNG1F;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;nc|ENSG00000196873|Q5JTY5-2|ZNG1C;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENST00000495626.2_9:69245151-69262487:-|nuORF;nc|ENSG00000172785|Q9BRT8-4|ZNG1A;ENST00000492566.1_1_2:114195517-114220159:+|nuORF;ENST00000470192.1_9:69256791-69261296:-|nuORF;nc|ENSG00000172785|Q9BRT8-2|ZNG1A;ENST00000358604.7_1_2:114196636-114253317:+|nuORF;ENST00000476973.2_9:69243634-69261296:-|nuORF;ENSG00000136682|ENST00000259199|ZNG1B;ENST00000490323.5_1_2:114195445-114201441:+|nuORF;ENST00000463627.1_1_2:114195445-114199019:+|nuORF	ENSG00000147996|ENST00000382405|ZNG1E	ENSG00000147996|ENST00000382405|ZNG1E	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3690185546875	2	633.369861	1264.72517	-4.8824	-0.0030923	3.9881	0.002526	-0.89421	-0.00056637	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.71498	1	13201	13201		24.519	0.99649	1	765700			16591	5382	13524	13546	18508	18508					0.10339555100085818
HSKTQILHK	9	Unmodified	_HSKTQILHK_					0	0	0		VPS11|p.H291Tfs*36|1|0.04|ENSG00000160695|chr11:119081155-119081155|C/-|frameshift_variant;nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11;ENST00000529545.1_1_11:118940277-118941110:+|nuORF	VPS11|p.H291Tfs*36|1|0.04|ENSG00000160695|chr11:119081155-119081155|C/-|frameshift_variant	VPS11|p.H291Tfs*36|1|0.04|ENSG00000160695|chr11:119081155-119081155|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	546.30029296875	2	546.31964	1090.62473	-0.11396	-6.2258E-05	-1.2455	-0.00068047	-1.3595	-0.00074272	546.3181450982636	72.135	0.4404	69.533	69.23	69.67	-2.6023					12	8	2	0	0	0	0.027462	1	3405	3405		29.15	18.884	1	23593			16592	6082	13525	13547	18509	18509					0.08303942837073919
HSKTTLKEL	9	Unmodified	_HSKTTLKEL_					0	0	0		nc|ENSG00000157554|P11308-6|ERG;ENST00000468474.5_1_21:39772286-39947633:-|nuORF	nc|ENSG00000157554|P11308-6|ERG	nc|ENSG00000157554|P11308-6|ERG	MULTI-MSMS	OvCa9_classI_Rep2	2	528.8056640625	2	528.806031	1055.59751	0.16667	8.8138E-05	-1.3196	-0.00069779	-1.1529	-0.00060965	528.8052832238033	86.997	1.5544	85.565	85.122	86.676	-1.4311					69	30	3	0	0	0	0.59259	1	7584	7584		32.812	1.2826	1	385910			16593	12330	13526	13548	18510	18510					0.07193414506036788
HSKWLDET	8	Unmodified	_HSKWLDET_					0	0	0		ENSG00000145332|ENST00000273963|KLHL8;nc|ENSG00000145332|Q9P2G9-2|KLHL8	ENSG00000145332|ENST00000273963|KLHL8	ENSG00000145332|ENST00000273963|KLHL8	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.27166748046875	2	508.245806	1014.47706	2.5895	0.0013161	-1.8545	-0.00094256	0.73497	0.00037355	508.24492879801903	75.628	1.1509	75.628	75.087	76.238	0					55	28	3	0	0	0	0.028476	1	7546	7546		21.96	0	1	711990			16594	5215	13527	13549	18511	18511					-0.029599934875591316
HSLACLLTPAW	11	Unmodified	_HSLACLLTPAW_					0	0	0			REV__ENST00000576679.1_2_17:79781125-79782334:-|nuORF	REV__ENST00000576679.1_2_17:79781125-79782334:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	605.8485717773438	2	606.315709	1210.61686	2.4606	0.0014919	-2.7435	-0.0016634	-0.28282	-0.00017148	606.3141289919049	97.889	0.94083	97.889	97.611	98.552	0					33	21	2	0	0	0	0.025909	1	10747	10747		19.997	5.8596	1	1223400	+		16595	27787	13528	13550	18512	18512					0.019980475252850738
HSLAGQTYAV	10	Unmodified	_HSLAGQTYAV_					0	0	0		ENST00000557932.5_1_15:102506277-102513446:+|nuORF;nc|ENSG00000185596|C4AMC7|WASH3P;nc|ENSG00000291134|Q6VEQ5|WASH2P;ENSG00000181404|ENST00000696149|WASHC1;ENST00000400706.3_1_12:78799-87272:+|nuORF;ENST00000559163.6_1_15:102506277-102512065:+|nuORF;ENST00000558686.5_1_15:102506217-102512799:+|nuORF;ENST00000559884.5_1_15:102506277-102506794:+|nuORF	ENST00000557932.5_1_15:102506277-102513446:+|nuORF	ENST00000557932.5_1_15:102506277-102513446:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8255004882812	2	523.766906	1045.51926	1.774	0.00092915	4.2909	0.0022475	6.0649	0.0031766	523.7684871656232	77.054	0.53724	77.054	76.799	77.336	0					35	12	4	0	0	0	0.026891	1	7786	7786		31.53	8.4873	1	1126900			16596	7930	13529	13551	18513	18513					-0.0016801807921638101
HSLALDRPENG	11	Unmodified	_HSLALDRPENG_					0	0	0			REV__ENST00000466009.5_1_9:131452591-131452723:+|nuORF	REV__ENST00000466009.5_1_9:131452591-131452723:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	605.278076171875	2	604.804551	1207.59455	-0.55789	-0.00033741	3.4149	0.0020653	2.857	0.0017279	604.8070547357314	118.71	0.31583	117.36	117.1	117.42	-1.3444					6	5	2	0	0	0	0.026089	1	11117	11117		22.58	8.4425	1	3388.5	+		16597	26182	13530	13552	18514	18514					-0.0009446061876587919
HSLALNYIQD	10	Unmodified	_HSLALNYIQD_					0	0	0			REV__tr|A0A553SUG4|A0A553SUG4_NIACIHTHmerR-typedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06950PE=4SV=1	REV__tr|A0A553SUG4|A0A553SUG4_NIACIHTHmerR-typedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06950PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	587.2952270507812	2	587.29857	1172.58259	-1.8304	-0.001075	-4.0507	-0.002379	-5.8812	-0.003454	587.2961004815837	119.51	2.07	118.17	117.83	119.9	-1.3444					114	39	5	0	0	0	0.5635	1	11228	11228		46.457	12.284	1	737630	+		16598	31071	13531	13553	18515	18515					0.003199226380502296
HSLARKKL	8	Unmodified	_HSLARKKL_					0	0	0			REV__REXO1|p.K812Qfs*41|1|0.1|ENSG00000079313|chr19:1820357-1820358|-/C|frameshift_variant	REV__REXO1|p.K812Qfs*41|1|0.1|ENSG00000079313|chr19:1820357-1820358|-/C|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	476.2308044433594	2	476.806168	951.597784	-0.12969	-6.1836E-05	0.18603	8.87E-05	0.056342	2.6864E-05	476.8060918683268	43.221	0.98174	43.221	43.014	43.995	0					32	22	3	0	0	0	0.028476	1	2815	2815		25.45	7.1258	1	681550	+		16599	17040	13532	13554	18516	18516					0.12004879016558334
HSLAYVPFFL	10	Unmodified	_HSLAYVPFFL_					0	0	0			REV__ENST00000512914.1_1_4:6643196-6643628:+|nuORF	REV__ENST00000512914.1_1_4:6643196-6643628:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.319091796875	2	597.321317	1192.62808	2.3063	0.0013776	-2.1705	-0.0012965	0.13583	8.1135E-05	597.8218860884311	120.31	1.3828	120.31	120.09	121.47	0					43	32	2	0	0	0	0.026752	1	13829	13829		27.882	0	1	580780	+		16600	26973	13533	13555	18517	18517					0.0394719289108707
HSLAYVPFFL	10	Unmodified	_HSLAYVPFFL_					0	0	0			REV__ENST00000512914.1_1_4:6643196-6643628:+|nuORF	REV__ENST00000512914.1_1_4:6643196-6643628:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	597.321317	1192.62808	-1.753	-0.0010471	-1.4488	-0.00086543	-3.2018	-0.0019125	597.3201027233632	120.19	0.93795	120.02	119.64	120.58	-0.17138	-0.10041	0.0027944	NaN	27.882	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88467	+		16601	26973	13533	13555							0.0394719289108707
HSLAYVPFFL	10	Unmodified	_HSLAYVPFFL_					0	0	0			REV__ENST00000512914.1_1_4:6643196-6643628:+|nuORF	REV__ENST00000512914.1_1_4:6643196-6643628:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	597.321317	1192.62808	2.3186	0.0013849	-5.8211	-0.003477	-3.5025	-0.0020921	597.3176934336262	121.1	1.041	120.07	119.71	120.75	-1.0271	-0.047901	-0.0024288	NaN	27.882	35	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92773	+		16602	26973	13533	13555							0.0394719289108707
HSLEHQES	8	Unmodified	_HSLEHQES_					0	0	0			REV__ENSG00000146378|ENST00000367931|TAAR2	REV__ENSG00000146378|ENST00000367931|TAAR2	MULTI-MSMS	OvCa99_classI_Rep5	1	483.7176818847656	2	483.717413	965.420273	2.0893	0.0010106	-2.4696	-0.0011946	-0.38025	-0.00018393	483.71602778061714	76.697	0.97109	76.697	76.365	77.336	0					55	23	3	0	0	0	0.7224	1	7694	7694		38.806	1.647	1	1964600	+		16603	20012	13534	13556	18518	18518					-0.06382041044082598
HSLFFTCLF	9	Unmodified	_HSLFFTCLF_					0	0	0			REV__ENST00000536441.6_2_11:94905351-94905537:-|nuORF	REV__ENST00000536441.6_2_11:94905351-94905537:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.251953125	2	557.773145	1113.53174	2.4225	0.0013512	-1.9299	-0.0010765	0.49259	0.00027475	557.7722252272	76.812	0.32172	76.812	76.639	76.961	0					10	7	2	0	0	0	0.027462	1	7700	7700		30.504	6.3009	1	151070	+		16604	27296	13535	13557	18519	18519					-0.02048697940540478
HSLLLLVVQ	9	Unmodified	_HSLLLLVVQ_					0	0	0			REV__ENST00000374500.9_1_6:33385387-33385937:-|nuORF	REV__ENST00000374500.9_1_6:33385387-33385937:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.3127136230469	2	511.32386	1020.63317	-1.0785	-0.00055144	2.2563	0.0011537	1.1778	0.00060224	511.32534828767837	54.2	0.30717	50.953	50.774	51.081	-3.2474					8	5	2	0	0	0	0.027462	1	3349	3349		23.042	0	1	27129	+		16605	25063	13536	13558	18520	18520					0.12367496753722662
HSLLPCAPR	9	Unmodified	_HSLLPCAPR_					0	0	0			REV__GAPDHS|p.T259Sfs*103|1|0.07|ENSG00000105679|chr19:35543373-35543374|-/GCTTTGCAGGGCAGCCCATTCATTCATT|frameshift_variant	REV__GAPDHS|p.T259Sfs*103|1|0.07|ENSG00000105679|chr19:35543373-35543374|-/GCTTTGCAGGGCAGCCCATTCATTCATT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	497.27130126953125	2	497.268561	992.52257	-0.32122	-0.00015973	0.36526	0.00018163	0.044041	2.19E-05	497.2684732356221	52.524	2.2183	52.524	51.953	54.172	0					131	51	3	0	0	0	0.48324	1	4138	4138		44.117	5.3107	1	1537400	+		16606	28150	13537	13559	18521	18521					0.026009534938111756
HSLLQGKLRFS	11	Unmodified	_HSLLQGKLRFS_					0	0	0			REV__nc|ENSG00000197362|Q8N393-2|ZNF786	REV__nc|ENSG00000197362|Q8N393-2|ZNF786	MULTI-MSMS	OvCa9_classI_Rep3	3	429.2510681152344	3	429.250695	1284.73025	-0.56405	-0.00024212	0.10645	4.5692E-05	-0.45761	-0.00019643	429.25076321988007	91.88	1.9808	89.856	89.534	91.514	-2.0241					135	40	5	0	0	0	0.67389	2	5776	5771;5776		37.94	5.9055	1	3207800	+		16607	22914	13538	13560	18522;18523	18523					0.09927858962691971
HSLLTIPLL	9	Unmodified	_HSLLTIPLL_					0	0	0			REV__ENST00000578618.5_1_18:5398654-5398756:-|nuORF	REV__ENST00000578618.5_1_18:5398654-5398756:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.7833557128906	2	503.81841	1005.62227	-1.1502	-0.0005795	-2.3852	-0.0012017	-3.5354	-0.0017812	503.81716905316995	44.073	0.57417	44.073	43.866	44.44	0					21	12	2	0	0	0	0.027449	1	2951	2951		40.573	29.062	1	203310	+		16608	27804	13539	13561	18524	18524					0.11968094379426475
HSLPLALVQ	9	Unmodified	_HSLPLALVQ_					0	0	0			REV__ENST00000460676.5_1_20:3193850-3194650:+|nuORF	REV__ENST00000460676.5_1_20:3193850-3194650:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.2937316894531	2	489.292559	976.570566	0.42184	0.00020641	-1.1367	-0.00055619	-0.71488	-0.00034979	489.29193832315656	60.999	1.7478	57.569	57.144	58.891	-3.43					60	35	2	0	0	0	0.53957	1	4143	4143		38.806	0	1	1072400	+		16609	26088	13540	13562	18525	18525					0.08134350685509162
HSLRILLLS	9	Unmodified	_HSLRILLLS_					0	0	0			REV__ENST00000446151.6_2_2:178097196-178097988:-|nuORF	REV__ENST00000446151.6_2_2:178097196-178097988:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.8080444335938	2	526.334759	1050.65496	0.36121	0.00019012	-0.76121	-0.00040065	-0.4	-0.00021053	526.3342560936292	67.224	0.43388	67.224	67.014	67.448	0					15	8	2	0	0	0	0.027462	1	6292	6292		19.997	0	1	614480	+		16610	25897	13541	13563	18526	18526					0.13166301502269562
HSLRLQAN	8	Unmodified	_HSLRLQAN_					0	0	0			REV__ENST00000483237.1_1_1:155891178-155891799:-|nuORF	REV__ENST00000483237.1_1_1:155891178-155891799:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	469.2315673828125	2	469.761958	937.509363	0.24097	0.0001132	2.9953	0.0014071	3.2362	0.0015203	469.76248810865144	71.867	0.41194	71.867	71.589	72	0					11	9	2	0	0	0	0.028476	1	6988	6988		37.159	0	1	71158	+		16611	26520	13542	13564	18527	18527					0.03810838706067443
HSLRQFELT	9	Unmodified	_HSLRQFELT_					0	0	0		ENST00000563963.1_1_15:43687726-43694213:+|nuORF	ENST00000563963.1_1_15:43687726-43694213:+|nuORF	ENST00000563963.1_1_15:43687726-43694213:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	565.7982788085938	2	565.80128	1129.58801	-2.4631	-0.0013936	-1.339	-0.00075759	-3.802	-0.0021512	565.8004097051485	35.939	0.94262	33.229	32.95	33.893	-2.7097					48	18	4	0	0	0	0.55588	1	1518	1518		37.159	0.71236	1	164810			16612	13796	13543	13565	18528	18528					0.02839646220513714
HSLSEKYS	8	Unmodified	_HSLSEKYS_					0	0	0		ENST00000510190.1_1_4:77880016-77880280:-|nuORF;ENST00000441872.2_1_10:121442696-121443334:-|nuORF;ENSG00000136810|ENST00000374517|TXN	ENST00000510190.1_1_4:77880016-77880280:-|nuORF	ENST00000510190.1_1_4:77880016-77880280:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.28570556640625	2	475.732532	949.45051	0.68363	0.00032523	1.8767	0.0008928	2.5603	0.001218	475.73229473771386	59.653	0.49164	56.261	56.002	56.494	-3.392					12	9	2	0	0	0	0.028476	1	3965	3965		33.516	11.813	1	14618			16613	4515	13544	13566	18529	18529					-0.02623682378907688
HSLSLLPLL	9	Unmodified	_HSLSLLPLL_					0	0	0		ENST00000466662.1_1_X:152937579-152938301:-|nuORF;ENST00000472324.5_1_X:152937579-152938531:-|nuORF;ENST00000466638.5_1_X:152936878-152938301:-|nuORF	ENST00000466662.1_1_X:152937579-152938301:-|nuORF	ENST00000466662.1_1_X:152937579-152938301:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.811767578125	2	496.810585	991.606617	-0.6855	-0.00034056	0.38297	0.00019026	-0.30253	-0.0001503	496.81062737885446	117.51	1.3108	116.17	115.84	117.15	-1.3444					65	24	4	0	0	0	0.52083	1	10995	10995		40.573	0	1	177540			16614	12295	13545	13567	18530	18530					0.11047807862382797
HSLTLRRKATE	11	Unmodified	_HSLTLRRKATE_					0	0	0		ENSG00000131042|ENST00000314446|LILRB2;nc|ENSG00000131042|Q8N423-1|LILRB2;ENST00000455108.5_1_19:54778539-54780113:-|nuORF;nc|ENSG00000131042|Q8N423-4|LILRB2;nc|ENSG00000204577|O75022|LILRB3;ENSG00000204577|ENST00000445347|LILRB3;nc|ENSG00000204577|O75022-3|LILRB3;nc|ENSG00000204577|O75022-2|LILRB3	ENSG00000131042|ENST00000314446|LILRB2;nc|ENSG00000204577|O75022|LILRB3	ENSG00000131042|ENST00000314446|LILRB2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	437.2602233886719	3	437.921237	1310.74188	-0.2678	-0.00011727	0.92895	0.00040681	0.66115	0.00028953	437.92123846107063	40.035	0.55801	37.081	36.863	37.421	-2.9541					21	10	4	0	0	0	0.02625	1	1713	1713		13.508	0	1	11956			16615	4040;9004	13546	13568	18531	18531					0.09894055986023886
HSLVIITKN	9	Unmodified	_HSLVIITKN_					0	0	0			REV__nc|ENSG00000182477|P59922|OR2B8P	REV__nc|ENSG00000182477|P59922|OR2B8P	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.278564453125	2	512.811116	1023.60768	0.34107	0.0001749	-1.0071	-0.00051647	-0.66607	-0.00034157	512.810473684969	113.48	1.237	112.03	111.7	112.94	-1.4461					55	24	4	0	0	0	0.027462	1	10548	10548		42.396	24.134	1	201150	+		16616	29040	13547	13569	18532	18532					0.09682022231265819
HSLVIRGAS	9	Unmodified	_HSLVIRGAS_					0	0	0		LGR4|p.L659Gfs*16|1|0.09|ENSG00000205213|chr11:27368720-27368748|AAAAGGGCAGCAACCCGGAACTGTTTGAG/-|frameshift_variant;LGR4|p.F803Sfs*13|1|0.15|ENSG00000205213|chr11:27368315-27368315|A/-|frameshift_variant;nc|ENSG00000205213|Q9BXB1-2|LGR4;ENSG00000205213|ENST00000379214|LGR4	LGR4|p.L659Gfs*16|1|0.09|ENSG00000205213|chr11:27368720-27368748|AAAAGGGCAGCAACCCGGAACTGTTTGAG/-|frameshift_variant	LGR4|p.L659Gfs*16|1|0.09|ENSG00000205213|chr11:27368720-27368748|AAAAGGGCAGCAACCCGGAACTGTTTGAG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	470.2721252441406	2	470.272158	938.529764	-2.3445	-0.0011025	2.1605	0.001016	-0.18397	-8.6517E-05	470.2730881944102	145.73	1.4391	145.51	145.08	146.52	-0.22696					62	28	4	0	0	0	0.69123	1	14688	14688		20.947	3.582	1	115570			16617	9058	13548	13570	18533	18533					0.058040093658974
HSLVPLARTPG	11	Unmodified	_HSLVPLARTPG_					0	0	0			REV__ENST00000491293.1_1_1:228290129-228290330:-|nuORF	REV__ENST00000491293.1_1_1:228290129-228290330:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.8148803710938	2	574.332747	1146.65094	-0.64911	-0.00037281	2.9612	0.0017007	2.3121	0.0013279	574.3345604045998	42.759	1.0758	42.759	42.068	43.143	0					43	24	2	0	0	0	0.02557	1	2806	2806		24.519	5.4157	1	164290	+		16618	26671	13549	13571	18534	18534					0.08348212008536393
HSLVPLARTPG	11	Unmodified	_HSLVPLARTPG_					0	0	0			REV__ENST00000491293.1_1_1:228290129-228290330:-|nuORF	REV__ENST00000491293.1_1_1:228290129-228290330:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.8148803710938	2	574.332747	1146.65094	-0.89856	-0.00051607	3.2991	0.0018948	2.4006	0.0013787	574.3343763036336	43.286	1.1099	43.286	42.97	44.08	0					44	25	2	0	0	0	0.02557	1	2806	2806		24.519	5.4157	1	131140	+		16619	26671	13549	13571	18535	18535					0.08348212008536393
HSMKEVIK	8	Unmodified	_HSMKEVIK_					0	0	0			REV__tr|A0A7D6ZP71|A0A7D6ZP71_9CLOTElectrontransferflavoproteinsmallsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_19090PE=4SV=1	REV__tr|A0A7D6ZP71|A0A7D6ZP71_9CLOTElectrontransferflavoproteinsmallsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_19090PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.25714111328125	2	486.27077	970.526987	-2.7241	-0.0013246	-0.70659	-0.00034359	-3.4307	-0.0016682	486.2709529666212	104.13	0.21516	104.13	104.06	104.28	0					5	4	2	0	0	0	0.028476	1	11654	11654		47.916	18.766	1	48552	+		16620	32130	13550	13572	18536	18536					0.0405441791673411
HSMPIDSG	8	Unmodified	_HSMPIDSG_					0	0	0			REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|222|1|anti-sense	REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|222|1|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	422.1860046386719	2	422.186903	842.359253	-0.37871	-0.00015988	-3.708	-0.0015655	-4.0867	-0.0017254	422.1852282727745	50.571	0.83225	50.571	50.288	51.12	0					50	18	4	0	0	0	0.7043	1	3862	3862		42.474	3.6683	1	3977200	+		16621	28201	13551	13573	18537	18537					-0.0682326934786488
HSNSPWWLN	9	Unmodified	_HSNSPWWLN_					0	0	0		nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH;ENST00000523276.1_1_6:146240471-146248402:-|nuORF;ENST00000519632.5_1_6:146239221-146248402:-|nuORF;ENST00000433355.6_1_6:146231577-146267398:-|nuORF	nc|ENSG00000146414|Q149N8-4|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.3174438476562	2	570.764697	1139.51484	-0.69023	-0.00039396	-1.6817	-0.00095985	-2.3719	-0.0013538	571.2659483911463	33.849	0.19219	33.849	33.728	33.921	0					5	3	2	0	0	0	0.027462	1	1579	1579		29.15	10.825	1	13785			16622	5290	13552	13574	18538	18538					-0.04933482502087827
HSNVSLKEPDI	11	Unmodified	_HSNVSLKEPDI_					0	0	0			REV__ENSG00000004779|ENST00000007516|NDUFAB1	REV__ENSG00000004779|ENST00000007516|NDUFAB1	MULTI-SECPEP	OvCa9_classI_Rep2	2	413.89501953125	3	413.550698	1237.63027	0.24116	9.973E-05	-2.4218	-0.0010015	-2.1806	-0.0009018	413.5499453147923	47.236	0.69296	44.526	44.291	44.984	-2.7097					16	13	2	0	0	0	0.025958	1	2843	2843		14.779	5.567	1	13248	+		16623	16381	13553	13575	18539	18539					0.020955768382464157
HSPALKAIRDR	11	Unmodified	_HSPALKAIRDR_					0	0	0		ENSG00000213337|ENST00000393537|ANKRD39	ENSG00000213337|ENST00000393537|ANKRD39	ENSG00000213337|ENST00000393537|ANKRD39	MULTI-MSMS	OvCa9_classI_Rep3	3	632.3610229492188	2	632.367653	1262.72075	-6.4512	-0.0040795	-3.3593	-0.0021243	-9.8105	-0.0062039	632.3653623166105	163.09	0.65668	161.69	161.48	162.14	-1.3925					38	14	3	0	0	0	0.70142	1	14215	14215		29.17	0	1	85467			16624	9124	13554	13576	18540	18540					0.09990090677183616
HSPALKAIRDR	11	Unmodified	_HSPALKAIRDR_					0	0	0		ENSG00000213337|ENST00000393537|ANKRD39	ENSG00000213337|ENST00000393537|ANKRD39	ENSG00000213337|ENST00000393537|ANKRD39	MULTI-MSMS	OvCa9_classI_Rep4_	4	632.3633422851562	2	632.367653	1262.72075	-6.3099	-0.0039902	-3.4327	-0.0021707	-9.7427	-0.0061609	632.3652537766649	163.68	0.89803	162.05	161.68	162.57	-1.6336					70	24	4	0	0	0	0.70761	1	16170	16170		27.047	1.4733	1	384570			16625	9124	13554	13576	18541	18541					0.09990090677183616
HSPFNKMDIE	10	Unmodified	_HSPFNKMDIE_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	608.3471069335938	2	609.284605	1216.55466	2.3777	0.0014487	-0.65663	-0.00040007	1.721	0.0010486	609.2844452253986	79.892	0.24868	79.892	79.783	80.031	0					7	5	2	0	0	0	0.027241	1	8162	8162		18.262	5.4504	1	122640	+		16626	28942	13555	13577	18542	18542					-0.04495723613717928
HSPLHFRPP	9	Unmodified	_HSPLHFRPP_					0	0	0		nc|ENSG00000241370|Q9H633-3|RPP21	nc|ENSG00000241370|Q9H633-3|RPP21	nc|ENSG00000241370|Q9H633-3|RPP21	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.338623046875	2	544.293425	1086.5723	1.9326	0.0010519	2.9597	0.0016109	4.8923	0.0026628	544.2945159023341	106.69	0.52595	106.69	106.45	106.97	0					28	11	4	0	0	0	0.027462	1	12040	12040		27.882	0	1	454840			16627	15337	13556	13578	18543	18543					0.032474044941182
HSPLPASLRR	10	Unmodified	_HSPLPASLRR_					0	0	0		ENST00000505306.5_1_17:48167246-48167522:+|nuORF	ENST00000505306.5_1_17:48167246-48167522:+|nuORF	ENST00000505306.5_1_17:48167246-48167522:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3300170898438	2	567.330539	1132.64652	-0.48412	-0.00027465	-0.73588	-0.00041748	-1.22	-0.00069214	567.3299446868054	145.54	4.8872	144.11	142.68	147.57	-1.4357					247	95	4	0	0	0	0.73378	1	14218	14218		26.693	3.1702	1	208760			16628	12893	13557	13579	18544	18544					0.08550747585650242
HSPPADLLLT	10	Unmodified	_HSPPADLLLT_					0	0	0		ENSG00000189139|ENST00000340446|FSCB	ENSG00000189139|ENST00000340446|FSCB	ENSG00000189139|ENST00000340446|FSCB	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.2758178710938	2	532.292756	1062.57096	2.7654	0.001472	0.33517	0.00017841	3.1006	0.0016504	532.2924596871493	96.274	0.50452	96.274	95.913	96.418	0					18	11	2	0	0	0	0.026802	1	10504	10504		19.997	0	1	368060			16629	8538	13558	13580	18545	18545					0.04217725614716983
HSPYTGELAP	10	Unmodified	_HSPYTGELAP_					0	0	0			REV__NBR1|p.T456P|1|0.19|ENSG00000188554|chr17:43193480-43193480|A/C|missense_variant	REV__NBR1|p.T456P|1|0.19|ENSG00000188554|chr17:43193480-43193480|A/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3130493164062	2	536.258914	1070.50327	-0.10093	-5.4124E-05	-2.2535	-0.0012085	-2.3544	-0.0012626	536.2574420379559	51.206	0.34142	51.206	50.949	51.291	0					11	7	2	0	0	0	0.027021	1	3922	3922		29.15	7.1897	1	145830	+		16630	28699	13559	13581	18546	18546					-0.029157243160852886
HSQDSNLHK	9	Unmodified	_HSQDSNLHK_					0	0	0		ENSG00000283439|ENST00000636696|SPEM3	ENSG00000283439|ENST00000636696|SPEM3	ENSG00000283439|ENST00000636696|SPEM3	MULTI-SECPEP	OvCa9_classI_Rep2	2	533.7978515625	2	533.257237	1064.49992	0.2621	0.00013977	3.4799	0.0018557	3.742	0.0019954	533.2580992883778	65.802	0.49763	63.106	62.821	63.319	-2.6958					19	9	3	0	0	0	0.027462	1	5046	5046		40.778	12.896	1	27806			16631	9615	13560	13582	18547	18547					-0.029749743701131592
HSQGGLRSLMQ	11	Unmodified	_HSQGGLRSLMQ_					0	0	0		nc|ENSG00000081177|Q9NVH0-2|EXD2;ENSG00000081177|ENST00000685843|EXD2	nc|ENSG00000081177|Q9NVH0-2|EXD2	nc|ENSG00000081177|Q9NVH0-2|EXD2	MULTI-MSMS	OvCa9_classI_Rep2	2	607.3099975585938	2	607.308946	1212.60334	1.2734	0.00077333	1.6611	0.0010088	2.9345	0.0017821	607.3098713092123	88.651	1.9735	87.283	86.592	88.565	-1.3676					100	39	3	0	0	0	0.72324	1	7788	7788		21.686	0.73882	1	588040			16632	1656	13561	13583	18548	18548					0.005541897460489054
HSQLNFVTT	9	Unmodified	_HSQLNFVTT_					0	0	0			REV__ENST00000482655.2_1_13:28008892-28009731:+|nuORF	REV__ENST00000482655.2_1_13:28008892-28009731:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	522.8247680664062	2	523.766906	1045.51926	-0.97248	-0.00050935	1.7442	0.00091357	0.77174	0.00040421	524.2686393767258	81.948	1.0557	79.652	78.983	80.039	-2.2963					50	20	4	0	0	0	0.027418	1	4538	4538		44.377	0	1	49148	+		16633	18575	13562	13584	18549	18549					-0.0016801807919364364
HSQPIKEVGFN	11	Unmodified	_HSQPIKEVGFN_					0	0	0			REV__ENSG00000115365|ENST00000450366|LANCL1	REV__ENSG00000115365|ENST00000450366|LANCL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	628.6373901367188	2	628.325119	1254.63569	2.6011	0.0016343	3.9906	0.0025074	6.5916	0.0041417	628.3264896202091	75.054	0.37108	75.054	74.88	75.251	0					10	8	2	0	0	0	0.025457	1	7433	7433		36.447	0	1	83927	+		16634	18240	13563	13585	18550	18550					0.01855300420720596
HSQSSGNDK	9	Unmodified	_HSQSSGNDK_					0	0	0		ENST00000438630.5_1_2:24272613-24277353:+|nuORF	ENST00000438630.5_1_2:24272613-24277353:+|nuORF	ENST00000438630.5_1_2:24272613-24277353:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	480.21429443359375	2	480.212495	958.410437	2.0898	0.0010035	1.6224	0.00077907	3.7121	0.0017826	480.2131363597697	112.08	1.2814	110.97	110.65	111.93	-1.1038					59	25	3	0	0	0	0.56189	1	8165	8165		36.447	5.9431	1	400920			16635	11903	13564	13586	18551	18551					-0.07043229049463662
HSRDFGLL	8	Unmodified	_HSRDFGLL_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.88018798828125	2	472.751059	943.487565	-0.32819	-0.00015515	-0.35076	-0.00016582	-0.67895	-0.00032097	472.7506847839624	39.251	0.35742	39.251	39.063	39.42	0					13	7	2	0	0	0	0.028476	1	2294	2294		37.159	9.2769	1	74256	+		16636	19465	13565	13587	18552	18552					0.013560339575292346
HSRERGIIFS	10	Unmodified	_HSRERGIIFS_					0	0	0		ENST00000524878.1_1_11:128774426-128775916:-|nuORF	ENST00000524878.1_1_11:128774426-128775916:-|nuORF	ENST00000524878.1_1_11:128774426-128775916:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	601.3222045898438	2	601.325454	1200.63635	-1.8433	-0.0011084	-3.9232	-0.0023591	-5.7665	-0.0034676	601.3230558144452	149	1.451	147.56	147.43	148.88	-1.4344					48	29	2	0	0	0	0.79213	1	14711	14711		19.997	2.6318	1	24481			16637	13173	13566	13588	18553	18553					0.04406139860429903
HSRERGIIFS	10	Unmodified	_HSRERGIIFS_					0	0	0		ENST00000524878.1_1_11:128774426-128775916:-|nuORF	ENST00000524878.1_1_11:128774426-128775916:-|nuORF	ENST00000524878.1_1_11:128774426-128775916:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	601.325454	1200.63635	-3.0479	-0.0018328	-2.9281	-0.0017607	-5.9759	-0.0035935	601.3236561673943	147.54	1.9451	147.31	146.22	148.17	-0.22696	-0.12798	0.0005555	NaN	19.997	64	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23438			16638	13173	13566	13588							0.04406139860429903
HSRGESTSM	9	Unmodified	_HSRGESTSM_					0	0	0		nc|ENSG00000173264|Q96N19-3|GPR137;ENSG00000173264|ENST00000438980|GPR137	nc|ENSG00000173264|Q96N19-3|GPR137	nc|ENSG00000173264|Q96N19-3|GPR137	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.7695007324219	2	496.216723	990.418893	-0.8622	-0.00042784	-3.5551	-0.0017641	-4.4173	-0.002192	496.2147303920596	66.206	0.31266	66.206	66.059	66.372	0					14	7	2	0	0	0	0.027462	1	6110	6110		24.519	3.5723	1	221960			16639	7364	13567	13589	18554	18554					-0.07669998404492162
HSRGPDMEV	9	Unmodified	_HSRGPDMEV_					0	0	0			REV__ENST00000569487.1_1_16:87742077-87743168:-|nuORF	REV__ENST00000569487.1_1_16:87742077-87743168:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.27294921875	2	514.234916	1026.45528	-0.56513	-0.00029061	-3.2038	-0.0016475	-3.7689	-0.0019381	514.2342508922726	48.199	0.38777	48.199	47.984	48.372	0					11	8	2	0	0	0	0.027462	1	3511	3511		12.207	0	1	130650	+		16640	27726	13568	13590	18555	18555					-0.056891215077939705
HSRKAKVVAI	10	Unmodified	_HSRKAKVVAI_					0	0	0		tr|A0A7D6ZK20|A0A7D6ZK20_9CLOTMurR/RpiRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_10875PE=4SV=1	tr|A0A7D6ZK20|A0A7D6ZK20_9CLOTMurR/RpiRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_10875PE=4SV=1	tr|A0A7D6ZK20|A0A7D6ZK20_9CLOTMurR/RpiRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_10875PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.3113403320312	2	554.851107	1107.68766	-0.070236	-3.8971E-05	-0.13092	-7.2644E-05	-0.20116	-0.00011161	554.8508851905572	30.111	0.8457	30.111	29.935	30.781	0					35	16	4	0	0	0	0.027228	1	1122	1122		6.3127	1.9964	1	403000			16641	35656	13569	13591	18556	18556					0.13812508625142073
HSRKKANI	8	Unmodified	_HSRKKANI_					0	0	0		nc|ENSG00000164251|P55085|F2RL1;ENSG00000164251|ENST00000296677|F2RL1	nc|ENSG00000164251|P55085|F2RL1	nc|ENSG00000164251|P55085|F2RL1	MULTI-SECPEP	OvCa9_classI_Rep3	3	478.284423828125	2	477.2856	952.556647	0.28115	0.00013419	2.3542	0.0011236	2.6354	0.0012578	477.28659277496985	88.889	1.6909	86.758	86.315	88.006	-2.1309					49	33	2	0	0	0	0.028476	1	5544	5544		24.203	13.337	1	332090			16642	6435	13570	13592	18557	18557					0.07847117977087237
HSRKKCPEE	9	Unmodified	_HSRKKCPEE_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	MULTI-MSMS	OvCa9_classI_Rep2	2	557.2801513671875	2	557.277115	1112.53968	2.2653	0.0012624	3.3017	0.00184	5.567	0.0031024	557.2788656125713	28.641	0.69712	25.931	25.759	26.456	-2.7097					25	14	2	0	0	0	0.62352	1	616	616		29.15	0	1	46716	+		16643	29026	13571	13593	18558	18558					-0.01209170691026884
HSRPLASRC	9	Unmodified	_HSRPLASRC_					0	0	0		ENST00000439647.5_1_3:183900651-183901309:+|nuORF	ENST00000439647.5_1_3:183900651-183901309:+|nuORF	ENST00000439647.5_1_3:183900651-183901309:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.7435913085938	2	513.766717	1025.51888	1.6173	0.00083093	0.19482	0.00010009	1.8121	0.00093102	513.7665848236634	126.66	0.40196	126.66	126.51	126.91	0					12	8	2	0	0	0	0.027462	1	14648	14648		45.972	11.8	1	80357			16644	11919	13572	13594	18559	18559					0.0071428371998081275
HSRPRRPTC	9	Unmodified	_HSRPRRPTC_					0	0	0			REV__ENST00000504435.1_1_4:887824-888280:-|nuORF	REV__ENST00000504435.1_1_4:887824-888280:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.829345703125	2	555.290891	1108.56723	-0.2495	-0.00013854	3.8225	0.0021226	3.573	0.0019841	555.2922519515132	60.016	0.19786	60.016	59.918	60.116	0					6	4	2	0	0	0	0.027462	1	5225	5225		27.882	5.9224	1	277400	+		16645	26859	13573	13595	18560	18560					0.017287773598809508
HSRTHCRVL	9	Unmodified	_HSRTHCRVL_					0	0	0		ENST00000543714.5_1_11:73692668-73693858:-|nuORF;ENST00000310473.7_1_11:73692559-73694259:-|nuORF	ENST00000543714.5_1_11:73692668-73693858:-|nuORF	ENST00000543714.5_1_11:73692668-73693858:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.3267822265625	2	554.793266	1107.57198	3.2093	0.0017805	-1.0913	-0.00060543	2.118	0.0011751	554.7924417575772	97.38	0.55812	97.38	97.008	97.566	0					28	12	3	0	0	0	0.027462	1	10687	10687		26.693	1.1189	1	1662300			16646	10287	13574	13596	18561	18561					0.022496615026284417
HSRTVIPIL	9	Unmodified	_HSRTVIPIL_					0	0	0		nc|ENSG00000113761|Q9UL40-2|ZNF346	nc|ENSG00000113761|Q9UL40-2|ZNF346	nc|ENSG00000113761|Q9UL40-2|ZNF346	MULTI-MSMS	OvCa9_classI_Rep2	2	518.3162841796875	2	518.319109	1034.62366	0.019249	9.9771E-06	-4.2946	-0.002226	-4.2753	-0.002216	518.3168525159718	135.53	0.8831	135.3	134.88	135.76	-0.22696					34	17	2	0	0	0	0.56889	1	13481	13481		35.618	8.8222	1	319640			16647	14968	13575	13597	18562	18562					0.10773728468188892
HSRTVKNVSS	10	Unmodified	_HSRTVKNVSS_					0	0	0		ENST00000394563.4_1_X:85340081-85340624:-|nuORF	ENST00000394563.4_1_X:85340081-85340624:-|nuORF	ENST00000394563.4_1_X:85340081-85340624:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	557.7996826171875	2	557.801811	1113.58907	-0.61049	-0.00034053	3.8806	0.0021646	3.2701	0.0018241	557.8038559471718	34.86	0.70241	34.86	34.398	35.1	0					28	14	3	0	0	0	0.5675	1	1715	1715		45.972	1.5951	1	429260			16648	11270	13576	13598	18563	18563					0.03681860589426833
HSSDPTIIL	9	Unmodified	_HSSDPTIIL_					0	0	0			REV__ENSG00000164603|ENST00000297145|BMT2	REV__ENSG00000164603|ENST00000297145|BMT2	MULTI-MSMS	OvCa99_classI_Rep5	1	491.7650451660156	2	491.763832	981.513111	1.4171	0.00069687	1.0085	0.00049593	2.4255	0.0011928	491.76410684155206	92.353	0.5029	92.353	92.174	92.677	0					22	11	3	0	0	0	0.36502	1	9992	9992		55.504	0.73953	1	749880	+		16649	21000	13577	13599	18564	18564					0.021614636893104944
HSSDPTIIL	9	Unmodified	_HSSDPTIIL_					0	0	0			REV__ENSG00000164603|ENST00000297145|BMT2	REV__ENSG00000164603|ENST00000297145|BMT2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	491.763832	981.513111	0.36779	0.00018086	-0.80617	-0.00039645	-0.43839	-0.00021558	491.76352197957056	93.769	1.725	92.67	92.225	93.95	-1.0995	0.091049	-0.0012719	NaN	55.504	57	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65182	+		16650	21000	13577	13599							0.021614636893104944
HSSDPTIIL	9	Unmodified	_HSSDPTIIL_					0	0	0			REV__ENSG00000164603|ENST00000297145|BMT2	REV__ENSG00000164603|ENST00000297145|BMT2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	491.763832	981.513111	-0.92087	-0.00045285	0.99455	0.00048908	0.073682	3.6234E-05	491.76424790537493	94.528	1.0072	92.632	92.153	93.161	-1.8956	0.053484	0.00049916	NaN	55.504	36	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79399	+		16651	21000	13577	13599							0.021614636893104944
HSSDPTIIL	9	Unmodified	_HSSDPTIIL_					0	0	0			REV__ENSG00000164603|ENST00000297145|BMT2	REV__ENSG00000164603|ENST00000297145|BMT2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	491.763832	981.513111	-0.61218	-0.00030105	0.26551	0.00013057	-0.34667	-0.00017048	491.76388740478484	95.128	1.4063	92.66	92.21	93.616	-2.4685	0.080987	-0.00021786	NaN	55.504	45	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71469	+		16652	21000	13577	13599							0.021614636893104944
HSSDQQDQT	9	Unmodified	_HSSDQQDQT_					0	0	0			REV__ENST00000254868.8_2_17:6983437-6983539:-|nuORF	REV__ENST00000254868.8_2_17:6983437-6983539:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8255004882812	2	523.212692	1044.41083	1.7745	0.00092843	0.63902	0.00033435	2.4135	0.0012628	523.7150628831881	77.25	0.20993	77.25	77.126	77.336	0					6	4	2	0	0	0	0.027462	1	7786	7786		23.523	0	1	55642	+		16653	23883	13578	13600	18565	18565					-0.10959854120278578
HSSEYSDENSF	11	Unmodified	_HSSEYSDENSF_					0	0	0		ENST00000374379.8_1_1:25169437-25169536:+|nuORF	ENST00000374379.8_1_1:25169437-25169536:+|nuORF	ENST00000374379.8_1_1:25169437-25169536:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.7726745605469	3	434.502073	1300.48439	-0.39182	-0.00017025	-0.52496	-0.0002281	-0.91678	-0.00039834	434.83613725925295	42.25	0.24459	39.27	39.116	39.361	-2.9804					6	4	2	0	0	0	0.026277	1	1939	1939		5.4129	2.0042	1	14458			16654	11033	13579	13601	18566	18566					-0.15383350468459867
HSSGVQNGKM	10	Unmodified	_HSSGVQNGKM_					0	0	0		nc|ENSG00000142784|Q8N5D0-5|WDTC1;nc|ENSG00000142784|Q8N5D0-6|WDTC1;nc|ENSG00000142784|Q8N5D0-4|WDTC1	nc|ENSG00000142784|Q8N5D0-5|WDTC1	nc|ENSG00000142784|Q8N5D0-5|WDTC1	MULTI-MSMS	OvCa9_classI_Rep2	2	522.7520751953125	2	522.74819	1043.48183	3.376	0.0017648	3.5109	0.0018353	6.8869	0.0036001	522.7498693889222	26.205	1.4035	23.495	23.207	24.61	-2.7097					77	38	3	0	0	0	0.62299	1	381	381		39.253	2.0937	1	431350			16655	15071	13580	13602	18567	18567					-0.03817432616460792
HSSIPFPYF	9	Unmodified	_HSSIPFPYF_					0	0	0			REV__ENST00000513604.5_1_5:148406133-148406409:-|nuORF	REV__ENST00000513604.5_1_5:148406133-148406409:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	547.3397827148438	2	547.768917	1093.52328	0.54042	0.00029602	-3.9597	-0.002169	-3.4193	-0.001873	547.7650245730235	71.981	0.52142	69.474	69.068	69.59	-2.5072					13	9	2	0	0	0	0.027462	1	5791	5791		24.203	11.244	1	6282.6	+		16656	26977	13581	13603	18568	18568					-0.019739285854939226
HSSKVLKVI	9	Unmodified	_HSSKVLKVI_					0	0	0			REV__ENSG00000174145|ENST00000309447|NWD2	REV__ENSG00000174145|ENST00000309447|NWD2	MULTI-MSMS	OvCa9_classI_Rep3	3	505.8212585449219	2	505.821484	1009.62842	0.64646	0.00032699	-0.45165	-0.00022845	0.19481	9.8539E-05	505.82071713422636	111.21	1.5451	110.11	109.55	111.09	-1.1038					67	30	4	0	0	0	0.53483	1	8071	8071		39.253	0.44669	1	152220	+		16657	21813	13582	13604	18569	18569					0.12398612610945747
HSTDRVVLI	9	Unmodified	_HSTDRVVLI_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;HNRNPK|p.Y280Mfs*4|1|0.05|ENSG00000165119|chr9:83971997-83971997|A/-|frameshift_variant	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	OvCa9_classI_Rep2	2	520.2985229492188	2	520.298373	1038.58219	0.36923	0.00019211	-0.86723	-0.00045122	-0.49801	-0.00025911	520.2979852100459	70.209	5.1142	67.638	66.715	71.829	-2.5707					220	98	5	0	0	0	0.043101	14	5595	5595;5601;5607;5613;5619;5625;5631;5637;5644;5650;5656;5662;5671;5677		124.08	59.873	1	3616400			16658	6523	13583	13605	18570;18571;18572;18573;18574;18575;18576;18577;18578;18579;18580;18581;18582;18583	18570					0.06444547708861137
HSTDRVVLI	9	Unmodified	_HSTDRVVLI_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;HNRNPK|p.Y280Mfs*4|1|0.05|ENSG00000165119|chr9:83971997-83971997|A/-|frameshift_variant	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.2998657226562	2	520.298373	1038.58219	-1.2354	-0.00064279	0.60305	0.00031377	-0.63238	-0.00032902	520.298690124259	71.312	4.3505	67.856	67.533	71.883	-3.4563					145	89	5	0	0	0	0.043101	10	5443	5420;5431;5443;5455;5467;5480;5494;5507;5518;5531		124.08	47.306	1	4630400			16659	6523	13583	13605	18584;18585;18586;18587;18588;18589;18590;18591;18592;18593	18586					0.06444547708861137
HSTENEHL	8	Unmodified	_HSTENEHL_					0	0	0			REV__ENSG00000102699|ENST00000381989|PARP4	REV__ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	OvCa99_classI_Rep5	1	483.7170104980469	2	483.717413	965.420273	1.8816	0.00091018	-2.4557	-0.0011879	-0.57409	-0.0002777	483.716106815505	77.609	0.75263	77.609	77.381	78.134	0					31	17	2	0	0	0	0.64026	1	7843	7843		55.504	0	1	901990	+		16660	17567	13584	13606	18594	18594					-0.06382041044093967
HSTEYNLDS	9	Unmodified	_HSTEYNLDS_					0	0	0		nc|ENSG00000119844|Q6ULP2-7|AFTPH;ENST00000498706.5_1_2:64778608-64806757:+|nuORF;nc|ENSG00000119844|Q6ULP2-8|AFTPH;nc|ENSG00000119844|Q6ULP2-6|AFTPH;ENSG00000119844|ENST00000409933|AFTPH;nc|ENSG00000119844|Q6ULP2-9|AFTPH	nc|ENSG00000119844|Q6ULP2-7|AFTPH	nc|ENSG00000119844|Q6ULP2-7|AFTPH	MULTI-SECPEP	OvCa9_classI_Rep3	3	533.33984375	2	533.22781	1064.44107	-5.4045	-0.0028818	2.0269	0.0010808	-3.3776	-0.001801	533.2280616051877	156.18	0.32556	155.11	155.01	155.34	-1.073					11	7	2	0	0	0	0.027462	1	13448	13448		14.865	0	1	6909.3			16661	3398	13585	13607	18595	18595					-0.08857495455094977
HSTKIYRWRLY	11	Unmodified	_HSTKIYRWRLY_					0	0	0		ENST00000294728.6_1_1:101200157-101200265:+|nuORF	ENST00000294728.6_1_1:101200157-101200265:+|nuORF	ENST00000294728.6_1_1:101200157-101200265:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.763427734375	3	508.280765	1521.82047	-2.9423	-0.0014955	3.6223	0.0018411	0.67998	0.00034562	508.2826024214894	36.52	0.4931	33.81	33.597	34.09	-2.7097					14	9	3	0	0	0	0.026321	1	1566	1566		14.694	5.8944	1	19934			16662	10117	13586	13608	18596	18596					0.0804290829112233
HSTPPTSAL	9	Unmodified	_HSTPPTSAL_					0	0	0		nc|ENSG00000174502|Q7LBE3-2|SLC26A9	nc|ENSG00000174502|Q7LBE3-2|SLC26A9	nc|ENSG00000174502|Q7LBE3-2|SLC26A9	MULTI-SECPEP	OvCa99_classI_Rep5	1	455.2441101074219	2	455.735074	909.455596	0.40306	0.00018369	-2.2008	-0.001003	-1.7977	-0.0008193	455.7367468697888	57.816	0.7151	57.816	57.522	58.237	0					33	16	3	0	0	0	0.027402	1	4904	4904		66.429	22.312	1	249290			16663	15185	13587	13609	18597	18597					-0.0027537851628949284
HSTRPPLTP	9	Unmodified	_HSTRPPLTP_					0	0	0			REV__ENSG00000102786|ENST00000311234|INTS6	REV__ENSG00000102786|ENST00000311234|INTS6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.76171875	2	503.277441	1004.54033	-1.5006	-0.00075523	1.2003	0.00060408	-0.30032	-0.00015115	503.2779798193976	50.767	1.873	47.594	47.256	49.129	-3.1734					57	36	2	0	0	0	0.027441	1	2932	2932		49.442	3.4896	1	405020	+		16664	17571	13588	13610	18598	18598					0.03823992020318201
HSVDAHTAE	9	Unmodified	_HSVDAHTAE_					0	0	0		nc|ENSG00000162521|Q09028-4|RBBP4;KIAA1522-RBBP4|1|fusion;nc|ENSG00000162521|Q09028-3|RBBP4;nc|ENSG00000162521|Q09028-2|RBBP4;ENSG00000162521|ENST00000373493|RBBP4	nc|ENSG00000162521|Q09028-4|RBBP4	nc|ENSG00000162521|Q09028-4|RBBP4	MULTI-MSMS	OvCa99_classI_Rep5	1	483.71710205078125	2	483.717413	965.420273	-0.4346	-0.00021023	-1.9078	-0.00092284	-2.3424	-0.0011331	483.7163033006289	61.763	0.7929	61.763	61.542	62.335	0					36	18	3	0	0	0	0.33652	1	5467	5467		58.782	3.2778	1	1576800			16665	6191	13589	13611	18599	18599					-0.06382041044093967
HSVHGKQLQ	9	Unmodified	_HSVHGKQLQ_					0	0	0			REV__nc|ENSG00000110693|P35712-3|SOX6	REV__nc|ENSG00000110693|P35712-3|SOX6	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.3125610351562	2	517.280515	1032.54648	0.027894	1.4429E-05	1.2775	0.00066082	1.3054	0.00067525	517.2825993081038	67.324	1.3948	67.324	66.288	67.683	0					56	34	3	0	0	0	0.027462	1	6172	6172		47.916	9.1095	1	563620	+		16666	17995	13590	13612	18600	18600					0.03150510251862215
HSVREVRVVR	10	Unmodified	_HSVREVRVVR_					0	0	0			REV__ENSG00000178685|ENST00000313028|PARP10	REV__ENSG00000178685|ENST00000313028|PARP10	MULTI-MSMS	OvCa99_classI_Rep5	1	412.91552734375	3	412.914305	1235.72109	0.59113	0.00024409	2.7761	0.0011463	3.3672	0.0013904	412.9153562467149	47.646	1.0356	47.646	47.336	48.372	0					59	23	4	0	0	0	0.69928	1	3457	3457		30.569	2.4874	1	2131900	+		16667	22069	13591	13613	18601	18601					0.1126551039703827
HSWIRHLRGN	10	Unmodified	_HSWIRHLRGN_					0	0	0			REV__ENST00000314761.8_1_2:190323529-190324073:+|nuORF	REV__ENST00000314761.8_1_2:190323529-190324073:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	638.2581787109375	2	638.344512	1274.67447	2.0573	0.0013133	3.3501	0.0021385	5.4074	0.0034518	638.3468067221077	135.87	0.47185	135.87	135.73	136.21	0					10	9	2	0	0	0	0.027028	1	15842	15842		31.53	14.062	1	103660	+		16668	24386	13592	13614	18602	18602					0.04812070565731119
HSWMWQPQSQ	10	Unmodified	_HSWMWQPQSQ_					0	0	0		ENST00000571689.1_1_17:5138078-5138517:+|nuORF	ENST00000571689.1_1_17:5138078-5138517:+|nuORF	ENST00000571689.1_1_17:5138078-5138517:+|nuORF	MSMS	OvCa99_classI_Rep5	1	438.8631286621094	3	438.86099	1313.56114	NaN	NaN	NaN	NaN	NaN	NaN	NaN	152.12	1	152.12	151.62	152.62	0								0	0	0	0.14572	1	17816	17816		16.717	0.71061	1				16669	13905	13593	13615	18603	18603					-0.08309785662322611
HSYRVYTLKER	11	Unmodified	_HSYRVYTLKER_					0	0	0		nc|ENSG00000134086|P40337-2|VHL	nc|ENSG00000134086|P40337-2|VHL	nc|ENSG00000134086|P40337-2|VHL	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.2174072265625	3	484.596642	1450.7681	0.0023928	1.1595E-06	-3.0889	-0.0014969	-3.0865	-0.0014957	484.59504969258967	31.025	0.24102	31.025	30.93	31.171	0					6	4	2	0	0	0	0.02625	1	1238	1238		13.508	2.9211	1	25031			16670	15025	13594	13616	18604	18604					0.06074325157487692
HSYSIYISV	9	Unmodified	_HSYSIYISV_					0	0	0			REV__nc|ENSG00000204278|A6NFC5-3|TMEM235	REV__nc|ENSG00000204278|A6NFC5-3|TMEM235	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.3114013671875	2	534.771657	1067.52876	0.99496	0.00053207	3.5878	0.0019187	4.5828	0.0024507	534.7736563672248	115.06	0.37251	115.06	114.84	115.21	0					10	7	2	0	0	0	0.027462	1	13128	13128		16.473	0	1	32390	+		16671	23137	13595	13617	18605	18605					-0.0023024979368528875
HTAAISISRA	10	Unmodified	_HTAAISISRA_					0	0	0		ENSG00000154447|ENST00000284637|SH3RF1	ENSG00000154447|ENST00000284637|SH3RF1	ENSG00000154447|ENST00000284637|SH3RF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.291015625	2	513.788173	1025.56179	-0.65034	-0.00033414	-0.2304	-0.00011838	-0.88074	-0.00045251	513.7879602762737	40.224	0.86573	40.224	40.016	40.881	0					44	18	3	0	0	0	0.026849	1	2414	2414		32.812	7.3622	1	2861000			16672	5737	13596	13618	18606	18606					0.05003377049024493
HTAAVKLLL	9	Unmodified	_HTAAVKLLL_					0	0	0		ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17	ENST00000514252.1_1_4:73978989-74017230:-|nuORF	ENST00000514252.1_1_4:73978989-74017230:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	483.31243896484375	2	483.310752	964.606951	2.1385	0.0010336	-0.1546	-7.4717E-05	1.9839	0.00095885	483.31054889231905	78.477	1.2179	78.477	78.134	79.352	0					77	29	4	0	0	0	0.1804	2	7972	7944;7972		79.713	19.676	1	7666000			16673	4139	13597	13619	18607;18608	18608					0.1232322758223745
HTACAETLTLV	11	Unmodified	_HTACAETLTLV_					0	0	0			REV__nc|ENSG00000153237|Q8NFR7-2|CCDC148	REV__nc|ENSG00000153237|Q8NFR7-2|CCDC148	MULTI-MSMS	OvCa9_classI_Rep3	3	579.7913208007812	2	579.794806	1157.57506	-4.3077	-0.0024976	1.0169	0.00058959	-3.2908	-0.001908	579.7951709807556	145.58	0.99438	144.6	144.34	145.33	-0.97301					55	19	4	0	0	0	0.70865	1	12207	12207		26.693	0	1	106300	+		16674	20331	13598	13620	18609	18609					0.002574470461013334
HTALESYIKN	10	Unmodified	_HTALESYIKN_					0	0	0		tr|A0A553SP06|A0A553SP06_NIACITyrosinerecombinaseXerCOS=NialliacirculansOX=1397GN=xerCPE=3SV=1	tr|A0A553SP06|A0A553SP06_NIACITyrosinerecombinaseXerCOS=NialliacirculansOX=1397GN=xerCPE=3SV=1	tr|A0A553SP06|A0A553SP06_NIACITyrosinerecombinaseXerCOS=NialliacirculansOX=1397GN=xerCPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.7703857421875	2	588.306395	1174.59824	1.7526	0.001031	0.87186	0.00051292	2.6244	0.001544	588.3072692724515	128.07	0.88878	128.07	127.81	128.7	0					28	18	2	0	0	0	0.026891	1	14843	14843		39.253	0	1	73751			16675	33989	13599	13621	18610	18610					0.01792209155087221
HTAPPNED	8	Unmodified	_HTAPPNED_					0	0	0			REV__ENST00000473109.2_1_11:47212827-47212866:-|nuORF	REV__ENST00000473109.2_1_11:47212827-47212866:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	439.7532043457031	2	440.693407	879.37226	0.60564	0.0002669	-1.1609	-0.00051158	-0.55521	-0.00024468	440.6928589115238	103.94	0.68015	102.51	102.18	102.86	-1.4347					18	12	2	0	0	0	0.028476	1	7250	7250		35.618	5.1146	1	10254	+		16676	26325	13600	13622	18611	18611					-0.07225114964148815
HTAVHFHSN	9	Unmodified	_HTAVHFHSN_					0	0	0			REV__ENSG00000113209|ENST00000231134|PCDHB5	REV__ENSG00000113209|ENST00000231134|PCDHB5	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2882080078125	2	525.249215	1048.48388	-1.1037	-0.00057974	-3.0606	-0.0016076	-4.1643	-0.0021873	525.2472747776462	50.174	0.60944	50.174	49.899	50.509	0					21	13	2	0	0	0	0.027462	1	3774	3774		19.104	0	1	136640	+		16677	18138	13601	13623	18612	18612					-0.038426358163405894
HTDMVNTGTM	10	Unmodified	_HTDMVNTGTM_					0	0	0			REV__nc|ENSG00000168237|Q8IVS8-6|GLYCTK	REV__nc|ENSG00000168237|Q8IVS8-6|GLYCTK	MULTI-MSMS	OvCa99_classI_Rep5	1	553.7335815429688	2	553.733891	1105.45323	-0.84436	-0.00046755	1.0292	0.00056989	0.18482	0.00010234	553.7341850276496	34.888	0.65881	34.888	34.725	35.384	0					30	13	4	0	0	0	0.6349	1	1718	1718		37.812	7.3079	1	362330	+		16678	21356	13602	13624	18613	18613					-0.09527918307890104
HTEEEPPPFG	10	Unmodified	_HTEEEPPPFG_					0	0	0			REV__ENST00000603309.1_1_10:75559909-75560534:+|nuORF	REV__ENST00000603309.1_1_10:75559909-75560534:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.7804565429688	2	570.253828	1138.4931	0.031927	1.8206E-05	4.327	0.0024675	4.3589	0.0024857	570.7597594138707	31.297	0.48687	31.297	31.171	31.658	0					10	9	2	0	0	0	0.026982	1	1318	1318		23.042	5.6775	1	16118	+		16679	23293	13603	13625	18614	18614					-0.07060332041328365
HTEEPQAK	8	Unmodified	_HTEEPQAK_					0	0	0		ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2;nc|ENSG00000006744|Q9BQ52-3|ELAC2;ENST00000484122.5_1_17:12896137-12899859:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12896137-12899859:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.7427978515625	2	470.230156	938.445759	2.672	0.0012565	-3.0217	-0.0014209	-0.34963	-0.00016441	470.2285881676154	75.592	1.0351	75.592	75.33	76.365	0					47	25	2	0	0	0	0.028476	1	7561	7561		27.882	17.017	1	1384200			16680	891;12593	13604	13626	18615	18615					-0.025925665216618654
HTEGRSEPILL	11	Unmodified	_HTEGRSEPILL_					0	0	0		FOXO4|p.R192Pfs*9|1|0.11|ENSG00000184481|chrX:71100798-71100799|-/C|frameshift_variant;ENSG00000184481|ENST00000374259|FOXO4	FOXO4|p.R192Pfs*9|1|0.11|ENSG00000184481|chrX:71100798-71100799|-/C|frameshift_variant	FOXO4|p.R192Pfs*9|1|0.11|ENSG00000184481|chrX:71100798-71100799|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	626.3379516601562	2	626.338227	1250.6619	-0.57444	-0.0003598	0.55425	0.00034715	-0.020199	-1.2652E-05	626.3384917976218	124.05	1.1637	122.66	122.27	123.44	-1.3908					61	22	4	0	0	0	0.31264	1	11748	11748		67.494	11.06	1	304030			16681	8163	13605	13627	18616	18616					0.04659569592195112
HTERSTKQGAP	11	Unmodified	_HTERSTKQGAP_					0	0	0			REV__chr5:69625900-70219918|168|12.84|0.0|20.29|-|0|TE_info:HAL1,HAL1_dup7374,L1,LINE,acceptor,-,69625677,69625900|None,GUSBP14|1	REV__chr5:69625900-70219918|168|12.84|0.0|20.29|-|0|TE_info:HAL1,HAL1_dup7374,L1,LINE,acceptor,-,69625677,69625900|None,GUSBP14|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	606.7828369140625	2	606.31	1210.60545	0.77371	0.00046911	-0.72673	-0.00044062	0.046978	2.8483E-05	606.3080505081446	160.72	1.0018	160.72	160.21	161.21	0					35	19	3	0	0	0	0.026007	1	18813	18813		8.2351	0	1	70491	+		16682	16066	13606	13628	18617	18617					0.008569417555463588
HTGDKPYK	8	Unmodified	_HTGDKPYK_					0	0	0		ENSG00000227124|ENST00000652011|ZNF717;KLF12|p.E344D|1|0.1|ENSG00000118922|chr13:73695667-73695667|C/A|missense_variant;nc|ENSG00000196967|Q6P3V2-2|ZNF585A;nc|ENSG00000161551|Q9BSK1-2|ZNF577;ENSG00000161551|ENST00000638348|ZNF577;ENSG00000197779|ENST00000338637|ZNF81;ENSG00000197497|ENST00000396424|ZNF665;ENST00000588883.5_1_19:44679604-44681824:+|nuORF;ENSG00000096654|ENST00000683788|ZNF184;ENSG00000245680|ENST00000532828|ZNF585B;ENSG00000196967|ENST00000292841|ZNF585A;ENSG00000167380|ENST00000337433|ZNF226;ENSG00000196081|ENST00000418100|ZNF724;nc|ENSG00000168122|Q9NSJ1|ZNF355P;ENSG00000278129|ENST00000621650|ZNF8;nc|ENSG00000182903|Q8TF20|ZNF721;ENSG00000182903|ENST00000511833|ZNF721;nc|ENSG00000196268|Q6ZR52|ZNF493;ENSG00000196268|ENST00000392288|ZNF493;ENST00000396403.8_1_19:53995875-53996058:+|nuORF;nc|ENSG00000197608|Q6ZN19-2|ZNF841;nc|ENSG00000197608|Q6ZN19|ZNF841;ENSG00000197608|ENST00000594440|ZNF841;ENSG00000196267|ENST00000682614|ZNF836;ENSG00000198346|ENST00000396403|ZNF813	ENSG00000227124|ENST00000652011|ZNF717;ENSG00000196081|ENST00000418100|ZNF724;nc|ENSG00000168122|Q9NSJ1|ZNF355P;ENSG00000278129|ENST00000621650|ZNF8;nc|ENSG00000182903|Q8TF20|ZNF721;nc|ENSG00000196268|Q6ZR52|ZNF493;ENST00000396403.8_1_19:53995875-53996058:+|nuORF;nc|ENSG00000197608|Q6ZN19-2|ZNF841;ENSG00000196267|ENST00000682614|ZNF836;ENSG00000198346|ENST00000396403|ZNF813	ENSG00000196081|ENST00000418100|ZNF724	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.2445373535156	2	473.243067	944.47158	-0.24925	-0.00011796	0.41719	0.00019743	0.16794	7.9475E-05	473.2430688770203	54.03	2.1453	50.783	50.314	52.459	-3.2474					111	41	4	0	0	0	0.57878	1	3338	3338		68.485	0	1	1113400			16683	8560;9589;8038;9277;15165;8584;11315;8728;8583;8808	13607	13629	18618	18618					-0.0028767227937578355
HTGKPLEV	8	Unmodified	_HTGKPLEV_					0	0	0		nc|ENSG00000203710|P17927|CR1;ENSG00000203710|ENST00000367049|CR1;ENST00000436595.1_1_1:207669690-207743292:+|nuORF;ENST00000434033.5_1_1:207669690-207707642:+|nuORF;ENST00000367050.8_1_1:207669597-207732429:+|nuORF	nc|ENSG00000203710|P17927|CR1	nc|ENSG00000203710|P17927|CR1	MSMS	OvCa9_classI_Rep2	2	440.74725341796875	2	440.747985	879.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.535	1	40.826	40.326	41.326	-2.7097								0	0	0	0.30129	1	2419	2419		74.255	13.283	1				16684	8925	13608	13630	18619	18619					0.03685515725987898
HTGKPLEV	8	Unmodified	_HTGKPLEV_					0	0	0		nc|ENSG00000203710|P17927|CR1;ENSG00000203710|ENST00000367049|CR1;ENST00000436595.1_1_1:207669690-207743292:+|nuORF;ENST00000434033.5_1_1:207669690-207707642:+|nuORF;ENST00000367050.8_1_1:207669597-207732429:+|nuORF	nc|ENSG00000203710|P17927|CR1	nc|ENSG00000203710|P17927|CR1	MSMS	OvCa9_classI_Rep2	2	440.7477111816406	2	440.747985	879.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.564	1	40.854	40.354	41.354	-2.7097								0	0	0	0.30129	1	2422	2422		40.778	1.972	1				16685	8925	13608	13630	18620	18620					0.03685515725987898
HTGKPLEV	8	Unmodified	_HTGKPLEV_					0	0	0		nc|ENSG00000203710|P17927|CR1;ENSG00000203710|ENST00000367049|CR1;ENST00000436595.1_1_1:207669690-207743292:+|nuORF;ENST00000434033.5_1_1:207669690-207707642:+|nuORF;ENST00000367050.8_1_1:207669597-207732429:+|nuORF	nc|ENSG00000203710|P17927|CR1	nc|ENSG00000203710|P17927|CR1	MSMS	OvCa9_classI_Rep2	2	440.7479553222656	2	440.747985	879.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.613	1	40.904	40.404	41.404	-2.7097								0	0	0	0.30129	1	2428	2428		68.787	0	1				16686	8925	13608	13630	18621	18621					0.03685515725987898
HTGKPLEV	8	Unmodified	_HTGKPLEV_					0	0	0		nc|ENSG00000203710|P17927|CR1;ENSG00000203710|ENST00000367049|CR1;ENST00000436595.1_1_1:207669690-207743292:+|nuORF;ENST00000434033.5_1_1:207669690-207707642:+|nuORF;ENST00000367050.8_1_1:207669597-207732429:+|nuORF	nc|ENSG00000203710|P17927|CR1	nc|ENSG00000203710|P17927|CR1	MSMS	OvCa9_classI_Rep2	2	440.748046875	2	440.747985	879.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.662	1	40.953	40.453	41.453	-2.7097								0	0	0	0.30129	1	2434	2434		84.916	5.4645	1				16687	8925	13608	13630	18622	18622					0.03685515725987898
HTGKPLEV	8	Unmodified	_HTGKPLEV_					0	0	0		nc|ENSG00000203710|P17927|CR1;ENSG00000203710|ENST00000367049|CR1;ENST00000436595.1_1_1:207669690-207743292:+|nuORF;ENST00000434033.5_1_1:207669690-207707642:+|nuORF;ENST00000367050.8_1_1:207669597-207732429:+|nuORF	nc|ENSG00000203710|P17927|CR1	nc|ENSG00000203710|P17927|CR1	MSMS	OvCa9_classI_Rep2	2	440.7485046386719	2	440.747985	879.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.711	1	41.002	40.502	41.502	-2.7097								0	0	0	0.30129	1	2440	2440		58.782	0	1				16688	8925	13608	13630	18623	18623					0.03685515725987898
HTGKPLEV	8	Unmodified	_HTGKPLEV_					0	0	0		nc|ENSG00000203710|P17927|CR1;ENSG00000203710|ENST00000367049|CR1;ENST00000436595.1_1_1:207669690-207743292:+|nuORF;ENST00000434033.5_1_1:207669690-207707642:+|nuORF;ENST00000367050.8_1_1:207669597-207732429:+|nuORF	nc|ENSG00000203710|P17927|CR1	nc|ENSG00000203710|P17927|CR1	MSMS	OvCa9_classI_Rep2	2	440.747802734375	2	440.747985	879.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.761	1	41.051	40.551	41.551	-2.7097								0	0	0	0.30129	1	2446	2446		54.776	12.38	1				16689	8925	13608	13630	18624	18624					0.03685515725987898
HTGKPLEV	8	Unmodified	_HTGKPLEV_					0	0	0		nc|ENSG00000203710|P17927|CR1;ENSG00000203710|ENST00000367049|CR1;ENST00000436595.1_1_1:207669690-207743292:+|nuORF;ENST00000434033.5_1_1:207669690-207707642:+|nuORF;ENST00000367050.8_1_1:207669597-207732429:+|nuORF	nc|ENSG00000203710|P17927|CR1	nc|ENSG00000203710|P17927|CR1	MSMS	OvCa9_classI_Rep2	2	440.74798583984375	2	440.747985	879.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.818	1	41.108	40.608	41.608	-2.7097								0	0	0	0.30129	1	2453	2453		68.787	0	1				16690	8925	13608	13630	18625	18625					0.03685515725987898
HTGKPLEV	8	Unmodified	_HTGKPLEV_					0	0	0		nc|ENSG00000203710|P17927|CR1;ENSG00000203710|ENST00000367049|CR1;ENST00000436595.1_1_1:207669690-207743292:+|nuORF;ENST00000434033.5_1_1:207669690-207707642:+|nuORF;ENST00000367050.8_1_1:207669597-207732429:+|nuORF	nc|ENSG00000203710|P17927|CR1	nc|ENSG00000203710|P17927|CR1	MSMS	OvCa9_classI_Rep2	2	440.74761962890625	2	440.747985	879.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.875	1	41.165	40.665	41.665	-2.7097								0	0	0	0.30129	1	2460	2460		74.255	13.283	1				16691	8925	13608	13630	18626	18626					0.03685515725987898
HTGKPLEV	8	Unmodified	_HTGKPLEV_					0	0	0		nc|ENSG00000203710|P17927|CR1;ENSG00000203710|ENST00000367049|CR1;ENST00000436595.1_1_1:207669690-207743292:+|nuORF;ENST00000434033.5_1_1:207669690-207707642:+|nuORF;ENST00000367050.8_1_1:207669597-207732429:+|nuORF	nc|ENSG00000203710|P17927|CR1	nc|ENSG00000203710|P17927|CR1	MSMS	OvCa9_classI_Rep2	2	440.7479553222656	2	440.747985	879.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	43.931	1	41.222	40.722	41.722	-2.7097								0	0	0	0.30129	1	2467	2467		40.778	3.7497	1				16692	8925	13608	13630	18627	18627					0.03685515725987898
HTGKPLEV	8	Unmodified	_HTGKPLEV_					0	0	0		nc|ENSG00000203710|P17927|CR1;ENSG00000203710|ENST00000367049|CR1;ENST00000436595.1_1_1:207669690-207743292:+|nuORF;ENST00000434033.5_1_1:207669690-207707642:+|nuORF;ENST00000367050.8_1_1:207669597-207732429:+|nuORF	nc|ENSG00000203710|P17927|CR1	nc|ENSG00000203710|P17927|CR1	MULTI-MSMS	OvCa9_classI_Rep4_	4	440.7491760253906	2	440.747985	879.481417	-1.2263	-0.00054049	1.1049	0.00048698	-0.1214	-5.3509E-05	440.74849191919327	43.824	5.5358	40.817	40.378	45.914	-3.0074					193	107	3	0	0	0	0.35821	8	2138	2117;2126;2138;2151;2163;2176;2188;2200		96.19	13.885	1	3448700			16693	8925	13608	13630	18628;18629;18630;18631;18632;18633;18634;18635	18630					0.03685515725987898
HTGLKRRVVE	10	Unmodified	_HTGLKRRVVE_					0	0	0			REV__ENST00000390401.2_1_3:119187859-119190300:+|nuORF	REV__ENST00000390401.2_1_3:119187859-119190300:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	597.856201171875	2	597.856921	1193.69929	-2.4902	-0.0014888	1.4044	0.0008396	-1.0859	-0.00064919	597.8575960796461	144.35	4.0594	144.12	142.06	146.12	-0.22696					210	81	4	0	0	0	0.79917	1	14502	14502		19.104	2.6304	1	136500	+		16694	20832	13609	13631	18636	18636					0.11018705648439209
HTGPARVL	8	Unmodified	_HTGPARVL_					0	0	0		ENST00000570164.5_1_16:31501628-31501862:-|nuORF	ENST00000570164.5_1_16:31501628-31501862:-|nuORF	ENST00000570164.5_1_16:31501628-31501862:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	425.7493896484375	2	425.748319	849.482085	-0.87383	-0.00037203	0.64563	0.00027488	-0.2282	-9.7155E-05	425.748554619023	44.53	1.7012	41.491	41.156	42.858	-3.0385					76	32	4	0	0	0	0.7224	1	2213	2213		38.806	6.8513	1	553650			16695	13890	13610	13632	18637	18637					0.05132355165721947
HTGPARVL	8	Unmodified	_HTGPARVL_					0	0	0		ENST00000570164.5_1_16:31501628-31501862:-|nuORF	ENST00000570164.5_1_16:31501628-31501862:-|nuORF	ENST00000570164.5_1_16:31501628-31501862:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	425.748319	849.482085	0.13106	5.5799E-05	0.17964	7.648E-05	0.3107	0.00013228	425.74821704039584	44.34	1.2442	41.63	41.303	42.547	-2.7097	0.069545	-0.00021347	NaN	38.806	51	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144590			16696	13890	13610	13632							0.05132355165721947
HTGPVRAL	8	Unmodified	_HTGPVRAL_					0	0	0		nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-5|SEC31A;SEC31A|p.I462Lfs*16|1|0.44|ENSG00000138674|chr4:82864412-82864412|T/-|frameshift_variant;ENST00000506497.5_1_4:83799153-83812260:-|nuORF	nc|ENSG00000138674|O94979-8|SEC31A	nc|ENSG00000138674|O94979-8|SEC31A	MULTI-MSMS	OvCa99_classI_Rep5	1	425.74822998046875	2	425.748319	849.482085	-0.23999	-0.00010217	-0.57615	-0.00024529	-0.81613	-0.00034747	425.7482973863732	38.599	4.242	38.599	38.254	42.496	0					173	95	5	0	0	0	0.57878	5	2304	2185;2206;2230;2255;2304		68.485	15.133	1	51988000			16697	4710	13611	13633	18638;18639;18640;18641;18642	18642					0.051323551656992095
HTGPVRAL	8	Unmodified	_HTGPVRAL_					0	0	0		nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-5|SEC31A;SEC31A|p.I462Lfs*16|1|0.44|ENSG00000138674|chr4:82864412-82864412|T/-|frameshift_variant;ENST00000506497.5_1_4:83799153-83812260:-|nuORF	nc|ENSG00000138674|O94979-8|SEC31A	nc|ENSG00000138674|O94979-8|SEC31A	MULTI-MSMS	OvCa9_classI_Rep4_	4	425.7489318847656	2	425.748319	849.482085	-0.87383	-0.00037203	0.64563	0.00027488	-0.2282	-9.7155E-05	425.748554619023	44.53	1.7012	41.491	41.156	42.858	-3.0385					76	32	4	0	0	0	0.73626	1	2225	2225		33.516	1.5607	1	553650			16698	4710	13611	13633	18643	18643					0.051323551656992095
HTGSQLCPE	9	Unmodified	_HTGSQLCPE_					0	0	0		ENST00000545201.6_1_19:7599214-7599667:+|nuORF;ENST00000601870.1_3_19:7598512-7599667:+|nuORF	ENST00000545201.6_1_19:7599214-7599667:+|nuORF	ENST00000545201.6_1_19:7599214-7599667:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.7645568847656	2	486.216192	970.41783	-0.64565	-0.00031393	1.4561	0.00070799	0.81046	0.00039406	486.2168303935192	43.414	0.33807	43.414	43.27	43.608	0					11	7	2	0	0	0	0.027462	1	2845	2845		24.519	0	1	147740			16699	13518	13612	13634	18644	18644					-0.06856212773402603
HTHAEELYYLN	11	Unmodified	_HTHAEELYYLN_					0	0	0		nc|ENSG00000168077|Q6AZY7-2|SCARA3;ENSG00000168077|ENST00000301904|SCARA3	nc|ENSG00000168077|Q6AZY7-2|SCARA3	nc|ENSG00000168077|Q6AZY7-2|SCARA3	MULTI-SECPEP	OvCa9_classI_Rep3	3	464.2856750488281	3	463.88597	1388.63608	-0.65225	-0.00030257	3.8541	0.0017878	3.2018	0.0014853	463.8873812165297	95.168	0.60102	93.272	92.964	93.565	-1.8956					16	11	2	0	0	0	0.026033	1	6220	6220		28.577	6.0151	1	15190			16700	6872	13613	13635	18645	18645					-0.042693246500903115
HTHAEELYYLN	11	Unmodified	_HTHAEELYYLN_					0	0	0		nc|ENSG00000168077|Q6AZY7-2|SCARA3;ENSG00000168077|ENST00000301904|SCARA3	nc|ENSG00000168077|Q6AZY7-2|SCARA3	nc|ENSG00000168077|Q6AZY7-2|SCARA3	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	463.88597	1388.63608	-1.6983	-0.00078783	6.2161	0.0028836	4.5178	0.0020958	463.8882255462625	95.547	0.45172	93.079	92.912	93.363	-2.4685	-0.096764	0.002	NaN	28.577	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17550			16701	6872	13613	13635							-0.042693246500903115
HTHLFLNLL	9	Unmodified	_HTHLFLNLL_					0	0	0		ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.320556640625	2	554.319109	1106.62366	0.34766	0.00019271	-1.9922	-0.0011043	-1.6446	-0.00091161	554.3179000227359	122.15	1.1552	120.78	120.55	121.7	-1.3666					37	22	2	0	0	0	0.16524	1	11523	11523		82.305	16.502	1	124880			16702	4193	13614	13636	18646	18646					0.07461728468183537
HTHLLLRPF	9	Unmodified	_HTHLLLRPF_					0	0	0			REV__ENSG00000134398|ENST00000256797|ERN2	REV__ENSG00000134398|ENST00000256797|ERN2	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3301391601562	2	567.33255	1132.65055	-2.3399	-0.0013275	-2.5474	-0.0014452	-4.8872	-0.0027727	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.67509	1	14565	14565		23.042	1.0826	1	241060	+		16703	19201	13615	13637	18647	18647					0.08952837079368692
HTHLLLRPF	9	Unmodified	_HTHLLLRPF_					0	0	0			REV__ENSG00000134398|ENST00000256797|ERN2	REV__ENSG00000134398|ENST00000256797|ERN2	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3289184570312	2	567.33255	1132.65055	-3.474	-0.0019709	-1.3971	-0.00079263	-4.8711	-0.0027636	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.62352	1	12336	12336		29.15	2.4566	1	458690	+		16704	19201	13615	13637	18648	18648					0.08952837079368692
HTHLLLRPF	9	Unmodified	_HTHLLLRPF_					0	0	0			REV__ENSG00000134398|ENST00000256797|ERN2	REV__ENSG00000134398|ENST00000256797|ERN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3292236328125	2	567.33255	1132.65055	-0.48412	-0.00027465	-4.2812	-0.0024289	-4.7653	-0.0027035	567.3299446868054	145.54	4.8872	144.11	142.68	147.57	-1.4357					247	95	4	0	0	0	0.59983	1	14463	14463		31.955	2.7848	1	208760	+		16705	19201	13615	13637	18649	18649					0.08952837079368692
HTHTIDSG	8	Unmodified	_HTHTIDSG_					0	0	0		tr|A0A7D6ZV64|A0A7D6ZV64_9CLOTPhosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_02615PE=4SV=1	tr|A0A7D6ZV64|A0A7D6ZV64_9CLOTPhosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_02615PE=4SV=1	tr|A0A7D6ZV64|A0A7D6ZV64_9CLOTPhosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_02615PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	434.20391845703125	2	434.201399	866.388245	1.2394	0.00053816	3.0579	0.0013277	4.2973	0.0018659	434.2025952345841	127.91	1.6798	127.68	127.34	129.02	-0.22697					69	33	3	0	0	0	0.74971	1	12515	12515		26.796	1.3459	1	238510			16706	35792	13616	13638	18650	18650					-0.050294087272277466
HTIEKGIYD	9	Unmodified	_HTIEKGIYD_					0	0	0		tr|A0A553SJZ1|A0A553SJZ1_NIACISporulationproteinOS=NialliacirculansOX=1397GN=CEQ21_17780PE=4SV=1	tr|A0A553SJZ1|A0A553SJZ1_NIACISporulationproteinOS=NialliacirculansOX=1397GN=CEQ21_17780PE=4SV=1	tr|A0A553SJZ1|A0A553SJZ1_NIACISporulationproteinOS=NialliacirculansOX=1397GN=CEQ21_17780PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.7890625	2	538.274564	1074.53457	0.18865	0.00010155	1.2905	0.00069465	1.4792	0.00079619	538.2753611980582	57.542	0.21304	57.542	57.396	57.609	0					11	4	3	0	0	0	0.027462	1	4829	4829		37.159	8.0096	1	443100			16707	33556	13617	13639	18651	18651					0.0002884871801143163
HTIILITHD	9	Unmodified	_HTIILITHD_					0	0	0		tr|A0A553SG61|A0A553SG61_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10285PE=3SV=1	tr|A0A553SG61|A0A553SG61_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10285PE=3SV=1	tr|A0A553SG61|A0A553SG61_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10285PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.2932739257812	2	531.800749	1061.58694	1.5516	0.00082514	-0.54632	-0.00029053	1.0053	0.00053461	531.8006876008861	103.1	0.49548	103.1	102.85	103.34	0					14	11	2	0	0	0	0.027462	1	11479	11479		23.042	0	1	345380			16708	33123	13618	13640	18652	18652					0.058614318515992636
HTIKFERGP	9	Unmodified	_HTIKFERGP_					0	0	0			REV__nc|ENSG00000149089|Q96GX9-3|APIP	REV__nc|ENSG00000149089|Q96GX9-3|APIP	MULTI-MSMS	OvCa9_classI_Rep2	2	542.7965087890625	2	542.79854	1083.58253	-2.2011	-0.0011947	-0.1673	-9.0808E-05	-2.3684	-0.0012856	542.7983627511975	142.92	1.1361	142.69	142.21	143.35	-0.22697					52	22	3	0	0	0	0.68424	1	14350	14350		21.96	1.013	1	87156	+		16709	20141	13619	13641	18653	18653					0.04407967428710435
HTIKLLTVI	9	Unmodified	_HTIKLLTVI_					0	0	0		ENSG00000169306|ENST00000378993|IL1RAPL1	ENSG00000169306|ENST00000378993|IL1RAPL1	ENSG00000169306|ENST00000378993|IL1RAPL1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.806396484375	2	519.33951	1036.66447	0.024163	1.2549E-05	-2.8911	-0.0015015	-2.867	-0.0014889	519.3378334743155	40.087	0.49773	37.377	37.202	37.7	-2.7097					15	9	2	0	0	0	0.027462	1	2035	2035		16.473	0	1	22646			16710	7000	13620	13642	18654	18654					0.14760069787803332
HTILPGSKT	9	Unmodified	_HTILPGSKT_					0	0	0		ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11;ANKRD11|p.R1597Lfs*44|1|0.12|ENSG00000167522|chr16:89281752-89281753|-/A|frameshift_variant;ANKRD11|p.H1613Tfs*39|1|0.32|ENSG00000167522|chr16:89281705-89281706|-/GGCACGGGCGTGGAGTGCTGCGAGTCGGCGCAGT|frameshift_variant	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.28564453125	2	477.274367	952.53418	0.50069	0.00023897	-0.886	-0.00042287	-0.38531	-0.0001839	477.27369822984167	59.451	1.1311	56.059	55.854	56.985	-3.392					29	22	2	0	0	0	0.027462	1	3951	3951		14.137	0	1	67497			16711	6795	13621	13643	18655	18655					0.05601473788817657
HTIPLHIHII	10	Unmodified	_HTIPLHIHII_					0	0	0		ENSG00000181001|ENST00000641645|OR52N1	ENSG00000181001|ENST00000641645|OR52N1	ENSG00000181001|ENST00000641645|OR52N1	MULTI-MSMS	OvCa9_classI_Rep3	3	597.3579711914062	2	597.361308	1192.70806	-5.052	-0.0030179	0.67181	0.00040131	-4.3802	-0.0026165	597.3615454958483	157.14	0.96848	155.97	155.65	156.62	-1.1707					64	22	4	0	0	0	0.76627	2	13558	13546;13558		23.042	2.5001	1	132000			16712	7909	13622	13644	18656;18657	18657					0.11941679284950624
HTISKGKKLLD	11	Unmodified	_HTISKGKKLLD_					0	0	0		tr|A0A553SSJ5|A0A553SSJ5_NIACIAlpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_03025PE=3SV=1	tr|A0A553SSJ5|A0A553SSJ5_NIACIAlpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_03025PE=3SV=1	tr|A0A553SSJ5|A0A553SSJ5_NIACIAlpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_03025PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	620.3666381835938	2	620.374612	1238.73467	0.82151	0.00050964	-3.3839	-0.0020993	-2.5624	-0.0015896	620.3730346190733	154.94	0.54924	154.94	154.67	155.22	0					18	10	2	0	0	0	0.025958	1	18184	18184		16.007	11.101	1	26059			16713	34382	13623	13645	18658	18658					0.12485323385612901
HTKLHAIRAS	10	Unmodified	_HTKLHAIRAS_					0	0	0			REV__ENSG00000198028|ENST00000301480|ZNF560	REV__ENSG00000198028|ENST00000301480|ZNF560	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3302612304688	2	567.330539	1132.64652	-2.3399	-0.0013275	0.99796	0.00056617	-1.3419	-0.00076131	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.64697	1	14559	14559		36.447	4.9169	1	241060	+		16714	22980	13624	13646	18659	18659					0.08550747585650242
HTKLHAIRAS	10	Unmodified	_HTKLHAIRAS_					0	0	0			REV__ENSG00000198028|ENST00000301480|ZNF560	REV__ENSG00000198028|ENST00000301480|ZNF560	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3295288085938	2	567.330539	1132.64652	-3.474	-0.0019709	2.1482	0.0012187	-1.3258	-0.00075219	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.75313	1	12344	12344		24.519	3.5723	1	458690	+		16715	22980	13624	13646	18660	18660					0.08550747585650242
HTKVLQLSSRP	11	Unmodified	_HTKVLQLSSRP_					0	0	0			REV__ENST00000603865.1_1_11:75507249-75507624:+|nuORF	REV__ENST00000603865.1_1_11:75507249-75507624:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3685913085938	2	633.369861	1264.72517	-4.5141	-0.0028591	3.4388	0.002178	-1.0753	-0.00068108	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.66495	1	15649	15649		38.754	4.832	1	369460	+		16716	28049	13625	13647	18661	18661					0.10339555100085818
HTKVLSFTI	9	Unmodified	_HTKVLSFTI_					0	0	0		nc|ENSG00000122591|Q9BYI3-3|HYCC1;ENSG00000122591|ENST00000432176|HYCC1	nc|ENSG00000122591|Q9BYI3-3|HYCC1	nc|ENSG00000122591|Q9BYI3-3|HYCC1	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3030395507812	2	523.305667	1044.59678	-2.1227	-0.0011108	-1.8084	-0.00094634	-3.9311	-0.0020572	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.65371	1	11600	11600		25.574	2.5316	1	183010			16717	3543	13626	13648	18662	18662					0.07626619857023798
HTLCKLKGPKI	11	Unmodified	_HTLCKLKGPKI_					0	0	0		ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-2|CKAP5	ENSG00000175216|ENST00000529230|CKAP5	ENSG00000175216|ENST00000529230|CKAP5	MULTI-MSMS	OvCa9_classI_Rep3	3	619.3707885742188	2	619.376101	1236.73765	-5.649	-0.0034989	-1.2699	-0.00078657	-6.919	-0.0042854	619.3752552398936	159.28	1.2139	158.02	157.66	158.88	-1.267					65	23	4	0	0	0	0.72466	1	13769	13769		19.997	0	1	112740			16718	7525	13627	13649	18663	18663					0.12874875238753702
HTLEKMPSVP	10	Unmodified	_HTLEKMPSVP_					0	0	0			REV__ENSG00000163362|ENST00000413687|INAVA	REV__ENSG00000163362|ENST00000413687|INAVA	MULTI-MSMS	OvCa9_classI_Rep4_	4	569.8016967773438	2	569.799891	1137.58523	0.46516	0.00026505	2.3842	0.0013585	2.8494	0.0016236	569.8012084554681	38.552	1.4381	35.626	35.403	36.841	-2.9264					71	28	4	0	0	0	0.75313	1	1532	1532		24.519	0.31644	1	787860	+		16719	20830	13628	13650	18664	18664					0.021940547713484193
HTLLVASA	8	Unmodified	_HTLLVASA_					0	0	0		nc|ENSG00000109911|Q96EB1-2|ELP4;ENSG00000109911|ENST00000640961|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4	nc|ENSG00000109911|Q96EB1-2|ELP4	nc|ENSG00000109911|Q96EB1-2|ELP4	MULTI-SECPEP	OvCa9_classI_Rep3	3	406.2484130859375	2	406.237253	810.459953	-1.2181	-0.00049485	0.79667	0.00032364	-0.42146	-0.00017121	406.2349715251271	140.91	0.39175	139.88	139.58	139.97	-1.0339					15	7	3	0	0	0	0.028476	1	11604	11604		40.573	7.057	1	7696.4			16720	14953	13629	13651	18665	18665					0.047141306972775965
HTLLVTLGEVL	11	Unmodified	_HTLLVTLGEVL_					0	0	0			REV__ENST00000230895.10_2_5:10679888-10680089:-|nuORF	REV__ENST00000230895.10_2_5:10679888-10680089:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8560791015625	2	597.858264	1193.70197	-3.1766	-0.0018991	0.037639	2.2503E-05	-3.1389	-0.0018766	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.71191	1	14913	14913		25.574	4.6271	1	436470	+		16721	23789	13630	13652	18666	18666					0.11287116262769814
HTLPAGGR	8	Unmodified	_HTLPAGGR_					0	0	0		ENST00000339381.5_1_1:1268919-1269807:+|nuORF	ENST00000339381.5_1_1:1268919-1269807:+|nuORF	ENST00000339381.5_1_1:1268919-1269807:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.9158020019531	2	404.724844	807.435135	1.362	0.00055125	-1.234	-0.00049942	0.12807	5.1831E-05	404.7243329733435	32.781	0.48659	32.781	32.503	32.989	0					14	9	2	0	0	0	0.028476	1	1444	1444		12.207	7.8906	1	21631			16722	10549	13631	13653	18667	18667					0.02371495614579544
HTLPCILV	8	Unmodified	_HTLPCILV_					0	0	0			REV__nc|ENSG00000111785|Q9NVN3-4|RIC8B	REV__nc|ENSG00000111785|Q9NVN3-4|RIC8B	MULTI-MSMS	OvCa9_classI_Rep2	2	448.2583923339844	2	448.257131	894.499709	0.91254	0.00040905	3.3889	0.0015191	4.3015	0.0019282	448.25856617736815	142.24	1.5311	142.01	141.52	143.05	-0.22696					82	30	4	0	0	0	0.75991	1	14322	14322		21.702	3.3779	1	131560	+		16723	18059	13632	13654	18668	18668					0.048239343763498255
HTLRANKLH	9	Unmodified	_HTLRANKLH_					0	0	0			REV__nc|ENSG00000099625|Q8N350-4|CBARP	REV__nc|ENSG00000099625|Q8N350-4|CBARP	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3167114257812	2	545.317432	1088.62031	-1.7047	-0.0009296	0.076343	4.1631E-05	-1.6283	-0.00088797	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.61208	1	14181	14181		30.504	0	1	202430	+		16724	17329	13633	13655	18669	18669					0.07954478414171717
HTLSSLPLSG	10	Unmodified	_HTLSSLPLSG_					0	0	0			REV__ENSG00000115942|ENST00000234296|ORC2	REV__ENSG00000115942|ENST00000234296|ORC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.75982666015625	2	506.277106	1010.53966	-0.27865	-0.00014108	-0.13871	-7.0225E-05	-0.41736	-0.0002113	506.27622914640585	71.397	0.19872	71.397	71.267	71.466	0					7	4	2	0	0	0	0.026752	1	6882	6882		44.117	19.914	1	92093	+		16725	18279	13634	13656	18670	18670					0.03481152580627622
HTLVAVLVLTG	11	Unmodified	_HTLVAVLVLTG_					0	0	0			REV__ENSG00000188051|ENST00000341130|TMEM221	REV__ENSG00000188051|ENST00000341130|TMEM221	MULTI-MSMS	OvCa9_classI_Rep2	2	561.8450927734375	2	561.847699	1121.68084	-3.2197	-0.001809	-0.49496	-0.00027809	-3.7146	-0.002087	561.8472802195274	152.47	1.17	152.24	151.83	153	-0.22697					70	23	4	0	0	0	0.69081	1	15506	15506		32.812	4.9302	1	142980	+		16726	22686	13635	13657	18671	18671					0.12487150953870696
HTLVAVLVLTG	11	Unmodified	_HTLVAVLVLTG_					0	0	0			REV__ENSG00000188051|ENST00000341130|TMEM221	REV__ENSG00000188051|ENST00000341130|TMEM221	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.8460693359375	2	561.847699	1121.68084	-2.5142	-0.0014126	-1.0339	-0.00058092	-3.5482	-0.0019935	561.8469845001015	152.99	1.31	151.56	151.24	152.55	-1.4351					96	32	4	0	0	0	0.69081	1	15137	15137		32.812	7.2384	1	225430	+		16727	22686	13635	13657	18672	18672					0.12487150953870696
HTMEFALVK	9	Oxidation (M)	_HTM(Oxidation (M))EFALVK_		HTM(1)EFALVK		HTM(99)EFALVK	0	0	1		ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.2817993164062	2	546.281334	1090.54812	-0.40024	-0.00021865	0.15474	8.4532E-05	-0.2455	-0.00013411	546.2814208898702	65.042	1.5027	61.557	61.114	62.617	-3.4854					66	30	3	0	0	0	0.094616	2	4652	4641;4652		98.629	13.714	1	585000			16728	8017	13636	13658	18673;18674	18674		246			0.00646383225603131
HTMTTVIGRI	10	Unmodified	_HTMTTVIGRI_					0	0	0			REV__sp|P16837|UL128_HCMVAUncharacterizedproteinUL128OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL128PE=1SV=2	REV__sp|P16837|UL128_HCMVAUncharacterizedproteinUL128OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL128PE=1SV=2	MULTI-MSMS	OvCa9_classI_Rep2	2	564.8096923828125	2	564.813333	1127.61211	-2.1858	-0.0012346	-2.8571	-0.0016137	-5.0429	-0.0028483	564.8115908604212	146.02	1.2908	145.8	145.33	146.62	-0.22697					59	25	3	0	0	0	0.67931	1	14722	14722		32.812	6.1195	1	117310	+		16729	29439	13637	13659	18675	18675					0.05341163382558989
HTMTTVIGRI	10	Unmodified	_HTMTTVIGRI_					0	0	0			REV__sp|P16837|UL128_HCMVAUncharacterizedproteinUL128OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL128PE=1SV=2	REV__sp|P16837|UL128_HCMVAUncharacterizedproteinUL128OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL128PE=1SV=2	MULTI-MSMS	OvCa9_classI_Rep3	3	564.8097534179688	2	564.813333	1127.61211	-3.7232	-0.0021029	-1.27	-0.00071733	-4.9932	-0.0028202	564.8125164297064	146.26	1.3933	145.3	144.9	146.29	-0.95946					62	27	3	0	0	0	0.72319	2	12278	12278;12285		27.882	2.3082	1	156470	+		16730	29439	13637	13659	18676;18677	18676					0.05341163382558989
HTNALSFTKVV	11	Unmodified	_HTNALSFTKVV_					0	0	0			REV__ENSG00000170807|ENST00000458573|LMOD2	REV__ENSG00000170807|ENST00000458573|LMOD2	MULTI-MSMS	OvCa9_classI_Rep3	3	608.83544921875	2	608.837862	1215.66117	-3.2591	-0.0019843	1.617	0.00098452	-1.642	-0.00099973	608.8386735835178	151.65	1.4083	150.69	150.4	151.81	-0.95647					78	27	4	0	0	0	0.69808	1	12914	12914		30.318	6.795	1	213430	+		16731	21563	13638	13660	18678	18678					0.061967749431460106
HTNGKRRRLLV	11	Unmodified	_HTNGKRRRLLV_					0	0	0			REV__ENST00000463101.1_1_22:24583504-24584401:+|nuORF	REV__ENST00000463101.1_1_22:24583504-24584401:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.7622985839844	3	450.612738	1348.81638	-0.04918	-2.2161E-05	2.3397	0.0010543	2.2905	0.0010321	450.94949004452064	58.969	0.1947	58.969	58.852	59.046	0					6	4	2	0	0	0	0.026344	1	5050	5050		14.086	0	1	194710	+		16732	17350	13639	13661	18679	18679					0.15592863588062755
HTNGLVNGR	9	Unmodified	_HTNGLVNGR_					0	0	0			REV__nc|ENSG00000182853|Q7Z5L0-3|VMO1	REV__nc|ENSG00000182853|Q7Z5L0-3|VMO1	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.71710205078125	2	484.25704	966.499526	-0.48375	-0.00023426	4.4033	0.0021323	3.9196	0.0018981	484.25930166306597	61.789	0.58044	61.789	61.501	62.081	0					17	13	2	0	0	0	0.027462	1	5467	5467		20.947	0	1	192960	+		16733	22322	13640	13662	18680	18680					0.01493650700717808
HTNILLKY	8	Unmodified	_HTNILLKY_					0	0	0		tr|A0A7D6VPP9|A0A7D6VPP9_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19585PE=3SV=1	tr|A0A7D6VPP9|A0A7D6VPP9_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19585PE=3SV=1	tr|A0A7D6VPP9|A0A7D6VPP9_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19585PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	501.29034423828125	2	501.292559	1000.57057	-1.4695	-0.00073667	-2.6975	-0.0013522	-4.167	-0.0020889	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.74971	1	11066	11066		26.796	3.7536	1	97838			16734	34787	13641	13663	18681	18681					0.07030350685522535
HTNKIGRLDLV	11	Unmodified	_HTNKIGRLDLV_					0	0	0		ENSG00000180113|ENST00000316081|TDRD6;nc|ENSG00000180113|O60522-2|TDRD6	ENSG00000180113|ENST00000316081|TDRD6	ENSG00000180113|ENST00000316081|TDRD6	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3690795898438	2	633.369861	1264.72517	-4.8824	-0.0030923	3.9881	0.002526	-0.89421	-0.00056637	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.5804	5	13195	12990;13089;13182;13195;13207		46.457	20.883	1	765700			16735	7857	13642	13664	18682;18683;18684;18685;18686	18685					0.10339555100085818
HTNKIGRLDLV	11	Unmodified	_HTNKIGRLDLV_					0	0	0		ENSG00000180113|ENST00000316081|TDRD6;nc|ENSG00000180113|O60522-2|TDRD6	ENSG00000180113|ENST00000316081|TDRD6	ENSG00000180113|ENST00000316081|TDRD6	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.3687133789062	2	633.369861	1264.72517	-3.7067	-0.0023477	2.7994	0.0017731	-0.90726	-0.00057463	633.3714685413702	153.42	3.7144	151.96	150.68	154.4	-1.4516					273	94	4	0	0	0	0.72064	1	15227	15227		22.58	0.61977	1	395790			16736	7857	13642	13664	18687	18687					0.10339555100085818
HTNKIGRLDLV	11	Unmodified	_HTNKIGRLDLV_					0	0	0		ENSG00000180113|ENST00000316081|TDRD6;nc|ENSG00000180113|O60522-2|TDRD6	ENSG00000180113|ENST00000316081|TDRD6	ENSG00000180113|ENST00000316081|TDRD6	MSMS	OvCa9_classI_Rep4_	4	633.3712158203125	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	154.28	1	152.83	152.33	153.33	-1.4516								0	0	0	0.19474	1	15270	15270		29.17	3.596	1				16737	7857	13642	13664	18688	18688					0.10339555100085818
HTNMPNLLN	9	Unmodified	_HTNMPNLLN_					0	0	0		ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8	ENSG00000100888|ENST00000646647|CHD8	ENSG00000100888|ENST00000646647|CHD8	MULTI-MSMS	OvCa9_classI_Rep3	3	527.26220703125	2	527.260933	1052.50731	-0.070225	-3.7027E-05	0.10721	5.653E-05	0.03699	1.9503E-05	527.2609378955284	106.61	1.4567	105.34	104.96	106.41	-1.267					71	28	4	0	0	0	0.33652	1	7520	7520		58.782	5.4305	1	624930			16738	2115	13643	13665	18689	18689					-0.016839580940086307
HTPFPPPR	8	Unmodified	_HTPFPPPR_					0	0	0			REV__HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|41|1|sense	REV__HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|41|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.7547302246094	2	474.756144	947.497735	-0.40486	-0.00019221	-0.43123	-0.00020473	-0.83609	-0.00039694	474.75577965352994	24.713	0.70634	24.713	24.486	25.192	0					21	13	2	0	0	0	0.028476	1	494	494		19.36	0	1	32997	+		16739	28244	13644	13666	18690	18690					0.021886416827555877
HTPFSPRPQ	9	Unmodified	_HTPFSPRPQ_					0	0	0			REV__ENST00000367521.5_1_1:183905824-183906043:-|nuORF	REV__ENST00000367521.5_1_1:183905824-183906043:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.8026733398438	2	533.775065	1065.53558	-1.0451	-0.00055784	-0.5938	-0.00031695	-1.6389	-0.00087479	533.774555649235	65.726	0.5127	65.726	65.546	66.059	0					26	12	3	0	0	0	0.027448	1	6065	6065		35.618	0	1	1385500	+		16740	24900	13645	13667	18691	18691					0.005431078775700371
HTPGQIDL	8	Unmodified	_HTPGQIDL_					0	0	0		HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|288|2|anti-sense	HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|288|2|anti-sense	HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|288|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	439.7942810058594	2	440.729792	879.445031	0.094842	4.18E-05	1.4894	0.00065644	1.5843	0.00069824	440.7302943635878	112.7	0.59602	111.19	110.9	111.49	-1.5111					19	11	2	0	0	0	0.028476	1	10446	10446		28.254	0	1	15710			16741	14427	13646	13668	18692	18692					0.00048638829287028784
HTPSGIPWAL	10	Unmodified	_HTPSGIPWAL_					0	0	0		ENSG00000111885|ENST00000368468|MAN1A1;nc|ENSG00000111885|P33908-2|MAN1A1	ENSG00000111885|ENST00000368468|MAN1A1	ENSG00000111885|ENST00000368468|MAN1A1	MULTI-SECPEP	OvCa9_classI_Rep3	3	539.3002319335938	2	539.787641	1077.56073	1.3507	0.00072912	-3.5365	-0.0019089	-2.1857	-0.0011798	539.786297288361	110.73	0.31657	109.58	109.35	109.66	-1.1444					6	5	2	0	0	0	0.026639	1	8006	8006		44.117	0	1	5649.6			16742	2862	13647	13669	18693	18693					0.02505162680131434
HTQLASALLRQ	11	Unmodified	_HTQLASALLRQ_					0	0	0			REV__nc|ENSG00000054179|Q9Y5L3-3|ENTPD2	REV__nc|ENSG00000054179|Q9Y5L3-3|ENTPD2	MULTI-MSMS	OvCa9_classI_Rep3	3	413.240478515625	3	413.238566	1236.69387	2.1217	0.00087677	4.1789	0.0017269	6.3006	0.0026037	413.24014103402243	64.54	2.2304	61.547	60.987	63.218	-2.9933					100	43	4	0	0	0	0.68868	1	2502	2502		33.542	3.9908	1	320450	+		16743	16697	13648	13670	18694	18694					0.08498982065998462
HTRAHKRL	8	Unmodified	_HTRAHKRL_					0	0	0			REV__ENSG00000160961|ENST00000292530|ZNF333	REV__ENSG00000160961|ENST00000292530|ZNF333	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.8045654296875	2	509.804491	1017.59443	2.0238	0.0010317	-3.4684	-0.0017682	-1.4447	-0.0007365	509.80258654056354	136.53	4.9049	134.99	133.61	138.51	-1.5437					290	101	5	0	0	0	0.73938	1	13469	13469		31.955	2.1133	1	173450	+		16744	20684	13649	13671	18695	18695					0.08633628962559214
HTRARPSTLS	10	Unmodified	_HTRARPSTLS_					0	0	0			REV__ENST00000261918.8_1_15:74710646-74711197:-|nuORF	REV__ENST00000261918.8_1_15:74710646-74711197:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	562.343017578125	2	563.309803	1124.60505	-3.3122	-0.0018658	-2.1277	-0.0011986	-5.4399	-0.0030643	563.3084905654903	144.05	3.3727	143.06	142.19	145.56	-0.9903					118	67	2	0	0	0	0.026956	1	11966	11966		14.137	3.2716	1	36247	+		16745	23964	13650	13672	18696	18696					0.04773566826338538
HTRELADWIQ	10	Unmodified	_HTRELADWIQ_					0	0	0			REV__ENSG00000114770|ENST00000334444|ABCC5	REV__ENSG00000114770|ENST00000334444|ABCC5	MULTI-SECPEP	OvCa9_classI_Rep2	2	424.2576904296875	3	423.550921	1267.63093	-1.0631	-0.00045028	0.85939	0.000364	-0.20372	-8.6286E-05	423.5512010722097	53.735	1.1443	50.921	50.628	51.772	-2.8139					43	22	3	0	0	0	0.027088	1	3726	3726		6.001	0	1	30215	+		16746	18201	13651	13673	18697	18697					0.007824162779343169
HTRKPVAS	8	Unmodified	_HTRKPVAS_					0	0	0			REV__IFNE|p.K44Tfs*40|1|0.06|ENSG00000184995|chr9:21481564-21481565|-/G|frameshift_variant	REV__IFNE|p.K44Tfs*40|1|0.06|ENSG00000184995|chr9:21481564-21481565|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	448.2587585449219	2	448.259051	894.503549	-2.462	-0.0011036	2.7472	0.0012315	0.28525	0.00012786	448.2601337945915	142.71	1.2357	141.7	141.38	142.62	-1.0102					68	24	5	0	0	0	0.7549	2	11876	11876;11894		24.203	3.6355	1	329850	+		16747	28297	13652	13674	18698;18699	18698					0.05207740194430244
HTRPAAPLAR	10	Unmodified	_HTRPAAPLAR_					0	0	0		ENST00000437972.1_2_3:48229548-48229873:-|nuORF;ENST00000302506.7_2_3:48229548-48229785:-|nuORF	ENST00000437972.1_2_3:48229548-48229873:-|nuORF	ENST00000437972.1_2_3:48229548-48229873:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3155517578125	2	545.317432	1088.62031	-1.7047	-0.0009296	0.076343	4.1631E-05	-1.6283	-0.00088797	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.73378	1	14111	14111		26.693	1.1189	1	202430			16748	10198	13653	13675	18700	18700					0.07954478414171717
HTRPAGRAARP	11	Unmodified	_HTRPAGRAARP_					0	0	0			REV__ENST00000608517.1_1_1:178694567-178695308:-|nuORF	REV__ENST00000608517.1_1_1:178694567-178695308:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	595.3388671875	2	595.336687	1188.65882	1.0211	0.00060792	1.4953	0.00089022	2.5165	0.0014981	595.3374743874397	153.38	1.4722	153.38	152.95	154.42	0					90	29	5	0	0	0	0.69455	1	17988	17988		31.53	3.4483	1	976430	+		16749	28097	13654	13676	18701	18701					0.07203784048692796
HTRPAGRAARP	11	Unmodified	_HTRPAGRAARP_					0	0	0			REV__ENST00000608517.1_1_1:178694567-178695308:-|nuORF	REV__ENST00000608517.1_1_1:178694567-178695308:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	595.3368530273438	2	595.336687	1188.65882	-2.0554	-0.0012237	2.6185	0.0015589	0.56307	0.00033522	595.3381573566538	149.58	1.2857	148.14	147.64	148.93	-1.4344					61	25	3	0	0	0	0.63561	1	14733	14733		41.427	14.734	1	176250	+		16750	28097	13654	13676	18702	18702					0.07203784048692796
HTRQRRIFLSW	11	Unmodified	_HTRQRRIFLSW_					0	0	0		ENSG00000215910|ENST00000688073|C1orf167;nc|nan|Q5SNV9-2|C1orf167;nc|nan|Q5SNV9-3|C1orf167	ENSG00000215910|ENST00000688073|C1orf167	ENSG00000215910|ENST00000688073|C1orf167	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.8067321777344	3	500.616259	1498.82695	-0.54795	-0.00027431	-3.4234	-0.0017138	-3.9713	-0.0019881	500.61449686061667	58.319	0.3978	54.927	54.802	55.2	-3.392					13	7	2	0	0	0	0.026277	1	3820	3820		12.957	6.9564	1	41022			16751	9211	13655	13677	18703	18703					0.09748846242496256
HTRTLLQKNK	10	Unmodified	_HTRTLLQKNK_					0	0	0			REV__tr|A0A553SIU6|A0A553SIU6_NIACIComFfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15555PE=4SV=1	REV__tr|A0A553SIU6|A0A553SIU6_NIACIComFfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15555PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8685302734375	2	619.870028	1237.7255	-3.8587	-0.0023919	2.9348	0.0018192	-0.92393	-0.00057272	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.72319	1	15543	15543		27.882	4.8398	1	492670	+		16752	29931	13656	13678	18704	18704					0.11614974819940471
HTSITTFAKKR	11	Unmodified	_HTSITTFAKKR_					0	0	0			REV__ENSG00000196071|ENST00000358120|OR2L13	REV__ENSG00000196071|ENST00000358120|OR2L13	MULTI-MSMS	OvCa9_classI_Rep4_	4	645.3734741210938	2	645.369861	1288.72517	0.14887	9.6079E-05	-0.44714	-0.00028857	-0.29826	-0.00019249	645.3693996208364	90.956	1.8331	88.381	88.007	89.84	-2.575					104	35	5	0	0	0	0.69455	1	7876	7876		31.53	1.2121	1	395330	+		16753	22779	13657	13679	18705	18705					0.09235555100076454
HTSLIGCIKAL	11	Unmodified	_HTSLIGCIKAL_					0	0	0		ENSG00000100592|ENST00000360909|DAAM1;nc|ENSG00000100592|Q9Y4D1|DAAM1;DAAM2|p.E478Rfs*2|1|0.1|ENSG00000146122|chr6:39878475-39878475|G/-|frameshift_variant;nc|ENSG00000100592|Q9Y4D1-3|DAAM1;DAAM2|p.R1008Pfs*19|1|0.12|ENSG00000146122|chr6:39901848-39901849|-/CAGC|frameshift_variant;nc|ENSG00000146122|Q86T65-4|DAAM2;ENSG00000146122|ENST00000274867|DAAM2	ENSG00000100592|ENST00000360909|DAAM1	ENSG00000100592|ENST00000360909|DAAM1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	579.2665405273438	2	578.331359	1154.64816	0.83082	0.00048049	-0.70049	-0.00040512	0.13033	7.5373E-05	578.3305286261223	67.7	0.87981	64.21	63.938	64.818	-3.4902					29	17	3	0	0	0	0.026099	1	4966	4966		9.1829	0	1	78755			16754	2087	13658	13680	18706	18706					0.07702620559393836
HTSRVLSL	8	Unmodified	_HTSRVLSL_					0	0	0		ENSG00000117399|ENST00000310955|CDC20	ENSG00000117399|ENST00000310955|CDC20	ENSG00000117399|ENST00000310955|CDC20	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.7677917480469	2	456.766709	911.518865	0.27779	0.00012689	-1.1046	-0.00050454	-0.8268	-0.00037766	456.76605371304345	61.4	2.227	57.969	57.394	59.621	-3.4311					91	45	3	0	0	0	0.7202	1	4217	4217		39.253	5.0803	1	351350			16755	3252	13659	13681	18707	18707					0.059566069916286324
HTTEILRLL	9	Unmodified	_HTTEILRLL_					0	0	0		ENST00000495856.1_1_1:95507120-95538397:-|nuORF;ENSG00000172339|ENST00000370205|ALG14	ENST00000495856.1_1_1:95507120-95538397:-|nuORF	ENST00000495856.1_1_1:95507120-95538397:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.3286743164062	2	548.329673	1094.64479	0.44938	0.00024641	-1.4393	-0.00078921	-0.98991	-0.0005428	548.328636481344	110.81	1.3678	109.21	108.75	110.12	-1.6011					45	25	3	0	0	0	0.64427	1	10212	10212		26.693	1.2427	1	68245			16756	7290	13660	13682	18708	18708					0.10125693777035849
HTTEILRLL	9	Unmodified	_HTTEILRLL_					0	0	0		ENST00000495856.1_1_1:95507120-95538397:-|nuORF;ENSG00000172339|ENST00000370205|ALG14	ENST00000495856.1_1_1:95507120-95538397:-|nuORF	ENST00000495856.1_1_1:95507120-95538397:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	548.329673	1094.64479	0.3094	0.00016965	-0.94748	-0.00051953	-0.63808	-0.00034988	548.3289800583451	109.25	1.0395	109.08	108.82	109.86	-0.17236	-0.08381	-8.1345E-05	NaN	26.693	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51929			16757	7290	13660	13682							0.10125693777035849
HTTEILRLL	9	Unmodified	_HTTEILRLL_					0	0	0		ENST00000495856.1_1_1:95507120-95538397:-|nuORF;ENSG00000172339|ENST00000370205|ALG14	ENST00000495856.1_1_1:95507120-95538397:-|nuORF	ENST00000495856.1_1_1:95507120-95538397:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	548.329673	1094.64479	-0.1489	-8.1648E-05	-0.63508	-0.00034823	-0.78398	-0.00042988	548.3292060375273	110.34	0.93982	109.2	108.87	109.81	-1.1444	0.039284	0.00026125	NaN	26.693	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47153			16758	7290	13660	13682							0.10125693777035849
HTTILSKFV	9	Unmodified	_HTTILSKFV_					0	0	0			REV__nc|ENSG00000073921|Q13492-4|PICALM	REV__nc|ENSG00000073921|Q13492-4|PICALM	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3040771484375	2	523.305667	1044.59678	-0.69596	-0.0003642	-3.2951	-0.0017244	-3.9911	-0.0020886	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.59259	2	13755	13755;14076		32.812	3.6994	1	130240	+		16759	16943	13661	13683	18709;18710	18709					0.0762661985700106
HTTLAIDYLDI	11	Unmodified	_HTTLAIDYLDI_					0	0	0		ENST00000508110.5_1_4:187347442-187347706:-|nuORF	ENST00000508110.5_1_4:187347442-187347706:-|nuORF	ENST00000508110.5_1_4:187347442-187347706:-|nuORF	MSMS	OvCa99_classI_Rep5	1	637.8358154296875	2	637.834985	1273.65542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.37	1	124.37	123.87	124.87	0								0	0	0	0.19369	1	14354	14354		36.447	2.5251	1				16760	12938	13662	13684	18711	18711					0.029536316407984486
HTTLIEVLQ	9	Unmodified	_HTTLIEVLQ_					0	0	0			REV__nc|ENSG00000022556|Q9NX02-4|NLRP2	REV__nc|ENSG00000022556|Q9NX02-4|NLRP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.283203125	2	527.300581	1052.58661	-0.5821	-0.00030694	1.8816	0.00099214	1.2995	0.0006852	527.3014878588443	57.234	0.4585	53.889	53.679	54.138	-3.3449					12	8	3	0	0	0	0.027448	1	3733	3733		44.117	0	1	27419	+		16761	16552	13663	13685	18712	18712					0.06242012131770025
HTTQEEVSI	9	Unmodified	_HTTQEEVSI_					0	0	0		ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.776611328125	2	522.253828	1042.4931	-1.0965	-0.00057266	2.8146	0.0014699	1.7181	0.00089728	522.2552348940052	36.234	0.32177	36.234	36.029	36.351	0					10	6	2	0	0	0	0.027462	1	1885	1885		29.15	7.4472	1	68576			16762	5329	13664	13686	18713	18713					-0.026443320413363836
HTTRKELSEI	10	Unmodified	_HTTRKELSEI_					0	0	0		tr|A0A7D6VMJ4|A0A7D6VMJ4_9CLOTNitroreductasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15665PE=3SV=1	tr|A0A7D6VMJ4|A0A7D6VMJ4_9CLOTNitroreductasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15665PE=3SV=1	tr|A0A7D6VMJ4|A0A7D6VMJ4_9CLOTNitroreductasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15665PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	606.8172607421875	2	607.330402	1212.64625	1.4026	0.00085187	1.419	0.00086181	2.8217	0.0017137	607.3310637752443	97.418	0.91753	95.039	94.758	95.675	-2.3786					38	17	3	0	0	0	0.026782	1	8630	8630		30.318	0	1	141100			16763	34660	13665	13687	18714	18714					0.04843283075138061
HTTSIMLF	8	Unmodified	_HTTSIMLF_					0	0	0			REV__chr1:71075639-71076795|289|14.53|0.28|5.68|-|2|TE_info:L2,L2_dup1626,L2,LINE,acceptor,-,71075270,71075639|None,ZRANB2|7	REV__chr1:71075639-71076795|289|14.53|0.28|5.68|-|2|TE_info:L2,L2_dup1626,L2,LINE,acceptor,-,71075270,71075639|None,ZRANB2|7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.30157470703125	2	475.244221	948.473888	-0.57559	-0.00027355	2.2311	0.0010603	1.6556	0.00078679	475.2464664735817	66.222	0.43472	62.732	62.467	62.902	-3.4902					14	8	2	0	0	0	0.028476	1	4807	4807		37.028	0	1	24510	+		16764	15835	13666	13688	18715	18715					-0.0024095986592556073
HTVALHKDL	9	Unmodified	_HTVALHKDL_					0	0	0			REV__ENSG00000168612|ENST00000372523|ZSWIM1	REV__ENSG00000168612|ENST00000372523|ZSWIM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.2506713867188	2	517.293091	1032.57163	2.2746	0.0011767	1.2836	0.00066401	3.5583	0.0018407	517.2934461812514	75.528	0.27879	75.528	75.444	75.723	0					10	6	2	0	0	0	0.027462	1	7540	7540		23.042	0	1	465530	+		16765	21387	13667	13689	18716	18716					0.05664565054416926
HTVGPIAR	8	Unmodified	_HTVGPIAR_					0	0	0		nc|ENSG00000172264|A1Z1Q3|MACROD2;ENSG00000172264|ENST00000684519|MACROD2	nc|ENSG00000172264|A1Z1Q3|MACROD2	nc|ENSG00000172264|A1Z1Q3|MACROD2	MULTI-MSMS	OvCa99_classI_Rep5	1	425.7483825683594	2	425.748319	849.482085	-0.23999	-0.00010217	-0.57615	-0.00024529	-0.81613	-0.00034747	425.7482973863732	38.599	4.242	38.599	38.254	42.496	0					173	95	5	0	0	0	0.74229	1	2278	2278		30.504	3.7075	1	51988000			16766	7286	13668	13690	18717	18717					0.05132355165710578
HTVHVEPSQET	11	Unmodified	_HTVHVEPSQET_					0	0	0		nc|ENSG00000114455|Q9UM44-2|HHLA2;ENSG00000114455|ENST00000467761|HHLA2	nc|ENSG00000114455|Q9UM44-2|HHLA2	nc|ENSG00000114455|Q9UM44-2|HHLA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	421.745849609375	3	421.87032	1262.58913	-0.42136	-0.00017776	-0.12305	-5.1911E-05	-0.54441	-0.00022967	421.86920790325036	42.203	0.94234	42.203	41.94	42.883	0					53	21	4	0	0	0	0.026068	1	2666	2666		16.53	0	1	290840			16767	3022	13669	13691	18718	18718					-0.031661842012454144
HTVIGKLGCTP	11	Unmodified	_HTVIGKLGCTP_					0	0	0			REV__nc|ENSG00000151388|P58397-2|ADAMTS12	REV__nc|ENSG00000151388|P58397-2|ADAMTS12	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.2988891601562	2	563.307884	1124.60121	1.4663	0.00082598	-1.0752	-0.00060565	0.39113	0.00022033	563.3067576577289	139.42	0.28891	139.42	139.27	139.56	0					8	5	2	0	0	0	0.025528	1	16294	16294		28.081	17.816	1	23965	+		16768	28926	13670	13692	18719	18719					0.04389761008246751
HTVKKLFE	8	Unmodified	_HTVKKLFE_					0	0	0		ENSG00000128000|ENST00000434248|ZNF780B	ENSG00000128000|ENST00000434248|ZNF780B	ENSG00000128000|ENST00000434248|ZNF780B	MULTI-MSMS	OvCa9_classI_Rep2	2	501.2900695800781	2	501.292559	1000.57057	-0.80197	-0.00040202	-3.5119	-0.0017605	-4.3139	-0.0021625	501.2906816095173	135.63	4.8104	135.4	133.71	138.52	-0.22697					221	98	3	0	0	0	0.75723	1	13683	13683		23.042	0	1	70595			16769	3861	13671	13693	18720	18720					0.07030350685522535
HTVKQKLAL	9	Unmodified	_HTVKQKLAL_					0	0	0		ENSG00000010818|ENST00000367603|HIVEP2	ENSG00000010818|ENST00000367603|HIVEP2	ENSG00000010818|ENST00000367603|HIVEP2	MULTI-MSMS	OvCa9_classI_Rep2	2	519.3262939453125	2	519.326934	1036.63931	0.91528	0.00047533	-0.11424	-5.9329E-05	0.80104	0.000416	519.3263854293617	112.97	1.2349	112.84	112.62	113.86	-0.12174					63	24	3	0	0	0	0.40667	1	10715	10715		51.335	1.8939	1	264040			16770	950	13672	13694	18721	18721					0.12246014985225884
HTVLPSQIQHQ	11	Unmodified	_HTVLPSQIQHQ_					0	0	0		nc|ENSG00000112137|Q9C0D0-2|PHACTR1;ENSG00000112137|ENST00000332995|PHACTR1	nc|ENSG00000112137|Q9C0D0-2|PHACTR1	nc|ENSG00000112137|Q9C0D0-2|PHACTR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	643.4076538085938	2	644.343843	1286.67313	-6.0641	-0.0039074	2.4858	0.0016017	-3.5783	-0.0023056	644.3484655345192	163.66	0.90149	162.03	161.7	162.61	-1.6336					118	24	6	0	0	0	0.025759	1	16210	16210		35.152	7.0705	1	536340			16771	2879	13673	13695	18722	18722					0.04126391686327224
HTVLRLNL	8	Unmodified	_HTVLRLNL_					0	0	0			REV__ENST00000504225.1_1_5:180278346-180278472:-|nuORF	REV__ENST00000504225.1_1_5:180278346-180278472:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	483.299560546875	2	483.298176	964.581799	0.10853	5.2451E-05	-0.65738	-0.00031771	-0.54886	-0.00026526	483.29762094324343	70.784	1.1382	70.784	70.369	71.507	0					62	28	3	0	0	0	0.62474	1	6798	6798		58.782	3.2778	1	1432400	+		16772	26857	13674	13696	18723	18723					0.09809172779637265
HTVQLQLRSLA	11	Unmodified	_HTVQLQLRSLA_					0	0	0		nc|ENSG00000149582|Q86YD3-3|TMEM25;ENST00000529001.5_1_11:118402516-118404307:+|nuORF;nc|ENSG00000149582|Q86YD3-5|TMEM25;nc|ENSG00000149582|Q86YD3-2|TMEM25;nc|ENSG00000149582|Q86YD3-4|TMEM25;ENSG00000149582|ENST00000313236|TMEM25;ENST00000524522.5_1_11:118402605-118405292:+|nuORF	nc|ENSG00000149582|Q86YD3-3|TMEM25	nc|ENSG00000149582|Q86YD3-3|TMEM25	MULTI-MSMS	OvCa9_classI_Rep3	3	633.375732421875	2	633.369861	1264.72517	-4.8824	-0.0030923	3.9881	0.002526	-0.89421	-0.00056637	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.68399	1	13235	13235		35.152	0	1	765700			16773	5477	13675	13697	18724	18724					0.10339555100085818
HTVRKKEPR	9	Unmodified	_HTVRKKEPR_					0	0	0			REV__RNF113A|p.Q131Ffs*15|1|0.03|ENSG00000125352|chrX:119871223-119871224|-/AA|frameshift_variant	REV__RNF113A|p.Q131Ffs*15|1|0.03|ENSG00000125352|chrX:119871223-119871224|-/AA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8421630859375	2	575.843813	1149.67307	-4.018	-0.0023138	2.8816	0.0016594	-1.1364	-0.0006544	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.5811	1	12287	12287		34.173	6.2903	1	445630	+		16774	18718	13676	13698	18725	18725					0.10422436476983421
HTVRKKEPR	9	Unmodified	_HTVRKKEPR_					0	0	0			REV__RNF113A|p.Q131Ffs*15|1|0.03|ENSG00000125352|chrX:119871223-119871224|-/AA|frameshift_variant	REV__RNF113A|p.Q131Ffs*15|1|0.03|ENSG00000125352|chrX:119871223-119871224|-/AA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.843017578125	2	575.843813	1149.67307	-1.5734	-0.00090602	0.62521	0.00036002	-0.94817	-0.000546	575.8439449675558	145.55	4.7888	144.12	142.78	147.57	-1.4357					360	93	6	0	0	0	0.64427	1	14320	14320		26.693	2.1737	1	565210	+		16775	18718	13676	13698	18726	18726					0.10422436476983421
HTVRLPCRKR	10	Unmodified	_HTVRLPCRKR_					0	0	0		ENST00000597076.5_1_19:17881245-17885205:+|nuORF	ENST00000597076.5_1_19:17881245-17885205:+|nuORF	ENST00000597076.5_1_19:17881245-17885205:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	633.369140625	2	633.372215	1264.72988	-4.5141	-0.0028591	-0.278	-0.00017608	-4.7921	-0.0030352	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.79213	1	15575	15575		19.997	0.89325	1	369460			16776	14187	13677	13699	18727	18727					0.1081016076184369
HTVRSLSL	8	Unmodified	_HTVRSLSL_					0	0	0		nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E	nc|ENSG00000154001|Q16537-3|PPP2R5E	nc|ENSG00000154001|Q16537-3|PPP2R5E	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.76812744140625	2	456.766709	911.518865	0.27779	0.00012689	-1.1046	-0.00050454	-0.8268	-0.00037766	456.76605371304345	61.4	2.227	57.969	57.394	59.621	-3.4311					91	45	3	0	0	0	0.66992	1	4204	4204		49.442	7.0454	1	351350			16777	5706	13678	13700	18728	18728					0.059566069916286324
HTVSLTNKV	9	Unmodified	_HTVSLTNKV_					0	0	0		ENST00000311117.7_1_7:104752665-104752818:+|nuORF	ENST00000311117.7_1_7:104752665-104752818:+|nuORF	ENST00000311117.7_1_7:104752665-104752818:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.323486328125	2	499.785099	997.555644	-0.76371	-0.00038169	0.58516	0.00029246	-0.17855	-8.9236E-05	499.78524621248727	51.932	0.59549	51.932	51.708	52.304	0					20	13	2	0	0	0	0.027462	1	4087	4087		24.203	6.8378	1	555120			16778	10294	13679	13701	18729	18729					0.05676858817514585
HTWLIFEFLLE	11	Unmodified	_HTWLIFEFLLE_					0	0	0		chr3:150557676-150558388|104|12.05|0.29|5.37|+|0|TE_info:AluSx,AluSx_dup22914,Alu,SINE,donor,-,150557401,150557676|None,EIF2A|1	chr3:150557676-150558388|104|12.05|0.29|5.37|+|0|TE_info:AluSx,AluSx_dup22914,Alu,SINE,donor,-,150557401,150557676|None,EIF2A|1	chr3:150557676-150558388|104|12.05|0.29|5.37|+|0|TE_info:AluSx,AluSx_dup22914,Alu,SINE,donor,-,150557401,150557676|None,EIF2A|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	482.27960205078125	3	483.258856	1446.75474	-0.12498	-6.0397E-05	0.23655	0.00011431	0.11157	5.3917E-05	483.2589532657344	107.19	0.1489	106.88	106.77	106.92	-0.30836					4	2	2	0	0	0	0.026232	1	10005	10005		21.032	3.8655	1	8915.8			16779	476	13680	13702	18730	18730					0.04923074325597554
HTWTKTIVN	9	Unmodified	_HTWTKTIVN_					0	0	0			REV__chr19:39679434-39681998|305|13.11|0.43|4.91|+|2|LGALS17A,LGALS17A|1	REV__chr19:39679434-39681998|305|13.11|0.43|4.91|+|2|LGALS17A,LGALS17A|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.8544311523438	2	550.298373	1098.58219	3.5737	0.0019666	0.60642	0.00033371	4.1802	0.0023003	550.800989395624	132.99	0.24466	131.49	131.39	131.63	-1.5014					6	4	2	0	0	0	0.027462	1	12810	12810		9.7057	0	1	5267.9	+		16780	15976	13681	13703	18731	18731					0.03684547708849095
HTYLISSN	8	Unmodified	_HTYLISSN_					0	0	0		ENST00000523706.5_1_6:158066772-158067346:+|nuORF;nc|ENSG00000175048|Q8IZN3-2|ZDHHC14;ENSG00000175048|ENST00000359775|ZDHHC14	ENST00000523706.5_1_6:158066772-158067346:+|nuORF	ENST00000523706.5_1_6:158066772-158067346:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	467.2549133300781	2	467.735074	933.455596	-0.39336	-0.00018399	3.9804	0.0018618	3.587	0.0016778	467.7366649201016	55.784	1.0119	52.49	52.008	53.02	-3.2944					24	19	2	0	0	0	0.028476	1	3491	3491		45.952	0	1	37958			16781	7508	13682	13704	18732	18732					-0.013793785162874883
HTYVGNKK	8	Unmodified	_HTYVGNKK_					0	0	0			REV__tr|A0A553SSW4|A0A553SSW4_NIACISulfataseOS=NialliacirculansOX=1397GN=CEQ21_03910PE=4SV=1	REV__tr|A0A553SSW4|A0A553SSW4_NIACISulfataseOS=NialliacirculansOX=1397GN=CEQ21_03910PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	473.2423400878906	2	473.758884	945.503215	-1.228	-0.00058177	1.2087	0.00057262	-0.0193	-9.1437E-06	473.7592205528243	53.885	1.0941	51.072	50.529	51.623	-2.8139					47	21	3	0	0	0	0.028476	1	3641	3641		25.45	0	1	65706	+		16782	30887	13683	13705	18733	18733					0.028283204745775947
HVAEARLLL	9	Unmodified	_HVAEARLLL_					0	0	0			REV__ENST00000606448.1_1_13:103047077-103047416:+|nuORF	REV__ENST00000606448.1_1_13:103047077-103047416:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	511.31011962890625	2	511.311284	1020.60801	-0.51063	-0.00026109	-0.14803	-7.5691E-05	-0.65866	-0.00033678	511.3111522526894	74.16	1.4606	72.189	71.798	73.259	-1.9711					87	27	4	0	0	0	0.38529	2	6061	6061;6066		53.351	3.3269	1	463700	+		16783	28078	13684	13706	18734;18735	18734					0.09853441951145214
HVAEARLLL	9	Unmodified	_HVAEARLLL_					0	0	0			REV__ENST00000606448.1_1_13:103047077-103047416:+|nuORF	REV__ENST00000606448.1_1_13:103047077-103047416:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	511.311767578125	2	511.311284	1020.60801	-0.30592	-0.00015642	-0.30288	-0.00015486	-0.6088	-0.00031129	511.3111316521226	74.24	1.5187	71.767	71.387	72.906	-2.4733					104	30	4	0	0	0	0.38529	1	3687	3687		53.351	7.3995	1	678530	+		16784	28078	13684	13706	18736	18736					0.09853441951145214
HVAPILRVAM	10	Unmodified	_HVAPILRVAM_					0	0	0			REV__ITPRIPL2|p.R442Sfs*36|1|0.08|ENSG00000205730|chr16:19115786-19115787|-/CACTCTGTCACCCA|frameshift_variant	REV__ITPRIPL2|p.R442Sfs*36|1|0.08|ENSG00000205730|chr16:19115786-19115787|-/CACTCTGTCACCCA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8305053710938	2	553.828786	1105.64302	0.13278	7.3535E-05	2.4337	0.0013478	2.5664	0.0014214	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.56767	4	13847	13847;13943;13978;14014		45.952	16.846	1	400120	+		16785	23226	13685	13707	18737;18738;18739;18740	18737					0.09442361487435846
HVAPLPDTY	9	Unmodified	_HVAPLPDTY_					0	0	0		ENST00000481436.5_1_5:177642388-177652501:-|nuORF;ENST00000493197.5_1_5:177638946-177656967:-|nuORF;ENST00000494126.6_1_5:177641847-177659033:-|nuORF;AFMID-AGXT2L2|1|fusion;ENSG00000175309|ENST00000308158|PHYKPL	ENST00000481436.5_1_5:177642388-177652501:-|nuORF	ENST00000481436.5_1_5:177642388-177652501:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.3323974609375	2	506.758549	1011.50255	-0.32772	-0.00016607	1.4138	0.00071647	1.0861	0.00055039	507.26091303285835	57.751	1.9212	54.406	53.425	55.347	-3.3449					123	37	4	0	0	0	0.027462	1	3737	3737		40.573	1.7665	1	244630			16786	47	13686	13708	18741	18741					-0.0027451896517050045
HVAVLGSPLA	10	Unmodified	_HVAVLGSPLA_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000580914.1_1_17:65720296-65722769:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	OvCa9_classI_Rep2	2	482.2842102050781	2	482.284734	962.554916	1.4873	0.00071731	-1.7499	-0.00084393	-0.26255	-0.00012662	482.2838148117403	88.658	2.4683	87.29	86.839	89.307	-1.3676					116	49	4	0	0	0	0.26259	6	7769	7769;7775;7781;7787;7793;7799		85.359	24.388	1	1008100			16787	4025	13687	13709	18742;18743;18744;18745;18746;18747	18742					0.07214064168465484
HVAVLGSPLA	10	Unmodified	_HVAVLGSPLA_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000580914.1_1_17:65720296-65722769:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	OvCa9_classI_Rep3	3	482.28509521484375	2	482.284734	962.554916	-0.49751	-0.00023994	0.076092	3.6698E-05	-0.42142	-0.00020325	482.2847079453586	89.393	3.1361	87.262	86.846	89.982	-2.1309					129	61	4	0	0	0	0.35697	6	5501	5485;5491;5495;5501;5508;5528		73.975	31.579	1	1830700			16788	4025	13687	13709	18748;18749;18750;18751;18752;18753	18751					0.07214064168465484
HVAVLGSPLA	10	Unmodified	_HVAVLGSPLA_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000580914.1_1_17:65720296-65722769:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.2861328125	2	482.284734	962.554916	0.4153	0.00020029	-0.83845	-0.00040437	-0.42314	-0.00020407	482.28428570779477	89.843	3.2427	87.268	86.851	90.093	-2.575					120	63	4	0	0	0	0.45225	4	7741	7707;7729;7741;7754		60.972	9.2347	1	1527800			16789	4025	13687	13709	18754;18755;18756;18757	18756					0.07214064168465484
HVAVSRRIVAS	11	Unmodified	_HVAVSRRIVAS_					0	0	0			REV__ENST00000513490.1_1_5:32100951-32108238:+|nuORF	REV__ENST00000513490.1_1_5:32100951-32108238:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8561401367188	2	597.856921	1193.69929	-3.1766	-0.0018991	2.2834	0.0013652	-0.89312	-0.00053396	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.7046	1	14954	14954		28.081	2.5074	1	436470	+		16790	26976	13688	13710	18758	18758					0.11018705648461946
HVDFKRAE	8	Unmodified	_HVDFKRAE_					0	0	0		tr|A0A553SIB0|A0A553SIB0_NIACIATPsynthaseepsilonchainOS=NialliacirculansOX=1397GN=atpCPE=3SV=1	tr|A0A553SIB0|A0A553SIB0_NIACIATPsynthaseepsilonchainOS=NialliacirculansOX=1397GN=atpCPE=3SV=1	tr|A0A553SIB0|A0A553SIB0_NIACIATPsynthaseepsilonchainOS=NialliacirculansOX=1397GN=atpCPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.3155822753906	2	501.261791	1000.50903	1.9671	0.00098605	-2.9869	-0.0014972	-1.0197	-0.00051115	501.2604030812917	118	0.97766	118	117.46	118.44	0					25	20	2	0	0	0	0.028476	1	13492	13492		24.203	0	1	57336			16791	33362	13689	13711	18759	18759					0.008794189862328494
HVDLCRAG	8	Unmodified	_HVDLCRAG_					0	0	0			REV__ENST00000265239.10_1_3:197686563-197686835:-|nuORF	REV__ENST00000265239.10_1_3:197686563-197686835:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	435.7196350097656	2	435.716162	869.41777	0.92393	0.00040257	3.5035	0.0015265	4.4274	0.0019291	435.71765440783844	57.713	1.2965	57.713	57.438	58.734	0					79	30	4	0	0	0	0.66704	1	4876	4876		50.025	2.1089	1	5294500	+		16792	24029	13690	13712	18760	18760					-0.022161679827377156
HVDLCRAG	8	Unmodified	_HVDLCRAG_					0	0	0			REV__ENST00000265239.10_1_3:197686563-197686835:-|nuORF	REV__ENST00000265239.10_1_3:197686563-197686835:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	435.71905517578125	2	435.716162	869.41777	3.2494	0.0014158	3.505	0.0015272	6.7544	0.002943	435.7176844785988	75.581	2.3802	75.581	75.292	77.672	0					162	58	5	0	0	0	0.59148	1	7626	7626		65.803	15.779	1	26670000	+		16793	24029	13690	13712	18761	18761					-0.022161679827377156
HVEANKAIV	9	Unmodified	_HVEANKAIV_					0	0	0		tr|A0A7D6ZXZ6|A0A7D6ZXZ6_9CLOTDegVfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00220PE=4SV=1	tr|A0A7D6ZXZ6|A0A7D6ZXZ6_9CLOTDegVfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00220PE=4SV=1	tr|A0A7D6ZXZ6|A0A7D6ZXZ6_9CLOTDegVfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00220PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	490.7815246582031	2	490.779816	979.545079	-1.0227	-0.00050194	-0.023578	-1.1571E-05	-1.0463	-0.00051351	490.77984330918713	49.966	2.5345	49.966	49.679	52.214	0					117	58	4	0	0	0	0.50066	1	3748	3748		42.474	1.9018	1	38266000			16794	35901	13691	13713	18762	18762					0.05448876163075056
HVEEWNKK	8	Unmodified	_HVEEWNKK_					0	0	0			REV__ENSG00000151023|ENST00000331161|ENKUR	REV__ENSG00000151023|ENST00000331161|ENKUR	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.235595703125	2	535.274898	1068.53524	-0.07148	-3.8261E-05	-3.6494	-0.0019534	-3.7209	-0.0019917	535.2726989796729	47.029	0.53103	47.029	46.762	47.294	0					22	11	3	0	0	0	0.028476	1	3341	3341		28.254	6.2944	1	225810	+		16795	20213	13692	13714	18763	18763					0.0037168815770201036
HVEVLGRLL	9	Unmodified	_HVEVLGRLL_					0	0	0			REV__ENST00000417381.5_1_22:28315512-28315788:+|nuORF	REV__ENST00000417381.5_1_22:28315512-28315788:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	518.3190307617188	2	518.319109	1034.62366	0.49653	0.00025736	-2.2235	-0.0011525	-1.727	-0.00089515	518.3179257681784	139.8	5.0824	139.8	139.03	144.11	0					338	103	5	0	0	0	0.46377	1	16425	16425		45.952	1.8352	1	7167300	+		16796	25559	13693	13715	18764	18764					0.1077372846821163
HVEVMKVL	8	Unmodified	_HVEVMKVL_					0	0	0		ARFGEF3|p.Q112H|1|0.46|ENSG00000112379|chr6:138210026-138210026|G/T|missense_variant	ARFGEF3|p.Q112H|1|0.46|ENSG00000112379|chr6:138210026-138210026|G/T|missense_variant	ARFGEF3|p.Q112H|1|0.46|ENSG00000112379|chr6:138210026-138210026|G/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	477.7774963378906	2	477.775688	953.536823	-0.90427	-0.00043204	4.0737	0.0019463	3.1695	0.0015143	477.777824730799	27.673	0.49942	27.673	27.542	28.041	0					19	9	4	0	0	0	0.64377	1	841	841		54.765	6.8491	1	319740			16797	105	13694	13716	18765	18765					0.05819605922113169
HVEWYYKGST	10	Unmodified	_HVEWYYKGST_					0	0	0			REV__ENSG00000233802|ENST00000623787|TRIM49D2;REV__ENSG00000204449|ENST00000448984|TRIM49C	REV__ENSG00000233802|ENST00000623787|TRIM49D2	MULTI-SECPEP	OvCa99_classI_Rep5	1	424.21929931640625	3	423.868139	1268.58259	0.18088	7.6669E-05	-0.34879	-0.00014784	-0.16791	-7.1171E-05	423.8682175157529	56.785	0.38024	56.785	56.538	56.918	0					15	8	2	0	0	0	0.026782	1	4733	4733		17.167	0	1	132050	+		16798	23352;21420	13695	13717	18766	18766					-0.0409607736196449
HVEYIIRQ	8	Unmodified	_HVEYIIRQ_					0	0	0			REV__TP53BP2|p.D956H|1|0.32|ENSG00000143514|chr1:223792519-223792519|C/G|missense_variant	REV__TP53BP2|p.D956H|1|0.32|ENSG00000143514|chr1:223792519-223792519|C/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7528686523438	2	529.293091	1056.57163	1.6257	0.00086048	-0.99411	-0.00052617	0.63161	0.0003343	529.2926531404606	98.54	0.26437	98.54	98.419	98.683	0					10	5	2	0	0	0	0.028476	1	10847	10847		50.025	18.07	1	113150	+		16799	29521	13696	13718	18767	18767					0.04560565054430299
HVFGFKKHLAI	11	Unmodified	_HVFGFKKHLAI_					0	0	0			REV__tr|A0A553SJ77|A0A553SJ77_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_16260PE=4SV=1	REV__tr|A0A553SJ77|A0A553SJ77_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_16260PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	432.926513671875	3	432.92403	1295.75026	1.6734	0.00072447	3.8683	0.0016747	5.5418	0.0023992	432.9256048538329	64.918	2.5849	61.925	61.446	64.031	-2.9933					130	50	4	0	0	0	0.69424	1	2545	2545		31.634	3.5528	1	231790	+		16800	29974	13697	13719	18768	18768					0.11421654693322125
HVFLQFVII	9	Unmodified	_HVFLQFVII_					0	0	0		ENST00000560715.5_1_15:77348115-77348262:-|nuORF	ENST00000560715.5_1_15:77348115-77348262:-|nuORF	ENST00000560715.5_1_15:77348115-77348262:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.3328857421875	2	558.334227	1114.6539	0.81663	0.00045595	-3.4914	-0.0019494	-2.6747	-0.0014934	558.3316314251366	90.549	1.2785	87.974	87.75	89.029	-2.575					60	24	4	0	0	0	0.53957	1	7828	7828		38.806	3.6054	1	520340			16801	13739	13698	13720	18769	18769					0.10116087133383189
HVFVDVPI	8	Unmodified	_HVFVDVPI_					0	0	0			REV__ENSG00000187772|ENST00000345080|LIN28B	REV__ENSG00000187772|ENST00000345080|LIN28B	MULTI-SECPEP	OvCa99_classI_Rep5	1	462.7754211425781	2	463.260728	924.506903	-0.034218	-1.5852E-05	-3.9161	-0.0018142	-3.9504	-0.00183	463.2587484390493	63.757	0.83488	63.757	63.1	63.935	0					40	20	3	0	0	0	0.028476	1	5779	5779		29.842	8.8946	1	765330	+		16802	22660	13699	13721	18770	18770					0.04162990248414644
HVFVDVPI	8	Unmodified	_HVFVDVPI_					0	0	0			REV__ENSG00000187772|ENST00000345080|LIN28B	REV__ENSG00000187772|ENST00000345080|LIN28B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	463.260728	924.506903	-0.074937	-3.4716E-05	-4.2414	-0.0019649	-4.3163	-0.0019996	463.25870010713305	66.807	2.08	64.126	63.334	65.414	-2.6805	0.19323	0.00033548	NaN	29.842	81	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90922	+		16803	22660	13699	13721							0.04162990248414644
HVFVDVPI	8	Unmodified	_HVFVDVPI_					0	0	0			REV__ENSG00000187772|ENST00000345080|LIN28B	REV__ENSG00000187772|ENST00000345080|LIN28B	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	463.260728	924.506903	0.76209	0.00035305	-5.2083	-0.0024128	-4.4462	-0.0020597	463.25825213827494	67.406	1.9685	63.916	63.393	65.362	-3.4902	-0.017376	-0.00056034	NaN	29.842	87	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	409060	+		16804	22660	13699	13721							0.04162990248414644
HVFVEPVQL	9	Unmodified	_HVFVEPVQL_					0	0	0		ENSG00000171206|ENST00000643721|TRIM8	ENSG00000171206|ENST00000643721|TRIM8	ENSG00000171206|ENST00000643721|TRIM8	MULTI-MSMS	OvCa9_classI_Rep2	2	534.2957763671875	2	534.297842	1066.58113	-0.71176	-0.00038029	-3.1088	-0.001661	-3.8206	-0.0020413	534.2961350435113	70.561	1.5908	67.99	67.361	68.952	-2.5707					83	30	4	0	0	0	0.24951	1	5652	5652		68.787	12.353	1	450080			16805	7182	13700	13722	18771	18771					0.050503333399547046
HVFVEPVQL	9	Unmodified	_HVFVEPVQL_					0	0	0		ENSG00000171206|ENST00000643721|TRIM8	ENSG00000171206|ENST00000643721|TRIM8	ENSG00000171206|ENST00000643721|TRIM8	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.297607421875	2	534.297842	1066.58113	-1.8795	-0.0010042	-2.598	-0.0013881	-4.4775	-0.0023923	534.2965246010859	71.506	1.6118	68.049	67.677	69.289	-3.4563					80	32	4	0	0	0	0.24951	3	5468	5456;5468;5482		68.787	1.4249	1	1880500			16806	7182	13700	13722	18772;18773;18774	18773					0.050503333399547046
HVFVLNTQGLQ	11	Unmodified	_HVFVLNTQGLQ_					0	0	0			REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	627.8875122070312	2	628.343312	1254.67207	-0.3941	-0.00024763	0.23036	0.00014474	-0.16374	-0.00010289	628.343280802648	104.13	1.0496	102.01	101.75	102.8	-2.1192					48	19	3	0	0	0	0.025853	1	9435	9435		20.947	0	1	119220	+		16807	19851	13701	13723	18775	18775					0.05492177317432834
HVFVLNTQGLQ	11	Unmodified	_HVFVLNTQGLQ_					0	0	0			REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-MATCH	OvCa9_classI_Rep2	2		2	628.343312	1254.67207	-1.7151	-0.0010776	1.3737	0.00086313	-0.34139	-0.00021451	628.3439898431586	102.59	1.1341	101.91	101.64	102.77	-0.68459	-0.082187	0.0015703	NaN	25.574	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110890	+		16808	19851	13701	13723							0.05492177317432834
HVGKFIVSTV	10	Unmodified	_HVGKFIVSTV_					0	0	0			REV__tr|A0A7D7A262|A0A7D7A262_9CLOTSpermidine/putrescineimportATP-bindingproteinPotAOS=ClostridiumintestinaleOX=36845GN=potAPE=3SV=1	REV__tr|A0A7D7A262|A0A7D7A262_9CLOTSpermidine/putrescineimportATP-bindingproteinPotAOS=ClostridiumintestinaleOX=36845GN=potAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7959594726562	2	543.818941	1085.62333	1.7724	0.00096387	-0.88986	-0.00048392	0.88254	0.00047994	543.8180258181474	107.29	0.17017	107.29	107.14	107.31	0					5	3	2	0	0	0	0.026782	1	12088	12088		54.776	12.38	1	144090	+		16809	32523	13702	13724	18776	18776					0.08394308748324875
HVGLPGGRPR	10	Unmodified	_HVGLPGGRPR_					0	0	0		ENST00000397501.5_1_8:27316032-27316239:+|nuORF	ENST00000397501.5_1_8:27316032-27316239:+|nuORF	ENST00000397501.5_1_8:27316032-27316239:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3035278320312	2	523.304324	1044.5941	-0.69596	-0.0003642	-0.72937	-0.00038168	-1.4253	-0.00074588	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.76627	1	13853	13853		23.042	0.46283	1	130240			16810	11346	13703	13725	18777	18777					0.0735820924271593
HVGPARGH	8	Unmodified	_HVGPARGH_					0	0	0			REV__ENST00000491615.5_1_13:51102044-51102324:+|nuORF	REV__ENST00000491615.5_1_13:51102044-51102324:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	415.72149658203125	2	415.722636	829.430718	-1.0163	-0.00042249	-0.68268	-0.00028381	-1.699	-0.00070629	415.72221629127785	119.3	1.3301	119.13	118.81	120.14	-0.17138					54	26	3	0	0	0	0.75991	1	11482	11482		21.702	0	1	206540	+		16811	26678	13704	13726	18778	18778					0.009180311916679784
HVGWVFFF	8	Unmodified	_HVGWVFFF_					0	0	0		ENST00000465139.6_1_15:69071450-69071543:-|nuORF	ENST00000465139.6_1_15:69071450-69071543:-|nuORF	ENST00000465139.6_1_15:69071450-69071543:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.2992553710938	2	519.763438	1037.51232	-1.1238	-0.00058411	3.4464	0.0017913	2.3226	0.0012072	519.7648076319354	71.043	1.2597	67.586	67.347	68.607	-3.4563					41	25	2	0	0	0	0.028476	1	5507	5507		16.705	0	1	97326			16812	12268	13705	13727	18779	18779					-0.004932861691031576
HVHKCVQVFGS	11	Unmodified	_HVHKCVQVFGS_					0	0	0			REV__ENST00000434735.6_1_12:109919507-109921397:+|nuORF	REV__ENST00000434735.6_1_12:109919507-109921397:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	620.8182373046875	2	620.816407	1239.61826	-1.695	-0.0010523	3.3772	0.0020966	1.6822	0.0010444	620.818422631297	38.889	1.3375	36.18	35.915	37.252	-2.7097					75	26	4	0	0	0	0.69455	1	1884	1884		31.53	5.9558	1	501820	+		16813	25759	13706	13728	18780	18780					0.008036816140474912
HVHLSGINY	9	Unmodified	_HVHLSGINY_					0	0	0		tr|A0A7D7A0P9|A0A7D7A0P9_9CLOTTIMbarrelproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10890PE=4SV=1	tr|A0A7D7A0P9|A0A7D7A0P9_9CLOTTIMbarrelproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10890PE=4SV=1	tr|A0A7D7A0P9|A0A7D7A0P9_9CLOTTIMbarrelproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10890PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.8214721679688	2	520.269616	1038.52468	3.0489	0.0015863	-0.75602	-0.00039333	2.2929	0.0011929	520.2695080704688	133.8	0.63745	132.28	132	132.64	-1.5257					33	12	4	0	0	0	0.027462	1	12887	12887		31.955	6.5047	1	44776			16814	36003	13707	13729	18781	18781					0.006957055032899007
HVHRWSYL	8	Unmodified	_HVHRWSYL_					0	0	0		sp|P16769|UNG_HCMVAUracil-DNAglycosylaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL114PE=3SV=1;sp|F5HI85|UNG_HCMVMUracil-DNAglycosylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL114PE=3SV=1	sp|P16769|UNG_HCMVAUracil-DNAglycosylaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL114PE=3SV=1	sp|P16769|UNG_HCMVAUracil-DNAglycosylaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL114PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.80078125	2	549.2856	1096.55665	1.2605	0.00069238	-1.0298	-0.00056566	0.23071	0.00012672	549.2850273567631	130.65	0.57367	130.65	130.48	131.06	0					20	11	3	0	0	0	0.028476	1	15144	15144		45.952	7.1458	1	147830			16815	32878	13708	13730	18782	18782					0.012231179770878953
HVICRVINN	9	Unmodified	_HVICRVINN_					0	0	0			REV__ENSG00000101138|ENST00000217109|CSTF1	REV__ENSG00000101138|ENST00000217109|CSTF1	MULTI-MSMS	OvCa99_classI_Rep5	1	534.2936401367188	2	534.292568	1066.57058	2.6307	0.0014056	0.47719	0.00025496	3.1079	0.0016605	534.2924469476275	94.166	1.1088	94.166	93.883	94.992	0					47	25	3	0	0	0	0.50066	1	10244	10244		42.474	1.6963	1	630770	+		16816	17475	13709	13731	18783	18783					0.03996027413859338
HVIKRQGR	8	Unmodified	_HVIKRQGR_					0	0	0		tr|A0A7D6ZRE2|A0A7D6ZRE2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12335PE=4SV=1	tr|A0A7D6ZRE2|A0A7D6ZRE2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12335PE=4SV=1	tr|A0A7D6ZRE2|A0A7D6ZRE2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12335PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.5898742675781	2	497.306867	992.599181	-0.405	-0.00020141	-2.4313	-0.0012091	-2.8363	-0.0014105	497.30618329515954	51.018	0.21418	51.018	50.863	51.078	0					6	4	2	0	0	0	0.028476	1	3908	3908		8.2313	0	1	27996			16817	35713	13710	13732	18784	18784					0.1025851310531607
HVILNASQ	8	Unmodified	_HVILNASQ_					0	0	0			REV__ENSG00000169981|ENST00000396056|ZNF35	REV__ENSG00000169981|ENST00000396056|ZNF35	MULTI-SECPEP	OvCa99_classI_Rep5	1	442.2157287597656	2	441.245609	880.476666	0.72291	0.00031898	-1.0314	-0.00045512	-0.30854	-0.00013614	441.24496337972647	67.828	0.66927	67.828	67.408	68.077	0					19	16	2	0	0	0	0.028476	1	6368	6368		30.504	1.3541	1	150270	+		16818	21504	13711	13733	18785	18785					0.031646315832290384
HVIRSSLIL	9	Unmodified	_HVIRSSLIL_					0	0	0		sp|P09719|US14_HCMVAUncharacterizedproteinHVLF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US14PE=3SV=2	sp|P09719|US14_HCMVAUncharacterizedproteinHVLF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US14PE=3SV=2	sp|P09719|US14_HCMVAUncharacterizedproteinHVLF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US14PE=3SV=2	MULTI-MSMS	OvCa99_classI_Rep5	1	519.3265380859375	2	519.326934	1036.63931	0.69387	0.00036034	1.2434	0.00064575	1.9373	0.0010061	519.3274884207567	83.272	0.89259	83.272	82.949	83.841	0					39	20	3	0	0	0	0.48324	1	8670	8670		44.117	1.7207	1	4797000			16819	32887	13712	13734	18786	18786					0.12246014985248621
HVIRVLRQS	9	Unmodified	_HVIRVLRQS_					0	0	0		ENST00000367184.2_1_1:204435983-204436325:-|nuORF	ENST00000367184.2_1_1:204435983-204436325:-|nuORF	ENST00000367184.2_1_1:204435983-204436325:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	553.8184204101562	2	554.340907	1106.66726	-1.5556	-0.00086232	1.6675	0.00092439	0.11198	6.2073E-05	554.3415203252035	37.353	0.63992	34.643	34.386	35.026	-2.7097					26	12	3	0	0	0	0.027462	1	1711	1711		21.96	2.5999	1	53290			16820	10837	13713	13735	18787	18787					0.11819337965312116
HVISTRGTK	9	Unmodified	_HVISTRGTK_					0	0	0			REV__CON__Q3MHH8	REV__CON__Q3MHH8	MULTI-MSMS	OvCa99_classI_Rep5	1	499.7911682128906	2	499.790715	997.566878	-0.93601	-0.00046781	0.87554	0.00043759	-0.060469	-3.0222E-05	499.7909711426906	26.717	0.45005	26.717	26.542	26.992	0					12	8	2	0	0	0	0.62352	1	722	722		29.15	8.6677	1	79747	+	+	16821	16206	13714	13736	18788	18788					0.06799680911660744
HVITAAPTPD	10	Unmodified	_HVITAAPTPD_					0	0	0			REV__nc|ENSG00000079308|Q9HBL0-1|TNS1	REV__nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	OvCa99_classI_Rep5	1	511.2724609375	2	511.269281	1020.52401	1.8914	0.00096699	-0.093262	-4.7682E-05	1.7981	0.00091931	511.2691656162222	128.17	1.3063	128.17	127.81	129.12	0					60	27	3	0	0	0	0.58282	1	14893	14893		44.117	0	1	268790	+		16822	17039	13715	13737	18789	18789					0.014568660635518427
HVIVESVDL	9	Unmodified	_HVIVESVDL_					0	0	0		ENST00000565686.1_1_15:76050816-76050969:+|nuORF	ENST00000565686.1_1_15:76050816-76050969:+|nuORF	ENST00000565686.1_1_15:76050816-76050969:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.781005859375	2	505.779482	1009.54441	-0.65211	-0.00032982	0.31399	0.00015881	-0.33812	-0.00017101	505.7796917442395	103.11	2.3563	100.91	100.36	102.72	-2.1994					116	42	4	0	0	0	0.29717	1	9321	9321		63.306	2.3343	1	890940			16823	13824	13716	13738	18790	18790					0.04002036723386482
HVIVQCPGGIT	11	Unmodified	_HVIVQCPGGIT_					0	0	0			REV__ENSG00000125772|ENST00000379019|GPCPD1;REV__ENST00000433031.1_1_7:57217543-57217852:-|nuORF	REV__ENSG00000125772|ENST00000379019|GPCPD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.3265991210938	2	562.300059	1122.58556	0.5674	0.00031905	-3.5018	-0.0019691	-2.9344	-0.00165	562.2981687760034	58.357	0.37803	58.357	58.194	58.572	0					14	8	2	0	0	0	0.025528	1	4944	4944		42.864	11.334	1	391830	+		16824	18743;25741	13717	13739	18791	18791					0.02917474491187022
HVKDHYIF	8	Unmodified	_HVKDHYIF_					0	0	0		ENSG00000160349|ENST00000371781|LCN1	ENSG00000160349|ENST00000371781|LCN1	ENSG00000160349|ENST00000371781|LCN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7528686523438	2	529.774534	1057.53451	1.1433	0.00060567	3.9777	0.0021073	5.121	0.002713	529.7765264377168	98.331	0.25923	98.331	98.247	98.506	0					7	5	2	0	0	0	0.028476	1	10847	10847		33.516	0	1	67183			16825	6060	13718	13740	18792	18792					0.00804893508643545
HVKISDLGL	9	Unmodified	_HVKISDLGL_					0	0	0		nc|ENSG00000185483|Q01973-2|ROR1;XAF1-ROR1|2|fusion;XAF1-ROR1|1|fusion;ENSG00000185483|ENST00000371079|ROR1	nc|ENSG00000185483|Q01973-2|ROR1	nc|ENSG00000185483|Q01973-2|ROR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.7809753417969	2	491.290017	980.565481	0.16298	8.0072E-05	-1.0193	-0.00050076	-0.85629	-0.00042069	491.2886382066147	56.226	1.98	52.932	52.412	54.392	-3.2944					72	38	3	0	0	0	0.027462	1	3557	3557		29.15	14.285	1	141960			16826	8257	13719	13741	18793	18793					0.07442046822893644
HVKKKKALL	9	Unmodified	_HVKKKKALL_					0	0	0		nc|ENSG00000197893|Q86VF7-4|NRAP;nc|ENSG00000197893|Q86VF7-3|NRAP;ENSG00000197893|ENST00000359988|NRAP;nc|ENSG00000197893|Q86VF7-2|NRAP	nc|ENSG00000197893|Q86VF7-4|NRAP	nc|ENSG00000197893|Q86VF7-4|NRAP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.7626342773438	2	532.868769	1063.72298	-2.1844	-0.001164	1.9694	0.0010494	-0.21493	-0.00011453	532.8697662609554	118.53	0.99709	117.18	116.79	117.78	-1.3444					28	18	2	0	0	0	0.027462	1	11146	11146		31.955	19.748	1	28895			16827	8761	13720	13742	18794	18794					0.19367171152930496
HVKKSARS	8	Unmodified	_HVKKSARS_					0	0	0			REV__ENSG00000052126|ENST00000429027|PLEKHA5	REV__ENSG00000052126|ENST00000429027|PLEKHA5	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.7734680175781	2	456.772326	911.530098	1.7609	0.00080431	-1.6048	-0.00073301	0.1561	7.1303E-05	456.771431034772	138.57	1.0127	137.04	136.79	137.8	-1.5284					33	20	2	0	0	0	0.74971	1	13500	13500		26.796	1.3459	1	54510	+		16828	16690	13721	13743	18795	18795					0.07079429085752054
HVLEGKLTL	9	Unmodified	_HVLEGKLTL_					0	0	0			REV__tr|A0A553SP90|A0A553SP90_NIACIDihydroorotatedehydrogenaseB(NAD(+)),electrontransfersubunitOS=NialliacirculansOX=1397GN=pyrKPE=3SV=1	REV__tr|A0A553SP90|A0A553SP90_NIACIDihydroorotatedehydrogenaseB(NAD(+)),electrontransfersubunitOS=NialliacirculansOX=1397GN=pyrKPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	505.306884765625	2	505.305667	1008.59678	0.21485	0.00010856	2.1641	0.0010935	2.3789	0.0012021	505.30658540271475	114.54	1.8064	114.54	114.2	116	0					71	38	3	0	0	0	0.37135	2	13089	13089;13114		54.776	11.371	1	1293700	+		16829	30513	13722	13744	18796;18797	18796					0.09282619856992369
HVLHSRSW	8	Unmodified	_HVLHSRSW_					0	0	0		ENST00000367941.6_1_6:132824643-132824700:-|nuORF	ENST00000367941.6_1_6:132824643-132824700:-|nuORF	ENST00000367941.6_1_6:132824643-132824700:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	511.270263671875	2	511.26995	1020.52535	1.8914	0.00096699	-1.4012	-0.00071638	0.49017	0.00025061	511.2691656162222	128.17	1.3063	128.17	127.81	129.12	0					60	27	3	0	0	0	0.67745	1	14838	14838		47.916	1.1492	1	268790			16830	10857	13723	13745	18798	18798					0.015905449429851615
HVLIVTKKHY	10	Unmodified	_HVLIVTKKHY_					0	0	0		tr|A0A553SG19|A0A553SG19_NIACIHITfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09935PE=4SV=1	tr|A0A553SG19|A0A553SG19_NIACIHITfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09935PE=4SV=1	tr|A0A553SG19|A0A553SG19_NIACIHITfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09935PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.3715209960938	2	619.374415	1236.73428	-6.2744	-0.0038862	1.979	0.0012257	-4.2954	-0.0026604	619.3755572557021	159.71	1.0789	158.1	157.75	158.83	-1.6101					53	24	3	0	0	0	0.81992	1	15772	15772		16.473	0.83134	1	88655			16831	33106	13724	13746	18799	18799					0.1253794845642915
HVLPDGIED	9	Unmodified	_HVLPDGIED_					0	0	0			REV__tr|A0A553SNX3|A0A553SNX3_NIACIChemotaxisproteinCheAOS=NialliacirculansOX=1397GN=CEQ21_25390PE=4SV=1	REV__tr|A0A553SNX3|A0A553SNX3_NIACIChemotaxisproteinCheAOS=NialliacirculansOX=1397GN=CEQ21_25390PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.7436218261719	2	497.745639	993.476725	-1.7249	-0.00085854	1.4239	0.00070874	-0.30096	-0.0001498	497.74600821151574	126.98	1.2008	125.55	125.24	126.45	-1.4357					49	23	3	0	0	0	0.61208	1	12122	12122		30.504	1.3541	1	92115	+		16832	30470	13725	13747	18800	18800					-0.02027413207429163
HVLSRFKVL	9	Unmodified	_HVLSRFKVL_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.243408203125	2	549.842751	1097.67095	0.82794	0.00045524	-0.060251	-3.3129E-05	0.76769	0.00042211	549.842561703857	132.56	0.67039	132.56	132.32	132.99	0					28	13	3	0	0	0	0.027417	1	15378	15378		45.952	0	1	115870	+		16833	17252	13726	13748	18801	18801					0.1260200773917859
HVLTMAPLL	9	Unmodified	_HVLTMAPLL_					0	0	0			REV__ENST00000425974.5_1_2:13142655-13142700:-|nuORF	REV__ENST00000425974.5_1_2:13142655-13142700:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.7646179199219	2	497.791338	993.568123	-0.38839	-0.00019334	3.9829	0.0019826	3.5945	0.0017893	497.79301136839825	29.859	0.29988	29.859	29.686	29.986	0					9	5	2	0	0	0	0.027462	1	1090	1090		19.36	10.538	1	63455	+		16834	25659	13727	13749	18802	18802					0.07108178956207212
HVLTWKRLWQF	11	Unmodified	_HVLTWKRLWQF_					0	0	0		ENST00000295851.9_2_2:204281657-204292010:+|nuORF;ENST00000464761.1_1_2:204281657-204301507:+|nuORF	ENST00000295851.9_2_2:204281657-204292010:+|nuORF	ENST00000295851.9_2_2:204281657-204292010:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.7833557128906	3	505.285739	1512.83539	-1.15	-0.00058108	-2.1858	-0.0011045	-3.3358	-0.0016855	505.2848584298215	44.065	0.43874	44.065	43.866	44.305	0					12	9	2	0	0	0	0.026344	1	2951	2951		14.086	4.8742	1	756380			16835	10125	13728	13750	18803	18803					0.09948400159123594
HVMLFTQTK	9	Unmodified	_HVMLFTQTK_					0	0	0		nc|ENSG00000124228|Q96GQ7|DDX27;DDX27|p.E703Dfs*18|1|0.04|ENSG00000124228|chr20:49242105-49242106|-/TTTGCAGCCCGTGGCTTCCTGTGTT|frameshift_variant;ENSG00000124228|ENST00000618172|DDX27;ENST00000484427.5_1_20:47851464-47851626:+|nuORF	nc|ENSG00000124228|Q96GQ7|DDX27	nc|ENSG00000124228|Q96GQ7|DDX27	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.769775390625	2	552.797152	1103.57975	2.4996	0.0013818	2.0558	0.0011365	4.5555	0.0025182	553.3005608997929	75.793	0.3554	75.793	75.68	76.036	0					19	8	3	0	0	0	0.027462	1	7594	7594		21.96	0	1	768970			16836	14999	13729	13751	18804	18804					0.0321037597952909
HVMNGKSS	8	Unmodified	_HVMNGKSS_					0	0	0			REV__ENST00000485213.1_1_X:48434327-48434552:+|nuORF	REV__ENST00000485213.1_1_X:48434327-48434552:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	429.71435546875	2	430.20817	858.401786	-0.82765	-0.00035606	1.9713	0.00084809	1.1437	0.00049203	430.20848324348117	27.517	0.20104	27.517	27.44	27.641	0					5	3	2	0	0	0	0.028476	1	823	823		24.203	14.018	1	9655.6	+		16837	26560	13730	13752	18805	18805					-0.03307874219638052
HVMNLLRE	8	Unmodified	_HVMNLLRE_					0	0	0		DCAF6-PBX1|6|fusion;DCAF6-PBX1|3|fusion;DCAF6-PBX1|5|fusion;DCAF6-PBX1|4|fusion;DCAF6-PBX1|2|fusion;DCAF6-PBX1|1|fusion;ENST00000538998.1_1_9:128606084-128725334:+|nuORF;NSMCE2-PBX3|1|fusion;ENST00000478678.5_1_6:32154995-32157692:-|nuORF;nc|ENSG00000167081|P40426-2|PBX3;nc|ENSG00000167081|P40426-5|PBX3;ENSG00000204304|ENST00000375050|PBX2;ENSG00000167081|ENST00000373489|PBX3;nc|ENSG00000185630|P40424-2|PBX1;nc|ENSG00000185630|P40424-3|PBX1;ENSG00000185630|ENST00000420696|PBX1	DCAF6-PBX1|6|fusion;NSMCE2-PBX3|1|fusion;ENST00000478678.5_1_6:32154995-32157692:-|nuORF;nc|ENSG00000185630|P40424-2|PBX1	ENST00000478678.5_1_6:32154995-32157692:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	506.2736511230469	2	506.273844	1010.53313	-1.4516	-0.00073491	1.3167	0.00066662	-0.13488	-6.8288E-05	506.27432077140526	54.053	1.5966	51.239	50.875	52.472	-2.8139					77	31	5	0	0	0	0.71369	1	3694	3694		40.573	0	1	346790			16838	711;15441;6750;8271	13731	13753	18806	18806					0.028289361482620734
HVMRAKKAT	9	Unmodified	_HVMRAKKAT_					0	0	0		ENSG00000174373|ENST00000680220|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.3026123046875	2	521.302936	1040.59132	-1.7904	-0.00093334	-1.6808	-0.00087621	-3.4712	-0.0018096	521.3020127691736	50.387	1.4365	47.245	46.82	48.256	-3.1416					66	27	3	0	0	0	0.61208	1	2895	2895		30.504	1.3541	1	883080			16839	7460	13732	13754	18807	18807					0.07264617793521211
HVNDRGQVF	9	Unmodified	_HVNDRGQVF_					0	0	0			REV__RAD51AP2|p.N321Kfs*26|1|0.05|ENSG00000214842|chr2:17517453-17517454|-/CT|frameshift_variant	REV__RAD51AP2|p.N321Kfs*26|1|0.05|ENSG00000214842|chr2:17517453-17517454|-/CT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.2676391601562	2	536.270147	1070.52574	1.0537	0.00056505	3.6547	0.0019599	4.7084	0.002525	536.2720455121356	156.17	1.2577	156.17	155.99	157.25	0					31	24	2	0	0	0	0.027462	1	18343	18343		16.473	0	1	46448	+		16840	23300	13733	13755	18808	18808					-0.006700801278157087
HVNPLVVE	8	Unmodified	_HVNPLVVE_					0	0	0			REV__ENSG00000156299|ENST00000541036|TIAM1	REV__ENSG00000156299|ENST00000541036|TIAM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	454.2718505859375	2	453.75581	905.497067	-0.6977	-0.00031658	-3.9195	-0.0017785	-4.6172	-0.0020951	453.7541967044602	27.265	0.74809	27.265	27.043	27.791	0					33	14	4	0	0	0	0.028476	1	769	769		3.6843	0	1	535690	+		16841	20472	13734	13756	18809	18809					0.040538022430382625
HVNRPVIIK	9	Unmodified	_HVNRPVIIK_					0	0	0			REV__tr|A0A553SPG7|A0A553SPG7_NIACIAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_26175PE=3SV=1	REV__tr|A0A553SPG7|A0A553SPG7_NIACIAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_26175PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.7892456054688	2	538.340375	1074.6662	-2.823	-0.0015198	1.8808	0.0010125	-0.94228	-0.00050726	538.341300560716	49.295	0.41333	46.154	45.99	46.403	-3.1416					11	7	2	0	0	0	0.027462	1	2764	2764		21.96	0	1	22913	+		16842	30535	13735	13757	18810	18810					0.13185123596394988
HVPLLIVLDS	10	Unmodified	_HVPLLIVLDS_					0	0	0		LRRK2|p.R1462Qfs*6|1|0.1|ENSG00000188906|chr12:40310497-40310498|CG/-|frameshift_variant;ENSG00000188906|ENST00000298910|LRRK2	LRRK2|p.R1462Qfs*6|1|0.1|ENSG00000188906|chr12:40310497-40310498|CG/-|frameshift_variant	LRRK2|p.R1462Qfs*6|1|0.1|ENSG00000188906|chr12:40310497-40310498|CG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	553.3306884765625	2	553.334424	1104.6543	-2.8766	-0.0015917	-0.88706	-0.00049084	-3.7637	-0.0020826	553.3337794849177	152.41	1.17	152.18	151.83	153	-0.22696					55	23	3	0	0	0	0.81992	1	15507	15507		16.473	0	1	86016			16843	8515	13736	13758	18811	18811					0.10615462062560255
HVPLRERR	8	Unmodified	_HVPLRERR_					0	0	0		nc|ENSG00000159214|Q8N4L8-2|CCDC24;ENSG00000159214|ENST00000372318|CCDC24;ENST00000485811.5_1_1:44457505-44457763:+|nuORF	nc|ENSG00000159214|Q8N4L8-2|CCDC24	nc|ENSG00000159214|Q8N4L8-2|CCDC24	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.3099975585938	2	531.817599	1061.62064	-0.31678	-0.00016847	2.2164	0.0011787	1.8997	0.0010103	531.8187353305599	53.119	0.39095	53.119	52.956	53.347	0					12	8	2	0	0	0	0.028476	1	4184	4184		17.365	0	1	470190			16844	5996	13737	13759	18812	18812					0.09229898134026371
HVPLRERR	8	Unmodified	_HVPLRERR_					0	0	0		nc|ENSG00000159214|Q8N4L8-2|CCDC24;ENSG00000159214|ENST00000372318|CCDC24;ENST00000485811.5_1_1:44457505-44457763:+|nuORF	nc|ENSG00000159214|Q8N4L8-2|CCDC24	nc|ENSG00000159214|Q8N4L8-2|CCDC24	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8187866210938	2	531.817599	1061.62064	0.089047	4.7357E-05	-1.2182	-0.00064783	-1.1291	-0.00060048	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.75723	1	13637	13637		23.042	1.0826	1	263230			16845	5996	13737	13759	18813	18813					0.09229898134026371
HVPLTNDTK	9	Unmodified	_HVPLTNDTK_					0	0	0		tr|A0A553SF75|A0A553SF75_NIACID-3-phosphoglyceratedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_08345PE=3SV=1	tr|A0A553SF75|A0A553SF75_NIACID-3-phosphoglyceratedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_08345PE=3SV=1	tr|A0A553SF75|A0A553SF75_NIACID-3-phosphoglyceratedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_08345PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	512.7759399414062	2	512.774731	1023.53491	-0.32862	-0.00016851	-0.66415	-0.00034056	-0.99277	-0.00050907	512.7742248772421	41.139	0.97014	41.139	40.754	41.724	0					31	21	2	0	0	0	0.50149	1	2551	2551		42.396	1.8235	1	425920			16846	33001	13738	13760	18814	18814					0.02408268437852712
HVPRAVFV	8	Unmodified	_HVPRAVFV_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;TUBA1B|p.G111Afs*71|1|0.21|ENSG00000123416|chr12:49129285-49129285|C/-|frameshift_variant;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENST00000550254.1_1_12:49580073-49582762:-|nuORF;ENST00000475683.1_1_2:220116706-220118580:-|nuORF;ENST00000551324.5_1_12:49523262-49525083:-|nuORF;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;TUBA1A|p.R264Pfs*25|1|0.06|ENSG00000167552|chr12:49185575-49185575|C/-|frameshift_variant;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000167552|ENST00000301071|TUBA1A	MULTI-MSMS	OvCa99_classI_Rep5	1	462.7756042480469	2	462.774337	923.534121	-1.0369	-0.00047986	0.66975	0.00030994	-0.36718	-0.00016992	462.77449259712506	63.965	1.7789	63.965	63.648	65.426	0					103	43	3	0	0	0	0.7043	1	5808	5808		42.474	7.2737	1	4874800			16847	3593;6805;6806	13739	13761	18815	18815					0.06929518579465821
HVQDTIHY	8	Unmodified	_HVQDTIHY_					0	0	0			REV__B3GNT2|p.F353Lfs*19|1|0.04|ENSG00000170340|chr2:62223277-62223278|-/TG|frameshift_variant	REV__B3GNT2|p.F353Lfs*19|1|0.04|ENSG00000170340|chr2:62223277-62223278|-/TG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.3330993652344	2	506.745973	1011.47739	-0.18016	-9.1294E-05	0.13963	7.0758E-05	-0.040526	-2.0536E-05	506.7459972862329	56.593	1.2158	53.298	52.819	54.035	-3.2944					61	23	4	0	0	0	0.028476	1	3712	3712		42.396	10.817	1	157150	+		16848	15691	13740	13762	18816	18816					-0.02788573767725211
HVQGRIFR	8	Unmodified	_HVQGRIFR_					0	0	0		nc|ENSG00000240303|Q709F0-3|ACAD11;nc|ENSG00000240303|Q709F0-2|ACAD11;ENSG00000240303|ENST00000264990|ACAD11;ENST00000469042.5_1_3:132298334-132378619:-|nuORF;ACAD11|p.I219Tfs*3|1|0.23|ENSG00000240303|chr3:132639522-132639538|TCTGAAATCTCCATGAA/-|frameshift_variant;ENST00000471702.2_2_3:132339980-132400782:-|nuORF	nc|ENSG00000240303|Q709F0-3|ACAD11	nc|ENSG00000240303|Q709F0-3|ACAD11	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.3323974609375	2	506.793592	1011.57263	-0.33391	-0.00016922	-2.052	-0.00104	-2.3859	-0.0012092	506.79267936201256	57.659	0.96338	54.314	54.035	54.999	-3.3449					47	18	4	0	0	0	0.028476	1	3737	3737		33.516	14.156	1	159180			16849	9337	13741	13763	18817	18817					0.06730824213980213
HVQLILKSK	9	Unmodified	_HVQLILKSK_					0	0	0			REV__tr|A0A7D6VNM5|A0A7D6VNM5_9CLOTDNApolymeraseIOS=ClostridiumintestinaleOX=36845GN=polAPE=3SV=1	REV__tr|A0A7D6VNM5|A0A7D6VNM5_9CLOTDNApolymeraseIOS=ClostridiumintestinaleOX=36845GN=polAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.3401489257812	2	533.342584	1064.67061	-6.1908	-0.0033018	1.9226	0.0010254	-4.2682	-0.0022764	533.3435201452669	156.94	1.5192	155.39	155.04	156.56	-1.545					135	41	5	0	0	0	0.67509	1	15509	15509		23.042	4.7181	1	1621700	+		16850	31194	13742	13764	18818	18818					0.1408658801931324
HVQRQLPRQ	9	Unmodified	_HVQRQLPRQ_					0	0	0			REV__ENSG00000162745|ENST00000294794|OLFML2B	REV__ENSG00000162745|ENST00000294794|OLFML2B	MULTI-MSMS	OvCa9_classI_Rep4_	4	581.3350219726562	2	581.333613	1160.65267	-0.53818	-0.00031286	-0.090502	-5.2612E-05	-0.62869	-0.00036548	581.3334660397742	47.599	1.1625	44.491	44.185	45.348	-3.1077					85	22	5	0	0	0	0.59983	1	2582	2582		31.955	4.0726	1	611370	+		16851	20775	13743	13765	18819	18819					0.0787726581716015
HVQRQLPRQ	9	Unmodified	_HVQRQLPRQ_					0	0	0			REV__ENSG00000162745|ENST00000294794|OLFML2B	REV__ENSG00000162745|ENST00000294794|OLFML2B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	581.333613	1160.65267	-0.84009	-0.00048837	0.41666	0.00024222	-0.42343	-0.00024615	581.3337344411791	47.259	1.0891	44.549	44.142	45.231	-2.7097	0.028792	0.00035973	NaN	31.955	51	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108580	+		16852	20775	13743	13765							0.0787726581716015
HVQRQLPRQ	9	Unmodified	_HVQRQLPRQ_					0	0	0			REV__ENSG00000162745|ENST00000294794|OLFML2B	REV__ENSG00000162745|ENST00000294794|OLFML2B	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	581.333613	1160.65267	-0.53818	-0.00031286	-0.090502	-5.2612E-05	-0.62869	-0.00036548	581.3334660397742	47.599	1.1625	44.491	44.185	45.348	-3.1077	-0.028792	-0.00022993	NaN	31.955	85	22	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	611370	+		16853	20775	13743	13765							0.0787726581716015
HVQTLLTPH	9	Unmodified	_HVQTLLTPH_					0	0	0			REV__ENST00000278071.6_1_10:106073096-106073477:-|nuORF	REV__ENST00000278071.6_1_10:106073096-106073477:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.2933349609375	2	523.293091	1044.57163	0.34424	0.00018014	-1.3569	-0.00071007	-1.0127	-0.00052993	523.292611985913	34.411	1.6477	31.622	30.953	32.601	-2.7881					71	32	4	0	0	0	0.50149	1	1018	1018		42.396	1.8235	1	71254	+		16854	24106	13744	13766	18820	18820					0.05112565054423612
HVRCLLLA	8	Unmodified	_HVRCLLLA_					0	0	0			REV__ENST00000370331.5_1_1:93169133-93170263:-|nuORF	REV__ENST00000370331.5_1_1:93169133-93170263:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	462.77545166015625	2	462.776022	923.537492	-1.0369	-0.00047986	-2.9722	-0.0013755	-4.0091	-0.0018553	462.77449259712506	63.965	1.7789	63.965	63.648	65.426	0					103	43	3	0	0	0	0.68312	1	5846	5846		46.766	6.1938	1	4874800	+		16855	24958	13745	13767	18821	18821					0.0726644536182448
HVRIRFLGQQ	10	Unmodified	_HVRIRFLGQQ_					0	0	0			REV__ENSG00000261609|ENST00000648994|GAN	REV__ENSG00000261609|ENST00000648994|GAN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	419.19903564453125	3	418.579034	1252.71527	-2.3326	-0.0009764	1.0166	0.00042553	-1.316	-0.00055087	418.57934526925976	49.775	1.2482	46.633	46.403	47.651	-3.1416					64	23	5	0	0	0	0.026803	1	2863	2863		32.751	0	1	230950	+		16856	23569	13746	13768	18822	18822					0.09902411885354923
HVRRRRRLYF	10	Unmodified	_HVRRRRRLYF_					0	0	0			REV__ENSG00000112996|ENST00000507110|MRPS30	REV__ENSG00000112996|ENST00000507110|MRPS30	MULTI-MSMS	OvCa9_classI_Rep3	3	486.9588317871094	3	486.96036	1457.85925	-7.2825	-0.0035463	4.3524	0.0021194	-2.9301	-0.0014268	486.9623381995862	161.08	3.4384	159.71	158.52	161.96	-1.3692					219	70	4	0	0	0	0.92313	1	14120	14120		4.3388	0.71975	1	133400	+		16857	18132	13747	13769	18823	18823					0.1486367843615426
HVRVGPGTL	9	Unmodified	_HVRVGPGTL_					0	0	0			REV__ENSG00000187045|ENST00000676104|TMPRSS6	REV__ENSG00000187045|ENST00000676104|TMPRSS6	MULTI-SECPEP	OvCa99_classI_Rep5	1	468.7406921386719	2	468.274701	934.534849	-0.79378	-0.00037171	0.82947	0.00038842	0.035685	1.671E-05	468.2758396103527	66.002	0.27019	66.002	65.904	66.174	0					9	6	2	0	0	0	0.027462	1	6098	6098		26.693	6.2111	1	237610	+		16858	22628	13748	13770	18824	18824					0.06496313228524286
HVSDLEYRI	9	Unmodified	_HVSDLEYRI_					0	0	0		KANSL1|p.Q968Sfs*46|1|0.43|ENSG00000120071|chr17:46032235-46032235|G/-|frameshift_variant;ENSG00000120071|ENST00000432791|KANSL1	KANSL1|p.Q968Sfs*46|1|0.43|ENSG00000120071|chr17:46032235-46032235|G/-|frameshift_variant	KANSL1|p.Q968Sfs*46|1|0.43|ENSG00000120071|chr17:46032235-46032235|G/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	566.2933959960938	2	566.293288	1130.57202	0.33951	0.00019226	-0.35416	-0.00020056	-0.014646	-8.2937E-06	566.2928300477656	70.881	1.5885	70.881	70.328	71.916	0					61	39	4	0	0	0	0.1944	1	6824	6824		77.318	8.5308	1	1956200			16859	3416	13749	13771	18825	18825					0.011959399836086959
HVSGERRLDI	10	Unmodified	_HVSGERRLDI_					0	0	0		nc|ENSG00000130396|P55196-2|AFDN;nc|ENSG00000130396|P55196-6|AFDN;nc|ENSG00000130396|P55196-3|AFDN;nc|ENSG00000130396|P55196-1|AFDN;nc|ENSG00000130396|P55196|AFDN;ENSG00000130396|ENST00000683244|AFDN;nc|ENSG00000130396|P55196-5|AFDN	nc|ENSG00000130396|P55196-2|AFDN	nc|ENSG00000130396|P55196-2|AFDN	MULTI-MSMS	OvCa9_classI_Rep2	2	591.3225708007812	2	591.322911	1180.63127	0.49894	0.00029503	-0.57199	-0.00033823	-0.073054	-4.3198E-05	591.3225047391371	42.256	1.1351	39.547	39.275	40.41	-2.7097					60	22	4	0	0	0	0.75313	1	2287	2287		24.519	2.5593	1	307350			16860	15012	13750	13772	18826	18826					0.048178359978237495
HVSHLRTHE	9	Unmodified	_HVSHLRTHE_					0	0	0			REV__ENSG00000158321|ENST00000342771|AUTS2	REV__ENSG00000158321|ENST00000342771|AUTS2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.2687377929688	2	558.288871	1114.56319	-0.19187	-0.00010712	-1.851	-0.0010334	-2.0428	-0.0011405	558.2887161966732	42.401	0.7641	39.421	39.116	39.88	-2.9804					25	14	3	0	0	0	0.027462	1	1983	1983		29.15	1.2673	1	22351	+		16861	20564	13751	13773	18827	18827					0.010490111377976064
HVSKAVLI	8	Unmodified	_HVSKAVLI_					0	0	0		ENSG00000100726|ENST00000262319|TELO2	ENSG00000100726|ENST00000262319|TELO2	ENSG00000100726|ENST00000262319|TELO2	MULTI-MSMS	OvCa99_classI_Rep5	1	433.77752685546875	2	433.776545	865.538538	0.32865	0.00014256	-0.098838	-4.2874E-05	0.22981	9.9687E-05	433.7764030288957	52.399	1.6913	52.399	52.083	53.774	0					64	38	2	0	0	0	0.61436	1	4093	4093		60.972	5.4677	1	1907000			16862	2099	13752	13774	18828	18828					0.10038983002368695
HVSLVQLTL	9	Unmodified	_HVSLVQLTL_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-MSMS	OvCa99_classI_Rep5	1	505.30712890625	2	505.305667	1008.59678	0.21485	0.00010856	2.1641	0.0010935	2.3789	0.0012021	505.30658540271475	114.54	1.8064	114.54	114.2	116	0					71	38	3	0	0	0	0.12515	1	13067	13067		90.37	5.4543	1	1293700			16863	4156	13753	13775	18829	18829					0.09282619856992369
HVSTVKLLL	9	Unmodified	_HVSTVKLLL_					0	0	0		nc|ENSG00000119509|Q9Y283-2|INVS;ENSG00000119509|ENST00000262457|INVS	nc|ENSG00000119509|Q9Y283-2|INVS	nc|ENSG00000119509|Q9Y283-2|INVS	MULTI-MSMS	OvCa99_classI_Rep5	1	505.32708740234375	2	505.32386	1008.63317	2.0767	0.0010494	0.22717	0.00011479	2.3039	0.0011642	505.3237770395722	82.228	1.1833	82.228	81.895	83.078	0					73	27	4	0	0	0	0.094616	1	8504	8504		98.629	41.908	1	2704800			16864	3367	13754	13776	18830	18830					0.12919496753715976
HVSVCLRP	8	Carbamidomethyl (C)	_HVSVC(Carbamidomethyl (C))LRP_	HVSVC(1)LRP		HVSVC(41)LRP		0	1	0		ENST00000233813.4_1_2:217538912-217539035:-|nuORF	ENST00000233813.4_1_2:217538912-217539035:-|nuORF	ENST00000233813.4_1_2:217538912-217539035:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	484.26055908203125	2	484.260736	966.50692	-0.67418	-0.00032648	0.80013	0.00038747	0.12595	6.0993E-05	484.2609898591179	36.231	0.54785	36.231	35.984	36.532	0					25	11	3	0	0	0	0.71369	1	1896	1896		40.573	8.6178	1	520540			16865	9732	13755	13777	18831	18831	98				0.022326669767835483
HVTFVDGYKE	10	Unmodified	_HVTFVDGYKE_					0	0	0			REV__nc|ENSG00000197408|P20813-2|CYP2B6	REV__nc|ENSG00000197408|P20813-2|CYP2B6	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.3258056640625	2	597.793121	1193.57169	1.5697	0.00093833	-0.86227	-0.00051546	0.70739	0.00042287	598.2918267017337	119.15	0.37975	119.15	118.81	119.19	0					9	7	2	0	0	0	0.026734	1	13646	13646		47.657	20.61	1	50320	+		16866	22919	13756	13778	18832	18832					-0.01735479736248635
HVTTQGVE	8	Unmodified	_HVTTQGVE_					0	0	0		nc|ENSG00000133103|Q9Y2V7-2|COG6;ENSG00000133103|ENST00000455146|COG6	nc|ENSG00000133103|Q9Y2V7-2|COG6	nc|ENSG00000133103|Q9Y2V7-2|COG6	MULTI-MSMS	OvCa99_classI_Rep5	1	435.7193603515625	2	435.719424	869.424296	3.2494	0.0014158	-3.9829	-0.0017354	-0.73348	-0.00031959	435.7176844785988	75.581	2.3802	75.581	75.292	77.672	0					162	58	5	0	0	0	0.62934	2	7565	7565;7595		57.811	5.3247	1	26670000			16867	4197	13757	13779	18833;18834	18833					-0.015639515503721668
HVVALNII	8	Unmodified	_HVVALNII_					0	0	0			REV__ENSG00000205496|ENST00000380371|OR51A2	REV__ENSG00000205496|ENST00000380371|OR51A2	MULTI-MSMS	OvCa99_classI_Rep5	1	439.77789306640625	2	439.776545	877.538538	3.7935	0.0016683	-0.7849	-0.00034518	3.0086	0.0013231	439.77603925402576	94.179	0.63724	94.179	93.923	94.56	0					35	14	4	0	0	0	0.63104	1	10262	10262		57.453	10.686	1	1594500	+		16868	23219	13758	13780	18835	18835					0.09486983002375382
HVVGFLNID	9	Unmodified	_HVVGFLNID_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000526423.1_1_11:46700589-46702208:-|nuORF	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3230895996094	2	507.274367	1012.53418	-0.39594	-0.00020085	-3.655	-0.0018541	-4.051	-0.002055	507.27241848394385	48.54	0.51855	48.54	48.332	48.851	0					26	11	3	0	0	0	0.027462	1	3560	3560		23.042	0	1	410190			16869	7526	13759	13781	18836	18836					0.028414737887942465
HVVINLDR	8	Unmodified	_HVVINLDR_					0	0	0			REV__nc|ENSG00000237515|B4DS77-2|SHISA9	REV__nc|ENSG00000237515|B4DS77-2|SHISA9	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.79254150390625	2	483.279983	964.545414	1.1288	0.00054551	-1.9297	-0.00093259	-0.80095	-0.00038708	483.27920550247404	155.22	0.54808	155.22	154.83	155.38	0					15	10	2	0	0	0	0.028476	1	18160	18160		30.504	20.319	1	33934	+		16870	23421	13760	13782	18837	18837					0.06172295882947765
HVVLDRHLVT	10	Unmodified	_HVVLDRHLVT_					0	0	0		ENST00000533960.1_1_11:770991-771360:-|nuORF;ENST00000530209.5_1_11:770899-772585:-|nuORF;ENST00000534603.5_1_11:770899-773566:-|nuORF;nc|ENSG00000177225|Q8NB37-3|GATD1;ENSG00000177225|ENST00000319863|GATD1	ENST00000533960.1_1_11:770991-771360:-|nuORF	ENST00000533960.1_1_11:770991-771360:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	594.844970703125	2	594.846022	1187.67749	-0.34669	-0.00020623	-0.6608	-0.00039307	-1.0075	-0.0005993	594.8455284822322	78.84	1.3216	77.1	76.807	78.128	-1.7398					73	25	4	0	0	0	0.6104	1	6611	6611		40.778	0	1	277320			16871	7668	13761	13783	18838	18838					0.09115900899882945
HVVLDVKKK	9	Unmodified	_HVVLDVKKK_					0	0	0			REV__nc|ENSG00000077235|Q12789-3|GTF3C1	REV__nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.3406982421875	2	533.342584	1064.67061	-6.1908	-0.0033018	1.9226	0.0010254	-4.2682	-0.0022764	533.3435201452669	156.94	1.5192	155.39	155.04	156.56	-1.545					135	41	5	0	0	0	0.64427	1	15489	15489		26.693	3.6504	1	1621700	+		16872	17006	13762	13784	18839	18839					0.1408658801931324
HVVLSKRVAW	10	Unmodified	_HVVLSKRVAW_					0	0	0			REV__ENST00000526094.5_1_17:42295651-42295777:-|nuORF	REV__ENST00000526094.5_1_17:42295651-42295777:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	597.856201171875	2	597.858932	1193.70331	-1.9041	-0.0011384	-2.5033	-0.0014966	-4.4074	-0.002635	597.8573316932594	144.83	3.9651	143.86	141.71	145.68	-0.97301					192	79	4	0	0	0	0.73378	1	12135	12135		26.693	1.1189	1	187110	+		16873	27125	13763	13785	18840	18840					0.11420795142180395
HVVLVTRGRTT	11	Unmodified	_HVVLVTRGRTT_					0	0	0		ENSG00000099904|ENST00000334554|ZDHHC8;nc|ENSG00000099904|Q9ULC8-3|ZDHHC8	ENSG00000099904|ENST00000334554|ZDHHC8	ENSG00000099904|ENST00000334554|ZDHHC8	MULTI-MSMS	OvCa9_classI_Rep2	2	619.86865234375	2	619.870028	1237.7255	-3.8587	-0.0023919	2.9348	0.0018192	-0.92393	-0.00057272	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.72485	1	15381	15381		17.468	2.1349	1	492670			16874	1986	13764	13786	18841	18841					0.11614974819917734
HVVVVRGTK	9	Unmodified	_HVVVVRGTK_					0	0	0			REV__NHLRC1|p.R150Vfs*82|1|0.42|ENSG00000187566|chr6:18122159-18122159|G/-|frameshift_variant	REV__NHLRC1|p.R150Vfs*82|1|0.42|ENSG00000187566|chr6:18122159-18122159|G/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.9500427246094	2	497.811451	993.608348	2.3679	0.0011788	-1.6303	-0.00081156	0.73761	0.00036719	497.8104076847397	89.112	0.6729	89.112	88.843	89.516	0					25	16	2	0	0	0	0.027462	1	9491	9491		24.203	0	1	528540	+		16875	22647	13765	13787	18842	18842					0.11128861671011236
HVYSGKDLI	9	Unmodified	_HVYSGKDLI_					0	0	0		DDX21|p.V637*|1|0.26|ENSG00000165732|chr10:68978848-68978848|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21;DDX21|p.Q452Pfs*6|1|0.1|ENSG00000165732|chr10:68970317-68970326|CCAGGAGCTG/-|frameshift_variant	DDX21|p.V637*|1|0.26|ENSG00000165732|chr10:68978848-68978848|G/-|frameshift_variant	DDX21|p.V637*|1|0.26|ENSG00000165732|chr10:68978848-68978848|G/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	516.2810668945312	2	516.279649	1030.54475	-0.31179	-0.00016097	-1.09	-0.00056272	-1.4017	-0.00072369	516.2787227413498	60.929	0.89648	60.929	60.646	61.542	0					46	20	3	0	0	0	0.29519	1	5352	5352		63.534	4.7519	1	1716800			16876	718	13766	13788	18843	18843					0.030694564432451443
HWALRVSPVL	10	Unmodified	_HWALRVSPVL_					0	0	0		ENSG00000183018|ENST00000329078|SPNS2	ENSG00000183018|ENST00000329078|SPNS2	ENSG00000183018|ENST00000329078|SPNS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3387451171875	2	589.345658	1176.67676	-0.99558	-0.00058674	-3.6036	-0.0021238	-4.5992	-0.0027105	589.3433618627441	145.15	3.8411	143.72	141.74	145.58	-1.4357					179	73	4	0	0	0	0.49049	1	14279	14279		55.504	12.64	1	92509			16877	8045	13767	13789	18844	18844					0.09549106250847217
HWDRDHRRYFY	11	Unmodified	_HWDRDHRRYFY_					0	0	0		FNBP4|p.E749Gfs*13|1|0.12|ENSG00000109920|chr11:47724541-47724541|T/-|frameshift_variant;ENSG00000109920|ENST00000263773|FNBP4;nc|ENSG00000109920|Q8N3X1-2|FNBP4;ENST00000525792.5_1_11:47746320-47755666:-|nuORF	FNBP4|p.E749Gfs*13|1|0.12|ENSG00000109920|chr11:47724541-47724541|T/-|frameshift_variant	FNBP4|p.E749Gfs*13|1|0.12|ENSG00000109920|chr11:47724541-47724541|T/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.8195190429688	3	550.927274	1649.75999	1.1337	0.00062458	2.1352	0.0011763	3.2689	0.0018009	551.2631187360107	91.154	0.23848	91.154	91.057	91.296	0					8	5	2	0	0	0	0.026534	1	9794	9794		6.001	4.5823	1	120890			16878	2742	13768	13790	18845	18845					-0.03889809039242209
HWGILIALA	9	Unmodified	_HWGILIALA_					0	0	0		tr|A0A553SNS9|A0A553SNS9_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_25165PE=4SV=1	tr|A0A553SNS9|A0A553SNS9_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_25165PE=4SV=1	tr|A0A553SNS9|A0A553SNS9_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_25165PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	497.2955627441406	2	497.297645	992.580737	-0.63885	-0.0003177	-3.9627	-0.0019706	-4.6015	-0.0022883	497.29556624795856	76.294	1.7763	74.44	74.044	75.82	-1.854					92	33	4	0	0	0	0.32242	1	6304	6304		60.404	0	1	888620			16879	33957	13769	13791	18846	18846					0.08414958410730833
HWGILIALA	9	Unmodified	_HWGILIALA_					0	0	0		tr|A0A553SNS9|A0A553SNS9_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_25165PE=4SV=1	tr|A0A553SNS9|A0A553SNS9_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_25165PE=4SV=1	tr|A0A553SNS9|A0A553SNS9_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_25165PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	497.2961730957031	2	497.297645	992.580737	-0.97022	-0.00048249	-3.4975	-0.0017393	-4.4677	-0.0022218	497.2958463608088	76.536	2.2633	74.164	73.518	75.781	-2.3715					118	43	4	0	0	0	0.42921	2	3948	3948;3955		49.211	1.5535	1	1130600			16880	33957	13769	13791	18847;18848	18847					0.08414958410730833
HWGILIALA	9	Unmodified	_HWGILIALA_					0	0	0		tr|A0A553SNS9|A0A553SNS9_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_25165PE=4SV=1	tr|A0A553SNS9|A0A553SNS9_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_25165PE=4SV=1	tr|A0A553SNS9|A0A553SNS9_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_25165PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.2966003417969	2	497.297645	992.580737	-0.37395	-0.00018597	-4.3159	-0.0021463	-4.6899	-0.0023323	497.29538179073666	77.454	1.5377	74.638	74.342	75.88	-2.8165					77	31	3	0	0	0	0.32242	1	6185	6185		60.404	4.8994	1	1109400			16881	33957	13769	13791	18849	18849					0.08414958410730833
HWHKEIEL	8	Unmodified	_HWHKEIEL_					0	0	0		tr|A0A7D6VP44|A0A7D6VP44_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15185PE=4SV=1	tr|A0A7D6VP44|A0A7D6VP44_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15185PE=4SV=1	tr|A0A7D6VP44|A0A7D6VP44_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15185PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.2874755859375	2	546.285266	1090.55598	1.3848	0.00075652	0.16139	8.8163E-05	1.5462	0.00084468	546.2851800228589	138.1	1.1958	136.57	136.29	137.49	-1.5284					49	26	2	0	0	0	0.66992	1	13468	13468		49.442	1.7842	1	170140			16882	34748	13770	13792	18850	18850					0.014322785373678926
HWKQIFMEIV	10	Unmodified	_HWKQIFMEIV_					0	0	0		ENSG00000204624|ENST00000294484|DISP3	ENSG00000204624|ENST00000294484|DISP3	ENSG00000204624|ENST00000294484|DISP3	MULTI-SECPEP	OvCa9_classI_Rep3	3	444.2704162597656	3	444.237398	1329.69036	0.61957	0.00027524	2.1681	0.00096315	2.7877	0.0012384	444.2382755178449	71.26	1.0452	68.658	68.331	69.376	-2.6023					39	20	2	0	0	0	0.027142	1	3290	3290		33.922	20.414	1	199970			16883	9012	13771	13793	18851	18851					0.03870595967759982
HWKQIFMEIV	10	Unmodified	_HWKQIFMEIV_					0	0	0		ENSG00000204624|ENST00000294484|DISP3	ENSG00000204624|ENST00000294484|DISP3	ENSG00000204624|ENST00000294484|DISP3	MULTI-MATCH	OvCa9_classI_Rep2	2		3	444.237398	1329.69036	2.2588	0.0010034	0.3988	0.00017716	2.6576	0.0011806	444.23756903566476	70.971	1.0488	68.4	68.114	69.163	-2.5707	-0.22819	-0.0016661	NaN	33.922	34	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154550			16884	9012	13771	13793							0.03870595967759982
HWKQIFMEIV	10	Unmodified	_HWKQIFMEIV_					0	0	0		ENSG00000204624|ENST00000294484|DISP3	ENSG00000204624|ENST00000294484|DISP3	ENSG00000204624|ENST00000294484|DISP3	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	444.237398	1329.69036	-1.1988	-0.00053257	3.6146	0.0016057	2.4158	0.0010732	444.2389517492094	72.283	0.87682	68.826	68.558	69.434	-3.4563	0.1983	0.0026197	NaN	33.922	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146030			16885	9012	13771	13793							0.03870595967759982
HWLSAFDEI	9	Unmodified	_HWLSAFDEI_					0	0	0			REV__PRUNE2|p.V2237Cfs*11|1|0.06|ENSG00000106772|chr9:76705569-76705570|-/T|frameshift_variant	REV__PRUNE2|p.V2237Cfs*11|1|0.06|ENSG00000106772|chr9:76705569-76705570|-/T|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	559.276123046875	2	559.269281	1116.52401	2.8153	0.0015745	4.0938	0.0022896	6.9091	0.003864	559.2714133508711	80.141	0.67106	80.141	79.944	80.615	0					37	15	4	0	0	0	0.098892	1	8206	8206		97.473	4.3295	1	3921100	+		16886	17824	13772	13794	18852	18852					-0.02959133936451508
HWNKKLQP	8	Unmodified	_HWNKKLQP_					0	0	0		nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8;DNAH8|p.D2535Vfs*3|1|0.07|ENSG00000124721|chr6:38883994-38883994|A/-|frameshift_variant;DNAH8|p.L2994Pfs*25|1|0.09|ENSG00000124721|chr6:38909633-38909634|-/CCCAGGCTCAAGCCATCCTCTCA|frameshift_variant;DNAH8|p.H3947Qfs*36|1|0.13|ENSG00000124721|chr6:38971631-38971638|ATGCTCGA/-|frameshift_variant	nc|ENSG00000124721|Q96JB1-2|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.2781372070312	2	525.795801	1049.57705	-2.6368	-0.0013864	0.6095	0.00032047	-2.0273	-0.001066	526.2981819264267	49.805	0.31308	46.664	46.507	46.82	-3.1416					8	5	2	0	0	0	0.028476	1	2839	2839		26.796	0	1	11475			16887	3675	13773	13795	18853	18853					0.05424288636891106
HWPPLLPF	8	Unmodified	_HWPPLLPF_					0	0	0		ENST00000470876.1_1_5:133900168-133909634:+|nuORF	ENST00000470876.1_1_5:133900168-133909634:+|nuORF	ENST00000470876.1_1_5:133900168-133909634:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	503.7782897949219	2	503.779088	1005.54362	-3.0867	-0.001555	2.3356	0.0011766	-0.75111	-0.00037839	503.78006253314857	36.309	2.2758	33.6	32.75	35.026	-2.7097					126	45	4	0	0	0	0.7363	1	1517	1517		33.493	1.5381	1	296190			16888	12370	13774	13796	18854	18854					0.041072868649848715
HWPPLLPF	8	Unmodified	_HWPPLLPF_					0	0	0		ENST00000470876.1_1_5:133900168-133909634:+|nuORF	ENST00000470876.1_1_5:133900168-133909634:+|nuORF	ENST00000470876.1_1_5:133900168-133909634:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.7780456542969	2	503.779088	1005.54362	-0.53642	-0.00027024	-0.063337	-3.1908E-05	-0.59975	-0.00030214	503.7788775374196	22.106	2.3664	20.768	19.646	22.013	-1.3386					123	57	3	0	0	0	0.7363	2	265	265;277		33.493	6.6969	1	168480			16889	12370	13774	13796	18855;18856	18855					0.041072868649848715
HWQPPLEF	8	Unmodified	_HWQPPLEF_					0	0	0		ENSG00000114857|ENST00000232978|NKTR	ENSG00000114857|ENST00000232978|NKTR	ENSG00000114857|ENST00000232978|NKTR	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.3133544921875	2	527.261259	1052.50797	1.3949	0.00073545	-4.3034	-0.002269	-2.9086	-0.0015336	527.2588050831059	125.05	0.49861	125.05	124.79	125.29	0					19	11	2	0	0	0	0.028476	1	14464	14464		28.254	5.2118	1	260870			16890	3046	13775	13797	18857	18857					-0.01618795382682947
HWVVTEDGKI	10	Unmodified	_HWVVTEDGKI_					0	0	0		nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	MULTI-MSMS	OvCa99_classI_Rep5	1	592.3104858398438	2	592.308938	1182.60332	1.9458	0.0011525	-1.4457	-0.00085629	0.50009	0.00029621	592.3078106136935	98.095	0.85833	98.095	97.78	98.638	0					51	19	3	0	0	0	0.46756	1	10789	10789		58.782	2.0609	1	1959200			16891	1196	13776	13798	18858	18858					0.019325130177094252
HWVVTEDGKI	10	Unmodified	_HWVVTEDGKI_					0	0	0		nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	MULTI-MATCH	OvCa9_classI_Rep2	2		2	592.308938	1182.60332	-0.99536	-0.00058956	-8.2701	-0.0048984	-9.2654	-0.005488	592.3035372152514	98.865	0.74718	97.971	97.707	98.454	-0.89305	0.010482	-0.0020957	NaN	58.782	38	14	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100980			16892	1196	13776	13798							0.019325130177094252
HWVVTEDGKI	10	Unmodified	_HWVVTEDGKI_					0	0	0		nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	MULTI-MATCH	OvCa9_classI_Rep3	3		2	592.308938	1182.60332	-0.73424	-0.0004349	-8.9718	-0.0053141	-9.7061	-0.005749	592.3036404675879	99.643	0.6638	97.958	97.727	98.39	-1.685	-0.0028069	-0.002927	NaN	58.782	32	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134270			16893	1196	13776	13798							0.019325130177094252
HWVVTEDGKI	10	Unmodified	_HWVVTEDGKI_					0	0	0		nc|ENSG00000052841|Q96AE7-2|TTC17;ENSG00000052841|ENST00000039989|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	nc|ENSG00000052841|Q96AE7-2|TTC17	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	592.308938	1182.60332	-0.90053	-0.00053339	-8.7778	-0.0051992	-9.6783	-0.0057326	592.3036654248908	100.14	0.61378	97.819	97.617	98.231	-2.3253	-0.14164	-0.0026972	NaN	58.782	31	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116420			16894	1196	13776	13798							0.019325130177094252
HYAALAHYF	9	Unmodified	_HYAALAHYF_					0	0	0		ENSG00000131941|ENST00000254260|RHPN2;nc|ENSG00000131941|Q8IUC4-2|RHPN2;ENST00000566346.2_1_16:33401403-33412789:+|nuORF;RHPN2-GRIN2D|1|fusion	ENSG00000131941|ENST00000254260|RHPN2;RHPN2-GRIN2D|1|fusion	RHPN2-GRIN2D|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	546.7672119140625	2	546.766709	1091.51886	1.7182	0.00093946	0.84673	0.00046296	2.5649	0.0014024	546.7670394708704	81.928	2.1311	81.928	81.162	83.293	0					130	50	4	0	0	0	0.032374	3	8491	8430;8459;8491		133.45	83.425	1	4313200			16895	32786;4099	13777	13799	18859;18860;18861	18861					-0.023233930084188614
HYAHLIKTF	9	Unmodified	_HYAHLIKTF_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1;DOCK1-NPS|1|fusion;ENST00000495574.1_1_10:129046289-129055694:+|nuORF;ENST00000484400.5_1_10:129046280-129142589:+|nuORF	nc|ENSG00000150760|Q14185|DOCK1;ENST00000484400.5_1_10:129046280-129142589:+|nuORF	nc|ENSG00000150760|Q14185|DOCK1	MULTI-MSMS	OvCa99_classI_Rep5	1	565.3119506835938	2	565.311284	1128.60801	0.25307	0.00014306	0.82272	0.00046509	1.0758	0.00060816	565.3114783142282	60.873	1.2629	60.873	60.195	61.458	0					64	29	3	0	0	0	0.019133	1	5327	5327		148.04	70.725	1	1532700			16896	5517;12600	13778	13800	18862	18862					0.048854419511371816
HYDPTINKW	9	Unmodified	_HYDPTINKW_					0	0	0		ENSG00000171617|ENST00000302351|ENC1;nc|ENSG00000171617|O14682-2|ENC1	ENSG00000171617|ENST00000302351|ENC1	ENSG00000171617|ENST00000302351|ENC1	MULTI-MSMS	OvCa99_classI_Rep5	1	587.2916870117188	2	587.288005	1172.56146	0.63692	0.00037405	-0.52393	-0.0003077	0.11298	6.6355E-05	587.2875110759122	67.035	0.71027	67.035	66.779	67.489	0					47	17	3	0	0	0	0.03923	1	6260	6260		127.46	63.928	1	2554000			16897	7220	13779	13801	18863	18863					-0.01792042670808769
HYEMGEEL	8	Unmodified	_HYEMGEEL_					0	0	0		ENSG00000167657|ENST00000545797|DAPK3;nc|ENSG00000167657|O43293-2|DAPK3	ENSG00000167657|ENST00000545797|DAPK3	ENSG00000167657|ENST00000545797|DAPK3	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.2971496582031	2	504.210575	1006.4066	-0.8343	-0.00042067	3.6324	0.0018315	2.7981	0.0014108	504.2123314567343	65.528	0.86942	65.528	65.19	66.059	0					34	21	2	0	0	0	0.028476	1	5983	5983		52.299	31.352	1	382790			16898	6825	13780	13802	18864	18864					-0.0963503486755144
HYEMGEEL	8	Unmodified	_HYEMGEEL_					0	0	0		ENSG00000167657|ENST00000545797|DAPK3;nc|ENSG00000167657|O43293-2|DAPK3	ENSG00000167657|ENST00000545797|DAPK3	ENSG00000167657|ENST00000545797|DAPK3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	504.210575	1006.4066	-1.7424	-0.00087854	5.0055	0.0025238	3.2631	0.0016453	504.2132275288202	68.051	0.49117	65.39	65.189	65.68	-2.661	0.040067	0.0015239	NaN	42.474	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7056.3			16899	6825	13780	13802							-0.0963503486755144
HYEMGEEL	8	Unmodified	_HYEMGEEL_					0	0	0		ENSG00000167657|ENST00000545797|DAPK3;nc|ENSG00000167657|O43293-2|DAPK3	ENSG00000167657|ENST00000545797|DAPK3	ENSG00000167657|ENST00000545797|DAPK3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	504.210575	1006.4066	0.36342	0.00018324	3.0164	0.0015209	3.3798	0.0017041	504.2120478459321	68.02	0.95119	65.132	64.789	65.74	-2.8873	-0.21757	-0.00048195	NaN	42.474	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14590			16900	6825	13780	13802							-0.0963503486755144
HYFLEGGNIY	10	Unmodified	_HYFLEGGNIY_					0	0	0			REV__ENSG00000118515|ENST00000367858|SGK1	REV__ENSG00000118515|ENST00000367858|SGK1	MULTI-MSMS	OvCa99_classI_Rep5	1	606.78564453125	2	606.787838	1211.56112	1.408	0.00085436	-2.9157	-0.0017692	-1.5077	-0.00091487	606.7856111633065	145.25	1.3755	145.25	144.5	145.88	0					54	28	3	0	0	0	0.65434	1	16977	16977		35.618	2.8059	1	80107	+		16901	18404	13781	13803	18865	18865					-0.03619462390656736
HYGCHSITTII	11	Unmodified	_HYGCHSITTII_					0	0	0			REV__ENST00000423554.5_1_5:154200818-154202893:-|nuORF	REV__ENST00000423554.5_1_5:154200818-154202893:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	622.6859130859375	2	622.808248	1243.60194	0.65715	0.00040928	-2.353	-0.0014654	-1.6958	-0.0010562	622.8064289925188	151.23	0.7578	151.23	150.89	151.65	0					36	14	3	0	0	0	0.025416	1	17727	17727		42.396	5.237	1	118890	+		16902	21527	13782	13804	18866	18866					-0.010114443427028164
HYGGYLCL	8	Unmodified	_HYGGYLCL_					0	0	0		nc|ENSG00000115380|Q12805-5|EFEMP1;nc|ENSG00000115380|Q12805-2|EFEMP1;nc|ENSG00000115380|Q12805-4|EFEMP1;nc|ENSG00000115380|Q12805-3|EFEMP1;ENSG00000115380|ENST00000355426|EFEMP1;ENST00000531005.5_1_11:65638277-65638940:-|nuORF;ENSG00000172638|ENST00000307998|EFEMP2	nc|ENSG00000115380|Q12805-5|EFEMP1	nc|ENSG00000115380|Q12805-5|EFEMP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.2772521972656	2	463.215463	924.416374	-1.124	-0.00052065	-2.8223	-0.0013073	-3.9463	-0.001828	463.21399720882346	93.378	0.6577	90.87	90.513	91.171	-2.5072					26	13	3	0	0	0	0.028476	1	8150	8150		24.504	0	1	70920			16903	3092	13783	13805	18867	18867					-0.04885802071521539
HYGKVYLL	8	Unmodified	_HYGKVYLL_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-MSMS	OvCa99_classI_Rep5	1	496.7831726074219	2	496.781828	991.549102	-0.10493	-5.2125E-05	0.022863	1.1358E-05	-0.082062	-4.0767E-05	496.78164290794723	72.91	1.6387	72.91	72.61	74.249	0					83	41	3	0	0	0	0.66704	1	7117	7117		50.025	12.865	1	4107700			16904	889	13784	13806	18868	18868					0.052989656568115606
HYHNAKQYI	9	Unmodified	_HYHNAKQYI_					0	0	0			REV__ENST00000425095.1_1_10:35986317-35986536:+|nuORF	REV__ENST00000425095.1_1_10:35986317-35986536:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	587.294189453125	2	587.293622	1172.57269	-1.0296	-0.0006047	3.3509	0.001968	2.3212	0.0013632	587.295447025385	119.26	2.5013	118.23	117.93	120.43	-1.0271					129	49	5	0	0	0	0.53957	1	9061	9061		38.806	0.99462	1	734600	+		16905	25651	13785	13807	18869	18869					-0.006692205766512416
HYHWEYSI	8	Unmodified	_HYHWEYSI_					0	0	0		chr10:46302820-46307402|269|10.17|0.58|4.14|+|1|ANTXRL,ANTXRL|2	chr10:46302820-46307402|269|10.17|0.58|4.14|+|1|ANTXRL,ANTXRL|2	chr10:46302820-46307402|269|10.17|0.58|4.14|+|1|ANTXRL,ANTXRL|2	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.302490234375	2	567.753798	1133.49304	2.0378	0.0011569	-0.084003	-4.7693E-05	1.9538	0.0011093	567.7535679825423	96.878	0.72779	96.878	96.625	97.353	0					40	16	4	0	0	0	0.028476	1	10590	10590		40.573	8.6178	1	864960			16906	273	13786	13808	18870	18870					-0.06836287250666828
HYIKRRQKRPI	11	Unmodified	_HYIKRRQKRPI_					0	0	0			REV__nc|ENSG00000106823|O94769-2|ECM2	REV__nc|ENSG00000106823|O94769-2|ECM2	MULTI-MSMS	OvCa99_classI_Rep5	1	498.97552490234375	3	498.975788	1493.90553	-0.11136	-5.5568E-05	-0.33886	-0.00016908	-0.45022	-0.00022465	498.9756161325446	21.877	0.29644	21.877	21.75	22.047	0					15	10	2	0	0	0	0.72573	1	160	160		6.001	0	1	11197	+		16907	17828	13787	13809	18871	18871					0.17833698547588028
HYILHNSFF	9	Unmodified	_HYILHNSFF_					0	0	0		ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	ENSG00000163659|ENST00000295924|TIPARP	MULTI-MSMS	OvCa99_classI_Rep5	1	589.2944946289062	2	589.293091	1176.57163	1.8288	0.0010777	0.21084	0.00012425	2.0397	0.001202	589.2930893991947	93.016	2.1846	93.016	92.635	94.819	0					119	51	4	0	0	0	0.010619	2	10084	10056;10084		166.78	79.028	1	10332000			16908	6342	13788	13810	18872;18873	18873					-0.009594349455710471
HYIPRAVLL	9	Unmodified	_HYIPRAVLL_					0	0	0		ENST00000418303.1_1_7:43958366-43959461:+|nuORF;ENST00000588870.1_1_17:40811874-40817754:+|nuORF;TUBG2|p.Q175Hfs*86|1|0.04|ENSG00000037042|chr17:42663421-42663422|-/CTTTAAAATATCCTTTATAACAAAT|frameshift_variant;ENST00000589613.1_1_17:40761741-40762767:+|nuORF;ENST00000588056.1_1_17:40761755-40764233:+|nuORF;ENSG00000131462|ENST00000251413|TUBG1;ENSG00000037042|ENST00000251412|TUBG2	ENST00000418303.1_1_7:43958366-43959461:+|nuORF;ENST00000588870.1_1_17:40811874-40817754:+|nuORF	ENST00000588870.1_1_17:40811874-40817754:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	541.329833984375	2	541.329476	1080.6444	2.0078	0.0010869	-0.1188	-6.4312E-05	1.889	0.0010226	541.329211783654	85.357	1.1068	85.357	85.046	86.153	0					49	26	2	0	0	0	0.36502	1	8946	8946		55.504	9.532	1	2027600			16909	14079;11635	13789	13811	18874	18874					0.1073031884784541
HYKPTPLYF	9	Unmodified	_HYKPTPLYF_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MSMS	OvCa99_classI_Rep5	1	583.3076782226562	2	583.305667	1164.59678	0.81042	0.00047272	1.2698	0.00074067	2.0802	0.0012134	583.3063289204845	80.971	2.6346	80.971	80.443	83.078	0					165	62	5	0	0	0	0.094616	5	8302	8302;8332;8363;8431;8486		98.629	38.379	1	30253000			16910	2997	13790	13812	18875;18876;18877;18878;18879	18875					0.02106619856999714
HYLPDLHHL	9	Unmodified	_HYLPDLHHL_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5;LAMA5-GRB7|1|fusion;LAMA5-C20orf151|1|fusion	ENSG00000130702|ENST00000252999|LAMA5;LAMA5-C20orf151|1|fusion	LAMA5-C20orf151|1|fusion	MSMS	OvCa99_classI_Rep5	1	572.7999267578125	2	572.79854	1143.58253	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.895	1	74.895	74.395	75.395	0								0	0	0	0.023417	1	7430	7430		128.82	43.655	1				16911	4000;14793	13791	13813	18880	18880					0.01647967428721131
HYMKRKEAN	9	Unmodified	_HYMKRKEAN_					0	0	0		ENST00000465029.5_1_2:111419157-111435602:-|nuORF;nc|ENSG00000169679|O43683-2|BUB1;nc|ENSG00000169679|O43683-3|BUB1;ENSG00000169679|ENST00000302759|BUB1;ENST00000468927.1_1_2:111423713-111425408:-|nuORF	ENST00000465029.5_1_2:111419157-111435602:-|nuORF	ENST00000465029.5_1_2:111419157-111435602:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	588.8015747070312	2	588.800757	1175.58696	0.82396	0.00048515	1.346	0.00079255	2.17	0.0012777	588.8016945035483	142.17	0.6514	142.17	141.79	142.44	0					26	12	3	0	0	0	0.60342	1	16614	16614		31.53	6.4038	1	91116			16912	7028	13792	13814	18881	18881					0.0061910857996281266
HYMPPPYASL	10	Unmodified	_HYMPPPYASL_					0	0	0		ENSG00000157450|ENST00000348370|RNF111;nc|ENSG00000157450|Q6ZNA4|RNF111;nc|ENSG00000157450|Q6ZNA4-4|RNF111;nc|ENSG00000157450|Q6ZNA4-3|RNF111	ENSG00000157450|ENST00000348370|RNF111	ENSG00000157450|ENST00000348370|RNF111	MULTI-MSMS	OvCa99_classI_Rep5	1	588.28173828125	2	588.281334	1174.54812	2.3346	0.0013734	0.17887	0.00010522	2.5135	0.0014786	588.281330675629	94.038	2.277	94.038	93.508	95.785	0					85	53	2	0	0	0	0.55145	1	10261	10261		47.916	1.9434	1	1501400			16913	5892	13793	13815	18882	18882					-0.03217616774418275
HYNSHYEKF	9	Unmodified	_HYNSHYEKF_					0	0	0		nc|ENSG00000148219|O75129-6|ASTN2;nc|ENSG00000148219|O75129-4|ASTN2;nc|ENSG00000148219|O75129-2|ASTN2;nc|ENSG00000148219|O75129-3|ASTN2;ENSG00000148219|ENST00000313400|ASTN2	nc|ENSG00000148219|O75129-6|ASTN2	nc|ENSG00000148219|O75129-6|ASTN2	MULTI-MSMS	OvCa99_classI_Rep5	1	408.8527526855469	3	408.8526	1223.53597	0.36529	0.00014935	0.16173	6.6125E-05	0.52702	0.00021547	408.8524360063736	37.371	1.2351	37.371	37.159	38.394	0					58	26	4	0	0	0	0.32653	1	2046	2046		59.931	15.554	1	744520			16914	5392	13794	13816	18883	18883					-0.06685517193250234
HYPLNTVTF	9	Unmodified	_HYPLNTVTF_					0	0	0		nc|ENSG00000079308|Q9HBL0-1|TNS1;ENSG00000079308|ENST00000682258|TNS1;ENST00000490566.1_1_2:218669184-218678576:-|nuORF	nc|ENSG00000079308|Q9HBL0-1|TNS1	nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	OvCa99_classI_Rep5	1	546.2802124023438	2	546.279649	1090.54475	2.4235	0.0013239	-0.2809	-0.00015345	2.1427	0.0011705	546.2795422248342	96.06	1.9895	96.06	95.577	97.566	0					105	46	4	0	0	0	0.21231	1	10516	10516		74.255	10.048	1	10374000			16915	1611	13795	13817	18884	18884					0.003094564432331026
HYPPTPFSF	9	Unmodified	_HYPPTPFSF_					0	0	0		nc|ENSG00000005102|P50221-2|MEOX1;ENSG00000005102|ENST00000318579|MEOX1	nc|ENSG00000005102|P50221-2|MEOX1	nc|ENSG00000005102|P50221-2|MEOX1	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.3134765625	2	546.761092	1091.50763	1.5752	0.00086128	0.79734	0.00043596	2.3726	0.0012972	546.7613446434606	110.07	1.5193	110.07	109.55	111.07	0					72	33	3	0	0	0	0.027433	1	12534	12534		51.335	0	1	940060			16916	843	13796	13818	18885	18885					-0.03446215102530914
HYQRMHPT	8	Unmodified	_HYQRMHPT_					0	0	0		ZNF462|p.Q1930Rfs*3|1|0.04|ENSG00000148143|chr9:106929701-106929701|A/-|frameshift_variant;ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;ZNF462|p.K1242Rfs*39|1|0.04|ENSG00000148143|chr9:106927636-106927636|A/-|frameshift_variant	ZNF462|p.Q1930Rfs*3|1|0.04|ENSG00000148143|chr9:106929701-106929701|A/-|frameshift_variant	ZNF462|p.Q1930Rfs*3|1|0.04|ENSG00000148143|chr9:106929701-106929701|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.2595825195312	2	535.253443	1068.49233	-2.881	-0.0015421	-0.50689	-0.00027131	-3.3879	-0.0018134	535.2527597919689	108.42	1.0098	106.69	106.27	107.28	-1.7256					33	19	2	0	0	0	0.028476	1	9927	9927		42.396	5.237	1	37069			16917	5386	13797	13819	18886	18886					-0.039174051713644076
HYRTSKVRVLR	11	Unmodified	_HYRTSKVRVLR_					0	0	0		ENST00000453604.6_1_19:11516043-11529954:-|nuORF;ENST00000569439.5_1_19:11527382-11529954:-|nuORF;ENSG00000205517|ENST00000380456|RGL3;nc|ENSG00000205517|Q3MIN7-2|RGL3	ENST00000453604.6_1_19:11516043-11529954:-|nuORF	ENST00000453604.6_1_19:11516043-11529954:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.2833557128906	3	472.28451	1413.8317	-5.3969	-0.0025489	4.0171	0.0018972	-1.3798	-0.00065166	472.28668669654706	159.46	3.529	157.88	156.69	160.22	-1.5858					186	88	4	0	0	0	0.72516	1	15825	15825		13.508	0.55046	1	120390			16918	12074	13798	13820	18887	18887					0.14133730385242416
HYRYYVREMRI	11	Unmodified	_HYRYYVREMRI_					0	0	0		ENSG00000163636|ENST00000295901|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6;nc|ENSG00000163636|Q15008-3|PSMD6;nc|ENSG00000163636|Q15008-2|PSMD6;ENST00000476464.5_1_3:63996346-64008248:-|nuORF	ENSG00000163636|ENST00000295901|PSMD6	ENSG00000163636|ENST00000295901|PSMD6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.2908935546875	3	529.273393	1584.79835	-2.1533	-0.0011397	-0.5466	-0.0002893	-2.6999	-0.001429	529.2728396759182	50.567	0.26019	47.393	47.256	47.516	-3.1734					9	4	3	0	0	0	0.026435	1	2908	2908		14.086	0	1	5478.3			16919	6338	13799	13821	18888	18888					0.02934360551012105
HYSIALVAL	9	Unmodified	_HYSIALVAL_					0	0	0			REV__ENST00000310614.11_1_11:73575543-73575603:+|nuORF	REV__ENST00000310614.11_1_11:73575543-73575603:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	493.7862548828125	2	493.78711	985.559667	-0.2692	-0.00013293	-0.32819	-0.00016205	-0.59738	-0.00029498	493.7867393201552	121.47	1.3357	121.27	120.95	122.29	-0.19718					61	26	3	0	0	0	0.53957	1	11759	11759		38.806	8.9646	1	176810	+		16920	24345	13800	13822	18889	18889					0.06630948311226348
HYSSRLGSAIF	11	Unmodified	_HYSSRLGSAIF_					0	0	0		ENSG00000137642|ENST00000260197|SORL1;ENST00000527649.1_1_11:121498220-121500269:+|nuORF	ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	MULTI-MSMS	OvCa99_classI_Rep5	1	619.3208618164062	2	619.319837	1236.62512	1.7216	0.0010662	0.34271	0.00021225	2.0643	0.0012785	619.3200828350728	78.075	1.0777	78.075	77.714	78.791	0					76	25	5	0	0	0	0.22001	1	7883	7883		59.931	0	1	3476600			16921	4603	13801	13823	18890	18890					0.01627317766269698
HYVEKPSTF	9	Unmodified	_HYVEKPSTF_					0	0	0		GMPPA|p.L191Ifs*11|1|0.04|ENSG00000144591|chr2:219504163-219504164|-/A|frameshift_variant;GMPPA|p.L191Ffs*19|1|0.04|ENSG00000144591|chr2:219504165-219504166|-/CCAGGCACAGGCATGCAGTCGGGTG|frameshift_variant;GMPPA|p.G205Qfs*19|1|0.19|ENSG00000144591|chr2:219504205-219504206|-/CA|frameshift_variant;ENSG00000144591|ENST00000313597|GMPPA;nc|ENSG00000144591|Q96IJ6-2|GMPPA;ENST00000481170.1_1_2:220366576-220368936:+|nuORF	GMPPA|p.L191Ifs*11|1|0.04|ENSG00000144591|chr2:219504163-219504164|-/A|frameshift_variant	GMPPA|p.L191Ifs*11|1|0.04|ENSG00000144591|chr2:219504163-219504164|-/A|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	554.27783203125	2	554.277106	1106.53966	-0.56082	-0.00031085	0.5702	0.00031605	0.0093808	5.1995E-06	554.2772443381548	51.917	1.2009	51.917	51.627	52.828	0					58	27	4	0	0	0	0.38969	1	4032	4032		52.937	7.9145	1	1922800			16922	5163	13802	13824	18891	18891					-0.009348474193984657
HYWVIYPK	8	Unmodified	_HYWVIYPK_					0	0	0		chr11:12997086-13001090|278|10.34|0.0|19.98|-|0|TE_info:L1PA13,L1PA13_dup6381,L1,LINE,acceptor,-,12995692,12997086|None,RASSF10-DT|17	chr11:12997086-13001090|278|10.34|0.0|19.98|-|0|TE_info:L1PA13,L1PA13_dup6381,L1,LINE,acceptor,-,12995692,12997086|None,RASSF10-DT|17	chr11:12997086-13001090|278|10.34|0.0|19.98|-|0|TE_info:L1PA13,L1PA13_dup6381,L1,LINE,acceptor,-,12995692,12997086|None,RASSF10-DT|17	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.831298828125	2	553.295102	1104.57565	-0.94751	-0.00052425	-4.0153	-0.0022217	-4.9628	-0.0027459	553.2924735613324	65.653	0.71283	65.653	65.309	66.022	0					27	17	3	0	0	0	0.028476	1	6061	6061		35.201	0	1	718170			16923	283	13803	13825	18892	18892					0.027546545481072826
HYWVIYPK	8	Unmodified	_HYWVIYPK_					0	0	0		chr11:12997086-13001090|278|10.34|0.0|19.98|-|0|TE_info:L1PA13,L1PA13_dup6381,L1,LINE,acceptor,-,12995692,12997086|None,RASSF10-DT|17	chr11:12997086-13001090|278|10.34|0.0|19.98|-|0|TE_info:L1PA13,L1PA13_dup6381,L1,LINE,acceptor,-,12995692,12997086|None,RASSF10-DT|17	chr11:12997086-13001090|278|10.34|0.0|19.98|-|0|TE_info:L1PA13,L1PA13_dup6381,L1,LINE,acceptor,-,12995692,12997086|None,RASSF10-DT|17	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	553.295102	1104.57565	-0.49171	-0.00027206	-10.023	-0.0055459	-10.515	-0.005818	553.2893106894177	69.355	0.77988	65.874	65.565	66.345	-3.4812	0.11069	-0.0011376	NaN	19.36	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89698			16924	283	13803	13825							0.027546545481072826
HYYLAAVSPEL	11	Unmodified	_HYYLAAVSPEL_					0	0	0			REV__tr|A0A553SFS6|A0A553SFS6_NIACIATP-dependenthelicase/nucleasesubunitAOS=NialliacirculansOX=1397GN=addAPE=3SV=1	REV__tr|A0A553SFS6|A0A553SFS6_NIACIATP-dependenthelicase/nucleasesubunitAOS=NialliacirculansOX=1397GN=addAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	631.823974609375	2	631.824421	1261.63429	1.6211	0.0010243	-4.4713	-0.0028251	-2.8501	-0.0018008	631.8231092434455	146.18	1.2864	146.18	145.68	146.96	0					64	25	4	0	0	0	0.64273	1	17128	17128		40.778	0.71999	1	255590	+		16925	29616	13804	13826	18893	18893					0.01393666331955501
IAAAHTFLLKH	11	Unmodified	_IAAAHTFLLKH_					0	0	0		ENSG00000170275|ENST00000320954|CRTAP	ENSG00000170275|ENST00000320954|CRTAP	ENSG00000170275|ENST00000320954|CRTAP	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3558959960938	2	611.358765	1220.70298	-3.1571	-0.0019301	-1.2176	-0.00074436	-4.3747	-0.0026745	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.72479	1	12954	12954		18.262	0	1	666990			16926	7089	13805	13827	18894	18894					0.10145375422303005
IAAAPEASAF	10	Unmodified	_IAAAPEASAF_					0	0	0		L1PA3_dup10510|chr20:40619323-40625356:+|1.448906025747238|0.1317034148076854|3.46|417.0|345|3|anti-sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.448906025747238|0.1317034148076854|3.46|417.0|345|3|anti-sense	L1PA3_dup10510|chr20:40619323-40625356:+|1.448906025747238|0.1317034148076854|3.46|417.0|345|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.26861572265625	2	474.245275	946.475997	-0.47634	-0.0002259	3.9596	0.0018778	3.4833	0.0016519	474.2471490617547	44.778	1.2746	41.74	41.007	42.281	-3.0385					27	24	2	0	0	0	0.026822	1	2168	2168		23.042	4.7181	1	29105			16927	14674	13806	13828	18895	18895					0.0006179214351504925
IAAERHHQ	8	Unmodified	_IAAERHHQ_					0	0	0			REV__ENST00000360270.6_1_X:64887605-64936756:+|nuORF	REV__ENST00000360270.6_1_X:64887605-64936756:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	481.25189208984375	2	481.251757	960.488962	-0.84273	-0.00040557	0.3249	0.00015636	-0.51783	-0.00024921	481.25181870014075	32.71	0.74205	30.001	29.778	30.52	-2.7097					21	14	2	0	0	0	0.73626	1	1111	1111		33.516	1.5607	1	42194	+		16928	24827	13807	13829	18896	18896					0.007136680462735967
IAAGLHLADP	10	Unmodified	_IAAGLHLADP_					0	0	0			REV__ENST00000533050.5_2_11:126081309-126081687:+|nuORF	REV__ENST00000533050.5_2_11:126081309-126081687:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.2747802734375	2	489.274367	976.53418	1.4914	0.00072969	-1.6295	-0.00079726	-0.13811	-6.7575E-05	489.273468538516	85.915	1.4308	83.268	82.8	84.231	-2.6463					50	28	2	0	0	0	0.41846	1	7264	7264		65.803	0.33779	1	696840	+		16929	27252	13808	13830	18897	18897					0.044974737887855554
IAALESRVP	9	Unmodified	_IAALESRVP_					0	0	0			REV__tr|A0A553SRD6|A0A553SRD6_NIACIExtracellularsolute-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_00730PE=4SV=1	REV__tr|A0A553SRD6|A0A553SRD6_NIACIExtracellularsolute-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_00730PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.28326416015625	2	478.282192	954.549831	-0.16476	-7.8803E-05	-0.092124	-4.4061E-05	-0.25689	-0.00012286	478.28210472472836	82.803	1.4621	80.12	79.733	81.195	-2.6829					55	29	3	0	0	0	0.14739	1	6859	6859		85.359	11.104	1	2383300	+		16930	30715	13809	13831	18898	18898					0.07073760305854648
IAALPALEA	9	Unmodified	_IAALPALEA_					0	0	0			REV__ENSG00000120662|ENST00000379480|MTRF1	REV__ENSG00000120662|ENST00000379480|MTRF1	MULTI-MSMS	OvCa99_classI_Rep5	1	434.7588806152344	2	434.760561	867.506569	0.67833	0.00029491	-3.8055	-0.0016545	-3.1272	-0.0013596	434.7587848041723	32.577	0.78329	32.577	32.353	33.136	0					30	15	3	0	0	0	0.52083	1	1432	1432		40.573	1.7665	1	542300	+		16931	18506	13810	13832	18899	18899					0.06751570528570028
IAALRTHSS	9	Unmodified	_IAALRTHSS_					0	0	0		nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.28326416015625	2	478.269616	954.524678	-0.54038	-0.00025845	-3.7533	-0.0017951	-4.2937	-0.0020535	478.2676755080388	81.989	1.2578	79.306	79.012	80.27	-2.6829					69	25	4	0	0	0	0.027417	1	6859	6859		65.803	7.9919	1	385950			16932	5124	13811	13833	18900	18900					0.045597055032772005
IAAPFTSKL	9	Unmodified	_IAAPFTSKL_					0	0	0		nc|ENSG00000105726|Q9HD20-2|ATP13A1;ENSG00000105726|ENST00000357324|ATP13A1;EHMT1-ATP13A1|1|fusion;nc|ENSG00000105726|Q9HD20-3|ATP13A1;ENST00000469641.5_1_19:19756247-19760762:-|nuORF;MYO9B-ATP13A1|1|fusion;ENST00000467160.1_1_19:19758004-19758388:-|nuORF;ENST00000473243.5_1_19:19756247-19758388:-|nuORF	nc|ENSG00000105726|Q9HD20-2|ATP13A1;ENST00000467160.1_1_19:19758004-19758388:-|nuORF	nc|ENSG00000105726|Q9HD20-2|ATP13A1	MULTI-MSMS	OvCa99_classI_Rep5	1	474.2828674316406	2	474.28166	946.548768	1.8876	0.00089523	-0.15215	-7.2161E-05	1.7354	0.00082307	474.28130129514	91.324	0.73757	91.324	91.016	91.753	0					39	17	4	0	0	0	0.084918	1	9836	9836		101.25	26.998	1	2782000			16933	786;12306	13812	13834	18901	18901					0.07335545936939525
IAAPFTSKL	9	Unmodified	_IAAPFTSKL_					0	0	0		nc|ENSG00000105726|Q9HD20-2|ATP13A1;ENSG00000105726|ENST00000357324|ATP13A1;EHMT1-ATP13A1|1|fusion;nc|ENSG00000105726|Q9HD20-3|ATP13A1;ENST00000469641.5_1_19:19756247-19760762:-|nuORF;MYO9B-ATP13A1|1|fusion;ENST00000467160.1_1_19:19758004-19758388:-|nuORF;ENST00000473243.5_1_19:19756247-19758388:-|nuORF	nc|ENSG00000105726|Q9HD20-2|ATP13A1;ENST00000467160.1_1_19:19758004-19758388:-|nuORF	nc|ENSG00000105726|Q9HD20-2|ATP13A1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	474.28166	946.548768	0.41811	0.0001983	-0.56837	-0.00026957	-0.15026	-7.1267E-05	474.28122037177076	92.352	1.5571	91.184	90.446	92.003	-1.168	-0.0038382	-0.00054276	NaN	101.25	51	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52531			16934	786;12306	13812	13834							0.07335545936939525
IAAPFTSKL	9	Unmodified	_IAAPFTSKL_					0	0	0		nc|ENSG00000105726|Q9HD20-2|ATP13A1;ENSG00000105726|ENST00000357324|ATP13A1;EHMT1-ATP13A1|1|fusion;nc|ENSG00000105726|Q9HD20-3|ATP13A1;ENST00000469641.5_1_19:19756247-19760762:-|nuORF;MYO9B-ATP13A1|1|fusion;ENST00000467160.1_1_19:19758004-19758388:-|nuORF;ENST00000473243.5_1_19:19756247-19758388:-|nuORF	nc|ENSG00000105726|Q9HD20-2|ATP13A1;ENST00000467160.1_1_19:19758004-19758388:-|nuORF	nc|ENSG00000105726|Q9HD20-2|ATP13A1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	474.28166	946.548768	-0.61324	-0.00029085	0.31176	0.00014786	-0.30148	-0.00014299	474.2817638223138	93.016	1.0823	91.054	90.698	91.78	-1.9617	-0.13309	0.00029211	NaN	101.25	43	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93513			16935	786;12306	13812	13834							0.07335545936939525
IAARTLILV	9	Unmodified	_IAARTLILV_					0	0	0		ENST00000515800.6_1_5:86667940-86686697:+|nuORF;nc|ENSG00000145715|P20936-2|RASA1;nc|ENSG00000145715|P20936-4|RASA1;ENSG00000145715|ENST00000274376|RASA1	ENST00000515800.6_1_5:86667940-86686697:+|nuORF	ENST00000515800.6_1_5:86667940-86686697:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.7415466308594	2	485.326402	968.638252	-0.72117	-0.00035	0.90878	0.00044106	0.18761	9.1055E-05	485.3266729723962	70.591	1.0634	67.109	66.836	67.899	-3.4812					42	21	3	0	0	0	0.027462	1	5327	5327		37.159	23.384	1	206220			16936	5239	13813	13835	18902	18902					0.1526780061633417
IAARTLILV	9	Unmodified	_IAARTLILV_					0	0	0		ENST00000515800.6_1_5:86667940-86686697:+|nuORF;nc|ENSG00000145715|P20936-2|RASA1;nc|ENSG00000145715|P20936-4|RASA1;ENSG00000145715|ENST00000274376|RASA1	ENST00000515800.6_1_5:86667940-86686697:+|nuORF	ENST00000515800.6_1_5:86667940-86686697:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	485.326402	968.638252	-0.30828	-0.00014962	0.094758	4.5988E-05	-0.21353	-0.00010363	485.3263198632729	69.578	1.151	66.958	66.715	67.866	-2.6203	-0.075809	-0.00022803	NaN	42.396	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169640			16937	5239	13813	13835							0.1526780061633417
IAASRSAVM	9	Unmodified	_IAASRSAVM_					0	0	0		ENSG00000119280|ENST00000366663|C1orf198	ENSG00000119280|ENST00000366663|C1orf198	ENSG00000119280|ENST00000366663|C1orf198	MULTI-MSMS	OvCa99_classI_Rep5	1	453.2484436035156	2	453.247295	904.480036	-0.36709	-0.00016638	0.13579	6.1546E-05	-0.2313	-0.00010483	453.24722165884265	50.614	0.83197	50.614	50.332	51.164	0					45	18	4	0	0	0	0.18887	1	3846	3846		78.264	24.912	1	3199800			16938	3349	13814	13836	18903	18903					0.023975583655897026
IAAVALSIATL	11	Unmodified	_IAAVALSIATL_					0	0	0			REV__tr|A0A7D6ZJP4|A0A7D6ZJP4_9CLOTCation-translocatingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09190PE=4SV=1	REV__tr|A0A7D6ZJP4|A0A7D6ZJP4_9CLOTCation-translocatingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09190PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.829345703125	2	521.828975	1041.6434	-1.6815	-0.00087745	0.86022	0.00044889	-0.82127	-0.00042856	521.8292899113304	106.92	0.99155	105.04	104.75	105.74	-1.8785					52	18	4	0	0	0	0.052348	1	9746	9746		143.11	1.5865	1	576700	+		16939	32087	13815	13837	18904	18904					0.12424059688282796
IAAVALSIATL	11	Unmodified	_IAAVALSIATL_					0	0	0			REV__tr|A0A7D6ZJP4|A0A7D6ZJP4_9CLOTCation-translocatingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09190PE=4SV=1	REV__tr|A0A7D6ZJP4|A0A7D6ZJP4_9CLOTCation-translocatingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09190PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.828975	1041.6434	-0.0312	-1.6281E-05	-0.68212	-0.00035595	-0.71332	-0.00037223	521.8284509126527	105.41	1.2974	104.97	104.7	106	-0.43642	-0.034607	-0.00095561	NaN	143.11	53	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	516200	+		16940	32087	13815	13837							0.12424059688282796
IAAVILNTIN	10	Unmodified	_IAAVILNTIN_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.858642578125	2	521.318774	1040.623	1.204	0.00062767	-0.42075	-0.00021935	0.78326	0.00040833	521.3184043234403	125.48	0.65007	125.48	125.2	125.85	0					22	15	2	0	0	0	0.026553	1	14516	14516		66.429	7.6473	1	92848	+		16941	22731	13816	13838	18905	18905					0.10430889028475576
IAAVISSLEF	10	Unmodified	_IAAVISSLEF_					0	0	0			REV__tr|A0A553SJA5|A0A553SJA5_NIACIPyruvatekinaseOS=NialliacirculansOX=1397GN=pykPE=3SV=1	REV__tr|A0A553SJA5|A0A553SJA5_NIACIPyruvatekinaseOS=NialliacirculansOX=1397GN=pykPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.298583984375	2	525.297507	1048.58046	0.30271	0.00015901	-0.68087	-0.00035766	-0.37817	-0.00019865	525.2969740324694	97.355	1.3134	94.977	94.708	96.022	-2.3786					74	25	4	0	0	0	0.35697	1	8626	8626		73.975	2.679	1	328140	+		16942	29984	13817	13839	18906	18906					0.05811493900228015
IAAVLLDKL	9	Unmodified	_IAAVLLDKL_					0	0	0			REV__ENSG00000172478|ENST00000388934|MAB21L4	REV__ENSG00000172478|ENST00000388934|MAB21L4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.28326416015625	2	478.312961	954.611368	-0.20508	-9.8093E-05	0.41613	0.00019904	0.21105	0.00010095	478.3131781818449	82.832	0.24269	80.149	79.979	80.222	-2.6829					5	4	2	0	0	0	0.027279	1	6859	6859		71.296	0	1	8911.5	+		16943	21703	13818	13840	18907	18907					0.13224692005132965
IAAVRWLE	8	Unmodified	_IAAVRWLE_					0	0	0			REV__nc|ENSG00000197891|Q96S37-3|SLC22A12	REV__nc|ENSG00000197891|Q96S37-3|SLC22A12	MULTI-SECPEP	OvCa9_classI_Rep3	3	478.2953186035156	2	479.279452	956.544351	0.038081	1.8252E-05	2.4593	0.0011787	2.4974	0.0011969	479.28053894387176	98.016	0.51303	96.256	96.11	96.623	-1.7595					14	9	2	0	0	0	0.028476	1	6518	6518		28.254	6.5519	1	31736	+		16944	22962	13819	13841	18908	18908					0.06434081514032641
IAAVVFAM	8	Unmodified	_IAAVVFAM_					0	0	0			REV__ENSG00000088386|ENST00000376503|SLC15A1	REV__ENSG00000088386|ENST00000376503|SLC15A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.2233581542969	2	411.233125	820.451696	0.60279	0.00024789	4.4612	0.0018346	5.064	0.0020825	411.2348622561717	38.857	0.35738	38.857	38.705	39.063	0					14	7	3	0	0	0	0.028476	1	2222	2222		24.504	14.319	1	123340	+		16945	17177	13820	13842	18909	18909					0.034288604563016634
IADDLPHPF	9	Unmodified	_IADDLPHPF_					0	0	0		ENSG00000162337|ENST00000294304|LRP5;ENST00000529993.5_1_11:68171724-68216535:+|nuORF;LRP6|p.E1501Nfs*47|1|0.14|ENSG00000070018|chr12:12124611-12124611|C/-|frameshift_variant;ENSG00000070018|ENST00000261349|LRP6	ENSG00000162337|ENST00000294304|LRP5;LRP6|p.E1501Nfs*47|1|0.14|ENSG00000070018|chr12:12124611-12124611|C/-|frameshift_variant	LRP6|p.E1501Nfs*47|1|0.14|ENSG00000070018|chr12:12124611-12124611|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.3018798828125	2	512.758549	1023.50255	-0.64874	-0.00033264	-1.308	-0.00067068	-1.9567	-0.0010033	512.7569843944899	103.89	0.73402	101.77	101.38	102.11	-2.1192					24	13	2	0	0	0	0.027462	1	9393	9393		40.573	0	1	18055			16946	1415;6169	13821	13843	18910	18910					-0.008265189651410765
IADLIKRI	8	Unmodified	_IADLIKRI_					0	0	0		nc|ENSG00000186684|Q4G0S4-1|CYP27C1;ENSG00000186684|ENST00000664447|CYP27C1;nc|ENSG00000186684|Q4G0S4|CYP27C1;CYP27C1|p.L165Rfs*12|1|0.19|ENSG00000186684|chr2:127199434-127199435|-/C|frameshift_variant	nc|ENSG00000186684|Q4G0S4-1|CYP27C1	nc|ENSG00000186684|Q4G0S4-1|CYP27C1	MULTI-MSMS	OvCa9_classI_Rep2	2	471.31005859375	2	471.310752	940.606951	-1.3467	-0.0006347	0.9748	0.00045943	-0.37187	-0.00017526	471.31115558776486	33.805	2.3785	31.096	30.823	33.201	-2.7097					116	47	5	0	0	0	0.73626	1	1345	1345		33.516	1.5607	1	1913400			16947	8357	13822	13844	18911	18911					0.13427227582224077
IADPSSKTL	9	Unmodified	_IADPSSKTL_					0	0	0		nc|ENSG00000111799|Q99715-4|COL12A1;ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-2|COL12A1	nc|ENSG00000111799|Q99715-4|COL12A1	nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-MSMS	OvCa99_classI_Rep5	1	466.25970458984375	2	466.258382	930.502212	-0.37986	-0.00017711	0.17568	8.1913E-05	-0.20418	-9.52E-05	466.2583527326124	54.581	1.227	54.581	54.214	55.44	0					59	28	3	0	0	0	0.094616	2	4404	4404;4434		98.629	10.922	1	5591000			16948	2854	13823	13845	18912;18913	18912					0.03418061315016985
IADQLWSL	8	Unmodified	_IADQLWSL_					0	0	0			REV__nc|ENSG00000187764|Q92854-2|SEMA4D	REV__nc|ENSG00000187764|Q92854-2|SEMA4D	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.25701904296875	2	473.255643	944.496732	1.9387	0.00091748	0.59962	0.00028378	2.5383	0.0012013	473.25581335009304	67.617	1.5231	64.127	63.839	65.362	-3.4902					53	30	2	0	0	0	0.53252	1	4973	4973		74.255	0.28031	1	324000	+		16949	29061	13824	13846	18914	18914					0.022263825232016643
IADQLWSL	8	Unmodified	_IADQLWSL_					0	0	0			REV__nc|ENSG00000187764|Q92854-2|SEMA4D	REV__nc|ENSG00000187764|Q92854-2|SEMA4D	MULTI-MATCH	OvCa9_classI_Rep2	2		2	473.255643	944.496732	-0.2211	-0.00010464	3.3979	0.0016081	3.1768	0.0015035	473.2582674477763	66.935	1.3888	64.274	63.751	65.139	-2.661	0.073453	0.001493	NaN	74.255	54	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65978	+		16950	29061	13824	13846							0.022263825232016643
IADRKFQH	8	Unmodified	_IADRKFQH_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1;DOCK1-NPS|1|fusion;ENSG00000134516|ENST00000520908|DOCK2	nc|ENSG00000150760|Q14185|DOCK1;ENSG00000134516|ENST00000520908|DOCK2	ENSG00000134516|ENST00000520908|DOCK2	MULTI-MSMS	OvCa99_classI_Rep5	1	507.7803039550781	2	507.777608	1013.54066	0.99031	0.00050285	3.8731	0.0019667	4.8634	0.0024695	507.77922985648723	142.51	0.69714	142.51	142.18	142.88	0					32	13	3	0	0	0	0.66057	1	16654	16654		51.335	1.3109	1	193100			16951	4305;5517	13825	13847	18915	18915					0.034434117401815456
IADTPTSGDAF	11	Unmodified	_IADTPTSGDAF_					0	0	0			REV__ENSG00000218305|ENST00000650262|CDC14C	REV__ENSG00000218305|ENST00000650262|CDC14C	MULTI-MSMS	OvCa99_classI_Rep5	1	547.7561645507812	2	547.753661	1093.49277	1.7199	0.00094208	0.74016	0.00040543	2.4601	0.0013475	547.7538404737141	112.69	0.62865	112.69	112.39	113.02	0					29	13	3	0	0	0	0.38665	1	12822	12822		62.107	10.915	1	592100	+		16952	17071	13826	13848	18916	18916					-0.05023751761200401
IADTPTSGDAF	11	Unmodified	_IADTPTSGDAF_					0	0	0			REV__ENSG00000218305|ENST00000650262|CDC14C	REV__ENSG00000218305|ENST00000650262|CDC14C	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	547.753661	1093.49277	1.7199	0.00094208	0.74016	0.00040543	2.4601	0.0013475	547.7538404737141	112.69	0.62865	112.69	112.39	113.02	0	0	0	NaN	62.107	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	592100	+		16953	17071	13826	13848							-0.05023751761200401
IAEEREGR	8	Unmodified	_IAEEREGR_					0	0	0			REV__nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3	REV__nc|ENSG00000119041|Q9Y5Q9-2|GTF3C3	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.27557373046875	2	480.24888	958.483208	2.029	0.00097441	4.4621	0.0021429	6.491	0.0031173	480.2510681100209	77.553	0.33966	77.553	77.461	77.801	0					10	7	2	0	0	0	0.028476	1	7834	7834		31.955	0	1	126720	+		16954	18425	13827	13849	18917	18917					0.002305247439608138
IAEHADQI	8	Unmodified	_IAEHADQI_					0	0	0			REV__tr|A0A7D6W3N6|A0A7D6W3N6_9CLOTDNAtopoisomerase1OS=ClostridiumintestinaleOX=36845GN=topAPE=3SV=1	REV__tr|A0A7D6W3N6|A0A7D6W3N6_9CLOTDNAtopoisomerase1OS=ClostridiumintestinaleOX=36845GN=topAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	448.7881164550781	2	448.727249	895.439946	0.36455	0.00016358	-0.096827	-4.3449E-05	0.26772	0.00012013	448.7270910928818	47.163	1.2136	44.091	43.81	45.024	-3.0724					41	23	3	0	0	0	0.028476	1	2566	2566		58.782	5.4305	1	112220	+		16955	31919	13828	13850	18918	18918					-0.011956650333331709
IAEHSSGF	8	Unmodified	_IAEHSSGF_					0	0	0		ENST00000374580.8_1_2:203426516-203426621:+|nuORF	ENST00000374580.8_1_2:203426516-203426621:+|nuORF	ENST00000374580.8_1_2:203426516-203426621:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	424.2001953125	2	424.200867	846.387182	1.0886	0.00046179	-2.5453	-0.0010797	-1.4567	-0.00061794	424.1996754803609	127.91	1.0856	127.68	127.39	128.48	-0.22697					46	21	3	0	0	0	0.74679	1	12541	12541		28.254	1.4582	1	101840			16956	11039	13829	13851	18919	18919					-0.04215623096126819
IAEILRGVR	9	Unmodified	_IAEILRGVR_					0	0	0		ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.8239135742188	2	513.824558	1025.63456	0.64137	0.00032955	-0.47795	-0.00024558	0.16342	8.3967E-05	513.8244834183118	68.041	1.9125	64.55	64.087	66	-3.4902					122	38	5	0	0	0	0.38529	1	5041	5041		53.351	2.016	1	2120800			16957	2172	13830	13852	18920	18920					0.12277130842471706
IAEKLKDEL	9	Unmodified	_IAEKLKDEL_					0	0	0		tr|A0A7D6ZYC6|A0A7D6ZYC6_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_01680PE=4SV=1	tr|A0A7D6ZYC6|A0A7D6ZYC6_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_01680PE=4SV=1	tr|A0A7D6ZYC6|A0A7D6ZYC6_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_01680PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.3121337890625	2	529.808239	1057.60193	-1.3206	-0.00069964	-2.8954	-0.001534	-4.216	-0.0022337	529.8038544668168	106.03	2.0556	104.01	103.55	105.6	-2.0161					158	39	6	0	0	0	0.28934	1	9662	9662		64.207	0.901	1	4614300			16958	35914	13831	13853	18921	18921					0.07542878928961727
IAEKRLTMP	9	Unmodified	_IAEKRLTMP_					0	0	0			REV__tr|A0A553SFB5|A0A553SFB5_NIACIGlycosylhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_08570PE=4SV=1	REV__tr|A0A553SFB5|A0A553SFB5_NIACIGlycosylhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_08570PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	530.31298828125	2	529.804977	1057.5954	0.35582	0.00018852	1.3613	0.00072122	1.7171	0.00090973	529.8030255036192	105.38	2.0148	104.03	103.57	105.59	-1.3482					144	38	5	0	0	0	0.16524	1	7422	7422		82.305	10.927	1	4513200	+		16959	29559	13832	13854	18922	18922					0.06890662496562072
IAENPELQLQP	11	Unmodified	_IAENPELQLQP_					0	0	0		ENSG00000179023|ENST00000400664|KLHDC7A	ENSG00000179023|ENST00000400664|KLHDC7A	ENSG00000179023|ENST00000400664|KLHDC7A	MULTI-SECPEP	OvCa99_classI_Rep5	1	416.9036865234375	3	417.890832	1250.65067	0.056255	2.3508E-05	-1.8247	-0.00076252	-1.7684	-0.00073901	417.88991836373395	35.962	0.73483	35.962	35.753	36.487	0					31	15	3	0	0	0	0.025668	1	1876	1876		35.178	10.946	1	390670			16960	7794	13833	13855	18923	18923					0.035367474980375846
IAEQLTNVQ	9	Unmodified	_IAEQLTNVQ_					0	0	0		tr|A0A553SUJ1|A0A553SUJ1_NIACIHydroxyaciddehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_00225PE=3SV=1	tr|A0A553SUJ1|A0A553SUJ1_NIACIHydroxyaciddehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_00225PE=3SV=1	tr|A0A553SUJ1|A0A553SUJ1_NIACIHydroxyaciddehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_00225PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.31201171875	2	508.274564	1014.53457	0.73337	0.00037275	0.99851	0.00050752	1.7319	0.00088027	508.2749343464781	127.47	0.54459	127.23	126.89	127.43	-0.23589					15	10	2	0	0	0	0.027255	1	12462	12462		82.75	5.4329	1	20296			16961	34615	13834	13856	18924	18924					0.027888487179893673
IAERLGCTLPQ	11	Unmodified	_IAERLGCTLPQ_					0	0	0		nc|ENSG00000169282|Q14722-2|KCNAB1;nc|ENSG00000169282|Q14722-3|KCNAB1;ENSG00000169282|ENST00000490337|KCNAB1;nc|ENSG00000069424|Q13303-4|KCNAB2;nc|ENSG00000069424|Q13303-2|KCNAB2;nc|ENSG00000069424|Q13303|KCNAB2;nc|ENSG00000069424|Q13303-5|KCNAB2;ENSG00000069424|ENST00000378083|KCNAB2	nc|ENSG00000169282|Q14722-2|KCNAB1	nc|ENSG00000169282|Q14722-2|KCNAB1	MULTI-MSMS	OvCa99_classI_Rep5	1	400.88568115234375	3	400.885024	1199.63324	0.91512	0.00036686	2.5243	0.001012	3.4394	0.0013788	400.8859651246047	24.85	0.45461	24.85	24.687	25.142	0					11	8	2	0	0	0	0.70587	1	503	503		27.644	5.9582	1	36130			16962	6997	13835	13857	18925	18925					0.04141128691412632
IAESYYPE	8	Unmodified	_IAESYYPE_					0	0	0		ENSG00000161638|ENST00000293379|ITGA5	ENSG00000161638|ENST00000293379|ITGA5	ENSG00000161638|ENST00000293379|ITGA5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.3024597167969	2	486.221465	970.428378	-0.53485	-0.00026006	0.28085	0.00013655	-0.25401	-0.0001235	486.22167633585565	106.16	1.1333	104.15	103.79	104.93	-2.0161					42	21	3	0	0	0	0.028476	1	9659	9659		33.516	0	1	64724			16963	6133	13836	13858	18926	18926					-0.05801906847329974
IAETHNKP	8	Unmodified	_IAETHNKP_					0	0	0			REV__sp|P16810|IR12_HCMVAUncharacterizedproteinIRL12OS=Humancytomegalovirus(strainAD169)OX=10360PE=4SV=1	REV__sp|P16810|IR12_HCMVAUncharacterizedproteinIRL12OS=Humancytomegalovirus(strainAD169)OX=10360PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	455.2431335449219	2	455.243067	908.47158	0.8284	0.00037712	-0.70735	-0.00032202	0.12105	5.5106E-05	455.2425476957367	58.004	1.5059	55.212	54.724	56.23	-2.792					78	29	4	0	0	0	0.31378	1	4167	4167		104.75	17.05	1	406490	+		16964	29437	13837	13859	18927	18927					0.013683277206155253
IAEVASKQE	9	Unmodified	_IAEVASKQE_					0	0	0		tr|A0A7D6ZI20|A0A7D6ZI20_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_02420PE=4SV=1	tr|A0A7D6ZI20|A0A7D6ZI20_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_02420PE=4SV=1	tr|A0A7D6ZI20|A0A7D6ZI20_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_02420PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.77972412109375	2	487.761289	973.508025	0.52477	0.00025596	-0.48107	-0.00023465	0.0437	2.1315E-05	487.76088734024745	72.162	1.1489	69.655	69.174	70.323	-2.5071					28	21	2	0	0	0	0.027447	1	5862	5862		47.657	19.775	1	36418			16965	35601	13838	13860	18928	18928					0.020211598266769215
IAEVESLVL	9	Unmodified	_IAEVESLVL_					0	0	0			REV__tr|A0A7D6ZPG0|A0A7D6ZPG0_9CLOTPhagetailsheathsubtilisin-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20120PE=3SV=1	REV__tr|A0A7D6ZPG0|A0A7D6ZPG0_9CLOTPhagetailsheathsubtilisin-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20120PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.78466796875	2	486.784233	971.553913	-0.65795	-0.00032028	1.7634	0.00085839	1.1054	0.00053811	486.7849740245438	73.688	1.2894	71.201	70.727	72.016	-2.4873					78	25	4	0	0	0	0.22961	1	3614	3614		71.296	10.892	1	611920	+		16966	32135	13839	13861	18929	18929					0.0669980500889551
IAEVLPLAE	9	Unmodified	_IAEVLPLAE_					0	0	0			REV__ENSG00000105732|ENST00000359044|ZNF574	REV__ENSG00000105732|ENST00000359044|ZNF574	MULTI-MSMS	OvCa9_classI_Rep2	2	477.7771301269531	2	477.778951	953.543348	0.30924	0.00014775	-3.8089	-0.0018198	-3.4997	-0.0016721	477.7771636832581	43.542	2.3879	40.832	40.509	42.897	-2.7097					104	47	3	0	0	0	0.44294	1	2421	2421		47.916	7.343	1	3363800	+		16967	17756	13840	13862	18930	18930					0.06471822354478718
IAEWPVAVL	9	Unmodified	_IAEWPVAVL_					0	0	0		ENSG00000140323|ENST00000267889|DISP2;DISP2|p.W217Gfs*22|1|0.08|ENSG00000140323|chr15:40364882-40364882|C/-|frameshift_variant	ENSG00000140323|ENST00000267889|DISP2	ENSG00000140323|ENST00000267889|DISP2	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.73681640625	2	499.289485	996.564418	-2.7758	-0.0013859	-1.452	-0.00072496	-4.2278	-0.0021109	499.2885587623733	37.083	1.3291	34.374	33.844	35.173	-2.7097					46	26	3	0	0	0	0.027462	1	1621	1621		40.573	17.536	1	47123			16968	4832	13841	13863	18931	18931					0.06599832453991894
IAEWRRKRK	9	Unmodified	_IAEWRRKRK_					0	0	0		tr|A0A553SSA7|A0A553SSA7_NIACIDNA-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_02765PE=4SV=1	tr|A0A553SSA7|A0A553SSA7_NIACIDNA-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_02765PE=4SV=1	tr|A0A553SSA7|A0A553SSA7_NIACIDNA-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_02765PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.90850830078125	3	414.922912	1241.74691	0.34665	0.00014383	-3.6291	-0.0015058	-3.2825	-0.001362	414.92130141954226	42.643	0.21349	42.643	42.583	42.796	0					6	4	2	0	0	0	0.027462	1	2753	2753		16.717	3.7599	1	90736			16969	34351	13842	13864	18932	18932					0.13570404639290246
IAEYSIVKI	9	Unmodified	_IAEYSIVKI_					0	0	0			REV__tr|A0A7D7ABP1|A0A7D7ABP1_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16140PE=4SV=1	REV__tr|A0A7D7ABP1|A0A7D7ABP1_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16140PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.307373046875	2	518.307875	1034.6012	-0.75506	-0.00039136	0.35935	0.00018625	-0.39571	-0.0002051	518.3079776494031	127.8	1.0346	126.37	126.19	127.22	-1.4357					44	19	3	0	0	0	0.50149	1	12206	12206		42.396	0	1	109700	+		16970	32678	13843	13865	18933	18933					0.08528084279919312
IAFARGIKLS	10	Unmodified	_IAFARGIKLS_					0	0	0		ENSG00000137992|ENST00000370132|DBT	ENSG00000137992|ENST00000370132|DBT	ENSG00000137992|ENST00000370132|DBT	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.3160400390625	2	538.334759	1074.65496	1.3067	0.00070343	-0.74793	-0.00040264	0.55875	0.00030079	538.3344539151376	71.659	0.34788	69.057	68.932	69.28	-2.6023					9	6	2	0	0	0	0.023365	1	3379	3379		138.83	42.635	1	10054			16971	4643	13844	13866	18934	18934					0.12062301502282935
IAFAYSLIILL	11	Unmodified	_IAFAYSLIILL_					0	0	0		ENSG00000165240|ENST00000341514|ATP7A;nc|ENSG00000165240|Q04656-2|ATP7A;nc|ENSG00000165240|Q04656-3|ATP7A	ENSG00000165240|ENST00000341514|ATP7A	ENSG00000165240|ENST00000341514|ATP7A	MULTI-MSMS	OvCa9_classI_Rep2	2	412.9262390136719	3	412.924925	1235.75295	-0.25244	-0.00010424	3.8201	0.0015774	3.5677	0.0014732	412.92657077571874	54.81	2.7333	51.996	51.573	54.306	-2.8139					157	54	5	0	0	0	0.56391	2	3827	3784;3827		47.96	4.3087	1	2429000			16972	6539	13845	13867	18935;18936	18936					0.14450065307619298
IAFDDQKGL	9	Unmodified	_IAFDDQKGL_					0	0	0			REV__ENSG00000226490|ENST00000643770|C8orf90	REV__ENSG00000226490|ENST00000643770|C8orf90	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.2641906738281	2	503.763832	1005.51311	-0.42187	-0.00021252	-2.852	-0.0014368	-3.2739	-0.0016493	503.76215909248856	39.078	1.1411	36.152	35.651	36.792	-2.9264					58	22	5	0	0	0	0.027462	1	1635	1635		37.159	1.5408	1	202820	+		16973	23372	13846	13868	18937	18937					0.010574636892783928
IAFLLPTNN	9	Unmodified	_IAFLLPTNN_					0	0	0			REV__nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	REV__nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.3035583496094	2	501.784567	1001.55458	-0.57565	-0.00028885	-3.2237	-0.0016176	-3.7994	-0.0019065	501.7825868361503	45.132	0.99968	42.422	42.099	43.099	-2.7097					38	19	3	0	0	0	0.027462	1	2621	2621		29.15	2.4566	1	92838	+		16974	23563	13847	13869	18938	18938					0.05386644448606148
IAFMNKAG	8	Oxidation (M)	_IAFM(Oxidation (M))NKAG_		IAFM(1)NKAG		IAFM(78)NKAG	0	0	1			REV__ENSG00000143971|ENST00000272342|ETAA1	REV__ENSG00000143971|ENST00000272342|ETAA1	MULTI-MSMS	OvCa99_classI_Rep5	1	434.2253112792969	2	434.223288	866.432024	2.3422	0.001017	1.126	0.00048894	3.4682	0.001506	434.22360779184106	134.67	1.4472	134.67	134.43	135.88	0					70	31	3	0	0	0	0.49583	1	15665	15665		77.944	12.046	1	1064400	+		16975	19881	13848	13870	18939	18939		458			-0.006535155544497684
IAFRTDTQ	8	Unmodified	_IAFRTDTQ_					0	0	0		ENST00000536441.6_2_11:94900525-94900600:-|nuORF	ENST00000536441.6_2_11:94900525-94900600:-|nuORF	ENST00000536441.6_2_11:94900525-94900600:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.2856750488281	2	476.248349	950.482145	0.39	0.00018574	0.92078	0.00043852	1.3108	0.00062426	476.2485920106612	59.122	0.80051	55.73	55.3	56.1	-3.392					23	15	2	0	0	0	0.028476	1	3938	3938		17.365	0	1	73894			16976	13389	13849	13871	18940	18940					0.004923103750343216
IAFSTLVTGE	10	Unmodified	_IAFSTLVTGE_					0	0	0			REV__nc|ENSG00000166473|Q7Z442-2|PKD1L2	REV__nc|ENSG00000166473|Q7Z442-2|PKD1L2	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.8486938476562	2	519.279315	1036.54408	1.306	0.00067819	-2.1774	-0.0011307	-0.87135	-0.00045247	519.2798681749111	126.61	0.73205	126.61	126.18	126.91	0					34	15	3	0	0	0	0.026697	1	14632	14632		29.15	0	1	246390	+		16977	28980	13850	13872	18941	18941					0.027266170035545656
IAFVQLNSI	9	Unmodified	_IAFVQLNSI_					0	0	0			REV__ENSG00000163735|ENST00000296027|CXCL5	REV__ENSG00000163735|ENST00000296027|CXCL5	MULTI-MSMS	OvCa99_classI_Rep5	1	502.7913818359375	2	502.792392	1003.57023	2.6084	0.0013115	-1.0272	-0.00051647	1.5812	0.00079501	502.79164340353145	100.71	0.66044	100.71	100.4	101.06	0					29	15	2	0	0	0	0.11471	1	11210	11210		93.195	1.0048	1	5269300	+		16978	20880	13851	13873	18942	18942					0.06858930965665877
IAGARILV	8	Unmodified	_IAGARILV_					0	0	0			REV__tr|A0A7D6VSI5|A0A7D6VSI5_9CLOTV-typeATPsynthasesubunitIOS=ClostridiumintestinaleOX=36845GN=HZF06_16700PE=3SV=1	REV__tr|A0A7D6VSI5|A0A7D6VSI5_9CLOTV-typeATPsynthasesubunitIOS=ClostridiumintestinaleOX=36845GN=HZF06_16700PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.2174987792969	2	406.771263	811.527973	0.78387	0.00031885	-0.48509	-0.00019732	0.29878	0.00012153	406.77089013922364	55.549	0.48706	55.549	55.401	55.888	0					16	11	2	0	0	0	0.028476	1	4589	4589		28.254	5.2176	1	211040	+		16979	31506	13852	13874	18943	18943					0.11467000347943213
IAGDRNCVI	9	Unmodified	_IAGDRNCVI_					0	0	0			REV__tr|A0A7D7A3J1|A0A7D7A3J1_9CLOTNAD-dependentmalicenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_23840PE=3SV=1	REV__tr|A0A7D7A3J1|A0A7D7A3J1_9CLOTNAD-dependentmalicenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_23840PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	480.74957275390625	2	480.750201	959.48585	-1.0394	-0.00049969	1.0339	0.00049703	-0.0055168	-2.6522E-06	480.7505959208067	48.711	0.59871	45.951	45.578	46.177	-2.7603					36	11	4	0	0	0	0.51865	1	3070	3070		40.778	1.5253	1	554530	+		16980	32586	13853	13875	18944	18944					0.004486568772449573
IAGDRNCVI	9	Unmodified	_IAGDRNCVI_					0	0	0			REV__tr|A0A7D7A3J1|A0A7D7A3J1_9CLOTNAD-dependentmalicenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_23840PE=3SV=1	REV__tr|A0A7D7A3J1|A0A7D7A3J1_9CLOTNAD-dependentmalicenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_23840PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.75347900390625	2	480.750201	959.48585	-1.3934	-0.00066986	1.2913	0.00062079	-0.10207	-4.9072E-05	480.7509707644904	48.927	0.57302	45.819	45.451	46.024	-3.1077					34	10	4	0	0	0	0.40667	1	2720	2720		51.335	1.8939	1	2706600	+		16981	32586	13853	13875	18945	18945					0.004486568772449573
IAGDRNCVI	9	Unmodified	_IAGDRNCVI_					0	0	0			REV__tr|A0A7D7A3J1|A0A7D7A3J1_9CLOTNAD-dependentmalicenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_23840PE=3SV=1	REV__tr|A0A7D7A3J1|A0A7D7A3J1_9CLOTNAD-dependentmalicenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_23840PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.7508544921875	2	480.750201	959.48585	-2.0604	-0.00099055	1.2662	0.00060872	-0.79423	-0.00038183	480.7508123397447	49.386	2.9185	46.245	45.99	48.908	-3.1416					151	56	4	0	0	0	0.21395	1	2816	2816		73.975	6.4811	1	3063100	+		16982	32586	13853	13875	18946	18946					0.004486568772449573
IAGEIHQT	8	Unmodified	_IAGEIHQT_					0	0	0			REV__nc|ENSG00000123453|Q9UL12-2|SARDH	REV__nc|ENSG00000123453|Q9UL12-2|SARDH	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.78125	2	434.729792	867.445031	0.58427	0.000254	-0.11883	-5.1658E-05	0.46544	0.00020234	434.72944108280956	57.568	0.96633	54.223	53.832	54.799	-3.3449					34	18	3	0	0	0	0.028476	1	3743	3743		6.7355	0.42289	1	41060	+		16983	18641	13854	13876	18947	18947					0.006006388292917109
IAGELTPIPQ	10	Unmodified	_IAGELTPIPQ_					0	0	0		tr|A0A553SP50|A0A553SP50_NIACIMethionyl-tRNAformyltransferaseOS=NialliacirculansOX=1397GN=fmtPE=3SV=1	tr|A0A553SP50|A0A553SP50_NIACIMethionyl-tRNAformyltransferaseOS=NialliacirculansOX=1397GN=fmtPE=3SV=1	tr|A0A553SP50|A0A553SP50_NIACIMethionyl-tRNAformyltransferaseOS=NialliacirculansOX=1397GN=fmtPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	519.7938842773438	2	519.795132	1037.57571	-0.83173	-0.00043233	-1.6752	-0.00087074	-2.5069	-0.0013031	519.7941003158112	120.39	3.5079	120.22	119.69	123.2	-0.17137					148	70	4	0	0	0	0.39172	2	11614	11591;11614		69.628	5.3864	1	553870			16984	34002	13855	13877	18948;18949	18949					0.05842609757473838
IAGELTPIPQ	10	Unmodified	_IAGELTPIPQ_					0	0	0		tr|A0A553SP50|A0A553SP50_NIACIMethionyl-tRNAformyltransferaseOS=NialliacirculansOX=1397GN=fmtPE=3SV=1	tr|A0A553SP50|A0A553SP50_NIACIMethionyl-tRNAformyltransferaseOS=NialliacirculansOX=1397GN=fmtPE=3SV=1	tr|A0A553SP50|A0A553SP50_NIACIMethionyl-tRNAformyltransferaseOS=NialliacirculansOX=1397GN=fmtPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	519.7930908203125	2	519.795132	1037.57571	1.5307	0.00079564	-4.1853	-0.0021755	-2.6546	-0.0013798	519.7927708482009	121.53	4.9018	120.5	119.85	124.76	-1.0286					197	93	4	0	0	0	0.42962	2	9335	9323;9335		64.207	3.6845	1	827300			16985	34002	13855	13877	18950;18951	18951					0.05842609757473838
IAGELTPIPQ	10	Unmodified	_IAGELTPIPQ_					0	0	0		tr|A0A553SP50|A0A553SP50_NIACIMethionyl-tRNAformyltransferaseOS=NialliacirculansOX=1397GN=fmtPE=3SV=1	tr|A0A553SP50|A0A553SP50_NIACIMethionyl-tRNAformyltransferaseOS=NialliacirculansOX=1397GN=fmtPE=3SV=1	tr|A0A553SP50|A0A553SP50_NIACIMethionyl-tRNAformyltransferaseOS=NialliacirculansOX=1397GN=fmtPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.7928466796875	2	519.795132	1037.57571	-0.39548	-0.00020557	-2.2434	-0.0011661	-2.6389	-0.0013717	519.7938318646319	121.84	4.0005	120.49	119.9	123.9	-1.3479					152	78	4	0	0	0	0.39172	2	11484	11484;11582		69.628	5.4204	1	769080			16986	34002	13855	13877	18952;18953	18952					0.05842609757473838
IAGGGGRGRR	10	Unmodified	_IAGGGGRGRR_					0	0	0			REV__nc|ENSG00000146232|O00221|NFKBIE	REV__nc|ENSG00000146232|O00221|NFKBIE	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.7803955078125	2	478.778474	955.542394	0.15186	7.2709E-05	0.46762	0.00022389	0.61949	0.0002966	478.77859349645075	75.028	2.9296	71.797	71.289	74.218	-3.2308					117	60	4	0	0	0	0.17982	1	5893	5893		97.473	12.312	1	7866200	+		16987	28916	13856	13878	18954	18954					0.0628446554879929
IAGGQVQTLV	10	Unmodified	_IAGGQVQTLV_					0	0	0			REV__TG|p.S2274Lfs*71|1|0.03|ENSG00000042832|chr8:133019639-133019640|-/TG|frameshift_variant	REV__TG|p.S2274Lfs*71|1|0.03|ENSG00000042832|chr8:133019639-133019640|-/TG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.802490234375	2	493.287474	984.560395	0.17193	8.4812E-05	0.85795	0.00042322	1.0299	0.00050803	493.287493220597	57.799	0.60898	54.454	54.24	54.849	-3.3449					16	11	2	0	0	0	0.026659	1	3755	3755		30.318	1.1682	1	32527	+		16988	16644	13857	13879	18955	18955					0.06749742960289495
IAGGTIISSL	10	Unmodified	_IAGGTIISSL_					0	0	0		tr|A0A553SS87|A0A553SS87_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_02630PE=4SV=1	tr|A0A553SS87|A0A553SS87_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_02630PE=4SV=1	tr|A0A553SS87|A0A553SS87_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_02630PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	466.27789306640625	2	466.276575	930.538597	-0.52885	-0.00024659	0.27304	0.00012731	-0.25581	-0.00011928	466.27652885329314	68.28	0.77777	68.28	67.996	68.774	0					36	18	3	0	0	0	0.13504	1	6433	6433		104.75	3.4939	1	1781500			16989	34344	13858	13880	18956	18956					0.07054938211717854
IAGGTIISSL	10	Unmodified	_IAGGTIISSL_					0	0	0		tr|A0A553SS87|A0A553SS87_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_02630PE=4SV=1	tr|A0A553SS87|A0A553SS87_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_02630PE=4SV=1	tr|A0A553SS87|A0A553SS87_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_02630PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	465.75360107421875	2	466.276575	930.538597	-0.82195	-0.00038326	2.2166	0.0010336	1.3947	0.00065031	466.27734524824734	60.347	1.3694	57.576	57.032	58.402	-2.7702					53	25	3	0	0	0	0.027965	1	4396	4396		79.451	0	1	128900			16990	34344	13858	13880	18957	18957					0.07054938211717854
IAGGTIISSL	10	Unmodified	_IAGGTIISSL_					0	0	0		tr|A0A553SS87|A0A553SS87_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_02630PE=4SV=1	tr|A0A553SS87|A0A553SS87_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_02630PE=4SV=1	tr|A0A553SS87|A0A553SS87_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_02630PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	466.276575	930.538597	-0.9634	-0.00044921	0.86491	0.00040329	-0.098495	-4.5926E-05	466.27684114098327	71.612	1.0748	68.156	67.874	68.949	-3.4563	-0.062271	0.00022965	NaN	104.75	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146160			16991	34344	13858	13880							0.07054938211717854
IAGHLLRAI	9	Unmodified	_IAGHLLRAI_					0	0	0		ENST00000551947.5_1_14:65410101-65410599:+|nuORF	ENST00000551947.5_1_14:65410101-65410599:+|nuORF	ENST00000551947.5_1_14:65410101-65410599:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.2857971191406	2	482.308544	962.602535	2.5426	0.0012263	-1.3058	-0.00062982	1.2368	0.00059651	482.30762908973	84.531	0.2849	84.531	84.431	84.716	0					9	6	2	0	0	0	0.027373	1	8848	8848		71.378	13.567	1	196100			16992	13606	13859	13881	18958	18958					0.1197376315932388
IAGHMSLKL	9	Unmodified	_IAGHMSLKL_					0	0	0			REV__tr|A0A7D7A1W5|A0A7D7A1W5_9CLOTIS1595familytransposaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14105PE=4SV=1	REV__tr|A0A7D7A1W5|A0A7D7A1W5_9CLOTIS1595familytransposaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14105PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.72564697265625	2	485.281137	968.547722	-0.57722	-0.00028011	3.5847	0.0017396	3.0075	0.0014595	485.28324494538066	39.514	0.95796	39.514	38.882	39.84	0					45	21	3	0	0	0	0.027433	1	2252	2252		38.806	3.1879	1	328570	+		16993	32511	13860	13882	18959	18959					0.0621900829637525
IAGITPEQLP	10	Unmodified	_IAGITPEQLP_					0	0	0		tr|A0A553SFF1|A0A553SFF1_NIACIGluconokinaseOS=NialliacirculansOX=1397GN=gntKPE=3SV=1	tr|A0A553SFF1|A0A553SFF1_NIACIGluconokinaseOS=NialliacirculansOX=1397GN=gntKPE=3SV=1	tr|A0A553SFF1|A0A553SFF1_NIACIGluconokinaseOS=NialliacirculansOX=1397GN=gntKPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	519.7935180664062	2	519.795132	1037.57571	1.5307	0.00079564	-4.1853	-0.0021755	-2.6546	-0.0013798	519.7927708482009	121.53	4.9018	120.5	119.85	124.76	-1.0286					197	93	4	0	0	0	0.41408	1	9305	9305		66.429	2.222	1	827300			16994	33032	13861	13883	18960	18960					0.058426097574511004
IAGIWLVALAL	11	Unmodified	_IAGIWLVALAL_					0	0	0		ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	ENSG00000075073|ENST00000373306|TACR2	MULTI-MSMS	OvCa9_classI_Rep3	3	570.3639526367188	2	570.362985	1138.71142	0.6132	0.00034975	-0.74106	-0.00042267	-0.12786	-7.2926E-05	570.3624601174047	66.945	1.9604	64.058	63.78	65.74	-2.8873					102	38	5	0	0	0	0.69331	1	2815	2815		31.955	0	1	407820			16995	1522	13862	13884	18961	18961					0.147609293389678
IAGLDTPPDVD	11	Unmodified	_IAGLDTPPDVD_					0	0	0		ENSG00000137573|ENST00000402687|SULF1;ENST00000521946.5_1_8:70505207-70554528:+|nuORF;SULF1|p.R637Ifs*19|1|0.12|ENSG00000137573|chr8:69627266-69627281|CCAGAGCGTGGAAGGA/-|frameshift_variant	ENSG00000137573|ENST00000402687|SULF1	ENSG00000137573|ENST00000402687|SULF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.3300170898438	2	556.777136	1111.53972	0.7018	0.00039075	-0.55813	-0.00031075	0.14367	7.9993E-05	556.7770052913755	109.61	0.26447	107.88	107.78	108.05	-1.7256					6	4	2	0	0	0	0.025239	1	10068	10068		32.812	0	1	9474.9			16996	4599	13863	13885	18962	18962					-0.011588922100372656
IAGLKPTEEEA	11	Unmodified	_IAGLKPTEEEA_					0	0	0		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.2669677734375	2	579.306061	1156.59757	0.95095	0.00055089	-3.4997	-0.0020274	-2.5487	-0.0014765	579.303994443339	123.4	0.28356	123.4	123.18	123.47	0					8	5	2	0	0	0	0.025912	1	14210	14210		11.636	2.9422	1	78967			16997	2658	13864	13886	18963	18963					0.025533697154060064
IAGLPGVTIL	10	Unmodified	_IAGLPGVTIL_					0	0	0			REV__tr|A0A553SKR3|A0A553SKR3_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_19165PE=4SV=1	REV__tr|A0A553SKR3|A0A553SKR3_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_19165PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.2937316894531	2	477.305136	952.595718	0.5058	0.00024142	-1.7921	-0.00085539	-1.2863	-0.00061397	477.30414936791016	75.509	0.29153	72.57	72.449	72.741	-2.9389					7	5	2	0	0	0	0.026822	1	5965	5965		23.042	7.4007	1	23065	+		16998	30147	13865	13887	18964	18964					0.11752405488095974
IAGLVPVELLK	11	Unmodified	_IAGLVPVELLK_					0	0	0			REV__tr|A0A7D6ZWG5|A0A7D6ZWG5_9CLOTLipopolysaccharidebiosynthesisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18815PE=3SV=1	REV__tr|A0A7D6ZWG5|A0A7D6ZWG5_9CLOTLipopolysaccharidebiosynthesisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18815PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	576.37158203125	2	576.373549	1150.73255	-1.827	-0.001053	-0.73389	-0.000423	-2.5608	-0.001476	576.3730150957791	53.322	1.3909	50.508	50.182	51.573	-2.8139					65	27	4	0	0	0	0.72459	1	3624	3624		20.947	0.95016	1	195240	+		16999	32285	13866	13888	18965	18965					0.1632089464778801
IAGLWPLVK	9	Unmodified	_IAGLWPLVK_					0	0	0			REV__ENSG00000095564|ENST00000265990|BTAF1	REV__ENSG00000095564|ENST00000265990|BTAF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.8010559082031	2	498.81567	995.616788	-0.46995	-0.00023442	0.89775	0.00044781	0.4278	0.00021339	498.81628227617887	51.975	0.45412	48.802	48.624	49.078	-3.1734					12	8	2	0	0	0	0.027456	1	3097	3097		35.201	0	1	27010	+		17000	17292	13867	13889	18966	18966					0.1188041558760915
IAGNSEKAIQ	10	Unmodified	_IAGNSEKAIQ_					0	0	0			REV__tr|A0A7D6ZIP8|A0A7D6ZIP8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07925PE=4SV=1	REV__tr|A0A7D6ZIP8|A0A7D6ZIP8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07925PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.780029296875	2	515.780013	1029.54547	-0.80524	-0.00041533	0.60792	0.00031355	-0.19732	-0.00010177	515.7801625157613	28.962	0.54888	28.962	28.688	29.237	0					15	10	2	0	0	0	0.45822	1	997	997		60.118	8.9256	1	181440	+		17001	32065	13868	13890	18967	18967					0.03188251092274186
IAGPLWCPAL	10	Unmodified	_IAGPLWCPAL_					0	0	0			REV__ENST00000505276.2_1_12:3407303-3409365:-|nuORF	REV__ENST00000505276.2_1_12:3407303-3409365:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.7630004882812	2	520.783513	1039.55247	-0.058186	-3.0302E-05	-3.0177	-0.0015716	-3.0759	-0.0016019	521.2825417398368	60.595	1.4857	57.165	56.358	57.844	-3.43					59	29	3	0	0	0	0.026672	1	4186	4186		35.201	0	1	49347	+		17002	26874	13869	13891	18968	18968					0.03427892439140123
IAGRQEILP	9	Unmodified	_IAGRQEILP_					0	0	0			REV__tr|A0A7D6VQN1|A0A7D6VQN1_9CLOTSmallmulti-drugexportproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02405PE=4SV=1	REV__tr|A0A7D6VQN1|A0A7D6VQN1_9CLOTSmallmulti-drugexportproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02405PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.9430847167969	2	498.795466	995.57638	0.16486	8.2229E-05	-1.4489	-0.0007227	-1.284	-0.00064047	498.79521875869654	80.885	1.6134	79.19	78.519	80.132	-1.6951					55	31	3	0	0	0	0.027426	1	6858	6858		44.117	1.7207	1	77940	+		17003	31341	13870	13892	18969	18969					0.07841449197189831
IAGRTRRRPSR	11	Unmodified	_IAGRTRRRPSR_					0	0	0			REV__ENST00000543226.1_1_19:57874980-57876193:+|nuORF	REV__ENST00000543226.1_1_19:57874980-57876193:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	442.6031188964844	3	442.604354	1324.79123	-1.4984	-0.0006632	-4.1112	-0.0018196	-5.6096	-0.0024828	442.6024623792791	50.389	2.298	47.247	46.61	48.908	-3.1416					99	44	3	0	0	0	0.68059	1	2909	2909		36.318	2.2311	1	430660	+		17004	27389	13871	13893	18970	18970					0.1418280878551741
IAGSINALVR	10	Unmodified	_IAGSINALVR_					0	0	0		tr|A0A7D6VPP1|A0A7D6VPP1_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23675PE=4SV=1	tr|A0A7D6VPP1|A0A7D6VPP1_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23675PE=4SV=1	tr|A0A7D6VPP1|A0A7D6VPP1_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23675PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.3074035644531	2	507.308741	1012.60293	-0.91362	-0.00046349	1.0188	0.00051685	0.10519	5.3362E-05	507.30906110170537	47.765	1.1428	45.055	44.737	45.879	-2.7097					43	22	3	0	0	0	0.37436	1	2941	2941		71.877	20.685	1	157500			17005	34783	13872	13894	18971	18971					0.0971313808852301
IAGSLAVVTD	10	Unmodified	_IAGSLAVVTD_					0	0	0		nc|ENSG00000164756|Q8IWU4-2|SLC30A8;ENSG00000164756|ENST00000456015|SLC30A8	nc|ENSG00000164756|Q8IWU4-2|SLC30A8	nc|ENSG00000164756|Q8IWU4-2|SLC30A8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.2774353027344	2	473.266207	944.517862	1.9651	0.00093003	-0.096684	-4.5757E-05	1.8684	0.00088427	473.264156938597	86.463	0.14738	83.836	83.713	83.86	-2.6269					4	2	2	0	0	0	0.026956	1	7304	7304		26.693	0	1	6795			17006	6485	13873	13895	18972	18972					0.04338347832049294
IAGTKKRVI	9	Unmodified	_IAGTKKRVI_					0	0	0		ENSG00000140986|ENST00000268661|RPL3L	ENSG00000140986|ENST00000268661|RPL3L	ENSG00000140986|ENST00000268661|RPL3L	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.31982421875	2	493.329476	984.6444	0.1298	6.4036E-05	2.4994	0.001233	2.6292	0.0012971	493.33083552854885	104.64	0.51849	103.2	103.12	103.64	-1.4347					12	9	2	0	0	0	0.027462	1	7327	7327		55.504	25.663	1	16083			17007	4886	13874	13896	18973	18973					0.15146318847837392
IAGTVNIDF	9	Unmodified	_IAGTVNIDF_					0	0	0		ENSG00000136381|ENST00000258886|IREB2;ENST00000559676.1_1_15:78777183-78780743:+|nuORF	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	MULTI-SECPEP	OvCa9_classI_Rep3	3	475.2900390625	2	475.2531	948.491647	0.014667	6.9703E-06	-2.1119	-0.0010037	-2.0972	-0.00099671	475.25175872820387	96.134	0.90115	94.305	93.978	94.879	-1.8286					18	17	2	0	0	0	0.027462	1	6367	6367		38.806	23.941	1	32108			17008	4487	13875	13897	18974	18974					0.015340786605634094
IAGVRAPK	8	Unmodified	_IAGVRAPK_					0	0	0			REV__nc|ENSG00000114529|Q5BVD1-3|TTMP	REV__nc|ENSG00000114529|Q5BVD1-3|TTMP	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.8944091796875	2	406.261062	810.507572	1.5935	0.00064739	-1.4887	-0.0006048	0.10483	4.2589E-05	406.26029666884875	46.014	0.56935	46.014	45.8	46.369	0					21	12	2	0	0	0	0.028476	1	3210	3210		8.2313	0	1	901750	+		17009	28807	13876	13898	18975	18975					0.09473829688124624
IAGVRLVKAF	10	Unmodified	_IAGVRLVKAF_					0	0	0		tr|A0A7D6VWK5|A0A7D6VWK5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04500PE=4SV=1	tr|A0A7D6VWK5|A0A7D6VWK5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04500PE=4SV=1	tr|A0A7D6VWK5|A0A7D6VWK5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04500PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.7806396484375	2	537.345126	1072.6757	-0.98954	-0.00053172	0.27409	0.00014728	-0.71545	-0.00038444	537.345064934444	56.208	1.112	52.914	52.567	53.679	-3.2944					49	21	3	0	0	0	0.026871	1	3638	3638		37.159	5.6293	1	123420			17010	35252	13877	13899	18976	18976					0.14226891881935444
IAGVVAMEPK	10	Unmodified	_IAGVVAMEPK_					0	0	0		tr|A0A7D6VQI0|A0A7D6VQI0_9CLOTEnergy-couplingfactortransporterATP-bindingproteinEcfA2OS=ClostridiumintestinaleOX=36845GN=HZF06_21135PE=3SV=1	tr|A0A7D6VQI0|A0A7D6VQI0_9CLOTEnergy-couplingfactortransporterATP-bindingproteinEcfA2OS=ClostridiumintestinaleOX=36845GN=HZF06_21135PE=3SV=1	tr|A0A7D6VQI0|A0A7D6VQI0_9CLOTEnergy-couplingfactortransporterATP-bindingproteinEcfA2OS=ClostridiumintestinaleOX=36845GN=HZF06_21135PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7891845703125	2	507.786253	1013.55795	-0.34924	-0.00017734	3.337	0.0016945	2.9877	0.0015171	507.78796796196445	47.165	1.8311	44.093	43.604	45.435	-3.0724					104	35	4	0	0	0	0.53885	1	2533	2533		49.442	5.0644	1	3261100			17011	34851	13878	13900	18977	18977					0.05171571230960126
IAGWLVLGASQ	11	Unmodified	_IAGWLVLGASQ_					0	0	0			REV__ENSG00000131446|ENST00000307826|MGAT1	REV__ENSG00000131446|ENST00000307826|MGAT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.8177490234375	2	557.816399	1113.61824	-0.098101	-5.4723E-05	-0.26359	-0.00014703	-0.36169	-0.00020176	557.8162371778843	92.39	1.1112	89.847	89.567	90.678	-2.5425					60	21	4	0	0	0	0.28332	1	8017	8017		69.628	0.78148	1	659630	+		17012	19014	13879	13901	18978	18978					0.06598004885699993
IAHALLPI	8	Unmodified	_IAHALLPI_					0	0	0		tr|A0A7D6W1W6|A0A7D6W1W6_9CLOTAquaporinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04235PE=3SV=1;tr|A0A553SLK2|A0A553SLK2_NIACIAquaporinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20830PE=3SV=1	tr|A0A7D6W1W6|A0A7D6W1W6_9CLOTAquaporinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04235PE=3SV=1	tr|A0A7D6W1W6|A0A7D6W1W6_9CLOTAquaporinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04235PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	424.2738037109375	2	424.273638	846.532724	-1.9717	-0.00083655	0.5456	0.00023148	-1.4261	-0.00060507	424.27377287360156	104.23	0.72405	104.23	103.89	104.62	0					35	16	3	0	0	0	0.64315	1	11666	11666		54.895	0	1	1007000			17013	33731	13880	13902	18979	18979					0.10331884490699395
IAHEILAKSL	10	Unmodified	_IAHEILAKSL_					0	0	0		ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	MULTI-MSMS	OvCa9_classI_Rep3	3	547.8243408203125	2	547.832049	1093.64954	-6.0457	-0.003312	-4.2018	-0.0023019	-10.248	-0.0056139	547.8295905768617	154.78	1.79	153.77	152.92	154.71	-1.0076					93	40	3	0	0	0	0.7759	1	13357	13357		21.96	1.9631	1	69775			17014	7413	13881	13903	18980	18980					0.10646577919806077
IAHFRELY	8	Unmodified	_IAHFRELY_					0	0	0		nc|ENSG00000144559|Q96BW9-2|TAMM41;ENSG00000144559|ENST00000455809|TAMM41;nc|ENSG00000144559|Q96BW9|TAMM41	nc|ENSG00000144559|Q96BW9-2|TAMM41	nc|ENSG00000144559|Q96BW9-2|TAMM41	MULTI-SECPEP	OvCa9_classI_Rep3	3	524.8056030273438	2	524.782359	1047.55016	-1.778	-0.00093307	3.0429	0.0015969	1.2649	0.0006638	524.7843809241377	92.774	0.28266	90.813	90.698	90.981	-1.9617					6	5	2	0	0	0	0.028476	1	5908	5908		79.939	3.0926	1	37060			17015	5158	13882	13904	18981	18981					0.028291800257193245
IAHHNKRKII	10	Unmodified	_IAHHNKRKII_					0	0	0		ENSG00000152291|ENST00000377386|TGOLN2;nc|ENSG00000152291|O43493-5|TGOLN2;nc|ENSG00000152291|O43493-3|TGOLN2;nc|ENSG00000152291|O43493-7|TGOLN2;nc|ENSG00000152291|O43493-6|TGOLN2;nc|ENSG00000152291|O43493-4|TGOLN2	ENSG00000152291|ENST00000377386|TGOLN2	ENSG00000152291|ENST00000377386|TGOLN2	MULTI-SECPEP	OvCa9_classI_Rep3	3	409.6078186035156	3	410.591163	1228.75166	1.4467	0.00059402	0.79014	0.00032443	2.2369	0.00091845	410.5915150573531	110.7	0.72696	109.55	109.14	109.86	-1.1444					20	13	2	0	0	0	0.02706	1	7984	7984		23.523	0	1	11695			17016	5616	13883	13905	18982	18982					0.14643288782076525
IAHLRKVIS	9	Unmodified	_IAHLRKVIS_					0	0	0		ENSG00000232040|ENST00000452236|SCAND3	ENSG00000232040|ENST00000452236|SCAND3	ENSG00000232040|ENST00000452236|SCAND3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.2799682617188	2	518.834926	1035.6553	0.11643	6.0406E-05	1.8063	0.00093716	1.9227	0.00099757	518.8348447727224	83.919	1.4679	81.256	80.926	82.394	-2.6629					56	30	3	0	0	0	0.027462	1	7000	7000		11.511	0	1	209070			17017	9290	13884	13906	18983	18983					0.13889721222130902
IAHVHVRIG	9	Unmodified	_IAHVHVRIG_					0	0	0		tr|A0A553SLW6|A0A553SLW6_NIACIGlobin-coupledsensorproteinOS=NialliacirculansOX=1397GN=CEQ21_21425PE=3SV=1	tr|A0A553SLW6|A0A553SLW6_NIACIGlobin-coupledsensorproteinOS=NialliacirculansOX=1397GN=CEQ21_21425PE=3SV=1	tr|A0A553SLW6|A0A553SLW6_NIACIGlobin-coupledsensorproteinOS=NialliacirculansOX=1397GN=CEQ21_21425PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	501.3033142089844	2	501.303793	1000.59303	-0.60395	-0.00030276	0.045197	2.2657E-05	-0.55875	-0.00028011	501.3036625968001	45.316	1.7944	42.606	42.199	43.993	-2.7097					88	35	4	0	0	0	0.65476	1	2671	2671		25.45	0	1	439250			17018	33771	13885	13907	18984	18984					0.09275994873803484
IAIAERSME	9	Unmodified	_IAIAERSME_					0	0	0		tr|A0A553SF82|A0A553SF82_NIACIROKfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08415PE=3SV=1	tr|A0A553SF82|A0A553SF82_NIACIROKfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08415PE=3SV=1	tr|A0A553SF82|A0A553SF82_NIACIROKfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08415PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.30950927734375	2	510.263142	1018.51173	0.59504	0.00030363	-0.80123	-0.00040884	-0.20619	-0.00010521	510.2628616380595	126.08	0.7879	125.84	125.6	126.39	-0.2359					28	15	3	0	0	0	0.027093	1	12349	12349		120.62	26.615	1	35746			17019	33005	13886	13908	18985	18985					0.0032150632888487962
IAIAERSME	9	Unmodified	_IAIAERSME_					0	0	0		tr|A0A553SF82|A0A553SF82_NIACIROKfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08415PE=3SV=1	tr|A0A553SF82|A0A553SF82_NIACIROKfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08415PE=3SV=1	tr|A0A553SF82|A0A553SF82_NIACIROKfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08415PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	510.263142	1018.51173	1.1174	0.00057015	-1.6465	-0.00084013	-0.5291	-0.00026998	510.2624457614098	127	0.88615	125.93	125.44	126.33	-1.0715	0.01204	-0.00013739	NaN	120.62	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45627			17020	33005	13886	13908							0.0032150632888487962
IAICRPHL	8	Unmodified	_IAICRPHL_					0	0	0		ENST00000567019.1_1_15:43489502-43501706:-|nuORF;nc|ENSG00000166947|P16452-3|EPB42;ENSG00000166947|ENST00000441366|EPB42;nc|ENSG00000166947|P16452-2|EPB42	ENST00000567019.1_1_15:43489502-43501706:-|nuORF	ENST00000567019.1_1_15:43489502-43501706:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	461.77020263671875	2	461.768197	921.521842	0.46718	0.00021573	-0.65998	-0.00030476	-0.19279	-8.9026E-05	461.7682208424689	161.74	0.66452	161.74	161.51	162.18	0					21	12	3	0	0	0	0.64377	1	18973	18973		54.765	8.8127	1	85709			17021	6739	13887	13909	18986	18986					0.05794158844753383
IAIDKILSF	9	Unmodified	_IAIDKILSF_					0	0	0			REV__tr|A0A7D7A615|A0A7D7A615_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08565PE=4SV=1	REV__tr|A0A7D7A615|A0A7D7A615_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08565PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	510.3115539550781	2	510.310418	1018.60628	1.8241	0.00093087	-0.51309	-0.00026183	1.311	0.00066903	510.31010451977795	126.47	1.1933	126.47	125.99	127.18	0					80	25	5	0	0	0	0.019133	1	14629	14629		148.04	8.0725	1	4471500	+		17022	32647	13888	13910	18987	18987					0.09772388142528143
IAIDKILSF	9	Unmodified	_IAIDKILSF_					0	0	0			REV__tr|A0A7D7A615|A0A7D7A615_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08565PE=4SV=1	REV__tr|A0A7D7A615|A0A7D7A615_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08565PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	510.30950927734375	2	510.310418	1018.60628	0.72188	0.00036838	-1.0996	-0.00056114	-0.37773	-0.00019276	510.3097721938746	126.6	2.2195	126.37	126.05	128.27	-0.2359					111	44	5	0	0	0	0.014964	2	12349	12349;12383		153.04	30.86	1	879330	+		17023	32647	13888	13910	18988;18989	18988					0.09772388142528143
IAIDKILSF	9	Unmodified	_IAIDKILSF_					0	0	0			REV__tr|A0A7D7A615|A0A7D7A615_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08565PE=4SV=1	REV__tr|A0A7D7A615|A0A7D7A615_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08565PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	510.3100280761719	2	510.310418	1018.60628	0.95439	0.00048704	-1.1564	-0.00059014	-0.20204	-0.00010311	510.3097290146053	127.58	1.4149	126.49	126.15	127.57	-1.0933					79	27	4	0	0	0	0.022645	2	10008	10008;10014		143.89	30.475	1	805790	+		17024	32647	13888	13910	18990;18991	18990					0.09772388142528143
IAIDKILSF	9	Unmodified	_IAIDKILSF_					0	0	0			REV__tr|A0A7D7A615|A0A7D7A615_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08565PE=4SV=1	REV__tr|A0A7D7A615|A0A7D7A615_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08565PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.3092956542969	2	510.310418	1018.60628	-0.60085	-0.00030662	-0.011383	-5.809E-06	-0.61223	-0.00031243	510.31033129324646	127.85	1.922	126.42	126.09	128.01	-1.4357					108	37	5	0	0	0	0.035142	3	12227	12192;12203;12227		131.03	29.431	1	1190100	+		17025	32647	13888	13910	18992;18993;18994	18994					0.09772388142528143
IAIGLLLTGG	10	Unmodified	_IAIGLLLTGG_					0	0	0			REV__ENSG00000183255|ENST00000330938|PTTG1IP	REV__ENSG00000183255|ENST00000330938|PTTG1IP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.769775390625	2	464.29731	926.580068	0.85181	0.00039549	-1.2406	-0.00057599	-0.38876	-0.0001805	464.29666813463626	84.837	0.77177	82.191	81.838	82.61	-2.6463					25	15	2	0	0	0	0.026639	1	7096	7096		44.117	1.7207	1	55600	+		17026	22351	13889	13911	18995	18995					0.1138411897103424
IAIGLLLTGG	10	Unmodified	_IAIGLLLTGG_					0	0	0			REV__ENSG00000183255|ENST00000330938|PTTG1IP	REV__ENSG00000183255|ENST00000330938|PTTG1IP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	464.29731	926.580068	-0.62276	-0.00028914	0.069163	3.2112E-05	-0.55359	-0.00025703	464.2971824684064	83.781	0.65804	82.22	81.863	82.521	-1.5608	0.087894	0.00019343	NaN	44.117	24	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39160	+		17027	22351	13889	13911							0.1138411897103424
IAIGLLLTGG	10	Unmodified	_IAIGLLLTGG_					0	0	0			REV__ENSG00000183255|ENST00000330938|PTTG1IP	REV__ENSG00000183255|ENST00000330938|PTTG1IP	MULTI-MATCH	OvCa9_classI_Rep3	3		2	464.29731	926.580068	-1.1601	-0.00053865	0.37505	0.00017414	-0.78509	-0.00036452	464.2973396787115	84.246	0.8623	81.985	81.745	82.607	-2.261	-0.14692	0.00047747	NaN	44.117	32	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79523	+		17028	22351	13889	13911							0.1138411897103424
IAIGSFLVASV	11	Unmodified	_IAIGSFLVASV_					0	0	0			REV__ENSG00000175274|ENST00000525680|TP53I11	REV__ENSG00000175274|ENST00000525680|TP53I11	MULTI-MSMS	OvCa99_classI_Rep5	1	538.8211669921875	2	538.82115	1075.62775	-0.75667	-0.00040771	-0.81315	-0.00043814	-1.5698	-0.00084585	538.8205541336522	104.61	0.59032	104.61	104.32	104.91	0					30	13	3	0	0	0	0.58572	1	11730	11730		45.972	1.4412	1	1222400	+		17029	21887	13890	13912	18996	18996					0.0929577317122039
IAIIAYKAIS	10	Unmodified	_IAIIAYKAIS_					0	0	0			REV__tr|A0A553SGW8|A0A553SGW8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_11700PE=4SV=1	REV__tr|A0A553SGW8|A0A553SGW8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_11700PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.9510498046875	2	531.831517	1061.64848	-0.32796	-0.00017442	-2.8789	-0.0015311	-3.2069	-0.0017055	531.829918148627	37.841	0.74572	34.948	34.741	35.487	-2.8925					25	14	2	0	0	0	0.02725	1	1421	1421		15.642	0	1	48937	+		17030	29745	13891	13913	18997	18997					0.12012363550888949
IAIKGVYEST	10	Unmodified	_IAIKGVYEST_					0	0	0			REV__tr|A0A7D6VXS5|A0A7D6VXS5_9CLOTLargeribosomalsubunitassemblyfactorBipAOS=ClostridiumintestinaleOX=36845GN=typAPE=3SV=1	REV__tr|A0A7D6VXS5|A0A7D6VXS5_9CLOTLargeribosomalsubunitassemblyfactorBipAOS=ClostridiumintestinaleOX=36845GN=typAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.8114013671875	2	540.800414	1079.58628	-0.42107	-0.00022772	0.4249	0.00022979	0.0038252	2.0687E-06	541.3030130437135	104.68	0.59522	104.68	104.45	105.04	0					21	13	2	0	0	0	0.027028	1	11746	11746		18.262	0.79408	1	341960	+		17031	31789	13892	13914	18998	18998					0.04966592411892634
IAIKNWAL	8	Unmodified	_IAIKNWAL_					0	0	0			REV__nc|ENSG00000139292|O75473-3|LGR5	REV__nc|ENSG00000139292|O75473-3|LGR5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.76806640625	2	464.78437	927.554188	-1.164	-0.000541	-3.2435	-0.0015075	-4.4075	-0.0020485	464.782717399309	48.57	0.93733	45.463	45.244	46.181	-3.1077					33	17	2	0	0	0	0.028476	1	2693	2693		37.028	0	1	149360	+		17032	15893	13893	13915	18999	18999					0.08751269519416383
IAIKVGLQ	8	Unmodified	_IAIKVGLQ_					0	0	0			REV__tr|A0A553SRJ2|A0A553SRJ2_NIACISugarphosphateisomerase/epimeraseOS=NialliacirculansOX=1397GN=CEQ21_01220PE=4SV=1	REV__tr|A0A553SRJ2|A0A553SRJ2_NIACISugarphosphateisomerase/epimeraseOS=NialliacirculansOX=1397GN=CEQ21_01220PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	421.75390625	2	421.278921	840.543289	-0.085149	-3.5871E-05	0.62618	0.0002638	0.54103	0.00022793	421.2790264901772	86.964	0.49612	84.337	84.103	84.599	-2.6269					11	9	2	0	0	0	0.028476	1	7400	7400		20.482	1.1219	1	8362.3	+		17033	30736	13894	13916	19000	19000					0.11663867145136919
IAILVLWRFKK	11	Unmodified	_IAILVLWRFKK_					0	0	0			REV__tr|A0A553SKE3|A0A553SKE3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_18605PE=4SV=1	REV__tr|A0A553SKE3|A0A553SKE3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_18605PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	462.93658447265625	3	462.970981	1385.89111	0.22266	0.00010309	1.6144	0.00074742	1.8371	0.0008505	462.9715624938052	44.237	0.15004	41.527	41.402	41.552	-2.7097					4	2	2	0	0	0	0.02625	1	2499	2499		13.508	7.5069	1	6843.9	+		17034	30116	13895	13917	19001	19001					0.21360233346717905
IAINISRNL	9	Unmodified	_IAINISRNL_					0	0	0		nc|ENSG00000196072|Q6QNY1-2|BLOC1S2;ENSG00000196072|ENST00000370372|BLOC1S2	nc|ENSG00000196072|Q6QNY1-2|BLOC1S2	nc|ENSG00000196072|Q6QNY1-2|BLOC1S2	MULTI-MSMS	OvCa99_classI_Rep5	1	507.3081359863281	2	507.308741	1012.60293	1.3199	0.00066962	0.55236	0.00028022	1.8723	0.00094984	507.3089326516071	93.528	0.57803	93.528	93.263	93.841	0					31	13	3	0	0	0	0.055627	1	10140	10140		115.49	9.0788	1	4354700			17035	8558	13896	13918	19002	19002					0.0971313808852301
IAIPFLIKL	9	Unmodified	_IAIPFLIKL_					0	0	0		nc|ENSG00000100997|Q8N2K0-3|ABHD12;ENSG00000100997|ENST00000339157|ABHD12;nc|ENSG00000100997|Q8N2K0-2|ABHD12	nc|ENSG00000100997|Q8N2K0-3|ABHD12	nc|ENSG00000100997|Q8N2K0-3|ABHD12	MULTI-MSMS	OvCa99_classI_Rep5	1	514.35009765625	2	514.349346	1026.68414	0.83317	0.00042854	1.1455	0.00058919	1.9787	0.0010177	514.3498091957744	154.03	1.1415	154.03	153.74	154.88	0					41	22	3	0	0	0	0.19716	2	18037	18037;18061		76.847	8.3619	1	247200			17036	2132	13897	13919	19003;19004	19003					0.17186445798552086
IAIPIFSGV	9	Unmodified	_IAIPIFSGV_					0	0	0		ENST00000496015.5_1_14:74755930-74759615:-|nuORF;ENST00000553745.5_1_14:74753379-74769587:-|nuORF;ENSG00000119688|ENST00000356924|ABCD4	ENST00000496015.5_1_14:74755930-74759615:-|nuORF	ENST00000496015.5_1_14:74755930-74759615:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	458.5896301269531	2	458.778754	915.542954	-0.52635	-0.00024148	-4.0395	-0.0018532	-4.5658	-0.0020947	458.77676637541646	54.362	0.84703	51.548	51.275	52.122	-2.8139					29	16	2	0	0	0	0.027449	1	3696	3696		24.203	0	1	61185			17037	3383	13898	13920	19005	19005					0.08180447425286275
IAIPVPIKGI	10	Unmodified	_IAIPVPIKGI_					0	0	0		ENSG00000135914|ENST00000258400|HTR2B	ENSG00000135914|ENST00000258400|HTR2B	ENSG00000135914|ENST00000258400|HTR2B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.3092956542969	2	510.844428	1019.6743	0.11711	5.9824E-05	-1.0508	-0.00053679	-0.93368	-0.00047696	510.84387118556873	128.4	1.2199	126.94	126.42	127.64	-1.4565					37	23	2	0	0	0	0.026982	1	12227	12227		38.806	19.446	1	11500			17038	4428	13899	13921	19006	19006					0.1652525779318239
IAIQNSHSL	9	Unmodified	_IAIQNSHSL_					0	0	0		CCDC62|p.D576N|1|0.31|ENSG00000130783|chr12:122806170-122806170|G/A|missense_variant	CCDC62|p.D576N|1|0.31|ENSG00000130783|chr12:122806170-122806170|G/A|missense_variant	CCDC62|p.D576N|1|0.31|ENSG00000130783|chr12:122806170-122806170|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	491.76947021484375	2	491.769448	981.524344	0.73066	0.00035931	-1.2949	-0.00063677	-0.5642	-0.00027746	491.7687953210719	68.431	1.7149	64.941	64.381	66.096	-3.4902					96	34	4	0	0	0	0.062324	2	5114	5114;5128		111.65	15.458	1	3327400			17039	195	13900	13922	19007;19008	19007					0.03284285783422547
IAIRLGKT	8	Unmodified	_IAIRLGKT_					0	0	0		nc|ENSG00000115155|Q9HC10-2|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;OTOF|p.G1754Efs*4|1|0.04|ENSG00000115155|chr2:26462109-26462113|CTCCC/-|frameshift_variant	nc|ENSG00000115155|Q9HC10-2|OTOF	nc|ENSG00000115155|Q9HC10-2|OTOF	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.2914733886719	2	436.28982	870.565087	2.865	0.00125	1.6954	0.00073969	4.5604	0.0019896	436.29039727042573	135.9	2.0052	134.35	134.01	136.01	-1.5437					90	40	3	0	0	0	0.73626	1	13189	13189		33.516	1.5607	1	94245			17040	14974	13901	13923	19009	19009					0.12462671893706556
IAISRTPVL	9	Unmodified	_IAISRTPVL_					0	0	0		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	MULTI-MSMS	OvCa99_classI_Rep5	1	485.3100280761719	2	485.30821	968.601866	3.344	0.0016228	-1.0725	-0.00052047	2.2715	0.0011024	485.3075879497325	88.489	0.8326	88.489	88.13	88.962	0					57	19	4	0	0	0	0.022645	3	9397	9397;9424;9458		143.89	35.799	1	12064000			17041	6590	13902	13924	19010;19011;19012	19010					0.11630923719599195
IAIVARAAD	9	Unmodified	_IAIVARAAD_					0	0	0			REV__tr|A0A553SF14|A0A553SF14_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_08080PE=4SV=1	REV__tr|A0A553SF14|A0A553SF14_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_08080PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	450.2690734863281	2	450.269084	898.523616	1.9084	0.0008593	-1.9638	-0.00088423	-0.055366	-2.4929E-05	450.26807810544716	61.38	1.5642	58.311	57.573	59.137	-3.0685					65	43	2	0	0	0	0.56889	1	2097	2097		35.618	0	1	26008	+		17042	29526	13903	13925	19013	19013					0.07029491134358068
IAIVSVIIPI	10	Unmodified	_IAIVSVIIPI_					0	0	0			REV__tr|A0A7D6VS67|A0A7D6VS67_9CLOTZf-HC2domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08240PE=4SV=1	REV__tr|A0A7D6VS67|A0A7D6VS67_9CLOTZf-HC2domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08240PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.3329467773438	2	519.352086	1036.68962	0.69665	0.00036181	3.5365	0.0018367	4.2332	0.0021985	519.3537732941046	71.111	0.20158	68.392	68.265	68.466	-2.7196					5	3	2	0	0	0	0.026956	1	3288	3288		34.173	5.023	1	5617.3	+		17043	31473	13904	13926	19014	19014					0.1727412459038078
IAIVVRKPS	9	Unmodified	_IAIVVRKPS_					0	0	0		ENST00000399070.3_2_18:32886564-32887857:+|nuORF	ENST00000399070.3_2_18:32886564-32887857:+|nuORF	ENST00000399070.3_2_18:32886564-32887857:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	491.82275390625	2	491.824027	981.633501	-0.60972	-0.00029987	0.45985	0.00022617	-0.14986	-7.3707E-05	491.82410532808257	68.139	1.6844	65.478	65.09	66.774	-2.661					84	33	4	0	0	0	0.33652	1	5351	5351		58.782	9.3404	1	431140			17044	11380	13905	13927	19015	19015					0.1419491647355926
IAIYPVAENV	10	Unmodified	_IAIYPVAENV_					0	0	0		tr|A0A7D6ZYP2|A0A7D6ZYP2_9CLOTN5-carboxyaminoimidazoleribonucleotidesynthaseOS=ClostridiumintestinaleOX=36845GN=purKPE=3SV=1	tr|A0A7D6ZYP2|A0A7D6ZYP2_9CLOTN5-carboxyaminoimidazoleribonucleotidesynthaseOS=ClostridiumintestinaleOX=36845GN=purKPE=3SV=1	tr|A0A7D6ZYP2|A0A7D6ZYP2_9CLOTN5-carboxyaminoimidazoleribonucleotidesynthaseOS=ClostridiumintestinaleOX=36845GN=purKPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.764892578125	2	544.802957	1087.59136	-0.49059	-0.00026728	-1.1752	-0.00064026	-1.6658	-0.00090754	544.8022012341684	48.095	0.43526	48.095	47.897	48.332	0					15	9	2	0	0	0	0.026669	1	3485	3485		57.811	28.662	1	162850			17045	35924	13906	13928	19016	19016					0.05106896274514838
IAIYYNVII	9	Unmodified	_IAIYYNVII_					0	0	0		ENSG00000165970|ENST00000525748|SLC6A5;nc|ENSG00000165970|Q9Y345-3|SLC6A5;nc|ENSG00000165970|Q9Y345-2|SLC6A5	ENSG00000165970|ENST00000525748|SLC6A5	ENSG00000165970|ENST00000525748|SLC6A5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.782958984375	2	541.318243	1080.62193	-2.0018	-0.0010836	-1.802	-0.00097545	-3.8037	-0.002059	541.3173103849153	72.755	0.53384	69.359	69.009	69.543	-3.3961					12	10	2	0	0	0	0.027462	1	5588	5588		25.45	0	1	25200			17046	6622	13907	13929	19017	19017					0.0848467465957583
IAKAAAFLPV	10	Unmodified	_IAKAAAFLPV_					0	0	0			REV__tr|A0A553SJE4|A0A553SJE4_NIACIAcyl-CoAdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16650PE=3SV=1	REV__tr|A0A553SJE4|A0A553SJE4_NIACIAcyl-CoAdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16650PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.2486572265625	2	500.813128	999.611703	-0.40912	-0.00020489	-3.8311	-0.0019187	-4.2403	-0.0021236	500.810896331698	44.728	0.49343	44.728	44.484	44.977	0					16	10	2	0	0	0	0.026982	1	3049	3049		30.504	0	1	315290	+		17047	30001	13908	13930	19018	19018					0.11188111724970895
IAKAIRVDI	9	Unmodified	_IAKAIRVDI_					0	0	0		tr|A0A7D6VT68|A0A7D6VT68_9CLOTTransketolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01655PE=4SV=1	tr|A0A7D6VT68|A0A7D6VT68_9CLOTTransketolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01655PE=4SV=1	tr|A0A7D6VT68|A0A7D6VT68_9CLOTTransketolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01655PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.8319091796875	2	499.821484	997.628415	-0.2739	-0.0001369	0.90467	0.00045217	0.63077	0.00031527	499.8218515150606	72.933	0.79189	70.446	70.232	71.024	-2.4873					30	15	3	0	0	0	0.027462	1	3509	3509		44.117	5.3107	1	28311			17048	35091	13909	13931	19019	19019					0.1295061261095043
IAKAKPAWTT	10	Unmodified	_IAKAKPAWTT_					0	0	0			REV__tr|A0A7D6VVN3|A0A7D6VVN3_9CLOT1,4-alpha-glucanbranchingenzymeGlgBOS=ClostridiumintestinaleOX=36845GN=glgBPE=3SV=1	REV__tr|A0A7D6VVN3|A0A7D6VVN3_9CLOT1,4-alpha-glucanbranchingenzymeGlgBOS=ClostridiumintestinaleOX=36845GN=glgBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	543.8178100585938	2	543.818941	1085.62333	-1.415	-0.00076952	0.57994	0.00031538	-0.83509	-0.00045414	543.8193248422483	102.3	1.5803	101.62	101.24	102.82	-0.68459					104	31	5	0	0	0	0.15262	1	9411	9411		101.6	24.827	1	1306500	+		17049	31726	13910	13932	19020	19020					0.08394308748302137
IAKAKPAWTT	10	Unmodified	_IAKAKPAWTT_					0	0	0			REV__tr|A0A7D6VVN3|A0A7D6VVN3_9CLOT1,4-alpha-glucanbranchingenzymeGlgBOS=ClostridiumintestinaleOX=36845GN=glgBPE=3SV=1	REV__tr|A0A7D6VVN3|A0A7D6VVN3_9CLOT1,4-alpha-glucanbranchingenzymeGlgBOS=ClostridiumintestinaleOX=36845GN=glgBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	543.8180541992188	2	543.818941	1085.62333	-0.007374	-4.0101E-06	-0.95373	-0.00051865	-0.9611	-0.00052267	543.8184281162435	103.22	1.4687	101.79	101.45	102.92	-1.4347					92	27	4	0	0	0	0.24425	2	7126	7126;7144		87.696	13.722	1	1651100	+		17050	31726	13910	13932	19021;19022	19021					0.08394308748302137
IAKEKAGII	9	Unmodified	_IAKEKAGII_					0	0	0		tr|A0A7D6VY97|A0A7D6VY97_9CLOTtetrahydrofolatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14960PE=3SV=1	tr|A0A7D6VY97|A0A7D6VY97_9CLOTtetrahydrofolatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14960PE=3SV=1	tr|A0A7D6VY97|A0A7D6VY97_9CLOTtetrahydrofolatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14960PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	471.8039855957031	2	471.80276	941.590967	-0.2887	-0.00013621	0.12171	5.7422E-05	-0.16699	-7.8787E-05	471.80266367959996	55.775	0.9421	55.775	55.48	56.422	0					59	22	4	0	0	0	0.075543	2	4594	4568;4594		104.06	13.687	1	4182800			17051	35324	13911	13933	19023;19024	19024					0.11783521345330428
IAKEKAGII	9	Unmodified	_IAKEKAGII_					0	0	0		tr|A0A7D6VY97|A0A7D6VY97_9CLOTtetrahydrofolatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14960PE=3SV=1	tr|A0A7D6VY97|A0A7D6VY97_9CLOTtetrahydrofolatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14960PE=3SV=1	tr|A0A7D6VY97|A0A7D6VY97_9CLOTtetrahydrofolatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14960PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	471.80276	941.590967	-0.51763	-0.00024422	-4.2383	-0.0019996	-4.7559	-0.0022439	471.803046838964	58.545	0.29825	55.765	55.639	55.937	-2.7801	-0.0050257	-0.0039373	NaN	104.06	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3923.5			17052	35324	13911	13933							0.11783521345330428
IAKFMGRPRKC	11	Carbamidomethyl (C)	_IAKFMGRPRKC(Carbamidomethyl (C))_	IAKFMGRPRKC(1)		IAKFMGRPRKC(49)		0	1	0		ENST00000414857.5_2_2:203776999-203782638:+|nuORF	ENST00000414857.5_2_2:203776999-203782638:+|nuORF	ENST00000414857.5_2_2:203776999-203782638:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	455.25225830078125	3	455.253165	1362.73766	0.40065	0.0001824	-3.7613	-0.0017123	-3.3606	-0.0015299	455.251338145072	62.959	0.86573	62.959	62.741	63.607	0					43	21	4	0	0	0	0.55686	1	5641	5641		48.602	8.5862	1	4628600			17053	11584	13912	13934	19025	19025	121				0.07080551967123938
IAKGEAAYLL	10	Unmodified	_IAKGEAAYLL_					0	0	0			REV__tr|A0A553SQ74|A0A553SQ74_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_22395PE=4SV=1	REV__tr|A0A553SQ74|A0A553SQ74_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_22395PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	524.805419921875	2	524.8055	1047.59645	0.75625	0.00039688	-1.5948	-0.00083698	-0.83859	-0.0004401	524.8046333600537	91.954	3.2465	90.719	90.272	93.519	-1.2355					182	62	5	0	0	0	0.12609	1	8187	8187		107.01	0	1	5304800	+		17054	30611	13913	13935	19026	19026					0.07455200137110296
IAKGHKRA	8	Unmodified	_IAKGHKRA_					0	0	0			REV__tr|A0A553SHL2|A0A553SHL2_NIACIInosine-5'-monophosphatedehydrogenaseOS=NialliacirculansOX=1397GN=guaBPE=3SV=1	REV__tr|A0A553SHL2|A0A553SHL2_NIACIInosine-5'-monophosphatedehydrogenaseOS=NialliacirculansOX=1397GN=guaBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	440.7528991699219	2	440.777411	879.540269	0.91488	0.00040326	-3.5157	-0.0015496	-2.6008	-0.0011464	440.7745436468325	40.76	0.3556	40.76	40.526	40.881	0					11	7	2	0	0	0	0.028476	1	2476	2476		25.45	18.257	1	71122	+		17055	29815	13914	13936	19027	19027					0.09568036810992453
IAKGHMIT	8	Unmodified	_IAKGHMIT_					0	0	0			REV__STXBP5L|p.E352Kfs*10|1|0.13|ENSG00000145087|chr3:121223096-121223096|A/-|frameshift_variant	REV__STXBP5L|p.E352Kfs*10|1|0.13|ENSG00000145087|chr3:121223096-121223096|A/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	435.76092529296875	2	435.746931	869.479308	1.2331	0.0005373	2.3029	0.0010035	3.5359	0.0015408	435.74800267085	45.563	0.29347	45.563	45.289	45.582	0					9	6	2	0	0	0	0.028476	1	3162	3162		52.299	15.14	1	71606	+		17056	19950	13915	13937	19028	19028					0.039347637165292326
IAKHWTSII	9	Unmodified	_IAKHWTSII_					0	0	0			REV__nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27	REV__nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27	MULTI-SECPEP	OvCa9_classI_Rep3	3	534.7781372070312	2	534.813659	1067.61277	0.13654	7.3025E-05	-1.4908	-0.00079731	-1.3543	-0.00072428	534.8124599174714	75.975	1.3483	73.604	73.367	74.715	-2.3715					47	25	4	0	0	0	0.027402	1	3889	3889		66.429	10.925	1	122550	+		17057	20608	13916	13938	19029	19029					0.08166326093919452
IAKKKKLK	8	Unmodified	_IAKKKKLK_					0	0	0			REV__ENST00000336735.8_1_14:81942796-81942856:-|nuORF	REV__ENST00000336735.8_1_14:81942796-81942856:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.7803955078125	2	478.852587	955.690622	0.1504	7.2021E-05	3.2188	0.0015414	3.3693	0.0016134	478.85398767576305	75.074	0.19014	71.843	71.773	71.963	-3.2308					5	3	2	0	0	0	0.028476	1	5893	5893		37.028	0	1	9657.3	+		17058	24589	13917	13939	19030	19030					0.2110038374994474
IAKKYVDIV	9	Unmodified	_IAKKYVDIV_					0	0	0			REV__tr|A0A7D6VR14|A0A7D6VR14_9CLOTU32familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23535PE=4SV=1	REV__tr|A0A7D6VR14|A0A7D6VR14_9CLOTU32familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23535PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	524.8056030273438	2	524.823692	1047.63283	-1.7459	-0.0009163	0.54757	0.00028738	-1.1983	-0.00062892	524.8239945511748	93.186	1.1452	91.225	90.79	91.935	-1.9617					37	22	2	0	0	0	0.027181	1	5908	5908		107.01	10.817	1	35272	+		17059	31377	13918	13940	19031	19031					0.11092077033845271
IAKLDKLLN	9	Unmodified	_IAKLDKLLN_					0	0	0		ENSG00000122735|ENST00000242317|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.808349609375	2	514.329142	1026.64373	0.23818	0.0001225	-0.35168	-0.00018088	-0.11349	-5.8373E-05	514.3288202057419	110.02	2.2717	109.85	109.36	111.64	-0.17237					107	45	3	0	0	0	0.027441	1	10422	10422		45.952	0	1	62740			17060	3554	13919	13941	19032	19032					0.13147479408166873
IAKLEVIR	8	Unmodified	_IAKLEVIR_					0	0	0		tr|A0A553SP17|A0A553SP17_NIACILargeribosomalsubunitproteinbL19OS=NialliacirculansOX=1397GN=rplSPE=3SV=1	tr|A0A553SP17|A0A553SP17_NIACILargeribosomalsubunitproteinbL19OS=NialliacirculansOX=1397GN=rplSPE=3SV=1	tr|A0A553SP17|A0A553SP17_NIACILargeribosomalsubunitproteinbL19OS=NialliacirculansOX=1397GN=rplSPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	471.309326171875	2	471.310752	940.606951	-0.32194	-0.00015174	-3.3898	-0.0015976	-3.7117	-0.0017494	471.30924086054455	24.361	1.905	24.361	24.137	26.042	0					86	37	5	0	0	0	0.62934	2	430	430;478		57.811	9.8957	1	6134900			17061	33994	13920	13942	19033;19034	19033					0.13427227582235446
IAKLTVETL	9	Unmodified	_IAKLTVETL_					0	0	0			REV__nc|ENSG00000116127|Q8TCU4-2|ALMS1	REV__nc|ENSG00000116127|Q8TCU4-2|ALMS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.7350158691406	2	494.307875	986.601197	1.3742	0.00067927	-0.30788	-0.00015219	1.0663	0.00052708	494.3074279343926	130.35	0.42761	130.35	130.1	130.53	0					14	8	2	0	0	0	0.027462	1	15120	15120		21.96	1.013	1	45097	+		17062	18284	13921	13943	19035	19035					0.10736084279915303
IAKNVDGNCD	10	Unmodified	_IAKNVDGNCD_					0	0	0			REV__ENST00000480885.5_1_9:33996205-33996328:-|nuORF	REV__ENST00000480885.5_1_9:33996205-33996328:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.8058471679688	2	524.740031	1047.46551	0.55448	0.00029096	4.1513	0.0021783	4.7058	0.0024693	524.7420239978214	92.42	0.317	91.252	91.129	91.446	-1.168					6	5	2	0	0	0	0.026464	1	8212	8212		60.118	0	1	7204.6	+		17063	19430	13922	13944	19036	19036					-0.056325585732110994
IAKPIRPGQ	9	Unmodified	_IAKPIRPGQ_					0	0	0		ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	ENSG00000170759|ENST00000302418|KIF5B	MULTI-SECPEP	OvCa9_classI_Rep2	2	490.2763671875	2	490.306001	978.597449	-1.1526	-0.0005651	-2.2215	-0.0010892	-3.374	-0.0016543	490.3045866183152	85.45	0.54257	83.959	83.554	84.097	-1.4906					13	10	2	0	0	0	0.027462	1	7371	7371		30.504	6.3009	1	9915.9			17064	7132	13923	13945	19037	19037					0.1072945929670368
IAKPSDVLTI	10	Unmodified	_IAKPSDVLTI_					0	0	0		tr|A0A7D6VND8|A0A7D6VND8_9CLOT30SribosomalproteinS1OS=ClostridiumintestinaleOX=36845GN=rpsAPE=4SV=1	tr|A0A7D6VND8|A0A7D6VND8_9CLOT30SribosomalproteinS1OS=ClostridiumintestinaleOX=36845GN=rpsAPE=4SV=1	tr|A0A7D6VND8|A0A7D6VND8_9CLOT30SribosomalproteinS1OS=ClostridiumintestinaleOX=36845GN=rpsAPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.8189086914062	2	528.818607	1055.62266	0.74463	0.00039377	-0.83544	-0.0004418	-0.090816	-4.8025E-05	528.8181216301339	138.8	0.89726	137.27	137.01	137.91	-1.5284					29	17	2	0	0	0	0.45822	1	13514	13514		60.118	3.6845	1	48587			17065	34695	13924	13946	19038	19038					0.09707469308614236
IAKQVNRT	8	Unmodified	_IAKQVNRT_					0	0	0			REV__ENST00000514829.5_1_4:187065816-187079198:+|nuORF	REV__ENST00000514829.5_1_4:187065816-187079198:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	465.2810974121094	2	465.279983	928.545414	1.32	0.00061419	1.0448	0.00048615	2.3649	0.0011003	465.2803136422764	143.93	1.0327	143.93	143.56	144.6	0					32	20	2	0	0	0	0.73494	1	16823	16823		34.173	1.3601	1	49682	+		17066	17952	13925	13947	19039	19039					0.07828295882939074
IAKQVNRT	8	Unmodified	_IAKQVNRT_					0	0	0			REV__ENST00000514829.5_1_4:187065816-187079198:+|nuORF	REV__ENST00000514829.5_1_4:187065816-187079198:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	465.279983	928.545414	1.32	0.00061419	1.0448	0.00048615	2.3649	0.0011003	465.2803136422764	143.93	1.0327	143.93	143.56	144.6	0	0	0	NaN	34.173	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49682	+		17067	17952	13925	13947							0.07828295882939074
IAKSPHSTV	9	Unmodified	_IAKSPHSTV_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-MSMS	OvCa99_classI_Rep5	1	470.2671203613281	2	470.266542	938.51853	-0.38831	-0.00018261	0.67404	0.00031698	0.28574	0.00013437	470.26677872425125	49.296	0.34321	49.296	49.119	49.462	0					14	7	2	0	0	0	0.31747	1	3674	3674		60.972	0.67798	1	462850			17068	8615	13926	13948	19040	19040					0.04681187271773979
IAKTGSGKTI	10	Unmodified	_IAKTGSGKTI_					0	0	0		nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46;ENST00000505592.5_1_5:134118651-134120263:+|nuORF;ENST00000509178.5_1_5:134117763-134126202:+|nuORF	nc|ENSG00000145833|Q7L014|DDX46	nc|ENSG00000145833|Q7L014|DDX46	MULTI-MSMS	OvCa9_classI_Rep3	3	488.2986145019531	2	488.295299	974.576045	1.033	0.00050441	2.9978	0.0014638	4.0308	0.0019682	488.29662142573915	124.3	1.51	123.27	122.82	124.33	-1.0377					67	28	3	0	0	0	0.39172	1	9632	9632		69.628	0.8408	1	248350			17069	5247	13927	13949	19041	19041					0.08774029477331169
IAKWLDSSLLV	11	Unmodified	_IAKWLDSSLLV_					0	0	0			REV__ENSG00000162949|ENST00000295055|CAPN13	REV__ENSG00000162949|ENST00000295055|CAPN13	MULTI-MSMS	OvCa9_classI_Rep4_	4	623.3668212890625	2	622.866089	1243.71762	4.0056	0.002495	-3.7722	-0.0023496	0.23345	0.00014541	622.8636174332638	131.98	1.7037	130.48	130.08	131.78	-1.5014					90	33	4	0	0	0	0.58572	1	12676	12676		45.972	9.5255	1	330550	+		17070	20795	13928	13950	19042	19042					0.10551402779788077
IAKYIDETI	9	Unmodified	_IAKYIDETI_					0	0	0			REV__tr|A0A7D6VPY1|A0A7D6VPY1_9CLOTDUF2508familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00640PE=4SV=1	REV__tr|A0A7D6VPY1|A0A7D6VPY1_9CLOTDUF2508familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00640PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.31884765625	2	533.294965	1064.57538	-2.1575	-0.0011506	2.021	0.0010778	-0.13648	-7.2785E-05	533.2959269078692	72.168	1.6037	68.712	68.412	70.015	-3.4563					61	32	2	0	0	0	0.027093	1	5552	5552		96.19	0	1	500960	+		17071	31288	13929	13951	19043	19043					0.04567190037619184
IAKYKQLIDH	10	Unmodified	_IAKYKQLIDH_					0	0	0		tr|A0A553SUH5|A0A553SUH5_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_07015PE=4SV=1	tr|A0A553SUH5|A0A553SUH5_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_07015PE=4SV=1	tr|A0A553SUH5|A0A553SUH5_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_07015PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	410.22821044921875	3	410.239796	1227.69756	1.3725	0.00056304	3.9364	0.0016149	5.3088	0.0021779	410.2411054070622	37.987	0.79427	35.094	34.841	35.635	-2.8925					28	14	2	0	0	0	0.027001	1	1426	1426		42.864	10.83	1	34383			17072	34611	13930	13952	19044	19044					0.09281651839842198
IAKYTEWPTE	10	Unmodified	_IAKYTEWPTE_					0	0	0		nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12;ENST00000529970.5_1_11:120278459-120348246:+|nuORF	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	MULTI-MSMS	OvCa99_classI_Rep5	1	413.2090148925781	3	413.208161	1236.60265	0.4768	0.00019702	2.946	0.0012173	3.4228	0.0014143	413.2092664387834	29.513	0.49757	29.513	29.337	29.835	0					18	9	3	0	0	0	0.67987	1	1064	1064		32.751	3.5805	1	187140			17073	8658	13931	13953	19045	19045					-0.006183264219998819
IALALYLCTD	10	Unmodified	_IALALYLCTD_					0	0	0			REV__nc|ENSG00000141338|O94911-1|ABCA8	REV__nc|ENSG00000141338|O94911-1|ABCA8	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.8042602539062	2	548.291368	1094.56818	1.8771	0.0010292	-3.908	-0.0021427	-2.0309	-0.0011135	548.2898613750402	110.81	0.39839	110.81	110.67	111.07	0					15	8	3	0	0	0	0.026982	1	12566	12566		23.042	1.3402	1	235410	+		17074	19728	13932	13954	19046	19046					0.02468134165542324
IALAQDRLL	9	Unmodified	_IALAQDRLL_					0	0	0			REV__ENSG00000204510|ENST00000697200|PRAMEF7;REV__ENSG00000204480|ENST00000376101|PRAMEF19	REV__ENSG00000204480|ENST00000376101|PRAMEF19	MULTI-MSMS	OvCa9_classI_Rep2	2	506.8113708496094	2	506.811116	1011.60768	-0.19535	-9.9005E-05	-0.46138	-0.00023383	-0.65673	-0.00033284	506.81088140623655	72.437	2.0408	69.929	69.537	71.578	-2.5071					74	38	2	0	0	0	0.074342	1	5873	5873		104.75	3.1458	1	1427900	+		17075	23159;22284	13933	13955	19047	19047					0.10234022231293238
IALAQDRLL	9	Unmodified	_IALAQDRLL_					0	0	0			REV__ENSG00000204510|ENST00000697200|PRAMEF7;REV__ENSG00000204480|ENST00000376101|PRAMEF19	REV__ENSG00000204480|ENST00000376101|PRAMEF19	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.8128662109375	2	506.811116	1011.60768	-1.0201	-0.00051702	-0.14225	-7.2094E-05	-1.1624	-0.00058911	506.81103376209654	73.738	1.9166	70.341	69.93	71.847	-3.3961					71	39	2	0	0	0	0.074342	1	5732	5732		104.75	10.74	1	1698900	+		17076	23159;22284	13933	13955	19048	19048					0.10234022231293238
IALAQYQPP	9	Unmodified	_IALAQYQPP_					0	0	0			REV__tr|A0A553SUE7|A0A553SUE7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_06860PE=4SV=1	REV__tr|A0A553SUE7|A0A553SUE7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_06860PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.7944641113281	2	500.776742	999.538931	-0.31818	-0.00015934	1.8509	0.00092691	1.5328	0.00076757	500.77777356657265	108.41	1.3361	108.18	107.78	109.11	-0.22498					42	26	2	0	0	0	0.027415	1	10199	10199		52.299	4.3836	1	68679	+		17077	31070	13934	13956	19049	19049					0.03914357931569157
IALDHCLLL	9	Unmodified	_IALDHCLLL_					0	0	0		ENST00000537045.5_1_22:19026088-19026367:-|nuORF	ENST00000537045.5_1_22:19026088-19026367:-|nuORF	ENST00000537045.5_1_22:19026088-19026367:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.3121032714844	2	505.788795	1009.56304	-0.60159	-0.00030428	-2.4574	-0.0012429	-3.059	-0.0015472	506.28998216791365	83.169	0.24341	80.486	80.368	80.612	-2.683					5	4	2	0	0	0	0.027462	1	6917	6917		25.45	0	1	10176			17078	13401	13935	13957	19050	19050					0.05863875093587012
IALDLAARGL	10	Unmodified	_IALDLAARGL_					0	0	0			REV__nc|ENSG00000145014|Q2T9K0-4|TMEM44	REV__nc|ENSG00000145014|Q2T9K0-4|TMEM44	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.81182861328125	2	506.811116	1011.60768	-0.91945	-0.00046599	-1.1845	-0.0006003	-2.1039	-0.0010663	506.81048510289196	101.22	3.3613	98.954	98.29	101.65	-2.2665					172	65	4	0	0	0	0.32926	1	9104	9104		77.318	6.0219	1	2669900	+		17079	28911	13936	13958	19051	19051					0.10234022231293238
IALDTLKY	8	Unmodified	_IALDTLKY_					0	0	0			REV__tr|A0A553SL90|A0A553SL90_NIACI3'-5'exonucleaseDinGOS=NialliacirculansOX=1397GN=dinGPE=3SV=1	REV__tr|A0A553SL90|A0A553SL90_NIACI3'-5'exonucleaseDinGOS=NialliacirculansOX=1397GN=dinGPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	467.7895202636719	2	468.773668	935.532783	0.99158	0.00046483	-1.2779	-0.00059905	-0.28632	-0.00013422	468.77284053504354	114.4	0.68056	113	112.73	113.41	-1.3977					17	12	2	0	0	0	0.028476	1	10596	10596		13.775	0.81615	1	21131	+		17080	30201	13937	13959	19052	19052					0.06243839700039189
IALEPEAASI	10	Unmodified	_IALEPEAASI_					0	0	0		ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.7934265136719	2	507.279315	1012.54408	-0.40202	-0.00020394	1.166	0.00059149	0.76398	0.00038755	507.27973344450146	87.051	1.0492	84.424	84.005	85.055	-2.6269					39	20	3	0	0	0	0.026639	1	7360	7360		44.117	0	1	218390			17081	6606	13938	13960	19053	19053					0.03830617003507086
IALERKQN	8	Unmodified	_IALERKQN_					0	0	0			REV__ENST00000506275.1_1_5:52229685-52248278:+|nuORF	REV__ENST00000506275.1_1_5:52229685-52248278:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.760009765625	2	486.285266	970.555979	0.10893	5.2969E-05	0.89728	0.00043633	1.0062	0.0004893	486.2855855010647	62.351	0.49628	62.351	62.165	62.661	0					18	11	3	0	0	0	0.028476	1	5590	5590		57.811	0	1	319140	+		17082	23277	13939	13961	19054	19054					0.06952278537369239
IALFRDLSI	9	Unmodified	_IALFRDLSI_					0	0	0			REV__GPR55|p.M117L|1|0.12|ENSG00000135898|chr2:230910614-230910614|T/G|missense_variant	REV__GPR55|p.M117L|1|0.12|ENSG00000135898|chr2:230910614-230910614|T/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.3340454101562	2	524.313492	1046.61243	1.5125	0.00079303	0.19388	0.00010165	1.7064	0.00089468	524.3135823206221	129.14	0.56181	129.14	128.84	129.4	0					18	11	2	0	0	0	0.027447	1	14954	14954		66.429	8.1994	1	51962	+		17083	28163	13940	13962	19055	19055					0.09098906374038052
IALGWLEDT	9	Unmodified	_IALGWLEDT_					0	0	0			REV__ENST00000554111.1_1_14:100376608-100381157:+|nuORF	REV__ENST00000554111.1_1_14:100376608-100381157:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.3138427734375	2	509.266207	1016.51786	-0.33805	-0.00017216	-2.8966	-0.0014752	-3.2347	-0.0016473	509.26443169781953	69.563	0.69913	69.563	69.184	69.883	0					42	16	3	0	0	0	0.027462	1	6605	6605		18.324	3.4595	1	1332300	+		17084	16819	13941	13963	19056	19056					0.010263478320553077
IALHSKGRKFE	11	Unmodified	_IALHSKGRKFE_					0	0	0			REV__ENSG00000168763|ENST00000305510|CNNM3	REV__ENSG00000168763|ENST00000305510|CNNM3	MULTI-MSMS	OvCa9_classI_Rep3	3	429.2519226074219	3	429.250695	1284.73025	-0.56405	-0.00024212	0.10645	4.5692E-05	-0.45761	-0.00019643	429.25076321988007	91.88	1.9808	89.856	89.534	91.514	-2.0241					135	40	5	0	0	0	0.62666	3	5801	5782;5788;5801		42.243	5.9249	1	3207800	+		17085	21399	13942	13964	19057;19058;19059	19059					0.09927858962691971
IALHSKGRKFE	11	Unmodified	_IALHSKGRKFE_					0	0	0			REV__ENSG00000168763|ENST00000305510|CNNM3	REV__ENSG00000168763|ENST00000305510|CNNM3	MULTI-MSMS	OvCa9_classI_Rep4_	4	429.2515563964844	3	429.250695	1284.73025	-0.16477	-7.0726E-05	-0.40738	-0.00017487	-0.57215	-0.0002456	429.25055952438805	92.339	1.6895	89.796	89.415	91.104	-2.5425					123	33	5	0	0	0	0.6511	1	8028	8028		40.015	4.8634	1	2879600	+		17086	21399	13942	13964	19060	19060					0.09927858962691971
IALISDLDI	9	Unmodified	_IALISDLDI_					0	0	0			REV__tr|A0A553SF93|A0A553SF93_NIACISugarphosphateisomerase/epimeraseOS=NialliacirculansOX=1397GN=CEQ21_08485PE=4SV=1	REV__tr|A0A553SF93|A0A553SF93_NIACISugarphosphateisomerase/epimeraseOS=NialliacirculansOX=1397GN=CEQ21_08485PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	486.7817687988281	2	486.784233	971.553913	-0.097442	-4.7433E-05	-3.2568	-0.0015853	-3.3542	-0.0016328	486.78173231785576	73.585	1.8326	71.185	70.167	72	-2.3999					51	34	2	0	0	0	0.38529	1	5989	5989		53.351	0	1	551590	+		17087	29550	13943	13965	19061	19061					0.0669980500889551
IALIVMDM	8	Oxidation (M)	_IALIVMDM(Oxidation (M))_		IALIVM(0.003)DM(0.997)		IALIVM(-26)DM(26)	0	0	1			REV__ENSG00000203685|ENST00000366788|STUM	REV__ENSG00000203685|ENST00000366788|STUM	MULTI-MSMS	OvCa99_classI_Rep5	1	461.2441711425781	2	461.242832	920.471111	-0.47298	-0.00021816	3.9203	0.0018082	3.4473	0.0015901	461.24452836223514	38.328	1.6154	38.328	37.761	39.376	0					74	35	3	0	0	0	0.65582	1	2173	2173		52.299	11.521	2	212700	+		17088	23106	13944	13966	19062	19062		541			0.0076944868491182206
IALIVMDM	8	Oxidation (M)	_IALIVMDM(Oxidation (M))_					0	0	1			REV__ENSG00000203685|ENST00000366788|STUM	REV__ENSG00000203685|ENST00000366788|STUM	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	461.242832	920.471111	-0.47298	-0.00021816	3.9203	0.0018082	3.4473	0.0015901	461.24452836223514	38.328	1.6154	38.328	37.761	39.376	0	0	0	NaN	52.299	74	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212700	+		17089	23106	13944	13966				541			0.0076944868491182206
IALKAQEYN	9	Unmodified	_IALKAQEYN_					0	0	0			REV__tr|A0A7D6VR14|A0A7D6VR14_9CLOTU32familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23535PE=4SV=1	REV__tr|A0A7D6VR14|A0A7D6VR14_9CLOTU32familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23535PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.8050537109375	2	525.284931	1048.55531	0.78202	0.00041079	-3.7302	-0.0019594	-2.9482	-0.0015486	525.2831975453104	91.904	0.31416	90.668	90.589	90.904	-1.2355					8	5	2	0	0	0	0.027343	1	8169	8169		79.451	5.196	1	11862	+		17090	31377	13945	13967	19063	19063					0.032974390976505674
IALKTGTKK	9	Unmodified	_IALKTGTKK_					0	0	0		ENSG00000237452|ENST00000457052|MEIOSIN	ENSG00000237452|ENST00000457052|MEIOSIN	ENSG00000237452|ENST00000457052|MEIOSIN	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.76446533203125	2	480.316035	958.617516	-0.60218	-0.00028924	1.1207	0.0005383	0.51854	0.00024906	480.31603708000745	28.647	0.14959	28.647	28.539	28.688	0					4	2	2	0	0	0	0.027462	1	958	958		40.778	15.204	1	10291			17091	9317	13946	13968	19064	19064					0.13655210236652238
IALLAKAETD	10	Unmodified	_IALLAKAETD_					0	0	0			REV__tr|A0A7D6VY91|A0A7D6VY91_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11775PE=4SV=1	REV__tr|A0A7D6VY91|A0A7D6VY91_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11775PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.2571411132812	2	522.800414	1043.58628	2.0011	0.0010462	-0.29461	-0.00015402	1.7065	0.00089217	522.8001847608004	75.048	0.45049	75.048	74.841	75.292	0					18	10	2	0	0	0	0.026635	1	7458	7458		47.657	1.6851	1	476590	+		17092	31814	13947	13969	19065	19065					0.06622592411895312
IALLAYVSGL	10	Unmodified	_IALLAYVSGL_					0	0	0			REV__tr|A0A7D6VRC4|A0A7D6VRC4_9CLOTBranched-chainaminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06260PE=3SV=1	REV__tr|A0A7D6VRC4|A0A7D6VRC4_9CLOTBranched-chainaminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06260PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	510.30950927734375	2	510.310418	1018.60628	0.72188	0.00036838	-1.0996	-0.00056114	-0.37773	-0.00019276	510.3097721938746	126.6	2.2195	126.37	126.05	128.27	-0.2359					111	44	5	0	0	0	0.47435	1	12421	12421		57.811	4.4598	1	879330	+		17093	31405	13948	13970	19066	19066					0.09772388142516775
IALLKFVTD	9	Unmodified	_IALLKFVTD_					0	0	0			REV__ENSG00000163900|ENST00000421852|TMEM41A	REV__ENSG00000163900|ENST00000421852|TMEM41A	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.3094177246094	2	510.310418	1018.60628	-0.60085	-0.00030662	-0.011383	-5.809E-06	-0.61223	-0.00031243	510.31033129324646	127.85	1.922	126.42	126.09	128.01	-1.4357					108	37	5	0	0	0	0.46377	1	12266	12266		45.952	5.1738	1	1190100	+		17094	20908	13949	13971	19067	19067					0.09772388142516775
IALLLGPPG	9	Unmodified	_IALLLGPPG_					0	0	0			REV__FOXRED2|p.I533Yfs*5|1|0.12|ENSG00000100350|chr22:36495994-36495995|-/A|frameshift_variant	REV__FOXRED2|p.I533Yfs*5|1|0.12|ENSG00000100350|chr22:36495994-36495995|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	425.77459716796875	2	425.773471	849.53239	-0.95445	-0.00040638	4.1695	0.0017752	3.215	0.0013689	425.7751660668595	68.762	2.1455	66.142	65.721	67.866	-2.6203					132	42	5	0	0	0	0.70973	1	5421	5421		14.664	0	1	3515300	+		17095	17406	13950	13972	19068	19068					0.10160464770854105
IALLLLPAR	9	Unmodified	_IALLLLPAR_					0	0	0			REV__CST3|p.F122Pfs*22|1|0.04|ENSG00000101439|chr20:23633994-23633995|-/CCCGCCGGCTGCGGAGGGGA|frameshift_variant	REV__CST3|p.F122Pfs*22|1|0.04|ENSG00000101439|chr20:23633994-23633995|-/CCCGCCGGCTGCGGAGGGGA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	490.336669921875	2	490.33677	978.658987	0.31976	0.00015679	-1.1553	-0.00056648	-0.83553	-0.00040969	490.3362879264998	135.18	3.9777	134.96	134.64	138.62	-0.22697					225	81	5	0	0	0	0.30002	1	13473	13473		62.978	2.6845	1	7114000	+		17096	16246	13951	13973	19069	19069					0.16880390995981998
IALLLLPAR	9	Unmodified	_IALLLLPAR_					0	0	0			REV__CST3|p.F122Pfs*22|1|0.04|ENSG00000101439|chr20:23633994-23633995|-/CCCGCCGGCTGCGGAGGGGA|frameshift_variant	REV__CST3|p.F122Pfs*22|1|0.04|ENSG00000101439|chr20:23633994-23633995|-/CCCGCCGGCTGCGGAGGGGA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	490.3365783691406	2	490.33677	978.658987	-1.5535	-0.00076172	0.74111	0.00036339	-0.81236	-0.00039833	490.33716888209767	136.71	4.5569	135.62	135.22	139.77	-1.0858					270	92	5	0	0	0	0.45513	1	11150	11150		46.766	4.292	1	5555400	+		17097	16246	13951	13973	19070	19070					0.16880390995981998
IALLVHSPDL	10	Unmodified	_IALLVHSPDL_					0	0	0			REV__tr|A0A7D6ZJQ9|A0A7D6ZJQ9_9CLOTCysteinedesulfuraseIscSOS=ClostridiumintestinaleOX=36845GN=nifSPE=3SV=1	REV__tr|A0A7D6ZJQ9|A0A7D6ZJQ9_9CLOTCysteinedesulfuraseIscSOS=ClostridiumintestinaleOX=36845GN=nifSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	539.7915649414062	2	539.318774	1076.623	1.8588	0.0010025	-2.2913	-0.0012357	-0.4325	-0.00023325	539.3172559686625	127.62	1.274	126.52	126	127.27	-1.0933					45	24	3	0	0	0	0.027021	1	10075	10075		37.159	10.363	1	98572	+		17098	32089	13952	13974	19071	19071					0.08774889028472899
IALLWAPRP	9	Unmodified	_IALLWAPRP_					0	0	0		PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant;PRPF8|p.Q2065Hfs*8|1|0.04|ENSG00000174231|chr17:1653809-1653810|-/G|frameshift_variant;ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.Q1835Afs*4|1|0.07|ENSG00000174231|chr17:1658255-1658256|-/C|frameshift_variant;PRPF8|p.F1684Dfs*30|1|0.07|ENSG00000174231|chr17:1659445-1659446|-/AAGTCAGGAGATCGAGACCATC|frameshift_variant	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.333740234375	2	518.818744	1035.62294	-0.64761	-0.00033599	-3.7891	-0.0019659	-4.4367	-0.0023019	518.8169379920641	77.3	0.87289	74.484	74.194	75.067	-2.8165					29	17	3	0	0	0	0.027462	1	6244	6244		20.482	0	1	57766			17099	7449	13953	13975	19072	19072					0.10654933819114376
IALQDRAIL	9	Unmodified	_IALQDRAIL_					0	0	0			REV__ENSG00000153902|ENST00000310123|LGI4	REV__ENSG00000153902|ENST00000310123|LGI4	MULTI-MSMS	OvCa9_classI_Rep2	2	506.81005859375	2	506.811116	1011.60768	1.4081	0.00071364	-2.4174	-0.0012251	-1.0093	-0.00051151	506.809990859047	88.555	2.3705	87.187	86.69	89.061	-1.3676					168	47	5	0	0	0	0.19758	1	7767	7767		76.774	5.4784	1	5233500	+		17100	20352	13954	13976	19073	19073					0.10234022231270501
IALQDRAIL	9	Unmodified	_IALQDRAIL_					0	0	0			REV__ENSG00000153902|ENST00000310123|LGI4	REV__ENSG00000153902|ENST00000310123|LGI4	MULTI-MSMS	OvCa9_classI_Rep3	3	506.8119201660156	2	506.811116	1011.60768	-0.96963	-0.00049142	-0.36531	-0.00018514	-1.3349	-0.00067656	506.8110395873254	89.248	2.4224	87.118	86.702	89.124	-2.1309					173	47	5	0	0	0	0.19758	2	5494	5494;5512		76.774	5.4784	1	9108500	+		17101	20352	13954	13976	19074;19075	19074					0.10234022231270501
IALQLSLVW	9	Unmodified	_IALQLSLVW_					0	0	0		tr|A0A553STN6|A0A553STN6_NIACICytochromeubiquinoloxidasesubunitIOS=NialliacirculansOX=1397GN=CEQ21_05325PE=3SV=1	tr|A0A553STN6|A0A553STN6_NIACICytochromeubiquinoloxidasesubunitIOS=NialliacirculansOX=1397GN=CEQ21_05325PE=3SV=1	tr|A0A553STN6|A0A553STN6_NIACICytochromeubiquinoloxidasesubunitIOS=NialliacirculansOX=1397GN=CEQ21_05325PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.829345703125	2	521.81841	1041.62227	-1.674	-0.00087355	-3.7752	-0.00197	-5.4492	-0.0028435	521.8162646008234	106.97	0.57915	105.09	104.91	105.49	-1.8785					14	10	2	0	0	0	0.027176	1	9746	9746		111.65	6.9017	1	17336			17102	34510	13955	13977	19076	19076					0.1031209437940106
IALRFVLN	8	Unmodified	_IALRFVLN_					0	0	0			REV__tr|A0A553SQI0|A0A553SQI0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07670PE=4SV=1	REV__tr|A0A553SQI0|A0A553SQI0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07670PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	473.2850646972656	2	473.297645	944.580737	-0.17911	-8.4772E-05	-2.9272	-0.0013854	-3.1063	-0.0014702	473.29628478586767	87.428	0.20615	85.252	85.087	85.293	-2.1768					5	3	2	0	0	0	0.028476	1	5256	5256		42.474	5.3154	1	7602.8	+		17103	30631	13956	13978	19077	19077					0.10622958410749561
IALRIQPND	9	Unmodified	_IALRIQPND_					0	0	0		nc|ENSG00000119865|Q96F85-2|CNRIP1;ENSG00000119865|ENST00000263655|CNRIP1	nc|ENSG00000119865|Q96F85-2|CNRIP1	nc|ENSG00000119865|Q96F85-2|CNRIP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.7785034179688	2	520.298373	1038.58219	0.75291	0.00039174	2.3166	0.0012053	3.0695	0.001597	520.2996487265359	111.95	0.73953	111.81	111.57	112.31	-0.13961					22	14	2	0	0	0	0.027462	1	10638	10638		16.473	4.2663	1	22187			17104	3399	13957	13979	19078	19078					0.06444547708861137
IALVHLVM	8	Unmodified	_IALVHLVM_					0	0	0			REV__ENST00000265362.8_1_7:83606489-83610685:-|nuORF	REV__ENST00000265362.8_1_7:83606489-83610685:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	448.2771301269531	2	448.275324	894.536095	1.0889	0.00048813	3.4795	0.0015598	4.5684	0.0020479	448.2767184820242	67.307	1.1511	64.42	64.187	65.338	-2.8873					44	22	3	0	0	0	0.69862	1	2835	2835		43.626	19.122	1	85921	+		17105	24030	13958	13980	19079	19079					0.08460811273062063
IALVHVEIF	9	Unmodified	_IALVHVEIF_					0	0	0		ENSG00000174937|ENST00000641993|OR5M3	ENSG00000174937|ENST00000641993|OR5M3	ENSG00000174937|ENST00000641993|OR5M3	MULTI-MSMS	OvCa99_classI_Rep5	1	520.8125	2	520.810585	1039.60662	1.9544	0.0010179	0.39244	0.00020439	2.3469	0.0012223	520.810670448214	121.18	0.50958	121.18	120.97	121.47	0					18	11	2	0	0	0	0.1595	1	13941	13941		83.287	11.909	1	240430			17106	7500	13959	13981	19080	19080					0.08839807862364069
IALVHVEIF	9	Unmodified	_IALVHVEIF_					0	0	0		ENSG00000174937|ENST00000641993|OR5M3	ENSG00000174937|ENST00000641993|OR5M3	ENSG00000174937|ENST00000641993|OR5M3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	520.810585	1039.60662	-0.52757	-0.00027476	0.21265	0.00011075	-0.31492	-0.00016401	520.8106850305178	121.21	0.83992	121.01	120.7	121.54	-0.19719	-0.15811	0.00077734	NaN	83.287	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35154			17107	7500	13959	13981							0.08839807862364069
IALVHVEIF	9	Unmodified	_IALVHVEIF_					0	0	0		ENSG00000174937|ENST00000641993|OR5M3	ENSG00000174937|ENST00000641993|OR5M3	ENSG00000174937|ENST00000641993|OR5M3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	520.810585	1039.60662	1.4372	0.00074852	-1.7497	-0.00091125	-0.31246	-0.00016273	520.8096047175952	122.24	0.83941	121.21	121.01	121.85	-1.0286	0.040445	-0.0012667	NaN	83.287	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57936			17108	7500	13959	13981							0.08839807862364069
IALVHVEIF	9	Unmodified	_IALVHVEIF_					0	0	0		ENSG00000174937|ENST00000641993|OR5M3	ENSG00000174937|ENST00000641993|OR5M3	ENSG00000174937|ENST00000641993|OR5M3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	520.810585	1039.60662	-0.013433	-6.996E-06	-0.3832	-0.00019958	-0.39663	-0.00020657	520.8102602791851	122.65	1.0408	121.28	120.91	121.95	-1.3666	0.10894	0.00015669	NaN	83.287	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55544			17109	7500	13959	13981							0.08839807862364069
IALVLTLQP	9	Unmodified	_IALVLTLQP_					0	0	0			REV__ENSG00000158156|ENST00000373884|XKR8	REV__ENSG00000158156|ENST00000373884|XKR8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.7998046875	2	484.312961	966.611368	-0.16702	-8.089E-05	-0.23237	-0.00011254	-0.39939	-0.00019343	484.3129577423932	98.733	0.71738	96.354	95.921	96.638	-2.3786					19	13	2	0	0	0	0.027418	1	8746	8746		49.442	10.635	1	21063	+		17110	20553	13960	13982	19081	19081					0.12672692005139652
IALVLTLQP	9	Unmodified	_IALVLTLQP_					0	0	0			REV__ENSG00000158156|ENST00000373884|XKR8	REV__ENSG00000158156|ENST00000373884|XKR8	MULTI-MATCH	OvCa9_classI_Rep2	2		2	484.312961	966.611368	-0.050274	-2.4348E-05	-0.73889	-0.00035785	-0.78917	-0.0003822	484.3122604999496	97.387	0.74102	96.429	96.217	96.958	-0.95857	0.037261	-0.00024122	NaN	49.442	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16127	+		17111	20553	13960	13982							0.12672692005139652
IAMGKNVK	8	Unmodified	_IAMGKNVK_					0	0	0			REV__tr|A0A553SM34|A0A553SM34_NIACIHADfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_21825PE=4SV=1	REV__tr|A0A553SM34|A0A553SM34_NIACIHADfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_21825PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	429.76263427734375	2	430.754756	859.494958	-0.029356	-1.2645E-05	-3.5474	-0.0015281	-3.5768	-0.0015407	430.7530741450341	70.517	0.39465	70.517	70.328	70.722	0					13	9	2	0	0	0	0.028476	1	6756	6756		44.531	20.328	1	225270	+		17112	30290	13961	13983	19082	19082					0.05959050233582275
IAMHLAIPE	9	Unmodified	_IAMHLAIPE_					0	0	0		tr|A0A7D6VP00|A0A7D6VP00_9CLOTRibonucleoside-diphosphatereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21075PE=3SV=1	tr|A0A7D6VP00|A0A7D6VP00_9CLOTRibonucleoside-diphosphatereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21075PE=3SV=1	tr|A0A7D6VP00|A0A7D6VP00_9CLOTRibonucleoside-diphosphatereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21075PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.78857421875	2	497.773145	993.531738	0.077799	3.8726E-05	0.74551	0.00037109	0.82331	0.00040982	497.77313978287907	112.22	0.6226	110.71	110.47	111.1	-1.5111					14	11	2	0	0	0	0.027299	1	10389	10389		62.978	13.768	1	12118			17113	34741	13962	13984	19083	19083					0.034713020594722366
IAMKAKKKM	9	Unmodified	_IAMKAKKKM_					0	0	0			REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-SECPEP	OvCa9_classI_Rep3	3	524.8052978515625	2	524.822115	1047.62968	-1.7335	-0.00090976	-2.6908	-0.0014122	-4.4243	-0.002322	524.8201779059497	92.615	0.51238	90.653	90.468	90.981	-1.9617					14	10	2	0	0	0	0.027392	1	5878	5878		63.306	24.285	1	81969	+		17114	22973	13963	13985	19084	19084					0.10776787383838382
IAMKFGARVT	10	Unmodified	_IAMKFGARVT_					0	0	0		tr|A0A7D6ZH49|A0A7D6ZH49_9CLOTDHA2familyeffluxMFStransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_01470PE=3SV=1	tr|A0A7D6ZH49|A0A7D6ZH49_9CLOTDHA2familyeffluxMFStransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_01470PE=3SV=1	tr|A0A7D6ZH49|A0A7D6ZH49_9CLOTDHA2familyeffluxMFStransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_01470PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	547.3145751953125	2	547.312969	1092.61138	0.92598	0.0005068	1.5423	0.00084412	2.4683	0.0013509	547.313722903106	154.49	1.7677	154.49	154.17	155.94	0					62	34	2	0	0	0	0.59317	1	18124	18124		42.864	6.4175	1	250480			17115	35565	13964	13986	19085	19085					0.06878368733509888
IAMRFTLK	8	Unmodified	_IAMRFTLK_					0	0	0			REV__nc|ENSG00000003137|Q9NR63-2|CYP26B1	REV__nc|ENSG00000003137|Q9NR63-2|CYP26B1	MULTI-SECPEP	OvCa9_classI_Rep3	3	490.277099609375	2	490.291505	978.568457	-1.4413	-0.00070668	-3.0486	-0.0014947	-4.4899	-0.0022014	490.29010051904174	85.971	0.34996	83.751	83.586	83.936	-2.2204					10	6	2	0	0	0	0.028476	1	5099	5099		50.025	5.9077	1	28764	+		17116	16369	13965	13987	19086	19086					0.0783159867607992
IAMSRIGGNI	10	Unmodified	_IAMSRIGGNI_					0	0	0			REV__ENSG00000117501|ENST00000367759|MROH9	REV__ENSG00000117501|ENST00000367759|MROH9	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2794189453125	2	516.286951	1030.55935	1.4193	0.00073276	0.56765	0.00029307	1.9869	0.0010258	516.2876241970132	87.5	0.57457	87.5	87.096	87.671	0					15	13	2	0	0	0	0.02663	1	9227	9227		35.152	0	1	188200	+		17117	18354	13966	13988	19087	19087					0.04529205319749963
IAMSTIFLS	9	Unmodified	_IAMSTIFLS_					0	0	0			REV__tr|A0A553SLM6|A0A553SLM6_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_20910PE=3SV=1	REV__tr|A0A553SLM6|A0A553SLM6_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_20910PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	491.7704162597656	2	491.767529	981.520504	0.091173	4.4836E-05	3.2664	0.0016063	3.3576	0.0016511	491.768930924626	47.008	1.3198	43.935	43.604	44.923	-3.0724					58	25	4	0	0	0	0.13154	1	2495	2495		88.643	20.158	1	448150	+		17118	30240	13967	13989	19088	19088					0.02900479965364866
IAMSTIFLS	9	Unmodified	_IAMSTIFLS_					0	0	0			REV__tr|A0A553SLM6|A0A553SLM6_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_20910PE=3SV=1	REV__tr|A0A553SLM6|A0A553SLM6_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_20910PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	491.767529	981.520504	0.17218	8.4671E-05	3.4176	0.0016807	3.5898	0.0017653	491.76896690561193	46.598	1.0904	43.889	43.596	44.687	-2.7097	-0.023414	8.656E-05	NaN	88.643	43	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128060	+		17119	30240	13967	13989							0.02900479965364866
IAMSTIFLS	9	Unmodified	_IAMSTIFLS_					0	0	0			REV__tr|A0A553SLM6|A0A553SLM6_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_20910PE=3SV=1	REV__tr|A0A553SLM6|A0A553SLM6_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_20910PE=3SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	491.767529	981.520504	0.091173	4.4836E-05	3.2664	0.0016063	3.3576	0.0016511	491.768930924626	47.008	1.3198	43.935	43.604	44.923	-3.0724	0.023414	-6.2176E-05	NaN	88.643	58	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	448150	+		17120	30240	13967	13989							0.02900479965364866
IANFNRDVK	9	Unmodified	_IANFNRDVK_					0	0	0		tr|A0A553SGJ7|A0A553SGJ7_NIACIResponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_10970PE=4SV=1	tr|A0A553SGJ7|A0A553SGJ7_NIACIResponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_10970PE=4SV=1	tr|A0A553SGJ7|A0A553SGJ7_NIACIResponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_10970PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	538.3155517578125	2	538.795998	1075.57744	-0.28207	-0.00015198	0.39921	0.00021509	0.11715	6.3118E-05	538.796029706124	70.954	1.0864	68.384	67.866	68.952	-2.5707					32	20	2	0	0	0	0.027462	1	5746	5746		44.117	13.613	1	42590			17121	33165	13968	13990	19089	19089					0.04267663566088231
IANKLPQLI	9	Unmodified	_IANKLPQLI_					0	0	0		nc|ENSG00000188676|Q6ZQW0-2|IDO2;ENSG00000188676|ENST00000502986|IDO2	nc|ENSG00000188676|Q6ZQW0-2|IDO2	nc|ENSG00000188676|Q6ZQW0-2|IDO2	MULTI-MSMS	OvCa9_classI_Rep2	2	505.3233947753906	2	505.32386	1008.63317	-0.88225	-0.00044582	0.098992	5.0023E-05	-0.78326	-0.0003958	505.32395200705264	104.82	2.7808	104.24	103.97	106.75	-0.57639					155	55	5	0	0	0	0.055688	2	9742	9730;9742		115.46	3.6419	1	5956700			17122	8491	13969	13991	19090;19091	19091					0.12919496753715976
IANKLPQLI	9	Unmodified	_IANKLPQLI_					0	0	0		nc|ENSG00000188676|Q6ZQW0-2|IDO2;ENSG00000188676|ENST00000502986|IDO2	nc|ENSG00000188676|Q6ZQW0-2|IDO2	nc|ENSG00000188676|Q6ZQW0-2|IDO2	MULTI-MSMS	OvCa9_classI_Rep3	3	505.32501220703125	2	505.32386	1008.63317	-0.070853	-3.5804E-05	-0.98951	-0.00050002	-1.0604	-0.00053583	505.3234123415825	105.62	3.1767	104.28	103.99	107.17	-1.3482					167	61	5	0	0	0	0.023378	5	7414	7403;7414;7433;7451;7475		143.02	25.55	1	6543100			17123	8491	13969	13991	19092;19093;19094;19095;19096	19093					0.12919496753715976
IANKLPQLI	9	Unmodified	_IANKLPQLI_					0	0	0		nc|ENSG00000188676|Q6ZQW0-2|IDO2;ENSG00000188676|ENST00000502986|IDO2	nc|ENSG00000188676|Q6ZQW0-2|IDO2	nc|ENSG00000188676|Q6ZQW0-2|IDO2	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.3253173828125	2	505.32386	1008.63317	-1.1336	-0.00057284	0.36205	0.00018295	-0.77156	-0.00038989	505.3241044168956	106.3	1.7009	104.28	103.95	105.65	-2.0161					120	32	5	0	0	0	0.071436	1	9705	9705		106.42	0	1	7078200			17124	8491	13969	13991	19097	19097					0.12919496753715976
IANLQRAAL	9	Unmodified	_IANLQRAAL_					0	0	0		chr16:681350-681560|158|56.08|0.06|9.87|+|2|STUB1,None|1	chr16:681350-681560|158|56.08|0.06|9.87|+|2|STUB1,None|1	chr16:681350-681560|158|56.08|0.06|9.87|+|2|STUB1,None|1	MULTI-MSMS	OvCa99_classI_Rep5	1	485.2961120605469	2	485.295633	968.576714	1.5246	0.0007399	0.25288	0.00012272	1.7775	0.00086262	485.29559232930694	83.678	0.62991	83.678	83.463	84.093	0					24	14	2	0	0	0	0.085069	1	8720	8720		101.21	13.457	1	824070			17125	381	13970	13992	19098	19098					0.09116868917021748
IANPGIILDP	10	Unmodified	_IANPGIILDP_					0	0	0			REV__tr|A0A553SNB8|A0A553SNB8_NIACIExtracellularsolute-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_24060PE=4SV=1	REV__tr|A0A553SNB8|A0A553SNB8_NIACIExtracellularsolute-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_24060PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	511.7996520996094	2	511.797675	1021.5808	1.8777	0.00096099	1.5132	0.00077447	3.3909	0.0017355	511.79824065646653	79.552	1.8763	79.552	79.16	81.037	0					141	45	4	0	0	0	0.59703	1	8189	8189		42.396	5.237	1	3983800	+		17126	30406	13971	13993	19099	19099					0.07086913620082669
IANRAIEIL	9	Unmodified	_IANRAIEIL_					0	0	0		tr|A0A7D6ZIV5|A0A7D6ZIV5_9CLOTAspartateammonia-lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08580PE=4SV=1	tr|A0A7D6ZIV5|A0A7D6ZIV5_9CLOTAspartateammonia-lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08580PE=4SV=1	tr|A0A7D6ZIV5|A0A7D6ZIV5_9CLOTAspartateammonia-lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08580PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.8106994628906	2	506.811116	1011.60768	-0.91945	-0.00046599	-1.1845	-0.0006003	-2.1039	-0.0010663	506.81048510289196	101.22	3.3613	98.954	98.29	101.65	-2.2665					172	65	4	0	0	0	0.21231	1	9128	9128		74.255	0.28031	1	2669900			17127	35626	13972	13994	19100	19100					0.10234022231270501
IANTVELRV	9	Unmodified	_IANTVELRV_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.80194091796875	2	507.800749	1013.58694	1.0497	0.00053306	-1.4109	-0.00071648	-0.36121	-0.00018342	507.8000696129352	85.74	1.2343	83.093	82.8	84.035	-2.6463					56	24	3	0	0	0	0.084918	1	7233	7233		101.25	18.502	1	361680			17128	3322	13973	13995	19101	19101					0.08069431851606623
IAPDVNDLVV	10	Unmodified	_IAPDVNDLVV_					0	0	0			REV__nc|ENSG00000239474|O60662-2|KLHL41	REV__nc|ENSG00000239474|O60662-2|KLHL41	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2749633789062	2	527.792589	1053.57063	-1.026	-0.0005415	-1.5834	-0.0008357	-2.6094	-0.0013772	527.7915991669015	34.186	0.52709	34.186	33.824	34.351	0					19	10	3	0	0	0	0.02706	1	1643	1643		37.812	16.109	1	114740	+		17129	23431	13974	13996	19102	19102					0.04598305894865007
IAPFFVLC	8	Carbamidomethyl (C)	_IAPFFVLC(Carbamidomethyl (C))_	IAPFFVLC(1)		IAPFFVLC(55)		0	1	0			REV__tr|A0A553STB0|A0A553STB0_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_04630PE=3SV=1	REV__tr|A0A553STB0|A0A553STB0_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_04630PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	483.7589416503906	2	483.759507	965.50446	1.787	0.00086446	-2.8433	-0.0013755	-1.0564	-0.00051102	483.75798479305814	134.7	2.7244	134.7	134.34	137.06	0					135	58	4	0	0	0	0.64315	2	15731	15731;15794		54.895	10.364	1	4346500	+		17130	30940	13975	13997	19103;19104	19103	367				0.020328185191146986
IAPGLLMGMI	10	Unmodified	_IAPGLLMGMI_					0	0	0		tr|A0A7D6VNT5|A0A7D6VNT5_9CLOTPTSfructosetransportersubunitIICOS=ClostridiumintestinaleOX=36845GN=HZF06_13940PE=4SV=1	tr|A0A7D6VNT5|A0A7D6VNT5_9CLOTPTSfructosetransportersubunitIICOS=ClostridiumintestinaleOX=36845GN=HZF06_13940PE=4SV=1	tr|A0A7D6VNT5|A0A7D6VNT5_9CLOTPTSfructosetransportersubunitIICOS=ClostridiumintestinaleOX=36845GN=HZF06_13940PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.2893371582031	2	508.287574	1014.56059	2.1371	0.0010863	0.080635	4.0986E-05	2.2178	0.0011273	508.28754528324424	85.025	1.2813	85.025	84.631	85.912	0					82	30	4	0	0	0	0.5794	1	8892	8892		44.531	0.41427	1	12167000			17131	34725	13976	13998	19105	19105					0.053897033642783754
IAPHRSLKV	9	Unmodified	_IAPHRSLKV_					0	0	0		ENSG00000165953|ENST00000677451|SERPINA12	ENSG00000165953|ENST00000677451|SERPINA12	ENSG00000165953|ENST00000677451|SERPINA12	MULTI-SECPEP	OvCa9_classI_Rep2	2	511.2749938964844	2	510.819276	1019.624	-0.1649	-8.4235E-05	-0.039998	-2.0432E-05	-0.2049	-0.00010467	510.818979877549	45.431	0.90164	42.721	42.448	43.349	-2.7097					23	17	2	0	0	0	0.027462	1	2629	2629		20.947	1.587	1	54003			17132	6620	13977	13999	19106	19106					0.11497148188038864
IAPKIVNEPLG	11	Unmodified	_IAPKIVNEPLG_					0	0	0			REV__tr|A0A7D6VTH8|A0A7D6VTH8_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02410PE=4SV=1	REV__tr|A0A7D6VTH8|A0A7D6VTH8_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02410PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8434448242188	2	575.845156	1149.67576	-2.8608	-0.0016474	-0.58729	-0.00033819	-3.4481	-0.0019856	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.69455	1	14558	14558		31.53	1.0262	1	356230	+		17133	31606	13978	14000	19107	19107					0.10690847091268552
IAPKPVILQAS	11	Unmodified	_IAPKPVILQAS_					0	0	0			REV__DCC|p.Q1369Rfs*8|1|0.05|ENSG00000187323|chr18:53499504-53499505|-/G|frameshift_variant	REV__DCC|p.Q1369Rfs*8|1|0.05|ENSG00000187323|chr18:53499504-53499505|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	568.853515625	2	568.855524	1135.69649	-5.375	-0.0030576	2.0179	0.0011479	-3.3571	-0.0019097	568.8565433281535	160.72	1.3933	160.5	160.18	161.57	-0.22696					89	27	5	0	0	0	0.70761	1	16436	16436		27.047	7.6873	1	747650	+		17134	16272	13979	14001	19108	19108					0.1340743747095985
IAPRRESRS	9	Unmodified	_IAPRRESRS_					0	0	0			REV__ENST00000240719.7_1_19:58038771-58038957:+|nuORF	REV__ENST00000240719.7_1_19:58038771-58038957:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.2950439453125	2	536.304521	1070.59449	0.36871	0.00019774	0.56881	0.00030506	0.93752	0.0005028	536.3057901937518	91.376	1.1932	90.14	89.291	90.484	-1.2355					31	22	2	0	0	0	0.027462	1	8022	8022		30.504	14.862	1	30847	+		17135	23822	13980	14002	19109	19109					0.06201584171913055
IAPSCRGLA	9	Carbamidomethyl (C)	_IAPSC(Carbamidomethyl (C))RGLA_	IAPSC(1)RGLA		IAPSC(66)RGLA		0	1	0			REV__ENST00000381340.7_1_12:26985723-26986077:-|nuORF	REV__ENST00000381340.7_1_12:26985723-26986077:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	472.75146484375	2	472.752744	943.490935	-0.97149	-0.00045927	1.4188	0.00067072	0.44726	0.00021145	472.7533157758618	63.829	1.474	61.084	60.739	62.213	-2.7444					72	27	3	0	0	0	0.27546	1	4853	4853		65.803	10.299	1	801380	+		17136	25195	13981	14003	19110	19110	310				0.016929607398765256
IAPSISTMLI	10	Unmodified	_IAPSISTMLI_					0	0	0			REV__tr|A0A7D7AE81|A0A7D7AE81_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01485PE=4SV=1	REV__tr|A0A7D7AE81|A0A7D7AE81_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01485PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3037109375	2	523.301736	1044.58892	-0.69596	-0.0003642	4.2173	0.0022069	3.5214	0.0018427	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.71192	1	13953	13953		29.15	2.3535	1	130240	+		17137	32702	13982	14004	19111	19111					0.06840724545213561
IAPTKPQKLP	10	Unmodified	_IAPTKPQKLP_					0	0	0		ENST00000522092.5_2_8:772178-1087480:+|nuORF	ENST00000522092.5_2_8:772178-1087480:+|nuORF	ENST00000522092.5_2_8:772178-1087480:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.8401489257812	2	546.842416	1091.67028	-6.4593	-0.0035322	2.5386	0.0013882	-3.9208	-0.0021441	546.8437237604664	159.32	1.8651	157.73	157.41	159.27	-1.5858					118	42	5	0	0	0	0.62299	1	15715	15715		39.253	5.0803	1	864300			17138	13134	13983	14005	19112	19112					0.12811168299458586
IAPVTLKVF	9	Unmodified	_IAPVTLKVF_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	OvCa99_classI_Rep5	1	494.314697265625	2	494.315503	986.616454	1.5164	0.00074957	-3.4294	-0.0016952	-1.913	-0.00094564	494.31355829170485	106.93	0.69596	106.93	106.49	107.19	0					36	15	3	0	0	0	0.71696	1	12054	12054		12.207	0.69583	1	732870			17139	5651	13984	14006	19113	19113					0.12260995867757174
IAPVWQEVE	9	Unmodified	_IAPVWQEVE_					0	0	0		ENST00000579491.1_1_17:70819903-70845742:-|nuORF;ENST00000584129.1_1_17:70819903-70845848:-|nuORF	ENST00000579491.1_1_17:70819903-70845742:-|nuORF	ENST00000579491.1_1_17:70819903-70845742:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.2594604492188	2	535.779482	1069.54441	-0.10715	-5.7409E-05	-3.0551	-0.0016369	-3.1623	-0.0016943	536.2787004540501	86.031	0.80077	83.811	83.536	84.337	-2.2204					21	15	2	0	0	0	0.027462	1	5142	5142		29.15	0	1	24998			17140	13981	13985	14007	19114	19114					0.0124203672337444
IAQDHRSSL	9	Unmodified	_IAQDHRSSL_					0	0	0		ENST00000523711.5_1_8:1824717-1874701:+|nuORF;nc|ENSG00000104728|O15013-7|ARHGEF10;nc|ENSG00000104728|O15013-4|ARHGEF10;ENSG00000104728|ENST00000349830|ARHGEF10;nc|ENSG00000104728|O15013-6|ARHGEF10;nc|ENSG00000104728|O15013|ARHGEF10	ENST00000523711.5_1_8:1824717-1874701:+|nuORF	ENST00000523711.5_1_8:1824717-1874701:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	513.769775390625	2	513.76998	1025.52541	-0.31973	-0.00016427	-0.12623	-6.4855E-05	-0.44596	-0.00022912	513.7698302790957	33.31	0.68822	33.31	33.136	33.824	0					38	13	5	0	0	0	0.084918	1	1517	1517		101.25	19.012	1	1094300			17141	2388	13986	14008	19115	19115					0.013665001523349929
IAQEHSTLSQ	10	Unmodified	_IAQEHSTLSQ_					0	0	0		nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.E3356Afs*12|1|0.31|ENSG00000151914|chr6:56535225-56535226|-/CCAG|frameshift_variant	nc|ENSG00000151914|Q03001|DST	nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.3281860351562	2	557.280377	1112.5462	-0.10083	-5.619E-05	1.1548	0.00064353	1.0539	0.00058734	557.280996580564	29.479	0.39841	29.479	29.337	29.735	0					13	7	3	0	0	0	0.027088	1	1061	1061		14.137	0	1	113640			17142	5594	13987	14009	19116	19116					-0.005569542586499665
IAQLRSLTP	9	Unmodified	_IAQLRSLTP_					0	0	0			REV__ENSG00000149311|ENST00000675843|ATM	REV__ENSG00000149311|ENST00000675843|ATM	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.2962646484375	2	499.803291	997.59203	-0.71608	-0.0003579	0.48775	0.00024378	-0.22833	-0.00011412	499.80349505050685	88.319	0.84738	86.188	85.854	86.702	-2.1309					26	16	2	0	0	0	0.027462	1	5329	5329		47.657	30.189	1	166160	+		17143	20157	13988	14010	19117	19117					0.09313735714226823
IAQMSGSTVI	10	Unmodified	_IAQMSGSTVI_					0	0	0			REV__tr|A0A553SN18|A0A553SN18_NIACIPLP-dependentaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_23440PE=4SV=1	REV__tr|A0A553SN18|A0A553SN18_NIACIPLP-dependentaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_23440PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.76495361328125	2	503.765517	1005.51648	-1.6588	-0.00083564	1.7236	0.00086827	0.064774	3.2631E-05	503.7662138047435	50.69	1.5798	47.516	46.942	48.522	-3.1734					48	27	3	0	0	0	0.44431	1	2915	2915		62.107	10.915	1	410160	+		17144	30387	13989	14011	19118	19118					0.013943904716484212
IAQRLKGLG	9	Unmodified	_IAQRLKGLG_					0	0	0		ENST00000591753.1_2_17:40715869-40717983:+|nuORF;ENSG00000068120|ENST00000393818|COASY;nc|ENSG00000068120|Q13057-2|COASY	ENST00000591753.1_2_17:40715869-40717983:+|nuORF	ENST00000591753.1_2_17:40715869-40717983:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.2635192871094	2	478.306001	954.597449	0.17254	8.2527E-05	-0.43419	-0.00020768	-0.26165	-0.00012515	478.30571827698395	32.198	0.54678	32.198	32.006	32.553	0					27	10	4	0	0	0	0.027462	1	1385	1385		33.516	16.151	1	141720			17145	1387	13990	14012	19119	19119					0.11833459296713045
IAQWKQTN	8	Unmodified	_IAQWKQTN_					0	0	0		ENSG00000134684|ENST00000373477|YARS1;PUM1-YARS|1|fusion;PUM1-YARS|2|fusion;ENST00000490826.1_1_1:33241584-33245138:-|nuORF;ENST00000469100.5_1_1:33241584-33246798:-|nuORF;ENST00000487404.5_1_1:33241584-33248146:-|nuORF	ENSG00000134684|ENST00000373477|YARS1	ENSG00000134684|ENST00000373477|YARS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.76690673828125	2	494.764166	987.513779	0.5334	0.00026391	2.2931	0.0011346	2.8265	0.0013985	494.7652083816197	68.443	0.83561	64.953	64.671	65.507	-3.4902					55	16	4	0	0	0	0.38598	1	5083	5083		90.777	0.1758	1	1917800			17146	4316	13991	14013	19120	19120					0.01952303128996391
IAQWLEVVP	9	Unmodified	_IAQWLEVVP_					0	0	0		ENSG00000166535|ENST00000299698|A2ML1	ENSG00000166535|ENST00000299698|A2ML1	ENSG00000166535|ENST00000299698|A2ML1	MULTI-MSMS	OvCa99_classI_Rep5	1	527.8012084960938	2	527.800217	1053.58588	1.483	0.00078275	0.77026	0.00040655	2.2533	0.0011893	527.8004333249929	138.14	1.4486	138.14	137.82	139.27	0					79	30	4	0	0	0	0.19758	1	16143	16143		76.774	2.7994	1	986900			17147	6691	13992	14014	19121	19121					0.06123217482718246
IARAESFEP	9	Unmodified	_IARAESFEP_					0	0	0			REV__ENST00000461319.5_1_2:27425724-27426164:-|nuORF	REV__ENST00000461319.5_1_2:27425724-27426164:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.3092956542969	2	510.261456	1018.50836	-1.2493	-0.00063749	-1.3801	-0.00070421	-2.6294	-0.0013417	510.2637389841029	127.41	1.117	125.98	125.59	126.71	-1.4357					37	21	3	0	0	0	0.027426	1	12227	12227		66.429	8.618	1	49240	+		17148	26095	13993	14015	19122	19122					-0.00015420453473780071
IARARSHG	8	Unmodified	_IARARSHG_					0	0	0			REV__ENST00000565075.5_1_15:66169820-66170138:+|nuORF	REV__ENST00000565075.5_1_15:66169820-66170138:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.2889404296875	2	434.249018	866.483482	1.9616	0.00085182	-2.4035	-0.0010437	-0.44192	-0.0001919	434.24716964576163	85.64	0.5386	82.994	82.755	83.293	-2.6463					13	10	2	0	0	0	0.028476	1	7194	7194		45.952	21.749	1	9800	+		17149	27674	13994	14016	19123	19123					0.04489989254466309
IARAVCTSSP	10	Unmodified	_IARAVCTSSP_					0	0	0			REV__nc|ENSG00000123485|Q8NCD3-3|HJURP	REV__nc|ENSG00000123485|Q8NCD3-3|HJURP	MULTI-MSMS	OvCa9_classI_Rep3	3	502.76324462890625	2	502.763309	1003.51206	1.2962	0.00065166	-1.3666	-0.00068706	-0.070404	-3.5396E-05	502.76247959947113	61.457	2.958	58.389	57.803	60.761	-3.0685					131	69	3	0	0	0	0.35465	1	2140	2140		74.255	13.283	1	112640	+		17150	18644	13995	14017	19124	19124					0.010449260487234824
IARCIDIQ	8	Carbamidomethyl (C)	_IARC(Carbamidomethyl (C))IDIQ_	IARC(1)IDIQ		IARC(71)IDIQ		0	1	0		RICTOR|p.L1512Tfs*4|1|0.3|ENSG00000164327|chr5:38945587-38945594|GTAGTCCA/-|frameshift_variant;ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR;ENST00000510711.5_1_5:38971963-39074479:-|nuORF;nc|ENSG00000164327|Q6R327-4|RICTOR;ENST00000513566.1_1_5:38981926-39074494:-|nuORF	RICTOR|p.L1512Tfs*4|1|0.3|ENSG00000164327|chr5:38945587-38945594|GTAGTCCA/-|frameshift_variant	RICTOR|p.L1512Tfs*4|1|0.3|ENSG00000164327|chr5:38945587-38945594|GTAGTCCA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.7669982910156	2	494.765852	987.51715	0.5334	0.00026391	-1.1134	-0.00055085	-0.57995	-0.00028694	494.7652083816197	68.443	0.83561	64.953	64.671	65.507	-3.4902					55	16	4	0	0	0	0.56195	1	5096	5096		71.296	7.0884	1	1917800			17151	6447	13996	14018	19125	19125	62				0.022892299113664194
IARDQLAIL	9	Unmodified	_IARDQLAIL_					0	0	0		ENST00000587780.5_1_19:35616099-35616483:-|nuORF;ENST00000392225.7_1_19:35616099-35617731:-|nuORF;ENSG00000153902|ENST00000310123|LGI4	ENST00000587780.5_1_19:35616099-35616483:-|nuORF	ENST00000587780.5_1_19:35616099-35616483:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	506.8106689453125	2	506.811116	1011.60768	1.4081	0.00071364	-2.4174	-0.0012251	-1.0093	-0.00051151	506.809990859047	88.555	2.3705	87.187	86.69	89.061	-1.3676					168	47	5	0	0	0	0.24951	1	7755	7755		68.787	5.4806	1	5233500			17152	5699	13997	14019	19126	19126					0.10234022231270501
IARDQLAIL	9	Unmodified	_IARDQLAIL_					0	0	0		ENST00000587780.5_1_19:35616099-35616483:-|nuORF;ENST00000392225.7_1_19:35616099-35617731:-|nuORF;ENSG00000153902|ENST00000310123|LGI4	ENST00000587780.5_1_19:35616099-35616483:-|nuORF	ENST00000587780.5_1_19:35616099-35616483:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	506.8111572265625	2	506.811116	1011.60768	-0.96963	-0.00049142	-0.36531	-0.00018514	-1.3349	-0.00067656	506.8110395873254	89.248	2.4224	87.118	86.702	89.124	-2.1309					173	47	5	0	0	0	0.24951	1	5500	5500		68.787	5.4806	1	9108500			17153	5699	13997	14019	19127	19127					0.10234022231270501
IARGARPW	8	Unmodified	_IARGARPW_					0	0	0			REV__ENST00000462934.5_1_7:6449470-6461666:-|nuORF	REV__ENST00000462934.5_1_7:6449470-6461666:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.769775390625	2	463.769586	925.524619	0.6937	0.00032172	-1.6958	-0.00078646	-1.0021	-0.00046474	463.76843369384017	84.654	0.96269	81.992	81.73	82.693	-2.6629					53	19	5	0	0	0	0.64377	1	7096	7096		54.765	1.4132	1	302930	+		17154	26120	13998	14020	19128	19128					0.05887750293936733
IARIPVAR	8	Unmodified	_IARIPVAR_					0	0	0		CBX8|p.T367Ifs*21|1|0.2|ENSG00000141570|chr17:79794705-79794706|-/GGCGCGCATTCTGCGTCCTCGGAGCGCAGAGCGA|frameshift_variant;ENSG00000141570|ENST00000269385|CBX8	CBX8|p.T367Ifs*21|1|0.2|ENSG00000141570|chr17:79794705-79794706|-/GGCGCGCATTCTGCGTCCTCGGAGCGCAGAGCGA|frameshift_variant	CBX8|p.T367Ifs*21|1|0.2|ENSG00000141570|chr17:79794705-79794706|-/GGCGCGCATTCTGCGTCCTCGGAGCGCAGAGCGA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	448.2496337890625	2	448.295436	894.57632	0.9674	0.00043368	-0.97667	-0.00043784	-0.0092763	-4.1585E-06	448.2947771737157	63.199	0.63083	63.199	62.976	63.607	0					28	15	3	0	0	0	0.028476	1	5684	5684		25.45	6.0902	1	1475100			17155	191	13999	14021	19129	19129					0.12481493987831982
IARKARRH	8	Unmodified	_IARKARRH_					0	0	0		ENST00000438282.6_1_3:2613181-3030164:+|nuORF;CNTN4|p.S616Yfs*7|1|0.05|ENSG00000144619|chr3:3034694-3034695|-/A|frameshift_variant;ENST00000430505.6_1_3:2613181-3079017:+|nuORF;ENSG00000144619|ENST00000418658|CNTN4	ENST00000438282.6_1_3:2613181-3030164:+|nuORF	ENST00000438282.6_1_3:2613181-3030164:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.3196716308594	2	504.320309	1006.62606	-0.94063	-0.00047438	-0.66968	-0.00033773	-1.6103	-0.00081211	504.3198291935092	144.23	1.5675	142.79	142.43	143.99	-1.4357					72	29	4	0	0	0	0.74971	1	14139	14139		26.796	1.3459	1	140800			17156	591	14000	14022	19130	19130					0.12301621716505906
IARKVDKKRL	10	Unmodified	_IARKVDKKRL_					0	0	0			REV__ENSG00000171054|ENST00000338616|OR13H1	REV__ENSG00000171054|ENST00000338616|OR13H1	MULTI-MSMS	OvCa9_classI_Rep2	2	409.607666015625	3	409.606701	1225.79827	0.6889	0.00028218	2.4344	0.00099713	3.1233	0.0012793	409.60766459120623	104.29	12.102	103.72	103.28	115.38	-0.57639					699	244	5	0	0	0	0.61634	1	9737	9737		40.058	2.55	1	1628000	+		17157	21589	14001	14023	19131	19131					0.19440728613380998
IARNLTQQL	9	Unmodified	_IARNLTQQL_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;PLIN2|p.Q379Lfs*8|1|0.08|ENSG00000147872|chr9:19116426-19116427|-/TGTTTTCATGGAGA|frameshift_variant	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	OvCa9_classI_Rep2	2	528.8119506835938	2	528.811648	1055.60874	-0.062873	-3.3248E-05	-0.52615	-0.00027823	-0.58902	-0.00031148	528.8113288616643	70.971	2.596	68.4	67.663	70.259	-2.5707					112	49	4	0	0	0	0.075543	3	5700	5700;5705;5710		104.06	13.687	1	775680			17158	5378	14002	14024	19132;19133;19134	19132					0.08316236600194316
IARNLTQQL	9	Unmodified	_IARNLTQQL_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;PLIN2|p.Q379Lfs*8|1|0.08|ENSG00000147872|chr9:19116426-19116427|-/TGTTTTCATGGAGA|frameshift_variant	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.8128662109375	2	528.811648	1055.60874	-1.9092	-0.0010096	0.57525	0.0003042	-1.3339	-0.00070538	528.8120904285146	71.989	2.2749	68.533	68.222	70.497	-3.4563					103	46	5	0	0	0	0.035142	5	5528	5505;5515;5528;5540;5561		131.03	30.499	1	2666800			17159	5378	14002	14024	19135;19136;19137;19138;19139	19137					0.08316236600194316
IARNLTQQL	9	Unmodified	_IARNLTQQL_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;PLIN2|p.Q379Lfs*8|1|0.08|ENSG00000147872|chr9:19116426-19116427|-/TGTTTTCATGGAGA|frameshift_variant	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MATCH	OvCa99_classI_Rep5	1		2	528.811648	1055.60874	-0.16784	-8.8758E-05	-0.6502	-0.00034383	-0.81804	-0.00043259	528.8110161469141	68.794	0.37507	68.794	68.564	68.939	0	0.28871	-0.0004028	NaN	131.03	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	621180			17160	5378	14002	14024							0.08316236600194316
IARNLTQQL	9	Unmodified	_IARNLTQQL_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;PLIN2|p.Q379Lfs*8|1|0.08|ENSG00000147872|chr9:19116426-19116427|-/TGTTTTCATGGAGA|frameshift_variant	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	528.811648	1055.60874	0.13603	7.1935E-05	-0.40374	-0.0002135	-0.26771	-0.00014157	528.8114212957936	71.014	1.102	68.295	68.06	69.162	-2.7196	-0.21084	-0.00014214	NaN	131.03	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83337			17161	5378	14002	14024							0.08316236600194316
IARPWKLIYYR	11	Unmodified	_IARPWKLIYYR_					0	0	0		ENSG00000125482|ENST00000334270|TTF1	ENSG00000125482|ENST00000334270|TTF1	ENSG00000125482|ENST00000334270|TTF1	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.8010559082031	3	493.625873	1477.85579	-0.24487	-0.00012087	3.1428	0.0015514	2.898	0.0014305	493.6275046803943	57.194	0.79372	54.402	54.129	54.922	-2.792					31	15	3	0	0	0	0.026435	1	4037	4037		6.001	2.7897	1	33520			17162	3711	14003	14025	19140	19140					0.13597570818956228
IARPWKLIYYR	11	Unmodified	_IARPWKLIYYR_					0	0	0		ENSG00000125482|ENST00000334270|TTF1	ENSG00000125482|ENST00000334270|TTF1	ENSG00000125482|ENST00000334270|TTF1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	493.625873	1477.85579	0.1121	5.5335E-05	3.1314	0.0015457	3.2435	0.0016011	493.62719772452124	57.916	0.60558	54.571	54.393	54.999	-3.3449	0.084212	-1.0515E-05	NaN	3.2113	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40603			17163	3711	14003	14025							0.13597570818956228
IARRESDK	8	Unmodified	_IARRESDK_					0	0	0			REV__ENSG00000180815|ENST00000338883|MAP3K15	REV__ENSG00000180815|ENST00000338883|MAP3K15	MULTI-SECPEP	OvCa9_classI_Rep3	3	488.2852478027344	2	487.772522	973.530492	-1.4194	-0.00069233	-2.3075	-0.0011255	-3.7268	-0.0018178	487.7708329474746	101.25	0.26207	99.649	99.446	99.708	-1.6053					9	4	3	0	0	0	0.028476	1	6895	6895		55.504	16.698	1	9482.2	+		17164	22198	14004	14026	19141	19141					0.042668040149465014
IARRKEELK	9	Unmodified	_IARRKEELK_					0	0	0			REV__nc|ENSG00000118200|Q08AD1-2|CAMSAP2	REV__nc|ENSG00000118200|Q08AD1-2|CAMSAP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.2984619140625	2	571.853847	1141.69314	-0.77644	-0.00044401	3.9746	0.0022729	3.1981	0.0018289	571.8559352018508	66.217	0.71637	66.217	65.984	66.7	0					41	17	3	0	0	0	0.027462	1	6182	6182		21.96	9.7532	1	920270	+		17165	18384	14005	14027	19142	19142					0.12796187416915927
IARVQLLAL	9	Unmodified	_IARVQLLAL_					0	0	0			REV__ENSG00000159399|ENST00000290573|HK2;REV__nc|ENSG00000156515|P19367-4|HK1	REV__nc|ENSG00000156515|P19367-4|HK1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.832275390625	2	498.831852	995.649151	-0.21545	-0.00010747	-0.44471	-0.00022183	-0.66015	-0.00032931	498.8316195195434	72.795	2.813	70.307	69.884	72.697	-2.4873					132	56	5	0	0	0	0.29717	1	3492	3492		63.306	2.9026	1	2522500	+		17166	20485;20613	14006	14028	19143	19143					0.15115202990614307
IASDSCVGSPR	11	Unmodified	_IASDSCVGSPR_					0	0	0			REV__nc|ENSG00000171790|Q499Z3-3|SLFNL1	REV__nc|ENSG00000171790|Q499Z3-3|SLFNL1	MULTI-SECPEP	OvCa9_classI_Rep2	2	546.8101196289062	2	546.26113	1090.50771	-0.35811	-0.00019562	1.8821	0.0010281	1.524	0.00083248	546.2631119823292	77.633	0.36694	75.843	75.623	75.99	-1.7894					11	6	3	0	0	0	0.025306	1	6466	6466		53.089	21.559	1	14428	+		17167	21644	14007	14029	19144	19144					-0.03392583164827556
IASHLQVI	8	Unmodified	_IASHLQVI_					0	0	0		ENST00000312475.4_1_15:89002726-89002834:-|nuORF	ENST00000312475.4_1_15:89002726-89002834:-|nuORF	ENST00000312475.4_1_15:89002726-89002834:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	440.767333984375	2	440.766178	879.517802	3.1287	0.001379	-1.2674	-0.00055862	1.8613	0.00082041	440.76559966960843	81.948	3.3093	81.948	81.613	84.923	0					178	78	5	0	0	0	0.37872	1	8500	8500		92.191	3.5478	1	37297000			17168	10309	14008	14030	19145	19145					0.07322392622711504
IASIFGYDI	9	Unmodified	_IASIFGYDI_					0	0	0			REV__ENSG00000164841|ENST00000297459|TMEM74	REV__ENSG00000164841|ENST00000297459|TMEM74	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.3249816894531	2	499.7633	997.512048	-0.02047	-1.023E-05	-3.1895	-0.001594	-3.2099	-0.0016042	499.76124016250736	52.863	0.82664	52.863	52.478	53.305	0					38	18	3	0	0	0	0.027462	1	4134	4134		23.042	0	1	622310	+		17169	21025	14009	14031	19146	19146					0.013192493203860067
IASKPLTL	8	Unmodified	_IASKPLTL_					0	0	0		PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant;ENSG00000205038|ENST00000378402|PKHD1L1;PKHD1L1|p.W985Kfs*40|1|0.06|ENSG00000205038|chr8:109427107-109427108|-/CAAGACCACATCTCATGCTCCTTTGCCTCTCT|frameshift_variant;PKHD1L1|p.M2145Rfs*71|1|0.16|ENSG00000205038|chr8:109452207-109452207|T/-|frameshift_variant	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	421.77203369140625	2	421.770929	841.527304	-0.19804	-8.3526E-05	0.083397	3.5175E-05	-0.11464	-4.8352E-05	421.7708096735269	75.319	1.3935	72.088	71.773	73.167	-3.2308					58	28	3	0	0	0	0.22496	2	5921	5921;5933		120.62	23.148	1	437220			17170	9047	14010	14032	19147;19148	19147					0.10020160908231901
IASKPLTL	8	Unmodified	_IASKPLTL_					0	0	0		PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant;ENSG00000205038|ENST00000378402|PKHD1L1;PKHD1L1|p.W985Kfs*40|1|0.06|ENSG00000205038|chr8:109427107-109427108|-/CAAGACCACATCTCATGCTCCTTTGCCTCTCT|frameshift_variant;PKHD1L1|p.M2145Rfs*71|1|0.16|ENSG00000205038|chr8:109452207-109452207|T/-|frameshift_variant	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	421.770929	841.527304	-0.29884	-0.00012604	0.54698	0.0002307	0.24814	0.00010466	421.7710047271064	74.286	1.7762	72.315	71.693	73.469	-1.9711	0.11355	0.0001197	NaN	120.62	72	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158350			17171	9047	14010	14032							0.10020160908231901
IASLQEELK	9	Unmodified	_IASLQEELK_					0	0	0		nc|ENSG00000163681|Q14BN4-4|SLMAP;nc|ENSG00000163681|Q14BN4-8|SLMAP;nc|ENSG00000163681|Q14BN4-5|SLMAP;nc|ENSG00000163681|Q14BN4-3|SLMAP;nc|ENSG00000163681|Q14BN4|SLMAP;ENSG00000163681|ENST00000671191|SLMAP;nc|ENSG00000163681|Q14BN4-2|SLMAP	nc|ENSG00000163681|Q14BN4-4|SLMAP;nc|ENSG00000163681|Q14BN4-3|SLMAP	nc|ENSG00000163681|Q14BN4-3|SLMAP	MULTI-MSMS	OvCa99_classI_Rep5	1	515.7949829101562	2	515.792589	1029.57063	1.359	0.00070095	1.0287	0.00053061	2.3877	0.0012316	515.7928821729548	92.391	0.54483	92.391	92.132	92.677	0					28	12	5	0	0	0	0.18193	1	9977	9977		79.451	0	1	1708800			17172	6345;15140	14011	14033	19149	19149					0.05702305894828896
IASRDQGLA	9	Unmodified	_IASRDQGLA_					0	0	0			REV__ENSG00000132874|ENST00000255226|SLC14A2	REV__ENSG00000132874|ENST00000255226|SLC14A2	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.75335693359375	2	465.753798	929.493044	-0.081161	-3.7801E-05	-3.8228	-0.0017805	-3.904	-0.0018183	465.7514399168433	47.319	2.4038	44.246	42.876	45.279	-3.0724					87	46	3	0	0	0	0.19716	1	2570	2570		76.847	4.9692	1	2414500	+		17173	19110	14012	14034	19150	19150					0.02547712749344555
IASRYDCKI	9	Unmodified	_IASRYDCKI_					0	0	0		tr|A0A553SRJ5|A0A553SRJ5_NIACIHPrfamilyphosphocarrierproteinOS=NialliacirculansOX=1397GN=CEQ21_01070PE=4SV=1	tr|A0A553SRJ5|A0A553SRJ5_NIACIHPrfamilyphosphocarrierproteinOS=NialliacirculansOX=1397GN=CEQ21_01070PE=4SV=1	tr|A0A553SRJ5|A0A553SRJ5_NIACIHPrfamilyphosphocarrierproteinOS=NialliacirculansOX=1397GN=CEQ21_01070PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	534.7769775390625	2	534.778959	1067.54336	-1.5	-0.00080218	-2.7723	-0.0014826	-4.2723	-0.0022848	534.7775545384593	75.57	3.0209	73.716	73.323	76.344	-1.854					181	57	5	0	0	0	0.11471	2	6249	6237;6249		93.195	4.5526	1	9466200			17174	34270	14013	14035	19151;19152	19152					0.012294990828195296
IASVATVVFL	10	Unmodified	_IASVATVVFL_					0	0	0			REV__ENSG00000180488|ENST00000370791|MIGA1	REV__ENSG00000180488|ENST00000370791|MIGA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.3096618652344	2	510.310418	1018.60628	-2.5279	-0.00129	2.5124	0.0012821	-0.015515	-7.9176E-06	510.31151958350677	126.07	1.2741	124.65	124.34	125.61	-1.4143					54	25	4	0	0	0	0.71192	1	12037	12037		29.15	7.1897	1	109760	+		17175	22177	14014	14036	19153	19153					0.09772388142516775
IATGAKVLGSI	11	Unmodified	_IATGAKVLGSI_					0	0	0		tr|A0A553SHC5|A0A553SHC5_NIACISerineacetyltransferaseOS=NialliacirculansOX=1397GN=cysEPE=3SV=1	tr|A0A553SHC5|A0A553SHC5_NIACISerineacetyltransferaseOS=NialliacirculansOX=1397GN=cysEPE=3SV=1	tr|A0A553SHC5|A0A553SHC5_NIACISerineacetyltransferaseOS=NialliacirculansOX=1397GN=cysEPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	514.797607421875	2	515.318774	1028.623	-0.23318	-0.00012016	-1.1635	-0.00059957	-1.3967	-0.00071973	515.3173511109192	117.66	1.0895	116.63	116.04	117.13	-1.0324					49	21	3	0	0	0	0.025306	1	8881	8881		53.089	22.771	1	50180			17176	33257	14015	14037	19154	19154					0.1098288902846889
IATGAKVLGSI	11	Unmodified	_IATGAKVLGSI_					0	0	0		tr|A0A553SHC5|A0A553SHC5_NIACISerineacetyltransferaseOS=NialliacirculansOX=1397GN=cysEPE=3SV=1	tr|A0A553SHC5|A0A553SHC5_NIACISerineacetyltransferaseOS=NialliacirculansOX=1397GN=cysEPE=3SV=1	tr|A0A553SHC5|A0A553SHC5_NIACISerineacetyltransferaseOS=NialliacirculansOX=1397GN=cysEPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.318774	1028.623	-0.81921	-0.00042215	-5.3041	-0.0027333	-6.1233	-0.0031555	515.3169774457222	116.78	0.89058	116.65	116.12	117.01	-0.12868	0.06097	-0.004149	NaN	53.089	31	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55192			17177	33257	14015	14037							0.1098288902846889
IATIRFTFIR	10	Unmodified	_IATIRFTFIR_					0	0	0			REV__ENST00000576468.1_1_16:3241284-3274614:+|nuORF	REV__ENST00000576468.1_1_16:3241284-3274614:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	619.37158203125	2	619.374415	1236.73428	-5.5105	-0.0034131	1.4108	0.0008738	-4.0997	-0.0025393	619.3751482919054	158.89	0.97121	158.66	158.38	159.35	-0.22696					37	18	3	0	0	0	0.83835	1	16150	16150		14.137	3.2716	1	60403	+		17178	27785	14016	14038	19155	19155					0.12537948456406411
IATKAATEEP	10	Unmodified	_IATKAATEEP_					0	0	0		nc|ENSG00000152894|Q15262|PTPRK	nc|ENSG00000152894|Q15262|PTPRK	nc|ENSG00000152894|Q15262|PTPRK	MULTI-MSMS	OvCa99_classI_Rep5	1	515.7735595703125	2	515.774396	1029.53424	0.90793	0.00046829	-1.4422	-0.00074384	-0.53425	-0.00027555	515.7736562753566	155.48	0.66565	155.48	155.17	155.84	0					24	12	3	0	0	0	0.49558	1	18207	18207		54.776	1.4249	1	143610			17179	15103	14017	14039	19156	19156					0.02065428998139396
IATLLQVWKN	10	Unmodified	_IATLLQVWKN_					0	0	0		tr|A0A553SIQ4|A0A553SIQ4_NIACIPurinepermeaseOS=NialliacirculansOX=1397GN=CEQ21_15300PE=3SV=1	tr|A0A553SIQ4|A0A553SIQ4_NIACIPurinepermeaseOS=NialliacirculansOX=1397GN=CEQ21_15300PE=3SV=1	tr|A0A553SIQ4|A0A553SIQ4_NIACIPurinepermeaseOS=NialliacirculansOX=1397GN=CEQ21_15300PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	593.3551025390625	2	593.353148	1184.69174	1.1411	0.00067708	-0.056865	-3.3741E-05	1.0842	0.00064334	593.3531527146092	150.67	0.85022	150.67	150.24	151.09	0					27	16	3	0	0	0	0.50999	1	17644	17644		52.937	3.4952	1	105830			17180	33411	14018	14040	19157	19157					0.1067855332819363
IATLRAYVL	9	Unmodified	_IATLRAYVL_					0	0	0		ENSG00000154237|ENST00000388948|LRRK1;LRRK1|p.D987Efs*12|1|0.21|ENSG00000154237|chr15:101029229-101029230|-/G|frameshift_variant;ENST00000531270.5_1_15:101565016-101589971:+|nuORF;ENST00000525284.5_1_15:101565016-101602660:+|nuORF	ENSG00000154237|ENST00000388948|LRRK1	ENSG00000154237|ENST00000388948|LRRK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.76422119140625	2	510.316035	1018.61752	0.51904	0.00026487	2.8368	0.0014477	3.3558	0.0017125	510.31727125808106	33.104	0.79574	30.409	30.003	30.799	-2.6954					23	15	2	0	0	0	0.027462	1	869	869		23.042	9.2672	1	20955			17181	5721	14019	14041	19158	19158					0.10895210236662933
IATWAFPMR	9	Unmodified	_IATWAFPMR_					0	0	0			REV__nc|ENSG00000116641|Q96N67-4|DOCK7	REV__nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.8236083984375	2	546.786587	1091.55862	0.98044	0.00053609	3.4284	0.0018746	4.4089	0.0024107	546.7883934086215	86.002	0.98393	83.355	82.709	83.693	-2.6463					31	19	2	0	0	0	0.027455	1	7219	7219		60.972	6.2073	1	37865	+		17182	18308	14020	14042	19159	19159					0.016504106706634047
IATYRYVQ	8	Unmodified	_IATYRYVQ_					0	0	0			REV__ENST00000489338.6_1_6:88125312-88173965:+|nuORF	REV__ENST00000489338.6_1_6:88125312-88173965:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.2724914550781	2	507.274367	1012.53418	1.4708	0.00074611	-1.555	-0.0007888	-0.084153	-4.2689E-05	507.2736608620184	89.045	1.331	87.677	87.086	88.417	-1.3676					76	26	4	0	0	0	0.64026	2	7849	7849;7854		55.504	2.3672	1	457450	+		17183	23614	14021	14043	19160;19161	19160					0.028414737888056152
IAVAIATVIV	10	Unmodified	_IAVAIATVIV_					0	0	0		nc|ENSG00000084234|Q06481-4|APLP2;nc|ENSG00000084234|Q06481-2|APLP2;ENSG00000084234|ENST00000338167|APLP2;nc|ENSG00000084234|Q06481-6|APLP2;nc|ENSG00000084234|Q06481|APLP2;nc|ENSG00000084234|Q06481-5|APLP2;ENST00000533860.5_1_11:130009456-130013340:+|nuORF	nc|ENSG00000084234|Q06481-4|APLP2	nc|ENSG00000084234|Q06481-4|APLP2	MULTI-MSMS	OvCa99_classI_Rep5	1	485.3221435546875	2	485.320786	968.627018	1.7074	0.00082862	0.54707	0.00026551	2.2544	0.0010941	485.3208414972816	108.84	0.87442	108.84	108.58	109.46	0					35	19	3	0	0	0	0.52321	1	12335	12335		51.335	3.4199	1	968270			17184	1713	14022	14044	19162	19162					0.14144978522188012
IAVESAKTAR	10	Unmodified	_IAVESAKTAR_					0	0	0		tr|A0A553SI53|A0A553SI53_NIACIPhosphateacetyltransferaseOS=NialliacirculansOX=1397GN=ptaPE=3SV=1	tr|A0A553SI53|A0A553SI53_NIACIPhosphateacetyltransferaseOS=NialliacirculansOX=1397GN=ptaPE=3SV=1	tr|A0A553SI53|A0A553SI53_NIACIPhosphateacetyltransferaseOS=NialliacirculansOX=1397GN=ptaPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3034057617188	2	523.303655	1044.59276	-2.1228	-0.0011108	2.0352	0.001065	-0.087543	-4.5811E-05	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.79213	1	11496	11496		19.997	0.89325	1	183010			17185	33346	14023	14045	19163	19163					0.07224530363282611
IAVETVVRNLK	11	Unmodified	_IAVETVVRNLK_					0	0	0			REV__tr|A0A7D6ZRQ2|A0A7D6ZRQ2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13105PE=4SV=1	REV__tr|A0A7D6ZRQ2|A0A7D6ZRQ2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13105PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	414.59027099609375	3	414.590717	1240.75032	0.002839	1.177E-06	1.5818	0.00065579	1.5846	0.00065696	414.5912032100085	57.072	1.3406	54.28	53.832	55.173	-2.792					73	26	3	0	0	0	0.52474	1	4050	4050		51.528	2.9262	1	128050	+		17186	32163	14024	14046	19164	19164					0.13957609902649892
IAVGVAFIIP	10	Unmodified	_IAVGVAFIIP_					0	0	0			REV__tr|A0A553SR93|A0A553SR93_NIACIPTSglucosetransportersubunitIIBOS=NialliacirculansOX=1397GN=CEQ21_00450PE=4SV=1	REV__tr|A0A553SR93|A0A553SR93_NIACIPTSglucosetransportersubunitIIBOS=NialliacirculansOX=1397GN=CEQ21_00450PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.3089599609375	2	500.315503	998.616454	-1.341	-0.00067094	-2.8629	-0.0014324	-4.204	-0.0021033	500.31386333270984	33.345	0.69947	30.635	30.42	31.119	-2.7097					20	13	2	0	0	0	0.027265	1	1157	1157		19.36	0	1	16881	+		17187	30706	14025	14047	19165	19165					0.11708995867752492
IAVIVPKDL	9	Unmodified	_IAVIVPKDL_					0	0	0			REV__tr|A0A7D6VNU6|A0A7D6VNU6_9CLOTShort-chain-enoyl-CoAhydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_20395PE=3SV=1	REV__tr|A0A7D6VNU6|A0A7D6VNU6_9CLOTShort-chain-enoyl-CoAhydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_20395PE=3SV=1	MSMS	OvCa99_classI_Rep5	1	484.258056640625	2	484.312961	966.611368	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.6	1	129.6	129.1	130.1	0								0	0	0	0.18203	1	15031	15031		31.955	1.4512	1		+		17188	31206	14026	14048	19166	19166					0.12672692005139652
IAVKTIGEP	9	Unmodified	_IAVKTIGEP_					0	0	0			REV__tr|A0A553SHQ1|A0A553SHQ1_NIACITelluriumresistanceproteinOS=NialliacirculansOX=1397GN=CEQ21_13400PE=3SV=1	REV__tr|A0A553SHQ1|A0A553SHQ1_NIACITelluriumresistanceproteinOS=NialliacirculansOX=1397GN=CEQ21_13400PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	464.2797546386719	2	464.279118	926.543683	-1.1165	-0.00051838	0.21562	0.00010011	-0.90091	-0.00041828	464.27922622646685	83.429	2.3364	81.168	80.367	82.704	-2.261					163	48	5	0	0	0	0.16524	1	4730	4730		82.305	1.8504	1	6280300	+		17189	29824	14027	14049	19167	19167					0.07747242074333371
IAVLIITFAGF	11	Unmodified	_IAVLIITFAGF_					0	0	0			REV__sp|P06473|GB_HCMVAEnvelopeglycoproteinBOS=Humancytomegalovirus(strainAD169)OX=10360GN=gBPE=1SV=1	REV__sp|P06473|GB_HCMVAEnvelopeglycoproteinBOS=Humancytomegalovirus(strainAD169)OX=10360GN=gBPE=1SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.3126220703125	2	582.854993	1163.69543	1.771	0.0010322	0.10943	6.3784E-05	1.8804	0.001096	582.8549754593803	136.85	0.62376	136.85	136.58	137.21	0					27	12	3	0	0	0	0.025416	1	15936	15936		26.693	0	1	148020	+		17190	29392	14028	14050	19168	19168					0.12013223102030679
IAVQNNQKTPR	11	Unmodified	_IAVQNNQKTPR_					0	0	0			REV__ENSG00000164171|ENST00000296585|ITGA2	REV__ENSG00000164171|ENST00000296585|ITGA2	MULTI-MSMS	OvCa9_classI_Rep4_	4	634.8612670898438	2	634.857118	1267.69968	0.91743	0.00058244	0.92895	0.00058975	1.8464	0.0011722	634.8576710032044	97.52	2.7566	95.141	94.708	97.465	-2.3786					143	53	5	0	0	0	0.69424	1	8706	8706		31.634	0.10446	1	2559000	+		17191	20954	14029	14051	19169	19169					0.07654080577640343
IAWALRDL	8	Unmodified	_IAWALRDL_					0	0	0		nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1;ENST00000505501.1_1_4:56724546-56734701:+|nuORF	nc|ENSG00000090989|Q9NV70-2|EXOC1	nc|ENSG00000090989|Q9NV70-2|EXOC1	MULTI-MSMS	OvCa9_classI_Rep3	3	479.280029296875	2	479.279452	956.544351	-0.4527	-0.00021697	0.44392	0.00021276	-0.0087808	-4.2085E-06	479.2796688729981	96.325	1.9148	94.496	94.027	95.941	-1.8286					106	37	4	0	0	0	0.56113	1	6317	6317		71.378	2.8932	1	3171600			17192	1856	14030	14052	19170	19170					0.06434081514021273
IAWGLRIGPA	10	Unmodified	_IAWGLRIGPA_					0	0	0			REV__tr|A0A553SN18|A0A553SN18_NIACIPLP-dependentaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_23440PE=4SV=1	REV__tr|A0A553SN18|A0A553SN18_NIACIPLP-dependentaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_23440PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.2381591796875	2	527.313826	1052.6131	-1.2059	-0.00063588	0.93933	0.00049532	-0.26655	-0.00014056	527.314037355619	104.02	1.5611	101.9	101.54	103.1	-2.1192					81	29	4	0	0	0	0.026939	1	9372	9372		24.203	7.7296	1	242860	+		17193	30387	14031	14053	19171	19171					0.08889745813735317
IAWGLRIGPA	10	Unmodified	_IAWGLRIGPA_					0	0	0			REV__tr|A0A553SN18|A0A553SN18_NIACIPLP-dependentaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_23440PE=4SV=1	REV__tr|A0A553SN18|A0A553SN18_NIACIPLP-dependentaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_23440PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	527.313826	1052.6131	-0.51151	-0.00026972	0.037614	1.9834E-05	-0.47389	-0.00024989	527.3135787299749	103.29	2.0388	101.85	101.19	103.23	-1.4347	-0.023567	-0.00054586	NaN	24.203	94	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280650	+		17194	30387	14031	14053							0.08889745813735317
IAYFCCFPI	9	Unmodified	_IAYFCCFPI_					0	0	0			REV__ENSG00000280021|ENST00000624103|OR51F1	REV__ENSG00000280021|ENST00000624103|OR51F1	MULTI-MSMS	OvCa99_classI_Rep5	1	538.7507934570312	2	538.750824	1075.4871	2.53	0.001363	-3.8654	-0.0020825	-1.3354	-0.00071945	538.7483908310519	121.47	1.0711	121.47	120.97	122.04	0					40	23	3	0	0	0	0.32242	1	13984	13984		60.404	7.0522	1	215710	+		17195	23657	14032	14054	19172	19172					-0.047628450782212894
IAYFCCFPI	9	Unmodified	_IAYFCCFPI_					0	0	0			REV__ENSG00000280021|ENST00000624103|OR51F1	REV__ENSG00000280021|ENST00000624103|OR51F1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	538.750824	1075.4871	2.53	0.001363	-3.8654	-0.0020825	-1.3354	-0.00071945	538.7483908310519	121.47	1.0711	121.47	120.97	122.04	0	0	0	NaN	60.404	40	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215710	+		17196	23657	14032	14054							-0.047628450782212894
IAYNPNGNAL	10	Unmodified	_IAYNPNGNAL_					0	0	0		ENST00000543420.5_1_12:10464095-10467389:+|nuORF;ENST00000539374.1_1_12:10464095-10467389:+|nuORF;nc|ENSG00000134539|Q13241-3|KLRD1;ENSG00000134539|ENST00000336164|KLRD1;nc|ENSG00000134539|Q13241-2|KLRD1	ENST00000543420.5_1_12:10464095-10467389:+|nuORF	ENST00000543420.5_1_12:10464095-10467389:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	523.7686157226562	2	523.766906	1045.51926	1.6672	0.00087323	0.71547	0.00037474	2.3827	0.001248	523.7672072847756	85.605	0.57369	85.605	85.38	85.954	0					36	13	4	0	0	0	0.3976	1	8984	8984		68.787	7.8149	1	1992400			17197	4308	14033	14055	19173	19173					-0.0016801807919364364
IAYYQENI	8	Unmodified	_IAYYQENI_					0	0	0		tr|A0A553ST98|A0A553ST98_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04570PE=3SV=1	tr|A0A553ST98|A0A553ST98_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04570PE=3SV=1	tr|A0A553ST98|A0A553ST98_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04570PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.2930908203125	2	507.250557	1012.48656	0.47125	0.00023904	-4.1742	-0.0021173	-3.7029	-0.0018783	507.24849330679126	110.57	0.73626	108.97	108.7	109.44	-1.6011					22	13	2	0	0	0	0.028476	1	10169	10169		73.975	33.402	1	23637			17198	34471	14034	14056	19174	19174					-0.019182252020527812
IAYYQENI	8	Unmodified	_IAYYQENI_					0	0	0		tr|A0A553ST98|A0A553ST98_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04570PE=3SV=1	tr|A0A553ST98|A0A553ST98_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04570PE=3SV=1	tr|A0A553ST98|A0A553ST98_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04570PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	507.250557	1012.48656	-0.16046	-8.1393E-05	-3.5446	-0.001798	-3.7051	-0.0018794	507.2486232466489	109.22	0.84081	109.04	108.72	109.56	-0.17237	0.038626	0.00031354	NaN	73.975	23	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13168			17199	34471	14034	14056							-0.019182252020527812
ICAHPKEIK	9	Unmodified	_ICAHPKEIK_					0	0	0			REV__ZNF614|p.V332Ifs*19|1|0.03|ENSG00000142556|chr19:52016604-52016605|-/GCTGATGTAT|frameshift_variant	REV__ZNF614|p.V332Ifs*19|1|0.03|ENSG00000142556|chr19:52016604-52016605|-/GCTGATGTAT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	519.79296875	2	519.791869	1037.56919	1.5307	0.00079564	2.0914	0.0010871	3.6221	0.0018827	519.7927708482009	121.53	4.9018	120.5	119.85	124.76	-1.0286					197	93	4	0	0	0	0.48324	1	9391	9391		44.117	1.7207	1	827300	+		17200	19791	14035	14057	19175	19175					0.0519039332509692
ICATQNQLPSG	11	Unmodified	_ICATQNQLPSG_					0	0	0			REV__ENSG00000065060|ENST00000192788|BLTP3A	REV__ENSG00000065060|ENST00000192788|BLTP3A	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.3176879882812	2	566.27678	1130.53901	0.15593	8.8301E-05	-2.5448	-0.001441	-2.3888	-0.0013527	566.275334343604	56.658	0.53935	56.658	56.422	56.961	0					30	12	3	0	0	0	0.024066	1	4686	4686		93.598	0	1	702200	+		17201	16783	14036	14058	19176	19176					-0.02104010130756251
ICCCLAGLL	9	Unmodified	_ICCCLAGLL_					0	0	0			REV__ENSG00000095564|ENST00000265990|BTAF1	REV__ENSG00000095564|ENST00000265990|BTAF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	454.3031005859375	2	454.723752	907.432952	1.1581	0.00052663	0.41925	0.00019064	1.5774	0.00071727	454.72384098326194	97.57	0.96063	95.191	94.91	95.871	-2.3786					23	18	2	0	0	0	0.027462	1	8718	8718		29.842	8.1392	1	35773	+		17202	17292	14037	14059	19177	19177					-0.02446760501402423
ICCKLFGTV	9	Carbamidomethyl (C)	_ICC(Carbamidomethyl (C))KLFGTV_	IC(0.033)C(0.967)KLFGTV		IC(-15)C(15)KLFGTV		0	1	0			REV__nc|ENSG00000151665|Q07326-2|PIGF	REV__nc|ENSG00000151665|Q07326-2|PIGF	MULTI-MSMS	OvCa9_classI_Rep2	2	520.7667846679688	2	520.767006	1039.51946	-0.29569	-0.00015399	-0.8941	-0.00046562	-1.1898	-0.0006196	520.7664487988831	76.367	3.2453	74.513	73.837	77.082	-1.854					155	62	5	0	0	0	0.33652	1	6310	6310		58.782	9.3404	2	1235300	+		17203	20246	14038	14060	19178	19178	222				0.0012794232482065127
ICEEQNPEAE	10	Unmodified	_ICEEQNPEAE_					0	0	0		ENSG00000109265|ENST00000682029|CRACD	ENSG00000109265|ENST00000682029|CRACD	ENSG00000109265|ENST00000682029|CRACD	MULTI-SECPEP	OvCa9_classI_Rep4_	4	581.3103637695312	2	581.240061	1160.46557	-0.73688	-0.0004283	-1.5861	-0.0009219	-2.323	-0.0013502	581.239077836249	56.29	1.012	52.995	52.769	53.781	-3.2944					29	19	2	0	0	0	0.026674	1	3573	3573		65.465	1.9315	1	84159			17204	2705	14039	14061	19179	19179					-0.1082460336388067
ICEEQNPEAE	10	Unmodified	_ICEEQNPEAE_					0	0	0		ENSG00000109265|ENST00000682029|CRACD	ENSG00000109265|ENST00000682029|CRACD	ENSG00000109265|ENST00000682029|CRACD	MULTI-MATCH	OvCa9_classI_Rep2	2		2	581.240061	1160.46557	-1.2404	-0.00072095	-0.86098	-0.00050044	-2.1013	-0.0012214	581.2394308812366	55.757	0.69277	52.953	52.731	53.424	-2.804	-0.021108	0.00058232	NaN	65.465	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21724			17205	2705	14039	14061							-0.1082460336388067
ICIAMFTAAVL	11	Unmodified	_ICIAMFTAAVL_					0	0	0		L1MB3_dup16926|chr22:15811040-15811839:+|1.0764931184738016|0.3095763404933719|1.8|423.0|27|3|sense	L1MB3_dup16926|chr22:15811040-15811839:+|1.0764931184738016|0.3095763404933719|1.8|423.0|27|3|sense	L1MB3_dup16926|chr22:15811040-15811839:+|1.0764931184738016|0.3095763404933719|1.8|423.0|27|3|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	576.8114013671875	2	576.811413	1151.60827	-1.1461	-0.00066106	0.97518	0.00056249	-0.17087	-9.8563E-05	576.8119042924803	124.07	1.0647	122.68	122.37	123.44	-1.3908					40	20	3	0	0	0	0.68684	1	11763	11763		34.173	1.3601	1	61017			17206	14598	14040	14062	19180	19180					0.03853357564457838
ICISRDFL	8	Unmodified	_ICISRDFL_					0	0	0		ENST00000590127.5_1_18:44407908-44497416:-|nuORF;nc|ENSG00000078043|O75928-2|PIAS2;ENSG00000078043|ENST00000585916|PIAS2;ENST00000589819.1_1_18:44426648-44444164:-|nuORF;nc|ENSG00000078043|O75928-3|PIAS2;ENST00000592011.5_1_18:44416318-44500057:-|nuORF	ENST00000590127.5_1_18:44407908-44497416:-|nuORF	ENST00000590127.5_1_18:44407908-44497416:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	483.7574768066406	2	483.757495	965.500437	-0.55005	-0.00026609	1.5607	0.00075502	1.0107	0.00048893	483.7581117979979	133.25	1.079	132.13	131.88	132.96	-1.1249					46	21	3	0	0	0	0.66057	1	10710	10710		51.335	3.4199	1	117690			17207	1582	14041	14063	19181	19181					0.016307290253848805
ICITCPEIK	9	Unmodified	_ICITCPEIK_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	OvCa99_classI_Rep5	1	510.26739501953125	2	510.266838	1018.51912	2.5275	0.0012897	-1.0288	-0.00052496	1.4987	0.00076476	510.2662063391643	80.462	0.67654	80.462	80.234	80.91	0					32	15	3	0	0	0	0.12365	1	8243	8243		90.777	5.6158	1	1929100			17208	4517	14042	14064	19182	19182					0.0106052260495062
ICKMVPFVQ	9	Unmodified	_ICKMVPFVQ_					0	0	0		ENST00000512235.1_1_4:122261523-122301889:-|nuORF;ENSG00000186867|ENST00000394427|QRFPR	ENST00000512235.1_1_4:122261523-122301889:-|nuORF	ENST00000512235.1_1_4:122261523-122301889:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	532.7879638671875	2	532.785198	1063.55584	0.031521	1.6794E-05	-1.1677	-0.00062215	-1.1362	-0.00060536	532.7845997903096	70.969	1.7607	70.969	70.447	72.208	0					103	43	3	0	0	0	0.46377	1	6812	6812		45.952	3.0877	1	58304000			17209	8369	14043	14065	19183	19183					0.026608192215007875
ICKPLHCLS	9	Unmodified	_ICKPLHCLS_					0	0	0		ENSG00000205330|ENST00000642104|OR6C1	ENSG00000205330|ENST00000642104|OR6C1	ENSG00000205330|ENST00000642104|OR6C1	MULTI-MSMS	OvCa99_classI_Rep5	1	507.2662353515625	2	507.267173	1012.51979	2.3926	0.0012137	-1.5112	-0.0007666	0.8814	0.0004471	507.2663716484462	84.686	0.99163	84.686	84.431	85.422	0					49	23	4	0	0	0	0.40667	1	8874	8874		51.335	1.7994	1	2350300			17210	9067	14044	14066	19184	19184					0.014033620446411987
ICLLRYGQL	9	Unmodified	_ICLLRYGQL_					0	0	0		ENST00000431593.5_1_2:85826201-85828246:-|nuORF;nc|ENSG00000168890|Q86TG1-2|TMEM150A;ENST00000444380.5_1_2:85826201-85828277:-|nuORF;ENSG00000168890|ENST00000334462|TMEM150A	ENST00000431593.5_1_2:85826201-85828246:-|nuORF	ENST00000431593.5_1_2:85826201-85828246:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.3341674804688	2	539.807519	1077.60049	2.3017	0.0012425	3.5963	0.0019413	5.8979	0.0031838	539.8089921498001	111.71	1.1847	110.61	110.3	111.48	-1.1038					77	23	5	0	0	0	0.027462	1	8144	8144		47.916	0	1	146580			17211	6952	14045	14067	19185	19185					0.064789663592137
ICLMFYAL	8	Unmodified	_ICLMFYAL_					0	0	0		ENSG00000146859|ENST00000275767|TMEM140	ENSG00000146859|ENST00000275767|TMEM140	ENSG00000146859|ENST00000275767|TMEM140	MULTI-SECPEP	OvCa9_classI_Rep3	3	487.28253173828125	2	487.247917	972.481282	-0.96511	-0.00047025	-2.1066	-0.0010264	-3.0717	-0.0014967	487.2470790937751	94.983	0.44785	93.087	92.813	93.261	-1.8956					10	8	2	0	0	0	0.028476	1	6161	6161		67.327	0	1	32956			17212	5314	14046	14068	19186	19186					-0.006059435898805532
ICLPARCLL	9	Carbamidomethyl (C)	_ICLPARC(Carbamidomethyl (C))LL_	IC(0.001)LPARC(0.999)LL		IC(-31)LPARC(31)LL		0	1	0			REV__ENST00000368679.8_1_10:127702365-127702623:-|nuORF	REV__ENST00000368679.8_1_10:127702365-127702623:-|nuORF	MSMS	OvCa9_classI_Rep2	2	529.7960815429688	2	529.796097	1057.57764	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.175	1	97.282	96.782	97.782	-0.89305								0	0	0	0.16846	1	8911	8911		55.504	7.8469	2		+		17213	24923	14047	14069	19187	19187	299				0.05115623970073102
ICLPLPRLR	9	Unmodified	_ICLPLPRLR_					0	0	0		ENST00000323116.9_2_3:182638358-182638487:+|nuORF	ENST00000323116.9_2_3:182638358-182638487:+|nuORF	ENST00000323116.9_2_3:182638358-182638487:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	540.8403930664062	2	540.839154	1079.66375	-0.50814	-0.00027482	3.8933	0.0021056	3.3852	0.0018308	540.8411675935439	31.395	0.98717	28.685	28.494	29.481	-2.7097					43	19	3	0	0	0	0.65476	1	951	951		25.45	0.93098	1	162100			17214	10389	14048	14070	19188	19188					0.1271095186709772
ICLTRLQLE	9	Unmodified	_ICLTRLQLE_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	OvCa9_classI_Rep2	2	544.8071899414062	2	544.810259	1087.60597	-0.34732	-0.00018922	-3.5377	-0.0019274	-3.885	-0.0021166	544.807894746868	78.293	2.6731	76.553	75.205	77.878	-1.7398					144	51	4	0	0	0	0.2784	1	6532	6532		65.465	7.2355	1	701020	+		17215	17630	14049	14071	19189	19189					0.06566645151019657
ICMKYMASIS	10	Unmodified	_ICMKYMASIS_					0	0	0			REV__tr|A0A553SSF6|A0A553SSF6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03035PE=4SV=1	REV__tr|A0A553SSF6|A0A553SSF6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03035PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.7899169921875	2	573.771431	1145.52831	-0.30833	-0.00017691	0.75634	0.00043397	0.44801	0.00025706	573.7720381976109	30.309	0.24662	30.309	30.236	30.483	0					6	4	2	0	0	0	0.027149	1	1150	1150		69.628	0	1	37277	+		17216	30835	14050	14072	19190	19190					-0.03863452101040821
ICMNLYYFL	9	Carbamidomethyl (C)	_IC(Carbamidomethyl (C))MNLYYFL_	IC(1)MNLYYFL		IC(41)MNLYYFL		0	1	0			REV__ENST00000269081.8_1_17:67161183-67170443:-|nuORF	REV__ENST00000269081.8_1_17:67161183-67170443:-|nuORF	MSMS	OvCa99_classI_Rep5	1	618.79638671875	2	618.79322	1235.57189	NaN	NaN	NaN	NaN	NaN	NaN	NaN	157.51	1	157.51	157.01	158.01	0								0	0	0	0.17575	1	18460	18460		40.573	10.069	1		+		17217	24060	14051	14073	19191	19191	283				-0.036475193322530686
ICMRLIVLS	9	Unmodified	_ICMRLIVLS_					0	0	0		OR5I1|p.E209Cfs*23|1|0.17|ENSG00000167825|chr11:55935777-55935778|-/AATCACAT|frameshift_variant;OR5I1|p.E209Rfs*65|1|0.17|ENSG00000167825|chr11:55935776-55935777|-/T|frameshift_variant;ENSG00000167825|ENST00000301532|OR5I1	OR5I1|p.E209Cfs*23|1|0.17|ENSG00000167825|chr11:55935777-55935778|-/AATCACAT|frameshift_variant	OR5I1|p.E209Cfs*23|1|0.17|ENSG00000167825|chr11:55935777-55935778|-/AATCACAT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.3043823242188	2	524.306298	1046.59804	-1.4584	-0.00076464	2.5912	0.0013586	1.1328	0.00059396	524.3072046310573	127.48	1.0205	126.05	125.74	126.76	-1.4357					26	19	2	0	0	0	0.027462	1	12242	12242		18.324	6.8134	1	24302			17218	6841	14052	14074	19192	19192					0.07660794629896372
ICNICCLDCI	10	Unmodified	_ICNICCLDCI_					0	0	0			REV__ENST00000379619.5_1_2:28639379-28639508:+|nuORF	REV__ENST00000379619.5_1_2:28639379-28639508:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	556.7352905273438	2	556.733991	1111.45343	3.3019	0.0018383	-1.7563	-0.00097779	1.5456	0.00086049	556.7328190534346	102.43	1.2283	102.43	101.95	103.18	0					74	28	4	0	0	0	0.37436	1	11404	11404		71.877	2.2498	1	7694800	+		17219	25163	14053	14075	19193	19193					-0.09783957903937335
ICNICCLDCI	10	Unmodified	_ICNICCLDCI_					0	0	0			REV__ENST00000379619.5_1_2:28639379-28639508:+|nuORF	REV__ENST00000379619.5_1_2:28639379-28639508:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	556.733991	1111.45343	3.3019	0.0018383	-1.7563	-0.00097779	1.5456	0.00086049	556.7328190534346	102.43	1.2283	102.43	101.95	103.18	0	-0.042848	-0.00036114	NaN	71.877	74	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7694800	+		17220	25163	14053	14075							-0.09783957903937335
ICNICCLDCI	10	Unmodified	_ICNICCLDCI_					0	0	0			REV__ENST00000379619.5_1_2:28639379-28639508:+|nuORF	REV__ENST00000379619.5_1_2:28639379-28639508:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	556.733991	1111.45343	-0.2763	-0.00015383	-0.98205	-0.00054674	-1.2584	-0.00070057	556.7331155927236	103.26	1.1344	102.58	102.03	103.17	-0.68459	0.098509	0.00050095	NaN	71.877	36	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19656	+		17221	25163	14053	14075							-0.09783957903937335
ICNICCLDCI	10	Unmodified	_ICNICCLDCI_					0	0	0			REV__ENST00000379619.5_1_2:28639379-28639508:+|nuORF	REV__ENST00000379619.5_1_2:28639379-28639508:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	556.733991	1111.45343	-0.14545	-8.0975E-05	-1.3828	-0.00076987	-1.5283	-0.00085084	556.7330363656575	103.88	1.044	102.45	102.13	103.18	-1.4347	-0.027826	5.4702E-05	NaN	71.877	23	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45943	+		17222	25163	14053	14075							-0.09783957903937335
ICNICCLDCI	10	Unmodified	_ICNICCLDCI_					0	0	0			REV__ENST00000379619.5_1_2:28639379-28639508:+|nuORF	REV__ENST00000379619.5_1_2:28639379-28639508:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	556.733991	1111.45343	0.20585	0.00011461	-1.3023	-0.00072504	-1.0965	-0.00061044	556.733116947285	104.57	0.72958	102.45	102.22	102.95	-2.1192	-0.027836	0.00014436	NaN	71.877	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49458	+		17223	25163	14053	14075							-0.09783957903937335
ICNILVIF	8	Unmodified	_ICNILVIF_					0	0	0			REV__TAS2R13|p.K207Rfs*23|1|0.08|ENSG00000212128|chr12:10908639-10908679|TCTGTGTCCTTTGTAATTGAGTTGCATTTTCTGGAGATGTT/-|frameshift_variant	REV__TAS2R13|p.K207Rfs*23|1|0.08|ENSG00000212128|chr12:10908639-10908679|TCTGTGTCCTTTGTAATTGAGTTGCATTTTCTGGAGATGTT/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	467.78955078125	2	467.775157	933.53576	0.050469	2.3608E-05	2.3953	0.0011204	2.4457	0.0011441	467.77586537753643	44.805	0.49675	42.096	41.752	42.248	-2.7097					14	9	2	0	0	0	0.028476	1	2572	2572		23.037	6.3317	1	10434	+		17224	23248	14054	14076	19194	19194					0.06633391553202728
ICNKLLKPKPE	11	Unmodified	_ICNKLLKPKPE_					0	0	0			REV__tr|A0A7D6VPF5|A0A7D6VPF5_9CLOTStageVsporulationproteinACOS=ClostridiumintestinaleOX=36845GN=spoVACPE=4SV=1	REV__tr|A0A7D6VPF5|A0A7D6VPF5_9CLOTStageVsporulationproteinACOS=ClostridiumintestinaleOX=36845GN=spoVACPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.88330078125	2	641.881216	1281.74788	-2.5182	-0.0016164	4.166	0.002674	1.6478	0.0010577	641.8839546837315	150.47	2.9704	149.03	147.78	150.75	-1.4344					235	64	4	0	0	0	0.72324	1	14863	14863		21.686	1.689	1	344900	+		17225	31244	14055	14077	19195	19195					0.11827438173372684
ICPGARPGPA	10	Unmodified	_ICPGARPGPA_					0	0	0			REV__nc|ENSG00000061938|Q07912|TNK2	REV__nc|ENSG00000061938|Q07912|TNK2	MULTI-MSMS	OvCa99_classI_Rep5	1	469.7478942871094	2	469.747462	937.480371	1.1038	0.00051851	0.0040761	1.9147E-06	1.1079	0.00052043	469.7473923574563	142.55	0.54774	142.55	142.29	142.83	0					17	10	2	0	0	0	0.64063	1	16680	16680		37.159	2.9866	1	91643	+		17226	16747	14056	14078	19196	19196					0.00912978085443683
ICQLVLAWL	9	Unmodified	_ICQLVLAWL_					0	0	0		ENSG00000181023|ENST00000317121|OR56B1	ENSG00000181023|ENST00000317121|OR56B1	ENSG00000181023|ENST00000317121|OR56B1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.8120727539062	2	529.806988	1057.59942	-2.0728	-0.0010982	-2.7237	-0.001443	-4.7965	-0.0025412	529.8060201535684	72.325	0.73006	68.92	68.707	69.437	-3.4047					32	14	3	0	0	0	0.027462	1	5540	5540		33.516	0	1	179570			17227	7914	14057	14079	19197	19197					0.07292751990280522
ICQLVVQL	8	Carbamidomethyl (C)	_IC(Carbamidomethyl (C))QLVVQL_	IC(1)QLVVQL		IC(52)QLVVQL		0	1	0			REV__ENST00000480296.5_1_3:50385794-50386017:-|nuORF	REV__ENST00000480296.5_1_3:50385794-50386017:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	486.77960205078125	2	486.78097	971.547388	2.1455	0.0010444	-3.3429	-0.0016272	-1.1973	-0.00058284	486.7791659805721	121.92	1.0627	121.92	121.57	122.63	0					46	22	3	0	0	0	0.65582	1	14104	14104		52.299	6.3472	1	832560	+		17228	26457	14058	14080	19198	19198	326				0.060475885765413295
ICQRLEDYV	9	Unmodified	_ICQRLEDYV_					0	0	0			REV__ENSG00000153147|ENST00000283131|SMARCA5	REV__ENSG00000153147|ENST00000283131|SMARCA5	MULTI-MSMS	OvCa99_classI_Rep5	1	569.7796020507812	2	569.781699	1137.54884	3.7389	0.0021304	4.0488	0.0023069	7.7877	0.0044373	569.7840090288207	88.362	1.7191	88.362	87.962	89.681	0					106	41	5	0	0	0	0.21395	1	9449	9449		73.975	5.1879	1	51211000	+		17229	20324	14059	14081	19199	19199					-0.014428221253865559
ICREKPKFL	9	Unmodified	_ICREKPKFL_					0	0	0			REV__nc|nan|Q96M02-2|C10orf90	REV__nc|nan|Q96M02-2|C10orf90	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3294677734375	2	567.328619	1132.64269	-2.3399	-0.0013275	4.3821	0.0024861	2.0422	0.0011586	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.68424	1	14459	14459		21.96	1.013	1	241060	+		17230	20385	14060	14082	19200	19200					0.08166941767581193
ICRKIIYLN	9	Unmodified	_ICRKIIYLN_					0	0	0		nc|ENSG00000251192|Q2M3X9-2|ZNF674;ENSG00000251192|ENST00000683375|ZNF674;nc|ENSG00000251192|Q2M3X9|ZNF674	nc|ENSG00000251192|Q2M3X9-2|ZNF674	nc|ENSG00000251192|Q2M3X9-2|ZNF674	MULTI-SECPEP	OvCa9_classI_Rep2	2	567.3485107421875	2	568.336444	1134.65834	1.1044	0.00062769	-4.4853	-0.0025492	-3.3809	-0.0019215	568.3338645164794	90.798	0.92461	89.496	89.176	90.1	-1.302					45	17	3	0	0	0	0.027462	1	8039	8039		30.504	1.3541	1	197030			17231	9421	14061	14083	19201	19201					0.09639228284640922
ICRWRVLGW	9	Unmodified	_ICRWRVLGW_					0	0	0		nc|ENSG00000115705|P07202-7|TPO;nc|ENSG00000115705|P07202-3|TPO	nc|ENSG00000115705|P07202-7|TPO	nc|ENSG00000115705|P07202-7|TPO	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.7667846679688	2	594.826578	1187.6386	1.884	0.0011207	-2.5035	-0.0014892	-0.61949	-0.00036849	594.8248665878326	128.06	0.60352	128.06	127.67	128.28	0					26	12	3	0	0	0	0.027462	1	14802	14802		25.45	0	1	129990			17232	14977	14062	14084	19202	19202					0.05228897064512239
ICSGLAWWDP	10	Unmodified	_ICSGLAWWDP_					0	0	0		ENST00000381297.9_1_X:1583597-1583888:-|nuORF	ENST00000381297.9_1_X:1583597-1583888:-|nuORF	ENST00000381297.9_1_X:1583597-1583888:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	573.3237915039062	2	574.265684	1146.51682	0.089836	5.159E-05	-1.7816	-0.0010231	-1.6918	-0.00097154	574.2646463878397	111.49	0.5265	109.98	109.74	110.26	-1.5111					27	9	4	0	0	0	0.027056	1	10290	10290		35.618	17.356	1	32913			17233	11161	14063	14085	19203	19203					-0.05058189808505631
ICSGLAWWDP	10	Unmodified	_ICSGLAWWDP_					0	0	0		ENST00000381297.9_1_X:1583597-1583888:-|nuORF	ENST00000381297.9_1_X:1583597-1583888:-|nuORF	ENST00000381297.9_1_X:1583597-1583888:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	574.265684	1146.51682	0.29537	0.00016962	-0.73184	-0.00042027	-0.43647	-0.00025065	574.2645632980442	111.06	0.804	109.96	109.55	110.35	-1.1038	-0.030634	0.00056557	NaN	20.947	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20394			17234	11161	14063	14085							-0.05058189808505631
ICSLQGAQLG	10	Unmodified	_ICSLQGAQLG_					0	0	0			REV__nc|ENSG00000133059|Q6XUX3-2|DSTYK	REV__nc|ENSG00000133059|Q6XUX3-2|DSTYK	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.7562255859375	2	495.257859	988.501166	-0.71559	-0.0003544	-3.1376	-0.0015539	-3.8532	-0.0019083	495.2549152211044	55.712	0.70914	52.417	52.11	52.819	-3.2944					23	13	2	0	0	0	0.026802	1	3561	3561		34.173	5.023	1	67366	+		17235	19123	14064	14086	19204	19204					0.006455236744500326
ICTGRHVL	8	Unmodified	_ICTGRHVL_					0	0	0			REV__ENST00000309865.11_1_16:22482951-22501641:+|nuORF	REV__ENST00000309865.11_1_16:22482951-22501641:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	449.7532653808594	2	449.750005	897.485456	2.6558	0.0011945	4.0733	0.001832	6.7291	0.0030264	449.7519419910019	44.877	1.6463	42.167	41.802	43.448	-2.7097					74	32	4	0	0	0	0.38598	2	2580	2580;2586		90.777	11.326	1	318930	+		17236	24328	14065	14087	19205;19206	19205					0.03261281948061878
ICTLQDGIAK	10	Unmodified	_ICTLQDGIAK_					0	0	0			REV__tr|A0A553SGQ6|A0A553SGQ6_NIACIGMPsynthase[glutamine-hydrolyzing]OS=NialliacirculansOX=1397GN=guaAPE=3SV=1	REV__tr|A0A553SGQ6|A0A553SGQ6_NIACIGMPsynthase[glutamine-hydrolyzing]OS=NialliacirculansOX=1397GN=guaAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	531.28515625	2	531.286617	1060.55868	0.40523	0.00021529	-3.948	-0.0020975	-3.5427	-0.0018822	531.2844670916394	162.4	0.50168	162.4	162.02	162.53	0					35	9	6	0	0	0	0.52439	1	19016	19016		51.193	1.7511	1	1009300	+		17237	29728	14066	14088	19207	19207					0.03082365880004545
ICTVGFVFKN	10	Unmodified	_ICTVGFVFKN_					0	0	0		ENST00000348225.6_1_7:136912667-136912763:-|nuORF	ENST00000348225.6_1_7:136912667-136912763:-|nuORF	ENST00000348225.6_1_7:136912667-136912763:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.2681884765625	2	564.299527	1126.5845	2.4467	0.0013807	-0.1158	-6.5347E-05	2.3309	0.0013153	564.2993479232684	100.1	0.58823	100.1	99.856	100.44	0					24	13	2	0	0	0	0.026679	1	11076	11076		71.877	0	1	845130			17238	10638	14067	14089	19208	19208					0.02627260122289954
ICVLHRVKATT	11	Unmodified	_ICVLHRVKATT_					0	0	0		ENST00000507048.1_1_5:432524-432644:+|nuORF	ENST00000507048.1_1_5:432524-432644:+|nuORF	ENST00000507048.1_1_5:432524-432644:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	413.8954162597656	3	414.244664	1239.71216	0.11742	4.8642E-05	-2.7518	-0.0011399	-2.6344	-0.0010913	414.24345726223504	47.527	1.0395	44.818	44.489	45.529	-2.7097					43	20	3	0	0	0	0.026056	1	2863	2863		9.2118	2.5522	1	66727			17239	12921	14068	14090	19209	19209					0.10189400716330965
ICVLHRVKATT	11	Unmodified	_ICVLHRVKATT_					0	0	0		ENST00000507048.1_1_5:432524-432644:+|nuORF	ENST00000507048.1_1_5:432524-432644:+|nuORF	ENST00000507048.1_1_5:432524-432644:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	414.244664	1239.71216	-0.066267	-2.7451E-05	-2.7928	-0.0011569	-2.8591	-0.0011844	414.2434651744814	48.299	0.82329	45.192	44.938	45.761	-3.1077	0.18691	-3.0992E-05	NaN	9.2118	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45383			17240	12921	14068	14090							0.10189400716330965
ICVPAAELQGG	11	Unmodified	_ICVPAAELQGG_					0	0	0			REV__nc|ENSG00000184640|Q9UHD8-8|SEPTIN9	REV__nc|ENSG00000184640|Q9UHD8-8|SEPTIN9	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.268798828125	2	529.270967	1056.52738	-0.58177	-0.00030791	-2.7482	-0.0014545	-3.3299	-0.0017624	529.2692227346765	112.29	1.557	110.78	110.53	112.08	-1.5111					76	30	3	0	0	0	0.28332	1	10374	10374		69.628	0.8408	1	177540	+		17241	29051	14069	14091	19210	19210					0.0013779284593056218
ICVPAAELQGG	11	Unmodified	_ICVPAAELQGG_					0	0	0			REV__nc|ENSG00000184640|Q9UHD8-8|SEPTIN9	REV__nc|ENSG00000184640|Q9UHD8-8|SEPTIN9	MULTI-MATCH	OvCa9_classI_Rep2	2		2	529.270967	1056.52738	-0.30003	-0.0001588	-2.0073	-0.0010624	-2.3074	-0.0012212	529.2690967520747	111.13	1.9224	110.99	110.68	112.61	-0.13961	0.2006	0.00026329	NaN	69.628	95	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125150	+		17242	29051	14069	14091							0.0013779284593056218
ICVPAAELQGG	11	Unmodified	_ICVPAAELQGG_					0	0	0			REV__nc|ENSG00000184640|Q9UHD8-8|SEPTIN9	REV__nc|ENSG00000184640|Q9UHD8-8|SEPTIN9	MULTI-MATCH	OvCa9_classI_Rep3	3		2	529.270967	1056.52738	1.5589	0.00082508	-4.644	-0.0024579	-3.0851	-0.0016328	529.268159896555	111.87	1.4783	110.77	110.5	111.98	-1.1038	-0.020957	-0.0025277	NaN	69.628	65	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156240	+		17243	29051	14069	14091							0.0013779284593056218
ICVPAAELQGG	11	Unmodified	_ICVPAAELQGG_					0	0	0			REV__nc|ENSG00000184640|Q9UHD8-8|SEPTIN9	REV__nc|ENSG00000184640|Q9UHD8-8|SEPTIN9	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	529.270967	1056.52738	-0.58177	-0.00030791	-2.7482	-0.0014545	-3.3299	-0.0017624	529.2692227346765	112.29	1.557	110.78	110.53	112.08	-1.5111	-0.012247	-0.00052093	NaN	69.628	76	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177540	+		17244	29051	14069	14091							0.0013779284593056218
IDAINEKLTKL	11	Unmodified	_IDAINEKLTKL_					0	0	0		ENST00000540673.1_1_12:64615457-64616017:-|nuORF	ENST00000540673.1_1_12:64615457-64616017:-|nuORF	ENST00000540673.1_1_12:64615457-64616017:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	419.197998046875	3	419.918611	1256.734	-1.9071	-0.00080083	2.5479	0.0010699	0.64077	0.00026907	420.25399427452817	50.507	0.25915	47.366	47.184	47.444	-3.1416					5	4	2	0	0	0	0.026033	1	2913	2913		17.167	0	1	6358.7			17245	13455	14070	14092	19211	19211					0.11590483945883534
IDAKRMTE	8	Unmodified	_IDAKRMTE_					0	0	0			REV__nc|ENSG00000109181|P36537-2|UGT2B10	REV__nc|ENSG00000109181|P36537-2|UGT2B10	MULTI-SECPEP	OvCa9_classI_Rep3	3	481.8065490722656	2	482.250034	962.485516	-1.0409	-0.00050198	1.363	0.00065733	0.32215	0.00015535	482.2512925140002	86.969	0.25198	84.793	84.582	84.834	-2.1768					7	4	2	0	0	0	0.028476	1	5190	5190		38.806	4.6336	1	10236	+		17246	17923	14071	14093	19212	19212					0.002772371574110366
IDAKRMTE	8	Unmodified	_IDAKRMTE_					0	0	0			REV__nc|ENSG00000109181|P36537-2|UGT2B10	REV__nc|ENSG00000109181|P36537-2|UGT2B10	MULTI-MATCH	OvCa9_classI_Rep2	2		2	482.250034	962.485516	-0.72387	-0.00034908	1.2671	0.00061107	0.54325	0.00026198	482.2501658765723	86.233	0.71416	84.743	84.295	85.009	-1.4906	0.050204	0.0005099	NaN	38.806	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10179	+		17247	17923	14071	14093							0.002772371574110366
IDALKKFK	8	Unmodified	_IDALKKFK_					0	0	0			REV__nc|ENSG00000134760|Q02413-2|DSG1	REV__nc|ENSG00000134760|Q02413-2|DSG1	MULTI-MSMS	OvCa9_classI_Rep3	3	481.8065490722656	2	481.805303	961.596052	-0.97153	-0.00046809	0.54152	0.00026091	-0.43001	-0.00020718	481.80540568009116	86.866	1.4807	84.689	84.431	85.911	-2.1768					77	28	4	0	0	0	0.50674	1	5190	5190		76.847	13.54	1	615730	+		17248	19229	14072	14094	19213	19213					0.11371825207936581
IDALRVNNN	9	Unmodified	_IDALRVNNN_					0	0	0		ENST00000489050.5_1_9:138825248-138834097:-|nuORF;ENSG00000130560|ENST00000371756|UBAC1	ENST00000489050.5_1_9:138825248-138834097:-|nuORF	ENST00000489050.5_1_9:138825248-138834097:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.309814453125	2	514.777805	1027.54106	-0.92687	-0.00047713	-1.372	-0.00070627	-2.2989	-0.0011834	514.7770963097316	99.596	0.25751	97.271	97.16	97.417	-2.3253					6	4	2	0	0	0	0.027462	1	8888	8888		31.955	8.9124	1	9964.5			17249	3994	14073	14095	19214	19214					0.028387866693719843
IDAQHLVVIAM	11	Oxidation (M)	_IDAQHLVVIAM(Oxidation (M))_		IDAQHLVVIAM(1)		IDAQHLVVIAM(46)	0	0	1			REV__ENST00000485801.1_1_3:132120486-132120636:+|nuORF	REV__ENST00000485801.1_1_3:132120486-132120636:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	613.3350219726562	2	613.334098	1224.65364	2.6454	0.0016225	-3.0643	-0.0018794	-0.41892	-0.00025693	613.3321347747326	115.75	1.1156	115.75	115.3	116.42	0					76	23	5	0	0	0	0.58572	1	13225	13225		45.972	8.4641	1	5903300	+		17250	26570	14074	14096	19215	19215		593			0.05030299351210488
IDDDDPFNPQ	10	Unmodified	_IDDDDPFNPQ_					0	0	0		ENSG00000141540|ENST00000269346|TTYH2;nc|ENSG00000141540|Q9BSA4-2|TTYH2	ENSG00000141540|ENST00000269346|TTYH2	ENSG00000141540|ENST00000269346|TTYH2	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.8082885742188	2	588.2462	1174.47785	-0.09285	-5.4619E-05	-0.28132	-0.00016548	-0.37417	-0.0002201	588.2450546853997	105.24	0.3987	105.24	105	105.4	0					18	8	3	0	0	0	0.027021	1	11818	11818		21.96	0	1	191320			17251	4924	14075	14097	19216	19216					-0.10241243629184282
IDDKLRKN	8	Unmodified	_IDDKLRKN_					0	0	0			REV__ENST00000482295.1_1_9:136213358-136213517:-|nuORF	REV__ENST00000482295.1_1_9:136213358-136213517:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.2890319824219	2	501.290548	1000.56654	1.3674	0.00068548	-1.5595	-0.00078175	-0.19204	-9.6267E-05	501.2895121117765	137.98	2.3901	136.45	135.78	138.17	-1.5284					99	50	3	0	0	0	0.745	1	13375	13375		29.15	1.2673	1	64432	+		17252	20099	14076	14098	19217	19217					0.06628261191804086
IDDLSIKDL	9	Unmodified	_IDDLSIKDL_					0	0	0			REV__tr|A0A553SMW8|A0A553SMW8_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23185PE=4SV=1	REV__tr|A0A553SMW8|A0A553SMW8_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23185PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	516.286865234375	2	516.284597	1030.55464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.421	1	70.421	69.921	70.921	0								0	0	0	0.11106	1	6752	6752		69.628	3.1983	1		+		17253	30376	14077	14099	19218	19218					0.040585996579466155
IDDLTDNVL	9	Unmodified	_IDDLTDNVL_					0	0	0			REV__ENST00000466696.1_1_3:87302513-87302969:+|nuORF	REV__ENST00000466696.1_1_3:87302513-87302969:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	509.2590637207031	2	509.258579	1016.50261	1.9598	0.00099804	-1.0076	-0.00051311	0.95224	0.00048493	509.2581083596705	78.102	0.99386	78.102	77.757	78.75	0					48	23	4	0	0	0	0.045281	1	7892	7892		122.18	9.7651	1	2049800	+		17254	26189	14078	14100	19219	19219					-0.00498563755820669
IDDPKGGRVNL	11	Unmodified	_IDDPKGGRVNL_					0	0	0			REV__ENSG00000196850|ENST00000354300|PPTC7	REV__ENSG00000196850|ENST00000354300|PPTC7	MULTI-MSMS	OvCa99_classI_Rep5	1	592.3275146484375	2	592.325119	1182.63569	1.2865	0.00076203	3.4467	0.0020415	4.7332	0.0028036	592.3271147576778	145.52	0.94299	145.52	145.13	146.08	0					49	19	4	0	0	0	0.65063	1	17012	17012		40.058	0.80534	1	331790			17255	22869	14079	14101	19220	19220					0.05167300420725951
IDDVINKKSET	11	Unmodified	_IDDVINKKSET_					0	0	0		tr|A0A7D6VR75|A0A7D6VR75_9CLOTS8familyserinepeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23735PE=3SV=1	tr|A0A7D6VR75|A0A7D6VR75_9CLOTS8familyserinepeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23735PE=3SV=1	tr|A0A7D6VR75|A0A7D6VR75_9CLOTS8familyserinepeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23735PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	631.337890625	2	631.33535	1260.65615	1.0422	0.00065797	0.69443	0.00043842	1.7366	0.0010964	631.3358609872256	67.254	1.3749	63.764	63.59	64.965	-3.4902					72	27	4	0	0	0	0.51772	1	4933	4933		35.152	0.97948	1	1166500			17256	34901	14080	14102	19221	19221					0.03624426289843541
IDDYGLFEDL	10	Unmodified	_IDDYGLFEDL_					0	0	0			REV__nc|ENSG00000182087|Q4ZIN3-2|TMEM259	REV__nc|ENSG00000182087|Q4ZIN3-2|TMEM259	MULTI-MSMS	OvCa9_classI_Rep4_	4	600.2728271484375	2	600.276969	1198.53938	-5.9129	-0.0035494	-2.2915	-0.0013755	-8.2044	-0.0049249	600.2754165352742	160.39	2.7294	158.78	158.34	161.07	-1.6101					180	65	4	0	0	0	0.67931	1	15971	15971		32.812	3.6629	1	309270	+		17257	22260	14081	14103	19222	19222					-0.05194311929903961
IDEASPLFG	9	Unmodified	_IDEASPLFG_					0	0	0		ENSG00000260458|ENST00000567955|KCNJ18;ENSG00000184185|ENST00000583088|KCNJ12	ENSG00000260458|ENST00000567955|KCNJ18	ENSG00000260458|ENST00000567955|KCNJ18	MULTI-MSMS	OvCa99_classI_Rep5	1	474.7377014160156	2	474.737283	947.460012	0.91006	0.00043204	1.423	0.00067553	2.333	0.0011076	474.7378040119589	140.14	0.57213	140.14	139.97	140.54	0					22	11	3	0	0	0	0.19716	1	16371	16371		76.847	0	1	109100			17258	9494	14082	14104	19223	19223					-0.015819140933786002
IDEGVRACWW	10	Unmodified	_IDEGVRACWW_					0	0	0			REV__tr|A0A7D6ZRC9|A0A7D6ZRC9_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12235PE=4SV=1	REV__tr|A0A7D6ZRC9|A0A7D6ZRC9_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12235PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	617.3203125	2	617.787315	1233.56008	1.1364	0.00070206	-3.6306	-0.0022429	-2.4942	-0.0015409	617.7846085860522	131.09	0.23589	131.09	130.96	131.2	0					6	4	2	0	0	0	0.026956	1	15225	15225		26.693	4.1133	1	23558	+		17259	32155	14083	14105	19224	19224					-0.04736000031243748
IDEKYRLNV	9	Unmodified	_IDEKYRLNV_					0	0	0		tr|A0A7D6VTB0|A0A7D6VTB0_9CLOTGTP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07240PE=4SV=1	tr|A0A7D6VTB0|A0A7D6VTB0_9CLOTGTP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07240PE=4SV=1	tr|A0A7D6VTB0|A0A7D6VTB0_9CLOTGTP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07240PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	575.29833984375	2	575.316763	1148.61897	-0.86478	-0.00049752	3.0917	0.0017787	2.227	0.0012812	575.3179617875962	97.701	0.24722	96.743	96.612	96.859	-0.95856					6	4	2	0	0	0	0.027402	1	8842	8842		76.774	12.567	1	6078.1			17260	35102	14084	14106	19225	19225					0.05060799534749094
IDELLQLLV	9	Unmodified	_IDELLQLLV_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	OvCa9_classI_Rep2	2	528.319580078125	2	528.320983	1054.62741	-1.2877	-0.00068031	-1.4779	-0.00078078	-2.7655	-0.0014611	528.3201028484496	56.253	2.2315	53.449	52.879	55.11	-2.804					126	44	4	0	0	0	0.59983	1	3977	3977		31.955	0	1	541320	+		17261	22731	14085	14107	19226	19226					0.10228353451361727
IDENQPYII	9	Unmodified	_IDENQPYII_					0	0	0		tr|A0A553ST15|A0A553ST15_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_04070PE=4SV=1	tr|A0A553ST15|A0A553ST15_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_04070PE=4SV=1	tr|A0A553ST15|A0A553ST15_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_04070PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	552.782958984375	2	552.782222	1103.54989	0.0023486	1.2982E-06	-0.10093	-5.579E-05	-0.098578	-5.4492E-05	552.7820322191556	115.98	1.1882	115.87	115.49	116.68	-0.11777					57	23	3	0	0	0	0.21231	1	11064	11064		74.255	1.3758	1	146950			17262	34448	14086	14108	19227	19227					0.0022571551519376953
IDENSPEPN	9	Unmodified	_IDENSPEPN_					0	0	0			REV__tr|A0A553SQJ6|A0A553SQJ6_NIACIDNArepairproteinRadCOS=NialliacirculansOX=1397GN=CEQ21_07660PE=4SV=1	REV__tr|A0A553SQJ6|A0A553SQJ6_NIACIDNArepairproteinRadCOS=NialliacirculansOX=1397GN=CEQ21_07660PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.8326110839844	2	507.722361	1013.43017	2.5874	0.0013137	-1.9188	-0.00097419	0.66862	0.00033947	508.22100455485634	86.696	0.16704	86.696	86.594	86.761	0					5	3	2	0	0	0	0.027185	1	9150	9150		82.241	10.363	1	79221	+		17263	30638	14087	14109	19228	19228					-0.07600897829377118
IDERQVPT	8	Unmodified	_IDERQVPT_					0	0	0		nc|ENSG00000197562|Q96S21-2|RAB40C	nc|ENSG00000197562|Q96S21-2|RAB40C	nc|ENSG00000197562|Q96S21-2|RAB40C	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.2650451660156	2	479.253631	956.49271	0.033251	1.5936E-05	-0.36132	-0.00017316	-0.32806	-0.00015723	479.253440671691	62.048	1.5494	58.59	58.336	59.885	-3.4577					56	31	3	0	0	0	0.028476	1	4349	4349		55.504	9.5523	1	175850			17264	15251	14088	14110	19229	19229					0.012722930294785328
IDESQKKDIL	10	Unmodified	_IDESQKKDIL_					0	0	0		tr|A0A7D6VPI6|A0A7D6VPI6_9CLOTGlycosyltransferasefamily4proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18765PE=4SV=1	tr|A0A7D6VPI6|A0A7D6VPI6_9CLOTGlycosyltransferasefamily4proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18765PE=4SV=1	tr|A0A7D6VPI6|A0A7D6VPI6_9CLOTGlycosyltransferasefamily4proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18765PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	594.8282470703125	2	594.82716	1187.63977	-1.0911	-0.00064901	2.4285	0.0014446	1.3375	0.00079556	594.8287093087835	76.656	1.4596	74.802	74.518	75.977	-1.854					101	27	5	0	0	0	0.55109	1	6351	6351		47.96	1.5027	1	1003200			17265	34772	14089	14111	19230	19230					0.05345345123782863
IDESQKKDIL	10	Unmodified	_IDESQKKDIL_					0	0	0		tr|A0A7D6VPI6|A0A7D6VPI6_9CLOTGlycosyltransferasefamily4proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18765PE=4SV=1	tr|A0A7D6VPI6|A0A7D6VPI6_9CLOTGlycosyltransferasefamily4proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18765PE=4SV=1	tr|A0A7D6VPI6|A0A7D6VPI6_9CLOTGlycosyltransferasefamily4proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18765PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	594.8295288085938	2	594.82716	1187.63977	0.28085	0.00016705	0.84416	0.00050213	1.125	0.00066918	594.827747358638	77.811	1.4821	74.995	74.584	76.067	-2.8165					102	30	5	0	0	0	0.32926	1	6241	6241		77.318	15.21	1	1231600			17266	34772	14089	14111	19231	19231					0.05345345123782863
IDEVIGKDH	9	Unmodified	_IDEVIGKDH_					0	0	0			REV__ENSG00000080503|ENST00000349721|SMARCA2	REV__ENSG00000080503|ENST00000349721|SMARCA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.2864379882812	2	513.266739	1024.51892	-0.60796	-0.00031204	-0.94494	-0.00048501	-1.5529	-0.00079705	513.2658401971371	65.429	0.98831	65.429	64.995	65.984	0					56	24	3	0	0	0	0.027462	1	6046	6046		31.955	8.9124	1	541490	+		17267	17055	14090	14112	19232	19232					0.007645622009476938
IDFGKDIDIN	10	Unmodified	_IDFGKDIDIN_					0	0	0		tr|A0A553ST15|A0A553ST15_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_04070PE=4SV=1	tr|A0A553ST15|A0A553ST15_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_04070PE=4SV=1	tr|A0A553ST15|A0A553ST15_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_04070PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.31689453125	2	575.292953	1148.57135	1.3752	0.00079113	-1.5036	-0.00086503	-0.12846	-7.3902E-05	575.2918227479942	79.391	0.82666	79.391	79.16	79.987	0					42	20	3	0	0	0	0.026606	1	8078	8078		52.937	22.619	1	2290800			17268	34448	14091	14113	19233	19233					0.003011005439020664
IDFGKDIDIN	10	Unmodified	_IDFGKDIDIN_					0	0	0		tr|A0A553ST15|A0A553ST15_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_04070PE=4SV=1	tr|A0A553ST15|A0A553ST15_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_04070PE=4SV=1	tr|A0A553ST15|A0A553ST15_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_04070PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	575.292953	1148.57135	-1.3523	-0.00077795	-8.9818	-0.0051672	-10.334	-0.0059451	575.2871724340578	81.743	1.2497	79.42	79.007	80.257	-2.3226	0.014537	-0.0065504	NaN	67.494	39	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34133			17269	34448	14091	14113							0.003011005439020664
IDFLQNHTE	9	Unmodified	_IDFLQNHTE_					0	0	0		ENSG00000165661|ENST00000358701|QSOX2	ENSG00000165661|ENST00000358701|QSOX2	ENSG00000165661|ENST00000358701|QSOX2	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.822021484375	2	558.769645	1115.52474	0.7238	0.00040444	-4.1366	-0.0023114	-3.4128	-0.001907	558.7670505655979	63.072	0.35552	63.072	62.902	63.257	0					17	8	3	0	0	0	0.027462	1	5645	5645		25.574	0	1	261820			17270	6587	14092	14114	19234	19234					-0.028403392873769917
IDFNKKKVI	9	Unmodified	_IDFNKKKVI_					0	0	0		tr|A0A7D6VNM8|A0A7D6VNM8_9CLOTUDP-N-acetylglucosamine2-epimerase(non-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=wecBPE=3SV=1	tr|A0A7D6VNM8|A0A7D6VNM8_9CLOTUDP-N-acetylglucosamine2-epimerase(non-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=wecBPE=3SV=1	tr|A0A7D6VNM8|A0A7D6VNM8_9CLOTUDP-N-acetylglucosamine2-epimerase(non-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=wecBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.2996826171875	2	552.842416	1103.67028	1.9619	0.0010846	-0.45249	-0.00025016	1.5094	0.00083446	552.8420732674174	90.585	0.23679	90.585	90.462	90.698	0					8	5	2	0	0	0	0.027462	1	9715	9715		18.324	0	1	312280			17271	34717	14093	14115	19235	19235					0.12259168299465273
IDFPAGCE	8	Carbamidomethyl (C)	_IDFPAGC(Carbamidomethyl (C))E_	IDFPAGC(1)E		IDFPAGC(42)E		0	1	0		nc|ENSG00000215183|Q1L6U9|MSMP	nc|ENSG00000215183|Q1L6U9|MSMP	nc|ENSG00000215183|Q1L6U9|MSMP	MULTI-MSMS	OvCa99_classI_Rep5	1	454.6939392089844	2	454.694561	907.374568	1.5727	0.00071512	0.48386	0.00022001	2.0566	0.00093513	454.69465985565694	123.2	0.87817	123.2	122.95	123.83	0					37	18	3	0	0	0	0.7043	1	14237	14237		42.474	7.2737	1	363690			17272	15314	14094	14116	19236	19236	174				-0.0828240255068522
IDFTGHAL	8	Unmodified	_IDFTGHAL_					0	0	0		nc|ENSG00000057608|P50395-2|GDI2;ENSG00000057608|ENST00000380191|GDI2;ENST00000491154.1_1_X:153666748-153668487:+|nuORF;ENSG00000203879|ENST00000447750|GDI1	nc|ENSG00000057608|P50395-2|GDI2	nc|ENSG00000057608|P50395-2|GDI2	MULTI-MSMS	OvCa9_classI_Rep4_	4	437.2278747558594	2	437.226885	872.439217	-0.17909	-7.8301E-05	0.0225	9.8377E-06	-0.15659	-6.8463E-05	437.2267620707008	91.382	1.4219	88.839	88.553	89.975	-2.5425					57	27	3	0	0	0	0.44269	1	7912	7912		83.287	9.3125	1	246300			17273	1237	14095	14117	19237	19237					-0.0021045968237558554
IDFTGHAL	8	Unmodified	_IDFTGHAL_					0	0	0		nc|ENSG00000057608|P50395-2|GDI2;ENSG00000057608|ENST00000380191|GDI2;ENST00000491154.1_1_X:153666748-153668487:+|nuORF;ENSG00000203879|ENST00000447750|GDI1	nc|ENSG00000057608|P50395-2|GDI2	nc|ENSG00000057608|P50395-2|GDI2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	437.226885	872.439217	2.389	0.0010445	-2.2213	-0.00097123	0.16762	7.329E-05	437.2258012987331	90.248	1.4092	88.946	88.532	89.941	-1.302	0.10061	-0.0014328	NaN	83.287	62	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125810			17274	1237	14095	14117							-0.0021045968237558554
IDFTGHAL	8	Unmodified	_IDFTGHAL_					0	0	0		nc|ENSG00000057608|P50395-2|GDI2;ENSG00000057608|ENST00000380191|GDI2;ENST00000491154.1_1_X:153666748-153668487:+|nuORF;ENSG00000203879|ENST00000447750|GDI1	nc|ENSG00000057608|P50395-2|GDI2	nc|ENSG00000057608|P50395-2|GDI2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	437.226885	872.439217	-0.3405	-0.00014888	0.5287	0.00023116	0.1882	8.2284E-05	437.22698632580864	90.831	1.3696	88.751	88.464	89.834	-2.0805	-0.094482	0.000972	NaN	83.287	59	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249620			17275	1237	14095	14117							-0.0021045968237558554
IDGEFNIKDIK	11	Unmodified	_IDGEFNIKDIK_					0	0	0		tr|A0A7D6VPU8|A0A7D6VPU8_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20450PE=4SV=1	tr|A0A7D6VPU8|A0A7D6VPU8_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20450PE=4SV=1	tr|A0A7D6VPU8|A0A7D6VPU8_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20450PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	431.2332458496094	3	431.234599	1290.68197	0.32719	0.00014109	-2.6967	-0.0011629	-2.3696	-0.0010218	431.23348895655243	40.197	2.2301	37.243	36.963	39.193	-2.9541					131	42	5	0	0	0	0.40612	1	1723	1723		60.691	0.5237	1	2708400			17276	34800	14096	14118	19238	19238					0.048253205321543646
IDGEKVFVL	9	Unmodified	_IDGEKVFVL_					0	0	0		tr|A0A553SFM1|A0A553SFM1_NIACICarbamoylphosphatesynthaselargechainOS=NialliacirculansOX=1397GN=carBPE=3SV=1	tr|A0A553SFM1|A0A553SFM1_NIACICarbamoylphosphatesynthaselargechainOS=NialliacirculansOX=1397GN=carBPE=3SV=1	tr|A0A553SFM1|A0A553SFM1_NIACICarbamoylphosphatesynthaselargechainOS=NialliacirculansOX=1397GN=carBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	510.2909240722656	2	510.292225	1018.5699	-0.0091299	-4.6589E-06	-0.62185	-0.00031733	-0.63098	-0.00032199	510.291696493787	78.792	1.3673	77.052	76.459	77.826	-1.7398					78	26	4	0	0	0	0.56889	1	6604	6604		35.618	1.4457	1	283110			17277	33050	14097	14119	19239	19239					0.061355112458159056
IDGIKKQWNAI	11	Unmodified	_IDGIKKQWNAI_					0	0	0			REV__nc|ENSG00000101161|O94906-2|PRPF6	REV__nc|ENSG00000101161|O94906-2|PRPF6	MULTI-MSMS	OvCa99_classI_Rep5	1	429.24505615234375	3	429.24695	1284.71902	-0.34241	-0.00014698	-3.2283	-0.0013857	-3.5707	-0.0015327	429.2455407695402	39.377	0.6496	39.377	39.107	39.756	0					39	14	5	0	0	0	0.59615	1	2306	2306		45.022	12.988	1	870300	+		17278	17476	14098	14120	19240	19240					0.08805036868579919
IDGIKKQWNAI	11	Unmodified	_IDGIKKQWNAI_					0	0	0			REV__nc|ENSG00000101161|O94906-2|PRPF6	REV__nc|ENSG00000101161|O94906-2|PRPF6	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	429.24695	1284.71902	-0.34241	-0.00014698	-3.2283	-0.0013857	-3.5707	-0.0015327	429.2455407695402	39.377	0.6496	39.377	39.107	39.756	0	0	0	NaN	45.022	39	14	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	870300	+		17279	17476	14098	14120							0.08805036868579919
IDGKFVYLV	9	Unmodified	_IDGKFVYLV_					0	0	0			REV__tr|A0A553SJT5|A0A553SJT5_NIACIPolysaccharidebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_17455PE=4SV=1	REV__tr|A0A553SJT5|A0A553SJT5_NIACIPolysaccharidebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_17455PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	527.311279296875	2	527.302593	1052.59063	1.7563	0.00092613	0.42356	0.00022334	2.1799	0.0011495	527.3026095808294	122.31	1.0539	122.31	122.04	123.09	0					35	22	2	0	0	0	0.38529	1	14171	14171		53.351	9.2347	1	410000	+		17280	30043	14099	14121	19241	19241					0.06644101625443
IDGKWKVV	8	Unmodified	_IDGKWKVV_					0	0	0		tr|A0A7D6VSZ1|A0A7D6VSZ1_9CLOTMembrane-associatedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05945PE=4SV=1	tr|A0A7D6VSZ1|A0A7D6VSZ1_9CLOTMembrane-associatedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05945PE=4SV=1	tr|A0A7D6VSZ1|A0A7D6VSZ1_9CLOTMembrane-associatedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05945PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	472.7813415527344	2	472.781828	943.549102	0.017104	8.0866E-06	-4.2064	-0.0019887	-4.1893	-0.0019806	472.7796963983108	60.582	0.84159	60.582	60.314	61.156	0					37	19	3	0	0	0	0.48084	1	5292	5292		79.451	2.6769	1	2798300			17281	35069	14100	14122	19242	19242					0.07506965656796183
IDGNKVTL	8	Unmodified	_IDGNKVTL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	OvCa99_classI_Rep5	1	430.24957275390625	2	430.247818	858.481082	0.074901	3.2226E-05	1.0921	0.00046988	1.167	0.00050211	430.2482248366575	73.459	0.67213	73.459	73.235	73.907	0					35	16	3	0	0	0	0.31378	1	7214	7214		104.75	5.3716	1	1479500			17282	3058	14101	14123	19243	19243					0.04618096006140604
IDGQELGRIL	10	Unmodified	_IDGQELGRIL_					0	0	0			REV__tr|A0A553SL88|A0A553SL88_NIACIMethylglyoxalsynthaseOS=NialliacirculansOX=1397GN=mgsAPE=3SV=1	REV__tr|A0A553SL88|A0A553SL88_NIACIMethylglyoxalsynthaseOS=NialliacirculansOX=1397GN=mgsAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.3174438476562	2	557.316763	1112.61897	-0.6642	-0.00037017	0.46373	0.00025844	-0.20047	-0.00011173	557.3168545209545	108.74	1.7124	107.02	106.13	107.84	-1.7256					57	33	3	0	0	0	0.20836	1	9966	9966		93.143	2.5424	1	131820	+		17283	30200	14102	14124	19244	19244					0.06716799534774509
IDHFNVMIKK	10	Unmodified	_IDHFNVMIKK_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L;SAMD9L|p.V553Gfs*10|1|0.41|ENSG00000177409|chr7:93134314-93134315|-/C|frameshift_variant	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	MULTI-SECPEP	OvCa9_classI_Rep2	2	623.6763305664062	2	622.844633	1243.67471	-1.286	-0.00080097	-0.79326	-0.00049408	-2.0792	-0.001295	623.3442793565561	76.529	0.5199	74.675	74.414	74.934	-1.854					16	9	2	0	0	0	0.027001	1	6329	6329		21.686	1.689	1	15483			17284	7677	14103	14125	19245	19245					0.06262309450698922
IDHFNVMIKK	10	Unmodified	_IDHFNVMIKK_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L;SAMD9L|p.V553Gfs*10|1|0.41|ENSG00000177409|chr7:93134314-93134315|-/C|frameshift_variant	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	MULTI-MATCH	OvCa9_classI_Rep3	3		2	622.844633	1243.67471	-0.050348	-3.1359E-05	1.2772	0.00079547	1.2268	0.00076411	622.8445997145864	77.237	0.4705	74.866	74.61	75.081	-2.3715	0.095206	0.001144	NaN	21.686	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13679			17285	7677	14103	14125							0.06262309450698922
IDHIPKKLLY	10	Unmodified	_IDHIPKKLLY_					0	0	0			REV__tr|A0A553SL84|A0A553SL84_NIACICCA-addingenzymeOS=NialliacirculansOX=1397GN=ccaPE=3SV=1	REV__tr|A0A553SL84|A0A553SL84_NIACICCA-addingenzymeOS=NialliacirculansOX=1397GN=ccaPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.2113342285156	3	413.920174	1238.73869	0.13895	5.7513E-05	-4.1713	-0.0017266	-4.0324	-0.0016691	413.91859491102684	50.525	0.66125	50.525	50.288	50.949	0					34	14	3	0	0	0	0.027089	1	3860	3860		25.126	11.618	1	500290	+		17286	30198	14104	14126	19246	19246					0.1288741287933135
IDHLLHKNV	9	Unmodified	_IDHLLHKNV_					0	0	0		ENST00000460813.5_1_3:113723412-113755878:-|nuORF;ENSG00000163617|ENST00000295878|CCDC191	ENST00000460813.5_1_3:113723412-113755878:-|nuORF	ENST00000460813.5_1_3:113723412-113755878:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.81494140625	2	544.81419	1087.61383	-0.97746	-0.00053253	-0.7736	-0.00042147	-1.7511	-0.000954	544.813741280451	94.793	1.0522	92.325	92.01	93.062	-2.4685					48	20	3	0	0	0	0.21231	1	8322	8322		74.255	11.277	1	278060			17287	6333	14105	14127	19247	19247					0.07352540462784418
IDHLPTPGSL	10	Unmodified	_IDHLPTPGSL_					0	0	0			REV__ENST00000490776.3_1_7:33019118-33020012:+|nuORF	REV__ENST00000490776.3_1_7:33019118-33020012:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	525.2844848632812	2	525.284931	1048.55531	0.26976	0.0001417	-0.89426	-0.00046974	-0.6245	-0.00032804	525.2844511785617	113.7	2.1235	113.58	113.02	115.14	-0.11777					119	42	4	0	0	0	0.48198	1	10860	10860		56.721	5.5284	1	925990	+		17288	26658	14106	14128	19248	19248					0.032974390976505674
IDHLYAAVK	9	Unmodified	_IDHLYAAVK_					0	0	0		tr|A0A7D6VNS5|A0A7D6VNS5_9CLOTPRDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20185PE=4SV=1	tr|A0A7D6VNS5|A0A7D6VNS5_9CLOTPRDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20185PE=4SV=1	tr|A0A7D6VNS5|A0A7D6VNS5_9CLOTPRDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20185PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.288330078125	2	515.290017	1028.56548	-1.8125	-0.00093398	1.4564	0.00075046	-0.35616	-0.00018352	515.2904503591436	126.92	0.94204	125.48	125.19	126.14	-1.4357					32	18	3	0	0	0	0.61208	1	12097	12097		30.504	0	1	25820			17289	34724	14107	14129	19249	19249					0.05234046822897653
IDHLYAAVK	9	Unmodified	_IDHLYAAVK_					0	0	0		tr|A0A7D6VNS5|A0A7D6VNS5_9CLOTPRDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20185PE=4SV=1	tr|A0A7D6VNS5|A0A7D6VNS5_9CLOTPRDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20185PE=4SV=1	tr|A0A7D6VNS5|A0A7D6VNS5_9CLOTPRDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20185PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.290017	1028.56548	0.71038	0.00036605	-0.55486	-0.00028591	0.15552	8.0139E-05	515.2894941319597	125.6	0.54499	125.36	125.11	125.65	-0.2359	-0.1052	-0.00021832	NaN	30.504	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35111			17290	34724	14107	14129							0.05234046822897653
IDHLYAAVK	9	Unmodified	_IDHLYAAVK_					0	0	0		tr|A0A7D6VNS5|A0A7D6VNS5_9CLOTPRDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20185PE=4SV=1	tr|A0A7D6VNS5|A0A7D6VNS5_9CLOTPRDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20185PE=4SV=1	tr|A0A7D6VNS5|A0A7D6VNS5_9CLOTPRDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20185PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	515.290017	1028.56548	1.784	0.0009193	-1.6765	-0.00086386	0.10758	5.5436E-05	515.2890300430065	126.62	0.68274	125.55	125.28	125.97	-1.0715	0.087051	-0.0013742	NaN	30.504	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26955			17291	34724	14107	14129							0.05234046822897653
IDIDQYPIE	9	Unmodified	_IDIDQYPIE_					0	0	0			REV__sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1	REV__sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.762451171875	2	553.274229	1104.53391	-0.64098	-0.00035464	-3.0734	-0.0017005	-3.7144	-0.0020551	553.2703477614765	80.887	0.24573	78.176	78.003	78.249	-2.7106					6	4	2	0	0	0	0.027418	1	6617	6617		71.877	5.4482	1	9186.3	+		17292	29418	14108	14130	19250	19250					-0.014179907217112486
IDIIQVSEAL	10	Unmodified	_IDIIQVSEAL_					0	0	0		tr|A0A7D6VS69|A0A7D6VS69_9CLOTNucleosidekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04970PE=4SV=1	tr|A0A7D6VS69|A0A7D6VS69_9CLOTNucleosidekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04970PE=4SV=1	tr|A0A7D6VS69|A0A7D6VS69_9CLOTNucleosidekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04970PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.8153686523438	2	550.813522	1099.61249	-2.1422	-0.00118	0.87934	0.00048435	-1.2629	-0.00069562	550.813949243727	107.78	1.8325	105.9	105.64	107.47	-1.8785					70	36	4	0	0	0	0.58067	1	9840	9840		44.377	0.26039	1	230570			17293	34992	14109	14131	19251	19251					0.06666861583380523
IDIKGPSL	8	Unmodified	_IDIKGPSL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep4_	4	421.7536315917969	2	421.752736	841.490919	0.2589	0.00010919	-0.2377	-0.00010025	0.021196	8.9393E-06	421.75250983323997	89.848	1.8749	87.273	86.801	88.676	-2.575					68	36	3	0	0	0	0.3457	2	7725	7725;7738		98.629	8.4954	1	216660			17294	3687	14110	14132	19252;19253	19252					0.06383284011531032
IDIKGPSL	8	Unmodified	_IDIKGPSL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MATCH	OvCa9_classI_Rep2	2		2	421.752736	841.490919	1.9113	0.00080608	-1.5653	-0.00066018	0.34595	0.0001459	421.7519466795251	88.857	1.5782	87.489	86.987	88.565	-1.3676	0.14021	-0.00067779	NaN	98.629	68	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122780			17295	3687	14110	14132							0.06383284011531032
IDIKGPSL	8	Unmodified	_IDIKGPSL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MATCH	OvCa9_classI_Rep3	3		2	421.752736	841.490919	0.18689	7.8823E-05	-0.088811	-3.7456E-05	0.098082	4.1366E-05	421.75256315187625	89.415	1.676	87.284	86.944	88.62	-2.1309	-0.064537	0.00056765	NaN	98.629	65	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	252280			17296	3687	14110	14132							0.06383284011531032
IDIKVIPN	8	Unmodified	_IDIKVIPN_					0	0	0		ENSG00000128591|ENST00000325888|FLNC;nc|ENSG00000128591|Q14315-2|FLNC;FLNC|p.I2110Tfs*16|1|0.33|ENSG00000128591|chr7:128853588-128853591|ATCA/-|frameshift_variant	ENSG00000128591|ENST00000325888|FLNC	ENSG00000128591|ENST00000325888|FLNC	MULTI-SECPEP	OvCa9_classI_Rep2	2	456.7974548339844	2	456.28166	910.548768	0.29381	0.00013406	-1.5275	-0.00069696	-1.2337	-0.0005629	456.2817377813253	103.6	0.59244	103.02	102.78	103.37	-0.57639					19	11	3	0	0	0	0.028476	1	9574	9574		63.306	0	1	15958			17297	3890	14111	14133	19254	19254					0.08991545936942202
IDIRNVDFW	9	Unmodified	_IDIRNVDFW_					0	0	0		tr|A0A7D6ZZM8|A0A7D6ZZM8_9CLOTM3familyoligoendopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20960PE=3SV=1	tr|A0A7D6ZZM8|A0A7D6ZZM8_9CLOTM3familyoligoendopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20960PE=3SV=1	tr|A0A7D6ZZM8|A0A7D6ZZM8_9CLOTM3familyoligoendopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20960PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	589.3509521484375	2	589.303655	1176.59276	0.75805	0.00044672	2.2072	0.0013007	2.9652	0.0017474	589.3046308704721	87.338	0.98564	85.907	85.543	86.528	-1.4311					34	19	3	0	0	0	0.027426	1	7651	7651		63.306	0	1	63076			17298	35967	14112	14134	19255	19255					0.01152530363265214
IDIRQPVIL	9	Unmodified	_IDIRQPVIL_					0	0	0			REV__tr|A0A553SR33|A0A553SR33_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00290PE=4SV=1	REV__tr|A0A553SR33|A0A553SR33_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00290PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	534.2929077148438	2	533.834591	1065.65463	2.0472	0.0010929	-2.5227	-0.0013467	-0.47549	-0.00025383	533.833298998654	123.76	0.61982	122.72	122.51	123.13	-1.0377					18	11	2	0	0	0	0.027462	1	9542	9542		21.96	1.9631	1	14085	+		17299	30688	14113	14135	19256	19256					0.12442881782430959
IDIRQPVIL	9	Unmodified	_IDIRQPVIL_					0	0	0			REV__tr|A0A553SR33|A0A553SR33_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00290PE=4SV=1	REV__tr|A0A553SR33|A0A553SR33_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00290PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	533.834591	1065.65463	-1.1414	-0.00060929	1.0026	0.00053522	-0.13876	-7.4075E-05	533.8351021713117	122.7	0.64201	122.48	122.27	122.91	-0.21803	-0.12339	0.0011709	NaN	21.96	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24775	+		17300	30688	14113	14135							0.12442881782430959
IDIRSIGV	8	Unmodified	_IDIRSIGV_					0	0	0		nc|ENSG00000151136|A6QL63-5|ABTB3;nc|ENSG00000151136|A6QL63-3|ABTB3;ENSG00000151136|ENST00000280758|ABTB3	nc|ENSG00000151136|A6QL63-5|ABTB3	nc|ENSG00000151136|A6QL63-5|ABTB3	MULTI-MSMS	OvCa99_classI_Rep5	1	436.7646789550781	2	436.763635	871.512717	0.28076	0.00012262	-0.50695	-0.00022142	-0.22619	-9.8792E-05	436.7632305769932	59.787	0.94015	59.787	59.494	60.434	0					43	23	4	0	0	0	0.48084	1	5186	5186		79.451	5.4763	1	3412500			17301	5535	14114	14136	19257	19257					0.071820887600893
IDIYVVFLK	9	Unmodified	_IDIYVVFLK_					0	0	0		ENST00000548254.1_1_12:49075109-49075993:-|nuORF	ENST00000548254.1_1_12:49075109-49075993:-|nuORF	ENST00000548254.1_1_12:49075109-49075993:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	555.8388061523438	2	555.333893	1108.65323	1.5001	0.00083308	0.29144	0.00016185	1.7916	0.00099492	555.3339725612706	146.69	1.5122	146.69	146.28	147.79	0					70	30	5	0	0	0	0.46377	1	17205	17205		45.952	1.5748	1	320180			17302	13559	14115	14137	19258	19258					0.10325247693640449
IDKDELKDGL	10	Unmodified	_IDKDELKDGL_					0	0	0		TNRC18|p.K2750Rfs*164|1|0.14|ENSG00000182095|chr7:5312642-5312643|-/C|frameshift_variant;ENSG00000182095|ENST00000430969|TNRC18;ENST00000441896.1_1_7:57059615-57063740:+|nuORF	TNRC18|p.K2750Rfs*164|1|0.14|ENSG00000182095|chr7:5312642-5312643|-/C|frameshift_variant	TNRC18|p.K2750Rfs*164|1|0.14|ENSG00000182095|chr7:5312642-5312643|-/C|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	573.3074951171875	2	573.306061	1144.59757	0.75804	0.00043459	-3.5805	-0.0020527	-2.8225	-0.0016181	573.3038155959678	131.82	0.7442	131.82	131.53	132.27	0					30	15	3	0	0	0	0.44431	1	15313	15313		62.107	1.1355	1	112410			17303	7967	14116	14138	19259	19259					0.031053697153765825
IDKDRDVSI	9	Unmodified	_IDKDRDVSI_					0	0	0		tr|A0A553SJJ2|A0A553SJJ2_NIACIHomoserinedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16790PE=3SV=1	tr|A0A553SJJ2|A0A553SJJ2_NIACIHomoserinedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16790PE=3SV=1	tr|A0A553SJJ2|A0A553SJJ2_NIACIHomoserinedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16790PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	530.787353515625	2	530.785296	1059.55604	-0.073297	-3.8905E-05	-0.27967	-0.00014845	-0.35297	-0.00018735	530.7850969297409	69.149	1.5228	69.149	68.523	70.046	0					92	36	4	0	0	0	0.1944	1	6550	6550		77.318	5.4401	1	10606000			17304	33510	14117	14139	19260	19260					0.028642337467317702
IDKEIYEQLL	10	Unmodified	_IDKEIYEQLL_					0	0	0		ENSG00000001084|ENST00000650454|GCLC	ENSG00000001084|ENST00000650454|GCLC	ENSG00000001084|ENST00000650454|GCLC	MULTI-MSMS	OvCa9_classI_Rep2	2	632.3453369140625	2	632.345186	1262.67582	-1.5963	-0.0010094	-0.12213	-7.723E-05	-1.7184	-0.0010866	632.345049771065	99.719	1.3387	98.889	98.716	100.06	-0.83051					67	26	4	0	0	0	0.25842	1	9101	9101		85.862	6.1492	1	211480			17305	803	14118	14140	19261	19261					0.05498802300621719
IDKEIYEQLL	10	Unmodified	_IDKEIYEQLL_					0	0	0		ENSG00000001084|ENST00000650454|GCLC	ENSG00000001084|ENST00000650454|GCLC	ENSG00000001084|ENST00000650454|GCLC	MULTI-MSMS	OvCa9_classI_Rep3	3	632.3477172851562	2	632.345186	1262.67582	-0.43212	-0.00027325	-1.8425	-0.0011651	-2.2747	-0.0014384	632.3439392672452	100.58	1.7995	98.97	98.802	100.6	-1.6053					74	34	3	0	0	0	0.24109	1	6824	6824		88.177	4.5299	1	286850			17306	803	14118	14140	19262	19262					0.05498802300621719
IDKEKKALL	9	Unmodified	_IDKEKKALL_					0	0	0			REV__ENST00000475065.5_1_7:102953018-102963086:-|nuORF	REV__ENST00000475065.5_1_7:102953018-102963086:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.33154296875	2	529.334424	1056.6543	-0.93509	-0.00049498	2.5715	0.0013612	1.6365	0.00086623	529.3354942496067	58.155	0.70005	54.811	54.596	55.297	-3.3449					31	13	3	0	0	0	0.027455	1	3800	3800		51.335	5.3632	1	167600	+		17307	17760	14119	14141	19263	19263					0.12823462062578983
IDKEQLKLQ	9	Unmodified	_IDKEQLKLQ_					0	0	0			REV__nc|ENSG00000165699|Q92574-2|TSC1	REV__nc|ENSG00000165699|Q92574-2|TSC1	MULTI-MSMS	OvCa99_classI_Rep5	1	557.8343505859375	2	557.826963	1113.63937	1.196	0.00066716	1.5395	0.00085876	2.7355	0.0015259	557.8276473095889	132.06	1.6479	132.06	131.34	132.99	0					82	34	4	0	0	0	0.37135	1	15310	15310		54.776	1.6874	1	1556100	+		17308	21110	14120	14142	19264	19264					0.08709970194558991
IDKERLPQQ	9	Unmodified	_IDKERLPQQ_					0	0	0			REV__nc|ENSG00000131504|O60610-2|DIAPH1	REV__nc|ENSG00000131504|O60610-2|DIAPH1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.8046264648438	2	563.814387	1125.61422	1.1661	0.00065744	2.2027	0.0012419	3.3687	0.0018993	563.8152250713763	74.873	0.77159	71.642	71.434	72.205	-3.2308					24	15	3	0	0	0	0.027462	1	5848	5848		19.104	1.7386	1	76971	+		17309	19020	14121	14143	19265	19265					0.056439153920109675
IDKERLPQQ	9	Unmodified	_IDKERLPQQ_					0	0	0			REV__nc|ENSG00000131504|O60610-2|DIAPH1	REV__nc|ENSG00000131504|O60610-2|DIAPH1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	563.814387	1125.61422	-0.050722	-2.8598E-05	3.38	0.0019057	3.3293	0.0018771	563.8160540524802	73.632	0.68407	71.232	71.001	71.685	-2.3999	-0.15551	8.387E-05	NaN	23.523	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57001	+		17310	19020	14121	14143							0.056439153920109675
IDKERLPQQ	9	Unmodified	_IDKERLPQQ_					0	0	0			REV__nc|ENSG00000131504|O60610-2|DIAPH1	REV__nc|ENSG00000131504|O60610-2|DIAPH1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	563.814387	1125.61422	-0.43054	-0.00024274	3.6356	0.0020498	3.2051	0.0018071	563.8163669799516	73.776	0.79462	71.289	70.974	71.769	-2.4873	-0.099106	0.00037203	NaN	23.523	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85193	+		17311	19020	14121	14143							0.056439153920109675
IDKFCLDADV	10	Unmodified	_IDKFCLDADV_					0	0	0		nc|ENSG00000171109|Q8IWA4-3|MFN1;ENSG00000171109|ENST00000471841|MFN1;MFN1|p.K336Ifs*24|1|0.12|ENSG00000171109|chr3:179375250-179375251|-/TTCTAATGAGGAAATTTTTTAACATTGAAAAT|frameshift_variant;nc|ENSG00000171109|Q8IWA4-2|MFN1;ENSG00000116688|ENST00000235329|MFN2	nc|ENSG00000171109|Q8IWA4-3|MFN1;ENSG00000116688|ENST00000235329|MFN2	nc|ENSG00000171109|Q8IWA4-3|MFN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	568.821044921875	2	569.776082	1137.53761	-0.20934	-0.00011928	2.128	0.0012125	1.9187	0.0010932	569.7774901241323	87.277	1.0997	84.65	84.005	85.105	-2.6269					40	21	3	0	0	0	0.02706	1	7401	7401		23.523	0	1	48200			17312	7172;3197	14122	14144	19266	19266					-0.025656442194986084
IDKGLTDES	9	Unmodified	_IDKGLTDES_					0	0	0		nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1;ENST00000532395.5_1_17:72947667-72950470:-|nuORF;nc|ENSG00000167861|Q8IV36-3|HID1	nc|ENSG00000167861|Q8IV36-2|HID1	nc|ENSG00000167861|Q8IV36-2|HID1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	489.29364013671875	2	489.242929	976.471305	-0.30965	-0.0001515	0.56899	0.00027838	0.25934	0.00012688	489.2430807452044	63.191	0.91224	59.716	59.433	60.345	-3.475					31	18	2	0	0	0	0.027426	1	4396	4396		39.253	0	1	96769			17313	6844	14123	14145	19267	19267					-0.01787136789903343
IDKGMWKKL	9	Unmodified	_IDKGMWKKL_					0	0	0		ENSG00000137288|ENST00000607484|UQCC2;ENST00000606961.1_1_6:33665432-33665861:-|nuORF	ENSG00000137288|ENST00000607484|UQCC2	ENSG00000137288|ENST00000607484|UQCC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.2349853515625	2	559.823169	1117.63179	0.056884	3.1845E-05	0.8878	0.00049701	0.94468	0.00052886	559.8236260980243	67.861	0.42995	67.861	67.566	67.996	0					14	10	2	0	0	0	0.027462	1	6336	6336		47.657	0	1	413530			17314	4575	14124	14146	19268	19268					0.07767539393285006
IDKIIAVEL	9	Unmodified	_IDKIIAVEL_					0	0	0			REV__tr|A0A7D6ZJU7|A0A7D6ZJU7_9CLOTRNA-directedDNApolymeraseOS=ClostridiumintestinaleOX=36845GN=HZF06_02040PE=4SV=1	REV__tr|A0A7D6ZJU7|A0A7D6ZJU7_9CLOTRNA-directedDNApolymeraseOS=ClostridiumintestinaleOX=36845GN=HZF06_02040PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	507.3173828125	2	507.3157	1012.61685	2.2646	0.0011489	-0.12078	-6.1273E-05	2.1439	0.0010876	507.3155145863948	108.34	0.64549	108.34	108.07	108.71	0					34	14	4	0	0	0	0.16264	1	12247	12247		82.75	2.2959	1	850960	+		17315	32092	14125	14147	19269	19269					0.11104370796954299
IDKITQLFRVR	11	Unmodified	_IDKITQLFRVR_					0	0	0			REV__ENSG00000114209|ENST00000392750|PDCD10	REV__ENSG00000114209|ENST00000392750|PDCD10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.27825927734375	3	463.617266	1387.82997	-0.43131	-0.00019996	-1.0579	-0.00049046	-1.4892	-0.00069042	463.6167524019435	76.138	0.28523	73.199	73.08	73.365	-2.9389					10	5	2	0	0	0	0.026145	1	6033	6033		12.957	0	1	28745	+		17316	18182	14126	14148	19270	19270					0.1515667657663471
IDKKASVPSV	10	Unmodified	_IDKKASVPSV_					0	0	0			REV__ENST00000407916.2_1_7:55003624-55004065:+|nuORF	REV__ENST00000407916.2_1_7:55003624-55004065:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	522.3092041015625	2	522.308406	1042.60226	1.1225	0.00058629	-1.4353	-0.00074966	-0.31279	-0.00016338	522.3075429307077	30.251	0.69123	27.542	27.31	28.002	-2.7097					32	13	4	0	0	0	0.6349	1	817	817		37.812	3.639	1	77361	+		17317	25457	14127	14149	19271	19271					0.08266298648823067
IDKKSCVRDR	10	Unmodified	_IDKKSCVRDR_					0	0	0			REV__nc|ENSG00000136153|Q8WWI1-4|LMO7	REV__nc|ENSG00000136153|Q8WWI1-4|LMO7	MULTI-MSMS	OvCa9_classI_Rep4_	4	407.22406005859375	3	407.22404	1218.65029	1.1795	0.0004803	-0.8067	-0.00032851	0.37275	0.00015179	407.2235504868341	22.381	1.0975	21.043	20.574	21.672	-1.3386					64	25	3	0	0	0	0.74773	1	295	295		25.126	0.6068	1	99247	+		17318	28872	14128	14150	19272	19272					0.049710492972053544
IDKVDTVMMGK	11	Unmodified	_IDKVDTVMMGK_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;SYNE1|p.A5284Rfs*31|1|0.11|ENSG00000131018|chr6:152323546-152323547|-/C|frameshift_variant;SYNE1|p.T4511Lfs*10|1|0.03|ENSG00000131018|chr6:152331155-152331155|G/-|frameshift_variant;ENST00000471834.1_1_6:152657861-152688565:-|nuORF	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OvCa99_classI_Rep5	1	619.3554077148438	2	618.819966	1235.62538	0.74126	0.0004587	3.5273	0.0021828	4.2686	0.0026415	618.8225193584665	151.29	0.55811	151.29	150.84	151.4	0					14	10	2	0	0	0	0.025445	1	17692	17692		35.178	0	1	35945			17319	4036	14129	14151	19273	19273					0.016992333795997183
IDLEKELEE	9	Unmodified	_IDLEKELEE_					0	0	0			REV__ENST00000517325.5_1_8:23104188-23118109:+|nuORF	REV__ENST00000517325.5_1_8:23104188-23118109:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	559.2883911132812	2	559.284794	1116.55504	1.8335	0.0010255	2.3947	0.0013393	4.2282	0.0023648	559.285935160322	57.961	2.4261	54.834	53.92	56.346	-3.1264					105	62	3	0	0	0	0.66262	1	1802	1802		24.519	0.99649	1	45402	+		17320	20066	14130	14152	19274	19274					0.0014197458713169908
IDLETDNLI	9	Unmodified	_IDLETDNLI_					0	0	0		ENSG00000108846|ENST00000285238|ABCC3;nc|ENSG00000108846|O15438-4|ABCC3;ENST00000504586.1_1_17:48764852-48765787:+|nuORF;ENST00000508929.1_1_17:48764852-48768558:+|nuORF;ENST00000502426.5_1_17:48755439-48768558:+|nuORF	ENSG00000108846|ENST00000285238|ABCC3	ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	OvCa99_classI_Rep5	1	523.2755126953125	2	523.274229	1044.53391	0.58916	0.00030829	1.3907	0.0007277	1.9798	0.001036	523.2746523600678	123.85	0.63268	123.85	123.56	124.19	0					26	13	3	0	0	0	0.13482	1	14290	14290		87.754	0	1	369290			17321	2682	14131	14153	19275	19275					0.013420092782780557
IDLGEGGTEVM	11	Oxidation (M)	_IDLGEGGTEVM(Oxidation (M))_		IDLGEGGTEVM(1)		IDLGEGGTEVM(62)	0	0	1			REV__tr|A0A553SQM0|A0A553SQM0_NIACIPeptidaseP60OS=NialliacirculansOX=1397GN=CEQ21_07940PE=3SV=1	REV__tr|A0A553SQM0|A0A553SQM0_NIACIPeptidaseP60OS=NialliacirculansOX=1397GN=CEQ21_07940PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	568.7644653320312	2	568.760629	1135.5067	1.49	0.00084745	1.5489	0.00088096	3.0389	0.0017284	568.7609646846315	149.31	0.63649	149.31	149.11	149.75	0					25	12	3	0	0	0	0.38665	1	17475	17475		62.107	16.155	1	77393	+		17322	30643	14132	14154	19276	19276		677			-0.055628423244115766
IDLGVYVDGFI	11	Unmodified	_IDLGVYVDGFI_					0	0	0		ENST00000418595.1_1_6:112938557-112938875:-|nuORF	ENST00000418595.1_1_6:112938557-112938875:-|nuORF	ENST00000418595.1_1_6:112938557-112938875:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	404.2197265625	3	404.216657	1209.62814	3.2514	0.0013143	2.6809	0.0010837	5.9324	0.002398	404.2178648039015	90.477	4.4615	90.477	90.186	94.648	0					287	107	5	0	0	0	0.54114	1	9804	9804		50.034	16.112	1	88373000			17323	11642	14133	14155	19277	19277					0.031711481004322195
IDLHVSSII	9	Unmodified	_IDLHVSSII_					0	0	0			REV__tr|A0A7D6VW02|A0A7D6VW02_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07250PE=4SV=1	REV__tr|A0A7D6VW02|A0A7D6VW02_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07250PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	498.7900390625	2	498.78985	995.565146	1.3102	0.00065351	0.9094	0.0004536	2.2196	0.0011071	498.7899513128215	111.86	0.82687	111.86	111.47	112.3	0					28	17	3	0	0	0	0.21395	1	12728	12728		73.975	0	1	296760	+		17324	31739	14134	14156	19278	19278					0.06718627103043673
IDLIAKDKP	9	Unmodified	_IDLIAKDKP_					0	0	0			REV__nc|ENSG00000158856|Q08495-3|DMTN;REV__ENST00000518816.5_1_8:21924386-21926775:+|nuORF	REV__nc|ENSG00000158856|Q08495-3|DMTN	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.2673034667969	2	506.8055	1011.59645	-0.69854	-0.00035402	-0.061459	-3.1148E-05	-0.76	-0.00038517	506.8053544187565	86.157	1.1855	84.667	84.245	85.431	-1.4906					54	22	3	0	0	0	0.027462	1	7545	7545		39.253	0	1	104500	+		17325	20585;27033	14135	14157	19279	19279					0.09111200137135711
IDLIAKDSDP	10	Unmodified	_IDLIAKDSDP_					0	0	0			REV__ENSG00000198286|ENST00000396946|CARD11	REV__ENSG00000198286|ENST00000396946|CARD11	MSMS	OvCa99_classI_Rep5	1	543.7880859375	2	543.787504	1085.56045	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.16	1	113.16	112.66	113.66	0								0	0	0	0.12201	1	12895	12895		60.118	5.3419	1		+		17326	23007	14136	14158	19280	19280					0.021096981696246075
IDLIHKSIQTL	11	Unmodified	_IDLIHKSIQTL_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4|ABCA13	REV__nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-SECPEP	OvCa99_classI_Rep5	1	640.2844848632812	2	640.88227	1279.74999	2.4099	0.0015445	3.2507	0.0020833	5.6606	0.0036278	641.3858000729479	108.38	0.64417	108.38	108.16	108.8	0					30	14	3	0	0	0	0.02538	1	12307	12307		30.318	0	1	263650	+		17327	22143	14137	14159	19281	19281					0.12130190182801925
IDLIKKIMI	9	Unmodified	_IDLIKKIMI_					0	0	0		tr|A0A7D6ZP27|A0A7D6ZP27_9CLOTLipolyticproteinG-D-S-LfamilyOS=ClostridiumintestinaleOX=36845GN=HZF06_18645PE=4SV=1	tr|A0A7D6ZP27|A0A7D6ZP27_9CLOTLipolyticproteinG-D-S-LfamilyOS=ClostridiumintestinaleOX=36845GN=HZF06_18645PE=4SV=1	tr|A0A7D6ZP27|A0A7D6ZP27_9CLOTLipolyticproteinG-D-S-LfamilyOS=ClostridiumintestinaleOX=36845GN=HZF06_18645PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.8287963867188	2	543.851396	1085.68824	1.6242	0.00088335	-2.687	-0.0014613	-1.0628	-0.000578	543.8497773169114	126.82	0.62865	126.82	126.51	127.14	0					30	13	3	0	0	0	0.027462	1	14642	14642		31.955	0	1	292030			17328	35687	14138	14160	19282	19282					0.1488216722996185
IDLKAFLRHIG	11	Unmodified	_IDLKAFLRHIG_					0	0	0			REV__tr|A0A7D7A4U1|A0A7D7A4U1_9CLOTNickelpincercofactorbiosynthesisproteinLarBOS=ClostridiumintestinaleOX=36845GN=larBPE=4SV=1	REV__tr|A0A7D7A4U1|A0A7D7A4U1_9CLOTNickelpincercofactorbiosynthesisproteinLarBOS=ClostridiumintestinaleOX=36845GN=larBPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8800659179688	2	641.885147	1281.75574	-4.6434	-0.0029805	0.6524	0.00041876	-3.991	-0.0025618	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.72491	1	15415	15415		16.717	3.2633	1	543390	+		17329	32617	14139	14161	19283	19283					0.12613333485114708
IDLLAKIKT	9	Unmodified	_IDLLAKIKT_					0	0	0		ENSG00000175619|ENST00000309562|OR4B1	ENSG00000175619|ENST00000309562|OR4B1	ENSG00000175619|ENST00000309562|OR4B1	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.2812194824219	2	507.831517	1013.64848	-0.30424	-0.0001545	-1.3227	-0.0006717	-1.6269	-0.0008262	507.8308641695533	80.226	1.1148	77.886	77.513	78.628	-2.3399					28	21	2	0	0	0	0.027462	1	4459	4459		23.523	9.3856	1	40883			17330	7558	14140	14162	19284	19284					0.14220363550907678
IDLLAKIKT	9	Unmodified	_IDLLAKIKT_					0	0	0		ENSG00000175619|ENST00000309562|OR4B1	ENSG00000175619|ENST00000309562|OR4B1	ENSG00000175619|ENST00000309562|OR4B1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	507.831517	1013.64848	0.025495	1.2947E-05	-1.3707	-0.00069607	-1.3452	-0.00068313	507.83067412839546	79.327	0.92454	77.587	77.302	78.227	-1.7398	-0.1293	-0.00021609	NaN	23.523	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22409			17331	7558	14140	14162							0.14220363550907678
IDLLAKIKT	9	Unmodified	_IDLLAKIKT_					0	0	0		ENSG00000175619|ENST00000309562|OR4B1	ENSG00000175619|ENST00000309562|OR4B1	ENSG00000175619|ENST00000309562|OR4B1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	507.831517	1013.64848	-1.0159	-0.00051589	-0.14232	-7.2276E-05	-1.1582	-0.00058817	507.8314022841839	80.386	0.63478	77.676	77.466	78.101	-2.7106	-0.040555	0.0010315	NaN	23.523	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29714			17332	7558	14140	14162							0.14220363550907678
IDLLIHIS	8	Unmodified	_IDLLIHIS_					0	0	0			REV__tr|A0A7D7A6J5|A0A7D7A6J5_9CLOTDUF1836domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10990PE=4SV=1	REV__tr|A0A7D7A6J5|A0A7D7A6J5_9CLOTDUF1836domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10990PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	462.28106689453125	2	462.28166	922.548768	-0.31533	-0.00014577	1.5811	0.0007309	1.2657	0.00058513	462.2816240398439	114.69	2.0254	114.58	114.16	116.18	-0.11777					96	40	3	0	0	0	0.23117	4	10914	10914;10918;10924;10930		119.56	4.0978	1	274680	+		17333	32659	14141	14163	19285;19286;19287;19288	19285					0.08439545936960258
IDLLIHIS	8	Unmodified	_IDLLIHIS_					0	0	0			REV__tr|A0A7D7A6J5|A0A7D7A6J5_9CLOTDUF1836domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10990PE=4SV=1	REV__tr|A0A7D7A6J5|A0A7D7A6J5_9CLOTDUF1836domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10990PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	462.2813720703125	2	462.28166	922.548768	-0.47671	-0.00022038	-0.3521	-0.00016277	-0.82881	-0.00038314	462.2813772603221	115.55	1.5308	114.51	114.21	115.74	-1.0414					54	30	2	0	0	0	0.30448	4	8585	8585;8603;8610;8617		106.42	3.6419	1	302690	+		17334	32659	14141	14163	19289;19290;19291;19292	19289					0.08439545936960258
IDLLIHIS	8	Unmodified	_IDLLIHIS_					0	0	0			REV__tr|A0A7D7A6J5|A0A7D7A6J5_9CLOTDUF1836domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10990PE=4SV=1	REV__tr|A0A7D7A6J5|A0A7D7A6J5_9CLOTDUF1836domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10990PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.2816467285156	2	462.28166	922.548768	-0.35851	-0.00016573	0.40144	0.00018558	0.042938	1.9849E-05	462.2815442810292	115.81	1.6716	114.41	114.12	115.79	-1.3977					74	32	5	0	0	0	0.14754	3	10802	10778;10802;10815		133.47	4.608	1	352540	+		17335	32659	14141	14163	19293;19294;19295	19294					0.08439545936960258
IDLLIRGPV	9	Unmodified	_IDLLIRGPV_					0	0	0			REV__nc|ENSG00000140750|Q68EM7-2|ARHGAP17	REV__nc|ENSG00000140750|Q68EM7-2|ARHGAP17	MULTI-MSMS	OvCa99_classI_Rep5	1	498.3167419433594	2	498.316035	994.617516	1.9952	0.00099425	-0.17942	-8.9408E-05	1.8158	0.00090484	498.3158548217742	110.73	1.1136	110.73	110.31	111.42	0					54	24	3	0	0	0	0.12365	2	12581	12558;12581		90.777	19.481	1	3326300	+		17336	19699	14142	14164	19296;19297	19297					0.11999210236672297
IDLLIRGPV	9	Unmodified	_IDLLIRGPV_					0	0	0			REV__nc|ENSG00000140750|Q68EM7-2|ARHGAP17	REV__nc|ENSG00000140750|Q68EM7-2|ARHGAP17	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	498.316035	994.617516	1.9952	0.00099425	-0.17942	-8.9408E-05	1.8158	0.00090484	498.3158548217742	110.73	1.1136	110.73	110.31	111.42	0	0	0	NaN	90.777	54	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3326300	+		17337	19699	14142	14164							0.11999210236672297
IDLLLISH	8	Unmodified	_IDLLLISH_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	OvCa9_classI_Rep3	3	462.28094482421875	2	462.28166	922.548768	-0.47671	-0.00022038	-0.3521	-0.00016277	-0.82881	-0.00038314	462.2813772603221	115.55	1.5308	114.51	114.21	115.74	-1.0414					54	30	2	0	0	0	0.35163	1	8597	8597		97.473	3.4663	1	302690			17338	3346	14143	14165	19298	19298					0.08439545936960258
IDLLLISH	8	Unmodified	_IDLLLISH_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.2809753417969	2	462.28166	922.548768	-0.35851	-0.00016573	0.40144	0.00018558	0.042938	1.9849E-05	462.2815442810292	115.81	1.6716	114.41	114.12	115.79	-1.3977					74	32	5	0	0	0	0.36941	1	10790	10790		94.006	11.701	1	352540			17339	3346	14143	14165	19299	19299					0.08439545936960258
IDLLLVDIK	9	Unmodified	_IDLLLVDIK_					0	0	0		ENSG00000105131|ENST00000221730|EPHX3	ENSG00000105131|ENST00000221730|EPHX3	ENSG00000105131|ENST00000221730|EPHX3	MULTI-MSMS	OvCa9_classI_Rep2	2	521.3312377929688	2	521.33135	1040.64815	0.27913	0.00014552	-0.4707	-0.00024539	-0.19158	-9.9874E-05	521.3309489659422	134.75	0.9297	134.52	134.2	135.13	-0.22696					32	18	2	0	0	0	0.42676	1	13357	13357		49.442	0	1	77592			17340	2423	14144	14166	19300	19300					0.12944943831030287
IDLLPGALTR	10	Unmodified	_IDLLPGALTR_					0	0	0		NYNRIN|p.A1061Lfs*9|1|0.04|ENSG00000205978|chr14:24414928-24414929|-/TCTTACAAGAACATTTTCCACTTGGT|frameshift_variant	NYNRIN|p.A1061Lfs*9|1|0.04|ENSG00000205978|chr14:24414928-24414929|-/TCTTACAAGAACATTTTCCACTTGGT|frameshift_variant	NYNRIN|p.A1061Lfs*9|1|0.04|ENSG00000205978|chr14:24414928-24414929|-/TCTTACAAGAACATTTTCCACTTGGT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	534.8251953125	2	534.824224	1067.63389	0.37756	0.00020193	-0.89779	-0.00048016	-0.52023	-0.00027823	534.8236683996221	89.1	1.399	86.969	86.607	88.006	-2.1309					95	27	4	0	0	0	0.52439	1	5474	5474		51.193	1.6567	1	829240			17341	15445	14145	14167	19301	19301					0.10278291402732975
IDLNDGNV	8	Unmodified	_IDLNDGNV_					0	0	0		nc|ENSG00000239474|O60662-2|KLHL41;ENSG00000239474|ENST00000284669|KLHL41	nc|ENSG00000239474|O60662-2|KLHL41	nc|ENSG00000239474|O60662-2|KLHL41	MULTI-MSMS	OvCa9_classI_Rep4_	4	430.2101745605469	2	430.211432	858.408311	1.3602	0.0005852	-2.9687	-0.0012771	-1.6084	-0.00069195	430.210071815607	113.98	1.3755	112.54	112.2	113.57	-1.4461					58	26	3	0	0	0	0.62474	1	10577	10577		58.782	5.4305	1	255360			17342	9328	14146	14168	19302	19302					-0.02655657787272503
IDLRDDPSTI	10	Unmodified	_IDLRDDPSTI_					0	0	0		nc|ENSG00000289694|P60953-1|CDC42;ENSG00000070831|ENST00000656825|CDC42	nc|ENSG00000289694|P60953-1|CDC42	nc|ENSG00000289694|P60953-1|CDC42	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.2716064453125	2	572.79586	1143.57717	1.5393	0.0008817	3.2279	0.001849	4.7672	0.0027306	572.7977134820032	116.93	0.54256	116.93	116.68	117.23	0					17	11	2	0	0	0	0.026782	1	13423	13423		37.812	0	1	275900			17343	1438	14147	14169	19303	19303					0.011121990555693628
IDLSSTSH	8	Unmodified	_IDLSSTSH_					0	0	0		ENSG00000186472|ENST00000333891|PCLO;nc|ENSG00000186472|Q9Y6V0-6|PCLO;nc|ENSG00000186472|Q9Y6V0-3|PCLO	ENSG00000186472|ENST00000333891|PCLO	ENSG00000186472|ENST00000333891|PCLO	MULTI-MSMS	OvCa9_classI_Rep3	3	430.21014404296875	2	430.211432	858.408311	1.3451	0.00057868	-2.9355	-0.0012629	-1.5904	-0.00068421	430.21006545642274	113.54	1.2833	112.47	112.15	113.43	-1.0753					58	24	4	0	0	0	0.7549	1	8348	8348		24.203	2.2429	1	196220			17344	8338	14148	14170	19304	19304					-0.026556577872838716
IDLSSTSH	8	Unmodified	_IDLSSTSH_					0	0	0		ENSG00000186472|ENST00000333891|PCLO;nc|ENSG00000186472|Q9Y6V0-6|PCLO;nc|ENSG00000186472|Q9Y6V0-3|PCLO	ENSG00000186472|ENST00000333891|PCLO	ENSG00000186472|ENST00000333891|PCLO	MULTI-MSMS	OvCa9_classI_Rep4_	4	430.2103576660156	2	430.211432	858.408311	1.3602	0.0005852	-2.9687	-0.0012771	-1.6084	-0.00069195	430.210071815607	113.98	1.3755	112.54	112.2	113.57	-1.4461					58	26	3	0	0	0	0.62934	1	10590	10590		57.811	3.035	1	255360			17345	8338	14148	14170	19305	19305					-0.026556577872838716
IDLTLVKAPHA	11	Unmodified	_IDLTLVKAPHA_					0	0	0			REV__ENSG00000112297|ENST00000633556|CRYBG1	REV__ENSG00000112297|ENST00000633556|CRYBG1	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3512573242188	2	589.350606	1176.68666	-1.1546	-0.00068047	0.46938	0.00027663	-0.68523	-0.00040384	589.3507829555228	88.833	1.6912	86.23	85.832	87.523	-2.6027					106	33	5	0	0	0	0.28332	1	7642	7642		69.628	3.8245	1	1268100	+		17346	18092	14149	14171	19306	19306					0.10538249465571425
IDLVGIVTDK	10	Unmodified	_IDLVGIVTDK_					0	0	0			REV__ENST00000463516.5_1_7:45009010-45014805:-|nuORF	REV__ENST00000463516.5_1_7:45009010-45014805:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.819580078125	2	536.816064	1071.61758	0.21032	0.0001129	3.5293	0.0018946	3.7396	0.0020075	536.8177736754573	67.975	1.5176	64.485	64.136	65.654	-3.4902					80	30	5	0	0	0	0.48198	1	5045	5045		56.721	8.8055	1	1357400	+		17347	19376	14150	14172	19307	19307					0.08463165446005405
IDLVSCKIDN	10	Unmodified	_IDLVSCKIDN_					0	0	0		nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;ENST00000538453.5_1_16:57103718-57116437:+|nuORF;ENST00000545081.5_1_16:57093337-57116437:+|nuORF	nc|ENSG00000140853|Q86WI3-4|NLRC5	nc|ENSG00000140853|Q86WI3-4|NLRC5	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.8344116210938	2	560.289356	1118.56416	2.685	0.0015044	-3.4723	-0.0019455	-0.78728	-0.0004411	560.2870841647878	85.843	0.48903	85.843	85.624	86.113	0					22	11	3	0	0	0	0.026968	1	8994	8994		22.58	11.714	1	572110			17348	4878	14151	14173	19308	19308					0.009620446718372477
IDLVSCKIDN	10	Unmodified	_IDLVSCKIDN_					0	0	0		nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;ENST00000538453.5_1_16:57103718-57116437:+|nuORF;ENST00000545081.5_1_16:57093337-57116437:+|nuORF	nc|ENSG00000140853|Q86WI3-4|NLRC5	nc|ENSG00000140853|Q86WI3-4|NLRC5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	560.289356	1118.56416	1.0794	0.0006048	-5.4529	-0.0030552	-4.3734	-0.0024504	560.2876062585667	86.943	1.3884	85.512	84.701	86.09	-1.4311	-0.20598	-0.0021913	NaN	41.427	37	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19284			17349	4878	14151	14173							0.009620446718372477
IDLVSCKIDN	10	Unmodified	_IDLVSCKIDN_					0	0	0		nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;ENST00000538453.5_1_16:57103718-57116437:+|nuORF;ENST00000545081.5_1_16:57093337-57116437:+|nuORF	nc|ENSG00000140853|Q86WI3-4|NLRC5	nc|ENSG00000140853|Q86WI3-4|NLRC5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	560.289356	1118.56416	-1.0217	-0.00057248	-2.72	-0.001524	-3.7417	-0.0020964	560.2888729194887	87.717	1.2819	85.541	84.784	86.066	-2.1768	-0.17766	0.00087111	NaN	41.427	41	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26019			17350	4878	14151	14173							0.009620446718372477
IDLVSCKIDN	10	Unmodified	_IDLVSCKIDN_					0	0	0		nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;ENST00000538453.5_1_16:57103718-57116437:+|nuORF;ENST00000545081.5_1_16:57093337-57116437:+|nuORF	nc|ENSG00000140853|Q86WI3-4|NLRC5	nc|ENSG00000140853|Q86WI3-4|NLRC5	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	560.289356	1118.56416	-1.1155	-0.00062503	-2.82	-0.00158	-3.9355	-0.002205	560.78993366257	88.58	0.80946	85.977	85.377	86.186	-2.6027	0.25889	0.00075902	NaN	41.427	18	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19602			17351	4878	14151	14173							0.009620446718372477
IDMKGYKYKI	10	Unmodified	_IDMKGYKYKI_					0	0	0			REV__tr|A0A7D6W1X6|A0A7D6W1X6_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04360PE=4SV=1	REV__tr|A0A7D6W1X6|A0A7D6W1X6_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04360PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	420.23431396484375	3	420.233653	1257.67913	1.4258	0.00059916	1.3764	0.00057842	2.8022	0.0011776	420.23426080527724	91.222	3.0164	89.987	89.439	92.456	-1.2355					163	57	5	0	0	0	0.62712	1	8079	8079		38.754	0.94209	1	1547900	+		17352	31891	14152	14174	19309	19309					0.06059773873630547
IDMLLLIMS	9	Oxidation (M)	_IDM(Oxidation (M))LLLIMS_		IDM(1)LLLIMS		IDM(63)LLLIM(-63)S	0	0	1			REV__tr|A0A553SG35|A0A553SG35_NIACISporulationproteinSpoIISAOS=NialliacirculansOX=1397GN=CEQ21_10025PE=4SV=1	REV__tr|A0A553SG35|A0A553SG35_NIACISporulationproteinSpoIISAOS=NialliacirculansOX=1397GN=CEQ21_10025PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	532.7938232421875	2	532.790146	1063.56574	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.29	1	128.29	127.79	128.79	0								0	0	0	0.13464	1	14863	14863		66.429	10.925	2		+		17353	29655	14153	14175	19310	19310		651			0.03649962436224996
IDMVTTLIAL	10	Unmodified	_IDMVTTLIAL_					0	0	0		tr|A0A7D6VS35|A0A7D6VS35_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03420PE=4SV=1	tr|A0A7D6VS35|A0A7D6VS35_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03420PE=4SV=1	tr|A0A7D6VS35|A0A7D6VS35_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03420PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.3179931640625	2	545.314843	1088.61513	-0.51373	-0.00028014	3.9729	0.0021665	3.4592	0.0018863	545.3169196404446	142.63	4.7541	141.19	139.73	144.49	-1.4427					172	91	2	0	0	0	0.71192	1	13897	13897		29.15	4.6304	1	155190			17354	34982	14154	14176	19311	19311					0.07436993716692086
IDNEALYDICS	11	Unmodified	_IDNEALYDICS_					0	0	0		ENSG00000261456|ENST00000568584|TUBB8;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000478631.6_2_1:53460811-53461279:+|nuORF	ENSG00000261456|ENST00000568584|TUBB8;ENST00000478631.6_2_1:53460811-53461279:+|nuORF	ENSG00000261456|ENST00000568584|TUBB8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	419.197998046875	3	419.188549	1254.54382	-1.3793	-0.00057817	0.37473	0.00015708	-1.0045	-0.00042109	419.18852359714623	50.973	0.56245	47.8	47.36	47.922	-3.1734					13	10	2	0	0	0	0.025668	1	2913	2913		28.577	0	1	11326			17355	9502;12495	14155	14177	19312	19312					-0.07327170778648906
IDNGVIDIN	9	Unmodified	_IDNGVIDIN_					0	0	0			REV__tr|A0A7D6W2H2|A0A7D6W2H2_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06065PE=3SV=1	REV__tr|A0A7D6W2H2|A0A7D6W2H2_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06065PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	486.75439453125	2	486.753464	971.492375	1.1814	0.00057503	0.79399	0.00038648	1.9754	0.00096151	486.75382358647045	119.36	0.42374	119.36	119.1	119.52	0					16	9	2	0	0	0	0.37182	1	13696	13696		54.722	1.3709	1	140280	+		17356	31899	14156	14178	19313	19313					0.00548873309605824
IDNGVIDIN	9	Unmodified	_IDNGVIDIN_					0	0	0			REV__tr|A0A7D6W2H2|A0A7D6W2H2_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06065PE=3SV=1	REV__tr|A0A7D6W2H2|A0A7D6W2H2_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06065PE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	486.753464	971.492375	1.1814	0.00057503	0.79399	0.00038648	1.9754	0.00096151	486.75382358647045	119.36	0.42374	119.36	119.1	119.52	0	0.10877	-0.00056179	NaN	54.722	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140280	+		17357	31899	14156	14178							0.00548873309605824
IDNGVIDIN	9	Unmodified	_IDNGVIDIN_					0	0	0			REV__tr|A0A7D6W2H2|A0A7D6W2H2_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06065PE=3SV=1	REV__tr|A0A7D6W2H2|A0A7D6W2H2_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06065PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	486.753464	971.492375	-0.9095	-0.0004427	5.9337	0.0028883	5.0242	0.0024456	486.7593702704483	120.49	0.47017	119.15	118.93	119.4	-1.3444	-0.10877	0.0044418	NaN	54.722	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17887	+		17358	31899	14156	14178							0.00548873309605824
IDNIIKLV	8	Unmodified	_IDNIIKLV_					0	0	0		tr|A0A7D6ZTM7|A0A7D6ZTM7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20840PE=4SV=1	tr|A0A7D6ZTM7|A0A7D6ZTM7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20840PE=4SV=1	tr|A0A7D6ZTM7|A0A7D6ZTM7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20840PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	464.2856750488281	2	464.29731	926.580068	-0.79061	-0.00036708	2.3553	0.0010936	1.5647	0.00072648	464.2995430178127	95.497	0.44672	93.601	93.465	93.911	-1.8956					18	8	3	0	0	0	0.028476	1	6220	6220		49.442	7.0454	1	62375			17359	35755	14157	14179	19314	19314					0.11384118971045609
IDNIIKLV	8	Unmodified	_IDNIIKLV_					0	0	0		tr|A0A7D6ZTM7|A0A7D6ZTM7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20840PE=4SV=1	tr|A0A7D6ZTM7|A0A7D6ZTM7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20840PE=4SV=1	tr|A0A7D6ZTM7|A0A7D6ZTM7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20840PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	464.2856750488281	2	464.29731	926.580068	-0.69106	-0.00032086	-0.49999	-0.00023214	-1.1911	-0.000553	464.2968723449782	95.246	0.74871	93.35	92.964	93.713	-1.8956					24	14	3	0	0	0	0.028476	1	6220	6220		49.442	7.0454	1	229650			17360	35755	14157	14179	19315	19315					0.11384118971045609
IDNIKSSLLQ	10	Unmodified	_IDNIKSSLLQ_					0	0	0		tr|A0A7D6VPQ1|A0A7D6VPQ1_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23830PE=3SV=1	tr|A0A7D6VPQ1|A0A7D6VPQ1_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23830PE=3SV=1	tr|A0A7D6VPQ1|A0A7D6VPQ1_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23830PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.799560546875	2	565.824421	1129.63429	1.8599	0.0010524	0.65412	0.00037012	2.5141	0.0014225	565.8244432915318	118.94	0.61517	118.94	118.44	119.05	0					16	12	2	0	0	0	0.026895	1	13584	13584		67.494	0	1	45978			17361	34788	14158	14180	19316	19316					0.0746566633195016
IDNLAQLCVLD	11	Unmodified	_IDNLAQLCVLD_					0	0	0		LRRC43|p.S273N|1|0.36|ENSG00000158113|chr12:122190285-122190285|G/A|missense_variant	LRRC43|p.S273N|1|0.36|ENSG00000158113|chr12:122190285-122190285|G/A|missense_variant	LRRC43|p.S273N|1|0.36|ENSG00000158113|chr12:122190285-122190285|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	608.3674926757812	2	608.815738	1215.61692	2.0603	0.0012543	0.73432	0.00044706	2.7946	0.0017014	608.81591451466	115.39	0.88612	115.39	115.12	116	0					38	18	3	0	0	0	0.025466	1	13229	13229		47.96	0	1	133870			17362	14804	14159	14181	19317	19317					0.01774002734646274
IDNLLGLGPN	10	Unmodified	_IDNLLGLGPN_					0	0	0			REV__TBC1D17|p.W499Cfs*60|1|0.28|ENSG00000104946|chr19:49887527-49887527|G/-|frameshift_variant	REV__TBC1D17|p.W499Cfs*60|1|0.28|ENSG00000104946|chr19:49887527-49887527|G/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	513.2889404296875	2	513.284931	1024.55531	3.0686	0.0015751	2.5567	0.0013123	5.6253	0.0028874	513.2861142691663	88.015	1.3753	88.015	87.628	89.004	0					113	32	6	0	0	0	0.47142	1	9318	9318		58.23	5.2932	1	11224000	+		17363	17694	14160	14182	19318	19318					0.04401439097682669
IDNLVKEDV	9	Unmodified	_IDNLVKEDV_					0	0	0			REV__ENST00000479014.1_1_7:87005212-87011518:+|nuORF	REV__ENST00000479014.1_1_7:87005212-87011518:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.830322265625	2	522.782222	1043.54989	0.31399	0.00016415	2.2007	0.0011505	2.5147	0.0013146	522.783337466005	106.25	0.20801	104.98	104.9	105.11	-1.267					5	3	2	0	0	0	0.027462	1	7494	7494		19.104	4.2386	1	9899.3	+		17364	16402	14161	14183	19319	19319					0.02985715515183074
IDNVRIIV	8	Unmodified	_IDNVRIIV_					0	0	0			REV__tr|A0A7D6ZV37|A0A7D6ZV37_9CLOTHAMPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12705PE=3SV=1	REV__tr|A0A7D6ZV37|A0A7D6ZV37_9CLOTHAMPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12705PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	471.29327392578125	2	471.292559	940.570566	-0.27751	-0.00013079	0.10562	4.9779E-05	-0.17189	-8.101E-05	471.2925260681946	81.937	1.3959	79.64	79.284	80.68	-2.2963					82	27	4	0	0	0	0.36941	1	4586	4586		94.006	1.8158	1	1242100	+		17365	32237	14162	14184	19320	19320					0.09790350685534577
IDPFAVGVPSP	11	Unmodified	_IDPFAVGVPSP_					0	0	0			REV__ENST00000491215.1_1_6:32163216-32164008:-|nuORF	REV__ENST00000491215.1_1_6:32163216-32164008:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	550.3272094726562	2	549.795132	1097.57571	-0.16878	-9.2793E-05	3.277	0.0018017	3.1082	0.0017089	549.7964531111412	86.177	1.5749	84.687	83.752	85.327	-1.4907					75	30	4	0	0	0	0.025453	1	7419	7419		44.377	16.495	1	100240	+		17366	26669	14163	14185	19321	19321					0.030826097574845335
IDPGLITVSR	10	Unmodified	_IDPGLITVSR_					0	0	0			REV__nc|ENSG00000170959|M0R2J8|DCDC1	REV__nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2797241210938	2	535.813856	1069.61316	0.049823	2.6696E-05	3.7706	0.0020203	3.8204	0.002047	535.8157418694822	73.579	0.50918	73.579	73.359	73.868	0					28	12	3	0	0	0	0.026782	1	7243	7243		37.812	8.662	1	1051000	+		17367	21583	14164	14186	19322	19322					0.08113701023080466
IDPHLLLSV	9	Unmodified	_IDPHLLLSV_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.28521728515625	2	503.800217	1005.58588	-0.23361	-0.00011769	2.9497	0.0014861	2.7161	0.0013684	503.8016700772505	51.399	1.0494	51.399	51.078	52.127	0					57	24	4	0	0	0	0.027462	1	3954	3954		35.618	7.364	1	2392700			17368	3504	14165	14187	19323	19323					0.08331217482714237
IDPKIEKVLEV	11	Unmodified	_IDPKIEKVLEV_					0	0	0			REV__tr|A0A7D7A2E7|A0A7D7A2E7_9CLOTSporulationpeptidaseYabGOS=ClostridiumintestinaleOX=36845GN=yabGPE=4SV=1	REV__tr|A0A7D7A2E7|A0A7D7A2E7_9CLOTSporulationpeptidaseYabGOS=ClostridiumintestinaleOX=36845GN=yabGPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8817749023438	2	641.884478	1281.7544	-4.6434	-0.0029805	1.6942	0.0010875	-2.9492	-0.0018931	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.69099	1	15622	15622		32.751	2.2469	1	543390	+		17369	32535	14166	14188	19324	19324					0.12479654605704127
IDPKIEKVLEV	11	Unmodified	_IDPKIEKVLEV_					0	0	0			REV__tr|A0A7D7A2E7|A0A7D7A2E7_9CLOTSporulationpeptidaseYabGOS=ClostridiumintestinaleOX=36845GN=yabGPE=4SV=1	REV__tr|A0A7D7A2E7|A0A7D7A2E7_9CLOTSporulationpeptidaseYabGOS=ClostridiumintestinaleOX=36845GN=yabGPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8829345703125	2	641.884478	1281.7544	-2.5182	-0.0016164	-0.91689	-0.00058854	-3.4351	-0.0022049	641.8839546837315	150.47	2.9704	149.03	147.78	150.75	-1.4344					235	64	4	0	0	0	0.70761	1	14898	14898		27.047	1.4733	1	344900	+		17370	32535	14166	14188	19325	19325					0.12479654605704127
IDPKIVEVSKK	11	Unmodified	_IDPKIVEVSKK_					0	0	0		tr|A0A553SL10|A0A553SL10_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_19765PE=4SV=1	tr|A0A553SL10|A0A553SL10_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_19765PE=4SV=1	tr|A0A553SL10|A0A553SL10_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_19765PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	628.382080078125	2	628.384645	1254.75474	-1.7019	-0.0010694	-1.8744	-0.0011778	-3.5763	-0.0022473	628.3832559511075	147.74	1.901	146.3	145.18	147.08	-1.435					72	37	2	0	0	0	0.72324	1	14597	14597		21.686	1.689	1	277210			17371	33673	14167	14189	19326	19326					0.1375507432555878
IDPKRAKAL	9	Unmodified	_IDPKRAKAL_					0	0	0		nc|ENSG00000152795|O14979-3|HNRNPDL;HNRNPDL|p.K289Nfs*3|1|0.69|ENSG00000152795|chr4:82427472-82427472|T/-|frameshift_variant;nc|ENSG00000152795|O14979-2|HNRNPDL;ENSG00000152795|ENST00000295470|HNRNPDL	nc|ENSG00000152795|O14979-3|HNRNPDL	nc|ENSG00000152795|O14979-3|HNRNPDL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.7945861816406	2	506.319109	1010.62366	-1.0203	-0.0005166	-0.08491	-4.2991E-05	-1.1052	-0.00055959	506.3189828451818	52.978	0.54613	49.77	49.602	50.149	-3.208					14	10	2	0	0	0	0.027462	1	3229	3229		44.117	9.9443	1	20105			17372	5646	14168	14190	19327	19327					0.11877728468175519
IDPLDVGIVL	10	Unmodified	_IDPLDVGIVL_					0	0	0			REV__tr|A0A7D6VR73|A0A7D6VR73_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04420PE=3SV=1	REV__tr|A0A7D6VR73|A0A7D6VR73_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04420PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.7660522460938	2	527.313158	1052.61176	2.5403	0.0013395	0.16433	8.6654E-05	2.7046	0.0014262	527.3133170722817	90.308	0.48425	90.308	90.02	90.504	0					17	11	2	0	0	0	0.026752	1	9667	9667		35.618	10.044	1	1982500	+		17373	31393	14169	14191	19328	19328					0.08756066934324735
IDPLVRGLL	9	Unmodified	_IDPLVRGLL_					0	0	0		nc|ENSG00000167419|P22079-2|LPO;ENSG00000167419|ENST00000262290|LPO	nc|ENSG00000167419|P22079-2|LPO	nc|ENSG00000167419|P22079-2|LPO	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3152160644531	2	498.316035	994.617516	-0.044391	-2.2121E-05	-0.21861	-0.00010894	-0.263	-0.00013106	498.3157300992715	110.05	1.7303	109.88	109.41	111.14	-0.17236					105	34	7	0	0	0	0.40667	1	10377	10377		51.335	1.8939	1	1087000			17374	6789	14170	14192	19329	19329					0.11999210236660929
IDQMKCAQLL	10	Unmodified	_IDQMKCAQLL_					0	0	0			REV__ENSG00000072501|ENST00000322213|SMC1A	REV__ENSG00000072501|ENST00000322213|SMC1A	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.846923828125	2	581.801577	1161.5886	1.4544	0.00084614	-4.3294	-0.0025188	-2.875	-0.0016727	581.7984901371206	117.25	0.69787	117.25	116.91	117.6	0					22	14	2	0	0	0	0.026659	1	13429	13429		37.812	3.639	1	180660	+		17375	16916	14171	14193	19330	19330					0.014269815537090835
IDQNEPEIGG	10	Unmodified	_IDQNEPEIGG_					0	0	0			REV__tr|A0A7D7A0H3|A0A7D7A0H3_9CLOTGTPaseDerOS=ClostridiumintestinaleOX=36845GN=derPE=3SV=1	REV__tr|A0A7D7A0H3|A0A7D7A0H3_9CLOTGTPaseDerOS=ClostridiumintestinaleOX=36845GN=derPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.2499389648438	2	536.251286	1070.48802	-1.5791	-0.00084681	-0.026446	-1.4182E-05	-1.6056	-0.00086099	536.2511641448887	120.77	1.4863	119.43	119.13	120.62	-1.3479					72	28	3	0	0	0	0.36605	1	11412	11412		72.879	1.0018	1	361250	+		17376	32447	14172	14194	19331	19331					-0.04440635903938528
IDQNFKMPQ	9	Unmodified	_IDQNFKMPQ_					0	0	0		ENSG00000133665|ENST00000256039|DYDC2	ENSG00000133665|ENST00000256039|DYDC2	ENSG00000133665|ENST00000256039|DYDC2	MULTI-SECPEP	OvCa9_classI_Rep3	3	560.8037719726562	2	560.776416	1119.53828	0.26485	0.00014852	2.3992	0.0013454	2.6641	0.001494	560.7787885575292	129.51	0.29686	128.4	128.29	128.59	-1.1121					6	5	2	0	0	0	0.027462	1	10240	10240		49.442	18.938	1	7151.9			17377	4231	14173	14195	19332	19332					-0.01670804779791979
IDQNQRVFM	9	Oxidation (M)	_IDQNQRVFM(Oxidation (M))_		IDQNQRVFM(1)		IDQNQRVFM(61)	0	0	1			REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	MULTI-SECPEP	OvCa9_classI_Rep3	3	583.8168334960938	2	583.784773	1165.55499	-2.0657	-0.0012059	-3.7158	-0.0021692	-5.7815	-0.0033751	583.7833900995463	82.056	0.505	79.76	79.584	80.089	-2.2963					12	9	2	0	0	0	0.027279	1	4590	4590		60.972	10.947	1	16791	+		17378	17076	14174	14196	19333	19333		401			-0.02116303893831173
IDQSARPPS	9	Unmodified	_IDQSARPPS_					0	0	0			REV__ENSG00000197136|ENST00000355703|PCNX3	REV__ENSG00000197136|ENST00000355703|PCNX3	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.7524108886719	2	485.751256	969.487959	-1.0518	-0.00051093	0.83873	0.00040742	-0.2131	-0.00010351	485.75153925136453	44.323	1.3818	41.284	41.056	42.438	-3.0385					64	26	4	0	0	0	0.56889	1	2207	2207		35.618	0	1	669360	+		17379	22895	14175	14197	19334	19334					0.0019940888671499124
IDRARKVN	8	Unmodified	_IDRARKVN_					0	0	0			REV__ENSG00000135114|ENST00000257570|OASL	REV__ENSG00000135114|ENST00000257570|OASL	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.2898864746094	2	486.290882	970.567212	1.0523	0.00051172	-4.3404	-0.0021107	-3.2881	-0.001599	486.2884483834136	96.773	2.621	94.348	93.609	96.23	-2.4256					142	51	5	0	0	0	0.65062	1	8607	8607		53.351	0	1	3468200	+		17380	19261	14176	14198	19335	19335					0.08075100631515397
IDRCDNENL	9	Unmodified	_IDRCDNENL_					0	0	0			REV__tr|A0A7D6VRE6|A0A7D6VRE6_9CLOTsite-specificDNA-methyltransferase(adenine-specific)OS=ClostridiumintestinaleOX=36845GN=HZF06_06585PE=4SV=1	REV__tr|A0A7D6VRE6|A0A7D6VRE6_9CLOTsite-specificDNA-methyltransferase(adenine-specific)OS=ClostridiumintestinaleOX=36845GN=HZF06_06585PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.3150634765625	2	546.242938	1090.47132	2.1762	0.0011887	1.0894	0.00059506	3.2656	0.0017838	546.2433871975642	84.151	0.38181	84.151	83.921	84.303	0					18	8	3	0	0	0	0.02744	1	8750	8750		44.377	5.1244	1	294240	+		17381	31409	14177	14199	19336	19336					-0.07029460061539794
IDREQHTSN	9	Unmodified	_IDREQHTSN_					0	0	0			REV__GPBP1|p.N435Mfs*3|1|0.33|ENSG00000062194|chr5:57262630-57262630|A/-|frameshift_variant	REV__GPBP1|p.N435Mfs*3|1|0.33|ENSG00000062194|chr5:57262630-57262630|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	550.2578125	2	550.259976	1098.5054	0.20025	0.00011019	-2.9102	-0.0016014	-2.7099	-0.0014912	550.2580670896492	162.4	0.39961	162.4	162.13	162.53	0					19	7	4	0	0	0	0.42576	1	19040	19040		49.536	10.283	1	301140	+		17382	16750	14178	14200	19337	19337					-0.039912955782710924
IDRFIPITK	9	Unmodified	_IDRFIPITK_					0	0	0		ENST00000585563.5_1_19:38798235-38806107:-|nuORF;nc|ENSG00000167645|Q5BJH7-2|YIF1B;nc|ENSG00000167645|Q5BJH7-4|YIF1B;nc|ENSG00000167645|Q5BJH7-5|YIF1B;nc|ENSG00000167645|Q5BJH7-6|YIF1B;nc|ENSG00000167645|Q5BJH7-3|YIF1B;ENSG00000167645|ENST00000339413|YIF1B;ENST00000589644.1_1_19:38799650-38799980:-|nuORF	ENST00000585563.5_1_19:38798235-38806107:-|nuORF	ENST00000585563.5_1_19:38798235-38806107:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	551.8342895507812	2	551.834591	1101.65463	-1.4468	-0.00079841	1.2828	0.00070792	-0.16398	-9.0489E-05	551.8352363148457	101.35	1.3104	99.741	99.446	100.76	-1.6053					67	24	4	0	0	0	0.2422	1	6931	6931		69.628	3.1983	1	510450			17383	6822	14179	14201	19338	19338					0.10786881782405544
IDRIRIVF	8	Unmodified	_IDRIRIVF_					0	0	0			REV__ENST00000425095.1_1_10:35986317-35986536:+|nuORF	REV__ENST00000425095.1_1_10:35986317-35986536:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2833251953125	2	516.321651	1030.62875	1.451	0.00074921	1.2598	0.00065047	2.7109	0.0013997	516.3220680603604	79.547	0.50068	79.547	79.24	79.741	0					16	12	2	0	0	0	0.028476	1	8138	8138		16.473	0	1	326670	+		17384	25651	14180	14202	19339	19339					0.1146603233080441
IDRNTVRVI	9	Unmodified	_IDRNTVRVI_					0	0	0			REV__ENSG00000122406|ENST00000370321|RPL5	REV__ENSG00000122406|ENST00000370321|RPL5	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.326171875	2	543.324922	1084.63529	-1.5725	-0.00085437	0.33479	0.0001819	-1.2377	-0.00067247	543.3250459838429	73.26	1.2951	69.864	69.446	70.741	-3.3961					64	26	3	0	0	0	0.38969	1	5669	5669		52.937	1.4089	1	401670	+		17385	18593	14181	14203	19340	19340					0.09635925491511443
IDRRRQPPL	9	Unmodified	_IDRRRQPPL_					0	0	0			REV__ENSG00000124571|ENST00000265351|XPO5	REV__ENSG00000124571|ENST00000265351|XPO5	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8428955078125	2	575.843813	1149.67307	-2.1491	-0.0012375	0.86974	0.00050083	-1.2794	-0.00073671	575.8441928035448	141.47	4.0925	141.24	139.21	143.3	-0.22696					166	82	3	0	0	0	0.7044	1	14195	14195		16.473	0.83134	1	100260	+		17386	18694	14182	14204	19341	19341					0.10422436476983421
IDRRVRGP	8	Unmodified	_IDRRVRGP_					0	0	0			REV__ENST00000434206.1_1_3:43020805-43095327:+|nuORF	REV__ENST00000434206.1_1_3:43020805-43095327:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.2666320800781	2	484.79105	967.567546	-1.0759	-0.00052158	3.4158	0.001656	2.3399	0.0011344	484.7926292516316	71.844	0.97043	68.388	68.174	69.144	-3.4563					42	19	3	0	0	0	0.028476	1	5541	5541		53.351	32.405	1	265360	+		17387	19925	14183	14205	19342	19342					0.08246520351383424
IDRSDLNRQG	10	Unmodified	_IDRSDLNRQG_					0	0	0		nc|ENSG00000133107|Q9UBN4-6|TRPC4;nc|ENSG00000133107|Q9UBN4-4|TRPC4;nc|ENSG00000133107|Q9UBN4-3|TRPC4;nc|ENSG00000133107|Q9UBN4-2|TRPC4;TRPC4|p.Q905Rfs*9|1|0.09|ENSG00000133107|chr13:37637123-37637124|-/GTTC|frameshift_variant;ENSG00000133107|ENST00000379705|TRPC4;nc|ENSG00000133107|Q9UBN4-5|TRPC4	nc|ENSG00000133107|Q9UBN4-6|TRPC4	nc|ENSG00000133107|Q9UBN4-6|TRPC4	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.3278198242188	2	587.302175	1172.5898	-0.98189	-0.00057666	-1.6293	-0.00095691	-2.6112	-0.0015336	587.3011655170533	69.848	0.45464	69.848	69.591	70.046	0					16	10	2	0	0	0	0.027145	1	6665	6665		2.028	0	1	307400			17388	4200	14184	14206	19343	19343					0.010406552384665702
IDRTGLSRL	9	Unmodified	_IDRTGLSRL_					0	0	0			REV__ENST00000419769.6_1_10:127430814-127452038:+|nuORF	REV__ENST00000419769.6_1_10:127430814-127452038:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	515.8057861328125	2	515.803823	1029.59309	-0.17166	-8.8541E-05	4.0527	0.0020904	3.8811	0.0020019	515.8057522410776	136.15	1.0273	135.92	135.57	136.6	-0.22696					51	20	4	0	0	0	0.59259	1	13548	13548		32.812	6.1195	1	147900	+		17389	17866	14185	14207	19344	19344					0.07947950083121214
IDRTIFVLG	9	Unmodified	_IDRTIFVLG_					0	0	0		tr|A0A7D6VQZ7|A0A7D6VQZ7_9CLOTFerrousirontransportproteinBOS=ClostridiumintestinaleOX=36845GN=feoBPE=3SV=1	tr|A0A7D6VQZ7|A0A7D6VQZ7_9CLOTFerrousirontransportproteinBOS=ClostridiumintestinaleOX=36845GN=feoBPE=3SV=1	tr|A0A7D6VQZ7|A0A7D6VQZ7_9CLOTFerrousirontransportproteinBOS=ClostridiumintestinaleOX=36845GN=feoBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.7571411132812	2	517.305667	1032.59678	1.8505	0.00095726	-0.045475	-2.3524E-05	1.805	0.00093373	517.3054007358728	108.41	0.64417	108.41	108.16	108.8	0					30	14	3	0	0	0	0.027456	1	12278	12278		38.806	0	1	562530			17390	34883	14186	14208	19345	19345					0.08178619856994374
IDSCRLLAE	9	Unmodified	_IDSCRLLAE_					0	0	0			REV__ENSG00000142252|ENST00000270257|GEMIN7	REV__ENSG00000142252|ENST00000270257|GEMIN7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.7784729003906	2	510.263142	1018.51173	-1.3227	-0.0006749	-1.6636	-0.00084886	-2.9862	-0.0015238	510.2622422797798	73.089	0.58083	69.693	69.543	70.124	-3.3961					19	11	2	0	0	0	0.027446	1	5638	5638		69.628	12.907	1	37803	+		17391	19778	14187	14209	19346	19346					0.0032150632887351094
IDSHAPWIG	9	Unmodified	_IDSHAPWIG_					0	0	0			REV__nc|ENSG00000214595|Q6ZMW3-2|EML6	REV__nc|ENSG00000214595|Q6ZMW3-2|EML6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.78857421875	2	498.250892	994.48723	-0.0019866	-9.8982E-07	2.1738	0.0010831	2.1718	0.0010821	498.25284336477483	112.37	0.76019	110.86	110.63	111.39	-1.5111					21	14	3	0	0	0	0.027433	1	10389	10389		47.916	0	1	22402	+		17392	29130	14188	14210	19347	19347					-0.01023385762334783
IDSIVSRYR	9	Unmodified	_IDSIVSRYR_					0	0	0			REV__ENSG00000136878|ENST00000372429|USP20	REV__ENSG00000136878|ENST00000372429|USP20	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.2733764648438	2	554.809105	1107.60366	0.86834	0.00048176	-2.4768	-0.0013741	-1.6084	-0.00089237	554.8071288378497	158.92	0.57509	158.92	158.46	159.04	0					17	11	2	0	0	0	0.027447	1	18616	18616		39.253	12.56	1	100510	+		17393	19418	14189	14211	19348	19348					0.0541593273756007
IDSLDTLVV	9	Unmodified	_IDSLDTLVV_					0	0	0		ENSG00000116406|ENST00000318130|EDEM3;nc|ENSG00000116406|Q9BZQ6-2|EDEM3;ENST00000474725.5_1_1:184690416-184706818:-|nuORF	ENSG00000116406|ENST00000318130|EDEM3	ENSG00000116406|ENST00000318130|EDEM3	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.2608947753906	2	487.773865	973.533177	-0.19641	-9.5802E-05	1.8695	0.00091191	1.6731	0.0008161	487.77456207328987	68.765	0.4157	68.765	68.523	68.939	0					18	9	2	0	0	0	0.027462	1	6526	6526		38.806	8.3025	1	856760			17394	3177	14190	14212	19349	19349					0.045352146292543694
IDSSDVVVQVL	11	Unmodified	_IDSSDVVVQVL_					0	0	0		ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	MULTI-MSMS	OvCa9_classI_Rep4_	4	587.3234252929688	2	587.321711	1172.62887	3.6728	0.0021571	-3.394	-0.0019934	0.27882	0.00016376	587.3195203683586	132.01	0.86322	130.51	130.32	131.19	-1.5015					28	16	2	0	0	0	0.4646	1	12700	12700		56.434	17.181	1	56722			17395	4319	14191	14213	19350	19350					0.04945942749486676
IDSSDVVVQVL	11	Unmodified	_IDSSDVVVQVL_					0	0	0		ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	587.321711	1172.62887	-1.472	-0.00086455	1.4428	0.00084741	-0.029186	-1.7141E-05	587.3223440887352	131.71	0.69696	130.59	130.39	131.09	-1.1249	0.038656	0.0024754	NaN	56.434	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43857			17396	4319	14191	14213							0.04945942749486676
IDSSIEVIKPS	11	Unmodified	_IDSSIEVIKPS_					0	0	0			REV__nc|ENSG00000182667|Q9P121-3|NTM	REV__nc|ENSG00000182667|Q9P121-3|NTM	MULTI-SECPEP	OvCa9_classI_Rep4_	4	594.2996826171875	2	594.329536	1186.64452	0.1766	0.00010496	4.2024	0.0024976	4.379	0.0026026	594.3314940468518	76.462	0.23212	73.523	73.365	73.598	-2.9389					7	4	3	0	0	0	0.02568	1	6055	6055		78.264	23.541	1	20543	+		17397	22309	14192	14214	19351	19351					0.05866229266530354
IDSYYERKN	9	Unmodified	_IDSYYERKN_					0	0	0			REV__tr|A0A553SFY3|A0A553SFY3_NIACIMagnesiumtransportproteinCorAOS=NialliacirculansOX=1397GN=corAPE=3SV=1	REV__tr|A0A553SFY3|A0A553SFY3_NIACIMagnesiumtransportproteinCorAOS=NialliacirculansOX=1397GN=corAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.25537109375	2	594.288202	1186.56185	1.1524	0.00068484	-4.1082	-0.0024415	-2.9559	-0.0017566	594.2863387790208	115.07	0.41631	115.07	114.84	115.25	0					17	8	3	0	0	0	0.027441	1	13138	13138		58.782	0	1	195280	+		17398	29636	14193	14215	19352	19352					-0.023966677416183302
IDTCHRLAF	9	Unmodified	_IDTCHRLAF_					0	0	0		ENST00000496722.1_1_22:21976037-21976088:+|nuORF	ENST00000496722.1_1_22:21976037-21976088:+|nuORF	ENST00000496722.1_1_22:21976037-21976088:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.7899780273438	2	538.271301	1074.52805	-1.6787	-0.00090362	4.2208	0.0022719	2.5421	0.0013683	538.2734838712147	53.601	0.66359	50.382	50.241	50.904	-3.2191					22	12	2	0	0	0	0.027462	1	3263	3263		27.882	6.9353	1	71939			17399	12795	14194	14216	19353	19353					-0.0062336771438822325
IDTCHRLAF	9	Unmodified	_IDTCHRLAF_					0	0	0		ENST00000496722.1_1_22:21976037-21976088:+|nuORF	ENST00000496722.1_1_22:21976037-21976088:+|nuORF	ENST00000496722.1_1_22:21976037-21976088:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	538.271301	1074.52805	-1.8971	-0.0010211	3.1693	0.0017059	1.2722	0.00068477	538.2728579181169	53.538	0.39629	50.725	50.529	50.925	-2.8139	0.17129	-0.00070855	NaN	27.882	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12604			17400	12795	14194	14216							-0.0062336771438822325
IDTETKML	8	Unmodified	_IDTETKML_					0	0	0		L1ME4a_dup12675|chr6:37045387-37045843:+|1.4283673080813548|0.2832341124959364|2.33|429.0|6|1|sense	L1ME4a_dup12675|chr6:37045387-37045843:+|1.4283673080813548|0.2832341124959364|2.33|429.0|6|1|sense	L1ME4a_dup12675|chr6:37045387-37045843:+|1.4283673080813548|0.2832341124959364|2.33|429.0|6|1|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	475.74676513671875	2	475.746793	949.479033	1.7149	0.00081584	-2.8103	-0.001337	-1.0955	-0.00052116	475.7454050134716	98.345	1.081	98.345	97.995	99.076	0					50	25	3	0	0	0	0.37357	1	10824	10824		93.195	2.4188	1	1157300			17401	14621	14195	14217	19354	19354					0.002272992060170509
IDTGEHIRK	9	Unmodified	_IDTGEHIRK_					0	0	0			REV__tr|A0A553SJG6|A0A553SJG6_NIACIPeptidaseM23OS=NialliacirculansOX=1397GN=CEQ21_16750PE=4SV=1	REV__tr|A0A553SJG6|A0A553SJG6_NIACIPeptidaseM23OS=NialliacirculansOX=1397GN=CEQ21_16750PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.7940063476562	2	534.793455	1067.57236	-0.68562	-0.00036666	-0.19682	-0.00010526	-0.88243	-0.00047192	534.7931266980677	61.068	1.203	57.638	57.395	58.598	-3.43					47	24	3	0	0	0	0.46356	1	4175	4175		45.972	10.354	1	382580	+		17402	30005	14196	14218	19355	19355					0.04127359703466027
IDTGEHIRK	9	Unmodified	_IDTGEHIRK_					0	0	0			REV__tr|A0A553SJG6|A0A553SJG6_NIACIPeptidaseM23OS=NialliacirculansOX=1397GN=CEQ21_16750PE=4SV=1	REV__tr|A0A553SJG6|A0A553SJG6_NIACIPeptidaseM23OS=NialliacirculansOX=1397GN=CEQ21_16750PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	534.793455	1067.57236	-1.6652	-0.00089052	2.3458	0.0012545	0.68058	0.00036397	534.7938824089097	60.375	1.111	57.605	57.186	58.297	-2.7702	-0.016535	0.0019888	NaN	45.972	59	20	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200790	+		17403	30005	14196	14218							0.04127359703466027
IDTGEHIRK	9	Unmodified	_IDTGEHIRK_					0	0	0			REV__tr|A0A553SJG6|A0A553SJG6_NIACIPeptidaseM23OS=NialliacirculansOX=1397GN=CEQ21_16750PE=4SV=1	REV__tr|A0A553SJG6|A0A553SJG6_NIACIPeptidaseM23OS=NialliacirculansOX=1397GN=CEQ21_16750PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	534.793455	1067.57236	-0.68562	-0.00036666	-0.19682	-0.00010526	-0.88243	-0.00047192	534.7931266980677	61.068	1.203	57.638	57.395	58.598	-3.43	0.016535	-0.00073074	NaN	45.972	47	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	382580	+		17404	30005	14196	14218							0.04127359703466027
IDTHLPFGSP	10	Unmodified	_IDTHLPFGSP_					0	0	0			REV__ENST00000534138.1_1_19:50311551-50312077:-|nuORF	REV__ENST00000534138.1_1_19:50311551-50312077:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.2861328125	2	542.277106	1082.53966	-0.86748	-0.00047042	0.61588	0.00033398	-0.25161	-0.00013644	542.2773076673838	101.92	0.82954	99.721	99.371	100.2	-2.1994					43	15	4	0	0	0	0.026802	1	9191	9191		26.693	0	1	42548	+		17405	16479	14197	14219	19356	19356					0.001691525806336358
IDTILHVL	8	Unmodified	_IDTILHVL_					0	0	0		ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENSG00000213983|ENST00000397120|AP1G2;ENST00000556741.5_1_14:24032738-24033292:-|nuORF	ENST00000460049.6_1_14:24028960-24033376:-|nuORF	ENST00000460049.6_1_14:24028960-24033376:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	462.2810363769531	2	462.28166	922.548768	-1.0078	-0.00046591	1.2784	0.00059098	0.27057	0.00012508	462.2819699223311	116.57	1.0882	116.45	116.07	117.16	-0.12868					49	21	4	0	0	0	0.37872	2	11148	11143;11148		92.191	17.674	1	156910			17406	9159	14198	14220	19357;19358	19358					0.0843954593693752
IDTILHVL	8	Unmodified	_IDTILHVL_					0	0	0		ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENSG00000213983|ENST00000397120|AP1G2;ENST00000556741.5_1_14:24032738-24033292:-|nuORF	ENST00000460049.6_1_14:24028960-24033376:-|nuORF	ENST00000460049.6_1_14:24028960-24033376:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	462.2817077636719	2	462.28166	922.548768	-0.86734	-0.00040096	1.6917	0.00078205	0.82437	0.00038109	462.2818856539061	117.37	1.6346	116.33	115.75	117.38	-1.0324					65	32	3	0	0	0	0.28613	2	8810	8810;8816		109.7	40.611	1	142110			17407	9159	14198	14220	19359;19360	19359					0.0843954593693752
IDTILHVL	8	Unmodified	_IDTILHVL_					0	0	0		ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENSG00000213983|ENST00000397120|AP1G2;ENST00000556741.5_1_14:24032738-24033292:-|nuORF	ENST00000460049.6_1_14:24028960-24033376:-|nuORF	ENST00000460049.6_1_14:24028960-24033376:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.2808837890625	2	462.28166	922.548768	-1.2451	-0.00057557	1.3698	0.00063325	0.12476	5.7675E-05	462.28204328074327	117.68	1.5222	116.33	116	117.52	-1.3444					50	28	3	0	0	0	0.074156	3	11014	11004;11014;11027		150.07	49.796	1	199970			17408	9159	14198	14220	19361;19362;19363	19362					0.0843954593693752
IDTYGDHNMLT	11	Unmodified	_IDTYGDHNMLT_					0	0	0			REV__ENST00000291547.9_1_21:44394763-44427647:+|nuORF	REV__ENST00000291547.9_1_21:44394763-44427647:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	640.2844848632812	2	640.284802	1278.55505	2.0976	0.001343	-1.6737	-0.0010717	0.42383	0.00027137	640.2833027672766	108.76	1.259	108.76	108.2	109.46	0					61	28	3	0	0	0	0.48812	1	12307	12307		54.722	1.7857	1	1094400	+		17409	24155	14199	14221	19364	19364					-0.07308348684500743
IDVAIDATGPR	11	Unmodified	_IDVAIDATGPR_					0	0	0		ENSG00000165195|ENST00000333590|PIGA;nc|ENSG00000165195|P37287-3|PIGA;nc|ENSG00000165195|P37287-2|PIGA	ENSG00000165195|ENST00000333590|PIGA	ENSG00000165195|ENST00000333590|PIGA	MULTI-MSMS	OvCa9_classI_Rep2	2	564.30712890625	2	564.306395	1126.59824	-0.64094	-0.00036169	3.951	0.0022296	3.3101	0.0018679	564.3086346308005	121.22	1.0377	121.03	120.61	121.64	-0.19718					60	20	5	0	0	0	0.68399	1	11749	11749		35.152	3.5731	1	328140			17410	6535	14200	14222	19365	19365					0.04000209155083212
IDVEEYND	8	Unmodified	_IDVEEYND_					0	0	0			REV__tr|A0A7D6ZFM3|A0A7D6ZFM3_9CLOTcarbonicanhydraseOS=ClostridiumintestinaleOX=36845GN=HZF06_15575PE=3SV=1	REV__tr|A0A7D6ZFM3|A0A7D6ZFM3_9CLOTcarbonicanhydraseOS=ClostridiumintestinaleOX=36845GN=HZF06_15575PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.2865905761719	2	498.711462	995.408371	-0.46963	-0.00023421	-2.7719	-0.0013824	-3.2416	-0.0016166	498.7098640333315	67.729	0.58607	67.729	67.528	68.114	0					24	14	3	0	0	0	0.028476	1	6354	6354		51.335	0	1	1280700	+		17411	31976	14201	14223	19366	19366					-0.08951702577940068
IDVEVLNFN	9	Unmodified	_IDVEVLNFN_					0	0	0			REV__tr|A0A553ST74|A0A553ST74_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04210PE=4SV=1	REV__tr|A0A553ST74|A0A553ST74_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04210PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	531.3034057617188	2	531.776939	1061.53933	1.6009	0.00085133	-2.2231	-0.0011822	-0.62216	-0.00033085	531.7758213497729	122.33	0.99709	121.3	121.01	122	-1.0286					31	18	3	0	0	0	0.027447	1	9377	9377		47.657	5.2612	1	78625	+		17412	30924	14202	14224	19367	19367					0.011017328607749732
IDVGHILIA	9	Unmodified	_IDVGHILIA_					0	0	0			REV__ENSG00000137831|ENST00000322954|UACA	REV__ENSG00000137831|ENST00000322954|UACA	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.7870178222656	2	475.78711	949.559667	0.94635	0.00045026	-1.4711	-0.00069993	-0.52474	-0.00024966	475.7862320617159	113.57	1.4959	112.13	111.66	113.15	-1.4461					55	29	3	0	0	0	0.32337	1	10527	10527		60.294	7.9948	1	158300	+		17413	19486	14203	14225	19368	19368					0.08286948311240394
IDVLDQAGR	9	Unmodified	_IDVLDQAGR_					0	0	0			REV__ENSG00000129355|ENST00000393599|CDKN2D	REV__ENSG00000129355|ENST00000393599|CDKN2D	MULTI-MSMS	OvCa99_classI_Rep5	1	493.7667541503906	2	493.766906	985.519259	-0.34455	-0.00017013	-0.03518	-1.7371E-05	-0.37974	-0.0001875	493.76709506077066	63.641	0.99714	63.641	63.337	64.334	0					54	24	3	0	0	0	0.16562	1	5720	5720		82.241	2.7895	1	6905500	+		17414	18896	14204	14226	19369	19369					0.02591981920818398
IDVLRREL	8	Unmodified	_IDVLRREL_					0	0	0		nc|ENSG00000163050|Q8NI60-4|COQ8A;ENST00000485462.5_1_1:227165121-227174435:+|nuORF;nc|ENSG00000163050|Q8NI60-3|COQ8A;ENSG00000163050|ENST00000366777|COQ8A;ENST00000479852.1_1_1:227170717-227171625:+|nuORF;ENST00000478406.5_1_1:227171346-227171625:+|nuORF	nc|ENSG00000163050|Q8NI60-4|COQ8A	nc|ENSG00000163050|Q8NI60-4|COQ8A	MULTI-MSMS	OvCa99_classI_Rep5	1	507.3090515136719	2	507.308741	1012.60293	1.3199	0.00066962	0.55236	0.00028022	1.8723	0.00094984	507.3089326516071	93.528	0.57803	93.528	93.263	93.841	0					31	13	3	0	0	0	0.37357	1	10171	10171		93.195	2.4188	1	4354700			17415	6258	14205	14227	19370	19370					0.0971313808852301
IDVNGRAA	8	Unmodified	_IDVNGRAA_					0	0	0			REV__ENSG00000186106|ENST00000335659|ANKRD46	REV__ENSG00000186106|ENST00000335659|ANKRD46	MULTI-MSMS	OvCa9_classI_Rep2	2	408.2217712402344	2	408.222134	814.429715	-0.027736	-1.1322E-05	0.46194	0.00018857	0.4342	0.00017725	408.22219810033897	33.657	1.3881	30.947	30.571	31.959	-2.7097					59	27	3	0	0	0	0.73205	1	1248	1248		35.618	1.4457	1	367700	+		17416	22557	14206	14228	19371	19371					0.015077720320959997
IDVRDGLPTI	10	Unmodified	_IDVRDGLPTI_					0	0	0			REV__tr|A0A7D6VSP1|A0A7D6VSP1_9CLOTProteinadenylyltransferaseSelOOS=ClostridiumintestinaleOX=36845GN=selOPE=3SV=1	REV__tr|A0A7D6VSP1|A0A7D6VSP1_9CLOTProteinadenylyltransferaseSelOOS=ClostridiumintestinaleOX=36845GN=selOPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.8150634765625	2	549.811313	1097.60807	0.034147	1.8774E-05	2.473	0.0013597	2.5071	0.0013785	549.8124590860016	66.829	0.93765	63.339	63	63.938	-3.4902					67	18	5	0	0	0	0.49558	1	4907	4907		54.776	1.6874	1	1428600	+		17417	31527	14207	14229	19372	19372					0.06317397160478322
IDVRLALL	8	Unmodified	_IDVRLALL_					0	0	0		tr|A0A7D6VMQ7|A0A7D6VMQ7_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12725PE=4SV=1	tr|A0A7D6VMQ7|A0A7D6VMQ7_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12725PE=4SV=1	tr|A0A7D6VMQ7|A0A7D6VMQ7_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12725PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.7149658203125	2	456.797478	911.580402	-0.47475	-0.00021686	0.015198	6.9426E-06	-0.45955	-0.00020992	456.79735070634644	39.528	0.46357	39.528	39.376	39.84	0					16	10	3	0	0	0	0.028476	1	2365	2365		31.955	11.473	1	261410			17418	34667	14208	14230	19373	19373					0.12107538690884212
IDVRNTVAIV	10	Unmodified	_IDVRNTVAIV_					0	0	0			REV__ENST00000441073.1_1_9:19027536-19027863:+|nuORF	REV__ENST00000441073.1_1_9:19027536-19027863:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	550.3272094726562	2	550.327131	1098.63971	-0.8792	-0.00048385	-0.44419	-0.00024445	-1.3234	-0.0007283	550.3268942315257	85.56	1.6104	84.069	83.505	85.115	-1.4907					109	31	5	0	0	0	0.39172	1	7419	7419		69.628	2.134	1	1857300	+		17419	25839	14209	14231	19374	19374					0.09433389914420331
IDVRNTVAIV	10	Unmodified	_IDVRNTVAIV_					0	0	0			REV__ENST00000441073.1_1_9:19027536-19027863:+|nuORF	REV__ENST00000441073.1_1_9:19027536-19027863:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	550.327880859375	2	550.327131	1098.63971	-1.5395	-0.00084725	0.74414	0.00040952	-0.79539	-0.00043772	550.3275660732565	84.687	1.7638	82.426	81.881	83.645	-2.261					107	35	5	0	0	0	0.39172	1	4938	4938		69.628	0.78148	1	1227100	+		17420	25839	14209	14231	19375	19375					0.09433389914420331
IDVRNTVAIV	10	Unmodified	_IDVRNTVAIV_					0	0	0			REV__ENST00000441073.1_1_9:19027536-19027863:+|nuORF	REV__ENST00000441073.1_1_9:19027536-19027863:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	550.3274536132812	2	550.327131	1098.63971	-1.5659	-0.00086175	0.7839	0.0004314	-0.78198	-0.00043035	550.3275336090328	86.284	1.4089	84.064	83.686	85.095	-2.2204					106	27	5	0	0	0	0.26424	2	5122	5122;5147		85.161	2.4103	1	3899600	+		17421	25839	14209	14231	19376;19377	19376					0.09433389914420331
IDVTEVVEVG	10	Unmodified	_IDVTEVVEVG_					0	0	0		nc|ENSG00000156414|Q8NDG6-2|TDRD9;ENSG00000156414|ENST00000409874|TDRD9	nc|ENSG00000156414|Q8NDG6-2|TDRD9	nc|ENSG00000156414|Q8NDG6-2|TDRD9	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8359985351562	2	530.282054	1058.54956	1.2769	0.00067711	0.85586	0.00045385	2.1327	0.001131	530.2826376791647	124.74	0.60228	124.74	124.47	125.07	0					16	12	2	0	0	0	0.026752	1	14369	14369		44.117	0	1	71206			17422	5838	14210	14232	19378	19378					0.02262295795344471
IDYDKRKAYN	10	Unmodified	_IDYDKRKAYN_					0	0	0			REV__tr|A0A7D6VP91|A0A7D6VP91_9CLOTHlyDfamilyeffluxtransporterperiplasmicadaptorsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_22090PE=3SV=1	REV__tr|A0A7D6VP91|A0A7D6VP91_9CLOTHlyDfamilyeffluxtransporterperiplasmicadaptorsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_22090PE=3SV=1	MSMS	OvCa9_classI_Rep4_	4	429.27020263671875	3	429.222693	1284.64625	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.031	1	18.693	18.193	19.193	-1.3386								0	0	0	0.15148	1	4	4		41.427	1.3684	1		+		17423	31235	14211	14233	19379	19379					0.01531283075155443
IDYEAIVKL	9	Unmodified	_IDYEAIVKL_					0	0	0		ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	MULTI-MSMS	OvCa9_classI_Rep3	3	532.3038940429688	2	532.305332	1062.59611	0.77508	0.00041258	-1.2561	-0.00066864	-0.48104	-0.00025606	532.304497197436	119.19	1.0896	118.16	117.88	118.97	-1.0271					49	21	4	0	0	0	0.2077	1	9026	9026		75.043	3.7476	1	129730			17424	2080	14212	14234	19380	19380					0.0673178041729443
IDYEAIVKL	9	Unmodified	_IDYEAIVKL_					0	0	0		ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.3052368164062	2	532.305332	1062.59611	-2.5204	-0.0013416	2.0176	0.001074	-0.50286	-0.00026767	532.3063134660608	119.35	1.2492	118.01	117.78	119.03	-1.3444					55	23	3	0	0	0	0.40818	1	11207	11207		51.193	8.7966	1	153090			17425	2080	14212	14234	19381	19381					0.0673178041729443
IDYKGGGMAQ	10	Unmodified	_IDYKGGGMAQ_					0	0	0		tr|A0A553SHZ8|A0A553SHZ8_NIACITypeVIIsecretionproteinEssCOS=NialliacirculansOX=1397GN=essCPE=4SV=1	tr|A0A553SHZ8|A0A553SHZ8_NIACITypeVIIsecretionproteinEssCOS=NialliacirculansOX=1397GN=essCPE=4SV=1	tr|A0A553SHZ8|A0A553SHZ8_NIACITypeVIIsecretionproteinEssCOS=NialliacirculansOX=1397GN=essCPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.7930297851562	2	520.247492	1038.48043	-2.4358	-0.0012672	0.57974	0.00030161	-1.8561	-0.00096561	520.247698234136	87.868	0.85595	85.247	84.856	85.712	-2.6209					25	16	2	0	0	0	0.026826	1	7443	7443		44.377	0	1	18801			17426	33331	14213	14235	19382	19382					-0.03727066705209836
IDYVLLVGQ	9	Unmodified	_IDYVLLVGQ_					0	0	0			REV__nc|ENSG00000157869|P51157-3|RAB28	REV__nc|ENSG00000157869|P51157-3|RAB28	MULTI-MSMS	OvCa9_classI_Rep3	3	510.2933654785156	2	510.292225	1018.5699	-0.10295	-5.2533E-05	-0.35586	-0.00018159	-0.45881	-0.00023413	510.29192022253056	78.974	1.4952	76.634	76.264	77.759	-2.3399					95	29	5	0	0	0	0.36502	1	4249	4249		55.504	0	1	970550	+		17427	20538	14214	14236	19383	19383					0.061355112458159056
IEAAVQDRL	9	Unmodified	_IEAAVQDRL_					0	0	0		ENSG00000113194|ENST00000261942|FAF2	ENSG00000113194|ENST00000261942|FAF2	ENSG00000113194|ENST00000261942|FAF2	MSMS	OvCa99_classI_Rep5	1	507.7834167480469	2	507.782556	1013.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.012	1	70.012	69.512	70.512	0								0	0	0	0.14402	1	6691	6691		65.157	1.6234	1				17428	2952	14215	14237	19384	19384					0.04432554954905754
IEAGKEKLEI	10	Unmodified	_IEAGKEKLEI_					0	0	0		tr|A0A553SIB9|A0A553SIB9_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_14555PE=3SV=1	tr|A0A553SIB9|A0A553SIB9_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_14555PE=3SV=1	tr|A0A553SIB9|A0A553SIB9_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_14555PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	565.3261108398438	2	565.326796	1128.63904	-0.14575	-8.2398E-05	0.66741	0.0003773	0.52165	0.00029491	565.3270314467675	55.355	1.028	55.355	55.107	56.135	0					75	24	5	0	0	0	0.048965	1	4536	4536		129.42	3.1787	1	3605000			17429	33364	14216	14238	19385	19385					0.07986550474697651
IEAIRGQIL	9	Unmodified	_IEAIRGQIL_					0	0	0		ENSG00000105329|ENST00000221930|TGFB1;ENSG00000092969|ENST00000366930|TGFB2;nc|ENSG00000092969|P61812-2|TGFB2	ENSG00000105329|ENST00000221930|TGFB1	ENSG00000105329|ENST00000221930|TGFB1	MULTI-MSMS	OvCa9_classI_Rep3	3	506.81207275390625	2	506.811116	1011.60768	-0.96963	-0.00049142	-0.36531	-0.00018514	-1.3349	-0.00067656	506.8110395873254	89.248	2.4224	87.118	86.702	89.124	-2.1309					173	47	5	0	0	0	0.26076	1	5569	5569		67.494	5.3863	1	9108500			17430	2442	14217	14239	19386	19386					0.10234022231293238
IEAIRGQIL	9	Unmodified	_IEAIRGQIL_					0	0	0		ENSG00000105329|ENST00000221930|TGFB1;ENSG00000092969|ENST00000366930|TGFB2;nc|ENSG00000092969|P61812-2|TGFB2	ENSG00000105329|ENST00000221930|TGFB1	ENSG00000105329|ENST00000221930|TGFB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.8126525878906	2	506.811116	1011.60768	0.31561	0.00015995	-1.485	-0.00075259	-1.1694	-0.00059264	506.81045586251577	89.749	2.4253	87.174	86.704	89.129	-2.575					167	47	5	0	0	0	0.1944	2	7808	7795;7808		77.318	8.7828	1	8441000			17431	2442	14217	14239	19387;19388	19388					0.10234022231293238
IEAIYYFLV	9	Unmodified	_IEAIYYFLV_					0	0	0		nc|ENSG00000104047|Q8N5C7-2|DTWD1;ENSG00000104047|ENST00000403028|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	nc|ENSG00000104047|Q8N5C7-2|DTWD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.3377075195312	2	565.810251	1129.60595	-0.36238	-0.00020504	3.2461	0.0018367	2.8838	0.0016317	565.8119429058569	42.333	0.68512	42.333	42.111	42.796	0					33	15	4	0	0	0	0.027462	1	2699	2699		17.365	0	1	996160			17432	2348	14218	14240	19389	19389					0.04632968422652084
IEAKMEHI	8	Unmodified	_IEAKMEHI_					0	0	0			REV__ENSG00000075234|ENST00000381031|TTC38	REV__ENSG00000075234|ENST00000381031|TTC38	MULTI-MSMS	OvCa99_classI_Rep5	1	485.7584533691406	2	485.754953	969.495352	1.4698	0.00071397	-2.4202	-0.0011756	-0.95037	-0.00046165	485.7534646179057	114.99	1.6744	114.99	114.7	116.37	0					51	35	2	0	0	0	0.65062	1	13149	13149		53.351	12.779	1	106630	+		17433	16965	14219	14241	19390	19390					0.009384251627921003
IEALKEELL	9	Unmodified	_IEALKEELL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF;ENST00000581937.1_1_18:9678609-9679128:-|nuORF;ENST00000505048.1_1_5:108924410-108924794:+|nuORF;ENST00000527480.1_1_11:6015523-6015940:-|nuORF;CON__H-INV:HIT000015463;ENST00000434763.1_1_X:152869982-152870534:-|nuORF;ENST00000396959.2_1_3:12829056-12829584:-|nuORF;ENST00000439811.1_1_6:112683280-112683757:-|nuORF;ENST00000515347.2_1_5:79584647-79585058:+|nuORF;ENST00000398525.2_1_2:65894186-65894534:+|nuORF;ENST00000452408.1_1_6:28937434-28937611:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa9_classI_Rep3	3	529.310791015625	2	529.310615	1056.60668	-0.86239	-0.00045647	-0.89501	-0.00047374	-1.7574	-0.00093021	529.3100130228925	100.43	1.1859	98.826	98.47	99.656	-1.6053					39	23	3	0	0	0	0.14445	1	6817	6817		85.862	5.4072	1	267980			17434	2808	14220	14242	19391	19391					0.08063763071709218
IEALKEELL	9	Unmodified	_IEALKEELL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF;ENST00000581937.1_1_18:9678609-9679128:-|nuORF;ENST00000505048.1_1_5:108924410-108924794:+|nuORF;ENST00000527480.1_1_11:6015523-6015940:-|nuORF;CON__H-INV:HIT000015463;ENST00000434763.1_1_X:152869982-152870534:-|nuORF;ENST00000396959.2_1_3:12829056-12829584:-|nuORF;ENST00000439811.1_1_6:112683280-112683757:-|nuORF;ENST00000515347.2_1_5:79584647-79585058:+|nuORF;ENST00000398525.2_1_2:65894186-65894534:+|nuORF;ENST00000452408.1_1_6:28937434-28937611:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.3102416992188	2	529.310615	1056.60668	-1.6135	-0.00085404	-0.15136	-8.0118E-05	-1.7649	-0.00093416	529.3101201701135	100.96	1.1111	98.693	98.446	99.557	-2.2665					31	22	2	0	0	0	0.1243	1	9046	9046		90.601	0	1	194830			17435	2808	14220	14242	19392	19392					0.08063763071709218
IEALKKELTE	10	Unmodified	_IEALKKELTE_					0	0	0		tr|A0A553SFN0|A0A553SFN0_NIACIAcetylornithineaminotransferaseOS=NialliacirculansOX=1397GN=argDPE=3SV=1	tr|A0A553SFN0|A0A553SFN0_NIACIAcetylornithineaminotransferaseOS=NialliacirculansOX=1397GN=argDPE=3SV=1	tr|A0A553SFN0|A0A553SFN0_NIACIAcetylornithineaminotransferaseOS=NialliacirculansOX=1397GN=argDPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.280029296875	2	587.339904	1172.66525	2.3482	0.0013792	-0.73062	-0.00042912	1.6175	0.00095005	587.3398324427815	94.748	0.55785	94.748	94.517	95.075	0					16	12	2	0	0	0	0.026782	1	10298	10298		23.523	0	1	413940			17436	33054	14221	14243	19393	19393					0.08582819646153439
IEALKLIEE	9	Unmodified	_IEALKLIEE_					0	0	0		tr|A0A7D6VY53|A0A7D6VY53_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=spo0APE=4SV=1	tr|A0A7D6VY53|A0A7D6VY53_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=spo0APE=4SV=1	tr|A0A7D6VY53|A0A7D6VY53_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=spo0APE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.3109741210938	2	529.310615	1056.60668	-1.6135	-0.00085404	-0.15136	-8.0118E-05	-1.7649	-0.00093416	529.3101201701135	100.96	1.1111	98.693	98.446	99.557	-2.2665					31	22	2	0	0	0	0.37135	1	9060	9060		54.776	1.4249	1	194830			17437	35317	14222	14244	19394	19394					0.08063763071709218
IEALSSKVQQ	10	Unmodified	_IEALSSKVQQ_					0	0	0		TRAF2|p.K313R|1|0.25|ENSG00000127191|chr9:136920493-136920493|A/G|missense_variant;nc|ENSG00000127191|Q12933-4|TRAF2;nc|ENSG00000127191|Q12933-3|TRAF2;ENSG00000127191|ENST00000247668|TRAF2;nc|ENSG00000127191|Q12933-2|TRAF2	TRAF2|p.K313R|1|0.25|ENSG00000127191|chr9:136920493-136920493|A/G|missense_variant	TRAF2|p.K313R|1|0.25|ENSG00000127191|chr9:136920493-136920493|A/G|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	551.8108520507812	2	551.808771	1101.60299	-0.30408	-0.00016779	4.0847	0.002254	3.7806	0.0020862	551.8108897919161	33.211	0.98011	33.211	32.941	33.921	0					38	19	3	0	0	0	0.66721	1	1506	1506		34.173	1.3601	1	329940			17438	3822	14223	14245	19395	19395					0.05625093297862804
IEAMFQKMND	10	Unmodified	_IEAMFQKMND_					0	0	0		tr|A0A553SSM7|A0A553SSM7_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_03370PE=4SV=1	tr|A0A553SSM7|A0A553SSM7_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_03370PE=4SV=1	tr|A0A553SSM7|A0A553SSM7_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_03370PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	612.8155517578125	2	613.780841	1225.54713	-0.44907	-0.00027563	-0.25091	-0.000154	-0.69998	-0.00042963	613.7809063317471	59.819	0.39156	59.819	59.647	60.039	0					13	9	2	0	0	0	0.027117	1	5201	5201		16.007	0	1	463970			17439	34391	14224	14246	19396	19396					-0.05662199205607976
IEAMKRPL	8	Unmodified	_IEAMKRPL_					0	0	0			REV__ENSG00000188559|ENST00000202677|RALGAPA2	REV__ENSG00000188559|ENST00000202677|RALGAPA2	MULTI-MSMS	OvCa9_classI_Rep3	3	479.2807922363281	2	479.281137	956.547722	-0.4527	-0.00021697	-3.0726	-0.0014726	-3.5253	-0.0016896	479.2796688729981	96.325	1.9148	94.496	94.027	95.941	-1.8286					106	37	4	0	0	0	0.34187	1	6308	6308		99.375	5.3685	1	3171600	+		17440	22718	14225	14247	19397	19397					0.0677100829640267
IEANGKSL	8	Unmodified	_IEANGKSL_					0	0	0		tr|A0A553SH22|A0A553SH22_NIACIUPF0173metal-dependenthydrolaseCEQ21_12005OS=NialliacirculansOX=1397GN=CEQ21_12005PE=3SV=1	tr|A0A553SH22|A0A553SH22_NIACIUPF0173metal-dependenthydrolaseCEQ21_12005OS=NialliacirculansOX=1397GN=CEQ21_12005PE=3SV=1	tr|A0A553SH22|A0A553SH22_NIACIUPF0173metal-dependenthydrolaseCEQ21_12005OS=NialliacirculansOX=1397GN=CEQ21_12005PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	416.2323913574219	2	416.232168	830.449782	-0.17845	-7.4277E-05	0.35178	0.00014642	0.17333	7.2146E-05	416.23218458178195	34.937	0.7029	34.937	34.772	35.475	0					35	14	4	0	0	0	0.53531	1	1724	1724		73.975	2.679	1	662000			17441	33225	14226	14248	19398	19398					0.027775229720305106
IEANNALGNV	10	Unmodified	_IEANNALGNV_					0	0	0			REV__ENSG00000185052|ENST00000328041|SLC24A3	REV__ENSG00000185052|ENST00000328041|SLC24A3	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.765625	2	507.764363	1013.51417	-0.74501	-0.00037829	-0.022867	-1.1611E-05	-0.76788	-0.0003899	507.7640165755125	63.315	2.1825	59.84	58.797	60.98	-3.475					83	34	4	0	0	0	0.64697	1	4475	4475		36.447	2.2742	1	871910	+		17442	22476	14227	14249	19399	19399					0.007956780581935163
IEAQLGDVRA	10	Unmodified	_IEAQLGDVRA_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;ENST00000557173.1_1_12:95228580-95228931:+|nuORF;ENST00000405746.1_1_6:72295335-72295494:+|nuORF	CON__P08727	CON__P08727	MSMS	OvCa9_classI_Rep4_	4	536.2929077148438	2	536.293288	1070.57202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.301	1	74.484	73.984	74.984	-2.8165								0	0	0	0.083265	1	6176	6176		99.788	3.9727	1			+	17443	625	14228	14250	19400	19400					0.039559399836207376
IEARQPEL	8	Unmodified	_IEARQPEL_					0	0	0			REV__tr|A0A553SMK8|A0A553SMK8_NIACIRing-cleavingdioxygenaseOS=NialliacirculansOX=1397GN=CEQ21_22800PE=4SV=1	REV__tr|A0A553SMK8|A0A553SMK8_NIACIRing-cleavingdioxygenaseOS=NialliacirculansOX=1397GN=CEQ21_22800PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	478.2642517089844	2	478.263999	954.513445	-1.4372	-0.00068734	0.98646	0.00047179	-0.45069	-0.00021555	478.2643712792569	61.352	1.7932	58.593	57.987	59.78	-2.7593					85	34	5	0	0	0	0.64026	1	4572	4572		55.504	0	1	559570	+		17444	30342	14229	14251	19401	19401					0.03436883409131042
IEARTIPQK	9	Unmodified	_IEARTIPQK_					0	0	0			REV__tr|A0A553SL29|A0A553SL29_NIACISegregationandcondensationproteinBOS=NialliacirculansOX=1397GN=scpBPE=3SV=1	REV__tr|A0A553SL29|A0A553SL29_NIACISegregationandcondensationproteinBOS=NialliacirculansOX=1397GN=scpBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.2999267578125	2	528.314023	1054.61349	-1.3778	-0.0007279	1.1468	0.00060585	-0.23102	-0.00012205	528.3146122546466	48.462	0.77726	45.354	45.141	45.918	-3.1077					22	14	2	0	0	0	0.027462	1	2738	2738		19.997	0	1	37706	+		17445	30177	14230	14252	19402	19402					0.08837120742941806
IEASFPME	8	Oxidation (M)	_IEASFPM(Oxidation (M))E_		IEASFPM(1)E		IEASFPM(50)E	0	0	1		nc|ENSG00000115155|Q9HC10-2|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF;OTOF|p.G1754Efs*4|1|0.04|ENSG00000115155|chr2:26462109-26462113|CTCCC/-|frameshift_variant	nc|ENSG00000115155|Q9HC10-2|OTOF	nc|ENSG00000115155|Q9HC10-2|OTOF	MULTI-MSMS	OvCa9_classI_Rep2	2	470.210693359375	2	470.210043	938.405534	0.22869	0.00010753	2.242	0.0010542	2.4707	0.0011618	470.21095810442347	111.25	1.4293	111.11	110.73	112.16	-0.13961					80	28	4	0	0	0	0.66704	1	10525	10525		50.025	7.5501	1	321870			17446	14974	14231	14253	19403	19403		365			-0.06613249236431784
IEASLRELL	9	Unmodified	_IEASLRELL_					0	0	0			REV__ENSG00000189431|ENST00000529419|RASSF10	REV__ENSG00000189431|ENST00000529419|RASSF10	MULTI-MSMS	OvCa99_classI_Rep5	1	522.3092041015625	2	522.308406	1042.60226	0.77176	0.0004031	0.66961	0.00034974	1.4414	0.00075284	522.3087210801356	103.16	0.79565	103.16	102.93	103.73	0					47	18	4	0	0	0	0.1944	1	11538	11538		77.318	3.0625	1	1687900	+		17447	22778	14232	14254	19404	19404					0.08266298648823067
IEAVKVLIE	9	Unmodified	_IEAVKVLIE_					0	0	0		nc|ENSG00000094841|Q96BW1-3|UPRT;ENST00000462237.5_1_X:74514443-74523343:+|nuORF;ENSG00000094841|ENST00000373383|UPRT	nc|ENSG00000094841|Q96BW1-3|UPRT	nc|ENSG00000094841|Q96BW1-3|UPRT	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.3155822753906	2	507.3157	1012.61685	-0.45576	-0.00023121	-0.10681	-5.4186E-05	-0.56257	-0.0002854	507.31539890745773	105.64	1.2079	103.63	103.3	104.51	-2.0161					49	23	3	0	0	0	0.17606	1	9588	9588		80.455	2.1908	1	353210			17448	1914	14233	14255	19405	19405					0.11104370796965668
IEAVRLGPR	9	Unmodified	_IEAVRLGPR_					0	0	0			REV__ENST00000478793.1_1_3:113666916-113667543:+|nuORF	REV__ENST00000478793.1_1_3:113666916-113667543:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.8096923828125	2	505.808908	1009.60326	-0.83897	-0.00042436	-0.12157	-6.1492E-05	-0.96054	-0.00048585	505.80875869727646	74.191	1.4813	70.96	70.579	72.061	-3.2308					53	30	2	0	0	0	0.55011	1	5800	5800		37.812	5.8567	1	633360	+		17449	26423	14234	14256	19406	19406					0.098845578083683
IEAVWLGLLL	10	Unmodified	_IEAVWLGLLL_					0	0	0			REV__ENSG00000165799|ENST00000298690|RNASE7	REV__ENSG00000165799|ENST00000298690|RNASE7	MULTI-MSMS	OvCa99_classI_Rep5	1	563.8414306640625	2	563.847167	1125.67978	2.3577	0.0013294	-3.823	-0.0021556	-1.4653	-0.0008262	563.8449727259887	116.5	3.3735	116.5	116.09	119.47	0					183	72	6	0	0	0	0.56767	1	13450	13450		45.952	4.5253	1	12349000	+		17450	21117	14235	14257	19407	19407					0.12196936584996365
IECQKKLI	8	Unmodified	_IECQKKLI_					0	0	0		nc|ENSG00000163681|Q14BN4-3|SLMAP;nc|ENSG00000163681|Q14BN4|SLMAP;ENSG00000163681|ENST00000671191|SLMAP	nc|ENSG00000163681|Q14BN4-3|SLMAP	nc|ENSG00000163681|Q14BN4-3|SLMAP	MULTI-MSMS	OvCa9_classI_Rep3	3	487.790283203125	2	487.788795	973.563038	-0.81941	-0.0003997	2.8605	0.0013953	2.0411	0.00099561	487.79010480424614	132.71	4.2431	131.59	130.54	134.78	-1.1249					147	85	2	0	0	0	0.75241	1	10860	10860		25.45	0.93098	1	99955			17451	6345	14236	14258	19408	19408					0.0751987509358969
IEDDDEAYQM	10	Unmodified	_IEDDDEAYQM_					0	0	0			REV__POLR2B|p.D11A|1|0.11|ENSG00000047315|chr4:56986366-56986366|A/C|missense_variant	REV__POLR2B|p.D11A|1|0.11|ENSG00000047315|chr4:56986366-56986366|A/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	614.7390747070312	2	614.737351	1227.46015	-2.0204	-0.001242	4.183	0.0025715	2.1627	0.0013295	614.7404537850678	118.46	2.2258	118.31	117.89	120.11	-0.14755					114	44	5	0	0	0	0.37436	1	11367	11367		71.877	24.22	1	750750	+		17452	29310	14237	14259	19409	19409					-0.14448326946376255
IEDEKELEAL	10	Unmodified	_IEDEKELEAL_					0	0	0		tr|A0A553SFL1|A0A553SFL1_NIACIDUF2268domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09115PE=4SV=1	tr|A0A553SFL1|A0A553SFL1_NIACIDUF2268domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09115PE=4SV=1	tr|A0A553SFL1|A0A553SFL1_NIACIDUF2268domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09115PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	594.8228149414062	2	594.803351	1187.59215	0.734	0.00043658	-1.1094	-0.0006599	-0.37545	-0.00022332	594.8040799434895	86.932	0.4463	84.305	84.103	84.549	-2.6269					11	8	2	0	0	0	0.02663	1	7354	7354		51.193	0	1	25239			17453	33047	14238	14260	19410	19410					0.00585646132913098
IEDEVVEVEN	10	Unmodified	_IEDEVVEVEN_					0	0	0		ENSG00000164332|ENST00000296786|UBLCP1	ENSG00000164332|ENST00000296786|UBLCP1	ENSG00000164332|ENST00000296786|UBLCP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.2158203125	2	587.777333	1173.54011	-0.25988	-0.00015275	0.7257	0.00042655	0.46582	0.0002738	587.7776537307047	61.09	0.60104	61.09	60.688	61.289	0					23	13	3	0	0	0	0.026523	1	5347	5347		71.877	17.101	1	360920			17454	6449	14239	14261	19411	19411					-0.039715172808200805
IEDGGLFIPM	10	Unmodified	_IEDGGLFIPM_					0	0	0		ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;nc|ENSG00000116580|Q3T8J9-2|GON4L;ENST00000471341.5_1_1:155785942-155827007:-|nuORF	ENSG00000116580|ENST00000368331|GON4L	ENSG00000116580|ENST00000368331|GON4L	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.828857421875	2	546.275718	1090.53688	1.6357	0.00089356	-0.72363	-0.0003953	0.91211	0.00049826	546.7766659077328	125.53	1.623	125.53	125.11	126.73	0					60	37	3	0	0	0	0.026915	1	14492	14492		27.882	5.9224	1	122220			17455	3187	14240	14262	19412	19412					-0.004764388685771337
IEDGGLFIPM	10	Unmodified	_IEDGGLFIPM_					0	0	0		ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;nc|ENSG00000116580|Q3T8J9-2|GON4L;ENST00000471341.5_1_1:155785942-155827007:-|nuORF	ENSG00000116580|ENST00000368331|GON4L	ENSG00000116580|ENST00000368331|GON4L	MULTI-MATCH	OvCa9_classI_Rep3	3		2	546.275718	1090.53688	0.92057	0.00050288	2.2034	0.0012037	3.124	0.0017066	546.2748373488505	126.85	0.73543	125.78	125.34	126.07	-1.0715	0.12619	0.0024919	NaN	27.882	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11327			17456	3187	14240	14262							-0.004764388685771337
IEDGVLQFL	9	Unmodified	_IEDGVLQFL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;COL6A3|p.T1393Cfs*9|1|0.09|ENSG00000163359|chr2:237371828-237371840|GCTCCCGGAAGGT/-|frameshift_variant;COL6A3|p.K1001Nfs*34|1|0.23|ENSG00000163359|chr2:237376800-237376839|TTTTAAGAGATTCACTATCTGTGGATGAAGATCTCCAATC/-|frameshift_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	517.28369140625	2	517.281857	1032.54916	0.7446	0.00038517	1.4624	0.00075649	2.207	0.0011417	517.2824814279011	154.73	1.213	154.73	154.42	155.63	0					61	23	4	0	0	0	0.16562	1	18141	18141		82.241	8.2658	1	675230			17457	6293	14241	14263	19413	19413					0.034189208661246084
IEDGVPQHL	9	Unmodified	_IEDGVPQHL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	504.2627868652344	2	504.261456	1006.50836	0.41342	0.00020847	-0.7985	-0.00040265	-0.38508	-0.00019418	504.26105932020806	72.508	1.8124	72.508	72.208	74.02	0					121	45	6	0	0	0	0.070405	3	7072	7042;7072;7142		107.01	32.752	1	61068000			17458	6293	14242	14264	19414;19415;19416	19415					0.005365795465081646
IEDHECAVW	9	Unmodified	_IEDHECAVW_					0	0	0		ENST00000607742.5_1_6:158538757-158579378:-|nuORF;nc|ENSG00000122335|Q96JX3-2|SERAC1;ENSG00000122335|ENST00000647468|SERAC1;nc|ENSG00000122335|Q96JX3-3|SERAC1	ENST00000607742.5_1_6:158538757-158579378:-|nuORF	ENST00000607742.5_1_6:158538757-158579378:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.8138427734375	2	551.237124	1100.45969	0.35023	0.00019306	2.1653	0.0011936	2.5155	0.0013867	551.2379087433292	81.319	0.33115	81.319	81.162	81.493	0					17	7	3	0	0	0	0.027462	1	8365	8365		25.45	0	1	322540			17459	3526	14243	14265	19417	19417					-0.08651657084897124
IEDIDAKRV	9	Unmodified	_IEDIDAKRV_					0	0	0		tr|A0A7D6VSL3|A0A7D6VSL3_9CLOTRecombinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13320PE=4SV=1	tr|A0A7D6VSL3|A0A7D6VSL3_9CLOTRecombinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13320PE=4SV=1	tr|A0A7D6VSL3|A0A7D6VSL3_9CLOTRecombinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13320PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.2833862304688	2	529.795663	1057.57677	-0.14775	-7.8276E-05	-1.1033	-0.00058452	-1.251	-0.00066279	529.7949013266558	89.7	1.4118	87.125	86.851	88.262	-2.575					39	27	3	0	0	0	0.027462	1	7803	7803		34.173	0	1	144980			17460	35034	14244	14266	19418	19418					0.05028824126384279
IEDIESVLN	9	Unmodified	_IEDIESVLN_					0	0	0			REV__tr|A0A553SP89|A0A553SP89_NIACIUDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)pyrophosphoryl-undecaprenolN-acetylglucosaminetransferaseOS=NialliacirculansOX=1397GN=murGPE=3SV=1	REV__tr|A0A553SP89|A0A553SP89_NIACIUDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)pyrophosphoryl-undecaprenolN-acetylglucosaminetransferaseOS=NialliacirculansOX=1397GN=murGPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.8229370117188	2	516.266404	1030.51826	-1.4727	-0.00076033	2.2204	0.0011463	0.74763	0.00038598	516.2669107511396	120.07	0.57716	118.73	118.35	118.93	-1.3444					15	10	3	0	0	0	0.027462	1	11288	11288		27.882	0	1	9421	+		17461	30512	14245	14267	19419	19419					0.004217227612343777
IEDILPHSEAL	11	Unmodified	_IEDILPHSEAL_					0	0	0			REV__ENSG00000153066|ENST00000283033|TXNDC11	REV__ENSG00000153066|ENST00000283033|TXNDC11	MULTI-SECPEP	OvCa9_classI_Rep2	2	412.926513671875	3	412.887199	1235.63977	-0.24648	-0.00010177	-1.7395	-0.00071821	-1.986	-0.00081998	412.8864485012811	55.039	0.25044	52.225	52.022	52.272	-2.8139					5	4	2	0	0	0	0.025668	1	3802	3802		22.562	1.7244	1	6177.2	+		17462	20319	14246	14268	19420	19420					0.03137345123764135
IEDINKPLI	9	Unmodified	_IEDINKPLI_					0	0	0			REV__tr|A0A7D6VU38|A0A7D6VU38_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_00265PE=4SV=1	REV__tr|A0A7D6VU38|A0A7D6VU38_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_00265PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.833251953125	2	527.810782	1053.60701	-0.88943	-0.00046945	-2.5401	-0.0013407	-3.4295	-0.0018101	527.8097878144978	105.82	0.35223	103.8	103.6	103.95	-2.0161					10	6	2	0	0	0	0.027403	1	9604	9604		79.713	14.247	1	10535	+		17463	31648	14247	14269	19421	19421					0.08235182791577245
IEDIPKEVL	9	Unmodified	_IEDIPKEVL_					0	0	0		ENSG00000147419|ENST00000356537|CCDC25	ENSG00000147419|ENST00000356537|CCDC25	ENSG00000147419|ENST00000356537|CCDC25	MULTI-MSMS	OvCa9_classI_Rep3	3	528.3038940429688	2	528.30279	1054.59103	-0.97486	-0.00051502	0.39761	0.00021006	-0.57725	-0.00030496	528.3028100584	95.427	1.1409	93.532	93.063	94.204	-1.8956					80	22	5	0	0	0	0.075618	2	6224	6224;6230		104.01	2.4129	1	684720			17464	5355	14248	14270	19422;19423	19422					0.06591476554672226
IEDIPKEVL	9	Unmodified	_IEDIPKEVL_					0	0	0		ENSG00000147419|ENST00000356537|CCDC25	ENSG00000147419|ENST00000356537|CCDC25	ENSG00000147419|ENST00000356537|CCDC25	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.3042602539062	2	528.30279	1054.59103	-1.2291	-0.00064936	0.46731	0.00024688	-0.76183	-0.00040248	528.3027283949289	95.964	1.317	93.538	92.954	94.271	-2.4256					79	25	5	0	0	0	0.1149	1	8458	8458		93.143	2.7734	1	624490			17465	5355	14248	14270	19424	19424					0.06591476554672226
IEDKNEDKN	9	Unmodified	_IEDKNEDKN_					0	0	0			REV__ENSG00000154640|ENST00000348354|BTG3	REV__ENSG00000154640|ENST00000348354|BTG3	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.2796020507812	2	552.762017	1103.50948	1.0076	0.00055694	-1.4153	-0.00078234	-0.40776	-0.00022539	553.2628406223337	113.93	0.54288	113.81	113.52	114.06	-0.11777					16	10	2	0	0	0	0.027462	1	10794	10794		36.447	8.5645	1	9897.3	+		17466	20390	14249	14271	19425	19425					-0.0381325087521418
IEDKVKALL	9	Unmodified	_IEDKVKALL_					0	0	0		ENSG00000168918|ENST00000445964|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;nc|ENSG00000168918|Q92835-3|INPP5D	ENSG00000168918|ENST00000445964|INPP5D	ENSG00000168918|ENST00000445964|INPP5D	MULTI-MSMS	OvCa99_classI_Rep5	1	514.8225708007812	2	514.82115	1027.62775	0.75054	0.00038639	0.29085	0.00014974	1.0414	0.00053613	514.8211698415925	74.486	1.3494	74.486	74.214	75.563	0					86	33	4	0	0	0	0.014964	3	7349	7349;7378;7409		153.04	36.132	1	13194000			17467	6956	14250	14272	19426;19427;19428	19426					0.11503773171239118
IEDLGVHFL	9	Unmodified	_IEDLGVHFL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	OvCa99_classI_Rep5	1	521.7831420898438	2	521.782025	1041.5495	0.83147	0.00043385	1.0998	0.00057384	1.9313	0.0010077	521.7824537889809	119.25	0.46101	119.25	119.01	119.47	0					22	9	3	0	0	0	0.098892	1	13684	13684		97.473	31.043	1	259130			17468	3453	14251	14273	19429	19429					0.030383405859993218
IEDPNSDRL	9	Unmodified	_IEDPNSDRL_					0	0	0			REV__ENSG00000169925|ENST00000303407|BRD3	REV__ENSG00000169925|ENST00000303407|BRD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8115844726562	2	529.759278	1057.504	-0.096038	-5.0877E-05	4.0568	0.0021491	3.9608	0.0020983	529.7612373874755	69.126	1.064	69.126	68.692	69.756	0					56	25	4	0	0	0	0.027455	1	6518	6518		51.335	12.083	1	3127400	+		17469	21499	14252	14274	19430	19430					-0.022449296670401964
IEDPVRPEV	9	Unmodified	_IEDPVRPEV_					0	0	0		nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4;nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;ATP2B4|p.T807Kfs*11|1|0.14|ENSG00000058668|chr1:203720559-203720569|GCACAGATGTA/-|frameshift_variant;ATP2B1|p.N713Ifs*22|1|0.46|ENSG00000070961|chr12:89611302-89611302|T/-|frameshift_variant;ATP2B3|p.K912Qfs*72|1|0.12|ENSG00000067842|chrX:153559836-153559837|-/C|frameshift_variant;nc|ENSG00000070961|P20020-4|ATP2B1;ENSG00000157087|ENST00000360273|ATP2B2;nc|ENSG00000157087|Q01814-5|ATP2B2;ENSG00000067842|ENST00000263519|ATP2B3;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000157087|Q01814-8|ATP2B2;nc|ENSG00000067842|Q16720-4|ATP2B3;nc|ENSG00000157087|Q01814-2|ATP2B2;nc|ENSG00000157087|Q01814-6|ATP2B2;nc|ENSG00000157087|Q01814-3|ATP2B2;nc|ENSG00000070961|P20020-6|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000067842|Q16720-2|ATP2B3;nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000067842|Q16720-5|ATP2B3;nc|ENSG00000157087|Q01814-7|ATP2B2;nc|ENSG00000067842|Q16720-3|ATP2B3;nc|ENSG00000067842|Q16720-6|ATP2B3;nc|ENSG00000157087|Q01814-4|ATP2B2;nc|ENSG00000067842|Q16720-7|ATP2B3;nc|ENSG00000067842|Q16720-8|ATP2B3;nc|ENSG00000070961|P20020-1|ATP2B1	nc|ENSG00000058668|P23634-8|ATP2B4;ATP2B1|p.N713Ifs*22|1|0.46|ENSG00000070961|chr12:89611302-89611302|T/-|frameshift_variant	nc|ENSG00000058668|P23634-8|ATP2B4	MULTI-MSMS	OvCa9_classI_Rep3	3	527.2817993164062	2	527.282389	1052.55022	-1.3393	-0.0007062	1.2007	0.00063313	-0.13859	-7.3075E-05	527.2829934474272	76.746	1.8025	74.375	73.877	75.679	-2.3715					81	34	5	0	0	0	0.14445	2	3974	3969;3974		85.862	9.0152	1	550880			17470	14878;129	14253	14275	19431;19432	19432					0.026051352350577872
IEDPVRPEV	9	Unmodified	_IEDPVRPEV_					0	0	0		nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4;nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;ATP2B4|p.T807Kfs*11|1|0.14|ENSG00000058668|chr1:203720559-203720569|GCACAGATGTA/-|frameshift_variant;ATP2B1|p.N713Ifs*22|1|0.46|ENSG00000070961|chr12:89611302-89611302|T/-|frameshift_variant;ATP2B3|p.K912Qfs*72|1|0.12|ENSG00000067842|chrX:153559836-153559837|-/C|frameshift_variant;nc|ENSG00000070961|P20020-4|ATP2B1;ENSG00000157087|ENST00000360273|ATP2B2;nc|ENSG00000157087|Q01814-5|ATP2B2;ENSG00000067842|ENST00000263519|ATP2B3;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000157087|Q01814-8|ATP2B2;nc|ENSG00000067842|Q16720-4|ATP2B3;nc|ENSG00000157087|Q01814-2|ATP2B2;nc|ENSG00000157087|Q01814-6|ATP2B2;nc|ENSG00000157087|Q01814-3|ATP2B2;nc|ENSG00000070961|P20020-6|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000067842|Q16720-2|ATP2B3;nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000067842|Q16720-5|ATP2B3;nc|ENSG00000157087|Q01814-7|ATP2B2;nc|ENSG00000067842|Q16720-3|ATP2B3;nc|ENSG00000067842|Q16720-6|ATP2B3;nc|ENSG00000157087|Q01814-4|ATP2B2;nc|ENSG00000067842|Q16720-7|ATP2B3;nc|ENSG00000067842|Q16720-8|ATP2B3;nc|ENSG00000070961|P20020-1|ATP2B1	nc|ENSG00000058668|P23634-8|ATP2B4;ATP2B1|p.N713Ifs*22|1|0.46|ENSG00000070961|chr12:89611302-89611302|T/-|frameshift_variant	nc|ENSG00000058668|P23634-8|ATP2B4	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.2830200195312	2	527.282389	1052.55022	-0.93909	-0.00049517	0.52381	0.0002762	-0.41527	-0.00021897	527.2826200588424	77.489	0.92079	74.673	74.44	75.361	-2.8165					44	18	3	0	0	0	0.24899	1	6206	6206		68.846	7.8742	1	503880			17471	14878;129	14253	14275	19433	19433					0.026051352350577872
IEDPVRPEV	9	Unmodified	_IEDPVRPEV_					0	0	0		nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4;nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;ATP2B4|p.T807Kfs*11|1|0.14|ENSG00000058668|chr1:203720559-203720569|GCACAGATGTA/-|frameshift_variant;ATP2B1|p.N713Ifs*22|1|0.46|ENSG00000070961|chr12:89611302-89611302|T/-|frameshift_variant;ATP2B3|p.K912Qfs*72|1|0.12|ENSG00000067842|chrX:153559836-153559837|-/C|frameshift_variant;nc|ENSG00000070961|P20020-4|ATP2B1;ENSG00000157087|ENST00000360273|ATP2B2;nc|ENSG00000157087|Q01814-5|ATP2B2;ENSG00000067842|ENST00000263519|ATP2B3;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000157087|Q01814-8|ATP2B2;nc|ENSG00000067842|Q16720-4|ATP2B3;nc|ENSG00000157087|Q01814-2|ATP2B2;nc|ENSG00000157087|Q01814-6|ATP2B2;nc|ENSG00000157087|Q01814-3|ATP2B2;nc|ENSG00000070961|P20020-6|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000067842|Q16720-2|ATP2B3;nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000067842|Q16720-5|ATP2B3;nc|ENSG00000157087|Q01814-7|ATP2B2;nc|ENSG00000067842|Q16720-3|ATP2B3;nc|ENSG00000067842|Q16720-6|ATP2B3;nc|ENSG00000157087|Q01814-4|ATP2B2;nc|ENSG00000067842|Q16720-7|ATP2B3;nc|ENSG00000067842|Q16720-8|ATP2B3;nc|ENSG00000070961|P20020-1|ATP2B1	nc|ENSG00000058668|P23634-8|ATP2B4;ATP2B1|p.N713Ifs*22|1|0.46|ENSG00000070961|chr12:89611302-89611302|T/-|frameshift_variant	nc|ENSG00000058668|P23634-8|ATP2B4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	527.282389	1052.55022	-0.91911	-0.00048463	0.63346	0.00033401	-0.28565	-0.00015062	527.282676923153	76.658	1.2525	74.804	74.202	75.455	-1.854	0.065845	7.0144E-05	NaN	68.846	48	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134880			17472	14878;129	14253	14275							0.026051352350577872
IEDPYSPRI	9	Unmodified	_IEDPYSPRI_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1;LAMB1|p.Q868Lfs*19|1|0.04|ENSG00000091136|chr7:107959336-107959337|-/AAGCTATTTAAAATGACTAATCCCATTTGGATTA|frameshift_variant	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MULTI-MSMS	OvCa99_classI_Rep5	1	545.2830200195312	2	545.282389	1088.55022	1.0106	0.00055105	0.51962	0.00028334	1.5302	0.0008344	545.282613976431	83.271	0.84528	83.271	83.035	83.88	0					47	19	4	0	0	0	0.1243	1	8644	8644		90.601	0.23104	1	8974800			17473	1865	14254	14276	19434	19434					0.009491352350551097
IEDRTESAL	9	Unmodified	_IEDRTESAL_					0	0	0		ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	MULTI-MSMS	OvCa99_classI_Rep5	1	517.2630004882812	2	517.261653	1032.50875	-0.18539	-9.5893E-05	-0.29269	-0.0001514	-0.47807	-0.00024729	517.2613248470101	52.816	0.74057	52.816	52.39	53.131	0					30	16	2	0	0	0	0.10502	1	4162	4162		95.815	16.103	1	1897800			17474	2982	14255	14277	19435	19435					-0.00620045524260604
IEDSFPAPQ	9	Unmodified	_IEDSFPAPQ_					0	0	0			REV__ENSG00000161217|ENST00000431016|PCYT1A;REV__ENST00000473978.5_1_3:195974976-195997402:-|nuORF	REV__ENST00000473978.5_1_3:195974976-195997402:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	502.30029296875	2	502.24019	1002.46583	-0.60027	-0.00030148	-3.0671	-0.0015404	-3.6674	-0.0018419	502.7406101837305	114.45	0.64085	114.33	114.01	114.65	-0.11777					14	12	2	0	0	0	0.027462	1	10887	10887		51.335	15.717	1	8971	+		17475	20693;26337	14256	14278	19436	19436					-0.03530815581711977
IEDSVVLLD	9	Unmodified	_IEDSVVLLD_					0	0	0			REV__tr|A0A553SS33|A0A553SS33_NIACIAminotransferaseOS=NialliacirculansOX=1397GN=CEQ21_02270PE=3SV=1	REV__tr|A0A553SS33|A0A553SS33_NIACIAminotransferaseOS=NialliacirculansOX=1397GN=CEQ21_02270PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.2989196777344	2	501.771322	1001.52809	2.2342	0.0011211	1.2039	0.00060408	3.4381	0.0017252	501.77155879002913	84.852	0.37361	84.852	84.589	84.963	0					15	8	2	0	0	0	0.027462	1	8888	8888		29.15	6.1071	1	246020	+		17476	30797	14257	14279	19437	19437					0.027389107666408563
IEDTEIKPM	9	Unmodified	_IEDTEIKPM_					0	0	0		tr|A0A553SUL9|A0A553SUL9_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_01455PE=4SV=1	tr|A0A553SUL9|A0A553SUL9_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_01455PE=4SV=1	tr|A0A553SUL9|A0A553SUL9_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_01455PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.2694091796875	2	538.270632	1074.52671	-0.88344	-0.00047553	-2.4009	-0.0012923	-3.2843	-0.0017679	538.269152889749	74.835	1.1611	71.605	71.337	72.498	-3.2308					44	23	2	0	0	0	0.10363	1	5866	5866		96.19	2.995	1	743520			17477	34622	14258	14280	19438	19438					-0.007570465937760673
IEDVGMVKAM	10	Unmodified	_IEDVGMVKAM_					0	0	0			REV__tr|A0A553SQ96|A0A553SQ96_NIACILTAsynthasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_23535PE=3SV=1	REV__tr|A0A553SQ96|A0A553SQ96_NIACILTAsynthasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_23535PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	546.7800903320312	2	546.775028	1091.5355	-0.38661	-0.00021139	-0.24765	-0.00013541	-0.63426	-0.0003468	546.7746767468847	53.108	0.86553	53.108	52.653	53.519	0					37	19	3	0	0	0	0.32926	1	4192	4192		77.318	0.47095	1	2279200	+		17478	30616	14259	14281	19439	19439					-0.0066039622895459615
IEDVILRF	8	Unmodified	_IEDVILRF_					0	0	0		ENST00000498177.1_1_1:180805815-180843079:+|nuORF;nc|ENSG00000143324|Q9UBH6-2|XPR1;ENSG00000143324|ENST00000367590|XPR1	ENST00000498177.1_1_1:180805815-180843079:+|nuORF	ENST00000498177.1_1_1:180805815-180843079:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.7596130371094	2	502.792392	1003.57023	-0.91909	-0.00046211	-3.123	-0.0015702	-4.0421	-0.0020324	502.79092499219905	34.185	0.90398	34.185	33.728	34.632	0					26	18	2	0	0	0	0.028476	1	1572	1572		11.511	0	1	103110			17479	5035	14260	14282	19440	19440					0.06858930965665877
IEDYILSVE	9	Unmodified	_IEDYILSVE_					0	0	0		tr|A0A7D6VQT9|A0A7D6VQT9_9CLOTHemechaperoneHemWOS=ClostridiumintestinaleOX=36845GN=HZF06_16535PE=3SV=1	tr|A0A7D6VQT9|A0A7D6VQT9_9CLOTHemechaperoneHemWOS=ClostridiumintestinaleOX=36845GN=HZF06_16535PE=3SV=1	tr|A0A7D6VQT9|A0A7D6VQT9_9CLOTHemechaperoneHemWOS=ClostridiumintestinaleOX=36845GN=HZF06_16535PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.329833984375	2	540.776605	1079.53866	2.0571	0.0011124	-2.2576	-0.0012208	-0.20052	-0.00010843	540.7753606028225	85.622	0.61993	85.622	85.292	85.912	0					29	14	3	0	0	0	0.027462	1	8946	8946		23.042	0	1	731590			17480	34868	14261	14283	19441	19441					0.0020689342104560637
IEDYLKKV	8	Unmodified	_IEDYLKKV_					0	0	0		ENST00000583091.1_1_17:28395652-28396225:+|nuORF	ENST00000583091.1_1_17:28395652-28396225:+|nuORF	ENST00000583091.1_1_17:28395652-28396225:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.2704162597656	2	504.292225	1006.5699	-1.1466	-0.00057824	0.51936	0.00026191	-0.62729	-0.00031634	504.29226219675945	92.147	0.45799	89.604	89.466	89.924	-2.5425					12	8	2	0	0	0	0.028476	1	8019	8019		17.365	0.89182	1	21486			17481	14008	14262	14284	19442	19442					0.0668751124579785
IEDYVKNMT	9	Unmodified	_IEDYVKNMT_					0	0	0			REV__tr|A0A7D6VZX2|A0A7D6VZX2_9CLOTpeptidylprolylisomeraseOS=ClostridiumintestinaleOX=36845GN=HZF06_21750PE=4SV=1	REV__tr|A0A7D6VZX2|A0A7D6VZX2_9CLOTpeptidylprolylisomeraseOS=ClostridiumintestinaleOX=36845GN=HZF06_21750PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	556.76318359375	2	556.768257	1111.52196	-5.9004	-0.0032851	-2.1163	-0.0011783	-8.0167	-0.0044634	556.7673633073392	161.41	0.69244	159.78	159.49	160.18	-1.6239					22	16	2	0	0	0	0.56889	1	15951	15951		35.618	11.099	1	15506	+		17482	31848	14263	14285	19443	19443					-0.02933930736548973
IEDYVKNMT	9	Unmodified	_IEDYVKNMT_					0	0	0			REV__tr|A0A7D6VZX2|A0A7D6VZX2_9CLOTpeptidylprolylisomeraseOS=ClostridiumintestinaleOX=36845GN=HZF06_21750PE=4SV=1	REV__tr|A0A7D6VZX2|A0A7D6VZX2_9CLOTpeptidylprolylisomeraseOS=ClostridiumintestinaleOX=36845GN=HZF06_21750PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	556.768257	1111.52196	-7.2266	-0.0040235	0.14776	8.2268E-05	-7.0788	-0.0039413	556.7683422975091	160.93	0.71338	159.6	159.26	159.98	-1.3316	-0.094199	0.0016499	NaN	35.618	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20319	+		17483	31848	14263	14285							-0.02933930736548973
IEDYVKNMT	9	Unmodified	_IEDYVKNMT_					0	0	0			REV__tr|A0A7D6VZX2|A0A7D6VZX2_9CLOTpeptidylprolylisomeraseOS=ClostridiumintestinaleOX=36845GN=HZF06_21750PE=4SV=1	REV__tr|A0A7D6VZX2|A0A7D6VZX2_9CLOTpeptidylprolylisomeraseOS=ClostridiumintestinaleOX=36845GN=HZF06_21750PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	556.768257	1111.52196	-5.9004	-0.0032851	-2.1163	-0.0011783	-8.0167	-0.0044634	556.7673633073392	161.41	0.69244	159.78	159.49	160.18	-1.6239	0.094199	-0.00087121	NaN	35.618	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15506	+		17484	31848	14263	14285							-0.02933930736548973
IEEADGHTI	9	Unmodified	_IEEADGHTI_					0	0	0			REV__tr|A0A553SPV5|A0A553SPV5_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_08610PE=3SV=1	REV__tr|A0A553SPV5|A0A553SPV5_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_08610PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.2808837890625	2	492.735271	983.45599	-0.62334	-0.00030714	0.55094	0.00027147	-0.072403	-3.5676E-05	492.7353590276943	48.392	0.38133	48.392	48.204	48.585	0					14	8	3	0	0	0	0.027462	1	3574	3574		16.473	0.83134	1	219160	+		17485	30575	14264	14286	19444	19444					-0.0364000358707699
IEEAKTAFL	9	Unmodified	_IEEAKTAFL_					0	0	0		ENSG00000100292|ENST00000216117|HMOX1;ENST00000494998.1_1_22:35783088-35786015:+|nuORF	ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	MULTI-MSMS	OvCa99_classI_Rep5	1	511.2823486328125	2	511.281857	1020.54916	1.8414	0.00094146	0.201	0.00010277	2.0424	0.0010442	511.2817927370661	81.861	1.2928	81.861	81.613	82.906	0					77	30	4	0	0	0	0.043101	1	8443	8443		124.08	21.307	1	5101700			17486	2041	14265	14287	19445	19445					0.03970920866152028
IEEARDLLK	9	Unmodified	_IEEARDLLK_					0	0	0		tr|A0A7D6W1D1|A0A7D6W1D1_9CLOTPTSlactose/cellobiosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_03435PE=4SV=1	tr|A0A7D6W1D1|A0A7D6W1D1_9CLOTPTSlactose/cellobiosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_03435PE=4SV=1	tr|A0A7D6W1D1|A0A7D6W1D1_9CLOTPTSlactose/cellobiosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_03435PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	543.8126831054688	2	543.811313	1085.60807	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.919	1	69.919	69.419	70.419	0								0	0	0	0.03228	1	6677	6677		87.696	7.9839	1				17487	35406	14266	14288	19446	19446					0.06869397160448898
IEEDLSVEI	9	Unmodified	_IEEDLSVEI_					0	0	0		ENSG00000213066|ENST00000366847|CEP43;nc|ENSG00000272980|O95684-2|CEP43;nc|ENSG00000272980|O95684-3|CEP43;ENST00000609590.1_1_6:167417751-167458021:+|nuORF	ENSG00000213066|ENST00000366847|CEP43	ENSG00000213066|ENST00000366847|CEP43	MULTI-MSMS	OvCa99_classI_Rep5	1	523.76611328125	2	523.766237	1045.51792	1.0676	0.00055919	-1.752	-0.00091762	-0.68435	-0.00035844	523.7652678072772	149.25	0.48369	149.25	149.01	149.5	0					22	9	3	0	0	0	0.50149	1	17486	17486		42.396	5.237	1	144520			17488	9115	14267	14289	19447	19447					-0.0030169695860422507
IEEEFGHRQ	9	Unmodified	_IEEEFGHRQ_					0	0	0			REV__ENSG00000142621|ENST00000688493|FHAD1;REV__ENST00000483120.1_1_1:15684662-15690294:+|nuORF	REV__ENSG00000142621|ENST00000688493|FHAD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.306884765625	2	572.772719	1143.53089	-0.38367	-0.00021976	0.57701	0.00033049	0.19333	0.00011074	572.7727230685845	47.446	0.60305	47.446	47.165	47.768	0					27	13	4	0	0	0	0.027462	1	3446	3446		35.618	0	1	611730	+		17489	19796;26518	14268	14290	19448	19448					-0.035138210558670835
IEEFLGKREV	10	Unmodified	_IEEFLGKREV_					0	0	0		ENSG00000164080|ENST00000684192|RAD54L2;ENST00000461680.1_1_3:51673299-51697433:+|nuORF;ENST00000487093.5_1_3:51669772-51697433:+|nuORF	ENSG00000164080|ENST00000684192|RAD54L2	ENSG00000164080|ENST00000684192|RAD54L2	MULTI-MSMS	OvCa99_classI_Rep5	1	610.339599609375	2	610.337695	1218.66084	1.9917	0.0012156	-0.35563	-0.00021706	1.6361	0.00099855	610.3373457601166	102.99	0.87971	102.99	102.72	103.6	0					51	20	4	0	0	0	0.44431	1	11496	11496		62.107	0.41614	1	2846100			17490	6404	14269	14291	19449	19449					0.06025355223300721
IEEFPVPAL	9	Unmodified	_IEEFPVPAL_					0	0	0		ENST00000462672.1_1_10:131506162-131515894:+|nuORF;ENSG00000170430|ENST00000651593|MGMT	ENST00000462672.1_1_10:131506162-131515894:+|nuORF	ENST00000462672.1_1_10:131506162-131515894:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7786560058594	2	507.778951	1013.54335	-1.289	-0.00065455	1.1192	0.00056832	-0.16982	-8.6233E-05	507.7793644633824	139.7	1.13	139.48	139.01	140.14	-0.22696					52	22	3	0	0	0	0.59983	2	13959	13959;13973		31.955	1.4512	1	77462			17491	7102	14270	14292	19450;19451	19450					0.03711822354478045
IEEFPVPAL	9	Unmodified	_IEEFPVPAL_					0	0	0		ENST00000462672.1_1_10:131506162-131515894:+|nuORF;ENSG00000170430|ENST00000651593|MGMT	ENST00000462672.1_1_10:131506162-131515894:+|nuORF	ENST00000462672.1_1_10:131506162-131515894:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	507.7784729003906	2	507.778951	1013.54335	-2.4343	-0.0012361	2.2711	0.0011532	-0.16321	-8.2874E-05	507.7799378627202	140.33	1.3285	139.29	138.64	139.97	-1.0339					59	26	4	0	0	0	0.65476	2	11577	11557;11577		25.45	5.0992	1	82161			17492	7102	14270	14292	19452;19453	19453					0.03711822354478045
IEEFPVPAL	9	Unmodified	_IEEFPVPAL_					0	0	0		ENST00000462672.1_1_10:131506162-131515894:+|nuORF;ENSG00000170430|ENST00000651593|MGMT	ENST00000462672.1_1_10:131506162-131515894:+|nuORF	ENST00000462672.1_1_10:131506162-131515894:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7799072265625	2	507.778951	1013.54335	0.52406	0.00026611	-0.8294	-0.00042115	-0.30534	-0.00015505	507.77831370542475	140.73	0.77414	139.23	138.91	139.68	-1.4952					37	14	3	0	0	0	0.36502	3	13761	13737;13747;13761		55.504	7.8469	1	65421			17493	7102	14270	14292	19454;19455;19456	19456					0.03711822354478045
IEEGEPSPNTI	11	Unmodified	_IEEGEPSPNTI_					0	0	0			REV__ENST00000430014.1_1:144520944-144521145:-|nuORF	REV__ENST00000430014.1_1:144520944-144521145:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	593.2890625	2	593.285325	1184.5561	1.2421	0.00073689	3.7844	0.0022453	5.0265	0.0029821	593.2872399610096	83.372	1.3112	83.372	82.992	84.303	0					69	30	4	0	0	0	0.4646	1	8660	8660		56.434	1.6575	1	1649200	+		17494	25707	14271	14293	19457	19457					-0.02879811043931113
IEEGLGRNM	9	Unmodified	_IEEGLGRNM_					0	0	0		ENSG00000116688|ENST00000235329|MFN2;nc|ENSG00000116688|O95140-2|MFN2	ENSG00000116688|ENST00000235329|MFN2	ENSG00000116688|ENST00000235329|MFN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.8409423828125	2	509.752941	1017.49133	-0.3719	-0.00018957	1.4969	0.00076306	1.125	0.00057349	510.25562629166757	59.977	0.15987	59.977	59.879	60.039	0					5	3	2	0	0	0	0.027462	1	5212	5212		42.396	3.59	1	44304			17495	3197	14272	14294	19458	19458					-0.0167166433092234
IEEGNNLDATS	11	Unmodified	_IEEGNNLDATS_					0	0	0			REV__tr|A0A553SRK4|A0A553SRK4_NIACICd(2+)-exportingATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	REV__tr|A0A553SRK4|A0A553SRK4_NIACICd(2+)-exportingATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.7882080078125	2	581.764757	1161.51496	-0.38125	-0.0002218	0.82094	0.00047759	0.43968	0.00025579	581.7650689757539	69.009	0.32928	69.009	68.733	69.063	0					10	7	2	0	0	0	0.025418	1	6520	6520		32.751	8.2313	1	384360	+		17496	30739	14273	14295	19459	19459					-0.05933572083404215
IEEGSPGSGPE	11	Unmodified	_IEEGSPGSGPE_					0	0	0			REV__ENSG00000096968|ENST00000381652|JAK2	REV__ENSG00000096968|ENST00000381652|JAK2	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.8040771484375	2	529.735468	1057.45638	0.28867	0.00015292	1.8745	0.00099298	2.1631	0.0011459	529.7371102873836	105.3	0.57333	103.95	103.68	104.25	-1.3482					12	10	2	0	0	0	0.025597	1	7366	7366		51.193	3.2771	1	9701.2	+		17497	17310	14274	14296	19460	19460					-0.07004628657887224
IEEHVKAE	8	Unmodified	_IEEHVKAE_					0	0	0			REV__ENSG00000198077|ENST00000301146|CYP2A7;REV__ENSG00000197838|ENST00000330436|CYP2A13	REV__ENSG00000198077|ENST00000301146|CYP2A7	MULTI-SECPEP	OvCa9_classI_Rep3	3	478.2831726074219	2	477.748182	953.481811	-0.2094	-0.00010004	0.3968	0.00018957	0.1874	8.9532E-05	477.7480837901926	82.078	1.0953	79.782	79.434	80.53	-2.2963					27	21	2	0	0	0	0.028476	1	4619	4619		49.442	13.823	1	35671	+		17498	22983;22955	14275	14297	19461	19461					0.0032089065518903226
IEEHVKAE	8	Unmodified	_IEEHVKAE_					0	0	0			REV__ENSG00000198077|ENST00000301146|CYP2A7;REV__ENSG00000197838|ENST00000330436|CYP2A13	REV__ENSG00000198077|ENST00000301146|CYP2A7	MULTI-MATCH	OvCa99_classI_Rep5	1		2	477.748182	953.481811	2.0172	0.00096372	1.0673	0.0005099	3.0845	0.0014736	477.7484490877161	79.633	0.43303	79.633	79.474	79.907	0	-0.074535	0.00045748	NaN	49.442	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	303240	+		17499	22983;22955	14275	14297							0.0032089065518903226
IEEKGAVDAL	10	Unmodified	_IEEKGAVDAL_					0	0	0		ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	ENSG00000107625|ENST00000373585|DDX50	MULTI-MSMS	OvCa99_classI_Rep5	1	522.7814331054688	2	522.782222	1043.54989	-0.55164	-0.00028839	-1.6361	-0.00085531	-2.1877	-0.0011437	522.7810510043294	67.558	0.86344	67.558	67.173	68.037	0					49	20	4	0	0	0	0.03438	1	6324	6324		134.77	24.646	1	8853800			17500	2606	14276	14298	19462	19462					0.029857155152058112
IEEKGAVEAL	10	Unmodified	_IEEKGAVEAL_					0	0	0		DDX21|p.V637*|1|0.26|ENSG00000165732|chr10:68978848-68978848|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21	DDX21|p.V637*|1|0.26|ENSG00000165732|chr10:68978848-68978848|G/-|frameshift_variant	DDX21|p.V637*|1|0.26|ENSG00000165732|chr10:68978848-68978848|G/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	529.7911987304688	2	529.790047	1057.56554	-0.64578	-0.00034213	0.1042	5.5204E-05	-0.54158	-0.00028692	529.7900451764816	68.011	1.7504	68.011	67.683	69.433	0					85	42	4	0	0	0	0.042975	2	6385	6385;6413		131.62	13.606	1	18218000			17501	718	14277	14299	19463;19464	19463					0.03906002032226752
IEEKKEEM	8	Unmodified	_IEEKKEEM_					0	0	0			REV__ENSG00000137076|ENST00000314888|TLN1	REV__ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OvCa99_classI_Rep5	1	518.2549438476562	2	518.254982	1034.49541	-1.1848	-0.00061402	-3.5049	-0.0018165	-4.6897	-0.0024305	518.2530136231903	49.571	1.3072	49.571	49.287	50.594	0					78	29	4	0	0	0	0.35821	1	3702	3702		96.19	11.275	1	4207500	+		17502	19432	14278	14300	19465	19465					-0.0204561962787011
IEELSVDLIKE	11	Unmodified	_IEELSVDLIKE_					0	0	0		tr|A0A7D6VUB8|A0A7D6VUB8_9CLOTATP-dependentDNAhelicaseRecGC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01415PE=4SV=1	tr|A0A7D6VUB8|A0A7D6VUB8_9CLOTATP-dependentDNAhelicaseRecGC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01415PE=4SV=1	tr|A0A7D6VUB8|A0A7D6VUB8_9CLOTATP-dependentDNAhelicaseRecGC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01415PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	644.3499145507812	2	644.355751	1286.69695	-6.1065	-0.0039348	-3.1542	-0.0020324	-9.2607	-0.0059672	644.3535517231257	156.22	1.1461	155.15	154.82	155.96	-1.073					70	25	4	0	0	0	0.71789	1	13435	13435		23.523	1.5628	1	162170			17503	35176	14279	14301	19466	19466					0.06506767609448616
IEELTGLLNQ	10	Unmodified	_IEELTGLLNQ_					0	0	0		ENST00000532416.1_1_11:7647064-7652277:+|nuORF;PPFIBP2|p.G427Pfs*25|1|0.22|ENSG00000166387|chr11:7639774-7639789|GGGAAGCTTTCAGGAG/-|frameshift_variant;PPFIBP2|p.T424Lfs*33|1|0.26|ENSG00000166387|chr11:7639762-7639762|C/-|frameshift_variant;nc|ENSG00000166387|Q8ND30-3|PPFIBP2;nc|ENSG00000166387|Q8ND30-2|PPFIBP2;ENSG00000166387|ENST00000299492|PPFIBP2	ENST00000532416.1_1_11:7647064-7652277:+|nuORF	ENST00000532416.1_1_11:7647064-7652277:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	565.3096313476562	2	565.308603	1128.60265	-0.66072	-0.00037351	-0.72628	-0.00041058	-1.387	-0.00078408	565.3081769044711	97.601	2.4979	95.841	95.465	97.963	-1.7595					157	48	5	0	0	0	0.10076	2	6463	6463;6497		113.41	8.665	1	5088000			17504	6671	14280	14302	19467;19468	19467					0.04349673578008151
IEELTKVVPRE	11	Unmodified	_IEELTKVVPRE_					0	0	0		tr|A0A7D7A1K0|A0A7D7A1K0_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04515PE=4SV=1	tr|A0A7D7A1K0|A0A7D7A1K0_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04515PE=4SV=1	tr|A0A7D7A1K0|A0A7D7A1K0_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04515PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	437.2610168457031	3	438.253882	1311.73982	-0.207	-9.0719E-05	-2.4048	-0.0010539	-2.6118	-0.0011446	438.2527313315321	49.798	1.2399	47.038	46.523	47.763	-2.7603					58	24	3	0	0	0	0.025319	1	3237	3237		39.873	0	1	144800			17505	36038	14281	14303	19469	19469					0.09641582457584263
IEEQEKML	8	Oxidation (M)	_IEEQEKM(Oxidation (M))L_		IEEQEKM(1)L		IEEQEKM(130)L	0	0	1		ENSG00000103540|ENST00000694978|CCP110;nc|ENSG00000103540|O43303|CCP110	ENSG00000103540|ENST00000694978|CCP110	ENSG00000103540|ENST00000694978|CCP110	MULTI-MSMS	OvCa99_classI_Rep5	1	518.2554931640625	2	518.254982	1034.49541	-1.1848	-0.00061402	-3.5049	-0.0018165	-4.6897	-0.0024305	518.2530136231903	49.571	1.3072	49.571	49.287	50.594	0					78	29	4	0	0	0	0.13946	1	3724	3724		134.81	8.9967	1	4207500			17506	2327	14282	14304	19470	19470		76			-0.0204561962787011
IEEQLISN	8	Unmodified	_IEEQLISN_					0	0	0			REV__POTEC|p.M528I|1|0.11|ENSG00000183206|chr18:14511943-14511943|C/T|missense_variant	REV__POTEC|p.M528I|1|0.11|ENSG00000183206|chr18:14511943-14511943|C/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	473.2828063964844	2	473.248015	944.481476	0.37029	0.00017524	-4.4803	-0.0021203	-4.11	-0.001945	473.24519050923885	86.896	0.1564	85.464	85.386	85.543	-1.4311					4	2	2	0	0	0	0.028476	1	7558	7558		39.253	3.6345	1	7097.7	+		17507	29312	14283	14305	19471	19471					0.007014709353370563
IEERLPLI	8	Unmodified	_IEERLPLI_					0	0	0			REV__tr|A0A7D6VQD8|A0A7D6VQD8_9CLOTAminotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14910PE=3SV=1	REV__tr|A0A7D6VQD8|A0A7D6VQD8_9CLOTAminotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14910PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	491.80023193359375	2	491.800217	981.585882	0.45767	0.00022508	-0.86132	-0.0004236	-0.40365	-0.00019852	491.7997614216502	106.26	3.1068	105.82	105.5	108.61	-0.43642					130	62	3	0	0	0	0.55617	2	9927	9903;9927		71.877	0	1	1827600	+		17508	31317	14284	14306	19472;19473	19473					0.09435217482723601
IEERLPLI	8	Unmodified	_IEERLPLI_					0	0	0			REV__tr|A0A7D6VQD8|A0A7D6VQD8_9CLOTAminotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14910PE=3SV=1	REV__tr|A0A7D6VQD8|A0A7D6VQD8_9CLOTAminotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14910PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	491.8010559082031	2	491.800217	981.585882	0.015139	7.4454E-06	-0.71075	-0.00034955	-0.69561	-0.0003421	491.79978875845774	107.24	3.4509	105.98	105.67	109.12	-1.267					161	66	5	0	0	0	0.4531	5	7612	7606;7612;7618;7624;7642		82.241	0	1	2343100	+		17509	31317	14284	14306	19474;19475;19476;19477;19478	19475					0.09435217482723601
IEESGEHII	9	Unmodified	_IEESGEHII_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OvCa99_classI_Rep5	1	513.7603759765625	2	513.758746	1025.50294	-0.66464	-0.00034147	0.084734	4.3533E-05	-0.57991	-0.00029793	513.7586906436394	67.972	1.1758	67.972	67.683	68.858	0					70	28	3	0	0	0	0.055688	2	6377	6377;6406		115.46	9.0438	1	12033000			17510	6826	14285	14307	19479;19480	19479					-0.00879144035934587
IEESGEHII	9	Unmodified	_IEESGEHII_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	513.758746	1025.50294	-1.0645	-0.00054688	3.4205	0.0017573	2.356	0.0012104	514.2619424564839	71.42	0.9744	67.964	67.486	68.46	-3.4563	-0.0037861	0.0032443	NaN	115.46	34	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51608			17511	6826	14285	14307							-0.00879144035934587
IEESHSLGGL	10	Unmodified	_IEESHSLGGL_					0	0	0			REV__nc|ENSG00000143569|Q14157-4|UBAP2L	REV__nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3171997070312	2	521.264196	1040.51384	-0.53698	-0.00027991	-2.3943	-0.0012481	-2.9313	-0.001528	521.2627863586416	58.353	0.44803	54.961	54.752	55.2	-3.392					13	8	3	0	0	0	0.026665	1	3831	3831		26.693	0	1	16765	+		17512	19853	14286	14308	19481	19481					-0.004797416616383998
IEETCHFKP	9	Unmodified	_IEETCHFKP_					0	0	0			REV__ENST00000575153.5_1_17:5347527-5364435:-|nuORF	REV__ENST00000575153.5_1_17:5347527-5364435:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.8365478515625	2	552.263142	1102.51173	0.35694	0.00019713	3.2413	0.00179	3.5982	0.0019872	552.2644908707854	109.73	0.57999	108.13	107.8	108.38	-1.6011					12	10	2	0	0	0	0.027455	1	10095	10095		42.396	20.436	1	10433	+		17513	16296	14287	14309	19482	19482					-0.035424936711251576
IEETYKKF	8	Unmodified	_IEETYKKF_					0	0	0		ENSG00000125816|ENST00000351817|NKX2-4	ENSG00000125816|ENST00000351817|NKX2-4	ENSG00000125816|ENST00000351817|NKX2-4	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.7822875976562	2	529.281857	1056.54916	-1.4178	-0.00075042	0.72983	0.00038629	-0.68797	-0.00036413	529.282048760086	99.948	0.99124	99.118	98.865	99.856	-0.83051					30	19	2	0	0	0	0.028476	1	9211	9211		88.643	6.3378	1	67069			17514	3738	14288	14310	19483	19483					0.02314920866160719
IEETYKKF	8	Unmodified	_IEETYKKF_					0	0	0		ENSG00000125816|ENST00000351817|NKX2-4	ENSG00000125816|ENST00000351817|NKX2-4	ENSG00000125816|ENST00000351817|NKX2-4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	529.281857	1056.54916	-1.0126	-0.00053596	-0.23136	-0.00012245	-1.244	-0.00065841	529.2816252845523	100.74	0.97296	99.136	98.946	99.919	-1.6053	0.0091448	-0.00049094	NaN	88.643	23	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56914			17515	3738	14288	14310							0.02314920866160719
IEEYLTFLD	9	Unmodified	_IEEYLTFLD_					0	0	0		ENST00000489885.1_1_17:7094029-7095081:-|nuORF	ENST00000489885.1_1_17:7094029-7095081:-|nuORF	ENST00000489885.1_1_17:7094029-7095081:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.7921752929688	2	571.78443	1141.55431	0.69149	0.00039538	-4.3023	-0.00246	-3.6108	-0.0020646	571.781726879106	151.6	0.38908	151.6	151.35	151.74	0					10	7	2	0	0	0	0.027462	1	17734	17734		16.473	0	1	38665			17516	12687	14289	14311	19484	19484					-0.010808200619067065
IEFAHKVI	8	Unmodified	_IEFAHKVI_					0	0	0			REV__ENST00000599232.1_1_19:58904459-58904744:+|nuORF	REV__ENST00000599232.1_1_19:58904459-58904744:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.7803955078125	2	478.781828	955.549102	-0.59252	-0.00028369	-4.3994	-0.0021064	-4.992	-0.0023901	478.7796788069989	55.63	1.4702	52.335	51.751	53.221	-3.2944					74	28	5	0	0	0	0.60331	2	3507	3507;3529		63.306	5.495	1	1434900	+		17517	17112	14290	14312	19485;19486	19485					0.06954965656814238
IEFAHKVI	8	Unmodified	_IEFAHKVI_					0	0	0			REV__ENST00000599232.1_1_19:58904459-58904744:+|nuORF	REV__ENST00000599232.1_1_19:58904459-58904744:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	478.781828	955.549102	-1.1921	-0.00057075	-2.9121	-0.0013942	-4.1042	-0.001965	478.7802098071331	55.398	1.2424	52.584	52.072	53.314	-2.8139	0.12428	0.00092235	NaN	63.306	66	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247440	+		17518	17112	14290	14312							0.06954965656814238
IEFDIAREEK	10	Unmodified	_IEFDIAREEK_					0	0	0			REV__tr|A0A553SJ54|A0A553SJ54_NIACIRibonucleaseROS=NialliacirculansOX=1397GN=rnrPE=3SV=1	REV__tr|A0A553SJ54|A0A553SJ54_NIACIRibonucleaseROS=NialliacirculansOX=1397GN=rnrPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	417.9065856933594	3	417.218949	1248.63502	-0.39514	-0.00016486	2.0444	0.00085296	1.6492	0.0006881	417.2196726639626	51.757	0.65235	48.584	48.174	48.826	-3.1734					19	12	2	0	0	0	0.026666	1	3032	3032		36.318	7.9339	1	14406	+		17519	29966	14291	14313	19487	19487					0.020644609809778558
IEFDPSKPFSL	11	Unmodified	_IEFDPSKPFSL_					0	0	0		ENSG00000175595|ENST00000311895|ERCC4	ENSG00000175595|ENST00000311895|ERCC4	ENSG00000175595|ENST00000311895|ERCC4	MULTI-MSMS	OvCa9_classI_Rep2	2	640.3316650390625	2	640.332079	1278.6496	0.29753	0.00019052	-0.29921	-0.00019159	-0.0016733	-1.0715E-06	640.3317251954874	128.48	0.94072	128.25	127.98	128.92	-0.22696					38	18	3	0	0	0	0.41656	1	12594	12594		59.931	16.28	1	57435			17520	7555	14292	14314	19488	19488					0.021425331291538896
IEFDPSKPFSL	11	Unmodified	_IEFDPSKPFSL_					0	0	0		ENSG00000175595|ENST00000311895|ERCC4	ENSG00000175595|ENST00000311895|ERCC4	ENSG00000175595|ENST00000311895|ERCC4	MULTI-MSMS	OvCa9_classI_Rep4_	4	640.3314208984375	2	640.332079	1278.6496	1.9957	0.0012779	-1.9602	-0.0012552	0.035472	2.2714E-05	640.3305264059508	129.57	1.676	128.11	127.84	129.52	-1.4565					49	33	3	0	0	0	0.54114	1	12409	12409		50.034	3.5767	1	60793			17521	7555	14292	14314	19489	19489					0.021425331291538896
IEFDPSKPFSL	11	Unmodified	_IEFDPSKPFSL_					0	0	0		ENSG00000175595|ENST00000311895|ERCC4	ENSG00000175595|ENST00000311895|ERCC4	ENSG00000175595|ENST00000311895|ERCC4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	640.332079	1278.6496	0.52606	0.00033685	-0.8701	-0.00055715	-0.34404	-0.0002203	640.3314388989968	129.36	1.5339	128.25	127.94	129.48	-1.1121	0.041811	-2.0886E-05	NaN	59.931	37	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46688			17522	7555	14292	14314							0.021425331291538896
IEFETNILI	9	Unmodified	_IEFETNILI_					0	0	0			REV__tr|A0A553SQI2|A0A553SQI2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07740PE=4SV=1	REV__tr|A0A553SQI2|A0A553SQI2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07740PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.3385620117188	2	546.30279	1090.59103	-2.6703	-0.0014588	4.1069	0.0022436	1.4366	0.00078479	546.3072340945694	126.08	0.4389	124.67	124.39	124.83	-1.4143					9	8	2	0	0	0	0.027426	1	11961	11961		76.774	0	1	7969.3	+		17523	30632	14293	14315	19490	19490					0.04935476554669549
IEFFGPIVEVL	11	Unmodified	_IEFFGPIVEVL_					0	0	0		tr|A0A553SPU1|A0A553SPU1_NIACIGlycosyltransferasefamily2proteinOS=NialliacirculansOX=1397GN=CEQ21_09850PE=4SV=1	tr|A0A553SPU1|A0A553SPU1_NIACIGlycosyltransferasefamily2proteinOS=NialliacirculansOX=1397GN=CEQ21_09850PE=4SV=1	tr|A0A553SPU1|A0A553SPU1_NIACIGlycosyltransferasefamily2proteinOS=NialliacirculansOX=1397GN=CEQ21_09850PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	422.23956298828125	3	421.572552	1261.69583	-0.09713	-4.0947E-05	1.4062	0.00059283	1.3091	0.00055188	421.5731645818152	48.653	0.57348	48.653	48.412	48.986	0					22	12	2	0	0	0	0.025612	1	3558	3558		29.551	15.465	1	315660			17524	34085	14294	14316	19491	19491					0.07544598031245187
IEFIDKQLF	9	Unmodified	_IEFIDKQLF_					0	0	0			REV__ZNF565|p.H253Tfs*15|1|0.05|ENSG00000196357|chr19:36183329-36183330|-/TCGTGTGAGCTGTGCGTGCTGT|frameshift_variant	REV__ZNF565|p.H253Tfs*15|1|0.05|ENSG00000196357|chr19:36183329-36183330|-/TCGTGTGAGCTGTGCGTGCTGT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.8220825195312	2	576.818607	1151.62266	1.2059	0.00069559	-1.1115	-0.00064114	0.094397	5.445E-05	576.8178653059668	112.03	0.50832	112.03	111.79	112.3	0					24	10	3	0	0	0	0.027232	1	12770	12770		66.429	0	1	323760	+		17525	22815	14295	14317	19492	19492					0.05291469308599517
IEFILLPK	8	Unmodified	_IEFILLPK_					0	0	0			REV__nc|ENSG00000005175|Q9H6T3-3|RPAP3	REV__nc|ENSG00000005175|Q9H6T3-3|RPAP3	MULTI-MSMS	OvCa9_classI_Rep2	2	486.8097229003906	2	486.810054	971.605554	1.2422	0.00060471	-1.0668	-0.00051931	0.17542	8.5394E-05	486.80935668338475	129.16	1.5814	128.93	128.62	130.21	-0.22696					73	31	4	0	0	0	0.67745	1	12707	12707		47.916	5.5195	1	189380	+		17526	16394	14296	14318	19493	19493					0.11861593493472355
IEFKETQAL	9	Unmodified	_IEFKETQAL_					0	0	0		ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000485101.5_1_3:186502728-186502902:+|nuORF;ENST00000465032.5_1_3:186501384-186502902:+|nuORF;ENST00000465267.5_1_3:186501384-186502902:+|nuORF	ENSG00000156976|ENST00000323963|EIF4A2	ENSG00000156976|ENST00000323963|EIF4A2	MULTI-MSMS	OvCa99_classI_Rep5	1	539.794921875	2	539.792589	1077.57063	1.0297	0.00055584	0.44538	0.00024041	1.4751	0.00079626	539.7930132888378	83.375	0.72266	83.375	83.078	83.801	0					34	16	4	0	0	0	0.1149	3	8688	8656;8688;8700		93.143	13.431	1	10162000			17527	5867	14297	14319	19494;19495;19496	19495					0.03494305894855643
IEFKYRDF	8	Unmodified	_IEFKYRDF_					0	0	0			REV__ENST00000507765.1_1_4:6290695-6304192:+|nuORF	REV__ENST00000507765.1_1_4:6290695-6304192:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	559.2876586914062	2	559.287474	1116.5604	1.8335	0.0010255	-2.3972	-0.0013407	-0.56374	-0.00031529	559.285935160322	57.961	2.4261	54.834	53.92	56.346	-3.1264					105	62	3	0	0	0	0.74229	1	1753	1753		30.504	1.3336	1	45402	+		17528	17933	14298	14320	19497	19497					0.0067774296028346726
IEFLAITIR	9	Unmodified	_IEFLAITIR_					0	0	0			REV__SPZ1|p.L341Tfs*20|1|0.05|ENSG00000164299|chr5:80321234-80321235|-/AACTGGAGTGC|frameshift_variant	REV__SPZ1|p.L341Tfs*20|1|0.05|ENSG00000164299|chr5:80321234-80321235|-/AACTGGAGTGC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	538.325927734375	2	538.329142	1074.64373	-5.5921	-0.0030104	1.7538	0.0009441	-3.8384	-0.0020663	538.3299819955096	158.56	1.0599	158.33	158.09	159.15	-0.22697					66	21	5	0	0	0	0.6653	1	16137	16137		24.203	1.1603	1	327100	+		17529	20969	14299	14321	19498	19498					0.1093947940810267
IEFLKNSKK	9	Unmodified	_IEFLKNSKK_					0	0	0			REV__tr|A0A7D7A1G2|A0A7D7A1G2_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12370PE=4SV=1	REV__tr|A0A7D7A1G2|A0A7D7A1G2_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12370PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	553.830322265625	2	553.832049	1105.64954	-2.2198	-0.0012294	-1.4062	-0.0007788	-3.626	-0.0020082	553.8311075714116	139.08	3.9663	138.02	135.98	139.95	-1.0595					202	80	4	0	0	0	0.63422	1	11486	11486		27.882	1.1893	1	74733	+		17530	32490	14300	14322	19499	19499					0.10094577919812764
IEFLSWTEPF	10	Unmodified	_IEFLSWTEPF_					0	0	0		CASR|p.V705Ifs*7|1|0.05|ENSG00000036828|chr3:122284065-122284066|-/CATAGAATCCCAA|frameshift_variant;ENSG00000036828|ENST00000639785|CASR;nc|ENSG00000036828|P41180-2|CASR	CASR|p.V705Ifs*7|1|0.05|ENSG00000036828|chr3:122284065-122284066|-/CATAGAATCCCAA|frameshift_variant	CASR|p.V705Ifs*7|1|0.05|ENSG00000036828|chr3:122284065-122284066|-/CATAGAATCCCAA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	635.3222045898438	2	634.813522	1267.61249	1.3518	0.00085811	-2.3298	-0.001479	-0.97806	-0.00062088	634.8120104546088	142.69	0.54454	142.69	142.39	142.93	0					25	10	3	0	0	0	0.026849	1	16692	16692		40.778	14.085	1	199610			17531	186	14301	14323	19500	19500					-0.010611384166168136
IEFLTKKPN	9	Unmodified	_IEFLTKKPN_					0	0	0			REV__tr|A0A7D6ZJP4|A0A7D6ZJP4_9CLOTCation-translocatingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09190PE=4SV=1	REV__tr|A0A7D6ZJP4|A0A7D6ZJP4_9CLOTCation-translocatingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09190PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3160400390625	2	545.318774	1088.623	-2.8527	-0.0015556	-0.96726	-0.00052747	-3.8199	-0.0020831	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.64427	1	11784	11784		26.693	1.1189	1	337600	+		17532	32087	14302	14324	19501	19501					0.08222889028479585
IEFRRKNG	8	Unmodified	_IEFRRKNG_					0	0	0		tr|A0A7D6ZKA6|A0A7D6ZKA6_9CLOTUvrD-helicasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04410PE=4SV=1	tr|A0A7D6ZKA6|A0A7D6ZKA6_9CLOTUvrD-helicasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04410PE=4SV=1	tr|A0A7D6ZKA6|A0A7D6ZKA6_9CLOTUvrD-helicasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04410PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.25689697265625	2	510.290882	1018.56721	-0.50985	-0.00026017	2.853	0.0014558	2.3431	0.0011957	510.2918688034924	94.255	0.73204	91.787	91.478	92.21	-2.4685					25	14	2	0	0	0	0.028476	1	8250	8250		30.504	0	1	56305			17533	35660	14303	14325	19502	19502					0.05867100631530775
IEGAKINNTD	10	Unmodified	_IEGAKINNTD_					0	0	0			REV__tr|A0A553SST2|A0A553SST2_NIACIYmf39OS=NialliacirculansOX=1397GN=CEQ21_03660PE=4SV=1	REV__tr|A0A553SST2|A0A553SST2_NIACIYmf39OS=NialliacirculansOX=1397GN=CEQ21_03660PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.2862548828125	2	537.774928	1073.5353	-0.98745	-0.00053103	-1.9611	-0.0010546	-2.9486	-0.0015857	537.7743005193411	76.536	0.60961	73.597	73.175	73.785	-2.9389					22	12	2	0	0	0	0.026994	1	6034	6034		25.574	0	1	41020	+		17534	30877	14304	14326	19503	19503					0.001476433670404731
IEGEAKALLI	10	Unmodified	_IEGEAKALLI_					0	0	0			REV__ENSG00000108846|ENST00000285238|ABCC3	REV__ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	OvCa99_classI_Rep5	1	528.81640625	2	528.818607	1055.62266	1.1409	0.00060331	-3.3114	-0.0017512	-2.1706	-0.0011478	528.8166006772927	144.45	0.58365	144.45	144.16	144.74	0					25	11	4	0	0	0	0.40664	1	16881	16881		67.494	5.3863	1	465510	+		17535	17908	14305	14327	19504	19504					0.09707469308614236
IEGFTEEL	8	Unmodified	_IEGFTEEL_					0	0	0		tr|A0A553SMK5|A0A553SMK5_NIACIBranched-chainaminoacidaminotransferaseOS=NialliacirculansOX=1397GN=CEQ21_22785PE=4SV=1	tr|A0A553SMK5|A0A553SMK5_NIACIBranched-chainaminoacidaminotransferaseOS=NialliacirculansOX=1397GN=CEQ21_22785PE=4SV=1	tr|A0A553SMK5|A0A553SMK5_NIACIBranched-chainaminoacidaminotransferaseOS=NialliacirculansOX=1397GN=CEQ21_22785PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	469.7707214355469	2	469.22929	936.444028	0.57795	0.00027119	0.71539	0.00033568	1.2933	0.00060687	469.22947703360927	61.245	2.2752	57.815	57.395	59.67	-3.43					89	46	3	0	0	0	0.028476	1	4228	4228		47.916	9.1095	1	261900			17536	33843	14306	14328	19505	19505					-0.026736203302675676
IEGFTEEL	8	Unmodified	_IEGFTEEL_					0	0	0		tr|A0A553SMK5|A0A553SMK5_NIACIBranched-chainaminoacidaminotransferaseOS=NialliacirculansOX=1397GN=CEQ21_22785PE=4SV=1	tr|A0A553SMK5|A0A553SMK5_NIACIBranched-chainaminoacidaminotransferaseOS=NialliacirculansOX=1397GN=CEQ21_22785PE=4SV=1	tr|A0A553SMK5|A0A553SMK5_NIACIBranched-chainaminoacidaminotransferaseOS=NialliacirculansOX=1397GN=CEQ21_22785PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	469.22929	936.444028	-0.9369	-0.00043962	2.5542	0.0011985	1.6173	0.00075888	469.23026041266826	60.467	2.2422	57.696	57.082	59.324	-2.7702	-0.059261	0.00079386	NaN	38.806	83	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125570			17537	33843	14306	14328							-0.026736203302675676
IEGGICKPLI	10	Unmodified	_IEGGICKPLI_					0	0	0			REV__ENSG00000058063|ENST00000323116|ATP11B	REV__ENSG00000058063|ENST00000323116|ATP11B	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.7830200195312	2	521.801903	1041.58925	1.5121	0.00078904	-2.2888	-0.0011943	-0.77669	-0.00040528	521.800597818241	107.34	1.1813	107.34	107.02	108.2	0					41	27	2	0	0	0	0.026802	1	12187	12187		42.396	3.59	1	6862600	+		17538	16724	14307	14329	19506	19506					0.0701214426505885
IEGGTLGRSV	10	Unmodified	_IEGGTLGRSV_					0	0	0			REV__ENST00000488068.5_1_7:143088552-143095662:-|nuORF	REV__ENST00000488068.5_1_7:143088552-143095662:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	494.7761535644531	2	494.774731	987.534909	1.6697	0.00082614	-0.12673	-6.2702E-05	1.543	0.00076344	494.77462039441735	77.779	0.71138	77.779	77.422	78.134	0					33	16	3	0	0	0	0.47142	1	7864	7864		58.23	0.41864	1	4209000	+		17539	20033	14308	14330	19507	19507					0.04064268437866758
IEGHNSFLI	9	Unmodified	_IEGHNSFLI_					0	0	0			REV__ENST00000470621.1_1_2:170665037-170666957:+|nuORF	REV__ENST00000470621.1_1_2:170665037-170666957:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.313232421875	2	515.271824	1028.5291	-0.47443	-0.00024446	2.1491	0.0011074	1.6746	0.00086289	515.7748690555654	101.98	0.26031	99.783	99.624	99.884	-2.1994					6	4	2	0	0	0	0.027446	1	9180	9180		51.193	5.2407	1	10606	+		17540	19536	14309	14331	19508	19508					0.01597169926208153
IEGHNSFLI	9	Unmodified	_IEGHNSFLI_					0	0	0			REV__ENST00000470621.1_1_2:170665037-170666957:+|nuORF	REV__ENST00000470621.1_1_2:170665037-170666957:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	515.271824	1028.5291	-0.50448	-0.00025995	3.1622	0.0016294	2.6577	0.0013694	515.2732602610622	101.31	0.42066	99.702	99.498	99.919	-1.6053	-0.040242	0.00038621	NaN	51.193	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9023.8	+		17541	19536	14309	14331							0.01597169926208153
IEGHWNRFITL	11	Unmodified	_IEGHWNRFITL_					0	0	0		chr10:52974800-52975649|140|10.67|0.07|7.18|-|1|LINC02672,None|2	chr10:52974800-52975649|140|10.67|0.07|7.18|-|1|LINC02672,None|2	chr10:52974800-52975649|140|10.67|0.07|7.18|-|1|LINC02672,None|2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.2458801269531	3	462.582333	1384.72517	-0.41949	-0.00019405	3.7432	0.0017316	3.3237	0.0015375	462.5841835756822	64.224	0.58655	60.749	60.442	61.028	-3.475					17	11	2	0	0	0	0.026068	1	4521	4521		11.932	0	1	37577			17542	274	14310	14332	19509	19509					0.04819555100061734
IEGIDKSKAFN	11	Unmodified	_IEGIDKSKAFN_					0	0	0			REV__ENST00000261333.10_1_18:32838201-32838291:+|nuORF	REV__ENST00000261333.10_1_18:32838201-32838291:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	610.6787719726562	2	611.327328	1220.6401	2.3085	0.0014113	-0.24313	-0.00014863	2.0654	0.0012626	611.3269989139275	82.291	0.42058	82.291	82.101	82.522	0					21	9	3	0	0	0	0.025457	1	8519	8519		16.717	0	1	406990	+		17543	23944	14311	14333	19510	19510					0.03860764843625475
IEGIVEEIPL	10	Unmodified	_IEGIVEEIPL_					0	0	0			REV__tr|A0A553SP55|A0A553SP55_NIACITranscriptionfactorFapROS=NialliacirculansOX=1397GN=fapRPE=3SV=1	REV__tr|A0A553SP55|A0A553SP55_NIACITranscriptionfactorFapROS=NialliacirculansOX=1397GN=fapRPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.7736206054688	2	556.315897	1110.61724	0.93701	0.00052127	3.4478	0.0019181	4.3848	0.0024394	556.3179152618007	97.987	0.55553	95.608	95.267	95.822	-2.3786					18	10	2	0	0	0	0.02661	1	8664	8664		49.442	10.189	1	69450	+		17544	30495	14312	14334	19511	19511					0.06635745726134701
IEGKIQVLEE	10	Unmodified	_IEGKIQVLEE_					0	0	0			REV__ENSG00000117724|ENST00000366955|CENPF	REV__ENSG00000117724|ENST00000366955|CENPF	MULTI-MSMS	OvCa9_classI_Rep2	2	579.3226928710938	2	579.324254	1156.63395	-1.5587	-0.00090299	-0.92171	-0.00053397	-2.4804	-0.001437	579.3236686827205	50.2	1.538	47.406	47.033	48.571	-2.794					84	30	4	0	0	0	0.55109	2	3213	3213;3245		47.96	5.0953	1	611210	+		17545	18367	14313	14335	19512;19513	19512					0.061902466120727695
IEGKIQVLEE	10	Unmodified	_IEGKIQVLEE_					0	0	0			REV__ENSG00000117724|ENST00000366955|CENPF	REV__ENSG00000117724|ENST00000366955|CENPF	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.3226928710938	2	579.324254	1156.63395	-1.8864	-0.0010928	-0.92101	-0.00053357	-2.8074	-0.0016264	579.3237390390577	50.507	2.0874	47.366	46.922	49.01	-3.1416					110	40	5	0	0	0	0.26424	2	2911	2911;2923		85.161	10.118	1	2222100	+		17546	18367	14313	14335	19514;19515	19514					0.061902466120727695
IEGKYIALDV	10	Unmodified	_IEGKYIALDV_					0	0	0			REV__tr|A0A553SIQ0|A0A553SIQ0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_15285PE=4SV=1	REV__tr|A0A553SIQ0|A0A553SIQ0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_15285PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	561.32421875	2	560.816064	1119.61758	2.0963	0.0011757	0.76637	0.00042979	2.8627	0.0016055	560.8158867229721	119.78	0.5947	119.78	119.5	120.09	0					23	14	2	0	0	0	0.48398	1	13771	13771		56.434	3.4971	1	410390	+		17547	29916	14314	14336	19516	19516					0.0625516544596394
IEGLIEREYL	10	Unmodified	_IEGLIEREYL_					0	0	0		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;nc|ENSG00000036257|Q13618-3|CUL3;ENST00000497715.1_1_2:225338964-225343150:-|nuORF	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	OvCa99_classI_Rep5	1	617.8413696289062	2	617.837528	1233.6605	-1.2673	-0.00078301	0.0063271	3.9091E-06	-1.261	-0.0007791	617.8373971774224	104.47	1.1186	104.47	104.19	105.31	0					49	25	3	0	0	0	0.42214	1	11706	11706		53.089	1.8963	1	1576900			17548	1087	14315	14337	19517	19517					0.05301935503439381
IEGLVKELL	9	Unmodified	_IEGLVKELL_					0	0	0		nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9	nc|ENSG00000135506|Q13438-4|OS9	nc|ENSG00000135506|Q13438-4|OS9	MULTI-MSMS	OvCa9_classI_Rep3	3	507.3156433105469	2	507.3157	1012.61685	-0.96298	-0.00048854	0.6153	0.00031215	-0.34769	-0.00017639	507.3158623915197	117.79	1.8845	116.76	116.44	118.32	-1.0324					99	37	4	0	0	0	0.14998	1	8866	8866		84.916	5.2029	1	576140			17549	4384	14316	14338	19518	19518					0.11104370796954299
IEGNEAKKIY	10	Unmodified	_IEGNEAKKIY_					0	0	0		tr|A0A553SMA1|A0A553SMA1_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_22175PE=3SV=1	tr|A0A553SMA1|A0A553SMA1_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_22175PE=3SV=1	tr|A0A553SMA1|A0A553SMA1_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_22175PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	582.817626953125	2	582.816596	1163.61864	1.3947	0.00081286	1.745	0.001017	3.1397	0.0018299	582.8168958660585	78.751	1.1686	78.751	78.457	79.625	0					74	28	5	0	0	0	0.50999	1	8015	8015		52.937	3.4007	1	7233200			17550	33813	14317	14339	19519	19519					0.04337379814887754
IEGPDAKL	8	Unmodified	_IEGPDAKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa99_classI_Rep5	1	421.7356872558594	2	421.734543	841.454533	0.53232	0.0002245	-0.37764	-0.00015927	0.15467	6.523E-05	421.73430165545716	63.034	1.4334	63.034	62.777	64.21	0					74	35	4	0	0	0	0.21559	2	5656	5630;5656		122.18	19.343	1	14483000			17551	3687	14318	14340	19520;19521	19521					0.027464071148074254
IEGPIIKL	8	Unmodified	_IEGPIIKL_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-3|SMCHD1;ENST00000584897.5_1_18:2726458-2784452:+|nuORF	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	OvCa99_classI_Rep5	1	441.78802490234375	2	441.786579	881.558604	1.4695	0.0006492	0.85304	0.00037686	2.3225	0.0010261	441.7867945942966	101.84	1.0697	101.84	101.61	102.68	0					61	24	5	0	0	0	0.083813	2	11344	11320;11344		147.69	28.137	1	5403400			17552	2189	14319	14341	19522;19523	19523					0.11308733942325944
IEGPIIKL	8	Unmodified	_IEGPIIKL_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-3|SMCHD1;ENST00000584897.5_1_18:2726458-2784452:+|nuORF	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	OvCa9_classI_Rep3	3	441.7862548828125	2	441.786579	881.558604	0.18106	7.9989E-05	-0.39547	-0.00017472	-0.21442	-9.4727E-05	441.7862824031042	103.07	1.1527	101.55	101	102.15	-1.5211					53	21	3	0	0	0	0.58851	1	7136	7136		66.429	3.123	1	261390			17553	2189	14319	14341	19524	19524					0.11308733942325944
IEGPIIKL	8	Unmodified	_IEGPIIKL_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-3|SMCHD1;ENST00000584897.5_1_18:2726458-2784452:+|nuORF	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	441.78594970703125	2	441.786579	881.558604	-0.74101	-0.00032737	1.0571	0.00046702	0.3161	0.00013965	441.7869021522378	103.79	1.0456	101.67	101.17	102.22	-2.1192					47	19	3	0	0	0	0.48084	1	9377	9377		79.451	5.4763	1	263040			17554	2189	14319	14341	19525	19525					0.11308733942325944
IEGPIIKL	8	Unmodified	_IEGPIIKL_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;nc|ENSG00000101596|A6NHR9-3|SMCHD1;ENST00000584897.5_1_18:2726458-2784452:+|nuORF	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	441.786579	881.558604	0.37277	0.00016468	-0.17323	-7.653E-05	0.19954	8.8154E-05	441.78641915990323	102.39	1.8259	101.71	101.39	103.22	-0.68459	0.014255	-0.00042196	NaN	147.69	68	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208710			17555	2189	14319	14341							0.11308733942325944
IEGPLITL	8	Unmodified	_IEGPLITL_					0	0	0			REV__ENSG00000154957|ENST00000580306|ZNF18;REV__ENSG00000173258|ENST00000309235|ZNF483	REV__ENSG00000173258|ENST00000309235|ZNF483	MULTI-MSMS	OvCa9_classI_Rep3	3	428.2614440917969	2	428.262936	854.51132	-2.5111	-0.0010754	-0.44999	-0.00019271	-2.9611	-0.0012681	428.26264584865925	144.43	1.5889	143.46	143.1	144.69	-0.97301					79	31	4	0	0	0	0.74971	1	12031	12031		26.796	6.3143	1	839380	+		17556	21760;20407	14320	14342	19526	19526					0.0782445467133357
IEGVLLGKV	9	Unmodified	_IEGVLLGKV_					0	0	0			REV__C5|p.A1171Vfs*12|1|0.06|ENSG00000106804|chr9:120980231-120980232|-/GCACTCCAGCCTGGGTGACAGAGCGAGAACC|frameshift_variant	REV__C5|p.A1171Vfs*12|1|0.06|ENSG00000106804|chr9:120980231-120980232|-/GCACTCCAGCCTGGGTGACAGAGCGAGAACC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.2838134765625	2	464.29731	926.580068	-0.56203	-0.00026095	-0.6824	-0.00031684	-1.2444	-0.00057779	464.29680981419375	94.473	0.79144	93.374	93.01	93.802	-1.0995					31	15	4	0	0	0	0.027441	1	8511	8511		40.778	12.896	1	148870	+		17557	15719	14321	14343	19527	19527					0.11384118971045609
IEGYLVLVF	9	Unmodified	_IEGYLVLVF_					0	0	0			REV__ENST00000435239.1_1_7:32511604-32512018:+|nuORF	REV__ENST00000435239.1_1_7:32511604-32512018:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.8555908203125	2	526.804968	1051.59538	0.1041	5.4842E-05	-4.1774	-0.0022007	-4.0733	-0.0021458	526.8026936352456	128.58	1.8931	127.12	126.74	128.63	-1.4565					69	37	2	0	0	0	0.027462	1	12305	12305		26.796	0	1	50044	+		17558	25768	14322	14344	19528	19528					0.07164985768235965
IEHGIITNW	9	Unmodified	_IEHGIITNW_					0	0	0		ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF	ENSG00000159251|ENST00000290378|ACTC1	ENSG00000159251|ENST00000290378|ACTC1	MSMS	OvCa9_classI_Rep3	3	541.7848510742188	2	541.785099	1081.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.865	1	88.784	88.284	89.284	-2.0805								0	0	0	0.058381	1	5665	5665		76.774	1.7308	1				17559	5081	14323	14345	19529	19529					0.01812858817538654
IEHGIITNW	9	Unmodified	_IEHGIITNW_					0	0	0		ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF	ENSG00000159251|ENST00000290378|ACTC1	ENSG00000159251|ENST00000290378|ACTC1	MSMS	OvCa9_classI_Rep3	3	541.7854614257812	2	541.785099	1081.55564	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.901	1	88.821	88.321	89.321	-2.0805								0	0	0	0.023973	1	5669	5669		99.375	9.0051	1				17560	5081	14323	14345	19530	19530					0.01812858817538654
IEHGIITNW	9	Unmodified	_IEHGIITNW_					0	0	0		ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF	ENSG00000159251|ENST00000290378|ACTC1	ENSG00000159251|ENST00000290378|ACTC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.7863159179688	2	541.785099	1081.55564	-1.1376	-0.00061634	0.54225	0.00029378	-0.59536	-0.00032255	541.7853600054635	91.478	2.6779	88.936	88.346	91.024	-2.5425					127	52	5	0	0	0	0.091859	2	7935	7935;7948		99.375	8.5983	1	1891600			17561	5081	14323	14345	19531;19532	19531					0.01812858817538654
IEHGQAVSL	9	Unmodified	_IEHGQAVSL_					0	0	0		nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN;ENST00000506744.1_1_5:65372690-65374355:+|nuORF	nc|ENSG00000112851|Q96RT1-7|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	MULTI-MSMS	OvCa99_classI_Rep5	1	477.2572937011719	2	477.256174	952.497795	-0.24605	-0.00011743	0.35108	0.00016756	0.10504	5.013E-05	477.25620173971646	60.017	1.3451	60.017	59.726	61.071	0					55	32	3	0	0	0	0.10502	1	5209	5209		95.815	5.0385	1	3475700			17562	2931	14324	14346	19533	19533					0.019645968920940504
IEHLKASYVGF	11	Unmodified	_IEHLKASYVGF_					0	0	0			REV__ENST00000470300.5_1_1:247027247-247061635:-|nuORF	REV__ENST00000470300.5_1_1:247027247-247061635:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	421.24310302734375	3	421.895917	1262.66592	-2.15	-0.0009071	3.3588	0.0014171	1.2088	0.00050998	422.23148216576857	49.211	0.21033	46.069	45.937	46.147	-3.1416					5	3	2	0	0	0	0.025995	1	2765	2765		17.833	0	1	4589.5	+		17563	26259	14325	14347	19534	19534					0.04509659085874773
IEHMESDEL	9	Unmodified	_IEHMESDEL_					0	0	0		ENSG00000103549|ENST00000324685|RNF40;nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF	ENSG00000103549|ENST00000324685|RNF40	ENSG00000103549|ENST00000324685|RNF40	MULTI-MSMS	OvCa99_classI_Rep5	1	551.7407836914062	2	551.739696	1101.46484	-0.049417	-2.7265E-05	-0.25437	-0.00014035	-0.30379	-0.00016761	551.7393789491199	64.924	0.75462	64.924	64.672	65.426	0					41	18	3	0	0	0	0.031958	1	5930	5930		133.81	45.17	1	2330700			17564	2330	14326	14348	19535	19535					-0.08183398012920406
IEHNLRLV	8	Unmodified	_IEHNLRLV_					0	0	0		tr|A0A553SKI3|A0A553SKI3_NIACIRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=sigKPE=3SV=1	tr|A0A553SKI3|A0A553SKI3_NIACIRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=sigKPE=3SV=1	tr|A0A553SKI3|A0A553SKI3_NIACIRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=sigKPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	497.2956237792969	2	497.295633	992.576714	-0.63886	-0.0003177	0.081934	4.0745E-05	-0.55692	-0.00027695	497.29556624795856	76.294	1.7763	74.44	74.044	75.82	-1.854					92	33	4	0	0	0	0.61436	1	6317	6317		60.972	0.56831	1	888620			17565	33619	14327	14349	19536	19536					0.08012868917035121
IEIAQRLR	8	Unmodified	_IEIAQRLR_					0	0	0			REV__ENST00000450253.6_1_4:99801895-99802249:-|nuORF	REV__ENST00000450253.6_1_4:99801895-99802249:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.8338623046875	2	499.808908	997.603263	0.16955	8.4741E-05	-0.0062328	-3.1152E-06	0.16331	8.1625E-05	499.8084524640198	57.978	0.46185	57.978	57.775	58.237	0					16	10	2	0	0	0	0.028476	1	4874	4874		32.812	0	1	364170	+		17566	25958	14328	14350	19537	19537					0.1043655780838435
IEIDSPYEI	9	Unmodified	_IEIDSPYEI_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OvCa99_classI_Rep5	1	539.7705078125	2	539.76878	1077.52301	1.6662	0.00089937	0.38346	0.00020698	2.0497	0.0011063	539.7688072068732	122.74	1.2477	122.74	122.45	123.69	0					69	26	4	0	0	0	0.047062	1	14143	14143		120.62	21.246	1	1870200			17567	6376	14329	14351	19538	19538					-0.01265393095991385
IEIEEEFILQ	10	Unmodified	_IEIEEEFILQ_					0	0	0		ENSG00000153237|ENST00000283233|CCDC148	ENSG00000153237|ENST00000283233|CCDC148	ENSG00000153237|ENST00000283233|CCDC148	MULTI-MSMS	OvCa9_classI_Rep2	2	631.8301391601562	2	631.829369	1261.64418	-0.75971	-0.00048001	1.4691	0.00092823	0.70939	0.00044822	631.8302084543957	95.793	1.8791	94.765	94.219	96.098	-1.0281					113	37	5	0	0	0	0.26424	1	8619	8619		85.161	8.3867	1	755930			17568	5670	14330	14352	19539	19539					0.023828095467024468
IEIEKGTLTE	10	Unmodified	_IEIEKGTLTE_					0	0	0			REV__chr14:24218431-24232653|170|25.44|0.0|21.28|-|0|NEDD8-MDP1,None|2	REV__chr14:24218431-24232653|170|25.44|0.0|21.28|-|0|NEDD8-MDP1,None|2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.8073120117188	2	566.808436	1131.60232	0.039983	2.2662E-05	0.94577	0.00053607	0.98575	0.00055873	566.8089028889925	70.39	1.2107	66.909	66.639	67.849	-3.4812					41	24	2	0	0	0	0.026891	1	5421	5421		31.53	0	1	469920	+		17569	15908	14331	14353	19540	19540					0.04178253858140124
IEIELENSR	9	Unmodified	_IEIELENSR_					0	0	0		nc|ENSG00000185024|Q92994-7|BRF1;nc|ENSG00000185024|Q92994-8|BRF1;nc|ENSG00000185024|Q92994-5|BRF1;ENSG00000185024|ENST00000547530|BRF1;nc|ENSG00000185024|Q92994-9|BRF1;nc|ENSG00000185024|Q92994-3|BRF1	nc|ENSG00000185024|Q92994-7|BRF1	nc|ENSG00000185024|Q92994-7|BRF1	MULTI-MSMS	OvCa99_classI_Rep5	1	551.7921142578125	2	551.790578	1101.5666	-0.58636	-0.00032355	0.23779	0.00013121	-0.34857	-0.00019234	551.790588530218	52.236	0.52684	52.236	51.995	52.522	0					19	11	2	0	0	0	0.42676	1	4080	4080		49.442	1.7842	1	1647600			17570	8215	14332	14354	19541	19541					0.01988216401127829
IEIGVQHIL	9	Unmodified	_IEIGVQHIL_					0	0	0		ENSG00000068784|ENST00000263736|SRBD1	ENSG00000068784|ENST00000263736|SRBD1	ENSG00000068784|ENST00000263736|SRBD1	MULTI-MSMS	OvCa99_classI_Rep5	1	511.31048583984375	2	511.305667	1020.59678	2.7961	0.0014297	-1.0238	-0.00052349	1.7723	0.00090618	511.3052427382632	107.83	0.38203	107.83	107.6	107.99	0					19	8	3	0	0	0	0.19758	1	12182	12182		76.774	7.9873	1	609100			17571	1398	14333	14355	19542	19542					0.08730619856999056
IEIHQSTV	8	Unmodified	_IEIHQSTV_					0	0	0			REV__ENSG00000066777|ENST00000262215|ARFGEF1	REV__ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.769775390625	2	463.750724	925.486896	0.6214	0.00028817	-0.87946	-0.00040785	-0.25806	-0.00011968	463.7503144584244	84.516	1.004	81.853	81.639	82.643	-2.6629					48	20	3	0	0	0	0.028476	1	7096	7096		42.396	3.59	1	121810	+		17572	16823	14334	14356	19543	19543					0.02117194517813914
IEIIALTK	8	Unmodified	_IEIIALTK_					0	0	0		tr|A0A553SFY3|A0A553SFY3_NIACIMagnesiumtransportproteinCorAOS=NialliacirculansOX=1397GN=corAPE=3SV=1	tr|A0A553SFY3|A0A553SFY3_NIACIMagnesiumtransportproteinCorAOS=NialliacirculansOX=1397GN=corAPE=3SV=1	tr|A0A553SFY3|A0A553SFY3_NIACIMagnesiumtransportproteinCorAOS=NialliacirculansOX=1397GN=corAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.7626037597656	2	450.791861	899.569169	-0.041464	-1.8692E-05	2.7619	0.0012451	2.7205	0.0012264	450.79418846670535	58.911	0.41851	58.911	58.774	59.192	0					19	10	3	0	0	0	0.028476	1	5023	5023		11.511	0	1	1024100			17573	33093	14335	14357	19544	19544					0.11536716596754104
IEIIRGRPV	9	Unmodified	_IEIIRGRPV_					0	0	0			REV__tr|A0A7D6ZK12|A0A7D6ZK12_9CLOTProteinRecAOS=ClostridiumintestinaleOX=36845GN=recAPE=3SV=1	REV__tr|A0A7D6ZK12|A0A7D6ZK12_9CLOTProteinRecAOS=ClostridiumintestinaleOX=36845GN=recAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.8348999023438	2	526.832383	1051.65021	-1.4462	-0.00076193	3.7768	0.0019897	2.3306	0.0012278	526.832595694651	71.036	1.4523	67.58	67.203	68.656	-3.4563					68	29	4	0	0	0	0.21395	1	5399	5399		73.975	13.003	1	1225200	+		17574	32096	14336	14358	19545	19545					0.12645417359499334
IEIKKLMVK	9	Unmodified	_IEIKKLMVK_					0	0	0			REV__nc|ENSG00000145241|Q03188-2|CENPC	REV__nc|ENSG00000145241|Q03188-2|CENPC	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3189086914062	2	551.356845	1100.69914	-0.53041	-0.00029245	-4.4392	-0.0024476	-4.9696	-0.00274	551.3547255636247	53.086	0.43242	53.086	52.956	53.389	0					13	9	2	0	0	0	0.027402	1	4187	4187		56.721	0	1	127160	+		17575	19956	14337	14359	19546	19546					0.152815696042353
IEILLPRH	8	Unmodified	_IEILLPRH_					0	0	0		nc|ENSG00000166473|Q7Z442-2|PKD1L2;nc|ENSG00000166473|Q7Z442|PKD1L2;ENST00000533478.5_1_16:81174978-81214887:-|nuORF	nc|ENSG00000166473|Q7Z442-2|PKD1L2	nc|ENSG00000166473|Q7Z442-2|PKD1L2	MULTI-SECPEP	OvCa9_classI_Rep3	3	495.7727355957031	2	495.808377	989.6022	-0.043821	-2.1727E-05	-0.43385	-0.00021511	-0.47767	-0.00023683	495.8080497625373	80.226	0.65958	77.886	77.66	78.32	-2.3399					17	12	2	0	0	0	0.028476	1	4418	4418		25.45	0	1	33320			17576	15156	14338	14360	19547	19547					0.10698343439457858
IEILLPRH	8	Unmodified	_IEILLPRH_					0	0	0		nc|ENSG00000166473|Q7Z442-2|PKD1L2;nc|ENSG00000166473|Q7Z442|PKD1L2;ENST00000533478.5_1_16:81174978-81214887:-|nuORF	nc|ENSG00000166473|Q7Z442-2|PKD1L2	nc|ENSG00000166473|Q7Z442-2|PKD1L2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	495.808377	989.6022	-0.73483	-0.00036434	0.09954	4.9353E-05	-0.63529	-0.00031498	495.80831786075373	80.689	0.43708	77.978	77.762	78.199	-2.7106	0.046102	0.0001384	NaN	25.45	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23377			17577	15156	14338	14360							0.10698343439457858
IEILPLPVM	9	Oxidation (M)	_IEILPLPVM(Oxidation (M))_		IEILPLPVM(1)		IEILPLPVM(89)	0	0	1		nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-5|OS9;ENST00000553208.5_1_12:58087944-58109621:+|nuORF;nc|ENSG00000135506|Q13438-6|OS9;ENST00000549897.1_1_12:58087944-58088778:+|nuORF;ENST00000550793.1_1_12:58087944-58089649:+|nuORF	nc|ENSG00000135506|Q13438-4|OS9	nc|ENSG00000135506|Q13438-4|OS9	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.8055419921875	2	520.806654	1039.59875	-2.5055	-0.0013049	2.2072	0.0011495	-0.29832	-0.00015537	520.8077451755717	148.72	1.0462	147.29	146.88	147.92	-1.4344					40	21	2	0	0	0	0.13154	2	14669	14645;14669		88.643	50.831	1	71563			17578	4384	14339	14361	19548;19549	19549		143			0.0805391255057657
IEILPLPVM	9	Oxidation (M)	_IEILPLPVM(Oxidation (M))_					0	0	1		nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-5|OS9;ENST00000553208.5_1_12:58087944-58109621:+|nuORF;nc|ENSG00000135506|Q13438-6|OS9;ENST00000549897.1_1_12:58087944-58088778:+|nuORF;ENST00000550793.1_1_12:58087944-58089649:+|nuORF	nc|ENSG00000135506|Q13438-4|OS9	nc|ENSG00000135506|Q13438-4|OS9	MULTI-MATCH	OvCa9_classI_Rep2	2		2	520.806654	1039.59875	-2.3627	-0.0012305	2.1096	0.0010987	-0.25314	-0.00013184	520.80755704376	147.8	0.89502	147.57	147.17	148.07	-0.22697	0.19527	-0.00084061	NaN	88.643	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55394			17579	4384	14339	14361				143			0.0805391255057657
IEILPLPVM	9	Oxidation (M)	_IEILPLPVM(Oxidation (M))_					0	0	1		nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-5|OS9;ENST00000553208.5_1_12:58087944-58109621:+|nuORF;nc|ENSG00000135506|Q13438-6|OS9;ENST00000549897.1_1_12:58087944-58088778:+|nuORF;ENST00000550793.1_1_12:58087944-58089649:+|nuORF	nc|ENSG00000135506|Q13438-4|OS9	nc|ENSG00000135506|Q13438-4|OS9	MULTI-MATCH	OvCa9_classI_Rep3	3		2	520.806654	1039.59875	-3.8791	-0.0020203	3.8295	0.0019944	-0.04967	-2.5868E-05	520.8084665929399	148.22	1.1987	147.27	146.9	148.1	-0.95119	-0.10625	0.00095083	NaN	88.643	51	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76064			17580	4384	14339	14361				143			0.0805391255057657
IEILRVRLV	9	Unmodified	_IEILRVRLV_					0	0	0		nc|ENSG00000166762|Q96P56-4|CATSPER2;ENST00000415968.2_1_15:43932485-43940259:-|nuORF	nc|ENSG00000166762|Q96P56-4|CATSPER2	nc|ENSG00000166762|Q96P56-4|CATSPER2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	556.2575073242188	2	555.871508	1109.72846	1.0937	0.00060796	-1.5181	-0.00084389	-0.42443	-0.00023593	555.8706118260437	89.764	1.1566	87.189	86.851	88.007	-2.575					53	22	3	0	0	0	0.027462	1	7675	7675		32.812	1.2826	1	103230			17581	11597	14340	14362	19550	19550					0.17798849944756512
IEILRVRLV	9	Unmodified	_IEILRVRLV_					0	0	0		nc|ENSG00000166762|Q96P56-4|CATSPER2;ENST00000415968.2_1_15:43932485-43940259:-|nuORF	nc|ENSG00000166762|Q96P56-4|CATSPER2	nc|ENSG00000166762|Q96P56-4|CATSPER2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	555.871508	1109.72846	2.3271	0.0012936	-2.9653	-0.0016483	-0.63818	-0.00035475	555.8698334153546	88.214	1.0832	86.847	86.592	87.675	-1.3676	-0.24434	-0.00088861	NaN	25.574	49	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97304			17582	11597	14340	14362							0.17798849944756512
IEILRVRLV	9	Unmodified	_IEILRVRLV_					0	0	0		nc|ENSG00000166762|Q96P56-4|CATSPER2;ENST00000415968.2_1_15:43932485-43940259:-|nuORF	nc|ENSG00000166762|Q96P56-4|CATSPER2	nc|ENSG00000166762|Q96P56-4|CATSPER2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	555.871508	1109.72846	-0.90019	-0.00050039	0.26825	0.00014911	-0.63194	-0.00035128	555.8715670990512	89.368	1.3652	87.237	86.895	88.26	-2.1309	0.14609	0.0027063	NaN	25.574	56	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141020			17583	11597	14340	14362							0.17798849944756512
IEIPAEKVFL	10	Unmodified	_IEIPAEKVFL_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;ENSG00000067225|ENST00000335181|PKM;nc|ENSG00000067225|P14618-2|PKM;PKLR|p.L437Rfs*3|1|0.23|ENSG00000143627|chr1:155293279-155293303|GCTGCCCGACGTAGCTCCTCAAACA/-|frameshift_variant;nc|ENSG00000143627|P30613-2|PKLR;ENSG00000143627|ENST00000342741|PKLR	nc|ENSG00000067225|P14618-3|PKM;PKLR|p.L437Rfs*3|1|0.23|ENSG00000143627|chr1:155293279-155293303|GCTGCCCGACGTAGCTCCTCAAACA/-|frameshift_variant	nc|ENSG00000067225|P14618-3|PKM	MULTI-MSMS	OvCa99_classI_Rep5	1	579.84375	2	579.842082	1157.66961	1.2651	0.00073354	1.0576	0.00061327	2.3227	0.0013468	579.8425932374223	122.83	0.92836	122.83	122.49	123.42	0					50	19	4	0	0	0	0.44722	1	14146	14146		61.691	17.314	1	783740			17584	1372;5080	14341	14363	19551	19551					0.09708328859755966
IEIPRIGNS	9	Unmodified	_IEIPRIGNS_					0	0	0			REV__ENST00000248248.7_1_16:77225030-77225147:+|nuORF	REV__ENST00000248248.7_1_16:77225030-77225147:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	499.7662353515625	2	499.785099	997.555644	0.70384	0.00035177	-0.82714	-0.00041339	-0.1233	-6.1624E-05	499.7843528917061	65.391	1.2031	62.695	62.314	63.517	-2.6958					36	23	2	0	0	0	0.027461	1	5116	5116		25.574	5.5773	1	22452	+		17585	23845	14342	14364	19552	19552					0.05676858817525954
IEIPRIGNS	9	Unmodified	_IEIPRIGNS_					0	0	0			REV__ENST00000248248.7_1_16:77225030-77225147:+|nuORF	REV__ENST00000248248.7_1_16:77225030-77225147:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	499.785099	997.555644	-1.3931	-0.00069623	1.6585	0.00082887	0.2654	0.00013264	499.7859584659353	66.066	0.63071	62.581	62.325	62.956	-3.4854	-0.10891	0.00044478	NaN	49.442	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117510	+		17586	23845	14342	14364							0.05676858817525954
IEISKKTH	8	Unmodified	_IEISKKTH_					0	0	0		ENST00000368655.4_1_1:153782348-153782624:-|nuORF	ENST00000368655.4_1_1:153782348-153782624:-|nuORF	ENST00000368655.4_1_1:153782348-153782624:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	478.2822570800781	2	478.282192	954.549831	0.23585	0.0001128	-0.47891	-0.00022905	-0.24306	-0.00011625	478.28189034540947	81.857	1.4017	80.209	79.767	81.169	-1.6485					51	26	3	0	0	0	0.65582	1	6952	6952		52.299	0.96372	1	1372200			17587	10881	14343	14365	19553	19553					0.07073760305854648
IEITNIVIN	9	Unmodified	_IEITNIVIN_					0	0	0		tr|A0A7D7AGY4|A0A7D7AGY4_9CLOTYicCfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10365PE=3SV=1	tr|A0A7D7AGY4|A0A7D7AGY4_9CLOTYicCfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10365PE=3SV=1	tr|A0A7D7AGY4|A0A7D7AGY4_9CLOTYicCfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10365PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.3095703125	2	514.802957	1027.59136	0.025945	1.3357E-05	-0.47092	-0.00024243	-0.44497	-0.00022907	514.8025160304469	98.015	1.1163	96.255	95.818	96.934	-1.7595					33	21	2	0	0	0	0.027462	1	6604	6604		39.253	11.371	1	75916			17588	36269	14344	14366	19554	19554					0.0786689627452688
IEIVFAKP	8	Unmodified	_IEIVFAKP_					0	0	0		nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000271793|O60506-5|SYNCRIP;ENST00000434910.1_1_20:6195503-6195623:+|nuORF	nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.7875061035156	2	458.778754	915.542954	-0.38377	-0.00017606	1.574	0.0007221	1.1902	0.00054603	458.7792971823288	48.316	0.77868	48.316	48.116	48.895	0					33	17	3	0	0	0	0.028476	1	3523	3523		19.36	0	1	991620			17589	4365	14345	14367	19555	19555					0.08180447425274906
IEIYKNISK	9	Unmodified	_IEIYKNISK_					0	0	0			REV__tr|A0A7D6VSU7|A0A7D6VSU7_9CLOTBifunctionaldiguanylatecyclase/phosphodiesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_05530PE=4SV=1	REV__tr|A0A7D6VSU7|A0A7D6VSU7_9CLOTBifunctionaldiguanylatecyclase/phosphodiesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_05530PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	554.3235473632812	2	554.324057	1106.63356	-0.47697	-0.0002644	0.037076	2.0552E-05	-0.4399	-0.00024385	554.3240199899825	50.497	3.0682	47.703	47.381	50.449	-2.794					156	61	5	0	0	0	0.26076	1	3244	3244		67.494	3.2864	1	1546400	+		17590	31539	14346	14368	19556	19556					0.08450871682885008
IEIYVQKV	8	Unmodified	_IEIYVQKV_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000070371|ENST00000427926|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa9_classI_Rep3	3	496.2954406738281	2	496.294768	990.574983	-0.74319	-0.00036884	0.37153	0.00018439	-0.37166	-0.00018445	496.2949293145914	87.755	1.6548	85.578	85.293	86.948	-2.1768					86	32	4	0	0	0	0.10246	2	5297	5297;5303		143.11	31.459	1	609730			17591	4906;1426	14347	14369	19557;19558	19557					0.07931815108440787
IEIYVQKV	8	Unmodified	_IEIYVQKV_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000070371|ENST00000427926|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.2958679199219	2	496.294768	990.574983	-2.2709	-0.001127	1.4379	0.00071362	-0.83301	-0.00041342	496.29543513331333	88.185	1.4461	85.583	85.327	86.773	-2.6027					89	28	4	0	0	0	0.10246	2	7534	7521;7534		143.11	27.972	1	474670			17592	4906;1426	14347	14369	19559;19560	19560					0.07931815108440787
IEIYVQKV	8	Unmodified	_IEIYVQKV_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000070371|ENST00000427926|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MATCH	OvCa9_classI_Rep2	2		2	496.294768	990.574983	1.0762	0.0005341	-1.7466	-0.00086682	-0.67041	-0.00033272	496.29384039369273	87.156	1.3951	85.725	85.281	86.676	-1.4311	0.096482	-0.0013006	NaN	143.11	79	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299180			17593	4906;1426	14347	14369							0.07931815108440787
IEKAANVLL	9	Unmodified	_IEKAANVLL_					0	0	0		tr|A0A553SS46|A0A553SS46_NIACIZn-dependenthydrolaseOS=NialliacirculansOX=1397GN=CEQ21_02325PE=3SV=1	tr|A0A553SS46|A0A553SS46_NIACIZn-dependenthydrolaseOS=NialliacirculansOX=1397GN=CEQ21_02325PE=3SV=1	tr|A0A553SS46|A0A553SS46_NIACIZn-dependenthydrolaseOS=NialliacirculansOX=1397GN=CEQ21_02325PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.78826904296875	2	485.800217	969.585882	2.2438	0.00109	-1.0971	-0.00053299	1.1466	0.00055704	485.79918723673353	82.582	0.29943	82.582	82.437	82.736	0					10	6	2	0	0	0	0.027462	1	8550	8550		39.253	0	1	279830			17594	34332	14348	14370	19561	19561					0.09987217482705546
IEKAKIEP	8	Unmodified	_IEKAKIEP_					0	0	0			REV__chr5:134206131-134225209|355|29.23|0.0|21.48|-|0|PPP2CA,PPP2CA|1	REV__chr5:134206131-134225209|355|29.23|0.0|21.48|-|0|PPP2CA,PPP2CA|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.2756042480469	2	464.279118	926.543683	-0.65963	-0.00030625	0.54655	0.00025375	-0.11308	-5.2499E-05	464.2791588940317	77.147	1.1526	74.331	73.673	74.825	-2.8165					35	23	2	0	0	0	0.028476	1	6147	6147		39.253	5.0803	1	123470	+		17595	16061	14349	14371	19562	19562					0.07747242074322003
IEKAKKHG	8	Unmodified	_IEKAKKHG_					0	0	0			REV__tr|A0A553SJQ4|A0A553SJQ4_NIACI1,4-dihydroxy-2-naphthoyl-CoAsynthaseOS=NialliacirculansOX=1397GN=menBPE=3SV=1	REV__tr|A0A553SJQ4|A0A553SJQ4_NIACI1,4-dihydroxy-2-naphthoyl-CoAsynthaseOS=NialliacirculansOX=1397GN=menBPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	455.7789306640625	2	455.777077	909.5396	-0.3493	-0.0001592	0.31952	0.00014563	-0.029776	-1.3571E-05	455.7771590250626	49.278	0.64818	49.278	49.075	49.723	0					21	14	2	0	0	0	0.74229	1	3673	3673		30.504	0	1	590480	+		17596	30028	14350	14372	19563	19563					0.08121197371281141
IEKAPNNIMS	10	Oxidation (M)	_IEKAPNNIM(Oxidation (M))S_		IEKAPNNIM(1)S		IEKAPNNIM(73)S	0	0	1			REV__ENST00000438277.5_1_2:128855105-128928859:+|nuORF	REV__ENST00000438277.5_1_2:128855105-128928859:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	566.7887573242188	2	566.786981	1131.55941	1.8122	0.0010271	1.5904	0.00090139	3.4026	0.0019285	566.7877677672303	127.25	1.3202	127.25	127.05	128.37	0					81	28	4	0	0	0	0.36605	1	14797	14797		72.879	14.097	1	2562000	+		17597	19402	14351	14373	19564	19564		445			-0.0011083947094903124
IEKARQHSHGK	11	Unmodified	_IEKARQHSHGK_					0	0	0			REV__ENSG00000132681|ENST00000368081|ATP1A4	REV__ENSG00000132681|ENST00000368081|ATP1A4	MULTI-MSMS	OvCa9_classI_Rep4_	4	645.8551635742188	2	645.854909	1289.69527	-0.037061	-2.3936E-05	1.1172	0.00072157	1.0802	0.00069764	645.8555719278178	103.66	1.204	101.54	101.22	102.43	-2.1192					56	22	3	0	0	0	0.68391	1	9370	9370		35.178	0.026198	1	334800	+		17598	19095	14352	14374	19565	19565					0.06200616154751515
IEKARQHSHGK	11	Unmodified	_IEKARQHSHGK_					0	0	0			REV__ENSG00000132681|ENST00000368081|ATP1A4	REV__ENSG00000132681|ENST00000368081|ATP1A4	MULTI-MATCH	OvCa99_classI_Rep5	1		2	645.854909	1289.69527	0.60225	0.00038897	3.711	0.0023968	4.3133	0.0027857	645.856551519686	101.51	0.7634	101.51	101.27	102.04	0	-0.00051878	0.0026504	NaN	35.178	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1072100	+		17599	19095	14352	14374							0.06200616154751515
IEKARQHSHGK	11	Unmodified	_IEKARQHSHGK_					0	0	0			REV__ENSG00000132681|ENST00000368081|ATP1A4	REV__ENSG00000132681|ENST00000368081|ATP1A4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	645.854909	1289.69527	-2.0269	-0.0013091	3.1122	0.00201	1.0852	0.0007009	645.8567550636639	102.22	1.6311	101.54	100.99	102.62	-0.68459	0.029689	0.0018769	NaN	35.178	94	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	328900	+		17600	19095	14352	14374							0.06200616154751515
IEKARQHSHGK	11	Unmodified	_IEKARQHSHGK_					0	0	0			REV__ENSG00000132681|ENST00000368081|ATP1A4	REV__ENSG00000132681|ENST00000368081|ATP1A4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	645.854909	1289.69527	-0.36015	-0.00023261	1.198	0.00077371	0.83781	0.0005411	645.8556128821664	102.96	1.5195	101.44	101.05	102.57	-1.5211	-0.066546	-0.00059571	NaN	35.178	67	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	402790	+		17601	19095	14352	14374							0.06200616154751515
IEKARQHSHGK	11	Unmodified	_IEKARQHSHGK_					0	0	0			REV__ENSG00000132681|ENST00000368081|ATP1A4	REV__ENSG00000132681|ENST00000368081|ATP1A4	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	645.854909	1289.69527	-0.037061	-2.3936E-05	1.1172	0.00072157	1.0802	0.00069764	645.8555719278178	103.66	1.204	101.54	101.22	102.43	-2.1192	0.037376	-0.00069998	NaN	35.178	56	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	334800	+		17602	19095	14352	14374							0.06200616154751515
IEKAVQSL	8	Unmodified	_IEKAVQSL_					0	0	0		ENSG00000162704|ENST00000359856|ARPC5;nc|ENSG00000162704|O15511-2|ARPC5;ENST00000462965.1_1_1:183596669-183602348:-|nuORF;ENST00000602490.1_1_1:183599580-183599799:-|nuORF	ENSG00000162704|ENST00000359856|ARPC5	ENSG00000162704|ENST00000359856|ARPC5	MSMS	OvCa9_classI_Rep4_	4	444.2643737792969	2	444.263468	886.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.799	1	56.407	55.907	56.907	-3.392								0	0	0	1.4046E-07	1	4012	4012		176.41	33.304	1				17603	6217	14353	14375	19566	19566					0.06458669040239329
IEKAVQSL	8	Unmodified	_IEKAVQSL_					0	0	0		ENSG00000162704|ENST00000359856|ARPC5;nc|ENSG00000162704|O15511-2|ARPC5;ENST00000462965.1_1_1:183596669-183602348:-|nuORF;ENST00000602490.1_1_1:183599580-183599799:-|nuORF	ENSG00000162704|ENST00000359856|ARPC5	ENSG00000162704|ENST00000359856|ARPC5	MSMS	OvCa9_classI_Rep4_	4	444.2646179199219	2	444.263468	886.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.896	1	56.466	55.966	56.966	-3.43								0	0	0	0.0010816	1	4024	4024		148.04	4.9361	1				17604	6217	14353	14375	19567	19567					0.06458669040239329
IEKAVQSL	8	Unmodified	_IEKAVQSL_					0	0	0		ENSG00000162704|ENST00000359856|ARPC5;nc|ENSG00000162704|O15511-2|ARPC5;ENST00000462965.1_1_1:183596669-183602348:-|nuORF;ENST00000602490.1_1_1:183599580-183599799:-|nuORF	ENSG00000162704|ENST00000359856|ARPC5	ENSG00000162704|ENST00000359856|ARPC5	MSMS	OvCa9_classI_Rep4_	4	444.2649230957031	2	444.263468	886.512382	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60	1	56.57	56.07	57.07	-3.43								0	0	0	0.18711	1	4037	4037		104.75	5.3716	1				17605	6217	14353	14375	19568	19568					0.06458669040239329
IEKDPERKN	9	Unmodified	_IEKDPERKN_					0	0	0		tr|A0A7D6VP52|A0A7D6VP52_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15300PE=4SV=1	tr|A0A7D6VP52|A0A7D6VP52_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15300PE=4SV=1	tr|A0A7D6VP52|A0A7D6VP52_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15300PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.8046264648438	2	564.80402	1127.59349	0.85386	0.00048226	-1.4355	-0.00081077	-0.58164	-0.00032851	564.8030017565814	74.572	0.9169	71.342	71.095	72.012	-3.2308					37	18	4	0	0	0	0.35444	1	5848	5848		56.721	3.7844	1	398630			17606	34750	14354	14376	19569	19569					0.03479325012335721
IEKDPERKN	9	Unmodified	_IEKDPERKN_					0	0	0		tr|A0A7D6VP52|A0A7D6VP52_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15300PE=4SV=1	tr|A0A7D6VP52|A0A7D6VP52_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15300PE=4SV=1	tr|A0A7D6VP52|A0A7D6VP52_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15300PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	564.80402	1127.59349	-0.086769	-4.9007E-05	-0.22079	-0.0001247	-0.30756	-0.00017371	564.8038428941303	73.546	1.3083	71.146	70.272	71.581	-2.3999	-0.0037578	0.00023014	NaN	56.721	43	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123170			17607	34750	14354	14376							0.03479325012335721
IEKDPERKN	9	Unmodified	_IEKDPERKN_					0	0	0		tr|A0A7D6VP52|A0A7D6VP52_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15300PE=4SV=1	tr|A0A7D6VP52|A0A7D6VP52_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15300PE=4SV=1	tr|A0A7D6VP52|A0A7D6VP52_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15300PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	564.80402	1127.59349	-0.3209	-0.00018124	0.11961	6.7554E-05	-0.20129	-0.00011369	564.8040321734932	73.387	0.84364	70.9	70.677	71.521	-2.4873	-0.24993	0.00061466	NaN	56.721	46	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265900			17608	34750	14354	14376							0.03479325012335721
IEKEDRGAL	9	Unmodified	_IEKEDRGAL_					0	0	0			REV__nc|ENSG00000164338|Q8TED0-2|UTP15	REV__nc|ENSG00000164338|Q8TED0-2|UTP15	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.794921875	2	515.780013	1029.54547	-2.0774	-0.0010715	-0.82225	-0.0004241	-2.8996	-0.0014956	515.7793580441088	87.748	1.3592	85.121	84.448	85.808	-2.6269					40	26	2	0	0	0	0.027295	1	7460	7460		84.916	18.486	1	53184	+		17609	20978	14355	14377	19570	19570					0.03188251092274186
IEKEDRGAL	9	Unmodified	_IEKEDRGAL_					0	0	0			REV__nc|ENSG00000164338|Q8TED0-2|UTP15	REV__nc|ENSG00000164338|Q8TED0-2|UTP15	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.780013	1029.54547	0.29916	0.0001543	-0.99947	-0.00051551	-0.70031	-0.00036121	515.7796354837559	86.655	1.2386	85.224	84.553	85.791	-1.4311	0.12775	-0.00049385	NaN	84.916	36	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25287	+		17610	20978	14355	14377							0.03188251092274186
IEKEDRGAL	9	Unmodified	_IEKEDRGAL_					0	0	0			REV__nc|ENSG00000164338|Q8TED0-2|UTP15	REV__nc|ENSG00000164338|Q8TED0-2|UTP15	MULTI-MATCH	OvCa9_classI_Rep3	3		2	515.780013	1029.54547	-0.39203	-0.0002022	0.15976	8.2401E-05	-0.23227	-0.0001198	515.779751273425	87.12	0.86742	84.943	84.683	85.551	-2.1768	-0.15261	0.00070197	NaN	84.916	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50361	+		17611	20978	14355	14377							0.03188251092274186
IEKEEPNH	8	Unmodified	_IEKEEPNH_					0	0	0			REV__nc|ENSG00000118200|Q08AD1-2|CAMSAP2	REV__nc|ENSG00000118200|Q08AD1-2|CAMSAP2	MULTI-MSMS	OvCa99_classI_Rep5	1	498.2445983886719	2	498.243264	994.471974	-0.8829	-0.0004399	0.61953	0.00030868	-0.26337	-0.00013122	498.24349768675347	50.337	0.57146	50.337	50.114	50.685	0					39	12	4	0	0	0	0.50674	1	3836	3836		76.847	0	1	2720400	+		17612	18384	14356	14378	19571	19571					-0.025482973501880224
IEKEGEFTL	9	Unmodified	_IEKEGEFTL_					0	0	0		ENSG00000169189|ENST00000361439|NSMCE1;ENST00000569236.5_1_16:27236480-27252833:-|nuORF;ENST00000565070.5_1_16:27237776-27268891:-|nuORF	ENSG00000169189|ENST00000361439|NSMCE1	ENSG00000169189|ENST00000361439|NSMCE1	MULTI-MSMS	OvCa99_classI_Rep5	1	533.2777709960938	2	533.276772	1064.53899	1.4242	0.0007595	0.61118	0.00032593	2.0354	0.0010854	533.2770089853656	83.13	0.8474	83.13	82.824	83.671	0					39	19	3	0	0	0	0.13326	1	8628	8628		88.177	8.4643	1	1907500			17613	6985	14357	14379	19572	19572					0.009303131409296839
IEKEGEFTL	9	Unmodified	_IEKEGEFTL_					0	0	0		ENSG00000169189|ENST00000361439|NSMCE1;ENST00000569236.5_1_16:27236480-27252833:-|nuORF;ENST00000565070.5_1_16:27237776-27268891:-|nuORF	ENSG00000169189|ENST00000361439|NSMCE1	ENSG00000169189|ENST00000361439|NSMCE1	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.2777099609375	2	533.276772	1064.53899	0.31996	0.00017063	-1.0085	-0.00053778	-0.68849	-0.00036716	533.2760775288318	86.115	1.04	83.469	83.142	84.182	-2.6463					58	20	4	0	0	0	0.040625	2	7270	7270;7282		126.24	16.764	1	627980			17614	6985	14357	14379	19573;19574	19573					0.009303131409296839
IEKEGEFTL	9	Unmodified	_IEKEGEFTL_					0	0	0		ENSG00000169189|ENST00000361439|NSMCE1;ENST00000569236.5_1_16:27236480-27252833:-|nuORF;ENST00000565070.5_1_16:27237776-27268891:-|nuORF	ENSG00000169189|ENST00000361439|NSMCE1	ENSG00000169189|ENST00000361439|NSMCE1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	533.276772	1064.53899	-2.6035	-0.0013884	2.0276	0.0010813	-0.57587	-0.0003071	533.2776645567491	84.943	1.2896	83.397	82.95	84.239	-1.5462	0.082797	0.0012915	NaN	126.24	65	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255890			17615	6985	14357	14379							0.009303131409296839
IEKEGEFTL	9	Unmodified	_IEKEGEFTL_					0	0	0		ENSG00000169189|ENST00000361439|NSMCE1;ENST00000569236.5_1_16:27236480-27252833:-|nuORF;ENST00000565070.5_1_16:27237776-27268891:-|nuORF	ENSG00000169189|ENST00000361439|NSMCE1	ENSG00000169189|ENST00000361439|NSMCE1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	533.276772	1064.53899	-0.54301	-0.00028958	-0.061701	-3.2904E-05	-0.60471	-0.00032248	533.2766285532075	85.481	1.2011	83.261	82.986	84.187	-2.2204	-0.05344	-0.0009369	NaN	126.24	73	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	698880			17616	6985	14357	14379							0.009303131409296839
IEKELKIFN	9	Unmodified	_IEKELKIFN_					0	0	0		tr|A0A7D6W0K3|A0A7D6W0K3_9CLOTATP-dependenthelicase/deoxyribonucleasesubunitBOS=ClostridiumintestinaleOX=36845GN=addBPE=3SV=1	tr|A0A7D6W0K3|A0A7D6W0K3_9CLOTATP-dependenthelicase/deoxyribonucleasesubunitBOS=ClostridiumintestinaleOX=36845GN=addBPE=3SV=1	tr|A0A7D6W0K3|A0A7D6W0K3_9CLOTATP-dependenthelicase/deoxyribonucleasesubunitBOS=ClostridiumintestinaleOX=36845GN=addBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.329345703125	2	567.331882	1132.64921	-2.3399	-0.0013275	-1.3687	-0.0007765	-3.7086	-0.002104	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.69123	1	14501	14501		20.947	0.95016	1	241060			17617	35379	14358	14380	19575	19575					0.0881915819995811
IEKEPLAHL	9	Unmodified	_IEKEPLAHL_					0	0	0		ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.2420654296875	2	525.303124	1048.5917	-1.3559	-0.00071225	0.88776	0.00046634	-0.46812	-0.00024591	525.3034613206107	65.703	1.1161	62.218	61.938	63.054	-3.4854					43	22	3	0	0	0	0.027433	1	4799	4799		64.207	27.048	1	212320			17618	4311	14359	14381	19576	19576					0.06934315994362805
IEKEPLAHL	9	Unmodified	_IEKEPLAHL_					0	0	0		ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	MULTI-MATCH	OvCa9_classI_Rep2	2		2	525.303124	1048.5917	0.32313	0.00016974	-0.5183	-0.00027227	-0.19517	-0.00010253	525.3026604111799	64.843	1.1859	62.118	61.758	62.943	-2.7245	0.058337	-0.00065773	NaN	64.207	54	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145340			17619	4311	14359	14381							0.06934315994362805
IEKFDKSKL	9	Unmodified	_IEKFDKSKL_					0	0	0		ENSG00000154620|ENST00000284856|TMSB4Y;ENSG00000205542|ENST00000451311|TMSB4X;ENST00000323496.5_1_9:131104444-131104642:+|nuORF	ENSG00000154620|ENST00000284856|TMSB4Y	ENSG00000154620|ENST00000284856|TMSB4Y	MULTI-MSMS	OvCa9_classI_Rep2	2	554.3239135742188	2	554.324057	1106.63356	-0.47697	-0.0002644	0.037076	2.0552E-05	-0.4399	-0.00024385	554.3240199899825	50.497	3.0682	47.703	47.381	50.449	-2.794					156	61	5	0	0	0	0.06549	11	3255	3249;3255;3261;3267;3273;3279;3285;3291;3298;3311;3317		109.83	25.849	1	1546400			17620	5746	14360	14382	19577;19578;19579;19580;19581;19582;19583;19584;19585;19586;19587	19578					0.08450871682907746
IEKFDKSKL	9	Unmodified	_IEKFDKSKL_					0	0	0		ENSG00000154620|ENST00000284856|TMSB4Y;ENSG00000205542|ENST00000451311|TMSB4X;ENST00000323496.5_1_9:131104444-131104642:+|nuORF	ENSG00000154620|ENST00000284856|TMSB4Y	ENSG00000154620|ENST00000284856|TMSB4Y	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.3233032226562	2	554.324057	1106.63356	-0.61833	-0.00034276	-0.076108	-4.2188E-05	-0.69444	-0.00038495	554.3239903378908	50.863	3.9984	47.689	47.412	51.41	-3.1734					211	78	5	0	0	0	0.035046	7	2971	2936;2947;2959;2971;2983;2995;3008		131.12	29.515	1	3889100			17621	5746	14360	14382	19588;19589;19590;19591;19592;19593;19594	19591					0.08450871682907746
IEKFQKEKLL	10	Unmodified	_IEKFQKEKLL_					0	0	0		tr|A0A553SL75|A0A553SL75_NIACIUPF0302proteinCEQ21_20110OS=NialliacirculansOX=1397GN=CEQ21_20110PE=3SV=1	tr|A0A553SL75|A0A553SL75_NIACIUPF0302proteinCEQ21_20110OS=NialliacirculansOX=1397GN=CEQ21_20110PE=3SV=1	tr|A0A553SL75|A0A553SL75_NIACIUPF0302proteinCEQ21_20110OS=NialliacirculansOX=1397GN=CEQ21_20110PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	638.388671875	2	638.387188	1274.75982	2.4392	0.0015571	-0.22634	-0.00014449	2.2128	0.0014126	638.3869726178618	113.66	0.86304	113.66	113.29	114.15	0					46	20	3	0	0	0	0.30325	1	12943	12943		80.455	3.137	1	722010			17622	33692	14361	14383	19595	19595					0.1334337818818767
IEKIFELKN	9	Unmodified	_IEKIFELKN_					0	0	0		tr|A0A553SLP5|A0A553SLP5_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21025PE=4SV=1	tr|A0A553SLP5|A0A553SLP5_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21025PE=4SV=1	tr|A0A553SLP5|A0A553SLP5_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21025PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3296508789062	2	567.331882	1132.64921	-3.474	-0.0019709	-0.21845	-0.00012393	-3.6925	-0.0020949	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.66262	1	12222	12222		24.519	1.4767	1	458690			17623	33749	14362	14384	19596	19596					0.0881915819995811
IEKILKKELI	10	Unmodified	_IEKILKKELI_					0	0	0			REV__tr|A0A7D6VSK9|A0A7D6VSK9_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23155PE=4SV=1	REV__tr|A0A7D6VSK9|A0A7D6VSK9_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23155PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	409.6082763671875	3	409.607596	1225.80096	1.1396	0.00046679	-0.24169	-9.9E-05	0.89792	0.00036779	409.6074659919173	107.95	5.8573	106.76	106.27	112.13	-1.1978					409	114	4	0	0	0	0.6898	1	8014	8014		31.634	4.587	1	1037400	+		17624	31515	14363	14385	19597	19597					0.19709139227666128
IEKIWHIVDH	10	Unmodified	_IEKIWHIVDH_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OvCa99_classI_Rep5	1	645.3547973632812	2	645.35368	1288.69281	-0.69651	-0.0004495	-2.691	-0.0017367	-3.3875	-0.0021862	645.35177860207	70.229	0.51927	70.229	70.046	70.565	0					37	12	4	0	0	0	0.28845	1	6734	6734		82.241	12.613	1	2969800	+		17625	16701	14364	14386	19598	19598					0.06000767697082665
IEKIWHIVDH	10	Unmodified	_IEKIWHIVDH_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	645.35368	1288.69281	-0.69651	-0.0004495	-2.691	-0.0017367	-3.3875	-0.0021862	645.35177860207	70.229	0.51927	70.229	70.046	70.565	0	0	0	NaN	82.241	37	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2969800	+		17626	16701	14364	14386							0.06000767697082665
IEKKEKAN	8	Unmodified	_IEKKEKAN_					0	0	0		nc|ENSG00000156313|Q92834-4|RPGR;nc|ENSG00000156313|Q92834-2|RPGR;nc|ENSG00000156313|Q92834|RPGR	nc|ENSG00000156313|Q92834-4|RPGR	nc|ENSG00000156313|Q92834-4|RPGR	MULTI-MSMS	OvCa99_classI_Rep5	1	480.2799072265625	2	480.279649	958.544745	-0.48092	-0.00023097	0.55482	0.00026647	0.073901	3.5493E-05	480.27974611037837	37.933	0.63378	37.933	37.714	38.348	0					27	13	3	0	0	0	0.39692	1	2120	2120		88.643	3.2834	1	391360			17627	15113	14365	14387	19599	19599					0.06381456443239131
IEKKRFEL	8	Unmodified	_IEKKRFEL_					0	0	0		tr|A0A7D6ZJX9|A0A7D6ZJX9_9CLOTAspartyl-phosphatephosphataseSpo0EfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10340PE=4SV=1	tr|A0A7D6ZJX9|A0A7D6ZJX9_9CLOTAspartyl-phosphatephosphataseSpo0EfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10340PE=4SV=1	tr|A0A7D6ZJX9|A0A7D6ZJX9_9CLOTAspartyl-phosphatephosphataseSpo0EfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10340PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	531.816650390625	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.74754	1	14075	14075		27.882	2.3082	1	166960			17628	35652	14366	14388	19600	19600					0.09498308748334239
IEKKYDEEL	9	Unmodified	_IEKKYDEEL_					0	0	0		ENSG00000149591|ENST00000392951|TAGLN;ENST00000533863.1_2_11:117073729-117073927:+|nuORF	ENSG00000149591|ENST00000392951|TAGLN	ENSG00000149591|ENST00000392951|TAGLN	MULTI-MSMS	OvCa99_classI_Rep5	1	583.8016357421875	2	583.800611	1165.58667	-1.0571	-0.00061716	0.329	0.00019207	-0.72814	-0.00042509	583.8008237979673	49.571	3.147	49.571	49.287	52.434	0					143	72	5	0	0	0	0.013371	4	3718	3695;3718;3742;3782		158.07	30.613	1	37994000			17629	5478	14367	14389	19601;19602;19603;19604	19602					0.010499673411231925
IEKLAVEAL	9	Unmodified	_IEKLAVEAL_					0	0	0		ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	OvCa9_classI_Rep2	2	493.29986572265625	2	493.30005	984.585547	0.31516	0.00015547	-0.67503	-0.00033299	-0.35987	-0.00017752	493.29951922782965	93.613	1.4378	92.445	91.904	93.342	-1.168					70	27	3	0	0	0	0.066102	2	8365	8358;8365		109.48	8.2257	1	378080			17630	6645	14368	14390	19605;19606	19606					0.09263797762855575
IEKLAVEAL	9	Unmodified	_IEKLAVEAL_					0	0	0		ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	OvCa9_classI_Rep3	3	493.3011169433594	2	493.30005	984.585547	-0.90958	-0.0004487	0.76403	0.0003769	-0.14555	-7.1802E-05	493.3002489198619	94.362	1.4127	92.466	91.95	93.362	-1.8956					79	27	4	0	0	0	0.033166	2	6091	6091;6098		132.76	31.157	1	453740			17631	6645	14368	14390	19607;19608	19607					0.09263797762855575
IEKLAVEAL	9	Unmodified	_IEKLAVEAL_					0	0	0		ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.3016052246094	2	493.30005	984.585547	-0.52448	-0.00025873	-0.042936	-2.118E-05	-0.56742	-0.00027991	493.2997604747197	94.922	1.601	92.454	91.762	93.363	-2.4685					68	31	3	0	0	0	0.075543	2	8331	8331;8343		104.06	13.687	1	401900			17632	6645	14368	14390	19609;19610	19609					0.09263797762855575
IEKLFESTT	9	Unmodified	_IEKLFESTT_					0	0	0			REV__nc|ENSG00000141449|Q9C091-3|GREB1L	REV__nc|ENSG00000141449|Q9C091-3|GREB1L	MULTI-MSMS	OvCa9_classI_Rep3	3	534.2839965820312	2	534.284597	1066.55464	-2.0798	-0.0011112	1.0136	0.00054156	-1.0662	-0.00056963	534.2851091761327	143.26	1.286	142.27	141.94	143.23	-0.9903					60	25	3	0	0	0	0.64427	1	11929	11929		26.693	0	1	116190	+		17633	19740	14369	14391	19611	19611					0.02402599657943938
IEKLKAKPL	9	Unmodified	_IEKLKAKPL_					0	0	0			REV__ENST00000441170.1_1_4:118496697-118497264:-|nuORF	REV__ENST00000441170.1_1_4:118496697-118497264:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	520.3472290039062	2	520.347335	1038.68012	0.45282	0.00023562	-0.76983	-0.00040058	-0.31702	-0.00016496	520.346854726536	130.58	2.2687	129.46	129.13	131.39	-1.1166					144	45	5	0	0	0	0.50149	1	10462	10462		42.396	0	1	1601100	+		17634	25841	14370	14392	19612	19612					0.16232356304840323
IEKLKLVMQ	9	Unmodified	_IEKLKLVMQ_					0	0	0			REV__nc|ENSG00000188827|Q8IY92-2|SLX4	REV__nc|ENSG00000188827|Q8IY92-2|SLX4	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3182373046875	2	551.338652	1100.66275	-0.54275	-0.00029924	2.0677	0.00114	1.525	0.00084078	551.3397714634833	53.097	0.30592	53.097	52.999	53.305	0					11	6	2	0	0	0	0.027462	1	4210	4210		44.117	5.3107	1	141770	+		17635	22743	14371	14393	19613	19613					0.11644692707523063
IEKLKNGI	8	Unmodified	_IEKLKNGI_					0	0	0		nc|ENSG00000138778|Q02224-3|CENPE;ENSG00000138778|ENST00000265148|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.8021545410156	2	457.78711	913.559667	2.6523	0.0012142	-0.39903	-0.00018267	2.2533	0.0010315	457.78682151343855	96.511	0.24554	96.511	96.338	96.584	0					8	5	2	0	0	0	0.028476	1	10567	10567		45.952	18.07	1	79522			17636	4730	14372	14394	19614	19614					0.09942948311231703
IEKLKNGI	8	Unmodified	_IEKLKNGI_					0	0	0		nc|ENSG00000138778|Q02224-3|CENPE;ENSG00000138778|ENST00000265148|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	MULTI-MATCH	OvCa9_classI_Rep3	3		2	457.78711	913.559667	-0.32974	-0.00015095	0.58653	0.00026851	0.25679	0.00011756	457.7867748134484	98.246	0.72368	96.486	96.262	96.986	-1.7595	-0.050747	0.00060225	NaN	45.952	22	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29951			17637	4730	14372	14394							0.09942948311231703
IEKLKNGI	8	Unmodified	_IEKLKNGI_					0	0	0		nc|ENSG00000138778|Q02224-3|CENPE;ENSG00000138778|ENST00000265148|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	457.78711	913.559667	-0.28017	-0.00012826	-0.2007	-9.1876E-05	-0.48086	-0.00022013	457.7869010104778	98.939	0.72609	96.613	96.382	97.108	-2.3253	0.076445	-0.00011851	NaN	45.952	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35612			17638	4730	14372	14394							0.09942948311231703
IEKLLNYAP	9	Unmodified	_IEKLLNYAP_					0	0	0		ENSG00000177700|ENST00000322028|POLR2L	ENSG00000177700|ENST00000322028|POLR2L	ENSG00000177700|ENST00000322028|POLR2L	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.8064575195312	2	530.8055	1059.59645	-1.2444	-0.00066053	1.3816	0.00073335	0.13718	7.2816E-05	530.806174780407	94.216	1.3837	91.747	91.478	92.861	-2.4685					57	27	3	0	0	0	0.37135	1	8242	8242		54.776	0	1	217380			17639	7705	14373	14395	19615	19615					0.0690320013713972
IEKLQTTLYL	10	Unmodified	_IEKLQTTLYL_					0	0	0			REV__tr|A0A7D6VS84|A0A7D6VS84_9CLOTFerrousirontransportproteinBOS=ClostridiumintestinaleOX=36845GN=feoBPE=3SV=1	REV__tr|A0A7D6VS84|A0A7D6VS84_9CLOTFerrousirontransportproteinBOS=ClostridiumintestinaleOX=36845GN=feoBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	611.35400390625	2	611.358096	1220.70164	-3.7398	-0.0022864	0.47754	0.00029195	-3.2623	-0.0019944	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.74374	1	15390	15390		25.574	1.3713	1	331570	+		17640	31477	14374	14396	19616	19616					0.1001169654291516
IEKLRTILL	9	Unmodified	_IEKLRTILL_					0	0	0			REV__nc|ENSG00000005700|Q9P2D0-2|IBTK	REV__nc|ENSG00000005700|Q9P2D0-2|IBTK	MULTI-SECPEP	OvCa9_classI_Rep3	3	549.8299560546875	2	549.865892	1097.71723	-1.4253	-0.00078371	0.83835	0.00046098	-0.58693	-0.00032273	549.8670329728765	82.508	0.44212	80.211	79.988	80.431	-2.2963					10	8	2	0	0	0	0.023563	1	4667	4667		176.09	0	1	44348	+		17641	24946	14375	14397	19617	19617					0.17228027850615035
IEKLRTILL	9	Unmodified	_IEKLRTILL_					0	0	0			REV__nc|ENSG00000005700|Q9P2D0-2|IBTK	REV__nc|ENSG00000005700|Q9P2D0-2|IBTK	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.830322265625	2	549.865892	1097.71723	-0.44167	-0.00024286	-3.1364	-0.0017246	-3.578	-0.0019674	549.8635572536551	83.075	0.5373	80.392	80.222	80.759	-2.6829					13	10	2	0	0	0	0.023563	1	6878	6878		176.09	0	1	36866	+		17642	24946	14375	14397	19618	19618					0.17228027850615035
IEKLSKRH	8	Unmodified	_IEKLSKRH_					0	0	0		ENSG00000135821|ENST00000331872|GLUL	ENSG00000135821|ENST00000331872|GLUL	ENSG00000135821|ENST00000331872|GLUL	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.8079528808594	2	505.808908	1009.60326	-0.82595	-0.00041777	0.65364	0.00033062	-0.17231	-8.7156E-05	505.80906827590786	39.991	1.2351	37.037	36.814	38.049	-2.9541					64	23	4	0	0	0	0.50674	1	1695	1695		76.847	2.5916	1	313630			17643	4417	14376	14398	19619	19619					0.098845578083683
IEKMERLL	8	Unmodified	_IEKMERLL_					0	0	0			REV__tr|A0A553SGN1|A0A553SGN1_NIACIadeninedeaminaseOS=NialliacirculansOX=1397GN=CEQ21_11155PE=3SV=1	REV__tr|A0A553SGN1|A0A553SGN1_NIACIadeninedeaminaseOS=NialliacirculansOX=1397GN=CEQ21_11155PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7928466796875	2	516.299527	1030.5845	1.1973	0.00061819	-3.7988	-0.0019613	-2.6014	-0.0013431	516.2970121841056	81.639	0.56916	81.639	81.572	82.141	0					20	13	2	0	0	0	0.028476	1	8495	8495		33.516	9.3128	1	708410	+		17644	29722	14377	14399	19620	19620					0.0704326012232741
IEKNHTAMVI	10	Unmodified	_IEKNHTAMVI_					0	0	0			REV__tr|A0A553SIX7|A0A553SIX7_NIACICelldivisionATP-bindingproteinFtsEOS=NialliacirculansOX=1397GN=ftsEPE=3SV=1	REV__tr|A0A553SIX7|A0A553SIX7_NIACICelldivisionATP-bindingproteinFtsEOS=NialliacirculansOX=1397GN=ftsEPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	578.310791015625	2	578.313166	1154.61178	-5.0394	-0.0029143	-0.026295	-1.5207E-05	-5.0657	-0.0029296	578.3129890075253	149.06	1.3548	148.11	147.7	149.05	-0.95119					72	26	4	0	0	0	0.69073	1	12596	12596		31.53	2.3803	1	213080	+		17645	29942	14378	14400	19621	19621					0.04065743662681598
IEKNLHEKVR	10	Unmodified	_IEKNLHEKVR_					0	0	0			REV__ENST00000573379.1_1_16:11036697-11036856:+|nuORF	REV__ENST00000573379.1_1_16:11036697-11036856:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.3704223632812	2	633.369861	1264.72517	-3.7067	-0.0023477	2.7994	0.0017731	-0.90726	-0.00057463	633.3714685413702	153.42	3.7144	151.96	150.68	154.4	-1.4516					273	94	4	0	0	0	0.79213	1	15131	15131		19.997	0.89325	1	395790	+		17646	27755	14379	14401	19622	19622					0.1033955510006308
IEKNTKLPF	9	Unmodified	_IEKNTKLPF_					0	0	0			REV__ENST00000459872.1_1_6:10557103-10619499:+|nuORF	REV__ENST00000459872.1_1_6:10557103-10619499:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3165893554688	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.68424	1	14447	14447		21.96	0	1	202430	+		17647	26068	14380	14402	19623	19623					0.08222889028456848
IEKPLISTHL	10	Unmodified	_IEKPLISTHL_					0	0	0			REV__nc|ENSG00000115520|Q9H8M1-2|COQ10B	REV__nc|ENSG00000115520|Q9H8M1-2|COQ10B	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8430786132812	2	575.845156	1149.67576	-4.018	-0.0023138	0.54994	0.00031668	-3.4681	-0.0019971	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.67931	1	12240	12240		32.812	3.6424	1	445630	+		17648	18249	14381	14403	19624	19624					0.10690847091291289
IEKPRMKF	8	Oxidation (M)	_IEKPRM(Oxidation (M))KF_		IEKPRM(1)KF		IEKPRM(60)KF	0	0	1			REV__ENSG00000255837|ENST00000538986|TAS2R20	REV__ENSG00000255837|ENST00000538986|TAS2R20	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.7965698242188	2	532.799694	1063.58484	-1.0811	-0.000576	-2.6683	-0.0014217	-3.7494	-0.0019977	532.7980414448721	116.58	1.2384	115.22	114.84	116.08	-1.3645					51	23	3	0	0	0	0.61841	1	10907	10907		60.118	10.677	1	276520	+		17649	23533	14382	14404	19625	19625		549			0.05558679842147285
IEKQINSYSK	10	Unmodified	_IEKQINSYSK_					0	0	0		tr|A0A553SQM5|A0A553SQM5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07820PE=4SV=1	tr|A0A553SQM5|A0A553SQM5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07820PE=4SV=1	tr|A0A553SQM5|A0A553SQM5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07820PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.21759033203125	3	403.88731	1208.6401	1.4345	0.00057937	-0.54156	-0.00021873	0.89292	0.00036064	403.88699936496573	46.508	0.47805	46.508	46.284	46.762	0					15	10	2	0	0	0	0.02698	1	3311	3311		16.53	0	1	335240			17650	34180	14383	14405	19626	19626					0.04412764843596051
IEKQKPTVF	9	Unmodified	_IEKQKPTVF_					0	0	0		tr|A0A553SK26|A0A553SK26_NIACILong-chainfattyacid--CoAligaseOS=NialliacirculansOX=1397GN=CEQ21_18005PE=4SV=1	tr|A0A553SK26|A0A553SK26_NIACILong-chainfattyacid--CoAligaseOS=NialliacirculansOX=1397GN=CEQ21_18005PE=4SV=1	tr|A0A553SK26|A0A553SK26_NIACILong-chainfattyacid--CoAligaseOS=NialliacirculansOX=1397GN=CEQ21_18005PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3164672851562	2	545.318774	1088.623	-2.8527	-0.0015556	-0.96726	-0.00052747	-3.8199	-0.0020831	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.53483	3	11970	11801;11927;11970		39.253	10.103	1	337600			17651	33570	14384	14406	19627;19628;19629	19629					0.08222889028479585
IEKQPPQVL	9	Unmodified	_IEKQPPQVL_					0	0	0		ENSG00000126561|ENST00000590949|STAT5A;nc|ENSG00000126561|P42229-2|STAT5A;ENST00000468312.1_1_17:40370167-40384145:-|nuORF;ENSG00000173757|ENST00000293328|STAT5B	ENSG00000126561|ENST00000590949|STAT5A;ENST00000468312.1_1_17:40370167-40384145:-|nuORF	ENSG00000126561|ENST00000590949|STAT5A	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.3114624023438	2	526.310949	1050.60735	-1.3706	-0.00072134	0.66229	0.00034857	-0.70828	-0.00037277	526.3112537321771	70.684	2.4762	67.202	66.836	69.312	-3.4812					79	50	2	0	0	0	0.029147	3	5353	5353;5366;5378		136.27	38.156	1	2198000			17652	3788;7411	14385	14407	19630;19631;19632	19630					0.08406602511445271
IEKQTAKGW	9	Unmodified	_IEKQTAKGW_					0	0	0			REV__nc|ENSG00000198947|P11532-3|DMD	REV__nc|ENSG00000198947|P11532-3|DMD	MULTI-MSMS	OvCa99_classI_Rep5	1	530.7997436523438	2	530.792924	1059.57129	2.5647	0.0013613	-0.46721	-0.00024799	2.0975	0.0011133	530.792615138408	115.75	1.0655	115.75	115.39	116.46	0					35	22	2	0	0	0	0.42676	1	13223	13223		49.442	0	1	472110	+		17653	23099	14386	14408	19633	19633					0.043891453345850096
IEKQTKLL	8	Unmodified	_IEKQTKLL_					0	0	0		ENSG00000120451|ENST00000265909|SNX19;ENST00000580193.1_1_18:14630000-14630792:-|nuORF;ENST00000444901.1_1_21:14899938-14900730:+|nuORF;ENST00000527451.1_1_11:130773148-130776010:-|nuORF	ENSG00000120451|ENST00000265909|SNX19	ENSG00000120451|ENST00000265909|SNX19	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.8097839355469	2	486.808042	971.601532	2.9731	0.0014473	1.0304	0.00050161	4.0035	0.0019489	486.80837264323793	130.6	1.3349	129.12	128.81	130.14	-1.478					69	27	4	0	0	0	0.65062	1	12526	12526		53.351	0	1	239820			17654	3431	14387	14409	19634	19634					0.11459503999765275
IEKRRGAQIQ	10	Unmodified	_IEKRRGAQIQ_					0	0	0		nc|ENSG00000163322|Q6UWZ7-2|ABRAXAS1;ENSG00000163322|ENST00000321945|ABRAXAS1	nc|ENSG00000163322|Q6UWZ7-2|ABRAXAS1	nc|ENSG00000163322|Q6UWZ7-2|ABRAXAS1	MULTI-SECPEP	OvCa9_classI_Rep3	3	599.3827514648438	2	599.854378	1197.6942	-4.9617	-0.0029763	2.4927	0.0014953	-2.4689	-0.001481	600.3580045336765	163.98	0.19373	162.59	162.46	162.66	-1.3925					5	3	2	0	0	0	0.026819	1	14313	14313		30.318	11.993	1	43135			17655	6287	14388	14410	19635	19635					0.10326401785846429
IEKSGYQALPW	11	Unmodified	_IEKSGYQALPW_					0	0	0		ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1;ENST00000592703.1_1_19:16344886-16345243:+|nuORF;ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2	ENSG00000072958|ENST00000291439|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	MULTI-SECPEP	OvCa99_classI_Rep5	1	645.8462524414062	2	646.337695	1290.66084	0.35414	0.00022889	2.7755	0.0017939	3.1297	0.0020228	646.3395960817193	62.357	0.87719	62.357	61.784	62.661	0					35	20	3	0	0	0	0.025638	1	5546	5546		23.523	0	1	2254900			17656	1484	14389	14411	19636	19636					0.02713355223295366
IEKSHIDQR	9	Unmodified	_IEKSHIDQR_					0	0	0		nc|ENSG00000174332|Q8NBF1|GLIS1;GLIS1|p.P583Sfs*9|1|0.27|ENSG00000174332|chr1:53506735-53506736|-/AACGGGAAGA|frameshift_variant;ENSG00000174332|ENST00000628545|GLIS1	nc|ENSG00000174332|Q8NBF1|GLIS1	nc|ENSG00000174332|Q8NBF1|GLIS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.311279296875	2	563.304187	1124.59382	2.2154	0.001248	4.3158	0.0024311	6.5312	0.003679	563.3064885002203	34.81	1.0034	32.022	31.747	32.751	-2.7881					34	19	2	0	0	0	0.60342	1	1060	1060		31.53	3.4483	1	99483			17657	7457	14390	14412	19637	19637					0.036507447321810105
IEKSHIDQR	9	Unmodified	_IEKSHIDQR_					0	0	0		nc|ENSG00000174332|Q8NBF1|GLIS1;GLIS1|p.P583Sfs*9|1|0.27|ENSG00000174332|chr1:53506735-53506736|-/AACGGGAAGA|frameshift_variant;ENSG00000174332|ENST00000628545|GLIS1	nc|ENSG00000174332|Q8NBF1|GLIS1	nc|ENSG00000174332|Q8NBF1|GLIS1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	563.304187	1124.59382	0.52811	0.00029749	-0.66134	-0.00037254	-0.13323	-7.505E-05	563.3037435870815	31.981	0.89361	31.981	31.757	32.651	0	-0.020745	-0.0042181	NaN	31.53	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	493700			17658	7457	14390	14412							0.036507447321810105
IEKSIKFY	8	Unmodified	_IEKSIKFY_					0	0	0			REV__tr|A0A7D6VR99|A0A7D6VR99_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_01495PE=3SV=1	REV__tr|A0A7D6VR99|A0A7D6VR99_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_01495PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.833740234375	2	514.294768	1026.57498	2.1903	0.0011265	-0.36413	-0.00018727	1.8262	0.00093921	514.2940486437071	84.246	0.37877	84.246	84.009	84.388	0					16	8	3	0	0	0	0.028476	1	8777	8777		33.516	0	1	186660	+		17659	31397	14391	14413	19638	19638					0.0627581510843811
IEKSVSEAL	9	Unmodified	_IEKSVSEAL_					0	0	0		ENSG00000271601|ENST00000604000|LIX1L	ENSG00000271601|ENST00000604000|LIX1L	ENSG00000271601|ENST00000604000|LIX1L	MULTI-MSMS	OvCa99_classI_Rep5	1	488.27374267578125	2	488.27149	974.528426	-0.69921	-0.0003414	-2.1132	-0.0010318	-2.8124	-0.0013732	488.2714990782702	61.549	1.2644	61.549	61.113	62.378	0					57	29	4	0	0	0	0.1944	1	5430	5430		77.318	13.11	1	4115900			17660	9548	14392	14414	19639	19639					0.0401433048649551
IEKSVSEAL	9	Unmodified	_IEKSVSEAL_					0	0	0		ENSG00000271601|ENST00000604000|LIX1L	ENSG00000271601|ENST00000604000|LIX1L	ENSG00000271601|ENST00000604000|LIX1L	MSMS	OvCa9_classI_Rep4_	4	488.2718200683594	2	488.27149	974.528426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.176	1	61.691	61.191	62.191	-3.4854								0	0	0	0.025959	1	4676	4676		104.06	27.283	1				17661	9548	14392	14414	19640	19640					0.0401433048649551
IEKSVSEAL	9	Unmodified	_IEKSVSEAL_					0	0	0		ENSG00000271601|ENST00000604000|LIX1L	ENSG00000271601|ENST00000604000|LIX1L	ENSG00000271601|ENST00000604000|LIX1L	MSMS	OvCa9_classI_Rep4_	4	488.2724914550781	2	488.27149	974.528426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.273	1	61.788	61.288	62.288	-3.4854								0	0	0	0.043201	1	4688	4688		79.713	12.219	1				17662	9548	14392	14414	19641	19641					0.0401433048649551
IEKVEHSDL	9	Unmodified	_IEKVEHSDL_					0	0	0		ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.2799682617188	2	535.279846	1068.54514	-0.79464	-0.00042536	0.55422	0.00029666	-0.24042	-0.00012869	535.2799051612021	47.629	1.8944	44.521	44.287	46.181	-3.1077					100	36	4	0	0	0	0.22035	1	2585	2585		72.879	1.0018	1	417800			17663	6703	14393	14415	19642	19642					0.013608313724262189
IELAQELLVI	10	Unmodified	_IELAQELLVI_					0	0	0		ENSG00000146205|ENST00000674324|ANO7;nc|ENSG00000146205|Q6IWH7-3|ANO7;nc|ENSG00000146205|Q6IWH7|ANO7	ENSG00000146205|ENST00000674324|ANO7	ENSG00000146205|ENST00000674324|ANO7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	571.8069458007812	2	570.847364	1139.68018	-0.1577	-9.0023E-05	-3.3926	-0.0019367	-3.5503	-0.0020267	570.845406094121	90.892	0.51466	88.317	88.11	88.624	-2.575					14	9	2	0	0	0	0.026931	1	7825	7825		37.812	12.237	1	15040			17664	5272	14394	14416	19643	19643					0.11592311514186804
IELCRIIPT	9	Unmodified	_IELCRIIPT_					0	0	0			REV__tr|A0A7D6VNY2|A0A7D6VNY2_9CLOTTypeIIsecretionsystemFfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20245PE=3SV=1	REV__tr|A0A7D6VNY2|A0A7D6VNY2_9CLOTTypeIIsecretionsystemFfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20245PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.752197265625	2	529.307352	1056.60015	2.2757	0.0012045	2.3223	0.0012292	4.598	0.0024338	529.310254138824	98.768	1.0267	98.768	98.461	99.488	0					48	24	3	0	0	0	0.027447	1	10901	10901		56.721	0	1	3714600	+		17665	31212	14395	14417	19644	19644					0.074115466393323
IELEDVLIESK	11	Unmodified	_IELEDVLIESK_					0	0	0			REV__tr|A0A7D6VTB3|A0A7D6VTB3_9CLOTendopeptidaseLaOS=ClostridiumintestinaleOX=36845GN=HZF06_16610PE=3SV=1	REV__tr|A0A7D6VTB3|A0A7D6VTB3_9CLOTendopeptidaseLaOS=ClostridiumintestinaleOX=36845GN=HZF06_16610PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	644.3495483398438	2	644.355751	1286.69695	-6.1065	-0.0039348	-3.1542	-0.0020324	-9.2607	-0.0059672	644.3535517231257	156.22	1.1461	155.15	154.82	155.96	-1.073					70	25	4	0	0	0	0.67529	1	13465	13465		37.812	12.237	1	162170	+		17666	31590	14396	14418	19645	19645					0.06506767609494091
IELEYEKKL	9	Unmodified	_IELEYEKKL_					0	0	0			REV__ENSG00000205002|ENST00000378279|AARD	REV__ENSG00000205002|ENST00000378279|AARD	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.2847290039062	2	582.829172	1163.64379	2.1458	0.0012506	4.4173	0.0025745	6.5631	0.0038251	582.8316092614547	94.84	0.38544	94.84	94.648	95.033	0					11	8	2	0	0	0	0.027447	1	10309	10309		47.657	5.2612	1	191960	+		17667	23198	14397	14419	19646	19646					0.06851434617465202
IELFAIMLI	9	Unmodified	_IELFAIMLI_					0	0	0			REV__tr|A0A7D6VTL2|A0A7D6VTL2_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11425PE=4SV=1	REV__tr|A0A7D6VTL2|A0A7D6VTL2_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11425PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.819091796875	2	531.817021	1061.61949	0.089047	4.7357E-05	-0.13274	-7.0593E-05	-0.043692	-2.3236E-05	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.52083	1	13565	13565		40.573	4.9543	1	263230	+		17668	31613	14398	14420	19647	19647					0.09114502930242452
IELGLDKLL	9	Unmodified	_IELGLDKLL_					0	0	0			REV__ENSG00000112852|ENST00000194155|PCDHB2	REV__ENSG00000112852|ENST00000194155|PCDHB2	MULTI-MSMS	OvCa9_classI_Rep3	3	507.3150939941406	2	507.3157	1012.61685	-0.96298	-0.00048854	0.6153	0.00031215	-0.34769	-0.00017639	507.3158623915197	117.79	1.8845	116.76	116.44	118.32	-1.0324					99	37	4	0	0	0	0.33652	1	8849	8849		58.782	2.0609	1	576140	+		17669	18122	14399	14421	19648	19648					0.11104370796954299
IELHLFMLN	9	Unmodified	_IELHLFMLN_					0	0	0		ENSG00000197147|ENST00000330947|LRRC8B	ENSG00000197147|ENST00000330947|LRRC8B	ENSG00000197147|ENST00000330947|LRRC8B	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.3651733398438	2	565.307352	1128.60015	2.8347	0.0016025	-2.9838	-0.0016868	-0.14916	-8.4323E-05	565.3054723231043	94.606	0.64401	94.606	94.348	94.992	0					35	14	4	0	0	0	0.027462	1	10280	10280		11.511	0	1	1307700			17670	8683	14400	14422	19649	19649					0.04099546639349683
IELIKLKT	8	Unmodified	_IELIKLKT_					0	0	0			REV__ENSG00000096433|ENST00000605930|ITPR3	REV__ENSG00000096433|ENST00000605930|ITPR3	MULTI-SECPEP	OvCa9_classI_Rep3	3	480.27789306640625	2	479.320786	956.627018	-0.46201	-0.00022145	0.49599	0.00023774	0.033985	1.629E-05	479.3208298528207	91.342	0.55504	89.318	89.079	89.634	-2.0241					16	10	2	0	0	0	0.028476	1	5755	5755		38.806	0	1	14396	+		17671	17307	14401	14423	19650	19650					0.14696978522192694
IELKRQELSYQ	11	Unmodified	_IELKRQELSYQ_					0	0	0		ENSG00000167117|ENST00000450727|ANKRD40CL	ENSG00000167117|ENST00000450727|ANKRD40CL	ENSG00000167117|ENST00000450727|ANKRD40CL	MULTI-MSMS	OvCa99_classI_Rep5	1	469.593505859375	3	469.592786	1405.75653	-0.27722	-0.00013018	-0.32335	-0.00015184	-0.60057	-0.00028202	469.5927070200878	48.629	2.875	48.629	48.332	51.207	0					171	65	5	0	0	0	0.38584	1	3636	3636		62.166	6.4451	1	21838000			17672	6758	14402	14424	19651	19651					0.06988083343526341
IELLAEYQLK	10	Unmodified	_IELLAEYQLK_					0	0	0			REV__tr|A0A553STQ7|A0A553STQ7_NIACISugarphosphateisomerase/epimeraseOS=NialliacirculansOX=1397GN=CEQ21_05565PE=4SV=1	REV__tr|A0A553STQ7|A0A553STQ7_NIACISugarphosphateisomerase/epimeraseOS=NialliacirculansOX=1397GN=CEQ21_05565PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	407.237060546875	3	407.23594	1218.68599	1.2553	0.0005112	-0.078932	-3.2144E-05	1.1764	0.00047906	407.23582197298515	57.088	1.197	57.088	56.662	57.859	0					53	27	4	0	0	0	0.39718	1	4772	4772		68.846	0	1	1326900	+		17673	30998	14403	14425	19652	19652					0.08539410025832694
IELLEKIVL	9	Unmodified	_IELLEKIVL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000070371|ENST00000427926|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa99_classI_Rep5	1	535.3477172851562	2	535.347	1068.67945	0.89011	0.00047652	0.84078	0.00045011	1.7309	0.00092663	535.3473648219193	132.25	2.5764	132.25	131.85	134.43	0					153	54	5	0	0	0	0.010478	9	15351	15351;15375;15401;15424;15448;15473;15503;15534;15570		167.23	57.109	1	6677400			17674	4906;1426	14404	14426	19653;19654;19655;19656;19657;19658;19659;19660;19661	19653					0.14785516865117643
IELLLPKL	8	Unmodified	_IELLLPKL_					0	0	0		nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;STAT2|p.V424Dfs*116|1|0.05|ENSG00000170581|chr12:56349496-56349497|-/GAGTGGGATCTATGGATGTCTGGTAGAT|frameshift_variant;ENST00000557156.1_1_12:56748248-56748633:-|nuORF	nc|ENSG00000170581|P52630-4|STAT2	nc|ENSG00000170581|P52630-4|STAT2	MULTI-MSMS	OvCa9_classI_Rep2	2	469.81695556640625	2	469.817879	937.621205	0.87275	0.00041003	-0.75105	-0.00035286	0.1217	5.7177E-05	469.8173779893202	129.72	2.0809	129.49	129.22	131.3	-0.22696					76	41	3	0	0	0	0.34187	9	12748	12731;12736;12742;12748;12753;12760;12766;12780;12791		99.375	17.07	1	247220			17675	7120	14405	14427	19662;19663;19664;19665;19666;19667;19668;19669;19670	19665					0.14989880010500656
IELLLPKL	8	Unmodified	_IELLLPKL_					0	0	0		nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;STAT2|p.V424Dfs*116|1|0.05|ENSG00000170581|chr12:56349496-56349497|-/GAGTGGGATCTATGGATGTCTGGTAGAT|frameshift_variant;ENST00000557156.1_1_12:56748248-56748633:-|nuORF	nc|ENSG00000170581|P52630-4|STAT2	nc|ENSG00000170581|P52630-4|STAT2	MULTI-MSMS	OvCa9_classI_Rep4_	4	469.8172607421875	2	469.817879	937.621205	3.936	0.0018492	-4.0113	-0.0018846	-0.075315	-3.5384E-05	469.8158656437192	131	2.0057	129.52	129.26	131.26	-1.4779					80	40	3	0	0	0	0.40148	6	12591	12568;12579;12591;12603;12628;12648		87.754	10.955	1	330890			17676	7120	14405	14427	19671;19672;19673;19674;19675;19676	19673					0.14989880010500656
IELLLPKL	8	Unmodified	_IELLLPKL_					0	0	0		nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;STAT2|p.V424Dfs*116|1|0.05|ENSG00000170581|chr12:56349496-56349497|-/GAGTGGGATCTATGGATGTCTGGTAGAT|frameshift_variant;ENST00000557156.1_1_12:56748248-56748633:-|nuORF	nc|ENSG00000170581|P52630-4|STAT2	nc|ENSG00000170581|P52630-4|STAT2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	469.817879	937.621205	0.61223	0.00028764	-0.62531	-0.00029378	-0.013074	-6.1425E-06	469.8174731281552	130.74	1.7228	129.62	129.32	131.04	-1.1249	0.072588	0.00088469	NaN	99.375	67	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161820			17677	7120	14405	14427							0.14989880010500656
IELLPRKGP	9	Unmodified	_IELLPRKGP_					0	0	0		TATDN1-RNF139|1|fusion;ENSG00000170881|ENST00000303545|RNF139	TATDN1-RNF139|1|fusion	TATDN1-RNF139|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	512.78759765625	2	511.821484	1021.62842	0.12323	6.3071E-05	-0.77451	-0.00039641	-0.65128	-0.00033334	511.82106067773816	107.93	1.764	107.7	107.2	108.96	-0.22498					58	35	2	0	0	0	0.027462	1	10129	10129		35.618	20.753	1	132620			17678	7147	14406	14428	19677	19677					0.11846612610952434
IELPFKDI	8	Unmodified	_IELPFKDI_					0	0	0		nc|ENSG00000101251|Q5TEA6-2|SEL1L2	nc|ENSG00000101251|Q5TEA6-2|SEL1L2	nc|ENSG00000101251|Q5TEA6-2|SEL1L2	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.7693176269531	2	487.781493	973.548434	-0.24841	-0.00012117	-4.3649	-0.0021291	-4.6133	-0.0022503	487.77924846679616	56.559	0.53294	56.559	56.3	56.833	0					32	12	3	0	0	0	0.028476	1	4699	4699		33.516	1.5607	1	1007400			17679	14929	14407	14429	19678	19678					0.06060126217084871
IELPLTVYN	9	Unmodified	_IELPLTVYN_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A;POLR1A|p.I816Afs*8|1|0.08|ENSG00000068654|chr2:86049190-86049191|-/GTGGGGATAAATGCATGCA|frameshift_variant;POLR1A|p.E867Afs*9|1|0.15|ENSG00000068654|chr2:86048918-86048919|-/G|frameshift_variant;ENST00000486964.5_1_2:86305209-86332944:-|nuORF	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-SECPEP	OvCa9_classI_Rep2	2	531.7819213867188	2	531.297507	1060.58046	-1.5521	-0.00082464	-2.2531	-0.001197	-3.8052	-0.0020217	531.296397330355	48.198	0.89438	45.489	44.935	45.829	-2.7097					24	17	2	0	0	0	0.027447	1	2925	2925		31.53	0	1	34530			17680	1394	14408	14430	19679	19679					0.05259493900257439
IELPNIQKV	9	Unmodified	_IELPNIQKV_					0	0	0		ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;USP11|p.E403Gfs*17|1|0.07|ENSG00000102226|chrX:47241599-47241599|A/-|frameshift_variant	ENST00000469080.5_1_X:47092634-47106681:+|nuORF	ENST00000469080.5_1_X:47092634-47106681:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.3193359375	2	527.318774	1052.623	-1.1508	-0.00060682	0.26554	0.00014002	-0.88522	-0.00046679	527.318749635135	101.63	0.69221	99.359	99.02	99.712	-2.2665					34	13	3	0	0	0	0.13504	2	9136	9125;9136		87.696	5.4559	1	239460			17681	2230	14409	14431	19680;19681	19681					0.09878889028482263
IELPNIQKV	9	Unmodified	_IELPNIQKV_					0	0	0		ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;USP11|p.E403Gfs*17|1|0.07|ENSG00000102226|chrX:47241599-47241599|A/-|frameshift_variant	ENST00000469080.5_1_X:47092634-47106681:+|nuORF	ENST00000469080.5_1_X:47092634-47106681:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	527.318774	1052.623	-1.4268	-0.00075238	1.1724	0.00061821	-0.25444	-0.00013417	527.319250662169	100.99	0.71796	99.388	99.043	99.761	-1.6053	-0.066469	0.00025689	NaN	87.696	33	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	264850			17682	2230	14409	14431							0.09878889028482263
IELQLPGLEL	10	Unmodified	_IELQLPGLEL_					0	0	0			REV__ENSG00000171467|ENST00000361428|ZNF318	REV__ENSG00000171467|ENST00000361428|ZNF318	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.2921142578125	2	562.831714	1123.64888	1.8061	0.0010165	1.597	0.00089883	3.4031	0.0019154	562.832458997031	98.371	0.55974	98.371	98.079	98.638	0					18	12	2	0	0	0	0.02658	1	10826	10826		30.318	11.214	1	254750	+		17683	21615	14410	14432	19682	19682					0.09199738480083397
IELTVPTK	8	Unmodified	_IELTVPTK_					0	0	0			REV__ENST00000373382.5_1_10:70931026-70931143:+|nuORF	REV__ENST00000373382.5_1_10:70931026-70931143:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	451.2664794921875	2	450.773668	899.532783	-0.28367	-0.00012787	3.9572	0.0017838	3.6735	0.0016559	450.7755667235945	37.784	0.23042	37.784	37.621	37.851	0					7	4	2	0	0	0	0.028476	1	2086	2086		11.511	0	1	52277	+		17684	25039	14411	14433	19683	19683					0.07899839700053235
IELVDRGLV	9	Unmodified	_IELVDRGLV_					0	0	0		ENSG00000176055|ENST00000316610|MBLAC2	ENSG00000176055|ENST00000316610|MBLAC2	ENSG00000176055|ENST00000316610|MBLAC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3152160644531	2	507.303124	1012.5917	-0.79888	-0.00040528	1.4656	0.00074352	0.66675	0.00033824	507.30309704320064	106.19	0.61215	104.17	103.7	104.31	-2.0161					13	11	2	0	0	0	0.027418	1	9611	9611		68.787	19.345	1	16498			17685	7579	14412	14434	19684	19684					0.0859031599438822
IELVDRGLV	9	Unmodified	_IELVDRGLV_					0	0	0		ENSG00000176055|ENST00000316610|MBLAC2	ENSG00000176055|ENST00000316610|MBLAC2	ENSG00000176055|ENST00000316610|MBLAC2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	507.303124	1012.5917	-0.052238	-2.65E-05	1.6367	0.00083032	1.5845	0.00080382	507.30328822729484	105.42	0.51974	104.07	103.78	104.3	-1.3482	-0.052787	9.0502E-05	NaN	68.787	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22228			17686	7579	14412	14434							0.0859031599438822
IELVKLATHL	10	Unmodified	_IELVKLATHL_					0	0	0			REV__nc|ENSG00000148634|Q5GLZ8-6|HERC4	REV__nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-MSMS	OvCa9_classI_Rep2	2	568.8541259765625	2	568.855524	1135.69649	-5.375	-0.0030576	2.0179	0.0011479	-3.3571	-0.0019097	568.8565433281535	160.72	1.3933	160.5	160.18	161.57	-0.22696					89	27	5	0	0	0	0.69073	1	16371	16371		31.53	3.6476	1	747650	+		17687	28920	14413	14435	19685	19685					0.1340743747093711
IELYKPND	8	Unmodified	_IELYKPND_					0	0	0		nc|ENSG00000133135|Q8TEB7-2|RNF128;ENSG00000133135|ENST00000255499|RNF128	nc|ENSG00000133135|Q8TEB7-2|RNF128	nc|ENSG00000133135|Q8TEB7-2|RNF128	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.7911682128906	2	496.258382	990.502212	1.1127	0.0005522	3.9612	0.0019658	5.074	0.002518	496.2591531696326	79.108	0.32983	79.108	78.911	79.24	0					18	7	3	0	0	0	0.028476	1	8040	8040		23.042	1.0826	1	478790			17688	4208	14414	14436	19686	19686					0.00658061315004943
IEMFNASC	8	Unmodified	_IEMFNASC_					0	0	0		ENST00000549376.1_1_12:96384092-96386548:-|nuORF;ENST00000546999.5_1_12:96374470-96386548:-|nuORF;HAL|p.S379Rfs*10|1|0.04|ENSG00000084110|chr12:95986077-95986078|AT/-|frameshift_variant;nc|ENSG00000084110|P42357-3|HAL;nc|ENSG00000084110|P42357-2|HAL;ENSG00000084110|ENST00000261208|HAL	ENST00000549376.1_1_12:96384092-96386548:-|nuORF	ENST00000549376.1_1_12:96384092-96386548:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.7518615722656	2	457.690964	913.367374	0.29291	0.00013406	2.4187	0.001107	2.7116	0.0012411	457.69256355238264	60.649	1.1402	57.219	56.898	58.038	-3.43					38	22	3	0	0	0	0.028476	1	4138	4138		33.516	3.0119	1	64410			17689	1711	14415	14437	19687	19687					-0.09277458422764084
IEMHQRLS	8	Unmodified	_IEMHQRLS_					0	0	0		nc|ENSG00000149547|O14681-3|EI24;ENSG00000149547|ENST00000278903|EI24	nc|ENSG00000149547|O14681-3|EI24	nc|ENSG00000149547|O14681-3|EI24	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3153076171875	2	507.263476	1012.5124	-0.50121	-0.00025424	-4.1968	-0.0021289	-4.698	-0.0023831	507.2612900641531	105.17	1.3615	103.16	102.79	104.16	-2.0161					52	26	3	0	0	0	0.028476	1	9598	9598		85.359	14.064	1	186760			17690	5470	14416	14438	19688	19688					0.006643457685981957
IEMHQRLS	8	Unmodified	_IEMHQRLS_					0	0	0		nc|ENSG00000149547|O14681-3|EI24;ENSG00000149547|ENST00000278903|EI24	nc|ENSG00000149547|O14681-3|EI24	nc|ENSG00000149547|O14681-3|EI24	MULTI-MATCH	OvCa9_classI_Rep2	2		2	507.263476	1012.5124	-1.121	-0.00056862	-4.055	-0.002057	-5.176	-0.0026256	507.26137578776365	103.43	0.54297	102.75	102.43	102.97	-0.68459	-0.2378	0.00013302	NaN	85.359	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49358			17691	5470	14416	14438							0.006643457685981957
IEMHQRLS	8	Unmodified	_IEMHQRLS_					0	0	0		nc|ENSG00000149547|O14681-3|EI24;ENSG00000149547|ENST00000278903|EI24	nc|ENSG00000149547|O14681-3|EI24	nc|ENSG00000149547|O14681-3|EI24	MULTI-MATCH	OvCa9_classI_Rep3	3		2	507.263476	1012.5124	-0.096449	-4.8925E-05	-4.8046	-0.0024372	-4.901	-0.0024861	507.2610434953267	104.49	1.2997	103.05	102.76	104.06	-1.4347	0.066344	-0.0006274	NaN	85.359	50	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198840			17692	5470	14416	14438							0.006643457685981957
IEMIGIKHHSS	11	Unmodified	_IEMIGIKHHSS_					0	0	0			REV__ENST00000215770.5_1_22:24314019-24314391:+|nuORF	REV__ENST00000215770.5_1_22:24314019-24314391:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	418.21368408203125	3	417.888657	1250.64414	-0.22916	-9.5764E-05	2.5513	0.0010662	2.3222	0.00097041	417.88980977921636	26.066	0.39881	26.066	25.843	26.242	0					18	7	3	0	0	0	0.026189	1	625	625		26.063	2.5407	1	164340	+		17693	23710	14417	14439	19689	19689					0.028845310656834044
IEMITEKKN	9	Oxidation (M)	_IEM(Oxidation (M))ITEKKN_		IEM(1)ITEKKN		IEM(160)ITEKKN	0	0	1			REV__tr|A0A553STJ6|A0A553STJ6_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04990PE=4SV=1	REV__tr|A0A553STJ6|A0A553STJ6_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04990PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	561.2962646484375	2	561.297181	1120.57981	0.18473	0.00010369	-3.8975	-0.0021877	-3.7128	-0.002084	561.2950986837145	104.69	0.89832	104.69	104.24	105.13	0					48	20	4	0	0	0	0.012051	1	11743	11743		162.25	15.467	1	1975200	+		17694	30974	14418	14440	19690	19690		685			0.024343311888969765
IEMITEKKN	9	Oxidation (M)	_IEM(Oxidation (M))ITEKKN_					0	0	1			REV__tr|A0A553STJ6|A0A553STJ6_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04990PE=4SV=1	REV__tr|A0A553STJ6|A0A553STJ6_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04990PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	561.297181	1120.57981	0.18473	0.00010369	-3.8975	-0.0021877	-3.7128	-0.002084	561.2950986837145	104.69	0.89832	104.69	104.24	105.13	0	0	0	NaN	162.25	48	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1975200	+		17695	30974	14418	14440				685			0.024343311888969765
IEMKKFIS	8	Unmodified	_IEMKKFIS_					0	0	0			REV__ENST00000458611.1_1_7:107207526-107208220:+|nuORF	REV__ENST00000458611.1_1_7:107207526-107208220:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.7471008300781	2	498.283346	994.552139	1.6566	0.00082545	-2.874	-0.0014321	-1.2174	-0.00060661	498.2816790136041	122.63	0.64179	122.63	122.36	123	0					22	13	2	0	0	0	0.028476	1	14116	14116		38.806	0	1	73578	+		17696	26060	14419	14441	19691	19691					0.05464472719313562
IEMPCAFRA	9	Unmodified	_IEMPCAFRA_					0	0	0		ENSG00000187135|ENST00000335523|VSTM2B	ENSG00000187135|ENST00000335523|VSTM2B	ENSG00000187135|ENST00000335523|VSTM2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.7626342773438	2	519.24898	1036.48341	-1.3408	-0.0006962	0.070616	3.6667E-05	-1.2702	-0.00065953	519.2510248044167	44.275	0.88594	44.275	43.909	44.795	0					28	19	2	0	0	0	0.027462	1	2938	2938		31.955	11.958	1	148200			17697	8389	14420	14442	19692	19692					-0.033375148520690345
IEMVILKLP	9	Unmodified	_IEMVILKLP_					0	0	0		L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|38|1|sense	L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|38|1|sense	L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|38|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.2609252929688	2	528.330296	1054.64604	-0.73842	-0.00039013	3.797	0.002006	3.0585	0.0016159	528.3320575574883	68.282	0.64767	68.282	67.916	68.564	0					33	14	3	0	0	0	0.027462	1	6466	6466		12.207	0	1	975660			17698	14785	14421	14443	19693	19693					0.12090191821584995
IENDKKVSVV	10	Unmodified	_IENDKKVSVV_					0	0	0		tr|A0A7D6ZUE5|A0A7D6ZUE5_9CLOTNAD(P)/FAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23815PE=4SV=1	tr|A0A7D6ZUE5|A0A7D6ZUE5_9CLOTNAD(P)/FAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23815PE=4SV=1	tr|A0A7D6ZUE5|A0A7D6ZUE5_9CLOTNAD(P)/FAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23815PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.261962890625	2	565.824421	1129.63429	1.6125	0.0009124	-2.0555	-0.001163	-0.44298	-0.00025065	565.8233247690848	109.12	1.159	109.12	109.02	110.18	0					41	25	2	0	0	0	0.026849	1	12413	12413		40.778	0	1	419780			17699	35773	14422	14444	19694	19694					0.07465666331927423
IENELEGFGI	10	Unmodified	_IENELEGFGI_					0	0	0		ENSG00000185721|ENST00000331457|DRG1;ENST00000433341.5_1_22:31795606-31819296:+|nuORF;ENST00000416465.5_1_22:31796666-31819296:+|nuORF	ENSG00000185721|ENST00000331457|DRG1	ENSG00000185721|ENST00000331457|DRG1	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.278076171875	2	560.779679	1119.5448	-0.056953	-3.1938E-05	3.8654	0.0021676	3.8084	0.0021357	560.781461500394	36.012	2.8249	36.012	35.661	38.486	0					103	61	4	0	0	0	0.026659	1	2077	2077		45.972	0	1	245620			17700	8275	14423	14445	19695	19695					-0.01018588347392324
IENFHQII	8	Unmodified	_IENFHQII_					0	0	0			REV__tr|A0A7D7A5L2|A0A7D7A5L2_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06535PE=4SV=1	REV__tr|A0A7D7A5L2|A0A7D7A5L2_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06535PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.8133239746094	2	507.274367	1012.53418	-0.21285	-0.00010797	0.76702	0.00038909	0.55417	0.00028111	507.27453535471994	107.31	1.1212	107	106.57	107.69	-0.30837					68	22	4	0	0	0	0.028476	1	10096	10096		47.916	15.103	1	238200	+		17701	32639	14424	14446	19696	19696					0.02841473788816984
IENKPIRME	9	Unmodified	_IENKPIRME_					0	0	0			REV__ENST00000518311.2_1_8:47491787-47501718:-|nuORF	REV__ENST00000518311.2_1_8:47491787-47501718:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	565.3091430664062	2	565.305341	1128.59613	0.20208	0.00011423	4.1316	0.0023356	4.3337	0.0024499	565.3076159501649	96.83	2.3607	95.871	95.481	97.841	-0.95857					161	47	5	0	0	0	0.064985	1	8730	8730		110.12	19.75	1	3204400	+		17702	27029	14425	14447	19697	19697					0.03697457145653971
IENKTYTK	8	Unmodified	_IENKTYTK_					0	0	0		ENST00000510312.6_1_5:73178320-73193923:+|nuORF;nc|ENSG00000214944|Q8N1W1-5|ARHGEF28;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28	ENST00000510312.6_1_5:73178320-73193923:+|nuORF	ENST00000510312.6_1_5:73178320-73193923:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.33099365234375	2	498.771657	995.528761	1.8654	0.00093042	0.17924	8.94E-05	2.0447	0.0010198	498.7715845757332	82.037	0.86609	82.037	81.613	82.479	0					38	20	3	0	0	0	0.028476	1	8496	8496		21.96	0	1	1623800			17703	9191	14426	14448	19698	19698					0.03081750206331435
IENKWYIVS	9	Unmodified	_IENKWYIVS_					0	0	0			REV__tr|A0A553SNG7|A0A553SNG7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24465PE=4SV=1	REV__tr|A0A553SNG7|A0A553SNG7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24465PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.3267211914062	2	576.308406	1150.60226	0.653	0.00037633	3.0529	0.0017594	3.7059	0.0021358	576.3096223257584	151.21	0.30605	151.21	151.04	151.35	0					7	5	2	0	0	0	0.027462	1	17687	17687		16.473	3.6614	1	40969	+		17704	30423	14427	14449	19699	19699					0.03298298648792297
IENLGISI	8	Unmodified	_IENLGISI_					0	0	0			REV__tr|A0A7D6VMS2|A0A7D6VMS2_9CLOTHistidinol-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_12945PE=3SV=1	REV__tr|A0A7D6VMS2|A0A7D6VMS2_9CLOTHistidinol-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_12945PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	429.7511291503906	2	429.750193	857.485833	1.5434	0.00066328	0.078055	3.3544E-05	1.6215	0.00069683	429.75020817083106	119.59	0.38068	119.59	119.5	119.88	0					15	9	2	0	0	0	0.48084	1	13738	13738		79.451	0	1	164570	+		17705	31146	14428	14450	19700	19700					0.05138980148910832
IENNEDYN	8	Unmodified	_IENNEDYN_					0	0	0			REV__tr|A0A7D6VLZ3|A0A7D6VLZ3_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13340PE=4SV=1	REV__tr|A0A7D6VLZ3|A0A7D6VLZ3_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13340PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.2464904785156	2	505.706711	1009.39887	2.1115	0.0010678	-0.1156	-5.846E-05	1.9959	0.0010093	505.7065317719268	95.361	0.24911	95.361	95.161	95.41	0					10	5	2	0	0	0	0.028476	1	10404	10404		79.451	0	1	126210	+		17706	31120	14429	14451	19701	19701					-0.10545470863473838
IENNERVI	8	Unmodified	_IENNERVI_					0	0	0		nc|ENSG00000166006|Q96PR1-4|KCNC2;nc|ENSG00000166006|Q96PR1-5|KCNC2;nc|ENSG00000166006|Q96PR1-3|KCNC2;nc|ENSG00000166006|Q96PR1-6|KCNC2;nc|ENSG00000166006|Q96PR1-2|KCNC2;ENSG00000166006|ENST00000549446|KCNC2	nc|ENSG00000166006|Q96PR1-4|KCNC2	nc|ENSG00000166006|Q96PR1-4|KCNC2	MULTI-MSMS	OvCa99_classI_Rep5	1	493.7677001953125	2	493.766906	985.519259	-0.34455	-0.00017013	-0.03518	-1.7371E-05	-0.37974	-0.0001875	493.76709506077066	63.641	0.99714	63.641	63.337	64.334	0					54	24	3	0	0	0	0.53252	1	5752	5752		74.255	0.28031	1	6905500			17707	15153	14430	14452	19702	19702					0.025919819208070294
IENNHILYL	9	Unmodified	_IENNHILYL_					0	0	0		nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9;ENST00000489652.1_1_3:122255723-122264321:-|nuORF	nc|ENSG00000138496|Q8IXQ6-3|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	MULTI-MSMS	OvCa9_classI_Rep2	2	564.8043212890625	2	564.806031	1127.59751	-0.6708	-0.00037887	1.0893	0.00061522	0.41845	0.00023634	564.8065459691159	99.395	2.9276	98.564	97.919	100.85	-0.83052					122	58	4	0	0	0	0.083631	3	9065	9055;9059;9065		101.6	26.163	1	405350			17708	4692	14431	14453	19703;19704;19705	19705					0.038814145060541705
IENNHILYL	9	Unmodified	_IENNHILYL_					0	0	0		nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9;ENST00000489652.1_1_3:122255723-122264321:-|nuORF	nc|ENSG00000138496|Q8IXQ6-3|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	MULTI-MSMS	OvCa9_classI_Rep3	3	564.8062133789062	2	564.806031	1127.59751	-0.90919	-0.00051352	0.5833	0.00032945	-0.32589	-0.00018407	564.8063205858946	100.34	2.2734	98.734	97.909	100.18	-1.6053					92	44	3	0	0	0	0.10363	4	6792	6786;6792;6798;6803		96.19	27.404	1	528660			17709	4692	14431	14453	19706;19707;19708;19709	19707					0.038814145060541705
IENNHILYL	9	Unmodified	_IENNHILYL_					0	0	0		nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9;ENST00000489652.1_1_3:122255723-122264321:-|nuORF	nc|ENSG00000138496|Q8IXQ6-3|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	MSMS	OvCa9_classI_Rep4_	4	564.8060302734375	2	564.806031	1127.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.73	1	98.465	97.965	98.965	-2.2665								0	0	0	0.17131	1	9018	9018		47.657	0	1				17710	4692	14431	14453	19710	19710					0.038814145060541705
IENNHILYL	9	Unmodified	_IENNHILYL_					0	0	0		nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9;ENST00000489652.1_1_3:122255723-122264321:-|nuORF	nc|ENSG00000138496|Q8IXQ6-3|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	MSMS	OvCa9_classI_Rep4_	4	564.8070678710938	2	564.806031	1127.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.81	1	98.548	98.048	99.048	-2.2665								0	0	0	0.094478	1	9027	9027		71.877	5.4482	1				17711	4692	14431	14453	19711	19711					0.038814145060541705
IENNHILYL	9	Unmodified	_IENNHILYL_					0	0	0		nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9;ENST00000489652.1_1_3:122255723-122264321:-|nuORF	nc|ENSG00000138496|Q8IXQ6-3|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	MSMS	OvCa9_classI_Rep4_	4	564.8076782226562	2	564.806031	1127.59751	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.91	1	98.648	98.148	99.148	-2.2665								0	0	0	0.17671	1	9039	9039		39.253	2.0937	1				17712	4692	14431	14453	19712	19712					0.038814145060541705
IENNSKNPV	9	Unmodified	_IENNSKNPV_					0	0	0			REV__ENSG00000123352|ENST00000552918|SPATS2	REV__ENSG00000123352|ENST00000552918|SPATS2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.81341552734375	2	507.764363	1013.51417	-0.4569	-0.000232	-3.8097	-0.0019345	-4.2666	-0.0021665	508.2648599832211	109.45	0.21065	107.72	107.63	107.84	-1.7256					6	2	3	0	0	0	0.027072	1	10058	10058		113.41	14.037	1	6198.8	+		17713	18635	14432	14454	19713	19713					0.007956780581935163
IENNSKNPV	9	Unmodified	_IENNSKNPV_					0	0	0			REV__ENSG00000123352|ENST00000552918|SPATS2	REV__ENSG00000123352|ENST00000552918|SPATS2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.81341552734375	2	507.764363	1013.51417	0.091489	4.6455E-05	4.0843	0.0020739	4.1758	0.0021203	507.7661774082947	109.72	1.1591	108.11	107.8	108.96	-1.6011					39	21	3	0	0	0	0.027072	1	10058	10058		113.41	14.037	1	90810	+		17714	18635	14432	14454	19714	19714					0.007956780581935163
IENNSRDRET	10	Unmodified	_IENNSRDRET_					0	0	0		ENST00000381312.5_1_10:1779465-1779666:-|nuORF	ENST00000381312.5_1_10:1779465-1779666:-|nuORF	ENST00000381312.5_1_10:1779465-1779666:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.8908996582031	3	411.865457	1232.57454	0.37869	0.00015597	-3.5142	-0.0014474	-3.1355	-0.0012914	411.86459189561583	59.764	0.22789	59.764	59.611	59.839	0					9	5	2	0	0	0	0.027006	1	5150	5150		24.232	4.2013	1	103320			17715	11163	14433	14455	19715	19715					-0.03244256349398711
IENSNVKLI	9	Unmodified	_IENSNVKLI_					0	0	0		tr|A0A7D6W1F1|A0A7D6W1F1_9CLOTUronateisomeraseOS=ClostridiumintestinaleOX=36845GN=uxaCPE=3SV=1	tr|A0A7D6W1F1|A0A7D6W1F1_9CLOTUronateisomeraseOS=ClostridiumintestinaleOX=36845GN=uxaCPE=3SV=1	tr|A0A7D6W1F1|A0A7D6W1F1_9CLOTUronateisomeraseOS=ClostridiumintestinaleOX=36845GN=uxaCPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.3023071289062	2	515.300581	1028.58661	2.0195	0.0010406	0.32167	0.00016576	2.3411	0.0012064	515.3006530445183	113.58	0.68157	113.58	113.38	114.06	0					31	16	3	0	0	0	0.1804	1	12947	12947		79.713	0	1	460500			17716	35409	14434	14456	19716	19716					0.07346012131779389
IENSRHYI	8	Unmodified	_IENSRHYI_					0	0	0		nc|ENSG00000075651|Q13393-4|PLD1;nc|ENSG00000075651|Q13393-2|PLD1;ENSG00000075651|ENST00000351298|PLD1;ENST00000471075.1_1_3:171371881-171395443:-|nuORF	nc|ENSG00000075651|Q13393-4|PLD1;ENST00000471075.1_1_3:171371881-171395443:-|nuORF	nc|ENSG00000075651|Q13393-4|PLD1	MULTI-SECPEP	OvCa9_classI_Rep2	2	516.2852172851562	2	516.267073	1030.51959	-0.51805	-0.00026745	-3.4838	-0.0017986	-4.0018	-0.002066	516.2651472905666	57.186	0.29758	54.394	54.278	54.576	-2.7921					6	5	2	0	0	0	0.028476	1	4060	4060		65.803	15.77	1	4754.6			17717	1538;12374	14435	14457	19717	19717					0.005554016406676965
IENSRIVL	8	Unmodified	_IENSRIVL_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19	CON__P08727	CON__P08727	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.282958984375	2	472.282192	942.549831	0.78754	0.00037194	-1.8239	-0.00086138	-1.0363	-0.00048944	472.2812786337472	78.198	2.098	75.381	74.681	76.779	-2.8165					93	43	4	0	0	0	0.28381	3	6289	6289;6303;6316		110.12	21.267	1	1273400		+	17718	625	14436	14458	19718;19719;19720	19718					0.0762576030585933
IENSTDNPD	9	Unmodified	_IENSTDNPD_					0	0	0		nc|ENSG00000064607|Q8IX01-4|SUGP2;nc|ENSG00000064607|Q8IX01-3|SUGP2;ENSG00000064607|ENST00000452918|SUGP2;ENST00000598240.1_1_19:19105804-19136912:-|nuORF	nc|ENSG00000064607|Q8IX01-4|SUGP2	nc|ENSG00000064607|Q8IX01-4|SUGP2	MULTI-MSMS	OvCa99_classI_Rep5	1	502.71319580078125	2	502.711993	1003.40943	-0.00023937	-1.2034E-07	0.68163	0.00034267	0.6814	0.00034255	502.7122254666475	57.06	0.64706	57.06	56.833	57.48	0					34	14	3	0	0	0	0.22621	1	4775	4775		71.877	9.7701	1	848440			17719	1301	14437	14459	19721	19721					-0.09213488209036313
IENTQTPK	8	Unmodified	_IENTQTPK_					0	0	0			REV__tr|A0A553SQT4|A0A553SQT4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07265PE=4SV=1	REV__tr|A0A553SQT4|A0A553SQT4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07265PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.2381286621094	2	465.748182	929.481811	-1.1486	-0.00053494	2.0022	0.00093252	0.85363	0.00039758	465.7492395675489	44.229	0.35685	41.222	41.088	41.444	-3.0074					10	6	2	0	0	0	0.028476	1	2177	2177		60.972	5.4677	1	15451	+		17720	30660	14438	14460	19722	19722					0.014248906551983964
IENTTLTL	8	Unmodified	_IENTTLTL_					0	0	0			REV__nc|ENSG00000066468|P21802-22|FGFR2	REV__nc|ENSG00000066468|P21802-22|FGFR2	MULTI-MSMS	OvCa9_classI_Rep4_	4	452.75372314453125	2	452.752933	903.491313	1.4494	0.00065622	-1.6058	-0.00072701	-0.15636	-7.0792E-05	452.7520983077927	68.123	2.4449	64.633	64.333	66.778	-3.4902					124	49	5	0	0	0	0.17531	1	5033	5033		128.86	11.958	1	1541100	+		17721	28724	14439	14461	19723	19723					0.035706589407254796
IENTTLTL	8	Unmodified	_IENTTLTL_					0	0	0			REV__nc|ENSG00000066468|P21802-22|FGFR2	REV__nc|ENSG00000066468|P21802-22|FGFR2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	452.752933	903.491313	1.2198	0.00055227	-1.1186	-0.00050646	0.10119	4.5815E-05	452.752231988583	67.429	1.9278	64.768	64.248	66.176	-2.661	0.067388	0.00020467	NaN	128.86	101	38	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327090	+		17722	28724	14439	14461							0.035706589407254796
IENVVRNIL	9	Unmodified	_IENVVRNIL_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L;SAMD9|p.E1289Dfs*17|1|0.04|ENSG00000205413|chr7:93102231-93102232|-/AG|frameshift_variant;ENSG00000205413|ENST00000379958|SAMD9	ENSG00000177409|ENST00000318238|SAMD9L;ENSG00000205413|ENST00000379958|SAMD9	ENSG00000177409|ENST00000318238|SAMD9L	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.319091796875	2	535.321848	1068.62914	-1.5159	-0.00081148	-0.72019	-0.00038553	-2.2361	-0.001197	535.3214127497267	101.27	1.5345	99.006	98.652	100.19	-2.2665					55	30	2	0	0	0	0.37182	1	9077	9077		54.722	1.7857	1	141770			17723	7677;9072	14440	14462	19724	19724					0.09757407259985484
IEPADAHVL	9	Unmodified	_IEPADAHVL_					0	0	0		ENSG00000121579|ENST00000240922|NAA50;nc|ENSG00000121579|Q9GZZ1-2|NAA50	ENSG00000121579|ENST00000240922|NAA50	ENSG00000121579|ENST00000240922|NAA50	MULTI-MSMS	OvCa99_classI_Rep5	1	482.7597961425781	2	482.758549	963.502546	2.5788	0.0012449	-0.28926	-0.00013965	2.2895	0.0011053	482.7583115906984	75.806	1.0742	75.806	75.444	76.518	0					77	26	4	0	0	0	0.11171	1	7566	7566		94.006	25.22	1	13757000			17724	3489	14441	14463	19725	19725					0.01933481034848228
IEPADAHVL	9	Unmodified	_IEPADAHVL_					0	0	0		ENSG00000121579|ENST00000240922|NAA50;nc|ENSG00000121579|Q9GZZ1-2|NAA50	ENSG00000121579|ENST00000240922|NAA50	ENSG00000121579|ENST00000240922|NAA50	MULTI-MATCH	OvCa9_classI_Rep2	2		2	482.758549	963.502546	-0.45974	-0.00022194	0.41633	0.00020098	-0.043417	-2.096E-05	482.75873813159694	77.834	1.8249	76.045	74.741	76.566	-1.7894	0.22424	0.00022404	NaN	94.006	84	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120060			17725	3489	14441	14463							0.01933481034848228
IEPADAHVL	9	Unmodified	_IEPADAHVL_					0	0	0		ENSG00000121579|ENST00000240922|NAA50;nc|ENSG00000121579|Q9GZZ1-2|NAA50	ENSG00000121579|ENST00000240922|NAA50	ENSG00000121579|ENST00000240922|NAA50	MULTI-MATCH	OvCa9_classI_Rep3	3		2	482.758549	963.502546	-0.70993	-0.00034272	0.68107	0.00032879	-0.028858	-1.3932E-05	482.758740678614	77.878	1.5627	75.525	74.89	76.453	-2.3527	-0.29527	0.00047965	NaN	94.006	78	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	414220			17726	3489	14441	14463							0.01933481034848228
IEPADAHVL	9	Unmodified	_IEPADAHVL_					0	0	0		ENSG00000121579|ENST00000240922|NAA50;nc|ENSG00000121579|Q9GZZ1-2|NAA50	ENSG00000121579|ENST00000240922|NAA50	ENSG00000121579|ENST00000240922|NAA50	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	482.758549	963.502546	-0.063714	-3.0758E-05	-0.11612	-5.6057E-05	-0.17983	-8.6816E-05	482.7583831377616	78.658	1.1368	75.907	75.426	76.562	-2.7514	0.086205	-0.00029004	NaN	94.006	42	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	521250			17727	3489	14441	14463							0.01933481034848228
IEPCRPMK	8	Unmodified	_IEPCRPMK_					0	0	0		ENSG00000155816|ENST00000319653|FMN2	ENSG00000155816|ENST00000319653|FMN2	ENSG00000155816|ENST00000319653|FMN2	MULTI-MSMS	OvCa99_classI_Rep5	1	487.2514953613281	2	487.251523	972.488493	-0.55237	-0.00026915	-0.62333	-0.00030372	-1.1757	-0.00057286	487.251018409696	39.296	0.74796	39.296	38.882	39.63	0					37	16	3	0	0	0	0.65062	1	2298	2298		53.351	0.26249	1	224980			17728	5802	14442	14464	19726	19726					0.0011478901055852475
IEPDIEVQL	9	Unmodified	_IEPDIEVQL_					0	0	0			REV__CON__P07744	REV__CON__P07744	MULTI-MSMS	OvCa9_classI_Rep3	3	528.2841186523438	2	528.284597	1054.55464	-2.691	-0.0014216	2.5626	0.0013538	-0.12841	-6.7835E-05	528.2858404974387	141.55	1.2874	140.54	140.14	141.43	-1.0106					66	25	4	0	0	0	0.1944	1	11700	11700		77.318	20.597	1	289450	+	+	17729	16191	14443	14465	19727	19727					0.029545996579599887
IEPDIEVQL	9	Unmodified	_IEPDIEVQL_					0	0	0			REV__CON__P07744	REV__CON__P07744	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.2839965820312	2	528.284597	1054.55464	-0.42245	-0.00022318	0.6144	0.00032458	0.19194	0.0001014	528.284824410708	142.01	0.99675	140.54	140.24	141.23	-1.4627					54	18	4	0	0	0	0.48047	1	13869	13869		44.377	7.9304	1	263670	+	+	17730	16191	14443	14465	19728	19728					0.029545996579599887
IEPKVSSLL	9	Unmodified	_IEPKVSSLL_					0	0	0			REV__nc|ENSG00000149582|Q86YD3-3|TMEM25	REV__nc|ENSG00000149582|Q86YD3-3|TMEM25	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.30120849609375	2	493.30005	984.585547	-0.68607	-0.00033844	0.057432	2.8331E-05	-0.62864	-0.00031011	493.30003291190627	92.643	1.2824	90.136	89.857	91.14	-2.5072					48	25	2	0	0	0	0.094616	1	8066	8066		98.629	5.4339	1	1068700	+		17731	28922	14444	14466	19729	19729					0.09263797762878312
IEPLRQGSY	9	Unmodified	_IEPLRQGSY_					0	0	0			REV__ENST00000488642.6_1_12:1034631-1036165:-|nuORF	REV__ENST00000488642.6_1_12:1034631-1036165:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	531.7816162109375	2	531.782556	1061.55056	-1.5399	-0.00081889	1.1515	0.00061235	-0.38839	-0.00020654	531.7830281716216	47.648	1.6888	44.939	44.39	46.079	-2.7097					102	33	5	0	0	0	0.22621	2	2898	2898;2901		71.877	4.3219	1	612800	+		17732	23773	14445	14467	19730;19731	19730					0.022245549549097632
IEPLRQGSY	9	Unmodified	_IEPLRQGSY_					0	0	0			REV__ENST00000488642.6_1_12:1034631-1036165:-|nuORF	REV__ENST00000488642.6_1_12:1034631-1036165:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.7835083007812	2	531.782556	1061.55056	-0.8739	-0.00046473	-0.0088073	-4.6836E-06	-0.88271	-0.00046941	531.7824678459274	47.97	2.462	44.862	44.287	46.749	-3.1077					144	47	5	0	0	0	0.091859	2	2635	2635;2647		99.375	22.528	1	3227400	+		17733	23773	14445	14467	19732;19733	19732					0.022245549549097632
IEPPVKPLL	9	Unmodified	_IEPPVKPLL_					0	0	0		ENSG00000106624|ENST00000223357|AEBP1	ENSG00000106624|ENST00000223357|AEBP1	ENSG00000106624|ENST00000223357|AEBP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.7628479003906	2	503.320786	1004.62702	0.43871	0.00022081	2.2774	0.0011463	2.7162	0.0013671	503.3212284061908	102.02	0.38808	102.02	101.65	102.04	0					11	8	2	0	0	0	0.027462	1	11338	11338		30.504	0	1	83804			17734	2565	14446	14468	19734	19734					0.12488978522196703
IEPVPPKP	8	Unmodified	_IEPVPPKP_					0	0	0			REV__ENSG00000124383|ENST00000244230|MPHOSPH10	REV__ENSG00000124383|ENST00000244230|MPHOSPH10	MULTI-SECPEP	OvCa99_classI_Rep5	1	439.22808837890625	2	438.763104	875.511654	0.22267	9.77E-05	-4.0466	-0.0017755	-3.8239	-0.0016778	438.7612437887642	50.133	0.65068	50.133	49.944	50.594	0					23	14	2	0	0	0	0.028476	1	3788	3788		23.042	10.083	1	358900	+		17735	18684	14447	14469	19735	19735					0.06891874391192232
IEQAVFKAL	9	Unmodified	_IEQAVFKAL_					0	0	0			REV__tr|A0A553SG76|A0A553SG76_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_10270PE=4SV=1	REV__tr|A0A553SG76|A0A553SG76_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_10270PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.7606201171875	2	509.800217	1017.58588	0.12573	6.4098E-05	-0.8161	-0.00041605	-0.69037	-0.00035195	509.79975468605744	57.173	0.39143	57.173	57.004	57.396	0					12	8	2	0	0	0	0.027432	1	4794	4794		41.427	0	1	144030	+		17736	29669	14448	14470	19736	19736					0.07779217482709555
IEQEIQAAVI	10	Unmodified	_IEQEIQAAVI_					0	0	0			REV__tr|A0A553SNK4|A0A553SNK4_NIACISite-specificintegraseOS=NialliacirculansOX=1397GN=CEQ21_24580PE=3SV=1	REV__tr|A0A553SNK4|A0A553SNK4_NIACISite-specificintegraseOS=NialliacirculansOX=1397GN=CEQ21_24580PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	557.3148803710938	2	557.311146	1112.60774	3.186	0.0017756	-0.91691	-0.000511	2.2691	0.0012646	557.3105792601305	90.057	0.7409	90.057	89.763	90.504	0					37	17	3	0	0	0	0.12609	1	9642	9642		107.01	2.584	1	2664300	+		17737	30429	14449	14471	19737	19737					0.05593977440616982
IEQEIRILL	9	Unmodified	_IEQEIRILL_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-MSMS	OvCa99_classI_Rep5	1	563.8470458984375	2	563.845156	1125.67576	2.3577	0.0013294	-0.25576	-0.00014421	2.102	0.0011852	563.8449727259887	116.5	3.3735	116.5	116.09	119.47	0					183	72	6	0	0	0	0.0093048	3	13316	13316;13345;13370		172.25	45.533	1	12349000			17738	4511	14450	14472	19738;19739;19740	19738					0.11794847091277916
IEQEQKLAL	9	Unmodified	_IEQEQKLAL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2;ACTR2|p.L303Gfs*32|1|0.04|ENSG00000138071|chr2:65265066-65265067|-/TGGAGTGCAGTGGTGCAGTCTCG|frameshift_variant	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	OvCa99_classI_Rep5	1	536.3056030273438	2	536.305864	1070.59717	0.097858	5.2482E-05	-0.28269	-0.00015161	-0.18484	-9.9128E-05	536.3055985521422	72.879	0.98697	72.879	72.492	73.479	0					56	24	4	0	0	0	0.045281	1	7139	7139		122.18	18.119	1	6142500			17739	4652	14451	14473	19741	19741					0.06469994786198185
IEQEQKLAL	9	Unmodified	_IEQEQKLAL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2;ACTR2|p.L303Gfs*32|1|0.04|ENSG00000138071|chr2:65265066-65265067|-/TGGAGTGCAGTGGTGCAGTCTCG|frameshift_variant	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.3057861328125	2	536.305864	1070.59717	-0.80372	-0.00043104	-0.16364	-8.776E-05	-0.96736	-0.0005188	536.3056799646166	75.757	1.6238	72.818	72.497	74.121	-2.9389					62	33	3	0	0	0	0.0441	3	5981	5981;5991;6004		123.21	21.748	1	636560			17740	4652	14451	14473	19742;19743;19744	19742					0.06469994786198185
IEQGLSLLN	9	Unmodified	_IEQGLSLLN_					0	0	0			REV__nc|ENSG00000088876|Q6P1L6-3|ZNF343	REV__nc|ENSG00000088876|Q6P1L6-3|ZNF343	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3009948730469	2	493.779482	985.544411	-1.3264	-0.00065494	0.36321	0.00017935	-0.96318	-0.0004756	493.7796854725001	91.953	0.58444	89.929	89.685	90.27	-2.0241					27	11	4	0	0	0	0.027304	1	5814	5814		87.696	0	1	167650	+		17741	28748	14452	14474	19745	19745					0.05106036723395846
IEQILEEAR	9	Unmodified	_IEQILEEAR_					0	0	0			REV__ENST00000562590.5_1_16:28922190-28936514:-|nuORF	REV__ENST00000562590.5_1_16:28922190-28936514:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	549.8297729492188	2	550.800946	1099.58734	0.95586	0.00052649	-1.2138	-0.00066858	-0.25798	-0.0001421	550.8000321102596	82.53	1.8344	80.931	79.715	81.55	-1.5989					57	35	3	0	0	0	0.027217	1	7017	7017		116.9	12.157	1	43471	+		17742	22014	14453	14475	19746	19746					0.041528067808030755
IEQILLVNELV	11	Unmodified	_IEQILLVNELV_					0	0	0			REV__tr|A0A553SPI9|A0A553SPI9_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_26505PE=4SV=1	REV__tr|A0A553SPI9|A0A553SPI9_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_26505PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8814086914062	2	641.884478	1281.7544	-3.6311	-0.0023307	0.70501	0.00045254	-2.9261	-0.0018782	641.8847801872174	153.39	4.0845	151.94	150.68	154.77	-1.4516					420	106	6	0	0	0	0.71789	1	15240	15240		23.523	1.8369	1	809780	+		17743	30540	14454	14476	19747	19747					0.12479654605704127
IEQKTLRTG	9	Unmodified	_IEQKTLRTG_					0	0	0		tr|A0A7D6ZWU3|A0A7D6ZWU3_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_09260PE=4SV=1	tr|A0A7D6ZWU3|A0A7D6ZWU3_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_09260PE=4SV=1	tr|A0A7D6ZWU3|A0A7D6ZWU3_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_09260PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	523.302978515625	2	523.303655	1044.59276	-2.1228	-0.0011108	2.0352	0.001065	-0.087543	-4.5811E-05	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.64427	1	11447	11447		26.693	1.1189	1	183010			17744	35854	14455	14477	19748	19748					0.07224530363305348
IEQNWKVF	8	Unmodified	_IEQNWKVF_					0	0	0			REV__MER57A-int_dup1703|chr19:23112751-23113886:+|1.0685339057591443|0.266030358890427|2.01|427.0|66|2|anti-sense	REV__MER57A-int_dup1703|chr19:23112751-23113886:+|1.0685339057591443|0.266030358890427|2.01|427.0|66|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.31591796875	2	532.282192	1062.54983	1.4262	0.00075916	1.469	0.00078192	2.8952	0.0015411	532.2821982859394	111.86	0.41412	111.86	111.7	112.11	0					12	8	2	0	0	0	0.028476	1	12708	12708		57.811	0	1	82760	+		17745	28659	14456	14478	19749	19749					0.021057603058579843
IEQRINRGPQ	10	Unmodified	_IEQRINRGPQ_					0	0	0			REV__ENSG00000172915|ENST00000379939|NBEA	REV__ENSG00000172915|ENST00000379939|NBEA	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.21759033203125	3	404.226549	1209.65782	1.3203	0.00053372	1.879	0.00075953	3.1993	0.0012933	404.2273317327008	46.786	0.26534	46.786	46.587	46.852	0					7	5	2	0	0	0	0.02678	1	3311	3311		23.378	0	1	89310	+		17746	21736	14457	14479	19750	19750					0.0613752488911814
IEQVRWNE	8	Unmodified	_IEQVRWNE_					0	0	0			REV__tr|A0A7D6ZEY9|A0A7D6ZEY9_9CLOTHEATrepeatdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15690PE=4SV=1	REV__tr|A0A7D6ZEY9|A0A7D6ZEY9_9CLOTHEATrepeatdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15690PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.2962646484375	2	537.272355	1072.53016	-1.278	-0.00068662	3.8867	0.0020882	2.6087	0.0014016	537.2740071752258	91.558	0.19958	89.016	88.862	89.061	-2.5425					5	3	2	0	0	0	0.028476	1	7920	7920		35.618	3.6634	1	13467	+		17747	31954	14458	14480	19751	19751					-0.003206157049135072
IERDVTPA	8	Unmodified	_IERDVTPA_					0	0	0		ENST00000512959.1_1_4:55595508-55599400:+|nuORF;nc|ENSG00000157404|P10721-4|KIT;nc|ENSG00000157404|P10721-2|KIT;ENSG00000157404|ENST00000288135|KIT	ENST00000512959.1_1_4:55595508-55599400:+|nuORF	ENST00000512959.1_1_4:55595508-55599400:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	450.74615478515625	2	450.742899	899.471246	1.9549	0.00088114	4.3434	0.0019578	6.2982	0.0028389	450.74472944736306	127.3	0.89854	127.3	127.05	127.95	0					31	19	2	0	0	0	0.64026	1	14732	14732		55.504	2.1528	1	226620			17748	5890	14459	14481	19752	19752					0.017489080007521807
IEREKEELM	9	Unmodified	_IEREKEELM_					0	0	0		ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	MSMS	OvCa99_classI_Rep5	1	588.8013916015625	2	588.800088	1175.58562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.509	1	64.509	64.009	65.009	0								0	0	0	0.022622	1	5869	5869		96.19	24.313	1				17749	5327	14460	14482	19753	19753					0.004854297005294939
IERELEPII	9	Unmodified	_IERELEPII_					0	0	0			REV__nc|ENSG00000168268|Q9H857-4|NT5DC2	REV__nc|ENSG00000168268|Q9H857-4|NT5DC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.3460083007812	2	556.321514	1110.62847	1.854	0.0010314	2.6705	0.0014857	4.5245	0.0025171	556.3224074747133	122.82	0.69325	122.82	122.54	123.23	0					31	14	3	0	0	0	0.02741	1	14120	14120		60.972	13.315	1	243050	+		17750	16294	14461	14483	19754	19754					0.07758567820292228
IERELQREAE	10	Unmodified	_IERELQREAE_					0	0	0			REV__ENSG00000120451|ENST00000265909|SNX19	REV__ENSG00000120451|ENST00000265909|SNX19	MULTI-MSMS	OvCa9_classI_Rep4_	4	424.8902893066406	3	424.889603	1271.64698	-0.11144	-4.7351E-05	0.70501	0.00029955	0.59357	0.0002522	424.89005057309436	20.59	2.4808	19.252	18.851	21.331	-1.3386					183	49	7	0	0	0	0.6079	1	44	44		41.08	1.0219	1	5179600	+		17751	18500	14462	14484	19755	19755					0.022020777242232725
IERFKAIK	8	Unmodified	_IERFKAIK_					0	0	0		ENSG00000132749|ENST00000255087|TESMIN	ENSG00000132749|ENST00000255087|TESMIN	ENSG00000132749|ENST00000255087|TESMIN	MULTI-MSMS	OvCa99_classI_Rep5	1	502.81488037109375	2	502.816202	1003.61785	0.75174	0.00037799	-3.2646	-0.0016415	-2.5129	-0.0012635	502.81449604378173	158.53	1.0083	158.53	158.23	159.24	0					53	20	4	0	0	0	0.73288	1	18560	18560		35.201	6.9464	1	885070			17752	4170	14463	14485	19756	19756					0.11618629956524273
IERFVKIPE	9	Unmodified	_IERFVKIPE_					0	0	0		ENSG00000174145|ENST00000309447|NWD2	ENSG00000174145|ENST00000309447|NWD2	ENSG00000174145|ENST00000309447|NWD2	MULTI-MSMS	OvCa99_classI_Rep5	1	565.8356323242188	2	565.832049	1129.64954	2.555	0.0014457	2.8033	0.0015862	5.3583	0.0030319	565.8334984368654	99.635	2.9756	99.635	99.276	102.25	0					141	70	4	0	0	0	0.059253	1	11020	11020		113.41	3.2917	1	23873000			17753	7442	14464	14486	19757	19757					0.089905779198034
IERGAKLWQI	10	Unmodified	_IERGAKLWQI_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa9_classI_Rep4_	4	607.3538208007812	2	607.356222	1212.69789	-0.31245	-0.00018977	-3.3365	-0.0020264	-3.6489	-0.0022162	607.3541822162564	45.888	1.7639	42.815	42.457	44.221	-3.0724					89	33	4	0	0	0	0.52162	1	2361	2361		31.53	0	1	952630	+		17754	28942;32737	14465	14487	19758	19758					0.10005071559726275
IERGVIPLI	9	Unmodified	_IERGVIPLI_					0	0	0			REV__tr|A0A553SK78|A0A553SK78_NIACIValine--tRNAligaseOS=NialliacirculansOX=1397GN=valSPE=3SV=1	REV__tr|A0A553SK78|A0A553SK78_NIACIValine--tRNAligaseOS=NialliacirculansOX=1397GN=valSPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.83270263671875	2	505.32386	1008.63317	1.3001	0.00065699	1.7385	0.00087851	3.0386	0.0015355	505.3245121400995	111.6	0.73227	111.6	111.38	112.11	0					28	15	3	0	0	0	0.027279	1	12686	12686		60.972	15.02	1	280040	+		17755	30089	14466	14488	19759	19759					0.12919496753715976
IERHFIEITD	10	Unmodified	_IERHFIEITD_					0	0	0		ENSG00000164134|ENST00000296543|NAA15;NAA15|p.E655Kfs*7|1|0.29|ENSG00000164134|chr4:139376379-139376379|G/-|frameshift_variant	ENSG00000164134|ENST00000296543|NAA15	ENSG00000164134|ENST00000296543|NAA15	MULTI-MSMS	OvCa9_classI_Rep2	2	424.8891296386719	3	424.890944	1271.651	-0.9883	-0.00041992	-1.2348	-0.00052465	-2.2231	-0.00094457	424.8904354672349	33.271	1.2911	30.562	30.321	31.612	-2.7097					77	25	4	0	0	0	0.73063	1	1219	1219		27.047	1.9213	1	615830			17756	6419	14467	14489	19760	19760					0.02604167217896247
IERIDLET	8	Unmodified	_IERIDLET_					0	0	0		ENSG00000123384|ENST00000243077|LRP1;ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.Y2986Sfs*28|1|0.8|ENSG00000168702|chr2:140495631-140495643|TGTAAGTCCCGTA/-|frameshift_variant	ENSG00000123384|ENST00000243077|LRP1;ENSG00000168702|ENST00000389484|LRP1B	ENSG00000168702|ENST00000389484|LRP1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.7701416015625	2	494.769114	987.523675	2.0157	0.00099732	1.0405	0.00051478	3.0562	0.0015121	494.7695372719216	95.282	1.0923	95.282	94.905	95.997	0					36	25	4	0	0	0	0.028476	1	10488	10488		25.45	0	1	587940			17757	6934;3592	14468	14490	19761	19761					0.029414463437205995
IERKAMAVD	9	Unmodified	_IERKAMAVD_					0	0	0			REV__ENSG00000176624|ENST00000406189|MEX3C	REV__ENSG00000176624|ENST00000406189|MEX3C	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2744750976562	2	516.778959	1031.54336	0.48293	0.00024957	1.4285	0.00073819	1.9114	0.00098776	516.779983605684	81.128	1.2339	81.128	80.827	82.061	0					67	29	4	0	0	0	0.027462	1	8329	8329		32.812	0	1	1370700	+		17758	21960	14469	14491	19762	19762					0.02885499082822207
IERKKPRNPT	10	Unmodified	_IERKKPRNPT_					0	0	0			REV__EPB41L1-C20orf152|3|fusion	REV__EPB41L1-C20orf152|3|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	619.86767578125	2	619.870028	1237.7255	-3.8587	-0.0023919	2.9348	0.0018192	-0.92393	-0.00057272	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.75313	1	15223	15223		24.519	2.8334	1	492670	+		17759	28108	14470	14492	19763	19763					0.11614974819940471
IERLGFLTL	9	Unmodified	_IERLGFLTL_					0	0	0		nc|ENSG00000214216|Q1A5X6-3|IQCJ;nc|ENSG00000214216|Q1A5X6|IQCJ	nc|ENSG00000214216|Q1A5X6-3|IQCJ	nc|ENSG00000214216|Q1A5X6-3|IQCJ	MULTI-MSMS	OvCa99_classI_Rep5	1	531.3204956054688	2	531.321317	1060.62808	1.0114	0.00053736	-2.7531	-0.0014628	-1.7417	-0.00092541	531.319723609414	154.15	1.3373	154.15	153.78	155.12	0					82	26	4	0	0	0	0.60342	1	18105	18105		31.53	1.0262	1	933000			17760	15309	14471	14493	19764	19764					0.10019192891104467
IERLQQASPE	10	Unmodified	_IERLQQASPE_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MULTI-MSMS	OvCa9_classI_Rep4_	4	585.8104858398438	2	585.809302	1169.60405	0.15835	9.2764E-05	-0.72804	-0.00042649	-0.56968	-0.00033373	585.8088520660382	67.119	1.4249	63.629	63.198	64.622	-3.4902					86	26	5	0	0	0	0.42082	1	4921	4921		65.465	3.7741	1	1424200	+		17761	17124	14472	14494	19765	19765					0.026033076667545174
IERPTYTNL	9	Unmodified	_IERPTYTNL_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENSG00000183785|ENST00000330423|TUBA8;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENSG00000243910|ENST00000490341|TUBA4B;TUBA4A|p.D218H|1|0.18|ENSG00000127824|chr2:219251047-219251047|C/G|missense_variant;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;TUBA1A|p.R264Pfs*25|1|0.06|ENSG00000167552|chr12:49185575-49185575|C/-|frameshift_variant;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000167552|ENST00000301071|TUBA1A	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.7957153320312	2	553.795663	1105.57677	-0.18928	-0.00010482	-0.1187	-6.5736E-05	-0.30798	-0.00017056	553.795608559581	76.986	1.9746	74.17	73.767	75.742	-2.8165					98	40	4	0	0	0	0.040625	3	6161	6134;6148;6161		126.24	33.099	1	967160			17762	3593;6805;6806	14473	14495	19766;19767;19768	19768					0.028208241263882883
IERPTYTNL	9	Unmodified	_IERPTYTNL_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENSG00000183785|ENST00000330423|TUBA8;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENSG00000243910|ENST00000490341|TUBA4B;TUBA4A|p.D218H|1|0.18|ENSG00000127824|chr2:219251047-219251047|C/G|missense_variant;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;TUBA1A|p.R264Pfs*25|1|0.06|ENSG00000167552|chr12:49185575-49185575|C/-|frameshift_variant;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000167552|ENST00000301071|TUBA1A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	553.795663	1105.57677	0.093713	5.1898E-05	-0.043722	-2.4213E-05	0.049991	2.7685E-05	553.7954640797504	76.089	1.6098	74.235	73.689	75.299	-1.854	0.03244	5.9589E-05	NaN	126.24	96	30	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249840			17763	3593;6805;6806	14473	14495							0.028208241263882883
IERQCLEIE	9	Unmodified	_IERQCLEIE_					0	0	0			REV__ENSG00000188283|ENST00000684119|ZNF383	REV__ENSG00000188283|ENST00000684119|ZNF383	MULTI-MSMS	OvCa99_classI_Rep5	1	566.78955078125	2	566.786981	1131.55941	1.8122	0.0010271	1.5904	0.00090139	3.4026	0.0019285	566.7877677672303	127.25	1.3202	127.25	127.05	128.37	0					81	28	4	0	0	0	0.075543	1	14771	14771		104.06	13.687	1	2562000	+		17764	22702	14474	14496	19769	19769					-0.0011083947094903124
IERQNIICK	9	Unmodified	_IERQNIICK_					0	0	0			REV__tr|A0A7D6VV96|A0A7D6VV96_9CLOTTypeIVpilustwitchingmotilityproteinPilTOS=ClostridiumintestinaleOX=36845GN=HZF06_09915PE=3SV=1	REV__tr|A0A7D6VV96|A0A7D6VV96_9CLOTTypeIVpilustwitchingmotilityproteinPilTOS=ClostridiumintestinaleOX=36845GN=HZF06_09915PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.3056640625	2	558.813333	1115.61211	0.91139	0.0005093	-0.84146	-0.00047022	0.069933	3.9079E-05	558.8126404051627	72.106	0.6982	72.106	71.835	72.533	0					22	16	2	0	0	0	0.027462	1	7038	7038		44.117	0	1	244100	+		17765	31711	14475	14497	19770	19770					0.05893163382552302
IERSLLRQTK	10	Unmodified	_IERSLLRQTK_					0	0	0			REV__ENSG00000177453|ENST00000326035|NIM1K	REV__ENSG00000177453|ENST00000326035|NIM1K	MULTI-SECPEP	OvCa9_classI_Rep4_	4	415.7230224609375	3	415.254216	1242.74082	-0.72494	-0.00030104	3.9196	0.0016276	3.1947	0.0013266	415.25577695688463	45.905	0.88917	42.833	42.509	43.398	-3.0724					35	16	3	0	0	0	0.027187	1	2392	2392		14.086	1.1285	1	51375	+		17766	22006	14476	14498	19771	19771					0.12915841617132173
IERSLLRQTK	10	Unmodified	_IERSLLRQTK_					0	0	0			REV__ENSG00000177453|ENST00000326035|NIM1K	REV__ENSG00000177453|ENST00000326035|NIM1K	MULTI-MATCH	OvCa9_classI_Rep2	2		3	415.254216	1242.74082	0.51234	0.00021275	2.9174	0.0012115	3.4297	0.0014242	415.2553070234637	45.488	0.95099	42.779	42.448	43.399	-2.7097	-0.027177	-0.00054702	NaN	6.001	43	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54674	+		17767	22006	14476	14498							0.12915841617132173
IERVALNSR	9	Unmodified	_IERVALNSR_					0	0	0		ENSG00000163811|ENST00000407426|WDR43;ENST00000466067.1_1_2:29147965-29158512:+|nuORF	ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.3106689453125	2	529.309272	1056.60399	-0.84356	-0.0004465	1.1092	0.00058713	0.26568	0.00014062	529.309295027722	48.146	1.0249	45.038	44.684	45.709	-3.1077					31	19	3	0	0	0	0.60342	1	2629	2629		31.53	3.6476	1	1104400			17768	6362	14477	14499	19772	19772					0.07795352457424087
IERYPEETL	9	Unmodified	_IERYPEETL_					0	0	0		PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant;PRKDC|p.P3973Afs*40|1|0.09|ENSG00000253729|chr8:47777811-47777812|-/C|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant	PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.2942504882812	2	575.292953	1148.57135	-0.29946	-0.00017228	-0.57703	-0.00033196	-0.87649	-0.00050424	575.292535034881	75.364	1.2533	72.133	71.867	73.12	-3.2308					44	25	2	0	0	0	0.14855	1	5937	5937		85.161	4.7062	1	542690			17769	9437	14478	14500	19773	19773					0.003011005439020664
IERYPEETL	9	Unmodified	_IERYPEETL_					0	0	0		PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant;PRKDC|p.P3973Afs*40|1|0.09|ENSG00000253729|chr8:47777811-47777812|-/C|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant	PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	575.292953	1148.57135	-0.98987	-0.00056947	1.5507	0.00089212	0.56085	0.00032265	575.2934151189571	74.33	0.79083	71.92	71.697	72.488	-2.4106	-0.10672	0.0019835	NaN	85.161	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41713			17770	9437	14478	14500							0.003011005439020664
IERYWGQWRWN	11	Unmodified	_IERYWGQWRWN_					0	0	0			REV__tr|A0A553SU50|A0A553SU50_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06270PE=4SV=1	REV__tr|A0A553SU50|A0A553SU50_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06270PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	531.7822265625	3	531.928503	1592.76368	-1.5022	-0.00079909	2.5484	0.0013556	1.0462	0.0005565	532.264407853202	47.441	0.59415	44.731	44.489	45.083	-2.7097					13	11	2	0	0	0	0.026324	1	2913	2913		4.8861	0	1	13197	+		17771	31038	14479	14501	19774	19774					-0.008991392653797448
IERYWGQWRWN	11	Unmodified	_IERYWGQWRWN_					0	0	0			REV__tr|A0A553SU50|A0A553SU50_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06270PE=4SV=1	REV__tr|A0A553SU50|A0A553SU50_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06270PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.7835083007812	3	531.928503	1592.76368	-0.74568	-0.00039665	0.75474	0.00040147	0.0090512	4.8146E-06	531.9291207646062	47.85	0.76489	44.742	44.531	45.296	-3.1077					22	14	2	0	0	0	0.026401	1	2599	2599		17.167	4.2093	1	43717	+		17772	31038	14479	14501	19775	19775					-0.008991392653797448
IESAGFKLN	9	Unmodified	_IESAGFKLN_					0	0	0		ENSG00000014216|ENST00000279247|CAPN1;ENST00000528165.5_1_11:64977175-64978433:+|nuORF;ENST00000530567.1_1_11:64977449-64978754:+|nuORF	ENSG00000014216|ENST00000279247|CAPN1	ENSG00000014216|ENST00000279247|CAPN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.248779296875	2	489.766374	977.518196	0.35778	0.00017523	-1.4058	-0.00068851	-1.048	-0.00051328	489.7655122125208	66.801	0.43909	66.801	66.575	67.014	0					26	10	3	0	0	0	0.027462	1	6194	6194		35.618	5.3006	1	822820			17773	997	14480	14502	19776	19776					0.02853767551891906
IESDGPPLLPP	11	Unmodified	_IESDGPPLLPP_					0	0	0			REV__ENSG00000126461|ENST00000360565|SCAF1	REV__ENSG00000126461|ENST00000360565|SCAF1	MULTI-SECPEP	OvCa9_classI_Rep2	2	568.3112182617188	2	567.805697	1133.59684	-0.46864	-0.0002661	-3.839	-0.0021798	-4.3076	-0.0024459	567.8050644804272	86.327	1.6849	84.837	84.196	85.881	-1.4906					44	32	2	0	0	0	0.025416	1	7569	7569		34.173	8.5985	1	17113	+		17774	18783	14481	14503	19777	19777					0.035385750663408544
IESEHIGKG	9	Unmodified	_IESEHIGKG_					0	0	0			REV__tr|A0A7D7A5K9|A0A7D7A5K9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07290PE=4SV=1	REV__tr|A0A7D7A5K9|A0A7D7A5K9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07290PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	485.2530517578125	2	485.253631	968.49271	0.029002	1.4073E-05	-1.7866	-0.00086694	-1.7576	-0.00085287	485.2518206848736	32.035	1.0852	32.035	31.807	32.892	0					33	21	3	0	0	0	0.18193	1	1367	1367		79.451	2.6769	1	274960	+		17775	32638	14482	14504	19778	19778					0.0072029302948521945
IESESIVTDP	10	Unmodified	_IESESIVTDP_					0	0	0		tr|A0A7D7A173|A0A7D7A173_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11620PE=4SV=1	tr|A0A7D7A173|A0A7D7A173_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11620PE=4SV=1	tr|A0A7D7A173|A0A7D7A173_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11620PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	544.7619018554688	2	545.269144	1088.52373	0.14669	7.9983E-05	-3.1588	-0.0017224	-3.0121	-0.0016424	545.2671665559722	114.38	1.4253	114.38	113.92	115.35	0					81	30	5	0	0	0	0.52321	1	13032	13032		51.335	1.8939	1	2213400			17776	36027	14483	14505	19779	19779					-0.016985984469329196
IESHETANL	9	Unmodified	_IESHETANL_					0	0	0		nc|ENSG00000118482|Q92576-2|PHF3;ENSG00000118482|ENST00000262043|PHF3	nc|ENSG00000118482|Q92576-2|PHF3	nc|ENSG00000118482|Q92576-2|PHF3	MULTI-MSMS	OvCa99_classI_Rep5	1	507.2499084472656	2	507.248546	1012.48254	-0.5798	-0.0002941	0.74	0.00037536	0.1602	8.1259E-05	507.2488326252298	49.355	1.3014	49.355	49.119	50.421	0					45	29	3	0	0	0	0.074342	1	3679	3679		104.75	13.97	1	1093200			17777	3307	14484	14506	19780	19780					-0.023203146957484932
IESHPDNAL	9	Unmodified	_IESHPDNAL_					0	0	0		ENST00000567743.5_1_16:66851261-66857485:-|nuORF;nc|ENSG00000159593|Q13564-3|NAE1;nc|ENSG00000159593|Q13564-2|NAE1;ENSG00000159593|ENST00000290810|NAE1;nc|ENSG00000159593|Q13564-4|NAE1	ENST00000567743.5_1_16:66851261-66857485:-|nuORF	ENST00000567743.5_1_16:66851261-66857485:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	498.2446594238281	2	498.243264	994.471974	-0.8829	-0.0004399	0.61953	0.00030868	-0.26337	-0.00013122	498.24349768675347	50.337	0.57146	50.337	50.114	50.685	0					39	12	4	0	0	0	0.049969	1	3809	3809		118.74	47.447	1	2720400			17778	6019	14485	14507	19781	19781					-0.025482973501880224
IESKKKLL	8	Unmodified	_IESKKKLL_					0	0	0			REV__ENST00000572021.5_1_17:54969063-54989474:-|nuORF	REV__ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	479.7873840332031	2	479.81841	957.622267	-0.57518	-0.00027598	0.75707	0.00036326	0.18189	8.7272E-05	479.8186100302019	77.304	0.77957	74.945	74.518	75.298	-2.3589					30	14	3	0	0	0	0.028476	1	4073	4073		7.1934	0	1	44305	+		17779	18527	14486	14508	19782	19782					0.14176094379422466
IESKYLILL	9	Unmodified	_IESKYLILL_					0	0	0		nc|ENSG00000167202|Q9UPU7-2|TBC1D2B;ENSG00000167202|ENST00000300584|TBC1D2B;ENST00000472786.1_1_15:78295640-78309087:-|nuORF	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	MULTI-MSMS	OvCa99_classI_Rep5	1	546.3400268554688	2	546.339175	1090.6638	1.2248	0.00066914	0.55058	0.00030081	1.7754	0.00096995	546.3393269424207	124.74	0.82432	124.74	124.42	125.25	0					47	18	4	0	0	0	0.041116	2	14421	14398;14421		125.81	14.166	1	1028700			17780	6770	14487	14509	19783;19784	19784					0.12209230348116762
IESKYLILL	9	Unmodified	_IESKYLILL_					0	0	0		nc|ENSG00000167202|Q9UPU7-2|TBC1D2B;ENSG00000167202|ENST00000300584|TBC1D2B;ENST00000472786.1_1_15:78295640-78309087:-|nuORF	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	MULTI-MSMS	OvCa9_classI_Rep2	2	546.3385009765625	2	546.339175	1090.6638	0.29118	0.00015908	-0.8174	-0.00044658	-0.52622	-0.00028749	546.3386096550684	124.38	1.4314	124.15	123.83	125.26	-0.23193					60	28	3	0	0	0	0.46356	1	12103	12103		45.972	1.8554	1	123040			17781	6770	14487	14509	19785	19785					0.12209230348116762
IESKYLILL	9	Unmodified	_IESKYLILL_					0	0	0		nc|ENSG00000167202|Q9UPU7-2|TBC1D2B;ENSG00000167202|ENST00000300584|TBC1D2B;ENST00000472786.1_1_15:78295640-78309087:-|nuORF	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.3389282226562	2	546.339175	1090.6638	-2.4634	-0.0013458	1.9617	0.0010718	-0.50167	-0.00027408	546.3400848127436	125.68	1.1765	124.27	123.99	125.17	-1.4143					54	23	3	0	0	0	0.059253	2	11947	11947;11972		113.41	11.811	1	120780			17782	6770	14487	14509	19786;19787	19786					0.12209230348116762
IESKYLILL	9	Unmodified	_IESKYLILL_					0	0	0		nc|ENSG00000167202|Q9UPU7-2|TBC1D2B;ENSG00000167202|ENST00000300584|TBC1D2B;ENST00000472786.1_1_15:78295640-78309087:-|nuORF	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	546.339175	1090.6638	1.1411	0.00062342	-1.331	-0.00072718	-0.18992	-0.00010376	546.3382946601236	125.32	1.1437	124.27	124	125.15	-1.0519	0.038328	-0.00131	NaN	113.41	54	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121800			17783	6770	14487	14509							0.12209230348116762
IESLLAAACLL	11	Unmodified	_IESLLAAACLL_					0	0	0		ENSG00000102271|ENST00000373119|KLHL4;nc|ENSG00000102271|Q9C0H6-2|KLHL4	ENSG00000102271|ENST00000373119|KLHL4	ENSG00000102271|ENST00000373119|KLHL4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	558.8043212890625	2	558.820292	1115.62603	1.3646	0.00076258	1.4758	0.00082469	2.8404	0.0015873	558.8206496867783	38.136	0.49667	35.209	34.857	35.354	-2.9264					15	8	2	0	0	0	0.025746	1	1425	1425		19.104	0	1	31226			17784	2235	14488	14510	19788	19788					0.07284396090949485
IESNHPIVL	9	Unmodified	_IESNHPIVL_					0	0	0		nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;ENST00000493122.1_1_13:98671845-98673393:+|nuORF	nc|ENSG00000065150|O00410-2|IPO5	nc|ENSG00000065150|O00410-2|IPO5	MULTI-MSMS	OvCa99_classI_Rep5	1	511.2886047363281	2	511.287474	1020.5604	2.1729	0.001111	-0.26862	-0.00013734	1.9043	0.00097365	511.28722570408416	77.268	1.0854	77.268	76.882	77.968	0					65	25	4	0	0	0	0.045281	2	7798	7771;7798		122.18	45.402	1	8698400			17785	1316	14489	14511	19789;19790	19790					0.05093742960275449
IESNHPIVL	9	Unmodified	_IESNHPIVL_					0	0	0		nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;ENST00000493122.1_1_13:98671845-98673393:+|nuORF	nc|ENSG00000065150|O00410-2|IPO5	nc|ENSG00000065150|O00410-2|IPO5	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.2894592285156	2	511.287474	1020.5604	-0.88577	-0.00045288	0.435	0.00022241	-0.45077	-0.00023047	511.2875016253689	80.496	1.6178	77.785	77.367	78.985	-2.7106					78	32	4	0	0	0	0.1804	2	6575	6575;6586		79.713	10.856	1	794140			17786	1316	14489	14511	19791;19792	19791					0.05093742960275449
IESNHPIVL	9	Unmodified	_IESNHPIVL_					0	0	0		nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;ENST00000493122.1_1_13:98671845-98673393:+|nuORF	nc|ENSG00000065150|O00410-2|IPO5	nc|ENSG00000065150|O00410-2|IPO5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	511.287474	1020.5604	0.2684	0.00013723	-0.72332	-0.00036982	-0.45492	-0.00023259	511.2870023789357	79.653	1.7179	77.958	77.4	79.118	-1.6951	0.086389	-0.00034077	NaN	79.713	99	31	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	368410			17787	1316	14489	14511							0.05093742960275449
IESNHPIVL	9	Unmodified	_IESNHPIVL_					0	0	0		nc|ENSG00000065150|O00410-2|IPO5;ENSG00000065150|ENST00000651721|IPO5;nc|ENSG00000065150|O00410-3|IPO5;ENST00000493122.1_1_13:98671845-98673393:+|nuORF	nc|ENSG00000065150|O00410-2|IPO5	nc|ENSG00000065150|O00410-2|IPO5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	511.287474	1020.5604	0.281	0.00014367	-0.75412	-0.00038557	-0.47312	-0.0002419	511.28698405170303	79.759	1.4733	77.419	77.103	78.577	-2.3399	0.07551	-0.00024774	NaN	122.18	91	28	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	630750			17788	1316	14489	14511							0.05093742960275449
IESPLFLKL	9	Unmodified	_IESPLFLKL_					0	0	0		ENST00000468499.5_1_7:99687333-99688626:+|nuORF;ENST00000496358.1_1_7:99686670-99688376:+|nuORF;ENSG00000168090|ENST00000303904|COPS6	ENST00000468499.5_1_7:99687333-99688626:+|nuORF	ENST00000468499.5_1_7:99687333-99688626:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	530.3267211914062	2	530.326068	1058.63758	1.8999	0.0010076	-0.10517	-5.5776E-05	1.7947	0.00095177	530.3259376423567	128.86	1.4011	128.86	128.56	129.96	0					78	29	4	0	0	0	0.022645	1	14923	14923		143.89	26.983	1	2268400			17789	6873	14490	14512	19793	19793					0.11060961176622186
IESPLFLKL	9	Unmodified	_IESPLFLKL_					0	0	0		ENST00000468499.5_1_7:99687333-99688626:+|nuORF;ENST00000496358.1_1_7:99686670-99688376:+|nuORF;ENSG00000168090|ENST00000303904|COPS6	ENST00000468499.5_1_7:99687333-99688626:+|nuORF	ENST00000468499.5_1_7:99687333-99688626:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	530.3263549804688	2	530.326068	1058.63758	0.27037	0.00014339	-0.63155	-0.00033493	-0.36118	-0.00019154	530.3255931680418	127.44	2.0265	127.21	126.94	128.96	-0.2359					113	40	4	0	0	0	0.012163	7	12491	12455;12460;12466;12472;12478;12484;12491		161.9	26.298	1	794520			17790	6873	14490	14512	19794;19795;19796;19797;19798;19799;19800	19800					0.11060961176622186
IESPLFLKL	9	Unmodified	_IESPLFLKL_					0	0	0		ENST00000468499.5_1_7:99687333-99688626:+|nuORF;ENST00000496358.1_1_7:99686670-99688376:+|nuORF;ENSG00000168090|ENST00000303904|COPS6	ENST00000468499.5_1_7:99687333-99688626:+|nuORF	ENST00000468499.5_1_7:99687333-99688626:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	530.32568359375	2	530.326068	1058.63758	0.82289	0.0004364	-1.0619	-0.00056315	-0.23901	-0.00012675	530.3254027341202	128.54	1.8781	127.44	127.12	129	-1.0933					101	37	4	0	0	0	0.041116	7	10120	10108;10114;10120;10126;10132;10138;10145		125.81	18.807	1	497670			17791	6873	14490	14512	19801;19802;19803;19804;19805;19806;19807	19803					0.11060961176622186
IESPLFLKL	9	Unmodified	_IESPLFLKL_					0	0	0		ENST00000468499.5_1_7:99687333-99688626:+|nuORF;ENST00000496358.1_1_7:99686670-99688376:+|nuORF;ENSG00000168090|ENST00000303904|COPS6	ENST00000468499.5_1_7:99687333-99688626:+|nuORF	ENST00000468499.5_1_7:99687333-99688626:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.3255004882812	2	530.326068	1058.63758	-0.11558	-6.1296E-05	-0.2571	-0.00013635	-0.37268	-0.00019764	530.3257803239003	128.78	2.4171	127.32	127	129.42	-1.4565					126	48	5	0	0	0	0.013607	3	12334	12310;12322;12334		157.33	31.515	1	843930			17792	6873	14490	14512	19808;19809;19810	19810					0.11060961176622186
IESPLFLKL	9	Unmodified	_IESPLFLKL_					0	0	0		ENST00000468499.5_1_7:99687333-99688626:+|nuORF;ENST00000496358.1_1_7:99686670-99688376:+|nuORF;ENSG00000168090|ENST00000303904|COPS6	ENST00000468499.5_1_7:99687333-99688626:+|nuORF	ENST00000468499.5_1_7:99687333-99688626:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.326068	1058.63758	0.34327	0.00018204	-0.23283	-0.00012348	0.11043	5.8566E-05	530.326263544473	129.4	0.29665	129.18	128.97	129.27	-0.22697	0.15842	-0.00012265	NaN	143.89	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11140			17793	6873	14490	14512							0.11060961176622186
IESSDVIRL	9	Unmodified	_IESSDVIRL_					0	0	0		ENSG00000122692|ENST00000397149|SMU1	ENSG00000122692|ENST00000397149|SMU1	ENSG00000122692|ENST00000397149|SMU1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.2904663085938	2	516.290214	1030.56587	1.9229	0.0009928	-0.19084	-9.8528E-05	1.7321	0.00089427	516.2899066155251	91.896	1.3273	91.896	91.016	92.343	0					81	31	4	0	0	0	0.055627	1	9911	9911		115.49	16.865	1	5068500			17794	3549	14491	14513	19811	19811					0.051814217520814054
IESSFWNF	8	Unmodified	_IESSFWNF_					0	0	0		nc|ENSG00000179115|Q9Y285-2|FARSA;ENSG00000179115|ENST00000314606|FARSA	nc|ENSG00000179115|Q9Y285-2|FARSA	nc|ENSG00000179115|Q9Y285-2|FARSA	MULTI-MSMS	OvCa99_classI_Rep5	1	515.2369995117188	2	515.23745	1028.46035	1.0492	0.0005406	1.9608	0.0010103	3.01	0.0015509	515.2380164348967	143.47	0.9913	143.47	143.22	144.21	0					33	19	5	0	0	0	0.20102	1	16775	16775		124.59	18.179	1	150990			17795	7803	14492	14514	19812	19812					-0.05274494373520611
IESSPEKRW	9	Unmodified	_IESSPEKRW_					0	0	0		tr|A0A553SR73|A0A553SR73_NIACIBifunctionaltranscriptionalactivator/DNArepairproteinAdaOS=NialliacirculansOX=1397GN=CEQ21_00500PE=4SV=1	tr|A0A553SR73|A0A553SR73_NIACIBifunctionaltranscriptionalactivator/DNArepairproteinAdaOS=NialliacirculansOX=1397GN=CEQ21_00500PE=4SV=1	tr|A0A553SR73|A0A553SR73_NIACIBifunctionaltranscriptionalactivator/DNArepairproteinAdaOS=NialliacirculansOX=1397GN=CEQ21_00500PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.2978515625	2	566.293288	1130.57202	0.72576	0.00041099	2.9383	0.0016639	3.664	0.0020749	566.2948856796027	105.45	0.94941	103.43	103.05	104	-2.0161					24	18	2	0	0	0	0.027462	1	9527	9527		34.173	1.3601	1	44751			17796	34233	14493	14515	19813	19813					0.011959399836314333
IESSPEKRW	9	Unmodified	_IESSPEKRW_					0	0	0		tr|A0A553SR73|A0A553SR73_NIACIBifunctionaltranscriptionalactivator/DNArepairproteinAdaOS=NialliacirculansOX=1397GN=CEQ21_00500PE=4SV=1	tr|A0A553SR73|A0A553SR73_NIACIBifunctionaltranscriptionalactivator/DNArepairproteinAdaOS=NialliacirculansOX=1397GN=CEQ21_00500PE=4SV=1	tr|A0A553SR73|A0A553SR73_NIACIBifunctionaltranscriptionalactivator/DNArepairproteinAdaOS=NialliacirculansOX=1397GN=CEQ21_00500PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	566.293288	1130.57202	0.20271	0.00011479	2.5404	0.0014386	2.7432	0.0015534	566.2934793483497	104.99	0.98701	103.65	103.11	104.09	-1.3482	0.10631	-0.00030558	NaN	34.173	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33188			17797	34233	14493	14515							0.011959399836314333
IESTKNEQL	9	Unmodified	_IESTKNEQL_					0	0	0		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	MULTI-MSMS	OvCa99_classI_Rep5	1	531.275634765625	2	531.277303	1060.54005	-0.2007	-0.00010662	0.093026	4.9423E-05	-0.10767	-5.7202E-05	531.2772426080979	43.205	1.0252	43.205	42.97	43.995	0					43	23	4	0	0	0	0.03923	1	2825	2825		127.46	20.454	1	4068900			17798	6212	14494	14516	19814	19814					0.012205275098040147
IESTTFELVI	10	Unmodified	_IESTTFELVI_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.3352661132812	2	576.313354	1150.61216	-0.39592	-0.00022818	-2.9432	-0.0016962	-3.3392	-0.0019244	576.3112095743386	30.344	0.24716	30.344	30.136	30.383	0					7	4	2	0	0	0	0.026802	1	1135	1135		26.693	8.3685	1	18436	+		17799	22731	14495	14517	19815	19815					0.04287441863516506
IESTTFELVI	10	Unmodified	_IESTTFELVI_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	576.313354	1150.61216	0.25593	0.0001475	-1.9144	-0.0011033	-1.6585	-0.00095582	576.8143466314775	33.478	0.54351	30.69	30.508	31.051	-2.7881	0.1729	0.00049905	NaN	26.693	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16109	+		17800	22731	14495	14517							0.04287441863516506
IESVLFLI	8	Unmodified	_IESVLFLI_					0	0	0		ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1;ANKFY1-SPINT2|1|fusion;ANKFY1-SPINT2|2|fusion	ENSG00000185722|ENST00000341657|ANKFY1	ENSG00000185722|ENST00000341657|ANKFY1	MULTI-SECPEP	OvCa99_classI_Rep5	1	468.27020263671875	2	467.286411	932.55827	1.5203	0.00071043	-4.1418	-0.0019354	-2.6215	-0.001225	467.28416139514934	81.757	0.40141	81.757	81.493	81.895	0					10	9	2	0	0	0	0.028476	1	8413	8413		9.4706	0.64823	1	160500			17801	8276	14496	14518	19816	19816					0.08929314222473295
IESVNTSAISI	11	Unmodified	_IESVNTSAISI_					0	0	0		tr|A0A7D6ZMW1|A0A7D6ZMW1_9CLOTCachedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13700PE=3SV=1	tr|A0A7D6ZMW1|A0A7D6ZMW1_9CLOTCachedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13700PE=3SV=1	tr|A0A7D6ZMW1|A0A7D6ZMW1_9CLOTCachedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13700PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3077392578125	2	567.306061	1132.59757	0.54664	0.00031011	-0.16772	-9.5149E-05	0.37892	0.00021496	567.3059047252544	63.844	1.3078	60.369	60.061	61.368	-3.475					75	26	4	0	0	0	0.50761	1	4505	4505		53.089	0.15226	1	1323600			17802	35668	14497	14519	19817	19817					0.03657369715392633
IESVNTSAISI	11	Unmodified	_IESVNTSAISI_					0	0	0		tr|A0A7D6ZMW1|A0A7D6ZMW1_9CLOTCachedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13700PE=3SV=1	tr|A0A7D6ZMW1|A0A7D6ZMW1_9CLOTCachedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13700PE=3SV=1	tr|A0A7D6ZMW1|A0A7D6ZMW1_9CLOTCachedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13700PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	567.306061	1132.59757	-2.0492	-0.0011625	3.5029	0.0019872	1.4537	0.00082471	567.3079634859582	63.038	1.4692	60.294	59.744	61.214	-2.7444	-0.037773	0.00067494	NaN	53.089	76	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	344320			17803	35668	14497	14519							0.03657369715392633
IESVVTAACQL	11	Unmodified	_IESVVTAACQL_					0	0	0		nc|ENSG00000120656|Q16514-2|TAF12;ENSG00000120656|ENST00000373824|TAF12;ENST00000471683.5_1_1:28916264-28944539:-|nuORF	nc|ENSG00000120656|Q16514-2|TAF12	nc|ENSG00000120656|Q16514-2|TAF12	MULTI-MSMS	OvCa9_classI_Rep3	3	567.2967529296875	2	567.297181	1132.57981	0.42871	0.0002432	0.22004	0.00012483	0.64875	0.00036803	567.2971466273868	129.51	1.1381	128.4	128.04	129.18	-1.1121					71	22	5	0	0	0	0.5804	1	10261	10261		46.457	4.0606	1	263930			17804	3438	14498	14520	19818	19818					0.018823311888581884
IESWLELFN	9	Unmodified	_IESWLELFN_					0	0	0			REV__nc|ENSG00000067369|Q12888|TP53BP1	REV__nc|ENSG00000067369|Q12888|TP53BP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.2582397460938	2	575.792589	1149.57063	1.5442	0.00088911	-0.51405	-0.00029599	1.0301	0.00059313	575.7920871117	137.99	1.8662	137.99	137.11	138.98	0					82	39	3	0	0	0	0.027462	1	16113	16113		35.618	0	1	99778	+		17805	16833	14499	14521	19819	19819					0.0018230589485028759
IESYKKPDN	9	Unmodified	_IESYKKPDN_					0	0	0		tr|A0A7D6ZIS8|A0A7D6ZIS8_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08270PE=4SV=1	tr|A0A7D6ZIS8|A0A7D6ZIS8_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08270PE=4SV=1	tr|A0A7D6ZIS8|A0A7D6ZIS8_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08270PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	547.279052734375	2	547.279846	1092.54514	0.31616	0.00017303	-0.063349	-3.4669E-05	0.25281	0.00013836	547.2793146196426	101.92	0.51756	101.92	101.65	102.17	0					19	11	2	0	0	0	0.070405	1	11335	11335		107.01	10.817	1	1269400			17806	35625	14500	14522	19820	19820					0.002568313724395921
IESYRTQLPK	10	Unmodified	_IESYRTQLPK_					0	0	0			REV__tr|A0A7D6VSV9|A0A7D6VSV9_9CLOTDUF2947familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06710PE=4SV=1	REV__tr|A0A7D6VSV9|A0A7D6VSV9_9CLOTDUF2947familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06710PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	617.8436889648438	2	617.843145	1233.67174	2.2198	0.0013715	-1.0245	-0.00063295	1.1954	0.00073856	617.8423820830945	65.909	1.1169	62.963	62.604	63.721	-2.9459					51	21	3	0	0	0	0.818	1	2679	2679		16.717	0	1	52290	+		17807	31546	14501	14523	19821	19821					0.06424757597551434
IETAIHSLI	9	Unmodified	_IETAIHSLI_					0	0	0		ENSG00000075539|ENST00000358350|FRYL;nc|ENSG00000075539|O94915-2|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-MSMS	OvCa9_classI_Rep2	2	498.789794921875	2	498.78985	995.565146	-0.69611	-0.00034721	0.14781	7.3725E-05	-0.5483	-0.00027349	498.7898766980179	115.24	3.0674	115.12	114.7	117.77	-0.11777					207	61	7	0	0	0	0.29717	1	11038	11038		63.306	3.0123	1	2910400			17808	1535	14502	14524	19822	19822					0.0671862710306641
IETDSNWVL	9	Unmodified	_IETDSNWVL_					0	0	0			REV__tr|A0A7D6VQ96|A0A7D6VQ96_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01940PE=4SV=1	REV__tr|A0A7D6VQ96|A0A7D6VQ96_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01940PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.2980346679688	2	538.766571	1075.51859	0.051726	2.7868E-05	-2.3982	-0.0012921	-2.3465	-0.0012642	538.7649840746844	77.374	1.6408	75.021	74.21	75.85	-2.3527					55	31	2	0	0	0	0.027426	1	4040	4040		53.351	0	1	179950	+		17809	31308	14503	14525	19823	19823					-0.016148575188935865
IETELEIIKER	11	Unmodified	_IETELEIIKER_					0	0	0			REV__nc|ENSG00000151849|Q9HC77-2|CENPJ	REV__nc|ENSG00000151849|Q9HC77-2|CENPJ	MULTI-SECPEP	OvCa9_classI_Rep4_	4	459.2463684082031	3	458.260925	1371.76095	-0.079651	-3.6501E-05	-1.7262	-0.00079103	-1.8058	-0.00082753	458.2608435141314	62.009	0.57666	58.551	58.336	58.913	-3.4577					19	11	2	0	0	0	0.026024	1	4301	4301		14.779	1.2709	1	28684	+		17810	20260	14504	14526	19824	19824					0.0899354776643122
IETGAKVFL	9	Unmodified	_IETGAKVFL_					0	0	0		ENSG00000132680|ENST00000368321|KHDC4;ENST00000478002.5_1_1:155885750-155895538:-|nuORF;nc|ENSG00000132680|Q7Z7F0-3|KHDC4;nc|ENSG00000132680|Q7Z7F0-2|KHDC4	ENSG00000132680|ENST00000368321|KHDC4	ENSG00000132680|ENST00000368321|KHDC4	MULTI-MSMS	OvCa99_classI_Rep5	1	489.2882385253906	2	489.286943	976.559333	2.8481	0.0013935	-0.34411	-0.00016837	2.504	0.0012252	489.28646919057627	89.687	0.66622	89.687	89.435	90.101	0					32	15	3	0	0	0	0.014964	1	9587	9587		153.04	41.388	1	1300200			17811	4162	14505	14527	19825	19825					0.07011528591374372
IETGAKVFL	9	Unmodified	_IETGAKVFL_					0	0	0		ENSG00000132680|ENST00000368321|KHDC4;ENST00000478002.5_1_1:155885750-155895538:-|nuORF;nc|ENSG00000132680|Q7Z7F0-3|KHDC4;nc|ENSG00000132680|Q7Z7F0-2|KHDC4	ENSG00000132680|ENST00000368321|KHDC4	ENSG00000132680|ENST00000368321|KHDC4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	489.286943	976.559333	1.5845	0.00077528	-2.6978	-0.00132	-1.1133	-0.00054471	489.28514396534797	91.291	1.0912	90.055	89.341	90.432	-1.2355	0.13447	-0.0022482	NaN	153.04	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30622			17812	4162	14505	14527							0.07011528591374372
IETGAKVFL	9	Unmodified	_IETGAKVFL_					0	0	0		ENSG00000132680|ENST00000368321|KHDC4;ENST00000478002.5_1_1:155885750-155895538:-|nuORF;nc|ENSG00000132680|Q7Z7F0-3|KHDC4;nc|ENSG00000132680|Q7Z7F0-2|KHDC4	ENSG00000132680|ENST00000368321|KHDC4	ENSG00000132680|ENST00000368321|KHDC4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	489.286943	976.559333	-1.4852	-0.00072669	0.38551	0.00018862	-1.0997	-0.00053807	489.28696298791795	91.94	0.74155	89.915	89.483	90.225	-2.0241	-0.0053269	0.000769	NaN	153.04	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49607			17813	4162	14505	14527							0.07011528591374372
IETGAKVFL	9	Unmodified	_IETGAKVFL_					0	0	0		ENSG00000132680|ENST00000368321|KHDC4;ENST00000478002.5_1_1:155885750-155895538:-|nuORF;nc|ENSG00000132680|Q7Z7F0-3|KHDC4;nc|ENSG00000132680|Q7Z7F0-2|KHDC4	ENSG00000132680|ENST00000368321|KHDC4	ENSG00000132680|ENST00000368321|KHDC4	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	489.286943	976.559333	-0.67859	-0.00033203	-0.50776	-0.00024844	-1.1864	-0.00058047	489.28666842151915	92.557	0.96235	90.025	89.425	90.387	-2.5323	0.10445	-0.00010512	NaN	153.04	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39102			17814	4162	14505	14527							0.07011528591374372
IETIANRII	9	Unmodified	_IETIANRII_					0	0	0		tr|A0A7D6W0A9|A0A7D6W0A9_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22660PE=4SV=1	tr|A0A7D6W0A9|A0A7D6W0A9_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22660PE=4SV=1	tr|A0A7D6W0A9|A0A7D6W0A9_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22660PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	521.8157348632812	2	521.816399	1041.61824	0.45107	0.00023538	-0.20287	-0.00010586	0.2482	0.00012951	521.8161309836105	110.4	1.9235	110.23	109.86	111.78	-0.17237					90	38	4	0	0	0	0.16524	1	10396	10396		82.305	10.428	1	440840			17815	35375	14506	14528	19826	19826					0.09910004885705348
IETKIKDL	8	Unmodified	_IETKIKDL_					0	0	0		tr|A0A7D7A6Z7|A0A7D7A6Z7_9CLOTdTDP-4-dehydrorhamnose3,5-epimeraseOS=ClostridiumintestinaleOX=36845GN=rfbCPE=3SV=1	tr|A0A7D7A6Z7|A0A7D7A6Z7_9CLOTdTDP-4-dehydrorhamnose3,5-epimeraseOS=ClostridiumintestinaleOX=36845GN=rfbCPE=3SV=1	tr|A0A7D7A6Z7|A0A7D7A6Z7_9CLOTdTDP-4-dehydrorhamnose3,5-epimeraseOS=ClostridiumintestinaleOX=36845GN=rfbCPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.76898193359375	2	480.292225	958.569897	0.20496	9.8442E-05	-0.59651	-0.0002865	-0.39154	-0.00018806	480.2919552598042	56.822	1.4255	53.477	53.171	54.596	-3.3449					56	27	4	0	0	0	0.028476	1	3653	3653		37.159	0	1	117190			17816	36202	14507	14529	19827	19827					0.08895511245793841
IETKSEEEL	9	Unmodified	_IETKSEEEL_					0	0	0		STK10-PCBD2|1|fusion;ENSG00000072786|ENST00000176763|STK10	STK10-PCBD2|1|fusion	STK10-PCBD2|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	539.2706298828125	2	539.269144	1076.52373	-0.67967	-0.00036652	0.16629	8.9678E-05	-0.51337	-0.00027685	539.2690350185279	52.012	0.89502	52.012	51.627	52.522	0					53	20	4	0	0	0	0.029147	1	4045	4045		136.27	40.078	1	3405000			17817	1479	14508	14530	19828	19828					-0.011465984469396062
IETLPSRRQII	11	Unmodified	_IETLPSRRQII_					0	0	0		tr|A0A553SST3|A0A553SST3_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03620PE=4SV=1	tr|A0A553SST3|A0A553SST3_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03620PE=4SV=1	tr|A0A553SST3|A0A553SST3_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03620PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	442.60198974609375	3	442.601504	1324.78268	0.47843	0.00021175	0.31784	0.00014067	0.79626	0.00035243	442.60159734649346	49.766	2.5262	47.006	46.523	49.049	-2.7603					125	50	5	0	0	0	0.65063	2	3185	3179;3185		40.058	4.88	1	549840			17818	34414	14509	14531	19829;19830	19830					0.1332839730566775
IETLQVDQL	9	Unmodified	_IETLQVDQL_					0	0	0			REV__ENST00000373773.7_1_20:35312857-35350138:-|nuORF	REV__ENST00000373773.7_1_20:35312857-35350138:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	529.7850341796875	2	529.790047	1057.56554	-0.64578	-0.00034213	0.1042	5.5204E-05	-0.54158	-0.00028692	529.7900451764816	68.011	1.7504	68.011	67.683	69.433	0					85	42	4	0	0	0	0.046778	1	6428	6428		120.87	11.39	1	18218000	+		17819	17471	14510	14532	19831	19831					0.03906002032226752
IETLRNATK	9	Unmodified	_IETLRNATK_					0	0	0		tr|A0A7D6ZIV5|A0A7D6ZIV5_9CLOTAspartateammonia-lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08580PE=4SV=1	tr|A0A7D6ZIV5|A0A7D6ZIV5_9CLOTAspartateammonia-lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08580PE=4SV=1	tr|A0A7D6ZIV5|A0A7D6ZIV5_9CLOTAspartateammonia-lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08580PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2702026367188	2	523.303655	1044.59276	-1.0854	-0.00056799	1.6096	0.00084231	0.52423	0.00027433	523.3044088046165	25.703	0.29967	25.703	25.544	25.843	0					9	5	2	0	0	0	0.027462	1	586	586		26.693	0	1	94995			17820	35626	14511	14533	19832	19832					0.07224530363282611
IETLTLAKN	9	Unmodified	_IETLTLAKN_					0	0	0		ENSG00000180535|ENST00000609256|BHLHA15	ENSG00000180535|ENST00000609256|BHLHA15	ENSG00000180535|ENST00000609256|BHLHA15	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.2441101074219	2	501.795132	1001.57571	-0.90685	-0.00045505	0.99309	0.00049833	0.086243	4.3276E-05	501.79501316490905	34.089	0.38086	34.089	34.017	34.398	0					10	7	2	0	0	0	0.027462	1	1634	1634		23.042	0	1	80787			17821	7877	14512	14534	19833	19833					0.07498609757465147
IETRDMQR	8	Unmodified	_IETRDMQR_					0	0	0			REV__ENST00000449200.1_1_22:40502501-40502987:-|nuORF	REV__ENST00000449200.1_1_22:40502501-40502987:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	524.7644653320312	2	524.76384	1047.51313	0.20193	0.00010597	3.8537	0.0020223	4.0557	0.0021283	524.7656821211727	129.4	1.9283	128.29	127.55	129.48	-1.1121					82	38	4	0	0	0	0.72896	1	10218	10218		37.159	5.2042	1	121170	+		17822	25944	14513	14535	19834	19834					-0.008728595823640717
IETRIKVCT	9	Unmodified	_IETRIKVCT_					0	0	0			REV__ENST00000328663.8_1_5:68662352-68665530:-|nuORF	REV__ENST00000328663.8_1_5:68662352-68665530:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8005981445312	2	531.802434	1061.59032	-2.0056	-0.0010666	-1.2207	-0.00064914	-3.2262	-0.0017157	531.8015751099314	118.31	1.2627	116.97	116.47	117.73	-1.3444					52	23	4	0	0	0	0.21231	1	11085	11085		74.255	13.283	1	303100	+		17823	24511	14514	14536	19835	19835					0.06198358633969292
IEVAAGKAKM	10	Unmodified	_IEVAAGKAKM_					0	0	0			REV__ENSG00000135220|ENST00000251566|UGT2A3	REV__ENSG00000135220|ENST00000251566|UGT2A3	MULTI-MSMS	OvCa9_classI_Rep2	2	509.29083251953125	2	509.291702	1016.56885	1.3151	0.00066975	2.4011	0.0012228	3.7161	0.0018926	509.2927862417461	29.04	0.88334	26.331	26.18	27.063	-2.7097					31	18	3	0	0	0	0.83261	1	694	694		14.865	0.20078	1	75325	+		17824	19266	14515	14537	19836	19836					0.06122973605260995
IEVCDENNR	9	Unmodified	_IEVCDENNR_					0	0	0			REV__SELP|p.V299Lfs*62|1|0.05|ENSG00000174175|chr1:169612284-169612284|T/-|frameshift_variant	REV__SELP|p.V299Lfs*62|1|0.05|ENSG00000174175|chr1:169612284-169612284|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	545.7971801757812	2	546.242938	1090.47132	-0.92979	-0.00050789	4.4834	0.0024491	3.5537	0.0019412	546.245297084156	87.927	1.4527	85.766	85.412	86.865	-2.1603					50	28	2	0	0	0	0.027462	1	5394	5394		35.618	11.416	1	332700	+		17825	21815	14516	14538	19837	19837					-0.07029460061539794
IEVDELVE	8	Unmodified	_IEVDELVE_					0	0	0			REV__tr|A0A553SH01|A0A553SH01_NIACICoproporphyrinogenIIIoxidaseOS=NialliacirculansOX=1397GN=CEQ21_11915PE=3SV=1	REV__tr|A0A553SH01|A0A553SH01_NIACICoproporphyrinogenIIIoxidaseOS=NialliacirculansOX=1397GN=CEQ21_11915PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.80352783203125	2	473.242398	944.470243	0.56406	0.00026694	1.7405	0.00082368	2.3046	0.0010906	473.24295625178564	67.242	0.43388	67.242	67.014	67.448	0					22	10	3	0	0	0	0.028476	1	6251	6251		12.959	0	1	610370	+		17826	29757	14517	14539	19838	19838					-0.004213511587977337
IEVDGKQVEL	10	Unmodified	_IEVDGKQVEL_					0	0	0		ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;ENSG00000155366|ENST00000339083|RHOC	ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;ENSG00000155366|ENST00000339083|RHOC	ENSG00000155366|ENST00000339083|RHOC	MULTI-MSMS	OvCa99_classI_Rep5	1	565.3097534179688	2	565.308603	1128.60265	2.6242	0.0014835	-0.80265	-0.00045375	1.8215	0.0010297	565.3081362905557	96.564	1.3578	96.564	96.253	97.611	0					109	31	5	0	0	0	0.029272	4	10594	10564;10594;10625;10661		136.99	32.932	1	77648000			17827	5104;5782;1376	14518	14540	19839;19840;19841;19842	19840					0.04349673578008151
IEVDGKQVEL	10	Unmodified	_IEVDGKQVEL_					0	0	0		ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;ENSG00000155366|ENST00000339083|RHOC	ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;ENSG00000155366|ENST00000339083|RHOC	ENSG00000155366|ENST00000339083|RHOC	MULTI-MSMS	OvCa9_classI_Rep2	2	565.3090209960938	2	565.308603	1128.60265	0.20207	0.00011423	-1.6397	-0.00092695	-1.4377	-0.00081272	565.3076159501649	96.83	2.3607	95.871	95.481	97.841	-0.95857					161	47	5	0	0	0	0.012025	6	8752	8735;8740;8746;8752;8758;8764		157.34	35.169	1	3204400			17828	5104;5782;1376	14518	14540	19843;19844;19845;19846;19847;19848	19846					0.04349673578008151
IEVDGKQVEL	10	Unmodified	_IEVDGKQVEL_					0	0	0		ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;ENSG00000155366|ENST00000339083|RHOC	ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;ENSG00000155366|ENST00000339083|RHOC	ENSG00000155366|ENST00000339083|RHOC	MULTI-MSMS	OvCa9_classI_Rep3	3	565.3090209960938	2	565.308603	1128.60265	-0.66072	-0.00037351	-0.72628	-0.00041058	-1.387	-0.00078408	565.3081769044711	97.601	2.4979	95.841	95.465	97.963	-1.7595					157	48	5	0	0	0	0.059086	8	6491	6467;6473;6479;6485;6491;6504;6516;6522		125.71	19.043	1	5088000			17829	5104;5782;1376	14518	14540	19849;19850;19851;19852;19853;19854;19855;19856	19853					0.04349673578008151
IEVDGKQVEL	10	Unmodified	_IEVDGKQVEL_					0	0	0		ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;ENSG00000155366|ENST00000339083|RHOC	ENSG00000067560|ENST00000418115|RHOA;ENSG00000143878|ENST00000272233|RHOB;ENSG00000155366|ENST00000339083|RHOC	ENSG00000155366|ENST00000339083|RHOC	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.3094482421875	2	565.308603	1128.60265	1.1361	0.00064226	-2.3807	-0.0013458	-1.2445	-0.00070355	565.3072068648027	98.126	2.7067	95.747	95.368	98.074	-2.3786					164	52	5	0	0	0	0.019275	5	8709	8698;8709;8721;8734;8758		148.69	35.279	1	4552600			17830	5104;5782;1376	14518	14540	19857;19858;19859;19860;19861	19858					0.04349673578008151
IEVDPDTKEML	11	Unmodified	_IEVDPDTKEML_					0	0	0		ENST00000396783.2_1_6:29457050-29457287:-|nuORF;ENST00000561068.5_3_15:83205554-83208094:-|nuORF;ENST00000423610.1_1_22:32435574-32435880:+|nuORF;ENSG00000182774|ENST00000647841|RPS17;ENST00000461663.1_1_5:116052154-116052343:+|nuORF	ENST00000396783.2_1_6:29457050-29457287:-|nuORF	ENST00000396783.2_1_6:29457050-29457287:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	645.3198852539062	2	645.318311	1288.62207	2.3611	0.0015237	-0.080995	-5.2268E-05	2.2801	0.0014714	645.3180797932873	93.896	0.84338	93.896	93.632	94.475	0					46	19	4	0	0	0	0.047208	1	10192	10192		117.53	23.928	1	5319000			17831	8024	14519	14541	19862	19862					-0.010697381934051009
IEVENKEVL	9	Unmodified	_IEVENKEVL_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	OvCa99_classI_Rep5	1	536.7972412109375	2	536.797872	1071.58119	2.4361	0.0013077	-0.27776	-0.0001491	2.1584	0.0011586	536.7976958414785	75.977	1.7387	75.977	75.723	77.461	0					127	42	5	0	0	0	0.07097	2	7576	7576;7649		106.68	8.2122	1	49451000			17832	7356	14520	14542	19863;19864	19863					0.04826288549293167
IEVENKEVL	9	Unmodified	_IEVENKEVL_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	OvCa9_classI_Rep3	3	536.7977294921875	2	536.797872	1071.58119	0.54428	0.00029217	-0.7658	-0.00041108	-0.22152	-0.00011891	536.7974015639339	77.895	1.3982	75.542	75.151	76.549	-2.3527					71	27	3	0	0	0	0.024645	2	4106	4106;4118		141.52	11.838	1	1043500			17833	7356	14520	14542	19865;19866	19865					0.04826288549293167
IEVENKEVL	9	Unmodified	_IEVENKEVL_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MATCH	OvCa9_classI_Rep2	2		2	536.797872	1071.58119	-1.085	-0.00058244	0.86484	0.00046424	-0.22018	-0.00011819	536.7981221161851	77.73	1.5823	75.941	75.416	76.998	-1.7894	0.025108	0.00068741	NaN	106.68	65	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	251430			17834	7356	14520	14542							0.04826288549293167
IEVFAVHKP	9	Unmodified	_IEVFAVHKP_					0	0	0			REV__tr|A0A553SHN7|A0A553SHN7_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=walKPE=4SV=1	REV__tr|A0A553SHN7|A0A553SHN7_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=walKPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.29833984375	2	520.300384	1038.58622	0.67301	0.00035017	1.1932	0.00062082	1.8662	0.00097099	520.3009154726994	115.03	2.2129	115.03	114.6	116.82	0					71	47	2	0	0	0	0.027433	1	13253	13253		51.335	8.9393	1	2049200	+		17835	29821	14521	14543	19867	19867					0.06846637202556849
IEVFIVFSDD	10	Unmodified	_IEVFIVFSDD_					0	0	0		L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|276|2|anti-sense	L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|276|2|anti-sense	L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|276|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	592.825927734375	2	592.297704	1182.58086	2.9652	0.0017563	-4.4213	-0.0026188	-1.4562	-0.00086249	592.2948720142168	97.239	0.85681	97.239	96.966	97.823	0					39	19	3	0	0	0	0.027056	1	10748	10748		20.947	3.582	1	472800			17836	14724	14522	14544	19868	19868					-0.003131311705601547
IEVFLPPRL	9	Unmodified	_IEVFLPPRL_					0	0	0		nc|ENSG00000013374|Q9Y5A7-2|NUB1;PRKAG2-NUB1|3|fusion;ENSG00000013374|ENST00000568733|NUB1;PRKAG2-NUB1|4|fusion;PRKAG2-NUB1|5|fusion;PRKAG2-NUB1|6|fusion;PRKAG2-NUB1|1|fusion;PRKAG2-NUB1|2|fusion	nc|ENSG00000013374|Q9Y5A7-2|NUB1	nc|ENSG00000013374|Q9Y5A7-2|NUB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.3096313476562	2	542.331685	1082.64882	1.1559	0.00062689	0.59644	0.00032347	1.7524	0.00095036	542.3318618289795	124.54	1.4029	124.54	123.97	125.37	0					50	31	2	0	0	0	0.027462	1	14374	14374		51.335	14.176	1	160800			17837	984	14523	14545	19869	19869					0.11079783270747612
IEVFLPPRL	9	Unmodified	_IEVFLPPRL_					0	0	0		nc|ENSG00000013374|Q9Y5A7-2|NUB1;PRKAG2-NUB1|3|fusion;ENSG00000013374|ENST00000568733|NUB1;PRKAG2-NUB1|4|fusion;PRKAG2-NUB1|5|fusion;PRKAG2-NUB1|6|fusion;PRKAG2-NUB1|1|fusion;PRKAG2-NUB1|2|fusion	nc|ENSG00000013374|Q9Y5A7-2|NUB1	nc|ENSG00000013374|Q9Y5A7-2|NUB1	MULTI-MSMS	OvCa9_classI_Rep2	2	542.333251953125	2	542.331685	1082.64882	-0.61708	-0.00033466	0.37074	0.00020106	-0.24633	-0.00013359	542.3317947730774	123.12	1.6768	122.9	122.12	123.79	-0.21803					68	33	3	0	0	0	0.44568	1	11910	11910		47.657	5.1829	1	74547			17838	984	14523	14545	19870	19870					0.11079783270747612
IEVFLPPRL	9	Unmodified	_IEVFLPPRL_					0	0	0		nc|ENSG00000013374|Q9Y5A7-2|NUB1;PRKAG2-NUB1|3|fusion;ENSG00000013374|ENST00000568733|NUB1;PRKAG2-NUB1|4|fusion;PRKAG2-NUB1|5|fusion;PRKAG2-NUB1|6|fusion;PRKAG2-NUB1|1|fusion;PRKAG2-NUB1|2|fusion	nc|ENSG00000013374|Q9Y5A7-2|NUB1	nc|ENSG00000013374|Q9Y5A7-2|NUB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.331787109375	2	542.331685	1082.64882	-1.3759	-0.00074621	1.2912	0.00070026	-0.084742	-4.5958E-05	542.3322005835712	124.52	2.8239	123.13	121.83	124.65	-1.3908					111	55	3	0	0	0	0.21231	3	11788	11727;11788;11797		74.255	24.813	1	117900			17839	984	14523	14545	19871;19872;19873	19872					0.11079783270747612
IEVIQPIET	9	Unmodified	_IEVIQPIET_					0	0	0			REV__ENSG00000171150|ENST00000394861|SOCS5	REV__ENSG00000171150|ENST00000394861|SOCS5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.8145141601562	2	521.294965	1040.57538	-0.95283	-0.0004967	-2.9926	-0.00156	-3.9454	-0.0020567	521.2954446843535	79.893	0.83057	77.142	76.891	77.722	-2.7514					40	16	3	0	0	0	0.027462	1	6515	6515		35.618	0	1	79201	+		17840	21599	14524	14546	19874	19874					0.056711900376285485
IEVIQPIET	9	Unmodified	_IEVIQPIET_					0	0	0			REV__ENSG00000171150|ENST00000394861|SOCS5	REV__ENSG00000171150|ENST00000394861|SOCS5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.294965	1040.57538	0.44931	0.00023422	-0.072303	-3.7691E-05	0.377	0.00019653	521.2948813903372	78.861	1.1589	77.121	76.459	77.617	-1.7398	-0.01032	0.0002136	NaN	35.618	46	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66863	+		17841	21599	14524	14546							0.056711900376285485
IEVLHNIKP	9	Unmodified	_IEVLHNIKP_					0	0	0		tr|A0A553SNE0|A0A553SNE0_NIACIDehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_24270PE=3SV=1	tr|A0A553SNE0|A0A553SNE0_NIACIDehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_24270PE=3SV=1	tr|A0A553SNE0|A0A553SNE0_NIACIDehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_24270PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8171997070312	2	531.818941	1061.62333	0.089047	4.7357E-05	-3.7428	-0.0019905	-3.6538	-0.0019431	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.62352	1	13874	13874		29.15	0	1	263230			17842	33917	14525	14547	19875	19875					0.09498308748334239
IEVLLGHGAD	10	Unmodified	_IEVLLGHGAD_					0	0	0		ENSG00000235098|ENST00000537107|ANKRD65	ENSG00000235098|ENST00000537107|ANKRD65	ENSG00000235098|ENST00000537107|ANKRD65	MULTI-SECPEP	OvCa9_classI_Rep2	2	511.84393310546875	2	512.277106	1022.53966	-0.38448	-0.00019696	0.072543	3.7162E-05	-0.31194	-0.0001598	512.277094825889	98.737	1.2322	97.844	96.974	98.206	-0.89305					28	24	2	0	0	0	0.026802	1	8946	8946		51.335	8.9393	1	13680			17843	9305	14526	14548	19876	19876					0.0292915258062294
IEVLLGHGAD	10	Unmodified	_IEVLLGHGAD_					0	0	0		ENSG00000235098|ENST00000537107|ANKRD65	ENSG00000235098|ENST00000537107|ANKRD65	ENSG00000235098|ENST00000537107|ANKRD65	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	512.277106	1022.53966	-1.2598	-0.00064534	1.4359	0.00073559	0.17617	9.0245E-05	512.2777263865457	100.22	0.87129	97.893	97.568	98.439	-2.3253	-0.09415	0.00049824	NaN	51.335	19	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21160			17844	9305	14526	14548							0.0292915258062294
IEVLRGDP	8	Unmodified	_IEVLRGDP_					0	0	0			REV__tr|A0A553SI56|A0A553SI56_NIACICTPsynthaseOS=NialliacirculansOX=1397GN=pyrGPE=3SV=1	REV__tr|A0A553SI56|A0A553SI56_NIACICTPsynthaseOS=NialliacirculansOX=1397GN=pyrGPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	449.7539367675781	2	449.753267	897.491981	-0.50056	-0.00022513	0.25983	0.00011686	-0.24072	-0.00010827	449.7533401968017	45.036	2.2807	41.998	41.613	43.894	-3.0385					75	43	3	0	0	0	0.67745	1	2301	2301		47.916	1.9636	1	1345400	+		17845	29863	14527	14549	19877	19877					0.03913498380427427
IEVRLKESAE	10	Unmodified	_IEVRLKESAE_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-SECPEP	OvCa9_classI_Rep3	3	587.294677734375	2	587.327328	1172.6401	-1.8768	-0.0011023	0.96934	0.00056932	-0.90747	-0.00053298	587.3281701896601	118.12	0.4957	117.09	116.93	117.43	-1.0324					12	9	2	0	0	0	0.026891	1	8938	8938		18.262	0	1	32169			17846	1144	14528	14550	19878	19878					0.06068764843644203
IEVTGITLI	9	Unmodified	_IEVTGITLI_					0	0	0		tr|A0A7D6W138|A0A7D6W138_9CLOTDUF1648domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02270PE=4SV=1	tr|A0A7D6W138|A0A7D6W138_9CLOTDUF1648domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02270PE=4SV=1	tr|A0A7D6W138|A0A7D6W138_9CLOTDUF1648domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02270PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	479.7939453125	2	479.794601	957.574648	1.6582	0.00079559	-1.9161	-0.00091933	-0.25791	-0.00012374	479.79349923259576	112.91	1.313	111.83	111.61	112.92	-1.0753					47	25	3	0	0	0	0.38529	1	8276	8276		53.351	1.0523	1	136520			17847	35398	14529	14551	19879	19879					0.09416395388586807
IEVTQNPEV	9	Unmodified	_IEVTQNPEV_					0	0	0			REV__ENST00000491031.5_1_2:25016788-25038721:+|nuORF	REV__ENST00000491031.5_1_2:25016788-25038721:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.833740234375	2	514.766571	1027.51859	2.0879	0.0010748	0.57291	0.00029492	2.6608	0.0013697	514.7667472841877	84.068	0.67072	84.068	83.841	84.512	0					31	15	3	0	0	0	0.027462	1	8777	8777		44.117	3.5442	1	2469800	+		17848	26667	14530	14552	19880	19880					0.005931424811024044
IEVVRKVT	8	Unmodified	_IEVVRKVT_					0	0	0		tr|A0A7D6VNG6|A0A7D6VNG6_9CLOTUDP-glucose4-epimeraseOS=ClostridiumintestinaleOX=36845GN=galEPE=3SV=1	tr|A0A7D6VNG6|A0A7D6VNG6_9CLOTUDP-glucose4-epimeraseOS=ClostridiumintestinaleOX=36845GN=galEPE=3SV=1	tr|A0A7D6VNG6|A0A7D6VNG6_9CLOTUDP-glucose4-epimeraseOS=ClostridiumintestinaleOX=36845GN=galEPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	473.2850646972656	2	472.300384	942.586216	1.3612	0.00064291	-1.7094	-0.00080734	-0.34815	-0.00016443	472.2995091370177	87.496	0.93458	86.065	85.791	86.726	-1.4311					34	18	2	0	0	0	0.028476	1	7705	7705		17.365	0	1	74681			17849	34703	14531	14553	19881	19881					0.11262637202582937
IEVVRKVT	8	Unmodified	_IEVVRKVT_					0	0	0		tr|A0A7D6VNG6|A0A7D6VNG6_9CLOTUDP-glucose4-epimeraseOS=ClostridiumintestinaleOX=36845GN=galEPE=3SV=1	tr|A0A7D6VNG6|A0A7D6VNG6_9CLOTUDP-glucose4-epimeraseOS=ClostridiumintestinaleOX=36845GN=galEPE=3SV=1	tr|A0A7D6VNG6|A0A7D6VNG6_9CLOTUDP-glucose4-epimeraseOS=ClostridiumintestinaleOX=36845GN=galEPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	472.300384	942.586216	0.13115	6.1943E-05	-0.26806	-0.00012661	-0.13691	-6.4662E-05	472.3000945759181	88.288	0.89529	86.157	85.854	86.75	-2.1309	0.012564	0.00071673	NaN	17.365	45	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118690			17850	34703	14531	14553							0.11262637202582937
IEVYKKAVE	9	Unmodified	_IEVYKKAVE_					0	0	0		ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4;nc|ENSG00000140463|Q96RK4-3|BBS4	ENSG00000140463|ENST00000268057|BBS4	ENSG00000140463|ENST00000268057|BBS4	MULTI-SECPEP	OvCa9_classI_Rep2	2	540.3344116210938	2	539.810782	1077.60701	-0.48832	-0.0002636	0.58765	0.00031722	0.099331	5.362E-05	539.8107372681247	110.79	1.1846	110.65	110.34	111.52	-0.13961					72	23	5	0	0	0	0.027462	1	10447	10447		47.657	13.485	1	140220			17851	4842	14532	14554	19882	19882					0.0713118279156788
IEVYSTNII	9	Unmodified	_IEVYSTNII_					0	0	0			REV__ENSG00000205496|ENST00000380371|OR51A2	REV__ENSG00000205496|ENST00000380371|OR51A2	MULTI-MSMS	OvCa99_classI_Rep5	1	526.2896728515625	2	526.28714	1050.55973	1.6308	0.00085829	0.57346	0.0003018	2.2043	0.0011601	526.2873091994309	110.91	0.88719	110.91	110.49	111.38	0					57	19	5	0	0	0	0.3249	1	12613	12613		60.118	7.1816	1	1572200	+		17852	23219	14533	14555	19883	19883					0.03646903520575506
IEWHISKP	8	Unmodified	_IEWHISKP_					0	0	0		nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000100485|ENST00000216373|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.3250427246094	2	505.276909	1008.53927	-1.16	-0.00058613	2.8998	0.0014652	1.7398	0.00087909	505.27955682278235	106.5	0.71827	104.49	104.1	104.82	-2.0161					22	13	2	0	0	0	0.028476	1	9693	9693		63.306	24.5	1	16162			17853	2076	14534	14556	19884	19884					0.035337776514325014
IEWPNDSI	8	Unmodified	_IEWPNDSI_					0	0	0			REV__ENST00000492813.1_1_1:46499563-46500009:+|nuORF	REV__ENST00000492813.1_1_1:46499563-46500009:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.7619323730469	2	487.234907	972.455261	0.37855	0.00018444	1.489	0.0007255	1.8676	0.00090995	487.2363431615458	60.603	0.6965	57.173	56.898	57.594	-3.43					20	13	2	0	0	0	0.028476	1	4084	4084		56.721	7.2795	1	25472	+		17854	26697	14535	14557	19885	19885					-0.03206798236146824
IEWQVQSPK	9	Unmodified	_IEWQVQSPK_					0	0	0			REV__ENST00000559663.1_1_17:37700526-37707325:+|nuORF	REV__ENST00000559663.1_1_17:37700526-37707325:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	557.79736328125	2	557.798206	1113.58186	0.12473	6.9573E-05	-0.20401	-0.0001138	-0.079283	-4.4224E-05	557.7978713463458	33.309	0.64268	33.309	32.989	33.632	0					28	12	3	0	0	0	0.44568	1	1524	1524		47.657	5.2612	1	243560	+		17855	27600	14536	14558	19886	19886					0.029611279890104925
IEYEHRAPE	9	Unmodified	_IEYEHRAPE_					0	0	0		ENSG00000168769|ENST00000380013|TET2	ENSG00000168769|ENST00000380013|TET2	ENSG00000168769|ENST00000380013|TET2	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.3008422851562	2	572.275095	1142.53564	1.0957	0.00062702	-3.1246	-0.0017881	-2.0289	-0.0011611	572.2735112876649	145.11	0.24637	145.11	144.89	145.13	0					5	4	2	0	0	0	0.027462	1	16942	16942		20.947	5.3051	1	12316			17856	6939	14537	14559	19887	19887					-0.029929369130968553
IEYFRSEE	8	Unmodified	_IEYFRSEE_					0	0	0			REV__PCDHGC5|p.F741Lfs*3|1|0.71|ENSG00000240764|chr5:141491459-141491460|-/T|frameshift_variant	REV__PCDHGC5|p.F741Lfs*3|1|0.71|ENSG00000240764|chr5:141491459-141491460|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.8168334960938	2	536.750921	1071.48729	-0.63393	-0.00034026	0.37422	0.00020086	-0.25971	-0.0001394	536.7509034050739	98.178	0.9614	95.799	95.521	96.483	-2.3786					49	18	4	0	0	0	0.028476	1	8796	8796		45.952	6.6991	1	205300	+		17857	23441	14538	14560	19888	19888					-0.045594305529675694
IEYFRSEE	8	Unmodified	_IEYFRSEE_					0	0	0			REV__PCDHGC5|p.F741Lfs*3|1|0.71|ENSG00000240764|chr5:141491459-141491460|-/T|frameshift_variant	REV__PCDHGC5|p.F741Lfs*3|1|0.71|ENSG00000240764|chr5:141491459-141491460|-/T|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	536.750921	1071.48729	-0.61662	-0.00033097	0.12409	6.6606E-05	-0.49252	-0.00026436	536.7508755611923	96.865	1.1805	95.907	95.481	96.661	-0.95857	0.041925	0.00031084	NaN	45.952	60	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126800	+		17858	23441	14538	14560							-0.045594305529675694
IEYFRSEE	8	Unmodified	_IEYFRSEE_					0	0	0			REV__PCDHGC5|p.F741Lfs*3|1|0.71|ENSG00000240764|chr5:141491459-141491460|-/T|frameshift_variant	REV__PCDHGC5|p.F741Lfs*3|1|0.71|ENSG00000240764|chr5:141491459-141491460|-/T|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	536.750921	1071.48729	0.64702	0.00034729	-1.2849	-0.00068969	-0.63791	-0.0003424	536.7501828020429	97.648	1.0027	95.889	95.569	96.572	-1.7595	0.023583	-0.0012018	NaN	45.952	49	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203320	+		17859	23441	14538	14560							-0.045594305529675694
IEYIKSIR	8	Unmodified	_IEYIKSIR_					0	0	0		tr|A0A7D6VRK4|A0A7D6VRK4_9CLOTDNAligaseOS=ClostridiumintestinaleOX=36845GN=ligAPE=3SV=1	tr|A0A7D6VRK4|A0A7D6VRK4_9CLOTDNAligaseOS=ClostridiumintestinaleOX=36845GN=ligAPE=3SV=1	tr|A0A7D6VRK4|A0A7D6VRK4_9CLOTDNAligaseOS=ClostridiumintestinaleOX=36845GN=ligAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	511.2897033691406	2	511.305667	1020.59678	-0.68244	-0.00034894	-2.1882	-0.0011188	-2.8706	-0.0014678	511.30381679513596	95.642	0.54141	93.814	93.582	94.123	-1.8286					17	10	2	0	0	0	0.028476	1	6235	6235		17.365	0	1	30214			17860	34938	14539	14561	19889	19889					0.08730619856987687
IEYIKSQPI	9	Unmodified	_IEYIKSQPI_					0	0	0		nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A	nc|ENSG00000130294|Q12756|KIF1A	nc|ENSG00000130294|Q12756|KIF1A	MULTI-SECPEP	OvCa9_classI_Rep2	2	545.7974853515625	2	545.810782	1089.60701	1.0916	0.00059582	2.4917	0.00136	3.5833	0.0019558	545.8119556856669	87.4	1.232	85.969	85.692	86.924	-1.4311					52	24	3	0	0	0	0.027462	1	7663	7663		45.952	21.433	1	174400			17861	3976	14540	14562	19890	19890					0.0657918279155183
IEYPIKELEE	10	Unmodified	_IEYPIKELEE_					0	0	0			REV__tr|A0A7D6ZZG6|A0A7D6ZZG6_9CLOT4Fe-4Sdiclusterdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20285PE=4SV=1	REV__tr|A0A7D6ZZG6|A0A7D6ZZG6_9CLOT4Fe-4Sdiclusterdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20285PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	631.830078125	2	631.829369	1261.64418	-0.75971	-0.00048001	1.4691	0.00092823	0.70939	0.00044822	631.8302084543957	95.793	1.8791	94.765	94.219	96.098	-1.0281					113	37	5	0	0	0	0.44722	1	8611	8611		61.691	14.464	1	755930	+		17862	32409	14541	14563	19891	19891					0.023828095466797095
IEYQDGVCL	9	Unmodified	_IEYQDGVCL_					0	0	0			REV__ENSG00000039523|ENST00000042381|RIPOR1	REV__ENSG00000039523|ENST00000042381|RIPOR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.312255859375	2	520.241875	1038.4692	0.95494	0.0004968	-0.66818	-0.00034762	0.28676	0.00014918	520.2423072342895	79.358	0.19269	79.358	79.202	79.394	0					6	4	2	0	0	0	0.027462	1	8068	8068		25.45	1.2474	1	355240	+		17863	16622	14542	14564	19892	19892					-0.04849888799344626
IEYQEKPLL	9	Unmodified	_IEYQEKPLL_					0	0	0		ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENST00000522359.2_1_11:61630757-61632750:+|nuORF	ENSG00000134824|ENST00000278840|FADS2	ENSG00000134824|ENST00000278840|FADS2	MULTI-MSMS	OvCa9_classI_Rep2	2	566.8173217773438	2	566.816064	1131.61758	0.38651	0.00021908	-1.3152	-0.00074546	-0.92867	-0.00052638	566.81513826698	86.838	2.9571	85.407	84.803	87.76	-1.4311					108	58	3	0	0	0	0.014622	4	7549	7549;7554;7559;7566		154.12	55.489	1	480000			17864	4334	14543	14565	19893;19894;19895;19896	19893					0.057031654459933634
IEYQEKPLL	9	Unmodified	_IEYQEKPLL_					0	0	0		ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENST00000522359.2_1_11:61630757-61632750:+|nuORF	ENSG00000134824|ENST00000278840|FADS2	ENSG00000134824|ENST00000278840|FADS2	MULTI-MSMS	OvCa9_classI_Rep3	3	566.8175659179688	2	566.816064	1131.61758	-0.92571	-0.00052471	0.72886	0.00041313	-0.19685	-0.00011158	566.8163495772532	87.497	1.435	85.32	84.834	86.269	-2.1768					77	27	4	0	0	0	0.0085876	4	5264	5264;5269;5275;5282		176.44	70.996	1	1025600			17865	4334	14543	14565	19897;19898;19899;19900	19897					0.057031654459933634
IEYQEKPLL	9	Unmodified	_IEYQEKPLL_					0	0	0		ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENST00000522359.2_1_11:61630757-61632750:+|nuORF	ENSG00000134824|ENST00000278840|FADS2	ENSG00000134824|ENST00000278840|FADS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.81787109375	2	566.816064	1131.61758	-1.6048	-0.00090962	-0.12957	-7.3443E-05	-1.7344	-0.00098307	566.8158468260268	87.949	1.511	85.346	84.874	86.385	-2.6027					75	29	4	0	0	0	0.012992	2	7486	7486;7496		159.28	68.675	1	928240			17866	4334	14543	14565	19901;19902	19901					0.057031654459933634
IFAKPINSK	9	Unmodified	_IFAKPINSK_					0	0	0		nc|ENSG00000189308|Q6MZP7-3|LIN54;ENSG00000189308|ENST00000340417|LIN54	nc|ENSG00000189308|Q6MZP7-3|LIN54	nc|ENSG00000189308|Q6MZP7-3|LIN54	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.306884765625	2	509.30821	1016.60187	0.24801	0.00012631	-0.25251	-0.00012861	-0.004503	-2.2934E-06	509.3077371139608	114.92	1.018	113.53	113.2	114.22	-1.3977					31	19	2	0	0	0	0.58665	1	10680	10680		33.516	1.5607	1	53408			17867	8547	14544	14566	19903	19903					0.09422923719614573
IFAKPINSK	9	Unmodified	_IFAKPINSK_					0	0	0		nc|ENSG00000189308|Q6MZP7-3|LIN54;ENSG00000189308|ENST00000340417|LIN54	nc|ENSG00000189308|Q6MZP7-3|LIN54	nc|ENSG00000189308|Q6MZP7-3|LIN54	MULTI-MATCH	OvCa9_classI_Rep2	2		2	509.30821	1016.60187	0.17793	9.062E-05	-0.46517	-0.00023692	-0.28724	-0.0001463	509.30773007806	113.7	0.98746	113.58	113.32	114.31	-0.11777	0.023542	-0.00034109	NaN	33.516	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43240			17868	8547	14544	14566							0.09422923719614573
IFAKPINSK	9	Unmodified	_IFAKPINSK_					0	0	0		nc|ENSG00000189308|Q6MZP7-3|LIN54;ENSG00000189308|ENST00000340417|LIN54	nc|ENSG00000189308|Q6MZP7-3|LIN54	nc|ENSG00000189308|Q6MZP7-3|LIN54	MULTI-MATCH	OvCa9_classI_Rep3	3		2	509.30821	1016.60187	-0.30549	-0.00015559	0.19046	9.7003E-05	-0.11503	-5.8583E-05	509.3080474677585	114.62	1.0367	113.56	113.25	114.29	-1.055	0.0054058	0.00032675	NaN	33.516	27	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54257			17869	8547	14544	14566							0.09422923719614573
IFALDGWLL	9	Unmodified	_IFALDGWLL_					0	0	0			REV__nc|ENSG00000168778|Q96GX1-2|TCTN2	REV__nc|ENSG00000168778|Q96GX1-2|TCTN2	MULTI-SECPEP	OvCa9_classI_Rep3	3	524.7847290039062	2	524.29731	1046.58007	-0.64331	-0.00033729	-4.0132	-0.0021041	-4.6566	-0.0024414	524.2946515533874	99.387	1.9092	97.702	96.388	98.297	-1.685					67	36	3	0	0	0	0.027462	1	6602	6602		26.796	10.789	1	153150	+		17870	21402	14545	14567	19904	19904					0.058641189710670005
IFAPGLFPL	9	Unmodified	_IFAPGLFPL_					0	0	0			REV__tr|A0A553SJJ8|A0A553SJJ8_NIACIDivalentmetalcationtransporterMntHOS=NialliacirculansOX=1397GN=mntHPE=3SV=1	REV__tr|A0A553SJJ8|A0A553SJJ8_NIACIDivalentmetalcationtransporterMntHOS=NialliacirculansOX=1397GN=mntHPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.7904968261719	2	487.789121	973.56369	3.5562	0.0017347	-1.4023	-0.00068404	2.1538	0.0010506	487.7882512057077	132.82	4.8462	131.32	130.38	135.22	-1.5015					236	97	4	0	0	0	0.61768	1	13094	13094		29.842	3.1486	1	143240	+		17871	30011	14546	14568	19905	19905					0.0758503780494948
IFATLYFG	8	Unmodified	_IFATLYFG_					0	0	0			REV__ENSG00000135953|ENST00000258436|MFSD9	REV__ENSG00000135953|ENST00000258436|MFSD9	MULTI-SECPEP	OvCa9_classI_Rep2	2	466.2821350097656	2	466.249829	930.485105	-0.080763	-3.7656E-05	-3.6692	-0.0017108	-3.75	-0.0017484	466.2486546273271	72.922	0.20757	70.522	70.378	70.585	-2.3999					5	3	2	0	0	0	0.028476	1	5917	5917		28.254	0	1	5914.1	+		17872	19340	14547	14569	19906	19906					0.017081854998536983
IFAVTKTAH	9	Unmodified	_IFAVTKTAH_					0	0	0		ENSG00000130477|ENST00000519716|UNC13A	ENSG00000130477|ENST00000519716|UNC13A	ENSG00000130477|ENST00000519716|UNC13A	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.277587890625	2	494.284734	986.554916	-0.32364	-0.00015997	-3.9103	-0.0019328	-4.2339	-0.0020927	494.2827154529704	30.222	0.59595	30.222	29.986	30.582	0					20	11	2	0	0	0	0.027418	1	1168	1168		68.787	5.4806	1	163620			17873	3987	14548	14570	19907	19907					0.06110064168467488
IFCFKFCPSD	10	Unmodified	_IFCFKFCPSD_					0	0	0		nc|ENSG00000162643|Q8IWG1-2|DNAI3;ENSG00000162643|ENST00000294664|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	MULTI-MSMS	OvCa99_classI_Rep5	1	603.7708129882812	2	603.769745	1205.52494	0.77681	0.00046902	0.48302	0.00029164	1.2598	0.00076065	603.7696100943778	160.6	1.4039	160.6	160.11	161.51	0					79	27	4	0	0	0	0.66721	1	18853	18853		34.173	2.5383	1	411500			17874	6210	14549	14571	19908	19908					-0.06960378883400153
IFDELCAVLF	10	Unmodified	_IFDELCAVLF_					0	0	0			REV__INADL-EIF3E|1|fusion	REV__INADL-EIF3E|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	585.298583984375	2	585.299193	1168.58383	-6.309	-0.0036926	3.4108	0.0019963	-2.8982	-0.0016963	585.3009430852495	158.32	1.01	156.73	156.43	157.44	-1.5858					64	32	3	0	0	0	0.61209	1	15653	15653		40.573	12.69	1	27296	+		17875	28305	14550	14572	19909	19909					0.006284206825739602
IFDFLGSIK	9	Unmodified	_IFDFLGSIK_					0	0	0			REV__tr|A0A7D6ZSH6|A0A7D6ZSH6_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15860PE=4SV=1	REV__tr|A0A7D6ZSH6|A0A7D6ZSH6_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15860PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.7413940429688	2	520.294768	1038.57498	-0.64967	-0.00033802	-3.5084	-0.0018254	-4.158	-0.0021634	520.2927579090912	56.406	0.95857	56.406	56.135	57.093	0					55	22	3	0	0	0	0.027418	1	4753	4753		36.447	0	1	1796500	+		17876	32187	14551	14573	19910	19910					0.05723815108422059
IFDGKIVI	8	Unmodified	_IFDGKIVI_					0	0	0		ENSG00000069431|ENST00000261200|ABCC9;ABCC9|p.D1415Gfs*2|1|0.26|ENSG00000069431|chr12:21809923-21809924|-/C|frameshift_variant;nc|ENSG00000069431|O60706|ABCC9	ENSG00000069431|ENST00000261200|ABCC9	ENSG00000069431|ENST00000261200|ABCC9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.7175598144531	2	452.778754	903.542954	-0.042939	-1.9442E-05	-3.1391	-0.0014213	-3.1821	-0.0014408	452.77729937652447	70.673	1.264	67.192	66.885	68.149	-3.4812					43	25	2	0	0	0	0.024229	1	5330	5330		115.46	9.0438	1	173210			17877	1409	14552	14574	19911	19911					0.0873244742526822
IFDGLYED	8	Unmodified	_IFDGLYED_					0	0	0			REV__ENSG00000197653|ENST00000673944|DNAH10	REV__ENSG00000197653|ENST00000673944|DNAH10	MULTI-MSMS	OvCa99_classI_Rep5	1	486.2232666015625	2	486.221465	970.428378	1.2318	0.00059891	-0.69968	-0.0003402	0.53208	0.00025871	486.22106056160516	149.76	0.44525	149.76	149.55	149.99	0					19	8	3	0	0	0	0.61758	1	17543	17543		60.294	10.269	1	63731	+		17878	22941	14553	14575	19912	19912					-0.05801906847329974
IFDKLDKTRTH	11	Unmodified	_IFDKLDKTRTH_					0	0	0			REV__ENSG00000183960|ENST00000328405|KCNH8	REV__ENSG00000183960|ENST00000328405|KCNH8	MULTI-MSMS	OvCa9_classI_Rep2	2	458.5896301269531	3	458.589376	1372.7463	-0.52575	-0.0002411	1.233	0.00056543	0.70721	0.00032432	458.5898478189458	54.048	2.6368	51.234	50.578	53.215	-2.8139					132	52	4	0	0	0	0.68299	1	3696	3696		35.496	2.4562	1	257930	+		17879	22395	14554	14576	19913	19913					0.07483520408936783
IFDKQVLQI	9	Unmodified	_IFDKQVLQI_					0	0	0			REV__tr|A0A7D6W1X6|A0A7D6W1X6_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04360PE=4SV=1	REV__tr|A0A7D6W1X6|A0A7D6W1X6_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04360PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	552.3289184570312	2	552.326599	1102.63865	2.7582	0.0015234	-0.56644	-0.00031286	2.1918	0.0012106	552.3260989498	116	0.64521	116	115.68	116.32	0					30	13	3	0	0	0	0.42676	1	13277	13277		49.442	5.0644	1	660790	+		17880	31891	14555	14577	19914	19914					0.09143175545546
IFDKYGENGL	10	Unmodified	_IFDKYGENGL_					0	0	0		tr|A0A553SRA4|A0A553SRA4_NIACIClassISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_00670PE=3SV=1	tr|A0A553SRA4|A0A553SRA4_NIACIClassISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_00670PE=3SV=1	tr|A0A553SRA4|A0A553SRA4_NIACIClassISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_00670PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.2902221679688	2	578.287671	1154.56079	2.6605	0.0015385	0.16844	9.7409E-05	2.8289	0.0016359	578.2875433162809	133.74	3.4984	132.22	131.46	134.96	-1.5257					171	70	3	0	0	0	0.6349	1	12993	12993		37.812	1.3648	1	165290			17881	34243	14556	14578	19915	19915					-0.010308821105127208
IFDLQKINN	9	Unmodified	_IFDLQKINN_					0	0	0			REV__tr|A0A7D6ZZ78|A0A7D6ZZ78_9CLOTYgiQfamilyradicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05060PE=3SV=1	REV__tr|A0A7D6ZZ78|A0A7D6ZZ78_9CLOTYgiQfamilyradicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05060PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.762451171875	2	552.806031	1103.59751	-0.65391	-0.00036149	0.047208	2.6097E-05	-0.6067	-0.00033539	552.8057812225617	80.388	1.9091	77.677	77.027	78.936	-2.7106					92	38	4	0	0	0	0.027403	1	6628	6628		63.534	8.8115	1	225310	+		17882	32400	14557	14579	19916	19916					0.04985414506040797
IFDLQKINN	9	Unmodified	_IFDLQKINN_					0	0	0			REV__tr|A0A7D6ZZ78|A0A7D6ZZ78_9CLOTYgiQfamilyradicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05060PE=3SV=1	REV__tr|A0A7D6ZZ78|A0A7D6ZZ78_9CLOTYgiQfamilyradicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05060PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	552.806031	1103.59751	-0.23781	-0.00013146	-0.31986	-0.00017682	-0.55767	-0.00030829	552.8057687449692	79.896	1.468	77.556	76.852	78.32	-2.3399	-0.10299	0.00034307	NaN	63.534	70	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228700	+		17883	32400	14557	14579							0.04985414506040797
IFDPVRGID	9	Unmodified	_IFDPVRGID_					0	0	0			REV__ENSG00000198826|ENST00000361627|ARHGAP11A	REV__ENSG00000198826|ENST00000361627|ARHGAP11A	MULTI-MSMS	OvCa99_classI_Rep5	1	516.2794189453125	2	516.279649	1030.54475	1.6494	0.00085154	0.82615	0.00042653	2.4755	0.0012781	516.2801555185453	87.221	0.5317	87.221	86.888	87.42	0					28	12	4	0	0	0	0.33652	1	9227	9227		58.782	3.2778	1	1635800	+		17884	23070	14558	14580	19917	19917					0.030694564432451443
IFDPVRGID	9	Unmodified	_IFDPVRGID_					0	0	0			REV__ENSG00000198826|ENST00000361627|ARHGAP11A	REV__ENSG00000198826|ENST00000361627|ARHGAP11A	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	516.279649	1030.54475	1.6494	0.00085154	0.82615	0.00042653	2.4755	0.0012781	516.2801555185453	87.221	0.5317	87.221	86.888	87.42	0	0	0	NaN	58.782	28	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1635800	+		17885	23070	14558	14580							0.030694564432451443
IFDVQSCYP	9	Unmodified	_IFDVQSCYP_					0	0	0			REV__nc|ENSG00000186638|Q5T7B8-4|KIF24	REV__nc|ENSG00000186638|Q5T7B8-4|KIF24	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.2462158203125	2	536.244418	1070.47428	-0.42872	-0.0002299	2.9982	0.0016078	2.5695	0.0013779	536.2460282370151	114.83	3.7432	113.44	113.1	116.84	-1.3977					114	72	2	0	0	0	0.22621	1	10683	10683		71.877	6.0743	1	971930	+		17886	22604	14559	14581	19918	19918					-0.05813584936731786
IFDYIQWKYRE	11	Unmodified	_IFDYIQWKYRE_					0	0	0		ENSG00000070501|ENST00000265421|POLB	ENSG00000070501|ENST00000265421|POLB	ENSG00000070501|ENST00000265421|POLB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3117065429688	3	520.933031	1559.77726	0.53965	0.00028112	-1.2859	-0.00066984	-0.7462	-0.00038872	521.2670969601959	84.39	0.65256	81.727	81.594	82.247	-2.6629					16	13	2	0	0	0	0.026444	1	7117	7117		10.998	0	1	49174			17887	1427	14560	14582	19919	19919					0.019766737231748266
IFEDEKKKM	9	Unmodified	_IFEDEKKKM_					0	0	0			REV__tr|A0A553SL03|A0A553SL03_NIACIAlpha/betahydrolaseOS=NialliacirculansOX=1397GN=CEQ21_19690PE=4SV=1	REV__tr|A0A553SL03|A0A553SL03_NIACIAlpha/betahydrolaseOS=NialliacirculansOX=1397GN=CEQ21_19690PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3081665039062	2	584.307549	1166.60055	-1.1294	-0.00065991	0.58218	0.00034017	-0.54721	-0.00031974	584.3077482595431	100.35	3.8138	99.518	98.467	102.28	-0.83052					189	76	4	0	0	0	0.29717	1	9217	9217		63.306	1.615	1	413450	+		17888	30172	14561	14583	19920	19920					0.023909215685307572
IFEFLSMDL	9	Unmodified	_IFEFLSMDL_					0	0	0		chr10:60778668-60780141|406|12.96|0.53|4.61|+|ENST00000448257|CDK1,CDK1;ENSG00000170312|ENST00000395284|CDK1;ENST00000475504.6_1_10:62539923-62545554:+|nuORF;nc|ENSG00000170312|P06493-2|CDK1;chr10:60785787-60791890|413|13.74|0.51|4.76|+|ENST00000373809|CDK1,CDK1	chr10:60778668-60780141|406|12.96|0.53|4.61|+|ENST00000448257|CDK1,CDK1;nc|ENSG00000170312|P06493-2|CDK1	chr10:60778668-60780141|406|12.96|0.53|4.61|+|ENST00000448257|CDK1,CDK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.27001953125	2	557.778093	1113.54163	2.9119	0.0016242	-1.5305	-0.00085369	1.3814	0.00077053	557.77716867562	94.56	0.63792	94.56	94.094	94.732	0					23	14	2	0	0	0	0.027462	1	10237	10237		31.955	5.2619	1	227340			17889	278;279	14562	14584	19921	19921					-0.010595547257935323
IFEQIISDN	9	Unmodified	_IFEQIISDN_					0	0	0			REV__ENSG00000124657|ENST00000244623|OR2B6	REV__ENSG00000124657|ENST00000244623|OR2B6	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.7593994140625	2	539.774396	1077.53424	1.3351	0.00072067	1.9485	0.0010517	3.2836	0.0017724	540.2769986396504	138.65	0.67123	138.65	138.31	138.98	0					22	13	2	0	0	0	0.027462	1	16161	16161		24.519	0.99649	1	59628	+		17890	18700	14563	14585	19922	19922					-0.0014257100183385774
IFETPDLIGG	10	Unmodified	_IFETPDLIGG_					0	0	0		nc|ENSG00000166006|Q96PR1-4|KCNC2;nc|ENSG00000166006|Q96PR1-5|KCNC2;nc|ENSG00000166006|Q96PR1-3|KCNC2;nc|ENSG00000166006|Q96PR1-6|KCNC2;nc|ENSG00000166006|Q96PR1-2|KCNC2;ENSG00000166006|ENST00000549446|KCNC2	nc|ENSG00000166006|Q96PR1-4|KCNC2	nc|ENSG00000166006|Q96PR1-4|KCNC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.8143920898438	2	531.279315	1060.54408	0.4769	0.00025337	-3.9955	-0.0021227	-3.5186	-0.0018694	531.2767477234529	72.472	0.66302	72.472	72.291	72.954	0					29	16	2	0	0	0	0.026723	1	7087	7087		90.777	21.99	1	2318400			17891	15153	14564	14586	19923	19923					0.01622617003522464
IFFATYVLT	9	Unmodified	_IFFATYVLT_					0	0	0			REV__tr|A0A7D6VXH4|A0A7D6VXH4_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12060PE=4SV=1	REV__tr|A0A7D6VXH4|A0A7D6VXH4_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12060PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.78173828125	2	537.797143	1073.57973	-0.04287	-2.3055E-05	-3.2767	-0.0017622	-3.3195	-0.0017852	537.7952168584172	105.14	0.78726	105.14	104.83	105.62	0					29	17	2	0	0	0	0.027462	1	11790	11790		38.806	8.9646	1	2088700	+		17892	31778	14565	14587	19924	19924					0.045886992511896096
IFFENHPYF	9	Unmodified	_IFFENHPYF_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	OvCa99_classI_Rep5	1	607.2893676757812	2	607.287474	1212.5604	1.9682	0.0011953	-0.21469	-0.00013038	1.7535	0.0010649	607.2872021397683	117.08	1.7976	117.08	116.64	118.44	0					71	38	4	0	0	0	0.37135	1	13420	13420		54.776	15.523	1	662550			17893	5904	14566	14588	19925	19925					-0.03738257039731252
IFFFFFVN	8	Unmodified	_IFFFFFVN_					0	0	0		ENST00000325642.7_1_14:60759216-60759402:+|nuORF	ENST00000325642.7_1_14:60759216-60759402:+|nuORF	ENST00000325642.7_1_14:60759216-60759402:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.8270874023438	2	540.781296	1079.54804	1.6728	0.00090463	-1.2646	-0.00068385	0.40826	0.00022078	541.2810110721924	79.39	0.6249	79.39	79.202	79.827	0					20	15	2	0	0	0	0.028476	1	8144	8144		21.702	0	1	305340			17894	10403	14567	14589	19926	19926					0.01144751287915824
IFFFGIIAI	9	Unmodified	_IFFFGIIAI_					0	0	0		tr|A0A7D6ZVK3|A0A7D6ZVK3_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15335PE=4SV=1	tr|A0A7D6ZVK3|A0A7D6ZVK3_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15335PE=4SV=1	tr|A0A7D6ZVK3|A0A7D6ZVK3_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15335PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.7921752929688	2	520.812596	1039.61064	-0.69169	-0.00036024	-1.8541	-0.00096565	-2.5458	-0.0013259	521.3125251786188	96.557	0.98023	94.728	94.571	95.551	-1.8286					27	18	2	0	0	0	0.027462	1	6362	6362		29.842	0	1	43290			17895	35804	14568	14590	19927	19927					0.09241897356082518
IFFFPVAI	8	Unmodified	_IFFFPVAI_					0	0	0			REV__tr|A0A7D6ZZW5|A0A7D6ZZW5_9CLOTTraB/GumNfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07785PE=4SV=1	REV__tr|A0A7D6ZZW5|A0A7D6ZZW5_9CLOTTraB/GumNfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07785PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.2241516113281	2	477.278389	952.542226	0.17022	8.1241E-05	2.836	0.0013536	3.0062	0.0014348	477.2796555598478	32.772	1.2774	32.772	32.403	33.681	0					54	25	3	0	0	0	0.028476	1	1496	1496		43.626	0	1	980030	+		17896	32426	14569	14591	19928	19928					0.0640565277622045
IFFGGLVFKF	10	Unmodified	_IFFGGLVFKF_					0	0	0		ENST00000480937.5_1_1:25666968-25687193:+|nuORF;ENSG00000183726|ENST00000374358|TMEM50A	ENST00000480937.5_1_1:25666968-25687193:+|nuORF	ENST00000480937.5_1_1:25666968-25687193:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	587.83740234375	2	587.836603	1173.65865	0.6953	0.00040873	1.2513	0.00073553	1.9466	0.0011443	587.8371376856198	158.57	1.8145	158.57	158.19	160.01	0					105	37	4	0	0	0	0.16729	3	18566	18566;18587;18617		99.375	24.332	1	403250			17897	8097	14570	14592	19929;19930;19931	19929					0.07876971276095901
IFFIDELIQ	9	Unmodified	_IFFIDELIQ_					0	0	0			REV__ENST00000586135.1_2_18:34773574-34802187:+|nuORF	REV__ENST00000586135.1_2_18:34773574-34802187:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2759399414062	2	569.313158	1136.61176	-0.056256	-3.2027E-05	4.2034	0.002393	4.1471	0.002361	569.8163172441541	56.642	0.12083	56.642	56.581	56.702	0					4	2	2	0	0	0	0.027455	1	4708	4708		51.335	22.186	1	91310	+		17898	20191	14571	14593	19932	19932					0.04892066934326067
IFFLSERKT	9	Unmodified	_IFFLSERKT_					0	0	0			REV__tr|A0A7D6VTX4|A0A7D6VTX4_9CLOTTerBfamilytelluriteresistanceproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09440PE=4SV=1	REV__tr|A0A7D6VTX4|A0A7D6VTX4_9CLOTTerBfamilytelluriteresistanceproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09440PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	569.8339233398438	2	570.824224	1139.63389	-0.74221	-0.00042367	1.4131	0.00080661	0.67084	0.00038293	570.8250446130439	97.769	0.44467	96.811	96.464	96.908	-0.95857					14	8	2	0	0	0	0.027462	1	8872	8872		34.173	5.023	1	14616	+		17899	31636	14573	14594	19933	19933					0.06966291402750358
IFFLVKHTE	9	Unmodified	_IFFLVKHTE_					0	0	0			REV__tr|A0A553SG80|A0A553SG80_NIACITranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_10365PE=3SV=1	REV__tr|A0A553SG80|A0A553SG80_NIACITranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_10365PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3201293945312	2	567.321317	1132.62808	-1.5919	-0.00090313	-1.6613	-0.00094251	-3.2533	-0.0018456	567.3204758129912	84.581	1.3452	83.034	82.745	84.091	-1.5462					89	26	5	0	0	0	0.14998	1	7333	7333		84.916	22.808	1	1915100	+		17900	29672	14574	14595	19934	19934					0.06707192891099112
IFFLVKHTE	9	Unmodified	_IFFLVKHTE_					0	0	0			REV__tr|A0A553SG80|A0A553SG80_NIACITranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_10365PE=3SV=1	REV__tr|A0A553SG80|A0A553SG80_NIACITranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_10365PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3214111328125	2	567.321317	1132.62808	-1.2368	-0.00070167	-2.3376	-0.0013261	-3.5744	-0.0020278	567.3201786014721	85.424	2.0958	83.204	82.744	84.84	-2.2204					134	41	5	0	0	0	0.14998	1	5066	5066		84.916	5.2029	1	1900400	+		17901	29672	14574	14595	19935	19935					0.06707192891099112
IFFRTSHNL	9	Unmodified	_IFFRTSHNL_					0	0	0		ENSG00000079435|ENST00000244289|LIPE;nc|ENSG00000079435|Q05469-2|LIPE	ENSG00000079435|ENST00000244289|LIPE	ENSG00000079435|ENST00000244289|LIPE	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.3213500976562	2	567.806365	1133.59818	1.9329	0.0010975	-3.3789	-0.0019186	-1.446	-0.00082107	567.8053895519193	85.792	0.58878	83.146	82.755	83.344	-2.6463					14	11	2	0	0	0	0.027433	1	7246	7246		64.207	0	1	14249			17902	1616	14575	14596	19936	19936					0.03672253945751436
IFFSQLVTF	9	Unmodified	_IFFSQLVTF_					0	0	0		ENST00000533739.1_1_11:89951170-89956122:-|nuORF	ENST00000533739.1_1_11:89951170-89956122:-|nuORF	ENST00000533739.1_1_11:89951170-89956122:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.2731323242188	2	551.302593	1100.59063	-0.41526	-0.00022893	0.42431	0.00023392	0.0090512	4.99E-06	551.303655004481	51.056	0.171	51.056	50.949	51.12	0					5	3	2	0	0	0	0.027462	1	3910	3910		35.618	3.6634	1	96837			17903	13344	14576	14597	19937	19937					0.04436101625469746
IFFTDRVLL	9	Unmodified	_IFFTDRVLL_					0	0	0		ENST00000550329.1_1_12:51401937-51404511:-|nuORF	ENST00000550329.1_1_12:51401937-51404511:-|nuORF	ENST00000550329.1_1_12:51401937-51404511:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.8216552734375	2	562.329142	1122.64373	2.2569	0.0012691	-0.35387	-0.00019899	1.9031	0.0010702	562.8299987242693	138.03	0.67809	138.03	137.82	138.5	0					28	14	3	0	0	0	0.027462	1	16090	16090		47.916	10.756	1	224480			17904	13585	14577	14598	19938	19938					0.08731479408129417
IFFTRWLKK	9	Unmodified	_IFFTRWLKK_					0	0	0			REV__ENSG00000177706|ENST00000313766|FAM20C	REV__ENSG00000177706|ENST00000313766|FAM20C	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8677978515625	2	619.874051	1237.73355	-3.1788	-0.0019704	-4.2096	-0.0026094	-7.3883	-0.0045798	619.8711859647292	147.21	3.9856	146.98	144.83	148.82	-0.22696					207	79	4	0	0	0	0.70177	1	14771	14771		17.365	1.7232	1	163200	+		17905	22023	14578	14599	19939	19939					0.12419153807331895
IFFVVEED	8	Unmodified	_IFFVVEED_					0	0	0		tr|A0A553SK30|A0A553SK30_NIACIdITP/XTPpyrophosphataseOS=NialliacirculansOX=1397GN=CEQ21_18090PE=3SV=1	tr|A0A553SK30|A0A553SK30_NIACIdITP/XTPpyrophosphataseOS=NialliacirculansOX=1397GN=CEQ21_18090PE=3SV=1	tr|A0A553SK30|A0A553SK30_NIACIdITP/XTPpyrophosphataseOS=NialliacirculansOX=1397GN=CEQ21_18090PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	499.2495422363281	2	499.247483	996.480414	2.0486	0.0010228	1.567	0.0007823	3.6156	0.0018051	499.24810602999514	120.28	3.1366	120.28	120	123.14	0					173	70	4	0	0	0	0.68312	1	13977	13977		46.766	0	1	6606300			17906	33571	14579	14600	19940	19940					-0.017967434335673715
IFFWVFWPIII	11	Unmodified	_IFFWVFWPIII_					0	0	0			REV__tr|A0A553SUN9|A0A553SUN9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03095PE=4SV=1	REV__tr|A0A553SUN9|A0A553SUN9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03095PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	494.7940368652344	3	494.284565	1479.83187	0.54148	0.00026765	-1.5132	-0.00074795	-0.97172	-0.00048031	494.2832630714517	96.363	0.49677	95.335	95.063	95.559	-1.0281					21	9	3	0	0	0	0.026296	1	8707	8707		20.837	14.516	1	24002	+		17907	31102	14580	14601	19941	19941					0.11114337332560353
IFFYNERDK	9	Unmodified	_IFFYNERDK_					0	0	0			REV__tr|A0A7D7A4K2|A0A7D7A4K2_9CLOT6-phospho-beta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=ascBPE=3SV=1	REV__tr|A0A7D7A4K2|A0A7D7A4K2_9CLOT6-phospho-beta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=ascBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	615.40966796875	2	616.308938	1230.60332	1.1832	0.00072923	-0.44163	-0.00027218	0.7416	0.00045705	616.3083824532551	119.46	0.53233	119.46	119.05	119.59	0					17	12	2	0	0	0	0.027462	1	13665	13665		45.952	9.5052	1	212140	+		17908	32612	14581	14602	19942	19942					-0.0027548698230930313
IFGKKCARL	9	Unmodified	_IFGKKCARL_					0	0	0			REV__ENSG00000003436|ENST00000233156|TFPI	REV__ENSG00000003436|ENST00000233156|TFPI	MULTI-MSMS	OvCa99_classI_Rep5	1	518.3101196289062	2	518.310229	1034.60591	1.4152	0.00073351	-4.4618	-0.0023126	-3.0466	-0.0015791	518.3077734354781	126	0.56187	126	125.71	126.28	0					21	11	2	0	0	0	0.46377	1	14573	14573		45.952	3.5558	1	186350	+		17909	16374	14582	14603	19943	19943					0.08998689941654447
IFGLFKKLIIA	11	Unmodified	_IFGLFKKLIIA_					0	0	0		tr|A0A7D6W3B5|A0A7D6W3B5_9CLOTMBOATfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09250PE=3SV=1	tr|A0A7D6W3B5|A0A7D6W3B5_9CLOTMBOATfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09250PE=3SV=1	tr|A0A7D6W3B5|A0A7D6W3B5_9CLOTMBOATfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09250PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	421.2249755859375	3	421.612682	1261.81622	-0.74791	-0.00031533	-2.4567	-0.0010358	-3.2046	-0.0013511	421.61165610943505	46.638	0.82303	43.565	43.294	44.117	-3.0724					31	15	3	0	0	0	0.02642	1	2434	2434		10.104	0.8921	1	35900			17910	35450	14583	14604	19944	19944					0.1957805081551669
IFGRADVQDW	10	Unmodified	_IFGRADVQDW_					0	0	0		nc|ENSG00000146039|Q9Y2C5-3|SLC17A4;nc|ENSG00000146039|Q9Y2C5-2|SLC17A4;ENSG00000146039|ENST00000377905|SLC17A4	nc|ENSG00000146039|Q9Y2C5-3|SLC17A4	nc|ENSG00000146039|Q9Y2C5-3|SLC17A4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	603.8287963867188	2	603.798737	1205.58292	-0.033658	-2.0323E-05	4.2197	0.0025479	4.1861	0.0025275	603.8008323498153	73.838	0.66145	70.454	70.232	70.894	-3.3843					24	13	3	0	0	0	0.026867	1	5765	5765		42.864	12.295	1	75927			17911	5260	14584	14605	19945	19945					-0.011646576421071586
IFGRFMQT	8	Unmodified	_IFGRFMQT_					0	0	0			REV__ENSG00000146966|ENST00000496613|DENND2A	REV__ENSG00000146966|ENST00000496613|DENND2A	MSMS	OvCa99_classI_Rep5	1	500.25921630859375	2	500.257662	998.500772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.01	1	32.01	31.51	32.51	0								0	0	0	0.30129	1	1362	1362		47.916	3.3845	1		+		17912	20036	14585	14606	19946	19946					0.0014614874526159838
IFGTVIWVIL	10	Unmodified	_IFGTVIWVIL_					0	0	0			REV__ENSG00000092068|ENST00000316902|SLC7A8	REV__ENSG00000092068|ENST00000316902|SLC7A8	MULTI-MSMS	OvCa9_classI_Rep4_	4	580.3544921875	2	580.857535	1159.70052	-2.7377	-0.0015902	-1.325	-0.00076966	-4.0627	-0.0023599	580.8565741017269	108.19	2.7355	106.46	105.89	108.63	-1.7256					97	32	4	0	0	0	0.49049	1	9916	9916		55.504	16.698	1	360850	+		17913	17262	14586	14607	19947	19947					0.12705526964646197
IFGVVDHLKQ	10	Unmodified	_IFGVVDHLKQ_					0	0	0		nc|ENSG00000103994|Q9H2Y7-2|ZNF106;nc|ENSG00000103994|Q9H2Y7|ZNF106;ENSG00000103994|ENST00000564754|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	nc|ENSG00000103994|Q9H2Y7-2|ZNF106	MULTI-SECPEP	OvCa9_classI_Rep4_	4	578.7461547851562	2	578.329673	1154.64479	-1.2237	-0.00070771	-2.9602	-0.0017119	-4.1839	-0.0024197	578.3279664968765	51.171	1.0557	47.998	47.721	48.776	-3.1734					36	20	2	0	0	0	0.026956	1	2986	2986		34.173	0	1	231240			17914	2346	14587	14608	19948	19948					0.07365693777023807
IFHEVPLKF	9	Unmodified	_IFHEVPLKF_					0	0	0		ENSG00000128915|ENST00000261520|ICE2;ENST00000483823.1_1_3:88997907-88998639:+|nuORF	ENSG00000128915|ENST00000261520|ICE2;ENST00000483823.1_1_3:88997907-88998639:+|nuORF	ENSG00000128915|ENST00000261520|ICE2	MULTI-MSMS	OvCa99_classI_Rep5	1	565.3309936523438	2	565.32386	1128.63317	2.8935	0.0016358	-0.90528	-0.00051177	1.9883	0.001124	565.3233701710938	96.121	0.84016	96.121	95.785	96.625	0					39	19	3	0	0	0	0.26076	1	10513	10513		67.494	16.158	1	827600			17915	3912;12590	14588	14609	19949	19949					0.07399496753691892
IFHMDKCNSW	10	Unmodified	_IFHMDKCNSW_					0	0	0		ENST00000560184.5_1_15:90408823-90437190:-|nuORF;ENST00000560224.1_1_15:90408823-90446582:-|nuORF	ENST00000560184.5_1_15:90408823-90437190:-|nuORF	ENST00000560184.5_1_15:90408823-90437190:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	640.7825317382812	2	640.781176	1279.5478	0.052396	3.3575E-05	-0.58491	-0.0003748	-0.53251	-0.00034122	640.7808469072285	60.328	1.5038	60.328	59.997	61.501	0					85	35	5	0	0	0	0.35465	1	5238	5238		74.255	1.3758	1	9372600			17916	13730	14589	14610	19950	19950					-0.08079359765929439
IFHPGGVL	8	Unmodified	_IFHPGGVL_					0	0	0			REV__nc|ENSG00000145113|Q99102-2|MUC4	REV__nc|ENSG00000145113|Q99102-2|MUC4	MULTI-MSMS	OvCa99_classI_Rep5	1	420.24371337890625	2	420.242338	838.470124	2.4163	0.0010155	0.39691	0.0001668	2.8133	0.0011822	420.2423335337517	82.243	0.80212	82.243	81.979	82.781	0					42	18	3	0	0	0	0.7543	1	8515	8515		24.504	0	1	1046100	+		17917	28912	14590	14611	19951	19951					0.044427384225286914
IFHPGGVL	8	Unmodified	_IFHPGGVL_					0	0	0			REV__nc|ENSG00000145113|Q99102-2|MUC4	REV__nc|ENSG00000145113|Q99102-2|MUC4	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	420.242338	838.470124	2.4163	0.0010155	0.39691	0.0001668	2.8133	0.0011822	420.2423335337517	82.243	0.80212	82.243	81.979	82.781	0	-0.11223	-0.0011234	NaN	24.504	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1046100	+		17918	28912	14590	14611							0.044427384225286914
IFHPGGVL	8	Unmodified	_IFHPGGVL_					0	0	0			REV__nc|ENSG00000145113|Q99102-2|MUC4	REV__nc|ENSG00000145113|Q99102-2|MUC4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	420.242338	838.470124	-0.54927	-0.00023083	6.5415	0.002749	5.9922	0.0025182	420.24418590908397	83.944	0.87878	82.398	82.122	83.001	-1.5462	0.042589	0.004041	NaN	24.504	26	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12814	+		17919	28912	14590	14611							0.044427384225286914
IFHPGGVL	8	Unmodified	_IFHPGGVL_					0	0	0			REV__nc|ENSG00000145113|Q99102-2|MUC4	REV__nc|ENSG00000145113|Q99102-2|MUC4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	420.242338	838.470124	-0.36546	-0.00015358	4.2809	0.001799	3.9155	0.0016455	420.24397110677825	84.686	1.0669	82.425	81.927	82.994	-2.261	0.069639	0.002141	NaN	24.504	29	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16071	+		17920	28912	14590	14611							0.044427384225286914
IFHPRFLL	8	Unmodified	_IFHPRFLL_					0	0	0			REV__L1MB3_dup13915|chr15:92712904-92713305:+|1.0833414765900655|0.0952392372427663|3.51|429.0|28|2|anti-sense	REV__L1MB3_dup13915|chr15:92712904-92713305:+|1.0833414765900655|0.0952392372427663|3.51|429.0|28|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.3355712890625	2	521.813462	1041.61237	0.20253	0.00010568	4.2914	0.0022393	4.494	0.002345	521.8152652680728	107.67	1.3449	106.4	105.9	107.25	-1.267					41	25	2	0	0	0	0.028476	1	7688	7688		44.531	16.277	1	125530	+		17921	28410	14591	14612	19952	19952					0.09322951164722326
IFHPRFLL	8	Unmodified	_IFHPRFLL_					0	0	0			REV__L1MB3_dup13915|chr15:92712904-92713305:+|1.0833414765900655|0.0952392372427663|3.51|429.0|28|2|anti-sense	REV__L1MB3_dup13915|chr15:92712904-92713305:+|1.0833414765900655|0.0952392372427663|3.51|429.0|28|2|anti-sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.813462	1041.61237	0.21021	0.00010969	4.3126	0.0022504	4.5228	0.0023601	521.8150905005996	106.5	0.99321	106.19	105.93	106.92	-0.30836	-0.18089	-0.00081757	NaN	44.531	32	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149170	+		17922	28410	14591	14612							0.09322951164722326
IFHPRFLL	8	Unmodified	_IFHPRFLL_					0	0	0			REV__L1MB3_dup13915|chr15:92712904-92713305:+|1.0833414765900655|0.0952392372427663|3.51|429.0|28|2|anti-sense	REV__L1MB3_dup13915|chr15:92712904-92713305:+|1.0833414765900655|0.0952392372427663|3.51|429.0|28|2|anti-sense	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	521.813462	1041.61237	-2.4875	-0.001298	5.8113	0.0030324	3.3238	0.0017344	521.8162278792055	108.25	1.0582	106.53	106.22	107.28	-1.7256	0.15309	0.00074648	NaN	44.531	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173670	+		17923	28410	14591	14612							0.09322951164722326
IFHPVCVGHF	10	Unmodified	_IFHPVCVGHF_					0	0	0			REV__L1PA11_dup580|chr2:214963946-214966413:+|1.0797114683140654|0.244988541359441|2.14|429.0|139|3|anti-sense	REV__L1PA11_dup580|chr2:214963946-214966413:+|1.0797114683140654|0.244988541359441|2.14|429.0|139|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	578.2894287109375	2	578.292037	1154.56952	-5.4888	-0.0031741	1.4252	0.00082417	-4.0636	-0.0023499	578.2927598597663	159.22	4.1126	158.99	158.53	162.64	-0.22697					262	82	5	0	0	0	0.65806	1	16423	16423		35.201	3.6709	1	1073400	+		17924	28460	14592	14613	19953	19953					-0.0015818695503639901
IFHQPMASG	9	Unmodified	_IFHQPMASG_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-SECPEP	OvCa9_classI_Rep2	2	494.3144836425781	2	494.23947	986.464386	-1.2586	-0.00062206	3.2326	0.0015977	1.9739	0.0009756	494.24080748645474	119.04	0.79008	118.89	118.53	119.32	-0.14755					29	15	3	0	0	0	0.027462	1	11459	11459		23.042	3.6825	1	38143			17925	4072	14593	14614	19954	19954					-0.02938728151457326
IFHVLYIETL	10	Unmodified	_IFHVLYIETL_					0	0	0			REV__ENST00000452973.6_1_6:142540853-142541078:+|nuORF	REV__ENST00000452973.6_1_6:142540853-142541078:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	624.3232421875	2	624.355357	1246.69616	1.8768	0.0011718	1.1559	0.00072168	3.0326	0.0018934	624.8585496884942	133.86	0.52345	133.86	133.58	134.1	0					13	10	2	0	0	0	0.026697	1	15545	15545		55.504	7.5886	1	57417	+		17926	25988	14594	14615	19955	19955					0.08268017751061052
IFIDAKKLF	9	Unmodified	_IFIDAKKLF_					0	0	0			REV__nc|ENSG00000173083|Q9Y251-4|HPSE	REV__nc|ENSG00000173083|Q9Y251-4|HPSE	MULTI-MSMS	OvCa99_classI_Rep5	1	547.8352661132812	2	547.83406	1093.65357	1.434	0.00078558	0.16901	9.2591E-05	1.603	0.00087817	547.8339684252273	148.67	1.771	148.67	148.37	150.14	0					93	35	4	0	0	0	0.37135	1	17430	17430		54.776	1.4249	1	1096700	+		17927	21745	14595	14616	19956	19956					0.11048667413501789
IFIDPGYQTF	10	Unmodified	_IFIDPGYQTF_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-MSMS	OvCa99_classI_Rep5	1	600.802490234375	2	600.800414	1199.58628	2.2663	0.0013616	-0.33943	-0.00020393	1.9269	0.0011577	600.8001206147972	136.84	2.3448	136.84	136.54	138.88	0					129	49	5	0	0	0	0.044418	3	15965	15942;15965;15989		131.62	45.242	1	2658400			17928	3496	14596	14617	19957;19958;19959	19958					-0.005534075881087119
IFIEAVHKL	9	Unmodified	_IFIEAVHKL_					0	0	0		tr|A0A553SPC6|A0A553SPC6_NIACIUDP-N-acetylmuramoylalanine--D-glutamateligaseOS=NialliacirculansOX=1397GN=murDPE=3SV=1	tr|A0A553SPC6|A0A553SPC6_NIACIUDP-N-acetylmuramoylalanine--D-glutamateligaseOS=NialliacirculansOX=1397GN=murDPE=3SV=1	tr|A0A553SPC6|A0A553SPC6_NIACIUDP-N-acetylmuramoylalanine--D-glutamateligaseOS=NialliacirculansOX=1397GN=murDPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	535.326171875	2	535.32386	1068.63317	2.1078	0.0011283	0.36169	0.00019362	2.4695	0.001322	535.3240026819121	120.38	0.42167	120.38	120.18	120.61	0					17	10	2	0	0	0	0.068524	1	13836	13836		108.09	14.081	1	460050			17929	34029	14597	14618	19960	19960					0.10159496753703934
IFIFELLGS	9	Unmodified	_IFIFELLGS_					0	0	0		ENSG00000204869|ENST00000377697|IGFL4	ENSG00000204869|ENST00000377697|IGFL4	ENSG00000204869|ENST00000377697|IGFL4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.820556640625	2	519.797143	1037.57973	3.3524	0.0017426	3.4931	0.0018157	6.8455	0.0035583	519.7969320887682	133.05	0.83546	131.53	131.17	132	-1.5216					32	16	3	0	0	0	0.027462	1	12863	12863		31.955	7.7521	1	42730			17930	9034	14598	14619	19961	19961					0.06244699251192287
IFIFFNGKI	9	Unmodified	_IFIFFNGKI_					0	0	0			REV__tr|A0A7D6VSJ1|A0A7D6VSJ1_9CLOTPHdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22940PE=4SV=1	REV__tr|A0A7D6VSJ1|A0A7D6VSJ1_9CLOTPHdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22940PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.3487548828125	2	549.820953	1097.62735	0.53469	0.00029398	-2.3294	-0.0012807	-1.7947	-0.00098675	550.3211203659379	159.38	0.43474	159.38	159.14	159.57	0					11	8	2	0	0	0	0.027441	1	18699	18699		65.803	36.654	1	25869	+		17931	31507	14599	14620	19962	19962					0.0824439824205001
IFIGPDAQGSY	11	Unmodified	_IFIGPDAQGSY_					0	0	0			REV__nc|ENSG00000170324|Q68DX3-2|FRMPD2	REV__nc|ENSG00000170324|Q68DX3-2|FRMPD2	MULTI-MSMS	OvCa99_classI_Rep5	1	584.287841796875	2	584.287671	1166.56079	0.34428	0.00020116	0.73208	0.00042775	1.0764	0.00062891	584.2879945129355	103.32	1.2645	103.32	103.01	104.28	0					83	29	6	0	0	0	0.41398	1	11533	11533		60.118	7.1816	1	10677000	+		17932	21532	14600	14621	19963	19963					-0.015828821105060342
IFIIMFGII	9	Unmodified	_IFIIMFGII_					0	0	0		tr|A0A553SUK7|A0A553SUK7_NIACIRodshape-determiningproteinRodAOS=NialliacirculansOX=1397GN=CEQ21_01370PE=4SV=1	tr|A0A553SUK7|A0A553SUK7_NIACIRodshape-determiningproteinRodAOS=NialliacirculansOX=1397GN=CEQ21_01370PE=4SV=1	tr|A0A553SUK7|A0A553SUK7_NIACIRodshape-determiningproteinRodAOS=NialliacirculansOX=1397GN=CEQ21_01370PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.8259887695312	2	533.822107	1065.62966	-0.35702	-0.00019059	3.6285	0.001937	3.2715	0.0017464	533.8238556232325	97.698	0.95781	95.32	95.013	95.971	-2.3786					46	18	4	0	0	0	0.42921	1	8670	8670		49.211	5.094	1	166630			17933	34618	14601	14622	19964	19964					0.09947110655480174
IFIIMFGII	9	Unmodified	_IFIIMFGII_					0	0	0		tr|A0A553SUK7|A0A553SUK7_NIACIRodshape-determiningproteinRodAOS=NialliacirculansOX=1397GN=CEQ21_01370PE=4SV=1	tr|A0A553SUK7|A0A553SUK7_NIACIRodshape-determiningproteinRodAOS=NialliacirculansOX=1397GN=CEQ21_01370PE=4SV=1	tr|A0A553SUK7|A0A553SUK7_NIACIRodshape-determiningproteinRodAOS=NialliacirculansOX=1397GN=CEQ21_01370PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	533.822107	1065.62966	-0.68929	-0.00036796	-3.6261	-0.0019357	-4.3154	-0.0023037	533.8199930854213	96.622	0.7373	95.663	95.331	96.068	-0.95857	0.2191	-0.0071884	NaN	49.211	23	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26346			17934	34618	14601	14622							0.09947110655480174
IFIIMFGII	9	Unmodified	_IFIIMFGII_					0	0	0		tr|A0A553SUK7|A0A553SUK7_NIACIRodshape-determiningproteinRodAOS=NialliacirculansOX=1397GN=CEQ21_01370PE=4SV=1	tr|A0A553SUK7|A0A553SUK7_NIACIRodshape-determiningproteinRodAOS=NialliacirculansOX=1397GN=CEQ21_01370PE=4SV=1	tr|A0A553SUK7|A0A553SUK7_NIACIRodshape-determiningproteinRodAOS=NialliacirculansOX=1397GN=CEQ21_01370PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	533.822107	1065.62966	-0.0044864	-2.395E-06	3.4472	0.0018402	3.4427	0.0018378	533.8238016890319	97.109	1.8813	95.349	95.001	96.882	-1.7595	-0.094894	0.0003634	NaN	49.211	61	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209810			17935	34618	14601	14622							0.09947110655480174
IFILQAHSH	9	Unmodified	_IFILQAHSH_					0	0	0			REV__AluJo_dup70790|chr19:14488925-14489222:-|1.100240579763319|0.4898040708497028|1.17|429.0|25|3|anti-sense	REV__AluJo_dup70790|chr19:14488925-14489222:-|1.100240579763319|0.4898040708497028|1.17|429.0|25|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	533.3485107421875	2	533.295633	1064.57671	-0.34417	-0.00018354	-0.34328	-0.00018307	-0.68745	-0.00036661	533.2952061865993	93.954	0.96661	91.992	91.729	92.696	-1.9617					34	18	2	0	0	0	0.027433	1	6078	6078		54.776	1.4249	1	68936	+		17936	15598	14602	14623	19965	19965					0.04700868917029766
IFILTGLVLG	10	Unmodified	_IFILTGLVLG_					0	0	0			REV__ENSG00000135740|ENST00000299798|SLC9A5	REV__ENSG00000135740|ENST00000299798|SLC9A5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.3051147460938	2	523.336436	1044.65832	-2.0215	-0.0010579	2.1536	0.0011271	0.13211	6.9139E-05	523.3375312750356	119.35	0.57117	118	117.83	118.4	-1.3444					16	10	2	0	0	0	0.026768	1	11229	11229		40.573	0	1	13397	+		17937	19316	14603	14624	19966	19966					0.13777551556268008
IFILTGLVLG	10	Unmodified	_IFILTGLVLG_					0	0	0			REV__ENSG00000135740|ENST00000299798|SLC9A5	REV__ENSG00000135740|ENST00000299798|SLC9A5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	523.336436	1044.65832	0.11549	6.0439E-05	-0.303	-0.00015857	-0.18751	-9.8132E-05	523.3360809308703	119.15	0.44794	118.12	117.88	118.33	-1.0271	0.058749	-0.00093217	NaN	47.916	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10480	+		17938	19316	14603	14624							0.13777551556268008
IFIMFGIQF	9	Unmodified	_IFIMFGIQF_					0	0	0			REV__tr|A0A553SP08|A0A553SP08_NIACIFlagellarbiosyntheticproteinFliPOS=NialliacirculansOX=1397GN=fliPPE=3SV=1	REV__tr|A0A553SP08|A0A553SP08_NIACIFlagellarbiosyntheticproteinFliPOS=NialliacirculansOX=1397GN=fliPPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.3233642578125	2	558.301539	1114.58852	3.4813	0.0019436	-2.563	-0.001431	0.91825	0.00051266	558.3009778075415	102.53	0.46555	102.53	102.21	102.68	0					20	10	3	0	0	0	0.027456	1	11401	11401		57.811	9.8518	1	256840	+		17939	30475	14604	14625	19967	19967					0.03581349616024454
IFINPKKHA	9	Unmodified	_IFINPKKHA_					0	0	0			REV__tr|A0A7D7A136|A0A7D7A136_9CLOT4-hydroxybutyrate--acetyl-CoACoAtransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12420PE=3SV=1	REV__tr|A0A7D7A136|A0A7D7A136_9CLOT4-hydroxybutyrate--acetyl-CoACoAtransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12420PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	534.322265625	2	534.321651	1066.62875	0.60918	0.0003255	-0.33631	-0.0001797	0.27287	0.0001458	534.3213583150491	160.45	0.65208	160.45	160.11	160.76	0					29	12	3	0	0	0	0.52083	1	18811	18811		40.573	0	1	119970	+		17940	32469	14605	14626	19968	19968					0.09810032330801732
IFIPIYSLN	9	Unmodified	_IFIPIYSLN_					0	0	0		L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|269|2|anti-sense	L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|269|2|anti-sense	L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|269|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.30859375	2	540.310418	1078.60628	-2.0627	-0.0011145	-1.3134	-0.00070964	-3.3761	-0.0018241	540.3096376945349	119.42	3.6472	118.08	117.68	121.33	-1.3444					173	70	5	0	0	0	0.29717	1	11333	11333		63.306	7.8021	1	472280			17941	14655	14606	14627	19969	19969					0.07012388142516102
IFIPVKYI	8	Unmodified	_IFIPVKYI_					0	0	0			REV__ENST00000507556.5_2_4:76465124-76467720:+|nuORF	REV__ENST00000507556.5_2_4:76465124-76467720:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	496.791259765625	2	496.812596	991.61064	-0.76939	-0.00038224	-3.5364	-0.0017569	-4.3058	-0.0021392	496.8106979307127	116.17	0.99073	116.05	115.69	116.68	-0.11777					46	19	3	0	0	0	0.028476	1	11131	11131		23.037	0	1	121590	+		17942	26900	14607	14628	19970	19970					0.11449897356089878
IFIPVKYI	8	Unmodified	_IFIPVKYI_					0	0	0			REV__ENST00000507556.5_2_4:76465124-76467720:+|nuORF	REV__ENST00000507556.5_2_4:76465124-76467720:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	496.812596	991.61064	-0.997	-0.00049532	-3.2999	-0.0016395	-4.2969	-0.0021348	496.8108325253396	117.2	1.436	116.17	115.84	117.28	-1.0324	-0.035617	0.00021007	NaN	14.664	62	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148620	+		17943	26900	14607	14628							0.11449897356089878
IFIQNSKLYF	10	Unmodified	_IFIQNSKLYF_					0	0	0		ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	MSMS	OvCa99_classI_Rep5	1	636.8545532226562	2	636.852981	1271.69141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.27	1	116.27	115.77	116.77	0								0	0	0	1.5605E-14	1	13298	13298		180.87	74.454	1				17944	4690	14608	14629	19971	19971					0.06643133608326934
IFIRKLRII	9	Unmodified	_IFIRKLRII_					0	0	0		NAPG|p.E180Kfs*23|1|0.1|ENSG00000134265|chr18:10546354-10546354|A/-|frameshift_variant	NAPG|p.E180Kfs*23|1|0.1|ENSG00000134265|chr18:10546354-10546354|A/-|frameshift_variant	NAPG|p.E180Kfs*23|1|0.1|ENSG00000134265|chr18:10546354-10546354|A/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.8145141601562	2	586.405518	1170.79648	0.70476	0.00041327	-0.55216	-0.00032379	0.1526	8.9487E-05	586.4033355311668	131.98	0.4194	131.98	131.76	132.18	0					13	8	3	0	0	0	0.027462	1	15309	15309		40.573	0	1	52492			17945	14855	14609	14630	19972	19972					0.21791719595398718
IFIRNVLLF	9	Unmodified	_IFIRNVLLF_					0	0	0		ENSG00000141699|ENST00000309428|RETREG3	ENSG00000141699|ENST00000309428|RETREG3	ENSG00000141699|ENST00000309428|RETREG3	MULTI-MSMS	OvCa99_classI_Rep5	1	567.8574829101562	2	567.855327	1133.6961	0.94009	0.00053384	1.2371	0.00070251	2.1772	0.0012364	567.855944524341	140.04	3.3684	140.04	139.61	142.98	0					163	68	5	0	0	0	0.013398	5	16350	16329;16350;16374;16421;16445		157.99	30.832	1	2052200			17946	4935	14610	14631	19973;19974;19975;19976;19977	19974					0.1346006254175336
IFIRTLLWN	9	Unmodified	_IFIRTLLWN_					0	0	0			REV__EPHA5|p.S116_S124del|1|0.27|ENSG00000145242|chr4:65602177-65602203|CTGGAAGCACCTTCATTGGAGATCCAA/-|inframe_deletion	REV__EPHA5|p.S116_S124del|1|0.27|ENSG00000145242|chr4:65602177-65602203|CTGGAAGCACCTTCATTGGAGATCCAA/-|inframe_deletion	MULTI-MSMS	OvCa99_classI_Rep5	1	588.3541259765625	2	588.350409	1174.68626	2.0486	0.0012053	1.1662	0.00068615	3.2148	0.0018914	588.3510658663984	120.41	0.69229	120.41	120.27	120.97	0					19	16	2	0	0	0	0.27546	1	13835	13835		65.803	4.8312	1	1114300	+		17947	28110	14611	14632	19978	19978					0.10590874536387673
IFISKHLFE	9	Unmodified	_IFISKHLFE_					0	0	0		ENSG00000150054|ENST00000683449|MPP7;nc|ENSG00000150054|Q5T2T1-2|MPP7	ENSG00000150054|ENST00000683449|MPP7	ENSG00000150054|ENST00000683449|MPP7	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3198852539062	2	567.321317	1132.62808	-1.2368	-0.00070167	-2.3376	-0.0013261	-3.5744	-0.0020278	567.3201786014721	85.424	2.0958	83.204	82.744	84.84	-2.2204					134	41	5	0	0	0	0.074342	1	5038	5038		104.75	8.5561	1	1900400			17948	5499	14612	14633	19979	19979					0.06707192891099112
IFIVHKPPE	9	Unmodified	_IFIVHKPPE_					0	0	0			REV__tr|A0A553SHJ7|A0A553SHJ7_NIACIDNApolymeraseIIIsubunitgamma/tauOS=NialliacirculansOX=1397GN=dnaXPE=3SV=1	REV__tr|A0A553SHJ7|A0A553SHJ7_NIACIDNApolymeraseIIIsubunitgamma/tauOS=NialliacirculansOX=1397GN=dnaXPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.8194580078125	2	540.316035	1078.61752	1.8839	0.0010179	0.11554	6.2428E-05	1.9995	0.0010803	540.3158627835132	134.51	0.54221	134.51	134.2	134.74	0					25	11	3	0	0	0	0.027462	1	15617	15617		38.806	3.6541	1	616180	+		17949	29808	14613	14634	19980	19980					0.08135210236650892
IFIVIALLYNM	11	Unmodified	_IFIVIALLYNM_					0	0	0			REV__tr|A0A7D7A6H6|A0A7D7A6H6_9CLOTZincmetalloproteaseOS=ClostridiumintestinaleOX=36845GN=rsePPE=3SV=1	REV__tr|A0A7D7A6H6|A0A7D7A6H6_9CLOTZincmetalloproteaseOS=ClostridiumintestinaleOX=36845GN=rsePPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	437.2570495605469	3	437.257799	1308.75157	-3.525	-0.0015413	2.5701	0.0011238	-0.95492	-0.00041755	437.25900137272055	155.13	2.0506	154.9	154.06	156.11	-0.22697					105	58	2	0	0	0	0.72466	1	15770	15770		20.03	5.3368	1	24211	+		17950	32658	14614	14635	19981	19981					0.10954107947213743
IFIVVFILI	9	Unmodified	_IFIVVFILI_					0	0	0		tr|A0A7D6ZZZ6|A0A7D6ZZZ6_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08095PE=4SV=1	tr|A0A7D6ZZZ6|A0A7D6ZZZ6_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08095PE=4SV=1	tr|A0A7D6ZZZ6|A0A7D6ZZZ6_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08095PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.862060546875	2	538.859547	1075.70454	2.6704	0.0014389	2.5078	0.0013513	5.1781	0.0027903	538.8612720845362	133.45	7.6689	131.93	131.41	139.08	-1.5257					434	157	6	0	0	0	0.61768	1	13391	13391		29.842	0	1	17348000			17951	35980	14615	14636	19982	19982					0.16971616458386052
IFIVVFILI	9	Unmodified	_IFIVVFILI_					0	0	0		tr|A0A7D6ZZZ6|A0A7D6ZZZ6_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08095PE=4SV=1	tr|A0A7D6ZZZ6|A0A7D6ZZZ6_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08095PE=4SV=1	tr|A0A7D6ZZZ6|A0A7D6ZZZ6_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08095PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.2659301757812	2	538.859547	1075.70454	2.9021	0.0015639	3.449	0.0018585	6.3511	0.0034224	538.8614412944032	132.09	3.3974	130.58	127.7	131.1	-1.5014					89	68	2	0	0	0	0.027462	1	12491	12491		21.702	0	1	23438			17952	35980	14615	14636	19983	19983					0.16971616458386052
IFIVVPFWL	9	Unmodified	_IFIVVPFWL_					0	0	0			REV__ENST00000560301.5_1_15:41067690-41071423:-|nuORF	REV__ENST00000560301.5_1_15:41067690-41071423:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	566.7969970703125	2	567.341521	1132.66849	0.1786	0.00010133	4.269	0.002422	4.4476	0.0025233	567.3438712299322	124.66	0.34528	124.42	124.22	124.57	-0.23193					9	6	2	0	0	0	0.027462	1	12124	12124		29.842	11.517	1	11077	+		17953	27615	14616	14637	19984	19984					0.10746159281507062
IFIVVPFWL	9	Unmodified	_IFIVVPFWL_					0	0	0			REV__ENST00000560301.5_1_15:41067690-41071423:-|nuORF	REV__ENST00000560301.5_1_15:41067690-41071423:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	567.341521	1132.66849	1.3673	0.0007757	3.5453	0.0020114	4.9125	0.0027871	567.3423554003525	125.64	0.51453	124.59	124.42	124.94	-1.0519	0.051217	-0.0018909	NaN	21.702	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11157	+		17954	27615	14616	14637							0.10746159281507062
IFIVVPFWL	9	Unmodified	_IFIVVPFWL_					0	0	0			REV__ENST00000560301.5_1_15:41067690-41071423:-|nuORF	REV__ENST00000560301.5_1_15:41067690-41071423:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	567.341521	1132.66849	-1.5802	-0.00089653	6.0237	0.0034175	4.4435	0.002521	567.3445860499953	126.02	0.4389	124.6	124.34	124.78	-1.4143	0.064772	0.00092134	NaN	21.702	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12718	+		17955	27615	14616	14637							0.10746159281507062
IFKAGGIIAAE	11	Unmodified	_IFKAGGIIAAE_					0	0	0			REV__tr|A0A553SPM4|A0A553SPM4_NIACIMannosyl-glycoproteinendo-beta-N-acetylglucosamidaseOS=NialliacirculansOX=1397GN=CEQ21_26660PE=4SV=1	REV__tr|A0A553SPM4|A0A553SPM4_NIACIMannosyl-glycoproteinendo-beta-N-acetylglucosamidaseOS=NialliacirculansOX=1397GN=CEQ21_26660PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3174438476562	2	545.318774	1088.623	-1.828	-0.00099686	1.1653	0.00063545	-0.66275	-0.00036141	545.3193247612335	62.213	1.8935	59.454	58.882	60.775	-2.7593					104	36	5	0	0	0	0.17933	1	4666	4666		82.75	4.4867	1	1098800	+		17956	30551	14617	14638	19985	19985					0.08222889028456848
IFKEEIIK	8	Unmodified	_IFKEEIIK_					0	0	0			REV__tr|A0A7D6VU07|A0A7D6VU07_9CLOTBMPfamilyABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05135PE=3SV=1	REV__tr|A0A7D6VU07|A0A7D6VU07_9CLOTBMPfamilyABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05135PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.8434753417969	2	510.310418	1018.60628	0.3128	0.00015962	-0.7345	-0.00037482	-0.4217	-0.0002152	510.3098724928367	124.69	1.0862	124.46	124.17	125.26	-0.23193					50	21	4	0	0	0	0.028476	1	12163	12163		23.042	1.0826	1	87939	+		17957	31644	14618	14639	19986	19986					0.09772388142528143
IFKKHLSV	8	Unmodified	_IFKKHLSV_					0	0	0			REV__ENSG00000162402|ENST00000294383|USP24	REV__ENSG00000162402|ENST00000294383|USP24	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.75994873046875	2	486.30547	970.596387	-0.59018	-0.00028701	-4.0395	-0.0019645	-4.6297	-0.0022515	486.3034746894758	61.395	0.54772	61.395	61.156	61.704	0					18	12	2	0	0	0	0.028476	1	5387	5387		45.952	13.997	1	301550	+		17958	20732	14619	14640	19987	19987					0.10991244927788557
IFKKLKKSS	9	Unmodified	_IFKKLKKSS_					0	0	0		tr|A0A7D6VR41|A0A7D6VR41_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05415PE=4SV=1	tr|A0A7D6VR41|A0A7D6VR41_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05415PE=4SV=1	tr|A0A7D6VR41|A0A7D6VR41_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05415PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	540.8322143554688	2	539.852784	1077.69102	-0.21561	-0.0001164	-0.68619	-0.00037044	-0.9018	-0.00048684	539.8524187601433	125.04	0.69114	124.8	124.47	125.16	-0.2359					22	13	2	0	0	0	0.027462	1	12145	12145		15.642	0.77694	1	34308			17959	34892	14620	14641	19988	19988					0.15527758679127146
IFKKRLKRS	9	Unmodified	_IFKKRLKRS_					0	0	0			REV__ENST00000487863.5_1_19:53056461-53056563:+|nuORF	REV__ENST00000487863.5_1_19:53056461-53056563:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.3096923828125	2	588.3904	1174.76625	-0.7804	-0.00045918	3.3468	0.0019692	2.5664	0.0015101	588.8945386831984	59.35	0.26589	59.35	59.228	59.494	0					12	6	3	0	0	0	0.027462	1	5116	5116		37.159	6.8414	1	241170	+		17960	26611	14621	14642	19989	19989					0.1858536093022849
IFKLVPMY	8	Unmodified	_IFKLVPMY_					0	0	0		tr|A0A553SSN7|A0A553SSN7_NIACINitrate/nitritetransporterOS=NialliacirculansOX=1397GN=CEQ21_03340PE=3SV=1	tr|A0A553SSN7|A0A553SSN7_NIACINitrate/nitritetransporterOS=NialliacirculansOX=1397GN=CEQ21_03340PE=3SV=1	tr|A0A553SSN7|A0A553SSN7_NIACINitrate/nitritetransporterOS=NialliacirculansOX=1397GN=CEQ21_03340PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.2602233886719	2	505.790807	1009.56706	-1.1199	-0.00056642	2.5421	0.0012858	1.4222	0.00071934	506.2924282828392	80.999	0.19617	78.289	78.199	78.396	-2.7106					5	3	2	0	0	0	0.028476	1	6631	6631		29.842	1.5873	1	8866.7			17961	34394	14622	14643	19990	19990					0.06265964587294093
IFKPKHSK	8	Unmodified	_IFKPKHSK_					0	0	0		tr|A0A553SML4|A0A553SML4_NIACIDEAD/DEAHboxhelicaseOS=NialliacirculansOX=1397GN=CEQ21_22790PE=4SV=1	tr|A0A553SML4|A0A553SML4_NIACIDEAD/DEAHboxhelicaseOS=NialliacirculansOX=1397GN=CEQ21_22790PE=4SV=1	tr|A0A553SML4|A0A553SML4_NIACIDEAD/DEAHboxhelicaseOS=NialliacirculansOX=1397GN=CEQ21_22790PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	492.80126953125	2	492.803094	983.591636	-0.22138	-0.00010909	-4.2522	-0.0020955	-4.4736	-0.0022046	492.80100049987163	46.915	1.4428	46.915	46.369	47.812	0					65	32	4	0	0	0	0.68704	1	3328	3328		45.972	7.1661	1	4754600			17962	33846	14623	14644	19991	19991					0.09918360785036384
IFKVREILK	9	Unmodified	_IFKVREILK_					0	0	0		tr|A0A7D6VM85|A0A7D6VM85_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12630PE=4SV=1	tr|A0A7D6VM85|A0A7D6VM85_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12630PE=4SV=1	tr|A0A7D6VM85|A0A7D6VM85_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12630PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	573.3753662109375	2	573.373884	1144.73321	1.2835	0.00073595	-0.10761	-6.1699E-05	1.1759	0.00067425	573.3736940622971	102.74	4.5051	102.74	102.17	106.67	0					254	104	3	0	0	0	0.27001	1	11507	11507		66.429	0.6261	1	5667200			17963	34649	14624	14645	19992	19992					0.16663734087501325
IFLAFDYIL	9	Unmodified	_IFLAFDYIL_					0	0	0			REV__tr|A0A7D7AB03|A0A7D7AB03_9CLOTLrgBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13380PE=4SV=1	REV__tr|A0A7D7AB03|A0A7D7AB03_9CLOTLrgBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13380PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	557.8109130859375	2	557.812793	1113.61103	-1.5435	-0.00086096	-2.1436	-0.0011957	-3.6871	-0.0020567	557.8114782865623	144.9	1.3416	144.68	144.34	145.68	-0.22696					84	26	5	0	0	0	0.50066	1	14639	14639		42.474	6.8562	1	532460	+		17964	32673	14625	14646	19993	19993					0.05877272285283652
IFLAKPLKR	9	Unmodified	_IFLAKPLKR_					0	0	0			REV__ENSG00000130035|ENST00000252318|GALNT8	REV__ENSG00000130035|ENST00000252318|GALNT8	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.3621215820312	2	543.363319	1084.71209	-0.74826	-0.00040658	-2.9209	-0.0015871	-3.6692	-0.0019937	543.3616145864607	20.908	1.2121	19.569	19.311	20.523	-1.3386					60	24	3	0	0	0	0.53957	1	134	134		38.806	10.725	1	288780	+		17965	18917	14626	14647	19994	19994					0.1731176877863163
IFLFLLDEQ	9	Unmodified	_IFLFLLDEQ_					0	0	0		ENSG00000049656|ENST00000320895|CLPTM1L;ENST00000503042.5_1_5:1325844-1330799:-|nuORF	ENSG00000049656|ENST00000320895|CLPTM1L	ENSG00000049656|ENST00000320895|CLPTM1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.2646484375	2	569.313158	1136.61176	0.27678	0.00015758	-3.4536	-0.0019662	-3.1768	-0.0018086	569.3104797077268	45.232	0.39095	45.232	45.023	45.413	0					16	8	3	0	0	0	0.027462	1	3125	3125		42.396	1.618	1	125650			17966	1172	14627	14648	19995	19995					0.04892066934326067
IFLFPLFITV	10	Unmodified	_IFLFPLFITV_					0	0	0		OR6B1|p.Y250Ifs*19|1|0.18|ENSG00000221813|chr7:144004743-144004743|C/-|frameshift_variant;ENSG00000221813|ENST00000641698|OR6B1	OR6B1|p.Y250Ifs*19|1|0.18|ENSG00000221813|chr7:144004743-144004743|C/-|frameshift_variant	OR6B1|p.Y250Ifs*19|1|0.18|ENSG00000221813|chr7:144004743-144004743|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	605.2907104492188	2	605.367736	1208.72092	1.4735	0.00089202	-2.1647	-0.0013104	-0.6912	-0.00041843	605.8680589560804	143.58	0.19902	143.58	143.46	143.66	0					5	3	2	0	0	0	0.027084	1	16772	16772		17.365	0	1	27031			17967	9226	14628	14649	19996	19996					0.12490697624457425
IFLFWNFL	8	Unmodified	_IFLFWNFL_					0	0	0			REV__tr|A0A553SL60|A0A553SL60_NIACICPBPfamilyintramembranemetalloproteaseOS=NialliacirculansOX=1397GN=CEQ21_19915PE=4SV=1	REV__tr|A0A553SL60|A0A553SL60_NIACICPBPfamilyintramembranemetalloproteaseOS=NialliacirculansOX=1397GN=CEQ21_19915PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	550.8046875	2	550.302396	1098.59024	0.61725	0.00033968	-2.0795	-0.0011444	-1.4622	-0.00080468	550.3010836773232	141.86	2.0274	141.86	141.49	143.51	0					101	40	5	0	0	0	0.68312	1	16534	16534		46.766	4.292	1	2049300	+		17968	30190	14629	14650	19997	19997					0.04488726696285994
IFLHEQVKP	9	Unmodified	_IFLHEQVKP_					0	0	0		tr|A0A553SS75|A0A553SS75_NIACIProtein-ADP-ribosehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_02545PE=4SV=1	tr|A0A553SS75|A0A553SS75_NIACIProtein-ADP-ribosehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_02545PE=4SV=1	tr|A0A553SS75|A0A553SS75_NIACIProtein-ADP-ribosehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_02545PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	555.8231201171875	2	555.818941	1109.62333	4.315	0.0023984	1.8397	0.0010225	6.1547	0.0034209	555.8198103416565	25.114	1.0176	22.405	22.261	23.279	-2.7097					54	22	4	0	0	0	0.5811	1	245	245		34.173	2.2177	1	302060			17969	34340	14630	14651	19998	19998					0.0729030874831551
IFLHTLPKL	9	Unmodified	_IFLHTLPKL_					0	0	0		ENSG00000169684|ENST00000299565|CHRNA5	ENSG00000169684|ENST00000299565|CHRNA5	ENSG00000169684|ENST00000299565|CHRNA5	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2540893554688	2	541.342052	1080.66955	1.6729	0.00090562	-2.9708	-0.0016082	-1.2978	-0.00070258	541.3404612385993	108.91	0.61142	108.91	108.67	109.28	0					31	13	3	0	0	0	0.027462	1	12331	12331		38.806	0	1	389240			17970	7031	14631	14652	19999	19999					0.13244373650422858
IFLIKGKFS	9	Unmodified	_IFLIKGKFS_					0	0	0			REV__ENSG00000185624|ENST00000331483|P4HB	REV__ENSG00000185624|ENST00000331483|P4HB	MULTI-MSMS	OvCa99_classI_Rep5	1	526.8306274414062	2	526.828778	1051.643	1.9245	0.0010139	-0.05516	-2.906E-05	1.8694	0.00098484	526.8285429057694	137.03	1.0943	137.03	136.73	137.82	0					55	22	4	0	0	0	0.22961	1	15972	15972		71.296	2.811	1	490570	+		17971	22515	14632	14653	20000	20000					0.11924684759082993
IFLKAKDKK	9	Unmodified	_IFLKAKDKK_					0	0	0		tr|A0A553SR80|A0A553SR80_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_00585PE=4SV=1	tr|A0A553SR80|A0A553SR80_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_00585PE=4SV=1	tr|A0A553SR80|A0A553SR80_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_00585PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.82958984375	2	545.852784	1089.69102	0.34602	0.00018888	-1.2819	-0.00069971	-0.93585	-0.00051084	545.8521746404971	97.57	0.30315	95.191	95.065	95.368	-2.3786					8	5	2	0	0	0	0.027462	1	8654	8654		54.776	3.4409	1	12705			17972	34234	14633	14654	20001	20001					0.14975758679133833
IFLLCPEHI	9	Unmodified	_IFLLCPEHI_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.C4432Lfs*27|1|0.15|ENSG00000055609|chr7:152148633-152148634|-/AGCCTGTAATCCCAGCTACTCGGGAGGCTGAG|frameshift_variant;KMT2C|p.S2184Lfs*11|1|0.1|ENSG00000055609|chr7:152181310-152181310|A/-|frameshift_variant;ENST00000496773.1_1_21:11039429-11058260:-|nuORF	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-MSMS	OvCa99_classI_Rep5	1	542.7979125976562	2	542.79662	1083.57869	1.3483	0.00073184	2.3641	0.0012832	3.7124	0.0020151	542.7977847144131	147.03	0.8853	147.03	146.62	147.5	0					52	17	4	0	0	0	0.50066	1	17173	17173		42.474	7.2737	1	813350			17973	1222	14634	14655	20002	20002					0.040241616106186484
IFLLCYYI	8	Unmodified	_IFLLCYYI_					0	0	0		BEST1|p.R47Ifs*14|1|0.04|ENSG00000167995|chr11:61951944-61951945|-/ATTATGGGAATGGGAATATGGTGGTGGA|frameshift_variant;ENST00000533521.5_1_11:61719272-61722837:+|nuORF;ENSG00000167995|ENST00000378043|BEST1	BEST1|p.R47Ifs*14|1|0.04|ENSG00000167995|chr11:61951944-61951945|-/ATTATGGGAATGGGAATATGGTGGTGGA|frameshift_variant	BEST1|p.R47Ifs*14|1|0.04|ENSG00000167995|chr11:61951944-61951945|-/ATTATGGGAATGGGAATATGGTGGTGGA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.3119506835938	2	524.282815	1046.55108	1.7014	0.00089204	0.38473	0.00020171	2.0862	0.0010937	524.2828213621233	76.624	0.47947	76.624	76.443	76.922	0					26	11	3	0	0	0	0.028476	1	7712	7712		33.493	0.68056	1	1742700			17974	147	14635	14656	20003	20003					0.029662583503977658
IFLLFFNL	8	Unmodified	_IFLLFFNL_					0	0	0			REV__tr|A0A7D6VR56|A0A7D6VR56_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23530PE=4SV=1	REV__tr|A0A7D6VR56|A0A7D6VR56_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23530PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.8031005859375	2	513.804771	1025.59499	-2.54	-0.001305	-2.3501	-0.0012075	-4.89	-0.0025125	513.803729508103	149.3	1.0479	147.86	147.43	148.48	-1.4344					31	21	2	0	0	0	0.74679	1	14721	14721		28.254	0	1	32407	+		17975	31388	14636	14657	20004	20004					0.08321610839016103
IFLLFFNL	8	Unmodified	_IFLLFFNL_					0	0	0			REV__tr|A0A7D6VR56|A0A7D6VR56_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23530PE=4SV=1	REV__tr|A0A7D6VR56|A0A7D6VR56_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23530PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	513.804771	1025.59499	-2.6682	-0.0013709	-1.3926	-0.00071554	-4.0608	-0.0020865	513.8038160662927	148.18	0.70175	147.96	147.77	148.47	-0.22697	0.079813	-0.00028797	NaN	28.254	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23468	+		17976	31388	14636	14657							0.08321610839016103
IFLLFFNL	8	Unmodified	_IFLLFFNL_					0	0	0			REV__tr|A0A7D6VR56|A0A7D6VR56_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23530PE=4SV=1	REV__tr|A0A7D6VR56|A0A7D6VR56_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23530PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	513.804771	1025.59499	-3.7999	-0.0019524	-0.46489	-0.00023886	-4.2648	-0.0021912	513.8044563371517	148.76	0.70178	147.81	147.6	148.3	-0.95119	-0.064547	0.00066538	NaN	28.254	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38111	+		17977	31388	14636	14657							0.08321610839016103
IFLLFFNL	8	Unmodified	_IFLLFFNL_					0	0	0			REV__tr|A0A7D6VR56|A0A7D6VR56_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23530PE=4SV=1	REV__tr|A0A7D6VR56|A0A7D6VR56_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23530PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	513.804771	1025.59499	-2.54	-0.001305	-2.3501	-0.0012075	-4.89	-0.0025125	513.803729508103	149.3	1.0479	147.86	147.43	148.48	-1.4344	-0.015266	-0.0012718	NaN	28.254	31	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32407	+		17978	31388	14636	14657							0.08321610839016103
IFLLTGVPGL	10	Unmodified	_IFLLTGVPGL_					0	0	0		ENSG00000197674|ENST00000641159|OR51C1P	ENSG00000197674|ENST00000641159|OR51C1P	ENSG00000197674|ENST00000641159|OR51C1P	MULTI-MSMS	OvCa99_classI_Rep5	1	515.8245849609375	2	515.320786	1028.62702	1.6752	0.00086326	2.483	0.0012795	4.1582	0.0021428	515.8239982265051	117.39	0.97881	117.39	117.09	118.06	0					46	20	4	0	0	0	0.52321	1	13436	13436		51.335	6.8044	1	313960			17979	8735	14637	14658	20005	20005					0.11384978522187339
IFLLTKTRS	9	Unmodified	_IFLLTKTRS_					0	0	0			REV__ENSG00000141446|ENST00000269214|ESCO1	REV__ENSG00000141446|ENST00000269214|ESCO1	MULTI-MSMS	OvCa99_classI_Rep5	1	539.833251953125	2	539.834591	1077.65463	1.0044	0.0005422	-3.0771	-0.0016611	-2.0727	-0.0011189	539.8329734873671	154.19	1.7914	154.19	153.69	155.48	0					99	35	4	0	0	0	0.44294	1	18113	18113		47.916	5.4411	1	1101400	+		17980	19738	14638	14659	20006	20006					0.11890881782414908
IFLLTLYGI	9	Unmodified	_IFLLTLYGI_					0	0	0		tr|A0A7D6ZFM1|A0A7D6ZFM1_9CLOTRodshape-determiningproteinRodAOS=ClostridiumintestinaleOX=36845GN=rodAPE=4SV=1	tr|A0A7D6ZFM1|A0A7D6ZFM1_9CLOTRodshape-determiningproteinRodAOS=ClostridiumintestinaleOX=36845GN=rodAPE=4SV=1	tr|A0A7D6ZFM1|A0A7D6ZFM1_9CLOTRodshape-determiningproteinRodAOS=ClostridiumintestinaleOX=36845GN=rodAPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.2860717773438	2	526.823161	1051.63177	-0.94819	-0.00049953	3.0374	0.0016002	2.0892	0.0011006	526.8264841732996	104.87	0.61227	102.75	102.53	103.15	-2.1192					14	11	2	0	0	0	0.027462	1	9492	9492		31.955	0	1	10270			17981	35515	14639	14660	20007	20007					0.10801862664948203
IFLLVVVSFLS	11	Unmodified	_IFLLVVVSFLS_					0	0	0		ENSG00000196187|ENST00000366835|TMEM63A;TMEM63A|p.T197Sfs*31|1|0.17|ENSG00000196187|chr1:225866660-225866661|-/GA|frameshift_variant	ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	MSMS	OvCa9_classI_Rep3	3	412.9251708984375	3	412.924925	1235.75295	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.016	1	54.889	54.389	55.389	-3.1264								0	0	0	0.19474	1	1772	1772		18.531	1.8137	1				17982	8575	14640	14661	20008	20008					0.14450065307619298
IFLNGHRRLI	10	Unmodified	_IFLNGHRRLI_					0	0	0			REV__ENST00000481749.5_1_3:138374233-138426144:-|nuORF	REV__ENST00000481749.5_1_3:138374233-138426144:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	619.8782958984375	2	619.877656	1237.74076	1.3118	0.00081313	0.062101	3.8495E-05	1.3739	0.00085162	619.8774863934541	118.89	0.80045	118.89	118.58	119.38	0					38	16	4	0	0	0	0.46756	1	13638	13638		58.782	0.55203	1	338440	+		17983	16688	14641	14662	20009	20009					0.1313988640779371
IFLPIKVEKHK	11	Unmodified	_IFLPIKVEKHK_					0	0	0			REV__tr|A0A7D6ZXR4|A0A7D6ZXR4_9CLOTDUF4829domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22860PE=4SV=1	REV__tr|A0A7D6ZXR4|A0A7D6ZXR4_9CLOTDUF4829domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22860PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.76104736328125	3	451.286857	1350.83874	0.35646	0.00016086	-2.8154	-0.0012706	-2.4589	-0.0011097	451.28592574222137	62.804	0.19301	59.346	59.21	59.403	-3.4577					6	3	2	0	0	0	0.02625	1	4371	4371		18.531	15.505	1	23478	+		17984	32342	14642	14663	20010	20010					0.17735650213103327
IFLPNIEKI	9	Unmodified	_IFLPNIEKI_					0	0	0		tr|A0A7D6VSU7|A0A7D6VSU7_9CLOTBifunctionaldiguanylatecyclase/phosphodiesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_05530PE=4SV=1	tr|A0A7D6VSU7|A0A7D6VSU7_9CLOTBifunctionaldiguanylatecyclase/phosphodiesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_05530PE=4SV=1	tr|A0A7D6VSU7|A0A7D6VSU7_9CLOTBifunctionaldiguanylatecyclase/phosphodiesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_05530PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.8306274414062	2	543.831517	1085.64848	-0.80718	-0.00043897	1.0692	0.00058145	0.26199	0.00014248	543.8317310088391	116.91	1.5717	115.54	115.14	116.71	-1.3645					66	29	4	0	0	0	0.16562	2	10932	10908;10932		82.241	10.085	1	242610			17985	35060	14643	14664	20011;20012	20012					0.10908363550902322
IFLPSRKP	8	Unmodified	_IFLPSRKP_					0	0	0			REV__nc|ENSG00000153094|O43521-12|BCL2L11	REV__nc|ENSG00000153094|O43521-12|BCL2L11	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.2990417480469	2	479.297645	956.580737	-0.86675	-0.00041543	0.40957	0.00019631	-0.45718	-0.00021912	479.29770731751853	99.869	1.3815	97.544	97.212	98.593	-2.3253					48	26	2	0	0	0	0.64026	1	8910	8910		55.504	5.4797	1	265210	+		17986	28935	14644	14665	20013	20013					0.10070958410756248
IFLPSRKP	8	Unmodified	_IFLPSRKP_					0	0	0			REV__nc|ENSG00000153094|O43521-12|BCL2L11	REV__nc|ENSG00000153094|O43521-12|BCL2L11	MULTI-MATCH	OvCa9_classI_Rep3	3		2	479.297645	956.580737	0.095992	4.6009E-05	-0.55902	-0.00026794	-0.46302	-0.00022193	479.2972174449648	99.387	0.92447	97.702	97.373	98.297	-1.685	0.07933	-0.00049219	NaN	55.504	33	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257870	+		17987	28935	14644	14665							0.10070958410756248
IFLPSRKP	8	Unmodified	_IFLPSRKP_					0	0	0			REV__nc|ENSG00000153094|O43521-12|BCL2L11	REV__nc|ENSG00000153094|O43521-12|BCL2L11	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	479.297645	956.580737	-0.86675	-0.00041543	0.40957	0.00019631	-0.45718	-0.00021912	479.29770731751853	99.869	1.3815	97.544	97.212	98.593	-2.3253	-0.07933	0.00043629	NaN	55.504	48	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265210	+		17988	28935	14644	14665							0.10070958410756248
IFLQITIN	8	Unmodified	_IFLQITIN_					0	0	0			REV__ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	REV__ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.28985595703125	2	481.289485	960.564418	-0.6756	-0.00032516	0.28739	0.00013832	-0.38821	-0.00018684	481.2894430163372	94.885	1.8627	92.416	92.11	93.972	-2.4685					87	36	4	0	0	0	0.36941	1	8324	8324		94.006	3.2298	1	864590	+		17989	15573	14645	14666	20014	20014					0.08255832453983203
IFLQLPRVL	9	Unmodified	_IFLQLPRVL_					0	0	0		ENST00000437681.1_1_1:28833842-28834094:+|nuORF	ENST00000437681.1_1_1:28833842-28834094:+|nuORF	ENST00000437681.1_1_1:28833842-28834094:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	549.8566284179688	2	549.855327	1097.6961	0.74238	0.0004082	1.0376	0.00057054	1.78	0.00097874	549.8557359958681	131.8	2.0198	131.8	131.15	133.17	0					93	42	4	0	0	0	0.46377	1	15339	15339		45.952	7.1458	1	1057500			17990	11889	14646	14667	20015	20015					0.15116062541756037
IFLRISGP	8	Unmodified	_IFLRISGP_					0	0	0			REV__ENSG00000064703|ENST00000369702|DDX20	REV__ENSG00000064703|ENST00000369702|DDX20	MULTI-SECPEP	OvCa99_classI_Rep5	1	452.7478942871094	2	451.776545	901.538538	-0.2678	-0.00012099	-3.9429	-0.0017813	-4.2108	-0.0019023	451.77461069600264	33.8	0.43407	33.8	33.583	34.017	0					14	8	2	0	0	0	0.028476	1	1600	1600		45.952	1.8352	1	107920	+		17991	16775	14647	14668	20016	20016					0.08382983002388755
IFLRLQFPC	9	Unmodified	_IFLRLQFPC_					0	0	0			REV__ENST00000424697.5_1_7:99668625-99668685:-|nuORF	REV__ENST00000424697.5_1_7:99668625-99668685:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.248291015625	2	568.817887	1135.62122	0.036706	2.0879E-05	-0.55421	-0.00031525	-0.51751	-0.00029437	568.8177874949383	30.763	0.34822	30.763	30.582	30.93	0					8	5	2	0	0	0	0.027462	1	1196	1196		31.955	0.42505	1	21325	+		17992	25648	14648	14669	20017	20017					0.058835567388996424
IFLSHLMGVL	10	Unmodified	_IFLSHLMGVL_					0	0	0		ENST00000512992.1_1_5:176562171-176562345:+|nuORF	ENST00000512992.1_1_5:176562171-176562345:+|nuORF	ENST00000512992.1_1_5:176562171-176562345:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.8888549804688	2	565.325545	1128.63654	2.0242	0.0011443	-3.0205	-0.0017076	-0.99633	-0.00056325	565.8252714936764	119.99	0.65681	119.99	119.62	120.27	0					31	14	4	0	0	0	0.026822	1	13789	13789		47.916	18.746	1	308310			17993	13001	14649	14670	20018	20018					0.0773642353606192
IFLTDTAKQI	10	Unmodified	_IFLTDTAKQI_					0	0	0		ENST00000557614.1_1_14:100803287-100808848:-|nuORF;nc|ENSG00000140105|P23381-2|WARS1;ENSG00000140105|ENST00000392882|WARS1	ENST00000557614.1_1_14:100803287-100808848:-|nuORF	ENST00000557614.1_1_14:100803287-100808848:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	575.3310546875	2	575.329339	1148.64412	0.66562	0.00038295	1.0772	0.00061975	1.7428	0.0010027	575.3297889107141	124.08	0.91272	124.08	123.79	124.7	0					36	19	2	0	0	0	0.37436	1	14307	14307		71.877	3.3928	1	821410			17994	4823	14650	14671	20019	20019					0.07574854337326542
IFLVRQKLL	9	Unmodified	_IFLVRQKLL_					0	0	0		tr|A0A553SRF1|A0A553SRF1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00960PE=4SV=1	tr|A0A553SRF1|A0A553SRF1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00960PE=4SV=1	tr|A0A553SRF1|A0A553SRF1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00960PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.3539428710938	2	565.376426	1128.7383	1.5531	0.00087806	3.2603	0.0018433	4.8133	0.0027213	565.8807099772358	144.33	0.29308	144.33	144.21	144.5	0					8	5	2	0	0	0	0.027462	1	16867	16867		25.45	1.2474	1	42807			17995	34257	14651	14672	20020	20020					0.17908037950132893
IFLVVLLTN	9	Unmodified	_IFLVVLLTN_					0	0	0			REV__SVEP1|p.S2985Tfs*35|1|0.18|ENSG00000165124|chr9:110406648-110406649|-/GAGAACCACAAGAAGTGTG|frameshift_variant	REV__SVEP1|p.S2985Tfs*35|1|0.18|ENSG00000165124|chr9:110406648-110406649|-/GAGAACCACAAGAAGTGTG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.793212890625	2	516.328611	1030.64267	-0.50895	-0.00026278	0.12609	6.5106E-05	-0.38285	-0.00019768	516.3287102745998	121.63	0.98161	120.28	119.9	120.88	-1.3479					28	18	2	0	0	0	0.027456	1	11511	11511		47.916	7.1374	1	28454	+		17996	29480	14652	14673	20021	20021					0.1285726503922433
IFLVYAACN	9	Unmodified	_IFLVYAACN_					0	0	0		nc|ENSG00000180264|Q7Z7M1|ADGRD2;ENSG00000180264|ENST00000696331|ADGRD2	nc|ENSG00000180264|Q7Z7M1|ADGRD2	nc|ENSG00000180264|Q7Z7M1|ADGRD2	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.3143615722656	2	507.259871	1012.50519	-0.99242	-0.00050342	3.4046	0.001727	2.4122	0.0012236	507.2615234612834	104.04	1.0403	103.46	103.08	104.12	-0.57639					32	20	2	0	0	0	0.027408	1	9637	9637		47.916	0	1	58678			17997	7867	14653	14674	20022	20022					-0.0005638683185225091
IFLWFSAGTN	10	Unmodified	_IFLWFSAGTN_					0	0	0			REV__ENST00000268719.8_1_17:17957531-17962251:+|nuORF	REV__ENST00000268719.8_1_17:17957531-17962251:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2890625	2	578.295299	1154.57605	-7.6021	-0.0043963	-2.1936	-0.0012685	-9.7957	-0.0056648	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.55359	2	14074	13627;14074		47.657	10.498	1	1429200	+		17998	24057	14654	14675	20023;20024	20024					0.004940294773405185
IFMAWFVT	8	Unmodified	_IFMAWFVT_					0	0	0		ENSG00000144136|ENST00000272542|SLC20A1	ENSG00000144136|ENST00000272542|SLC20A1	ENSG00000144136|ENST00000272542|SLC20A1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7590637207031	2	507.759507	1013.50446	-0.40156	-0.0002039	-2.6487	-0.0013449	-3.0503	-0.0015488	507.75804504112443	114.79	0.64168	114.67	114.26	114.9	-0.11777					35	12	3	0	0	0	0.68312	1	10939	10939		46.766	5.9883	1	84817			17999	5132	14655	14676	20025	20025					-0.0017518148089266106
IFMCAAFIV	9	Unmodified	_IFMCAAFIV_					0	0	0			REV__ENST00000463814.1_1_7:143815556-143816108:-|nuORF	REV__ENST00000463814.1_1_7:143815556-143816108:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	507.7644958496094	2	507.761192	1013.50783	1.731	0.00087896	4.2139	0.0021396	5.9449	0.0030186	507.7632378622318	90.683	0.43719	90.683	90.462	90.899	0					27	10	4	0	0	0	0.32242	1	9733	9733		60.404	3.6826	1	1800800	+		18000	26136	14656	14677	20026	20026					0.0016174530145462995
IFMCAAFIV	9	Unmodified	_IFMCAAFIV_					0	0	0			REV__ENST00000463814.1_1_7:143815556-143816108:-|nuORF	REV__ENST00000463814.1_1_7:143815556-143816108:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	507.761192	1013.50783	1.731	0.00087896	4.2139	0.0021396	5.9449	0.0030186	507.7632378622318	90.683	0.43719	90.683	90.462	90.899	0	0	0	NaN	60.404	27	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1800800	+		18001	26136	14656	14677							0.0016174530145462995
IFMQLRQL	8	Unmodified	_IFMQLRQL_					0	0	0			REV__ENST00000558157.5_1_15:63797018-63829253:+|nuORF	REV__ENST00000558157.5_1_15:63797018-63829253:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	524.8060913085938	2	524.802237	1047.58992	-1.0909	-0.00057252	4.3646	0.0022906	3.2737	0.001718	524.8041430606991	117.22	1.2891	117.09	116.96	118.25	-0.12869					58	25	3	0	0	0	0.57878	1	11236	11236		68.485	4.2774	1	262990	+		18002	27584	14657	14678	20027	20027					0.06802983704778853
IFMTCLEE	8	Carbamidomethyl (C)	_IFMTC(Carbamidomethyl (C))LEE_	IFMTC(1)LEE		IFMTC(52)LEE		0	1	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MULTI-MSMS	OvCa99_classI_Rep5	1	521.73193359375	2	521.732828	1041.4511	0.25688	0.00013402	-1.1072	-0.00057766	-0.85032	-0.00044364	521.7320250700318	152.26	0.51614	152.26	151.97	152.49	0					25	10	3	0	0	0	0.65582	1	17846	17846		52.299	16.681	1	154220	+		18003	17124	14658	14679	20028	20028	192				-0.0679634704572436
IFNAFRDNL	9	Unmodified	_IFNAFRDNL_					0	0	0			REV__ENSG00000135406|ENST00000257860|PRPH	REV__ENSG00000135406|ENST00000257860|PRPH	MULTI-SECPEP	OvCa9_classI_Rep2	2	555.3253784179688	2	555.290548	1108.56654	-0.44251	-0.00024572	-0.60753	-0.00033736	-1.05	-0.00058308	555.291079746275	84.361	0.56206	82.815	82.64	83.203	-1.5462					15	10	3	0	0	0	0.027462	1	7272	7272		44.117	0	1	34707	+		18004	19284	14659	14680	20029	20029					0.01660261191796053
IFNEFRKL	8	Unmodified	_IFNEFRKL_					0	0	0			REV__nc|ENSG00000100890|O15091-3|PRORP	REV__nc|ENSG00000100890|O15091-3|PRORP	MULTI-SECPEP	OvCa9_classI_Rep3	3	533.2830810546875	2	533.805834	1065.59712	-0.73865	-0.00039429	-1.0737	-0.00057316	-1.8124	-0.00096746	533.8051461049558	92.544	0.70988	90.583	90.468	91.178	-1.9617					25	14	2	0	0	0	0.028476	1	5940	5940		31.955	8.9124	1	52402	+		18005	17457	14660	14681	20030	20030					0.06694039576859723
IFNEKRDLV	9	Unmodified	_IFNEKRDLV_					0	0	0			REV__tr|A0A7D6VVK9|A0A7D6VVK9_9CLOTGlutathionebiosynthesisbifunctionalproteinGshABOS=ClostridiumintestinaleOX=36845GN=gshABPE=3SV=1	REV__tr|A0A7D6VVK9|A0A7D6VVK9_9CLOTGlutathionebiosynthesisbifunctionalproteinGshABOS=ClostridiumintestinaleOX=36845GN=gshABPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3212890625	2	567.319306	1132.62406	1.937	0.0010989	-1.933	-0.0010966	0.00398	2.2579E-06	567.3183195729122	86.015	1.9422	83.369	83.042	84.984	-2.6463					114	38	5	0	0	0	0.13482	1	7278	7278		87.754	2.8388	1	2305000	+		18006	31722	14661	14682	20031	20031					0.06305103397380662
IFNEVKNQL	9	Unmodified	_IFNEVKNQL_					0	0	0			REV__ENSG00000174238|ENST00000313486|PITPNA	REV__ENSG00000174238|ENST00000313486|PITPNA	MULTI-MSMS	OvCa99_classI_Rep5	1	552.8095703125	2	552.806031	1103.59751	1.111	0.00061419	3.9127	0.002163	5.0238	0.0027772	552.8084491791257	131.3	0.61343	131.3	131.01	131.62	0					30	12	3	0	0	0	0.51177	1	15238	15238		41.427	4.2675	1	318220	+		18007	21821	14662	14683	20032	20032					0.04985414506040797
IFNGDLVLS	9	Unmodified	_IFNGDLVLS_					0	0	0			REV__nc|ENSG00000123473|Q15468|STIL	REV__nc|ENSG00000123473|Q15468|STIL	MULTI-MSMS	OvCa99_classI_Rep5	1	489.2700500488281	2	489.26875	976.522947	1.655	0.00080973	0.78389	0.00038353	2.4389	0.0011933	489.269011234481	135.99	0.65695	135.99	135.69	136.35	0					21	13	2	0	0	0	0.18193	1	15864	15864		79.451	2.6044	1	173930	+		18008	18643	14663	14684	20033	20033					0.033746516946507654
IFNGSESFVR	10	Unmodified	_IFNGSESFVR_					0	0	0			REV__nc|ENSG00000123473|Q15468|STIL	REV__nc|ENSG00000123473|Q15468|STIL	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2881469726562	2	578.293288	1154.57202	-7.6021	-0.0043963	1.2846	0.00074285	-6.3176	-0.0036534	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.66721	1	13525	13525		34.173	3.8548	1	1429200	+		18009	18643	14664	14685	20034	20034					0.0009193998362206912
IFNISEPII	9	Unmodified	_IFNISEPII_					0	0	0		tr|A0A7D6VR17|A0A7D6VR17_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=celBPE=4SV=1	tr|A0A7D6VR17|A0A7D6VR17_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=celBPE=4SV=1	tr|A0A7D6VR17|A0A7D6VR17_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=celBPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	523.300537109375	2	523.30005	1044.58555	0.81272	0.0004253	0.58645	0.00030689	1.3992	0.00073218	523.3003099288478	144.98	0.83527	144.98	144.74	145.58	0					29	17	3	0	0	0	0.3076	1	16948	16948		62.107	5.3864	1	136080			18010	34884	14665	14686	20035	20035					0.06503797762843533
IFNLSKFLI	9	Unmodified	_IFNLSKFLI_					0	0	0			REV__nc|ENSG00000198758|Q8TE67-2|EPS8L3	REV__nc|ENSG00000198758|Q8TE67-2|EPS8L3	MULTI-SECPEP	OvCa9_classI_Rep2	2	547.7967529296875	2	547.83406	1093.65357	0.041649	2.2817E-05	-4.3727	-0.0023955	-4.3311	-0.0023727	547.8314177236524	106.64	0.39708	106.33	106.13	106.52	-0.30836					12	7	2	0	0	0	0.027425	1	9912	9912		60.118	0	1	15995	+		18011	29090	14666	14687	20036	20036					0.11048667413524527
IFNMSIVRKL	10	Unmodified	_IFNMSIVRKL_					0	0	0			REV__nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B	REV__nc|ENSG00000284209|A0A8V8TMC4|CCNYL1B	MULTI-MSMS	OvCa9_classI_Rep4_	4	407.5798645019531	3	407.577643	1219.7111	1.0344	0.00042159	1.6286	0.00066378	2.663	0.0010854	407.5782791583038	58.499	2.3811	55.107	54.752	57.133	-3.392					132	47	5	0	0	0	0.60504	1	3884	3884		41.427	0	1	1731900	+		18012	29198	14667	14688	20037	20037					0.11003186347420524
IFNNKVMEKA	10	Unmodified	_IFNNKVMEKA_					0	0	0		tr|A0A553SUH1|A0A553SUH1_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_06965PE=4SV=1	tr|A0A553SUH1|A0A553SUH1_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_06965PE=4SV=1	tr|A0A553SUH1|A0A553SUH1_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_06965PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.3186645507812	2	597.320991	1192.62743	0.092565	5.5291E-05	-2.8011	-0.0016731	-2.7085	-0.0016178	597.319080326334	121.42	0.92976	120.07	119.79	120.72	-1.3479					42	17	3	0	0	0	0.59703	1	11441	11441		42.396	0	1	77810			18013	34609	14668	14689	20038	20038					0.03882030179738649
IFNNTDVLI	9	Unmodified	_IFNNTDVLI_					0	0	0		tr|A0A553SIN6|A0A553SIN6_NIACISugarisomeraseOS=NialliacirculansOX=1397GN=CEQ21_15185PE=4SV=1	tr|A0A553SIN6|A0A553SIN6_NIACISugarisomeraseOS=NialliacirculansOX=1397GN=CEQ21_15185PE=4SV=1	tr|A0A553SIN6|A0A553SIN6_NIACISugarisomeraseOS=NialliacirculansOX=1397GN=CEQ21_15185PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.3141479492188	2	524.787307	1047.56006	-1.4876	-0.00078068	-2.2756	-0.0011942	-3.7632	-0.0019749	525.2861784362382	124.52	0.8738	123.13	122.67	123.54	-1.3908					28	16	3	0	0	0	0.027462	1	11787	11787		47.657	9.8458	1	40539			18014	33403	14669	14690	20039	20039					0.038183232404207956
IFNPLTLVI	9	Unmodified	_IFNPLTLVI_					0	0	0			REV__ENSG00000187474|ENST00000339223|FPR3	REV__ENSG00000187474|ENST00000339223|FPR3	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.793212890625	2	515.320786	1028.62702	-0.76908	-0.00039632	-0.081186	-4.1837E-05	-0.85027	-0.00043816	515.3200411011386	120.93	1.0363	120.73	120.41	121.44	-0.19718					30	20	2	0	0	0	0.027462	1	11688	11688		34.173	3.6689	1	19107	+		18015	22640	14670	14691	20040	20040					0.11384978522164602
IFNPVSKNF	9	Unmodified	_IFNPVSKNF_					0	0	0		ENST00000589391.5_1_2:179401165-179403504:+|nuORF;ENST00000415561.1_1_2:179402212-179403504:+|nuORF;ENST00000588244.5_1_2:179402120-179403504:+|nuORF;ENST00000419746.5_1_2:179402219-179403504:+|nuORF;ENST00000589434.5_1_2:179388144-179403504:+|nuORF	ENST00000589391.5_1_2:179401165-179403504:+|nuORF	ENST00000589391.5_1_2:179401165-179403504:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	533.2911376953125	2	533.290017	1064.56548	2.3921	0.0012757	-0.59424	-0.0003169	1.7978	0.00095876	533.2896582036833	91.534	0.75988	91.534	91.332	92.092	0					45	17	3	0	0	0	0.033166	2	9857	9857;9887		132.76	26.343	1	7125100			18016	11590	14671	14692	20041;20042	20041					0.03578046822894976
IFNTHAGLDPA	11	Unmodified	_IFNTHAGLDPA_					0	0	0		ENST00000490689.3_1_3:157821828-157821915:-|nuORF	ENST00000490689.3_1_3:157821828-157821915:-|nuORF	ENST00000490689.3_1_3:157821828-157821915:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	578.2891845703125	2	578.293288	1154.57202	-5.4888	-0.0031741	-0.73844	-0.00042704	-6.2272	-0.0036012	578.2927598597663	159.22	4.1126	158.99	158.53	162.64	-0.22697					262	82	5	0	0	0	0.18313	2	16214	16214;16298		82.241	12.613	1	1073400			18017	12700	14672	14693	20043;20044	20043					0.0009193998362206912
IFNTHAGLDPA	11	Unmodified	_IFNTHAGLDPA_					0	0	0		ENST00000490689.3_1_3:157821828-157821915:-|nuORF	ENST00000490689.3_1_3:157821828-157821915:-|nuORF	ENST00000490689.3_1_3:157821828-157821915:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	578.288818359375	2	578.293288	1154.57202	-7.6021	-0.0043963	1.2846	0.00074285	-6.3176	-0.0036534	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.65947	3	14115	14091;14115;14176		39.253	0.65241	1	1429200			18018	12700	14672	14693	20045;20046;20047	20046					0.0009193998362206912
IFNTHAGLDPA	11	Unmodified	_IFNTHAGLDPA_					0	0	0		ENST00000490689.3_1_3:157821828-157821915:-|nuORF	ENST00000490689.3_1_3:157821828-157821915:-|nuORF	ENST00000490689.3_1_3:157821828-157821915:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2897338867188	2	578.293288	1154.57202	-7.6654	-0.0044328	1.6458	0.00095178	-6.0195	-0.0034811	578.2940529397285	163.97	0.95636	162.57	161.7	162.66	-1.3925					62	21	3	0	0	0	0.67529	1	14279	14279		37.812	0	1	144290			18019	12700	14672	14693	20048	20048					0.0009193998362206912
IFPENNVEF	9	Unmodified	_IFPENNVEF_					0	0	0		ENST00000462994.1_1_10:103547260-103547323:-|nuORF	ENST00000462994.1_1_10:103547260-103547323:-|nuORF	ENST00000462994.1_1_10:103547260-103547323:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.7699584960938	2	554.769114	1107.52368	-1.6724	-0.00092782	0.80683	0.0004476	-0.86561	-0.00048021	554.7693859079982	107.67	1.7342	105.79	105.54	107.27	-1.8785					75	34	3	0	0	0	0.53957	1	9851	9851		38.806	1.647	1	160690			18020	12216	14673	14694	20049	20049					-0.025785536562807465
IFPGINYSFE	10	Unmodified	_IFPGINYSFE_					0	0	0			REV__tr|A0A553SNC8|A0A553SNC8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24215PE=4SV=1	REV__tr|A0A553SNC8|A0A553SNC8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24215PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.8152465820312	2	593.792589	1185.57063	1.1518	0.00068392	-2.6194	-0.0015554	-1.4676	-0.00087145	593.7910252173947	150.68	0.95119	150.68	150.24	151.2	0					24	18	2	0	0	0	0.026606	1	17680	17680		71.877	10.906	1	17756	+		18021	30410	14674	14695	20050	20050					-0.0147369410515239
IFPIFILTGF	10	Unmodified	_IFPIFILTGF_					0	0	0			REV__tr|A0A7D6VMY7|A0A7D6VMY7_9CLOTNa/PicotransporterfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16730PE=4SV=1	REV__tr|A0A7D6VMY7|A0A7D6VMY7_9CLOTNa/PicotransporterfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16730PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	584.2892456054688	2	584.344261	1166.67397	-0.46313	-0.00027063	3.9393	0.0023019	3.4761	0.0020313	584.3446032862746	112.46	0.76686	110.95	110.53	111.29	-1.5111					25	14	3	0	0	0	0.027084	1	10428	10428		24.203	6.8378	1	20188	+		18022	31152	14675	14696	20051	20051					0.09729838073326391
IFPIFILTGF	10	Unmodified	_IFPIFILTGF_					0	0	0			REV__tr|A0A7D6VMY7|A0A7D6VMY7_9CLOTNa/PicotransporterfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16730PE=4SV=1	REV__tr|A0A7D6VMY7|A0A7D6VMY7_9CLOTNa/PicotransporterfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16730PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	584.344261	1166.67397	0.076092	4.4464E-05	3.1259	0.0018266	3.202	0.001871	584.3449838040148	111.09	0.54265	110.95	110.68	111.23	-0.13961	0.028664	4.4211E-05	NaN	31.955	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17408	+		18023	31152	14675	14696							0.09729838073326391
IFPIFILTGF	10	Unmodified	_IFPIFILTGF_					0	0	0			REV__tr|A0A7D6VMY7|A0A7D6VMY7_9CLOTNa/PicotransporterfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16730PE=4SV=1	REV__tr|A0A7D6VMY7|A0A7D6VMY7_9CLOTNa/PicotransporterfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16730PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	584.344261	1166.67397	0.44653	0.00026092	2.4757	0.0014467	2.9222	0.0017076	584.3444061706842	111.98	0.93842	110.88	110.3	111.24	-1.1038	-0.049048	-0.00071561	NaN	31.955	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14759	+		18024	31152	14675	14696							0.09729838073326391
IFPIKLLLA	9	Unmodified	_IFPIKLLLA_					0	0	0			REV__tr|A0A7D6ZVD9|A0A7D6ZVD9_9CLOTPhospho-N-acetylmuramoyl-pentapeptide-transferaseOS=ClostridiumintestinaleOX=36845GN=mraYPE=3SV=1	REV__tr|A0A7D6ZVD9|A0A7D6ZVD9_9CLOTPhospho-N-acetylmuramoyl-pentapeptide-transferaseOS=ClostridiumintestinaleOX=36845GN=mraYPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	514.3499755859375	2	514.349346	1026.68414	0.78195	0.0004022	1.1689	0.00060125	1.9509	0.0010034	514.3497858306995	142.25	1.3317	142.25	141.93	143.27	0					53	26	3	0	0	0	0.42057	1	16605	16605		50.025	5.4935	1	223410	+		18025	32248	14676	14697	20052	20052					0.17186445798574823
IFPIKLLLA	9	Unmodified	_IFPIKLLLA_					0	0	0			REV__tr|A0A7D6ZVD9|A0A7D6ZVD9_9CLOTPhospho-N-acetylmuramoyl-pentapeptide-transferaseOS=ClostridiumintestinaleOX=36845GN=mraYPE=3SV=1	REV__tr|A0A7D6ZVD9|A0A7D6ZVD9_9CLOTPhospho-N-acetylmuramoyl-pentapeptide-transferaseOS=ClostridiumintestinaleOX=36845GN=mraYPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.7680053710938	2	514.349346	1026.68414	0.78195	0.0004022	1.1689	0.00060125	1.9509	0.0010034	514.3497858306995	142.25	1.3317	142.25	141.93	143.27	0					53	26	3	0	0	0	0.027462	1	16668	16668		19.36	0	1	223410	+		18026	32248	14676	14697	20053	20053					0.17186445798574823
IFPLSIPGVM	10	Unmodified	_IFPLSIPGVM_					0	0	0		tr|A0A7D6ZEX0|A0A7D6ZEX0_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15480PE=3SV=1	tr|A0A7D6ZEX0|A0A7D6ZEX0_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15480PE=3SV=1	tr|A0A7D6ZEX0|A0A7D6ZEX0_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15480PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.3037109375	2	537.306821	1072.59909	-0.44806	-0.00024074	-3.7241	-0.002001	-4.1721	-0.0022417	537.3046835582898	113.03	1.2687	111.59	111.21	112.48	-1.4461					56	25	3	0	0	0	0.46756	1	10458	10458		58.782	0.55203	1	134720			18027	35492	14677	14698	20054	20054					0.06569332270441919
IFPQMQPKI	9	Unmodified	_IFPQMQPKI_					0	0	0			REV__ENST00000503120.5_1_5:138725194-138725560:-|nuORF	REV__ENST00000503120.5_1_5:138725194-138725560:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.8276977539062	2	551.309895	1100.60524	-0.3274	-0.0001805	0.0035797	1.9735E-06	-0.32382	-0.00017852	551.3091061826509	61.112	0.51484	61.112	60.859	61.374	0					26	11	3	0	0	0	0.027462	1	5353	5353		37.159	8.0096	1	994820	+		18028	26839	14678	14699	20055	20055					0.05895850501951827
IFPSAGTGHGS	11	Unmodified	_IFPSAGTGHGS_					0	0	0		ENST00000564218.5_1_16:31448362-31454203:-|nuORF	ENST00000564218.5_1_16:31448362-31454203:-|nuORF	ENST00000564218.5_1_16:31448362-31454203:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	515.7503662109375	2	515.751256	1029.48796	0.44781	0.00023096	0.40924	0.00021107	0.85705	0.00044203	515.7513503783326	132.24	1.5304	131.12	130.79	132.32	-1.1249					72	30	3	0	0	0	0.58572	1	10552	10552		45.972	6.7194	1	308860			18029	13802	14679	14700	20056	20056					-0.02560591113274313
IFPSTYCF	8	Unmodified	_IFPSTYCF_					0	0	0		L1P2_dup1497|chr19:20226195-20227139:-|1.0833442391613386|0.1594826865315493|2.76|428.0|55|3|anti-sense	L1P2_dup1497|chr19:20226195-20227139:-|1.0833442391613386|0.1594826865315493|2.76|428.0|55|3|anti-sense	L1P2_dup1497|chr19:20226195-20227139:-|1.0833442391613386|0.1594826865315493|2.76|428.0|55|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.2644348144531	2	489.225497	976.43644	1.9839	0.00097056	-1.5032	-0.00073543	0.48063	0.00023514	489.22467207148634	83.973	0.33432	83.973	83.801	84.135	0					11	7	2	0	0	0	0.028476	1	8732	8732		86.935	15.639	1	108700			18030	14640	14680	14701	20057	20057					-0.052720511315555996
IFQFRRRLATD	11	Unmodified	_IFQFRRRLATD_					0	0	0			REV__tr|A0A553SUN5|A0A553SUN5_NIACIAAAfamilyATPaseOS=NialliacirculansOX=1397GN=CEQ21_03725PE=4SV=1	REV__tr|A0A553SUN5|A0A553SUN5_NIACIAAAfamilyATPaseOS=NialliacirculansOX=1397GN=CEQ21_03725PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.75799560546875	3	474.936999	1421.78917	-0.34138	-0.00016213	2.0018	0.00095073	1.6604	0.0007886	474.9383153288236	55.397	0.2874	55.397	55.233	55.52	0					9	6	2	0	0	0	0.026174	1	4519	4519		17.167	4.2093	1	203750	+		18031	31101	14681	14702	20058	20058					0.09514335257017592
IFQLSGGLDL	10	Unmodified	_IFQLSGGLDL_					0	0	0			REV__CCDC141|p.K1308Efs*10|1|0.17|ENSG00000163492|chr2:178837296-178837297|TT/-|frameshift_variant	REV__CCDC141|p.K1308Efs*10|1|0.17|ENSG00000163492|chr2:178837296-178837297|TT/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	531.7977294921875	2	531.795132	1061.57571	1.3673	0.00072711	0.42975	0.00022854	1.797	0.00095565	531.7954691160586	146.81	0.78806	146.81	146.57	147.36	0					27	15	2	0	0	0	0.19075	1	17167	17167		95.815	5.4453	1	89353	+		18032	15748	14682	14703	20059	20059					0.04738609757487211
IFQSHKKVI	9	Unmodified	_IFQSHKKVI_					0	0	0			REV__ENST00000554401.1_1_14:102549349-102551760:-|nuORF	REV__ENST00000554401.1_1_14:102549349-102551760:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	550.3347778320312	2	550.334759	1098.65496	1.5539	0.00085517	0.92348	0.00050822	2.4774	0.0013634	550.3352630562464	134.87	0.94147	134.87	134.61	135.55	0					30	20	2	0	0	0	0.62352	1	15747	15747		29.15	0	1	151240	+		18033	17059	14683	14704	20060	20060					0.10958301502273571
IFREALPSL	9	Unmodified	_IFREALPSL_					0	0	0			REV__tr|A0A7D6VSR5|A0A7D6VSR5_9CLOTLysRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07950PE=3SV=1	REV__tr|A0A7D6VSR5|A0A7D6VSR5_9CLOTLysRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07950PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	523.30615234375	2	523.305667	1044.59678	-0.23759	-0.00012433	-0.31404	-0.00016434	-0.55163	-0.00028867	523.3053728834569	108.59	1.7075	107.39	107.11	108.82	-1.1978					93	32	5	0	0	0	0.14998	1	7775	7775		84.916	15.288	1	782850	+		18034	31531	14684	14705	20061	20061					0.0762661985700106
IFRHNVLLAQ	10	Unmodified	_IFRHNVLLAQ_					0	0	0			REV__ENST00000540664.5_1_10:98721011-98721128:+|nuORF	REV__ENST00000540664.5_1_10:98721011-98721128:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	605.855712890625	2	605.85639	1209.69823	1.4544	0.00088118	-2.7004	-0.001636	-1.246	-0.00075487	605.8546440314993	133.02	1.7212	131.9	131.58	133.3	-1.1249					92	34	4	0	0	0	0.59703	1	10704	10704		42.396	13.226	1	499230	+		18035	27357	14685	14706	20062	20062					0.10176491279571565
IFRIKLGN	8	Unmodified	_IFRIKLGN_					0	0	0		ENSG00000255561|ENST00000260257|FDXACB1;nc|ENSG00000255561|Q9BRP7-2|FDXACB1	ENSG00000255561|ENST00000260257|FDXACB1	ENSG00000255561|ENST00000260257|FDXACB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.8010559082031	2	480.803094	959.591636	-3.2353	-0.0015556	-1.1249	-0.00054087	-4.3603	-0.0020964	480.80242897085384	151.49	1.9682	150.06	149.63	151.6	-1.4344					128	43	5	0	0	0	0.75915	1	15061	15061		20.482	1.1219	1	1260100			18036	9458	14686	14707	20063	20063					0.1102236078503438
IFRLLPHFI	9	Unmodified	_IFRLLPHFI_					0	0	0			REV__ENSG00000131558|ENST00000253861|EXOC4	REV__ENSG00000131558|ENST00000253861|EXOC4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	578.8463134765625	2	578.355494	1154.69644	-1.3547	-0.00078348	-3.5876	-0.0020749	-4.9423	-0.0028584	578.3532172852783	81.593	1.1633	78.883	78.641	79.804	-2.7106					41	23	4	0	0	0	0.027462	1	6767	6767		52.299	18.378	1	257230	+		18037	19022	14687	14708	20064	20064					0.12527482261612022
IFRLPFAKI	9	Unmodified	_IFRLPFAKI_					0	0	0			REV__tr|A0A7D6VT33|A0A7D6VT33_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07555PE=4SV=1	REV__tr|A0A7D6VT33|A0A7D6VT33_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07555PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	552.8486938476562	2	552.850045	1103.68554	1.8528	0.0010243	-3.7597	-0.0020786	-1.907	-0.0010543	552.8478699431734	110.26	1.5646	110.26	109.86	111.42	0					79	34	4	0	0	0	0.38529	1	12520	12520		53.351	2.016	1	4864100	+		18038	31568	14688	14709	20065	20065					0.13784079887318512
IFRLRSSLL	9	Unmodified	_IFRLRSSLL_					0	0	0		sp|Q6SW05|UL150_HCMVMUncharacterizedproteinUL150OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL150PE=3SV=1	sp|Q6SW05|UL150_HCMVMUncharacterizedproteinUL150OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL150PE=3SV=1	sp|Q6SW05|UL150_HCMVMUncharacterizedproteinUL150OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL150PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	552.8496704101562	2	552.848033	1103.68151	1.8528	0.0010243	-0.12154	-6.7195E-05	1.7312	0.0009571	552.8478699431734	110.26	1.5646	110.26	109.86	111.42	0					79	34	4	0	0	0	0.24951	1	12497	12497		68.787	2.3575	1	4864100			18039	32909	14689	14710	20066	20066					0.13381990393600063
IFRPGGTNPA	10	Unmodified	_IFRPGGTNPA_					0	0	0			REV__L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|23|1|sense	REV__L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|23|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.3143920898438	2	515.277441	1028.54033	1.8424	0.00094936	1.4223	0.00073286	3.2647	0.0016822	515.2798754394655	77.431	0.46126	77.431	77.211	77.672	0					15	10	2	0	0	0	0.02676	1	7807	7807		41.427	18.384	1	192810	+		18040	28518	14690	14711	20067	20067					0.027199920203202055
IFRRLTPE	8	Unmodified	_IFRRLTPE_					0	0	0			REV__tr|A0A553SQD5|A0A553SQD5_NIACIDsbAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07525PE=4SV=1	REV__tr|A0A553SQD5|A0A553SQD5_NIACIDsbAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07525PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.3021850585938	2	516.303458	1030.59236	1.2857	0.00066382	-1.5052	-0.00077714	-0.2195	-0.00011333	516.3026177968491	112.22	0.77969	112.22	111.83	112.61	0					32	16	3	0	0	0	0.35163	1	12769	12769		97.473	7.1029	1	703970	+		18041	30625	14691	14712	20068	20068					0.07829155434069435
IFRRRWPRRFR	11	Unmodified	_IFRRRWPRRFR_					0	0	0		ENST00000575234.1_1_16:3355499-3356027:+|nuORF	ENST00000575234.1_1_16:3355499-3356027:+|nuORF	ENST00000575234.1_1_16:3355499-3356027:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	549.3302612304688	3	549.330676	1644.9702	-1.1114	-0.00061055	-0.96733	-0.00053139	-2.0788	-0.0011419	549.3302645089042	27.266	0.59849	27.266	27.043	27.641	0					40	11	5	0	0	0	0.72573	1	808	808		6.001	4.5823	1	594300			18042	13937	14692	14713	20069	20069					0.17351318144210381
IFRRRWPRRFR	11	Unmodified	_IFRRRWPRRFR_					0	0	0		ENST00000575234.1_1_16:3355499-3356027:+|nuORF	ENST00000575234.1_1_16:3355499-3356027:+|nuORF	ENST00000575234.1_1_16:3355499-3356027:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	413.2215881347656	4	412.249826	1644.9702	-0.0049606	-2.045E-06	-2.0226	-0.0008338	-2.0275	-0.00083585	412.248938273949	27.246	0.6482	27.246	27.043	27.691	0					41	12	5	0	0	0	0.026562	1	816	816		0	0	1	407150			18043	13937	14692	14713	20070	20070					0.17351318144210381
IFRSIIVPL	9	Unmodified	_IFRSIIVPL_					0	0	0		tr|A0A553SMI3|A0A553SMI3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_22595PE=4SV=1	tr|A0A553SMI3|A0A553SMI3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_22595PE=4SV=1	tr|A0A553SMI3|A0A553SMI3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_22595PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.3432006835938	2	529.342052	1056.66955	1.1785	0.00062383	0.95327	0.00050461	2.1318	0.0011284	529.3423650284788	146.15	0.841	146.15	145.83	146.67	0					45	16	4	0	0	0	0.46377	1	17102	17102		45.952	0	1	405950			18044	33837	14693	14714	20071	20071					0.14348373650409485
IFRVYGDP	8	Unmodified	_IFRVYGDP_					0	0	0			REV__ENSG00000124827|ENST00000379491|GCM2	REV__ENSG00000124827|ENST00000379491|GCM2	MULTI-MSMS	OvCa9_classI_Rep4_	4	483.7579040527344	2	483.75581	965.497067	3.3614	0.0016261	0.98295	0.00047551	4.3444	0.0021016	483.7561891827334	133.64	1.3276	132.12	131.71	133.03	-1.5257					68	26	4	0	0	0	0.59148	1	12889	12889		65.803	2.4969	1	265510	+		18045	18708	14694	14715	20072	20072					0.012938022430375895
IFRYKEPL	8	Unmodified	_IFRYKEPL_					0	0	0		tr|A0A553SSB5|A0A553SSB5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02805PE=4SV=1	tr|A0A553SSB5|A0A553SSB5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02805PE=4SV=1	tr|A0A553SSB5|A0A553SSB5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02805PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	533.3110961914062	2	533.30821	1064.60187	1.2228	0.00065211	4.2204	0.0022508	5.4432	0.0029029	533.3102475557516	145.84	0.74811	145.84	145.53	146.28	0					29	14	3	0	0	0	0.7224	1	17045	17045		38.806	1.647	1	137540			18046	34354	14695	14716	20073	20073					0.07214923719607214
IFSIEIHQI	9	Unmodified	_IFSIEIHQI_					0	0	0			REV__tr|A0A553STX4|A0A553STX4_NIACIABCtransporterpermease/substrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_05855PE=3SV=1	REV__tr|A0A553STX4|A0A553STX4_NIACIABCtransporterpermease/substrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_05855PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	550.2803344726562	2	550.310949	1098.60735	-0.44716	-0.00024608	-0.64357	-0.00035416	-1.0907	-0.00060024	550.3106522416252	121.11	0.83873	120.92	120.46	121.3	-0.19719					32	16	3	0	0	0	0.027453	1	11683	11683		54.776	0	1	25192	+		18047	31020	14696	14717	20074	20074					0.06198602511426543
IFSIKPLQF	9	Unmodified	_IFSIKPLQF_					0	0	0		ENSG00000151233|ENST00000398675|GXYLT1;nc|ENSG00000151233|Q4G148-2|GXYLT1;GXYLT1|p.T239Hfs*15|1|0.3|ENSG00000151233|chr12:42105967-42105967|T/-|frameshift_variant	ENSG00000151233|ENST00000398675|GXYLT1	ENSG00000151233|ENST00000398675|GXYLT1	MULTI-MSMS	OvCa99_classI_Rep5	1	546.8274536132812	2	546.826235	1091.63792	1.4777	0.00080806	1.0212	0.00055842	2.4989	0.0013665	546.8265946468334	127.12	0.94145	127.12	126.87	127.81	0					33	20	3	0	0	0	0.0078217	1	14706	14706		180.93	55.112	1	817270			18048	5543	14697	14718	20075	20075					0.0957638089644206
IFSKFGKITN	10	Unmodified	_IFSKFGKITN_					0	0	0		EIF3B|p.D220Y|1|0.2|ENSG00000106263|chr7:2360868-2360868|G/T|missense_variant;ENSG00000106263|ENST00000360876|EIF3B;nc|ENSG00000106263|P55884-2|EIF3B	EIF3B|p.D220Y|1|0.2|ENSG00000106263|chr7:2360868-2360868|G/T|missense_variant	EIF3B|p.D220Y|1|0.2|ENSG00000106263|chr7:2360868-2360868|G/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	577.8321533203125	2	577.832049	1153.64954	-1.4654	-0.00084674	-2.2644	-0.0013084	-3.7298	-0.0021552	577.8305745007855	55.328	1.6243	52.034	51.597	53.221	-3.2944					92	31	4	0	0	0	0.45822	1	3489	3489		60.118	3.486	1	919840			18049	791	14698	14719	20076	20076					0.07886577919794036
IFSKIVSLF	9	Unmodified	_IFSKIVSLF_					0	0	0		ENSG00000130741|ENST00000253039|EIF2S3;ENSG00000180574|ENST00000538173|EIF2S3B;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B	ENSG00000130741|ENST00000253039|EIF2S3	ENSG00000130741|ENST00000253039|EIF2S3	MULTI-MSMS	OvCa99_classI_Rep5	1	527.3217163085938	2	527.320786	1052.62702	0.63164	0.00033308	1.2659	0.00066753	1.8975	0.0010006	527.3213479087833	132.08	1.2707	132.08	131.62	132.89	0					52	26	3	0	0	0	0.053172	1	15334	15334		116.9	8.8161	1	433590			18050	4008	14699	14720	20077	20077					0.10280978522177975
IFSLKVKEQ	9	Unmodified	_IFSLKVKEQ_					0	0	0		tr|A0A7D6ZST7|A0A7D6ZST7_9CLOTDihydroorotatedehydrogenaseB(NAD(+)),electrontransfersubunitOS=ClostridiumintestinaleOX=36845GN=pyrKPE=3SV=1	tr|A0A7D6ZST7|A0A7D6ZST7_9CLOTDihydroorotatedehydrogenaseB(NAD(+)),electrontransfersubunitOS=ClostridiumintestinaleOX=36845GN=pyrKPE=3SV=1	tr|A0A7D6ZST7|A0A7D6ZST7_9CLOTDihydroorotatedehydrogenaseB(NAD(+)),electrontransfersubunitOS=ClostridiumintestinaleOX=36845GN=pyrKPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	546.3280029296875	2	546.326599	1090.63865	-0.075544	-4.1271E-05	-1.3739	-0.00075059	-1.4494	-0.00079186	546.3261869459654	64.888	1.987	64.888	64.588	66.575	0					165	49	5	0	0	0	0.13482	1	5945	5945		87.754	2.8388	1	23011000			18051	35743	14700	14721	20078	20078					0.09695175545516577
IFSLQLQLL	9	Unmodified	_IFSLQLQLL_					0	0	0			REV__ENST00000422248.6_1_3:150804532-150804739:+|nuORF	REV__ENST00000422248.6_1_3:150804532-150804739:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.8327026367188	2	537.831517	1073.64848	-1.0759	-0.00057866	3.417	0.0018378	2.3411	0.0012591	537.8332038010457	94.419	0.94319	91.951	91.618	92.561	-2.4685					34	18	2	0	0	0	0.091859	1	8268	8268		99.375	3.5598	1	282080	+		18052	25618	14701	14722	20079	20079					0.11460363550895636
IFSLYMFN	8	Unmodified	_IFSLYMFN_					0	0	0			REV__chr1:103745515-103750424|261|25.86|0.0|21.3|+|1|TE_info:HERVE_a-int,HERVE_a-int_dup8,ERV1,LTR,donor,-,103742654,103745515|None,AMY1C|52	REV__chr1:103745515-103750424|261|25.86|0.0|21.3|+|1|TE_info:HERVE_a-int,HERVE_a-int_dup8,ERV1,LTR,donor,-,103742654,103745515|None,AMY1C|52	MULTI-MSMS	OvCa99_classI_Rep5	1	517.7551879882812	2	517.754421	1033.49429	1.7466	0.00090432	0.30471	0.00015776	2.0513	0.0010621	517.7543981629316	98.706	1.4068	98.706	97.954	99.361	0					75	33	3	0	0	0	0.62934	1	10907	10907		57.811	6.4758	1	7437800	+		18053	15793	14702	14723	20080	20080					-0.02111789206105641
IFSNLLTTP	9	Unmodified	_IFSNLLTTP_					0	0	0			REV__L1M4_dup669|chr1:145841513-145841995:-|1.3321024439662876|0.3377737044666122|1.98|429.0|22|1|anti-sense	REV__L1M4_dup669|chr1:145841513-145841995:-|1.3321024439662876|0.3377737044666122|1.98|429.0|22|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.2825622558594	2	503.2844	1004.55425	-0.10977	-5.5244E-05	-0.34007	-0.00017115	-0.44984	-0.0002264	503.28403729511336	112.98	2.1932	111.53	110.54	112.73	-1.4461					96	43	4	0	0	0	0.28934	1	10488	10488		64.207	0	1	450900	+		18054	28363	14703	14724	20081	20081					0.0521522472874949
IFSPHGSDDWP	11	Unmodified	_IFSPHGSDDWP_					0	0	0		ENST00000476700.5_1_7:134671329-134695013:+|nuORF	ENST00000476700.5_1_7:134671329-134695013:+|nuORF	ENST00000476700.5_1_7:134671329-134695013:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	629.2781982421875	2	629.280377	1256.5462	-2.0177	-0.0012697	-1.7494	-0.0011009	-3.7671	-0.0023705	629.2792052758709	117.72	2.1801	117.57	117.19	119.37	-0.14755					115	43	5	0	0	0	0.62497	1	11314	11314		42.396	1.618	1	400120			18055	12469	14704	14725	20082	20082					-0.07180954258660677
IFSPNVVNL	9	Unmodified	_IFSPNVVNL_					0	0	0		nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	MULTI-MSMS	OvCa99_classI_Rep5	1	501.785888671875	2	501.784567	1001.55458	1.7399	0.00087304	0.19859	9.9649E-05	1.9384	0.00097268	501.78451213186736	117.25	0.73885	117.25	116.82	117.56	0					33	15	3	0	0	0	0.14855	1	13421	13421		85.161	2.8558	1	684160			18056	1775	14705	14726	20083	20083					0.05386644448606148
IFSPVFNF	8	Unmodified	_IFSPVFNF_					0	0	0		ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	MULTI-MSMS	OvCa99_classI_Rep5	1	485.7576904296875	2	485.755278	969.496004	1.0595	0.00051467	-0.27452	-0.00013335	0.785	0.00038132	485.75510032765897	155.68	0.46225	155.68	155.43	155.89	0					13	8	2	0	0	0	0.68714	1	18245	18245		45.952	3.4775	1	21908			18057	4615	14706	14727	20084	20084					0.010035878741405213
IFSTLIHKL	9	Unmodified	_IFSTLIHKL_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MULTI-MSMS	OvCa99_classI_Rep5	1	536.3304443359375	2	536.331685	1070.64882	-0.080099	-4.296E-05	-3.7605	-0.0020169	-3.8406	-0.0020598	536.3295446430315	69.205	1.2305	69.205	68.9	70.13	0					69	29	4	0	0	0	0.16562	1	6596	6596		82.241	20.133	1	5298500			18058	3405	14707	14728	20085	20085					0.11631783270740925
IFSTQFVQW	9	Unmodified	_IFSTQFVQW_					0	0	0			REV__ENST00000391785.7_1_19:53087137-53087215:+|nuORF	REV__ENST00000391785.7_1_19:53087137-53087215:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2887573242188	2	578.295299	1154.57605	-7.6021	-0.0043963	-2.1936	-0.0012685	-9.7957	-0.0056648	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.38529	1	13911	13911		53.351	0.41475	1	1429200	+		18059	25241	14708	14729	20086	20086					0.004940294773177811
IFSYVCRLF	9	Unmodified	_IFSYVCRLF_					0	0	0		L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|374|3|anti-sense	L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|374|3|anti-sense	L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|374|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	574.3024291992188	2	574.30207	1146.58959	-0.32228	-0.00018508	-1.7436	-0.0010013	-2.0658	-0.0011864	574.3012965384783	30.687	0.83693	27.977	27.804	28.641	-2.7097					34	16	3	0	0	0	0.62352	1	875	875		29.15	0	1	116960			18060	14695	14709	14730	20087	20087					0.022155639848961073
IFTAAREGR	9	Unmodified	_IFTAAREGR_					0	0	0		ENSG00000169905|ENST00000609928|TOR1AIP2	ENSG00000169905|ENST00000609928|TOR1AIP2	ENSG00000169905|ENST00000609928|TOR1AIP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.3123779296875	2	510.78289	1019.55123	2.174	0.0011104	-4.3656	-0.0022299	-2.1916	-0.0011194	511.2827923932691	118.04	0.22951	118.04	117.93	118.16	0					6	4	2	0	0	0	0.027462	1	13543	13543		40.778	0	1	29568			18061	7052	14710	14731	20088	20088					0.04223394394614388
IFTARLYYF	9	Unmodified	_IFTARLYYF_					0	0	0		ENSG00000244509|ENST00000361441|APOBEC3C;ENSG00000128394|ENST00000308521|APOBEC3F	ENSG00000244509|ENST00000361441|APOBEC3C	ENSG00000244509|ENST00000361441|APOBEC3C	MULTI-MSMS	OvCa99_classI_Rep5	1	597.3219604492188	2	597.321317	1192.62808	1.366	0.00081593	0.35035	0.00020927	1.7163	0.0010252	597.3213178795536	123.47	0.69044	123.47	123.18	123.87	0					33	14	3	0	0	0	0.22961	1	14249	14249		71.296	7.7619	1	563690			18062	3879	14711	14732	20089	20089					0.03947192891064333
IFTDIFHYL	9	Unmodified	_IFTDIFHYL_					0	0	0		XRN1|p.G1339Efs*6|1|0.06|ENSG00000114127|chr3:142333013-142333014|-/T|frameshift_variant;ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1;XRN1|p.G776Rfs*16|1|0.03|ENSG00000114127|chr3:142397343-142397344|-/C|frameshift_variant	XRN1|p.G1339Efs*6|1|0.06|ENSG00000114127|chr3:142333013-142333014|-/T|frameshift_variant	XRN1|p.G1339Efs*6|1|0.06|ENSG00000114127|chr3:142333013-142333014|-/T|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	584.8079833984375	2	584.8055	1167.59645	0.56844	0.00033243	1.5482	0.00090537	2.1166	0.0012378	584.806269935768	152.6	1.4751	152.6	152.21	153.69	0					71	33	3	0	0	0	0.25214	1	17877	17877		68.485	12.98	1	397540			18063	3014	14712	14733	20090	20090					0.019352001371316874
IFTDLSSRF	9	Unmodified	_IFTDLSSRF_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5-VWA3B|1|fusion	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	OvCa99_classI_Rep5	1	543.2852172851562	2	543.284931	1084.55531	-0.22284	-0.00012107	-0.48473	-0.00026335	-0.70757	-0.00038441	543.2846195975762	104.79	1.9552	104.79	104.49	106.45	0					105	44	3	0	0	0	0.021573	2	11740	11740;11765		145.16	54.786	1	14084000			18064	1607	14713	14734	20091;20092	20091					0.016414390976706272
IFTDVALKF	9	Unmodified	_IFTDVALKF_					0	0	0		ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	MULTI-MSMS	OvCa99_classI_Rep5	1	527.8057250976562	2	527.302593	1052.59063	1.7563	0.00092613	0.42356	0.00022334	2.1799	0.0011495	527.3026095808294	122.31	1.0539	122.31	122.04	123.09	0					35	22	2	0	0	0	0.045281	1	14079	14079		122.18	25.986	1	410000			18065	3712	14714	14735	20093	20093					0.06644101625465737
IFTGWGAL	8	Unmodified	_IFTGWGAL_					0	0	0		ENST00000464356.6_2_1:156437035-156437317:-|nuORF	ENST00000464356.6_2_1:156437035-156437317:-|nuORF	ENST00000464356.6_2_1:156437035-156437317:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	432.7335205078125	2	432.734346	863.454139	-0.13449	-5.8199E-05	-4.4619	-0.0019308	-4.5964	-0.001989	432.73231227352187	54.095	2.1988	50.848	50.415	52.614	-3.2474					82	42	3	0	0	0	0.52992	1	3327	3327		74.517	8.7134	1	735470			18066	12250	14715	14736	20094	20094					0.01695032185614309
IFTLCPACL	9	Unmodified	_IFTLCPACL_					0	0	0		ENST00000451868.2_1_12:123484929-123519149:-|nuORF	ENST00000451868.2_1_12:123484929-123519149:-|nuORF	ENST00000451868.2_1_12:123484929-123519149:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.7519836425781	2	490.750824	979.487096	3.668	0.0018001	-0.30511	-0.00014973	3.3629	0.0016504	490.75037923157487	133.69	1.2288	132.16	131.8	133.03	-1.5257					59	24	4	0	0	0	0.52083	1	12915	12915		40.573	0	1	111650			18067	12049	14716	14737	20095	20095					-0.0034684507821793886
IFTLIDLKF	9	Unmodified	_IFTLIDLKF_					0	0	0			REV__tr|A0A553SSC8|A0A553SSC8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02845PE=4SV=1	REV__tr|A0A553SSC8|A0A553SSC8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02845PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	555.3334350585938	2	555.333893	1108.65323	2.238	0.0012428	-0.22692	-0.00012601	2.0111	0.0011168	555.3333214515236	136.86	0.57564	136.86	136.63	137.21	0					23	11	3	0	0	0	0.38529	1	15963	15963		53.351	0	1	88385	+		18068	30822	14717	14738	20096	20096					0.10325247693640449
IFTLLLYDI	9	Unmodified	_IFTLLLYDI_					0	0	0			REV__ENSG00000119927|ENST00000348367|GPAM	REV__ENSG00000119927|ENST00000348367|GPAM	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.8313598632812	2	555.825901	1109.63725	1.4905	0.00082846	-3.1682	-0.001761	-1.6777	-0.0009325	556.3261150396017	132.84	0.83711	132.84	132.6	133.44	0					19	17	2	0	0	0	0.027462	1	15478	15478		45.952	21.749	1	209460	+		18069	18474	14718	14739	20097	20097					0.08681541456735431
IFTNTVARF	9	Unmodified	_IFTNTVARF_					0	0	0		AKAP11|p.D1747Mfs*9|1|0.11|ENSG00000023516|chr13:42308573-42308573|A/-|frameshift_variant;ENSG00000023516|ENST00000025301|AKAP11;AKAP11|p.V710Sfs*3|1|0.03|ENSG00000023516|chr13:42300873-42300892|TGTGACCTTTACAACAAAGG/-|frameshift_variant	AKAP11|p.D1747Mfs*9|1|0.11|ENSG00000023516|chr13:42308573-42308573|A/-|frameshift_variant	AKAP11|p.D1747Mfs*9|1|0.11|ENSG00000023516|chr13:42308573-42308573|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	534.7979125976562	2	534.795466	1067.57638	1.9978	0.0010684	0.019624	1.0495E-05	2.0174	0.0010789	534.7952971405971	91.961	1.1384	91.961	91.582	92.721	0					56	26	3	0	0	0	0.035142	2	9913	9913;9950		131.03	47.744	1	3720000			18070	54	14719	14740	20098;20099	20098					0.045294491971844764
IFVARATSEV	10	Unmodified	_IFVARATSEV_					0	0	0		ENSG00000135740|ENST00000299798|SLC9A5	ENSG00000135740|ENST00000299798|SLC9A5	ENSG00000135740|ENST00000299798|SLC9A5	MULTI-MSMS	OvCa99_classI_Rep5	1	546.8035888671875	2	546.806031	1091.59751	3.0324	0.0016581	-0.66851	-0.00036555	2.3639	0.0012926	546.8055794996549	97.417	1.0307	97.417	96.881	97.912	0					71	23	4	0	0	0	0.34811	1	10682	10682		75.043	10.836	1	4745700			18071	4410	14720	14741	20100	20100					0.05537414506034111
IFVDWRDGN	9	Unmodified	_IFVDWRDGN_					0	0	0		tr|A0A7D6VQL1|A0A7D6VQL1_9CLOTDUF5050domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21585PE=4SV=1	tr|A0A7D6VQL1|A0A7D6VQL1_9CLOTDUF5050domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21585PE=4SV=1	tr|A0A7D6VQL1|A0A7D6VQL1_9CLOTDUF5050domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21585PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.3212890625	2	561.272355	1120.53016	-1.5883	-0.00089148	4.0348	0.0022646	2.4464	0.0013731	561.7766496839564	103.91	0.55225	103.91	103.55	104.11	0					19	12	2	0	0	0	0.027402	1	11640	11640		76.774	12.567	1	140070			18072	34856	14721	14742	20101	20101					-0.02528615704909498
IFVEETLVKI	10	Unmodified	_IFVEETLVKI_					0	0	0			REV__ENSG00000128606|ENST00000339431|LRRC17	REV__ENSG00000128606|ENST00000339431|LRRC17	MULTI-MSMS	OvCa9_classI_Rep3	3	595.8527221679688	2	595.855189	1189.69583	0.065118	3.8801E-05	-2.7305	-0.001627	-2.6654	-0.0015882	595.8535881527235	87.861	1.3559	85.684	85.396	86.752	-2.1768					74	26	4	0	0	0	0.49558	1	5324	5324		54.776	6.8168	1	684060	+		18073	18864	14722	14743	20102	20102					0.10856598031227804
IFVEQRIL	8	Unmodified	_IFVEQRIL_					0	0	0		ENSG00000072657|ENST00000261180|TRHDE	ENSG00000072657|ENST00000261180|TRHDE	ENSG00000072657|ENST00000261180|TRHDE	MULTI-SECPEP	OvCa9_classI_Rep2	2	509.7860107421875	2	509.30821	1016.60187	-0.48197	-0.00024547	0.59538	0.00030323	0.11341	5.7761E-05	509.3084227206468	98.269	0.54095	97.376	97.216	97.757	-0.89305					14	10	2	0	0	0	0.028476	1	8964	8964		53.351	0	1	23537			18074	1476	14723	14744	20103	20103					0.09422923719614573
IFVHGALCVSY	11	Carbamidomethyl (C)	_IFVHGALC(Carbamidomethyl (C))VSY_	IFVHGALC(1)VSY		IFVHGALC(46)VSY		0	1	0		tr|A0A7D6ZVE9|A0A7D6ZVE9_9CLOTU32familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14785PE=4SV=1	tr|A0A7D6ZVE9|A0A7D6ZVE9_9CLOTU32familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14785PE=4SV=1	tr|A0A7D6ZVE9|A0A7D6ZVE9_9CLOTU32familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14785PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	422.5499267578125	3	422.549753	1264.62743	0.75974	0.00032103	-0.96856	-0.00040926	-0.20882	-8.8235E-05	422.5493004763819	36.711	1.1454	33.819	33.546	34.691	-2.8925					57	22	3	0	0	0	0.5804	1	1300	1300		46.457	14.823	1	307260			18075	35802	14724	14745	20104	20104	390				0.005700301797332941
IFVIEMGVI	9	Oxidation (M)	_IFVIEM(Oxidation (M))GVI_		IFVIEM(1)GVI		IFVIEM(52)GVI	0	0	1			REV__ENSG00000186795|ENST00000334549|KCNK18	REV__ENSG00000186795|ENST00000334549|KCNK18	MULTI-MSMS	OvCa99_classI_Rep5	1	518.7932739257812	2	518.791004	1035.56745	2.0376	0.0010571	2.9486	0.0015297	4.9861	0.0025868	518.7925074829448	106.35	1.5192	106.35	105.88	107.4	0					57	31	3	0	0	0	0.39645	1	11981	11981		52.299	6.3269	1	2384500	+		18076	22610	14725	14746	20105	20105		521			0.051093395164798494
IFVIFILSTA	10	Unmodified	_IFVIFILSTA_					0	0	0		ENST00000378954.8_1_2:38522031-38522217:-|nuORF	ENST00000378954.8_1_2:38522031-38522217:-|nuORF	ENST00000378954.8_1_2:38522031-38522217:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	562.3428344726562	2	562.341718	1122.66888	-1.142	-0.00064221	3.7902	0.0021314	2.6482	0.0014892	562.3438081477608	141.84	4.7959	141.62	140.24	145.03	-0.22697					133	96	2	0	0	0	0.81992	1	14212	14212		16.473	0.83134	1	113870			18077	11114	14726	14747	20106	20106					0.11245534210706865
IFVIIITPGE	10	Unmodified	_IFVIIITPGE_					0	0	0			REV__tr|A0A553SRL3|A0A553SRL3_NIACIATPsynthaseF0subunit8OS=NialliacirculansOX=1397GN=CEQ21_01320PE=4SV=1	REV__tr|A0A553SRL3|A0A553SRL3_NIACIATPsynthaseF0subunit8OS=NialliacirculansOX=1397GN=CEQ21_01320PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.25927734375	2	551.33135	1100.64815	-0.88964	-0.00049049	-2.7844	-0.0015351	-3.6741	-0.0020256	551.3297738501713	53.334	1.2716	50.126	49.746	51.018	-3.208					58	24	3	0	0	0	0.026734	1	3280	3280		47.657	12.039	1	138280	+		18078	30744	14727	14748	20107	20107					0.10184943831018245
IFVIIITPGE	10	Unmodified	_IFVIIITPGE_					0	0	0			REV__tr|A0A553SRL3|A0A553SRL3_NIACIATPsynthaseF0subunit8OS=NialliacirculansOX=1397GN=CEQ21_01320PE=4SV=1	REV__tr|A0A553SRL3|A0A553SRL3_NIACIATPsynthaseF0subunit8OS=NialliacirculansOX=1397GN=CEQ21_01320PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	551.33135	1100.64815	-0.56814	-0.00031323	-2.7055	-0.0014916	-3.2737	-0.0018049	551.3298447910453	52.873	1.3849	50.059	49.69	51.075	-2.8139	-0.033536	2.9965E-05	NaN	47.657	57	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115790	+		18079	30744	14727	14748							0.10184943831018245
IFVIQSESL	9	Unmodified	_IFVIQSESL_					0	0	0		nc|ENSG00000153246|Q13018-2|PLA2R1;ENSG00000153246|ENST00000283243|PLA2R1	nc|ENSG00000153246|Q13018-2|PLA2R1	nc|ENSG00000153246|Q13018-2|PLA2R1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.7972412109375	2	518.289682	1034.56481	0.11951	6.1939E-05	1.2409	0.00064312	1.3604	0.00070506	518.2902966064358	111.59	1.1001	110.08	109.95	111.05	-1.5111					32	20	2	0	0	0	0.027462	1	10281	10281		27.882	5.9224	1	261420			18080	5671	14728	14749	20108	20108					0.04891207383184337
IFVIVWTLVD	10	Unmodified	_IFVIVWTLVD_					0	0	0		ENSG00000116329|ENST00000234961|OPRD1	ENSG00000116329|ENST00000234961|OPRD1	ENSG00000116329|ENST00000234961|OPRD1	MULTI-MSMS	OvCa9_classI_Rep3	3	602.856689453125	2	602.85245	1203.69035	2.2611	0.0013631	3.6502	0.0022005	5.9113	0.0035636	602.8544543064842	71.261	1.6459	68.658	68.074	69.72	-2.6023					101	32	5	0	0	0	0.37918	1	3302	3302		71.296	14.575	1	817540			18081	3174	14729	14750	20109	20109					0.09664919239389747
IFVPGDGTLI	10	Unmodified	_IFVPGDGTLI_					0	0	0			REV__ENST00000513888.5_1_5:6600041-6604993:-|nuORF	REV__ENST00000513888.5_1_5:6600041-6604993:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2919921875	2	516.292225	1030.5699	1.2666	0.00065396	3.6106	0.0018641	4.8772	0.0025181	516.2939767200286	148.01	0.6855	148.01	147.79	148.47	0					19	13	2	0	0	0	0.026688	1	17367	17367		32.812	0	1	70039	+		18082	26980	14730	14751	20110	20110					0.05583511245822592
IFVPLPAML	9	Unmodified	_IFVPLPAML_					0	0	0			REV__OR51E1|p.I210Lfs*22|1|0.09|ENSG00000180785|chr11:4653154-4653154|A/-|frameshift_variant	REV__OR51E1|p.I210Lfs*22|1|0.09|ENSG00000180785|chr11:4653154-4653154|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	500.7982482910156	2	500.798632	999.582711	-4.5773	-0.0022923	4.0069	0.0020067	-0.57038	-0.00028565	500.8005489314557	149.34	2.1117	148.39	147.7	149.81	-0.9512					96	41	4	0	0	0	0.68641	1	12654	12654		21.702	0	1	278740	+		18083	22196	14731	14752	20111	20111					0.08290251104347135
IFVRFLIL	8	Unmodified	_IFVRFLIL_					0	0	0		L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|136|2|anti-sense	L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|136|2|anti-sense	L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|136|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.8316345214844	2	510.833863	1019.65317	-0.32483	-0.00016593	-3.9955	-0.002041	-4.3203	-0.002207	510.8317329543334	121.75	1.4156	120.4	120.11	121.52	-1.3479					49	27	2	0	0	0	0.73288	1	11516	11516		35.201	0	1	285320			18084	14542	14732	14753	20112	20112					0.1441329248433476
IFVRTFLKP	9	Unmodified	_IFVRTFLKP_					0	0	0		ENST00000496455.6_1_3:155640005-155640056:+|nuORF	ENST00000496455.6_1_3:155640005-155640056:+|nuORF	ENST00000496455.6_1_3:155640005-155640056:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.82861328125	2	560.847502	1119.68045	0.014306	8.0238E-06	-2.849	-0.0015979	-2.8347	-0.0015898	560.8457585857838	70.39	0.28191	70.39	70.246	70.528	0					9	6	2	0	0	0	0.027462	1	6742	6742		24.519	12.312	1	413280			18085	12788	14733	14754	20113	20113					0.1253977602470968
IFVVICNGFM	10	Carbamidomethyl (C),Oxidation (M)	_IFVVIC(Carbamidomethyl (C))NGFM(Oxidation (M))_	IFVVIC(1)NGFM	IFVVICNGFM(1)	IFVVIC(53)NGFM	IFVVICNGFM(53)	0	1	1			REV__ENSG00000167332|ENST00000396950|OR51E2	REV__ENSG00000167332|ENST00000396950|OR51E2	MULTI-MSMS	OvCa9_classI_Rep4_	4	608.2975463867188	2	608.29867	1214.58279	0.47062	0.00028628	-4.1039	-0.0024964	-3.6333	-0.0022101	608.2961852172294	58.97	2.6323	55.578	55.15	57.782	-3.392					100	52	2	0	0	0	0.50656	1	3953	3953		53.351	19.179	1	2056500	+		18086	21271	14734	14755	20114	20114	235	494			-0.015921169579769412
IFWKMKNI	8	Unmodified	_IFWKMKNI_					0	0	0		ENST00000251775.8_1_3:125179648-125188319:-|nuORF	ENST00000251775.8_1_3:125179648-125188319:-|nuORF	ENST00000251775.8_1_3:125179648-125188319:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3096313476562	2	540.307155	1078.59976	1.25	0.00067539	1.4342	0.00077491	2.6842	0.0014503	540.3077955858466	119.23	3.2776	118.2	117.78	121.06	-1.0271					179	64	5	0	0	0	0.47599	1	9145	9145		79.939	8.0618	1	415420			18087	9800	14735	14756	20115	20115					0.06360171710139184
IFWRKKRKDAK	11	Unmodified	_IFWRKKRKDAK_					0	0	0		nc|ENSG00000149177|Q12913-3|PTPRJ;ENSG00000149177|ENST00000418331|PTPRJ;ENST00000527026.1_1_11:48166660-48171041:+|nuORF	nc|ENSG00000149177|Q12913-3|PTPRJ	nc|ENSG00000149177|Q12913-3|PTPRJ	MULTI-MSMS	OvCa9_classI_Rep2	2	492.9696960449219	3	492.636772	1474.88849	-4.4123	-0.0021737	-0.46274	-0.00022796	-4.8751	-0.0024016	492.6364518280441	160.52	2.4825	160.29	159.35	161.83	-0.22697					136	50	4	0	0	0	0.72538	1	16398	16398		10.587	3.9272	1	91160			18088	15084	14736	14757	20116	20116					0.1700377794174983
IFWSSFVGGGV	11	Unmodified	_IFWSSFVGGGV_					0	0	0		ENSG00000160606|ENST00000292090|TLCD1;nc|ENSG00000160606|Q96CP7-2|TLCD1	ENSG00000160606|ENST00000292090|TLCD1	ENSG00000160606|ENST00000292090|TLCD1	MULTI-MSMS	OvCa9_classI_Rep2	2	578.2902221679688	2	578.295299	1154.57605	-5.4887	-0.0031741	-4.2165	-0.0024384	-9.7053	-0.0056125	578.2927598597663	159.22	4.1126	158.99	158.53	162.64	-0.22697					262	82	5	0	0	0	0.68684	1	16304	16304		34.173	2.2177	1	1073400			18089	6075	14737	14758	20117	20117					0.004940294773405185
IFYAVMQTF	9	Oxidation (M)	_IFYAVM(Oxidation (M))QTF_		IFYAVM(1)QTF		IFYAVM(88)QTF	0	0	1			REV__ENST00000544665.7_1_16:31343862-31344042:+|nuORF	REV__ENST00000544665.7_1_16:31343862-31344042:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	568.2769165039062	2	568.27826	1134.54197	2.1011	0.001194	-2.9394	-0.0016704	-0.83828	-0.00047638	568.2765027479891	136.61	2.2917	136.61	136.16	138.45	0					134	48	5	0	0	0	0.13482	1	16021	16021		87.754	26.782	1	2795500	+		18090	27402	14738	14759	20118	20118		609			-0.01992135005957607
IFYFTQLK	8	Unmodified	_IFYFTQLK_					0	0	0			REV__L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|322|3|anti-sense	REV__L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|322|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	530.2994384765625	2	530.29731	1058.58007	0.54483	0.00028892	1.4395	0.00076339	1.9844	0.0010523	530.2978272722688	114.8	1.4354	114.8	114.24	115.68	0					51	30	3	0	0	0	0.59148	1	13113	13113		65.803	1.5959	1	288820	+		18091	28370	14739	14760	20119	20119					0.053121189710282124
IFYFTQLK	8	Unmodified	_IFYFTQLK_					0	0	0			REV__L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|322|3|anti-sense	REV__L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|322|3|anti-sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.29731	1058.58007	-1.0347	-0.00054871	-2.4105	-0.0012783	-3.4452	-0.001827	530.7965376488307	115.06	0.19779	114.94	114.8	115	-0.11777	0.072721	-0.0038176	NaN	65.803	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4380.8	+		18092	28370	14739	14760							0.053121189710282124
IFYGHIDC	8	Unmodified	_IFYGHIDC_					0	0	0		nc|ENSG00000005700|Q9P2D0-2|IBTK;ENST00000369751.2_1_6:82901346-82950269:-|nuORF;IBTK|p.P1251Qfs*12|1|0.05|ENSG00000005700|chr6:82173412-82173412|G/-|frameshift_variant;ENSG00000005700|ENST00000306270|IBTK;ENST00000505222.5_1_6:82901346-82950269:-|nuORF	nc|ENSG00000005700|Q9P2D0-2|IBTK	nc|ENSG00000005700|Q9P2D0-2|IBTK	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.30242919921875	2	484.220746	966.426938	2.4081	0.0011661	-4.2213	-0.0020441	-1.8132	-0.00087799	484.2186006201438	88.856	0.28506	88.856	88.677	88.962	0					10	6	2	0	0	0	0.028476	1	9474	9474		13.775	2.9098	1	114560			18093	857	14740	14761	20120	20120					-0.057618194170686365
IFYHYWKKPWR	11	Unmodified	_IFYHYWKKPWR_					0	0	0		tr|A0A7D6ZJX3|A0A7D6ZJX3_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06795PE=4SV=1	tr|A0A7D6ZJX3|A0A7D6ZJX3_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06795PE=4SV=1	tr|A0A7D6ZJX3|A0A7D6ZJX3_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06795PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	406.216552734375	4	406.720036	1622.85104	0.75063	0.0003053	2.906	0.0011819	3.6567	0.0014872	406.9720472056783	55.213	0.37847	55.213	54.98	55.358	0					12	8	2	0	0	0	0.02653	1	4486	4486		1.4188	0	1	175630			18094	35651	14741	14762	20121	20121					0.06452686676129815
IFYLKLEDL	9	Unmodified	_IFYLKLEDL_					0	0	0		ENSG00000123358|ENST00000394825|NR4A1;nc|ENSG00000123358|P22736-2|NR4A1;ENSG00000119508|ENST00000395097|NR4A3;nc|ENSG00000119508|Q92570-3|NR4A3;nc|ENSG00000153234|P43354-2|NR4A2;ENSG00000153234|ENST00000339562|NR4A2	ENSG00000123358|ENST00000394825|NR4A1;ENSG00000119508|ENST00000395097|NR4A3;nc|ENSG00000153234|P43354-2|NR4A2	nc|ENSG00000153234|P43354-2|NR4A2	MULTI-MSMS	OvCa99_classI_Rep5	1	577.3300170898438	2	577.328808	1152.64306	1.2199	0.00070426	0.31937	0.00018438	1.5392	0.00088864	577.3288770850424	130.08	6.9884	130.08	128.32	135.31	0					388	149	8	0	0	0	0.14998	4	15417	15220;15245;15269;15417		84.916	4.3838	1	7493100			18095	3591;3366;5669	14742	14763	20122;20123;20124;20125	20125					0.07284639968429474
IFYLSTVMLA	10	Unmodified	_IFYLSTVMLA_					0	0	0			REV__tr|A0A7D6VV32|A0A7D6VV32_9CLOTGlycosyltransferasefamily39proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22805PE=4SV=1	REV__tr|A0A7D6VV32|A0A7D6VV32_9CLOTGlycosyltransferasefamily39proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22805PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	579.289306640625	2	579.317386	1156.62022	-1.467	-0.00084986	3.1152	0.0018047	1.6482	0.00095482	579.3199936334698	100.62	0.84395	99.788	99.509	100.35	-0.83051					40	16	4	0	0	0	0.026697	1	9259	9259		37.159	0	1	106110	+		18096	31705	14743	14764	20126	20126					0.04817297579302249
IFYRRNLQ	8	Unmodified	_IFYRRNLQ_					0	0	0		ENSG00000139629|ENST00000356317|GALNT6;ENST00000603680.5_1_12:51748165-51753149:-|nuORF	ENSG00000139629|ENST00000356317|GALNT6	ENSG00000139629|ENST00000356317|GALNT6	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.2555541992188	2	555.314358	1108.61416	1.6397	0.00091054	3.9337	0.0021844	5.5734	0.003095	555.3169962164354	119.69	1.6519	119.69	118.53	120.18	0					68	37	4	0	0	0	0.028476	1	13765	13765		35.201	0	1	457250			18097	4791	14744	14765	20127	20127					0.06419960182665818
IGAAPLRPVS	10	Unmodified	_IGAAPLRPVS_					0	0	0		nc|ENSG00000125319|Q8N3J3-2|HROB;nc|ENSG00000125319|Q8N3J3-3|HROB;ENSG00000125319|ENST00000585683|HROB;nc|ENSG00000125319|Q8N3J3|HROB	nc|ENSG00000125319|Q8N3J3-2|HROB	nc|ENSG00000125319|Q8N3J3-2|HROB	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.2724304199219	2	490.798009	979.581465	-0.61435	-0.00030152	-0.3595	-0.00017644	-0.97384	-0.00047796	490.7975086012373	48.162	0.17585	48.162	48.028	48.204	0					5	3	2	0	0	0	0.026802	1	3504	3504		26.693	0	1	39992			18098	3698	14745	14766	20128	20128					0.09085753059810031
IGAEKAVQPN	10	Unmodified	_IGAEKAVQPN_					0	0	0			REV__nc|ENSG00000109685|O96028-6|NSD2	REV__nc|ENSG00000109685|O96028-6|NSD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.7999877929688	2	513.782556	1025.55056	0.2644	0.00013584	0.90113	0.00046298	1.1655	0.00059883	513.7823877556467	46.002	0.26939	46.002	45.8	46.069	0					10	5	3	0	0	0	0.026915	1	3209	3209		35.618	13.658	1	104390	+		18099	17942	14746	14767	20129	20129					0.03880554954912441
IGAFLAISGAL	11	Unmodified	_IGAFLAISGAL_					0	0	0		tr|A0A7D6VMM9|A0A7D6VMM9_9CLOTIronABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14240PE=3SV=1	tr|A0A7D6VMM9|A0A7D6VMM9_9CLOTIronABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14240PE=3SV=1	tr|A0A7D6VMM9|A0A7D6VMM9_9CLOTIronABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14240PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.8087158203125	2	516.808042	1031.60153	0.73501	0.00037986	0.82221	0.00042493	1.5572	0.00080478	516.808359095352	156.5	1.0064	156.5	156.19	157.2	0					34	19	3	0	0	0	0.43234	1	18357	18357		58.782	2.0609	1	246060			18100	34664	14747	14768	20130	20130					0.08699503999741864
IGAGLPVSEP	10	Unmodified	_IGAGLPVSEP_					0	0	0		tr|A0A7D6VPW8|A0A7D6VPW8_9CLOTCellshape-determiningproteinMreBOS=ClostridiumintestinaleOX=36845GN=mreBPE=3SV=1	tr|A0A7D6VPW8|A0A7D6VPW8_9CLOTCellshape-determiningproteinMreBOS=ClostridiumintestinaleOX=36845GN=mreBPE=3SV=1	tr|A0A7D6VPW8|A0A7D6VPW8_9CLOTCellshape-determiningproteinMreBOS=ClostridiumintestinaleOX=36845GN=mreBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.78253173828125	2	470.260925	938.507297	-0.053275	-2.5053E-05	-0.90115	-0.00042377	-0.95442	-0.00044883	470.25932064116915	43.217	0.25541	43.217	43.057	43.312	0					8	5	2	0	0	0	0.026768	1	2820	2820		24.203	0	1	56964			18101	34804	14748	14769	20131	20131					0.035583651776164515
IGALGHVGFA	10	Unmodified	_IGALGHVGFA_					0	0	0			REV__tr|A0A553SLV0|A0A553SLV0_NIACIAmmoniumtransporterOS=NialliacirculansOX=1397GN=CEQ21_21390PE=3SV=1	REV__tr|A0A553SLV0|A0A553SLV0_NIACIAmmoniumtransporterOS=NialliacirculansOX=1397GN=CEQ21_21390PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.796630859375	2	471.263802	940.513051	0.31568	0.00014877	0.54413	0.00025643	0.85981	0.0004052	471.2627618955085	79.645	1.0606	76.893	76.514	77.575	-2.7514					30	21	2	0	0	0	0.026672	1	6535	6535		44.531	0	1	45651	+		18102	30267	14749	14770	20132	20132					0.04041508479940603
IGALQLQL	8	Unmodified	_IGALQLQL_					0	0	0		ENST00000393448.6_1_5:179018652-179028988:+|nuORF;nc|ENSG00000176783|Q96T51-2|RUFY1;ENSG00000176783|ENST00000319449|RUFY1;ENST00000502531.1_1_5:179023563-179032937:+|nuORF	ENST00000393448.6_1_5:179018652-179028988:+|nuORF	ENST00000393448.6_1_5:179018652-179028988:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	428.2681579589844	2	428.268553	854.522553	-0.73394	-0.00031432	0.85228	0.000365	0.11834	5.0681E-05	428.26878401578796	74.16	2.8137	72.189	71.43	74.244	-1.9711					122	53	3	0	0	0	0.52992	1	6042	6042		74.517	0	1	460940			18103	7629	14750	14771	20133	20133					0.08947276765479728
IGALWHPD	8	Unmodified	_IGALWHPD_					0	0	0		nc|ENSG00000143258|Q9UK80-3|USP21;ENSG00000143258|ENST00000368002|USP21;ENST00000487163.5_1_1:161131815-161133927:+|nuORF;nc|ENSG00000143258|Q9UK80-2|USP21	nc|ENSG00000143258|Q9UK80-3|USP21	nc|ENSG00000143258|Q9UK80-3|USP21	MULTI-SECPEP	OvCa99_classI_Rep5	1	455.26715087890625	2	454.734877	907.455202	0.060827	2.766E-05	-4.0188	-0.0018275	-3.958	-0.0017998	454.7327319445964	44.897	0.45299	44.897	44.706	45.159	0					21	9	3	0	0	0	0.028476	1	3059	3059		52.299	15.271	1	307430			18104	5026	14751	14772	20134	20134					-0.002227534454846136
IGATILRV	8	Unmodified	_IGATILRV_					0	0	0		ENSG00000197233|ENST00000335302|OR1J2	ENSG00000197233|ENST00000335302|OR1J2	ENSG00000197233|ENST00000335302|OR1J2	MULTI-SECPEP	OvCa99_classI_Rep5	1	422.7391052246094	2	421.776545	841.538538	2.4234	0.0010222	0.1536	6.4787E-05	2.577	0.0010869	421.7764930099009	87.021	0.4134	87.021	86.844	87.257	0					13	9	2	0	0	0	0.028476	1	9190	9190		23.042	6.5693	1	223200			18105	8692	14752	14773	20135	20135					0.1114298300237806
IGATILRV	8	Unmodified	_IGATILRV_					0	0	0		ENSG00000197233|ENST00000335302|OR1J2	ENSG00000197233|ENST00000335302|OR1J2	ENSG00000197233|ENST00000335302|OR1J2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	421.776545	841.538538	1.8786	0.00079237	-2.0177	-0.00085103	-0.13907	-5.8658E-05	421.7756379912823	88.168	0.78609	86.801	86.543	87.329	-1.3676	-0.084306	-0.00077575	NaN	23.042	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20232			18106	8692	14752	14773							0.1114298300237806
IGATILRV	8	Unmodified	_IGATILRV_					0	0	0		ENSG00000197233|ENST00000335302|OR1J2	ENSG00000197233|ENST00000335302|OR1J2	ENSG00000197233|ENST00000335302|OR1J2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	421.776545	841.538538	0.26508	0.0001118	-0.77719	-0.0003278	-0.51211	-0.000216	421.77613411144677	88.924	0.82681	86.793	86.51	87.337	-2.1309	-0.092008	0.00027071	NaN	23.042	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48019			18107	8692	14752	14773							0.1114298300237806
IGAWYRYG	8	Unmodified	_IGAWYRYG_					0	0	0			REV__ENSG00000071537|ENST00000336735|SEL1L	REV__ENSG00000071537|ENST00000336735|SEL1L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.28741455078125	2	493.248152	984.481751	-1.4679	-0.00072404	-2.7318	-0.0013475	-4.1997	-0.0020715	493.2467257890547	49.105	0.57559	45.964	45.675	46.251	-3.1416					17	10	2	0	0	0	0.028476	1	2756	2756		15.636	4.1252	1	29631	+		18108	16902	14753	14774	20136	20136					-0.01111064554152108
IGAWYRYG	8	Unmodified	_IGAWYRYG_					0	0	0			REV__ENSG00000071537|ENST00000336735|SEL1L	REV__ENSG00000071537|ENST00000336735|SEL1L	MULTI-MATCH	OvCa99_classI_Rep5	1		2	493.248152	984.481751	0.16402	8.0902E-05	2.6647	0.0013144	2.8287	0.0013953	493.2514350429839	46.064	0.52476	46.064	45.844	46.369	0	0.050259	0.0044849	NaN	9.4706	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128570	+		18109	16902	14753	14774							-0.01111064554152108
IGCNLCFTEAL	11	Unmodified	_IGCNLCFTEAL_					0	0	0			REV__nc|ENSG00000113522|Q92878-2|RAD50	REV__nc|ENSG00000113522|Q92878-2|RAD50	MULTI-MSMS	OvCa99_classI_Rep5	1	592.2792358398438	2	592.277934	1182.54132	1.2906	0.00076441	0.82593	0.00048918	2.1166	0.0012536	592.2780681526771	145.32	1.0415	145.32	145.04	146.08	0					58	21	3	0	0	0	0.61983	1	17005	17005		42.864	4.0581	1	499550	+		18110	18153	14754	14775	20137	20137					-0.042652977172792816
IGDNLVRLL	9	Unmodified	_IGDNLVRLL_					0	0	0			REV__nc|ENSG00000266733|Q9UFV1|TBC1D29P	REV__nc|ENSG00000266733|Q9UFV1|TBC1D29P	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.8121337890625	2	506.811116	1011.60768	0.31561	0.00015995	-1.485	-0.00075259	-1.1694	-0.00059264	506.81045586251577	89.749	2.4253	87.174	86.704	89.129	-2.575					167	47	5	0	0	0	0.16524	1	7716	7716		82.305	2.854	1	8441000	+		18111	29188	14755	14776	20138	20138					0.10234022231293238
IGDSHVPLYLQ	11	Unmodified	_IGDSHVPLYLQ_					0	0	0			REV__ENST00000260128.8_1_8:70570870-70571554:+|nuORF	REV__ENST00000260128.8_1_8:70570870-70571554:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	414.5556640625	3	414.555672	1240.64519	-0.28529	-0.00011827	0.4614	0.00019128	0.17611	7.3009E-05	414.5557903844835	55.46	1.3392	52.646	52.322	53.661	-2.8139					83	26	5	0	0	0	0.58572	1	3864	3864		47.228	0	1	295090	+		18112	23920	14756	14777	20139	20139					0.03449068706231628
IGEITSLIQ	9	Unmodified	_IGEITSLIQ_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-MSMS	OvCa99_classI_Rep5	1	487.2825012207031	2	487.281857	972.549162	1.5699	0.00076498	0.70914	0.00034555	2.279	0.0011105	487.28210567064394	92.193	0.842	92.193	91.92	92.762	0					50	19	4	0	0	0	0.11171	1	9964	9964		94.006	3.2298	1	5706400	+		18113	19832	14757	14778	20140	20140					0.06178920866148019
IGEIYYAIKYP	11	Unmodified	_IGEIYYAIKYP_					0	0	0			REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	443.58575439453125	3	443.907823	1328.70164	-0.24382	-0.00010824	-0.76628	-0.00034016	-1.0101	-0.00044839	443.908793102592	20.488	0.45759	19.149	18.803	19.26	-1.3386					10	8	2	0	0	0	0.025818	1	22	22		36.318	13.756	1	4448.1	+		18114	22973	14758	14779	20141	20141					0.050436965428843905
IGEKKGGLIA	10	Unmodified	_IGEKKGGLIA_					0	0	0		tr|A0A7D7A4X8|A0A7D7A4X8_9CLOTCa(2+)/H(+)antiporterOS=ClostridiumintestinaleOX=36845GN=caxPE=3SV=1	tr|A0A7D7A4X8|A0A7D7A4X8_9CLOTCa(2+)/H(+)antiporterOS=ClostridiumintestinaleOX=36845GN=caxPE=3SV=1	tr|A0A7D7A4X8|A0A7D7A4X8_9CLOTCa(2+)/H(+)antiporterOS=ClostridiumintestinaleOX=36845GN=caxPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.78717041015625	2	493.305667	984.596781	-0.24527	-0.00012099	0.58286	0.00028753	0.33759	0.00016654	493.3069067736495	121.49	0.29631	121.29	121.15	121.44	-0.19718					6	5	2	0	0	0	0.026635	1	11754	11754		47.657	0	1	3597.4			18115	36157	14759	14780	20142	20142					0.10386619857013102
IGELGIIKN	9	Unmodified	_IGELGIIKN_					0	0	0			REV__tr|A0A7D6ZPY2|A0A7D6ZPY2_9CLOTCarbamoylphosphatesynthasesmallchainOS=ClostridiumintestinaleOX=36845GN=carAPE=3SV=1	REV__tr|A0A7D6ZPY2|A0A7D6ZPY2_9CLOTCarbamoylphosphatesynthasesmallchainOS=ClostridiumintestinaleOX=36845GN=carAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.7935791015625	2	478.792392	955.570232	0.15994	7.658E-05	-1.1093	-0.0005311	-0.94931	-0.00045452	478.7917117307407	83.32	2.5938	80.657	80.145	82.738	-2.6629					118	53	4	0	0	0	0.46377	1	6926	6926		45.952	1.8352	1	1612900	+		18116	32142	14760	14781	20143	20143					0.09066930965661868
IGERLPIR	8	Unmodified	_IGERLPIR_					0	0	0		ENSG00000160190|ENST00000352133|SLC37A1	ENSG00000160190|ENST00000352133|SLC37A1	ENSG00000160190|ENST00000352133|SLC37A1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.7738037109375	2	477.298176	952.581799	-0.65467	-0.00031248	0.20725	9.8919E-05	-0.44743	-0.00021356	477.298100272263	73.399	0.82108	70.003	69.736	70.557	-3.3961					26	16	2	0	0	0	0.028476	1	5722	5722		40.573	0	1	132560			18117	6042	14761	14782	20144	20144					0.10361172779653316
IGERLPIR	8	Unmodified	_IGERLPIR_					0	0	0		ENSG00000160190|ENST00000352133|SLC37A1	ENSG00000160190|ENST00000352133|SLC37A1	ENSG00000160190|ENST00000352133|SLC37A1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	477.298176	952.581799	0.094013	4.4872E-05	-0.46203	-0.00022052	-0.36801	-0.00017565	477.2978481579727	72.211	0.73248	69.704	69.433	70.165	-2.5071	-0.096773	-0.00013077	NaN	31.955	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81160			18118	6042	14761	14782							0.10361172779653316
IGERLPIR	8	Unmodified	_IGERLPIR_					0	0	0		ENSG00000160190|ENST00000352133|SLC37A1	ENSG00000160190|ENST00000352133|SLC37A1	ENSG00000160190|ENST00000352133|SLC37A1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	477.298176	952.581799	0.84133	0.00040157	-0.76724	-0.0003662	0.074089	3.5363E-05	477.2976741790144	72.297	0.34783	69.695	69.571	69.919	-2.6023	-0.10561	-0.00042213	NaN	31.955	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19139			18119	6042	14761	14782							0.10361172779653316
IGFFVSNYI	9	Unmodified	_IGFFVSNYI_					0	0	0			REV__nc|ENSG00000111700|Q9NPD5-2|SLCO1B3	REV__nc|ENSG00000111700|Q9NPD5-2|SLCO1B3	MULTI-MSMS	OvCa99_classI_Rep5	1	530.2794189453125	2	530.279118	1058.54368	1.9848	0.0010525	-3.97	-0.0021052	-1.9852	-0.0010527	530.2769572639434	91.987	1.0523	91.987	91.582	92.635	0					69	24	4	0	0	0	0.13482	1	9940	9940		87.754	10.437	1	31505000	+		18120	28797	14762	14783	20145	20145					0.01675242074338712
IGFFVSNYI	9	Unmodified	_IGFFVSNYI_					0	0	0			REV__nc|ENSG00000111700|Q9NPD5-2|SLCO1B3	REV__nc|ENSG00000111700|Q9NPD5-2|SLCO1B3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	530.279118	1058.54368	-0.86022	-0.00045615	-6.3661	-0.0033758	-7.2263	-0.003832	530.7772904323296	94.098	0.25482	92.202	92.052	92.307	-1.8956	0.10788	-0.0025003	NaN	87.754	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7852.4	+		18121	28797	14762	14783							0.01675242074338712
IGFKSLLIFV	10	Unmodified	_IGFKSLLIFV_					0	0	0			REV__nc|ENSG00000165409|P16473|TSHR	REV__nc|ENSG00000165409|P16473|TSHR	MULTI-MSMS	OvCa9_classI_Rep2	2	568.8545532226562	2	568.857535	1135.70052	-5.375	-0.0030576	-1.5179	-0.00086345	-6.8929	-0.0039211	568.8565433281535	160.72	1.3933	160.5	160.18	161.57	-0.22696					89	27	5	0	0	0	0.7759	1	16347	16347		21.96	0	1	747650	+		18122	21086	14763	14784	20146	20146					0.13809526964632823
IGFKSLLIFV	10	Unmodified	_IGFKSLLIFV_					0	0	0			REV__nc|ENSG00000165409|P16473|TSHR	REV__nc|ENSG00000165409|P16473|TSHR	MULTI-MSMS	OvCa9_classI_Rep3	3	568.8536987304688	2	568.857535	1135.70052	-7.0364	-0.0040027	-0.036741	-2.09E-05	-7.0732	-0.0040236	568.857375140279	161.4	1.8223	160.03	159.69	161.51	-1.3692					107	37	5	0	0	0	0.71192	2	14013	14013;14067		29.15	1.9631	1	827460	+		18123	21086	14763	14784	20147;20148	20147					0.13809526964632823
IGFKSLLIFV	10	Unmodified	_IGFKSLLIFV_					0	0	0			REV__nc|ENSG00000165409|P16473|TSHR	REV__nc|ENSG00000165409|P16473|TSHR	MULTI-MSMS	OvCa9_classI_Rep4_	4	568.8538818359375	2	568.857535	1135.70052	-6.0827	-0.0034602	-1.2812	-0.00072885	-7.364	-0.0041891	568.856661515311	161.9	1.6548	160.28	159.93	161.59	-1.6239					133	43	5	0	0	0	0.7759	1	16035	16035		21.96	1.013	1	804000	+		18124	21086	14763	14784	20149	20149					0.13809526964632823
IGFNNVLNVLN	11	Unmodified	_IGFNNVLNVLN_					0	0	0		SLC7A14|p.T743Pfs*4|1|0.32|ENSG00000013293|chr3:170467144-170467145|-/CCGG|frameshift_variant;ENSG00000013293|ENST00000231706|SLC7A14	SLC7A14|p.T743Pfs*4|1|0.32|ENSG00000013293|chr3:170467144-170467145|-/CCGG|frameshift_variant	SLC7A14|p.T743Pfs*4|1|0.32|ENSG00000013293|chr3:170467144-170467145|-/CCGG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	608.8366088867188	2	608.837862	1215.66117	-3.2591	-0.0019843	1.617	0.00098452	-1.642	-0.00099973	608.8386735835178	151.65	1.4083	150.69	150.4	151.81	-0.95647					78	27	4	0	0	0	0.65947	1	12932	12932		39.253	2.8061	1	213430			18125	982	14764	14785	20150	20150					0.061967749431460106
IGFPEGLTP	9	Unmodified	_IGFPEGLTP_					0	0	0		nc|ENSG00000167548|O14686-3|KMT2D;ENSG00000167548|ENST00000301067|KMT2D;KMT2D|p.Q1023Sfs*39|1|0.1|ENSG00000167548|chr12:49050505-49050521|AGGAGTGGCGAACACTG/-|frameshift_variant	nc|ENSG00000167548|O14686-3|KMT2D	nc|ENSG00000167548|O14686-3|KMT2D	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.7508544921875	2	465.750193	929.485833	-0.081161	-3.7801E-05	3.9181	0.0018248	3.8369	0.001787	465.7514399168433	47.319	2.4038	44.246	42.876	45.279	-3.0724					87	46	3	0	0	0	0.25214	1	2522	2522		68.485	2.0554	1	2414500			18126	6802	14765	14786	20151	20151					0.01826980148905477
IGGFWETI	8	Unmodified	_IGGFWETI_					0	0	0		ENSG00000116793|ENST00000369604|PHTF1;nc|ENSG00000116793|Q9UMS5-2|PHTF1	ENSG00000116793|ENST00000369604|PHTF1	ENSG00000116793|ENST00000369604|PHTF1	MULTI-MSMS	OvCa99_classI_Rep5	1	461.7365417480469	2	461.737086	921.459619	-0.40701	-0.00018793	-4.1307	-0.0019073	-4.5377	-0.0020952	461.7351141276986	51.647	1.5796	51.647	51.248	52.828	0					101	36	5	0	0	0	0.64377	1	3983	3983		54.765	6.8491	1	16940000			18127	3210	14766	14787	20152	20152					-0.004252890225757255
IGGLSRVKL	9	Unmodified	_IGGLSRVKL_					0	0	0			REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.7752380371094	2	471.808377	941.6022	-0.00127	-5.9921E-07	0.37579	0.0001773	0.37452	0.0001767	471.80843815718725	69.279	0.82099	69.279	69.019	69.84	0					34	19	3	0	0	0	0.027438	1	6577	6577		47.96	26.257	1	540710	+		18128	16826	14767	14788	20153	20153					0.12906343439476586
IGGNVVINPGI	11	Unmodified	_IGGNVVINPGI_					0	0	0		tr|A0A7D6VS15|A0A7D6VS15_9CLOTAcetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03830PE=3SV=1	tr|A0A7D6VS15|A0A7D6VS15_9CLOTAcetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03830PE=3SV=1	tr|A0A7D6VS15|A0A7D6VS15_9CLOTAcetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03830PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	527.3056030273438	2	526.808574	1051.60259	0.33046	0.00017409	-2.2	-0.001159	-1.8696	-0.00098491	526.8075062539502	160.94	1.1563	160.94	160.35	161.51	0					55	22	3	0	0	0	0.72459	1	18830	18830		20.947	0	1	140160			18129	34975	14768	14789	20154	20154					0.07885718368675043
IGGPFIVLAPE	11	Unmodified	_IGGPFIVLAPE_					0	0	0			REV__ENST00000511217.1_1_5:145442260-145458084:+|nuORF	REV__ENST00000511217.1_1_5:145442260-145458084:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.2332153320312	2	556.82115	1111.62775	1.8483	0.0010292	-0.6321	-0.00035197	1.2162	0.00067723	556.8204664751275	148.55	0.64165	148.55	148.28	148.92	0					15	12	2	0	0	0	0.025416	1	17360	17360		51.335	1.8939	1	28739	+		18130	26957	14769	14790	20155	20155					0.07639773171217712
IGGQTRVTLR	10	Unmodified	_IGGQTRVTLR_					0	0	0		nc|ENSG00000148290|Q15526-2|SURF1;ENSG00000148290|ENST00000371974|SURF1	nc|ENSG00000148290|Q15526-2|SURF1	nc|ENSG00000148290|Q15526-2|SURF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.8306274414062	2	550.830372	1099.64619	0.62359	0.00034349	-1.0898	-0.00060028	-0.46618	-0.00025679	550.82969174874	33.221	1.3886	30.526	30.203	31.591	-2.6954					53	27	2	0	0	0	0.52439	1	871	871		51.193	11.94	1	344190			18131	5395	14770	14791	20156	20156					0.10035327865784893
IGGSHSVLLL	10	Unmodified	_IGGSHSVLLL_					0	0	0		nc|ENSG00000156869|Q6ZNA5-2|FRRS1;ENSG00000156869|ENST00000646001|FRRS1	nc|ENSG00000156869|Q6ZNA5-2|FRRS1	nc|ENSG00000156869|Q6ZNA5-2|FRRS1	MULTI-MSMS	OvCa99_classI_Rep5	1	498.30126953125	2	498.297842	994.581131	1.5824	0.0007885	4.0011	0.0019938	5.5835	0.0027823	498.29934150307986	135.13	1.1332	135.13	134.7	135.83	0					52	24	4	0	0	0	0.37918	1	15743	15743		71.296	18.359	1	403340			18132	5860	14771	14792	20157	20157					0.0836233333996006
IGGSIGCLLR	10	Unmodified	_IGGSIGCLLR_					0	0	0		ENST00000492902.2_1_10:104180789-104181110:-|nuORF	ENST00000492902.2_1_10:104180789-104181110:-|nuORF	ENST00000492902.2_1_10:104180789-104181110:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.7847595214844	2	494.784044	987.553536	-0.94196	-0.00046607	1.1407	0.00056441	0.19875	9.8337E-05	494.78547588877655	42.869	0.41935	39.861	39.748	40.168	-3.0074					11	7	2	0	0	0	0.026688	1	2044	2044		32.812	0	1	17730			18133	12730	14772	14793	20158	20158					0.0592610680805592
IGGSSSEDD	9	Unmodified	_IGGSSSEDD_					0	0	0		nc|ENSG00000117114|O95490-2|ADGRL2;nc|ENSG00000117114|O95490-5|ADGRL2;nc|ENSG00000117114|O95490|ADGRL2;nc|ENSG00000117114|O95490-7|ADGRL2;ENSG00000117114|ENST00000686636|ADGRL2;nc|ENSG00000117114|O95490-6|ADGRL2	nc|ENSG00000117114|O95490-2|ADGRL2	nc|ENSG00000117114|O95490-2|ADGRL2	MULTI-SECPEP	OvCa9_classI_Rep2	2	432.961669921875	2	433.672337	865.330121	-0.69034	-0.00029938	1.0361	0.00044934	0.34578	0.00014996	433.67396169557895	60.325	1.2112	57.555	57.032	58.243	-2.7702					31	22	2	0	0	0	0.027462	1	4447	4447		24.203	1.1603	1	18550			18134	3234	14773	14794	20159	20159					-0.10793135163180523
IGGSTVIR	8	Unmodified	_IGGSTVIR_					0	0	0			REV__tr|A0A553SM16|A0A553SM16_NIACIDJ-1/PfpIfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21660PE=4SV=1	REV__tr|A0A553SM16|A0A553SM16_NIACIDJ-1/PfpIfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21660PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	401.7458190917969	2	401.742702	801.470852	1.3706	0.00055065	3.8949	0.0015648	5.2656	0.0021154	401.74416532312443	56.8	0.7275	56.8	56.581	57.309	0					34	16	3	0	0	0	0.62934	1	4736	4736		57.811	6.4758	1	1012700	+		18135	30287	14774	14795	20160	20160					0.062175330715604105
IGGSTVIR	8	Unmodified	_IGGSTVIR_					0	0	0			REV__tr|A0A553SM16|A0A553SM16_NIACIDJ-1/PfpIfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21660PE=4SV=1	REV__tr|A0A553SM16|A0A553SM16_NIACIDJ-1/PfpIfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21660PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	401.742702	801.470852	1.3706	0.00055065	3.8949	0.0015648	5.2656	0.0021154	401.74416532312443	56.8	0.7275	56.8	56.581	57.309	0	0	0	NaN	57.811	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1012700	+		18136	30287	14774	14795							0.062175330715604105
IGGVAVAPTH	10	Unmodified	_IGGVAVAPTH_					0	0	0		ENSG00000168769|ENST00000380013|TET2	ENSG00000168769|ENST00000380013|TET2	ENSG00000168769|ENST00000380013|TET2	MULTI-SECPEP	OvCa99_classI_Rep5	1	461.7364501953125	2	461.261259	920.507966	-0.38323	-0.00017677	-0.44906	-0.00020713	-0.83229	-0.0003839	461.260962197924	51.662	0.87929	51.662	51.291	52.17	0					28	20	2	0	0	0	0.026612	1	4012	4012		37.159	0	1	454220			18137	6939	14775	14796	20161	20161					0.04453204617323081
IGGVDYWI	8	Unmodified	_IGGVDYWI_					0	0	0			REV__ENST00000487319.1_1_7:140048309-140048561:-|nuORF	REV__ENST00000487319.1_1_7:140048309-140048561:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	461.7373046875	2	461.737086	921.459619	-0.40701	-0.00018793	-4.1307	-0.0019073	-4.5377	-0.0020952	461.7351141276986	51.647	1.5796	51.647	51.248	52.828	0					101	36	5	0	0	0	0.63104	1	4044	4044		57.453	5.1535	1	16940000	+		18138	20534	14776	14797	20162	20162					-0.004252890225757255
IGGVGNATVLP	11	Unmodified	_IGGVGNATVLP_					0	0	0		tr|A0A553SR39|A0A553SR39_NIACIAnhydro-N-acetylmuramicacidkinaseOS=NialliacirculansOX=1397GN=anmKPE=3SV=1	tr|A0A553SR39|A0A553SR39_NIACIAnhydro-N-acetylmuramicacidkinaseOS=NialliacirculansOX=1397GN=anmKPE=3SV=1	tr|A0A553SR39|A0A553SR39_NIACIAnhydro-N-acetylmuramicacidkinaseOS=NialliacirculansOX=1397GN=anmKPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	499.2879638671875	2	499.287474	996.560395	-0.010404	-5.1946E-06	-0.93647	-0.00046757	-0.94688	-0.00047276	499.28693766889194	79.522	1.6653	77.812	76.789	78.454	-1.7103					98	32	4	0	0	0	0.36705	1	6685	6685		63.534	1.4264	1	810360			18139	34227	14777	14798	20163	20163					0.061977429602734446
IGGVGNATVLP	11	Unmodified	_IGGVGNATVLP_					0	0	0		tr|A0A553SR39|A0A553SR39_NIACIAnhydro-N-acetylmuramicacidkinaseOS=NialliacirculansOX=1397GN=anmKPE=3SV=1	tr|A0A553SR39|A0A553SR39_NIACIAnhydro-N-acetylmuramicacidkinaseOS=NialliacirculansOX=1397GN=anmKPE=3SV=1	tr|A0A553SR39|A0A553SR39_NIACIAnhydro-N-acetylmuramicacidkinaseOS=NialliacirculansOX=1397GN=anmKPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	499.2887878417969	2	499.287474	996.560395	0.0027377	1.3669E-06	-0.79579	-0.00039733	-0.79305	-0.00039596	499.28710705090845	79.766	2.0701	77.426	76.61	78.68	-2.3399					104	40	4	0	0	0	0.17265	1	4352	4352		83.647	6.3294	1	2058500			18140	34227	14777	14798	20164	20164					0.061977429602734446
IGHLIKPIGT	10	Unmodified	_IGHLIKPIGT_					0	0	0			REV__ENST00000510994.5_1_3:134196877-134196976:-|nuORF	REV__ENST00000510994.5_1_3:134196877-134196976:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	524.8265991210938	2	524.829309	1047.64407	-4.3888	-0.0023034	0.2202	0.00011557	-4.1686	-0.0021878	524.8292785030237	156.45	1.4045	156.23	155.89	157.3	-0.22696					98	36	4	0	0	0	0.72319	1	15935	15935		27.882	3.6795	1	556080	+		18141	26951	14778	14799	20165	20165					0.12214899127980061
IGIEIIKR	8	Unmodified	_IGIEIIKR_					0	0	0		ENSG00000144381|ENST00000388968|HSPD1	ENSG00000144381|ENST00000388968|HSPD1	ENSG00000144381|ENST00000388968|HSPD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.3105163574219	2	471.310752	940.606951	0.63501	0.00029929	-0.99591	-0.00046938	-0.36089	-0.00017009	471.31024904441927	22.362	2.2823	21.024	20.523	22.806	-1.3386					219	69	5	0	0	0	0.7549	1	388	388		24.203	0	1	1692100			18142	5147	14779	14800	20166	20166					0.13427227582246815
IGIIIFSVII	10	Unmodified	_IGIIIFSVII_					0	0	0			REV__tr|A0A7D6ZFD9|A0A7D6ZFD9_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17490PE=4SV=1	REV__tr|A0A7D6ZFD9|A0A7D6ZFD9_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17490PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	544.3619384765625	2	544.359911	1086.70527	0.80347	0.00043738	1.1955	0.00065078	1.999	0.0010882	544.3604048753967	157.41	4.9209	157.41	156.9	161.82	0					252	99	4	0	0	0	0.52321	1	18705	18705		51.335	0	1	913740	+		18143	31967	14780	14801	20167	20167					0.16538411107444517
IGILFPVIA	9	Unmodified	_IGILFPVIA_					0	0	0		tr|A0A553SRS3|A0A553SRS3_NIACINa+/H+antiportersubunitAOS=NialliacirculansOX=1397GN=CEQ21_01800PE=3SV=1	tr|A0A553SRS3|A0A553SRS3_NIACINa+/H+antiportersubunitAOS=NialliacirculansOX=1397GN=CEQ21_01800PE=3SV=1	tr|A0A553SRS3|A0A553SRS3_NIACINa+/H+antiportersubunitAOS=NialliacirculansOX=1397GN=CEQ21_01800PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	472.27642822265625	2	471.804771	941.59499	-1.6536	-0.00078019	-2.9984	-0.0014147	-4.6521	-0.0021949	471.80311796889566	85.366	1.2911	83.875	83.505	84.796	-1.4906					55	25	3	0	0	0	0.02744	1	7351	7351		39.021	1.8624	1	153440			18144	34289	14781	14802	20168	20168					0.12185610839037508
IGKAFDKKTV	10	Unmodified	_IGKAFDKKTV_					0	0	0		ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.830810546875	2	553.832049	1105.64954	0.13277	7.3535E-05	-3.4573	-0.0019148	-3.3245	-0.0018412	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.70152	1	14262	14262		30.318	3.6248	1	400120			18145	8305	14782	14803	20169	20169					0.10094577919790026
IGKAKALT	8	Unmodified	_IGKAKALT_					0	0	0		nc|ENSG00000111860|Q5SZL2-3|CEP85L;nc|ENSG00000111860|Q5SZL2-5|CEP85L;nc|ENSG00000111860|Q5SZL2-2|CEP85L;ENSG00000111860|ENST00000368491|CEP85L;nc|ENSG00000111860|Q5SZL2-4|CEP85L;ENST00000483035.5_1_6:118886676-118973579:-|nuORF	nc|ENSG00000111860|Q5SZL2-3|CEP85L	nc|ENSG00000111860|Q5SZL2-3|CEP85L	MULTI-MSMS	OvCa9_classI_Rep2	2	401.26177978515625	2	401.263271	800.511988	1.296	0.00052003	-4.2066	-0.001688	-2.9106	-0.0011679	401.26147123184654	136.26	1.7613	136.04	135.22	136.99	-0.22696					76	35	3	0	0	0	0.75661	1	13510	13510		19.36	0	1	533840			18146	2859	14783	14804	20170	20170					0.10375294111020139
IGKAPLKD	8	Unmodified	_IGKAPLKD_					0	0	0		nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-MSMS	OvCa9_classI_Rep3	3	421.25933837890625	2	421.260728	840.506903	-0.16203	-6.8257E-05	-2.9992	-0.0012634	-3.1612	-0.0013317	421.2593246005652	135.39	1.3287	134.28	133.92	135.24	-1.1076					52	26	3	0	0	0	0.75723	1	10938	10938		23.042	1.0826	1	253370			18147	859	14784	14805	20171	20171					0.08026990248413313
IGKHLKKLT	9	Unmodified	_IGKHLKKLT_					0	0	0		tr|A0A553SIM7|A0A553SIM7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15170PE=4SV=1	tr|A0A553SIM7|A0A553SIM7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15170PE=4SV=1	tr|A0A553SIM7|A0A553SIM7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15170PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	519.3447265625	2	519.345126	1036.6757	3.6258	0.001883	-3.7301	-0.0019372	-0.10433	-5.4182E-05	519.3430850479069	25.669	1.4415	22.959	22.778	24.219	-2.7097					87	37	4	0	0	0	0.56889	1	274	274		35.618	1.4457	1	632440			18148	33398	14785	14806	20172	20172					0.15882891881938122
IGKLKKRLVC	10	Unmodified	_IGKLKKRLVC_					0	0	0			REV__nc|ENSG00000168016|O15050|TRANK1	REV__nc|ENSG00000168016|O15050|TRANK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.822265625	2	579.381186	1156.74782	-1.1619	-0.00067316	4.3447	0.0025172	3.1828	0.0018441	579.3836537153554	26.568	0.29955	26.568	26.392	26.692	0					10	5	3	0	0	0	0.027363	1	697	697		16.473	0	1	43472	+		18149	21335	14786	14807	20173	20173					0.17571482963990093
IGKNVFVLA	9	Unmodified	_IGKNVFVLA_					0	0	0			REV__ENST00000447121.2_2_4:185559593-185569684:-|nuORF	REV__ENST00000447121.2_2_4:185559593-185569684:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	480.79705810546875	2	480.797478	959.580402	-0.62495	-0.00030048	0.86212	0.0004145	0.23716	0.00011403	480.7976122112674	115	2.3234	114.88	114.5	116.83	-0.11777					104	46	4	0	0	0	0.36502	1	10986	10986		55.504	9.5523	1	301760	+		18150	25909	14787	14808	20174	20174					0.0989953869089959
IGLCSAPGLLP	11	Unmodified	_IGLCSAPGLLP_					0	0	0			REV__nc|ENSG00000171130|Q8NHE4-4|ATP6V0E2	REV__nc|ENSG00000171130|Q8NHE4-4|ATP6V0E2	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.7966918945312	2	520.794078	1039.5736	0.24723	0.00012876	-3.2639	-0.0016998	-3.0166	-0.0015711	521.2952774791814	79.442	1.1493	77.102	76.61	77.759	-2.3399					51	22	4	0	0	0	0.025681	1	4368	4368		34.173	23.307	1	55614	+		18151	29002	14788	14809	20175	20175					0.05539857748021859
IGLDLLVK	8	Unmodified	_IGLDLLVK_					0	0	0		tr|A0A7D6ZHP2|A0A7D6ZHP2_9CLOT4-alpha-glucanotransferaseOS=ClostridiumintestinaleOX=36845GN=malQPE=3SV=1	tr|A0A7D6ZHP2|A0A7D6ZHP2_9CLOT4-alpha-glucanotransferaseOS=ClostridiumintestinaleOX=36845GN=malQPE=3SV=1	tr|A0A7D6ZHP2|A0A7D6ZHP2_9CLOT4-alpha-glucanotransferaseOS=ClostridiumintestinaleOX=36845GN=malQPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	435.7706298828125	2	435.786579	869.558604	-0.20034	-8.7308E-05	-0.049451	-2.155E-05	-0.2498	-0.00010886	435.78644834715635	102.2	1.1468	100.68	100.37	101.52	-1.5211					46	21	3	0	0	0	0.028476	1	7010	7010		7.1934	2.8771	1	95509			18152	35584	14789	14810	20176	20176					0.11860733942330626
IGLDLLVK	8	Unmodified	_IGLDLLVK_					0	0	0		tr|A0A7D6ZHP2|A0A7D6ZHP2_9CLOT4-alpha-glucanotransferaseOS=ClostridiumintestinaleOX=36845GN=malQPE=3SV=1	tr|A0A7D6ZHP2|A0A7D6ZHP2_9CLOT4-alpha-glucanotransferaseOS=ClostridiumintestinaleOX=36845GN=malQPE=3SV=1	tr|A0A7D6ZHP2|A0A7D6ZHP2_9CLOT4-alpha-glucanotransferaseOS=ClostridiumintestinaleOX=36845GN=malQPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	435.786579	869.558604	-0.75349	-0.00032836	0.70309	0.0003064	-0.050402	-2.1965E-05	435.7867821773392	101.31	1.2389	100.55	100.22	101.46	-0.764	-0.11229	0.00048189	NaN	7.1934	47	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88270			18153	35584	14789	14810							0.11860733942330626
IGLFVKKHRN	10	Unmodified	_IGLFVKKHRN_					0	0	0		L1MA2_dup458|chr1:227783992-227784718:-|1.1741422800325727|0.4119820528890241|1.51|429.0|10|1|sense	L1MA2_dup458|chr1:227783992-227784718:-|1.1741422800325727|0.4119820528890241|1.51|429.0|10|1|sense	L1MA2_dup458|chr1:227783992-227784718:-|1.1741422800325727|0.4119820528890241|1.51|429.0|10|1|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3695068359375	2	606.372207	1210.72986	-2.264	-0.0013728	-2.13	-0.0012916	-4.394	-0.0026644	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.78463	1	12453	12453		20.947	0.95016	1	205770			18154	14573	14790	14811	20177	20177					0.13292484033513574
IGLHVFPTF	9	Unmodified	_IGLHVFPTF_					0	0	0		DCUN1D2-TMCO3|3|fusion;DCUN1D2-TMCO3|2|fusion;ENSG00000150403|ENST00000434316|TMCO3	DCUN1D2-TMCO3|3|fusion	DCUN1D2-TMCO3|3|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	515.78955078125	2	515.789653	1029.56475	1.5072	0.0007774	0.22395	0.00011551	1.7312	0.00089291	515.7896143110424	127.73	1.1108	127.73	127.45	128.56	0					56	23	3	0	0	0	0.1595	1	14786	14786		83.287	0	1	345430			18155	715	14791	14812	20178	20178					0.051152521738458745
IGLIWGLSL	9	Unmodified	_IGLIWGLSL_					0	0	0		ENSG00000182687|ENST00000329003|GALR2	ENSG00000182687|ENST00000329003|GALR2	ENSG00000182687|ENST00000329003|GALR2	MULTI-MSMS	OvCa99_classI_Rep5	1	486.2963562011719	2	486.299853	970.585153	1.9266	0.00093691	-3.7019	-0.0018002	-1.7753	-0.00086334	486.29789298724177	87.119	0.90678	87.119	86.931	87.838	0					42	21	4	0	0	0	0.11842	1	9199	9199		92.191	0	1	3898100			18156	8018	14792	14813	20179	20179					0.09868422833653767
IGLLEKIR	8	Unmodified	_IGLLEKIR_					0	0	0			REV__tr|A0A7D6VQA3|A0A7D6VQA3_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19600PE=4SV=1	REV__tr|A0A7D6VQA3|A0A7D6VQA3_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19600PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.3104553222656	2	471.310752	940.606951	0.63501	0.00029929	-0.99591	-0.00046938	-0.36089	-0.00017009	471.31024904441927	22.362	2.2823	21.024	20.523	22.806	-1.3386					219	69	5	0	0	0	0.67745	1	368	368		47.916	7.343	1	1692100	+		18157	31309	14793	14814	20180	20180					0.13427227582235446
IGLQKAISL	9	Unmodified	_IGLQKAISL_					0	0	0			REV__ENST00000608891.1_1_6:88068830-88075111:+|nuORF	REV__ENST00000608891.1_1_6:88068830-88075111:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	471.8039855957031	2	471.80276	941.590967	2.6061	0.0012296	0.029268	1.3809E-05	2.6354	0.0012434	471.80251115542785	99.512	0.54082	99.512	99.276	99.817	0					25	12	3	0	0	0	0.12515	1	10993	10993		90.37	0	1	1731400	+		18158	23117	14794	14815	20181	20181					0.11783521345330428
IGLQNYVV	8	Unmodified	_IGLQNYVV_					0	0	0			REV__tr|A0A7D6VSE6|A0A7D6VSE6_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_05425PE=4SV=1	REV__tr|A0A7D6VSE6|A0A7D6VSE6_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_05425PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	453.2561340332031	2	453.258185	904.501818	-1.521	-0.00068941	-3.837	-0.0017391	-5.358	-0.0024286	453.2564512672788	49.418	2.5687	46.276	45.884	48.453	-3.1416					149	49	5	0	0	0	0.72922	1	2871	2871		37.028	3.5129	1	5840500	+		18159	31495	14795	14816	20182	20182					0.04574686385808491
IGLRDIDRMSF	11	Unmodified	_IGLRDIDRMSF_					0	0	0			REV__ENSG00000081181|ENST00000261783|ARG2	REV__ENSG00000081181|ENST00000261783|ARG2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	441.2408752441406	3	441.567695	1321.68126	-0.89851	-0.00039675	1.0695	0.00047227	0.17103	7.5522E-05	441.5681482241336	69.382	0.97562	65.901	65.663	66.639	-3.4812					34	19	2	0	0	0	0.026158	1	5248	5248		20.837	0	1	55182	+		18160	17067	14796	14817	20183	20183					0.03328202611442066
IGLSVSILSL	10	Unmodified	_IGLSVSILSL_					0	0	0		ENSG00000153294|ENST00000283303|ADGRF4	ENSG00000153294|ENST00000283303|ADGRF4	ENSG00000153294|ENST00000283303|ADGRF4	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.78607177734375	2	501.3157	1000.61685	3.389	0.001699	-1.9199	-0.00096249	1.4691	0.0007365	501.31458001638634	97.501	0.51361	97.501	97.267	97.78	0					18	11	2	0	0	0	0.026802	1	10738	10738		34.173	6.2903	1	534790			18161	5676	14797	14818	20184	20184					0.1165637079697035
IGLVPITGI	9	Unmodified	_IGLVPITGI_					0	0	0		tr|A0A553SUK7|A0A553SUK7_NIACIRodshape-determiningproteinRodAOS=NialliacirculansOX=1397GN=CEQ21_01370PE=4SV=1	tr|A0A553SUK7|A0A553SUK7_NIACIRodshape-determiningproteinRodAOS=NialliacirculansOX=1397GN=CEQ21_01370PE=4SV=1	tr|A0A553SUK7|A0A553SUK7_NIACIRodshape-determiningproteinRodAOS=NialliacirculansOX=1397GN=CEQ21_01370PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	441.2410583496094	2	441.786579	881.558604	-0.97148	-0.00042919	3.9389	0.0017401	2.9674	0.001311	441.7881518625586	69.802	1.7022	66.321	65.713	67.415	-3.4812					99	34	4	0	0	0	0.027462	1	5234	5234		28.254	6.5519	1	610020			18162	34618	14798	14819	20185	20185					0.11308733942325944
IGLVPITGI	9	Unmodified	_IGLVPITGI_					0	0	0		tr|A0A553SUK7|A0A553SUK7_NIACIRodshape-determiningproteinRodAOS=NialliacirculansOX=1397GN=CEQ21_01370PE=4SV=1	tr|A0A553SUK7|A0A553SUK7_NIACIRodshape-determiningproteinRodAOS=NialliacirculansOX=1397GN=CEQ21_01370PE=4SV=1	tr|A0A553SUK7|A0A553SUK7_NIACIRodshape-determiningproteinRodAOS=NialliacirculansOX=1397GN=CEQ21_01370PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	441.786579	881.558604	0.61595	0.00027212	2.4668	0.0010898	3.0828	0.0013619	441.78753183752445	68.928	1.9946	66.307	65.721	67.715	-2.6203	-0.0066906	-0.00053173	NaN	19.36	99	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	519550			18163	34618	14798	14819							0.11308733942325944
IGLYNQKKIK	10	Unmodified	_IGLYNQKKIK_					0	0	0		ENSG00000171724|ENST00000302536|VAT1L	ENSG00000171724|ENST00000302536|VAT1L	ENSG00000171724|ENST00000302536|VAT1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.23138427734375	3	402.251924	1203.73394	1.4573	0.00058622	-3.1669	-0.0012739	-1.7096	-0.00068768	402.2506715676661	32.868	0.14436	32.868	32.796	32.941	0					4	2	2	0	0	0	0.02711	1	1458	1458		63.534	5.2876	1	20957			18164	7229	14799	14820	20186	20186					0.14022528736541062
IGMGPEQCLLP	11	Unmodified	_IGMGPEQCLLP_					0	0	0			REV__ENST00000559834.1_1_15:91475209-91475362:-|nuORF	REV__ENST00000559834.1_1_15:91475209-91475362:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	579.3114624023438	2	579.288302	1156.56205	-1.2658	-0.00073325	4.2085	0.0024379	2.9427	0.0017047	579.2897383191861	99.578	0.30901	97.893	97.676	97.985	-1.685					7	5	2	0	0	0	0.025746	1	6713	6713		77.318	6.5014	1	7786.6	+		18165	27605	14800	14821	20187	20187					-0.009967073376174085
IGNFASRLL	9	Unmodified	_IGNFASRLL_					0	0	0		ENSG00000178409|ENST00000369042|BEND3	ENSG00000178409|ENST00000369042|BEND3	ENSG00000178409|ENST00000369042|BEND3	MULTI-MSMS	OvCa99_classI_Rep5	1	495.7906188964844	2	495.790184	989.565815	2.6378	0.0013078	-0.33319	-0.00016519	2.3046	0.0011426	495.79001167569163	96.274	0.37689	96.274	96.082	96.459	0					15	8	2	0	0	0	0.1804	1	10544	10544		79.713	2.866	1	600420			18166	7755	14801	14822	20188	20188					0.0706146654274562
IGPKLKDVYG	10	Unmodified	_IGPKLKDVYG_					0	0	0			REV__tr|A0A553SJG9|A0A553SJG9_NIACIPhosphatidylglycerophosphataseAOS=NialliacirculansOX=1397GN=CEQ21_16780PE=4SV=1	REV__tr|A0A553SJG9|A0A553SJG9_NIACIPhosphatidylglycerophosphataseAOS=NialliacirculansOX=1397GN=CEQ21_16780PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	545.317138671875	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.7759	1	14100	14100		21.96	3.6355	1	202430	+		18167	30006	14802	14823	20189	20189					0.08222889028479585
IGPLEVKLEI	10	Unmodified	_IGPLEVKLEI_					0	0	0			REV__ENSG00000150773|ENST00000280350|PIH1D2	REV__ENSG00000150773|ENST00000280350|PIH1D2	MULTI-MSMS	OvCa9_classI_Rep3	3	555.8411254882812	2	555.842082	1109.66961	0.44243	0.00024592	-3.1697	-0.0017618	-2.7273	-0.0015159	555.840193227491	67.597	0.94734	64.709	64.441	65.388	-2.8873					41	18	3	0	0	0	0.75313	1	2876	2876		24.519	0.31644	1	119210	+		18168	20204	14803	14824	20190	20190					0.11916328859751957
IGQILEGKV	9	Unmodified	_IGQILEGKV_					0	0	0			REV__ZNF699|p.R82G|1|0.09|ENSG00000196110|chr19:9297922-9297922|T/C|missense_variant	REV__ZNF699|p.R82G|1|0.09|ENSG00000196110|chr19:9297922-9297922|T/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.7939453125	2	478.792392	955.570232	-2.0507	-0.00098187	1.6978	0.00081288	-0.35294	-0.00016899	478.79288884116994	107.98	1.0342	106.1	105.83	106.87	-1.8785					32	20	3	0	0	0	0.35444	1	9888	9888		56.721	1.9447	1	89151	+		18169	32778	14804	14825	20191	20191					0.09066930965661868
IGQILEGKV	9	Unmodified	_IGQILEGKV_					0	0	0			REV__ZNF699|p.R82G|1|0.09|ENSG00000196110|chr19:9297922-9297922|T/C|missense_variant	REV__ZNF699|p.R82G|1|0.09|ENSG00000196110|chr19:9297922-9297922|T/C|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	478.792392	955.570232	-0.29116	-0.00013941	0.60192	0.0002882	0.31076	0.00014879	478.79237160962884	106.6	0.94341	106.29	105.98	106.92	-0.30837	0.10072	0.00031634	NaN	56.721	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79130	+		18170	32778	14804	14825							0.09066930965661868
IGQILEGKV	9	Unmodified	_IGQILEGKV_					0	0	0			REV__ZNF699|p.R82G|1|0.09|ENSG00000196110|chr19:9297922-9297922|T/C|missense_variant	REV__ZNF699|p.R82G|1|0.09|ENSG00000196110|chr19:9297922-9297922|T/C|missense_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	478.792392	955.570232	0.74961	0.00035891	-1.3547	-0.00064864	-0.60514	-0.00028973	478.7916894767459	107.44	0.87857	106.18	105.9	106.78	-1.267	-0.010477	-0.0015573	NaN	56.721	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81904	+		18171	32778	14804	14825							0.09066930965661868
IGQILEGKV	9	Unmodified	_IGQILEGKV_					0	0	0			REV__ZNF699|p.R82G|1|0.09|ENSG00000196110|chr19:9297922-9297922|T/C|missense_variant	REV__ZNF699|p.R82G|1|0.09|ENSG00000196110|chr19:9297922-9297922|T/C|missense_variant	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	478.792392	955.570232	-2.0507	-0.00098187	1.6978	0.00081288	-0.35294	-0.00016899	478.79288884116994	107.98	1.0342	106.1	105.83	106.87	-1.8785	-0.090246	0.0013657	NaN	56.721	32	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89151	+		18172	32778	14804	14825							0.09066930965661868
IGQVLKDIYS	10	Unmodified	_IGQVLKDIYS_					0	0	0			REV__nc|ENSG00000149554|O14757-2|CHEK1	REV__nc|ENSG00000149554|O14757-2|CHEK1	MULTI-MSMS	OvCa99_classI_Rep5	1	568.3211669921875	2	568.321514	1134.62847	-0.06193	-3.5196E-05	-2.1823	-0.0012402	-2.2442	-0.0012754	568.3201392238309	22.771	0.42472	22.771	22.617	23.042	0					29	9	4	0	0	0	0.28845	1	245	245		82.241	2.7895	1	496010	+		18173	15855	14805	14826	20192	20192					0.06654567820282864
IGRAALDTAIV	11	Unmodified	_IGRAALDTAIV_					0	0	0			REV__tr|A0A553SKM2|A0A553SKM2_NIACIDEAD-boxATP-dependentRNAhelicaseCshBOS=NialliacirculansOX=1397GN=cshBPE=3SV=1	REV__tr|A0A553SKM2|A0A553SKM2_NIACIDEAD-boxATP-dependentRNAhelicaseCshBOS=NialliacirculansOX=1397GN=cshBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.3272094726562	2	550.327131	1098.63971	0.71282	0.00039229	-2.7777	-0.0015287	-2.0649	-0.0011364	550.3256260191897	86.705	1.5914	84.078	83.613	85.204	-2.6269					98	31	4	0	0	0	0.41398	1	7350	7350		60.118	0	1	3279500	+		18174	30139	14806	14827	20193	20193					0.09433389914397594
IGRGPVWL	8	Unmodified	_IGRGPVWL_					0	0	0			REV__ENST00000498422.5_1_3:63824169-63825361:-|nuORF	REV__ENST00000498422.5_1_3:63824169-63825361:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	449.2691345214844	2	449.268887	896.523222	3.2258	0.0014492	-3.3606	-0.0015098	-0.13485	-6.0583E-05	449.26732371902864	112.43	2.5171	112.3	111.93	114.45	-0.12174					121	50	4	0	0	0	0.72134	1	10629	10629		39.021	0	1	1472600	+		18175	26795	14807	14828	20194	20194					0.07082116205162947
IGRGPVWL	8	Unmodified	_IGRGPVWL_					0	0	0			REV__ENST00000498422.5_1_3:63824169-63825361:-|nuORF	REV__ENST00000498422.5_1_3:63824169-63825361:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	449.2694091796875	2	449.268887	896.523222	0.9461	0.00042505	-1.0666	-0.00047918	-0.12048	-5.4127E-05	449.26835717612227	113.5	2.9115	112.42	112.15	115.06	-1.0753					133	57	4	0	0	0	0.57589	2	8332	8332;8362		69.093	14.328	1	1514000	+		18176	26795	14807	14828	20195;20196	20195					0.07082116205162947
IGRIEKIVP	9	Unmodified	_IGRIEKIVP_					0	0	0			REV__tr|A0A7D6VU02|A0A7D6VU02_9CLOTAspartateaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23540PE=3SV=1	REV__tr|A0A7D6VU02|A0A7D6VU02_9CLOTAspartateaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23540PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.2302856445312	2	512.829309	1023.64407	0.052373	2.6859E-05	-0.48179	-0.00024707	-0.42941	-0.00022022	512.8290568862388	115.87	0.54401	114.47	114.17	114.71	-1.3977					16	10	2	0	0	0	0.027462	1	10794	10794		25.45	7.1258	1	17849	+		18177	31643	14808	14829	20197	20197					0.13318899127978057
IGRIEKIVP	9	Unmodified	_IGRIEKIVP_					0	0	0			REV__tr|A0A7D6VU02|A0A7D6VU02_9CLOTAspartateaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23540PE=3SV=1	REV__tr|A0A7D6VU02|A0A7D6VU02_9CLOTAspartateaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23540PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	512.829309	1023.64407	0.11277	5.7833E-05	-0.96021	-0.00049242	-0.84743	-0.00043459	512.8287065465071	114.3	0.49298	114.18	113.91	114.4	-0.11777	-0.19874	-0.00036313	NaN	25.45	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15190	+		18178	31643	14808	14829							0.13318899127978057
IGRIEKIVP	9	Unmodified	_IGRIEKIVP_					0	0	0			REV__tr|A0A7D6VU02|A0A7D6VU02_9CLOTAspartateaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23540PE=3SV=1	REV__tr|A0A7D6VU02|A0A7D6VU02_9CLOTAspartateaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23540PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	512.829309	1023.64407	-0.17629	-9.0405E-05	-0.71171	-0.00036499	-0.888	-0.00045539	512.8289859060407	115.53	0.49338	114.49	114.31	114.8	-1.0414	0.10922	-0.00010826	NaN	25.45	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13372	+		18179	31643	14808	14829							0.13318899127978057
IGRISVVTK	9	Unmodified	_IGRISVVTK_					0	0	0			REV__ENSG00000105717|ENST00000251203|PBX4	REV__ENSG00000105717|ENST00000251203|PBX4	MULTI-MSMS	OvCa9_classI_Rep2	2	486.8132629394531	2	486.813659	971.612765	-0.51721	-0.00025178	0.25856	0.00012587	-0.25865	-0.00012592	486.8136606093423	57.145	2.3904	54.353	53.634	56.024	-2.792					128	47	4	0	0	0	0.1149	2	4065	4047;4065		93.143	7.9824	1	495540	+		18180	17754	14809	14830	20198;20199	20199					0.12582326093900065
IGRPFASSAL	10	Unmodified	_IGRPFASSAL_					0	0	0			REV__ENST00000392795.7_1_17:62006109-62006328:-|nuORF	REV__ENST00000392795.7_1_17:62006109-62006328:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	509.7876892089844	2	509.787641	1017.56073	-0.97494	-0.00049701	0.27196	0.00013864	-0.70298	-0.00035837	509.7875739236814	100.78	1.9275	99.173	98.518	100.45	-1.6053					62	37	4	0	0	0	0.45822	1	6852	6852		60.118	1.8883	1	550400	+		18181	25266	14810	14831	20200	20200					0.05265162680132107
IGRSLKRS	8	Unmodified	_IGRSLKRS_					0	0	0		ENST00000508743.1_1_17:46969858-46986323:-|nuORF	ENST00000508743.1_1_17:46969858-46986323:-|nuORF	ENST00000508743.1_1_17:46969858-46986323:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	458.787353515625	2	458.787976	915.561398	-3.9056	-0.0017918	3.5888	0.0016465	-0.31673	-0.00014531	458.7895332206503	147.83	2.1995	146.88	146.25	148.45	-0.9512					131	43	4	0	0	0	0.75723	1	12449	12449		23.042	0.0057756	1	949810			18182	12949	14811	14832	20201	20201					0.10024002119860143
IGSGMREPD	9	Unmodified	_IGSGMREPD_					0	0	0			REV__ENST00000597476.5_1_19:41285769-41292865:+|nuORF	REV__ENST00000597476.5_1_19:41285769-41292865:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.2508239746094	2	481.224017	960.43348	-0.19282	-9.2791E-05	0.1269	6.1067E-05	-0.065924	-3.1724E-05	481.2239320792345	47.508	1.0816	47.508	47.251	48.332	0					43	24	3	0	0	0	0.027447	1	3518	3518		47.657	0	1	535200	+		18183	28000	14812	14833	20202	20202					-0.0483192625636093
IGSKPLQI	8	Unmodified	_IGSKPLQI_					0	0	0		ENST00000567660.1_1_16:58150774-58163019:-|nuORF;ENST00000567092.1_1_16:58149929-58163019:-|nuORF;ENST00000562622.5_1_16:58149118-58163019:-|nuORF;ENSG00000070761|ENST00000262498|CFAP20	ENST00000567660.1_1_16:58150774-58163019:-|nuORF	ENST00000567660.1_1_16:58150774-58163019:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	428.26763916015625	2	428.268553	854.522553	-0.73394	-0.00031432	0.85228	0.000365	0.11834	5.0681E-05	428.26878401578796	74.16	2.8137	72.189	71.43	74.244	-1.9711					122	53	3	0	0	0	0.24597	2	6060	6055;6060		116.9	5.3685	1	460940			18184	1435	14813	14834	20203;20204	20204					0.08947276765479728
IGSKPLQI	8	Unmodified	_IGSKPLQI_					0	0	0		ENST00000567660.1_1_16:58150774-58163019:-|nuORF;ENST00000567092.1_1_16:58149929-58163019:-|nuORF;ENST00000562622.5_1_16:58149118-58163019:-|nuORF;ENSG00000070761|ENST00000262498|CFAP20	ENST00000567660.1_1_16:58150774-58163019:-|nuORF	ENST00000567660.1_1_16:58150774-58163019:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	428.268553	854.522553	0.56731	0.00024296	-0.7484	-0.00032052	-0.18109	-7.7556E-05	428.2681403414366	75.212	2.443	71.981	71.337	73.78	-3.2308	-0.10378	-0.00070567	NaN	116.9	118	50	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1207700			18185	1435	14813	14834							0.08947276765479728
IGSLIVLLI	9	Unmodified	_IGSLIVLLI_					0	0	0		tr|A0A7D6VTX2|A0A7D6VTX2_9CLOTYdcFfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21805PE=4SV=1	tr|A0A7D6VTX2|A0A7D6VTX2_9CLOTYdcFfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21805PE=4SV=1	tr|A0A7D6VTX2|A0A7D6VTX2_9CLOTYdcFfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21805PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	470.82672119140625	2	470.825704	939.636855	0.66106	0.00031124	-0.10183	-4.7944E-05	0.55923	0.0002633	470.82550127095874	161.06	3.0909	161.06	159.47	162.56	0					174	61	3	0	0	0	0.037679	1	18786	18786		128.82	0	1	597670			18186	35148	14814	14835	20205	20205					0.16462166527560385
IGSNAASLVAI	11	Unmodified	_IGSNAASLVAI_					0	0	0			REV__tr|A0A553SNV2|A0A553SNV2_NIACIAminoacidpermeaseOS=NialliacirculansOX=1397GN=CEQ21_25210PE=4SV=1	REV__tr|A0A553SNV2|A0A553SNV2_NIACIAminoacidpermeaseOS=NialliacirculansOX=1397GN=CEQ21_25210PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.29364013671875	2	508.292756	1014.57096	2.5125	0.0012771	-0.042767	-2.1738E-05	2.4697	0.0012553	508.292635600101	121.22	0.69473	121.22	120.97	121.66	0					32	15	3	0	0	0	0.092969	1	13940	13940		98.582	13.421	1	613070	+		18187	30459	14815	14836	20206	20206					0.06425725614712974
IGSRGQVPAQL	11	Unmodified	_IGSRGQVPAQL_					0	0	0			REV__ENST00000440082.5_1_7:30544246-30544390:-|nuORF	REV__ENST00000440082.5_1_7:30544246-30544390:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	563.319580078125	2	563.32238	1124.63021	-6.0709	-0.0034199	-0.15013	-8.4571E-05	-6.221	-0.0035044	563.322073230946	155.76	0.93549	154.68	154.4	155.34	-1.073					61	26	3	0	0	0	0.61983	1	13382	13382		42.864	2.0861	1	103840	+		18188	25829	14816	14837	20207	20207					0.07287621628893248
IGSSKTIGEIK	11	Unmodified	_IGSSKTIGEIK_					0	0	0		ENSG00000216937|ENST00000639629|CCDC7	ENSG00000216937|ENST00000639629|CCDC7	ENSG00000216937|ENST00000639629|CCDC7	MULTI-MSMS	OvCa9_classI_Rep2	2	566.8328247070312	2	566.832246	1131.64994	-0.064987	-3.6837E-05	1.0461	0.00059296	0.9811	0.00055612	566.832677521409	31.523	0.83896	28.814	28.543	29.382	-2.7097					38	16	3	0	0	0	0.7046	1	960	960		28.081	3.8787	1	67070			18189	9215	14817	14838	20208	20208					0.08937952848987152
IGTHKSLAV	9	Unmodified	_IGTHKSLAV_					0	0	0			REV__ENST00000469080.5_1_X:47092634-47106681:+|nuORF	REV__ENST00000469080.5_1_X:47092634-47106681:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.27655029296875	2	463.276909	924.539266	-1.0708	-0.00049607	0.64926	0.00030078	-0.42153	-0.00019529	463.2770923414436	93.403	1.1588	90.896	90.614	91.772	-2.5072					46	24	3	0	0	0	0.22961	2	8138	8138;8150		71.296	16.531	1	356190	+		18190	17545	14818	14839	20209;20210	20209					0.07397777651419801
IGTHKSLAV	9	Unmodified	_IGTHKSLAV_					0	0	0			REV__ENST00000469080.5_1_X:47092634-47106681:+|nuORF	REV__ENST00000469080.5_1_X:47092634-47106681:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	463.276909	924.539266	0.56911	0.00026366	-0.68297	-0.0003164	-0.11386	-5.2748E-05	463.27648370790433	92.161	1.3489	90.925	90.537	91.886	-1.2355	0.040154	-0.00081784	NaN	71.296	57	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236600	+		18191	17545	14818	14839							0.07397777651419801
IGTHKSLAV	9	Unmodified	_IGTHKSLAV_					0	0	0			REV__ENST00000469080.5_1_X:47092634-47106681:+|nuORF	REV__ENST00000469080.5_1_X:47092634-47106681:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	463.276909	924.539266	-1.4838	-0.0006874	0.65045	0.00030134	-0.83333	-0.00038606	463.27705250407473	92.796	1.1692	90.834	90.56	91.729	-1.9617	-0.051191	0.00041764	NaN	71.296	62	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	373330	+		18192	17545	14818	14839							0.07397777651419801
IGTHKSLAV	9	Unmodified	_IGTHKSLAV_					0	0	0			REV__ENST00000469080.5_1_X:47092634-47106681:+|nuORF	REV__ENST00000469080.5_1_X:47092634-47106681:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	463.276909	924.539266	-1.0708	-0.00049607	0.64926	0.00030078	-0.42153	-0.00019529	463.2770923414436	93.403	1.1588	90.896	90.614	91.772	-2.5072	0.011037	0.00041653	NaN	71.296	46	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	356190	+		18193	17545	14818	14839							0.07397777651419801
IGTPLLRPW	9	Unmodified	_IGTPLLRPW_					0	0	0			REV__LCTL|p.W241Gfs*20|1|0.09|ENSG00000188501|chr15:66558022-66558022|G/-|frameshift_variant	REV__LCTL|p.W241Gfs*20|1|0.09|ENSG00000188501|chr15:66558022-66558022|G/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.8419799804688	2	526.816202	1051.61785	-0.1417	-7.4648E-05	-4.2728	-0.002251	-4.4145	-0.0023256	526.8139018110529	64.924	0.71353	64.924	64.672	65.385	0					31	17	2	0	0	0	0.027461	1	5936	5936		58.782	19.976	1	759410	+		18194	22714	14819	14840	20211	20211					0.09410629956505545
IGTVLVPILL	10	Unmodified	_IGTVLVPILL_					0	0	0		nc|ENSG00000073150|Q96RD6-1|PANX2;ENSG00000073150|ENST00000395842|PANX2	nc|ENSG00000073150|Q96RD6-1|PANX2	nc|ENSG00000073150|Q96RD6-1|PANX2	MULTI-MSMS	OvCa9_classI_Rep3	3	519.3511962890625	2	519.352086	1036.68962	-0.61402	-0.00031889	0.42633	0.00022141	-0.1877	-9.7481E-05	519.3521262310679	135.52	2.0644	134.41	134.06	136.13	-1.1076					107	41	4	0	0	0	0.33316	1	10955	10955		76.847	2.8719	1	301720			18195	1488	14820	14841	20212	20212					0.1727412459038078
IGVAVGAIIFS	11	Unmodified	_IGVAVGAIIFS_					0	0	0			REV__ENSG00000101000|ENST00000216968|PROCR	REV__ENSG00000101000|ENST00000216968|PROCR	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.3046875	2	523.815867	1045.61718	-0.43496	-0.00022784	-3.2498	-0.0017023	-3.6847	-0.0019301	523.8139796143803	47.755	0.79189	45.045	44.489	45.281	-2.7097					36	15	4	0	0	0	0.025792	1	2947	2947		15.642	0	1	123470	+		18196	17465	14821	14842	20213	20213					0.0961979051680828
IGVGFDKIQL	10	Unmodified	_IGVGFDKIQL_					0	0	0			REV__tr|A0A553SIN4|A0A553SIN4_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_15220PE=4SV=1	REV__tr|A0A553SIN4|A0A553SIN4_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_15220PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3175659179688	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.79213	1	14343	14343		19.997	0.6368	1	202430	+		18197	29912	14822	14843	20214	20214					0.08222889028479585
IGVIKPAIWI	10	Unmodified	_IGVIKPAIWI_					0	0	0		ENSG00000139133|ENST00000266483|ALG10	ENSG00000139133|ENST00000266483|ALG10	ENSG00000139133|ENST00000266483|ALG10	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.3528442382812	2	555.357702	1108.70085	-5.7234	-0.0031785	-1.814	-0.0010074	-7.5374	-0.004186	555.3566390635189	159.36	1.8651	157.77	157.41	159.27	-1.5858					127	42	5	0	0	0	0.75594	1	15730	15730		24.203	3.2558	1	1093300			18198	4744	14823	14844	20215	20215					0.15084946684487477
IGVRVEHPQE	10	Unmodified	_IGVRVEHPQE_					0	0	0		tr|A0A7D7A3B0|A0A7D7A3B0_9CLOTFAD-dependentproteinC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20990PE=4SV=1	tr|A0A7D7A3B0|A0A7D7A3B0_9CLOTFAD-dependentproteinC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20990PE=4SV=1	tr|A0A7D7A3B0|A0A7D7A3B0_9CLOTFAD-dependentproteinC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20990PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	582.3140869140625	2	582.312012	1162.60947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.941	1	44.941	44.441	45.441	0								0	0	0	0.15538	1	3073	3073		44.377	6.5657	1				18199	36111	14824	14845	20216	20216					0.03467031249238062
IGYCRCIHL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))IGYCRCIHL_					1	0	0			REV__ENST00000361354.8_1_2:183867964-183888642:-|nuORF	REV__ENST00000361354.8_1_2:183867964-183888642:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	560.2759399414062	2	560.275529	1118.53651	0.059706	3.3452E-05	-0.80223	-0.00044947	-0.74253	-0.00041602	560.2749568783789	106.86	2.1744	105.6	105.27	107.44	-1.267					110	42	3	0	0	0	0.52083	1	7548	7548		40.573	6.4001	1	1807000	+		18200	24847	14825	14846	20217	20217					-0.018021370693986682
IGYGRLLKKME	11	Unmodified	_IGYGRLLKKME_					0	0	0			REV__ENSG00000184445|ENST00000333479|KNTC1;REV__KNTC1-FBXL12|1|fusion	REV__ENSG00000184445|ENST00000333479|KNTC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.24163818359375	3	436.588319	1306.74313	0.21343	9.3179E-05	-0.64121	-0.00027995	-0.42779	-0.00018677	436.92334286286336	21.836	0.1521	20.498	20.371	20.523	-1.3386					4	2	2	0	0	0	0.026364	1	200	200		13.508	0	1	4751	+		18201	22428;28342	14826	14847	20218	20218					0.10202554030593092
IHAARKKRQMA	11	Unmodified	_IHAARKKRQMA_					0	0	0		ENSG00000159086|ENST00000331923|PAXBP1;nc|ENSG00000159086|Q9Y5B6-2|PAXBP1;ENST00000464256.1_1_21:34132086-34144033:-|nuORF;nc|ENSG00000159086|Q9Y5B6-3|PAXBP1;nc|ENSG00000159086|Q9Y5B6-4|PAXBP1	ENSG00000159086|ENST00000331923|PAXBP1	ENSG00000159086|ENST00000331923|PAXBP1	MULTI-MSMS	OvCa9_classI_Rep3	3	437.2567138671875	3	437.259307	1308.75609	-5.2708	-0.0023047	1.264	0.00055271	-4.0067	-0.001752	437.2600785847716	155.33	1.4057	154.26	153.21	154.61	-1.073					75	32	3	0	0	0	0.7246	1	13370	13370		20.837	0.80668	1	37963			18202	5986	14827	14848	20219	20219					0.11406429933322215
IHAGPKFA	8	Unmodified	_IHAGPKFA_					0	0	0		nc|ENSG00000059573|P54886-2|ALDH18A1;ENSG00000059573|ENST00000371224|ALDH18A1	nc|ENSG00000059573|P54886-2|ALDH18A1	nc|ENSG00000059573|P54886-2|ALDH18A1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	421.23590087890625	2	420.739963	839.465373	-1.5381	-0.00064713	-3.173	-0.001335	-4.7111	-0.0019822	420.7385378828774	43.416	0.96959	40.408	40.168	41.137	-3.0074					29	18	3	0	0	0	0.028476	1	2133	2133		21.702	6.0661	1	57867			18203	1253	14828	14849	20220	20220					0.039218542797470946
IHAGPKFA	8	Unmodified	_IHAGPKFA_					0	0	0		nc|ENSG00000059573|P54886-2|ALDH18A1;ENSG00000059573|ENST00000371224|ALDH18A1	nc|ENSG00000059573|P54886-2|ALDH18A1	nc|ENSG00000059573|P54886-2|ALDH18A1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	420.739963	839.465373	0.84817	0.00035686	-5.7319	-0.0024116	-4.8837	-0.0020548	420.7376931146036	43.355	0.5453	40.645	40.361	40.906	-2.7097	0.11834	-0.0011929	NaN	21.702	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20163			18204	1253	14828	14849							0.039218542797470946
IHAPPQRPQD	10	Unmodified	_IHAPPQRPQD_					0	0	0		ENST00000565945.1_1_16:28602037-28603024:+|nuORF;ENSG00000176476|ENST00000317058|SGF29	ENST00000565945.1_1_16:28602037-28603024:+|nuORF	ENST00000565945.1_1_16:28602037-28603024:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.848388671875	2	579.804354	1157.59415	-1.1685	-0.00067752	2.2533	0.0013065	1.0847	0.00062893	580.307589210329	28.298	0.29886	28.298	28.19	28.489	0					8	5	2	0	0	0	0.027056	1	917	917		20.947	0	1	10077			18205	7612	14829	14850	20221	20221					0.021661644520236223
IHCGVYMVL	9	Unmodified	_IHCGVYMVL_					0	0	0		chr1:84814171-84857800|94|14.14|0.06|7.97|-|0|TE_info:MIR,MIR_dup7734,MIR,SINE,donor,+,84857800,84857948|LPAR3,None|1	chr1:84814171-84857800|94|14.14|0.06|7.97|-|0|TE_info:MIR,MIR_dup7734,MIR,SINE,donor,+,84857800,84857948|LPAR3,None|1	chr1:84814171-84857800|94|14.14|0.06|7.97|-|0|TE_info:MIR,MIR_dup7734,MIR,SINE,donor,+,84857800,84857948|LPAR3,None|1	MULTI-MSMS	OvCa9_classI_Rep2	2	517.76220703125	2	517.761723	1033.50889	-2.0222	-0.001047	4.1761	0.0021622	2.1538	0.0011152	517.7636071898655	145.53	1.1407	145.3	144.98	146.12	-0.22697					50	22	3	0	0	0	0.68641	1	14681	14681		21.702	1.2205	1	120880			18206	267	14830	14851	20222	20222					-0.0065204032962355996
IHDALAIG	8	Unmodified	_IHDALAIG_					0	0	0			REV__tr|A0A553SGA1|A0A553SGA1_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_10460PE=3SV=1	REV__tr|A0A553SGA1|A0A553SGA1_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_10460PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	405.2298583984375	2	405.229428	808.444303	3.1367	0.0012711	-0.41357	-0.00016759	2.7231	0.0011035	405.22911953355566	79.452	2.4118	79.452	79.16	81.572	0					133	58	3	0	0	0	0.59103	1	8269	8269		65.897	0	1	10443000	+		18207	29675	14831	14852	20223	20223					0.032418441802292364
IHDIYYVGI	9	Unmodified	_IHDIYYVGI_					0	0	0			REV__nc|ENSG00000151718|Q6AWC2-4|WWC2	REV__nc|ENSG00000151718|Q6AWC2-4|WWC2	MULTI-MSMS	OvCa99_classI_Rep5	1	546.78857421875	2	546.78985	1091.56515	0.93582	0.0005117	-2.9363	-0.0016055	-2.0005	-0.0010938	546.7881225030743	155.8	2.8358	155.8	155.12	157.96	0					140	55	3	0	0	0	0.50066	1	18284	18284		42.474	0.078325	1	297140	+		18208	20250	14832	14853	20224	20224					0.023026271030403223
IHDMNRMEL	9	Oxidation (M)	_IHDMNRM(Oxidation (M))EL_		IHDM(0.048)NRM(0.952)EL		IHDM(-13)NRM(13)EL	0	0	1		nc|ENSG00000167861|Q8IV36-2|HID1;ENSG00000167861|ENST00000425042|HID1;ENST00000528902.1_1_17:72957966-72959197:-|nuORF	nc|ENSG00000167861|Q8IV36-2|HID1	nc|ENSG00000167861|Q8IV36-2|HID1	MULTI-MSMS	OvCa99_classI_Rep5	1	587.7720947265625	2	587.770808	1173.52706	1.5171	0.0008917	0.87444	0.00051397	2.3915	0.0014057	587.7712196945814	127.28	1.0386	127.28	127.01	128.04	0					70	22	4	0	0	0	0.2077	1	14741	14741		75.043	12.936	2	1253500			18209	6844	14833	14854	20225	20225		210			-0.052759501455739155
IHDRILIKP	9	Unmodified	_IHDRILIKP_					0	0	0		tr|A0A553SGB9|A0A553SGB9_NIACICadmium-translocatingP-typeATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	tr|A0A553SGB9|A0A553SGB9_NIACICadmium-translocatingP-typeATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	tr|A0A553SGB9|A0A553SGB9_NIACICadmium-translocatingP-typeATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	552.8499755859375	2	552.848033	1103.68151	1.8528	0.0010243	-0.12154	-6.7195E-05	1.7312	0.0009571	552.8478699431734	110.26	1.5646	110.26	109.86	111.42	0					79	34	4	0	0	0	0.31747	1	12548	12548		60.972	4.2509	1	4864100			18210	33141	14834	14855	20226	20226					0.133819903936228
IHEEFEGFT	9	Unmodified	_IHEEFEGFT_					0	0	0			REV__tr|A0A553SJ12|A0A553SJ12_NIACIUvrABCsystemproteinBOS=NialliacirculansOX=1397GN=uvrBPE=3SV=1	REV__tr|A0A553SJ12|A0A553SJ12_NIACIUvrABCsystemproteinBOS=NialliacirculansOX=1397GN=uvrBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.3021240234375	2	554.750921	1107.48729	-0.25859	-0.00014345	0.58814	0.00032627	0.32955	0.00018282	554.7504439548545	48.065	1.8672	48.065	47.208	49.075	0					92	42	3	0	0	0	0.027462	1	3397	3397		33.516	8.0654	1	313860	+		18211	29954	14835	14856	20227	20227					-0.06215430552970247
IHEERLKRERE	11	Unmodified	_IHEERLKRERE_					0	0	0			REV__ENSG00000159450|ENST00000614923|TCHH	REV__ENSG00000159450|ENST00000614923|TCHH	MULTI-MSMS	OvCa9_classI_Rep2	2	498.9433288574219	3	498.942701	1493.80627	0.10419	5.1986E-05	0.91921	0.00045863	1.0234	0.00051062	498.9431829113185	80.386	6.5904	78.69	78.321	84.911	-1.6951					347	130	6	0	0	0	0.72493	1	6838	6838		16.53	3.0219	1	5429500	+		18212	20616	14836	14857	20228	20228					0.07912211072152786
IHEIAERFL	9	Unmodified	_IHEIAERFL_					0	0	0			REV__nc|ENSG00000183914|Q9P225-2|DNAH2	REV__nc|ENSG00000183914|Q9P225-2|DNAH2	MULTI-MSMS	OvCa99_classI_Rep5	1	564.320556640625	2	564.314023	1126.61349	1.4533	0.00082011	4.0439	0.002282	5.4972	0.0031021	564.3161299316579	155.86	1.9256	155.86	155.17	157.1	0					86	37	3	0	0	0	0.56889	1	18297	18297		35.618	2.8059	1	123060	+		18213	22394	14837	14858	20229	20229					0.055251207429591886
IHEKSSFPL	9	Unmodified	_IHEKSSFPL_					0	0	0			REV__ENST00000513654.5_1_4:122728758-122731165:+|nuORF	REV__ENST00000513654.5_1_4:122728758-122731165:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.80419921875	2	529.287474	1056.5604	2.1001	0.0011116	-0.0014003	-7.4114E-07	2.0987	0.0011108	529.2871994125837	77.177	0.53994	77.177	76.882	77.422	0					22	12	3	0	0	0	0.027462	1	7789	7789		27.882	1.1893	1	549310	+		18214	26978	14838	14859	20230	20230					0.03437742960295509
IHELITLF	8	Unmodified	_IHELITLF_					0	0	0			REV__tr|A0A553STB6|A0A553STB6_NIACICDIimmunityproteindomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04685PE=4SV=1	REV__tr|A0A553STB6|A0A553STB6_NIACICDIimmunityproteindomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04685PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2735595703125	2	493.289485	984.564418	0.12177	6.0068E-05	-3.6766	-0.0018136	-3.5549	-0.0017536	493.28755552423354	72.727	0.5034	72.727	72.412	72.915	0					13	12	2	0	0	0	0.028476	1	7076	7076		20.482	1.1219	1	119910	+		18215	30944	14839	14860	20231	20231					0.07151832454007945
IHFCITLLH	9	Unmodified	_IHFCITLLH_					0	0	0		PSAP-SGPL1|1|fusion;ENSG00000166224|ENST00000373202|SGPL1	PSAP-SGPL1|1|fusion	PSAP-SGPL1|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	548.8035278320312	2	548.802237	1095.58992	-0.74537	-0.00040906	2.6216	0.0014388	1.8763	0.0010297	548.8035813896732	33.752	1.1457	33.752	33.533	34.679	0					50	23	4	0	0	0	0.13154	1	1570	1570		88.643	3.7273	1	1344900			18216	6653	14840	14861	20232	20232					0.04594983704760125
IHFINGDI	8	Unmodified	_IHFINGDI_					0	0	0		tr|A0A7D6VNF1|A0A7D6VNF1_9CLOTDihydrofolatereductasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12640PE=4SV=1	tr|A0A7D6VNF1|A0A7D6VNF1_9CLOTDihydrofolatereductasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12640PE=4SV=1	tr|A0A7D6VNF1|A0A7D6VNF1_9CLOTDihydrofolatereductasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12640PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.7733459472656	2	464.747985	927.481417	0.19761	9.1838E-05	-3.0885	-0.0014354	-2.8909	-0.0013436	464.74810159796255	52.904	0.43339	52.904	52.61	53.043	0					11	9	2	0	0	0	0.028476	1	4150	4150		58.782	25.97	1	58467			18217	34699	14841	14862	20233	20233					0.014775157260146443
IHFWFLAQ	8	Unmodified	_IHFWFLAQ_					0	0	0			REV__L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|330|3|anti-sense	REV__L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|330|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.7857055664062	2	531.281995	1060.54944	-0.21021	-0.00011168	-3.3889	-0.0018005	-3.5991	-0.0019121	531.2797845944633	29.859	0.49981	29.859	29.785	30.285	0					16	9	2	0	0	0	0.028476	1	1093	1093		14.664	0	1	35886	+		18218	28563	14842	14863	20234	20234					0.02158385376651495
IHGKDIAKEFL	11	Unmodified	_IHGKDIAKEFL_					0	0	0			REV__tr|A0A7D6VN53|A0A7D6VN53_9CLOTMagnesiumtransporterCorAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16260PE=4SV=1	REV__tr|A0A7D6VN53|A0A7D6VN53_9CLOTMagnesiumtransporterCorAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16260PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	424.91168212890625	3	424.243317	1269.70812	-1.0707	-0.00045424	-2.6805	-0.0011372	-3.7512	-0.0015914	424.24335788589065	66.072	0.24182	62.587	62.423	62.665	-3.4854					5	4	2	0	0	0	0.025632	1	4777	4777		41.109	0	1	15251	+		18219	31160	14843	14864	20235	20235					0.08405634494283731
IHHHLGSVILI	11	Unmodified	_IHHHLGSVILI_					0	0	0		HIP1-STYXL1|1|fusion;nc|ENSG00000127952|Q9Y6J8-4|STYXL1;ENSG00000127952|ENST00000359697|STYXL1	HIP1-STYXL1|1|fusion	HIP1-STYXL1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8694458007812	2	619.87204	1237.72953	-3.8587	-0.0023919	-0.31006	-0.00019219	-4.1687	-0.0025841	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.72493	1	15437	15437		16.473	0.83134	1	492670			18220	3855	14844	14865	20236	20236					0.12017064313681658
IHHKLFDGK	9	Unmodified	_IHHKLFDGK_					0	0	0			REV__ENST00000248564.5_1_7:93555597-93555714:+|nuORF	REV__ENST00000248564.5_1_7:93555597-93555714:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	547.808837890625	2	547.808908	1093.60326	-0.63286	-0.00034669	0.48114	0.00026357	-0.15173	-8.3117E-05	547.8089203979869	48.592	1.4896	45.831	45.28	46.769	-2.7603					73	29	4	0	0	0	0.48324	1	3042	3042		44.117	0	1	224700	+		18221	23848	14845	14866	20237	20237					0.06020557808369631
IHIDFKEHF	9	Unmodified	_IHIDFKEHF_					0	0	0			REV__tr|A0A553SKA6|A0A553SKA6_NIACILonproteaseOS=NialliacirculansOX=1397GN=lonPE=2SV=1	REV__tr|A0A553SKA6|A0A553SKA6_NIACILonproteaseOS=NialliacirculansOX=1397GN=lonPE=2SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	593.3074340820312	2	593.306198	1184.59784	0.49046	0.00029099	-0.19326	-0.00011466	0.2972	0.00017633	593.3061589736691	67.252	0.94369	67.252	66.898	67.842	0					70	23	5	0	0	0	0.18193	1	6274	6274		79.451	5.196	1	5321600	+		18222	30101	14846	14867	20238	20238					0.012928342258874181
IHIGFKLGLSH	11	Unmodified	_IHIGFKLGLSH_					0	0	0			REV__tr|A0A553SFE0|A0A553SFE0_NIACIAlpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_08580PE=3SV=1	REV__tr|A0A553SFE0|A0A553SFE0_NIACIAlpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_08580PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	611.3540649414062	2	611.358765	1220.70298	-3.7398	-0.0022864	-0.61625	-0.00037675	-4.3561	-0.0026631	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.72466	1	15141	15141		19.997	0.89325	1	331570	+		18223	29567	14847	14868	20239	20239					0.10145375422325742
IHIGMRLM	8	Unmodified	_IHIGMRLM_					0	0	0			REV__ENST00000468439.2_1_3:132106006-132106102:+|nuORF	REV__ENST00000468439.2_1_3:132106006-132106102:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.8178405761719	2	485.769883	969.525212	0.12626	6.1332E-05	-0.5219	-0.00025352	-0.39564	-0.00019219	485.7695590575211	56.523	0.50657	53.228	53.02	53.527	-3.2944					22	9	3	0	0	0	0.028476	1	3621	3621		28.254	9.9299	1	104300	+		18224	16477	14848	14869	20240	20240					0.039230856271274206
IHIKKAIQSIT	11	Unmodified	_IHIKKAIQSIT_					0	0	0			REV__tr|A0A553SR57|A0A553SR57_NIACIMurR/RpiRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_00460PE=4SV=1	REV__tr|A0A553SR57|A0A553SR57_NIACIMurR/RpiRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_00460PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	626.3890380859375	2	626.392805	1250.77106	-5.6586	-0.0035445	-3.473	-0.0021755	-9.1316	-0.00572	626.8920656002647	163.54	1.1058	163.31	162.97	164.08	-0.22697					56	36	2	0	0	0	0.72505	1	16706	16706		14.865	4.5996	1	65883	+		18225	30694	14849	14870	20241	20241					0.15570200282309088
IHILLILTI	9	Unmodified	_IHILLILTI_					0	0	0			REV__ENSG00000184022|ENST00000642090|OR2T10	REV__ENSG00000184022|ENST00000642090|OR2T10	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.8046875	2	524.860078	1047.7056	0.85343	0.00044793	-1.2492	-0.00065568	-0.39581	-0.00020774	524.8597658957412	91.851	0.52418	90.616	90.484	91.009	-1.2355					11	9	2	0	0	0	0.027425	1	8163	8163		40.573	7.057	1	20812	+		18226	22398	14850	14871	20242	20242					0.18365830827292484
IHISPIDFH	9	Unmodified	_IHISPIDFH_					0	0	0			REV__nc|ENSG00000006740|Q17R89-3|ARHGAP44	REV__nc|ENSG00000006740|Q17R89-3|ARHGAP44	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.3330078125	2	539.787641	1077.56073	-0.71286	-0.00038479	-2.3454	-0.001266	-3.0583	-0.0016508	540.2885299698527	41.896	0.38688	41.896	41.637	42.024	0					14	8	2	0	0	0	0.027462	1	2645	2645		26.796	5.8492	1	64090	+		18227	16424	14851	14872	20243	20243					0.02505162680131434
IHKAASRGTRG	11	Unmodified	_IHKAASRGTRG_					0	0	0		ENST00000521663.1_1_8:58192902-58193274:+|nuORF	ENST00000521663.1_1_8:58192902-58193274:+|nuORF	ENST00000521663.1_1_8:58192902-58193274:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.3170166015625	2	577.33107	1152.64759	-0.71403	-0.00041223	-2.807	-0.0016206	-3.5211	-0.0020328	577.3293489425595	48.169	0.47123	48.169	47.984	48.455	0					16	10	2	0	0	0	0.025759	1	3556	3556		42.864	13.715	1	182640			18228	13128	14852	14873	20244	20244					0.07736961954537946
IHKAQKII	8	Unmodified	_IHKAQKII_					0	0	0			REV__ENSG00000042429|ENST00000251871|MED17	REV__ENSG00000042429|ENST00000251871|MED17	MULTI-MSMS	OvCa99_classI_Rep5	1	475.81317138671875	2	475.810919	949.607286	3.0933	0.0014718	-2.5309	-0.0012042	0.56238	0.00026758	475.8093369321839	89.652	0.4971	89.652	89.394	89.891	0					23	11	3	0	0	0	0.65582	1	9578	9578		52.299	2.2746	1	604750	+		18229	16639	14853	14874	20245	20245					0.1304664730209879
IHKIIFGAIRD	11	Unmodified	_IHKIIFGAIRD_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8815307617188	2	641.885147	1281.75574	-4.6434	-0.0029805	0.6524	0.00041876	-3.991	-0.0025618	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.72485	1	15795	15795		17.468	3.3309	1	543390	+		18230	22731	14854	14875	20246	20246					0.12613333485114708
IHKKIVSTL	9	Unmodified	_IHKKIVSTL_					0	0	0			REV__ENSG00000182545|ENST00000430083|RNASE10	REV__ENSG00000182545|ENST00000430083|RNASE10	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.3246459960938	2	519.837134	1037.65972	2.1166	0.0011003	-0.4668	-0.00024266	1.6498	0.00085765	519.8367649482727	99.383	0.33468	99.383	99.236	99.57	0					12	7	2	0	0	0	0.027462	1	10978	10978		21.96	1.013	1	396230	+		18231	22301	14855	14876	20247	20247					0.1423918564505584
IHKKIVSTL	9	Unmodified	_IHKKIVSTL_					0	0	0			REV__ENSG00000182545|ENST00000430083|RNASE10	REV__ENSG00000182545|ENST00000430083|RNASE10	MULTI-MATCH	OvCa9_classI_Rep2	2		2	519.837134	1037.65972	-0.60807	-0.0003161	-0.34553	-0.00017962	-0.9536	-0.00049572	519.8370611089972	100.1	0.44532	99.269	99.063	99.509	-0.83052	-0.12253	-0.00058325	NaN	15.642	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6999.4	+		18232	22301	14855	14876							0.1423918564505584
IHKKIVSTL	9	Unmodified	_IHKKIVSTL_					0	0	0			REV__ENSG00000182545|ENST00000430083|RNASE10	REV__ENSG00000182545|ENST00000430083|RNASE10	MULTI-MATCH	OvCa9_classI_Rep3	3		2	519.837134	1037.65972	-0.73642	-0.00038282	5.6563	0.0029404	4.9199	0.0025575	520.3427072158577	101.13	0.83342	99.522	99.243	100.08	-1.6053	0.13068	0.0056567	NaN	15.642	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42659	+		18233	22301	14855	14876							0.1423918564505584
IHKLAGAK	8	Unmodified	_IHKLAGAK_					0	0	0		tr|A0A7D6VRT8|A0A7D6VRT8_9CLOTDihydroxyacetonekinasesubunitDhaKOS=ClostridiumintestinaleOX=36845GN=dhaKPE=4SV=1	tr|A0A7D6VRT8|A0A7D6VRT8_9CLOTDihydroxyacetonekinasesubunitDhaKOS=ClostridiumintestinaleOX=36845GN=dhaKPE=4SV=1	tr|A0A7D6VRT8|A0A7D6VRT8_9CLOTDihydroxyacetonekinasesubunitDhaKOS=ClostridiumintestinaleOX=36845GN=dhaKPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.7513732910156	2	419.268887	836.523222	0.31391	0.00013161	0.25519	0.00010699	0.5691	0.00023861	419.2688107961482	62.169	0.38214	62.169	61.912	62.294	0					13	8	2	0	0	0	0.028476	1	5524	5524		31.955	0	1	108970			18234	34955	14856	14877	20248	20248					0.09842116205186358
IHKNLIKEFKY	11	Unmodified	_IHKNLIKEFKY_					0	0	0		ENSG00000185721|ENST00000331457|DRG1;ENST00000469673.1_1_22:31822577-31829954:+|nuORF	ENSG00000185721|ENST00000331457|DRG1	ENSG00000185721|ENST00000331457|DRG1	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.3064880371094	3	478.281883	1431.82382	0.26621	0.00012732	-3.5895	-0.0017168	-3.3233	-0.0015895	478.28009619114755	41.061	0.78743	38.351	37.897	38.684	-2.7097					19	15	2	0	0	0	0.026033	1	2074	2074		22.562	0	1	24245			18235	8275	14857	14878	20249	20249					0.12518158345119446
IHLDWSCF	8	Unmodified	_IHLDWSCF_					0	0	0			REV__ENST00000536780.6_1_15:89931796-89932703:+|nuORF	REV__ENST00000536780.6_1_15:89931796-89932703:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.81268310546875	2	510.73402	1019.45349	-0.84215	-0.00043011	2.9525	0.0015079	2.1103	0.0010778	510.7353480437809	121.38	0.79092	121.18	120.8	121.59	-0.19718					28	15	3	0	0	0	0.028476	1	11712	11712		39.021	0	1	24826	+		18236	27304	14858	14879	20250	20250					-0.055461305257381355
IHLGNPGYDE	10	Unmodified	_IHLGNPGYDE_					0	0	0			REV__VSIG8|p.D59H|1|0.04|ENSG00000243284|chr1:159858787-159858787|C/G|missense_variant	REV__VSIG8|p.D59H|1|0.04|ENSG00000243284|chr1:159858787-159858787|C/G|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	557.7651977539062	2	557.76182	1113.50909	2.2295	0.0012435	2.9978	0.0016721	5.2273	0.0029156	557.7633633340117	128.26	1.119	128.26	127.86	128.98	0					48	21	4	0	0	0	0.49558	1	14867	14867		54.776	5.2403	1	323670	+		18237	32756	14859	14880	20251	20251					-0.043126258044367205
IHLHRCALT	9	Unmodified	_IHLHRCALT_					0	0	0			REV__nc|ENSG00000082212|P23368-2|ME2	REV__nc|ENSG00000082212|P23368-2|ME2	MULTI-MSMS	OvCa9_classI_Rep3	3	532.2925415039062	2	532.295111	1062.57567	-0.85418	-0.00045468	-3.2801	-0.001746	-4.1343	-0.0022006	532.2931881393284	93.365	1.0607	91.403	91.128	92.189	-1.9617					53	20	4	0	0	0	0.46377	1	5989	5989		45.952	1.5748	1	553100	+		18238	17083	14860	14881	20252	20252					0.04688331276474855
IHLHTCQS	8	Unmodified	_IHLHTCQS_					0	0	0			REV__ENSG00000267508|ENST00000614994|ZNF285	REV__ENSG00000267508|ENST00000614994|ZNF285	MULTI-SECPEP	OvCa9_classI_Rep4_	4	469.2769775390625	2	469.729269	937.443985	-0.13469	-6.3266E-05	0.66533	0.00031252	0.53064	0.00024926	469.72949228755175	99.347	0.67119	97.021	96.847	97.518	-2.3253					15	12	2	0	0	0	0.028476	1	8841	8841		24.203	6.8378	1	25327	+		18239	23591	14861	14882	20253	20253					-0.027238988112799234
IHLHTSQS	8	Unmodified	_IHLHTSQS_					0	0	0			REV__ENST00000438300.1_1_2:133070568-133076306:+|nuORF	REV__ENST00000438300.1_1_2:133070568-133076306:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	461.7401123046875	2	461.740691	921.466829	0.48058	0.0002219	-0.22466	-0.00010374	0.25592	0.00011817	461.7403878088709	45.442	0.68779	45.442	45.202	45.89	0					28	15	3	0	0	0	0.61758	1	3145	3145		60.294	3.5729	1	1221400	+		18240	25809	14862	14883	20254	20254					0.002954435778519837
IHLIFFLLAAL	11	Unmodified	_IHLIFFLLAAL_					0	0	0			REV__ENST00000273854.7_2_4:66535877-66535994:-|nuORF	REV__ENST00000273854.7_2_4:66535877-66535994:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	424.2709045410156	3	424.268915	1269.78492	2.1849	0.00092699	0.30152	0.00012793	2.4864	0.0010549	424.26901414012116	62.593	1.0533	59.559	59.313	60.366	-3.0339					48	20	4	0	0	0	0.72538	1	2310	2310		10.587	0	1	93226	+		18241	24085	14863	14884	20255	20255					0.16081477781449394
IHLLGLRVDW	10	Unmodified	_IHLLGLRVDW_					0	0	0		nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MSMS	OvCa9_classI_Rep2	2	611.3551635742188	2	611.358765	1220.70298	-3.7398	-0.0022864	-0.61625	-0.00037675	-4.3561	-0.0026631	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.7759	1	15364	15364		21.96	1.013	1	331570			18242	6300	14864	14885	20256	20256					0.10145375422325742
IHLLKETKV	9	Unmodified	_IHLLKETKV_					0	0	0			REV__ENST00000515638.5_1_4:99806073-99806109:-|nuORF	REV__ENST00000515638.5_1_4:99806073-99806109:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.8187255859375	2	540.842416	1079.67028	0.63623	0.0003441	-0.96345	-0.00052107	-0.32722	-0.00017697	540.8416945852474	72.745	0.74339	70.258	69.934	70.677	-2.4873					26	14	2	0	0	0	0.027462	1	3468	3468		20.947	9.4359	1	18078	+		18243	27001	14865	14886	20257	20257					0.13363168299474637
IHLLLRHF	8	Unmodified	_IHLLLRHF_					0	0	0		ENST00000527483.5_1_10:127395624-127396187:-|nuORF	ENST00000527483.5_1_10:127395624-127396187:-|nuORF	ENST00000527483.5_1_10:127395624-127396187:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.762939453125	2	524.824361	1047.63417	-1.6007	-0.0008401	-2.2838	-0.0011986	-3.8846	-0.0020387	524.8234952057134	64.152	0.11969	64.152	64.051	64.17	0					4	2	2	0	0	0	0.028476	1	5818	5818		14.664	0	1	72092			18244	13236	14866	14887	20258	20258					0.1122575591327859
IHLPRDQS	8	Unmodified	_IHLPRDQS_					0	0	0		PHKA1|p.R1066Ifs*45|1|0.07|ENSG00000067177|chrX:72593150-72593151|-/ATTCGACCCAGCAATCCCATTACTAGGTA|frameshift_variant;nc|ENSG00000067177|P46020-3|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;ENSG00000067177|ENST00000373542|PHKA1	PHKA1|p.R1066Ifs*45|1|0.07|ENSG00000067177|chrX:72593150-72593151|-/ATTCGACCCAGCAATCCCATTACTAGGTA|frameshift_variant	PHKA1|p.R1066Ifs*45|1|0.07|ENSG00000067177|chrX:72593150-72593151|-/ATTCGACCCAGCAATCCCATTACTAGGTA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.7918701171875	2	483.261791	964.509028	-0.86035	-0.00041577	0.74448	0.00035978	-0.11587	-5.5996E-05	483.2621607266318	49.763	0.39352	49.763	49.55	49.944	0					14	8	3	0	0	0	0.028476	1	3754	3754		31.955	18.996	1	381350			18245	15494	14867	14888	20259	20259					0.02535418986235527
IHLRNKAAK	9	Unmodified	_IHLRNKAAK_					0	0	0			REV__ENSG00000130035|ENST00000252318|GALNT8	REV__ENSG00000130035|ENST00000252318|GALNT8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.7228393554688	2	525.830175	1049.6458	-0.83685	-0.00044004	-1.143	-0.00060104	-1.9799	-0.0010411	525.8293426173121	65.169	0.77345	61.683	61.552	62.325	-3.4854					22	15	2	0	0	0	0.027462	1	4733	4733		33.516	12.569	1	44930	+		18246	18917	14868	14889	20260	20260					0.12295952936597132
IHLRNKAAK	9	Unmodified	_IHLRNKAAK_					0	0	0			REV__ENSG00000130035|ENST00000252318|GALNT8	REV__ENSG00000130035|ENST00000252318|GALNT8	MULTI-MATCH	OvCa9_classI_Rep3	3		2	525.830175	1049.6458	0.73679	0.00038743	-0.86793	-0.00045638	-0.13114	-6.8957E-05	525.8295371508186	64.608	1.0097	61.615	61.344	62.354	-2.9933	-0.034108	1.9683E-05	NaN	25.45	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37001	+		18247	18917	14868	14889							0.12295952936597132
IHLSFQEFF	9	Unmodified	_IHLSFQEFF_					0	0	0		NLRP12|p.V730Gfs*41|1|0.13|ENSG00000142405|chr19:53807549-53807550|-/C|frameshift_variant;nc|ENSG00000142405|P59046-4|NLRP12;nc|ENSG00000142405|P59046-3|NLRP12;nc|ENSG00000142405|P59046-6|NLRP12;nc|ENSG00000142405|P59046-2|NLRP12;ENSG00000142405|ENST00000324134|NLRP12;nc|ENSG00000142405|P59046-7|NLRP12	NLRP12|p.V730Gfs*41|1|0.13|ENSG00000142405|chr19:53807549-53807550|-/C|frameshift_variant	NLRP12|p.V730Gfs*41|1|0.13|ENSG00000142405|chr19:53807549-53807550|-/C|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.3300170898438	2	584.295299	1166.57605	2.5029	0.0014625	-4.4346	-0.0025911	-1.9316	-0.0011286	584.2924105753931	96.363	0.50352	96.363	95.997	96.501	0					17	11	2	0	0	0	0.027447	1	10550	10550		66.429	3.123	1	283230			18248	4969	14869	14890	20261	20261					-0.0005797052267553227
IHLSPTGKI	9	Unmodified	_IHLSPTGKI_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3;DNAH3|p.T2544Ifs*7|1|0.16|ENSG00000158486|chr16:20985111-20985112|-/A|frameshift_variant	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	OvCa9_classI_Rep4_	4	483.29412841796875	2	483.292559	964.570566	-0.24662	-0.00011919	-0.1302	-6.2925E-05	-0.37682	-0.00018211	483.2924158875242	90.809	2.292	88.233	87.801	90.093	-2.575					88	44	3	0	0	0	0.51865	1	7881	7881		40.778	3.6191	1	998200			18249	5956	14870	14891	20262	20262					0.08686350685513844
IHLSTGLLH	9	Unmodified	_IHLSTGLLH_					0	0	0		ENST00000530908.5_1_21:37444388-37445177:+|nuORF	ENST00000530908.5_1_21:37444388-37445177:+|nuORF	ENST00000530908.5_1_21:37444388-37445177:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	495.79168701171875	2	495.790184	989.565815	1.2906	0.00063986	-0.57856	-0.00028685	0.71203	0.00035302	495.7896684076324	130.68	0.57367	130.68	130.48	131.06	0					22	11	3	0	0	0	0.50066	1	15193	15193		42.474	8.9589	1	79615			18250	13295	14871	14892	20263	20263					0.0706146654274562
IHLVFVVLAF	10	Unmodified	_IHLVFVVLAF_					0	0	0		nc|ENSG00000170088|Q8IY95-2|TMEM192;ENSG00000170088|ENST00000306480|TMEM192	nc|ENSG00000170088|Q8IY95-2|TMEM192	nc|ENSG00000170088|Q8IY95-2|TMEM192	MULTI-MSMS	OvCa99_classI_Rep5	1	579.3590087890625	2	579.357702	1156.70085	-1.065	-0.00061701	3.3624	0.001948	2.2974	0.001331	579.3595221984407	28.563	0.44862	28.563	28.39	28.838	0					21	8	4	0	0	0	0.73286	1	944	944		26.796	4.2164	1	215400			18251	7072	14872	14893	20264	20264					0.12876946684514223
IHLVGYKMH	9	Unmodified	_IHLVGYKMH_					0	0	0			REV__ENSG00000100376|ENST00000441876|FAM118A	REV__ENSG00000100376|ENST00000441876|FAM118A	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.3353881835938	2	549.299862	1096.58517	-0.17597	-9.6658E-05	2.6526	0.0014571	2.4766	0.0013604	549.3013042703822	30.905	0.49153	30.905	30.632	31.124	0					24	9	4	0	0	0	0.027462	1	1234	1234		33.516	8.9964	1	553420	+		18252	17410	14873	14894	20265	20265					0.040740995620353715
IHLVVTKAR	9	Unmodified	_IHLVVTKAR_					0	0	0			REV__ENST00000506991.1_1_4:139402677-139402851:-|nuORF	REV__ENST00000506991.1_1_4:139402677-139402851:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.2507934570312	2	518.834926	1035.6553	-0.47755	-0.00024777	0.30241	0.0001569	-0.17514	-9.087E-05	518.8350363142089	62.108	0.38428	62.108	61.869	62.253	0					18	8	3	0	0	0	0.027462	1	5508	5508		31.955	1.4512	1	410810	+		18253	15661	14874	14895	20266	20266					0.13889721222108165
IHPILSSVLP	10	Unmodified	_IHPILSSVLP_					0	0	0			REV__ENST00000498157.1_1_1:109815480-109816293:+|nuORF	REV__ENST00000498157.1_1_1:109815480-109816293:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.3272094726562	2	538.329142	1074.64373	-6.8958	-0.0037122	3.0059	0.0016182	-3.8899	-0.002094	538.3306472316852	159.34	1.4158	157.75	157.44	158.85	-1.5859					96	33	4	0	0	0	0.64063	1	15721	15721		37.159	5.6293	1	453340	+		18254	26790	14875	14896	20267	20267					0.10939479408125408
IHPSAKRYY	9	Unmodified	_IHPSAKRYY_					0	0	0			REV__ENSG00000248385|ENST00000432826|TARM1	REV__ENSG00000248385|ENST00000432826|TARM1	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.8076782226562	2	567.806365	1133.59818	-0.19913	-0.00011307	-0.26064	-0.00014799	-0.45977	-0.00026106	567.8061660850349	70.27	6.2873	66.789	66.393	72.68	-3.4812					360	129	6	0	0	0	0.29717	1	5458	5458		63.306	7.8021	1	5481200	+		18255	23484	14876	14897	20268	20268					0.03672253945751436
IHPSGKITAL	10	Unmodified	_IHPSGKITAL_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.8125610351562	2	518.811116	1035.60768	-0.9287	-0.00048182	-0.27481	-0.00014257	-1.2035	-0.00062439	518.81101868621	89.013	3.7261	86.41	85.882	89.609	-2.6027					155	73	4	0	0	0	0.47142	1	7584	7584		58.23	0	1	7911300	+		18256	22537	14877	14898	20269	20269					0.09130022231261137
IHQLGRAR	8	Unmodified	_IHQLGRAR_					0	0	0			REV__ENST00000562171.1_1_16:68119636-68160404:+|nuORF	REV__ENST00000562171.1_1_16:68119636-68160404:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	475.7863464355469	2	475.785767	949.556982	-0.029569	-1.4069E-05	2.1538	0.0010248	2.1243	0.0010107	475.78674140613987	31.394	0.83896	28.684	28.543	29.382	-2.7097					48	16	5	0	0	0	0.75241	1	966	966		25.45	1.2474	1	116230	+		18257	27644	14878	14899	20270	20270					0.08018537696943895
IHQPMIAFSL	10	Unmodified	_IHQPMIAFSL_					0	0	0			REV__ENST00000414661.1_1_2:13143779-13143995:-|nuORF	REV__ENST00000414661.1_1_2:13143779-13143995:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.3312377929688	2	578.812802	1155.61105	0.86819	0.00050252	-2.497	-0.0014453	-1.6288	-0.00094279	578.8108394302926	132.82	0.75879	132.82	132.41	133.17	0					26	15	2	0	0	0	0.026752	1	15483	15483		27.882	0	1	38496	+		18258	25523	14879	14900	20271	20271					0.039469490136525565
IHQTRPSPH	9	Unmodified	_IHQTRPSPH_					0	0	0			REV__ENSG00000112977|ENST00000230895|DAP	REV__ENSG00000112977|ENST00000230895|DAP	MULTI-MSMS	OvCa9_classI_Rep2	2	536.7857666015625	2	536.785964	1071.55738	-2.0409	-0.0010956	1.8972	0.0010184	-0.14376	-7.7167E-05	536.7868130662082	51.731	1.878	48.918	48.453	50.331	-2.8129					102	37	5	0	0	0	0.42676	1	3406	3406		49.442	3.4693	1	394970	+		18259	18129	14880	14901	20272	20272					0.02445912626126301
IHQVTKIWRK	10	Unmodified	_IHQVTKIWRK_					0	0	0		nc|ENSG00000095383|Q9BYX2-3|TBC1D2;nc|ENSG00000095383|Q9BYX2-2|TBC1D2;ENSG00000095383|ENST00000465784|TBC1D2;nc|ENSG00000095383|Q9BYX2-4|TBC1D2;nc|ENSG00000095383|Q9BYX2-6|TBC1D2;nc|ENSG00000095383|Q9BYX2-5|TBC1D2	nc|ENSG00000095383|Q9BYX2-3|TBC1D2	nc|ENSG00000095383|Q9BYX2-3|TBC1D2	MSMS	OvCa99_classI_Rep5	1	436.9341735839844	3	436.934818	1307.78262	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.592	1	30.592	30.092	31.092	0								0	0	0	0.14298	1	1189	1189		20.03	0.7678	1				18260	1927	14881	14902	20273	20273					0.14104442096277126
IHRAVMGSLD	10	Unmodified	_IHRAVMGSLD_					0	0	0		tr|A0A553SF21|A0A553SF21_NIACIThreonine--tRNAligaseOS=NialliacirculansOX=1397GN=thrSPE=3SV=1	tr|A0A553SF21|A0A553SF21_NIACIThreonine--tRNAligaseOS=NialliacirculansOX=1397GN=thrSPE=3SV=1	tr|A0A553SF21|A0A553SF21_NIACIThreonine--tRNAligaseOS=NialliacirculansOX=1397GN=thrSPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.3123779296875	2	549.789858	1097.56516	0.39675	0.00021813	-2.8461	-0.0015648	-2.4494	-0.0013466	549.7874800125184	105.6	0.39107	105.6	105.4	105.79	0					13	8	2	0	0	0	0.027422	1	11851	11851		82.241	25.519	1	260170			18261	32981	14882	14903	20274	20274					0.02028303831411904
IHRHPISI	8	Unmodified	_IHRHPISI_					0	0	0		ENST00000330817.10_1_22:50296904-50297255:-|nuORF	ENST00000330817.10_1_22:50296904-50297255:-|nuORF	ENST00000330817.10_1_22:50296904-50297255:-|nuORF	MSMS	OvCa99_classI_Rep5	1	486.79241943359375	2	486.790518	971.566484	NaN	NaN	NaN	NaN	NaN	NaN	NaN	158.57	1	158.57	158.07	159.07	0								0	0	0	0.30129	1	18584	18584		35.618	2.1027	1				18262	10437	14883	14904	20275	20275					0.07956305982474987
IHRIPFRPK	9	Unmodified	_IHRIPFRPK_					0	0	0		ENSG00000063127|ENST00000335875|SLC6A16;ENST00000454748.7_1_19:49793382-49793970:-|nuORF	ENSG00000063127|ENST00000335875|SLC6A16	ENSG00000063127|ENST00000335875|SLC6A16	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.2732543945312	2	582.361642	1162.70873	1.2996	0.00075684	3.7804	0.0022016	5.08	0.0029584	582.3615482824856	118.72	0.70948	118.72	118.44	119.15	0					27	14	3	0	0	0	0.027462	1	13641	13641		10.866	0	1	55956			18263	1284	14884	14905	20276	20276					0.13388518724650567
IHRISLETN	9	Unmodified	_IHRISLETN_					0	0	0		ENSG00000162337|ENST00000294304|LRP5;ENST00000529993.5_1_11:68171724-68216535:+|nuORF;ENST00000467672.5_1_22:25747583-25747778:-|nuORF	ENSG00000162337|ENST00000294304|LRP5	ENSG00000162337|ENST00000294304|LRP5	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.7835083007812	2	541.80128	1081.58801	-0.46935	-0.0002543	-1.5288	-0.0008283	-1.9981	-0.0010826	541.8004973792765	52.191	0.83093	52.191	51.953	52.784	0					27	18	3	0	0	0	0.027462	1	4072	4072		32.812	11.11	1	643080			18264	6169	14885	14906	20277	20277					0.0504764622055518
IHRLTGRSW	9	Unmodified	_IHRLTGRSW_					0	0	0			REV__nc|ENSG00000163629|Q12923-2|PTPN13	REV__nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-MSMS	OvCa99_classI_Rep5	1	563.3115844726562	2	563.317432	1124.62031	3.2041	0.001805	-2.5825	-0.0014548	0.62162	0.00035017	563.315824713152	96.319	0.669	96.319	96.126	96.795	0					39	15	4	0	0	0	0.27001	1	10531	10531		66.429	5.4573	1	3181400	+		18265	20865	14886	14907	20278	20278					0.06298478414191777
IHRRGNQLTQ	10	Unmodified	_IHRRGNQLTQ_					0	0	0			REV__nc|ENSG00000185024|Q92994-6|BRF1	REV__nc|ENSG00000185024|Q92994-6|BRF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	611.8273315429688	2	611.841802	1221.66905	-0.40004	-0.00024476	1.3935	0.00085263	0.9935	0.00060787	611.8426878443064	51.832	0.16531	51.832	51.747	51.912	0					5	3	2	0	0	0	0.026931	1	4037	4037		37.812	8.6415	1	155130	+		18266	22472	14887	14908	20279	20279					0.06708346983282354
IHRRKEKN	8	Unmodified	_IHRRKEKN_					0	0	0			REV__ANO1|p.I577Sfs*11|1|0.24|ENSG00000131620|chr11:70161311-70161312|-/GC|frameshift_variant	REV__ANO1|p.I577Sfs*11|1|0.24|ENSG00000131620|chr11:70161311-70161312|-/GC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.3037719726562	2	540.822881	1079.63121	-0.58942	-0.00031877	3.8746	0.0020955	3.2852	0.0017767	540.8243940532785	69.664	0.52983	69.664	69.475	70.005	0					18	12	2	0	0	0	0.028476	1	6612	6612		38.806	12.743	1	502150	+		18267	15638	14888	14909	20280	20280					0.09457880788477269
IHSDIEINV	9	Unmodified	_IHSDIEINV_					0	0	0			REV__tr|A0A7D6ZX93|A0A7D6ZX93_9CLOTAminopyrimidineaminohydrolaseOS=ClostridiumintestinaleOX=36845GN=tenAPE=3SV=1	REV__tr|A0A7D6ZX93|A0A7D6ZX93_9CLOTAminopyrimidineaminohydrolaseOS=ClostridiumintestinaleOX=36845GN=tenAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.7955322265625	2	520.274564	1038.53457	0.56567	0.0002943	3.4407	0.0017901	4.0063	0.0020844	520.276252608133	79.786	1.2279	78.091	77.241	78.469	-1.6951					30	23	2	0	0	0	0.027455	1	6738	6738		42.396	26.754	1	59389	+		18268	32322	14889	14910	20281	20281					0.016848487179913718
IHSLDGELV	9	Unmodified	_IHSLDGELV_					0	0	0			REV__ENSG00000128513|ENST00000357628|POT1	REV__ENSG00000128513|ENST00000357628|POT1	MULTI-MSMS	OvCa99_classI_Rep5	1	491.76568603515625	2	491.763832	981.513111	0.62605	0.00030787	0.9834	0.0004836	1.6095	0.00079147	491.7642832688739	81.393	1.6575	81.393	81.037	82.694	0					77	39	3	0	0	0	0.21395	1	8368	8368		73.975	13.003	1	17981000	+		18269	18855	14890	14911	20282	20282					0.021614636892991257
IHSLLTKGFIN	11	Unmodified	_IHSLLTKGFIN_					0	0	0		ENSG00000175267|ENST00000389398|VWA3A;nc|ENSG00000175267|A6NCI4-2|VWA3A;nc|ENSG00000175267|A6NCI4-3|VWA3A;nc|ENSG00000175267|A6NCI4-4|VWA3A	ENSG00000175267|ENST00000389398|VWA3A	ENSG00000175267|ENST00000389398|VWA3A	MULTI-MSMS	OvCa99_classI_Rep5	1	621.8665161132812	2	621.86388	1241.71321	1.2031	0.00074817	0.5966	0.000371	1.7997	0.0011192	621.8642146259473	109.24	2.5626	109.24	108.24	110.8	0					152	57	3	0	0	0	0.38584	1	12416	12416		61.691	0	1	1458000			18270	7531	14891	14912	20283	20283					0.10201938356908613
IHSLRRHI	8	Unmodified	_IHSLRRHI_					0	0	0		ENSG00000127364|ENST00000247881|TAS2R4	ENSG00000127364|ENST00000247881|TAS2R4	ENSG00000127364|ENST00000247881|TAS2R4	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.3159790039062	2	516.314692	1030.61483	-0.12697	-6.5557E-05	2.3977	0.001238	2.2708	0.0011724	516.3156944800825	116.08	1.1553	114.72	114.3	115.46	-1.3645					52	22	3	0	0	0	0.66992	1	10817	10817		49.442	1.5259	1	146310			18271	3829	14892	14913	20284	20284					0.10074799622361752
IHSTRAVTEA	10	Unmodified	_IHSTRAVTEA_					0	0	0		nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1;nc|ENSG00000116127|Q8TCU4-3|ALMS1;CCT7-ALMS1|1|fusion	nc|ENSG00000116127|Q8TCU4-2|ALMS1	nc|ENSG00000116127|Q8TCU4-2|ALMS1	MULTI-SECPEP	OvCa9_classI_Rep2	2	542.7211303710938	2	542.790912	1083.56727	-1.4105	-0.00076559	1.2649	0.00068655	-0.14562	-7.904E-05	542.7914435810101	49.15	0.79012	46.39	46.078	46.868	-2.7603					38	15	3	0	0	0	0.027021	1	3143	3143		21.96	0	1	141780			18272	3155	14893	14914	20285	20285					0.028830558408344586
IHSTSAEPL	9	Unmodified	_IHSTSAEPL_					0	0	0			REV__nc|ENSG00000166928|Q96JA4-2|MS4A14	REV__nc|ENSG00000166928|Q96JA4-2|MS4A14	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.2833251953125	2	477.748182	953.481811	1.5817	0.00075568	-1.4424	-0.00068912	0.13931	6.6557E-05	477.7475223943785	89.487	0.89037	88.185	87.74	88.631	-1.302					26	17	2	0	0	0	0.027462	1	7829	7829		24.203	7.4978	1	19750	+		18273	21238	14894	14915	20286	20286					0.0032089065517766358
IHTLTRLAL	9	Unmodified	_IHTLTRLAL_					0	0	0		ENST00000519029.1_1_8:67896909-67897419:-|nuORF	ENST00000519029.1_1_8:67896909-67897419:-|nuORF	ENST00000519029.1_1_8:67896909-67897419:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	519.3267211914062	2	519.326934	1036.63931	0.91528	0.00047533	-0.11424	-5.9329E-05	0.80104	0.000416	519.3263854293617	112.97	1.2349	112.84	112.62	113.86	-0.12174					63	24	3	0	0	0	0.29717	2	10721	10721;10747		63.306	2.3343	1	264040			18274	13079	14895	14916	20287;20288	20287					0.12246014985225884
IHTLTRLAL	9	Unmodified	_IHTLTRLAL_					0	0	0		ENST00000519029.1_1_8:67896909-67897419:-|nuORF	ENST00000519029.1_1_8:67896909-67897419:-|nuORF	ENST00000519029.1_1_8:67896909-67897419:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	519.3262329101562	2	519.326934	1036.63931	0.66301	0.00034432	0.14394	7.475E-05	0.80694	0.00041907	519.3265708894658	114.02	1.3609	112.96	112.68	114.04	-1.055					61	26	3	0	0	0	0.12365	3	8400	8400;8411;8431		90.777	11.064	1	324950			18275	13079	14895	14916	20289;20290;20291	20289					0.12246014985225884
IHTRMRMF	8	Unmodified	_IHTRMRMF_					0	0	0		ENSG00000102221|ENST00000614628|JADE3	ENSG00000102221|ENST00000614628|JADE3	ENSG00000102221|ENST00000614628|JADE3	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.3102416992188	2	546.283689	1090.55282	0.84512	0.00046168	-0.24417	-0.00013339	0.60095	0.00032829	546.2839539204281	132.52	0.3837	132.52	132.36	132.75	0					11	7	2	0	0	0	0.028476	1	15389	15389		57.811	19.005	1	74483			18276	2229	14896	14917	20292	20292					0.011169888873610034
IHTVGPGQAPC	11	Unmodified	_IHTVGPGQAPC_					0	0	0			REV__ENST00000470140.5_1_10:103343389-103345908:-|nuORF;REV__ENSG00000166169|ENST00000370162|POLL	REV__ENST00000470140.5_1_10:103343389-103345908:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.3330078125	2	540.268758	1078.52296	-0.66215	-0.00035774	-4.3971	-0.0023756	-5.0592	-0.0027333	540.2661175201697	41.752	0.21582	41.752	41.637	41.853	0					7	4	2	0	0	0	0.025746	1	2645	2645		32.812	6.0163	1	49653	+		18277	26255;21163	14897	14918	20293	20293					-0.013156715769810035
IHVAEEMFEVD	11	Unmodified	_IHVAEEMFEVD_					0	0	0		tr|A0A553SS26|A0A553SS26_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_02330PE=4SV=1	tr|A0A553SS26|A0A553SS26_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_02330PE=4SV=1	tr|A0A553SS26|A0A553SS26_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_02330PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	440.7676696777344	3	440.204311	1317.5911	2.6528	0.0011678	3.1065	0.0013675	5.7593	0.0025352	440.2056652447429	79.321	0.62518	79.321	79.079	79.704	0					25	15	2	0	0	0	0.025445	1	8090	8090		28.577	20.542	1	770150			18278	34324	14898	14919	20294	20294					-0.05498891507636472
IHVARKAL	8	Unmodified	_IHVARKAL_					0	0	0		ENSG00000164299|ENST00000296739|SPZ1	ENSG00000164299|ENST00000296739|SPZ1	ENSG00000164299|ENST00000296739|SPZ1	MULTI-SECPEP	OvCa9_classI_Rep2	2	453.74188232421875	2	454.295436	906.57632	-0.28515	-0.00012954	0.0038836	1.7643E-06	-0.28126	-0.00012778	454.2954124057167	62.632	0.77216	59.888	59.548	60.32	-2.7444					21	14	2	0	0	0	0.028476	1	4733	4733		28.254	5.2176	1	13309			18279	6440	14899	14920	20295	20295					0.11929493987850037
IHVGFLKPM	9	Unmodified	_IHVGFLKPM_					0	0	0			REV__tr|A0A7D6ZY69|A0A7D6ZY69_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02085PE=4SV=1	REV__tr|A0A7D6ZY69|A0A7D6ZY69_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02085PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.3246459960938	2	521.29933	1040.58411	1.9172	0.00099946	3.4909	0.0018198	5.4082	0.0028193	521.3005369669428	99.51	0.90781	99.51	99.076	99.984	0					42	21	3	0	0	0	0.027462	1	10978	10978		21.702	1.2205	1	2576600	+		18280	32360	14900	14921	20296	20296					0.0654388519310487
IHWEQFRW	8	Unmodified	_IHWEQFRW_					0	0	0		ENST00000336838.10_1_2:55646279-55646603:-|nuORF	ENST00000336838.10_1_2:55646279-55646603:-|nuORF	ENST00000336838.10_1_2:55646279-55646603:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	601.298828125	2	601.298707	1200.58286	0.69122	0.00041563	-1.0402	-0.00062549	-0.34901	-0.00020986	601.29775720328	103.34	1.0032	103.34	102.93	103.94	0					60	23	4	0	0	0	0.50674	1	11537	11537		76.847	6.0304	1	3149900			18281	10516	14901	14922	20297	20297					-0.009406128514456213
IIAASMTQNS	10	Unmodified	_IIAASMTQNS_					0	0	0			REV__tr|A0A553SF60|A0A553SF60_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08285PE=4SV=1	REV__tr|A0A553SF60|A0A553SF60_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08285PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	518.2615966796875	2	518.260599	1034.50665	1.0128	0.00052487	2.8409	0.0014723	3.8536	0.0019972	518.2618451712167	129.49	1.6325	128.38	127.94	129.57	-1.1121					68	32	4	0	0	0	0.69073	1	10220	10220		31.53	3.6476	1	413920	+		18282	29538	14902	14923	20298	20298					-0.009227975337580574
IIACAKQNIT	10	Unmodified	_IIACAKQNIT_					0	0	0		ENSG00000214087|ENST00000622299|ARL16;nc|ENSG00000214087|Q0P5N6|ARL16	ENSG00000214087|ENST00000622299|ARL16	ENSG00000214087|ENST00000622299|ARL16	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.7803955078125	2	537.802434	1073.59032	-0.41032	-0.00022067	-0.80702	-0.00043402	-1.2173	-0.00065469	537.8013850277971	41.403	0.22271	41.403	41.24	41.462	0					7	4	2	0	0	0	0.026915	1	2580	2580		27.882	13.017	1	83097			18283	9164	14903	14924	20299	20299					0.056463586339759786
IIACNEMQANA	11	Unmodified	_IIACNEMQANA_					0	0	0			REV__nc|ENSG00000173826|Q9H252-2|KCNH6	REV__nc|ENSG00000173826|Q9H252-2|KCNH6	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.8093872070312	2	589.270641	1176.52673	1.2209	0.00071947	-2.7363	-0.0016124	-1.5154	-0.00089297	589.7699586333273	143.47	0.29803	143.47	143.27	143.56	0					11	5	3	0	0	0	0.025656	1	16750	16750		32.751	3.5805	1	28740	+		18284	21803	14904	14925	20300	20300					-0.05447369865419205
IIAEARYFQ	9	Unmodified	_IIAEARYFQ_					0	0	0		tr|A0A553SU83|A0A553SU83_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_06525PE=4SV=1	tr|A0A553SU83|A0A553SU83_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_06525PE=4SV=1	tr|A0A553SU83|A0A553SU83_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_06525PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.2864379882812	2	555.800749	1109.58694	1.7485	0.00097182	-0.25485	-0.00014164	1.4937	0.00083018	555.8006628356273	107.15	0.29643	107.15	107.02	107.31	0					10	6	2	0	0	0	0.027462	1	12085	12085		35.618	1.4457	1	213960			18285	34579	14905	14926	20301	20301					0.03653431851603273
IIAEEQQRI	9	Unmodified	_IIAEEQQRI_					0	0	0		ENST00000521983.1_1_8:26484742-26500445:+|nuORF;nc|ENSG00000092964|Q16555-2|DPYSL2;nc|ENSG00000092964|Q16555|DPYSL2;ENSG00000092964|ENST00000521913|DPYSL2	ENST00000521983.1_1_8:26484742-26500445:+|nuORF	ENST00000521983.1_1_8:26484742-26500445:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	550.310791015625	2	550.308938	1098.60332	-0.53788	-0.000296	0.71881	0.00039557	0.18093	9.9569E-05	550.309251983538	61.885	0.4095	61.885	61.585	61.994	0					21	9	3	0	0	0	0.1149	1	5485	5485		93.143	12.689	1	1999000			18286	1905	14906	14927	20302	20302					0.05796513017708094
IIAFILIAF	9	Unmodified	_IIAFILIAF_					0	0	0			REV__nc|ENSG00000141837|O00555-5|CACNA1A	REV__nc|ENSG00000141837|O00555-5|CACNA1A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.8446350097656	2	510.828246	1019.64194	-1.2478	-0.00063744	0.77156	0.00039414	-0.47629	-0.0002433	510.8281429257436	124.65	0.51945	123.26	123.02	123.54	-1.3908					16	9	3	0	0	0	0.027462	1	11826	11826		21.702	0	1	39588	+		18287	28898	14907	14928	20303	20303					0.13290470390188602
IIAFMLIAF	9	Unmodified	_IIAFMLIAF_					0	0	0			REV__nc|ENSG00000198216|Q15878-2|CACNA1E	REV__nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.32275390625	2	519.806457	1037.59836	-0.015878	-8.2534E-06	-0.13623	-7.0813E-05	-0.15211	-7.9066E-05	519.8060624885638	60.253	0.94265	56.823	56.601	57.544	-3.43					36	18	3	0	0	0	0.027462	1	4054	4054		21.702	0	1	119740	+		18288	23002	14908	14929	20304	20304					0.08106537621392818
IIAGKSGFHH	10	Unmodified	_IIAGKSGFHH_					0	0	0			REV__ENST00000586523.1_1_18:43666301-43666454:-|nuORF	REV__ENST00000586523.1_1_18:43666301-43666454:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.7573852539062	2	533.793258	1065.57196	-0.93786	-0.00050062	-0.45816	-0.00024456	-1.396	-0.00074519	534.2947720396126	57.61	0.40844	54.265	54.086	54.495	-3.3449					10	7	2	0	0	0	0.026665	1	3773	3773		51.335	0	1	28036	+		18289	27866	14909	14930	20305	20305					0.04179984774305012
IIAIPTGVK	9	Unmodified	_IIAIPTGVK_					0	0	0		ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	MULTI-MSMS	OvCa9_classI_Rep3	3	456.3009033203125	2	456.299853	910.585153	-0.43659	-0.00019922	0.40882	0.00018654	-0.027775	-1.2674E-05	456.29990578700534	88.267	1.6364	86.136	85.854	87.491	-2.1309					77	32	4	0	0	0	0.22621	1	5360	5360		71.877	0.49956	1	559700			18290	8878	14910	14931	20306	20306					0.1262842283366581
IIAIPTGVK	9	Unmodified	_IIAIPTGVK_					0	0	0		ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	ENSG00000198804|ENST00000361624|MT-CO1	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.30120849609375	2	456.299853	910.585153	-1.1569	-0.00052792	1.017	0.00046406	-0.13993	-6.3852E-05	456.30018280273066	88.663	1.4396	86.06	85.781	87.221	-2.6027					66	28	4	0	0	0	0.24951	1	7573	7573		68.787	0.30212	1	484470			18291	8878	14910	14931	20307	20307					0.1262842283366581
IIAKFGQATV	10	Unmodified	_IIAKFGQATV_					0	0	0			REV__ENSG00000130584|ENST00000245663|ZBTB46	REV__ENSG00000130584|ENST00000245663|ZBTB46	MULTI-MSMS	OvCa9_classI_Rep2	2	524.3134765625	2	524.313492	1046.61243	-0.54782	-0.00028723	1.7965	0.0009419	1.2486	0.00065467	524.3144059068588	121.52	1.6813	121.32	120.8	122.48	-0.19718					79	33	4	0	0	0	0.3094	1	11734	11734		79.713	17.605	1	278140	+		18292	18954	14911	14932	20308	20308					0.09098906374038052
IIAKRHDV	8	Unmodified	_IIAKRHDV_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1;REV__ENST00000367256.9_1_6:152443573-152639413:-|nuORF	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.24005126953125	2	476.290351	950.566149	0.035326	1.6826E-05	-0.03016	-1.4365E-05	0.005166	2.4605E-06	476.29019996490365	58.511	0.65183	58.511	58.28	58.932	0					34	15	3	0	0	0	0.028476	1	4997	4997		47.916	19.661	1	4606300	+		18293	18991;24893	14912	14933	20309	20309					0.08888886262604956
IIAKVAEKFT	10	Unmodified	_IIAKVAEKFT_					0	0	0			REV__ENSG00000140297|ENST00000396065|GCNT3	REV__ENSG00000140297|ENST00000396065|GCNT3	MULTI-MSMS	OvCa9_classI_Rep2	2	560.3397216796875	2	560.342249	1118.66995	-4.5115	-0.002528	1.2493	0.00070003	-3.2622	-0.001828	560.3427660344651	160.69	1.3876	160.47	160.23	161.62	-0.22697					59	27	4	0	0	0	0.78463	1	16385	16385		20.947	1.8434	1	170910	+		18294	19661	14913	14934	20310	20310					0.11535748579603933
IIAMVDKL	8	Unmodified	_IIAMVDKL_					0	0	0		ENSG00000109452|ENST00000262992|INPP4B;ENST00000512630.5_1_4:143007384-143094853:-|nuORF	ENSG00000109452|ENST00000262992|INPP4B	ENSG00000109452|ENST00000262992|INPP4B	MULTI-MSMS	OvCa99_classI_Rep5	1	451.77276611328125	2	451.772614	901.530675	1.5279	0.00069028	-3.3875	-0.0015304	-1.8596	-0.0008401	451.7710546700829	145.37	0.39449	145.37	145.08	145.48	0					13	8	2	0	0	0	0.73938	1	16999	16999		31.955	2.1133	1	42209			18295	2712	14914	14935	20311	20311					0.07597087690589888
IIAPFIAIK	9	Unmodified	_IIAPFIAIK_					0	0	0		tr|A0A7D6ZHF2|A0A7D6ZHF2_9CLOTPotassium-transportingATPaseATP-bindingsubunitOS=ClostridiumintestinaleOX=36845GN=kdpBPE=3SV=1	tr|A0A7D6ZHF2|A0A7D6ZHF2_9CLOTPotassium-transportingATPaseATP-bindingsubunitOS=ClostridiumintestinaleOX=36845GN=kdpBPE=3SV=1	tr|A0A7D6ZHF2|A0A7D6ZHF2_9CLOTPotassium-transportingATPaseATP-bindingsubunitOS=ClostridiumintestinaleOX=36845GN=kdpBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.24090576171875	2	493.325871	984.637189	-0.9505	-0.00046891	-4.0168	-0.0019816	-4.9673	-0.0024505	493.3236831802613	120.14	0.52324	118.8	118.61	119.14	-1.3444					14	9	2	0	0	0	0.027462	1	11286	11286		25.45	4.9683	1	15755			18296	35575	14915	14936	20312	20312					0.14425586247409683
IIAPRSLKL	9	Unmodified	_IIAPRSLKL_					0	0	0			REV__CON__P06868	REV__CON__P06868	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.279296875	2	505.839677	1009.6648	0.95455	0.00048285	-1.5285	-0.00077316	-0.57392	-0.00029031	505.8387293710234	85.899	1.2865	83.253	82.945	84.231	-2.6463					58	25	3	0	0	0	0.027433	1	7234	7234		51.335	10.557	1	237120	+	+	18297	16189	14916	14937	20313	20313					0.16035489507646616
IIAQYVNSL	9	Unmodified	_IIAQYVNSL_					0	0	0			REV__tr|A0A553SSQ3|A0A553SSQ3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03570PE=4SV=1	REV__tr|A0A553SSQ3|A0A553SSQ3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03570PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.3116455078125	2	510.78985	1019.56515	-0.021357	-1.0909E-05	-0.66087	-0.00033756	-0.68222	-0.00034847	510.7893489581054	75.572	1.1101	72.633	72.255	73.365	-2.9389					37	22	2	0	0	0	0.027462	1	5945	5945		32.812	14.55	1	206620	+		18298	30863	14917	14938	20314	20314					0.056146271030456774
IIARKISKH	9	Unmodified	_IIARKISKH_					0	0	0		tr|A0A7D6W3R4|A0A7D6W3R4_9CLOTDMTfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_11115PE=3SV=1	tr|A0A7D6W3R4|A0A7D6W3R4_9CLOTDMTfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_11115PE=3SV=1	tr|A0A7D6W3R4|A0A7D6W3R4_9CLOTDMTfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_11115PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	533.347412109375	2	533.3482	1064.68185	-0.61869	-0.00032998	-0.032112	-1.7127E-05	-0.65081	-0.00034711	533.348160054999	92.553	1.6565	91.385	91.024	92.68	-1.168					102	31	5	0	0	0	0.46377	1	8266	8266		45.952	12.436	1	1110800			18299	35458	14918	14939	20315	20315					0.15209410113470767
IIAVEWLVL	9	Unmodified	_IIAVEWLVL_					0	0	0		GPRC5B|p.I238Sfs*14|1|0.09|ENSG00000167191|chr16:19872135-19872135|G/-|frameshift_variant;ENSG00000167191|ENST00000300571|GPRC5B;nc|ENSG00000167191|Q9NZH0-2|GPRC5B	GPRC5B|p.I238Sfs*14|1|0.09|ENSG00000167191|chr16:19872135-19872135|G/-|frameshift_variant	GPRC5B|p.I238Sfs*14|1|0.09|ENSG00000167191|chr16:19872135-19872135|G/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.7675170898438	2	528.328611	1054.64267	2.5331	0.0013383	-4.465	-0.002359	-1.9319	-0.0010207	528.3260998347669	90.33	0.63799	90.33	90.06	90.698	0					34	15	3	0	0	0	0.027449	1	9694	9694		60.294	21.488	1	3331900			18300	6767	14919	14940	20316	20316					0.11753265039214966
IIAVLVSAS	9	Unmodified	_IIAVLVSAS_					0	0	0		ENSG00000147378|ENST00000370350|FATE1	ENSG00000147378|ENST00000370350|FATE1	ENSG00000147378|ENST00000370350|FATE1	MULTI-MSMS	OvCa9_classI_Rep3	3	436.77484130859375	2	436.776211	871.537869	-2.6718	-0.001167	-0.40157	-0.0001754	-3.0734	-0.0013424	436.7759504548302	144.44	1.6886	143.47	143.1	144.79	-0.97299					107	33	5	0	0	0	0.65476	1	12065	12065		25.45	4.9683	1	989010			18301	5350	14920	14941	20317	20317					0.09696143562666748
IIAYKINLYL	10	Unmodified	_IIAYKINLYL_					0	0	0			REV__tr|A0A7D6ZXI8|A0A7D6ZXI8_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13445PE=4SV=1	REV__tr|A0A7D6ZXI8|A0A7D6ZXI8_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13445PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.2503967285156	3	408.584792	1222.73255	3.4647	0.0014156	-3.3514	-0.0013693	0.11327	4.628E-05	408.58341383103476	86.118	0.48032	86.118	85.87	86.35	0					20	11	2	0	0	0	0.026714	1	9065	9065		60.118	15.741	1	741150	+		18302	32333	14921	14942	20318	20318					0.1300889464780539
IICIDLKSF	9	Unmodified	_IICIDLKSF_					0	0	0		ENST00000261681.8_1_14:67800483-67800651:+|nuORF	ENST00000261681.8_1_14:67800483-67800651:+|nuORF	ENST00000261681.8_1_14:67800483-67800651:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	526.2996826171875	2	526.296453	1050.57835	0.64271	0.00033826	1.2943	0.00068118	1.937	0.0010194	526.2969302562474	157.73	0.74359	157.73	157.45	158.19	0					31	14	3	0	0	0	0.44568	1	18478	18478		47.657	1.7054	1	173330			18303	9871	14922	14943	20319	20319					0.055087418907760366
IICKLNPVL	9	Unmodified	_IICKLNPVL_					0	0	0		tr|A0A553SMV6|A0A553SMV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23155PE=4SV=1	tr|A0A553SMV6|A0A553SMV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23155PE=4SV=1	tr|A0A553SMV6|A0A553SMV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23155PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.3108825683594	2	506.814813	1011.61507	0.3958	0.00020059	-0.72254	-0.00036619	-0.32675	-0.0001656	507.3152607394159	110.7	1.4205	109.1	108.75	110.17	-1.6011					65	26	3	0	0	0	0.52083	1	10200	10200		40.573	8.6178	1	179890			18304	33875	14923	14944	20320	20320					0.1097303850734761
IICLYRPRNI	10	Unmodified	_IICLYRPRNI_					0	0	0			REV__nc|ENSG00000188107|Q5T1H1-2|EYS	REV__nc|ENSG00000188107|Q5T1H1-2|EYS	MULTI-SECPEP	OvCa99_classI_Rep5	1	630.8076782226562	2	630.8659	1259.71725	1.6027	0.0010111	-2.0542	-0.0012959	-0.45144	-0.0002848	631.366264944979	109.43	1.4721	109.43	108.97	110.45	0					41	32	2	0	0	0	0.026822	1	12470	12470		30.504	13.036	1	1878500	+		18305	29063	14924	14945	20321	20321					0.09777704578959856
IICMMGAVI	9	Carbamidomethyl (C),Oxidation (M)	_IIC(Carbamidomethyl (C))M(Oxidation (M))MGAVI_	IIC(1)MMGAVI	IICM(0.913)M(0.087)GAVI	IIC(49)MMGAVI	IICM(10)M(-10)GAVI	0	1	1			REV__nc|ENSG00000157404|P10721-2|KIT	REV__nc|ENSG00000157404|P10721-2|KIT	MULTI-MSMS	OvCa9_classI_Rep2	2	512.2542114257812	2	512.255417	1022.49628	-0.27321	-0.00013995	-3.5206	-0.0018035	-3.7938	-0.0019434	512.2534519378975	86.204	2.5698	84.714	83.85	86.42	-1.4906					152	50	4	0	0	0	0.42921	1	7477	7477		49.211	14.01	2	485620	+		18306	20519	14925	14946	20322	20322	225	479			-0.01406819784176605
IICMMGAVI	9	Carbamidomethyl (C),Oxidation (M)	_IIC(Carbamidomethyl (C))M(Oxidation (M))MGAVI_	IIC(1)MMGAVI	IICM(0.929)M(0.071)GAVI	IIC(60)MMGAVI	IICM(11)M(-11)GAVI	0	1	1			REV__nc|ENSG00000157404|P10721-2|KIT	REV__nc|ENSG00000157404|P10721-2|KIT	MULTI-MSMS	OvCa9_classI_Rep3	3	512.254638671875	2	512.255417	1022.49628	-0.86994	-0.00044563	-2.7161	-0.0013913	-3.5861	-0.001837	512.2539630058868	86.701	3.116	84.524	83.979	87.095	-2.1768					189	61	5	0	0	0	0.32242	1	5170	5170		60.404	14.452	2	2198600	+		18307	20519	14925	14946	20323	20323	225	479			-0.01406819784176605
IICNLQQLI	9	Unmodified	_IICNLQQLI_					0	0	0		ENSG00000226650|ENST00000435029|KIF4B;ENSG00000090889|ENST00000374403|KIF4A;KIF4A|p.C1088Lfs*26|1|0.31|ENSG00000090889|chrX:70417891-70417892|-/C|frameshift_variant;nc|ENSG00000090889|O95239-2|KIF4A	ENSG00000226650|ENST00000435029|KIF4B;ENSG00000090889|ENST00000374403|KIF4A;nc|ENSG00000090889|O95239-2|KIF4A	ENSG00000226650|ENST00000435029|KIF4B	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.3157958984375	2	529.307352	1056.60015	-1.7155	-0.00090802	-0.6196	-0.00032796	-2.3351	-0.001236	529.3059498171161	102.2	0.99074	101.52	100.8	101.79	-0.68459					34	19	4	0	0	0	0.027448	1	9318	9318		63.306	12.114	1	40583			18308	9272;1850;14917	14926	14947	20324	20324					0.07411546639355038
IICQLENEL	9	Unmodified	_IICQLENEL_					0	0	0			REV__nc|ENSG00000112130|O76064-3|RNF8	REV__nc|ENSG00000112130|O76064-3|RNF8	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.322021484375	2	537.778625	1073.5427	-2.3463	-0.0012618	-1.1227	-0.00060376	-3.469	-0.0018656	537.7779482131161	119.55	0.59099	119.38	119.15	119.74	-0.17137					23	11	3	0	0	0	0.027462	1	11502	11502		47.657	3.5405	1	23929	+		18309	18076	14927	14948	20325	20325					0.008866596431062135
IIDARTHQI	9	Unmodified	_IIDARTHQI_					0	0	0			REV__ENST00000419548.4_1_20:3669762-3669849:-|nuORF	REV__ENST00000419548.4_1_20:3669762-3669849:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	533.8026733398438	2	533.803823	1065.59309	-0.98027	-0.00052327	0.19368	0.00010339	-0.78659	-0.00041988	533.8040095595635	65.884	0.6244	65.884	65.625	66.25	0					38	15	3	0	0	0	0.37135	1	6065	6065		54.776	1.4249	1	4413600	+		18310	25583	14928	14949	20326	20326					0.06291950083141273
IIDDGISK	8	Unmodified	_IIDDGISK_					0	0	0		tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	430.7586975097656	2	430.739825	859.465098	-0.17362	-7.4787E-05	4.0333	0.0017373	3.8597	0.0016625	430.7418053515121	71.736	0.53209	68.28	68.074	68.607	-3.4563					15	10	2	0	0	0	0.028476	1	5517	5517		21.96	0	1	20844			18311	35116	14929	14950	20327	20327					0.029743897692583232
IIDDIVFDF	9	Unmodified	_IIDDIVFDF_					0	0	0		nc|ENSG00000163645|Q7L0X2-3|ERICH6;nc|ENSG00000163645|Q7L0X2-2|ERICH6;ENSG00000163645|ENST00000295910|ERICH6	nc|ENSG00000163645|Q7L0X2-3|ERICH6	nc|ENSG00000163645|Q7L0X2-3|ERICH6	MULTI-MSMS	OvCa99_classI_Rep5	1	548.7835693359375	2	548.78169	1095.54883	1.9742	0.0010834	1.8352	0.0010071	3.8094	0.0020905	548.7824739396441	120.3	3.6821	120.3	119.83	123.51	0					197	82	4	0	0	0	0.34496	1	13886	13886		57.811	4.4598	1	5725800			18312	6340	14930	14951	20328	20328					0.004875011462672774
IIDEDTLYE	9	Unmodified	_IIDEDTLYE_					0	0	0		ENSG00000113319|ENST00000265080|RASGRF2	ENSG00000113319|ENST00000265080|RASGRF2	ENSG00000113319|ENST00000265080|RASGRF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.3087768554688	2	555.763694	1109.51284	-0.1949	-0.00010832	2.9679	0.0016495	2.773	0.0015411	555.765574881801	39.107	0.17896	39.107	39.017	39.196	0					5	3	2	0	0	0	0.027462	1	2282	2282		29.15	12.432	1	33850			18313	2965	14931	14952	20329	20329					-0.037540008212317844
IIDENAEII	9	Unmodified	_IIDENAEII_					0	0	0		tr|A0A7D6ZXV6|A0A7D6ZXV6_9CLOTROKfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00630PE=4SV=1	tr|A0A7D6ZXV6|A0A7D6ZXV6_9CLOTROKfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00630PE=4SV=1	tr|A0A7D6ZXV6|A0A7D6ZXV6_9CLOTROKfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00630PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.2784423828125	2	515.276772	1028.53899	2.1426	0.001104	-0.080892	-4.1682E-05	2.0617	0.0010624	515.2765929433157	120.81	1.1956	120.81	120.61	121.8	0					64	26	4	0	0	0	0.1149	1	13923	13923		93.143	7.9824	1	2042800			18314	35894	14932	14953	20330	20330					0.02586313140909624
IIDEVTYSK	9	Unmodified	_IIDEVTYSK_					0	0	0			REV__tr|A0A7D6VP87|A0A7D6VP87_9CLOTLD-carboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21545PE=3SV=1	REV__tr|A0A7D6VP87|A0A7D6VP87_9CLOTLD-carboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21545PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	534.2835083007812	2	534.284597	1066.55464	-2.6253	-0.0014027	1.5083	0.00080585	-1.117	-0.00059682	534.2853249457943	142.91	1.1362	142.68	142.26	143.4	-0.22696					49	22	3	0	0	0	0.62352	1	14346	14346		29.15	2.3535	1	71580	+		18315	31234	14933	14954	20331	20331					0.02402599657943938
IIDIISTTHII	11	Unmodified	_IIDIISTTHII_					0	0	0			REV__ENST00000434856.1_1_1:120144028-120151554:+|nuORF	REV__ENST00000434856.1_1_1:120144028-120151554:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8682861328125	2	619.871371	1237.72819	-3.8587	-0.0023919	0.76872	0.00047651	-3.09	-0.0019154	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.70865	1	15357	15357		26.693	3.1702	1	492670	+		18316	25764	14934	14955	20332	20332					0.11883385434225602
IIDKEPQIQ	9	Unmodified	_IIDKEPQIQ_					0	0	0			REV__ENST00000438179.1_1_10:17619504-17619663:+|nuORF	REV__ENST00000438179.1_1_10:17619504-17619663:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	542.3088989257812	2	542.305864	1082.59717	1.2086	0.00065544	4.4798	0.0024294	5.6884	0.0030848	542.3083074406321	144.81	0.48775	144.81	144.6	145.08	0					15	9	2	0	0	0	0.40667	1	16943	16943		51.335	5.3632	1	67415	+		18317	19226	14935	14956	20333	20333					0.05917994786182135
IIDKEYYYTQ	10	Unmodified	_IIDKEYYYTQ_					0	0	0		COPS6|p.K108Q|1|0.06|ENSG00000168090|chr7:100089734-100089734|A/C|missense_variant	COPS6|p.K108Q|1|0.06|ENSG00000168090|chr7:100089734-100089734|A/C|missense_variant	COPS6|p.K108Q|1|0.06|ENSG00000168090|chr7:100089734-100089734|A/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	446.5701599121094	3	445.887088	1334.63943	-0.33026	-0.00014726	-3.7462	-0.0016704	-4.0765	-0.0018177	446.2191804362805	43.679	0.30156	43.679	43.478	43.78	0					10	6	3	0	0	0	0.027035	1	2912	2912		17.833	0	1	57289			18318	670	14936	14957	20334	20334					-0.014500745960958739
IIDPRRGTL	9	Unmodified	_IIDPRRGTL_					0	0	0		ENSG00000172725|ENST00000341356|CORO1B;ENST00000453768.6_1_11:67208484-67210099:-|nuORF;ENST00000545736.2_1_11:67208755-67208992:-|nuORF	ENSG00000172725|ENST00000341356|CORO1B	ENSG00000172725|ENST00000341356|CORO1B	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.8145141601562	2	520.81419	1039.61383	-0.95175	-0.00049568	0.13767	7.1702E-05	-0.81408	-0.00042398	520.8141895777877	79.986	1.0727	77.235	76.938	78.011	-2.7514					52	21	4	0	0	0	0.28934	1	6515	6515		64.207	8.7031	1	215430			18319	7314	14937	14958	20335	20335					0.09560540462803147
IIDPRRGTL	9	Unmodified	_IIDPRRGTL_					0	0	0		ENSG00000172725|ENST00000341356|CORO1B;ENST00000453768.6_1_11:67208484-67210099:-|nuORF;ENST00000545736.2_1_11:67208755-67208992:-|nuORF	ENSG00000172725|ENST00000341356|CORO1B	ENSG00000172725|ENST00000341356|CORO1B	MULTI-MATCH	OvCa99_classI_Rep5	1		2	520.81419	1039.61383	1.609	0.00083798	-0.6745	-0.00035129	0.93449	0.00048669	520.8144303820143	76.941	0.16169	76.941	76.841	77.002	0	-0.22686	-0.00018397	NaN	64.207	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91093			18320	7314	14937	14958							0.09560540462803147
IIDPRRGTL	9	Unmodified	_IIDPRRGTL_					0	0	0		ENSG00000172725|ENST00000341356|CORO1B;ENST00000453768.6_1_11:67208484-67210099:-|nuORF;ENST00000545736.2_1_11:67208755-67208992:-|nuORF	ENSG00000172725|ENST00000341356|CORO1B	ENSG00000172725|ENST00000341356|CORO1B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	520.81419	1039.61383	0.47768	0.00024878	-1.1847	-0.00061703	-0.70706	-0.00036825	520.8135009154167	79.067	1.1256	77.328	76.855	77.981	-1.7398	0.15983	-0.00071545	NaN	64.207	62	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119820			18321	7314	14937	14958							0.09560540462803147
IIDVDRVADG	10	Unmodified	_IIDVDRVADG_					0	0	0			REV__nc|ENSG00000196924|P21333-2|FLNA	REV__nc|ENSG00000196924|P21333-2|FLNA	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.2449340820312	2	536.785296	1071.55604	0.90013	0.00048318	-3.3066	-0.0017749	-2.4064	-0.0012917	536.783782217292	115.24	1.2334	114.19	113.5	114.74	-1.055					34	24	2	0	0	0	0.026679	1	8471	8471		82.241	31.048	1	47775	+		18322	22875	14938	14959	20336	20336					0.02312233746692982
IIDVLVGSAF	10	Unmodified	_IIDVLVGSAF_					0	0	0			REV__tr|A0A7D6ZRF4|A0A7D6ZRF4_9CLOTBranched-chainaminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12445PE=3SV=1	REV__tr|A0A7D6ZRF4|A0A7D6ZRF4_9CLOTBranched-chainaminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12445PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	517.3026733398438	2	517.30005	1032.58555	1.3924	0.00072026	-1.1092	-0.00057377	0.28318	0.00014649	517.2993851080404	138.11	0.67084	138.11	137.78	138.45	0					20	14	2	0	0	0	0.65434	1	16115	16115		35.618	2.8059	1	47812	+		18323	32158	14939	14960	20337	20337					0.07055797762859584
IIDVLVGSAF	10	Unmodified	_IIDVLVGSAF_					0	0	0			REV__tr|A0A7D6ZRF4|A0A7D6ZRF4_9CLOTBranched-chainaminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12445PE=3SV=1	REV__tr|A0A7D6ZRF4|A0A7D6ZRF4_9CLOTBranched-chainaminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12445PE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	517.30005	1032.58555	1.3924	0.00072026	-1.1092	-0.00057377	0.28318	0.00014649	517.2993851080404	138.11	0.67084	138.11	137.78	138.45	0	0	0	NaN	35.618	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47812	+		18324	32158	14939	14960							0.07055797762859584
IIEAMLKAY	9	Unmodified	_IIEAMLKAY_					0	0	0		ENSG00000138760|ENST00000264896|SCARB2	ENSG00000138760|ENST00000264896|SCARB2	ENSG00000138760|ENST00000264896|SCARB2	MULTI-MSMS	OvCa99_classI_Rep5	1	526.2987060546875	2	526.296453	1050.57835	0.64271	0.00033826	1.2943	0.00068118	1.937	0.0010194	526.2969302562474	157.73	0.74359	157.73	157.45	158.19	0					31	14	3	0	0	0	0.38529	1	18499	18499		53.351	0	1	173330			18325	4724	14940	14961	20338	20338					0.055087418907760366
IIEDGIKNL	9	Unmodified	_IIEDGIKNL_					0	0	0			REV__nc|ENSG00000154839|Q96BD8-2|SKA1	REV__nc|ENSG00000154839|Q96BD8-2|SKA1	MULTI-MSMS	OvCa99_classI_Rep5	1	507.79644775390625	2	507.795132	1013.57571	1.2695	0.00064462	0.89957	0.0004568	2.169	0.0011014	507.79540328842864	138.77	0.96269	138.77	138.4	139.37	0					49	19	4	0	0	0	0.22621	1	16186	16186		71.877	9.7701	1	389320	+		18326	20402	14941	14962	20339	20339					0.06946609757483202
IIEEAEEAP	9	Unmodified	_IIEEAEEAP_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.2778625488281	2	500.745305	999.476056	-1.3164	-0.00065918	1.4366	0.00071936	0.12019	6.0183E-05	500.74559549360885	41.671	0.51816	38.691	38.388	38.906	-2.9804					19	9	3	0	0	0	0.027456	1	1865	1865		38.806	0	1	41591			18327	9498	14942	14963	20340	20340					-0.02370252647142479
IIEEILLLEV	10	Unmodified	_IIEEILLLEV_					0	0	0		tr|A0A553SPC1|A0A553SPC1_NIACIDUF177domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26045PE=4SV=1	tr|A0A553SPC1|A0A553SPC1_NIACIDUF177domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26045PE=4SV=1	tr|A0A553SPC1|A0A553SPC1_NIACIDUF177domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26045PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	592.3021240234375	2	592.362847	1182.71114	1.4829	0.00087844	2.0569	0.0012184	3.5398	0.0020969	592.3641073605629	147.23	0.39461	147.23	147.01	147.41	0					10	7	2	0	0	0	0.026849	1	17224	17224		49.442	10.189	1	23236			18328	34026	14943	14964	20341	20341					0.1270946482841282
IIEELVAI	8	Unmodified	_IIEELVAI_					0	0	0			REV__tr|A0A7D6ZI99|A0A7D6ZI99_9CLOTMagnesiumtransporterCorAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06225PE=3SV=1	REV__tr|A0A7D6ZI99|A0A7D6ZI99_9CLOTMagnesiumtransporterCorAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06225PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	450.274169921875	2	450.276044	898.537535	-3.7498	-0.0016884	0.58642	0.00026405	-3.1634	-0.0014244	450.27623858459356	147.83	1.7988	146.88	146.5	148.3	-0.95119					100	35	5	0	0	0	0.74679	1	12468	12468		28.254	0	1	751980	+		18329	32050	14944	14965	20342	20342					0.08420723842812095
IIEEQHHKQVI	11	Unmodified	_IIEEQHHKQVI_					0	0	0			REV__ENSG00000179165|ENST00000454782|PXT1	REV__ENSG00000179165|ENST00000454782|PXT1	MULTI-MSMS	OvCa9_classI_Rep2	2	458.5899658203125	3	458.589376	1372.7463	-0.52575	-0.0002411	1.233	0.00056543	0.70721	0.00032432	458.5898478189458	54.048	2.6368	51.234	50.578	53.215	-2.8139					132	52	4	0	0	0	0.68709	1	3685	3685		34.087	0.54494	1	257930	+		18330	22108	14945	14966	20343	20343					0.07483520408936783
IIEEQSFLL	9	Unmodified	_IIEEQSFLL_					0	0	0		ENSG00000135698|ENST00000258169|MPHOSPH6	ENSG00000135698|ENST00000258169|MPHOSPH6	ENSG00000135698|ENST00000258169|MPHOSPH6	MULTI-MSMS	OvCa9_classI_Rep3	3	546.3016357421875	2	546.30279	1090.59103	-0.72597	-0.0003966	-0.0068944	-3.7664E-06	-0.73287	-0.00040037	546.3025859564939	115.39	1.5791	114.35	114.01	115.59	-1.0414					55	31	2	0	0	0	0.40667	1	8569	8569		51.335	1.8939	1	148410			18331	4403	14946	14967	20344	20344					0.04935476554669549
IIEGIKLR	8	Unmodified	_IIEGIKLR_					0	0	0			REV__tr|A0A553SUH0|A0A553SUH0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_07005PE=3SV=1	REV__tr|A0A553SUH0|A0A553SUH0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_07005PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.3105163574219	2	471.310752	940.606951	1.3289	0.00062632	-1.6854	-0.00079433	-0.35646	-0.000168	471.3099028886094	32.057	2.5601	29.362	28.732	31.293	-2.6954					224	67	4	0	0	0	0.7224	1	861	861		38.806	0.99462	1	1074400	+		18332	31076	14947	14968	20345	20345					0.13427227582235446
IIEGLLKEL	9	Unmodified	_IIEGLLKEL_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.3217163085938	2	514.323525	1026.6325	-0.3677	-0.00018911	-0.018037	-9.2766E-06	-0.38573	-0.00019839	514.3233925462217	123.57	0.78957	122.2	121.95	122.74	-1.3666					39	15	3	0	0	0	0.27001	1	11691	11691		66.429	5.4573	1	99163	+		18333	17054	14948	14969	20346	20346					0.12024657313986609
IIEGLLKEL	9	Unmodified	_IIEGLLKEL_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.323525	1026.6325	-0.29775	-0.00015314	0.043828	2.2542E-05	-0.25392	-0.0001306	514.3234104571953	122.19	0.74163	121.98	121.67	122.41	-0.21803	-0.010086	0.00062411	NaN	66.429	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80825	+		18334	17054	14948	14969							0.12024657313986609
IIEGLLKEL	9	Unmodified	_IIEGLLKEL_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	514.323525	1026.6325	1.775	0.00091292	-1.8218	-0.00093697	-0.046755	-2.4047E-05	514.3223936595772	123.21	0.77899	122.17	121.89	122.67	-1.0377	0.1861	-0.0012949	NaN	66.429	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100710	+		18335	17054	14948	14969							0.12024657313986609
IIEISDKIT	9	Unmodified	_IIEISDKIT_					0	0	0		tr|A0A7D6ZWW4|A0A7D6ZWW4_9CLOTCytosine-specificmethyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09470PE=3SV=1	tr|A0A7D6ZWW4|A0A7D6ZWW4_9CLOTCytosine-specificmethyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09470PE=3SV=1	tr|A0A7D6ZWW4|A0A7D6ZWW4_9CLOTCytosine-specificmethyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09470PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.3095092773438	2	516.30279	1030.59103	-0.70568	-0.00036434	-0.90237	-0.00046589	-1.608	-0.00083024	516.3024622271938	101.69	1.7406	99.425	98.446	100.19	-2.2665					55	34	3	0	0	0	0.027462	1	9066	9066		18.262	0	1	146770			18336	35857	14949	14970	20347	20347					0.07695476554636116
IIEKESLIF	9	Unmodified	_IIEKESLIF_					0	0	0			REV__ENST00000507668.6_1_5:79436329-79436551:-|nuORF	REV__ENST00000507668.6_1_5:79436329-79436551:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.3211059570312	2	546.320983	1090.62741	0.036943	2.0182E-05	0.017448	9.5323E-06	0.054391	2.9715E-05	546.3204746576425	141.32	3.3559	139.86	139.56	142.91	-1.4627					97	64	3	0	0	0	0.46356	1	13837	13837		45.972	6.7194	1	132850	+		18337	26901	14950	14971	20348	20348					0.0857235345135905
IIEQLRFRQS	10	Unmodified	_IIEQLRFRQS_					0	0	0		ENSG00000173653|ENST00000309657|RCE1;ENST00000533277.5_1_11:66611269-66612734:+|nuORF	ENSG00000173653|ENST00000309657|RCE1	ENSG00000173653|ENST00000309657|RCE1	MULTI-MSMS	OvCa9_classI_Rep2	2	645.3717651367188	2	645.369861	1288.72517	0.80775	0.0005213	-1.2521	-0.00080806	-0.44434	-0.00028676	645.368778967193	89.365	1.9879	87.999	87.677	89.665	-1.3659					99	39	4	0	0	0	0.6349	1	7861	7861		37.812	3.639	1	419820			18338	7402	14951	14972	20349	20349					0.09235555100076454
IIEREPLI	8	Unmodified	_IIEREPLI_					0	0	0		ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	MULTI-MSMS	OvCa9_classI_Rep4_	4	491.8001708984375	2	491.800217	981.585882	-1.7475	-0.00085943	1.401	0.00068899	-0.34656	-0.00017044	491.80078103129136	107.83	3.5166	105.95	105.59	109.11	-1.8785					134	68	3	0	0	0	0.66057	1	9929	9929		51.335	1.3109	1	2385200			18339	7915	14952	14973	20350	20350					0.09435217482700864
IIESAPLEQ	9	Unmodified	_IIESAPLEQ_					0	0	0		ENSG00000107890|ENST00000376087|ANKRD26;ENST00000473304.1_1_10:27355373-27366272:-|nuORF	ENSG00000107890|ENST00000376087|ANKRD26	ENSG00000107890|ENST00000376087|ANKRD26	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.27178955078125	2	500.27149	998.528426	0.46694	0.0002336	0.80968	0.00040506	1.2766	0.00063866	500.2717841762572	34.705	1.3021	31.917	31.449	32.751	-2.7881					52	25	3	0	0	0	0.38529	1	1042	1042		53.351	3.9099	1	73036			18340	2626	14953	14974	20351	20351					0.02910330486474777
IIESSIQAL	9	Unmodified	_IIESSIQAL_					0	0	0		tr|A0A553SH07|A0A553SH07_NIACITeichuronicacidbiosynthesisproteinTuaFOS=NialliacirculansOX=1397GN=CEQ21_11930PE=4SV=1	tr|A0A553SH07|A0A553SH07_NIACITeichuronicacidbiosynthesisproteinTuaFOS=NialliacirculansOX=1397GN=CEQ21_11930PE=4SV=1	tr|A0A553SH07|A0A553SH07_NIACITeichuronicacidbiosynthesisproteinTuaFOS=NialliacirculansOX=1397GN=CEQ21_11930PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.282470703125	2	487.281857	972.549162	-0.75313	-0.00036699	0.06037	2.9417E-05	-0.69276	-0.00033757	487.28181617652046	95.712	2.666	93.287	92.554	95.22	-2.4256					181	52	5	0	0	0	0.22961	1	8506	8506		71.296	7.9894	1	3865200			18341	33216	14954	14975	20352	20352					0.061789208661252815
IIEWCREDKV	10	Unmodified	_IIEWCREDKV_					0	0	0			REV__nc|ENSG00000106701|Q9BXM9-2|FSD1L	REV__nc|ENSG00000106701|Q9BXM9-2|FSD1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	430.2409362792969	3	430.888546	1289.64381	-0.30849	-0.00013292	-4.341	-0.0018705	-4.6495	-0.0020034	431.2196871362038	33.475	1.3647	33.475	32.796	34.161	0					38	27	2	0	0	0	0.027142	1	1460	1460		6.6596	0	1	27431	+		18342	17822	14955	14976	20353	20353					0.010571113457899628
IIFDRPLLY	9	Unmodified	_IIFDRPLLY_					0	0	0		ENSG00000175283|ENST00000372586|DOLK	ENSG00000175283|ENST00000372586|DOLK	ENSG00000175283|ENST00000372586|DOLK	MULTI-MSMS	OvCa9_classI_Rep2	2	575.3380737304688	2	575.336967	1148.65938	-0.77826	-0.00044776	0.58372	0.00033584	-0.19454	-0.00011193	575.337218057801	122.92	1.2816	122.7	122.51	123.79	-0.21803					63	25	4	0	0	0	0.16562	4	11916	11916;11922;11928;11934		82.241	19.711	1	83960			18343	7532	14956	14977	20354;20355;20356;20357	20354					0.09099765925202519
IIFDRPLLY	9	Unmodified	_IIFDRPLLY_					0	0	0		ENSG00000175283|ENST00000372586|DOLK	ENSG00000175283|ENST00000372586|DOLK	ENSG00000175283|ENST00000372586|DOLK	MULTI-MSMS	OvCa9_classI_Rep3	3	575.3391723632812	2	575.336967	1148.65938	0.78383	0.00045097	-1.071	-0.00061618	-0.28716	-0.00016522	575.3361545895035	123.83	1.8715	122.8	122.56	124.44	-1.0377					71	35	3	0	0	0	0.35694	1	9577	9577		56.434	10.482	1	140440			18344	7532	14956	14977	20358	20358					0.09099765925202519
IIFDRPLLY	9	Unmodified	_IIFDRPLLY_					0	0	0		ENSG00000175283|ENST00000372586|DOLK	ENSG00000175283|ENST00000372586|DOLK	ENSG00000175283|ENST00000372586|DOLK	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.338134765625	2	575.336967	1148.65938	-1.3003	-0.00074809	1.0838	0.00062355	-0.21646	-0.00012454	575.3374330602496	124.23	1.6426	122.84	122.52	124.16	-1.3908					71	31	4	0	0	0	0.2422	2	11773	11773;11786		69.628	17.722	1	139380			18345	7532	14956	14977	20359;20360	20359					0.09099765925202519
IIFEAVDSIQ	10	Unmodified	_IIFEAVDSIQ_					0	0	0		tr|A0A7D6VUE0|A0A7D6VUE0_9CLOTTransketolasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11230PE=4SV=1	tr|A0A7D6VUE0|A0A7D6VUE0_9CLOTTransketolasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11230PE=4SV=1	tr|A0A7D6VUE0|A0A7D6VUE0_9CLOTTransketolasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11230PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	568.308837890625	2	567.805697	1133.59684	-1.3765	-0.00078159	1.4664	0.00083261	0.089861	5.1024E-05	568.3093196846492	107.63	1.3333	105.75	105.33	106.66	-1.8785					38	26	2	0	0	0	0.72319	1	9820	9820		27.882	1.1893	1	208820			18346	35179	14957	14978	20361	20361					0.035385750663408544
IIFETPLRV	9	Unmodified	_IIFETPLRV_					0	0	0		ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	MSMS	OvCa99_classI_Rep5	1	544.33154296875	2	544.329142	1086.64373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.78	1	117.78	117.28	118.28	0								0	0	0	0.043559	1	13495	13495		79.451	13.022	1				18347	3048	14958	14979	20362	20362					0.10387479408132094
IIFETPLRV	9	Unmodified	_IIFETPLRV_					0	0	0		ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;ENST00000460829.5_1_3:184046782-184052693:+|nuORF	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	MSMS	OvCa99_classI_Rep5	1	544.33203125	2	544.329142	1086.64373	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.97	1	117.97	117.47	118.47	0								0	0	0	0.027021	1	13519	13519		118.74	20.114	1				18348	3048	14958	14979	20363	20363					0.10387479408132094
IIFFIPLVTG	10	Unmodified	_IIFFIPLVTG_					0	0	0			REV__nc|ENSG00000112697|Q9NV96-2|TMEM30A	REV__nc|ENSG00000112697|Q9NV96-2|TMEM30A	MULTI-MSMS	OvCa9_classI_Rep3	3	560.3399047851562	2	560.344261	1118.67397	-7.144	-0.0040031	0.027217	1.5251E-05	-7.1168	-0.0039878	560.3441648343594	161.4	2.0053	160.03	159.58	161.59	-1.3692					105	41	5	0	0	0	0.75594	1	14005	14005		24.203	0	1	475740	+		18349	18112	14959	14980	20364	20364					0.1193783807334512
IIFFVPMIN	9	Unmodified	_IIFFVPMIN_					0	0	0			REV__tr|A0A7D7A6A3|A0A7D7A6A3_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09720PE=4SV=1	REV__tr|A0A7D7A6A3|A0A7D7A6A3_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09720PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.7705078125	2	547.309364	1092.60417	0.11592	6.3443E-05	-1.0501	-0.00057475	-0.93423	-0.00051131	547.3087773401511	57.89	1.3099	57.89	57.093	58.403	0					43	30	3	0	0	0	0.027462	1	4806	4806		33.516	10.473	1	611320	+		18350	32655	14960	14981	20365	20365					0.061576361330708096
IIFGHHAQT	9	Unmodified	_IIFGHHAQT_					0	0	0		tr|A0A553SMB1|A0A553SMB1_NIACIMannose-6-phosphateisomeraseOS=NialliacirculansOX=1397GN=manAPE=3SV=1	tr|A0A553SMB1|A0A553SMB1_NIACIMannose-6-phosphateisomeraseOS=NialliacirculansOX=1397GN=manAPE=3SV=1	tr|A0A553SMB1|A0A553SMB1_NIACIMannose-6-phosphateisomeraseOS=NialliacirculansOX=1397GN=manAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	511.2884216308594	2	512.272158	1022.52976	-0.47118	-0.00024137	2.5938	0.0013287	2.1226	0.0010873	512.2721315147099	95.199	0.80004	93.304	93.111	93.911	-1.8956					19	15	2	0	0	0	0.027462	1	6263	6263		30.504	2.2494	1	14201			18351	33820	14961	14982	20366	20366					0.019400093658987316
IIFGLSFLF	9	Unmodified	_IIFGLSFLF_					0	0	0		tr|A0A7D6W3R4|A0A7D6W3R4_9CLOTDMTfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_11115PE=3SV=1	tr|A0A7D6W3R4|A0A7D6W3R4_9CLOTDMTfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_11115PE=3SV=1	tr|A0A7D6W3R4|A0A7D6W3R4_9CLOTDMTfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_11115PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	528.8079833984375	2	528.810054	1055.60555	-3.2271	-0.0017065	-0.97808	-0.00051722	-4.2052	-0.0022238	528.8095043455028	144.1	1.2865	143.11	142.78	144.07	-0.99028					48	25	3	0	0	0	0.30002	1	12002	12002		62.978	5.1671	1	57081			18352	35458	14962	14983	20367	20367					0.07997593493473687
IIFHLFPIL	9	Unmodified	_IIFHLFPIL_					0	0	0			REV__nc|ENSG00000141338|O94911-1|ABCA8	REV__nc|ENSG00000141338|O94911-1|ABCA8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	556.8242797851562	2	556.846971	1111.67939	-1.7181	-0.00095671	-2.4176	-0.0013462	-4.1357	-0.0023029	556.8454533440557	126.31	0.83527	124.9	124.68	125.51	-1.4143					32	16	3	0	0	0	0.027462	1	12082	12082		29.842	8.1392	1	37136	+		18353	19728	14963	14984	20368	20368					0.1280156165578319
IIFIYLIRGM	10	Unmodified	_IIFIYLIRGM_					0	0	0			REV__tr|A0A7D6VYU4|A0A7D6VYU4_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17860PE=4SV=1	REV__tr|A0A7D6VYU4|A0A7D6VYU4_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17860PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8690795898438	2	619.87012	1237.72569	-1.8762	-0.001163	0.78566	0.000487	-1.0905	-0.00067597	619.8704234308321	147.79	3.8764	146.35	144.25	148.12	-1.4351					189	77	4	0	0	0	0.81289	1	14377	14377		17.365	1.7232	1	269210	+		18354	31826	14964	14985	20369	20369					0.11633258495567134
IIFKLINYL	9	Unmodified	_IIFKLINYL_					0	0	0		tr|A0A7D6VT67|A0A7D6VT67_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04140PE=4SV=1	tr|A0A7D6VT67|A0A7D6VT67_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04140PE=4SV=1	tr|A0A7D6VT67|A0A7D6VT67_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04140PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	568.8534545898438	2	568.857535	1135.70052	-7.0364	-0.0040027	-0.036741	-2.09E-05	-7.0732	-0.0040236	568.857375140279	161.4	1.8223	160.03	159.69	161.51	-1.3692					107	37	5	0	0	0	0.65476	1	14061	14061		25.45	2.4077	1	827460			18355	35090	14965	14986	20370	20370					0.1380952696465556
IIFRVFDM	8	Unmodified	_IIFRVFDM_					0	0	0			REV__ENSG00000130150|ENST00000380492|MOSPD2	REV__ENSG00000130150|ENST00000380492|MOSPD2	MULTI-MSMS	OvCa9_classI_Rep3	3	520.7843627929688	2	520.783513	1039.55247	-1.9205	-0.0010002	2.9651	0.0015442	1.0446	0.000544	520.7849648493748	140.2	1.1316	139.16	138.79	139.92	-1.0339					49	22	3	0	0	0	0.71369	1	11553	11553		40.573	3.4135	1	84780	+		18356	18922	14966	14987	20371	20371					0.03427892439140123
IIFSAPTR	8	Unmodified	_IIFSAPTR_					0	0	0			REV__ENST00000489057.1_1_1:156469342-156470480:-|nuORF	REV__ENST00000489057.1_1_1:156469342-156470480:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	452.7679748535156	2	452.766178	903.517802	0.16981	7.6886E-05	3.3534	0.0015183	3.5232	0.0015952	452.76761230247484	33	2.0381	33	32.453	34.491	0					104	41	4	0	0	0	0.59148	1	1500	1500		65.803	5.5092	1	772630	+		18357	24704	14967	14988	20372	20372					0.0621839262270214
IIFSASRGCSI	11	Carbamidomethyl (C)	_IIFSASRGC(Carbamidomethyl (C))SI_	IIFSASRGC(1)SI		IIFSASRGC(60)SI		0	1	0		ENST00000455089.5_1_7:55087016-55210125:+|nuORF	ENST00000455089.5_1_7:55087016-55210125:+|nuORF	ENST00000455089.5_1_7:55087016-55210125:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	605.815185546875	2	605.816073	1209.61759	0.98318	0.00059562	-1.5691	-0.00095061	-0.58596	-0.00035498	605.8149294907378	152.12	3.19	152.12	151.74	154.93	0					156	68	3	0	0	0	0.41656	1	17910	17910		59.931	15.814	1	906760			18358	12093	14968	14989	20373	20373	138				0.021168421743368526
IIFSKIIGVF	10	Unmodified	_IIFSKIIGVF_					0	0	0		nc|ENSG00000085563|P08183-2|ABCB1;ENSG00000085563|ENST00000622132|ABCB1	nc|ENSG00000085563|P08183-2|ABCB1	nc|ENSG00000085563|P08183-2|ABCB1	MULTI-MSMS	OvCa9_classI_Rep3	3	568.8532104492188	2	568.857535	1135.70052	-7.0364	-0.0040027	-0.036741	-2.09E-05	-7.0732	-0.0040236	568.857375140279	161.4	1.8223	160.03	159.69	161.51	-1.3692					107	37	5	0	0	0	0.76627	1	14073	14073		23.042	2.0956	1	827460			18359	1734	14969	14990	20374	20374					0.1380952696465556
IIFVLKGNLL	10	Unmodified	_IIFVLKGNLL_					0	0	0		tr|A0A7D6VML7|A0A7D6VML7_9CLOTSpoOBalpha-helicaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15875PE=4SV=1	tr|A0A7D6VML7|A0A7D6VML7_9CLOTSpoOBalpha-helicaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15875PE=4SV=1	tr|A0A7D6VML7|A0A7D6VML7_9CLOTSpoOBalpha-helicaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15875PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.3539428710938	2	565.37081	1128.72707	1.552	0.00087745	-2.3696	-0.0013397	-0.81765	-0.00046227	565.3692181587145	144.27	0.1971	144.27	144.16	144.35	0					8	3	3	0	0	0	0.027021	1	16867	16867		21.96	0	1	43991			18360	34662	14970	14991	20375	20375					0.16785215855998104
IIGAAMISTL	10	Unmodified	_IIGAAMISTL_					0	0	0			REV__tr|A0A553STL3|A0A553STL3_NIACIGntPfamilypermeaseOS=NialliacirculansOX=1397GN=CEQ21_05095PE=4SV=1	REV__tr|A0A553STL3|A0A553STL3_NIACIGntPfamilypermeaseOS=NialliacirculansOX=1397GN=CEQ21_05095PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.28704833984375	2	495.288628	988.562703	-1.8823	-0.00093227	-2.2263	-0.0011027	-4.1086	-0.002035	495.2873689989915	108.37	1.9345	106.64	106.22	108.15	-1.7256					94	37	4	0	0	0	0.41846	2	9914	9914;9954		65.803	8.5839	1	532550	+		18361	30980	14971	14992	20376;20377	20376					0.06796455373739718
IIGDLAGPL	9	Unmodified	_IIGDLAGPL_					0	0	0			REV__ENST00000485324.1_1_X:152958408-152959565:+|nuORF	REV__ENST00000485324.1_1_X:152958408-152959565:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	434.7593688964844	2	434.760561	867.506569	-0.54476	-0.00023684	-2.3576	-0.001025	-2.9023	-0.0012618	434.7594502813862	138.35	2.0585	138.12	137.54	139.6	-0.22697					104	41	4	0	0	0	0.6959	1	13868	13868		19.36	1.0356	1	279250	+		18362	18976	14972	14993	20378	20378					0.06751570528570028
IIGEKRKGS	9	Unmodified	_IIGEKRKGS_					0	0	0			REV__nc|ENSG00000158234|Q9NVQ4|FAIM	REV__nc|ENSG00000158234|Q9NVQ4|FAIM	MULTI-MSMS	OvCa99_classI_Rep5	1	494.30255126953125	2	494.300916	986.587279	0.64985	0.00032122	0.97144	0.00048019	1.6213	0.00080141	494.30133224197016	158.55	0.81053	158.55	158.23	159.04	0					38	16	3	0	0	0	0.69123	1	18597	18597		20.947	1.587	1	650660	+		18363	20559	14973	14994	20379	20379					0.09344851571484014
IIGELKIR	8	Unmodified	_IIGELKIR_					0	0	0			REV__ENSG00000108055|ENST00000361804|SMC3	REV__ENSG00000108055|ENST00000361804|SMC3	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.3102111816406	2	471.310752	940.606951	0.63501	0.00029929	-0.99591	-0.00046938	-0.36089	-0.00017009	471.31024904441927	22.362	2.2823	21.024	20.523	22.806	-1.3386					219	69	5	0	0	0	0.50747	2	282	282;348		76.774	7.9894	1	1692100	+		18364	17871	14974	14995	20380;20381	20380					0.13427227582235446
IIGELKIR	8	Unmodified	_IIGELKIR_					0	0	0			REV__ENSG00000108055|ENST00000361804|SMC3	REV__ENSG00000108055|ENST00000361804|SMC3	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.3105773925781	2	471.310752	940.606951	1.3289	0.00062632	-1.6854	-0.00079433	-0.35646	-0.000168	471.3099028886094	32.057	2.5601	29.362	28.732	31.293	-2.6954					224	67	4	0	0	0	0.72896	1	760	760		37.159	1.5408	1	1074400	+		18365	17871	14974	14995	20382	20382					0.13427227582235446
IIGFLSVIA	9	Unmodified	_IIGFLSVIA_					0	0	0		tr|A0A553SUT1|A0A553SUT1_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_07000PE=3SV=1	tr|A0A553SUT1|A0A553SUT1_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_07000PE=3SV=1	tr|A0A553SUT1|A0A553SUT1_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_07000PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	466.7937316894531	2	466.794404	931.574254	-0.11357	-5.3013E-05	0.08487	3.9617E-05	-0.028699	-1.3397E-05	466.7942385092766	114.69	1.6288	113.63	113.3	114.93	-1.055					72	32	3	0	0	0	0.1595	1	8474	8474		83.287	0	1	225500			18366	34638	14975	14996	20383	20383					0.10573020459378313
IIGKAQELDQN	11	Unmodified	_IIGKAQELDQN_					0	0	0			REV__tr|A0A553SSS6|A0A553SSS6_NIACIPhosphate-specifictransportsystemaccessoryproteinPhoUOS=NialliacirculansOX=1397GN=phoUPE=3SV=1	REV__tr|A0A553SSS6|A0A553SSS6_NIACIPhosphate-specifictransportsystemaccessoryproteinPhoUOS=NialliacirculansOX=1397GN=phoUPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	614.7392578125	2	614.830234	1227.64592	1.3923	0.00085602	-2.5403	-0.0015618	-1.148	-0.0007058	614.8285324657311	118.81	0.69479	117.79	117.58	118.28	-1.0271					27	13	4	0	0	0	0.024982	1	9004	9004		75.043	0	1	27338	+		18367	30873	14976	14997	20384	20384					0.04119863355299458
IIGLEKHFPLI	11	Unmodified	_IIGLEKHFPLI_					0	0	0			REV__tr|A0A7D6VSP3|A0A7D6VSP3_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_17540PE=4SV=1	REV__tr|A0A7D6VSP3|A0A7D6VSP3_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_17540PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	427.2497253417969	3	427.263941	1278.76999	1.5575	0.00066545	-0.42382	-0.00018108	1.1336	0.00048437	427.26354004955215	89.615	1.3853	88.313	87.79	89.176	-1.302					74	27	4	0	0	0	0.025911	1	7926	7926		14.086	0	1	69278	+		18368	31528	14977	14998	20385	20385					0.14175985913425393
IIGLENPI	8	Unmodified	_IIGLENPI_					0	0	0		tr|A0A7D6VYM8|A0A7D6VYM8_9CLOTCation-transportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16575PE=4SV=1	tr|A0A7D6VYM8|A0A7D6VYM8_9CLOTCation-transportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16575PE=4SV=1	tr|A0A7D6VYM8|A0A7D6VYM8_9CLOTCation-transportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16575PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	434.7591857910156	2	434.760561	867.506569	-0.54476	-0.00023684	-2.3576	-0.001025	-2.9023	-0.0012618	434.7594502813862	138.35	2.0585	138.12	137.54	139.6	-0.22697					104	41	4	0	0	0	0.75724	1	13757	13757		23.037	2.5549	1	279250			18369	35335	14978	14999	20386	20386					0.06751570528570028
IIGLNPLPD	9	Unmodified	_IIGLNPLPD_					0	0	0		ENSG00000157637|ENST00000374759|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	MULTI-SECPEP	OvCa9_classI_Rep3	3	476.3211975097656	2	476.279118	950.543683	1.1353	0.0005407	-0.99809	-0.00047537	0.13717	6.5332E-05	476.27855752918595	110.36	0.57902	109.22	108.98	109.56	-1.1444					14	10	2	0	0	0	0.02741	1	7963	7963		42.396	0	1	21970			18370	5906	14979	15000	20387	20387					0.06643242074335376
IIGLPLVYLIL	11	Unmodified	_IIGLPLVYLIL_					0	0	0			REV__ENSG00000185149|ENST00000329476|NPY2R	REV__ENSG00000185149|ENST00000329476|NPY2R	MULTI-MSMS	OvCa9_classI_Rep2	2	409.60760498046875	3	409.608937	1225.80498	0.6889	0.00028218	-3.0246	-0.0012389	-2.3357	-0.00095672	409.60766459120623	104.29	12.102	103.72	103.28	115.38	-0.57639					699	244	5	0	0	0	0.5466	1	9940	9940		49.536	5.1589	1	1628000	+		18371	22483	14980	15001	20388	20388					0.20111228721384578
IIGLPLVYLIL	11	Unmodified	_IIGLPLVYLIL_					0	0	0			REV__ENSG00000185149|ENST00000329476|NPY2R	REV__ENSG00000185149|ENST00000329476|NPY2R	MULTI-MSMS	OvCa9_classI_Rep3	3	409.6075134277344	3	409.608937	1225.80498	1.1396	0.00046679	-3.5153	-0.0014399	-2.3757	-0.00097312	409.6074659919173	107.95	5.8573	106.76	106.27	112.13	-1.1978					409	114	4	0	0	0	0.43993	1	7734	7734		58.23	3.5076	1	1037400	+		18372	22483	14980	15001	20389	20389					0.20111228721384578
IIGLSEIVET	10	Unmodified	_IIGLSEIVET_					0	0	0			REV__nc|ENSG00000134278|Q08AE8-5|SPIRE1	REV__nc|ENSG00000134278|Q08AE8-5|SPIRE1	MULTI-MSMS	OvCa99_classI_Rep5	1	537.3080444335938	2	537.308072	1072.60159	0.60065	0.00032274	1.6661	0.00089521	2.2668	0.0012179	537.3088532268252	160.46	0.9505	160.46	160.16	161.11	0					40	18	3	0	0	0	0.52321	1	18804	18804		51.335	10.557	1	334390	+		18373	19190	14981	15002	20390	20390					0.0681945920907765
IIGNLYDNTI	10	Unmodified	_IIGNLYDNTI_					0	0	0			REV__tr|A0A553SNU8|A0A553SNU8_NIACIDipicolinicacidsynthetasesubunitAOS=NialliacirculansOX=1397GN=dpaAPE=4SV=1	REV__tr|A0A553SNU8|A0A553SNU8_NIACIDipicolinicacidsynthetasesubunitAOS=NialliacirculansOX=1397GN=dpaAPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	568.3031616210938	2	568.303321	1134.59209	2.8224	0.001604	-3.4072	-0.0019363	-0.5848	-0.00033234	568.3014781652474	96.355	1.0976	96.355	95.869	96.966	0					54	25	3	0	0	0	0.13777	1	10558	10558		104.06	13.456	1	7521300	+		18374	30456	14982	15003	20391	20391					0.030176909235706262
IIGPCAIK	8	Unmodified	_IIGPCAIK_					0	0	0		tr|A0A553SLL4|A0A553SLL4_NIACILrgBfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20880PE=4SV=1	tr|A0A553SLL4|A0A553SLL4_NIACILrgBfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20880PE=4SV=1	tr|A0A553SLL4|A0A553SLL4_NIACILrgBfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20880PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.21771240234375	2	407.746399	813.478245	0.80926	0.00032997	3.7078	0.0015118	4.5171	0.0018418	407.74787736238414	54.11	0.98134	54.11	53.609	54.59	0					31	23	2	0	0	0	0.028476	1	4289	4289		35.201	1.6851	1	575170			18375	33739	14983	15004	20392	20392					0.06404549347621469
IIGPGNGPT	9	Unmodified	_IIGPGNGPT_					0	0	0		tr|A0A553SU70|A0A553SU70_NIACIWxLdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06470PE=4SV=1	tr|A0A553SU70|A0A553SU70_NIACIWxLdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06470PE=4SV=1	tr|A0A553SU70|A0A553SU70_NIACIWxLdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06470PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	413.2276611328125	2	413.226885	824.439217	0.75589	0.00031235	-0.75883	-0.00031357	-0.0029375	-1.2138E-06	413.22646768223535	59.958	1.6843	56.528	56.259	57.944	-3.43					70	33	3	0	0	0	0.29717	1	4029	4029		63.306	3.0123	1	777910			18376	34576	14984	15005	20393	20393					0.019975403176204054
IIGPGNGPT	9	Unmodified	_IIGPGNGPT_					0	0	0		tr|A0A553SU70|A0A553SU70_NIACIWxLdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06470PE=4SV=1	tr|A0A553SU70|A0A553SU70_NIACIWxLdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06470PE=4SV=1	tr|A0A553SU70|A0A553SU70_NIACIWxLdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06470PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	413.226885	824.439217	0.43256	0.00017874	-0.44689	-0.00018467	-0.014338	-5.9247E-06	413.2265433144129	59.421	1.6101	56.641	55.986	57.596	-2.7801	0.056563	0.00019436	NaN	63.306	65	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141460			18377	34576	14984	15005							0.019975403176204054
IIGPKLTALPK	11	Unmodified	_IIGPKLTALPK_					0	0	0		ENST00000602414.5_1_4:119199974-119200130:+|nuORF	ENST00000602414.5_1_4:119199974-119200130:+|nuORF	ENST00000602414.5_1_4:119199974-119200130:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8819580078125	2	575.881542	1149.74853	0.38494	0.00022168	-0.56152	-0.00032337	-0.17658	-0.00010169	575.8811011364741	129.09	1.384	128.87	128.43	129.81	-0.22697					68	27	4	0	0	0	0.71789	1	12691	12691		23.523	0.48021	1	149030			18378	14236	14985	15006	20394	20394					0.1796460088467029
IIGPKLTALPK	11	Unmodified	_IIGPKLTALPK_					0	0	0		ENST00000602414.5_1_4:119199974-119200130:+|nuORF	ENST00000602414.5_1_4:119199974-119200130:+|nuORF	ENST00000602414.5_1_4:119199974-119200130:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8802490234375	2	575.881542	1149.74853	-0.33635	-0.0001937	0.13878	7.9921E-05	-0.19757	-0.00011378	575.8816146863785	130.37	1.3721	129.25	128.83	130.21	-1.1121					69	27	4	0	0	0	0.71048	1	10393	10393		26.063	4.3776	1	151570			18379	14236	14985	15006	20395	20395					0.1796460088467029
IIGRLLEV	8	Unmodified	_IIGRLLEV_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	OvCa9_classI_Rep2	2	456.7974548339844	2	456.797478	911.580402	0.29232	0.00013353	-0.61394	-0.00028045	-0.32162	-0.00014691	456.7971214119819	103.69	3.5724	103.12	102.73	106.3	-0.57639					168	71	3	0	0	0	0.32444	3	9563	9563;9599;9611		102.77	5.3685	1	1420000			18380	7303	14986	15007	20396;20397;20398	20396					0.1210753869090695
IIGRLLEV	8	Unmodified	_IIGRLLEV_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	OvCa9_classI_Rep3	3	456.7983703613281	2	456.797478	911.580402	0.40268	0.00018394	-0.77327	-0.00035323	-0.37058	-0.00016928	456.7970629432732	104.69	4.1681	103.25	102.81	106.98	-1.4342					186	80	4	0	0	0	0.30448	4	7325	7297;7307;7313;7325		106.42	5.4493	1	1565700			18381	7303	14986	15007	20399;20400;20401;20402	20402					0.1210753869090695
IIGRLLEV	8	Unmodified	_IIGRLLEV_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.7973327636719	2	456.797478	911.580402	-0.19337	-8.8331E-05	-0.21738	-9.9301E-05	-0.41075	-0.00018763	456.7973138081142	105.4	4.1348	103.39	102.95	107.09	-2.0161					221	81	4	0	0	0	0.36941	2	9573	9573;9688		94.006	5.4763	1	1556700			18382	7303	14986	15007	20403;20404	20403					0.1210753869090695
IIGSDSDT	8	Unmodified	_IIGSDSDT_					0	0	0		tr|A0A7D7A4B0|A0A7D7A4B0_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00915PE=3SV=1	tr|A0A7D7A4B0|A0A7D7A4B0_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00915PE=3SV=1	tr|A0A7D7A4B0|A0A7D7A4B0_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00915PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.2174987792969	2	404.190165	806.365778	1.228	0.00049633	0.54551	0.00022049	1.7735	0.00071682	404.19034604353703	47.065	0.61748	47.065	46.676	47.294	0					22	13	2	0	0	0	0.028476	1	3334	3334		44.531	19.081	1	269650			18383	36138	14987	15008	20405	20405					-0.04515052915508022
IIGSVFLILGY	11	Unmodified	_IIGSVFLILGY_					0	0	0		tr|A0A553SID5|A0A553SID5_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=celBPE=4SV=1	tr|A0A553SID5|A0A553SID5_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=celBPE=4SV=1	tr|A0A553SID5|A0A553SID5_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=celBPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	597.856689453125	2	597.860275	1193.706	-2.7036	-0.0016164	-3.9017	-0.0023327	-6.6053	-0.0039491	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.72244	1	12789	12789		21.96	1.9631	1	591030			18384	33369	14988	15009	20406	20406					0.11689205756488263
IIGTFSMN	8	Unmodified	_IIGTFSMN_					0	0	0		nc|ENSG00000168539|P11229-2|CHRM1;ENSG00000168539|ENST00000306960|CHRM1	nc|ENSG00000168539|P11229-2|CHRM1	nc|ENSG00000168539|P11229-2|CHRM1	MULTI-SECPEP	OvCa9_classI_Rep2	2	441.3000183105469	2	441.723121	881.431689	0.75854	0.00033506	0.13369	5.9053E-05	0.89223	0.00039412	441.7229377670644	60.016	0.52427	57.245	57.082	57.606	-2.7702					15	9	2	0	0	0	0.028476	1	4391	4391		18.324	0.95945	1	6725.8			18385	6919	14989	15010	20407	20407					-0.013769352743111085
IIGTTHPS	8	Unmodified	_IIGTTHPS_					0	0	0		nc|ENSG00000198520|Q6PIY5-2|ARMH1;ENST00000357508.5_1_1:45155363-45190065:+|nuORF;ENSG00000198520|ENST00000535358|ARMH1	nc|ENSG00000198520|Q6PIY5-2|ARMH1	nc|ENSG00000198520|Q6PIY5-2|ARMH1	MULTI-MSMS	OvCa99_classI_Rep5	1	413.2278747558594	2	413.226885	824.439217	0.4342	0.00017942	0.0049727	2.0549E-06	0.43917	0.00018148	413.2267486587091	55.578	1.2666	55.578	55.315	56.581	0					66	30	4	0	0	0	0.52992	1	4577	4577		74.517	5.4236	1	6938200			18386	8823	14990	15011	20408	20408					0.019975403176204054
IIGVIWLFIS	10	Unmodified	_IIGVIWLFIS_					0	0	0			REV__tr|A0A7D6VS48|A0A7D6VS48_9CLOTNrampfamilydivalentmetaltransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_04260PE=4SV=1	REV__tr|A0A7D6VS48|A0A7D6VS48_9CLOTNrampfamilydivalentmetaltransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_04260PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.336181640625	2	580.857535	1159.70052	-0.48478	-0.00028159	-3.9336	-0.0022849	-4.4184	-0.0025665	580.8551221395703	104.82	0.91415	104.82	104.66	105.57	0					31	20	2	0	0	0	0.026982	1	11752	11752		16.473	0	1	268400	+		18387	31469	14991	15012	20409	20409					0.12705526964668934
IIHCNRPLI	9	Unmodified	_IIHCNRPLI_					0	0	0			REV__ENST00000340855.10_2_X:148561276-148561471:-|nuORF	REV__ENST00000340855.10_2_X:148561276-148561471:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.3240966796875	2	539.813136	1077.61172	0.90671	0.00048945	3.2188	0.0017375	4.1255	0.002227	539.8146893618882	157.62	0.3056	157.62	157.5	157.8	0					8	5	2	0	0	0	0.027462	1	18477	18477		31.955	0	1	26036	+		18388	24627	14992	15013	20410	20410					0.07601788453325753
IIHFHLGI	8	Unmodified	_IIHFHLGI_					0	0	0		ENST00000266085.6_1_22:33255513-33255645:+|nuORF	ENST00000266085.6_1_22:33255513-33255645:+|nuORF	ENST00000266085.6_1_22:33255513-33255645:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	475.28326416015625	2	475.284537	948.554522	0.03186	1.5143E-05	-4.2543	-0.002022	-4.2224	-0.0020069	475.2823931991299	52.95	0.69084	52.95	52.741	53.432	0					38	15	4	0	0	0	0.69862	1	4177	4177		43.626	0	1	4122700			18389	9956	14993	15014	20411	20411					0.07818689239263676
IIHGEFTDV	9	Unmodified	_IIHGEFTDV_					0	0	0			REV__nc|ENSG00000006071|Q09428-2|ABCC8	REV__nc|ENSG00000006071|Q09428-2|ABCC8	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.833740234375	2	515.763832	1029.51311	2.1327	0.0011	1.3995	0.0007218	3.5322	0.0018218	516.2664972373354	84.215	0.25248	84.215	84.093	84.345	0					8	5	2	0	0	0	0.027462	1	8777	8777		24.203	0	1	170300	+		18390	16409	14994	15015	20412	20412					-0.00046536310719602625
IIHHYKQN	8	Unmodified	_IIHHYKQN_					0	0	0		L1PA7_dup9238|chr10:48372221-48377370:+|1.4943041569802586|0.2795461482764699|2.42|429.0|77|2|sense	L1PA7_dup9238|chr10:48372221-48377370:+|1.4943041569802586|0.2795461482764699|2.42|429.0|77|2|sense	L1PA7_dup9238|chr10:48372221-48377370:+|1.4943041569802586|0.2795461482764699|2.42|429.0|77|2|sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.8036499023438	2	526.785433	1051.55631	-0.82522	-0.00043471	-0.91073	-0.00047976	-1.7359	-0.00091447	526.7848050344268	80.875	1.5784	78.553	77.929	79.507	-2.3226					50	30	3	0	0	0	0.028476	1	4446	4446		37.028	17.032	1	152440			18391	14766	14995	15016	20413	20413					0.03259698257238597
IIHIFFSF	8	Unmodified	_IIHIFFSF_					0	0	0			REV__ENST00000377685.9_1_12:110784377-110784521:+|nuORF	REV__ENST00000377685.9_1_12:110784377-110784521:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.8130493164062	2	512.286746	1022.55894	1.7699	0.0009067	-4.0994	-0.0021001	-2.3295	-0.0011934	512.284709068885	117.14	0.55546	117.14	116.91	117.46	0					16	11	2	0	0	0	0.028476	1	13412	13412		28.254	0	1	104120	+		18392	25124	14996	15017	20414	20414					0.0485615366218326
IIHKVCSI	8	Unmodified	_IIHKVCSI_					0	0	0			REV__ENSG00000068366|ENST00000672401|ACSL4	REV__ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.7741394042969	2	456.770406	911.526258	1.7609	0.00080431	2.5985	0.0011869	4.3593	0.0019912	456.771431034772	138.57	1.0127	137.04	136.79	137.8	-1.5284					33	20	2	0	0	0	0.75241	1	13516	13516		25.45	1.2474	1	54510	+		18393	16851	14997	15018	20415	20415					0.06695623267671635
IIHLVCKLL	9	Unmodified	_IIHLVCKLL_					0	0	0		nc|ENSG00000158079|A2A3K4|PTPDC1;PTPDC1|p.A673Ffs*51|1|0.13|ENSG00000158079|chr9:94101729-94101730|-/GTTTCATAGAGAGAAACTGGGGCTTACAGAATTC|frameshift_variant;nc|ENSG00000158079|A2A3K4-2|PTPDC1;ENSG00000158079|ENST00000620992|PTPDC1	nc|ENSG00000158079|A2A3K4|PTPDC1	nc|ENSG00000158079|A2A3K4|PTPDC1	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.3140258789062	2	526.338455	1050.66236	0.92867	0.00048879	-2.266	-0.0011927	-1.3373	-0.00070387	526.337144015612	125.47	1.0903	124.42	123.84	124.94	-1.0519					24	20	2	0	0	0	0.027462	1	9800	9800		25.45	0	1	15963			18394	5930	14998	15019	20416	20416					0.13905317778335302
IIHLWLLD	8	Unmodified	_IIHLWLLD_					0	0	0			REV__TMEM63A|p.T197I|1|0.04|ENSG00000196187|chr1:225866659-225866659|G/A|missense_variant	REV__TMEM63A|p.T197I|1|0.04|ENSG00000196187|chr1:225866659-225866659|G/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	511.2867126464844	2	511.805303	1021.59605	-0.3834	-0.00019623	2.6712	0.0013671	2.2878	0.0011709	511.80698580459267	94.827	0.53954	93.728	93.411	93.95	-1.0995					12	10	2	0	0	0	0.028476	1	8512	8512		20.482	0	1	21745	+		18395	29515	14999	15020	20417	20417					0.08611825207947277
IIHPHCLM	8	Unmodified	_IIHPHCLM_					0	0	0			REV__SIK3|p.S1029Vfs*11|1|0.11|ENSG00000160584|chr11:116858236-116858236|T/-|frameshift_variant	REV__SIK3|p.S1029Vfs*11|1|0.11|ENSG00000160584|chr11:116858236-116858236|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	482.7833557128906	2	482.248783	962.483013	-0.047722	-2.3014E-05	-1.263	-0.0006091	-1.3108	-0.00063211	482.2481927831557	80.503	0.91648	78.18	77.678	78.594	-2.3226					29	17	3	0	0	0	0.028476	1	4455	4455		16.705	0	1	30297	+		18396	20665	15000	15021	20418	20418					0.0002711021874119979
IIIADIKRG	9	Unmodified	_IIIADIKRG_					0	0	0		tr|A0A7D7A063|A0A7D7A063_9CLOTOrotidine5'-phosphatedecarboxylaseOS=ClostridiumintestinaleOX=36845GN=pyrFPE=3SV=1	tr|A0A7D7A063|A0A7D7A063_9CLOTOrotidine5'-phosphatedecarboxylaseOS=ClostridiumintestinaleOX=36845GN=pyrFPE=3SV=1	tr|A0A7D7A063|A0A7D7A063_9CLOTOrotidine5'-phosphatedecarboxylaseOS=ClostridiumintestinaleOX=36845GN=pyrFPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	499.7662353515625	2	499.821484	997.628415	0.81279	0.00040625	-0.64179	-0.00032078	0.171	8.547E-05	499.821139567159	65.571	1.55	62.875	62.365	63.915	-2.6958					69	29	4	0	0	0	0.027462	1	5116	5116		16.473	0	1	141930			18397	35986	15001	15022	20419	20419					0.1295061261093906
IIIAIVKKKM	10	Unmodified	_IIIAIVKKKM_					0	0	0			REV__tr|A0A7D6ZVB5|A0A7D6ZVB5_9CLOTBiotin/lipoyl-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03340PE=4SV=1	REV__tr|A0A7D6ZVB5|A0A7D6ZVB5_9CLOTBiotin/lipoyl-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03340PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	578.8572387695312	2	578.896137	1155.77772	-0.65655	-0.00038007	1.8046	0.0010447	1.1481	0.00066463	578.8973654053692	74.963	0.23796	71.732	71.629	71.867	-3.2308					5	4	2	0	0	0	0.027117	1	5872	5872		16.473	7.7795	1	10969	+		18398	32246	15002	15023	20420	20420					0.2060642190931503
IIIEHEGYGKV	11	Unmodified	_IIIEHEGYGKV_					0	0	0			REV__tr|A0A553SIU0|A0A553SIU0_NIACIYigZfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15525PE=3SV=1	REV__tr|A0A553SIU0|A0A553SIU0_NIACIYigZfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15525PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	629.8505859375	2	629.34552	1256.67649	-0.45295	-0.00028506	1.2056	0.00075872	0.75262	0.00047366	629.3462760573358	91.708	1.5197	89.165	88.657	90.176	-2.5425					62	29	4	0	0	0	0.025265	1	8035	8035		21.686	0	1	303380	+		18399	29927	15003	15024	20421	20421					0.05841641740312298
IIIGPLVCLI	10	Unmodified	_IIIGPLVCLI_					0	0	0			REV__tr|A0A553SF32|A0A553SF32_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_08120PE=4SV=1	REV__tr|A0A553SF32|A0A553SF32_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_08120PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.9430541992188	2	527.340664	1052.66677	0.60901	0.00032116	0.9194	0.00048484	1.5284	0.00080599	527.3416882857542	86.173	0.644	83.527	83.293	83.937	-2.6463					23	12	3	0	0	0	0.026839	1	7258	7258		35.201	0	1	29029	+		18400	29534	15004	15025	20422	20422					0.1425478220126024
IIIGPLVCLI	10	Unmodified	_IIIGPLVCLI_					0	0	0			REV__tr|A0A553SF32|A0A553SF32_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_08120PE=4SV=1	REV__tr|A0A553SF32|A0A553SF32_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_08120PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	527.340664	1052.66677	-1.6092	-0.0008486	4.7067	0.002482	3.0975	0.0016334	527.3429244480146	85.963	0.75067	83.743	83.436	84.187	-2.2204	0.10784	0.00053624	NaN	35.201	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35406	+		18401	29534	15004	15025							0.1425478220126024
IIIIATSVR	9	Unmodified	_IIIIATSVR_					0	0	0		HNRNPA3-TSNARE1|1|fusion;nc|ENSG00000171045|Q96NA8-2|TSNARE1;ENSG00000171045|ENST00000524325|TSNARE1	HNRNPA3-TSNARE1|1|fusion;nc|ENSG00000171045|Q96NA8-2|TSNARE1	HNRNPA3-TSNARE1|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep3	3	494.315185546875	2	493.32386	984.633166	0.57396	0.00028315	-0.85572	-0.00042214	-0.28175	-0.000139	493.32317214285604	119.86	0.54111	118.84	118.63	119.17	-1.0271					15	10	2	0	0	0	0.027462	1	9134	9134		27.882	3.6795	1	19637			18402	14485;7163	15005	15026	20423	20423					0.1402349675371397
IIIIATSVR	9	Unmodified	_IIIIATSVR_					0	0	0		HNRNPA3-TSNARE1|1|fusion;nc|ENSG00000171045|Q96NA8-2|TSNARE1;ENSG00000171045|ENST00000524325|TSNARE1	HNRNPA3-TSNARE1|1|fusion;nc|ENSG00000171045|Q96NA8-2|TSNARE1	HNRNPA3-TSNARE1|1|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	493.32386	984.633166	-1.0491	-0.00051754	0.41163	0.00020307	-0.63745	-0.00031447	493.3237330144776	118.72	0.59756	118.57	118.33	118.93	-0.14754	-0.16106	0.00050746	NaN	27.882	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14431			18403	14485;7163	15005	15026							0.1402349675371397
IIIKRGPLD	9	Unmodified	_IIIKRGPLD_					0	0	0			REV__tr|A0A7D6ZIK0|A0A7D6ZIK0_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_04635PE=4SV=1	REV__tr|A0A7D6ZIK0|A0A7D6ZIK0_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_04635PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.84747314453125	2	512.829309	1023.64407	1.1968	0.00061373	-1.6513	-0.00084685	-0.45456	-0.00023311	512.8282863095935	85.849	0.74883	83.203	82.945	83.693	-2.6463					18	14	2	0	0	0	0.027462	1	7209	7209		16.473	0	1	23927	+		18404	32060	15006	15027	20424	20424					0.13318899127989425
IIIKSSHSL	9	Unmodified	_IIIKSSHSL_					0	0	0			REV__ENST00000533086.5_1_19:15228578-15234387:-|nuORF	REV__ENST00000533086.5_1_19:15228578-15234387:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	499.3053283691406	2	499.305667	996.596781	-0.016923	-8.4497E-06	-0.10289	-5.1372E-05	-0.11981	-5.9822E-05	499.30548168431477	110.18	1.3469	109.04	108.66	110.01	-1.1444					68	25	4	0	0	0	0.19758	1	7949	7949		76.774	2.5191	1	319080	+		18405	17699	15007	15028	20425	20425					0.09834619856997051
IIILPDCL	8	Unmodified	_IIILPDCL_					0	0	0		ENSG00000123572|ENST00000243300|NRK;nc|ENSG00000123572|Q7Z2Y5-2|NRK	ENSG00000123572|ENST00000243300|NRK	ENSG00000123572|ENST00000243300|NRK	MULTI-SECPEP	OvCa9_classI_Rep2	2	450.5973815917969	2	450.267164	898.519776	2.3849	0.0010739	1.8685	0.00084134	4.2535	0.0019152	450.26778895992635	73.496	1.831	71.096	69.854	71.685	-2.3999					60	34	2	0	0	0	0.028476	1	6004	6004		21.702	1.2205	1	35034			18406	3606	15008	15029	20426	20426					0.06645685316300387
IIILPDCL	8	Unmodified	_IIILPDCL_					0	0	0		ENSG00000123572|ENST00000243300|NRK;nc|ENSG00000123572|Q7Z2Y5-2|NRK	ENSG00000123572|ENST00000243300|NRK	ENSG00000123572|ENST00000243300|NRK	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	450.267164	898.519776	0.37401	0.0001684	3.4529	0.0015547	3.8269	0.0017231	450.2683317185637	74.558	1.3961	71.327	70.906	72.302	-3.2308	0.11543	0.001089	NaN	21.702	62	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110460			18407	3606	15008	15029							0.06645685316300387
IIILPPLMM	9	Unmodified	_IIILPPLMM_					0	0	0		tr|A0A553SHZ8|A0A553SHZ8_NIACITypeVIIsecretionproteinEssCOS=NialliacirculansOX=1397GN=essCPE=4SV=1	tr|A0A553SHZ8|A0A553SHZ8_NIACITypeVIIsecretionproteinEssCOS=NialliacirculansOX=1397GN=essCPE=4SV=1	tr|A0A553SHZ8|A0A553SHZ8_NIACITypeVIIsecretionproteinEssCOS=NialliacirculansOX=1397GN=essCPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.8424072265625	2	520.815967	1039.61738	0.46111	0.00024015	-1.1634	-0.00060593	-0.70232	-0.00036578	520.8145298104148	104.21	0.20882	102.77	102.66	102.86	-1.4347					5	3	2	0	0	0	0.027462	1	7254	7254		29.842	8.1392	1	4478.8			18408	33331	15009	15030	20427	20427					0.09915750920799837
IIINEEPIL	9	Unmodified	_IIINEEPIL_					0	0	0			REV__tr|A0A553SHK8|A0A553SHK8_NIACIDNAgyrasesubunitAOS=NialliacirculansOX=1397GN=gyrAPE=3SV=1	REV__tr|A0A553SHK8|A0A553SHK8_NIACIDNAgyrasesubunitAOS=NialliacirculansOX=1397GN=gyrAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.3125610351562	2	527.313158	1052.61176	0.015558	8.2042E-06	-2.5481	-0.0013436	-2.5325	-0.0013354	527.3116773423632	33.079	1.7375	30.384	29.903	31.641	-2.6954					77	33	4	0	0	0	0.50149	1	853	853		42.396	5.237	1	327680	+		18409	29811	15010	15031	20428	20428					0.08756066934324735
IIIRALLSP	9	Unmodified	_IIIRALLSP_					0	0	0			REV__ENST00000552818.1_1_12:48535711-48536092:+|nuORF	REV__ENST00000552818.1_1_12:48535711-48536092:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	498.33319091796875	2	498.334227	994.653902	-0.6989	-0.00034829	0.47295	0.00023569	-0.22596	-0.0001126	498.33435878229506	133.81	2.0717	132.69	132.27	134.34	-1.1226					102	41	4	0	0	0	0.091859	1	10745	10745		99.375	11.679	1	981140	+		18410	27501	15011	15032	20429	20429					0.15636087133384535
IIISADKII	9	Unmodified	_IIISADKII_					0	0	0			REV__tr|A0A553SGF8|A0A553SGF8_NIACIThiaminebiosynthesisproteinMoeBOS=NialliacirculansOX=1397GN=CEQ21_10770PE=4SV=1	REV__tr|A0A553SGF8|A0A553SGF8_NIACIThiaminebiosynthesisproteinMoeBOS=NialliacirculansOX=1397GN=CEQ21_10770PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	493.3182678222656	2	493.318243	984.621933	0.61838	0.00030506	-0.65148	-0.00032139	-0.033099	-1.6328E-05	493.31777001150425	123.45	1.971	123.21	122.89	124.86	-0.23193					97	39	4	0	0	0	0.31747	1	11994	11994		60.972	0	1	599460	+		18411	29695	15012	15033	20430	20430					0.12900674659567812
IIISHAVKIS	10	Unmodified	_IIISHAVKIS_					0	0	0			REV__tr|A0A7D6ZXR4|A0A7D6ZXR4_9CLOTDUF4829domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22860PE=4SV=1	REV__tr|A0A7D6ZXR4|A0A7D6ZXR4_9CLOTDUF4829domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22860PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	540.8409423828125	2	540.842416	1079.67028	-0.50813	-0.00027482	-2.1391	-0.0011569	-2.6473	-0.0014318	540.8411675935439	31.395	0.98717	28.685	28.494	29.481	-2.7097					43	19	3	0	0	0	0.79917	1	970	970		19.104	0.77911	1	162100	+		18412	32342	15013	15034	20431	20431					0.13363168299474637
IIISLARLP	9	Unmodified	_IIISLARLP_					0	0	0		ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3335876464844	2	498.334227	994.653902	0.034655	1.727E-05	-0.51496	-0.00025662	-0.48031	-0.00023935	498.3339335091273	123.54	3.2541	123.31	122.99	126.25	-0.23193					175	65	5	0	0	0	0.52083	1	12034	12034		40.573	4.9543	1	3004600			18413	8708	15014	15035	20432	20432					0.15636087133384535
IIISLARLP	9	Unmodified	_IIISLARLP_					0	0	0		ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3332214355469	2	498.334227	994.653902	1.2643	0.00063007	-1.8659	-0.00092985	-0.60157	-0.00029978	498.3332884380841	124.71	3.4398	123.66	123.27	126.71	-1.0519					179	65	5	0	0	0	0.27546	1	9706	9706		65.803	5.5092	1	3929400			18414	8708	15014	15035	20433	20433					0.15636087133384535
IIISLARLP	9	Unmodified	_IIISLARLP_					0	0	0		ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3337707519531	2	498.334227	994.653902	3.0095	0.0014997	-3.4235	-0.001706	-0.41398	-0.0002063	498.33243610568087	134.14	2.7147	132.61	132.05	134.76	-1.5257					123	54	4	0	0	0	0.079296	1	12942	12942		102.77	3.3984	1	1105000			18415	8708	15014	15035	20434	20434					0.15636087133384535
IIITEGIKIH	10	Unmodified	_IIITEGIKIH_					0	0	0			REV__tr|A0A7D6W244|A0A7D6W244_9CLOT1-acyl-sn-glycerol-3-phosphateacyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05075PE=4SV=1	REV__tr|A0A7D6W244|A0A7D6W244_9CLOT1-acyl-sn-glycerol-3-phosphateacyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05075PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	568.853759765625	2	568.855524	1135.69649	-5.375	-0.0030576	2.0179	0.0011479	-3.3571	-0.0019097	568.8565433281535	160.72	1.3933	160.5	160.18	161.57	-0.22696					89	27	5	0	0	0	0.73378	1	16341	16341		26.693	0	1	747650	+		18416	31894	15015	15036	20435	20435					0.1340743747093711
IIITLLKNL	9	Unmodified	_IIITLLKNL_					0	0	0			REV__tr|A0A553SIG8|A0A553SIG8_NIACIPhospholipaseDfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_14840PE=4SV=1	REV__tr|A0A553SIG8|A0A553SIG8_NIACIPhospholipaseDfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_14840PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2998046875	2	520.857535	1039.70052	1.9328	0.0010067	0.45107	0.00023495	2.3839	0.0012417	520.8576138493462	86.199	1.7589	86.199	85.912	87.671	0					94	42	4	0	0	0	0.027455	1	9156	9156		42.396	3.3746	1	5705600	+		18417	29892	15016	15037	20436	20436					0.1822552696467028
IIIVPVDS	8	Unmodified	_IIIVPVDS_					0	0	0			REV__tr|A0A7D6ZZU9|A0A7D6ZZU9_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_07725PE=4SV=1	REV__tr|A0A7D6ZZU9|A0A7D6ZZU9_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_07725PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	428.26165771484375	2	428.262936	854.51132	-2.1797	-0.00093349	-0.96416	-0.00041291	-3.1439	-0.0013464	428.2624599299376	144.02	1.6837	143.79	143.2	144.88	-0.22697					114	33	5	0	0	0	0.74816	1	14439	14439		15.636	0.97212	1	330270	+		18418	32424	15017	15038	20437	20437					0.0782445467133357
IIIYDSRPL	9	Unmodified	_IIIYDSRPL_					0	0	0			REV__ENSG00000113716|ENST00000502717|HMGXB3	REV__ENSG00000113716|ENST00000502717|HMGXB3	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3162231445312	2	545.318774	1088.623	-2.8527	-0.0015556	-0.96726	-0.00052747	-3.8199	-0.0020831	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.50149	1	11677	11677		42.396	5.237	1	337600	+		18419	18167	15018	15039	20438	20438					0.08222889028479585
IIKATEGITYL	11	Unmodified	_IIKATEGITYL_					0	0	0		tr|A0A7D7A0V7|A0A7D7A0V7_9CLOTPeptidoglycan-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11725PE=3SV=1	tr|A0A7D7A0V7|A0A7D7A0V7_9CLOTPeptidoglycan-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11725PE=3SV=1	tr|A0A7D7A0V7|A0A7D7A0V7_9CLOTPeptidoglycan-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11725PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3563842773438	2	611.358096	1220.70164	-3.1571	-0.0019301	-0.12375	-7.5658E-05	-3.2809	-0.0020058	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.71498	1	12732	12732		24.519	0.99649	1	666990			18420	36011	15019	15040	20439	20439					0.1001169654291516
IIKCIYTF	8	Unmodified	_IIKCIYTF_					0	0	0			REV__nc|ENSG00000168116|Q9HCI6-2|KIAA1586	REV__nc|ENSG00000168116|Q9HCI6-2|KIAA1586	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.7183837890625	2	500.780439	999.546325	-0.33812	-0.00016932	1.7079	0.00085529	1.3698	0.00068596	500.77992134513124	40.81	0.2598	40.81	40.666	40.926	0					7	5	2	0	0	0	0.028476	1	2504	2504		26.796	10.323	1	31301	+		18421	28989	15020	15041	20440	20440					0.04653374207634897
IIKDKVKNM	9	Unmodified	_IIKDKVKNM_					0	0	0		tr|A0A7D7A645|A0A7D7A645_9CLOTbeta-N-acetylhexosaminidaseOS=ClostridiumintestinaleOX=36845GN=nagZPE=3SV=1	tr|A0A7D7A645|A0A7D7A645_9CLOTbeta-N-acetylhexosaminidaseOS=ClostridiumintestinaleOX=36845GN=nagZPE=3SV=1	tr|A0A7D7A645|A0A7D7A645_9CLOTbeta-N-acetylhexosaminidaseOS=ClostridiumintestinaleOX=36845GN=nagZPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	544.8243408203125	2	544.828452	1087.64235	-4.3629	-0.0023771	-2.7667	-0.0015074	-7.1296	-0.0038844	544.82700234604	154.97	0.71278	154.74	154.48	155.19	-0.22696					46	16	4	0	0	0	0.61208	1	15782	15782		30.504	1.3541	1	60082			18422	36186	15021	15042	20441	20441					0.10203522047731894
IIKDRKLL	8	Unmodified	_IIKDRKLL_					0	0	0		ENST00000505226.1_1_6:83748090-83767722:-|nuORF;ENST00000237186.10_1_6:83602743-83775466:-|nuORF;ENSG00000118420|ENST00000369747|UBE3D	ENST00000505226.1_1_6:83748090-83767722:-|nuORF	ENST00000505226.1_1_6:83748090-83767722:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.2914733886719	2	499.839677	997.664801	1.973	0.0009862	-0.55186	-0.00027584	1.4212	0.00071036	499.83930031874365	92.753	0.41326	92.753	92.555	92.968	0					13	9	2	0	0	0	0.028476	1	10052	10052		47.916	8.8941	1	336580			18423	3305	15022	15043	20442	20442					0.16587489507651298
IIKEFILSS	9	Unmodified	_IIKEFILSS_					0	0	0		tr|A0A7D6VTX3|A0A7D6VTX3_9CLOTFlagellarhook-lengthcontrolproteinFliKOS=ClostridiumintestinaleOX=36845GN=HZF06_04625PE=4SV=1	tr|A0A7D6VTX3|A0A7D6VTX3_9CLOTFlagellarhook-lengthcontrolproteinFliKOS=ClostridiumintestinaleOX=36845GN=HZF06_04625PE=4SV=1	tr|A0A7D6VTX3|A0A7D6VTX3_9CLOTFlagellarhook-lengthcontrolproteinFliKOS=ClostridiumintestinaleOX=36845GN=HZF06_04625PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.3140258789062	2	525.3157	1048.61685	1.0099	0.00053051	-1.2808	-0.00067285	-0.27096	-0.00014234	525.3148640808799	124.51	0.88444	123.45	123.12	124	-1.0519					27	16	2	0	0	0	0.027462	1	9709	9709		25.45	3.7644	1	23039			18424	35149	15023	15044	20443	20443					0.09448370796940253
IIKEVIIL	8	Unmodified	_IIKEVIIL_					0	0	0			REV__tr|A0A7D6ZU26|A0A7D6ZU26_9CLOTCarboxypeptidaseregulatory-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22490PE=4SV=1	REV__tr|A0A7D6ZU26|A0A7D6ZU26_9CLOTCarboxypeptidaseregulatory-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22490PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	470.8269958496094	2	470.825704	939.636855	0.66106	0.00031124	-0.10183	-4.7944E-05	0.55923	0.0002633	470.82550127095874	161.06	3.0909	161.06	159.47	162.56	0					174	61	3	0	0	0	0.23117	1	18907	18907		119.56	4.0978	1	597670	+		18425	32212	15024	15045	20444	20444					0.16462166527560385
IIKGGKLVGY	10	Unmodified	_IIKGGKLVGY_					0	0	0		tr|A0A553SS85|A0A553SS85_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_02625PE=3SV=1	tr|A0A553SS85|A0A553SS85_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_02625PE=3SV=1	tr|A0A553SS85|A0A553SS85_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_02625PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.303466796875	2	524.331685	1046.64882	-0.57827	-0.0003032	0.11532	6.0464E-05	-0.46295	-0.00024274	524.3316348776219	73.964	0.79118	71.476	71.225	72.016	-2.4873					25	15	2	0	0	0	0.026747	1	3630	3630		115.46	14.247	1	17565			18426	34342	15025	15046	20445	20445					0.1273578327075029
IIKGGKLVGY	10	Unmodified	_IIKGGKLVGY_					0	0	0		tr|A0A553SS85|A0A553SS85_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_02625PE=3SV=1	tr|A0A553SS85|A0A553SS85_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_02625PE=3SV=1	tr|A0A553SS85|A0A553SS85_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_02625PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.3045654296875	2	524.331685	1046.64882	-0.57602	-0.00030203	0.059853	3.1383E-05	-0.51617	-0.00027064	524.331631239074	74.972	0.57741	71.741	71.532	72.109	-3.2308					16	11	2	0	0	0	0.026723	1	5883	5883		68.787	0	1	23323			18427	34342	15025	15046	20446	20446					0.1273578327075029
IIKHQTLTTL	10	Unmodified	_IIKHQTLTTL_					0	0	0			REV__nc|ENSG00000197134|Q9Y2Q1-4|ZNF257	REV__nc|ENSG00000197134|Q9Y2Q1-4|ZNF257	MULTI-MSMS	OvCa9_classI_Rep3	3	584.3555908203125	2	584.358431	1166.70231	-4.6254	-0.0027029	1.1397	0.00066599	-3.4857	-0.0020369	584.3589865391973	145.25	4.5766	144.28	142.9	147.48	-0.97299					233	91	4	0	0	0	0.82648	1	12313	12313		15.642	0.77694	1	156220	+		18428	22894	15026	15047	20447	20447					0.1256253598260173
IIKHTSQACI	10	Unmodified	_IIKHTSQACI_					0	0	0			REV__tr|A0A7D6VY02|A0A7D6VY02_9CLOTAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_14770PE=3SV=1	REV__tr|A0A7D6VY02|A0A7D6VY02_9CLOTAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_14770PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	557.3120727539062	2	557.307884	1112.60121	2.6416	0.0014722	2.8643	0.0015963	5.5059	0.0030685	557.3093954369082	113.18	0.8215	113.18	112.79	113.61	0					74	19	5	0	0	0	0.46756	1	12927	12927		58.782	0.97068	1	8672400	+		18429	31799	15027	15048	20448	20448					0.049417610082628016
IIKIEVTT	8	Unmodified	_IIKIEVTT_					0	0	0			REV__ENSG00000162896|ENST00000356495|PIGR	REV__ENSG00000162896|ENST00000356495|PIGR	MULTI-MSMS	OvCa9_classI_Rep2	2	458.7869873046875	2	458.789318	915.564084	-2.0925	-0.00096003	-0.91741	-0.0004209	-3.0099	-0.0013809	458.7887619770069	147.55	1.9467	147.32	146.82	148.77	-0.22697					104	38	4	0	0	0	0.75661	1	14906	14906		19.36	0	1	613710	+		18430	20789	15028	15049	20449	20449					0.10292412734145273
IIKLSKRLY	9	Unmodified	_IIKLSKRLY_					0	0	0			REV__PRAMEF1|p.L340Pfs*53|1|0.04|ENSG00000116721|chr1:12795587-12795588|-/G|frameshift_variant	REV__PRAMEF1|p.L340Pfs*53|1|0.04|ENSG00000116721|chr1:12795587-12795588|-/G|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	567.375244140625	2	567.373884	1132.73321	-0.069057	-3.9181E-05	0.0012078	6.8525E-07	-0.067849	-3.8496E-05	567.3737886945559	64.496	0.85792	64.496	64.253	65.111	0					53	20	4	0	0	0	0.48324	1	5855	5855		44.117	6.3053	1	4451900	+		18431	18315	15029	15050	20450	20450					0.17215734087517376
IIKLSKRLY	9	Unmodified	_IIKLSKRLY_					0	0	0			REV__PRAMEF1|p.L340Pfs*53|1|0.04|ENSG00000116721|chr1:12795587-12795588|-/G|frameshift_variant	REV__PRAMEF1|p.L340Pfs*53|1|0.04|ENSG00000116721|chr1:12795587-12795588|-/G|frameshift_variant	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	567.373884	1132.73321	-0.069057	-3.9181E-05	0.0012078	6.8525E-07	-0.067849	-3.8496E-05	567.3737886945559	64.496	0.85792	64.496	64.253	65.111	0	0	0	NaN	44.117	53	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4451900	+		18432	18315	15029	15050							0.17215734087517376
IIKLYEKHS	9	Unmodified	_IIKLYEKHS_					0	0	0			REV__tr|A0A7D6VPP2|A0A7D6VPP2_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_17630PE=4SV=1	REV__tr|A0A7D6VPP2|A0A7D6VPP2_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_17630PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	565.8336181640625	2	565.832049	1129.64954	2.555	0.0014457	2.8033	0.0015862	5.3583	0.0030319	565.8334984368654	99.635	2.9756	99.635	99.276	102.25	0					141	70	4	0	0	0	0.041116	1	10988	10988		125.81	13.403	1	23873000	+		18433	31263	15030	15051	20451	20451					0.089905779198034
IIKNRSGAL	9	Unmodified	_IIKNRSGAL_					0	0	0			REV__nc|ENSG00000165494|O94913|PCF11	REV__nc|ENSG00000165494|O94913|PCF11	MULTI-MSMS	OvCa9_classI_Rep3	3	486.30426025390625	2	486.303458	970.592364	0.78572	0.0003821	2.8872	0.0014041	3.673	0.0017862	486.30477333878326	121.54	2.2543	120.51	120.01	122.27	-1.0286					108	42	4	0	0	0	0.68424	1	9360	9360		21.96	2.5999	1	892460	+		18434	21093	15031	15052	20452	20452					0.10589155434081476
IIKPLPAIV	9	Unmodified	_IIKPLPAIV_					0	0	0		tr|A0A7D6ZUE5|A0A7D6ZUE5_9CLOTNAD(P)/FAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23815PE=4SV=1	tr|A0A7D6ZUE5|A0A7D6ZUE5_9CLOTNAD(P)/FAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23815PE=4SV=1	tr|A0A7D6ZUE5|A0A7D6ZUE5_9CLOTNAD(P)/FAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23815PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	482.3027648925781	2	482.333696	962.652839	0.20521	9.8979E-05	-0.57935	-0.00027944	-0.37414	-0.00018046	482.333300642485	122.59	0.54557	121.22	121.01	121.56	-1.3666					13	10	2	0	0	0	0.027462	1	11563	11563		31.955	0	1	13024			18435	35773	15032	15053	20453	20453					0.1700187276444467
IIKQKLILL	9	Unmodified	_IIKQKLILL_					0	0	0		ENSG00000226650|ENST00000435029|KIF4B	ENSG00000226650|ENST00000435029|KIF4B	ENSG00000226650|ENST00000435029|KIF4B	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2882690429688	2	541.389003	1080.76345	1.2788	0.00069232	0.44976	0.00024349	1.7285	0.00093582	541.3891192200911	111.4	0.67722	111.4	111.16	111.83	0					24	14	2	0	0	0	0.027462	1	12707	12707		25.45	0	1	98785			18436	9272	15033	15054	20454	20454					0.22630092752706332
IIKREWKQ	8	Unmodified	_IIKREWKQ_					0	0	0			REV__nc|ENSG00000150687|O95084-2|PRSS23	REV__nc|ENSG00000150687|O95084-2|PRSS23	MULTI-MSMS	OvCa9_classI_Rep2	2	550.8328247070312	2	550.832383	1099.65021	0.7561	0.00041648	-0.8481	-0.00046716	-0.092004	-5.0679E-05	550.831810295029	31.273	0.88647	28.563	28.347	29.233	-2.7097					37	17	3	0	0	0	0.73494	1	949	949		34.173	1.3601	1	181500	+		18437	20199	15034	15055	20455	20455					0.10437417359503343
IIKSITTDEVL	11	Unmodified	_IIKSITTDEVL_					0	0	0			REV__tr|A0A553SRK4|A0A553SRK4_NIACICd(2+)-exportingATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	REV__tr|A0A553SRK4|A0A553SRK4_NIACICd(2+)-exportingATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	615.8269653320312	2	616.360836	1230.70712	-0.23287	-0.00014353	-4.1205	-0.0025397	-4.3534	-0.0026832	616.3577358062047	80.239	0.29856	78.543	78.37	78.668	-1.6951					6	5	2	0	0	0	0.025594	1	6761	6761		33.922	0	1	10753	+		18438	30739	15035	15056	20456	20456					0.1009937533469838
IIKVAAKSM	9	Unmodified	_IIKVAAKSM_					0	0	0			REV__tr|A0A553SJ94|A0A553SJ94_NIACILacIfamilyDNA-bindingtranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_16350PE=4SV=1	REV__tr|A0A553SJ94|A0A553SJ94_NIACILacIfamilyDNA-bindingtranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_16350PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	480.8022766113281	2	480.799163	959.583773	1.2048	0.00057928	4.4748	0.0021515	5.6796	0.0027308	480.8012000041993	155.2	0.90724	155.2	154.83	155.73	0					48	17	4	0	0	0	0.62352	1	18176	18176		29.15	0.89528	1	491110	+		18439	29979	15036	15057	20457	20457					0.10236465473246881
IILAKNKPI	9	Unmodified	_IILAKNKPI_					0	0	0			REV__tr|A0A7D6ZXD8|A0A7D6ZXD8_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22595PE=4SV=1	REV__tr|A0A7D6ZXD8|A0A7D6ZXD8_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22595PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.34063720703125	2	505.342052	1008.66955	2.4457	0.0012359	-3.7738	-0.0019071	-1.3281	-0.00067113	505.33994217432223	135.22	1.8729	133.68	133.11	134.99	-1.5437					124	33	5	0	0	0	0.34496	1	13146	13146		57.811	4.4598	1	1621800	+		18440	32328	15037	15058	20458	20458					0.16556373650416845
IILARAILRKP	11	Unmodified	_IILARAILRKP_					0	0	0		tr|A0A553SUD8|A0A553SUD8_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06810PE=4SV=1	tr|A0A553SUD8|A0A553SUD8_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06810PE=4SV=1	tr|A0A553SUD8|A0A553SUD8_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06810PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	632.431396484375	2	632.434807	1262.85506	-5.7395	-0.0036299	-0.067111	-4.2443E-05	-5.8066	-0.0036723	632.4345273657251	163.44	1.2114	163.21	162.72	163.93	-0.22696					106	40	3	0	0	0	0.72582	2	16622	16622;16640		3.1592	0	1	356230			18441	34598	15038	15059	20459;20460	20459					0.23414776169852303
IILEEGKEILV	11	Unmodified	_IILEEGKEILV_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	628.377197265625	2	628.379029	1254.7435	0.32372	0.00020342	-0.6597	-0.00041454	-0.33598	-0.00021112	628.3785311364716	112.24	1.7089	110.73	110.42	112.13	-1.5111					61	33	2	0	0	0	0.064268	2	10380	10365;10380		106.88	21.018	1	233850			18442	7317	15039	15060	20461;20462	20462					0.1263225223142399
IILEEGKEILV	11	Unmodified	_IILEEGKEILV_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	628.379029	1254.7435	-0.45284	-0.00028456	0.25792	0.00016207	-0.19492	-0.00012248	628.3791633958174	111.02	1.8246	110.88	110.58	112.41	-0.13961	0.095274	0.0014859	NaN	106.88	79	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178600			18443	7317	15039	15060							0.1263225223142399
IILEEGKEILV	11	Unmodified	_IILEEGKEILV_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	628.379029	1254.7435	2.2764	0.0014305	-2.459	-0.0015452	-0.18258	-0.00011473	628.3773729173939	111.85	1.5276	110.75	110.45	111.98	-1.1038	-0.03677	-0.0019286	NaN	106.88	56	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185210			18444	7317	15039	15060							0.1263225223142399
IILEGCRFR	9	Carbamidomethyl (C)	_IILEGC(Carbamidomethyl (C))RFR_	IILEGC(1)RFR		IILEGC(55)RFR		0	1	0			REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MSMS	OvCa9_classI_Rep4_	4	582.31884765625	2	582.321325	1162.6281	-1.8376	-0.0010701	-2.0661	-0.0012031	-3.9037	-0.0022732	582.319856506265	95.632	1.4164	93.164	92.761	94.177	-2.4685					77	27	4	0	0	0	0.37135	1	8430	8430		54.776	6.8168	1	439450	+		18445	20863	15040	15061	20463	20463	229				0.05328869619438592
IILENHCIL	9	Unmodified	_IILENHCIL_					0	0	0		ENST00000315368.7_1_4:25411380-25415314:+|nuORF	ENST00000315368.7_1_4:25411380-25415314:+|nuORF	ENST00000315368.7_1_4:25411380-25415314:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.8619384765625	2	534.299527	1066.5845	1.6383	0.00087535	-3.0057	-0.0016059	-1.3674	-0.00073059	534.2977206555695	112.44	0.45492	112.44	112.16	112.61	0					12	9	2	0	0	0	0.027433	1	12817	12817		51.335	17.82	1	75104			18446	10333	15041	15062	20464	20464					0.053872601223019956
IILEPKSMA	9	Unmodified	_IILEPKSMA_					0	0	0			REV__ENSG00000197472|ENST00000339986|ZNF695	REV__ENSG00000197472|ENST00000339986|ZNF695	MULTI-MSMS	OvCa9_classI_Rep2	2	501.2903747558594	2	501.288628	1000.5627	-0.80197	-0.00040202	4.3304	0.0021708	3.5285	0.0017688	501.2906816095173	135.63	4.8104	135.4	133.71	138.52	-0.22697					221	98	3	0	0	0	0.63422	1	13697	13697		27.882	2.4321	1	70595	+		18447	22928	15042	15063	20465	20465					0.06244455373735036
IILGLVMW	8	Unmodified	_IILGLVMW_					0	0	0		tr|A0A7D6ZI58|A0A7D6ZI58_9CLOTCarbohydrateABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02955PE=3SV=1	tr|A0A7D6ZI58|A0A7D6ZI58_9CLOTCarbohydrateABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02955PE=3SV=1	tr|A0A7D6ZI58|A0A7D6ZI58_9CLOTCarbohydrateABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02955PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.2669372558594	2	472.785524	943.556496	0.18652	8.8183E-05	-0.10944	-5.1744E-05	0.077074	3.6439E-05	472.78488211512996	31.633	0.29779	31.633	31.509	31.807	0					7	5	2	0	0	0	0.028476	1	1324	1324		16.705	0	1	14737			18448	35604	15043	15064	20466	20466					0.08245981932873292
IILGTKIFY	9	Unmodified	_IILGTKIFY_					0	0	0			REV__ENST00000471417.5_1_1:87599943-87600129:+|nuORF	REV__ENST00000471417.5_1_1:87599943-87600129:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.314208984375	2	534.328611	1066.64267	-2.1892	-0.0011697	-2.3316	-0.0012458	-4.5208	-0.0024156	534.3271939415198	117.86	2.0846	117.71	116.75	118.83	-0.14755					33	22	3	0	0	0	0.027462	1	11334	11334		27.882	3.6795	1	56150	+		18449	26282	15044	15065	20467	20467					0.1120126503924439
IILGTKIFY	9	Unmodified	_IILGTKIFY_					0	0	0			REV__ENST00000471417.5_1_1:87599943-87600129:+|nuORF	REV__ENST00000471417.5_1_1:87599943-87600129:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	534.328611	1066.64267	0.72883	0.00038943	-5.0809	-0.0027149	-4.352	-0.0023254	534.325786921603	118.62	1.3378	117.59	116.74	118.08	-1.0271	-0.034015	-0.0024585	NaN	44.117	34	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42346	+		18450	26282	15044	15065							0.1120126503924439
IILIFSTSSSN	11	Unmodified	_IILIFSTSSSN_					0	0	0			REV__tr|A0A7D6VRD9|A0A7D6VRD9_9CLOTBarstarfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06470PE=4SV=1	REV__tr|A0A7D6VRD9|A0A7D6VRD9_9CLOTBarstarfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06470PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	591.3226318359375	2	591.324254	1180.63395	0.49894	0.00029503	-2.8426	-0.0016809	-2.3437	-0.0013859	591.3225047391371	42.256	1.1351	39.547	39.275	40.41	-2.7097					60	22	4	0	0	0	0.71191	1	2273	2273		25.574	0.12388	1	307350	+		18451	31406	15045	15066	20468	20468					0.0508624661210888
IILILLQGDR	10	Unmodified	_IILILLQGDR_					0	0	0		nc|ENSG00000122481|Q9Y3V2-2|RWDD3;ENST00000495272.5_1_1:95705425-95712423:+|nuORF;ENSG00000122481|ENST00000370202|RWDD3	nc|ENSG00000122481|Q9Y3V2-2|RWDD3	nc|ENSG00000122481|Q9Y3V2-2|RWDD3	MULTI-MSMS	OvCa9_classI_Rep2	2	577.3682250976562	2	577.368798	1152.72304	-0.0015386	-8.8833E-07	-0.31024	-0.00017912	-0.31177	-0.00018001	577.368591979319	125.62	1.9266	125.38	125.01	126.94	-0.2359					114	38	5	0	0	0	0.5675	1	12286	12286		45.972	3.5761	1	983740			18452	3533	15046	15067	20469	20469					0.1527912636227029
IILINNSSL	9	Unmodified	_IILINNSSL_					0	0	0			REV__tr|A0A7D6ZXN7|A0A7D6ZXN7_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13875PE=4SV=1	REV__tr|A0A7D6ZXN7|A0A7D6ZXN7_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13875PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.314697265625	2	493.797675	985.580796	1.5793	0.00077985	-2.885	-0.0014246	-1.3057	-0.00064477	493.79415706380104	107.21	0.54722	107.21	106.93	107.48	0					24	12	3	0	0	0	0.027462	1	12054	12054		12.207	0	1	287020	+		18453	32340	15047	15068	20470	20470					0.08742913620108084
IILKGGIDE	9	Unmodified	_IILKGGIDE_					0	0	0			REV__tr|A0A7D7A2L4|A0A7D7A2L4_9CLOTSignaltransductionhistidinekinasesubgroup3dimerisationandphosphoacceptordomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20510PE=4SV=1	REV__tr|A0A7D7A2L4|A0A7D7A2L4_9CLOTSignaltransductionhistidinekinasesubgroup3dimerisationandphosphoacceptordomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20510PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	479.28289794921875	2	479.2844	956.554247	1.5527	0.00074419	1.099	0.00052672	2.6517	0.0012709	479.28453568719266	149.24	0.52629	149.24	148.92	149.44	0					24	10	4	0	0	0	0.46377	1	17468	17468		45.952	1.8352	1	65726	+		18454	32543	15048	15069	20471	20471					0.07423224728768218
IILKSLKSHE	10	Unmodified	_IILKSLKSHE_					0	0	0			REV__ENSG00000127311|ENST00000247815|HELB	REV__ENSG00000127311|ENST00000247815|HELB	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3563232421875	2	584.358431	1166.70231	-2.312	-0.0013511	-1.149	-0.00067141	-3.461	-0.0020225	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.7759	1	14638	14638		21.96	1.013	1	180810	+		18455	18808	15049	15070	20472	20472					0.12562535982624468
IILLELPKV	9	Unmodified	_IILLELPKV_					0	0	0		ENST00000337339.6_1_X:11785039-11785279:+|nuORF	ENST00000337339.6_1_X:11785039-11785279:+|nuORF	ENST00000337339.6_1_X:11785039-11785279:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.7626342773438	2	519.352086	1036.68962	-1.6245	-0.00084368	-1.4281	-0.00074167	-3.0526	-0.0015854	519.3512943612103	44.06	0.34882	44.06	43.866	44.215	0					11	7	2	0	0	0	0.027462	1	2938	2938		12.959	0.75233	1	174510			18456	10524	15050	15071	20473	20473					0.1727412459038078
IILLIITTLY	10	Unmodified	_IILLIITTLY_					0	0	0		tr|A0A553SSP7|A0A553SSP7_NIACIYwiC-likeproteinOS=NialliacirculansOX=1397GN=CEQ21_03390PE=4SV=1	tr|A0A553SSP7|A0A553SSP7_NIACIYwiC-likeproteinOS=NialliacirculansOX=1397GN=CEQ21_03390PE=4SV=1	tr|A0A553SSP7|A0A553SSP7_NIACIYwiC-likeproteinOS=NialliacirculansOX=1397GN=CEQ21_03390PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.309326171875	2	588.386125	1174.7577	0.61874	0.00036406	1.8554	0.0010917	2.4742	0.0014558	588.387102072323	81.393	0.24548	81.393	81.248	81.493	0					7	5	2	0	0	0	0.027334	1	8392	8392		11.511	0	1	133200			18457	34400	15051	15072	20474	20474					0.17730949450356093
IILLKQGPPGT	11	Unmodified	_IILLKQGPPGT_					0	0	0			REV__ENSG00000197483|ENST00000598519|ZNF628	REV__ENSG00000197483|ENST00000598519|ZNF628	MULTI-MSMS	OvCa9_classI_Rep2	2	568.8544921875	2	568.855524	1135.69649	-5.375	-0.0030576	2.0179	0.0011479	-3.3571	-0.0019097	568.8565433281535	160.72	1.3933	160.5	160.18	161.57	-0.22696					89	27	5	0	0	0	0.68684	2	16353	16353;16420		34.173	5.023	1	747650	+		18458	22929	15052	15073	20475;20476	20475					0.1340743747093711
IILLKQGPPGT	11	Unmodified	_IILLKQGPPGT_					0	0	0			REV__ENSG00000197483|ENST00000598519|ZNF628	REV__ENSG00000197483|ENST00000598519|ZNF628	MULTI-MSMS	OvCa9_classI_Rep3	3	568.8536376953125	2	568.855524	1135.69649	-7.0365	-0.0040027	3.4991	0.0019905	-3.5374	-0.0020123	568.857375140279	161.4	1.8223	160.03	159.69	161.51	-1.3692					107	37	5	0	0	0	0.68263	2	14037	13998;14037		35.618	6.4687	1	827460	+		18459	22929	15052	15073	20477;20478	20478					0.1340743747093711
IILLKQGPPGT	11	Unmodified	_IILLKQGPPGT_					0	0	0			REV__ENSG00000197483|ENST00000598519|ZNF628	REV__ENSG00000197483|ENST00000598519|ZNF628	MULTI-MSMS	OvCa9_classI_Rep4_	4	568.8532104492188	2	568.855524	1135.69649	-6.0828	-0.0034602	2.2546	0.0012825	-3.8282	-0.0021777	568.856661515311	161.9	1.6548	160.28	159.93	161.59	-1.6239					133	43	5	0	0	0	0.70865	1	16012	16012		26.693	4.733	1	804000	+		18460	22929	15052	15073	20479	20479					0.1340743747093711
IILLSFPAK	9	Unmodified	_IILLSFPAK_					0	0	0		ENST00000311066.9_1_1:14109046-14109127:+|nuORF	ENST00000311066.9_1_1:14109046-14109127:+|nuORF	ENST00000311066.9_1_1:14109046-14109127:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.6952819824219	2	501.323328	1000.6321	-0.20347	-0.00010201	-4.0971	-0.002054	-4.3006	-0.002156	501.3211155638403	30.391	0.24662	30.391	30.236	30.483	0					7	4	2	0	0	0	0.027462	1	1154	1154		21.96	3.6355	1	19169			18461	10290	15053	15074	20480	20480					0.13181282384800852
IILNHVIR	8	Unmodified	_IILNHVIR_					0	0	0		nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2	nc|ENSG00000062598|Q96JJ3-3|ELMO2	nc|ENSG00000062598|Q96JJ3-3|ELMO2	MULTI-MSMS	OvCa9_classI_Rep2	2	489.3138427734375	2	489.316369	976.618185	-2.9034	-0.0014207	-1.3918	-0.00068104	-4.2952	-0.0021017	489.3155696010777	150.8	1.5265	150.57	150.17	151.7	-0.22696					77	30	4	0	0	0	0.75991	1	15305	15305		21.702	1.2205	1	380370			18462	1277	15054	15075	20481	20481					0.12894049676378927
IILNHVIR	8	Unmodified	_IILNHVIR_					0	0	0		nc|ENSG00000062598|Q96JJ3-3|ELMO2;ENSG00000062598|ENST00000290246|ELMO2	nc|ENSG00000062598|Q96JJ3-3|ELMO2	nc|ENSG00000062598|Q96JJ3-3|ELMO2	MULTI-MSMS	OvCa9_classI_Rep3	3	489.3138122558594	2	489.316369	976.618185	-5.0625	-0.0024771	0.75357	0.00036874	-4.3089	-0.0021084	489.3166161919068	151.03	1.2523	150.08	149.76	151.01	-0.95647					68	24	4	0	0	0	0.74394	1	12847	12847		13.775	0.81615	1	299480			18463	1277	15054	15075	20482	20482					0.12894049676378927
IILRRKHGDS	10	Unmodified	_IILRRKHGDS_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8551635742188	2	597.856921	1193.69929	-1.9041	-0.0011384	0.86104	0.00051478	-1.0431	-0.00062361	597.8573316932594	144.83	3.9651	143.86	141.71	145.68	-0.97301					192	79	4	0	0	0	0.73378	1	12177	12177		26.693	1.1189	1	187110	+		18464	28942;32737;28943	15055	15076	20483	20483					0.11018705648461946
IILSDNTLI	9	Unmodified	_IILSDNTLI_					0	0	0		L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|209|1|anti-sense	L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|209|1|anti-sense	L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|209|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	501.29669189453125	2	501.297507	1000.58046	-1.7009	-0.00085264	1.4294	0.00071655	-0.27147	-0.00013609	501.29808755011607	120.33	1.4803	120.16	119.84	121.32	-0.17137					84	29	5	0	0	0	0.27001	1	11641	11641		66.429	2.222	1	488720			18465	14563	15056	15077	20484	20484					0.08019493900246744
IILSIIVVF	9	Unmodified	_IILSIIVVF_					0	0	0		tr|A0A553SMX0|A0A553SMX0_NIACIPhospholipaseOS=NialliacirculansOX=1397GN=CEQ21_23345PE=4SV=1	tr|A0A553SMX0|A0A553SMX0_NIACIPhospholipaseOS=NialliacirculansOX=1397GN=CEQ21_23345PE=4SV=1	tr|A0A553SMX0|A0A553SMX0_NIACIPhospholipaseOS=NialliacirculansOX=1397GN=CEQ21_23345PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.81646728515625	2	508.841354	1015.66815	-0.22701	-0.00011551	4.2551	0.0021652	4.0281	0.0020496	508.8437697508967	75.948	0.33453	73.009	72.888	73.222	-2.9389					11	6	3	0	0	0	0.027462	1	5995	5995		19.36	0	1	40558			18466	33878	15057	15078	20485	20485					0.16094739561674487
IILSVFIPS	9	Unmodified	_IILSVFIPS_					0	0	0		ENST00000495933.1_1_2:46842057-46842303:-|nuORF;nc|ENSG00000151665|Q07326-2|PIGF;ENSG00000151665|ENST00000281382|PIGF	ENST00000495933.1_1_2:46842057-46842303:-|nuORF	ENST00000495933.1_1_2:46842057-46842303:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.7701110839844	2	494.807511	987.600469	-0.11939	-5.9075E-05	-4.388	-0.0021712	-4.5074	-0.0022303	494.8051722304282	52.553	0.5257	52.553	52.347	52.873	0					22	11	3	0	0	0	0.027462	1	4127	4127		30.504	0	1	342980			18467	5574	15058	15079	20486	20486					0.10617289630863525
IILSVLLTNKL	11	Unmodified	_IILSVLLTNKL_					0	0	0			REV__tr|A0A7D7AGQ8|A0A7D7AGQ8_9CLOTVanZfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09635PE=4SV=1	REV__tr|A0A7D7AGQ8|A0A7D7AGQ8_9CLOTVanZfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09635PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	409.60845947265625	3	409.607596	1225.80096	1.1396	0.00046679	-0.24169	-9.9E-05	0.89792	0.00036779	409.6074659919173	107.95	5.8573	106.76	106.27	112.13	-1.1978					409	114	4	0	0	0	0.57194	1	7759	7759		47.228	0.7709	1	1037400	+		18468	32725	15059	15080	20487	20487					0.19709139227666128
IILSYVDSH	9	Unmodified	_IILSYVDSH_					0	0	0		nc|ENSG00000204700|O76002|OR2J2;ENSG00000204700|ENST00000641417|OR2J2	nc|ENSG00000204700|O76002|OR2J2	nc|ENSG00000204700|O76002|OR2J2	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.78369140625	2	523.779482	1045.54441	-0.11714	-6.1356E-05	-4.02	-0.0021056	-4.1372	-0.002167	523.7775021682955	72.743	0.66255	72.743	72.45	73.113	0					62	16	5	0	0	0	0.027462	1	7152	7152		12.959	2.6939	1	20421000			18469	9022	15060	15081	20488	20488					0.023460367233838042
IILSYVRILY	10	Unmodified	_IILSYVRILY_					0	0	0		ENSG00000183269|ENST00000537935|OR52E8	ENSG00000183269|ENST00000537935|OR52E8	ENSG00000183269|ENST00000537935|OR52E8	MULTI-SECPEP	OvCa99_classI_Rep5	1	627.7462768554688	2	626.886824	1251.7591	1.0706	0.00067113	4.0873	0.0025623	5.1579	0.0032334	626.8893865758307	139.25	0.24046	139.25	139.17	139.41	0					5	4	2	0	0	0	0.026871	1	16269	16269		21.96	0	1	58452			18470	8060	15061	15082	20489	20489					0.14328583539145257
IILVLPMP	8	Unmodified	_IILVLPMP_					0	0	0			REV__ENST00000526188.5_1_1:156756895-156764553:+|nuORF	REV__ENST00000526188.5_1_1:156756895-156764553:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	448.2772216796875	2	448.2879	894.561247	6.0405	0.0027079	-0.69927	-0.00031348	5.3412	0.0023944	448.28869928359836	25.396	0.14944	22.686	22.579	22.728	-2.7097					4	2	2	0	0	0	0.028476	1	249	249		10.185	5.0979	1	4841.7	+		18471	27133	15062	15083	20490	20490					0.10974866075628142
IILVYLLIN	9	Unmodified	_IILVYLLIN_					0	0	0		ENSG00000100385|ENST00000216223|IL2RB	ENSG00000100385|ENST00000216223|IL2RB	ENSG00000100385|ENST00000216223|IL2RB	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3223876953125	2	537.352086	1072.68962	2.2248	0.0011955	0.73367	0.00039424	2.9585	0.0015897	537.3534220759535	102.9	0.21274	102.9	102.76	102.98	0					7	4	2	0	0	0	0.027462	1	11494	11494		25.45	13.939	1	219280			18472	2060	15063	15084	20491	20491					0.1561812459040084
IILYNKVISD	10	Unmodified	_IILYNKVISD_					0	0	0		tr|A0A7D6ZQ89|A0A7D6ZQ89_9CLOTTPMdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23400PE=4SV=1	tr|A0A7D6ZQ89|A0A7D6ZQ89_9CLOTTPMdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23400PE=4SV=1	tr|A0A7D6ZQ89|A0A7D6ZQ89_9CLOTTPMdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23400PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	589.343505859375	2	589.344989	1176.67542	-5.1334	-0.0030254	1.6192	0.00095427	-3.5142	-0.0020711	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.72319	1	12546	12546		27.882	3.3631	1	589610			18473	35699	15064	15085	20492	20492					0.09415427371436635
IIMGIVIIM	9	2 Oxidation (M)	_IIM(Oxidation (M))GIVIIM(Oxidation (M))_		IIM(1)GIVIIM(1)		IIM(60)GIVIIM(60)	0	0	2		ENSG00000184811|ENST00000333813|TRARG1	ENSG00000184811|ENST00000333813|TRARG1	ENSG00000184811|ENST00000333813|TRARG1	MULTI-MSMS	OvCa9_classI_Rep3	3	517.8025512695312	2	517.803057	1033.59156	0.3222	0.00016684	-0.55854	-0.00028921	-0.23634	-0.00012238	517.8026927132421	109.38	1.1558	108.23	107.93	109.08	-1.1444					50	21	4	0	0	0	0.32242	1	7856	7856		60.404	17.929	1	324330			18474	8191	15065	15086	20493	20493		251;252			0.07610856678525124
IIMGIVIIM	9	2 Oxidation (M)	_IIM(Oxidation (M))GIVIIM(Oxidation (M))_		IIM(1)GIVIIM(1)		IIM(60)GIVIIM(60)	0	0	2		ENSG00000184811|ENST00000333813|TRARG1	ENSG00000184811|ENST00000333813|TRARG1	ENSG00000184811|ENST00000333813|TRARG1	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.8031005859375	2	517.803057	1033.59156	0.45541	0.00023581	-0.5062	-0.00026211	-0.050788	-2.6298E-05	517.802767072594	109.93	1.4213	108.32	108.07	109.49	-1.6011					48	26	3	0	0	0	0.32242	1	10098	10098		60.404	10.379	1	324680			18475	8191	15065	15086	20494	20494		251;252			0.07610856678525124
IIMLIKISI	9	Unmodified	_IIMLIKISI_					0	0	0			REV__tr|A0A553SF95|A0A553SF95_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_08455PE=3SV=1	REV__tr|A0A553SF95|A0A553SF95_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_08455PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.8133544921875	2	522.348489	1042.68242	1.7272	0.0009022	0.066478	3.4725E-05	1.7937	0.00093693	522.3483493400184	137.23	0.72488	137.23	137.01	137.74	0					28	14	3	0	0	0	0.027462	1	15998	15998		27.882	7.8855	1	108620	+		18476	29552	15066	15087	20495	20495					0.16279068718290546
IIMPHNIYL	9	Unmodified	_IIMPHNIYL_					0	0	0		ENST00000469449.1_1_2:219252516-219252801:+|nuORF;ENST00000475225.5_1_2:219251916-219252801:+|nuORF;ENST00000494322.5_1_2:219247091-219256951:+|nuORF;nc|ENSG00000018280|P49279-2|SLC11A1;ENSG00000018280|ENST00000233202|SLC11A1	ENST00000469449.1_1_2:219252516-219252801:+|nuORF	ENST00000469449.1_1_2:219252516-219252801:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	557.3113403320312	2	557.309895	1112.60524	2.6416	0.0014722	-0.74474	-0.00041505	1.8968	0.0010571	557.3093954369082	113.18	0.8215	113.18	112.79	113.61	0					74	19	5	0	0	0	0.018995	2	12880	12880;12904		148.21	41.791	1	8672400			18477	1012	15067	15088	20496;20497	20496					0.053438505019585136
IIMPHNIYL	9	Unmodified	_IIMPHNIYL_					0	0	0		ENST00000469449.1_1_2:219252516-219252801:+|nuORF;ENST00000475225.5_1_2:219251916-219252801:+|nuORF;ENST00000494322.5_1_2:219247091-219256951:+|nuORF;nc|ENSG00000018280|P49279-2|SLC11A1;ENSG00000018280|ENST00000233202|SLC11A1	ENST00000469449.1_1_2:219252516-219252801:+|nuORF	ENST00000469449.1_1_2:219252516-219252801:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	557.310546875	2	557.309895	1112.60524	1.2004	0.00066899	-1.0846	-0.00060445	0.1158	6.4535E-05	557.3090127399616	112.67	2.0232	112.55	112.18	114.2	-0.12174					94	40	4	0	0	0	0.085069	3	10674	10661;10667;10674		101.21	13.482	1	394630			18478	1012	15067	15088	20498;20499;20500	20500					0.053438505019585136
IIMPHNIYL	9	Unmodified	_IIMPHNIYL_					0	0	0		ENST00000469449.1_1_2:219252516-219252801:+|nuORF;ENST00000475225.5_1_2:219251916-219252801:+|nuORF;ENST00000494322.5_1_2:219247091-219256951:+|nuORF;nc|ENSG00000018280|P49279-2|SLC11A1;ENSG00000018280|ENST00000233202|SLC11A1	ENST00000469449.1_1_2:219252516-219252801:+|nuORF	ENST00000469449.1_1_2:219252516-219252801:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	557.3136596679688	2	557.309895	1112.60524	0.29489	0.00016435	-0.26706	-0.00014884	0.027831	1.551E-05	557.3095133240754	113.55	1.9738	112.48	112.15	114.12	-1.0753					96	38	4	0	0	0	0.098892	2	8340	8340;8346		97.473	7.1029	1	433950			18479	1012	15067	15088	20501;20502	20501					0.053438505019585136
IIMPHNIYL	9	Unmodified	_IIMPHNIYL_					0	0	0		ENST00000469449.1_1_2:219252516-219252801:+|nuORF;ENST00000475225.5_1_2:219251916-219252801:+|nuORF;ENST00000494322.5_1_2:219247091-219256951:+|nuORF;nc|ENSG00000018280|P49279-2|SLC11A1;ENSG00000018280|ENST00000233202|SLC11A1	ENST00000469449.1_1_2:219252516-219252801:+|nuORF	ENST00000469449.1_1_2:219252516-219252801:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.3114013671875	2	557.309895	1112.60524	1.2338	0.00068758	-0.7958	-0.00044351	0.43795	0.00024407	557.3092024048326	113.86	1.9693	112.41	112.1	114.07	-1.4461					97	38	4	0	0	0	0.13154	2	10564	10552;10564		88.643	12.764	1	517780			18480	1012	15067	15088	20503;20504	20504					0.053438505019585136
IIMPHNIYL	9	Oxidation (M)	_IIM(Oxidation (M))PHNIYL_		IIM(1)PHNIYL		IIM(120)PHNIYL	0	0	1		ENST00000469449.1_1_2:219252516-219252801:+|nuORF;ENST00000475225.5_1_2:219251916-219252801:+|nuORF;ENST00000494322.5_1_2:219247091-219256951:+|nuORF;nc|ENSG00000018280|P49279-2|SLC11A1;ENSG00000018280|ENST00000233202|SLC11A1	ENST00000469449.1_1_2:219252516-219252801:+|nuORF	ENST00000469449.1_1_2:219252516-219252801:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	565.3070678710938	2	565.307352	1128.60015	0.20207	0.00011423	0.57359	0.00032426	0.77567	0.00043849	565.3076159501649	96.83	2.3607	95.871	95.481	97.841	-0.95857					161	47	5	0	0	0	0.043206	5	8794	8794;8805;8811;8845;8851		123.99	13.869	1	3204400			18481	1012	15067	15089	20505;20506;20507;20508;20509	20505		33			0.04099546639326945
IIMPHNIYL	9	Oxidation (M)	_IIM(Oxidation (M))PHNIYL_		IIM(1)PHNIYL		IIM(120)PHNIYL	0	0	1		ENST00000469449.1_1_2:219252516-219252801:+|nuORF;ENST00000475225.5_1_2:219251916-219252801:+|nuORF;ENST00000494322.5_1_2:219247091-219256951:+|nuORF;nc|ENSG00000018280|P49279-2|SLC11A1;ENSG00000018280|ENST00000233202|SLC11A1	ENST00000469449.1_1_2:219252516-219252801:+|nuORF	ENST00000469449.1_1_2:219252516-219252801:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	565.3090209960938	2	565.307352	1128.60015	-0.66072	-0.00037351	1.487	0.00084064	0.82632	0.00046713	565.3081769044711	97.601	2.4979	95.841	95.465	97.963	-1.7595					157	48	5	0	0	0	0.043206	2	6582	6556;6582		123.99	22.777	1	5088000			18482	1012	15067	15089	20510;20511	20511		33			0.04099546639326945
IIMPHNIYL	9	Oxidation (M)	_IIM(Oxidation (M))PHNIYL_		IIM(1)PHNIYL		IIM(120)PHNIYL	0	0	1		ENST00000469449.1_1_2:219252516-219252801:+|nuORF;ENST00000475225.5_1_2:219251916-219252801:+|nuORF;ENST00000494322.5_1_2:219247091-219256951:+|nuORF;nc|ENSG00000018280|P49279-2|SLC11A1;ENSG00000018280|ENST00000233202|SLC11A1	ENST00000469449.1_1_2:219252516-219252801:+|nuORF	ENST00000469449.1_1_2:219252516-219252801:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.3089599609375	2	565.307352	1128.60015	1.1361	0.00064226	-0.16734	-9.4597E-05	0.96879	0.00054766	565.3072068648027	98.126	2.7067	95.747	95.368	98.074	-2.3786					164	52	5	0	0	0	0.043206	3	8780	8780;8792;8832		123.99	20.155	1	4552600			18483	1012	15067	15089	20512;20513;20514	20512		33			0.04099546639326945
IIMREIALN	9	Oxidation (M)	_IIM(Oxidation (M))REIALN_		IIM(1)REIALN		IIM(85)REIALN	0	0	1			REV__ENSG00000058335|ENST00000558480|RASGRF1	REV__ENSG00000058335|ENST00000558480|RASGRF1	MULTI-MSMS	OvCa99_classI_Rep5	1	544.8115844726562	2	544.810259	1087.60597	2.0627	0.0011238	0.097908	5.3342E-05	2.1606	0.0011771	544.8101418155541	137.04	0.91412	137.04	136.68	137.59	0					43	18	3	0	0	0	0.14998	1	15975	15975		84.916	16.431	1	336910	+		18484	16727	15068	15090	20515	20515		396			0.06566645150996919
IINDLIEKESL	11	Unmodified	_IINDLIEKESL_					0	0	0		tr|A0A7D6ZZU8|A0A7D6ZZU8_9CLOTPINdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07580PE=4SV=1	tr|A0A7D6ZZU8|A0A7D6ZZU8_9CLOTPINdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07580PE=4SV=1	tr|A0A7D6ZZU8|A0A7D6ZZU8_9CLOTPINdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07580PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	429.7635803222656	3	429.578254	1285.71293	-1.5413	-0.00066211	2.5089	0.0010778	0.96762	0.00041567	429.5794587478994	101.39	0.44501	100.63	100.42	100.86	-0.76401					12	8	2	0	0	0	0.025722	1	9319	9319		34.087	6.005	1	13478			18485	35973	15069	15091	20516	20516					0.08150473846421846
IINDTEDEP	9	Unmodified	_IINDTEDEP_					0	0	0		nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-MSMS	OvCa99_classI_Rep5	1	523.2381591796875	2	523.237844	1044.46113	0.21798	0.00011406	2.329	0.0012186	2.547	0.0013327	523.2389741235717	160.17	0.49847	160.17	159.91	160.4	0					16	9	3	0	0	0	0.49652	1	18771	18771		42.864	0.46813	1	47385			18486	4723	15070	15092	20517	20517					-0.0593174451514642
IINENTGDIQ	10	Unmodified	_IINENTGDIQ_					0	0	0		ENSG00000113361|ENST00000265071|CDH6;nc|ENSG00000113361|P55285-2|CDH6	ENSG00000113361|ENST00000265071|CDH6	ENSG00000113361|ENST00000265071|CDH6	MULTI-MSMS	OvCa99_classI_Rep5	1	558.7848510742188	2	558.78021	1115.54587	0.4999	0.00027934	3.8118	0.0021299	4.3117	0.0024093	558.7822500752283	65.022	0.47478	65.022	64.834	65.309	0					30	11	3	0	0	0	0.44722	1	5954	5954		61.691	3.445	1	1542800			18487	2968	15071	15093	20518	20518					-0.007283739785179932
IINFKIKVI	9	Unmodified	_IINFKIKVI_					0	0	0			REV__nc|ENSG00000184110|Q99613-2|EIF3C	REV__nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2567749023438	2	544.365527	1086.7165	0.90753	0.00049403	1.2065	0.00065676	2.114	0.0011508	544.3660509951367	90.899	0.5566	90.899	90.698	91.255	0					27	13	3	0	0	0	0.027462	1	9776	9776		50.025	20.875	1	1085200	+		18488	22404	15072	15094	20519	20519					0.1766123320155657
IINFSLLLV	9	Unmodified	_IINFSLLLV_					0	0	0		ENSG00000181939|ENST00000642128|OR4C15	ENSG00000181939|ENST00000642128|OR4C15	ENSG00000181939|ENST00000642128|OR4C15	MULTI-MSMS	OvCa9_classI_Rep3	3	516.3269653320312	2	516.328611	1030.64267	1.8915	0.00097663	-2.3464	-0.0012115	-0.4549	-0.00023488	516.3273063704338	111.37	1.3837	110.26	109.9	111.29	-1.1038					71	27	4	0	0	0	0.31747	1	8084	8084		60.972	0.67798	1	205270			18489	7962	15073	15095	20520	20520					0.1285726503922433
IINIWRKI	8	Unmodified	_IINIWRKI_					0	0	0		tr|A0A7D6VR24|A0A7D6VR24_9CLOTDUF4173domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00800PE=4SV=1	tr|A0A7D6VR24|A0A7D6VR24_9CLOTDUF4173domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00800PE=4SV=1	tr|A0A7D6VR24|A0A7D6VR24_9CLOTDUF4173domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00800PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.8142700195312	2	528.339844	1054.66514	1.5862	0.00083805	2.1328	0.0011269	3.719	0.0019649	528.8416358156621	127.79	0.41449	127.79	127.58	128	0					11	8	2	0	0	0	0.028476	1	14812	14812		31.955	0	1	47286			18490	34887	15074	15096	20521	20521					0.13998909227507284
IINKHTDES	9	Unmodified	_IINKHTDES_					0	0	0		nc|ENSG00000165819|Q86U44-2|METTL3;ENST00000537163.5_1_14:21967572-21971372:-|nuORF;ENSG00000165819|ENST00000298717|METTL3	nc|ENSG00000165819|Q86U44-2|METTL3	nc|ENSG00000165819|Q86U44-2|METTL3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.3102416992188	2	528.769645	1055.52474	-1.9275	-0.0010192	2.0823	0.001101	0.15474	8.1823E-05	528.7706285402259	100.35	1.4185	98.053	97.344	98.763	-2.296					50	25	4	0	0	0	0.027462	1	9046	9046		29.15	6.1071	1	161940			18491	6603	15075	15097	20522	20522					-0.0008033928741042473
IINKHTDES	9	Unmodified	_IINKHTDES_					0	0	0		nc|ENSG00000165819|Q86U44-2|METTL3;ENST00000537163.5_1_14:21967572-21971372:-|nuORF;ENSG00000165819|ENST00000298717|METTL3	nc|ENSG00000165819|Q86U44-2|METTL3	nc|ENSG00000165819|Q86U44-2|METTL3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	528.769645	1055.52474	-0.648	-0.00034264	0.81323	0.00043001	0.16523	8.737E-05	528.769695994908	99.716	0.96691	98.03	97.423	98.39	-1.685	0.086064	-0.00076029	NaN	37.159	38	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125690			18492	6603	15075	15097							-0.0008033928741042473
IINKILPR	8	Unmodified	_IINKILPR_					0	0	0		tr|A0A7D6W0D5|A0A7D6W0D5_9CLOTSmallribosomalsubunitbiogenesisGTPaseRsgAOS=ClostridiumintestinaleOX=36845GN=rsgAPE=3SV=1	tr|A0A7D6W0D5|A0A7D6W0D5_9CLOTSmallribosomalsubunitbiogenesisGTPaseRsgAOS=ClostridiumintestinaleOX=36845GN=rsgAPE=3SV=1	tr|A0A7D6W0D5|A0A7D6W0D5_9CLOTSmallribosomalsubunitbiogenesisGTPaseRsgAOS=ClostridiumintestinaleOX=36845GN=rsgAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	483.826416015625	2	483.826569	965.638586	-1.0787	-0.00052189	0.69458	0.00033606	-0.3841	-0.00018584	483.826819441973	77.321	1.8681	74.969	74.681	76.549	-2.3527					107	36	4	0	0	0	0.64377	1	4039	4039		54.765	0	1	951630			18493	35376	15076	15098	20523	20523					0.1543922033617946
IINLFFLSI	9	Unmodified	_IINLFFLSI_					0	0	0			REV__ENST00000284000.8_1_19:33873367-33873568:+|nuORF	REV__ENST00000284000.8_1_19:33873367-33873568:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.331298828125	2	540.328611	1078.64267	0.34656	0.00018726	2.5593	0.0013829	2.9059	0.0015701	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.67509	1	13535	13535		23.042	1.0826	1	342200	+		18494	24125	15077	15099	20524	20524					0.1064926503922834
IINLSAFKI	9	Unmodified	_IINLSAFKI_					0	0	0			REV__tr|A0A7D6ZUG7|A0A7D6ZUG7_9CLOTDNAreplicationandrepairproteinRecFOS=ClostridiumintestinaleOX=36845GN=recFPE=3SV=1	REV__tr|A0A7D6ZUG7|A0A7D6ZUG7_9CLOTDNAreplicationandrepairproteinRecFOS=ClostridiumintestinaleOX=36845GN=recFPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8208923339844	2	509.81841	1017.62227	-0.38757	-0.00019759	-0.15651	-7.979E-05	-0.54408	-0.00027738	509.8183131283342	122.45	1.333	122.23	121.92	123.25	-0.21803					51	26	3	0	0	0	0.18193	1	11848	11848		79.451	5.4763	1	92943	+		18495	32219	15078	15100	20525	20525					0.11416094379421793
IINMLFLSF	9	Oxidation (M)	_IINM(Oxidation (M))LFLSF_		IINM(1)LFLSF		IINM(63)LFLSF	0	0	1			REV__ENST00000560292.2_1_15:102277413-102284889:-|nuORF	REV__ENST00000560292.2_1_15:102277413-102284889:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	557.3048706054688	2	557.304278	1112.594	0.76161	0.00042445	2.2529	0.0012555	3.0145	0.00168	557.305338519675	79.155	2.3119	77.415	76.512	78.824	-1.7398					80	45	2	0	0	0	0.29717	1	6641	6641		63.306	7.8021	1	417440	+		18496	27614	15079	15101	20526	20526		613			0.04221028407800986
IINRLEEVL	9	Unmodified	_IINRLEEVL_					0	0	0		tr|A0A553SH01|A0A553SH01_NIACICoproporphyrinogenIIIoxidaseOS=NialliacirculansOX=1397GN=CEQ21_11915PE=3SV=1	tr|A0A553SH01|A0A553SH01_NIACICoproporphyrinogenIIIoxidaseOS=NialliacirculansOX=1397GN=CEQ21_11915PE=3SV=1	tr|A0A553SH01|A0A553SH01_NIACICoproporphyrinogenIIIoxidaseOS=NialliacirculansOX=1397GN=CEQ21_11915PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.7680053710938	2	549.829506	1097.64446	1.9273	0.0010597	-0.56533	-0.00031084	1.362	0.00074886	549.8291337354951	107.35	0.41646	107.35	107.19	107.6	0					15	9	2	0	0	0	0.027462	1	12124	12124		26.693	1.1189	1	334200			18497	33215	15080	15102	20527	20527					0.0995427405719056
IINSSITTK	9	Unmodified	_IINSSITTK_					0	0	0		ENSG00000163468|ENST00000295688|CCT3;nc|ENSG00000163468|P49368-2|CCT3;chr1:156333622-156338154|425|19.52|0.7|4.8|-|ENST00000533194|CCT3,CCT3	ENSG00000163468|ENST00000295688|CCT3	ENSG00000163468|ENST00000295688|CCT3	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.7885437011719	2	488.787307	975.560061	-0.69474	-0.00033958	0.066557	3.2532E-05	-0.62819	-0.00030705	488.78725344764604	55.484	1.0648	52.189	51.906	52.97	-3.2944					66	20	4	0	0	0	0.10421	3	3496	3496;3509;3520		96.034	16.583	1	747740			18498	6311	15081	15103	20528;20529;20530	20528					0.07130323240414782
IINSSITTK	9	Unmodified	_IINSSITTK_					0	0	0		ENSG00000163468|ENST00000295688|CCT3;nc|ENSG00000163468|P49368-2|CCT3;chr1:156333622-156338154|425|19.52|0.7|4.8|-|ENST00000533194|CCT3,CCT3	ENSG00000163468|ENST00000295688|CCT3	ENSG00000163468|ENST00000295688|CCT3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	488.787307	975.560061	-0.67459	-0.00032973	0.59055	0.00028865	-0.084037	-4.1076E-05	488.7875455314522	55.261	0.7964	52.447	52.122	52.918	-2.8139	0.12887	0.00042564	NaN	96.034	38	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139590			18499	6311	15081	15103							0.07130323240414782
IINTEPQQ	8	Unmodified	_IINTEPQQ_					0	0	0		ENST00000515608.5_1_8:6476566-6478541:-|nuORF	ENST00000515608.5_1_8:6476566-6478541:-|nuORF	ENST00000515608.5_1_8:6476566-6478541:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	471.748046875	2	471.748182	941.481811	-0.24714	-0.00011659	-0.23144	-0.00010918	-0.47857	-0.00022577	471.7479787376128	116.81	1.2877	115.76	115.49	116.78	-1.0414					55	25	3	0	0	0	0.74971	1	8736	8736		26.796	1.222	1	307460			18500	13052	15082	15104	20531	20531					0.008728906551937143
IINTHTLLL	9	Unmodified	_IINTHTLLL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.D1311G|1|0.23|ENSG00000140575|chr15:90486040-90486040|A/G|missense_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	OvCa9_classI_Rep2	2	519.3206176757812	2	519.321317	1036.62808	-0.025857	-1.3428E-05	-0.77822	-0.00040415	-0.80408	-0.00041757	519.3208981722679	105.56	3.4593	105.12	104.75	108.21	-0.43642					137	69	2	0	0	0	0.0094524	5	9796	9790;9796;9801;9807;9819		171.38	32.559	1	2268600			18501	4862	15083	15105	20532;20533;20534;20535;20536	20533					0.11123192891091094
IINTHTLLL	9	Unmodified	_IINTHTLLL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.D1311G|1|0.23|ENSG00000140575|chr15:90486040-90486040|A/G|missense_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	OvCa9_classI_Rep3	3	519.3223876953125	2	519.321317	1036.62808	0.74235	0.00038552	-0.95726	-0.00049712	-0.2149	-0.0001116	519.3207852987323	106.49	1.9818	105.22	104.8	106.78	-1.267					76	38	2	0	0	0	0.0094524	6	7529	7498;7504;7510;7517;7523;7529		171.38	32.559	1	2413900			18502	4862	15083	15105	20537;20538;20539;20540;20541;20542	20542					0.11123192891091094
IINTHTLLL	9	Unmodified	_IINTHTLLL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;IQGAP1|p.D1311G|1|0.23|ENSG00000140575|chr15:90486040-90486040|A/G|missense_variant	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.3211059570312	2	519.321317	1036.62808	-1.8278	-0.00094922	1.2458	0.00064697	-0.582	-0.00030225	519.321960155653	107.08	2.0153	105.2	104.75	106.76	-1.8785					100	39	5	0	0	0	0.0094524	3	9770	9758;9770;9782		171.38	45.571	1	2715900			18503	4862	15083	15105	20543;20544;20545	20544					0.11123192891091094
IINWTDRKKRR	11	Unmodified	_IINWTDRKKRR_					0	0	0		tr|A0A7D6VRB1|A0A7D6VRB1_9CLOTMechanosensitiveionchannelfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00835PE=3SV=1	tr|A0A7D6VRB1|A0A7D6VRB1_9CLOTMechanosensitiveionchannelfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00835PE=3SV=1	tr|A0A7D6VRB1|A0A7D6VRB1_9CLOTMechanosensitiveionchannelfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00835PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.9589538574219	3	495.963548	1484.86881	-6.4872	-0.0032174	-2.1345	-0.0010586	-8.6217	-0.0042761	495.9624827052588	164.14	0.3204	162.51	162.28	162.61	-1.6336					19	7	3	0	0	0	0.72573	1	16202	16202		6.001	0	1	128470			18504	34909	15084	15106	20546	20546					0.14577401931001077
IINYDLSVE	9	Unmodified	_IINYDLSVE_					0	0	0			REV__ZDBF2|p.G2318Rfs*12|1|0.09|ENSG00000204186|chr2:206311479-206311480|-/AGAGCTGTGGATATAAT|frameshift_variant	REV__ZDBF2|p.G2318Rfs*12|1|0.09|ENSG00000204186|chr2:206311479-206311480|-/AGAGCTGTGGATATAAT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.7550659179688	2	533.276772	1064.53899	1.5894	0.00084762	-1.5831	-0.0008442	0.0063974	3.4116E-06	533.7784423800562	148.5	0.49243	148.5	148.08	148.57	0					12	9	2	0	0	0	0.027462	1	17370	17370		35.618	15.136	1	25619	+		18505	23131	15085	15107	20547	20547					0.009303131409069465
IIPASNNP	8	Unmodified	_IIPASNNP_					0	0	0		nc|ENSG00000092200|Q96KN7-3|RPGRIP1;nc|ENSG00000092200|Q96KN7-2|RPGRIP1;nc|ENSG00000092200|Q96KN7-5|RPGRIP1;ENSG00000092200|ENST00000400017|RPGRIP1;nc|ENSG00000092200|Q96KN7-6|RPGRIP1;RPGRIP1|p.K914Ifs*16|1|0.14|ENSG00000092200|chr14:21327651-21327661|GAAACCCAACG/-|frameshift_variant	nc|ENSG00000092200|Q96KN7-3|RPGRIP1	nc|ENSG00000092200|Q96KN7-3|RPGRIP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	413.22747802734375	2	413.226885	824.439217	0.75589	0.00031235	-0.75883	-0.00031357	-0.0029375	-1.2138E-06	413.22646768223535	59.958	1.6843	56.528	56.259	57.944	-3.43					70	33	3	0	0	0	0.61758	1	4042	4042		60.294	0	1	777910			18506	1890	15086	15108	20548	20548					0.019975403176090367
IIPDPHSPKM	10	Unmodified	_IIPDPHSPKM_					0	0	0			REV__nc|ENSG00000174611|Q8NBH2-3|KY	REV__nc|ENSG00000174611|Q8NBH2-3|KY	MULTI-SECPEP	OvCa9_classI_Rep4_	4	566.8157958984375	2	567.802434	1133.59032	1.4394	0.00081728	-4.426	-0.0025131	-2.9866	-0.0016958	567.8001415648437	110.01	0.4209	108.41	108.28	108.7	-1.6011					9	7	2	0	0	0	0.026849	1	10116	10116		40.778	10.937	1	9153.2	+		18507	21843	15087	15109	20549	20549					0.02886358633963937
IIPEYRGLD	9	Unmodified	_IIPEYRGLD_					0	0	0			REV__tr|A0A553SGB6|A0A553SGB6_NIACIRadicalSAM/CxCxxxxCmotifproteinYfkABOS=NialliacirculansOX=1397GN=yfkABPE=4SV=1	REV__tr|A0A553SGB6|A0A553SGB6_NIACIRadicalSAM/CxCxxxxCmotifproteinYfkABOS=NialliacirculansOX=1397GN=yfkABPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.8626098632812	2	538.292756	1074.57096	0.76502	0.00041181	0.31717	0.00017073	1.0822	0.00058253	538.7942081382309	132.72	0.69205	131.6	131.24	131.93	-1.1249					28	13	3	0	0	0	0.027462	1	10664	10664		51.335	8.861	1	17676	+		18508	29683	15088	15110	20550	20550					0.036657256147236694
IIPFLRVF	8	Unmodified	_IIPFLRVF_					0	0	0		nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6;nc|ENSG00000124067|Q9UP95-4|SLC12A4;nc|ENSG00000124067|Q9UP95-3|SLC12A4;nc|ENSG00000124067|Q9UP95-5|SLC12A4;SLC12A4|p.N1042Gfs*16|1|0.7|ENSG00000124067|chr16:67945111-67945129|TGGGTGGGCCAGGCATGTT/-|frameshift_variant;nc|ENSG00000124067|Q9UP95-2|SLC12A4;nc|ENSG00000124067|Q9UP95-6|SLC12A4;ENSG00000124067|ENST00000316341|SLC12A4;nc|ENSG00000124067|Q9UP95-7|SLC12A4	nc|ENSG00000140199|Q9UHW9-6|SLC12A6	nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-MSMS	OvCa9_classI_Rep2	2	502.8138122558594	2	502.818213	1003.62187	-4.451	-0.0022381	-3.773	-0.0018971	-8.224	-0.0041352	502.8162192928447	153.83	1.4178	153.6	153.28	154.7	-0.22696					88	30	4	0	0	0	0.74013	2	15675	15627;15675		31.579	2.677	1	684970			18509	4827	15089	15111	20551;20552	20552					0.12020719450219985
IIPIKNVW	8	Unmodified	_IIPIKNVW_					0	0	0			REV__tr|A0A7D6VQ28|A0A7D6VQ28_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13885PE=4SV=1	REV__tr|A0A7D6VQ28|A0A7D6VQ28_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13885PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.25469970703125	2	491.807845	981.601138	-0.48529	-0.00023867	-4.03	-0.001982	-4.5153	-0.0022207	491.8055720385107	81.131	0.63828	78.42	78.15	78.788	-2.7106					16	12	2	0	0	0	0.028476	1	6658	6658		28.254	0	1	27498	+		18510	31294	15090	15112	20553	20553					0.10960129070554103
IIPIVMNKL	9	Unmodified	_IIPIVMNKL_					0	0	0		tr|A0A553SPV0|A0A553SPV0_NIACIMagnesiumtransporterMgtEOS=NialliacirculansOX=1397GN=mgtEPE=3SV=1	tr|A0A553SPV0|A0A553SPV0_NIACIMagnesiumtransporterMgtEOS=NialliacirculansOX=1397GN=mgtEPE=3SV=1	tr|A0A553SPV0|A0A553SPV0_NIACIMagnesiumtransporterMgtEOS=NialliacirculansOX=1397GN=mgtEPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.3004150390625	2	520.830463	1039.64637	0.69229	0.00036057	4.2011	0.002188	4.8933	0.0025486	520.8325824619986	81.35	0.50891	79.701	79.514	80.023	-1.6485					15	9	2	0	0	0	0.027449	1	6931	6931		40.573	0	1	24877			18511	34090	15091	15113	20554	20554					0.12813611541423597
IIPLAQFAF	9	Unmodified	_IIPLAQFAF_					0	0	0			REV__ENSG00000137860|ENST00000347644|SLC28A2	REV__ENSG00000137860|ENST00000347644|SLC28A2	MULTI-SECPEP	OvCa9_classI_Rep3	3	510.8434753417969	2	510.299853	1018.58515	1.4183	0.00072377	-1.4	-0.00071444	0.018289	9.3329E-06	510.29903922110594	125.27	0.52348	124.22	123.9	124.42	-1.0519					17	9	3	0	0	0	0.027462	1	9702	9702		25.45	0	1	18086	+		18512	19491	15092	15114	20555	20555					0.07660422833657776
IIPLPFFIV	9	Unmodified	_IIPLPFFIV_					0	0	0			REV__tr|A0A553STQ3|A0A553STQ3_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05435PE=3SV=1	REV__tr|A0A553STQ3|A0A553STQ3_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05435PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8248901367188	2	529.836071	1057.65759	1.0573	0.00056021	1.1635	0.00061647	2.2208	0.0011767	529.8369940308886	150.47	0.24861	150.47	150.34	150.59	0					7	4	2	0	0	0	0.027462	1	17623	17623		49.211	0	1	14457	+		18513	30996	15093	15115	20556	20556					0.13106756907222916
IIPLQIDLR	9	Unmodified	_IIPLQIDLR_					0	0	0			REV__nc|ENSG00000177238|Q6ZMU5-2|TRIM72	REV__nc|ENSG00000177238|Q6ZMU5-2|TRIM72	MULTI-MSMS	OvCa9_classI_Rep2	2	540.8408813476562	2	540.842416	1079.67028	-0.50813	-0.00027482	-2.1391	-0.0011569	-2.6473	-0.0014318	540.8411675935439	31.395	0.98717	28.685	28.494	29.481	-2.7097					43	19	3	0	0	0	0.61208	1	945	945		30.504	1.3541	1	162100	+		18514	21992	15094	15116	20557	20557					0.133631682994519
IIPMNKKTL	9	Unmodified	_IIPMNKKTL_					0	0	0		tr|A0A7D6ZXY9|A0A7D6ZXY9_9CLOTGlycosidehydrolasefamily13proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01115PE=3SV=1	tr|A0A7D6ZXY9|A0A7D6ZXY9_9CLOTGlycosidehydrolasefamily13proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01115PE=3SV=1	tr|A0A7D6ZXY9|A0A7D6ZXY9_9CLOTGlycosidehydrolasefamily13proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01115PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	529.3237915039062	2	529.325545	1056.63654	-1.1676	-0.00061804	-2.3999	-0.0012703	-3.5675	-0.0018884	529.3242535974534	136.04	1.0338	134.93	134.65	135.69	-1.1076					52	20	3	0	0	0	0.51865	1	11051	11051		40.778	10.937	1	71825			18515	35899	15095	15117	20558	20558					0.11048423536067276
IIPPIGMIDI	10	Unmodified	_IIPPIGMIDI_					0	0	0		tr|A0A553SP74|A0A553SP74_NIACIYggTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25890PE=3SV=1	tr|A0A553SP74|A0A553SP74_NIACIYggTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25890PE=3SV=1	tr|A0A553SP74|A0A553SP74_NIACIYggTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25890PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.765380859375	2	541.319928	1080.6253	0.78449	0.00042466	2.6203	0.0014184	3.4048	0.0018431	541.3209782978597	79.579	0.30817	77.239	77.103	77.412	-2.3399					6	5	2	0	0	0	0.026582	1	4299	4299		42.396	25.923	1	7316.9			18516	34011	15096	15118	20559	20559					0.08821601441923121
IIPSLFPTFV	10	Unmodified	_IIPSLFPTFV_					0	0	0			REV__ENSG00000171936|ENST00000641646|OR10H3	REV__ENSG00000171936|ENST00000641646|OR10H3	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3295288085938	2	567.333893	1132.65323	-3.474	-0.0019709	-3.7638	-0.0021353	-7.2378	-0.0041062	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.64063	1	12216	12216		37.159	5.2042	1	458690	+		18517	21659	15097	15119	20560	20560					0.09221247693653822
IIPTIEKF	8	Unmodified	_IIPTIEKF_					0	0	0			REV__tr|A0A7D6VNX6|A0A7D6VNX6_9CLOTRibosomalRNAsmallsubunitmethyltransferaseEOS=ClostridiumintestinaleOX=36845GN=HZF06_16470PE=3SV=1	REV__tr|A0A7D6VNX6|A0A7D6VNX6_9CLOTRibosomalRNAsmallsubunitmethyltransferaseEOS=ClostridiumintestinaleOX=36845GN=HZF06_16470PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.77044677734375	2	480.791861	959.569169	-0.56004	-0.00026926	-3.7437	-0.0017999	-4.3037	-0.0020692	480.7899530913278	40.243	0.82602	37.289	36.963	37.789	-2.9541					22	15	2	0	0	0	0.028476	1	1697	1697		45.952	5.3793	1	93076	+		18518	31211	15098	15120	20561	20561					0.08776716596753431
IIPTIEKF	8	Unmodified	_IIPTIEKF_					0	0	0			REV__tr|A0A7D6VNX6|A0A7D6VNX6_9CLOTRibosomalRNAsmallsubunitmethyltransferaseEOS=ClostridiumintestinaleOX=36845GN=HZF06_16470PE=3SV=1	REV__tr|A0A7D6VNX6|A0A7D6VNX6_9CLOTRibosomalRNAsmallsubunitmethyltransferaseEOS=ClostridiumintestinaleOX=36845GN=HZF06_16470PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	480.791861	959.569169	-0.52463	-0.00025224	-3.6746	-0.0017667	-4.1993	-0.002019	480.7899663061034	40.037	0.49903	37.327	37.102	37.601	-2.7097	0.019119	4.7746E-05	NaN	55.504	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27439	+		18519	31211	15098	15120							0.08776716596753431
IIPTPLRPV	9	Unmodified	_IIPTPLRPV_					0	0	0		ENST00000371975.8_1_1:46713425-46713950:+|nuORF	ENST00000371975.8_1_1:46713425-46713950:+|nuORF	ENST00000371975.8_1_1:46713425-46713950:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	503.3255920410156	2	503.326402	1004.63825	0.14036	7.0648E-05	-0.73987	-0.0003724	-0.59951	-0.00030175	503.32594865659956	112.82	1.9244	112.7	112.28	114.2	-0.12174					111	38	5	0	0	0	0.29717	2	10677	10677;10713		63.306	2.3343	1	946430			18520	10971	15099	15121	20562;20563	20562					0.13611800616320124
IIPTSLSLLL	10	Unmodified	_IIPTSLSLLL_					0	0	0		ENST00000294161.10_1_11:62496007-62496118:+|nuORF	ENST00000294161.10_1_11:62496007-62496118:+|nuORF	ENST00000294161.10_1_11:62496007-62496118:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.7763671875	2	535.347	1068.67945	-1.4855	-0.00079525	2.284	0.0012227	0.79848	0.00042746	535.8508137067914	75.885	0.26395	74.031	73.938	74.202	-1.854					6	4	2	0	0	0	0.026871	1	6279	6279		29.15	0	1	9025.1			18521	10112	15100	15122	20564	20564					0.1478551686514038
IIPVLLMLV	9	Unmodified	_IIPVLLMLV_					0	0	0		nc|ENSG00000028116|Q86Y07-4|VRK2;nc|ENSG00000028116|Q86Y07-3|VRK2;ENSG00000028116|ENST00000340157|VRK2	nc|ENSG00000028116|Q86Y07-4|VRK2	nc|ENSG00000028116|Q86Y07-4|VRK2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.30072021484375	2	505.837757	1009.66096	-1.2827	-0.00064886	4.1854	0.0021171	2.9027	0.0014683	505.83986575876656	41.768	0.67591	38.787	38.388	39.064	-2.9804					17	12	2	0	0	0	0.027462	1	1859	1859		21.702	7.0382	1	10727			18522	1057	15101	15123	20565	20565					0.15651683689577567
IIQAPLQTTE	10	Unmodified	_IIQAPLQTTE_					0	0	0		ENST00000585457.5_1_17:42253853-42254417:-|nuORF	ENST00000585457.5_1_17:42253853-42254417:-|nuORF	ENST00000585457.5_1_17:42253853-42254417:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	557.3104858398438	2	557.311146	1112.60774	1.2004	0.00066899	-3.3297	-0.0018557	-2.1293	-0.0011867	557.3090127399616	112.67	2.0232	112.55	112.18	114.2	-0.12174					94	40	4	0	0	0	0.35465	1	10657	10657		74.255	0.28031	1	394630			18523	14033	15102	15124	20566	20566					0.05593977440616982
IIQFAAVVI	9	Unmodified	_IIQFAAVVI_					0	0	0		tr|A0A553SL90|A0A553SL90_NIACI3'-5'exonucleaseDinGOS=NialliacirculansOX=1397GN=dinGPE=3SV=1	tr|A0A553SL90|A0A553SL90_NIACI3'-5'exonucleaseDinGOS=NialliacirculansOX=1397GN=dinGPE=3SV=1	tr|A0A553SL90|A0A553SL90_NIACI3'-5'exonucleaseDinGOS=NialliacirculansOX=1397GN=dinGPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.3104248046875	2	487.307678	972.600803	-0.26351	-0.00012841	2.2318	0.0010876	1.9683	0.00095917	487.30905598189844	105.88	1.5134	103.86	103.15	104.66	-2.0161					60	29	3	0	0	0	0.42057	1	9641	9641		50.025	2.1089	1	351030			18524	33696	15103	15125	20567	20567					0.11340709350690759
IIQPRSWEN	9	Unmodified	_IIQPRSWEN_					0	0	0		ERC1-CACNA1C|23|fusion;ERC1-CACNA1C|37|fusion;ERC1-CACNA1C|9|fusion;ERC1-CACNA1C|18|fusion;ERC1-CACNA1C|11|fusion;ERC1-CACNA1C|17|fusion;ERC1-CACNA1C|14|fusion;ERC1-CACNA1C|35|fusion;ERC1-CACNA1C|33|fusion;ERC1-CACNA1C|39|fusion;ERC1-CACNA1C|25|fusion;ERC1-CACNA1C|5|fusion;ERC1-CACNA1C|43|fusion;ERC1-CACNA1C|38|fusion;ERC1-CACNA1C|44|fusion;ERC1-CACNA1C|45|fusion;ERC1-CACNA1C|31|fusion;ERC1-CACNA1C|32|fusion;ERC1-CACNA1C|40|fusion;ERC1-CACNA1C|30|fusion;ERC1-CACNA1C|34|fusion;ERC1-CACNA1C|36|fusion;ERC1-CACNA1C|41|fusion;ERC1-CACNA1C|8|fusion;ERC1-CACNA1C|22|fusion;ERC1-CACNA1C|19|fusion;ERC1-CACNA1C|46|fusion;ERC1-CACNA1C|6|fusion;ERC1-CACNA1C|3|fusion;ERC1-CACNA1C|1|fusion;ERC1-CACNA1C|4|fusion;ERC1-CACNA1C|42|fusion;ERC1-CACNA1C|13|fusion;ERC1-CACNA1C|29|fusion;ERC1-CACNA1C|12|fusion;ERC1-CACNA1C|2|fusion;ERC1-CACNA1C|10|fusion;ERC1-CACNA1C|16|fusion;ERC1-CACNA1C|20|fusion;ERC1-CACNA1C|26|fusion;ERC1-CACNA1C|21|fusion;ERC1-CACNA1C|15|fusion;ERC1-CACNA1C|24|fusion;ERC1-CACNA1C|27|fusion;ERC1-CACNA1C|7|fusion;ERC1-CACNA1C|28|fusion;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;CACNA1C|p.V1586Wfs*9|1|0.1|ENSG00000151067|chr12:2666770-2666770|C/-|frameshift_variant;CACNA1C|p.S1498Afs*17|1|0.18|ENSG00000151067|chr12:2664940-2664940|A/-|frameshift_variant;CACNA1C|p.I1373Sfs*65|1|0.06|ENSG00000151067|chr12:2651667-2651668|-/G|frameshift_variant;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C	ERC1-CACNA1C|23|fusion;nc|ENSG00000151067|Q13936-26|CACNA1C	ERC1-CACNA1C|23|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	570.8216552734375	2	571.80128	1141.58801	-1.2347	-0.00070602	1.4721	0.00084177	0.23741	0.00013575	571.8021982385953	83.669	0.49098	82.071	81.731	82.222	-1.5988					19	9	4	0	0	0	0.027453	1	7183	7183		37.812	0	1	21928			18525	14314;15092	15104	15126	20568	20568					0.022876462205204007
IIQSDKIQEP	10	Unmodified	_IIQSDKIQEP_					0	0	0			REV__tr|A0A553SIE7|A0A553SIE7_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_14715PE=4SV=1	REV__tr|A0A553SIE7|A0A553SIE7_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_14715PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.4006958007812	2	585.821878	1169.6292	1.9124	0.0011203	-2.5259	-0.0014797	-0.61344	-0.00035937	586.3201233274718	118.05	0.36602	118.05	117.88	118.25	0					10	7	2	0	0	0	0.026602	1	13536	13536		65.465	16.024	1	27625	+		18526	29885	15105	15127	20569	20569					0.05117362469331965
IIQYDTNLNI	10	Unmodified	_IIQYDTNLNI_					0	0	0			REV__tr|A0A7D6ZVH4|A0A7D6ZVH4_9CLOTCof-typeHAD-IIBfamilyhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04280PE=4SV=1	REV__tr|A0A7D6ZVH4|A0A7D6ZVH4_9CLOTCof-typeHAD-IIBfamilyhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04280PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	402.918701171875	3	402.883677	1205.6292	1.5202	0.00061245	-0.06631	-2.6715E-05	1.4539	0.00058573	403.2190304589152	78.55	0.14326	76.811	76.712	76.855	-1.7398					4	2	2	0	0	0	0.027187	1	6570	6570		25.126	0	1	3328.6	+		18527	32252	15106	15128	20570	20570					0.03461362469329288
IIRAINYIS	9	Unmodified	_IIRAINYIS_					0	0	0			REV__tr|A0A553SQZ9|A0A553SQZ9_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00055PE=4SV=1	REV__tr|A0A553SQZ9|A0A553SQZ9_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00055PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8174438476562	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.61208	1	11655	11655		30.504	1.3541	1	178650	+		18528	30675	15107	15129	20571	20571					0.09498308748334239
IIRAPLLSL	9	Unmodified	_IIRAPLLSL_					0	0	0			REV__nc|ENSG00000155158|Q5VTQ0-5|TTC39B	REV__nc|ENSG00000155158|Q5VTQ0-5|TTC39B	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3339538574219	2	498.334227	994.653902	-0.6989	-0.00034829	0.47295	0.00023569	-0.22596	-0.0001126	498.33435878229506	133.81	2.0717	132.69	132.27	134.34	-1.1226					102	41	4	0	0	0	0.18193	2	10755	10755;10761		79.451	13.022	1	981140	+		18529	20416	15108	15130	20572;20573	20572					0.15636087133384535
IIRAPLLSL	9	Unmodified	_IIRAPLLSL_					0	0	0			REV__nc|ENSG00000155158|Q5VTQ0-5|TTC39B	REV__nc|ENSG00000155158|Q5VTQ0-5|TTC39B	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.33349609375	2	498.334227	994.653902	3.0095	0.0014997	-3.4235	-0.001706	-0.41398	-0.0002063	498.33243610568087	134.14	2.7147	132.61	132.05	134.76	-1.5257					123	54	4	0	0	0	0.31747	1	12978	12978		60.972	4.2509	1	1105000	+		18530	20416	15108	15130	20574	20574					0.15636087133384535
IIRFTMGYI	9	Unmodified	_IIRFTMGYI_					0	0	0		tr|A0A7D6VRU9|A0A7D6VRU9_9CLOTECFtransporterScomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_02365PE=4SV=1	tr|A0A7D6VRU9|A0A7D6VRU9_9CLOTECFtransporterScomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_02365PE=4SV=1	tr|A0A7D6VRU9|A0A7D6VRU9_9CLOTECFtransporterScomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_02365PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	557.3096313476562	2	557.309895	1112.60524	0.29489	0.00016435	-0.26706	-0.00014884	0.027831	1.551E-05	557.3095133240754	113.55	1.9738	112.48	112.15	114.12	-1.0753					96	38	4	0	0	0	0.18193	1	8372	8372		79.451	0	1	433950			18531	34957	15109	15131	20575	20575					0.053438505019585136
IIRGDVIVF	9	Unmodified	_IIRGDVIVF_					0	0	0			REV__tr|A0A7D6ZQI4|A0A7D6ZQI4_9CLOTCobW/HypB/UreGnucleotide-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00450PE=4SV=1	REV__tr|A0A7D6ZQI4|A0A7D6ZQI4_9CLOTCobW/HypB/UreGnucleotide-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00450PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	516.3128662109375	2	516.316035	1030.61752	-4.2539	-0.0021964	0.14413	7.4418E-05	-4.1098	-0.002122	516.3160035152533	156.4	1.1562	156.18	155.89	157.05	-0.22696					77	28	5	0	0	0	0.64339	1	15899	15899		26.796	6.3143	1	397210	+		18532	32148	15110	15132	20576	20576					0.10343210236646883
IIRHGAKL	8	Unmodified	_IIRHGAKL_					0	0	0		ENST00000473073.1_1_3:136045962-136048865:+|nuORF;ENSG00000114054|ENST00000251654|PCCB;nc|ENSG00000114054|P05166-2|PCCB	ENST00000473073.1_1_3:136045962-136048865:+|nuORF	ENST00000473073.1_1_3:136045962-136048865:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	454.2657165527344	2	454.295436	906.57632	0.24508	0.00011134	0.40698	0.00018489	0.65206	0.00029623	454.2950703796412	103.42	1.9327	101.99	101.66	103.59	-1.4347					65	36	2	0	0	0	0.028476	1	7211	7211		60.294	17.819	1	33737			18533	3009	15111	15133	20577	20577					0.11929493987850037
IIRIFYRK	8	Unmodified	_IIRIFYRK_					0	0	0		tr|A0A7D7AHG5|A0A7D7AHG5_9CLOTStageVsporulationproteinSpoVMOS=ClostridiumintestinaleOX=36845GN=spoVMPE=4SV=1	tr|A0A7D7AHG5|A0A7D7AHG5_9CLOTStageVsporulationproteinSpoVMOS=ClostridiumintestinaleOX=36845GN=spoVMPE=4SV=1	tr|A0A7D7AHG5|A0A7D7AHG5_9CLOTStageVsporulationproteinSpoVMOS=ClostridiumintestinaleOX=36845GN=spoVMPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.8572998046875	2	554.853119	1107.69168	3.8134	0.0021159	4.2686	0.0023684	8.082	0.0044843	554.8552903131986	133.45	1.5244	131.92	131.56	133.08	-1.5257					46	28	3	0	0	0	0.74679	1	12878	12878		28.254	2.8041	1	57978			18534	36272	15112	15134	20578	20578					0.14214598118837785
IIRIFYRK	8	Unmodified	_IIRIFYRK_					0	0	0		tr|A0A7D7AHG5|A0A7D7AHG5_9CLOTStageVsporulationproteinSpoVMOS=ClostridiumintestinaleOX=36845GN=spoVMPE=4SV=1	tr|A0A7D7AHG5|A0A7D7AHG5_9CLOTStageVsporulationproteinSpoVMOS=ClostridiumintestinaleOX=36845GN=spoVMPE=4SV=1	tr|A0A7D7AHG5|A0A7D7AHG5_9CLOTStageVsporulationproteinSpoVMOS=ClostridiumintestinaleOX=36845GN=spoVMPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	554.853119	1107.69168	1.1844	0.00065718	6.884	0.0038196	8.0684	0.0044768	554.8568061168382	132.11	0.97743	131.89	131.4	132.38	-0.22696	-0.017754	0.001366	NaN	28.254	35	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74441			18535	36272	15112	15134							0.14214598118837785
IIRLFYGEL	9	Unmodified	_IIRLFYGEL_					0	0	0			REV__tr|A0A7D7A179|A0A7D7A179_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02835PE=4SV=1	REV__tr|A0A7D7A179|A0A7D7A179_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02835PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	562.3333129882812	2	562.329142	1122.64373	2.2569	0.0012691	-0.35387	-0.00019899	1.9031	0.0010702	562.8299987242693	138.03	0.67809	138.03	137.82	138.5	0					28	14	3	0	0	0	0.079296	1	16096	16096		102.77	28.799	1	224480	+		18536	32476	15113	15135	20579	20579					0.08731479408129417
IIRLLPAEVD	10	Unmodified	_IIRLLPAEVD_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;nc|ENSG00000074755|O43149-2|ZZEF1;ENST00000572426.5_1_17:3937307-3974023:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	OvCa9_classI_Rep3	3	569.845703125	2	569.845156	1137.67576	0.70877	0.00040389	0.37786	0.00021532	1.0866	0.00061921	569.8452383624614	66.591	2.2644	63.645	63.265	65.53	-2.9459					89	44	4	0	0	0	0.78463	1	2760	2760		20.947	0.95016	1	226750			18537	1517	15114	15136	20580	20580					0.11242847091284602
IIRLTQLTSKL	11	Unmodified	_IIRLTQLTSKL_					0	0	0			REV__MER57A-int_dup1703|chr19:23112751-23113886:+|1.0685339057591443|0.266030358890427|2.01|427.0|41|3|sense	REV__MER57A-int_dup1703|chr19:23112751-23113886:+|1.0685339057591443|0.266030358890427|2.01|427.0|41|3|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	643.40673828125	2	643.413737	1284.81292	-5.8857	-0.003787	-2.272	-0.0014618	-8.1578	-0.0052488	643.4123840837739	162.79	0.23622	162.57	162.4	162.64	-0.22696					12	4	4	0	0	0	0.68021	1	16592	16592		36.447	11.928	1	972740	+		18538	28657	15115	15137	20581	20581					0.18190755970817918
IIRMNNPATV	10	Unmodified	_IIRMNNPATV_					0	0	0		NCOA6|p.A1848Wfs*4|1|0.09|ENSG00000198646|chr20:34740711-34740715|CTGCA/-|frameshift_variant;ENSG00000198646|ENST00000359003|NCOA6	NCOA6|p.A1848Wfs*4|1|0.09|ENSG00000198646|chr20:34740711-34740715|CTGCA/-|frameshift_variant	NCOA6|p.A1848Wfs*4|1|0.09|ENSG00000198646|chr20:34740711-34740715|CTGCA/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.2982177734375	2	564.813333	1127.61211	-0.28043	-0.00015839	3.8545	0.0021771	3.5741	0.0020187	564.815760435335	61.546	0.87572	61.546	61.289	62.165	0					36	20	3	0	0	0	0.026688	1	5414	5414		32.812	0	1	1148200			18539	8841	15116	15138	20582	20582					0.053411633825362514
IIRNIAYLY	9	Unmodified	_IIRNIAYLY_					0	0	0			REV__tr|A0A7D6ZXJ3|A0A7D6ZXJ3_9CLOTFUSCfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22125PE=4SV=1	REV__tr|A0A7D6ZXJ3|A0A7D6ZXJ3_9CLOTFUSCfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22125PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	569.8367309570312	2	569.834591	1137.65463	-0.6563	-0.00037398	-0.12934	-7.3703E-05	-0.78564	-0.00044768	569.8345222869018	99.284	4.3485	97.599	97.322	101.67	-1.685					272	84	6	0	0	0	0.27464	1	6796	6796		65.897	0.094285	1	12084000	+		18540	32334	15117	15139	20583	20583					0.09130881782425604
IIRPTAVIL	9	Unmodified	_IIRPTAVIL_					0	0	0		ENSG00000069943|ENST00000164305|PIGB	ENSG00000069943|ENST00000164305|PIGB	ENSG00000069943|ENST00000164305|PIGB	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3354187011719	2	498.334227	994.653902	1.2058	0.00060088	-1.8531	-0.00092347	-0.64734	-0.00032259	498.3333151769235	123.76	0.97957	122.73	122.31	123.29	-1.0377					75	18	5	0	0	0	0.29717	1	9586	9586		63.306	2.3343	1	3991100			18541	1410	15118	15140	20584	20584					0.15636087133384535
IIRPTAVIL	9	Unmodified	_IIRPTAVIL_					0	0	0		ENSG00000069943|ENST00000164305|PIGB	ENSG00000069943|ENST00000164305|PIGB	ENSG00000069943|ENST00000164305|PIGB	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3348693847656	2	498.334227	994.653902	-1.8174	-0.00090567	1.0953	0.00054583	-0.72208	-0.00035984	498.334772441205	125.12	4.2738	123.72	123.39	127.66	-1.3908					210	84	5	0	0	0	0.28934	1	11847	11847		64.207	5.4253	1	4129000			18542	1410	15118	15140	20585	20585					0.15636087133384535
IIRQKRLSH	9	Unmodified	_IIRQKRLSH_					0	0	0		ENSG00000104835|ENST00000221431|SARS2;nc|ENSG00000104835|Q9NP81-2|SARS2	ENSG00000104835|ENST00000221431|SARS2	ENSG00000104835|ENST00000221431|SARS2	MULTI-SECPEP	OvCa9_classI_Rep2	2	576.7876586914062	2	575.862006	1149.70946	-1.7716	-0.0010202	2.8585	0.0016461	1.0868	0.00062587	575.8637574399606	102.36	0.64166	101.68	101.49	102.13	-0.68459					14	12	2	0	0	0	0.027462	1	9468	9468		40.573	8.9383	1	6690.6			18543	2397	15119	15141	20586	20586					0.1405931337369566
IIRQVILQWN	10	Unmodified	_IIRQVILQWN_					0	0	0		nc|ENSG00000105855|P26012-2|ITGB8;ENSG00000105855|ENST00000222573|ITGB8	nc|ENSG00000105855|P26012-2|ITGB8	nc|ENSG00000105855|P26012-2|ITGB8	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8822631835938	2	641.885147	1281.75574	-4.6434	-0.0029805	0.6524	0.00041876	-3.991	-0.0025618	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.7759	1	15468	15468		21.96	1.013	1	543390			18544	2508	15120	15142	20587	20587					0.12613333485137446
IIRTFISLP	9	Unmodified	_IIRTFISLP_					0	0	0		tr|A0A7D6VYZ9|A0A7D6VYZ9_9CLOTDedAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18280PE=3SV=1	tr|A0A7D6VYZ9|A0A7D6VYZ9_9CLOTDedAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18280PE=3SV=1	tr|A0A7D6VYZ9|A0A7D6VYZ9_9CLOTDedAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18280PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.8087158203125	2	530.331685	1058.64882	-0.37767	-0.00020029	-1.339	-0.0007101	-1.7166	-0.00091039	530.3306510681703	80.453	1.0483	78.758	78.419	79.468	-1.6951					41	20	3	0	0	0	0.027447	1	6796	6796		56.721	10.769	1	67113			18545	35345	15121	15143	20588	20588					0.12183783270756976
IIRTKANGGL	10	Unmodified	_IIRTKANGGL_					0	0	0			REV__nc|ENSG00000138778|Q02224-3|CENPE	REV__nc|ENSG00000138778|Q02224-3|CENPE	MULTI-MSMS	OvCa99_classI_Rep5	1	521.8255004882812	2	521.822015	1041.62948	1.9341	0.0010092	4.3612	0.0022757	6.2952	0.003285	521.8241413508126	121.68	0.698	121.68	121.38	122.08	0					42	14	4	0	0	0	0.55359	1	14011	14011		47.657	1.7054	1	1386900	+		18546	19572	15122	15144	20589	20589					0.11032826979840138
IIRTLVANPL	10	Unmodified	_IIRTLVANPL_					0	0	0			REV__POLE3|p.I15L|1|0.1|ENSG00000148229|chr9:113410251-113410251|T/G|missense_variant	REV__POLE3|p.I15L|1|0.1|ENSG00000148229|chr9:113410251-113410251|T/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	555.3535766601562	2	555.355691	1108.69683	-7.0233	-0.0039004	3.381	0.0018777	-3.6422	-0.0020227	555.3574443782504	158.85	1.8694	157.58	157.26	159.13	-1.267					85	36	5	0	0	0	0.71192	1	13739	13739		29.15	0	1	417810	+		18547	29308	15123	15145	20590	20590					0.14682857190791765
IIRTPVIYL	9	Unmodified	_IIRTPVIYL_					0	0	0		ENST00000474060.1_1_5:139908868-139908910:+|nuORF	ENST00000474060.1_1_5:139908868-139908910:+|nuORF	ENST00000474060.1_1_5:139908868-139908910:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	544.3472290039062	2	544.347335	1086.68012	0.74405	0.00040502	-0.74307	-0.00040449	0.00098399	5.3563E-07	544.346788814307	129.27	1.1853	129.05	128.77	129.96	-0.22696					60	23	4	0	0	0	0.63422	1	12700	12700		27.882	0	1	195480			18548	12424	15124	15146	20591	20591					0.14024356304844332
IIRYEVIRRCF	11	Unmodified	_IIRYEVIRRCF_					0	0	0		USH2A|p.Y4273Cfs*19|1|0.36|ENSG00000042781|chr1:215675092-215675093|AT/-|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A	USH2A|p.Y4273Cfs*19|1|0.36|ENSG00000042781|chr1:215675092-215675093|AT/-|frameshift_variant	USH2A|p.Y4273Cfs*19|1|0.36|ENSG00000042781|chr1:215675092-215675093|AT/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.7672119140625	3	489.946618	1466.81802	-0.44204	-0.00021658	2.4941	0.001222	2.0521	0.0010054	489.94780273091504	29.854	0.59977	29.854	29.586	30.186	0					25	11	3	0	0	0	0.026113	1	1070	1070		24.232	4.2013	1	57225			18549	1126	15125	15147	20592	20592					0.1032873656179163
IISAFFLF	8	Unmodified	_IISAFFLF_					0	0	0			REV__ENSG00000133116|ENST00000380099|KL	REV__ENSG00000133116|ENST00000380099|KL	MSMS	OvCa99_classI_Rep5	1	479.27813720703125	2	479.275847	956.537141	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.633	1	38.633	38.133	39.133	0								0	0	0	0.30129	1	2210	2210		83.287	8.7706	1		+		18550	19131	15126	15148	20593	20593					0.05713348913604932
IISDNMKHF	9	Oxidation (M)	_IISDNM(Oxidation (M))KHF_		IISDNM(1)KHF		IISDNM(71)KHF	0	0	1			REV__tr|A0A553SLK3|A0A553SLK3_NIACIHDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20690PE=4SV=1	REV__tr|A0A553SLK3|A0A553SLK3_NIACIHDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20690PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	560.7833862304688	2	560.776416	1119.53828	1.9751	0.0011076	3.866	0.002168	5.8411	0.0032756	560.7779905862091	119.16	0.60426	119.16	118.86	119.47	0					29	12	3	0	0	0	0.22961	1	13652	13652		71.296	7.0884	1	265800	+		18551	30233	15127	15149	20594	20594		662			-0.01670804779791979
IISESQLSPP	10	Unmodified	_IISESQLSPP_					0	0	0		ENSG00000164185|ENST00000296600|ZNF474	ENSG00000164185|ENST00000296600|ZNF474	ENSG00000164185|ENST00000296600|ZNF474	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.8225708007812	2	535.790047	1069.56554	0.819	0.00043881	-0.63237	-0.00033882	0.18664	9.9998E-05	535.7900496134807	88.231	0.59133	86.863	86.543	87.135	-1.3676					13	11	2	0	0	0	0.026782	1	7747	7747		37.812	0	1	6985.3			18552	6429	15128	15150	20595	20595					0.033540020322334385
IISFPSNNIYS	11	Unmodified	_IISFPSNNIYS_					0	0	0		nc|ENSG00000186960|Q86U37|LINC01551;ENST00000399387.8_1_14:29242013-29261464:+|nuORF	nc|ENSG00000186960|Q86U37|LINC01551	nc|ENSG00000186960|Q86U37|LINC01551	MULTI-MSMS	OvCa99_classI_Rep5	1	627.8241577148438	2	627.821878	1253.6292	-0.34985	-0.00021964	2.4616	0.0015454	2.1118	0.0013258	627.8233525090543	55.038	1.1711	55.038	54.761	55.932	0					78	27	4	0	0	0	0.38584	1	4463	4463		61.691	0	1	4836300			18553	11387	15129	15151	20596	20596					0.012533624693332968
IISGTMVMFQ	10	Unmodified	_IISGTMVMFQ_					0	0	0		nc|ENSG00000162493|Q86YL7-2|PDPN	nc|ENSG00000162493|Q86YL7-2|PDPN	nc|ENSG00000162493|Q86YL7-2|PDPN	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.3611450195312	2	563.785395	1125.55624	1.5321	0.0008638	-0.69942	-0.00039432	0.83272	0.00046947	563.7852008241708	155.65	0.46225	155.65	155.43	155.89	0					15	8	3	0	0	0	0.026956	1	18236	18236		34.173	11.593	1	38152			18554	15131	15130	15152	20597	20597					-0.001518058493047647
IISHSIEKS	9	Unmodified	_IISHSIEKS_					0	0	0		tr|A0A553SPE5|A0A553SPE5_NIACIPeptidedeformylaseOS=NialliacirculansOX=1397GN=defPE=3SV=1	tr|A0A553SPE5|A0A553SPE5_NIACIPeptidedeformylaseOS=NialliacirculansOX=1397GN=defPE=3SV=1	tr|A0A553SPE5|A0A553SPE5_NIACIPeptidedeformylaseOS=NialliacirculansOX=1397GN=defPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.7616882324219	2	507.284931	1012.55531	0.43247	0.00021939	-1.3529	-0.00068632	-0.92045	-0.00046693	507.2840916939126	126.31	0.39229	126.07	125.8	126.19	-0.2359					12	7	2	0	0	0	0.027462	1	12340	12340		32.812	11.865	1	9422.3			18555	34035	15131	15153	20598	20598					0.04953439097675982
IISIIHLFL	9	Unmodified	_IISIIHLFL_					0	0	0		L1MC5_dup3481|chr4:19631159-19632103:+|1.0071503765471246|0.0011382453961836|9.79|425.0|64|2|anti-sense	L1MC5_dup3481|chr4:19631159-19632103:+|1.0071503765471246|0.0011382453961836|9.79|425.0|64|2|anti-sense	L1MC5_dup3481|chr4:19631159-19632103:+|1.0071503765471246|0.0011382453961836|9.79|425.0|64|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.2860107421875	2	534.844428	1067.6743	1.43	0.00076484	0.54275	0.00029029	1.9728	0.0010551	534.8445239835894	147.34	0.49104	147.34	147.06	147.55	0					22	9	3	0	0	0	0.027462	1	17232	17232		19.36	16.201	1	141560			18556	14607	15132	15154	20599	20599					0.14317257793163662
IISKARPDLL	10	Unmodified	_IISKARPDLL_					0	0	0		nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-3|RYR3	nc|ENSG00000198838|Q15413-2|RYR3	nc|ENSG00000198838|Q15413-2|RYR3	MULTI-MSMS	OvCa9_classI_Rep3	3	563.3521728515625	2	563.353148	1124.69174	-1.0854	-0.00061147	0.27756	0.00015637	-0.80785	-0.00045511	563.3535121729102	117.2	1.8826	116.17	115.84	117.73	-1.0324					63	37	2	0	0	0	0.45225	1	8818	8818		60.972	0.85368	1	2467900			18557	8886	15133	15155	20600	20600					0.13438553328182934
IISKTKQVI	9	Unmodified	_IISKTKQVI_					0	0	0		nc|ENSG00000126214|Q07866-8|KLC1;nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866-3|KLC1;nc|ENSG00000126214|Q07866|KLC1;nc|ENSG00000126214|Q07866-7|KLC1;nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-6|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1;KLC1|p.T215Efs*65|1|0.11|ENSG00000126214|chr14:103662772-103662773|-/GAGACCCTGTCTCAGAAAAACAAGCAAT|frameshift_variant;KLC1|p.A37Dfs*5|1|0.06|ENSG00000126214|chr14:103654673-103654674|-/A|frameshift_variant;KLC1|p.L38Tfs*8|1|0.06|ENSG00000126214|chr14:103654674-103654675|-/AACAGCACAAATGATGCTGT|frameshift_variant	nc|ENSG00000126214|Q07866-8|KLC1	nc|ENSG00000126214|Q07866-8|KLC1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.3360595703125	2	515.336967	1028.65938	0.31457	0.00016211	-1.2307	-0.0006342	-0.91608	-0.00047209	515.3362971482879	45.601	2.0474	45.601	45.332	47.379	0					135	46	6	0	0	0	0.0094273	2	3161	3161;3190		171.53	18.496	1	20415000			18558	3768	15134	15156	20601;20602	20601					0.14619765925203865
IISLHKIH	8	Unmodified	_IISLHKIH_					0	0	0		tr|A0A553SFK3|A0A553SFK3_NIACICompetenceproteinCoiAOS=NialliacirculansOX=1397GN=CEQ21_09025PE=4SV=1	tr|A0A553SFK3|A0A553SFK3_NIACICompetenceproteinCoiAOS=NialliacirculansOX=1397GN=CEQ21_09025PE=4SV=1	tr|A0A553SFK3|A0A553SFK3_NIACICompetenceproteinCoiAOS=NialliacirculansOX=1397GN=CEQ21_09025PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	480.8008117675781	2	480.803094	959.591636	-3.5276	-0.0016961	-0.80978	-0.00038934	-4.3374	-0.0020854	480.80256125573777	150.83	1.6209	150.61	150.17	151.79	-0.22696					93	32	4	0	0	0	0.74679	1	15285	15285		28.254	0	1	676150			18559	33044	15135	15157	20603	20603					0.1102236078503438
IISLKALGR	9	Unmodified	_IISLKALGR_					0	0	0			REV__tr|A0A7D7ADP1|A0A7D7ADP1_9CLOTOFAfamilyMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23610PE=4SV=1	REV__tr|A0A7D7ADP1|A0A7D7ADP1_9CLOTOFAfamilyMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23610PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.29302978515625	2	485.824027	969.633501	-1.45	-0.00070445	0.98297	0.00047755	-0.46704	-0.0002269	485.8243404917066	82.702	1.3046	80.406	80.138	81.443	-2.2963					53	26	3	0	0	0	0.027462	1	4659	4659		16.473	0	1	63033	+		18560	32697	15136	15158	20604	20604					0.14746916473552574
IISLLFGIIYL	11	Unmodified	_IISLLFGIIYL_					0	0	0		tr|A0A7D6ZH49|A0A7D6ZH49_9CLOTDHA2familyeffluxMFStransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_01470PE=3SV=1	tr|A0A7D6ZH49|A0A7D6ZH49_9CLOTDHA2familyeffluxMFStransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_01470PE=3SV=1	tr|A0A7D6ZH49|A0A7D6ZH49_9CLOTDHA2familyeffluxMFStransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_01470PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	422.2221984863281	3	422.268692	1263.78425	-0.6013	-0.00025391	-1.4797	-0.00062485	-2.081	-0.00087876	422.26796382806685	60.25	1.371	57.479	57.133	58.504	-2.7702					65	25	5	0	0	0	0.025516	1	4500	4500		43.651	30.143	1	132670			18561	35565	15137	15159	20605	20605					0.1629063834172939
IISLLFGIIYL	11	Unmodified	_IISLLFGIIYL_					0	0	0		tr|A0A7D6ZH49|A0A7D6ZH49_9CLOTDHA2familyeffluxMFStransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_01470PE=3SV=1	tr|A0A7D6ZH49|A0A7D6ZH49_9CLOTDHA2familyeffluxMFStransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_01470PE=3SV=1	tr|A0A7D6ZH49|A0A7D6ZH49_9CLOTDHA2familyeffluxMFStransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_01470PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	422.22393798828125	3	422.268692	1263.78425	-0.20522	-8.6658E-05	-2.3573	-0.0009954	-2.5625	-0.0010821	422.26763250959135	61.823	1.1501	58.365	58.01	59.16	-3.4577					55	23	3	0	0	0	0.025853	1	4263	4263		37.508	23.422	1	101490			18562	35565	15137	15159	20606	20606					0.1629063834172939
IISLSGGLIL	10	Unmodified	_IISLSGGLIL_					0	0	0			REV__tr|A0A7D6ZJJ7|A0A7D6ZJJ7_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11300PE=3SV=1	REV__tr|A0A7D6ZJJ7|A0A7D6ZJJ7_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11300PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	493.3188781738281	2	493.318243	984.621933	1.2328	0.00060816	-1.4512	-0.00071588	-0.21836	-0.00010772	493.3174202897749	124.35	2.0803	123.31	122.97	125.05	-1.0377					98	39	4	0	0	0	0.43592	1	9619	9619		63.306	2.3343	1	770890	+		18563	32086	15138	15160	20607	20607					0.12900674659567812
IISNFRSY	8	Unmodified	_IISNFRSY_					0	0	0		tr|A0A7D6ZI38|A0A7D6ZI38_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05590PE=4SV=1	tr|A0A7D6ZI38|A0A7D6ZI38_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05590PE=4SV=1	tr|A0A7D6ZI38|A0A7D6ZI38_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05590PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.8338623046875	2	500.266542	998.51853	0.13527	6.7672E-05	-0.93761	-0.00046905	-0.80234	-0.00040138	500.26592595499955	57.743	0.58893	57.743	57.438	58.027	0					19	13	2	0	0	0	0.028476	1	4874	4874		63.306	17.354	1	211140			18564	35603	15139	15161	20608	20608					0.01921187271761937
IISPFNVDL	9	Unmodified	_IISPFNVDL_					0	0	0			REV__tr|A0A7D6ZV68|A0A7D6ZV68_9CLOTBglGfamilytranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02720PE=4SV=1	REV__tr|A0A7D6ZV68|A0A7D6ZV68_9CLOTBglGfamilytranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02720PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.7656555175781	2	509.2844	1016.55425	0.12518	6.375E-05	-4.3148	-0.0021975	-4.1896	-0.0021337	509.28215980350546	65.003	0.89227	65.003	64.417	65.309	0					36	21	3	0	0	0	0.027462	1	5894	5894		30.504	20.238	1	1612100	+		18565	32239	15140	15162	20609	20609					0.04663224728756177
IISPNYPPS	9	Unmodified	_IISPNYPPS_					0	0	0			REV__HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|6|1|sense	REV__HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|6|1|sense	MSMS	OvCa9_classI_Rep4_	4	494.259521484375	2	494.260925	986.507297	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.318	1	68.904	68.404	69.404	-3.4137								0	0	0	0.16648	1	5554	5554		60.972	7.6205	1		+		18566	28253	15141	15163	20610	20610					0.01350365177609092
IISQVDAKV	9	Unmodified	_IISQVDAKV_					0	0	0		ARHGEF18|p.C504Wfs*18|1|0.1|ENSG00000104880|chr19:7453686-7453687|-/GCATGAGCCACCATGCCACGCCCAGC|frameshift_variant;ARHGEF18|p.E529Kfs*25|1|0.05|ENSG00000104880|chr19:7456369-7456369|A/-|frameshift_variant;ARHGEF18|p.E555Dfs*22|1|0.14|ENSG00000104880|chr19:7458559-7458560|AG/-|frameshift_variant;ARHGEF18|p.C504Lfs*75|1|0.12|ENSG00000104880|chr19:7453685-7453686|-/TACA|frameshift_variant;nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;ENSG00000104880|ENST00000668164|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-1|ARHGEF18	ARHGEF18|p.C504Wfs*18|1|0.1|ENSG00000104880|chr19:7453686-7453687|-/GCATGAGCCACCATGCCACGCCCAGC|frameshift_variant	ARHGEF18|p.C504Wfs*18|1|0.1|ENSG00000104880|chr19:7453686-7453687|-/GCATGAGCCACCATGCCACGCCCAGC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	486.7913513183594	2	486.78985	971.565146	-0.65823	-0.00032042	0.30925	0.00015054	-0.34898	-0.00016988	486.78988476827834	67.975	1.1694	67.975	67.604	68.774	0					63	28	4	0	0	0	0.056671	2	6379	6379;6409		114.89	29.734	1	4964700			18567	111	15142	15164	20611;20612	20611					0.07822627103041668
IISSDYSSR	9	Unmodified	_IISSDYSSR_					0	0	0		ENST00000304385.7_1_4:153549084-153549300:-|nuORF	ENST00000304385.7_1_4:153549084-153549300:-|nuORF	ENST00000304385.7_1_4:153549084-153549300:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.8043212890625	2	514.256371	1026.49819	1.916	0.0009853	-1.6261	-0.00083621	0.28992	0.00014909	514.2555980674418	92.882	0.62816	92.882	92.635	93.263	0					18	14	2	0	0	0	0.027426	1	10109	10109		63.306	29.134	1	244010			18568	10224	15143	15165	20613	20613					-0.014000281787048152
IISSDYSSR	9	Unmodified	_IISSDYSSR_					0	0	0		ENST00000304385.7_1_4:153549084-153549300:-|nuORF	ENST00000304385.7_1_4:153549084-153549300:-|nuORF	ENST00000304385.7_1_4:153549084-153549300:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.256371	1026.49819	-0.10256	-5.2744E-05	2.4355	0.0012524	2.3329	0.0011997	514.257468012307	93.88	0.36641	92.781	92.539	92.906	-1.0995	-0.050547	0.0022978	NaN	63.306	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10289			18569	10224	15143	15165							-0.014000281787048152
IISSILNVIL	10	Unmodified	_IISSILNVIL_					0	0	0		tr|A0A7D6ZIL3|A0A7D6ZIL3_9CLOTMATEfamilyeffluxtransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_07515PE=4SV=1	tr|A0A7D6ZIL3|A0A7D6ZIL3_9CLOTMATEfamilyeffluxtransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_07515PE=4SV=1	tr|A0A7D6ZIL3|A0A7D6ZIL3_9CLOTMATEfamilyeffluxtransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_07515PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	542.8543701171875	2	542.85245	1083.69035	2.0009	0.0010862	0.63063	0.00034234	2.6315	0.0014285	542.8526687647666	136.75	0.62305	136.75	136.49	137.11	0					25	12	3	0	0	0	0.59317	1	15932	15932		42.864	0.46813	1	162920			18570	35619	15144	15166	20614	20614					0.15184919239436567
IISSKKSPRV	10	Unmodified	_IISSKKSPRV_					0	0	0		EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant;nc|ENSG00000110723|Q8NEV8-2|EXPH5;ENSG00000110723|ENST00000265843|EXPH5;EXPH5|p.R1200Kfs*45|1|0.04|ENSG00000110723|chr11:108511908-108511908|C/-|frameshift_variant	EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant	EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.8536987304688	2	557.850773	1113.68699	1.6689	0.00093098	3.8771	0.0021628	5.546	0.0030938	557.8527697517924	113.94	1.0395	113.94	113.66	114.7	0					51	22	5	0	0	0	0.026826	1	13078	13078		36.447	3.6343	1	3167200			18571	2792	15145	15167	20615	20615					0.13469669185428756
IISSNEMFR	9	Unmodified	_IISSNEMFR_					0	0	0			REV__nc|ENSG00000284762|O95263-2|PDE8B	REV__nc|ENSG00000284762|O95263-2|PDE8B	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.7968139648438	2	548.776416	1095.53828	1.9334	0.001061	0.51742	0.00028395	2.4508	0.0013449	549.2781664723468	85.092	0.57618	85.092	84.758	85.334	0					27	13	3	0	0	0	0.027462	1	8887	8887		38.806	8.3025	1	443280	+		18572	18141	15146	15168	20616	20616					-0.0056680477980535215
IISTIKKTF	9	Unmodified	_IISTIKKTF_					0	0	0		ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	MULTI-MSMS	OvCa99_classI_Rep5	1	525.8333740234375	2	525.831517	1049.64848	0.74458	0.00039152	0.99427	0.00052282	1.7388	0.00091434	525.83194601751	156.25	2.5735	156.25	155.89	158.46	0					107	51	3	0	0	0	0.27001	1	18395	18395		66.429	7.6473	1	333000			18573	1894	15147	15169	20617	20617					0.12564363550882263
IISTVLKI	8	Unmodified	_IISTVLKI_					0	0	0		nc|ENSG00000158731|Q8NGY7|OR10J6P	nc|ENSG00000158731|Q8NGY7|OR10J6P	nc|ENSG00000158731|Q8NGY7|OR10J6P	MULTI-MSMS	OvCa99_classI_Rep5	1	443.80322265625	2	443.802229	885.589904	2.6382	0.0011708	-0.84144	-0.00037343	1.7968	0.00079741	443.8017351433862	116.93	0.68323	116.93	116.68	117.37	0					26	14	2	0	0	0	0.56113	1	13382	13382		71.378	0	1	1325700			18574	15122	15148	15170	20618	20618					0.14253306976399926
IISTYCMPNK	10	Unmodified	_IISTYCMPNK_					0	0	0		tr|A0A7D6W3B5|A0A7D6W3B5_9CLOTMBOATfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09250PE=3SV=1	tr|A0A7D6W3B5|A0A7D6W3B5_9CLOTMBOATfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09250PE=3SV=1	tr|A0A7D6W3B5|A0A7D6W3B5_9CLOTMBOATfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09250PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.2162475585938	2	585.288302	1168.56205	-0.67305	-0.00039393	-3.6694	-0.0021477	-4.3424	-0.0025416	585.2863238577869	64.354	0.41869	64.354	64.253	64.672	0					12	9	2	0	0	0	0.026802	1	5880	5880		26.693	1.1189	1	125950			18575	35450	15149	15171	20619	20619					-0.015487073376334592
IISVVLTAH	9	Unmodified	_IISVVLTAH_					0	0	0		nc|ENSG00000066827|Q9P243-3|ZFAT;nc|ENSG00000066827|Q9P243-2|ZFAT;ENSG00000066827|ENST00000377838|ZFAT;ENST00000523040.1_1_8:135615174-135649821:-|nuORF;ZFAT|p.T252Hfs*7|1|0.16|ENSG00000066827|chr8:134608760-134608760|T/-|frameshift_variant	nc|ENSG00000066827|Q9P243-3|ZFAT	nc|ENSG00000066827|Q9P243-3|ZFAT	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.2210693359375	2	476.794935	951.575317	0.33804	0.00016117	-1.2022	-0.0005732	-0.86415	-0.00041202	476.79415615268033	116.34	1.3872	114.97	114.7	116.08	-1.3645					63	26	4	0	0	0	0.027462	1	10966	10966		47.916	1.9636	1	168030			18576	1360	15150	15172	20620	20620					0.09759234828277386
IITAFIRAL	9	Unmodified	_IITAFIRAL_					0	0	0		ENST00000414826.1_1_3:175177932-175205321:+|nuORF;ENST00000473253.5_1_3:174581768-175298945:+|nuORF;ENSG00000177694|ENST00000454872|NAALADL2	ENST00000414826.1_1_3:175177932-175205321:+|nuORF	ENST00000414826.1_1_3:175177932-175205321:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	509.32708740234375	2	509.326402	1016.63825	1.8391	0.00093671	-0.4333	-0.00022069	1.4058	0.00071602	509.32613202826394	129.35	0.47212	129.35	129.07	129.54	0					16	9	2	0	0	0	0.64427	1	14995	14995		26.693	0	1	157880			18577	7704	15151	15173	20621	20621					0.13059800616315442
IITAGMAYIF	10	Unmodified	_IITAGMAYIF_					0	0	0		ENSG00000184307|ENST00000638807|ZDHHC23;nc|ENSG00000184307|Q8IYP9|ZDHHC23;ENST00000488129.1_1_3:113676552-113677474:+|nuORF	ENSG00000184307|ENST00000638807|ZDHHC23	ENSG00000184307|ENST00000638807|ZDHHC23	MULTI-SECPEP	OvCa9_classI_Rep2	2	550.8294677734375	2	550.296453	1098.57835	-0.92696	-0.0005101	0.29436	0.00016198	-0.63261	-0.00034812	550.2962402691529	34.05	0.79082	31.341	31.168	31.959	-2.7097					19	15	2	0	0	0	0.026982	1	1307	1307		30.504	2.6214	1	25500			18578	8144	15152	15174	20622	20622					0.03300741890757308
IITGDEELLK	10	Unmodified	_IITGDEELLK_					0	0	0			REV__ENSG00000124171|ENST00000371610|PARD6B	REV__ENSG00000124171|ENST00000371610|PARD6B	MULTI-SECPEP	OvCa9_classI_Rep2	2	566.8159790039062	2	565.818804	1129.62306	0.11611	6.5699E-05	1.0534	0.00059602	1.1695	0.00066172	565.8193597262925	108.75	0.8405	108.53	108.27	109.11	-0.22498					30	16	2	0	0	0	0.026688	1	10209	10209		40.778	21.675	1	83635	+		18579	18669	15153	15175	20623	20623					0.0634284423781537
IITHVIANN	9	Unmodified	_IITHVIANN_					0	0	0			REV__tr|A0A553SIZ7|A0A553SIZ7_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15800PE=4SV=1	REV__tr|A0A553SIZ7|A0A553SIZ7_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15800PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.7878723144531	2	497.787641	993.56073	0.34776	0.00017311	-0.73931	-0.00036802	-0.39155	-0.00019491	497.787060805859	38.004	1.5381	35.112	34.891	36.429	-2.8925					70	30	4	0	0	0	0.42676	1	1444	1444		49.442	3.4693	1	293390	+		18580	29949	15154	15176	20624	20624					0.06369162680141471
IITILPKAIY	10	Unmodified	_IITILPKAIY_					0	0	0		L1PB1_dup5905|chr7:93807211-93809400:+|8.337698263303487|0.2056128638309657|5.34|416.0|33|2|sense	L1PB1_dup5905|chr7:93807211-93809400:+|8.337698263303487|0.2056128638309657|5.34|416.0|33|2|sense	L1PB1_dup5905|chr7:93807211-93809400:+|8.337698263303487|0.2056128638309657|5.34|416.0|33|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.8409423828125	2	572.870643	1143.72673	1.6679	0.0009555	-0.049206	-2.8189E-05	1.6187	0.00092731	573.3724724896961	126.3	0.23578	126.3	126.13	126.37	0					6	4	2	0	0	0	0.026802	1	14588	14588		51.335	13.524	1	28214			18581	14777	15155	15177	20625	20625					0.16061796136136763
IITIPTFSPGS	11	Unmodified	_IITIPTFSPGS_					0	0	0		tr|A0A7D6ZZ88|A0A7D6ZZ88_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05340PE=4SV=1	tr|A0A7D6ZZ88|A0A7D6ZZ88_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05340PE=4SV=1	tr|A0A7D6ZZ88|A0A7D6ZZ88_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05340PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	566.815185546875	2	566.816064	1131.61758	-0.24812	-0.00014064	-0.2703	-0.00015321	-0.51842	-0.00029385	566.8159504694337	109.72	2.4602	108.58	108.24	110.71	-1.1444					116	47	3	0	0	0	0.54764	1	7920	7920		49.442	1.7842	1	1478800			18582	35950	15156	15178	20626	20626					0.057031654459933634
IITIPTFSPGS	11	Unmodified	_IITIPTFSPGS_					0	0	0		tr|A0A7D6ZZ88|A0A7D6ZZ88_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05340PE=4SV=1	tr|A0A7D6ZZ88|A0A7D6ZZ88_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05340PE=4SV=1	tr|A0A7D6ZZ88|A0A7D6ZZ88_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05340PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.8154907226562	2	566.816064	1131.61758	1.6155	0.00091566	-2.2296	-0.0012638	-0.61416	-0.00034811	566.8149073889535	110.19	2.7767	108.59	108.28	111.06	-1.6011					118	52	4	0	0	0	0.56722	1	10182	10182		47.657	11.211	1	1542500			18583	35950	15156	15178	20627	20627					0.057031654459933634
IITIRALM	8	Unmodified	_IITIRALM_					0	0	0			REV__tr|A0A7D6VVI0|A0A7D6VVI0_9CLOTProtein-exportmembraneproteinSecGOS=ClostridiumintestinaleOX=36845GN=secGPE=3SV=1	REV__tr|A0A7D6VVI0|A0A7D6VVI0_9CLOTProtein-exportmembraneproteinSecGOS=ClostridiumintestinaleOX=36845GN=secGPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	465.793701171875	2	465.793881	929.573209	0.819	0.00038149	-1.6997	-0.0007917	-0.88068	-0.00041022	465.7928953168896	140.29	0.91	140.29	140.02	140.93	0					40	18	3	0	0	0	0.68714	1	16398	16398		45.952	1.4209	1	246990	+		18584	31719	15157	15179	20628	20628					0.10560482818823402
IITKDSHAL	9	Unmodified	_IITKDSHAL_					0	0	0		ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	OvCa9_classI_Rep3	3	500.29095458984375	2	499.287474	996.560395	0.0027377	1.3669E-06	-0.79579	-0.00039733	-0.79305	-0.00039596	499.28710705090845	79.766	2.0701	77.426	76.61	78.68	-2.3399					104	40	4	0	0	0	0.46356	1	4311	4311		45.972	0.020292	1	2058500			18585	8495	15158	15180	20629	20629					0.061977429602734446
IITLFRLQE	9	Unmodified	_IITLFRLQE_					0	0	0		tr|A0A553SN30|A0A553SN30_NIACIXanthinedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_23720PE=4SV=1	tr|A0A553SN30|A0A553SN30_NIACIXanthinedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_23720PE=4SV=1	tr|A0A553SN30|A0A553SN30_NIACIXanthinedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_23720PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	566.8153076171875	2	566.839874	1131.66519	-0.017187	-9.7424E-06	-1.6027	-0.00090848	-1.6199	-0.00091822	566.8387610891614	108.92	0.79114	108.69	108.47	109.26	-0.22498					27	15	2	0	0	0	0.027459	1	10233	10233		52.937	15.778	1	50071			18586	33902	15159	15181	20630	20630					0.10462864436863129
IITLKPFK	8	Unmodified	_IITLKPFK_					0	0	0			REV__ENST00000354807.7_1_1:220246285-220247378:-|nuORF	REV__ENST00000354807.7_1_1:220246285-220247378:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	480.31695556640625	2	480.318046	958.621539	0.60293	0.0002896	-0.4826	-0.0002318	0.12033	5.7799E-05	480.3176337071437	130.34	1.4398	130.11	129.86	131.3	-0.22697					62	28	4	0	0	0	0.7224	1	12840	12840		38.806	0	1	107540	+		18587	20781	15160	15182	20631	20631					0.14057299730370687
IITNRLLW	8	Unmodified	_IITNRLLW_					0	0	0		tr|A0A7D6VR74|A0A7D6VR74_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00375PE=4SV=1	tr|A0A7D6VR74|A0A7D6VR74_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00375PE=4SV=1	tr|A0A7D6VR74|A0A7D6VR74_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00375PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	514.8156127929688	2	514.816202	1027.61785	0.90183	0.00046428	-1.2813	-0.00065961	-0.37942	-0.00019533	514.8154267431231	126.5	1.3815	126.27	125.95	127.33	-0.2359					72	27	4	0	0	0	0.61436	1	12354	12354		60.972	11.53	1	385000			18588	34900	15161	15183	20632	20632					0.10514629956514909
IITPTLNSL	9	Unmodified	_IITPTLNSL_					0	0	0		OR2AE1|p.I288T|1|0.08|ENSG00000244623|chr7:99876171-99876171|A/G|missense_variant;ENSG00000244623|ENST00000316368|OR2AE1	OR2AE1|p.I288T|1|0.08|ENSG00000244623|chr7:99876171-99876171|A/G|missense_variant	OR2AE1|p.I288T|1|0.08|ENSG00000244623|chr7:99876171-99876171|A/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.2908630371094	2	486.292225	970.569897	3.3464	0.0016273	-3.7995	-0.0018477	-0.45304	-0.00022031	486.29031472683596	133.8	3.4888	132.27	131.95	135.44	-1.5257					167	70	3	0	0	0	0.35444	1	13076	13076		56.721	1.9447	1	1397500			18589	9400	15162	15184	20633	20633					0.08343511245811897
IITPWLSAI	9	Unmodified	_IITPWLSAI_					0	0	0			REV__tr|A0A7D6VYK4|A0A7D6VYK4_9CLOTQueTtransporterfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17105PE=4SV=1	REV__tr|A0A7D6VYK4|A0A7D6VYK4_9CLOTQueTtransporterfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17105PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.29229736328125	2	507.305136	1012.59572	-0.85712	-0.00043482	1.3847	0.00070247	0.52758	0.00026764	507.30581920441614	26.866	0.39949	26.866	26.593	26.992	0					11	7	2	0	0	0	0.027462	1	731	731		30.504	0	1	39387	+		18590	31820	15163	15185	20634	20634					0.08992405488072563
IITQEIDSHEG	11	Unmodified	_IITQEIDSHEG_					0	0	0		tr|A0A7D7A290|A0A7D7A290_9CLOTDiscoidindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07485PE=3SV=1	tr|A0A7D7A290|A0A7D7A290_9CLOTDiscoidindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07485PE=3SV=1	tr|A0A7D7A290|A0A7D7A290_9CLOTDiscoidindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07485PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	621.39208984375	2	621.304049	1240.59355	-1.1111	-0.0006903	-3.5874	-0.0022289	-4.6985	-0.0029192	621.3017398670049	106.63	1.1484	104.76	104.54	105.69	-1.8785					32	21	3	0	0	0	0.025958	1	9689	9689		28.081	9.8194	1	61656			18591	36067	15164	15186	20635	20635					-0.017127197783111114
IITQEIDSHEG	11	Unmodified	_IITQEIDSHEG_					0	0	0		tr|A0A7D7A290|A0A7D7A290_9CLOTDiscoidindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07485PE=3SV=1	tr|A0A7D7A290|A0A7D7A290_9CLOTDiscoidindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07485PE=3SV=1	tr|A0A7D7A290|A0A7D7A290_9CLOTDiscoidindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07485PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	621.304049	1240.59355	-1.0649	-0.0006616	-4.1155	-0.002557	-5.1804	-0.0032186	621.3013425034633	105.08	1.1902	104.64	104.31	105.5	-0.43642	-0.069685	0.00025411	NaN	28.081	35	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59762			18592	36067	15164	15186							-0.017127197783111114
IITQEIDSHEG	11	Unmodified	_IITQEIDSHEG_					0	0	0		tr|A0A7D7A290|A0A7D7A290_9CLOTDiscoidindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07485PE=3SV=1	tr|A0A7D7A290|A0A7D7A290_9CLOTDiscoidindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07485PE=3SV=1	tr|A0A7D7A290|A0A7D7A290_9CLOTDiscoidindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07485PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	621.304049	1240.59355	1.3722	0.00085254	-6.0884	-0.0037828	-4.7163	-0.0029302	621.3001975844697	106.09	0.8879	104.74	104.4	105.29	-1.3482	0.026113	-0.0021975	NaN	28.081	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60332			18593	36067	15164	15186							-0.017127197783111114
IITRLGLPSAI	11	Unmodified	_IITRLGLPSAI_					0	0	0			REV__ENSG00000117597|ENST00000491415|UTP25	REV__ENSG00000117597|ENST00000491415|UTP25	MULTI-MSMS	OvCa9_classI_Rep2	2	577.3681640625	2	577.368798	1152.72304	-0.0015386	-8.8833E-07	-0.31024	-0.00017912	-0.31177	-0.00018001	577.368591979319	125.62	1.9266	125.38	125.01	126.94	-0.2359					114	38	5	0	0	0	0.3578	1	12255	12255		64.207	11.271	1	983740	+		18594	18360	15165	15187	20636	20636					0.15279126362293027
IITRLGLPSAI	11	Unmodified	_IITRLGLPSAI_					0	0	0			REV__ENSG00000117597|ENST00000491415|UTP25	REV__ENSG00000117597|ENST00000491415|UTP25	MULTI-MSMS	OvCa9_classI_Rep4_	4	577.3680419921875	2	577.368798	1152.72304	-1.6942	-0.00097816	1.3228	0.00076377	-0.37133	-0.00021439	577.3694914290571	127.2	2.4686	125.77	125.44	127.91	-1.4357					130	48	5	0	0	0	0.48738	1	12130	12130		54.776	0.053964	1	1097800	+		18595	18360	15165	15187	20637	20637					0.15279126362293027
IITRYDLLN	9	Unmodified	_IITRYDLLN_					0	0	0			REV__ENSG00000147459|ENST00000276440|DOCK5	REV__ENSG00000147459|ENST00000276440|DOCK5	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.289306640625	2	560.821681	1119.62881	1.8088	0.0010144	-1.1183	-0.00062717	0.69052	0.00038726	560.8210060923979	83.182	0.68139	83.182	82.906	83.588	0					26	15	2	0	0	0	0.027455	1	8684	8684		26.693	13.239	1	1399100	+		18596	20067	15166	15188	20638	20638					0.07377987540144204
IITSHQILA	9	Unmodified	_IITSHQILA_					0	0	0			REV__ENSG00000056736|ENST00000288167|IL17RB;REV__nc|ENSG00000056736|Q9NRM6-2|IL17RB	REV__nc|ENSG00000056736|Q9NRM6-2|IL17RB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.2625732421875	2	498.297842	994.581131	-0.18415	-9.1763E-05	-0.33884	-0.00016884	-0.52299	-0.0002606	498.2976075756302	78.67	1.4152	75.919	75.571	76.986	-2.7514					59	29	3	0	0	0	0.027164	1	6375	6375		68.787	17.451	1	210210	+		18597	16718;26352	15167	15189	20639	20639					0.08362333339948691
IITSHQILA	9	Unmodified	_IITSHQILA_					0	0	0			REV__ENSG00000056736|ENST00000288167|IL17RB;REV__nc|ENSG00000056736|Q9NRM6-2|IL17RB	REV__nc|ENSG00000056736|Q9NRM6-2|IL17RB	MULTI-MATCH	OvCa9_classI_Rep2	2		2	498.297842	994.581131	-0.4042	-0.00020141	-0.295	-0.000147	-0.69919	-0.00034841	498.2975803467502	77.648	1.3821	75.858	75.519	76.901	-1.7894	0.00047718	-0.0001588	NaN	68.787	57	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144490	+		18598	16718;26352	15167	15189							0.08362333339948691
IITSHQILA	9	Unmodified	_IITSHQILA_					0	0	0			REV__ENSG00000056736|ENST00000288167|IL17RB;REV__nc|ENSG00000056736|Q9NRM6-2|IL17RB	REV__nc|ENSG00000056736|Q9NRM6-2|IL17RB	MULTI-MATCH	OvCa9_classI_Rep3	3		2	498.297842	994.581131	-0.67759	-0.00033764	0.15653	7.7997E-05	-0.52106	-0.00025965	498.2979290443306	78.148	1.2438	75.796	75.497	76.741	-2.3527	-0.061894	0.00029119	NaN	68.787	55	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186720	+		18599	16718;26352	15167	15189							0.08362333339948691
IITSSLIPDI	10	Unmodified	_IITSSLIPDI_					0	0	0		ENSG00000179630|ENST00000325686|LACC1	ENSG00000179630|ENST00000325686|LACC1	ENSG00000179630|ENST00000325686|LACC1	MULTI-SECPEP	OvCa9_classI_Rep2	2	535.7616577148438	2	536.31844	1070.62233	-0.7608	-0.00040803	4.3013	0.0023069	3.5405	0.0018988	536.8219766182291	78.658	1.2633	76.918	76.459	77.722	-1.7398					66	24	5	0	0	0	0.026697	1	6541	6541		45.952	0	1	143870			18600	7836	15168	15190	20640	20640					0.08984049588775633
IITSSLIPDI	10	Unmodified	_IITSSLIPDI_					0	0	0		ENSG00000179630|ENST00000325686|LACC1	ENSG00000179630|ENST00000325686|LACC1	ENSG00000179630|ENST00000325686|LACC1	MULTI-SECPEP	OvCa9_classI_Rep3	3	535.7631225585938	2	536.31844	1070.62233	1.2094	0.0006486	2.1113	0.0011323	3.3206	0.0017809	536.8207607007297	79.318	1.5468	76.978	76.466	78.013	-2.3399					81	30	4	0	0	0	0.026582	1	4214	4214		60.972	16.855	1	266030			18601	7836	15168	15190	20641	20641					0.08984049588775633
IITVVLLLK	9	Unmodified	_IITVVLLLK_					0	0	0		ENST00000401722.7_2_12:98995398-98995467:+|nuORF	ENST00000401722.7_2_12:98995398-98995467:+|nuORF	ENST00000401722.7_2_12:98995398-98995467:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.8094177246094	2	506.362453	1010.71035	-1.102	-0.000558	3.8805	0.001965	2.7786	0.001407	506.3644340910172	99.652	0.19879	98.822	98.666	98.865	-0.83051					5	3	2	0	0	0	0.027441	1	9081	9081		40.778	16.259	1	13720			18602	11421	15169	15191	20642	20642					0.20542714970042653
IITVVLLLK	9	Unmodified	_IITVVLLLK_					0	0	0		ENST00000401722.7_2_12:98995398-98995467:+|nuORF	ENST00000401722.7_2_12:98995398-98995467:+|nuORF	ENST00000401722.7_2_12:98995398-98995467:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	506.362453	1010.71035	2.8987	0.0014678	5.7681	0.0029208	8.6668	0.0043886	506.3647476126006	99.056	0.31931	99.056	98.916	99.236	0	0.11732	0.00063839	NaN	40.778	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	339920			18603	11421	15169	15191							0.20542714970042653
IIVAKIKHV	9	Unmodified	_IIVAKIKHV_					0	0	0			REV__ENSG00000148156|ENST00000374667|ACTL7B	REV__ENSG00000148156|ENST00000374667|ACTL7B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.80841064453125	2	510.850045	1019.68554	-1.2919	-0.00065999	0.78399	0.0004005	-0.50796	-0.00025949	510.85064815363296	100.56	0.31117	98.293	98.083	98.394	-2.2665					9	5	2	0	0	0	0.027462	1	9008	9008		19.36	11.67	1	10492	+		18604	20092	15170	15192	20643	20643					0.17648079887305812
IIVARNFK	8	Unmodified	_IIVARNFK_					0	0	0		tr|A0A7D6ZK53|A0A7D6ZK53_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11185PE=3SV=1	tr|A0A7D6ZK53|A0A7D6ZK53_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11185PE=3SV=1	tr|A0A7D6ZK53|A0A7D6ZK53_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11185PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	480.80096435546875	2	480.803094	959.591636	-3.5276	-0.0016961	-0.80978	-0.00038934	-4.3374	-0.0020854	480.80256125573777	150.83	1.6209	150.61	150.17	151.79	-0.22696					93	32	4	0	0	0	0.74361	4	15340	15281;15303;15333;15340		29.842	6.8048	1	676150			18605	35657	15171	15193	20644;20645;20646;20647	20647					0.1102236078503438
IIVARNFK	8	Unmodified	_IIVARNFK_					0	0	0		tr|A0A7D6ZK53|A0A7D6ZK53_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11185PE=3SV=1	tr|A0A7D6ZK53|A0A7D6ZK53_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11185PE=3SV=1	tr|A0A7D6ZK53|A0A7D6ZK53_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11185PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	480.80078125	2	480.803094	959.591636	-4.4906	-0.0021591	0.15627	7.5133E-05	-4.3343	-0.002084	480.8030459689351	151.04	2.008	150.08	149.7	151.71	-0.95647					103	39	4	0	0	0	0.74361	2	12845	12823;12845		29.842	1.5873	1	1013500			18606	35657	15171	15193	20648;20649	20649					0.1102236078503438
IIVARNFK	8	Unmodified	_IIVARNFK_					0	0	0		tr|A0A7D6ZK53|A0A7D6ZK53_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11185PE=3SV=1	tr|A0A7D6ZK53|A0A7D6ZK53_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11185PE=3SV=1	tr|A0A7D6ZK53|A0A7D6ZK53_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11185PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.80126953125	2	480.803094	959.591636	-3.2353	-0.0015556	-1.1249	-0.00054087	-4.3603	-0.0020964	480.80242897085384	151.49	1.9682	150.06	149.63	151.6	-1.4344					128	43	5	0	0	0	0.75991	1	14981	14981		21.702	0	1	1260100			18607	35657	15171	15193	20650	20650					0.1102236078503438
IIVDLARYV	9	Unmodified	_IIVDLARYV_					0	0	0		FNBP1|p.Q503Pfs*31|1|0.07|ENSG00000187239|chr9:129900470-129900471|-/GA|frameshift_variant;nc|ENSG00000187239|Q96RU3-4|FNBP1;nc|ENSG00000187239|Q96RU3-3|FNBP1;nc|ENSG00000187239|Q96RU3-5|FNBP1;nc|ENSG00000187239|Q96RU3-2|FNBP1;ENSG00000187239|ENST00000446176|FNBP1;ENST00000491905.1_1_9:132740674-132740860:-|nuORF	FNBP1|p.Q503Pfs*31|1|0.07|ENSG00000187239|chr9:129900470-129900471|-/GA|frameshift_variant	FNBP1|p.Q503Pfs*31|1|0.07|ENSG00000187239|chr9:129900470-129900471|-/GA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	531.322021484375	2	531.321317	1060.62808	1.426	0.00075768	0.39167	0.0002081	1.8177	0.00096578	531.3214310084473	124.85	0.46284	124.85	124.61	125.07	0					18	9	2	0	0	0	0.1944	1	14416	14416		77.318	29.66	1	369950			18608	8394	15172	15194	20651	20651					0.1001919289108173
IIVDPKFR	8	Unmodified	_IIVDPKFR_					0	0	0			REV__tr|A0A7D6ZVS6|A0A7D6ZVS6_9CLOTAldehyde-alcoholdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=adhEPE=3SV=1	REV__tr|A0A7D6ZVS6|A0A7D6ZVS6_9CLOTAldehyde-alcoholdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=adhEPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	494.29998779296875	2	494.302927	986.591301	-3.5514	-0.0017554	-0.56102	-0.00027732	-4.1124	-0.0020328	494.3024982316327	153.87	1.3713	153.64	153.28	154.65	-0.22696					70	29	4	0	0	0	0.75915	1	15647	15647		20.482	0	1	375650	+		18609	32259	15173	15195	20652	20652					0.09746941065179726
IIVDPKFR	8	Unmodified	_IIVDPKFR_					0	0	0			REV__tr|A0A7D6ZVS6|A0A7D6ZVS6_9CLOTAldehyde-alcoholdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=adhEPE=3SV=1	REV__tr|A0A7D6ZVS6|A0A7D6ZVS6_9CLOTAldehyde-alcoholdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=adhEPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	494.300537109375	2	494.302927	986.591301	-5.5844	-0.0027604	1.3123	0.0006487	-4.2721	-0.0021117	494.3034903870968	153.96	1.4815	152.95	152.62	154.1	-1.0076					78	30	5	0	0	0	0.75661	1	13198	13198		19.36	1.0356	1	602630	+		18610	32259	15173	15195	20653	20653					0.09746941065179726
IIVDVDLF	8	Unmodified	_IIVDVDLF_					0	0	0			REV__ENST00000596690.1_2_19:52403157-52403544:-|nuORF	REV__ENST00000596690.1_2_19:52403157-52403544:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.2673645019531	2	467.268219	932.521884	0.056921	2.6597E-05	-2.6584	-0.0012422	-2.6014	-0.0012156	467.2668397699727	22.187	1.3509	20.848	20.321	21.672	-1.3386					61	30	3	0	0	0	0.74361	1	325	325		29.842	0	1	128670	+		18611	24742	15174	15196	20654	20654					0.05292437325761057
IIVEGRIFKAH	11	Unmodified	_IIVEGRIFKAH_					0	0	0		ENSG00000273274|ENST00000609129|ZBTB8B;nc|ENSG00000273274|Q8NAP8-2|ZBTB8B	ENSG00000273274|ENST00000609129|ZBTB8B	ENSG00000273274|ENST00000609129|ZBTB8B	MULTI-MSMS	OvCa9_classI_Rep2	2	641.882080078125	2	641.885147	1281.75574	-4.6434	-0.0029805	0.6524	0.00041876	-3.991	-0.0025618	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.69808	1	15580	15580		30.318	2.2362	1	543390			18612	9556	15175	15197	20655	20655					0.12613333485137446
IIVERHKP	8	Unmodified	_IIVERHKP_					0	0	0			REV__tr|A0A7D6ZWK4|A0A7D6ZWK4_9CLOTDUF1573domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19270PE=4SV=1	REV__tr|A0A7D6ZWK4|A0A7D6ZWK4_9CLOTDUF1573domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19270PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.3056640625	2	496.306001	990.597449	-4.4709	-0.0022189	0.17198	8.5355E-05	-4.2989	-0.0021336	496.30601677718755	154.78	0.74774	153.33	153.16	153.9	-1.4516					30	18	2	0	0	0	0.74209	1	15355	15355		12.959	0	1	66174	+		18613	32292	15176	15198	20656	20656					0.10177459296698999
IIVFCTILI	9	Unmodified	_IIVFCTILI_					0	0	0			REV__ENSG00000173612|ENST00000310357|GPRC6A	REV__ENSG00000173612|ENST00000310357|GPRC6A	MULTI-MSMS	OvCa99_classI_Rep5	1	517.8206176757812	2	517.819564	1033.62458	0.65328	0.00033828	-0.30414	-0.00015749	0.34913	0.00018079	517.8192290042126	150.79	1.1612	150.79	150.44	151.6	0					68	22	4	0	0	0	0.42057	1	17661	17661		50.025	11.218	1	403000	+		18614	21790	15177	15199	20657	20657					0.10910806792890071
IIVFCTILI	9	Unmodified	_IIVFCTILI_					0	0	0			REV__ENSG00000173612|ENST00000310357|GPRC6A	REV__ENSG00000173612|ENST00000310357|GPRC6A	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	517.819564	1033.62458	0.65328	0.00033828	-0.30414	-0.00015749	0.34913	0.00018079	517.8192290042126	150.79	1.1612	150.79	150.44	151.6	0	0	0	NaN	50.025	68	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	403000	+		18615	21790	15177	15199							0.10910806792890071
IIVGLIFKFK	10	Unmodified	_IIVGLIFKFK_					0	0	0		tr|A0A7D6VNJ5|A0A7D6VNJ5_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12840PE=4SV=1	tr|A0A7D6VNJ5|A0A7D6VNJ5_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12840PE=4SV=1	tr|A0A7D6VNJ5|A0A7D6VNJ5_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12840PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	589.3887329101562	2	589.389003	1176.76345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.5	1	20.5	20	21	0								0	0	0	0.16869	1	33	33		11.511	4.7755	1				18616	34709	15178	15200	20658	20658					0.18214092752668876
IIVGTVLII	9	Unmodified	_IIVGTVLII_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MSMS	OvCa99_classI_Rep5	1	470.82672119140625	2	470.825704	939.636855	0.66106	0.00031124	-0.10183	-4.7944E-05	0.55923	0.0002633	470.82550127095874	161.06	3.0909	161.06	159.47	162.56	0					174	61	3	0	0	0	0.057208	1	18810	18810		114.59	8.1706	1	597670			18617	9288	15179	15201	20659	20659					0.16462166527560385
IIVGVECSLP	10	Unmodified	_IIVGVECSLP_					0	0	0			REV__ENSG00000188060.7,RAB42,chr1,+,I1.1,28592400,28592494|81|9.67|2|intron	REV__ENSG00000188060.7,RAB42,chr1,+,I1.1,28592400,28592494|81|9.67|2|intron	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.8101196289062	2	515.286085	1028.55762	1.0282	0.00052983	-1.4426	-0.00074334	-0.41435	-0.00021351	515.2830461574166	109.66	0.57876	109.66	109.37	109.95	0					15	12	2	0	0	0	0.026939	1	12425	12425		24.203	4.206	1	54734	+		18618	22687	15180	15202	20660	20660					0.044481515111101544
IIVIDGKELN	10	Unmodified	_IIVIDGKELN_					0	0	0			REV__ENST00000472260.1_1_2:169713171-169721477:+|nuORF	REV__ENST00000472260.1_1_2:169713171-169721477:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	557.3316650390625	2	557.329339	1112.64412	2.0434	0.0011388	0.72403	0.00040352	2.7674	0.0015423	557.3297190627752	118.59	0.51965	118.59	118.44	118.96	0					15	10	2	0	0	0	0.5675	1	13611	13611		45.972	3.5761	1	124440	+		18619	20804	15181	15203	20661	20661					0.09230854337351957
IIVKELTG	8	Unmodified	_IIVKELTG_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	OvCa9_classI_Rep2	2	436.7742919921875	2	436.776211	871.537869	-1.3218	-0.00057733	-1.7819	-0.0007783	-3.1037	-0.0013556	436.77534043072393	144.04	2.131	143.81	143.2	145.33	-0.22697					119	42	4	0	0	0	0.75723	1	14529	14529		23.042	0	1	537180			18620	2891	15182	15204	20662	20662					0.0969614356265538
IIVKELTG	8	Unmodified	_IIVKELTG_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	OvCa9_classI_Rep3	3	436.77471923828125	2	436.776211	871.537869	-2.6718	-0.001167	-0.40157	-0.0001754	-3.0734	-0.0013424	436.7759504548302	144.44	1.6886	143.47	143.1	144.79	-0.97299					107	33	5	0	0	0	0.73626	2	12077	12077;12111		33.516	6.5047	1	989010			18621	2891	15182	15204	20663;20664	20663					0.0969614356265538
IIVKLLVKK	9	Unmodified	_IIVKLLVKK_					0	0	0			REV__ENSG00000075785|ENST00000265062|RAB7A	REV__ENSG00000075785|ENST00000265062|RAB7A	MULTI-SECPEP	OvCa9_classI_Rep3	3	527.35595703125	2	527.391545	1052.76854	-1.574	-0.00083013	-3.6512	-0.0019256	-5.2252	-0.0027557	527.3898769902343	84.844	0.39239	82.583	82.407	82.799	-2.261					12	7	2	0	0	0	0.027462	1	4949	4949		25.45	1.2474	1	18648	+		18622	16978	15183	15205	20665	20665					0.24426396615308477
IIVKNSNKF	9	Unmodified	_IIVKNSNKF_					0	0	0			REV__tr|A0A7D6W2W5|A0A7D6W2W5_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07845PE=4SV=1	REV__tr|A0A7D6W2W5|A0A7D6W2W5_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07845PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8170166015625	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.67509	1	13991	13991		23.042	2.0956	1	166960	+		18623	31906	15184	15206	20666	20666					0.09498308748334239
IIVKNSNKF	9	Unmodified	_IIVKNSNKF_					0	0	0			REV__tr|A0A7D6W2W5|A0A7D6W2W5_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07845PE=4SV=1	REV__tr|A0A7D6W2W5|A0A7D6W2W5_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07845PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8194580078125	2	531.818941	1061.62333	0.089047	4.7357E-05	-3.7428	-0.0019905	-3.6538	-0.0019431	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.5811	1	13941	13941		34.173	3.6689	1	263230	+		18624	31906	15184	15206	20667	20667					0.09498308748334239
IIVLINVFTY	10	Unmodified	_IIVLINVFTY_					0	0	0		tr|A0A553SQ00|A0A553SQ00_NIACIXylosetransportsystempermeaseproteinXylHOS=NialliacirculansOX=1397GN=CEQ21_14865PE=4SV=1	tr|A0A553SQ00|A0A553SQ00_NIACIXylosetransportsystempermeaseproteinXylHOS=NialliacirculansOX=1397GN=CEQ21_14865PE=4SV=1	tr|A0A553SQ00|A0A553SQ00_NIACIXylosetransportsystempermeaseproteinXylHOS=NialliacirculansOX=1397GN=CEQ21_14865PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8557739257812	2	597.860275	1193.706	-2.4902	-0.0014888	-4.2057	-0.0025144	-6.6959	-0.0040032	597.8575960796461	144.35	4.0594	144.12	142.06	146.12	-0.22696					210	81	4	0	0	0	0.7759	1	14573	14573		21.96	3.6978	1	136500			18625	34099	15185	15207	20668	20668					0.11689205756488263
IIVLINVFTY	10	Unmodified	_IIVLINVFTY_					0	0	0		tr|A0A553SQ00|A0A553SQ00_NIACIXylosetransportsystempermeaseproteinXylHOS=NialliacirculansOX=1397GN=CEQ21_14865PE=4SV=1	tr|A0A553SQ00|A0A553SQ00_NIACIXylosetransportsystempermeaseproteinXylHOS=NialliacirculansOX=1397GN=CEQ21_14865PE=4SV=1	tr|A0A553SQ00|A0A553SQ00_NIACIXylosetransportsystempermeaseproteinXylHOS=NialliacirculansOX=1397GN=CEQ21_14865PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8563232421875	2	597.860275	1193.706	-3.1765	-0.0018991	-3.3266	-0.0019889	-6.5032	-0.003888	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.64063	3	14883	14828;14883;15050		37.159	7.9891	1	436470			18626	34099	15185	15207	20669;20670;20671	20670					0.11689205756488263
IIVLINVFTY	10	Unmodified	_IIVLINVFTY_					0	0	0		tr|A0A553SQ00|A0A553SQ00_NIACIXylosetransportsystempermeaseproteinXylHOS=NialliacirculansOX=1397GN=CEQ21_14865PE=4SV=1	tr|A0A553SQ00|A0A553SQ00_NIACIXylosetransportsystempermeaseproteinXylHOS=NialliacirculansOX=1397GN=CEQ21_14865PE=4SV=1	tr|A0A553SQ00|A0A553SQ00_NIACIXylosetransportsystempermeaseproteinXylHOS=NialliacirculansOX=1397GN=CEQ21_14865PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	597.85498046875	2	597.860275	1193.706	-2.7036	-0.0016164	-3.9017	-0.0023327	-6.6053	-0.0039491	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.64063	6	12377	12377;12475;12545;12661;12666;12675		37.159	8.0096	1	591030			18627	34099	15185	15207	20672;20673;20674;20675;20676;20677	20672					0.11689205756488263
IIVMLDILP	9	Unmodified	_IIVMLDILP_					0	0	0		tr|A0A553SSZ3|A0A553SSZ3_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_03870PE=4SV=1	tr|A0A553SSZ3|A0A553SSZ3_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_03870PE=4SV=1	tr|A0A553SSZ3|A0A553SSZ3_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_03870PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	513.8198852539062	2	513.817021	1025.61949	2.5638	0.0013173	3.2367	0.0016631	5.8005	0.0029804	513.8184941002062	107.9	0.63701	107.9	107.69	108.32	0					28	14	3	0	0	0	0.25214	1	12191	12191		68.485	8.1907	1	1023300			18628	34439	15186	15208	20678	20678					0.10770502930267867
IIVNLLHR	8	Unmodified	_IIVNLLHR_					0	0	0		tr|A0A7D6W2J3|A0A7D6W2J3_9CLOTTrypsin-likepeptidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06460PE=4SV=1	tr|A0A7D6W2J3|A0A7D6W2J3_9CLOTTrypsin-likepeptidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06460PE=4SV=1	tr|A0A7D6W2J3|A0A7D6W2J3_9CLOTTrypsin-likepeptidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06460PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	489.31396484375	2	489.316369	976.618185	-2.9034	-0.0014207	-1.3918	-0.00068104	-4.2952	-0.0021017	489.3155696010777	150.8	1.5265	150.57	150.17	151.7	-0.22696					77	30	4	0	0	0	0.75661	1	15310	15310		19.36	3.7238	1	380370			18629	35433	15187	15209	20679	20679					0.12894049676378927
IIVNLLHR	8	Unmodified	_IIVNLLHR_					0	0	0		tr|A0A7D6W2J3|A0A7D6W2J3_9CLOTTrypsin-likepeptidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06460PE=4SV=1	tr|A0A7D6W2J3|A0A7D6W2J3_9CLOTTrypsin-likepeptidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06460PE=4SV=1	tr|A0A7D6W2J3|A0A7D6W2J3_9CLOTTrypsin-likepeptidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06460PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	489.31414794921875	2	489.316369	976.618185	-5.0625	-0.0024771	0.75357	0.00036874	-4.3089	-0.0021084	489.3166161919068	151.03	1.2523	150.08	149.76	151.01	-0.95647					68	24	4	0	0	0	0.74595	1	12861	12861		14.664	1.7049	1	299480			18630	35433	15187	15209	20680	20680					0.12894049676378927
IIVPPLKTQAS	11	Unmodified	_IIVPPLKTQAS_					0	0	0		nc|ENSG00000064393|Q9H2X6-2|HIPK2;nc|ENSG00000064393|Q9H2X6-3|HIPK2;ENSG00000064393|ENST00000406875|HIPK2	nc|ENSG00000064393|Q9H2X6-2|HIPK2	nc|ENSG00000064393|Q9H2X6-2|HIPK2	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8580932617188	2	583.860806	1165.70706	-6.9005	-0.0040289	3.2924	0.0019223	-3.608	-0.0021066	583.8626216517176	154.95	1.1831	153.88	153.56	154.74	-1.073					81	29	4	0	0	0	0.72479	1	13338	13338		18.262	0.89712	1	200380			18631	1299	15188	15210	20681	20681					0.13083420125371958
IIVQFRHS	8	Unmodified	_IIVQFRHS_					0	0	0			REV__nc|ENSG00000122986|Q96D96-4|HVCN1	REV__nc|ENSG00000122986|Q96D96-4|HVCN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.7992858886719	2	500.290351	998.566149	-0.25733	-0.00012874	-3.7833	-0.0018927	-4.0406	-0.0020215	500.28819535831167	42.99	0.60306	42.99	42.709	43.312	0					38	13	5	0	0	0	0.028476	1	2839	2839		60.294	0	1	1696800	+		18632	18619	15189	15211	20682	20682					0.06680886262608965
IIVQLQPDD	9	Unmodified	_IIVQLQPDD_					0	0	0			REV__ENSG00000197706|ENST00000343399|OR6C74	REV__ENSG00000197706|ENST00000343399|OR6C74	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.783935546875	2	520.784764	1039.55498	0.47273	0.00024619	-4.2372	-0.0022067	-3.7644	-0.0019605	520.7836828713865	140.65	1.8116	139.15	138.76	140.57	-1.4952					71	34	4	0	0	0	0.62352	1	13705	13705		29.15	4.9468	1	123170	+		18633	22945	15190	15212	20683	20683					0.036780193777985914
IIVQSFHRKK	10	Unmodified	_IIVQSFHRKK_					0	0	0			REV__ENSG00000185869|ENST00000391711|ZNF829	REV__ENSG00000185869|ENST00000391711|ZNF829	MULTI-MSMS	OvCa9_classI_Rep3	3	628.3822631835938	2	628.385314	1254.75608	-4.0512	-0.0025457	-0.39444	-0.00024786	-4.4456	-0.0027935	628.3849132400738	150.53	4.7174	149.58	148	152.71	-0.95647					178	94	2	0	0	0	0.78463	1	12927	12927		20.947	0.95016	1	419100	+		18634	22538	15191	15213	20684	20684					0.13888753204969362
IIVRLPPLI	9	Unmodified	_IIVRLPPLI_					0	0	0		ENSG00000186088|ENST00000257626|GSAP;ENST00000482866.5_1_7:76941390-76943837:-|nuORF;ENST00000474686.5_1_7:76940677-76943837:-|nuORF;nc|ENSG00000186088|A4D1B5-4|GSAP	ENSG00000186088|ENST00000257626|GSAP	ENSG00000186088|ENST00000257626|GSAP	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3595581054688	2	517.360245	1032.70594	0.038556	1.9947E-05	-0.44941	-0.00023251	-0.41085	-0.00021256	517.3599133873521	135.24	1.9126	135.01	134.59	136.5	-0.22696					104	38	4	0	0	0	0.44294	2	13420	13420;13444		47.916	6.5047	1	602160			18635	8312	15192	15214	20685;20686	20685					0.19089250547131087
IIVRLPPLI	9	Unmodified	_IIVRLPPLI_					0	0	0		ENSG00000186088|ENST00000257626|GSAP;ENST00000482866.5_1_7:76941390-76943837:-|nuORF;ENST00000474686.5_1_7:76940677-76943837:-|nuORF;nc|ENSG00000186088|A4D1B5-4|GSAP	ENSG00000186088|ENST00000257626|GSAP	ENSG00000186088|ENST00000257626|GSAP	MULTI-MSMS	OvCa9_classI_Rep3	3	517.3602294921875	2	517.360245	1032.70594	-0.63272	-0.00032734	0.17774	9.1954E-05	-0.45498	-0.00023539	517.3601946717101	136.63	2.1947	135.53	135.15	137.35	-1.1023					115	44	4	0	0	0	0.27546	1	11133	11133		65.803	7.9919	1	468020			18636	8312	15192	15214	20687	20687					0.19089250547131087
IIVRLPPLI	9	Unmodified	_IIVRLPPLI_					0	0	0		ENSG00000186088|ENST00000257626|GSAP;ENST00000482866.5_1_7:76941390-76943837:-|nuORF;ENST00000474686.5_1_7:76940677-76943837:-|nuORF;nc|ENSG00000186088|A4D1B5-4|GSAP	ENSG00000186088|ENST00000257626|GSAP	ENSG00000186088|ENST00000257626|GSAP	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.3604736328125	2	517.360245	1032.70594	1.8735	0.00096925	-2.5299	-0.0013089	-0.65645	-0.00033962	517.3588470360384	137.04	2.3917	135.5	135.08	137.47	-1.5437					132	51	5	0	0	0	0.27546	2	13336	13336;13348		65.803	15.779	1	756000			18637	8312	15192	15214	20688;20689	20688					0.19089250547131087
IIVSYIVKM	9	Unmodified	_IIVSYIVKM_					0	0	0		tr|A0A7D7AD99|A0A7D7AD99_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22240PE=4SV=1	tr|A0A7D7AD99|A0A7D7AD99_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22240PE=4SV=1	tr|A0A7D7AD99|A0A7D7AD99_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22240PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.3401489257812	2	533.322471	1064.63039	-6.183	-0.0032975	4.3914	0.002342	-1.7916	-0.0009555	533.3242810071571	156.98	0.22714	155.43	155.33	155.55	-1.545					6	5	2	0	0	0	0.027462	1	15522	15522		30.504	17.692	1	14668			18638	36238	15193	15215	20690	20690					0.10065905304531952
IIVVKYRLL	9	Unmodified	_IIVVKYRLL_					0	0	0			REV__ENSG00000150990|ENST00000308736|DHX37	REV__ENSG00000150990|ENST00000308736|DHX37	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.264892578125	2	558.878802	1115.74305	2.9538	0.0016508	-0.23305	-0.00013025	2.7208	0.0015206	558.8783582063395	86.314	0.3577	86.314	86.113	86.471	0					12	8	2	0	0	0	0.027462	1	9108	9108		12.959	0	1	110080	+		18639	20209	15194	15216	20691	20691					0.18980922092896435
IIVVVLLMGF	10	Unmodified	_IIVVVLLMGF_					0	0	0		ENSG00000106780|ENST00000373930|MEGF9	ENSG00000106780|ENST00000373930|MEGF9	ENSG00000106780|ENST00000373930|MEGF9	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.7819213867188	2	552.348489	1102.68242	-0.12998	-7.1792E-05	3.7312	0.0020609	3.6012	0.0019891	552.3504343917461	116.37	0.74255	116.24	115.92	116.67	-0.12869					21	14	2	0	0	0	0.027147	1	11083	11083		19.36	1.892	1	14379			18640	2574	15195	15217	20692	20692					0.13519068718301241
IIVYIFPF	8	Unmodified	_IIVYIFPF_					0	0	0			REV__tr|A0A553SRA9|A0A553SRA9_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_00720PE=3SV=1	REV__tr|A0A553SRA9|A0A553SRA9_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_00720PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.8260192871094	2	506.299322	1010.58409	-0.92391	-0.00046777	1.5182	0.00076869	0.59434	0.00030091	506.2999173700716	77.023	1.0438	75.234	74.372	75.416	-1.7894					30	19	2	0	0	0	0.028476	1	6400	6400		33.493	0	1	37808	+		18641	30713	15196	15218	20693	20693					0.07922208464754021
IIWIKDPK	8	Unmodified	_IIWIKDPK_					0	0	0			REV__tr|A0A7D6VSH1|A0A7D6VSH1_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16495PE=4SV=1	REV__tr|A0A7D6VSH1|A0A7D6VSH1_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16495PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	506.8095703125	2	506.813128	1011.6117	-1.1259	-0.00057063	-3.6411	-0.0018454	-4.767	-0.002416	506.81130069607957	99.678	3.3722	98.848	98.219	101.59	-0.83051					157	66	4	0	0	0	0.50674	1	9129	9129		76.847	10.417	1	2351400	+		18642	31502	15197	15219	20694	20694					0.1063611172498895
IIWIQILL	8	Unmodified	_IIWIQILL_					0	0	0			REV__tr|A0A7D6VR73|A0A7D6VR73_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04420PE=3SV=1	REV__tr|A0A7D6VR73|A0A7D6VR73_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04420PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	506.3316650390625	2	506.333696	1010.65284	-0.48567	-0.00024591	-3.4639	-0.0017539	-3.9496	-0.0019998	506.33188661899624	122.71	0.88946	122.49	122.22	123.11	-0.21803					45	17	3	0	0	0	0.57589	1	11890	11890		69.093	2.6637	1	120630	+		18643	31393	15198	15220	20695	20695					0.14793872764482785
IIWLPTIV	8	Unmodified	_IIWLPTIV_					0	0	0			REV__ENST00000476848.5_1_21:43803140-43803371:-|nuORF	REV__ENST00000476848.5_1_21:43803140-43803371:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.2606201171875	2	477.804771	953.59499	-0.52736	-0.00025198	-3.7502	-0.0017919	-4.2776	-0.0020438	477.80280616743704	39.542	1.2407	39.542	39.332	40.573	0					53	27	3	0	0	0	0.028476	1	2395	2395		37.028	6.5248	1	1234700	+		18644	16031	15199	15221	20696	20696					0.11633610839032826
IIWTLVIGA	9	Unmodified	_IIWTLVIGA_					0	0	0			REV__ENSG00000070915|ENST00000563236|SLC12A3	REV__ENSG00000070915|ENST00000563236|SLC12A3	MULTI-MSMS	OvCa99_classI_Rep5	1	493.30657958984375	2	493.307678	984.600803	0.66511	0.0003281	-2.7613	-0.0013622	-2.0962	-0.0010341	493.30625366563197	139.96	3.1759	139.96	139.56	142.73	0					177	64	5	0	0	0	0.42057	1	16426	16426		50.025	2.1089	1	2536200	+		18645	16893	15200	15222	20697	20697					0.10788709350697445
IIWVRAPL	8	Unmodified	_IIWVRAPL_					0	0	0		ENST00000262187.9_1_7:151163972-151164125:-|nuORF	ENST00000262187.9_1_7:151163972-151164125:-|nuORF	ENST00000262187.9_1_7:151163972-151164125:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.3074645996094	2	484.308013	966.601472	3.7964	0.0018386	-3.676	-0.0017803	0.12041	5.8313E-05	484.3060586662709	131.36	1.0726	129.88	129.64	130.72	-1.4779					54	21	4	0	0	0	0.74361	1	12652	12652		29.842	1.9593	1	95427			18646	9885	15201	15223	20698	20698					0.11683548790404075
IIYDHQKFF	9	Unmodified	_IIYDHQKFF_					0	0	0			REV__nc|ENSG00000156535|Q6YHK3-3|CD109	REV__nc|ENSG00000156535|Q6YHK3-3|CD109	MULTI-MSMS	OvCa99_classI_Rep5	1	605.817138671875	2	605.816399	1209.61824	0.98318	0.00059562	-2.1072	-0.0012766	-1.124	-0.00068095	605.8149294907378	152.12	3.19	152.12	151.74	154.93	0					156	68	3	0	0	0	0.50149	1	17961	17961		42.396	0	1	906760	+		18647	20486	15202	15224	20699	20699					0.02182004885708011
IIYEIIKYL	9	Unmodified	_IIYEIIKYL_					0	0	0			REV__tr|A0A553SQM8|A0A553SQM8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07960PE=4SV=1	REV__tr|A0A553SQM8|A0A553SQM8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07960PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3558349609375	2	584.354825	1166.6951	-0.5033	-0.0002941	3.5157	0.0020544	3.0124	0.0017603	584.3567763295431	142.42	4.015	140.98	138.81	142.83	-1.4427					242	77	4	0	0	0	0.59983	1	14071	14071		31.955	0.42505	1	214670	+		18648	30647	15203	15225	20700	20700					0.1184180338218539
IIYFEPLF	8	Unmodified	_IIYFEPLF_					0	0	0		nc|nan|O96002|CXorf1	nc|nan|O96002|CXorf1	nc|nan|O96002|CXorf1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.768798828125	2	521.286411	1040.55827	-0.093133	-4.8549E-05	-2.0648	-0.0010764	-2.1579	-0.0011249	521.2850857360946	74.005	0.45702	74.005	73.829	74.286	0					20	11	3	0	0	0	0.028476	1	7325	7325		29.842	13.368	1	994970			18649	15417	15204	15226	20701	20701					0.039613142224425246
IIYFHGNAGNI	11	Unmodified	_IIYFHGNAGNI_					0	0	0		ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.2392272949219	3	406.880379	1217.61931	0.79406	0.00032309	0.062352	2.537E-05	0.85641	0.00034846	406.88113990441997	41.308	0.40041	41.308	41.149	41.55	0					12	8	2	0	0	0	0.025611	1	2561	2561		13.508	0	1	32278			18650	4805	15205	15227	20702	20702					0.01920219254634503
IIYFLQTIIF	10	Unmodified	_IIYFLQTIIF_					0	0	0			REV__tr|A0A553SND6|A0A553SND6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24265PE=4SV=1	REV__tr|A0A553SND6|A0A553SND6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24265PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	424.2532958984375	3	424.253042	1269.7373	0.23762	0.00010081	0.32857	0.0001394	0.56619	0.00024021	424.25320107299643	21.851	0.24108	21.851	21.723	21.964	0					16	8	3	0	0	0	0.85358	1	153	153		7.8045	1.1449	1	31120	+		18651	30411	15206	15228	20703	20703					0.11321778790556891
IIYIYNEI	8	Unmodified	_IIYIYNEI_					0	0	0		tr|A0A7D7A075|A0A7D7A075_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08855PE=4SV=1	tr|A0A7D7A075|A0A7D7A075_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08855PE=4SV=1	tr|A0A7D7A075|A0A7D7A075_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08855PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.3036499023438	2	520.786776	1039.559	1.6449	0.00085662	-3.4144	-0.0017782	-1.7695	-0.00092154	520.7852309137496	106.13	0.83203	106.13	105.66	106.49	0					30	18	3	0	0	0	0.028476	1	11936	11936		44.531	0	1	236930			18652	35988	15207	15229	20704	20704					0.04080108871517041
IIYKELSKID	10	Unmodified	_IIYKELSKID_					0	0	0			REV__IPPK-IARS|1|fusion	REV__IPPK-IARS|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	611.3551025390625	2	611.358096	1220.70164	-3.7398	-0.0022864	0.47754	0.00029195	-3.2623	-0.0019944	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.79213	1	15196	15196		19.997	0	1	331570	+		18653	22809	15208	15230	20705	20705					0.10011696542892423
IIYQERHLL	9	Unmodified	_IIYQERHLL_					0	0	0			REV__tr|A0A553SGG0|A0A553SGG0_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_10750PE=4SV=1	REV__tr|A0A553SGG0|A0A553SGG0_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_10750PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	592.8250732421875	2	592.842948	1183.67134	1.4564	0.00086341	1.515	0.00089817	2.9714	0.0017616	592.8444962708254	97.098	0.24561	94.673	94.516	94.761	-2.4256					6	4	2	0	0	0	0.027462	1	8600	8600		31.955	4.0726	1	10062	+		18654	29696	15209	15231	20706	20706					0.08685382668363673
IIYRFLTL	8	Unmodified	_IIYRFLTL_					0	0	0		ENSG00000179562|ENST00000321407|GCC1	ENSG00000179562|ENST00000321407|GCC1	ENSG00000179562|ENST00000321407|GCC1	MSMS	OvCa99_classI_Rep5	1	519.8214111328125	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.39	1	136.39	135.89	136.89	0								0	0	0	0.30129	1	15900	15900		71.378	5.5747	1				18655	7830	15210	15232	20707	20707					0.11004398242016578
IIYRQIFMLKK	11	Unmodified	_IIYRQIFMLKK_					0	0	0			REV__tr|A0A7D6VXX3|A0A7D6VXX3_9CLOTYcxBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14365PE=4SV=1	REV__tr|A0A7D6VXX3|A0A7D6VXX3_9CLOTYcxBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14365PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.7785949707031	3	484.963497	1451.86866	-0.83271	-0.00040383	0.91179	0.00044219	0.079083	3.8352E-05	485.2982100979359	28.265	0.84735	28.265	27.891	28.739	0					21	16	2	0	0	0	0.026505	1	964	964		3.026	0.33792	1	21082	+		18656	31795	15211	15233	20708	20708					0.16080265886807865
IIYSKGIAFK	10	Unmodified	_IIYSKGIAFK_					0	0	0		tr|A0A553SRF2|A0A553SRF2_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00965PE=4SV=1	tr|A0A553SRF2|A0A553SRF2_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00965PE=4SV=1	tr|A0A553SRF2|A0A553SRF2_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00965PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.8070678710938	2	570.344792	1138.67503	1.5732	0.00089727	-3.7123	-0.0021173	-2.1391	-0.00122	570.3425943758855	98.439	0.30676	98.439	98.376	98.683	0					12	6	2	0	0	0	0.026734	1	10843	10843		47.657	3.5405	1	122810			18657	34258	15212	15234	20709	20709					0.11124052442210086
IIYWVIIV	8	Unmodified	_IIYWVIIV_					0	0	0		tr|A0A553SKS7|A0A553SKS7_NIACIDUF456familyproteinOS=NialliacirculansOX=1397GN=CEQ21_19190PE=4SV=1	tr|A0A553SKS7|A0A553SKS7_NIACIDUF456familyproteinOS=NialliacirculansOX=1397GN=CEQ21_19190PE=4SV=1	tr|A0A553SKS7|A0A553SKS7_NIACIDUF456familyproteinOS=NialliacirculansOX=1397GN=CEQ21_19190PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	509.8058776855469	2	509.820421	1017.62629	0.12067	6.1521E-05	2.272	0.0011583	2.3927	0.0012198	509.8237857007032	111.14	0.19685	111	110.88	111.08	-0.13961					5	3	2	0	0	0	0.028476	1	10479	10479		43.626	4.6046	1	14447			18658	33649	15213	15235	20710	20710					0.11818183873140242
IKAELTPKD	9	Unmodified	_IKAELTPKD_					0	0	0		nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;ENSG00000160111|ENST00000443236|CPAMD8	nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7959289550781	2	507.795132	1013.57571	0.21115	0.00010722	-0.66397	-0.00033716	-0.45283	-0.00022994	507.7947280281232	128.58	1.4414	127.13	126.85	128.29	-1.4565					78	28	4	0	0	0	0.37135	1	12316	12316		54.776	0	1	608480			18659	6038	15214	15236	20711	20711					0.06946609757471833
IKAGNGYT	8	Unmodified	_IKAGNGYT_					0	0	0			REV__tr|A0A7D6VMT7|A0A7D6VMT7_9CLOTCarbohydratebindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13070PE=4SV=1	REV__tr|A0A7D6VMT7|A0A7D6VMT7_9CLOTCarbohydratebindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13070PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	412.22064208984375	2	412.21906	822.423567	1.6419	0.00067681	3.6786	0.0015164	5.3204	0.0021932	412.2204880004127	129.13	1.1861	127.67	127.35	128.53	-1.4565					47	23	3	0	0	0	0.66704	1	12359	12359		50.025	3.2581	1	137310	+		18660	31147	15215	15237	20712	20712					0.005252538005606766
IKAIAAKHN	9	Unmodified	_IKAIAAKHN_					0	0	0		ENST00000498771.5_1_7:134132683-134136556:-|nuORF;ENSG00000085662|ENST00000285930|AKR1B1	ENST00000498771.5_1_7:134132683-134136556:-|nuORF	ENST00000498771.5_1_7:134132683-134136556:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	483.2988586425781	2	483.298176	964.581799	-0.027127	-1.311E-05	0.1527	7.3801E-05	0.12558	6.0691E-05	483.2980421880078	62.107	0.67476	62.107	61.826	62.501	0					39	15	4	0	0	0	0.34496	1	5510	5510		57.811	5.5121	1	1496800			18661	1735	15216	15238	20713	20713					0.09809172779648634
IKAIMHLLQ	9	Unmodified	_IKAIMHLLQ_					0	0	0		ENSG00000188352|ENST00000338382|FOCAD;ENST00000604103.1_1_9:20740247-20764921:+|nuORF	ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.8021850585938	2	533.825712	1065.63687	2.4215	0.0012927	3.6043	0.0019241	6.0259	0.0032168	533.8271817793297	94.92	0.25705	94.92	94.776	95.033	0					7	5	2	0	0	0	0.027462	1	10334	10334		29.15	3.5755	1	69809			18662	8469	15217	15239	20714	20714					0.10667843255919252
IKAKERGNL	9	Unmodified	_IKAKERGNL_					0	0	0			REV__ENSG00000118600|ENST00000261234|RXYLT1	REV__ENSG00000118600|ENST00000261234|RXYLT1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.288330078125	2	514.81419	1027.61383	-1.8153	-0.00093454	4.2439	0.0021848	2.4286	0.0012503	514.8161005608863	126.82	0.79471	125.38	125.19	125.99	-1.4357					19	15	2	0	0	0	0.027462	1	12097	12097		19.997	3.5236	1	14786	+		18663	18408	15218	15240	20715	20715					0.10112540462819197
IKAKRYEEELE	11	Unmodified	_IKAKRYEEELE_					0	0	0			REV__tr|A0A7D6ZE96|A0A7D6ZE96_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12805PE=4SV=1	REV__tr|A0A7D6ZE96|A0A7D6ZE96_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12805PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.2911376953125	3	469.920791	1406.74054	-0.22256	-0.00010459	-1.8826	-0.00088469	-2.1052	-0.00098928	470.2543581766899	46.131	0.67651	43.058	42.876	43.552	-3.0724					25	12	4	0	0	0	0.026302	1	2451	2451		17.167	7.9549	1	30553	+		18664	31942	15219	15241	20716	20716					0.05344377106621323
IKALAKLSSTY	11	Unmodified	_IKALAKLSSTY_					0	0	0		nc|ENSG00000174502|Q7LBE3-2|SLC26A9;ENSG00000174502|ENST00000367135|SLC26A9	nc|ENSG00000174502|Q7LBE3-2|SLC26A9	nc|ENSG00000174502|Q7LBE3-2|SLC26A9	MULTI-MSMS	OvCa9_classI_Rep3	3	597.85693359375	2	597.858264	1193.70197	-2.7036	-0.0016164	-0.53743	-0.00032131	-3.241	-0.0019377	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.71789	1	12432	12432		23.523	1.5628	1	591030			18665	15185	15220	15242	20717	20717					0.11287116262769814
IKALDLDHVME	11	Unmodified	_IKALDLDHVME_					0	0	0		tr|A0A553SM63|A0A553SM63_NIACIN-acetyltransferasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21980PE=4SV=1	tr|A0A553SM63|A0A553SM63_NIACIN-acetyltransferasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21980PE=4SV=1	tr|A0A553SM63|A0A553SM63_NIACIN-acetyltransferasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21980PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	428.7615051269531	3	428.560317	1282.65912	1.4291	0.00061247	2.5478	0.0010919	3.977	0.0017044	428.56123112963803	81.673	0.20042	81.673	81.493	81.694	0					6	4	2	0	0	0	0.026024	1	8420	8420		25.068	12.635	1	184930			18666	33806	15221	15243	20718	20718					0.02909978143020453
IKALKPNII	9	Unmodified	_IKALKPNII_					0	0	0			REV__tr|A0A7D6VRM3|A0A7D6VRM3_9CLOTMolybdopterin-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02060PE=4SV=1	REV__tr|A0A7D6VRM3|A0A7D6VRM3_9CLOTMolybdopterin-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02060PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.34173583984375	2	505.342052	1008.66955	2.4457	0.0012359	-3.7738	-0.0019071	-1.3281	-0.00067113	505.33994217432223	135.22	1.8729	133.68	133.11	134.99	-1.5437					124	33	5	0	0	0	0.36502	1	13109	13109		55.504	4.1688	1	1621800	+		18667	31428	15222	15244	20719	20719					0.16556373650416845
IKAQIKAMA	9	Unmodified	_IKAQIKAMA_					0	0	0			REV__ENSG00000115310|ENST00000337526|RTN4	REV__ENSG00000115310|ENST00000337526|RTN4	MULTI-MSMS	OvCa9_classI_Rep3	3	487.2921447753906	2	487.296788	972.579022	-3.3803	-0.0016472	-4.1977	-0.0020455	-7.578	-0.0036927	487.29467626542595	143.85	1.2856	142.86	142.44	143.72	-0.9903					55	25	3	0	0	0	0.6959	1	11996	11996		19.36	1.0356	1	83168	+		18668	18235	15223	15245	20720	20720					0.09163581330483339
IKAREKMAH	9	Unmodified	_IKAREKMAH_					0	0	0		tr|A0A7D7A0Z8|A0A7D7A0Z8_9CLOTAldehyde-alcoholdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=adhEPE=3SV=1	tr|A0A7D7A0Z8|A0A7D7A0Z8_9CLOTAldehyde-alcoholdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=adhEPE=3SV=1	tr|A0A7D7A0Z8|A0A7D7A0Z8_9CLOTAldehyde-alcoholdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=adhEPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.2832641601562	2	542.308218	1082.60188	-2.8284	-0.0015339	2.1676	0.0011755	-0.66081	-0.00035836	542.3092670055215	125.92	0.58757	124.51	124.14	124.73	-1.4143					19	11	2	0	0	0	0.027462	1	11956	11956		31.53	14.165	1	27112			18669	36015	15224	15246	20721	20721					0.06388600447962745
IKAVECVE	8	Unmodified	_IKAVECVE_					0	0	0		ENSG00000174307|ENST00000367311|PHLDA3	ENSG00000174307|ENST00000367311|PHLDA3	ENSG00000174307|ENST00000367311|PHLDA3	MULTI-MSMS	OvCa99_classI_Rep5	1	445.7385559082031	2	445.736228	889.457904	2.1699	0.00096719	4.2588	0.0018983	6.4287	0.0028655	445.73787661351395	105.8	0.70036	105.8	105.57	106.27	0					31	15	3	0	0	0	0.61436	1	11911	11911		60.972	5.4677	1	911140			18670	7455	15225	15247	20722	20722					0.008753338971700941
IKDDEWMMDIL	11	Unmodified	_IKDDEWMMDIL_					0	0	0		tr|A0A553SLS0|A0A553SLS0_NIACINucleotidyltransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21180PE=4SV=1	tr|A0A553SLS0|A0A553SLS0_NIACINucleotidyltransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21180PE=4SV=1	tr|A0A553SLS0|A0A553SLS0_NIACINucleotidyltransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21180PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	470.2206115722656	3	470.221084	1407.64142	3.0165	0.0014184	-3.8112	-0.0017921	-0.79474	-0.0003737	470.2192083599472	88.657	0.6165	88.657	88.426	89.043	0					31	14	3	0	0	0	0.62561	1	9433	9433		42.338	3.624	1	1312700			18671	33758	15226	15248	20723	20723					-0.04609105174154138
IKDDEWMMDIL	11	Unmodified	_IKDDEWMMDIL_					0	0	0		tr|A0A553SLS0|A0A553SLS0_NIACINucleotidyltransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21180PE=4SV=1	tr|A0A553SLS0|A0A553SLS0_NIACINucleotidyltransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21180PE=4SV=1	tr|A0A553SLS0|A0A553SLS0_NIACINucleotidyltransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21180PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	470.221084	1407.64142	1.7003	0.00079953	-4.5333	-0.0021316	-2.833	-0.0013321	470.2188742568698	89.87	0.99004	88.568	88.136	89.126	-1.302	0.072107	-0.0010628	NaN	42.338	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30249			18672	33758	15226	15248							-0.04609105174154138
IKDDEWMMDIL	11	Unmodified	_IKDDEWMMDIL_					0	0	0		tr|A0A553SLS0|A0A553SLS0_NIACINucleotidyltransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21180PE=4SV=1	tr|A0A553SLS0|A0A553SLS0_NIACINucleotidyltransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21180PE=4SV=1	tr|A0A553SLS0|A0A553SLS0_NIACINucleotidyltransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21180PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		3	470.221084	1407.64142	-0.24635	-0.00011584	-2.6787	-0.0012596	-2.925	-0.0013754	470.219820288107	90.506	0.81428	88.425	88.158	88.973	-2.0805	-0.070908	0.0015534	NaN	42.338	30	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61449			18673	33758	15226	15248							-0.04609105174154138
IKDDEWMMDIL	11	Unmodified	_IKDDEWMMDIL_					0	0	0		tr|A0A553SLS0|A0A553SLS0_NIACINucleotidyltransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21180PE=4SV=1	tr|A0A553SLS0|A0A553SLS0_NIACINucleotidyltransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21180PE=4SV=1	tr|A0A553SLS0|A0A553SLS0_NIACINucleotidyltransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21180PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	470.221084	1407.64142	0.36188	0.00017017	-3.0702	-0.0014437	-2.7083	-0.0012735	470.21943405000957	90.909	0.71962	88.334	88.11	88.829	-2.575	-0.16246	0.0010012	NaN	42.338	36	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57655			18674	33758	15226	15248							-0.04609105174154138
IKDDFSEFDNL	11	Unmodified	_IKDDFSEFDNL_					0	0	0		nc|ENSG00000072134|O95208-3|EPN2;nc|ENSG00000072134|O95208-2|EPN2;ENSG00000072134|ENST00000314728|EPN2;nc|ENSG00000072134|O95208-5|EPN2	nc|ENSG00000072134|O95208-3|EPN2	nc|ENSG00000072134|O95208-3|EPN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	447.73876953125	3	448.21023	1341.60886	0.71945	0.00032247	-3.0953	-0.0013873	-2.3758	-0.0010649	448.208726609468	62.623	0.35814	62.623	62.418	62.777	0					20	8	3	0	0	0	0.025818	1	5587	5587		12.957	0	1	551130			18675	1466	15227	15249	20724	20724					-0.04827852981111391
IKDEIKDAQ	9	Unmodified	_IKDEIKDAQ_					0	0	0		tr|A0A7D6ZZ47|A0A7D6ZZ47_9CLOTGTPpyrophosphokinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04650PE=4SV=1	tr|A0A7D6ZZ47|A0A7D6ZZ47_9CLOTGTPpyrophosphokinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04650PE=4SV=1	tr|A0A7D6ZZ47|A0A7D6ZZ47_9CLOTGTPpyrophosphokinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04650PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.2990112304688	2	530.287671	1058.56079	2.9934	0.0015874	-2.7412	-0.0014536	0.25218	0.00013373	530.789342637515	89.634	0.29156	89.634	89.556	89.848	0					9	6	2	0	0	0	0.027455	1	9580	9580		34.173	8.5985	1	133020			18676	35944	15228	15250	20725	20725					0.03385117889456524
IKDEIKDAQ	9	Unmodified	_IKDEIKDAQ_					0	0	0		tr|A0A7D6ZZ47|A0A7D6ZZ47_9CLOTGTPpyrophosphokinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04650PE=4SV=1	tr|A0A7D6ZZ47|A0A7D6ZZ47_9CLOTGTPpyrophosphokinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04650PE=4SV=1	tr|A0A7D6ZZ47|A0A7D6ZZ47_9CLOTGTPpyrophosphokinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04650PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	530.287671	1058.56079	-1.0045	-0.00053267	-6.5892	-0.0034942	-7.5937	-0.0040268	530.2829457894261	91.77	0.85799	89.746	89.231	90.089	-2.0241	0.0048204	-0.0039367	NaN	34.173	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27762			18677	35944	15228	15250							0.03385117889456524
IKDEIKDAQ	9	Unmodified	_IKDEIKDAQ_					0	0	0		tr|A0A7D6ZZ47|A0A7D6ZZ47_9CLOTGTPpyrophosphokinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04650PE=4SV=1	tr|A0A7D6ZZ47|A0A7D6ZZ47_9CLOTGTPpyrophosphokinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04650PE=4SV=1	tr|A0A7D6ZZ47|A0A7D6ZZ47_9CLOTGTPpyrophosphokinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04650PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	530.287671	1058.56079	-1.6335	-0.00086625	-6.7926	-0.003602	-8.4261	-0.0044683	530.2827779217022	92.386	0.71193	89.843	89.364	90.076	-2.5425	0.10206	-0.0041524	NaN	34.173	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26002			18678	35944	15228	15250							0.03385117889456524
IKDEPSGAPLG	11	Unmodified	_IKDEPSGAPLG_					0	0	0			REV__tr|A0A553SR23|A0A553SR23_NIACISugarphosphateisomerase/epimeraseOS=NialliacirculansOX=1397GN=CEQ21_00135PE=4SV=1	REV__tr|A0A553SR23|A0A553SR23_NIACISugarphosphateisomerase/epimeraseOS=NialliacirculansOX=1397GN=CEQ21_00135PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.8150024414062	2	542.287671	1082.56079	-1.3681	-0.00074189	2.3374	0.0012675	0.96931	0.00052564	542.2882758700151	43.824	0.43047	43.824	43.478	43.909	0					14	9	3	0	0	0	0.02523	1	2896	2896		54.722	8.7501	1	74060	+		18679	30683	15229	15251	20726	20726					0.02281117889469897
IKDGLEDYR	9	Unmodified	_IKDGLEDYR_					0	0	0		nc|ENSG00000145246|Q9P241-2|ATP10D;ENSG00000145246|ENST00000273859|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	nc|ENSG00000145246|Q9P241-2|ATP10D	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.8031005859375	2	554.785296	1107.55604	-0.44113	-0.00024473	0.24058	0.00013347	-0.20055	-0.00011126	554.7854076592475	66.393	0.36346	66.393	66.212	66.575	0					19	8	3	0	0	0	0.027453	1	6142	6142		54.776	5.3348	1	604940			18680	5212	15230	15252	20727	20727					0.006562337466903045
IKDHILKA	8	Unmodified	_IKDHILKA_					0	0	0			REV__ENSG00000216937|ENST00000639629|CCDC7	REV__ENSG00000216937|ENST00000639629|CCDC7	MULTI-SECPEP	OvCa9_classI_Rep3	3	469.80572509765625	2	469.295102	936.575651	-0.098915	-4.642E-05	-0.10638	-4.9925E-05	-0.2053	-9.6346E-05	469.2948869271254	88.822	1.433	86.691	86.315	87.748	-2.1309					56	28	3	0	0	0	0.028476	1	5549	5549		24.203	0	1	172870	+		18681	23324	15231	15253	20728	20728					0.10482654548138726
IKDHKIKL	8	Unmodified	_IKDHKIKL_					0	0	0			REV__nc|ENSG00000160856|Q96P31-4|FCRL3	REV__nc|ENSG00000160856|Q96P31-4|FCRL3	MULTI-MSMS	OvCa99_classI_Rep5	1	497.824951171875	2	497.824027	993.633501	0.32881	0.00016369	0.32558	0.00016208	0.6544	0.00032577	497.8239942846219	74.065	0.53734	74.065	73.829	74.366	0					35	13	4	0	0	0	0.53252	1	7302	7302		74.255	5.4682	1	3280400	+		18682	20676	15232	15254	20729	20729					0.13642916473554578
IKDILIQYDR	10	Unmodified	_IKDILIQYDR_					0	0	0		ENSG00000105193|ENST00000251453|RPS16;ENST00000339471.8_1_19:39923915-39924228:-|nuORF;ENST00000602153.5_1_19:39923915-39924074:-|nuORF;ENST00000599705.1_1_19:39923915-39924331:-|nuORF;ENST00000469078.5_1_19:20235852-20236290:+|nuORF	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-MSMS	OvCa99_classI_Rep5	1	426.24822998046875	3	426.246839	1275.71869	2.2184	0.00094557	0.87744	0.00037401	3.0958	0.0013196	426.2471747861201	77.452	1.0856	77.452	77.168	78.254	0					57	25	3	0	0	0	0.68624	1	7800	7800		32.034	0.39986	1	4012300			18683	2427	15233	15255	20730	20730					0.09185617148705205
IKDKFKEEE	9	Unmodified	_IKDKFKEEE_					0	0	0			REV__tr|A0A7D7A152|A0A7D7A152_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06195PE=3SV=1	REV__tr|A0A7D7A152|A0A7D7A152_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06195PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	583.8233032226562	2	583.308603	1164.60265	-0.91858	-0.00053582	0.39983	0.00023322	-0.51875	-0.00030259	583.3087907827164	107.36	0.62015	106.1	105.95	106.57	-1.267					13	11	2	0	0	0	0.027438	1	7669	7669		75.043	29.071	1	24305	+		18684	32472	15234	15256	20731	20731					0.026936735780054732
IKDLGYAEEIL	11	Unmodified	_IKDLGYAEEIL_					0	0	0			REV__KPNA6|p.E517Dfs*11|1|0.17|ENSG00000025800|chr1:32170833-32170834|AA/-|frameshift_variant	REV__KPNA6|p.E517Dfs*11|1|0.17|ENSG00000025800|chr1:32170833-32170834|AA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	632.3436279296875	2	632.345186	1262.67582	-0.49398	-0.00031236	-2.808	-0.0017757	-3.302	-0.002088	632.3433077508505	101.17	1.7454	98.901	98.652	100.4	-2.2665					71	34	3	0	0	0	0.19643	1	9074	9074		80.455	12.961	1	245770	+		18685	16570	15235	15257	20732	20732					0.05498802300621719
IKDLMREK	8	Unmodified	_IKDLMREK_					0	0	0		ENST00000559862.5_1_15:48451996-48470434:-|nuORF;nc|ENSG00000104177|Q9P2K5-4|MYEF2;nc|ENSG00000104177|Q9P2K5-2|MYEF2;nc|ENSG00000104177|Q9P2K5|MYEF2;ENSG00000104177|ENST00000324324|MYEF2	ENST00000559862.5_1_15:48451996-48470434:-|nuORF	ENST00000559862.5_1_15:48451996-48470434:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	516.7969360351562	2	516.797152	1031.57975	-0.51266	-0.00026494	-2.5067	-0.0012954	-3.0193	-0.0015604	516.7957504194654	71.361	1.1396	71.361	71.068	72.208	0					64	27	4	0	0	0	0.13946	1	6892	6892		134.81	3.7794	1	11376000			18686	2357	15236	15258	20733	20733					0.06522375979534445
IKDQKLLV	8	Unmodified	_IKDQKLLV_					0	0	0		ENSG00000136928|ENST00000259455|GABBR2	ENSG00000136928|ENST00000259455|GABBR2	ENSG00000136928|ENST00000259455|GABBR2	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.8120422363281	2	478.810585	955.606617	0.48308	0.0002313	-1.0882	-0.00052106	-0.60516	-0.00028976	478.80990582618574	59.939	1.6324	56.509	56.062	57.694	-3.43					84	32	4	0	0	0	0.50747	1	4035	4035		76.774	1.7308	1	732580			18687	4533	15237	15259	20734	20734					0.12703807862374106
IKDRWLVYA	9	Unmodified	_IKDRWLVYA_					0	0	0			REV__tr|A0A553SKF9|A0A553SKF9_NIACIAlanine--tRNAligaseOS=NialliacirculansOX=1397GN=alaSPE=3SV=1	REV__tr|A0A553SKF9|A0A553SKF9_NIACIAlanine--tRNAligaseOS=NialliacirculansOX=1397GN=alaSPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.3272705078125	2	582.332216	1162.64988	-1.2381	-0.00072101	-1.2229	-0.00071211	-2.461	-0.0014331	582.331313455156	28.066	0.24912	28.066	27.941	28.19	0					7	4	2	0	0	0	0.027462	1	895	895		13.775	0	1	22995	+		18688	30120	15238	15260	20735	20735					0.07505997639646012
IKEASKILL	9	Unmodified	_IKEASKILL_					0	0	0			REV__tr|A0A7D6ZXS2|A0A7D6ZXS2_9CLOTAmidohydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22965PE=4SV=1	REV__tr|A0A7D6ZXS2|A0A7D6ZXS2_9CLOTAmidohydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22965PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	507.8326110839844	2	507.831517	1013.64848	2.4648	0.0012517	-0.73868	-0.00037513	1.7261	0.00087659	507.8309964975342	86.756	0.82648	86.756	86.471	87.298	0					54	19	4	0	0	0	0.14855	1	9150	9150		85.161	5.4482	1	4826500	+		18689	32343	15239	15261	20736	20736					0.14220363550907678
IKEATPAKEF	10	Unmodified	_IKEATPAKEF_					0	0	0			REV__DNAH17|p.A3303_T3304insP|1|0.14|ENSG00000187775|chr17:78458632-78458633|-/AGG|inframe_insertion	REV__DNAH17|p.A3303_T3304insP|1|0.14|ENSG00000187775|chr17:78458632-78458633|-/AGG|inframe_insertion	MULTI-MSMS	OvCa9_classI_Rep3	3	567.314697265625	2	567.313689	1132.61282	2.0704	0.0011746	0.77426	0.00043925	2.8447	0.0016138	567.3139739099872	57.536	1.95	54.41	53.788	55.738	-3.1264					89	52	3	0	0	0	0.52439	1	1697	1697		51.193	3.5354	1	66904	+		18690	16312	15240	15262	20737	20737					0.05182281303223135
IKEAVRAKN	9	Unmodified	_IKEAVRAKN_					0	0	0		nc|ENSG00000168280|O60282-2|KIF5C;ENSG00000168280|ENST00000435030|KIF5C;ENST00000482151.1_2:149856814-149868187:+|nuORF	nc|ENSG00000168280|O60282-2|KIF5C	nc|ENSG00000168280|O60282-2|KIF5C	MULTI-MSMS	OvCa9_classI_Rep3	3	514.8159790039062	2	514.81419	1027.61383	1.4409	0.00074178	2.5022	0.0012881	3.943	0.0020299	514.8152681516877	127.8	1.4064	126.71	126.36	127.76	-1.0933					69	27	4	0	0	0	0.38529	1	10034	10034		53.351	1.0523	1	280660			18691	6886	15241	15263	20738	20738					0.10112540462819197
IKEDAKDRI	9	Unmodified	_IKEDAKDRI_					0	0	0			REV__nc|ENSG00000068885|Q9P2H3-2|IFT80	REV__nc|ENSG00000068885|Q9P2H3-2|IFT80	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.3377075195312	2	544.308938	1086.60332	-0.62871	-0.00034221	3.2505	0.0017693	2.6218	0.0014271	544.3100704544181	64.44	0.73587	64.44	63.974	64.71	0					21	17	2	0	0	0	0.027403	1	5839	5839		90.37	29.398	1	496320	+		18692	16861	15242	15264	20739	20739					0.06348513017701407
IKEDKTEY	8	Unmodified	_IKEDKTEY_					0	0	0		tr|A0A7D6VQD8|A0A7D6VQD8_9CLOTAminotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14910PE=3SV=1	tr|A0A7D6VQD8|A0A7D6VQD8_9CLOTAminotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14910PE=3SV=1	tr|A0A7D6VQD8|A0A7D6VQD8_9CLOTAminotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14910PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	513.2598876953125	2	513.261122	1024.50769	-1.0718	-0.00055011	-1.8237	-0.00093604	-2.8955	-0.0014861	513.260072304655	27.617	0.40096	27.617	27.44	27.841	0					17	7	3	0	0	0	0.72896	1	830	830		37.159	5.2042	1	189720			18693	34845	15243	15265	20740	20740					-0.0035825989318709617
IKEDRPFFT	9	Unmodified	_IKEDRPFFT_					0	0	0			REV__ENSG00000136816|ENST00000259339|TOR1B	REV__ENSG00000136816|ENST00000259339|TOR1B	MULTI-SECPEP	OvCa9_classI_Rep2	2	575.8198852539062	2	576.806031	1151.59751	-1.8329	-0.0010572	-0.84423	-0.00048696	-2.6771	-0.0015442	576.8055312624125	101.34	0.44519	100.58	100.37	100.81	-0.76401					14	8	2	0	0	0	0.027462	1	9277	9277		19.104	5.6495	1	35039	+		18694	19405	15244	15266	20741	20741					0.027774145060448063
IKEEFVKKP	9	Unmodified	_IKEEFVKKP_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa9_classI_Rep3	3	559.3341064453125	2	559.334424	1116.6543	0.059927	3.3519E-05	-1.326	-0.00074165	-1.266	-0.00070813	559.3337743770333	105.67	2.6036	104.33	103.89	106.49	-1.3482					139	50	4	0	0	0	0.42676	1	7486	7486		49.442	7.1035	1	6929000	+		18695	28942;32737	15245	15267	20742	20742					0.10063462062566941
IKEEFVKKP	9	Unmodified	_IKEEFVKKP_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.334228515625	2	559.334424	1116.6543	0.1153	6.449E-05	-1.1886	-0.00066482	-1.0733	-0.00060033	559.3338934185311	106.4	2.878	104.38	103.6	106.47	-2.0161					138	56	4	0	0	0	0.51865	1	9767	9767		40.778	2.0246	1	9929600	+		18696	28942;32737	15245	15267	20743	20743					0.10063462062566941
IKEEKLPKN	9	Unmodified	_IKEEKLPKN_					0	0	0			REV__ENSG00000171843|ENST00000380338|MLLT3	REV__ENSG00000171843|ENST00000380338|MLLT3	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7514038085938	2	549.829506	1097.64446	-0.30087	-0.00016543	2.4111	0.0013257	2.1103	0.0011603	549.8307399890936	101.69	0.42587	101.69	101.48	101.91	0					22	9	3	0	0	0	0.027453	1	11310	11310		37.812	9.9293	1	444230	+		18697	21651	15246	15268	20744	20744					0.0995427405719056
IKEFILSQYNI	11	Unmodified	_IKEFILSQYNI_					0	0	0		tr|A0A7D6VT99|A0A7D6VT99_9CLOTCotSfamilysporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16390PE=4SV=1	tr|A0A7D6VT99|A0A7D6VT99_9CLOTCotSfamilysporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16390PE=4SV=1	tr|A0A7D6VT99|A0A7D6VT99_9CLOTCotSfamilysporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16390PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.7803955078125	3	456.590494	1366.74965	-0.57554	-0.00026279	-1.0028	-0.00045786	-1.5783	-0.00072065	456.5900035765854	80.945	0.29472	78.234	78.003	78.298	-2.7106					6	5	2	0	0	0	0.026174	1	6627	6627		8.4073	0	1	9274.3			18698	35100	15247	15269	20745	20745					0.08094770462957968
IKEFKSKLN	9	Unmodified	_IKEFKSKLN_					0	0	0			REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8302001953125	2	553.832049	1105.64954	-0.12008	-6.6502E-05	-3.596	-0.0019916	-3.7161	-0.0020581	553.8299276335473	138.55	4.0786	138.32	136.16	140.24	-0.22696					182	83	3	0	0	0	0.68424	1	13740	13740		21.96	2.5999	1	64451	+		18699	20754	15248	15270	20746	20746					0.10094577919812764
IKEFKSKLN	9	Unmodified	_IKEFKSKLN_					0	0	0			REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	MULTI-MSMS	OvCa9_classI_Rep3	3	553.829345703125	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.69913	1	11994	11994		18.262	1.7889	1	308210	+		18700	20754	15248	15270	20747	20747					0.10094577919812764
IKEKIFNL	8	Unmodified	_IKEKIFNL_					0	0	0		tr|A0A7D6VMW6|A0A7D6VMW6_9CLOTD-aminoacyl-tRNAdeacylaseOS=ClostridiumintestinaleOX=36845GN=dtdPE=3SV=1	tr|A0A7D6VMW6|A0A7D6VMW6_9CLOTD-aminoacyl-tRNAdeacylaseOS=ClostridiumintestinaleOX=36845GN=dtdPE=3SV=1	tr|A0A7D6VMW6|A0A7D6VMW6_9CLOTD-aminoacyl-tRNAdeacylaseOS=ClostridiumintestinaleOX=36845GN=dtdPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	502.8117370605469	2	502.810585	1003.60662	1.4794	0.00074384	0.21606	0.00010864	1.6954	0.00085248	502.8106123813071	113.83	1.7268	113.83	113.57	115.3	0					94	37	5	0	0	0	0.35821	1	13010	13010		96.19	5.4138	1	9923900			18701	34672	15249	15271	20748	20748					0.10495807862366746
IKEKLIFPY	9	Unmodified	_IKEKLIFPY_					0	0	0		ENSG00000138413|ENST00000345146|IDH1;ENST00000462386.5_1_2:209112975-209118617:-|nuORF;ENST00000481557.1_1_2:209116152-209118617:-|nuORF	ENSG00000138413|ENST00000345146|IDH1	ENSG00000138413|ENST00000345146|IDH1	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8427734375	2	575.847167	1149.67978	-4.018	-0.0023138	-2.943	-0.0016947	-6.9609	-0.0040084	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.58665	1	12265	12265		33.516	4.366	1	445630			18702	4687	15250	15272	20749	20749					0.11092936584987001
IKELEKKIL	9	Unmodified	_IKELEKKIL_					0	0	0		tr|A0A7D6ZSE6|A0A7D6ZSE6_9CLOTMethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metHPE=3SV=1	tr|A0A7D6ZSE6|A0A7D6ZSE6_9CLOTMethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metHPE=3SV=1	tr|A0A7D6ZSE6|A0A7D6ZSE6_9CLOTMethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metHPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	558.3096923828125	2	557.365724	1112.7169	0.43861	0.00024446	-0.3137	-0.00017485	0.12491	6.9619E-05	557.3653907635055	86.977	2.1501	84.35	83.86	86.01	-2.6269					96	42	3	0	0	0	0.027462	1	7466	7466		16.473	0	1	112520			18703	35736	15251	15273	20750	20750					0.16504608130753695
IKELIMRKI	9	Unmodified	_IKELIMRKI_					0	0	0			REV__tr|A0A7D6ZMY2|A0A7D6ZMY2_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13915PE=4SV=1	REV__tr|A0A7D6ZMY2|A0A7D6ZMY2_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13915PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	572.3680419921875	2	572.367744	1142.72094	1.8484	0.001058	-2.9247	-0.001674	-1.0763	-0.00061603	572.3660581805273	92.898	1.0446	92.898	92.26	93.305	0					56	24	3	0	0	0	0.3249	1	10076	10076		60.118	1.3363	1	1529600	+		18704	32113	15252	15274	20751	20751					0.15528374352811625
IKELIMRKI	9	Unmodified	_IKELIMRKI_					0	0	0			REV__tr|A0A7D6ZMY2|A0A7D6ZMY2_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13915PE=4SV=1	REV__tr|A0A7D6ZMY2|A0A7D6ZMY2_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13915PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.8189697265625	2	572.367744	1142.72094	1.8484	0.001058	-2.9247	-0.001674	-1.0763	-0.00061603	572.3660581805273	92.898	1.0446	92.898	92.26	93.305	0					56	24	3	0	0	0	0.027411	1	10070	10070		45.972	0	1	1529600	+		18705	32113	15252	15274	20752	20752					0.15528374352811625
IKELRAVLEP	10	Unmodified	_IKELRAVLEP_					0	0	0			REV__ENST00000581386.5_1_17:26684693-26686548:+|nuORF	REV__ENST00000581386.5_1_17:26684693-26686548:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.8126220703125	2	584.358431	1166.70231	1.8267	0.0010675	3.3317	0.0019469	5.1584	0.0030144	584.3604249383061	93.82	0.88493	93.82	93.549	94.433	0					46	20	3	0	0	0	0.026659	1	10216	10216		54.776	0	1	1769200	+		18706	23473	15253	15275	20753	20753					0.1256253598260173
IKEMLEIQG	9	Unmodified	_IKEMLEIQG_					0	0	0			REV__ENSG00000104321|ENST00000262209|TRPA1	REV__ENSG00000104321|ENST00000262209|TRPA1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.7844848632812	2	530.788992	1059.56343	-1.6343	-0.00086747	3.3452	0.0017756	1.7109	0.00090814	531.2940363961659	70.416	0.19614	66.935	66.787	66.983	-3.4812					5	3	2	0	0	0	0.027462	1	5309	5309		39.253	0	1	20301	+		18707	17657	15254	15276	20754	20754					0.03603250022752036
IKENQQQIV	9	Unmodified	_IKENQQQIV_					0	0	0			REV__PIGS-SPAG5|1|fusion;REV__ENST00000580676.1_1_17:26905530-26906263:-|nuORF	REV__PIGS-SPAG5|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.7915649414062	2	550.308938	1098.60332	1.1685	0.00064303	2.9638	0.001631	4.1322	0.002274	550.3111003628774	111.33	0.58115	111.33	111.02	111.6	0					28	12	3	0	0	0	0.027353	1	12644	12644		62.107	7.3311	1	181090	+		18708	16992;27823	15255	15277	20755	20755					0.05796513017685356
IKENQQQIV	9	Unmodified	_IKENQQQIV_					0	0	0			REV__PIGS-SPAG5|1|fusion;REV__ENST00000580676.1_1_17:26905530-26906263:-|nuORF	REV__PIGS-SPAG5|1|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	550.308938	1098.60332	0.73824	0.00040626	3.5721	0.0019658	4.3103	0.002372	550.3104591255237	111.28	0.34475	111.14	110.93	111.27	-0.13961	0.016171	0.00031914	NaN	62.107	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16943	+		18709	16992;27823	15255	15277							0.05796513017685356
IKENQQQIV	9	Unmodified	_IKENQQQIV_					0	0	0			REV__PIGS-SPAG5|1|fusion;REV__ENST00000580676.1_1_17:26905530-26906263:-|nuORF	REV__PIGS-SPAG5|1|fusion	MULTI-MATCH	OvCa9_classI_Rep3	3		2	550.308938	1098.60332	1.4113	0.00077663	1.0689	0.00058825	2.4802	0.0013649	550.3087649254796	112.1	0.29509	110.99	110.89	111.19	-1.1038	-0.12856	-0.0024359	NaN	62.107	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27258	+		18710	16992;27823	15255	15277							0.05796513017685356
IKENQQQIV	9	Unmodified	_IKENQQQIV_					0	0	0			REV__PIGS-SPAG5|1|fusion;REV__ENST00000580676.1_1_17:26905530-26906263:-|nuORF	REV__PIGS-SPAG5|1|fusion	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	550.308938	1098.60332	0.084557	4.6532E-05	5.1176	0.0028163	5.2022	0.0028628	550.3111816007533	112.53	0.29974	111.02	110.9	111.2	-1.5111	-0.098218	0.0020201	NaN	62.107	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16957	+		18711	16992;27823	15255	15277							0.05796513017685356
IKERTEAL	8	Unmodified	_IKERTEAL_					0	0	0			REV__nc|ENSG00000111879|Q8NB25-3|FAM184A	REV__nc|ENSG00000111879|Q8NB25-3|FAM184A	MULTI-MSMS	OvCa99_classI_Rep5	1	480.2796630859375	2	480.279649	958.544745	-0.45594	-0.00021898	0.018573	8.9202E-06	-0.43736	-0.00021006	480.2795510151114	42.431	0.98605	42.431	42.199	43.185	0					47	22	4	0	0	0	0.25402	1	2726	2726		115.46	9.0438	1	2695400	+		18712	18067	15256	15278	20756	20756					0.06381456443239131
IKERTEAL	8	Unmodified	_IKERTEAL_					0	0	0			REV__nc|ENSG00000111879|Q8NB25-3|FAM184A	REV__nc|ENSG00000111879|Q8NB25-3|FAM184A	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	480.279649	958.544745	-0.93737	-0.0004502	-6.0163	-0.0028895	-6.9537	-0.0033397	480.2769614920206	45.79	0.73117	42.751	42.281	43.013	-3.0385	0.16017	-0.0052159	NaN	115.46	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40359	+		18713	18067	15256	15278							0.06381456443239131
IKESIDEDM	9	Unmodified	_IKESIDEDM_					0	0	0			REV__nc|ENSG00000120526|Q96RS6-3|NUDCD1	REV__nc|ENSG00000120526|Q96RS6-3|NUDCD1	MULTI-MSMS	OvCa99_classI_Rep5	1	540.25146484375	2	540.249897	1078.48524	-0.45739	-0.0002471	0.32337	0.0001747	-0.13402	-7.2402E-05	540.2498746259802	55.206	0.66439	55.206	54.935	55.599	0					33	15	4	0	0	0	0.19758	1	4500	4500		76.774	5.4784	1	1805600	+		18714	18503	15257	15279	20757	20757					-0.0508622735312656
IKETDGNSHL	10	Unmodified	_IKETDGNSHL_					0	0	0			REV__tr|A0A7D7A2V0|A0A7D7A2V0_9CLOTFlippaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18955PE=4SV=1	REV__tr|A0A7D7A2V0|A0A7D7A2V0_9CLOTFlippaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18955PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.277099609375	2	557.280377	1112.5462	-1.5119	-0.00084257	-2.9098	-0.0016216	-4.4217	-0.0024641	557.2775555479442	125.75	1.3237	124.33	124.04	125.36	-1.4143					70	26	4	0	0	0	0.58067	1	11983	11983		44.377	1.981	1	98782	+		18715	32553	15258	15280	20758	20758					-0.005569542586727039
IKETKAVEV	9	Unmodified	_IKETKAVEV_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.2813415527344	2	508.802957	1015.59136	0.63244	0.00032179	-4.2269	-0.0021507	-3.5945	-0.0018289	508.80249870606053	74.373	0.15548	74.373	74.286	74.441	0					5	3	2	0	0	0	0.027462	1	7356	7356		26.693	16.428	1	200730	+		18716	18424	15259	15281	20759	20759					0.08418896274520193
IKETVRKVT	9	Unmodified	_IKETVRKVT_					0	0	0		ENSG00000154227|ENST00000679737|CERS3	ENSG00000154227|ENST00000679737|CERS3	ENSG00000154227|ENST00000679737|CERS3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.298583984375	2	537.337498	1072.66044	-0.68626	-0.00036876	-2.7334	-0.0014688	-3.4197	-0.0018375	537.8382373373992	61.654	0.2328	58.197	58.103	58.336	-3.4577					6	4	2	0	0	0	0.027462	1	4233	4233		26.693	3.6504	1	21858			18717	5719	15260	15282	20760	20760					0.12701980294104942
IKEVHQTHIK	10	Unmodified	_IKEVHQTHIK_					0	0	0		nc|ENSG00000270379|A2RTY3-2|HEATR9;nc|ENSG00000270379|A2RTY3-4|HEATR9;ENSG00000270379|ENST00000604834|HEATR9	nc|ENSG00000270379|A2RTY3-2|HEATR9	nc|ENSG00000270379|A2RTY3-2|HEATR9	MULTI-MSMS	OvCa9_classI_Rep2	2	411.5782165527344	3	411.575178	1231.70371	4.5945	0.001891	3.4062	0.0014019	8.0007	0.0032929	411.57657624517054	25.113	0.89927	22.404	22.261	23.161	-2.7097					40	19	3	0	0	0	0.6898	1	247	247		31.634	4.587	1	146440			18718	9545	15261	15283	20761	20761					0.0971217007136147
IKEYVKRSN	9	Unmodified	_IKEYVKRSN_					0	0	0		tr|A0A553SQ36|A0A553SQ36_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_19710PE=4SV=1	tr|A0A553SQ36|A0A553SQ36_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_19710PE=4SV=1	tr|A0A553SQ36|A0A553SQ36_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_19710PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.7998046875	2	568.824755	1135.63496	2.1579	0.0012275	0.62533	0.0003557	2.7832	0.0015832	568.8244862115293	76.538	0.43719	76.538	76.28	76.718	0					22	10	3	0	0	0	0.027462	1	7669	7669		40.778	23.413	1	404090			18719	34114	15262	15284	20762	20762					0.07256505771670163
IKEYVRRHETQ	11	Unmodified	_IKEYVRRHETQ_					0	0	0			REV__chr13:42888502-42900310|163|15.56|0.81|4.26|-|1|EPSTI1,EPSTI1|1	REV__chr13:42888502-42900310|163|15.56|0.81|4.26|-|1|EPSTI1,EPSTI1|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.8132629394531	3	486.931913	1457.77391	-0.47029	-0.000229	0.34086	0.00016597	-0.12944	-6.3027E-05	486.9318309436438	57.385	1.0442	54.593	54.178	55.223	-2.792					39	20	3	0	0	0	0.025508	1	4065	4065		34.087	15.555	1	43097	+		18720	15898	15263	15285	20763	20763					0.0633342366920715
IKFFRHLAKF	10	Unmodified	_IKFFRHLAKF_					0	0	0			REV__tr|A0A553SQD7|A0A553SQD7_NIACItRNA-dihydrouridinesynthaseOS=NialliacirculansOX=1397GN=CEQ21_24895PE=3SV=1	REV__tr|A0A553SQD7|A0A553SQD7_NIACItRNA-dihydrouridinesynthaseOS=NialliacirculansOX=1397GN=CEQ21_24895PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	436.7640380859375	3	436.264276	1305.771	1.0393	0.00045342	3.3668	0.0014688	4.4061	0.0019222	436.26553415967567	71.473	0.89091	68.966	68.699	69.59	-2.5071					33	16	3	0	0	0	0.027298	1	5815	5815		16.717	0	1	69466	+		18721	30626	15264	15286	20764	20764					0.1303424507298132
IKFIMSLKSF	10	Unmodified	_IKFIMSLKSF_					0	0	0		AFF1|p.K1086Sfs*71|1|0.1|ENSG00000172493|chr4:87132374-87132375|AA/-|frameshift_variant;nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1	AFF1|p.K1086Sfs*71|1|0.1|ENSG00000172493|chr4:87132374-87132375|AA/-|frameshift_variant	AFF1|p.K1086Sfs*71|1|0.1|ENSG00000172493|chr4:87132374-87132375|AA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	607.353759765625	2	607.354302	1212.69405	-0.61354	-0.00037263	0.24982	0.00015173	-0.36371	-0.0002209	607.3543577015784	45.588	1.5455	42.878	42.497	44.043	-2.7097					76	30	4	0	0	0	0.61787	1	2675	2675		21.686	7.5486	1	376690			18722	46	15265	15287	20765	20765					0.09621265741611751
IKFNMHFW	8	Unmodified	_IKFNMHFW_					0	0	0			REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|237|1|anti-sense	REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|237|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.2996826171875	2	561.781305	1121.54806	1.6379	0.00092015	2.2759	0.0012786	3.9138	0.0021987	561.7817829817586	150.72	0.74857	150.72	150.14	150.89	0					25	14	2	0	0	0	0.028476	1	17596	17596		21.702	0	1	44135	+		18723	28497	15266	15288	20766	20766					-0.007855719837380093
IKFQYRGR	8	Unmodified	_IKFQYRGR_					0	0	0		nc|ENSG00000128604|Q13568-5|IRF5;nc|ENSG00000128604|Q13568-4|IRF5;nc|ENSG00000128604|Q13568|IRF5;nc|ENSG00000128604|Q13568-3|IRF5;ENSG00000128604|ENST00000357234|IRF5	nc|ENSG00000128604|Q13568-5|IRF5	nc|ENSG00000128604|Q13568-5|IRF5	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.2957763671875	2	534.309075	1066.6036	-0.73028	-0.0003902	4.4003	0.0023511	3.6701	0.0019609	534.3125376713614	70.591	0.1478	68.02	67.916	68.063	-2.5707					4	2	2	0	0	0	0.028476	1	5652	5652		18.324	0	1	5623.9			18724	3894	15267	15289	20767	20767					0.07295977528224284
IKFYSIQQDL	10	Unmodified	_IKFYSIQQDL_					0	0	0		nc|ENSG00000114650|Q12770-3|SCAP;ENSG00000114650|ENST00000265565|SCAP;nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	MULTI-SECPEP	OvCa99_classI_Rep5	1	418.5634460449219	3	418.895806	1253.66559	-0.42667	-0.00017873	4.3995	0.0018429	3.9728	0.0016642	419.23187128201465	37.254	1.2299	37.254	36.931	38.161	0					55	26	4	0	0	0	0.02689	1	2040	2040		39.873	13.123	1	556940			18725	3031	15268	15290	20768	20768					0.048902393660455346
IKGAPLVKNQ	10	Unmodified	_IKGAPLVKNQ_					0	0	0		ENSG00000165164|ENST00000378653|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.2957763671875	2	534.332216	1066.64988	-0.64873	-0.00034664	-0.34466	-0.00018417	-0.99339	-0.0005308	534.3318956739706	70.625	0.92351	68.054	67.765	68.688	-2.5707					37	17	3	0	0	0	0.026956	1	5652	5652		34.173	7.4796	1	96287			18726	6529	15269	15291	20769	20769					0.11921997639637993
IKGDLIELL	9	Unmodified	_IKGDLIELL_					0	0	0			REV__nc|ENSG00000152413|Q86YM7-2|HOMER1	REV__nc|ENSG00000152413|Q86YM7-2|HOMER1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.3155517578125	2	507.3157	1012.61685	-1.2891	-0.00065398	1.1986	0.00060809	-0.090461	-4.5892E-05	507.3161252150664	116.87	1.585	116.74	116.42	118	-0.12869					86	31	4	0	0	0	0.3249	1	11182	11182		60.118	7.1816	1	305710	+		18727	20283	15270	15292	20770	20770					0.11104370796954299
IKGDLIELL	9	Unmodified	_IKGDLIELL_					0	0	0			REV__nc|ENSG00000152413|Q86YM7-2|HOMER1	REV__nc|ENSG00000152413|Q86YM7-2|HOMER1	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.31451416015625	2	507.3157	1012.61685	-1.2635	-0.00064101	0.79123	0.00040141	-0.4723	-0.0002396	507.31593965363254	118.1	1.9854	116.76	116.42	118.4	-1.3444					95	37	4	0	0	0	0.3249	1	11043	11043		60.118	3.6845	1	576430	+		18728	20283	15270	15292	20771	20771					0.11104370796954299
IKGEKGLPGLA	11	Unmodified	_IKGEKGLPGLA_					0	0	0		ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	ENSG00000173369|ENST00000509305|C1QB	ENSG00000173369|ENST00000509305|C1QB	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.7991333007812	2	541.832049	1081.64954	2.5721	0.0013937	-1.1315	-0.00061307	1.4406	0.00078059	541.8318250363029	106.25	0.39329	106.25	106.01	106.41	0					13	8	2	0	0	0	0.025638	1	11945	11945		7.8045	0	1	156960			18729	7370	15271	15293	20772	20772					0.1119857791979939
IKGFITDGGP	10	Unmodified	_IKGFITDGGP_					0	0	0			REV__ENSG00000169567|ENST00000304043|HINT1	REV__ENSG00000169567|ENST00000304043|HINT1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.8031921386719	2	502.7742	1003.53385	-0.68496	-0.00034438	0.28678	0.00014419	-0.39818	-0.00020019	502.7741533986702	58.601	0.75165	55.209	54.852	55.604	-3.392					23	14	2	0	0	0	0.026849	1	3903	3903		32.812	7.2384	1	170130	+		18730	21469	15272	15294	20773	20773					0.032220540689422705
IKGGAAKLQI	10	Unmodified	_IKGGAAKLQI_					0	0	0		ENST00000461851.1_1_7:33061643-33066527:-|nuORF;ENST00000464840.5_1_7:33063600-33075596:-|nuORF;ENST00000441170.1_1_4:118496697-118497264:-|nuORF;nc|ENSG00000122643|Q9H0P0-3|NT5C3A;nc|ENSG00000122643|Q9H0P0-2|NT5C3A;nc|ENSG00000122643|Q9H0P0-1|NT5C3A;ENSG00000122643|ENST00000610140|NT5C3A;nc|ENSG00000122643|Q9H0P0|NT5C3A	ENST00000461851.1_1_7:33061643-33066527:-|nuORF	ENST00000461851.1_1_7:33061643-33066527:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	499.8228454589844	2	499.821484	997.628415	1.8987	0.00094903	0.1792	8.9566E-05	2.0779	0.0010386	499.82141780075625	92.659	0.54052	92.659	92.428	92.968	0					34	12	4	0	0	0	0.18827	1	10019	10019		96.19	2.184	1	1981600			18731	3545	15273	15295	20774	20774					0.1295061261095043
IKGGKKVYKS	10	Unmodified	_IKGGKKVYKS_					0	0	0		APC|p.S2449Yfs*25|1|0.1|ENSG00000134982|chr5:112842938-112842939|-/TACTTCAGAAACAATCCACTTTTCCCCAGTC|frameshift_variant;nc|ENSG00000134982|P25054-2|APC;nc|ENSG00000134982|P25054-3|APC;ENSG00000134982|ENST00000257430|APC	APC|p.S2449Yfs*25|1|0.1|ENSG00000134982|chr5:112842938-112842939|-/TACTTCAGAAACAATCCACTTTTCCCCAGTC|frameshift_variant	APC|p.S2449Yfs*25|1|0.1|ENSG00000134982|chr5:112842938-112842939|-/TACTTCAGAAACAATCCACTTTTCCCCAGTC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.3238525390625	2	554.347866	1106.68118	-0.74913	-0.00041528	-0.051158	-2.8359E-05	-0.80028	-0.00044364	554.3478808801913	50.969	0.20169	47.796	47.62	47.821	-3.1734					6	3	2	0	0	0	0.026931	1	2947	2947		30.318	0	1	15034			18732	101	15274	15296	20775	20775					0.13210570673732036
IKGHLPGF	8	Unmodified	_IKGHLPGF_					0	0	0			REV__tr|A0A553SJ01|A0A553SJ01_NIACIAlanine--glyoxylateaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15840PE=3SV=1	REV__tr|A0A553SJ01|A0A553SJ01_NIACIAlanine--glyoxylateaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15840PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	434.7719421386719	2	434.755613	867.496673	1.276	0.00055475	-4.2777	-0.0018597	-3.0017	-0.001305	434.75237598935087	41.96	0.29552	39.25	39.029	39.324	-2.7097					8	5	2	0	0	0	0.028476	1	2224	2224		29.842	10.482	1	11821	+		18733	29951	15275	15297	20776	20776					0.05762427313857188
IKGIGYEIDPL	11	Unmodified	_IKGIGYEIDPL_					0	0	0		tr|A0A7D6VZM6|A0A7D6VZM6_9CLOTSulfiteexporterTauE/SafEfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20830PE=4SV=1	tr|A0A7D6VZM6|A0A7D6VZM6_9CLOTSulfiteexporterTauE/SafEfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20830PE=4SV=1	tr|A0A7D6VZM6|A0A7D6VZM6_9CLOTSulfiteexporterTauE/SafEfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20830PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	609.3412475585938	2	609.342446	1216.67034	-0.36303	-0.00022121	-1.873	-0.0011413	-2.2361	-0.0013625	609.3412722449411	39.444	0.55608	39.444	39.242	39.798	0					29	12	4	0	0	0	0.65947	1	2322	2322		39.253	6.4404	1	963190			18734	35363	15276	15298	20777	20777					0.07067123508795703
IKGLFTGVPN	10	Unmodified	_IKGLFTGVPN_					0	0	0		nc|ENSG00000123342|Q99542-3|MMP19;ENST00000547685.5_1_12:56230822-56232389:-|nuORF;ENSG00000123342|ENST00000322569|MMP19;ENST00000548882.5_1_12:56230822-56231236:-|nuORF	nc|ENSG00000123342|Q99542-3|MMP19	nc|ENSG00000123342|Q99542-3|MMP19	MSMS	OvCa9_classI_Rep2	2	523.3046875	2	523.305667	1044.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.91	1	45.2	44.7	45.7	-2.7097								0	0	0	0.15649	1	2947	2947		45.972	6.7194	1				18735	3589	15277	15299	20778	20778					0.0762661985700106
IKGLYGID	8	Unmodified	_IKGLYGID_					0	0	0		ENSG00000171989|ENST00000307144|LDHAL6B	ENSG00000171989|ENST00000307144|LDHAL6B	ENSG00000171989|ENST00000307144|LDHAL6B	MULTI-SECPEP	OvCa99_classI_Rep5	1	438.78253173828125	2	439.752736	877.490919	3.4319	0.0015092	-0.78608	-0.00034568	2.6458	0.0011635	439.75226737412453	82.675	0.42791	82.675	82.437	82.865	0					16	9	2	0	0	0	0.028476	1	8580	8580		38.806	0	1	442050			18736	7257	15278	15300	20779	20779					0.04727284011528354
IKGNLAENK	9	Unmodified	_IKGNLAENK_					0	0	0		nc|ENSG00000144445|A0AUZ9-3|KANSL1L;nc|ENSG00000144445|A0AUZ9-2|KANSL1L;ENSG00000144445|ENST00000281772|KANSL1L	nc|ENSG00000144445|A0AUZ9-3|KANSL1L	nc|ENSG00000144445|A0AUZ9-3|KANSL1L	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.27520751953125	2	493.785099	985.555644	-0.94864	-0.00046842	-0.47368	-0.0002339	-1.4223	-0.00070232	493.78460115905136	76.325	0.51829	73.954	73.62	74.138	-2.3715					16	9	2	0	0	0	0.027453	1	3932	3932		37.812	3.639	1	18168			18737	5151	15279	15301	20780	20780					0.062288588175078985
IKGRHDWTV	9	Unmodified	_IKGRHDWTV_					0	0	0			REV__chr11:62192392-62193399|198|28.13|0.0|13.72|+|0|None,SCGB1D1|1	REV__chr11:62192392-62193399|198|28.13|0.0|13.72|+|0|None,SCGB1D1|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	556.794921875	2	556.30399	1110.59343	0.96115	0.00053469	3.6302	0.0020195	4.5913	0.0025542	556.3058755399405	115.03	0.76428	113.63	113.3	114.07	-1.3977					25	14	2	0	0	0	0.027462	1	10720	10720		27.882	0	1	114430	+		18738	15861	15280	15302	20781	20781					0.04255369802990572
IKGSRTYK	8	Unmodified	_IKGSRTYK_					0	0	0			REV__tr|A0A7D6ZET8|A0A7D6ZET8_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12265PE=4SV=1	REV__tr|A0A7D6ZET8|A0A7D6ZET8_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12265PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	476.78216552734375	2	476.782359	951.550165	0.47987	0.00022879	-0.57998	-0.00027652	-0.10011	-4.7731E-05	476.7819652613016	43.145	1.2386	40.436	40.114	41.353	-2.7097					56	24	4	0	0	0	0.66057	1	2374	2374		51.335	5.3835	1	295300	+		18739	31950	15281	15303	20782	20782					0.07245180025711306
IKGTGKKMLY	10	Unmodified	_IKGTGKKMLY_					0	0	0			REV__tr|A0A7D6ZMM2|A0A7D6ZMM2_9CLOTASCHdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12500PE=4SV=1	REV__tr|A0A7D6ZMM2|A0A7D6ZMM2_9CLOTASCHdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12500PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	569.8351440429688	2	569.836277	1137.658	-0.6563	-0.00037398	-3.087	-0.0017591	-3.7433	-0.0021331	569.8345222869018	99.284	4.3485	97.599	97.322	101.67	-1.685					272	84	6	0	0	0	0.20801	1	6779	6779		93.195	0.052222	1	12084000	+		18740	32108	15282	15304	20783	20783					0.09467808564795632
IKGTTYIDT	9	Unmodified	_IKGTTYIDT_					0	0	0		tr|A0A7D6VT78|A0A7D6VT78_9CLOT4Fe-4SbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01775PE=4SV=1	tr|A0A7D6VT78|A0A7D6VT78_9CLOT4Fe-4SbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01775PE=4SV=1	tr|A0A7D6VT78|A0A7D6VT78_9CLOT4Fe-4SbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01775PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	506.27349853515625	2	506.27149	1010.52843	1.7132	0.00086734	2.8503	0.001443	4.5635	0.0023104	506.2727467608177	54.771	2.6321	51.6	50.779	53.411	-3.1715					173	88	3	0	0	0	0.56889	1	1475	1475		35.618	0.41757	1	154000			18741	35094	15283	15305	20784	20784					0.02358330486470095
IKGYPQCLKI	10	Unmodified	_IKGYPQCLKI_					0	0	0			REV__nc|ENSG00000144642|Q6XE24-3|RBMS3	REV__nc|ENSG00000144642|Q6XE24-3|RBMS3	MULTI-MSMS	OvCa9_classI_Rep4_	4	581.83642578125	2	581.836277	1161.658	-0.7762	-0.00045162	2.5137	0.0014626	1.7375	0.001011	581.8377598965042	22.313	0.98088	20.974	20.776	21.757	-1.3386					45	24	3	0	0	0	0.78463	1	304	304		20.947	0.95016	1	34500	+		18742	19923	15284	15306	20785	20785					0.08363808564763531
IKHESNFARI	10	Unmodified	_IKHESNFARI_					0	0	0			REV__nc|ENSG00000166436|O15016-2|TRIM66	REV__nc|ENSG00000166436|O15016-2|TRIM66	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.69610595703125	3	405.559528	1213.65676	0.4846	0.00019654	-3.1599	-0.0012815	-2.6753	-0.001085	405.55820728838376	37.416	0.50853	37.416	37.159	37.668	0					19	10	3	0	0	0	0.027062	1	2028	2028		14.694	6.4586	1	107660	+		18743	21193	15285	15307	20786	20786					0.05847310520221072
IKHLDVVTLLR	11	Unmodified	_IKHLDVVTLLR_					0	0	0		ENSG00000081248|ENST00000362061|CACNA1S;ERC1-CACNA1C|23|fusion;ERC1-CACNA1C|37|fusion;ERC1-CACNA1C|9|fusion;ERC1-CACNA1C|18|fusion;ERC1-CACNA1C|11|fusion;ERC1-CACNA1C|17|fusion;ERC1-CACNA1C|14|fusion;ERC1-CACNA1C|35|fusion;ERC1-CACNA1C|33|fusion;ERC1-CACNA1C|39|fusion;ERC1-CACNA1C|25|fusion;ERC1-CACNA1C|5|fusion;ERC1-CACNA1C|43|fusion;ERC1-CACNA1C|38|fusion;ERC1-CACNA1C|44|fusion;ERC1-CACNA1C|45|fusion;ERC1-CACNA1C|31|fusion;ERC1-CACNA1C|32|fusion;ERC1-CACNA1C|40|fusion;ERC1-CACNA1C|30|fusion;ERC1-CACNA1C|34|fusion;ERC1-CACNA1C|36|fusion;ERC1-CACNA1C|41|fusion;ERC1-CACNA1C|8|fusion;ERC1-CACNA1C|22|fusion;ERC1-CACNA1C|19|fusion;ERC1-CACNA1C|46|fusion;ERC1-CACNA1C|6|fusion;ERC1-CACNA1C|3|fusion;ERC1-CACNA1C|1|fusion;ERC1-CACNA1C|4|fusion;ERC1-CACNA1C|42|fusion;ERC1-CACNA1C|13|fusion;ERC1-CACNA1C|29|fusion;ERC1-CACNA1C|12|fusion;ERC1-CACNA1C|2|fusion;ERC1-CACNA1C|10|fusion;ERC1-CACNA1C|16|fusion;ERC1-CACNA1C|20|fusion;ERC1-CACNA1C|26|fusion;ERC1-CACNA1C|21|fusion;ERC1-CACNA1C|15|fusion;ERC1-CACNA1C|24|fusion;ERC1-CACNA1C|27|fusion;ERC1-CACNA1C|7|fusion;ERC1-CACNA1C|28|fusion;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;CACNA1C|p.V1586Wfs*9|1|0.1|ENSG00000151067|chr12:2666770-2666770|C/-|frameshift_variant;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000157388|Q01668-2|CACNA1D;nc|ENSG00000157388|Q01668-4|CACNA1D;CACNA1D|p.Q1955Pfs*19|1|0.09|ENSG00000157388|chr3:53808762-53808763|-/CTCCTCCTTCAGAGAGTGTTGTGCAG|frameshift_variant;nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D	ENSG00000081248|ENST00000362061|CACNA1S;ERC1-CACNA1C|23|fusion;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000157388|Q01668-2|CACNA1D	ERC1-CACNA1C|23|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.26263427734375	3	436.278362	1305.81326	0.41757	0.00018218	1.9004	0.00082909	2.3179	0.0010113	436.2798580332661	65.095	0.53101	61.609	61.26	61.791	-3.4854					22	10	3	0	0	0	0.025863	1	4657	4657		25.068	1.6899	1	70055			18744	14314;15092;1658;15117	15286	15308	20787	20787					0.17258175690699318
IKHLPGAL	8	Unmodified	_IKHLPGAL_					0	0	0			REV__ENSG00000106524|ENST00000306999|ANKMY2	REV__ENSG00000106524|ENST00000306999|ANKMY2	MULTI-MSMS	OvCa99_classI_Rep5	1	424.7723693847656	2	424.771263	847.527973	2.7963	0.0011878	-0.11342	-4.8176E-05	2.6828	0.0011396	424.7710642228681	75.732	0.71685	75.732	75.482	76.199	0					36	17	3	0	0	0	0.63104	1	7556	7556		57.453	16.244	1	1697200	+		18745	17807	15287	15309	20788	20788					0.09811000347929166
IKHWRVHT	8	Unmodified	_IKHWRVHT_					0	0	0		ENSG00000180884|ENST00000404801|ZNF792;ENST00000523439.1_1_19:58003464-58005455:+|nuORF;nc|ENSG00000105136|Q96HQ0-6|ZNF419;nc|ENSG00000105136|Q96HQ0-2|ZNF419;nc|ENSG00000105136|Q96HQ0-3|ZNF419;nc|ENSG00000105136|Q96HQ0-4|ZNF419;ENSG00000105136|ENST00000221735|ZNF419;nc|ENSG00000105136|Q96HQ0-5|ZNF419	ENSG00000180884|ENST00000404801|ZNF792	ENSG00000180884|ENST00000404801|ZNF792	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.7828369140625	2	538.809242	1075.60393	3.0842	0.0016618	-1.5866	-0.0008549	1.4976	0.0008069	538.8081705225692	97.397	0.47191	97.397	97.05	97.522	0					16	10	2	0	0	0	0.028476	1	10674	10674		40.573	6.4001	1	194160			18746	7895	15288	15310	20789	20789					0.0691539724807626
IKIANLMLNE	10	Oxidation (M)	_IKIANLM(Oxidation (M))LNE_		IKIANLM(1)LNE		IKIANLM(64)LNE	0	0	1			REV__tr|A0A7D6VS91|A0A7D6VS91_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_04885PE=4SV=1	REV__tr|A0A7D6VS91|A0A7D6VS91_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_04885PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	587.8311157226562	2	587.828649	1173.64274	0.23333	0.00013716	2.5509	0.0014995	2.7842	0.0016366	587.8299286124534	46.046	0.74524	46.046	45.8	46.545	0					43	16	4	0	0	0	0.43433	1	3226	3226		63.534	8.7575	1	1749600	+		18747	31479	15289	15311	20790	20790		699			0.0628689697689424
IKIANLMLNE	10	Oxidation (M)	_IKIANLM(Oxidation (M))LNE_					0	0	1			REV__tr|A0A7D6VS91|A0A7D6VS91_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_04885PE=4SV=1	REV__tr|A0A7D6VS91|A0A7D6VS91_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_04885PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	587.828649	1173.64274	0.23333	0.00013716	2.5509	0.0014995	2.7842	0.0016366	587.8299286124534	46.046	0.74524	46.046	45.8	46.545	0	0	0	NaN	63.534	43	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1749600	+		18748	31479	15289	15311				699			0.0628689697689424
IKIDEPFWVTW	11	Unmodified	_IKIDEPFWVTW_					0	0	0			REV__ENSG00000103365|ENST00000309859|GGA2	REV__ENSG00000103365|ENST00000309859|GGA2	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.2822570800781	3	478.586972	1432.73909	0.23114	0.00011062	1.3972	0.00066867	1.6283	0.00077929	478.5875919607399	81.801	1.4017	80.152	79.767	81.169	-1.6485					64	26	3	0	0	0	0.025772	1	6943	6943		21.032	0	1	389540	+		18749	17614	15290	15312	20791	20791					0.04002787808485664
IKIFQGSF	8	Unmodified	_IKIFQGSF_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1;ENST00000515798.5_1_5:34923288-34925101:+|nuORF	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	MULTI-MSMS	OvCa99_classI_Rep5	1	470.2707214355469	2	470.268553	938.522553	2.9728	0.001398	-0.42091	-0.00019794	2.5519	0.0012001	470.26820425991565	89.5	1.9008	89.5	89.235	91.135	0					91	46	4	0	0	0	0.32444	1	9583	9583		102.77	6.5829	1	4873700			18750	2974	15291	15313	20792	20792					0.050832767654810596
IKIKGKGGH	9	Unmodified	_IKIKGKGGH_					0	0	0		tr|A0A553SPT5|A0A553SPT5_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_08335PE=4SV=1;tr|A0A7D6ZZF7|A0A7D6ZZF7_9CLOTAmidohydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06080PE=4SV=1	tr|A0A553SPT5|A0A553SPT5_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_08335PE=4SV=1	tr|A0A553SPT5|A0A553SPT5_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_08335PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	469.750244140625	2	469.300719	936.586885	-0.97645	-0.00045825	1.3885	0.00065163	0.41205	0.00019338	469.30094123516767	67.627	0.98688	64.966	64.644	65.631	-2.661					26	19	2	0	0	0	0.027462	1	5357	5357		18.324	0	1	64546			18751	34082	15292	15314	20793	20793					0.11605476642284884
IKIKGKGGH	9	Unmodified	_IKIKGKGGH_					0	0	0		tr|A0A553SPT5|A0A553SPT5_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_08335PE=4SV=1;tr|A0A7D6ZZF7|A0A7D6ZZF7_9CLOTAmidohydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06080PE=4SV=1	tr|A0A553SPT5|A0A553SPT5_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_08335PE=4SV=1	tr|A0A553SPT5|A0A553SPT5_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_08335PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	469.300719	936.586885	1.1114	0.00052157	-1.0406	-0.00048834	0.070824	3.3238E-05	469.3001097120505	68.001	0.54929	65.114	64.839	65.388	-2.8873	0.033334	-0.00065707	NaN	18.324	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21193			18752	34082	15292	15314							0.11605476642284884
IKILHKSK	8	Unmodified	_IKILHKSK_					0	0	0		tr|A0A7D6ZXV1|A0A7D6ZXV1_9CLOTMurR/RpiRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13975PE=4SV=1	tr|A0A7D6ZXV1|A0A7D6ZXV1_9CLOTMurR/RpiRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13975PE=4SV=1	tr|A0A7D6ZXV1|A0A7D6ZXV1_9CLOTMurR/RpiRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13975PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.7913513183594	2	483.826569	965.638586	-0.81526	-0.00039444	-3.937	-0.0019048	-4.7523	-0.0022993	483.82452455683904	50.094	0.21417	50.094	50.031	50.245	0					5	4	2	0	0	0	0.028476	1	3802	3802		12.207	0	1	98635			18753	35893	15293	15315	20794	20794					0.1543922033616809
IKILNFAVT	9	Unmodified	_IKILNFAVT_					0	0	0			REV__ENST00000548804.5_1_12:58003340-58003568:+|nuORF	REV__ENST00000548804.5_1_12:58003340-58003568:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.303955078125	2	509.81841	1017.62227	2.4177	0.0012326	-0.50402	-0.00025696	1.9137	0.00097564	509.8179226333868	84.71	0.57361	84.71	84.431	85.004	0					28	13	3	0	0	0	0.027462	1	8839	8839		30.504	8.5438	1	1226300	+		18754	27446	15294	15316	20795	20795					0.11416094379421793
IKIMKVPVIK	10	Unmodified	_IKIMKVPVIK_					0	0	0		ECT2|p.E76K|1|0.12|ENSG00000114346|chr3:172755498-172755498|G/A|missense_variant	ECT2|p.E76K|1|0.12|ENSG00000114346|chr3:172755498-172755498|G/A|missense_variant	ECT2|p.E76K|1|0.12|ENSG00000114346|chr3:172755498-172755498|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.332275390625	2	584.896137	1167.77772	-0.54337	-0.00031782	3.3606	0.0019656	2.8172	0.0016478	584.8978805073031	50.998	0.51859	50.998	50.73	51.248	0					15	11	2	0	0	0	0.026891	1	3905	3905		39.253	6.4404	1	179240			18755	778	15295	15317	20796	20796					0.20054421909321718
IKIPVGPET	9	Unmodified	_IKIPVGPET_					0	0	0		ENST00000548647.1_1_12:57037677-57039699:-|nuORF;ENSG00000110955|ENST00000262030|ATP5F1B	ENST00000548647.1_1_12:57037677-57039699:-|nuORF	ENST00000548647.1_1_12:57037677-57039699:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.82073974609375	2	477.286943	952.559333	0.1957	9.3404E-05	-1.1504	-0.00054908	-0.95473	-0.00045568	477.28602249684104	80.761	0.6002	79.065	78.917	79.517	-1.6951					15	11	2	0	0	0	0.027462	1	6839	6839		21.96	0	1	20149			18756	2805	15296	15318	20797	20797					0.08115528591372367
IKIRPTAAI	9	Unmodified	_IKIRPTAAI_					0	0	0		ENSG00000178235|ENST00000674365|SLITRK1	ENSG00000178235|ENST00000674365|SLITRK1	ENSG00000178235|ENST00000674365|SLITRK1	MULTI-MSMS	OvCa9_classI_Rep3	3	491.8238525390625	2	491.824027	981.633501	0.46179	0.00022712	-0.7084	-0.00034841	-0.24661	-0.00012129	491.82354825905855	68.425	1.4991	65.61	65.262	66.761	-2.8144					71	29	4	0	0	0	0.5811	1	2969	2969		34.173	4.331	1	317880			18757	7744	15297	15319	20798	20798					0.14194916473547892
IKISRIQLY	9	Unmodified	_IKISRIQLY_					0	0	0			REV__ENSG00000163093|ENST00000295240|BBS5	REV__ENSG00000163093|ENST00000295240|BBS5	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.3290405273438	2	567.355691	1132.69683	1.2111	0.00068711	0.27666	0.00015697	1.4877	0.00084407	567.3559073140374	90.841	0.52117	90.841	90.577	91.098	0					24	12	3	0	0	0	0.027462	1	9786	9786		25.574	4.6271	1	956270	+		18758	20807	15298	15320	20799	20799					0.13578857190827875
IKIWKKII	8	Unmodified	_IKIWKKII_					0	0	0		tr|A0A553SJM0|A0A553SJM0_NIACIGlycosyltransferasefamily39proteinOS=NialliacirculansOX=1397GN=CEQ21_17055PE=4SV=1	tr|A0A553SJM0|A0A553SJM0_NIACIGlycosyltransferasefamily39proteinOS=NialliacirculansOX=1397GN=CEQ21_17055PE=4SV=1	tr|A0A553SJM0|A0A553SJM0_NIACIGlycosyltransferasefamily39proteinOS=NialliacirculansOX=1397GN=CEQ21_17055PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	522.3389892578125	2	521.362788	1040.71102	0.48084	0.00025069	-3.2476	-0.0016932	-2.7668	-0.0014425	521.3623167184053	106.91	0.48228	105.64	105.37	105.86	-1.267					13	9	2	0	0	0	0.028476	1	7542	7542		31.955	6.3808	1	84979			18759	33517	15299	15321	20800	20800					0.19229554409730554
IKIYDVQHAN	10	Unmodified	_IKIYDVQHAN_					0	0	0		ENSG00000140395|ENST00000267973|SKIC8	ENSG00000140395|ENST00000267973|SKIC8	ENSG00000140395|ENST00000267973|SKIC8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	600.3001708984375	2	600.822212	1199.62987	-0.63464	-0.00038131	-1.2411	-0.00074567	-1.8757	-0.001127	601.3227603514267	73.06	0.28977	69.664	69.543	69.833	-3.3961					7	5	2	0	0	0	0.02717	1	5637	5637		23.523	3.5259	1	16710			18760	4836	15300	15322	20801	20801					0.03804201909042604
IKIYEDILI	9	Unmodified	_IKIYEDILI_					0	0	0			REV__tr|A0A7D6W431|A0A7D6W431_9CLOTAminopeptidasePfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07395PE=4SV=1	REV__tr|A0A7D6W431|A0A7D6W431_9CLOTAminopeptidasePfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07395PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	560.7979125976562	2	560.336633	1118.65871	-0.73592	-0.00041237	-1.4893	-0.00083453	-2.2253	-0.0012469	560.3358980403714	101.57	0.89218	100.8	100.42	101.31	-0.76401					37	17	3	0	0	0	0.027462	1	9281	9281		30.504	0	1	45191	+		18761	31932	15301	15323	20802	20802					0.10412926485469143
IKIYKGKKI	9	Unmodified	_IKIYKGKKI_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.82958984375	2	545.870977	1089.7274	0.30838	0.00016833	0.98443	0.00053737	1.2928	0.00070571	545.8713769096664	97.667	0.4052	95.289	95.013	95.418	-2.3786					10	7	2	0	0	0	0.027462	1	8654	8654		23.042	0	1	6255.1	+		18762	22662	15302	15324	20803	20803					0.1861263557584607
IKKAIQEP	8	Unmodified	_IKKAIQEP_					0	0	0			REV__tr|A0A553SMJ7|A0A553SMJ7_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_22755PE=4SV=1	REV__tr|A0A553SMJ7|A0A553SMJ7_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_22755PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.2788391113281	2	463.78711	925.559667	2.1491	0.00099674	0.086653	4.0188E-05	2.2358	0.0010369	463.78703943241396	82.257	0.54711	82.257	82.061	82.609	0					18	12	2	0	0	0	0.028476	1	8528	8528		44.117	5.3107	1	415770	+		18763	30338	15303	15325	20804	20804					0.09390948311215652
IKKALKAR	8	Unmodified	_IKKALKAR_					0	0	0			REV__tr|A0A7D6ZRW4|A0A7D6ZRW4_9CLOTAminotransferaseclassIII-foldpyridoxalphosphate-dependentenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_13750PE=3SV=1	REV__tr|A0A7D6ZRW4|A0A7D6ZRW4_9CLOTAminotransferaseclassIII-foldpyridoxalphosphate-dependentenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_13750PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.2841796875	2	464.326737	926.63892	-0.9303	-0.00043196	-2.3127	-0.0010739	-3.243	-0.0015058	464.3258957780437	96.01	0.15179	93.584	93.457	93.609	-2.4256					4	2	2	0	0	0	0.028476	1	8450	8450		24.203	5.8783	1	6811.3	+		18764	32170	15304	15326	20805	20805					0.17266640056016058
IKKDLALGR	9	Unmodified	_IKKDLALGR_					0	0	0		ENSG00000165694|ENST00000298542|FRMD7;nc|ENSG00000165694|Q6ZUT3-2|FRMD7	ENSG00000165694|ENST00000298542|FRMD7	ENSG00000165694|ENST00000298542|FRMD7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.79400634765625	2	507.326934	1012.63931	-1.2755	-0.00064709	0.40421	0.00020507	-0.87127	-0.00044202	507.3271226370603	71.557	1.5624	68.101	67.727	69.289	-3.4563					62	31	4	0	0	0	0.027462	1	5464	5464		39.253	0	1	239150			18765	6592	15305	15327	20806	20806					0.1335001498522388
IKKDLALGR	9	Unmodified	_IKKDLALGR_					0	0	0		ENSG00000165694|ENST00000298542|FRMD7;nc|ENSG00000165694|Q6ZUT3-2|FRMD7	ENSG00000165694|ENST00000298542|FRMD7	ENSG00000165694|ENST00000298542|FRMD7	MULTI-MATCH	OvCa99_classI_Rep5	1		2	507.326934	1012.63931	-0.6196	-0.00031434	0.71355	0.000362	0.093952	4.7664E-05	507.3269958381355	68.234	0.84074	68.234	67.683	68.523	0	0.066488	0.00024219	NaN	39.253	25	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	887420			18766	6592	15305	15327							0.1335001498522388
IKKDYGTVVK	10	Unmodified	_IKKDYGTVVK_					0	0	0			REV__tr|A0A7D6ZWI1|A0A7D6ZWI1_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17915PE=4SV=1	REV__tr|A0A7D6ZWI1|A0A7D6ZWI1_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17915PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8422241210938	2	575.845156	1149.67576	-4.018	-0.0023138	0.54994	0.00031668	-3.4681	-0.0019971	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.66944	1	12318	12318		33.922	4.7516	1	445630	+		18767	32289	15306	15328	20807	20807					0.10690847091268552
IKKELITN	8	Unmodified	_IKKELITN_					0	0	0		tr|A0A7D6VSA2|A0A7D6VSA2_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15310PE=4SV=1	tr|A0A7D6VSA2|A0A7D6VSA2_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15310PE=4SV=1	tr|A0A7D6VSA2|A0A7D6VSA2_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15310PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.8016357421875	2	479.800217	957.585882	0.6793	0.00032593	-0.75053	-0.0003601	-0.071227	-3.4175E-05	479.79971261114326	97.623	1.3666	95.245	95.013	96.38	-2.3786					56	26	3	0	0	0	0.28381	1	8668	8668		110.12	16.924	1	285700			18768	35003	15307	15329	20808	20808					0.10539217482687491
IKKENPFPAVC	11	Unmodified	_IKKENPFPAVC_					0	0	0		tr|A0A7D6ZRE2|A0A7D6ZRE2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12335PE=4SV=1	tr|A0A7D6ZRE2|A0A7D6ZRE2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12335PE=4SV=1	tr|A0A7D6ZRE2|A0A7D6ZRE2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12335PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	624.0101928710938	2	623.336641	1244.65873	0.24444	0.00015237	1.6523	0.0010299	1.8967	0.0011823	623.3376095566152	77.954	1.1493	75.602	75.304	76.453	-2.3527					37	22	2	0	0	0	0.024914	1	4077	4077		49.536	26.013	1	117130			18769	35713	15308	15330	20809	20809					0.04618603213816641
IKKENPFPAVC	11	Unmodified	_IKKENPFPAVC_					0	0	0		tr|A0A7D6ZRE2|A0A7D6ZRE2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12335PE=4SV=1	tr|A0A7D6ZRE2|A0A7D6ZRE2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12335PE=4SV=1	tr|A0A7D6ZRE2|A0A7D6ZRE2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12335PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	623.336641	1244.65873	-0.95988	-0.00059833	3.0046	0.0018729	2.0447	0.0012745	623.3384027949609	77.679	0.83568	75.889	75.468	76.304	-1.7894	0.14286	0.0014923	NaN	49.536	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29698			18770	35713	15308	15330							0.04618603213816641
IKKENPFPAVC	11	Unmodified	_IKKENPFPAVC_					0	0	0		tr|A0A7D6ZRE2|A0A7D6ZRE2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12335PE=4SV=1	tr|A0A7D6ZRE2|A0A7D6ZRE2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12335PE=4SV=1	tr|A0A7D6ZRE2|A0A7D6ZRE2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12335PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	623.336641	1244.65873	0.058546	3.6494E-05	1.5401	0.00096002	1.5987	0.00099652	623.3376317569008	78.548	1.1326	75.748	75.523	76.655	-2.7992	0.0020119	-0.00033334	NaN	49.536	27	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108500			18771	35713	15308	15330							0.04618603213816641
IKKERSPRPQ	10	Unmodified	_IKKERSPRPQ_					0	0	0		ASAP1|p.K992Qfs*25|1|0.06|ENSG00000153317|chr8:130060797-130060798|-/G|frameshift_variant;ENSG00000153317|ENST00000518721|ASAP1;nc|ENSG00000153317|Q9ULH1-2|ASAP1	ASAP1|p.K992Qfs*25|1|0.06|ENSG00000153317|chr8:130060797-130060798|-/G|frameshift_variant	ASAP1|p.K992Qfs*25|1|0.06|ENSG00000153317|chr8:130060797-130060798|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	619.86865234375	2	619.870028	1237.7255	-2.7857	-0.0017268	1.79	0.0011095	-0.99576	-0.00061724	619.8709153162803	147.4	3.9416	146.45	144.36	148.3	-0.9512					241	78	4	0	0	0	0.74374	1	12422	12422		25.574	1.0549	1	225770			18772	118	15309	15331	20810	20810					0.11614974819917734
IKKERSPRPQ	10	Unmodified	_IKKERSPRPQ_					0	0	0		ASAP1|p.K992Qfs*25|1|0.06|ENSG00000153317|chr8:130060797-130060798|-/G|frameshift_variant;ENSG00000153317|ENST00000518721|ASAP1;nc|ENSG00000153317|Q9ULH1-2|ASAP1	ASAP1|p.K992Qfs*25|1|0.06|ENSG00000153317|chr8:130060797-130060798|-/G|frameshift_variant	ASAP1|p.K992Qfs*25|1|0.06|ENSG00000153317|chr8:130060797-130060798|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8699340820312	2	619.870028	1237.7255	-1.8762	-0.001163	0.9332	0.00057847	-0.94295	-0.00058451	619.8704234308321	147.79	3.8764	146.35	144.25	148.12	-1.4351					189	77	4	0	0	0	0.78463	1	14632	14632		20.947	0	1	269210			18773	118	15309	15331	20811	20811					0.11614974819917734
IKKETCLKL	9	Unmodified	_IKKETCLKL_					0	0	0			REV__ENST00000378434.8_1_13:48987002-48987041:-|nuORF	REV__ENST00000378434.8_1_13:48987002-48987041:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	538.32861328125	2	538.330827	1074.6471	-0.88876	-0.00047845	-2.7521	-0.0014815	-3.6409	-0.00196	538.329151646269	83.15	2.4766	81.551	81.167	83.643	-1.5989					116	49	4	0	0	0	0.13326	1	7128	7128		88.177	0.4805	1	763280	+		18774	25140	15310	15332	20812	20812					0.11276406190472699
IKKETCLKL	9	Unmodified	_IKKETCLKL_					0	0	0			REV__ENST00000378434.8_1_13:48987002-48987041:-|nuORF	REV__ENST00000378434.8_1_13:48987002-48987041:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.3289794921875	2	538.330827	1074.6471	0.032421	1.7453E-05	-3.7098	-0.0019971	-3.6774	-0.0019796	538.3286452406022	84.37	2.265	81.707	81.412	83.677	-2.6629					106	46	4	0	0	0	0.075618	1	7077	7077		104.01	2.761	1	906360	+		18775	25140	15310	15332	20813	20813					0.11276406190472699
IKKFPNVK	8	Unmodified	_IKKFPNVK_					0	0	0			REV__tr|A0A7D6ZFM9|A0A7D6ZFM9_9CLOTNAD(P)H-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18535PE=4SV=1	REV__tr|A0A7D6ZFM9|A0A7D6ZFM9_9CLOTNAD(P)H-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18535PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.2811584472656	2	487.313295	972.612037	0.64272	0.00031321	-1.2297	-0.00059926	-0.587	-0.00028605	487.31246716851587	82.2	0.72898	80.551	80.127	80.856	-1.6485					17	13	2	0	0	0	0.028476	1	7027	7027		42.474	3.6683	1	16236	+		18776	31977	15311	15333	20814	20814					0.12463531444836917
IKKGKIVSL	9	Unmodified	_IKKGKIVSL_					0	0	0		nc|ENSG00000125775|Q9H190-3|SDCBP2;ENSG00000125775|ENST00000360779|SDCBP2	nc|ENSG00000125775|Q9H190-3|SDCBP2	nc|ENSG00000125775|Q9H190-3|SDCBP2	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.31805419921875	2	493.342052	984.669552	-0.31056	-0.00015321	3.9749	0.001961	3.6643	0.0018078	493.34351041885606	103.69	0.49371	103.12	102.88	103.37	-0.57639					12	9	2	0	0	0	0.027402	1	9573	9573		76.774	17.992	1	8243.3			18777	3734	15312	15334	20815	20815					0.17660373650392103
IKKHIFTG	8	Unmodified	_IKKHIFTG_					0	0	0			REV__tr|A0A553SSN2|A0A553SSN2_NIACIPhosphatetransportsystempermeaseproteinPstAOS=NialliacirculansOX=1397GN=pstAPE=3SV=1	REV__tr|A0A553SSN2|A0A553SSN2_NIACIPhosphatetransportsystempermeaseproteinPstAOS=NialliacirculansOX=1397GN=pstAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	472.2872619628906	2	472.28982	942.565087	-4.0924	-0.0019328	-0.081842	-3.8653E-05	-4.1743	-0.0019715	472.28971542959135	151.08	2.3118	150.13	149.45	151.76	-0.95645					105	45	4	0	0	0	0.73938	1	12830	12830		31.955	1.4512	1	815680	+		18778	30853	15313	15335	20816	20816					0.0915067189371257
IKKHKSEV	8	Unmodified	_IKKHKSEV_					0	0	0			REV__ENST00000389629.8_1_15:41773952-41773988:+|nuORF	REV__ENST00000389629.8_1_15:41773952-41773988:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.25543212890625	2	484.798009	967.581465	-0.067406	-3.2678E-05	0.0056527	2.7404E-06	-0.061753	-2.9938E-05	484.7977074939252	71.064	0.38989	71.064	70.877	71.267	0					15	9	2	0	0	0	0.028476	1	6827	6827		42.474	1.9018	1	338940	+		18779	25232	15314	15336	20817	20817					0.09637753059803345
IKKIGTDMI	9	Unmodified	_IKKIGTDMI_					0	0	0		tr|A0A553SNU6|A0A553SNU6_NIACIYlmC/YmxHfamilysporulationproteinOS=NialliacirculansOX=1397GN=CEQ21_25240PE=4SV=1	tr|A0A553SNU6|A0A553SNU6_NIACIYlmC/YmxHfamilysporulationproteinOS=NialliacirculansOX=1397GN=CEQ21_25240PE=4SV=1	tr|A0A553SNU6|A0A553SNU6_NIACIYlmC/YmxHfamilysporulationproteinOS=NialliacirculansOX=1397GN=CEQ21_25240PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	509.80462646484375	2	509.801903	1017.58925	-0.41042	-0.00020923	4.0745	0.0020772	3.6641	0.001868	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.67509	2	13588	13571;13588		23.042	2.0956	1	150140			18780	33963	15315	15337	20818;20819	20819					0.08116144265045477
IKKIGYNPDT	10	Unmodified	_IKKIGYNPDT_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENST00000443590.1_1_2:107314489-107314633:-|nuORF;ENST00000451469.1_1_3:39400337-39400661:+|nuORF	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	OvCa99_classI_Rep5	1	574.8193969726562	2	574.819138	1147.62372	-0.35141	-0.000202	0.91311	0.00052487	0.5617	0.00032288	574.8195827942154	22.441	0.94571	22.441	22.3	23.246	0					38	20	2	0	0	0	0.82648	1	234	234		15.642	1.5047	1	67875			18781	5844	15316	15338	20820	20820					0.05581683677496585
IKKIHEEII	9	Unmodified	_IKKIHEEII_					0	0	0			REV__tr|A0A7D6ZV03|A0A7D6ZV03_9CLOTFe-onlynitrogenaseaccessoryproteinAnfOOS=ClostridiumintestinaleOX=36845GN=HZF06_13440PE=4SV=1	REV__tr|A0A7D6ZV03|A0A7D6ZV03_9CLOTFe-onlynitrogenaseaccessoryproteinAnfOOS=ClostridiumintestinaleOX=36845GN=HZF06_13440PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	561.8469848632812	2	561.847699	1121.68084	1.4749	0.00082867	-3.2225	-0.0018106	-1.7476	-0.00098188	561.845750192742	157.32	1.5158	157.32	156.95	158.46	0					97	30	5	0	0	0	0.59983	1	18433	18433		31.955	1.4512	1	1429200	+		18782	32233	15317	15339	20821	20821					0.12487150953893433
IKKIQSITYG	10	Unmodified	_IKKIQSITYG_					0	0	0			REV__tr|A0A7D6VSN8|A0A7D6VSN8_9CLOTABC3transporterpermeaseproteindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13645PE=4SV=1	REV__tr|A0A7D6VSN8|A0A7D6VSN8_9CLOTABC3transporterpermeaseproteindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13645PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8427124023438	2	575.845156	1149.67576	-2.8608	-0.0016474	-0.58729	-0.00033819	-3.4481	-0.0019856	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.78463	1	14691	14691		20.947	0	1	356230	+		18783	31525	15318	15340	20822	20822					0.10690847091268552
IKKKGDKIE	9	Unmodified	_IKKKGDKIE_					0	0	0			REV__tr|A0A553SIJ0|A0A553SIJ0_NIACIPeptidaseS8OS=NialliacirculansOX=1397GN=CEQ21_14910PE=3SV=1	REV__tr|A0A553SIJ0|A0A553SIJ0_NIACIPeptidaseS8OS=NialliacirculansOX=1397GN=CEQ21_14910PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	530.3323974609375	2	529.832049	1057.64954	0.017891	9.4794E-06	-1.2154	-0.00064396	-1.1975	-0.00063448	529.8337061971487	131.67	1.3911	130.54	130.24	131.63	-1.1249					78	27	4	0	0	0	0.5811	1	10492	10492		34.173	1.3601	1	122000	+		18784	29895	15319	15341	20823	20823					0.12302577919808755
IKKKKGGNFH	10	Unmodified	_IKKKKGGNFH_					0	0	0			REV__tr|A0A553SN12|A0A553SN12_NIACIATP-dependentRNAhelicaseDbpAOS=NialliacirculansOX=1397GN=dbpAPE=3SV=1	REV__tr|A0A553SN12|A0A553SN12_NIACIATP-dependentRNAhelicaseDbpAOS=NialliacirculansOX=1397GN=dbpAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	578.848388671875	2	578.851107	1155.68766	-1.1333	-0.00065603	-2.5625	-0.0014833	-3.6958	-0.0021393	578.8495848416571	28.349	0.24917	28.349	28.19	28.439	0					11	4	3	0	0	0	0.72319	1	917	917		27.882	1.1893	1	209410	+		18785	30386	15320	15342	20824	20824					0.11604508625123344
IKKKKLFY	8	Unmodified	_IKKKKLFY_					0	0	0		ENST00000405334.5_1_2:37334471-37336383:-|nuORF	ENST00000405334.5_1_2:37334471-37336383:-|nuORF	ENST00000405334.5_1_2:37334471-37336383:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.2880249023438	2	534.35242	1066.69029	1.637	0.00087473	-2.6133	-0.0013964	-0.9763	-0.00052169	534.350949758978	80.884	0.50565	80.884	80.615	81.12	0					14	11	2	0	0	0	0.028476	1	8310	8310		26.796	7.4361	1	157450			18786	11463	15321	15343	20825	20825					0.1596096403006868
IKKKLEHGL	9	Unmodified	_IKKKLEHGL_					0	0	0		ENSG00000004766|ENST00000305866|VPS50;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;nc|ENSG00000004766|Q96JG6-3|VPS50;ENST00000471188.5_1_7:92887656-92969983:+|nuORF	ENSG00000004766|ENST00000305866|VPS50	ENSG00000004766|ENST00000305866|VPS50	MULTI-MSMS	OvCa9_classI_Rep3	3	533.3392333984375	2	533.342584	1064.67061	-5.4486	-0.002906	1.332	0.00071043	-4.1166	-0.0021955	533.3431726379797	156.49	1.098	155.32	155.02	156.12	-1.1707					66	21	4	0	0	0	0.65371	1	13511	13511		25.574	0.12388	1	385900			18787	831	15322	15344	20826	20826					0.1408658801931324
IKKKLEHGL	9	Unmodified	_IKKKLEHGL_					0	0	0		ENSG00000004766|ENST00000305866|VPS50;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;nc|ENSG00000004766|Q96JG6-3|VPS50;ENST00000471188.5_1_7:92887656-92969983:+|nuORF	ENSG00000004766|ENST00000305866|VPS50	ENSG00000004766|ENST00000305866|VPS50	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.3407592773438	2	533.342584	1064.67061	-6.1908	-0.0033018	1.9226	0.0010254	-4.2682	-0.0022764	533.3435201452669	156.94	1.5192	155.39	155.04	156.56	-1.545					135	41	5	0	0	0	0.48324	1	15532	15532		44.117	8.4985	1	1621700			18788	831	15322	15344	20827	20827					0.1408658801931324
IKKKTNPR	8	Unmodified	_IKKKTNPR_					0	0	0		nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.8021240234375	2	492.819276	983.623999	0.5121	0.00025237	-3.7266	-0.0018365	-3.2145	-0.0015842	492.81724180991966	60.85	0.34996	57.42	57.294	57.644	-3.43					9	6	2	0	0	0	0.028476	1	4165	4165		21.96	1.013	1	59876			18789	6329	15323	15345	20828	20828					0.13153148188030173
IKKLFHSL	8	Unmodified	_IKKLFHSL_					0	0	0			REV__ENST00000220514.7_1_15:41601781-41601892:-|nuORF	REV__ENST00000220514.7_1_15:41601781-41601892:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.7814025878906	2	493.313295	984.612037	0.80321	0.00039623	1.3267	0.00065445	2.1299	0.0010507	493.31379193713684	90.896	0.39687	90.896	90.777	91.174	0					14	9	2	0	0	0	0.028476	1	9761	9761		17.365	13.38	1	179280	+		18790	23740	15324	15346	20829	20829					0.11911531444843604
IKKLKKITK	9	Unmodified	_IKKLKKITK_					0	0	0			REV__tr|A0A7D6ZI17|A0A7D6ZI17_9CLOTDNAtopoisomerase(ATP-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=HZF06_05265PE=4SV=1	REV__tr|A0A7D6ZI17|A0A7D6ZI17_9CLOTDNAtopoisomerase(ATP-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=HZF06_05265PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.3043823242188	2	550.399902	1098.78525	-0.40925	-0.00022525	-4.4415	-0.0024446	-4.8508	-0.0026699	550.3971338782096	63.643	0.38124	60.168	60.061	60.442	-3.475					10	7	2	0	0	0	0.027461	1	4483	4483		40.778	0	1	14518	+		18791	32044	15325	15347	20830	20830					0.23980897501223808
IKKLLIAN	8	Unmodified	_IKKLLIAN_					0	0	0		tr|A0A553SKW2|A0A553SKW2_NIACIBiotincarboxylaseOS=NialliacirculansOX=1397GN=accCPE=4SV=1	tr|A0A553SKW2|A0A553SKW2_NIACIBiotincarboxylaseOS=NialliacirculansOX=1397GN=accCPE=4SV=1	tr|A0A553SKW2|A0A553SKW2_NIACIBiotincarboxylaseOS=NialliacirculansOX=1397GN=accCPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	456.780029296875	2	456.81567	911.616788	0.22744	0.0001039	4.1381	0.0018904	4.3656	0.0019943	456.81742985859967	80.111	0.34734	77.771	77.513	77.861	-2.3399					10	6	2	0	0	0	0.028476	1	4367	4367		17.365	0	1	8883.1			18792	33659	15326	15348	20831	20831					0.1574441558758508
IKKLLPLILI	10	Unmodified	_IKKLLPLILI_					0	0	0		tr|A0A7D6ZPU4|A0A7D6ZPU4_9CLOTDUF3048domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21920PE=4SV=1	tr|A0A7D6ZPU4|A0A7D6ZPU4_9CLOTDUF3048domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21920PE=4SV=1	tr|A0A7D6ZPU4|A0A7D6ZPU4_9CLOTDUF3048domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21920PE=4SV=1	MSMS	OvCa9_classI_Rep3	3	582.4242553710938	2	582.428128	1162.8417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	156.1	1	155.02	154.52	155.52	-1.073								0	0	0	0.17874	1	13425	13425		10.866	0	1				18793	35693	15327	15349	20832	20832					0.2667952533793141
IKKPIDEVEVI	11	Unmodified	_IKKPIDEVEVI_					0	0	0		tr|A0A7D6VNV0|A0A7D6VNV0_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_14145PE=4SV=1	tr|A0A7D6VNV0|A0A7D6VNV0_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_14145PE=4SV=1	tr|A0A7D6VNV0|A0A7D6VNV0_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_14145PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8826293945312	2	641.884478	1281.7544	-5.3554	-0.0034376	2.3959	0.0015379	-2.9596	-0.0018997	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.68399	2	13110	13007;13110		35.152	4.6484	1	804890			18794	34730	15328	15350	20833;20834	20834					0.12479654605704127
IKKPIDEVEVI	11	Unmodified	_IKKPIDEVEVI_					0	0	0		tr|A0A7D6VNV0|A0A7D6VNV0_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_14145PE=4SV=1	tr|A0A7D6VNV0|A0A7D6VNV0_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_14145PE=4SV=1	tr|A0A7D6VNV0|A0A7D6VNV0_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_14145PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8828125	2	641.884478	1281.7544	-3.6311	-0.0023307	0.70501	0.00045254	-2.9261	-0.0018782	641.8847801872174	153.39	4.0845	151.94	150.68	154.77	-1.4516					420	106	6	0	0	0	0.67529	1	15211	15211		37.812	2.6595	1	809780			18795	34730	15328	15350	20835	20835					0.12479654605704127
IKKRAAPLVR	10	Unmodified	_IKKRAAPLVR_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa9_classI_Rep3	3	576.3535766601562	2	576.3904	1150.76625	-0.44848	-0.0002585	-2.4751	-0.0014266	-2.9235	-0.0016851	576.3882270023485	71.955	0.44035	69.352	69.18	69.62	-2.6023					10	8	2	0	0	0	0.026734	1	3419	3419		31.53	3.6476	1	18433			18796	5793;36288	15329	15351	20836	20836					0.1968936093019238
IKKRKKGK	8	Unmodified	_IKKRKKGK_					0	0	0			REV__ENST00000262949.7_1_19:3573736-3575577:+|nuORF	REV__ENST00000262949.7_1_19:3573736-3575577:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.3222351074219	2	493.353286	984.692019	0.44587	0.00021997	1.0222	0.00050432	1.4681	0.00072429	493.3540889483714	78.465	0.39162	76.725	76.512	76.903	-1.7398					12	7	3	0	0	0	0.028476	1	6555	6555		25.45	0	1	28022	+		18797	16781	15330	15352	20837	20837					0.1990601783869579
IKKRSVGHKN	10	Unmodified	_IKKRSVGHKN_					0	0	0			REV__nc|ENSG00000244754|Q92802-2|N4BP2L2;REV__nc|ENSG00000244754|Q92802-3|N4BP2L2	REV__nc|ENSG00000244754|Q92802-3|N4BP2L2	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.81787109375	2	583.859464	1165.70437	0.57481	0.00033561	3.7555	0.0021927	4.3303	0.0025283	583.8616876246347	103.23	0.75383	103.23	102.98	103.73	0					44	17	3	0	0	0	0.026464	1	11579	11579		60.118	0	1	1512400	+		18798	29165;29166	15331	15353	20838	20838					0.12815009511086828
IKKSKNVLN	9	Unmodified	_IKKSKNVLN_					0	0	0			REV__ENSG00000096696|ENST00000379802|DSP	REV__ENSG00000096696|ENST00000379802|DSP	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.3360595703125	2	522.332216	1042.64988	1.3895	0.0007258	-2.891	-0.0015101	-1.5015	-0.00078428	522.3306496485915	108.73	0.69748	108.73	108.5	109.19	0					25	15	3	0	0	0	0.027447	1	12318	12318		39.253	0	1	1062500	+		18799	17308	15332	15354	20839	20839					0.13025997639647358
IKKSVEPVKTV	11	Unmodified	_IKKSVEPVKTV_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa9_classI_Rep4_	4	614.3848876953125	2	614.387188	1226.75982	-5.2638	-0.003234	1.9349	0.0011888	-3.3289	-0.0020452	614.3881829227306	157.6	1.278	156.06	155.71	156.98	-1.545					89	35	4	0	0	0	0.7046	2	15592	15559;15592		28.081	3.4761	1	332270	+		18800	28942;32737	15333	15355	20840;20841	20841					0.15551378188160925
IKKTSVPN	8	Unmodified	_IKKTSVPN_					0	0	0			REV__SVA_D_dup1417|chr21:8350923-8352925:-|16.64451059665088|0.0287746324772857|9.18|429.0|85|3|anti-sense	REV__SVA_D_dup1417|chr21:8350923-8352925:-|16.64451059665088|0.0287746324772857|9.18|429.0|85|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	443.7732849121094	2	443.77146	885.528367	0.65363	0.00029006	0.91727	0.00040706	1.5709	0.00069712	443.77196899184446	50.97	0.98718	50.97	50.64	51.627	0					35	22	2	0	0	0	0.58851	1	3912	3912		66.429	5.4573	1	3101700	+		18801	29478	15334	15356	20842	20842					0.08102375277132978
IKKVLEDPEIV	11	Unmodified	_IKKVLEDPEIV_					0	0	0			REV__tr|A0A553SM51|A0A553SM51_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21830PE=4SV=1	REV__tr|A0A553SM51|A0A553SM51_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21830PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	641.882080078125	2	641.884478	1281.7544	-5.3554	-0.0034376	2.3959	0.0015379	-2.9596	-0.0018997	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.72473	1	13014	13014		19.104	0	1	804890	+		18802	30296	15335	15357	20843	20843					0.1247965460568139
IKKVPKLNI	9	Unmodified	_IKKVPKLNI_					0	0	0		tr|A0A7D6VWI1|A0A7D6VWI1_9CLOTMurR/RpiRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_04165PE=4SV=1	tr|A0A7D6VWI1|A0A7D6VWI1_9CLOTMurR/RpiRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_04165PE=4SV=1	tr|A0A7D6VWI1|A0A7D6VWI1_9CLOTMurR/RpiRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_04165PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.8134765625	2	526.863152	1051.71175	0.28138	0.00014825	-3.4005	-0.0017916	-3.1192	-0.0016434	526.8612925705083	74.18	0.19296	74.18	74.056	74.249	0					7	4	2	0	0	0	0.027462	1	7330	7330		31.955	0	1	158530			18803	35250	15336	15358	20844	20844					0.1879634905878902
IKKVVDSKEPI	11	Unmodified	_IKKVVDSKEPI_					0	0	0		tr|A0A553SMS2|A0A553SMS2_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_23110PE=3SV=1	tr|A0A553SMS2|A0A553SMS2_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_23110PE=3SV=1	tr|A0A553SMS2|A0A553SMS2_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_23110PE=3SV=1	MSMS	OvCa9_classI_Rep4_	4	628.3823852539062	2	628.384645	1254.75474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	150.5	1	149.07	148.57	149.57	-1.4344								0	0	0	0.19474	1	14868	14868		21.686	3.4237	1				18804	33867	15337	15359	20845	20845					0.1375507432555878
IKKWIYLL	8	Unmodified	_IKKWIYLL_					0	0	0		tr|A0A7D6VMQ7|A0A7D6VMQ7_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12725PE=4SV=1	tr|A0A7D6VMQ7|A0A7D6VMQ7_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12725PE=4SV=1	tr|A0A7D6VMQ7|A0A7D6VMQ7_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12725PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	538.8258666992188	2	538.846971	1075.67939	0.0057677	3.1079E-06	-2.2467	-0.0012106	-2.2409	-0.0012075	538.8457922477166	92.027	0.2619	90.792	90.694	90.956	-1.2355					7	4	2	0	0	0	0.028476	1	8170	8170		60.294	2.064	1	7634.6			18805	34667	15338	15360	20846	20846					0.14457561655785867
IKKWIYLL	8	Unmodified	_IKKWIYLL_					0	0	0		tr|A0A7D6VMQ7|A0A7D6VMQ7_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12725PE=4SV=1	tr|A0A7D6VMQ7|A0A7D6VMQ7_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12725PE=4SV=1	tr|A0A7D6VMQ7|A0A7D6VMQ7_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12725PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.8267211914062	2	538.846971	1075.67939	-0.49673	-0.00026766	2.1273	0.0011463	1.6306	0.00087865	538.8483454767528	92.822	0.23698	90.86	90.744	90.981	-1.9617					7	4	2	0	0	0	0.028476	1	5903	5903		42.474	0	1	10835			18806	34667	15338	15360	20847	20847					0.14457561655785867
IKKYDKIMLYK	11	Unmodified	_IKKYDKIMLYK_					0	0	0			REV__ENST00000481096.6_1_X:51808851-51809606:-|nuORF	REV__ENST00000481096.6_1_X:51808851-51809606:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	481.6192932128906	3	481.619508	1441.83669	1.3927	0.00067077	-1.8606	-0.00089608	-0.46781	-0.00022531	481.6185706788555	28.734	0.83069	26.024	25.806	26.636	-2.7097					43	17	4	0	0	0	0.72511	1	621	621		14.086	0.57807	1	87409	+		18807	20387	15339	15361	20848	20848					0.13344853412991142
IKLCVPVLK	9	Unmodified	_IKLCVPVLK_					0	0	0		ZNF551|p.M108L|1|0.05|ENSG00000204519|chr19:57686597-57686597|A/T|missense_variant	ZNF551|p.M108L|1|0.05|ENSG00000204519|chr19:57686597-57686597|A/T|missense_variant	ZNF551|p.M108L|1|0.05|ENSG00000204519|chr19:57686597-57686597|A/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	506.83447265625	2	506.833006	1011.65146	-0.68698	-0.00034819	4.2737	0.0021661	3.5867	0.0018179	506.83503631958763	37.597	0.95667	37.597	37.391	38.348	0					43	20	4	0	0	0	0.55588	1	2075	2075		37.159	5.6293	1	468650			18808	36324	15340	15362	20849	20849					0.14609915404059848
IKLEEGWGGVR	11	Unmodified	_IKLEEGWGGVR_					0	0	0		ENSG00000188060|ENST00000465518|RAB42;nc|ENSG00000188060|Q8N4Z0-1|RAB42	ENSG00000188060|ENST00000465518|RAB42	ENSG00000188060|ENST00000465518|RAB42	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.9081726074219	3	415.2313	1242.67207	0.2714	0.00011269	-2.8411	-0.0011797	-2.5697	-0.001067	415.22959991587	42.548	0.38635	42.548	42.453	42.839	0					10	8	2	0	0	0	0.025861	1	2776	2776		15.921	0	1	100540			18809	8450	15341	15363	20850	20850					0.0604417731740341
IKLEEMRLKL	10	Unmodified	_IKLEEMRLKL_					0	0	0			REV__nc|ENSG00000092036|Q9H6D7-2|HAUS4	REV__nc|ENSG00000092036|Q9H6D7-2|HAUS4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	424.89019775390625	3	424.928453	1271.76353	-0.042752	-1.8166E-05	-2.1401	-0.00090939	-2.1828	-0.00092755	425.2621143458264	21.584	0.81135	20.245	19.813	20.625	-1.3386					17	15	2	0	0	0	0.026906	1	177	177		41.427	11.876	1	10261	+		18810	17260	15342	15364	20851	20851					0.13851724690380252
IKLFPAKLR	9	Unmodified	_IKLFPAKLR_					0	0	0			REV__nc|ENSG00000161692|Q8NFT6-2|DBF4B	REV__nc|ENSG00000161692|Q8NFT6-2|DBF4B	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.325439453125	2	543.363319	1084.71209	-0.68059	-0.00036981	-3.6909	-0.0020055	-4.3715	-0.0023753	543.3609475573044	61.645	0.24535	61.645	61.458	61.704	0					7	5	2	0	0	0	0.027462	1	5422	5422		16.473	0	1	192080	+		18811	20705	15343	15365	20852	20852					0.1731176877863163
IKLKATTP	8	Unmodified	_IKLKATTP_					0	0	0			REV__ENSG00000081248|ENST00000362061|CACNA1S	REV__ENSG00000081248|ENST00000362061|CACNA1S	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.7765197753906	2	436.284203	870.553853	0.44403	0.00019372	-0.47159	-0.00020575	-0.027566	-1.2027E-05	436.28386237162107	90.489	1.5789	87.914	87.6	89.179	-2.575					62	30	3	0	0	0	0.028476	1	7762	7762		13.775	0.81615	1	269400	+		18812	17069	15344	15366	20853	20853					0.11339849799560398
IKLLCSVQY	9	Unmodified	_IKLLCSVQY_					0	0	0		MFSD6|p.V594Sfs*35|1|0.11|ENSG00000151690|chr2:190488804-190488805|-/A|frameshift_variant;ENSG00000151690|ENST00000392328|MFSD6	MFSD6|p.V594Sfs*35|1|0.11|ENSG00000151690|chr2:190488804-190488805|-/A|frameshift_variant	MFSD6|p.V594Sfs*35|1|0.11|ENSG00000151690|chr2:190488804-190488805|-/A|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.2872314453125	2	533.801903	1065.58925	-0.98027	-0.00052327	3.7904	0.0020233	2.8101	0.0015	533.8040095595635	65.884	0.6244	65.884	65.625	66.25	0					38	15	3	0	0	0	0.027462	1	6121	6121		34.173	8.7224	1	4413600			18813	5576	15345	15367	20854	20854					0.05908144265072224
IKLLETCTE	9	Unmodified	_IKLLETCTE_					0	0	0			REV__ENSG00000163596|ENST00000358299|ICA1L	REV__ENSG00000163596|ENST00000358299|ICA1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7803344726562	2	525.281	1048.54745	-0.96732	-0.00050812	2.5786	0.0013545	1.6113	0.00084639	525.282401262317	42.34	0.51241	42.34	41.94	42.453	0					20	11	2	0	0	0	0.027462	1	2712	2712		20.947	0	1	310150	+		18814	20857	15346	15368	20855	20855					0.02511543785885806
IKLLYFISLT	10	Unmodified	_IKLLYFISLT_					0	0	0			REV__ENSG00000255374|ENST00000531678|TAS2R43	REV__ENSG00000255374|ENST00000531678|TAS2R43	MULTI-MSMS	OvCa9_classI_Rep2	2	605.8713989257812	2	605.875925	1209.7373	-4.983	-0.0030191	-1.57	-0.00095122	-6.553	-0.0039703	605.874829866227	157.02	0.88571	156.79	156.54	157.42	-0.22696					68	24	4	0	0	0	0.71192	1	15991	15991		29.15	3.5755	1	101120	+		18815	23526	15347	15369	20856	20856					0.14081778790568933
IKLQSHLLT	9	Unmodified	_IKLQSHLLT_					0	0	0		ENSG00000221926|ENST00000649191|TRIM16	ENSG00000221926|ENST00000649191|TRIM16	ENSG00000221926|ENST00000649191|TRIM16	MULTI-MSMS	OvCa9_classI_Rep2	2	526.826904296875	2	526.826766	1051.63898	-1.2645	-0.00066616	0.28089	0.00014798	-0.98358	-0.00051818	526.8270166019133	100.56	1.3878	99.727	99.36	100.75	-0.83051					64	27	4	0	0	0	0.33652	1	9228	9228		58.782	4.0056	1	388760			18816	9236	15348	15370	20857	20857					0.11522595265364544
IKLTTDSTLF	10	Unmodified	_IKLTTDSTLF_					0	0	0		HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|156|1|anti-sense	HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|156|1|anti-sense	HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|156|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	569.7848510742188	2	569.821347	1137.62814	-0.91023	-0.00051867	1.8316	0.0010437	0.92135	0.00052501	569.82195014974	90.462	0.51335	88.382	88.209	88.722	-2.0805					13	9	2	0	0	0	0.026639	1	5646	5646		44.117	9.9443	1	22967			18817	14451	15349	15371	20858	20858					0.06483148100414837
IKLVAQAT	8	Unmodified	_IKLVAQAT_					0	0	0			REV__OR2H1|p.R225K|1|0.06|ENSG00000204688|chr6:29462443-29462443|G/A|missense_variant	REV__OR2H1|p.R225K|1|0.06|ENSG00000204688|chr6:29462443-29462443|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	421.7437744140625	2	422.268553	842.522553	0.56989	0.00024065	-0.36276	-0.00015318	0.20713	8.7465E-05	422.2681676356546	71.919	0.45808	71.919	71.707	72.165	0					20	10	3	0	0	0	0.028476	1	6967	6967		14.865	0	1	839660	+		18818	29268	15350	15372	20859	20859					0.09499276765461673
IKMEALLMV	9	Unmodified	_IKMEALLMV_					0	0	0			REV__ENSG00000143815|ENST00000272163|LBR	REV__ENSG00000143815|ENST00000272163|LBR	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.8277587890625	2	524.300681	1046.58681	0.10165	5.3297E-05	-1.4975	-0.00078514	-1.3959	-0.00073185	524.2997703442159	161.76	0.56238	161.76	161.46	162.02	0					23	10	3	0	0	0	0.027462	1	18975	18975		29.15	0	1	41415	+		18819	19869	15351	15373	20860	20860					0.06537972535761583
IKMEGQTKI	9	Unmodified	_IKMEGQTKI_					0	0	0			REV__L1ME4a_dup12675|chr6:37045387-37045843:+|1.4283673080813548|0.2832341124959364|2.33|429.0|6|1|sense	REV__L1ME4a_dup12675|chr6:37045387-37045843:+|1.4283673080813548|0.2832341124959364|2.33|429.0|6|1|sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	524.2708129882812	2	524.296985	1046.57942	0.22906	0.0001201	0.41269	0.00021637	0.64175	0.00033647	524.2968346919574	119.43	1.5324	118.4	117.88	119.41	-1.0271					78	30	4	0	0	0	0.027072	1	9172	9172		113.41	22.635	1	146860	+		18820	28441	15352	15374	20861	20861					0.05798956259673105
IKMIRKEDQGI	11	Unmodified	_IKMIRKEDQGI_					0	0	0		nc|ENSG00000163531|O94856-3|NFASC;nc|ENSG00000163531|O94856-8|NFASC;nc|ENSG00000163531|O94856-11|NFASC;nc|ENSG00000163531|O94856-5|NFASC;nc|ENSG00000163531|O94856-13|NFASC;nc|ENSG00000163531|O94856-7|NFASC;ENSG00000163531|ENST00000339876|NFASC;nc|ENSG00000163531|O94856-6|NFASC;ENST00000404977.6_1_1:204937408-204955114:+|nuORF;nc|ENSG00000163531|O94856-10|NFASC;nc|ENSG00000163531|O94856-12|NFASC;nc|ENSG00000163531|O94856-4|NFASC;ENST00000512826.5_1_1:204926851-204957975:+|nuORF;nc|ENSG00000163531|O94856-2|NFASC;NFASC|p.V609Sfs*5|1|0.02|ENSG00000163531|chr1:204976788-204976789|-/AGCTCTCA|frameshift_variant;nc|ENSG00000163531|O94856|NFASC	nc|ENSG00000163531|O94856-3|NFASC	nc|ENSG00000163531|O94856-3|NFASC	MULTI-SECPEP	OvCa9_classI_Rep2	2	444.2504577636719	3	444.255228	1329.74386	1.5737	0.00069912	-0.33926	-0.00015072	1.2344	0.0005484	444.25535304099805	64.456	0.94707	61.731	61.493	62.44	-2.7245					23	17	2	0	0	0	0.025714	1	4955	4955		19.263	0	1	213710			18821	15139	15353	15375	20862	20862					0.09217348679612769
IKMKPIMP	8	Unmodified	_IKMKPIMP_					0	0	0		ENST00000479868.6_1_3:10354804-10354891:-|nuORF	ENST00000479868.6_1_3:10354804-10354891:-|nuORF	ENST00000479868.6_1_3:10354804-10354891:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.74658203125	2	479.284834	956.555116	2.5991	0.0012457	4.0017	0.001918	6.6009	0.0031637	479.2863243426815	89.121	0.96471	89.121	88.551	89.516	0					36	23	2	0	0	0	0.028476	1	9440	9440		14.664	10.98	1	6680300			18822	12513	15354	15376	20863	20863					0.07510024572457041
IKMKPIMP	8	Unmodified	_IKMKPIMP_					0	0	0		ENST00000479868.6_1_3:10354804-10354891:-|nuORF	ENST00000479868.6_1_3:10354804-10354891:-|nuORF	ENST00000479868.6_1_3:10354804-10354891:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	479.284834	956.555116	1.4671	0.00070315	1.955	0.00093701	3.4221	0.0016402	479.28579671691904	90.409	2.4419	89.107	88.186	90.628	-1.302	-0.007016	-0.00013418	NaN	8.8223	65	47	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	237080			18823	12513	15354	15376							0.07510024572457041
IKMMQAVRQ	9	Unmodified	_IKMMQAVRQ_					0	0	0		nc|ENSG00000145990|Q9NXC2-2|GFOD1;ENSG00000145990|ENST00000379287|GFOD1	nc|ENSG00000145990|Q9NXC2-2|GFOD1	nc|ENSG00000145990|Q9NXC2-2|GFOD1	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.7922973632812	2	552.804454	1103.59435	1.6298	0.00090099	3.455	0.0019099	5.0848	0.0028109	552.8063115290392	65.355	1.2143	62.639	62.084	63.298	-2.7164					53	23	3	0	0	0	0.027462	1	5076	5076		30.504	0	1	54594			18824	5258	15355	15377	20864	20864					0.04670124856033908
IKMPKFNFSK	10	Unmodified	_IKMPKFNFSK_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;ENST00000525875.1_1_11:62201326-62284770:-|nuORF	ENSG00000124942|ENST00000378024|AHNAK;ENST00000525875.1_1_11:62201326-62284770:-|nuORF	ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.26220703125	3	413.902126	1238.68455	0.11994	4.9645E-05	-3.3521	-0.0013874	-3.2322	-0.0013378	414.2355249895414	20.395	0.40977	19.056	18.851	19.26	-1.3386					9	7	2	0	0	0	0.027138	1	45	45		17.833	0	1	4825.6			18825	3687;13203	15356	15378	20865	20865					0.07475497456084668
IKMQSHVE	8	Unmodified	_IKMQSHVE_					0	0	0		ENST00000490729.1_1_12:119175913-119176300:-|nuORF	ENST00000490729.1_1_12:119175913-119176300:-|nuORF	ENST00000490729.1_1_12:119175913-119176300:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.7467956542969	2	486.252577	970.490601	-0.78477	-0.0003816	1.2486	0.00060712	0.4638	0.00022553	486.2524214217158	53.533	0.21618	53.533	53.347	53.564	0					5	4	2	0	0	0	0.028476	1	4238	4238		34.173	7.4796	1	117200			18826	12702	15357	15379	20866	20866					0.004175410200218721
IKNEEIFKV	9	Unmodified	_IKNEEIFKV_					0	0	0			REV__tr|A0A7D6ZZS4|A0A7D6ZZS4_9CLOTBifunctional4-hydroxy-2-oxoglutaratealdolase/2-dehydro-3-deoxy-phosphogluconatealdolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07270PE=3SV=1	REV__tr|A0A7D6ZZS4|A0A7D6ZZS4_9CLOTBifunctional4-hydroxy-2-oxoglutaratealdolase/2-dehydro-3-deoxy-phosphogluconatealdolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07270PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	560.8051147460938	2	560.324057	1118.63356	0.82051	0.00045975	-0.769	-0.00043089	0.051502	2.8858E-05	560.3237551381515	113.1	0.5963	112.03	111.86	112.45	-1.0753					19	11	2	0	0	0	0.027462	1	8318	8318		27.882	2.3082	1	30433	+		18827	32420	15358	15380	20867	20867					0.07898871682891695
IKNEESEEAP	10	Unmodified	_IKNEESEEAP_					0	0	0			REV__nc|ENSG00000169604|Q9H6X2-2|ANTXR1	REV__nc|ENSG00000169604|Q9H6X2-2|ANTXR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.30126953125	2	573.269675	1144.5248	0.049531	2.8395E-05	-1.4867	-0.00085231	-1.4372	-0.00082391	573.2690209356762	46.304	0.39107	46.304	46.154	46.545	0					10	8	2	0	0	0	0.026802	1	3274	3274		34.173	0	1	71813	+		18828	28686	15359	15381	20868	20868					-0.04168384078047893
IKNEGLVI	8	Unmodified	_IKNEGLVI_					0	0	0		nc|ENSG00000172888|Q6ZSS3-2|ZNF621;ENSG00000172888|ENST00000339296|ZNF621	nc|ENSG00000172888|Q6ZSS3-2|ZNF621	nc|ENSG00000172888|Q6ZSS3-2|ZNF621	MULTI-MSMS	OvCa99_classI_Rep5	1	443.2733459472656	2	443.273835	884.533118	3.0133	0.0013357	-0.6033	-0.00026743	2.41	0.0010683	443.27336831154935	78.204	0.44543	78.204	78.011	78.457	0					19	10	3	0	0	0	0.2826	1	7920	7920		110.34	0	1	1418700			18829	7325	15360	15382	20869	20869					0.08623259419891838
IKNEGLVI	8	Unmodified	_IKNEGLVI_					0	0	0		nc|ENSG00000172888|Q6ZSS3-2|ZNF621;ENSG00000172888|ENST00000339296|ZNF621	nc|ENSG00000172888|Q6ZSS3-2|ZNF621	nc|ENSG00000172888|Q6ZSS3-2|ZNF621	MULTI-MATCH	OvCa9_classI_Rep2	2		2	443.273835	884.533118	2.0052	0.00088886	-7.2492	-0.0032134	-5.244	-0.0023245	443.2730331465327	80.265	0.89792	78.57	78.321	79.218	-1.6951	0.14354	-0.0056134	NaN	110.34	24	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11223			18830	7325	15360	15382							0.08623259419891838
IKNEGLVI	8	Unmodified	_IKNEGLVI_					0	0	0		nc|ENSG00000172888|Q6ZSS3-2|ZNF621;ENSG00000172888|ENST00000339296|ZNF621	nc|ENSG00000172888|Q6ZSS3-2|ZNF621	nc|ENSG00000172888|Q6ZSS3-2|ZNF621	MULTI-MATCH	OvCa9_classI_Rep3	3		2	443.273835	884.533118	0.099071	4.3915E-05	0.099861	4.4266E-05	0.19893	8.8181E-05	443.2736205741177	80.828	0.97727	78.505	77.979	78.957	-2.3226	0.078913	0.00090191	NaN	110.34	23	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20141			18831	7325	15360	15382							0.08623259419891838
IKNEQAIAIEE	11	Unmodified	_IKNEQAIAIEE_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1;REV__ENST00000367256.9_1_6:152443573-152639413:-|nuORF	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.57769775390625	3	419.894354	1256.66123	0.13177	5.5329E-05	0.76335	0.00032053	0.89512	0.00037586	419.89470429711696	33.307	0.39677	33.307	33.136	33.533	0					12	7	3	0	0	0	0.025624	1	1504	1504		32.034	11.197	1	45542	+		18832	18991;24893	15361	15383	20870	20870					0.04316730152481796
IKNFCIKKL	9	Unmodified	_IKNFCIKKL_					0	0	0			REV__ENST00000300107.7_1_15:65442808-65442961:-|nuORF	REV__ENST00000300107.7_1_15:65442808-65442961:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	553.8445434570312	2	553.841362	1105.66817	-0.55258	-0.00030604	3.5355	0.0019581	2.9829	0.0016521	553.8432194309323	50.663	0.78786	50.663	50.376	51.164	0					41	17	4	0	0	0	0.16524	1	3853	3853		82.305	23.523	1	2297000	+		18833	24229	15362	15384	20871	20871					0.11956416290013294
IKNGKLQCCR	10	Unmodified	_IKNGKLQCCR_					0	0	0		ENST00000429299.2_1_6:31548335-31548383:-|nuORF	ENST00000429299.2_1_6:31548335-31548383:-|nuORF	ENST00000429299.2_1_6:31548335-31548383:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.8438110351562	2	581.81281	1161.61107	-0.79002	-0.00045964	4.4404	0.0025835	3.6504	0.0021238	581.8152222067679	38.768	0.79959	38.768	38.576	39.376	0					40	17	3	0	0	0	0.027118	1	2281	2281		19.104	3.4617	1	386190			18834	11778	15363	15385	20872	20872					0.036726257419786634
IKNGLILIP	9	Unmodified	_IKNGLILIP_					0	0	0			REV__ENST00000434012.2_1_4:121263589-121263781:+|nuORF	REV__ENST00000434012.2_1_4:121263589-121263781:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.7684326171875	2	490.828778	979.643003	-0.034207	-1.679E-05	-0.21172	-0.00010392	-0.24592	-0.00012071	490.82858366357266	69.005	0.73481	65.515	65.362	66.096	-3.4902					21	14	2	0	0	0	0.027462	1	5128	5128		8.2313	0	1	74563	+		18835	17041	15364	15386	20873	20873					0.15236684759088348
IKNIFKYP	8	Unmodified	_IKNIFKYP_					0	0	0		tr|A0A7D6VQH9|A0A7D6VQH9_9CLOT4Fe-4SbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03305PE=4SV=1	tr|A0A7D6VQH9|A0A7D6VQH9_9CLOT4Fe-4SbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03305PE=4SV=1	tr|A0A7D6VQH9|A0A7D6VQH9_9CLOT4Fe-4SbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03305PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.2607421875	2	511.805303	1021.59605	0.09647	4.9374E-05	-2.188	-0.0011198	-2.0915	-0.0010704	512.3063634762398	56.755	0.40642	53.41	53.222	53.628	-3.3449					9	7	2	0	0	0	0.028476	1	3650	3650		31.955	3.7006	1	11574			18836	34850	15365	15387	20874	20874					0.08611825207935908
IKNKHTIAI	9	Unmodified	_IKNKHTIAI_					0	0	0			REV__ENST00000583772.1_1_17:73016361-73017097:+|nuORF	REV__ENST00000583772.1_1_17:73016361-73017097:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	519.3272705078125	2	519.326934	1036.63931	0.66301	0.00034432	0.14394	7.475E-05	0.80694	0.00041907	519.3265708894658	114.02	1.3609	112.96	112.68	114.04	-1.055					61	26	3	0	0	0	0.38529	1	8405	8405		53.351	3.9099	1	324950	+		18837	21313	15366	15388	20875	20875					0.12246014985225884
IKNLPIITYRR	11	Unmodified	_IKNLPIITYRR_					0	0	0			REV__nc|ENSG00000136824|O95347-2|SMC2	REV__nc|ENSG00000136824|O95347-2|SMC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	462.7624816894531	3	462.957511	1385.8507	2.095	0.00096989	0.21493	9.9505E-05	2.3099	0.0010694	462.95740396564986	77.395	0.41869	77.395	77.211	77.629	0					19	9	3	0	0	0	0.026302	1	7788	7788		12.433	7.2905	1	335830	+		18838	19406	15367	15389	20876	20876					0.17321266956309955
IKNLTASE	8	Unmodified	_IKNLTASE_					0	0	0		tr|A0A553SJU5|A0A553SJU5_NIACITyrosine--tRNAligaseOS=NialliacirculansOX=1397GN=tyrSPE=3SV=1	tr|A0A553SJU5|A0A553SJU5_NIACITyrosine--tRNAligaseOS=NialliacirculansOX=1397GN=tyrSPE=3SV=1	tr|A0A553SJU5|A0A553SJU5_NIACITyrosine--tRNAligaseOS=NialliacirculansOX=1397GN=tyrSPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	439.22808837890625	2	438.245275	874.475997	0.13249	5.8063E-05	1.477	0.00064729	1.6095	0.00070536	438.24577770274914	49.978	0.78598	49.978	49.679	50.465	0					28	17	2	0	0	0	0.028476	1	3788	3788		15.642	4.7763	1	622950			18839	33543	15368	15390	20877	20877					0.03373792143509036
IKNQQSIVVDI	11	Unmodified	_IKNQQSIVVDI_					0	0	0		tr|A0A7D6VV01|A0A7D6VV01_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22485PE=4SV=1	tr|A0A7D6VV01|A0A7D6VV01_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22485PE=4SV=1	tr|A0A7D6VV01|A0A7D6VV01_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22485PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	419.57763671875	3	419.578477	1255.7136	0.49155	0.00020624	-2.5803	-0.0010826	-2.0888	-0.0008764	419.5773464117968	36.315	1.4463	33.466	33.189	34.635	-2.849					82	28	4	0	0	0	0.71191	1	1244	1244		22.562	1.7244	1	381670			18840	35206	15369	15391	20878	20878					0.09597313286099052
IKNTYQVE	8	Unmodified	_IKNTYQVE_					0	0	0		tr|A0A553SNQ7|A0A553SNQ7_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_25010PE=4SV=1	tr|A0A553SNQ7|A0A553SNQ7_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_25010PE=4SV=1	tr|A0A553SNQ7|A0A553SNQ7_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_25010PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.2828369140625	2	497.763832	993.513111	-0.1754	-8.7309E-05	1.587	0.00078996	1.4116	0.00070265	497.76319625088894	30.679	0.24891	30.679	30.532	30.781	0					7	4	2	0	0	0	0.028476	1	1192	1192		32.812	3.6629	1	20043			18841	33946	15370	15392	20879	20879					0.01609463689283075
IKNYIPAVK	9	Unmodified	_IKNYIPAVK_					0	0	0		tr|A0A7D6VR59|A0A7D6VR59_9CLOTCarbohydratekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18105PE=4SV=1	tr|A0A7D6VR59|A0A7D6VR59_9CLOTCarbohydratekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18105PE=4SV=1	tr|A0A7D6VR59|A0A7D6VR59_9CLOTCarbohydratekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18105PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.3141479492188	2	523.32386	1044.63317	-1.7554	-0.00091864	1.3148	0.00068808	-0.44057	-0.00023056	523.3245473014936	124.97	1.396	123.57	122.82	124.21	-1.3908					35	26	2	0	0	0	0.027462	1	11787	11787		30.504	6.3009	1	22576			18842	34898	15371	15393	20880	20880					0.1126349675369056
IKNYIPPK	8	Unmodified	_IKNYIPPK_					0	0	0		ENST00000591146.2_1_19:1203272-1203464:+|nuORF	ENST00000591146.2_1_19:1203272-1203464:+|nuORF	ENST00000591146.2_1_19:1203272-1203464:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.2392578125	2	486.797478	971.580402	0.096516	4.6984E-05	-4.3492	-0.0021172	-4.2527	-0.0020702	486.79522569877196	52.804	0.9171	52.804	52.17	53.087	0					39	20	4	0	0	0	0.028476	1	4140	4140		31.955	9.995	1	1453800			18843	14115	15372	15394	20881	20881					0.09347538690894908
IKNYSLEIK	9	Unmodified	_IKNYSLEIK_					0	0	0			REV__ENSG00000240720|ENST00000458448|LRRD1	REV__ENSG00000240720|ENST00000458448|LRRD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.3228759765625	2	554.324057	1106.63356	-0.61833	-0.00034276	-0.076108	-4.2188E-05	-0.69444	-0.00038495	554.3239903378908	50.863	3.9984	47.689	47.412	51.41	-3.1734					211	78	5	0	0	0	0.26076	1	3023	3023		67.494	5.7291	1	3889100	+		18844	23440	15373	15395	20882	20882					0.08450871682885008
IKPETLLIM	9	Unmodified	_IKPETLLIM_					0	0	0		tr|A0A7D6ZJI4|A0A7D6ZJI4_9CLOTDeoR/GlpRtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08670PE=4SV=1	tr|A0A7D6ZJI4|A0A7D6ZJI4_9CLOTDeoR/GlpRtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08670PE=4SV=1	tr|A0A7D6ZJI4|A0A7D6ZJI4_9CLOTDeoR/GlpRtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08670PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.357177734375	2	529.319928	1056.6253	-0.88458	-0.00046823	3.4443	0.0018231	2.5597	0.0013549	529.321928682053	50.184	0.30136	50.184	50.031	50.332	0					11	6	2	0	0	0	0.027456	1	3808	3808		38.806	1.7777	1	151990			18845	35642	15374	15396	20883	20883					0.09925601441909748
IKPETVLVSI	10	Unmodified	_IKPETVLVSI_					0	0	0		tr|A0A553SN75|A0A553SN75_NIACIAminotransferaseclassV-foldPLP-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_23925PE=4SV=1	tr|A0A553SN75|A0A553SN75_NIACIAminotransferaseclassV-foldPLP-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_23925PE=4SV=1	tr|A0A553SN75|A0A553SN75_NIACIAminotransferaseclassV-foldPLP-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_23925PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.8651123046875	2	549.842082	1097.66961	-0.60196	-0.00033098	-2.3772	-0.0013071	-2.9792	-0.0016381	549.8406486977714	55.677	0.61459	55.677	55.358	55.973	0					23	14	2	0	0	0	0.026782	1	4596	4596		30.318	0	1	404840			18846	33907	15375	15397	20884	20884					0.12468328859768008
IKPFGPIIAM	10	Unmodified	_IKPFGPIIAM_					0	0	0			REV__tr|A0A7D6VPH1|A0A7D6VPH1_9CLOTFlagellarbiosynthesisproteinFlhAOS=ClostridiumintestinaleOX=36845GN=flhAPE=3SV=1	REV__tr|A0A7D6VPH1|A0A7D6VPH1_9CLOTFlagellarbiosynthesisproteinFlhAOS=ClostridiumintestinaleOX=36845GN=flhAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	543.8223876953125	2	543.822638	1085.63072	-0.88353	-0.00048048	-0.070215	-3.8185E-05	-0.95375	-0.00051867	543.8224620584012	28.215	0.59711	28.215	28.041	28.638	0					18	11	2	0	0	0	0.71192	1	911	911		29.15	0	1	439820	+		18847	31247	15376	15398	20885	20885					0.09133325024390615
IKPGLKNLNL	10	Unmodified	_IKPGLKNLNL_					0	0	0		ENSG00000139579|ENST00000267023|NABP2	ENSG00000139579|ENST00000267023|NABP2	ENSG00000139579|ENST00000267023|NABP2	MULTI-SECPEP	OvCa9_classI_Rep2	2	555.3253784179688	2	555.355691	1108.69683	-0.52337	-0.00029066	0.014258	7.9182E-06	-0.50911	-0.00028274	555.3556028832088	84.369	0.81219	82.822	82.588	83.4	-1.5462					36	15	3	0	0	0	0.027056	1	7272	7272		27.882	1.1893	1	82634			18848	4785	15377	15399	20886	20886					0.14682857190791765
IKPGQVLQI	9	Unmodified	_IKPGQVLQI_					0	0	0			REV__ENST00000454360.1_1_22:17053938-17054324:+|nuORF	REV__ENST00000454360.1_1_22:17053938-17054324:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.8373107910156	2	498.316035	994.617516	2.0821	0.0010376	-0.84579	-0.00042147	1.2363	0.00061609	498.31605210725786	113.09	0.40973	113.09	112.79	113.2	0					16	8	3	0	0	0	0.027441	1	12870	12870		58.782	14.665	1	127280	+		18849	26001	15378	15400	20887	20887					0.11999210236660929
IKPHEAVIV	9	Unmodified	_IKPHEAVIV_					0	0	0		tr|A0A7D6ZEX8|A0A7D6ZEX8_9CLOT2-oxoacid:ferredoxinoxidoreductasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=HZF06_15585PE=4SV=1	tr|A0A7D6ZEX8|A0A7D6ZEX8_9CLOT2-oxoacid:ferredoxinoxidoreductasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=HZF06_15585PE=4SV=1	tr|A0A7D6ZEX8|A0A7D6ZEX8_9CLOT2-oxoacid:ferredoxinoxidoreductasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=HZF06_15585PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	503.3096618652344	2	503.30821	1004.60187	2.0353	0.0010244	-0.12167	-6.1238E-05	1.9136	0.00096313	503.3080169446086	74.921	0.7336	74.921	74.635	75.369	0					43	17	3	0	0	0	0.50149	1	7435	7435		42.396	1.618	1	2025400			18850	35493	15379	15401	20888	20888					0.09974923719607887
IKPIYGATL	9	Unmodified	_IKPIYGATL_					0	0	0			REV__L1MA1_dup882|chr3:174894625-174897831:+|1.387705056550523|0.3345806313734131|2.05|429.0|32|1|sense	REV__L1MA1_dup882|chr3:174894625-174897831:+|1.387705056550523|0.3345806313734131|2.05|429.0|32|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.79449462890625	2	488.29731	974.580068	0.42331	0.0002067	-3.1196	-0.0015233	-2.6963	-0.0013166	488.2957113033628	45.609	0.60091	45.609	45.289	45.89	0					17	13	2	0	0	0	0.027462	1	3169	3169		27.882	3.6795	1	378650	+		18851	28378	15380	15402	20889	20889					0.0917611897103825
IKPLKKGIL	9	Unmodified	_IKPLKKGIL_					0	0	0		tr|A0A7D6ZTH5|A0A7D6ZTH5_9CLOTChemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11310PE=3SV=1	tr|A0A7D6ZTH5|A0A7D6ZTH5_9CLOTChemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11310PE=3SV=1	tr|A0A7D6ZTH5|A0A7D6ZTH5_9CLOTChemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11310PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.324951171875	2	505.360245	1008.70594	-0.065766	-3.3235E-05	-0.46502	-0.000235	-0.53079	-0.00026824	505.3594442161626	105.83	0.41534	104.48	104.2	104.61	-1.3482					10	7	2	0	0	0	0.027441	1	7420	7420		45.952	13.997	1	16700			18852	35753	15381	15403	20890	20890					0.2019325054714045
IKPRLIVEL	9	Unmodified	_IKPRLIVEL_					0	0	0			REV__ENSG00000077348|ENST00000221233|EXOSC5	REV__ENSG00000077348|ENST00000221233|EXOSC5	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.8262939453125	2	540.860609	1079.70667	2.0008	0.0010821	0.057828	3.1277E-05	2.0586	0.0011134	540.8604056877992	134.13	0.52431	134.13	133.72	134.24	0					18	10	2	0	0	0	0.027462	1	15562	15562		27.882	0	1	61879	+		18853	17011	15382	15404	20891	20891					0.17000045196186875
IKPRVHKPK	9	Unmodified	_IKPRVHKPK_					0	0	0			REV__ENSG00000132938|ENST00000612955|MTUS2	REV__ENSG00000132938|ENST00000612955|MTUS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.8488159179688	2	551.864018	1101.71348	1.9522	0.0010774	-2.6657	-0.0014711	-0.71342	-0.00039371	552.3646042324212	100.4	0.20732	100.4	100.24	100.44	0					5	4	2	0	0	0	0.027462	1	11118	11118		29.15	0	1	60389	+		18854	19115	15383	15405	20892	20892					0.16669402867387362
IKPSFFLLT	9	Unmodified	_IKPSFFLLT_					0	0	0		Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|34|1|sense	Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|34|1|sense	Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|34|1|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.3186645507812	2	533.320786	1064.62702	-2.1919	-0.001169	-2.6524	-0.0014146	-4.8444	-0.0025836	533.319370359341	72.331	1.5068	68.934	68.519	70.026	-3.3974					103	30	6	0	0	0	0.19758	1	5565	5565		76.774	2.5191	1	1205200			18855	14374	15384	15406	20893	20893					0.09728978522161924
IKQELHARR	9	Unmodified	_IKQELHARR_					0	0	0			REV__ENSG00000135090|ENST00000392533|TAOK3	REV__ENSG00000135090|ENST00000392533|TAOK3	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8426513671875	2	575.843813	1149.67307	-2.8608	-0.0016474	1.7444	0.0010045	-1.1164	-0.00064289	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.56889	1	14774	14774		35.618	6.4687	1	356230	+		18856	19256	15385	15407	20894	20894					0.10422436476960684
IKQELHARR	9	Unmodified	_IKQELHARR_					0	0	0			REV__ENSG00000135090|ENST00000392533|TAOK3	REV__ENSG00000135090|ENST00000392533|TAOK3	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8430786132812	2	575.843813	1149.67307	-4.018	-0.0023138	2.8816	0.0016594	-1.1364	-0.0006544	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.63422	1	12221	12221		27.882	3.6795	1	445630	+		18857	19256	15385	15407	20895	20895					0.10422436476960684
IKQGLGLSAV	10	Unmodified	_IKQGLGLSAV_					0	0	0		tr|A0A553SFB1|A0A553SFB1_NIACISugarphosphateisomerase/epimeraseOS=NialliacirculansOX=1397GN=CEQ21_08490PE=4SV=1	tr|A0A553SFB1|A0A553SFB1_NIACISugarphosphateisomerase/epimeraseOS=NialliacirculansOX=1397GN=CEQ21_08490PE=4SV=1	tr|A0A553SFB1|A0A553SFB1_NIACISugarphosphateisomerase/epimeraseOS=NialliacirculansOX=1397GN=CEQ21_08490PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.3033752441406	2	493.305667	984.596781	-1.1547	-0.00056961	0.70698	0.00034876	-0.4477	-0.00022085	493.3060168322791	106.96	2.167	105.09	104.45	106.61	-1.8785					87	42	4	0	0	0	0.48198	1	9768	9768		56.721	1.9564	1	513290			18858	33016	15386	15408	20896	20896					0.10386619857001733
IKQKMKIKL	9	Oxidation (M)	_IKQKM(Oxidation (M))KIKL_		IKQKM(1)KIKL		IKQKM(69)KIKL	0	0	1			REV__ENST00000494481.5_1_3:62319005-62319098:+|nuORF	REV__ENST00000494481.5_1_3:62319005-62319098:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	573.3749389648438	2	573.375569	1144.73659	1.2835	0.00073595	-3.0471	-0.0017471	-1.7635	-0.0010112	573.3736940622971	102.74	4.5051	102.74	102.17	106.67	0					254	104	3	0	0	0	0.24951	1	11430	11430		68.787	7.8149	1	5667200	+		18859	26727	15387	15409	20897	20897		596			0.17000660869848616
IKQKNDIHI	9	Unmodified	_IKQKNDIHI_					0	0	0		tr|A0A553SI49|A0A553SI49_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_14205PE=4SV=1	tr|A0A553SI49|A0A553SI49_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_14205PE=4SV=1	tr|A0A553SI49|A0A553SI49_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_14205PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	555.3013916015625	2	554.827298	1107.64004	-0.77715	-0.00043118	0.75218	0.00041733	-0.024966	-1.3852E-05	554.8274888619881	74.366	1.1325	71.956	71.499	72.631	-2.4106					54	22	4	0	0	0	0.027462	1	3639	3639		35.618	5.1146	1	83598			18860	33342	15388	15410	20898	20898					0.09052809634272307
IKQQLSPE	8	Unmodified	_IKQQLSPE_					0	0	0			REV__ENSG00000131951|ENST00000570145|LRRC9	REV__ENSG00000131951|ENST00000570145|LRRC9	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.7919616699219	2	471.766374	941.518196	2.7366	0.001291	3.8821	0.0018314	6.6186	0.0031224	471.7680237201452	88.769	0.72589	88.769	88.467	89.193	0					28	17	2	0	0	0	0.028476	1	9509	9509		53.351	0	1	2089800	+		18861	19044	15389	15411	20899	20899					0.045097675518945834
IKQRIGFV	8	Unmodified	_IKQRIGFV_					0	0	0		tr|A0A553SUD4|A0A553SUD4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06720PE=4SV=1	tr|A0A553SUD4|A0A553SUD4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06720PE=4SV=1	tr|A0A553SUD4|A0A553SUD4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06720PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	480.8009948730469	2	480.803094	959.591636	-3.5276	-0.0016961	-0.80978	-0.00038934	-4.3374	-0.0020854	480.80256125573777	150.83	1.6209	150.61	150.17	151.79	-0.22696					93	32	4	0	0	0	0.74971	1	15297	15297		26.796	1.3459	1	676150			18862	34597	15390	15412	20900	20900					0.11022360785045748
IKQRIGFV	8	Unmodified	_IKQRIGFV_					0	0	0		tr|A0A553SUD4|A0A553SUD4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06720PE=4SV=1	tr|A0A553SUD4|A0A553SUD4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06720PE=4SV=1	tr|A0A553SUD4|A0A553SUD4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06720PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	480.8005065917969	2	480.803094	959.591636	-4.4906	-0.0021591	0.15627	7.5133E-05	-4.3343	-0.002084	480.8030459689351	151.04	2.008	150.08	149.7	151.71	-0.95647					103	39	4	0	0	0	0.75991	1	12895	12895		21.702	0	1	1013500			18863	34597	15390	15412	20901	20901					0.11022360785045748
IKQRIGFV	8	Unmodified	_IKQRIGFV_					0	0	0		tr|A0A553SUD4|A0A553SUD4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06720PE=4SV=1	tr|A0A553SUD4|A0A553SUD4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06720PE=4SV=1	tr|A0A553SUD4|A0A553SUD4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06720PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.80157470703125	2	480.803094	959.591636	-3.2353	-0.0015556	-1.1249	-0.00054087	-4.3603	-0.0020964	480.80242897085384	151.49	1.9682	150.06	149.63	151.6	-1.4344					128	43	5	0	0	0	0.74679	1	15028	15028		28.254	1.4582	1	1260100			18864	34597	15390	15412	20902	20902					0.11022360785045748
IKQRRRPSSHT	11	Unmodified	_IKQRRRPSSHT_					0	0	0			REV__chr6:78868088-78885378|355|12.2|0.4|4.94|+|1|None,IRAK1BP1|1	REV__chr6:78868088-78885378|355|12.2|0.4|4.94|+|1|None,IRAK1BP1|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	455.92767333984375	3	455.932248	1364.77491	-5.5785	-0.0025434	-1.8678	-0.00085158	-7.4463	-0.003395	455.931132561883	158.64	0.92419	157.05	156.83	157.75	-1.5858					34	27	2	0	0	0	0.72507	1	15659	15659		14.694	0.60766	1	34655	+		18865	16082	15391	15413	20903	20903					0.10711682828741687
IKQSNVQIL	9	Unmodified	_IKQSNVQIL_					0	0	0		nc|ENSG00000100105|Q9HBE1-4|PATZ1;nc|ENSG00000100105|Q9HBE1-2|PATZ1;nc|ENSG00000100105|Q9HBE1-3|PATZ1;ENSG00000100105|ENST00000266269|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	nc|ENSG00000100105|Q9HBE1-4|PATZ1	MULTI-MSMS	OvCa9_classI_Rep2	2	521.815185546875	2	521.816399	1041.61824	0.45107	0.00023538	-0.20287	-0.00010586	0.2482	0.00012951	521.8161309836105	110.4	1.9235	110.23	109.86	111.78	-0.17237					90	38	4	0	0	0	0.28934	1	10409	10409		64.207	0	1	440840			18866	2009	15392	15414	20904	20904					0.09910004885705348
IKQWPFMVV	9	Unmodified	_IKQWPFMVV_					0	0	0		ENST00000508840.1_1_8:30095113-30095479:+|nuORF	ENST00000508840.1_1_8:30095113-30095479:+|nuORF	ENST00000508840.1_1_8:30095113-30095479:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.3458862304688	2	574.320263	1146.62597	1.9321	0.0011096	-3.7846	-0.0021736	-1.8525	-0.001064	574.3182015697838	78.297	0.57218	78.297	78.011	78.583	0					23	13	2	0	0	0	0.027462	1	7927	7927		42.474	15.782	1	505860			18867	12953	15393	15415	20905	20905					0.05852440881608345
IKQWPFMVV	9	Unmodified	_IKQWPFMVV_					0	0	0		ENST00000508840.1_1_8:30095113-30095479:+|nuORF	ENST00000508840.1_1_8:30095113-30095479:+|nuORF	ENST00000508840.1_1_8:30095113-30095479:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	574.320263	1146.62597	-0.50714	-0.00029126	-10.885	-0.0062517	-11.393	-0.006543	574.3138580362113	80.363	1.5953	78.668	78.074	79.67	-1.6951	0.25219	-0.00077841	NaN	33.516	69	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158550			18868	12953	15393	15415							0.05852440881608345
IKQWPFMVV	9	Unmodified	_IKQWPFMVV_					0	0	0		ENST00000508840.1_1_8:30095113-30095479:+|nuORF	ENST00000508840.1_1_8:30095113-30095479:+|nuORF	ENST00000508840.1_1_8:30095113-30095479:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	574.320263	1146.62597	-0.79204	-0.00045489	-10.583	-0.0060782	-11.375	-0.0065331	574.3140412632996	80.713	1.9323	78.391	77.979	79.912	-2.3226	-0.024768	-0.0004314	NaN	33.516	72	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	503480			18869	12953	15393	15415							0.05852440881608345
IKQWPFMVV	9	Unmodified	_IKQWPFMVV_					0	0	0		ENST00000508840.1_1_8:30095113-30095479:+|nuORF	ENST00000508840.1_1_8:30095113-30095479:+|nuORF	ENST00000508840.1_1_8:30095113-30095479:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	574.320263	1146.62597	-1.1583	-0.00066526	-10.254	-0.005889	-11.412	-0.0065542	574.3142490991418	81.017	1.3651	78.306	77.858	79.223	-2.7106	-0.10925	-5.2863E-05	NaN	33.516	62	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	485110			18870	12953	15393	15415							0.05852440881608345
IKRADPQQL	9	Unmodified	_IKRADPQQL_					0	0	0		nc|ENSG00000044459|Q9NXG0|CNTLN;ENSG00000044459|ENST00000380647|CNTLN;CNTLN|p.K1206Sfs*15|1|0.3|ENSG00000044459|chr9:17466063-17466063|A/-|frameshift_variant	nc|ENSG00000044459|Q9NXG0|CNTLN	nc|ENSG00000044459|Q9NXG0|CNTLN	MULTI-MSMS	OvCa9_classI_Rep2	2	534.8114624023438	2	534.811648	1067.60874	0.086004	4.5996E-05	-0.75568	-0.00040415	-0.66967	-0.00035815	534.8111784323548	91.527	2.091	90.291	89.795	91.886	-1.2355					103	38	4	0	0	0	0.064985	2	8123	8116;8123		110.12	8.4575	1	1349900			18871	1133	15394	15416	20906;20907	20907					0.07764236600155527
IKRADPQQL	9	Unmodified	_IKRADPQQL_					0	0	0		nc|ENSG00000044459|Q9NXG0|CNTLN;ENSG00000044459|ENST00000380647|CNTLN;CNTLN|p.K1206Sfs*15|1|0.3|ENSG00000044459|chr9:17466063-17466063|A/-|frameshift_variant	nc|ENSG00000044459|Q9NXG0|CNTLN	nc|ENSG00000044459|Q9NXG0|CNTLN	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.8132934570312	2	534.811648	1067.60874	-1.804	-0.0009648	0.81471	0.00043572	-0.98929	-0.00052909	534.8120810621485	92.846	1.3887	90.339	89.959	91.348	-2.5072					76	28	4	0	0	0	0.3076	1	8140	8140		62.107	1.9892	1	2073700			18872	1133	15394	15416	20908	20908					0.07764236600155527
IKRARISPK	9	Unmodified	_IKRARISPK_					0	0	0			REV__ENSG00000056097|ENST00000265069|ZFR	REV__ENSG00000056097|ENST00000265069|ZFR	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.8305053710938	2	534.85365	1067.69275	0.68188	0.00036471	-3.411	-0.0018244	-2.7291	-0.0014597	534.8523034178962	103.32	0.12303	103.32	103.26	103.39	0					4	2	2	0	0	0	0.027462	1	11542	11542		23.042	0	1	80986	+		18873	16715	15395	15417	20909	20909					0.1616081248773753
IKRCSMGET	9	Unmodified	_IKRCSMGET_					0	0	0			REV__ENST00000484537.2_1_1:1397881-1403907:+|nuORF	REV__ENST00000484537.2_1_1:1397881-1403907:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.8038024902344	2	512.749344	1023.48414	1.1319	0.00058036	-2.2229	-0.0011398	-1.091	-0.00055941	512.7479545273367	109.6	0.89371	109.6	109.24	110.13	0					27	19	2	0	0	0	0.027462	1	12410	12410		29.15	0	1	248840	+		18874	23323	15396	15418	20910	20910					-0.026667202030125736
IKRFAFWFKK	10	Unmodified	_IKRFAFWFKK_					0	0	0		tr|A0A553SSD5|A0A553SSD5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02925PE=4SV=1	tr|A0A553SSD5|A0A553SSD5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02925PE=4SV=1	tr|A0A553SSD5|A0A553SSD5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02925PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	457.6083984375	3	457.608042	1369.8023	-3.7463	-0.0017143	3.5762	0.0016365	-0.17009	-7.7836E-05	457.60971240856696	157.06	2.9403	156.83	155.39	158.33	-0.22696					220	89	3	0	0	0	0.79792	1	16015	16015		19.263	6.3052	1	46638			18875	34361	15397	15419	20911	20911					0.13218818107043262
IKRFGTFM	8	Unmodified	_IKRFGTFM_					0	0	0			REV__nc|ENSG00000151458|Q9ULJ7-2|ANKRD50	REV__nc|ENSG00000151458|Q9ULJ7-2|ANKRD50	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.3177185058594	2	500.275855	998.537157	-0.63072	-0.00031553	-1.0264	-0.00051349	-1.6571	-0.00082902	500.27554812847615	39.667	0.39664	36.712	36.616	37.012	-2.9541					10	7	2	0	0	0	0.028476	1	1660	1660		19.36	0	1	25278	+		18876	20233	15398	15420	20912	20912					0.037830256419624675
IKRFRNKQA	9	Unmodified	_IKRFRNKQA_					0	0	0		ENSG00000124177|ENST00000373233|CHD6;CHD6|p.A1178Dfs*18|1|0.01|ENSG00000124177|chr20:41451096-41451097|-/GT|frameshift_variant;CHD6|p.K1913Nfs*11|1|0.03|ENSG00000124177|chr20:41420896-41420897|-/TTGCCATGGCGATAGTA|frameshift_variant;nc|ENSG00000124177|Q8TD26-3|CHD6;ENST00000373222.3_1_20:40125942-40126167:-|nuORF;ENST00000470470.1_1_20:40125942-40143569:-|nuORF	ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	MULTI-SECPEP	OvCa9_classI_Rep3	3	580.8298950195312	2	580.854181	1159.69381	-1.6835	-0.00097785	-1.1113	-0.00064549	-2.7948	-0.0016233	580.8531889531216	75.881	0.20314	73.51	73.367	73.57	-2.3715					5	3	2	0	0	0	0.027462	1	3864	3864		37.159	0	1	14753			18877	3630	15399	15421	20913	20913					0.12035026856665354
IKRGDILV	8	Unmodified	_IKRGDILV_					0	0	0		tr|A0A7D6VSM9|A0A7D6VSM9_9CLOTSignalpeptidaseIOS=ClostridiumintestinaleOX=36845GN=lepBPE=3SV=1	tr|A0A7D6VSM9|A0A7D6VSM9_9CLOTSignalpeptidaseIOS=ClostridiumintestinaleOX=36845GN=lepBPE=3SV=1	tr|A0A7D6VSM9|A0A7D6VSM9_9CLOTSignalpeptidaseIOS=ClostridiumintestinaleOX=36845GN=lepBPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	457.2965087890625	2	457.295102	912.575651	3.0254	0.0013835	-0.46368	-0.00021204	2.5617	0.0011714	457.2947703530189	90.056	0.70543	90.056	89.641	90.346	0					41	16	3	0	0	0	0.45246	1	9648	9648		82.305	8.3303	1	1240000			18878	35038	15400	15422	20914	20914					0.11586654548125352
IKRKLSQV	8	Unmodified	_IKRKLSQV_					0	0	0			REV__DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	REV__DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.3050842285156	2	486.321651	970.62875	0.5669	0.0002757	1.4084	0.00068494	1.9753	0.00096064	486.32259881704283	124.91	0.39419	124.68	124.57	124.96	-0.2359					11	7	2	0	0	0	0.028476	1	12147	12147		47.916	29.591	1	14079	+		18879	16340	15401	15423	20915	20915					0.14226032330793714
IKRKPIELS	9	Unmodified	_IKRKPIELS_					0	0	0			REV__tr|A0A7D6VMP6|A0A7D6VMP6_9CLOTUvrABCsystemproteinAOS=ClostridiumintestinaleOX=36845GN=HZF06_12625PE=3SV=1	REV__tr|A0A7D6VMP6|A0A7D6VMP6_9CLOTUvrABCsystemproteinAOS=ClostridiumintestinaleOX=36845GN=HZF06_12625PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.7793579101562	2	542.347866	1082.68118	-1.7013	-0.00092268	1.1242	0.00060969	-0.57709	-0.00031298	542.3483840927896	101.85	0.49674	101.09	100.91	101.41	-0.76401					14	9	2	0	0	0	0.027462	1	9364	9364		44.117	9.9443	1	13662	+		18880	31142	15402	15424	20916	20916					0.143145706737414
IKRKRAAR	8	Unmodified	_IKRKRAAR_					0	0	0			REV__ENST00000520294.5_1_8:109476316-109498824:+|nuORF	REV__ENST00000520294.5_1_8:109476316-109498824:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.8169860839844	2	499.838334	997.662115	1.6134	0.00080642	1.0863	0.00054298	2.6997	0.0013494	500.3425845744887	108.93	0.17229	108.93	108.8	108.97	0					5	3	2	0	0	0	0.028476	1	12334	12334		52.299	13.493	1	43594	+		18881	27054	15403	15425	20917	20917					0.163190788933548
IKRKSSYLL	9	Unmodified	_IKRKSSYLL_					0	0	0			REV__ENST00000498792.1_1_3:120025975-120026458:+|nuORF	REV__ENST00000498792.1_1_3:120025975-120026458:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.78173828125	2	554.347866	1106.68118	0.82324	0.00045636	4.1841	0.0023195	5.0074	0.0027758	554.3497595321614	152.27	0.40387	152.27	152.12	152.52	0					11	8	2	0	0	0	0.027462	1	17863	17863		27.882	13.218	1	33260	+		18882	26800	15404	15426	20918	20918					0.13210570673754773
IKRLCTLALH	10	Unmodified	_IKRLCTLALH_					0	0	0		ENSG00000173145|ENST00000371361|NOC3L	ENSG00000173145|ENST00000371361|NOC3L	ENSG00000173145|ENST00000371361|NOC3L	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3560180664062	2	584.355168	1166.69578	-1.7162	-0.0010029	3.9032	0.0022809	2.187	0.001278	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.81289	1	14445	14445		17.365	0.89182	1	833330			18883	7352	15405	15427	20919	20919					0.1191031955024755
IKRLLDDL	8	Unmodified	_IKRLLDDL_					0	0	0		tr|A0A553SJ04|A0A553SJ04_NIACIPucRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_15830PE=3SV=1	tr|A0A553SJ04|A0A553SJ04_NIACIPucRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_15830PE=3SV=1	tr|A0A553SJ04|A0A553SJ04_NIACIPucRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_15830PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.3222351074219	2	493.305667	984.596781	0.4386	0.00021637	0.4371	0.00021562	0.8757	0.00043199	493.3059590382825	78.428	0.20011	76.688	76.512	76.712	-1.7398					6	3	2	0	0	0	0.028476	1	6555	6555		53.351	9.2347	1	68275			18884	33448	15406	15428	20920	20920					0.10386619857001733
IKRNKIVLD	9	Unmodified	_IKRNKIVLD_					0	0	0			REV__ENSG00000184828|ENST00000590800|ZBTB7C	REV__ENSG00000184828|ENST00000590800|ZBTB7C	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.302734375	2	549.853316	1097.69208	2.0024	0.001101	0.18758	0.00010314	2.19	0.0012042	549.8533279102269	113.63	1.1789	113.63	113.24	114.42	0					70	27	4	0	0	0	0.027441	1	12957	12957		45.952	15.448	1	2010800	+		18885	22452	15407	15429	20921	20921					0.14713973048037587
IKRQPLVI	8	Unmodified	_IKRQPLVI_					0	0	0		ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	OvCa9_classI_Rep2	2	483.826416015625	2	483.826569	965.638586	-0.14602	-7.0646E-05	-0.096711	-4.6791E-05	-0.24273	-0.00011744	483.8264345241618	72.943	1.2553	70.543	70.167	71.422	-2.3999					60	23	4	0	0	0	0.69415	1	5947	5947		44.531	0.41427	1	717880			18886	6011	15408	15430	20922	20922					0.1543922033616809
IKRQYIVDIL	10	Unmodified	_IKRQYIVDIL_					0	0	0		ENST00000320876.10_2_18:2688638-2694582:+|nuORF	ENST00000320876.10_2_18:2688638-2694582:+|nuORF	ENST00000320876.10_2_18:2688638-2694582:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	420.9278564453125	3	420.927329	1259.76016	-0.40847	-0.00017194	0.29792	0.0001254	-0.11055	-4.6533E-05	420.92744774972056	69.031	2.0508	66.41	66.118	68.168	-2.6203					127	40	5	0	0	0	0.48398	1	5471	5471		56.434	0	1	1205300			18887	10370	15409	15431	20923	20923					0.1406679790804901
IKRRTLLWK	9	Unmodified	_IKRRTLLWK_					0	0	0		ENSG00000163959|ENST00000296327|SLC51A	ENSG00000163959|ENST00000296327|SLC51A	ENSG00000163959|ENST00000296327|SLC51A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	405.5531311035156	3	405.267909	1212.7819	1.6411	0.00066508	-2.7636	-0.00112	-1.1225	-0.00045492	405.266744690567	47.9	1.3283	44.792	44.433	45.761	-3.1077					56	25	3	0	0	0	0.027462	1	2595	2595		8.2351	0	1	84236			18888	6388	15410	15432	20924	20924					0.18401647447262803
IKRRYQLL	8	Unmodified	_IKRRYQLL_					0	0	0		tr|A0A553SRN1|A0A553SRN1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01315PE=4SV=1	tr|A0A553SRN1|A0A553SRN1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01315PE=4SV=1	tr|A0A553SRN1|A0A553SRN1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01315PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	545.352783203125	2	545.3482	1088.68185	1.1555	0.00063013	4.3934	0.0023959	5.5488	0.003026	545.3506032401832	144.52	0.72827	144.52	144.21	144.94	0					27	14	3	0	0	0	0.7224	1	16897	16897		38.806	1.647	1	115210			18889	34278	15411	15433	20925	20925					0.14105410113461403
IKRSDVVI	8	Unmodified	_IKRSDVVI_					0	0	0			REV__tr|A0A553STU8|A0A553STU8_NIACIFour-carbonacidsugarkinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05650PE=3SV=1	REV__tr|A0A553STU8|A0A553STU8_NIACIFour-carbonacidsugarkinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05650PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.27001953125	2	465.292559	928.570566	3.2169	0.0014968	-1.3395	-0.00062328	1.8773	0.00087351	465.2918303260481	88.574	0.37604	88.574	88.384	88.76	0					13	8	2	0	0	0	0.028476	1	9422	9422		40.778	0	1	265910	+		18890	31014	15412	15434	20926	20926					0.10342350685516521
IKRSKSSIM	9	Unmodified	_IKRSKSSIM_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.2793579101562	2	525.310426	1048.6063	-2.6437	-0.0013888	3.0009	0.0015764	0.35715	0.00018761	525.8122451011367	49.83	0.36425	46.689	46.403	46.767	-3.1416					9	6	3	0	0	0	0.027462	1	2827	2827		24.519	5.1592	1	15352			18891	3286	15413	15435	20927	20927					0.08394064870867624
IKRSRTRSRSR	11	Unmodified	_IKRSRTRSRSR_					0	0	0			REV__ENST00000527399.3_1_12:122999727-123005058:-|nuORF	REV__ENST00000527399.3_1_12:122999727-123005058:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	468.69866943359375	3	468.286913	1401.83891	3.6688	0.001718	3.4464	0.0016139	7.1151	0.0033319	468.28870354643016	24.902	0.1281	22.192	22.105	22.233	-2.7097					7	4	2	0	0	0	0.026277	1	187	187		23.378	0.81632	1	9794	+		18892	27152	15414	15436	20928	20928					0.15406462985697544
IKRSTATP	8	Unmodified	_IKRSTATP_					0	0	0			REV__ENST00000370902.7_1_10:99196072-99196183:-|nuORF	REV__ENST00000370902.7_1_10:99196072-99196183:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	437.8759460449219	2	437.261259	872.507966	1.0272	0.00044914	-0.91919	-0.00040193	0.10798	4.7215E-05	437.2607214280161	64.828	0.52312	64.828	64.588	65.111	0					44	12	5	0	0	0	0.028476	1	5921	5921		17.365	0	1	1656700	+		18893	24970	15415	15437	20929	20929					0.06661204617319072
IKRVDRLHRS	10	Unmodified	_IKRVDRLHRS_					0	0	0			REV__KNTC1-FBXL12|1|fusion	REV__KNTC1-FBXL12|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	640.3912353515625	2	640.388919	1278.76329	-0.046057	-2.9495E-05	1.5614	0.0009999	1.5153	0.00097041	640.3896953409644	73.253	0.56572	73.253	72.994	73.56	0					39	13	4	0	0	0	0.73063	1	7189	7189		27.047	0.3544	1	1646700	+		18894	28342	15416	15438	20930	20930					0.13505485805399076
IKRVDRLHRS	10	Unmodified	_IKRVDRLHRS_					0	0	0			REV__KNTC1-FBXL12|1|fusion	REV__KNTC1-FBXL12|1|fusion	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	640.388919	1278.76329	-0.046057	-2.9495E-05	1.5614	0.0009999	1.5153	0.00097041	640.3896953409644	73.253	0.56572	73.253	72.994	73.56	0	0.09699	0.00087316	NaN	27.047	39	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1646700	+		18895	28342	15416	15438							0.13505485805399076
IKRVDRLHRS	10	Unmodified	_IKRVDRLHRS_					0	0	0			REV__KNTC1-FBXL12|1|fusion	REV__KNTC1-FBXL12|1|fusion	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	640.388919	1278.76329	0.32964	0.0002111	-0.27961	-0.00017906	0.050028	3.2037E-05	640.3885720729857	75.998	0.67135	73.059	72.741	73.412	-2.9389	-0.09699	-0.0014848	NaN	27.047	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97313	+		18896	28342	15416	15438							0.13505485805399076
IKRYTKVR	8	Unmodified	_IKRYTKVR_					0	0	0			REV__ENSG00000112367|ENST00000230124|FIG4	REV__ENSG00000112367|ENST00000230124|FIG4	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.3220825195312	2	532.340375	1062.6662	0.0021635	1.1517E-06	-1.3316	-0.00070885	-1.3294	-0.0007077	532.3398776354468	45.045	0.67245	45.045	44.573	45.245	0					20	14	2	0	0	0	0.028476	1	3052	3052		18.324	0	1	148140	+		18897	18097	15417	15439	20931	20931					0.13737123596411038
IKSDGIYR	8	Unmodified	_IKSDGIYR_					0	0	0			REV__ENST00000520124.5_1_8:22005675-22011752:-|nuORF	REV__ENST00000520124.5_1_8:22005675-22011752:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.7820739746094	2	476.266542	950.51853	-0.63039	-0.00030024	-0.02253	-1.073E-05	-0.65292	-0.00031097	476.2663294608629	42.914	0.99784	39.907	39.643	40.641	-3.0074					29	18	3	0	0	0	0.028476	1	2083	2083		34.173	0	1	86498	+		18898	21379	15418	15440	20932	20932					0.04129187271757928
IKSDIPSGDV	10	Unmodified	_IKSDIPSGDV_					0	0	0			REV__nc|ENSG00000150045|Q9NZS2-2|KLRF1	REV__nc|ENSG00000150045|Q9NZS2-2|KLRF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.8154907226562	2	515.774396	1029.53424	-0.75697	-0.00039043	0.87849	0.0004531	0.12151	6.2672E-05	515.774922929208	69.594	0.82126	69.594	69.268	70.089	0					40	19	3	0	0	0	0.026606	1	6628	6628		29.17	1.0886	1	1081900	+		18899	20182	15419	15441	20933	20933					0.02065428998139396
IKSEAASPAL	10	Unmodified	_IKSEAASPAL_					0	0	0		ENSG00000176692|ENST00000649859|FOXC2	ENSG00000176692|ENST00000649859|FOXC2	ENSG00000176692|ENST00000649859|FOXC2	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.7659606933594	2	493.779482	985.544411	0.39306	0.00019409	-1.5998	-0.00078995	-1.2067	-0.00059586	493.77839838807597	66.916	0.74364	64.255	63.85	64.594	-2.661					24	14	2	0	0	0	0.026493	1	5247	5247		70.816	24.844	1	28690			18900	7622	15420	15442	20934	20934					0.0510603672336174
IKSHFYHL	8	Unmodified	_IKSHFYHL_					0	0	0			REV__ENST00000324695.8_1_2:234890465-234891773:+|nuORF	REV__ENST00000324695.8_1_2:234890465-234891773:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	522.7822265625	2	522.784902	1043.55525	-1.0845	-0.00056694	-2.9079	-0.0015202	-3.9923	-0.0020871	522.7832029954586	59.287	1.3822	59.287	58.932	60.314	0					93	35	4	0	0	0	0.62934	1	5105	5105		57.811	1.0902	1	11864000	+		18901	24476	15421	15443	20935	20935					0.03521483888312105
IKSHFYHL	8	Unmodified	_IKSHFYHL_					0	0	0			REV__ENST00000324695.8_1_2:234890465-234891773:+|nuORF	REV__ENST00000324695.8_1_2:234890465-234891773:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.771240234375	2	522.784902	1043.55525	-1.0845	-0.00056694	-2.9079	-0.0015202	-3.9923	-0.0020871	522.7832029954586	59.287	1.3822	59.287	58.932	60.314	0					93	35	4	0	0	0	0.028476	1	5087	5087		47.916	0.25827	1	11864000	+		18902	24476	15421	15443	20936	20936					0.03521483888312105
IKSHPQLHI	9	Unmodified	_IKSHPQLHI_					0	0	0		tr|A0A553SM06|A0A553SM06_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21665PE=3SV=1	tr|A0A553SM06|A0A553SM06_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21665PE=3SV=1	tr|A0A553SM06|A0A553SM06_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21665PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.2603759765625	2	536.816733	1071.61891	-2.2347	-0.0011996	3.8425	0.0020627	1.6078	0.0008631	536.8188339082018	87.54	1.1048	84.913	84.399	85.503	-2.6269					30	21	2	0	0	0	0.027462	1	7420	7420		27.882	4.8398	1	22703			18903	33779	15422	15444	20937	20937					0.08596844325415987
IKSIASGLSR	10	Unmodified	_IKSIASGLSR_					0	0	0			REV__nc|ENSG00000163749|Q5M9N0-3|CCDC158	REV__nc|ENSG00000163749|Q5M9N0-3|CCDC158	MULTI-MSMS	OvCa9_classI_Rep2	2	516.3137817382812	2	516.314023	1030.61349	-4.2539	-0.0021964	4.0398	0.0020858	-0.21417	-0.00011058	516.3160035152533	156.4	1.1562	156.18	155.89	157.05	-0.22696					77	28	5	0	0	0	0.71173	1	15936	15936		29.17	4.6509	1	397210	+		18904	20882	15423	15445	20938	20938					0.09941120742928433
IKSIDCNALIL	11	Unmodified	_IKSIDCNALIL_					0	0	0			REV__ENSG00000182752|ENST00000328252|PAPPA	REV__ENSG00000182752|ENST00000328252|PAPPA	MULTI-MSMS	OvCa9_classI_Rep2	2	602.3484497070312	2	601.844299	1201.67404	2.163	0.0013018	1.0105	0.00060817	3.1735	0.0019099	601.8447506890049	27.076	0.48663	24.366	24.219	24.706	-2.7097					19	12	2	0	0	0	0.72491	1	430	430		16.717	8.4823	1	17820	+		18905	22315	15424	15446	20939	20939					0.08127470011027071
IKSIEVVMN	9	Unmodified	_IKSIEVVMN_					0	0	0			REV__tr|A0A7D6VPU8|A0A7D6VPU8_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20450PE=4SV=1	REV__tr|A0A7D6VPU8|A0A7D6VPU8_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20450PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7936401367188	2	516.791535	1031.56852	-0.66466	-0.00034349	-2.5633	-0.0013247	-3.228	-0.0016682	517.2914282984254	55.91	0.41219	55.91	55.723	56.135	0					15	9	2	0	0	0	0.027462	1	4592	4592		29.15	0	1	163070	+		18906	31279	15425	15447	20940	20940					0.05399553885399655
IKSIKEVR	8	Unmodified	_IKSIKEVR_					0	0	0		nc|ENSG00000154822|Q9UPR0-2|PLCL2;nc|ENSG00000154822|Q9UPR0-3|PLCL2;ENSG00000154822|ENST00000615277|PLCL2;ENST00000460467.1_1_3:17051216-17052412:+|nuORF	nc|ENSG00000154822|Q9UPR0-2|PLCL2	nc|ENSG00000154822|Q9UPR0-2|PLCL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.79376220703125	2	486.813659	971.612765	-0.45777	-0.00022285	0.38337	0.00018663	-0.074397	-3.6218E-05	486.8136251427943	53.934	0.31548	53.934	53.774	54.089	0					14	7	2	0	0	0	0.028476	1	4337	4337		30.504	8.5438	1	163250			18907	5756	15426	15448	20941	20941					0.12582326093888696
IKSKANIIV	9	Unmodified	_IKSKANIIV_					0	0	0		tr|A0A7D6VN89|A0A7D6VN89_9CLOTMinD/ParAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16785PE=4SV=1	tr|A0A7D6VN89|A0A7D6VN89_9CLOTMinD/ParAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16785PE=4SV=1	tr|A0A7D6VN89|A0A7D6VN89_9CLOTMinD/ParAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16785PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	493.32391357421875	2	493.32386	984.633166	0.54027	0.00026653	-1.8183	-0.000897	-1.278	-0.00063047	493.3229865794195	78.475	7.726	76.735	75.777	83.503	-1.7398					408	152	5	0	0	0	0.053172	1	6678	6678		116.9	8.8161	1	9096900			18908	34684	15427	15449	20942	20942					0.14023496753702602
IKSLNLLGNVI	11	Unmodified	_IKSLNLLGNVI_					0	0	0		tr|A0A553SJT2|A0A553SJT2_NIACID-alanineaminotransferaseOS=NialliacirculansOX=1397GN=datPE=4SV=1	tr|A0A553SJT2|A0A553SJT2_NIACID-alanineaminotransferaseOS=NialliacirculansOX=1397GN=datPE=4SV=1	tr|A0A553SJT2|A0A553SJT2_NIACID-alanineaminotransferaseOS=NialliacirculansOX=1397GN=datPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	592.3721313476562	2	592.374081	1182.73361	-5.9356	-0.0035161	2.4575	0.0014558	-3.4781	-0.0020603	592.375440751458	154.93	1.0911	153.86	153.56	154.65	-1.0721					63	26	4	0	0	0	0.72466	1	13316	13316		19.997	0.89325	1	79410			18909	33541	15428	15450	20943	20943					0.14955109016705137
IKSMITLNV	9	Unmodified	_IKSMITLNV_					0	0	0			REV__ENST00000397222.2_1_X:45918520-45918886:-|nuORF	REV__ENST00000397222.2_1_X:45918520-45918886:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	509.80328369140625	2	509.801903	1017.58925	-0.41042	-0.00020923	4.0745	0.0020772	3.6641	0.001868	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.69123	1	13752	13752		20.947	2.6225	1	150140	+		18910	25348	15429	15451	20944	20944					0.08116144265068215
IKSQPGHVE	9	Unmodified	_IKSQPGHVE_					0	0	0		ENSG00000176383|ENST00000324189|B3GNT4;nc|ENSG00000176383|Q9C0J1-2|B3GNT4;B3GNT4|p.R133Q|1|0.3|ENSG00000176383|chr12:122206649-122206649|G/A|missense_variant	ENSG00000176383|ENST00000324189|B3GNT4	ENSG00000176383|ENST00000324189|B3GNT4	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.7829895019531	2	497.769448	993.524344	-0.84199	-0.00041912	1.0282	0.00051181	0.18621	9.2691E-05	497.7699003932729	65.51	0.44333	65.51	65.347	65.79	0					18	10	3	0	0	0	0.027455	1	6059	6059		42.396	0	1	472090			18911	7602	15430	15452	20945	20945					0.027322857834292336
IKSRRFFEK	9	Unmodified	_IKSRRFFEK_					0	0	0			REV__ENSG00000152578|ENST00000282499|GRIA4;REV__nc|ENSG00000125675|P42263|GRIA3	REV__ENSG00000152578|ENST00000282499|GRIA4	MULTI-MSMS	OvCa99_classI_Rep5	1	605.852783203125	2	605.85639	1209.69823	2.024	0.0012263	-0.54422	-0.00032972	1.4798	0.00089654	605.8559671641736	134.59	1.397	134.59	134.29	135.69	0					68	30	3	0	0	0	0.67104	1	15735	15735		23.523	1.5628	1	3282600	+		18912	20293;18737	15431	15453	20946	20946					0.10176491279548827
IKSSSTINSSL	11	Unmodified	_IKSSSTINSSL_					0	0	0			REV__nc|ENSG00000144837|Q53H76-4|PLA1A	REV__nc|ENSG00000144837|Q53H76-4|PLA1A	MULTI-MSMS	OvCa9_classI_Rep4_	4	568.8101806640625	2	568.81151	1135.60847	-1.5482	-0.00088062	-4.0722	-0.0023163	-5.6204	-0.0031969	568.8090746560646	126.65	0.79337	125.24	124.97	125.76	-1.4143					35	15	3	0	0	0	0.69735	1	12084	12084		30.569	2.6866	1	62582	+		18913	19939	15432	15454	20947	20947					0.04608772089682134
IKSVARKKE	9	Unmodified	_IKSVARKKE_					0	0	0			REV__tr|A0A7D7AE40|A0A7D7AE40_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01385PE=4SV=1	REV__tr|A0A7D7AE40|A0A7D7AE40_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01385PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8098754882812	2	529.837665	1057.66078	-0.49958	-0.0002647	0.28642	0.00015175	-0.21316	-0.00011294	529.837542150975	104.61	0.55163	104.61	104.41	104.96	0					13	12	2	0	0	0	0.027461	1	11764	11764		40.778	5.1599	1	444500	+		18914	32701	15433	15455	20948	20948					0.13425400013920807
IKSYPLQDF	9	Unmodified	_IKSYPLQDF_					0	0	0		nc|ENSG00000149646|Q96M20-3|CNBD2;nc|ENSG00000149646|Q96M20-2|CNBD2;ENSG00000149646|ENST00000373973|CNBD2;EPB41L1-C20orf152|8|fusion;EPB41L1-C20orf152|2|fusion;EPB41L1-C20orf152|10|fusion;EPB41L1-C20orf152|7|fusion;EPB41L1-C20orf152|1|fusion;EPB41L1-C20orf152|12|fusion;EPB41L1-C20orf152|6|fusion;EPB41L1-C20orf152|4|fusion;EPB41L1-C20orf152|9|fusion;EPB41L1-C20orf152|11|fusion;EPB41L1-C20orf152|5|fusion;EPB41L1-C20orf152|3|fusion	nc|ENSG00000149646|Q96M20-3|CNBD2	nc|ENSG00000149646|Q96M20-3|CNBD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.2691040039062	2	555.795132	1109.57571	0.94502	0.00052524	2.0899	0.0011615	3.0349	0.0016868	555.7960955794255	132.25	0.56499	132.25	132.04	132.6	0					17	11	2	0	0	0	0.027459	1	15359	15359		52.937	10.072	1	82408			18915	5484	15434	15456	20949	20949					0.025306097574684827
IKTAKFIKR	9	Unmodified	_IKTAKFIKR_					0	0	0		tr|A0A7D6VS24|A0A7D6VS24_9CLOTSugarfermentationstimulationproteinhomologOS=ClostridiumintestinaleOX=36845GN=sfsAPE=3SV=1	tr|A0A7D6VS24|A0A7D6VS24_9CLOTSugarfermentationstimulationproteinhomologOS=ClostridiumintestinaleOX=36845GN=sfsAPE=3SV=1	tr|A0A7D6VS24|A0A7D6VS24_9CLOTSugarfermentationstimulationproteinhomologOS=ClostridiumintestinaleOX=36845GN=sfsAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.8311157226562	2	552.866226	1103.7179	2.0929	0.0011571	2.6831	0.0014834	4.776	0.0026405	552.8695325335409	77.313	0.41634	77.313	77.085	77.501	0					12	9	2	0	0	0	0.027462	1	7780	7780		17.365	0.89182	1	168130			18916	34979	15435	15457	20950	20950					0.170188672903123
IKTALAPVDPV	11	Unmodified	_IKTALAPVDPV_					0	0	0			REV__ENST00000442385.5_1_1:16542430-16543645:-|nuORF	REV__ENST00000442385.5_1_1:16542430-16543645:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3447265625	2	562.339707	1122.66486	2.5554	0.001437	3.9669	0.0022307	6.5223	0.0036677	562.341833951132	139.43	3.4203	137.93	136.47	139.89	-1.4952					166	69	3	0	0	0	0.72473	1	13566	13566		19.104	2.3861	1	141360	+		18917	25855	15436	15458	20951	20951					0.10843444716965678
IKTASPVAFR	10	Unmodified	_IKTASPVAFR_					0	0	0			REV__chr12:6333499-6334091|93|16.61|0.0|11.86|-|0|None,TNFRSF1A|1	REV__chr12:6333499-6334091|93|16.61|0.0|11.86|-|0|None,TNFRSF1A|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	546.2984008789062	2	545.324391	1088.63423	0.25567	0.00013942	-1.7558	-0.0009575	-1.5002	-0.00081808	545.3230160148535	71.78	0.52216	69.273	68.963	69.485	-2.5071					15	9	2	0	0	0	0.02706	1	5809	5809		37.812	21.338	1	47585	+		18918	15886	15437	15459	20952	20952					0.09345711122591638
IKTAVAYF	8	Unmodified	_IKTAVAYF_					0	0	0			REV__nc|ENSG00000184988|Q96A25-2|TMEM106A	REV__nc|ENSG00000184988|Q96A25-2|TMEM106A	MULTI-SECPEP	OvCa9_classI_Rep2	2	456.7796325683594	2	456.763104	911.511654	1.3364	0.00061044	2.7833	0.0012713	4.1197	0.0018817	456.7645507990266	79.736	0.81252	78.04	77.557	78.37	-1.6951					17	15	2	0	0	0	0.028476	1	6705	6705		20.482	1.1219	1	25179	+		18919	22466	15438	15460	20953	20953					0.05235874391178186
IKTEHSLLHLS	11	Unmodified	_IKTEHSLLHLS_					0	0	0			REV__ENST00000496181.1_1_6:167435938-167438429:+|nuORF	REV__ENST00000496181.1_1_6:167435938-167438429:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	639.3651123046875	2	639.364244	1276.71394	-4.0344	-0.0025795	2.2611	0.0014457	-1.7733	-0.0011338	639.3655564998056	154.53	1.1695	153.08	152.77	153.94	-1.4516					91	28	4	0	0	0	0.72479	1	15359	15359		18.262	3.3972	1	586460	+		18920	23254	15439	15461	20954	20954					0.08664733005957714
IKTESAPPTI	10	Unmodified	_IKTESAPPTI_					0	0	0			REV__ENSG00000143476|ENST00000366991|DTL	REV__ENSG00000143476|ENST00000366991|DTL	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.7991943359375	2	528.800414	1055.58628	-0.0032197	-1.7026E-06	-2.7589	-0.0014589	-2.7621	-0.0014606	528.7987506023868	37.509	1.5397	34.616	34.392	35.932	-2.8925					53	30	3	0	0	0	0.58067	1	1395	1395		44.377	6.5657	1	302020	+		18921	19844	15440	15462	20955	20955					0.06070592411901998
IKTGPARR	8	Unmodified	_IKTGPARR_					0	0	0		nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4;ENSG00000069020|ENST00000403625|MAST4	nc|ENSG00000069020|O15021-2|MAST4	nc|ENSG00000069020|O15021-2|MAST4	MULTI-MSMS	OvCa9_classI_Rep2	2	449.7820129394531	2	449.782693	897.550834	3.5421	0.0015932	-3.788	-0.0017038	-0.2459	-0.0001106	449.78082442594376	30.033	0.64199	27.324	27.162	27.804	-2.7097					18	12	2	0	0	0	0.76021	1	785	785		20.947	1.587	1	30369			18922	1403	15441	15463	20956	20956					0.09796019465409245
IKTKTGVV	8	Unmodified	_IKTKTGVV_					0	0	0			REV__tr|A0A7D6VZL8|A0A7D6VZL8_9CLOTPilusassemblyproteinPilMOS=ClostridiumintestinaleOX=36845GN=pilMPE=4SV=1	REV__tr|A0A7D6VZL8|A0A7D6VZL8_9CLOTPilusassemblyproteinPilMOS=ClostridiumintestinaleOX=36845GN=pilMPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	423.2747802734375	2	423.276378	844.538203	-1.0746	-0.00045487	-1.9263	-0.00081535	-3.0009	-0.0012702	423.27545611036373	140.26	1.6211	140.03	139.45	141.07	-0.22696					84	32	4	0	0	0	0.75991	1	14044	14044		21.702	7.0382	1	166850	+		18923	31840	15442	15464	20957	20957					0.1097156328253277
IKTLGKVVK	9	Unmodified	_IKTLGKVVK_					0	0	0			REV__ENSG00000164151|ENST00000296564|ICE1	REV__ENSG00000164151|ENST00000296564|ICE1	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.3226013183594	2	493.342052	984.669552	0.41768	0.00020606	-3.1769	-0.0015673	-2.7593	-0.0013613	493.3405041202273	78.38	0.15247	76.64	76.512	76.664	-1.7398					4	2	2	0	0	0	0.027462	1	6543	6543		42.396	11.892	1	12561	+		18924	20949	15443	15465	20958	20958					0.1766037365041484
IKTLTKNIN	9	Unmodified	_IKTLTKNIN_					0	0	0			REV__ENSG00000162618|ENST00000370742|ADGRL4	REV__ENSG00000162618|ENST00000370742|ADGRL4	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.3080444335938	2	522.824224	1043.63389	-0.17964	-9.3918E-05	-0.43327	-0.00022652	-0.6129	-0.00032044	522.8238347793875	45.267	0.47221	45.267	45.068	45.54	0					17	10	2	0	0	0	0.027462	1	3143	3143		34.173	1.3601	1	387250	+		18925	20755	15444	15466	20959	20959					0.11382291402765077
IKTNNKLR	8	Unmodified	_IKTNNKLR_					0	0	0			REV__tr|A0A7D6VNL5|A0A7D6VNL5_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13405PE=4SV=1	REV__tr|A0A7D6VNL5|A0A7D6VNL5_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13405PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.80859375	2	493.808908	985.603263	0.72189	0.00035648	-1.0814	-0.00053399	-0.35948	-0.00017751	493.8082033689365	31.126	0.76694	28.595	28.34	29.107	-2.5308					53	29	3	0	0	0	0.75426	1	678	678		18.324	1.8513	1	34842	+		18926	31191	15445	15467	20960	20960					0.10988557808366295
IKTRQVGY	8	Unmodified	_IKTRQVGY_					0	0	0			REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	482.2630310058594	2	482.782359	963.550165	0.044702	2.1582E-05	-0.65628	-0.00031684	-0.61158	-0.00029526	482.7816759346219	56.541	1.0667	53.247	53.07	54.137	-3.2944					22	20	2	0	0	0	0.028476	1	3716	3716		30.504	5.0535	1	33891	+		18927	19252	15446	15468	20961	20961					0.06693180025706624
IKTRQVGY	8	Unmodified	_IKTRQVGY_					0	0	0			REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	482.782359	963.550165	-1.0843	-0.00052347	1.3727	0.00066271	0.28842	0.00013924	482.78250093665275	56.054	0.49527	53.25	52.928	53.424	-2.804	0.0014961	0.001444	NaN	16.473	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10464	+		18928	19252	15446	15468							0.06693180025706624
IKTSRFTIEK	10	Unmodified	_IKTSRFTIEK_					0	0	0			REV__tr|A0A7D6VRB1|A0A7D6VRB1_9CLOTMechanosensitiveionchannelfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00835PE=3SV=1	REV__tr|A0A7D6VRB1|A0A7D6VRB1_9CLOTMechanosensitiveionchannelfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00835PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	408.7319030761719	3	408.243317	1221.70812	-0.022331	-9.1163E-06	1.2107	0.00049427	1.1884	0.00048515	408.2437967503831	50.474	1.0909	47.68	47.331	48.422	-2.794					35	21	3	0	0	0	0.027325	1	3295	3295		16.007	0	1	27594	+		18929	31401	15447	15469	20962	20962					0.10613634494256985
IKTSSTVLVE	10	Unmodified	_IKTSSTVLVE_					0	0	0			REV__nc|ENSG00000236790|Q6ZSB3|LINC00299	REV__nc|ENSG00000236790|Q6ZSB3|LINC00299	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.778564453125	2	538.813522	1075.61249	-1.1256	-0.00060649	2.0563	0.001108	0.9307	0.00050147	538.8143146390912	74.284	0.8168	71.053	70.861	71.678	-3.2308					24	16	2	0	0	0	0.02663	1	5812	5812		69.628	6.3214	1	42432	+		18930	29153	15448	15470	20963	20963					0.0777086158336715
IKTSSTVLVE	10	Unmodified	_IKTSSTVLVE_					0	0	0			REV__nc|ENSG00000236790|Q6ZSB3|LINC00299	REV__nc|ENSG00000236790|Q6ZSB3|LINC00299	MULTI-MATCH	OvCa9_classI_Rep3	3		2	538.813522	1075.61249	0.76333	0.00041129	-0.1916	-0.00010324	0.57173	0.00030806	538.8132637462035	73.671	0.4478	71.183	70.974	71.422	-2.4873	0.065119	-0.0010071	NaN	69.628	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20128	+		18931	29153	15448	15470							0.0777086158336715
IKVIMDIVV	9	Unmodified	_IKVIMDIVV_					0	0	0		tr|A0A553SFB8|A0A553SFB8_NIACIalpha,alpha-phosphotrehalaseOS=NialliacirculansOX=1397GN=treCPE=3SV=1	tr|A0A553SFB8|A0A553SFB8_NIACIalpha,alpha-phosphotrehalaseOS=NialliacirculansOX=1397GN=treCPE=3SV=1	tr|A0A553SFB8|A0A553SFB8_NIACIalpha,alpha-phosphotrehalaseOS=NialliacirculansOX=1397GN=treCPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7858276367188	2	515.322471	1028.63039	-0.64979	-0.00033485	-1.6383	-0.00084425	-2.2881	-0.0011791	515.3216710877404	48.299	0.29691	48.299	48.204	48.501	0					10	6	2	0	0	0	0.027462	1	3554	3554		37.159	1.5408	1	247130			18932	33020	15449	15471	20964	20964					0.1172190530453463
IKVLCLAQWLP	11	Unmodified	_IKVLCLAQWLP_					0	0	0		nc|ENSG00000130005|Q14353-2|GAMT	nc|ENSG00000130005|Q14353-2|GAMT	nc|ENSG00000130005|Q14353-2|GAMT	MULTI-SECPEP	OvCa99_classI_Rep5	1	641.64404296875	2	642.380852	1282.74715	1.1783	0.0007569	3.1678	0.0020349	4.346	0.0027918	642.3828868647818	153.56	2.0274	153.56	153.2	155.22	0					57	40	3	0	0	0	0.025551	1	18120	18120		20.947	0	1	133810			18933	15009	15450	15472	20965	20965					0.11708643524298168
IKVLDNQIKKD	11	Unmodified	_IKVLDNQIKKD_					0	0	0		nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT;nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF	nc|ENSG00000122966|O14578|CIT	nc|ENSG00000122966|O14578|CIT	MULTI-SECPEP	OvCa9_classI_Rep4_	4	438.25091552734375	3	438.59776	1312.77145	-0.70153	-0.00030769	-1.9009	-0.00083372	-2.6024	-0.0011414	438.59697033654777	40.711	0.5729	37.757	37.632	38.205	-2.9541					21	10	3	0	0	0	0.025445	1	1766	1766		17.167	0.63689	1	30927			18934	3566	15451	15473	20966	20966					0.12757575211480798
IKVMDPLIS	9	Unmodified	_IKVMDPLIS_					0	0	0			REV__nc|ENSG00000227345|Q86W56-5|PARG	REV__nc|ENSG00000227345|Q86W56-5|PARG	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.936767578125	2	508.296453	1014.57835	0.18313	9.3086E-05	-0.72487	-0.00036845	-0.54174	-0.00027536	508.29498520186587	73.724	0.23116	73.724	73.597	73.829	0					6	5	2	0	0	0	0.027441	1	7246	7246		49.442	0	1	198070	+		18935	23375	15452	15474	20967	20967					0.07164741890778714
IKVNVPLAAL	10	Unmodified	_IKVNVPLAAL_					0	0	0			REV__ENST00000504778.5_1_5:54552318-54579000:-|nuORF	REV__ENST00000504778.5_1_5:54552318-54579000:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.7921142578125	2	519.33951	1036.66447	-0.35088	-0.00018223	-0.62413	-0.00032414	-0.97501	-0.00050636	519.339375364166	122.01	0.41797	120.66	120.46	120.88	-1.3479					13	7	2	0	0	0	0.026752	1	11497	11497		53.351	9.2347	1	17680	+		18936	16293	15453	15475	20968	20968					0.14760069787803332
IKVQPVHEL	9	Unmodified	_IKVQPVHEL_					0	0	0			REV__ENSG00000163885|ENST00000352312|CFAP100	REV__ENSG00000163885|ENST00000352312|CFAP100	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8181762695312	2	531.818941	1061.62333	0.089047	4.7357E-05	-3.7428	-0.0019905	-3.6538	-0.0019431	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.51865	1	13529	13529		40.778	2.9666	1	263230	+		18937	20907	15454	15476	20969	20969					0.09498308748334239
IKVQRVCH	8	Unmodified	_IKVQRVCH_					0	0	0		ENST00000545266.1_1_1:160309677-160309767:-|nuORF	ENST00000545266.1_1_1:160309677-160309767:-|nuORF	ENST00000545266.1_1_1:160309677-160309767:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	491.7867126464844	2	491.784379	981.554204	3.7555	0.0018469	-0.45585	-0.00022418	3.2997	0.0016227	491.78412902476117	26.103	0.75454	23.393	23.207	23.961	-2.7097					24	17	2	0	0	0	0.75991	1	323	323		21.702	0.7554	1	45243			18938	13521	15455	15477	20970	20970					0.06268946247769236
IKVREESTK	9	Unmodified	_IKVREESTK_					0	0	0			REV__tr|A0A7D6ZVD1|A0A7D6ZVD1_9CLOTABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03545PE=3SV=1	REV__tr|A0A7D6ZVD1|A0A7D6ZVD1_9CLOTABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03545PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3163452148438	2	545.316763	1088.61897	-2.8527	-0.0015556	2.7212	0.0014839	-0.13151	-7.1714E-05	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.68424	1	12012	12012		21.96	1.013	1	337600	+		18939	32247	15456	15478	20971	20971					0.07820799534761136
IKVRVAENN	9	Unmodified	_IKVRVAENN_					0	0	0			REV__nc|ENSG00000133863|Q9BXT5|TEX15	REV__nc|ENSG00000133863|Q9BXT5|TEX15	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.778076171875	2	521.803823	1041.59309	1.6824	0.00087787	1.5761	0.00082241	3.2585	0.0017003	521.8046639422016	86.003	0.60752	86.003	85.585	86.192	0					25	14	2	0	0	0	0.027462	1	9054	9054		39.253	0	1	744670	+		18940	19162	15457	15479	20972	20972					0.073959500831279
IKVTGKVA	8	Unmodified	_IKVTGKVA_					0	0	0			REV__nc|ENSG00000088836|Q8NBS3-5|SLC4A11	REV__nc|ENSG00000088836|Q8NBS3-5|SLC4A11	MULTI-SECPEP	OvCa9_classI_Rep4_	4	408.7315673828125	2	408.271096	814.527639	0.23014	9.3959E-05	-0.32471	-0.00013257	-0.094568	-3.8609E-05	408.270899741572	51.008	0.70572	47.834	47.568	48.274	-3.1734					22	13	2	0	0	0	0.028476	1	2969	2969		12.207	0	1	51742	+		18941	17183	15458	15480	20973	20973					0.11295580628075186
IKVVKLLVR	9	Unmodified	_IKVVKLLVR_					0	0	0		ENSG00000166801|ENST00000675163|FAM111A	ENSG00000166801|ENST00000675163|FAM111A	ENSG00000166801|ENST00000675163|FAM111A	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.3069458007812	2	534.386794	1066.75904	0.17068	9.1208E-05	1.7301	0.00092452	1.9007	0.0010157	534.3868345863419	70.704	0.43048	70.704	70.447	70.877	0					18	10	3	0	0	0	0.027462	1	6814	6814		11.511	3.2797	1	371400			18942	6714	15459	15481	20974	20974					0.22832628329797444
IKVVLLENE	9	Unmodified	_IKVVLLENE_					0	0	0			REV__ENSG00000110975|ENST00000228567|SYT10	REV__ENSG00000110975|ENST00000228567|SYT10	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.818603515625	2	528.818607	1055.62266	-0.58431	-0.00030899	-0.14688	-7.7671E-05	-0.73119	-0.00038667	528.8184384605206	115.69	2.5492	114.29	113.92	116.47	-1.3977					103	49	4	0	0	0	0.66262	1	10835	10835		24.519	0	1	813440	+		18943	18013	15460	15482	20975	20975					0.09707469308614236
IKWAKEPVR	9	Unmodified	_IKWAKEPVR_					0	0	0			REV__ENST00000519256.5_1_5:170585477-170669877:+|nuORF	REV__ENST00000519256.5_1_5:170585477-170669877:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	563.7921142578125	2	563.840208	1125.66586	-1.4047	-0.00079204	-2.4992	-0.0014091	-3.9039	-0.0022012	563.8385740930864	63.266	1.2097	60.522	60.056	61.266	-2.7444					49	22	3	0	0	0	0.027462	1	4793	4793		14.865	0	1	73972	+		18944	27041	15461	15483	20976	20976					0.10805703876553707
IKWLALIL	8	Unmodified	_IKWLALIL_					0	0	0			REV__ENST00000506275.1_1_5:52229685-52248278:+|nuORF	REV__ENST00000506275.1_1_5:52229685-52248278:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.2624816894531	2	485.328414	968.642274	0.13477	6.5405E-05	-4.3352	-0.002104	-4.2004	-0.0020386	485.3262860606213	57.608	0.46794	57.608	57.264	57.732	0					17	10	3	0	0	0	0.028476	1	4853	4853		12.959	2.0936	1	154460	+		18945	23277	15462	15484	20977	20977					0.1566989011004125
IKYAPNSNS	9	Unmodified	_IKYAPNSNS_					0	0	0			REV__tr|A0A7D6VT62|A0A7D6VT62_9CLOTcardiolipinsynthaseOS=ClostridiumintestinaleOX=36845GN=clsPE=4SV=1	REV__tr|A0A7D6VT62|A0A7D6VT62_9CLOTcardiolipinsynthaseOS=ClostridiumintestinaleOX=36845GN=clsPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	497.2961730957031	2	497.253631	992.49271	-0.9845	-0.00048955	0.3775	0.00018771	-0.607	-0.00030183	497.2541443576681	76.602	0.8914	74.231	73.98	74.871	-2.3715					26	16	2	0	0	0	0.027441	1	3948	3948		49.442	6.9671	1	19372	+		18946	31575	15463	15485	20978	20978					-0.003837069705241447
IKYIVNRGE	9	Unmodified	_IKYIVNRGE_					0	0	0		ENSG00000198648|ENST00000355999|STK39;nc|ENSG00000198648|Q9UEW8-2|STK39	ENSG00000198648|ENST00000355999|STK39	ENSG00000198648|ENST00000355999|STK39	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.2991943359375	2	546.314023	1090.61349	-0.88497	-0.00048347	-0.32297	-0.00017644	-1.2079	-0.00065991	546.3137616273688	74.115	2.2561	70.884	70.095	72.351	-3.2308					83	46	3	0	0	0	0.027462	1	5679	5679		20.947	0	1	1085600			18947	8842	15464	15486	20979	20979					0.07181120742961866
IKYNHEKL	8	Unmodified	_IKYNHEKL_					0	0	0		tr|A0A7D6W454|A0A7D6W454_9CLOTArsenicalpump-drivingATPaseOS=ClostridiumintestinaleOX=36845GN=arsAPE=3SV=1	tr|A0A7D6W454|A0A7D6W454_9CLOTArsenicalpump-drivingATPaseOS=ClostridiumintestinaleOX=36845GN=arsAPE=3SV=1	tr|A0A7D6W454|A0A7D6W454_9CLOTArsenicalpump-drivingATPaseOS=ClostridiumintestinaleOX=36845GN=arsAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	522.7933349609375	2	522.795466	1043.57638	-0.84797	-0.00044332	-3.5129	-0.0018365	-4.3609	-0.0022798	522.7936809473506	38.905	0.92759	38.905	38.619	39.547	0					45	20	5	0	0	0	0.35821	1	2238	2238		96.19	0	1	3473000			18948	35470	15465	15487	20980	20980					0.056334491971938405
IKYQPLNQI	9	Unmodified	_IKYQPLNQI_					0	0	0			REV__ENST00000407538.2_1_6:141243712-141243922:-|nuORF	REV__ENST00000407538.2_1_6:141243712-141243922:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.8464965820312	2	558.824224	1115.63389	-0.040896	-2.2853E-05	2.2808	0.0012745	2.2399	0.0012517	558.8255966798314	54.855	0.34757	54.855	54.632	54.98	0					11	7	2	0	0	0	0.027456	1	4423	4423		38.806	0	1	122380	+		18949	25451	15466	15488	20981	20981					0.08070291402736984
IKYSEIDKMKD	11	Unmodified	_IKYSEIDKMKD_					0	0	0			REV__tr|A0A7D6ZW54|A0A7D6ZW54_9CLOTPhosphatepropanoyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17660PE=3SV=1	REV__tr|A0A7D6ZW54|A0A7D6ZW54_9CLOTPhosphatepropanoyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17660PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.2802734375	3	457.239244	1368.6959	-0.33766	-0.00015439	-1.6049	-0.00073381	-1.9425	-0.0008882	457.23886527236436	35.979	0.27193	35.979	35.892	36.164	0					7	5	2	0	0	0	0.025863	1	1859	1859		25.068	0	1	21362	+		18950	32272	15467	15489	20982	20982					0.026302299689177744
IKYSLSTL	8	Unmodified	_IKYSLSTL_					0	0	0			REV__PDE11A|p.D619Sfs*16|1|0.06|ENSG00000128655|chr2:177728087-177728106|GTGATCATGGCATCAACGTC/-|frameshift_variant	REV__PDE11A|p.D619Sfs*16|1|0.06|ENSG00000128655|chr2:177728087-177728106|GTGATCATGGCATCAACGTC/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.7617492675781	2	462.773668	923.532783	-1.2082	-0.00055911	0.19725	9.1281E-05	-1.0109	-0.00046783	462.7741216752777	80.545	0.48494	77.834	77.665	78.15	-2.7106					10	9	2	0	0	0	0.028476	1	6566	6566		12.207	0	1	21124	+		18951	18866	15468	15490	20983	20983					0.06795839700043871
IKYYQNPD	8	Unmodified	_IKYYQNPD_					0	0	0			REV__ENST00000565738.1_1_16:75674022-75675473:-|nuORF	REV__ENST00000565738.1_1_16:75674022-75675473:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.8331298828125	2	520.756007	1039.49746	1.9585	0.0010199	-3.0515	-0.0015891	-1.093	-0.00056917	521.2553934649665	87.859	0.25075	87.859	87.671	87.921	0					7	5	2	0	0	0	0.028476	1	9296	9296		31.955	9.995	1	109690	+		18952	16793	15469	15491	20984	20984					-0.020708228277499074
ILAAPRLL	8	Unmodified	_ILAAPRLL_					0	0	0			REV__ENST00000249071.10_2_22:37621413-37621920:-|nuORF	REV__ENST00000249071.10_2_22:37621413-37621920:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	433.79559326171875	2	433.794738	865.574923	1.6323	0.0007081	-1.4478	-0.00062804	0.18456	8.0061E-05	433.79397915293447	113.07	1.9686	111.99	111.66	113.63	-1.0753					76	38	3	0	0	0	0.63104	1	8296	8296		57.453	2.688	1	587780	+		18953	23850	15470	15492	20985	20985					0.13675859899092302
ILADATEQV	9	Unmodified	_ILADATEQV_					0	0	0		nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-5|API5;ENST00000530300.1_1_11:43333659-43340360:+|nuORF;ENST00000455725.6_1_11:43333659-43340000:+|nuORF	nc|ENSG00000166181|Q9BZZ5-3|API5	nc|ENSG00000166181|Q9BZZ5-3|API5	MULTI-MSMS	OvCa99_classI_Rep5	1	480.2569274902344	2	480.25584	958.497126	2.3725	0.0011394	-0.33338	-0.00016011	2.0391	0.00097929	480.25541512960183	84.157	0.80132	84.157	83.671	84.472	0					40	18	4	0	0	0	0.010619	1	8784	8784		166.78	64.009	1	1214000			18954	6648	15471	15493	20986	20986					0.01621757452392103
ILADPSVLI	9	Unmodified	_ILADPSVLI_					0	0	0		tr|A0A553SUE4|A0A553SUE4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06775PE=4SV=1	tr|A0A553SUE4|A0A553SUE4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06775PE=4SV=1	tr|A0A553SUE4|A0A553SUE4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06775PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.21087646484375	2	470.789318	939.564084	0.97082	0.00045705	-0.61682	-0.00029039	0.354	0.00016666	470.78845516867875	113.1	0.39554	111.65	111.41	111.8	-1.4461					12	7	2	0	0	0	0.027462	1	10440	10440		37.159	0	1	16223			18955	34601	15472	15494	20987	20987					0.09188412734147278
ILADPSVLI	9	Unmodified	_ILADPSVLI_					0	0	0		tr|A0A553SUE4|A0A553SUE4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06775PE=4SV=1	tr|A0A553SUE4|A0A553SUE4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06775PE=4SV=1	tr|A0A553SUE4|A0A553SUE4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06775PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	470.789318	939.564084	0.37786	0.00017789	-0.2865	-0.00013488	0.091361	4.3012E-05	470.78867826754623	111.91	0.39409	111.77	111.62	112.01	-0.13961	0.060072	0.00018903	NaN	37.159	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5862.7			18956	34601	15472	15494							0.09188412734147278
ILADVVQKL	9	Unmodified	_ILADVVQKL_					0	0	0		ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	MULTI-MSMS	OvCa99_classI_Rep5	1	499.8174133300781	2	499.815867	997.617182	2.1876	0.0010934	0.28204	0.00014097	2.4697	0.0012344	499.8159013716079	102.83	0.67346	102.83	102.59	103.26	0					36	15	3	0	0	0	0.094616	1	11468	11468		98.629	13.714	1	2106700			18957	4677	15473	15495	20988	20988					0.11827790516804271
ILAETLGNLQ	10	Unmodified	_ILAETLGNLQ_					0	0	0		ENSG00000115423|ENST00000389394|DNAH6;nc|ENSG00000115423|Q9C0G6-4|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.275390625	2	536.305864	1070.59717	2.4727	0.0013261	0.33482	0.00017956	2.8075	0.0015057	536.3058099368346	98.843	0.81679	98.843	98.419	99.236	0					37	19	3	0	0	0	0.026871	1	10946	10946		29.15	1.2673	1	762480			18958	3097	15474	15496	20989	20989					0.06469994786198185
ILAEYLKSYPK	11	Unmodified	_ILAEYLKSYPK_					0	0	0		tr|A0A553SQF9|A0A553SQF9_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_07625PE=3SV=1	tr|A0A553SQF9|A0A553SQF9_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_07625PE=3SV=1	tr|A0A553SQF9|A0A553SQF9_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_07625PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	442.2955017089844	3	442.255223	1323.74384	1.1578	0.00051203	3.9138	0.0017309	5.0715	0.0022429	442.2570573567798	67.664	0.54951	64.777	64.59	65.139	-2.8873					25	10	4	0	0	0	0.026174	1	2862	2862		22.562	0	1	27053			18959	34154	15475	15497	20990	20990					0.09491671951263925
ILAFICKHL	9	Unmodified	_ILAFICKHL_					0	0	0		ACOT4|p.F406I|1|0.11|ENSG00000177465|chr14:73595604-73595604|T/A|missense_variant	ACOT4|p.F406I|1|0.11|ENSG00000177465|chr14:73595604-73595604|T/A|missense_variant	ACOT4|p.F406I|1|0.11|ENSG00000177465|chr14:73595604-73595604|T/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.8202514648438	2	529.31498	1056.61541	1.9879	0.0010522	-2.001	-0.0010591	-0.013073	-6.9198E-06	529.3142697859636	100.14	0.38411	100.14	99.896	100.28	0					17	8	3	0	0	0	0.027462	1	11060	11060		31.955	0	1	266620			18960	20	15476	15498	20991	20991					0.08936458227208277
ILAFLGWI	8	Unmodified	_ILAFLGWI_					0	0	0		ENSG00000163347|ENST00000295522|CLDN1	ENSG00000163347|ENST00000295522|CLDN1	ENSG00000163347|ENST00000295522|CLDN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	467.76605224609375	2	466.783839	931.553125	-0.12025	-5.613E-05	-2.5376	-0.0011845	-2.6579	-0.0012406	466.78165381491414	98.745	1.2403	96.38	96.086	97.326	-2.3654					44	23	3	0	0	0	0.028476	1	8880	8880		33.493	24.022	1	128120			18961	6290	15477	15499	20992	20992					0.08461055150507946
ILAFPRAWY	9	Unmodified	_ILAFPRAWY_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.826171875	2	568.816202	1135.61785	0.080036	4.5526E-05	-4.1491	-0.0023601	-4.0691	-0.0023146	568.8138031540207	70.989	0.38876	70.989	70.761	71.15	0					22	9	3	0	0	0	0.027462	1	6832	6832		20.482	0	1	732030			18962	4713	15478	15500	20993	20993					0.055466299565068766
ILAFSMIVPW	10	Unmodified	_ILAFSMIVPW_					0	0	0		tr|A0A553SN21|A0A553SN21_NIACIDUF1453familyproteinOS=NialliacirculansOX=1397GN=CEQ21_23615PE=4SV=1	tr|A0A553SN21|A0A553SN21_NIACIDUF1453familyproteinOS=NialliacirculansOX=1397GN=CEQ21_23615PE=4SV=1	tr|A0A553SN21|A0A553SN21_NIACIDUF1453familyproteinOS=NialliacirculansOX=1397GN=CEQ21_23615PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.3072509765625	2	588.827921	1175.64129	0.081848	4.8195E-05	2.7938	0.0016451	2.8757	0.0016933	588.8295696205452	64.705	0.57356	64.705	64.461	65.034	0					33	13	3	0	0	0	0.026939	1	5899	5899		31.955	5.2619	1	2327500			18963	33899	15479	15501	20994	20994					0.06049307678836158
ILAGIGFIW	9	Unmodified	_ILAGIGFIW_					0	0	0			REV__tr|A0A553SJX3|A0A553SJX3_NIACIAminoacidtransporterOS=NialliacirculansOX=1397GN=CEQ21_17615PE=4SV=1	REV__tr|A0A553SJX3|A0A553SJX3_NIACIAminoacidtransporterOS=NialliacirculansOX=1397GN=CEQ21_17615PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.287841796875	2	495.294571	988.574589	0.91691	0.00045414	-3.9782	-0.0019704	-3.0613	-0.0015162	495.2924895802759	110.36	0.57911	108.76	108.38	108.96	-1.6011					24	10	4	0	0	0	0.027462	1	10173	10173		21.702	0	1	39526	+		18964	30051	15480	15502	20995	20995					0.07984440179222929
ILAGRLGETI	10	Unmodified	_ILAGRLGETI_					0	0	0			REV__tr|A0A553SGB1|A0A553SGB1_NIACILPXTGcellwallanchordomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10515PE=3SV=1	REV__tr|A0A553SGB1|A0A553SGB1_NIACILPXTGcellwallanchordomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10515PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.2830810546875	2	521.816399	1041.61824	-1.2557	-0.00065526	-4.2234	-0.0022038	-5.4791	-0.0028591	521.8143211377967	71.432	0.73683	67.976	67.533	68.27	-3.4563					24	14	2	0	0	0	0.026956	1	5401	5401		42.396	19.354	1	37428	+		18965	29680	15481	15503	20996	20996					0.09910004885705348
ILAGSVGNVLL	11	Unmodified	_ILAGSVGNVLL_					0	0	0		ENST00000354370.5_2_8:76456102-76459880:+|nuORF	ENST00000354370.5_2_8:76456102-76459880:+|nuORF	ENST00000354370.5_2_8:76456102-76459880:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	528.3285522460938	2	528.326599	1054.63865	1.8443	0.00097437	0.22709	0.00011998	2.0713	0.0010943	528.3266119065299	92.989	0.45905	92.989	92.762	93.221	0					26	10	3	0	0	0	0.060105	1	10090	10090		109.48	13.663	1	4370100			18966	10663	15482	15504	20997	20997					0.11351175545541992
ILAIFGRISF	10	Unmodified	_ILAIFGRISF_					0	0	0		tr|A0A553SJ06|A0A553SJ06_NIACIMMPLfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_15855PE=3SV=1	tr|A0A553SJ06|A0A553SJ06_NIACIMMPLfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_15855PE=3SV=1	tr|A0A553SJ06|A0A553SJ06_NIACIMMPLfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_15855PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	568.8458251953125	2	568.844959	1135.67537	0.54686	0.00031108	2.1002	0.0011947	2.6471	0.0015058	568.8459810585302	123.26	2.2433	121.89	120.96	123.2	-1.3666					118	44	3	0	0	0	0.69986	1	11722	11722		30.504	2.6214	1	383340			18967	33450	15483	15505	20998	20998					0.11295472162078113
ILAILIAAGG	10	Unmodified	_ILAILIAAGG_					0	0	0		tr|A0A7D7A2T7|A0A7D7A2T7_9CLOTLCPfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18730PE=3SV=1	tr|A0A7D7A2T7|A0A7D7A2T7_9CLOTLCPfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18730PE=3SV=1	tr|A0A7D7A2T7|A0A7D7A2T7_9CLOTLCPfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18730PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.3011779785156	2	456.299853	910.585153	-1.1569	-0.00052792	1.017	0.00046406	-0.13993	-6.3852E-05	456.30018280273066	88.663	1.4396	86.06	85.781	87.221	-2.6027					66	28	4	0	0	0	0.32406	1	7600	7600		77.944	12.046	1	484470			18968	36090	15484	15506	20999	20999					0.1262842283365444
ILAILIAAGG	10	Unmodified	_ILAILIAAGG_					0	0	0		tr|A0A7D7A2T7|A0A7D7A2T7_9CLOTLCPfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18730PE=3SV=1	tr|A0A7D7A2T7|A0A7D7A2T7_9CLOTLCPfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18730PE=3SV=1	tr|A0A7D7A2T7|A0A7D7A2T7_9CLOTLCPfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18730PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	456.299853	910.585153	2.5912	0.0011824	-2.6965	-0.0012304	-0.10526	-4.803E-05	456.2984694642446	87.602	1.4254	86.171	85.791	87.217	-1.4311	0.048714	-0.0022384	NaN	77.944	69	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	259400			18969	36090	15484	15506							0.1262842283365444
ILAIRSILL	9	Unmodified	_ILAIRSILL_					0	0	0		ENSG00000176895|ENST00000641490|OR51A7	ENSG00000176895|ENST00000641490|OR51A7	ENSG00000176895|ENST00000641490|OR51A7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.81182861328125	2	506.349877	1010.6852	-0.95509	-0.00048361	-1.3008	-0.00065866	-2.2559	-0.0011423	506.349167350124	101.28	1.4996	99.013	98.792	100.29	-2.2665					87	29	4	0	0	0	0.027047	1	9104	9104		76.774	12.567	1	1372500			18970	7634	15485	15507	21000	21000					0.18028660167476573
ILAKGGGQAVI	11	Unmodified	_ILAKGGGQAVI_					0	0	0			REV__nc|ENSG00000141161|Q8IWX7-2|UNC45B	REV__nc|ENSG00000141161|Q8IWX7-2|UNC45B	MULTI-SECPEP	OvCa9_classI_Rep3	3	514.8106689453125	2	513.818941	1025.62333	0.17019	8.7447E-05	-0.22979	-0.00011807	-0.059599	-3.0623E-05	513.8185963872986	114.75	0.88826	113.69	113.35	114.24	-1.055					28	17	2	0	0	0	0.025239	1	8494	8494		58.782	29.632	1	41725	+		18971	19719	15486	15508	21001	21001					0.11154308748336916
ILAKGKQSI	9	Unmodified	_ILAKGKQSI_					0	0	0		nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	nc|ENSG00000198589|P50851-2|LRBA	nc|ENSG00000198589|P50851-2|LRBA	MULTI-SECPEP	OvCa9_classI_Rep3	3	479.7939453125	2	479.30821	956.601866	1.943	0.00093129	-2.8173	-0.0013504	-0.87433	-0.00041907	479.3067354366409	112.75	0.49276	111.67	111.46	111.96	-1.0753					17	9	2	0	0	0	0.027462	1	8276	8276		11.511	2.3281	1	33483			18972	8832	15487	15509	21002	21002					0.12182923719592509
ILAKGKQSI	9	Unmodified	_ILAKGKQSI_					0	0	0		nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	nc|ENSG00000198589|P50851-2|LRBA	nc|ENSG00000198589|P50851-2|LRBA	MULTI-MATCH	OvCa9_classI_Rep2	2		2	479.30821	956.601866	0.17881	8.5706E-05	-0.50776	-0.00024337	-0.32895	-0.00015767	479.30777748367024	111.69	0.63982	111.55	111.27	111.91	-0.13961	-0.086721	0.00091751	NaN	17.365	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39541			18973	8832	15487	15509							0.12182923719592509
ILAKNAGLL	9	Unmodified	_ILAKNAGLL_					0	0	0			REV__ENST00000457458.6_1_X:47088276-47088456:+|nuORF	REV__ENST00000457458.6_1_X:47088276-47088456:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.7982482910156	2	456.797478	911.580402	-0.19337	-8.8331E-05	-0.21738	-9.9301E-05	-0.41075	-0.00018763	456.7973138081142	105.4	4.1348	103.39	102.95	107.09	-2.0161					221	81	4	0	0	0	0.39645	1	9701	9701		52.299	2.2746	1	1556700	+		18974	26047	15488	15510	21003	21003					0.12107538690884212
ILALAPRLL	9	Unmodified	_ILALAPRLL_					0	0	0		ENST00000482974.1_1_3:50614485-50617422:+|nuORF;ENST00000448997.5_1_3:50608680-50617422:+|nuORF;ENSG00000114735|ENST00000232854|HEMK1	ENST00000482974.1_1_3:50614485-50617422:+|nuORF	ENST00000482974.1_1_3:50614485-50617422:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	490.3360595703125	2	490.33677	978.658987	0.31976	0.00015679	-1.1553	-0.00056648	-0.83553	-0.00040969	490.3362879264998	135.18	3.9777	134.96	134.64	138.62	-0.22697					225	81	5	0	0	0	0.39645	4	13479	13479;13497;13552;13583		52.299	8.0654	1	7114000			18975	3035	15489	15511	21004;21005;21006;21007	21004					0.16880390995981998
ILALIWVK	8	Unmodified	_ILALIWVK_					0	0	0		tr|A0A7D7A636|A0A7D7A636_9CLOTPutativeABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08780PE=4SV=1	tr|A0A7D7A636|A0A7D7A636_9CLOTPutativeABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08780PE=4SV=1	tr|A0A7D7A636|A0A7D7A636_9CLOTPutativeABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08780PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.7781066894531	2	478.320589	954.626624	-0.34933	-0.00016709	-4.2812	-0.0020478	-4.6305	-0.0022149	478.3184378736424	73.27	0.68066	70.87	70.636	71.317	-2.3999					19	12	2	0	0	0	0.028476	1	6006	6006		33.516	10.473	1	29556			18976	36184	15490	15512	21008	21008					0.14749603592974836
ILALKLKNK	9	Unmodified	_ILALKLKNK_					0	0	0			REV__ENST00000552427.1_1_12:105464346-105478214:-|nuORF	REV__ENST00000552427.1_1_12:105464346-105478214:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.7833862304688	2	520.863152	1039.71175	-0.53836	-0.00028041	0.26567	0.00013838	-0.27268	-0.00014203	520.8632131516918	21.03	0.80775	19.692	19.26	20.068	-1.3386					25	16	2	0	0	0	0.027462	1	78	78		12.959	0.75233	1	29292	+		18977	19349	15491	15513	21009	21009					0.19348349058782333
ILALSRPLI	9	Unmodified	_ILALSRPLI_					0	0	0			REV__nc|ENSG00000112984|O95235-2|KIF20A;REV__KIF20A|p.A427Vfs*40|1|0.19|ENSG00000112984|chr5:138184032-138184033|-/TGTTC|frameshift_variant	REV__KIF20A|p.A427Vfs*40|1|0.19|ENSG00000112984|chr5:138184032-138184033|-/TGTTC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3341369628906	2	498.334227	994.653902	-0.31291	-0.00015594	0.085793	4.2754E-05	-0.22712	-0.00011318	498.334174042398	135.29	1.7167	135.06	134.69	136.4	-0.22696					83	34	4	0	0	0	0.42057	1	13470	13470		50.025	0	1	281670	+		18978	18131;28335	15492	15514	21010	21010					0.15636087133384535
ILALSRPLI	9	Unmodified	_ILALSRPLI_					0	0	0			REV__nc|ENSG00000112984|O95235-2|KIF20A;REV__KIF20A|p.A427Vfs*40|1|0.19|ENSG00000112984|chr5:138184032-138184033|-/TGTTC|frameshift_variant	REV__KIF20A|p.A427Vfs*40|1|0.19|ENSG00000112984|chr5:138184032-138184033|-/TGTTC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	498.33355712890625	2	498.334227	994.653902	1.2643	0.00063007	-1.8659	-0.00092985	-0.60157	-0.00029978	498.3332884380841	124.71	3.4398	123.66	123.27	126.71	-1.0519					179	65	5	0	0	0	0.46377	1	9772	9772		45.952	7.1458	1	3929400	+		18979	18131;28335	15492	15514	21011	21011					0.15636087133384535
ILALVWMPL	9	Unmodified	_ILALVWMPL_					0	0	0			REV__ENSG00000100368|ENST00000403662|CSF2RB	REV__ENSG00000100368|ENST00000403662|CSF2RB	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.8603515625	2	528.319731	1054.62491	2.4175	0.0012772	0.933	0.00049292	3.3505	0.0017702	528.3202385475453	94.51	0.38459	94.51	94.348	94.732	0					9	8	2	0	0	0	0.027462	1	10295	10295		14.664	0	1	69231	+		18980	17408	15493	15515	21012	21012					0.09978226512725996
ILAMAKAVSP	10	Unmodified	_ILAMAKAVSP_					0	0	0			REV__ENSG00000179532|ENST00000254579|DNHD1	REV__ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	OvCa9_classI_Rep2	2	500.7944641113281	2	500.79662	999.578688	-0.33551	-0.00016802	-3.4741	-0.0017398	-3.8096	-0.0019078	500.7948099501536	108.45	4.1006	108.22	107.63	111.73	-0.22498					184	82	6	0	0	0	0.48198	1	10199	10199		56.721	1.2168	1	2094300	+		18981	22127	15494	15516	21013	21013					0.07888161610628686
ILAQEMMTD	9	Unmodified	_ILAQEMMTD_					0	0	0		nc|ENSG00000116171|P22307-3|SCP2;nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;nc|ENSG00000116171|P22307-4|SCP2	nc|ENSG00000116171|P22307-3|SCP2	nc|ENSG00000116171|P22307-3|SCP2	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.2844848632812	2	526.24356	1050.47257	-0.76421	-0.00040216	0.44237	0.00023279	-0.32184	-0.00016937	526.2438931539967	114.94	0.5919	113.89	113.55	114.14	-1.055					16	11	2	0	0	0	0.027462	1	8502	8502		53.351	6.585	1	9000.2			18982	3160	15495	15517	21014	21014					-0.05064962017013386
ILARDILEI	9	Unmodified	_ILARDILEI_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF;PSMD8|p.Q202Lfs*40|1|0.12|ENSG00000099341|chr19:38379307-38379308|-/TGGGCGACAGAGCA|frameshift_variant	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	OvCa99_classI_Rep5	1	528.3280029296875	2	528.326599	1054.63865	1.8804	0.00099348	0.60895	0.00032173	2.4894	0.0013152	528.3268496576393	118.16	1.1212	118.16	117.88	119.01	0					66	23	4	0	0	0	0.043101	1	13556	13556		124.08	13.96	1	2785800			18983	1970	15496	15518	21015	21015					0.11351175545519254
ILARIASVEEG	11	Unmodified	_ILARIASVEEG_					0	0	0		ENSG00000146350|ENST00000398212|TBC1D32;nc|ENSG00000146350|Q96NH3-4|TBC1D32	ENSG00000146350|ENST00000398212|TBC1D32	ENSG00000146350|ENST00000398212|TBC1D32	MULTI-MSMS	OvCa99_classI_Rep5	1	579.3336791992188	2	579.32987	1156.64519	1.6824	0.00097467	3.8783	0.0022468	5.5607	0.0032215	579.3319867548784	98.706	1.5764	98.706	97.912	99.488	0					101	37	4	0	0	0	0.31264	1	10865	10865		67.494	1.6905	1	12142000			18984	5284	15497	15519	21016	21016					0.07313068706230297
ILASEQNR	8	Unmodified	_ILASEQNR_					0	0	0			REV__tr|A0A7D6W1R7|A0A7D6W1R7_9CLOTGfo/Idh/MocAfamilyoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03705PE=4SV=1	REV__tr|A0A7D6W1R7|A0A7D6W1R7_9CLOTGfo/Idh/MocAfamilyoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03705PE=4SV=1	MSMS	OvCa9_classI_Rep4_	4	465.75457763671875	2	465.753798	929.493044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.375	1	50.167	49.667	50.667	-3.208								0	0	0	0.30129	1	3251	3251		68.787	5.4806	1		+		18985	31888	15498	15520	21017	21017					0.025477127493331864
ILASFDNFK	9	Unmodified	_ILASFDNFK_					0	0	0		FMNL1|p.A292S|1|0.04|ENSG00000184922|chr17:45237619-45237619|G/T|missense_variant	FMNL1|p.A292S|1|0.04|ENSG00000184922|chr17:45237619-45237619|G/T|missense_variant	FMNL1|p.A292S|1|0.04|ENSG00000184922|chr17:45237619-45237619|G/T|missense_variant	MSMS	OvCa9_classI_Rep4_	4	527.7802734375	2	527.782025	1053.5495	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.62	1	117.28	116.78	117.78	-1.3444								0	0	0	0.16997	1	11118	11118		51.335	0	1				18986	14334	15499	15521	21018	21018					0.02486340585983271
ILASMVPPF	9	Unmodified	_ILASMVPPF_					0	0	0		tr|A0A553SQ30|A0A553SQ30_NIACIPTSfructosetransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_15115PE=4SV=1	tr|A0A553SQ30|A0A553SQ30_NIACIPTSfructosetransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_15115PE=4SV=1	tr|A0A553SQ30|A0A553SQ30_NIACIPTSfructosetransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_15115PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	487.7763366699219	2	487.772614	973.530675	2.7191	0.0013263	3.6029	0.0017574	6.322	0.0030837	487.77426126277766	89.474	0.56969	89.474	89.193	89.763	0					25	13	3	0	0	0	0.30002	1	9559	9559		62.978	15.321	1	1161400			18987	34111	15500	15522	21019	21019					0.042850876905845325
ILASYTAF	8	Unmodified	_ILASYTAF_					0	0	0			REV__ENSG00000064932|ENST00000361757|SBNO2	REV__ENSG00000064932|ENST00000361757|SBNO2	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.2927551269531	2	443.239461	884.46437	0.79582	0.00035274	2.7166	0.0012041	3.5124	0.0015568	443.240655097598	56.431	0.19773	56.431	56.3	56.498	0					9	4	3	0	0	0	0.028476	1	4684	4684		4.3163	0	1	121710	+		18988	16779	15501	15523	21020	21020					0.01751595120174443
ILATLLLLGG	10	Unmodified	_ILATLLLLGG_					0	0	0			REV__ENSG00000160318|ENST00000291715|CLDND2	REV__ENSG00000160318|ENST00000291715|CLDND2	MULTI-MSMS	OvCa99_classI_Rep5	1	492.3296203613281	2	492.328611	982.642668	1.1792	0.00058056	0.89639	0.00044132	2.0756	0.0010219	492.32886708648493	130.86	1.0918	130.86	130.53	131.62	0					36	22	3	0	0	0	0.37918	1	15187	15187		71.296	4.8664	1	169400	+		18989	20656	15502	15524	21021	21021					0.15065265039254427
ILAVRAVHS	9	Unmodified	_ILAVRAVHS_					0	0	0		ENST00000569093.1_1_16:2479482-2485933:+|nuORF;CCNF|p.P753Kfs*22|1|0.2|ENSG00000162063|chr16:2456913-2456914|CC/-|frameshift_variant;ENSG00000162063|ENST00000397066|CCNF	ENST00000569093.1_1_16:2479482-2485933:+|nuORF	ENST00000569093.1_1_16:2479482-2485933:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.7549133300781	2	483.298176	964.581799	-0.073298	-3.5425E-05	-0.12744	-6.1593E-05	-0.20074	-9.7017E-05	483.29798684347764	60.616	0.67585	60.616	60.352	61.028	0					29	15	3	0	0	0	0.027462	1	5346	5346		23.042	0	1	533930			18990	200	15503	15525	21022	21022					0.09809172779648634
ILAWRIKND	9	Unmodified	_ILAWRIKND_					0	0	0			REV__nc|ENSG00000183091|P20929-4|NEB	REV__nc|ENSG00000183091|P20929-4|NEB	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.2484130859375	2	564.82984	1127.64513	0.49945	0.00028211	-1.1662	-0.00065873	-0.66679	-0.00037662	564.82935611279	62.949	0.64119	62.949	62.335	62.976	0					20	15	2	0	0	0	0.027456	1	5564	5564		47.916	17.412	1	354640	+		18991	22341	15504	15526	21023	21023					0.08641113496878461
ILAYSYFTI	9	Unmodified	_ILAYSYFTI_					0	0	0			REV__tr|A0A553SP74|A0A553SP74_NIACIYggTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25890PE=3SV=1	REV__tr|A0A553SP74|A0A553SP74_NIACIYggTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25890PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.81494140625	2	545.794601	1089.57465	-0.76542	-0.00041776	-4.47	-0.0024397	-5.2354	-0.0028574	545.7924975640277	94.761	1.1291	92.292	91.432	92.561	-2.4685					41	22	3	0	0	0	0.027462	1	8322	8322		24.203	1.1603	1	72913	+		18992	30504	15505	15527	21024	21024					0.03344395388580779
ILAYSYFTI	9	Unmodified	_ILAYSYFTI_					0	0	0			REV__tr|A0A553SP74|A0A553SP74_NIACIYggTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25890PE=3SV=1	REV__tr|A0A553SP74|A0A553SP74_NIACIYggTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25890PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	545.794601	1089.57465	-0.09316	-5.0846E-05	-5.3048	-0.0028954	-5.398	-0.0029462	545.7921033368414	93.403	1.2353	92.235	91.288	92.523	-1.168	-0.028639	-0.00051518	NaN	38.806	32	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69182	+		18993	30504	15505	15527							0.03344395388580779
ILCDMMADPW	10	Carbamidomethyl (C),Oxidation (M)	_ILC(Carbamidomethyl (C))DM(Oxidation (M))MADPW_	ILC(1)DMMADPW	ILCDM(0.5)M(0.5)ADPW	ILC(66)DMMADPW	ILCDM(0)M(0)ADPW	0	1	1		nc|ENSG00000155066|Q8N271-3|PROM2;ENST00000487138.5_1_2:95944617-95954741:+|nuORF;nc|ENSG00000155066|Q8N271-2|PROM2;ENSG00000155066|ENST00000317620|PROM2	nc|ENSG00000155066|Q8N271-3|PROM2	nc|ENSG00000155066|Q8N271-3|PROM2	MULTI-MSMS	OvCa99_classI_Rep5	1	634.2639770507812	2	634.261427	1266.5083	2.2866	0.0014503	2.1966	0.0013932	4.4832	0.0028435	634.2625574437442	92.977	0.50162	92.977	92.803	93.305	0					24	11	3	0	0	0	0.41846	1	10075	10075		65.803	12.866	2	1119700			18994	5766	15506	15528	21025	21025	56	185;186			-0.11429247831642897
ILCDMMADPW	10	Carbamidomethyl (C),Oxidation (M)	_ILC(Carbamidomethyl (C))DM(Oxidation (M))MADPW_					0	1	1		nc|ENSG00000155066|Q8N271-3|PROM2;ENST00000487138.5_1_2:95944617-95954741:+|nuORF;nc|ENSG00000155066|Q8N271-2|PROM2;ENSG00000155066|ENST00000317620|PROM2	nc|ENSG00000155066|Q8N271-3|PROM2	nc|ENSG00000155066|Q8N271-3|PROM2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	634.261427	1266.5083	-0.93346	-0.00059206	2.4265	0.001539	1.4931	0.00094699	634.2628452614143	93.68	0.83376	92.581	92.072	92.906	-1.0995	-0.19806	0.00012219	NaN	65.803	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27218			18995	5766	15506	15528			56	185;186			-0.11429247831642897
ILCISPVII	9	Unmodified	_ILCISPVII_					0	0	0		PIKFYVE|p.T1061I|1|0.4|ENSG00000115020|chr2:208325993-208325993|C/T|missense_variant	PIKFYVE|p.T1061I|1|0.4|ENSG00000115020|chr2:208325993-208325993|C/T|missense_variant	PIKFYVE|p.T1061I|1|0.4|ENSG00000115020|chr2:208325993-208325993|C/T|missense_variant	MSMS	OvCa9_classI_Rep4_	4	485.80450439453125	2	485.803914	969.593275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	150.95	1	149.52	149.02	150.02	-1.4344								0	0	0	0.24998	1	14917	14917		18.324	1.8513	1				18996	15502	15507	15529	21026	21026					0.10726233758782655
ILCLILRTI	9	Unmodified	_ILCLILRTI_					0	0	0			REV__ENST00000237654.8_1_4:77968731-77968890:-|nuORF	REV__ENST00000237654.8_1_4:77968731-77968890:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3439331054688	2	529.343738	1056.67292	1.4269	0.00075534	-3.2703	-0.0017311	-1.8433	-0.00097576	529.3419001141868	149.02	0.78	149.02	148.77	149.55	0					20	15	2	0	0	0	0.027462	1	17461	17461		23.042	0	1	33741	+		18997	23811	15508	15530	21027	21027					0.14685300432779513
ILCLLTATTD	10	Unmodified	_ILCLLTATTD_					0	0	0		tr|A0A553SUI3|A0A553SUI3_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00170PE=3SV=1	tr|A0A553SUI3|A0A553SUI3_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00170PE=3SV=1	tr|A0A553SUI3|A0A553SUI3_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00170PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.2715454101562	2	532.288825	1062.5631	0.86577	0.00046084	-1.5485	-0.00082424	-0.68272	-0.0003634	532.2876803871094	140.05	0.51096	140.05	139.66	140.17	0					15	10	2	0	0	0	0.026915	1	16323	16323		20.947	0	1	31170			18998	34613	15509	15531	21028	21028					0.034318303029067465
ILCPILCCGLD	11	Unmodified	_ILCPILCCGLD_					0	0	0			REV__nc|ENSG00000089486|Q9H305-3|CDIP1	REV__nc|ENSG00000089486|Q9H305-3|CDIP1	MULTI-MSMS	OvCa99_classI_Rep5	1	581.786376953125	2	581.787081	1161.55961	0.72191	0.00042	-1.3948	-0.00081145	-0.67285	-0.00039145	581.7860160400336	154.96	2.1777	154.96	154.47	156.65	0					88	42	3	0	0	0	0.62497	2	18155	18155;18178		42.396	6.7778	1	201530	+		18999	17209	15510	15532	21029;21030	21029					-0.014708790669601512
ILCTFIVPL	9	Unmodified	_ILCTFIVPL_					0	0	0		ENST00000525842.5_1_11:130103206-130103302:-|nuORF	ENST00000525842.5_1_11:130103206-130103302:-|nuORF	ENST00000525842.5_1_11:130103206-130103302:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.80352783203125	2	509.803914	1017.59328	2.0238	0.0010317	-2.3362	-0.001191	-0.31239	-0.00015926	509.80258654056354	136.53	4.9049	134.99	133.61	138.51	-1.5437					290	101	5	0	0	0	0.57242	1	13159	13159		35.201	6.0512	1	173450			19000	13202	15511	15533	21031	21031					0.08518233758763927
ILCTRIGKC	9	Unmodified	_ILCTRIGKC_					0	0	0			REV__nc|ENSG00000160993|Q9NXW9-2|ALKBH4	REV__nc|ENSG00000160993|Q9NXW9-2|ALKBH4	MULTI-MSMS	OvCa9_classI_Rep2	2	503.7786865234375	2	503.780447	1005.54634	-3.0867	-0.001555	-0.36288	-0.00018281	-3.4496	-0.0017378	503.78006253314857	36.309	2.2758	33.6	32.75	35.026	-2.7097					126	45	4	0	0	0	0.44294	1	1583	1583		47.916	10.887	1	296190	+		19001	20685	15512	15534	21032	21032					0.043790509359837415
ILCVKEPP	8	Unmodified	_ILCVKEPP_					0	0	0			REV__ENSG00000196344|ENST00000437033|ADH7	REV__ENSG00000196344|ENST00000437033|ADH7	MULTI-MSMS	OvCa99_classI_Rep5	1	449.7590026855469	2	449.756964	897.499375	0.96889	0.00043576	3.4019	0.00153	4.3708	0.0019658	449.7583790937017	45.603	1.2142	45.603	45.373	46.587	0					55	27	4	0	0	0	0.47599	1	3184	3184		79.939	3.0926	1	4176100	+		19002	22813	15513	15535	21033	21033					0.046525146564931674
ILDAIFYTD	9	Unmodified	_ILDAIFYTD_					0	0	0			REV__tr|A0A7D6ZT99|A0A7D6ZT99_9CLOTRibosomematurationfactorRimMOS=ClostridiumintestinaleOX=36845GN=rimMPE=3SV=1	REV__tr|A0A7D6ZT99|A0A7D6ZT99_9CLOTRibosomematurationfactorRimMOS=ClostridiumintestinaleOX=36845GN=rimMPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.8421630859375	2	535.773865	1069.53318	-1.0443	-0.0005595	-1.9634	-0.001052	-3.0077	-0.0016115	535.7728733262061	106.19	0.89666	105.76	105.5	106.39	-0.43642					26	17	2	0	0	0	0.027433	1	9949	9949		38.806	12.743	1	22302	+		19003	32203	15514	15536	21034	21034					0.001192146292396501
ILDAIFYTD	9	Unmodified	_ILDAIFYTD_					0	0	0			REV__tr|A0A7D6ZT99|A0A7D6ZT99_9CLOTRibosomematurationfactorRimMOS=ClostridiumintestinaleOX=36845GN=rimMPE=3SV=1	REV__tr|A0A7D6ZT99|A0A7D6ZT99_9CLOTRibosomematurationfactorRimMOS=ClostridiumintestinaleOX=36845GN=rimMPE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	535.773865	1069.53318	0.4793	0.0002568	-2.2426	-0.0012015	-1.7633	-0.00094471	535.7725052821179	105.48	0.9614	105.48	105.27	106.23	0	-0.25199	0.00071477	NaN	38.806	27	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	433380	+		19004	32203	15514	15536							0.001192146292396501
ILDAIFYTD	9	Unmodified	_ILDAIFYTD_					0	0	0			REV__tr|A0A7D6ZT99|A0A7D6ZT99_9CLOTRibosomematurationfactorRimMOS=ClostridiumintestinaleOX=36845GN=rimMPE=3SV=1	REV__tr|A0A7D6ZT99|A0A7D6ZT99_9CLOTRibosomematurationfactorRimMOS=ClostridiumintestinaleOX=36845GN=rimMPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	535.773865	1069.53318	1.277	0.00068416	-5.0848	-0.0027243	-3.8079	-0.0020402	535.7710933686399	107.22	0.65092	105.95	105.76	106.41	-1.267	0.22237	-0.0023308	NaN	38.806	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57632	+		19005	32203	15514	15536							0.001192146292396501
ILDCQFSEF	9	Unmodified	_ILDCQFSEF_					0	0	0		nc|ENSG00000123178|Q5W111-2|SPRYD7;ENSG00000123178|ENST00000361840|SPRYD7	nc|ENSG00000123178|Q5W111-2|SPRYD7	nc|ENSG00000123178|Q5W111-2|SPRYD7	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3020629882812	2	551.2497	1100.48485	1.4119	0.00077831	1.4019	0.00077281	2.8138	0.0015511	551.7519696693689	127.26	0.71265	127.26	127.01	127.72	0					22	15	2	0	0	0	0.027462	1	14759	14759		35.618	13.658	1	93540			19006	3582	15515	15537	21035	21035					-0.06137602282319676
ILDCQFSEF	9	Unmodified	_ILDCQFSEF_					0	0	0		nc|ENSG00000123178|Q5W111-2|SPRYD7;ENSG00000123178|ENST00000361840|SPRYD7	nc|ENSG00000123178|Q5W111-2|SPRYD7	nc|ENSG00000123178|Q5W111-2|SPRYD7	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	551.2497	1100.48485	0.34345	0.00018933	-4.0611	-0.0022387	-3.7177	-0.0020494	551.7492828682919	128.62	0.34665	127.16	127	127.35	-1.4565	-0.051012	-0.0041013	NaN	44.117	10	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10158			19007	3582	15515	15537							-0.06137602282319676
ILDDGSSYTSQ	11	Unmodified	_ILDDGSSYTSQ_					0	0	0		nc|ENSG00000114541|Q9Y2L6-2|FRMD4B;ENSG00000114541|ENST00000398540|FRMD4B	nc|ENSG00000114541|Q9Y2L6-2|FRMD4B	nc|ENSG00000114541|Q9Y2L6-2|FRMD4B	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.3077392578125	2	593.267133	1184.51971	0.94939	0.00056324	-3.0835	-0.0018293	-2.1341	-0.0012661	593.2652622366878	153.12	0.14975	153.12	153	153.15	0					4	2	2	0	0	0	0.025701	1	17928	17928		22.58	3.2197	1	18333			19008	3026	15516	15538	21036	21036					-0.06516687940643351
ILDDIGHGV	9	Unmodified	_ILDDIGHGV_					0	0	0		nc|ENSG00000138443|Q9NYB9-4|ABI2;nc|ENSG00000138443|Q9NYB9|ABI2;ABI2|p.E467Kfs*27|1|0.4|ENSG00000138443|chr2:203427208-203427208|G/-|frameshift_variant;ENSG00000138443|ENST00000261018|ABI2;ENST00000376135.5_1_2:204193204-204247972:+|nuORF;nc|ENSG00000138443|Q9NYB9-2|ABI2;nc|ENSG00000138443|Q9NYB9-3|ABI2;ENST00000441061.5_2_2:204231693-204292072:+|nuORF	nc|ENSG00000138443|Q9NYB9-4|ABI2	nc|ENSG00000138443|Q9NYB9-4|ABI2	MULTI-MSMS	OvCa99_classI_Rep5	1	469.75213623046875	2	469.750724	937.486896	2.1612	0.0010152	0.34058	0.00015999	2.5018	0.0011752	469.75075023136077	85.563	0.7731	85.563	85.38	86.153	0					32	18	3	0	0	0	0.13154	1	8983	8983		88.643	6.3378	1	2134100			19009	9	15517	15539	21037	21037					0.015651945178206006
ILDDIGHGV	9	Unmodified	_ILDDIGHGV_					0	0	0		nc|ENSG00000138443|Q9NYB9-4|ABI2;nc|ENSG00000138443|Q9NYB9|ABI2;ABI2|p.E467Kfs*27|1|0.4|ENSG00000138443|chr2:203427208-203427208|G/-|frameshift_variant;ENSG00000138443|ENST00000261018|ABI2;ENST00000376135.5_1_2:204193204-204247972:+|nuORF;nc|ENSG00000138443|Q9NYB9-2|ABI2;nc|ENSG00000138443|Q9NYB9-3|ABI2;ENST00000441061.5_2_2:204231693-204292072:+|nuORF	nc|ENSG00000138443|Q9NYB9-4|ABI2	nc|ENSG00000138443|Q9NYB9-4|ABI2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	469.750724	937.486896	1.123	0.00052751	-2.3169	-0.0010884	-1.1939	-0.00056084	469.7494577274117	87.297	0.98437	85.866	85.642	86.627	-1.4311	-0.010621	-0.001635	NaN	88.643	24	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16993			19010	9	15517	15539							0.015651945178206006
ILDDIGHGV	9	Unmodified	_ILDDIGHGV_					0	0	0		nc|ENSG00000138443|Q9NYB9-4|ABI2;nc|ENSG00000138443|Q9NYB9|ABI2;ABI2|p.E467Kfs*27|1|0.4|ENSG00000138443|chr2:203427208-203427208|G/-|frameshift_variant;ENSG00000138443|ENST00000261018|ABI2;ENST00000376135.5_1_2:204193204-204247972:+|nuORF;nc|ENSG00000138443|Q9NYB9-2|ABI2;nc|ENSG00000138443|Q9NYB9-3|ABI2;ENST00000441061.5_2_2:204231693-204292072:+|nuORF	nc|ENSG00000138443|Q9NYB9-4|ABI2	nc|ENSG00000138443|Q9NYB9-4|ABI2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	469.750724	937.486896	-0.18244	-8.5703E-05	-0.04546	-2.1355E-05	-0.2279	-0.00010706	469.75038944997453	88.21	0.85512	86.08	85.752	86.607	-2.1309	0.20318	0.00049902	NaN	88.643	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45111			19011	9	15517	15539							0.015651945178206006
ILDDIGHGV	9	Unmodified	_ILDDIGHGV_					0	0	0		nc|ENSG00000138443|Q9NYB9-4|ABI2;nc|ENSG00000138443|Q9NYB9|ABI2;ABI2|p.E467Kfs*27|1|0.4|ENSG00000138443|chr2:203427208-203427208|G/-|frameshift_variant;ENSG00000138443|ENST00000261018|ABI2;ENST00000376135.5_1_2:204193204-204247972:+|nuORF;nc|ENSG00000138443|Q9NYB9-2|ABI2;nc|ENSG00000138443|Q9NYB9-3|ABI2;ENST00000441061.5_2_2:204231693-204292072:+|nuORF	nc|ENSG00000138443|Q9NYB9-4|ABI2	nc|ENSG00000138443|Q9NYB9-4|ABI2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	469.750724	937.486896	-1.27	-0.00059659	0.56245	0.00026421	-0.70757	-0.00033238	469.75085928434817	88.6	0.75061	85.997	85.781	86.532	-2.6027	0.12109	0.0010702	NaN	88.643	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56779			19012	9	15517	15539							0.015651945178206006
ILDDQTNKL	9	Unmodified	_ILDDQTNKL_					0	0	0		nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2;DAB2|p.S313Ffs*14|1|0.1|ENSG00000153071|chr5:39383023-39383024|-/G|frameshift_variant;nc|ENSG00000153071|P98082-2|DAB2;ENST00000483232.6_1_5:39342295-39388936:-|nuORF;ENST00000505968.1_1_5:39388391-39388936:-|nuORF;ENST00000512525.5_1_5:39385512-39390599:-|nuORF	nc|ENSG00000153071|P98082-3|DAB2	nc|ENSG00000153071|P98082-3|DAB2	MULTI-MSMS	OvCa99_classI_Rep5	1	530.2880249023438	2	530.287671	1058.56079	-0.24576	-0.00013032	0.070573	3.7424E-05	-0.17518	-9.2898E-05	530.2873888465609	68.625	0.62443	68.625	68.315	68.939	0					31	14	3	0	0	0	0.036986	1	6486	6486		129.42	19.301	1	2179300			19013	5659	15518	15540	21038	21038					0.03385117889479261
ILDDQTNKL	9	Unmodified	_ILDDQTNKL_					0	0	0		nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2;DAB2|p.S313Ffs*14|1|0.1|ENSG00000153071|chr5:39383023-39383024|-/G|frameshift_variant;nc|ENSG00000153071|P98082-2|DAB2;ENST00000483232.6_1_5:39342295-39388936:-|nuORF;ENST00000505968.1_1_5:39388391-39388936:-|nuORF;ENST00000512525.5_1_5:39385512-39390599:-|nuORF	nc|ENSG00000153071|P98082-3|DAB2	nc|ENSG00000153071|P98082-3|DAB2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	530.287671	1058.56079	-2.0234	-0.001073	2.1488	0.0011395	0.12539	6.6491E-05	530.2887216124709	72.146	0.63551	68.69	68.509	69.144	-3.4563	0.032357	0.001018	NaN	129.42	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230250			19014	5659	15518	15540							0.03385117889479261
ILDDSHLLV	9	Unmodified	_ILDDSHLLV_					0	0	0		ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	OvCa99_classI_Rep5	1	512.7890014648438	2	512.787307	1023.56006	1.5588	0.00079932	0.75116	0.00038518	2.3099	0.0011845	512.7875804866565	107.12	0.71455	107.12	106.89	107.6	0					29	16	2	0	0	0	0.12365	1	12078	12078		90.777	16.802	1	1696700			19015	1029	15519	15541	21039	21039					0.0492232324043016
ILDDSHLLV	9	Unmodified	_ILDDSHLLV_					0	0	0		ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.78759765625	2	512.787307	1023.56006	-0.017962	-9.2106E-06	-0.45828	-0.000235	-0.47624	-0.00024421	512.7870225821379	109.44	2.2555	107.72	107.42	109.68	-1.7256					93	42	4	0	0	0	0.29717	1	10080	10080		63.306	8.53	1	341840			19016	1029	15519	15541	21040	21040					0.0492232324043016
ILDEAIYKV	9	Unmodified	_ILDEAIYKV_					0	0	0		nc|ENSG00000166578|Q96DY2-3|IQCD;nc|ENSG00000166578|Q96DY2-2|IQCD;ENSG00000166578|ENST00000416617|IQCD	nc|ENSG00000166578|Q96DY2-3|IQCD	nc|ENSG00000166578|Q96DY2-3|IQCD	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.7649536132812	2	532.305332	1062.59611	3.1621	0.0016832	-1.0691	-0.00056908	2.0931	0.0011141	532.3046082532485	97.375	0.60347	97.375	97.135	97.738	0					33	13	3	0	0	0	0.027461	1	10710	10710		49.442	3.4896	1	855010			19017	6695	15520	15542	21041	21041					0.06731780417271693
ILDEATIIKN	10	Unmodified	_ILDEATIIKN_					0	0	0		tr|A0A7D6ZH49|A0A7D6ZH49_9CLOTDHA2familyeffluxMFStransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_01470PE=3SV=1	tr|A0A7D6ZH49|A0A7D6ZH49_9CLOTDHA2familyeffluxMFStransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_01470PE=3SV=1	tr|A0A7D6ZH49|A0A7D6ZH49_9CLOTDHA2familyeffluxMFStransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_01470PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	565.3085327148438	2	565.326796	1128.63904	0.25394	0.00014356	2.679	0.0015145	2.9329	0.0016581	565.8277109934927	96.882	0.48889	95.923	95.678	96.167	-0.95857					14	9	3	0	0	0	0.026084	1	8777	8777		118.74	11.736	1	28571			19018	35565	15521	15543	21042	21042					0.07986550474720389
ILDEDTLIK	9	Unmodified	_ILDEDTLIK_					0	0	0			REV__tr|A0A553SKP0|A0A553SKP0_NIACICrp/FnrfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_19195PE=4SV=1	REV__tr|A0A553SKP0|A0A553SKP0_NIACICrp/FnrfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_19195PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	530.2976684570312	2	530.300247	1058.58594	-0.044695	-2.3702E-05	-2.7688	-0.0014683	-2.8135	-0.001492	530.2986629314781	30.396	1.3311	27.686	27.458	28.789	-2.7097					67	26	4	0	0	0	0.56889	1	868	868		35.618	0	1	398640	+		19019	30141	15522	15544	21043	21043					0.058991726920339715
ILDEEVNKL	9	Unmodified	_ILDEEVNKL_					0	0	0		tr|A0A553SNG4|A0A553SNG4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24425PE=4SV=1	tr|A0A553SNG4|A0A553SNG4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24425PE=4SV=1	tr|A0A553SNG4|A0A553SNG4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24425PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	536.7975463867188	2	536.797872	1071.58119	0.54428	0.00029217	-0.7658	-0.00041108	-0.22152	-0.00011891	536.7974015639339	77.895	1.3982	75.542	75.151	76.549	-2.3527					71	27	3	0	0	0	0.036687	1	4112	4112		129.68	0.26133	1	1043500			19020	33926	15523	15545	21044	21044					0.0482628854927043
ILDEEVNKL	9	Unmodified	_ILDEEVNKL_					0	0	0		tr|A0A553SNG4|A0A553SNG4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24425PE=4SV=1	tr|A0A553SNG4|A0A553SNG4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24425PE=4SV=1	tr|A0A553SNG4|A0A553SNG4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24425PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.7984008789062	2	536.797872	1071.58119	-0.78076	-0.00041911	0.59057	0.00031702	-0.19019	-0.00010209	536.7979899758632	78.581	1.4666	75.83	75.377	76.844	-2.7514					72	30	3	0	0	0	0.11471	1	6328	6328		93.195	2.8256	1	1102900			19021	33926	15523	15545	21045	21045					0.0482628854927043
ILDEHVQRV	9	Unmodified	_ILDEHVQRV_					0	0	0		ENST00000461023.5_1_16:343426-396314:-|nuORF;nc|ENSG00000103126|O15169-2|AXIN1;ENSG00000103126|ENST00000262320|AXIN1	ENST00000461023.5_1_16:343426-396314:-|nuORF	ENST00000461023.5_1_16:343426-396314:-|nuORF	MSMS	OvCa99_classI_Rep5	1	554.8096313476562	2	554.809105	1107.60366	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.436	1	55.436	54.936	55.936	0								0	0	0	0.07114	1	4535	4535		75.043	14.749	1				19022	2283	15524	15546	21046	21046					0.0541593273756007
ILDEVIFKL	9	Unmodified	_ILDEVIFKL_					0	0	0		ENST00000401788.2_1_6:27978946-27979378:+|nuORF;nc|ENSG00000173226|Q15051-3|IQCB1;IQCB1|p.E529Sfs*18|1|0.05|ENSG00000173226|chr3:121770557-121770558|-/AGCCTCCTGAGTAGCTGGGA|frameshift_variant;ENSG00000173226|ENST00000310864|IQCB1	ENST00000401788.2_1_6:27978946-27979378:+|nuORF	ENST00000401788.2_1_6:27978946-27979378:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	545.333251953125	2	545.33135	1088.64815	1.6747	0.00091327	0.58799	0.00032065	2.2627	0.0012339	545.3314409266687	135.85	0.61028	135.85	135.6	136.21	0					24	12	3	0	0	0	0.13504	1	15831	15831		87.696	18.91	1	172560			19023	7360	15525	15547	21047	21047					0.10736943831057033
ILDGHNIL	8	Unmodified	_ILDGHNIL_					0	0	0		nc|ENSG00000108433|O14653-3|GOSR2;ENSG00000108433|ENST00000640051|GOSR2;nc|ENSG00000108433|O14653-2|GOSR2	nc|ENSG00000108433|O14653-3|GOSR2	nc|ENSG00000108433|O14653-3|GOSR2	MULTI-MSMS	OvCa9_classI_Rep3	3	447.7562255859375	2	447.75581	893.497067	-0.88836	-0.00039777	0.11275	5.0485E-05	-0.77561	-0.00034728	447.7557112812271	91.834	1.8322	89.81	89.483	91.315	-2.0241					70	37	4	0	0	0	0.39692	1	5785	5785		88.643	8.7036	1	520650			19024	2655	15526	15548	21048	21048					0.04605802243054313
ILDIIRLSYI	10	Unmodified	_ILDIIRLSYI_					0	0	0			REV__ENSG00000184445|ENST00000333479|KNTC1;REV__KNTC1-FBXL12|1|fusion	REV__ENSG00000184445|ENST00000333479|KNTC1	MULTI-MSMS	OvCa99_classI_Rep5	1	407.2497253417969	3	406.920063	1217.73836	0.78159	0.00031805	-3.084	-0.0012549	-2.3024	-0.00093689	406.9187860329458	39.219	0.57449	39.219	38.972	39.547	0					30	12	4	0	0	0	0.64812	1	2302	2302		36.318	1.1394	1	2209900	+		19025	22428;28342	15527	15549	21049	21049					0.13819993159472688
ILDISEHTL	9	Unmodified	_ILDISEHTL_					0	0	0		ENSG00000006634|ENST00000265728|DBF4	ENSG00000006634|ENST00000265728|DBF4	ENSG00000006634|ENST00000265728|DBF4	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.7850341796875	2	520.784764	1039.55498	0.47273	0.00024619	-4.2372	-0.0022067	-3.7644	-0.0019605	520.7836828713865	140.65	1.8116	139.15	138.76	140.57	-1.4952					71	34	4	0	0	0	0.55588	1	13731	13731		37.159	5.2042	1	123170			19026	884	15528	15550	21050	21050					0.03678019377821329
ILDKIVQKV	9	Unmodified	_ILDKIVQKV_					0	0	0		nc|ENSG00000147364|Q8TCJ0|FBXO25;nc|ENSG00000147364|Q8TCJ0-3|FBXO25;ENSG00000147364|ENST00000350302|FBXO25	nc|ENSG00000147364|Q8TCJ0|FBXO25	nc|ENSG00000147364|Q8TCJ0|FBXO25	MULTI-MSMS	OvCa99_classI_Rep5	1	528.3463134765625	2	528.344792	1054.67503	2.4069	0.0012717	-0.23336	-0.0001233	2.1736	0.0011484	528.3445323904359	75.596	1.5949	75.596	75.407	77.002	0					86	39	3	0	0	0	0.011767	1	7554	7554		163.15	32.12	1	4389200			19027	15079	15529	15551	21051	21051					0.14988052442208755
ILDKKLEHLK	10	Unmodified	_ILDKKLEHLK_					0	0	0			REV__ENSG00000152767|ENST00000319562|FARP1	REV__ENSG00000152767|ENST00000319562|FARP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	412.9276123046875	3	412.927329	1235.76016	-0.45561	-0.00018813	-2.1307	-0.00087982	-2.5863	-0.0010679	412.926517070453	55.311	2.1325	52.016	51.648	53.781	-3.2944					136	41	5	0	0	0	0.63752	1	3461	3461		37.508	0	1	2139000	+		19028	20303	15530	15552	21052	21052					0.151707979080129
ILDKKVEKV	9	Unmodified	_ILDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.3421020507812	2	536.342249	1070.66995	-0.61417	-0.00032941	-1.3439	-0.00072082	-1.9581	-0.0010502	536.3419422040191	39.549	6.8719	39.549	38.972	45.844	0					393	156	6	0	0	0	0.014964	11	2344	2314;2344;2369;2399;2422;2447;2470;2496;2525;2549;2575		153.04	47.693	1	155850000			19029	1946	15531	15553	21053;21054;21055;21056;21057;21058;21059;21060;21061;21062;21063	21054					0.1374374857962266
ILDKKVEKV	9	Unmodified	_ILDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OvCa9_classI_Rep2	2	536.341796875	2	536.342249	1070.66995	-0.81148	-0.00043523	0.17235	9.2439E-05	-0.63913	-0.00034279	536.3422296756858	44.912	1.7946	42.202	41.851	43.646	-2.7097					101	35	4	0	0	0	0.094791	10	2584	2578;2584;2590;2596;2602;2609;2615;2622;2628;2635		98.582	28.936	1	971130			19030	1946	15531	15553	21064;21065;21066;21067;21068;21069;21070;21071;21072;21073	21065					0.1374374857962266
ILDKKVEKV	9	Unmodified	_ILDKKVEKV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.3438110351562	2	536.342249	1070.66995	-1.8848	-0.0010109	1.0581	0.00056752	-0.82671	-0.0004434	536.342793222513	45.138	2.6404	42.1	41.765	44.405	-3.0385					156	49	5	0	0	0	0.014964	7	2287	2277;2287;2300;2312;2324;2338;2350		153.04	38.687	1	3143800			19031	1946	15531	15553	21074;21075;21076;21077;21078;21079;21080	21075					0.1374374857962266
ILDLDVKIDV	10	Unmodified	_ILDLDVKIDV_					0	0	0		tr|A0A7D6VU01|A0A7D6VU01_9CLOTSpoVRfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05030PE=4SV=1	tr|A0A7D6VU01|A0A7D6VU01_9CLOTSpoVRfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05030PE=4SV=1	tr|A0A7D6VU01|A0A7D6VU01_9CLOTSpoVRfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05030PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.74462890625	2	571.836997	1141.65944	1.811	0.0010356	-0.29825	-0.00017055	1.5128	0.00086508	572.338679829293	128.54	0.18752	128.54	128.42	128.61	0					5	3	2	0	0	0	0.027118	1	14884	14884		32.812	14.55	1	18936			19032	35156	15532	15554	21081	21081					0.09427721134511557
ILDLIIKHV	9	Unmodified	_ILDLIIKHV_					0	0	0			REV__ENST00000534639.1_1_11:43284362-43284860:-|nuORF	REV__ENST00000534639.1_1_11:43284362-43284860:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	532.3452758789062	2	532.347335	1062.68012	-1.1269	-0.00059991	0.89196	0.00047483	-0.23494	-0.00012507	532.347799829167	138.02	1.078	136.94	136.58	137.66	-1.0858					40	21	3	0	0	0	0.40667	1	11271	11271		51.335	3.6781	1	36059	+		19033	27270	15533	15555	21082	21082					0.15128356304853696
ILDLLPVDL	9	Unmodified	_ILDLLPVDL_					0	0	0			REV__ENSG00000185875|ENST00000376356|THNSL1	REV__ENSG00000185875|ENST00000376356|THNSL1	MULTI-MSMS	OvCa99_classI_Rep5	1	505.81170654296875	2	505.810251	1009.60595	0.36665	0.00018545	-1.0035	-0.0005076	-0.63689	-0.00032214	505.8097648768816	162.48	0.32724	162.48	162.28	162.6	0					10	7	2	0	0	0	0.24951	1	19048	19048		68.787	17.451	1	57637	+		19034	22539	15534	15556	21083	21083					0.1015296842265343
ILDLPRTGNRK	11	Unmodified	_ILDLPRTGNRK_					0	0	0		ENST00000494186.1_1_7:99081675-99098383:+|nuORF;ENSG00000198556|ENST00000331410|ZNF789	ENST00000494186.1_1_7:99081675-99098383:+|nuORF	ENST00000494186.1_1_7:99081675-99098383:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8834838867188	2	641.883136	1281.75172	-3.6311	-0.0023307	2.7968	0.0017952	-0.8343	-0.00053552	641.8847801872174	153.39	4.0845	151.94	150.68	154.77	-1.4516					420	106	6	0	0	0	0.72479	1	15351	15351		18.262	0.89712	1	809780			19035	8827	15535	15557	21084	21084					0.12211243991396259
ILDPAEPTGDV	11	Unmodified	_ILDPAEPTGDV_					0	0	0		ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728|OAS2	ENSG00000111335|ENST00000392583|OAS2	ENSG00000111335|ENST00000392583|OAS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.7860107421875	2	563.784961	1125.55537	-0.55587	-0.00031339	1.2979	0.00073176	0.74208	0.00041837	563.785456444739	107.46	1.3858	105.58	105.28	106.66	-1.8785					54	27	3	0	0	0	0.64273	1	9822	9822		40.778	0.20554	1	251450			19036	2823	15536	15558	21085	21085					-0.002386056929935876
ILDPHVVLL	9	Unmodified	_ILDPHVVLL_					0	0	0		ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF	ENSG00000108559|ENST00000573584|NUP88	ENSG00000108559|ENST00000573584|NUP88	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.82098388671875	2	509.81841	1017.62227	-0.40336	-0.00020564	0.24299	0.00012388	-0.16037	-8.1758E-05	509.818396147904	123.54	1.1963	122.17	121.9	123.1	-1.3666					47	23	3	0	0	0	0.13154	1	11690	11690		88.643	11.796	1	110440			19037	2662	15537	15559	21086	21086					0.11416094379421793
ILDPPDQVQF	10	Unmodified	_ILDPPDQVQF_					0	0	0		nc|ENSG00000173531|P26927|MST1;ENSG00000173531|ENST00000449682|MST1;ENST00000492329.5_1_3:49721463-49723185:-|nuORF	nc|ENSG00000173531|P26927|MST1	nc|ENSG00000173531|P26927|MST1	MULTI-MSMS	OvCa99_classI_Rep5	1	586.8047485351562	2	586.303321	1170.59209	1.5868	0.00093036	-1.8406	-0.0010792	-0.25379	-0.0001488	586.3023635344985	126.53	0.95873	126.53	126.18	127.14	0					46	20	3	0	0	0	0.37436	1	14627	14627		71.877	0.58177	1	696080			19038	7385	15538	15560	21087	21087					0.013616909235679486
ILDPRPTII	9	Unmodified	_ILDPRPTII_					0	0	0		RNF115-GPHN|1|fusion;nc|ENSG00000171723|Q9NQX3|GPHN;ENSG00000171723|ENST00000478722|GPHN	RNF115-GPHN|1|fusion	RNF115-GPHN|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.3212890625	2	519.321317	1036.62808	-1.8278	-0.00094922	1.2458	0.00064697	-0.582	-0.00030225	519.321960155653	107.08	2.0153	105.2	104.75	106.76	-1.8785					100	39	5	0	0	0	0.030815	1	9747	9747		134.81	33.21	1	2715900			19039	7228	15539	15561	21088	21088					0.11123192891091094
ILDQDRLAL	9	Unmodified	_ILDQDRLAL_					0	0	0		ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.278564453125	2	528.806031	1055.59751	0.078205	4.1355E-05	2.175	0.0011501	2.2532	0.0011915	529.3093050435818	57.46	0.80347	57.46	57.18	57.984	0					26	18	2	0	0	0	0.027462	1	4872	4872		37.159	10.466	1	426050			19040	7185	15540	15562	21089	21089					0.07193414506014051
ILDQKINEV	9	Unmodified	_ILDQKINEV_					0	0	0		ENSG00000115758|ENST00000234111|ODC1;ENST00000446285.5_1_2:10584646-10585158:-|nuORF	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.3072509765625	2	536.305864	1070.59717	1.2512	0.00067101	-0.41694	-0.00022361	0.83423	0.0004474	536.3055917176774	74.617	2.5551	74.617	74.286	76.841	0					149	63	6	0	0	0	0.0077394	3	7369	7369;7396;7427		181.41	35.501	1	36625000			19041	3124	15541	15563	21090;21091;21092	21090					0.06469994786175448
ILDQKINEV	9	Unmodified	_ILDQKINEV_					0	0	0		ENSG00000115758|ENST00000234111|ODC1;ENST00000446285.5_1_2:10584646-10585158:-|nuORF	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	OvCa9_classI_Rep2	2	536.3087158203125	2	536.305864	1070.59717	-1.4535	-0.00077952	1.2924	0.0006931	-0.16113	-8.6414E-05	536.3062909762427	76.554	2.6008	74.7	73.638	76.239	-1.854					96	41	4	0	0	0	0.023079	3	6348	6335;6340;6348		143.37	25.563	1	794450			19042	3124	15541	15563	21093;21094;21095	21095					0.06469994786175448
ILDQKINEV	9	Unmodified	_ILDQKINEV_					0	0	0		ENSG00000115758|ENST00000234111|ODC1;ENST00000446285.5_1_2:10584646-10585158:-|nuORF	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	OvCa9_classI_Rep3	3	536.3036499023438	2	536.305864	1070.59717	0.2664	0.00014287	-3.0287	-0.0016243	-2.7623	-0.0014814	536.3039239372298	76.594	2.3055	74.223	73.825	76.13	-2.3715					97	44	3	0	0	0	0.010153	8	3953	3937;3953;3959;3965;3971;3978;3985;3993		168.26	37.227	1	3949400			19043	3124	15541	15563	21096;21097;21098;21099;21100;21101;21102;21103	21097					0.06469994786175448
ILDQKINEV	9	Unmodified	_ILDQKINEV_					0	0	0		ENSG00000115758|ENST00000234111|ODC1;ENST00000446285.5_1_2:10584646-10585158:-|nuORF	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.3060913085938	2	536.305864	1070.59717	-1.1216	-0.0006015	-0.42561	-0.00022825	-1.5472	-0.00082975	536.3054142768545	77.396	2.3048	74.58	74.048	76.353	-2.8165					121	47	5	0	0	0	0.014158	5	6188	6188;6199;6214;6226;6238		155.58	34.006	1	3840300			19044	3124	15541	15563	21104;21105;21106;21107;21108	21104					0.06469994786175448
ILDRIEMSH	9	Oxidation (M)	_ILDRIEM(Oxidation (M))SH_		ILDRIEM(1)SH		ILDRIEM(96)SH	0	0	1		tr|A0A7D7AEZ8|A0A7D7AEZ8_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04120PE=3SV=1	tr|A0A7D7AEZ8|A0A7D7AEZ8_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04120PE=3SV=1	tr|A0A7D7AEZ8|A0A7D7AEZ8_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04120PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	565.3085327148438	2	565.287148	1128.55974	0.23199	0.00013114	-0.45624	-0.00025791	-0.22425	-0.00012677	565.788227711249	96.891	0.78514	95.933	95.728	96.513	-0.95856					20	15	2	0	0	0	0.027303	1	8777	8777		96.19	16.739	1	31177			19045	36249	15542	15564	21109	21109		785			0.0006058024891899549
ILDSGIYRI	9	Unmodified	_ILDSGIYRI_					0	0	0		ENSG00000110756|ENST00000349215|HPS5;nc|ENSG00000110756|Q9UPZ3-2|HPS5	ENSG00000110756|ENST00000349215|HPS5	ENSG00000110756|ENST00000349215|HPS5	MULTI-MSMS	OvCa99_classI_Rep5	1	525.3046875	2	525.303124	1048.5917	2.2764	0.0011958	-0.6154	-0.00032327	1.661	0.00087254	525.3027041021292	101	1.3801	101	100.53	101.91	0					74	32	4	0	0	0	0.029147	2	11214	11214;11244		136.27	36.893	1	3940000			19046	2793	15543	15565	21110;21111	21110					0.06934315994362805
ILDSKTYKN	9	Unmodified	_ILDSKTYKN_					0	0	0		tr|A0A7D6ZVD5|A0A7D6ZVD5_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03645PE=4SV=1	tr|A0A7D6ZVD5|A0A7D6ZVD5_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03645PE=4SV=1	tr|A0A7D6ZVD5|A0A7D6ZVD5_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03645PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	541.3004150390625	2	541.298039	1080.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.41	1	105.41	104.91	105.91	0								0	0	0	0.16802	1	11839	11839		56.721	0	1				19047	35800	15544	15566	21112	21112					0.04445708269145143
ILDTRKYK	8	Unmodified	_ILDTRKYK_					0	0	0		tr|A0A553SQN6|A0A553SQN6_NIACIRecombinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07995PE=3SV=1	tr|A0A553SQN6|A0A553SQN6_NIACIRecombinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07995PE=3SV=1	tr|A0A553SQN6|A0A553SQN6_NIACIRecombinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07995PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.3182373046875	2	518.811116	1035.60768	0.42675	0.0002214	-3.3762	-0.0017516	-2.9495	-0.0015302	519.3119975386445	140.01	0.24335	140.01	139.92	140.17	0					6	4	2	0	0	0	0.028476	1	16357	16357		47.916	3.7988	1	22465			19048	34183	15545	15567	21113	21113					0.09130022231261137
ILDVLSSLR	9	Unmodified	_ILDVLSSLR_					0	0	0		ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;nc|ENSG00000144554|Q9BXW9-3|FANCD2	ENSG00000144554|ENST00000675286|FANCD2	ENSG00000144554|ENST00000675286|FANCD2	MULTI-MSMS	OvCa99_classI_Rep5	1	508.3106384277344	2	508.310949	1014.60735	1.4849	0.00075477	4.1682	0.0021188	5.6531	0.0028735	508.31285687679826	119.71	0.61367	119.71	119.52	120.14	0					27	14	3	0	0	0	0.27001	1	13737	13737		66.429	0	1	360210			19049	5157	15546	15568	21114	21114					0.10062602511425212
ILDVQKFLN	9	Unmodified	_ILDVQKFLN_					0	0	0			REV__ENSG00000125484|ENST00000372146|GTF3C4	REV__ENSG00000125484|ENST00000372146|GTF3C4	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3164672851562	2	545.318774	1088.623	-2.8527	-0.0015556	-0.96726	-0.00052747	-3.8199	-0.0020831	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.63422	1	11719	11719		27.882	1.1893	1	337600	+		19050	18727	15547	15569	21115	21115					0.08222889028479585
ILDVSNNNL	9	Unmodified	_ILDVSNNNL_					0	0	0		ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.2918395996094	2	501.266739	1000.51892	0.60622	0.00030388	-0.29401	-0.00014737	0.31222	0.0001565	501.26632349766584	66.849	0.95682	66.849	66.491	67.448	0					37	23	2	0	0	0	0.027462	1	6191	6191		19.997	5.1319	1	1269800			19051	4585	15548	15570	21116	21116					0.01868562200957058
ILEAPRTGVA	10	Unmodified	_ILEAPRTGVA_					0	0	0			REV__ENST00000434391.6_1_1:26758790-26759412:+|nuORF	REV__ENST00000434391.6_1_1:26758790-26759412:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.7999267578125	2	513.800749	1025.58694	0.45399	0.00023326	-3.4555	-0.0017754	-3.0015	-0.0015422	513.7987957920849	32.115	0.81847	29.42	28.786	29.605	-2.6954					76	29	3	0	0	0	0.74374	1	710	710		25.574	0.12388	1	87672	+		19052	25755	15549	15571	21117	21117					0.07517431851624679
ILEDGVSEL	9	Unmodified	_ILEDGVSEL_					0	0	0		tr|A0A7D6VPP3|A0A7D6VPP3_9CLOTendopeptidaseLaOS=ClostridiumintestinaleOX=36845GN=lonCPE=3SV=1	tr|A0A7D6VPP3|A0A7D6VPP3_9CLOTendopeptidaseLaOS=ClostridiumintestinaleOX=36845GN=lonCPE=3SV=1	tr|A0A7D6VPP3|A0A7D6VPP3_9CLOTendopeptidaseLaOS=ClostridiumintestinaleOX=36845GN=lonCPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.77508544921875	2	487.755672	973.496792	0.50482	0.00024623	-2.1812	-0.0010639	-1.6763	-0.00081764	487.75469309718807	141.24	0.40474	141.24	141.08	141.49	0					12	7	2	0	0	0	0.027433	1	16497	16497		42.396	0	1	24846			19053	34784	15550	15572	21118	21118					0.008983377325421316
ILEEMKVKSE	10	Unmodified	_ILEEMKVKSE_					0	0	0		nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	nc|ENSG00000177200|Q3L8U1-2|CHD9	MULTI-SECPEP	OvCa99_classI_Rep5	1	603.7889404296875	2	603.325939	1204.63732	2.3264	0.0014036	3.8719	0.002336	6.1983	0.0037396	603.8313458527265	76.954	0.48732	76.954	76.639	77.126	0					29	11	4	0	0	0	0.027006	1	7722	7722		13.454	0.64233	1	817220			19054	7667	15551	15573	21119	21119					0.04319173394446807
ILEEQQKLE	9	Unmodified	_ILEEQQKLE_					0	0	0			REV__ENSG00000257594|ENST00000529983|GALNT4	REV__ENSG00000257594|ENST00000529983|GALNT4	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.3648681640625	2	565.308603	1128.60265	1.4664	0.00082895	-4.3053	-0.0024338	-2.8389	-0.0016049	565.3068315254868	105.55	0.91908	105.55	105.22	106.14	0					28	20	2	0	0	0	0.027441	1	11869	11869		49.442	0	1	206850	+		19055	23547	15552	15574	21120	21120					0.04349673578008151
ILEEQSHIL	9	Unmodified	_ILEEQSHIL_					0	0	0			REV__KIF21B|p.H1503Afs*22|1|0.21|ENSG00000116852|chr1:200975607-200975608|-/G|frameshift_variant	REV__KIF21B|p.H1503Afs*22|1|0.21|ENSG00000116852|chr1:200975607-200975608|-/G|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.3776245117188	2	541.298039	1080.58152	-0.48573	-0.00026292	-2.7202	-0.0014725	-3.206	-0.0017354	541.2989300505441	103.53	1.5623	103.53	102.98	104.54	0					52	36	3	0	0	0	0.027433	1	11689	11689		74.255	40.082	1	651920	+		19056	18323	15553	15575	21121	21121					0.04445708269145143
ILEGENAVEEV	11	Unmodified	_ILEGENAVEEV_					0	0	0		tr|A0A7D6ZXQ9|A0A7D6ZXQ9_9CLOTnucleoside-diphosphatekinaseOS=ClostridiumintestinaleOX=36845GN=ndkPE=3SV=1	tr|A0A7D6ZXQ9|A0A7D6ZXQ9_9CLOTnucleoside-diphosphatekinaseOS=ClostridiumintestinaleOX=36845GN=ndkPE=3SV=1	tr|A0A7D6ZXQ9|A0A7D6ZXQ9_9CLOTnucleoside-diphosphatekinaseOS=ClostridiumintestinaleOX=36845GN=ndkPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	601.3056030273438	2	601.300975	1200.5874	1.4821	0.00089119	1.3604	0.00081802	2.8425	0.0017092	601.30219782033	149.77	2.5731	149.77	149.4	151.97	0					182	51	8	0	0	0	0.34051	1	17704	17704		65.465	7.2355	1	11852000			19057	35889	15554	15576	21122	21122					-0.00487238009873181
ILEGYQAQV	9	Unmodified	_ILEGYQAQV_					0	0	0		ENST00000338302.7_1_1:156884783-156884978:+|nuORF	ENST00000338302.7_1_1:156884783-156884978:+|nuORF	ENST00000338302.7_1_1:156884783-156884978:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	510.773193359375	2	510.771657	1019.52876	1.0498	0.0005362	2.2172	0.0011325	3.267	0.0016687	510.77230472182333	139.44	0.84814	139.44	139.17	140.02	0					19	17	2	0	0	0	0.59259	1	16296	16296		32.812	1.2826	1	82851			19058	10537	15555	15577	21123	21123					0.019777502063334396
ILEKQLPEL	9	Unmodified	_ILEKQLPEL_					0	0	0			REV__ENSG00000176731|ENST00000619594|RBIS	REV__ENSG00000176731|ENST00000619594|RBIS	MULTI-MSMS	OvCa99_classI_Rep5	1	541.8277587890625	2	541.826432	1081.63831	1.2795	0.00069328	-2.8643	-0.001552	-1.5848	-0.00085869	541.8267854263936	109.76	1.3438	109.76	109.46	110.8	0					65	29	4	0	0	0	0.053172	1	12445	12445		116.9	8.8161	1	822220	+		19059	21966	15556	15578	21124	21124					0.10075755825664601
ILEKQLPEL	9	Unmodified	_ILEKQLPEL_					0	0	0			REV__ENSG00000176731|ENST00000619594|RBIS	REV__ENSG00000176731|ENST00000619594|RBIS	MULTI-MATCH	OvCa9_classI_Rep2	2		2	541.826432	1081.63831	-0.46334	-0.00025105	1.5272	0.00082749	1.0639	0.00057644	542.32921657889	109.69	1.1374	109.51	109.12	110.25	-0.17237	0.0074949	0.0023269	NaN	116.9	55	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43721	+		19060	21966	15556	15578							0.10075755825664601
ILEKQLPEL	9	Unmodified	_ILEKQLPEL_					0	0	0			REV__ENSG00000176731|ENST00000619594|RBIS	REV__ENSG00000176731|ENST00000619594|RBIS	MULTI-MATCH	OvCa9_classI_Rep3	3		2	541.826432	1081.63831	0.81107	0.00043946	-1.0608	-0.00057475	-0.24968	-0.00013528	541.8256180924203	110.39	0.88454	109.25	108.98	109.86	-1.1444	-0.25822	-0.00047752	NaN	116.9	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41958	+		19061	21966	15556	15578							0.10075755825664601
ILEKVSQIIR	10	Unmodified	_ILEKVSQIIR_					0	0	0			REV__tr|A0A7D7A1K0|A0A7D7A1K0_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04515PE=4SV=1	REV__tr|A0A7D7A1K0|A0A7D7A1K0_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04515PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.2506103515625	3	400.255446	1197.74451	1.0117	0.00040493	2.7342	0.0010944	3.7459	0.0014993	400.2565391613294	33.608	0.53352	33.608	33.483	34.017	0					20	10	3	0	0	0	0.026881	1	1580	1580		37.508	9.4267	1	133250	+		19062	32495	15557	15579	21125	21125					0.15354511390978587
ILELGTTIN	9	Unmodified	_ILELGTTIN_					0	0	0			REV__tr|A0A553SJU5|A0A553SJU5_NIACITyrosine--tRNAligaseOS=NialliacirculansOX=1397GN=tyrSPE=3SV=1	REV__tr|A0A553SJU5|A0A553SJU5_NIACITyrosine--tRNAligaseOS=NialliacirculansOX=1397GN=tyrSPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	487.2870788574219	2	487.281857	972.549162	-0.18512	-9.0205E-05	0.57376	0.00027958	0.38864	0.00018938	487.2819497090672	105.1	0.61461	105.1	104.79	105.4	0					33	13	3	0	0	0	0.068524	1	11797	11797		108.09	1.08	1	751300	+		19063	30045	15558	15580	21126	21126					0.0617892086613665
ILELREELP	9	Unmodified	_ILELREELP_					0	0	0			REV__tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	REV__tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	557.3111572265625	2	556.321514	1110.62847	1.3324	0.00074124	-2.0166	-0.0011219	-0.68424	-0.00038066	556.3202735200227	112.97	0.19691	112.84	112.72	112.92	-0.12174					5	3	2	0	0	0	0.027462	1	10693	10693		53.351	0	1	7706.8	+		19064	31876	15559	15581	21127	21127					0.07758567820269491
ILELSDLLKR	10	Unmodified	_ILELSDLLKR_					0	0	0		tr|A0A553STY2|A0A553STY2_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05845PE=4SV=1	tr|A0A553STY2|A0A553STY2_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05845PE=4SV=1	tr|A0A553STY2|A0A553STY2_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05845PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	600.2957763671875	2	600.371538	1198.72852	1.1793	0.000708	-1.2417	-0.00074551	-0.062471	-3.7506E-05	600.3709827662065	116.73	1.2384	115.69	115.39	116.63	-1.0414					30	24	2	0	0	0	0.027147	1	8696	8696		29.15	13.508	1	17031			19065	34549	15560	15582	21128	21128					0.1371080515407357
ILENNLLSPIL	11	Unmodified	_ILENNLLSPIL_					0	0	0		tr|A0A7D6W0S8|A0A7D6W0S8_9CLOTDUF1015domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00685PE=4SV=1	tr|A0A7D6W0S8|A0A7D6W0S8_9CLOTDUF1015domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00685PE=4SV=1	tr|A0A7D6W0S8|A0A7D6W0S8_9CLOTDUF1015domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00685PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8701782226562	2	619.871371	1237.72819	-3.8587	-0.0023919	0.76872	0.00047651	-3.09	-0.0019154	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.72244	1	15549	15549		21.96	1.013	1	492670			19066	35388	15561	15583	21129	21129					0.11883385434225602
ILEPVELAGV	10	Unmodified	_ILEPVELAGV_					0	0	0		tr|A0A7D6VRK4|A0A7D6VRK4_9CLOTDNAligaseOS=ClostridiumintestinaleOX=36845GN=ligAPE=3SV=1	tr|A0A7D6VRK4|A0A7D6VRK4_9CLOTDNAligaseOS=ClostridiumintestinaleOX=36845GN=ligAPE=3SV=1	tr|A0A7D6VRK4|A0A7D6VRK4_9CLOTDNAligaseOS=ClostridiumintestinaleOX=36845GN=ligAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	520.3045654296875	2	520.305332	1038.59611	0.63202	0.00032884	0.86158	0.00044829	1.4936	0.00077713	520.3057007501754	155.35	1.6213	155.35	154.42	156.04	0					87	31	4	0	0	0	0.43592	1	18230	18230		63.306	6.5852	1	1730900			19067	34938	15562	15584	21130	21130					0.0783578041725832
ILEQSGDTIT	10	Unmodified	_ILEQSGDTIT_					0	0	0			REV__ENST00000478753.4_3_16:30455599-30455665:-|nuORF	REV__ENST00000478753.4_3_16:30455599-30455665:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	537.8048095703125	2	538.777136	1075.53972	0.78807	0.00042459	-0.049846	-2.6856E-05	0.73822	0.00039774	539.2783322656675	73.367	1.139	70.879	70.482	71.62	-2.4873					48	22	3	0	0	0	0.027056	1	3650	3650		20.947	0	1	152050	+		19068	26422	15563	15585	21131	21131					0.004971077899426746
ILERAEPD	8	Unmodified	_ILERAEPD_					0	0	0			REV__ENSG00000005108|ENST00000423059|THSD7A	REV__ENSG00000005108|ENST00000423059|THSD7A	MULTI-MSMS	OvCa9_classI_Rep2	2	471.7474365234375	2	471.748182	941.481811	-0.87595	-0.00041323	0.52109	0.00024582	-0.35487	-0.00016741	471.7482986041781	116.14	1.3366	116.03	115.69	117.02	-0.11777					59	26	3	0	0	0	0.74679	1	11094	11094		28.254	1.4582	1	260110	+		19069	16392	15564	15586	21132	21132					0.008728906551823457
ILERAEPD	8	Unmodified	_ILERAEPD_					0	0	0			REV__ENSG00000005108|ENST00000423059|THSD7A	REV__ENSG00000005108|ENST00000423059|THSD7A	MULTI-MSMS	OvCa9_classI_Rep3	3	471.74810791015625	2	471.748182	941.481811	-0.24714	-0.00011659	-0.23144	-0.00010918	-0.47857	-0.00022577	471.7479787376128	116.81	1.2877	115.76	115.49	116.78	-1.0414					55	25	3	0	0	0	0.75241	1	8767	8767		25.45	0.93098	1	307460	+		19070	16392	15564	15586	21133	21133					0.008728906551823457
ILESGNHYEL	10	Unmodified	_ILESGNHYEL_					0	0	0		tr|A0A7D6W0S1|A0A7D6W0S1_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00970PE=4SV=1	tr|A0A7D6W0S1|A0A7D6W0S1_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00970PE=4SV=1	tr|A0A7D6W0S1|A0A7D6W0S1_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00970PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.241943359375	2	587.790578	1173.5666	0.53404	0.0003139	4.4657	0.0026249	4.9998	0.0029388	587.7932802542866	160.06	0.34995	160.06	159.96	160.31	0					9	6	2	0	0	0	0.026624	1	18787	18787		54.722	0	1	46759			19071	35387	15565	15587	21134	21134					-0.013237835988320512
ILESPKPLD	9	Unmodified	_ILESPKPLD_					0	0	0		ENSG00000248385|ENST00000432826|TARM1;nc|ENSG00000248385|B6A8C7-2|TARM1	ENSG00000248385|ENST00000432826|TARM1	ENSG00000248385|ENST00000432826|TARM1	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.341064453125	2	506.289682	1010.56481	-0.18423	-9.3272E-05	0.67855	0.00034354	0.49432	0.00025027	506.29000340204703	133.83	0.54224	133.6	133.31	133.85	-0.22696					14	10	2	0	0	0	0.027441	1	13227	13227		32.812	0	1	15539			19072	9407	15566	15588	21135	21135					0.059952073831937014
ILFATEAGVV	10	Unmodified	_ILFATEAGVV_					0	0	0			REV__nc|ENSG00000266200|P54317|PNLIPRP2	REV__nc|ENSG00000266200|P54317|PNLIPRP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.768798828125	2	510.292225	1018.5699	1.0031	0.00051189	-1.9152	-0.00097731	-0.91207	-0.00046542	510.79379385033934	81.015	0.13022	81.015	80.949	81.08	0					4	2	2	0	0	0	0.026822	1	8336	8336		30.504	17.05	1	78151	+		19073	29187	15567	15589	21136	21136					0.06135511245804537
ILFDNKDIT	9	Unmodified	_ILFDNKDIT_					0	0	0		tr|A0A553SFN6|A0A553SFN6_NIACINickelimportsystemATP-bindingproteinNikEOS=NialliacirculansOX=1397GN=CEQ21_09105PE=3SV=1	tr|A0A553SFN6|A0A553SFN6_NIACINickelimportsystemATP-bindingproteinNikEOS=NialliacirculansOX=1397GN=CEQ21_09105PE=3SV=1	tr|A0A553SFN6|A0A553SFN6_NIACINickelimportsystemATP-bindingproteinNikEOS=NialliacirculansOX=1397GN=CEQ21_09105PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.3079833984375	2	539.792589	1077.57063	1.2407	0.0006697	-1.1297	-0.00060982	0.11092	5.9873E-05	539.7918059432902	129.76	1.1377	128.65	128.34	129.48	-1.1121					32	22	2	0	0	0	0.027462	1	10340	10340		27.882	9.5578	1	18632			19074	33056	15568	15590	21137	21137					0.03494305894832905
ILFFGQITL	9	Unmodified	_ILFFGQITL_					0	0	0			REV__ENSG00000213625|ENST00000371065|LEPROT	REV__ENSG00000213625|ENST00000371065|LEPROT	MULTI-MSMS	OvCa9_classI_Rep2	2	526.3143310546875	2	526.312961	1050.61137	0.087693	4.6154E-05	3.0503	0.0016054	3.138	0.0016515	526.3143544270938	124.13	1.5768	123.9	123.24	124.82	-0.23193					93	31	4	0	0	0	0.38529	1	12048	12048		53.351	2.016	1	220960	+		19075	23262	15569	15591	21138	21138					0.08808692005140983
ILFFHKEN	8	Unmodified	_ILFFHKEN_					0	0	0		tr|A0A553ST07|A0A553ST07_NIACICrp/FnrfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03975PE=4SV=1	tr|A0A553ST07|A0A553ST07_NIACICrp/FnrfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03975PE=4SV=1	tr|A0A553ST07|A0A553ST07_NIACICrp/FnrfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03975PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.8145751953125	2	524.284734	1046.55492	-0.25955	-0.00013608	3.3278	0.0017447	3.0682	0.0016086	524.7891563090861	60.987	0.30005	57.557	57.444	57.744	-3.43					7	5	2	0	0	0	0.028476	1	4167	4167		73.975	2.679	1	24020			19076	34446	15570	15592	21139	21139					0.03350064168489553
ILFFTLENI	9	Unmodified	_ILFFTLENI_					0	0	0		tr|A0A553SNE6|A0A553SNE6_NIACIMultidrugexportproteinMepAOS=NialliacirculansOX=1397GN=CEQ21_24230PE=3SV=1	tr|A0A553SNE6|A0A553SNE6_NIACIMultidrugexportproteinMepAOS=NialliacirculansOX=1397GN=CEQ21_24230PE=3SV=1	tr|A0A553SNE6|A0A553SNE6_NIACIMultidrugexportproteinMepAOS=NialliacirculansOX=1397GN=CEQ21_24230PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	555.315185546875	2	555.3157	1108.61685	-0.48587	-0.00026981	-0.10912	-6.0599E-05	-0.59499	-0.00033041	555.3155000108198	39.566	0.63897	39.566	39.332	39.971	0					32	14	3	0	0	0	0.14998	1	2360	2360		84.916	18.486	1	671210			19077	33919	15571	15593	21140	21140					0.06688370796950949
ILFGHENRV	9	Unmodified	_ILFGHENRV_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MULTI-MSMS	OvCa99_classI_Rep5	1	542.7999877929688	2	542.79854	1083.58253	-0.25125	-0.00013638	-0.45467	-0.00024679	-0.70592	-0.00038317	542.7980787908435	61.114	1.1392	61.114	60.73	61.869	0					61	25	4	0	0	0	0.1944	1	5358	5358		77.318	19.088	1	3717100			19078	1412	15572	15594	21141	21141					0.04407967428710435
ILFGYSSH	8	Unmodified	_ILFGYSSH_					0	0	0			REV__ENST00000472067.1_1_7:142991698-142998016:+|nuORF	REV__ENST00000472067.1_1_7:142991698-142998016:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	461.73675537109375	2	462.23471	922.454868	0.82963	0.00038348	3.274	0.0015134	4.1037	0.0018969	462.2361931889339	66.972	0.84077	66.972	66.372	67.212	0					25	20	2	0	0	0	0.028476	1	6247	6247		20.482	0	1	616970	+		19079	26302	15573	15595	21142	21142					-0.00946173165334585
ILFHEALK	8	Unmodified	_ILFHEALK_					0	0	0		ENST00000389045.7_1_2:230672980-230673052:-|nuORF	ENST00000389045.7_1_2:230672980-230673052:-|nuORF	ENST00000389045.7_1_2:230672980-230673052:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.78857421875	2	485.789653	969.564752	-0.19391	-9.4198E-05	-4.1779	-0.0020296	-4.3718	-0.0021238	485.7874489405498	76.424	1.7684	73.485	73.128	74.896	-2.9389					74	36	4	0	0	0	0.36941	1	6063	6063		94.006	6.31	1	780750			19080	11194	15574	15596	21143	21143					0.07875252173835179
ILFHEALK	8	Unmodified	_ILFHEALK_					0	0	0		ENST00000389045.7_1_2:230672980-230673052:-|nuORF	ENST00000389045.7_1_2:230672980-230673052:-|nuORF	ENST00000389045.7_1_2:230672980-230673052:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	485.789653	969.564752	-0.4927	-0.00023935	-4.167	-0.0020243	-4.6597	-0.0022636	485.78749732472454	75.466	2.2842	73.612	72.546	74.83	-1.854	0.063119	3.699E-06	NaN	94.006	77	43	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	287890			19081	11194	15574	15596							0.07875252173835179
ILFIKRFII	9	Unmodified	_ILFIKRFII_					0	0	0		nc|ENSG00000132958|Q6XPS3-6|TPTE2;nc|ENSG00000132958|Q6XPS3-4|TPTE2;nc|ENSG00000132958|Q6XPS3-5|TPTE2;nc|ENSG00000132958|Q6XPS3-3|TPTE2;nc|ENSG00000132958|Q6XPS3-2|TPTE2;nc|ENSG00000132958|Q6XPS3-7|TPTE2;ENSG00000132958|ENST00000697147|TPTE2	nc|ENSG00000132958|Q6XPS3-6|TPTE2	nc|ENSG00000132958|Q6XPS3-6|TPTE2	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.2810668945312	2	581.88917	1161.76379	-0.66688	-0.00038805	-1.8791	-0.0010934	-2.546	-0.0014815	581.8881456029354	41.21	0.666	41.21	40.754	41.42	0					22	14	2	0	0	0	0.027462	1	2520	2520		12.959	0	1	209260			19082	4187	15575	15597	21144	21144					0.18937512472552953
ILFINSFKYW	10	Unmodified	_ILFINSFKYW_					0	0	0			REV__nc|ENSG00000144285|P35498-3|SCN1A	REV__nc|ENSG00000144285|P35498-3|SCN1A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	444.2643737792969	3	444.244658	1329.71214	0.12804	5.6883E-05	2.4518	0.0010892	2.5799	0.0011461	444.2455520318274	59.312	1.033	55.92	55.705	56.738	-3.392					29	20	2	0	0	0	0.027193	1	4012	4012		16.717	3.7599	1	88502	+		19083	19900	15576	15598	21145	21145					0.060477239880128764
ILFIVAIGVL	10	Unmodified	_ILFIVAIGVL_					0	0	0			REV__tr|A0A7D6VQX9|A0A7D6VQX9_9CLOTCobalttransporterCbiMOS=ClostridiumintestinaleOX=36845GN=cbiMPE=4SV=1	REV__tr|A0A7D6VQX9|A0A7D6VQX9_9CLOTCobalttransporterCbiMOS=ClostridiumintestinaleOX=36845GN=cbiMPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.3070068359375	2	529.354628	1056.6947	1.3952	0.00073854	-3.8579	-0.0020422	-2.4627	-0.0013036	529.350905798429	103.16	0.32957	103.16	102.93	103.26	0					9	7	2	0	0	0	0.026578	1	11490	11490		54.765	19.564	1	143790	+		19084	31368	15577	15599	21146	21146					0.16862428452986933
ILFKSIFEV	9	Unmodified	_ILFKSIFEV_					0	0	0		ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	MULTI-MSMS	OvCa99_classI_Rep5	1	548.3291015625	2	548.326068	1094.63758	1.6825	0.00092257	0.99847	0.00054749	2.681	0.0014701	548.3264441138725	134.54	1.8681	134.54	134.2	136.07	0					76	40	3	0	0	0	0.025955	2	15641	15641;15664		139.97	49.601	1	890890			19085	5635	15578	15600	21147;21148	21147					0.09404961176619508
ILFKVGIA	8	Unmodified	_ILFKVGIA_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-MSMS	OvCa99_classI_Rep5	1	430.7855224609375	2	430.783839	859.553125	2.6232	0.00113	0.03069	1.3221E-05	2.6539	0.0011433	430.7837208892506	96.482	1.269	96.482	96.253	97.522	0					79	29	4	0	0	0	0.57589	1	10588	10588		69.093	6.1145	1	4396000	+		19086	17764	15579	15601	21149	21149					0.1177305515052467
ILFLCRFLTC	10	Unmodified	_ILFLCRFLTC_					0	0	0			REV__nc|ENSG00000165186|Q96NR3-2|PTCHD1	REV__nc|ENSG00000165186|Q96NR3-2|PTCHD1	MULTI-SECPEP	OvCa9_classI_Rep2	2	614.7388305664062	2	614.83268	1227.65081	-1.9086	-0.0011735	-2.9386	-0.0018067	-4.8472	-0.0029802	614.8309189902965	118.18	0.94406	118.03	117.54	118.48	-0.14755					27	18	2	0	0	0	0.028155	1	11379	11379		116.9	23.708	1	27472	+		19087	21066	15580	15602	21150	21150					0.0460875269270673
ILFLFFLN	8	Unmodified	_ILFLFFLN_					0	0	0		ENST00000434116.6_1_15:65903875-65903989:+|nuORF	ENST00000434116.6_1_15:65903875-65903989:+|nuORF	ENST00000434116.6_1_15:65903875-65903989:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	513.804931640625	2	513.804771	1025.59499	0.70534	0.00036241	-3.163	-0.0016252	-2.4577	-0.0012628	513.8029994184446	151.51	1.5289	151.51	151.15	152.67	0					67	34	4	0	0	0	0.72922	1	17761	17761		37.028	0	1	547420			19088	11835	15581	15603	21151	21151					0.0832161083903884
ILFLFGGIF	9	Unmodified	_ILFLFGGIF_					0	0	0		tr|A0A553SQG8|A0A553SQG8_NIACIYbfB/YjiJfamilyMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_07620PE=4SV=1	tr|A0A553SQG8|A0A553SQG8_NIACIYbfB/YjiJfamilyMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_07620PE=4SV=1	tr|A0A553SQG8|A0A553SQG8_NIACIYbfB/YjiJfamilyMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_07620PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	513.803466796875	2	513.804771	1025.59499	0.70534	0.00036241	-3.163	-0.0016252	-2.4577	-0.0012628	513.8029994184446	151.51	1.5289	151.51	151.15	152.67	0					67	34	4	0	0	0	0.61768	1	17716	17716		29.842	0	1	547420			19089	34160	15582	15604	21152	21152					0.08321610839016103
ILFLFPRDV	9	Unmodified	_ILFLFPRDV_					0	0	0			REV__ENSG00000099937|ENST00000215727|SERPIND1	REV__ENSG00000099937|ENST00000215727|SERPIND1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	560.81640625	2	560.331685	1118.64882	1.4798	0.00082917	-0.67619	-0.00037889	0.80358	0.00045027	560.3315530940963	115.1	0.30421	113.7	113.57	113.87	-1.3977					9	5	2	0	0	0	0.027462	1	10703	10703		33.516	0	1	13644	+	+	19090	17342	15583	15605	21153	21153					0.09423783270744934
ILFLFSSLMH	10	Unmodified	_ILFLFSSLMH_					0	0	0		ENST00000559217.1_1_15:80469766-80478548:+|nuORF	ENST00000559217.1_1_15:80469766-80478548:+|nuORF	ENST00000559217.1_1_15:80469766-80478548:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	604.3338012695312	2	604.330827	1206.6471	1.4365	0.0008681	3.282	0.0019834	4.7185	0.0028515	604.3327443764483	146.08	0.64899	146.08	145.73	146.38	0					32	12	3	0	0	0	0.58282	1	17097	17097		44.117	4.864	1	244610			19091	13715	15584	15606	21154	21154					0.05204406190478039
ILFLQFTLII	10	Unmodified	_ILFLQFTLII_					0	0	0			REV__ENST00000513762.2_1_4:2909397-2910421:+|nuORF	REV__ENST00000513762.2_1_4:2909397-2910421:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	611.8137817382812	2	610.886293	1219.75803	2.6914	0.0016441	-3.0423	-0.0018585	-0.35089	-0.00021435	610.884456681346	89.109	0.71333	89.109	88.843	89.556	0					26	17	2	0	0	0	0.027021	1	9490	9490		21.96	0	1	329940	+		19092	26979	15585	15607	21155	21155					0.15694369170250866
ILFLVITTSI	10	Unmodified	_ILFLVITTSI_					0	0	0		tr|A0A7D6VXH3|A0A7D6VXH3_9CLOTCDP-alcoholphosphatidyltransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08635PE=3SV=1	tr|A0A7D6VXH3|A0A7D6VXH3_9CLOTCDP-alcoholphosphatidyltransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08635PE=3SV=1	tr|A0A7D6VXH3|A0A7D6VXH3_9CLOTCDP-alcoholphosphatidyltransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08635PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.763671875	2	560.354825	1118.6951	-0.16702	-9.3593E-05	-2.5233	-0.0014139	-2.6903	-0.0015075	560.3533628983496	64.3	0.37114	64.3	64.132	64.503	0					17	8	3	0	0	0	0.027084	1	5857	5857		17.365	0.89182	1	315430			19093	35281	15586	15608	21156	21156					0.14049803382158643
ILFLVVDTH	9	Unmodified	_ILFLVVDTH_					0	0	0			REV__nc|ENSG00000106013|Q92527-2|ANKRD7	REV__nc|ENSG00000106013|Q92527-2|ANKRD7	MULTI-MSMS	OvCa9_classI_Rep2	2	528.80810546875	2	528.808042	1055.60153	-2.2617	-0.001196	2.3099	0.0012215	0.048298	2.5541E-05	528.8089774590135	143.19	0.88931	142.96	142.61	143.5	-0.22696					33	17	3	0	0	0	0.34496	1	14394	14394		57.811	7.7867	1	25849	+		19094	17774	15587	15609	21157	21157					0.075955039997325
ILFLYVLYK	9	Unmodified	_ILFLYVLYK_					0	0	0		tr|A0A7D7A1C1|A0A7D7A1C1_9CLOTIronABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03555PE=3SV=1	tr|A0A7D7A1C1|A0A7D7A1C1_9CLOTIronABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03555PE=3SV=1	tr|A0A7D7A1C1|A0A7D7A1C1_9CLOTIronABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03555PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	587.2951049804688	2	586.359911	1170.70527	-1.7427	-0.0010218	0.48775	0.000286	-1.2549	-0.00073585	586.3595373647909	118.64	0.54813	118.5	118.18	118.73	-0.14755					12	10	2	0	0	0	0.027462	1	11409	11409		37.159	23.022	1	9990.4			19095	36033	15588	15610	21158	21158					0.12674411107400374
ILFMKITKV	9	Unmodified	_ILFMKITKV_					0	0	0			REV__ENSG00000183150|ENST00000651487|GPR19	REV__ENSG00000183150|ENST00000651487|GPR19	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.82177734375	2	546.846113	1091.67767	-0.45008	-0.00024612	3.1229	0.0017077	2.6728	0.0014616	546.8477011074664	33.473	0.19861	33.473	33.384	33.583	0					5	3	2	0	0	0	0.027462	1	1536	1536		14.137	10.978	1	22243	+		19096	22344	15589	15611	21159	21159					0.13550184575524327
ILFMTITIK	9	Oxidation (M)	_ILFM(Oxidation (M))TITIK_		ILFM(1)TITIK		ILFM(79)TITIK	0	0	1		tr|A0A553SKF7|A0A553SKF7_NIACIYrzIfamilysmallproteinOS=NialliacirculansOX=1397GN=CEQ21_18775PE=4SV=1	tr|A0A553SKF7|A0A553SKF7_NIACIYrzIfamilysmallproteinOS=NialliacirculansOX=1397GN=CEQ21_18775PE=4SV=1	tr|A0A553SKF7|A0A553SKF7_NIACIYrzIfamilysmallproteinOS=NialliacirculansOX=1397GN=CEQ21_18775PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	548.330810546875	2	548.327753	1094.64095	2.1294	0.0011676	3.168	0.0017371	5.2974	0.0029047	548.3294009172746	98.746	0.85917	98.746	98.376	99.236	0					55	20	4	0	0	0	0.18193	1	10888	10888		79.451	7.5735	1	11646000			19097	33611	15590	15612	21160	21160		741			0.09741887958944062
ILFMTITIK	9	Unmodified	_ILFMTITIK_					0	0	0		tr|A0A553SKF7|A0A553SKF7_NIACIYrzIfamilysmallproteinOS=NialliacirculansOX=1397GN=CEQ21_18775PE=4SV=1	tr|A0A553SKF7|A0A553SKF7_NIACIYrzIfamilysmallproteinOS=NialliacirculansOX=1397GN=CEQ21_18775PE=4SV=1	tr|A0A553SKF7|A0A553SKF7_NIACIYrzIfamilysmallproteinOS=NialliacirculansOX=1397GN=CEQ21_18775PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3317260742188	2	540.330296	1078.64604	0.34656	0.00018726	-0.55993	-0.00030255	-0.21337	-0.00011529	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.55588	2	13523	13523;13666		37.159	6.5047	1	342200			19098	33611	15590	15613	21161;21162	21161					0.1098619182157563
ILFNIKLGN	9	Unmodified	_ILFNIKLGN_					0	0	0			REV__ENST00000370689.6_1_1:84701395-84701596:+|nuORF	REV__ENST00000370689.6_1_1:84701395-84701596:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	516.31396484375	2	516.316035	1030.61752	0.99547	0.00051397	1.3241	0.00068365	2.3196	0.0011976	516.3162844512433	124.64	1.0102	124.64	124.19	125.2	0					56	22	4	0	0	0	0.34496	1	14381	14381		57.811	4.4598	1	366350	+		19099	24967	15591	15614	21163	21163					0.10343210236646883
ILFNIKLGN	9	Unmodified	_ILFNIKLGN_					0	0	0			REV__ENST00000370689.6_1_1:84701395-84701596:+|nuORF	REV__ENST00000370689.6_1_1:84701395-84701596:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	516.316035	1030.61752	0.66495	0.00034332	-0.19579	-0.00010109	0.46916	0.00024224	516.3153661147624	125.23	0.79106	125	124.66	125.45	-0.23589	0.17669	-0.0011648	NaN	57.811	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17111	+		19100	24967	15591	15614							0.10343210236646883
ILFNRVLGV	9	Unmodified	_ILFNRVLGV_					0	0	0		ENSG00000116711|ENST00000367466|PLA2G4A	ENSG00000116711|ENST00000367466|PLA2G4A	ENSG00000116711|ENST00000367466|PLA2G4A	MULTI-MSMS	OvCa9_classI_Rep2	2	515.82177734375	2	515.824027	1029.6335	-1.3573	-0.00070015	1.7741	0.00091513	0.41676	0.00021498	515.8248016956161	118.52	1.4842	118.37	118.04	119.52	-0.14755					72	29	3	0	0	0	0.11171	2	11401	11389;11401		94.006	4.8312	1	172050			19101	3200	15592	15615	21164;21165	21165					0.11986916473574638
ILFNRVLGV	9	Unmodified	_ILFNRVLGV_					0	0	0		ENSG00000116711|ENST00000367466|PLA2G4A	ENSG00000116711|ENST00000367466|PLA2G4A	ENSG00000116711|ENST00000367466|PLA2G4A	MULTI-MSMS	OvCa9_classI_Rep3	3	515.8233032226562	2	515.824027	1029.6335	1.3839	0.00071384	-1.2068	-0.0006225	0.17707	9.1339E-05	515.8233107191149	119.78	1.9983	118.75	118.33	120.33	-1.0271					81	39	4	0	0	0	0.14739	6	9094	9090;9094;9100;9114;9121;9128		85.359	22.053	1	287890			19102	3200	15592	15615	21166;21167;21168;21169;21170;21171	21167					0.11986916473574638
ILFNRVLGV	9	Unmodified	_ILFNRVLGV_					0	0	0		ENSG00000116711|ENST00000367466|PLA2G4A	ENSG00000116711|ENST00000367466|PLA2G4A	ENSG00000116711|ENST00000367466|PLA2G4A	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.8225708007812	2	515.824027	1029.6335	-1.3788	-0.00071121	1.5759	0.0008129	0.19713	0.00010169	515.824706371997	120.06	1.8141	118.71	118.35	120.16	-1.3444					67	34	3	0	0	0	0.11171	6	11276	11267;11276;11288;11300;11314;11328		94.006	22.639	1	248980			19103	3200	15592	15615	21172;21173;21174;21175;21176;21177	21173					0.11986916473574638
ILFPLRFTL	9	Unmodified	_ILFPLRFTL_					0	0	0		ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	MULTI-MSMS	OvCa99_classI_Rep5	1	560.3490600585938	2	560.349877	1118.6852	1.3317	0.00074622	0.71453	0.00040039	2.0462	0.0011466	560.3501225650789	152.46	0.43324	152.46	152.21	152.64	0					25	11	3	0	0	0	0.40667	2	17852	17852;17870		51.335	1.8939	1	107660			19104	2173	15593	15616	21178;21179	21178					0.13060660167457172
ILFPMMSLI	9	Unmodified	_ILFPMMSLI_					0	0	0			REV__SPAG16|p.P488Sfs*57|1|0.03|ENSG00000144451|chr2:214014010-214014011|-/CAGTGAAGAACATGAAGTGCATAAAGGAA|frameshift_variant	REV__SPAG16|p.P488Sfs*57|1|0.03|ENSG00000144451|chr2:214014010-214014011|-/CAGTGAAGAACATGAAGTGCATAAAGGAA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	532.7985229492188	2	532.797774	1063.581	1.1695	0.00062309	-1.9251	-0.0010257	-0.75565	-0.00040261	532.7965885921914	150.22	1.6615	150.22	149.89	151.55	0					86	32	4	0	0	0	0.42057	1	17617	17617		50.025	0.81375	1	1399900	+		19105	29446	15594	15617	21180	21180					0.051748740240782354
ILFSCLRKRTL	11	Unmodified	_ILFSCLRKRTL_					0	0	0			REV__ENSG00000118600|ENST00000261234|RXYLT1	REV__ENSG00000118600|ENST00000261234|RXYLT1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.59918212890625	3	450.607713	1348.80131	0.70355	0.00031703	1.5548	0.00070058	2.2583	0.0010176	450.60824095143397	75.899	0.1459	72.96	72.839	72.985	-2.9389					4	2	2	0	0	0	0.025568	1	5990	5990		33.039	5.3955	1	4277.5	+		19106	18408	15595	15618	21181	21181					0.14086235675858916
ILFSTLAACFV	11	Unmodified	_ILFSTLAACFV_					0	0	0		ENSG00000080854|ENST00000533871|IGSF9B;nc|ENSG00000080854|Q9UPX0|IGSF9B;IGSF9B|p.L1050Afs*16|1|0.11|ENSG00000080854|chr11:133920577-133920578|-/C|frameshift_variant	ENSG00000080854|ENST00000533871|IGSF9B	ENSG00000080854|ENST00000533871|IGSF9B	MULTI-MSMS	OvCa9_classI_Rep2	2	592.8242797851562	2	592.822835	1183.63112	-0.62327	-0.00036949	3.1473	0.0018658	2.524	0.0014963	592.8246839253696	95.32	2.6195	94.292	93.923	96.542	-1.0281					186	52	8	0	0	0	0.68684	1	8635	8635		34.173	5.023	1	2906500			19107	1646	15596	15619	21182	21182					0.04664699953582385
ILFTAGYLSLF	11	Unmodified	_ILFTAGYLSLF_					0	0	0		ENSG00000180432|ENST00000316161|CYP8B1	ENSG00000180432|ENST00000316161|CYP8B1	ENSG00000180432|ENST00000316161|CYP8B1	MSMS	OvCa9_classI_Rep4_	4	415.5592956542969	3	415.56903	1243.68526	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.333	1	18.994	18.494	19.494	-1.3386								0	0	0	0.19474	1	38	38		24.232	2.4514	1				19108	7872	15597	15620	21183	21183					0.07316615376794289
ILFWALAIV	9	Unmodified	_ILFWALAIV_					0	0	0			REV__tr|A0A553SNT2|A0A553SNT2_NIACIHelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_25130PE=4SV=1	REV__tr|A0A553SNT2|A0A553SNT2_NIACIHelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_25130PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.3048706054688	2	523.325871	1044.63719	-1.9616	-0.0010266	-1.7467	-0.0009141	-3.7083	-0.0019407	523.324636171648	119.2	0.77467	117.86	117.58	118.35	-1.3444					18	14	2	0	0	0	0.027462	1	11218	11218		14.664	0	1	36876	+		19109	30448	15598	15621	21184	21184					0.11665586247386273
ILFYGCIVF	9	Unmodified	_ILFYGCIVF_					0	0	0		L1PA6_dup2267|chr6:2299837-2303022:+|1.5111882528479883|0.3006554191737456|2.33|429.0|168|3|anti-sense;L1PA6_dup2643|chr6:152083798-152084434:+|1.1736350357798646|0.19822291764206|2.57|420.0|33|2|anti-sense;L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|184|1|anti-sense;L1PA5_dup4809|chr6:151863684-151865093:+|1.0617149984704268|0.1855937726213876|2.52|421.0|47|1|anti-sense;chr2:182748376-182751658|104|12.19|0.28|5.42|+|2|TE_info:L1PA3,L1PA3_dup1364,L1,LINE,donor,-,182745742,182748376|None,DNAJC10|4	L1PA6_dup2267|chr6:2299837-2303022:+|1.5111882528479883|0.3006554191737456|2.33|429.0|168|3|anti-sense	L1PA6_dup2267|chr6:2299837-2303022:+|1.5111882528479883|0.3006554191737456|2.33|429.0|168|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.2700805664062	2	537.788264	1073.56198	-0.93564	-0.00050317	1.3226	0.00071129	0.38698	0.00020812	537.7887969451535	74.873	0.38635	71.642	71.434	71.82	-3.2308					13	7	2	0	0	0	0.027462	1	5877	5877		49.211	0	1	32565			19110	435	15599	15622	21185	21185					0.028136607246779022
ILGAVSPVF	9	Unmodified	_ILGAVSPVF_					0	0	0			REV__tr|A0A553SKH2|A0A553SKH2_NIACItRNAthreonylcarbamoyladenosinedehydrataseOS=NialliacirculansOX=1397GN=CEQ21_18600PE=4SV=1	REV__tr|A0A553SKH2|A0A553SKH2_NIACItRNAthreonylcarbamoyladenosinedehydrataseOS=NialliacirculansOX=1397GN=CEQ21_18600PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	451.7709045410156	2	451.770929	901.527304	0.53905	0.00024353	-0.5267	-0.00023795	0.012348	5.5786E-06	451.77058250866264	109.33	1.4061	107.6	107.33	108.73	-1.7256					71	26	4	0	0	0	0.39645	1	10055	10055		52.299	4.3836	1	496170	+		19111	30125	15600	15623	21186	21186					0.07260160908242597
ILGCVVEPPR	10	Unmodified	_ILGCVVEPPR_					0	0	0		nc|ENSG00000144857|Q9BWV1|BOC;ENSG00000144857|ENST00000682979|BOC;ENST00000471963.6_1_3:112968649-112990141:+|nuORF	nc|ENSG00000144857|Q9BWV1|BOC	nc|ENSG00000144857|Q9BWV1|BOC	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.8018188476562	2	541.804977	1081.5954	-0.69087	-0.00037432	4.1226	0.0022336	3.4317	0.0018593	541.8071971583336	37.691	0.55377	37.691	37.298	37.851	0					19	11	2	0	0	0	0.027021	1	2100	2100		29.15	4.9468	1	123890			19112	5189	15601	15624	21187	21187					0.05786662496598183
ILGGHGAVS	9	Unmodified	_ILGGHGAVS_					0	0	0			REV__MCOLN1|p.V258_L259insAGHGG|1|0.16|ENSG00000090674|chr19:7527956-7527957|-/GGCTGGGCACGGTGG|inframe_insertion	REV__MCOLN1|p.V258_L259insAGHGG|1|0.16|ENSG00000090674|chr19:7527956-7527957|-/GGCTGGGCACGGTGG|inframe_insertion	MULTI-MSMS	OvCa99_classI_Rep5	1	405.7304992675781	2	405.727052	809.439552	2.8803	0.0011686	4.3665	0.0017716	7.2468	0.0029402	405.7288569808727	101.24	1.3532	101.24	100.94	102.29	0					66	31	4	0	0	0	0.42057	1	11275	11275		50.025	2.1089	1	2330200	+		19113	28646	15602	15625	21188	21188					0.02720960037470377
ILGGPVISL	9	Unmodified	_ILGGPVISL_					0	0	0		nc|ENSG00000149571|Q8IZU9-2|KIRREL3;ENSG00000149571|ENST00000525144|KIRREL3	nc|ENSG00000149571|Q8IZU9-2|KIRREL3	nc|ENSG00000149571|Q8IZU9-2|KIRREL3	MULTI-MSMS	OvCa9_classI_Rep4_	4	434.7809753417969	2	434.778754	867.542954	0.59338	0.00025799	2.5222	0.0010966	3.1156	0.0013546	434.77972788818795	57.249	1.9714	53.904	53.425	55.397	-3.3449					103	38	4	0	0	0	0.53957	1	3784	3784		38.806	5.2906	1	352580			19114	5473	15603	15626	21189	21189					0.10388447425293634
ILGGSLSIII	10	Unmodified	_ILGGSLSIII_					0	0	0		tr|A0A7D6ZJJ7|A0A7D6ZJJ7_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11300PE=3SV=1	tr|A0A7D6ZJJ7|A0A7D6ZJJ7_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11300PE=3SV=1	tr|A0A7D6ZJJ7|A0A7D6ZJJ7_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11300PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	493.3191833496094	2	493.318243	984.621933	1.2328	0.00060816	-1.4512	-0.00071588	-0.21836	-0.00010772	493.3174202897749	124.35	2.0803	123.31	122.97	125.05	-1.0377					98	39	4	0	0	0	0.33316	1	9636	9636		76.847	2.8719	1	770890			19115	35644	15604	15627	21190	21190					0.12900674659567812
ILGGSLSIII	10	Unmodified	_ILGGSLSIII_					0	0	0		tr|A0A7D6ZJJ7|A0A7D6ZJJ7_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11300PE=3SV=1	tr|A0A7D6ZJJ7|A0A7D6ZJJ7_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11300PE=3SV=1	tr|A0A7D6ZJJ7|A0A7D6ZJJ7_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11300PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.3175964355469	2	493.318243	984.621933	-1.0868	-0.00053615	1.0496	0.00051777	-0.037261	-1.8381E-05	493.3186384956746	124.71	1.8285	123.31	123.02	124.85	-1.3908					99	35	4	0	0	0	0.41846	1	11822	11822		65.803	2.4969	1	724180			19116	35644	15604	15627	21191	21191					0.12900674659567812
ILGHGEIDV	9	Unmodified	_ILGHGEIDV_					0	0	0			REV__tr|A0A553SS03|A0A553SS03_NIACIMMPLfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_02030PE=4SV=1	REV__tr|A0A553SS03|A0A553SS03_NIACIMMPLfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_02030PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	476.2276306152344	2	476.758549	951.502546	2.0289	0.00096728	-0.16284	-7.7637E-05	1.866	0.00088964	476.75841484937024	110.38	0.67818	110.38	109.9	110.58	0					25	14	2	0	0	0	0.027456	1	12481	12481		38.806	9.6566	1	226510	+		19117	30785	15605	15628	21192	21192					0.0248548103485291
ILGKAGVKCV	10	Unmodified	_ILGKAGVKCV_					0	0	0			REV__tr|A0A7D6VYN9|A0A7D6VYN9_9CLOTV-typeATPsynthasealphachainOS=ClostridiumintestinaleOX=36845GN=atpAPE=3SV=1	REV__tr|A0A7D6VYN9|A0A7D6VYN9_9CLOTV-typeATPsynthasealphachainOS=ClostridiumintestinaleOX=36845GN=atpAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	494.3005065917969	2	494.304613	986.594672	-3.5513	-0.0017554	-3.9707	-0.0019627	-7.522	-0.0037182	494.3024982316327	153.87	1.3713	153.64	153.28	154.65	-0.22696					70	29	4	0	0	0	0.71192	1	15683	15683		29.15	1.2673	1	375650	+		19118	31824	15606	15629	21193	21193					0.10083867847538386
ILGLPKYTF	9	Unmodified	_ILGLPKYTF_					0	0	0		tr|A0A7D6VZ24|A0A7D6VZ24_9CLOTNADPH-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18035PE=3SV=1	tr|A0A7D6VZ24|A0A7D6VZ24_9CLOTNADPH-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18035PE=3SV=1	tr|A0A7D6VZ24|A0A7D6VZ24_9CLOTNADPH-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18035PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.2676391601562	2	526.312961	1050.61137	-0.72628	-0.00038225	-3.8262	-0.0020138	-4.5524	-0.002396	526.3107505240041	90.722	1.4277	88.147	87.853	89.28	-2.575					51	27	3	0	0	0	0.027462	1	7880	7880		38.806	0	1	139020			19119	35347	15607	15630	21194	21194					0.08808692005118246
ILGLSPVLA	9	Unmodified	_ILGLSPVLA_					0	0	0			REV__ENST00000393931.7_1_17:39911314-39911869:-|nuORF	REV__ENST00000393931.7_1_17:39911314-39911869:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	441.78875732421875	2	441.786579	881.558604	-1.0261	-0.0004533	3.9619	0.0017503	2.9359	0.001297	441.78822257367193	65.749	1.6562	62.264	61.84	63.496	-3.4854					83	33	3	0	0	0	0.57242	1	4774	4774		35.201	9.7505	1	467330	+		19120	25289	15608	15631	21195	21195					0.11308733942314575
ILGLVRHGL	9	Unmodified	_ILGLVRHGL_					0	0	0			REV__nc|ENSG00000168404|Q8NB16-2|MLKL	REV__nc|ENSG00000168404|Q8NB16-2|MLKL	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.31280517578125	2	489.316369	976.618185	-3.028	-0.0014817	-1.2985	-0.00063537	-4.3265	-0.002117	489.31563425823117	151.49	1.5662	150.06	149.67	151.24	-1.4344					103	34	4	0	0	0	0.58665	2	14987	14987;14999		33.516	5.2613	1	763840	+		19121	21372	15609	15632	21196;21197	21196					0.12894049676367558
ILGMIVAILT	10	Unmodified	_ILGMIVAILT_					0	0	0			REV__nc|ENSG845|O71037|ERVK-19_env;REV__nc|ENSG849|O42043|ERVK-18_env;REV__nc|ENSG821|P63135|ERVK-7_pol	REV__nc|ENSG845|O71037|ERVK-19_env	MULTI-SECPEP	OvCa9_classI_Rep3	3	522.3389892578125	2	522.330296	1042.64604	0.37336	0.00019501	-0.45852	-0.0002395	-0.085169	-4.4486E-05	522.3299930964271	106.35	0.72684	105.09	104.8	105.53	-1.267					32	13	3	0	0	0	0.026939	1	7542	7542		24.203	6.8378	1	246840	+		19122	29233;29230;29234	15610	15633	21198	21198					0.12642191821601045
ILGPMEPLL	9	Unmodified	_ILGPMEPLL_					0	0	0			REV__ENST00000455397.5_1_1:151337021-151341586:-|nuORF	REV__ENST00000455397.5_1_1:151337021-151341586:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	491.8002014160156	2	491.785721	981.55689	0.42531	0.00020916	0.43006	0.0002115	0.85537	0.00042066	491.7859933689381	106.29	0.24921	105.85	105.7	105.95	-0.43642					7	4	2	0	0	0	0.027425	1	9897	9897		60.294	19.721	1	9394.7	+		19123	19840	15611	15634	21199	21199					0.06537356862065735
ILGRGQVILE	10	Unmodified	_ILGRGQVILE_					0	0	0			REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	549.3385620117188	2	549.337498	1096.66044	1.9547	0.0010738	-0.052567	-2.8877E-05	1.9022	0.0010449	549.3373313202926	112.95	0.63541	112.95	112.7	113.33	0					38	13	4	0	0	0	0.13504	1	12858	12858		104.75	1.9732	1	1761200	+		19124	17513	15612	15635	21200	21200					0.11597980294095578
ILGRKTRHDV	10	Unmodified	_ILGRKTRHDV_					0	0	0		nc|ENSG00000087269|P78316-2|NOP14;ENSG00000087269|ENST00000416614|NOP14	nc|ENSG00000087269|P78316-2|NOP14	nc|ENSG00000087269|P78316-2|NOP14	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8568725585938	2	597.856921	1193.69929	-1.9041	-0.0011384	0.86104	0.00051478	-1.0431	-0.00062361	597.8573316932594	144.83	3.9651	143.86	141.71	145.68	-0.97301					192	79	4	0	0	0	0.71192	1	12141	12141		29.15	4.6304	1	187110			19125	1770	15613	15636	21201	21201					0.11018705648461946
ILGSKISSV	9	Unmodified	_ILGSKISSV_					0	0	0		ENST00000513750.5_1_11:67066841-67067513:+|nuORF;ENST00000508417.5_1_11:67066841-67069800:+|nuORF;ENST00000512231.5_1_11:67066841-67069800:+|nuORF	ENST00000513750.5_1_11:67066841-67067513:+|nuORF	ENST00000513750.5_1_11:67066841-67067513:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	452.2782897949219	2	452.279118	902.543683	-0.83296	-0.00037673	-2.0392	-0.00092228	-2.8722	-0.001299	452.2780868849216	125.92	4.6201	124.51	123.31	127.93	-1.4143					122	91	2	0	0	0	0.5811	1	11955	11955		34.173	2.6427	1	24523			19126	12944	15614	15637	21202	21202					0.08851242074342736
ILGSKISSV	9	Unmodified	_ILGSKISSV_					0	0	0		ENST00000513750.5_1_11:67066841-67067513:+|nuORF;ENST00000508417.5_1_11:67066841-67069800:+|nuORF;ENST00000512231.5_1_11:67066841-67069800:+|nuORF	ENST00000513750.5_1_11:67066841-67067513:+|nuORF	ENST00000513750.5_1_11:67066841-67067513:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	452.279118	902.543683	2.4717	0.0011179	-5.4878	-0.002482	-3.0161	-0.0013641	452.2764145406673	124.8	0.493	124.56	124.32	124.81	-0.2359	-0.0011632	-0.0019494	NaN	34.173	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13267			19127	12944	15614	15637							0.08851242074342736
ILGSKISSV	9	Unmodified	_ILGSKISSV_					0	0	0		ENST00000513750.5_1_11:67066841-67067513:+|nuORF;ENST00000508417.5_1_11:67066841-67069800:+|nuORF;ENST00000512231.5_1_11:67066841-67069800:+|nuORF	ENST00000513750.5_1_11:67066841-67067513:+|nuORF	ENST00000513750.5_1_11:67066841-67067513:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	452.279118	902.543683	1.5424	0.00069759	-4.4278	-0.0020026	-2.8854	-0.001305	452.27705897839155	125.67	2.8162	124.62	123.43	126.24	-1.0519	0.05713	-0.00099064	NaN	34.173	74	53	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21953			19128	12944	15614	15637							0.08851242074342736
ILGSKLDHKL	10	Unmodified	_ILGSKLDHKL_					0	0	0			REV__ENSG00000196455|ENST00000356763|PIK3R4	REV__ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	OvCa9_classI_Rep2	2	562.3436889648438	2	562.345323	1122.67609	-1.142	-0.00064221	-2.621	-0.0014739	-3.7631	-0.0021161	562.3438081477608	141.84	4.7959	141.62	140.24	145.03	-0.22697					133	96	2	0	0	0	0.75313	1	14386	14386		24.519	3.5723	1	113870	+		19129	22828	15615	15638	21203	21203					0.11966266811123205
ILGSQFVKKMA	11	Unmodified	_ILGSQFVKKMA_					0	0	0		tr|A0A553STV8|A0A553STV8_NIACIBcr/CflAfamilyeffluxtransporterOS=NialliacirculansOX=1397GN=CEQ21_05870PE=3SV=1	tr|A0A553STV8|A0A553STV8_NIACIBcr/CflAfamilyeffluxtransporterOS=NialliacirculansOX=1397GN=CEQ21_05870PE=3SV=1	tr|A0A553STV8|A0A553STV8_NIACIBcr/CflAfamilyeffluxtransporterOS=NialliacirculansOX=1397GN=CEQ21_05870PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3552856445312	2	611.354834	1220.69511	-2.3862	-0.0014588	4.2549	0.0026013	1.8688	0.0011425	611.3572929291362	147.43	3.7918	146.48	144.56	148.35	-0.9512					254	75	5	0	0	0	0.70865	1	12333	12333		26.693	1.1189	1	250910			19130	34541	15616	15639	21204	21204					0.0935948011056098
ILGSVLIGHAI	11	Unmodified	_ILGSVLIGHAI_					0	0	0			REV__tr|A0A7D6ZGJ3|A0A7D6ZGJ3_9CLOTMaoCfamilydehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_22530PE=4SV=1	REV__tr|A0A7D6ZGJ3|A0A7D6ZGJ3_9CLOTMaoCfamilydehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_22530PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	546.8403930664062	2	546.842416	1091.67028	-7.0439	-0.0038519	3.2968	0.0018028	-3.7471	-0.0020491	546.8440760274939	158.88	1.6198	157.61	157.26	158.88	-1.267					96	31	5	0	0	0	0.50472	2	13743	13743;13749		53.351	9.2347	1	890150	+		19131	32002	15617	15640	21205;21206	21205					0.12811168299481324
ILGTGMGIAW	10	Unmodified	_ILGTGMGIAW_					0	0	0			REV__ENSG00000198678|ENST00000328207|OR5BS1P	REV__ENSG00000198678|ENST00000328207|OR5BS1P	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.8049621582031	2	509.773145	1017.53174	-0.0067919	-3.4623E-06	2.7576	0.0014058	2.7508	0.0014023	509.77458490160467	112.51	0.70763	111	110.69	111.39	-1.5111					21	13	2	0	0	0	0.026639	1	10398	10398		53.351	27.901	1	33184	+		19132	23042	15618	15641	21207	21207					0.023673020594969785
ILGTHTKVMN	10	Unmodified	_ILGTHTKVMN_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.3116455078125	2	557.307884	1112.60121	1.2338	0.00068758	2.8133	0.0015679	4.047	0.0022554	557.3092024048326	113.86	1.9693	112.41	112.1	114.07	-1.4461					97	38	4	0	0	0	0.5675	1	10602	10602		45.972	0	1	517780			19133	3094	15619	15642	21208	21208					0.049417610082628016
ILGTLHIII	9	Unmodified	_ILGTLHIII_					0	0	0			REV__tr|A0A7D7A3Z5|A0A7D7A3Z5_9CLOTDMTfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23485PE=4SV=1	REV__tr|A0A7D7A3Z5|A0A7D7A3Z5_9CLOTDMTfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23485PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	496.829833984375	2	496.828778	991.643003	1.4547	0.00072276	-0.073364	-3.6449E-05	1.3814	0.00068631	496.82868474743657	148.53	2.5161	148.53	148.18	150.69	0					110	50	4	0	0	0	0.17908	1	17382	17382		79.939	0	1	2754700	+		19134	32598	15620	15643	21209	21209					0.14684684759083666
ILGTVKPN	8	Unmodified	_ILGTVKPN_					0	0	0		ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF;ENST00000556263.1_1_14:55605083-55607082:+|nuORF	ENSG00000131981|ENST00000254301|LGALS3	ENSG00000131981|ENST00000254301|LGALS3	MULTI-MSMS	OvCa9_classI_Rep2	2	421.2590026855469	2	421.260728	840.506903	0.1688	7.111E-05	-3.1201	-0.0013144	-2.9513	-0.0012433	421.2592965587955	134.89	1.4682	134.66	133.66	135.13	-0.22696					55	29	3	0	0	0	0.74971	1	13350	13350		26.796	0	1	378840			19135	4103	15621	15644	21210	21210					0.08026990248424681
ILGVGKGDEV	10	Unmodified	_ILGVGKGDEV_					0	0	0		tr|A0A7D6VZ59|A0A7D6VZ59_9CLOTDegT/DnrJ/EryC1/StrSaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18795PE=3SV=1	tr|A0A7D6VZ59|A0A7D6VZ59_9CLOTDegT/DnrJ/EryC1/StrSaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18795PE=3SV=1	tr|A0A7D6VZ59|A0A7D6VZ59_9CLOTDegT/DnrJ/EryC1/StrSaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18795PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.3016052246094	2	493.779482	985.544411	-0.23865	-0.00011784	0.47168	0.00023291	0.23303	0.00011507	493.77964364731525	94.757	0.85063	92.289	91.86	92.711	-2.4685					38	16	3	0	0	0	0.026734	1	8331	8331		47.657	35.451	1	180060			19136	35350	15622	15645	21211	21211					0.05106036723384477
ILGVGTSLFL	10	Unmodified	_ILGVGTSLFL_					0	0	0		tr|A0A7D6VQM6|A0A7D6VQM6_9CLOTPolysaccharidebiosynthesisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21740PE=4SV=1	tr|A0A7D6VQM6|A0A7D6VQM6_9CLOTPolysaccharidebiosynthesisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21740PE=4SV=1	tr|A0A7D6VQM6|A0A7D6VQM6_9CLOTPolysaccharidebiosynthesisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21740PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	510.3138732910156	2	510.310418	1018.60628	1.0237	0.00052238	-0.91866	-0.0004688	0.10499	5.358E-05	510.3096534321196	124.36	0.78475	124.36	124.1	124.89	0					26	16	3	0	0	0	0.52321	1	14338	14338		51.335	8.9393	1	125210			19137	34859	15623	15646	21212	21212					0.09772388142516775
ILGVLFGKVF	10	Unmodified	_ILGVLFGKVF_					0	0	0		ENSG00000212993|ENST00000696633|POU5F1B	ENSG00000212993|ENST00000696633|POU5F1B	ENSG00000212993|ENST00000696633|POU5F1B	MULTI-MSMS	OvCa9_classI_Rep2	2	546.8401489257812	2	546.844428	1091.6743	-4.8246	-0.0026383	-2.6452	-0.0014465	-7.4698	-0.0040848	546.8429110027589	158.57	1.287	158.34	158.06	159.35	-0.22697					77	26	5	0	0	0	0.80532	1	16130	16130		18.324	2.6826	1	487190			19138	9110	15624	15647	21213	21213					0.13213257793177036
ILGWIPEGK	9	Unmodified	_ILGWIPEGK_					0	0	0		ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.3133850097656	2	506.794935	1011.57532	0.56206	0.00028485	-1.9657	-0.0009962	-1.4036	-0.00071135	506.7937361075896	110.2	0.36816	108.6	108.28	108.65	-1.6011					12	6	2	0	0	0	0.027432	1	10110	10110		35.201	3.2459	1	35311			19139	4453	15625	15648	21214	21214					0.06999234828276713
ILGWIPEGK	9	Unmodified	_ILGWIPEGK_					0	0	0		ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	506.794935	1011.57532	-0.19767	-0.00010018	-1.7952	-0.00090982	-1.9929	-0.00101	506.79382623076305	108.56	0.24729	108.34	108.12	108.37	-0.22498	-0.12973	0.00020635	NaN	35.201	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49563			19140	4453	15625	15648							0.06999234828276713
ILGWIPEGK	9	Unmodified	_ILGWIPEGK_					0	0	0		ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	ENSG00000136052|ENST00000258538|SLC41A2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	506.794935	1011.57532	-0.72362	-0.00036673	-2.1623	-0.0010958	-2.8859	-0.0014626	506.79434400544596	109.62	0.31509	108.47	108.19	108.51	-1.1444	0.0030737	-0.0001657	NaN	35.201	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48795			19141	4453	15625	15648							0.06999234828276713
ILGWSVPDSLV	11	Unmodified	_ILGWSVPDSLV_					0	0	0			REV__tr|A0A553SMN5|A0A553SMN5_NIACIDUF475domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22865PE=3SV=1	REV__tr|A0A553SMN5|A0A553SMN5_NIACIDUF475domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22865PE=3SV=1	MSMS	OvCa99_classI_Rep5	1	593.332275390625	2	593.329339	1184.64412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.86	1	108.86	108.36	109.36	0								0	0	0	0.19422	1	12320	12320		32.812	3.6424	1		+		19142	30353	15626	15649	21215	21215					0.059188543373238645
ILGYILPYQWR	11	Unmodified	_ILGYILPYQWR_					0	0	0			REV__ENSG00000126821|ENST00000247225|SGPP1	REV__ENSG00000126821|ENST00000247225|SGPP1	MULTI-MSMS	OvCa99_classI_Rep5	1	474.6027526855469	3	474.602845	1420.78671	-0.23047	-0.00010938	-0.57273	-0.00027182	-0.8032	-0.0003812	474.60250713528535	48.772	0.62018	48.772	48.544	49.164	0					47	13	5	0	0	0	0.69424	1	3607	3607		31.634	9.0727	1	1092100	+		19143	18798	15627	15650	21216	21216					0.09314486799348742
ILHDDEVTV	9	Unmodified	_ILHDDEVTV_					0	0	0		ENST00000487304.6_1_15:69745218-69746066:+|nuORF;nc|ENSG00000137818|P05386-2|RPLP1;ENSG00000137818|ENST00000260379|RPLP1	ENST00000487304.6_1_15:69745218-69746066:+|nuORF	ENST00000487304.6_1_15:69745218-69746066:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	520.76806640625	2	520.766571	1039.51859	0.016547	8.6173E-06	0.028182	1.4676E-05	0.044729	2.3293E-05	520.7665795556696	73.986	3.2446	73.986	73.678	76.922	0					206	81	5	0	0	0	0.064607	1	7294	7294		110.34	22.641	1	128020000			19144	4623	15628	15651	21217	21217					0.00041142481086353655
ILHDDEVTV	9	Unmodified	_ILHDDEVTV_					0	0	0		ENST00000487304.6_1_15:69745218-69746066:+|nuORF;nc|ENSG00000137818|P05386-2|RPLP1;ENSG00000137818|ENST00000260379|RPLP1	ENST00000487304.6_1_15:69745218-69746066:+|nuORF	ENST00000487304.6_1_15:69745218-69746066:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	520.7677612304688	2	520.766571	1039.51859	-0.63486	-0.00033061	0.077139	4.0171E-05	-0.55772	-0.00029044	520.766555060983	76.275	3.5537	73.903	73.518	77.072	-2.3715					215	69	5	0	0	0	0.098892	5	3911	3911;3929;3941;3954;3960		97.473	26.177	1	4347000			19145	4623	15628	15651	21218;21219;21220;21221;21222	21218					0.00041142481086353655
ILHDDEVTV	9	Unmodified	_ILHDDEVTV_					0	0	0		ENST00000487304.6_1_15:69745218-69746066:+|nuORF;nc|ENSG00000137818|P05386-2|RPLP1;ENSG00000137818|ENST00000260379|RPLP1	ENST00000487304.6_1_15:69745218-69746066:+|nuORF	ENST00000487304.6_1_15:69745218-69746066:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.7675170898438	2	520.766571	1039.51859	-0.65675	-0.00034201	0.056265	2.9301E-05	-0.60049	-0.00031271	520.7665431506473	77.263	2.5418	74.447	74.096	76.638	-2.8165					142	52	5	0	0	0	0.057208	3	6163	6163;6175;6187		114.59	24.216	1	4845700			19146	4623	15628	15651	21223;21224;21225	21223					0.00041142481086353655
ILHDHLQLE	9	Unmodified	_ILHDHLQLE_					0	0	0			REV__tr|A0A553SFJ7|A0A553SFJ7_NIACISodium:protonantiporterOS=NialliacirculansOX=1397GN=CEQ21_08965PE=4SV=1	REV__tr|A0A553SFJ7|A0A553SFJ7_NIACISodium:protonantiporterOS=NialliacirculansOX=1397GN=CEQ21_08965PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	558.3328857421875	2	559.303655	1116.59276	0.86476	0.00048366	3.1982	0.0017888	4.063	0.0022724	559.3068432955992	90.776	0.40968	88.201	88.007	88.417	-2.575					12	7	3	0	0	0	0.027462	1	7828	7828		23.042	4.7804	1	9743.7	+		19147	29585	15629	15652	21226	21226					0.03912530363299993
ILHEKFIN	8	Unmodified	_ILHEKFIN_					0	0	0		nc|ENSG00000179299|Q8NE18-2|NSUN7;ENSG00000179299|ENST00000381782|NSUN7	nc|ENSG00000179299|Q8NE18-2|NSUN7	nc|ENSG00000179299|Q8NE18-2|NSUN7	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.8124084472656	2	507.292559	1012.57057	-1.2764	-0.0006475	0.80277	0.00040724	-0.47361	-0.00024026	507.7944429799698	103.68	0.2123	103.68	103.6	103.81	0					6	4	2	0	0	0	0.028476	1	11592	11592		63.306	15.391	1	66313			19148	7814	15630	15653	21227	21227					0.06478350685506484
ILHEKIIDL	9	Unmodified	_ILHEKIIDL_					0	0	0		MAGEA11|p.D224E|1|0.08|ENSG00000185247|chrX:149716158-149716158|C/A|missense_variant	MAGEA11|p.D224E|1|0.08|ENSG00000185247|chrX:149716158-149716158|C/A|missense_variant	MAGEA11|p.D224E|1|0.08|ENSG00000185247|chrX:149716158-149716158|C/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.7699584960938	2	547.334424	1092.6543	-0.7534	-0.00041236	-2.0393	-0.0011162	-2.7927	-0.0015285	547.3332584463915	39.588	0.72822	39.588	39.332	40.06	0					29	16	3	0	0	0	0.027353	1	2329	2329		62.107	5.3864	1	465760			19149	14814	15631	15654	21228	21228					0.11167462062576305
ILHELISEL	9	Unmodified	_ILHELISEL_					0	0	0			REV__ENST00000537553.5_1_12:30863433-30867904:-|nuORF	REV__ENST00000537553.5_1_12:30863433-30867904:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.8101806640625	2	533.810782	1065.60701	-0.37036	-0.0001977	0.090578	4.8352E-05	-0.27978	-0.00014935	533.8107068230561	114.36	1.887	112.96	112.63	114.51	-1.3977					88	36	3	0	0	0	0.34496	1	10661	10661		57.811	2.3071	1	280680	+		19150	27309	15632	15655	21229	21229					0.07683182791561194
ILHFYEKFWWW	11	Unmodified	_ILHFYEKFWWW_					0	0	0		tr|A0A7D7A128|A0A7D7A128_9CLOTDUF2238domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13675PE=4SV=1	tr|A0A7D7A128|A0A7D7A128_9CLOTDUF2238domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13675PE=4SV=1	tr|A0A7D7A128|A0A7D7A128_9CLOTDUF2238domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13675PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.8234252929688	3	552.278362	1653.81326	0.30245	0.00016703	-3.1903	-0.0017619	-2.8878	-0.0015949	552.2776711353769	64.57	0.87818	61.085	60.529	61.407	-3.4854					39	17	4	0	0	0	0.026549	1	4551	4551		3.6191	2.2003	1	95528			19151	36021	15633	15656	21230	21230					0.01250175690688593
ILHKFFLE	8	Unmodified	_ILHKFFLE_					0	0	0		ENSG00000166415|ENST00000360509|WDR72	ENSG00000166415|ENST00000360509|WDR72	ENSG00000166415|ENST00000360509|WDR72	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.8142700195312	2	523.805303	1045.59605	0.29988	0.00015708	-2.8903	-0.0015139	-2.5904	-0.0013569	523.8034375949859	109.64	0.8417	109.46	108.97	109.81	-0.17236					21	16	2	0	0	0	0.028476	1	10319	10319		26.796	2.5934	1	14356			19152	6677	15634	15657	21231	21231					0.07507825207926544
ILHKFFLE	8	Unmodified	_ILHKFFLE_					0	0	0		ENSG00000166415|ENST00000360509|WDR72	ENSG00000166415|ENST00000360509|WDR72	ENSG00000166415|ENST00000360509|WDR72	MULTI-MATCH	OvCa9_classI_Rep3	3		2	523.805303	1045.59605	0.10738	5.6245E-05	-1.2367	-0.00064778	-1.1293	-0.00059153	523.804166934988	110.43	0.83788	109.28	108.93	109.76	-1.1444	-0.089869	0.00066	NaN	26.796	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12185			19153	6677	15634	15657							0.07507825207926544
ILHLAFMISR	10	Unmodified	_ILHLAFMISR_					0	0	0		tr|A0A7D6ZQ70|A0A7D6ZQ70_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23185PE=4SV=1	tr|A0A7D6ZQ70|A0A7D6ZQ70_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23185PE=4SV=1	tr|A0A7D6ZQ70|A0A7D6ZQ70_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23185PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	601.3031005859375	2	600.849719	1199.68488	1.114	0.00066936	4.3739	0.0026281	5.488	0.0032974	600.8529331487222	151.12	1.0087	151.12	150.64	151.65	0					37	19	3	0	0	0	0.026871	1	17729	17729		37.159	15.199	1	89448			19154	35697	15635	15658	21232	21232					0.09302917175955372
ILHLLTPR	8	Unmodified	_ILHLLTPR_					0	0	0			REV__ENSG00000138823|ENST00000265517|MTTP	REV__ENSG00000138823|ENST00000265517|MTTP	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.27947998046875	2	481.810919	961.607286	0.47623	0.00022945	3.1317	0.0015089	3.6079	0.0017383	481.8129582859226	162.05	0.71036	162.05	161.77	162.48	0					21	13	2	0	0	0	0.028476	1	18982	18982		35.201	8.4046	1	32351	+		19155	19580	15636	15659	21233	21233					0.1249464730208274
ILHPDLTAL	9	Unmodified	_ILHPDLTAL_					0	0	0		tr|A0A553SKR3|A0A553SKR3_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_19165PE=4SV=1	tr|A0A553SKR3|A0A553SKR3_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_19165PE=4SV=1	tr|A0A553SKR3|A0A553SKR3_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_19165PE=4SV=1	MSMS	OvCa9_classI_Rep3	3	496.79205322265625	2	496.792392	991.570232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.88	1	117.85	117.35	118.35	-1.0271								0	0	0	0.17704	1	8990	8990		38.806	5.2906	1				19156	33644	15637	15660	21234	21234					0.07410930965647822
ILHPEVFF	8	Unmodified	_ILHPEVFF_					0	0	0			REV__ENSG00000007944|ENST00000356840|MYLIP	REV__ENSG00000007944|ENST00000356840|MYLIP	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.8008117675781	2	501.276378	1000.5382	0.14237	7.1369E-05	-2.9775	-0.0014925	-2.8351	-0.0014212	501.2746984865616	73.733	0.57889	73.733	73.597	74.176	0					26	14	3	0	0	0	0.028476	1	7232	7232		44.531	0	1	1572100	+		19157	16441	15638	15661	21235	21235					0.03795563282517378
ILHRIFTT	8	Unmodified	_ILHRIFTT_					0	0	0			REV__ENSG00000110047|ENST00000320631|EHD1	REV__ENSG00000110047|ENST00000320631|EHD1	MULTI-MSMS	OvCa9_classI_Rep2	2	500.7982482910156	2	500.800552	999.58655	-3.3891	-0.0016973	-0.88633	-0.00044387	-4.2754	-0.0021411	500.79997207948645	149.12	1.1552	148.89	148.52	149.67	-0.22696					61	22	4	0	0	0	0.74679	1	15082	15082		28.254	2.8041	1	177980	+		19158	17966	15639	15662	21236	21236					0.08674056922416185
ILHSFASLL	9	Unmodified	_ILHSFASLL_					0	0	0			REV__ENST00000416543.5_1_4:106629178-106629382:-|nuORF	REV__ENST00000416543.5_1_4:106629178-106629382:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	500.79412841796875	2	500.794935	999.575317	-0.44531	-0.00022301	-0.32042	-0.00016047	-0.76574	-0.00038348	500.79474539888093	109.47	3.7802	108.32	107.57	111.35	-1.1444					188	73	5	0	0	0	0.50066	1	7870	7870		42.474	1.6963	1	2461100	+		19159	25547	15640	15663	21237	21237					0.07551234828292763
ILHVQYVD	8	Unmodified	_ILHVQYVD_					0	0	0			REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|256|2|anti-sense	REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|256|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.3075866699219	2	493.768917	985.523281	2.16	0.0010666	0.11089	5.4755E-05	2.2709	0.0011213	493.76893009797595	95.013	0.46739	95.013	94.776	95.244	0					18	10	2	0	0	0	0.028476	1	10355	10355		35.201	0	1	465780	+		19160	28470	15641	15664	21238	21238					0.0299407141451411
ILHYLVDKD	9	Unmodified	_ILHYLVDKD_					0	0	0		ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.3159790039062	2	558.308406	1114.60226	1.683	0.00093961	-4.2155	-0.0023535	-2.5325	-0.0014139	558.3051926746357	111.67	0.58842	111.67	111.2	111.79	0					15	12	2	0	0	0	0.027462	1	12690	12690		15.642	0	1	143530			19161	5728	15642	15665	21239	21239					0.04954298648794975
ILIARLTPL	9	Unmodified	_ILIARLTPL_					0	0	0		tr|A0A7D6VYK3|A0A7D6VYK3_9CLOTAscorbate-specificPTSsystemEIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11250PE=3SV=1	tr|A0A7D6VYK3|A0A7D6VYK3_9CLOTAscorbate-specificPTSsystemEIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11250PE=3SV=1	tr|A0A7D6VYK3|A0A7D6VYK3_9CLOTAscorbate-specificPTSsystemEIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11250PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.3419189453125	2	505.342052	1008.66955	2.4457	0.0012359	-3.7738	-0.0019071	-1.3281	-0.00067113	505.33994217432223	135.22	1.8729	133.68	133.11	134.99	-1.5437					124	33	5	0	0	0	0.31747	1	13062	13062		60.972	5.4677	1	1621800			19162	35334	15643	15666	21240	21240					0.16556373650416845
ILIAYATVAII	11	Unmodified	_ILIAYATVAII_					0	0	0		tr|A0A7D6ZE88|A0A7D6ZE88_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_12700PE=4SV=1	tr|A0A7D6ZE88|A0A7D6ZE88_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_12700PE=4SV=1	tr|A0A7D6ZE88|A0A7D6ZE88_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_12700PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.2874145507812	2	580.8681	1159.72165	1.5665	0.00090992	-3.6746	-0.0021344	-2.1081	-0.0012245	580.8664485735455	133.8	0.42772	133.8	133.58	134.01	0					15	8	2	0	0	0	0.026099	1	15546	15546		19.997	9.1312	1	36890			19163	35477	15644	15667	21241	21241					0.14817492273527932
ILICMVILL	9	Unmodified	_ILICMVILL_					0	0	0		ENSG00000149596|ENST00000372980|JPH2	ENSG00000149596|ENST00000372980|JPH2	ENSG00000149596|ENST00000372980|JPH2	MULTI-MSMS	OvCa9_classI_Rep2	2	515.82275390625	2	515.823792	1029.63303	-1.3573	-0.00070015	2.2287	0.0011496	0.87138	0.00044948	515.8248016956161	118.52	1.4842	118.37	118.04	119.52	-0.14755					72	29	3	0	0	0	0.22187	1	11383	11383		72.62	1.3242	1	172050			19164	5479	15645	15668	21242	21242					0.1194003743785288
ILIFGVGSLL	10	Unmodified	_ILIFGVGSLL_					0	0	0		tr|A0A7D6ZUJ8|A0A7D6ZUJ8_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_00395PE=4SV=1	tr|A0A7D6ZUJ8|A0A7D6ZUJ8_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_00395PE=4SV=1	tr|A0A7D6ZUJ8|A0A7D6ZUJ8_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_00395PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.326416015625	2	516.328611	1030.64267	0.12412	6.4089E-05	-0.4323	-0.00022321	-0.30818	-0.00015912	516.3282703381798	111.83	1.4945	110.32	109.95	111.44	-1.5111					68	28	4	0	0	0	0.58282	1	10331	10331		44.117	8.4985	1	208720			19165	35775	15646	15669	21243	21243					0.12857265039247068
ILIFLSVVPLI	11	Unmodified	_ILIFLSVVPLI_					0	0	0		ENSG00000145740|ENST00000396591|SLC30A5;nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF	ENSG00000145740|ENST00000396591|SLC30A5	ENSG00000145740|ENST00000396591|SLC30A5	MULTI-MSMS	OvCa9_classI_Rep2	2	409.6078186035156	3	409.608937	1225.80498	0.6889	0.00028218	-3.0246	-0.0012389	-2.3357	-0.00095672	409.60766459120623	104.29	12.102	103.72	103.28	115.38	-0.57639					699	244	5	0	0	0	0.4646	4	9985	9628;9784;9858;9985		56.434	5.0953	1	1628000			19166	5242	15647	15670	21244;21245;21246;21247	21247					0.20111228721384578
ILIFVFGALI	10	Unmodified	_ILIFVFGALI_					0	0	0			REV__ENST00000254066.9_1_17:38512563-38513013:+|nuORF	REV__ENST00000254066.9_1_17:38512563-38513013:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.79345703125	2	553.354628	1104.6947	-0.3171	-0.00017547	-3.816	-0.0021116	-4.1331	-0.002287	553.3523530468067	66.414	1.3772	62.924	62.66	64.037	-3.4902					59	27	3	0	0	0	0.027007	1	4833	4833		26.796	0	1	135300	+		19167	23875	15648	15671	21248	21248					0.14654428452990942
ILIFVSSY	8	Unmodified	_ILIFVSSY_					0	0	0			REV__tr|A0A553SLQ7|A0A553SLQ7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_21100PE=4SV=1	REV__tr|A0A553SLQ7|A0A553SLQ7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_21100PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.7247314453125	2	471.270761	940.52697	1.6149	0.00076105	-3.0236	-0.001425	-1.4087	-0.0006639	471.26919224396704	112.11	0.23138	112.11	111.97	112.2	0					6	4	2	0	0	0	0.028476	1	12738	12738		54.765	0	1	23150	+		19168	30253	15649	15672	21249	21249					0.05432741188383261
ILIGGFISETL	11	Unmodified	_ILIGGFISETL_					0	0	0		ENSG00000124564|ENST00000397060|SLC17A3;nc|ENSG00000124564|O00476|SLC17A3	ENSG00000124564|ENST00000397060|SLC17A3	ENSG00000124564|ENST00000397060|SLC17A3	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.3029174804688	2	581.839539	1161.66453	2.1389	0.0012445	-0.060675	-3.5303E-05	2.0782	0.0012092	581.8391443860642	121.25	0.93024	121.25	120.97	121.9	0					63	20	4	0	0	0	0.025593	1	13945	13945		66.429	15.237	1	559550			19169	3658	15650	15673	21250	21250					0.09016024997163186
ILIGITEP	8	Unmodified	_ILIGITEP_					0	0	0		ENSG00000185133|ENST00000331075|INPP5J;ENST00000461241.1_1_22:31523357-31529733:+|nuORF;nc|ENSG00000185133|Q15735-3|INPP5J;nc|ENSG00000185133|Q15735-2|INPP5J	ENSG00000185133|ENST00000331075|INPP5J	ENSG00000185133|ENST00000331075|INPP5J	MULTI-MSMS	OvCa9_classI_Rep2	2	428.26116943359375	2	428.262936	854.51132	-2.1797	-0.00093349	-0.96416	-0.00041291	-3.1439	-0.0013464	428.2624599299376	144.02	1.6837	143.79	143.2	144.88	-0.22697					114	33	5	0	0	0	0.75724	1	14469	14469		23.037	0	1	330270			19170	8228	15651	15674	21251	21251					0.07824454671322201
ILIHLHRPKGT	11	Unmodified	_ILIHLHRPKGT_					0	0	0			REV__KIR2DL1|p.N240K|1|0.24|ENSG00000125498|chr19:54782926-54782926|C/A|missense_variant	REV__KIR2DL1|p.N240K|1|0.24|ENSG00000125498|chr19:54782926-54782926|C/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	642.8468627929688	2	642.898589	1283.78262	-0.85991	-0.00055284	-1.7592	-0.001131	-2.6192	-0.0016838	642.8983880360843	76.118	0.25472	73.747	73.518	73.773	-2.3715					7	4	2	0	0	0	0.025806	1	3877	3877		31.53	12.426	1	33559	+		19171	28339	15652	15675	21252	21252					0.15208442096309227
ILIHQLGTCP	10	Unmodified	_ILIHQLGTCP_					0	0	0			REV__ENST00000328965.8_2_11:120100260-120100626:+|nuORF	REV__ENST00000328965.8_2_11:120100260-120100626:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.2738647460938	2	547.804977	1093.5954	-1.3655	-0.00074805	4.1957	0.0022984	2.8301	0.0015503	547.807531081489	43.57	1.1819	40.562	39.906	41.088	-3.0074					33	22	2	0	0	0	0.026956	1	2073	2073		26.693	0	1	93410	+		19172	24517	15653	15676	21253	21253					0.052346624966048694
ILIHSINEF	9	Unmodified	_ILIHSINEF_					0	0	0		tr|A0A7D6VM19|A0A7D6VM19_9CLOTPLP-dependentaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12195PE=3SV=1	tr|A0A7D6VM19|A0A7D6VM19_9CLOTPLP-dependentaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12195PE=3SV=1	tr|A0A7D6VM19|A0A7D6VM19_9CLOTPLP-dependentaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12195PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	543.8178100585938	2	543.303124	1084.5917	-1.4487	-0.00078708	-0.27376	-0.00014873	-1.7224	-0.00093581	543.3030809527281	102.47	1.1837	101.79	101.54	102.72	-0.68459					47	23	3	0	0	0	0.027326	1	9411	9411		65.803	0	1	101080			19173	34644	15654	15677	21254	21254					0.05278315994382865
ILIIFIVGF	9	Unmodified	_ILIIFIVGF_					0	0	0		tr|A0A7D6W2C5|A0A7D6W2C5_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05820PE=4SV=1	tr|A0A7D6W2C5|A0A7D6W2C5_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05820PE=4SV=1	tr|A0A7D6W2C5|A0A7D6W2C5_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05820PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.3115234375	2	517.836071	1033.65759	-0.3839	-0.0001988	-4.1269	-0.0021371	-4.5108	-0.0023359	517.8337738387936	82.176	1.0959	79.88	79.584	80.68	-2.2963					37	21	2	0	0	0	0.027462	1	4628	4628		14.664	0	1	74054			19174	35426	15655	15678	21255	21255					0.1421075690723228
ILIIFIVGF	9	Unmodified	_ILIIFIVGF_					0	0	0		tr|A0A7D6W2C5|A0A7D6W2C5_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05820PE=4SV=1	tr|A0A7D6W2C5|A0A7D6W2C5_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05820PE=4SV=1	tr|A0A7D6W2C5|A0A7D6W2C5_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05820PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	517.836071	1033.65759	0.6247	0.00032349	-5.0145	-0.0025967	-4.3898	-0.0022732	517.8333864122168	81.635	1.2442	79.986	79.716	80.961	-1.6485	0.046167	-0.00054127	NaN	14.664	41	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65129			19175	35426	15655	15678							0.1421075690723228
ILIIIIVYV	9	Unmodified	_ILIIIIVYV_					0	0	0		tr|A0A7D6VQZ3|A0A7D6VQZ3_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00360PE=4SV=1	tr|A0A7D6VQZ3|A0A7D6VQZ3_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00360PE=4SV=1	tr|A0A7D6VQZ3|A0A7D6VQZ3_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00360PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8135986328125	2	529.864829	1057.7151	-0.42052	-0.00022282	-0.40564	-0.00021493	-0.82616	-0.00043775	530.3667241150448	39.085	0.13381	39.085	39.017	39.151	0					4	2	2	0	0	0	0.027462	1	2266	2266		21.702	7.0382	1	21686			19176	34881	15656	15679	21256	21256					0.18855599112771415
ILIIKFDNN	9	Unmodified	_ILIIKFDNN_					0	0	0			REV__tr|A0A7D6ZX58|A0A7D6ZX58_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20895PE=4SV=1	REV__tr|A0A7D6ZX58|A0A7D6ZX58_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20895PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3161010742188	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.6653	1	14267	14267		24.203	2.2429	1	202430	+		19177	32316	15657	15680	21257	21257					0.08222889028479585
ILIIMASFI	9	Unmodified	_ILIIMASFI_					0	0	0		tr|A0A7D6ZZ39|A0A7D6ZZ39_9CLOTCobalaminbiosynthesisproteinCobDOS=ClostridiumintestinaleOX=36845GN=cobDPE=3SV=1	tr|A0A7D6ZZ39|A0A7D6ZZ39_9CLOTCobalaminbiosynthesisproteinCobDOS=ClostridiumintestinaleOX=36845GN=cobDPE=3SV=1	tr|A0A7D6ZZ39|A0A7D6ZZ39_9CLOTCobalaminbiosynthesisproteinCobDOS=ClostridiumintestinaleOX=36845GN=cobDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	510.8150634765625	2	510.811739	1019.60893	1.0663	0.00054468	2.2821	0.0011657	3.3484	0.0017104	510.8128294751169	128.19	1.0362	127.96	127.49	128.53	-0.22697					40	20	3	0	0	0	0.65476	1	12575	12575		25.45	3.7478	1	158260			19178	35943	15658	15681	21258	21258					0.09990520275823656
ILIISKGEKIL	11	Unmodified	_ILIISKGEKIL_					0	0	0			REV__tr|A0A553SNV4|A0A553SNV4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_25170PE=4SV=1	REV__tr|A0A553SNV4|A0A553SNV4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_25170PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	409.60748291015625	3	409.607596	1225.80096	0.6889	0.00028218	0.24905	0.00010201	0.93795	0.00038419	409.60766459120623	104.29	12.102	103.72	103.28	115.38	-0.57639					699	244	5	0	0	0	0.67712	1	9821	9821		37.508	1.0614	1	1628000	+		19179	30460	15659	15682	21259	21259					0.19709139227666128
ILIISKGEKIL	11	Unmodified	_ILIISKGEKIL_					0	0	0			REV__tr|A0A553SNV4|A0A553SNV4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_25170PE=4SV=1	REV__tr|A0A553SNV4|A0A553SNV4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_25170PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	409.6074523925781	3	409.607596	1225.80096	1.1396	0.00046679	-0.24169	-9.9E-05	0.89792	0.00036779	409.6074659919173	107.95	5.8573	106.76	106.27	112.13	-1.1978					409	114	4	0	0	0	0.59615	1	7690	7690		45.022	2.1579	1	1037400	+		19180	30460	15659	15682	21260	21260					0.19709139227666128
ILIISKGEKIL	11	Unmodified	_ILIISKGEKIL_					0	0	0			REV__tr|A0A553SNV4|A0A553SNV4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_25170PE=4SV=1	REV__tr|A0A553SNV4|A0A553SNV4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_25170PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	409.6086120605469	3	409.607596	1225.80096	0.55097	0.00022568	0.25775	0.00010558	0.80871	0.00033125	409.60762934156605	108.64	8.1164	106.92	106.42	114.53	-1.7256					461	158	5	0	0	0	0.54114	1	9933	9933		50.034	6.3827	1	863570	+		19181	30460	15659	15682	21261	21261					0.19709139227666128
ILIKEGRLF	9	Unmodified	_ILIKEGRLF_					0	0	0			REV__nc|ENSG00000160310|P55345-6|PRMT2	REV__nc|ENSG00000160310|P55345-6|PRMT2	MULTI-MSMS	OvCa99_classI_Rep5	1	544.8458862304688	2	544.844959	1087.67537	2.2231	0.0012113	-0.25976	-0.00014153	1.9633	0.0010697	544.8447449561304	115.56	1.3856	115.56	115.16	116.55	0					95	29	5	0	0	0	0.11471	1	13190	13190		93.195	2.4188	1	2188400	+		19182	16247	15660	15683	21262	21262					0.1350347216209684
ILIKHLVKV	9	Unmodified	_ILIKHLVKV_					0	0	0		ENSG00000165895|ENST00000298815|ARHGAP42	ENSG00000165895|ENST00000298815|ARHGAP42	ENSG00000165895|ENST00000298815|ARHGAP42	MULTI-MSMS	OvCa99_classI_Rep5	1	531.875	2	531.87352	1061.73249	-0.50852	-0.00027047	-7.9937E-05	-4.2516E-08	-0.5086	-0.00027051	531.8734054342334	66.379	0.68044	66.379	66.059	66.739	0					33	16	3	0	0	0	0.16524	1	6152	6152		82.305	24.494	1	1037600			19183	6608	15661	15684	21263	21263					0.20408939438448215
ILIKNLNS	8	Unmodified	_ILIKNLNS_					0	0	0		tr|A0A7D6ZY15|A0A7D6ZY15_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00445PE=4SV=1	tr|A0A7D6ZY15|A0A7D6ZY15_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00445PE=4SV=1	tr|A0A7D6ZY15|A0A7D6ZY15_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00445PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.2491455078125	2	457.78711	913.559667	-0.12667	-5.7989E-05	-0.16908	-7.7405E-05	-0.29576	-0.00013539	457.78686600902273	58.166	0.90184	54.821	54.546	55.447	-3.3449					38	17	3	0	0	0	0.028476	1	3879	3879		7.6903	0	1	154080			19184	35906	15662	15685	21264	21264					0.09942948311243072
ILIKNLNS	8	Unmodified	_ILIKNLNS_					0	0	0		tr|A0A7D6ZY15|A0A7D6ZY15_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00445PE=4SV=1	tr|A0A7D6ZY15|A0A7D6ZY15_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00445PE=4SV=1	tr|A0A7D6ZY15|A0A7D6ZY15_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00445PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	457.78711	913.559667	0.17635	8.0731E-05	0.021707	9.9372E-06	0.19806	9.0668E-05	457.7869627133997	57.551	0.64516	54.759	54.477	55.122	-2.792	-0.030643	0.00013656	NaN	3.6843	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41250			19185	35906	15662	15685							0.09942948311243072
ILILALSHI	9	Unmodified	_ILILALSHI_					0	0	0		tr|A0A7D6VQY7|A0A7D6VQY7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03355PE=4SV=1	tr|A0A7D6VQY7|A0A7D6VQY7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03355PE=4SV=1	tr|A0A7D6VQY7|A0A7D6VQY7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03355PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	496.8296813964844	2	496.828778	991.643003	1.4547	0.00072276	-0.073364	-3.6449E-05	1.3814	0.00068631	496.82868474743657	148.53	2.5161	148.53	148.18	150.69	0					110	50	4	0	0	0	0.58665	1	17456	17456		33.516	0	1	2754700			19186	34879	15663	15686	21265	21265					0.14684684759083666
ILILINASLAL	11	Unmodified	_ILILINASLAL_					0	0	0			REV__ENSG00000181017|ENST00000641377|OR56B2P	REV__ENSG00000181017|ENST00000641377|OR56B2P	MULTI-SECPEP	OvCa9_classI_Rep4_	4	577.3671875	2	577.381374	1152.7482	-1.8943	-0.0010938	4.2017	0.002426	2.3074	0.0013322	577.884273649203	127.15	0.24875	125.72	125.59	125.84	-1.4357					6	4	2	0	0	0	0.022837	1	12118	12118		101.6	21.888	1	4651.9	+		19187	22213	15664	15687	21266	21266					0.17793181164847738
ILIMELKN	8	Unmodified	_ILIMELKN_					0	0	0		ENSG00000128052|ENST00000263923|KDR;nc|ENSG00000128052|P35968-3|KDR;nc|ENSG00000128052|P35968-2|KDR	ENSG00000128052|ENST00000263923|KDR	ENSG00000128052|ENST00000263923|KDR	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.3139953613281	2	487.291171	972.567789	2.6668	0.0012995	0.86852	0.00042322	3.5353	0.0017227	487.2913960361284	98.95	0.46951	98.95	98.725	99.195	0					20	11	3	0	0	0	0.028476	1	10885	10885		65.803	0	1	547250			19188	3864	15665	15688	21267	21267					0.08040759236359918
ILIMILFSV	9	Unmodified	_ILIMILFSV_					0	0	0			REV__tr|A0A553SHT1|A0A553SHT1_NIACIPhosphate/phosphite/phosphonateABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13460PE=3SV=1	REV__tr|A0A553SHT1|A0A553SHT1_NIACIPhosphate/phosphite/phosphonateABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13460PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	524.8286743164062	2	524.827389	1047.64023	0.16407	8.6107E-05	-0.32209	-0.00016904	-0.15802	-8.2933E-05	524.8271106271505	161.44	1.2185	161.44	161.06	162.28	0					81	23	5	0	0	0	0.63108	1	18955	18955		28.254	1.4582	1	1526900	+		19189	29836	15666	15689	21268	21268					0.11831093309933749
ILIMYQAHF	9	Unmodified	_ILIMYQAHF_					0	0	0			REV__tr|A0A553SLR5|A0A553SLR5_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21175PE=4SV=1	REV__tr|A0A553SLR5|A0A553SLR5_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21175PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.8574829101562	2	568.30207	1134.58959	1.9264	0.0010948	-2.7544	-0.0015653	-0.82801	-0.00047056	568.3003383967865	137.83	2.9114	137.83	137.4	140.31	0					111	60	4	0	0	0	0.027462	1	16350	16350		42.474	6.8562	1	1547900	+		19190	30257	15667	15690	21269	21269					0.02767563984912158
ILINEPAA	8	Unmodified	_ILINEPAA_					0	0	0		tr|A0A553SHN7|A0A553SHN7_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=walKPE=4SV=1	tr|A0A553SHN7|A0A553SHN7_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=walKPE=4SV=1	tr|A0A553SHN7|A0A553SHN7_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=walKPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	420.7465515136719	2	420.744911	839.475269	2.1957	0.00092382	0.19369	8.1494E-05	2.3894	0.0010053	420.74487327628344	134.35	0.50479	134.35	134.1	134.61	0					19	10	2	0	0	0	0.50674	1	15630	15630		76.847	11.043	1	380390			19191	33290	15668	15691	21270	21270					0.04910997494471303
ILINPRHTL	9	Unmodified	_ILINPRHTL_					0	0	0			REV__ENSG00000129450|ENST00000250360|SIGLEC9	REV__ENSG00000129450|ENST00000250360|SIGLEC9	MULTI-SECPEP	OvCa9_classI_Rep2	2	538.8626708984375	2	538.832383	1075.65021	-0.18763	-0.0001011	-3.5261	-0.0019	-3.7137	-0.0020011	538.8310803697539	132.01	0.53214	131.78	131.4	131.93	-0.22697					18	10	3	0	0	0	0.027462	1	12988	12988		37.159	0	1	42217	+		19192	18898	15669	15692	21271	21271					0.11541417359512707
ILIPEDFY	8	Unmodified	_ILIPEDFY_					0	0	0		tr|A0A553SHP3|A0A553SHP3_NIACIReplicativeDNAhelicaseOS=NialliacirculansOX=1397GN=dnaBPE=3SV=1	tr|A0A553SHP3|A0A553SHP3_NIACIReplicativeDNAhelicaseOS=NialliacirculansOX=1397GN=dnaBPE=3SV=1	tr|A0A553SHP3|A0A553SHP3_NIACIReplicativeDNAhelicaseOS=NialliacirculansOX=1397GN=dnaBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.3214416503906	2	505.265676	1008.5168	2.9606	0.0014959	-3.9089	-0.001975	-0.94827	-0.00047913	505.26376513962157	133.84	1.2829	132.32	132.05	133.33	-1.5257					42	25	2	0	0	0	0.028476	1	12937	12937		57.453	0	1	86312			19193	33294	15670	15693	21272	21272					0.012881334631401842
ILIPRMLLV	9	Unmodified	_ILIPRMLLV_					0	0	0		ENSG00000162733|ENST00000367921|DDR2;DDR2|p.I298Lfs*61|1|0.31|ENSG00000162733|chr1:162761246-162761247|-/TT|frameshift_variant;DDR2|p.I298Nfs*71|1|0.28|ENSG00000162733|chr1:162761247-162761248|-/ACTCAGATTTCTCTCTCCTTTTCCTCCTCTTC|frameshift_variant	ENSG00000162733|ENST00000367921|DDR2	ENSG00000162733|ENST00000367921|DDR2	MULTI-MSMS	OvCa99_classI_Rep5	1	534.3543090820312	2	534.354105	1066.69366	0.7321	0.0003912	1.5512	0.00082891	2.2833	0.0012201	534.3547545155976	140.47	0.8136	140.47	140.17	140.98	0					35	16	3	0	0	0	0.27546	2	16422	16399;16422		65.803	7.9919	1	218400			19194	6222	15671	15694	21273;21274	21274					0.1629789081243871
ILIQQVRKI	9	Unmodified	_ILIQQVRKI_					0	0	0		ENST00000425592.2_1_9:125524228-125524285:+|nuORF	ENST00000425592.2_1_9:125524228-125524285:+|nuORF	ENST00000425592.2_1_9:125524228-125524285:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.3290405273438	2	555.871508	1109.72846	2.1294	0.0011837	0.36203	0.00020124	2.4914	0.0013849	555.8716377470466	96.797	0.21253	96.797	96.668	96.881	0					6	4	2	0	0	0	0.027441	1	10615	10615		55.504	0	1	122980			19195	11721	15672	15695	21275	21275					0.17798849944756512
ILIREKRR	8	Unmodified	_ILIREKRR_					0	0	0		ENSG00000165113|ENST00000376371|GKAP1	ENSG00000165113|ENST00000376371|GKAP1	ENSG00000165113|ENST00000376371|GKAP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.35009765625	2	542.359099	1082.70365	2.269	0.0012306	3.3555	0.0018199	5.6245	0.0030505	542.3607488215488	95.097	0.55214	95.097	94.776	95.328	0					19	12	2	0	0	0	0.028476	1	10338	10338		31.955	0	1	472050			19196	6521	15673	15696	21276	21276					0.16560214862033718
ILIRLLAWV	9	Unmodified	_ILIRLLAWV_					0	0	0			REV__ENST00000566685.1_1_16:23478014-23478370:-|nuORF	REV__ENST00000566685.1_1_16:23478014-23478370:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	548.8646240234375	2	548.865695	1095.71684	1.4956	0.00082086	-3.5204	-0.0019322	-2.0248	-0.0011114	548.8635876207694	87.51	0.62404	87.51	87.257	87.881	0					30	14	3	0	0	0	0.64339	1	9290	9290		26.796	3.7536	1	1727300	+		19197	24327	15674	15697	21277	21277					0.17280652921408546
ILISKSLML	9	Unmodified	_ILISKSLML_					0	0	0		ENST00000370008.3_1_1:109351794-109352007:+|nuORF	ENST00000370008.3_1_1:109351794-109352007:+|nuORF	ENST00000370008.3_1_1:109351794-109352007:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	509.32318115234375	2	509.322471	1016.63039	1.6932	0.00086236	-0.46413	-0.00023639	1.229	0.00062597	509.3222483273032	129.75	3.5873	129.75	129.45	133.04	0					127	75	2	0	0	0	0.28934	2	15137	15137;15161		64.207	8.7031	1	9824000			19198	10914	15675	15698	21278;21279	21278					0.12273905304539312
ILISVSAIN	9	Unmodified	_ILISVSAIN_					0	0	0		ENST00000510863.1_1_4:77028861-77033669:+|nuORF;nc|ENSG00000156219|Q13508-2|ART3;nc|ENSG00000156219|Q13508-3|ART3;ENSG00000156219|ENST00000355810|ART3	ENST00000510863.1_1_4:77028861-77033669:+|nuORF	ENST00000510863.1_1_4:77028861-77033669:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	465.2852478027344	2	465.286943	928.559333	-1.6358	-0.00076114	-1.5296	-0.00071171	-3.1655	-0.0014728	465.28614320640764	142.28	1.4816	142.05	141.52	143	-0.22697					68	29	3	0	0	0	0.53483	1	14250	14250		39.253	5.0803	1	102120			19199	5827	15676	15699	21280	21280					0.09219528591381732
ILITLVMVI	9	Unmodified	_ILITLVMVI_					0	0	0		tr|A0A553SU41|A0A553SU41_NIACIPutativeproline/betainetransporterOS=NialliacirculansOX=1397GN=CEQ21_06300PE=3SV=1	tr|A0A553SU41|A0A553SU41_NIACIPutativeproline/betainetransporterOS=NialliacirculansOX=1397GN=CEQ21_06300PE=3SV=1	tr|A0A553SU41|A0A553SU41_NIACIPutativeproline/betainetransporterOS=NialliacirculansOX=1397GN=CEQ21_06300PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.2865295410156	2	507.835214	1013.65588	2.3445	0.0011906	3.9049	0.0019831	6.2495	0.0031737	507.8370507207004	80.499	0.67966	80.499	80.314	80.993	0					30	15	3	0	0	0	0.027462	1	8237	8237		12.959	0	1	483540			19200	34567	15677	15700	21281	21281					0.1495937982696205
ILITQELEI	9	Unmodified	_ILITQELEI_					0	0	0		nc|ENSG00000133863|Q9BXT5|TEX15;ENSG00000133863|ENST00000643185|TEX15	nc|ENSG00000133863|Q9BXT5|TEX15	nc|ENSG00000133863|Q9BXT5|TEX15	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.245849609375	2	536.31844	1070.62233	0.92983	0.00049869	-3.5702	-0.0019148	-2.6404	-0.0014161	536.3158963519695	114.78	0.34528	113.72	113.5	113.85	-1.055					8	6	2	0	0	0	0.027137	1	8495	8495		87.696	21.267	1	8743.3			19201	4241	15678	15701	21282	21282					0.08984049588752896
ILIVELFKYT	10	Unmodified	_ILIVELFKYT_					0	0	0			REV__ENST00000475768.1_1_11:115821075-115821177:-|nuORF	REV__ENST00000475768.1_1_11:115821075-115821177:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	619.869140625	2	619.873382	1237.73221	-2.7857	-0.0017268	-3.6209	-0.0022445	-6.4066	-0.0039713	619.8709153162803	147.4	3.9416	146.45	144.36	148.3	-0.9512					241	78	4	0	0	0	0.73378	1	12542	12542		26.693	3.1702	1	225770	+		19202	26357	15679	15702	21283	21283					0.12285474927966789
ILIVFIAVSG	10	Unmodified	_ILIVFIAVSG_					0	0	0			REV__L1PA8A_dup160|chr1:247133953-247136664:+|1.5135014545884105|0.4971293307696565|1.61|429.0|157|3|anti-sense	REV__L1PA8A_dup160|chr1:247133953-247136664:+|1.5135014545884105|0.4971293307696565|1.61|429.0|157|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	516.3275756835938	2	516.328611	1030.64267	1.8915	0.00097663	-2.3464	-0.0012115	-0.4549	-0.00023488	516.3273063704338	111.37	1.3837	110.26	109.9	111.29	-1.1038					71	27	4	0	0	0	0.26259	1	8096	8096		85.359	8.0419	1	205270	+		19203	28581	15680	15703	21284	21284					0.1285726503922433
ILIWGDQN	8	Unmodified	_ILIWGDQN_					0	0	0		nc|ENSG00000038532|Q2KHT3-2|CLEC16A;CLEC16A|p.Q832Rfs*57|1|0.03|ENSG00000038532|chr16:11126000-11126000|A/-|frameshift_variant;ENSG00000038532|ENST00000409790|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2935485839844	2	479.753267	957.491981	1.7193	0.00082484	0.41295	0.00019811	2.1323	0.001023	479.7533054799955	87.551	0.57927	87.551	87.174	87.754	0					18	13	2	0	0	0	0.028476	1	9233	9233		35.618	0	1	883250			19204	14868	15681	15704	21285	21285					0.01153498380426754
ILIWGDQN	8	Unmodified	_ILIWGDQN_					0	0	0		nc|ENSG00000038532|Q2KHT3-2|CLEC16A;CLEC16A|p.Q832Rfs*57|1|0.03|ENSG00000038532|chr16:11126000-11126000|A/-|frameshift_variant;ENSG00000038532|ENST00000409790|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	479.753267	957.491981	1.5091	0.00072401	-2.0516	-0.00098426	-0.54246	-0.00026025	479.75248370631306	88.832	1.4301	87.464	87.086	88.516	-1.3676	0.040744	-0.0018168	NaN	51.335	79	28	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118300			19205	14868	15681	15704							0.01153498380426754
ILIWGDQN	8	Unmodified	_ILIWGDQN_					0	0	0		nc|ENSG00000038532|Q2KHT3-2|CLEC16A;CLEC16A|p.Q832Rfs*57|1|0.03|ENSG00000038532|chr16:11126000-11126000|A/-|frameshift_variant;ENSG00000038532|ENST00000409790|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	479.753267	957.491981	-0.14621	-7.0143E-05	0.45774	0.0002196	0.31153	0.00014946	479.75326961006795	89.439	1.1653	87.308	87.044	88.209	-2.1309	-0.11544	0.00059091	NaN	51.335	46	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202760			19206	14868	15681	15704							0.01153498380426754
ILIWGDQN	8	Unmodified	_ILIWGDQN_					0	0	0		nc|ENSG00000038532|Q2KHT3-2|CLEC16A;CLEC16A|p.Q832Rfs*57|1|0.03|ENSG00000038532|chr16:11126000-11126000|A/-|frameshift_variant;ENSG00000038532|ENST00000409790|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	479.753267	957.491981	0.62	0.00029745	-0.66163	-0.00031742	-0.041627	-1.9971E-05	479.7528894243748	89.945	1.162	87.37	87.1	88.262	-2.575	-0.053384	-0.00048313	NaN	51.335	44	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141390			19207	14868	15681	15704							0.01153498380426754
ILIYIGVYF	9	Unmodified	_ILIYIGVYF_					0	0	0			REV__ENSG00000110651|ENST00000263645|CD81	REV__ENSG00000110651|ENST00000263645|CD81	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.3200073242188	2	550.823161	1099.63177	1.8953	0.001044	-0.42072	-0.00023174	1.4746	0.00081223	550.8228648577568	85.751	0.6931	85.751	85.38	86.073	0					44	16	4	0	0	0	0.027462	1	9056	9056		29.842	0	1	2279400	+		19208	17992	15682	15705	21286	21286					0.08593862664952212
ILKAAGRLA	9	Unmodified	_ILKAAGRLA_					0	0	0		tr|A0A553SI53|A0A553SI53_NIACIPhosphateacetyltransferaseOS=NialliacirculansOX=1397GN=ptaPE=3SV=1	tr|A0A553SI53|A0A553SI53_NIACIPhosphateacetyltransferaseOS=NialliacirculansOX=1397GN=ptaPE=3SV=1	tr|A0A553SI53|A0A553SI53_NIACIPhosphateacetyltransferaseOS=NialliacirculansOX=1397GN=ptaPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.7677917480469	2	456.803094	911.591636	0.3709	0.00016943	-1.0701	-0.00048881	-0.69917	-0.00031938	456.8022498438905	61.312	0.48653	57.882	57.644	58.131	-3.43					11	9	2	0	0	0	0.027462	1	4217	4217		11.511	7.1947	1	14197			19209	33346	15683	15706	21287	21287					0.13230360785019002
ILKAAGRLA	9	Unmodified	_ILKAAGRLA_					0	0	0		tr|A0A553SI53|A0A553SI53_NIACIPhosphateacetyltransferaseOS=NialliacirculansOX=1397GN=ptaPE=3SV=1	tr|A0A553SI53|A0A553SI53_NIACIPhosphateacetyltransferaseOS=NialliacirculansOX=1397GN=ptaPE=3SV=1	tr|A0A553SI53|A0A553SI53_NIACIPhosphateacetyltransferaseOS=NialliacirculansOX=1397GN=ptaPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	456.803094	911.591636	0.2204	0.00010068	-0.67308	-0.00030746	-0.45268	-0.00020679	456.8026278404125	60.443	0.475	57.672	57.448	57.923	-2.7702	-0.1049	9.8976E-05	NaN	11.511	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16386			19210	33346	15683	15706							0.13230360785019002
ILKAKLKHF	9	Unmodified	_ILKAKLKHF_					0	0	0			REV__ENSG00000156172|ENST00000286688|CFAP418	REV__ENSG00000156172|ENST00000286688|CFAP418	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.8294677734375	2	549.363319	1096.71209	0.42941	0.0002359	-2.905	-0.0015959	-2.4755	-0.00136	549.3618459792121	81.129	0.25449	81.129	80.993	81.248	0					8	5	2	0	0	0	0.027462	1	8330	8330		40.573	11.403	1	98994	+		19211	20465	15684	15707	21288	21288					0.16759768778638318
ILKASISEL	9	Unmodified	_ILKASISEL_					0	0	0			REV__tr|A0A7D6VY60|A0A7D6VY60_9CLOTCationtransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_11460PE=4SV=1	REV__tr|A0A7D6VY60|A0A7D6VY60_9CLOTCationtransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_11460PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	488.285888671875	2	487.30005	972.585547	-0.073151	-3.5646E-05	-0.45458	-0.00022152	-0.52773	-0.00025716	487.2996198194215	102.11	0.63067	99.911	99.676	100.31	-2.1994					19	11	2	0	0	0	0.027462	1	9173	9173		40.778	10.937	1	29897	+		19212	31809	15685	15708	21289	21289					0.09815797762848888
ILKASISEL	9	Unmodified	_ILKASISEL_					0	0	0			REV__tr|A0A7D6VY60|A0A7D6VY60_9CLOTCationtransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_11460PE=4SV=1	REV__tr|A0A7D6VY60|A0A7D6VY60_9CLOTCationtransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_11460PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	487.30005	972.585547	-0.80478	-0.00039217	1.1316	0.00055145	0.32686	0.00015928	487.3005207624501	100.65	0.59596	99.815	99.608	100.2	-0.83051	-0.047765	0.0008366	NaN	40.778	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25208	+		19213	31809	15685	15708							0.09815797762848888
ILKAVEVTG	9	Unmodified	_ILKAVEVTG_					0	0	0		tr|A0A7D6ZXI8|A0A7D6ZXI8_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13445PE=4SV=1	tr|A0A7D6ZXI8|A0A7D6ZXI8_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13445PE=4SV=1	tr|A0A7D6ZXI8|A0A7D6ZXI8_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13445PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	465.2851257324219	2	465.286943	928.559333	-2.7433	-0.0012764	-0.30458	-0.00014172	-3.0479	-0.0014181	465.28670210862947	142.67	1.0374	141.66	141.38	142.42	-1.0106					57	20	4	0	0	0	0.6653	1	11851	11851		24.203	1.1603	1	145060			19214	35882	15686	15709	21290	21290					0.09219528591381732
ILKDLLPETI	10	Unmodified	_ILKDLLPETI_					0	0	0		nc|ENSG00000096717|Q96EB6-2|SIRT1;ENSG00000096717|ENST00000212015|SIRT1	nc|ENSG00000096717|Q96EB6-2|SIRT1	nc|ENSG00000096717|Q96EB6-2|SIRT1	MULTI-SECPEP	OvCa9_classI_Rep2	2	578.333740234375	2	577.855189	1153.69583	-1.8277	-0.0010561	0.38827	0.00022436	-1.4394	-0.00083176	577.856014351003	117.73	0.99277	117.59	117.29	118.28	-0.14755					24	19	2	0	0	0	0.02717	1	11275	11275		12.207	4.4022	1	13982			19215	1950	15687	15710	21291	21291					0.12512598031230482
ILKDLLPETI	10	Unmodified	_ILKDLLPETI_					0	0	0		nc|ENSG00000096717|Q96EB6-2|SIRT1;ENSG00000096717|ENST00000212015|SIRT1	nc|ENSG00000096717|Q96EB6-2|SIRT1	nc|ENSG00000096717|Q96EB6-2|SIRT1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	577.855189	1153.69583	-0.80924	-0.00046762	0.26342	0.00015222	-0.54582	-0.0003154	577.8560211860347	118.56	0.94309	117.53	117.24	118.18	-1.0271	-0.023658	-0.00050475	NaN	12.207	23	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15078			19216	1950	15687	15710							0.12512598031230482
ILKDLLPETI	10	Unmodified	_ILKDLLPETI_					0	0	0		nc|ENSG00000096717|Q96EB6-2|SIRT1;ENSG00000096717|ENST00000212015|SIRT1	nc|ENSG00000096717|Q96EB6-2|SIRT1	nc|ENSG00000096717|Q96EB6-2|SIRT1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	577.855189	1153.69583	-1.8682	-0.0010796	1.1585	0.00066943	-0.70976	-0.00041014	578.3569815480328	118.89	0.57274	117.55	117.26	117.83	-1.3444	-0.0076253	0.00052968	NaN	12.207	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20603			19217	1950	15687	15710							0.12512598031230482
ILKENSAKVD	10	Unmodified	_ILKENSAKVD_					0	0	0			REV__tr|A0A7D6ZHD8|A0A7D6ZHD8_9CLOTN-acetylmuramicacid6-phosphateetheraseOS=ClostridiumintestinaleOX=36845GN=murQPE=3SV=1	REV__tr|A0A7D6ZHD8|A0A7D6ZHD8_9CLOTN-acetylmuramicacid6-phosphateetheraseOS=ClostridiumintestinaleOX=36845GN=murQPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.8184204101562	2	558.816596	1115.61864	0.090881	5.0786E-05	-0.054252	-3.0317E-05	0.036629	2.0469E-05	558.8161517620805	45.974	2.6143	42.901	42.613	45.228	-3.0724					111	50	3	0	0	0	0.48198	1	2458	2458		56.721	1.9447	1	5957700	+		19218	32021	15688	15711	21292	21292					0.06545379814906482
ILKERKAMLE	10	Unmodified	_ILKERKAMLE_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-MSMS	OvCa99_classI_Rep5	1	615.8657836914062	2	615.865566	1229.71658	2.0018	0.0012329	0.11095	6.8329E-05	2.1128	0.0013012	615.8655539218626	106.64	0.57051	106.64	106.36	106.93	0					34	12	5	0	0	0	0.44431	1	12032	12032		62.107	0	1	1504800	+		19219	21856	15689	15712	21293	21293					0.11090865139249217
ILKESSEKK	9	Unmodified	_ILKESSEKK_					0	0	0		tr|A0A7D6ZVR3|A0A7D6ZVR3_9CLOTCyclodeaminase/cyclohydrolasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14725PE=4SV=1	tr|A0A7D6ZVR3|A0A7D6ZVR3_9CLOTCyclodeaminase/cyclohydrolasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14725PE=4SV=1	tr|A0A7D6ZVR3|A0A7D6ZVR3_9CLOTCyclodeaminase/cyclohydrolasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14725PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.8062744140625	2	531.313689	1060.61282	-1.5992	-0.0008497	1.0105	0.00053689	-0.58875	-0.00031281	531.3141891060939	40.402	1.5101	37.448	37.213	38.723	-2.9541					71	28	4	0	0	0	0.027461	1	1880	1880		49.442	10.635	1	575580			19220	35810	15690	15713	21294	21294					0.0849428130322849
ILKESSEKK	9	Unmodified	_ILKESSEKK_					0	0	0		tr|A0A7D6ZVR3|A0A7D6ZVR3_9CLOTCyclodeaminase/cyclohydrolasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14725PE=4SV=1	tr|A0A7D6ZVR3|A0A7D6ZVR3_9CLOTCyclodeaminase/cyclohydrolasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14725PE=4SV=1	tr|A0A7D6ZVR3|A0A7D6ZVR3_9CLOTCyclodeaminase/cyclohydrolasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14725PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	531.313689	1060.61282	-0.97724	-0.00051922	0.80702	0.00042878	-0.17022	-9.0441E-05	531.3139557943819	40.186	1.1858	37.477	37.252	38.438	-2.7097	0.014383	-9.2331E-05	NaN	49.442	49	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184340			19221	35810	15690	15713							0.0849428130322849
ILKFFSSAL	9	Unmodified	_ILKFFSSAL_					0	0	0		ENST00000292433.3_1_19:13265195-13265537:+|nuORF	ENST00000292433.3_1_19:13265195-13265537:+|nuORF	ENST00000292433.3_1_19:13265195-13265537:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.3092651367188	2	513.305136	1024.59572	0.69558	0.00035704	4.2716	0.0021926	4.9672	0.0025497	513.307305776297	86.672	1.6901	84.045	83.663	85.353	-2.6269					74	33	4	0	0	0	0.13482	3	7346	7336;7346;7358		87.754	13.648	1	622300			19222	10101	15691	15714	21295;21296;21297	21296					0.08440405488090619
ILKFFSSAL	9	Unmodified	_ILKFFSSAL_					0	0	0		ENST00000292433.3_1_19:13265195-13265537:+|nuORF	ENST00000292433.3_1_19:13265195-13265537:+|nuORF	ENST00000292433.3_1_19:13265195-13265537:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	513.305136	1024.59572	-1.269	-0.0006514	7.2796	0.0037367	6.0106	0.0030853	513.3088131866907	85.528	1.6635	84.038	83.505	85.168	-1.4907	-0.025782	0.00012279	NaN	87.754	91	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	416350			19223	10101	15691	15714							0.08440405488090619
ILKFFSSAL	9	Unmodified	_ILKFFSSAL_					0	0	0		ENST00000292433.3_1_19:13265195-13265537:+|nuORF	ENST00000292433.3_1_19:13265195-13265537:+|nuORF	ENST00000292433.3_1_19:13265195-13265537:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	513.305136	1024.59572	-0.82173	-0.0004218	7.3404	0.0037679	6.5187	0.0033461	513.30888737453	86.328	2.0295	84.108	83.735	85.765	-2.2204	0.044324	0.0001852	NaN	87.754	101	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	779080			19224	10101	15691	15714							0.08440405488090619
ILKFRTLAS	9	Unmodified	_ILKFRTLAS_					0	0	0			REV__nc|ENSG00000140403|Q8WW22-3|DNAJA4	REV__nc|ENSG00000140403|Q8WW22-3|DNAJA4	MULTI-MSMS	OvCa9_classI_Rep2	2	524.8267822265625	2	524.829309	1047.64407	-4.3888	-0.0023034	0.2202	0.00011557	-4.1686	-0.0021878	524.8292785030237	156.45	1.4045	156.23	155.89	157.3	-0.22696					98	36	4	0	0	0	0.62352	2	15897	15897;15926		29.15	9.7896	1	556080	+		19225	28894	15692	15715	21298;21299	21298					0.12214899127980061
ILKFRTLAS	9	Unmodified	_ILKFRTLAS_					0	0	0			REV__nc|ENSG00000140403|Q8WW22-3|DNAJA4	REV__nc|ENSG00000140403|Q8WW22-3|DNAJA4	MULTI-MSMS	OvCa9_classI_Rep3	3	524.8265991210938	2	524.829309	1047.64407	-6.4209	-0.0033699	2.2692	0.001191	-4.1517	-0.0021789	524.8303693371411	156.49	1.5557	155.32	154.95	156.51	-1.1687					100	33	5	0	0	0	0.55588	1	13445	13445		37.159	0.71236	1	1025700	+		19226	28894	15692	15715	21300	21300					0.12214899127980061
ILKFSKEKN	9	Unmodified	_ILKFSKEKN_					0	0	0			REV__tr|A0A7D6VYD5|A0A7D6VYD5_9CLOTacylphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_15505PE=3SV=1	REV__tr|A0A7D6VYD5|A0A7D6VYD5_9CLOTacylphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_15505PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8297729492188	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.5811	1	11789	11789		34.173	5.0025	1	308210	+		19227	31817	15693	15716	21301	21301					0.10094577919812764
ILKFVARN	8	Unmodified	_ILKFVARN_					0	0	0		nc|ENSG00000196296|O14983-3|ATP2A1;ENSG00000196296|ENST00000395503|ATP2A1;nc|ENSG00000196296|O14983|ATP2A1	nc|ENSG00000196296|O14983-3|ATP2A1	nc|ENSG00000196296|O14983-3|ATP2A1	MULTI-MSMS	OvCa9_classI_Rep2	2	480.8006591796875	2	480.803094	959.591636	-3.5276	-0.0016961	-0.80978	-0.00038934	-4.3374	-0.0020854	480.80256125573777	150.83	1.6209	150.61	150.17	151.79	-0.22696					93	32	4	0	0	0	0.75991	1	15321	15321		21.702	0	1	676150			19228	8587	15694	15717	21302	21302					0.1102236078503438
ILKGVILLI	9	Unmodified	_ILKGVILLI_					0	0	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-MSMS	OvCa99_classI_Rep5	1	491.36444091796875	2	491.357171	980.699789	1.5137	0.00074377	0.7392	0.00036321	2.2529	0.001107	491.3574608885595	135.19	3.3045	135.19	134.86	138.16	0					155	70	4	0	0	0	0.071436	5	15749	15749;15774;15799;15822;15848		106.42	17.533	1	3309300			19229	2767	15695	15718	21303;21304;21305;21306;21307	21303					0.20866732315619174
ILKGVILVI	9	Unmodified	_ILKGVILVI_					0	0	0		nc|ENSG00000169762|Q6NXT6-2|TAPT1;ENSG00000169762|ENST00000405303|TAPT1;ENST00000511866.6_1_4:16191890-16198306:-|nuORF;ENST00000505317.1_1_4:16192911-16193136:-|nuORF	nc|ENSG00000169762|Q6NXT6-2|TAPT1	nc|ENSG00000169762|Q6NXT6-2|TAPT1	MULTI-MSMS	OvCa99_classI_Rep5	1	484.3504638671875	2	484.349346	966.684139	1.768	0.00085631	0.61186	0.00029636	2.3798	0.0011527	484.3495251639189	125.98	0.79812	125.98	125.76	126.56	0					33	16	3	0	0	0	0.14739	1	14561	14561		85.359	5.4203	1	189580			19230	7037	15696	15719	21308	21308					0.1994644579855276
ILKGVRDL	8	Unmodified	_ILKGVRDL_					0	0	0		tr|A0A7D7A0E8|A0A7D7A0E8_9CLOTCNhydrolasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09690PE=4SV=1	tr|A0A7D7A0E8|A0A7D7A0E8_9CLOTCNhydrolasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09690PE=4SV=1	tr|A0A7D7A0E8|A0A7D7A0E8_9CLOTCNhydrolasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09690PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	457.7796936035156	2	457.295102	912.575651	-0.99609	-0.00045551	0.84886	0.00038818	-0.14723	-6.7328E-05	457.2953161071531	50.755	1.1652	47.582	47.256	48.421	-3.1734					47	22	3	0	0	0	0.028476	1	2998	2998		31.955	20.444	1	230400			19231	35994	15697	15720	21309	21309					0.11586654548113984
ILKGVRDL	8	Unmodified	_ILKGVRDL_					0	0	0		tr|A0A7D7A0E8|A0A7D7A0E8_9CLOTCNhydrolasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09690PE=4SV=1	tr|A0A7D7A0E8|A0A7D7A0E8_9CLOTCNhydrolasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09690PE=4SV=1	tr|A0A7D7A0E8|A0A7D7A0E8_9CLOTCNhydrolasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09690PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	457.295102	912.575651	-0.24961	-0.00011415	0.17508	8.0064E-05	-0.074534	-3.4084E-05	457.2950189627686	50.452	1.1902	47.658	47.281	48.472	-2.794	0.038049	-0.00026442	NaN	31.955	48	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79566			19232	35994	15697	15720							0.11586654548113984
ILKHHFVSI	9	Unmodified	_ILKHHFVSI_					0	0	0			REV__ENSG00000214814|ENST00000522917|FER1L6	REV__ENSG00000214814|ENST00000522917|FER1L6	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.2711791992188	2	547.329476	1092.6444	1.7276	0.00094554	0.016434	8.9948E-06	1.744	0.00095454	547.3291745942273	91.37	0.45107	91.37	91.174	91.625	0					24	10	3	0	0	0	0.027462	1	9812	9812		24.203	1.1603	1	686220	+		19233	23299	15698	15721	21310	21310					0.10178318847852097
ILKHHFVSI	9	Unmodified	_ILKHHFVSI_					0	0	0			REV__ENSG00000214814|ENST00000522917|FER1L6	REV__ENSG00000214814|ENST00000522917|FER1L6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	547.329476	1092.6444	-1.7054	-0.00093341	-1.7181	-0.00094036	-3.4235	-0.0018738	547.328623931352	93.584	0.45036	91.623	91.279	91.729	-1.9617	0.12612	-0.0017043	NaN	17.365	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8347.6	+		19234	23299	15698	15721							0.10178318847852097
ILKIHELW	8	Unmodified	_ILKIHELW_					0	0	0			REV__nc|ENSG00000087053|Q13614-2|MTMR2	REV__nc|ENSG00000087053|Q13614-2|MTMR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.2896728515625	2	526.318577	1050.6226	1.4228	0.00074885	-0.058167	-3.0614E-05	1.3646	0.00071824	526.318039372343	111.05	0.39774	111.05	110.85	111.24	0					12	8	2	0	0	0	0.028476	1	12613	12613		47.916	0	1	58812	+		19235	17154	15699	15722	21311	21311					0.09931514099253036
ILKKAAAS	8	Unmodified	_ILKKAAAS_					0	0	0			REV__nc|ENSG00000196136|P01011-2|SERPINA3	REV__nc|ENSG00000196136|P01011-2|SERPINA3	MULTI-MSMS	OvCa9_classI_Rep2	2	401.2611083984375	2	401.263271	800.511988	1.296	0.00052003	-4.2066	-0.001688	-2.9106	-0.0011679	401.26147123184654	136.26	1.7613	136.04	135.22	136.99	-0.22696					76	35	3	0	0	0	0.74394	2	13539	13539;13587		19.36	0.81615	1	533840	+		19236	22788	15700	15723	21312;21313	21312					0.10375294111031508
ILKKAAAS	8	Unmodified	_ILKKAAAS_					0	0	0			REV__nc|ENSG00000196136|P01011-2|SERPINA3	REV__nc|ENSG00000196136|P01011-2|SERPINA3	MULTI-MSMS	OvCa9_classI_Rep3	3	401.26226806640625	2	401.263271	800.511988	-0.21441	-8.6037E-05	-2.9352	-0.0011778	-3.1496	-0.0012638	401.26203375308216	137.05	1.2653	135.96	135.51	136.78	-1.0858					61	25	3	0	0	0	0.74394	1	11140	11140		13.775	4.3048	1	224680	+		19237	22788	15700	15723	21314	21314					0.10375294111031508
ILKKCDKPI	9	Unmodified	_ILKKCDKPI_					0	0	0			REV__tr|A0A7D6VRQ5|A0A7D6VRQ5_9CLOTTypeVIIsecretionproteinEssCOS=ClostridiumintestinaleOX=36845GN=essCPE=4SV=1	REV__tr|A0A7D6VRQ5|A0A7D6VRQ5_9CLOTTypeVIIsecretionproteinEssCOS=ClostridiumintestinaleOX=36845GN=essCPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.766357421875	2	529.325545	1056.63654	1.2707	0.00067259	-2.2549	-0.0011936	-0.98423	-0.00052098	529.3241319267441	146.87	0.58917	146.87	146.57	147.16	0					21	11	2	0	0	0	0.027455	1	17168	17168		51.335	10.763	1	102220	+		19238	31435	15701	15724	21315	21315					0.11048423536067276
ILKLIDHFI	9	Unmodified	_ILKLIDHFI_					0	0	0			REV__tr|A0A553SNE8|A0A553SNE8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24310PE=4SV=1	REV__tr|A0A553SNE8|A0A553SNE8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24310PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	556.322509765625	2	556.347335	1110.68012	0.74342	0.0004136	-0.76097	-0.00042336	-0.017547	-9.7625E-06	556.3469199396263	127.24	1.8757	126.16	125.02	126.9	-1.0715					44	35	3	0	0	0	0.027462	1	9906	9906		34.173	3.6689	1	39382	+		19239	30415	15702	15725	21316	21316					0.12920356304834968
ILKLNLTK	8	Unmodified	_ILKLNLTK_					0	0	0		ENSG00000173988|ENST00000595396|LRRC63	ENSG00000173988|ENST00000595396|LRRC63	ENSG00000173988|ENST00000595396|LRRC63	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.27740478515625	2	471.820953	941.627353	0.41966	0.000198	-0.56162	-0.00026498	-0.14196	-6.698E-05	471.8205412591262	62.837	0.28978	59.379	59.16	59.45	-3.4577					7	5	2	0	0	0	0.028476	1	4372	4372		0.99688	0	1	11945			19240	7430	15703	15726	21317	21317					0.15420398242042666
ILKLTQTSPPL	11	Unmodified	_ILKLTQTSPPL_					0	0	0			REV__nc|ENSG00000165409|P16473|TSHR	REV__nc|ENSG00000165409|P16473|TSHR	MULTI-MSMS	OvCa9_classI_Rep4_	4	605.8709106445312	2	605.873914	1209.73327	-4.8731	-0.0029525	1.7175	0.0010406	-3.1556	-0.0019119	605.8747875580638	157.58	1.169	156.04	155.73	156.9	-1.545					92	31	4	0	0	0	0.72064	1	15587	15587		22.58	5.2147	1	205220	+		19241	21086	15704	15727	21318	21318					0.13679689296850484
ILKPHRAK	8	Unmodified	_ILKPHRAK_					0	0	0		ENSG00000196152|ENST00000342483|ZNF79	ENSG00000196152|ENST00000342483|ZNF79	ENSG00000196152|ENST00000342483|ZNF79	MULTI-MSMS	OvCa99_classI_Rep5	1	481.81378173828125	2	481.816536	961.618519	0.63652	0.00030669	-4.3932	-0.0021167	-3.7567	-0.0018101	481.81479588639235	160.92	2.1046	160.92	159.66	161.77	0					71	41	3	0	0	0	0.72922	2	18742	18742;18818		37.028	8.7742	1	146960			19242	8569	15705	15728	21319;21320	21319					0.1361746939621753
ILKPLLVKGG	10	Unmodified	_ILKPLLVKGG_					0	0	0			REV__nc|ENSG00000254087|P07948-2|LYN	REV__nc|ENSG00000254087|P07948-2|LYN	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.8226318359375	2	519.357702	1036.70085	1.5757	0.00081834	0.64137	0.0003331	2.217	0.0011514	519.3579176108135	136.65	0.95801	136.65	136.35	137.3	0					35	19	3	0	0	0	0.026849	1	15968	15968		32.812	3.6629	1	121360	+		19243	23513	15706	15729	21321	21321					0.1839694668451557
ILKPRKAK	8	Unmodified	_ILKPRKAK_					0	0	0		nc|ENSG00000086848|Q9H6U8-2|ALG9;nc|ENSG00000086848|Q9H6U8-4|ALG9;nc|ENSG00000086848|Q9H6U8|ALG9;ENSG00000086848|ENST00000616540|ALG9	nc|ENSG00000086848|Q9H6U8-2|ALG9	nc|ENSG00000086848|Q9H6U8-2|ALG9	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.7572937011719	2	477.334562	952.65457	1.4129	0.00067441	0.59108	0.00028214	2.0039	0.00095655	477.33468408257625	93.532	0.49445	93.532	93.346	93.841	0					22	11	3	0	0	0	0.028476	1	10138	10138		3.9852	0	1	1373000			19244	1755	15707	15730	21322	21322					0.17634926573077792
ILKRIKVA	8	Unmodified	_ILKRIKVA_					0	0	0			REV__tr|A0A7D6ZYS4|A0A7D6ZYS4_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_17565PE=4SV=1	REV__tr|A0A7D6ZYS4|A0A7D6ZYS4_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_17565PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.7881774902344	2	470.836937	939.659321	-0.18535	-8.7269E-05	1.7895	0.00084257	1.6042	0.0007553	470.83765800709915	40.875	0.62558	37.92	37.58	38.205	-2.9541					13	11	2	0	0	0	0.028476	1	1777	1777		20.482	0	1	10875	+		19245	32387	15708	15731	21323	21323					0.18707810715841333
ILKRKLHS	8	Unmodified	_ILKRKLHS_					0	0	0		tr|A0A7D6W2Q5|A0A7D6W2Q5_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07225PE=4SV=1	tr|A0A7D6W2Q5|A0A7D6W2Q5_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07225PE=4SV=1	tr|A0A7D6W2Q5|A0A7D6W2Q5_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07225PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.2861328125	2	497.829643	993.644734	0.30182	0.00015026	-0.52392	-0.00026082	-0.2221	-0.00011057	497.8292193725871	63.184	0.55814	63.184	62.976	63.534	0					31	13	3	0	0	0	0.028476	1	5689	5689		44.117	13.613	1	1612600			19246	35435	15709	15732	21324	21324					0.14765738567689368
ILKSLYTAKAS	11	Unmodified	_ILKSLYTAKAS_					0	0	0			REV__chr1:32768775-32770221|147|33.14|0.33|6.65|+|0|KIAA1522,None|2	REV__chr1:32768775-32770221|147|33.14|0.33|6.65|+|0|KIAA1522,None|2	MULTI-MSMS	OvCa9_classI_Rep2	2	597.856201171875	2	597.858264	1193.70197	-3.1766	-0.0018991	0.037639	2.2503E-05	-3.1389	-0.0018766	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.65947	1	14852	14852		39.253	4.1008	1	436470	+		19247	15825	15710	15733	21325	21325					0.11287116262769814
ILKTSKIQDK	10	Unmodified	_ILKTSKIQDK_					0	0	0		tr|A0A7D6ZYG4|A0A7D6ZYG4_9CLOTSelenium-dependentxanthinedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=xdhPE=3SV=1	tr|A0A7D6ZYG4|A0A7D6ZYG4_9CLOTSelenium-dependentxanthinedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=xdhPE=3SV=1	tr|A0A7D6ZYG4|A0A7D6ZYG4_9CLOTSelenium-dependentxanthinedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=xdhPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.3291625976562	2	587.363713	1172.71287	-0.28592	-0.00016794	-3.3507	-0.0019681	-3.6366	-0.002136	587.3609947159207	60.456	0.24073	60.456	60.277	60.518	0					8	5	2	0	0	0	0.027088	1	5255	5255		19.997	9.1312	1	121820			19248	35918	15711	15734	21326	21326					0.13342518637023204
ILKTWVHL	8	Unmodified	_ILKTWVHL_					0	0	0			REV__ENST00000258991.7_1_17:62225146-62225452:-|nuORF	REV__ENST00000258991.7_1_17:62225146-62225452:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.31268310546875	2	505.313295	1008.61204	-0.5474	-0.00027661	-3.8131	-0.0019268	-4.3605	-0.0022034	505.31124275930443	83.201	1.2651	80.53	80.185	81.45	-2.6711					81	25	4	0	0	0	0.6962	1	6929	6929		44.117	0.49075	1	541880	+		19249	23914	15712	15735	21327	21327					0.10807531444845608
ILKVHKSLI	9	Unmodified	_ILKVHKSLI_					0	0	0			REV__tr|A0A7D7A1S6|A0A7D7A1S6_9CLOTPLP-dependentaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16740PE=3SV=1	REV__tr|A0A7D7A1S6|A0A7D7A1S6_9CLOTPLP-dependentaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16740PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.8543701171875	2	525.855327	1049.6961	-2.3923	-0.001258	2.3094	0.0012144	-0.082867	-4.3576E-05	525.856409395684	147.69	1.4012	146.25	145.88	147.28	-1.4351					56	27	3	0	0	0	0.40818	1	14554	14554		51.193	3.5354	1	76184	+		19250	32509	15713	15736	21328	21328					0.17324062541752028
ILKVHKSLI	9	Unmodified	_ILKVHKSLI_					0	0	0			REV__tr|A0A7D7A1S6|A0A7D7A1S6_9CLOTPLP-dependentaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16740PE=3SV=1	REV__tr|A0A7D7A1S6|A0A7D7A1S6_9CLOTPLP-dependentaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16740PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	525.855327	1049.6961	-4.282	-0.0022517	4.1552	0.002185	-0.12678	-6.6667E-05	525.8572911526709	147.14	1.1999	146.18	145.79	146.99	-0.95947	-0.035392	0.00095854	NaN	51.193	51	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51162	+		19251	32509	15713	15736							0.17324062541752028
ILKVHKSLINS	11	Unmodified	_ILKVHKSLINS_					0	0	0			REV__tr|A0A7D7A1S6|A0A7D7A1S6_9CLOTPLP-dependentaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16740PE=3SV=1	REV__tr|A0A7D7A1S6|A0A7D7A1S6_9CLOTPLP-dependentaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16740PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	626.3886108398438	2	626.392805	1250.77106	-5.6586	-0.0035445	-3.473	-0.0021755	-9.1316	-0.00572	626.8920656002647	163.54	1.1058	163.31	162.97	164.08	-0.22697					56	36	2	0	0	0	0.72526	1	16699	16699		12.207	0.69566	1	65883	+		19252	32509	15714	15737	21329	21329					0.15570200282331825
ILKVKKPDV	9	Unmodified	_ILKVKKPDV_					0	0	0		tr|A0A553SRY3|A0A553SRY3_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_02040PE=4SV=1	tr|A0A553SRY3|A0A553SRY3_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_02040PE=4SV=1	tr|A0A553SRY3|A0A553SRY3_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_02040PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.795654296875	2	520.347335	1038.68012	0.59305	0.00030859	-3.4988	-0.0018206	-2.9057	-0.001512	520.345528117023	79.86	1.0001	78.164	77.819	78.819	-1.6951					28	19	3	0	0	0	0.027462	1	6733	6733		40.778	16.575	1	31502			19253	34311	15715	15738	21330	21330					0.16232356304840323
ILKWIKIV	8	Unmodified	_ILKWIKIV_					0	0	0			REV__ENST00000480058.5_1_6:4064966-4065116:+|nuORF	REV__ENST00000480058.5_1_6:4064966-4065116:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.7499084472656	2	506.849513	1011.68447	-1.2309	-0.0006239	-1.5526	-0.00078696	-2.7836	-0.0014109	506.8483140996358	76.598	3.7613	74.227	73.67	77.431	-2.3715					144	73	3	0	0	0	0.028476	1	4137	4137		14.664	0	1	107370	+		19254	26450	15716	15739	21331	21331					0.17909865518402057
ILLDHNANI	9	Unmodified	_ILLDHNANI_					0	0	0		nc|ENSG00000183475|Q9H672-2|ASB7;ENSG00000183475|ENST00000332783|ASB7	nc|ENSG00000183475|Q9H672-2|ASB7	nc|ENSG00000183475|Q9H672-2|ASB7	MULTI-MSMS	OvCa99_classI_Rep5	1	511.7845764160156	2	511.785099	1021.55564	2.4601	0.001259	-0.83521	-0.00042745	1.6249	0.00083157	511.7845748098573	94.798	1.9028	94.798	94.475	96.378	0					94	44	4	0	0	0	0.083631	1	10308	10308		101.6	10.824	1	26268000			19255	8076	15717	15740	21332	21332					0.04572858817505221
ILLDIHIFM	9	Unmodified	_ILLDIHIFM_					0	0	0		ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-2|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	ENSG00000175216|ENST00000529230|CKAP5	ENSG00000175216|ENST00000529230|CKAP5	MULTI-MSMS	OvCa99_classI_Rep5	1	557.822265625	2	557.820095	1113.62564	1.3816	0.00077066	0.42425	0.00023665	1.8058	0.0010073	557.82021995191	156.23	2.2146	156.23	155.84	158.05	0					83	43	3	0	0	0	0.14739	1	18307	18307		85.359	23.252	1	227800			19256	7525	15718	15741	21333	21333					0.0733702116178847
ILLDSSAVTL	10	Unmodified	_ILLDSSAVTL_					0	0	0		tr|A0A7D6ZWY2|A0A7D6ZWY2_9CLOTAIM24familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20955PE=4SV=1	tr|A0A7D6ZWY2|A0A7D6ZWY2_9CLOTAIM24familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20955PE=4SV=1	tr|A0A7D6ZWY2|A0A7D6ZWY2_9CLOTAIM24familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20955PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.3024291992188	2	516.30279	1030.59103	1.499	0.00077396	0.44573	0.00023013	1.9448	0.0010041	516.3028622491637	93.724	0.66832	93.724	93.468	94.136	0					30	15	3	0	0	0	0.10773	1	10184	10184		111.65	15.458	1	1048900			19257	35859	15719	15742	21334	21334					0.07695476554658853
ILLDTITMYGA	11	Unmodified	_ILLDTITMYGA_					0	0	0		tr|A0A553SHF9|A0A553SHF9_NIACIStageIIsporulationproteinEOS=NialliacirculansOX=1397GN=spoIIEPE=4SV=1	tr|A0A553SHF9|A0A553SHF9_NIACIStageIIsporulationproteinEOS=NialliacirculansOX=1397GN=spoIIEPE=4SV=1	tr|A0A553SHF9|A0A553SHF9_NIACIStageIIsporulationproteinEOS=NialliacirculansOX=1397GN=spoIIEPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	605.81787109375	2	605.823032	1209.63151	2.1486	0.0013017	0.31673	0.00019188	2.4653	0.0014936	605.8234734534535	90.483	3.1186	90.483	90.186	93.305	0					243	75	4	0	0	0	0.41656	1	9898	9898		34.173	0	1	193210000			19258	33267	15720	15743	21335	21335					0.035080748827795105
ILLEILGILSM	11	Unmodified	_ILLEILGILSM_					0	0	0		tr|A0A7D6ZZE4|A0A7D6ZZE4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19975PE=4SV=1	tr|A0A7D6ZZE4|A0A7D6ZZE4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19975PE=4SV=1	tr|A0A7D6ZZE4|A0A7D6ZZE4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19975PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	607.8030395507812	2	607.875068	1213.73558	-0.028275	-1.7188E-05	-0.79249	-0.00048173	-0.82076	-0.00049892	607.8745341022926	73.092	0.24094	73.092	72.994	73.235	0					10	5	3	0	0	0	0.025239	1	7174	7174		49.442	0	1	149870			19259	35958	15721	15744	21336	21336					0.13726401710300706
ILLENFSAEK	10	Unmodified	_ILLENFSAEK_					0	0	0		ENST00000560979.1_1_15:49715501-49715549:+|nuORF	ENST00000560979.1_1_15:49715501-49715549:+|nuORF	ENST00000560979.1_1_15:49715501-49715549:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	582.3197631835938	2	582.318971	1162.62339	-1.8376	-0.0010701	1.9766	0.001151	0.13897	8.0923E-05	582.319856506265	95.632	1.4164	93.164	92.761	94.177	-2.4685					77	27	4	0	0	0	0.25842	1	8418	8418		85.862	21.655	1	439450			19260	13747	15722	15745	21337	21337					0.04858263957635245
ILLENFSAEK	10	Unmodified	_ILLENFSAEK_					0	0	0		ENST00000560979.1_1_15:49715501-49715549:+|nuORF	ENST00000560979.1_1_15:49715501-49715549:+|nuORF	ENST00000560979.1_1_15:49715501-49715549:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	582.318971	1162.62339	-0.64729	-0.00037693	0.35068	0.00020421	-0.29661	-0.00017272	582.3190625186559	94.304	1.1428	93.204	92.906	94.049	-1.0995	0.035877	-0.0013332	NaN	85.862	74	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	312300			19261	13747	15722	15745							0.04858263957635245
ILLENFSAEK	10	Unmodified	_ILLENFSAEK_					0	0	0		ENST00000560979.1_1_15:49715501-49715549:+|nuORF	ENST00000560979.1_1_15:49715501-49715549:+|nuORF	ENST00000560979.1_1_15:49715501-49715549:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	582.318971	1162.62339	-1.7084	-0.00099484	1.6433	0.00095694	-0.065096	-3.7906E-05	582.3197514756062	95.033	1.3909	93.138	92.813	94.204	-1.8956	-0.030905	0.00017224	NaN	85.862	77	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	563280			19262	13747	15722	15745							0.04858263957635245
ILLFFLGLT	9	Unmodified	_ILLFFLGLT_					0	0	0		chr19:23403747-23404477|345|10.36|0.46|4.5|-|1|TE_info:BSR/Beta,BSR/Beta_dup1763,Satellite,Satellite,donor,+,23404477,23405401|LINC01224,None|4	chr19:23403747-23404477|345|10.36|0.46|4.5|-|1|TE_info:BSR/Beta,BSR/Beta_dup1763,Satellite,Satellite,donor,+,23404477,23405401|LINC01224,None|4	chr19:23403747-23404477|345|10.36|0.46|4.5|-|1|TE_info:BSR/Beta,BSR/Beta_dup1763,Satellite,Satellite,donor,+,23404477,23405401|LINC01224,None|4	MULTI-MSMS	OvCa99_classI_Rep5	1	518.8250732421875	2	518.825704	1035.63685	0.94465	0.00049011	-2.8993	-0.0015042	-1.9546	-0.0010141	518.8241967314773	132.95	1.783	132.95	132.51	134.29	0					72	37	2	0	0	0	0.049137	1	15435	15435		119.22	9.5174	1	2401300			19263	408	15723	15746	21338	21338					0.12046166527557034
ILLFGPRGT	9	Unmodified	_ILLFGPRGT_					0	0	0		ENSG00000182263|ENST00000333129|FIGN	ENSG00000182263|ENST00000333129|FIGN	ENSG00000182263|ENST00000333129|FIGN	MULTI-MSMS	OvCa9_classI_Rep2	2	487.2929992675781	2	487.295102	972.575651	-1.5875	-0.0007736	-2.7606	-0.0013452	-4.3482	-0.0021188	487.2937066188987	143.42	1.0862	143.19	142.8	143.89	-0.22696					37	21	2	0	0	0	0.7044	1	14428	14428		16.473	0.83693	1	43295			19264	7988	15724	15747	21339	21339					0.08826654548136048
ILLFYFNFKRV	11	Unmodified	_ILLFYFNFKRV_					0	0	0			REV__tr|A0A7D6ZYR3|A0A7D6ZYR3_9CLOTTransglutaminasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17350PE=4SV=1	REV__tr|A0A7D6ZYR3|A0A7D6ZYR3_9CLOTTransglutaminasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17350PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.7849426269531	3	487.286857	1458.83874	0.98114	0.0004781	-2.6856	-0.0013087	-1.7045	-0.00083057	487.28605522593097	35.551	1.1991	32.703	32.34	33.539	-2.849					61	23	4	0	0	0	0.026221	1	1162	1162		19.263	5.7547	1	252210	+		19265	32386	15725	15748	21340	21340					0.12767650213095294
ILLGFLYGKL	10	Unmodified	_ILLGFLYGKL_					0	0	0			REV__tr|A0A553SRV2|A0A553SRV2_NIACINa+/H+antiportersubunitEOS=NialliacirculansOX=1397GN=CEQ21_01820PE=3SV=1	REV__tr|A0A553SRV2|A0A553SRV2_NIACINa+/H+antiportersubunitEOS=NialliacirculansOX=1397GN=CEQ21_01820PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	568.8535766601562	2	568.857535	1135.70052	-7.0364	-0.0040027	-0.036741	-2.09E-05	-7.0732	-0.0040236	568.857375140279	161.4	1.8223	160.03	159.69	161.51	-1.3692					107	37	5	0	0	0	0.69986	1	14031	14031		30.504	3.8107	1	827460	+		19266	30768	15726	15749	21341	21341					0.13809526964632823
ILLGIPHTE	9	Unmodified	_ILLGIPHTE_					0	0	0		ENSG00000197309|ENST00000641351|OR10D3	ENSG00000197309|ENST00000641351|OR10D3	ENSG00000197309|ENST00000641351|OR10D3	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.272216796875	2	496.792392	991.570232	1.6711	0.00083018	-0.062794	-3.1196E-05	1.6083	0.00079898	496.79234396649656	81.914	0.40762	81.914	81.654	82.061	0					17	9	2	0	0	0	0.027433	1	8435	8435		23.042	0	1	590620			19267	8698	15727	15750	21342	21342					0.0741093096565919
ILLGLTDDPNF	11	Unmodified	_ILLGLTDDPNF_					0	0	0		ENSG00000205330|ENST00000642104|OR6C1	ENSG00000205330|ENST00000642104|OR6C1	ENSG00000205330|ENST00000642104|OR6C1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	407.529296875	3	406.551928	1216.63395	1.153	0.00046876	0.79522	0.0003233	1.9482	0.00079206	406.5515146076713	20.89	0.5026	19.551	19.362	19.864	-1.3386					23	10	3	0	0	0	0.026056	1	136	136		18.531	1.8137	1	17519			19268	9067	15728	15751	21343	21343					0.03430246612083465
ILLGMFFV	8	Unmodified	_ILLGMFFV_					0	0	0		ENSG00000158748|ENST00000289753|HTR6	ENSG00000158748|ENST00000289753|HTR6	ENSG00000158748|ENST00000289753|HTR6	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.2720947265625	2	470.27225	938.529947	-0.8118	-0.00038177	0.57715	0.00027142	-0.23466	-0.00011035	470.2724357477648	146.54	1.4309	145.1	144.49	145.92	-1.4357					59	27	4	0	0	0	0.7543	1	14406	14406		24.504	2.5441	1	187810			19269	5971	15729	15752	21344	21344					0.05822293041535431
ILLHLESEL	9	Unmodified	_ILLHLESEL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000402024.2_1_6:116778703-116778877:-|nuORF;ENST00000452408.1_1_6:28937132-28937360:-|nuORF;ENST00000395181.2_1_2:190176192-190176438:-|nuORF;ENST00000506277.1_1_5:36886275-36886596:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa99_classI_Rep5	1	533.8118896484375	2	533.810782	1065.60701	1.9286	0.0010295	0.19053	0.00010171	2.1191	0.0011312	533.8107229688325	112.69	0.99043	112.69	112.39	113.38	0					47	21	3	0	0	0	0.027416	1	12835	12835		138.24	18.685	1	642430			19270	2808	15730	15753	21345	21345					0.07683182791583931
ILLHLESEL	9	Unmodified	_ILLHLESEL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000402024.2_1_6:116778703-116778877:-|nuORF;ENST00000452408.1_1_6:28937132-28937360:-|nuORF;ENST00000395181.2_1_2:190176192-190176438:-|nuORF;ENST00000506277.1_1_5:36886275-36886596:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa9_classI_Rep2	2	533.8099975585938	2	533.810782	1065.60701	-0.41034	-0.00021904	0.17338	9.2554E-05	-0.23696	-0.00012649	533.8107432944282	113.1	1.7279	112.98	112.67	114.4	-0.12174					88	34	4	0	0	0	0.11171	1	10746	10746		94.006	17.16	1	138910			19271	2808	15730	15753	21346	21346					0.07683182791583931
ILLHLESEL	9	Unmodified	_ILLHLESEL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000402024.2_1_6:116778703-116778877:-|nuORF;ENST00000452408.1_1_6:28937132-28937360:-|nuORF;ENST00000395181.2_1_2:190176192-190176438:-|nuORF;ENST00000506277.1_1_5:36886275-36886596:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa9_classI_Rep3	3	533.8107299804688	2	533.810782	1065.60701	0.87011	0.00046448	-1.0135	-0.00054102	-0.14339	-7.6541E-05	533.810113388829	114.03	2.0545	112.97	112.63	114.69	-1.055					91	40	3	0	0	0	0.21395	3	8414	8414;8418;8426		73.975	12.866	1	264940			19272	2808	15730	15753	21347;21348;21349	21347					0.07683182791583931
ILLHLESEL	9	Unmodified	_ILLHLESEL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF;ENST00000402024.2_1_6:116778703-116778877:-|nuORF;ENST00000452408.1_1_6:28937132-28937360:-|nuORF;ENST00000395181.2_1_2:190176192-190176438:-|nuORF;ENST00000506277.1_1_5:36886275-36886596:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.8109741210938	2	533.810782	1065.60701	-0.37036	-0.0001977	0.090578	4.8352E-05	-0.27978	-0.00014935	533.8107068230561	114.36	1.887	112.96	112.63	114.51	-1.3977					88	36	3	0	0	0	0.071436	1	10624	10624		106.42	8.9425	1	280680			19273	2808	15730	15753	21350	21350					0.07683182791583931
ILLIAKVIP	9	Unmodified	_ILLIAKVIP_					0	0	0		tr|A0A553SM07|A0A553SM07_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_21630PE=4SV=1	tr|A0A553SM07|A0A553SM07_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_21630PE=4SV=1	tr|A0A553SM07|A0A553SM07_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_21630PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	490.33673095703125	2	490.349346	978.684139	-1.4718	-0.0007217	-0.62999	-0.00030891	-2.1018	-0.0010306	490.3489079918595	136.57	0.44217	135.47	135.34	135.78	-1.1076					14	8	3	0	0	0	0.027462	1	11126	11126		52.299	7.7681	1	53814			19274	33780	15731	15754	21351	21351					0.19394445798559445
ILLIGQPAE	9	Unmodified	_ILLIGQPAE_					0	0	0		ENSG00000180043|ENST00000424985|GARIN5B	ENSG00000180043|ENST00000424985|GARIN5B	ENSG00000180043|ENST00000424985|GARIN5B	MULTI-MSMS	OvCa99_classI_Rep5	1	477.2883605957031	2	477.286943	952.559333	2.0114	0.00096003	0.24551	0.00011718	2.2569	0.0010772	477.2869831243387	134.32	0.93381	134.32	134.06	134.99	0					34	20	3	0	0	0	0.079296	1	15627	15627		102.77	5.3007	1	655720			19275	7853	15732	15755	21352	21352					0.08115528591372367
ILLITTLHI	9	Unmodified	_ILLITTLHI_					0	0	0		L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|83|2|sense	L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|83|2|sense	L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|83|2|sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.3246459960938	2	518.841885	1035.66922	1.001	0.00051935	4.1158	0.0021355	5.1168	0.0026548	518.8438011447012	69.413	0.19907	66.598	66.512	66.711	-2.8144					5	3	2	0	0	0	0.027462	1	3089	3089		21.702	12.88	1	14319			19276	14660	15733	15756	21353	21353					0.1528095393057356
ILLIWLKL	8	Unmodified	_ILLIWLKL_					0	0	0			REV__tr|A0A7D6VR63|A0A7D6VR63_9CLOTGlucanaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00260PE=3SV=1	REV__tr|A0A7D6VR63|A0A7D6VR63_9CLOTGlucanaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00260PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.33111572265625	2	506.351889	1010.68922	-1.0479	-0.00053061	-3.3678	-0.0017053	-4.4157	-0.0022359	506.3499792671507	56.965	0.89165	54.173	53.881	54.773	-2.7921					31	17	3	0	0	0	0.028476	1	4021	4021		8.8223	0	1	37222	+		19277	31391	15734	15757	21354	21354					0.18430749661183654
ILLIWLKL	8	Unmodified	_ILLIWLKL_					0	0	0			REV__tr|A0A7D6VR63|A0A7D6VR63_9CLOTGlucanaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00260PE=3SV=1	REV__tr|A0A7D6VR63|A0A7D6VR63_9CLOTGlucanaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00260PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	506.351889	1010.68922	-0.39655	-0.0002008	-4.0252	-0.0020382	-4.4217	-0.002239	506.3497778195436	57.865	0.85848	54.52	54.24	55.098	-3.3449	0.17379	-0.00038346	NaN	8.8223	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38654	+		19278	31391	15734	15757							0.18430749661183654
ILLIYVLAM	9	Unmodified	_ILLIYVLAM_					0	0	0			REV__ENST00000305963.2_1_X:135046992-135047052:-|nuORF	REV__ENST00000305963.2_1_X:135046992-135047052:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	524.8270874023438	2	524.827389	1047.64023	-4.3889	-0.0023034	3.8784	0.0020355	-0.51049	-0.00026792	524.8292785030237	156.45	1.4045	156.23	155.89	157.3	-0.22696					98	36	4	0	0	0	0.68641	2	15902	15893;15902		21.702	3.3779	1	556080	+		19279	24289	15735	15758	21355;21356	21356					0.11831093309933749
ILLIYYQSA	9	Unmodified	_ILLIYYQSA_					0	0	0			REV__ENSG00000178773|ENST00000319518|CPNE7	REV__ENSG00000178773|ENST00000319518|CPNE7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.2903442382812	2	542.307875	1082.6012	-0.80428	-0.00043617	0.97616	0.00052938	0.17188	9.3212E-05	542.3080724459586	62.568	0.83305	59.111	58.475	59.309	-3.4577					38	16	3	0	0	0	0.027433	1	4337	4337		71.296	14.575	1	136900	+		19280	22079	15736	15759	21357	21357					0.06320084279923321
ILLIYYQSA	9	Unmodified	_ILLIYYQSA_					0	0	0			REV__ENSG00000178773|ENST00000319518|CPNE7	REV__ENSG00000178773|ENST00000319518|CPNE7	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.307875	1082.6012	-1.8264	-0.0009905	1.9922	0.0010804	0.16578	8.9902E-05	542.308696439448	61.615	0.98997	58.856	58.147	59.137	-2.7593	-0.12752	0.00060531	NaN	71.296	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125740	+		19281	22079	15736	15759							0.06320084279923321
ILLKAQIKT	9	Unmodified	_ILLKAQIKT_					0	0	0		tr|A0A7D7A374|A0A7D7A374_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22615PE=4SV=1	tr|A0A7D7A374|A0A7D7A374_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22615PE=4SV=1	tr|A0A7D7A374|A0A7D7A374_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22615PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.280517578125	2	514.347335	1026.68012	-0.43705	-0.0002248	0.36087	0.00018561	-0.076182	-3.9184E-05	514.347259931502	73.339	0.52322	73.339	73.113	73.636	0					22	12	3	0	0	0	0.027462	1	7229	7229		25.45	0	1	921180			19282	36106	15737	15760	21358	21358					0.16784356304856374
ILLKDILSV	9	Unmodified	_ILLKDILSV_					0	0	0		ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	OvCa99_classI_Rep5	1	507.3353271484375	2	507.333893	1012.65323	0.99244	0.0005035	0.95311	0.00048355	1.9456	0.00098705	507.3343006323934	132.45	2.2969	132.45	132.09	134.38	0					104	48	4	0	0	0	0.033166	4	15398	15376;15398;15423;15441		132.76	17.142	1	4040500			19283	5455	15738	15761	21359;21360;21361;21362	21360					0.14741247693666537
ILLKPVKGPKQ	11	Unmodified	_ILLKPVKGPKQ_					0	0	0			REV__nc|ENSG00000244575|A0A075B6S5|IGKV1-27	REV__nc|ENSG00000244575|A0A075B6S5|IGKV1-27	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.58642578125	3	407.607819	1219.80163	0.47003	0.00019159	4.2966	0.0017513	4.7667	0.0019429	407.61046040649813	33.967	0.19241	33.967	33.873	34.065	0					5	3	2	0	0	0	0.025864	1	1591	1591		28.577	10.315	1	7283.8	+		19284	29163	15739	15762	21363	21363					0.20051978667356707
ILLKVHEPN	9	Unmodified	_ILLKVHEPN_					0	0	0			REV__nc|ENSG00000119509|Q9Y283-2|INVS	REV__nc|ENSG00000119509|Q9Y283-2|INVS	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8170166015625	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.56889	1	13958	13958		35.618	0	1	166960	+		19285	18446	15740	15763	21364	21364					0.09498308748334239
ILLLALEA	8	Unmodified	_ILLLALEA_					0	0	0			REV__ENST00000546525.5_1_6:170034618-170062491:-|nuORF	REV__ENST00000546525.5_1_6:170034618-170062491:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	428.2697448730469	2	428.281129	854.547705	0.63823	0.00027334	-1.723	-0.00073791	-1.0847	-0.00046457	428.2810442544437	57.101	0.50901	53.756	53.577	54.086	-3.3449					11	9	2	0	0	0	0.028476	1	3677	3677		14.664	0	1	17707	+		19286	27425	15741	15764	21365	21365					0.11461331568034439
ILLLAPVKKP	10	Unmodified	_ILLLAPVKKP_					0	0	0			REV__chr1:121538420-121539658|311|22.96|0.14|7.31|+|0|TE_info:MER92A,MER92A_dup4,ERV1,LTR,acceptor,+,121539658,121539920|EMBP1,None|2	REV__chr1:121538420-121539658|311|22.96|0.14|7.31|+|0|TE_info:MER92A,MER92A_dup4,ERV1,LTR,acceptor,+,121539658,121539920|EMBP1,None|2	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.3095703125	2	546.381177	1090.7478	-0.2094	-0.00011441	1.8472	0.0010092	1.6378	0.00089484	546.3823522243003	51.187	0.17084	51.187	51.078	51.248	0					6	3	2	0	0	0	0.027433	1	3934	3934		7.1934	0.8807	1	73740	+		19287	15796	15742	15765	21366	21366					0.2060580623565329
ILLLFIYDK	9	Unmodified	_ILLLFIYDK_					0	0	0			REV__ENSG00000162763|ENST00000294818|LRRC52	REV__ENSG00000162763|ENST00000294818|LRRC52	MULTI-MSMS	OvCa99_classI_Rep5	1	569.3512573242188	2	569.349543	1136.68453	0.89854	0.00051158	1.2671	0.0007214	2.1656	0.001233	569.3500902479316	142.06	1.8785	142.06	141.69	143.56	0					84	37	4	0	0	0	0.064607	1	16604	16604		110.34	8.7365	1	928870	+		19288	20777	15743	15766	21367	21367					0.12165820727750543
ILLLHNEPL	9	Unmodified	_ILLLHNEPL_					0	0	0			REV__ENSG00000186088|ENST00000257626|GSAP	REV__ENSG00000186088|ENST00000257626|GSAP	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.3031005859375	2	531.321317	1060.62808	0.47819	0.00025407	-0.33332	-0.0001771	0.14488	7.6975E-05	531.3208798228695	119.03	0.94263	118	117.58	118.53	-1.0271					47	18	4	0	0	0	0.027456	1	9032	9032		30.504	0	1	113340	+		19289	22554	15744	15767	21368	21368					0.10019192891104467
ILLLKYSR	8	Unmodified	_ILLLKYSR_					0	0	0			REV__tr|A0A7D6VQ84|A0A7D6VQ84_9CLOTAryl-sulfatesulfotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19800PE=4SV=1	REV__tr|A0A7D6VQ84|A0A7D6VQ84_9CLOTAryl-sulfatesulfotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19800PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.3260803222656	2	503.326402	1004.63825	0.16092	8.0995E-05	-0.74874	-0.00037686	-0.58781	-0.00029586	503.3259504864153	114.09	2.4187	112.65	112.2	114.61	-1.4461					133	47	5	0	0	0	0.62934	1	10668	10668		57.811	5.5121	1	1182900	+		19290	31304	15745	15768	21369	21369					0.13611800616320124
ILLLLSDLE	9	Unmodified	_ILLLLSDLE_					0	0	0		chr11:112091514-112094805|101|16.19|0.97|4.06|+|0|TE_info:L2a,L2a_dup117213,L2,LINE,donor,+,112091161,112091514|None,SDHD|2	chr11:112091514-112094805|101|16.19|0.97|4.06|+|0|TE_info:L2a,L2a_dup117213,L2,LINE,donor,+,112091161,112091514|None,SDHD|2	chr11:112091514-112094805|101|16.19|0.97|4.06|+|0|TE_info:L2a,L2a_dup117213,L2,LINE,donor,+,112091161,112091514|None,SDHD|2	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.757568359375	2	514.815533	1027.61651	1.5645	0.00080544	0.64492	0.00033202	2.2095	0.0011375	514.8155688605334	127.34	0.30784	126.27	126.07	126.38	-1.0715					8	5	2	0	0	0	0.027462	1	9962	9962		24.203	1.1603	1	15007			19291	282	15746	15769	21370	21370					0.10380951077104328
ILLLMYRMKKK	11	Unmodified	_ILLLMYRMKKK_					0	0	0		ENSG00000124145|ENST00000372733|SDC4	ENSG00000124145|ENST00000372733|SDC4	ENSG00000124145|ENST00000372733|SDC4	MULTI-MSMS	OvCa99_classI_Rep5	1	479.63226318359375	3	479.632983	1435.87712	-0.20282	-9.7278E-05	-1.9463	-0.00093352	-2.1491	-0.0010308	479.6320653010283	29.762	1.3942	29.762	29.337	30.731	0					81	27	5	0	0	0	0.72507	1	1069	1069		14.694	4.5898	1	598080			19292	3627	15747	15770	21371	21371					0.1766149653174125
ILLLRQSL	8	Unmodified	_ILLLRQSL_					0	0	0			REV__ENST00000425141.5_1_2:220498093-220506447:+|nuORF	REV__ENST00000425141.5_1_2:220498093-220506447:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.2974548339844	2	478.318577	954.622602	-0.67518	-0.00032295	0.39584	0.00018934	-0.27934	-0.00013361	478.3187392845066	115.31	1.4828	115.19	114.65	116.13	-0.11777					64	29	3	0	0	0	0.028476	1	10991	10991		52.299	0	1	109780	+		19293	18209	15748	15771	21372	21372					0.14347514099279124
ILLLTPFSEE	10	Unmodified	_ILLLTPFSEE_					0	0	0			REV__ENSG00000184445|ENST00000333479|KNTC1	REV__ENSG00000184445|ENST00000333479|KNTC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	580.7529296875	2	581.323722	1160.63289	-1.1676	-0.00067874	-2.476	-0.0014393	-3.6436	-0.0021181	581.8245886774009	94.949	0.7015	92.481	91.96	92.661	-2.4685					17	13	2	0	0	0	0.027088	1	8352	8352		34.173	0	1	30372	+		19294	22428	15749	15772	21373	21373					0.05900032243198439
ILLNFFCP	8	Unmodified	_ILLNFFCP_					0	0	0			REV__ENSG00000268964|ENST00000601417|ERVV-2	REV__ENSG00000268964|ENST00000601417|ERVV-2	MULTI-MSMS	OvCa9_classI_Rep3	3	483.75726318359375	2	483.759507	965.50446	-0.55004	-0.00026609	-2.5971	-0.0012564	-3.1471	-0.0015224	483.7581117979979	133.25	1.079	132.13	131.88	132.96	-1.1249					46	21	3	0	0	0	0.69415	1	10716	10716		44.531	0	1	117690	+		19295	23598	15750	15773	21374	21374					0.020328185191146986
ILLPIILDGGK	11	Unmodified	_ILLPIILDGGK_					0	0	0		tr|A0A7D7AEZ8|A0A7D7AEZ8_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04120PE=3SV=1	tr|A0A7D7AEZ8|A0A7D7AEZ8_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04120PE=3SV=1	tr|A0A7D7AEZ8|A0A7D7AEZ8_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04120PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.793701171875	2	576.373549	1150.73255	1.3317	0.00076754	-2.5565	-0.0014735	-1.2248	-0.00070596	576.3726382579514	127.3	0.57715	127.3	127.1	127.67	0					24	12	4	0	0	0	0.026007	1	14710	14710		12.812	0	1	461140			19296	36249	15751	15774	21375	21375					0.16320894647810746
ILLPIRVLL	9	Unmodified	_ILLPIRVLL_					0	0	0		ENSG00000087253|ENST00000262134|LPCAT2;ENST00000566911.1_1_16:55543042-55559560:+|nuORF	ENSG00000087253|ENST00000262134|LPCAT2	ENSG00000087253|ENST00000262134|LPCAT2	MULTI-MSMS	OvCa99_classI_Rep5	1	525.3771362304688	2	525.375895	1048.73724	0.91206	0.00047917	-1.0421	-0.00054748	-0.13001	-6.8304E-05	525.3752295269967	150.06	1.8583	150.06	149.75	151.6	0					81	36	4	0	0	0	0.043206	2	17569	17546;17569		123.99	22.777	1	785340			19297	1768	15752	15775	21376;21377	21377					0.21481823581234494
ILLPPLFM	8	Unmodified	_ILLPPLFM_					0	0	0			REV__nc|ENSG00000112494|Q86WB7-2|UNC93A	REV__nc|ENSG00000112494|Q86WB7-2|UNC93A	MULTI-MSMS	OvCa9_classI_Rep2	2	472.2874450683594	2	472.2879	942.561247	-3.3723	-0.0015927	3.1615	0.0014932	-0.21071	-9.9516E-05	472.2892568382278	150.85	1.4757	150.62	150.22	151.7	-0.22697					85	29	4	0	0	0	0.7543	1	15329	15329		24.504	6.1796	1	396600	+		19298	18104	15753	15776	21378	21378					0.0876686607564352
ILLPRISPE	9	Unmodified	_ILLPRISPE_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11;ENST00000558989.1_1_15:44913939-44914014:-|nuORF;RBFA-SPG11|2|fusion;RBFA-SPG11|1|fusion	nc|ENSG00000104133|Q96JI7-3|SPG11;RBFA-SPG11|2|fusion	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.7797241210938	2	519.321317	1036.62808	1.1862	0.00061601	-1.29	-0.00066993	-0.10382	-5.3918E-05	519.3203007684344	113.49	0.76674	112.41	112.05	112.82	-1.0753					38	14	4	0	0	0	0.027462	1	8321	8321		35.618	18.253	1	212790			19299	2354;15543	15754	15777	21379	21379					0.11123192891091094
ILLPYVSKV	9	Unmodified	_ILLPYVSKV_					0	0	0		ENST00000515876.5_1_4:941527-949679:+|nuORF;ENST00000452360.6_1_4:942397-950358:+|nuORF;nc|ENSG00000127419|Q9BSA9-2|TMEM175;ENSG00000127419|ENST00000264771|TMEM175;ENST00000506669.1_1_4:946199-949276:+|nuORF;TMEM175|p.F250Gfs*48|1|0.13|ENSG00000127419|chr4:955795-955796|-/GGGTTCCACCCAGGGTC|frameshift_variant	ENST00000515876.5_1_4:941527-949679:+|nuORF	ENST00000515876.5_1_4:941527-949679:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.7623291015625	2	516.328611	1030.64267	1.4696	0.00075879	0.46805	0.00024167	1.9376	0.0010005	516.3287258839943	111	0.97951	111	110.63	111.6	0					55	21	4	0	0	0	0.02744	1	12616	12616		71.877	5.4482	1	1182200			19300	3831	15755	15778	21380	21380					0.1285726503922433
ILLPYVSKV	9	Unmodified	_ILLPYVSKV_					0	0	0		ENST00000515876.5_1_4:941527-949679:+|nuORF;ENST00000452360.6_1_4:942397-950358:+|nuORF;nc|ENSG00000127419|Q9BSA9-2|TMEM175;ENSG00000127419|ENST00000264771|TMEM175;ENST00000506669.1_1_4:946199-949276:+|nuORF;TMEM175|p.F250Gfs*48|1|0.13|ENSG00000127419|chr4:955795-955796|-/GGGTTCCACCCAGGGTC|frameshift_variant	ENST00000515876.5_1_4:941527-949679:+|nuORF	ENST00000515876.5_1_4:941527-949679:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	516.3267822265625	2	516.328611	1030.64267	0.28377	0.00014652	-0.48471	-0.00025027	-0.20094	-0.00010375	516.328221325603	110.45	1.3825	110.28	109.91	111.29	-0.17237					66	27	4	0	0	0	0.053172	2	10405	10399;10405		116.9	34.663	1	199670			19301	3831	15755	15778	21381;21382	21382					0.1285726503922433
ILLPYVSKV	9	Unmodified	_ILLPYVSKV_					0	0	0		ENST00000515876.5_1_4:941527-949679:+|nuORF;ENST00000452360.6_1_4:942397-950358:+|nuORF;nc|ENSG00000127419|Q9BSA9-2|TMEM175;ENSG00000127419|ENST00000264771|TMEM175;ENST00000506669.1_1_4:946199-949276:+|nuORF;TMEM175|p.F250Gfs*48|1|0.13|ENSG00000127419|chr4:955795-955796|-/GGGTTCCACCCAGGGTC|frameshift_variant	ENST00000515876.5_1_4:941527-949679:+|nuORF	ENST00000515876.5_1_4:941527-949679:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.3262329101562	2	516.328611	1030.64267	0.12412	6.4089E-05	-0.4323	-0.00022321	-0.30818	-0.00015912	516.3282703381798	111.83	1.4945	110.32	109.95	111.44	-1.5111					68	28	4	0	0	0	0.11471	2	10306	10306;10319		93.195	18.94	1	208720			19302	3831	15755	15778	21383;21384	21383					0.1285726503922433
ILLQGRLYL	9	Unmodified	_ILLQGRLYL_					0	0	0		nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000023171|Q3KR37|GRAMD1B;nc|ENSG00000023171|Q3KR37-4|GRAMD1B;ENST00000532581.5_1_11:123431173-123490076:+|nuORF;ENSG00000023171|ENST00000635736|GRAMD1B;ENST00000486457.5_1_3:113557756-113601627:+|nuORF;GRAMD1A-FXYD3|5|fusion;GRAMD1A-FXYD3|2|fusion;GRAMD1A-FXYD3|6|fusion;GRAMD1A-FXYD3|3|fusion;GRAMD1A-FXYD3|4|fusion;GRAMD1A-FXYD3|1|fusion;ENSG00000178075|ENST00000358160|GRAMD1C;nc|ENSG00000089351|Q96CP6-2|GRAMD1A;nc|ENSG00000089351|Q96CP6-3|GRAMD1A;ENSG00000089351|ENST00000317991|GRAMD1A	nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000089351|Q96CP6-2|GRAMD1A	nc|ENSG00000023171|Q3KR37-2|GRAMD1B	MULTI-MSMS	OvCa99_classI_Rep5	1	544.8461303710938	2	544.844959	1087.67537	2.2231	0.0012113	-0.25976	-0.00014153	1.9633	0.0010697	544.8447449561304	115.56	1.3856	115.56	115.16	116.55	0					95	29	5	0	0	0	0.071436	1	13213	13213		106.42	3.6419	1	2188400			19303	1035;1822	15756	15779	21385	21385					0.1350347216209684
ILLQLPALPDI	11	Unmodified	_ILLQLPALPDI_					0	0	0			REV__nc|ENSG821|P63135|ERVK-7_pol;REV__nc|ENSG851|Q9QC07|ERVK-18_pol	REV__nc|ENSG821|P63135|ERVK-7_pol	MULTI-MSMS	OvCa9_classI_Rep3	3	402.58758544921875	3	402.588313	1204.74311	1.9558	0.00078737	-4.1009	-0.001651	-2.1452	-0.00086362	402.5866179428177	67.03	2.5083	64.142	63.83	66.339	-2.8873					141	49	4	0	0	0	0.71582	1	2863	2863		24.232	0.70912	1	637180	+		19304	29230;29235	15757	15780	21386	21386					0.1489287730223623
ILLQPTSSI	9	Unmodified	_ILLQPTSSI_					0	0	0		ENSG00000197816|ENST00000529487|CCDC180;nc|ENSG00000197816|Q9P1Z9|CCDC180;ENST00000375206.6_1_9:100053158-100139173:+|nuORF;nc|ENSG00000197816|Q9P1Z9-3|CCDC180;ENST00000487976.2_1_9:100136781-100139173:+|nuORF;ENST00000526038.1_1_9:100136781-100138195:+|nuORF	ENSG00000197816|ENST00000529487|CCDC180	ENSG00000197816|ENST00000529487|CCDC180	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.2913818359375	2	486.292225	970.569897	3.3464	0.0016273	-3.7995	-0.0018477	-0.45304	-0.00022031	486.29031472683596	133.8	3.4888	132.27	131.95	135.44	-1.5257					167	70	3	0	0	0	0.35444	1	13010	13010		56.721	1.2168	1	1397500			19305	8751	15758	15781	21387	21387					0.08343511245811897
ILLRAVPAIDS	11	Unmodified	_ILLRAVPAIDS_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000024146;REV__ENSG00000175899|ENST00000318602|A2M	REV__ENSG00000175899|ENST00000318602|A2M	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3572998046875	2	584.358431	1166.70231	-0.5033	-0.0002941	-2.654	-0.0015509	-3.1573	-0.001845	584.3567763295431	142.42	4.015	140.98	138.81	142.83	-1.4427					242	77	4	0	0	0	0.68684	1	13861	13861		34.173	1.3601	1	214670	+	+	19306	21922;16174	15759	15782	21388	21388					0.1256253598260173
ILLRIYSF	8	Unmodified	_ILLRIYSF_					0	0	0			REV__tr|A0A553SKS9|A0A553SKS9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_19205PE=4SV=1	REV__tr|A0A553SKS9|A0A553SKS9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_19205PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	512.2581176757812	2	512.813128	1023.6117	-0.84694	-0.00043432	-3.1425	-0.0016115	-3.9894	-0.0020458	512.8113117265927	55.951	1.4854	53.147	52.631	54.117	-2.804					67	29	3	0	0	0	0.028476	1	3951	3951		25.45	11.675	1	224850	+		19307	30149	15760	15783	21389	21389					0.10084111724984268
ILLRQRHRIML	11	Unmodified	_ILLRQRHRIML_					0	0	0		ENST00000548924.5_1_12:70901743-70904223:+|nuORF;ENST00000549616.5_1_12:70901743-70914019:+|nuORF	ENST00000548924.5_1_12:70901743-70904223:+|nuORF	ENST00000548924.5_1_12:70901743-70904223:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.74456787109375	3	483.638007	1447.89219	-4.8227	-0.0023324	-2.2287	-0.0010779	-7.0514	-0.0034103	483.63691933615036	155.72	0.56398	154.23	153.97	154.54	-1.4911					21	15	2	0	0	0	0.026478	1	15402	15402		3.6191	2.2003	1	14039			19308	13565	15761	15784	21390	21390					0.1861612444399725
ILLRTILEI	9	Unmodified	_ILLRTILEI_					0	0	0		DOCK4|p.F1456Lfs*4|1|0.11|ENSG00000128512|chr7:111755521-111755536|ACGCTTTTCCACTTCA/-|frameshift_variant;nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4	DOCK4|p.F1456Lfs*4|1|0.11|ENSG00000128512|chr7:111755521-111755536|ACGCTTTTCCACTTCA/-|frameshift_variant;nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MSMS	OvCa99_classI_Rep5	1	542.3618774414062	2	542.360442	1082.70633	1.6867	0.00091478	0.45732	0.00024803	2.144	0.0011628	542.3605704831067	135.57	2.7587	135.57	135.17	137.93	0					119	58	4	0	0	0	0.0094273	3	15803	15779;15803;15828		171.53	41.849	1	2035700			19309	3882;758	15762	15785	21391;21392;21393	21392					0.16828625476341585
ILLSLLYAK	9	Unmodified	_ILLSLLYAK_					0	0	0			REV__ENST00000447266.6_1_6:76376439-76376544:+|nuORF	REV__ENST00000447266.6_1_6:76376439-76376544:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.3232421875	2	517.336436	1032.65832	-0.41355	-0.00021394	2.9837	0.0015436	2.5701	0.0013296	517.3382341094318	105.34	0.29767	103.32	103.2	103.5	-2.0161					7	5	2	0	0	0	0.027462	1	9560	9560		21.96	1.013	1	46685	+		19310	25913	15763	15786	21394	21394					0.1432955155628406
ILLTIVSN	8	Unmodified	_ILLTIVSN_					0	0	0			REV__tr|A0A553SSZ6|A0A553SSZ6_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_04125PE=4SV=1	REV__tr|A0A553SSZ6|A0A553SSZ6_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_04125PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	436.7737731933594	2	436.776211	871.537869	-2.6718	-0.001167	-0.40157	-0.0001754	-3.0734	-0.0013424	436.7759504548302	144.44	1.6886	143.47	143.1	144.79	-0.97299					107	33	5	0	0	0	0.74971	1	12053	12053		26.796	0	1	989010	+		19311	30899	15764	15787	21395	21395					0.09696143562666748
ILLTLCYADC	10	Unmodified	_ILLTLCYADC_					0	0	0		tr|A0A553SP81|A0A553SP81_NIACIPurinenucleosidephosphorylaseOS=NialliacirculansOX=1397GN=pgeFPE=3SV=1	tr|A0A553SP81|A0A553SP81_NIACIPurinenucleosidephosphorylaseOS=NialliacirculansOX=1397GN=pgeFPE=3SV=1	tr|A0A553SP81|A0A553SP81_NIACIPurinenucleosidephosphorylaseOS=NialliacirculansOX=1397GN=pgeFPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.8093872070312	2	564.277403	1126.54025	1.4158	0.0007989	-1.1836	-0.00066788	0.2322	0.00013102	564.2765378895044	150.7	0.9574	150.7	150.39	151.35	0					34	18	2	0	0	0	0.026523	1	17629	17629		58.782	0.97068	1	97577			19312	34013	15765	15788	21396	21396					-0.01795512086209783
ILLTLGLSAM	10	Unmodified	_ILLTLGLSAM_					0	0	0			REV__ENSG00000186815|ENST00000335509|TPCN1	REV__ENSG00000186815|ENST00000335509|TPCN1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.31494140625	2	516.312103	1030.60965	0.22946	0.00011847	3.5411	0.0018283	3.7706	0.0019468	516.3138686677379	161.44	1.3688	161.44	161.11	162.48	0					57	26	4	0	0	0	0.71192	1	18912	18912		29.15	1.2673	1	928880	+		19313	22613	15766	15789	21397	21397					0.09557314924882121
ILLTTYEI	8	Unmodified	_ILLTTYEI_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1;CHD1|p.D670Vfs*3|1|0.07|ENSG00000153922|chr5:98892696-98892697|-/A|frameshift_variant	nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000153922|O14646-2|CHD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.2701416015625	2	483.281326	964.548099	-3.2777	-0.0015841	-2.9676	-0.0014342	-6.2453	-0.0030182	483.2799479167691	151.49	0.72433	150.06	149.77	150.5	-1.4344					24	15	2	0	0	0	0.028476	1	14972	14972		19.36	4.6959	1	31024			19314	5701	15767	15790	21398	21398					0.06440706497232895
ILLTTYEI	8	Unmodified	_ILLTTYEI_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1;CHD1|p.D670Vfs*3|1|0.07|ENSG00000153922|chr5:98892696-98892697|-/A|frameshift_variant	nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000153922|O14646-2|CHD1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	483.281326	964.548099	-4.7971	-0.0023184	-1.6166	-0.00078129	-6.4138	-0.0030997	483.28042616640664	151.01	0.59763	150.05	149.86	150.45	-0.95647	-0.0026997	0.00079348	NaN	19.36	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17552			19315	5701	15767	15790							0.06440706497232895
ILLVCDDINAM	11	Oxidation (M)	_ILLVCDDINAM(Oxidation (M))_		ILLVCDDINAM(1)		ILLVCDDINAM(41)	0	0	1			REV__ENST00000358465.6_1_1:114939922-114939988:-|nuORF	REV__ENST00000358465.6_1_1:114939922-114939988:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	618.3040161132812	2	618.304149	1234.59375	0.10828	6.6952E-05	-0.076197	-4.7113E-05	0.032087	1.9839E-05	618.3038542312992	135.93	1.083	134.82	134.55	135.64	-1.1076					37	21	3	0	0	0	0.63561	1	11016	11016		41.427	7.2541	1	71709	+		19316	24798	15768	15791	21399	21399		562			-0.014167593743650286
ILLVHNVLSA	10	Unmodified	_ILLVHNVLSA_					0	0	0			REV__ENSG00000186871|ENST00000334463|ERCC6L	REV__ENSG00000186871|ENST00000334463|ERCC6L	MULTI-MSMS	OvCa9_classI_Rep4_	4	539.831787109375	2	539.834591	1077.65463	-3.4548	-0.001865	-0.69323	-0.00037423	-4.148	-0.0022393	539.8341906594819	150.18	1.502	148.75	148.37	149.88	-1.4344					84	33	4	0	0	0	0.64063	1	14853	14853		37.159	1.5408	1	222660	+		19317	22617	15769	15792	21400	21400					0.11890881782437646
ILLVWRMV	8	Unmodified	_ILLVWRMV_					0	0	0		nc|ENSG00000138835|P49796-4|RGS3;ENSG00000138835|ENST00000695401|RGS3;nc|ENSG00000138835|P49796-6|RGS3;nc|ENSG00000138835|P49796|RGS3;nc|ENSG00000138835|P49796-9|RGS3;nc|ENSG00000138835|P49796-5|RGS3;RGS3|p.A828Dfs*5|1|0.04|ENSG00000138835|chr9:113583893-113583894|-/GACA|frameshift_variant	nc|ENSG00000138835|P49796-4|RGS3	nc|ENSG00000138835|P49796-4|RGS3	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.755615234375	2	515.317523	1028.62049	1.0584	0.00054541	1.8708	0.00096407	2.9292	0.0015095	515.318693748546	109.46	0.88415	109.46	108.93	109.81	0					40	19	3	0	0	0	0.028476	1	12354	12354		49.211	18.707	1	429010			19318	4738	15770	15793	21401	21401					0.10732762089833159
ILLWGISHIL	10	Unmodified	_ILLWGISHIL_					0	0	0			REV__tr|A0A7D6W1X0|A0A7D6W1X0_9CLOTYccFdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04695PE=4SV=1	REV__tr|A0A7D6W1X0|A0A7D6W1X0_9CLOTYccFdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04695PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.3255615234375	2	582.860609	1163.70667	0.79807	0.00046516	-1.7162	-0.0010003	-0.91817	-0.00053516	583.3610606895361	155.72	0.61356	155.72	155.43	156.04	0					15	11	2	0	0	0	0.027056	1	18250	18250		35.618	11.416	1	32568	+		19319	31890	15771	15794	21402	21402					0.13136045196188206
ILLYAGVAL	9	Unmodified	_ILLYAGVAL_					0	0	0		nc|ENSG00000150625|P51674-3|GPM6A;nc|ENSG00000150625|P51674-2|GPM6A;ENSG00000150625|ENST00000393658|GPM6A	nc|ENSG00000150625|P51674-3|GPM6A	nc|ENSG00000150625|P51674-3|GPM6A	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.7945251464844	2	466.794404	931.574254	0.4922	0.00022975	-0.75227	-0.00035116	-0.26008	-0.0001214	466.7939124327931	115	1.6641	113.6	113.15	114.81	-1.3977					75	32	4	0	0	0	0.32242	1	10708	10708		60.404	5.639	1	247140			19320	5512	15772	15795	21403	21403					0.10573020459366944
ILLYLYVLN	9	Unmodified	_ILLYLYVLN_					0	0	0			REV__sp|P09716|US17_HCMVAUncharacterizedproteinHVLF1OS=Humancytomegalovirus(strainAD169)OX=10360GN=US17PE=3SV=1	REV__sp|P09716|US17_HCMVAUncharacterizedproteinHVLF1OS=Humancytomegalovirus(strainAD169)OX=10360GN=US17PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3444213867188	2	562.341718	1122.66888	1.2434	0.00069921	1.8105	0.0010181	3.0539	0.0017173	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.6959	1	14138	14138		19.36	5.5846	1	683710	+		19321	29383	15773	15796	21404	21404					0.11245534210706865
ILLYMSWSA	9	Unmodified	_ILLYMSWSA_					0	0	0		nc|ENSG00000170262|Q8TCY5-2|MRAP;ENSG00000170262|ENST00000303645|MRAP;nc|ENSG00000170262|Q8TCY5-1|MRAP	nc|ENSG00000170262|Q8TCY5-2|MRAP	nc|ENSG00000170262|Q8TCY5-2|MRAP	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.2410278320312	2	542.280803	1082.54705	0.28688	0.00015557	3.2764	0.0017767	3.5632	0.0019323	542.2819594586664	46.082	0.61205	46.082	45.844	46.456	0					34	13	4	0	0	0	0.027462	1	3281	3281		26.796	7.4361	1	915640			19322	7085	15774	15797	21405	21405					0.009081688566993762
ILLYSLNLQ	9	Unmodified	_ILLYSLNLQ_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	OvCa99_classI_Rep5	1	538.8225708007812	2	538.82115	1075.62775	0.33652	0.00018133	-0.70806	-0.00038152	-0.37153	-0.00020019	538.8206195582529	72.704	0.78485	72.704	72.45	73.235	0					43	19	3	0	0	0	0.022645	1	7097	7097		143.89	5.0612	1	3397200			19323	4713	15775	15798	21406	21406					0.0929577317122039
ILMDQHLV	8	Unmodified	_ILMDQHLV_					0	0	0			REV__ENST00000554130.5_1_14:96968887-96993844:+|nuORF	REV__ENST00000554130.5_1_14:96968887-96993844:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	484.7698059082031	2	484.76532	967.516088	-0.66433	-0.00032204	4.2527	0.0020615	3.5883	0.0017395	484.7672527547426	52.105	0.60974	52.105	51.912	52.522	0					29	13	3	0	0	0	0.62934	1	4081	4081		57.811	2.3071	1	2597100	+		19324	27524	15776	15799	21407	21407					0.031030155424332406
ILMEEKRPS	9	Oxidation (M)	_ILM(Oxidation (M))EEKRPS_		ILM(1)EEKRPS		ILM(80)EEKRPS	0	0	1			REV__ENST00000261509.10_1_4:169418241-169418295:+|nuORF	REV__ENST00000261509.10_1_4:169418241-169418295:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	559.7968139648438	2	559.797349	1117.58014	-1.4067	-0.00078745	-2.1187	-0.001186	-3.5253	-0.0019735	559.7962962944905	84.284	1.6555	82.023	81.79	83.445	-2.261					82	33	3	0	0	0	0.1804	2	4878	4878;4889		79.713	16.406	1	1750700	+		19325	23954	15777	15800	21408;21409	21408		554			0.026057509087195285
ILMEEKRPS	9	Oxidation (M)	_ILM(Oxidation (M))EEKRPS_					0	0	1			REV__ENST00000261509.10_1_4:169418241-169418295:+|nuORF	REV__ENST00000261509.10_1_4:169418241-169418295:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	559.797349	1117.58014	0.10133	5.6727E-05	-3.3234	-0.0018605	-3.2221	-0.0018037	559.7955414720215	83.644	1.6856	82.045	81.415	83.101	-1.5988	0.065352	0.0014059	NaN	79.713	83	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	443320	+		19326	23954	15777	15800				554			0.026057509087195285
ILMEEKRPS	9	Oxidation (M)	_ILM(Oxidation (M))EEKRPS_					0	0	1			REV__ENST00000261509.10_1_4:169418241-169418295:+|nuORF	REV__ENST00000261509.10_1_4:169418241-169418295:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	559.797349	1117.58014	1.8736	0.0010489	-5.3271	-0.0029821	-3.4534	-0.0019332	559.7942394240879	84.533	1.5747	81.87	81.118	82.693	-2.6629	-0.10913	-0.00083729	NaN	79.713	77	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1302200	+		19327	23954	15777	15800				554			0.026057509087195285
ILMEHIHKL	9	Unmodified	_ILMEHIHKL_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENSG00000108298|ENST00000225430|RPL19;ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	OvCa99_classI_Rep5	1	567.3309326171875	2	567.328619	1132.64269	0.36913	0.00020942	-0.22977	-0.00013035	0.13936	7.9064E-05	567.3283174546731	62.882	1.796	62.882	62.621	64.417	0					124	44	4	0	0	0	0.035142	3	5612	5612;5638;5670		131.03	29.624	1	11609000			19328	2643;11815	15778	15801	21410;21411;21412	21410					0.08166941767581193
ILMEHIHKL	9	Unmodified	_ILMEHIHKL_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENSG00000108298|ENST00000225430|RPL19;ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3275756835938	2	567.328619	1132.64269	0.60989	0.00034601	-0.75814	-0.00043011	-0.14824	-8.4103E-05	567.3279252374853	68.156	1.9481	65.342	65.063	67.011	-2.8144					73	38	3	0	0	0	0.12515	6	2936	2936;2941;2948;2954;2961;2966		90.37	37.018	1	200950			19329	2643;11815	15778	15801	21413;21414;21415;21416;21417;21418	21413					0.08166941767581193
ILMEPDKEHE	10	Unmodified	_ILMEPDKEHE_					0	0	0			REV__ENSG00000147251|ENST00000276202|DOCK11	REV__ENSG00000147251|ENST00000276202|DOCK11	MULTI-MSMS	OvCa9_classI_Rep3	3	620.798828125	2	620.797546	1239.58054	2.9545	0.0018341	-0.10396	-6.4538E-05	2.8505	0.0017696	620.7973066046181	59.56	1.1006	56.461	55.808	56.909	-3.0993					42	28	2	0	0	0	0.78463	1	1958	1958		20.947	1.8434	1	21672	+		19330	20056	15779	15802	21419	21419					-0.029668741620525907
ILMGVLKEV	9	Unmodified	_ILMGVLKEV_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	OvCa99_classI_Rep5	1	501.3080749511719	2	501.306821	1000.59909	2.1155	0.0010605	0.99376	0.00049818	3.1092	0.0015587	501.3069710987831	110.61	0.88888	110.61	110.35	111.24	0					43	19	3	0	0	0	0.064985	1	12551	12551		110.12	12.647	1	1666100			19331	2719	15780	15803	21420	21420					0.09881332270447274
ILMHLLLP	8	Unmodified	_ILMHLLLP_					0	0	0		ENST00000463792.5_1_2:220099420-220100035:+|nuORF;ENST00000477479.5_1_2:220099420-220101164:+|nuORF	ENST00000463792.5_1_2:220099420-220100035:+|nuORF	ENST00000463792.5_1_2:220099420-220100035:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.2976379394531	2	475.298799	948.583045	0.0763	3.6265E-05	-0.65138	-0.0003096	-0.57508	-0.00027333	475.29833051678384	144.12	1.1973	142.69	142.11	143.31	-1.4357					39	22	2	0	0	0	0.7543	1	14108	14108		24.504	0	1	18856			19332	12234	15781	15804	21421	21421					0.10669670824199784
ILMKLGCSKDL	11	Carbamidomethyl (C)	_ILMKLGC(Carbamidomethyl (C))SKDL_	ILMKLGC(1)SKDL		ILMKLGC(44)SKDL		0	1	0		ENST00000396152.6_1_7:33055451-33057091:-|nuORF	ENST00000396152.6_1_7:33055451-33057091:-|nuORF	ENST00000396152.6_1_7:33055451-33057091:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	639.3638305664062	2	639.351434	1276.68831	0.95511	0.00061065	2.7008	0.0017268	3.6559	0.0023374	639.3536021628782	159.69	0.19049	159.69	159.62	159.81	0					6	3	2	0	0	0	0.60323	1	18717	18717		44.377	6.5657	1	114710			19333	11311	15782	15805	21422	21422	119				0.06103799167681245
ILMKNGSSRLT	11	Unmodified	_ILMKNGSSRLT_					0	0	0		ENSG00000167117|ENST00000450727|ANKRD40CL	ENSG00000167117|ENST00000450727|ANKRD40CL	ENSG00000167117|ENST00000450727|ANKRD40CL	MULTI-MSMS	OvCa99_classI_Rep5	1	407.23187255859375	3	407.232424	1218.67544	0.70396	0.00028668	-3.4566	-0.0014076	-2.7526	-0.001121	407.23100616675237	66.388	0.72141	66.388	66.136	66.857	0					60	17	5	0	0	0	0.62561	1	6139	6139		42.338	2.4649	1	10901000			19334	6758	15783	15806	21423	21423					0.07485104099782802
ILMMHHARK	9	Oxidation (M)	_ILMM(Oxidation (M))HHARK_		ILM(0.158)M(0.842)HHARK		ILM(-7.3)M(7.3)HHARK	0	0	1		ENST00000401617.6_1_2:29320804-29354210:+|nuORF;ENST00000438819.1_2_2:29353616-29354210:+|nuORF;ENST00000471165.1_1_2:29353708-29354210:+|nuORF;ENST00000401605.5_1_2:29344333-29354210:+|nuORF	ENST00000401617.6_1_2:29320804-29354210:+|nuORF	ENST00000401617.6_1_2:29320804-29354210:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	576.809326171875	2	576.81007	1151.60559	0.18913	0.00010909	-3.2199	-0.0018573	-3.0308	-0.0017482	576.8080635097848	161.69	0.81448	161.69	161.36	162.18	0					29	15	3	0	0	0	0.50066	1	18976	18976		42.474	6.0277	2	122960			19335	11418	15784	15807	21424	21424		321			0.0358494695014997
ILMQLLLQN	9	Unmodified	_ILMQLLLQN_					0	0	0			REV__tr|A0A553SSF3|A0A553SSF3_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_03015PE=4SV=1	REV__tr|A0A553SSF3|A0A553SSF3_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_03015PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	543.3239135742188	2	543.323002	1084.63145	1.803	0.0009796	1.4862	0.00080751	3.2892	0.0017871	543.3236420308658	136.05	2.1344	136.05	135.73	137.87	0					82	44	4	0	0	0	0.21395	1	15893	15893		73.975	15.193	1	1307400	+		19336	30833	15785	15808	21425	21425					0.09252119673465131
ILMQYQARL	9	Unmodified	_ILMQYQARL_					0	0	0		nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1	nc|ENSG00000197283|Q96PV0-3|SYNGAP1	nc|ENSG00000197283|Q96PV0-3|SYNGAP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.0089111328125	2	568.318251	1134.62195	-0.06193	-3.5196E-05	3.5585	0.0020223	3.4965	0.0019872	568.3201392238309	22.771	0.42472	22.771	22.617	23.042	0					29	9	4	0	0	0	0.027462	1	272	272		30.504	3.7075	1	496010			19337	8697	15786	15809	21426	21426					0.06002351387928684
ILMRSKMNI	9	Unmodified	_ILMRSKMNI_					0	0	0		nc|ENSG00000121446|A5PLK6-4|RGSL1;nc|ENSG00000121446|A5PLK6-5|RGSL1;nc|ENSG00000121446|A5PLK6-3|RGSL1;nc|ENSG00000121446|A5PLK6-2|RGSL1;ENSG00000121446|ENST00000294854|RGSL1	nc|ENSG00000121446|A5PLK6-4|RGSL1	nc|ENSG00000121446|A5PLK6-4|RGSL1	MULTI-MSMS	OvCa99_classI_Rep5	1	553.31640625	2	553.314654	1104.61476	-0.18764	-0.00010383	3.2821	0.0018161	3.0945	0.0017122	553.3161945982771	104.88	0.90472	104.88	104.54	105.44	0					65	20	5	0	0	0	0.059253	1	11756	11756		113.41	3.2917	1	3101200			19338	3485	15787	15810	21427	21427					0.06663295515841128
ILMTYQVPE	9	Unmodified	_ILMTYQVPE_					0	0	0		nc|ENSG00000049246|P56645|PER3;ENSG00000049246|ENST00000377532|PER3	nc|ENSG00000049246|P56645|PER3	nc|ENSG00000049246|P56645|PER3	MULTI-MSMS	OvCa99_classI_Rep5	1	547.2877197265625	2	547.283543	1092.55253	1.1472	0.00062784	3.0116	0.0016482	4.1588	0.002276	547.2851776274272	131.1	0.52138	131.1	130.77	131.29	0					16	8	2	0	0	0	0.27001	1	15214	15214		66.429	3.123	1	123270			19339	1165	15788	15811	21428	21428					0.009958476484825951
ILNAISSLL	9	Unmodified	_ILNAISSLL_					0	0	0		ENST00000295702.8_1_1:155979160-155979334:-|nuORF	ENST00000295702.8_1_1:155979160-155979334:-|nuORF	ENST00000295702.8_1_1:155979160-155979334:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	472.2959289550781	2	472.294768	942.574983	2.2015	0.0010397	0.20952	9.8954E-05	2.411	0.0011387	472.2947944325817	92.782	1.13	92.782	92.216	93.346	0					60	26	3	0	0	0	0.055688	1	10026	10026		115.46	3.8107	1	6437400			19340	10123	15789	15812	21429	21429					0.10139815108436778
ILNAQQVQ	8	Unmodified	_ILNAQQVQ_					0	0	0		ENST00000411980.1_1_2:98822802-98822946:+|nuORF	ENST00000411980.1_1_2:98822802-98822946:+|nuORF	ENST00000411980.1_1_2:98822802-98822946:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.2777404785156	2	457.258717	912.50288	-0.29696	-0.00013579	0.58038	0.00026539	0.28342	0.0001296	457.2588339396136	55.702	0.90096	55.702	55.193	56.094	0					31	21	2	0	0	0	0.028476	1	4554	4554		31.955	0	1	1591800			19341	11545	15790	15813	21430	21430					0.04312900754723614
ILNCMLNSK	9	Unmodified	_ILNCMLNSK_					0	0	0		tr|A0A7D6VQ97|A0A7D6VQ97_9CLOTATPsynthasegammachainOS=ClostridiumintestinaleOX=36845GN=atpGPE=3SV=1	tr|A0A7D6VQ97|A0A7D6VQ97_9CLOTATPsynthasegammachainOS=ClostridiumintestinaleOX=36845GN=atpGPE=3SV=1	tr|A0A7D6VQ97|A0A7D6VQ97_9CLOTATPsynthasegammachainOS=ClostridiumintestinaleOX=36845GN=atpGPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.7998657226562	2	518.269912	1034.52527	-0.67838	-0.00035158	-0.019993	-1.0362E-05	-0.69837	-0.00036194	518.7702557213851	86.685	0.50333	84.508	84.23	84.734	-2.1768					16	9	2	0	0	0	0.027456	1	5144	5144		16.473	0	1	33364			19342	34831	15791	15814	21431	21431					0.009390408364652103
ILNDGEMHG	9	Unmodified	_ILNDGEMHG_					0	0	0			REV__tr|A0A7D6ZIH4|A0A7D6ZIH4_9CLOTGGDEFdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04205PE=4SV=1	REV__tr|A0A7D6ZIH4|A0A7D6ZIH4_9CLOTGGDEFdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04205PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.32464599609375	2	493.224017	984.43348	-0.56719	-0.00027975	1.0887	0.00053695	0.52147	0.0002572	493.22444702184043	80.986	1.031	78.275	77.954	78.985	-2.7106					63	20	4	0	0	0	0.027408	1	6622	6622		38.806	0	1	464920	+		19343	32056	15792	15815	21432	21432					-0.05935926256336188
ILNDKRHIL	9	Unmodified	_ILNDKRHIL_					0	0	0		WDR48|p.N504Afs*10|1|0.18|ENSG00000114742|chr3:39088161-39088177|GAAATGGATATTTTCAA/-|frameshift_variant;nc|ENSG00000114742|Q8TAF3-4|WDR48;nc|ENSG00000114742|Q8TAF3-3|WDR48;ENSG00000114742|ENST00000302313|WDR48	WDR48|p.N504Afs*10|1|0.18|ENSG00000114742|chr3:39088161-39088177|GAAATGGATATTTTCAA/-|frameshift_variant	WDR48|p.N504Afs*10|1|0.18|ENSG00000114742|chr3:39088161-39088177|GAAATGGATATTTTCAA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	561.3399047851562	2	561.343115	1120.67168	-1.7513	-0.00098306	-4.3957	-0.0024675	-6.147	-0.0034506	561.3403149764221	137.83	1.0288	136.74	136.43	137.46	-1.0858					43	20	3	0	0	0	0.59983	1	11260	11260		31.955	2.1133	1	45230			19344	3037	15793	15816	21433	21433					0.11616802388243741
ILNDPRVII	9	Unmodified	_ILNDPRVII_					0	0	0		tr|A0A7D7A250|A0A7D7A250_9CLOTGlutathionylspermidinesynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18215PE=4SV=1	tr|A0A7D7A250|A0A7D7A250_9CLOTGlutathionylspermidinesynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18215PE=4SV=1	tr|A0A7D7A250|A0A7D7A250_9CLOTGlutathionylspermidinesynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18215PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	526.82861328125	2	526.826766	1051.63898	2.1162	0.0011149	0.64206	0.00033825	2.7583	0.0014531	526.826893987935	102.83	0.97441	102.83	102.12	103.1	0					33	22	3	0	0	0	0.35444	1	11480	11480		56.721	0	1	1050900			19345	36061	15794	15817	21434	21434					0.11522595265387281
ILNEGSIPPN	10	Unmodified	_ILNEGSIPPN_					0	0	0			REV__nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	REV__nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-MSMS	OvCa99_classI_Rep5	1	527.2840576171875	2	527.282389	1052.55022	-0.60687	-0.00031999	-0.5352	-0.0002822	-1.1421	-0.00060219	527.2822314364422	51.642	3.3838	51.642	51.248	54.632	0					222	79	6	0	0	0	0.52439	1	4141	4141		51.193	1.6567	1	134030000	+		19346	20102	15795	15818	21435	21435					0.026051352350577872
ILNINRLSV	9	Unmodified	_ILNINRLSV_					0	0	0			REV__ENST00000441188.2_1_X:92478653-92479352:-|nuORF	REV__ENST00000441188.2_1_X:92478653-92479352:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.8440551757812	2	521.324391	1040.63423	2.1442	0.0011178	4.3228	0.0022536	6.467	0.0033714	521.8297436825155	94.115	0.21334	94.115	94.007	94.22	0					6	4	2	0	0	0	0.027462	1	10241	10241		20.947	0	1	143090	+		19347	25842	15796	15819	21436	21436					0.11553711122587629
ILNIRSLVK	9	Unmodified	_ILNIRSLVK_					0	0	0		tr|A0A7D6W299|A0A7D6W299_9CLOTMoxRfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05435PE=4SV=1	tr|A0A7D6W299|A0A7D6W299_9CLOTMoxRfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05435PE=4SV=1	tr|A0A7D6W299|A0A7D6W299_9CLOTMoxRfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05435PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.810791015625	2	528.350409	1054.68626	1.5806	0.0008351	0.017871	9.4421E-06	1.5985	0.00084454	528.8518127436556	127.77	0.18523	127.77	127.67	127.86	0					6	3	2	0	0	0	0.027461	1	14788	14788		25.574	3.6142	1	27377			19348	35424	15797	15820	21437	21437					0.1611087453638902
ILNKILVF	8	Unmodified	_ILNKILVF_					0	0	0			REV__ENST00000376414.4_1_13:99946981-99947236:-|nuORF	REV__ENST00000376414.4_1_13:99946981-99947236:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.3168640136719	2	480.318046	958.621539	4.0104	0.0019263	-4.1147	-0.0019764	-0.10425	-5.0071E-05	480.3158855709112	132.07	1.2133	130.57	130.27	131.48	-1.5014					57	23	4	0	0	0	0.73288	1	12740	12740		35.201	1.6851	1	95732	+		19349	25099	15798	15821	21438	21438					0.14057299730382056
ILNKLIINI	9	Unmodified	_ILNKLIINI_					0	0	0		tr|A0A7D6ZVQ8|A0A7D6ZVQ8_9CLOTSpo0Efamilysporulationregulatoryprotein-asparticacidphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_15865PE=4SV=1	tr|A0A7D6ZVQ8|A0A7D6ZVQ8_9CLOTSpo0Efamilysporulationregulatoryprotein-asparticacidphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_15865PE=4SV=1	tr|A0A7D6ZVQ8|A0A7D6ZVQ8_9CLOTSpo0Efamilysporulationregulatoryprotein-asparticacidphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_15865PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.3555297851562	2	527.35516	1052.69577	2.005	0.0010573	-1.8912	-0.00099732	0.11383	6.0028E-05	527.3539674551008	135.6	1.3745	134.05	133.71	135.08	-1.5437					52	27	3	0	0	0	0.65476	1	13155	13155		25.45	0	1	89870			19350	35809	15799	15822	21439	21439					0.17152642821906738
ILNKLIRVL	9	Unmodified	_ILNKLIRVL_					0	0	0			REV__AP1G1|p.N739Kfs*28|1|0.05|ENSG00000166747|chr16:71738993-71738994|-/C|frameshift_variant;REV__ENST00000565009.5_1_16:71790048-71805048:-|nuORF	REV__ENST00000565009.5_1_16:71790048-71805048:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	541.3776245117188	2	541.376426	1080.7383	-1.8893	-0.0010228	0.47778	0.00025866	-1.4115	-0.00076417	541.3765459194157	104.3	0.71806	104.3	103.98	104.7	0					49	16	4	0	0	0	0.19716	1	11689	11689		76.847	11.043	1	2704900	+		19351	15644;27673	15800	15823	21440	21440					0.20116037950151622
ILNKPLQL	8	Unmodified	_ILNKPLQL_					0	0	0		ENSG00000118515|ENST00000367858|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-4|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;ENST00000474427.6_1_6:134492115-134492442:-|nuORF	ENSG00000118515|ENST00000367858|SGK1	ENSG00000118515|ENST00000367858|SGK1	MULTI-MSMS	OvCa9_classI_Rep2	2	469.8048095703125	2	469.805303	937.596052	1.6673	0.00078329	-1.4958	-0.00070272	0.1715	8.0571E-05	469.80448066325135	89.164	1.9776	87.796	87.379	89.356	-1.3676					94	39	4	0	0	0	0.2589	3	7843	7837;7843;7848		114.59	19.909	1	442660			19352	3313	15801	15824	21441;21442;21443	21442					0.12475825207945945
ILNKPLQL	8	Unmodified	_ILNKPLQL_					0	0	0		ENSG00000118515|ENST00000367858|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-4|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;ENST00000474427.6_1_6:134492115-134492442:-|nuORF	ENSG00000118515|ENST00000367858|SGK1	ENSG00000118515|ENST00000367858|SGK1	MULTI-MSMS	OvCa9_classI_Rep3	3	469.80572509765625	2	469.805303	937.596052	-0.20809	-9.776E-05	0.20342	9.5568E-05	-0.0046666	-2.1924E-06	469.8053033638793	89.853	1.7351	87.772	87.49	89.225	-2.0805					74	33	3	0	0	0	0.23304	1	5549	5549		119.22	13.952	1	694800			19353	3313	15801	15824	21444	21444					0.12475825207945945
ILNKPLQL	8	Unmodified	_ILNKPLQL_					0	0	0		ENSG00000118515|ENST00000367858|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-4|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;ENST00000474427.6_1_6:134492115-134492442:-|nuORF	ENSG00000118515|ENST00000367858|SGK1	ENSG00000118515|ENST00000367858|SGK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	469.8059387207031	2	469.805303	937.596052	0.67255	0.00031597	-0.62814	-0.0002951	0.044414	2.0866E-05	469.80491525625797	90.336	1.8814	87.761	87.45	89.331	-2.575					83	36	4	0	0	0	0.31087	3	7796	7773;7783;7796		105.27	15.344	1	546410			19354	3313	15801	15824	21445;21446;21447	21447					0.12475825207945945
ILNKPLQL	8	Unmodified	_ILNKPLQL_					0	0	0		ENSG00000118515|ENST00000367858|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-4|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;ENST00000474427.6_1_6:134492115-134492442:-|nuORF	ENSG00000118515|ENST00000367858|SGK1	ENSG00000118515|ENST00000367858|SGK1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	469.805303	937.596052	2.4521	0.001152	-0.050937	-2.3931E-05	2.4012	0.0011281	469.8051186916965	87.668	1.0066	87.668	87.42	88.426	0	-0.081741	0.00039387	NaN	119.22	56	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2660300			19355	3313	15801	15824							0.12475825207945945
ILNLHKLLI	9	Unmodified	_ILNLHKLLI_					0	0	0			REV__HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|107|1|anti-sense	REV__HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|107|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	538.863037109375	2	538.863152	1075.71175	0.50313	0.00027112	-1.3946	-0.0007515	-0.89148	-0.00048038	538.8625358740957	133.13	11.263	132	131.63	142.9	-1.1249					494	228	5	0	0	0	0.44294	1	10881	10881		47.916	1.9636	1	10229000	+		19356	28246	15802	15825	21448	21448					0.17692349058802392
ILNLKEQQKL	10	Unmodified	_ILNLKEQQKL_					0	0	0			REV__nc|ENSG00000136603|P12757-3|SKIL	REV__nc|ENSG00000136603|P12757-3|SKIL	MULTI-MSMS	OvCa99_classI_Rep5	1	409.5863342285156	3	409.587084	1225.73942	0.6831	0.00027979	-2.8807	-0.0011799	-2.1976	-0.00090009	409.58583111759486	35.291	0.65636	35.291	35.004	35.661	0					35	13	4	0	0	0	0.67987	1	1770	1770		32.751	1.1163	1	485200	+		19357	19394	15803	15826	21449	21449					0.13558207528376442
ILNLLHIKGG	10	Unmodified	_ILNLLHIKGG_					0	0	0		nc|ENSG00000170927|P08F94-2|PKHD1;PKHD1|p.A3983Kfs*44|1|0.16|ENSG00000170927|chr6:51619327-51619360|CAGGTACACCTGCTGAGCAGGAGCACCTGGAGCA/-|frameshift_variant;ENSG00000170927|ENST00000371117|PKHD1;PKHD1|p.P2004Hfs*49|1|0.03|ENSG00000170927|chr6:51934220-51934221|-/T|frameshift_variant	nc|ENSG00000170927|P08F94-2|PKHD1	nc|ENSG00000170927|P08F94-2|PKHD1	MULTI-MSMS	OvCa99_classI_Rep5	1	539.344970703125	2	539.342584	1076.67061	2.268	0.0012232	3.585	0.0019335	5.853	0.0031567	539.3442752178589	113.16	0.67177	113.16	112.74	113.42	0					34	14	3	0	0	0	0.59703	1	12883	12883		42.396	3.59	1	231770			19358	7155	15804	15827	21450	21450					0.13534588019319926
ILNLLITSL	9	Unmodified	_ILNLLITSL_					0	0	0		ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	ENSG00000155561|ENST00000285968|NUP205	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.305908203125	2	500.326068	998.637583	2.5466	0.0012741	-0.85948	-0.00043002	1.6871	0.00084412	500.3257236251469	96.48	0.24639	96.48	96.296	96.543	0					6	5	2	0	0	0	0.027462	1	10570	10570		17.365	0	1	92904			19359	5790	15805	15828	21451	21451					0.1382096117661149
ILNLLKHLL	9	Unmodified	_ILNLLKHLL_					0	0	0			REV__ENST00000428881.1_1_1:171652270-171652387:-|nuORF	REV__ENST00000428881.1_1_1:171652270-171652387:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	538.8623046875	2	538.863152	1075.71175	0.50313	0.00027112	-1.3946	-0.0007515	-0.89148	-0.00048038	538.8625358740957	133.13	11.263	132	131.63	142.9	-1.1249					494	228	5	0	0	0	0.53957	1	10814	10814		38.806	1.647	1	10229000	+		19360	25696	15806	15829	21452	21452					0.17692349058779655
ILNLLKHLL	9	Unmodified	_ILNLLKHLL_					0	0	0			REV__ENST00000428881.1_1_1:171652270-171652387:-|nuORF	REV__ENST00000428881.1_1_1:171652270-171652387:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.86328125	2	538.863152	1075.71175	2.6703	0.0014389	-4.1829	-0.002254	-1.5125	-0.00081505	538.8612720845362	133.45	7.6689	131.93	131.41	139.08	-1.5257					434	157	6	0	0	0	0.42057	1	13122	13122		50.025	4.0726	1	17348000	+		19361	25696	15806	15829	21453	21453					0.17692349058779655
ILNLNKMVK	9	Unmodified	_ILNLNKMVK_					0	0	0		nc|ENSG00000117215|Q9UNK4-2|PLA2G2D;ENSG00000117215|ENST00000375105|PLA2G2D	nc|ENSG00000117215|Q9UNK4-2|PLA2G2D	nc|ENSG00000117215|Q9UNK4-2|PLA2G2D	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.2689208984375	2	536.830995	1071.64744	-1.304	-0.00070005	0.22337	0.00011991	-1.0807	-0.00058014	536.8310622782304	63.416	0.86487	59.941	59.48	60.345	-3.475					29	17	2	0	0	0	0.027462	1	4421	4421		16.473	0	1	71475			19362	3243	15807	15830	21454	21454					0.11447825910340725
ILNLSVEYKA	10	Unmodified	_ILNLSVEYKA_					0	0	0			REV__ENST00000478122.6_1_12:111052207-111066834:+|nuORF	REV__ENST00000478122.6_1_12:111052207-111066834:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	575.3269653320312	2	575.329339	1148.64412	1.5736	0.00090532	-4.0387	-0.0023236	-2.4651	-0.0014183	575.326831653089	27.545	0.48966	24.836	24.66	25.15	-2.7097					17	11	2	0	0	0	0.73063	1	479	479		27.047	2.8446	1	19979	+		19363	26404	15808	15831	21455	21455					0.07574854337326542
ILNLTGVRVA	10	Unmodified	_ILNLTGVRVA_					0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	MULTI-MSMS	OvCa9_classI_Rep2	2	528.3328857421875	2	528.332216	1054.64988	3.0268	0.0015991	-3.0942	-0.0016348	-0.067462	-3.5642E-05	528.330384856165	25.512	0.98969	22.802	22.428	23.418	-2.7097					46	22	4	0	0	0	0.79213	1	304	304		19.997	2.5288	1	151950	+		19364	22473	15809	15832	21456	21456					0.12473997639676782
ILNNKIPEA	9	Unmodified	_ILNNKIPEA_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11;RBFA-SPG11|2|fusion;RBFA-SPG11|1|fusion	nc|ENSG00000104133|Q96JI7-3|SPG11;RBFA-SPG11|2|fusion	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	OvCa99_classI_Rep5	1	506.29638671875	2	506.295299	1010.57605	-0.36591	-0.00018526	0.7164	0.00036271	0.35049	0.00017745	506.2955629528433	69.531	0.49124	69.531	69.307	69.798	0					20	11	2	0	0	0	0.010652	1	6624	6624		166.68	65.078	1	2782400			19365	2354;15543	15810	15833	21457	21457					0.07118029477317123
ILNNLKEVL	9	Unmodified	_ILNNLKEVL_					0	0	0		tr|A0A7D6W0Q8|A0A7D6W0Q8_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00465PE=4SV=1	tr|A0A7D6W0Q8|A0A7D6W0Q8_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00465PE=4SV=1	tr|A0A7D6W0Q8|A0A7D6W0Q8_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00465PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.3084716796875	2	528.326599	1054.63865	-0.8325	-0.00043983	0.47302	0.00024991	-0.35948	-0.00018992	528.3265985483206	94.169	1.5966	93.069	92.749	94.345	-1.0995					66	31	3	0	0	0	0.027462	1	8575	8575		42.396	5.237	1	232520			19366	35385	15811	15834	21458	21458					0.11351175545519254
ILNPDNSFEIL	11	Unmodified	_ILNPDNSFEIL_					0	0	0		nc|ENSG00000127022|P27824-3|CANX;ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX	nc|ENSG00000127022|P27824-3|CANX	nc|ENSG00000127022|P27824-3|CANX	MULTI-MSMS	OvCa99_classI_Rep5	1	637.8369750976562	2	637.834985	1273.65542	1.5625	0.00099659	0.20291	0.00012943	1.7654	0.001126	637.835077784594	143.74	2.5604	143.74	143.27	145.83	0					129	52	6	0	0	0	8.359E-05	2	16801	16801;16825		178.55	88.178	1	4616100			19367	3815	15812	15835	21459;21460	21459					0.029536316408439234
ILNPDNSFEIL	11	Unmodified	_ILNPDNSFEIL_					0	0	0		nc|ENSG00000127022|P27824-3|CANX;ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX	nc|ENSG00000127022|P27824-3|CANX	nc|ENSG00000127022|P27824-3|CANX	MULTI-MSMS	OvCa9_classI_Rep2	2	637.8347778320312	2	637.834985	1273.65542	-2.1907	-0.0013973	2.2766	0.0014521	0.085861	5.4765E-05	637.8362697686604	141.23	0.49661	141	140.78	141.27	-0.22696					28	9	4	0	0	0	0.52474	2	14142	14142;14172		51.528	10.101	1	85340			19368	3815	15812	15835	21461;21462	21461					0.029536316408439234
ILNPDNSFEIL	11	Unmodified	_ILNPDNSFEIL_					0	0	0		nc|ENSG00000127022|P27824-3|CANX;ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX	nc|ENSG00000127022|P27824-3|CANX	nc|ENSG00000127022|P27824-3|CANX	MULTI-MSMS	OvCa9_classI_Rep3	3	637.8348388671875	2	637.834985	1273.65542	-2.3478	-0.0014975	2.3725	0.0015133	0.024772	1.58E-05	637.8363950156421	141.82	0.54611	140.81	140.59	141.13	-1.0106					28	10	3	0	0	0	0.15616	1	11745	11745		85.862	36.326	1	123960			19369	3815	15812	15835	21463	21463					0.029536316408439234
ILNPDNSFEIL	11	Unmodified	_ILNPDNSFEIL_					0	0	0		nc|ENSG00000127022|P27824-3|CANX;ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX	nc|ENSG00000127022|P27824-3|CANX	nc|ENSG00000127022|P27824-3|CANX	MULTI-MATCH	OvCa9_classI_Rep2	2		2	637.834985	1273.65542	-2.7499	-0.001754	5.594	0.0035681	2.8441	0.0018141	637.8384808285757	143.86	2.1299	143.63	143	145.13	-0.22697	-0.046803	0.0037714	NaN	178.55	51	42	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10095			19370	3815	15812	15835							0.029536316408439234
ILNPDNSFEIL	11	Unmodified	_ILNPDNSFEIL_					0	0	0		nc|ENSG00000127022|P27824-3|CANX;ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX	nc|ENSG00000127022|P27824-3|CANX	nc|ENSG00000127022|P27824-3|CANX	MULTI-MATCH	OvCa9_classI_Rep3	3		2	637.834985	1273.65542	-3.0231	-0.0019283	5.5819	0.0035603	2.5588	0.0016321	637.8383349478945	144.64	1.2403	143.67	143.15	144.39	-0.97299	-0.011717	0.0037559	NaN	178.55	31	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12581			19371	3815	15812	15835							0.029536316408439234
ILNPDNSFEIL	11	Unmodified	_ILNPDNSFEIL_					0	0	0		nc|ENSG00000127022|P27824-3|CANX;ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX	nc|ENSG00000127022|P27824-3|CANX	nc|ENSG00000127022|P27824-3|CANX	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	637.834985	1273.65542	0.50997	0.00032528	-0.049847	-3.1794E-05	0.46013	0.00029348	637.8347414740941	142.3	0.5274	140.83	140.55	141.08	-1.4627	-0.04949	-0.0025029	NaN	85.862	25	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75593			19372	3815	15812	15835							0.029536316408439234
ILNQTLLNVAI	11	Unmodified	_ILNQTLLNVAI_					0	0	0		tr|A0A553SFG3|A0A553SFG3_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08835PE=3SV=1	tr|A0A553SFG3|A0A553SFG3_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08835PE=3SV=1	tr|A0A553SFG3|A0A553SFG3_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08835PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3690795898438	2	606.371538	1210.72852	-2.264	-0.0013728	-1.0272	-0.00062285	-3.2912	-0.0019957	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.72064	1	12399	12399		22.58	1.7425	1	205770			19373	33036	15813	15836	21464	21464					0.13158805154102993
ILNRLVAVL	9	Unmodified	_ILNRLVAVL_					0	0	0			REV__tr|A0A553SFY1|A0A553SFY1_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09695PE=4SV=1	REV__tr|A0A553SFY1|A0A553SFY1_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09695PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	504.95123291015625	2	505.839677	1009.6648	-1.0159	-0.00051388	1.1757	0.0005947	0.15978	8.0821E-05	505.83992458333796	76.549	0.46808	74.695	74.466	74.934	-1.854					11	8	2	0	0	0	0.027462	1	6319	6319		33.516	6.8227	1	18657	+		19374	29634	15814	15837	21465	21465					0.16035489507646616
ILNRVRGL	8	Unmodified	_ILNRVRGL_					0	0	0		HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|1|1|sense	HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|1|1|sense	HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|1|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.7877502441406	2	470.806168	939.597784	-0.13411	-6.314E-05	3.1449	0.0014806	3.0108	0.0014175	470.80971382082026	40.734	0.313	37.78	37.58	37.893	-2.9541					9	5	3	0	0	0	0.028476	1	1765	1765		20.482	0	1	24366			19375	14441	15815	15838	21466	21466					0.12556879016551648
ILNSLLPRA	9	Unmodified	_ILNSLLPRA_					0	0	0		PHKA1|p.R1066Ifs*45|1|0.07|ENSG00000067177|chrX:72593150-72593151|-/ATTCGACCCAGCAATCCCATTACTAGGTA|frameshift_variant;nc|ENSG00000067177|P46020-3|PHKA1;nc|ENSG00000067177|P46020-2|PHKA1;ENSG00000067177|ENST00000373542|PHKA1	PHKA1|p.R1066Ifs*45|1|0.07|ENSG00000067177|chrX:72593150-72593151|-/ATTCGACCCAGCAATCCCATTACTAGGTA|frameshift_variant	PHKA1|p.R1066Ifs*45|1|0.07|ENSG00000067177|chrX:72593150-72593151|-/ATTCGACCCAGCAATCCCATTACTAGGTA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.7897033691406	2	498.813659	995.612765	-0.26332	-0.00013135	4.2683	0.0021291	4.005	0.0019977	498.81549525336936	116.42	0.61101	115.05	114.84	115.46	-1.3645					12	11	2	0	0	0	0.027462	1	10868	10868		37.159	9.2769	1	6179.2			19376	15494	15816	15839	21467	21467					0.114783260938907
ILNYSGHF	8	Unmodified	_ILNYSGHF_					0	0	0		tr|A0A7D6VTT7|A0A7D6VTT7_9CLOTHD-GYPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18285PE=4SV=1	tr|A0A7D6VTT7|A0A7D6VTT7_9CLOTHD-GYPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18285PE=4SV=1	tr|A0A7D6VTT7|A0A7D6VTT7_9CLOTHD-GYPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18285PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	474.7720947265625	2	475.74016	949.465767	1.3032	0.00061998	-1.5684	-0.00074613	-0.26516	-0.00012615	475.7391816373304	37.409	0.64853	34.517	34.293	34.941	-2.8925					18	12	2	0	0	0	0.028476	1	1406	1406		26.796	2.5934	1	25163			19377	35143	15817	15840	21468	21468					-0.0109877079104308
ILPAAKNGIL	10	Unmodified	_ILPAAKNGIL_					0	0	0		tr|A0A7D6VTP4|A0A7D6VTP4_9CLOTPhosphatetransportsystempermeaseproteinOS=ClostridiumintestinaleOX=36845GN=pstCPE=3SV=1	tr|A0A7D6VTP4|A0A7D6VTP4_9CLOTPhosphatetransportsystempermeaseproteinOS=ClostridiumintestinaleOX=36845GN=pstCPE=3SV=1	tr|A0A7D6VTP4|A0A7D6VTP4_9CLOTPhosphatetransportsystempermeaseproteinOS=ClostridiumintestinaleOX=36845GN=pstCPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	504.7452392578125	2	505.32386	1008.63317	-1.9866	-0.0010039	1.764	0.0008914	-0.2226	-0.00011248	505.3244988567933	125.1	0.97375	123.71	123.44	124.41	-1.3908					30	18	2	0	0	0	0.027177	1	11888	11888		7.1934	0.45781	1	22551			19378	35131	15818	15841	21469	21469					0.12919496753693238
ILPEARGNIVD	11	Unmodified	_ILPEARGNIVD_					0	0	0			REV__tr|A0A553SRL0|A0A553SRL0_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_01215PE=4SV=1	REV__tr|A0A553SRL0|A0A553SRL0_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_01215PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	598.3445434570312	2	598.83532	1195.65609	1.8155	0.0010872	-3.8633	-0.0023135	-2.0478	-0.0012263	599.335435467029	86.118	0.2495	83.472	83.344	83.593	-2.6463					6	4	2	0	0	0	0.025605	1	7263	7263		54.722	15.47	1	7712.2	+		19379	30743	15819	15842	21470	21470					0.06608471080494382
ILPEGLVTFLL	11	Unmodified	_ILPEGLVTFLL_					0	0	0			REV__ENST00000550033.5_1_12:53701834-53703447:-|nuORF	REV__ENST00000550033.5_1_12:53701834-53703447:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	405.5830383300781	3	405.58468	1213.73221	1.6628	0.00067442	-2.9452	-0.0011945	-1.2824	-0.00052012	405.5831216090262	68.754	1.6998	65.94	65.511	67.211	-2.8144					78	33	4	0	0	0	0.68757	1	3008	3008		33.922	1.1711	1	296870	+		19380	17278	15820	15843	21471	21471					0.13389474927953415
ILPEKRPAEI	10	Unmodified	_ILPEKRPAEI_					0	0	0		nc|ENSG00000167723|Q8NET8-3|TRPV3;ENSG00000167723|ENST00000576742|TRPV3;nc|ENSG00000167723|Q8NET8-2|TRPV3	nc|ENSG00000167723|Q8NET8-3|TRPV3	nc|ENSG00000167723|Q8NET8-3|TRPV3	MSMS	OvCa9_classI_Rep4_	4	583.3523559570312	2	583.350606	1164.68666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.141	1	18.803	18.303	19.303	-1.3386								0	0	0	0.14189	1	16	16		34.173	1.3601	1				19381	6838	15821	15844	21472	21472					0.11090249465564739
ILPFSSHKCQ	10	Unmodified	_ILPFSSHKCQ_					0	0	0			REV__ENST00000484179.5_1_2:61493011-61508284:-|nuORF	REV__ENST00000484179.5_1_2:61493011-61508284:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.3176879882812	2	580.300059	1158.58556	1.2633	0.00073311	-2.5012	-0.0014515	-1.2379	-0.00071835	580.2985258995488	93.668	1.0013	93.668	93.263	94.264	0					40	23	2	0	0	0	0.027028	1	10196	10196		31.53	10.583	1	4180900	+		19382	26544	15822	15845	21473	21473					0.012614744912298193
ILPFSSHKCQ	10	Unmodified	_ILPFSSHKCQ_					0	0	0			REV__ENST00000484179.5_1_2:61493011-61508284:-|nuORF	REV__ENST00000484179.5_1_2:61493011-61508284:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	580.300059	1158.58556	-0.7173	-0.00041625	-3.2786	-0.0019026	-3.9959	-0.0023188	580.2978271559123	94.861	1.133	93.761	93.46	94.593	-1.0995	-0.11217	-0.0006051	NaN	39.253	35	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40337	+		19383	26544	15822	15845							0.012614744912298193
ILPFSSHKCQ	10	Unmodified	_ILPFSSHKCQ_					0	0	0			REV__ENST00000484179.5_1_2:61493011-61508284:-|nuORF	REV__ENST00000484179.5_1_2:61493011-61508284:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	580.300059	1158.58556	-1.783	-0.0010347	-2.198	-0.0012755	-3.981	-0.0023102	580.2986010813746	95.848	1.3598	94.019	93.78	95.14	-1.8286	0.14622	0.00064911	NaN	39.253	44	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58565	+		19384	26544	15822	15845							0.012614744912298193
ILPFSSHKCQ	10	Unmodified	_ILPFSSHKCQ_					0	0	0			REV__ENST00000484179.5_1_2:61493011-61508284:-|nuORF	REV__ENST00000484179.5_1_2:61493011-61508284:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	580.300059	1158.58556	-0.16645	-9.6592E-05	-3.118	-0.0018094	-3.2844	-0.0019059	580.2978324111173	96.47	1.8134	94.045	93.406	95.22	-2.4256	0.1716	-0.00041862	NaN	39.253	48	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48087	+		19385	26544	15822	15845							0.012614744912298193
ILPGSLFRF	9	Unmodified	_ILPGSLFRF_					0	0	0		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-MSMS	OvCa99_classI_Rep5	1	525.3121948242188	2	525.310752	1048.60695	1.0232	0.00053752	0.9654	0.00050713	1.9886	0.0010447	525.3110024220949	130.94	2.7397	130.94	130.01	132.75	0					146	57	5	0	0	0	0.055627	4	15201	15166;15178;15201;15226		115.49	58.773	1	3029900			19386	4496	15823	15846	21474;21475;21476;21477	21476					0.08459227582216045
ILPHVDIQL	9	Unmodified	_ILPHVDIQL_					0	0	0		nc|ENSG00000182054|P48735-2|IDH2;ENSG00000182054|ENST00000330062|IDH2	nc|ENSG00000182054|P48735-2|IDH2	nc|ENSG00000182054|P48735-2|IDH2	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.31396484375	2	524.313492	1046.61243	-1.6335	-0.00085646	1.2019	0.00063016	-0.43161	-0.0002263	524.3140565145617	124.49	2.9158	123.1	122.13	125.04	-1.3908					109	57	3	0	0	0	0.28934	1	11740	11740		64.207	3.2353	1	87546			19387	7964	15824	15847	21478	21478					0.09098906374038052
ILPISPAR	8	Unmodified	_ILPISPAR_					0	0	0			REV__chr19:43608107-43611989|199|10.48|0.63|4.05|-|0|ZNF428,None|2	REV__chr19:43608107-43611989|199|10.48|0.63|4.05|-|0|ZNF428,None|2	MULTI-MSMS	OvCa9_classI_Rep4_	4	433.7770690917969	2	433.776545	865.538538	1.3486	0.00058498	-1.5043	-0.00065254	-0.15575	-6.7562E-05	433.775716822817	84.294	1.329	81.632	81.265	82.594	-2.6629					64	27	3	0	0	0	0.66704	1	7060	7060		50.025	0	1	776900	+		19388	15978	15825	15848	21479	21479					0.10038983002357327
ILPKGVRSL	9	Unmodified	_ILPKGVRSL_					0	0	0			REV__CCDC180|p.H1510Ffs*11|1|0.03|ENSG00000197816|chr9:97370685-97370686|-/TT|frameshift_variant	REV__CCDC180|p.H1510Ffs*11|1|0.03|ENSG00000197816|chr9:97370685-97370686|-/TT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	491.82421875	2	491.824027	981.633501	0.46179	0.00022712	-0.7084	-0.00034841	-0.24661	-0.00012129	491.82354825905855	68.425	1.4991	65.61	65.262	66.761	-2.8144					71	29	4	0	0	0	0.48324	1	2988	2988		44.117	5.0953	1	317880	+		19389	15749	15826	15849	21480	21480					0.1419491647357063
ILPKKSAEEL	10	Unmodified	_ILPKKSAEEL_					0	0	0			REV__tr|A0A553SPC6|A0A553SPC6_NIACIUDP-N-acetylmuramoylalanine--D-glutamateligaseOS=NialliacirculansOX=1397GN=murDPE=3SV=1	REV__tr|A0A553SPC6|A0A553SPC6_NIACIUDP-N-acetylmuramoylalanine--D-glutamateligaseOS=NialliacirculansOX=1397GN=murDPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	564.8092651367188	2	564.337164	1126.65977	-0.86492	-0.00048811	0.3287	0.0001855	-0.53622	-0.00030261	564.3383680976114	95.293	1.2937	93.398	93.161	94.454	-1.8956					39	24	4	0	0	0	0.026915	1	6211	6211		44.117	12.162	1	36757	+		19390	30524	15827	15850	21481	21481					0.10151140854372898
ILPNLVDAMEK	11	Unmodified	_ILPNLVDAMEK_					0	0	0			REV__ENST00000518946.1_1_5:153372538-153374550:-|nuORF	REV__ENST00000518946.1_1_5:153372538-153374550:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	621.8436279296875	2	621.841756	1241.66896	1.634	0.0010161	-0.87491	-0.00054406	0.75906	0.00047202	621.8401925180377	78.676	0.98792	78.676	78.214	79.202	0					53	23	3	0	0	0	0.5466	1	7963	7963		49.536	3.0793	1	2363900	+		19391	16709	15828	15851	21482	21482					0.057791661483634016
ILPPISKQLSA	11	Unmodified	_ILPPISKQLSA_					0	0	0			REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9	REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9	MULTI-MSMS	OvCa9_classI_Rep4_	4	583.8577270507812	2	583.860806	1165.70706	-5.3703	-0.0031355	1.9798	0.0011559	-3.3905	-0.0019796	583.8618452827162	155.36	1.2983	153.87	153.54	154.84	-1.4911					100	37	4	0	0	0	0.72479	1	15410	15410		18.262	0.79408	1	230740	+		19392	16315	15829	15852	21483	21483					0.13083420125371958
ILPPLRVII	9	Unmodified	_ILPPLRVII_					0	0	0			REV__ENSG00000186088|ENST00000257626|GSAP	REV__ENSG00000186088|ENST00000257626|GSAP	MULTI-MSMS	OvCa9_classI_Rep3	3	517.3594360351562	2	517.360245	1032.70594	-0.63272	-0.00032734	0.17774	9.1954E-05	-0.45498	-0.00023539	517.3601946717101	136.63	2.1947	135.53	135.15	137.35	-1.1023					115	44	4	0	0	0	0.32337	1	11121	11121		60.294	6.9425	1	468020	+		19393	22554	15830	15853	21484	21484					0.19089250547131087
ILPPQLALF	9	Unmodified	_ILPPQLALF_					0	0	0		ENSG00000106546|ENST00000242057|AHR;AHR|p.N284Kfs*16|1|0.03|ENSG00000106546|chr7:17334057-17334058|-/AATGATCCTCACCCTGTACAGACCTAAGCTAATG|frameshift_variant;AHR|p.Q513Hfs*9|1|0.06|ENSG00000106546|chr7:17339363-17339364|-/TTTACGAAAACGAAATACG|frameshift_variant;AHR|p.S522Yfs*21|1|0.06|ENSG00000106546|chr7:17339390-17339390|C/-|frameshift_variant	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	OvCa99_classI_Rep5	1	506.31707763671875	2	506.315503	1010.61645	0.67561	0.00034207	0.8138	0.00041204	1.4894	0.00075411	506.3157645065489	159.61	1.5206	159.61	159.14	160.66	0					73	30	3	0	0	0	0.14739	4	18704	18680;18704;18727;18753		85.359	18.032	1	361920			19394	2561	15831	15854	21485;21486;21487;21488	21486					0.1115699586774781
ILPRKALM	8	Oxidation (M)	_ILPRKALM(Oxidation (M))_		ILPRKALM(1)		ILPRKALM(55)	0	0	1			REV__sp|P13202|VIE1_HCMVAImmediateearlyproteinIE1OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL123PE=1SV=1	REV__sp|P13202|VIE1_HCMVAImmediateearlyproteinIE1OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL123PE=1SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.29718017578125	2	479.29933	956.584108	-0.079368	-3.8041E-05	-3.8374	-0.0018392	-3.9167	-0.0018773	479.29735582244143	116.79	1.2501	115.43	115.04	116.29	-1.3645					65	23	3	0	0	0	0.64377	1	10905	10905		54.765	10.234	1	647920	+		19395	29399	15832	15855	21489	21489		647			0.10407885193103539
ILPRLGFTD	9	Unmodified	_ILPRLGFTD_					0	0	0		ENSG00000100665|ENST00000557004|SERPINA4	ENSG00000100665|ENST00000557004|SERPINA4	ENSG00000100665|ENST00000557004|SERPINA4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7820434570312	2	516.297842	1030.58113	0.01106	5.7103E-06	-0.97087	-0.00050126	-0.95981	-0.00049555	516.2967383652908	112.71	0.64863	111.2	110.84	111.49	-1.5111					17	12	2	0	0	0	0.027462	1	10396	10396		35.618	0	1	23300			19396	2097	15833	15856	21490	21490					0.06706333339934645
ILPRSLALI	9	Unmodified	_ILPRSLALI_					0	0	0		KIF20A|p.A427Vfs*40|1|0.19|ENSG00000112984|chr5:138184032-138184033|-/TGTTC|frameshift_variant;nc|ENSG00000112984|O95235-2|KIF20A;ENSG00000112984|ENST00000394894|KIF20A	KIF20A|p.A427Vfs*40|1|0.19|ENSG00000112984|chr5:138184032-138184033|-/TGTTC|frameshift_variant	KIF20A|p.A427Vfs*40|1|0.19|ENSG00000112984|chr5:138184032-138184033|-/TGTTC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3335876464844	2	498.334227	994.653902	3.0095	0.0014997	-3.4235	-0.001706	-0.41398	-0.0002063	498.33243610568087	134.14	2.7147	132.61	132.05	134.76	-1.5257					123	54	4	0	0	0	0.42676	1	13039	13039		49.442	0	1	1105000			19397	2941	15834	15857	21491	21491					0.15636087133361798
ILPSLLLGEG	10	Unmodified	_ILPSLLLGEG_					0	0	0			REV__ENST00000479518.1_1_13:96236855-96239862:-|nuORF	REV__ENST00000479518.1_1_13:96236855-96239862:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.273681640625	2	506.307875	1010.6012	2.0645	0.0010453	2.9018	0.0014692	4.9663	0.0025145	506.3081213631918	115.49	0.88688	115.49	115.07	115.96	0					28	18	3	0	0	0	0.027021	1	13234	13234		29.15	0	1	62486	+		19398	26439	15835	15858	21492	21492					0.09632084279928677
ILPSRLITY	9	Unmodified	_ILPSRLITY_					0	0	0			REV__nc|ENSG00000140832|Q96A59-2|MARVELD3	REV__nc|ENSG00000140832|Q96A59-2|MARVELD3	MULTI-MSMS	OvCa9_classI_Rep2	2	538.3259887695312	2	538.329142	1074.64373	-5.5921	-0.0030104	1.7538	0.0009441	-3.8384	-0.0020663	538.3299819955096	158.56	1.0599	158.33	158.09	159.15	-0.22697					66	21	5	0	0	0	0.70177	1	16125	16125		17.365	0.89182	1	327100	+		19399	28897	15836	15859	21493	21493					0.10939479408125408
ILPSVIPLVW	10	Unmodified	_ILPSVIPLVW_					0	0	0			REV__nc|ENSG998|Q9N2K0|HERV-H-ENH1	REV__nc|ENSG998|Q9N2K0|HERV-H-ENH1	MULTI-MSMS	OvCa9_classI_Rep4_	4	568.8540649414062	2	568.857535	1135.70052	-6.0827	-0.0034602	-1.2812	-0.00072885	-7.364	-0.0041891	568.856661515311	161.9	1.6548	160.28	159.93	161.59	-1.6239					133	43	5	0	0	0	0.80532	1	16054	16054		18.324	2.6826	1	804000	+		19400	29237	15837	15860	21494	21494					0.1380952696465556
ILPTPRAGL	9	Unmodified	_ILPTPRAGL_					0	0	0		ENST00000506469.5_1_6:43483813-43484666:-|nuORF;ENST00000372422.6_1_6:43483813-43484699:-|nuORF;ENST00000510102.5_1_6:43483884-43484699:-|nuORF;ENST00000490447.6_1_6:43483884-43484699:-|nuORF	ENST00000506469.5_1_6:43483813-43484666:-|nuORF	ENST00000506469.5_1_6:43483813-43484666:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	469.2947692871094	2	469.295102	936.575651	-1.0303	-0.00048351	0.48143	0.00022593	-0.54885	-0.00025757	469.2953279738589	102.78	2.1727	102.09	101.49	103.66	-0.68459					130	43	5	0	0	0	0.10363	1	9496	9496		96.19	16.739	1	1527700			19401	10980	15838	15861	21495	21495					0.10482654548115988
ILPTTLPTT	9	Unmodified	_ILPTTLPTT_					0	0	0		ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	MULTI-MSMS	OvCa9_classI_Rep2	2	478.78509521484375	2	478.786776	955.558998	-2.4635	-0.0011795	-0.48004	-0.00022984	-2.9436	-0.0014093	478.7864521794397	145.79	1.5385	145.57	144.98	146.52	-0.22696					81	30	4	0	0	0	0.52083	1	14708	14708		40.573	0	1	230950			19402	5798	15839	15862	21496	21496					0.07944108871492972
ILPVVSLFILI	11	Unmodified	_ILPVVSLFILI_					0	0	0			REV__ENSG00000145740|ENST00000396591|SLC30A5	REV__ENSG00000145740|ENST00000396591|SLC30A5	MULTI-MSMS	OvCa9_classI_Rep3	3	409.60833740234375	3	409.608937	1225.80498	1.1396	0.00046679	-3.5153	-0.0014399	-2.3757	-0.00097312	409.6074659919173	107.95	5.8573	106.76	106.27	112.13	-1.1978					409	114	4	0	0	0	0.65063	1	7766	7766		40.058	3.7405	1	1037400	+		19403	19981	15840	15863	21497	21497					0.20111228721384578
ILQARTPVL	9	Unmodified	_ILQARTPVL_					0	0	0		ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	MULTI-MSMS	OvCa9_classI_Rep2	2	505.8213806152344	2	505.821484	1009.62842	-0.26405	-0.00013356	0.17901	9.0545E-05	-0.085044	-4.3017E-05	505.8212974037825	110.2	1.3347	110.03	109.61	110.95	-0.17237					45	26	2	0	0	0	0.51865	1	10373	10373		40.778	4.3314	1	153320			19404	7185	15841	15864	21498	21498					0.1239861261092301
ILQDGRIFI	9	Unmodified	_ILQDGRIFI_					0	0	0		ENSG00000125835|ENST00000381342|SNRPB;nc|ENSG00000125835|P14678|SNRPB;ENSG00000128739|ENST00000390687|SNRPN;nc|ENSG00000128739|P63162-2|SNRPN;nc|ENSG00000125835|P14678-3|SNRPB	ENSG00000125835|ENST00000381342|SNRPB	ENSG00000125835|ENST00000381342|SNRPB	MULTI-MSMS	OvCa99_classI_Rep5	1	537.8200073242188	2	537.818941	1073.62333	1.868	0.0010046	0.50589	0.00027208	2.3739	0.0012767	537.8190237204194	108.69	0.78566	108.69	108.5	109.28	0					21	17	2	0	0	0	0.1944	1	12313	12313		77.318	5.4401	1	1357900			19405	3742	15842	15865	21499	21499					0.08946308748318188
ILQDYRKF	8	Unmodified	_ILQDYRKF_					0	0	0		tr|A0A553SJ72|A0A553SJ72_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_16215PE=4SV=1	tr|A0A553SJ72|A0A553SJ72_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_16215PE=4SV=1	tr|A0A553SJ72|A0A553SJ72_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_16215PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	541.8028564453125	2	541.803291	1081.59203	-0.30564	-0.0001656	2.2815	0.0012361	1.9759	0.0010705	541.8044569531069	79.417	1.973	77.678	76.999	78.972	-1.7398					115	38	4	0	0	0	0.68714	1	6643	6643		45.952	7.1458	1	314360			19406	33468	15843	15866	21500	21500					0.054497357142281544
ILQEEIVKMK	10	Unmodified	_ILQEEIVKMK_					0	0	0			REV__tr|A0A553SUB9|A0A553SUB9_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_06725PE=4SV=1	REV__tr|A0A553SUB9|A0A553SUB9_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_06725PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	615.8604125976562	2	615.859949	1229.70534	1.8687	0.0011509	-1.7776	-0.0010948	0.091122	5.6118E-05	615.8586782375912	136.29	0.56528	136.29	136.07	136.63	0					24	11	3	0	0	0	0.48398	1	15890	15890		56.434	6.8977	1	180030	+		19407	31061	15844	15867	21501	21501					0.0996804304509169
ILQEREYRL	9	Unmodified	_ILQEREYRL_					0	0	0		nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;SMARCA4|p.E664Gfs*44|1|0.16|ENSG00000127616|chr19:11003386-11003387|-/GTCAGGAGATCGAGACTGTCTTGGCTAACAC|frameshift_variant;SMARCA4|p.I1250Tfs*41|1|0.04|ENSG00000127616|chr19:11033492-11033492|T/-|frameshift_variant;SMARCA4-CARM1|1|fusion;SMARCA4-C19orf38|1|fusion	nc|ENSG00000080503|P51531-2|SMARCA2;SMARCA4-C19orf38|1|fusion	nc|ENSG00000080503|P51531-2|SMARCA2	MULTI-MSMS	OvCa99_classI_Rep5	1	610.3444213867188	2	610.343312	1218.67207	-0.27938	-0.00017052	-0.0011769	-7.1828E-07	-0.28056	-0.00017124	610.3432542507906	66.374	1.3524	66.374	66.096	67.448	0					73	33	5	0	0	0	0.18887	1	6168	6168		71.877	24.22	1	11834000			19408	1636;32840	15845	15868	21502	21502					0.07148177317412774
ILQEREYRL	9	Unmodified	_ILQEREYRL_					0	0	0		nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;SMARCA4|p.E664Gfs*44|1|0.16|ENSG00000127616|chr19:11003386-11003387|-/GTCAGGAGATCGAGACTGTCTTGGCTAACAC|frameshift_variant;SMARCA4|p.I1250Tfs*41|1|0.04|ENSG00000127616|chr19:11033492-11033492|T/-|frameshift_variant;SMARCA4-CARM1|1|fusion;SMARCA4-C19orf38|1|fusion	nc|ENSG00000080503|P51531-2|SMARCA2;SMARCA4-C19orf38|1|fusion	nc|ENSG00000080503|P51531-2|SMARCA2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	610.343312	1218.67207	-1.1189	-0.00068292	0.065194	3.9791E-05	-1.0537	-0.00064313	610.3434163910259	69.141	1.0952	66.521	66.118	67.213	-2.6203	0.0026464	0.00013969	NaN	71.877	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101300			19409	1636;32840	15845	15868							0.07148177317412774
ILQEREYRL	9	Unmodified	_ILQEREYRL_					0	0	0		nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;SMARCA4|p.E664Gfs*44|1|0.16|ENSG00000127616|chr19:11003386-11003387|-/GTCAGGAGATCGAGACTGTCTTGGCTAACAC|frameshift_variant;SMARCA4|p.I1250Tfs*41|1|0.04|ENSG00000127616|chr19:11033492-11033492|T/-|frameshift_variant;SMARCA4-CARM1|1|fusion;SMARCA4-C19orf38|1|fusion	nc|ENSG00000080503|P51531-2|SMARCA2;SMARCA4-C19orf38|1|fusion	nc|ENSG00000080503|P51531-2|SMARCA2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	610.343312	1218.67207	-0.34201	-0.00020875	-0.32513	-0.00019844	-0.66714	-0.00040719	610.3431879613579	70.141	1.1177	66.66	66.297	67.415	-3.4812	0.14124	-0.00033677	NaN	71.877	50	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129250			19410	1636;32840	15845	15868							0.07148177317412774
ILQERIPWV	9	Unmodified	_ILQERIPWV_					0	0	0		ENSG00000096968|ENST00000381652|JAK2;JAK2|p.Y913Vfs*12|1|0.15|ENSG00000096968|chr9:5089834-5089835|-/A|frameshift_variant	ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.81494140625	2	577.340041	1152.66553	2.4798	0.0014317	0.98473	0.00056852	3.4645	0.0020002	577.3407399089099	116.03	0.68984	116.03	115.73	116.42	0					30	14	3	0	0	0	0.027461	1	13269	13269		49.442	6.5773	1	494860			19411	1952	15846	15869	21503	21503					0.09530284156699054
ILQGKFGQLF	10	Unmodified	_ILQGKFGQLF_					0	0	0			REV__ENST00000469698.5_1_17:39981777-39991902:-|nuORF	REV__ENST00000469698.5_1_17:39981777-39991902:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.27880859375	2	575.834591	1149.65463	1.5424	0.0008882	1.3617	0.00078411	2.9041	0.0016723	575.8355852664134	126.49	0.18848	126.49	126.37	126.56	0					5	3	2	0	0	0	0.027147	1	14626	14626		21.96	11.094	1	24258	+		19412	19757	15847	15870	21504	21504					0.08578881782409553
ILQIGIKDIS	10	Unmodified	_ILQIGIKDIS_					0	0	0		ENSG00000138109|ENST00000260682|CYP2C9;nc|ENSG00000138109|P11712-2|CYP2C9	ENSG00000138109|ENST00000260682|CYP2C9	ENSG00000138109|ENST00000260682|CYP2C9	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.8179931640625	2	550.339707	1098.66486	2.5483	0.0014024	-1.2376	-0.00068111	1.3106	0.0007213	550.3387223741015	89.376	0.24106	89.376	89.275	89.516	0					10	5	3	0	0	0	0.026915	1	9557	9557		35.618	0	1	173150			19413	4660	15848	15871	21505	21505					0.1194744471699778
ILQKLCHIL	9	Unmodified	_ILQKLCHIL_					0	0	0			REV__ENSG00000136546|ENST00000643258|SCN7A	REV__ENSG00000136546|ENST00000643258|SCN7A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.3148193359375	2	540.833537	1079.65252	2.3188	0.0012541	4.0858	0.0022097	6.4045	0.0034638	541.3367282103864	134.93	0.19763	133.39	133.21	133.41	-1.5437					5	3	2	0	0	0	0.027462	1	13056	13056		42.474	14.22	1	6302.6	+		19414	19393	15849	15872	21506	21506					0.11588129772940192
ILQKLIKPP	9	Unmodified	_ILQKLIKPP_					0	0	0		UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.8370361328125	2	525.357702	1048.70085	1.6172	0.00084961	-1.2638	-0.00066394	0.35341	0.00018566	525.3566931403604	137.03	0.63837	135.49	135.27	135.91	-1.5437					16	12	2	0	0	0	0.027462	1	13321	13321		12.959	9.5492	1	12621			19415	3833	15850	15873	21507	21507					0.17844946684499519
ILQKPIYTI	9	Unmodified	_ILQKPIYTI_					0	0	0		ENSG00000203733|ENST00000450456|GJE1	ENSG00000203733|ENST00000450456|GJE1	ENSG00000203733|ENST00000450456|GJE1	MULTI-MSMS	OvCa99_classI_Rep5	1	544.8406982421875	2	544.839342	1087.66413	1.7662	0.00096229	0.45792	0.00024949	2.2241	0.0012118	544.8394238194511	120.11	0.47868	120.11	119.88	120.36	0					26	11	3	0	0	0	0.1804	1	13807	13807		79.713	2.395	1	1036400			19416	8928	15851	15874	21508	21508					0.12380650067939314
ILQKQKKV	8	Unmodified	_ILQKQKKV_					0	0	0		ENSG00000005436|ENST00000321027|GCFC2;nc|ENSG00000005436|P16383-2|GCFC2	ENSG00000005436|ENST00000321027|GCFC2	ENSG00000005436|ENST00000321027|GCFC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.55865478515625	2	492.831852	983.649151	-0.74114	-0.00036526	1.063	0.00052386	0.32183	0.00015861	492.83225478013304	37.935	0.72505	37.935	37.761	38.486	0					44	15	4	0	0	0	0.028476	1	2111	2111		47.916	10.887	1	771520			19417	854	15852	15875	21509	21509					0.1566720299060762
ILQKVKEEF	9	Unmodified	_ILQKVKEEF_					0	0	0			REV__nc|ENSG00000143569|Q14157-4|UBAP2L	REV__nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.375244140625	2	567.331882	1132.64921	-0.076526	-4.3416E-05	4.4136	0.002504	4.337	0.0024605	567.3357975496936	64.51	0.45589	64.51	64.294	64.75	0					13	10	2	0	0	0	0.027295	1	5855	5855		74.255	5.4682	1	207740	+		19418	19853	15853	15876	21510	21510					0.0881915819995811
ILQLEKPLN	9	Unmodified	_ILQLEKPLN_					0	0	0		ENST00000524297.5_1_5:163781227-163969217:+|nuORF	ENST00000524297.5_1_5:163781227-163969217:+|nuORF	ENST00000524297.5_1_5:163781227-163969217:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.3430786132812	2	534.326599	1066.63865	2.6394	0.0014103	-1.0466	-0.00055921	1.5928	0.00085109	534.3261357162622	107.98	0.46554	107.98	107.77	108.24	0					14	10	2	0	0	0	0.027461	1	12218	12218		58.782	19.529	1	265680			19419	13166	15854	15877	21511	21511					0.10799175545503203
ILQLEKPLN	9	Unmodified	_ILQLEKPLN_					0	0	0		ENST00000524297.5_1_5:163781227-163969217:+|nuORF	ENST00000524297.5_1_5:163781227-163969217:+|nuORF	ENST00000524297.5_1_5:163781227-163969217:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	534.326599	1066.63865	-0.81787	-0.00043701	0.48276	0.00025795	-0.33512	-0.00017906	534.3267673490993	107.89	0.88103	107.67	107.39	108.27	-0.22498	-0.072881	0.00044559	NaN	58.782	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45481			19420	13166	15854	15877							0.10799175545503203
ILQLEKPLN	9	Unmodified	_ILQLEKPLN_					0	0	0		ENST00000524297.5_1_5:163781227-163969217:+|nuORF	ENST00000524297.5_1_5:163781227-163969217:+|nuORF	ENST00000524297.5_1_5:163781227-163969217:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	534.326599	1066.63865	0.65049	0.00034757	-1.3434	-0.00071784	-0.69295	-0.00037026	534.3257505495527	108.86	0.97626	107.66	107.27	108.24	-1.1978	-0.080977	-0.001506	NaN	58.782	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44594			19421	13166	15854	15877							0.10799175545503203
ILQLEKPLN	9	Unmodified	_ILQLEKPLN_					0	0	0		ENST00000524297.5_1_5:163781227-163969217:+|nuORF	ENST00000524297.5_1_5:163781227-163969217:+|nuORF	ENST00000524297.5_1_5:163781227-163969217:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	534.326599	1066.63865	-1.0165	-0.00054313	0.66155	0.00035348	-0.35492	-0.00018964	534.3268885185697	109.38	1.2521	107.65	107.38	108.63	-1.7256	-0.086942	0.00063665	NaN	58.782	31	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60506			19422	13166	15854	15877							0.10799175545503203
ILQLKKDST	9	Unmodified	_ILQLKKDST_					0	0	0			REV__ENSG00000134308|ENST00000238081|YWHAQ	REV__ENSG00000134308|ENST00000238081|YWHAQ	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.3364868164062	2	523.316232	1044.61791	-0.22291	-0.00011665	-0.69449	-0.00036344	-0.9174	-0.00048009	523.3157227149646	115.71	1.4426	114.31	113.57	115.01	-1.3977					58	28	5	0	0	0	0.027462	1	10775	10775		20.947	0	1	112040	+		19423	19192	15855	15878	21512	21512					0.09738585165860059
ILQLSSSLPLQ	11	Unmodified	_ILQLSSSLPLQ_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	OvCa99_classI_Rep5	1	400.2406921386719	3	400.239573	1197.69689	1.0941	0.0004379	0.40046	0.00016028	1.4946	0.00059818	400.2396672711276	23.911	0.68874	23.911	23.647	24.336	0					35	13	4	0	0	0	0.70032	1	377	377		29.551	0.38069	1	577660			19424	1754	15856	15879	21513	21513					0.10594812400131559
ILQNGLVTL	9	Unmodified	_ILQNGLVTL_					0	0	0			REV__ENSG00000178358|ENST00000317834|OR2D3	REV__ENSG00000178358|ENST00000317834|OR2D3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.2898864746094	2	485.800217	969.585882	-0.030186	-1.4664E-05	-0.70856	-0.00034422	-0.73874	-0.00035888	485.79985956214176	96.095	2.1182	93.669	93.304	95.423	-2.4256					64	41	3	0	0	0	0.027417	1	8607	8607		29.15	0	1	293440	+		19425	22056	15857	15880	21514	21514					0.09987217482728283
ILQNKIDLV	9	Unmodified	_ILQNKIDLV_					0	0	0		ENSG00000130741|ENST00000253039|EIF2S3;ENSG00000180574|ENST00000538173|EIF2S3B;nc|ENSG00000180574|Q2VIR3-2|EIF2S3B;ENST00000487075.1_1_X:24073085-24080702:+|nuORF	ENSG00000130741|ENST00000253039|EIF2S3	ENSG00000130741|ENST00000253039|EIF2S3	MULTI-MSMS	OvCa99_classI_Rep5	1	528.3279418945312	2	528.326599	1054.63865	1.8443	0.00097437	0.22709	0.00011998	2.0713	0.0010943	528.3266119065299	92.989	0.45905	92.989	92.762	93.221	0					26	10	3	0	0	0	0.03923	1	10063	10063		127.46	8.7186	1	4370100			19426	4008	15858	15881	21515	21515					0.11351175545519254
ILQPKVFLN	9	Unmodified	_ILQPKVFLN_					0	0	0			REV__tr|A0A553SLR2|A0A553SLR2_NIACIalpha-L-rhamnosidaseOS=NialliacirculansOX=1397GN=CEQ21_21125PE=4SV=1	REV__tr|A0A553SLR2|A0A553SLR2_NIACIalpha-L-rhamnosidaseOS=NialliacirculansOX=1397GN=CEQ21_21125PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.343505859375	2	536.331685	1070.64882	2.1473	0.0011517	-4.334	-0.0023245	-2.1867	-0.0011728	536.3295773468374	80.671	0.42772	80.671	80.443	80.871	0					11	9	2	0	0	0	0.027462	1	8268	8268		12.207	0	1	75861	+		19427	30256	15859	15882	21516	21516					0.11631783270763663
ILQQLEIEF	9	Unmodified	_ILQQLEIEF_					0	0	0		ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000485101.5_1_3:186502728-186502902:+|nuORF;ENST00000465032.5_1_3:186501384-186502902:+|nuORF;ENST00000465267.5_1_3:186501384-186502902:+|nuORF	ENSG00000156976|ENST00000323963|EIF4A2	ENSG00000156976|ENST00000323963|EIF4A2	MULTI-MSMS	OvCa9_classI_Rep2	2	566.8163452148438	2	566.816064	1131.61758	-0.034625	-1.9626E-05	-0.39831	-0.00022577	-0.43294	-0.0002454	566.8158254764281	108.92	2.4235	108.69	108.32	110.75	-0.22498					109	48	5	0	0	0	0.61208	1	10252	10252		30.504	0.18592	1	1117900			19428	5867	15860	15883	21517	21517					0.057031654459933634
ILQRVILP	8	Unmodified	_ILQRVILP_					0	0	0		tr|A0A553SM32|A0A553SM32_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_21770PE=3SV=1	tr|A0A553SM32|A0A553SM32_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_21770PE=3SV=1	tr|A0A553SM32|A0A553SM32_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_21770PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	476.79473876953125	2	476.32112	950.627687	-0.029509	-1.4056E-05	-0.72232	-0.00034406	-0.75183	-0.00035811	476.3209307601916	110.44	1.5302	110.27	109.91	111.44	-0.17236					60	30	4	0	0	0	0.028476	1	10421	10421		28.254	9.9299	1	46418			19429	33793	15861	15884	21518	21518					0.1503981796190601
ILQSDAVCCSM	11	Unmodified	_ILQSDAVCCSM_					0	0	0			REV__tr|A0A7D6VRA4|A0A7D6VRA4_9CLOTTIGR03943familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00705PE=4SV=1	REV__tr|A0A7D6VRA4|A0A7D6VRA4_9CLOTTIGR03943familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00705PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.4006958007812	2	585.253602	1168.49265	1.8691	0.0010939	0.66182	0.00038733	2.5309	0.0014812	585.2539131109438	117.96	0.50591	117.96	117.7	118.2	0					19	10	2	0	0	0	0.025332	1	13536	13536		49.536	5.1589	1	193050	+		19430	31399	15862	15885	21519	21519					-0.08485534348710644
ILQSRPIK	8	Unmodified	_ILQSRPIK_					0	0	0			REV__ENSG00000137473|ENST00000325106|TTC29	REV__ENSG00000137473|ENST00000325106|TTC29	MULTI-MSMS	OvCa9_classI_Rep2	2	477.8113708496094	2	477.808377	953.6022	0.21295	0.00010175	3.7043	0.0017699	3.9172	0.0018717	477.8099772174769	124.62	1.9274	124.39	124.03	125.95	-0.23193					69	38	3	0	0	0	0.56195	1	12161	12161		71.296	5.4925	1	226270	+		19431	19454	15863	15886	21520	21520					0.12354343439460536
ILQTKLYTL	9	Unmodified	_ILQTKLYTL_					0	0	0		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;TSC2|p.R799Afs*25|1|0.29|ENSG00000103197|chr16:2074238-2074253|CCGCTGTGCCAGCCAG/-|frameshift_variant	nc|ENSG00000103197|P49815-7|TSC2	nc|ENSG00000103197|P49815-7|TSC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.2929077148438	2	546.8368	1091.65905	-0.94782	-0.0005183	-0.86117	-0.00047092	-1.809	-0.00098922	546.836629976539	101.33	0.6281	99.068	98.929	99.557	-2.2665					16	12	2	0	0	0	0.027462	1	9102	9102		40.778	14.085	1	26127			19432	2293	15864	15887	21521	21521					0.11688346205323796
ILQTNNDPGL	10	Unmodified	_ILQTNNDPGL_					0	0	0		nc|ENSG00000087995|Q96IZ6-2|METTL2A;nc|ENSG00000165055|Q6P1Q9-2|METTL2B;ENST00000482555.5_1_7:128117100-128141967:+|nuORF;ENST00000333483.14_1_17:60501544-60526087:+|nuORF;ENSG00000165055|ENST00000262432|METTL2B;ENSG00000087995|ENST00000311506|METTL2A	nc|ENSG00000087995|Q96IZ6-2|METTL2A	nc|ENSG00000087995|Q96IZ6-2|METTL2A	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.2854614257812	2	542.785296	1083.55604	-0.46571	-0.00025278	1.4979	0.00081303	1.0322	0.00056024	542.7861082995104	53.853	1.5893	53.853	53.475	55.064	0					64	37	2	0	0	0	0.026994	1	4297	4297		19.104	0	1	709120			19433	1780	15865	15888	21522	21522					0.01760233746722406
ILQVRDAP	8	Unmodified	_ILQVRDAP_					0	0	0			REV__HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|27|1|sense	REV__HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|27|1|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	456.2696533203125	2	456.269084	910.523616	-0.16414	-7.4894E-05	-0.36701	-0.00016746	-0.53116	-0.00024235	456.26891948551145	40.689	2.0207	40.689	40.432	42.453	0					121	45	5	0	0	0	0.62934	1	2582	2582		57.811	4.4598	1	14812000	+		19434	28231	15866	15889	21523	21523					0.06477491134364755
ILQVSIPSL	9	Unmodified	_ILQVSIPSL_					0	0	0		nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-3|PPFIBP1	nc|ENSG00000110841|Q86W92-4|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1	nc|ENSG00000110841|Q86W92-4|PPFIBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	485.303466796875	2	485.302593	968.590633	1.1417	0.00055409	0.93076	0.0004517	2.0725	0.0010058	485.3029630618252	143.24	0.49335	143.24	143.02	143.51	0					20	9	3	0	0	0	0.3076	1	16739	16739		62.107	12.666	1	42140			19435	2795;14956	15867	15890	21524	21524					0.10508101625475774
ILRAAIILL	9	Unmodified	_ILRAAIILL_					0	0	0		tr|A0A553SMK2|A0A553SMK2_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_22725PE=4SV=1	tr|A0A553SMK2|A0A553SMK2_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_22725PE=4SV=1	tr|A0A553SMK2|A0A553SMK2_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_22725PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.3336181640625	2	498.35242	994.690287	1.2672	0.00063152	1.7908	0.00089247	3.0581	0.001524	498.3541807494434	124.74	0.5224	123.68	123.43	123.95	-1.0519					16	9	2	0	0	0	0.027392	1	9682	9682		63.306	5.495	1	42432			19436	33841	15868	15891	21525	21525					0.19272964030074036
ILRAIPKGIRD	11	Unmodified	_ILRAIPKGIRD_					0	0	0		ENST00000579014.5_1_18:6942080-7042306:-|nuORF;ENSG00000101680|ENST00000389658|LAMA1	ENST00000579014.5_1_18:6942080-7042306:-|nuORF	ENST00000579014.5_1_18:6942080-7042306:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	626.371826171875	2	626.398422	1250.78229	0.76785	0.00048098	3.3648	0.0021077	4.1327	0.0025887	626.9009497544946	159	0.24582	159	158.89	159.14	0					5	4	2	0	0	0	0.026125	1	18648	18648		21.686	0	1	28608			19437	2196	15869	15892	21526	21526					0.16693022376466615
ILRFENLDIH	10	Unmodified	_ILRFENLDIH_					0	0	0		ENST00000608895.1_6:122907084-122907153:+|nuORF;ENST00000392491.2_6:122907084-122996246:+|nuORF	ENST00000608895.1_6:122907084-122907153:+|nuORF	ENST00000608895.1_6:122907084-122907153:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	424.59466552734375	3	423.903183	1268.68772	1.3222	0.0005605	1.1518	0.00048827	2.4741	0.0010488	423.9044007277863	68.964	0.24868	66.15	66.063	66.312	-2.8143					5	4	2	0	0	0	0.02717	1	3050	3050		30.318	6.795	1	5526.7			19438	11225	15870	15893	21527	21527					0.06412463834476512
ILRFLRPERIH	11	Unmodified	_ILRFLRPERIH_					0	0	0			REV__ENSG00000143845|ENST00000367202|ETNK2	REV__ENSG00000143845|ENST00000367202|ETNK2	MULTI-SECPEP	OvCa9_classI_Rep3	3	483.8265075683594	3	483.964889	1448.87284	-0.30677	-0.00014846	-1.2792	-0.00061908	-1.5859	-0.00076754	483.9641914469819	73.332	0.44627	70.845	70.628	71.074	-2.4873					16	8	3	0	0	0	0.026174	1	3540	3540		22.562	8.4756	1	11267	+		19439	19871	15871	15894	21528	21528					0.16635491424744941
ILRGELIV	8	Unmodified	_ILRGELIV_					0	0	0			REV__tr|A0A553SS28|A0A553SS28_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02150PE=4SV=1	REV__tr|A0A553SS28|A0A553SS28_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02150PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	456.7979736328125	2	456.797478	911.580402	0.29232	0.00013353	-0.61394	-0.00028045	-0.32162	-0.00014691	456.7971214119819	103.69	3.5724	103.12	102.73	106.3	-0.57639					168	71	3	0	0	0	0.38598	2	9568	9568;9574		90.777	2.6769	1	1420000	+		19440	30794	15872	15895	21529;21530	21529					0.1210753869089558
ILRGHCGPV	9	Unmodified	_ILRGHCGPV_					0	0	0		ENSG00000135801|ENST00000258281|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	ENSG00000135801|ENST00000258281|TAF5L	MULTI-MSMS	OvCa99_classI_Rep5	1	476.2653503417969	2	476.263279	950.512005	0.97238	0.00046311	2.8217	0.0013439	3.7941	0.001807	476.26341343233	141.9	1.7317	141.9	141.39	143.12	0					71	34	3	0	0	0	0.70177	1	16590	16590		17.365	0	1	70847			19441	4416	15873	15896	21531	21531					0.03476970839403748
ILRGKHKP	8	Unmodified	_ILRGKHKP_					0	0	0		tr|A0A553SH82|A0A553SH82_NIACILargeribosomalsubunitproteinuL13OS=NialliacirculansOX=1397GN=rplMPE=3SV=1	tr|A0A553SH82|A0A553SH82_NIACILargeribosomalsubunitproteinuL13OS=NialliacirculansOX=1397GN=rplMPE=3SV=1	tr|A0A553SH82|A0A553SH82_NIACILargeribosomalsubunitproteinuL13OS=NialliacirculansOX=1397GN=rplMPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.2901306152344	2	474.808711	947.602869	1.4504	0.00068869	-2.3441	-0.001113	-0.89368	-0.00042433	474.8070061097449	97.479	0.35693	95.101	94.859	95.216	-2.3786					8	6	2	0	0	0	0.028476	1	8631	8631		35.201	6.9464	1	5686.4			19442	33247	15874	15897	21532	21532					0.12697182879162483
ILRGPGPLL	9	Unmodified	_ILRGPGPLL_					0	0	0		ENST00000394275.6_1_15:91477270-91478348:+|nuORF	ENST00000394275.6_1_15:91477270-91478348:+|nuORF	ENST00000394275.6_1_15:91477270-91478348:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	468.30474853515625	2	468.30547	934.596387	-0.10884	-5.097E-05	-0.26151	-0.00012247	-0.37035	-0.00017344	468.3052924042457	103.42	2.4994	101.22	100.52	103.02	-2.1981					124	47	5	0	0	0	0.58665	1	9381	9381		33.516	0	1	1560600			19443	11262	15875	15898	21533	21533					0.12647244927802603
ILRGPMCF	8	Unmodified	_ILRGPMCF_					0	0	0		ENST00000428411.5_1_1:113500251-113503167:+|nuORF	ENST00000428411.5_1_1:113500251-113503167:+|nuORF	ENST00000428411.5_1_1:113500251-113503167:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	468.7427673339844	2	468.743334	935.472114	2.048	0.00095999	-0.62344	-0.00029223	1.4246	0.00066776	468.7428291880413	122.36	0.68665	122.36	122.08	122.77	0					24	14	2	0	0	0	0.68312	1	14110	14110		46.766	5.9883	1	276900			19444	11772	15876	15899	21534	21534					0.0017970784447243204
ILRGTPLLL	9	Unmodified	_ILRGTPLLL_					0	0	0		tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.33392333984375	2	498.334227	994.653902	-0.32382	-0.00016137	-0.21052	-0.00010491	-0.53434	-0.00026628	498.334091062265	122.71	0.88941	122.49	122.12	123.01	-0.21803					72	17	5	0	0	0	0.53483	1	11931	11931		39.253	3.6345	1	2870900			19445	34426	15877	15900	21535	21535					0.15636087133384535
ILRGTPLLL	9	Unmodified	_ILRGTPLLL_					0	0	0		tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3335876464844	2	498.334227	994.653902	0.034655	1.727E-05	-0.51496	-0.00025662	-0.48031	-0.00023935	498.3339335091273	123.54	3.2541	123.31	122.99	126.25	-0.23193					175	65	5	0	0	0	0.31747	1	11958	11958		60.972	5.4677	1	3004600			19446	34426	15877	15900	21536	21536					0.15636087133384535
ILRGTPLLL	9	Unmodified	_ILRGTPLLL_					0	0	0		tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3337097167969	2	498.334227	994.653902	0.2425	0.00012085	-0.5271	-0.00026267	-0.2846	-0.00014182	498.33387359588454	132.52	1.8753	132.29	131.93	133.81	-0.22696					110	37	5	0	0	0	0.27001	1	13084	13084		66.429	2.222	1	948910			19447	34426	15877	15900	21537	21537					0.15636087133384535
ILRGTPLLL	9	Unmodified	_ILRGTPLLL_					0	0	0		tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.335205078125	2	498.334227	994.653902	1.2058	0.00060088	-1.8531	-0.00092347	-0.64734	-0.00032259	498.3333151769235	123.76	0.97957	122.73	122.31	123.29	-1.0377					75	18	5	0	0	0	0.27001	2	9562	9562;9624		66.429	7.6205	1	3991100			19448	34426	15877	15900	21538;21539	21538					0.15636087133384535
ILRGTPLLL	9	Unmodified	_ILRGTPLLL_					0	0	0		tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3332214355469	2	498.334227	994.653902	1.2643	0.00063007	-1.8659	-0.00092985	-0.60157	-0.00029978	498.3332884380841	124.71	3.4398	123.66	123.27	126.71	-1.0519					179	65	5	0	0	0	0.56889	1	9643	9643		35.618	1.4457	1	3929400			19449	34426	15877	15900	21540	21540					0.15636087133384535
ILRGTPLLL	9	Unmodified	_ILRGTPLLL_					0	0	0		tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3333435058594	2	498.334227	994.653902	-0.6989	-0.00034829	0.47295	0.00023569	-0.22596	-0.0001126	498.33435878229506	133.81	2.0717	132.69	132.27	134.34	-1.1226					102	41	4	0	0	0	0.42676	2	10830	10824;10830		49.442	6.7194	1	981140			19450	34426	15877	15900	21541;21542	21542					0.15636087133384535
ILRGTPLLL	9	Unmodified	_ILRGTPLLL_					0	0	0		tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.33428955078125	2	498.334227	994.653902	-0.9719	-0.00048433	0.35815	0.00017848	-0.61375	-0.00030585	498.3344016114543	124.22	1.0633	122.83	122.32	123.39	-1.3908					81	20	5	0	0	0	0.40667	2	11772	11772;11784		51.335	2.2177	1	4028000			19451	34426	15877	15900	21543;21544	21543					0.15636087133384535
ILRGTPLLL	9	Unmodified	_ILRGTPLLL_					0	0	0		tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.33062744140625	2	498.334227	994.653902	1.9139	0.00095378	-2.3002	-0.0011463	-0.38626	-0.00019248	498.33299664402506	137.15	1.8718	135.61	134.84	136.71	-1.5437					88	39	4	0	0	0	0.38529	1	13296	13296		53.351	2.016	1	198330			19452	34426	15877	15900	21545	21545					0.15636087133384535
ILRGVEPIL	9	Unmodified	_ILRGVEPIL_					0	0	0		tr|A0A7D6VPU3|A0A7D6VPU3_9CLOTYibE/FfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18165PE=4SV=1	tr|A0A7D6VPU3|A0A7D6VPU3_9CLOTYibE/FfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18165PE=4SV=1	tr|A0A7D6VPU3|A0A7D6VPU3_9CLOTYibE/FfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18165PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.3413391113281	2	505.32386	1008.63317	-0.92096	-0.00046539	0.77626	0.00039226	-0.1447	-7.3122E-05	505.324146903525	133.57	1.7735	132.45	132.07	133.85	-1.1247					81	35	4	0	0	0	0.027441	1	10898	10898		58.782	19.529	1	225280			19453	34799	15878	15901	21546	21546					0.12919496753693238
ILRILRLPE	9	Unmodified	_ILRILRLPE_					0	0	0		nc|ENSG00000164398|Q9UKU0-2|ACSL6;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6;nc|ENSG00000164398|Q9UKU0-7|ACSL6;nc|ENSG00000164398|Q9UKU0-5|ACSL6;nc|ENSG00000164398|Q9UKU0|ACSL6;nc|ENSG00000164398|Q9UKU0-9|ACSL6;nc|ENSG00000164398|Q9UKU0-6|ACSL6;ENSG00000164398|ENST00000651883|ACSL6;ENST00000477640.1_1_5:131329039-131347827:-|nuORF	nc|ENSG00000164398|Q9UKU0-2|ACSL6	nc|ENSG00000164398|Q9UKU0-2|ACSL6	MULTI-MSMS	OvCa9_classI_Rep2	2	561.8705444335938	2	561.871508	1121.72846	-0.013452	-7.558E-06	-0.52057	-0.0002925	-0.53403	-0.00030005	561.8710639589401	105.13	1.988	104.7	104.41	106.39	-0.43642					96	39	4	0	0	0	0.38969	1	9757	9757		52.937	0	1	372210			19454	15145	15879	15902	21547	21547					0.17246849944717724
ILRINTIDLP	10	Unmodified	_ILRINTIDLP_					0	0	0		tr|A0A7D6ZU92|A0A7D6ZU92_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23235PE=4SV=1	tr|A0A7D6ZU92|A0A7D6ZU92_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23235PE=4SV=1	tr|A0A7D6ZU92|A0A7D6ZU92_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23235PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3558959960938	2	584.358431	1166.70231	-2.312	-0.0013511	-1.149	-0.00067141	-3.461	-0.0020225	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.72319	1	14670	14670		27.882	0	1	180810			19455	35771	15880	15903	21548	21548					0.1256253598260173
ILRITVPYT	9	Unmodified	_ILRITVPYT_					0	0	0		tr|A0A7D6ZY59|A0A7D6ZY59_9CLOT[FeFe]hydrogenaseH-clusterradicalSAMmaturaseHydGOS=ClostridiumintestinaleOX=36845GN=hydGPE=4SV=1	tr|A0A7D6ZY59|A0A7D6ZY59_9CLOT[FeFe]hydrogenaseH-clusterradicalSAMmaturaseHydGOS=ClostridiumintestinaleOX=36845GN=hydGPE=4SV=1	tr|A0A7D6ZY59|A0A7D6ZY59_9CLOT[FeFe]hydrogenaseH-clusterradicalSAMmaturaseHydGOS=ClostridiumintestinaleOX=36845GN=hydGPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	538.32666015625	2	538.329142	1074.64373	-5.6218	-0.0030264	1.9414	0.0010451	-3.6804	-0.0019813	538.3300395836094	158.87	1.4268	157.61	157.3	158.73	-1.267					79	27	5	0	0	0	0.55588	1	13726	13726		37.159	6.6555	1	528870			19456	35909	15881	15904	21549	21549					0.1093947940810267
ILRIVGELE	9	Unmodified	_ILRIVGELE_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242169444-242174670:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.8125610351562	2	521.318774	1040.623	1.804	0.00094045	-0.37881	-0.00019748	1.4252	0.00074297	521.3185905593239	91.802	0.67799	91.802	91.582	92.26	0					28	15	3	0	0	0	0.027462	1	9959	9959		37.159	0	1	1111700			19457	3119	15882	15905	21550	21550					0.10430889028452839
ILRKAVHKI	9	Unmodified	_ILRKAVHKI_					0	0	0		ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	MULTI-MSMS	OvCa99_classI_Rep5	1	539.3663330078125	2	539.366393	1076.71823	-0.22408	-0.00012086	-0.11039	-5.9541E-05	-0.33447	-0.0001804	539.3662430537887	33.327	0.68822	33.327	33.136	33.824	0					35	13	4	0	0	0	0.29717	1	1522	1522		63.306	9.9548	1	403740			19458	3783	15883	15906	21551	21551					0.18294287010166954
ILRKDPEI	8	Unmodified	_ILRKDPEI_					0	0	0		USH2A|p.Y4273Cfs*19|1|0.36|ENSG00000042781|chr1:215675092-215675093|AT/-|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A;USH2A|p.A4046Dfs*53|1|0.04|ENSG00000042781|chr1:215680306-215680307|-/T|frameshift_variant;USH2A|p.F2516Rfs*28|1|0.25|ENSG00000042781|chr1:215900123-215900124|-/AAGGTTATTGTCACTAAACAACAAGTAAATAAGGGAGGCTCATTTCT|frameshift_variant	USH2A|p.Y4273Cfs*19|1|0.36|ENSG00000042781|chr1:215675092-215675093|AT/-|frameshift_variant	USH2A|p.Y4273Cfs*19|1|0.36|ENSG00000042781|chr1:215675092-215675093|AT/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	492.3004150390625	2	492.297842	982.581131	2.325	0.0011446	-0.23168	-0.00011405	2.0934	0.0010306	492.2976184769705	89.131	1.174	89.131	88.803	89.977	0					75	28	4	0	0	0	0.61758	1	9536	9536		60.294	5.5293	1	10370000			19459	1126	15884	15907	21552	21552					0.08914333339930636
ILRKKRVLL	9	Unmodified	_ILRKKRVLL_					0	0	0			REV__nc|ENSG00000050130|Q9P055-2|JKAMP	REV__nc|ENSG00000050130|Q9P055-2|JKAMP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	569.8345336914062	2	569.910968	1137.80738	-0.85804	-0.000489	-0.059598	-3.3966E-05	-0.91763	-0.00052297	569.9115458351928	100.12	0.15062	97.79	97.717	97.867	-2.3253					4	2	2	0	0	0	0.027462	1	8942	8942		3.9852	0	1	6607	+		19460	16683	15885	15908	21553	21553					0.24399121969690896
ILRKLHQLLL	10	Unmodified	_ILRKLHQLLL_					0	0	0			REV__UBE2Q1|p.I152L|1|0.05|ENSG00000160714|chr1:154555511-154555511|T/G|missense_variant	REV__UBE2Q1|p.I152L|1|0.05|ENSG00000160714|chr1:154555511-154555511|T/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	623.917724609375	2	623.921532	1245.82851	-6.0106	-0.0037501	-1.088	-0.00067883	-7.0986	-0.004429	623.9206048037533	164.09	0.18394	162.69	162.59	162.78	-1.4083					12	5	3	0	0	0	0.93972	1	14333	14333		3.6843	0	1	154230	+		19461	32744	15886	15909	21554	21554					0.215430872785646
ILRLQEANSL	10	Unmodified	_ILRLQEANSL_					0	0	0			REV__tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	REV__tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.8121948242188	2	578.837862	1155.66117	1.1268	0.00065222	1.6031	0.00092793	2.7299	0.0015802	578.838467535401	83.614	0.92616	83.614	83.335	84.261	0					34	21	3	0	0	0	0.026968	1	8794	8794		36.447	14.761	1	838390	+		19462	31876	15887	15910	21555	21555					0.08956774943112578
ILRLQEANSL	10	Unmodified	_ILRLQEANSL_					0	0	0			REV__tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	REV__tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	578.837862	1155.66117	-2.162	-0.0012514	-3.5768	-0.0020704	-5.7388	-0.0033218	578.8359457298845	85.02	0.98755	83.474	83.252	84.239	-1.5462	-0.19283	0.00071378	NaN	44.377	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109780	+		19463	31876	15887	15910							0.08956774943112578
ILRLQEANSL	10	Unmodified	_ILRLQEANSL_					0	0	0			REV__tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	REV__tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	578.837862	1155.66117	-1.9922	-0.0011531	-4.2402	-0.0024544	-6.2324	-0.0036075	578.8352910064533	86.047	1.1041	83.826	83.586	84.69	-2.2204	0.15945	-5.4208E-05	NaN	44.377	52	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155010	+		19464	31876	15887	15910							0.08956774943112578
ILRLQEANSL	10	Unmodified	_ILRLQEANSL_					0	0	0			REV__tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	REV__tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	578.837862	1155.66117	0.64153	0.00037134	-8.1819	-0.004736	-7.5404	-0.0043647	578.833231285584	86.38	0.88609	83.753	83.562	84.448	-2.6269	0.086271	-0.0046174	NaN	44.377	43	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112550	+		19465	31876	15887	15910							0.08956774943112578
ILRLVAYCL	9	Unmodified	_ILRLVAYCL_					0	0	0		ENST00000496443.5_1_2:220111358-220112169:+|nuORF;ENST00000475342.5_1_2:220110721-220112169:+|nuORF;ENST00000461417.5_1_2:220110721-220111658:+|nuORF;ENST00000496800.5_1_2:220110721-220112335:+|nuORF;ENST00000475696.5_1_2:220110721-220112662:+|nuORF;ENSG00000115661|ENST00000396738|STK16	ENST00000496443.5_1_2:220111358-220112169:+|nuORF	ENST00000496443.5_1_2:220111358-220112169:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.3452758789062	2	532.320263	1062.62597	-0.92976	-0.00049493	-3.0698	-0.0016341	-3.9996	-0.0021291	532.3184624537801	136.76	1.4624	135.67	135.51	136.97	-1.0858					38	29	2	0	0	0	0.027462	1	11271	11271		40.573	3.5441	1	32530			19466	3117	15888	15911	21556	21556					0.09716440881607014
ILRPKARVVLV	11	Unmodified	_ILRPKARVVLV_					0	0	0		tr|A0A7D6ZH07|A0A7D6ZH07_9CLOT[FeFe]hydrogenaseH-clustermaturationGTPaseHydFOS=ClostridiumintestinaleOX=36845GN=hydFPE=4SV=1	tr|A0A7D6ZH07|A0A7D6ZH07_9CLOT[FeFe]hydrogenaseH-clustermaturationGTPaseHydFOS=ClostridiumintestinaleOX=36845GN=hydFPE=4SV=1	tr|A0A7D6ZH07|A0A7D6ZH07_9CLOT[FeFe]hydrogenaseH-clustermaturationGTPaseHydFOS=ClostridiumintestinaleOX=36845GN=hydFPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	632.4320678710938	2	632.434807	1262.85506	-5.7378	-0.0036288	0.78814	0.00049844	-4.9497	-0.0031304	632.4350808297276	162.89	0.20872	162.66	162.54	162.75	-0.22696					11	5	3	0	0	0	0.72571	1	16605	16605		6.3127	2.9026	1	398490			19467	35558	15889	15912	21557	21557					0.2341477616987504
ILRPKARVVLV	11	Unmodified	_ILRPKARVVLV_					0	0	0		tr|A0A7D6ZH07|A0A7D6ZH07_9CLOT[FeFe]hydrogenaseH-clustermaturationGTPaseHydFOS=ClostridiumintestinaleOX=36845GN=hydFPE=4SV=1	tr|A0A7D6ZH07|A0A7D6ZH07_9CLOT[FeFe]hydrogenaseH-clustermaturationGTPaseHydFOS=ClostridiumintestinaleOX=36845GN=hydFPE=4SV=1	tr|A0A7D6ZH07|A0A7D6ZH07_9CLOT[FeFe]hydrogenaseH-clustermaturationGTPaseHydFOS=ClostridiumintestinaleOX=36845GN=hydFPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	632.4310913085938	2	632.434807	1262.85506	-5.7395	-0.0036299	-0.067111	-4.2443E-05	-5.8066	-0.0036723	632.4345273657251	163.44	1.2114	163.21	162.72	163.93	-0.22696					106	40	3	0	0	0	0.72567	3	16626	16626;16654;16674		6.7355	3.5763	1	356230			19468	35558	15889	15912	21558;21559;21560	21558					0.2341477616987504
ILRPKARVVLV	11	Unmodified	_ILRPKARVVLV_					0	0	0		tr|A0A7D6ZH07|A0A7D6ZH07_9CLOT[FeFe]hydrogenaseH-clustermaturationGTPaseHydFOS=ClostridiumintestinaleOX=36845GN=hydFPE=4SV=1	tr|A0A7D6ZH07|A0A7D6ZH07_9CLOT[FeFe]hydrogenaseH-clustermaturationGTPaseHydFOS=ClostridiumintestinaleOX=36845GN=hydFPE=4SV=1	tr|A0A7D6ZH07|A0A7D6ZH07_9CLOT[FeFe]hydrogenaseH-clustermaturationGTPaseHydFOS=ClostridiumintestinaleOX=36845GN=hydFPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	632.4307861328125	2	632.434807	1262.85506	-6.3094	-0.0039903	-0.6092	-0.00038528	-6.9186	-0.0043755	632.4340739363838	164.76	0.82013	163.12	162.87	163.69	-1.6405					53	29	3	0	0	0	0.72567	1	16255	16255		6.7355	0	1	114650			19469	35558	15889	15912	21561	21561					0.2341477616987504
ILRPKARVVLV	11	Unmodified	_ILRPKARVVLV_					0	0	0		tr|A0A7D6ZH07|A0A7D6ZH07_9CLOT[FeFe]hydrogenaseH-clustermaturationGTPaseHydFOS=ClostridiumintestinaleOX=36845GN=hydFPE=4SV=1	tr|A0A7D6ZH07|A0A7D6ZH07_9CLOT[FeFe]hydrogenaseH-clustermaturationGTPaseHydFOS=ClostridiumintestinaleOX=36845GN=hydFPE=4SV=1	tr|A0A7D6ZH07|A0A7D6ZH07_9CLOT[FeFe]hydrogenaseH-clustermaturationGTPaseHydFOS=ClostridiumintestinaleOX=36845GN=hydFPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	632.434807	1262.85506	-6.4445	-0.0040757	-1.1961	-0.00075648	-7.6407	-0.0048322	632.4338830594294	164.07	0.15649	162.67	162.59	162.75	-1.4083	0.027457	-0.00092784	NaN	6.3127	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302980			19470	35558	15889	15912							0.2341477616987504
ILRPKARVVLV	11	Unmodified	_ILRPKARVVLV_					0	0	0		tr|A0A7D6ZH07|A0A7D6ZH07_9CLOT[FeFe]hydrogenaseH-clustermaturationGTPaseHydFOS=ClostridiumintestinaleOX=36845GN=hydFPE=4SV=1	tr|A0A7D6ZH07|A0A7D6ZH07_9CLOT[FeFe]hydrogenaseH-clustermaturationGTPaseHydFOS=ClostridiumintestinaleOX=36845GN=hydFPE=4SV=1	tr|A0A7D6ZH07|A0A7D6ZH07_9CLOT[FeFe]hydrogenaseH-clustermaturationGTPaseHydFOS=ClostridiumintestinaleOX=36845GN=hydFPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	632.434807	1262.85506	-6.3088	-0.0039899	-0.17811	-0.00011264	-6.4869	-0.0041025	632.4344834951914	164.23	0.12326	162.59	162.52	162.65	-1.6405	-0.05132	0.00035983	NaN	6.3127	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166810			19471	35558	15889	15912							0.2341477616987504
ILRPLFFV	8	Unmodified	_ILRPLFFV_					0	0	0			REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	MULTI-MSMS	OvCa9_classI_Rep2	2	502.81402587890625	2	502.818213	1003.62187	-4.451	-0.0022381	-3.773	-0.0018971	-8.224	-0.0041352	502.8162192928447	153.83	1.4178	153.6	153.28	154.7	-0.22696					88	30	4	0	0	0	0.74361	1	15687	15687		29.842	0	1	684970	+		19472	18532	15890	15913	21562	21562					0.12020719450219985
ILRPPLPIL	9	Unmodified	_ILRPPLPIL_					0	0	0			REV__ENST00000544944.6_1_19:45542792-45543053:+|nuORF	REV__ENST00000544944.6_1_19:45542792-45543053:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.3526000976562	2	516.35242	1030.69029	-0.42341	-0.00021863	0.33536	0.00017317	-0.088051	-4.5465E-05	516.3524564445221	143.41	1.0818	141.97	141.55	142.63	-1.4427					41	20	3	0	0	0	0.61208	1	14036	14036		30.504	5.0535	1	70807	+		19473	27408	15891	15914	21563	21563					0.17616964030071358
ILRPPLPPE	9	Unmodified	_ILRPPLPPE_					0	0	0		ENST00000602622.5_1_16:67693438-67693558:-|nuORF	ENST00000602622.5_1_16:67693438-67693558:-|nuORF	ENST00000602622.5_1_16:67693438-67693558:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	516.3134765625	2	516.316035	1030.61752	-4.2539	-0.0021964	0.14413	7.4418E-05	-4.1098	-0.002122	516.3160035152533	156.4	1.1562	156.18	155.89	157.05	-0.22696					77	28	5	0	0	0	0.6653	1	15961	15961		24.203	2.5004	1	397210			19474	14246	15892	15915	21564	21564					0.10343210236624145
ILRQEVAF	8	Unmodified	_ILRQEVAF_					0	0	0		ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	MULTI-MSMS	OvCa9_classI_Rep2	2	488.2828063964844	2	488.284734	974.554916	-0.60534	-0.00029558	-0.41478	-0.00020253	-1.0201	-0.00049811	488.2844519822403	100.12	1.1905	99.289	98.964	100.15	-0.83051					71	23	4	0	0	0	0.62934	1	9147	9147		57.811	6.4758	1	404010			19475	4415	15893	15916	21565	21565					0.0666206416847217
ILRQEVAF	8	Unmodified	_ILRQEVAF_					0	0	0		ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.2852783203125	2	488.284734	974.554916	-0.26209	-0.00012797	-0.89468	-0.00043686	-1.1568	-0.00056483	488.2841897132088	101.66	1.3309	99.393	99.066	100.4	-2.2665					71	25	4	0	0	0	0.61758	1	9147	9147		60.294	1.512	1	466970			19476	4415	15893	15916	21566	21566					0.0666206416847217
ILRQKEEQLKT	11	Unmodified	_ILRQKEEQLKT_					0	0	0			REV__tr|A0A553SQB9|A0A553SQB9_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26305PE=4SV=1	REV__tr|A0A553SQB9|A0A553SQB9_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26305PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.2536926269531	3	462.608548	1384.80381	-0.37737	-0.00017457	-0.15109	-6.9898E-05	-0.52846	-0.00024447	462.60849328560147	59.416	0.44299	56.025	55.854	56.297	-3.392					12	8	2	0	0	0	0.026364	1	3992	3992		9.2118	0.41249	1	20269	+		19477	30621	15894	15917	21567	21567					0.12680362614514706
ILRQPAPT	8	Unmodified	_ILRQPAPT_					0	0	0			REV__SRCAP|p.L2600Afs*30|1|0.06|ENSG00000080603|chr16:30737837-30737838|-/G|frameshift_variant	REV__SRCAP|p.L2600Afs*30|1|0.06|ENSG00000080603|chr16:30737837-30737838|-/G|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	448.27362060546875	2	448.271627	894.528701	2.1123	0.00094687	0.42255	0.00018942	2.5348	0.0011363	448.27152172913253	118.92	0.80226	118.92	118.49	119.29	0					34	16	3	0	0	0	0.62934	1	13635	13635		57.811	2.3071	1	142140	+		19478	17056	15895	15918	21568	21568					0.07721794996984954
ILRRHLMVW	9	Unmodified	_ILRRHLMVW_					0	0	0		nc|ENSG00000165282|Q8TEQ8-2|PIGO;ENSG00000165282|ENST00000378617|PIGO	nc|ENSG00000165282|Q8TEQ8-2|PIGO	nc|ENSG00000165282|Q8TEQ8-2|PIGO	MULTI-SECPEP	OvCa99_classI_Rep5	1	613.333740234375	2	612.363327	1222.7121	2.6178	0.001603	-4.2292	-0.0025898	-1.6114	-0.00098677	612.3607024210171	115.75	1.294	115.75	115.35	116.64	0					82	27	5	0	0	0	0.027449	1	13275	13275		60.294	36.062	1	2341200			19479	6546	15896	15919	21569	21569					0.10965445507008553
ILRRLLII	8	Unmodified	_ILRRLLII_					0	0	0		tr|A0A553SS68|A0A553SS68_NIACIDUF3221domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02520PE=4SV=1	tr|A0A553SS68|A0A553SS68_NIACIDUF3221domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02520PE=4SV=1	tr|A0A553SS68|A0A553SS68_NIACIDUF3221domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02520PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.34185791015625	2	505.365862	1008.71717	-0.19525	-9.8673E-05	2.7894	0.0014097	2.5942	0.001311	505.3672897311148	133.51	0.39499	133.29	133.16	133.56	-0.22696					9	7	2	0	0	0	0.028476	1	13191	13191		71.378	16.613	1	7162.6			19480	34338	15897	15920	21570	21570					0.2131607264128661
ILRSFVSQL	9	Unmodified	_ILRSFVSQL_					0	0	0			REV__ENSG00000163214|ENST00000457308|DHX57	REV__ENSG00000163214|ENST00000457308|DHX57	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8169555664062	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.55011	1	13857	13857		37.812	4.9991	1	166960	+		19481	20816	15898	15921	21571	21571					0.09498308748334239
ILRSTPYSL	9	Unmodified	_ILRSTPYSL_					0	0	0			REV__HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|14|1|sense	REV__HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|14|1|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	525.3037109375	2	525.303124	1048.5917	-0.83425	-0.00043824	0.55475	0.00029141	-0.2795	-0.00014682	525.3033650881732	103.55	1.826	102.89	101.77	103.6	-0.65199					69	26	4	0	0	0	0.13482	1	9559	9559		87.754	8.3033	1	256840	+		19482	28284	15899	15922	21572	21572					0.06934315994362805
ILRTLPAIL	9	Unmodified	_ILRTLPAIL_					0	0	0		ENST00000527204.5_2_11:62366051-62368578:-|nuORF;ENST00000278823.6_1_11:62366051-62368981:-|nuORF	ENST00000527204.5_2_11:62366051-62368578:-|nuORF	ENST00000527204.5_2_11:62366051-62368578:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	505.3416442871094	2	505.342052	1008.66955	-0.1959	-9.8999E-05	-1.673	-0.00084545	-1.8689	-0.00094444	505.3408478582907	133.56	2.7048	133.33	132.13	134.83	-0.22697					158	54	5	0	0	0	0.33652	4	13209	13186;13209;13245;13251		58.782	18.004	1	1592700			19483	10035	15900	15923	21573;21574;21575;21576	21574					0.16556373650416845
ILRTLPAIL	9	Unmodified	_ILRTLPAIL_					0	0	0		ENST00000527204.5_2_11:62366051-62368578:-|nuORF;ENST00000278823.6_1_11:62366051-62368981:-|nuORF	ENST00000527204.5_2_11:62366051-62368578:-|nuORF	ENST00000527204.5_2_11:62366051-62368578:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	505.3415222167969	2	505.342052	1008.66955	-1.2256	-0.00061935	0.24452	0.00012356	-0.9811	-0.00049579	505.3419478940064	134.8	1.6252	133.68	133.41	135.03	-1.1226					106	32	5	0	0	0	0.48324	2	10948	10916;10948		44.117	10.601	1	959590			19484	10035	15900	15923	21577;21578	21578					0.16556373650416845
ILRTLPAIL	9	Unmodified	_ILRTLPAIL_					0	0	0		ENST00000527204.5_2_11:62366051-62368578:-|nuORF;ENST00000278823.6_1_11:62366051-62368981:-|nuORF	ENST00000527204.5_2_11:62366051-62368578:-|nuORF	ENST00000527204.5_2_11:62366051-62368578:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.3421630859375	2	505.342052	1008.66955	2.4457	0.0012359	-3.7738	-0.0019071	-1.3281	-0.00067113	505.33994217432223	135.22	1.8729	133.68	133.11	134.99	-1.5437					124	33	5	0	0	0	0.42676	2	13073	13073;13085		49.442	3.3386	1	1621800			19485	10035	15900	15923	21579;21580	21579					0.16556373650416845
ILRTSEETI	9	Unmodified	_ILRTSEETI_					0	0	0		ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF;ENSG00000121858|ENST00000241261|TNFSF10	ENST00000472804.1_1_3:172229350-172241222:-|nuORF	ENST00000472804.1_1_3:172229350-172241222:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	531.2965698242188	2	531.295496	1060.57644	-1.3234	-0.00070313	-1.3639	-0.00072463	-2.6873	-0.0014278	531.2953191455317	64.035	1.0614	64.035	63.732	64.793	0					70	25	5	0	0	0	0.049969	1	5792	5792		118.74	33.384	1	4307300			19486	3502	15901	15924	21581	21581					0.0485740440653899
ILRVEKRIIE	10	Unmodified	_ILRVEKRIIE_					0	0	0			REV__tr|A0A7D6ZRC9|A0A7D6ZRC9_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12235PE=4SV=1	REV__tr|A0A7D6ZRC9|A0A7D6ZRC9_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12235PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	635.2627563476562	2	634.906079	1267.79761	1.8247	0.0011585	-0.8613	-0.00054685	0.96342	0.00061168	634.9049448946108	109.95	0.54269	109.95	109.64	110.18	0					17	11	2	0	0	0	0.02709	1	12460	12460		29.17	6.5904	1	129940	+		19487	32155	15902	15925	21582	21582					0.17441889173665004
ILRVGDILI	9	Unmodified	_ILRVGDILI_					0	0	0			REV__tr|A0A7D7A315|A0A7D7A315_9CLOTPhagetailtapemeasureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20105PE=4SV=1	REV__tr|A0A7D7A315|A0A7D7A315_9CLOTPhagetailtapemeasureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20105PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	506.3311462402344	2	506.331685	1010.64882	-0.48567	-0.00024591	0.50848	0.00025746	0.02281	1.155E-05	506.33188661899624	122.71	0.88946	122.49	122.22	123.11	-0.21803					45	17	3	0	0	0	0.36502	1	11902	11902		55.504	0	1	120630	+		19488	32564	15903	15926	21583	21583					0.14391783270752967
ILRVSPDL	8	Unmodified	_ILRVSPDL_					0	0	0		ENSG00000159556|ENST00000290759|ISL2;ENSG00000016082|ENST00000230658|ISL1	ENSG00000159556|ENST00000290759|ISL2	ENSG00000159556|ENST00000290759|ISL2	MULTI-SECPEP	OvCa9_classI_Rep3	3	456.7982482910156	2	456.779285	911.544017	0.45729	0.00020888	-0.28203	-0.00012882	0.17527	8.0059E-05	456.7791168713184	105.95	1.3537	104.6	103.89	105.24	-1.3482					29	25	2	0	0	0	0.028476	1	7368	7368		90.777	19.399	1	12299			19489	6017	15904	15927	21584	21584					0.08470661794183343
ILRVSPDL	8	Unmodified	_ILRVSPDL_					0	0	0		ENSG00000159556|ENST00000290759|ISL2;ENSG00000016082|ENST00000230658|ISL1	ENSG00000159556|ENST00000290759|ISL2	ENSG00000159556|ENST00000290759|ISL2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	456.779285	911.544017	0.60066	0.00027437	-0.37934	-0.00017327	0.22133	0.0001011	456.77893131121823	105.16	0.64276	104.72	104.46	105.1	-0.43642	0.10887	-0.00037604	NaN	90.777	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15601			19490	6017	15904	15927							0.08470661794183343
ILSANKVCL	9	Unmodified	_ILSANKVCL_					0	0	0			REV__ENST00000404272.2_1_6:13949414-13949672:+|nuORF	REV__ENST00000404272.2_1_6:13949414-13949672:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	480.78228759765625	2	480.78097	959.547388	-1.0055	-0.00048344	4.3477	0.0020903	3.3422	0.0016068	480.7829878496556	48.434	1.9358	45.674	45.23	47.166	-2.7603					133	38	6	0	0	0	0.46377	1	2993	2993		45.952	6.9305	1	1103900	+		19491	25431	15905	15928	21585	21585					0.06599588576523274
ILSDISFATG	10	Unmodified	_ILSDISFATG_					0	0	0			REV__ENSG00000164900|ENST00000297537|GBX1	REV__ENSG00000164900|ENST00000297537|GBX1	MULTI-MSMS	OvCa99_classI_Rep5	1	512.2717895507812	2	512.27149	1022.52843	1.2042	0.00061687	-0.36326	-0.00018609	0.84093	0.00043078	512.2711634540926	143.63	2.7616	143.63	141.83	144.6	0					129	55	4	0	0	0	0.64063	1	16814	16814		37.159	1.5408	1	558690	+		19492	21034	15906	15929	21586	21586					0.018063304864767815
ILSDSGATLL	10	Unmodified	_ILSDSGATLL_					0	0	0			REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-MSMS	OvCa99_classI_Rep5	1	495.28118896484375	2	495.279315	988.544076	1.5645	0.00077486	0.99383	0.00049222	2.5583	0.0012671	495.2796616710292	79.494	0.79841	79.494	79.276	80.074	0					38	19	4	0	0	0	0.20801	1	8101	8101		93.195	8.0346	1	4120300	+		19493	21647	15907	15930	21587	21587					0.04934617003527819
ILSDSGATLL	10	Unmodified	_ILSDSGATLL_					0	0	0			REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	495.279315	988.544076	1.5645	0.00077486	0.99383	0.00049222	2.5583	0.0012671	495.2796616710292	79.494	0.79841	79.494	79.276	80.074	0	0	0	NaN	93.195	38	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4120300	+		19494	21647	15907	15930							0.04934617003527819
ILSEIKEAV	9	Unmodified	_ILSEIKEAV_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89971082-89977643:+|nuORF;ENST00000563484.1_1_16:89971421-89975542:+|nuORF;ENST00000570217.1_1_16:89972581-89984411:+|nuORF	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-MSMS	OvCa99_classI_Rep5	1	501.2989196777344	2	501.297507	1000.58046	2.198	0.0011018	-0.14999	-7.519E-05	2.048	0.0010266	501.2972897807824	84.9	1.3671	84.9	84.135	85.502	0					61	32	4	0	0	0	0.012051	1	8888	8888		162.25	0	1	2164100			19495	4889	15908	15931	21588	21588					0.08019493900224006
ILSEIKEAV	9	Unmodified	_ILSEIKEAV_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89971082-89977643:+|nuORF;ENST00000563484.1_1_16:89971421-89975542:+|nuORF;ENST00000570217.1_1_16:89972581-89984411:+|nuORF	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-MATCH	OvCa9_classI_Rep3	3		2	501.297507	1000.58046	-1.2226	-0.00061288	-1.0687	-0.00053572	-2.2912	-0.0011486	501.2963695581765	87.335	0.50899	85.158	84.784	85.293	-2.1768	0.12884	-0.00087128	NaN	162.25	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94306			19496	4889	15908	15931							0.08019493900224006
ILSEVQQAV	9	Unmodified	_ILSEVQQAV_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226555150-226558263:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MSMS	OvCa99_classI_Rep5	1	493.78070068359375	2	493.779482	985.544411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.059	1	93.059	92.559	93.559	0								0	0	0	4.0899E-05	1	10081	10081		166.68	55.03	1				19497	5096	15909	15932	21589	21589					0.05106036723384477
ILSEVQQAV	9	Unmodified	_ILSEVQQAV_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226555150-226558263:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MSMS	OvCa99_classI_Rep5	1	493.7802429199219	2	493.779482	985.544411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.277	1	93.277	92.777	93.777	0								0	0	0	0.023656	1	10112	10112		98.629	10.933	1				19498	5096	15909	15932	21590	21590					0.05106036723384477
ILSFSTNLLGI	11	Unmodified	_ILSFSTNLLGI_					0	0	0		tr|A0A553SU68|A0A553SU68_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_06435PE=4SV=1	tr|A0A553SU68|A0A553SU68_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_06435PE=4SV=1	tr|A0A553SU68|A0A553SU68_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_06435PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3424682617188	2	589.344989	1176.67542	-3.0463	-0.0017953	-0.38122	-0.00022467	-3.4276	-0.00202	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.71191	1	15015	15015		25.574	2.0514	1	272220			19499	34574	15910	15933	21591	21591					0.09415427371436635
ILSGFQVVGVF	11	Unmodified	_ILSGFQVVGVF_					0	0	0		ENST00000494720.5_1_2:219130300-219130549:-|nuORF;ENST00000475678.5_1_2:219129258-219130549:-|nuORF	ENST00000494720.5_1_2:219130300-219130549:-|nuORF	ENST00000494720.5_1_2:219130300-219130549:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	583.3345336914062	2	583.334424	1164.6543	0.47641	0.00027791	2.0744	0.0012101	2.5508	0.001488	583.3354161510537	140.18	1.0569	140.18	139.92	140.98	0					55	21	4	0	0	0	0.68021	1	16417	16417		36.447	1.2947	1	432070			19500	12451	15911	15934	21592	21592					0.0785546206257095
ILSGGPPSSR	10	Unmodified	_ILSGGPPSSR_					0	0	0			REV__ENST00000263174.8_1_1:100111748-100111862:+|nuORF	REV__ENST00000263174.8_1_1:100111748-100111862:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.30487060546875	2	485.769448	969.524344	-0.78708	-0.00038234	-1.9693	-0.00095665	-2.7564	-0.001339	485.76837004538413	127.61	1.0177	126.17	125.69	126.71	-1.4357					33	19	2	0	0	0	0.026891	1	12148	12148		18.262	0	1	25740	+		19501	23992	15912	15935	21593	21593					0.03836285783427229
ILSGLFTT	8	Unmodified	_ILSGLFTT_					0	0	0			REV__nc|ENSG00000196335|Q9BXU1-3|STK31	REV__nc|ENSG00000196335|Q9BXU1-3|STK31	MULTI-MSMS	OvCa9_classI_Rep2	2	426.24481201171875	2	426.247286	850.48002	-0.93249	-0.00039747	-2.0488	-0.0008733	-2.9813	-0.0012708	426.2463036759244	138.33	1.7168	138.1	137.59	139.3	-0.22696					83	34	3	0	0	0	0.73626	1	13890	13890		33.516	6.7195	1	161940	+		19502	22811	15913	15936	21594	21594					0.04879881637236849
ILSGLFTT	8	Unmodified	_ILSGLFTT_					0	0	0			REV__nc|ENSG00000196335|Q9BXU1-3|STK31	REV__nc|ENSG00000196335|Q9BXU1-3|STK31	MULTI-MSMS	OvCa9_classI_Rep3	3	426.2458190917969	2	426.247286	850.48002	-1.1759	-0.00050123	-1.8651	-0.00079498	-3.041	-0.0012962	426.2464135300909	139.12	1.5749	138.06	137.54	139.11	-1.0595					80	31	4	0	0	0	0.73288	1	11406	11406		35.201	1.6851	1	422340	+		19503	22811	15913	15936	21595	21595					0.04879881637236849
ILSGPKANVIS	11	Unmodified	_ILSGPKANVIS_					0	0	0		nc|ENSG00000162105|Q9UPX8-4|SHANK2;nc|ENSG00000162105|Q9UPX8-1|SHANK2;ENSG00000162105|ENST00000601538|SHANK2	nc|ENSG00000162105|Q9UPX8-4|SHANK2	nc|ENSG00000162105|Q9UPX8-4|SHANK2	MULTI-SECPEP	OvCa9_classI_Rep2	2	550.8135986328125	2	549.829506	1097.64446	0.36746	0.00020204	-3.9517	-0.0021728	-3.5843	-0.0019707	550.3273320390521	106.86	0.69409	106.55	106.27	106.97	-0.30836					18	13	2	0	0	0	0.025344	1	9929	9929		27.047	7.0505	1	15731			19504	6158	15914	15937	21596	21596					0.0995427405719056
ILSGPKANVIS	11	Unmodified	_ILSGPKANVIS_					0	0	0		nc|ENSG00000162105|Q9UPX8-4|SHANK2;nc|ENSG00000162105|Q9UPX8-1|SHANK2;ENSG00000162105|ENST00000601538|SHANK2	nc|ENSG00000162105|Q9UPX8-4|SHANK2	nc|ENSG00000162105|Q9UPX8-4|SHANK2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	549.829506	1097.64446	-0.2806	-0.00015428	-1.9378	-0.0010655	-2.2184	-0.0012197	549.8288551118964	107.78	0.47404	106.58	106.43	106.9	-1.1978	0.015951	0.00062936	NaN	27.047	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17116			19505	6158	15914	15937							0.0995427405719056
ILSGVIRSV	9	Unmodified	_ILSGVIRSV_					0	0	0		nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2;ENST00000599905.1_1_19:7702035-7703991:+|nuORF;STXBP2|p.D25Vfs*53|1|0.21|ENSG00000076944|chr19:7638762-7638762|A/-|frameshift_variant;ENST00000595181.5_1_19:7702035-7704702:+|nuORF;ENST00000597467.1_1_19:7701993-7703991:+|nuORF	nc|ENSG00000076944|Q15833-2|STXBP2	nc|ENSG00000076944|Q15833-2|STXBP2	MULTI-MSMS	OvCa99_classI_Rep5	1	472.3017578125	2	472.300384	942.586216	2.7021	0.0012762	-0.56367	-0.00026622	2.1384	0.00101	472.30005639175494	88.776	0.53115	88.776	88.551	89.082	0					34	12	4	0	0	0	0.18887	1	9445	9445		78.264	8.6362	1	2719200			19506	1561	15915	15938	21597	21597					0.112626372025602
ILSGVVTKM	9	Unmodified	_ILSGVVTKM_					0	0	0		ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.2519836425781	2	474.283346	946.552139	1.9595	0.00092935	0.33152	0.00015724	2.291	0.0010866	474.28337941396114	82.912	0.55441	82.912	82.694	83.249	0					25	12	3	0	0	0	0.027402	1	8616	8616		56.721	0	1	1139200			19507	4977	15916	15939	21598	21598					0.07672472719298185
ILSIIGEAIW	10	Unmodified	_ILSIIGEAIW_					0	0	0		tr|A0A7D6VND3|A0A7D6VND3_9CLOTPhageholinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14845PE=4SV=1	tr|A0A7D6VND3|A0A7D6VND3_9CLOTPhageholinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14845PE=4SV=1	tr|A0A7D6VND3|A0A7D6VND3_9CLOTPhageholinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14845PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	557.8294067382812	2	557.828975	1113.6434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.65	1	129.65	129.15	130.15	0								0	0	0	0.13325	1	15037	15037		55.504	2.5675	1				19508	34694	15917	15940	21599	21599					0.09112059688277441
ILSKAYPAIGT	11	Unmodified	_ILSKAYPAIGT_					0	0	0		ENSG00000123500|ENST00000651968|COL10A1	ENSG00000123500|ENST00000651968|COL10A1	ENSG00000123500|ENST00000651968|COL10A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3295288085938	2	567.331882	1132.64921	-0.48412	-0.00027465	-3.1025	-0.0017602	-3.5866	-0.0020348	567.3299446868054	145.54	4.8872	144.11	142.68	147.57	-1.4357					247	95	4	0	0	0	0.68399	1	14254	14254		35.152	7.0705	1	208760			19509	3599	15918	15941	21600	21600					0.08819158199935373
ILSKKNKAGG	10	Unmodified	_ILSKKNKAGG_					0	0	0		L1PA6_dup2267|chr6:2299837-2303022:+|1.5111882528479883|0.3006554191737456|2.33|429.0|17|1|sense;L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|165|3|sense	L1PA6_dup2267|chr6:2299837-2303022:+|1.5111882528479883|0.3006554191737456|2.33|429.0|17|1|sense	L1PA6_dup2267|chr6:2299837-2303022:+|1.5111882528479883|0.3006554191737456|2.33|429.0|17|1|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	508.321044921875	2	508.316566	1014.61858	1.3208	0.00067137	3.1443	0.0015983	4.4651	0.0022697	508.31794640443843	149.8	0.84294	149.8	149.4	150.24	0					32	16	3	0	0	0	0.5675	1	17555	17555		45.972	1.8554	1	90862			19510	14718	15919	15942	21601	21601					0.1118542460557137
ILSLAMAYL	9	Unmodified	_ILSLAMAYL_					0	0	0		tr|A0A553SGR1|A0A553SGR1_NIACITransglutaminaseOS=NialliacirculansOX=1397GN=CEQ21_11305PE=4SV=1	tr|A0A553SGR1|A0A553SGR1_NIACITransglutaminaseOS=NialliacirculansOX=1397GN=CEQ21_11305PE=4SV=1	tr|A0A553SGR1|A0A553SGR1_NIACITransglutaminaseOS=NialliacirculansOX=1397GN=CEQ21_11305PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	497.7881164550781	2	497.785721	993.55689	NaN	NaN	NaN	NaN	NaN	NaN	NaN	150.31	1	150.31	149.81	150.81	0								0	0	0	0.17967	1	17597	17597		35.201	3.2459	1				19511	33183	15920	15943	21602	21602					0.05985356862061053
ILSLAPEVL	9	Unmodified	_ILSLAPEVL_					0	0	0		tr|A0A7D6VTI8|A0A7D6VTI8_9CLOTLargeribosomalsubunitproteinuL14OS=ClostridiumintestinaleOX=36845GN=rplNPE=3SV=1	tr|A0A7D6VTI8|A0A7D6VTI8_9CLOTLargeribosomalsubunitproteinuL14OS=ClostridiumintestinaleOX=36845GN=rplNPE=3SV=1	tr|A0A7D6VTI8|A0A7D6VTI8_9CLOTLargeribosomalsubunitproteinuL14OS=ClostridiumintestinaleOX=36845GN=rplNPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	477.7987976074219	2	477.797143	953.579734	0.67479	0.00032241	-0.28844	-0.00013781	0.38635	0.0001846	477.7969029532152	160.66	0.90506	160.66	160.35	161.26	0					50	17	4	0	0	0	0.48324	1	18848	18848		44.117	1.7207	1	238590			19512	35124	15921	15944	21603	21603					0.10108699251179587
ILSLTSRSL	9	Unmodified	_ILSLTSRSL_					0	0	0		ENST00000520441.5_1_6:90331314-90331521:-|nuORF	ENST00000520441.5_1_6:90331314-90331521:-|nuORF	ENST00000520441.5_1_6:90331314-90331521:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	495.2864990234375	2	495.303124	988.591695	0.2492	0.00012343	3.359	0.0016637	3.6082	0.0017871	495.30455281246634	106.96	1.419	106.65	106.37	107.79	-0.30836					55	28	3	0	0	0	0.027247	1	9959	9959		90.37	5.4543	1	73329			19513	13104	15922	15945	21604	21604					0.09694315994374847
ILSLVGLSWMD	11	Unmodified	_ILSLVGLSWMD_					0	0	0		ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	ENSG00000051382|ENST00000674063|PIK3CB	MULTI-SECPEP	OvCa99_classI_Rep5	1	616.7900390625	2	617.331024	1232.6475	-0.2533	-0.00015637	2.7435	0.0016937	2.4902	0.0015373	617.335346501881	35.614	0.18611	35.614	35.475	35.661	0					5	3	2	0	0	0	0.025861	1	1817	1817		37.812	5.8567	1	9414.7			19514	1187	15923	15946	21605	21605					0.040477811196751645
ILSLYNLIY	9	Unmodified	_ILSLYNLIY_					0	0	0			REV__Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|128|1|anti-sense	REV__Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|128|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	556.3222045898438	2	556.323525	1110.6325	-0.97737	-0.00054373	0.7636	0.00042481	-0.21377	-0.00011892	556.3237904713112	126.92	1.6681	125.48	125.15	126.81	-1.4357					83	32	4	0	0	0	0.22621	1	12120	12120		71.877	10.906	1	275220	+		19515	28167	15924	15947	21606	21606					0.08160657314010678
ILSLYNLIY	9	Unmodified	_ILSLYNLIY_					0	0	0			REV__Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|128|1|anti-sense	REV__Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|128|1|anti-sense	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	556.323525	1110.6325	1.2043	0.00066999	-1.3301	-0.00073995	-0.12576	-6.9962E-05	556.32262440789	125.61	1.4815	125.38	125.01	126.49	-0.2359	-0.1088	-0.00097399	NaN	71.877	75	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	284060	+		19516	28167	15924	15947							0.08160657314010678
ILSPFLDS	8	Unmodified	_ILSPFLDS_					0	0	0		ENSG00000100852|ENST00000345122|ARHGAP5;nc|ENSG00000100852|Q13017-2|ARHGAP5	ENSG00000100852|ENST00000345122|ARHGAP5	ENSG00000100852|ENST00000345122|ARHGAP5	MULTI-SECPEP	OvCa99_classI_Rep5	1	446.5701599121094	2	446.244744	890.474934	-0.65014	-0.00029012	-1.5926	-0.00071069	-2.2427	-0.0010008	446.24431683673663	43.853	0.21595	43.853	43.737	43.952	0					7	4	2	0	0	0	0.028476	1	2912	2912		12.959	3.2535	1	32858			19517	2112	15925	15948	21607	21607					0.02531577774618654
ILSPFLDS	8	Unmodified	_ILSPFLDS_					0	0	0		ENSG00000100852|ENST00000345122|ARHGAP5;nc|ENSG00000100852|Q13017-2|ARHGAP5	ENSG00000100852|ENST00000345122|ARHGAP5	ENSG00000100852|ENST00000345122|ARHGAP5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	446.244744	890.474934	1.6926	0.00075531	-5.0323	-0.0022456	-3.3397	-0.0014903	446.2425395696462	46.503	0.79392	43.793	43.596	44.39	-2.7097	0.10045	-0.0006655	NaN	12.207	17	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17755			19518	2112	15925	15948							0.02531577774618654
ILSPFLDS	8	Unmodified	_ILSPFLDS_					0	0	0		ENSG00000100852|ENST00000345122|ARHGAP5;nc|ENSG00000100852|Q13017-2|ARHGAP5	ENSG00000100852|ENST00000345122|ARHGAP5	ENSG00000100852|ENST00000345122|ARHGAP5	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	446.244744	890.474934	-0.28622	-0.00012772	-4.7556	-0.0021222	-5.0418	-0.0022499	446.2425492215166	46.505	0.87544	43.433	43.241	44.117	-3.0724	-0.26027	-0.00041856	NaN	12.207	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43428			19519	2112	15925	15948							0.02531577774618654
ILSPLPCPF	9	Unmodified	_ILSPLPCPF_					0	0	0			REV__ENST00000409478.5_1_2:136481871-136482048:+|nuORF	REV__ENST00000409478.5_1_2:136481871-136482048:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	493.77276611328125	2	493.772614	985.530675	-1.0638	-0.00052526	0.57393	0.00028339	-0.48984	-0.00024187	493.7727477458053	34.251	1.0885	31.542	31.168	32.257	-2.7097					41	21	3	0	0	0	0.58665	1	1295	1295		33.516	0	1	147330	+		19520	25468	15926	15949	21608	21608					0.03733087690591219
ILSQQRGEI	9	Unmodified	_ILSQQRGEI_					0	0	0		ENSG00000047932|ENST00000368498|GOPC;nc|ENSG00000047932|Q9HD26-2|GOPC	ENSG00000047932|ENST00000368498|GOPC	ENSG00000047932|ENST00000368498|GOPC	MULTI-MSMS	OvCa9_classI_Rep2	2	522.2968139648438	2	522.29583	1042.57711	-0.45713	-0.00023876	4.0282	0.0021039	3.5711	0.0018652	522.297746706886	99.648	1.0909	98.818	98.467	99.558	-0.83052					63	21	4	0	0	0	0.38969	1	9102	9102		52.937	5.2794	1	252010			19521	1152	15927	15950	21609	21609					0.057522438462456194
ILSRLPLLY	9	Unmodified	_ILSRLPLLY_					0	0	0		ENST00000261497.8_1_17:20905216-20905390:-|nuORF	ENST00000261497.8_1_17:20905216-20905390:-|nuORF	ENST00000261497.8_1_17:20905216-20905390:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	544.3461303710938	2	544.347335	1086.68012	0.25522	0.00013893	-0.24647	-0.00013416	0.0087488	4.7624E-06	544.3470145971799	130.64	2.2153	129.51	128.62	130.84	-1.1249					69	44	3	0	0	0	0.38969	2	10392	10392;10398		52.937	8.5595	1	117100			19522	9866	15928	15951	21610;21611	21610					0.1402435630486707
ILSRVTESV	9	Unmodified	_ILSRVTESV_					0	0	0		nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153	nc|ENSG00000124789|P49790-2|NUP153	nc|ENSG00000124789|P49790-2|NUP153	MULTI-MSMS	OvCa99_classI_Rep5	1	502.2913513183594	2	502.292756	1002.57096	-1.112	-0.00055854	0.2824	0.00014185	-0.82959	-0.0004167	502.29271206076845	69.882	0.53804	69.882	69.672	70.21	0					25	12	3	0	0	0	0.033166	1	6667	6667		132.76	33.383	1	1907900			19523	3681	15929	15952	21612	21612					0.06977725614717656
ILSRVTESV	9	Unmodified	_ILSRVTESV_					0	0	0		nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153	nc|ENSG00000124789|P49790-2|NUP153	nc|ENSG00000124789|P49790-2|NUP153	MULTI-MATCH	OvCa9_classI_Rep3	3		2	502.292756	1002.57096	-0.26624	-0.00013373	-0.12379	-6.2179E-05	-0.39003	-0.00019591	502.29266425005875	72.574	0.89336	69.972	69.571	70.464	-2.6023	0.045016	-0.00015997	NaN	132.76	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36122			19524	3681	15929	15952							0.06977725614717656
ILSSLLLN	8	Unmodified	_ILSSLLLN_					0	0	0			REV__nc|ENSG00000158691|O43309-2|ZSCAN12	REV__nc|ENSG00000158691|O43309-2|ZSCAN12	MULTI-MSMS	OvCa9_classI_Rep3	3	436.7745056152344	2	436.776211	871.537869	-2.6718	-0.001167	-0.40157	-0.0001754	-3.0734	-0.0013424	436.7759504548302	144.44	1.6886	143.47	143.1	144.79	-0.97299					107	33	5	0	0	0	0.75915	1	12105	12105		20.482	1.1219	1	989010	+		19525	28951	15930	15953	21613	21613					0.09696143562678117
ILSSMIKRV	9	Unmodified	_ILSSMIKRV_					0	0	0		tr|A0A7D6ZQ59|A0A7D6ZQ59_9CLOTBMPfamilyABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23080PE=3SV=1	tr|A0A7D6ZQ59|A0A7D6ZQ59_9CLOTBMPfamilyABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23080PE=3SV=1	tr|A0A7D6ZQ59|A0A7D6ZQ59_9CLOTBMPfamilyABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23080PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.825927734375	2	523.823169	1045.63179	2.711	0.0014201	3.3635	0.0017619	6.0745	0.003182	523.8247853028438	134.31	1.1882	132.79	132.34	133.53	-1.5257					49	23	3	0	0	0	0.53957	1	12980	12980		38.806	2.3594	1	57964			19526	35696	15931	15954	21614	21614					0.11079539393290361
ILSSMRLPL	9	Unmodified	_ILSSMRLPL_					0	0	0		ENSG00000179832|ENST00000326134|MROH1;nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF;nc|ENSG00000179832|Q8NDA8-7|MROH1;MROH1|p.R711Gfs*26|1|0.22|ENSG00000179832|chr8:144241470-144241470|A/-|frameshift_variant;MROH1|p.A749Rfs*134|1|0.34|ENSG00000179832|chr8:144242423-144242424|-/GGCACGT|frameshift_variant	ENSG00000179832|ENST00000326134|MROH1	ENSG00000179832|ENST00000326134|MROH1	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.3084106445312	2	515.309895	1028.60524	0.014511	7.4778E-06	-2.7377	-0.0014108	-2.7232	-0.0014033	515.3086875942449	115.74	0.69287	114.34	114.07	114.76	-1.3977					24	13	2	0	0	0	0.42676	1	10793	10793		49.442	4.9105	1	95632			19527	7843	15932	15955	21615	21615					0.0920785050197992
ILSSTIITL	9	Unmodified	_ILSSTIITL_					0	0	0			REV__ENSG00000179630|ENST00000325686|LACC1	REV__ENSG00000179630|ENST00000325686|LACC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.8010559082031	2	480.802426	959.590298	-3.2353	-0.0015556	0.26588	0.00012784	-2.9695	-0.0014277	480.80242897085384	151.49	1.9682	150.06	149.63	151.6	-1.4344					128	43	5	0	0	0	0.6653	1	14947	14947		24.203	0	1	1260100	+		19528	22133	15933	15956	21616	21616					0.10888681905623798
ILSTLIAQI	9	Unmodified	_ILSTLIAQI_					0	0	0			REV__TRRAP|p.Q3700Cfs*14|1|0.37|ENSG00000196367|chr7:99011251-99011252|-/GTGCGTTAAATCTGTCACCAGAA|frameshift_variant	REV__TRRAP|p.Q3700Cfs*14|1|0.37|ENSG00000196367|chr7:99011251-99011252|-/GTGCGTTAAATCTGTCACCAGAA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	486.3115539550781	2	486.310418	970.606283	1.5649	0.00076102	0.56222	0.00027341	2.1271	0.0010344	486.3105740309342	122.81	0.64694	122.81	122.58	123.23	0					31	13	3	0	0	0	0.38529	1	14139	14139		53.351	3.9099	1	514120	+		19529	22817	15934	15957	21617	21617					0.11980388142512766
ILSTLIAQI	9	Unmodified	_ILSTLIAQI_					0	0	0			REV__TRRAP|p.Q3700Cfs*14|1|0.37|ENSG00000196367|chr7:99011251-99011252|-/GTGCGTTAAATCTGTCACCAGAA|frameshift_variant	REV__TRRAP|p.Q3700Cfs*14|1|0.37|ENSG00000196367|chr7:99011251-99011252|-/GTGCGTTAAATCTGTCACCAGAA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	486.3101806640625	2	486.310418	970.606283	-0.063392	-3.0828E-05	0.43301	0.00021058	0.36962	0.00017975	486.31053033420585	122.61	0.98836	122.39	122.17	123.15	-0.21803					49	19	3	0	0	0	0.51865	1	11874	11874		40.778	1.5253	1	121260	+		19530	22817	15934	15957	21618	21618					0.11980388142512766
ILSWLSNPEV	10	Unmodified	_ILSWLSNPEV_					0	0	0			REV__nc|ENSG00000109790|Q96PQ7-5|KLHL5	REV__nc|ENSG00000109790|Q96PQ7-5|KLHL5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	579.2796020507812	2	579.313689	1156.61282	-0.89615	-0.00051915	0.32874	0.00019044	-0.56741	-0.00032871	579.3135901616397	87.081	1.855	84.454	84.054	85.909	-2.6269					79	36	4	0	0	0	0.026688	1	7479	7479		58.782	7.5893	1	327920	+		19531	17951	15935	15958	21619	21619					0.040782813032365084
ILTDITKGV	9	Unmodified	_ILTDITKGV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;GNB2-EEF2|1|fusion	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OvCa99_classI_Rep5	1	480.2934265136719	2	480.292225	958.569897	2.6568	0.001276	-0.95118	-0.00045684	1.7056	0.0008192	480.29153663971164	89.136	1.7014	89.136	88.803	90.504	0					104	41	4	0	0	0	0.014622	3	9492	9492;9520;9552		154.12	49.372	1	19490000			19532	6826	15936	15959	21620;21621;21622	21620					0.0889551124580521
ILTDITKGV	9	Unmodified	_ILTDITKGV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;GNB2-EEF2|1|fusion	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OvCa9_classI_Rep2	2	480.2919921875	2	480.292225	958.569897	1.2818	0.00061562	-1.6599	-0.00079724	-0.37815	-0.00018162	480.2911906775337	90.731	1.4228	89.429	88.73	90.153	-1.302					82	27	4	0	0	0	0.046778	2	8017	8010;8017		120.87	46.613	1	447190			19533	6826	15936	15959	21623;21624	21624					0.0889551124580521
ILTDITKGV	9	Unmodified	_ILTDITKGV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;GNB2-EEF2|1|fusion	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OvCa9_classI_Rep3	3	480.29156494140625	2	480.292225	958.569897	-0.65592	-0.00031503	0.16987	8.159E-05	-0.48605	-0.00023345	480.2921695101672	91.373	1.2505	89.349	88.93	90.18	-2.0241					79	24	4	0	0	0	0.046778	4	5730	5724;5730;5736;5743		120.87	35.953	1	973290			19534	6826	15936	15959	21625;21626;21627;21628	21626					0.0889551124580521
ILTDITKGV	9	Unmodified	_ILTDITKGV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;GNB2-EEF2|1|fusion	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.292724609375	2	480.292225	958.569897	-0.59851	-0.00028746	0.24617	0.00011823	-0.35234	-0.00016923	480.29219969639155	91.827	1.9322	89.285	88.244	90.176	-2.5425					90	37	4	0	0	0	0.036986	3	7956	7947;7956;7968		129.42	41.725	1	870750			19535	6826	15936	15959	21629;21630;21631	21630					0.0889551124580521
ILTDTNIEN	9	Unmodified	_ILTDTNIEN_					0	0	0			REV__tr|A0A7D6VND2|A0A7D6VND2_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12415PE=4SV=1	REV__tr|A0A7D6VND2|A0A7D6VND2_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12415PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.8032836914062	2	516.764029	1031.5135	0.60771	0.00031404	-3.2829	-0.0016965	-2.6752	-0.0013824	516.7624100148654	157.73	0.64975	157.73	157.5	158.15	0					18	12	2	0	0	0	0.027462	1	18464	18464		30.318	12.85	1	63371	+		19536	31172	15937	15960	21632	21632					-0.0009916138151311316
ILTDVVIVV	9	Unmodified	_ILTDVVIVV_					0	0	0		ENSG00000113916|ENST00000406870|BCL6;nc|ENSG00000113916|P41182-2|BCL6	ENSG00000113916|ENST00000406870|BCL6	ENSG00000113916|ENST00000406870|BCL6	MULTI-MSMS	OvCa99_classI_Rep5	1	485.8143310546875	2	485.812793	969.611034	1.4031	0.00068165	0.38188	0.00018552	1.785	0.00086717	485.8128285577155	147.57	4.5874	147.57	147.11	151.7	0					195	92	4	0	0	0	0.073432	6	17280	17234;17256;17280;17354;17426;17500		105.27	28.422	1	1725900			19537	3001	15938	15961	21633;21634;21635;21636;21637;21638	21635					0.12501272285282994
ILTEIFQN	8	Unmodified	_ILTEIFQN_					0	0	0		ENST00000207870.7_1_3:38390080-38401867:+|nuORF	ENST00000207870.7_1_3:38390080-38401867:+|nuORF	ENST00000207870.7_1_3:38390080-38401867:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	488.2899169921875	2	489.26875	976.522947	-0.99832	-0.00048845	1.8987	0.00092898	0.9004	0.00044054	489.26885895921845	97.267	2.0794	95.508	94.389	96.469	-1.7595					55	40	3	0	0	0	0.028476	1	6434	6434		31.955	6.5047	1	85150			19538	9657	15939	15962	21639	21639					0.03374651694673503
ILTEIFQN	8	Unmodified	_ILTEIFQN_					0	0	0		ENST00000207870.7_1_3:38390080-38401867:+|nuORF	ENST00000207870.7_1_3:38390080-38401867:+|nuORF	ENST00000207870.7_1_3:38390080-38401867:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	489.26875	976.522947	0.60878	0.00029786	0.16713	8.1772E-05	0.77591	0.00037963	489.26809383365173	96.448	1.035	95.42	95.063	96.098	-1.0281	-0.016796	-0.00070658	NaN	31.955	42	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74165			19539	9657	15939	15962							0.03374651694673503
ILTEIFQN	8	Unmodified	_ILTEIFQN_					0	0	0		ENST00000207870.7_1_3:38390080-38401867:+|nuORF	ENST00000207870.7_1_3:38390080-38401867:+|nuORF	ENST00000207870.7_1_3:38390080-38401867:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	489.26875	976.522947	0.6873	0.00033627	0.42492	0.0002079	1.1122	0.00054417	489.2682021085342	97.762	1.4167	95.383	94.758	96.175	-2.3786	-0.053997	-0.00045433	NaN	31.955	40	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73237			19540	9657	15939	15962							0.03374651694673503
ILTENIAKL	9	Unmodified	_ILTENIAKL_					0	0	0			REV__tr|A0A7D6ZWL3|A0A7D6ZWL3_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18335PE=3SV=1	REV__tr|A0A7D6ZWL3|A0A7D6ZWL3_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18335PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.8124694824219	2	507.813325	1013.6121	-0.12107	-6.1481E-05	-0.4963	-0.00025203	-0.61737	-0.00031351	507.81301768077884	108.09	2.3576	107.86	106.9	109.26	-0.22498					116	47	4	0	0	0	0.27001	1	10140	10140		66.429	5.4573	1	960970	+		19541	32293	15940	15963	21640	21640					0.10583486654184071
ILTESEIKL	9	Unmodified	_ILTESEIKL_					0	0	0		ENST00000476913.1_1_1:231665086-231678380:+|nuORF;ENST00000602825.5_1_1:231664421-231690428:+|nuORF;ENSG00000116918|ENST00000366639|TSNAX	ENST00000476913.1_1_1:231665086-231678380:+|nuORF	ENST00000476913.1_1_1:231665086-231678380:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	523.3119506835938	2	523.310615	1044.60668	1.5922	0.00083324	0.15559	8.142E-05	1.7478	0.00091466	523.3106176120427	96.987	0.76989	96.987	96.668	97.438	0					46	17	4	0	0	0	0.010652	2	10655	10630;10655		166.68	27.853	1	8465500			19542	3219	15941	15964	21641;21642	21642					0.08615763071702531
ILTESEIKL	9	Unmodified	_ILTESEIKL_					0	0	0		ENST00000476913.1_1_1:231665086-231678380:+|nuORF;ENST00000602825.5_1_1:231664421-231690428:+|nuORF;ENSG00000116918|ENST00000366639|TSNAX	ENST00000476913.1_1_1:231665086-231678380:+|nuORF	ENST00000476913.1_1_1:231665086-231678380:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.3125610351562	2	523.310615	1044.60668	-0.77296	-0.0004045	0.50891	0.00026632	-0.26406	-0.00013818	523.3107459615742	98.84	1.9516	96.515	96.228	98.179	-2.3253					84	37	3	0	0	0	0.3076	1	8800	8800		62.107	5.3864	1	460520			19543	3219	15941	15964	21643	21643					0.08615763071702531
ILTESEIKL	9	Unmodified	_ILTESEIKL_					0	0	0		ENST00000476913.1_1_1:231665086-231678380:+|nuORF;ENST00000602825.5_1_1:231664421-231690428:+|nuORF;ENSG00000116918|ENST00000366639|TSNAX	ENST00000476913.1_1_1:231665086-231678380:+|nuORF	ENST00000476913.1_1_1:231665086-231678380:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	523.310615	1044.60668	0.16993	8.8926E-05	-0.78883	-0.0004128	-0.6189	-0.00032387	523.3100472876056	97.501	1.9738	96.542	96.266	98.24	-0.95857	0.0089914	-0.00086526	NaN	62.107	86	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	394260			19544	3219	15941	15964							0.08615763071702531
ILTESEIKL	9	Unmodified	_ILTESEIKL_					0	0	0		ENST00000476913.1_1_1:231665086-231678380:+|nuORF;ENST00000602825.5_1_1:231664421-231690428:+|nuORF;ENSG00000116918|ENST00000366639|TSNAX	ENST00000476913.1_1_1:231665086-231678380:+|nuORF	ENST00000476913.1_1_1:231665086-231678380:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	523.310615	1044.60668	-0.50722	-0.00026543	0.08082	4.2294E-05	-0.4264	-0.00022314	523.3105194517289	98.301	1.6478	96.542	96.262	97.91	-1.7595	0.0089769	4.4928E-05	NaN	62.107	76	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	532570			19545	3219	15941	15964							0.08615763071702531
ILTFVKDPQL	10	Unmodified	_ILTFVKDPQL_					0	0	0		ENSG00000006659|ENST00000392052|LGALS14;nc|ENSG00000006659|Q8TCE9-2|LGALS14	ENSG00000006659|ENST00000392052|LGALS14	ENSG00000006659|ENST00000392052|LGALS14	MULTI-SECPEP	OvCa9_classI_Rep4_	4	588.298583984375	2	587.347532	1172.68051	-2.8639	-0.0016821	-0.64995	-0.00038175	-3.5139	-0.0020639	587.347483232118	88.037	0.85472	85.435	85.129	85.984	-2.6027					25	16	2	0	0	0	0.026606	1	7498	7498		71.877	9.7701	1	37177			19546	885	15942	15965	21644	21644					0.10107731234052153
ILTHEINVPD	10	Unmodified	_ILTHEINVPD_					0	0	0		tr|A0A553SQU6|A0A553SQU6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07230PE=4SV=1	tr|A0A553SQU6|A0A553SQU6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07230PE=4SV=1	tr|A0A553SQU6|A0A553SQU6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07230PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.8514404296875	2	575.808771	1149.60299	-1.1273	-0.00064909	2.2271	0.0012824	1.0999	0.00063332	575.811722262324	89.282	0.39301	87.151	86.944	87.337	-2.1309					11	7	2	0	0	0	0.026956	1	5464	5464		19.997	3.5236	1	24830			19547	34198	15943	15966	21645	21645					0.034170932978668134
ILTHFETI	8	Unmodified	_ILTHFETI_					0	0	0		tr|A0A7D6VR48|A0A7D6VR48_9CLOTAspartyl/glutamyl-tRNA(Asn/Gln)amidotransferasesubunitCOS=ClostridiumintestinaleOX=36845GN=gatCPE=3SV=1	tr|A0A7D6VR48|A0A7D6VR48_9CLOTAspartyl/glutamyl-tRNA(Asn/Gln)amidotransferasesubunitCOS=ClostridiumintestinaleOX=36845GN=gatCPE=3SV=1	tr|A0A7D6VR48|A0A7D6VR48_9CLOTAspartyl/glutamyl-tRNA(Asn/Gln)amidotransferasesubunitCOS=ClostridiumintestinaleOX=36845GN=gatCPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.2895812988281	2	487.271293	972.528032	0.32795	0.0001598	-0.63211	-0.00030801	-0.30416	-0.00014821	487.27102038575606	96.087	0.74654	95.059	94.764	95.51	-1.0281					23	14	2	0	0	0	0.028476	1	8623	8623		35.201	13.241	1	10200			19548	34894	15944	15967	21646	21646					0.04066955557300389
ILTIVGEFD	9	Unmodified	_ILTIVGEFD_					0	0	0			REV__tr|A0A7D6VNJ8|A0A7D6VNJ8_9CLOTPhageportalproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13195PE=4SV=1	REV__tr|A0A7D6VNJ8|A0A7D6VNJ8_9CLOTPhageportalproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13195PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.8152770996094	2	503.776408	1005.53826	0.73899	0.00037229	1.7825	0.00089796	2.5214	0.0012702	503.7771953819343	158.82	0.43423	158.82	158.51	158.94	0					15	8	2	0	0	0	0.027462	1	18604	18604		38.806	22.101	1	47201	+		19549	31187	15945	15968	21647	21647					0.03571518491855841
ILTKADTLSM	10	Unmodified	_ILTKADTLSM_					0	0	0			REV__nc|ENSG00000104067|Q07157-2|TJP1	REV__nc|ENSG00000104067|Q07157-2|TJP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.2779541015625	2	546.8021	1091.58965	1.8029	0.00098581	-0.73453	-0.00040164	1.0683	0.00058417	546.802107327843	128.55	0.46927	128.55	128.32	128.79	0					13	9	2	0	0	0	0.026782	1	14875	14875		45.972	10.82	1	33342	+		19550	17643	15946	15969	21648	21648					0.04751519194269349
ILTKEIIGELI	11	Unmodified	_ILTKEIIGELI_					0	0	0			REV__L1PB1_dup435|chr1:148902763-148905178:-|1.8547645190966555|0.2878265206874703|2.69|429.0|42|2|sense	REV__L1PB1_dup435|chr1:148902763-148905178:-|1.8547645190966555|0.2878265206874703|2.69|429.0|42|2|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	621.39208984375	2	621.389396	1240.76424	-0.77596	-0.00048217	0.67933	0.00042213	-0.096628	-6.0043E-05	621.3897563259786	106.38	0.71716	104.36	104.05	104.77	-2.0161					39	13	4	0	0	0	0.70142	1	9689	9689		29.17	1.0886	1	185110	+		19551	28588	15947	15970	21649	21649					0.15348842611115288
ILTKILYLL	9	Unmodified	_ILTKILYLL_					0	0	0		nc|ENSG00000158623|Q9UBF2-2|COPG2;ENSG00000158623|ENST00000425248|COPG2	nc|ENSG00000158623|Q9UBF2-2|COPG2	nc|ENSG00000158623|Q9UBF2-2|COPG2	MULTI-MSMS	OvCa99_classI_Rep5	1	545.3703002929688	2	545.367736	1088.72092	0.54525	0.00029736	1.7202	0.00093812	2.2654	0.0012355	545.3684828742337	140.79	1.7901	140.79	140.44	142.23	0					90	35	4	0	0	0	0.091859	2	16456	16434;16456		99.375	0	1	302140			19552	5965	15948	15971	21650;21651	21651					0.1801069762448151
ILTLERSLL	9	Unmodified	_ILTLERSLL_					0	0	0			REV__ENSG00000154165|ENST00000284311|GPR15	REV__ENSG00000154165|ENST00000284311|GPR15	MULTI-MSMS	OvCa9_classI_Rep3	3	529.3336791992188	2	529.334424	1056.6543	1.2484	0.0006608	-0.61448	-0.00032526	0.63388	0.00033554	529.3335476420067	123.24	1.3997	122.2	121.89	123.29	-1.0377					61	26	4	0	0	0	0.44568	1	9518	9518		47.657	0	1	115190	+		19553	20363	15949	15972	21652	21652					0.12823462062578983
ILTLRPAAMM	10	Oxidation (M)	_ILTLRPAAM(Oxidation (M))M_		ILTLRPAAM(0.998)M(0.002)		ILTLRPAAM(27)M(-27)	0	0	1		ENST00000395756.5_1_17:17715494-17715812:-|nuORF	ENST00000395756.5_1_17:17715494-17715812:-|nuORF	ENST00000395756.5_1_17:17715494-17715812:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	566.8154907226562	2	566.814487	1131.61442	-0.24812	-0.00014064	2.5122	0.001424	2.2641	0.0012833	566.8159504694337	109.72	2.4602	108.58	108.24	110.71	-1.1444					116	47	3	0	0	0	0.24387	2	7880	7880;7895		87.754	18.967	2	1478800			19554	11298	15950	15973	21653;21654	21653		319;320			0.05387875795963737
ILTLRPAAMM	10	Oxidation (M)	_ILTLRPAAMM(Oxidation (M))_		ILTLRPAAM(0.033)M(0.967)		ILTLRPAAM(-15)M(15)	0	0	1		ENST00000395756.5_1_17:17715494-17715812:-|nuORF	ENST00000395756.5_1_17:17715494-17715812:-|nuORF	ENST00000395756.5_1_17:17715494-17715812:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.8162231445312	2	566.814487	1131.61442	1.6155	0.00091566	0.55291	0.0003134	2.1684	0.0012291	566.8149073889535	110.19	2.7767	108.59	108.28	111.06	-1.6011					118	52	4	0	0	0	0.46756	1	10124	10124		58.782	9.3404	2	1542500			19555	11298	15950	15973	21655	21655		319;320			0.05387875795963737
ILTLRSSIDD	10	Unmodified	_ILTLRSSIDD_					0	0	0			REV__ENSG00000197653|ENST00000673944|DNAH10	REV__ENSG00000197653|ENST00000673944|DNAH10	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.8162231445312	2	566.814053	1131.61355	1.6155	0.00091566	1.3189	0.0007476	2.9344	0.0016633	566.8149073889535	110.19	2.7767	108.59	108.28	111.06	-1.6011					118	52	4	0	0	0	0.55359	1	10136	10136		47.657	3.5405	1	1542500	+		19556	22941	15951	15974	21656	21656					0.05301075952274914
ILTLSNSSH	9	Unmodified	_ILTLSNSSH_					0	0	0		nc|ENSG00000118702|P01286-2|GHRH;ENSG00000118702|ENST00000373614|GHRH	nc|ENSG00000118702|P01286-2|GHRH	nc|ENSG00000118702|P01286-2|GHRH	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.29296875	2	486.261456	970.50836	-1.4497	-0.00070494	3.5211	0.0017122	2.0714	0.0010072	486.2625268602371	82.427	0.5916	80.13	79.938	80.53	-2.2963					19	11	2	0	0	0	0.027462	1	4671	4671		29.15	0	1	47699			19557	3321	15952	15975	21657	21657					0.02192579546522211
ILTNVIWVWVK	11	Unmodified	_ILTNVIWVWVK_					0	0	0		ENST00000533105.1_1_11:47600795-47602306:+|nuORF	ENST00000533105.1_1_11:47600795-47602306:+|nuORF	ENST00000533105.1_1_11:47600795-47602306:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	457.60791015625	3	457.611341	1369.81219	-6.2055	-0.0028397	-0.79343	-0.00036308	-6.999	-0.0032028	457.6108688134911	157.03	3.4081	155.86	154.91	158.32	-1.1707					147	80	2	0	0	0	0.72466	1	13494	13494		20.03	0	1	68588			19558	13335	15953	15976	21658	21658					0.14207961321790208
ILTQFWTTS	9	Unmodified	_ILTQFWTTS_					0	0	0			REV__ENSG00000123643|ENST00000243389|SLC36A1	REV__ENSG00000123643|ENST00000243389|SLC36A1	MULTI-SECPEP	OvCa9_classI_Rep2	2	547.842529296875	2	548.787307	1095.56006	0.67548	0.00037069	-4.1895	-0.0022991	-3.514	-0.0019284	548.784718901647	71.842	1.0458	69.334	68.858	69.903	-2.5071					46	19	3	0	0	0	0.027462	1	5751	5751		30.504	4.9296	1	106230	+		19559	18652	15954	15977	21659	21659					0.016103232404248047
ILTRADDEDK	10	Unmodified	_ILTRADDEDK_					0	0	0		tr|A0A553STQ4|A0A553STQ4_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05555PE=4SV=1	tr|A0A553STQ4|A0A553STQ4_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05555PE=4SV=1	tr|A0A553STQ4|A0A553STQ4_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05555PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	588.2973022460938	2	588.298767	1174.58298	-0.12574	-7.3971E-05	-2.3111	-0.0013596	-2.4368	-0.0014336	588.2970977003064	86.655	1.6797	85.224	84.751	86.431	-1.4311					103	32	5	0	0	0	0.45822	1	7529	7529		60.118	3.6845	1	558380			19560	34518	15955	15978	21660	21660					0.002672975672112443
ILTRLSLEI	9	Unmodified	_ILTRLSLEI_					0	0	0		tr|A0A7D6VRB2|A0A7D6VRB2_9CLOTDUF1659domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18715PE=4SV=1	tr|A0A7D6VRB2|A0A7D6VRB2_9CLOTDUF1659domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18715PE=4SV=1	tr|A0A7D6VRB2|A0A7D6VRB2_9CLOTDUF1659domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18715PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.268798828125	2	529.334424	1056.6543	-0.60302	-0.0003192	-1.9915	-0.0010542	-2.5945	-0.0013733	529.3330024281732	112.41	0.65826	110.9	110.69	111.34	-1.5111					22	12	2	0	0	0	0.027418	1	10374	10374		71.877	14.425	1	17101			19561	34910	15956	15979	21661	21661					0.12823462062578983
ILTRLSLEI	9	Unmodified	_ILTRLSLEI_					0	0	0		tr|A0A7D6VRB2|A0A7D6VRB2_9CLOTDUF1659domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18715PE=4SV=1	tr|A0A7D6VRB2|A0A7D6VRB2_9CLOTDUF1659domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18715PE=4SV=1	tr|A0A7D6VRB2|A0A7D6VRB2_9CLOTDUF1659domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18715PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	529.334424	1056.6543	-0.32335	-0.00017116	-1.2253	-0.00064862	-1.5487	-0.00081978	529.333214153075	111.06	0.59164	110.92	110.73	111.32	-0.13961	0.012581	0.00043436	NaN	71.877	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11961			19562	34910	15956	15979							0.12823462062578983
ILTSGNIP	8	Unmodified	_ILTSGNIP_					0	0	0		nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-MSMS	OvCa9_classI_Rep4_	4	407.73773193359375	2	407.737086	813.459619	0.43828	0.0001787	-0.19168	-7.8156E-05	0.2466	0.00010055	407.73689363862377	69.706	1.0234	66.225	65.91	66.934	-3.4812					51	20	3	0	0	0	0.62474	1	5240	5240		58.782	0.97068	1	716350			19563	3916	15957	15980	21662	21662					0.04542710977432307
ILTSLTFTLPY	11	Unmodified	_ILTSLTFTLPY_					0	0	0		ENSG00000197309|ENST00000641351|OR10D3	ENSG00000197309|ENST00000641351|OR10D3	ENSG00000197309|ENST00000641351|OR10D3	MULTI-MSMS	OvCa99_classI_Rep5	1	634.8603515625	2	634.860472	1267.70639	3.005	0.0019077	-4.0645	-0.0025804	-1.0595	-0.00067263	634.8578519189956	96.212	1.2662	96.212	95.913	97.18	0					87	29	5	0	0	0	0.43234	2	10534	10511;10534		58.782	5.8453	1	13132000			19564	8698	15958	15981	21663;21664	21664					0.0832458068566666
ILTSLTFTLPY	11	Unmodified	_ILTSLTFTLPY_					0	0	0		ENSG00000197309|ENST00000641351|OR10D3	ENSG00000197309|ENST00000641351|OR10D3	ENSG00000197309|ENST00000641351|OR10D3	MULTI-MSMS	OvCa9_classI_Rep2	2	634.8589477539062	2	634.860472	1267.70639	-0.66778	-0.00042395	-2.9986	-0.0019037	-3.6664	-0.0023276	634.8585524737888	96.166	2.5594	95.138	94.813	97.373	-1.0281					149	51	5	0	0	0	0.48738	1	8699	8699		54.776	0	1	1938200			19565	8698	15958	15981	21665	21665					0.0832458068566666
ILTSVNHR	8	Unmodified	_ILTSVNHR_					0	0	0		ENSG00000126870|ENST00000407559|DYNC2I1	ENSG00000126870|ENST00000407559|DYNC2I1	ENSG00000126870|ENST00000407559|DYNC2I1	MULTI-MSMS	OvCa9_classI_Rep3	3	470.27197265625	2	470.272158	938.529764	-3.0901	-0.0014532	3.1911	0.0015007	0.10101	4.7502E-05	470.2736065998923	146.16	1.8917	145.2	144.4	146.29	-0.95947					80	37	4	0	0	0	0.74971	1	12272	12272		26.796	2.2921	1	264540			19566	3808	15959	15982	21666	21666					0.05804009365908769
ILTSVSSLRGT	11	Unmodified	_ILTSVSSLRGT_					0	0	0		ENST00000498186.5_1_7:148514900-148581332:-|nuORF;nc|ENSG00000106462|Q15910-3|EZH2;nc|ENSG00000106462|Q15910|EZH2;ENSG00000106462|ENST00000320356|EZH2	ENST00000498186.5_1_7:148514900-148581332:-|nuORF	ENST00000498186.5_1_7:148514900-148581332:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3287963867188	2	567.32987	1132.64519	-0.48412	-0.00027465	0.44281	0.00025122	-0.04131	-2.3437E-05	567.3299446868054	145.54	4.8872	144.11	142.68	147.57	-1.4357					247	95	4	0	0	0	0.68021	1	14380	14380		36.447	0	1	208760			19567	2554	15960	15983	21667	21667					0.08417068706262398
ILTTALEEEK	10	Unmodified	_ILTTALEEEK_					0	0	0		tr|A0A7D6VRB8|A0A7D6VRB8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_00960PE=4SV=1	tr|A0A7D6VRB8|A0A7D6VRB8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_00960PE=4SV=1	tr|A0A7D6VRB8|A0A7D6VRB8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_00960PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	573.816650390625	2	573.816261	1145.61797	-1.3063	-0.00074959	2.2941	0.0013164	0.98773	0.00056678	573.8174474200665	59.625	2.0984	56.845	56.241	58.34	-2.7801					98	39	4	0	0	0	0.6104	1	4356	4356		40.778	3.6191	1	469370			19568	34913	15961	15984	21668	21668					0.05098540375183802
ILTTLKDL	8	Unmodified	_ILTTLKDL_					0	0	0			REV__tr|A0A7D6ZF91|A0A7D6ZF91_9CLOTFlagellarhook-lengthcontrolproteinFliKOS=ClostridiumintestinaleOX=36845GN=HZF06_16855PE=4SV=1	REV__tr|A0A7D6ZF91|A0A7D6ZF91_9CLOTFlagellarhook-lengthcontrolproteinFliKOS=ClostridiumintestinaleOX=36845GN=HZF06_16855PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.787841796875	2	458.789318	915.564084	-2.1404	-0.00098197	-0.94151	-0.00043196	-3.0819	-0.0014139	458.78877967166295	148.29	2.0994	146.85	146.22	148.32	-1.435					112	42	4	0	0	0	0.73938	1	14631	14631		31.955	5.1588	1	1351300	+		19569	31961	15962	15985	21669	21669					0.10292412734145273
ILTVGVGANIF	11	Unmodified	_ILTVGVGANIF_					0	0	0		DMXL2|p.P2585Efs*17|1|0.03|ENSG00000104093|chr15:51464727-51464728|-/CTGAGATTGCACCACTGCTC|frameshift_variant;DMXL2|p.P2585Lfs*7|1|0.03|ENSG00000104093|chr15:51464726-51464727|-/A|frameshift_variant;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2	DMXL2|p.P2585Efs*17|1|0.03|ENSG00000104093|chr15:51464727-51464728|-/CTGAGATTGCACCACTGCTC|frameshift_variant;nc|ENSG00000104093|Q8TDJ6|DMXL2	nc|ENSG00000104093|Q8TDJ6|DMXL2	MULTI-MSMS	OvCa99_classI_Rep5	1	552.3272705078125	2	552.326599	1102.63865	1.6775	0.00092655	0.32344	0.00017865	2.001	0.0011052	552.3264464888206	128.04	0.46581	128.04	127.81	128.28	0					16	9	2	0	0	0	0.60323	1	14834	14834		44.377	1.981	1	111530			19570	2352;744	15963	15986	21670	21670					0.09143175545523263
ILTVLMKSN	9	Unmodified	_ILTVLMKSN_					0	0	0		ENST00000306999.6_1_7:16640510-16640558:-|nuORF	ENST00000306999.6_1_7:16640510-16640558:-|nuORF	ENST00000306999.6_1_7:16640510-16640558:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.80322265625	2	509.801903	1017.58925	2.0238	0.0010317	1.6092	0.00082039	3.633	0.0018521	509.80258654056354	136.53	4.9049	134.99	133.61	138.51	-1.5437					290	101	5	0	0	0	0.62352	1	13313	13313		29.15	0	1	173450			19571	10250	15964	15987	21671	21671					0.08116144265079583
ILTVPETQSL	10	Unmodified	_ILTVPETQSL_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa99_classI_Rep5	1	550.8179931640625	2	550.813522	1099.61249	2.4269	0.0013368	3.2912	0.0018128	5.7181	0.0031496	550.8153288548965	89.255	1.2638	89.255	88.922	90.186	0					58	30	2	0	0	0	0.53885	1	9557	9557		49.442	0	1	20000000	+		19572	28942;32737	15965	15988	21672	21672					0.06666861583403261
ILTYVAWKL	9	Unmodified	_ILTYVAWKL_					0	0	0		ENSG00000171989|ENST00000307144|LDHAL6B;ENSG00000166800|ENST00000280706|LDHAL6A	ENSG00000171989|ENST00000307144|LDHAL6B	ENSG00000171989|ENST00000307144|LDHAL6B	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8330078125	2	553.83406	1105.65357	-6.2881	-0.0034826	-0.80638	-0.0004466	-7.0945	-0.0039292	553.8333711088012	162.92	1.2582	161.29	160.56	161.82	-1.6336					55	36	2	0	0	0	0.6653	1	16084	16084		24.203	0	1	44362			19573	7257	15966	15989	21673	21673					0.10496667413508476
ILVAGDRR	8	Unmodified	_ILVAGDRR_					0	0	0		nc|ENSG00000109790|Q96PQ7-5|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	MULTI-MSMS	OvCa9_classI_Rep3	3	450.2739562988281	2	450.274701	898.534849	-3.7498	-0.0016884	3.5683	0.0016067	-0.18149	-8.172E-05	450.27623858459356	147.83	1.7988	146.88	146.5	148.3	-0.95119					100	35	5	0	0	0	0.74971	1	12474	12474		26.796	0	1	751980			19574	2735	15967	15990	21674	21674					0.08152313228515595
ILVARRLAL	9	Unmodified	_ILVARRLAL_					0	0	0			REV__ENST00000489585.5_1_1:236046752-236046905:-|nuORF	REV__ENST00000489585.5_1_1:236046752-236046905:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.2960815429688	2	512.853119	1023.69168	2.2116	0.0011342	-1.2426	-0.00063725	0.969	0.00049696	512.8526892288243	97.097	0.21326	97.097	96.966	97.18	0					7	4	2	0	0	0	0.027462	1	10658	10658		19.36	2.8868	1	125180	+		19575	26643	15968	15991	21675	21675					0.18078598118836453
ILVASLGAYR	10	Unmodified	_ILVASLGAYR_					0	0	0			REV__ENSG00000039987|ENST00000553030|BEST2	REV__ENSG00000039987|ENST00000553030|BEST2	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8167114257812	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.70152	1	11453	11453		30.318	3.6248	1	178650	+		19576	16625	15969	15992	21676	21676					0.09498308748334239
ILVDTVWAL	9	Unmodified	_ILVDTVWAL_					0	0	0		ENSG00000102753|ENST00000261667|KPNA3;ENSG00000186432|ENST00000334256|KPNA4;KPNA3|p.L334Ifs*9|1|0.85|ENSG00000102753|chr13:49709600-49709604|AAGAG/-|frameshift_variant	ENSG00000102753|ENST00000261667|KPNA3	ENSG00000102753|ENST00000261667|KPNA3	MULTI-MSMS	OvCa99_classI_Rep5	1	515.3042602539062	2	515.302593	1028.59063	0.50298	0.00025919	1.1829	0.00060954	1.6859	0.00086873	515.3030287606078	159.46	1.021	159.46	159.14	160.16	0					44	20	3	0	0	0	0.057208	3	18697	18678;18697;18723		114.59	37.812	1	321290			19577	2251	15970	15993	21677;21678;21679	21678					0.07748101625475101
ILVEFTREV	9	Unmodified	_ILVEFTREV_					0	0	0		HYOU1|p.Q990Rfs*5|1|0.05|ENSG00000149428|chr11:119045626-119045626|T/-|frameshift_variant;ENSG00000149428|ENST00000617285|HYOU1;nc|ENSG00000149428|Q9Y4L1-2|HYOU1;ENST00000543287.5_1_11:118919950-118926831:-|nuORF	HYOU1|p.Q990Rfs*5|1|0.05|ENSG00000149428|chr11:119045626-119045626|T/-|frameshift_variant	HYOU1|p.Q990Rfs*5|1|0.05|ENSG00000149428|chr11:119045626-119045626|T/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.7364501953125	2	553.316232	1104.61791	1.7832	0.00098668	0.6482	0.00035866	2.4314	0.0013453	553.3162719425283	106	0.87499	106	105.44	106.32	0					37	19	3	0	0	0	0.027462	1	11934	11934		23.042	0	1	388480			19578	5458	15971	15994	21680	21680					0.06978585165848017
ILVEGKTI	8	Unmodified	_ILVEGKTI_					0	0	0		tr|A0A7D6ZFU1|A0A7D6ZFU1_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19310PE=4SV=1	tr|A0A7D6ZFU1|A0A7D6ZFU1_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19310PE=4SV=1	tr|A0A7D6ZFU1|A0A7D6ZFU1_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19310PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.7748718261719	2	436.776211	871.537869	-0.44072	-0.00019249	-2.8293	-0.0012358	-3.27	-0.0014283	436.7748691455194	144.87	2.2884	143.44	143.04	145.33	-1.4357					111	43	5	0	0	0	0.67745	2	14222	14210;14222		47.916	7.343	1	1417100			19579	35524	15972	15995	21681;21682	21682					0.09696143562666748
ILVERKAE	8	Unmodified	_ILVERKAE_					0	0	0		tr|A0A553SQ75|A0A553SQ75_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_22305PE=4SV=1	tr|A0A553SQ75|A0A553SQ75_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_22305PE=4SV=1	tr|A0A553SQ75|A0A553SQ75_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_22305PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	479.29058837890625	2	479.290017	956.565481	0.48542	0.00023266	-0.92112	-0.00044148	-0.4357	-0.00020882	479.28944941406894	42.946	1.3362	40.237	39.917	41.253	-2.7097					73	26	4	0	0	0	0.62474	2	2362	2362;2388		58.782	5.8453	1	745960			19580	34128	15973	15996	21683;21684	21683					0.0854604682289164
ILVGLLHMV	9	Unmodified	_ILVGLLHMV_					0	0	0		ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	ENSG00000123353|ENST00000243045|ORMDL2	MULTI-MSMS	OvCa99_classI_Rep5	1	497.8100891113281	2	497.809531	993.604509	0.78257	0.00038957	0.70087	0.0003489	1.4834	0.00073847	497.8099979459528	131.84	1.4588	131.84	131.62	133.08	0					44	30	3	0	0	0	0.14417	1	15343	15343		85.909	30.405	1	223190			19581	3590	15974	15997	21685	21685					0.10745055852908081
ILVGWLLV	8	Unmodified	_ILVGWLLV_					0	0	0		nc|ENSG00000166473|Q7Z442-2|PKD1L2;nc|ENSG00000166473|Q7Z442|PKD1L2;ENST00000533478.5_1_16:81157348-81174942:-|nuORF	nc|ENSG00000166473|Q7Z442-2|PKD1L2	nc|ENSG00000166473|Q7Z442-2|PKD1L2	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.7967224121094	2	456.799489	911.584425	-0.12564	-5.7391E-05	-4.1688	-0.0019043	-4.2944	-0.0019617	456.7973973039951	116.92	1.1001	115.55	115.19	116.29	-1.3645					42	20	3	0	0	0	0.58426	1	10925	10925		67.327	7.0332	1	84175			19582	15156	15975	15998	21686	21686					0.125096281846254
ILVILTSN	8	Unmodified	_ILVILTSN_					0	0	0			REV__ENSG00000174914|ENST00000642097|OR9G1	REV__ENSG00000174914|ENST00000642097|OR9G1	MULTI-MSMS	OvCa9_classI_Rep2	2	436.7747497558594	2	436.776211	871.537869	-1.3218	-0.00057733	-1.7819	-0.0007783	-3.1037	-0.0013556	436.77534043072393	144.04	2.131	143.81	143.2	145.33	-0.22697					119	42	4	0	0	0	0.73626	4	14480	14450;14480;14492;14522		33.516	8.0654	1	537180	+		19583	21858	15976	15999	21687;21688;21689;21690	21688					0.0969614356265538
ILVILTSN	8	Unmodified	_ILVILTSN_					0	0	0			REV__ENSG00000174914|ENST00000642097|OR9G1	REV__ENSG00000174914|ENST00000642097|OR9G1	MULTI-MSMS	OvCa9_classI_Rep3	3	436.7743225097656	2	436.776211	871.537869	-2.6718	-0.001167	-0.40157	-0.0001754	-3.0734	-0.0013424	436.7759504548302	144.44	1.6886	143.47	143.1	144.79	-0.97299					107	33	5	0	0	0	0.73626	4	12035	12035;12041;12071;12089		33.516	8.0654	1	989010	+		19584	21858	15976	15999	21691;21692;21693;21694	21691					0.0969614356265538
ILVILTSN	8	Unmodified	_ILVILTSN_					0	0	0			REV__ENSG00000174914|ENST00000642097|OR9G1	REV__ENSG00000174914|ENST00000642097|OR9G1	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.77490234375	2	436.776211	871.537869	-0.44072	-0.00019249	-2.8293	-0.0012358	-3.27	-0.0014283	436.7748691455194	144.87	2.2884	143.44	143.04	145.33	-1.4357					111	43	5	0	0	0	0.73626	1	14234	14234		33.516	1.5607	1	1417100	+		19585	21858	15976	15999	21695	21695					0.0969614356265538
ILVIVNSA	8	Unmodified	_ILVIVNSA_					0	0	0		L1MB3_dup1513|chr1:246270299-246273131:-|1.1805691521590191|0.3959605958472513|1.58|429.0|147|2|anti-sense	L1MB3_dup1513|chr1:246270299-246273131:-|1.1805691521590191|0.3959605958472513|1.58|429.0|147|2|anti-sense	L1MB3_dup1513|chr1:246270299-246273131:-|1.1805691521590191|0.3959605958472513|1.58|429.0|147|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	414.7616882324219	2	414.763104	827.511654	-0.47497	-0.000197	-2.6059	-0.0010808	-3.0808	-0.0012778	414.761930419043	140.08	2.1671	139.86	139.4	141.57	-0.22696					123	43	4	0	0	0	0.73288	4	14006	14006;14024;14048;14060		35.201	5.3592	1	474850			19586	14593	15977	16000	21696;21697;21698;21699	21696					0.09099874391176854
ILVIVNSA	8	Unmodified	_ILVIVNSA_					0	0	0		L1MB3_dup1513|chr1:246270299-246273131:-|1.1805691521590191|0.3959605958472513|1.58|429.0|147|2|anti-sense	L1MB3_dup1513|chr1:246270299-246273131:-|1.1805691521590191|0.3959605958472513|1.58|429.0|147|2|anti-sense	L1MB3_dup1513|chr1:246270299-246273131:-|1.1805691521590191|0.3959605958472513|1.58|429.0|147|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	414.7617492675781	2	414.763104	827.511654	-1.3763	-0.00057084	-1.7682	-0.00073337	-3.1445	-0.0013042	414.7623056204016	140.83	3.4972	139.8	137.66	141.16	-1.0339					138	70	4	0	0	0	0.74971	1	11609	11609		26.796	0	1	1080700			19587	14593	15977	16000	21700	21700					0.09099874391176854
ILVKELTT	8	Unmodified	_ILVKELTT_					0	0	0		ENSG00000137265|ENST00000380956|IRF4;nc|ENSG00000137265|Q15306-2|IRF4	ENSG00000137265|ENST00000380956|IRF4	ENSG00000137265|ENST00000380956|IRF4	MULTI-MSMS	OvCa9_classI_Rep2	2	458.7875061035156	2	458.789318	915.564084	-2.0925	-0.00096003	-0.91741	-0.0004209	-3.0099	-0.0013809	458.7887619770069	147.55	1.9467	147.32	146.82	148.77	-0.22697					104	38	4	0	0	0	0.75241	3	14877	14877;14894;14957		25.45	6.0902	1	613710			19588	4571	15978	16001	21701;21702;21703	21701					0.10292412734122536
ILVKELTT	8	Unmodified	_ILVKELTT_					0	0	0		ENSG00000137265|ENST00000380956|IRF4;nc|ENSG00000137265|Q15306-2|IRF4	ENSG00000137265|ENST00000380956|IRF4	ENSG00000137265|ENST00000380956|IRF4	MULTI-MSMS	OvCa9_classI_Rep3	3	458.78765869140625	2	458.789318	915.564084	-3.9056	-0.0017918	0.66227	0.00030384	-3.2433	-0.001488	458.7895332206503	147.83	2.1995	146.88	146.25	148.45	-0.9512					131	43	4	0	0	0	0.75241	5	12461	12461;12473;12499;12512;12518		25.45	3.7478	1	949810			19589	4571	15978	16001	21704;21705;21706;21707;21708	21704					0.10292412734122536
ILVKELTT	8	Unmodified	_ILVKELTT_					0	0	0		ENSG00000137265|ENST00000380956|IRF4;nc|ENSG00000137265|Q15306-2|IRF4	ENSG00000137265|ENST00000380956|IRF4	ENSG00000137265|ENST00000380956|IRF4	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.78778076171875	2	458.789318	915.564084	-2.1404	-0.00098197	-0.94151	-0.00043196	-3.0819	-0.0014139	458.78877967166295	148.29	2.0994	146.85	146.22	148.32	-1.435					112	42	4	0	0	0	0.73938	1	14667	14667		31.955	6.5047	1	1351300			19590	4571	15978	16001	21709	21709					0.10292412734122536
ILVKHLEK	8	Unmodified	_ILVKHLEK_					0	0	0		tr|A0A7D7A2Q6|A0A7D7A2Q6_9CLOTZ1domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09480PE=4SV=1	tr|A0A7D7A2Q6|A0A7D7A2Q6_9CLOTZ1domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09480PE=4SV=1	tr|A0A7D7A2Q6|A0A7D7A2Q6_9CLOTZ1domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09480PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.3365783691406	2	490.318577	978.622602	2.3306	0.0011427	1.9116	0.00093727	4.2422	0.00208	490.3199034224754	137.21	0.95563	135.66	135.32	136.28	-1.5436					24	19	2	0	0	0	0.028476	1	13347	13347		55.504	2.1528	1	53808			19591	36088	15979	16002	21710	21710					0.13243514099281128
ILVKHLTNV	9	Unmodified	_ILVKHLTNV_					0	0	0		ENST00000506020.5_1_4:148867718-148993229:+|nuORF;ENSG00000071205|ENST00000336498|ARHGAP10	ENST00000506020.5_1_4:148867718-148993229:+|nuORF	ENST00000506020.5_1_4:148867718-148993229:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	518.8308715820312	2	518.829309	1035.64407	-0.22222	-0.00011529	0.044029	2.2844E-05	-0.17819	-9.2448E-05	518.8291897750204	62.438	1.3314	62.438	62.165	63.496	0					82	32	4	0	0	0	0.025955	2	5580	5548;5580		139.97	38.37	1	6326700			19592	1448	15980	16003	21711;21712	21712					0.12766899127996112
ILVKHRTGVGK	11	Unmodified	_ILVKHRTGVGK_					0	0	0			REV__ANXA1|p.A295V|1|0.06|ENSG00000135046|chr9:73169054-73169054|C/T|missense_variant	REV__ANXA1|p.A295V|1|0.06|ENSG00000135046|chr9:73169054-73169054|C/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	404.2439270019531	3	403.259302	1206.75608	1.6521	0.00066624	-1.4169	-0.00057138	0.23523	9.486E-05	403.2585536482392	21.082	1.0236	19.744	19.5	20.523	-1.3386					34	20	3	0	0	0	0.025864	1	145	145		17.167	0	1	30333	+		19593	15639	15981	16004	21713	21713					0.1609675320498809
ILVKILLKG	9	Unmodified	_ILVKILLKG_					0	0	0			REV__tr|A0A7D6ZKC4|A0A7D6ZKC4_9CLOTLacIfamilyDNA-bindingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13805PE=4SV=1	REV__tr|A0A7D6ZKC4|A0A7D6ZKC4_9CLOTLacIfamilyDNA-bindingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13805PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.33502197265625	2	498.862621	995.710688	-1.7596	-0.00087778	-0.37347	-0.00018631	-2.133	-0.0010641	498.8615813639984	125.11	0.26276	123.71	123.59	123.86	-1.3908					6	4	2	0	0	0	0.027462	1	11869	11869		24.203	0	1	6078.6	+		19594	32105	15982	16005	21714	21714					0.2126613468991536
ILVKPKADV	9	Unmodified	_ILVKPKADV_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A;POLR1A|p.I816Afs*8|1|0.08|ENSG00000068654|chr2:86049190-86049191|-/GTGGGGATAAATGCATGCA|frameshift_variant;POLR1A|p.E867Afs*9|1|0.15|ENSG00000068654|chr2:86048918-86048919|-/G|frameshift_variant	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.8007507324219	2	491.81841	981.622267	-1.1805	-0.00058059	1.8764	0.00092285	0.6959	0.00034226	491.8191118746188	108.52	1.0577	106.79	106.42	107.47	-1.7256					33	20	2	0	0	0	0.027462	1	9915	9915		38.806	13.232	1	50057			19595	1394	15983	16006	21715	21715					0.13072094379413102
ILVLDLMVTF	10	Unmodified	_ILVLDLMVTF_					0	0	0			REV__ENSG00000184698|ENST00000642046|OR51M1	REV__ENSG00000184698|ENST00000642046|OR51M1	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.8053588867188	2	582.340861	1162.66717	2.2856	0.001331	-2.4152	-0.0014065	-0.12959	-7.5464E-05	582.3394645115247	94.228	0.64032	94.228	93.964	94.604	0					22	14	2	0	0	0	0.027056	1	10255	10255		27.882	6.9353	1	360700	+		19596	22446	15984	16007	21716	21716					0.0923415713043596
ILVLHLNRFSA	11	Unmodified	_ILVLHLNRFSA_					0	0	0		nc|ENSG00000143258|Q9UK80-3|USP21;ENSG00000143258|ENST00000368002|USP21;ENST00000487163.5_1_1:161134308-161135234:+|nuORF	nc|ENSG00000143258|Q9UK80-3|USP21	nc|ENSG00000143258|Q9UK80-3|USP21	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8818359375	2	641.885147	1281.75574	-4.6434	-0.0029805	0.6524	0.00041876	-3.991	-0.0025618	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.72459	1	15522	15522		20.947	0	1	543390			19597	5026	15985	16008	21717	21717					0.12613333485114708
ILVLQQQLKE	10	Unmodified	_ILVLQQQLKE_					0	0	0		ENSG00000146457|ENST00000621533|WTAP	ENSG00000146457|ENST00000621533|WTAP	ENSG00000146457|ENST00000621533|WTAP	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3690185546875	2	606.371538	1210.72852	-3.14	-0.001904	-0.05994	-3.6346E-05	-3.1999	-0.0019404	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.78463	1	15057	15057		20.947	0	1	257720			19598	5294	15986	16009	21718	21718					0.13158805154057518
ILVLRGGPIQ	10	Unmodified	_ILVLRGGPIQ_					0	0	0			REV__ENST00000477183.1_1_9:6492313-6492544:+|nuORF	REV__ENST00000477183.1_1_9:6492313-6492544:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	533.3402099609375	2	533.342584	1064.67061	-5.4486	-0.002906	1.332	0.00071043	-4.1166	-0.0021955	533.3431726379797	156.49	1.098	155.32	155.02	156.12	-1.1707					66	21	4	0	0	0	0.69986	1	13482	13482		30.504	10.507	1	385900	+		19599	26384	15987	16010	21719	21719					0.1408658801931324
ILVNVEKVLQT	11	Unmodified	_ILVNVEKVLQT_					0	0	0		tr|A0A553SMP8|A0A553SMP8_NIACIHADfamilyphosphataseOS=NialliacirculansOX=1397GN=CEQ21_23015PE=4SV=1	tr|A0A553SMP8|A0A553SMP8_NIACIHADfamilyphosphataseOS=NialliacirculansOX=1397GN=CEQ21_23015PE=4SV=1	tr|A0A553SMP8|A0A553SMP8_NIACIHADfamilyphosphataseOS=NialliacirculansOX=1397GN=CEQ21_23015PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	628.3838500976562	2	628.384645	1254.75474	-3.3027	-0.0020754	-0.32158	-0.00020207	-3.6243	-0.0022775	628.3842124119614	147.07	3.8366	146.85	145.03	148.87	-0.22696					134	76	2	0	0	0	0.69455	1	14850	14850		31.53	2.3598	1	131170			19600	33859	15988	16011	21720	21720					0.1375507432555878
ILVNVEKVLQT	11	Unmodified	_ILVNVEKVLQT_					0	0	0		tr|A0A553SMP8|A0A553SMP8_NIACIHADfamilyphosphataseOS=NialliacirculansOX=1397GN=CEQ21_23015PE=4SV=1	tr|A0A553SMP8|A0A553SMP8_NIACIHADfamilyphosphataseOS=NialliacirculansOX=1397GN=CEQ21_23015PE=4SV=1	tr|A0A553SMP8|A0A553SMP8_NIACIHADfamilyphosphataseOS=NialliacirculansOX=1397GN=CEQ21_23015PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	628.384645	1254.75474	-3.1957	-0.0020081	-0.88812	-0.00055808	-4.0838	-0.0025662	628.3836998757386	147.53	3.3919	146.58	144.61	148	-0.95119	-0.13621	-0.00054073	NaN	31.53	103	67	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103030			19601	33859	15988	16011							0.1375507432555878
ILVPGAGLGRL	11	Unmodified	_ILVPGAGLGRL_					0	0	0		ENSG00000156017|ENST00000376834|CARNMT1	ENSG00000156017|ENST00000376834|CARNMT1	ENSG00000156017|ENST00000376834|CARNMT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.3391723632812	2	533.342584	1064.67061	-6.1908	-0.0033018	1.9226	0.0010254	-4.2682	-0.0022764	533.3435201452669	156.94	1.5192	155.39	155.04	156.56	-1.545					135	41	5	0	0	0	0.72244	1	15499	15499		21.96	0	1	1621700			19602	5815	15989	16012	21721	21721					0.14086588019335977
ILVPISGLLL	10	Unmodified	_ILVPISGLLL_					0	0	0		tr|A0A553SPW6|A0A553SPW6_NIACILincomycineffluxMFStransporterLmr(B)OS=NialliacirculansOX=1397GN=lmr(B)PE=4SV=1	tr|A0A553SPW6|A0A553SPW6_NIACILincomycineffluxMFStransporterLmr(B)OS=NialliacirculansOX=1397GN=lmr(B)PE=4SV=1	tr|A0A553SPW6|A0A553SPW6_NIACILincomycineffluxMFStransporterLmr(B)OS=NialliacirculansOX=1397GN=lmr(B)PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	519.3516235351562	2	519.352086	1036.68962	-0.61402	-0.00031889	0.42633	0.00022141	-0.1877	-9.7481E-05	519.3521262310679	135.52	2.0644	134.41	134.06	136.13	-1.1076					107	41	4	0	0	0	0.39971	1	11006	11006		68.485	7.5128	1	301720			19603	34096	15990	16013	21722	21722					0.1727412459038078
ILVPKLVYDIV	11	Unmodified	_ILVPKLVYDIV_					0	0	0			REV__tr|A0A553SUG7|A0A553SUG7_NIACIFMNreductase(NADPH)OS=NialliacirculansOX=1397GN=ssuEPE=4SV=1	REV__tr|A0A553SUG7|A0A553SUG7_NIACIFMNreductase(NADPH)OS=NialliacirculansOX=1397GN=ssuEPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	636.398193359375	2	636.402307	1270.79006	-6.0266	-0.0038353	-0.08978	-5.7136E-05	-6.1164	-0.0038925	636.4021340969482	159.63	1.4705	158.02	157.73	159.2	-1.6101					96	32	4	0	0	0	0.69455	1	15764	15764		31.53	11.533	1	297970	+		19604	31074	15991	16014	21723	21723					0.165497368533579
ILVPSWHHWL	10	Unmodified	_ILVPSWHHWL_					0	0	0			REV__TMEM132D|p.K948Tfs*15|1|0.06|ENSG00000151952|chr12:129074331-129074332|TT/-|frameshift_variant	REV__TMEM132D|p.K948Tfs*15|1|0.06|ENSG00000151952|chr12:129074331-129074332|TT/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	644.3489990234375	2	644.353483	1286.69241	-4.6999	-0.0030284	-1.2393	-0.00079852	-5.9391	-0.0038269	644.3525813109911	156.61	0.94965	155.07	154.76	155.71	-1.545					72	28	3	0	0	0	0.75594	1	15478	15478		24.203	0.68005	1	115240	+		19605	20265	15992	16015	21724	21724					0.060533927678761756
ILVRPKNI	8	Unmodified	_ILVRPKNI_					0	0	0			REV__tr|A0A7D7A2E6|A0A7D7A2E6_9CLOTStageIIsporulationproteinPOS=ClostridiumintestinaleOX=36845GN=HZF06_16550PE=4SV=1	REV__tr|A0A7D7A2E6|A0A7D7A2E6_9CLOTStageIIsporulationproteinPOS=ClostridiumintestinaleOX=36845GN=HZF06_16550PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.2640686035156	2	476.818744	951.622936	-0.47947	-0.00022862	-0.24771	-0.00011811	-0.72719	-0.00034674	476.8185434616469	65.754	0.72639	62.268	62.034	62.761	-3.4854					22	14	2	0	0	0	0.028476	1	4773	4773		8.8223	0	1	56588	+		19606	32534	15993	16016	21725	21725					0.14518933819135782
ILVSATSLI	9	Unmodified	_ILVSATSLI_					0	0	0		ENSG00000185245|ENST00000329125|GP1BA	ENSG00000185245|ENST00000329125|GP1BA	ENSG00000185245|ENST00000329125|GP1BA	MULTI-MSMS	OvCa9_classI_Rep3	3	458.7869873046875	2	458.789318	915.564084	-3.9056	-0.0017918	0.66227	0.00030384	-3.2433	-0.001488	458.7895332206503	147.83	2.1995	146.88	146.25	148.45	-0.9512					131	43	4	0	0	0	0.59983	1	12479	12479		31.955	3.7006	1	949810			19607	8236	15994	16017	21726	21726					0.10292412734145273
ILVSDARLA	9	Unmodified	_ILVSDARLA_					0	0	0			REV__ENSG00000176058|ENST00000409012|TPRN	REV__ENSG00000176058|ENST00000409012|TPRN	MULTI-MSMS	OvCa9_classI_Rep3	3	479.2893981933594	2	479.290017	956.565481	-0.33467	-0.0001604	0.85312	0.00040889	0.51845	0.00024849	479.29029988395797	117.55	0.94048	116.51	116.24	117.18	-1.0324					43	18	3	0	0	0	0.33652	1	8858	8858		58.782	0.97068	1	249320	+		19608	21930	15995	16018	21727	21727					0.08546046822880271
ILVSFLRSI	9	Unmodified	_ILVSFLRSI_					0	0	0			REV__ENSG00000132429|ENST00000254765|POPDC3	REV__ENSG00000132429|ENST00000254765|POPDC3	MULTI-MSMS	OvCa99_classI_Rep5	1	524.3340454101562	2	524.331685	1046.64882	1.5859	0.00083155	-0.057214	-2.9999E-05	1.5287	0.00080155	524.3316062502239	128.82	0.79468	128.82	128.47	129.26	0					35	16	3	0	0	0	0.40667	1	14954	14954		51.335	0	1	299830	+		19609	19076	15996	16019	21728	21728					0.1273578327075029
ILVSGKTK	8	Unmodified	_ILVSGKTK_					0	0	0		ENSG00000122042|ENST00000380680|UBL3	ENSG00000122042|ENST00000380680|UBL3	ENSG00000122042|ENST00000380680|UBL3	MULTI-MSMS	OvCa9_classI_Rep2	2	423.2748718261719	2	423.276378	844.538203	-1.0746	-0.00045487	-1.9263	-0.00081535	-3.0009	-0.0012702	423.27545611036373	140.26	1.6211	140.03	139.45	141.07	-0.22696					84	32	4	0	0	0	0.7327	4	14056	14002;14050;14056;14080		12.959	3.4886	1	166850			19610	3515	15997	16020	21729;21730;21731;21732	21731					0.10971563282510033
ILVSISTAL	9	Unmodified	_ILVSISTAL_					0	0	0		tr|A0A553SGY9|A0A553SGY9_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_11795PE=3SV=1	tr|A0A553SGY9|A0A553SGY9_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_11795PE=3SV=1	tr|A0A553SGY9|A0A553SGY9_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_11795PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	458.78778076171875	2	458.789318	915.564084	-3.9056	-0.0017918	0.66227	0.00030384	-3.2433	-0.001488	458.7895332206503	147.83	2.1995	146.88	146.25	148.45	-0.9512					131	43	4	0	0	0	0.34496	1	12531	12531		57.811	9.8957	1	949810			19611	33210	15998	16021	21733	21733					0.10292412734122536
ILVSLLSRVPG	11	Unmodified	_ILVSLLSRVPG_					0	0	0			REV__ENST00000524930.1_1_6:130504375-130535627:-|nuORF	REV__ENST00000524930.1_1_6:130504375-130535627:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	577.3670654296875	2	577.368798	1152.72304	-6.9908	-0.0040363	3.1619	0.0018256	-3.8289	-0.0022107	577.3704843168063	161.9	1.6912	160.28	159.86	161.55	-1.6239					125	44	4	0	0	0	0.69808	1	16031	16031		30.318	1.1477	1	1020600	+		19612	27107	15999	16022	21734	21734					0.1527912636227029
ILVSLRQQISK	11	Unmodified	_ILVSLRQQISK_					0	0	0		ENSG00000276240|ENST00000641792|OR4E1	ENSG00000276240|ENST00000641792|OR4E1	ENSG00000276240|ENST00000641792|OR4E1	MULTI-SECPEP	OvCa9_classI_Rep2	2	642.8453979492188	2	642.903537	1283.79252	-1.5034	-0.00096656	-2.8946	-0.0018609	-4.398	-0.0028275	643.4021301131825	75.716	0.30869	73.862	73.788	74.096	-1.854					6	5	2	0	0	0	0.025701	1	6256	6256		16.717	0	1	10822			19613	9579	16000	16023	21735	21735					0.16197585311010698
ILVSRARPVW	10	Unmodified	_ILVSRARPVW_					0	0	0			REV__ENST00000478619.1_1_3:50375203-50378236:-|nuORF	REV__ENST00000478619.1_1_3:50375203-50378236:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.845947265625	2	598.866757	1195.71896	1.6201	0.00097021	-1.9163	-0.0011476	-0.29619	-0.00017738	599.3677599733702	147.53	0.23831	147.53	147.45	147.69	0					5	4	2	0	0	0	0.027228	1	17268	17268		16.473	0.83134	1	29804	+		19614	26417	16001	16024	21736	21736					0.12893081659240124
ILVSRDSF	8	Unmodified	_ILVSRDSF_					0	0	0			REV__ENSG00000196150|ENST00000417550|ZNF250	REV__ENSG00000196150|ENST00000417550|ZNF250	MULTI-SECPEP	OvCa9_classI_Rep3	3	468.30633544921875	2	468.761092	935.507631	-0.039026	-1.8294E-05	0.66388	0.0003112	0.62485	0.00029291	468.7612724431408	102.9	0.41742	101.38	101.15	101.57	-1.5211					11	7	2	0	0	0	0.028476	1	7092	7092		60.972	39.27	1	17036	+		19615	22790	16002	16025	21737	21737					0.037297848974731096
ILVSRLDP	8	Unmodified	_ILVSRLDP_					0	0	0		ENSG00000238243|ENST00000360358|OR2W3	ENSG00000238243|ENST00000360358|OR2W3	ENSG00000238243|ENST00000360358|OR2W3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.7983093261719	2	456.779285	911.544017	-0.72561	-0.00033144	0.77095	0.00035215	0.04534	2.0711E-05	456.77960165136017	106.52	0.71932	104.51	104.16	104.87	-2.0161					22	13	2	0	0	0	0.028476	1	9658	9658		90.777	24.973	1	21105			19616	9322	16003	16026	21738	21738					0.08470661794183343
ILVSSIYT	8	Unmodified	_ILVSSIYT_					0	0	0		tr|A0A7D6VPV0|A0A7D6VPV0_9CLOTDUF4003familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00295PE=4SV=1	tr|A0A7D6VPV0|A0A7D6VPV0_9CLOTDUF4003familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00295PE=4SV=1	tr|A0A7D6VPV0|A0A7D6VPV0_9CLOTDUF4003familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00295PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	448.25872802734375	2	448.260394	894.506234	0.91253	0.00040905	-3.8894	-0.0017435	-2.9769	-0.0013344	448.25856617736815	142.24	1.5311	142.01	141.52	143.05	-0.22696					82	30	4	0	0	0	0.69415	1	14238	14238		44.531	16.277	1	131560			19617	34801	16004	16027	21739	21739					0.05476150808715374
ILVSVPIVRN	10	Unmodified	_ILVSVPIVRN_					0	0	0			REV__tr|A0A7D6VYC6|A0A7D6VYC6_9CLOTHistidineproteinkinaseSaeSOS=ClostridiumintestinaleOX=36845GN=HZF06_16280PE=4SV=1	REV__tr|A0A7D6VYC6|A0A7D6VYC6_9CLOTHistidineproteinkinaseSaeSOS=ClostridiumintestinaleOX=36845GN=HZF06_16280PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	555.3539428710938	2	555.355691	1108.69683	-4.1933	-0.0023288	0.44804	0.00024882	-3.7453	-0.00208	555.3557970844861	158.57	1.1439	158.34	158.06	159.2	-0.22696					59	23	4	0	0	0	0.7759	1	16100	16100		21.96	2.8564	1	239990	+		19618	31816	16005	16028	21740	21740					0.14682857190814502
ILVSVPIVRN	10	Unmodified	_ILVSVPIVRN_					0	0	0			REV__tr|A0A7D6VYC6|A0A7D6VYC6_9CLOTHistidineproteinkinaseSaeSOS=ClostridiumintestinaleOX=36845GN=HZF06_16280PE=4SV=1	REV__tr|A0A7D6VYC6|A0A7D6VYC6_9CLOTHistidineproteinkinaseSaeSOS=ClostridiumintestinaleOX=36845GN=HZF06_16280PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	555.3536376953125	2	555.355691	1108.69683	-7.0233	-0.0039004	3.381	0.0018777	-3.6422	-0.0020227	555.3574443782504	158.85	1.8694	157.58	157.26	159.13	-1.267					85	36	5	0	0	0	0.73378	1	13745	13745		26.693	7.5894	1	417810	+		19619	31816	16005	16028	21741	21741					0.14682857190814502
ILVSWLPRL	9	Unmodified	_ILVSWLPRL_					0	0	0		ENSG00000173848|ENST00000355029|NET1;nc|ENSG00000173848|Q7Z628-2|NET1	ENSG00000173848|ENST00000355029|NET1	ENSG00000173848|ENST00000355029|NET1	MULTI-MSMS	OvCa99_classI_Rep5	1	548.8486938476562	2	548.847502	1095.68045	0.50049	0.00027469	1.4563	0.00079927	1.9568	0.001074	548.8482153842818	140.67	1.2327	140.67	140.35	141.59	0					64	24	4	0	0	0	0.036687	3	16430	16412;16430;16469		129.68	78.347	1	449520			19620	7421	16006	16029	21742;21743;21744	21743					0.13643776024696308
ILVTAPNLMMK	11	2 Oxidation (M)	_ILVTAPNLM(Oxidation (M))M(Oxidation (M))K_		ILVTAPNLM(1)M(1)K		ILVTAPNLM(41)M(41)K	0	0	2			REV__ENST00000569100.5_1_15:34845212-34845988:-|nuORF	REV__ENST00000569100.5_1_15:34845212-34845988:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	631.841552734375	2	631.845984	1261.67742	-1.1245	-0.00071052	-4.3296	-0.0027356	-5.4541	-0.0034462	631.8431300978218	127.18	1.1635	125.75	125.49	126.66	-1.4357					55	22	4	0	0	0	0.63561	1	12151	12151		41.427	8.6142	1	112280	+		19621	27721	16007	16030	21745	21745		618;619			0.05704396793385058
ILVTATVQKL	10	Unmodified	_ILVTATVQKL_					0	0	0			REV__ENSG00000136881|ENST00000259407|BAAT	REV__ENSG00000136881|ENST00000259407|BAAT	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.3465576171875	2	543.350074	1084.6856	-1.037	-0.00056347	0.41925	0.0002278	-0.61777	-0.00033567	543.3501392794037	65.394	1.6504	61.909	61.552	63.202	-3.4854					81	33	4	0	0	0	0.42082	1	4715	4715		65.465	1.2581	1	594830	+		19622	19419	16008	16031	21746	21746					0.1466403509666634
ILVTTLLTS	9	Unmodified	_ILVTTLLTS_					0	0	0			REV__nc|ENSG00000169876|Q685J3-2|MUC17	REV__nc|ENSG00000169876|Q685J3-2|MUC17	MULTI-MSMS	OvCa9_classI_Rep3	3	480.8004455566406	2	480.802426	959.590298	-4.4906	-0.0021591	1.5471	0.00074384	-2.9435	-0.0014153	480.8030459689351	151.04	2.008	150.08	149.7	151.71	-0.95647					103	39	4	0	0	0	0.6653	1	12901	12901		24.203	1.1603	1	1013500	+		19623	21490	16009	16032	21747	21747					0.10888681905623798
ILVVALSTT	9	Unmodified	_ILVVALSTT_					0	0	0		tr|A0A553SKC1|A0A553SKC1_NIACIStageVsporulationproteinBOS=NialliacirculansOX=1397GN=spoVBPE=4SV=1	tr|A0A553SKC1|A0A553SKC1_NIACIStageVsporulationproteinBOS=NialliacirculansOX=1397GN=spoVBPE=4SV=1	tr|A0A553SKC1|A0A553SKC1_NIACIStageVsporulationproteinBOS=NialliacirculansOX=1397GN=spoVBPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	458.788818359375	2	458.789318	915.564084	0.88951	0.0004081	-2.5684	-0.0011783	-1.6789	-0.00077024	458.78803113003795	151.48	0.73438	151.48	151.15	151.88	0					32	14	4	0	0	0	0.59983	1	17726	17726		31.955	6.5047	1	203530			19624	33599	16010	16033	21748	21748					0.10292412734122536
ILVVALSTT	9	Unmodified	_ILVVALSTT_					0	0	0		tr|A0A553SKC1|A0A553SKC1_NIACIStageVsporulationproteinBOS=NialliacirculansOX=1397GN=spoVBPE=4SV=1	tr|A0A553SKC1|A0A553SKC1_NIACIStageVsporulationproteinBOS=NialliacirculansOX=1397GN=spoVBPE=4SV=1	tr|A0A553SKC1|A0A553SKC1_NIACIStageVsporulationproteinBOS=NialliacirculansOX=1397GN=spoVBPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	458.7872314453125	2	458.789318	915.564084	-2.0925	-0.00096003	-0.91741	-0.0004209	-3.0099	-0.0013809	458.7887619770069	147.55	1.9467	147.32	146.82	148.77	-0.22697					104	38	4	0	0	0	0.69895	1	14963	14963		18.324	0	1	613710			19625	33599	16010	16033	21749	21749					0.10292412734122536
ILVVALSTT	9	Unmodified	_ILVVALSTT_					0	0	0		tr|A0A553SKC1|A0A553SKC1_NIACIStageVsporulationproteinBOS=NialliacirculansOX=1397GN=spoVBPE=4SV=1	tr|A0A553SKC1|A0A553SKC1_NIACIStageVsporulationproteinBOS=NialliacirculansOX=1397GN=spoVBPE=4SV=1	tr|A0A553SKC1|A0A553SKC1_NIACIStageVsporulationproteinBOS=NialliacirculansOX=1397GN=spoVBPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.7876892089844	2	458.789318	915.564084	-2.1404	-0.00098197	-0.94151	-0.00043196	-3.0819	-0.0014139	458.78877967166295	148.29	2.0994	146.85	146.22	148.32	-1.435					112	42	4	0	0	0	0.65476	2	14680	14643;14680		25.45	7.1258	1	1351300			19626	33599	16010	16033	21750;21751	21751					0.10292412734122536
ILVVEVKDP	9	Unmodified	_ILVVEVKDP_					0	0	0		ENSG00000169271|ENST00000302005|HSPB3	ENSG00000169271|ENST00000302005|HSPB3	ENSG00000169271|ENST00000302005|HSPB3	MULTI-MSMS	OvCa99_classI_Rep5	1	506.30950927734375	2	506.307875	1010.6012	1.7199	0.00087079	0.45196	0.00022883	2.1718	0.0010996	506.3080446562138	138.12	1.1926	138.12	137.54	138.74	0					41	25	2	0	0	0	0.27001	1	16140	16140		66.429	9.7082	1	244380			19627	6996	16011	16034	21752	21752					0.09632084279905939
ILVVFCPCS	9	Unmodified	_ILVVFCPCS_					0	0	0		tr|A0A7D6VV07|A0A7D6VV07_9CLOTCd(2+)-exportingATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03530PE=3SV=1	tr|A0A7D6VV07|A0A7D6VV07_9CLOTCd(2+)-exportingATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03530PE=3SV=1	tr|A0A7D6VV07|A0A7D6VV07_9CLOTCd(2+)-exportingATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03530PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.75225830078125	2	490.750824	979.487096	3.668	0.0018001	-0.30511	-0.00014973	3.3629	0.0016504	490.75037923157487	133.69	1.2288	132.16	131.8	133.03	-1.5257					59	24	4	0	0	0	0.50066	1	12903	12903		42.474	0	1	111650			19628	35207	16012	16035	21753	21753					-0.003468450782065702
ILVVFCPCS	9	Unmodified	_ILVVFCPCS_					0	0	0		tr|A0A7D6VV07|A0A7D6VV07_9CLOTCd(2+)-exportingATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03530PE=3SV=1	tr|A0A7D6VV07|A0A7D6VV07_9CLOTCd(2+)-exportingATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03530PE=3SV=1	tr|A0A7D6VV07|A0A7D6VV07_9CLOTCd(2+)-exportingATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03530PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	490.750824	979.487096	0.91189	0.00044751	2.6216	0.0012865	3.5335	0.0017341	490.75188537944496	132.61	0.98663	132.39	132.03	133.02	-0.22697	0.13306	0.00038926	NaN	42.474	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73916			19629	35207	16012	16035							-0.003468450782065702
ILVVFCPCS	9	Unmodified	_ILVVFCPCS_					0	0	0		tr|A0A7D6VV07|A0A7D6VV07_9CLOTCd(2+)-exportingATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03530PE=3SV=1	tr|A0A7D6VV07|A0A7D6VV07_9CLOTCd(2+)-exportingATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03530PE=3SV=1	tr|A0A7D6VV07|A0A7D6VV07_9CLOTCd(2+)-exportingATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03530PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	490.750824	979.487096	-0.67996	-0.00033369	4.0933	0.0020088	3.4133	0.0016751	490.7526176953901	133.33	1.0298	132.21	131.88	132.91	-1.1249	-0.043942	0.0018337	NaN	42.474	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55760			19630	35207	16012	16035							-0.003468450782065702
ILVYMMIE	8	Unmodified	_ILVYMMIE_					0	0	0			REV__ENST00000602150.2_2_19:35530007-35530163:+|nuORF	REV__ENST00000602150.2_2_19:35530007-35530163:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.82275390625	2	506.266307	1010.51806	0.29847	0.00015111	-0.95401	-0.00048299	-0.65554	-0.00033188	506.2655606881353	67.421	4.9373	63.931	62.805	67.742	-3.4902					167	100	3	0	0	0	0.028476	1	5338	5338		28.254	0	1	339050	+		19631	17753	16013	16036	21754	21754					0.013223082360468652
ILWEKTDD	8	Unmodified	_ILWEKTDD_					0	0	0			REV__ENSG00000179041|ENST00000320270|RRS1	REV__ENSG00000179041|ENST00000320270|RRS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.28729248046875	2	510.25584	1018.49713	0.19464	9.9317E-05	-4.0467	-0.0020649	-3.8521	-0.0019656	510.253743555238	52.691	1.0492	52.691	52.038	53.087	0					40	23	3	0	0	0	0.028476	1	4099	4099		25.45	1.2474	1	1135700	+		19632	22094	16014	16037	21755	21755					-0.011382425476313074
ILWETVPSM	9	Unmodified	_ILWETVPSM_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	OvCa99_classI_Rep5	1	538.2792358398438	2	538.27826	1074.54197	1.253	0.00067449	0.87	0.0004683	2.1231	0.0011428	538.2785957689952	138.72	2.9291	138.72	138.31	141.23	0					173	60	5	0	0	0	0.01029	2	16197	16173;16197		167.82	82.909	1	6897100			19633	1532	16015	16038	21756;21757	21757					0.00767864994077172
ILWETVPSM	9	Unmodified	_ILWETVPSM_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	538.27826	1074.54197	-1.6524	-0.00088944	4.6697	0.0025136	3.0173	0.0016241	538.2805782394422	139.15	0.34378	138.92	138.62	138.96	-0.22697	0.20931	0.0030944	NaN	167.82	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14021			19634	1532	16015	16038							0.00767864994077172
ILWETVPSM	9	Unmodified	_ILWETVPSM_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MATCH	OvCa9_classI_Rep3	3		2	538.27826	1074.54197	-0.89257	-0.00048045	3.3437	0.0017998	2.4511	0.0013194	538.2798161725669	139.7	0.54208	138.64	138.47	139.01	-1.0595	-0.0673	0.0016669	NaN	167.82	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14137			19635	1532	16015	16038							0.00767864994077172
ILWETVPSM	9	Unmodified	_ILWETVPSM_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	538.27826	1074.54197	0.27937	0.00015038	1.2328	0.00066361	1.5122	0.00081399	538.278628578858	140.06	0.39528	138.56	138.41	138.81	-1.4952	-0.14774	-0.00060556	NaN	167.82	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20017			19636	1532	16015	16038							0.00767864994077172
ILWKIISC	8	Unmodified	_ILWKIISC_					0	0	0			REV__ENST00000374612.5_1_1:23667485-23670726:-|nuORF	REV__ENST00000374612.5_1_1:23667485-23670726:-|nuORF	MSMS	OvCa9_classI_Rep2	2	488.2889709472656	2	488.288431	974.562309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	154.5	1	154.27	153.77	154.77	-0.22696								0	0	0	0.30129	1	15732	15732		20.482	5.8177	1		+		19637	25064	16016	16039	21758	21758					0.07401080444526542
ILWKTVLD	8	Unmodified	_ILWKTVLD_					0	0	0		ENST00000274498.8_1_5:142603375-142603492:+|nuORF	ENST00000274498.8_1_5:142603375-142603492:+|nuORF	ENST00000274498.8_1_5:142603375-142603492:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.32452392578125	2	494.29731	986.580068	0.3088	0.00015264	-0.60228	-0.0002977	-0.29348	-0.00014506	494.297089422748	115.89	1.6976	114.5	113.47	115.16	-1.3944					67	33	3	0	0	0	0.028476	1	10845	10845		37.159	2.9866	1	110560			19638	10019	16017	16040	21759	21759					0.08624118971033568
ILWLTCIV	8	Unmodified	_ILWLTCIV_					0	0	0			REV__ENSG00000173612|ENST00000310357|GPRC6A	REV__ENSG00000173612|ENST00000310357|GPRC6A	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.7823791503906	2	480.782982	959.55141	-1.2168	-0.000585	-0.34775	-0.00016719	-1.5645	-0.00075219	480.7827433979708	48.737	2.1296	45.629	45.296	47.426	-3.1077					105	40	4	0	0	0	0.72134	1	2713	2713		39.021	0.21535	1	2698300	+		19639	21790	16018	16041	21760	21760					0.07001678070241724
ILWRASEVL	9	Unmodified	_ILWRASEVL_					0	0	0			REV__nc|ENSG00000184999|Q63ZE4-2|SLC22A10	REV__nc|ENSG00000184999|Q63ZE4-2|SLC22A10	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.3217163085938	2	543.818941	1085.62333	1.9872	0.0010807	2.685	0.0014601	4.6722	0.0025408	543.8202255164118	95.502	0.50494	95.502	95.033	95.538	0					18	11	3	0	0	0	0.027462	1	10409	10409		31.955	0	1	7194800	+		19640	22467	16019	16042	21761	21761					0.08394308748324875
ILWSHLEL	8	Unmodified	_ILWSHLEL_					0	0	0		ENSG00000154727|ENST00000400075|GABPA;ENST00000419271.1_1_7:63353684-63354623:+|nuORF	ENSG00000154727|ENST00000400075|GABPA	ENSG00000154727|ENST00000400075|GABPA	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.273681640625	2	505.78711	1009.55967	2.3563	0.0011918	-3.4962	-0.0017683	-1.1399	-0.00057653	505.78546629234694	115.6	0.83625	115.6	115.39	116.23	0					30	17	3	0	0	0	0.028476	1	13234	13234		46.766	34.56	1	87417			19641	5749	16020	16043	21762	21762					0.055269483112283524
ILWSMERSLQ	10	Unmodified	_ILWSMERSLQ_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-MSMS	OvCa9_classI_Rep3	3	631.831298828125	2	631.831723	1261.64889	-0.38857	-0.00024551	-2.5029	-0.0015814	-2.8915	-0.0018269	631.8300640239108	96.734	2.0306	94.905	94.42	96.451	-1.8286					120	39	5	0	0	0	0.48198	1	6360	6360		56.721	1.9987	1	1113600			19642	9229	16021	16044	21763	21763					0.02853415208437582
ILWSMERSLQ	10	Unmodified	_ILWSMERSLQ_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-MSMS	OvCa9_classI_Rep4_	4	631.8309326171875	2	631.831723	1261.64889	1.1076	0.00069985	-3.9819	-0.0025159	-2.8742	-0.001816	631.8291515503455	97.264	1.9616	94.885	94.418	96.38	-2.3786					111	38	4	0	0	0	0.55359	1	8634	8634		47.657	2.6351	1	1062800			19643	9229	16021	16044	21764	21764					0.02853415208437582
ILWTTIAPR	9	Unmodified	_ILWTTIAPR_					0	0	0		tr|A0A7D6ZZ39|A0A7D6ZZ39_9CLOTCobalaminbiosynthesisproteinCobDOS=ClostridiumintestinaleOX=36845GN=cobDPE=3SV=1	tr|A0A7D6ZZ39|A0A7D6ZZ39_9CLOTCobalaminbiosynthesisproteinCobDOS=ClostridiumintestinaleOX=36845GN=cobDPE=3SV=1	tr|A0A7D6ZZ39|A0A7D6ZZ39_9CLOTCobalaminbiosynthesisproteinCobDOS=ClostridiumintestinaleOX=36845GN=cobDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	535.8211669921875	2	535.821484	1069.62842	-1.4267	-0.00076446	-2.7772	-0.0014881	-4.2038	-0.0022525	535.8198506740164	57.839	1.5468	55.047	54.477	56.024	-2.792					83	30	3	0	0	0	0.38529	1	4145	4145		53.351	3.9099	1	571980			19644	35943	16022	16045	21765	21765					0.09638612610933706
ILYDYPVTES	10	Unmodified	_ILYDYPVTES_					0	0	0			REV__tr|A0A553SSY0|A0A553SSY0_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_03825PE=3SV=1	REV__tr|A0A553SSY0|A0A553SSY0_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_03825PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	600.2965087890625	2	600.295162	1198.57577	1.2776	0.00076696	-0.1646	-9.8809E-05	1.113	0.00066815	600.2952473367644	116.37	1.3343	115.33	114.85	116.18	-1.0414					62	26	3	0	0	0	0.67931	1	8702	8702		32.812	2.4947	1	125570	+		19645	30892	16023	16046	21766	21766					-0.01557435033191723
ILYETVLTI	9	Unmodified	_ILYETVLTI_					0	0	0		ENST00000565642.5_1_16:71777395-71799448:-|nuORF;AP1G1|p.N739Kfs*28|1|0.05|ENSG00000166747|chr16:71738993-71738994|-/C|frameshift_variant;ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1;ENST00000565009.5_1_16:71790048-71805048:-|nuORF	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	532.8175659179688	2	532.815533	1063.61651	1.3107	0.00069836	1.1099	0.00059139	2.4206	0.0012897	532.8158519193153	146.44	1.1298	146.44	146.18	147.31	0					31	18	3	0	0	0	0.21395	1	17144	17144		73.975	18.471	1	171270			19646	98	16024	16047	21767	21767					0.08724951077078913
ILYEVKLRA	9	Unmodified	_ILYEVKLRA_					0	0	0			REV__tr|A0A553SPV8|A0A553SPV8_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_08590PE=4SV=1	REV__tr|A0A553SPV8|A0A553SPV8_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_08590PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.3159790039062	2	552.842416	1103.67028	0.67447	0.00037288	1.6921	0.00093547	2.3666	0.0013084	552.8433845326473	114.19	0.32023	114.19	114.01	114.33	0					9	6	2	0	0	0	0.027462	1	13017	13017		40.573	7.7602	1	121140	+		19647	30577	16025	16048	21768	21768					0.12259168299465273
ILYFCPMSSV	10	Unmodified	_ILYFCPMSSV_					0	0	0			REV__EPS15L1-SLC15A5|1|fusion	REV__EPS15L1-SLC15A5|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	580.2816772460938	2	580.279946	1158.54534	0.33058	0.00019183	2.0871	0.0012111	2.4177	0.0014029	580.2809906430982	140.42	1.816	140.42	140.12	141.93	0					87	36	4	0	0	0	0.45225	1	16414	16414		60.972	15.02	1	955900	+		19648	28113	16026	16049	21769	21769					-0.02759208223596943
ILYGIYLII	9	Unmodified	_ILYGIYLII_					0	0	0		tr|A0A7D6VTC2|A0A7D6VTC2_9CLOTTrkHfamilypotassiumuptakeproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16710PE=3SV=1	tr|A0A7D6VTC2|A0A7D6VTC2_9CLOTTrkHfamilypotassiumuptakeproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16710PE=3SV=1	tr|A0A7D6VTC2|A0A7D6VTC2_9CLOTTrkHfamilypotassiumuptakeproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16710PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.3765869140625	2	540.838811	1079.66307	-2.6677	-0.0014428	-2.869	-0.0015517	-5.5367	-0.0029945	540.8370996799849	103.97	0.63495	103.97	103.73	104.36	0					21	10	3	0	0	0	0.027462	1	11665	11665		21.702	0	1	318160			19649	35104	16027	16050	21770	21770					0.1264243569903556
ILYGKIIHL	9	Unmodified	_ILYGKIIHL_					0	0	0		ENSG00000168802|ENST00000448552|CHTF8	ENSG00000168802|ENST00000448552|CHTF8	ENSG00000168802|ENST00000448552|CHTF8	MULTI-MSMS	OvCa99_classI_Rep5	1	535.34423828125	2	535.342052	1068.66955	2.1131	0.0011313	0.31508	0.00016868	2.4282	0.0012999	535.3421493958617	95.347	1.7629	95.347	95.075	96.838	0					89	41	4	0	0	0	0.071436	2	10396	10396;10426		106.42	18.661	1	8381400			19650	6943	16028	16051	21771;21772	21771					0.13796373650416172
ILYGKIIHL	9	Unmodified	_ILYGKIIHL_					0	0	0		ENSG00000168802|ENST00000448552|CHTF8	ENSG00000168802|ENST00000448552|CHTF8	ENSG00000168802|ENST00000448552|CHTF8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.7904052734375	2	535.342052	1068.66955	-1.5862	-0.00084918	1.2343	0.00066076	-0.35196	-0.00018842	535.342595266601	99.437	1.6957	97.111	96.743	98.439	-2.3253					69	32	4	0	0	0	0.027462	1	8878	8878		50.025	11.218	1	148510			19651	6943	16028	16051	21773	21773					0.13796373650416172
ILYGKIIHL	9	Unmodified	_ILYGKIIHL_					0	0	0		ENSG00000168802|ENST00000448552|CHTF8	ENSG00000168802|ENST00000448552|CHTF8	ENSG00000168802|ENST00000448552|CHTF8	MULTI-MATCH	OvCa9_classI_Rep2	2		2	535.342052	1068.66955	-0.87023	-0.00046587	-4.7082	-0.0025205	-5.5784	-0.0029864	535.3399874227417	96.025	0.59727	94.997	94.615	95.212	-1.0281	-0.17471	-0.004891	NaN	106.42	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13875			19652	6943	16028	16051							0.13796373650416172
ILYGSPFL	8	Unmodified	_ILYGSPFL_					0	0	0			REV__ENSG00000129173|ENST00000250024|E2F8	REV__ENSG00000129173|ENST00000250024|E2F8	MULTI-MSMS	OvCa99_classI_Rep5	1	455.2590026855469	2	455.257654	908.500755	1.0964	0.00049914	0.94041	0.00042813	2.0368	0.00092727	455.2578979854514	124.22	0.73278	124.22	123.97	124.7	0					32	15	3	0	0	0	0.52992	1	14331	14331		74.517	5.4236	1	404910	+		19653	18888	16029	16052	21774	21774					0.04284472016900054
ILYHIALLV	9	Unmodified	_ILYHIALLV_					0	0	0			REV__ENST00000464088.5_1_1:117078607-117078679:-|nuORF	REV__ENST00000464088.5_1_1:117078607-117078679:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.8316650390625	2	527.836603	1053.65865	0.042541	2.2455E-05	-3.6499	-0.0019265	-3.6073	-0.0019041	527.8342379328817	81.627	1.3442	79.978	79.564	80.908	-1.6485					42	25	2	0	0	0	0.027462	1	7039	7039		14.664	0	1	109170	+		19654	26140	16030	16053	21775	21775					0.13396971276119984
ILYIHKHI	8	Unmodified	_ILYIHKHI_					0	0	0		ENST00000604908.1_1_6:46626610-46636458:+|nuORF	ENST00000604908.1_1_6:46626610-46636458:+|nuORF	ENST00000604908.1_1_6:46626610-46636458:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	518.8177490234375	2	518.818744	1035.62294	-0.23698	-0.00012295	-4.2447	-0.0022022	-4.4817	-0.0023252	518.8164288794276	57.475	0.42333	57.475	57.309	57.732	0					22	9	3	0	0	0	0.72134	1	4832	4832		39.021	1.8624	1	1198700			19655	14266	16031	16054	21776	21776					0.10654933819137113
ILYILTLNV	9	Unmodified	_ILYILTLNV_					0	0	0		tr|A0A7D6ZH22|A0A7D6ZH22_9CLOTVanZfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01150PE=4SV=1	tr|A0A7D6ZH22|A0A7D6ZH22_9CLOTVanZfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01150PE=4SV=1	tr|A0A7D6ZH22|A0A7D6ZH22_9CLOTVanZfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01150PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.3345336914062	2	531.333893	1060.65323	-3.0047	-0.0015965	2.7658	0.0014696	-0.23886	-0.00012692	531.3351707471279	125.72	1.3339	124.31	123.83	125.17	-1.4143					59	26	3	0	0	0	0.50149	1	11967	11967		42.396	1.618	1	31969			19656	35561	16032	16055	21777	21777					0.12533247693659177
ILYILTLNV	9	Unmodified	_ILYILTLNV_					0	0	0		tr|A0A7D6ZH22|A0A7D6ZH22_9CLOTVanZfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01150PE=4SV=1	tr|A0A7D6ZH22|A0A7D6ZH22_9CLOTVanZfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01150PE=4SV=1	tr|A0A7D6ZH22|A0A7D6ZH22_9CLOTVanZfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01150PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	531.333893	1060.65323	-0.48783	-0.0002592	0.069454	3.6903E-05	-0.41838	-0.0002223	531.3338550394833	124.35	1.6788	124.12	123.78	125.46	-0.23193	-0.097277	-0.0016681	NaN	42.396	51	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38292			19657	35561	16032	16055							0.12533247693659177
ILYLLMGN	8	Unmodified	_ILYLLMGN_					0	0	0			REV__ENSG00000279012|ENST00000624187|OR51B2	REV__ENSG00000279012|ENST00000624187|OR51B2	MULTI-SECPEP	OvCa9_classI_Rep3	3	469.294677734375	2	468.764789	935.515025	0.57803	0.00027096	-0.031581	-1.4804E-05	0.54645	0.00025616	468.7646261235075	104.22	0.57268	102.79	102.55	103.12	-1.4347					17	10	2	0	0	0	0.028476	1	7226	7226		28.254	0	1	22716	+		19658	23650	16033	16056	21778	21778					0.0446880117353885
ILYLSLFSF	9	Unmodified	_ILYLSLFSF_					0	0	0			REV__tr|A0A7D7A2A2|A0A7D7A2A2_9CLOTM28familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19065PE=4SV=1	REV__tr|A0A7D7A2A2|A0A7D7A2A2_9CLOTM28familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19065PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.7879638671875	2	551.812793	1101.61103	0.60098	0.00033163	-1.8711	-0.0010325	-1.2702	-0.00070089	551.8137884294825	37.864	0.24958	34.971	34.841	35.09	-2.8925					6	4	2	0	0	0	0.027462	1	1413	1413		25.45	0	1	8386.4	+		19659	32530	16034	16057	21779	21779					0.06429272285276966
ILYRININ	8	Unmodified	_ILYRININ_					0	0	0			REV__tr|A0A7D6ZRL2|A0A7D6ZRL2_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04115PE=3SV=1	REV__tr|A0A7D6ZRL2|A0A7D6ZRL2_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04115PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8040466308594	2	509.805834	1017.59712	-0.41042	-0.00020923	-3.6368	-0.0018541	-4.0473	-0.0020633	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.74971	1	13594	13594		26.796	2.5934	1	150140	+		19660	32161	16035	16058	21780	21780					0.08902039576832976
ILYRKLSI	8	Unmodified	_ILYRKLSI_					0	0	0		ENST00000426431.2_1_12:53808377-53808536:+|nuORF	ENST00000426431.2_1_12:53808377-53808536:+|nuORF	ENST00000426431.2_1_12:53808377-53808536:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	503.325439453125	2	503.326402	1004.63825	0.14036	7.0648E-05	-0.73987	-0.0003724	-0.59951	-0.00030175	503.32594865659956	112.82	1.9244	112.7	112.28	114.2	-0.12174					111	38	5	0	0	0	0.65062	1	10726	10726		53.351	7.3995	1	946430			19661	11736	16036	16059	21781	21781					0.13611800616320124
ILYRLKDIERL	11	Unmodified	_ILYRLKDIERL_					0	0	0			REV__tr|A0A553ST76|A0A553ST76_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04415PE=4SV=1	REV__tr|A0A553ST76|A0A553ST76_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04415PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	477.9602355957031	3	477.960921	1430.86093	-5.0293	-0.0024038	1.2478	0.00059639	-3.7816	-0.0018074	477.96128633611335	158.76	1.3288	158.54	157.62	158.95	-0.22696					57	34	3	0	0	0	0.72568	1	16073	16073		6.6596	0	1	44261	+		19662	30926	16037	16060	21782	21782					0.16273829890883462
ILYTSSKNQ	9	Unmodified	_ILYTSSKNQ_					0	0	0		tr|A0A7D7AAP3|A0A7D7AAP3_9CLOTLysRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12290PE=3SV=1	tr|A0A7D7AAP3|A0A7D7AAP3_9CLOTLysRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12290PE=3SV=1	tr|A0A7D7AAP3|A0A7D7AAP3_9CLOTLysRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12290PE=3SV=1	MSMS	OvCa99_classI_Rep5	1	527.2875366210938	2	527.282389	1052.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	160.32	1	160.32	159.82	160.82	0								0	0	0	0.17936	1	18796	18796		35.618	2.1027	1				19663	36206	16038	16061	21783	21783					0.026051352350577872
ILYVGLGIFL	10	Unmodified	_ILYVGLGIFL_					0	0	0			REV__tr|A0A553SMN5|A0A553SMN5_NIACIDUF475domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22865PE=3SV=1	REV__tr|A0A553SMN5|A0A553SMN5_NIACIDUF475domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22865PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.3421630859375	2	554.344261	1106.67397	-1.227	-0.0006802	0.90791	0.0005033	-0.31912	-0.0001769	554.3446336865961	126.95	1.6713	125.52	125.19	126.87	-1.4357					85	32	5	0	0	0	0.49566	1	12115	12115		54.765	5.3231	1	250630	+		19664	30353	16039	16062	21784	21784					0.12489838073315696
ILYVGLGIFL	10	Unmodified	_ILYVGLGIFL_					0	0	0			REV__tr|A0A553SMN5|A0A553SMN5_NIACIDUF475domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22865PE=3SV=1	REV__tr|A0A553SMN5|A0A553SMN5_NIACIDUF475domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22865PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	554.344261	1106.67397	1.2837	0.0007116	-1.4699	-0.00081485	-0.18626	-0.00010325	554.3432679629344	125.54	1.4815	125.31	125.01	126.49	-0.2359	-0.15949	-0.00098908	NaN	54.765	78	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196990	+		19665	30353	16039	16062							0.12489838073315696
ILYVGLGIFL	10	Unmodified	_ILYVGLGIFL_					0	0	0			REV__tr|A0A553SMN5|A0A553SMN5_NIACIDUF475domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22865PE=3SV=1	REV__tr|A0A553SMN5|A0A553SMN5_NIACIDUF475domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22865PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	554.344261	1106.67397	0.82494	0.0004573	-0.95319	-0.0005284	-0.12826	-7.1098E-05	554.3435662214672	126.64	1.4113	125.57	125.28	126.69	-1.0715	0.10808	-0.00041617	NaN	54.765	70	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216940	+		19666	30353	16039	16062							0.12489838073315696
ILYYPLFL	8	Unmodified	_ILYYPLFL_					0	0	0		tr|A0A553SKU8|A0A553SKU8_NIACITypeIIsecretionsystemFfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_19320PE=3SV=1	tr|A0A553SKU8|A0A553SKU8_NIACITypeIIsecretionsystemFfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_19320PE=3SV=1	tr|A0A553SKU8|A0A553SKU8_NIACITypeIIsecretionsystemFfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_19320PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.768798828125	2	521.304604	1040.59466	-0.0444	-2.3146E-05	3.1394	0.0016366	3.095	0.0016134	521.3060085714962	74.142	0.42162	74.142	73.983	74.405	0					16	10	2	0	0	0	0.028476	1	7325	7325		43.626	10.133	1	1240600			19667	33655	16040	16063	21785	21785					0.075981911191775
IMAEPARPD	9	Unmodified	_IMAEPARPD_					0	0	0		ENST00000418437.1_1_13:21834372-21835116:+|nuORF	ENST00000418437.1_1_13:21834372-21835116:+|nuORF	ENST00000418437.1_1_13:21834372-21835116:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.786376953125	2	500.250034	998.485516	-0.82901	-0.00041471	2.6472	0.0013243	1.8182	0.00090955	500.25113530071246	53.4	0.34908	53.4	53.214	53.564	0					16	7	3	0	0	0	0.027462	1	4259	4259		25.574	9.9322	1	301780			19668	11641	16041	16064	21786	21786					-0.013787628426030096
IMAGEKSVKL	10	Unmodified	_IMAGEKSVKL_					0	0	0		tr|A0A7D6VZZ5|A0A7D6VZZ5_9CLOTRibosomalRNAsmallsubunitmethyltransferaseAOS=ClostridiumintestinaleOX=36845GN=rsmAPE=3SV=1	tr|A0A7D6VZZ5|A0A7D6VZZ5_9CLOTRibosomalRNAsmallsubunitmethyltransferaseAOS=ClostridiumintestinaleOX=36845GN=rsmAPE=3SV=1	tr|A0A7D6VZZ5|A0A7D6VZZ5_9CLOTRibosomalRNAsmallsubunitmethyltransferaseAOS=ClostridiumintestinaleOX=36845GN=rsmAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.3119506835938	2	538.312635	1074.61072	0.37434	0.00020151	-4.354	-0.0023438	-3.9796	-0.0021423	538.31049958104	96.975	1.3571	94.549	94.22	95.577	-2.4256					72	26	5	0	0	0	0.083353	1	8567	8567		117.81	4.3995	1	637690			19669	35368	16042	16065	21787	21787					0.07639529293783198
IMAHDLVK	8	Oxidation (M)	_IM(Oxidation (M))AHDLVK_		IM(1)AHDLVK		IM(89)AHDLVK	0	0	1			REV__CTNNBL1|p.L354Q|1|0.21|ENSG00000132792|chr20:37802896-37802896|T/A|missense_variant	REV__CTNNBL1|p.L354Q|1|0.21|ENSG00000132792|chr20:37802896-37802896|T/A|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	471.7576599121094	2	471.757495	941.500437	2.1454	0.0010121	-3.8072	-0.0017961	-1.6618	-0.00078397	471.7556125413328	77.44	2.4336	77.44	76.961	79.394	0					117	58	5	0	0	0	0.39692	1	7876	7876		88.643	8.7036	1	33909000	+		19670	16253	16043	16066	21788	21788		389			0.027347290253942447
IMAIFRYVIL	10	Unmodified	_IMAIFRYVIL_					0	0	0		ENSG00000144136|ENST00000272542|SLC20A1	ENSG00000144136|ENST00000272542|SLC20A1	ENSG00000144136|ENST00000272542|SLC20A1	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8683471679688	2	619.87012	1237.72569	-3.8587	-0.0023919	2.7872	0.0017277	-1.0715	-0.00066418	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.76627	1	15453	15453		23.042	1.0826	1	492670			19671	5132	16044	16067	21789	21789					0.11633258495589871
IMAKKLVK	8	Unmodified	_IMAKKLVK_					0	0	0			REV__nc|ENSG00000108443|P23443-4|RPS6KB1;REV__RPS6KB1-VMP1|5|fusion	REV__RPS6KB1-VMP1|5|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.7816162109375	2	465.812073	929.609594	-0.61904	-0.00028836	4.0521	0.0018875	3.4331	0.0015992	465.81432109347287	44.48	0.22339	44.48	44.305	44.528	0					6	4	2	0	0	0	0.028476	1	3010	3010		12.959	0	1	47360	+		19672	17888;29341	16045	16068	21790	21790					0.1419735971553564
IMAKKNESL	9	Unmodified	_IMAKKNESL_					0	0	0			REV__tr|A0A553SNR0|A0A553SNR0_NIACIClassISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_25060PE=4SV=1	REV__tr|A0A553SNR0|A0A553SNR0_NIACIClassISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_25060PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.7623291015625	2	517.289159	1032.56377	1.9541	0.0010108	0.12203	6.3125E-05	2.0761	0.001074	517.2890054555223	101.11	0.54245	101.11	100.86	101.4	0					22	12	2	0	0	0	0.027462	1	11273	11273		21.96	3.6355	1	776660	+		19673	30441	16046	16069	21791	21791					0.04878669742629427
IMALPINAYI	10	Unmodified	_IMALPINAYI_					0	0	0		nc|ENSG00000006695|Q12887-2|COX10;ENSG00000006695|ENST00000261643|COX10	nc|ENSG00000006695|Q12887-2|COX10	nc|ENSG00000006695|Q12887-2|COX10	MULTI-MSMS	OvCa99_classI_Rep5	1	559.8184204101562	2	559.817553	1117.62055	2.0741	0.0011611	-3.468	-0.0019415	-1.3939	-0.00078031	559.8156915922438	133.1	8.2265	133.1	132.6	140.83	0					464	175	6	0	0	0	0.6104	1	16324	16324		40.778	1.7567	1	47573000			19674	886	16047	16070	21792	21792					0.06644717299150216
IMAMIILTI	9	Unmodified	_IMAMIILTI_					0	0	0		tr|A0A7D6VUQ6|A0A7D6VUQ6_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08010PE=4SV=1	tr|A0A7D6VUQ6|A0A7D6VUQ6_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08010PE=4SV=1	tr|A0A7D6VUQ6|A0A7D6VUQ6_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08010PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	509.8035583496094	2	509.805599	1017.59665	-1.3099	-0.00066782	-2.4611	-0.0012547	-3.771	-0.0019225	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.6926	1	11008	11008		20.482	1.1219	1	99460			19675	35197	16048	16071	21793	21793					0.08855160541145324
IMASRTIEN	9	Unmodified	_IMASRTIEN_					0	0	0		tr|A0A7D6VS84|A0A7D6VS84_9CLOTFerrousirontransportproteinBOS=ClostridiumintestinaleOX=36845GN=feoBPE=3SV=1	tr|A0A7D6VS84|A0A7D6VS84_9CLOTFerrousirontransportproteinBOS=ClostridiumintestinaleOX=36845GN=feoBPE=3SV=1	tr|A0A7D6VS84|A0A7D6VS84_9CLOTFerrousirontransportproteinBOS=ClostridiumintestinaleOX=36845GN=feoBPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	517.772705078125	2	517.768591	1033.52263	1.0845	0.00056152	3.8907	0.0020145	4.9752	0.002576	517.7705176855802	111.26	2.2615	111.26	110.85	113.11	0					129	49	4	0	0	0	0.13504	1	12739	12739		87.696	2.337	1	9632800			19676	34995	16049	16072	21794	21794					0.007209087031696981
IMCIKLALF	9	Unmodified	_IMCIKLALF_					0	0	0			REV__nc|ENSG00000204161|Q5T292|TMEM273	REV__nc|ENSG00000204161|Q5T292|TMEM273	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.2738037109375	2	526.305767	1050.59698	-0.57285	-0.00030149	-1.6279	-0.00085675	-2.2007	-0.0011582	526.3057374777239	94.379	1.078	93.279	92.382	93.46	-1.0995					39	20	4	0	0	0	0.027462	1	8385	8385		35.201	21.425	1	91409	+		19677	23130	16050	16073	21795	21795					0.0737058026095383
IMCMNKDLVI	10	Unmodified	_IMCMNKDLVI_					0	0	0			REV__CTNNA3|p.A705D|1|0.22|ENSG00000183230|chr10:66069353-66069353|G/T|missense_variant	REV__CTNNA3|p.A705D|1|0.22|ENSG00000183230|chr10:66069353-66069353|G/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	589.3509521484375	2	590.300355	1178.58616	0.69635	0.00041106	-3.4921	-0.0020614	-2.7957	-0.0016503	590.2969079376186	87.437	1.1986	86.006	85.281	86.48	-1.4311					56	23	4	0	0	0	0.02661	1	7651	7651		49.442	7.0454	1	81204	+		19678	16252	16051	16074	21796	21796					0.004008098243730274
IMDDKSLNI	9	Unmodified	_IMDDKSLNI_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	524.7727661132812	2	524.7708	1047.52705	1.6638	0.00087312	0.11925	6.2581E-05	1.7831	0.0009357	524.7706621411131	87.142	0.827	87.142	86.801	87.628	0					31	19	2	0	0	0	0.055627	1	9217	9217		115.49	7.4066	1	2079500			19679	4862	16052	16075	21797	21797					0.005183731260558488
IMDDKSLNI	9	Unmodified	_IMDDKSLNI_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	524.7708	1047.52705	0.20149	0.00010573	-7.013	-0.0036802	-6.8115	-0.0035745	524.7649235455674	89.671	0.29893	87.096	86.851	87.149	-2.575	-0.022712	-0.0060874	NaN	115.49	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5513.4			19680	4862	16052	16075							0.005183731260558488
IMDLAQRYH	9	Oxidation (M)	_IM(Oxidation (M))DLAQRYH_		IM(1)DLAQRYH		IM(53)DLAQRYH	0	0	1			REV__ENST00000468255.5_1_6:31633906-31636470:+|nuORF	REV__ENST00000468255.5_1_6:31633906-31636470:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	581.7870483398438	2	581.787315	1161.56008	1.4228	0.00082779	-2.2244	-0.0012941	-0.8016	-0.00046636	581.7857463533247	107.14	1.0948	107.14	106.93	108.03	0					51	25	3	0	0	0	0.38529	1	12103	12103		53.351	10.955	1	2316200	+		19681	16073	16053	16076	21798	21798		387			-0.014240000312156553
IMDVSKQLD	9	Unmodified	_IMDVSKQLD_					0	0	0			REV__ENSG00000128513|ENST00000357628|POT1	REV__ENSG00000128513|ENST00000357628|POT1	MULTI-MSMS	OvCa99_classI_Rep5	1	524.7728271484375	2	524.7708	1047.52705	1.6638	0.00087312	0.11925	6.2581E-05	1.7831	0.0009357	524.7706621411131	87.142	0.827	87.142	86.801	87.628	0					31	19	2	0	0	0	0.19758	1	9223	9223		76.774	7.9873	1	2079500	+		19682	18855	16054	16077	21799	21799					0.005183731260785862
IMEAFVRHH	9	Oxidation (M)	_IM(Oxidation (M))EAFVRHH_		IM(1)EAFVRHH		IM(63)EAFVRHH	0	0	1			REV__tr|A0A553SJW7|A0A553SJW7_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_17685PE=4SV=1	REV__tr|A0A553SJW7|A0A553SJW7_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_17685PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.2904663085938	2	578.290025	1154.5655	2.6604	0.0015385	-3.9024	-0.0022567	-1.2419	-0.00071819	578.2875433162809	133.74	3.4984	132.22	131.46	134.96	-1.5257					171	70	3	0	0	0	0.29717	1	12945	12945		63.306	6.5852	1	165290	+		19683	30050	16055	16078	21800	21800		658			-0.00560276448732111
IMEAMMQEL	9	Unmodified	_IMEAMMQEL_					0	0	0			REV__ENSG00000170638|ENST00000380909|TRABD	REV__ENSG00000170638|ENST00000380909|TRABD	MULTI-MSMS	OvCa99_classI_Rep5	1	548.2478637695312	2	548.247788	1094.48102	0.94876	0.00052015	-1.5082	-0.00082686	-0.55942	-0.0003067	548.2468492872774	142.92	0.68015	142.92	142.64	143.32	0					29	13	3	0	0	0	0.28934	1	16695	16695		64.207	9.4426	1	194430	+		19684	21555	16056	16079	21801	21801					-0.06243731372023831
IMEDVIKYF	9	Unmodified	_IMEDVIKYF_					0	0	0		tr|A0A553STC4|A0A553STC4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04740PE=4SV=1	tr|A0A553STC4|A0A553STC4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04740PE=4SV=1	tr|A0A553STC4|A0A553STC4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04740PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.2945556640625	2	579.299193	1156.58383	1.6083	0.00093169	-4.0962	-0.0023729	-2.4879	-0.0014413	579.7982868611101	110.35	0.22311	110.35	110.22	110.45	0					5	4	2	0	0	0	0.027462	1	12511	12511		32.812	11.865	1	29785			19685	34474	16057	16080	21802	21802					0.01180420682590011
IMEFTTTLLN	10	Unmodified	_IMEFTTTLLN_					0	0	0		PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant;PRKDC|p.P3973Afs*40|1|0.09|ENSG00000253729|chr8:47777811-47777812|-/C|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC;PRKDC|p.K2221Nfs*18|1|0.7|ENSG00000253729|chr8:47855320-47855320|T/-|frameshift_variant	PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant	PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	591.806396484375	2	591.807382	1181.60021	0.98535	0.00058314	-3.5068	-0.0020754	-2.5215	-0.0014922	591.8051069859579	132.42	0.80553	132.42	132.04	132.84	0					38	16	3	0	0	0	0.50999	1	15384	15384		52.937	3.4952	1	442740			19686	9437	16058	16081	21803	21803					0.016675018486921545
IMEKMPLQK	9	Unmodified	_IMEKMPLQK_					0	0	0		SACS|p.V3288Tfs*46|1|0.07|ENSG00000151835|chr13:23334014-23334015|-/TGAAGGGATACTTTTTGTAAGTACGT|frameshift_variant;ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.L2402Tfs*7|1|0.04|ENSG00000151835|chr13:23336672-23336673|-/T|frameshift_variant	SACS|p.V3288Tfs*46|1|0.07|ENSG00000151835|chr13:23334014-23334015|-/TGAAGGGATACTTTTTGTAAGTACGT|frameshift_variant	SACS|p.V3288Tfs*46|1|0.07|ENSG00000151835|chr13:23334014-23334015|-/TGAAGGGATACTTTTTGTAAGTACGT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.3582153320312	2	559.309038	1116.60352	0.4998	0.00027954	-1.71	-0.00095639	-1.2102	-0.00067685	559.3079565054945	99.067	0.88198	96.741	96.433	97.315	-2.3253					29	16	2	0	0	0	0.027433	1	8848	8848		54.776	0	1	66976			19687	5587	16059	16082	21804	21804					0.04988473421690287
IMEKRKMSR	9	2 Oxidation (M)	_IM(Oxidation (M))EKRKM(Oxidation (M))SR_		IM(1)EKRKM(1)SR		IM(48)EKRKM(48)SR	0	0	2			REV__nc|ENSG00000143469|Q8NB59-3|SYT14	REV__nc|ENSG00000143469|Q8NB59-3|SYT14	MULTI-MSMS	OvCa99_classI_Rep5	1	404.2195739746094	3	404.218009	1209.6322	3.2514	0.0013143	-0.66404	-0.00026842	2.5874	0.0010459	404.2178648039015	90.477	4.4615	90.477	90.186	94.648	0					287	107	5	0	0	0	0.44248	1	9835	9835		47.96	14.038	1	88373000	+		19688	19842	16060	16083	21805	21805		455;456			0.03576591050841671
IMEKYQEVE	9	Unmodified	_IMEKYQEVE_					0	0	0			REV__tr|A0A7D6ZSH7|A0A7D6ZSH7_9CLOTAntitoxinYezGfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07835PE=4SV=1	REV__tr|A0A7D6ZSH7|A0A7D6ZSH7_9CLOTAntitoxinYezGfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07835PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.8016967773438	2	584.781364	1167.54818	-1.0657	-0.00062323	-1.9606	-0.0011465	-3.0263	-0.0017697	584.7798532041076	50.063	0.34468	50.063	49.856	50.201	0					11	7	2	0	0	0	0.027462	1	3782	3782		39.253	7.723	1	135650	+		19689	32188	16061	16084	21806	21806					-0.028896615650637614
IMEPAARGMM	10	Oxidation (M)	_IM(Oxidation (M))EPAARGMM_		IM(1)EPAARGMM		IM(37)EPAARGM(-37)M(-44)	0	0	1			REV__ENST00000416702.1_1_10:21318681-21319128:+|nuORF	REV__ENST00000416702.1_1_10:21318681-21319128:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	561.758544921875	2	561.758855	1121.50316	1.0872	0.00061075	-1.779	-0.00099939	-0.69184	-0.00038865	561.757717613742	63.682	3.3714	60.689	60	63.371	-2.9933					120	66	3	0	0	0	0.55359	1	2375	2375		47.657	6.8792	3	89773	+		19690	25552	16062	16085	21807	21807		573			-0.052735069036089044
IMETATQREGN	11	Unmodified	_IMETATQREGN_					0	0	0		ENSG00000186026|ENST00000421176|ZNF284	ENSG00000186026|ENST00000421176|ZNF284	ENSG00000186026|ENST00000421176|ZNF284	MULTI-MSMS	OvCa9_classI_Rep3	3	625.29443359375	2	625.295701	1248.57685	-4.4959	-0.0028113	1.5373	0.00096127	-2.9586	-0.00185	625.2965199042848	153.36	0.97864	152.39	152.03	153.01	-0.97301					42	20	3	0	0	0	0.54737	1	13107	13107		56.434	22.261	1	67090			19691	8310	16063	16086	21808	21808					-0.037495439359418015
IMETGITLK	9	Unmodified	_IMETGITLK_					0	0	0		tr|A0A7D6VXQ9|A0A7D6VXQ9_9CLOTATPphosphoribosyltransferaseOS=ClostridiumintestinaleOX=36845GN=hisGPE=3SV=1	tr|A0A7D6VXQ9|A0A7D6VXQ9_9CLOTATPphosphoribosyltransferaseOS=ClostridiumintestinaleOX=36845GN=hisGPE=3SV=1	tr|A0A7D6VXQ9|A0A7D6VXQ9_9CLOTATPphosphoribosyltransferaseOS=ClostridiumintestinaleOX=36845GN=hisGPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	503.2850036621094	2	503.286085	1004.55762	2.6448	0.0013311	-3.5073	-0.0017652	-0.86245	-0.00043406	503.28414634994164	115.76	0.88044	115.76	115.44	116.32	0					40	18	3	0	0	0	0.091859	1	13245	13245		99.375	1.9023	1	1456200			19692	35297	16064	16087	21809	21809					0.055521515111195185
IMETKRVEI	9	Unmodified	_IMETKRVEI_					0	0	0		ENST00000513585.5_1_5:112312534-112328375:+|nuORF;ENST00000504961.1_1_5:112312516-112319704:+|nuORF	ENST00000513585.5_1_5:112312534-112328375:+|nuORF	ENST00000513585.5_1_5:112312534-112328375:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.8154907226562	2	559.815541	1117.61653	3.9956	0.0022368	-3.6641	-0.0020512	0.3315	0.00018558	559.813249709843	134.7	2.6126	133.16	132.47	135.08	-1.5437					137	52	4	0	0	0	0.33652	1	13046	13046		58.782	2.0609	1	191680			19693	12883	16065	16088	21810	21810					0.06242627805431766
IMEWGGMPQ	9	Unmodified	_IMEWGGMPQ_					0	0	0			REV__ENST00000504788.5_1_5:126112928-126171953:+|nuORF	REV__ENST00000504788.5_1_5:126112928-126171953:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7581176757812	2	524.733163	1047.45177	-0.99961	-0.00052453	-2.7373	-0.0014364	-3.7369	-0.0019609	524.7314436714271	49.44	0.22049	49.44	49.33	49.55	0					6	4	2	0	0	0	0.027462	1	3706	3706		23.042	0	1	73442	+		19694	18148	16066	16089	21811	21811					-0.07005507606004358
IMFGKRRK	8	Unmodified	_IMFGKRRK_					0	0	0		nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1;ENST00000488719.1_1_22:30973035-30974997:-|nuORF	nc|ENSG00000100029|O00541-2|PES1	nc|ENSG00000100029|O00541-2|PES1	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.3170166015625	2	518.315846	1034.61714	2.0408	0.0010578	0.0064089	3.3219E-06	2.0473	0.0010611	518.3157944372941	136.58	3.063	135.03	133.61	136.67	-1.5437					148	63	3	0	0	0	0.73626	1	13404	13404		33.516	0	1	141910			19695	1996	16067	16090	21812	21812					0.10121512035811975
IMFSCNRSE	9	Carbamidomethyl (C)	_IMFSC(Carbamidomethyl (C))NRSE_	IMFSC(1)NRSE		IMFSC(62)NRSE		0	1	0			REV__nc|ENSG00000162374|P26378-3|ELAVL4	REV__nc|ENSG00000162374|P26378-3|ELAVL4	MULTI-MSMS	OvCa9_classI_Rep4_	4	572.250732421875	2	572.249708	1142.48486	-0.043011	-2.4613E-05	2.1413	0.0012254	2.0983	0.0012007	572.2508795688216	115.95	0.99143	114.58	114.2	115.19	-1.3645					35	19	3	0	0	0	0.3076	1	10812	10812		62.107	8.756	1	53199	+		19696	28962	16068	16091	21813	21813	355				-0.0806792555397351
IMFSCNRSE	9	Carbamidomethyl (C)	_IMFSC(Carbamidomethyl (C))NRSE_					0	1	0			REV__nc|ENSG00000162374|P26378-3|ELAVL4	REV__nc|ENSG00000162374|P26378-3|ELAVL4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	572.249708	1142.48486	-1.1723	-0.00067087	4.0958	0.0023438	2.9235	0.001673	572.2520089659346	115	0.83924	114.88	114.6	115.44	-0.11777	0.19831	0.0011738	NaN	62.107	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28817	+		19697	28962	16068	16091			355				-0.0806792555397351
IMFSCNRSE	9	Carbamidomethyl (C)	_IMFSC(Carbamidomethyl (C))NRSE_					0	1	0			REV__nc|ENSG00000162374|P26378-3|ELAVL4	REV__nc|ENSG00000162374|P26378-3|ELAVL4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	572.249708	1142.48486	-0.87525	-0.00050086	3.0938	0.0017704	2.2185	0.0012696	572.2512669369651	115.63	0.9866	114.59	114.26	115.24	-1.0414	-0.0951	2.7017E-05	NaN	62.107	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55569	+		19698	28962	16068	16091			355				-0.0806792555397351
IMGNCELK	8	Unmodified	_IMGNCELK_					0	0	0			REV__ENST00000475849.1_1_6:155632464-155635574:-|nuORF	REV__ENST00000475849.1_1_6:155632464-155635574:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	454.22283935546875	2	454.222431	906.430309	-0.24326	-0.00011049	0.83215	0.00037798	0.58889	0.00026749	454.22265967640186	24.561	0.55188	24.561	24.336	24.888	0					25	10	4	0	0	0	0.72896	1	456	456		37.159	1.5408	1	309210	+		19699	26360	16069	16092	21814	21814					-0.026648926347320412
IMGSCELLTV	10	Unmodified	_IMGSCELLTV_					0	0	0			REV__chr4:1098037-1099716|123|28.82|0.58|5.64|-|1|None,RNF212|1	REV__chr4:1098037-1099716|123|28.82|0.58|5.64|-|1|None,RNF212|1	MULTI-MSMS	OvCa99_classI_Rep5	1	533.27099609375	2	533.269578	1064.5246	2.2033	0.001175	-0.67261	-0.00035868	1.5307	0.00081627	533.2690630525617	137.23	0.62668	137.23	136.97	137.59	0					30	12	3	0	0	0	0.42962	1	16013	16013		64.207	0	1	276100	+		19700	16050	16070	16093	21815	21815					-0.0050779860325746995
IMGTVLLTGGL	11	Unmodified	_IMGTVLLTGGL_					0	0	0		ENSG00000119915|ENST00000370005|ELOVL3	ENSG00000119915|ENST00000370005|ELOVL3	ENSG00000119915|ENST00000370005|ELOVL3	MSMS	OvCa99_classI_Rep5	1	537.8137817382812	2	537.81501	1073.61547	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.737	1	81.737	81.237	82.237	0								0	0	0	0.063962	1	8436	8436		74.255	1.3758	1				19701	3402	16071	16094	21816	21816					0.08160413436553426
IMHLWPPIL	9	Unmodified	_IMHLWPPIL_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	560.8485107421875	2	560.322805	1118.63106	4.3018	0.0024104	-2.6025	-0.0014583	1.6993	0.00095214	560.3220952443386	134.19	0.14854	132.66	132.59	132.74	-1.5257					4	2	2	0	0	0	0.027462	1	12962	12962		21.702	8.7432	1	14836			19702	8768	16072	16095	21817	21817					0.07648744744233227
IMHYNVVE	8	Unmodified	_IMHYNVVE_					0	0	0			REV__ENST00000478065.5_1_1:1237366-1238730:-|nuORF	REV__ENST00000478065.5_1_1:1237366-1238730:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.2705383300781	2	502.747127	1003.4797	1.6438	0.00082641	-2.5244	-0.0012691	-0.8806	-0.00044272	502.7457960725268	91.302	0.61085	91.302	91.057	91.668	0					23	14	2	0	0	0	0.028476	1	9793	9793		30.504	0	1	530760	+		19703	19023	16073	16096	21818	21818					-0.021898613542589374
IMIANDLFGF	10	Unmodified	_IMIANDLFGF_					0	0	0			REV__ENSG00000164983|ENST00000297632|TMEM65	REV__ENSG00000164983|ENST00000297632|TMEM65	MULTI-MSMS	OvCa99_classI_Rep5	1	571.2941284179688	2	570.791535	1139.56852	0.83484	0.00047652	-2.8137	-0.0016061	-1.9789	-0.0011295	570.7894628952289	151.15	0.80769	151.15	150.84	151.65	0					41	15	4	0	0	0	0.52439	1	17681	17681		51.193	12.387	1	254530	+		19704	21046	16074	16097	21819	21819					0.004315538853916223
IMIICLGKY	9	Unmodified	_IMIICLGKY_					0	0	0			REV__ENST00000521381.5_1_5:67590478-67590998:+|nuORF	REV__ENST00000521381.5_1_5:67590478-67590998:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	527.27197265625	2	527.295399	1052.57624	-0.21823	-0.00011507	0.26375	0.00013907	0.045519	2.4002E-05	527.2954401028637	95.98	0.74681	94.952	94.714	95.461	-1.0281					20	14	2	0	0	0	0.027462	1	8665	8665		31.955	2.8053	1	25744	+		19705	27067	16075	16098	21820	21820					0.05205989881346795
IMIICLGKY	9	Unmodified	_IMIICLGKY_					0	0	0			REV__ENST00000521381.5_1_5:67590478-67590998:+|nuORF	REV__ENST00000521381.5_1_5:67590478-67590998:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	527.272705078125	2	527.295399	1052.57624	-1.3006	-0.00068581	1.1089	0.00058474	-0.19167	-0.00010107	527.2959470683326	96.839	0.56963	95.01	94.724	95.293	-1.8286					18	10	2	0	0	0	0.027462	1	6410	6410		33.516	13.519	1	37049	+		19706	27067	16075	16098	21821	21821					0.05205989881346795
IMIILLRNTF	10	Unmodified	_IMIILLRNTF_					0	0	0		tr|A0A7D6W3Y7|A0A7D6W3Y7_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11740PE=4SV=1	tr|A0A7D6W3Y7|A0A7D6W3Y7_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11740PE=4SV=1	tr|A0A7D6W3Y7|A0A7D6W3Y7_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11740PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	616.7900390625	2	617.373026	1232.7315	-0.28133	-0.00017368	2.8423	0.0017547	2.5609	0.001581	617.3746125397424	35.679	0.41776	35.679	35.475	35.892	0					16	8	3	0	0	0	0.026942	1	1817	1817		20.947	0	1	109920			19707	35464	16076	16099	21822	21822					0.1244435700723443
IMIILMEF	8	Unmodified	_IMIILMEF_					0	0	0			REV__tr|A0A553SIZ7|A0A553SIZ7_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15800PE=4SV=1	REV__tr|A0A553SIZ7|A0A553SIZ7_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15800PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	505.2783508300781	2	505.276675	1008.5388	2.235	0.0011293	-0.42367	-0.00021407	1.8113	0.00091523	505.27656906561225	86.868	3.3317	86.868	86.431	89.763	0					250	80	6	0	0	0	0.45832	1	9367	9367		81.716	0	1	155250000	+		19708	29949	16077	16100	21823	21823					0.03486898615710743
IMILTKVSN	9	Unmodified	_IMILTKVSN_					0	0	0		tr|A0A553SFG9|A0A553SFG9_NIACIABCtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08855PE=3SV=1	tr|A0A553SFG9|A0A553SFG9_NIACIABCtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08855PE=3SV=1	tr|A0A553SFG9|A0A553SFG9_NIACIABCtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08855PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	509.80322265625	2	509.801903	1017.58925	-0.41042	-0.00020923	4.0745	0.0020772	3.6641	0.001868	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.62352	1	13440	13440		29.15	2.4566	1	150140			19709	33038	16078	16101	21824	21824					0.08116144265068215
IMIVKILGSV	10	Unmodified	_IMIVKILGSV_					0	0	0		nc|ENSG00000157765|O95436-2|SLC34A2;SLC34A2|p.A412Lfs*4|1|0.07|ENSG00000157765|chr4:25674309-25674310|-/TT|frameshift_variant;ENSG00000157765|ENST00000382051|SLC34A2	nc|ENSG00000157765|O95436-2|SLC34A2	nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-MSMS	OvCa99_classI_Rep5	1	536.8463745117188	2	536.843571	1071.67259	1.2775	0.0006858	4.3369	0.0023282	5.6144	0.003014	536.8457166645778	83.519	1.2672	83.519	83.12	84.388	0					55	29	3	0	0	0	0.52321	1	8681	8681		51.335	0.14276	1	1768300			19710	15119	16079	16102	21825	21825					0.13961880712918173
IMKKRKKL	8	Unmodified	_IMKKRKKL_					0	0	0		ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.2913818359375	2	522.857347	1043.70014	0.45965	0.00024033	-2.7749	-0.0014509	-2.3153	-0.0012106	522.8556218535512	81.434	0.94096	81.434	81.12	82.061	0					29	22	2	0	0	0	0.028476	1	8350	8350		42.474	7.2737	1	376550			19711	1796	16080	16103	21826	21826					0.18003828763812635
IMKMVKLDR	9	Unmodified	_IMKMVKLDR_					0	0	0		ENST00000463847.1_1_6:38110907-38120162:+|nuORF;ENSG00000156639|ENST00000287218|ZFAND3;C6orf106-ZFAND3|1|fusion	ENST00000463847.1_1_6:38110907-38120162:+|nuORF	ENST00000463847.1_1_6:38110907-38120162:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3297729492188	2	567.330304	1132.64606	-2.3399	-0.0013275	1.4113	0.00080067	-0.92857	-0.00052681	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.61208	1	14454	14454		30.504	1.3541	1	241060			19712	168	16081	16104	21827	21827					0.08503868549928484
IMKPQDFEYVW	11	Unmodified	_IMKPQDFEYVW_					0	0	0		ENSG00000124701|ENST00000244669|APOBEC2	ENSG00000124701|ENST00000244669|APOBEC2	ENSG00000124701|ENST00000244669|APOBEC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.7980041503906	3	485.904084	1454.69042	-1.5761	-0.00076583	-1.698	-0.00082505	-3.2741	-0.0015909	485.903472112212	50.219	0.78042	47.077	46.871	47.651	-3.1416					24	14	3	0	0	0	0.025908	1	2897	2897		34.087	6.4426	1	43058			19713	3672	16082	16105	21828	21828					-0.01873448822902901
IMKPQDFEYVW	11	Unmodified	_IMKPQDFEYVW_					0	0	0		ENSG00000124701|ENST00000244669|APOBEC2	ENSG00000124701|ENST00000244669|APOBEC2	ENSG00000124701|ENST00000244669|APOBEC2	MULTI-MATCH	OvCa9_classI_Rep2	2		3	485.904084	1454.69042	-0.94009	-0.00045679	-1.7525	-0.00085157	-2.6926	-0.0013084	485.90320174800763	49.789	0.89427	47.028	46.72	47.614	-2.7603	-0.024572	-3.7638E-05	NaN	34.087	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38260			19714	3672	16082	16105							-0.01873448822902901
IMKRILAL	8	Unmodified	_IMKRILAL_					0	0	0			REV__ENSG00000092148|ENST00000399332|HECTD1	REV__ENSG00000092148|ENST00000399332|HECTD1	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.2791748046875	2	479.317523	956.620493	-0.33313	-0.00015968	-1.4977	-0.00071786	-1.8308	-0.00087754	479.31662245270365	95.519	0.19794	94.491	94.367	94.565	-1.0281					5	3	2	0	0	0	0.028476	1	8589	8589		65.897	11.133	1	7695.9	+		19715	17263	16083	16106	21829	21829					0.14044762089804408
IMKSRGKEL	9	Unmodified	_IMKSRGKEL_					0	0	0			REV__ANKRD30A|p.K1183Sfs*12|1|0.04|ENSG00000148513|chr10:37219257-37219258|-/GTCATTTG|frameshift_variant	REV__ANKRD30A|p.K1183Sfs*12|1|0.04|ENSG00000148513|chr10:37219257-37219258|-/GTCATTTG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.27880859375	2	531.310426	1060.6063	1.8556	0.00098591	-1.6008	-0.00085052	0.25482	0.00013539	531.3095834511516	87.267	0.32387	87.267	87.054	87.378	0					11	7	2	0	0	0	0.027461	1	9211	9211		40.778	11.629	1	1501700	+		19716	15634	16084	16107	21830	21830					0.0784206487087431
IMKVAQAKL	9	Unmodified	_IMKVAQAKL_					0	0	0		ENSG00000155313|ENST00000400183|USP25;ENST00000540438.5_1_11:113669964-113691034:-|nuORF;nc|ENSG00000048028|Q96RU2-2|USP28;nc|ENSG00000155313|Q9UHP3|USP25;nc|ENSG00000048028|Q96RU2|USP28;nc|ENSG00000155313|Q9UHP3-1|USP25;ENSG00000048028|ENST00000696973|USP28	ENSG00000155313|ENST00000400183|USP25	ENSG00000155313|ENST00000400183|USP25	MULTI-MSMS	OvCa99_classI_Rep5	1	501.3168029785156	2	501.312438	1000.61032	-0.14591	-7.3144E-05	0.67281	0.00033729	0.5269	0.00026414	501.31255497573284	71.076	0.82927	71.076	70.8	71.629	0					50	20	4	0	0	0	0.29717	1	6851	6851		63.306	0	1	3029000			19717	5779	16085	16108	21831	21831					0.11004154364582064
IMKVKNEKL	9	Unmodified	_IMKVKNEKL_					0	0	0		ENST00000518542.1_1_8:19315287-19352580:-|nuORF;nc|ENSG00000147408|Q8TDX6-3|CSGALNACT1;ENSG00000147408|ENST00000692225|CSGALNACT1	ENST00000518542.1_1_8:19315287-19352580:-|nuORF	ENST00000518542.1_1_8:19315287-19352580:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.8368530273438	2	551.836277	1101.658	-0.84288	-0.00046513	-2.3055	-0.0012723	-3.1484	-0.0017374	551.8349014956834	108.98	1.763	107.26	106.87	108.63	-1.7256					79	33	4	0	0	0	0.16562	1	9994	9994		82.241	1.7859	1	318200			19718	5354	16086	16109	21832	21832					0.11123808564775572
IMKVLVDFL	9	Unmodified	_IMKVLVDFL_					0	0	0		ENST00000370800.4_1_X:133512044-133527531:+|nuORF	ENST00000370800.4_1_X:133512044-133527531:+|nuORF	ENST00000370800.4_1_X:133512044-133527531:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	539.3236694335938	2	539.322471	1076.63039	0.63559	0.00034279	4.0207	0.0021685	4.6563	0.0025112	539.3233602566299	141.19	1.3817	141.19	140.35	141.74	0					57	27	3	0	0	0	0.38529	1	16527	16527		53.351	2.016	1	346590			19719	10939	16087	16110	21833	21833					0.09513905304538639
IMLACLPGKL	10	Unmodified	_IMLACLPGKL_					0	0	0		nc|ENSG00000157388|Q01668-2|CACNA1D;nc|ENSG00000157388|Q01668-4|CACNA1D;CACNA1D|p.Q1955Pfs*19|1|0.09|ENSG00000157388|chr3:53808762-53808763|-/CTCCTCCTTCAGAGAGTGTTGTGCAG|frameshift_variant;nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D	nc|ENSG00000157388|Q01668-2|CACNA1D	nc|ENSG00000157388|Q01668-2|CACNA1D	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.8042602539062	2	529.808674	1057.60279	-1.3206	-0.00069964	-3.715	-0.0019682	-5.0355	-0.0026679	529.8038544668168	106.03	2.0556	104.01	103.55	105.6	-2.0161					158	39	6	0	0	0	0.23802	2	9632	9620;9632		88.643	8.9303	1	4614300			19720	15117	16088	16111	21834;21835	21835					0.0762967877265055
IMLDNQKLV	9	Unmodified	_IMLDNQKLV_					0	0	0		ENSG00000100908|ENST00000216799|EMC9	ENSG00000100908|ENST00000216799|EMC9	ENSG00000100908|ENST00000216799|EMC9	MULTI-MSMS	OvCa99_classI_Rep5	1	537.3057861328125	2	537.30481	1072.59507	1.326	0.00071244	0.79936	0.0004295	2.1253	0.0011419	537.305073906003	111.43	2.0374	111.43	111.02	113.06	0					107	44	4	0	0	0	0.025955	1	12689	12689		139.97	17.794	1	4205600			19721	2120	16089	16112	21836	21836					0.06167242776700732
IMLEALERV	9	Unmodified	_IMLEALERV_					0	0	0		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-MSMS	OvCa99_classI_Rep5	1	537.3062133789062	2	537.30481	1072.59507	1.326	0.00071244	0.79936	0.0004295	2.1253	0.0011419	537.305073906003	111.43	2.0374	111.43	111.02	113.06	0					107	44	4	0	0	0	0.018335	2	12664	12643;12664		148.99	44.24	1	4205600			19722	5114	16090	16113	21837;21838	21838					0.06167242776700732
IMLEALERV	9	Unmodified	_IMLEALERV_					0	0	0		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-MATCH	OvCa9_classI_Rep2	2		2	537.30481	1072.59507	-0.34409	-0.00018488	0.56505	0.00030361	0.22096	0.00011873	537.3051082394867	111.84	1.4782	111.7	111.32	112.8	-0.13961	0.11915	0.00043564	NaN	148.99	50	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74603			19723	5114	16090	16113							0.06167242776700732
IMLEALERV	9	Unmodified	_IMLEALERV_					0	0	0		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-MATCH	OvCa9_classI_Rep3	3		2	537.30481	1072.59507	2.6263	0.0014111	-2.6794	-0.0014396	-0.053054	-2.8506E-05	537.3034975705077	112.7	1.7595	111.62	111.22	112.98	-1.0753	0.038436	-0.0030509	NaN	148.99	58	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87147			19724	5114	16090	16113							0.06167242776700732
IMLEALERV	9	Oxidation (M)	_IM(Oxidation (M))LEALERV_		IM(1)LEALERV		IM(96)LEALERV	0	0	1		nc|ENSG00000224543|A8MWD9|SNRPGP15;ENSG00000143977|ENST00000272348|SNRPG	nc|ENSG00000224543|A8MWD9|SNRPGP15	nc|ENSG00000224543|A8MWD9|SNRPGP15	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.303955078125	2	545.302267	1088.58998	-0.8003	-0.0004364	0.24706	0.00013472	-0.55324	-0.00030168	545.3022463394525	103.44	2.9889	101.26	100.64	103.63	-2.1768					82	57	3	0	0	0	0.10502	2	9347	9292;9347		95.815	19.041	1	394450			19725	5114	16090	16114	21839;21840	21840		165			0.04922938914091901
IMLFCYSMI	9	Unmodified	_IMLFCYSMI_					0	0	0		ENSG00000183813|ENST00000330953|CCR4	ENSG00000183813|ENST00000330953|CCR4	ENSG00000183813|ENST00000330953|CCR4	MULTI-MSMS	OvCa99_classI_Rep5	1	561.3058471679688	2	560.765617	1119.51668	1.0955	0.00061432	-0.39782	-0.00022309	0.69768	0.00039124	561.2667839903111	161.23	0.95914	161.23	160.86	161.82	0					23	18	2	0	0	0	0.42057	1	18958	18958		50.025	4.0523	1	28993			19726	8110	16091	16115	21841	21841					-0.03829649124372736
IMLITVSYI	9	Unmodified	_IMLITVSYI_					0	0	0		ENSG00000187747|ENST00000345043|OR52B6	ENSG00000187747|ENST00000345043|OR52B6	ENSG00000187747|ENST00000345043|OR52B6	MULTI-MSMS	OvCa99_classI_Rep5	1	526.8068237304688	2	526.806654	1051.59875	0.89636	0.00047221	-2.4143	-0.0012718	-1.5179	-0.00079964	526.8052325126698	155.15	0.65085	155.15	154.88	155.53	0					24	12	3	0	0	0	0.29717	1	18191	18191		63.306	0	1	61968			19727	8429	16092	16116	21842	21842					0.07501912550583256
IMLLLMLNE	9	Oxidation (M)	_IMLLLM(Oxidation (M))LNE_		IM(0.03)LLLM(0.97)LNE		IM(-15)LLLM(15)LNE	0	0	1			REV__nc|ENSG00000284723|Q8NH09|OR8S1	REV__nc|ENSG00000284723|Q8NH09|OR8S1	MSMS	OvCa99_classI_Rep5	1	553.3046875	2	553.303421	1104.59229	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.432	1	51.432	50.932	51.932	0								0	0	0	0.11949	1	3968	3968		68.485	6.7934	2		+		19728	29201	16093	16117	21843	21843		644			0.044176513275488105
IMLMSSASLN	10	2 Oxidation (M)	_IM(Oxidation (M))LM(Oxidation (M))SSASLN_		IM(1)LM(1)SSASLN		IM(64)LM(64)SSASLN	0	0	2			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-MSMS	OvCa99_classI_Rep5	1	549.7639770507812	2	549.762117	1097.50968	1.0362	0.00056968	1.7488	0.00096145	2.7851	0.0015311	549.7628795568598	145.79	2.1821	145.79	145.27	147.45	0					112	44	4	0	0	0	0.42962	1	17109	17109		64.207	19.83	1	699190	+		19729	19163	16094	16118	21844	21844		439;440			-0.03517290471222623
IMLPSPWLN	9	Unmodified	_IMLPSPWLN_					0	0	0			REV__nc|ENSG00000091831|P03372-4|ESR1	REV__nc|ENSG00000091831|P03372-4|ESR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.3079833984375	2	535.788795	1069.56304	2.3059	0.0012355	-3.7113	-0.0019884	-1.4054	-0.00075298	535.7870876208083	100.53	0.44801	100.53	100.32	100.77	0					16	10	2	0	0	0	0.027462	1	11134	11134		37.159	21.517	1	649870	+		19730	16070	16095	16119	21845	21845					0.031038750935977077
IMLTLTKLH	9	Oxidation (M)	_IM(Oxidation (M))LTLTKLH_		IM(1)LTLTKLH		IM(63)LTLTKLH	0	0	1			REV__nc|ENSG00000182149|P53990-3|IST1	REV__nc|ENSG00000182149|P53990-3|IST1	MULTI-MSMS	OvCa9_classI_Rep3	3	543.3231201171875	2	543.323002	1084.63145	1.2599	0.00068455	-1.667	-0.00090572	-0.40706	-0.00022117	543.3219387842813	120.3	1.3009	119.27	118.92	120.22	-1.0271					57	25	3	0	0	0	0.29717	1	9161	9161		63.306	8.53	1	198450	+		19731	29038	16096	16120	21846	21846		643			0.09252119673442394
IMLTQFVSN	9	Unmodified	_IMLTQFVSN_					0	0	0		ENSG00000153292|ENST00000371253|ADGRF1;ENST00000477858.1_1_6:46967961-46969328:-|nuORF	ENSG00000153292|ENST00000371253|ADGRF1	ENSG00000153292|ENST00000371253|ADGRF1	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.3414306640625	2	526.775885	1051.53722	-1.4193	-0.00074765	4.3215	0.0022765	2.9022	0.0015288	526.7781123386475	87.444	0.46383	85.267	85.087	85.551	-2.1768					16	8	3	0	0	0	0.027426	1	5239	5239		47.657	0	1	54565			19732	5675	16097	16121	21847	21847					0.013509808512935706
IMLVIPNII	9	Unmodified	_IMLVIPNII_					0	0	0		tr|A0A7D7A3G9|A0A7D7A3G9_9CLOTserine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=serSPE=4SV=1	tr|A0A7D7A3G9|A0A7D7A3G9_9CLOTserine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=serSPE=4SV=1	tr|A0A7D7A3G9|A0A7D7A3G9_9CLOTserine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=serSPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	513.328125	2	513.325014	1024.63547	1.1851	0.00060836	-0.96302	-0.00049434	0.22213	0.00011402	513.8246530993847	67.449	2.102	64.562	64.137	66.239	-2.8873					146	41	6	0	0	0	0.50066	1	2903	2903		42.474	0	1	2025700			19733	36116	16098	16122	21848	21848					0.12414209167150148
IMMECTVLGR	10	Unmodified	_IMMECTVLGR_					0	0	0			REV__tr|A0A553SGK9|A0A553SGK9_NIACI23SrRNA(Uracil(1939)-C(5))-methyltransferaseRlmDOS=NialliacirculansOX=1397GN=rlmDPE=3SV=1	REV__tr|A0A553SGK9|A0A553SGK9_NIACI23SrRNA(Uracil(1939)-C(5))-methyltransferaseRlmDOS=NialliacirculansOX=1397GN=rlmDPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.8180541992188	2	576.78233	1151.55011	1.018	0.00058714	3.4172	0.001971	4.4351	0.0025581	576.7838459532899	102.04	0.55752	102.04	101.78	102.34	0					38	12	4	0	0	0	0.026931	1	11351	11351		30.318	8.3578	1	755410	+		19734	29715	16099	16123	21849	21849					-0.01960647352484557
IMMECTVLGR	10	Unmodified	_IMMECTVLGR_					0	0	0			REV__tr|A0A553SGK9|A0A553SGK9_NIACI23SrRNA(Uracil(1939)-C(5))-methyltransferaseRlmDOS=NialliacirculansOX=1397GN=rlmDPE=3SV=1	REV__tr|A0A553SGK9|A0A553SGK9_NIACI23SrRNA(Uracil(1939)-C(5))-methyltransferaseRlmDOS=NialliacirculansOX=1397GN=rlmDPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	576.78233	1151.55011	-0.62731	-0.00036182	9.7372	0.0056162	9.1098	0.0052544	576.787810494925	103.54	1.2057	102.1	101.81	103.02	-1.4347	0.045602	-0.00018346	NaN	45.972	62	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	476010	+		19735	29715	16099	16123							-0.01960647352484557
IMMIPNLVI	9	2 Oxidation (M)	_IM(Oxidation (M))M(Oxidation (M))IPNLVI_		IM(1)M(1)IPNLVI		IM(60)M(60)IPNLVI	0	0	2			REV__tr|A0A553SIF2|A0A553SIF2_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_14750PE=4SV=1	REV__tr|A0A553SIF2|A0A553SIF2_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_14750PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.2998046875	2	538.298139	1074.58172	-0.75919	-0.00040867	0.72652	0.00039108	-0.032669	-1.7586E-05	538.2983423174609	78.231	1.7602	75.415	75.018	76.779	-2.8165					66	36	2	0	0	0	0.32337	1	6314	6314		60.294	7.3573	1	1911100	+		19736	29888	16100	16124	21850	21850		656;657			0.04741668673136701
IMMLRLSLKEK	11	Unmodified	_IMMLRLSLKEK_					0	0	0		ENST00000356970.6_2_1:109486615-109490255:-|nuORF	ENST00000356970.6_2_1:109486615-109490255:-|nuORF	ENST00000356970.6_2_1:109486615-109490255:-|nuORF	MSMS	OvCa99_classI_Rep5	1	454.605712890625	3	454.605093	1360.79345	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.901	1	22.901	22.401	23.401	0								0	0	0	0.19474	1	267	267		15.333	0	1				19737	10704	16101	16125	21851	21851					0.12748340364078103
IMMQVARLS	9	Unmodified	_IMMQVARLS_					0	0	0			REV__ENSG00000116194|ENST00000234816|ANGPTL1	REV__ENSG00000116194|ENST00000234816|ANGPTL1	MULTI-SECPEP	OvCa9_classI_Rep3	3	524.3126220703125	2	524.78573	1047.55691	0.88531	0.0004646	2.621	0.0013754	3.5063	0.00184	524.7870553547411	121.83	1.0477	120.8	120.43	121.48	-1.0286					27	10	4	0	0	0	0.027462	1	9415	9415		21.96	10.449	1	73981	+		19738	18290	16102	16126	21852	21852					0.035030335904139065
IMMQVARLS	9	Unmodified	_IMMQVARLS_					0	0	0			REV__ENSG00000116194|ENST00000234816|ANGPTL1	REV__ENSG00000116194|ENST00000234816|ANGPTL1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	524.78573	1047.55691	2.004	0.0010517	4.7409	0.002488	6.7449	0.0035396	525.2901894948498	120.87	0.27037	120.87	120.7	120.97	0	0.013839	0.0013503	NaN	32.812	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74606	+		19739	18290	16102	16126							0.035030335904139065
IMMQVARLS	9	Unmodified	_IMMQVARLS_					0	0	0			REV__ENSG00000116194|ENST00000234816|ANGPTL1	REV__ENSG00000116194|ENST00000234816|ANGPTL1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	524.78573	1047.55691	-0.84643	-0.0004442	3.9742	0.0020856	3.1277	0.0016414	524.7879345107826	121.09	0.59229	120.89	120.61	121.2	-0.19718	0.036326	0.00054554	NaN	32.812	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46543	+		19740	18290	16102	16126							0.035030335904139065
IMMTKKTMYNL	11	Unmodified	_IMMTKKTMYNL_					0	0	0			REV__tr|A0A7D6W3N6|A0A7D6W3N6_9CLOTDNAtopoisomerase1OS=ClostridiumintestinaleOX=36845GN=topAPE=3SV=1	REV__tr|A0A7D6W3N6|A0A7D6W3N6_9CLOTDNAtopoisomerase1OS=ClostridiumintestinaleOX=36845GN=topAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.2373962402344	3	458.571172	1372.69169	-0.31582	-0.00014482	3.6446	0.0016713	3.3288	0.0015265	458.5721586472706	41.334	0.31305	41.334	41.149	41.462	0					14	6	3	0	0	0	0.025722	1	2555	2555		34.087	9.0187	1	100290	+		19741	31919	16103	16127	21853	21853					0.02024725950013817
IMNEDLGNCV	10	Unmodified	_IMNEDLGNCV_					0	0	0			REV__tr|A0A553ST85|A0A553ST85_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04550PE=4SV=1	REV__tr|A0A553ST85|A0A553ST85_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04550PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.3123168945312	2	554.244092	1106.47363	-0.27897	-0.00015462	-2.9255	-0.0016214	-3.2045	-0.0017761	554.2423386319039	69.088	3.351	69.088	67.916	71.267	0					145	82	2	0	0	0	0.026465	1	6496	6496		72.879	4.0924	1	435360	+		19742	30930	16104	16128	21854	21854					-0.07534747648082885
IMNPSSEEPD	10	Unmodified	_IMNPSSEEPD_					0	0	0			REV__nc|ENSG00000182732|P49758-6|RGS6	REV__nc|ENSG00000182732|P49758-6|RGS6	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.8148193359375	2	559.737154	1117.45975	2.2545	0.0012619	0.30786	0.00017232	2.5623	0.0014342	560.2391973506077	125.67	0.18436	125.67	125.53	125.71	0					5	3	2	0	0	0	0.026606	1	14509	14509		44.377	0	1	28668	+		19743	22314	16105	16129	21855	21855					-0.09427701875551975
IMPDVQDPK	9	Unmodified	_IMPDVQDPK_					0	0	0		nc|ENSG00000122483|Q5T9S5|CCDC18;ENSG00000122483|ENST00000690025|CCDC18	nc|ENSG00000122483|Q5T9S5|CCDC18	nc|ENSG00000122483|Q5T9S5|CCDC18	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.2967529296875	2	521.765517	1041.51648	-0.49957	-0.00026066	-0.080989	-4.2257E-05	-0.58056	-0.00030291	522.2663834999963	99.827	0.34641	98.996	98.865	99.212	-0.83051					9	6	2	0	0	0	0.027461	1	9097	9097		32.812	6.1195	1	6729.8			19744	3535	16106	16130	21856	21856					-0.00261609528365625
IMPLKKVKMR	10	Unmodified	_IMPLKKVKMR_					0	0	0			REV__ENSG00000152484|ENST00000282344|USP12	REV__ENSG00000152484|ENST00000282344|USP12	MULTI-SECPEP	OvCa9_classI_Rep4_	4	415.2132568359375	3	415.26289	1242.76684	-0.9019	-0.00037453	-1.9941	-0.00082807	-2.896	-0.0012026	415.2619179826264	43.213	0.63	40.205	40.063	40.693	-3.0074					14	11	2	0	0	0	0.027117	1	2108	2108		21.686	8.1778	1	9212.1	+		19745	20290	16107	16131	21857	21857					0.15516696263398444
IMPQPITSQ	9	Unmodified	_IMPQPITSQ_					0	0	0			REV__nc|ENSG00000171931|Q5XX13-3|FBXW10	REV__nc|ENSG00000171931|Q5XX13-3|FBXW10	MULTI-MSMS	OvCa9_classI_Rep3	3	507.7672424316406	2	507.76806	1013.52157	-0.36325	-0.00018445	-2.974	-0.0015101	-3.3372	-0.0016945	507.76638761877894	131.88	1.6751	130.75	129.96	131.63	-1.1249					88	33	4	0	0	0	0.53483	1	10545	10545		39.253	5.0803	1	127470	+		19746	21658	16108	16132	21858	21858					0.01534694334247888
IMQNWAGIE	9	Unmodified	_IMQNWAGIE_					0	0	0		SART3|p.R480G|1|0.11|ENSG00000075856|chr12:108536522-108536522|T/C|missense_variant	SART3|p.R480G|1|0.11|ENSG00000075856|chr12:108536522-108536522|T/C|missense_variant	SART3|p.R480G|1|0.11|ENSG00000075856|chr12:108536522-108536522|T/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.27880859375	2	531.257859	1060.50117	1.7565	0.00093313	2.8734	0.0015265	4.6298	0.0024596	531.2582650073927	87.256	0.65752	87.256	87.096	87.754	0					21	15	3	0	0	0	0.027448	1	9211	9211		44.117	4.864	1	661420			19747	32799	16109	16133	21859	21859					-0.02666476325543954
IMRGDKTKGDK	11	Unmodified	_IMRGDKTKGDK_					0	0	0			REV__tr|A0A553SH72|A0A553SH72_NIACIArabinanaseOS=NialliacirculansOX=1397GN=CEQ21_12325PE=3SV=1	REV__tr|A0A553SH72|A0A553SH72_NIACIArabinanaseOS=NialliacirculansOX=1397GN=CEQ21_12325PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	624.0120239257812	2	624.840079	1247.66561	-0.22912	-0.00014316	-3.0691	-0.0019177	-3.2982	-0.0020608	624.8382061455204	77.473	1.1138	74.657	74.44	75.554	-2.8165					36	22	2	0	0	0	0.025487	1	6230	6230		38.754	8.4359	1	183120	+		19748	29778	16110	16134	21860	21860					0.05167916094387692
IMRIALGGL	9	Unmodified	_IMRIALGGL_					0	0	0		CON__Q6T181;nc|ENSG00000129214|P04278-2|SHBG;nc|ENSG00000129214|P04278-4|SHBG;nc|ENSG00000129214|P04278-3|SHBG;nc|ENSG00000129214|P04278-5|SHBG;ENSG00000129214|ENST00000380450|SHBG	CON__Q6T181	CON__Q6T181	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.2658386230469	2	472.291505	942.568457	0.6346	0.00029972	-4.1714	-0.0019701	-3.5368	-0.0016704	472.2893962567027	102.73	0.83936	100.53	100.2	101.04	-2.1994					34	15	3	0	0	0	0.027062	1	9288	9288		83.287	14.802	1	87587		+	19749	655	16111	16135	21861	21861					0.09487598676059861
IMRIALGGL	9	Unmodified	_IMRIALGGL_					0	0	0		CON__Q6T181;nc|ENSG00000129214|P04278-2|SHBG;nc|ENSG00000129214|P04278-4|SHBG;nc|ENSG00000129214|P04278-3|SHBG;nc|ENSG00000129214|P04278-5|SHBG;ENSG00000129214|ENST00000380450|SHBG	CON__Q6T181	CON__Q6T181	MULTI-MATCH	OvCa9_classI_Rep2	2		2	472.291505	942.568457	-1.2302	-0.000581	-2.3108	-0.0010914	-3.541	-0.0016724	472.2902581332652	101.19	0.89088	100.43	100.07	100.96	-0.76401	-0.048561	0.00096235	NaN	83.287	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79711		+	19750	655	16111	16135							0.09487598676059861
IMRKLSKT	8	Unmodified	_IMRKLSKT_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-2|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.248779296875	2	488.802237	975.589921	0.33316	0.00016285	-4.2736	-0.0020889	-3.9404	-0.0019261	488.80029938633123	66.797	0.36377	66.797	66.575	66.939	0					12	8	2	0	0	0	0.028476	1	6194	6194		10.866	0	1	296180			19751	4713	16112	16136	21862	21862					0.1011498370477284
IMRLNILPR	9	Unmodified	_IMRLNILPR_					0	0	0		ENST00000452622.1_1_7:562147-562501:+|nuORF	ENST00000452622.1_1_7:562147-562501:+|nuORF	ENST00000452622.1_1_7:562147-562501:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	563.3494873046875	2	563.349886	1124.68522	-0.74417	-0.00041923	-2.7127	-0.0015282	-3.4569	-0.0019474	563.3482843172422	89.471	1.7706	87.368	86.826	88.596	-2.1029					104	34	4	0	0	0	0.53957	1	5516	5516		38.806	1.647	1	680300			19752	12056	16113	16137	21863	21863					0.12786336895806016
IMRNLENIE	9	Unmodified	_IMRNLENIE_					0	0	0			REV__nc|ENSG00000290966|A6NCN2|KRT87P	REV__nc|ENSG00000290966|A6NCN2|KRT87P	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.2984008789062	2	566.294973	1130.57539	0.65693	0.00037202	2.1646	0.0012258	2.8215	0.0015978	566.2962153602747	102.09	1.5172	99.889	99.471	100.99	-2.1994					58	28	3	0	0	0	0.28934	1	9178	9178		64.207	0.67341	1	297420	+	+	19753	16181	16114	16138	21864	21864					0.01532866765955987
IMSIVLGILLF	11	Unmodified	_IMSIVLGILLF_					0	0	0		tr|A0A553SIH5|A0A553SIH5_NIACINADHdehydrogenasesubunit4LOS=NialliacirculansOX=1397GN=CEQ21_14845PE=4SV=1	tr|A0A553SIH5|A0A553SIH5_NIACINADHdehydrogenasesubunit4LOS=NialliacirculansOX=1397GN=CEQ21_14845PE=4SV=1	tr|A0A553SIH5|A0A553SIH5_NIACINADHdehydrogenasesubunit4LOS=NialliacirculansOX=1397GN=CEQ21_14845PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	609.3358154296875	2	609.880153	1217.74575	-0.019057	-1.1623E-05	3.1853	0.0019427	3.1663	0.001931	609.8821247014063	104.87	0.55643	104.87	104.58	105.13	0					20	12	3	0	0	0	0.025668	1	11744	11744		25.574	0	1	329760			19754	33382	16115	16139	21865	21865					0.1455900943551569
IMSLLAIAVD	10	Unmodified	_IMSLLAIAVD_					0	0	0		ENSG00000282608|ENST00000241356|ADORA3;ENSG00000121933|ENST00000369716|TMIGD3	ENSG00000282608|ENST00000241356|ADORA3	ENSG00000282608|ENST00000241356|ADORA3	MULTI-MSMS	OvCa9_classI_Rep2	2	523.30322265625	2	523.301736	1044.58892	-0.69596	-0.0003642	4.2173	0.0022069	3.5214	0.0018427	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.6104	1	13762	13762		40.778	12.896	1	130240			19755	9605	16116	16140	21866	21866					0.06840724545190824
IMSRAMKIH	9	Unmodified	_IMSRAMKIH_					0	0	0		tr|A0A7D6VPQ1|A0A7D6VPQ1_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23830PE=3SV=1	tr|A0A7D6VPQ1|A0A7D6VPQ1_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23830PE=3SV=1	tr|A0A7D6VPQ1|A0A7D6VPQ1_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23830PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.324462890625	2	543.799171	1085.58379	2.4684	0.0013423	-3.769	-0.0020496	-1.3006	-0.00070724	544.3006063782567	75.771	0.51419	75.771	75.601	76.115	0					16	12	2	0	0	0	0.027441	1	7536	7536		49.442	5.3247	1	235300			19756	34788	16117	16141	21867	21867					0.0444214220158301
IMSYLSIFF	9	Unmodified	_IMSYLSIFF_					0	0	0		tr|A0A7D6ZFE3|A0A7D6ZFE3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17595PE=4SV=1	tr|A0A7D6ZFE3|A0A7D6ZFE3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17595PE=4SV=1	tr|A0A7D6ZFE3|A0A7D6ZFE3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17595PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.7916259765625	2	560.791004	1119.56745	0.99026	0.00055533	-1.4309	-0.00080242	-0.44061	-0.00024709	560.7902547795154	65.061	2.6294	61.576	61.114	63.744	-3.4854					165	53	6	0	0	0	0.44294	1	4723	4723		47.916	5.0513	1	6333200			19757	35507	16118	16142	21868	21868					0.012453395165039183
IMSYNRPPA	9	Unmodified	_IMSYNRPPA_					0	0	0			REV__ENST00000509177.1_1_8:15480615-15508356:+|nuORF	REV__ENST00000509177.1_1_8:15480615-15508356:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	524.7645263671875	2	524.765852	1047.51715	1.2156	0.00063789	-1.3641	-0.00071581	-0.14848	-7.7915E-05	524.7650401246628	128.53	2.025	128.31	127.54	129.56	-0.22697					74	40	3	0	0	0	0.68424	1	12586	12586		21.96	0	1	156760	+		19758	17675	16119	16143	21869	21869					-0.004707700886456223
IMTFVIIRLYR	11	Unmodified	_IMTFVIIRLYR_					0	0	0			REV__tr|A0A7D6VQN0|A0A7D6VQN0_9CLOTPTSsystemmannose/fructose/sorbosefamilytransportersubunitIIDOS=ClostridiumintestinaleOX=36845GN=HZF06_04035PE=4SV=1	REV__tr|A0A7D6VQN0|A0A7D6VQN0_9CLOTPTSsystemmannose/fructose/sorbosefamilytransportersubunitIIDOS=ClostridiumintestinaleOX=36845GN=HZF06_04035PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	475.60968017578125	3	475.619731	1423.83736	0.44224	0.00021034	3.5738	0.0016998	4.016	0.0019101	475.6208614407113	81.355	0.55689	79.032	78.802	79.359	-2.3226					19	10	2	0	0	0	0.025445	1	4529	4529		28.577	0	1	84894	+		19759	31340	16120	16144	21870	21870					0.1423969285272051
IMTGFASPL	9	Unmodified	_IMTGFASPL_					0	0	0			REV__ENST00000287701.14_1_8:28909287-28909479:+|nuORF	REV__ENST00000287701.14_1_8:28909287-28909479:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	468.7491760253906	2	468.746596	935.478639	-0.10314	-4.8347E-05	3.9959	0.0018731	3.8927	0.0018247	468.7483810811025	60.351	0.656	60.351	60.116	60.772	0					32	15	3	0	0	0	0.21395	1	5264	5264		73.975	11.867	1	2053900	+		19760	24143	16121	16145	21871	21871					0.008319242768266122
IMTRFIMLL	9	Oxidation (M)	_IM(Oxidation (M))TRFIMLL_		IM(1)TRFIMLL		IM(44)TRFIM(-44)LL	0	0	1			REV__ENST00000376083.7_2_9:88248276-88257764:-|nuORF	REV__ENST00000376083.7_2_9:88248276-88257764:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	577.333984375	2	577.32723	1152.63991	1.2199	0.00070426	3.0512	0.0017616	4.2711	0.0024658	577.3288770850424	130.08	6.9884	130.08	128.32	135.31	0					388	149	8	0	0	0	0.27001	1	15300	15300		66.429	9.7082	2	7493100	+		19761	25096	16122	16146	21872	21872		570			0.06969350318422585
IMTRILHSTGL	11	Unmodified	_IMTRILHSTGL_					0	0	0		ENSG00000275835|ENST00000615383|TUBGCP5;nc|ENSG00000275835|Q96RT8-2|TUBGCP5	ENSG00000275835|ENST00000615383|TUBGCP5	ENSG00000275835|ENST00000615383|TUBGCP5	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.572509765625	3	414.572669	1240.69618	0.49463	0.00020506	-3.3735	-0.0013986	-2.8789	-0.0011935	414.5712127728802	68.583	1.5192	65.093	64.769	66.288	-3.4902					83	30	4	0	0	0	0.67712	1	5097	5097		37.508	0	1	555690			19762	9575	16123	16147	21873	21873					0.08545694479425947
IMTYLKEL	8	Unmodified	_IMTYLKEL_					0	0	0		tr|A0A7D6ZZ07|A0A7D6ZZ07_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04510PE=4SV=1	tr|A0A7D6ZZ07|A0A7D6ZZ07_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04510PE=4SV=1	tr|A0A7D6ZZ07|A0A7D6ZZ07_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04510PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.78619384765625	2	505.783179	1009.5518	-0.47497	-0.00024023	4.0137	0.0020301	3.5387	0.0017898	505.78514479679933	74.884	0.81977	71.654	71.144	71.963	-3.2308					32	16	3	0	0	0	0.57878	1	5878	5878		68.485	5.1784	1	568280			19763	35938	16124	16148	21874	21874					0.047410529994408535
IMTYLKEL	8	Unmodified	_IMTYLKEL_					0	0	0		tr|A0A7D6ZZ07|A0A7D6ZZ07_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04510PE=4SV=1	tr|A0A7D6ZZ07|A0A7D6ZZ07_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04510PE=4SV=1	tr|A0A7D6ZZ07|A0A7D6ZZ07_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04510PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	505.783179	1009.5518	-0.80742	-0.00040838	4.449	0.0022502	3.6416	0.0018419	505.78523997843763	73.937	2.248	71.966	71.273	73.521	-1.9711	0.10302	8.0259E-05	NaN	68.485	110	42	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127060			19764	35938	16124	16148							0.047410529994408535
IMTYLKEL	8	Unmodified	_IMTYLKEL_					0	0	0		tr|A0A7D6ZZ07|A0A7D6ZZ07_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04510PE=4SV=1	tr|A0A7D6ZZ07|A0A7D6ZZ07_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04510PE=4SV=1	tr|A0A7D6ZZ07|A0A7D6ZZ07_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04510PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	505.783179	1009.5518	-0.85821	-0.00043407	4.4437	0.0022476	3.5855	0.0018135	505.78540099827137	74.38	1.2764	71.969	71.45	72.726	-2.4106	0.10632	7.4904E-05	NaN	68.485	39	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39857			19765	35938	16124	16148							0.047410529994408535
IMVDEMVNQY	10	Oxidation (M)	_IM(Oxidation (M))VDEMVNQY_		IM(1)VDEMVNQY		IM(66)VDEM(-66)VNQY	0	0	1		tr|A0A553SQV1|A0A553SQV1_NIACIATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_07280PE=4SV=1	tr|A0A553SQV1|A0A553SQV1_NIACIATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_07280PE=4SV=1	tr|A0A553SQV1|A0A553SQV1_NIACIATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_07280PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	629.27978515625	2	629.278131	1256.54171	2.2285	0.0014023	0.040168	2.5277E-05	2.2686	0.0014276	629.278149717093	117.77	1.9644	117.77	117.46	119.43	0					103	41	3	0	0	0	0.41408	1	13483	13483		66.429	8.183	2	5902300			19766	34201	16125	16149	21875	21875		755			-0.07629922788100885
IMVDEMVNQY	10	Oxidation (M)	_IM(Oxidation (M))VDEMVNQY_		IM(1)VDEMVNQY		IM(66)VDEM(-66)VNQY	0	0	1		tr|A0A553SQV1|A0A553SQV1_NIACIATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_07280PE=4SV=1	tr|A0A553SQV1|A0A553SQV1_NIACIATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_07280PE=4SV=1	tr|A0A553SQV1|A0A553SQV1_NIACIATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_07280PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	629.2778930664062	2	629.278131	1256.54171	-2.0177	-0.0012697	1.8196	0.001145	-0.1981	-0.00012466	629.2792052758709	117.72	2.1801	117.57	117.19	119.37	-0.14755					115	43	5	0	0	0	0.41408	1	11302	11302		66.429	13.493	2	400120			19767	34201	16125	16149	21876	21876		755			-0.07629922788100885
IMVDEMVNQY	10	Oxidation (M)	_IM(Oxidation (M))VDEMVNQY_		IM(1)VDEMVNQY		IM(57)VDEM(-57)VNQY	0	0	1		tr|A0A553SQV1|A0A553SQV1_NIACIATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_07280PE=4SV=1	tr|A0A553SQV1|A0A553SQV1_NIACIATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_07280PE=4SV=1	tr|A0A553SQV1|A0A553SQV1_NIACIATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_07280PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	629.2788696289062	2	629.278131	1256.54171	0.35686	0.00022457	-0.72731	-0.00045768	-0.37045	-0.00023312	629.2776166933829	118.32	2.3254	117.29	116.93	119.26	-1.0324					108	46	4	0	0	0	0.48198	2	8908	8908;8945		56.721	8.7615	2	584120			19768	34201	16125	16149	21877;21878	21877		755			-0.07629922788100885
IMVEHLKE	8	Unmodified	_IMVEHLKE_					0	0	0			REV__tr|A0A7D7A365|A0A7D7A365_9CLOTUDP-N-acetylglucosamine4,6-dehydratase(Inverting)OS=ClostridiumintestinaleOX=36845GN=pseBPE=3SV=1	REV__tr|A0A7D7A365|A0A7D7A365_9CLOTUDP-N-acetylglucosamine4,6-dehydratase(Inverting)OS=ClostridiumintestinaleOX=36845GN=pseBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	499.7682800292969	2	499.770603	997.526652	-1.208	-0.00060371	-2.7877	-0.0013932	-3.9956	-0.0019969	499.7689113094421	103.18	0.93729	102.5	102.18	103.12	-0.68459					43	18	3	0	0	0	0.68714	1	9535	9535		45.952	1.5748	1	278080	+		19769	32570	16126	16150	21879	21879					0.027789981968680877
IMVHSPTK	8	Unmodified	_IMVHSPTK_					0	0	0		ENST00000401044.7_1_1:59134235-59156019:-|nuORF;ENSG00000162601|ENST00000472487|MYSM1	ENST00000401044.7_1_1:59134235-59156019:-|nuORF	ENST00000401044.7_1_1:59134235-59156019:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	456.7979736328125	2	456.752213	911.489873	0.19568	8.9376E-05	-3.449	-0.0015753	-3.2533	-0.001486	456.75054656293696	103.43	0.64172	102.75	102.48	103.12	-0.68459					19	12	2	0	0	0	0.028476	1	9568	9568		44.117	0	1	23737			19770	6200	16127	16151	21880	21880					0.030587463709593976
IMVIMLILI	9	Unmodified	_IMVIMLILI_					0	0	0			REV__tr|A0A553STH4|A0A553STH4_NIACIMembranetransportproteinOS=NialliacirculansOX=1397GN=CEQ21_05050PE=4SV=1	REV__tr|A0A553STH4|A0A553STH4_NIACIMembranetransportproteinOS=NialliacirculansOX=1397GN=CEQ21_05050PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.262451171875	2	529.839442	1057.66433	1.9266	0.0010208	0.70572	0.00037392	2.6323	0.0013947	529.8397850651429	91.413	0.69271	91.413	90.976	91.668	0					32	16	3	0	0	0	0.027462	1	9796	9796		29.842	8.1392	1	617910	+		19771	30963	16128	16152	21881	21881					0.13780610471940236
IMVLVDYE	8	Oxidation (M)	_IM(Oxidation (M))VLVDYE_		IM(1)VLVDYE		IM(75)VLVDYE	0	0	1			REV__tr|A0A553SME0|A0A553SME0_NIACIGAFdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22410PE=3SV=1	REV__tr|A0A553SME0|A0A553SME0_NIACIGAFdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22410PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	499.2492370605469	2	499.249169	996.483784	2.0486	0.0010228	-1.8089	-0.0009031	0.23969	0.00011966	499.24810602999514	120.28	3.1366	120.28	120	123.14	0					173	70	4	0	0	0	0.52992	1	13856	13856		74.517	11.538	1	6606300	+		19772	30320	16129	16153	21882	21882		665			-0.014598166512200805
IMVLVNILF	9	Unmodified	_IMVLVNILF_					0	0	0			REV__MAGEA1|p.I197N|1|0.1|ENSG00000198681|chrX:153182979-153182979|T/A|missense_variant	REV__MAGEA1|p.I197N|1|0.1|ENSG00000198681|chrX:153182979-153182979|T/A|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	531.3291015625	2	531.325014	1060.63547	2.1051	0.0011185	2.6876	0.001428	4.7927	0.0025465	531.326388554763	80.162	3.2752	80.162	79.119	82.394	0					214	79	5	0	0	0	0.25214	1	8261	8261		68.485	8.3664	1	30615000	+		19773	28638	16130	16154	21883	21883					0.10758209167124733
IMVMLPLLL	9	Oxidation (M)	_IM(Oxidation (M))VMLPLLL_		IM(1)VMLPLLL		IM(34)VM(-34)LPLLL	0	0	1			REV__tr|A0A553SFY8|A0A553SFY8_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09765PE=4SV=1	REV__tr|A0A553SFY8|A0A553SFY8_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09765PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.8251953125	2	529.82125	1057.62795	1.0185	0.00053961	3.3026	0.0017498	4.3211	0.0022894	529.8228960607835	150.49	2.2581	150.49	150.14	152.4	0					127	45	5	0	0	0	0.22187	1	17600	17600		72.62	6.1906	2	1624000	+		19774	29638	16131	16155	21884	21884		649			0.10143733575227998
IMVPVTKR	8	Unmodified	_IMVPVTKR_					0	0	0			REV__tr|A0A7D6VPE6|A0A7D6VPE6_9CLOTRodshape-determiningproteinMreDOS=ClostridiumintestinaleOX=36845GN=mreDPE=3SV=1	REV__tr|A0A7D6VPE6|A0A7D6VPE6_9CLOTRodshape-determiningproteinMreDOS=ClostridiumintestinaleOX=36845GN=mreDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.2899475097656	2	472.291505	942.568457	-0.19425	-9.1743E-05	-4.0435	-0.0019097	-4.2378	-0.0020015	472.2894731910647	99.885	1.522	97.559	97.212	98.734	-2.3253					67	29	3	0	0	0	0.67745	1	8903	8903		47.916	3.3845	1	675740	+		19775	31240	16132	16156	21885	21885					0.09487598676059861
IMVTGLYEKP	10	Unmodified	_IMVTGLYEKP_					0	0	0		nc|ENSG00000189013|Q99706-5|KIR2DL4;nc|ENSG00000189013|Q99706-4|KIR2DL4;ENSG00000189013|ENST00000345540|KIR2DL4;nc|ENSG00000189013|Q99706-2|KIR2DL4;nc|ENSG00000189013|Q99706|KIR2DL4	nc|ENSG00000189013|Q99706-5|KIR2DL4	nc|ENSG00000189013|Q99706-5|KIR2DL4	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.2849731445312	2	575.812467	1149.61038	-0.1647	-9.4839E-05	2.7824	0.0016021	2.6176	0.0015073	575.8139283587309	31.981	0.24801	31.981	31.857	32.105	0					7	4	2	0	0	0	0.027056	1	1348	1348		35.618	5.3006	1	24273			19776	8526	16133	16157	21886	21886					0.04156109573887079
IMVTLMVAKW	10	Oxidation (M)	_IM(Oxidation (M))VTLMVAKW_		IM(0.867)VTLM(0.133)VAKW		IM(8.1)VTLM(-8.1)VAKW	0	0	1		nc|ENSG00000011021|P51797-6|CLCN6;ENSG00000011021|ENST00000346436|CLCN6;nc|ENSG00000011021|P51797-5|CLCN6	nc|ENSG00000011021|P51797-6|CLCN6	nc|ENSG00000011021|P51797-6|CLCN6	MULTI-MSMS	OvCa99_classI_Rep5	1	604.3360595703125	2	604.332513	1206.65047	1.4365	0.0008681	0.49312	0.00029801	1.9296	0.0011661	604.3327443764483	146.08	0.64899	146.08	145.73	146.38	0					32	12	3	0	0	0	0.26627	1	17074	17074		84.916	13.038	2	244610			19777	954	16134	16158	21887	21887		30			0.0554133297282533
IMWSIIKRLWL	11	Unmodified	_IMWSIIKRLWL_					0	0	0			REV__ENST00000392373.6_1_12:131306299-131311802:-|nuORF	REV__ENST00000392373.6_1_12:131306299-131311802:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	486.9591979980469	3	486.959976	1457.8581	-4.7826	-0.0023289	2.6764	0.0013033	-2.1062	-0.0010256	486.9610953135575	160.39	2.6298	160.16	159.25	161.88	-0.22696					128	53	4	0	0	0	0.72538	1	16325	16325		10.587	0.4829	1	96650	+		19778	25258	16135	16159	21888	21888					0.14748283232393078
IMYKWRIQP	9	Unmodified	_IMYKWRIQP_					0	0	0			REV__ENST00000585799.5_1_19:11132109-11172489:+|nuORF	REV__ENST00000585799.5_1_19:11132109-11172489:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	412.2318115234375	3	412.230355	1233.66923	1.934	0.00079726	1.3418	0.00055315	3.2758	0.0013504	412.2308161483838	65.879	3.828	62.933	62.452	66.28	-2.9459					181	75	4	0	0	0	0.6653	1	2737	2737		24.519	9.1861	1	1016400	+		19779	27860	16136	16160	21889	21889					0.06174630658915703
IMYLTLQL	8	Unmodified	_IMYLTLQL_					0	0	0		nc|ENSG00000164066|Q9ULD6-2|INTU;nc|ENSG00000164066|Q9ULD6-3|INTU;nc|ENSG00000164066|Q9ULD6-4|INTU;ENSG00000164066|ENST00000335251|INTU	nc|ENSG00000164066|Q9ULD6-2|INTU	nc|ENSG00000164066|Q9ULD6-2|INTU	MULTI-MSMS	OvCa99_classI_Rep5	1	497.78973388671875	2	497.785721	993.55689	2.3602	0.0011749	3.6887	0.0018362	6.049	0.0030111	497.78745467884704	91.646	0.84479	91.646	91.372	92.216	0					53	19	4	0	0	0	0.36941	1	9893	9893		94.006	6.2521	1	8536200			19780	6399	16137	16161	21890	21890					0.05985356862061053
IMYTSGTTGF	10	Oxidation (M)	_IM(Oxidation (M))YTSGTTGF_		IM(1)YTSGTTGF		IM(53)YTSGTTGF	0	0	1		tr|A0A553SJR4|A0A553SJR4_NIACI2-succinylbenzoate--CoAligaseOS=NialliacirculansOX=1397GN=menEPE=3SV=1	tr|A0A553SJR4|A0A553SJR4_NIACI2-succinylbenzoate--CoAligaseOS=NialliacirculansOX=1397GN=menEPE=3SV=1	tr|A0A553SJR4|A0A553SJR4_NIACI2-succinylbenzoate--CoAligaseOS=NialliacirculansOX=1397GN=menEPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	547.2501831054688	2	547.247157	1092.47976	2.1565	0.0011802	3.3896	0.001855	5.5462	0.0030351	547.2487869117031	121.88	0.65315	121.88	121.57	122.22	0					28	13	3	0	0	0	0.50656	1	14027	14027		53.351	7.3995	1	245620			19781	33535	16138	16162	21891	21891		736			-0.06277906144919143
INAARRFDP	9	Unmodified	_INAARRFDP_					0	0	0			REV__tr|A0A553SU45|A0A553SU45_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06315PE=4SV=1	REV__tr|A0A553SU45|A0A553SU45_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06315PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.3346557617188	2	530.28834	1058.56213	-0.7568	-0.00040132	-0.73497	-0.00038975	-1.4918	-0.00079107	530.2877828408696	96.675	1.031	94.846	94.621	95.652	-1.8286					40	19	3	0	0	0	0.027462	1	6440	6440		17.365	3.2278	1	165050	+		19782	31037	16139	16163	21892	21892					0.035187967688898425
INAARRFDP	9	Unmodified	_INAARRFDP_					0	0	0			REV__tr|A0A553SU45|A0A553SU45_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06315PE=4SV=1	REV__tr|A0A553SU45|A0A553SU45_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06315PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	530.28834	1058.56213	2.4061	0.0012759	-0.43642	-0.00023143	1.9697	0.0010445	530.2881338750143	94.882	0.21653	94.882	94.732	94.949	0	-0.011868	0.00075075	NaN	17.365	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	361820	+		19783	31037	16139	16163							0.035187967688898425
INAARRFDP	9	Unmodified	_INAARRFDP_					0	0	0			REV__tr|A0A553SU45|A0A553SU45_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06315PE=4SV=1	REV__tr|A0A553SU45|A0A553SU45_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06315PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.28834	1058.56213	-0.64796	-0.00034361	-0.81813	-0.00043384	-1.4661	-0.00077745	530.2878187482424	95.919	1.0437	94.891	94.565	95.609	-1.0281	-0.0037181	0.00034592	NaN	17.365	42	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108330	+		19784	31037	16139	16163							0.035187967688898425
INAARRFDP	9	Unmodified	_INAARRFDP_					0	0	0			REV__tr|A0A553SU45|A0A553SU45_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06315PE=4SV=1	REV__tr|A0A553SU45|A0A553SU45_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06315PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	530.28834	1058.56213	0.01349	7.1535E-06	-1.7732	-0.00094033	-1.7598	-0.00093318	530.2873072984708	97.337	1.0645	94.958	94.611	95.675	-2.3786	0.063864	-0.00066705	NaN	17.365	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153940	+		19785	31037	16139	16163							0.035187967688898425
INAFDCITLQN	11	Unmodified	_INAFDCITLQN_					0	0	0			REV__tr|A0A553SUP2|A0A553SUP2_NIACIUvrABCsystemproteinAOS=NialliacirculansOX=1397GN=CEQ21_04190PE=3SV=1	REV__tr|A0A553SUP2|A0A553SUP2_NIACIUvrABCsystemproteinAOS=NialliacirculansOX=1397GN=CEQ21_04190PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	626.3080444335938	2	626.305538	1250.59652	-0.33284	-0.00020846	3.1414	0.0019675	2.8086	0.001759	626.3073615393313	94.131	1.5798	91.663	91.432	93.012	-2.4685					70	31	3	0	0	0	0.43993	1	8230	8230		58.23	3.5076	1	416920	+		19786	31103	16140	16164	21893	21893					-0.018751679251636233
INAFDCITLQN	11	Unmodified	_INAFDCITLQN_					0	0	0			REV__tr|A0A553SUP2|A0A553SUP2_NIACIUvrABCsystemproteinAOS=NialliacirculansOX=1397GN=CEQ21_04190PE=3SV=1	REV__tr|A0A553SUP2|A0A553SUP2_NIACIUvrABCsystemproteinAOS=NialliacirculansOX=1397GN=CEQ21_04190PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	626.305538	1250.59652	-0.51124	-0.0003202	3.5623	0.0022311	3.051	0.0019109	626.3076742752919	92.899	2.3518	91.731	91.235	93.586	-1.168	0.050037	0.00027619	NaN	58.23	84	45	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	309970	+		19787	31103	16140	16164							-0.018751679251636233
INAFDCITLQN	11	Unmodified	_INAFDCITLQN_					0	0	0			REV__tr|A0A553SUP2|A0A553SUP2_NIACIUvrABCsystemproteinAOS=NialliacirculansOX=1397GN=CEQ21_04190PE=3SV=1	REV__tr|A0A553SUP2|A0A553SUP2_NIACIUvrABCsystemproteinAOS=NialliacirculansOX=1397GN=CEQ21_04190PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	626.305538	1250.59652	-0.3971	-0.00024871	3.1315	0.0019613	2.7344	0.0017126	626.3074015128752	93.612	2.019	91.65	91.328	93.347	-1.9617	-0.031249	-0.00026345	NaN	58.23	88	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	510200	+		19788	31103	16140	16164							-0.018751679251636233
INAFDCITLQN	11	Unmodified	_INAFDCITLQN_					0	0	0			REV__tr|A0A553SUP2|A0A553SUP2_NIACIUvrABCsystemproteinAOS=NialliacirculansOX=1397GN=CEQ21_04190PE=3SV=1	REV__tr|A0A553SUP2|A0A553SUP2_NIACIUvrABCsystemproteinAOS=NialliacirculansOX=1397GN=CEQ21_04190PE=3SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	626.305538	1250.59652	-0.33284	-0.00020846	3.1414	0.0019675	2.8086	0.001759	626.3073615393313	94.131	1.5798	91.663	91.432	93.012	-2.4685	-0.018788	-0.00025104	NaN	58.23	70	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	416920	+		19789	31103	16140	16164							-0.018751679251636233
INAGDFFYL	9	Unmodified	_INAGDFFYL_					0	0	0			REV__tr|A0A553SFS6|A0A553SFS6_NIACIATP-dependenthelicase/nucleasesubunitAOS=NialliacirculansOX=1397GN=addAPE=3SV=1	REV__tr|A0A553SFS6|A0A553SFS6_NIACIATP-dependenthelicase/nucleasesubunitAOS=NialliacirculansOX=1397GN=addAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	530.2786865234375	2	530.260925	1058.5073	-0.4954	-0.00026269	-1.2445	-0.00065991	-1.7399	-0.00092261	530.7625556584264	95.043	0.95026	93.147	92.813	93.763	-1.8956					37	18	3	0	0	0	0.027462	1	6146	6146		29.15	0	1	33120	+		19790	29616	16141	16165	21894	21894					-0.019616348223962632
INAQAIFR	8	Unmodified	_INAQAIFR_					0	0	0			REV__tr|A0A7D6ZRF3|A0A7D6ZRF3_9CLOTBeta-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03595PE=3SV=1	REV__tr|A0A7D6ZRF3|A0A7D6ZRF3_9CLOTBeta-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03595PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	466.7707214355469	2	466.769252	931.52395	2.0325	0.00094872	-0.56774	-0.000265	1.4648	0.00068372	466.76926594166116	90.491	3.1615	90.491	90.143	93.305	0					192	76	6	0	0	0	0.47599	1	9748	9748		79.939	22.128	1	25081000	+		19791	32157	16142	16166	21895	21895					0.05544910854234786
INARRRILQP	10	Unmodified	_INARRRILQP_					0	0	0		ENST00000526955.1_1_11:125281302-125301285:+|nuORF;nc|ENSG00000165495|Q96KN3-2|PKNOX2;ENSG00000165495|ENST00000298282|PKNOX2;ENST00000607049.5_1_21:44448776-44450208:+|nuORF	ENST00000526955.1_1_11:125281302-125301285:+|nuORF	ENST00000526955.1_1_11:125281302-125301285:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	412.9275817871094	3	412.926434	1235.75747	-0.45561	-0.00018813	0.037048	1.5298E-05	-0.41856	-0.00017283	412.926517070453	55.311	2.1325	52.016	51.648	53.781	-3.2944					136	41	5	0	0	0	0.59317	1	3519	3519		42.864	4.1107	1	2139000			19792	6568	16143	16167	21896	21896					0.14902387293750508
INASKAKDIMM	11	Unmodified	_INASKAKDIMM_					0	0	0			REV__tr|A0A7D6VWP0|A0A7D6VWP0_9CLOTD-galactose/methyl-galactosidebindingperiplasmicproteinMglBOS=ClostridiumintestinaleOX=36845GN=HZF06_04900PE=3SV=1	REV__tr|A0A7D6VWP0|A0A7D6VWP0_9CLOTD-galactose/methyl-galactosidebindingperiplasmicproteinMglBOS=ClostridiumintestinaleOX=36845GN=HZF06_04900PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	611.3744506835938	2	611.320134	1220.62571	1.7391	0.0010631	-1.1975	-0.00073204	0.54159	0.00033109	611.8208040644394	148.9	0.38922	148.9	148.67	149.06	0					12	7	2	0	0	0	0.025297	1	17404	17404		29.551	5.0316	1	22646	+		19793	31753	16144	16168	21897	21897					0.024226530994610584
INATLTIAP	9	Unmodified	_INATLTIAP_					0	0	0			REV__nc|ENSG00000136051|Q2M389-2|WASHC4	REV__nc|ENSG00000136051|Q2M389-2|WASHC4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.30120849609375	2	457.271293	912.528032	-0.64299	-0.00029402	1.2968	0.00059297	0.65377	0.00029895	457.27165021438105	88.94	0.79144	86.337	85.933	86.725	-2.6027					22	15	2	0	0	0	0.027462	1	7573	7573		45.952	33.745	1	33273	+		19794	19354	16145	16169	21898	21898					0.06826955557289693
INAYTEAAAA	10	Unmodified	_INAYTEAAAA_					0	0	0			REV__nc|ENSG00000091129|Q92823-2|NRCAM	REV__nc|ENSG00000091129|Q92823-2|NRCAM	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.74420166015625	2	497.745639	993.476725	-1.7249	-0.00085854	1.4239	0.00070874	-0.30096	-0.0001498	497.74600821151574	126.98	1.2008	125.55	125.24	126.45	-1.4357					49	23	3	0	0	0	0.55359	1	12106	12106		47.657	3.2801	1	92115	+		19795	17242	16146	16170	21899	21899					-0.020274132074519002
INCRNNKKLL	10	Unmodified	_INCRNNKKLL_					0	0	0		nc|ENSG00000125743|P62316-2|SNRPD2;ENSG00000125743|ENST00000342669|SNRPD2	nc|ENSG00000125743|P62316-2|SNRPD2	nc|ENSG00000125743|P62316-2|SNRPD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	406.5799865722656	3	405.90453	1214.69176	0.22277	9.0422E-05	-3.7787	-0.0015338	-3.5559	-0.0014434	405.90289346004437	44.146	0.35227	44.146	43.952	44.305	0					12	7	2	0	0	0	0.026843	1	2977	2977		38.754	3.6016	1	204960			19796	3729	16147	16171	21900	21900					0.0930023005653311
INDETVQTI	9	Unmodified	_INDETVQTI_					0	0	0			REV__ENSG00000142621|ENST00000688493|FHAD1;REV__ENST00000459961.1_1_1:15653545-15655159:+|nuORF	REV__ENSG00000142621|ENST00000688493|FHAD1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.763916015625	2	516.764029	1031.5135	-0.71166	-0.00036776	1.2874	0.00066527	0.57572	0.00029751	516.7647230031616	35.962	0.68974	35.962	35.753	36.442	0					36	14	3	0	0	0	0.2422	1	1846	1846		69.628	3.1983	1	4351700	+		19797	19796;26072	16148	16172	21901	21901					-0.0009916138149037579
INDIAPLVIR	10	Unmodified	_INDIAPLVIR_					0	0	0			REV__ENST00000424720.2_12:132824120-132905933:-|nuORF	REV__ENST00000424720.2_12:132824120-132905933:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	562.3432006835938	2	562.345323	1122.67609	-1.142	-0.00064221	-2.621	-0.0014739	-3.7631	-0.0021161	562.3438081477608	141.84	4.7959	141.62	140.24	145.03	-0.22697					133	96	2	0	0	0	0.70152	1	14374	14374		30.318	4.8675	1	113870	+		19798	22323	16149	16173	21902	21902					0.11966266811100468
INDKKLDSV	9	Unmodified	_INDKKLDSV_					0	0	0			REV__tr|A0A7D6VVG6|A0A7D6VVG6_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05100PE=4SV=1	REV__tr|A0A7D6VVG6|A0A7D6VVG6_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05100PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.3114013671875	2	516.290214	1030.56587	0.65968	0.00034059	-3.491	-0.0018024	-2.8314	-0.0014618	516.2885774959718	35.634	0.24972	32.785	32.69	32.94	-2.849					5	4	2	0	0	0	0.027462	1	1153	1153		39.253	10.999	1	7932.1	+		19799	31717	16150	16174	21903	21903					0.051814217520814054
INDNGVLD	8	Unmodified	_INDNGVLD_					0	0	0			REV__tr|A0A553SJP1|A0A553SJP1_NIACIAlpha-1,4glucanphosphorylaseOS=NialliacirculansOX=1397GN=CEQ21_17280PE=3SV=1	REV__tr|A0A553SJP1|A0A553SJP1_NIACIAlpha-1,4glucanphosphorylaseOS=NialliacirculansOX=1397GN=CEQ21_17280PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	430.2106018066406	2	430.211432	858.408311	1.3602	0.0005852	-2.9687	-0.0012771	-1.6084	-0.00069195	430.210071815607	113.98	1.3755	112.54	112.2	113.57	-1.4461					58	26	3	0	0	0	0.67872	1	10566	10566		47.657	10.498	1	255360	+		19800	30024	16151	16175	21904	21904					-0.026556577872838716
INDPRPDAI	9	Unmodified	_INDPRPDAI_					0	0	0		tr|A0A7D6VYI2|A0A7D6VYI2_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16035PE=4SV=1	tr|A0A7D6VYI2|A0A7D6VYI2_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16035PE=4SV=1	tr|A0A7D6VYI2|A0A7D6VYI2_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16035PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.768310546875	2	505.766906	1009.51926	-0.5282	-0.00026715	0.031294	1.5827E-05	-0.49691	-0.00025132	505.7668696282041	58.666	1.545	55.274	54.802	56.347	-3.392					92	30	5	0	0	0	0.1804	2	3908	3861;3908		79.713	2.9384	1	1469000			19801	35332	16152	16176	21905;21906	21906					0.014879819208090339
INEAFIVIK	9	Unmodified	_INEAFIVIK_					0	0	0			REV__tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	REV__tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	523.811767578125	2	523.815867	1045.61718	-0.59076	-0.00030945	-3.2984	-0.0017277	-3.8891	-0.0020372	523.8140622984237	60.4	1.7337	57.629	57.032	58.766	-2.7702					76	29	4	0	0	0	0.27001	1	4441	4441		66.429	0	1	237300	+		19802	31958	16153	16177	21907	21907					0.09619790516785542
INEAIIKSVF	10	Unmodified	_INEAIIKSVF_					0	0	0			REV__nc|ENSG00000136827|O14656-2|TOR1A	REV__nc|ENSG00000136827|O14656-2|TOR1A	MULTI-MSMS	OvCa9_classI_Rep3	3	567.32958984375	2	567.331882	1132.64921	-3.474	-0.0019709	-0.21845	-0.00012393	-3.6925	-0.0020949	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.74374	1	12067	12067		25.574	0.12388	1	458690	+		19803	19408	16154	16178	21908	21908					0.0881915819995811
INEDPNNKL	9	Unmodified	_INEDPNNKL_					0	0	0		nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A	nc|ENSG00000130294|Q12756|KIF1A	nc|ENSG00000130294|Q12756|KIF1A	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.7706909179688	2	528.769645	1055.52474	-0.50689	-0.00026803	0.27045	0.00014301	-0.23643	-0.00012502	528.769711624685	64.482	1.6495	61.007	60.588	62.237	-3.4757					76	33	4	0	0	0	0.37135	1	4612	4612		54.776	0	1	1468800			19804	3976	16155	16179	21909	21909					-0.0008033928738768736
INEMVRELD	9	Oxidation (M)	_INEM(Oxidation (M))VRELD_		INEM(1)VRELD		INEM(90)VRELD	0	0	1		nc|ENSG00000134644|Q14671-2|PUM1;ENSG00000134644|ENST00000426105|PUM1	nc|ENSG00000134644|Q14671-2|PUM1	nc|ENSG00000134644|Q14671-2|PUM1	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.7760009765625	2	567.776613	1133.53867	0.90154	0.00051187	-0.61995	-0.00035199	0.28159	0.00015988	567.7761146108131	122.65	1.6329	121.28	121.01	122.64	-1.3666					99	32	4	0	0	0	0.12515	1	11581	11581		90.37	7.6193	1	480490			19805	4315	16156	16180	21910	21910		141			-0.022754298506015402
INENEISLD	9	Unmodified	_INENEISLD_					0	0	0			REV__tr|A0A553SUQ5|A0A553SUQ5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04765PE=4SV=1	REV__tr|A0A553SUQ5|A0A553SUQ5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04765PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.756591796875	2	523.753661	1045.49277	2.1816	0.0011426	-0.97591	-0.00051114	1.2057	0.00063148	523.7523696886368	86.727	0.45669	86.727	86.431	86.888	0					13	10	2	0	0	0	0.027425	1	9114	9114		60.118	14.146	1	152270	+		19806	31109	16157	16181	21911	21911					-0.02815751761181673
INENKQKLV	9	Unmodified	_INENKQKLV_					0	0	0		tr|A0A7D6VYU4|A0A7D6VYU4_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17860PE=4SV=1	tr|A0A7D6VYU4|A0A7D6VYU4_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17860PE=4SV=1	tr|A0A7D6VYU4|A0A7D6VYU4_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17860PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.3465576171875	2	543.319306	1084.62406	-0.96943	-0.00052671	0.40874	0.00022207	-0.56069	-0.00030463	543.3193417680027	65.427	0.48419	61.942	61.694	62.179	-3.4854					22	9	3	0	0	0	0.027185	1	4715	4715		93.195	8.0346	1	241230			19807	35339	16158	16182	21912	21912					0.08513103397376653
INEPLVRFY	9	Unmodified	_INEPLVRFY_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa99_classI_Rep5	1	575.8167724609375	2	575.816399	1149.61824	1.6009	0.00092181	1.0462	0.00060244	2.6471	0.0015242	575.8170124478966	112.58	1.2482	112.58	112.25	113.5	0					85	28	5	0	0	0	0.16562	1	12803	12803		82.241	5.4664	1	4222100	+		19808	28942	16159	16183	21913	21913					0.04942004885697315
INERKLSKL	9	Unmodified	_INERKLSKL_					0	0	0		tr|A0A7D6VM03|A0A7D6VM03_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11965PE=4SV=1	tr|A0A7D6VM03|A0A7D6VM03_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11965PE=4SV=1	tr|A0A7D6VM03|A0A7D6VM03_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11965PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	550.8405151367188	2	550.842948	1099.67134	-0.90408	-0.00049801	0.57098	0.00031452	-0.3331	-0.00018349	550.8431760190194	35.028	0.7967	35.028	34.864	35.661	0					31	16	3	0	0	0	0.47363	1	1739	1739		45.022	4.964	1	599440			19809	34641	16160	16184	21914	21914					0.1254938266836234
INEVHGLIVI	10	Unmodified	_INEVHGLIVI_					0	0	0			REV__ENSG00000164935|ENST00000297581|DCSTAMP	REV__ENSG00000164935|ENST00000297581|DCSTAMP	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8294067382812	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.73378	1	14259	14259		26.693	2.1737	1	245610	+		19810	21040	16161	16185	21915	21915					0.10094577919812764
INFFTQLL	8	Unmodified	_INFFTQLL_					0	0	0			REV__nc|ENSG00000196954|P49662-4|CASP4	REV__nc|ENSG00000196954|P49662-4|CASP4	MULTI-MSMS	OvCa9_classI_Rep2	2	498.2815856933594	2	498.28166	994.548768	0.43376	0.00021614	-0.53163	-0.0002649	-0.097869	-4.8766E-05	498.28127650436284	131.63	1.4224	131.41	131	132.42	-0.22697					82	28	4	0	0	0	0.66992	1	12990	12990		49.442	3.4896	1	388250	+		19811	22879	16162	16186	21916	21916					0.051275459369549026
INFLKETLD	9	Unmodified	_INFLKETLD_					0	0	0		ENST00000424478.5_1_14:45565874-45584113:+|nuORF;ENSG00000185246|ENST00000355765|PRPF39;ENST00000554429.5_1_14:45565874-45579180:+|nuORF	ENST00000424478.5_1_14:45565874-45584113:+|nuORF	ENST00000424478.5_1_14:45565874-45584113:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.3204956054688	2	546.800414	1091.58628	-0.46838	-0.00025611	-0.040557	-2.2177E-05	-0.50894	-0.00027829	546.8004419273713	102.22	0.42128	100.02	99.78	100.2	-2.1994					12	7	2	0	0	0	0.027462	1	9210	9210		19.104	0	1	42241			19812	8237	16163	16187	21917	21917					0.04414592411899321
INFQKAGPD	9	Unmodified	_INFQKAGPD_					0	0	0		ENST00000504674.1_1_5:39720798-39721572:-|nuORF	ENST00000504674.1_1_5:39720798-39721572:-|nuORF	ENST00000504674.1_1_5:39720798-39721572:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.7907409667969	2	495.256174	988.497795	2.0908	0.0010355	-2.2573	-0.0011179	-0.16646	-8.2438E-05	495.25536054994194	93.947	0.25043	93.947	93.757	94.007	0					9	5	2	0	0	0	0.027462	1	10213	10213		49.442	21.36	1	184260			19813	12879	16164	16188	21918	21918					0.0030859689210274155
INFRLRQYMDK	11	Unmodified	_INFRLRQYMDK_					0	0	0		ENSG00000131242|ENST00000621161|RAB11FIP4;ENST00000578148.1_1_17:29858134-29858747:+|nuORF;nc|ENSG00000131242|Q86YS3-2|RAB11FIP4;NF1-RAB11FIP4|1|fusion;RNF135-RAB11FIP4|1|fusion;NF1-RAB11FIP4|4|fusion;NF1-RAB11FIP4|2|fusion;NF1-RAB11FIP4|3|fusion	ENSG00000131242|ENST00000621161|RAB11FIP4;NF1-RAB11FIP4|2|fusion	NF1-RAB11FIP4|2|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.77581787109375	3	495.266127	1482.77655	-0.57237	-0.00028348	1.9264	0.00095409	1.3541	0.00067062	495.26703830490084	51.266	1.0047	48.092	47.62	48.624	-3.1734					34	19	3	0	0	0	0.026145	1	2973	2973		12.957	0	1	78073			19814	4051;15426	16165	16189	21919	21919					0.054475558024705606
INFWPVDSA	9	Unmodified	_INFWPVDSA_					0	0	0		ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-14|DMD;nc|ENSG00000198947|P11532-17|DMD;nc|ENSG00000198947|P11532-2|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-12|DMD;nc|ENSG00000198947|P11532-6|DMD;nc|ENSG00000198947|P11532-7|DMD	ENSG00000198947|ENST00000357033|DMD	ENSG00000198947|ENST00000357033|DMD	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.78125	2	524.758549	1047.50255	-2.6499	-0.0013906	-1.0101	-0.00053007	-3.6601	-0.0019206	524.757522324751	126.59	0.48856	125.17	124.88	125.36	-1.4143					16	9	2	0	0	0	0.027462	1	12021	12021		29.15	12.676	1	18090			19815	8914	16166	16190	21920	21920					-0.019305189651277033
INFWPVDSA	9	Unmodified	_INFWPVDSA_					0	0	0		ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-14|DMD;nc|ENSG00000198947|P11532-17|DMD;nc|ENSG00000198947|P11532-2|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-12|DMD;nc|ENSG00000198947|P11532-6|DMD;nc|ENSG00000198947|P11532-7|DMD	ENSG00000198947|ENST00000357033|DMD	ENSG00000198947|ENST00000357033|DMD	MULTI-MATCH	OvCa9_classI_Rep2	2		2	524.758549	1047.50255	0.59271	0.00031103	-2.3671	-0.0012421	-1.7744	-0.00093112	524.7566580509958	125.52	0.54463	125.28	124.86	125.41	-0.2359	0.06658	-0.00071579	NaN	21.96	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16891			19816	8914	16166	16190							-0.019305189651277033
INFWPVDSA	9	Unmodified	_INFWPVDSA_					0	0	0		ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-14|DMD;nc|ENSG00000198947|P11532-17|DMD;nc|ENSG00000198947|P11532-2|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-12|DMD;nc|ENSG00000198947|P11532-6|DMD;nc|ENSG00000198947|P11532-7|DMD	ENSG00000198947|ENST00000357033|DMD	ENSG00000198947|ENST00000357033|DMD	MULTI-MATCH	OvCa9_classI_Rep3	3		2	524.758549	1047.50255	0.96378	0.00050575	-1.152	-0.00060451	-0.1882	-9.8757E-05	524.7575593336354	126.26	0.57707	125.19	125.07	125.65	-1.0715	-0.023946	0.0005595	NaN	21.96	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16805			19817	8914	16166	16190							-0.019305189651277033
INFYRELT	8	Unmodified	_INFYRELT_					0	0	0		tr|A0A553SMC9|A0A553SMC9_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_22365PE=4SV=1	tr|A0A553SMC9|A0A553SMC9_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_22365PE=4SV=1	tr|A0A553SMC9|A0A553SMC9_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_22365PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	527.8698120117188	2	528.279649	1054.54475	-1.3865	-0.00073247	4.1202	0.0021766	2.7337	0.0014441	528.2819438353545	116.73	0.59347	116.6	116.32	116.91	-0.12868					19	11	2	0	0	0	0.028476	1	11155	11155		27.882	7.4004	1	16924			19818	33822	16167	16191	21921	21921					0.0196545644323578
INGAGKPLLK	10	Unmodified	_INGAGKPLLK_					0	0	0			REV__tr|A0A553SFL3|A0A553SFL3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09110PE=3SV=1	REV__tr|A0A553SFL3|A0A553SFL3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09110PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.82098388671875	2	505.821484	1009.62842	0.017413	8.8078E-06	0.23186	0.00011728	0.24928	0.00012609	505.8211344677053	111.76	1.5176	110.25	109.58	111.1	-1.5111					66	28	4	0	0	0	0.59703	1	10308	10308		42.396	3.59	1	155480	+		19819	29590	16168	16192	21922	21922					0.12398612610934379
INGAGMFL	8	Unmodified	_INGAGMFL_					0	0	0		tr|A0A7D6ZZY6|A0A7D6ZZY6_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_08145PE=4SV=1	tr|A0A7D6ZZY6|A0A7D6ZZY6_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_08145PE=4SV=1	tr|A0A7D6ZZY6|A0A7D6ZZY6_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_08145PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	411.7152099609375	2	411.712556	821.41056	1.1912	0.00049042	1.9074	0.00078532	3.0986	0.0012757	411.7137330187845	57.711	1.2157	57.711	57.48	58.696	0					69	28	4	0	0	0	0.49583	1	4860	4860		77.944	12.046	1	5962200			19820	35979	16169	16193	21923	21923					-0.00728900583169434
INGGLQPAF	9	Unmodified	_INGGLQPAF_					0	0	0		nc|ENSG00000085563|P08183-2|ABCB1;ENSG00000085563|ENST00000622132|ABCB1	nc|ENSG00000085563|P08183-2|ABCB1	nc|ENSG00000085563|P08183-2|ABCB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.7779541015625	2	458.747985	915.481417	-0.556	-0.00025506	0.71969	0.00033015	0.16369	7.5091E-05	458.74820884479936	66.362	0.39588	66.362	66.136	66.531	0					16	9	2	0	0	0	0.027462	1	6138	6138		25.45	0	1	594100			19821	1734	16170	16194	21924	21924					0.020295157259852203
INGLAKDWL	9	Unmodified	_INGLAKDWL_					0	0	0			REV__tr|A0A553SHL9|A0A553SHL9_NIACIChromosomalreplicationinitiatorproteinDnaAOS=NialliacirculansOX=1397GN=dnaAPE=3SV=1	REV__tr|A0A553SHL9|A0A553SHL9_NIACIChromosomalreplicationinitiatorproteinDnaAOS=NialliacirculansOX=1397GN=dnaAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.2894287109375	2	515.290017	1028.56548	2.108	0.0010862	0.70004	0.00036072	2.808	0.001447	515.2901134587047	98.767	0.53001	98.767	98.506	99.036	0					29	12	3	0	0	0	0.2077	1	10897	10897		75.043	7.5496	1	2177600	+		19822	29816	16171	16195	21925	21925					0.05234046822897653
INGLHLVSAI	10	Unmodified	_INGLHLVSAI_					0	0	0			REV__nc|ENSG00000174527|Q8N1T3-3|MYO1H	REV__nc|ENSG00000174527|Q8N1T3-3|MYO1H	MULTI-MSMS	OvCa9_classI_Rep3	3	518.8120727539062	2	518.811116	1035.60768	-0.049483	-2.5672E-05	-1.1441	-0.00059357	-1.1936	-0.00061924	518.8105741700431	88.52	3.827	86.389	85.803	89.63	-2.1309					168	75	5	0	0	0	0.37436	1	5429	5429		71.877	3.0906	1	8533700	+		19823	21840	16172	16196	21926	21926					0.09130022231283874
INGLIMGIL	9	Unmodified	_INGLIMGIL_					0	0	0			REV__tr|A0A553SGS7|A0A553SGS7_NIACI2-keto-3-deoxygluconatepermeaseOS=NialliacirculansOX=1397GN=CEQ21_11385PE=3SV=1	REV__tr|A0A553SGS7|A0A553SGS7_NIACI2-keto-3-deoxygluconatepermeaseOS=NialliacirculansOX=1397GN=CEQ21_11385PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.2718811035156	2	472.285889	942.557224	-1.0725	-0.00050652	3.8211	0.0018047	2.7487	0.0012982	472.28992089419063	107.62	0.48667	105.74	105.49	105.97	-1.8785					14	9	2	0	0	0	0.027417	1	9816	9816		76.847	10.417	1	20592	+		19824	29733	16173	16197	21927	21927					0.0836477658193644
INGLIMGIL	9	Unmodified	_INGLIMGIL_					0	0	0			REV__tr|A0A553SGS7|A0A553SGS7_NIACI2-keto-3-deoxygluconatepermeaseOS=NialliacirculansOX=1397GN=CEQ21_11385PE=3SV=1	REV__tr|A0A553SGS7|A0A553SGS7_NIACI2-keto-3-deoxygluconatepermeaseOS=NialliacirculansOX=1397GN=CEQ21_11385PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	472.285889	942.557224	-0.30359	-0.00014338	3.4563	0.0016324	3.1527	0.001489	472.2894668666691	106.06	0.89957	105.63	105.15	106.05	-0.43642	-0.055583	-0.00016696	NaN	76.847	31	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19438	+		19825	29733	16173	16197							0.0836477658193644
INGPIPLNLAK	11	Unmodified	_INGPIPLNLAK_					0	0	0			REV__tr|A0A7D6ZMT2|A0A7D6ZMT2_9CLOTCidA/LrgAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13375PE=4SV=1	REV__tr|A0A7D6ZMT2|A0A7D6ZMT2_9CLOTCidA/LrgAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13375PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.3505859375	2	575.353148	1148.69174	-5.3555	-0.0030813	1.6434	0.00094551	-3.7121	-0.0021358	575.3541227015148	157.34	0.65527	157.11	156.88	157.53	-0.22696					24	20	2	0	0	0	0.72473	1	16008	16008		19.104	2.3861	1	25583	+		19826	32111	16174	16198	21928	21928					0.1233455332817357
INGRWKIS	8	Unmodified	_INGRWKIS_					0	0	0			REV__ENSG00000163867|ENST00000357182|ZMYM6	REV__ENSG00000163867|ENST00000357182|ZMYM6	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.7763366699219	2	487.282526	972.550499	2.8814	0.001404	-2.485	-0.0012109	0.39641	0.00019316	487.28113933815683	89.682	1.0247	89.682	89.119	90.143	0					26	24	2	0	0	0	0.028476	1	9559	9559		42.396	0	1	473890	+		19827	20901	16175	16199	21929	21929					0.06312599745569969
INGSPSTPPE	10	Unmodified	_INGSPSTPPE_					0	0	0			REV__ENSG00000111727|ENST00000229330|HCFC2	REV__ENSG00000111727|ENST00000229330|HCFC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.2878723144531	2	499.743096	997.47164	-0.67913	-0.00033939	-0.019975	-9.9825E-06	-0.6991	-0.00034937	499.74304548294606	76.746	1.0078	73.808	73.55	74.558	-2.9389					32	20	2	0	0	0	0.026994	1	6159	6159		40.778	9.2484	1	65286	+		19828	18053	16176	16200	21930	21930					-0.02719717070056049
INGVNVDADI	10	Unmodified	_INGVNVDADI_					0	0	0			REV__ENSG00000203837|ENST00000369230|PNLIPRP3	REV__ENSG00000203837|ENST00000369230|PNLIPRP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.2894287109375	2	515.264196	1028.51384	2.308	0.0011892	0.23138	0.00011922	2.5394	0.0013084	515.2639444232475	98.944	0.98677	98.944	98.29	99.276	0					37	23	2	0	0	0	0.026548	1	10897	10897		72.879	10.772	1	1057700	+		19829	23114	16177	16201	21931	21931					0.0007225833833217621
INGVPLEL	8	Unmodified	_INGVPLEL_					0	0	0			REV__tr|A0A553SFN0|A0A553SFN0_NIACIAcetylornithineaminotransferaseOS=NialliacirculansOX=1397GN=argDPE=3SV=1	REV__tr|A0A553SFN0|A0A553SFN0_NIACIAcetylornithineaminotransferaseOS=NialliacirculansOX=1397GN=argDPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	427.75323486328125	2	427.752736	853.490919	-0.093024	-3.9791E-05	2.112	0.00090343	2.019	0.00086364	427.7533628814763	42.69	1.3275	42.69	42.496	43.823	0					67	30	3	0	0	0	0.7224	1	2766	2766		38.806	5.2906	1	538440	+		19830	29595	16178	16202	21932	21932					0.058312840115036124
INHFFCDLP	9	Unmodified	_INHFFCDLP_					0	0	0		OR5I1|p.E209Cfs*23|1|0.17|ENSG00000167825|chr11:55935777-55935778|-/AATCACAT|frameshift_variant;OR5I1|p.E209Rfs*65|1|0.17|ENSG00000167825|chr11:55935776-55935777|-/T|frameshift_variant;ENSG00000167825|ENST00000301532|OR5I1;ENSG00000279395|ENST00000625203|OR5L1;ENSG00000205030|ENST00000378397|OR5L2;ENSG00000172324|ENST00000302040|OR5A2;ENSG00000172320|ENST00000641045|OR5A1	OR5I1|p.E209Cfs*23|1|0.17|ENSG00000167825|chr11:55935777-55935778|-/AATCACAT|frameshift_variant;ENSG00000172320|ENST00000641045|OR5A1	ENSG00000172320|ENST00000641045|OR5A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.2726440429688	2	553.260402	1104.50625	1.3933	0.00077088	2.6977	0.0014925	4.091	0.0022634	553.261466994099	138.56	0.43143	138.56	138.31	138.74	0					18	8	3	0	0	0	0.027426	1	16163	16163		35.618	0	1	115030			19831	6841;7289	16179	16203	21933	21933					-0.041821724629471646
INHIGVLPI	9	Unmodified	_INHIGVLPI_					0	0	0		tr|A0A553SI68|A0A553SI68_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14285PE=4SV=1	tr|A0A553SI68|A0A553SI68_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14285PE=4SV=1	tr|A0A553SI68|A0A553SI68_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14285PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	488.7835388183594	2	488.302927	974.591301	0.10891	5.3182E-05	-1.2678	-0.00061907	-1.1589	-0.00056589	488.30227689924453	64.039	0.342	60.564	60.442	60.784	-3.475					11	6	2	0	0	0	0.027433	1	4533	4533		38.806	10.552	1	38509			19832	33351	16180	16204	21934	21934					0.10298941065184408
INHIGVLPI	9	Unmodified	_INHIGVLPI_					0	0	0		tr|A0A553SI68|A0A553SI68_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14285PE=4SV=1	tr|A0A553SI68|A0A553SI68_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14285PE=4SV=1	tr|A0A553SI68|A0A553SI68_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14285PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	488.302927	974.591301	-1.4584	-0.00071213	1.8882	0.000922	0.42979	0.00020987	488.3038332106764	63.287	0.52798	60.543	60.161	60.689	-2.7444	-0.010334	0.00032756	NaN	30.504	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20083			19833	33351	16180	16204							0.10298941065184408
INHYVVVF	8	Unmodified	_INHYVVVF_					0	0	0		nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-5|ARAP1;ENST00000546293.1_1_11:72406726-72408040:-|nuORF;ENST00000465814.5_1_11:72396711-72407721:-|nuORF	nc|ENSG00000186635|Q96P48-3|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	494.7821044921875	2	495.774003	989.533452	-0.85609	-0.00042443	-4.3297	-0.0021465	-5.1858	-0.002571	495.7719614277727	60.912	0.94679	58.142	57.819	58.766	-2.7702					25	17	2	0	0	0	0.028476	1	4573	4573		20.482	3.1169	1	37265			19834	8350	16181	16205	21935	21935					0.038266791397632005
INIECFQGSFG	11	Unmodified	_INIECFQGSFG_					0	0	0			REV__ENSG00000188107|ENST00000503581|EYS	REV__ENSG00000188107|ENST00000503581|EYS	MSMS	OvCa99_classI_Rep5	1	607.78369140625	2	607.779156	1213.54376	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.62	1	149.62	149.12	150.12	0								0	0	0	0.19469	1	17514	17514		29.551	6.0281	1		+		19835	22690	16182	16206	21936	21936					-0.05447125987984691
INIIHTKVT	9	Unmodified	_INIIHTKVT_					0	0	0			REV__tr|A0A7D7A155|A0A7D7A155_9CLOTHTHluxR-typedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14280PE=4SV=1	REV__tr|A0A7D7A155|A0A7D7A155_9CLOTHTHluxR-typedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14280PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.3014526367188	2	519.818941	1037.62333	1.3239	0.00068821	3.221	0.0016744	4.545	0.0023626	519.8205080940354	128.08	0.32527	128.08	127.9	128.23	0					8	6	2	0	0	0	0.027441	1	14814	14814		49.442	0	1	31595	+		19836	32473	16183	16207	21937	21937					0.10602308748320866
INIKSIPK	8	Unmodified	_INIKSIPK_					0	0	0		ENSG00000123545|ENST00000316149|NDUFAF4	ENSG00000123545|ENST00000316149|NDUFAF4	ENSG00000123545|ENST00000316149|NDUFAF4	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.9246826171875	2	456.797478	911.580402	0.20884	9.5398E-05	-3.4946	-0.0015963	-3.2857	-0.0015009	456.79577067536326	31.782	0.29811	31.782	31.658	31.956	0					7	5	2	0	0	0	0.028476	1	1334	1334		17.365	0	1	36725			19837	3601	16184	16208	21938	21938					0.1210753869089558
INIKYDLN	8	Unmodified	_INIKYDLN_					0	0	0			REV__tr|A0A7D6VQY7|A0A7D6VQY7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03355PE=4SV=1	REV__tr|A0A7D6VQY7|A0A7D6VQY7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03355PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.7647399902344	2	496.7742	991.533846	2.9009	0.0014411	0.2635	0.0001309	3.1644	0.001572	496.77362186680773	87.965	0.58796	87.965	87.754	88.342	0					23	13	3	0	0	0	0.028476	1	9382	9382		42.396	3.59	1	928770	+		19838	31371	16185	16209	21939	21939					0.03774054068935584
INILFAEAHI	10	Unmodified	_INILFAEAHI_					0	0	0		ENSG00000128591|ENST00000325888|FLNC;nc|ENSG00000128591|Q14315-2|FLNC;FLNC|p.I2110Tfs*16|1|0.33|ENSG00000128591|chr7:128853588-128853591|ATCA/-|frameshift_variant	ENSG00000128591|ENST00000325888|FLNC	ENSG00000128591|ENST00000325888|FLNC	MULTI-MSMS	OvCa9_classI_Rep3	3	570.8231811523438	2	570.824224	1139.63389	-1.4032	-0.00080099	-3.2125	-0.0018338	-4.6157	-0.0026347	570.8225609125153	84.075	2.0116	81.814	81.434	83.445	-2.261					125	41	4	0	0	0	0.37436	2	4854	4854;4867		71.877	17.101	1	2084000			19839	3890	16186	16210	21940;21941	21940					0.06966291402750358
ININQDYSN	9	Unmodified	_ININQDYSN_					0	0	0			REV__tr|A0A553SRT2|A0A553SRT2_NIACIStageIIsporulationproteinPOS=NialliacirculansOX=1397GN=CEQ21_01650PE=4SV=1	REV__tr|A0A553SRT2|A0A553SRT2_NIACIStageIIsporulationproteinPOS=NialliacirculansOX=1397GN=CEQ21_01650PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.7650146484375	2	540.751453	1079.48835	-0.67525	-0.00036514	-3.5272	-0.0019073	-4.2024	-0.0022725	540.7494125126175	78.813	0.14017	76.061	75.991	76.132	-2.7514					4	2	2	0	0	0	0.027462	1	6370	6370		37.159	12.64	1	8892	+		19840	30763	16187	16211	21942	21942					-0.04821216184109289
INIRTLKN	8	Unmodified	_INIRTLKN_					0	0	0			REV__ENSG00000088386|ENST00000376503|SLC15A1	REV__ENSG00000088386|ENST00000376503|SLC15A1	MULTI-MSMS	OvCa9_classI_Rep2	2	486.30474853515625	2	486.303458	970.592364	0.60247	0.00029298	2.7724	0.0013482	3.3749	0.0016412	486.3047947264386	124.97	2.7662	124.74	124.37	127.13	-0.2359					156	55	5	0	0	0	0.67745	1	12233	12233		47.916	3.3845	1	3410600	+		19841	17177	16188	16212	21943	21943					0.10589155434081476
INISPTKKI	9	Unmodified	_INISPTKKI_					0	0	0		tr|A0A553SRP3|A0A553SRP3_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_01510PE=4SV=1	tr|A0A553SRP3|A0A553SRP3_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_01510PE=4SV=1	tr|A0A553SRP3|A0A553SRP3_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_01510PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	507.3225402832031	2	507.321317	1012.62808	-0.39721	-0.00020151	-0.058387	-2.9621E-05	-0.4556	-0.00023114	507.32115390446756	48.523	0.78303	48.523	48.292	49.075	0					45	17	4	0	0	0	0.049969	2	3583	3560;3583		118.74	17.142	1	2298300			19842	34284	16189	16213	21944;21945	21945					0.12227192891100458
INITGEDRSQ	10	Unmodified	_INITGEDRSQ_					0	0	0		ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.7806396484375	2	566.783284	1131.55202	-0.626	-0.00035481	-2.127	-0.0012056	-2.753	-0.0015604	566.7818721264231	127.12	1.1018	125.68	125.34	126.45	-1.4357					66	21	5	0	0	0	0.59317	1	12144	12144		42.864	3.6114	1	227200			19843	7735	16190	16214	21946	21946					-0.008498557469920343
INITQLLNDI	10	Unmodified	_INITQLLNDI_					0	0	0			REV__tr|A0A7D6ZPH2|A0A7D6ZPH2_9CLOTNeutral/alkalinenon-lysosomalceramidaseN-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20325PE=4SV=1	REV__tr|A0A7D6ZPH2|A0A7D6ZPH2_9CLOTNeutral/alkalinenon-lysosomalceramidaseN-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20325PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	578.8357543945312	2	578.832246	1155.64994	2.286	0.0013232	-0.19218	-0.00011124	2.0938	0.001212	578.8320133592459	97.214	0.59996	97.214	96.966	97.566	0					29	13	3	0	0	0	0.30325	1	10668	10668		80.455	9.6384	1	1497600	+		19844	32136	16191	16215	21947	21947					0.07833952849023262
INITQLLNDI	10	Unmodified	_INITQLLNDI_					0	0	0			REV__tr|A0A7D6ZPH2|A0A7D6ZPH2_9CLOTNeutral/alkalinenon-lysosomalceramidaseN-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20325PE=4SV=1	REV__tr|A0A7D6ZPH2|A0A7D6ZPH2_9CLOTNeutral/alkalinenon-lysosomalceramidaseN-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20325PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	578.832246	1155.64994	2.286	0.0013232	-0.19218	-0.00011124	2.0938	0.001212	578.8320133592459	97.214	0.59996	97.214	96.966	97.566	0	0	0	NaN	80.455	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1497600	+		19845	32136	16191	16215							0.07833952849023262
INIVLRAIE	9	Unmodified	_INIVLRAIE_					0	0	0		tr|A0A553SGS6|A0A553SGS6_NIACIChaperoninGroELOS=NialliacirculansOX=1397GN=groLPE=3SV=1	tr|A0A553SGS6|A0A553SGS6_NIACIChaperoninGroELOS=NialliacirculansOX=1397GN=groLPE=3SV=1	tr|A0A553SGS6|A0A553SGS6_NIACIChaperoninGroELOS=NialliacirculansOX=1397GN=groLPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.2713623046875	2	520.826766	1039.63898	-0.61164	-0.00031856	-0.4965	-0.00025859	-1.1081	-0.00057715	520.8267782571803	105.88	1.3055	103.86	103.1	104.41	-2.0161					37	25	3	0	0	0	0.027447	1	9612	9612		47.657	19.775	1	29747			19846	33189	16192	16216	21948	21948					0.12074595265380594
INIVLRAIE	9	Unmodified	_INIVLRAIE_					0	0	0		tr|A0A553SGS6|A0A553SGS6_NIACIChaperoninGroELOS=NialliacirculansOX=1397GN=groLPE=3SV=1	tr|A0A553SGS6|A0A553SGS6_NIACIChaperoninGroELOS=NialliacirculansOX=1397GN=groLPE=3SV=1	tr|A0A553SGS6|A0A553SGS6_NIACIChaperoninGroELOS=NialliacirculansOX=1397GN=groLPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	520.826766	1039.63898	-0.35887	-0.00018691	-1.0286	-0.00053572	-1.3875	-0.00072263	520.8263924606432	104.37	0.89202	103.8	103.18	104.07	-0.57639	-0.026789	4.0751E-05	NaN	47.657	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30475			19847	33189	16192	16216							0.12074595265380594
INIVLRAIE	9	Unmodified	_INIVLRAIE_					0	0	0		tr|A0A553SGS6|A0A553SGS6_NIACIChaperoninGroELOS=NialliacirculansOX=1397GN=groLPE=3SV=1	tr|A0A553SGS6|A0A553SGS6_NIACIChaperoninGroELOS=NialliacirculansOX=1397GN=groLPE=3SV=1	tr|A0A553SGS6|A0A553SGS6_NIACIChaperoninGroELOS=NialliacirculansOX=1397GN=groLPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	520.826766	1039.63898	0.50754	0.00026434	-1.4424	-0.00075125	-0.93488	-0.00048691	520.8262203448511	105.16	0.9365	103.81	103.52	104.46	-1.3482	-0.014523	-0.00039032	NaN	47.657	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38828			19848	33189	16192	16216							0.12074595265380594
INIVPRSRFI	10	Unmodified	_INIVPRSRFI_					0	0	0			REV__nc|ENSG00000091409|P23229-7|ITGA6	REV__nc|ENSG00000091409|P23229-7|ITGA6	MULTI-MSMS	OvCa9_classI_Rep3	3	405.5836486816406	3	405.583785	1213.72953	1.6628	0.00067442	-0.73825	-0.00029942	0.92458	0.00037499	405.5831216090262	68.754	1.6998	65.94	65.511	67.211	-2.8144					78	33	4	0	0	0	0.65849	1	3020	3020		35.152	2.4015	1	296870	+		19849	17248	16193	16217	21949	21949					0.13121064313645547
INKFNIANL	9	Unmodified	_INKFNIANL_					0	0	0		tr|A0A7D6ZGB9|A0A7D6ZGB9_9CLOTPocRligand-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17685PE=4SV=1	tr|A0A7D6ZGB9|A0A7D6ZGB9_9CLOTPocRligand-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17685PE=4SV=1	tr|A0A7D6ZGB9|A0A7D6ZGB9_9CLOTPocRligand-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17685PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.763427734375	2	523.803291	1045.59203	-3.2018	-0.0016771	1.4398	0.00075419	-1.7619	-0.00092291	523.8039087583882	104.01	0.55152	104.01	103.77	104.32	0					27	12	3	0	0	0	0.027448	1	11677	11677		44.117	0	1	570090			19850	35539	16194	16218	21950	21950					0.07105735714230832
INKFVKLAP	9	Unmodified	_INKFVKLAP_					0	0	0			REV__ENSG00000119203|ENST00000238112|CPSF3	REV__ENSG00000119203|ENST00000238112|CPSF3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.3114013671875	2	515.326402	1028.63825	0.65942	0.00033982	2.77	0.0014274	3.4294	0.0017673	515.3291471434136	35.25	0.2509	32.401	32.24	32.491	-2.849					6	4	2	0	0	0	0.027462	1	1117	1117		40.573	1.7665	1	15226	+		19851	18429	16195	16219	21951	21951					0.12507800616344866
INKKLAPI	8	Unmodified	_INKKLAPI_					0	0	0			REV__nc|ENSG00000075790|Q9UHQ4-2|BCAP29	REV__nc|ENSG00000075790|Q9UHQ4-2|BCAP29	MULTI-MSMS	OvCa9_classI_Rep2	2	448.7997741699219	2	448.80002	895.585488	1.1656	0.00052313	-1.2994	-0.00058316	-0.13374	-6.0023E-05	448.7993403222566	118.17	1.7331	118.03	117.69	119.42	-0.14755					87	34	4	0	0	0	0.61758	1	11349	11349		60.294	2.4827	1	562320	+		19852	28734	16196	16220	21952	21952					0.1335184255351578
INKLIISSM	9	Unmodified	_INKLIISSM_					0	0	0		tr|A0A7D6W2U8|A0A7D6W2U8_9CLOTDUF1002domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07465PE=4SV=1	tr|A0A7D6W2U8|A0A7D6W2U8_9CLOTDUF1002domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07465PE=4SV=1	tr|A0A7D6W2U8|A0A7D6W2U8_9CLOTDUF1002domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07465PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8033752441406	2	509.801903	1017.58925	-0.41042	-0.00020923	4.0745	0.0020772	3.6641	0.001868	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.55588	1	13629	13629		37.159	0	1	150140			19853	35439	16197	16221	21953	21953					0.08116144265079583
INKLRFVK	8	Unmodified	_INKLRFVK_					0	0	0			REV__ENSG00000100652|ENST00000216540|SLC10A1	REV__ENSG00000100652|ENST00000216540|SLC10A1	MULTI-MSMS	OvCa99_classI_Rep5	1	509.3311767578125	2	509.332019	1016.64948	0.4021	0.0002048	-0.45518	-0.00023184	-0.053075	-2.7033E-05	509.3315933652325	45.335	0.82135	45.335	45.068	45.89	0					37	18	3	0	0	0	0.64026	1	3126	3126		55.504	7.5886	1	1003200	+		19854	17442	16198	16222	21954	21954					0.141826227104616
INKQLTNTL	9	Unmodified	_INKQLTNTL_					0	0	0		chr8:99854058-99878140|103|11.75|0.06|7.73|-|2|None,COX6C|1	chr8:99854058-99878140|103|11.75|0.06|7.73|-|2|None,COX6C|1	chr8:99854058-99878140|103|11.75|0.06|7.73|-|2|None,COX6C|1	MULTI-MSMS	OvCa99_classI_Rep5	1	522.8046875	2	522.806031	1043.59751	1.5694	0.00082051	1.0958	0.00057288	2.6652	0.0013934	522.8065504400671	91.996	0.63406	91.996	91.582	92.216	0					31	14	3	0	0	0	0.44568	1	9930	9930		47.657	0.8909	1	1596500			19855	550	16199	16223	21955	21955					0.07745414506052839
INKQRYLY	8	Unmodified	_INKQRYLY_					0	0	0			REV__tr|A0A553SFV6|A0A553SFV6_NIACICoproporphyrinogenIIIoxidaseOS=NialliacirculansOX=1397GN=CEQ21_09620PE=4SV=1	REV__tr|A0A553SFV6|A0A553SFV6_NIACICoproporphyrinogenIIIoxidaseOS=NialliacirculansOX=1397GN=CEQ21_09620PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.3241577148438	2	549.308741	1096.60293	-0.10091	-5.543E-05	-3.7633	-0.0020672	-3.8642	-0.0021226	549.306506792918	31.482	0.39624	31.482	31.311	31.708	0					18	7	4	0	0	0	0.028476	1	1282	1282		40.573	0	1	120770	+		19856	29627	16200	16224	21956	21956					0.058491380885243416
INKSKKPEN	9	Unmodified	_INKSKKPEN_					0	0	0			REV__tr|A0A7D6ZHS9|A0A7D6ZHS9_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04105PE=3SV=1	REV__tr|A0A7D6ZHS9|A0A7D6ZHS9_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04105PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.314453125	2	529.303655	1056.59276	-1.6766	-0.00088745	-0.89697	-0.00047477	-2.5736	-0.0013622	529.8055597333026	92.988	0.55108	90.481	90.262	90.813	-2.5072					16	10	3	0	0	0	0.027462	1	8083	8083		16.473	0	1	40909	+		19857	32036	16201	16225	21957	21957					0.06672530363289297
INKVNVVNI	9	Unmodified	_INKVNVVNI_					0	0	0		tr|A0A7D6VN82|A0A7D6VN82_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17885PE=4SV=1	tr|A0A7D6VN82|A0A7D6VN82_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17885PE=4SV=1	tr|A0A7D6VN82|A0A7D6VN82_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17885PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.3512878417969	2	506.811116	1011.60768	2.2577	0.0011442	0.58738	0.00029769	2.8451	0.0014419	506.81141249071817	98.714	0.81679	98.714	98.419	99.236	0					24	19	2	0	0	0	0.027417	1	10918	10918		45.952	0	1	768610			19858	34682	16202	16226	21958	21958					0.10234022231293238
INLAGFDNF	9	Unmodified	_INLAGFDNF_					0	0	0			REV__nc|ENSG00000152520|Q58A45-4|PAN3	REV__nc|ENSG00000152520|Q58A45-4|PAN3	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.3317565917969	2	505.750724	1009.4869	-0.21959	-0.00011106	-3.3814	-0.0017102	-3.601	-0.0018212	505.7490142396489	47.401	0.65347	47.401	46.985	47.638	0					17	14	2	0	0	0	0.027462	1	3403	3403		17.365	0	1	183430	+		19859	20291	16203	16227	21959	21959					-0.017468054821961232
INLCFHQQF	9	Unmodified	_INLCFHQQF_					0	0	0		L1ME4a_dup15683|chr7:135159667-135159953:+|1.2796223879496305|0.4304620133998951|1.57|429.0|12|1|anti-sense	L1ME4a_dup15683|chr7:135159667-135159953:+|1.2796223879496305|0.4304620133998951|1.57|429.0|12|1|anti-sense	L1ME4a_dup15683|chr7:135159667-135159953:+|1.2796223879496305|0.4304620133998951|1.57|429.0|12|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	574.75732421875	2	575.279126	1148.5437	-0.78638	-0.00045239	3.8284	0.0022024	3.042	0.00175	575.2814244110217	63.592	0.19148	60.117	60.012	60.204	-3.475					5	3	2	0	0	0	0.027462	1	4473	4473		23.042	6.5693	1	14005			19860	14622	16204	16228	21960	21960					-0.024630811973111122
INLCHNMN	8	Unmodified	_INLCHNMN_					0	0	0		ENSG00000121005|ENST00000262207|CRISPLD1	ENSG00000121005|ENST00000262207|CRISPLD1	ENSG00000121005|ENST00000262207|CRISPLD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.94110107421875	2	479.715304	957.416056	-0.30866	-0.00014807	3.4111	0.0016363	3.1024	0.0014883	479.71690111636633	62.901	0.53009	59.443	59.21	59.74	-3.4577					13	10	2	0	0	0	0.028476	1	4409	4409		38.806	2.3594	1	13876			19861	3464	16205	16229	21961	21961					-0.0643554506301598
INLCHSPSIPP	11	Unmodified	_INLCHSPSIPP_					0	0	0		PIH1D1|p.I69L|1|0.05|ENSG00000104872|chr19:49449607-49449607|T/G|missense_variant	PIH1D1|p.I69L|1|0.05|ENSG00000104872|chr19:49449607-49449607|T/G|missense_variant	PIH1D1|p.I69L|1|0.05|ENSG00000104872|chr19:49449607-49449607|T/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	589.351318359375	2	589.305341	1176.59613	-1.9749	-0.0011638	1.6966	0.00099982	-0.27828	-0.00016399	589.3063001626108	88.543	0.90063	85.94	85.679	86.58	-2.6027					27	17	2	0	0	0	0.02539	1	7591	7591		51.193	0	1	115300			19862	15501	16206	16230	21962	21962					0.014894571456352423
INLESQYL	8	Unmodified	_INLESQYL_					0	0	0		RBM48|p.S174Ffs*8|1|0.1|ENSG00000127993|chr7:92534472-92534473|-/T|frameshift_variant;ENSG00000127993|ENST00000265732|RBM48;nc|ENSG00000127993|Q5RL73-2|RBM48	RBM48|p.S174Ffs*8|1|0.1|ENSG00000127993|chr7:92534472-92534473|-/T|frameshift_variant	RBM48|p.S174Ffs*8|1|0.1|ENSG00000127993|chr7:92534472-92534473|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	490.3361511230469	2	490.258382	978.502212	0.090852	4.4541E-05	-0.98705	-0.00048391	-0.8962	-0.00043937	490.2579333157135	136.44	0.97504	136.21	135.72	136.69	-0.22697					32	19	2	0	0	0	0.028476	1	13509	13509		35.618	1.4457	1	27443			19863	3859	16207	16231	21963	21963					0.012100613149868877
INLFGLITVKS	11	Unmodified	_INLFGLITVKS_					0	0	0		tr|A0A7D6VN96|A0A7D6VN96_9CLOTSpoIVBpeptidaseOS=ClostridiumintestinaleOX=36845GN=spoIVBPE=4SV=1	tr|A0A7D6VN96|A0A7D6VN96_9CLOTSpoIVBpeptidaseOS=ClostridiumintestinaleOX=36845GN=spoIVBPE=4SV=1	tr|A0A7D6VN96|A0A7D6VN96_9CLOTSpoIVBpeptidaseOS=ClostridiumintestinaleOX=36845GN=spoIVBPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	402.2470703125	3	402.24818	1203.72271	1.1976	0.00048174	-3.1957	-0.0012854	-1.998	-0.0008037	402.24676330715766	59.364	1.5677	56.584	56.241	57.809	-2.7801					71	29	3	0	0	0	0.6986	1	4333	4333		30.139	4.2474	1	322370			19864	34685	16208	16232	21964	21964					0.1289970664242901
INLFGLITVKS	11	Unmodified	_INLFGLITVKS_					0	0	0		tr|A0A7D6VN96|A0A7D6VN96_9CLOTSpoIVBpeptidaseOS=ClostridiumintestinaleOX=36845GN=spoIVBPE=4SV=1	tr|A0A7D6VN96|A0A7D6VN96_9CLOTSpoIVBpeptidaseOS=ClostridiumintestinaleOX=36845GN=spoIVBPE=4SV=1	tr|A0A7D6VN96|A0A7D6VN96_9CLOTSpoIVBpeptidaseOS=ClostridiumintestinaleOX=36845GN=spoIVBPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	402.24818	1203.72271	2.2667	0.00091176	-4.3482	-0.0017491	-2.0816	-0.00083731	402.2462744975476	60.303	1.4386	56.873	56.553	57.991	-3.43	0.14472	-0.00093879	NaN	30.139	71	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	311430			19865	34685	16208	16232							0.1289970664242901
INLIKLCKL	9	Unmodified	_INLIKLCKL_					0	0	0		tr|A0A553SU93|A0A553SU93_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_06530PE=4SV=1	tr|A0A553SU93|A0A553SU93_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_06530PE=4SV=1	tr|A0A553SU93|A0A553SU93_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_06530PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.3436889648438	2	529.343738	1056.67292	1.1035	0.00058412	-2.2116	-0.0011707	-1.1082	-0.0005866	529.3422914164887	143.23	0.73196	143.23	142.88	143.61	0					33	14	3	0	0	0	0.61208	1	16731	16731		30.504	8.5438	1	162310			19866	34586	16209	16233	21965	21965					0.14685300432779513
INLINKAGTIL	11	Unmodified	_INLINKAGTIL_					0	0	0		tr|A0A7D6VQ96|A0A7D6VQ96_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01940PE=4SV=1	tr|A0A7D6VQ96|A0A7D6VQ96_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01940PE=4SV=1	tr|A0A7D6VQ96|A0A7D6VQ96_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01940PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	585.8665161132812	2	585.366256	1168.71796	-1.8125	-0.001061	3.0358	0.0017771	1.2233	0.00071611	585.3678346208208	127.3	0.59527	125.86	125.54	126.14	-1.4357					28	11	3	0	0	0	0.63561	1	12152	12152		41.427	4.9799	1	39817			19867	34830	16210	16234	21966	21966					0.14034822499684196
INLINKAGTIL	11	Unmodified	_INLINKAGTIL_					0	0	0		tr|A0A7D6VQ96|A0A7D6VQ96_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01940PE=4SV=1	tr|A0A7D6VQ96|A0A7D6VQ96_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01940PE=4SV=1	tr|A0A7D6VQ96|A0A7D6VQ96_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01940PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	585.366256	1168.71796	0.42639	0.0002496	2.0385	0.0011933	2.4649	0.0014429	585.367364875304	125.88	0.74286	125.64	125.26	126	-0.2359	-0.14536	-0.00031183	NaN	41.427	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24473			19868	34830	16210	16234							0.14034822499684196
INLINKAGTIL	11	Unmodified	_INLINKAGTIL_					0	0	0		tr|A0A7D6VQ96|A0A7D6VQ96_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01940PE=4SV=1	tr|A0A7D6VQ96|A0A7D6VQ96_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01940PE=4SV=1	tr|A0A7D6VQ96|A0A7D6VQ96_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01940PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	585.366256	1168.71796	-0.15224	-8.9116E-05	1.0855	0.00063539	0.93322	0.00054627	585.3672448840537	126.93	0.83582	125.86	125.39	126.22	-1.0715	0.071988	-0.0014276	NaN	41.427	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38968			19869	34830	16210	16234							0.14034822499684196
INLKIGDET	9	Unmodified	_INLKIGDET_					0	0	0			REV__tr|A0A553SFN4|A0A553SFN4_NIACIAcetylglutamatekinaseOS=NialliacirculansOX=1397GN=argBPE=3SV=1	REV__tr|A0A553SFN4|A0A553SFN4_NIACIAcetylglutamatekinaseOS=NialliacirculansOX=1397GN=argBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.7942199707031	2	501.776939	1001.53933	0.45734	0.00022948	3.8478	0.0019307	4.3052	0.0021602	501.77880123634253	110.21	0.26328	108.61	108.38	108.65	-1.6011					6	4	2	0	0	0	0.027462	1	10118	10118		16.473	3.514	1	5585.6	+		19870	29597	16211	16235	21967	21967					0.038617328607642776
INLKKSLAY	9	Unmodified	_INLKKSLAY_					0	0	0		ENST00000440896.2_1_11:59856214-59861079:+|nuORF;ENSG00000149534|ENST00000278888|MS4A2	ENST00000440896.2_1_11:59856214-59861079:+|nuORF	ENST00000440896.2_1_11:59856214-59861079:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	525.3209228515625	2	525.321317	1048.62808	0.086273	4.5321E-05	-0.47321	-0.00024859	-0.38694	-0.00020327	525.3209005823802	108.58	1.5334	108.35	108.03	109.56	-0.22498					66	30	4	0	0	0	0.48324	1	10189	10189		44.117	19.598	1	308970			19871	5468	16212	16236	21968	21968					0.10571192891075043
INLKKSLAY	9	Unmodified	_INLKKSLAY_					0	0	0		ENST00000440896.2_1_11:59856214-59861079:+|nuORF;ENSG00000149534|ENST00000278888|MS4A2	ENST00000440896.2_1_11:59856214-59861079:+|nuORF	ENST00000440896.2_1_11:59856214-59861079:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	525.321317	1048.62808	-0.54512	-0.00028636	0.25684	0.00013492	-0.28828	-0.00015144	525.3212313053551	109.83	1.3661	108.69	108.3	109.66	-1.1444	0.066452	0.00062698	NaN	44.117	65	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	320760			19872	5468	16212	16236							0.10571192891075043
INLKLERF	8	Unmodified	_INLKLERF_					0	0	0		ENSG00000149575|ENST00000278947|SCN2B	ENSG00000149575|ENST00000278947|SCN2B	ENSG00000149575|ENST00000278947|SCN2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2713012695312	2	516.813659	1031.61277	1.7898	0.000925	-0.48934	-0.0002529	1.3005	0.0006721	516.8133936508232	91.958	0.42106	91.958	91.711	92.132	0					14	9	2	0	0	0	0.028476	1	9900	9900		40.778	0	1	213940			19873	5475	16213	16237	21969	21969					0.09822326093899392
INLKPEPL	8	Unmodified	_INLKPEPL_					0	0	0		tr|A0A7D6W1D6|A0A7D6W1D6_9CLOTAldehydedehydrogenasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02350PE=3SV=1	tr|A0A7D6W1D6|A0A7D6W1D6_9CLOTAldehydedehydrogenasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02350PE=3SV=1	tr|A0A7D6W1D6|A0A7D6W1D6_9CLOTAldehydedehydrogenasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02350PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.281494140625	2	462.28166	922.548768	-0.35851	-0.00016573	0.40144	0.00018558	0.042938	1.9849E-05	462.2815442810292	115.81	1.6716	114.41	114.12	115.79	-1.3977					74	32	5	0	0	0	0.62474	1	10827	10827		58.782	5.4305	1	352540			19874	35407	16214	16238	21970	21970					0.0843954593693752
INLLGSIPK	9	Unmodified	_INLLGSIPK_					0	0	0		tr|A0A7D6W0Z7|A0A7D6W0Z7_9CLOTHlyC/CorCfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_01725PE=3SV=1	tr|A0A7D6W0Z7|A0A7D6W0Z7_9CLOTHlyC/CorCfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_01725PE=3SV=1	tr|A0A7D6W0Z7|A0A7D6W0Z7_9CLOTHlyC/CorCfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_01725PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.301513671875	2	477.80276	953.590967	0.19893	9.505E-05	-1.2448	-0.00059479	-1.0459	-0.00049974	477.80175866913936	58.229	0.62614	58.229	58.069	58.696	0					21	14	2	0	0	0	0.027433	1	5004	5004		34.173	6.2903	1	382650			19875	35395	16215	16239	21971	21971					0.11231521345337114
INLLIRWH	8	Unmodified	_INLLIRWH_					0	0	0		tr|A0A553SFV1|A0A553SFV1_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09525PE=4SV=1	tr|A0A553SFV1|A0A553SFV1_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09525PE=4SV=1	tr|A0A553SFV1|A0A553SFV1_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09525PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	533.8037719726562	2	532.821818	1063.62908	-2.0688	-0.0011023	-1.8884	-0.0010062	-3.9572	-0.0021085	532.8206336296074	54.965	1.1457	52.151	51.872	53.017	-2.8139					48	22	3	0	0	0	0.028476	1	3891	3891		26.796	0	1	154410			19876	33080	16216	16240	21972	21972					0.09981452050624284
INLLKGQYI	9	Unmodified	_INLLKGQYI_					0	0	0			REV__tr|A0A7D6VW97|A0A7D6VW97_9CLOTGer(X)CfamilysporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03230PE=3SV=1	REV__tr|A0A7D6VW97|A0A7D6VW97_9CLOTGer(X)CfamilysporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03230PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.32275390625	2	531.321317	1060.62808	-2.3073	-0.0012259	2.3615	0.0012547	0.054154	2.8773E-05	531.3224308363493	124.85	1.1856	123.46	123.13	124.31	-1.3908					58	22	3	0	0	0	0.59983	1	11841	11841		31.955	1.4512	1	153300	+		19877	31743	16217	16241	21973	21973					0.10019192891104467
INLMYHSLI	9	Unmodified	_INLMYHSLI_					0	0	0			REV__tr|A0A553SPL2|A0A553SPL2_NIACICobalamin-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_26520PE=4SV=1	REV__tr|A0A553SPL2|A0A553SPL2_NIACICobalamin-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_26520PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.7322387695312	2	552.299527	1102.5845	1.8319	0.0010117	3.1589	0.0017446	4.9907	0.0027564	552.301433252843	102.96	0.29202	102.96	102.81	103.1	0					9	6	2	0	0	0	0.027447	1	11489	11489		56.721	0	1	535370	+		19878	30545	16218	16242	21974	21974					0.03731260122299318
INLNLSDLVLP	11	Unmodified	_INLNLSDLVLP_					0	0	0			REV__nc|ENSG00000140798|Q96J65|ABCC12	REV__nc|ENSG00000140798|Q96J65|ABCC12	MULTI-MSMS	OvCa9_classI_Rep3	3	605.8554077148438	2	605.855721	1209.69689	1.4544	0.00088118	-1.5967	-0.00096734	-0.14222	-8.6165E-05	605.8546440314993	133.02	1.7212	131.9	131.58	133.3	-1.1249					92	34	4	0	0	0	0.52842	2	10655	10655;10684		51.193	6.8155	1	499230	+		19879	19701	16219	16243	21975;21976	21975					0.10042812400138246
INLRDVAPR	9	Unmodified	_INLRDVAPR_					0	0	0			REV__ENSG00000198691|ENST00000370225|ABCA4	REV__ENSG00000198691|ENST00000370225|ABCA4	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.3120727539062	2	527.311815	1052.60908	0.015558	8.2042E-06	-0.0018204	-9.599E-07	0.013738	7.2443E-06	527.3116773423632	33.079	1.7375	30.384	29.903	31.641	-2.6954					77	33	4	0	0	0	0.42676	1	867	867		49.442	7.0454	1	327680	+		19880	23044	16220	16244	21977	21977					0.08487656320016868
INLRDVAPR	9	Unmodified	_INLRDVAPR_					0	0	0			REV__ENSG00000198691|ENST00000370225|ABCA4	REV__ENSG00000198691|ENST00000370225|ABCA4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	527.311815	1052.60908	-1.1315	-0.00059667	1.0476	0.00055242	-0.083911	-4.4247E-05	527.3121410110987	33.105	0.74924	30.395	30.222	30.972	-2.7097	0.0058131	0.00088923	NaN	49.442	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56132	+		19881	23044	16220	16244							0.08487656320016868
INLSMNRR	8	Unmodified	_INLSMNRR_					0	0	0			REV__ENSG00000176490|ENST00000323469|DIRAS1	REV__ENSG00000176490|ENST00000323469|DIRAS1	MULTI-MSMS	OvCa99_classI_Rep5	1	502.2774353027344	2	502.276918	1002.53928	1.2313	0.00061846	-0.26272	-0.00013196	0.9686	0.0004865	502.27667389611	123.35	1.5162	123.35	122.86	124.37	0					81	32	5	0	0	0	0.59148	1	14200	14200		65.803	0	1	2587700	+		19882	21955	16221	16245	21978	21978					0.03811454379774659
INLTYTQTK	9	Unmodified	_INLTYTQTK_					0	0	0		tr|A0A7D7AFJ8|A0A7D7AFJ8_9CLOTRhodanese-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05925PE=4SV=1	tr|A0A7D7AFJ8|A0A7D7AFJ8_9CLOTRhodanese-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05925PE=4SV=1	tr|A0A7D7AFJ8|A0A7D7AFJ8_9CLOTRhodanese-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05925PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	541.2959594726562	2	541.298039	1080.58152	-1.409	-0.00076271	-1.5416	-0.00083445	-2.9506	-0.0015972	541.297081614145	33.056	0.94622	30.346	30.025	30.972	-2.7097					31	18	2	0	0	0	0.46356	1	1149	1149		45.972	6.7194	1	133490			19883	36255	16222	16246	21979	21979					0.04445708269122406
INLVDWSEA	9	Unmodified	_INLVDWSEA_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.8383178710938	2	523.761289	1045.50803	-1.0096	-0.0005288	-3.5613	-0.0018653	-4.5709	-0.0023941	524.2599259197143	101.41	0.39554	100.65	100.42	100.81	-0.76401					11	7	2	0	0	0	0.027343	1	9313	9313		90.777	27.47	1	7183.8			19884	4368	16223	16247	21980	21980					-0.01290840173351171
INLWCFWF	8	Unmodified	_INLWCFWF_					0	0	0			REV__ENST00000392350.7_1_2:190635870-190636011:-|nuORF	REV__ENST00000392350.7_1_2:190635870-190636011:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	564.8092651367188	2	564.770406	1127.52626	-0.74646	-0.00042158	-0.81806	-0.00046201	-1.5645	-0.0008836	564.7697529631075	94.678	0.95383	92.782	92.612	93.565	-1.8956					33	18	3	0	0	0	0.028476	1	6211	6211		29.842	0	1	44410	+		19885	25254	16224	16248	21981	21981					-0.03240376732333061
INMLKFNHK	9	Unmodified	_INMLKFNHK_					0	0	0		ENST00000437916.2_1_2:45148822-45149500:-|nuORF	ENST00000437916.2_1_2:45148822-45149500:-|nuORF	ENST00000437916.2_1_2:45148822-45149500:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.25732421875	2	572.818418	1143.62228	1.0907	0.00062476	-2.4569	-0.0014073	-1.3662	-0.00078258	572.8167095861437	144.62	0.63101	144.62	144.4	145.04	0					22	12	3	0	0	0	0.027462	1	16928	16928		23.042	0	1	84085			19886	11892	16225	16249	21982	21982					0.0562177110778066
INMMEYLLQ	9	Oxidation (M)	_INM(Oxidation (M))MEYLLQ_		INM(0.5)M(0.5)EYLLQ		INM(0)M(0)EYLLQ	0	0	1		ENSG00000130772|ENST00000373842|MED18;ENST00000475655.1_1_1:28655643-28657251:+|nuORF;MED18-SEL1L3|1|fusion;MED18|p.F117Hfs*18|1|0.12|ENSG00000130772|chr1:28334691-28334692|-/CATCACCACGCCCAGCTAA|frameshift_variant	ENSG00000130772|ENST00000373842|MED18	ENSG00000130772|ENST00000373842|MED18	MSMS	OvCa99_classI_Rep5	1	585.7808837890625	2	585.78031	1169.54607	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.49	1	149.49	148.99	149.99	0								0	0	0	0.16727	1	17499	17499		58.782	7.4465	2				19887	4013	16226	16250	21983	21983		122;123			-0.0319241357451574
INMNKKLVL	9	Unmodified	_INMNKKLVL_					0	0	0		tr|A0A7D6VSA2|A0A7D6VSA2_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15310PE=4SV=1	tr|A0A7D6VSA2|A0A7D6VSA2_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15310PE=4SV=1	tr|A0A7D6VSA2|A0A7D6VSA2_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15310PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.34326171875	2	536.830995	1071.64744	-1.9125	-0.0010267	-3.9795	-0.0021363	-5.892	-0.003163	536.8287392031252	44.932	0.36131	41.894	41.714	42.075	-3.0385					12	6	2	0	0	0	0.027462	1	2277	2277		23.042	1.0826	1	93442			19888	35003	16227	16251	21984	21984					0.11447825910340725
INMNPSNDLKP	11	Unmodified	_INMNPSNDLKP_					0	0	0			REV__nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	REV__nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	MULTI-SECPEP	OvCa99_classI_Rep5	1	621.3139038085938	2	621.810987	1241.60742	1.4985	0.00093178	-0.49262	-0.00030632	1.0059	0.00062546	622.3125424844861	117.15	1.5164	117.15	116.64	118.16	0					72	32	5	0	0	0	0.02523	1	13444	13444		46.457	0	1	561450	+		19889	18666	16228	16252	21985	21985					-0.003717655509035467
INNEEKALEV	10	Unmodified	_INNEEKALEV_					0	0	0		tr|A0A7D6ZJA0|A0A7D6ZJA0_9CLOTTetratricopeptiderepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07915PE=4SV=1	tr|A0A7D6ZJA0|A0A7D6ZJA0_9CLOTTetratricopeptiderepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07915PE=4SV=1	tr|A0A7D6ZJA0|A0A7D6ZJA0_9CLOTTetratricopeptiderepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07915PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.834228515625	2	579.803685	1157.59282	-0.26686	-0.00015473	3.7688	0.0021852	3.502	0.0020305	579.8058922059781	66.596	2.3143	66.596	66.25	68.564	0					118	57	6	0	0	0	0.026681	1	6344	6344		52.937	15.778	1	47674000			19890	35638	16229	16253	21986	21986					0.020324855725903035
INNIKVGSVYI	11	Unmodified	_INNIKVGSVYI_					0	0	0			REV__tr|A0A553SGA5|A0A553SGA5_NIACIPTSsorbitoltransportersubunitIIBOS=NialliacirculansOX=1397GN=CEQ21_10485PE=4SV=1	REV__tr|A0A553SGA5|A0A553SGA5_NIACIPTSsorbitoltransportersubunitIIBOS=NialliacirculansOX=1397GN=CEQ21_10485PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	407.2392272949219	3	407.239684	1218.69722	0.7999	0.00032575	0.76649	0.00031214	1.5664	0.00063789	407.23992433528065	41.279	1.0121	41.279	40.969	41.982	0					51	22	4	0	0	0	0.68709	1	2561	2561		34.087	0	1	494810	+		19891	29677	16230	16254	21987	21987					0.09662232120012959
INNKLEDW	8	Unmodified	_INNKLEDW_					0	0	0		ENST00000347869.7_1_3:50144979-50147044:+|nuORF	ENST00000347869.7_1_3:50144979-50147044:+|nuORF	ENST00000347869.7_1_3:50144979-50147044:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.3360595703125	2	516.261456	1030.50836	0.22973	0.0001186	-1.77	-0.00091377	-1.5402	-0.00079517	516.2605297492627	45.434	0.29223	45.434	45.332	45.624	0					11	6	2	0	0	0	0.028476	1	3161	3161		31.955	0	1	247540			19892	10634	16231	16255	21988	21988					-0.005674204534898308
INNNHLYVVQ	10	Unmodified	_INNNHLYVVQ_					0	0	0			REV__nc|ENSG00000011465|P07585-3|DCN	REV__nc|ENSG00000011465|P07585-3|DCN	MULTI-MSMS	OvCa99_classI_Rep5	1	607.32275390625	2	607.319837	1212.62512	2.1781	0.0013228	3.6641	0.0022253	5.8422	0.0035481	607.3218798462815	96.748	0.63247	96.748	96.418	97.05	0					42	14	4	0	0	0	0.58667	1	10618	10618		24.519	0	1	1545900	+		19893	16493	16232	16256	21989	21989					0.027313177662790622
INNNIIQNI	9	Unmodified	_INNNIIQNI_					0	0	0			REV__tr|A0A553SU90|A0A553SU90_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06575PE=4SV=1	REV__tr|A0A553SU90|A0A553SU90_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06575PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.82373046875	2	528.29583	1054.57711	2.9018	0.001533	0.24319	0.00012847	3.145	0.0016615	528.2959810172896	89.715	0.37704	89.715	89.6	89.977	0					13	8	2	0	0	0	0.027462	1	9620	9620		29.15	0	1	300760	+		19894	31051	16233	16257	21990	21990					0.052002438462295686
INNNKMKSFR	10	Unmodified	_INNNKMKSFR_					0	0	0		SLITRK1|p.I118M|1|0.07|ENSG00000178235|chr13:83881154-83881154|G/C|missense_variant	SLITRK1|p.I118M|1|0.07|ENSG00000178235|chr13:83881154-83881154|G/C|missense_variant	SLITRK1|p.I118M|1|0.07|ENSG00000178235|chr13:83881154-83881154|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	626.33935546875	2	626.334964	1250.65538	2.0915	0.00131	3.429	0.0021477	5.5206	0.0034577	626.337004210225	123.71	1.9187	122.67	121.68	123.6	-1.0377					71	36	4	0	0	0	0.50999	1	9569	9569		52.937	1.4089	1	298190			19895	32837	16234	16258	21991	21991					0.040073531598181944
INNRAHFTI	9	Unmodified	_INNRAHFTI_					0	0	0		tr|A0A553SHP6|A0A553SHP6_NIACIHTHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13395PE=4SV=1	tr|A0A553SHP6|A0A553SHP6_NIACIHTHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13395PE=4SV=1	tr|A0A553SHP6|A0A553SHP6_NIACIHTHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13395PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	543.8309326171875	2	543.296165	1084.57778	-1.0761	-0.00058462	-3.2504	-0.0017659	-4.3265	-0.0023505	543.795872008618	115.68	0.74162	115.56	115.19	115.94	-0.11777					20	14	2	0	0	0	0.027462	1	11040	11040		21.96	3.6355	1	22969			19896	33295	16235	16259	21992	21992					0.03887083285940207
INNSFAPEKLQ	11	Unmodified	_INNSFAPEKLQ_					0	0	0		nc|ENSG00000138346|P51530-2|DNA2;nc|ENSG00000138346|P51530-3|DNA2;nc|ENSG00000138346|P51530-4|DNA2;ENSG00000138346|ENST00000358410|DNA2	nc|ENSG00000138346|P51530-2|DNA2	nc|ENSG00000138346|P51530-2|DNA2	MULTI-MSMS	OvCa99_classI_Rep5	1	630.8377075195312	2	630.832777	1259.651	2.7516	0.0017358	2.0441	0.0012895	4.7957	0.0030253	630.8334281396717	94.819	0.63922	94.819	94.604	95.244	0					33	14	3	0	0	0	0.67712	1	10328	10328		37.508	2.3561	1	727760			19897	4675	16236	16260	21993	21993					0.031561672178895606
INNSFLRDH	9	Unmodified	_INNSFLRDH_					0	0	0		ENSG00000156475|ENST00000394411|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B	ENSG00000156475|ENST00000394411|PPP2R2B	ENSG00000156475|ENST00000394411|PPP2R2B	MULTI-SECPEP	OvCa9_classI_Rep2	2	557.8453369140625	2	558.283254	1114.55196	1.6924	0.00094486	4.2576	0.002377	5.9501	0.0033218	559.2870671288944	87.44	0.74507	86.009	85.543	86.288	-1.4311					29	14	3	0	0	0	0.027462	1	7656	7656		20.947	0	1	21787			19898	5842	16237	16261	21994	21994					-0.0007381095631444623
INNSQLLLV	9	Unmodified	_INNSQLLLV_					0	0	0			REV__ENSG00000175928|ENST00000319331|LRRN1	REV__ENSG00000175928|ENST00000319331|LRRN1	MSMS	OvCa9_classI_Rep3	3	507.30322265625	2	507.303124	1012.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.738	1	95.979	95.479	96.479	-1.7595								0	0	0	0.03228	1	6494	6494		87.696	2.7809	1		+		19899	21923	16238	16262	21995	21995					0.0859031599438822
INNVVIYF	8	Unmodified	_INNVVIYF_					0	0	0		ENSG00000127530|ENST00000641666|OR7C1	ENSG00000127530|ENST00000641666|OR7C1	ENSG00000127530|ENST00000641666|OR7C1	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.8132019042969	2	491.273835	980.533118	-0.18924	-9.297E-05	-3.581	-0.0017592	-3.7702	-0.0018522	491.27170262963034	67.32	0.94149	67.32	67.136	68.077	0					29	23	2	0	0	0	0.028476	1	6404	6404		21.702	0	1	433380			19900	3838	16239	16263	21996	21996					0.04207259419899856
INPDHQPDC	9	Unmodified	_INPDHQPDC_					0	0	0			REV__ENSG00000220948|ENST00000534741|TRIM51G	REV__ENSG00000220948|ENST00000534741|TRIM51G	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.7798461914062	2	519.719098	1037.42364	-1.2197	-0.00063391	-4.4301	-0.0023024	-5.6498	-0.0029363	519.7164930335284	41.482	0.88343	38.502	38.023	38.906	-2.9804					28	16	2	0	0	0	0.027462	1	1885	1885		39.253	8.9351	1	14066	+		19901	23336	16240	16264	21997	21997					-0.09357114261729294
INPLHVPIN	9	Unmodified	_INPLHVPIN_					0	0	0			REV__nc|ENSG00000012817|Q9BY66-2|KDM5D	REV__nc|ENSG00000012817|Q9BY66-2|KDM5D	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.8127136230469	2	508.798009	1015.58147	2.4249	0.0012338	2.7669	0.0014078	5.1918	0.0026416	508.79935549592983	106.19	0.39369	106.19	105.97	106.36	0					15	8	2	0	0	0	0.027433	1	11966	11966		34.173	0	1	349170	+		19902	16499	16241	16265	21998	21998					0.07429753059795985
INPPISEIN	9	Unmodified	_INPPISEIN_					0	0	0			REV__tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	REV__tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.771240234375	2	498.771657	995.528761	-0.57303	-0.00028581	-0.65837	-0.00032838	-1.2314	-0.00061419	498.77120513452377	136.26	1.1223	136.03	135.72	136.84	-0.22696					46	22	3	0	0	0	0.51177	1	13555	13555		41.427	2.6205	1	27028	+		19903	31876	16242	16266	21999	21999					0.03081750206331435
INPRLAKKK	9	Unmodified	_INPRLAKKK_					0	0	0		tr|A0A7D6VRC6|A0A7D6VRC6_9CLOTUPF0229proteinHZF06_05025OS=ClostridiumintestinaleOX=36845GN=yhbHPE=3SV=1	tr|A0A7D6VRC6|A0A7D6VRC6_9CLOTUPF0229proteinHZF06_05025OS=ClostridiumintestinaleOX=36845GN=yhbHPE=3SV=1	tr|A0A7D6VRC6|A0A7D6VRC6_9CLOTUPF0229proteinHZF06_05025OS=ClostridiumintestinaleOX=36845GN=yhbHPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.3208618164062	2	534.356025	1066.6975	-1.9091	-0.0010201	1.1808	0.00063095	-0.72836	-0.0003892	534.3555896509054	54.833	0.35899	51.586	51.336	51.695	-3.2474					9	6	2	0	0	0	0.027462	1	3400	3400		37.159	0	1	11854			19904	34916	16243	16267	22000	22000					0.16681696630507759
INPVGLHTY	9	Unmodified	_INPVGLHTY_					0	0	0			REV__ENST00000281928.7_2_12:116408424-116409929:-|nuORF	REV__ENST00000281928.7_2_12:116408424-116409929:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.8098449707031	2	507.274367	1012.53418	-0.41429	-0.00021016	0.55907	0.0002836	0.14479	7.3447E-05	507.2732467734438	21.812	0.90985	20.474	20.068	20.978	-1.3386					42	17	4	0	0	0	0.027462	1	213	213		16.473	0	1	37877	+		19905	24118	16244	16268	22001	22001					0.028414737888056152
INPVLVDKN	9	Unmodified	_INPVLVDKN_					0	0	0		tr|A0A7D6ZWP7|A0A7D6ZWP7_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08850PE=4SV=1	tr|A0A7D6ZWP7|A0A7D6ZWP7_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08850PE=4SV=1	tr|A0A7D6ZWP7|A0A7D6ZWP7_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08850PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.82275390625	2	506.295299	1010.57605	-1.0694	-0.00054142	1.0262	0.00051954	-0.043206	-2.1875E-05	506.29569644167435	70.684	1.2126	67.202	66.787	67.999	-3.4812					54	24	3	0	0	0	0.027462	1	5338	5338		29.17	11.805	1	628850			19906	35849	16245	16269	22002	22002					0.07118029477328491
INPVRSII	8	Unmodified	_INPVRSII_					0	0	0			REV__nc|ENSG00000168538|Q7Z392-3|TRAPPC11	REV__nc|ENSG00000168538|Q7Z392-3|TRAPPC11	MULTI-MSMS	OvCa9_classI_Rep3	3	456.2873840332031	2	456.287277	910.560001	-1.1127	-0.0005077	0.9728	0.00044388	-0.13988	-6.3825E-05	456.28760351024965	93.563	1.8059	91.601	90.79	92.595	-1.9617					94	35	4	0	0	0	0.45246	1	6001	6001		82.305	0	1	289620	+		19907	28993	16246	16270	22003	22003					0.1011436803109973
INQDLPLVQ	9	Unmodified	_INQDLPLVQ_					0	0	0			REV__nc|ENSG00000290203|Q96PH1-5|NOX5	REV__nc|ENSG00000290203|Q96PH1-5|NOX5	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.2822875976562	2	520.292756	1038.57096	-0.1977	-0.00010286	0.20672	0.00010755	0.0090206	4.6934E-06	520.2926808475404	63.044	0.86671	63.044	62.703	63.57	0					48	18	4	0	0	0	0.027462	1	5666	5666		30.318	0	1	2681500	+		19908	23525	16247	16271	22004	22004					0.053217256147036096
INQGASILVK	10	Unmodified	_INQGASILVK_					0	0	0		ENST00000498524.5_1_3:15727727-15838055:-|nuORF;nc|ENSG00000206560|O15084-2|ANKRD28;ANKRD28|p.C966Tfs*22|1|0.04|ENSG00000206560|chr3:15670537-15670538|-/ACAATAGTGTT|frameshift_variant;nc|ENSG00000206560|O15084|ANKRD28;ENSG00000206560|ENST00000683139|ANKRD28;nc|ENSG00000206560|O15084-1|ANKRD28;ENST00000462657.1_1_3:15731457-15737643:-|nuORF	ENST00000498524.5_1_3:15727727-15838055:-|nuORF	ENST00000498524.5_1_3:15727727-15838055:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	521.8151245117188	2	521.816399	1041.61824	0.79827	0.00041655	-3.2909	-0.0017172	-2.4926	-0.0013007	521.8145751675044	30.789	0.8863	28.08	27.903	28.789	-2.7097					32	17	3	0	0	0	0.71173	1	879	879		29.17	5.6474	1	123530			19909	93	16248	16272	22005	22005					0.09910004885728085
INQKHDCSW	9	Unmodified	_INQKHDCSW_					0	0	0			REV__ENSG00000126861|ENST00000247271|OMG	REV__ENSG00000126861|ENST00000247271|OMG	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.3004150390625	2	565.756015	1129.49748	2.4389	0.0013798	-1.4286	-0.00080825	1.0102	0.00057155	566.2581224225752	137.13	0.28874	137.13	136.97	137.26	0					6	5	2	0	0	0	0.027447	1	16005	16005		56.721	34.761	1	32624	+		19910	18800	16249	16273	22006	22006					-0.06209146099422469
INQNAKQLE	9	Unmodified	_INQNAKQLE_					0	0	0		RIF1|p.L2186Qfs*51|1|0.07|ENSG00000080345|chr2:151466077-151466077|T/-|frameshift_variant;nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	RIF1|p.L2186Qfs*51|1|0.07|ENSG00000080345|chr2:151466077-151466077|T/-|frameshift_variant	RIF1|p.L2186Qfs*51|1|0.07|ENSG00000080345|chr2:151466077-151466077|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.2864990234375	2	529.285463	1056.55637	-0.23033	-0.00012191	0.22122	0.00011709	-0.0091116	-4.8227E-06	529.2853536749242	68.328	1.2763	64.838	64.526	65.802	-3.4902					61	25	3	0	0	0	0.16524	1	5073	5073		82.305	0.064519	1	732110			19911	1634	16250	16274	22007	22007					0.030356534665770596
INQVLAQSPA	10	Unmodified	_INQVLAQSPA_					0	0	0			REV__nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	REV__nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.7920532226562	2	520.790381	1039.56621	0.78117	0.00040683	-1.0022	-0.00052194	-0.22103	-0.00011511	520.7897504696963	97.014	1.2556	94.588	94.322	95.577	-2.4256					48	24	3	0	0	0	0.59317	1	8584	8584		42.864	0.46813	1	299860	+		19912	23022	16251	16275	22008	22008					0.048008414719333814
INQVLAQSPA	10	Unmodified	_INQVLAQSPA_					0	0	0			REV__nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	REV__nc|ENSG00000198492|Q9Y5A9-2|YTHDF2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	520.790381	1039.56621	0.26807	0.00013961	-0.78728	-0.00041001	-0.51921	-0.0002704	520.789902559688	95.68	1.1431	94.652	94.318	95.461	-1.0281	0.0062779	-0.00033363	NaN	42.864	61	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218830	+		19913	23022	16251	16275							0.048008414719333814
INQWSRAR	8	Unmodified	_INQWSRAR_					0	0	0			REV__chr1:150293898-150294364|116|12.24|0.1|6.87|+|1|MRPS21,None|1	REV__chr1:150293898-150294364|116|12.24|0.1|6.87|+|1|MRPS21,None|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.7959594726562	2	515.780682	1029.54681	-0.62342	-0.00032155	-0.84425	-0.00043545	-1.4677	-0.000757	515.7800899494491	38.933	0.35848	38.933	38.793	39.151	0					16	7	3	0	0	0	0.028476	1	2262	2262		30.504	11.144	1	146050	+		19914	15799	16252	16276	22009	22009					0.03321929971684767
INRKNEEY	8	Unmodified	_INRKNEEY_					0	0	0			REV__tr|A0A7D7A3J2|A0A7D7A3J2_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22010PE=3SV=1	REV__tr|A0A7D7A3J2|A0A7D7A3J2_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22010PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	533.2695922851562	2	533.269813	1064.52507	1.1192	0.00059686	-3.1813	-0.0016965	-2.0621	-0.0010997	533.2677971123935	155.18	0.49702	155.18	154.88	155.38	0					17	9	2	0	0	0	0.66057	1	18173	18173		51.335	1.8939	1	34303	+		19915	32587	16253	16277	22010	22010					-0.004609195675357114
INRLINYVD	9	Unmodified	_INRLINYVD_					0	0	0		tr|A0A7D6ZW63|A0A7D6ZW63_9CLOTFAD-bindingoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17760PE=3SV=1	tr|A0A7D6ZW63|A0A7D6ZW63_9CLOTFAD-bindingoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17760PE=3SV=1	tr|A0A7D6ZW63|A0A7D6ZW63_9CLOTFAD-bindingoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17760PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.7677001953125	2	560.31148	1118.60841	0.80709	0.00045222	-1.3202	-0.00073973	-0.51313	-0.00028751	560.3107734620808	58.043	0.62836	58.043	57.775	58.403	0					37	14	4	0	0	0	0.027462	1	4894	4894		19.997	0.89325	1	1840100			19916	35828	16254	16278	22011	22011					0.053848168803369845
INRLPLPL	8	Unmodified	_INRLPLPL_					0	0	0		ENSG00000141431|ENST00000269197|ASXL3	ENSG00000141431|ENST00000269197|ASXL3	ENSG00000141431|ENST00000269197|ASXL3	MULTI-MSMS	OvCa9_classI_Rep4_	4	468.30645751953125	2	468.30547	934.596387	-0.10884	-5.097E-05	-0.26151	-0.00012247	-0.37035	-0.00017344	468.3052924042457	103.42	2.4994	101.22	100.52	103.02	-2.1981					124	47	5	0	0	0	0.40641	1	9332	9332		86.935	6.9954	1	1560600			19917	4911	16255	16279	22012	22012					0.12647244927802603
INRLTHRLL	9	Unmodified	_INRLTHRLL_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2	ENSG00000055163|ENST00000620254|CYFIP2	ENSG00000055163|ENST00000620254|CYFIP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.8263549804688	2	568.356557	1134.69856	-0.11569	-6.5756E-05	4.3656	0.0024812	4.2499	0.0024154	568.3589540557632	71.355	0.6444	71.355	71.191	71.835	0					30	15	3	0	0	0	0.027462	1	6872	6872		21.96	4.5949	1	355820			19918	1221	16256	16280	22013	22013					0.13659910999399472
INRNLLDPN	9	Unmodified	_INRNLLDPN_					0	0	0		ENSG00000091844|ENST00000206262|RGS17	ENSG00000091844|ENST00000206262|RGS17	ENSG00000091844|ENST00000206262|RGS17	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.8048706054688	2	534.793455	1067.57236	-1.1753	-0.00062854	-2.1179	-0.0011326	-3.2931	-0.0017612	534.7922579193148	56.158	2.1332	52.864	52.311	54.444	-3.2944					86	41	3	0	0	0	0.027418	1	3595	3595		58.782	11.125	1	438690			19919	1877	16257	16281	22014	22014					0.041273597034887644
INRPATNI	8	Unmodified	_INRPATNI_					0	0	0			REV__DNAJB9-DENND5B|1|fusion	REV__DNAJB9-DENND5B|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	449.7588806152344	2	449.758884	897.503215	2.9465	0.0013252	-2.9648	-0.0013334	-0.018253	-8.2094E-06	449.7573478129657	72.018	1.8795	69.511	68.858	70.737	-2.5071					85	35	3	0	0	0	0.66057	1	5827	5827		51.335	1.8939	1	466960	+		19920	16318	16258	16282	22015	22015					0.05036320474550848
INRPATNI	8	Unmodified	_INRPATNI_					0	0	0			REV__DNAJB9-DENND5B|1|fusion	REV__DNAJB9-DENND5B|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	449.75982666015625	2	449.758884	897.503215	-0.57218	-0.00025734	0.3579	0.00016097	-0.21428	-9.6376E-05	449.75894480274974	73.105	1.7734	69.709	69.301	71.075	-3.3961					72	36	3	0	0	0	0.31378	4	5639	5639;5648;5660;5687		104.75	13.97	1	1388000	+		19921	16318	16258	16282	22016;22017;22018;22019	22016					0.05036320474550848
INRPPLLL	8	Unmodified	_INRPPLLL_					0	0	0			REV__nc|ENSG00000024048|Q8IWV8|UBR2	REV__nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	OvCa9_classI_Rep2	2	468.30548095703125	2	468.30547	934.596387	-1.2276	-0.00057488	0.869	0.00040696	-0.35858	-0.00016792	468.30580149557557	101.8	2.1744	101.04	100.67	102.84	-0.76401					107	43	5	0	0	0	0.57878	3	9352	9347;9352;9358		68.485	10.269	1	1285400	+		19922	16563	16259	16283	22020;22021;22022	22021					0.12647244927802603
INRPPLLL	8	Unmodified	_INRPPLLL_					0	0	0			REV__nc|ENSG00000024048|Q8IWV8|UBR2	REV__nc|ENSG00000024048|Q8IWV8|UBR2	MULTI-MSMS	OvCa9_classI_Rep3	3	468.306396484375	2	468.30547	934.596387	-0.11211	-5.25E-05	-0.42977	-0.00020127	-0.54188	-0.00025376	468.30521098510104	102.7	2.1959	101.18	100.63	102.83	-1.5211					138	41	5	0	0	0	0.57878	2	7080	7073;7080		68.485	6.9425	1	1655400	+		19923	16563	16259	16283	22023;22024	22024					0.12647244927802603
INSAASFF	8	Unmodified	_INSAASFF_					0	0	0		ENSG00000144063|ENST00000272462|MALL;ENST00000568189.5_1_2:111003217-111043255:+|nuORF	ENSG00000144063|ENST00000272462|MALL	ENSG00000144063|ENST00000272462|MALL	MULTI-MSMS	OvCa99_classI_Rep5	1	428.715576171875	2	428.713611	855.412668	1.2899	0.00055299	0.97836	0.00041944	2.2682	0.00097243	428.71387103015104	124.51	0.55322	124.51	124.24	124.79	0					18	11	2	0	0	0	0.60331	1	14375	14375		63.306	3.0123	1	132920			19924	5128	16260	16284	22025	22025					-0.02082148573708764
INSAWVPFGLI	11	Unmodified	_INSAWVPFGLI_					0	0	0			REV__tr|A0A7D6VVJ0|A0A7D6VVJ0_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05315PE=4SV=1	REV__tr|A0A7D6VVJ0|A0A7D6VVJ0_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05315PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	608.8362426757812	2	608.839874	1215.66519	-2.9862	-0.0018181	-2.1209	-0.0012913	-5.1071	-0.0031094	608.8384409530391	152.11	1.417	150.68	150.29	151.71	-1.435					87	30	4	0	0	0	0.70142	1	15087	15087		29.17	1.0886	1	285950	+		19925	31720	16261	16285	22026	22026					0.0659886443686446
INSEVFLSLPC	11	Unmodified	_INSEVFLSLPC_					0	0	0		nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD	nc|ENSG00000151116|Q8IX04-6|UEVLD	nc|ENSG00000151116|Q8IX04-6|UEVLD	MULTI-SECPEP	OvCa99_classI_Rep5	1	611.3744506835938	2	611.312832	1220.61111	1.7585	0.001075	-2.5258	-0.0015441	-0.76736	-0.0004691	611.3113148543861	148.44	1.2706	148.44	147.6	148.87	0					40	25	3	0	0	0	0.025701	1	17404	17404		16.717	0	1	71833			19926	5533	16262	16286	22027	22027					0.009629042229789775
INSIGLNTP	9	Unmodified	_INSIGLNTP_					0	0	0			REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF	REV__ENST00000479356.1_1_17:71354047-71433905:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	464.75823974609375	2	464.758549	927.502546	-0.37967	-0.00017645	-0.022364	-1.0394E-05	-0.40203	-0.00018685	464.7586046781556	53.791	1.6311	53.791	53.519	55.15	0					100	38	5	0	0	0	0.27001	1	4282	4282		66.429	5.4573	1	9336200	+		19927	16864	16263	16287	22028	22028					0.03589481034862274
INSLSTLLSY	10	Unmodified	_INSLSTLLSY_					0	0	0			REV__tr|A0A553SGJ4|A0A553SGJ4_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_10975PE=4SV=1	REV__tr|A0A553SGJ4|A0A553SGJ4_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_10975PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.8284301757812	2	555.805697	1109.59684	-0.41248	-0.00022926	-1.6223	-0.00090166	-2.0347	-0.0011309	555.8049336267287	66.326	1.1223	62.835	62.418	63.541	-3.4902					34	22	2	0	0	0	0.026891	1	4771	4771		31.53	13.205	1	162710	+		19928	29707	16264	16288	22029	22029					0.046425750663502185
INSLSTLLSY	10	Unmodified	_INSLSTLLSY_					0	0	0			REV__tr|A0A553SGJ4|A0A553SGJ4_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_10975PE=4SV=1	REV__tr|A0A553SGJ4|A0A553SGJ4_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_10975PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	555.805697	1109.59684	1.8478	0.001027	-3.7101	-0.0020621	-1.8624	-0.0010351	555.8034177225333	65.693	0.89664	62.997	62.67	63.567	-2.6958	0.099774	0.0019556	NaN	51.193	21	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38437	+		19929	29707	16264	16288							0.046425750663502185
INSYSVGSIN	10	Unmodified	_INSYSVGSIN_					0	0	0		tr|A0A553SM66|A0A553SM66_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21985PE=4SV=1	tr|A0A553SM66|A0A553SM66_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21985PE=4SV=1	tr|A0A553SM66|A0A553SM66_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21985PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.7911987304688	2	527.264196	1052.51384	1.5592	0.00082209	3.1283	0.0016494	4.6874	0.0024715	527.2665572765547	93.148	0.83217	93.148	92.594	93.426	0					40	19	4	0	0	0	0.026606	1	10032	10032		44.377	0	1	1404900			19930	33807	16265	16289	22030	22030					-0.010317416616544506
INTIFDELY	9	Unmodified	_INTIFDELY_					0	0	0			REV__nc|ENSG00000138190|Q8TAG9-2|EXOC6	REV__nc|ENSG00000138190|Q8TAG9-2|EXOC6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.28173828125	2	564.284597	1126.55464	2.3231	0.0013109	-4.4661	-0.0025201	-2.143	-0.0012092	564.2819408550066	96.977	1.2023	94.551	94.22	95.423	-2.4256					46	23	3	0	0	0	0.027462	1	8604	8604		24.203	2.2429	1	120450	+		19931	19520	16266	16290	22031	22031					-0.0035740034202262905
INTIFDELY	9	Unmodified	_INTIFDELY_					0	0	0			REV__nc|ENSG00000138190|Q8TAG9-2|EXOC6	REV__nc|ENSG00000138190|Q8TAG9-2|EXOC6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	564.284597	1126.55464	0.093388	5.2697E-05	-3.1127	-0.0017564	-3.0193	-0.0017037	564.2825178244436	95.498	1.1421	94.47	94.169	95.311	-1.0281	-0.032046	-0.00028944	NaN	24.203	43	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86628	+		19932	19520	16266	16290							-0.0035740034202262905
INTIFDELY	9	Unmodified	_INTIFDELY_					0	0	0			REV__nc|ENSG00000138190|Q8TAG9-2|EXOC6	REV__nc|ENSG00000138190|Q8TAG9-2|EXOC6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	564.284597	1126.55464	-1.0878	-0.0006138	-1.4654	-0.00082692	-2.5532	-0.0014407	564.283402881053	96.315	0.96469	94.486	94.123	95.088	-1.8286	-0.016513	0.0015696	NaN	24.203	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102920	+		19933	19520	16266	16290							-0.0035740034202262905
INTIFFPLY	9	Unmodified	_INTIFFPLY_					0	0	0		tr|A0A553SPG4|A0A553SPG4_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_26325PE=4SV=1	tr|A0A553SPG4|A0A553SPG4_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_26325PE=4SV=1	tr|A0A553SPG4|A0A553SPG4_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_26325PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	564.308837890625	2	564.310418	1126.60628	-0.64093	-0.00036169	-3.1776	-0.0017932	-3.8186	-0.0021549	564.3086346308005	121.22	1.0377	121.03	120.61	121.64	-0.19718					60	20	5	0	0	0	0.42676	1	11693	11693		49.442	10.189	1	328140			19934	34039	16267	16291	22032	22032					0.04804388142542848
INTITFLSCT	10	Unmodified	_INTITFLSCT_					0	0	0		chr12:69359236-69362788|199|14.18|0.22|6.03|+|0|TE_info:HAL1,HAL1_dup16795,L1,LINE,donor,-,69358807,69359236|None,YEATS4|1	chr12:69359236-69362788|199|14.18|0.22|6.03|+|0|TE_info:HAL1,HAL1_dup16795,L1,LINE,donor,-,69358807,69359236|None,YEATS4|1	chr12:69359236-69362788|199|14.18|0.22|6.03|+|0|TE_info:HAL1,HAL1_dup16795,L1,LINE,donor,-,69358807,69359236|None,YEATS4|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.2987060546875	2	556.78645	1111.55835	1.327	0.00073884	-1.6053	-0.00089384	-0.27838	-0.000155	556.7857826035563	150.69	0.45021	150.69	150.34	150.79	0					12	8	2	0	0	0	0.026931	1	17624	17624		23.523	0	1	47221			19935	333	16268	16292	22033	22033					0.007029461601632647
INTKKKRKP	9	Unmodified	_INTKKKRKP_					0	0	0			REV__ENST00000513122.5_1_4:76979221-76979772:+|nuORF	REV__ENST00000513122.5_1_4:76979221-76979772:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	556.7919311523438	2	556.866757	1111.71896	0.46579	0.00025938	-1.4809	-0.00082466	-1.0151	-0.00056528	556.8658997455583	69.046	0.29247	65.556	65.312	65.605	-3.4902					8	5	2	0	0	0	0.027462	1	5153	5153		34.173	0.65696	1	21584	+		19936	26975	16269	16293	22034	22034					0.16757081659238793
INTKSQAVK	9	Unmodified	_INTKSQAVK_					0	0	0		ENSG00000162704|ENST00000359856|ARPC5;nc|ENSG00000162704|O15511-2|ARPC5;ENST00000462965.1_1_1:183596669-183602348:-|nuORF;ENST00000602490.1_1_1:183602183-183602348:-|nuORF	ENSG00000162704|ENST00000359856|ARPC5	ENSG00000162704|ENST00000359856|ARPC5	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.77459716796875	2	494.792924	987.571294	0.053863	2.6651E-05	4.1013	0.0020293	4.1552	0.002056	494.7974851158791	45.245	0.91992	45.245	44.662	45.582	0					41	20	3	0	0	0	0.027446	1	3046	3046		51.193	6.8155	1	200710			19937	6217	16270	16294	22035	22035					0.07701145334567627
INTLKLLKEPS	11	Unmodified	_INTLKLLKEPS_					0	0	0		tr|A0A553SM58|A0A553SM58_NIACIDUF4259domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21925PE=4SV=1	tr|A0A553SM58|A0A553SM58_NIACIDUF4259domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21925PE=4SV=1	tr|A0A553SM58|A0A553SM58_NIACIDUF4259domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21925PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	628.38232421875	2	628.384645	1254.75474	-4.0512	-0.0025457	0.66972	0.00042084	-3.3814	-0.0021248	628.3849132400738	150.53	4.7174	149.58	148	152.71	-0.95647					178	94	2	0	0	0	0.71789	1	12805	12805		23.523	0.94304	1	419100			19938	33804	16271	16295	22036	22036					0.1375507432555878
INTNCSAVRTR	11	Unmodified	_INTNCSAVRTR_					0	0	0		ENST00000584463.1_1_17:80008413-80009233:-|nuORF;ENST00000584515.1_1_17:80008413-80009420:-|nuORF;ENST00000580953.5_1_17:80007881-80009420:-|nuORF;ENSG00000169733|ENST00000310496|RFNG	ENST00000584463.1_1_17:80008413-80009233:-|nuORF	ENST00000584463.1_1_17:80008413-80009233:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	412.231689453125	3	412.215544	1233.6248	1.9673	0.00081095	4.0357	0.0016636	6.003	0.0024745	412.21775124584974	65.927	0.30582	62.981	62.755	63.061	-2.9459					8	5	2	0	0	0	0.025701	1	2663	2663		25.892	4.206	1	5631			19939	7036	16272	16296	22037	22037					0.017335747747665664
INTSILLIF	9	Unmodified	_INTSILLIF_					0	0	0		nc|ENSG00000164342|O15455-2|TLR3;TLR3|p.S776Lfs*19|1|0.24|ENSG00000164342|chr4:186084011-186084012|-/C|frameshift_variant;ENSG00000164342|ENST00000296795|TLR3	nc|ENSG00000164342|O15455-2|TLR3	nc|ENSG00000164342|O15455-2|TLR3	MULTI-MSMS	OvCa9_classI_Rep3	3	517.320068359375	2	517.318243	1032.62193	1.1783	0.00060953	1.6312	0.00084385	2.8095	0.0014534	517.3188801990356	113.66	2.2198	112.59	112.25	114.47	-1.0753					98	43	4	0	0	0	0.1944	1	8388	8388		77.318	5.4401	1	525200			19940	6450	16273	16297	22038	22038					0.10692674659571821
INTSPQPQ	8	Unmodified	_INTSPQPQ_					0	0	0			REV__nc|ENSG00000184634|Q93074-3|MED12	REV__nc|ENSG00000184634|Q93074-3|MED12	MULTI-SECPEP	OvCa99_classI_Rep5	1	442.7179260253906	2	442.727249	883.439946	0.61051	0.00027029	-0.20622	-9.1299E-05	0.40429	0.00017899	442.7269720221172	52.224	0.52765	52.224	52.038	52.566	0					17	11	2	0	0	0	0.028476	1	4118	4118		19.997	0	1	555730	+		19941	22444	16274	16298	22039	22039					-0.006436650333284888
INVAPWYW	8	Unmodified	_INVAPWYW_					0	0	0		ENST00000375499.7_1_1:17359611-17371331:-|nuORF	ENST00000375499.7_1_1:17359611-17371331:-|nuORF	ENST00000375499.7_1_1:17359611-17371331:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	524.7639770507812	2	524.766178	1047.5178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.6	1	128.14	127.64	128.64	-1.4565								0	0	0	0.30129	1	12414	12414		28.254	1.4582	1				19942	11057	16275	16299	22040	22040					-0.004056073772972013
INVCRPLN	8	Carbamidomethyl (C)	_INVC(Carbamidomethyl (C))RPLN_	INVC(1)RPLN		INVC(46)RPLN		0	1	0		IGF2R|p.S1818Ifs*11|1|0.13|ENSG00000197081|chr6:160078335-160078336|-/AT|frameshift_variant;IGF2R|p.S1819Kfs*18|1|0.12|ENSG00000197081|chr6:160078337-160078338|-/CAAGGCTCATCTGACCCCTAGGAGTT|frameshift_variant;IGF2R|p.A2191Ffs*31|1|0.04|ENSG00000197081|chr6:160090018-160090019|-/TTTTTAGTAGAGACGGGGTTTCACCATGTTG|frameshift_variant;ENSG00000197081|ENST00000356956|IGF2R;IGF2R|p.S2210Ffs*137|1|0.18|ENSG00000197081|chr6:160090076-160090077|-/TTTGTCCCACCCGAGGTGTTCAAGCAGCCTGG|frameshift_variant	IGF2R|p.S1818Ifs*11|1|0.13|ENSG00000197081|chr6:160078335-160078336|-/AT|frameshift_variant;IGF2R|p.S2210Ffs*137|1|0.18|ENSG00000197081|chr6:160090076-160090077|-/TTTGTCCCACCCGAGGTGTTCAAGCAGCCTGG|frameshift_variant	IGF2R|p.S1818Ifs*11|1|0.13|ENSG00000197081|chr6:160078335-160078336|-/AT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3240661621094	2	493.266019	984.517485	-0.36896	-0.000182	-0.5238	-0.00025837	-0.89276	-0.00044037	493.2669549378857	79.021	0.64045	76.681	76.162	76.802	-2.3399					18	12	2	0	0	0	0.028476	1	4200	4200		45.952	25.47	1	34325			19943	14499;14500	16276	16300	22041	22041	164				0.0246064963120034
INVFLAVISTT	11	Unmodified	_INVFLAVISTT_					0	0	0			REV__tr|A0A7D6ZI58|A0A7D6ZI58_9CLOTCarbohydrateABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02955PE=3SV=1	REV__tr|A0A7D6ZI58|A0A7D6ZI58_9CLOTCarbohydrateABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02955PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3430786132812	2	589.344989	1176.67542	-3.0463	-0.0017953	-0.38122	-0.00022467	-3.4276	-0.00202	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.71789	2	14938	14938;15004		23.523	4.4192	1	272220	+		19944	32048	16277	16301	22042;22043	22042					0.09415427371436635
INVKEHLAK	9	Unmodified	_INVKEHLAK_					0	0	0			REV__ENSG00000184702|ENST00000455784|SEPTIN5	REV__ENSG00000184702|ENST00000455784|SEPTIN5	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.3728637695312	2	526.316566	1050.61858	-0.26709	-0.00014057	-0.9874	-0.00051969	-1.2545	-0.00066026	526.3157889001108	56.828	0.39127	56.828	56.702	57.093	0					13	8	2	0	0	0	0.027462	1	4766	4766		54.776	5.2403	1	143480	+		19945	22447	16278	16302	22044	22044					0.09529424605557324
INVLFRIP	8	Unmodified	_INVLFRIP_					0	0	0		L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|126|2|anti-sense	L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|126|2|anti-sense	L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|126|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.30511474609375	2	486.30547	970.596387	0.016353	7.9527E-06	-0.39252	-0.00019088	-0.37617	-0.00018293	486.3051966587704	121.94	2.2082	120.59	120.11	122.32	-1.3479					102	43	4	0	0	0	0.73626	1	11508	11508		33.516	5.2613	1	873390			19946	14582	16279	16303	22045	22045					0.10991244927799926
INVLKDIISY	10	Unmodified	_INVLKDIISY_					0	0	0			REV__nc|ENSG00000049130|P21583-3|KITLG	REV__nc|ENSG00000049130|P21583-3|KITLG	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3427124023438	2	589.344989	1176.67542	-5.1334	-0.0030254	1.6192	0.00095427	-3.5142	-0.0020711	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.70152	1	12540	12540		30.318	6.795	1	589610	+		19947	16674	16280	16304	22046	22046					0.09415427371436635
INVLKVSP	8	Unmodified	_INVLKVSP_					0	0	0		ENST00000486155.1_1_6:35928714-35992326:-|nuORF;SLC26A8|p.G738Afs*5|1|0.04|ENSG00000112053|chr6:35955171-35955172|-/GACACATG|frameshift_variant;SLC26A8|p.R737Gfs*33|1|0.02|ENSG00000112053|chr6:35955174-35955175|CG/-|frameshift_variant;nc|ENSG00000112053|Q96RN1-4|SLC26A8;nc|ENSG00000112053|Q96RN1-2|SLC26A8;ENSG00000112053|ENST00000490799|SLC26A8	ENST00000486155.1_1_6:35928714-35992326:-|nuORF	ENST00000486155.1_1_6:35928714-35992326:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	434.28759765625	2	435.276378	868.538203	-0.60222	-0.00026213	1.9465	0.00084725	1.3442	0.00058512	435.27700695651544	84.131	1.1782	82.585	82.172	83.351	-1.5462					33	22	2	0	0	0	0.028476	1	7311	7311		38.806	15.764	1	23595			19948	2873	16281	16305	22047	22047					0.09867563282523406
INVLMGPDLL	10	Unmodified	_INVLMGPDLL_					0	0	0			REV__ENST00000475707.5_1_3:15045421-15079667:+|nuORF	REV__ENST00000475707.5_1_3:15045421-15079667:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.77734375	2	542.807185	1083.59982	1.3247	0.00071908	-3.0146	-0.0016364	-1.6899	-0.00091727	542.8054659670531	79.207	0.71461	79.207	78.911	79.625	0					34	17	3	0	0	0	0.026464	1	8100	8100		79.713	32.055	1	1303600	+		19949	22007	16282	16306	22048	22048					0.06136126919500384
INVSRQQVE	9	Unmodified	_INVSRQQVE_					0	0	0		nc|ENSG00000113763|Q6ZN44-2|UNC5A;nc|ENSG00000113763|Q6ZN44-3|UNC5A;ENSG00000113763|ENST00000329542|UNC5A	nc|ENSG00000113763|Q6ZN44-2|UNC5A	nc|ENSG00000113763|Q6ZN44-2|UNC5A	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3411254882812	2	536.790912	1071.56727	-0.71578	-0.00038422	0.82712	0.00044399	0.11134	5.9766E-05	536.7914694947947	39.843	0.4768	39.843	39.63	40.106	0					20	10	3	0	0	0	0.027462	1	2369	2369		24.519	3.5723	1	157060			19950	2994	16283	16307	22049	22049					0.03435055840873247
INVSRQQVE	9	Unmodified	_INVSRQQVE_					0	0	0		nc|ENSG00000113763|Q6ZN44-2|UNC5A;nc|ENSG00000113763|Q6ZN44-3|UNC5A;ENSG00000113763|ENST00000329542|UNC5A	nc|ENSG00000113763|Q6ZN44-2|UNC5A	nc|ENSG00000113763|Q6ZN44-2|UNC5A	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	536.790912	1071.56727	-0.092653	-4.9735E-05	4.3659	0.0023436	4.2732	0.0022938	536.794524516997	42.838	1.5326	40.128	39.621	41.153	-2.7097	0.1427	0.0017846	NaN	58.23	90	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170530			19951	2994	16283	16307							0.03435055840873247
INVTMEDMI	9	Unmodified	_INVTMEDMI_					0	0	0		tr|A0A553SL89|A0A553SL89_NIACI3-methyl-2-oxobutanoatehydroxymethyltransferaseOS=NialliacirculansOX=1397GN=panBPE=3SV=1	tr|A0A553SL89|A0A553SL89_NIACI3-methyl-2-oxobutanoatehydroxymethyltransferaseOS=NialliacirculansOX=1397GN=panBPE=3SV=1	tr|A0A553SL89|A0A553SL89_NIACI3-methyl-2-oxobutanoatehydroxymethyltransferaseOS=NialliacirculansOX=1397GN=panBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.2381591796875	2	533.251385	1064.48822	-0.56746	-0.0003026	-2.9651	-0.0015812	-3.5326	-0.0018838	533.2495482444995	53.655	0.21038	53.655	53.564	53.774	0					6	4	2	0	0	0	0.027462	1	4276	4276		21.96	3.6355	1	415690			19952	33695	16284	16308	22050	22050					-0.041446754999469704
INVVPFGIWQ	10	Unmodified	_INVVPFGIWQ_					0	0	0		nc|ENSG00000168405|Q9Y471|CMAHP;nc|ENSG00000168405|Q9Y471-4|CMAHP	nc|ENSG00000168405|Q9Y471|CMAHP	nc|ENSG00000168405|Q9Y471|CMAHP	MULTI-MSMS	OvCa9_classI_Rep3	3	586.8236083984375	2	586.826766	1171.63898	-5.6686	-0.0033265	0.20936	0.00012286	-5.4592	-0.0032036	586.8267226357335	149.07	1.5069	148.12	147.65	149.16	-0.9512					81	29	4	0	0	0	0.78463	1	12591	12591		20.947	0	1	213470			19953	15166	16285	16309	22051	22051					0.06002595265385935
INWDDLIN	8	Unmodified	_INWDDLIN_					0	0	0		ENSG00000118515|ENST00000367858|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-4|SGK1;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;ENST00000474427.6_1_6:134491831-134492053:-|nuORF	ENSG00000118515|ENST00000367858|SGK1	ENSG00000118515|ENST00000367858|SGK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.310302734375	2	501.748182	1001.48181	-0.42406	-0.00021277	1.3979	0.00070139	0.97384	0.00048862	502.25080434168245	47.954	0.21635	47.954	47.768	47.984	0					7	4	2	0	0	0	0.028476	1	3464	3464		31.955	0	1	193170			19954	3313	16286	16310	22052	22052					-0.018871093448069587
INYLLRLKI	9	Unmodified	_INYLLRLKI_					0	0	0		ENST00000333957.8_1_12:22602475-22602664:-|nuORF	ENST00000333957.8_1_12:22602475-22602664:-|nuORF	ENST00000333957.8_1_12:22602475-22602664:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	573.876953125	2	573.373884	1144.73321	1.2835	0.00073595	-0.10761	-6.1699E-05	1.1759	0.00067425	573.3736940622971	102.74	4.5051	102.74	102.17	106.67	0					254	104	3	0	0	0	0.12365	2	11657	11477;11657		90.777	21.99	1	5667200			19955	10473	16287	16311	22053;22054	22054					0.16663734087501325
INYMWLFI	8	Unmodified	_INYMWLFI_					0	0	0			REV__ENST00000321027.7_3_2:75929435-75937941:-|nuORF	REV__ENST00000321027.7_3_2:75929435-75937941:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.7545776367188	2	550.285889	1098.55722	0.30204	0.00016621	1.619	0.0008909	1.921	0.0010571	550.2856618310253	161.39	0.76099	161.39	161.11	161.87	0					28	14	3	0	0	0	0.028476	1	18969	18969		28.254	9.1508	1	67847	+		19956	24445	16288	16312	22055	22055					0.011887765819210472
INYRNEPLQ	9	Unmodified	_INYRNEPLQ_					0	0	0		tr|A0A553SSI2|A0A553SSI2_NIACICopperoxidaseOS=NialliacirculansOX=1397GN=CEQ21_03155PE=4SV=1	tr|A0A553SSI2|A0A553SSI2_NIACICopperoxidaseOS=NialliacirculansOX=1397GN=CEQ21_03155PE=4SV=1	tr|A0A553SSI2|A0A553SSI2_NIACICopperoxidaseOS=NialliacirculansOX=1397GN=CEQ21_03155PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.3756713867188	2	573.798737	1145.58292	2.4392	0.0013996	3.694	0.0021196	6.1332	0.0035192	573.8009659870035	102.73	0.51002	102.73	102.5	103.01	0					15	11	2	0	0	0	0.027402	1	11454	11454		76.774	16.656	1	423940			19957	34377	16289	16313	22056	22056					0.01595342357904883
IPAASPQTGR	10	Unmodified	_IPAASPQTGR_					0	0	0		tr|A0A553SPG8|A0A553SPG8_NIACIPeptidaseC39OS=NialliacirculansOX=1397GN=CEQ21_26300PE=4SV=1	tr|A0A553SPG8|A0A553SPG8_NIACIPeptidaseC39OS=NialliacirculansOX=1397GN=CEQ21_26300PE=4SV=1	tr|A0A553SPG8|A0A553SPG8_NIACIPeptidaseC39OS=NialliacirculansOX=1397GN=CEQ21_26300PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.3133239746094	2	499.274898	996.535243	1.9866	0.00099185	1.1799	0.00058911	3.1665	0.001581	499.2748571739808	85.736	0.32725	85.736	85.585	85.912	0					12	7	2	0	0	0	0.026802	1	9013	9013		26.693	13.734	1	208590			19958	34042	16290	16314	22057	22057					0.03683688157718734
IPAEGRVAL	9	Unmodified	_IPAEGRVAL_					0	0	0		ENSG00000137106|ENST00000318158|GRHPR;ENST00000377824.8_1_9:37422741-37431094:+|nuORF;GRHPR|p.K95Sfs*13|1|0.07|ENSG00000137106|chr9:37425990-37425990|A/-|frameshift_variant	ENSG00000137106|ENST00000318158|GRHPR	ENSG00000137106|ENST00000318158|GRHPR	MULTI-MSMS	OvCa9_classI_Rep2	2	463.2772521972656	2	463.276909	924.539266	-0.62606	-0.00029004	0.43607	0.00020202	-0.18999	-8.8016E-05	463.27705603624554	74.992	1.8677	73.021	72.376	74.244	-1.9711					93	35	4	0	0	0	0.21231	1	6155	6155		74.255	2.3776	1	495750			19959	4559	16291	16315	22058	22058					0.07397777651419801
IPAEGRVAL	9	Unmodified	_IPAEGRVAL_					0	0	0		ENSG00000137106|ENST00000318158|GRHPR;ENST00000377824.8_1_9:37422741-37431094:+|nuORF;GRHPR|p.K95Sfs*13|1|0.07|ENSG00000137106|chr9:37425990-37425990|A/-|frameshift_variant	ENSG00000137106|ENST00000318158|GRHPR	ENSG00000137106|ENST00000318158|GRHPR	MULTI-MSMS	OvCa9_classI_Rep3	3	463.27813720703125	2	463.276909	924.539266	-0.58518	-0.0002711	0.43027	0.00019933	-0.15492	-7.1769E-05	463.27703196327946	74.974	2.0641	72.564	72.192	74.256	-2.4106					88	40	4	0	0	0	0.068524	1	3758	3758		108.09	5.3142	1	616420			19960	4559	16291	16315	22059	22059					0.07397777651419801
IPAFSSRAL	9	Unmodified	_IPAFSSRAL_					0	0	0		ENST00000469726.5_1_1:17942561-18023872:+|nuORF;nc|ENSG00000074964|Q9HCE6-4|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-5|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-3|ARHGEF10L;nc|ENSG00000074964|Q9HCE6-2|ARHGEF10L;ENSG00000074964|ENST00000361221|ARHGEF10L	ENST00000469726.5_1_1:17942561-18023872:+|nuORF	ENST00000469726.5_1_1:17942561-18023872:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	481.2782287597656	2	481.276909	960.539266	-0.75286	-0.00036233	1.0325	0.00049691	0.27962	0.00013458	481.2775599086682	77.06	0.83206	74.688	74.453	75.285	-2.3715					51	15	4	0	0	0	0.21231	2	3999	3999;4015		74.255	2.3776	1	819190			19961	12349	16292	16316	22060;22061	22060					0.05741777651417124
IPAGSVHKF	9	Unmodified	_IPAGSVHKF_					0	0	0		XIRP1|p.A930Pfs*4|1|0.1|ENSG00000168334|chr3:39186658-39186658|C/-|frameshift_variant;nc|ENSG00000168334|Q702N8-2|XIRP1;XIRP1|p.G1456Efs*25|1|0.07|ENSG00000168334|chr3:39185079-39185080|-/TGGGTGATGTCCTT|frameshift_variant;ENSG00000168334|ENST00000340369|XIRP1	XIRP1|p.A930Pfs*4|1|0.1|ENSG00000168334|chr3:39186658-39186658|C/-|frameshift_variant	XIRP1|p.A930Pfs*4|1|0.1|ENSG00000168334|chr3:39186658-39186658|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.29815673828125	2	478.271627	954.528701	-1.3886	-0.00066411	-2.8561	-0.001366	-4.2447	-0.0020301	478.27019835136235	52.183	1.4338	49.37	48.996	50.43	-2.8129					64	28	3	0	0	0	0.027433	1	3466	3466		57.811	8.3697	1	296780			19962	6893	16293	16317	22062	22062					0.0496179499699565
IPAHVLIKES	10	Unmodified	_IPAHVLIKES_					0	0	0		ENST00000336695.4_1_20:34287595-34288899:+|nuORF	ENST00000336695.4_1_20:34287595-34288899:+|nuORF	ENST00000336695.4_1_20:34287595-34288899:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8299560546875	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.7759	1	11897	11897		21.96	2.8564	1	308210			19963	10512	16294	16318	22063	22063					0.10094577919812764
IPAKAKGCRV	10	Unmodified	_IPAKAKGCRV_					0	0	0			REV__MRPS23|p.Y53C|1|0.27|ENSG00000181610|chr17:57849297-57849297|T/C|missense_variant	REV__MRPS23|p.Y53C|1|0.27|ENSG00000181610|chr17:57849297-57849297|T/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	521.812744140625	2	521.813136	1041.61172	0.66684	0.00034797	-0.83002	-0.00043311	-0.16318	-8.5148E-05	521.8125550496435	68.201	4.7433	65.386	65.063	69.806	-2.8144					153	94	3	0	0	0	0.71192	1	2977	2977		29.15	2.4566	1	529900	+		19964	28680	16295	16319	22064	22064					0.0925778845332843
IPAKFVAPL	9	Unmodified	_IPAKFVAPL_					0	0	0			REV__ENSG00000174444|ENST00000307961|RPL4	REV__ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	OvCa9_classI_Rep2	2	478.29815673828125	2	478.302396	954.590239	-1.3958	-0.0006676	-3.4624	-0.0016561	-4.8582	-0.0023237	478.300797234432	52.175	1.9776	49.362	48.552	50.53	-2.8129					86	39	4	0	0	0	0.32337	1	3466	3466		60.294	7.9948	1	346960	+		19965	21832	16296	16320	22065	22065					0.11112726696285335
IPAKKAGSALL	11	Unmodified	_IPAKKAGSALL_					0	0	0			REV__tr|A0A553SFE4|A0A553SFE4_NIACIGlucosamine-6-phosphatedeaminaseOS=NialliacirculansOX=1397GN=nagBPE=3SV=1	REV__tr|A0A553SFE4|A0A553SFE4_NIACIGlucosamine-6-phosphatedeaminaseOS=NialliacirculansOX=1397GN=nagBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.2578735351562	2	534.842416	1067.67028	-0.96609	-0.00051671	0.30499	0.00016312	-0.6611	-0.00035358	534.8424946462751	106.73	1.1824	106.43	106.13	107.31	-0.30836					51	23	3	0	0	0	0.025496	1	10032	10032		32.812	0	1	105470	+		19966	29568	16297	16321	22066	22066					0.1391516829946795
IPAKLHNSL	9	Unmodified	_IPAKLHNSL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OvCa9_classI_Rep2	2	496.7974548339844	2	496.798009	991.581465	-1.0072	-0.00050037	0.57629	0.0002863	-0.43091	-0.00021407	496.7982071180884	55.049	2.4852	52.235	51.325	53.81	-2.8139					127	49	5	0	0	0	0.014964	5	3804	3799;3804;3810;3816;3822		153.04	44.948	1	630500			19967	3119	16298	16322	22067;22068;22069;22070;22071	22068					0.0853375305979398
IPAKLHNSL	9	Unmodified	_IPAKLHNSL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.7991943359375	2	496.798009	991.581465	-0.89558	-0.00044492	0.085398	4.2426E-05	-0.81018	-0.0004025	496.79801555523693	55.48	2.2332	52.185	51.751	53.984	-3.2944					123	43	4	0	0	0	0.018335	3	3494	3485;3494;3506		148.99	44.24	1	1826800			19968	3119	16298	16322	22072;22073;22074	22073					0.0853375305979398
IPAKMFRR	8	Unmodified	_IPAKMFRR_					0	0	0		ENST00000426778.5_1_2:128015174-128051559:-|nuORF;ENSG00000163161|ENST00000285398|ERCC3	ENST00000426778.5_1_2:128015174-128051559:-|nuORF	ENST00000426778.5_1_2:128015174-128051559:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8038330078125	2	509.802571	1017.59059	-0.41042	-0.00020923	2.7628	0.0014085	2.3524	0.0011993	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.75915	1	13387	13387		20.482	2.1574	1	150140			19969	6274	16299	16323	22075	22075					0.08249823144490165
IPAKPPVSF	9	Unmodified	_IPAKPPVSF_					0	0	0		nc|ENSG00000153066|Q6PKC3-3|TXNDC11;TXNDC11|p.Q507Nfs*12|1|0.05|ENSG00000153066|chr16:11691752-11691753|-/TT|frameshift_variant;ENSG00000153066|ENST00000283033|TXNDC11;nc|ENSG00000153066|Q6PKC3|TXNDC11	nc|ENSG00000153066|Q6PKC3-3|TXNDC11	nc|ENSG00000153066|Q6PKC3-3|TXNDC11	MULTI-MSMS	OvCa9_classI_Rep2	2	478.2833251953125	2	478.284203	954.553853	1.5389	0.00073601	-2.1722	-0.0010389	-0.63332	-0.00030291	478.28282395372906	88.975	3.0051	87.607	86.351	89.356	-1.3676					140	60	4	0	0	0	0.10363	6	7829	7801;7806;7811;7817;7823;7829		96.19	32.884	1	519510			19970	5658	16300	16324	22076;22077;22078;22079;22080;22081	22081					0.07475849799573098
IPAKPPVSF	9	Unmodified	_IPAKPPVSF_					0	0	0		nc|ENSG00000153066|Q6PKC3-3|TXNDC11;TXNDC11|p.Q507Nfs*12|1|0.05|ENSG00000153066|chr16:11691752-11691753|-/TT|frameshift_variant;ENSG00000153066|ENST00000283033|TXNDC11;nc|ENSG00000153066|Q6PKC3|TXNDC11	nc|ENSG00000153066|Q6PKC3-3|TXNDC11	nc|ENSG00000153066|Q6PKC3-3|TXNDC11	MULTI-MSMS	OvCa9_classI_Rep3	3	478.28564453125	2	478.284203	954.553853	0.011451	5.4769E-06	0.20277	9.6981E-05	0.21422	0.00010246	478.283881890252	89.712	2.3286	87.632	86.896	89.225	-2.0805					128	45	4	0	0	0	0.074342	6	5531	5521;5526;5531;5537;5544;5551		104.75	36.262	1	763580			19971	5658	16300	16324	22082;22083;22084;22085;22086;22087	22084					0.07475849799573098
IPAKPPVSF	9	Unmodified	_IPAKPPVSF_					0	0	0		nc|ENSG00000153066|Q6PKC3-3|TXNDC11;TXNDC11|p.Q507Nfs*12|1|0.05|ENSG00000153066|chr16:11691752-11691753|-/TT|frameshift_variant;ENSG00000153066|ENST00000283033|TXNDC11;nc|ENSG00000153066|Q6PKC3|TXNDC11	nc|ENSG00000153066|Q6PKC3-3|TXNDC11	nc|ENSG00000153066|Q6PKC3-3|TXNDC11	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.28582763671875	2	478.284203	954.553853	0.61326	0.00029331	-1.4129	-0.00067578	-0.79967	-0.00038247	478.28325345358564	90.074	2.7646	87.499	86.314	89.079	-2.575					139	54	4	0	0	0	0.12515	5	7746	7724;7735;7746;7758;7771		90.37	27.476	1	623510			19972	5658	16300	16324	22088;22089;22090;22091;22092	22090					0.07475849799573098
IPAKRIGVPE	10	Unmodified	_IPAKRIGVPE_					0	0	0		nc|ENSG00000115425|Q9BY49-2|PECR;ENSG00000115425|ENST00000265322|PECR	nc|ENSG00000115425|Q9BY49-2|PECR	nc|ENSG00000115425|Q9BY49-2|PECR	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.3040771484375	2	540.332216	1078.64988	1.7152	0.00092676	-0.44061	-0.00023808	1.2745	0.00068868	540.3320796314498	111.05	0.57517	111.05	110.76	111.33	0					28	12	3	0	0	0	0.026994	1	12638	12638		25.574	1.3713	1	227140			19973	3098	16301	16325	22093	22093					0.11369997639690155
IPAKRIGVPE	10	Unmodified	_IPAKRIGVPE_					0	0	0		nc|ENSG00000115425|Q9BY49-2|PECR;ENSG00000115425|ENST00000265322|PECR	nc|ENSG00000115425|Q9BY49-2|PECR	nc|ENSG00000115425|Q9BY49-2|PECR	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3284301757812	2	540.332216	1078.64988	-1.5762	-0.00085169	-2.2598	-0.001221	-3.836	-0.0020727	540.3309156564876	138.68	4.2384	138.45	137.13	141.37	-0.22697					227	86	3	0	0	0	0.66721	1	13738	13738		34.173	10.65	1	66382			19974	3098	16301	16325	22094	22094					0.11369997639690155
IPALKSVN	8	Unmodified	_IPALKSVN_					0	0	0			REV__tr|A0A7D6VZ48|A0A7D6VZ48_9CLOTGlucosaminidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18685PE=4SV=1	REV__tr|A0A7D6VZ48|A0A7D6VZ48_9CLOTGlucosaminidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18685PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	421.25970458984375	2	421.260728	840.506903	-0.16203	-6.8257E-05	-2.9992	-0.0012634	-3.1612	-0.0013317	421.2593246005652	135.39	1.3287	134.28	133.92	135.24	-1.1076					52	26	3	0	0	0	0.7549	1	10949	10949		24.203	3.2558	1	253370	+		19975	31831	16302	16326	22095	22095					0.08026990248424681
IPALRDISI	9	Unmodified	_IPALRDISI_					0	0	0		nc|ENSG00000185808|P57054-3|PIGP;ENSG00000185808|ENST00000360525|PIGP;nc|ENSG00000185808|P57054|PIGP	nc|ENSG00000185808|P57054-3|PIGP	nc|ENSG00000185808|P57054-3|PIGP	MULTI-MSMS	OvCa9_classI_Rep2	2	499.30548095703125	2	499.305667	996.596781	-0.15544	-7.7614E-05	0.06889	3.4397E-05	-0.086553	-4.3217E-05	499.3055389013854	109.26	1.4344	109.09	108.67	110.11	-0.17237					82	28	4	0	0	0	0.075543	4	10258	10255;10258;10264;10277		104.06	16.36	1	327050			19976	8286	16303	16327	22096;22097;22098;22099	22097					0.09834619856997051
IPALRDISI	9	Unmodified	_IPALRDISI_					0	0	0		nc|ENSG00000185808|P57054-3|PIGP;ENSG00000185808|ENST00000360525|PIGP;nc|ENSG00000185808|P57054|PIGP	nc|ENSG00000185808|P57054-3|PIGP	nc|ENSG00000185808|P57054-3|PIGP	MULTI-MSMS	OvCa9_classI_Rep3	3	499.30535888671875	2	499.305667	996.596781	-0.016923	-8.4497E-06	-0.10289	-5.1372E-05	-0.11981	-5.9822E-05	499.30548168431477	110.18	1.3469	109.04	108.66	110.01	-1.1444					68	25	4	0	0	0	0.084918	3	7955	7944;7955;7962		101.25	13.123	1	319080			19977	8286	16303	16327	22100;22101;22102	22101					0.09834619856997051
IPALRDISI	9	Unmodified	_IPALRDISI_					0	0	0		nc|ENSG00000185808|P57054-3|PIGP;ENSG00000185808|ENST00000360525|PIGP;nc|ENSG00000185808|P57054|PIGP	nc|ENSG00000185808|P57054-3|PIGP	nc|ENSG00000185808|P57054-3|PIGP	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.3053283691406	2	499.305667	996.596781	0.45759	0.00022848	-0.59431	-0.00029674	-0.13672	-6.8264E-05	499.30524303474647	110.66	1.5258	109.06	108.6	110.12	-1.6011					71	28	3	0	0	0	0.070405	2	10185	10185;10197		107.01	8.3781	1	385620			19978	8286	16303	16327	22103;22104	22103					0.09834619856997051
IPALRRLE	8	Unmodified	_IPALRRLE_					0	0	0			REV__nc|ENSG00000067225|P14618-3|PKM	REV__nc|ENSG00000067225|P14618-3|PKM	MULTI-MSMS	OvCa9_classI_Rep2	2	484.3069763183594	2	484.306001	966.597449	0.93371	0.0004522	3.3614	0.0016279	4.2951	0.0020801	484.3074830204417	129.68	1.0861	129.46	129.12	130.21	-0.22696					46	21	4	0	0	0	0.71369	1	12749	12749		40.573	0	1	157450	+		19979	16832	16304	16328	22105	22105					0.11281459296696994
IPALRRLE	8	Unmodified	_IPALRRLE_					0	0	0			REV__nc|ENSG00000067225|P14618-3|PKM	REV__nc|ENSG00000067225|P14618-3|PKM	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.3081359863281	2	484.306001	966.597449	3.7965	0.0018386	0.47705	0.00023104	4.2735	0.0020697	484.3060586662709	131.36	1.0726	129.88	129.64	130.72	-1.4779					54	21	4	0	0	0	0.6962	1	12639	12639		44.117	6.9577	1	95427	+		19980	16832	16304	16328	22106	22106					0.11281459296696994
IPALRRLE	8	Unmodified	_IPALRRLE_					0	0	0			REV__nc|ENSG00000067225|P14618-3|PKM	REV__nc|ENSG00000067225|P14618-3|PKM	MULTI-MATCH	OvCa9_classI_Rep3	3		2	484.306001	966.597449	-0.088682	-4.2949E-05	4.1325	0.0020014	4.0438	0.0019584	484.3077980003177	131.04	1.1269	129.92	129.66	130.79	-1.1249	0.019168	0.0014745	NaN	44.117	51	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74545	+		19981	16832	16304	16328							0.11281459296696994
IPAPKRGEIV	10	Unmodified	_IPAPKRGEIV_					0	0	0		nc|ENSG00000164904|P49419-4|ALDH7A1;nc|ENSG00000164904|P49419-2|ALDH7A1;ENSG00000164904|ENST00000409134|ALDH7A1	nc|ENSG00000164904|P49419-4|ALDH7A1	nc|ENSG00000164904|P49419-4|ALDH7A1	MULTI-MSMS	OvCa99_classI_Rep5	1	540.8349609375	2	540.332216	1078.64988	1.2796	0.00069143	4.0353	0.0021804	5.3149	0.0028718	540.3343358581989	130.98	2.9694	130.98	130.29	133.26	0					166	62	5	0	0	0	0.49558	1	15349	15349		54.776	4.7518	1	5224400			19982	6498	16305	16329	22107	22107					0.11369997639667417
IPAQSLTLS	9	Unmodified	_IPAQSLTLS_					0	0	0		nc|ENSG00000110171|O75382-3|TRIM3;nc|ENSG00000110171|O75382-2|TRIM3;ENSG00000110171|ENST00000345851|TRIM3;ENST00000536344.5_1_11:6479060-6495064:-|nuORF	nc|ENSG00000110171|O75382-3|TRIM3	nc|ENSG00000110171|O75382-3|TRIM3	MSMS	OvCa9_classI_Rep4_	4	465.2709655761719	2	465.26875	928.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.391	1	57.961	57.461	58.461	-3.43								0	0	0	0.11949	1	4205	4205		68.485	2.6815	1				19983	2760	16306	16330	22108	22108					0.05582651694669494
IPARFAGVL	9	Unmodified	_IPARFAGVL_					0	0	0		VWF|p.D2509Gfs*24|1|0.03|ENSG00000110799|chr12:5971621-5971622|-/C|frameshift_variant;ENSG00000110799|ENST00000261405|VWF;VWF|p.C321Ffs*136|1|0.03|ENSG00000110799|chr12:6073654-6073654|C/-|frameshift_variant;VWF|p.K704Afs*38|1|0.07|ENSG00000110799|chr12:6052620-6052621|-/CA|frameshift_variant	VWF|p.D2509Gfs*24|1|0.03|ENSG00000110799|chr12:5971621-5971622|-/C|frameshift_variant	VWF|p.D2509Gfs*24|1|0.03|ENSG00000110799|chr12:5971621-5971622|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	472.289306640625	2	472.28982	942.565087	-0.46632	-0.00022024	-0.40527	-0.00019141	-0.87159	-0.00041164	472.28947149768123	98.344	1.833	97.451	97.168	99.001	-0.89305					84	36	4	0	0	0	0.071436	3	8933	8922;8933;8940		106.42	33.034	1	571750			19984	2794	16307	16331	22109;22110;22111	22110					0.09150671893701201
IPARFAGVL	9	Unmodified	_IPARFAGVL_					0	0	0		VWF|p.D2509Gfs*24|1|0.03|ENSG00000110799|chr12:5971621-5971622|-/C|frameshift_variant;ENSG00000110799|ENST00000261405|VWF;VWF|p.C321Ffs*136|1|0.03|ENSG00000110799|chr12:6073654-6073654|C/-|frameshift_variant;VWF|p.K704Afs*38|1|0.07|ENSG00000110799|chr12:6052620-6052621|-/CA|frameshift_variant	VWF|p.D2509Gfs*24|1|0.03|ENSG00000110799|chr12:5971621-5971622|-/C|frameshift_variant	VWF|p.D2509Gfs*24|1|0.03|ENSG00000110799|chr12:5971621-5971622|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	472.2908630371094	2	472.28982	942.565087	0.29325	0.0001385	-0.73873	-0.0003489	-0.44549	-0.0002104	472.2893679922423	99.284	1.9013	97.599	97.113	99.014	-1.685					79	37	4	0	0	0	0.31747	1	6680	6680		60.972	10.947	1	778780			19985	2794	16307	16331	22112	22112					0.09150671893701201
IPARFAGVL	9	Unmodified	_IPARFAGVL_					0	0	0		VWF|p.D2509Gfs*24|1|0.03|ENSG00000110799|chr12:5971621-5971622|-/C|frameshift_variant;ENSG00000110799|ENST00000261405|VWF;VWF|p.C321Ffs*136|1|0.03|ENSG00000110799|chr12:6073654-6073654|C/-|frameshift_variant;VWF|p.K704Afs*38|1|0.07|ENSG00000110799|chr12:6052620-6052621|-/CA|frameshift_variant	VWF|p.D2509Gfs*24|1|0.03|ENSG00000110799|chr12:5971621-5971622|-/C|frameshift_variant	VWF|p.D2509Gfs*24|1|0.03|ENSG00000110799|chr12:5971621-5971622|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.2900390625	2	472.28982	942.565087	-0.19425	-9.1743E-05	-0.47496	-0.00022432	-0.66921	-0.00031606	472.2894731910647	99.885	1.522	97.559	97.212	98.734	-2.3253					67	29	3	0	0	0	0.22961	3	8913	8913;8926;8939		71.296	13.484	1	675740			19986	2794	16307	16331	22113;22114;22115	22113					0.09150671893701201
IPASIVNPLC	10	Unmodified	_IPASIVNPLC_					0	0	0			REV__ENST00000529121.2_1_11:61101092-61101212:+|nuORF	REV__ENST00000529121.2_1_11:61101092-61101212:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	513.7879028320312	2	513.786253	1025.55795	-0.70395	-0.00036168	4.0085	0.0020595	3.3046	0.0016979	513.7882058006563	39.281	1.982	36.571	35.964	37.946	-2.7097					102	39	5	0	0	0	0.56767	1	1924	1924		45.952	1.8352	1	512530	+		19987	27185	16308	16332	22116	22116					0.04619571230955444
IPAVGRELA	9	Unmodified	_IPAVGRELA_					0	0	0			REV__ENST00000589854.1_1_19:5790042-5791152:-|nuORF	REV__ENST00000589854.1_1_19:5790042-5791152:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	463.2778015136719	2	463.276909	924.539266	-0.58518	-0.0002711	0.43027	0.00019933	-0.15492	-7.1769E-05	463.27703196327946	74.974	2.0641	72.564	72.192	74.256	-2.4106					88	40	4	0	0	0	0.14998	1	3777	3777		84.916	10.399	1	616420	+		19988	19763	16309	16333	22117	22117					0.07397777651408433
IPAVGRELA	9	Unmodified	_IPAVGRELA_					0	0	0			REV__ENST00000589854.1_1_19:5790042-5791152:-|nuORF	REV__ENST00000589854.1_1_19:5790042-5791152:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.2783203125	2	463.276909	924.539266	-0.39295	-0.00018205	-0.13007	-6.0258E-05	-0.52302	-0.0002423	463.27682376212437	75.898	2.0127	72.959	72.497	74.51	-2.9389					92	41	4	0	0	0	0.19758	1	6021	6021		76.774	2.5191	1	1343400	+		19989	19763	16309	16333	22118	22118					0.07397777651408433
IPAWLQGTLL	10	Unmodified	_IPAWLQGTLL_					0	0	0		ENSG00000135697|ENST00000258168|BCO1;BCO1|p.K195Tfs*7|1|0.34|ENSG00000135697|chr16:81264751-81264752|-/CGAT|frameshift_variant;BCO1|p.Y196Pfs*11|1|0.33|ENSG00000135697|chr16:81264753-81264754|-/CCACAGAAGCACACCAGCTCCCTAAC|frameshift_variant	ENSG00000135697|ENST00000258168|BCO1	ENSG00000135697|ENST00000258168|BCO1	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.2630615234375	2	556.329142	1110.64373	0.76675	0.00042657	-0.71229	-0.00039627	0.054466	3.0301E-05	556.3283356087121	72.224	0.99393	72.224	72	72.994	0					52	24	4	0	0	0	0.026822	1	7073	7073		30.504	3.8107	1	3280600			19990	4402	16310	16334	22119	22119					0.09283479408168205
IPCAISWLF	9	Unmodified	_IPCAISWLF_					0	0	0		ENSG00000162849|ENST00000407071|KIF26B;nc|ENSG00000162849|Q2KJY2-2|KIF26B;KIF26B-SMYD3|3|fusion	ENSG00000162849|ENST00000407071|KIF26B	ENSG00000162849|ENST00000407071|KIF26B	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.7991943359375	2	525.278063	1048.54157	1.1031	0.00057944	-2.182	-0.0011461	-1.0789	-0.0005667	525.2770231802446	129.05	0.54477	128.83	128.62	129.17	-0.22697					15	10	2	0	0	0	0.027462	1	12666	12666		33.516	0	1	20307			19991	6240	16311	16335	22120	22120					0.019244900648573093
IPCLEVDVN	9	Unmodified	_IPCLEVDVN_					0	0	0		ENST00000512908.2_1_5:70398727-70422449:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP;ENSG00000249437|ENST00000517649|NAIP;ENST00000315147.8_1_5:70265933-70281744:-|nuORF	ENST00000512908.2_1_5:70398727-70422449:-|nuORF	ENST00000512908.2_1_5:70398727-70422449:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	501.2853698730469	2	501.252243	1000.48993	-0.91131	-0.00045679	-4.3677	-0.0021893	-5.279	-0.0026461	501.2497852972453	81.657	0.20161	79.334	79.206	79.408	-2.3226					5	3	2	0	0	0	0.027448	1	4541	4541		53.351	16.192	1	27242			19992	9409	16312	16336	22121	22121					-0.010292984197008082
IPCLLRAKQLA	11	Carbamidomethyl (C)	_IPC(Carbamidomethyl (C))LLRAKQLA_	IPC(1)LLRAKQLA		IPC(41)LLRAKQLA		0	1	0			REV__ENST00000521249.1_1_14:102697254-102697464:-|nuORF	REV__ENST00000521249.1_1_14:102697254-102697464:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8815307617188	2	641.886832	1281.75911	-4.6434	-0.0029805	-1.9733	-0.0012666	-6.6167	-0.0042472	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.64273	1	15682	15682		40.778	9.2484	1	543390	+		19993	27066	16313	16337	22122	22122	335				0.12950260267484737
IPCPVLFL	8	Unmodified	_IPCPVLFL_					0	0	0		LTR2B_dup112|chr5:139531087-139531564:+|5.616613063847069|0.2101401634115403|4.74|424.0|15|3|sense	LTR2B_dup112|chr5:139531087-139531564:+|5.616613063847069|0.2101401634115403|4.74|424.0|15|3|sense	LTR2B_dup112|chr5:139531087-139531564:+|5.616613063847069|0.2101401634115403|4.74|424.0|15|3|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	451.2677001953125	2	451.264425	900.514297	3.9229	0.0017703	0.060635	2.7363E-05	3.9835	0.0017976	451.2643761804868	87.919	1.8703	86.488	85.642	87.513	-1.4311					79	37	4	0	0	0	0.64315	1	7699	7699		54.895	6.979	1	331550			19994	14806	16314	16338	22123	22123					0.0600600652447838
IPDAKLKT	8	Unmodified	_IPDAKLKT_					0	0	0		ENSG00000154262|ENST00000284425|ABCA6;ENST00000589803.5_1_17:67102167-67114054:-|nuORF	ENSG00000154262|ENST00000284425|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	MULTI-MSMS	OvCa9_classI_Rep2	2	443.27313232421875	2	443.273835	884.533118	0.83529	0.00037026	-3.8589	-0.0017105	-3.0236	-0.0013403	443.27205335230417	138.39	1.523	138.16	137.68	139.21	-0.22696					79	30	3	0	0	0	0.74754	1	13848	13848		27.882	0	1	138730			19995	5724	16315	16339	22124	22124					0.08623259419891838
IPDASKLQFIL	11	Unmodified	_IPDASKLQFIL_					0	0	0		nc|ENSG00000137100|O75935-3|DCTN3;ENSG00000137100|ENST00000259632|DCTN3;nc|ENSG00000137100|O75935-2|DCTN3	nc|ENSG00000137100|O75935-3|DCTN3	nc|ENSG00000137100|O75935-3|DCTN3	MULTI-MSMS	OvCa9_classI_Rep2	2	622.8663330078125	2	622.866089	1243.71762	0.080852	5.036E-05	0.055178	3.4369E-05	0.13603	8.4729E-05	622.8660250967379	130.93	1.4333	130.7	130.26	131.69	-0.22696					79	28	4	0	0	0	0.17265	5	12873	12873;12885;12892;12898;12904		83.647	32.312	1	289850			19996	4556	16316	16340	22125;22126;22127;22128;22129	22125					0.10551402779788077
IPDASKLQFIL	11	Unmodified	_IPDASKLQFIL_					0	0	0		nc|ENSG00000137100|O75935-3|DCTN3;ENSG00000137100|ENST00000259632|DCTN3;nc|ENSG00000137100|O75935-2|DCTN3	nc|ENSG00000137100|O75935-3|DCTN3	nc|ENSG00000137100|O75935-3|DCTN3	MULTI-MSMS	OvCa9_classI_Rep3	3	622.8668212890625	2	622.866089	1243.71762	0.88915	0.00055382	-0.81681	-0.00050876	0.072344	4.5061E-05	622.8654000115959	131.71	1.5392	130.58	130.24	131.78	-1.1249					80	30	4	0	0	0	0.36853	3	10502	10502;10514;10526		63.426	12.234	1	257180			19997	4556	16316	16340	22130;22131;22132	22130					0.10551402779788077
IPDASKLQFIL	11	Unmodified	_IPDASKLQFIL_					0	0	0		nc|ENSG00000137100|O75935-3|DCTN3;ENSG00000137100|ENST00000259632|DCTN3;nc|ENSG00000137100|O75935-2|DCTN3	nc|ENSG00000137100|O75935-3|DCTN3	nc|ENSG00000137100|O75935-3|DCTN3	MULTI-MSMS	OvCa9_classI_Rep4_	4	622.8671264648438	2	622.866089	1243.71762	4.0056	0.002495	-3.7722	-0.0023496	0.23345	0.00014541	622.8636174332638	131.98	1.7037	130.48	130.08	131.78	-1.5014					90	33	4	0	0	0	0.068205	2	12696	12685;12696		104.42	26.16	1	330550			19998	4556	16316	16340	22133;22134	22134					0.10551402779788077
IPDITHKILT	10	Unmodified	_IPDITHKILT_					0	0	0		tr|A0A7D6ZVA8|A0A7D6ZVA8_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03235PE=4SV=1	tr|A0A7D6ZVA8|A0A7D6ZVA8_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03235PE=4SV=1	tr|A0A7D6ZVA8|A0A7D6ZVA8_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03235PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8426513671875	2	575.845156	1149.67576	-2.1491	-0.0012375	-1.4619	-0.00084184	-3.611	-0.0020794	575.8441928035448	141.47	4.0925	141.24	139.21	143.3	-0.22696					166	82	3	0	0	0	0.762	1	14321	14321		23.523	2.5758	1	100260			19999	35798	16317	16341	22135	22135					0.10690847091291289
IPDVHFAN	8	Unmodified	_IPDVHFAN_					0	0	0		nc|ENSG00000134317|Q9NZI5-2|GRHL1;ENSG00000134317|ENST00000324907|GRHL1;ENST00000517674.5_1_8:102644467-102676686:+|nuORF;nc|ENSG00000083307|Q6ISB3-2|GRHL2;ENSG00000083307|ENST00000646743|GRHL2	nc|ENSG00000134317|Q9NZI5-2|GRHL1	nc|ENSG00000134317|Q9NZI5-2|GRHL1	MULTI-SECPEP	OvCa9_classI_Rep3	3	456.780029296875	2	456.732335	911.450116	0.15764	7.1998E-05	1.5517	0.0007087	1.7093	0.00078069	456.7339395779268	80.189	0.30358	77.849	77.709	78.013	-2.3399					7	5	2	0	0	0	0.028476	1	4367	4367		27.882	1.0861	1	8469.1			20000	4280	16318	16342	22136	22136					-0.009150573081001312
IPDVPIFL	8	Unmodified	_IPDVPIFL_					0	0	0		tr|A0A553SPG5|A0A553SPG5_NIACICamSfamilysexpheromoneproteinOS=NialliacirculansOX=1397GN=CEQ21_26380PE=4SV=1	tr|A0A553SPG5|A0A553SPG5_NIACICamSfamilysexpheromoneproteinOS=NialliacirculansOX=1397GN=CEQ21_26380PE=4SV=1	tr|A0A553SPG5|A0A553SPG5_NIACICamSfamilysexpheromoneproteinOS=NialliacirculansOX=1397GN=CEQ21_26380PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	457.272216796875	2	457.273304	912.532055	-1.1522	-0.00052689	-1.0916	-0.00049915	-2.2438	-0.001026	457.2715926853081	72.259	2.2859	68.803	67.874	70.16	-3.4563					121	46	5	0	0	0	0.40641	1	5547	5547		86.935	12.418	1	1358500			20001	34040	16319	16343	22137	22137					0.07229045050996774
IPEAPERLM	9	Oxidation (M)	_IPEAPERLM(Oxidation (M))_		IPEAPERLM(1)		IPEAPERLM(44)	0	0	1		ENSG00000134440|ENST00000256854|NARS1	ENSG00000134440|ENST00000256854|NARS1	ENSG00000134440|ENST00000256854|NARS1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.2801513671875	2	536.278792	1070.54303	1.6548	0.00088746	1.0862	0.00058253	2.7411	0.00147	536.2791305918773	135.51	0.70378	135.51	135.22	135.92	0					40	14	4	0	0	0	0.48324	1	15782	15782		44.117	7.0883	1	617950			20002	4297	16320	16344	22138	22138		140			0.010580793629515028
IPEGTNETPPG	11	Unmodified	_IPEGTNETPPG_					0	0	0			REV__nc|ENSG00000203780|Q8TC84-3|FANK1	REV__nc|ENSG00000203780|Q8TC84-3|FANK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	556.3339233398438	2	556.266936	1110.51932	0.53785	0.00029919	0.41337	0.00022994	0.95122	0.00052913	556.7679159090942	64.128	0.2445	60.653	60.539	60.784	-3.475					7	4	2	0	0	0	0.02567	1	4553	4553		62.107	5.3864	1	16167	+		20003	29094	16321	16345	22139	22139					-0.03152062869844485
IPEILSKLRDT	11	Unmodified	_IPEILSKLRDT_					0	0	0			REV__tr|A0A553SKC2|A0A553SKC2_NIACITypeIIsecretionsystemFfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_18345PE=3SV=1	REV__tr|A0A553SKC2|A0A553SKC2_NIACITypeIIsecretionsystemFfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_18345PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	643.373291015625	2	642.879727	1283.7449	-1.0062	-0.00064688	1.5063	0.0009684	0.50013	0.00032152	642.8805877763849	91.208	1.0099	89.184	88.829	89.839	-2.0241					41	19	3	0	0	0	0.025466	1	5778	5778		65.465	5.3471	1	90725	+		20004	30108	16322	16346	22140	22140					0.1143788632016367
IPEPQKPQL	9	Unmodified	_IPEPQKPQL_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MSMS	OvCa9_classI_Rep3	3	525.3036499023438	2	525.303124	1048.5917	-0.72816	-0.00038251	0.33166	0.00017422	-0.3965	-0.00020828	525.3031092355825	73.955	2.581	71.468	71.024	73.605	-2.4873					119	51	3	0	0	0	0.029147	2	3636	3636;3655		136.27	19.365	1	1236500			20005	2351	16323	16347	22141;22142	22141					0.06934315994362805
IPEPQKPQL	9	Unmodified	_IPEPQKPQL_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.304931640625	2	525.303124	1048.5917	-0.67339	-0.00035373	0.16317	8.5712E-05	-0.51022	-0.00026802	525.3030438677297	74.889	1.7859	71.658	71.24	73.026	-3.2308					80	36	3	0	0	0	0.1149	1	5895	5895		93.143	10.903	1	1217400			20006	2351	16323	16347	22143	22143					0.06934315994362805
IPEPQKPQL	9	Unmodified	_IPEPQKPQL_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	525.303124	1048.5917	-0.41877	-0.00021998	-0.25409	-0.00013347	-0.67286	-0.00035346	525.3027057042607	73.844	1.9864	71.444	71.001	72.988	-2.3999	-0.079439	-0.00037372	NaN	136.27	67	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	273130			20007	2351	16323	16347							0.06934315994362805
IPESLRNCVN	10	Unmodified	_IPESLRNCVN_					0	0	0		ENSG00000175029|ENST00000309035|CTBP2;ENST00000513884.1_1_5:97912076-97912961:+|nuORF;nc|ENSG00000175029|P56545|CTBP2;nc|ENSG00000175029|P56545-3|CTBP2;ENST00000526402.1_1_11:43543828-43544716:+|nuORF	ENSG00000175029|ENST00000309035|CTBP2	ENSG00000175029|ENST00000309035|CTBP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	571.806884765625	2	572.792598	1143.57064	-0.65044	-0.00037257	-1.2038	-0.0006895	-1.8542	-0.0010621	572.7914450647813	91.136	1.3736	88.594	88.244	89.618	-2.5425					32	26	2	0	0	0	0.027118	1	7838	7838		19.104	0	1	25316			20008	7507	16324	16348	22144	22144					0.0045998262323792005
IPFAKPPLGP	10	Unmodified	_IPFAKPPLGP_					0	0	0		nc|ENSG00000172831|O00748-2|CES2;ENST00000568470.5_1_16:66969809-66977925:+|nuORF;ENSG00000172831|ENST00000317091|CES2;nc|ENSG00000172831|O00748-5|CES2;nc|ENSG00000172831|O00748-4|CES2;ENST00000574030.5_2_16:55794553-55801328:+|nuORF;ENST00000566359.1_1_16:66969484-66972145:+|nuORF;nc|ENSG00000291109|Q9UKY3|CES1P1;CES2|p.L231Wfs*143|1|0.05|ENSG00000172831|chr16:66940295-66940295|C/-|frameshift_variant;nc|ENSG00000198848|P23141-3|CES1;nc|ENSG00000198848|P23141|CES1;ENSG00000198848|ENST00000360526|CES1	nc|ENSG00000172831|O00748-2|CES2	nc|ENSG00000172831|O00748-2|CES2	MULTI-MSMS	OvCa99_classI_Rep5	1	518.8119506835938	2	518.813128	1035.6117	0.30249	0.00015694	-4.0649	-0.0021089	-3.7624	-0.001952	518.811034395497	159.45	0.47487	159.45	159.24	159.71	0					15	9	2	0	0	0	0.64063	1	18683	18683		37.159	1.5408	1	74841			20009	7322	16325	16349	22145	22145					0.09532111724979586
IPFDTLLAR	9	Unmodified	_IPFDTLLAR_					0	0	0			REV__ENST00000458222.5_3_1:158900760-158901523:+|nuORF	REV__ENST00000458222.5_3_1:158900760-158901523:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	523.3057861328125	2	523.305667	1044.59678	-1.1199	-0.00058606	-2.9931	-0.0015663	-4.113	-0.0021524	523.303939796126	53.368	0.64913	53.368	53.043	53.692	0					42	14	5	0	0	0	0.44568	1	4246	4246		47.657	1.2006	1	3385200	+		20010	26055	16326	16350	22146	22146					0.0762661985700106
IPFGNLFS	8	Unmodified	_IPFGNLFS_					0	0	0		ENST00000409853.5_1_11:72712129-72726863:-|nuORF	ENST00000409853.5_1_11:72712129-72726863:-|nuORF	ENST00000409853.5_1_11:72712129-72726863:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	447.7405090332031	2	447.739628	893.464704	1.6365	0.00073274	0.26961	0.00012072	1.9061	0.00085345	447.73962730768875	156.41	0.7052	156.41	156.14	156.85	0					24	13	3	0	0	0	0.6962	1	18329	18329		44.117	3.5442	1	67403			20011	11537	16327	16351	22147	22147					0.013710148400377875
IPFGVLLTYK	10	Unmodified	_IPFGVLLTYK_					0	0	0			REV__tr|A0A7D6VXQ0|A0A7D6VXQ0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12825PE=4SV=1	REV__tr|A0A7D6VXQ0|A0A7D6VXQ0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12825PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8435668945312	2	575.847167	1149.67978	-4.018	-0.0023138	-2.943	-0.0016947	-6.9609	-0.0040084	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.71192	1	12090	12090		29.15	3.5755	1	445630	+		20012	31785	16328	16352	22148	22148					0.11092936584987001
IPFIKLANN	9	Unmodified	_IPFIKLANN_					0	0	0		ENST00000480552.5_1_7:140156054-140156144:-|nuORF	ENST00000480552.5_1_7:140156054-140156144:-|nuORF	ENST00000480552.5_1_7:140156054-140156144:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.3092651367188	2	515.30821	1028.60187	-0.86395	-0.0004452	2.9026	0.0014957	2.0386	0.0010505	515.3096728727091	99.459	2.081	97.134	96.743	98.824	-2.3253					63	40	2	0	0	0	0.36502	1	8915	8915		55.504	0.72789	1	2107800			20013	12532	16329	16353	22149	22149					0.08870923719609891
IPFLGLKN	8	Unmodified	_IPFLGLKN_					0	0	0			REV__nc|ENSG00000040199|Q6ZVD8-2|PHLPP2	REV__nc|ENSG00000040199|Q6ZVD8-2|PHLPP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.76104736328125	2	451.278921	900.543289	0.65813	0.000297	0.36045	0.00016266	1.0186	0.00045966	451.2790241864702	61.898	1.0659	58.44	58.29	59.356	-3.4577					38	21	2	0	0	0	0.028476	1	4371	4371		21.702	0	1	948510	+		20014	16626	16330	16354	22150	22150					0.08903867145136246
IPFLTHLLHF	10	Unmodified	_IPFLTHLLHF_					0	0	0			REV__tr|A0A553SFK3|A0A553SFK3_NIACICompetenceproteinCoiAOS=NialliacirculansOX=1397GN=CEQ21_09025PE=4SV=1	REV__tr|A0A553SFK3|A0A553SFK3_NIACICompetenceproteinCoiAOS=NialliacirculansOX=1397GN=CEQ21_09025PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	413.2405090332031	3	413.241248	1236.70191	2.1217	0.00087677	-2.3108	-0.00095493	-0.18915	-7.8163E-05	413.24014103402243	64.54	2.2304	61.547	60.987	63.218	-2.9933					100	43	4	0	0	0	0.68695	1	2491	2491		29.17	0	1	320450	+		20015	29587	16331	16355	22151	22151					0.09303161053412623
IPFRHVND	8	Unmodified	_IPFRHVND_					0	0	0			REV__tr|A0A7D6ZHL5|A0A7D6ZHL5_9CLOT6-phospho-alpha-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03380PE=3SV=1	REV__tr|A0A7D6ZHL5|A0A7D6ZHL5_9CLOT6-phospho-alpha-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03380PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.827392578125	2	499.264333	996.514114	2.1386	0.0010677	-3.1122	-0.0015538	-0.97365	-0.00048611	499.26199229458194	80.066	0.36592	80.066	79.783	80.148	0					10	8	2	0	0	0	0.028476	1	8178	8178		19.36	7.1531	1	144520	+		20016	32029	16332	16356	22152	22152					0.015717228488369983
IPFSWNKKPK	10	Unmodified	_IPFSWNKKPK_					0	0	0		nc|ENSG00000165792|Q9H7H0-2|METTL17;ENSG00000165792|ENST00000339374|METTL17;nc|ENSG00000165792|Q9H7H0-3|METTL17;ENST00000554849.1_1_14:21464355-21465046:+|nuORF;ENST00000555640.6_1_14:21464355-21465039:+|nuORF	nc|ENSG00000165792|Q9H7H0-2|METTL17	nc|ENSG00000165792|Q9H7H0-2|METTL17	MULTI-MSMS	OvCa9_classI_Rep4_	4	622.8659057617188	2	622.861141	1243.70773	4.0056	0.002495	4.1718	0.0025984	8.1774	0.0050934	622.8636174332638	131.98	1.7037	130.48	130.08	131.78	-1.5014					90	33	4	0	0	0	0.39172	1	12720	12720		69.628	2.6657	1	330550			20017	6597	16333	16357	22153	22153					0.09562259565063869
IPGAILQLI	9	Unmodified	_IPGAILQLI_					0	0	0		tr|A0A553ST71|A0A553ST71_NIACIOPTfamilyoligopeptidetransporterOS=NialliacirculansOX=1397GN=CEQ21_04365PE=4SV=1	tr|A0A553ST71|A0A553ST71_NIACIOPTfamilyoligopeptidetransporterOS=NialliacirculansOX=1397GN=CEQ21_04365PE=4SV=1	tr|A0A553ST71|A0A553ST71_NIACIOPTfamilyoligopeptidetransporterOS=NialliacirculansOX=1397GN=CEQ21_04365PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	469.3072204589844	2	469.307678	936.600803	1.4398	0.00067571	-1.6745	-0.00078584	-0.23467	-0.00011013	469.3068094178214	111.24	1.1876	110.14	109.8	110.99	-1.1038					38	23	2	0	0	0	0.44294	1	8078	8078		47.916	3.7988	1	161340			20018	34464	16334	16358	22154	22154					0.12996709350716174
IPGALLKP	8	Unmodified	_IPGALLKP_					0	0	0			REV__ENST00000562570.1_1_16:1026458-1026758:-|nuORF	REV__ENST00000562570.1_1_16:1026458-1026758:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	404.76824951171875	2	404.768189	807.521825	2.9766	0.0012048	-1.1144	-0.00045107	1.8622	0.00075375	404.76763507123366	125.19	0.78142	125.19	124.93	125.71	0					32	19	2	0	0	0	0.57589	1	14475	14475		69.093	6.1145	1	264670	+		20019	27650	16335	16359	22155	22155					0.1103648211642394
IPGDDICI	8	Unmodified	_IPGDDICI_					0	0	0			REV__ENSG00000197299|ENST00000355112|BLM	REV__ENSG00000197299|ENST00000355112|BLM	MULTI-SECPEP	OvCa9_classI_Rep2	2	424.2001953125	2	423.207304	844.400055	1.1517	0.00048739	-2.2969	-0.00097208	-1.1453	-0.00048469	423.20651336060826	127.91	0.73898	127.68	127.44	128.18	-0.22697					26	14	3	0	0	0	0.028476	1	12541	12541		8.8223	1.132	1	43342	+		20020	22909	16336	16360	22156	22156					-0.028369280282618092
IPGEIIVAHI	10	Unmodified	_IPGEIIVAHI_					0	0	0		ENSG00000165899|ENST00000547103|OTOGL	ENSG00000165899|ENST00000547103|OTOGL	ENSG00000165899|ENST00000547103|OTOGL	MULTI-MSMS	OvCa99_classI_Rep5	1	531.3207397460938	2	531.321317	1060.62808	1.0114	0.00053736	-2.7531	-0.0014628	-1.7417	-0.00092541	531.319723609414	154.15	1.3373	154.15	153.78	155.12	0					82	26	4	0	0	0	0.69986	1	18057	18057		30.504	0.18592	1	933000			20021	6609	16337	16361	22157	22157					0.10019192891104467
IPGERTGRLL	10	Unmodified	_IPGERTGRLL_					0	0	0			REV__nc|ENSG00000133103|Q9Y2V7-2|COG6	REV__nc|ENSG00000133103|Q9Y2V7-2|COG6	MULTI-MSMS	OvCa9_classI_Rep4_	4	556.3339233398438	2	556.332747	1110.65094	0.57108	0.00031771	-1.0549	-0.00058687	-0.48381	-0.00026916	556.3321178865446	64.102	1.1198	60.627	60.298	61.417	-3.475					73	22	4	0	0	0	0.49558	1	4553	4553		54.776	1.8396	1	983800	+		20022	19125	16338	16362	22158	22158					0.10004212008584545
IPGERTGRLL	10	Unmodified	_IPGERTGRLL_					0	0	0			REV__nc|ENSG00000133103|Q9Y2V7-2|COG6	REV__nc|ENSG00000133103|Q9Y2V7-2|COG6	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	556.332747	1110.65094	0.57108	0.00031771	-1.0549	-0.00058687	-0.48381	-0.00026916	556.3321178865446	64.102	1.1198	60.627	60.298	61.417	-3.475	0.071629	-0.0015067	NaN	54.776	73	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	983800	+		20023	19125	16338	16362							0.10004212008584545
IPGFGVPGII	10	Unmodified	_IPGFGVPGII_					0	0	0		tr|A0A7D6VP92|A0A7D6VP92_9CLOTSerineproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17830PE=4SV=1	tr|A0A7D6VP92|A0A7D6VP92_9CLOTSerineproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17830PE=4SV=1	tr|A0A7D6VP92|A0A7D6VP92_9CLOTSerineproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17830PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	484.7980041503906	2	485.292028	968.569503	0.16791	8.1487E-05	0.063965	3.1042E-05	0.23188	0.00011253	485.2901289732356	97.1	1.4705	96.142	95.825	97.296	-0.95857					99	29	5	0	0	0	0.026578	1	8741	8741		54.765	5.5539	1	288830			20024	34758	16339	16363	22159	22159					0.08396136316616776
IPGFGVPGII	10	Unmodified	_IPGFGVPGII_					0	0	0		tr|A0A7D6VP92|A0A7D6VP92_9CLOTSerineproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17830PE=4SV=1	tr|A0A7D6VP92|A0A7D6VP92_9CLOTSerineproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17830PE=4SV=1	tr|A0A7D6VP92|A0A7D6VP92_9CLOTSerineproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17830PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.79901123046875	2	485.292028	968.569503	-0.061107	-2.9655E-05	0.60116	0.00029174	0.54005	0.00026208	485.2904115424038	98.549	1.4397	96.171	95.822	97.262	-2.3786					89	27	5	0	0	0	0.026578	1	8735	8735		26.796	0	1	455650			20025	34758	16339	16363	22160	22160					0.08396136316616776
IPGGLRAAT	9	Unmodified	_IPGGLRAAT_					0	0	0		nc|ENSG00000179344|P01920|HLA-DQB1	nc|ENSG00000179344|P01920|HLA-DQB1	nc|ENSG00000179344|P01920|HLA-DQB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	428.2568054199219	2	428.255977	854.497401	0.42461	0.00018184	-0.78693	-0.00033701	-0.36232	-0.00015517	428.2555300001591	62.05	1.7323	58.592	58.057	59.789	-3.4577					90	35	4	0	0	0	0.3076	1	4283	4283		62.107	5.3864	1	499820			20026	15199	16340	16364	22161	22161					0.06433221962879543
IPGGLRAAT	9	Unmodified	_IPGGLRAAT_					0	0	0		nc|ENSG00000179344|P01920|HLA-DQB1	nc|ENSG00000179344|P01920|HLA-DQB1	nc|ENSG00000179344|P01920|HLA-DQB1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	428.255977	854.497401	-1.5697	-0.00067222	0.93561	0.00040068	-0.63406	-0.00027154	428.256168036307	61.419	1.8964	58.66	58.04	59.937	-2.7593	0.03368	0.001147	NaN	62.107	74	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96604			20027	15199	16340	16364							0.06433221962879543
IPGGRLVL	8	Unmodified	_IPGGRLVL_					0	0	0		ENST00000477183.1_1_9:6492313-6492544:+|nuORF	ENST00000477183.1_1_9:6492313-6492544:+|nuORF	ENST00000477183.1_1_9:6492313-6492544:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	412.77178955078125	2	412.771263	823.527973	-0.40706	-0.00016802	0.58545	0.00024166	0.17839	7.3634E-05	412.77137174330215	93.348	1.4663	91.386	91.079	92.545	-1.9617					64	28	3	0	0	0	0.60486	1	5971	5971		62.978	5.5258	1	465000			20028	12474	16341	16365	22162	22162					0.1091500034793853
IPGGRLVL	8	Unmodified	_IPGGRLVL_					0	0	0		ENST00000477183.1_1_9:6492313-6492544:+|nuORF	ENST00000477183.1_1_9:6492313-6492544:+|nuORF	ENST00000477183.1_1_9:6492313-6492544:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	412.7722473144531	2	412.771263	823.527973	0.061376	2.5334E-05	0.66446	0.00027427	0.72584	0.00029961	412.7713807300369	93.938	1.2597	91.431	91.212	92.472	-2.5072					53	25	3	0	0	0	0.69415	1	8229	8229		44.531	7.5026	1	408510			20029	12474	16341	16365	22163	22163					0.1091500034793853
IPGKRNVLA	9	Unmodified	_IPGKRNVLA_					0	0	0			REV__ENST00000425046.1_1_3:4345037-4358927:+|nuORF	REV__ENST00000425046.1_1_3:4345037-4358927:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.3057556152344	2	484.306001	966.597449	-0.49998	-0.00024214	-0.25446	-0.00012323	-0.75443	-0.00036538	484.3057338859189	51.419	1.3583	48.245	47.872	49.23	-3.1734					73	26	4	0	0	0	0.46377	1	3035	3035		45.952	1.8352	1	683560	+		20030	21533	16342	16366	22164	22164					0.11281459296696994
IPGMEGEVL	9	Unmodified	_IPGMEGEVL_					0	0	0		ENSG00000174373|ENST00000680220|RALGAPA1;nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1;ENST00000554704.5_1_14:36176787-36221314:-|nuORF;ENST00000443361.1_1_9:108283251-108284913:+|nuORF;ENST00000554652.5_1_14:36147090-36221314:-|nuORF;nc|ENSG00000174373|Q6GYQ0-3|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	MULTI-MSMS	OvCa99_classI_Rep5	1	472.74273681640625	2	472.741511	943.468469	1.462	0.00069114	1.9229	0.00090904	3.3849	0.0016002	472.74210579252497	146.83	0.54022	146.83	146.57	147.11	0					17	10	2	0	0	0	0.53957	1	17175	17175		38.806	0	1	48985			20031	7460	16343	16367	22165	22165					-0.005526834483930543
IPGQKGDTSKV	11	Unmodified	_IPGQKGDTSKV_					0	0	0			REV__nc|ENSG00000134028|O15204-2|ADAMDEC1	REV__nc|ENSG00000134028|O15204-2|ADAMDEC1	MULTI-SECPEP	OvCa9_classI_Rep3	3	564.8069458007812	2	565.31422	1128.61389	-0.81979	-0.00046344	0.77421	0.00043767	-0.045575	-2.5764E-05	565.3154108327404	90.474	0.81886	88.393	88.004	88.823	-2.0805					28	15	3	0	0	0	0.025344	1	5642	5642		41.427	17.904	1	342840	+		20032	19170	16344	16368	22166	22166					0.054724956721202034
IPHGKGLSST	10	Unmodified	_IPHGKGLSST_					0	0	0			REV__ENST00000493615.5_1_3:110837734-110840977:+|nuORF	REV__ENST00000493615.5_1_3:110837734-110840977:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.7879333496094	2	498.777274	995.539994	-0.38933	-0.00019419	0.4485	0.0002237	0.059172	2.9514E-05	498.77726111453813	42.818	0.73107	42.818	42.496	43.227	0					27	16	3	0	0	0	0.026956	1	2836	2836		34.173	5.023	1	646880	+		20033	26710	16345	16369	22167	22167					0.04204572300466225
IPHGKGLSST	10	Unmodified	_IPHGKGLSST_					0	0	0			REV__ENST00000493615.5_1_3:110837734-110840977:+|nuORF	REV__ENST00000493615.5_1_3:110837734-110840977:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	498.777274	995.539994	-0.37596	-0.00018752	-0.11777	-5.8743E-05	-0.49373	-0.00024626	498.77712857904754	45.696	0.65266	42.987	42.697	43.349	-2.7097	0.13695	-0.00064437	NaN	26.693	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30678	+		20034	26710	16345	16369							0.04204572300466225
IPHNKPLF	8	Unmodified	_IPHNKPLF_					0	0	0		ENSG00000110395|ENST00000264033|CBL;CBL|p.Q316H|1|0.21|ENSG00000110395|chr11:119276075-119276075|G/T|missense_variant;nc|ENSG00000114423|Q13191-3|CBLB;nc|ENSG00000114423|Q13191-2|CBLB;ENSG00000114423|ENST00000394030|CBLB	ENSG00000110395|ENST00000264033|CBL;nc|ENSG00000114423|Q13191-3|CBLB	ENSG00000110395|ENST00000264033|CBL	MULTI-SECPEP	OvCa9_classI_Rep2	2	484.2807922363281	2	483.281995	964.549437	-1.312	-0.00063408	4.4792	0.0021647	3.1672	0.0015306	483.2842280556789	85.699	1.1548	84.208	83.801	84.956	-1.4906					39	22	2	0	0	0	0.028476	1	7405	7405		31.579	1.0753	1	126530			20035	2771;3019	16346	16370	22168	22168					0.06574385376654845
IPHNKPLF	8	Unmodified	_IPHNKPLF_					0	0	0		ENSG00000110395|ENST00000264033|CBL;CBL|p.Q316H|1|0.21|ENSG00000110395|chr11:119276075-119276075|G/T|missense_variant;nc|ENSG00000114423|Q13191-3|CBLB;nc|ENSG00000114423|Q13191-2|CBLB;ENSG00000114423|ENST00000394030|CBLB	ENSG00000110395|ENST00000264033|CBL;nc|ENSG00000114423|Q13191-3|CBLB	ENSG00000110395|ENST00000264033|CBL	MULTI-MATCH	OvCa9_classI_Rep3	3		2	483.281995	964.549437	-1.2175	-0.0005884	5.3096	0.002566	4.0921	0.0019776	483.2845798041322	86.404	1.2584	84.202	83.804	85.062	-2.2015	-0.0029705	0.00086334	NaN	31.579	46	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212640			20036	2771;3019	16346	16370							0.06574385376654845
IPHSIYKTKL	10	Unmodified	_IPHSIYKTKL_					0	0	0		PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant;ENSG00000205038|ENST00000378402|PKHD1L1	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	400.57635498046875	3	400.576408	1198.70739	1.3196	0.00052861	-1.2069	-0.00048346	0.11273	4.5157E-05	400.57584360186854	59.158	1.6195	56.378	56.137	57.756	-2.7801					103	30	5	0	0	0	0.39718	2	4301	4301;4319		68.846	9.1897	1	716960			20037	9047	16347	16371	22169;22170	22169					0.1159883984521457
IPHSIYKTKL	10	Unmodified	_IPHSIYKTKL_					0	0	0		PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant;ENSG00000205038|ENST00000378402|PKHD1L1	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	400.5772705078125	3	400.576408	1198.70739	2.4787	0.00099292	-2.7788	-0.0011131	-0.30012	-0.00012022	400.575280707274	60.048	1.9782	56.618	56.013	57.991	-3.43					98	39	4	0	0	0	0.27679	3	4046	4036;4046;4060		83.647	23.716	1	722380			20038	9047	16347	16371	22171;22172;22173	22172					0.1159883984521457
IPHTLLSRD	9	Unmodified	_IPHTLLSRD_					0	0	0			REV__ENST00000536649.5_1_19:14208073-14223129:-|nuORF	REV__ENST00000536649.5_1_19:14208073-14223129:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.3021240234375	2	526.298373	1050.58219	-0.18129	-9.5411E-05	3.7674	0.0019828	3.5861	0.0018874	526.3002102949349	130.25	0.8405	129.14	128.83	129.67	-1.1121					23	16	2	0	0	0	0.027462	1	10356	10356		42.396	11.892	1	18989	+		20039	27299	16348	16372	22174	22174					0.058925477088678235
IPIAGLPPGE	10	Unmodified	_IPIAGLPPGE_					0	0	0			REV__ENSG00000173545|ENST00000308683|ZNF622	REV__ENSG00000173545|ENST00000308683|ZNF622	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.26654052734375	2	482.279118	962.543683	0.38597	0.00018615	-1.5806	-0.00076227	-1.1946	-0.00057612	482.27810465027255	72.704	0.42311	72.704	72.492	72.915	0					18	10	3	0	0	0	0.026871	1	7112	7112		21.96	0	1	387250	+		20040	21781	16349	16373	22175	22175					0.06091242074319325
IPIIVKNSN	9	Unmodified	_IPIIVKNSN_					0	0	0			REV__tr|A0A7D6W2W5|A0A7D6W2W5_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07845PE=4SV=1	REV__tr|A0A7D6W2W5|A0A7D6W2W5_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07845PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	499.3053894042969	2	499.305667	996.596781	-0.15544	-7.7614E-05	0.06889	3.4397E-05	-0.086553	-4.3217E-05	499.3055389013854	109.26	1.4344	109.09	108.67	110.11	-0.17237					82	28	4	0	0	0	0.28934	1	10297	10297		64.207	14.766	1	327050	+		20041	31906	16350	16374	22176	22176					0.09834619856985682
IPIKGKDRKPG	11	Unmodified	_IPIKGKDRKPG_					0	0	0		LDLRAD4|p.V293I|1|0.07|ENSG00000168675|chr18:13645613-13645613|G/A|missense_variant	LDLRAD4|p.V293I|1|0.07|ENSG00000168675|chr18:13645613-13645613|G/A|missense_variant	LDLRAD4|p.V293I|1|0.07|ENSG00000168675|chr18:13645613-13645613|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	403.5867614746094	3	403.587307	1207.74009	2.5756	0.0010395	-2.3998	-0.00096853	0.1758	7.0949E-05	403.5861980627301	62.538	1.4885	59.504	59.214	60.703	-3.0339					41	29	3	0	0	0	0.72069	1	2267	2267		22.562	5.0936	1	42810			20042	14796	16351	16375	22177	22177					0.14453046968060335
IPIKGKDRKPG	11	Unmodified	_IPIKGKDRKPG_					0	0	0		LDLRAD4|p.V293I|1|0.07|ENSG00000168675|chr18:13645613-13645613|G/A|missense_variant	LDLRAD4|p.V293I|1|0.07|ENSG00000168675|chr18:13645613-13645613|G/A|missense_variant	LDLRAD4|p.V293I|1|0.07|ENSG00000168675|chr18:13645613-13645613|G/A|missense_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	403.587307	1207.74009	1.3734	0.00055427	-1.6223	-0.00065472	-0.2489	-0.00010045	403.58657180596316	62.908	1.6433	59.45	59.011	60.655	-3.4577	-0.02676	0.00022167	NaN	22.562	93	33	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	596140			20043	14796	16351	16375							0.14453046968060335
IPIKKTKKG	9	Unmodified	_IPIKKTKKG_					0	0	0		MBD4|p.Y485Ifs*6|1|0.11|ENSG00000129071|chr3:129433206-129433206|A/-|frameshift_variant;nc|ENSG00000129071|O95243-3|MBD4;nc|ENSG00000129071|O95243-5|MBD4;ENSG00000129071|ENST00000429544|MBD4;nc|ENSG00000129071|O95243|MBD4	MBD4|p.Y485Ifs*6|1|0.11|ENSG00000129071|chr3:129433206-129433206|A/-|frameshift_variant	MBD4|p.Y485Ifs*6|1|0.11|ENSG00000129071|chr3:129433206-129433206|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.8478088378906	2	506.847502	1011.68045	-0.50179	-0.00025433	1.4626	0.00074133	0.96083	0.000487	506.8480272934303	77.534	1.5351	74.717	74.391	75.926	-2.8165					55	31	2	0	0	0	0.51865	1	6167	6167		40.778	10.275	1	106790			20044	3918	16352	16376	22178	22178					0.17507776024694977
IPILGFNTKIE	11	Unmodified	_IPILGFNTKIE_					0	0	0			REV__tr|A0A7D6ZRT6|A0A7D6ZRT6_9CLOTWGrepeat-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13435PE=4SV=1	REV__tr|A0A7D6ZRT6|A0A7D6ZRT6_9CLOTWGrepeat-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13435PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	622.8663330078125	2	622.866089	1243.71762	0.080852	5.036E-05	0.055178	3.4369E-05	0.13603	8.4729E-05	622.8660250967379	130.93	1.4333	130.7	130.26	131.69	-0.22696					79	28	4	0	0	0	0.50928	1	12919	12919		52.937	13.684	1	289850	+		20045	32165	16353	16377	22179	22179					0.1055140277976534
IPIMDNLNKIL	11	Unmodified	_IPIMDNLNKIL_					0	0	0		tr|A0A7D6VSD5|A0A7D6VSD5_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06040PE=4SV=1	tr|A0A7D6VSD5|A0A7D6VSD5_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06040PE=4SV=1	tr|A0A7D6VSD5|A0A7D6VSD5_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06040PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	427.7593994140625	3	428.584574	1282.73189	0.85036	0.00036445	-4.1368	-0.001773	-3.2865	-0.0014085	428.5814573333562	66.946	0.49237	63.456	63.247	63.739	-3.4902					14	9	2	0	0	0	0.025955	1	4904	4904		18.531	0	1	10778			20046	35016	16354	16378	22180	22180					0.10183731936444929
IPININLKV	9	Unmodified	_IPININLKV_					0	0	0		tr|A0A7D6ZIJ2|A0A7D6ZIJ2_9CLOTAdenosylcobinamide-GDPribazoletransferaseOS=ClostridiumintestinaleOX=36845GN=cobSPE=3SV=1	tr|A0A7D6ZIJ2|A0A7D6ZIJ2_9CLOTAdenosylcobinamide-GDPribazoletransferaseOS=ClostridiumintestinaleOX=36845GN=cobSPE=3SV=1	tr|A0A7D6ZIJ2|A0A7D6ZIJ2_9CLOTAdenosylcobinamide-GDPribazoletransferaseOS=ClostridiumintestinaleOX=36845GN=cobSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	512.2794189453125	2	512.331685	1022.64882	0.48468	0.00024832	-0.6213	-0.00031831	-0.13662	-6.9996E-05	512.3311186683127	112	0.59154	111.86	111.57	112.16	-0.13961					18	11	2	0	0	0	0.027462	1	10573	10573		24.203	0	1	20656			20047	35616	16355	16379	22181	22181					0.13839783270736916
IPIPVPLPVI	10	Unmodified	_IPIPVPLPVI_					0	0	0			REV__ENSG00000112320|ENST00000317357|SOBP	REV__ENSG00000112320|ENST00000317357|SOBP	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.3408203125	2	529.354628	1056.6947	0.81603	0.00043197	1.2402	0.00065652	2.0563	0.0010885	529.3549833971965	139.85	0.51102	139.85	139.61	140.12	0					24	10	3	0	0	0	0.026471	1	16321	16321		65.897	13.598	1	256020	+		20048	18093	16356	16380	22182	22182					0.16862428452964195
IPISLHTSL	9	Unmodified	_IPISLHTSL_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-2|PRRC2B;nc|ENSG00000288701|Q5JSZ5-3|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-4|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.7914733886719	2	490.792392	979.570232	-0.78489	-0.00038522	0.56555	0.00027757	-0.21933	-0.00010765	490.79245147722105	100.69	1.63	98.42	97.825	99.455	-2.2665					59	32	3	0	0	0	0.079296	1	9023	9023		102.77	1.5207	1	315150			20049	15389	16357	16381	22183	22183					0.07962930965663872
IPIVLTYLVH	10	Unmodified	_IPIVLTYLVH_					0	0	0			REV__ENSG00000127954|ENST00000380079|STEAP4	REV__ENSG00000127954|ENST00000380079|STEAP4	MULTI-MSMS	OvCa9_classI_Rep3	3	584.3565673828125	2	584.360442	1166.70633	-4.6254	-0.0027029	-2.3023	-0.0013454	-6.9277	-0.0040483	584.3589865391973	145.25	4.5766	144.28	142.9	147.48	-0.97299					233	91	4	0	0	0	0.75594	1	12145	12145		24.203	1.1603	1	156220	+		20050	18834	16358	16382	22184	22184					0.12964625476297442
IPIWTGRYE	9	Unmodified	_IPIWTGRYE_					0	0	0			REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.7432861328125	2	567.800749	1133.58694	1.5035	0.00085367	2.3687	0.0013449	3.8721	0.0021986	567.8015515823508	130.87	0.28618	130.87	130.72	131.01	0					8	5	2	0	0	0	0.027462	1	15175	15175		29.15	0	1	45162	+		20051	16748	16359	16383	22185	22185					0.025494318515939085
IPKGEKNSYIE	11	Unmodified	_IPKGEKNSYIE_					0	0	0		tr|A0A7D6VTN1|A0A7D6VTN1_9CLOTEnergy-couplingfactortransportertransmembraneproteinEcfTOS=ClostridiumintestinaleOX=36845GN=HZF06_03255PE=4SV=1	tr|A0A7D6VTN1|A0A7D6VTN1_9CLOTEnergy-couplingfactortransportertransmembraneproteinEcfTOS=ClostridiumintestinaleOX=36845GN=HZF06_03255PE=4SV=1	tr|A0A7D6VTN1|A0A7D6VTN1_9CLOTEnergy-couplingfactortransportertransmembraneproteinEcfTOS=ClostridiumintestinaleOX=36845GN=HZF06_03255PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	639.0299072265625	2	639.340435	1276.66632	NaN	NaN	NaN	NaN	NaN	NaN	NaN	160.07	1	160.07	159.57	160.57	0								0	0	0	0.19388	1	18766	18766		35.152	5.982	1				20052	35126	16360	16384	22186	22186					0.03905034015087949
IPKINNVSTII	11	Unmodified	_IPKINNVSTII_					0	0	0		tr|A0A7D6VPE2|A0A7D6VPE2_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22725PE=3SV=1	tr|A0A7D6VPE2|A0A7D6VPE2_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22725PE=3SV=1	tr|A0A7D6VPE2|A0A7D6VPE2_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22725PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3684692382812	2	606.371538	1210.72852	-2.264	-0.0013728	-1.0272	-0.00062285	-3.2912	-0.0019957	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.70142	1	12374	12374		29.17	2.4771	1	205770			20053	34764	16361	16385	22187	22187					0.13158805154080255
IPKKHISQI	9	Unmodified	_IPKKHISQI_					0	0	0		ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.3331298828125	2	532.334759	1062.65496	-1.9761	-0.0010519	1.7117	0.00091122	-0.26435	-0.00014072	532.3355365435302	42.415	1.0279	39.435	39.167	40.195	-2.9804					63	19	4	0	0	0	0.35694	1	1978	1978		56.434	3.4971	1	369130			20054	7019	16362	16386	22188	22188					0.12614301502276248
IPKKHISQI	9	Unmodified	_IPKKHISQI_					0	0	0		ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	532.334759	1062.65496	-0.037954	-2.0204E-05	-0.1292	-6.8779E-05	-0.16716	-8.8983E-05	532.3345155644053	42.143	1.1346	39.433	39.078	40.213	-2.7097	-0.00087073	-0.001169	NaN	56.434	52	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95974			20055	7019	16362	16386							0.12614301502276248
IPKKNILLT	9	Unmodified	_IPKKNILLT_					0	0	0		CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant;ENSG00000084774|ENST00000264705|CAD;ENST00000479002.1_1_2:27457475-27458610:+|nuORF	CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3474731445312	2	520.347335	1038.68012	1.3364	0.00069541	-1.6775	-0.00087287	-0.34103	-0.00017745	520.346442572037	129.27	2.7244	129.04	128.62	131.35	-0.22697					153	54	5	0	0	0	0.61208	1	12779	12779		30.504	0.18592	1	2451300			20056	176	16363	16387	22189	22189					0.16232356304840323
IPKKPPKGK	9	Unmodified	_IPKKPPKGK_					0	0	0		nc|ENSG00000198010|Q9P1A6-2|DLGAP2;nc|ENSG00000198010|Q9P1A6|DLGAP2;nc|ENSG00000198010|Q9P1A6-3|DLGAP2;ENSG00000198010|ENST00000637795|DLGAP2	nc|ENSG00000198010|Q9P1A6-2|DLGAP2	nc|ENSG00000198010|Q9P1A6-2|DLGAP2	MULTI-SECPEP	OvCa9_classI_Rep2	2	496.82086181640625	2	496.834394	991.654236	0.51406	0.0002554	-1.8393	-0.00091382	-1.3252	-0.00065842	496.8333664619677	71.016	0.73277	68.446	68.114	68.847	-2.5707					18	13	2	0	0	0	0.027462	1	5712	5712		25.45	13.243	1	12850			20057	15254	16364	16388	22190	22190					0.15807506853218456
IPKKPPKGK	9	Unmodified	_IPKKPPKGK_					0	0	0		nc|ENSG00000198010|Q9P1A6-2|DLGAP2;nc|ENSG00000198010|Q9P1A6|DLGAP2;nc|ENSG00000198010|Q9P1A6-3|DLGAP2;ENSG00000198010|ENST00000637795|DLGAP2	nc|ENSG00000198010|Q9P1A6-2|DLGAP2	nc|ENSG00000198010|Q9P1A6-2|DLGAP2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	496.834394	991.654236	-1.1769	-0.00058473	0.37485	0.00018624	-0.80206	-0.00039849	496.8344275984856	71.98	0.43794	68.524	68.364	68.802	-3.4563	0.039168	0.00048036	NaN	18.324	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27481			20058	15254	16364	16388							0.15807506853218456
IPKLKTRTQK	10	Unmodified	_IPKLKTRTQK_					0	0	0		ENST00000282999.7_1_5:112200406-112203231:+|nuORF;ENSG00000153037|ENST00000505459|SRP19	ENST00000282999.7_1_5:112200406-112203231:+|nuORF	ENST00000282999.7_1_5:112200406-112203231:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	607.283447265625	2	606.892972	1211.77139	-0.47423	-0.0002878	0.23691	0.00014378	-0.23731	-0.00014402	606.8928391000273	43.006	0.57732	39.999	39.801	40.378	-3.0074					15	10	2	0	0	0	0.027343	1	2069	2069		13.454	3.1888	1	15674			20059	5656	16365	16389	22191	22191					0.17397620002157055
IPKLKTRTQK	10	Unmodified	_IPKLKTRTQK_					0	0	0		ENST00000282999.7_1_5:112200406-112203231:+|nuORF;ENSG00000153037|ENST00000505459|SRP19	ENST00000282999.7_1_5:112200406-112203231:+|nuORF	ENST00000282999.7_1_5:112200406-112203231:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	606.892972	1211.77139	0.34113	0.00020703	-0.84169	-0.00051082	-0.50056	-0.00030379	606.8923632699696	42.764	0.44377	40.054	39.818	40.262	-2.7097	0.027468	-0.0003428	NaN	13.454	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11118			20060	5656	16365	16389							0.17397620002157055
IPKMLPPVL	9	Unmodified	_IPKMLPPVL_					0	0	0			REV__ENSG00000205496|ENST00000380371|OR51A2	REV__ENSG00000205496|ENST00000380371|OR51A2	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.3188171386719	2	504.319731	1006.62491	-0.94063	-0.00047438	0.47491	0.00023951	-0.46571	-0.00023487	504.3198291935092	144.23	1.5675	142.79	142.43	143.99	-1.4357					72	29	4	0	0	0	0.6959	1	14119	14119		19.36	2.8868	1	140800	+		20061	23219	16366	16390	22192	22192					0.12186226512721987
IPKNKALII	9	Unmodified	_IPKNKALII_					0	0	0		tr|A0A7D6ZXD8|A0A7D6ZXD8_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22595PE=4SV=1	tr|A0A7D6ZXD8|A0A7D6ZXD8_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22595PE=4SV=1	tr|A0A7D6ZXD8|A0A7D6ZXD8_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22595PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	505.3417663574219	2	505.342052	1008.66955	-1.2256	-0.00061935	0.24452	0.00012356	-0.9811	-0.00049579	505.3419478940064	134.8	1.6252	133.68	133.41	135.03	-1.1226					106	32	5	0	0	0	0.36502	1	10874	10874		55.504	2.1528	1	959590			20062	35875	16367	16391	22193	22193					0.16556373650416845
IPKPLNPAL	9	Unmodified	_IPKPLNPAL_					0	0	0		ENSG00000166619|ENST00000373537|BLCAP	ENSG00000166619|ENST00000373537|BLCAP	ENSG00000166619|ENST00000373537|BLCAP	MULTI-MSMS	OvCa9_classI_Rep3	3	481.8061218261719	2	481.805303	961.596052	-0.97153	-0.00046809	0.54152	0.00026091	-0.43001	-0.00020718	481.80540568009116	86.866	1.4807	84.689	84.431	85.911	-2.1768					77	28	4	0	0	0	0.13154	2	5198	5198;5204		88.643	10.299	1	615730			20063	6698	16368	16392	22194;22195	22194					0.11371825207925212
IPKPLNPAL	9	Unmodified	_IPKPLNPAL_					0	0	0		ENSG00000166619|ENST00000373537|BLCAP	ENSG00000166619|ENST00000373537|BLCAP	ENSG00000166619|ENST00000373537|BLCAP	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.8058776855469	2	481.805303	961.596052	-0.72454	-0.00034909	-0.049004	-2.3611E-05	-0.77354	-0.0003727	481.80516849740394	87.251	1.406	84.624	84.3	85.706	-2.6269					67	27	4	0	0	0	0.19716	2	7407	7407;7419		76.847	13.282	1	599920			20064	6698	16368	16392	22196;22197	22196					0.11371825207925212
IPKPLNPAL	9	Unmodified	_IPKPLNPAL_					0	0	0		ENSG00000166619|ENST00000373537|BLCAP	ENSG00000166619|ENST00000373537|BLCAP	ENSG00000166619|ENST00000373537|BLCAP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	481.805303	961.596052	-0.78903	-0.00038016	0.1927	9.2842E-05	-0.59633	-0.00028732	481.80525131376817	86.089	1.5359	84.598	84.245	85.781	-1.4906	-0.038907	-2.862E-05	NaN	88.643	72	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	330770			20065	6698	16368	16392							0.11371825207925212
IPKQVSISF	9	Unmodified	_IPKQVSISF_					0	0	0		ENST00000473909.5_1_3:160939100-160952664:+|nuORF;NMD3|p.E473*|1|0.16|ENSG00000169251|chr3:161250813-161250829|ATGAAGGAGCACCTCGA/-|frameshift_variant;ENSG00000169251|ENST00000351193|NMD3	ENST00000473909.5_1_3:160939100-160952664:+|nuORF	ENST00000473909.5_1_3:160939100-160952664:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8000793457031	2	509.800217	1017.58588	1.0924	0.00055691	-1.61	-0.00082076	-0.51755	-0.00026385	509.79931497126813	65.759	0.89664	63.063	62.67	63.567	-2.6958					56	17	4	0	0	0	0.064985	6	5074	5059;5063;5067;5074;5081;5089		110.12	12.282	1	744640			20066	6994	16369	16393	22198;22199;22200;22201;22202;22203	22201					0.07779217482720924
IPKQVSISF	9	Unmodified	_IPKQVSISF_					0	0	0		ENST00000473909.5_1_3:160939100-160952664:+|nuORF;NMD3|p.E473*|1|0.16|ENSG00000169251|chr3:161250813-161250829|ATGAAGGAGCACCTCGA/-|frameshift_variant;ENSG00000169251|ENST00000351193|NMD3	ENST00000473909.5_1_3:160939100-160952664:+|nuORF	ENST00000473909.5_1_3:160939100-160952664:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.8014221191406	2	509.800217	1017.58588	-0.60679	-0.00030934	0.22815	0.00011631	-0.37864	-0.00019303	509.80020673630776	66.521	1.031	63.031	62.708	63.739	-3.4902					51	15	4	0	0	0	0.045281	3	4844	4834;4844;4858		122.18	7.9824	1	991030			20067	6994	16369	16393	22204;22205;22206	22205					0.07779217482720924
IPKRFSSPC	9	Unmodified	_IPKRFSSPC_					0	0	0			REV__ENST00000491252.5_1_2:74710449-74717828:+|nuORF	REV__ENST00000491252.5_1_2:74710449-74717828:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	517.77734375	2	517.776219	1033.53789	-0.39793	-0.00020604	2.5708	0.0013311	2.1729	0.0011251	517.7774369475106	30.707	0.7378	30.707	30.433	31.171	0					35	14	4	0	0	0	0.21395	1	1200	1200		73.975	1.0955	1	418610	+		20068	26633	16370	16394	22207	22207					0.022458202910002
IPKRKRIDPM	10	Unmodified	_IPKRKRIDPM_					0	0	0			REV__ENSG00000130477|ENST00000519716|UNC13A	REV__ENSG00000130477|ENST00000519716|UNC13A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	417.9103698730469	3	418.588542	1252.7438	0.55109	0.00023068	4.0986	0.0017156	4.6497	0.0019463	418.9246839798511	35.372	0.44987	32.523	32.29	32.74	-2.849					9	8	2	0	0	0	0.026782	1	1111	1111		37.812	3.725	1	9417.7	+		20069	18947	16371	16395	22208	22208					0.12753393470279661
IPKSAVGEL	9	Unmodified	_IPKSAVGEL_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46314678-46340855:-|nuORF;nc|ENSG00000139626|P26010-2|ITGB7;ENSG00000139626|ENST00000267082|ITGB7	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MULTI-MSMS	OvCa9_classI_Rep2	2	457.27069091796875	2	457.271293	912.528032	1.3911	0.00063613	1.6434	0.0007515	3.0346	0.0013876	457.27049797468743	71.288	1.778	68.781	68.177	69.955	-2.5071					119	33	5	0	0	0	0.35694	1	5743	5743		56.434	3.4971	1	410510			20070	6050	16372	16396	22209	22209					0.06826955557278325
IPKSAVGEL	9	Unmodified	_IPKSAVGEL_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46314678-46340855:-|nuORF;nc|ENSG00000139626|P26010-2|ITGB7;ENSG00000139626|ENST00000267082|ITGB7	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MULTI-MSMS	OvCa9_classI_Rep4_	4	457.2724609375	2	457.271293	912.528032	-1.1522	-0.00052689	3.3071	0.0015122	2.1548	0.00098534	457.2715926853081	72.259	2.2859	68.803	67.874	70.16	-3.4563					121	46	5	0	0	0	0.22035	1	5558	5558		72.879	14.097	1	1358500			20071	6050	16372	16396	22210	22210					0.06826955557278325
IPKSAVGTL	9	Unmodified	_IPKSAVGTL_					0	0	0		nc|ENSG00000150093|P05556-2|ITGB1;ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;ITGB1-SEPT2|1|fusion;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	nc|ENSG00000150093|P05556-2|ITGB1	nc|ENSG00000150093|P05556-2|ITGB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	443.2743225097656	2	443.273835	884.533118	-0.83909	-0.00037194	0.71136	0.00031533	-0.12773	-5.6617E-05	443.2740437200295	69.706	1.2701	66.225	65.762	67.032	-3.4812					66	25	3	0	0	0	0.1944	1	5229	5229		77.318	5.4401	1	963180			20072	5500	16373	16397	22211	22211					0.08623259419891838
IPKSPLQSLKT	11	Unmodified	_IPKSPLQSLKT_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3694458007812	2	606.371538	1210.72852	-3.14	-0.001904	-0.05994	-3.6346E-05	-3.1999	-0.0019404	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.71582	1	14861	14861		24.232	5.1283	1	257720			20073	7829	16374	16398	22212	22212					0.13158805154057518
IPKSPLQSLKT	11	Unmodified	_IPKSPLQSLKT_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3684692382812	2	606.371538	1210.72852	-1.3399	-0.00081245	-1.8512	-0.0011225	-3.191	-0.001935	606.3703052098949	148.27	2.4393	146.84	145.43	147.87	-1.4351					149	49	5	0	0	0	0.7246	1	14493	14493		20.837	2.5751	1	591330			20074	7829	16374	16398	22213	22213					0.13158805154057518
IPKSSLITPTA	11	Unmodified	_IPKSSLITPTA_					0	0	0		PTPRZ1|p.E1817Nfs*9|1|0.49|ENSG00000106278|chr7:122038834-122038834|G/-|frameshift_variant;nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1	PTPRZ1|p.E1817Nfs*9|1|0.49|ENSG00000106278|chr7:122038834-122038834|G/-|frameshift_variant	PTPRZ1|p.E1817Nfs*9|1|0.49|ENSG00000106278|chr7:122038834-122038834|G/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.2161254882812	2	564.337164	1126.65977	0.24664	0.00013919	-2.6304	-0.0014844	-2.3838	-0.0013452	564.3354142026137	30.358	0.59499	30.358	30.136	30.731	0					22	11	3	0	0	0	0.025594	1	1138	1138		49.536	25.017	1	246580			20075	2539	16375	16399	22214	22214					0.10151140854372898
IPLAEVGALS	10	Unmodified	_IPLAEVGALS_					0	0	0			REV__ENST00000478553.1_1_20:4763389-4763467:-|nuORF	REV__ENST00000478553.1_1_20:4763389-4763467:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.2833251953125	2	485.2844	968.554247	0.7704	0.00037386	-3.6213	-0.0017574	-2.8509	-0.0013835	485.28250543597454	33.895	1.5942	31.106	30.706	32.301	-2.7881					60	31	3	0	0	0	0.71192	1	981	981		29.15	4.9468	1	135770	+		20076	26416	16376	16400	22215	22215					0.06871224728752168
IPLALLLVLW	10	Unmodified	_IPLALLLVLW_					0	0	0			REV__ENSG00000204518|ENST00000376221|AADACL4	REV__ENSG00000204518|ENST00000376221|AADACL4	MULTI-MSMS	OvCa9_classI_Rep2	2	575.880859375	2	575.883553	1149.75255	0.38494	0.00022168	-4.0542	-0.0023347	-3.6693	-0.0021131	575.8811011364741	129.09	1.384	128.87	128.43	129.81	-0.22697					68	27	4	0	0	0	0.73286	2	12658	12658;12665		26.796	2.5934	1	149030	+		20077	23163	16377	16401	22216;22217	22216					0.18366690378411477
IPLALLLVLW	10	Unmodified	_IPLALLLVLW_					0	0	0			REV__ENSG00000204518|ENST00000376221|AADACL4	REV__ENSG00000204518|ENST00000376221|AADACL4	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8804321289062	2	575.883553	1149.75255	-0.33635	-0.0001937	-3.3539	-0.0019315	-3.6902	-0.0021251	575.8816146863785	130.37	1.3721	129.25	128.83	130.21	-1.1121					69	27	4	0	0	0	0.73286	1	10361	10361		26.796	0.10319	1	151570	+		20078	23163	16377	16401	22218	22218					0.18366690378411477
IPLGVNKI	8	Unmodified	_IPLGVNKI_					0	0	0		tr|A0A7D6VVP4|A0A7D6VVP4_9CLOT2-iminoacetatesynthaseThiHOS=ClostridiumintestinaleOX=36845GN=thiHPE=4SV=1	tr|A0A7D6VVP4|A0A7D6VVP4_9CLOT2-iminoacetatesynthaseThiHOS=ClostridiumintestinaleOX=36845GN=thiHPE=4SV=1	tr|A0A7D6VVP4|A0A7D6VVP4_9CLOT2-iminoacetatesynthaseThiHOS=ClostridiumintestinaleOX=36845GN=thiHPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	427.28216552734375	2	427.278921	852.543289	1.4468	0.00061819	1.073	0.00045847	2.5198	0.0010767	427.2794060728742	144.32	0.53783	144.32	144.06	144.6	0					16	10	2	0	0	0	0.73288	1	16864	16864		35.201	1.6851	1	48702			20079	35230	16378	16402	22219	22219					0.11111867145120868
IPLIIILPNK	10	Unmodified	_IPLIIILPNK_					0	0	0		tr|A0A7D6ZSU6|A0A7D6ZSU6_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_17445PE=3SV=1	tr|A0A7D6ZSU6|A0A7D6ZSU6_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_17445PE=3SV=1	tr|A0A7D6ZSU6|A0A7D6ZSU6_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_17445PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.2919311523438	2	567.38646	1132.75837	-0.23281	-0.00013209	-2.2483	-0.0012757	-2.4811	-0.0014077	567.3851361938594	38.937	0.26765	38.937	38.75	39.017	0					9	5	2	0	0	0	0.026982	1	2251	2251		6.3127	0	1	59535			20080	35744	16379	16403	22220	22220					0.19729788890072086
IPLIKSTK	8	Unmodified	_IPLIKSTK_					0	0	0		tr|A0A7D6VZ04|A0A7D6VZ04_9CLOTFlotillin-likeproteinFloAOS=ClostridiumintestinaleOX=36845GN=floAPE=3SV=1	tr|A0A7D6VZ04|A0A7D6VZ04_9CLOTFlotillin-likeproteinFloAOS=ClostridiumintestinaleOX=36845GN=floAPE=3SV=1	tr|A0A7D6VZ04|A0A7D6VZ04_9CLOTFlotillin-likeproteinFloAOS=ClostridiumintestinaleOX=36845GN=floAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.7626037597656	2	450.299853	898.585153	0.18061	8.1331E-05	-0.5256	-0.00023668	-0.34498	-0.00015535	450.2994778189506	58.744	0.36	58.744	58.572	58.932	0					11	8	2	0	0	0	0.028476	1	5023	5023		25.45	8.0852	1	129670			20081	35346	16380	16404	22221	22221					0.13180422833647754
IPLKTLPAN	9	Unmodified	_IPLKTLPAN_					0	0	0			REV__nc|ENSG00000139613|Q8TAQ2-2|SMARCC2	REV__nc|ENSG00000139613|Q8TAQ2-2|SMARCC2	MULTI-MSMS	OvCa9_classI_Rep2	2	483.8026428222656	2	483.80276	965.590967	-1.6747	-0.00081021	1.7588	0.00085092	0.084144	4.0709E-05	483.8034927033824	118.88	1.0877	118.73	118.33	119.42	-0.14755					50	21	3	0	0	0	0.68424	1	11424	11424		21.96	0.25755	1	102160	+		20082	19621	16381	16405	22222	22222					0.10679521345332432
IPLLYKKM	8	Unmodified	_IPLLYKKM_					0	0	0			REV__ENSG00000117594|ENST00000367027|HSD11B1	REV__ENSG00000117594|ENST00000367027|HSD11B1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.75799560546875	2	503.311906	1004.60926	-1.1696	-0.00058868	-2.7894	-0.001404	-3.9591	-0.0019926	503.3073322412655	53.126	0.64921	49.918	49.602	50.252	-3.208					17	12	3	0	0	0	0.028476	1	3259	3259		23.037	1.3344	1	10738	+		20083	18359	16382	16406	22223	22223					0.10713939995673627
IPLPIRNKTLS	11	Unmodified	_IPLPIRNKTLS_					0	0	0		ENSG00000102805|ENST00000377453|CLN5	ENSG00000102805|ENST00000377453|CLN5	ENSG00000102805|ENST00000377453|CLN5	MULTI-MSMS	OvCa9_classI_Rep2	2	626.3910522460938	2	626.392805	1250.77106	-5.6586	-0.0035445	-3.473	-0.0021755	-9.1316	-0.00572	626.8920656002647	163.54	1.1058	163.31	162.97	164.08	-0.22697					56	36	2	0	0	0	0.70865	1	16671	16671		26.693	7.5894	1	65883			20084	2256	16383	16407	22224	22224					0.15570200282331825
IPLPIRNKTLS	11	Unmodified	_IPLPIRNKTLS_					0	0	0		ENSG00000102805|ENST00000377453|CLN5	ENSG00000102805|ENST00000377453|CLN5	ENSG00000102805|ENST00000377453|CLN5	MULTI-MSMS	OvCa9_classI_Rep3	3	626.389892578125	2	626.392805	1250.77106	-6.1325	-0.0038414	-2.9926	-0.0018746	-9.1252	-0.0057159	626.3911365928932	165.03	1.5192	163.62	163.01	164.52	-1.4083					77	54	2	0	0	0	0.72466	1	14394	14394		19.997	4.355	1	34340			20085	2256	16383	16407	22225	22225					0.15570200282331825
IPLPIRNKTLS	11	Unmodified	_IPLPIRNKTLS_					0	0	0		ENSG00000102805|ENST00000377453|CLN5	ENSG00000102805|ENST00000377453|CLN5	ENSG00000102805|ENST00000377453|CLN5	MULTI-MSMS	OvCa9_classI_Rep4_	4	626.3932495117188	2	626.392805	1250.77106	-6.4307	-0.0040282	-1.9288	-0.0012082	-8.3595	-0.0052363	626.3917403131105	164.9	1.089	163.26	163.01	164.09	-1.6405					49	38	2	0	0	0	0.72459	1	16252	16252		20.947	4.2295	1	33483			20086	2256	16383	16407	22226	22226					0.15570200282331825
IPLPTVII	8	Unmodified	_IPLPTVII_					0	0	0			REV__ENST00000569912.1_1_22:40439522-40440098:-|nuORF	REV__ENST00000569912.1_1_22:40439522-40440098:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	433.6764221191406	2	433.291497	864.568441	2.9845	0.0012932	-3.6216	-0.0015692	-0.63709	-0.00027605	433.28990292717526	94.549	0.38591	94.549	94.39	94.776	0					14	8	2	0	0	0	0.028476	1	10297	10297		8.8223	0	1	183910	+		20087	27728	16384	16408	22227	22227					0.13073921947693634
IPLRGIFQG	9	Unmodified	_IPLRGIFQG_					0	0	0		nc|ENSG00000197530|Q96AX9-9|MIB2;ENST00000511502.5_1_1:1550926-1563560:+|nuORF;nc|ENSG00000197530|Q96AX9-10|MIB2;nc|ENSG00000197530|Q96AX9-8|MIB2;nc|ENSG00000197530|Q96AX9-7|MIB2;nc|ENSG00000197530|Q96AX9-4|MIB2;ENSG00000197530|ENST00000355826|MIB2;ENST00000507229.5_1_1:1551767-1563881:+|nuORF;nc|ENSG00000197530|Q96AX9-6|MIB2;nc|ENSG00000197530|Q96AX9-5|MIB2;nc|ENSG00000197530|Q96AX9-3|MIB2	nc|ENSG00000197530|Q96AX9-9|MIB2	nc|ENSG00000197530|Q96AX9-9|MIB2	MULTI-MSMS	OvCa9_classI_Rep3	3	500.7977600097656	2	500.800552	999.58655	-4.5773	-0.0022923	0.17322	8.675E-05	-4.4041	-0.0022056	500.8005489314557	149.34	2.1117	148.39	147.7	149.81	-0.9512					96	41	4	0	0	0	0.6653	1	12667	12667		24.203	3.7209	1	278740			20088	8718	16385	16409	22228	22228					0.08674056922438922
IPLRRGRPGG	10	Unmodified	_IPLRRGRPGG_					0	0	0			REV__ENST00000487411.5_1_16:31044934-31045651:+|nuORF	REV__ENST00000487411.5_1_16:31044934-31045651:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	539.83251953125	2	539.833249	1077.65194	-3.7174	-0.0020067	1.8285	0.00098706	-1.8889	-0.0010197	539.83416939196	149.54	1.4287	149.32	148.92	150.35	-0.22697					60	28	3	0	0	0	0.76627	1	15186	15186		23.042	2.5607	1	108190	+		20089	26601	16386	16410	22229	22229					0.11622471168129778
IPLSKIKTL	9	Unmodified	_IPLSKIKTL_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5-VWA3B|1|fusion	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	OvCa9_classI_Rep2	2	506.84368896484375	2	506.841885	1011.66922	-0.91712	-0.00046484	-0.19993	-0.00010133	-1.1171	-0.00056617	506.84163539338005	76.031	1.2048	74.177	73.938	75.143	-1.854					68	22	4	0	0	0	0.1243	1	6283	6283		90.601	41.159	1	430250			20090	1607	16387	16411	22230	22230					0.16384953930560187
IPLSKIKTL	9	Unmodified	_IPLSKIKTL_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5-VWA3B|1|fusion	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	OvCa9_classI_Rep3	3	506.845703125	2	506.841885	1011.66922	-1.2737	-0.00064556	-0.065446	-3.3171E-05	-1.3391	-0.00067873	506.8420014938054	76.379	1.2556	74.008	73.773	75.028	-2.3715					67	23	4	0	0	0	0.10502	2	3951	3944;3951		95.815	21.56	1	394370			20091	1607	16387	16411	22231;22232	22232					0.16384953930560187
IPLSKLLFPSL	11	Unmodified	_IPLSKLLFPSL_					0	0	0		tr|A0A553STH6|A0A553STH6_NIACILacIfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_05025PE=4SV=1	tr|A0A553STH6|A0A553STH6_NIACILacIfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_05025PE=4SV=1	tr|A0A553STH6|A0A553STH6_NIACILacIfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_05025PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	614.3845825195312	2	614.389199	1226.76385	-5.2638	-0.003234	-1.3389	-0.00082259	-6.6027	-0.0040566	614.3881829227306	157.6	1.278	156.06	155.71	156.98	-1.545					89	35	4	0	0	0	0.72479	1	15581	15581		18.262	0	1	332270			20092	34489	16388	16412	22233	22233					0.15953467681879374
IPLSPVCVRED	11	Unmodified	_IPLSPVCVRED_					0	0	0			REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|6|1|sense	REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|6|1|sense	MSMS	OvCa99_classI_Rep5	1	614.326171875	2	614.323731	1226.63291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.601	1	89.601	89.101	90.101	0								0	0	0	0.18042	1	9576	9576		31.53	0	1		+		20093	28215	16389	16413	22234	22234					0.028657089715579787
IPLTRPTIP	9	Unmodified	_IPLTRPTIP_					0	0	0		ENST00000457894.4_1_X:38660720-38664200:+|nuORF	ENST00000457894.4_1_X:38660720-38664200:+|nuORF	ENST00000457894.4_1_X:38660720-38664200:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	503.3253173828125	2	504.316035	1006.61752	0.21869	0.00011029	0.028771	1.451E-05	0.24747	0.0001248	504.3162168422856	112.89	0.44302	112.77	112.48	112.92	-0.12174					14	8	3	0	0	0	0.027164	1	10683	10683		79.451	20.669	1	8931.9			20094	12133	16390	16414	22235	22235					0.11447210236656247
IPLTRPTIP	9	Unmodified	_IPLTRPTIP_					0	0	0		ENST00000457894.4_1_X:38660720-38664200:+|nuORF	ENST00000457894.4_1_X:38660720-38664200:+|nuORF	ENST00000457894.4_1_X:38660720-38664200:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	503.32568359375	2	504.316035	1006.61752	0.043156	2.1764E-05	0.76453	0.00038556	0.80769	0.00040733	504.3162688374244	113.94	0.82394	112.88	112.58	113.4	-1.055					18	15	2	0	0	0	0.027343	1	8363	8363		68.787	0	1	10416			20095	12133	16390	16414	22236	22236					0.11447210236656247
IPLVRSLI	8	Unmodified	_IPLVRSLI_					0	0	0		ENST00000521386.5_1_8:67958146-67958194:-|nuORF	ENST00000521386.5_1_8:67958146-67958194:-|nuORF	ENST00000521386.5_1_8:67958146-67958194:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	455.8065490722656	2	455.807845	909.601138	0.61352	0.00027965	-0.90475	-0.00041239	-0.29123	-0.00013274	455.80730478603016	115.59	1.2364	115.48	115.1	116.33	-0.11777					51	24	3	0	0	0	0.45246	1	11029	11029		82.305	8.3303	1	77399			20096	13121	16391	16415	22237	22237					0.14272129070570827
IPLYKGHGVP	10	Unmodified	_IPLYKGHGVP_					0	0	0		tr|A0A553SJ50|A0A553SJ50_NIACICarboxylesteraseOS=NialliacirculansOX=1397GN=CEQ21_16110PE=4SV=1	tr|A0A553SJ50|A0A553SJ50_NIACICarboxylesteraseOS=NialliacirculansOX=1397GN=CEQ21_16110PE=4SV=1	tr|A0A553SJ50|A0A553SJ50_NIACICarboxylesteraseOS=NialliacirculansOX=1397GN=CEQ21_16110PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.8312377929688	2	540.813659	1079.61277	-1.801	-0.000974	1.0164	0.00054969	-0.78459	-0.00042432	540.8148654078115	124.7	0.26003	123.31	123.13	123.39	-1.3908					7	4	2	0	0	0	0.026697	1	11820	11820		37.159	2.9866	1	95893			20097	33464	16392	16416	22238	22238					0.07614326093903401
IPMFKEVDSTL	11	Unmodified	_IPMFKEVDSTL_					0	0	0			REV__nc|ENSG00000151376|Q16798-2|ME3	REV__nc|ENSG00000151376|Q16798-2|ME3	MULTI-SECPEP	OvCa99_classI_Rep5	1	640.2844848632812	2	640.333764	1278.65297	2.0818	0.001333	1.9547	0.0012517	4.0365	0.0025847	641.3378960705983	108.68	0.86812	108.68	108.28	109.15	0					35	19	3	0	0	0	0.025746	1	12307	12307		77.318	10.356	1	113870	+		20098	20228	16393	16417	22239	22239					0.024794599114784432
IPMGKSMLV	9	Unmodified	_IPMGKSMLV_					0	0	0		ENSG00000167244|ENST00000416167|IGF2;chr11:2135529-2140857|279|69.0|0.32|7.76|-|ENST00000381389|INS-IGF2,IGF2;nc|ENSG00000167244|P01344-2|IGF2;nc|ENSG00000167244|P01344-3|IGF2;chr11:2140299-2140857|211|50.04|0.31|7.33|-|ENST00000434045|IGF2,IGF2	ENSG00000167244|ENST00000416167|IGF2	ENSG00000167244|ENST00000416167|IGF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.27099609375	2	488.271924	974.529295	0.041741	2.0381E-05	-1.2394	-0.00060515	-1.1976	-0.00058477	488.27130891605157	76.242	1.6718	73.303	72.449	74.121	-2.9389					67	34	5	0	0	0	0.31747	1	6026	6026		60.972	3.1607	1	449040			20099	288	16394	16418	22240	22240					0.041011303301957014
IPMGKSMLV	9	Unmodified	_IPMGKSMLV_					0	0	0		ENSG00000167244|ENST00000416167|IGF2;chr11:2135529-2140857|279|69.0|0.32|7.76|-|ENST00000381389|INS-IGF2,IGF2;nc|ENSG00000167244|P01344-2|IGF2;nc|ENSG00000167244|P01344-3|IGF2;chr11:2140299-2140857|211|50.04|0.31|7.33|-|ENST00000434045|IGF2,IGF2	ENSG00000167244|ENST00000416167|IGF2	ENSG00000167244|ENST00000416167|IGF2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	488.271924	974.529295	-1.0867	-0.00053062	-6.6793	-0.0032613	-7.766	-0.0037919	488.2684994522108	75.814	1.6034	73.442	73.059	74.663	-2.3715	0.069474	-0.0020653	NaN	60.972	70	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	540330			20100	288	16394	16418							0.041011303301957014
IPMRPLNNP	9	Unmodified	_IPMRPLNNP_					0	0	0		ENSG00000243414|ENST00000427199|TICAM2;nc|ENSG00000243414|Q86XR7-2|TICAM2	ENSG00000243414|ENST00000427199|TICAM2	ENSG00000243414|ENST00000427199|TICAM2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.2772216796875	2	526.289494	1050.56443	0.10375	5.4603E-05	-0.37076	-0.00019513	-0.267	-0.00014052	526.7897255871809	67.252	0.59558	63.762	63.492	64.087	-3.4902					12	11	2	0	0	0	0.027462	1	4964	4964		33.516	5.6333	1	15903			20101	9376	16395	16419	22241	22241					0.04117509182333379
IPNDNLNEI	9	Unmodified	_IPNDNLNEI_					0	0	0		tr|A0A7D6VRB7|A0A7D6VRB7_9CLOTV-typeATPsynthasealphachainOS=ClostridiumintestinaleOX=36845GN=atpAPE=3SV=1	tr|A0A7D6VRB7|A0A7D6VRB7_9CLOTV-typeATPsynthasealphachainOS=ClostridiumintestinaleOX=36845GN=atpAPE=3SV=1	tr|A0A7D6VRB7|A0A7D6VRB7_9CLOTV-typeATPsynthasealphachainOS=ClostridiumintestinaleOX=36845GN=atpAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.3011474609375	2	521.264196	1040.51384	-0.76714	-0.00039988	-0.75511	-0.00039361	-1.5222	-0.00079349	521.2616849312877	82.092	0.25359	79.796	79.684	79.938	-2.2963					8	4	3	0	0	0	0.027247	1	4615	4615		101.6	26.557	1	8786.4			20102	34912	16396	16420	22242	22242					-0.004797416616611372
IPNEIIHAL	9	Unmodified	_IPNEIIHAL_					0	0	0		HNRNPM|p.L411Sfs*117|1|0.08|ENSG00000099783|chr19:8485658-8485658|C/-|frameshift_variant;ENSG00000099783|ENST00000325495|HNRNPM	HNRNPM|p.L411Sfs*117|1|0.08|ENSG00000099783|chr19:8485658-8485658|C/-|frameshift_variant	HNRNPM|p.L411Sfs*117|1|0.08|ENSG00000099783|chr19:8485658-8485658|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.2981872558594	2	510.297842	1018.58113	-0.53274	-0.00027186	0.90332	0.00046096	0.37058	0.00018911	510.2978286567267	103.27	1.5164	101.07	100.52	102.03	-2.1994					64	28	4	0	0	0	0.10502	2	9322	9312;9322		95.815	18.969	1	444770			20103	1976	16397	16421	22243;22244	22244					0.07258333339939327
IPNEIIHAL	9	Unmodified	_IPNEIIHAL_					0	0	0		HNRNPM|p.L411Sfs*117|1|0.08|ENSG00000099783|chr19:8485658-8485658|C/-|frameshift_variant;ENSG00000099783|ENST00000325495|HNRNPM	HNRNPM|p.L411Sfs*117|1|0.08|ENSG00000099783|chr19:8485658-8485658|C/-|frameshift_variant	HNRNPM|p.L411Sfs*117|1|0.08|ENSG00000099783|chr19:8485658-8485658|C/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	510.297842	1018.58113	-1.2303	-0.00062781	1.4029	0.00071592	0.17267	8.8112E-05	510.29813689856746	101.8	1.2374	101.04	100.77	102	-0.764	-0.021913	0.00043481	NaN	95.815	64	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	353450			20104	1976	16397	16421							0.07258333339939327
IPNEIIHAL	9	Unmodified	_IPNEIIHAL_					0	0	0		HNRNPM|p.L411Sfs*117|1|0.08|ENSG00000099783|chr19:8485658-8485658|C/-|frameshift_variant;ENSG00000099783|ENST00000325495|HNRNPM	HNRNPM|p.L411Sfs*117|1|0.08|ENSG00000099783|chr19:8485658-8485658|C/-|frameshift_variant	HNRNPM|p.L411Sfs*117|1|0.08|ENSG00000099783|chr19:8485658-8485658|C/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	510.297842	1018.58113	-0.41557	-0.00021206	0.65636	0.00033494	0.24079	0.00012287	510.2977887833442	102.6	2.1966	101.08	100.84	103.04	-1.5211	0.01316	-0.00032715	NaN	95.815	87	41	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	472770			20105	1976	16397	16421							0.07258333339939327
IPNEKSLQL	9	Unmodified	_IPNEKSLQL_					0	0	0		ENSG00000106809|ENST00000375561|OGN	ENSG00000106809|ENST00000375561|OGN	ENSG00000106809|ENST00000375561|OGN	MULTI-MSMS	OvCa9_classI_Rep2	2	521.300048828125	2	521.300581	1040.58661	0.72816	0.00037959	-1.1456	-0.00059719	-0.41741	-0.0002176	521.2998997785178	81.654	1.6566	80.005	79.614	81.271	-1.6485					76	31	3	0	0	0	0.11322	3	6960	6936;6941;6960		93.598	11.509	1	726440			20106	2575	16398	16422	22245;22246;22247	22247					0.06794012131763338
IPNEKSLQL	9	Unmodified	_IPNEKSLQL_					0	0	0		ENSG00000106809|ENST00000375561|OGN	ENSG00000106809|ENST00000375561|OGN	ENSG00000106809|ENST00000375561|OGN	MULTI-MSMS	OvCa9_classI_Rep3	3	521.3013305664062	2	521.300581	1040.58661	-0.85731	-0.00044691	0.17995	9.3807E-05	-0.67736	-0.00035311	521.3005681332529	82.26	1.3981	79.964	79.584	80.982	-2.2963					86	27	5	0	0	0	0.094791	3	4620	4620;4633;4640		98.582	12.983	1	1573400			20107	2575	16398	16422	22248;22249;22250	22248					0.06794012131763338
IPNEKSLQL	9	Unmodified	_IPNEKSLQL_					0	0	0		ENSG00000106809|ENST00000375561|OGN	ENSG00000106809|ENST00000375561|OGN	ENSG00000106809|ENST00000375561|OGN	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.301513671875	2	521.300581	1040.58661	-0.85173	-0.00044401	0.17163	8.9471E-05	-0.6801	-0.00035454	521.3005253911093	82.568	1.8052	79.885	79.538	81.343	-2.6829					77	36	4	0	0	0	0.094791	2	6829	6829;6842		98.582	5.44	1	1239900			20108	2575	16398	16422	22251;22252	22251					0.06794012131763338
IPNETVVVNVD	11	Unmodified	_IPNETVVVNVD_					0	0	0		CON__ENSEMBL:ENSBTAP00000037665	CON__ENSEMBL:ENSBTAP00000037665	CON__ENSEMBL:ENSBTAP00000037665	MULTI-MSMS	OvCa99_classI_Rep5	1	599.8207397460938	2	599.819335	1197.62412	2.6414	0.0015844	-1.1042	-0.00066231	1.5372	0.00092204	599.8185631715913	106.34	1.3473	106.34	105.97	107.31	0					92	30	7	0	0	0	0.5466	1	11974	11974		49.536	0	1	10769000		+	20109	609	16399	16423	22253	22253					0.033210586067070835
IPNFYIKIKTE	11	Unmodified	_IPNFYIKIKTE_					0	0	0		tr|A0A553SRX1|A0A553SRX1_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_01960PE=3SV=1	tr|A0A553SRX1|A0A553SRX1_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_01960PE=3SV=1	tr|A0A553SRX1|A0A553SRX1_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_01960PE=3SV=1	MSMS	OvCa9_classI_Rep3	3	455.92822265625	3	455.930739	1364.77039	NaN	NaN	NaN	NaN	NaN	NaN	NaN	158.28	1	157.02	156.52	157.52	-1.267								0	0	0	0.19474	1	13658	13658		18.531	4.445	1				20110	34307	16400	16424	22254	22254					0.10259360842610477
IPNIVCHL	8	Unmodified	_IPNIVCHL_					0	0	0			REV__ENSG00000166856|ENST00000300098|GPR182	REV__ENSG00000166856|ENST00000300098|GPR182	MULTI-MSMS	OvCa99_classI_Rep5	1	454.7552795410156	2	454.754756	907.494958	1.9628	0.00089257	-3.1004	-0.0014099	-1.1376	-0.00051734	454.753179123627	134.9	0.43234	134.9	134.7	135.13	0					16	9	2	0	0	0	0.68312	1	15710	15710		46.766	7.9603	1	101600	+		20111	21227	16401	16425	22255	22255					0.03751050233574915
IPNKLTADGI	10	Unmodified	_IPNKLTADGI_					0	0	0			REV__nc|ENSG00000118705|P04844-2|RPN2	REV__nc|ENSG00000118705|P04844-2|RPN2	MULTI-MSMS	OvCa9_classI_Rep3	3	521.3011474609375	2	521.300581	1040.58661	-0.85731	-0.00044691	0.17995	9.3807E-05	-0.67736	-0.00035311	521.3005681332529	82.26	1.3981	79.964	79.584	80.982	-2.2963					86	27	5	0	0	0	0.19075	1	4626	4626		95.815	2.2176	1	1573400	+		20112	18412	16402	16426	22256	22256					0.06794012131740601
IPNQLIRLN	9	Unmodified	_IPNQLIRLN_					0	0	0			REV__ENSG00000123094|ENST00000689635|RASSF8	REV__ENSG00000123094|ENST00000689635|RASSF8	MULTI-MSMS	OvCa9_classI_Rep3	3	540.832763671875	2	540.82984	1079.64513	2.013	0.0010887	0.75549	0.00040859	2.7684	0.0014973	540.8302826822948	124.41	3.5435	123.37	123.03	126.57	-1.0377					194	67	5	0	0	0	0.44294	1	9634	9634		47.916	3.3845	1	8697600	+		20113	18623	16403	16427	22257	22257					0.10849113496919927
IPNRILDIL	9	Unmodified	_IPNRILDIL_					0	0	0		nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;nc|ENSG00000104093|Q8TDJ6-2|DMXL2	nc|ENSG00000104093|Q8TDJ6|DMXL2	nc|ENSG00000104093|Q8TDJ6|DMXL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.2681274414062	2	533.834591	1065.65463	2.329	0.0012433	-2.8027	-0.0014962	-0.4737	-0.00025288	533.8332173707709	134.01	0.84088	132.48	132.24	133.08	-1.5257					34	16	3	0	0	0	0.027462	1	12944	12944		56.721	1.9447	1	34130			20114	2352	16404	16428	22258	22258					0.12442881782430959
IPPEARRLI	9	Unmodified	_IPPEARRLI_					0	0	0		nc|ENSG00000085185|Q5H9F3-4|BCORL1;ENSG00000085185|ENST00000540052|BCORL1	nc|ENSG00000085185|Q5H9F3-4|BCORL1	nc|ENSG00000085185|Q5H9F3-4|BCORL1	MULTI-SECPEP	OvCa9_classI_Rep2	2	532.8081665039062	2	532.832383	1063.65021	-1.6106	-0.00085817	1.1635	0.00061995	-0.44708	-0.00023822	532.8328344934871	75.871	0.62222	74.017	73.739	74.361	-1.854					17	11	2	0	0	0	0.027462	1	6297	6297		30.504	5.0535	1	16278			20115	1723	16405	16429	22259	22259					0.1209341735950602
IPPEARRLI	9	Unmodified	_IPPEARRLI_					0	0	0		nc|ENSG00000085185|Q5H9F3-4|BCORL1;ENSG00000085185|ENST00000540052|BCORL1	nc|ENSG00000085185|Q5H9F3-4|BCORL1	nc|ENSG00000085185|Q5H9F3-4|BCORL1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	532.832383	1063.65021	-1.4007	-0.00074634	1.6559	0.00088231	0.25518	0.00013597	532.83317092799	76.884	0.48252	73.945	73.738	74.22	-2.9389	-0.03575	7.9933E-05	NaN	30.504	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29245			20116	1723	16405	16429							0.1209341735950602
IPPFLKIW	8	Unmodified	_IPPFLKIW_					0	0	0			REV__nc|ENSG00000091181|Q01344-5|IL5RA	REV__nc|ENSG00000091181|Q01344-5|IL5RA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.7624816894531	2	507.312764	1012.61097	-0.68753	-0.0003488	-2.6946	-0.001367	-3.3821	-0.0017158	507.8134292618783	128.03	0.52527	126.59	126.29	126.81	-1.4357					11	9	2	0	0	0	0.028476	1	12205	12205		29.842	1.5873	1	15011	+		20117	17246	16406	16430	22260	22260					0.10517317075937171
IPPIIPWSG	9	Unmodified	_IPPIIPWSG_					0	0	0			REV__tr|A0A553SHX6|A0A553SHX6_NIACINADHoxidaseOS=NialliacirculansOX=1397GN=CEQ21_13800PE=3SV=1	REV__tr|A0A553SHX6|A0A553SHX6_NIACINADHoxidaseOS=NialliacirculansOX=1397GN=CEQ21_13800PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.24609375	2	490.284203	978.553853	-0.21512	-0.00010547	-3.2176	-0.0015776	-3.4327	-0.001683	490.28239059468905	63.047	0.52951	59.572	59.339	59.868	-3.475					17	10	2	0	0	0	0.027462	1	4435	4435		33.516	4.366	1	33682	+		20118	29850	16407	16431	22261	22261					0.06371849799563734
IPPKPVRLF	9	Unmodified	_IPPKPVRLF_					0	0	0		nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;ENST00000465814.5_1_11:72423956-72425365:-|nuORF	nc|ENSG00000186635|Q96P48-3|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.8294067382812	2	533.84222	1065.66989	-2.0108	-0.0010735	-1.4854	-0.00079298	-3.4962	-0.0018664	533.8412380679783	55.147	1.0477	52.333	51.772	52.82	-2.8139					37	20	2	0	0	0	0.027456	1	3862	3862		38.806	10.924	1	43346			20119	8350	16408	16432	22262	22262					0.1396779337026146
IPPLLTTT	8	Unmodified	_IPPLLTTT_					0	0	0			REV__ENSG00000056736|ENST00000288167|IL17RB	REV__ENSG00000056736|ENST00000288167|IL17RB	MULTI-MSMS	OvCa9_classI_Rep2	2	428.2617492675781	2	428.262936	854.51132	-2.1797	-0.00093349	-0.96416	-0.00041291	-3.1439	-0.0013464	428.2624599299376	144.02	1.6837	143.79	143.2	144.88	-0.22697					114	33	5	0	0	0	0.74595	1	14525	14525		14.664	2.4572	1	330270	+		20120	16718	16409	16433	22263	22263					0.07824454671310832
IPPLWGAERN	10	Unmodified	_IPPLWGAERN_					0	0	0			REV__tr|A0A553SNF6|A0A553SNF6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24375PE=4SV=1	REV__tr|A0A553SNF6|A0A553SNF6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24375PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	575.83837890625	2	576.811648	1151.60874	-0.63046	-0.00036366	-0.43129	-0.00024877	-1.0617	-0.00061243	576.8112982298524	123.13	0.88741	122.91	122.66	123.55	-0.21803					37	17	3	0	0	0	0.02725	1	11922	11922		15.642	0	1	64678	+		20121	30417	16410	16434	22264	22264					0.03900236600179596
IPPRDALEQ	9	Unmodified	_IPPRDALEQ_					0	0	0			REV__ENSG00000073067|ENST00000308919|CYP2W1	REV__ENSG00000073067|ENST00000308919|CYP2W1	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.822265625	2	519.782556	1037.55056	1.2857	0.0006683	3.554	0.0018473	4.8398	0.0025156	519.7856262281505	133.42	0.60764	133.42	133.35	133.96	0					15	12	2	0	0	0	0.027462	1	15566	15566		23.042	10.836	1	192340	+		20122	16931	16411	16435	22265	22265					0.033285549548736526
IPPRPRVPVY	10	Unmodified	_IPPRPRVPVY_					0	0	0			REV__nc|ENSG00000136715|Q9H0E3-2|SAP130	REV__nc|ENSG00000136715|Q9H0E3-2|SAP130	MULTI-MSMS	OvCa9_classI_Rep2	2	597.3562622070312	2	597.361308	1192.70806	-5.0217	-0.0029997	0.45711	0.00027306	-4.5646	-0.0027267	597.3613502692024	157	0.93945	156.78	156.54	157.48	-0.22696					63	26	4	0	0	0	0.85907	1	15967	15967		11.511	0	1	80526	+		20123	19400	16412	16436	22266	22266					0.11941679284950624
IPPSELQIGLK	11	Unmodified	_IPPSELQIGLK_					0	0	0		ENST00000568857.5_3_16:84164853-84177949:-|nuORF	ENST00000568857.5_3_16:84164853-84177949:-|nuORF	ENST00000568857.5_3_16:84164853-84177949:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	597.8564453125	2	597.858264	1193.70197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.3	1	147.86	147.36	148.36	-1.4344								0	0	0	0.19441	1	14724	14724		31.53	3.6476	1				20124	13874	16413	16437	22267	22267					0.11287116262769814
IPPYNPILS	9	Unmodified	_IPPYNPILS_					0	0	0			REV__HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|149|2|anti-sense	REV__HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|149|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.7626953125	2	507.286943	1012.55933	0.77877	0.00039506	-3.763	-0.0019089	-2.9842	-0.0015138	507.285074938352	126.99	0.62591	125.92	125.6	126.22	-1.0715					17	11	3	0	0	0	0.027462	1	9954	9954		27.882	0	1	11473	+		20125	28290	16414	16438	22268	22268					0.05355528591371694
IPQAAKVNMT	10	Oxidation (M)	_IPQAAKVNM(Oxidation (M))T_		IPQAAKVNM(1)T		IPQAAKVNM(51)T	0	0	1		ENSG00000100592|ENST00000360909|DAAM1;nc|ENSG00000100592|Q9Y4D1|DAAM1	ENSG00000100592|ENST00000360909|DAAM1	ENSG00000100592|ENST00000360909|DAAM1	MULTI-MSMS	OvCa9_classI_Rep2	2	544.7914428710938	2	544.792066	1087.56958	-0.71187	-0.00038782	0.54953	0.00029938	-0.16235	-8.8445E-05	544.79222686285	32.37	1.6392	29.661	29.382	31.021	-2.7097					66	32	3	0	0	0	0.52321	1	1061	1061		51.335	12.529	1	151030			20126	2087	16415	16439	22269	22269		74			0.02929768254307419
IPQAKGVVN	9	Unmodified	_IPQAKGVVN_					0	0	0		nc|ENSG00000165209|Q96SI9-2|STRBP;ENSG00000165209|ENST00000348403|STRBP	nc|ENSG00000165209|Q96SI9-2|STRBP	nc|ENSG00000165209|Q96SI9-2|STRBP	MULTI-MSMS	OvCa9_classI_Rep3	3	463.27783203125	2	463.276909	924.539266	-0.58518	-0.0002711	0.43027	0.00019933	-0.15492	-7.1769E-05	463.27703196327946	74.974	2.0641	72.564	72.192	74.256	-2.4106					88	40	4	0	0	0	0.44294	1	3783	3783		47.916	0	1	616420			20127	6536	16416	16440	22270	22270					0.0739777765143117
IPQGGRGAIQF	11	Unmodified	_IPQGGRGAIQF_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B;SEC23B|p.N596Lfs*20|1|0.21|ENSG00000101310|chr20:18548647-18548648|-/TT|frameshift_variant;nc|ENSG00000100934|Q15436-2|SEC23A;ENSG00000100934|ENST00000307712|SEC23A	ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	OvCa9_classI_Rep2	2	572.3163452148438	2	572.317097	1142.61964	-0.47428	-0.00027144	-0.07201	-4.1213E-05	-0.54629	-0.00031265	572.3170517906899	81.027	1.9827	79.378	78.665	80.648	-1.6485					107	38	4	0	0	0	0.1183	9	6852	6840;6852;6857;6863;6870;6874;6880;6886;6894		93.195	29.66	1	1161300			20128	2163;2123	16417	16441	22271;22272;22273;22274;22275;22276;22277;22278;22279	22272					0.0540363897446241
IPQGGRGAIQF	11	Unmodified	_IPQGGRGAIQF_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B;SEC23B|p.N596Lfs*20|1|0.21|ENSG00000101310|chr20:18548647-18548648|-/TT|frameshift_variant;nc|ENSG00000100934|Q15436-2|SEC23A;ENSG00000100934|ENST00000307712|SEC23A	ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	OvCa9_classI_Rep3	3	572.3169555664062	2	572.317097	1142.61964	-1.0442	-0.00059763	0.57955	0.00033168	-0.46469	-0.00026595	572.3174629597875	81.555	2.5082	79.232	78.594	81.102	-2.3226					132	49	4	0	0	0	0.13159	9	4526	4526;4531;4537;4543;4548;4554;4560;4567;4575		90.37	28.914	1	2046800			20129	2163;2123	16417	16441	22280;22281;22282;22283;22284;22285;22286;22287;22288	22280					0.0540363897446241
IPQGGRGAIQF	11	Unmodified	_IPQGGRGAIQF_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B;SEC23B|p.N596Lfs*20|1|0.21|ENSG00000101310|chr20:18548647-18548648|-/TT|frameshift_variant;nc|ENSG00000100934|Q15436-2|SEC23A;ENSG00000100934|ENST00000307712|SEC23A	ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	OvCa9_classI_Rep4_	4	572.3175048828125	2	572.317097	1142.61964	-0.96759	-0.00055377	0.19768	0.00011314	-0.76991	-0.00044063	572.317201024022	81.94	2.4793	79.258	78.571	81.05	-2.6829					126	50	4	0	0	0	0.092746	7	6739	6727;6739;6752;6764;6776;6789;6802		98.629	29.002	1	1832300			20130	2163;2123	16417	16441	22289;22290;22291;22292;22293;22294;22295	22290					0.0540363897446241
IPQKPPTALV	10	Unmodified	_IPQKPPTALV_					0	0	0			REV__ENSG00000164327|ENST00000357387|RICTOR	REV__ENSG00000164327|ENST00000357387|RICTOR	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.327880859375	2	532.329142	1062.64373	-0.29974	-0.00015956	-2.4984	-0.00133	-2.7981	-0.0014895	532.3276684733884	32.766	0.89629	30.071	29.853	30.75	-2.6954					32	17	3	0	0	0	0.7759	1	818	818		21.96	0	1	51388	+		20131	20977	16418	16442	22296	22296					0.11491479408118721
IPQKQREITL	10	Unmodified	_IPQKQREITL_					0	0	0		DDX21|p.V637*|1|0.26|ENSG00000165732|chr10:68978848-68978848|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21	DDX21|p.V637*|1|0.26|ENSG00000165732|chr10:68978848-68978848|G/-|frameshift_variant	DDX21|p.V637*|1|0.26|ENSG00000165732|chr10:68978848-68978848|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	409.24615478515625	3	409.24695	1224.71902	0.47988	0.00019639	-0.47505	-0.00019441	0.0048359	1.9791E-06	409.2467621212051	60.008	1.3036	57.237	56.672	57.976	-2.7702					78	24	4	0	0	0	0.38315	5	4403	4381;4398;4403;4415;4422		70.816	24.359	1	597550			20132	718	16419	16443	22297;22298;22299;22300;22301	22299					0.11565036868546485
IPQKQREITL	10	Unmodified	_IPQKQREITL_					0	0	0		DDX21|p.V637*|1|0.26|ENSG00000165732|chr10:68978848-68978848|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21	DDX21|p.V637*|1|0.26|ENSG00000165732|chr10:68978848-68978848|G/-|frameshift_variant	DDX21|p.V637*|1|0.26|ENSG00000165732|chr10:68978848-68978848|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	409.24822998046875	3	409.24695	1224.71902	1.239	0.00050705	-1.479	-0.00060529	-0.24006	-9.8245E-05	409.24634722106185	60.775	1.4236	57.345	56.848	58.272	-3.43					97	28	5	0	0	0	0.44722	3	4125	4113;4125;4148		61.691	12.225	1	1129100			20133	718	16419	16443	22302;22303;22304	22303					0.11565036868546485
IPQKQREITL	10	Unmodified	_IPQKQREITL_					0	0	0		DDX21|p.V637*|1|0.26|ENSG00000165732|chr10:68978848-68978848|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21	DDX21|p.V637*|1|0.26|ENSG00000165732|chr10:68978848-68978848|G/-|frameshift_variant	DDX21|p.V637*|1|0.26|ENSG00000165732|chr10:68978848-68978848|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	613.3683471679688	2	613.366787	1224.71902	0.52382	0.00032129	-0.83076	-0.00050956	-0.30693	-0.00018826	613.3662786581513	60.804	1.3739	57.374	56.898	58.272	-3.43					89	27	5	0	0	0	0.020094	4	4132	4120;4132;4142;4157		126.24	24.642	1	676760			20134	718	16419	16443	22305;22306;22307;22308	22306					0.11565036868546485
IPQLRSPLT	9	Unmodified	_IPQLRSPLT_					0	0	0			REV__nc|ENSG00000061273|Q8WUI4-3|HDAC7	REV__nc|ENSG00000061273|Q8WUI4-3|HDAC7	MULTI-MSMS	OvCa9_classI_Rep2	2	512.8103637695312	2	512.811116	1023.60768	-0.15487	-7.9419E-05	-0.46745	-0.00023971	-0.62232	-0.00031913	512.8108542790907	93.719	2.3712	92.619	92.123	94.494	-1.0995					128	46	6	0	0	0	0.074342	1	8387	8387		104.75	6.1646	1	1668800	+		20135	16743	16420	16444	22309	22309					0.09682022231265819
IPQLRSPLT	9	Unmodified	_IPQLRSPLT_					0	0	0			REV__nc|ENSG00000061273|Q8WUI4-3|HDAC7	REV__nc|ENSG00000061273|Q8WUI4-3|HDAC7	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.8118286132812	2	512.811116	1023.60768	-1.0634	-0.0005453	0.49931	0.00025605	-0.56405	-0.00028925	512.8113154033805	95.151	2.3582	92.683	92.26	94.618	-2.4685					122	46	4	0	0	0	0.21231	1	8346	8346		74.255	3.4388	1	2042500	+		20136	16743	16420	16444	22310	22310					0.09682022231265819
IPQPDLTKL	9	Unmodified	_IPQPDLTKL_					0	0	0		nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;PCBP2-AMHR2|6|fusion;PCBP2-AMHR2|4|fusion;PCBP2-AMHR2|7|fusion;PCBP2-AMHR2|5|fusion;PCBP2-AMHR2|1|fusion;PCBP2-AMHR2|3|fusion;PCBP2-AMHR2|2|fusion	nc|ENSG00000197111|Q15366-7|PCBP2;PCBP2-AMHR2|6|fusion	nc|ENSG00000197111|Q15366-7|PCBP2	MULTI-MSMS	OvCa9_classI_Rep2	2	512.8045654296875	2	512.8055	1023.59645	0.96769	0.00049623	-0.86044	-0.00044124	0.10725	5.4996E-05	512.8048988441653	129.99	1.0876	129.77	129.46	130.55	-0.22696					55	21	4	0	0	0	0.55588	1	12803	12803		37.159	1.5408	1	154290			20137	8677;15477	16421	16445	22311	22311					0.0855920013711966
IPQPWLPP	8	Unmodified	_IPQPWLPP_					0	0	0		ENSG00000196526|ENST00000420658|AFAP1;nc|ENSG00000196526|Q8N556|AFAP1;AFAP1-KCNIP4|1|fusion;AFAP1-KCNIP4|2|fusion;AFAP1|p.S124Yfs*3|1|0.09|ENSG00000196526|chr4:7843314-7843315|-/T|frameshift_variant	ENSG00000196526|ENST00000420658|AFAP1	ENSG00000196526|ENST00000420658|AFAP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.28277587890625	2	474.271096	946.527639	-1.4851	-0.00070433	-2.9553	-0.0014016	-4.4404	-0.0021059	474.2696437691795	88.46	1.1559	85.857	85.327	86.483	-2.6027					40	22	2	0	0	0	0.028476	1	7507	7507		31.579	0	1	183220			20138	8620	16422	16446	22312	22312					0.052235806280805264
IPQWPLLL	8	Unmodified	_IPQWPLLL_					0	0	0			REV__HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|34|1|sense	REV__HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|34|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.8296203613281	2	490.302396	978.590239	1.4292	0.00070075	-3.4911	-0.0017117	-2.0619	-0.001011	490.3006457196724	108.92	0.65607	108.92	108.71	109.37	0					26	14	3	0	0	0	0.028476	1	12350	12350		44.531	7.5026	1	195140	+		20139	28243	16423	16447	22313	22313					0.10008726696275971
IPRAALLPL	9	Unmodified	_IPRAALLPL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	OvCa9_classI_Rep2	2	482.3211975097656	2	482.32112	962.627687	0.3668	0.00017692	-0.69766	-0.0003365	-0.33086	-0.00015958	482.3206528422044	112.43	2.0239	112.3	111.98	114.01	-0.12174					104	40	5	0	0	0	0.071436	7	10654	10631;10636;10642;10648;10654;10660;10668		106.42	40.612	1	681590			20140	6630	16424	16448	22314;22315;22316;22317;22318;22319;22320	22318					0.14487817961901328
IPRAALLPL	9	Unmodified	_IPRAALLPL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	OvCa9_classI_Rep3	3	482.3204345703125	2	482.32112	962.627687	0.84383	0.000407	-1.2403	-0.00059824	-0.39651	-0.00019125	482.32039973806343	113.45	1.7723	112.37	112.01	113.78	-1.0753					105	34	5	0	0	0	0.098892	5	8351	8326;8333;8345;8351;8359		97.473	26.095	1	798060			20141	6630	16424	16448	22321;22322;22323;22324;22325	22324					0.14487817961901328
IPRAALLPL	9	Unmodified	_IPRAALLPL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.3207092285156	2	482.32112	962.627687	0.43906	0.00021177	-0.84183	-0.00040603	-0.40277	-0.00019426	482.32056847374173	113.85	1.8701	112.4	112.05	113.92	-1.4461					104	36	5	0	0	0	0.098892	4	10563	10539;10550;10563;10575		97.473	31.897	1	932630			20142	6630	16424	16448	22326;22327;22328;22329	22328					0.14487817961901328
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	OvCa9_classI_Rep2	2	538.8624877929688	2	538.863152	1075.71175	-0.23326	-0.0001257	-0.99858	-0.0005381	-1.2318	-0.00066379	538.862877379651	131.84	7.1203	131.62	131.3	138.42	-0.22697					401	145	6	0	0	0	0.050494	51	13047	12979;12982;12988;12993;12999;13005;13011;13017;13023;13029;13035;13041;13047;13053;13059;13065;13071;13077;13083;13089;13095;13101;13109;13115;13127;13132;13138;13144;13150;13155;13161;13167;13173;13180;13187;13199;13205;13211;13217;13222;13228;13234;13246;13252;13265;13278;13315;13327;13332;13554;13590		128.86	46.556	1	12803000			20143	6630	16425	16449	22330;22331;22332;22333;22334;22335;22336;22337;22338;22339;22340;22341;22342;22343;22344;22345;22346;22347;22348;22349;22350;22351;22352;22353;22354;22355;22356;22357;22358;22359;22360;22361;22362;22363;22364;22365;22366;22367;22368;22369;22370;22371;22372;22373;22374;22375;22376;22377;22378;22379;22380	22342					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	OvCa9_classI_Rep3	3	538.8626098632812	2	538.863152	1075.71175	0.50313	0.00027112	-1.3946	-0.0007515	-0.89148	-0.00048038	538.8625358740957	133.13	11.263	132	131.63	142.9	-1.1249					494	228	5	0	0	0	0.050494	47	10664	10648;10653;10658;10664;10670;10676;10682;10688;10694;10700;10706;10712;10718;10724;10736;10742;10748;10754;10766;10773;10779;10785;10791;10797;10803;10820;10838;10844;10850;10912;10918;10924;10932;10998;11020;11025;11039;11050;11064;11069;11160;11188;11194;11205;11212;11289;11295		128.86	46.556	1	10229000			20144	6630	16425	16449	22381;22382;22383;22384;22385;22386;22387;22388;22389;22390;22391;22392;22393;22394;22395;22396;22397;22398;22399;22400;22401;22402;22403;22404;22405;22406;22407;22408;22409;22410;22411;22412;22413;22414;22415;22416;22417;22418;22419;22420;22421;22422;22423;22424;22425;22426;22427	22384					0.17692349058802392
IPRAALLPLL	10	Unmodified	_IPRAALLPLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.8624877929688	2	538.863152	1075.71175	2.6703	0.0014389	-4.1829	-0.002254	-1.5125	-0.00081505	538.8612720845362	133.45	7.6689	131.93	131.41	139.08	-1.5257					434	157	6	0	0	0	0.092658	39	12953	12846;12857;12869;12881;12893;12905;12917;12929;12941;12953;12965;12977;12989;13001;13013;13025;13037;13049;13061;13074;13086;13110;13135;13147;13160;13172;13184;13196;13208;13231;13260;13271;13282;13293;13306;13333;13366;13426;13439		115.46	33.154	1	17348000			20145	6630	16425	16449	22428;22429;22430;22431;22432;22433;22434;22435;22436;22437;22438;22439;22440;22441;22442;22443;22444;22445;22446;22447;22448;22449;22450;22451;22452;22453;22454;22455;22456;22457;22458;22459;22460;22461;22462;22463;22464;22465;22466	22437					0.17692349058802392
IPRAALLPLLL	11	Unmodified	_IPRAALLPLLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	OvCa9_classI_Rep2	2	595.4053955078125	2	595.405184	1188.79581	-3.2474	-0.0019335	3.1968	0.0019034	-0.05051	-3.0074E-05	595.4069549535949	148.18	1.6013	147.95	147.62	149.22	-0.22697					84	31	4	0	0	0	0.22384	8	14969	14964;14969;14973;15003;15011;15017;15023;15029		76.774	15.717	1	246660			20146	6630	16426	16450	22467;22468;22469;22470;22471;22472;22473;22474	22468					0.20896880155714825
IPRAALLPLLL	11	Unmodified	_IPRAALLPLLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	OvCa9_classI_Rep3	3	595.4052734375	2	595.405184	1188.79581	-3.7371	-0.0022251	3.7133	0.0022109	-0.02382	-1.4183E-05	595.4073030705598	149.52	1.6605	148.57	148.15	149.81	-0.95119					91	32	4	0	0	0	0.18313	7	12659	12645;12653;12659;12665;12671;12679;12687		82.241	21.329	1	294470			20147	6630	16426	16450	22475;22476;22477;22478;22479;22480;22481	22477					0.20896880155714825
IPRAALLPLLL	11	Unmodified	_IPRAALLPLLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	595.4053955078125	2	595.405184	1188.79581	-2.2324	-0.0013292	2.261	0.0013462	0.028627	1.7045E-05	595.4064272340376	149.99	1.8022	148.55	148.12	149.93	-1.4344					91	39	4	0	0	0	0.1439	4	14808	14788;14808;14821;14833		87.754	36.419	1	315630			20148	6630	16426	16450	22482;22483;22484;22485	22483					0.20896880155714825
IPRAVASI	8	Unmodified	_IPRAVASI_					0	0	0		nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-3|RYR3;RYR3|p.L1996Rfs*16|1|0.04|ENSG00000198838|chr15:33696344-33696344|T/-|frameshift_variant	nc|ENSG00000198838|Q15413-2|RYR3	nc|ENSG00000198838|Q15413-2|RYR3	MULTI-MSMS	OvCa9_classI_Rep2	2	413.7604675292969	2	413.760895	825.507237	0.38136	0.00015779	-0.29332	-0.00012136	0.088043	3.6429E-05	413.7606632277241	94.764	1.4305	93.665	93.361	94.792	-1.0995					68	28	4	0	0	0	0.50674	1	8496	8496		76.847	0.072494	1	458180			20149	8886	16427	16451	22486	22486					0.08750409968274653
IPREADGIH	9	Unmodified	_IPREADGIH_					0	0	0		ENSG00000006607|ENST00000264042|FARP2	ENSG00000006607|ENST00000264042|FARP2	ENSG00000006607|ENST00000264042|FARP2	MULTI-MSMS	OvCa99_classI_Rep5	1	504.26739501953125	2	504.267073	1006.51959	0.14951	7.5394E-05	-0.62928	-0.00031733	-0.47977	-0.00024193	504.26676584805824	46.348	1.0516	46.348	45.979	47.03	0					62	23	4	0	0	0	0.31747	1	3288	3288		60.972	6.1956	1	8907700			20150	882	16428	16452	22487	22487					0.016594016406543233
IPRENAQISL	10	Unmodified	_IPRENAQISL_					0	0	0		nc|ENSG00000102524|Q9Y275-2|TNFSF13B;ENSG00000102524|ENST00000375887|TNFSF13B	nc|ENSG00000102524|Q9Y275-2|TNFSF13B	nc|ENSG00000102524|Q9Y275-2|TNFSF13B	MULTI-MSMS	OvCa9_classI_Rep2	2	570.8217163085938	2	570.822212	1139.62987	-0.29699	-0.00016953	-0.19491	-0.00011126	-0.4919	-0.00028079	570.8219755050607	80.686	1.9254	78.991	78.519	80.444	-1.6951					85	37	3	0	0	0	0.38315	1	6829	6829		70.816	0	1	552300			20151	2241	16429	16453	22488	22488					0.06564201909031908
IPRENAQISL	10	Unmodified	_IPRENAQISL_					0	0	0		nc|ENSG00000102524|Q9Y275-2|TNFSF13B;ENSG00000102524|ENST00000375887|TNFSF13B	nc|ENSG00000102524|Q9Y275-2|TNFSF13B	nc|ENSG00000102524|Q9Y275-2|TNFSF13B	MULTI-MSMS	OvCa9_classI_Rep3	3	570.8236083984375	2	570.822212	1139.62987	-0.84189	-0.00048057	0.42966	0.00024526	-0.41223	-0.00023531	570.8223479788066	81.337	1.9092	79.015	78.594	80.503	-2.3226					88	37	3	0	0	0	0.24109	2	4515	4502;4515		88.177	1.4896	1	1098200			20152	2241	16429	16453	22489;22490	22490					0.06564201909031908
IPRENAQISL	10	Unmodified	_IPRENAQISL_					0	0	0		nc|ENSG00000102524|Q9Y275-2|TNFSF13B;ENSG00000102524|ENST00000375887|TNFSF13B	nc|ENSG00000102524|Q9Y275-2|TNFSF13B	nc|ENSG00000102524|Q9Y275-2|TNFSF13B	MULTI-MSMS	OvCa9_classI_Rep4_	4	570.8233032226562	2	570.822212	1139.62987	-0.72263	-0.0004125	0.048318	2.7581E-05	-0.67432	-0.00038491	570.8221840841696	81.573	1.8468	78.862	78.494	80.341	-2.7106					65	37	2	0	0	0	0.36605	1	6710	6710		72.879	1.0018	1	1292800			20153	2241	16429	16453	22491	22491					0.06564201909031908
IPRFGLPLWI	10	Unmodified	_IPRFGLPLWI_					0	0	0		HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|47|1|sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|47|1|sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|47|1|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3682861328125	2	606.368601	1210.72265	-2.264	-0.0013728	3.8158	0.0023138	1.5517	0.00094093	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.81992	1	12379	12379		16.473	0.46637	1	205770			20154	14407	16430	16454	22492	22492					0.12571751433074496
IPRIATTIIT	10	Unmodified	_IPRIATTIIT_					0	0	0		ENST00000462770.5_1_3:133661447-133748739:-|nuORF;ENSG00000174640|ENST00000310926|SLCO2A1	ENST00000462770.5_1_3:133661447-133748739:-|nuORF	ENST00000462770.5_1_3:133661447-133748739:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	549.8126831054688	2	549.847699	1097.68084	1.0651	0.00058563	-1.7595	-0.00096748	-0.69447	-0.00038185	549.8464429912044	66.253	0.69604	63.557	63.368	64.064	-2.6958					20	13	2	0	0	0	0.026665	1	5124	5124		60.972	23.943	1	21444			20155	7479	16431	16455	22493	22493					0.1359115095388006
IPRLERILL	9	Unmodified	_IPRLERILL_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	OvCa9_classI_Rep2	2	561.8709106445312	2	561.871508	1121.72846	-0.013452	-7.558E-06	-0.52057	-0.0002925	-0.53403	-0.00030005	561.8710639589401	105.13	1.988	104.7	104.41	106.39	-0.43642					96	39	4	0	0	0	0.37135	1	9763	9763		54.776	3.4409	1	372210			20156	9513	16432	16456	22494	22494					0.1724684994474046
IPRPILVLL	9	Unmodified	_IPRPILVLL_					0	0	0		nc|ENSG00000059377|P24557-3|TBXAS1;ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-4|TBXAS1;nc|ENSG00000059377|P24557-2|TBXAS1;ENSG00000059377|ENST00000448866|TBXAS1	nc|ENSG00000059377|P24557-3|TBXAS1	nc|ENSG00000059377|P24557-3|TBXAS1	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3599243164062	2	517.360245	1032.70594	0.038556	1.9947E-05	-0.44941	-0.00023251	-0.41085	-0.00021256	517.3599133873521	135.24	1.9126	135.01	134.59	136.5	-0.22696					104	38	4	0	0	0	0.46377	2	13402	13402;13463		45.952	5.2906	1	602160			20157	14879	16433	16457	22495;22496	22495					0.1908925054710835
IPRPILVLL	9	Unmodified	_IPRPILVLL_					0	0	0		nc|ENSG00000059377|P24557-3|TBXAS1;ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-4|TBXAS1;nc|ENSG00000059377|P24557-2|TBXAS1;ENSG00000059377|ENST00000448866|TBXAS1	nc|ENSG00000059377|P24557-3|TBXAS1	nc|ENSG00000059377|P24557-3|TBXAS1	MULTI-MSMS	OvCa9_classI_Rep3	3	517.359375	2	517.360245	1032.70594	-0.63272	-0.00032734	0.17774	9.1954E-05	-0.45498	-0.00023539	517.3601946717101	136.63	2.1947	135.53	135.15	137.35	-1.1023					115	44	4	0	0	0	0.52083	1	11109	11109		40.573	1.7665	1	468020			20158	14879	16433	16457	22497	22497					0.1908925054710835
IPRPILVLL	9	Unmodified	_IPRPILVLL_					0	0	0		nc|ENSG00000059377|P24557-3|TBXAS1;ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-4|TBXAS1;nc|ENSG00000059377|P24557-2|TBXAS1;ENSG00000059377|ENST00000448866|TBXAS1	nc|ENSG00000059377|P24557-3|TBXAS1	nc|ENSG00000059377|P24557-3|TBXAS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.3602905273438	2	517.360245	1032.70594	1.8735	0.00096925	-2.5299	-0.0013089	-0.65645	-0.00033962	517.3588470360384	137.04	2.3917	135.5	135.08	137.47	-1.5437					132	51	5	0	0	0	0.44294	1	13324	13324		47.916	1.9636	1	756000			20159	14879	16433	16457	22498	22498					0.1908925054710835
IPRPLGQGPSR	11	Unmodified	_IPRPLGQGPSR_					0	0	0		nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1	nc|ENSG00000080546|Q9Y6P5|SESN1	nc|ENSG00000080546|Q9Y6P5|SESN1	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3405151367188	2	589.343646	1176.67274	-4.3129	-0.0025418	3.0093	0.0017735	-1.3036	-0.00076827	589.3453728975387	144.79	3.9151	143.81	141.71	145.63	-0.97299					242	78	5	0	0	0	0.71048	1	12039	12039		26.063	1.5442	1	192050			20160	14899	16434	16458	22499	22499					0.09147016757151505
IPRPVDGVEV	10	Unmodified	_IPRPVDGVEV_					0	0	0		ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	MULTI-MSMS	OvCa9_classI_Rep3	3	540.8060913085938	2	540.806031	1079.59751	-0.51269	-0.00027727	-0.19056	-0.00010306	-0.70325	-0.00038032	540.8056822718765	85.027	1.5891	82.806	82.398	83.987	-2.2204					66	29	3	0	0	0	0.28422	3	4975	4969;4975;4982		82.75	16.321	1	964840			20161	1288	16435	16459	22500;22501;22502	22501					0.060894145060501614
IPRPVDGVEV	10	Unmodified	_IPRPVDGVEV_					0	0	0		ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.8093872070312	2	540.806031	1079.59751	0.68008	0.00036779	1.5262	0.00082536	2.2063	0.0011932	540.8066886109204	85.264	1.5773	82.617	82.215	83.792	-2.6463					76	31	4	0	0	0	0.53807	1	7171	7171		49.536	5.1589	1	394320			20162	1288	16435	16459	22503	22503					0.060894145060501614
IPRPVDGVEV	10	Unmodified	_IPRPVDGVEV_					0	0	0		ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	540.806031	1079.59751	-1.6173	-0.00087466	1.3719	0.00074192	-0.24546	-0.00013275	540.8066082977463	84.152	1.7227	82.606	82.023	83.745	-1.5462	-0.07076	0.00031119	NaN	82.75	88	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	330420			20163	1288	16435	16459							0.060894145060501614
IPRQPSNDL	9	Unmodified	_IPRQPSNDL_					0	0	0		ENSG00000168743|ENST00000379987|NPNT;nc|ENSG00000168743|Q6UXI9-6|NPNT;nc|ENSG00000168743|Q6UXI9-3|NPNT	ENSG00000168743|ENST00000379987|NPNT	ENSG00000168743|ENST00000379987|NPNT	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.28125	2	520.28018	1038.54581	-0.18741	-9.7504E-05	0.46771	0.00024334	0.2803	0.00014583	520.2804054741918	59.353	1.3308	55.961	55.655	56.985	-3.392					45	26	2	0	0	0	0.14855	2	3971	3958;3971		85.161	13.865	1	781120			20164	6937	16436	16460	22504;22505	22505					0.028076708121261618
IPRSEWDIL	9	Unmodified	_IPRSEWDIL_					0	0	0		ENSG00000123505|ENST00000368885|AMD1	ENSG00000123505|ENST00000368885|AMD1	ENSG00000123505|ENST00000368885|AMD1	MULTI-MSMS	OvCa9_classI_Rep2	2	564.8057861328125	2	564.806031	1127.59751	-0.31264	-0.00017658	2.2019	0.0012437	1.8893	0.0010671	564.807441321003	94.488	1.7797	93.389	93.062	94.842	-1.0995					79	35	3	0	0	0	0.091859	1	8473	8473		99.375	3.1845	1	525730			20165	3600	16437	16461	22506	22506					0.038814145060541705
IPRSILMTTF	10	Oxidation (M)	_IPRSILM(Oxidation (M))TTF_		IPRSILM(1)TTF		IPRSILM(110)TTF	0	0	1		ENSG00000167986|ENST00000301764|DDB1;ENST00000414411.3_1_11:61081295-61081943:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8305053710938	2	597.831191	1193.64783	-0.46605	-0.00027862	0.17058	0.00010198	-0.29548	-0.00017665	597.8312065373308	107	1.5679	106.7	106.42	107.99	-0.30836					61	31	4	0	0	0	0.10592	3	9977	9977;9982;9995		112.11	44.614	1	482670			20166	6859	16438	16462	22507;22508;22509	22507		211			0.058752008395231314
IPRSILMTTF	10	Oxidation (M)	_IPRSILM(Oxidation (M))TTF_		IPRSILM(1)TTF		IPRSILM(84)TTF	0	0	1		ENSG00000167986|ENST00000301764|DDB1;ENST00000414411.3_1_11:61081295-61081943:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8304443359375	2	597.831191	1193.64783	1.3689	0.00081838	-1.488	-0.00088958	-0.1191	-7.1201E-05	597.8303106040128	108.02	1.8673	106.82	106.48	108.35	-1.1978					57	35	3	0	0	0	0.27679	2	7698	7693;7698		83.647	25.417	1	588140			20167	6859	16438	16462	22510;22511	22511		211			0.058752008395231314
IPRSILMTTF	10	Oxidation (M)	_IPRSILM(Oxidation (M))TTF_		IPRSILM(1)TTF		IPRSILM(83)TTF	0	0	1		ENSG00000167986|ENST00000301764|DDB1;ENST00000414411.3_1_11:61081295-61081943:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8323974609375	2	597.831191	1193.64783	-1.0626	-0.00063525	0.58512	0.0003498	-0.47748	-0.00028545	597.8315602022902	108.52	1.8484	106.8	106.52	108.37	-1.7256					66	35	4	0	0	0	0.28422	3	9935	9935;9945;9959		82.75	23.969	1	537180			20168	6859	16438	16462	22512;22513;22514	22512		211			0.058752008395231314
IPRSLEVIL	9	Unmodified	_IPRSLEVIL_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.3275756835938	2	520.329142	1038.64373	-0.25328	-0.00013179	-0.8811	-0.00045846	-1.1344	-0.00059025	520.3285963209634	116.13	1.1125	114.77	114.45	115.56	-1.3645					35	21	2	0	0	0	0.2422	1	10832	10832		69.628	5.4204	1	458700			20169	1548	16439	16463	22515	22515					0.12595479408128085
IPRSLGDTLY	10	Unmodified	_IPRSLGDTLY_					0	0	0		nc|ENSG00000187605|O43151-2|TET3;ENSG00000187605|ENST00000409262|TET3	nc|ENSG00000187605|O43151-2|TET3	nc|ENSG00000187605|O43151-2|TET3	MULTI-MSMS	OvCa9_classI_Rep2	2	567.8111572265625	2	567.811313	1133.60807	0.22441	0.00012742	-0.50774	-0.0002883	-0.28333	-0.00016088	567.8109861589273	113.4	1.1856	113.27	112.82	114.01	-0.12174					56	23	3	0	0	0	0.52439	1	10779	10779		51.193	7.0759	1	241960			20170	8416	16440	16464	22516	22516					0.04661397160475644
IPRSRLLGQP	10	Unmodified	_IPRSRLLGQP_					0	0	0		ENST00000483155.5_1_9:79007484-79008822:-|nuORF	ENST00000483155.5_1_9:79007484-79008822:-|nuORF	ENST00000483155.5_1_9:79007484-79008822:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	568.8465576171875	2	568.848564	1135.68258	0.54685	0.00031108	-4.2377	-0.0024106	-3.6909	-0.0020995	568.8459810585302	123.26	2.2433	121.89	120.96	123.2	-1.3666					118	44	3	0	0	0	0.47142	1	11658	11658		58.23	5.141	1	383340			20171	12583	16441	16465	22517	22517					0.12016204762517191
IPRTGIIAV	9	Unmodified	_IPRTGIIAV_					0	0	0			REV__ENST00000492153.1_1_1:161183142-161183728:+|nuORF	REV__ENST00000492153.1_1_1:161183142-161183728:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	470.3027038574219	2	470.302927	938.591301	1.3743	0.00064634	-1.4722	-0.00069238	-0.097879	-4.6033E-05	470.3021200674515	111.05	2.1632	109.95	109.12	111.29	-1.1038					107	42	4	0	0	0	0.27001	1	8022	8022		66.429	0.96389	1	319210	+		20172	26689	16442	16466	22518	22518					0.11954941065175717
IPRVVQEGDVL	11	Unmodified	_IPRVVQEGDVL_					0	0	0		nc|ENSG00000124587|Q13608-2|PEX6;nc|ENSG00000124587|Q13608-3|PEX6;ENSG00000124587|ENST00000304611|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	MULTI-MSMS	OvCa9_classI_Rep4_	4	612.8519897460938	2	612.85097	1223.68739	-0.19541	-0.00011976	-0.36542	-0.00022395	-0.56083	-0.0003437	612.8506796067662	96.019	0.91589	93.593	93.304	94.22	-2.4256					59	17	4	0	0	0	0.31995	1	8471	8471		66.962	10.528	1	462210			20173	3663	16443	16467	22519	22519					0.08449044114627213
IPRVVQEGDVL	11	Unmodified	_IPRVVQEGDVL_					0	0	0		nc|ENSG00000124587|Q13608-2|PEX6;nc|ENSG00000124587|Q13608-3|PEX6;ENSG00000124587|ENST00000304611|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	612.85097	1223.68739	-0.96939	-0.00059409	-0.9249	-0.00056683	-1.8943	-0.0011609	612.8501788343619	94.566	0.8838	93.466	93.165	94.048	-1.0995	-0.077026	1.4282E-05	NaN	66.962	51	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	358210			20174	3663	16443	16467							0.08449044114627213
IPRVVQEGDVL	11	Unmodified	_IPRVVQEGDVL_					0	0	0		nc|ENSG00000124587|Q13608-2|PEX6;nc|ENSG00000124587|Q13608-3|PEX6;ENSG00000124587|ENST00000304611|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	612.85097	1223.68739	0.71988	0.00044118	-1.1644	-0.00071359	-0.4445	-0.00027241	612.8502025646276	95.466	0.69896	93.571	93.261	93.96	-1.8956	0.027349	-0.00027924	NaN	66.962	49	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	512860			20175	3663	16443	16467							0.08449044114627213
IPSADRHKSKL	11	Unmodified	_IPSADRHKSKL_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	626.3626708984375	2	626.362036	1250.70952	0.91603	0.00057377	-0.84789	-0.00053109	0.068141	4.2681E-05	626.3614117570846	35.259	1.4998	32.41	32.139	33.639	-2.849					82	29	4	0	0	0	0.21819	2	1108	1108;1119		77.533	26.341	1	384260			20176	4032	16444	16468	22520;22521	22520					0.0941926858304214
IPSAFLAIIL	10	Unmodified	_IPSAFLAIIL_					0	0	0		tr|A0A7D6VY39|A0A7D6VY39_9CLOTSulfatepermeaseOS=ClostridiumintestinaleOX=36845GN=sulPPE=3SV=1	tr|A0A7D6VY39|A0A7D6VY39_9CLOTSulfatepermeaseOS=ClostridiumintestinaleOX=36845GN=sulPPE=3SV=1	tr|A0A7D6VY39|A0A7D6VY39_9CLOTSulfatepermeaseOS=ClostridiumintestinaleOX=36845GN=sulPPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.3330688476562	2	529.336436	1056.65832	-1.0627	-0.00056254	-3.1077	-0.001645	-4.1704	-0.0022076	529.3346373685346	123.64	1.5102	122.27	121.95	123.46	-1.3666					51	29	4	0	0	0	0.62668	1	11720	11720		38.806	1.647	1	128680			20177	35315	16445	16469	22522	22522					0.13225551556274695
IPSAVPTIATP	11	Unmodified	_IPSAVPTIATP_					0	0	0			REV__nc|ENSG00000197321|O95425-4|SVIL	REV__nc|ENSG00000197321|O95425-4|SVIL	MULTI-MSMS	OvCa9_classI_Rep2	2	533.8109130859375	2	533.810782	1065.60701	-1.2932	-0.0006903	-2.9041	-0.0015502	-4.1972	-0.0022405	533.8095076389328	94.914	1.2795	93.814	93.165	94.444	-1.0995					56	25	5	0	0	0	0.22384	1	8532	8532		76.774	2.5191	1	615630	+		20178	22911	16446	16470	22523	22523					0.07683182791583931
IPSIGWGAVI	10	Unmodified	_IPSIGWGAVI_					0	0	0		ENST00000373573.7_1_X:71792621-71792867:-|nuORF	ENST00000373573.7_1_X:71792621-71792867:-|nuORF	ENST00000373573.7_1_X:71792621-71792867:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.7915954589844	2	506.794935	1011.57532	-0.74214	-0.00037611	-4.0735	-0.0020645	-4.8157	-0.0024406	506.792827107324	79.619	1.4485	76.868	76.562	78.011	-2.7514					62	29	3	0	0	0	0.56767	1	6479	6479		45.952	1.8352	1	475490			20179	11010	16447	16471	22524	22524					0.06999234828265344
IPSIRNGIL	9	Unmodified	_IPSIRNGIL_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	OvCa9_classI_Rep3	3	491.8057861328125	2	491.805834	981.597115	-0.7249	-0.00035651	0.19597	9.6379E-05	-0.52893	-0.00026013	491.8058519690199	97.875	1.9352	96.116	95.414	97.349	-1.7595					68	37	3	0	0	0	0.12515	3	6517	6512;6517;6523		90.37	16.115	1	776120			20180	3653	16448	16472	22525;22526;22527	22526					0.10558039576847023
IPSIRNGIL	9	Unmodified	_IPSIRNGIL_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	OvCa9_classI_Rep4_	4	491.8071594238281	2	491.805834	981.597115	0.32282	0.00015876	-0.48413	-0.0002381	-0.16132	-7.9337E-05	491.8055340890395	98.422	1.6914	96.043	95.773	97.465	-2.3786					60	32	3	0	0	0	0.083631	3	8748	8748;8759;8771		101.6	16.685	1	752470			20181	3653	16448	16472	22528;22529;22530	22528					0.10558039576847023
IPSIRNGIL	9	Unmodified	_IPSIRNGIL_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-MATCH	OvCa9_classI_Rep2	2		2	491.805834	981.597115	0.78293	0.00038505	-1.2592	-0.0006193	-0.47631	-0.00023425	491.805181064832	96.953	0.8345	95.994	95.728	96.562	-0.95857	-0.056839	-0.00069186	NaN	101.6	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	621490			20182	3653	16448	16472							0.10558039576847023
IPSLIGKHV	9	Unmodified	_IPSLIGKHV_					0	0	0			REV__SPAG16|p.P488Sfs*57|1|0.03|ENSG00000144451|chr2:214014010-214014011|-/CAGTGAAGAACATGAAGTGCATAAAGGAA|frameshift_variant	REV__SPAG16|p.P488Sfs*57|1|0.03|ENSG00000144451|chr2:214014010-214014011|-/CAGTGAAGAACATGAAGTGCATAAAGGAA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.3027648925781	2	482.302927	962.591301	0.070308	3.391E-05	-0.042358	-2.0429E-05	0.027951	1.3481E-05	482.3027829352971	122.34	1.4499	120.97	120.6	122.05	-1.3666					59	28	3	0	0	0	0.35444	1	11563	11563		56.721	1.2168	1	153370	+		20183	29446	16449	16473	22531	22531					0.1085094106518909
IPSRLVAALP	10	Unmodified	_IPSRLVAALP_					0	0	0			REV__tr|A0A553SFS6|A0A553SFS6_NIACIATP-dependenthelicase/nucleasesubunitAOS=NialliacirculansOX=1397GN=addAPE=3SV=1	REV__tr|A0A553SFS6|A0A553SFS6_NIACIATP-dependenthelicase/nucleasesubunitAOS=NialliacirculansOX=1397GN=addAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.8124389648438	2	518.829309	1035.64407	1.8775	0.00097409	1.1398	0.00059136	3.0173	0.0015654	518.8301924655951	87.743	0.98227	86.312	86.04	87.022	-1.4311					42	19	3	0	0	0	0.026734	1	7666	7666		56.721	24.766	1	81542	+		20184	29616	16450	16474	22532	22532					0.12766899127973375
IPSSESKR	8	Unmodified	_IPSSESKR_					0	0	0			REV__nc|ENSG00000145241|Q03188-2|CENPC	REV__nc|ENSG00000145241|Q03188-2|CENPC	MULTI-MSMS	OvCa9_classI_Rep2	2	452.24798583984375	2	452.248349	902.482145	0.85495	0.00038665	-0.8881	-0.00040164	-0.033151	-1.4993E-05	452.2477760980005	52.531	1.6304	49.718	49.295	50.926	-2.8129					82	32	4	0	0	0	0.67745	1	3547	3547		47.916	0	1	535280	+		20185	19956	16451	16475	22533	22533					0.0270031037505305
IPSSRDEDQFL	11	Unmodified	_IPSSRDEDQFL_					0	0	0			REV__nc|ENSG00000115841|Q96LZ7-2|RMDN2	REV__nc|ENSG00000115841|Q96LZ7-2|RMDN2	MULTI-MSMS	OvCa99_classI_Rep5	1	436.21435546875	3	436.213975	1305.62009	0.10664	4.6519E-05	0.38152	0.00016642	0.48816	0.00021294	436.2140978711589	33.895	0.57806	33.895	33.583	34.161	0					32	11	4	0	0	0	0.67998	1	1597	1597		36.528	1.3497	1	324340	+		20186	28811	16452	16476	22534	22534					-0.020490308870193985
IPSSRKATII	10	Unmodified	_IPSSRKATII_					0	0	0			REV__nc|ENSG00000144406|Q8N2C7-7|UNC80	REV__nc|ENSG00000144406|Q8N2C7-7|UNC80	MULTI-MSMS	OvCa9_classI_Rep2	2	543.337646484375	2	543.337498	1084.66044	-2.311	-0.0012556	1.9329	0.0010502	-0.37808	-0.00020543	543.3384008994826	62.758	1.5185	60.014	59.695	61.214	-2.7444					77	28	4	0	0	0	0.12609	1	4728	4728		107.01	0.32444	1	367110	+		20187	19910	16453	16477	22535	22535					0.12149980294088891
IPSTVVNSI	9	Unmodified	_IPSTVVNSI_					0	0	0		ENST00000484936.5_1_2:99342931-99343325:-|nuORF;ENST00000409391.1_1_2:99342931-99343250:-|nuORF	ENST00000484936.5_1_2:99342931-99343325:-|nuORF	ENST00000484936.5_1_2:99342931-99343325:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	465.2701721191406	2	465.26875	928.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.278	1	57.848	57.348	58.348	-3.43								0	0	0	0.023973	1	4191	4191		99.375	6.1795	1				20188	11524	16454	16478	22536	22536					0.05582651694669494
IPSVINSANYV	11	Unmodified	_IPSVINSANYV_					0	0	0		nc|ENSG00000152904|O95749-2|GGPS1;ENSG00000152904|ENST00000282841|GGPS1	nc|ENSG00000152904|O95749-2|GGPS1	nc|ENSG00000152904|O95749-2|GGPS1	MULTI-MSMS	OvCa9_classI_Rep3	3	588.8159790039062	2	588.816596	1175.61864	-0.63539	-0.00037413	0.48748	0.00028704	-0.1479	-8.7089E-05	588.8167831837943	129.05	0.98856	127.95	127.56	128.55	-1.1011					50	19	4	0	0	0	0.68021	1	10214	10214		36.447	5.9431	1	135200			20189	5649	16455	16479	22537	22537					0.03785379814871703
IPSVKREALI	10	Unmodified	_IPSVKREALI_					0	0	0			REV__ENSG00000174306|ENST00000683867|ZHX3	REV__ENSG00000174306|ENST00000683867|ZHX3	MULTI-MSMS	OvCa9_classI_Rep2	2	563.3533935546875	2	563.353148	1124.69174	-0.51442	-0.0002898	-0.73977	-0.00041675	-1.2542	-0.00070655	563.3531834496299	116.13	2.03	116.01	115.64	117.67	-0.11777					126	40	5	0	0	0	0.52439	1	11109	11109		51.193	5.2204	1	2302900	+		20190	21824	16456	16480	22538	22538					0.13438553328182934
IPTGANKGFS	10	Unmodified	_IPTGANKGFS_					0	0	0		ENST00000606372.5_1_1:2263981-2323005:-|nuORF	ENST00000606372.5_1_1:2263981-2323005:-|nuORF	ENST00000606372.5_1_1:2263981-2323005:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.2673645019531	2	496.263999	990.513445	-0.058999	-2.9279E-05	3.7218	0.001847	3.6628	0.0018177	496.2654350559752	59.112	2.1318	55.72	55.15	57.282	-3.392					82	42	5	0	0	0	0.42962	1	3921	3921		64.207	4.089	1	977160			20191	14274	16457	16481	22539	22539					0.017808834091511017
IPTGKLSDII	10	Unmodified	_IPTGKLSDII_					0	0	0			REV__tr|A0A7D6ZWF9|A0A7D6ZWF9_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07780PE=4SV=1	REV__tr|A0A7D6ZWF9|A0A7D6ZWF9_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07780PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	528.8209838867188	2	528.818607	1055.62266	-0.38216	-0.00020209	4.4061	0.00233	4.0239	0.0021279	528.8208860535151	73.521	1.3868	71.034	70.382	71.769	-2.4873					75	27	4	0	0	0	0.53885	1	3608	3608		49.442	10.635	1	1135000	+		20192	32283	16458	16482	22540	22540					0.09707469308614236
IPTLIKRGEKP	11	Unmodified	_IPTLIKRGEKP_					0	0	0			REV__ENSG00000175110|ENST00000680020|MRPS22	REV__ENSG00000175110|ENST00000680020|MRPS22	MULTI-MSMS	OvCa9_classI_Rep2	2	626.3909301757812	2	626.392805	1250.77106	-5.6586	-0.0035445	-3.473	-0.0021755	-9.1316	-0.00572	626.8920656002647	163.54	1.1058	163.31	162.97	164.08	-0.22697					56	36	2	0	0	0	0.72466	1	16662	16662		19.997	1.7347	1	65883	+		20193	21871	16459	16483	22541	22541					0.15570200282309088
IPTRHTSVTL	10	Unmodified	_IPTRHTSVTL_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;VPS13B-CPQ|2|fusion;VPS13B-CPQ|1|fusion;nc|ENSG00000132549|Q7Z7G8-4|VPS13B;VPS13B|p.S1313Ifs*22|1|0.24|ENSG00000132549|chr8:99501752-99501755|AAGT/-|frameshift_variant;nc|ENSG00000132549|Q7Z7G8-3|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.7664184570312	2	562.824755	1123.63496	0.96454	0.00054287	-1.3658	-0.00076873	-0.40131	-0.00022587	562.8238603336955	45.474	0.90855	45.474	45.245	46.154	0					43	20	3	0	0	0	0.026659	1	3188	3188		54.776	15.523	1	2300800			20194	4146	16460	16484	22542	22542					0.07808505771663476
IPTRLKPDVKS	11	Unmodified	_IPTRLKPDVKS_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	OvCa99_classI_Rep5	1	627.3856201171875	2	627.382437	1252.75032	0.45246	0.00028386	-0.20501	-0.00012862	0.24745	0.00015525	627.381941059398	164.3	2.2705	164.3	163.48	165.75	0					225	84	3	0	0	0	0.68684	1	19173	19173		34.173	1.3601	1	178050	+		20195	20219	16461	16485	22543	22543					0.1340560990265658
IPTRLKPDVKS	11	Unmodified	_IPTRLKPDVKS_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	OvCa9_classI_Rep2	2	626.3909301757812	2	627.382437	1252.75032	-5.6704	-0.0035575	4.4232	0.002775	-1.2473	-0.00078251	627.3849557767647	164	0.73241	163.78	163.46	164.19	-0.22697					38	24	2	0	0	0	0.02616	1	16684	16684		28.081	6.1216	1	21905	+		20196	20219	16461	16485	22544	22544					0.1340560990265658
IPTSARSML	9	Oxidation (M)	_IPTSARSM(Oxidation (M))L_		IPTSARSM(1)L		IPTSARSM(67)L	0	0	1		ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.2668151855469	2	496.265684	990.516816	-0.058999	-2.9279E-05	0.32557	0.00016157	0.26657	0.00013229	496.2654350559752	59.112	2.1318	55.72	55.15	57.282	-3.392					82	42	5	0	0	0	0.26076	1	3932	3932		67.494	8.7117	1	977160			20197	5076	16462	16486	22545	22545		163			0.021178101915097614
IPTSSRCVI	9	Unmodified	_IPTSSRCVI_					0	0	0			REV__ENSG00000047230|ENST00000359276|CTPS2	REV__ENSG00000047230|ENST00000359276|CTPS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.2702941894531	2	488.268227	974.521901	-0.20857	-0.00010184	0.4875	0.00023803	0.27893	0.00013619	488.2684903925525	76.711	1.8328	73.772	73.55	75.383	-2.9389					50	37	2	0	0	0	0.16562	2	6112	6101;6112		82.241	5.4664	1	552500	+		20198	16255	16463	16487	22546;22547	22547					0.03362114054118592
IPTSSRCVI	9	Unmodified	_IPTSSRCVI_					0	0	0			REV__ENSG00000047230|ENST00000359276|CTPS2	REV__ENSG00000047230|ENST00000359276|CTPS2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	488.268227	974.521901	-0.28541	-0.00013935	2.2693	0.001108	1.9839	0.00096869	488.2693450483022	75.815	2.078	73.961	72.546	74.624	-1.854	0.094184	0.001255	NaN	82.241	80	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181190	+		20199	16255	16463	16487							0.03362114054118592
IPVCEKGCQSP	11	Unmodified	_IPVCEKGCQSP_					0	0	0		nc|ENSG00000117322|P20023-4|CR2;ENSG00000117322|ENST00000367057|CR2	nc|ENSG00000117322|P20023-4|CR2	nc|ENSG00000117322|P20023-4|CR2	MULTI-SECPEP	OvCa9_classI_Rep3	3	581.3255004882812	2	580.775559	1159.53657	-2.0139	-0.0011696	-0.71456	-0.000415	-2.7285	-0.0015846	580.7750254540448	101.24	0.94525	99.63	99.395	100.34	-1.6053					22	17	2	0	0	0	0.025656	1	6884	6884		26.063	9.346	1	41507			20200	3248	16464	16488	22548	22548					-0.03682181860062883
IPVEHLLIE	9	Unmodified	_IPVEHLLIE_					0	0	0			REV__nc|ENSG00000001631|O00522-3|KRIT1	REV__nc|ENSG00000001631|O00522-3|KRIT1	MULTI-MSMS	OvCa99_classI_Rep5	1	531.8154907226562	2	531.813325	1061.6121	0.78495	0.00041744	0.84601	0.00044992	1.631	0.00086736	531.8139003524317	141.67	1.3473	141.67	141.44	142.78	0					58	26	4	0	0	0	0.22961	1	16569	16569		71.296	2.5089	1	329330	+		20201	16364	16465	16489	22549	22549					0.08375486654199449
IPVEKKSH	8	Unmodified	_IPVEKKSH_					0	0	0			REV__ENST00000492840.1_1_7:127544821-127568157:+|nuORF	REV__ENST00000492840.1_1_7:127544821-127568157:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.25408935546875	2	469.276909	936.539266	-0.84298	-0.00039559	0.4255	0.00019968	-0.41748	-0.00019592	469.2768131858105	34.311	1.0367	34.311	34.161	35.198	0					24	21	2	0	0	0	0.028476	1	1676	1676		19.36	3.7182	1	70741	+		20202	26698	16466	16490	22550	22550					0.06845777651415119
IPVLDRIRY	9	Unmodified	_IPVLDRIRY_					0	0	0		nc|ENSG00000165283|Q9UJZ1-2|STOML2;ENSG00000165283|ENST00000356493|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	nc|ENSG00000165283|Q9UJZ1-2|STOML2	MULTI-MSMS	OvCa99_classI_Rep5	1	573.3505249023438	2	572.84549	1143.67643	0.87474	0.00050109	3.3225	0.0019033	4.1972	0.0024044	572.8478550555296	156.41	1.1082	156.41	156.04	157.15	0					55	21	3	0	0	0	0.51865	1	18311	18311		40.778	0.20554	1	191910			20203	6547	16467	16491	22551	22551					0.11033686530981868
IPVLQEHV	8	Unmodified	_IPVLQEHV_					0	0	0			REV__tr|A0A7D6ZW98|A0A7D6ZW98_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16960PE=4SV=1	REV__tr|A0A7D6ZW98|A0A7D6ZW98_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16960PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.25396728515625	2	467.77146	933.528367	-0.85362	-0.0003993	4.2063	0.0019676	3.3527	0.0015683	467.77332035148504	27.218	0.79894	27.218	26.942	27.741	0					20	15	2	0	0	0	0.028476	1	799	799		20.482	7.5226	1	15476	+		20204	32278	16468	16492	22552	22552					0.05894375277136987
IPVLQPKKK	9	Unmodified	_IPVLQPKKK_					0	0	0		tr|A0A553SGL6|A0A553SGL6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_11075PE=4SV=1	tr|A0A553SGL6|A0A553SGL6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_11075PE=4SV=1	tr|A0A553SGL6|A0A553SGL6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_11075PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	525.854736328125	2	525.855327	1049.6961	0.33138	0.00017426	-0.66182	-0.00034802	-0.33044	-0.00017376	525.85482904703	128.29	1.7807	127.2	126.73	128.51	-1.0933					95	35	4	0	0	0	0.65476	1	10124	10124		25.45	0.93098	1	248690			20205	33173	16469	16493	22553	22553					0.17324062541752028
IPVNGPRL	8	Unmodified	_IPVNGPRL_					0	0	0		ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	433.2672424316406	2	433.266345	864.518136	0.83699	0.00036264	-1.7005	-0.00073676	-0.86349	-0.00037412	433.26542991671744	75.316	1.5807	72.085	71.678	73.258	-3.2308					73	32	4	0	0	0	0.52992	1	5920	5920		74.517	14.223	1	735860			20206	6211	16470	16494	22554	22554					0.08045812342561476
IPVNGPRL	8	Unmodified	_IPVNGPRL_					0	0	0		ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	433.266345	864.518136	0.10296	4.4611E-05	0.080922	3.5061E-05	0.18389	7.9672E-05	433.26625457256114	74.33	0.9816	71.92	71.697	72.679	-2.4106	-0.082573	0.00078461	NaN	74.517	35	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62486			20207	6211	16470	16494							0.08045812342561476
IPVNRGIVVN	10	Unmodified	_IPVNRGIVVN_					0	0	0		tr|A0A553STK4|A0A553STK4_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05045PE=3SV=1	tr|A0A553STK4|A0A553STK4_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05045PE=3SV=1	tr|A0A553STK4|A0A553STK4_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05045PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	540.83154296875	2	540.82984	1079.64513	-0.46856	-0.00025341	3.3565	0.0018153	2.8879	0.0015619	540.8317360682152	123.45	3.5017	123.21	122.89	126.4	-0.23193					177	70	5	0	0	0	0.6104	1	12081	12081		40.778	6.6056	1	7794400			20208	34499	16471	16495	22555	22555					0.10849113496919927
IPVNSVIENMT	11	Unmodified	_IPVNSVIENMT_					0	0	0		tr|A0A7D6VPT2|A0A7D6VPT2_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12890PE=3SV=1	tr|A0A7D6VPT2|A0A7D6VPT2_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12890PE=3SV=1	tr|A0A7D6VPT2|A0A7D6VPT2_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12890PE=3SV=1	MSMS	OvCa99_classI_Rep5	1	608.8181762695312	2	608.815738	1215.61692	NaN	NaN	NaN	NaN	NaN	NaN	NaN	163.95	1	163.95	163.45	164.45	0								0	0	0	0.19474	1	19142	19142		14.137	0	1				20209	34795	16472	16496	22556	22556					0.017740027346235365
IPVNYNKTI	9	Unmodified	_IPVNYNKTI_					0	0	0			REV__tr|A0A7D6VSG3|A0A7D6VSG3_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_16275PE=4SV=1	REV__tr|A0A7D6VSG3|A0A7D6VSG3_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_16275PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	531.3027954101562	2	531.303124	1060.5917	1.5211	0.00080816	-1.8413	-0.00097827	-0.32019	-0.00017012	531.3020896930936	122.17	1.3111	121.14	120.8	122.11	-1.0286					58	24	4	0	0	0	0.38529	1	9389	9389		53.351	7.3792	1	266520	+		20210	31500	16473	16497	22557	22557					0.06382315994369492
IPVSRGFPI	9	Unmodified	_IPVSRGFPI_					0	0	0		nc|ENSG00000204257|P28067|HLA-DMA;ENSG00000204257|ENST00000374843|HLA-DMA	nc|ENSG00000204257|P28067|HLA-DMA	nc|ENSG00000204257|P28067|HLA-DMA	MULTI-MSMS	OvCa9_classI_Rep2	2	493.29498291015625	2	493.295102	984.575651	3.1299	0.001544	4.1616	0.0020529	7.2915	0.0035969	493.29693905803276	26.988	0.77444	24.278	24.097	24.871	-2.7097					47	21	3	0	0	0	0.70177	1	410	410		17.365	1.7232	1	72756			20211	8962	16474	16498	22558	22558					0.08274654548142735
IPVSTHRIL	9	Unmodified	_IPVSTHRIL_					0	0	0		ENSG00000166455|ENST00000299578|C16orf46	ENSG00000166455|ENST00000299578|C16orf46	ENSG00000166455|ENST00000299578|C16orf46	MULTI-MSMS	OvCa9_classI_Rep2	2	518.3175659179688	2	518.319109	1034.62366	0.28775	0.00014915	-0.90514	-0.00046915	-0.61739	-0.00032	518.3186116061291	93.146	2.9926	91.978	91.235	94.227	-1.168					136	58	5	0	0	0	0.22961	4	8307	8295;8301;8307;8319		71.296	17.944	1	2212200			20212	6684	16475	16499	22559;22560;22561;22562	22561					0.10773728468188892
IPVSTHRIL	9	Unmodified	_IPVSTHRIL_					0	0	0		ENSG00000166455|ENST00000299578|C16orf46	ENSG00000166455|ENST00000299578|C16orf46	ENSG00000166455|ENST00000299578|C16orf46	MULTI-MSMS	OvCa9_classI_Rep3	3	518.3192138671875	2	518.319109	1034.62366	-0.46669	-0.0002419	-0.32842	-0.00017023	-0.79511	-0.00041212	518.3189098840426	93.967	3.1679	92.005	91.526	94.694	-1.9617					143	62	3	0	0	0	0.18193	3	6040	6040;6052;6058		79.451	18.479	1	3024100			20213	6684	16475	16499	22563;22564;22565	22563					0.10773728468188892
IPVSTHRIL	9	Unmodified	_IPVSTHRIL_					0	0	0		ENSG00000166455|ENST00000299578|C16orf46	ENSG00000166455|ENST00000299578|C16orf46	ENSG00000166455|ENST00000299578|C16orf46	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.314697265625	2	518.319109	1034.62366	-0.603	-0.00031255	-0.40255	-0.00020865	-1.0055	-0.00052119	518.3188494212272	94.504	2.9489	92.036	91.524	94.473	-2.4685					143	58	5	0	0	0	0.35444	1	8270	8270		56.721	5.3856	1	2708000			20214	6684	16475	16499	22566	22566					0.10773728468188892
IPWDTLCK	8	Unmodified	_IPWDTLCK_					0	0	0		ENSG00000134343|ENST00000256737|ANO3;nc|ENSG00000134343|Q9BYT9-2|ANO3	ENSG00000134343|ENST00000256737|ANO3	ENSG00000134343|ENST00000256737|ANO3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	489.2196044921875	2	488.252046	974.489538	-0.2511	-0.0001226	4.2002	0.0020507	3.9491	0.0019281	488.2538366534076	46.644	1.3748	43.572	43.241	44.616	-3.0724					76	26	4	0	0	0	0.028476	1	2524	2524		25.45	0	1	315430			20215	4288	16476	16500	22567	22567					0.0012732665111343522
IPWLRGAKK	9	Unmodified	_IPWLRGAKK_					0	0	0		ENSG00000184307|ENST00000638807|ZDHHC23;nc|ENSG00000184307|Q8IYP9|ZDHHC23	ENSG00000184307|ENST00000638807|ZDHHC23	ENSG00000184307|ENST00000638807|ZDHHC23	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.90771484375	2	534.837468	1067.66038	-1.0235	-0.00054739	-3.0687	-0.0016413	-4.0922	-0.0021887	534.8357601342157	21.938	0.75875	20.599	20.371	21.13	-1.3386					33	14	3	0	0	0	0.027462	1	274	274		33.516	5.4341	1	54594			20216	8144	16477	16501	22568	22568					0.12926025084743742
IPWQHVANVK	10	Unmodified	_IPWQHVANVK_					0	0	0		tr|A0A7D6ZFJ8|A0A7D6ZFJ8_9CLOTcysteinedesulfuraseOS=ClostridiumintestinaleOX=36845GN=sufSPE=3SV=1	tr|A0A7D6ZFJ8|A0A7D6ZFJ8_9CLOTcysteinedesulfuraseOS=ClostridiumintestinaleOX=36845GN=sufSPE=3SV=1	tr|A0A7D6ZFJ8|A0A7D6ZFJ8_9CLOTcysteinedesulfuraseOS=ClostridiumintestinaleOX=36845GN=sufSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	595.4055786132812	2	596.33529	1190.65603	-3.8517	-0.0022969	0.46677	0.00027835	-3.385	-0.0020186	596.3358459232684	150.99	3.1176	150.03	148.39	151.51	-0.95647					83	61	2	0	0	0	0.026956	1	12649	12649		34.173	0	1	21850			20217	35512	16478	16502	22569	22569					0.0683251587115592
IPYGERITL	9	Unmodified	_IPYGERITL_					0	0	0		nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.305419921875	2	531.303124	1060.5917	-1.2211	-0.00064879	0.11901	6.3228E-05	-1.1021	-0.00058556	531.3031508378326	96.099	1.7634	93.674	93.254	95.018	-2.4256					71	34	4	0	0	0	0.14855	2	8489	8465;8489		85.161	11.907	1	460960			20218	3372	16479	16503	22570;22571	22571					0.06382315994369492
IPYGERITL	9	Unmodified	_IPYGERITL_					0	0	0		nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	531.303124	1060.5917	-1.2379	-0.00065772	0.35769	0.00019004	-0.88024	-0.00046768	531.3031951562883	94.633	1.8769	93.534	93.214	95.091	-1.0995	-0.071236	0.00025324	NaN	85.161	57	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	401670			20219	3372	16479	16503							0.06382315994369492
IPYGERITL	9	Unmodified	_IPYGERITL_					0	0	0		nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	531.303124	1060.5917	-0.50928	-0.00027058	-0.2748	-0.000146	-0.78409	-0.00041659	531.3028434213768	95.503	1.8127	93.607	93.311	95.124	-1.8956	0.0025055	-0.00041885	NaN	85.161	64	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	498330			20220	3372	16479	16503							0.06382315994369492
IPYHSEVPVSL	11	Unmodified	_IPYHSEVPVSL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OvCa9_classI_Rep2	2	620.8321533203125	2	620.832246	1239.64994	-1.2545	-0.00077886	0.78325	0.00048627	-0.4713	-0.0002926	620.8326870345176	98.983	3.0275	98.09	97.757	100.78	-0.89305					162	60	6	0	0	0	0.060168	8	9010	9001;9004;9010;9016;9022;9041;9061;9073		101.6	29.723	1	2033000			20221	3083	16480	16504	22572;22573;22574;22575;22576;22577;22578;22579	22574					0.039699528490018565
IPYHSEVPVSL	11	Unmodified	_IPYHSEVPVSL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OvCa9_classI_Rep3	3	620.8351440429688	2	620.832246	1239.64994	0.44047	0.00027346	-1.3787	-0.00085595	-0.93825	-0.0005825	620.8312978527068	99.854	3.421	98.169	97.777	101.2	-1.685					160	66	5	0	0	0	0.05374	8	6768	6731;6737;6743;6756;6768;6774;6781;6788		122.18	67.454	1	2228000			20222	3083	16480	16504	22580;22581;22582;22583;22584;22585;22586;22587	22584					0.039699528490018565
IPYHSEVPVSL	11	Unmodified	_IPYHSEVPVSL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	620.8342895507812	2	620.832246	1239.64994	-1.1735	-0.00072857	0.82244	0.0005106	-0.3511	-0.00021797	620.8327213809367	100.32	3.4534	97.999	97.618	101.07	-2.3247					166	67	6	0	0	0	0.059072	7	8960	8960;8972;8985;8997;9009;9036;9054		113.41	39.157	1	2496100			20223	3083	16480	16504	22588;22589;22590;22591;22592;22593;22594	22588					0.039699528490018565
IPYHSEVPVSL	11	Unmodified	_IPYHSEVPVSL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	620.832246	1239.64994	1.5059	0.00093492	6.0903	0.003781	7.5962	0.004716	621.3369315398174	98.122	0.33563	98.122	97.954	98.29	0	0.027481	0.0067743	NaN	122.18	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178590			20224	3083	16480	16504							0.039699528490018565
IPYHWWYRWWC	11	Unmodified	_IPYHWWYRWWC_					0	0	0			REV__ENST00000410111.7_1_2:86406577-86422494:-|nuORF	REV__ENST00000410111.7_1_2:86406577-86422494:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	566.2973022460938	3	565.927446	1694.76051	-0.88133	-0.00049877	4.3966	0.0024882	3.5153	0.0019894	565.9295510441993	100.38	0.93919	98.771	98.612	99.551	-1.6053					38	18	4	0	0	0	0.026525	1	6816	6816		3.6191	3.2477	1	104760	+		20225	25488	16481	16505	22595	22595					-0.05908105643766248
IPYHWWYRWWC	11	Unmodified	_IPYHWWYRWWC_					0	0	0			REV__ENST00000410111.7_1_2:86406577-86422494:-|nuORF	REV__ENST00000410111.7_1_2:86406577-86422494:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	565.927446	1694.76051	2.0468	0.0011583	4.528	0.0025625	6.5748	0.0037209	566.264234073521	98.593	0.94837	98.593	98.206	99.154	0	-0.081117	-0.00062914	NaN	3.6191	62	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1377100	+		20226	25488	16481	16505							-0.05908105643766248
IPYHWWYRWWC	11	Unmodified	_IPYHWWYRWWC_					0	0	0			REV__ENST00000410111.7_1_2:86406577-86422494:-|nuORF	REV__ENST00000410111.7_1_2:86406577-86422494:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	565.927446	1694.76051	-0.77658	-0.00043949	5.5406	0.0031356	4.7641	0.0026961	566.2649809211979	99.487	0.94261	98.656	98.418	99.36	-0.83051	-0.017921	0.00109	NaN	3.6191	48	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87124	+		20227	25488	16481	16505							-0.05908105643766248
IPYIFVLKDA	10	Unmodified	_IPYIFVLKDA_					0	0	0			REV__tr|A0A553ST50|A0A553ST50_NIACIFlavodoxinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_04305PE=3SV=1	REV__tr|A0A553ST50|A0A553ST50_NIACIFlavodoxinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_04305PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.8461303710938	2	589.844625	1177.6747	0.89552	0.00052822	2.2635	0.0013351	3.159	0.0018633	589.8458241780872	36.274	1.5457	33.425	33.139	34.685	-2.849					73	30	4	0	0	0	0.53885	1	1271	1271		49.442	11.63	1	187130	+		20228	30918	16482	16506	22596	22596					0.09296632722384857
IPYKQLTV	8	Unmodified	_IPYKQLTV_					0	0	0		ENSG00000112992|ENST00000344920|NNT;NNT-NIM1|1|fusion;NNT|p.T172Lfs*21|1|0.71|ENSG00000112992|chr5:43615976-43615976|A/-|frameshift_variant	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-MSMS	OvCa9_classI_Rep2	2	481.288818359375	2	481.289485	960.564418	-0.34175	-0.00016448	0.15061	7.2488E-05	-0.19114	-9.1992E-05	481.28942288726415	93.511	1.2404	92.343	92.003	93.244	-1.168					66	23	4	0	0	0	0.35163	3	8349	8349;8356;8364		97.473	5.5309	1	689600			20229	2942	16483	16507	22597;22598;22599	22597					0.08255832453983203
IPYKQLTV	8	Unmodified	_IPYKQLTV_					0	0	0		ENSG00000112992|ENST00000344920|NNT;NNT-NIM1|1|fusion;NNT|p.T172Lfs*21|1|0.71|ENSG00000112992|chr5:43615976-43615976|A/-|frameshift_variant	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-MSMS	OvCa9_classI_Rep3	3	481.28997802734375	2	481.289485	960.564418	-0.59149	-0.00028468	0.32422	0.00015604	-0.26727	-0.00012863	481.2894977117592	94.279	2.0029	92.384	92.102	94.105	-1.8956					90	39	4	0	0	0	0.45246	1	6096	6096		82.305	5.5309	1	1009700			20230	2942	16483	16507	22600	22600					0.08255832453983203
IPYPPGIPLL	10	Unmodified	_IPYPPGIPLL_					0	0	0		tr|A0A553SHK3|A0A553SHK3_NIACIAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_13020PE=3SV=1	tr|A0A553SHK3|A0A553SHK3_NIACIAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_13020PE=3SV=1	tr|A0A553SHK3|A0A553SHK3_NIACIAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_13020PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	540.330322265625	2	540.328611	1078.64267	-0.85737	-0.00046326	3.4696	0.0018747	2.6122	0.0014115	540.3303552188828	135.53	0.83455	135.3	134.93	135.76	-0.22696					31	16	2	0	0	0	0.73286	1	13451	13451		26.796	0.10319	1	171450			20231	33280	16484	16508	22601	22601					0.1064926503922834
IPYYAYAR	8	Unmodified	_IPYYAYAR_					0	0	0		tr|A0A553SF41|A0A553SF41_NIACIRibose-phosphatepyrophosphokinaseOS=NialliacirculansOX=1397GN=prsPE=3SV=1	tr|A0A553SF41|A0A553SF41_NIACIRibose-phosphatepyrophosphokinaseOS=NialliacirculansOX=1397GN=prsPE=3SV=1	tr|A0A553SF41|A0A553SF41_NIACIRibose-phosphatepyrophosphokinaseOS=NialliacirculansOX=1397GN=prsPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.7873229980469	2	508.763635	1015.51272	-1.4222	-0.00072356	-1.8187	-0.0009253	-3.2409	-0.0016489	508.76220552247497	50.971	1.189	48.177	47.926	49.115	-2.794					42	23	3	0	0	0	0.028476	1	3348	3348		21.702	0	1	50809			20232	32988	16485	16509	22602	22602					0.0055808876007859
IPYYLSHC	8	Unmodified	_IPYYLSHC_					0	0	0			REV__ENSG00000196071|ENST00000358120|OR2L13	REV__ENSG00000196071|ENST00000358120|OR2L13	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.3159484863281	2	498.236396	994.458238	-0.013657	-6.8045E-06	-3.3043	-0.0016463	-3.318	-0.0016531	498.23461972792205	109.66	1.286	109.49	109.07	110.35	-0.17237					45	25	2	0	0	0	0.028476	1	10359	10359		57.453	8.0111	1	48013	+		20233	22779	16486	16510	22603	22603					-0.03921246382992649
IPYYRRKI	8	Unmodified	_IPYYRRKI_					0	0	0		tr|A0A7D6VTI6|A0A7D6VTI6_9CLOTCelldivisionATP-bindingproteinFtsEOS=ClostridiumintestinaleOX=36845GN=ftsEPE=3SV=1	tr|A0A7D6VTI6|A0A7D6VTI6_9CLOTCelldivisionATP-bindingproteinFtsEOS=ClostridiumintestinaleOX=36845GN=ftsEPE=3SV=1	tr|A0A7D6VTI6|A0A7D6VTI6_9CLOTCelldivisionATP-bindingproteinFtsEOS=ClostridiumintestinaleOX=36845GN=ftsEPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.7705078125	2	554.834926	1107.6553	0.31395	0.00017419	-0.73718	-0.00040901	-0.42323	-0.00023482	554.8347392590276	105.44	0.52443	105.44	105.27	105.79	0					16	11	2	0	0	0	0.028476	1	11822	11822		19.36	0	1	214910			20234	35122	16487	16511	22604	22604					0.10577721222125547
IQACQIKT	8	Unmodified	_IQACQIKT_					0	0	0		nc|ENSG00000136141|Q9Y2L9-2|LRCH1;nc|ENSG00000136141|Q9Y2L9|LRCH1;ENSG00000136141|ENST00000389797|LRCH1;LRCH1|p.E457Vfs*53|1|0.03|ENSG00000136141|chr13:46701176-46701177|-/T|frameshift_variant;ENST00000443945.6_1_13:47127426-47279607:+|nuORF	nc|ENSG00000136141|Q9Y2L9-2|LRCH1	nc|ENSG00000136141|Q9Y2L9-2|LRCH1	MULTI-SECPEP	OvCa99_classI_Rep5	1	452.2571716308594	2	452.74967	903.484787	-0.10039	-4.5452E-05	-3.568	-0.0016154	-3.6684	-0.0016609	452.747942810341	60	0.79299	60	59.766	60.559	0					27	19	2	0	0	0	0.028476	1	5246	5246		24.203	1.1603	1	793670			20235	4460	16488	16512	22605	22605					0.02918442508348562
IQAEENGRP	9	Unmodified	_IQAEENGRP_					0	0	0			REV__ENST00000590367.5_1_17:42931463-42950195:-|nuORF	REV__ENST00000590367.5_1_17:42931463-42950195:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3261413574219	2	507.254163	1012.49377	0.07563	3.8364E-05	-0.92519	-0.00046931	-0.84956	-0.00043094	507.25393644876704	31.64	0.44687	31.64	31.46	31.906	0					10	8	2	0	0	0	0.027462	1	1349	1349		27.882	0	1	20478	+		20236	17910	16489	16513	22606	22606					-0.011974926016137033
IQAEIVSLP	9	Unmodified	_IQAEIVSLP_					0	0	0			REV__tr|A0A553SMM9|A0A553SMM9_NIACIGlycosyltransferasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_22905PE=4SV=1	REV__tr|A0A553SMM9|A0A553SMM9_NIACIGlycosyltransferasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_22905PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.2593688964844	2	485.2844	968.554247	-0.5971	-0.00028976	1.8948	0.00091952	1.2977	0.00062976	485.28504180947414	44.516	0.57967	44.516	44.26	44.84	0					19	12	2	0	0	0	0.02741	1	3022	3022		51.335	7.2187	1	124890	+		20237	30350	16490	16514	22607	22607					0.06871224728752168
IQAFKDQLL	9	Unmodified	_IQAFKDQLL_					0	0	0			REV__tr|A0A7D6VRG6|A0A7D6VRG6_9CLOTHEATrepeatdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12090PE=4SV=1	REV__tr|A0A7D6VRG6|A0A7D6VRG6_9CLOTHEATrepeatdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12090PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	538.3106689453125	2	538.310949	1074.60735	-0.82248	-0.00044275	-0.68243	-0.00036736	-1.5049	-0.00081011	538.310865302894	95.544	1.4887	94.516	94.219	95.707	-1.0281					69	29	5	0	0	0	0.049969	1	8599	8599		118.74	5.3315	1	480180	+		20238	31416	16491	16515	22608	22608					0.07302602511435907
IQAGYKLLIN	10	Unmodified	_IQAGYKLLIN_					0	0	0			REV__nc|ENSG00000115239|Q9Y575-2|ASB3	REV__nc|ENSG00000115239|Q9Y575-2|ASB3	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.261962890625	2	566.839874	1131.66519	1.4673	0.0008317	-1.5257	-0.00086484	-0.05846	-3.3138E-05	566.8389058833833	109.42	0.35363	109.42	109.19	109.55	0					18	7	3	0	0	0	0.026891	1	12413	12413		39.253	0	1	223930	+		20239	18227	16492	16516	22609	22609					0.10462864436863129
IQAMVDGQPSL	11	Unmodified	_IQAMVDGQPSL_					0	0	0		ENSG00000117419|ENST00000372257|ERI3;nc|ENSG00000117419|O43414-2|ERI3	ENSG00000117419|ENST00000372257|ERI3	ENSG00000117419|ENST00000372257|ERI3	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.7926025390625	2	579.794806	1157.57506	-1.7841	-0.0010344	-1.1755	-0.00068152	-2.9596	-0.0017159	579.7939864226607	146.06	1.0909	144.62	144.29	145.38	-1.4357					53	20	4	0	0	0	0.68021	1	14351	14351		36.447	3.6962	1	241170			20240	3254	16493	16517	22610	22610					0.0025744704612407077
IQAPAVVFR	9	Unmodified	_IQAPAVVFR_					0	0	0		nc|ENSG00000077942|P23142-4|FBLN1	nc|ENSG00000077942|P23142-4|FBLN1	nc|ENSG00000077942|P23142-4|FBLN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.7979431152344	2	500.800552	999.58655	-2.9685	-0.0014866	-1.2934	-0.00064775	-4.262	-0.0021344	500.7998390995193	149.78	1.7039	148.35	147.52	149.23	-1.4344					90	34	4	0	0	0	0.6653	1	14818	14818		24.203	1.1603	1	346200			20241	14894	16494	16518	22611	22611					0.08674056922427553
IQAQLALK	8	Unmodified	_IQAQLALK_					0	0	0		nc|ENSG00000117360|O43395-3|PRPF3;ENST00000467329.5_1_1:150300781-150316915:+|nuORF;ENSG00000117360|ENST00000324862|PRPF3	nc|ENSG00000117360|O43395-3|PRPF3	nc|ENSG00000117360|O43395-3|PRPF3	MULTI-SECPEP	OvCa99_classI_Rep5	1	442.7179260253906	2	442.781828	883.549102	0.85591	0.00037898	0.048214	2.1348E-05	0.90413	0.00040033	442.78156119855504	52.443	0.7434	52.443	51.953	52.697	0					22	16	2	0	0	0	0.028476	1	4118	4118		23.042	0	1	237710			20242	3250	16495	16519	22612	22612					0.10266965656796856
IQAQSRAIP	9	Unmodified	_IQAQSRAIP_					0	0	0		ENSG00000094661|ENST00000641398|OR1I1	ENSG00000094661|ENST00000641398|OR1I1	ENSG00000094661|ENST00000641398|OR1I1	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.2843322753906	2	492.285266	982.555979	-2.2796	-0.0011222	2.3763	0.0011698	0.096746	4.7626E-05	492.2864131588537	149.81	0.85445	148.38	148.07	148.93	-1.4344					41	16	4	0	0	0	0.6653	1	14800	14800		24.203	1.1603	1	96209			20243	1911	16496	16520	22613	22613					0.06400278537375925
IQARLPLLL	9	Unmodified	_IQARLPLLL_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	OvCa99_classI_Rep5	1	518.8486938476562	2	518.847502	1035.68045	1.3262	0.00068808	0.44872	0.00023282	1.7749	0.0009209	518.8476026241943	126.63	0.77605	126.63	126.28	127.05	0					50	16	4	0	0	0	0.21395	1	14632	14632		73.975	10.668	1	875940			20244	6494	16497	16521	22614	22614					0.1640377602470835
IQAVLLAGHL	10	Unmodified	_IQAVLLAGHL_					0	0	0			REV__ENST00000591565.1_1_19:14515197-14515620:+|nuORF	REV__ENST00000591565.1_1_19:14515197-14515620:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	517.8192749023438	2	517.821484	1033.62842	-3.1809	-0.0016471	-0.94149	-0.00048752	-4.1224	-0.0021347	517.8208401920543	146.89	1.3501	145.93	145.54	146.89	-0.95947					60	26	3	0	0	0	0.7759	1	12341	12341		21.96	0.25755	1	132640	+		20245	27932	16498	16522	22615	22615					0.1129461261095912
IQCLELLVL	9	Carbamidomethyl (C)	_IQC(Carbamidomethyl (C))LELLVL_	IQC(1)LELLVL		IQC(55)LELLVL		0	1	0		ENST00000458516.5_1_6:30294541-30296770:+|nuORF	ENST00000458516.5_1_6:30294541-30296770:+|nuORF	ENST00000458516.5_1_6:30294541-30296770:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	550.8240966796875	2	550.822835	1099.63112	0.8012	0.00044132	2.0962	0.0011546	2.8974	0.001596	550.8233959621024	154.13	0.69444	154.13	153.93	154.62	0					27	13	3	0	0	0	0.37135	1	18085	18085		54.776	7.119	1	71813			20246	12138	16499	16523	22616	22616	140				0.08528699953581054
IQDDTLNVP	9	Unmodified	_IQDDTLNVP_					0	0	0			REV__ENST00000354485.5_1_9:676972-730286:+|nuORF	REV__ENST00000354485.5_1_9:676972-730286:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.2785949707031	2	507.758746	1013.50294	2.1464	0.0010899	0.44847	0.00022771	2.5949	0.0013176	507.7590298900984	76.861	0.74204	76.861	76.639	77.381	0					28	17	2	0	0	0	0.027455	1	7735	7735		51.335	0	1	513030	+		20247	17835	16500	16524	22617	22617					-0.003271440359412736
IQDGVNTRDPI	11	Unmodified	_IQDGVNTRDPI_					0	0	0			REV__TIPARP|p.T275Lfs*27|1|0.03|ENSG00000163659|chr3:156678520-156678520|A/-|frameshift_variant	REV__TIPARP|p.T275Lfs*27|1|0.03|ENSG00000163659|chr3:156678520-156678520|A/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	409.5863342285156	3	409.882448	1226.62551	0.64064	0.00026259	2.772	0.0011362	3.4126	0.0013988	409.8835616010369	35.269	0.56172	35.269	35.004	35.566	0					19	11	2	0	0	0	0.025677	1	1770	1770		25.068	5.8051	1	252530	+		20248	20868	16501	16525	22618	22618					0.02126692695469501
IQDLEKAELQ	10	Unmodified	_IQDLEKAELQ_					0	0	0		SHFM1-PALMD|1|fusion;ENSG00000099260|ENST00000263174|PALMD	SHFM1-PALMD|1|fusion	SHFM1-PALMD|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	593.8193969726562	2	593.819335	1185.62412	-0.39168	-0.00023259	-0.009055	-5.377E-06	-0.40073	-0.00023796	593.8192809572217	93.201	0.84476	90.693	90.412	91.257	-2.5072					46	17	4	0	0	0	0.039859	1	8116	8116		132.76	3.3366	1	380760			20249	1964	16502	16526	22619	22619					0.03873058606723134
IQDNHDGTYTV	11	Unmodified	_IQDNHDGTYTV_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.H2029Qfs*32|1|0.9|ENSG00000196924|chrX:154353130-154353140|TGCTGGCCACG/-|frameshift_variant;ENST00000490936.5_1_X:153579531-153588003:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OvCa99_classI_Rep5	1	631.7869873046875	2	631.786024	1261.55749	0.25223	0.00015936	-0.14547	-9.1903E-05	0.10677	6.7453E-05	631.7858389590467	56.559	0.66429	56.559	56.34	57.004	0					37	15	3	0	0	0	0.044802	1	4700	4700		145.46	70.417	1	3659600			20250	8659	16503	16527	22620	22620					-0.06282176955187424
IQDQRMHK	8	Unmodified	_IQDQRMHK_					0	0	0			REV__ENSG00000013503|ENST00000228347|POLR3B	REV__ENSG00000013503|ENST00000228347|POLR3B	MULTI-MSMS	OvCa99_classI_Rep5	1	528.2747802734375	2	528.274375	1054.5342	0.91752	0.0004847	-1.3688	-0.00072311	-0.45129	-0.00023841	528.2735954401112	154.77	0.55853	154.77	154.42	154.98	0					17	10	2	0	0	0	0.61436	1	18138	18138		60.972	5.4677	1	84813	+		20251	16507	16504	16528	22621	22621					0.009111505171631507
IQDRSIIKI	9	Unmodified	_IQDRSIIKI_					0	0	0		nc|ENSG00000277363|Q9C0H9-2|SRCIN1;ENSG00000277363|ENST00000617146|SRCIN1	nc|ENSG00000277363|Q9C0H9-2|SRCIN1	nc|ENSG00000277363|Q9C0H9-2|SRCIN1	MULTI-MSMS	OvCa99_classI_Rep5	1	543.3384399414062	2	543.337498	1084.66044	2.0014	0.0010874	-0.080145	-4.3546E-05	1.9213	0.0010439	543.337302264516	77.408	1.3324	77.408	77.002	78.335	0					68	31	3	0	0	0	0.2422	1	7806	7806		69.628	2.134	1	3297700			20252	9583	16505	16529	22622	22622					0.12149980294088891
IQDRSIIKI	9	Unmodified	_IQDRSIIKI_					0	0	0		nc|ENSG00000277363|Q9C0H9-2|SRCIN1;ENSG00000277363|ENST00000617146|SRCIN1	nc|ENSG00000277363|Q9C0H9-2|SRCIN1	nc|ENSG00000277363|Q9C0H9-2|SRCIN1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	543.337498	1084.66044	0.33597	0.00018254	-1.5419	-0.00083777	-1.2059	-0.00065523	543.3368717347106	79.484	0.35736	77.144	76.952	77.309	-2.3399	-0.13229	-0.001525	NaN	69.628	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7911.4			20253	9583	16505	16529							0.12149980294088891
IQEEEDSLKSQ	11	Unmodified	_IQEEEDSLKSQ_					0	0	0		ENSG00000071537|ENST00000336735|SEL1L;nc|ENSG00000071537|Q9UBV2-2|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	436.764892578125	3	435.87714	1304.60959	0.27904	0.00012163	-4.3383	-0.001891	-4.0593	-0.0017694	435.8749215131217	54.56	0.34016	54.56	54.378	54.718	0					15	7	3	0	0	0	0.025632	1	4409	4409		34.501	8.4375	1	232640			20254	1451	16506	16530	22623	22623					-0.030530583321024096
IQEFIDSYVI	10	Unmodified	_IQEFIDSYVI_					0	0	0			REV__tr|A0A553STF5|A0A553STF5_NIACIHelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04905PE=3SV=1	REV__tr|A0A553STF5|A0A553STF5_NIACIHelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04905PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	613.8237915039062	2	613.818804	1225.62306	1.9793	0.001215	4.0584	0.0024911	6.0378	0.0037061	613.8211310976798	83.462	8.351	83.462	82.264	90.615	0					423	201	4	0	0	0	0.61634	2	8880	8880;8971		20.947	0	1	13312000	+		20255	30955	16507	16531	22624;22625	22624					0.019268442378233885
IQEIEVVI	8	Unmodified	_IQEIEVVI_					0	0	0			REV__tr|A0A7D6ZV05|A0A7D6ZV05_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01865PE=3SV=1	REV__tr|A0A7D6ZV05|A0A7D6ZV05_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01865PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	471.78009033203125	2	471.778951	941.543348	2.0676	0.00097545	0.2446	0.0001154	2.3122	0.0010909	471.7788986605064	134.22	0.78787	134.22	133.86	134.65	0					42	16	4	0	0	0	0.50674	1	15599	15599		76.847	8.3619	1	848840	+		20256	32234	16508	16532	22626	22626					0.070238223544834
IQENIRCTF	9	Unmodified	_IQENIRCTF_					0	0	0		ENST00000487133.1_1_X:119742243-119746116:+|nuORF	ENST00000487133.1_1_X:119742243-119746116:+|nuORF	ENST00000487133.1_1_X:119742243-119746116:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.8099975585938	2	562.281866	1122.54918	1.8124	0.0010191	-0.28492	-0.0001602	1.5275	0.00085886	562.2816599501821	111.38	0.44827	111.38	111.11	111.56	0					22	9	4	0	0	0	0.027462	1	12640	12640		34.173	13.226	1	340010			20257	12637	16509	16533	22627	22627					-0.007194024055252157
IQESGTDSNTF	11	Unmodified	_IQESGTDSNTF_					0	0	0		tr|A0A7D6ZU13|A0A7D6ZU13_9CLOTRadicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22285PE=4SV=1	tr|A0A7D6ZU13|A0A7D6ZU13_9CLOTRadicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22285PE=4SV=1	tr|A0A7D6ZU13|A0A7D6ZU13_9CLOTRadicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22285PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	599.7744750976562	2	599.764757	1197.51496	2.1232	0.0012734	4.3564	0.0026128	6.4795	0.0038862	599.7670565147542	128.63	0.9826	128.63	128.37	129.35	0					40	20	3	0	0	0	0.68757	1	14915	14915		33.922	1.9668	1	574220			20258	35763	16510	16534	22628	22628					-0.0758957208342963
IQETCQLLK	9	Carbamidomethyl (C)	_IQETC(Carbamidomethyl (C))QLLK_	IQETC(1)QLLK		IQETC(93)QLLK		0	1	0		ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	ENSG00000162607|ENST00000339950|USP1	MULTI-MSMS	OvCa99_classI_Rep5	1	566.8056030273438	2	566.805174	1131.59579	1.6936	0.00095992	0.86847	0.00049225	2.562	0.0014522	566.8055867307901	93.611	0.7496	93.611	93.386	94.136	0					30	17	2	0	0	0	0.11471	1	10151	10151		93.195	8.2799	1	9392700			20259	6201	16511	16535	22629	22629	60				0.035260374257632066
IQEWDLKPY	9	Unmodified	_IQEWDLKPY_					0	0	0			REV__tr|A0A553STX7|A0A553STX7_NIACIDUF229domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05935PE=4SV=1	REV__tr|A0A553STX7|A0A553STX7_NIACIDUF229domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05935PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	596.3060302734375	2	596.305864	1190.59717	-0.17714	-0.00010563	-0.56302	-0.00033573	-0.74016	-0.00044136	596.3054687087324	46.961	7.1463	46.961	46.587	53.733	0					374	164	4	0	0	0	0.083631	1	3572	3572		101.6	13.904	1	16604000	+		20260	31021	16512	16536	22630	22630					0.009499947861968394
IQEWFTLVN	9	Unmodified	_IQEWFTLVN_					0	0	0		ENSG00000173442|ENST00000309295|EHBP1L1	ENSG00000173442|ENST00000309295|EHBP1L1	ENSG00000173442|ENST00000309295|EHBP1L1	MULTI-MSMS	OvCa9_classI_Rep3	3	575.2994384765625	2	575.300581	1148.58661	-0.91231	-0.00052485	-2.994	-0.0017225	-3.9064	-0.0022473	575.2987938975226	98.512	0.72591	96.752	96.417	97.143	-1.7595					43	13	4	0	0	0	0.3076	1	6581	6581		62.107	3.8775	1	1521200			20261	7376	16513	16537	22631	22631					0.01826012131778043
IQFARILL	8	Unmodified	_IQFARILL_					0	0	0		L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|340|3|anti-sense	L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|340|3|anti-sense	L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|340|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	487.2825622558594	2	487.313295	972.612037	-1.4545	-0.0007088	-0.20204	-9.8455E-05	-1.6565	-0.00080726	487.31279617947337	83.184	0.76939	80.888	80.629	81.399	-2.2963					20	15	2	0	0	0	0.028476	1	4721	4721		25.45	4.9683	1	26146			20262	14749	16514	16538	22632	22632					0.12463531444836917
IQFDDEYE	8	Unmodified	_IQFDDEYE_					0	0	0			REV__ENSG00000152954|ENST00000378491|NRSN1	REV__ENSG00000152954|ENST00000378491|NRSN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8094482421875	2	529.719287	1057.42402	-0.58931	-0.00031217	1.6023	0.00084877	1.013	0.00053661	529.72108673093	104.65	0.29189	104.65	104.49	104.79	0					15	6	3	0	0	0	0.028476	1	11734	11734		38.806	6.8513	1	150620	+		20263	20314	16515	16539	22633	22633					-0.1023941606090375
IQFKGQTR	8	Unmodified	_IQFKGQTR_					0	0	0			REV__ENSG00000140519|ENST00000268122|RHCG	REV__ENSG00000140519|ENST00000268122|RHCG	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.2822570800781	2	489.279983	976.545414	2.5921	0.0012683	1.5193	0.00074337	4.1114	0.0020116	489.2805736268781	130.23	1.0326	128.75	128.46	129.5	-1.478					38	20	3	0	0	0	0.71267	1	12500	12500		40.778	5.1599	1	73183	+		20264	19681	16516	16540	22634	22634					0.056202958829544514
IQFLKELVE	9	Unmodified	_IQFLKELVE_					0	0	0			REV__ST3GAL2-COG4|3|fusion	REV__ST3GAL2-COG4|3|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.3101806640625	2	559.826432	1117.63831	1.2663	0.0007089	1.6032	0.0008975	2.8695	0.0016064	560.3280996423516	66.867	0.51212	66.867	66.661	67.173	0					19	12	3	0	0	0	0.027462	1	6257	6257		27.882	17.017	1	275010	+		20265	29457	16517	16541	22635	22635					0.08419755825661923
IQFLKELVE	9	Unmodified	_IQFLKELVE_					0	0	0			REV__ST3GAL2-COG4|3|fusion	REV__ST3GAL2-COG4|3|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	559.826432	1117.63831	0.21246	0.00011894	8.8049	0.0049292	9.0174	0.0050482	559.8309716798946	69.799	0.5472	67.228	67.015	67.563	-2.5707	0.18054	0.004096	NaN	20.947	16	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16727	+		20266	29457	16517	16541							0.08419755825661923
IQGEGGIIIP	10	Unmodified	_IQGEGGIIIP_					0	0	0		tr|A0A7D6VRI8|A0A7D6VRI8_9CLOTPutrescineaminotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02355PE=3SV=1	tr|A0A7D6VRI8|A0A7D6VRI8_9CLOTPutrescineaminotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02355PE=3SV=1	tr|A0A7D6VRI8|A0A7D6VRI8_9CLOTPutrescineaminotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02355PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	499.7886047363281	2	498.78985	995.565146	0.032773	1.6347E-05	-2.6432	-0.0013184	-2.6105	-0.0013021	498.78956440605833	118.98	1.288	117.95	117.58	118.87	-1.0271					73	25	4	0	0	0	0.67931	1	8995	8995		32.812	1.2826	1	100180			20267	34936	16519	16542	22636	22636					0.06718627103043673
IQGGKHREN	9	Unmodified	_IQGGKHREN_					0	0	0		nc|ENSG00000099250|O14786-3|NRP1;nc|ENSG00000099250|O14786-2|NRP1;ENSG00000099250|ENST00000374867|NRP1	nc|ENSG00000099250|O14786-3|NRP1	nc|ENSG00000099250|O14786-3|NRP1	MULTI-MSMS	OvCa9_classI_Rep2	2	519.774658203125	2	519.775597	1037.53664	1.2718	0.00066103	-4.4112	-0.0022928	-3.1394	-0.0016318	519.7732287380198	127.54	1.531	127.31	126.99	128.52	-0.23578					82	30	5	0	0	0	0.28934	1	12480	12480		64.207	12.872	1	538520			20268	1962	16520	16543	22637	22637					0.019373222464764694
IQGGRLGLL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))IQGGRLGLL_					1	0	0			REV__ENST00000306585.8_1_16:69152138-69152237:-|nuORF	REV__ENST00000306585.8_1_16:69152138-69152237:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	484.79864501953125	2	484.798009	967.581465	-0.83208	-0.00040339	0.012931	6.2689E-06	-0.81914	-0.00039712	484.7981247180956	97.675	2.4444	95.916	95.105	97.55	-1.7595					95	47	4	0	0	0	0.21395	1	6492	6492		73.975	19.198	1	1805800	+		20269	24296	16521	16544	22638	22638					0.09637753059803345
IQGIKRLSPE	10	Unmodified	_IQGIKRLSPE_					0	0	0		ENSG00000180251|ENST00000295269|SLC9A4	ENSG00000180251|ENST00000295269|SLC9A4	ENSG00000180251|ENST00000295269|SLC9A4	MULTI-SECPEP	OvCa9_classI_Rep3	3	570.8236083984375	2	570.840405	1139.66626	-0.79866	-0.00045591	-0.3055	-0.00017439	-1.1042	-0.0006303	571.3402454453577	81.38	0.30198	79.057	78.854	79.156	-2.3226					8	5	2	0	0	0	0.026802	1	4515	4515		19.997	0	1	8719.4			20270	7864	16522	16545	22639	22639					0.10201078805744146
IQGTYLNVI	9	Unmodified	_IQGTYLNVI_					0	0	0		L1PB1_dup435|chr1:148902763-148905178:-|1.8547645190966555|0.2878265206874703|2.69|429.0|4|1|sense;L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|147|3|sense	L1PB1_dup435|chr1:148902763-148905178:-|1.8547645190966555|0.2878265206874703|2.69|429.0|4|1|sense	L1PB1_dup435|chr1:148902763-148905178:-|1.8547645190966555|0.2878265206874703|2.69|429.0|4|1|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	510.7890625	2	510.78985	1019.56515	-1.035	-0.00052868	0.90213	0.0004608	-0.13289	-6.7877E-05	510.790192219172	139.31	1.2779	139.08	138.81	140.09	-0.22696					65	25	4	0	0	0	0.64427	1	13950	13950		26.693	1.1189	1	231800			20271	14774	16523	16546	22640	22640					0.056146271030456774
IQGVIRKSQAR	11	Unmodified	_IQGVIRKSQAR_					0	0	0			REV__ENSG00000182179|ENST00000333486|UBA7	REV__ENSG00000182179|ENST00000333486|UBA7	MULTI-MSMS	OvCa9_classI_Rep3	3	628.3823852539062	2	628.383303	1254.75205	-4.0512	-0.0025457	2.8064	0.0017635	-1.2447	-0.00078217	628.3849132400738	150.53	4.7174	149.58	148	152.71	-0.95647					178	94	2	0	0	0	0.72324	1	12787	12787		21.686	0.73882	1	419100	+		20272	22267	16524	16547	22641	22641					0.1348666371127365
IQGVKHLADVT	11	Unmodified	_IQGVKHLADVT_					0	0	0			REV__ENSG00000106268|ENST00000356714|NUDT1	REV__ENSG00000106268|ENST00000356714|NUDT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	591.3599243164062	2	590.837862	1179.66117	1.5205	0.00089838	1.2392	0.00073217	2.7597	0.0016306	590.8381376672618	130.53	0.38383	130.53	130.34	130.72	0					10	7	2	0	0	0	0.025638	1	15130	15130		23.523	7.0495	1	67978	+		20273	17787	16525	16548	22642	22642					0.07852774943125951
IQHAWLTY	8	Unmodified	_IQHAWLTY_					0	0	0			REV__tr|A0A7D6ZET8|A0A7D6ZET8_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12265PE=4SV=1	REV__tr|A0A7D6ZET8|A0A7D6ZET8_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12265PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.281494140625	2	516.269084	1030.52362	1.0706	0.00055272	1.2627	0.0006519	2.3333	0.0012046	516.2689138624927	106.61	0.15707	105.35	105.27	105.43	-1.267					4	2	2	0	0	0	0.028476	1	7522	7522		26.796	9.4311	1	3909.7	+		20274	31950	16526	16549	22643	22643					0.009574911343861459
IQHAWLTYYDI	11	Unmodified	_IQHAWLTYYDI_					0	0	0			REV__tr|A0A7D6ZET8|A0A7D6ZET8_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12265PE=4SV=1	REV__tr|A0A7D6ZET8|A0A7D6ZET8_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12265PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.79364013671875	3	474.906594	1421.69795	-0.65226	-0.00030976	-2.6792	-0.0012724	-3.3314	-0.0015821	474.905075026431	72.247	0.58704	68.791	68.509	69.096	-3.4563					22	11	3	0	0	0	0.025767	1	5530	5530		18.531	0	1	49991	+		20275	31950	16527	16550	22644	22644					0.003970267690647233
IQHDLIFSL	9	Unmodified	_IQHDLIFSL_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MULTI-MSMS	OvCa9_classI_Rep2	2	543.3023071289062	2	543.303124	1084.5917	-0.89278	-0.00048505	0.37574	0.00020414	-0.51704	-0.00028091	543.3033572332077	122.04	1.1862	121.82	121.52	122.71	-0.21803					53	23	4	0	0	0	0.070405	1	11809	11809		107.01	5.4068	1	115340			20276	2095	16528	16551	22645	22645					0.05278315994382865
IQHLIPKI	8	Unmodified	_IQHLIPKI_					0	0	0		ENST00000471700.6_1_14:24612807-24615772:-|nuORF;ENSG00000100911|ENST00000216802|PSME2;ENST00000559359.1_1_14:24613399-24613677:-|nuORF;ENST00000453033.1_1_13:49345602-49345743:+|nuORF;ENST00000442824.1_1_5:97549420-97549822:+|nuORF	ENST00000471700.6_1_14:24612807-24615772:-|nuORF	ENST00000471700.6_1_14:24612807-24615772:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	481.3149108886719	2	481.313295	960.612037	2.6242	0.0012631	-0.38028	-0.00018303	2.2439	0.00108	481.3129718427918	75.743	1.4663	75.743	75.251	76.718	0					81	36	4	0	0	0	0.17531	1	7538	7538		128.86	40.218	1	13309000			20277	2121	16529	16552	22646	22646					0.130155314448416
IQHPTASLI	9	Unmodified	_IQHPTASLI_					0	0	0		nc|ENSG00000132141|Q92526-3|CCT6B;ENSG00000132141|ENST00000314144|CCT6B;ENST00000419314.5_1_7:64498910-64527388:+|nuORF;ENSG00000146731|ENST00000275603|CCT6A	nc|ENSG00000132141|Q92526-3|CCT6B;ENSG00000146731|ENST00000275603|CCT6A	ENSG00000146731|ENST00000275603|CCT6A	MULTI-MSMS	OvCa99_classI_Rep5	1	490.2839660644531	2	490.282192	978.549831	2.2358	0.0010961	0.16212	7.9483E-05	2.3979	0.0011756	490.2821137321538	76.081	0.5163	76.081	75.764	76.28	0					35	12	4	0	0	0	0.1804	1	7598	7598		79.713	2.866	1	2740200			20278	5303;4111	16530	16553	22647	22647					0.05969760305856653
IQHPTASLI	9	Unmodified	_IQHPTASLI_					0	0	0		nc|ENSG00000132141|Q92526-3|CCT6B;ENSG00000132141|ENST00000314144|CCT6B;ENST00000419314.5_1_7:64498910-64527388:+|nuORF;ENSG00000146731|ENST00000275603|CCT6A	nc|ENSG00000132141|Q92526-3|CCT6B;ENSG00000146731|ENST00000275603|CCT6A	ENSG00000146731|ENST00000275603|CCT6A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	490.282192	978.549831	-0.66273	-0.00032492	1.3654	0.00066942	0.70264	0.00034449	490.2824386405212	78.578	0.50414	76.225	75.949	76.453	-2.3527	0.072228	0.0010219	NaN	79.713	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11659			20279	5303;4111	16530	16553							0.05969760305856653
IQHSEFEEV	9	Unmodified	_IQHSEFEEV_					0	0	0		nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;ENSG00000108175|ENST00000334512|ZMIZ1	nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	MULTI-MSMS	OvCa99_classI_Rep5	1	559.2626342773438	2	559.261653	1116.50875	-0.19691	-0.00011012	0.10604	5.9306E-05	-0.090867	-5.0819E-05	559.2616797199228	66.257	0.64391	66.257	66.096	66.739	0					30	15	3	0	0	0	0.094616	1	6140	6140		98.629	13.714	1	2697000			20280	2639	16531	16554	22648	22648					-0.0448404552428201
IQHSEFEEV	9	Unmodified	_IQHSEFEEV_					0	0	0		nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;ENSG00000108175|ENST00000334512|ZMIZ1	nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	559.261653	1116.50875	0.16412	9.1787E-05	-0.53263	-0.00029788	-0.36851	-0.00020609	559.2607694128591	69.929	0.48883	66.447	66.249	66.738	-3.4812	0.095232	-0.00063043	NaN	98.629	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39237			20281	2639	16531	16554							-0.0448404552428201
IQIALVIVF	9	Unmodified	_IQIALVIVF_					0	0	0		nc|ENSG00000111666|Q8WUD6-2|CHPT1;ENSG00000111666|ENST00000229266|CHPT1	nc|ENSG00000111666|Q8WUD6-2|CHPT1	nc|ENSG00000111666|Q8WUD6-2|CHPT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7727966308594	2	508.331153	1014.64775	2.2665	0.0011521	-4.4832	-0.002279	-2.2167	-0.0011268	508.32868184092166	76.315	0.28967	76.315	76.115	76.405	0					10	6	2	0	0	0	0.027462	1	7656	7656		19.36	6.4008	1	154550			20282	2840	16532	16555	22649	22649					0.1410156890183316
IQIANPILK	9	Unmodified	_IQIANPILK_					0	0	0			REV__GRAMD1A-FXYD3|5|fusion	REV__GRAMD1A-FXYD3|5|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.27886962890625	2	505.32386	1008.63317	-0.39381	-0.000199	-0.49214	-0.00024869	-0.88596	-0.0004477	505.3234966244452	104.75	0.729	104.75	104.45	105.18	0					32	16	3	0	0	0	0.027433	1	11737	11737		51.335	7.2187	1	1067500	+		20283	17207	16533	16556	22650	22650					0.12919496753704607
IQIIEKPPVGT	11	Unmodified	_IQIIEKPPVGT_					0	0	0		ENSG00000122122|ENST00000356892|SASH3	ENSG00000122122|ENST00000356892|SASH3	ENSG00000122122|ENST00000356892|SASH3	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8538818359375	2	597.858264	1193.70197	-3.1766	-0.0018991	0.037639	2.2503E-05	-3.1389	-0.0018766	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.72473	1	15239	15239		19.104	0	1	436470			20284	3518	16534	16557	22651	22651					0.11287116262747077
IQIKFAEMGR	10	Unmodified	_IQIKFAEMGR_					0	0	0			REV__ENST00000407916.2_1_7:55004007-55004829:+|nuORF	REV__ENST00000407916.2_1_7:55004007-55004829:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	595.8505249023438	2	596.828983	1191.64341	0.34735	0.00020731	-2.9773	-0.0017769	-2.6299	-0.0015696	597.3269723314662	87.197	0.14884	85.766	85.642	85.791	-1.4311					4	2	2	0	0	0	0.026994	1	7596	7596		19.104	3.4617	1	5160.2	+		20285	25458	16535	16558	22652	22652					0.0552573641662093
IQIKYGNL	8	Unmodified	_IQIKYGNL_					0	0	0			REV__tr|A0A7D6ZV85|A0A7D6ZV85_9CLOTHistidine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=hisSPE=3SV=1	REV__tr|A0A7D6ZV85|A0A7D6ZV85_9CLOTHistidine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=hisSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	474.9175109863281	2	474.779285	947.544017	-0.1308	-6.21E-05	0.048999	2.3264E-05	-0.081799	-3.8837E-05	474.77884732778	93.266	1.0339	92.098	91.855	92.889	-1.168					41	19	3	0	0	0	0.028476	1	8353	8353		24.203	0	1	35611	+		20286	32244	16536	16559	22653	22653					0.06814661794192034
IQILFHIF	8	Unmodified	_IQILFHIF_					0	0	0			REV__ENST00000536441.6_2_11:94911974-94917625:-|nuORF	REV__ENST00000536441.6_2_11:94911974-94917625:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2597045898438	2	515.807845	1029.60114	-1.2407	-0.00063994	-4.3684	-0.0022532	-5.609	-0.0028932	515.8059725301068	44.172	0.6195	44.172	43.909	44.528	0					22	13	2	0	0	0	0.028476	1	2984	2984		19.36	0	1	425120	+		20287	27297	16537	16560	22654	22654					0.08752129070558112
IQILFHIF	8	Unmodified	_IQILFHIF_					0	0	0			REV__ENST00000536441.6_2_11:94911974-94917625:-|nuORF	REV__ENST00000536441.6_2_11:94911974-94917625:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.807845	1029.60114	-0.31123	-0.00016053	-1.3409	-0.00069163	-1.6521	-0.00085216	515.8078045681877	46.854	0.44648	44.144	43.993	44.44	-2.7097	-0.013683	0.0020022	NaN	19.36	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11596	+		20288	27297	16537	16560							0.08752129070558112
IQILLAEL	8	Unmodified	_IQILLAEL_					0	0	0			REV__MSH2|p.G751Efs*12|1|0.6|ENSG00000095002|chr2:47478311-47478311|G/-|frameshift_variant	REV__MSH2|p.G751Efs*12|1|0.6|ENSG00000095002|chr2:47478311-47478311|G/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.26123046875	2	456.791861	911.569169	-0.065339	-2.9846E-05	-1.6237	-0.00074169	-1.689	-0.00077153	456.79080176857497	47.327	0.3874	47.327	47.208	47.595	0					11	8	2	0	0	0	0.028476	1	3386	3386		17.365	0.89182	1	85680	+		20289	17281	16538	16561	22655	22655					0.10984716596738053
IQIMKVEEI	9	Unmodified	_IQIMKVEEI_					0	0	0		ENSG00000105640|ENST00000222247|RPL18A;ENST00000401937.3_1_1:33445851-33446070:+|nuORF	ENSG00000105640|ENST00000222247|RPL18A	ENSG00000105640|ENST00000222247|RPL18A	MULTI-MSMS	OvCa99_classI_Rep5	1	551.8160400390625	2	551.812467	1101.61038	2.3717	0.0013087	0.04814	2.6564E-05	2.4198	0.0013353	551.8121918211216	100.63	0.66044	100.63	100.4	101.06	0					26	15	3	0	0	0	0.26076	1	11168	11168		67.494	5.3863	1	1760300			20290	2477	16539	16562	22656	22656					0.06364109573928545
IQIPLHHI	8	Unmodified	_IQIPLHHI_					0	0	0			REV__ENST00000369729.7_1_10:105881840-105883475:+|nuORF	REV__ENST00000369729.7_1_10:105881840-105883475:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.242919921875	2	485.795269	969.575986	-0.192	-9.3272E-05	-4.1308	-0.0020067	-4.3228	-0.0021	485.7932668219843	58.645	0.44828	58.645	58.403	58.852	0					16	10	2	0	0	0	0.028476	1	4982	4982		35.201	6.9464	1	614120	+		20291	24945	16540	16563	22657	22657					0.08998074267992706
IQIRQKRWRTG	11	Unmodified	_IQIRQKRWRTG_					0	0	0			REV__ENST00000494626.6_1_10:126727653-126848967:-|nuORF	REV__ENST00000494626.6_1_10:126727653-126848967:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	481.28131103515625	3	481.288143	1440.8426	-6.3383	-0.0030506	-2.8993	-0.0013954	-9.2377	-0.004446	481.2870113487174	158.36	2.5052	157.1	156.12	158.63	-1.267					137	61	3	0	0	0	0.72552	1	13629	13629		8.7993	2.4784	1	42599	+		20292	26730	16541	16564	22658	22658					0.13981132759522552
IQIRTRRE	8	Unmodified	_IQIRTRRE_					0	0	0			REV__ENSG00000283205|ENST00000636536|unknown	REV__ENSG00000283205|ENST00000636536|unknown	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.2940673828125	2	536.322714	1070.63087	-1.9823	-0.0010632	-2.2862	-0.0012261	-4.2685	-0.0022893	536.3203199737554	72.087	0.39079	68.631	68.46	68.851	-3.4563					11	7	2	0	0	0	0.028476	1	5533	5533		21.96	6.3181	1	47450	+		20293	23662	16542	16565	22659	22659					0.09838461068602555
IQISEVPLKR	10	Unmodified	_IQISEVPLKR_					0	0	0			REV__ENST00000589219.1_1_17:40925493-40926767:+|nuORF	REV__ENST00000589219.1_1_17:40925493-40926767:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	591.8650512695312	2	591.86388	1181.71321	0.72408	0.00042856	0.6408	0.00037927	1.3649	0.00080783	591.8641978183085	65.182	2.2339	62.236	61.844	64.078	-2.9459					105	43	4	0	0	0	0.69073	1	2611	2611		31.53	1.0262	1	184170	+		20294	19018	16543	16566	22660	22660					0.1296193835687518
IQIVGLTELQ	10	Unmodified	_IQIVGLTELQ_					0	0	0		ENST00000592793.5_1_16:5121850-5123284:+|nuORF;ENSG00000033011|ENST00000262374|ALG1	ENST00000592793.5_1_16:5121850-5123284:+|nuORF	ENST00000592793.5_1_16:5121850-5123284:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	556.794921875	2	557.329339	1112.64412	1.1173	0.0006227	-2.8657	-0.0015972	-1.7484	-0.00097446	557.3283972919659	115	1.1139	113.6	113.25	114.37	-1.3977					63	21	4	0	0	0	0.026462	1	10720	10720		79.489	7.2458	1	111360			20295	1071	16544	16567	22661	22661					0.0923085433732922
IQIVGLTELQ	10	Unmodified	_IQIVGLTELQ_					0	0	0		ENST00000592793.5_1_16:5121850-5123284:+|nuORF;ENSG00000033011|ENST00000262374|ALG1	ENST00000592793.5_1_16:5121850-5123284:+|nuORF	ENST00000592793.5_1_16:5121850-5123284:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	557.329339	1112.64412	0.88581	0.00049369	-2.351	-0.0013103	-1.4652	-0.00081657	557.3284414721637	113.67	1.037	113.55	113.27	114.31	-0.11777	-0.040002	-0.000202	NaN	79.489	64	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77685			20296	1071	16544	16567							0.0923085433732922
IQIVPRVSQ	9	Unmodified	_IQIVPRVSQ_					0	0	0		ENST00000528393.1_1_11:79700401-79700518:+|nuORF	ENST00000528393.1_1_11:79700401-79700518:+|nuORF	ENST00000528393.1_1_11:79700401-79700518:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.7962646484375	2	520.316566	1038.61858	0.074968	3.9007E-05	-0.71594	-0.00037251	-0.64097	-0.00033351	520.3158859158123	80.685	1.0774	78.363	77.776	78.854	-2.3226					44	20	3	0	0	0	0.027462	1	4412	4412		27.882	5.9224	1	60411			20297	13253	16545	16568	22662	22662					0.10081424605550637
IQKEITILDLP	11	Unmodified	_IQKEITILDLP_					0	0	0			REV__nc|ENSG00000116539|Q9NR48|ASH1L	REV__nc|ENSG00000116539|Q9NR48|ASH1L	MULTI-MSMS	OvCa9_classI_Rep2	2	641.882080078125	2	641.884478	1281.7544	-4.0037	-0.0025699	0.58672	0.00037661	-3.4169	-0.0021933	642.3862707583961	149.94	3.9275	149.71	147.52	151.45	-0.22696					225	78	5	0	0	0	0.72324	1	15243	15243		21.686	2.5822	1	222110	+		20298	18305	16546	16569	22663	22663					0.12479654605704127
IQKEKKKSK	9	Unmodified	_IQKEKKKSK_					0	0	0		nc|ENSG00000168356|Q9UI33-3|SCN11A;ENSG00000168356|ENST00000302328|SCN11A;SCN11A|p.I1370Rfs*14|1|0.04|ENSG00000168356|chr3:38850700-38850701|-/AGCG|frameshift_variant;nc|ENSG00000168356|Q9UI33-2|SCN11A	nc|ENSG00000168356|Q9UI33-3|SCN11A	nc|ENSG00000168356|Q9UI33-3|SCN11A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	558.8174438476562	2	558.858598	1115.70264	-0.02233	-1.248E-05	-0.80581	-0.00045033	-0.82814	-0.00046281	558.8582044453744	45.976	0.26035	42.904	42.718	42.979	-3.0724					10	4	3	0	0	0	0.027462	1	2377	2377		19.997	1.7347	1	23199			20299	6895	16547	16570	22664	22664					0.14941955702465748
IQKELVDP	8	Unmodified	_IQKELVDP_					0	0	0		ENST00000515047.5_1_5:111505996-111519813:-|nuORF;ENST00000507810.5_1_5:111479536-111545647:-|nuORF;ENSG00000129595|ENST00000261486|EPB41L4A	ENST00000515047.5_1_5:111505996-111519813:-|nuORF	ENST00000515047.5_1_5:111505996-111519813:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.7467041015625	2	471.26875	940.522947	-0.49792	-0.00023465	-0.82074	-0.00038679	-1.3187	-0.00062144	471.267994125835	64.302	0.57811	64.302	64.132	64.71	0					20	13	2	0	0	0	0.028476	1	5875	5875		34.173	1.3601	1	516770			20300	3937	16548	16571	22665	22665					0.05030651694664812
IQKFALFDEKH	11	Unmodified	_IQKFALFDEKH_					0	0	0		ENSG00000122728|ENST00000242310|TAF1L;TAF1L|p.I1514Qfs*6|1|0.03|ENSG00000122728|chr9:32631039-32631040|AT/-|frameshift_variant;TAF1L|p.D1494Ifs*14|1|0.17|ENSG00000122728|chr9:32631100-32631100|C/-|frameshift_variant	ENSG00000122728|ENST00000242310|TAF1L	ENSG00000122728|ENST00000242310|TAF1L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.7764892578125	3	459.250472	1374.72959	-1.2117	-0.00055648	-2.2896	-0.0010515	-3.5013	-0.001608	459.24892106974454	45.683	0.47117	42.644	42.438	42.909	-3.0385					10	8	2	0	0	0	0.02595	1	2356	2356		21.032	0	1	8615.5			20301	3551	16549	16572	22666	22666					0.05721019522957249
IQKFPGVI	8	Unmodified	_IQKFPGVI_					0	0	0		ENST00000301740.12_1_16:2820975-2821305:+|nuORF	ENST00000301740.12_1_16:2820975-2821305:+|nuORF	ENST00000301740.12_1_16:2820975-2821305:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	451.2793884277344	2	451.278921	900.543289	2.3933	0.00108	-2.6216	-0.0011831	-0.22834	-0.00010304	451.277592402024	110.6	2.0227	110.43	110.06	112.08	-0.17237					101	40	4	0	0	0	0.63104	1	10437	10437		57.453	5.1535	1	1089100			20302	10190	16550	16573	22667	22667					0.08903867145136246
IQKFPGVI	8	Unmodified	_IQKFPGVI_					0	0	0		ENST00000301740.12_1_16:2820975-2821305:+|nuORF	ENST00000301740.12_1_16:2820975-2821305:+|nuORF	ENST00000301740.12_1_16:2820975-2821305:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	451.2788391113281	2	451.278921	900.543289	1.6818	0.00075895	-1.7921	-0.00080876	-0.11036	-4.9804E-05	451.2780132354674	111.71	1.8717	110.61	110.2	112.07	-1.1038					111	37	4	0	0	0	0.69415	1	8147	8147		44.531	2.0566	1	1060800			20303	10190	16550	16573	22668	22668					0.08903867145136246
IQKGKGPLS	9	Unmodified	_IQKGKGPLS_					0	0	0			REV__ENST00000486147.1_1_6:26087668-26093021:+|nuORF	REV__ENST00000486147.1_1_6:26087668-26093021:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	463.8064270019531	2	464.284734	926.554916	2.9685	0.0013782	-2.9297	-0.0013602	0.038841	1.8033E-05	464.28426747763245	97.837	0.5101	97.837	97.611	98.121	0					21	11	3	0	0	0	0.027462	1	10783	10783		23.042	3.6825	1	380110	+		20304	26580	16551	16574	22669	22669					0.08870064168456793
IQKGKGPLS	9	Unmodified	_IQKGKGPLS_					0	0	0			REV__ENST00000486147.1_1_6:26087668-26093021:+|nuORF	REV__ENST00000486147.1_1_6:26087668-26093021:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	464.284734	926.554916	-0.57041	-0.00026483	0.44806	0.00020803	-0.12236	-5.6808E-05	464.2842981341403	99.827	0.21057	98.142	98.038	98.248	-1.685	0.15213	0.001632	NaN	29.15	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7615.7	+		20305	26580	16551	16574							0.08870064168456793
IQKHEETL	8	Unmodified	_IQKHEETL_					0	0	0		ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295	ENSG00000166004|ENST00000325212|CEP295	ENSG00000166004|ENST00000325212|CEP295	MULTI-MSMS	OvCa99_classI_Rep5	1	499.2701416015625	2	499.269281	996.52401	1.2127	0.00060547	0.85914	0.00042894	2.0719	0.0010344	499.2693682768279	80.879	0.75697	80.879	80.615	81.372	0					39	17	3	0	0	0	0.45246	1	8306	8306		82.305	5.5309	1	1297200			20306	6628	16552	16575	22670	22670					0.025608660635725755
IQKITHLR	8	Unmodified	_IQKITHLR_					0	0	0			REV__nc|ENSG00000104067|Q07157-2|TJP1	REV__nc|ENSG00000104067|Q07157-2|TJP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.29931640625	2	504.819276	1007.624	2.5469	0.0012857	-0.74749	-0.00037734	1.7994	0.00090839	504.81869469922316	100.65	0.78616	100.65	100.36	101.15	0					39	18	3	0	0	0	0.028476	1	11160	11160		56.721	0	1	3073800	+		20307	17643	16553	16576	22671	22671					0.12049148188020808
IQKLNRTV	8	Unmodified	_IQKLNRTV_					0	0	0		ENSG00000144229|ENST00000409968|THSD7B	ENSG00000144229|ENST00000409968|THSD7B	ENSG00000144229|ENST00000409968|THSD7B	MULTI-MSMS	OvCa9_classI_Rep2	2	486.3054504394531	2	486.303458	970.592364	0.60247	0.00029298	2.7724	0.0013482	3.3749	0.0016412	486.3047947264386	124.97	2.7662	124.74	124.37	127.13	-0.2359					156	55	5	0	0	0	0.60331	1	12142	12142		63.306	2.3343	1	3410600			20308	5136	16554	16577	22672	22672					0.10589155434092845
IQKMKVPLY	9	Unmodified	_IQKMKVPLY_					0	0	0		NAV3|p.A613Gfs*64|1|0.03|ENSG00000067798|chr12:78007376-78007397|CTGTCCAACTCCCTCAACAGCA/-|frameshift_variant	NAV3|p.A613Gfs*64|1|0.03|ENSG00000067798|chr12:78007376-78007397|CTGTCCAACTCCCTCAACAGCA/-|frameshift_variant	NAV3|p.A613Gfs*64|1|0.03|ENSG00000067798|chr12:78007376-78007397|CTGTCCAACTCCCTCAACAGCA/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.2655029296875	2	560.33337	1118.65219	1.7354	0.0009724	-1.5014	-0.00084129	0.23398	0.00013111	560.3321196023597	143.24	0.44481	143.24	143.07	143.51	0					12	8	2	0	0	0	0.027462	1	16743	16743		37.159	15.199	1	31456			20309	14856	16555	16578	22673	22673					0.09760710053114963
IQKSKKNLAVI	11	Unmodified	_IQKSKKNLAVI_					0	0	0			REV__ENSG00000101440|ENST00000374954|ASIP	REV__ENSG00000101440|ENST00000374954|ASIP	MULTI-MSMS	OvCa9_classI_Rep4_	4	621.3942260742188	2	621.40063	1240.78671	-6.5284	-0.0040568	-4.4502	-0.0027653	-10.979	-0.0068221	621.3977749014244	164.14	0.2141	162.51	162.36	162.57	-1.6336					18	4	5	0	0	0	0.63561	1	16213	16213		41.427	3.6151	1	1133800	+		20310	17503	16556	16579	22674	22674					0.1759448679936213
IQKSKKNLAVI	11	Unmodified	_IQKSKKNLAVI_					0	0	0			REV__ENSG00000101440|ENST00000374954|ASIP	REV__ENSG00000101440|ENST00000374954|ASIP	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	621.40063	1240.78671	-6.5284	-0.0040568	-4.4502	-0.0027653	-10.979	-0.0068221	621.3977749014244	164.14	0.2141	162.51	162.36	162.57	-1.6336	-0.047814	-0.00051752	NaN	41.427	18	4	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1133800	+		20311	17503	16556	16579							0.1759448679936213
IQKTKKLYI	9	Unmodified	_IQKTKKLYI_					0	0	0		ENSA-SEC22B|3|fusion;ENSA-SEC22B|2|fusion;ENSG00000265808|ENST00000578049|SEC22B;ENSA-SEC22B|1|fusion;ENSA-SEC22B|4|fusion	ENSA-SEC22B|3|fusion	ENSA-SEC22B|3|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	567.8658447265625	2	567.865892	1133.71723	-0.66686	-0.00037868	0.5878	0.00033379	-0.07905	-4.489E-05	567.8660781572373	41.965	0.60638	41.965	41.766	42.372	0					39	13	4	0	0	0	0.066102	1	2660	2660		109.48	24.318	1	904960			20312	798	16557	16580	22675	22675					0.1557202785058962
IQKTKVGYIV	10	Unmodified	_IQKTKVGYIV_					0	0	0			REV__ENSG00000277932|ENST00000610445|OR52E5	REV__ENSG00000277932|ENST00000610445|OR52E5	MULTI-SECPEP	OvCa9_classI_Rep2	2	574.835693359375	2	574.855524	1147.69649	0.97986	0.00056328	3.3435	0.001922	4.3234	0.0024853	574.8571484393887	90.007	0.24795	88.705	88.482	88.73	-1.302					7	4	2	0	0	0	0.026548	1	7935	7935		63.534	22.961	1	32915	+		20313	23637	16558	16581	22676	22676					0.1285543747092106
IQKVGSLPP	9	Unmodified	_IQKVGSLPP_					0	0	0			REV__ENSG00000145362|ENST00000357077|ANK2	REV__ENSG00000145362|ENST00000357077|ANK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	469.8065185546875	2	469.78711	937.559667	1.9902	0.00093496	0.44846	0.00021068	2.4386	0.0011456	469.78704899342694	87.677	0.33179	87.677	87.463	87.794	0					11	7	2	0	0	0	0.026235	1	9287	9287		120.62	14.206	1	143610	+		20314	19961	16559	16582	22677	22677					0.08838948311222339
IQKYPIAIL	9	Unmodified	_IQKYPIAIL_					0	0	0		tr|A0A7D7A1L1|A0A7D7A1L1_9CLOTFAD-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12800PE=3SV=1	tr|A0A7D7A1L1|A0A7D7A1L1_9CLOTFAD-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12800PE=3SV=1	tr|A0A7D7A1L1|A0A7D7A1L1_9CLOTFAD-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12800PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.8040771484375	2	529.83406	1057.65357	0.30367	0.00016089	-1.3275	-0.00070336	-1.0238	-0.00054247	529.833369210489	105.22	0.26099	103.87	103.68	103.94	-1.3482					5	4	2	0	0	0	0.027255	1	7366	7366		92.191	3.5478	1	10525			20315	36041	16560	16583	22678	22678					0.12704667413504467
IQLDRPEP	8	Unmodified	_IQLDRPEP_					0	0	0			REV__ENSG00000100368|ENST00000403662|CSF2RB	REV__ENSG00000100368|ENST00000403662|CSF2RB	MULTI-SECPEP	OvCa9_classI_Rep2	2	483.82598876953125	2	484.263999	966.513445	-0.49963	-0.00024195	-2.8345	-0.0013726	-3.3341	-0.0016146	484.2620462619587	77.288	1.041	75.499	74.843	75.884	-1.7894					23	19	2	0	0	0	0.028476	1	6384	6384		60.972	7.6205	1	11088	+		20316	17408	16561	16584	22679	22679					0.028848834091377284
IQLEFVGAP	9	Unmodified	_IQLEFVGAP_					0	0	0			REV__DLL3|p.S348Rfs*7|1|0.19|ENSG00000090932|chr19:39505399-39505400|-/CGCGGTGCGG|frameshift_variant	REV__DLL3|p.S348Rfs*7|1|0.19|ENSG00000090932|chr19:39505399-39505400|-/CGCGGTGCGG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.7621765136719	2	487.271293	972.528032	0.081322	3.9626E-05	-3.5487	-0.0017292	-3.4674	-0.0016896	487.26891993247796	59.107	0.74553	55.715	55.502	56.248	-3.392					20	14	3	0	0	0	0.027456	1	3956	3956		30.504	0	1	36989	+		20317	16306	16562	16585	22680	22680					0.040669555572890204
IQLFMLINKR	10	Unmodified	_IQLFMLINKR_					0	0	0			REV__tr|A0A7D6ZVT7|A0A7D6ZVT7_9CLOTBatAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05445PE=4SV=1	REV__tr|A0A7D6ZVT7|A0A7D6ZVT7_9CLOTBatAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05445PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	425.92169189453125	3	425.925043	1274.7533	-1.168	-0.0004975	-4.4738	-0.0019055	-5.6418	-0.002403	425.92310380992353	54.918	1.5423	52.104	51.772	53.314	-2.8139					82	30	4	0	0	0	0.64812	1	3798	3798		36.318	2.396	1	427660	+		20318	32262	16563	16586	22681	22681					0.12691161755810754
IQLIHPSPF	9	Unmodified	_IQLIHPSPF_					0	0	0			REV__nc|ENSG00000179456|Q99592|ZBTB18	REV__nc|ENSG00000179456|Q99592|ZBTB18	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.26708984375	2	526.300384	1050.58622	-1.2094	-0.00063652	-2.945	-0.00155	-4.1544	-0.0021865	526.2986790841389	90.416	1.4238	88.336	87.953	89.376	-2.0805					61	27	4	0	0	0	0.027462	1	5666	5666		16.473	0	1	387900	+		20319	22124	16564	16587	22682	22682					0.06294637202563536
IQLINGIV	8	Unmodified	_IQLINGIV_					0	0	0			REV__ENSG00000138109|ENST00000260682|CYP2C9	REV__ENSG00000138109|ENST00000260682|CYP2C9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	435.7568664550781	2	435.276378	868.538203	0.23963	0.0001043	1.0627	0.00046255	1.3023	0.00056685	435.27656733439136	62.51	1.4111	59.052	58.618	60.029	-3.4577					55	28	3	0	0	0	0.028476	1	4384	4384		35.201	9.7505	1	85414	+		20320	19510	16565	16588	22683	22683					0.09867563282534775
IQLKKLETN	9	Unmodified	_IQLKKLETN_					0	0	0			REV__nc|ENSG00000073614|P29375-2|KDM5A	REV__nc|ENSG00000073614|P29375-2|KDM5A	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.285888671875	2	543.829506	1085.64446	-0.46599	-0.00025342	-0.18186	-9.8899E-05	-0.64785	-0.00035232	543.8292468494078	51.647	0.53395	51.647	51.461	51.995	0					26	12	3	0	0	0	0.027462	1	4027	4027		19.104	0.84144	1	681300	+		20321	16938	16566	16589	22684	22684					0.1050627405720661
IQLKLNKMKR	10	Unmodified	_IQLKLNKMKR_					0	0	0			REV__ENST00000255194.10_2_5:77406104-77409576:-|nuORF	REV__ENST00000255194.10_2_5:77406104-77409576:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	636.398681640625	2	636.40265	1270.79075	-5.7408	-0.0036534	-1.0372	-0.00066006	-6.7779	-0.0043135	636.4018984737235	158.9	0.87512	158.67	158.43	159.3	-0.22696					33	16	3	0	0	0	0.86889	1	16164	16164		10.265	0.5596	1	52250	+		20322	23885	16567	16590	22685	22685					0.1661825302142006
IQLLTKLPK	9	Unmodified	_IQLLTKLPK_					0	0	0			REV__ENSG00000196074|ENST00000357552|SYCP2	REV__ENSG00000196074|ENST00000357552|SYCP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.3555297851562	2	527.35516	1052.69577	2.005	0.0010573	-1.8912	-0.00099732	0.11383	6.0028E-05	527.3539674551008	135.6	1.3745	134.05	133.71	135.08	-1.5437					52	27	3	0	0	0	0.64427	1	13130	13130		26.693	0	1	89870	+		20323	22780	16568	16591	22686	22686					0.17152642821884
IQLLTKLPK	9	Unmodified	_IQLLTKLPK_					0	0	0			REV__ENSG00000196074|ENST00000357552|SYCP2	REV__ENSG00000196074|ENST00000357552|SYCP2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	527.35516	1052.69577	-0.24389	-0.00012862	2.8249	0.0014897	2.581	0.0013611	527.3562581512109	134.3	0.29326	134.07	133.95	134.25	-0.22696	0.0036895	0.0030954	NaN	26.693	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4658.1	+		20324	22780	16568	16591							0.17152642821884
IQLLTKLPK	9	Unmodified	_IQLLTKLPK_					0	0	0			REV__ENSG00000196074|ENST00000357552|SYCP2	REV__ENSG00000196074|ENST00000357552|SYCP2	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	527.35516	1052.69577	-1.3167	-0.00069437	1.4574	0.00076855	0.14067	7.4184E-05	527.3557825152012	135.19	1.3288	134.08	133.72	135.05	-1.1076	0.012023	0.0016531	NaN	26.693	53	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53368	+		20325	22780	16568	16591							0.17152642821884
IQLPEVIRE	9	Unmodified	_IQLPEVIRE_					0	0	0			REV__tr|A0A7D6W3W5|A0A7D6W3W5_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11525PE=4SV=1	REV__tr|A0A7D6W3W5|A0A7D6W3W5_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11525PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.7770385742188	2	548.821681	1095.62881	-0.68163	-0.00037409	-2.2639	-0.0012425	-2.9456	-0.0016166	548.8219625176604	29.131	0.14904	29.131	29.037	29.186	0					4	2	2	0	0	0	0.027462	1	1007	1007		26.693	20.772	1	12642	+		20326	31925	16569	16592	22687	22687					0.08481987540153568
IQLPHLKTL	9	Unmodified	_IQLPHLKTL_					0	0	0		ENSG00000174123|ENST00000308973|TLR10	ENSG00000174123|ENST00000308973|TLR10	ENSG00000174123|ENST00000308973|TLR10	MULTI-SECPEP	OvCa9_classI_Rep2	2	531.3025512695312	2	531.837134	1061.65972	-1.7312	-0.00092072	0.9785	0.0005204	-0.7527	-0.00040031	531.8374705337184	121.27	0.44463	121.07	120.9	121.35	-0.19718					12	8	2	0	0	0	0.027461	1	11711	11711		49.442	21.559	1	12174			20327	7437	16570	16593	22688	22688					0.13135185645046477
IQLPTFHI	8	Unmodified	_IQLPTFHI_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.242919921875	2	484.781828	967.549102	-0.12044	-5.8385E-05	-3.855	-0.0018688	-3.9754	-0.0019272	484.7798454140539	58.581	0.33263	58.581	58.363	58.696	0					14	7	2	0	0	0	0.028476	1	4982	4982		26.796	13.837	1	859270			20328	4829	16571	16594	22689	22689					0.06402965656786819
IQLREHVV	8	Unmodified	_IQLREHVV_					0	0	0			REV__nc|ENSG00000122417|Q9ULJ1-5|ODF2L	REV__nc|ENSG00000122417|Q9ULJ1-5|ODF2L	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.28271484375	2	497.295633	992.576714	-0.13985	-6.9547E-05	0.48531	0.00024134	0.34545	0.00017179	497.29511891691976	30.841	0.39536	30.841	30.632	31.027	0					12	7	3	0	0	0	0.028476	1	1218	1218		68.485	0	1	34872	+		20329	18594	16572	16595	22690	22690					0.0801286891704649
IQLRSVWH	8	Unmodified	_IQLRSVWH_					0	0	0			REV__ENSG00000144909|ENST00000296220|OSBPL11	REV__ENSG00000144909|ENST00000296220|OSBPL11	MULTI-MSMS	OvCa9_classI_Rep2	2	519.7933959960938	2	519.795801	1037.57705	-0.83173	-0.00043233	-2.9616	-0.0015394	-3.7934	-0.0019718	519.7941003158112	120.39	3.5079	120.22	119.69	123.2	-0.17137					148	70	4	0	0	0	0.60331	1	11620	11620		63.306	6.5852	1	553870	+		20330	19944	16573	16596	22691	22691					0.05976288636884419
IQLYTDKL	8	Unmodified	_IQLYTDKL_					0	0	0			REV__ENST00000493283.5_1_5:71616260-71618028:+|nuORF	REV__ENST00000493283.5_1_5:71616260-71618028:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	497.28271484375	2	497.2844	992.554247	-0.17558	-8.7312E-05	-3.0294	-0.0015065	-3.205	-0.0015938	497.2828410656295	30.707	1.4217	30.707	30.236	31.658	0					57	28	5	0	0	0	0.50747	1	1218	1218		76.774	2.5191	1	3574500	+		20331	26702	16574	16597	22692	22692					0.05767224728754172
IQMMLGFP	8	Unmodified	_IQMMLGFP_					0	0	0		ENSG00000196517|ENST00000372310|SLC6A9;nc|ENSG00000196517|P48067-3|SLC6A9;nc|ENSG00000196517|P48067|SLC6A9	ENSG00000196517|ENST00000372310|SLC6A9	ENSG00000196517|ENST00000372310|SLC6A9	MULTI-SECPEP	OvCa99_classI_Rep5	1	468.753662109375	2	468.737717	935.460881	0.22113	0.00010365	-1.4722	-0.0006901	-1.2511	-0.00058644	468.7362443462374	45.137	0.44588	45.137	44.886	45.332	0					15	9	2	0	0	0	0.028476	1	3085	3085		21.702	4.3374	1	105400			20332	8619	16575	16598	22693	22693					-0.009431142496623579
IQMSQNQP	8	Unmodified	_IQMSQNQP_					0	0	0		ENSG00000232040|ENST00000452236|SCAND3;ZBED9|p.W500S|1|0.19|ENSG00000232040|chr6:28575206-28575206|C/G|missense_variant	ENSG00000232040|ENST00000452236|SCAND3	ENSG00000232040|ENST00000452236|SCAND3	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.29119873046875	2	473.226559	944.438566	2.5011	0.0011836	-0.37663	-0.00017823	2.1244	0.0010053	473.2263211215794	76.066	0.41043	76.066	75.913	76.324	0					16	9	2	0	0	0	0.028476	1	7628	7628		24.203	0	1	427950			20333	9290	16576	16599	22694	22694					-0.0358762239374073
IQMTDQNPK	9	Unmodified	_IQMTDQNPK_					0	0	0			REV__ENST00000493008.1_1_10:32096588-32098081:-|nuORF	REV__ENST00000493008.1_1_10:32096588-32098081:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	537.807373046875	2	537.766049	1073.51754	0.62725	0.00033732	-4.2162	-0.0022673	-3.5889	-0.00193	537.7634821440876	98.006	0.80925	96.247	95.865	96.674	-1.7595					38	15	4	0	0	0	0.027433	1	6547	6547		51.335	0.14276	1	62609	+		20334	21078	16577	16600	22695	22695					-0.01627395159448497
IQNIIQQFPT	10	Unmodified	_IQNIIQQFPT_					0	0	0			REV__nc|ENSG00000112742|P33981-2|TTK	REV__nc|ENSG00000112742|P33981-2|TTK	MULTI-SECPEP	OvCa9_classI_Rep4_	4	400.2498779296875	3	401.224034	1200.65027	2.1703	0.00087078	2.4774	0.00099399	4.6477	0.0018648	401.2252327008317	57.355	0.50965	54.01	53.679	54.189	-3.3449					12	9	2	0	0	0	0.027056	1	3692	3692		10.104	0.8921	1	19824	+		20335	16083	16578	16601	22696	22696					0.057973725688498234
IQNKPEKKP	9	Unmodified	_IQNKPEKKP_					0	0	0		nc|ENSG00000073711|Q06190-2|PPP2R3A;ENSG00000073711|ENST00000264977|PPP2R3A	nc|ENSG00000073711|Q06190-2|PPP2R3A	nc|ENSG00000073711|Q06190-2|PPP2R3A	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2806396484375	2	541.321848	1080.62914	2.1749	0.0011773	3.5889	0.0019427	5.7638	0.0031201	541.3237504730907	77.204	0.50021	77.204	76.922	77.422	0					21	11	2	0	0	0	0.027353	1	7746	7746		62.107	1.1355	1	575040			20336	1497	16579	16602	22697	22697					0.09205407259969434
IQNQLWKL	8	Unmodified	_IQNQLWKL_					0	0	0		ENST00000454741.5_1_22:28396099-28396309:+|nuORF	ENST00000454741.5_1_22:28396099-28396309:+|nuORF	ENST00000454741.5_1_22:28396099-28396309:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	521.8038330078125	2	521.805834	1041.59712	-1.0341	-0.00053959	-3.5486	-0.0018517	-4.5827	-0.0023913	521.8039616297732	38.131	0.67932	38.131	37.806	38.486	0					32	14	4	0	0	0	0.57878	1	2141	2141		68.485	4.2774	1	982300			20337	12090	16580	16603	22698	22698					0.07798039576823612
IQNRGCFDLR	10	Unmodified	_IQNRGCFDLR_					0	0	0			REV__ENSG00000197591|ENST00000355784|OR11L1	REV__ENSG00000197591|ENST00000355784|OR11L1	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.31201171875	2	611.311489	1220.60842	0.079051	4.8325E-05	-1.2536	-0.00076636	-1.1746	-0.00071804	611.3105663206994	76.561	2.3982	73.622	73.175	75.573	-2.9389					110	49	4	0	0	0	0.32926	1	6087	6087		77.318	7.69	1	879990	+		20338	22936	16581	16604	22699	22699					0.006944936086483722
IQNRGCFDLR	10	Unmodified	_IQNRGCFDLR_					0	0	0			REV__ENSG00000197591|ENST00000355784|OR11L1	REV__ENSG00000197591|ENST00000355784|OR11L1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	611.311489	1220.60842	-1.0769	-0.00065829	-0.11882	-7.2636E-05	-1.1957	-0.00073093	611.3112036352268	75.595	2.9136	73.741	73.116	76.03	-1.854	0.0040109	0.0011229	NaN	77.318	134	55	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	523500	+		20339	22936	16581	16604							0.006944936086483722
IQNRGCFDLR	10	Unmodified	_IQNRGCFDLR_					0	0	0			REV__ENSG00000197591|ENST00000355784|OR11L1	REV__ENSG00000197591|ENST00000355784|OR11L1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	611.311489	1220.60842	0.72892	0.0004456	-1.8938	-0.0011577	-1.1649	-0.00071213	611.3102026352772	76.219	2.5211	73.848	72.909	75.43	-2.3715	0.11089	-0.0010473	NaN	77.318	121	48	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	326480	+		20340	22936	16581	16604							0.006944936086483722
IQNTVKVFLST	11	Unmodified	_IQNTVKVFLST_					0	0	0			REV__DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant	REV__DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	624.7774658203125	2	625.36117	1248.70779	1.2392	0.00077493	-3.8062	-0.0023802	-2.567	-0.0016053	625.358919227859	67.507	0.54424	64.017	63.789	64.333	-3.4902					15	10	3	0	0	0	0.025864	1	4991	4991		32.751	17.417	1	30915	+		20341	16314	16582	16605	22700	22700					0.09338214774425069
IQNTVKVFLST	11	Unmodified	_IQNTVKVFLST_					0	0	0			REV__DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant	REV__DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	625.36117	1248.70779	-0.43102	-0.00026954	-1.1037	-0.00069019	-1.5347	-0.00095974	625.3604123094206	66.753	0.29866	64.057	63.816	64.114	-2.6958	0.020008	0.0024852	NaN	40.058	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10392	+		20342	16314	16582	16605							0.09338214774425069
IQPAALGGCNE	11	Unmodified	_IQPAALGGCNE_					0	0	0			REV__tr|A0A7D6W3C5|A0A7D6W3C5_9CLOTPeptidedeformylaseOS=ClostridiumintestinaleOX=36845GN=defPE=3SV=1	REV__tr|A0A7D6W3C5|A0A7D6W3C5_9CLOTPeptidedeformylaseOS=ClostridiumintestinaleOX=36845GN=defPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.8137817382812	2	536.758223	1071.50189	0.23312	0.00012513	3.1952	0.0017151	3.4284	0.0018402	537.2622397346631	96.843	0.2954	94.417	94.22	94.516	-2.4256					8	5	2	0	0	0	0.025457	1	8566	8566		22.58	0	1	17330	+		20343	31912	16583	16606	22701	22701					-0.030996816764854884
IQPASQKSSL	10	Unmodified	_IQPASQKSSL_					0	0	0		sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1;sp|P16784|ITP_HCMVAInnertegumentproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL47PE=1SV=2	sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1	sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7485961914062	2	529.795663	1057.57677	-0.057361	-3.039E-05	1.4396	0.00076271	1.3823	0.00073232	529.7952628156877	60.864	0.33884	60.864	60.646	60.984	0					13	7	2	0	0	0	0.027476	1	5338	5338		90.37	2.6734	1	296420			20344	32898	16584	16607	22702	22702					0.05028824126384279
IQPGGKTVSSK	11	Unmodified	_IQPGGKTVSSK_					0	0	0			REV__ENST00000518683.5_1_8:87410815-87460532:+|nuORF	REV__ENST00000518683.5_1_8:87410815-87460532:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.26123046875	2	551.316763	1100.61897	-0.52848	-0.00029136	-0.022699	-1.2514E-05	-0.55118	-0.00030388	551.3166793216573	63.701	0.59554	63.701	63.455	64.051	0					24	14	2	0	0	0	0.025861	1	5716	5716		23.523	3.5259	1	674670	+		20345	18625	16585	16608	22703	22703					0.07268799534745085
IQPGWHSPE	9	Unmodified	_IQPGWHSPE_					0	0	0			REV__ENST00000249861.8_1_15:71184746-71185064:-|nuORF	REV__ENST00000249861.8_1_15:71184746-71185064:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.7567138671875	2	525.753798	1049.49304	-0.61346	-0.00032253	3.3849	0.0017796	2.7714	0.0014571	525.7554248226903	48.068	1.234	44.96	44.684	45.918	-3.1077					53	23	3	0	0	0	0.38529	1	2645	2645		53.351	17.733	1	378450	+		20346	23856	16586	16609	22704	22704					-0.029722872506681597
IQPLFTHL	8	Unmodified	_IQPLFTHL_					0	0	0			REV__ENST00000555759.1_1_14:95904955-95916441:-|nuORF	REV__ENST00000555759.1_1_14:95904955-95916441:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	484.7809143066406	2	484.781828	967.549102	-0.12044	-5.8385E-05	-3.855	-0.0018688	-3.9754	-0.0019272	484.7798454140539	58.581	0.33263	58.581	58.363	58.696	0					14	7	2	0	0	0	0.61758	1	4993	4993		60.294	12.378	1	859270	+		20347	21951	16587	16610	22705	22705					0.06402965656809556
IQPLIKQWVD	10	Unmodified	_IQPLIKQWVD_					0	0	0		ENSG00000064313|ENST00000378164|TAF2;TAF2|p.T931Lfs*29|1|0.07|ENSG00000064313|chr8:119756093-119756094|-/ATTTGGAAAAACAGAAATACAAATAG|frameshift_variant	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	413.8957824707031	3	413.908046	1238.70231	0.15363	6.3588E-05	4.1985	0.0017378	4.3522	0.0018014	413.91137641648703	47.058	0.41068	43.986	43.81	44.221	-3.0724					10	7	2	0	0	0	0.026849	1	2529	2529		30.569	11.306	1	6091.2			20348	1298	16588	16611	22706	22706					0.09250535982596375
IQPLIQLAR	9	Unmodified	_IQPLIQLAR_					0	0	0			REV__ENSG00000157625|ENST00000288422|TAB3	REV__ENSG00000157625|ENST00000288422|TAB3	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.3329467773438	2	526.334759	1050.65496	-2.291	-0.0012058	-1.8819	-0.0009905	-4.1729	-0.0021963	526.3335579094949	147.21	1.1944	145.78	145.58	146.78	-1.4351					55	23	3	0	0	0	0.62352	1	14501	14501		29.15	1.2673	1	87130	+		20349	20526	16589	16612	22707	22707					0.13166301502269562
IQPVFTSPPQ	10	Unmodified	_IQPVFTSPPQ_					0	0	0			REV__ENSG00000120733|ENST00000314358|KDM3B	REV__ENSG00000120733|ENST00000314358|KDM3B	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.8033447265625	2	557.300581	1112.58661	1.3824	0.0007704	1.4404	0.00080276	2.8228	0.0015732	557.3008189188661	131.53	0.7007	131.53	131.15	131.85	0					26	14	3	0	0	0	0.02658	1	15307	15307		37.812	0	1	155730	+		20350	16251	16590	16613	22708	22708					0.03482012131757983
IQPWHGGL	8	Unmodified	_IQPWHGGL_					0	0	0		ENSG00000175110|ENST00000680020|MRPS22;nc|ENSG00000175110|P82650-2|MRPS22	ENSG00000175110|ENST00000680020|MRPS22	ENSG00000175110|ENST00000680020|MRPS22	MULTI-SECPEP	OvCa9_classI_Rep4_	4	454.3031005859375	2	454.24287	906.471186	0.97723	0.0004439	1.8487	0.00083978	2.826	0.0012837	454.2437819660691	97.998	0.505	95.619	95.317	95.822	-2.3786					12	9	2	0	0	0	0.028476	1	8718	8718		26.796	17.974	1	11670			20351	7517	16591	16614	22709	22709					0.014209527914317732
IQPYADAGLLR	11	Unmodified	_IQPYADAGLLR_					0	0	0		tr|A0A553SI67|A0A553SI67_NIACIN-acetyltransferasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14305PE=4SV=1	tr|A0A553SI67|A0A553SI67_NIACIN-acetyltransferasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14305PE=4SV=1	tr|A0A553SI67|A0A553SI67_NIACIN-acetyltransferasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14305PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	608.8364868164062	2	608.837862	1215.66117	-3.2591	-0.0019843	1.617	0.00098452	-1.642	-0.00099973	608.8386735835178	151.65	1.4083	150.69	150.4	151.81	-0.95647					78	27	4	0	0	0	0.72064	1	12938	12938		22.58	0.61977	1	213430			20352	33350	16592	16615	22710	22710					0.06196774943123273
IQQAELPDADK	11	Unmodified	_IQQAELPDADK_					0	0	0		ENST00000508173.5_1_5:149240460-149276122:-|nuORF	ENST00000508173.5_1_5:149240460-149276122:-|nuORF	ENST00000508173.5_1_5:149240460-149276122:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	409.88006591796875	3	409.878704	1226.61428	-0.17802	-7.2968E-05	4.4731	0.0018334	4.2951	0.0017605	409.88034409875627	52.182	1.4338	49.369	48.996	50.43	-2.8129					84	28	4	0	0	0	0.70761	1	3487	3487		30.139	4.0758	1	479560			20353	12940	16593	16616	22711	22711					0.010038706013119736
IQQARDRLVAL	11	Unmodified	_IQQARDRLVAL_					0	0	0			REV__ENST00000488506.5_1_9:130570554-130575491:+|nuORF	REV__ENST00000488506.5_1_9:130570554-130575491:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8822631835938	2	641.883136	1281.75172	-3.6311	-0.0023307	2.7968	0.0017952	-0.8343	-0.00053552	641.8847801872174	153.39	4.0845	151.94	150.68	154.77	-1.4516					420	106	6	0	0	0	0.68399	2	15304	15136;15304		35.152	3.6222	1	809780	+		20354	19417	16594	16617	22712;22713	22713					0.12211243991396259
IQQARRVRL	9	Unmodified	_IQQARRVRL_					0	0	0			REV__ENSG00000084090|ENST00000337288|STARD7	REV__ENSG00000084090|ENST00000337288|STARD7	MULTI-MSMS	OvCa99_classI_Rep5	1	570.3635864257812	2	570.359631	1138.70471	0.88279	0.00050351	-0.50308	-0.00028693	0.37971	0.00021657	570.3592234734417	157.3	1.2803	157.3	156.95	158.23	0					75	25	5	0	0	0	0.59983	1	18452	18452		31.955	1.4512	1	587780	+		20355	17117	16595	16618	22714	22714					0.14090429230918744
IQQEMDLLR	9	Oxidation (M)	_IQQEM(Oxidation (M))DLLR_		IQQEM(1)DLLR		IQQEM(72)DLLR	0	0	1		nc|ENSG00000146143|P49643-2|PRIM2;ENST00000419977.4_1_6:57182469-57246993:+|nuORF;ENSG00000146143|ENST00000615550|PRIM2	nc|ENSG00000146143|P49643-2|PRIM2	nc|ENSG00000146143|P49643-2|PRIM2	MULTI-MSMS	OvCa99_classI_Rep5	1	581.302490234375	2	581.300255	1160.58596	-1.0206	-0.00059327	3.948	0.0022949	2.9274	0.0017017	581.302882190631	43.414	1.0665	43.414	43.014	44.08	0					81	24	6	0	0	0	0.22621	1	2848	2848		71.877	7.6702	1	10876000			20356	5268	16596	16619	22715	22715		171			0.01208849420390834
IQQGINAVN	9	Unmodified	_IQQGINAVN_					0	0	0		nc|ENSG00000130377|Q5FVE4-4|ACSBG2;nc|ENSG00000130377|Q5FVE4-3|ACSBG2;ENST00000591741.5_1_19:6161567-6190665:+|nuORF;nc|ENSG00000130377|Q5FVE4-2|ACSBG2;ENSG00000130377|ENST00000588485|ACSBG2	nc|ENSG00000130377|Q5FVE4-4|ACSBG2	nc|ENSG00000130377|Q5FVE4-4|ACSBG2	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.7767639160156	2	478.761623	955.508694	-0.16663	-7.9776E-05	0.6898	0.00033025	0.52317	0.00025048	478.76143504573065	44.728	0.67084	44.728	44.618	45.289	0					20	14	2	0	0	0	0.027462	1	3083	3083		23.042	0	1	351100			20357	3984	16597	16620	22716	22716					0.029159992663721823
IQQGKTEKME	10	Unmodified	_IQQGKTEKME_					0	0	0			REV__nc|ENSG00000139973|Q17RD7-3|SYT16	REV__nc|ENSG00000139973|Q17RD7-3|SYT16	MULTI-MSMS	OvCa99_classI_Rep5	1	596.306884765625	2	596.305538	1190.59652	-0.17714	-0.00010563	-0.016386	-9.7709E-06	-0.19352	-0.0001154	596.3054687087324	46.961	7.1463	46.961	46.587	53.733	0					374	164	4	0	0	0	0.28422	4	3865	3340;3647;3865;4112		82.75	13.123	1	16604000	+		20358	19647	16598	16621	22717;22718;22719;22720	22719					0.00884832074825681
IQQGKTEKME	10	Unmodified	_IQQGKTEKME_					0	0	0			REV__nc|ENSG00000139973|Q17RD7-3|SYT16	REV__nc|ENSG00000139973|Q17RD7-3|SYT16	MULTI-MSMS	OvCa9_classI_Rep4_	4	596.3062744140625	2	596.305538	1190.59652	0.12404	7.3968E-05	0.41042	0.00024473	0.53446	0.0003187	596.3052757852319	52.184	3.2932	48.976	48.288	51.581	-3.208					175	64	5	0	0	0	0.32926	2	3104	3079;3104		77.318	5.4482	1	2307000	+		20359	19647	16598	16621	22721;22722	22722					0.00884832074825681
IQQKVLGLLN	10	Unmodified	_IQQKVLGLLN_					0	0	0		ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	MULTI-MSMS	OvCa9_classI_Rep3	3	563.3541259765625	2	563.353148	1124.69174	-1.0854	-0.00061147	0.27756	0.00015637	-0.80785	-0.00045511	563.3535121729102	117.2	1.8826	116.17	115.84	117.73	-1.0324					63	37	2	0	0	0	0.49558	1	8844	8844		54.776	3.5836	1	2467900			20360	6173	16599	16622	22723	22723					0.1343855332820567
IQQRAHQI	8	Unmodified	_IQQRAHQI_					0	0	0		ENST00000563451.1_1_15:42804044-42804128:+|nuORF;ENST00000568745.5_1_15:42804044-42805206:+|nuORF;SNAP23|p.S116Lfs*7|1|0.13|ENSG00000092531|chr15:42528340-42528340|A/-|frameshift_variant;nc|ENSG00000092531|O00161-2|SNAP23;ENSG00000092531|ENST00000249647|SNAP23	ENST00000563451.1_1_15:42804044-42804128:+|nuORF	ENST00000563451.1_1_15:42804044-42804128:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	497.2828369140625	2	497.283057	992.551562	-0.17558	-8.7312E-05	-0.32942	-0.00016382	-0.505	-0.00025113	497.2828410656295	30.707	1.4217	30.707	30.236	31.658	0					57	28	5	0	0	0	0.2826	1	1192	1192		110.34	14.147	1	3574500			20361	1898	16600	16623	22724	22724					0.05498814114469042
IQQTCPHLF	9	Unmodified	_IQQTCPHLF_					0	0	0			REV__ENSG00000177992|ENST00000325643|SPATA31E1	REV__ENSG00000177992|ENST00000325643|SPATA31E1	MULTI-SECPEP	OvCa9_classI_Rep2	2	544.347412109375	2	543.773677	1085.5328	0.68259	0.00037118	4.4543	0.0024221	5.1369	0.0027933	544.2777199343988	129.32	0.14848	129.09	128.97	129.12	-0.22696					4	2	2	0	0	0	0.027462	1	12684	12684		31.955	3.7006	1	8263.7	+		20362	22037	16601	16624	22725	22725					-0.006544835716113084
IQQVRREGLAL	11	Unmodified	_IQQVRREGLAL_					0	0	0			REV__ENST00000542613.5_1_9:95086312-95087609:-|nuORF	REV__ENST00000542613.5_1_9:95086312-95087609:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8826293945312	2	641.883136	1281.75172	-3.6311	-0.0023307	2.7968	0.0017952	-0.8343	-0.00053552	641.8847801872174	153.39	4.0845	151.94	150.68	154.77	-1.4516					420	106	6	0	0	0	0.69081	1	15202	15202		32.812	1.2826	1	809780	+		20363	27385	16602	16625	22726	22726					0.12211243991418996
IQRCTSGY	8	Unmodified	_IQRCTSGY_					0	0	0			REV__ENST00000412878.2_1_10:53079965-53080385:+|nuORF	REV__ENST00000412878.2_1_10:53079965-53080385:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	464.2802734375	2	464.221277	926.428001	-1.1922	-0.00055343	2.3219	0.0010779	1.1297	0.00052444	464.22224826189193	86.533	1.4171	84.356	84.03	85.447	-2.1768					76	27	5	0	0	0	0.028476	1	5233	5233		19.36	1.995	1	561130	+		20364	25501	16603	16626	22727	22727					-0.038156050481802595
IQREPPSD	8	Unmodified	_IQREPPSD_					0	0	0			REV__nc|ENSG00000145725|O43314-2|PPIP5K2	REV__nc|ENSG00000145725|O43314-2|PPIP5K2	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.2562255859375	2	471.237981	940.461409	0.46236	0.00021788	2.9423	0.0013865	3.4046	0.0016044	471.23924445174157	46.002	1.0939	46.002	45.582	46.676	0					31	24	3	0	0	0	0.028476	1	3256	3256		40.573	21.213	1	1141200	+		20365	19979	16604	16627	22728	22728					-0.01120280004624874
IQRFQLPALQ	10	Unmodified	_IQRFQLPALQ_					0	0	0		nc|ENSG00000172890|Q6IA69-2|NADSYN1;ENSG00000172890|ENST00000319023|NADSYN1;ENST00000531236.1_1_11:71196518-71209628:+|nuORF	nc|ENSG00000172890|Q6IA69-2|NADSYN1	nc|ENSG00000172890|Q6IA69-2|NADSYN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	405.2392578125	3	405.239907	1212.69789	0.69282	0.00028076	-4.3164	-0.0017492	-3.6236	-0.0014684	405.23816410818705	45.869	1.9179	42.797	42.405	44.323	-3.0717					124	36	5	0	0	0	0.38315	1	2378	2378		70.816	9.0517	1	2187400			20366	7326	16605	16628	22729	22729					0.10005071559703538
IQRICKYPL	9	Unmodified	_IQRICKYPL_					0	0	0		nc|ENSG00000046889|Q70Z35-3|PREX2;ENST00000529398.5_1_8:68864629-69017594:+|nuORF;nc|ENSG00000046889|Q70Z35-4|PREX2;ENSG00000046889|ENST00000288368|PREX2;ENST00000517617.1_1_8:68864752-69023167:+|nuORF;nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1;PREX1|p.C968Wfs*56|1|0.22|ENSG00000124126|chr20:48650120-48650121|-/ACCAAGGGTCCCACTGGCTGGCCCGAAGCTGC|frameshift_variant;PREX1|p.T970Vfs*46|1|0.08|ENSG00000124126|chr20:48650116-48650117|-/CATGGTGGTGATGCAGTGCTGGGTGTAC|frameshift_variant;PREX2|p.I443Tfs*36|1|0.1|ENSG00000046889|chr8:68060768-68060768|T/-|frameshift_variant	nc|ENSG00000046889|Q70Z35-3|PREX2;nc|ENSG00000124126|Q8TCU6-3|PREX1;PREX1|p.T970Vfs*46|1|0.08|ENSG00000124126|chr20:48650116-48650117|-/CATGGTGGTGATGCAGTGCTGGGTGTAC|frameshift_variant;PREX2|p.I443Tfs*36|1|0.1|ENSG00000046889|chr8:68060768-68060768|T/-|frameshift_variant	nc|ENSG00000124126|Q8TCU6-3|PREX1	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.8134765625	2	567.328619	1132.64269	2.9018	0.0016463	-4.4639	-0.0025325	-1.562	-0.00088619	567.3261323920685	96.397	0.49989	96.397	96.126	96.625	0					23	11	3	0	0	0	0.027462	1	10518	10518		45.952	25.955	1	327870			20367	14997;15520;1137;15521	16606	16629	22730	22730					0.08166941767558455
IQRIEKEKWHR	11	Unmodified	_IQRIEKEKWHR_					0	0	0		nc|ENSG00000118307|Q6TDU7-2|DNAI7;nc|ENSG00000118307|Q6TDU7-3|DNAI7;nc|ENSG00000118307|Q6TDU7|DNAI7;ENSG00000118307|ENST00000395987|DNAI7;ENST00000557684.5_1_12:25267803-25348012:-|nuORF	nc|ENSG00000118307|Q6TDU7-2|DNAI7	nc|ENSG00000118307|Q6TDU7-2|DNAI7	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.32574462890625	3	508.291553	1521.85283	0.14199	7.2171E-05	-0.035769	-1.8181E-05	0.10622	5.399E-05	508.2916734852691	70.388	1.2611	67.669	67.105	68.366	-2.7196					48	24	3	0	0	0	0.026033	1	3225	3225		12.433	0	1	29267			20368	3300	16607	16630	22731	22731					0.11277695694093381
IQRIVQEAL	9	Unmodified	_IQRIVQEAL_					0	0	0		ENST00000518114.1_1_2:190619886-190627438:-|nuORF;nc|ENSG00000128694|Q9H4B0-3|OSGEPL1;ENST00000524043.1_1_2:190618786-190626366:-|nuORF;nc|ENSG00000128694|Q9H4B0-2|OSGEPL1;ENSG00000128694|ENST00000264151|OSGEPL1	ENST00000518114.1_1_2:190619886-190627438:-|nuORF	ENST00000518114.1_1_2:190619886-190627438:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.7789916992188	2	535.321848	1068.62914	0.54936	0.00029408	3.5167	0.0018825	4.066	0.0021766	535.3244336756217	72.106	0.12067	72.106	72.045	72.165	0					4	2	2	0	0	0	0.027462	1	7006	7006		18.262	0	1	209420			20369	3900	16608	16631	22732	22732					0.09757407259962747
IQRKKFPPDN	10	Unmodified	_IQRKKFPPDN_					0	0	0		ENSG00000165140|ENST00000375326|FBP1	ENSG00000165140|ENST00000375326|FBP1	ENSG00000165140|ENST00000375326|FBP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	622.83447265625	2	621.851304	1241.68806	-0.69785	-0.00043396	-2.6583	-0.0016531	-3.3562	-0.0020871	621.8494300388403	55.926	0.41224	55.926	55.682	56.094	0					19	9	3	0	0	0	0.026658	1	4578	4578		42.864	13.694	1	335600			20370	6527	16609	16632	22733	22733					0.07687883554331165
IQRLREVL	8	Unmodified	_IQRLREVL_					0	0	0		ENST00000567550.1_1_16:15528510-15675189:+|nuORF;nc|ENSG00000166780|Q96MC5-2|BMERB1;ENSG00000166780|ENST00000300006|BMERB1	ENST00000567550.1_1_16:15528510-15675189:+|nuORF	ENST00000567550.1_1_16:15528510-15675189:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.8281860351562	2	513.824558	1025.63456	0.64137	0.00032955	-0.47795	-0.00024558	0.16342	8.3967E-05	513.8244834183118	68.041	1.9125	64.55	64.087	66	-3.4902					122	38	5	0	0	0	0.66704	1	5074	5074		50.025	0	1	2120800			20371	6709	16610	16633	22734	22734					0.12277130842448969
IQRNGGDGER	10	Unmodified	_IQRNGGDGER_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	OvCa99_classI_Rep5	1	551.2730712890625	2	551.273418	1100.53228	-0.46106	-0.00025417	-3.726	-0.0020541	-4.1871	-0.0023082	551.2714059559593	50.97	1.7528	50.97	50.594	52.347	0					106	40	5	0	0	0	0.38315	1	3887	3887		70.816	8.7088	1	27099000			20372	3653	16611	16634	22735	22735					-0.01396186967099311
IQRQRHRAL	9	Unmodified	_IQRQRHRAL_					0	0	0		ENST00000560419.1_1_14:75893736-75893781:-|nuORF	ENST00000560419.1_1_14:75893736-75893781:-|nuORF	ENST00000560419.1_1_14:75893736-75893781:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	589.3562622070312	2	589.35488	1176.69521	-0.90314	-0.00053227	1.9861	0.0011705	1.083	0.00063827	589.3557441646196	28.115	0.54811	28.115	27.891	28.439	0					17	10	3	0	0	0	0.62352	1	894	894		29.15	3.5755	1	83513			20373	13736	16612	16635	22736	22736					0.11392660945398347
IQRRQASI	8	Unmodified	_IQRRQASI_					0	0	0			REV__DHX38|p.Q360K|1|0.2|ENSG00000140829|chr16:72099849-72099849|C/A|missense_variant	REV__DHX38|p.Q360K|1|0.2|ENSG00000140829|chr16:72099849-72099849|C/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	486.292236328125	2	486.290882	970.567212	0.44909	0.00021839	2.0311	0.00098773	2.4802	0.0012061	486.29178638170987	132.77	2.1161	132.55	132.23	134.34	-0.22696					105	42	3	0	0	0	0.61758	1	13157	13157		60.294	1.512	1	834840	+		20374	16298	16613	16636	22737	22737					0.08075100631504029
IQRTPKIQVY	10	Unmodified	_IQRTPKIQVY_					0	0	0		ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	MULTI-MSMS	OvCa99_classI_Rep5	1	623.370849609375	2	623.36933	1244.72411	-1.4807	-0.00092301	1.0517	0.00065557	-0.42902	-0.00026744	623.369839225398	63.919	0.68481	63.919	63.69	64.375	0					43	16	4	0	0	0	0.22809	1	5780	5780		88.177	29.395	1	3302100			20375	6703	16614	16637	22738	22738					0.11153340731175376
IQRTPKIQVY	10	Unmodified	_IQRTPKIQVY_					0	0	0		ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	MULTI-MATCH	OvCa9_classI_Rep2	2		2	623.36933	1244.72411	0.065846	4.1046E-05	-0.099495	-6.2022E-05	-0.033649	-2.0976E-05	623.3691686754535	66.306	0.74529	63.61	63.269	64.014	-2.6958	-0.11397	-0.00056019	NaN	88.177	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25033			20376	6703	16614	16637							0.11153340731175376
IQRTPKIQVY	10	Unmodified	_IQRTPKIQVY_					0	0	0		ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	623.36933	1244.72411	0.54857	0.00034196	-0.63449	-0.00039552	-0.085916	-5.3557E-05	623.3689809103591	67.134	0.44581	63.644	63.442	63.888	-3.4902	-0.080829	-0.0012272	NaN	88.177	16	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38879			20377	6703	16614	16637							0.11153340731175376
IQRWDLAVL	9	Unmodified	_IQRWDLAVL_					0	0	0		nc|ENSG00000125257|O15439-4|ABCC4;nc|ENSG00000125257|O15439-3|ABCC4	nc|ENSG00000125257|O15439-4|ABCC4	nc|ENSG00000125257|O15439-4|ABCC4	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.3312377929688	2	557.324391	1112.63423	1.1522	0.00064217	4.3729	0.0024371	5.5251	0.0030793	557.328393946559	109.81	1.5797	108.21	107.8	109.38	-1.6011					74	29	3	0	0	0	0.42676	1	10078	10078		49.442	8.6634	1	372990			20378	15001	16615	16638	22739	22739					0.08241711122605011
IQRWFRQRRNQ	11	Unmodified	_IQRWFRQRRNQ_					0	0	0		ENSG00000172292|ENST00000305747|CERS6;nc|ENSG00000172292|Q6ZMG9-2|CERS6	ENSG00000172292|ENST00000305747|CERS6	ENSG00000172292|ENST00000305747|CERS6	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2625122070312	3	529.96243	1586.86546	2.2726	0.0012044	2.9844	0.0015816	5.257	0.002786	530.2973927891413	91.538	0.6206	91.538	91.174	91.794	0					39	14	4	0	0	0	0.026383	1	9889	9889		12.957	7.2587	1	457090			20379	7288	16616	16639	22740	22740					0.09550151877010649
IQSNPQFLII	10	Unmodified	_IQSNPQFLII_					0	0	0		tr|A0A7D6VNV5|A0A7D6VNV5_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19690PE=4SV=1	tr|A0A7D6VNV5|A0A7D6VNV5_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19690PE=4SV=1	tr|A0A7D6VNV5|A0A7D6VNV5_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19690PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	586.8340454101562	2	586.837331	1171.66011	-2.7152	-0.0015934	-2.3665	-0.0013887	-5.0817	-0.0029821	586.8358131887276	92.271	1.2753	90.247	89.941	91.216	-2.0241					66	26	3	0	0	0	0.39172	1	5846	5846		69.628	4.1622	1	968670			20380	34731	16617	16640	22741	22741					0.08114560574244933
IQSRQRDL	8	Unmodified	_IQSRQRDL_					0	0	0			REV__ENSG00000114656|ENST00000645291|CFAP92	REV__ENSG00000114656|ENST00000645291|CFAP92	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.2666320800781	2	508.285797	1014.55704	-0.023841	-1.2118E-05	0.59002	0.0002999	0.56618	0.00028778	508.2877333867075	71.034	0.27525	71.034	70.954	71.23	0					9	6	2	0	0	0	0.028476	1	6852	6852		42.396	11.892	1	146570	+		20381	18195	16618	16641	22742	22742					0.050344929062816846
IQSRRKYKWLF	11	Unmodified	_IQSRRKYKWLF_					0	0	0			REV__L1M3_dup291|chr1:173794566-173795729:+|1.281363593639287|0.3648644439828962|1.81|429.0|8|1|sense	REV__L1M3_dup291|chr1:173794566-173795729:+|1.281363593639287|0.3648644439828962|1.81|429.0|8|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.3014831542969	3	508.964777	1523.8725	-0.14289	-7.2725E-05	-3.389	-0.0017249	-3.5318	-0.0017976	508.96271194420314	63.869	3.0077	63.869	62.378	65.385	0					119	74	4	0	0	0	0.026383	1	5840	5840		12.957	6.9564	1	331710	+		20382	28361	16619	16642	22743	22743					0.1315207170487156
IQSSFDHQQL	10	Unmodified	_IQSSFDHQQL_					0	0	0			REV__nc|ENSG00000065717|Q04725-2|TLE2	REV__nc|ENSG00000065717|Q04725-2|TLE2	MULTI-MSMS	OvCa9_classI_Rep4_	4	601.7951049804688	2	601.793652	1201.57275	0.48381	0.00029115	-1.0542	-0.00063438	-0.57035	-0.00034323	601.7929681861602	78.902	1.8703	76.151	75.899	77.769	-2.7514					77	38	3	0	0	0	0.44431	1	6377	6377		62.107	0	1	708700	+		20383	16803	16620	16643	22744	22744					-0.019972653673448804
IQSTLGYVALL	11	Unmodified	_IQSTLGYVALL_					0	0	0		ENSG00000157214|ENST00000394621|STEAP2;nc|ENSG00000157214|Q8NFT2-2|STEAP2	ENSG00000157214|ENST00000394621|STEAP2	ENSG00000157214|ENST00000394621|STEAP2	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3419189453125	2	589.344989	1176.67542	-3.0463	-0.0017953	-0.38122	-0.00022467	-3.4276	-0.00202	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.71498	1	14835	14835		24.519	4.5224	1	272220			20384	5883	16621	16644	22745	22745					0.09415427371436635
IQTAHKQVE	9	Unmodified	_IQTAHKQVE_					0	0	0			REV__nc|ENSG00000132694|O15085|ARHGEF11	REV__nc|ENSG00000132694|O15085|ARHGEF11	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.82861328125	2	527.288005	1052.56146	2.3869	0.0012586	4.1063	0.0021652	6.4932	0.0034238	527.2899588675341	102.74	0.59107	102.74	102.42	103.01	0					21	12	3	0	0	0	0.027462	1	11480	11480		26.693	0	1	1614100	+		20385	19098	16622	16645	22746	22746					0.0372795732916984
IQTAVRLLL	9	Unmodified	_IQTAVRLLL_					0	0	0		ENSG00000276410|ENST00000615966|H2BC3;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000146047|ENST00000274764|H2BC1;HIST1H2BN|p.G105E|1|0.24|ENSG00000233822|chr6:27838975-27838975|G/A|missense_variant;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;nc|ENSG00000203814|Q5QNW6-2|H2BC18	ENSG00000276410|ENST00000615966|H2BC3;ENSG00000278588|ENST00000377733|H2BC10	ENSG00000278588|ENST00000377733|H2BC10	MULTI-MSMS	OvCa99_classI_Rep5	1	513.8379516601562	2	513.837134	1025.65972	1.2318	0.00063296	0.14103	7.2466E-05	1.3729	0.00070543	513.8372122853037	111.58	4.0537	111.58	111.2	115.25	0					218	90	6	0	0	0	0.025955	7	12688	12665;12688;12712;12736;12761;12811;12872		139.97	43.691	1	29115000			20386	3666;5948	16623	16646	22747;22748;22749;22750;22751;22752;22753	22748					0.14791185645049154
IQTAVRLLL	9	Unmodified	_IQTAVRLLL_					0	0	0		ENSG00000276410|ENST00000615966|H2BC3;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000146047|ENST00000274764|H2BC1;HIST1H2BN|p.G105E|1|0.24|ENSG00000233822|chr6:27838975-27838975|G/A|missense_variant;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;nc|ENSG00000203814|Q5QNW6-2|H2BC18	ENSG00000276410|ENST00000615966|H2BC3;ENSG00000278588|ENST00000377733|H2BC10	ENSG00000278588|ENST00000377733|H2BC10	MULTI-MSMS	OvCa9_classI_Rep2	2	513.8368530273438	2	513.837134	1025.65972	0.55607	0.00028573	-0.83889	-0.00043105	-0.28282	-0.00014532	513.8366888143955	111.95	1.0842	111.81	111.47	112.56	-0.13961					55	21	4	0	0	0	0.21231	1	10577	10577		74.255	4.6274	1	179270			20387	3666;5948	16623	16646	22754	22754					0.14791185645049154
IQTAVRLLL	9	Unmodified	_IQTAVRLLL_					0	0	0		ENSG00000276410|ENST00000615966|H2BC3;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000146047|ENST00000274764|H2BC1;HIST1H2BN|p.G105E|1|0.24|ENSG00000233822|chr6:27838975-27838975|G/A|missense_variant;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;nc|ENSG00000203814|Q5QNW6-2|H2BC18	ENSG00000276410|ENST00000615966|H2BC3;ENSG00000278588|ENST00000377733|H2BC10	ENSG00000278588|ENST00000377733|H2BC10	MULTI-MATCH	OvCa9_classI_Rep3	3		2	513.837134	1025.65972	1.6404	0.00084292	-2.0009	-0.0010281	-0.36043	-0.0001852	513.8360647924027	112.95	1.2576	111.88	111.56	112.82	-1.0753	0.099956	-0.0012982	NaN	139.97	66	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179090			20388	3666;5948	16623	16646							0.14791185645049154
IQTAVRLLL	9	Unmodified	_IQTAVRLLL_					0	0	0		ENSG00000276410|ENST00000615966|H2BC3;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000146047|ENST00000274764|H2BC1;HIST1H2BN|p.G105E|1|0.24|ENSG00000233822|chr6:27838975-27838975|G/A|missense_variant;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;nc|ENSG00000203814|Q5QNW6-2|H2BC18	ENSG00000276410|ENST00000615966|H2BC3;ENSG00000278588|ENST00000377733|H2BC10	ENSG00000278588|ENST00000377733|H2BC10	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	513.837134	1025.65972	0.27893	0.00014332	-1.0876	-0.00055883	-0.80863	-0.00041551	513.836566681758	113.29	1.5947	111.85	111.56	113.15	-1.4461	0.067919	-0.00035962	NaN	139.97	74	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224020			20389	3666;5948	16623	16646							0.14791185645049154
IQTCWLQL	8	Unmodified	_IQTCWLQL_					0	0	0		nc|ENSG00000061492|Q9H1J5|WNT8A;ENSG00000061492|ENST00000506684|WNT8A;nc|ENSG00000061492|Q9H1J5-2|WNT8A	nc|ENSG00000061492|Q9H1J5|WNT8A	nc|ENSG00000061492|Q9H1J5|WNT8A	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.2418518066406	2	502.76532	1003.51609	-0.39759	-0.00019989	2.348	0.0011805	1.9504	0.0009806	502.7665460225074	55.991	0.41652	55.991	55.804	56.22	0					27	9	4	0	0	0	0.028476	1	4609	4609		73.975	15.745	1	657310			20390	1270	16624	16647	22755	22755					0.014470155424533004
IQTCWLQL	8	Unmodified	_IQTCWLQL_					0	0	0		nc|ENSG00000061492|Q9H1J5|WNT8A;ENSG00000061492|ENST00000506684|WNT8A;nc|ENSG00000061492|Q9H1J5-2|WNT8A	nc|ENSG00000061492|Q9H1J5|WNT8A	nc|ENSG00000061492|Q9H1J5|WNT8A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	502.76532	1003.51609	-0.96443	-0.00048488	6.8606	0.0034492	5.8961	0.0029644	502.76768107843776	58.823	0.5046	56.043	55.789	56.294	-2.7801	0.025635	0.0040372	NaN	73.975	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13608			20391	1270	16624	16647							0.014470155424533004
IQTFGTVLLTI	11	Unmodified	_IQTFGTVLLTI_					0	0	0		tr|A0A553SP82|A0A553SP82_NIACICarbamoylphosphatesynthaselargechainOS=NialliacirculansOX=1397GN=carBPE=3SV=1	tr|A0A553SP82|A0A553SP82_NIACICarbamoylphosphatesynthaselargechainOS=NialliacirculansOX=1397GN=carBPE=3SV=1	tr|A0A553SP82|A0A553SP82_NIACICarbamoylphosphatesynthaselargechainOS=NialliacirculansOX=1397GN=carBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.5538330078125	3	402.576185	1204.70673	1.5018	0.00060459	-0.59223	-0.00023842	0.90958	0.00036618	402.5758293943933	57.35	0.55204	57.35	57.18	57.732	0					20	12	3	0	0	0	0.02558	1	4847	4847		23.514	0	1	341670			20392	34014	16625	16648	22756	22756					0.11256000405523992
IQTFRLKK	8	Unmodified	_IQTFRLKK_					0	0	0			REV__G6PC2|p.L69Gfs*55|1|0.5|ENSG00000152254|chr2:168901530-168901542|TTAAATCTTATAT/-|frameshift_variant	REV__G6PC2|p.L69Gfs*55|1|0.5|ENSG00000152254|chr2:168901530-168901542|TTAAATCTTATAT/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3270874023438	2	517.329476	1032.6444	-0.96898	-0.00050128	0.18183	9.4066E-05	-0.78715	-0.00040722	517.3296389860662	52.976	1.0878	50.162	49.887	50.975	-2.8139					50	21	3	0	0	0	0.6962	1	3570	3570		44.117	0	1	189920	+		20393	28147	16626	16649	22757	22757					0.129383188478414
IQTIGRAAR	9	Unmodified	_IQTIGRAAR_					0	0	0		tr|A0A553SJ12|A0A553SJ12_NIACIUvrABCsystemproteinBOS=NialliacirculansOX=1397GN=uvrBPE=3SV=1;tr|A0A7D6ZI26|A0A7D6ZI26_9CLOTUvrABCsystemproteinBOS=ClostridiumintestinaleOX=36845GN=uvrBPE=3SV=1	tr|A0A553SJ12|A0A553SJ12_NIACIUvrABCsystemproteinBOS=NialliacirculansOX=1397GN=uvrBPE=3SV=1;tr|A0A7D6ZI26|A0A7D6ZI26_9CLOTUvrABCsystemproteinBOS=ClostridiumintestinaleOX=36845GN=uvrBPE=3SV=1	tr|A0A553SJ12|A0A553SJ12_NIACIUvrABCsystemproteinBOS=NialliacirculansOX=1397GN=uvrBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	493.2988586425781	2	493.298707	984.582862	3.1299	0.001544	-3.147	-0.0015524	-0.017108	-8.4391E-06	493.29693905803276	26.988	0.77444	24.278	24.097	24.871	-2.7097					47	21	3	0	0	0	0.63422	1	422	422		27.882	1.1893	1	72756			20394	33451;35602	16627	16650	22758	22758					0.08995387148547707
IQTKEKWSL	9	Unmodified	_IQTKEKWSL_					0	0	0			REV__ENST00000328788.5_1_9:85863143-85863278:-|nuORF	REV__ENST00000328788.5_1_9:85863143-85863278:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.2805786132812	2	566.821681	1131.62881	2.0341	0.001153	0.12112	6.8652E-05	2.1552	0.0012216	566.8215275116926	110.21	0.81014	110.21	109.86	110.67	0					43	17	4	0	0	0	0.027462	1	12467	12467		21.96	0	1	1518800	+		20395	24513	16628	16651	22759	22759					0.06825987540150891
IQTKLARRA	9	Unmodified	_IQTKLARRA_					0	0	0		tr|A0A7D7A548|A0A7D7A548_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05785PE=4SV=1	tr|A0A7D7A548|A0A7D7A548_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05785PE=4SV=1	tr|A0A7D7A548|A0A7D7A548_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05785PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.7767944335938	2	528.835457	1055.65636	-0.68489	-0.0003622	2.5172	0.0013312	1.8324	0.00096901	528.8365684594313	93.703	0.68068	92.603	92.329	93.01	-1.0995					43	12	5	0	0	0	0.027462	1	8386	8386		21.96	1.013	1	187240			20396	36158	16629	16652	22760	22760					0.13075935591041343
IQTKMEEI	8	Unmodified	_IQTKMEEI_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4	nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	OvCa99_classI_Rep5	1	496.2614440917969	2	496.260068	990.505582	-1.0546	-0.00052334	0.937	0.00046499	-0.11758	-5.835E-05	496.2603243249172	65.609	0.71013	65.609	65.385	66.096	0					40	17	3	0	0	0	0.29515	1	6029	6029		108.09	8.7125	1	4950300			20397	1464;3986	16630	16653	22761	22761					0.00994988097352234
IQTKVNYV	8	Unmodified	_IQTKVNYV_					0	0	0		AP1B1|p.T737Rfs*121|1|0.13|ENSG00000100280|chr22:29334369-29334370|-/CCCA|frameshift_variant;AP1B1|p.G736Afs*18|1|0.18|ENSG00000100280|chr22:29334367-29334368|-/TACCG|frameshift_variant;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1	AP1B1|p.T737Rfs*121|1|0.13|ENSG00000100280|chr22:29334369-29334370|-/CCCA|frameshift_variant;nc|ENSG00000006125|P63010-3|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	MULTI-MSMS	OvCa99_classI_Rep5	1	482.7779541015625	2	482.776742	963.538931	0.19818	9.5676E-05	0.14911	7.1985E-05	0.34729	0.00016766	482.7767013807503	62.564	0.56697	62.564	62.335	62.902	0					28	13	3	0	0	0	0.27528	1	5570	5570		111.65	13.019	1	2726900			20398	97;872	16631	16654	22762	22762					0.05570357931560466
IQTLNNSEL	9	Unmodified	_IQTLNNSEL_					0	0	0			REV__ENST00000482399.5_1_6:33239515-33239650:-|nuORF	REV__ENST00000482399.5_1_6:33239515-33239650:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	516.270751953125	2	516.272021	1030.52949	0.40463	0.0002089	0.038514	1.9884E-05	0.44315	0.00022878	516.2718571628571	79.196	1.1782	77.457	77.196	78.375	-1.7398					45	22	3	0	0	0	0.35444	1	6649	6649		56.721	3.3696	1	256390	+		20399	26501	16632	16655	22763	22763					0.01544544855391905
IQTSRPQTI	9	Unmodified	_IQTSRPQTI_					0	0	0		VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant;nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;ENST00000513016.5_1_5:82832752-82876250:+|nuORF	VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant	VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	522.2969970703125	2	522.29583	1042.57711	-0.78169	-0.00040827	0.4095	0.00021388	-0.37218	-0.00019439	522.2959167737815	52.329	0.86774	52.329	51.829	52.697	0					46	19	5	0	0	0	0.066171	1	4092	4092		109.44	1.3513	1	2487700			20400	1099	16633	16656	22764	22764					0.057522438462456194
IQTTSFTLK	9	Unmodified	_IQTTSFTLK_					0	0	0			REV__ENSG00000151687|ENST00000684021|ANKAR	REV__ENSG00000151687|ENST00000684021|ANKAR	MULTI-MSMS	OvCa9_classI_Rep3	3	519.7933959960938	2	519.795132	1037.57571	1.5307	0.00079564	-4.1853	-0.0021755	-2.6546	-0.0013798	519.7927708482009	121.53	4.9018	120.5	119.85	124.76	-1.0286					197	93	4	0	0	0	0.33652	1	9364	9364		58.782	3.2778	1	827300	+		20401	20247	16634	16657	22765	22765					0.058426097574511004
IQVALLGEGAD	11	Unmodified	_IQVALLGEGAD_					0	0	0			REV__nc|ENSG00000136068|O75369-8|FLNB;REV__nc|ENSG00000196924|P21333-2|FLNA	REV__nc|ENSG00000196924|P21333-2|FLNA	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.7926635742188	2	543.295496	1084.57644	1.1808	0.0006415	-4.2736	-0.0023218	-3.0928	-0.0016803	543.2929214966213	109.54	2.1368	109.54	108.93	111.07	0					97	47	4	0	0	0	0.025597	1	12464	12464		60.118	8.7828	1	3215400	+		20402	22875;19356	16635	16658	22766	22766					0.03753404406529626
IQVATKEEEL	10	Unmodified	_IQVATKEEEL_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MSMS	OvCa99_classI_Rep5	1	580.8142700195312	2	580.313886	1158.61322	-1.6812	-0.0009756	-2.0194	-0.0011719	-3.7005	-0.0021475	580.8137028999474	43.931	0.61045	43.931	43.694	44.305	0					29	13	4	0	0	0	0.58067	1	2947	2947		44.377	0	1	1205600			20403	3800	16636	16659	22767	22767					0.040256562324202605
IQVGNFNQTI	10	Unmodified	_IQVGNFNQTI_					0	0	0		nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1;PLXND1|p.E1457*|1|0.09|ENSG00000004399|chr3:129565492-129565493|-/A|frameshift_variant;ENST00000514990.1_1_3:129288623-129290035:-|nuORF	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.3424072265625	2	567.301113	1132.58767	2.2525	0.0012778	3.0915	0.0017538	5.344	0.0030317	567.3026331859402	95.358	0.62402	95.358	95.161	95.785	0					31	14	3	0	0	0	0.026956	1	10434	10434		26.693	0	1	432950			20404	825	16637	16660	22768	22768					0.026682265006684247
IQVHNIAE	8	Unmodified	_IQVHNIAE_					0	0	0			REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B	REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.2521057128906	2	462.250892	922.48723	-0.21893	-0.0001012	-0.19362	-8.9499E-05	-0.41255	-0.0001907	462.25068431202817	60.056	1.134	56.626	56.16	57.294	-3.43					39	22	2	0	0	0	0.61436	1	4048	4048		60.972	2.19	1	495950	+		20405	19288	16638	16661	22769	22769					0.022886142376592034
IQVHNIAE	8	Unmodified	_IQVHNIAE_					0	0	0			REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B	REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	462.250892	922.48723	-0.44759	-0.0002069	0.42534	0.00019661	-0.022251	-1.0286E-05	462.25094207735395	59.484	0.98665	56.704	56.347	57.333	-2.7801	0.038968	0.00024526	NaN	60.972	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90488	+		20406	19288	16638	16661							0.022886142376592034
IQVHNIAE	8	Unmodified	_IQVHNIAE_					0	0	0			REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B	REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	462.250892	922.48723	-0.21893	-0.0001012	-0.19362	-8.9499E-05	-0.41255	-0.0001907	462.25068431202817	60.056	1.134	56.626	56.16	57.294	-3.43	-0.038968	-0.00032696	NaN	60.972	39	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	495950	+		20407	19288	16638	16661							0.022886142376592034
IQVIRSIGVY	10	Unmodified	_IQVIRSIGVY_					0	0	0		ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	MULTI-MSMS	OvCa99_classI_Rep5	1	574.347412109375	2	574.345323	1146.67609	1.8775	0.0010783	0.29823	0.00017129	2.1757	0.0012496	574.3454077922936	100.21	0.9532	100.21	99.777	100.73	0					63	22	5	0	0	0	0.11648	2	11110	11088;11110		109.44	19.343	1	10637000			20408	5467	16639	16662	22770;22771	22771					0.10862266811136578
IQVIRSIGVY	10	Unmodified	_IQVIRSIGVY_					0	0	0		ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	MULTI-MSMS	OvCa9_classI_Rep4_	4	574.3466796875	2	574.345323	1146.67609	-0.89277	-0.00051276	-0.39225	-0.00022529	-1.285	-0.00073805	574.3449586362831	101.45	2.4722	99.179	98.03	100.5	-2.2665					104	48	3	0	0	0	0.35539	2	9185	9174;9185		74.165	7.1167	1	675430			20409	5467	16639	16662	22772;22773	22773					0.10862266811136578
IQVLQAGFCA	10	Unmodified	_IQVLQAGFCA_					0	0	0			REV__ENST00000557173.1_1_12:95228580-95228931:+|nuORF	REV__ENST00000557173.1_1_12:95228580-95228931:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2874145507812	2	525.276052	1048.53755	-1.0086	-0.0005298	-1.4439	-0.00075845	-2.4525	-0.0012883	525.2754021769888	39.72	0.38206	39.72	39.589	39.971	0					14	8	2	0	0	0	0.026871	1	2368	2368		29.15	0	1	215980	+		20410	27571	16640	16663	22774	22774					0.015224005711615973
IQVRGRTGTH	10	Unmodified	_IQVRGRTGTH_					0	0	0			REV__ENST00000585348.1_1_17:42428425-42428671:+|nuORF	REV__ENST00000585348.1_1_17:42428425-42428671:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	563.2994995117188	2	562.817796	1123.62104	0.20639	0.00011616	1.6049	0.00090327	1.8113	0.0010194	562.8191117490817	119.34	0.69431	118.31	118.08	118.77	-1.0271					26	13	3	0	0	0	0.027118	1	9068	9068		32.812	13.452	1	23512	+		20411	27856	16641	16664	22775	22775					0.06417273063243556
IQVRNTVKN	9	Unmodified	_IQVRNTVKN_					0	0	0		nc|ENSG00000263417|Q86UQ5|GTSCR1	nc|ENSG00000263417|Q86UQ5|GTSCR1	nc|ENSG00000263417|Q86UQ5|GTSCR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.2499389648438	2	536.317097	1070.61964	-1.3685	-0.00073393	-2.8261	-0.0015157	-4.1945	-0.0022496	536.3153957687185	121.15	0.81725	119.81	119.59	120.41	-1.3479					27	15	2	0	0	0	0.027198	1	11412	11412		85.161	15.533	1	95482			20412	15366	16642	16665	22776	22776					0.08715638974490503
IQVRNTVKN	9	Unmodified	_IQVRNTVKN_					0	0	0		nc|ENSG00000263417|Q86UQ5|GTSCR1	nc|ENSG00000263417|Q86UQ5|GTSCR1	nc|ENSG00000263417|Q86UQ5|GTSCR1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	536.317097	1070.61964	1.7366	0.00093138	3.4851	0.0018691	5.2217	0.0028005	536.3186765372076	120.03	0.44184	120.03	119.74	120.18	0	0.093872	0.0062237	NaN	85.161	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101830			20413	15366	16642	16665							0.08715638974490503
IQVTKVTQV	9	Unmodified	_IQVTKVTQV_					0	0	0		nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.3138427734375	2	508.310949	1014.60735	-0.26965	-0.00013707	0.50303	0.00025569	0.23337	0.00011863	508.3110907981976	69.493	0.77736	69.493	69.228	70.005	0					44	18	4	0	0	0	0.061524	1	6605	6605		112.11	8.0936	1	3559800			20414	1922	16643	16666	22777	22777					0.10062602511425212
IQVTVPDNMR	10	Unmodified	_IQVTVPDNMR_					0	0	0		tr|A0A7D6ZZY6|A0A7D6ZZY6_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_08145PE=4SV=1	tr|A0A7D6ZZY6|A0A7D6ZZY6_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_08145PE=4SV=1	tr|A0A7D6ZZY6|A0A7D6ZZY6_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_08145PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	586.8034057617188	2	586.808248	1171.60194	-5.211	-0.0030579	-3.6831	-0.0021613	-8.8941	-0.0052191	586.8058911238584	159.27	2.2635	159.04	158.53	160.79	-0.22696					99	45	3	0	0	0	0.83261	1	16187	16187		14.865	0.72775	1	107570			20415	35979	16644	16667	22778	22778					0.023005556572798014
IQVTWKAPK	9	Unmodified	_IQVTWKAPK_					0	0	0		ENSG00000177103|ENST00000651296|DSCAML1;nc|ENSG00000177103|Q8TD84-2|DSCAML1;DSCAML1|p.N1856Tfs*49|1|0.04|ENSG00000177103|chr11:117431023-117431023|C/-|frameshift_variant	ENSG00000177103|ENST00000651296|DSCAML1	ENSG00000177103|ENST00000651296|DSCAML1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.30615234375	2	535.821484	1069.62842	-0.15634	-8.3768E-05	-2.9431	-0.001577	-3.0994	-0.0016607	535.8196966734836	73.027	0.55445	73.027	72.804	73.359	0					20	13	2	0	0	0	0.027411	1	7111	7111		54.776	15.523	1	260770			20416	7658	16645	16668	22779	22779					0.09638612610933706
IQVYCWKI	8	Unmodified	_IQVYCWKI_					0	0	0		ENST00000495858.1_1_21:38602860-38605737:-|nuORF	ENST00000495858.1_1_21:38602860-38605737:-|nuORF	ENST00000495858.1_1_21:38602860-38605737:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.8090209960938	2	526.783513	1051.55247	-1.2381	-0.00065223	3.5957	0.0018942	2.3576	0.0012419	526.7846345730845	73.965	1.1454	70.735	70.337	71.483	-3.2308					53	23	3	0	0	0	0.028476	1	5842	5842		55.504	0	1	80583			20417	12781	16646	16669	22780	22780					0.0287589243914681
IQWLEAEII	9	Unmodified	_IQWLEAEII_					0	0	0		nc|ENSG00000163430|Q12841-2|FSTL1;ENSG00000163430|ENST00000295633|FSTL1	nc|ENSG00000163430|Q12841-2|FSTL1	nc|ENSG00000163430|Q12841-2|FSTL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.8109741210938	2	557.810782	1113.60701	-0.44838	-0.00025011	0.49582	0.00027658	0.047439	2.6462E-05	557.8109927845255	146.06	1.578	144.62	144.25	145.82	-1.4357					89	30	5	0	0	0	0.53483	1	14318	14318		39.253	0	1	878120			20418	6303	16647	16670	22781	22781					0.05475182791565203
IQYEENAQR	9	Unmodified	_IQYEENAQR_					0	0	0			REV__ENST00000509177.1_1_8:15480615-15508356:+|nuORF	REV__ENST00000509177.1_1_8:15480615-15508356:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.3250732421875	2	575.778002	1149.54145	-1.2975	-0.00074705	-1.5978	-0.00091996	-2.8952	-0.001667	575.7775704713354	64.207	0.3599	64.207	63.974	64.334	0					13	8	3	0	0	0	0.027462	1	5791	5791		16.473	0.83134	1	135940	+		20419	17675	16648	16671	22782	22782					-0.027338384014456096
IQYFSPVNM	9	Unmodified	_IQYFSPVNM_					0	0	0		ENST00000356721.3_1_16:48396017-48396254:-|nuORF	ENST00000356721.3_1_16:48396017-48396254:-|nuORF	ENST00000356721.3_1_16:48396017-48396254:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.2930908203125	2	549.76806	1097.52157	-0.88022	-0.00048391	-4.3453	-0.0023889	-5.2255	-0.0028728	549.765408980924	59.282	0.52771	59.282	59.12	59.647	0					32	13	3	0	0	0	0.027462	1	5124	5124		23.042	0	1	1159700			20420	10699	16649	16672	22783	22783					-0.023293056657394118
IQYIRPVFV	9	Unmodified	_IQYIRPVFV_					0	0	0		ENSG00000153395|ENST00000283415|LPCAT1;ENST00000507282.1_1_5:1488500-1495016:-|nuORF;ENST00000513757.5_1_5:1479693-1494872:-|nuORF	ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.2806396484375	2	567.837134	1133.65972	1.6717	0.00094924	-0.61057	-0.00034671	1.0611	0.00060253	567.8367083491454	111.19	0.66826	111.19	110.85	111.51	0					35	14	3	0	0	0	0.027448	1	12624	12624		53.351	8.9743	1	526900			20421	5679	16650	16673	22784	22784					0.09823185645018384
IQYNSSEDE	9	Unmodified	_IQYNSSEDE_					0	0	0		ENSG00000173621|ENST00000309602|LRFN4	ENSG00000173621|ENST00000309602|LRFN4	ENSG00000173621|ENST00000309602|LRFN4	MSMS	OvCa99_classI_Rep5	1	542.7284545898438	2	542.725101	1083.43565	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.857	1	88.857	88.357	89.357	0								0	0	0	0.15102	1	9464	9464		64.207	7.4862	1				20422	7399	16651	16674	22785	22785					-0.10273219037549097
IQYPILLKD	9	Unmodified	_IQYPILLKD_					0	0	0		ENSG00000168038|ENST00000301831|ULK4	ENSG00000168038|ENST00000301831|ULK4	ENSG00000168038|ENST00000301831|ULK4	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.8540649414062	2	551.828975	1101.6434	2.3449	0.001294	-4.2658	-0.002354	-1.9209	-0.00106	551.826205035538	91.681	0.46436	91.681	91.415	91.879	0					22	10	3	0	0	0	0.027255	1	9886	9886		63.534	0	1	383720			20423	6868	16652	16675	22786	22786					0.09664059688293491
IQYSKVKKVLI	11	Unmodified	_IQYSKVKKVLI_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	OvCa9_classI_Rep3	3	440.290283203125	3	440.286746	1317.83841	1.9822	0.00087273	4.1884	0.0018441	6.1706	0.0027168	440.28853407751586	61.967	0.75494	58.899	58.622	59.377	-3.0685					35	19	2	0	0	0	0.7252	1	2193	2193		12.957	0	1	31475	+		20424	18516	16653	16676	22787	22787					0.19220230493283452
IQYYLTSPL	9	Unmodified	_IQYYLTSPL_					0	0	0			REV__tr|A0A7D6VN23|A0A7D6VN23_9CLOTDUF1186domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17140PE=4SV=1	REV__tr|A0A7D6VN23|A0A7D6VN23_9CLOTDUF1186domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17140PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	549.8265380859375	2	549.297507	1096.58046	0.44515	0.00024452	-3.7583	-0.0020644	-3.3132	-0.0018199	549.2952103366325	109.59	1.3852	109.42	108.67	110.06	-0.17237					53	27	3	0	0	0	0.027462	1	10314	10314		19.997	0	1	52900	+		20425	31156	16654	16677	22788	22788					0.03603493900232024
IRAAIKHV	8	Unmodified	_IRAAIKHV_					0	0	0			REV__ENSG00000104112|ENST00000220478|SCG3	REV__ENSG00000104112|ENST00000220478|SCG3	MULTI-MSMS	OvCa99_classI_Rep5	1	454.2973937988281	2	454.295436	906.57632	2.8132	0.001278	-0.32025	-0.00014549	2.4929	0.0011325	454.2951870819009	75.488	0.55484	75.488	75.168	75.723	0					29	13	3	0	0	0	0.60486	1	7526	7526		62.978	2.6845	1	824450	+		20426	17644	16655	16678	22789	22789					0.11929493987850037
IRAAWTRAL	9	Unmodified	_IRAAWTRAL_					0	0	0		NID1|p.H677Vfs*128|1|0.3|ENSG00000116962|chr1:236024169-236024170|-/AC|frameshift_variant;nc|ENSG00000116962|P14543-2|NID1;ENSG00000116962|ENST00000264187|NID1	NID1|p.H677Vfs*128|1|0.3|ENSG00000116962|chr1:236024169-236024170|-/AC|frameshift_variant	NID1|p.H677Vfs*128|1|0.3|ENSG00000116962|chr1:236024169-236024170|-/AC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	529.3190307617188	2	529.3169	1056.61925	-0.16226	-8.5889E-05	0.11397	6.0324E-05	-0.048297	-2.5564E-05	529.316947948243	71.13	1.7723	71.13	70.761	72.533	0					94	43	5	0	0	0	0.1243	1	6846	6846		90.601	19.305	1	14159000			20427	3221	16656	16679	22790	22790					0.09320264045254589
IRAGDLFSLY	10	Unmodified	_IRAGDLFSLY_					0	0	0			REV__nc|ENSG00000124721|Q96JB1-2|DNAH8	REV__nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.8125	2	577.813856	1153.61316	2.0438	0.0011809	-0.22583	-0.00013049	1.8179	0.0010504	577.813572801187	84.763	0.4966	84.763	84.55	85.046	0					18	11	2	0	0	0	0.026782	1	8869	8869		37.812	0	1	1169000	+		20428	18702	16657	16680	22791	22791					0.04249701023104535
IRAHVAKL	8	Unmodified	_IRAHVAKL_					0	0	0		ENSG00000153802|ENST00000283916|TMPRSS11D	ENSG00000153802|ENST00000283916|TMPRSS11D	ENSG00000153802|ENST00000283916|TMPRSS11D	MULTI-SECPEP	OvCa9_classI_Rep4_	4	454.26580810546875	2	454.295436	906.57632	0.10073	4.5762E-05	0.40634	0.0001846	0.50708	0.00023036	454.29519185336346	104.25	2.0484	102.13	101.69	103.74	-2.1192					76	39	3	0	0	0	0.028476	1	9483	9483		60.294	0	1	43010			20429	5694	16658	16681	22792	22792					0.11929493987850037
IRAKTIGR	8	Unmodified	_IRAKTIGR_					0	0	0		tr|A0A7D6VTH8|A0A7D6VTH8_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02410PE=4SV=1	tr|A0A7D6VTH8|A0A7D6VTH8_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02410PE=4SV=1	tr|A0A7D6VTH8|A0A7D6VTH8_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02410PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.22454833984375	2	457.798343	913.582134	-0.398	-0.0001822	0.11804	5.4039E-05	-0.27996	-0.00012816	457.7982990764205	29.211	0.39896	29.211	29.037	29.436	0					11	7	2	0	0	0	0.028476	1	1040	1040		12.959	0	1	102190			20430	35119	16659	16682	22793	22793					0.12188592499512652
IRALLKEGY	9	Unmodified	_IRALLKEGY_					0	0	0			REV__tr|A0A553SJP8|A0A553SJP8_NIACIFAD-bindingoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_17315PE=4SV=1	REV__tr|A0A553SJP8|A0A553SJP8_NIACIFAD-bindingoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_17315PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8162841796875	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.64427	1	11328	11328		26.693	2.1737	1	178650	+		20431	30025	16660	16683	22794	22794					0.09498308748334239
IRALSPTSI	9	Unmodified	_IRALSPTSI_					0	0	0			REV__HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|36|2|sense	REV__HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|36|2|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	479.28955078125	2	479.290017	956.565481	0.48542	0.00023266	-0.92112	-0.00044148	-0.4357	-0.00020882	479.28944941406894	42.946	1.3362	40.237	39.917	41.253	-2.7097					73	26	4	0	0	0	0.55588	1	2337	2337		37.159	1.5408	1	745960	+		20432	28221	16661	16684	22795	22795					0.0854604682289164
IRARDQKKPL	10	Unmodified	_IRARDQKKPL_					0	0	0			REV__nc|ENSG00000153064|Q8NDB2-3|BANK1	REV__nc|ENSG00000153064|Q8NDB2-3|BANK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	612.8806762695312	2	612.880396	1223.74624	-1.8996	-0.0011642	4.1197	0.0025249	2.2202	0.0013607	612.8825563385681	125.86	0.68648	124.44	124.19	124.88	-1.4143					37	13	4	0	0	0	0.79213	1	11985	11985		19.997	2.6318	1	43346	+		20433	20318	16662	16685	22796	22796					0.1433156519960903
IRARDQKKPL	10	Unmodified	_IRARDQKKPL_					0	0	0			REV__nc|ENSG00000153064|Q8NDB2-3|BANK1	REV__nc|ENSG00000153064|Q8NDB2-3|BANK1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	612.880396	1223.74624	-0.12362	-7.5766E-05	2.1418	0.0013127	2.0182	0.0012369	612.8814664104791	124.68	0.64072	124.45	124.22	124.86	-0.23193	-0.01331	0.00030227	NaN	19.997	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37206	+		20434	20318	16662	16685							0.1433156519960903
IRARDQKKPL	10	Unmodified	_IRARDQKKPL_					0	0	0			REV__nc|ENSG00000153064|Q8NDB2-3|BANK1	REV__nc|ENSG00000153064|Q8NDB2-3|BANK1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	612.880396	1223.74624	2.9012	0.0017781	-0.40061	-0.00024552	2.5006	0.0015326	612.8798417827855	125.54	0.72401	124.49	124.26	124.99	-1.0519	0.028126	-0.0028141	NaN	19.997	33	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51482	+		20435	20318	16662	16685							0.1433156519960903
IRARDQKKPL	10	Unmodified	_IRARDQKKPL_					0	0	0			REV__nc|ENSG00000153064|Q8NDB2-3|BANK1	REV__nc|ENSG00000153064|Q8NDB2-3|BANK1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	612.880396	1223.74624	-1.8996	-0.0011642	4.1197	0.0025249	2.2202	0.0013607	612.8825563385681	125.86	0.68648	124.44	124.19	124.88	-1.4143	-0.014816	0.0027268	NaN	19.997	37	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43346	+		20436	20318	16662	16685							0.1433156519960903
IRAVEETDAGL	11	Unmodified	_IRAVEETDAGL_					0	0	0		ENSG00000162576|ENST00000309212|MXRA8;nc|ENSG00000162576|Q9BRK3-3|MXRA8;nc|ENSG00000162576|Q9BRK3-2|MXRA8;ENST00000464351.1_1_1:1290552-1290884:-|nuORF	ENSG00000162576|ENST00000309212|MXRA8	ENSG00000162576|ENST00000309212|MXRA8	MULTI-MSMS	OvCa99_classI_Rep5	1	587.3023681640625	2	587.309135	1172.60372	1.1494	0.00067505	-4.1862	-0.0024586	-3.0368	-0.0017835	587.3064285716006	143.61	1.0885	143.61	143.32	144.4	0					44	21	3	0	0	0	0.4646	1	16779	16779		56.434	3.0823	1	304580			20437	6195	16663	16686	22797	22797					0.02431887946909228
IRCVDDCNQNI	11	Unmodified	_IRCVDDCNQNI_					0	0	0			REV__nc|ENSG00000111737|Q15286-2|RAB35	REV__nc|ENSG00000111737|Q15286-2|RAB35	MULTI-SECPEP	OvCa99_classI_Rep5	1	647.339599609375	2	646.789729	1291.56491	2.3569	0.0015244	-4.4598	-0.0028846	-2.1029	-0.0013602	647.2859299619271	137.11	0.24089	137.11	137.01	137.26	0					6	4	2	0	0	0	0.025638	1	16001	16001		23.523	0	1	17577	+		20438	18057	16664	16687	22798	22798					-0.06921483950782203
IRDDHIGAL	9	Unmodified	_IRDDHIGAL_					0	0	0		ENSG00000180104|ENST00000512944|EXOC3;ENST00000515601.6_1_5:465213-467010:+|nuORF	ENSG00000180104|ENST00000512944|EXOC3	ENSG00000180104|ENST00000512944|EXOC3	MULTI-MSMS	OvCa9_classI_Rep3	3	505.2754821777344	2	505.274898	1008.53524	-1.5633	-0.00078991	1.221	0.00061696	-0.3423	-0.00017295	505.27546017010985	85.18	1.6887	82.959	82.498	84.187	-2.2204					78	30	3	0	0	0	0.13154	1	4992	4992		88.643	0.88857	1	1500400			20439	7856	16665	16688	22799	22799					0.03131688157714052
IRDIVKVLL	9	Unmodified	_IRDIVKVLL_					0	0	0			REV__ENSG00000115524|ENST00000335508|SF3B1	REV__ENSG00000115524|ENST00000335508|SF3B1	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.2936401367188	2	534.860609	1067.70667	2.6237	0.0014033	-0.77095	-0.00041235	1.8527	0.00099096	534.8601696526122	94.331	0.46835	94.331	94.136	94.604	0					18	10	3	0	0	0	0.027462	1	10244	10244		23.523	4.4192	1	329460	+		20440	18250	16666	16689	22800	22800					0.17552045196180188
IRDVREAFWEL	11	Unmodified	_IRDVREAFWEL_					0	0	0			REV__ENSG00000013016|ENST00000322054|EHD3;REV__ENSG00000110047|ENST00000320631|EHD1	REV__ENSG00000013016|ENST00000322054|EHD3	MULTI-SECPEP	OvCa9_classI_Rep3	3	478.79327392578125	3	478.589376	1432.7463	-0.46409	-0.00022211	-3.379	-0.0016171	-3.8431	-0.0018392	478.58776206557235	82.562	1.3795	80.265	79.887	81.267	-2.2963					78	27	4	0	0	0	0.025677	1	4719	4719		44.639	21.262	1	490170	+		20441	16503;17966	16667	16690	22801	22801					0.047235204089702165
IRDWRGPQ	8	Unmodified	_IRDWRGPQ_					0	0	0		ENSG00000185453|ENST00000614654|ZSWIM9;nc|ENSG00000185453|Q86XI8|ZSWIM9	ENSG00000185453|ENST00000614654|ZSWIM9	ENSG00000185453|ENST00000614654|ZSWIM9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.3106079101562	2	514.275232	1026.53591	-0.32506	-0.00016717	0.27222	0.00014	-0.052832	-2.717E-05	514.2754648515878	105.33	0.79424	103.31	103.05	103.85	-2.0161					22	15	2	0	0	0	0.028476	1	9614	9614		40.573	12.69	1	32091			20442	8254	16668	16691	22802	22802					0.02370527597418004
IRDWRGPQ	8	Unmodified	_IRDWRGPQ_					0	0	0		ENSG00000185453|ENST00000614654|ZSWIM9;nc|ENSG00000185453|Q86XI8|ZSWIM9	ENSG00000185453|ENST00000614654|ZSWIM9	ENSG00000185453|ENST00000614654|ZSWIM9	MULTI-MATCH	OvCa9_classI_Rep3	3		2	514.275232	1026.53591	0.72996	0.0003754	-2.6808	-0.0013787	-1.9509	-0.0010033	514.2740313250985	104.67	0.41293	103.23	103.02	103.43	-1.4347	-0.041057	-0.00084812	NaN	31.955	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23202			20443	8254	16668	16691							0.02370527597418004
IRDYLCERV	9	Unmodified	_IRDYLCERV_					0	0	0			REV__nc|ENSG00000162373|Q7L4P6-2|BEND5	REV__nc|ENSG00000162373|Q7L4P6-2|BEND5	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8021850585938	2	583.802965	1165.59138	0.97841	0.0005712	-0.94752	-0.00055316	0.03089	1.8034E-05	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.60342	1	1348	1348		31.53	8.0071	1	155970	+		20444	20728	16669	16692	22803	22803					0.015205730028355902
IRECIVKIV	9	Unmodified	_IRECIVKIV_					0	0	0		tr|A0A7D6VW00|A0A7D6VW00_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01965PE=4SV=1	tr|A0A7D6VW00|A0A7D6VW00_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01965PE=4SV=1	tr|A0A7D6VW00|A0A7D6VW00_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01965PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.8313598632812	2	536.830995	1071.64744	1.558	0.00083638	-2.3826	-0.0012791	-0.82461	-0.00044267	536.8293457662043	122.99	0.60287	122.99	122.68	123.28	0					26	12	3	0	0	0	0.42676	1	14163	14163		49.442	5.3247	1	254980			20445	35240	16670	16693	22804	22804					0.11447825910340725
IREDEEEVE	9	Unmodified	_IREDEEEVE_					0	0	0		nc|ENSG00000198216|Q15878-2|CACNA1E;nc|ENSG00000198216|Q15878-3|CACNA1E;ENSG00000198216|ENST00000367573|CACNA1E	nc|ENSG00000198216|Q15878-2|CACNA1E	nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-SECPEP	OvCa9_classI_Rep3	3	574.34619140625	2	574.259308	1146.50406	-1.4139	-0.00081195	-1.9747	-0.001134	-3.3886	-0.0019459	574.2574013640365	100.88	0.50022	99.278	98.946	99.446	-1.6053					14	9	2	0	0	0	0.027462	1	6875	6875		23.042	0	1	13887			20446	8797	16671	16694	22805	22805					-0.06332974457700402
IREEMGDKV	9	Unmodified	_IREEMGDKV_					0	0	0		tr|A0A553SK33|A0A553SK33_NIACIGlutamateracemaseOS=NialliacirculansOX=1397GN=racEPE=3SV=1	tr|A0A553SK33|A0A553SK33_NIACIGlutamateracemaseOS=NialliacirculansOX=1397GN=racEPE=3SV=1	tr|A0A553SK33|A0A553SK33_NIACIGlutamateracemaseOS=NialliacirculansOX=1397GN=racEPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.2623901367188	2	538.773874	1075.53319	-0.29576	-0.00015935	0.9302	0.00050117	0.63444	0.00034182	538.7756076887856	51.611	0.41454	51.611	51.332	51.747	0					20	9	3	0	0	0	0.027462	1	4004	4004		29.15	1.2673	1	265440			20447	33572	16672	16695	22806	22806					-0.001551086423887682
IREETVSL	8	Unmodified	_IREETVSL_					0	0	0		ENSG00000008018|ENST00000262193|PSMB1;SPON1-PSMB1|1|fusion	ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.7650146484375	2	473.763832	945.513111	0.54807	0.00025966	-0.88245	-0.00041807	-0.33438	-0.00015842	473.7633142764397	56.24	1.2651	52.945	52.567	53.832	-3.2944					70	24	4	0	0	0	0.37357	2	3590	3580;3590		93.195	8.2799	1	1136500			20448	910	16673	16696	22807;22808	22808					0.03817463689279066
IREETVSL	8	Unmodified	_IREETVSL_					0	0	0		ENSG00000008018|ENST00000262193|PSMB1;SPON1-PSMB1|1|fusion	ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	473.763832	945.513111	-1.0019	-0.00047467	1.2389	0.00058693	0.23696	0.00011226	473.76420481177126	55.953	0.94035	53.149	52.731	53.671	-2.804	0.10177	0.0016149	NaN	93.195	52	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232520			20449	910	16673	16696							0.03817463689279066
IREFEIKKRQN	11	Unmodified	_IREFEIKKRQN_					0	0	0			REV__tr|A0A7D7AH97|A0A7D7AH97_9CLOTSerinehydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11635PE=4SV=1	REV__tr|A0A7D7AH97|A0A7D7AH97_9CLOTSerinehydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11635PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.2871398925781	3	487.615925	1459.82595	-0.44434	-0.00021667	0.16161	7.8805E-05	-0.28273	-0.00013786	487.61592721326895	47.982	0.9455	45.273	45.034	45.979	-2.7097					35	18	3	0	0	0	0.026416	1	3021	3021		11.932	3.898	1	57887	+		20450	32728	16674	16697	22809	22809					0.11442587082933642
IREGKLSQ	8	Unmodified	_IREGKLSQ_					0	0	0			REV__ENST00000376552.6_1_9:82186844-82187042:+|nuORF	REV__ENST00000376552.6_1_9:82186844-82187042:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.27081298828125	2	465.771991	929.529429	0.18984	8.8421E-05	2.4567	0.0011443	2.6466	0.0012327	465.7699329465934	61.157	1.3999	57.727	57.294	58.694	-3.43					72	28	4	0	0	0	0.028476	1	4179	4179		44.117	3.5442	1	407710	+		20451	25102	16675	16698	22810	22810					0.06184589646045424
IREGKLSQ	8	Unmodified	_IREGKLSQ_					0	0	0			REV__ENST00000376552.6_1_9:82186844-82187042:+|nuORF	REV__ENST00000376552.6_1_9:82186844-82187042:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	465.771991	929.529429	0.32602	0.00015185	0.028365	1.3211E-05	0.35438	0.00016506	465.7717495624817	57.934	0.37822	57.934	57.775	58.153	0	0.10346	-0.00017657	NaN	44.117	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	312570	+		20452	25102	16675	16698							0.06184589646045424
IREGMKRVE	9	Unmodified	_IREGMKRVE_					0	0	0		ENSG00000134901|ENST00000376004|POGLUT2;ENST00000460338.5_1_13:103436847-103443499:-|nuORF	ENSG00000134901|ENST00000376004|POGLUT2	ENSG00000134901|ENST00000376004|POGLUT2	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.3126220703125	2	559.310958	1116.60736	3.1865	0.0017822	-1.4542	-0.00081335	1.7323	0.00096888	559.3102736773027	107.85	0.21294	107.85	107.73	107.94	0					8	4	2	0	0	0	0.027462	1	12175	12175		14.137	1.3254	1	159400			20453	4345	16676	16699	22811	22811					0.05372279239782074
IREHIKLT	8	Unmodified	_IREHIKLT_					0	0	0			REV__ENSG00000177311|ENST00000321464|ZBTB38	REV__ENSG00000177311|ENST00000321464|ZBTB38	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.8097229003906	2	505.311284	1008.60801	-1.2848	-0.00064921	0.6057	0.00030607	-0.67907	-0.00034314	505.31142909458856	73.475	1.3868	70.079	69.785	71.172	-3.3961					51	28	3	0	0	0	0.028476	1	5787	5787		23.042	0	1	383610	+		20454	21998	16677	16700	22812	22812					0.1040544195111579
IREHILMKN	9	Unmodified	_IREHILMKN_					0	0	0		nc|ENSG00000290988|Q8N8C0-2|ZNF781;nc|ENSG00000290988|Q8N8C0|ZNF781	nc|ENSG00000290988|Q8N8C0-2|ZNF781	nc|ENSG00000290988|Q8N8C0-2|ZNF781	MULTI-MSMS	OvCa99_classI_Rep5	1	577.3296508789062	2	577.32915	1152.64375	1.599	0.00092313	-0.76121	-0.00043947	0.83775	0.00048366	577.3284707570448	136.18	1.7014	136.18	135.31	137.01	0					61	35	3	0	0	0	0.44568	1	15812	15812		47.657	3.5405	1	69662			20455	15398	16678	16701	22813	22813					0.07353156136491634
IREKTALP	8	Unmodified	_IREKTALP_					0	0	0			REV__nc|ENSG00000048052|Q9UKV0-11|HDAC9	REV__nc|ENSG00000048052|Q9UKV0-11|HDAC9	MULTI-MSMS	OvCa9_classI_Rep3	3	464.28314208984375	2	464.284734	926.554916	-0.78612	-0.00036498	0.10523	4.8857E-05	-0.68089	-0.00031613	464.2847975981264	95.44	2.3134	93.544	92.964	95.278	-1.8956					168	45	5	0	0	0	0.62474	1	6302	6302		58.782	0	1	5965000	+		20456	16666	16679	16702	22814	22814					0.08870064168456793
IRELKTFLE	9	Unmodified	_IRELKTFLE_					0	0	0			REV__ENSG00000134602|ENST00000394334|STK26	REV__ENSG00000134602|ENST00000394334|STK26	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.30126953125	2	574.837331	1147.66011	-0.97969	-0.00056316	1.4943	0.00085898	0.51461	0.00029582	574.8380247867073	26.268	0.40067	26.268	26.142	26.542	0					11	7	2	0	0	0	0.027462	1	658	658		40.778	0	1	31387	+		20457	19215	16680	16703	22815	22815					0.09218560574208823
IRERIKIE	8	Unmodified	_IRERIKIE_					0	0	0		nc|ENSG00000007237|O60861-2|GAS7;nc|ENSG00000007237|O60861-1|GAS7;nc|ENSG00000007237|O60861-4|GAS7;ENSG00000007237|ENST00000432992|GAS7	nc|ENSG00000007237|O60861-2|GAS7	nc|ENSG00000007237|O60861-2|GAS7	MULTI-MSMS	OvCa9_classI_Rep3	3	528.8320922851562	2	528.82984	1055.64513	-1.2606	-0.00066662	3.5547	0.0018798	2.2941	0.0012132	528.8315788748213	83.741	3.631	81.48	80.867	84.498	-2.261					148	74	4	0	0	0	0.53252	1	4807	4807		74.255	2.3776	1	1382900			20458	897	16681	16704	22816	22816					0.11953113496861079
IREVVTEIR	9	Unmodified	_IREVVTEIR_					0	0	0		PDXDC1-NOB1|1|fusion;ENSG00000141101|ENST00000268802|NOB1	PDXDC1-NOB1|1|fusion	PDXDC1-NOB1|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	557.833984375	2	557.83258	1113.65061	-0.31358	-0.00017492	0.19503	0.00010879	-0.11855	-6.6132E-05	557.832674262918	70.31	1.1449	70.31	70.046	71.191	0					61	28	4	0	0	0	0.34132	1	6755	6755		58.23	0.41864	1	16779000			20459	4895	16682	16705	22817	22817					0.09832792288671044
IRFLYQEGE	9	Unmodified	_IRFLYQEGE_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa99_classI_Rep5	1	577.7974853515625	2	577.795663	1153.57677	2.4857	0.0014362	-0.11708	-6.7647E-05	2.3686	0.0013686	577.7958129946741	98.988	0.89244	98.988	98.596	99.488	0					59	21	5	0	0	0	0.44568	1	10920	10920		47.657	3.5405	1	5084200	+		20460	28942	16683	16706	22818	22818					0.0061282412636956
IRFNPVRR	8	Unmodified	_IRFNPVRR_					0	0	0			REV__ENST00000550722.5_1_12:112630894-112631429:-|nuORF	REV__ENST00000550722.5_1_12:112630894-112631429:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2933349609375	2	529.322517	1056.63048	-0.95317	-0.00050454	-0.13003	-6.8827E-05	-1.0832	-0.00057336	529.3223774738372	34.888	0.52073	34.888	34.725	35.246	0					23	10	3	0	0	0	0.028476	1	1745	1745		33.516	17.042	1	255090	+		20461	27479	16684	16707	22819	22819					0.10443086139412117
IRFRRYDSN	9	Unmodified	_IRFRRYDSN_					0	0	0			REV__tr|A0A7D6VUJ1|A0A7D6VUJ1_9CLOTUvrABCsystemproteinCOS=ClostridiumintestinaleOX=36845GN=uvrCPE=3SV=1	REV__tr|A0A7D6VUJ1|A0A7D6VUJ1_9CLOTUvrABCsystemproteinCOS=ClostridiumintestinaleOX=36845GN=uvrCPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	613.822021484375	2	613.823078	1225.6316	1.9793	0.001215	-2.9046	-0.0017829	-0.92524	-0.00056793	613.8211310976798	83.462	8.351	83.462	82.264	90.615	0					423	201	4	0	0	0	0.31122	2	8795	8795;8940		45.972	0	1	13312000	+		20462	31682	16685	16708	22820;22821	22820					0.02781255717673048
IRFYRVYEL	9	Unmodified	_IRFYRVYEL_					0	0	0			REV__ENSG00000175283|ENST00000372586|DOLK	REV__ENSG00000175283|ENST00000372586|DOLK	MULTI-MSMS	OvCa9_classI_Rep4_	4	629.8504638671875	2	629.850773	1257.68699	-0.76346	-0.00048087	-2.1676	-0.0013653	-2.9311	-0.0018461	629.8490645395771	92.583	1.5683	90.068	89.595	91.163	-2.5147					91	31	4	0	0	0	0.51865	1	8073	8073		18.324	9.1415	1	1025100	+		20463	21888	16686	16709	22822	22822					0.06845669185395309
IRGEERQI	8	Unmodified	_IRGEERQI_					0	0	0			REV__nc|ENSG00000142459|Q96CN4|EVI5L	REV__nc|ENSG00000142459|Q96CN4|EVI5L	MULTI-SECPEP	OvCa9_classI_Rep3	3	501.3019104003906	2	500.780348	999.546142	-0.39109	-0.00019585	-4.4099	-0.0022084	-4.801	-0.0024042	500.77773444872065	103.28	2.0933	101.85	100.82	102.92	-1.4347					84	39	3	0	0	0	0.028476	1	7219	7219		63.306	3.188	1	220850	+		20464	19785	16687	16710	22823	22823					0.046350905319854974
IRGEFRSF	8	Unmodified	_IRGEFRSF_					0	0	0			REV__ENST00000579925.5_1_17:56568906-56569023:-|nuORF	REV__ENST00000579925.5_1_17:56568906-56569023:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	506.2732238769531	2	506.272158	1010.52976	1.7132	0.00086734	1.5295	0.00077434	3.2427	0.0016417	506.2727467608177	54.771	2.6321	51.6	50.779	53.411	-3.1715					173	88	3	0	0	0	0.74229	1	1507	1507		30.504	5.0535	1	154000	+		20465	27816	16688	16711	22824	22824					0.024920093659034137
IRGFQILEV	9	Unmodified	_IRGFQILEV_					0	0	0			REV__tr|A0A553SFC5|A0A553SFC5_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_08620PE=4SV=1	REV__tr|A0A553SFC5|A0A553SFC5_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_08620PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.86181640625	2	537.818941	1073.62333	2.0766	0.0011168	3.3168	0.0017838	5.3933	0.0029006	537.8205233921866	96.961	0.85248	96.961	96.501	97.353	0					31	19	2	0	0	0	0.027453	1	10612	10612		45.972	11.8	1	228480	+		20466	29562	16689	16712	22825	22825					0.08946308748318188
IRGIKGLIDK	10	Unmodified	_IRGIKGLIDK_					0	0	0		tr|A0A553SQ06|A0A553SQ06_NIACICsoRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_16420PE=4SV=1	tr|A0A553SQ06|A0A553SQ06_NIACICsoRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_16420PE=4SV=1	tr|A0A553SQ06|A0A553SQ06_NIACICsoRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_16420PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	557.3651123046875	2	556.861141	1111.70773	3.9624	0.0022065	-0.30895	-0.00017204	3.6534	0.0020345	556.8601625644726	88.226	1.0408	88.226	87.921	88.962	0					58	24	4	0	0	0	0.39172	2	9366	9366;9398		69.628	4.1622	1	4091900			20467	34101	16690	16713	22826;22827	22826					0.15634259565058528
IRGKKIAM	8	Unmodified	_IRGKKIAM_					0	0	0		tr|A0A553SUH0|A0A553SUH0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_07005PE=3SV=1	tr|A0A553SUH0|A0A553SUH0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_07005PE=3SV=1	tr|A0A553SUH0|A0A553SUH0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_07005PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	458.7879943847656	2	458.791672	915.568792	-3.9055	-0.0017918	-4.4688	-0.0020503	-8.3744	-0.0038421	458.7895332206503	147.83	2.1995	146.88	146.25	148.45	-0.9512					131	43	4	0	0	0	0.74679	1	12524	12524		28.254	7.7724	1	949810			20468	34608	16691	16714	22828	22828					0.10763018395914514
IRGNYLKRN	9	Unmodified	_IRGNYLKRN_					0	0	0			REV__tr|A0A7D7A214|A0A7D7A214_9CLOTClassISAM-dependentRNAmethyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14610PE=4SV=1	REV__tr|A0A7D7A214|A0A7D7A214_9CLOTClassISAM-dependentRNAmethyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14610PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3301391601562	2	567.330539	1132.64652	-2.3399	-0.0013275	0.99796	0.00056617	-1.3419	-0.00076131	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.69895	1	14757	14757		18.324	0	1	241060	+		20469	32518	16692	16715	22829	22829					0.0855074758567298
IRGSKLIIH	9	Unmodified	_IRGSKLIIH_					0	0	0			REV__KIF2B|p.Q430H|1|0.41|ENSG00000141200|chr17:53824323-53824323|G/C|missense_variant	REV__KIF2B|p.Q430H|1|0.41|ENSG00000141200|chr17:53824323-53824323|G/C|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	518.835693359375	2	518.834926	1035.6553	-0.81706	-0.00042392	0.18343	9.5171E-05	-0.63363	-0.00032875	518.8350378795717	55.666	1.9973	55.666	55.44	57.438	0					101	47	5	0	0	0	0.24951	1	4588	4588		68.787	2.9837	1	23922000	+		20470	28338	16693	16716	22830	22830					0.13889721222130902
IRGSLNKWPVL	11	Unmodified	_IRGSLNKWPVL_					0	0	0			REV__ENST00000375746.1_1_9:93607798-93607834:+|nuORF	REV__ENST00000375746.1_1_9:93607798-93607834:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8820190429688	2	641.885147	1281.75574	-5.3554	-0.0034376	1.3541	0.00086916	-4.0013	-0.0025684	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.70865	1	13269	13269		26.693	2.1737	1	804890	+		20471	25087	16694	16717	22831	22831					0.12613333485114708
IRGSSLRK	8	Unmodified	_IRGSSLRK_					0	0	0		ENST00000379719.7_1_11:9457912-9459353:+|nuORF	ENST00000379719.7_1_11:9457912-9459353:+|nuORF	ENST00000379719.7_1_11:9457912-9459353:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	458.7869567871094	2	458.787976	915.561398	-2.0925	-0.00096003	2.0092	0.00092177	-0.083388	-3.8258E-05	458.7887619770069	147.55	1.9467	147.32	146.82	148.77	-0.22697					104	38	4	0	0	0	0.74971	1	14951	14951		26.796	0	1	613710			20472	11131	16695	16718	22832	22832					0.10024002119860143
IRGVINQL	8	Unmodified	_IRGVINQL_					0	0	0		nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1;ENSG00000138036|ENST00000260605|DYNC2LI1;nc|ENSG00000138036|Q8TCX1-2|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1	nc|ENSG00000138036|Q8TCX1-3|DYNC2LI1	MULTI-MSMS	OvCa99_classI_Rep5	1	456.78717041015625	2	456.784902	911.55525	2.0226	0.0009239	0.26455	0.00012084	2.2872	0.0010447	456.7848693609175	77.663	0.71138	77.663	77.422	78.134	0					37	16	3	0	0	0	0.2826	1	7832	7832		110.34	24.978	1	2285800			20473	4650	16696	16719	22833	22833					0.09593483888306764
IRHEIPYKM	9	Unmodified	_IRHEIPYKM_					0	0	0			REV__ENST00000431775.1_1_20:1141365-1141542:+|nuORF	REV__ENST00000431775.1_1_20:1141365-1141542:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	593.8269653320312	2	593.823701	1185.63285	0.17269	0.00010255	1.9508	0.0011584	2.1235	0.001261	593.8247439826457	70.662	1.0198	70.662	70.369	71.389	0					48	25	4	0	0	0	0.53483	1	6786	6786		39.253	0	1	4093000	+		20474	25725	16697	16720	22834	22834					0.04745753762176719
IRHNKDRKV	9	Unmodified	_IRHNKDRKV_					0	0	0		ENST00000552705.5_1_19:49119841-49122400:-|nuORF;ENST00000552347.5_1_19:49120227-49122400:-|nuORF;ENSG00000063177|ENST00000549920|RPL18	ENST00000552705.5_1_19:49119841-49122400:-|nuORF	ENST00000552705.5_1_19:49119841-49122400:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	583.3493041992188	2	583.349263	1164.68397	-0.1459	-8.511E-05	-0.027495	-1.6039E-05	-0.17339	-0.00010115	583.3492881507101	20.95	1.1296	20.95	20.776	21.905	0					70	34	5	0	0	0	0.40667	2	86	86;102		51.335	15.703	1	2115900			20475	1286	16698	16721	22835;22836	22835					0.10821838851256871
IRHRESTP	8	Unmodified	_IRHRESTP_					0	0	0		ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	MULTI-MSMS	OvCa99_classI_Rep5	1	498.27935791015625	2	498.27269	994.530826	-0.44051	-0.00021949	4.2067	0.0020961	3.7662	0.0018766	498.27462461811365	61.847	0.91585	61.847	61.585	62.501	0					47	21	3	0	0	0	0.62934	1	5471	5471		57.811	3.035	1	4102900			20476	2043	16699	16722	22837	22837					0.03334223734805164
IRHRLVSN	8	Unmodified	_IRHRLVSN_					0	0	0			REV__tr|A0A553SRR8|A0A553SRR8_NIACIDUF4304domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01605PE=4SV=1	REV__tr|A0A553SRR8|A0A553SRR8_NIACIDUF4304domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01605PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.7886962890625	2	497.798875	993.583196	-0.73543	-0.0003661	2.6246	0.0013065	1.8892	0.00094044	497.80073552766606	69.341	0.29667	65.86	65.663	65.96	-3.4812					6	5	2	0	0	0	0.028476	1	5185	5185		30.504	0	1	8666.3	+		20477	30758	16700	16723	22838	22838					0.0861480686842242
IRHVFEKL	8	Unmodified	_IRHVFEKL_					0	0	0			REV__ENSG00000136546|ENST00000643258|SCN7A	REV__ENSG00000136546|ENST00000643258|SCN7A	MULTI-MSMS	OvCa99_classI_Rep5	1	521.3142700195312	2	521.313826	1040.6131	0.35733	0.00018628	-0.5219	-0.00027207	-0.16458	-8.5795E-05	521.3134639198273	151.32	0.90129	151.32	150.79	151.7	0					37	17	3	0	0	0	0.73494	1	17725	17725		34.173	2.2177	1	113400	+		20478	19393	16701	16724	22839	22839					0.09441745813751368
IRIALGKH	8	Unmodified	_IRIALGKH_					0	0	0			REV__tr|A0A553SHS1|A0A553SHS1_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_13495PE=4SV=1	REV__tr|A0A553SHS1|A0A553SHS1_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_13495PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	454.2969665527344	2	454.295436	906.57632	2.6813	0.0012181	0.053682	2.4388E-05	2.7349	0.0012425	454.29529475762115	75.958	0.68222	75.958	75.723	76.405	0					36	16	3	0	0	0	0.61758	1	7590	7590		60.294	2.4827	1	1440200	+		20479	29831	16702	16725	22840	22840					0.11929493987850037
IRIFQGCQF	9	Carbamidomethyl (C)	_IRIFQGC(Carbamidomethyl (C))QF_	IRIFQGC(1)QF		IRIFQGC(71)QF		0	1	0		ENSG00000132170|ENST00000651735|PPARG;nc|ENSG00000132170|P37231-2|PPARG;nc|ENSG00000132170|P37231|PPARG	ENSG00000132170|ENST00000651735|PPARG	ENSG00000132170|ENST00000651735|PPARG	MULTI-MSMS	OvCa99_classI_Rep5	1	584.8005981445312	2	584.800226	1167.5859	1.4513	0.00084872	-4.1275	-0.0024138	-2.6762	-0.0015651	584.7975416758661	135.53	1.1715	135.53	135.13	136.3	0					55	24	4	0	0	0	0.22961	1	15793	15793		71.296	7.0884	1	1892500			20480	4114	16703	16726	22841	22841	40				0.008808942110590579
IRILPGGRTL	10	Unmodified	_IRILPGGRTL_					0	0	0		ENSG00000143341|ENST00000271588|HMCN1;nc|ENSG00000143341|Q96RW7-2|HMCN1;HMCN1|p.T3358Sfs*4|1|0.06|ENSG00000143341|chr1:186093545-186093546|-/GT|frameshift_variant	ENSG00000143341|ENST00000271588|HMCN1	ENSG00000143341|ENST00000271588|HMCN1	MULTI-MSMS	OvCa9_classI_Rep2	2	548.3538818359375	2	548.353483	1094.69241	0.45545	0.00024975	-1.1823	-0.0006483	-0.72683	-0.00039856	548.3528407681815	96.64	1.7696	95.682	95.381	97.15	-0.95857					98	35	5	0	0	0	0.67931	1	8729	8729		32.812	1.2826	1	468860			20481	5038	16704	16727	22842	22842					0.14885392767905614
IRINRISE	8	Unmodified	_IRINRISE_					0	0	0		ENST00000436880.2_1_1:198868126-198868372:-|nuORF	ENST00000436880.2_1_1:198868126-198868372:-|nuORF	ENST00000436880.2_1_1:198868126-198868372:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.2723083496094	2	500.79854	999.582528	-0.0070264	-3.5188E-06	-1.3197	-0.00066093	-1.3268	-0.00066445	500.79780896616074	32.528	0.24785	32.528	32.403	32.651	0					7	4	2	0	0	0	0.028476	1	1416	1416		40.573	1.7665	1	30991			20482	11881	16705	16728	22843	22843					0.08271967428697735
IRIPKKAH	8	Unmodified	_IRIPKKAH_					0	0	0			REV__ENSG00000109458|ENST00000262994|GAB1	REV__ENSG00000109458|ENST00000262994|GAB1	MULTI-MSMS	OvCa99_classI_Rep5	1	481.8148193359375	2	481.816536	961.618519	0.63652	0.00030669	-4.3932	-0.0021167	-3.7567	-0.0018101	481.81479588639235	160.92	2.1046	160.92	159.66	161.77	0					71	41	3	0	0	0	0.74971	1	18840	18840		26.796	6.3143	1	146960	+		20483	17930	16706	16729	22844	22844					0.1361746939621753
IRIPLLSDL	9	Unmodified	_IRIPLLSDL_					0	0	0		ENSG00000123131|ENST00000379341|PRDX4	ENSG00000123131|ENST00000379341|PRDX4	ENSG00000123131|ENST00000379341|PRDX4	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.3297729492188	2	520.329142	1038.64373	-1.464	-0.00076178	0.94294	0.00049064	-0.52109	-0.00027114	520.329206560183	124.64	1.0438	123.25	122.97	124.01	-1.3908					35	19	3	0	0	0	0.28934	1	11817	11817		64.207	2.0999	1	68249			20484	3574	16707	16730	22845	22845					0.12595479408128085
IRIPLLSDL	9	Unmodified	_IRIPLLSDL_					0	0	0		ENSG00000123131|ENST00000379341|PRDX4	ENSG00000123131|ENST00000379341|PRDX4	ENSG00000123131|ENST00000379341|PRDX4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	520.329142	1038.64373	0.31531	0.00016406	-0.74845	-0.00038944	-0.43314	-0.00022538	520.3284877912708	123.22	0.83797	123	122.66	123.5	-0.21803	-0.13662	0.00036681	NaN	64.207	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58150			20485	3574	16707	16730							0.12595479408128085
IRIPLLSDL	9	Unmodified	_IRIPLLSDL_					0	0	0		ENSG00000123131|ENST00000379341|PRDX4	ENSG00000123131|ENST00000379341|PRDX4	ENSG00000123131|ENST00000379341|PRDX4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	520.329142	1038.64373	1.6245	0.00084525	-2.2391	-0.0011651	-0.61466	-0.00031983	520.3275769732128	124.19	1.1452	123.15	122.87	124.02	-1.0377	0.018572	-0.0011845	NaN	64.207	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61696			20486	3574	16707	16730							0.12595479408128085
IRIPVLYLS	9	Unmodified	_IRIPVLYLS_					0	0	0		ENSG00000143994|ENST00000316470|ABHD1	ENSG00000143994|ENST00000316470|ABHD1	ENSG00000143994|ENST00000316470|ABHD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.298583984375	2	537.33951	1072.66447	-0.74849	-0.00040219	-1.2902	-0.0006933	-2.0387	-0.0010955	537.3395568626183	61.818	0.37178	58.36	58.151	58.523	-3.4577					10	7	2	0	0	0	0.027462	1	4233	4233		30.504	1.3541	1	14361			20487	5115	16708	16731	22846	22846					0.13104069787800654
IRIQPPLL	8	Unmodified	_IRIQPPLL_					0	0	0			REV__ENST00000294360.4_1_1:53680060-53680234:-|nuORF	REV__ENST00000294360.4_1_1:53680060-53680234:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	475.3132629394531	2	475.313295	948.612037	0.3649	0.00017344	-0.66101	-0.00031419	-0.29611	-0.00014075	475.31289417376075	113.27	2.1231	113.15	112.82	114.94	-0.12174					75	42	4	0	0	0	0.56113	1	10788	10788		71.378	2.8932	1	307110	+		20488	24183	16709	16732	22847	22847					0.1356753144484628
IRIQSLVSSL	10	Unmodified	_IRIQSLVSSL_					0	0	0			REV__ENSG00000170852|ENST00000304056|KBTBD2	REV__ENSG00000170852|ENST00000304056|KBTBD2	MULTI-MSMS	OvCa99_classI_Rep5	1	558.3438720703125	2	558.342781	1114.67101	2.0488	0.0011439	-0.76811	-0.00042887	1.2807	0.00071507	558.3423686303381	111.05	2.7087	111.05	110.67	113.38	0					157	59	5	0	0	0	0.15355	1	12604	12604		101.46	4.7948	1	14357000	+		20489	21568	16710	16733	22848	22848					0.11825962948501001
IRIRVVQML	9	Unmodified	_IRIRVVQML_					0	0	0		PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant;PRKDC|p.P3973Afs*40|1|0.09|ENSG00000253729|chr8:47777811-47777812|-/C|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC;PRKDC|p.K2221Nfs*18|1|0.7|ENSG00000253729|chr8:47855320-47855320|T/-|frameshift_variant;PRKDC|p.E932Nfs*48|1|0.03|ENSG00000253729|chr8:47912550-47912550|C/-|frameshift_variant	PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant;PRKDC|p.E932Nfs*48|1|0.03|ENSG00000253729|chr8:47912550-47912550|C/-|frameshift_variant	PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	564.3593139648438	2	564.357711	1126.70087	2.9137	0.0016444	-0.42006	-0.00023706	2.4937	0.0014073	564.3573021153861	94.542	0.93961	94.542	94.264	95.204	0					55	21	4	0	0	0	0.27546	1	10301	10301		65.803	7.9919	1	3300300			20490	9437;15523	16711	16734	22849	22849					0.14258623412865745
IRIVSAILR	9	Unmodified	_IRIVSAILR_					0	0	0		nc|ENSG00000262085|Q8NH06|OR1P1	nc|ENSG00000262085|Q8NH06|OR1P1	nc|ENSG00000262085|Q8NH06|OR1P1	MULTI-MSMS	OvCa99_classI_Rep5	1	520.8523559570312	2	520.850576	1039.6866	2.2462	0.0011699	-0.11742	-6.1161E-05	2.1287	0.0011088	520.8503857428643	88.712	1.4718	88.712	88.044	89.516	0					72	35	4	0	0	0	0.16264	2	9462	9431;9462		82.75	8.7758	1	4713200			20491	15365	16712	16735	22850;22851	22851					0.16834294256204885
IRKAPLDDI	9	Unmodified	_IRKAPLDDI_					0	0	0		tr|A0A7D7A0E0|A0A7D7A0E0_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09585PE=4SV=1	tr|A0A7D7A0E0|A0A7D7A0E0_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09585PE=4SV=1	tr|A0A7D7A0E0|A0A7D7A0E0_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09585PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.8116455078125	2	520.808574	1039.60259	-1.3681	-0.00071254	0.72324	0.00037667	-0.6449	-0.00033587	520.8088352465354	118.21	1.5638	116.87	116.47	118.03	-1.3444					69	29	3	0	0	0	0.42676	1	11112	11112		49.442	1.5259	1	587660			20492	35993	16713	16736	22852	22852					0.08437718368645619
IRKCAIAIHTI	11	Unmodified	_IRKCAIAIHTI_					0	0	0			REV__tr|A0A553SHX7|A0A553SHX7_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_13815PE=4SV=1	REV__tr|A0A553SHX7|A0A553SHX7_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_13815PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8689575195312	2	619.873725	1237.7329	-3.8587	-0.0023919	-3.029	-0.0018776	-6.8877	-0.0042695	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.72466	1	15531	15531		19.997	1.7347	1	492670	+		20493	29851	16714	16737	22853	22853					0.12353991095983474
IRKEITKL	8	Unmodified	_IRKEITKL_					0	0	0			REV__tr|A0A553SKJ5|A0A553SKJ5_NIACIDUF2536familyproteinOS=NialliacirculansOX=1397GN=CEQ21_18745PE=4SV=1	REV__tr|A0A553SKJ5|A0A553SKJ5_NIACIDUF2536familyproteinOS=NialliacirculansOX=1397GN=CEQ21_18745PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	500.8280944824219	2	500.829309	999.644065	-0.88449	-0.00044298	0.10407	5.212E-05	-0.78042	-0.00039086	500.8292980614921	73.918	1.8817	71.946	71.587	73.469	-1.9711					81	35	4	0	0	0	0.21559	1	6047	6047		122.18	4.3649	1	955280	+		20494	30131	16715	16738	22854	22854					0.14422899127964683
IRKEYKEKLD	10	Unmodified	_IRKEYKEKLD_					0	0	0			REV__ENST00000487643.1_1_3:183240843-183262455:-|nuORF	REV__ENST00000487643.1_1_3:183240843-183262455:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	441.2537536621094	3	441.253993	1320.74015	1.4046	0.00061976	-0.43491	-0.00019191	0.96964	0.00042786	441.2537172485591	65.982	1.8287	63.036	62.554	64.383	-2.9459					68	35	4	0	0	0	0.69928	1	2701	2701		30.569	7.191	1	107960	+		20495	21713	16716	16739	22855	22855					0.09261002177413502
IRKGGASL	8	Unmodified	_IRKGGASL_					0	0	0			REV__tr|A0A553SKX5|A0A553SKX5_NIACIGeranyltranstransferaseOS=NialliacirculansOX=1397GN=CEQ21_19520PE=3SV=1	REV__tr|A0A553SKX5|A0A553SKX5_NIACIGeranyltranstransferaseOS=NialliacirculansOX=1397GN=CEQ21_19520PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	401.2506103515625	2	401.250695	800.486836	0.80892	0.00032458	-0.62432	-0.00025051	0.1846	7.4072E-05	401.2503345831936	33.849	0.5323	33.849	33.533	34.065	0					26	10	3	0	0	0	0.57878	1	1580	1580		68.485	5.5063	1	1341300	+		20496	30162	16717	16740	22856	22856					0.07861239308465429
IRKNADELK	9	Unmodified	_IRKNADELK_					0	0	0			REV__tr|A0A553STJ6|A0A553STJ6_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04990PE=4SV=1	REV__tr|A0A553STJ6|A0A553STJ6_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04990PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	543.8189086914062	2	543.81693	1085.61931	0.13741	7.4726E-05	-0.61636	-0.00033519	-0.47895	-0.00026046	543.8164952941203	57.589	0.67476	57.589	57.309	57.984	0					40	15	4	0	0	0	0.18193	1	4836	4836		79.451	0	1	2161900	+		20497	30974	16718	16741	22857	22857					0.07992219254583688
IRKNSLLDH	9	Unmodified	_IRKNSLLDH_					0	0	0		nc|ENSG00000237456|Q14602|ID2B	nc|ENSG00000237456|Q14602|ID2B	nc|ENSG00000237456|Q14602|ID2B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.3118286132812	2	548.317097	1094.61964	-0.83412	-0.00045736	-0.53455	-0.0002931	-1.3687	-0.00075047	548.3167635870484	40.333	0.82602	37.379	36.963	37.789	-2.9541					19	15	2	0	0	0	0.027462	1	1684	1684		44.117	8.4985	1	16516			20498	15334	16719	16742	22858	22858					0.07611638974458401
IRKPKEILS	9	Unmodified	_IRKPKEILS_					0	0	0			REV__tr|A0A553SRM7|A0A553SRM7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01435PE=4SV=1	REV__tr|A0A553SRM7|A0A553SRM7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01435PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.780517578125	2	542.347866	1082.68118	0.010742	5.8261E-06	-0.92764	-0.0005031	-0.9169	-0.00049728	542.3472611739547	102.86	0.46951	101.34	101.1	101.57	-1.5211					13	8	2	0	0	0	0.027411	1	7102	7102		54.776	8.8041	1	17042	+		20499	30749	16720	16743	22859	22859					0.14314570673764138
IRKPKEILS	9	Unmodified	_IRKPKEILS_					0	0	0			REV__tr|A0A553SRM7|A0A553SRM7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01435PE=4SV=1	REV__tr|A0A553SRM7|A0A553SRM7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01435PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	542.347866	1082.68118	2.8106	0.0015243	-0.70861	-0.00038431	2.102	0.00114	542.347280096831	100.84	0.45771	100.84	100.65	101.11	0	-0.24581	-0.00058484	NaN	54.776	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	421780	+		20500	30749	16720	16743							0.14314570673764138
IRKPLIRGE	9	Unmodified	_IRKPLIRGE_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.346435546875	2	541.345658	1080.67676	-0.94096	-0.00050939	-0.28271	-0.00015304	-1.2237	-0.00066243	541.3456613983815	82.909	2.3512	80.226	79.684	82.036	-2.683					196	48	7	0	0	0	0.5811	1	6914	6914		34.173	1.3601	1	3004400	+		20501	21918	16721	16744	22860	22860					0.13965106250861936
IRKRVHSF	8	Unmodified	_IRKRVHSF_					0	0	0			REV__tr|A0A7D6W168|A0A7D6W168_9CLOTFtsW/RodA/SpoVEfamilycellcycleproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02600PE=4SV=1	REV__tr|A0A7D6W168|A0A7D6W168_9CLOTFtsW/RodA/SpoVEfamilycellcycleproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02600PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.8174438476562	2	521.817067	1041.61958	-0.25137	-0.00013117	2.1182	0.0011053	1.8668	0.00097413	521.8179602495195	115.97	1.817	114.61	113.95	115.77	-1.3645					90	35	4	0	0	0	0.68714	1	10814	10814		45.952	3.4775	1	369120	+		20502	31878	16722	16745	22861	22861					0.1004368376511593
IRLDKKLSV	9	Unmodified	_IRLDKKLSV_					0	0	0		TTC12|p.L695Afs*10|1|0.03|ENSG00000149292|chr11:113366264-113366265|-/G|frameshift_variant;ENSG00000149292|ENST00000529221|TTC12;nc|ENSG00000149292|Q9H892-2|TTC12	TTC12|p.L695Afs*10|1|0.03|ENSG00000149292|chr11:113366264-113366265|-/G|frameshift_variant	TTC12|p.L695Afs*10|1|0.03|ENSG00000149292|chr11:113366264-113366265|-/G|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3087158203125	2	536.347866	1070.68118	-0.4415	-0.0002368	0.37645	0.00020191	-0.065051	-3.489E-05	536.3476672208292	33.657	0.19556	33.657	33.533	33.728	0					5	3	2	0	0	0	0.027462	1	1571	1571		27.882	11.409	1	14768			20503	5451	16723	16746	22862	22862					0.14866570673734714
IRLFFGTKGNL	11	Unmodified	_IRLFFGTKGNL_					0	0	0		nc|ENSG00000187049|Q9P0N5-2|TMEM216;TMEM216|p.A118Dfs*25|1|0.04|ENSG00000187049|chr11:61397896-61397897|-/ATACACGTCATTCTCTAATAAT|frameshift_variant;ENSG00000187049|ENST00000515837|TMEM216;nc|ENSG00000187049|Q9P0N5-3|TMEM216	nc|ENSG00000187049|Q9P0N5-2|TMEM216	nc|ENSG00000187049|Q9P0N5-2|TMEM216	MSMS	OvCa9_classI_Rep4_	4	633.371337890625	2	633.371872	1264.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	155.47	1	153.98	153.48	154.48	-1.4911								0	0	0	0.19474	1	15396	15396		19.104	3.4617	1				20504	8384	16724	16747	22863	22863					0.10741644593827004
IRLHQTLN	8	Unmodified	_IRLHQTLN_					0	0	0			REV__nc|ENSG00000186446|Q96CX3-2|ZNF501	REV__nc|ENSG00000186446|Q96CX3-2|ZNF501	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.8286437988281	2	497.793258	993.571963	1.3752	0.00068457	-2.7666	-0.0013772	-1.3914	-0.00069261	497.79194983469034	147.6	2.1036	147.6	147.21	149.31	0					67	42	2	0	0	0	0.028476	1	17361	17361		45.952	13.997	1	86341	+		20505	22585	16725	16748	22864	22864					0.0749198477428763
IRLKAASGI	9	Unmodified	_IRLKAASGI_					0	0	0		HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|41|2|sense	HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|41|2|sense	HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|41|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.773681640625	2	464.800552	927.58655	-0.54805	-0.00025474	0.39725	0.00018464	-0.15081	-7.0095E-05	464.80070408940196	53.283	0.34444	53.283	53.131	53.475	0					13	7	2	0	0	0	0.027461	1	4222	4222		32.812	10.853	1	358070			20506	14476	16726	16749	22865	22865					0.11986056922410171
IRLRRCKWRIW	11	Unmodified	_IRLRRCKWRIW_					0	0	0			REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1	REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.2911987304688	3	529.317268	1584.92997	-1.0848	-0.00057422	3.4927	0.0018487	2.4079	0.0012745	529.3181466979338	36.875	0.40182	36.875	36.575	36.977	0					10	8	2	0	0	0	0.026435	1	1984	1984		6.001	0	1	70143	+		20507	16132	16727	16750	22866	22866					0.16090635429441136
IRLRRMSQWER	11	Unmodified	_IRLRRMSQWER_					0	0	0			REV__chr2:47385210-47386542|145|23.43|0.6|5.29|+|1|EPCAM,None|1	REV__chr2:47385210-47386542|145|23.43|0.6|5.29|+|1|EPCAM,None|1	MULTI-MSMS	OvCa9_classI_Rep2	2	510.9541931152344	3	510.952654	1529.83613	-0.81742	-0.00041766	4.2045	0.0021483	3.3871	0.0017306	510.9548519015184	48.416	2.2317	45.656	44.835	47.067	-2.7603					140	44	5	0	0	0	0.72506	1	3023	3023		14.779	5.1327	1	1255300	+		20508	16004	16728	16751	22867	22867					0.09240871536508166
IRLSVLDES	9	Unmodified	_IRLSVLDES_					0	0	0			REV__ENST00000222690.10_1_7:44869386-44869509:-|nuORF	REV__ENST00000222690.10_1_7:44869386-44869509:-|nuORF	MSMS	OvCa99_classI_Rep5	1	516.2919921875	2	516.290214	1030.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.38	1	148.38	147.88	148.88	0								0	0	0	0.17442	1	17367	17367		42.396	1.618	1		+		20509	23752	16729	16752	22868	22868					0.051814217520814054
IRLTLVFPV	9	Unmodified	_IRLTLVFPV_					0	0	0			REV__ENSG00000135220|ENST00000251566|UGT2A3	REV__ENSG00000135220|ENST00000251566|UGT2A3	MULTI-MSMS	OvCa9_classI_Rep2	2	529.3414916992188	2	529.342052	1056.66955	-1.2903	-0.00068304	1.8378	0.0009728	0.54741	0.00028977	529.342852686274	137.98	1.4177	137.76	137.44	138.86	-0.22696					43	28	2	0	0	0	0.5811	1	13739	13739		34.173	5.023	1	35179	+		20510	19266	16730	16753	22869	22869					0.14348373650409485
IRLTLVFPV	9	Unmodified	_IRLTLVFPV_					0	0	0			REV__ENSG00000135220|ENST00000251566|UGT2A3	REV__ENSG00000135220|ENST00000251566|UGT2A3	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.3436279296875	2	529.342052	1056.66955	0.34687	0.00018361	0.074595	3.9486E-05	0.42147	0.0002231	529.3419281598773	139.64	1.5853	138.15	137.78	139.37	-1.4952					72	30	3	0	0	0	0.62352	2	13629	13617;13629		29.15	1.2673	1	57433	+		20511	19266	16730	16753	22870;22871	22871					0.14348373650409485
IRLVCKGCS	9	2 Carbamidomethyl (C)	_IRLVC(Carbamidomethyl (C))KGC(Carbamidomethyl (C))S_	IRLVC(1)KGC(1)S		IRLVC(61)KGC(61)S		0	2	0			REV__SRD5A3|p.L112_R113insSCGKCVL|1|0.12|ENSG00000128039|chr4:55359460-55359461|-/AGTTGTGGGAAGTGTGTCTTA|inframe_insertion	REV__SRD5A3|p.L112_R113insSCGKCVL|1|0.12|ENSG00000128039|chr4:55359460-55359461|-/AGTTGTGGGAAGTGTGTCTTA|inframe_insertion	MULTI-MSMS	OvCa99_classI_Rep5	1	546.7890014648438	2	546.786261	1091.55797	0.93582	0.0005117	3.6267	0.001983	4.5625	0.0024947	546.7881225030743	155.8	2.8358	155.8	155.12	157.96	0					140	55	3	0	0	0	0.31747	1	18332	18332		60.972	6.1956	1	297140	+		20512	29451	16731	16754	22872	22872	360;361				0.01585247959337721
IRLVGRVLV	9	Unmodified	_IRLVGRVLV_					0	0	0			REV__ENST00000480999.1_1_6:30152426-30152909:-|nuORF	REV__ENST00000480999.1_1_6:30152426-30152909:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.8323364257812	2	512.853119	1023.69168	1.9769	0.0010138	-0.1947	-9.9854E-05	1.7822	0.00091398	512.8529609092361	110.4	0.53857	110.4	110.09	110.63	0					23	11	3	0	0	0	0.027462	1	12505	12505		31.955	14.59	1	301060	+		20513	26472	16732	16755	22873	22873					0.18078598118847822
IRLYCFIVI	9	Unmodified	_IRLYCFIVI_					0	0	0			REV__ENSG00000168412|ENST00000307161|MTNR1A	REV__ENSG00000168412|ENST00000307161|MTNR1A	MULTI-MSMS	OvCa99_classI_Rep5	1	570.3355712890625	2	570.335913	1138.65727	1.4863	0.0008477	-1.1626	-0.00066308	0.32371	0.00018462	570.3361063755723	78.922	0.68589	78.922	78.625	79.311	0					23	16	2	0	0	0	0.22913	1	8024	8024		71.378	5.9125	1	1023800	+		20514	21373	16733	16756	22874	22874					0.09349013915721116
IRMHDGIL	8	Unmodified	_IRMHDGIL_					0	0	0		L1PA15_dup4761|chrX:56137796-56140776:+|1.2704796762244717|0.2808252408673861|2.18|428.0|65|2|sense	L1PA15_dup4761|chrX:56137796-56140776:+|1.2704796762244717|0.2808252408673861|2.18|428.0|65|2|sense	L1PA15_dup4761|chrX:56137796-56140776:+|1.2704796762244717|0.2808252408673861|2.18|428.0|65|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	476.8058776855469	2	477.763112	953.511671	-0.47183	-0.00022542	-2.3731	-0.0011338	-2.845	-0.0013592	477.76177851668604	43.414	0.38062	43.414	43.227	43.608	0					13	8	2	0	0	0	0.028476	1	2840	2840		62.978	2.6845	1	85834			20515	14666	16734	16757	22875	22875					0.03305551119535721
IRMIIVVDQ	9	Unmodified	_IRMIIVVDQ_					0	0	0			REV__ENSG00000153294|ENST00000283303|ADGRF4	REV__ENSG00000153294|ENST00000283303|ADGRF4	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8388671875	2	543.820627	1085.6267	2.493	0.0013558	-0.45667	-0.00024835	2.0364	0.0011074	543.8199300423503	75.489	1.9585	75.489	75.168	77.126	0					116	48	4	0	0	0	0.027455	1	7582	7582		51.335	0	1	14707000	+		20516	20337	16735	16758	22876	22876					0.08731235530694903
IRMIRRKN	8	Unmodified	_IRMIRRKN_					0	0	0			REV__ENST00000498447.5_1_8:42403781-42407748:+|nuORF	REV__ENST00000498447.5_1_8:42403781-42407748:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	543.8388671875	2	543.837477	1085.6604	2.4203	0.0013163	-4.3695	-0.0023763	-1.9492	-0.0010601	543.83497599108	75.929	0.95558	75.929	75.723	76.678	0					44	23	3	0	0	0	0.62934	1	7582	7582		57.811	4.4598	1	4610600	+		20517	21940	16736	16759	22877	22877					0.12099701813099273
IRMIRRKN	8	Unmodified	_IRMIRRKN_					0	0	0			REV__ENST00000498447.5_1_8:42403781-42407748:+|nuORF	REV__ENST00000498447.5_1_8:42403781-42407748:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	543.837477	1085.6604	2.4203	0.0013163	-4.3695	-0.0023763	-1.9492	-0.0010601	543.83497599108	75.929	0.95558	75.929	75.723	76.678	0	0	0	NaN	57.811	44	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4610600	+		20518	21940	16736	16759							0.12099701813099273
IRNASKAKE	9	Unmodified	_IRNASKAKE_					0	0	0			REV__tr|A0A7D6ZHJ0|A0A7D6ZHJ0_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03175PE=3SV=1	REV__tr|A0A7D6ZHJ0|A0A7D6ZHJ0_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03175PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.79534912109375	2	508.795998	1015.57744	-0.43554	-0.0002216	0.027197	1.3838E-05	-0.40834	-0.00020776	508.79583314944	39.296	0.52621	39.296	39.063	39.589	0					23	11	3	0	0	0	0.51865	1	2305	2305		40.778	1.972	1	485410	+		20519	32027	16737	16760	22878	22878					0.07027663566088904
IRNGSERVV	9	Unmodified	_IRNGSERVV_					0	0	0		ENSG00000113282|ENST00000411809|CLINT1;nc|ENSG00000113282|Q14677-2|CLINT1;nc|ENSG00000113282|Q14677-3|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	ENSG00000113282|ENST00000411809|CLINT1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.2940673828125	2	515.293622	1028.57269	-1.0025	-0.00051658	-0.04233	-2.1812E-05	-1.0448	-0.00053839	515.2934745123906	34.089	1.4798	34.089	33.384	34.864	0					53	30	4	0	0	0	0.38969	1	1619	1619		52.937	1.6012	1	971360			20520	2960	16738	16761	22879	22879					0.05954779423313994
IRNILLHQL	9	Unmodified	_IRNILLHQL_					0	0	0		ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728|OAS2	ENSG00000111335|ENST00000392583|OAS2	ENSG00000111335|ENST00000392583|OAS2	MULTI-MSMS	OvCa99_classI_Rep5	1	560.35546875	2	560.353483	1118.69241	2.1539	0.0012069	0.10156	5.6908E-05	2.2554	0.0012638	560.3534065483874	83.676	0.88382	83.676	83.419	84.303	0					44	20	4	0	0	0	0.24951	1	8708	8708		68.787	4.5796	1	1797400			20521	2823	16739	16762	22880	22880					0.1378139276789625
IRNKLLISF	9	Unmodified	_IRNKLLISF_					0	0	0		tr|A0A7D6VYC6|A0A7D6VYC6_9CLOTHistidineproteinkinaseSaeSOS=ClostridiumintestinaleOX=36845GN=HZF06_16280PE=4SV=1	tr|A0A7D6VYC6|A0A7D6VYC6_9CLOTHistidineproteinkinaseSaeSOS=ClostridiumintestinaleOX=36845GN=HZF06_16280PE=4SV=1	tr|A0A7D6VYC6|A0A7D6VYC6_9CLOTHistidineproteinkinaseSaeSOS=ClostridiumintestinaleOX=36845GN=HZF06_16280PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.3509521484375	2	552.350409	1102.68626	-0.18484	-0.0001021	-0.059877	-3.3073E-05	-0.24472	-0.00013517	552.350232386143	90.822	2.09	88.247	87.75	89.84	-2.575					100	40	4	0	0	0	0.42676	1	7846	7846		49.442	1.7842	1	320710			20522	35326	16740	16763	22881	22881					0.13902874536347554
IRNPGVQHF	9	Unmodified	_IRNPGVQHF_					0	0	0		ENSG00000145685|ENST00000380345|LHFPL2	ENSG00000145685|ENST00000380345|LHFPL2	ENSG00000145685|ENST00000380345|LHFPL2	MULTI-MSMS	OvCa99_classI_Rep5	1	534.2926635742188	2	534.290882	1066.56721	-0.2574	-0.00013753	-0.67218	-0.00035914	-0.92958	-0.00049667	534.290547613377	51.472	1.2312	51.472	50.64	51.871	0					72	28	4	0	0	0	0.12365	1	3986	3986		90.777	21.99	1	2278600			20523	5236	16741	16764	22882	22882					0.03659100631512047
IRNQRRYRQRR	11	Unmodified	_IRNQRRYRQRR_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;UNC45A-IQGAP1|2|fusion;UNC45A-IQGAP1|1|fusion	ENSG00000140575|ENST00000268182|IQGAP1;UNC45A-IQGAP1|2|fusion	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.7789916992188	3	534.648845	1600.92471	0.4826	0.00025802	0.21548	0.00011521	0.69808	0.00037323	534.6482903802022	72.033	0.20905	72.033	71.916	72.125	0					6	4	2	0	0	0	0.026435	1	7006	7006		9.6461	0	1	126270			20524	4862;36292	16742	16765	22883	22883					0.14828047891182905
IRNSAELAQ	9	Unmodified	_IRNSAELAQ_					0	0	0			REV__ENSG00000096696|ENST00000379802|DSP	REV__ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OvCa99_classI_Rep5	1	501.2723083496094	2	501.272355	1000.53016	-0.00056989	-2.8567E-07	-0.48352	-0.00024238	-0.48409	-0.00024266	501.27192553814194	32.475	0.6881	32.475	32.204	32.892	0					27	13	3	0	0	0	0.42676	1	1416	1416		49.442	1.5259	1	373630	+		20525	17308	16743	16766	22884	22884					0.029913842950804792
IRNSAELAQ	9	Unmodified	_IRNSAELAQ_					0	0	0			REV__ENSG00000096696|ENST00000379802|DSP	REV__ENSG00000096696|ENST00000379802|DSP	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	501.272355	1000.53016	-0.00056989	-2.8567E-07	-0.48352	-0.00024238	-0.48409	-0.00024266	501.27192553814194	32.475	0.6881	32.475	32.204	32.892	0	0	0	NaN	49.442	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	373630	+		20526	17308	16743	16766							0.029913842950804792
IRNSQTRKI	9	Unmodified	_IRNSQTRKI_					0	0	0		nc|ENSG00000184979|Q9UMW8-2|USP18;ENSG00000184979|ENST00000215794|USP18	nc|ENSG00000184979|Q9UMW8-2|USP18	nc|ENSG00000184979|Q9UMW8-2|USP18	MULTI-MSMS	OvCa99_classI_Rep5	1	558.33544921875	2	558.335821	1114.65709	-0.54663	-0.0003052	-1.6724	-0.00093378	-2.2191	-0.001239	558.3343260363099	27.216	0.54863	27.216	27.043	27.591	0					26	10	4	0	0	0	0.2422	1	779	779		69.628	9.3337	1	570040			20527	8208	16744	16767	22885	22885					0.1043473024008108
IRPDSRALI	9	Unmodified	_IRPDSRALI_					0	0	0			REV__ENST00000427259.1_1_9:98632604-98637316:-|nuORF	REV__ENST00000427259.1_1_9:98632604-98637316:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	520.8154296875	2	520.81419	1039.61383	-1.1973	-0.00062355	1.2275	0.0006393	0.030245	1.5752E-05	520.814708541224	66.269	0.71745	66.269	66.022	66.739	0					27	17	2	0	0	0	0.38529	1	6128	6128		53.351	7.3995	1	2604000	+		20528	25678	16745	16768	22886	22886					0.09560540462803147
IRPEHVLRL	9	Unmodified	_IRPEHVLRL_					0	0	0		ENSG00000175970|ENST00000344651|UNC119B;UNC119B|p.D133Ffs*42|1|0.12|ENSG00000175970|chr12:120716664-120716665|-/TTTCA|frameshift_variant;ENST00000539658.1_1_12:121148334-121149523:+|nuORF	ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	MULTI-MSMS	OvCa99_classI_Rep5	1	566.8535766601562	2	566.851107	1131.68766	0.11814	6.697E-05	-0.41838	-0.00023716	-0.30023	-0.00017019	566.8507126066565	62.098	0.67476	62.098	61.826	62.501	0					34	15	3	0	0	0	0.35694	1	5514	5514		56.434	6.9922	1	1522800			20529	7574	16746	16769	22887	22887					0.1270850862510997
IRPGTAFEL	9	Unmodified	_IRPGTAFEL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	OvCa9_classI_Rep2	2	502.281494140625	2	502.282192	1002.54983	-0.91373	-0.00045895	0.5123	0.00025732	-0.40143	-0.00020163	502.2823787976924	94.031	2.3002	92.931	92.592	94.892	-1.0995					89	45	5	0	0	0	0.1149	1	8409	8409		93.143	21.848	1	1036800			20530	7740	16747	16770	22888	22888					0.0486576030583592
IRPGTAFEL	9	Unmodified	_IRPGTAFEL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	OvCa9_classI_Rep3	3	502.2831726074219	2	502.282192	1002.54983	-0.90353	-0.00045383	0.66361	0.00033332	-0.23992	-0.00012051	502.28234158523946	94.835	2.2552	92.939	92.662	94.917	-1.8956					108	44	3	0	0	0	0.13504	1	6175	6175		87.696	5.4559	1	1463600			20531	7740	16747	16770	22889	22889					0.0486576030583592
IRPLSLYLLPG	11	Unmodified	_IRPLSLYLLPG_					0	0	0		ENST00000515415.5_1_5:57755119-57755311:-|nuORF	ENST00000515415.5_1_5:57755119-57755311:-|nuORF	ENST00000515415.5_1_5:57755119-57755311:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	621.38330078125	2	621.384448	1240.75434	0.63091	0.00039204	-2.7504	-0.001709	-2.1195	-0.001317	621.3825974566482	32.776	1.7235	30.08	29.569	31.293	-2.6954					81	36	3	0	0	0	0.72483	1	815	815		19.997	10.814	1	73112			20532	13045	16748	16771	22890	22890					0.14359699396345604
IRPNIILVL	9	Unmodified	_IRPNIILVL_					0	0	0		ENSG00000137573|ENST00000402687|SULF1;SULF1|p.R637Ifs*19|1|0.12|ENSG00000137573|chr8:69627266-69627281|CCAGAGCGTGGAAGGA/-|frameshift_variant;ENST00000463221.2_1_20:46318868-46386107:-|nuORF;SULF1-RPS29|2|fusion;SULF1-RPS29|1|fusion;nc|ENSG00000196562|Q8IWU5-2|SULF2;ENSG00000196562|ENST00000688720|SULF2;SULF2|p.G580Rfs*23|1|0.15|ENSG00000196562|chr20:47666328-47666329|-/CCATCCTT|frameshift_variant;SULF2|p.H651Tfs*2|1|0.06|ENSG00000196562|chr20:47665246-47665246|A/-|frameshift_variant	ENSG00000137573|ENST00000402687|SULF1;nc|ENSG00000196562|Q8IWU5-2|SULF2	ENSG00000137573|ENST00000402687|SULF1	MULTI-MSMS	OvCa99_classI_Rep5	1	525.8563842773438	2	525.855327	1049.6961	1.3326	0.00070078	0.55249	0.00029053	1.8851	0.0009913	525.8555111735291	127.1	1.4503	127.1	126.69	128.14	0					83	31	4	0	0	0	0.48324	1	14683	14683		44.117	1.7207	1	4632300			20533	4599;8626	16749	16772	22891	22891					0.17324062541752028
IRPNIILVL	9	Unmodified	_IRPNIILVL_					0	0	0		ENSG00000137573|ENST00000402687|SULF1;SULF1|p.R637Ifs*19|1|0.12|ENSG00000137573|chr8:69627266-69627281|CCAGAGCGTGGAAGGA/-|frameshift_variant;ENST00000463221.2_1_20:46318868-46386107:-|nuORF;SULF1-RPS29|2|fusion;SULF1-RPS29|1|fusion;nc|ENSG00000196562|Q8IWU5-2|SULF2;ENSG00000196562|ENST00000688720|SULF2;SULF2|p.G580Rfs*23|1|0.15|ENSG00000196562|chr20:47666328-47666329|-/CCATCCTT|frameshift_variant;SULF2|p.H651Tfs*2|1|0.06|ENSG00000196562|chr20:47665246-47665246|A/-|frameshift_variant	ENSG00000137573|ENST00000402687|SULF1;nc|ENSG00000196562|Q8IWU5-2|SULF2	ENSG00000137573|ENST00000402687|SULF1	MULTI-MSMS	OvCa9_classI_Rep2	2	525.8544921875	2	525.855327	1049.6961	0.76961	0.00040471	-1.024	-0.0005385	-0.25443	-0.0001338	525.8546110101726	126.86	1.8772	126.62	126.29	128.17	-0.2359					94	37	4	0	0	0	0.46377	1	12396	12396		45.952	1.8352	1	231030			20534	4599;8626	16749	16772	22892	22892					0.17324062541752028
IRPNIILVL	9	Unmodified	_IRPNIILVL_					0	0	0		ENSG00000137573|ENST00000402687|SULF1;SULF1|p.R637Ifs*19|1|0.12|ENSG00000137573|chr8:69627266-69627281|CCAGAGCGTGGAAGGA/-|frameshift_variant;ENST00000463221.2_1_20:46318868-46386107:-|nuORF;SULF1-RPS29|2|fusion;SULF1-RPS29|1|fusion;nc|ENSG00000196562|Q8IWU5-2|SULF2;ENSG00000196562|ENST00000688720|SULF2;SULF2|p.G580Rfs*23|1|0.15|ENSG00000196562|chr20:47666328-47666329|-/CCATCCTT|frameshift_variant;SULF2|p.H651Tfs*2|1|0.06|ENSG00000196562|chr20:47665246-47665246|A/-|frameshift_variant	ENSG00000137573|ENST00000402687|SULF1;nc|ENSG00000196562|Q8IWU5-2|SULF2	ENSG00000137573|ENST00000402687|SULF1	MULTI-MSMS	OvCa9_classI_Rep3	3	525.8543701171875	2	525.855327	1049.6961	0.33138	0.00017426	-0.66182	-0.00034802	-0.33044	-0.00017376	525.85482904703	128.29	1.7807	127.2	126.73	128.51	-1.0933					95	35	4	0	0	0	0.46377	1	10091	10091		45.952	5.3793	1	248690			20535	4599;8626	16749	16772	22893	22893					0.17324062541752028
IRPNIILVL	9	Unmodified	_IRPNIILVL_					0	0	0		ENSG00000137573|ENST00000402687|SULF1;SULF1|p.R637Ifs*19|1|0.12|ENSG00000137573|chr8:69627266-69627281|CCAGAGCGTGGAAGGA/-|frameshift_variant;ENST00000463221.2_1_20:46318868-46386107:-|nuORF;SULF1-RPS29|2|fusion;SULF1-RPS29|1|fusion;nc|ENSG00000196562|Q8IWU5-2|SULF2;ENSG00000196562|ENST00000688720|SULF2;SULF2|p.G580Rfs*23|1|0.15|ENSG00000196562|chr20:47666328-47666329|-/CCATCCTT|frameshift_variant;SULF2|p.H651Tfs*2|1|0.06|ENSG00000196562|chr20:47665246-47665246|A/-|frameshift_variant	ENSG00000137573|ENST00000402687|SULF1;nc|ENSG00000196562|Q8IWU5-2|SULF2	ENSG00000137573|ENST00000402687|SULF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.8555908203125	2	525.855327	1049.6961	-0.17376	-9.1372E-05	-0.049096	-2.5818E-05	-0.22285	-0.00011719	525.8551418394103	128.56	1.8468	127.1	126.69	128.53	-1.4565					98	36	4	0	0	0	0.55588	1	12305	12305		37.159	6.6555	1	322380			20536	4599;8626	16749	16772	22894	22894					0.17324062541752028
IRPNYIDIY	9	Unmodified	_IRPNYIDIY_					0	0	0		nc|ENSG00000140479|P29122-6|PCSK6;nc|ENSG00000140479|P29122-5|PCSK6;nc|ENSG00000140479|P29122-4|PCSK6;nc|ENSG00000140479|P29122-2|PCSK6;nc|ENSG00000140479|P29122-8|PCSK6;ENSG00000140479|ENST00000611716|PCSK6;nc|ENSG00000140479|P29122-7|PCSK6;nc|ENSG00000140479|P29122-3|PCSK6	nc|ENSG00000140479|P29122-6|PCSK6	nc|ENSG00000140479|P29122-6|PCSK6	MULTI-MSMS	OvCa9_classI_Rep4_	4	583.8135375976562	2	583.813856	1165.61316	-1.528	-0.00089207	1.0882	0.00063528	-0.43984	-0.00025679	583.814494189575	99.585	1.5925	97.259	96.899	98.491	-2.3253					65	30	4	0	0	0	0.38969	1	8885	8885		52.937	4.9772	1	215040			20537	4847	16750	16773	22895	22895					0.03697701023111222
IRPNYIDIY	9	Unmodified	_IRPNYIDIY_					0	0	0		nc|ENSG00000140479|P29122-6|PCSK6;nc|ENSG00000140479|P29122-5|PCSK6;nc|ENSG00000140479|P29122-4|PCSK6;nc|ENSG00000140479|P29122-2|PCSK6;nc|ENSG00000140479|P29122-8|PCSK6;ENSG00000140479|ENST00000611716|PCSK6;nc|ENSG00000140479|P29122-7|PCSK6;nc|ENSG00000140479|P29122-3|PCSK6	nc|ENSG00000140479|P29122-6|PCSK6	nc|ENSG00000140479|P29122-6|PCSK6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	583.813856	1165.61316	-0.44224	-0.00025819	-0.16201	-9.4581E-05	-0.60425	-0.00035277	583.8136541135863	98.129	1.381	97.236	96.924	98.305	-0.89306	-0.056164	-0.0010207	NaN	52.937	66	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185470			20538	4847	16750	16773							0.03697701023111222
IRPNYIDIY	9	Unmodified	_IRPNYIDIY_					0	0	0		nc|ENSG00000140479|P29122-6|PCSK6;nc|ENSG00000140479|P29122-5|PCSK6;nc|ENSG00000140479|P29122-4|PCSK6;nc|ENSG00000140479|P29122-2|PCSK6;nc|ENSG00000140479|P29122-8|PCSK6;ENSG00000140479|ENST00000611716|PCSK6;nc|ENSG00000140479|P29122-7|PCSK6;nc|ENSG00000140479|P29122-3|PCSK6	nc|ENSG00000140479|P29122-6|PCSK6	nc|ENSG00000140479|P29122-6|PCSK6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	583.813856	1165.61316	-1.4635	-0.00085443	1.174	0.00068541	-0.28951	-0.00016902	583.8144784365714	99.066	1.3959	97.381	96.852	98.248	-1.685	0.088786	0.00053925	NaN	52.937	60	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246050			20539	4847	16750	16773							0.03697701023111222
IRPSALTLD	9	Unmodified	_IRPSALTLD_					0	0	0		nc|ENSG00000021645|Q9Y4C0-4|NRXN3;ENSG00000021645|ENST00000335750|NRXN3;nc|ENSG00000021645|Q9Y4C0|NRXN3	nc|ENSG00000021645|Q9Y4C0-4|NRXN3	nc|ENSG00000021645|Q9Y4C0-4|NRXN3	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.250732421875	2	493.287474	984.560395	-0.90734	-0.00044758	-2.5503	-0.0012581	-3.4577	-0.0017056	493.2888208683042	36.352	0.72359	36.352	35.939	36.662	0					35	15	4	0	0	0	0.027462	1	1892	1892		31.53	4.7337	1	251080			20540	1027	16751	16774	22896	22896					0.06749742960278127
IRPSMASEEL	10	Unmodified	_IRPSMASEEL_					0	0	0		ENSG00000177427|ENST00000323019|MIEF2;nc|ENSG00000177427|Q96C03-3|MIEF2	ENSG00000177427|ENST00000323019|MIEF2	ENSG00000177427|ENST00000323019|MIEF2	MULTI-MSMS	OvCa99_classI_Rep5	1	566.7887573242188	2	566.786981	1131.55941	1.8122	0.0010271	1.5904	0.00090139	3.4026	0.0019285	566.7877677672303	127.25	1.3202	127.25	127.05	128.37	0					81	28	4	0	0	0	0.34811	1	14747	14747		75.043	2.1641	1	2562000			20541	7680	16752	16775	22897	22897					-0.0011083947094903124
IRPTGDELAI	10	Unmodified	_IRPTGDELAI_					0	0	0			REV__ENSG00000177103|ENST00000651296|DSCAML1	REV__ENSG00000177103|ENST00000651296|DSCAML1	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.80419921875	2	542.803488	1083.59242	0.68477	0.0003717	-1.6929	-0.00091889	-1.0081	-0.00054719	542.8024828624872	86.214	1.0363	83.568	83.293	84.33	-2.6463					58	20	4	0	0	0	0.47142	1	7284	7284		58.23	0	1	934860	+		20542	21986	16753	16776	22898	22898					0.053971106434119065
IRPVSSCT	8	Unmodified	_IRPVSSCT_					0	0	0		ENSG00000176853|ENST00000334705|FAM91A1;ENST00000446265.3_1:149648157-149648721:+|nuORF;nc|ENSG00000291158|P0C866|LINC00869;ENST00000456826.2_1_1:149262279-149263299:+|nuORF	ENSG00000176853|ENST00000334705|FAM91A1;ENST00000456826.2_1_1:149262279-149263299:+|nuORF	ENST00000456826.2_1_1:149262279-149263299:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	431.7273254394531	2	431.726195	861.437837	1.8785	0.00081098	0.81136	0.00035028	2.6898	0.0011613	431.7264109975534	127.27	0.89854	127.27	127.05	127.95	0					37	19	2	0	0	0	0.71369	1	14725	14725		40.573	1.7665	1	454160			20543	7630;12115	16754	16777	22899	22899					0.0015758295720615934
IRQAIIIKTT	10	Unmodified	_IRQAIIIKTT_					0	0	0			REV__tr|A0A7D6VTT5|A0A7D6VTT5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03870PE=4SV=1	REV__tr|A0A7D6VTT5|A0A7D6VTT5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03870PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.3123168945312	2	578.874248	1155.73394	0.59396	0.00034383	3.7129	0.0021493	4.3069	0.0024931	578.8767202326014	153.65	0.67809	153.65	153.35	154.03	0					17	13	2	0	0	0	0.027145	1	17970	17970		18.262	0	1	48505	+		20544	31628	16755	16778	22900	22900					0.1623052873655979
IRQHQALI	8	Unmodified	_IRQHQALI_					0	0	0			REV__ENSG00000197128|ENST00000356584|ZNF772	REV__ENSG00000197128|ENST00000356584|ZNF772	MULTI-MSMS	OvCa9_classI_Rep2	2	489.7957458496094	2	489.795801	977.577048	-0.22979	-0.00011255	0.11487	5.6261E-05	-0.11492	-5.6288E-05	489.795669737206	39.474	1.0919	36.764	36.459	37.551	-2.7097					56	21	4	0	0	0	0.72134	1	1930	1930		39.021	0	1	203380	+		20545	22893	16756	16779	22901	22901					0.08736288636896461
IRQIIVVC	8	Unmodified	_IRQIIVVC_					0	0	0			REV__ENST00000479053.1_1_9:36037023-36058854:+|nuORF	REV__ENST00000479053.1_1_9:36037023-36058854:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	472.2874450683594	2	472.291505	942.568457	-3.3722	-0.0015927	-4.4722	-0.0021122	-7.8444	-0.0037048	472.2892568382278	150.85	1.4757	150.62	150.22	151.7	-0.22697					85	29	4	0	0	0	0.75991	1	15322	15322		21.702	0	1	396600	+		20546	26358	16757	16780	22902	22902					0.09487598676048492
IRQKCPAE	8	Unmodified	_IRQKCPAE_					0	0	0			REV__nc|ENSG00000198466|Q96SQ5-2|ZNF587	REV__nc|ENSG00000198466|Q96SQ5-2|ZNF587	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.7543640136719	2	472.752744	943.490935	1.0184	0.00048145	-0.80801	-0.00038199	0.21039	9.9461E-05	472.75234742263694	64.577	1.9384	61.091	60.24	62.179	-3.4854					97	39	4	0	0	0	0.62934	1	4586	4586		57.811	3.035	1	3821600	+		20547	21776	16758	16781	22903	22903					0.01692960739865157
IRQLKLRKR	9	Unmodified	_IRQLKLRKR_					0	0	0			REV__ENST00000494882.1_1_18:13919720-13919822:-|nuORF	REV__ENST00000494882.1_1_18:13919720-13919822:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	605.8253173828125	2	605.914573	1209.81459	1.7566	0.0010644	-4.0145	-0.0024324	-2.2579	-0.0013681	605.9116971745177	90.678	0.24183	90.678	90.615	90.857	0					8	5	2	0	0	0	0.027462	1	9742	9742		12.207	0.69583	1	280630	+		20548	26736	16759	16782	22904	22904					0.2180785457010188
IRQRFKRMRVK	11	Unmodified	_IRQRFKRMRVK_					0	0	0			REV__tr|A0A7D6ZW82|A0A7D6ZW82_9CLOTABC-FfamilyATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17975PE=4SV=1	REV__tr|A0A7D6ZW82|A0A7D6ZW82_9CLOTABC-FfamilyATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17975PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.7926330566406	3	506.648906	1516.92489	-1.3074	-0.00066238	-2.3731	-0.0012023	-3.6805	-0.0018647	506.6479322778846	45.877	0.67876	42.805	42.404	43.083	-3.0724					18	12	2	0	0	0	0.026488	1	2374	2374		6.3209	0.31984	1	15020	+		20549	32276	16760	16783	22905	22905					0.18710331566830973
IRRCTKKIK	9	Unmodified	_IRRCTKKIK_					0	0	0			REV__ENSG00000092470|ENST00000263795|WDR76	REV__ENSG00000092470|ENST00000263795|WDR76	MULTI-MSMS	OvCa99_classI_Rep5	1	573.3685913085938	2	573.36861	1144.72267	-0.0092487	-5.3029E-06	-3.5691	-0.0020464	-3.5783	-0.0020517	573.3665679624819	57.754	3.5482	57.754	57.48	61.028	0					220	87	5	0	0	0	0.27001	1	4967	4967		66.429	15.094	1	19298000	+		20550	17269	16761	16784	22906	22906					0.15609428161428696
IRRCVIDL	8	Unmodified	_IRRCVIDL_					0	0	0			REV__nc|ENSG00000072210|P51648-2|ALDH3A2	REV__nc|ENSG00000072210|P51648-2|ALDH3A2	MULTI-MSMS	OvCa9_classI_Rep2	2	494.29461669921875	2	494.292037	986.56952	1.7975	0.0008885	4.3396	0.002145	6.1371	0.0030335	494.2941466087284	90.898	1.7806	89.662	88.598	90.379	-1.2355					117	34	4	0	0	0	0.62934	1	8044	8044		57.811	3.035	1	1147000	+		20551	28731	16762	16785	22907	22907					0.07569813044960938
IRRGTETKP	9	Unmodified	_IRRGTETKP_					0	0	0			REV__ENST00000372950.4_1_10:75005924-75006979:-|nuORF	REV__ENST00000372950.4_1_10:75005924-75006979:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.3040161132812	2	529.309272	1056.60399	-0.66376	-0.00035134	-0.022497	-1.1908E-05	-0.68626	-0.00036324	529.309153942795	47.614	0.39732	44.507	44.287	44.684	-3.1077					13	7	2	0	0	0	0.027433	1	2577	2577		51.335	0	1	133760	+		20552	25021	16763	16786	22908	22908					0.07795352457424087
IRRHVLLSSN	10	Unmodified	_IRRHVLLSSN_					0	0	0			REV__ENSG00000186448|ENST00000344387|ZNF197	REV__ENSG00000186448|ENST00000344387|ZNF197	MULTI-MSMS	OvCa9_classI_Rep2	2	597.855712890625	2	597.856921	1193.69929	-3.1766	-0.0018991	2.2834	0.0013652	-0.89312	-0.00053396	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.75313	1	15038	15038		24.519	0	1	436470	+		20553	22586	16764	16787	22909	22909					0.11018705648461946
IRRKFWREWHH	11	Unmodified	_IRRKFWREWHH_					0	0	0		FAXC|p.P332R|1|0.05|ENSG00000146267|chr6:99281399-99281399|G/C|missense_variant	FAXC|p.P332R|1|0.05|ENSG00000146267|chr6:99281399-99281399|G/C|missense_variant	FAXC|p.P332R|1|0.05|ENSG00000146267|chr6:99281399-99281399|G/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.32275390625	3	550.967404	1649.88038	-0.64106	-0.0003532	-1.8037	-0.00099376	-2.4447	-0.001347	550.9664634102454	38.706	0.3052	38.706	38.576	38.882	0					8	6	2	0	0	0	0.026448	1	2209	2209		13.508	3.8618	1	58047			20554	14325	16765	16788	22910	22910					0.08143643745006557
IRRKKRDTWNI	11	Unmodified	_IRRKKRDTWNI_					0	0	0			REV__tr|A0A7D6VRB1|A0A7D6VRB1_9CLOTMechanosensitiveionchannelfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00835PE=3SV=1	REV__tr|A0A7D6VRB1|A0A7D6VRB1_9CLOTMechanosensitiveionchannelfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00835PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.95892333984375	3	495.963548	1484.86881	-6.4865	-0.003217	-3.2349	-0.0016044	-9.7214	-0.0048214	495.96187478588956	163.63	1.693	161.99	160.63	162.32	-1.6336					149	48	4	0	0	0	0.72516	2	16149	16099;16149		13.508	2.1397	1	106460	+		20555	31401	16766	16789	22911;22912	22912					0.14577401931046552
IRRKREEFIQK	11	Unmodified	_IRRKREEFIQK_					0	0	0		ENSG00000182934|ENST00000332118|SRPRA;nc|ENSG00000182934|P08240-2|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	MULTI-MSMS	OvCa9_classI_Rep2	2	501.6343688964844	3	501.63532	1501.88413	-5.5139	-0.002766	3.033	0.0015215	-2.4809	-0.0012445	501.63686894791874	162.29	1.9089	162.06	160.59	162.5	-0.22696					90	37	3	0	0	0	0.72516	1	16498	16498		13.508	2.9211	1	106580			20556	8040	16767	16790	22913	22913					0.15326268728199466
IRRLETSI	8	Unmodified	_IRRLETSI_					0	0	0			REV__INSC|p.D333Pfs*13|1|0.03|ENSG00000188487|chr11:15221512-15221513|-/CCAGGCA|frameshift_variant	REV__INSC|p.D333Pfs*13|1|0.03|ENSG00000188487|chr11:15221512-15221513|-/CCAGGCA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.3019714355469	2	494.300916	986.587279	-4.1633	-0.0020579	3.8974	0.0019265	-0.26595	-0.00013146	494.3027151933939	154.42	1.2699	152.97	152.67	153.94	-1.4516					88	32	5	0	0	0	0.74971	1	15271	15271		26.796	6.3143	1	484960	+		20557	22713	16768	16791	22914	22914					0.09344851571484014
IRRMALWLTRV	11	Unmodified	_IRRMALWLTRV_					0	0	0		ADAMTS9|p.E1212Gfs*28|1|0.05|ENSG00000163638|chr3:64604034-64604035|-/TCTTATGC|frameshift_variant	ADAMTS9|p.E1212Gfs*28|1|0.05|ENSG00000163638|chr3:64604034-64604035|-/TCTTATGC|frameshift_variant	ADAMTS9|p.E1212Gfs*28|1|0.05|ENSG00000163638|chr3:64604034-64604035|-/TCTTATGC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	472.2831115722656	3	472.286974	1413.83909	-6.0447	-0.0028549	-0.76222	-0.00035999	-6.807	-0.0032148	472.28675973301637	159.08	3.3809	157.81	156.71	160.09	-1.267					177	72	4	0	0	0	0.72516	1	13702	13702		13.508	0.55046	1	110830			20558	31	16769	16792	22915	22915					0.14872746661308156
IRRPIARKEV	10	Unmodified	_IRRPIARKEV_					0	0	0			REV__ENSG00000240694|ENST00000522362|PNMA2	REV__ENSG00000240694|ENST00000522362|PNMA2	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.400390625	2	619.396213	1236.77787	1.3389	0.00082929	2.1635	0.0013401	3.5024	0.0021694	619.3974253433613	85.487	0.78294	82.84	82.561	83.344	-2.6463					45	15	4	0	0	0	0.7759	1	7186	7186		21.96	1.9631	1	443500	+		20559	23439	16770	16793	22916	22916					0.1689555795353499
IRRPPLHPE	9	Unmodified	_IRRPPLHPE_					0	0	0		ENST00000361360.3_2_2:105473593-105473881:+|nuORF	ENST00000361360.3_2_2:105473593-105473881:+|nuORF	ENST00000361360.3_2_2:105473593-105473881:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.3399658203125	2	557.827632	1113.64071	0.67036	0.00037395	-2.1346	-0.0011907	-1.4642	-0.00081677	557.8260675025609	46.11	0.30803	46.11	45.934	46.242	0					10	6	2	0	0	0	0.027455	1	3212	3212		51.335	25.761	1	91358			20560	10793	16771	16794	22917	22917					0.08843649073969573
IRRRSSGEP	9	Unmodified	_IRRRSSGEP_					0	0	0			REV__nc|ENSG00000135525|Q14244-5|MAP7	REV__nc|ENSG00000135525|Q14244-5|MAP7	MULTI-MSMS	OvCa99_classI_Rep5	1	529.2962646484375	2	529.296696	1056.57884	-0.086405	-4.5734E-05	-3.1198	-0.0016513	-3.2063	-0.0016971	529.2948863215572	71.392	2.0869	71.392	71.068	73.155	0					112	51	3	0	0	0	0.2422	1	6925	6925		69.628	0.8408	1	4289100	+		20561	19297	16772	16795	22918	22918					0.05281297654869377
IRRVSPKQVVK	11	Unmodified	_IRRVSPKQVVK_					0	0	0			REV__nc|ENSG00000130347|Q8WWV3-3|RTN4IP1	REV__nc|ENSG00000130347|Q8WWV3-3|RTN4IP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	437.7322692871094	3	437.285739	1308.83539	-0.66282	-0.00028984	0.058793	2.5709E-05	-0.60403	-0.00026413	437.28569518432465	54.047	0.51285	50.799	50.619	51.132	-3.2474					12	9	2	0	0	0	0.026033	1	3317	3317		17.167	0	1	10236	+		20562	18942	16773	16796	22919	22919					0.1933240015910087
IRRWAPSPVL	10	Unmodified	_IRRWAPSPVL_					0	0	0			REV__ENST00000522883.1_1_X:47077919-47081683:+|nuORF	REV__ENST00000522883.1_1_X:47077919-47081683:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8563232421875	2	597.858932	1193.70331	-2.7036	-0.0016164	-1.6559	-0.00099001	-4.3595	-0.0026064	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.62299	1	12551	12551		39.253	2.8061	1	591030	+		20563	27025	16774	16797	22920	22920					0.11420795142180395
IRRYSIED	8	Unmodified	_IRRYSIED_					0	0	0		tr|A0A7D6ZXI2|A0A7D6ZXI2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13335PE=4SV=1	tr|A0A7D6ZXI2|A0A7D6ZXI2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13335PE=4SV=1	tr|A0A7D6ZXI2|A0A7D6ZXI2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13335PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2938232421875	2	526.28018	1050.54581	0.83771	0.00044087	-1.4598	-0.00076826	-0.62208	-0.00032739	526.2792423216439	139.12	0.6788	139.12	138.93	139.61	0					21	13	3	0	0	0	0.028476	1	16282	16282		45.952	1.8352	1	53798			20564	35881	16775	16798	22921	22921					0.022556708121328484
IRRYSIED	8	Unmodified	_IRRYSIED_					0	0	0		tr|A0A7D6ZXI2|A0A7D6ZXI2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13335PE=4SV=1	tr|A0A7D6ZXI2|A0A7D6ZXI2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13335PE=4SV=1	tr|A0A7D6ZXI2|A0A7D6ZXI2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13335PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	526.28018	1050.54581	-1.168	-0.00061468	4.124	0.0021704	2.956	0.0015557	526.7852438724295	139.33	1.4741	139.11	138.62	140.09	-0.22697	-0.011464	0.0032193	NaN	45.952	41	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13209			20565	35881	16775	16798							0.022556708121328484
IRRYSIED	8	Unmodified	_IRRYSIED_					0	0	0		tr|A0A7D6ZXI2|A0A7D6ZXI2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13335PE=4SV=1	tr|A0A7D6ZXI2|A0A7D6ZXI2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13335PE=4SV=1	tr|A0A7D6ZXI2|A0A7D6ZXI2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13335PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	526.28018	1050.54581	-2.5859	-0.0013609	5.5758	0.0029344	2.9899	0.0015735	526.279930911611	140.16	0.29584	139.13	138.99	139.28	-1.0339	0.0087597	0.0047473	NaN	45.952	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7628.4			20566	35881	16775	16798							0.022556708121328484
IRSHLISQI	9	Unmodified	_IRSHLISQI_					0	0	0			REV__ENST00000425028.5_1_22:32871099-32879887:+|nuORF	REV__ENST00000425028.5_1_22:32871099-32879887:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	533.8218383789062	2	533.822015	1065.62948	0.24945	0.00013316	-0.79164	-0.0004226	-0.54219	-0.00028943	533.8213653608068	46.24	0.47762	46.24	46.024	46.501	0					31	10	4	0	0	0	0.26076	1	3271	3271		67.494	5.3863	1	787660	+		20567	25650	16776	16799	22922	22922					0.09928826979853511
IRSHSGKKP	9	Unmodified	_IRSHSGKKP_					0	0	0		nc|ENSG00000171469|Q8N587-2|ZNF561;ENSG00000171469|ENST00000302851|ZNF561	nc|ENSG00000171469|Q8N587-2|ZNF561	nc|ENSG00000171469|Q8N587-2|ZNF561	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.3253173828125	2	505.298707	1008.58286	-0.9669	-0.00048857	-2.1273	-0.0010749	-3.0942	-0.0015635	505.29762508043615	106.3	0.30714	104.28	104	104.31	-2.0161					11	5	3	0	0	0	0.027462	1	9668	9668		35.618	3.6634	1	34049			20568	7199	16777	16800	22923	22923					0.0789138714856108
IRSIKILHTM	10	Unmodified	_IRSIKILHTM_					0	0	0			REV__nc|ENSG00000124721|Q96JB1-2|DNAH8	REV__nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3701171875	2	606.368275	1210.722	-0.26856	-0.00016285	2.5756	0.0015618	2.3071	0.0013989	606.369699493104	145.24	3.8933	143.8	141.64	145.53	-1.4357					226	74	4	0	0	0	0.79917	1	14259	14259		19.104	0.77911	1	336140	+		20569	18702	16778	16801	22924	22924					0.12506588721703338
IRSIKILHTMA	11	Unmodified	_IRSIKILHTMA_					0	0	0			REV__nc|ENSG00000124721|Q96JB1-2|DNAH8	REV__nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8819580078125	2	641.886832	1281.75911	-4.6434	-0.0029805	-1.9733	-0.0012666	-6.6167	-0.0042472	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.72064	1	15552	15552		22.58	1.6327	1	543390	+		20570	18702	16779	16802	22925	22925					0.12950260267462
IRSIKILHTMA	11	Unmodified	_IRSIKILHTMA_					0	0	0			REV__nc|ENSG00000124721|Q96JB1-2|DNAH8	REV__nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8826293945312	2	641.886832	1281.75911	-5.3554	-0.0034376	-1.2716	-0.00081624	-6.627	-0.0042538	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.4646	3	13037	13037;13061;13165		56.434	19.987	1	804890	+		20571	18702	16779	16802	22926;22927;22928	22926					0.12950260267462
IRSKIITYI	9	Unmodified	_IRSKIITYI_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-MSMS	OvCa99_classI_Rep5	1	553.8517456054688	2	553.850242	1105.68593	1.909	0.0010573	-0.11799	-6.5349E-05	1.791	0.00099196	553.8500973262884	78.032	1.5297	78.032	77.672	79.202	0					95	36	4	0	0	0	0.14998	2	7900	7874;7900		84.916	17.422	1	12278000			20572	1326	16780	16803	22929;22930	22930					0.13731454816502264
IRSLLSLHV	9	Unmodified	_IRSLLSLHV_					0	0	0		tr|A0A7D6VQF2|A0A7D6VQF2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02895PE=4SV=1	tr|A0A7D6VQF2|A0A7D6VQF2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02895PE=4SV=1	tr|A0A7D6VQF2|A0A7D6VQF2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02895PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	519.327880859375	2	519.326934	1036.63931	0.69387	0.00036034	1.2434	0.00064575	1.9373	0.0010061	519.3274884207567	83.272	0.89259	83.272	82.949	83.841	0					39	20	3	0	0	0	0.53483	1	8645	8645		39.253	0.44669	1	4797000			20573	34847	16781	16804	22931	22931					0.12246014985225884
IRSLPHVTV	9	Unmodified	_IRSLPHVTV_					0	0	0			REV__ENST00000474945.1_1_3:52740223-52740484:+|nuORF	REV__ENST00000474945.1_1_3:52740223-52740484:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.2945251464844	2	511.311284	1020.60801	-0.54003	-0.00027613	-3.2415	-0.0016574	-3.7816	-0.0019336	511.3098794406712	70.39	0.31816	70.39	70.17	70.488	0					11	7	2	0	0	0	0.027462	1	6748	6748		18.324	0	1	194640	+		20574	26348	16782	16805	22932	22932					0.09853441951133846
IRSNNINTL	9	Unmodified	_IRSNNINTL_					0	0	0		ENSG00000125124|ENST00000245157|BBS2	ENSG00000125124|ENST00000245157|BBS2	ENSG00000125124|ENST00000245157|BBS2	MULTI-MSMS	OvCa99_classI_Rep5	1	522.79443359375	2	522.793455	1043.57236	-0.40306	-0.00021072	-0.10217	-5.3413E-05	-0.50523	-0.00026413	522.7934234543081	57.027	1.3609	57.027	56.538	57.899	0					85	31	5	0	0	0	0.045281	2	4756	4756;4780		122.18	31.399	1	9309300			20575	3692	16783	16806	22933;22934	22933					0.05231359703475391
IRSPEEAVTFL	11	Unmodified	_IRSPEEAVTFL_					0	0	0		tr|A0A7D6ZYW9|A0A7D6ZYW9_9CLOTAspartyl/glutamyl-tRNA(Asn/Gln)amidotransferasesubunitBOS=ClostridiumintestinaleOX=36845GN=gatBPE=3SV=1	tr|A0A7D6ZYW9|A0A7D6ZYW9_9CLOTAspartyl/glutamyl-tRNA(Asn/Gln)amidotransferasesubunitBOS=ClostridiumintestinaleOX=36845GN=gatBPE=3SV=1	tr|A0A7D6ZYW9|A0A7D6ZYW9_9CLOTAspartyl/glutamyl-tRNA(Asn/Gln)amidotransferasesubunitBOS=ClostridiumintestinaleOX=36845GN=gatBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	631.3417358398438	2	631.342978	1260.6714	-0.55643	-0.0003513	0.14669	9.2613E-05	-0.40974	-0.00025869	631.3431003617924	96.364	1.3318	95.336	95.013	96.345	-1.0281					66	26	4	0	0	0	0.34051	1	8695	8695		65.465	5.3471	1	269970			20576	35934	16784	16807	22935	22935					0.0514933787769678
IRSQAIHQL	9	Unmodified	_IRSQAIHQL_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;ENST00000565738.1_1_16:75674022-75675473:-|nuORF	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-MSMS	OvCa99_classI_Rep5	1	533.3125	2	533.311815	1064.60908	0.054883	2.927E-05	-0.3651	-0.00019471	-0.31021	-0.00016544	533.3115791912027	46.653	1.4851	46.653	46.369	47.854	0					78	33	4	0	0	0	0.033166	2	3299	3299;3322		132.76	19.346	1	8066100			20577	1326	16785	16808	22936;22937	22936					0.07935656320046292
IRSQAIHQL	9	Unmodified	_IRSQAIHQL_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;ENST00000565738.1_1_16:75674022-75675473:-|nuORF	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	533.311815	1064.60908	-2.5944	-0.0013836	2.6087	0.0013913	0.014352	7.654E-06	533.3125370277832	50.142	0.72844	47	46.82	47.548	-3.1416	0.17333	0.0030608	NaN	132.76	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15192			20578	1326	16785	16808							0.07935656320046292
IRSRPPLN	8	Unmodified	_IRSRPPLN_					0	0	0		ENSG00000134278|ENST00000409402|SPIRE1;nc|ENSG00000134278|Q08AE8-4|SPIRE1;nc|ENSG00000134278|Q08AE8-3|SPIRE1;nc|ENSG00000134278|Q08AE8-5|SPIRE1;nc|ENSG00000134278|Q08AE8-2|SPIRE1	ENSG00000134278|ENST00000409402|SPIRE1	ENSG00000134278|ENST00000409402|SPIRE1	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.81317138671875	2	476.787976	951.561398	3.1406	0.0014974	3.4192	0.0016302	6.5599	0.0031277	476.78973998100287	89.756	0.37503	89.756	89.516	89.891	0					13	8	2	0	0	0	0.028476	1	9578	9578		14.865	0.72775	1	145560			20579	4276	16786	16809	22938	22938					0.08368002119846096
IRSRVLADLR	10	Unmodified	_IRSRVLADLR_					0	0	0		tr|A0A553SKR1|A0A553SKR1_NIACI5-formyltetrahydrofolatecyclo-ligaseOS=NialliacirculansOX=1397GN=CEQ21_19250PE=3SV=1	tr|A0A553SKR1|A0A553SKR1_NIACI5-formyltetrahydrofolatecyclo-ligaseOS=NialliacirculansOX=1397GN=CEQ21_19250PE=3SV=1	tr|A0A553SKR1|A0A553SKR1_NIACI5-formyltetrahydrofolatecyclo-ligaseOS=NialliacirculansOX=1397GN=CEQ21_19250PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	400.25079345703125	3	400.250806	1197.73059	0.57395	0.00022972	-0.53148	-0.00021272	0.042476	1.7001E-05	400.250515564864	34.888	0.47252	34.888	34.725	35.198	0					25	9	4	0	0	0	0.73063	1	1716	1716		27.047	0	1	481210			20580	33643	16787	16810	22939	22939					0.1396327868253593
IRSSKFLGRN	10	Unmodified	_IRSSKFLGRN_					0	0	0		ENST00000371936.5_1_X:114248436-114249048:-|nuORF	ENST00000371936.5_1_X:114248436-114249048:-|nuORF	ENST00000371936.5_1_X:114248436-114249048:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3427124023438	2	589.343646	1176.67274	-3.0463	-0.0017953	1.897	0.001118	-1.1493	-0.00067734	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.762	1	14981	14981		23.523	3.5259	1	272220			20581	10969	16788	16811	22940	22940					0.09147016757151505
IRTKAIDV	8	Unmodified	_IRTKAIDV_					0	0	0			REV__nc|ENSG00000108528|Q02978-2|SLC25A11	REV__nc|ENSG00000108528|Q02978-2|SLC25A11	MULTI-MSMS	OvCa9_classI_Rep2	2	458.28350830078125	2	458.284734	914.554916	0.40148	0.00018399	-0.37804	-0.00017325	0.023443	1.0744E-05	458.2843773872066	64.387	1.915	61.662	61.128	63.043	-2.7246					92	36	4	0	0	0	0.62474	1	4897	4897		58.782	5.4305	1	384610	+		20582	17894	16789	16812	22941	22941					0.09422064168472843
IRTQCCRS	8	Unmodified	_IRTQCCRS_					0	0	0		ENSG00000136378|ENST00000388820|ADAMTS7	ENSG00000136378|ENST00000388820|ADAMTS7	ENSG00000136378|ENST00000388820|ADAMTS7	MULTI-MSMS	OvCa99_classI_Rep5	1	483.7331848144531	2	483.734029	965.453504	1.1486	0.00055564	-2.7275	-0.0013194	-1.5789	-0.00076376	483.73251068662125	138.93	0.96478	138.93	138.64	139.61	0					41	19	4	0	0	0	0.74992	1	16267	16267		26.693	1.2427	1	280790			20583	4486	16790	16813	22942	22942					-0.03060453797388618
IRTREVFE	8	Unmodified	_IRTREVFE_					0	0	0		tr|A0A7D6ZYB3|A0A7D6ZYB3_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01475PE=4SV=1	tr|A0A7D6ZYB3|A0A7D6ZYB3_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01475PE=4SV=1	tr|A0A7D6ZYB3|A0A7D6ZYB3_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01475PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.3062133789062	2	525.290548	1048.56654	-0.17053	-8.958E-05	0.076749	4.0315E-05	-0.093784	-4.9264E-05	525.2901818425981	70.716	0.66186	70.716	70.447	71.109	0					23	16	2	0	0	0	0.028476	1	6792	6792		25.45	1.2474	1	683150			20584	35913	16791	16814	22943	22943					0.04420261191808095
IRTRREEGLN	10	Unmodified	_IRTRREEGLN_					0	0	0			REV__ENSG00000283205|ENST00000636536|unknown	REV__ENSG00000283205|ENST00000636536|unknown	MULTI-MSMS	OvCa9_classI_Rep2	2	622.3473510742188	2	622.346917	1242.67928	-2.1525	-0.0013396	4.222	0.0026275	2.0694	0.0012879	622.3494484147533	118.64	1.3857	118.49	117.99	119.37	-0.14755					77	27	4	0	0	0	0.58067	1	11406	11406		44.377	1.981	1	306460	+		20585	23662	16792	16815	22944	22944					0.06764909917865225
IRTVIIFFFSK	11	Unmodified	_IRTVIIFFFSK_					0	0	0		nc|ENSG00000144320|Q9C0E8-2|LNPK;ENSG00000144320|ENST00000272748|LNPK;nc|ENSG00000144320|Q9C0E8-4|LNPK	nc|ENSG00000144320|Q9C0E8-2|LNPK	nc|ENSG00000144320|Q9C0E8-2|LNPK	MULTI-MSMS	OvCa9_classI_Rep3	3	457.6074523925781	3	457.611341	1369.81219	-6.2055	-0.0028397	-0.79343	-0.00036308	-6.999	-0.0032028	457.6108688134911	157.03	3.4081	155.86	154.91	158.32	-1.1707					147	80	2	0	0	0	0.72528	1	13512	13512		11.932	2.2862	1	68588			20586	5141	16793	16816	22945	22945					0.14207961321790208
IRTVVIIVL	9	Unmodified	_IRTVVIIVL_					0	0	0		tr|A0A7D6VTF9|A0A7D6VTF9_9CLOTEamAfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_08830PE=3SV=1	tr|A0A7D6VTF9|A0A7D6VTF9_9CLOTEamAfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_08830PE=3SV=1	tr|A0A7D6VTF9|A0A7D6VTF9_9CLOTEamAfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_08830PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	513.3590087890625	2	513.357702	1024.70085	0.77329	0.00039697	0.91426	0.00046934	1.6875	0.00086632	513.3580192906047	152.93	1.5038	152.93	152.62	154.12	0					70	31	3	0	0	0	0.53483	1	17924	17924		39.253	1.4413	1	214180			20587	35111	16794	16817	22946	22946					0.18948946684508883
IRVAQLVS	8	Unmodified	_IRVAQLVS_					0	0	0		tr|A0A7D6VR86|A0A7D6VR86_9CLOTPhosphatidylglycerol--prolipoproteindiacylglyceryltransferaseOS=ClostridiumintestinaleOX=36845GN=lgtPE=3SV=1	tr|A0A7D6VR86|A0A7D6VR86_9CLOTPhosphatidylglycerol--prolipoproteindiacylglyceryltransferaseOS=ClostridiumintestinaleOX=36845GN=lgtPE=3SV=1	tr|A0A7D6VR86|A0A7D6VR86_9CLOTPhosphatidylglycerol--prolipoproteindiacylglyceryltransferaseOS=ClostridiumintestinaleOX=36845GN=lgtPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	443.28045654296875	2	443.279452	884.544351	3.0989	0.0013737	-0.71429	-0.00031663	2.3846	0.001057	443.2790572668541	76.464	0.72295	76.464	76.238	76.961	0					42	17	3	0	0	0	0.53531	1	7657	7657		73.975	0	1	3977200			20588	34902	16795	16818	22947	22947					0.09746081514026628
IRVGWEQLL	9	Unmodified	_IRVGWEQLL_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENSG00000248746|ENST00000513398|ACTN3;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4	nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	OvCa99_classI_Rep5	1	557.326171875	2	557.324391	1112.63423	1.2486	0.0006959	-0.085188	-4.7477E-05	1.1635	0.00064842	557.3242736095807	124.26	1.4143	124.26	123.92	125.33	0					90	31	4	0	0	0	0.1243	1	14347	14347		90.601	7.8504	1	10010000			20589	1464;3986	16796	16819	22948	22948					0.08241711122605011
IRVIIIGRIKG	11	Unmodified	_IRVIIIGRIKG_					0	0	0			REV__tr|A0A553SIK5|A0A553SIK5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15045PE=4SV=1	REV__tr|A0A553SIK5|A0A553SIK5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15045PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	413.28363037109375	3	413.28708	1236.83941	0.041576	1.7183E-05	-2.3426	-0.00096817	-2.301	-0.00095099	413.28604023020563	26.549	0.49924	26.549	26.392	26.892	0					19	9	3	0	0	0	0.72516	1	710	710		13.508	2.4112	1	54778	+		20590	29900	16797	16820	22949	22949					0.23046489652824675
IRVIIIGRIKG	11	Unmodified	_IRVIIIGRIKG_					0	0	0			REV__tr|A0A553SIK5|A0A553SIK5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15045PE=4SV=1	REV__tr|A0A553SIK5|A0A553SIK5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15045PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	413.28708	1236.83941	0.041576	1.7183E-05	-2.3426	-0.00096817	-2.301	-0.00095099	413.28604023020563	26.549	0.49924	26.549	26.392	26.892	0	0	0	NaN	13.508	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54778	+		20591	29900	16797	16820							0.23046489652824675
IRVVLESHD	9	Unmodified	_IRVVLESHD_					0	0	0			REV__nc|ENSG00000229715|Q658K8|EEF1DP3	REV__nc|ENSG00000229715|Q658K8|EEF1DP3	MULTI-SECPEP	OvCa9_classI_Rep2	2	533.8446044921875	2	534.29583	1066.57711	-2.0859	-0.0011145	1.7827	0.00095249	-0.30321	-0.000162	534.2965259605002	53.485	1.0931	50.671	50.182	51.275	-2.8139					31	21	2	0	0	0	0.027462	1	3595	3595		35.618	15.136	1	28370	+		20592	29143	16798	16821	22950	22950					0.04648243846236255
IRWKLLML	8	Unmodified	_IRWKLLML_					0	0	0		ENSG00000112486|ENST00000341935|CCR6	ENSG00000112486|ENST00000341935|CCR6	ENSG00000112486|ENST00000341935|CCR6	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2904663085938	2	536.838623	1071.66269	1.3665	0.00073358	2.3846	0.0012801	3.751	0.0020137	536.8402613594363	102.13	0.30114	102.13	101.87	102.17	0					11	6	2	0	0	0	0.028476	1	11353	11353		42.474	14.592	1	183730			20593	2908	16799	16822	22951	22951					0.12972737498193965
IRWNGLSQD	9	Unmodified	_IRWNGLSQD_					0	0	0			REV__LMNB2|p.S553Mfs*13|1|0.4|ENSG00000176619|chr19:2431834-2431835|GC/-|frameshift_variant	REV__LMNB2|p.S553Mfs*13|1|0.4|ENSG00000176619|chr19:2431834-2431835|GC/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	544.779052734375	2	544.777805	1087.54106	1.5844	0.00086316	1.4005	0.00076293	2.9849	0.0016261	544.7783465181305	61.638	1.529	58.569	57.997	59.526	-3.0685					84	39	3	0	0	0	0.69666	1	2199	2199		19.104	0.84144	1	38046	+		20594	21958	16800	16823	22952	22952					0.0007878666938267997
IRYEGILYT	9	Unmodified	_IRYEGILYT_					0	0	0		nc|ENSG00000149657|Q9BX40-2|LSM14B;ENSG00000149657|ENST00000279068|LSM14B;nc|ENSG00000257103|Q8ND56-3|LSM14A;nc|ENSG00000257103|Q8ND56|LSM14A;ENSG00000257103|ENST00000544216|LSM14A	nc|ENSG00000149657|Q9BX40-2|LSM14B	nc|ENSG00000149657|Q9BX40-2|LSM14B	MULTI-MSMS	OvCa99_classI_Rep5	1	564.3106079101562	2	564.308406	1126.60226	2.6265	0.0014821	-0.07045	-3.9756E-05	2.556	0.0014424	564.3081990649894	95.14	0.54628	95.14	94.905	95.451	0					30	12	3	0	0	0	0.1804	1	10373	10373		79.713	20.931	1	2880400			20595	5486	16801	16824	22953	22953					0.04402298648801661
IRYGQTKKM	9	Oxidation (M)	_IRYGQTKKM(Oxidation (M))_		IRYGQTKKM(1)		IRYGQTKKM(53)	0	0	1		ENSG00000031698|ENST00000234677|SARS1;ENST00000468588.1_1_1:109779017-109779290:+|nuORF	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	MULTI-MSMS	OvCa99_classI_Rep5	1	570.8136596679688	2	570.813333	1139.61211	-0.78678	-0.00044911	0.918	0.000524	0.13121	7.4899E-05	570.8136522855269	25.719	2.149	25.719	25.442	27.591	0					96	42	4	0	0	0	0.38969	1	629	629		52.937	8.8199	1	276520			20596	1067	16802	16825	22954	22954		38			0.04789163382520201
IRYGQTKKM	9	Unmodified	_IRYGQTKKM_					0	0	0		ENSG00000031698|ENST00000234677|SARS1;ENST00000468588.1_1_1:109779017-109779290:+|nuORF	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	MULTI-MSMS	OvCa99_classI_Rep5	1	562.8152465820312	2	562.815876	1123.6172	0.42056	0.0002367	-0.91376	-0.00051428	-0.49319	-0.00027758	562.8152847055399	30.657	0.78492	30.657	30.433	31.218	0					41	15	4	0	0	0	0.14998	2	1186	1186;1212		84.916	29.411	1	1236400			20597	1067	16802	16826	22955;22956	22955					0.06033467245151769
IRYTCAAM	8	Unmodified	_IRYTCAAM_					0	0	0			REV__nc|ENSG00000060709|O15034-2|RIMBP2	REV__nc|ENSG00000060709|O15034-2|RIMBP2	MULTI-SECPEP	OvCa9_classI_Rep2	2	463.7978820800781	2	464.722598	927.430643	0.00163	7.575E-07	3.6844	0.0017122	3.686	0.001713	464.7239411574442	70.361	0.80461	67.79	67.361	68.166	-2.5707					23	15	2	0	0	0	0.028476	1	5661	5661		38.806	20.482	1	37831	+		20598	16740	16803	16827	22957	22957					-0.0359747291486201
ISAALKPAL	9	Unmodified	_ISAALKPAL_					0	0	0		ENSG00000175336|ENST00000398189|APOF	ENSG00000175336|ENST00000398189|APOF	ENSG00000175336|ENST00000398189|APOF	MULTI-MSMS	OvCa9_classI_Rep3	3	442.2849426269531	2	442.284203	882.553853	-0.70892	-0.00031354	0.50526	0.00022347	-0.20366	-9.0077E-05	442.28433092279454	83.254	2.6802	80.958	80.579	83.259	-2.2963					132	55	4	0	0	0	0.33652	1	4767	4767		58.782	2.0609	1	1348800			20599	7536	16804	16828	22958	22958					0.10787849799555715
ISAALKPAL	9	Unmodified	_ISAALKPAL_					0	0	0		ENSG00000175336|ENST00000398189|APOF	ENSG00000175336|ENST00000398189|APOF	ENSG00000175336|ENST00000398189|APOF	MULTI-MSMS	OvCa9_classI_Rep4_	4	442.2859191894531	2	442.284203	882.553853	0.10729	4.7454E-05	-0.064456	-2.8508E-05	0.042836	1.8946E-05	442.2840700770903	83.732	1.9627	81.069	80.681	82.643	-2.6629					125	40	4	0	0	0	0.48324	1	7042	7042		44.117	3.3386	1	1109000			20600	7536	16804	16828	22959	22959					0.10787849799555715
ISADRYVAI	9	Unmodified	_ISADRYVAI_					0	0	0		ENSG00000184451|ENST00000332438|CCR10	ENSG00000184451|ENST00000332438|CCR10	ENSG00000184451|ENST00000332438|CCR10	MULTI-MSMS	OvCa99_classI_Rep5	1	504.2816467285156	2	504.279649	1006.54475	2.0572	0.0010374	-1.0508	-0.00052991	1.0064	0.00050751	504.2793937428511	85.678	2.46	85.678	85.211	87.671	0					148	59	6	0	0	0	0.22961	1	8957	8957		71.296	7.0884	1	27487000			20601	8159	16805	16829	22960	22960					0.04173456443231771
ISAEHLVSL	9	Unmodified	_ISAEHLVSL_					0	0	0			REV__tr|A0A553SPC2|A0A553SPC2_NIACIUPF0358proteinCEQ21_26120OS=NialliacirculansOX=1397GN=CEQ21_26120PE=3SV=1	REV__tr|A0A553SPC2|A0A553SPC2_NIACIUPF0358proteinCEQ21_26120OS=NialliacirculansOX=1397GN=CEQ21_26120PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	484.774169921875	2	484.7742	967.533846	1.046	0.00050707	-1.5483	-0.00075059	-0.50234	-0.00024352	484.77344610274326	91.377	2.4981	90.141	89.488	91.987	-1.2355					132	47	4	0	0	0	0.11171	2	8121	8121;8167		94.006	8.5128	1	3844000	+		20602	30522	16806	16830	22961;22962	22961					0.04878054068944948
ISAGLSTY	8	Unmodified	_ISAGLSTY_					0	0	0			REV__ENSG00000173214|ENST00000671876|MFSD4B	REV__ENSG00000173214|ENST00000671876|MFSD4B	MULTI-SECPEP	OvCa99_classI_Rep5	1	406.2285461425781	2	406.213443	810.412334	0.50254	0.00020414	0.13486	5.4782E-05	0.6374	0.00025892	406.21344898151824	53.411	0.56096	53.411	53.172	53.733	0					26	12	3	0	0	0	0.028476	1	4250	4250		83.287	8.7706	1	634200	+		20603	21756	16807	16831	22963	22963					-0.0004556829356943126
ISAKPLEM	8	Oxidation (M)	_ISAKPLEM(Oxidation (M))_		ISAKPLEM(1)		ISAKPLEM(130)	0	0	1		ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	MULTI-MSMS	OvCa9_classI_Rep4_	4	452.7450866699219	2	452.744053	903.473554	0.56501	0.0002558	-0.84004	-0.00038032	-0.27503	-0.00012452	452.743525922456	58.063	1.3096	54.718	54.24	55.549	-3.3449					74	25	4	0	0	0	0.13946	3	3807	3797;3807;3818		134.81	32.037	1	807990			20604	1709	16808	16832	22964;22965;22966	22965		63			0.01795620414213772
ISAKPLEM	8	Oxidation (M)	_ISAKPLEM(Oxidation (M))_					0	0	1		ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	MULTI-MATCH	OvCa9_classI_Rep2	2		2	452.744053	903.473554	1.3521	0.00061213	-1.2654	-0.00057289	0.086675	3.9242E-05	452.7433135039001	57.711	1.1994	54.919	54.427	55.627	-2.792	0.10079	-0.0001468	NaN	134.81	51	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119580			20605	1709	16808	16832				63			0.01795620414213772
ISALERSYSQ	10	Unmodified	_ISALERSYSQ_					0	0	0			REV__tr|A0A553SNW7|A0A553SNW7_NIACIRibosome-recyclingfactorOS=NialliacirculansOX=1397GN=frrPE=3SV=1	REV__tr|A0A553SNW7|A0A553SNW7_NIACIRibosome-recyclingfactorOS=NialliacirculansOX=1397GN=frrPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	576.8475952148438	2	577.296027	1152.5775	-0.18464	-0.00010659	-1.975	-0.0011402	-2.1597	-0.0012468	577.2945830773531	60.171	0.88478	56.741	56.21	57.095	-3.43					24	17	2	0	0	0	0.027028	1	4031	4031		18.262	2.929	1	90951	+		20606	30466	16809	16833	22967	22967					0.007316187754213388
ISALETRKGY	10	Unmodified	_ISALETRKGY_					0	0	0		ENST00000381309.7_2_9:6893231-6981034:+|nuORF	ENST00000381309.7_2_9:6893231-6981034:+|nuORF	ENST00000381309.7_2_9:6893231-6981034:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.3387451171875	2	569.316763	1136.61897	0.097848	5.5707E-05	1.1136	0.00063398	1.2114	0.00068968	569.3172352545375	46.603	0.83262	46.603	46.198	47.03	0					46	18	4	0	0	0	0.026665	1	3348	3348		34.173	0	1	1050600			20607	11162	16810	16834	22968	22968					0.056127995347424076
ISALKAIHAL	10	Unmodified	_ISALKAIHAL_					0	0	0		nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	MULTI-MSMS	OvCa9_classI_Rep3	3	518.828369140625	2	518.829309	1035.64407	1.7024	0.00088324	-2.0698	-0.0010739	-0.36745	-0.00019064	518.8281964515016	122.5	2.5536	121.47	120.64	123.19	-1.0286					133	48	4	0	0	0	0.26627	1	9418	9418		84.916	18.486	1	994930			20608	6469	16811	16835	22969	22969					0.12766899127973375
ISALRKLIP	9	Unmodified	_ISALRKLIP_					0	0	0		tr|A0A7D7A4M7|A0A7D7A4M7_9CLOTIon-translocatingoxidoreductasecomplexsubunitEOS=ClostridiumintestinaleOX=36845GN=rnfEPE=3SV=1	tr|A0A7D7A4M7|A0A7D7A4M7_9CLOTIon-translocatingoxidoreductasecomplexsubunitEOS=ClostridiumintestinaleOX=36845GN=rnfEPE=3SV=1	tr|A0A7D7A4M7|A0A7D7A4M7_9CLOTIon-translocatingoxidoreductasecomplexsubunitEOS=ClostridiumintestinaleOX=36845GN=rnfEPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.81121826171875	2	505.839677	1009.6648	-0.94633	-0.00047869	2.3655	0.0011965	1.4191	0.00071785	505.84094417452667	89.167	0.84389	87.036	86.75	87.594	-2.1309					38	16	4	0	0	0	0.027455	1	5476	5476		19.997	0	1	78883			20609	36148	16812	16836	22970	22970					0.16035489507646616
ISALSAPLL	9	Unmodified	_ISALSAPLL_					0	0	0			REV__ENST00000579192.5_1_17:8198292-8198649:-|nuORF	REV__ENST00000579192.5_1_17:8198292-8198649:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.2592468261719	2	442.776211	883.537869	0.19744	8.7423E-05	2.901	0.0012845	3.0985	0.0013719	442.7758914075393	38.434	0.69261	35.508	35.255	35.948	-2.9264					20	13	2	0	0	0	0.027456	1	1516	1516		35.201	9.7505	1	17424	+		20610	27811	16813	16837	22971	22971					0.09144143562662066
ISANLREPS	9	Unmodified	_ISANLREPS_					0	0	0			REV__NCOA6|p.A1848Wfs*4|1|0.09|ENSG00000198646|chr20:34740711-34740715|CTGCA/-|frameshift_variant	REV__NCOA6|p.A1848Wfs*4|1|0.09|ENSG00000198646|chr20:34740711-34740715|CTGCA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	493.7668762207031	2	493.766906	985.519259	-0.73998	-0.00036538	-0.23368	-0.00011539	-0.97367	-0.00048076	493.76710400194355	68.35	1.8857	65.73	65.18	67.066	-2.6203					109	37	6	0	0	0	0.11471	1	5392	5392		93.195	2.5946	1	960960	+		20611	23040	16814	16838	22972	22972					0.025919819208070294
ISANLREPS	9	Unmodified	_ISANLREPS_					0	0	0			REV__NCOA6|p.A1848Wfs*4|1|0.09|ENSG00000198646|chr20:34740711-34740715|CTGCA/-|frameshift_variant	REV__NCOA6|p.A1848Wfs*4|1|0.09|ENSG00000198646|chr20:34740711-34740715|CTGCA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.7673034667969	2	493.766906	985.519259	1.3259	0.00065468	-2.1019	-0.0010379	-0.77606	-0.00038319	493.7658974298156	67.896	1.3245	64.405	63.938	65.262	-3.4902					78	26	5	0	0	0	0.059253	1	5029	5029		113.41	20.216	1	6506900	+		20612	23040	16814	16838	22973	22973					0.025919819208070294
ISANLREPS	9	Unmodified	_ISANLREPS_					0	0	0			REV__NCOA6|p.A1848Wfs*4|1|0.09|ENSG00000198646|chr20:34740711-34740715|CTGCA/-|frameshift_variant	REV__NCOA6|p.A1848Wfs*4|1|0.09|ENSG00000198646|chr20:34740711-34740715|CTGCA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.76776123046875	2	493.766906	985.519259	-0.2047	-0.00010108	-1.2694	-0.00062678	-1.4741	-0.00072786	493.7666268521124	69.087	1.8109	65.596	65.212	67.023	-3.4902					122	36	6	0	0	0	0.083631	2	5161	5161;5213		101.6	16.44	1	4197400	+		20613	23040	16814	16838	22974;22975	22974					0.025919819208070294
ISAPRHGSI	9	Unmodified	_ISAPRHGSI_					0	0	0		nc|ENSG00000144908|O75891-4|ALDH1L1;ENST00000473607.5_1_3:125854214-125879740:-|nuORF;nc|ENSG00000144908|O75891-2|ALDH1L1;ENSG00000144908|ENST00000393434|ALDH1L1;nc|ENSG00000144908|O75891-3|ALDH1L1	nc|ENSG00000144908|O75891-4|ALDH1L1	nc|ENSG00000144908|O75891-4|ALDH1L1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	469.254638671875	2	469.264333	936.514114	0.77138	0.00036198	1.2939	0.00060716	2.0652	0.00096914	469.2659296306006	87.001	0.14821	84.374	84.25	84.399	-2.6269					4	2	2	0	0	0	0.027247	1	7369	7369		79.713	8.4169	1	13098			20614	5193	16815	16839	22976	22976					0.04331722848860409
ISAQHQPK	8	Unmodified	_ISAQHQPK_					0	0	0			REV__nc|ENSG00000104055|O43548-2|TGM5	REV__nc|ENSG00000104055|O43548-2|TGM5	MULTI-MSMS	OvCa99_classI_Rep5	1	454.7524108886719	2	454.751059	907.487565	-0.44889	-0.00020414	0.58681	0.00026685	0.13792	6.2718E-05	454.751209306093	70.332	0.67178	70.332	70.089	70.761	0					35	16	3	0	0	0	0.745	1	6740	6740		29.15	0	1	1486400	+		20615	17641	16816	16840	22977	22977					0.030120339575205435
ISAQLAHCN	9	Unmodified	_ISAQLAHCN_					0	0	0		chr12:131771825-131778065|100|14.93|0.65|4.53|+|0|TE_info:AluSc,AluSc_dup24812,Alu,SINE,donor,-,131771651,131771825|None,SFSWAP|1	chr12:131771825-131778065|100|14.93|0.65|4.53|+|0|TE_info:AluSc,AluSc_dup24812,Alu,SINE,donor,-,131771651,131771825|None,SFSWAP|1	chr12:131771825-131778065|100|14.93|0.65|4.53|+|0|TE_info:AluSc,AluSc_dup24812,Alu,SINE,donor,-,131771651,131771825|None,SFSWAP|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.9309997558594	2	478.734551	955.45455	1.4367	0.00068781	1.9028	0.00091095	3.3396	0.0015988	478.73528302397733	79.015	0.44526	79.015	78.83	79.276	0					17	10	2	0	0	0	0.027462	1	8059	8059		15.642	0	1	486420			20616	310	16817	16841	22978	22978					-0.024959161568403943
ISASILRSEI	10	Unmodified	_ISASILRSEI_					0	0	0		ENST00000451644.5_1_2:12246998-12271622:+|nuORF	ENST00000451644.5_1_2:12246998-12271622:+|nuORF	ENST00000451644.5_1_2:12246998-12271622:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.821044921875	2	544.819138	1087.62372	-0.96512	-0.00052582	4.466	0.0024332	3.5009	0.0019074	544.8214508612447	117.3	1.5207	115.94	115.51	117.03	-1.3645					81	28	4	0	0	0	0.47142	1	10991	10991		58.23	3.4536	1	408830			20617	12048	16818	16842	22979	22979					0.08341683677531364
ISASVRIQV	9	Unmodified	_ISASVRIQV_					0	0	0		ENSG00000121361|ENST00000240662|KCNJ8	ENSG00000121361|ENST00000240662|KCNJ8	ENSG00000121361|ENST00000240662|KCNJ8	MULTI-MSMS	OvCa99_classI_Rep5	1	486.7955017089844	2	486.795466	971.57638	2.3872	0.0011621	-0.9808	-0.00047745	1.4064	0.00068462	486.79504219611806	75.066	0.56611	75.066	74.841	75.407	0					24	13	3	0	0	0	0.21231	1	7454	7454		74.255	0.28031	1	1468800			20618	3480	16819	16843	22980	22980					0.08945449197199196
ISASVRIQV	9	Unmodified	_ISASVRIQV_					0	0	0		ENSG00000121361|ENST00000240662|KCNJ8	ENSG00000121361|ENST00000240662|KCNJ8	ENSG00000121361|ENST00000240662|KCNJ8	MULTI-MATCH	OvCa9_classI_Rep2	2		2	486.795466	971.57638	-0.29703	-0.00014459	-0.28622	-0.00013933	-0.58325	-0.00028392	486.79528271183864	77.179	1.096	75.39	74.946	76.042	-1.7894	0.22065	-0.00028143	NaN	74.255	34	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37512			20619	3480	16819	16843							0.08945449197199196
ISASVRIQV	9	Unmodified	_ISASVRIQV_					0	0	0		ENSG00000121361|ENST00000240662|KCNJ8	ENSG00000121361|ENST00000240662|KCNJ8	ENSG00000121361|ENST00000240662|KCNJ8	MULTI-MATCH	OvCa9_classI_Rep3	3		2	486.795466	971.57638	-1.3423	-0.00065344	0.87142	0.0004242	-0.4709	-0.00022923	486.79587294301024	77.404	1.0645	75.052	74.786	75.85	-2.3527	-0.11745	0.00084563	NaN	74.255	44	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58551			20620	3480	16819	16843							0.08945449197199196
ISATTVVRPK	10	Unmodified	_ISATTVVRPK_					0	0	0			REV__nc|ENSG00000122367|O75112-3|LDB3	REV__nc|ENSG00000122367|O75112-3|LDB3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.3057861328125	2	536.329673	1070.64479	-0.81223	-0.00043562	-1.7399	-0.00093315	-2.5521	-0.0013688	536.3295181638375	75.196	1.0642	71.966	71.58	72.645	-3.2308					41	20	3	0	0	0	0.026849	1	5981	5981		25.574	5.5773	1	190010	+		20621	18588	16820	16844	22981	22981					0.11229693777045213
ISATTVVRPK	10	Unmodified	_ISATTVVRPK_					0	0	0			REV__nc|ENSG00000122367|O75112-3|LDB3	REV__nc|ENSG00000122367|O75112-3|LDB3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	536.329673	1070.64479	-1.2923	-0.0006931	2.4178	0.0012967	1.1255	0.00060365	536.3298889856571	74.088	1.5137	72.117	71.693	73.206	-1.9711	0.075779	0.0035295	NaN	45.972	85	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173590	+		20622	18588	16820	16844							0.11229693777045213
ISAYPAWCL	9	Unmodified	_ISAYPAWCL_					0	0	0		ENST00000285667.3_1_21:15753633-15753711:-|nuORF	ENST00000285667.3_1_21:15753633-15753711:-|nuORF	ENST00000285667.3_1_21:15753633-15753711:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.255126953125	2	512.252046	1022.48954	-0.66625	-0.00034129	3.0526	0.0015637	2.3864	0.0012224	512.253528475125	87.1	2.3549	84.473	83.957	86.312	-2.6269					166	46	5	0	0	0	0.42057	1	7435	7435		50.025	7.6284	1	2034900			20623	10076	16821	16845	22982	22982					-0.02080673348905293
ISCFLARLF	9	Unmodified	_ISCFLARLF_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|248|2|anti-sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|248|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.2584228515625	2	535.296788	1068.57902	-2.5772	-0.0013796	4.0333	0.002159	1.4561	0.00077947	535.2987697514786	85.219	0.83922	83.728	83.357	84.196	-1.4906					24	16	2	0	0	0	0.027462	1	7416	7416		15.642	0	1	17129	+		20624	15918	16822	16846	22983	22983					0.047475813304799885
ISCFLARLF	9	Unmodified	_ISCFLARLF_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|248|2|anti-sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|248|2|anti-sense	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	535.296788	1068.57902	0.39292	0.00021033	1.8332	0.0009813	2.2261	0.0011916	535.2974952706495	86.293	0.49548	83.647	83.394	83.889	-2.6463	-0.040663	-0.0018509	NaN	15.642	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28165	+		20625	15918	16822	16846							0.047475813304799885
ISCFRTAN	8	Unmodified	_ISCFRTAN_					0	0	0			REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4	REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4	MULTI-SECPEP	OvCa99_classI_Rep5	1	455.7004699707031	2	456.22382	910.433086	-0.38692	-0.00017652	-3.4388	-0.0015689	-3.8257	-0.0017454	456.2221134204817	66.418	0.43941	66.418	66.136	66.575	0					15	10	2	0	0	0	0.028476	1	6122	6122		49.442	12.282	1	199020	+		20626	20503	16823	16847	22984	22984					-0.025713011855600598
ISCKEKLN	8	Unmodified	_ISCKEKLN_					0	0	0		ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	ENSG00000136051|ENST00000332180|WASHC4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	467.7721862792969	2	467.754953	933.495352	0.54028	0.00025272	-1.1151	-0.00052158	-0.5748	-0.00026887	467.7525872325799	89.441	0.69038	86.861	86.602	87.293	-2.5802					16	13	2	0	0	0	0.028476	1	7699	7699		63.306	15.649	1	17131			20627	4452	16824	16848	22985	22985					0.025944251627720405
ISCRSFTSP	9	Unmodified	_ISCRSFTSP_					0	0	0			REV__ENST00000555683.1_1_14:35005185-35005302:-|nuORF	REV__ENST00000555683.1_1_14:35005185-35005302:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.94317626953125	2	499.242209	996.469866	0.11211	5.5971E-05	-2.2185	-0.0011076	-2.1064	-0.0010516	499.24056560259515	81.019	1.0484	79.37	78.516	79.564	-1.6485					24	20	2	0	0	0	0.027279	1	6845	6845		71.296	7.9894	1	11099	+		20628	27546	16825	16849	22986	22986					-0.02851049359640001
ISDDFQMS	8	Unmodified	_ISDDFQMS_					0	0	0			REV__nc|ENSG00000156113|Q12791-2|KCNMA1	REV__nc|ENSG00000156113|Q12791-2|KCNMA1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.772705078125	2	471.6973	941.380048	1.0816	0.00051018	2.0911	0.00098638	3.1727	0.0014966	471.6983844372183	64.662	0.58254	61.177	60.969	61.552	-3.4854					15	11	2	0	0	0	0.028476	1	4658	4658		31.955	8.9124	1	33585	+		20629	28945	16826	16850	22987	22987					-0.0929872375886589
ISDDFQMS	8	Unmodified	_ISDDFQMS_					0	0	0			REV__nc|ENSG00000156113|Q12791-2|KCNMA1	REV__nc|ENSG00000156113|Q12791-2|KCNMA1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	471.6973	941.380048	0.012025	5.6722E-06	3.7305	0.0017596	3.7425	0.0017653	471.69886132994395	61.066	0.47299	61.066	60.859	61.332	0	-0.055477	0.00036419	NaN	31.955	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	477630	+		20630	28945	16826	16850							-0.0929872375886589
ISDDIPLQL	9	Unmodified	_ISDDIPLQL_					0	0	0		ZDBF2|p.G2318Rfs*12|1|0.09|ENSG00000204186|chr2:206311479-206311480|-/AGAGCTGTGGATATAAT|frameshift_variant;ENSG00000204186|ENST00000374423|ZDBF2	ZDBF2|p.G2318Rfs*12|1|0.09|ENSG00000204186|chr2:206311479-206311480|-/AGAGCTGTGGATATAAT|frameshift_variant	ZDBF2|p.G2318Rfs*12|1|0.09|ENSG00000204186|chr2:206311479-206311480|-/AGAGCTGTGGATATAAT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	507.280029296875	2	507.279315	1012.54408	-0.55965	-0.0002839	1.7446	0.000885	1.185	0.0006011	507.28005450607697	73.387	1.6842	70.899	70.579	72.264	-2.4873					61	33	4	0	0	0	0.42676	1	3578	3578		49.442	1.7842	1	325510			20631	8955	16827	16851	22988	22988					0.03830617003529824
ISDDIPLQL	9	Unmodified	_ISDDIPLQL_					0	0	0		ZDBF2|p.G2318Rfs*12|1|0.09|ENSG00000204186|chr2:206311479-206311480|-/AGAGCTGTGGATATAAT|frameshift_variant;ENSG00000204186|ENST00000374423|ZDBF2	ZDBF2|p.G2318Rfs*12|1|0.09|ENSG00000204186|chr2:206311479-206311480|-/AGAGCTGTGGATATAAT|frameshift_variant	ZDBF2|p.G2318Rfs*12|1|0.09|ENSG00000204186|chr2:206311479-206311480|-/AGAGCTGTGGATATAAT|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	507.279315	1012.54408	-0.49957	-0.00025342	1.7124	0.00086868	1.2129	0.00061526	507.27990699184676	73.27	1.7285	70.87	70.534	72.263	-2.3999	-0.014445	-1.3217E-05	NaN	49.442	71	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262420			20632	8955	16827	16851							0.03830617003529824
ISDDNARLP	9	Unmodified	_ISDDNARLP_					0	0	0		ENST00000576949.1_1_17:7133875-7137617:-|nuORF;ENST00000572285.5_1_17:7133284-7137536:-|nuORF;ENSG00000004975|ENST00000005340|DVL2	ENST00000576949.1_1_17:7133875-7137617:-|nuORF	ENST00000576949.1_1_17:7133875-7137617:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.3126525878906	2	500.756538	999.498523	1.9759	0.00098944	2.5859	0.0012949	4.5618	0.0022843	501.2583767022121	130.26	0.29723	128.78	128.66	128.96	-1.4779					6	5	2	0	0	0	0.027418	1	12503	12503		68.787	6.6794	1	6702.2			20633	840	16828	16852	22989	22989					-0.001246084588501617
ISDGVVLFID	10	Unmodified	_ISDGVVLFID_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;EFTUD2|p.R220C|1|0.55|ENSG00000108883|chr17:44879600-44879600|G/A|missense_variant	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.2724609375	2	539.294965	1076.57538	-0.1442	-7.7769E-05	-3.3596	-0.0018118	-3.5038	-0.0018896	539.2928735067984	89.679	1.5145	87.104	86.851	88.365	-2.575					41	29	2	0	0	0	0.026802	1	7776	7776		19.997	0	1	63263			20634	2685	16829	16853	22990	22990					0.040151900376031335
ISDHFPVEV	9	Unmodified	_ISDHFPVEV_					0	0	0		nc|ENSG00000167968|Q92874-2|DNASE1L2;ENSG00000167968|ENST00000320700|DNASE1L2	nc|ENSG00000167968|Q92874-2|DNASE1L2	nc|ENSG00000167968|Q92874-2|DNASE1L2	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.3154907226562	2	521.763832	1041.51311	-0.96016	-0.00050097	-3.1026	-0.0016188	-4.0628	-0.0021198	521.7621767214271	55.293	0.57624	55.293	55.064	55.641	0					25	13	3	0	0	0	0.027455	1	4526	4526		34.173	0	1	818120			20635	6852	16830	16854	22991	22991					-0.00598536310712916
ISDKSIKEIVL	11	Unmodified	_ISDKSIKEIVL_					0	0	0			REV__tr|A0A7D6VT85|A0A7D6VT85_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08070PE=4SV=1	REV__tr|A0A7D6VT85|A0A7D6VT85_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08070PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	415.58721923828125	3	415.586861	1243.73875	-0.52837	-0.00021958	1.3227	0.00054972	0.79438	0.00033013	415.5871992361253	53.239	1.788	50.425	50.084	51.872	-2.8139					82	35	4	0	0	0	0.68709	1	3607	3607		34.087	2.4522	1	237460	+		20636	31580	16831	16855	22992	22992					0.12663368088669813
ISDLLIEAI	9	Unmodified	_ISDLLIEAI_					0	0	0			REV__chr5:124062510-124213455|90|11.21|0.0|12.03|-|0|TE_info:L1PA4,L1PA4_dup4151,L1,LINE,donor,+,124213455,124219314|LINC01170,None|100	REV__chr5:124062510-124213455|90|11.21|0.0|12.03|-|0|TE_info:L1PA4,L1PA4_dup4151,L1,LINE,donor,+,124213455,124219314|LINC01170,None|100	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.7673034667969	2	493.792058	985.569563	1.3813	0.00068206	-4.0184	-0.0019843	-2.6372	-0.0013022	493.79024947513847	67.957	0.29034	64.467	64.284	64.574	-3.4902					8	5	2	0	0	0	0.027051	1	5029	5029		90.777	0	1	21484	+		20637	16055	16832	16856	22993	22993					0.07620091525961925
ISDLWRKF	8	Unmodified	_ISDLWRKF_					0	0	0		nc|ENSG00000164616|Q9UKT6|FBXL21P	nc|ENSG00000164616|Q9UKT6|FBXL21P	nc|ENSG00000164616|Q9UKT6|FBXL21P	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.7967529296875	2	532.798009	1063.58147	-1.0811	-0.000576	0.49498	0.00026373	-0.5861	-0.00031227	532.7980414448721	116.58	1.2384	115.22	114.84	116.08	-1.3645					51	23	3	0	0	0	0.61436	1	10872	10872		60.972	0.67798	1	276520			20638	15147	16833	16857	22994	22994					0.052217530597772566
ISDPSGSSGAL	11	Unmodified	_ISDPSGSSGAL_					0	0	0		ENST00000534991.3_1_21:33765503-33765725:+|nuORF	ENST00000534991.3_1_21:33765503-33765725:+|nuORF	ENST00000534991.3_1_21:33765503-33765725:+|nuORF	MSMS	OvCa99_classI_Rep5	1	495.74041748046875	2	495.740554	989.466554	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.314	1	37.314	36.814	37.814	0								0	0	0	0.12481	1	2036	2036		62.107	0	1				20639	13366	16834	16858	22995	22995					-0.028600209326441473
ISDVAKSLKV	10	Unmodified	_ISDVAKSLKV_					0	0	0		tr|A0A7D6VXB5|A0A7D6VXB5_9CLOTTetRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12225PE=4SV=1	tr|A0A7D6VXB5|A0A7D6VXB5_9CLOTTetRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12225PE=4SV=1	tr|A0A7D6VXB5|A0A7D6VXB5_9CLOTTetRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12225PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.802001953125	2	530.324057	1058.63356	-1.3364	-0.00070874	-1.6619	-0.00088135	-2.9983	-0.0015901	530.3232547248139	104.33	0.24914	103.76	103.62	103.87	-0.57639					6	4	2	0	0	0	0.026606	1	9663	9663		36.447	8.3653	1	8787.6			20640	35272	16835	16859	22996	22996					0.10658871682903737
ISDVPSPLD	9	Unmodified	_ISDVPSPLD_					0	0	0			REV__tr|A0A553SJR8|A0A553SJR8_NIACIpullulanaseOS=NialliacirculansOX=1397GN=pulAPE=4SV=1	REV__tr|A0A553SJR8|A0A553SJR8_NIACIpullulanaseOS=NialliacirculansOX=1397GN=pulAPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.75738525390625	2	471.742565	941.470577	2.1152	0.00099785	0.59008	0.00027837	2.7053	0.0012762	471.7428817243276	77.505	0.29137	77.505	77.422	77.714	0					8	6	2	0	0	0	0.027426	1	7816	7816		14.865	0	1	204650	+		20641	30034	16836	16860	22997	22997					-0.002499314389410756
ISEDFYNI	8	Unmodified	_ISEDFYNI_					0	0	0		tr|A0A7D7A5C6|A0A7D7A5C6_9CLOTRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_05375PE=3SV=1	tr|A0A7D7A5C6|A0A7D7A5C6_9CLOTRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_05375PE=3SV=1	tr|A0A7D7A5C6|A0A7D7A5C6_9CLOTRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_05375PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.2901611328125	2	500.73474	999.454927	-0.31555	-0.00015801	-3.4317	-0.0017183	-3.7472	-0.0018764	500.7327362878499	35.703	0.27944	35.703	35.566	35.846	0					8	5	2	0	0	0	0.028476	1	1836	1836		34.173	0	1	9096.3			20642	36165	16837	16861	22998	22998					-0.044822179560014774
ISEDWPLI	8	Unmodified	_ISEDWPLI_					0	0	0			REV__ENST00000406117.6_1_22:44322822-44359208:+|nuORF	REV__ENST00000406117.6_1_22:44322822-44359208:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.7781066894531	2	486.755475	971.496398	1.8219	0.00088683	1.555	0.00075689	3.3769	0.0016437	486.7572421682924	90.455	0.54259	89.153	88.879	89.422	-1.302					15	10	2	0	0	0	0.028476	1	7975	7975		96.048	19.201	1	9991.8	+		20643	17403	16838	16862	22999	22999					0.009509628033470108
ISEGNIYSV	9	Unmodified	_ISEGNIYSV_					0	0	0		tr|A0A7D6VN26|A0A7D6VN26_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15935PE=4SV=1	tr|A0A7D6VN26|A0A7D6VN26_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15935PE=4SV=1	tr|A0A7D6VN26|A0A7D6VN26_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15935PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.29119873046875	2	491.248015	980.481476	0.46314	0.00022752	-1.6441	-0.00080764	-1.1809	-0.00058012	491.24692097666434	61.477	0.66544	58.019	57.717	58.382	-3.4577					33	13	3	0	0	0	0.027411	1	4259	4259		45.972	8.1607	1	175230			20644	34677	16839	16863	23000	23000					-0.009545290646656213
ISEISKLIV	9	Unmodified	_ISEISKLIV_					0	0	0		ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.30340576171875	2	501.3157	1000.61685	-1.1875	-0.00059531	-1.1578	-0.00058045	-2.3453	-0.0011758	501.314979534037	100.99	1.1627	98.723	98.446	99.609	-2.2665					43	23	2	0	0	0	0.027411	1	9033	9033		84.916	2.675	1	122000			20645	5345	16840	16864	23001	23001					0.11656370796958981
ISEKRSLIV	9	Unmodified	_ISEKRSLIV_					0	0	0			REV__tr|A0A7D6ZYG4|A0A7D6ZYG4_9CLOTSelenium-dependentxanthinedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=xdhPE=3SV=1	REV__tr|A0A7D6ZYG4|A0A7D6ZYG4_9CLOTSelenium-dependentxanthinedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=xdhPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	522.823486328125	2	522.824224	1043.63389	0.6555	0.00034271	-1.635	-0.00085481	-0.97949	-0.0005121	522.8233249021611	80.518	1.853	78.823	78.124	79.977	-1.6951					130	36	6	0	0	0	0.21231	2	6815	6815;6834		74.255	5.4204	1	1770100	+		20646	32371	16841	16865	23002;23003	23002					0.1138229140274234
ISEKRSLIV	9	Unmodified	_ISEKRSLIV_					0	0	0			REV__tr|A0A7D6ZYG4|A0A7D6ZYG4_9CLOTSelenium-dependentxanthinedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=xdhPE=3SV=1	REV__tr|A0A7D6ZYG4|A0A7D6ZYG4_9CLOTSelenium-dependentxanthinedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=xdhPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	522.8247680664062	2	522.824224	1043.63389	-0.61715	-0.00032266	-0.12179	-6.3677E-05	-0.73894	-0.00038634	522.8241473129543	81.355	1.6752	79.033	78.337	80.012	-2.3226					150	32	6	0	0	0	0.14855	1	4538	4538		85.161	5.4482	1	2046900	+		20647	32371	16841	16865	23004	23004					0.1138229140274234
ISELILCQN	9	Unmodified	_ISELILCQN_					0	0	0		ENST00000534425.5_1_11:67431830-67435009:-|nuORF	ENST00000534425.5_1_11:67431830-67435009:-|nuORF	ENST00000534425.5_1_11:67431830-67435009:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.277099609375	2	516.773342	1031.53213	1.4083	0.00072777	-0.25558	-0.00013208	1.1527	0.00059569	516.7735477111692	93.186	0.50152	93.186	92.845	93.346	0					21	11	3	0	0	0	0.027418	1	10062	10062		68.787	0	1	882280			20648	13356	16842	16866	23005	23005					0.017626769886874172
ISEMLLRN	8	Unmodified	_ISEMLLRN_					0	0	0		nc|ENSG00000160505|Q96MN2-2|NLRP4;nc|ENSG00000160505|Q96MN2-3|NLRP4;ENSG00000160505|ENST00000301295|NLRP4	nc|ENSG00000160505|Q96MN2-2|NLRP4	nc|ENSG00000160505|Q96MN2-2|NLRP4	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.27032470703125	2	488.268227	974.521901	-0.20857	-0.00010184	0.4875	0.00023803	0.27893	0.00013619	488.2684903925525	76.711	1.8328	73.772	73.55	75.383	-2.9389					50	37	2	0	0	0	0.53531	1	6125	6125		73.975	5.1879	1	552500			20649	6069	16843	16867	23006	23006					0.03362114054118592
ISENQEAQN	9	Unmodified	_ISENQEAQN_					0	0	0		nc|ENSG00000114757|Q8IYB4-8|PEX5L;nc|ENSG00000114757|Q8IYB4-7|PEX5L;nc|ENSG00000114757|Q8IYB4-4|PEX5L;nc|ENSG00000114757|Q8IYB4-5|PEX5L;nc|ENSG00000114757|Q8IYB4-3|PEX5L;nc|ENSG00000114757|Q8IYB4-6|PEX5L;nc|ENSG00000114757|Q8IYB4-2|PEX5L;ENSG00000114757|ENST00000467460|PEX5L	nc|ENSG00000114757|Q8IYB4-8|PEX5L	nc|ENSG00000114757|Q8IYB4-8|PEX5L	MULTI-SECPEP	OvCa9_classI_Rep3	3	516.8265380859375	2	516.73326	1031.45197	0.0041703	2.1549E-06	-3.2372	-0.0016728	-3.233	-0.0016706	516.7327549869784	94.598	0.4545	92.703	92.409	92.864	-1.8956					12	8	2	0	0	0	0.027295	1	6095	6095		54.776	0	1	17626			20650	3038	16844	16868	23007	23007					-0.06250093080802799
ISEQAVKASR	10	Unmodified	_ISEQAVKASR_					0	0	0		DLGAP1-GNAS|20|fusion;DLGAP1-GNAS|17|fusion;DLGAP1-GNAS|18|fusion;DLGAP1-GNAS|19|fusion;nc|ENSG00000170579|O14490-7|DLGAP1;ENSG00000170579|ENST00000315677|DLGAP1;DLGAP1|p.D323*|1|0.2|ENSG00000170579|chr18:3814264-3814265|-/A|frameshift_variant	DLGAP1-GNAS|20|fusion	DLGAP1-GNAS|20|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	544.8089599609375	2	544.806562	1087.59857	-0.34732	-0.00018922	3.2478	0.0017694	2.9005	0.0015802	544.807894746868	78.293	2.6731	76.553	75.205	77.878	-1.7398					144	51	4	0	0	0	0.39718	1	6552	6552		68.846	3.043	1	701020			20651	739	16845	16869	23008	23008					0.05827628874953916
ISETYRQL	8	Unmodified	_ISETYRQL_					0	0	0			REV__tr|A0A7D6VN13|A0A7D6VN13_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_15725PE=4SV=1	REV__tr|A0A7D6VN13|A0A7D6VN13_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_15725PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	505.27362060546875	2	505.269281	1008.52401	0.13342	6.7412E-05	-0.33999	-0.00017179	-0.20657	-0.00010437	505.26895424048547	62.687	0.6815	62.687	62.418	63.1	0					55	16	5	0	0	0	0.57734	1	5617	5617		68.787	2.3575	1	4043500	+		20652	31154	16846	16870	23009	23009					0.02008866063579262
ISEVIRSSILA	11	Unmodified	_ISEVIRSSILA_					0	0	0		tr|A0A7D6W2S1|A0A7D6W2S1_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07155PE=3SV=1	tr|A0A7D6W2S1|A0A7D6W2S1_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07155PE=3SV=1	tr|A0A7D6W2S1|A0A7D6W2S1_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07155PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	594.2996826171875	2	594.353345	1186.69214	0.21559	0.00012814	-1.0481	-0.00062294	-0.8325	-0.0004948	594.3512661046559	76.369	0.23247	73.43	73.318	73.55	-2.9389					9	4	3	0	0	0	0.020983	1	6055	6055		101.25	39.145	1	18263			20653	35436	16847	16871	23010	23010					0.10625928257400119
ISEYKSAIQ	9	Unmodified	_ISEYKSAIQ_					0	0	0		nc|ENSG00000165288|Q6RI45-2|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3	nc|ENSG00000165288|Q6RI45-2|BRWD3	nc|ENSG00000165288|Q6RI45-2|BRWD3	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.7667846679688	2	519.776939	1037.53933	-0.50328	-0.00026159	0.04528	2.3536E-05	-0.458	-0.00023806	519.7768395446219	62.297	1.9726	58.839	58.057	60.029	-3.4577					89	40	3	0	0	0	0.61365	1	4361	4361		30.318	1.1682	1	1427500			20654	6548	16848	16872	23011	23011					0.022057328607616
ISFCSQGIRH	10	Unmodified	_ISFCSQGIRH_					0	0	0		ENSG00000065882|ENST00000698857|TBC1D1;nc|ENSG00000065882|Q86TI0|TBC1D1;nc|ENSG00000065882|Q86TI0-2|TBC1D1;ENST00000491553.1_1_4:38016582-38022367:+|nuORF	ENSG00000065882|ENST00000698857|TBC1D1	ENSG00000065882|ENST00000698857|TBC1D1	MULTI-MSMS	OvCa9_classI_Rep4_	4	574.2868041992188	2	574.287482	1146.56041	-0.11051	-6.3463E-05	0.32604	0.00018724	0.21553	0.00012378	574.2875228243062	112.75	1.159	111.23	110.58	111.74	-1.5111					49	22	3	0	0	0	0.75313	1	10439	10439		24.519	0	1	212890			20655	1338	16849	16873	23012	23012					-0.007005803113543152
ISFDEFVL	8	Unmodified	_ISFDEFVL_					0	0	0		ENSG00000182898|ENST00000368806|TCHHL1	ENSG00000182898|ENST00000368806|TCHHL1	ENSG00000182898|ENST00000368806|TCHHL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.2671203613281	2	485.250026	968.485499	-1.2205	-0.00059227	-3.0092	-0.0014602	-4.2298	-0.0020525	485.24875585934404	72.283	0.58559	68.826	68.656	69.241	-3.4563					16	11	2	0	0	0	0.028476	1	5575	5575		60.294	16.177	1	20510			20656	8034	16850	16874	23013	23013					-4.395709538584924E-06
ISFFYFTL	8	Unmodified	_ISFFYFTL_					0	0	0		Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|137|1|anti-sense	Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|137|1|anti-sense	Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|137|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.2515258789062	2	519.270761	1036.52697	2.0899	0.0010852	2.3302	0.00121	4.4201	0.0022952	519.2717669666446	100.65	0.82691	100.65	100.32	101.15	0					45	19	3	0	0	0	0.028476	1	11141	11141		30.504	0	1	3281800			20657	14377	16851	16875	23014	23014					0.010167411883685418
ISFFYFTL	8	Unmodified	_ISFFYFTL_					0	0	0		Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|137|1|anti-sense	Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|137|1|anti-sense	Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|137|1|anti-sense	MULTI-MATCH	OvCa9_classI_Rep3	3		2	519.270761	1036.52697	-0.47323	-0.00024573	6.4123	0.0033297	5.9391	0.003084	519.2736188628049	102.01	0.83801	100.49	99.951	100.79	-1.5211	0.030307	0.0024021	NaN	37.159	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24018			20658	14377	16851	16875							0.010167411883685418
ISFFYFTL	8	Unmodified	_ISFFYFTL_					0	0	0		Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|137|1|anti-sense	Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|137|1|anti-sense	Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|137|1|anti-sense	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	519.270761	1036.52697	-0.38178	-0.00019825	6.152	0.0031946	5.7703	0.0029963	519.2737630719605	102.48	0.89449	100.28	99.937	100.83	-2.1994	-0.18088	0.0021318	NaN	37.159	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25538			20659	14377	16851	16875							0.010167411883685418
ISFGKKFV	8	Unmodified	_ISFGKKFV_					0	0	0			REV__ENSG00000173267|ENST00000372017|SNCG	REV__ENSG00000173267|ENST00000372017|SNCG	MULTI-MSMS	OvCa9_classI_Rep2	2	463.27783203125	2	463.278921	924.543289	-0.62606	-0.00029004	-3.9055	-0.0018093	-4.5316	-0.0020994	463.27705603624554	74.992	1.8677	73.021	72.376	74.244	-1.9711					93	35	4	0	0	0	0.50674	1	6150	6150		76.847	0	1	495750	+		20660	21762	16852	16876	23015	23015					0.07799867145126882
ISFHRLPKKDN	11	Unmodified	_ISFHRLPKKDN_					0	0	0		ENSG00000184436|ENST00000215742|THAP7	ENSG00000184436|ENST00000215742|THAP7	ENSG00000184436|ENST00000215742|THAP7	MULTI-SECPEP	OvCa99_classI_Rep5	1	453.2484436035156	3	452.257849	1353.75172	-0.17501	-7.9148E-05	-0.18204	-8.233E-05	-0.35705	-0.00016148	452.25759648262357	50.789	0.83197	50.789	50.332	51.164	0					43	18	3	0	0	0	0.026145	1	3846	3846		8.7993	0	1	198200			20661	8157	16853	16877	23016	23016					0.08899243991436379
ISFHSWTTL	9	Unmodified	_ISFHSWTTL_					0	0	0		ENST00000291232.4_2_22:42319190-42319607:-|nuORF	ENST00000291232.4_2_22:42319190-42319607:-|nuORF	ENST00000291232.4_2_22:42319190-42319607:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	546.7994995117188	2	546.279649	1090.54475	0.91384	0.00049921	-0.90939	-0.00049678	0.0044504	2.4311E-06	546.2792482908762	121.35	0.73332	120.32	120.07	120.8	-1.0271					19	13	2	0	0	0	0.027462	1	9268	9268		47.916	25.956	1	30513			20662	10093	16854	16878	23017	23017					0.003094564432331026
ISFHVLLLV	9	Unmodified	_ISFHVLLLV_					0	0	0			REV__nc|ENSG00000008294|O60271-9|SPAG9	REV__nc|ENSG00000008294|O60271-9|SPAG9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.291015625	2	520.828778	1039.643	-0.5479	-0.00028536	-2.2544	-0.0011742	-2.8023	-0.0014595	520.8276139271305	102.9	1.0441	100.7	100.36	101.4	-2.1994					30	19	2	0	0	0	0.027449	1	9323	9323		40.573	2.7611	1	50142	+		20663	28704	16855	16879	23018	23018					0.12476684759076306
ISFIMGELN	9	Unmodified	_ISFIMGELN_					0	0	0			REV__tr|A0A7D7A6W0|A0A7D7A6W0_9CLOTDUF998domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09540PE=4SV=1	REV__tr|A0A7D7A6W0|A0A7D7A6W0_9CLOTDUF998domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09540PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.2833251953125	2	512.26261	1022.51067	2.5695	0.0013162	-1.3027	-0.00066735	1.2667	0.00064889	512.2619598265957	94.073	0.42351	94.073	93.883	94.306	0					15	9	2	0	0	0	0.027462	1	10205	10205		26.693	4.733	1	633440	+		20664	32666	16856	16880	23019	23019					0.00031291959965074057
ISFKAVNKVN	10	Unmodified	_ISFKAVNKVN_					0	0	0			REV__ENST00000343776.9_1_1:227842171-227842369:+|nuORF	REV__ENST00000343776.9_1_1:227842171-227842369:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	560.3289184570312	2	560.329673	1118.64479	2.7113	0.0015192	-2.2854	-0.0012806	0.42595	0.00023867	560.3293901112767	110.58	0.93267	110.58	110.22	111.16	0					47	20	3	0	0	0	0.58067	1	12553	12553		44.377	0.26039	1	686710	+		20665	24672	16857	16881	23020	23020					0.09021693777026485
ISFKLKENK	9	Unmodified	_ISFKLKENK_					0	0	0			REV__ENSG00000186088|ENST00000257626|GSAP	REV__ENSG00000186088|ENST00000257626|GSAP	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.8153076171875	2	553.832049	1105.64954	-0.50737	-0.000281	3.3433	0.0018517	2.836	0.0015707	553.832060248718	59.837	0.11343	59.837	59.766	59.879	0					4	2	2	0	0	0	0.027462	1	5177	5177		34.173	12.213	1	83284	+		20666	22554	16858	16882	23021	23021					0.10094577919812764
ISFKPNKFVK	10	Unmodified	_ISFKPNKFVK_					0	0	0			REV__ENSG00000168925|ENST00000361017|CTRB1	REV__ENSG00000168925|ENST00000361017|CTRB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	403.235595703125	3	403.24477	1206.71248	0.019868	8.0117E-06	2.4639	0.00099357	2.4838	0.0010016	403.24604242444525	43.787	0.21461	43.787	43.651	43.866	0					9	4	3	0	0	0	0.027117	1	2906	2906		21.686	0.8486	1	32186	+		20667	21419	16859	16883	23022	23022					0.11739143707836774
ISFLFISAAV	10	Unmodified	_ISFLFISAAV_					0	0	0		ENSG00000205639|ENST00000338315|MFSD2B	ENSG00000205639|ENST00000338315|MFSD2B	ENSG00000205639|ENST00000338315|MFSD2B	MULTI-MSMS	OvCa9_classI_Rep2	2	534.3118286132812	2	534.310418	1066.60628	-0.66808	-0.00035696	1.1138	0.00059514	0.44577	0.00023818	534.3108662098824	124.05	1.2329	123.82	123.34	124.57	-0.23193					58	24	4	0	0	0	0.49558	1	12067	12067		54.776	0.053964	1	92890			20668	9078	16860	16884	23023	23023					0.07564388142486678
ISFLFISAAV	10	Unmodified	_ISFLFISAAV_					0	0	0		ENSG00000205639|ENST00000338315|MFSD2B	ENSG00000205639|ENST00000338315|MFSD2B	ENSG00000205639|ENST00000338315|MFSD2B	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.3103637695312	2	534.310418	1066.60628	-2.6976	-0.0014413	2.9376	0.0015696	0.24005	0.00012826	534.3118641663157	125.31	1.0556	123.9	123.62	124.68	-1.4143					48	20	3	0	0	0	0.59703	1	11925	11925		42.396	5.237	1	114010			20669	9078	16860	16884	23024	23024					0.07564388142486678
ISFLGITT	8	Unmodified	_ISFLGITT_					0	0	0			REV__tr|A0A553SFD2|A0A553SFD2_NIACIDUF2619domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_08685PE=4SV=1	REV__tr|A0A553SFD2|A0A553SFD2_NIACIDUF2619domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_08685PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	426.2460632324219	2	426.247286	850.48002	-0.93249	-0.00039747	-2.0488	-0.0008733	-2.9813	-0.0012708	426.2463036759244	138.33	1.7168	138.1	137.59	139.3	-0.22696					83	34	3	0	0	0	0.75915	1	13871	13871		20.482	0	1	161940	+		20670	29564	16861	16885	23025	23025					0.04879881637214112
ISFLHILIP	9	Unmodified	_ISFLHILIP_					0	0	0			REV__ENST00000369232.2_1_6:99949817-99958096:-|nuORF	REV__ENST00000369232.2_1_6:99949817-99958096:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	526.8259887695312	2	526.828778	1051.643	-1.2645	-0.00066616	-3.537	-0.0018634	-4.8015	-0.0025295	526.8270166019133	100.56	1.3878	99.727	99.36	100.75	-0.83051					64	27	4	0	0	0	0.42057	1	9221	9221		50.025	2.1089	1	388760	+		20671	24935	16862	16886	23026	23026					0.11924684759082993
ISFLHILIP	9	Unmodified	_ISFLHILIP_					0	0	0			REV__ENST00000369232.2_1_6:99949817-99958096:-|nuORF	REV__ENST00000369232.2_1_6:99949817-99958096:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.349365234375	2	526.828778	1051.643	-0.80632	-0.00042479	-3.6786	-0.001938	-4.4849	-0.0023628	526.8267969979132	102.19	1.9842	99.99	99.471	101.46	-2.1994					89	36	4	0	0	0	0.027462	1	9219	9219		40.573	1.7665	1	339770	+		20672	24935	16862	16886	23027	23027					0.11924684759082993
ISFLKTLSLK	10	Unmodified	_ISFLKTLSLK_					0	0	0		nc|ENSG00000038532|Q2KHT3-2|CLEC16A;CLEC16A|p.Q832Rfs*57|1|0.03|ENSG00000038532|chr16:11126000-11126000|A/-|frameshift_variant;ENSG00000038532|ENST00000409790|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.3118896484375	2	575.365724	1148.7169	-0.86618	-0.00049837	-1.4375	-0.0008271	-2.3037	-0.0013255	575.3636294280269	99.227	0.25104	97.542	97.373	97.624	-1.685					6	4	2	0	0	0	0.026891	1	6652	6652		47.657	19.775	1	12195			20673	14868	16863	16887	23028	23028					0.14848608130751018
ISFLSTLKKN	10	Unmodified	_ISFLSTLKKN_					0	0	0		ENST00000453424.6_1_10:45952730-45952829:-|nuORF	ENST00000453424.6_1_10:45952730-45952829:-|nuORF	ENST00000453424.6_1_10:45952730-45952829:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.3111572265625	2	575.845156	1149.67576	-1.1875	-0.00068379	1.7241	0.00099284	0.53668	0.00030905	575.8449793852019	99.636	0.30942	97.311	97.108	97.417	-2.3253					7	5	2	0	0	0	0.026679	1	8882	8882		93.195	26.766	1	13203			20674	12072	16864	16888	23029	23029					0.10690847091291289
ISFNKSAKS	9	Unmodified	_ISFNKSAKS_					0	0	0			REV__nc|ENSG00000123473|Q15468|STIL	REV__nc|ENSG00000123473|Q15468|STIL	MULTI-MSMS	OvCa99_classI_Rep5	1	491.2699279785156	2	491.271824	980.529095	-0.48775	-0.00023962	-2.8809	-0.0014153	-3.3687	-0.0016549	491.27037911350135	23.572	0.20056	23.572	23.447	23.647	0					6	3	2	0	0	0	0.69123	1	350	350		20.947	0.4651	1	24140	+		20675	18643	16865	16889	23030	23030					0.038051699261814065
ISFPNMASD	9	Unmodified	_ISFPNMASD_					0	0	0		ENSG00000182173|ENST00000333213|TSEN54	ENSG00000182173|ENST00000333213|TSEN54	ENSG00000182173|ENST00000333213|TSEN54	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.26544189453125	2	491.220943	980.427332	0.3021	0.0001484	-4.4044	-0.0021635	-4.1023	-0.0020151	491.2183545325951	64.148	0.2445	60.673	60.539	60.784	-3.475					6	4	2	0	0	0	0.027462	1	4550	4550		25.574	0	1	12261			20676	7977	16866	16890	23031	23031					-0.06366444487889567
ISFTVLVMT	9	Unmodified	_ISFTVLVMT_					0	0	0			REV__ENSG00000117971|ENST00000261751|CHRNB4	REV__ENSG00000117971|ENST00000261751|CHRNB4	MULTI-MSMS	OvCa99_classI_Rep5	1	505.7847595214844	2	505.783179	1009.5518	0.029047	1.4691E-05	3.4743	0.0017572	3.5034	0.0017719	505.7847787658441	31.099	0.48037	31.099	30.979	31.46	0					20	9	4	0	0	0	0.36502	1	1256	1256		55.504	7.5886	1	254090	+		20677	18374	16867	16891	23032	23032					0.047410529994408535
ISFVHLCFIK	10	Carbamidomethyl (C)	_ISFVHLC(Carbamidomethyl (C))FIK_	ISFVHLC(1)FIK		ISFVHLC(77)FIK		0	1	0			REV__ENST00000454887.1_1_3:12892173-12913270:+|nuORF	REV__ENST00000454887.1_1_3:12892173-12913270:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	632.34814453125	2	632.349551	1262.68455	-1.4922	-0.00094358	3.314	0.0020956	1.8218	0.001152	632.3515070248368	99.419	0.69532	98.588	98.268	98.964	-0.83051					41	13	5	0	0	0	0.32926	1	9069	9069		77.318	7.69	1	442020	+		20678	20911	16868	16892	23033	23033	232				0.06371497456098041
ISGAITSKLN	10	Unmodified	_ISGAITSKLN_					0	0	0			REV__tr|A0A553SMI0|A0A553SMI0_NIACIAbrBfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22490PE=4SV=1	REV__tr|A0A553SMI0|A0A553SMI0_NIACIAbrBfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22490PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.2918701171875	2	502.292756	1002.57096	-0.14149	-7.1071E-05	3.9924	0.0020053	3.8509	0.0019343	502.29452806371427	122.65	1.1894	121.28	120.96	122.15	-1.3666					60	23	4	0	0	0	0.41408	1	11602	11602		66.429	2.222	1	102310	+		20679	30332	16869	16893	23034	23034					0.06977725614706287
ISGASCTTNC	10	Unmodified	_ISGASCTTNC_					0	0	0		tr|A0A553SJ42|A0A553SJ42_NIACIGlyceraldehyde-3-phosphatedehydrogenaseOS=NialliacirculansOX=1397GN=gapPE=3SV=1	tr|A0A553SJ42|A0A553SJ42_NIACIGlyceraldehyde-3-phosphatedehydrogenaseOS=NialliacirculansOX=1397GN=gapPE=3SV=1	tr|A0A553SJ42|A0A553SJ42_NIACIGlyceraldehyde-3-phosphatedehydrogenaseOS=NialliacirculansOX=1397GN=gapPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	477.95806884765625	2	478.694235	955.373916	-6.1086	-0.0029242	3.8529	0.0018444	-2.2557	-0.0010798	478.6967172049658	158.8	0.62497	157.53	157.35	157.97	-1.267					27	11	4	0	0	0	0.026931	1	13734	13734		17.468	5.957	1	23456			20680	33461	16870	16894	23035	23035					-0.10555565262052369
ISGEQSTEGSF	11	Unmodified	_ISGEQSTEGSF_					0	0	0		ENSG00000049323|ENST00000404816|LTBP1;nc|ENSG00000049323|Q14766-4|LTBP1	ENSG00000049323|ENST00000404816|LTBP1	ENSG00000049323|ENST00000404816|LTBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	571.2549438476562	2	571.254025	1140.4935	-0.93689	-0.0005352	1.9467	0.001112	1.0098	0.00057684	571.2549925120292	36.465	0.62782	36.465	36.257	36.885	0					26	13	4	0	0	0	0.63561	1	1920	1920		41.427	0.34655	1	642540			20681	1168	16871	16895	23036	23036					-0.07112957112144613
ISGFFGIFF	9	Unmodified	_ISGFFGIFF_					0	0	0			REV__ENSG00000168329|ENST00000399220|CX3CR1	REV__ENSG00000168329|ENST00000399220|CX3CR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.2975463867188	2	517.770929	1033.5273	1.7076	0.00088416	3.1667	0.0016396	4.8743	0.0025238	517.7725215199131	117.79	0.46121	117.79	117.6	118.06	0					15	9	2	0	0	0	0.027255	1	13504	13504		47.916	10.756	1	111770	+		20682	21363	16872	16896	23037	23037					0.011881609082593059
ISGFLFVVGY	10	Unmodified	_ISGFLFVVGY_					0	0	0			REV__sp|F5HF62|US28_HCMVMEnvelopeproteinUS28OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US28PE=3SV=1	REV__sp|F5HF62|US28_HCMVMEnvelopeproteinUS28OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US28PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	552.27783203125	2	551.302593	1100.59063	0.30306	0.00016708	-4.2416	-0.0023384	-3.9385	-0.0021713	551.3000373129003	113.56	1.5777	112.49	112.1	113.68	-1.0753					64	30	4	0	0	0	0.027177	1	8462	8462		18.324	0	1	140680	+		20683	29410	16873	16897	23038	23038					0.044361016254924834
ISGGRLLIR	9	Unmodified	_ISGGRLLIR_					0	0	0		ENSG00000115423|ENST00000389394|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.27764892578125	2	492.819276	983.623999	1.2627	0.00062227	-1.7006	-0.00083811	-0.43797	-0.00021584	492.8182765629011	62.857	1.3901	59.823	59.313	60.703	-3.0339					41	27	2	0	0	0	0.027462	1	2257	2257		19.997	0	1	12107			20684	3097	16874	16898	23039	23039					0.1315314818804154
ISGIAMLMV	9	Unmodified	_ISGIAMLMV_					0	0	0			REV__tr|A0A7D6VXE2|A0A7D6VXE2_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12540PE=4SV=1	REV__tr|A0A7D6VXE2|A0A7D6VXE2_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12540PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.7732849121094	2	467.758649	933.502746	-0.33017	-0.00015444	-1.7176	-0.00080341	-2.0478	-0.00095785	467.7580331203555	54.432	0.25463	54.432	54.293	54.547	0					8	5	2	0	0	0	0.027176	1	4385	4385		60.294	0	1	105430	+		20685	31775	16875	16899	23040	23040					0.033334414388491496
ISGIPRRV	8	Unmodified	_ISGIPRRV_					0	0	0		nc|ENSG00000188158|Q6T4R5-4|NHS;nc|ENSG00000188158|Q6T4R5-3|NHS;nc|ENSG00000188158|Q6T4R5-2|NHS;ENSG00000188158|ENST00000676302|NHS	nc|ENSG00000188158|Q6T4R5-4|NHS	nc|ENSG00000188158|Q6T4R5-4|NHS	MULTI-MSMS	OvCa99_classI_Rep5	1	449.28656005859375	2	449.285069	896.555585	0.51923	0.00023328	-0.66322	-0.00029797	-0.14399	-6.4692E-05	449.28464317738195	52.895	1.1643	52.895	52.61	53.774	0					60	26	4	0	0	0	0.66057	1	4158	4158		51.335	3.6781	1	6346400			20686	8455	16876	16900	23041	23041					0.10316903608179473
ISGKEMRFF	9	Unmodified	_ISGKEMRFF_					0	0	0			REV__ENSG00000129450|ENST00000250360|SIGLEC9	REV__ENSG00000129450|ENST00000250360|SIGLEC9	MULTI-SECPEP	OvCa9_classI_Rep3	3	557.8106079101562	2	557.789327	1113.5641	-3.7251	-0.0020778	4.3148	0.0024067	0.58974	0.00032895	558.2925369197661	145.5	0.49841	144.53	144.34	144.84	-0.97299					12	9	2	0	0	0	0.027462	1	12215	12215		23.042	8.1776	1	13375	+		20687	18898	16877	16901	23042	23042					0.01186089462498785
ISGKRDKSEE	10	Unmodified	_ISGKRDKSEE_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP;DSP|p.R1308Pfs*18|1|0.56|ENSG00000096696|chr6:7580109-7580110|-/C|frameshift_variant;DSP|p.R1725Qfs*9|1|0.06|ENSG00000096696|chr6:7581363-7581364|-/A|frameshift_variant	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	574.3117065429688	2	574.798934	1147.58332	-1.4787	-0.00084997	-3.9782	-0.0022867	-5.4569	-0.0031366	574.795243240914	44.627	0.4557	41.588	41.464	41.919	-3.0385					9	8	2	0	0	0	0.026956	1	2242	2242		34.173	2.6427	1	13711			20688	1949	16878	16902	23043	23043					0.015427172870886352
ISGLGPRNL	9	Unmodified	_ISGLGPRNL_					0	0	0			REV__ENSG00000175311|ENST00000311620|ANKS4B	REV__ENSG00000175311|ENST00000311620|ANKS4B	MULTI-SECPEP	OvCa99_classI_Rep5	1	463.26336669921875	2	463.774534	925.534515	-1.175	-0.00054496	2.0127	0.00093343	0.83764	0.00038848	463.77510407629273	43.723	0.47415	43.723	43.521	43.995	0					26	10	4	0	0	0	0.027462	1	2941	2941		27.882	10.517	1	240730	+		20689	21891	16879	16903	23044	23044					0.06876893508649573
ISGLVGPLSTI	11	Unmodified	_ISGLVGPLSTI_					0	0	0		OR2A7|p.Q226Rfs*21|1|0.07|ENSG00000243896|chr7:144258953-144258953|G/-|frameshift_variant;ENSG00000243896|ENST00000641841|OR2A7;ENSG00000180658|ENST00000315453|OR2A4	OR2A7|p.Q226Rfs*21|1|0.07|ENSG00000243896|chr7:144258953-144258953|G/-|frameshift_variant	OR2A7|p.Q226Rfs*21|1|0.07|ENSG00000243896|chr7:144258953-144258953|G/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.7526245117188	2	528.818607	1055.62266	0.50031	0.00026457	2.6656	0.0014096	3.1659	0.0016742	528.8199856981299	141.25	0.3053	141.25	141.03	141.34	0					8	5	2	0	0	0	0.02596	1	16491	16491		8.6937	0.45861	1	15594			20690	7880	16880	16904	23045	23045					0.09707469308614236
ISGRDFILID	10	Unmodified	_ISGRDFILID_					0	0	0			REV__ENST00000373903.1_1_9:123586619-123589169:-|nuORF	REV__ENST00000373903.1_1_9:123586619-123589169:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.9093627929688	2	574.819138	1147.62372	1.2952	0.0007445	-0.95644	-0.00054978	0.33874	0.00019472	575.319490031969	112.03	0.41594	112.03	111.93	112.34	0					10	8	2	0	0	0	0.026493	1	12742	12742		54.776	5.3348	1	108490	+		20691	25052	16881	16905	23046	23046					0.055816836775193224
ISGRGKIDP	9	Unmodified	_ISGRGKIDP_					0	0	0			REV__ENST00000521792.2_1_8:43125532-43126024:-|nuORF	REV__ENST00000521792.2_1_8:43125532-43126024:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	471.7704162597656	2	471.771991	941.529429	-0.3694	-0.00017427	0.43984	0.00020751	0.070441	3.3232E-05	471.772087375345	64.335	1.9301	61.61	60.862	62.792	-2.7246					82	36	3	0	0	0	0.22961	1	4908	4908		71.296	5.4925	1	448050	+		20692	27075	16882	16906	23047	23047					0.056325896460293734
ISGRGKIDP	9	Unmodified	_ISGRGKIDP_					0	0	0			REV__ENST00000521792.2_1_8:43125532-43126024:-|nuORF	REV__ENST00000521792.2_1_8:43125532-43126024:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	471.771991	941.529429	1.8711	0.00088274	-3.3266	-0.0015694	-1.4555	-0.00068665	471.7701240030756	64.21	0.15266	61.217	61.14	61.293	-2.9933	-0.23486	-0.0025961	NaN	71.296	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5760.6	+		20693	27075	16882	16906							0.056325896460293734
ISGRLKTSP	9	Unmodified	_ISGRLKTSP_					0	0	0		nc|ENSG00000162946|Q9NRI5-6|DISC1	nc|ENSG00000162946|Q9NRI5-6|DISC1	nc|ENSG00000162946|Q9NRI5-6|DISC1	MULTI-MSMS	OvCa9_classI_Rep2	2	479.7864074707031	2	479.787641	957.56073	-0.50284	-0.00024126	-0.32421	-0.00015555	-0.82705	-0.00039681	479.7875589917212	77.574	3.5714	75.784	75.103	78.674	-1.7894					199	69	4	0	0	0	0.068524	3	6495	6495;6521;6528		108.09	20.333	1	2386800			20694	15135	16883	16907	23048;23049;23050	23048					0.08025162680155518
ISGRLKTSP	9	Unmodified	_ISGRLKTSP_					0	0	0		nc|ENSG00000162946|Q9NRI5-6|DISC1	nc|ENSG00000162946|Q9NRI5-6|DISC1	nc|ENSG00000162946|Q9NRI5-6|DISC1	MULTI-MSMS	OvCa9_classI_Rep3	3	479.7879333496094	2	479.787641	957.56073	-0.2694	-0.00012926	-0.52811	-0.00025338	-0.79751	-0.00038264	479.787479769534	77.778	3.6765	75.425	74.734	78.41	-2.3527					193	72	5	0	0	0	0.14998	1	4159	4159		84.916	2.165	1	4769100			20695	15135	16883	16907	23051	23051					0.08025162680155518
ISGRLKTSP	9	Unmodified	_ISGRLKTSP_					0	0	0		nc|ENSG00000162946|Q9NRI5-6|DISC1	nc|ENSG00000162946|Q9NRI5-6|DISC1	nc|ENSG00000162946|Q9NRI5-6|DISC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.7875061035156	2	479.787641	957.56073	0.085234	4.0894E-05	-1.0035	-0.00048146	-0.91824	-0.00044056	479.78721248781835	78.492	3.0769	75.676	75.409	78.486	-2.8165					164	63	4	0	0	0	0.28934	1	6425	6425		64.207	5.9773	1	5489700			20696	15135	16883	16907	23052	23052					0.08025162680155518
ISGTKAIF	8	Unmodified	_ISGTKAIF_					0	0	0		nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.5599670410156	2	418.747453	835.480354	0.2611	0.00010933	1.7741	0.0007429	2.0352	0.00085223	418.7481517279531	42.961	0.60493	42.961	42.665	43.27	0					22	13	2	0	0	0	0.028476	1	2818	2818		33.516	21.309	1	70808			20697	2931	16885	16908	23053	23053					0.05603301357075452
ISGTVPQAQGG	11	Unmodified	_ISGTVPQAQGG_					0	0	0			REV__RBL2|p.A772P|1|0.05|ENSG00000103479|chr16:53470451-53470451|G/C|missense_variant	REV__RBL2|p.A772P|1|0.05|ENSG00000103479|chr16:53470451-53470451|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7630615234375	2	507.764363	1013.51417	-1.0585	-0.00053749	-1.5415	-0.00078271	-2.6	-0.0013202	507.76339249084987	120.97	3.7026	120.77	119.77	123.47	-0.19719					124	74	3	0	0	0	0.5466	1	11687	11687		49.536	0.094497	1	110330	+		20698	29331	16886	16909	23054	23054					0.007956780581935163
ISGVTYITTG	10	Unmodified	_ISGVTYITTG_					0	0	0			REV__tr|A0A7D6W1T0|A0A7D6W1T0_9CLOTDiaminopimelatedecarboxylaseOS=ClostridiumintestinaleOX=36845GN=lysAPE=3SV=1	REV__tr|A0A7D6W1T0|A0A7D6W1T0_9CLOTDiaminopimelatedecarboxylaseOS=ClostridiumintestinaleOX=36845GN=lysAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	506.2737731933594	2	506.27149	1010.52843	1.7132	0.00086734	2.8503	0.001443	4.5635	0.0023104	506.2727467608177	54.771	2.6321	51.6	50.779	53.411	-3.1715					173	88	3	0	0	0	0.79213	1	1548	1548		19.997	3.5236	1	154000	+		20699	31889	16887	16910	23055	23055					0.023583304864814636
ISGWGSEVIV	10	Unmodified	_ISGWGSEVIV_					0	0	0			REV__nc|ENSG00000107282|Q02410-2|APBA1	REV__nc|ENSG00000107282|Q02410-2|APBA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.259033203125	2	523.779482	1045.54441	-1.3229	-0.0006929	-3.917	-0.0020516	-5.2399	-0.0027445	523.7778974011102	37.035	0.27357	37.035	36.84	37.114	0					8	5	2	0	0	0	0.026994	1	1999	1999		25.574	3.8717	1	24138	+		20700	17840	16888	16911	23056	23056					0.023460367233838042
ISHGSKLC	8	Unmodified	_ISHGSKLC_					0	0	0			REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF	REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MSMS	OvCa99_classI_Rep5	1	422.73541259765625	2	422.720913	843.427273	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.28	1	143.28	142.78	143.78	0								0	0	0	0.30129	1	16744	16744		31.955	5.1588	1		+		20701	27074	16889	16912	23057	23057					-0.0007039969721063244
ISHLHKVLN	9	Unmodified	_ISHLHKVLN_					0	0	0			REV__nc|ENSG00000065150|O00410-2|IPO5	REV__nc|ENSG00000065150|O00410-2|IPO5	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8269653320312	2	530.816733	1059.61891	0.31355	0.00016644	0.73991	0.00039276	1.0535	0.0005592	530.8164969419145	71.923	0.54171	71.923	71.707	72.249	0					20	12	3	0	0	0	0.027462	1	6977	6977		38.806	0	1	308250	+		20702	16785	16890	16913	23058	23058					0.09148844325432037
ISHLNLVAF	9	Unmodified	_ISHLNLVAF_					0	0	0		ENSG00000182621|ENST00000338037|PLCB1;nc|ENSG00000182621|Q9NQ66-2|PLCB1;chr20:8114573-8150294|319|13.27|0.08|7.3|+|ENST00000625874|PLCB1,PLCB1	ENSG00000182621|ENST00000338037|PLCB1	ENSG00000182621|ENST00000338037|PLCB1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.7690734863281	2	507.292559	1012.57057	-1.113	-0.00056464	2.7524	0.0013963	1.6393	0.00083163	507.795844460698	99.768	0.35629	97.443	97.212	97.568	-2.3253					9	6	2	0	0	0	0.027462	1	8892	8892		12.207	0	1	27884			20703	8014	16891	16914	23059	23059					0.06478350685506484
ISHLNWDT	8	Unmodified	_ISHLNWDT_					0	0	0			REV__ENST00000529993.5_1_11:68171724-68216535:+|nuORF	REV__ENST00000529993.5_1_11:68171724-68216535:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.7225341796875	2	493.240524	984.466495	-0.88769	-0.00043785	-4.0025	-0.0019742	-4.8902	-0.0024121	493.2390040702601	50.552	0.3518	50.552	50.288	50.64	0					10	7	2	0	0	0	0.028476	1	3820	3820		16.473	1.6083	1	81148	+		20704	20727	16892	16915	23060	23060					-0.026359761420053474
ISHLYHDALTL	11	Unmodified	_ISHLYHDALTL_					0	0	0			REV__nc|ENSG00000288591|Q9Y2I9-3|TBC1D30	REV__nc|ENSG00000288591|Q9Y2I9-3|TBC1D30	MULTI-SECPEP	OvCa99_classI_Rep5	1	641.343017578125	2	641.843145	1281.67174	2.0521	0.0013171	-2.1404	-0.0013738	-0.088274	-5.6658E-05	642.343799962147	77.798	0.71001	77.798	77.544	78.254	0					33	16	3	0	0	0	0.02539	1	7855	7855		35.152	10.026	1	924780	+		20705	18036	16893	16916	23061	23061					0.04216757597555443
ISHQFITL	8	Unmodified	_ISHQFITL_					0	0	0			REV__ENST00000535257.1_1_12:122391860-122397069:+|nuORF	REV__ENST00000535257.1_1_12:122391860-122397069:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	479.7715148925781	2	479.77146	957.528367	-0.027451	-1.317E-05	0.12127	5.818E-05	0.093815	4.501E-05	479.7714361650209	72.282	1.7759	69.775	69.381	71.157	-2.5071					93	33	4	0	0	0	0.34187	1	5848	5848		99.375	6.1795	1	1082900	+		20706	27283	16894	16917	23062	23062					0.04790375277127623
ISHRKLNKDK	10	Unmodified	_ISHRKLNKDK_					0	0	0			REV__ENSG00000176749|ENST00000313401|CDK5R1	REV__ENSG00000176749|ENST00000313401|CDK5R1	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8692626953125	2	619.870028	1237.7255	-4.5563	-0.0028243	3.9466	0.0024464	-0.60971	-0.00037794	619.8721468174133	154.73	0.91951	153.72	153.37	154.29	-1.0076					32	18	2	0	0	0	0.83261	1	13277	13277		14.865	1.4108	1	39850	+		20707	21967	16895	16918	23063	23063					0.11614974819917734
ISHSGGMLRA	10	Unmodified	_ISHSGGMLRA_					0	0	0		ENSG00000275023|ENST00000621332|MLLT6	ENSG00000275023|ENST00000621332|MLLT6	ENSG00000275023|ENST00000621332|MLLT6	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.8041381835938	2	514.768926	1027.5233	1.5307	0.00078794	-3.5512	-0.0018281	-2.0206	-0.0010401	514.7671173605472	93.146	0.37827	93.146	92.968	93.346	0					14	8	2	0	0	0	0.02661	1	10079	10079		58.782	5.4305	1	359980			20708	9565	16896	16919	23064	23064					0.010637481428830142
ISHWKGNMTR	10	Unmodified	_ISHWKGNMTR_					0	0	0		nc|ENSG00000106366|P05121-2|SERPINE1;ENSG00000106366|ENST00000223095|SERPINE1	nc|ENSG00000106366|P05121-2|SERPINE1	nc|ENSG00000106366|P05121-2|SERPINE1	MULTI-MSMS	OvCa9_classI_Rep2	2	615.3128051757812	2	615.314032	1228.61351	0.20171	0.00012412	-0.96497	-0.00059376	-0.76326	-0.00046965	615.3133591810388	126.31	2.1704	126.07	125.75	127.92	-0.2359					129	43	5	0	0	0	0.44431	1	12359	12359		62.107	0.41614	1	1360300			20709	2547	16897	16920	23065	23065					0.008347974712705764
ISIFAGIVVA	10	Unmodified	_ISIFAGIVVA_					0	0	0			REV__nc|ENSG00000155380|P53985-2|SLC16A1	REV__nc|ENSG00000155380|P53985-2|SLC16A1	MULTI-MSMS	OvCa99_classI_Rep5	1	495.3045654296875	2	495.305136	988.595718	-0.017862	-8.8474E-06	-3.2876	-0.0016284	-3.3055	-0.0016372	495.3033717326036	105.41	0.65825	105.41	105.09	105.75	0					35	14	3	0	0	0	0.17982	1	11833	11833		97.473	1.2823	1	1549900	+		20710	20424	16898	16921	23066	23066					0.10096405488081928
ISIFIKPKS	9	Unmodified	_ISIFIKPKS_					0	0	0		nc|ENSG00000075711|Q12959-8|DLG1;PAK2-DLG1|3|fusion;PAK2-DLG1|5|fusion;nc|ENSG00000075711|Q12959-7|DLG1;nc|ENSG00000075711|Q12959|DLG1;PAK2-DLG1|6|fusion;ENSG00000075711|ENST00000667157|DLG1;nc|ENSG00000075711|Q12959-6|DLG1;PAK2-DLG1|1|fusion;PAK2-DLG1|4|fusion;nc|ENSG00000075711|Q12959-9|DLG1;nc|ENSG00000075711|Q12959-3|DLG1;PAK2-DLG1|7|fusion;PAK2-DLG1|9|fusion;PAK2-DLG1|2|fusion;PAK2-DLG1|10|fusion;nc|ENSG00000075711|Q12959-5|DLG1;PAK2-DLG1|8|fusion;nc|ENSG00000075711|Q12959-2|DLG1	nc|ENSG00000075711|Q12959-8|DLG1	nc|ENSG00000075711|Q12959-8|DLG1	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.277099609375	2	516.826235	1031.63792	1.8469	0.0009545	-1.0745	-0.00055535	0.77231	0.00039915	516.8254524192696	91.545	1.7151	91.545	91.296	93.011	0					83	40	3	0	0	0	0.027403	1	10062	10062		69.628	6.3214	1	778440			20711	1541	16899	16922	23067	23067					0.12336380896454102
ISIKNGKLK	9	Unmodified	_ISIKNGKLK_					0	0	0			REV__ENSG00000183542|ENST00000309384|KLRC4	REV__ENSG00000183542|ENST00000309384|KLRC4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.7601318359375	2	500.829309	999.644065	-1.1427	-0.00057229	0.89246	0.00044697	-0.25021	-0.00012531	500.82972753877135	69.982	0.49126	66.5	66.345	66.836	-3.4812					12	9	2	0	0	0	0.027462	1	5282	5282		23.523	7.0495	1	22269	+		20712	22368	16900	16923	23068	23068					0.1442289912799879
ISILNIARH	9	Unmodified	_ISILNIARH_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.83642578125	2	518.816733	1035.61891	-0.82877	-0.00042998	2.7487	0.0014261	1.92	0.0009961	518.8186018359983	55.662	0.20249	55.662	55.52	55.723	0					7	4	2	0	0	0	0.027462	1	4558	4558		39.253	0	1	145320			20713	5793	16901	16924	23069	23069					0.10252844325418664
ISIPSLRTP	9	Unmodified	_ISIPSLRTP_					0	0	0			REV__ENSG00000125965|ENST00000374369|GDF5	REV__ENSG00000125965|ENST00000374369|GDF5	MULTI-MSMS	OvCa9_classI_Rep3	3	492.2986755371094	2	492.297842	982.581131	-0.50282	-0.00024754	0.79115	0.00038948	0.28833	0.00014194	492.2979887562517	98.584	1.3369	96.855	96.396	97.733	-1.7291					50	25	3	0	0	0	0.37135	1	6595	6595		54.776	1.8396	1	378280	+		20714	18762	16902	16925	23070	23070					0.08914333339953373
ISIPTALRL	9	Unmodified	_ISIPTALRL_					0	0	0			REV__tr|A0A7D6VXE2|A0A7D6VXE2_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12540PE=4SV=1	REV__tr|A0A7D6VXE2|A0A7D6VXE2_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12540PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	492.3179626464844	2	492.316035	982.617516	-0.45847	-0.00022571	0.18173	8.9468E-05	-0.27674	-0.00013624	492.31603122769184	98.824	1.4451	97.139	96.852	98.297	-1.685					69	27	4	0	0	0	0.14998	1	6623	6623		84.916	5.2029	1	818000	+		20715	31775	16903	16926	23071	23071					0.12551210236631505
ISIVELALE	9	Unmodified	_ISIVELALE_					0	0	0		ENSG00000118873|ENST00000358951|RAB3GAP2	ENSG00000118873|ENST00000358951|RAB3GAP2	ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-MSMS	OvCa99_classI_Rep5	1	493.7928466796875	2	493.792058	985.569563	1.3699	0.00067643	0.38439	0.00018981	1.7543	0.00086624	493.7921470637569	148.91	0.68213	148.91	148.72	149.4	0					42	13	4	0	0	0	0.46377	1	17450	17450		45.952	1.8352	1	151760			20716	3328	16904	16927	23072	23072					0.07620091525950556
ISIVLSTKLG	10	Unmodified	_ISIVLSTKLG_					0	0	0			REV__tr|A0A553SJM4|A0A553SJM4_NIACIMgtC/SapBfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_17130PE=3SV=1	REV__tr|A0A553SJM4|A0A553SJM4_NIACIMgtC/SapBfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_17130PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	515.8291015625	2	515.828975	1029.6434	0.047341	2.442E-05	-0.33086	-0.00017066	-0.28352	-0.00014625	515.8287151259711	133.92	2.3165	132.79	132.47	134.79	-1.1226					129	46	5	0	0	0	0.6349	1	10883	10883		37.812	1.3648	1	885720	+		20717	30018	16905	16928	23073	23073					0.12976059688253372
ISIVNKVMA	9	Unmodified	_ISIVNKVMA_					0	0	0		tr|A0A7D6VSA7|A0A7D6VSA7_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08555PE=4SV=1	tr|A0A7D6VSA7|A0A7D6VSA7_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08555PE=4SV=1	tr|A0A7D6VSA7|A0A7D6VSA7_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08555PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.79058837890625	2	487.788795	973.563038	-4.2794	-0.0020875	3.2408	0.0015808	-1.0387	-0.00050666	487.79251111833076	154.83	2.3732	153.37	151.85	154.22	-1.4601					80	63	2	0	0	0	0.69895	1	15337	15337		18.324	0	1	62256			20718	35006	16906	16929	23074	23074					0.0751987509358969
ISIYKTSLN	9	Unmodified	_ISIYKTSLN_					0	0	0		tr|A0A7D6VQY3|A0A7D6VQY3_9CLOTDUF916domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00245PE=4SV=1	tr|A0A7D6VQY3|A0A7D6VQY3_9CLOTDUF916domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00245PE=4SV=1	tr|A0A7D6VQY3|A0A7D6VQY3_9CLOTDUF916domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00245PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	519.7929077148438	2	519.795132	1037.57571	1.5307	0.00079564	-4.1853	-0.0021755	-2.6546	-0.0013798	519.7927708482009	121.53	4.9018	120.5	119.85	124.76	-1.0286					197	93	4	0	0	0	0.37135	1	9384	9384		54.776	5.3348	1	827300			20719	34878	16907	16930	23075	23075					0.05842609757473838
ISKALVPYYQK	11	Unmodified	_ISKALVPYYQK_					0	0	0		RPS16|p.A94P|1|0.05|ENSG00000105193|chr19:39433537-39433537|C/G|missense_variant	RPS16|p.A94P|1|0.05|ENSG00000105193|chr19:39433537-39433537|C/G|missense_variant	RPS16|p.A94P|1|0.05|ENSG00000105193|chr19:39433537-39433537|C/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	437.7322692871094	3	437.255334	1308.74417	-0.63129	-0.00027603	-2.4562	-0.001074	-3.0875	-0.00135	437.2540666543583	53.536	1.3297	50.328	49.995	51.324	-3.208					56	25	3	0	0	0	0.025908	1	3317	3317		21.78	1.4654	1	178590			20720	32791	16908	16931	23076	23076					0.10215091671125265
ISKALVPYYQK	11	Unmodified	_ISKALVPYYQK_					0	0	0		RPS16|p.A94P|1|0.05|ENSG00000105193|chr19:39433537-39433537|C/G|missense_variant	RPS16|p.A94P|1|0.05|ENSG00000105193|chr19:39433537-39433537|C/G|missense_variant	RPS16|p.A94P|1|0.05|ENSG00000105193|chr19:39433537-39433537|C/G|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		3	437.255334	1308.74417	-0.48508	-0.0002121	-2.9417	-0.0012863	-3.4268	-0.0014984	437.2540226466797	53.165	1.3889	50.351	49.936	51.325	-2.8139	0.011538	-0.00031222	NaN	21.78	70	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90829			20721	32791	16908	16931							0.10215091671125265
ISKASAVLIL	10	Unmodified	_ISKASAVLIL_					0	0	0		ENST00000589484.5_1_19:1417247-1428848:+|nuORF	ENST00000589484.5_1_19:1417247-1428848:+|nuORF	ENST00000589484.5_1_19:1417247-1428848:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.81341552734375	2	507.831517	1013.64848	-0.12057	-6.123E-05	-2.3839	-0.0012106	-2.5045	-0.0012719	507.8295196956482	109.7	0.26417	108.09	107.86	108.12	-1.6011					5	4	2	0	0	0	0.02711	1	10058	10058		104.06	2.8042	1	5142.4			20722	14089	16909	16932	23077	23077					0.14220363550907678
ISKEEVKL	8	Unmodified	_ISKEEVKL_					0	0	0		L1PB1_dup5905|chr7:93807211-93809400:+|8.337698263303487|0.2056128638309657|5.34|416.0|1|1|sense	L1PB1_dup5905|chr7:93807211-93809400:+|8.337698263303487|0.2056128638309657|5.34|416.0|1|1|sense	L1PB1_dup5905|chr7:93807211-93809400:+|8.337698263303487|0.2056128638309657|5.34|416.0|1|1|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	473.2860107421875	2	473.2844	944.554247	2.0822	0.00098548	0.16285	7.7076E-05	2.2451	0.0010626	473.28432225570396	137.75	0.76125	137.75	137.5	138.26	0					36	16	3	0	0	0	0.38806	1	16062	16062		90.37	2.6155	1	300660			20723	14775	16910	16933	23078	23078					0.07975224728750163
ISKEEVKL	8	Unmodified	_ISKEEVKL_					0	0	0		L1PB1_dup5905|chr7:93807211-93809400:+|8.337698263303487|0.2056128638309657|5.34|416.0|1|1|sense	L1PB1_dup5905|chr7:93807211-93809400:+|8.337698263303487|0.2056128638309657|5.34|416.0|1|1|sense	L1PB1_dup5905|chr7:93807211-93809400:+|8.337698263303487|0.2056128638309657|5.34|416.0|1|1|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	473.2835998535156	2	473.2844	944.554247	-0.43716	-0.0002069	0.27678	0.00013099	-0.16038	-7.5905E-05	473.28438617111897	136.5	1.2154	135.4	135.15	136.36	-1.1076					38	24	3	0	0	0	0.58851	1	11088	11088		66.429	2.222	1	56592			20724	14775	16910	16933	23079	23079					0.07975224728750163
ISKEGRQQN	9	Unmodified	_ISKEGRQQN_					0	0	0			REV__ENSG00000138823|ENST00000265517|MTTP	REV__ENSG00000138823|ENST00000265517|MTTP	MULTI-MSMS	OvCa9_classI_Rep2	2	530.2787475585938	2	530.280712	1058.54687	-1.1806	-0.00062605	-2.4939	-0.0013225	-3.6745	-0.0019485	530.2791627233665	122.04	1.4342	121.82	121.08	122.51	-0.21803					61	28	3	0	0	0	0.35444	1	11808	11808		56.721	3.7844	1	120110	+		20725	19580	16911	16934	23080	23080					0.019938851810593405
ISKEIRQVV	9	Unmodified	_ISKEIRQVV_					0	0	0		nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3193359375	2	536.329673	1070.64479	-0.10187	-5.4638E-05	-0.63755	-0.00034194	-0.73943	-0.00039658	536.329175248379	30.409	0.59556	30.409	30.285	30.881	0					26	11	4	0	0	0	0.027462	1	1206	1206		24.203	0	1	511800			20726	5982	16912	16935	23081	23081					0.11229693777045213
ISKFIIEIYI	10	Unmodified	_ISKFIIEIYI_					0	0	0			REV__ENST00000269122.7_2_17:57751041-57751116:+|nuORF	REV__ENST00000269122.7_2_17:57751041-57751116:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8687744140625	2	619.873382	1237.73221	-3.6059	-0.0022352	-2.8194	-0.0017477	-6.4253	-0.0039829	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.70152	1	12848	12848		30.318	3.6248	1	664560	+		20727	24061	16913	16936	23082	23082					0.12285474927966789
ISKGELLCIL	10	Unmodified	_ISKGELLCIL_					0	0	0		tr|A0A553SI59|A0A553SI59_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_14235PE=4SV=1	tr|A0A553SI59|A0A553SI59_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_14235PE=4SV=1	tr|A0A553SI59|A0A553SI59_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_14235PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	544.8212280273438	2	544.822835	1087.63112	-0.94668	-0.00051577	-2.2793	-0.0012418	-3.226	-0.0017576	544.8214432628807	117.05	1.3369	116.02	115.7	117.03	-1.0324					73	26	4	0	0	0	0.52439	1	8784	8784		51.193	8.7966	1	405390			20728	33347	16914	16937	23083	23083					0.09080699953574367
ISKHWICD	8	Unmodified	_ISKHWICD_					0	0	0		ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.Y2986Sfs*28|1|0.8|ENSG00000168702|chr2:140495631-140495643|TGTAAGTCCCGTA/-|frameshift_variant	ENSG00000168702|ENST00000389484|LRP1B	ENSG00000168702|ENST00000389484|LRP1B	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.2852783203125	2	501.247295	1000.48004	-0.10685	-5.3558E-05	-1.3408	-0.00067207	-1.4476	-0.00072563	501.2465917327548	81.237	0.71009	79.589	79.365	80.075	-1.6485					17	13	2	0	0	0	0.028476	1	6922	6922		42.396	5.237	1	29674			20729	6934	16915	16938	23084	23084					-0.020184416344363854
ISKHYRILND	10	Unmodified	_ISKHYRILND_					0	0	0		tr|A0A7D6ZUN7|A0A7D6ZUN7_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12665PE=4SV=1	tr|A0A7D6ZUN7|A0A7D6ZUN7_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12665PE=4SV=1	tr|A0A7D6ZUN7|A0A7D6ZUN7_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12665PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	629.849609375	2	629.848761	1257.68297	-0.76347	-0.00048087	1.0258	0.00064611	0.26235	0.00016524	629.8490645395771	92.583	1.5683	90.068	89.595	91.163	-2.5147					91	31	4	0	0	0	0.5277	1	8085	8085		46.457	8.6453	1	1025100			20730	35779	16916	16939	23085	23085					0.06443579691699597
ISKIKDVY	8	Unmodified	_ISKIKDVY_					0	0	0		tr|A0A7D6ZHY5|A0A7D6ZHY5_9CLOTNUDIXhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01560PE=4SV=1	tr|A0A7D6ZHY5|A0A7D6ZHY5_9CLOTNUDIXhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01560PE=4SV=1	tr|A0A7D6ZHY5|A0A7D6ZHY5_9CLOTNUDIXhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01560PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.27386474609375	2	483.286943	964.559333	-0.78919	-0.0003814	3.0398	0.0014691	2.2506	0.0010877	483.2886919556619	44.373	0.26919	44.373	44.215	44.484	0					8	5	2	0	0	0	0.028476	1	3004	3004		38.806	5.2906	1	99094			20731	35595	16917	16940	23086	23086					0.07563528591367685
ISKIREEF	8	Unmodified	_ISKIREEF_					0	0	0		TUBB4A|p.M330Afs*87|1|0.08|ENSG00000104833|chr19:6495510-6495511|AT/-|frameshift_variant;ENSG00000104833|ENST00000264071|TUBB4A	TUBB4A|p.M330Afs*87|1|0.08|ENSG00000104833|chr19:6495510-6495511|AT/-|frameshift_variant	TUBB4A|p.M330Afs*87|1|0.08|ENSG00000104833|chr19:6495510-6495511|AT/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	511.2906494140625	2	511.287474	1020.5604	1.3574	0.00069403	0.77297	0.00039521	2.1304	0.0010892	511.28750324002795	93.485	0.87093	93.485	93.093	93.964	0					76	19	6	0	0	0	0.58851	1	10118	10118		66.429	11.665	1	9807100			20732	2396	16918	16941	23087	23087					0.05093742960275449
ISKISKIYTK	10	Unmodified	_ISKISKIYTK_					0	0	0			REV__tr|A0A7D7A2M1|A0A7D7A2M1_9CLOTIron-containingalcoholdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17690PE=4SV=1	REV__tr|A0A7D7A2M1|A0A7D7A2M1_9CLOTIron-containingalcoholdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17690PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	590.7888793945312	2	590.868631	1179.72271	0.41632	0.00024599	-4.3205	-0.0025529	-3.9042	-0.0023069	590.8666242006846	162.51	0.2025	162.51	162.43	162.63	0					12	5	3	0	0	0	0.02706	1	19052	19052		12.207	0	1	496380	+		20733	32545	16919	16942	23088	23088					0.140037066423929
ISKKIVYVE	9	Unmodified	_ISKKIVYVE_					0	0	0			REV__ENST00000371953.7_1_10:89720723-89720768:+|nuORF	REV__ENST00000371953.7_1_10:89720723-89720768:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.799072265625	2	539.828975	1077.6434	2.2261	0.0012017	-1.4918	-0.00080531	0.73433	0.00039641	540.3299234324172	82.708	0.72778	82.708	82.307	83.035	0					31	16	3	0	0	0	0.027462	1	8602	8602		21.96	0	1	300130	+		20734	24995	16920	16943	23089	23089					0.10768059688280118
ISKKNPLW	8	Unmodified	_ISKKNPLW_					0	0	0			REV__ENST00000322054.9_1_2:31489890-31490169:+|nuORF	REV__ENST00000322054.9_1_2:31489890-31490169:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.286865234375	2	493.295102	984.575651	1.4847	0.00073238	-0.38423	-0.00018954	1.1004	0.00054284	493.29428701584453	85.032	0.29757	82.386	82.263	82.561	-2.6463					6	5	2	0	0	0	0.028476	1	7135	7135		47.916	0	1	12742	+		20735	24456	16921	16944	23090	23090					0.08274654548119997
ISKKVETSI	9	Unmodified	_ISKKVETSI_					0	0	0			REV__nc|ENSG00000211694|A0A0A0MS01|TRGV10	REV__nc|ENSG00000211694|A0A0A0MS01|TRGV10	MULTI-MSMS	OvCa99_classI_Rep5	1	502.8036804199219	2	502.802957	1003.59136	-0.49475	-0.00024876	0.86818	0.00043652	0.37344	0.00018777	502.80327234460293	54.53	0.85417	54.53	54.253	55.107	0					47	19	3	0	0	0	0.28934	1	4417	4417		64.207	0.67341	1	2055900	+		20736	29112	16922	16945	23091	23091					0.08970896274524875
ISKKVETSI	9	Unmodified	_ISKKVETSI_					0	0	0			REV__nc|ENSG00000211694|A0A0A0MS01|TRGV10	REV__nc|ENSG00000211694|A0A0A0MS01|TRGV10	MULTI-MATCH	OvCa9_classI_Rep2	2		2	502.802957	1003.59136	-1.2798	-0.00064351	1.7485	0.00087915	0.46866	0.00023564	502.8038566920055	56.969	0.89165	54.176	53.881	54.773	-2.792	-0.1017	0.0008544	NaN	64.207	21	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26165	+		20737	29112	16922	16945							0.08970896274524875
ISKKVETSI	9	Unmodified	_ISKKVETSI_					0	0	0			REV__nc|ENSG00000211694|A0A0A0MS01|TRGV10	REV__nc|ENSG00000211694|A0A0A0MS01|TRGV10	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	502.802957	1003.59136	-0.46574	-0.00023417	0.75855	0.0003814	0.29281	0.00014723	502.80336939216534	57.473	1.1148	54.128	53.934	55.049	-3.3449	-0.14972	-0.0001411	NaN	64.207	37	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82231	+		20738	29112	16922	16945							0.08970896274524875
ISKLDTLSF	9	Unmodified	_ISKLDTLSF_					0	0	0			REV__ENSG00000121749|ENST00000485960|TBC1D15	REV__ENSG00000121749|ENST00000485960|TBC1D15	MULTI-MSMS	OvCa99_classI_Rep5	1	512.291259765625	2	512.289682	1022.56481	1.9394	0.00099355	0.2021	0.00010353	2.1415	0.0010971	512.2897289965773	137.79	0.71289	137.79	137.5	138.21	0					24	15	2	0	0	0	0.35444	1	16069	16069		56.721	0	1	129480	+		20739	18554	16923	16946	23092	23092					0.05443207383200388
ISKLEPLSI	9	Unmodified	_ISKLEPLSI_					0	0	0			REV__tr|A0A553SIL5|A0A553SIL5_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15090PE=4SV=1	REV__tr|A0A553SIL5|A0A553SIL5_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15090PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	500.3090515136719	2	500.307875	998.601197	1.5145	0.00075774	0.46445	0.00023237	1.979	0.0009901	500.3079470221863	119.86	0.74856	119.86	119.52	120.27	0					50	17	4	0	0	0	0.036986	2	13752	13752;13781		129.42	6.2132	1	2925800	+		20740	29904	16924	16947	23093;23094	23093					0.10184084279910621
ISKLINNDP	9	Unmodified	_ISKLINNDP_					0	0	0		tr|A0A7D6ZY15|A0A7D6ZY15_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00445PE=4SV=1	tr|A0A7D6ZY15|A0A7D6ZY15_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00445PE=4SV=1	tr|A0A7D6ZY15|A0A7D6ZY15_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00445PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.8019714355469	2	507.284931	1012.55531	-1.2922	-0.00065553	1.1947	0.00060606	-0.097523	-4.9472E-05	507.28471670196143	54.972	0.81569	51.725	51.542	52.358	-3.2474					25	15	2	0	0	0	0.02744	1	3425	3425		62.107	29.295	1	25732			20741	35906	16925	16948	23095	23095					0.04953439097653245
ISKPQDLLLSP	11	Unmodified	_ISKPQDLLLSP_					0	0	0			REV__tr|A0A553SG27|A0A553SG27_NIACItRNAepoxyqueuosine(34)reductaseQueGOS=NialliacirculansOX=1397GN=queGPE=4SV=1	REV__tr|A0A553SG27|A0A553SG27_NIACItRNAepoxyqueuosine(34)reductaseQueGOS=NialliacirculansOX=1397GN=queGPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	605.8555297851562	2	605.855721	1209.69689	-0.016179	-9.8024E-06	0.029386	1.7804E-05	0.013207	8.0014E-06	605.8556533984647	132.36	2.1681	132.13	131.83	134	-0.22697					108	43	5	0	0	0	0.65063	1	13073	13073		40.058	0	1	589450	+		20742	29652	16926	16949	23096	23096					0.10042812400138246
ISKQWGGLV	9	Unmodified	_ISKQWGGLV_					0	0	0		ENST00000571541.5_1_17:7293706-7296729:-|nuORF;ENSG00000187838|ENST00000619711|PLSCR3	ENST00000571541.5_1_17:7293706-7296729:-|nuORF	ENST00000571541.5_1_17:7293706-7296729:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	494.2859802246094	2	494.284734	986.554916	-0.09699	-4.7941E-05	3.0706	0.0015177	2.9736	0.0014698	494.28606431515385	83.612	2.4718	82.013	81.369	83.841	-1.5988					133	49	4	0	0	0	0.21231	1	7127	7127		74.255	7.8258	1	1379300			20743	8439	16927	16950	23097	23097					0.06110064168467488
ISKSYLVD	8	Unmodified	_ISKSYLVD_					0	0	0			REV__tr|A0A7D6VU64|A0A7D6VU64_9CLOTCobW/HypB/UreGnucleotide-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00715PE=4SV=1	REV__tr|A0A7D6VU64|A0A7D6VU64_9CLOTCobW/HypB/UreGnucleotide-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00715PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	462.756591796875	2	462.755475	923.496398	1.2759	0.00059043	0.5834	0.00026997	1.8593	0.0008604	462.75566756392055	119.36	0.45943	119.36	119.19	119.65	0					17	11	2	0	0	0	0.25402	1	13707	13707		115.46	3.8107	1	136180	+		20744	31654	16928	16951	23098	23098					0.03158962803331633
ISKTISVLS	9	Unmodified	_ISKTISVLS_					0	0	0			REV__ENSG00000122012|ENST00000502798|SV2C	REV__ENSG00000122012|ENST00000502798|SV2C	MULTI-MSMS	OvCa9_classI_Rep2	2	474.2909240722656	2	474.292225	946.569897	0.95771	0.00045423	-3.7916	-0.0017984	-2.8339	-0.0013441	474.29028339159595	128.45	2.7168	128.22	127.09	129.81	-0.22696					89	54	3	0	0	0	0.63422	1	12715	12715		27.882	1.1893	1	54113	+		20745	18573	16929	16952	23099	23099					0.09447511245809892
ISKTISVLS	9	Unmodified	_ISKTISVLS_					0	0	0			REV__ENSG00000122012|ENST00000502798|SV2C	REV__ENSG00000122012|ENST00000502798|SV2C	MULTI-MATCH	OvCa9_classI_Rep3	3		2	474.292225	946.569897	1.4732	0.0006987	-4.9084	-0.002328	-3.4353	-0.0016293	474.28981328565504	128.93	1.186	127.83	127.37	128.56	-1.0933	-0.21063	-0.00041034	NaN	27.882	35	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16259	+		20746	18573	16929	16952							0.09447511245809892
ISKTKQVI	8	Unmodified	_ISKTKQVI_					0	0	0		nc|ENSG00000126214|Q07866-8|KLC1;nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866-3|KLC1;nc|ENSG00000126214|Q07866|KLC1;nc|ENSG00000126214|Q07866-7|KLC1;nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-6|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1;KLC1|p.T215Efs*65|1|0.11|ENSG00000126214|chr14:103662772-103662773|-/GAGACCCTGTCTCAGAAAAACAAGCAAT|frameshift_variant;KLC1|p.A37Dfs*5|1|0.06|ENSG00000126214|chr14:103654673-103654674|-/A|frameshift_variant;KLC1|p.L38Tfs*8|1|0.06|ENSG00000126214|chr14:103654674-103654675|-/AACAGCACAAATGATGCTGT|frameshift_variant	nc|ENSG00000126214|Q07866-8|KLC1	nc|ENSG00000126214|Q07866-8|KLC1	MULTI-MSMS	OvCa99_classI_Rep5	1	458.7942199707031	2	458.794935	915.575317	0.59901	0.00027482	-0.5896	-0.00027051	0.009406	4.3154E-06	458.7945548026464	45.613	1.172	45.613	45.373	46.545	0					40	26	2	0	0	0	0.31763	2	3158	3158;3186		104.06	13.687	1	2201200			20747	3768	16930	16953	23100;23101	23100					0.11415234828268694
ISKTLFTI	8	Unmodified	_ISKTLFTI_					0	0	0			REV__tr|A0A553SIG3|A0A553SIG3_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14705PE=4SV=1	REV__tr|A0A553SIG3|A0A553SIG3_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14705PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	462.7574157714844	2	461.784036	921.553519	-0.5615	-0.00025929	-2.8366	-0.0013099	-3.3981	-0.0015692	461.78270830867746	61.668	0.53616	61.668	61.458	61.994	0					25	12	3	0	0	0	0.028476	1	5477	5477		17.365	0	1	877440	+		20748	29890	16931	16954	23102	23102					0.08960430079707749
ISKVEDVQT	9	Unmodified	_ISKVEDVQT_					0	0	0			REV__nc|ENSG00000155890|Q8IWZ5-2|TRIM42	REV__nc|ENSG00000155890|Q8IWZ5-2|TRIM42	MULTI-SECPEP	OvCa9_classI_Rep3	3	509.80474853515625	2	509.774396	1017.53424	1.33	0.00067799	-1.8021	-0.00091868	-0.47216	-0.00024069	509.7733420473371	112.78	0.68632	111.7	111.41	112.1	-1.0753					22	13	2	0	0	0	0.027438	1	8257	8257		32.751	0	1	45915	+		20749	20447	16932	16955	23103	23103					0.026174289981327092
ISKVVLRDL	9	Unmodified	_ISKVVLRDL_					0	0	0			REV__ENSG00000187510|ENST00000344636|PLEKHG7	REV__ENSG00000187510|ENST00000344636|PLEKHG7	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.842529296875	2	521.834591	1041.65463	2.4103	0.0012578	-2.7848	-0.0014532	-0.37456	-0.00019546	521.8330625529532	90.053	0.2102	90.053	89.891	90.101	0					8	4	2	0	0	0	0.027447	1	9646	9646		56.721	5.3856	1	655020	+		20750	22642	16933	16956	23104	23104					0.13546881782394848
ISKYEKNIFLE	11	Unmodified	_ISKYEKNIFLE_					0	0	0			REV__tr|A0A7D6VVD2|A0A7D6VVD2_9CLOTATP-dependenthelicase/nucleasesubunitAOS=ClostridiumintestinaleOX=36845GN=addAPE=3SV=1	REV__tr|A0A7D6VVD2|A0A7D6VVD2_9CLOTATP-dependenthelicase/nucleasesubunitAOS=ClostridiumintestinaleOX=36845GN=addAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	461.9219665527344	3	461.922132	1382.74457	-0.3032	-0.00014005	-2.9394	-0.0013578	-3.2426	-0.0014978	461.92069539360097	60.88	1.4067	57.45	57.144	58.55	-3.43					89	28	5	0	0	0	0.70848	1	4145	4145		26.75	3.3718	1	665300	+		20751	31714	16934	16957	23105	23105					0.06850466600303662
ISKYLLKVL	9	Unmodified	_ISKYLLKVL_					0	0	0		tr|A0A7D6VQ19|A0A7D6VQ19_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13770PE=4SV=1	tr|A0A7D6VQ19|A0A7D6VQ19_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13770PE=4SV=1	tr|A0A7D6VQ19|A0A7D6VQ19_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13770PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.8102416992188	2	538.857535	1075.70052	1.1201	0.00060356	-0.409	-0.0002204	0.71106	0.00038316	538.856775575259	90.865	0.35913	90.865	90.656	91.016	0					13	8	2	0	0	0	0.027462	1	9751	9751		14.865	7.6715	1	269890			20752	34815	16935	16958	23106	23106					0.16569526964667602
ISLAFFLYD	9	Unmodified	_ISLAFFLYD_					0	0	0		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.8187255859375	2	544.786776	1087.559	-0.96362	-0.00052497	-3.1781	-0.0017314	-4.1417	-0.0022563	544.7849686844044	103.74	1.259	101.62	101.38	102.64	-2.1192					59	23	4	0	0	0	0.027426	1	9405	9405		53.351	10.955	1	225050			20753	2585	16936	16959	23107	23107					0.0187210887152105
ISLAKRVIIL	10	Unmodified	_ISLAKRVIIL_					0	0	0		tr|A0A7D6ZEE3|A0A7D6ZEE3_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13365PE=4SV=1	tr|A0A7D6ZEE3|A0A7D6ZEE3_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13365PE=4SV=1	tr|A0A7D6ZEE3|A0A7D6ZEE3_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13365PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	563.3524169921875	2	563.389534	1124.76451	-0.45849	-0.00025831	-3.4145	-0.0019237	-3.873	-0.002182	563.3876636923345	116.1	0.19801	115.98	115.89	116.08	-0.11777					5	3	2	0	0	0	0.026553	1	11091	11091		76.774	20.053	1	8668.7			20754	35480	16937	16960	23108	23108					0.2071230712160741
ISLDWRIL	8	Unmodified	_ISLDWRIL_					0	0	0		ENST00000479767.1_1_9:139651519-139651801:-|nuORF	ENST00000479767.1_1_9:139651519-139651801:-|nuORF	ENST00000479767.1_1_9:139651519-139651801:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	508.3038024902344	2	508.300384	1014.58622	1.4265	0.00072511	1.171	0.00059521	2.5975	0.0013203	508.30093068725466	90.387	2.8271	89.085	88.433	91.26	-1.302					94	54	2	0	0	0	0.68714	1	8004	8004		45.952	1.8352	1	695110			20755	12509	16938	16961	23109	23109					0.07950637202554844
ISLESEER	8	Unmodified	_ISLESEER_					0	0	0		ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-14|DMD;nc|ENSG00000198947|P11532-17|DMD;nc|ENSG00000198947|P11532-2|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-12|DMD;nc|ENSG00000198947|P11532-15|DMD;nc|ENSG00000198947|P11532-6|DMD;nc|ENSG00000198947|P11532-7|DMD;nc|ENSG00000198947|P11532-8|DMD;nc|ENSG00000198947|P11532-5|DMD;ENST00000481143.2_1_X:31116236-31187660:-|nuORF	ENSG00000198947|ENST00000357033|DMD	ENSG00000198947|ENST00000357033|DMD	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.7200622558594	2	481.743096	961.47164	0.02729	1.3147E-05	-1.6879	-0.00081314	-1.6606	-0.00079999	481.7422512943094	33.126	0.24526	33.126	32.941	33.186	0					6	4	2	0	0	0	0.028476	1	1505	1505		35.618	5.1146	1	11113			20756	8914	16939	16962	23110	23110					-0.010637170700420029
ISLFPIKLG	9	Unmodified	_ISLFPIKLG_					0	0	0			REV__tr|A0A7D6VPN3|A0A7D6VPN3_9CLOTAECfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17530PE=3SV=1	REV__tr|A0A7D6VPN3|A0A7D6VPN3_9CLOTAECfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17530PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	494.3153076171875	2	494.315503	986.616454	1.6323	0.00080688	0.46869	0.00023168	2.101	0.0010386	494.31563510682804	133.54	0.653	133.54	133.31	133.96	0					32	13	3	0	0	0	0.3076	1	15532	15532		62.107	9.1707	1	365090	+		20757	31262	16940	16963	23111	23111					0.12260995867745805
ISLGLYRRL	9	Unmodified	_ISLGLYRRL_					0	0	0			REV__ENST00000313117.10_2_2:38970876-38971032:-|nuORF	REV__ENST00000313117.10_2_2:38970876-38971032:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.8148193359375	2	545.840208	1089.66586	1.9394	0.0010586	0.54434	0.00029712	2.4837	0.0013557	545.8402977708053	85.154	0.70254	85.154	84.882	85.585	0					37	16	3	0	0	0	0.027462	1	8917	8917		19.997	0	1	765850	+		20758	24365	16941	16964	23112	23112					0.12461703876556385
ISLGSIEAAI	10	Unmodified	_ISLGSIEAAI_					0	0	0			REV__ENSG00000167971|ENST00000343516|CASKIN1	REV__ENSG00000167971|ENST00000343516|CASKIN1	MULTI-MSMS	OvCa9_classI_Rep2	2	487.2803039550781	2	487.281857	972.549162	-0.17128	-8.3459E-05	-0.55791	-0.00027186	-0.72919	-0.00035532	487.2815643110269	94.239	2.596	93.14	92.644	95.24	-1.0995					171	51	6	0	0	0	0.26627	1	8463	8463		84.916	12.036	1	3277500	+		20759	21324	16942	16965	23113	23113					0.061789208661252815
ISLGSIEAAI	10	Unmodified	_ISLGSIEAAI_					0	0	0			REV__ENSG00000167971|ENST00000343516|CASKIN1	REV__ENSG00000167971|ENST00000343516|CASKIN1	MULTI-MSMS	OvCa9_classI_Rep3	3	487.28277587890625	2	487.281857	972.549162	-1.0485	-0.0005109	0.41711	0.00020325	-0.63137	-0.00030765	487.2819843698998	95.08	2.6649	93.185	92.561	95.226	-1.8956					196	52	7	0	0	0	0.18827	1	6210	6210		96.19	3.0472	1	4110600	+		20760	21324	16942	16965	23114	23114					0.061789208661252815
ISLIQNAIN	9	Unmodified	_ISLIQNAIN_					0	0	0			REV__tr|A0A7D6VM78|A0A7D6VM78_9CLOTTransportpermeaseproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14290PE=3SV=1	REV__tr|A0A7D6VM78|A0A7D6VM78_9CLOTTransportpermeaseproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14290PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.2872009277344	2	493.287474	984.560395	0.46838	0.00023105	-0.89527	-0.00044163	-0.42689	-0.00021058	493.2869754558419	112.68	1.3465	111.17	110.74	112.08	-1.5111					73	26	4	0	0	0	0.28934	1	10432	10432		64.207	2.0999	1	486740	+		20761	31126	16943	16966	23115	23115					0.06749742960266758
ISLKGQRIYE	10	Unmodified	_ISLKGQRIYE_					0	0	0			REV__nc|ENSG00000090376|Q9Y616-2|IRAK3	REV__nc|ENSG00000090376|Q9Y616-2|IRAK3	MULTI-MSMS	OvCa99_classI_Rep5	1	603.8462524414062	2	603.845687	1205.67682	-0.22005	-0.00013287	0.2312	0.00013961	0.011158	6.7377E-06	603.84567864929	55.688	0.65285	55.688	55.358	56.011	0					36	15	3	0	0	0	0.35539	1	4572	4572		62.107	0	1	1838700	+		20762	17221	16944	16967	23116	23116					0.08221061460199053
ISLKHLGTEI	10	Unmodified	_ISLKHLGTEI_					0	0	0		nc|ENSG00000095383|Q9BYX2-3|TBC1D2;nc|ENSG00000095383|Q9BYX2-2|TBC1D2;ENSG00000095383|ENST00000465784|TBC1D2;TBC1D2|p.Q313Lfs*43|1|0.05|ENSG00000095383|chr9:98228992-98228993|-/ATCA|frameshift_variant;TBC1D2|p.Q313Hfs*44|1|0.06|ENSG00000095383|chr9:98228991-98228992|-/GCCCAGA|frameshift_variant	nc|ENSG00000095383|Q9BYX2-3|TBC1D2	nc|ENSG00000095383|Q9BYX2-3|TBC1D2	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.790283203125	2	555.829506	1109.64446	1.8826	0.0010464	2.8104	0.0015621	4.6929	0.0026085	555.8309254971347	116.89	0.49579	116.89	116.68	117.18	0					21	10	3	0	0	0	0.026659	1	13402	13402		37.812	3.639	1	174760			20763	1927	16945	16968	23117	23117					0.09402274057174509
ISLKSGLYTNC	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ISLKSGLYTNC_					1	0	0			REV__ENST00000302823.7_1_2:204732513-204732561:+|nuORF	REV__ENST00000302823.7_1_2:204732513-204732561:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	620.817626953125	2	620.815738	1239.61692	-0.0017921	-1.1125E-06	2.6048	0.0016171	2.603	0.001616	620.8173961382302	38.899	2.1681	35.973	35.7	37.868	-2.9264					130	42	5	0	0	0	0.5466	1	1541	1541		49.536	6.6718	1	2444800	+		20764	24265	16946	16969	23118	23118					0.006700027346823845
ISLKTYMF	8	Unmodified	_ISLKTYMF_					0	0	0			REV__tr|A0A553SNB0|A0A553SNB0_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_24135PE=4SV=1	REV__tr|A0A553SNB0|A0A553SNB0_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_24135PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	501.7728576660156	2	501.770071	1001.52559	-0.05723	-2.8716E-05	3.3001	0.0016559	3.2428	0.0016272	501.7718446852214	71.016	0.39114	71.016	70.8	71.191	0					21	9	3	0	0	0	0.62934	1	6840	6840		57.811	1.0902	1	3563600	+		20765	30404	16947	16970	23119	23119					0.024887838279710195
ISLKTYMF	8	Unmodified	_ISLKTYMF_					0	0	0			REV__tr|A0A553SNB0|A0A553SNB0_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_24135PE=4SV=1	REV__tr|A0A553SNB0|A0A553SNB0_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_24135PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	501.770071	1001.52559	-1.1824	-0.00059329	5.7801	0.0029003	4.5978	0.002307	501.77290184572115	73.883	0.1919	70.652	70.531	70.723	-3.2308	-0.1819	0.0022924	NaN	57.811	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18026	+		20766	30404	16947	16970							0.024887838279710195
ISLLGQSIAL	10	Unmodified	_ISLLGQSIAL_					0	0	0			REV__ENST00000478296.5_1_3:75787041-75787971:-|nuORF	REV__ENST00000478296.5_1_3:75787041-75787971:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.8134765625	2	507.813325	1013.6121	-3.6205	-0.0018386	3.3476	0.0017	-0.27295	-0.00013861	507.8149170014654	151.23	0.95454	151.01	150.75	151.7	-0.22697					37	18	3	0	0	0	0.75313	1	15355	15355		24.519	0.31644	1	62074	+		20767	26413	16948	16971	23120	23120					0.10583486654184071
ISLLHQKK	8	Unmodified	_ISLLHQKK_					0	0	0			REV__tr|A0A7D6ZGJ8|A0A7D6ZGJ8_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18950PE=4SV=1	REV__tr|A0A7D6ZGJ8|A0A7D6ZGJ8_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18950PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.28643798828125	2	483.808377	965.6022	2.0671	0.0010001	0.52183	0.00025247	2.589	0.0012526	483.8085504849792	100.22	0.33757	100.22	100.07	100.4	0					11	7	2	0	0	0	0.028476	1	11102	11102		33.516	0	1	172520	+		20768	32003	16949	16972	23121	23121					0.11802343439467222
ISLLLYFN	8	Unmodified	_ISLLLYFN_					0	0	0			REV__nc|ENSG00000082929|Q99440|LINC01587	REV__nc|ENSG00000082929|Q99440|LINC01587	MULTI-SECPEP	OvCa9_classI_Rep2	2	491.7681579589844	2	491.784036	981.553519	-0.25011	-0.000123	0.2433	0.00011965	-0.0068119	-3.35E-06	491.78425088967447	67.596	0.24776	64.935	64.842	65.09	-2.661					8	4	2	0	0	0	0.028476	1	5301	5301		55.504	13.03	1	6075.1	+		20769	28742	16950	16973	23122	23122					0.062004300797070755
ISLLNITEP	9	Unmodified	_ISLLNITEP_					0	0	0		ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	MULTI-MSMS	OvCa99_classI_Rep5	1	500.29168701171875	2	500.289682	998.564812	2.319	0.0011602	0.095815	4.7935E-05	2.4148	0.0012081	500.28961925925364	106.42	1.1009	106.42	105.75	106.85	0					54	24	4	0	0	0	0.053172	1	11988	11988		116.9	0	1	3808000			20770	6178	16951	16974	23123	23123					0.06547207383175646
ISLLTEAVPQ	10	Unmodified	_ISLLTEAVPQ_					0	0	0		ENST00000479588.1_1_3:62280373-62280445:-|nuORF;ENST00000475371.5_1_3:62249776-62302793:-|nuORF	ENST00000479588.1_1_3:62280373-62280445:-|nuORF	ENST00000479588.1_1_3:62280373-62280445:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.8329467773438	2	535.808239	1069.60193	2.2778	0.0012205	0.63514	0.00034031	2.913	0.0015608	535.8090310044179	102.24	0.76725	102.24	101.87	102.63	0					49	17	4	0	0	0	0.026681	1	11440	11440		44.377	11.565	1	2539900			20771	12447	16952	16975	23124	23124					0.06990878928945676
ISLMYTLF	8	Unmodified	_ISLMYTLF_					0	0	0			REV__ENSG00000179626|ENST00000641569|OR6C4	REV__ENSG00000179626|ENST00000641569|OR6C4	MULTI-MSMS	OvCa99_classI_Rep5	1	494.26934814453125	2	494.264622	986.514691	1.5741	0.00077803	3.4419	0.0017012	5.0161	0.0024793	494.26613856296234	125.54	0.47206	125.54	125.33	125.81	0					19	11	2	0	0	0	0.59148	1	14511	14511		65.803	5.5092	1	199240	+		20772	22132	16953	16976	23125	23125					0.02089381453686201
ISLNYLIQ	8	Unmodified	_ISLNYLIQ_					0	0	0			REV__ENST00000544547.5_1_2:109300823-109300958:+|nuORF	REV__ENST00000544547.5_1_2:109300823-109300958:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	482.2792053222656	2	482.279118	962.543683	-0.15422	-7.4376E-05	-0.28862	-0.0001392	-0.44284	-0.00021357	482.27892050423463	107.25	2.5562	106.94	106.62	109.18	-0.30836					127	51	5	0	0	0	0.34187	1	10086	10086		99.375	3.1845	1	1468300	+		20773	27399	16954	16977	23126	23126					0.06091242074330694
ISLNYLQI	8	Unmodified	_ISLNYLQI_					0	0	0			REV__nc|ENSG00000147724|Q49AJ0-2|FAM135B	REV__nc|ENSG00000147724|Q49AJ0-2|FAM135B	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.2791748046875	2	482.279118	962.543683	-1.2317	-0.000594	0.75122	0.0003623	-0.48043	-0.0002317	482.2794086008931	108.77	2.8599	107.05	106.72	109.58	-1.7256					132	54	5	0	0	0	0.56195	1	10049	10049		71.296	0	1	1697700	+		20774	20082	16955	16978	23127	23127					0.06091242074330694
ISLPYMQL	8	Unmodified	_ISLPYMQL_					0	0	0			REV__chr20:5115356-5115449|286|14.04|0.78|4.18|-|0|None,PCNA|1	REV__chr20:5115356-5115449|286|14.04|0.78|4.18|-|0|None,PCNA|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	482.2800598144531	2	482.762246	963.50994	-2.1445	-0.0010353	2.0995	0.0010136	-0.044996	-2.1722E-05	482.7632591549465	108.34	1.2023	106.62	106.13	107.33	-1.7256					29	23	2	0	0	0	0.028476	1	9974	9974		73.975	0	1	20416	+		20775	16023	16956	16979	23128	23128					0.02672497310925337
ISLQLSKLN	9	Unmodified	_ISLQLSKLN_					0	0	0			REV__tr|A0A553SRL4|A0A553SRL4_NIACIMn2+/Zn2+ABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_01185PE=3SV=1	REV__tr|A0A553SRL4|A0A553SRL4_NIACIMn2+/Zn2+ABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_01185PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	508.31201171875	2	508.310949	1014.60735	0.74681	0.00037961	-0.77067	-0.00039174	-0.023862	-1.2129E-05	508.3103938132572	127.39	0.84045	127.16	126.89	127.73	-0.2359					40	16	4	0	0	0	0.1243	1	12462	12462		90.601	4.739	1	96736	+		20776	30745	16957	16980	23129	23129					0.10062602511425212
ISLQTLKKEYK	11	Unmodified	_ISLQTLKKEYK_					0	0	0		ENST00000396503.7_1_16:11931646-11945380:-|nuORF;ENSG00000171490|ENST00000571133|RSL1D1	ENST00000396503.7_1_16:11931646-11945380:-|nuORF	ENST00000396503.7_1_16:11931646-11945380:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	450.7613830566406	3	450.937894	1349.79185	0.54443	0.0002455	-2.7312	-0.0012316	-2.1868	-0.0009861	450.93645997422794	62.617	1.031	59.873	59.449	60.48	-2.7444					29	19	2	0	0	0	0.026024	1	4690	4690		14.779	5.9795	1	92633			20777	7203	16958	16981	23130	23130					0.13094745871330815
ISLQTLKKEYK	11	Unmodified	_ISLQTLKKEYK_					0	0	0		ENST00000396503.7_1_16:11931646-11945380:-|nuORF;ENSG00000171490|ENST00000571133|RSL1D1	ENST00000396503.7_1_16:11931646-11945380:-|nuORF	ENST00000396503.7_1_16:11931646-11945380:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	450.937894	1349.79185	0.48438	0.00021843	-2.9378	-0.0013248	-2.4534	-0.0011063	450.9365708204592	63.812	0.96717	60.337	59.964	60.931	-3.475	0.2154	0.00097503	NaN	14.779	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142750			20778	7203	16958	16981							0.13094745871330815
ISLRASYKV	9	Unmodified	_ISLRASYKV_					0	0	0			REV__nc|ENSG00000091656|Q86UP3|ZFHX4	REV__nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.81103515625	2	518.811116	1035.60768	0.56129	0.0002912	-0.83769	-0.0004346	-0.27639	-0.0001434	518.8104326125663	110.25	2.3159	108.65	108.17	110.49	-1.6011					109	43	4	0	0	0	0.38969	1	10180	10180		52.937	5.2794	1	1267600	+		20779	17254	16959	16982	23131	23131					0.09130022231261137
ISLRFLTIP	9	Unmodified	_ISLRFLTIP_					0	0	0		ENST00000477386.1_1_X:14044301-14045241:-|nuORF	ENST00000477386.1_1_X:14044301-14045241:-|nuORF	ENST00000477386.1_1_X:14044301-14045241:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	530.3314208984375	2	530.331685	1058.64882	0.10186	5.402E-05	-0.28124	-0.00014915	-0.17938	-9.5129E-05	530.331407055981	130.5	1.1434	130.27	129.96	131.1	-0.22697					41	22	3	0	0	0	0.37135	1	12844	12844		54.776	3.5836	1	159590			20780	12477	16960	16983	23132	23132					0.12183783270756976
ISLRNSLSDYG	11	Unmodified	_ISLRNSLSDYG_					0	0	0			REV__ENST00000484638.1_1_20:19915775-19951501:+|nuORF	REV__ENST00000484638.1_1_20:19915775-19951501:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	408.8791809082031	3	408.878815	1223.61462	0.58573	0.00023949	-4.3904	-0.0017951	-3.8047	-0.0015557	408.87755963842943	59.74	2.2898	59.74	59.414	61.704	0					142	55	5	0	0	0	0.54737	1	5176	5176		49.466	13.148	1	48789000	+		20781	19094	16961	16984	23133	23133					0.011752903212027377
ISLRNSLSDYG	11	Unmodified	_ISLRNSLSDYG_					0	0	0			REV__ENST00000484638.1_1_20:19915775-19951501:+|nuORF	REV__ENST00000484638.1_1_20:19915775-19951501:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	408.878815	1223.61462	0.58573	0.00023949	-4.3904	-0.0017951	-3.8047	-0.0015557	408.87755963842943	59.74	2.2898	59.74	59.414	61.704	0	0	0	NaN	49.466	142	55	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48789000	+		20782	19094	16961	16984							0.011752903212027377
ISLTSFLKK	9	Unmodified	_ISLTSFLKK_					0	0	0			REV__ENST00000340589.4_1_4:89430402-89430654:-|nuORF	REV__ENST00000340589.4_1_4:89430402-89430654:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.8207397460938	2	518.823692	1035.63283	2.8361	0.0014714	-2.6614	-0.0013808	0.17472	9.0649E-05	518.8222455726516	134.35	1.2381	132.83	132.54	133.78	-1.5257					42	24	2	0	0	0	0.027462	1	13063	13063		35.618	0	1	116760	+		20783	24624	16962	16985	23134	23134					0.11644077033838585
ISLTSKNWQ	9	Unmodified	_ISLTSKNWQ_					0	0	0		ENSG00000137101|ENST00000259633|CD72	ENSG00000137101|ENST00000259633|CD72	ENSG00000137101|ENST00000259633|CD72	MULTI-MSMS	OvCa9_classI_Rep2	2	538.7882690429688	2	538.790381	1075.56621	-1.8784	-0.0010121	-1.4891	-0.00080232	-3.3675	-0.0018144	538.7895857705319	53.181	2.1324	50.367	49.739	51.872	-2.8139					85	42	3	0	0	0	0.56889	1	3583	3583		35.618	1.4457	1	95350			20784	4557	16963	16986	23135	23135					0.03144841471953441
ISMNGKTEKN	10	Unmodified	_ISMNGKTEKN_					0	0	0		tr|A0A7D6VVU8|A0A7D6VVU8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06485PE=4SV=1	tr|A0A7D6VVU8|A0A7D6VVU8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06485PE=4SV=1	tr|A0A7D6VVU8|A0A7D6VVU8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06485PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.7523193359375	2	561.284605	1120.55466	1.8112	0.0010166	-1.8293	-0.0010268	-0.018092	-1.0155E-05	561.2832336108486	91.117	0.72551	91.117	90.857	91.582	0					40	17	3	0	0	0	0.026602	1	9782	9782		47.96	0	1	1782700			20785	35236	16964	16987	23136	23136					-0.0007972361368047132
ISMPYKHL	8	Unmodified	_ISMPYKHL_					0	0	0		ENST00000449473.2_1_1:101552540-101552798:+|nuORF	ENST00000449473.2_1_1:101552540-101552798:+|nuORF	ENST00000449473.2_1_1:101552540-101552798:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	494.7701110839844	2	494.767863	987.521173	-0.08609	-4.2595E-05	2.363	0.0011691	2.2769	0.0011265	494.76877778645417	52.585	0.69601	52.585	52.347	53.043	0					32	15	3	0	0	0	0.47599	1	4127	4127		79.939	0.22664	1	1715800			20786	12026	16965	16988	23137	23137					0.026913194050507627
ISMQAPCLL	9	Unmodified	_ISMQAPCLL_					0	0	0			REV__ENST00000540608.5_1_18:21148944-21166448:-|nuORF	REV__ENST00000540608.5_1_18:21148944-21166448:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.2925109863281	2	488.253731	974.492909	0.56182	0.00027431	0.93286	0.00045547	1.4947	0.00072978	488.2538169857966	105.62	0.52213	105.62	105.4	105.92	0					19	11	3	0	0	0	0.026533	1	11858	11858		128.86	0	1	261770	+		20787	27351	16966	16989	23138	23138					0.004642534334607262
ISMQWWQQ	8	Unmodified	_ISMQWWQQ_					0	0	0		USP32|p.P757Lfs*7|1|0.07|ENSG00000170832|chr17:60211424-60211425|-/AAGTTCTGATCTCA|frameshift_variant;ENSG00000170832|ENST00000300896|USP32	USP32|p.P757Lfs*7|1|0.07|ENSG00000170832|chr17:60211424-60211425|-/AAGTTCTGATCTCA|frameshift_variant	USP32|p.P757Lfs*7|1|0.07|ENSG00000170832|chr17:60211424-60211425|-/AAGTTCTGATCTCA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.7688598632812	2	553.758027	1105.5015	1.5197	0.00084154	-0.50916	-0.00028195	1.0105	0.00055958	553.7576282322149	147.85	0.67838	147.85	147.6	148.28	0					31	12	3	0	0	0	0.028476	1	17295	17295		27.882	0	1	173280			20788	7140	16967	16990	23139	23139					-0.04703056605717393
ISNEFKVEV	9	Unmodified	_ISNEFKVEV_					0	0	0		nc|ENSG00000171603|O94985-2|CLSTN1;ENSG00000171603|ENST00000377298|CLSTN1;ENST00000477264.1_1_1:9790568-9793533:-|nuORF	nc|ENSG00000171603|O94985-2|CLSTN1	nc|ENSG00000171603|O94985-2|CLSTN1	MULTI-MSMS	OvCa9_classI_Rep3	3	532.7848510742188	2	532.784764	1063.55498	0.44689	0.0002381	-0.87747	-0.0004675	-0.43058	-0.00022941	532.7842757710703	72.943	2.2784	70.456	70.133	72.411	-2.4873					104	45	6	0	0	0	0.070405	1	3519	3519		107.01	2.9939	1	1035400			20789	7217	16968	16991	23140	23140					0.025740193777892273
ISNFHVLLL	9	Unmodified	_ISNFHVLLL_					0	0	0		FNBP4|p.E749Gfs*13|1|0.12|ENSG00000109920|chr11:47724541-47724541|T/-|frameshift_variant;ENSG00000109920|ENST00000263773|FNBP4;nc|ENSG00000109920|Q8N3X1-2|FNBP4;ENST00000525792.5_1_11:47746320-47755666:-|nuORF;ENST00000528388.5_1_11:47753749-47758242:-|nuORF	FNBP4|p.E749Gfs*13|1|0.12|ENSG00000109920|chr11:47724541-47724541|T/-|frameshift_variant	FNBP4|p.E749Gfs*13|1|0.12|ENSG00000109920|chr11:47724541-47724541|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.3165283203125	2	528.316035	1054.61752	-2.8025	-0.0014806	2.4129	0.0012748	-0.38964	-0.00020585	528.3171633575117	126.52	1.3823	125.1	124.68	126.06	-1.4143					49	27	3	0	0	0	0.34132	1	12047	12047		58.23	4.8785	1	67887			20790	2742	16969	16992	23141	23141					0.09239210236660256
ISNFHVLLL	9	Unmodified	_ISNFHVLLL_					0	0	0		FNBP4|p.E749Gfs*13|1|0.12|ENSG00000109920|chr11:47724541-47724541|T/-|frameshift_variant;ENSG00000109920|ENST00000263773|FNBP4;nc|ENSG00000109920|Q8N3X1-2|FNBP4;ENST00000525792.5_1_11:47746320-47755666:-|nuORF;ENST00000528388.5_1_11:47753749-47758242:-|nuORF	FNBP4|p.E749Gfs*13|1|0.12|ENSG00000109920|chr11:47724541-47724541|T/-|frameshift_variant	FNBP4|p.E749Gfs*13|1|0.12|ENSG00000109920|chr11:47724541-47724541|T/-|frameshift_variant	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	528.316035	1054.61752	0.053019	2.8011E-05	-0.14659	-7.7446E-05	-0.093572	-4.9436E-05	528.3157059665655	125.15	1.2365	124.92	124.61	125.85	-0.2359	-0.13829	-0.00045459	NaN	58.23	48	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62834			20791	2742	16969	16992							0.09239210236660256
ISNFHVLLL	9	Unmodified	_ISNFHVLLL_					0	0	0		FNBP4|p.E749Gfs*13|1|0.12|ENSG00000109920|chr11:47724541-47724541|T/-|frameshift_variant;ENSG00000109920|ENST00000263773|FNBP4;nc|ENSG00000109920|Q8N3X1-2|FNBP4;ENST00000525792.5_1_11:47746320-47755666:-|nuORF;ENST00000528388.5_1_11:47753749-47758242:-|nuORF	FNBP4|p.E749Gfs*13|1|0.12|ENSG00000109920|chr11:47724541-47724541|T/-|frameshift_variant	FNBP4|p.E749Gfs*13|1|0.12|ENSG00000109920|chr11:47724541-47724541|T/-|frameshift_variant	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	528.316035	1054.61752	1.0326	0.00054552	-1.4398	-0.00076065	-0.4072	-0.00021513	528.3152571628624	126.22	1.3606	125.15	124.86	126.22	-1.0715	0.09225	-0.001821	NaN	58.23	51	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77869			20792	2742	16969	16992							0.09239210236660256
ISNFLEKI	8	Unmodified	_ISNFLEKI_					0	0	0		tr|A0A7D6ZVX7|A0A7D6ZVX7_9CLOT2-oxoacid:acceptoroxidoreductasesubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_15590PE=4SV=1	tr|A0A7D6ZVX7|A0A7D6ZVX7_9CLOT2-oxoacid:acceptoroxidoreductasesubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_15590PE=4SV=1	tr|A0A7D6ZVX7|A0A7D6ZVX7_9CLOT2-oxoacid:acceptoroxidoreductasesubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_15590PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	482.27960205078125	2	482.279118	962.543683	-0.15422	-7.4376E-05	-0.28862	-0.0001392	-0.44284	-0.00021357	482.27892050423463	107.25	2.5562	106.94	106.62	109.18	-0.30836					127	51	5	0	0	0	0.082392	3	10005	10005;10023;10036		148.04	14.156	1	1468300			20793	35819	16970	16993	23142;23143;23144	23142					0.06091242074330694
ISNFLEKI	8	Unmodified	_ISNFLEKI_					0	0	0		tr|A0A7D6ZVX7|A0A7D6ZVX7_9CLOT2-oxoacid:acceptoroxidoreductasesubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_15590PE=4SV=1	tr|A0A7D6ZVX7|A0A7D6ZVX7_9CLOT2-oxoacid:acceptoroxidoreductasesubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_15590PE=4SV=1	tr|A0A7D6ZVX7|A0A7D6ZVX7_9CLOT2-oxoacid:acceptoroxidoreductasesubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_15590PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	482.2786865234375	2	482.279118	962.543683	0.066578	3.2109E-05	-0.52329	-0.00025237	-0.45671	-0.00022026	482.2788004272215	108.2	2.8648	107	106.64	109.5	-1.1978					126	54	4	0	0	0	0.11522	3	7714	7708;7714;7720		139.97	5.1597	1	1495400			20794	35819	16970	16993	23145;23146;23147	23146					0.06091242074330694
ISNFLEKI	8	Unmodified	_ISNFLEKI_					0	0	0		tr|A0A7D6ZVX7|A0A7D6ZVX7_9CLOT2-oxoacid:acceptoroxidoreductasesubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_15590PE=4SV=1	tr|A0A7D6ZVX7|A0A7D6ZVX7_9CLOT2-oxoacid:acceptoroxidoreductasesubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_15590PE=4SV=1	tr|A0A7D6ZVX7|A0A7D6ZVX7_9CLOT2-oxoacid:acceptoroxidoreductasesubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_15590PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.2801208496094	2	482.279118	962.543683	-1.2317	-0.000594	0.75122	0.0003623	-0.48043	-0.0002317	482.2794086008931	108.77	2.8599	107.05	106.72	109.58	-1.7256					132	54	5	0	0	0	0.48084	1	10024	10024		79.451	5.4763	1	1697700			20795	35819	16970	16993	23148	23148					0.06091242074330694
ISNGGNQIAL	10	Unmodified	_ISNGGNQIAL_					0	0	0		tr|A0A7D6ZV37|A0A7D6ZV37_9CLOTHAMPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12705PE=3SV=1	tr|A0A7D6ZV37|A0A7D6ZV37_9CLOTHAMPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12705PE=3SV=1	tr|A0A7D6ZV37|A0A7D6ZV37_9CLOTHAMPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12705PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	493.76611328125	2	493.766906	985.519259	0.035446	1.7502E-05	-0.50839	-0.00025103	-0.47295	-0.00023353	493.76662126445797	67.226	1.1895	64.565	63.95	65.139	-2.661					65	23	4	0	0	0	0.3094	4	5236	5236;5254;5260;5266		79.713	8.7443	1	1407400			20796	35790	16971	16994	23149;23150;23151;23152	23149					0.025919819208070294
ISNGGNQIAL	10	Unmodified	_ISNGGNQIAL_					0	0	0		tr|A0A7D6ZV37|A0A7D6ZV37_9CLOTHAMPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12705PE=3SV=1	tr|A0A7D6ZV37|A0A7D6ZV37_9CLOTHAMPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12705PE=3SV=1	tr|A0A7D6ZV37|A0A7D6ZV37_9CLOTHAMPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12705PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	493.7652282714844	2	493.766906	985.519259	-0.73998	-0.00036538	-0.23368	-0.00011539	-0.97367	-0.00048076	493.76710400194355	68.35	1.8857	65.73	65.18	67.066	-2.6203					109	37	6	0	0	0	0.45822	1	5386	5386		60.118	3.3972	1	960960			20797	35790	16971	16994	23153	23153					0.025919819208070294
ISNGGNQIAL	10	Unmodified	_ISNGGNQIAL_					0	0	0		tr|A0A7D6ZV37|A0A7D6ZV37_9CLOTHAMPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12705PE=3SV=1	tr|A0A7D6ZV37|A0A7D6ZV37_9CLOTHAMPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12705PE=3SV=1	tr|A0A7D6ZV37|A0A7D6ZV37_9CLOTHAMPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12705PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.76763916015625	2	493.766906	985.519259	1.3259	0.00065468	-2.1019	-0.0010379	-0.77606	-0.00038319	493.7658974298156	67.896	1.3245	64.405	63.938	65.262	-3.4902					78	26	5	0	0	0	0.19075	4	5017	4994;5005;5017;5043		95.815	17.491	1	6506900			20798	35790	16971	16994	23154;23155;23156;23157	23156					0.025919819208070294
ISNGGNQIAL	10	Unmodified	_ISNGGNQIAL_					0	0	0		tr|A0A7D6ZV37|A0A7D6ZV37_9CLOTHAMPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12705PE=3SV=1	tr|A0A7D6ZV37|A0A7D6ZV37_9CLOTHAMPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12705PE=3SV=1	tr|A0A7D6ZV37|A0A7D6ZV37_9CLOTHAMPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12705PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.7676696777344	2	493.766906	985.519259	-0.2047	-0.00010108	-1.2694	-0.00062678	-1.4741	-0.00072786	493.7666268521124	69.087	1.8109	65.596	65.212	67.023	-3.4902					122	36	6	0	0	0	0.15262	2	5149	5149;5173		101.6	6.897	1	4197400			20799	35790	16971	16994	23158;23159	23158					0.025919819208070294
ISNGRIEV	8	Unmodified	_ISNGRIEV_					0	0	0			REV__nc|ENSG00000224543|A8MWD9|SNRPGP15	REV__nc|ENSG00000224543|A8MWD9|SNRPGP15	MSMS	OvCa9_classI_Rep4_	4	444.2516174316406	2	444.250892	886.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.413	1	61.927	61.427	62.427	-3.4854								0	0	0	0.28835	1	4705	4705		96.19	10.831	1		+		20800	29138	16972	16995	23160	23160					0.03944614237661881
ISNITLLLC	9	Unmodified	_ISNITLLLC_					0	0	0		ENSG00000163867|ENST00000357182|ZMYM6;nc|ENSG00000163867|O95789-5|ZMYM6;ENST00000493328.5_1_1:35452707-35454621:-|nuORF	ENSG00000163867|ENST00000357182|ZMYM6	ENSG00000163867|ENST00000357182|ZMYM6	MULTI-MSMS	OvCa9_classI_Rep2	2	495.2868957519531	2	495.288628	988.562703	0.33859	0.0001677	-4.1313	-0.0020462	-3.7928	-0.0018785	495.28647269641976	109.21	1.5826	109.04	108.72	110.3	-0.17351					86	31	5	0	0	0	0.42676	1	10281	10281		49.442	5.3247	1	489630			20801	6367	16973	16996	23161	23161					0.06796455373751087
ISNLADYFAI	10	Unmodified	_ISNLADYFAI_					0	0	0			REV__ENSG00000101871|ENST00000317552|MID1	REV__ENSG00000101871|ENST00000317552|MID1	MULTI-MSMS	OvCa9_classI_Rep2	2	563.7916870117188	2	563.792589	1125.57063	1.9225	0.0010839	-2.4477	-0.00138	-0.52524	-0.00029613	563.7910966326856	87.996	1.2748	86.58	86.155	87.43	-1.4156					83	25	4	0	0	0	0.5675	1	7722	7722		45.972	1.5951	1	1009300	+		20802	17523	16974	16997	23162	23162					0.012863058948369144
ISNLDLNR	8	Unmodified	_ISNLDLNR_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000038253	REV__CON__ENSEMBL:ENSBTAP00000038253	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.7740783691406	2	472.761623	943.508694	0.55168	0.00026081	-0.84069	-0.00039744	-0.289	-0.00013663	472.7613042385889	58.732	1.1983	55.34	54.902	56.1	-3.392					59	23	5	0	0	0	0.028476	1	3845	3845		71.296	0	1	256500	+	+	20803	16178	16975	16998	23163	23163					0.03467999266365496
ISNLLLNIEE	10	Unmodified	_ISNLLLNIEE_					0	0	0		tr|A0A7D6VXP0|A0A7D6VXP0_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09465PE=4SV=1	tr|A0A7D6VXP0|A0A7D6VXP0_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09465PE=4SV=1	tr|A0A7D6VXP0|A0A7D6VXP0_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09465PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.3240966796875	2	579.324254	1156.63395	-1.8864	-0.0010928	-0.92101	-0.00053357	-2.8074	-0.0016264	579.3237390390577	50.507	2.0874	47.366	46.922	49.01	-3.1416					110	40	5	0	0	0	0.42082	1	2900	2900		65.465	7.2355	1	2222100			20804	35294	16976	16999	23164	23164					0.061902466120727695
ISNLPSWIY	9	Unmodified	_ISNLPSWIY_					0	0	0		ENST00000533802.5_2_11:43855633-43876795:+|nuORF;ENST00000533090.6_2_11:43852474-43876795:+|nuORF;ENSG00000149084|ENST00000278353|HSD17B12	ENST00000533802.5_2_11:43855633-43876795:+|nuORF	ENST00000533802.5_2_11:43855633-43876795:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.7637329101562	2	546.78985	1091.56515	-1.0205	-0.000558	2.7831	0.0015217	1.7626	0.00096374	546.7923913586692	69.427	0.44075	65.946	65.713	66.153	-3.4812					11	8	2	0	0	0	0.027462	1	5211	5211		30.504	2.6214	1	26078			20805	5438	16977	17000	23165	23165					0.023026271030403223
ISNLVGLKK	9	Unmodified	_ISNLVGLKK_					0	0	0			REV__tr|A0A7D7A5B2|A0A7D7A5B2_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06525PE=4SV=1	REV__tr|A0A7D7A5B2|A0A7D7A5B2_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06525PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	486.314697265625	2	486.316035	970.617516	-1.0603	-0.00051562	0.87069	0.00042343	-0.18957	-9.2189E-05	486.31628594803936	50.625	1.6844	47.831	47.43	49.115	-2.794					77	33	4	0	0	0	0.26076	1	3293	3293		67.494	12.717	1	433010	+		20806	32634	16978	17001	23166	23166					0.13103210236658924
ISNLVNESRS	10	Unmodified	_ISNLVNESRS_					0	0	0			REV__MER50_dup1957|chr13:22893204-22893715:+|1.7221420676472057|0.1175728833499881|3.87|418.0|17|1|anti-sense	REV__MER50_dup1957|chr13:22893204-22893715:+|1.7221420676472057|0.1175728833499881|3.87|418.0|17|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	559.7984619140625	2	559.793652	1117.57275	-0.18411	-0.00010306	3.4495	0.001931	3.2654	0.0018279	559.795482047263	80.024	1.679	77.684	77.36	79.039	-2.3399					74	32	3	0	0	0	0.26424	1	4377	4377		85.161	2.4103	1	1117400	+		20807	28653	16979	17002	23167	23167					0.01866734632653788
ISNNRTLEL	9	Unmodified	_ISNNRTLEL_					0	0	0		ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OvCa9_classI_Rep2	2	530.2936401367188	2	530.293288	1058.57202	-0.54783	-0.00029051	0.25053	0.00013285	-0.2973	-0.00015766	530.2933534904101	72.433	2.4044	69.926	69.226	71.631	-2.5071					119	45	5	0	0	0	0.13326	1	5869	5869		88.177	8.4643	1	852840			20808	1949	16980	17003	23168	23168					0.04507939983614051
ISNNRTLEL	9	Unmodified	_ISNNRTLEL_					0	0	0		ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.2949829101562	2	530.293288	1058.57202	-1.7292	-0.00091697	0.77811	0.00041263	-0.95106	-0.00050434	530.2936572903274	73.496	2.062	70.1	69.785	71.847	-3.3961					124	42	5	0	0	0	0.046778	3	5691	5691;5701;5715		120.87	3.0161	1	3056900			20809	1949	16980	17003	23169;23170;23171	23169					0.04507939983614051
ISNPIPIKV	9	Unmodified	_ISNPIPIKV_					0	0	0		nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.7914733886719	2	490.810585	979.606617	-0.68711	-0.00033724	-0.24778	-0.00012161	-0.93489	-0.00045885	490.81018371292663	100.78	1.1658	98.513	98.238	99.404	-2.2665					45	23	4	0	0	0	0.027462	1	9023	9023		51.335	5.3835	1	207190			20810	8622	16981	17004	23172	23172					0.11599807862364742
ISNPIPIKV	9	Unmodified	_ISNPIPIKV_					0	0	0		nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	490.810585	979.606617	-0.2335	-0.0001146	-0.09037	-4.4355E-05	-0.32387	-0.00015896	490.8103543195112	99.518	0.89319	98.688	98.418	99.311	-0.83051	0.043667	0.00014124	NaN	74.255	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171670			20811	8622	16981	17004							0.11599807862364742
ISNPIPIKV	9	Unmodified	_ISNPIPIKV_					0	0	0		nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	490.810585	979.606617	-0.99838	-0.00049001	-1.1041	-0.00054189	-2.1024	-0.0010319	490.8098272945531	100.34	1.1737	98.731	98.377	99.551	-1.6053	0.087241	-0.00085383	NaN	74.255	40	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197590			20812	8622	16981	17004							0.11599807862364742
ISNPKKIEV	9	Unmodified	_ISNPKKIEV_					0	0	0		ENSG00000123572|ENST00000243300|NRK;nc|ENSG00000123572|Q7Z2Y5-2|NRK	ENSG00000123572|ENST00000243300|NRK	ENSG00000123572|ENST00000243300|NRK	MULTI-MSMS	OvCa9_classI_Rep2	2	514.3107299804688	2	514.310949	1026.60735	-1.0854	-0.00055823	0.5068	0.00026065	-0.57861	-0.00029758	514.3111587898388	52.512	1.881	49.699	49.345	51.226	-2.8129					64	37	2	0	0	0	0.075543	5	3507	3496;3502;3507;3514;3521		104.06	32.179	1	592000			20813	3606	16982	17005	23173;23174;23175;23176;23177	23175					0.09510602511409161
ISNPKKIEV	9	Unmodified	_ISNPKKIEV_					0	0	0		ENSG00000123572|ENST00000243300|NRK;nc|ENSG00000123572|Q7Z2Y5-2|NRK	ENSG00000123572|ENST00000243300|NRK	ENSG00000123572|ENST00000243300|NRK	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.3118896484375	2	514.310949	1026.60735	-0.82174	-0.00042263	0.017687	9.0967E-06	-0.80406	-0.00041353	514.310966463184	52.835	1.8731	49.627	49.4	51.273	-3.208					72	36	2	0	0	0	0.056671	4	3189	3179;3189;3200;3213		114.89	43.017	1	2119300			20814	3606	16982	17005	23178;23179;23180;23181	23179					0.09510602511409161
ISNQLKSPI	9	Unmodified	_ISNQLKSPI_					0	0	0			REV__tr|A0A7D6ZJ43|A0A7D6ZJ43_9CLOTDUF3969familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07095PE=4SV=1	REV__tr|A0A7D6ZJ43|A0A7D6ZJ43_9CLOTDUF3969familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07095PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.27825927734375	2	500.295299	998.576045	-0.056215	-2.8124E-05	-0.2675	-0.00013383	-0.32371	-0.00016195	500.29511871620775	70.922	0.34757	70.922	70.761	71.109	0					12	8	2	0	0	0	0.027185	1	6857	6857		71.877	0	1	270460	+		20815	32077	16983	17006	23182	23182					0.07670029477310436
ISNQLKSPI	9	Unmodified	_ISNQLKSPI_					0	0	0			REV__tr|A0A7D6ZJ43|A0A7D6ZJ43_9CLOTDUF3969familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07095PE=4SV=1	REV__tr|A0A7D6ZJ43|A0A7D6ZJ43_9CLOTDUF3969familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07095PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	500.295299	998.576045	-0.41393	-0.00020709	-0.35692	-0.00017856	-0.77084	-0.00038565	500.2948725931557	72.935	1.0953	70.535	70.011	71.106	-2.3999	-0.19642	-5.8868E-05	NaN	71.877	32	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44203	+		20816	32077	16983	17006							0.07670029477310436
ISNQLKSPI	9	Unmodified	_ISNQLKSPI_					0	0	0			REV__tr|A0A7D6ZJ43|A0A7D6ZJ43_9CLOTDUF3969familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07095PE=4SV=1	REV__tr|A0A7D6ZJ43|A0A7D6ZJ43_9CLOTDUF3969familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07095PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	500.295299	998.576045	-0.92761	-0.00046408	-0.23917	-0.00011965	-1.1668	-0.00058373	500.2949245312378	73.968	1.0485	70.738	70.434	71.483	-3.2308	0.0060848	5.8949E-05	NaN	71.877	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157550	+		20817	32077	16983	17006							0.07670029477310436
ISNSGCSSNL	10	Unmodified	_ISNSGCSSNL_					0	0	0			REV__ENSG00000100485|ENST00000216373|SOS2	REV__ENSG00000100485|ENST00000216373|SOS2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.7704162597656	2	491.218931	980.423309	0.068831	3.3811E-05	-3.1506	-0.0015476	-3.0817	-0.0015138	491.21731260471165	47.037	1.0654	43.964	43.501	44.566	-3.0724					31	20	2	0	0	0	0.026624	1	2495	2495		38.754	15.711	1	56582	+		20818	17422	16984	17007	23183	23183					-0.06768533981585279
ISNSHPLSL	9	Unmodified	_ISNSHPLSL_					0	0	0		ENST00000599680.1_1_19:50162907-50164763:-|nuORF;ENST00000597636.5_1_19:50162907-50164809:-|nuORF;nc|ENSG00000126456|Q14653-3|IRF3;nc|ENSG00000126456|Q14653-2|IRF3;ENSG00000126456|ENST00000377139|IRF3	ENST00000599680.1_1_19:50162907-50164763:-|nuORF	ENST00000599680.1_1_19:50162907-50164763:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.2645263671875	2	484.263999	966.513445	-0.19275	-9.3343E-05	-0.10209	-4.9438E-05	-0.29484	-0.00014278	484.26378116875446	74.728	2.3975	71.497	70.723	73.12	-3.2308					134	49	5	0	0	0	0.043101	2	5857	5847;5857		124.08	7.7838	1	710640			20819	3780	16985	17008	23184;23185	23185					0.028848834091377284
ISNSLAQLV	9	Unmodified	_ISNSLAQLV_					0	0	0			REV__tr|A0A553SHK6|A0A553SHK6_NIACIHD-GYPdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13160PE=4SV=1	REV__tr|A0A553SHK6|A0A553SHK6_NIACIHD-GYPdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13160PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.7740783691406	2	472.7742	943.533846	0.54865	0.00025939	-0.33479	-0.00015828	0.21386	0.00010111	472.7738697966431	58.465	1.1991	55.073	54.852	56.051	-3.392					52	23	3	0	0	0	0.16562	1	3845	3845		82.241	2.5279	1	328440	+		20820	29810	16986	17009	23186	23186					0.05982054068931575
ISNTIKVIN	9	Unmodified	_ISNTIKVIN_					0	0	0		tr|A0A7D6W0X9|A0A7D6W0X9_9CLOTDUF2812domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01520PE=4SV=1	tr|A0A7D6W0X9|A0A7D6W0X9_9CLOTDUF2812domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01520PE=4SV=1	tr|A0A7D6W0X9|A0A7D6W0X9_9CLOTDUF2812domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01520PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	501.2853698730469	2	501.303124	1000.5917	-0.90622	-0.00045429	-3.3351	-0.0016719	-4.2413	-0.0021262	501.30166573292837	81.622	0.45049	79.299	79.057	79.507	-2.3226					12	8	2	0	0	0	0.027447	1	4541	4541		47.657	22.207	1	37014			20821	35391	16987	17010	23187	23187					0.09142315994381534
ISNWVDLTP	9	Unmodified	_ISNWVDLTP_					0	0	0			REV__nc|ENSG00000171617|O14682-2|ENC1	REV__nc|ENSG00000171617|O14682-2|ENC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.2623291015625	2	522.771657	1043.52876	-0.15087	-7.8869E-05	-4.3999	-0.0023002	-4.5508	-0.002379	522.7693315458803	60.929	0.35036	57.499	57.244	57.594	-3.43					11	6	2	0	0	0	0.027426	1	4127	4127		39.253	0	1	29078	+		20822	21632	16988	17011	23188	23188					0.008737502063240754
ISPELTAAAS	10	Unmodified	_ISPELTAAAS_					0	0	0			REV__nc|ENSG00000174325|Q969H9|DIRC1	REV__nc|ENSG00000174325|Q969H9|DIRC1	MULTI-MSMS	OvCa99_classI_Rep5	1	480.2574462890625	2	480.25584	958.497126	-0.023967	-1.151E-05	0.050783	2.4389E-05	0.026816	1.2878E-05	480.2556796391267	61.03	0.89648	61.03	60.646	61.542	0					62	20	4	0	0	0	0.46756	1	5368	5368		58.782	0.55203	1	3214800	+		20823	29012	16989	17012	23189	23189					0.016217574523807343
ISPHYDSLL	9	Unmodified	_ISPHYDSLL_					0	0	0		ENSG00000173599|ENST00000393960|PC;nc|ENSG00000173599|P11498-2|PC;PC|p.M443Afs*116|1|0.29|ENSG00000173599|chr11:66863815-66863816|-/GATCGCGCCACTGCACTCCAGC|frameshift_variant	ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.3058471679688	2	522.771657	1043.52876	-0.86935	-0.00045447	-3.2302	-0.0016887	-4.0996	-0.0021431	522.7697635008687	48.294	1.2432	45.186	44.938	46.181	-3.1077					28	23	2	0	0	0	0.027462	1	2637	2637		7.1934	0	1	35206			20824	7394	16990	17013	23190	23190					0.008737502063468128
ISPIDLIPDFI	11	Unmodified	_ISPIDLIPDFI_					0	0	0		tr|A0A553SPJ6|A0A553SPJ6_NIACIDUF1232domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26485PE=4SV=1	tr|A0A553SPJ6|A0A553SPJ6_NIACIDUF1232domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26485PE=4SV=1	tr|A0A553SPJ6|A0A553SPJ6_NIACIDUF1232domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26485PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	621.8522338867188	2	621.852647	1241.69074	-1.3438	-0.00083563	-1.5662	-0.00097394	-2.91	-0.0018096	621.8516570316827	72.675	1.4067	69.278	68.862	70.269	-3.3961					76	28	4	0	0	0	0.69455	1	5603	5603		31.53	0	1	697480			20825	34053	16991	17014	23191	23191					0.07956294168616296
ISPLDLSQP	9	Unmodified	_ISPLDLSQP_					0	0	0			REV__nc|ENSG00000103460|O15405-2|TOX3	REV__nc|ENSG00000103460|O15405-2|TOX3	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.26654052734375	2	485.266207	968.517862	-1.2201	-0.00059209	0.36292	0.00017611	-0.85722	-0.00041598	485.2663430336786	72.332	2.0813	68.936	68.569	70.65	-3.3961					119	42	3	0	0	0	0.31747	1	5614	5614		60.972	0	1	2530900	+		20826	17618	16992	17015	23192	23192					0.032343478320512986
ISPLRGVLL	9	Unmodified	_ISPLRGVLL_					0	0	0			REV__tr|A0A7D6VNP4|A0A7D6VNP4_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16150PE=3SV=1	REV__tr|A0A7D6VNP4|A0A7D6VNP4_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16150PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.318603515625	2	484.318577	966.622602	0.062107	3.008E-05	-0.5238	-0.00025369	-0.4617	-0.00022361	484.31822110517277	116.03	1.267	114.67	114.4	115.67	-1.3645					57	24	4	0	0	0	0.53483	1	10820	10820		39.253	2.0937	1	196150	+		20827	31198	16993	17016	23193	23193					0.13795514099274442
ISPLRGVLL	9	Unmodified	_ISPLRGVLL_					0	0	0			REV__tr|A0A7D6VNP4|A0A7D6VNP4_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16150PE=3SV=1	REV__tr|A0A7D6VNP4|A0A7D6VNP4_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16150PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.23681640625	2	484.318577	966.622602	-1.0983	-0.00053192	1.3068	0.00063291	0.20852	0.00010099	484.3191724608023	120.3	0.52283	118.95	118.77	119.29	-1.3444					17	9	2	0	0	0	0.027448	1	11291	11291		44.117	1.7207	1	31338	+		20828	31198	16993	17016	23194	23194					0.13795514099274442
ISPLRGVLL	9	Unmodified	_ISPLRGVLL_					0	0	0			REV__tr|A0A7D6VNP4|A0A7D6VNP4_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16150PE=3SV=1	REV__tr|A0A7D6VNP4|A0A7D6VNP4_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16150PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	484.318577	966.622602	-1.7073	-0.00082687	2.0607	0.00099803	0.35341	0.00017116	484.31939215767835	119.15	0.443	118.98	118.76	119.2	-0.17138	0.0091327	0.00057939	NaN	44.117	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18786	+		20829	31198	16993	17016							0.13795514099274442
ISPLRGVLL	9	Unmodified	_ISPLRGVLL_					0	0	0			REV__tr|A0A7D6VNP4|A0A7D6VNP4_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16150PE=3SV=1	REV__tr|A0A7D6VNP4|A0A7D6VNP4_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16150PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	484.318577	966.622602	0.71654	0.00034703	-0.38776	-0.0001878	0.32878	0.00015923	484.31834154640876	120.01	0.49138	118.98	118.87	119.36	-1.0271	0.0086353	-0.0017923	NaN	44.117	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15625	+		20830	31198	16993	17016							0.13795514099274442
ISQAWGPP	8	Unmodified	_ISQAWGPP_					0	0	0		ENST00000498611.5_1_22:50656167-50657252:-|nuORF;ENST00000439308.6_1_22:50656167-50658651:-|nuORF;ENST00000491449.5_1_22:50656167-50658502:-|nuORF;nc|ENSG00000128159|Q96RT7-3|TUBGCP6;ENSG00000128159|ENST00000248846|TUBGCP6	ENST00000498611.5_1_22:50656167-50657252:-|nuORF	ENST00000498611.5_1_22:50656167-50657252:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	428.22265625	2	428.221603	854.428653	2.5279	0.0010825	-0.48965	-0.00020968	2.0383	0.00087283	428.22120097602317	113.22	0.5267	113.22	112.97	113.5	0					22	12	3	0	0	0	0.57878	1	12914	12914		68.485	20.569	1	289810			20831	12828	16994	17017	23195	23195					-0.004384423368151147
ISQDTILVA	9	Unmodified	_ISQDTILVA_					0	0	0			REV__ENSG00000203668|ENST00000366553|CHML	REV__ENSG00000203668|ENST00000366553|CHML	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.2729797363281	2	480.274032	958.533512	-1.1801	-0.00056679	0.84015	0.0004035	-0.33999	-0.00016329	480.2743460661196	95.508	1.7683	93.04	92.46	94.229	-2.4685					85	34	3	0	0	0	0.094616	1	8429	8429		98.629	8.2596	1	1062900	+		20832	15790	16995	17018	23196	23196					0.05258634349092972
ISQEEHSQ	8	Unmodified	_ISQEEHSQ_					0	0	0		nc|ENSG00000128596|Q96JN2-2|CCDC136;ENSG00000128596|ENST00000297788|CCDC136;nc|ENSG00000128596|Q96JN2-4|CCDC136;ENST00000480137.1_1_7:128450376-128461960:+|nuORF	nc|ENSG00000128596|Q96JN2-2|CCDC136	nc|ENSG00000128596|Q96JN2-2|CCDC136	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.2430725097656	2	479.217246	956.419939	-0.27814	-0.00013329	1.0288	0.00049302	0.75066	0.00035973	479.2174114226499	47.996	0.30474	47.996	47.812	48.116	0					10	6	2	0	0	0	0.028476	1	3502	3502		58.23	4.8785	1	244940			20833	3892	16996	17019	23197	23197					-0.06001460763945943
ISQEFTVTG	9	Unmodified	_ISQEFTVTG_					0	0	0			REV__HNRNPM|p.L411Sfs*117|1|0.08|ENSG00000099783|chr19:8485658-8485658|C/-|frameshift_variant	REV__HNRNPM|p.L411Sfs*117|1|0.08|ENSG00000099783|chr19:8485658-8485658|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.2269592285156	2	491.248015	980.481476	-0.42516	-0.00020886	1.8804	0.00092375	1.4552	0.00071489	491.24899333174415	33.349	0.44629	33.349	33.186	33.632	0					26	8	4	0	0	0	0.027462	1	1549	1549		15.642	0.77694	1	136300	+		20834	17332	16997	17020	23198	23198					-0.009545290646542526
ISQFLFLIIG	10	Unmodified	_ISQFLFLIIG_					0	0	0			REV__nc|ENSG00000162989|P48549-2|KCNJ3	REV__nc|ENSG00000162989|P48549-2|KCNJ3	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8432006835938	2	575.847167	1149.67978	-2.8608	-0.0016474	-4.0802	-0.0023496	-6.941	-0.0039969	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.7759	1	14726	14726		21.96	1.013	1	356230	+		20835	20796	16998	17021	23199	23199					0.11092936584987001
ISQKIRANK	9	Unmodified	_ISQKIRANK_					0	0	0			REV__tr|A0A553SMT4|A0A553SMT4_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_23125PE=4SV=1	REV__tr|A0A553SMT4|A0A553SMT4_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_23125PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	529.33056640625	2	529.327465	1056.64038	-1.2839	-0.00067959	3.3454	0.0017708	2.0615	0.0010912	529.3289487726382	57.146	1.093	54.354	54.08	55.173	-2.792					49	21	4	0	0	0	0.50149	1	4079	4079		42.396	1.618	1	235690	+		20836	30369	16999	17022	23200	23200					0.11432229354113588
ISQKRPLKALN	11	Unmodified	_ISQKRPLKALN_					0	0	0		ENST00000251241.8_1_17:57679886-57679970:+|nuORF	ENST00000251241.8_1_17:57679886-57679970:+|nuORF	ENST00000251241.8_1_17:57679886-57679970:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	422.531982421875	3	423.266345	1266.7772	-0.31974	-0.00013533	-1.7463	-0.00073914	-2.066	-0.00087447	423.2655023607645	20.798	0.80791	19.46	19.209	20.017	-1.3386					25	16	2	0	0	0	0.026324	1	129	129		11.932	0	1	35504			20837	9796	17000	17023	23201	23201					0.15448718513857784
ISQLKALLKD	10	Unmodified	_ISQLKALLKD_					0	0	0			REV__tr|A0A553SKL8|A0A553SKL8_NIACIGlycine--tRNAligasebetasubunitOS=NialliacirculansOX=1397GN=glySPE=3SV=1	REV__tr|A0A553SKL8|A0A553SKL8_NIACIGlycine--tRNAligasebetasubunitOS=NialliacirculansOX=1397GN=glySPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.2788696289062	2	564.852981	1127.69141	2.5092	0.0014173	-0.7697	-0.00043477	1.7395	0.00098257	565.3535589370117	86.993	0.24696	86.993	86.888	87.135	0					8	5	2	0	0	0	0.026867	1	9204	9204		35.152	4.5832	1	98042	+		20838	30138	17001	17024	23202	23202					0.13267133608314907
ISQRPSPET	9	Unmodified	_ISQRPSPET_					0	0	0		ENST00000530761.5_1_11:117857521-117870353:+|nuORF;ENSG00000110324|ENST00000227752|IL10RA	ENST00000530761.5_1_11:117857521-117870353:+|nuORF	ENST00000530761.5_1_11:117857521-117870353:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7630310058594	2	507.764363	1013.51417	-0.75433	-0.00038302	-1.6017	-0.00081327	-2.356	-0.0011963	507.7634972764376	115.15	1.4832	115.03	114.8	116.28	-0.11777					77	29	3	0	0	0	0.60342	1	10978	10978		31.53	0	1	179880			20839	2768	17002	17025	23203	23203					0.007956780581821477
ISQRVFLSF	9	Unmodified	_ISQRVFLSF_					0	0	0		ENST00000563180.1_1_16:85936568-85936664:+|nuORF	ENST00000563180.1_1_16:85936568-85936664:+|nuORF	ENST00000563180.1_1_16:85936568-85936664:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	549.7965698242188	2	548.811116	1095.60768	-0.96801	-0.00053125	4.2473	0.002331	3.2793	0.0017997	548.813145700244	89.423	0.85859	87.292	87.044	87.902	-2.1309					17	16	2	0	0	0	0.027462	1	5557	5557		21.96	0	1	9917.3			20840	13783	17003	17026	23204	23204					0.06370022231271832
ISQTFDHQI	9	Unmodified	_ISQTFDHQI_					0	0	0			REV__tr|A0A553SJ51|A0A553SJ51_NIACILacIfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_16130PE=4SV=1	REV__tr|A0A553SJ51|A0A553SJ51_NIACILacIfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_16130PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	544.7713623046875	2	544.772188	1087.52982	0.58838	0.00032053	-0.95956	-0.00052274	-0.37118	-0.00020221	544.7716121580505	42.458	1.4825	39.749	39.522	41.005	-2.7097					77	29	4	0	0	0	0.42576	1	2346	2346		49.536	3.5638	1	940130	+		20841	29964	17004	17027	23205	23205					-0.010440354247748473
ISQVFEIK	8	Unmodified	_ISQVFEIK_					0	0	0		ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	MULTI-MSMS	OvCa9_classI_Rep2	2	482.2790832519531	2	482.279118	962.543683	-0.15422	-7.4376E-05	-0.28862	-0.0001392	-0.44284	-0.00021357	482.27892050423463	107.25	2.5562	106.94	106.62	109.18	-0.30836					127	51	5	0	0	0	0.13946	1	10001	10001		134.81	3.7794	1	1468300			20842	8662	17005	17028	23206	23206					0.06091242074319325
ISQVFEIK	8	Unmodified	_ISQVFEIK_					0	0	0		ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	ENSG00000196937|ENST00000359943|FAM3C	MULTI-MSMS	OvCa9_classI_Rep3	3	482.2789306640625	2	482.279118	962.543683	0.066578	3.2109E-05	-0.52329	-0.00025237	-0.45671	-0.00022026	482.2788004272215	108.2	2.8648	107	106.64	109.5	-1.1978					126	54	4	0	0	0	0.28381	1	7754	7754		110.12	10.745	1	1495400			20843	8662	17005	17028	23207	23207					0.06091242074319325
ISRDIQAPD	9	Unmodified	_ISRDIQAPD_					0	0	0		LDLR-DNM2|7|fusion;LDLR-DNM2|8|fusion;LDLR-DNM2|5|fusion;LDLR-DNM2|6|fusion;LDLR-DNM2|3|fusion;LDLR-DNM2|4|fusion;LDLR-DNM2|9|fusion;LDLR-DNM2|10|fusion;LDLR-DNM2|1|fusion;LDLR-DNM2|2|fusion;nc|ENSG00000130164|P01130-2|LDLR;nc|ENSG00000130164|P01130-3|LDLR;nc|ENSG00000130164|P01130-6|LDLR;nc|ENSG00000130164|P01130-4|LDLR;nc|ENSG00000130164|P01130-5|LDLR;ENSG00000130164|ENST00000558518|LDLR	LDLR-DNM2|7|fusion	LDLR-DNM2|7|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7643127441406	2	507.764363	1013.51417	-1.4467	-0.00073458	-1.227	-0.00062303	-2.6737	-0.0013576	507.7636343810992	118.57	3.8509	117.22	115.9	119.75	-1.3444					112	73	2	0	0	0	0.50149	1	11172	11172		42.396	3.1433	1	81601			20844	14795	17006	17029	23208	23208					0.00795678058170779
ISREDLSPN	9	Unmodified	_ISREDLSPN_					0	0	0			REV__ENSG00000116199|ENST00000263733|FAM20B	REV__ENSG00000116199|ENST00000263733|FAM20B	MULTI-MSMS	OvCa9_classI_Rep2	2	515.7601928710938	2	515.76182	1029.50909	0.89792	0.00046311	-3.9799	-0.0020527	-3.082	-0.0015896	515.7596346022517	126.45	1.4315	126.22	125.75	127.18	-0.2359					75	28	3	0	0	0	0.27001	1	12318	12318		66.429	3.123	1	408360	+		20845	18292	17007	17030	23209	23209					-0.004486258044153146
ISREWGPPMAP	11	Unmodified	_ISREWGPPMAP_					0	0	0			REV__ENST00000593163.5_1_19:33991848-34002015:-|nuORF	REV__ENST00000593163.5_1_19:33991848-34002015:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	620.83349609375	2	620.81079	1239.60703	0.54288	0.00033703	-4.4798	-0.0027811	-3.9369	-0.0024441	620.8080813008295	99.671	2.7239	97.986	96.44	99.164	-1.685					127	53	4	0	0	0	0.025673	1	6762	6762		65.465	0	1	203180	+		20846	27960	17008	17031	23210	23210					-0.003191404800645614
ISRFSAEFD	9	Unmodified	_ISRFSAEFD_					0	0	0		ENSG00000184500|ENST00000394236|PROS1	ENSG00000184500|ENST00000394236|PROS1	ENSG00000184500|ENST00000394236|PROS1	MULTI-MSMS	OvCa9_classI_Rep3	3	536.2596435546875	2	536.258914	1070.50327	-0.025326	-1.3581E-05	-0.4813	-0.0002581	-0.50662	-0.00027168	536.2585904824281	86.379	2.2789	84.158	83.486	85.765	-2.2204					120	44	5	0	0	0	0.40818	1	5149	5149		51.193	5.2407	1	1336700			20847	8165	17009	17032	23211	23211					-0.029157243160852886
ISRGCAATANK	11	Unmodified	_ISRGCAATANK_					0	0	0			REV__nc|ENSG00000181626|A6NC57-2|ANKRD62	REV__nc|ENSG00000181626|A6NC57-2|ANKRD62	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.279052734375	2	546.28494	1090.55533	0.32343	0.00017668	1.8195	0.00099399	2.143	0.0011707	546.285265530355	101.89	0.60079	101.89	101.69	102.29	0					19	13	2	0	0	0	0.025265	1	11335	11335		42.864	0	1	333320	+		20848	22240	17010	17033	23212	23212					0.013671158259967342
ISRHRRTGH	9	Unmodified	_ISRHRRTGH_					0	0	0		ENST00000461023.5_1_16:343426-396314:-|nuORF;nc|ENSG00000103126|O15169-2|AXIN1;ENSG00000103126|ENST00000262320|AXIN1	ENST00000461023.5_1_16:343426-396314:-|nuORF	ENST00000461023.5_1_16:343426-396314:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.8153686523438	2	560.315755	1118.61696	1.9405	0.0010873	0.98626	0.00055262	2.9267	0.0016399	560.3154862150399	149.3	0.73235	149.3	149.01	149.75	0					20	14	2	0	0	0	0.027462	1	17496	17496		25.574	0	1	44258			20849	2283	17011	17034	23213	23213					0.062392283601639065
ISRIIYFILA	10	Unmodified	_ISRIIYFILA_					0	0	0			REV__tr|A0A553SJD2|A0A553SJD2_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_16570PE=3SV=1	REV__tr|A0A553SJD2|A0A553SJD2_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_16570PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	403.5863952636719	3	403.584903	1207.73288	2.5756	0.0010395	3.5557	0.001435	6.1313	0.0024745	403.5861980627301	62.538	1.4885	59.504	59.214	60.703	-3.0339					41	29	3	0	0	0	0.79792	1	2263	2263		19.263	1.4295	1	42810	+		20850	29996	17012	17035	23214	23214					0.13732314367666731
ISRIYKEL	8	Unmodified	_ISRIYKEL_					0	0	0		L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|57|1|sense;L1PA7_dup282|chr1:88818677-88820142:+|1.0289078366989055|0.4624574098713206|1.15|428.0|40|3|sense;L1PA7_dup9238|chr10:48372221-48377370:+|1.4943041569802586|0.2795461482764699|2.42|429.0|40|1|sense;L1PA5_dup4809|chr6:151863684-151865093:+|1.0617149984704268|0.1855937726213876|2.52|421.0|14|2|sense;L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|67|1|sense	L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|57|1|sense	L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|57|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.80999755859375	2	511.305667	1020.59678	2.4158	0.0012352	-0.85117	-0.00043521	1.5646	0.00079999	511.30494862735577	108.21	0.5547	108.21	107.99	108.54	0					29	12	3	0	0	0	0.028476	1	12254	12254		26.693	10.22	1	699580			20851	14683	17013	17036	23215	23215					0.08730619856999056
ISRKIKDP	8	Unmodified	_ISRKIKDP_					0	0	0		tr|A0A553SNX7|A0A553SNX7_NIACIRibosome-bindingfactorAOS=NialliacirculansOX=1397GN=rbfAPE=3SV=1	tr|A0A553SNX7|A0A553SNX7_NIACIRibosome-bindingfactorAOS=NialliacirculansOX=1397GN=rbfAPE=3SV=1	tr|A0A553SNX7|A0A553SNX7_NIACIRibosome-bindingfactorAOS=NialliacirculansOX=1397GN=rbfAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.7803955078125	2	478.798009	955.581465	-0.46472	-0.00022251	-2.2152	-0.0010606	-2.6799	-0.0012831	478.7968604135406	55.768	0.76006	52.473	52.21	52.97	-3.2944					20	14	2	0	0	0	0.028476	1	3507	3507		45.952	0	1	25313			20852	33976	17014	17037	23216	23216					0.10189753059796658
ISRLAPLLL	9	Unmodified	_ISRLAPLLL_					0	0	0			REV__ENSG00000112333|ENST00000368986|NR2E1	REV__ENSG00000112333|ENST00000368986|NR2E1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3337097167969	2	498.334227	994.653902	0.034655	1.727E-05	-0.51496	-0.00025662	-0.48031	-0.00023935	498.3339335091273	123.54	3.2541	123.31	122.99	126.25	-0.23193					175	65	5	0	0	0	0.31747	1	12004	12004		60.972	9.6365	1	3004600	+		20853	18094	17015	17038	23217	23217					0.15636087133384535
ISRLAPLLL	9	Unmodified	_ISRLAPLLL_					0	0	0			REV__ENSG00000112333|ENST00000368986|NR2E1	REV__ENSG00000112333|ENST00000368986|NR2E1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.333740234375	2	498.334227	994.653902	1.2643	0.00063007	-1.8659	-0.00092985	-0.60157	-0.00029978	498.3332884380841	124.71	3.4398	123.66	123.27	126.71	-1.0519					179	65	5	0	0	0	0.18193	2	9676	9676;9682		79.451	10.664	1	3929400	+		20854	18094	17015	17038	23218;23219	23218					0.15636087133384535
ISRLAPLLL	9	Unmodified	_ISRLAPLLL_					0	0	0			REV__ENSG00000112333|ENST00000368986|NR2E1	REV__ENSG00000112333|ENST00000368986|NR2E1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.33355712890625	2	498.334227	994.653902	3.0095	0.0014997	-3.4235	-0.001706	-0.41398	-0.0002063	498.33243610568087	134.14	2.7147	132.61	132.05	134.76	-1.5257					123	54	4	0	0	0	0.13482	1	13015	13015		87.754	10.908	1	1105000	+		20855	18094	17015	17038	23220	23220					0.15636087133384535
ISRNSWFKM	9	Unmodified	_ISRNSWFKM_					0	0	0		KLHL38|p.V525Gfs*5|1|0.14|ENSG00000175946|chr8:123645886-123645911|CGTGGTCAGCCGCCGCCCGCCCGTCA/-|frameshift_variant;ENSG00000175946|ENST00000684634|KLHL38	KLHL38|p.V525Gfs*5|1|0.14|ENSG00000175946|chr8:123645886-123645911|CGTGGTCAGCCGCCGCCCGCCCGTCA/-|frameshift_variant	KLHL38|p.V525Gfs*5|1|0.14|ENSG00000175946|chr8:123645886-123645911|CGTGGTCAGCCGCCGCCCGCCCGTCA/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	584.78125	2	584.800226	1167.5859	-1.9853	-0.001161	-3.5878	-0.0020982	-5.5731	-0.0032591	584.7980837097967	85.267	0.14816	83.776	83.653	83.801	-1.4906					4	2	2	0	0	0	0.027433	1	7363	7363		45.972	0	1	3668.9			20856	7573	17016	17039	23221	23221					0.008808942110590579
ISRPKSTPL	9	Unmodified	_ISRPKSTPL_					0	0	0		nc|ENSG00000154380|Q8N8S7-3|ENAH;ENSG00000154380|ENST00000366843|ENAH	nc|ENSG00000154380|Q8N8S7-3|ENAH	nc|ENSG00000154380|Q8N8S7-3|ENAH	MULTI-MSMS	OvCa9_classI_Rep2	2	499.80328369140625	2	499.803291	997.59203	-0.79283	-0.00039626	0.56419	0.00028199	-0.22863	-0.00011427	499.803503863494	58.325	1.5782	55.54	55.08	56.658	-2.7844					54	30	2	0	0	0	0.22621	1	4203	4203		71.877	7.6702	1	917370			20857	5733	17017	17040	23222	23222					0.09313735714226823
ISRPPVLPD	9	Unmodified	_ISRPPVLPD_					0	0	0			REV__LTR8_dup2971|chr17:8380695-8381392:+|1.1462445818792564|0.2447948664736123|2.23|429.0|15|2|sense	REV__LTR8_dup2971|chr17:8380695-8381392:+|1.1462445818792564|0.2447948664736123|2.23|429.0|15|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.2723083496094	2	497.290017	992.565481	0.93145	0.0004632	0.67485	0.00033559	1.6063	0.0007988	497.2901306602946	83.315	0.72089	83.315	83.12	83.841	0					37	16	3	0	0	0	0.027448	1	8646	8646		35.618	5.1146	1	1238900	+		20858	28631	17018	17041	23223	23223					0.06890046822900331
ISRPPVLPD	9	Unmodified	_ISRPPVLPD_					0	0	0			REV__LTR8_dup2971|chr17:8380695-8381392:+|1.1462445818792564|0.2447948664736123|2.23|429.0|15|2|sense	REV__LTR8_dup2971|chr17:8380695-8381392:+|1.1462445818792564|0.2447948664736123|2.23|429.0|15|2|sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	497.290017	992.565481	-1.6039	-0.00079759	1.1219	0.00055791	-0.48197	-0.00023968	497.2903275937205	84.857	1.5387	83.311	82.899	84.437	-1.5462	-0.066227	0.0010068	NaN	49.442	70	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218130	+		20859	28631	17018	17041							0.06890046822900331
ISRPPVLPD	9	Unmodified	_ISRPPVLPD_					0	0	0			REV__LTR8_dup2971|chr17:8380695-8381392:+|1.1462445818792564|0.2447948664736123|2.23|429.0|15|2|sense	REV__LTR8_dup2971|chr17:8380695-8381392:+|1.1462445818792564|0.2447948664736123|2.23|429.0|15|2|sense	MULTI-MATCH	OvCa9_classI_Rep3	3		2	497.290017	992.565481	-1.2636	-0.00062835	0.68711	0.00034169	-0.57645	-0.00028666	497.2901620156974	85.681	1.7548	83.461	82.986	84.74	-2.2204	0.083709	0.00057437	NaN	49.442	77	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	402720	+		20860	28631	17018	17041							0.06890046822900331
ISRPTKLK	8	Unmodified	_ISRPTKLK_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.8088073730469	2	471.808377	941.6022	1.2922	0.00060967	-1.3476	-0.00063582	-0.055421	-2.6148E-05	471.8075966836258	38.008	0.99157	35.115	34.891	35.883	-2.8925					40	19	3	0	0	0	0.73938	1	1445	1445		31.955	0.42505	1	282140			20861	2822	17019	17042	23224	23224					0.12906343439465218
ISRPTKLK	8	Unmodified	_ISRPTKLK_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	471.808377	941.6022	-1.8167	-0.00085711	1.6533	0.00078005	-0.16334	-7.7066E-05	471.80902985783547	38.005	0.83968	35.295	35.075	35.915	-2.7097	0.090027	0.0013752	NaN	31.955	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85630			20862	2822	17019	17042							0.12906343439465218
ISRQTSLLD	9	Unmodified	_ISRQTSLLD_					0	0	0			REV__OR10H1|p.K172Lfs*69|1|0.05|ENSG00000186723|chr19:15807524-15807525|-/CCTCCTGCCTTGGCATCCCAAG|frameshift_variant;REV__ENSG00000171942|ENST00000305899|OR10H2	REV__ENSG00000171942|ENST00000305899|OR10H2	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.8278198242188	2	516.787838	1031.56112	0.7471	0.00038609	2.1517	0.001112	2.8988	0.0014981	516.789637037245	90.882	0.278	90.882	90.738	91.016	0					12	6	3	0	0	0	0.027455	1	9757	9757		60.972	41.868	1	522530	+		20863	29265;21661	17020	17043	23225	23225					0.046605376093339146
ISRRIVVG	8	Unmodified	_ISRRIVVG_					0	0	0		ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.929931640625	2	450.292894	898.571235	-0.058443	-2.6317E-05	-0.32127	-0.00014467	-0.37971	-0.00017098	450.2926237451647	65.584	1.018	62.099	61.84	62.858	-3.4854					37	20	3	0	0	0	0.028476	1	4736	4736		60.294	4.7898	1	132690			20864	9183	17021	17044	23226	23226					0.11789190125239202
ISRRIVVG	8	Unmodified	_ISRRIVVG_					0	0	0		ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	450.292894	898.571235	2.6826	0.0012079	-2.6226	-0.0011809	0.060026	2.7029E-05	450.2915448921675	64.703	1.0372	61.979	61.705	62.742	-2.7245	-0.059907	-0.00067202	NaN	50.025	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107000			20865	9183	17021	17044							0.11789190125239202
ISRSVPLSL	9	Unmodified	_ISRSVPLSL_					0	0	0			REV__ENST00000479355.1_1_3:52529402-52535457:+|nuORF	REV__ENST00000479355.1_1_3:52529402-52535457:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	486.299072265625	2	486.297842	970.581131	1.726	0.00083934	0.31788	0.00015458	2.0439	0.00099392	486.2978112450845	110.94	0.9815	110.94	110.67	111.65	0					43	21	3	0	0	0	0.1804	1	12619	12619		79.713	2.866	1	982440	+		20866	26434	17022	17045	23227	23227					0.09466333339958055
ISSCVLEEPLL	11	Unmodified	_ISSCVLEEPLL_					0	0	0		L1PA2_dup23|chr1:43114528-43120516:-|1.3533449411662286|0.3152228216366226|2.1|404.0|291|2|anti-sense	L1PA2_dup23|chr1:43114528-43120516:-|1.3533449411662286|0.3152228216366226|2.1|404.0|291|2|anti-sense	L1PA2_dup23|chr1:43114528-43120516:-|1.3533449411662286|0.3152228216366226|2.1|404.0|291|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.8827819824219	3	401.549418	1201.62643	1.4521	0.00058309	-2.5794	-0.0010358	-1.1273	-0.00045267	401.54824890083074	46.614	1.9639	46.614	46.284	48.248	0					109	44	6	0	0	0	0.025551	1	3353	3353		30.569	0	1	9806900			20867	14672	17023	17046	23228	23228					0.03367771020180044
ISSHIPLII	9	Unmodified	_ISSHIPLII_					0	0	0		ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	OvCa99_classI_Rep5	1	496.8125915527344	2	496.810585	991.606617	2.0551	0.001021	0.51921	0.00025795	2.5743	0.0012789	496.81069329045533	116.42	0.72343	116.42	116.05	116.77	0					39	15	4	0	0	0	0.44294	1	13319	13319		47.916	0	1	573290			20868	5904	17024	17047	23229	23229					0.11047807862382797
ISSIHIAEV	9	Unmodified	_ISSIHIAEV_					0	0	0		tr|A0A553SRS3|A0A553SRS3_NIACINa+/H+antiportersubunitAOS=NialliacirculansOX=1397GN=CEQ21_01800PE=3SV=1	tr|A0A553SRS3|A0A553SRS3_NIACINa+/H+antiportersubunitAOS=NialliacirculansOX=1397GN=CEQ21_01800PE=3SV=1	tr|A0A553SRS3|A0A553SRS3_NIACINa+/H+antiportersubunitAOS=NialliacirculansOX=1397GN=CEQ21_01800PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.7752380371094	2	484.7742	967.533846	-0.90859	-0.00044046	0.24853	0.00012048	-0.66007	-0.00031998	484.77432100940536	92.678	2.6189	90.17	89.602	92.221	-2.5072					128	53	4	0	0	0	0.071436	1	8046	8046		106.42	0	1	5506400			20869	34289	17025	17048	23230	23230					0.04878054068956317
ISSKLKEH	8	Unmodified	_ISSKLKEH_					0	0	0		ENST00000609841.1_1_10:42832908-42833019:-|nuORF	ENST00000609841.1_1_10:42832908-42833019:-|nuORF	ENST00000609841.1_1_10:42832908-42833019:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.3102111816406	2	471.274367	940.53418	0.62081	0.00029257	3.6498	0.0017201	4.2707	0.0020127	471.2760786707351	22.527	0.43988	21.133	20.923	21.363	-1.3935					11	8	2	0	0	0	0.028476	1	282	282		77.318	17.199	1	6342.8			20870	14307	17026	17049	23231	23231					0.061534737887996016
ISSLISAVW	9	Unmodified	_ISSLISAVW_					0	0	0			REV__XCR1|p.H300Rfs*28|1|0.14|ENSG00000173578|chr3:46021048-46021049|AT/-|frameshift_variant	REV__XCR1|p.H300Rfs*28|1|0.14|ENSG00000173578|chr3:46021048-46021049|AT/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.2788391113281	2	488.279118	974.543683	-0.14274	-6.9698E-05	0.11966	5.8427E-05	-0.023083	-1.1271E-05	488.2790371348919	104.84	1.4704	102.72	102.32	103.79	-2.1192					62	28	3	0	0	0	0.16524	1	9507	9507		82.305	8.05	1	366640	+		20871	21786	17027	17050	23232	23232					0.05539242074326012
ISSLKAEL	8	Unmodified	_ISSLKAEL_					0	0	0		nc|ENSG00000029725|Q15276-2|RABEP1;ENSG00000029725|ENST00000537505|RABEP1;ENST00000575475.2_1_17:5185712-5281605:+|nuORF;EPS15|p.E466Rfs*25|1|0.05|ENSG00000085832|chr1:51408212-51408213|-/T|frameshift_variant;nc|ENSG00000085832|P42566-2|EPS15;ENSG00000085832|ENST00000371733|EPS15	nc|ENSG00000029725|Q15276-2|RABEP1;nc|ENSG00000085832|P42566-2|EPS15	nc|ENSG00000029725|Q15276-2|RABEP1	MULTI-MSMS	OvCa9_classI_Rep2	2	430.7580871582031	2	430.758018	859.501483	-0.070518	-3.0376E-05	-0.0041195	-1.7745E-06	-0.074638	-3.2151E-05	430.7579527292077	70.798	3.4249	68.227	67.563	70.988	-2.5707					181	65	5	0	0	0	0.34187	3	5680	5645;5663;5680		99.375	5.4493	1	1316200			20872	1063;1741	17028	17051	23233;23234;23235	23235					0.06611266665947824
ISSLKAEL	8	Unmodified	_ISSLKAEL_					0	0	0		nc|ENSG00000029725|Q15276-2|RABEP1;ENSG00000029725|ENST00000537505|RABEP1;ENST00000575475.2_1_17:5185712-5281605:+|nuORF;EPS15|p.E466Rfs*25|1|0.05|ENSG00000085832|chr1:51408212-51408213|-/T|frameshift_variant;nc|ENSG00000085832|P42566-2|EPS15;ENSG00000085832|ENST00000371733|EPS15	nc|ENSG00000029725|Q15276-2|RABEP1;nc|ENSG00000085832|P42566-2|EPS15	nc|ENSG00000029725|Q15276-2|RABEP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	430.7588195800781	2	430.758018	859.501483	-0.18881	-8.133E-05	-0.13604	-5.8602E-05	-0.32485	-0.00013993	430.75794506933937	71.75	3.1403	68.293	67.874	71.015	-3.4563					177	64	5	0	0	0	0.27528	2	5479	5479;5504		111.65	5.4493	1	4667500			20873	1063;1741	17028	17051	23236;23237	23236					0.06611266665947824
ISSLKDCLHG	10	Unmodified	_ISSLKDCLHG_					0	0	0		ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7;ENST00000537641.5_1_11:61178417-61183276:-|nuORF	ENSG00000149532|ENST00000439958|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.8174438476562	2	536.776416	1071.53828	-1.2342	-0.00066249	-2.1034	-0.0011291	-3.3376	-0.0017916	536.7752911663159	67.176	1.2839	64.515	64.199	65.483	-2.661					48	25	3	0	0	0	0.026714	1	5218	5218		28.081	13.217	1	175870			20874	5467	17029	17052	23238	23238					0.005371952201812746
ISSLVISKGH	10	Unmodified	_ISSLVISKGH_					0	0	0			REV__tr|A0A553SN59|A0A553SN59_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23830PE=4SV=1	REV__tr|A0A553SN59|A0A553SN59_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23830PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.291015625	2	520.808574	1039.60259	-0.62278	-0.00032435	0.62804	0.00032709	0.0052647	2.7419E-06	520.808759284751	103.09	2.0426	100.89	99.676	101.72	-2.1994					32	15	3	0	0	0	0.026665	1	9323	9323		34.173	0	1	120820	+		20875	30394	17030	17053	23239	23239					0.08437718368668357
ISSQKELHG	9	Unmodified	_ISSQKELHG_					0	0	0		GOT1L1|p.V365Sfs*26|1|0.28|ENSG00000169154|chr8:37934467-37934468|-/GGCATCTGAAGTGGGGTGCAGTCTTGCAGAACTG|frameshift_variant;ENSG00000169154|ENST00000307599|GOT1L1	GOT1L1|p.V365Sfs*26|1|0.28|ENSG00000169154|chr8:37934467-37934468|-/GGCATCTGAAGTGGGGTGCAGTCTTGCAGAACTG|frameshift_variant	GOT1L1|p.V365Sfs*26|1|0.28|ENSG00000169154|chr8:37934467-37934468|-/GGCATCTGAAGTGGGGTGCAGTCTTGCAGAACTG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.8130187988281	2	499.766906	997.519259	-0.38307	-0.00019145	-1.6751	-0.00083717	-2.0582	-0.0010286	500.2685798832596	106.87	0.14867	106.56	106.47	106.62	-0.30836					4	2	2	0	0	0	0.027462	1	9970	9970		21.96	0	1	10261			20876	6980	17031	17054	23240	23240					0.02039981920813716
ISSRLPFVT	9	Unmodified	_ISSRLPFVT_					0	0	0		ENST00000481849.5_1_6:31321970-31322072:-|nuORF	ENST00000481849.5_1_6:31321970-31322072:-|nuORF	ENST00000481849.5_1_6:31321970-31322072:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	510.2987060546875	2	510.297842	1018.58113	-0.27425	-0.00013995	0.29321	0.00014962	0.018957	9.6737E-06	510.2979554881241	98.83	0.87657	97.145	96.697	97.574	-1.685					40	16	3	0	0	0	0.18193	1	6626	6626		79.451	2.6769	1	261780			20877	12555	17032	17055	23241	23241					0.07258333339939327
ISSRLPFVT	9	Unmodified	_ISSRLPFVT_					0	0	0		ENST00000481849.5_1_6:31321970-31322072:-|nuORF	ENST00000481849.5_1_6:31321970-31322072:-|nuORF	ENST00000481849.5_1_6:31321970-31322072:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	510.297842	1018.58113	-0.23967	-0.0001223	0.20842	0.00010636	-0.031248	-1.5946E-05	510.2978544920779	97.792	0.78199	96.833	96.562	97.344	-0.95857	-0.15662	3.6734E-05	NaN	79.451	40	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216660			20878	12555	17032	17055							0.07258333339939327
ISSRLPFVT	9	Unmodified	_ISSRLPFVT_					0	0	0		ENST00000481849.5_1_6:31321970-31322072:-|nuORF	ENST00000481849.5_1_6:31321970-31322072:-|nuORF	ENST00000481849.5_1_6:31321970-31322072:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	510.297842	1018.58113	-0.79253	-0.00040442	0.9377	0.0004785	0.14517	7.4079E-05	510.29822279583277	99.406	0.92838	97.081	96.639	97.568	-2.3253	0.090925	0.00078103	NaN	79.451	40	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220600			20879	12555	17032	17055							0.07258333339939327
ISSSALSLHD	10	Unmodified	_ISSSALSLHD_					0	0	0		nc|ENSG808|P60509|ERVPABLB-1	nc|ENSG808|P60509|ERVPABLB-1	nc|ENSG808|P60509|ERVPABLB-1	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.2905883789062	2	515.264196	1028.51384	-0.3456	-0.00017808	0.55434	0.00028563	0.20874	0.00010756	515.2645285311487	101.64	0.34325	101.64	101.57	101.91	0					10	7	2	0	0	0	0.026752	1	11304	11304		44.117	16.235	1	774560			20880	15409	17033	17056	23242	23242					0.0007225833833217621
ISSSLQKF	8	Unmodified	_ISSSLQKF_					0	0	0		ENST00000594250.5_2_19:35823818-35827004:+|nuORF	ENST00000594250.5_2_19:35823818-35827004:+|nuORF	ENST00000594250.5_2_19:35823818-35827004:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	455.210693359375	2	455.255643	908.496732	-0.0087546	-3.9856E-06	1.1562	0.00052637	1.1474	0.00052238	455.25597234275705	71.28	0.84661	71.28	71.031	71.877	0					43	20	4	0	0	0	0.028476	1	6965	6965		33.516	9.3128	1	1415900			20881	14161	17034	17057	23243	23243					0.038823825231816045
ISSSVVTYPG	10	Unmodified	_ISSSVVTYPG_					0	0	0			REV__ENST00000424586.7_1_19:36399116-36399191:-|nuORF	REV__ENST00000424586.7_1_19:36399116-36399191:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	505.2641296386719	2	505.263665	1008.51278	0.8595	0.00043427	0.38213	0.00019308	1.2416	0.00062735	505.26375901484937	29.367	1.0512	26.658	26.456	27.508	-2.7097					36	21	2	0	0	0	0.56767	1	701	701		45.952	1.4209	1	167190	+		20882	25647	17035	17058	23244	23244					0.008860439694331035
ISSVMEQL	8	Unmodified	_ISSVMEQL_					0	0	0			REV__ENSG00000175073|ENST00000310421|VCPIP1	REV__ENSG00000175073|ENST00000310421|VCPIP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	453.2572021484375	2	453.733686	905.452819	-1.5396	-0.00069859	0.89126	0.00040439	-0.64838	-0.00029419	453.7340081956759	49.876	0.51819	46.735	46.301	46.82	-3.1416					11	9	2	0	0	0	0.028476	1	2845	2845		24.203	0	1	12052	+		20883	21867	17036	17059	23245	23245					-0.003689699654614742
ISSVYKIIN	9	Unmodified	_ISSVYKIIN_					0	0	0			REV__tr|A0A7D6VR06|A0A7D6VR06_9CLOTAcetolactatesynthaseOS=ClostridiumintestinaleOX=36845GN=ilvBPE=3SV=1	REV__tr|A0A7D6VR06|A0A7D6VR06_9CLOTAcetolactatesynthaseOS=ClostridiumintestinaleOX=36845GN=ilvBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.781494140625	2	518.8055	1035.59645	1.1892	0.00061699	-1.4428	-0.00074855	-0.25359	-0.00013156	518.803945108874	81.757	0.5281	81.757	81.613	82.141	0					17	12	2	0	0	0	0.027425	1	8472	8472		35.152	3.6222	1	221270	+		20884	31376	17037	17060	23246	23246					0.08007200137149084
ISSYVSEET	9	Unmodified	_ISSYVSEET_					0	0	0		tr|A0A7D6VW02|A0A7D6VW02_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07250PE=4SV=1	tr|A0A7D6VW02|A0A7D6VW02_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07250PE=4SV=1	tr|A0A7D6VW02|A0A7D6VW02_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07250PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.76300048828125	2	507.734937	1013.45532	0.48913	0.00024835	2.4814	0.0012599	2.9705	0.0015082	507.73577752166	126.45	0.34207	126.22	125.95	126.29	-0.2359					8	6	2	0	0	0	0.027279	1	12335	12335		42.396	0	1	7457.6			20885	35241	17038	17061	23247	23247					-0.05086843026811039
ISTFPRKY	8	Unmodified	_ISTFPRKY_					0	0	0			REV__ENSG00000113319|ENST00000265080|RASGRF2	REV__ENSG00000113319|ENST00000265080|RASGRF2	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.84161376953125	2	506.284734	1010.55492	0.11486	5.8151E-05	0.79641	0.00040321	0.91127	0.00046136	506.28449682149534	110.73	0.77309	109.59	109.19	109.96	-1.1424					22	14	2	0	0	0	0.028476	1	8011	8011		37.159	1.5408	1	15494	+		20886	18145	17039	17062	23248	23248					0.05006064168469493
ISTFRCTNTI	10	Unmodified	_ISTFRCTNTI_					0	0	0		ENST00000432358.1_1_6:158703306-158703348:+|nuORF	ENST00000432358.1_1_6:158703306-158703348:+|nuORF	ENST00000432358.1_1_6:158703306-158703348:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	578.2906494140625	2	578.294973	1154.57539	-5.4887	-0.0031741	-3.6529	-0.0021124	-9.1416	-0.0052866	578.2927598597663	159.22	4.1126	158.99	158.53	162.64	-0.22697					262	82	5	0	0	0	0.42082	4	16310	16219;16270;16310;16317		65.465	12.114	1	1073400			20887	11809	17040	17063	23249;23250;23251;23252	23251					0.004288667659693601
ISTFRCTNTI	10	Unmodified	_ISTFRCTNTI_					0	0	0		ENST00000432358.1_1_6:158703306-158703348:+|nuORF	ENST00000432358.1_1_6:158703306-158703348:+|nuORF	ENST00000432358.1_1_6:158703306-158703348:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	578.28955078125	2	578.294973	1154.57539	-7.6021	-0.0043963	-1.6299	-0.00094256	-9.232	-0.0053388	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.22511	3	13845	13845;13863;13869		90.601	11.15	1	1429200			20888	11809	17040	17063	23253;23254;23255	23253					0.004288667659693601
ISTFRCTNTI	10	Unmodified	_ISTFRCTNTI_					0	0	0		ENST00000432358.1_1_6:158703306-158703348:+|nuORF	ENST00000432358.1_1_6:158703306-158703348:+|nuORF	ENST00000432358.1_1_6:158703306-158703348:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.2909545898438	2	578.294973	1154.57539	-7.0214	-0.0040605	-2.2037	-0.0012744	-9.2252	-0.0053349	578.2935937226971	160.38	4.1596	158.77	158.05	162.21	-1.6101					391	105	5	0	0	0	0.59317	1	15796	15796		42.864	8.6917	1	1912500			20889	11809	17040	17063	23256	23256					0.004288667659693601
ISTHPLLVKVI	11	Unmodified	_ISTHPLLVKVI_					0	0	0		tr|A0A7D6ZHE7|A0A7D6ZHE7_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02660PE=3SV=1	tr|A0A7D6ZHE7|A0A7D6ZHE7_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02660PE=3SV=1	tr|A0A7D6ZHE7|A0A7D6ZHE7_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02660PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	407.2633056640625	3	407.263941	1218.76999	1.8047	0.00073498	-3.7978	-0.0015467	-1.9931	-0.00081172	407.26226398347274	67.562	1.5001	64.675	64.341	65.841	-2.8873					59	29	3	0	0	0	0.71582	1	2869	2869		24.232	3.3947	1	125720			20890	35574	17041	17064	23257	23257					0.16935985913414697
ISTIITDLSL	10	Unmodified	_ISTIITDLSL_					0	0	0			REV__tr|A0A553SKX1|A0A553SKX1_NIACIMembraneproteinYqhROS=NialliacirculansOX=1397GN=CEQ21_19420PE=4SV=1	REV__tr|A0A553SKX1|A0A553SKX1_NIACIMembraneproteinYqhROS=NialliacirculansOX=1397GN=CEQ21_19420PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.3170776367188	2	538.315897	1074.61724	-2.0792	-0.0011192	1.7617	0.00094838	-0.31742	-0.00017087	538.3165339155396	72.747	1.4061	69.35	68.911	70.317	-3.3961					77	26	4	0	0	0	0.42962	1	5627	5627		64.207	9.4426	1	1125000	+		20891	30159	17042	17065	23258	23258					0.08291745726137378
ISTILFGA	8	Unmodified	_ISTILFGA_					0	0	0		SERPINB1-RNPEP|1|fusion;ENST00000471105.5_1_1:201965436-201974841:+|nuORF;LGR6-RNPEP|1|fusion;ENSG00000176393|ENST00000295640|RNPEP	SERPINB1-RNPEP|1|fusion	SERPINB1-RNPEP|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	411.2430725097656	2	411.242004	820.469455	3.0869	0.0012695	0.69935	0.0002876	3.7862	0.0015571	411.24220022278166	78.234	1.112	78.234	77.884	78.996	0					57	26	4	0	0	0	0.59103	1	7915	7915		65.897	0	1	5966600			20892	32812	17043	17066	23259	23259					0.05203898982813371
ISTKPSLSLT	10	Unmodified	_ISTKPSLSLT_					0	0	0		ENSG00000188585|ENST00000623247|CLEC20A	ENSG00000188585|ENST00000623247|CLEC20A	ENSG00000188585|ENST00000623247|CLEC20A	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.823486328125	2	523.808239	1045.60193	0.52175	0.0002733	-0.75973	-0.00039795	-0.23798	-0.00012466	523.8079542972922	80.841	1.3948	79.146	78.173	79.568	-1.6951					68	27	3	0	0	0	0.026464	1	6815	6815		60.118	0	1	137100			20893	8481	17044	17067	23260	23260					0.0809487892895504
ISTNNKVSK	9	Unmodified	_ISTNNKVSK_					0	0	0		ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.7856140136719	2	495.782556	989.550559	-0.29021	-0.00014388	4.3714	0.0021672	4.0812	0.0020234	495.7845150209093	83.045	0.78036	80.362	80.028	80.808	-2.6829					38	15	3	0	0	0	0.37182	1	6893	6893		54.722	3.3869	1	372460			20894	1176	17045	17068	23261	23261					0.055365549549037496
ISTNNKVSK	9	Unmodified	_ISTNNKVSK_					0	0	0		ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	495.782556	989.550559	-1.1076	-0.00054915	2.6998	0.0013385	1.5922	0.00078937	495.7836187769455	82.616	1.137	80.319	80.039	81.176	-2.2963	-0.021229	-0.0015149	NaN	54.722	52	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	465840			20895	1176	17045	17068							0.055365549549037496
ISTNTIGNFF	10	Unmodified	_ISTNTIGNFF_					0	0	0			REV__ENSG00000214929|ENST00000344803|SPATA31D1	REV__ENSG00000214929|ENST00000344803|SPATA31D1	MULTI-MSMS	OvCa99_classI_Rep5	1	557.2817993164062	2	557.282389	1112.55022	-0.10083	-5.619E-05	-2.4545	-0.0013678	-2.5553	-0.001424	557.280996580564	29.479	0.39841	29.479	29.337	29.735	0					13	7	3	0	0	0	0.70152	1	1057	1057		30.318	1.1477	1	113640	+		20896	23302	17046	17069	23262	23262					-0.001548647649542545
ISTVILYIWEL	11	Unmodified	_ISTVILYIWEL_					0	0	0			REV__tr|A0A7D6VV32|A0A7D6VV32_9CLOTGlycosyltransferasefamily39proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22805PE=4SV=1	REV__tr|A0A7D6VV32|A0A7D6VV32_9CLOTGlycosyltransferasefamily39proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22805PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	450.5973815917969	3	450.595356	1348.76424	2.0912	0.00094228	3.747	0.0016884	5.8382	0.0026307	450.59700338359727	73.597	2.3004	71.197	70.687	72.988	-2.3999					152	43	5	0	0	0	0.54114	1	6004	6004		50.034	7.6954	1	946140	+		20897	31705	17047	17070	23263	23263					0.10380842611084518
ISTVTRPVPLE	11	Unmodified	_ISTVTRPVPLE_					0	0	0		ENSG00000204351|ENST00000375394|SKIC2;SKIV2L|p.K777Lfs*25|1|0.48|ENSG00000204351|chr6:31966833-31966834|-/ACTTCTGGGCTCAAGCAGTCTGTCTGCCTCAGCTT|frameshift_variant	ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	MULTI-MSMS	OvCa9_classI_Rep2	2	404.5705871582031	3	404.571322	1210.69214	0.36741	0.00014864	-2.4416	-0.00098779	-2.0742	-0.00083915	404.5702198985251	49.813	1.7345	47.045	46.614	48.348	-2.768					90	34	4	0	0	0	0.72069	1	3180	3180		22.562	0.87584	1	257950			20898	8972	17048	17071	23264	23264					0.09521928257390755
ISVASWRAR	9	Unmodified	_ISVASWRAR_					0	0	0			REV__tr|A0A7D6ZX44|A0A7D6ZX44_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21620PE=4SV=1	REV__tr|A0A7D6ZX44|A0A7D6ZX44_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21620PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.281494140625	2	523.298707	1044.58286	-0.28217	-0.00014766	0.19433	0.00010169	-0.087833	-4.5963E-05	523.2978467591004	73.683	0.2684	73.683	73.56	73.829	0					9	6	2	0	0	0	0.027462	1	7252	7252		21.96	0	1	383430	+		20899	32314	17049	17072	23265	23265					0.06235387148535665
ISVDAKTII	9	Unmodified	_ISVDAKTII_					0	0	0		tr|A0A7D6ZZD2|A0A7D6ZZD2_9CLOTDUF3794domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19630PE=4SV=1	tr|A0A7D6ZZD2|A0A7D6ZZD2_9CLOTDUF3794domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19630PE=4SV=1	tr|A0A7D6ZZD2|A0A7D6ZZD2_9CLOTDUF3794domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19630PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.806640625	2	480.292225	958.569897	-0.090375	-4.3407E-05	-0.14124	-6.7835E-05	-0.23161	-0.00011124	480.2920687670952	56.34	0.55364	53.045	52.668	53.221	-3.2944					17	10	2	0	0	0	0.027425	1	3604	3604		69.628	3.1983	1	100400			20900	35956	17050	17073	23266	23266					0.08895511245816579
ISVDGVVYY	9	Unmodified	_ISVDGVVYY_					0	0	0		ENSG00000148175|ENST00000286713|STOM	ENSG00000148175|ENST00000286713|STOM	ENSG00000148175|ENST00000286713|STOM	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7633361816406	2	507.760758	1013.50696	-0.36461	-0.00018514	4.3644	0.0022161	3.9998	0.0020309	507.76291546317833	116.38	1.6525	115.02	114.75	116.4	-1.3645					79	31	4	0	0	0	0.44294	1	10863	10863		47.916	3.7988	1	272140			20901	5389	17051	17074	23267	23267					0.0007494545774306971
ISVGVEKKV	9	Unmodified	_ISVGVEKKV_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa99_classI_Rep5	1	479.80010986328125	2	479.800217	957.585882	-0.52766	-0.00025317	-0.49274	-0.00023642	-1.0204	-0.00048959	479.8000047500225	39.553	4.148	39.553	39.287	43.435	0					132	94	2	0	0	0	0.026923	1	2320	2320		138.83	5.0129	1	33169000	+		20902	28942;32737;28943	17052	17075	23268	23268					0.1053921748269886
ISVHGGIQNFT	11	Unmodified	_ISVHGGIQNFT_					0	0	0		nc|ENSG00000119121|Q9BX84-6|TRPM6;nc|ENSG00000119121|Q9BX84-5|TRPM6;nc|ENSG00000119121|Q9BX84-4|TRPM6;nc|ENSG00000119121|Q9BX84-3|TRPM6;nc|ENSG00000119121|Q9BX84-2|TRPM6;ENSG00000119121|ENST00000360774|TRPM6;nc|ENSG00000119121|Q9BX84-7|TRPM6;TRPM6|p.F950Pfs*23|1|0.1|ENSG00000119121|chr9:74785945-74785946|-/GACAGACTGGAGCAAGGTGGCCCAATTTTGAATCCTGG|frameshift_variant	nc|ENSG00000119121|Q9BX84-6|TRPM6	nc|ENSG00000119121|Q9BX84-6|TRPM6	MULTI-MSMS	OvCa9_classI_Rep3	3	586.8033447265625	2	586.806562	1171.59857	-8.2814	-0.0048596	2.4781	0.0014542	-5.8033	-0.0034054	586.8077830487384	159.82	3.6388	158.49	157.91	161.55	-1.3316					146	73	3	0	0	0	0.71789	1	13848	13848		23.523	0.48021	1	151840			20903	3341	17053	17076	23269	23269					0.019636288749325104
ISVKLSLPE	9	Unmodified	_ISVKLSLPE_					0	0	0		tr|A0A7D6ZG62|A0A7D6ZG62_9CLOTYbbR-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20995PE=4SV=1	tr|A0A7D6ZG62|A0A7D6ZG62_9CLOTYbbR-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20995PE=4SV=1	tr|A0A7D6ZG62|A0A7D6ZG62_9CLOTYbbR-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20995PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	493.299560546875	2	493.30005	984.585547	1.5276	0.00075355	-2.1016	-0.0010367	-0.57398	-0.00028315	493.2989778835464	91.393	1.4759	90.158	89.954	91.43	-1.2355					53	27	2	0	0	0	0.28934	1	8119	8119		64.207	4.089	1	769980			20904	35536	17054	17077	23270	23270					0.09263797762866943
ISVKLVFF	8	Unmodified	_ISVKLVFF_					0	0	0			REV__Harlequin-int_dup161|chr4:91353598-91357139:-|1.3911466287095282|0.2716421829311496|2.36|422.0|26|1|sense	REV__Harlequin-int_dup161|chr4:91353598-91357139:-|1.3911466287095282|0.2716421829311496|2.36|422.0|26|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.2659606933594	2	476.796946	951.57934	1.2469	0.0005945	0.99245	0.0004732	2.2393	0.0010677	476.79731534376083	123.63	0.36594	123.63	123.37	123.74	0					10	7	2	0	0	0	0.028476	1	14260	14260		37.159	3.6435	1	42185	+		20905	28174	17055	17078	23271	23271					0.10161324321995835
ISVKPANRIL	10	Unmodified	_ISVKPANRIL_					0	0	0		ENSG00000172209|ENST00000304402|GPR22	ENSG00000172209|ENST00000304402|GPR22	ENSG00000172209|ENST00000304402|GPR22	MULTI-SECPEP	OvCa9_classI_Rep3	3	556.3318481445312	2	555.853316	1109.69208	0.18002	0.00010007	-2.407	-0.001338	-2.227	-0.0012379	555.8509715081631	69.572	1.2439	66.758	66.112	67.356	-2.8144					37	24	3	0	0	0	0.026681	1	3111	3111		44.377	21.798	1	40281			20906	7275	17056	17079	23272	23272					0.14161973048021537
ISVKPANRIL	10	Unmodified	_ISVKPANRIL_					0	0	0		ENSG00000172209|ENST00000304402|GPR22	ENSG00000172209|ENST00000304402|GPR22	ENSG00000172209|ENST00000304402|GPR22	MULTI-MATCH	OvCa9_classI_Rep2	2		2	555.853316	1109.69208	0.13252	7.366E-05	-0.39707	-0.00022071	-0.26455	-0.00014705	555.8527360087045	69.406	0.50081	66.785	66.565	67.066	-2.6203	0.013705	0.00050601	NaN	44.377	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22972			20907	7275	17056	17079							0.14161973048021537
ISVKTTSRSK	10	Unmodified	_ISVKTTSRSK_					0	0	0		ENSG00000130254|ENST00000252542|SAFB2	ENSG00000130254|ENST00000252542|SAFB2	ENSG00000130254|ENST00000252542|SAFB2	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.82958984375	2	553.830037	1105.64552	1.4061	0.00077877	-1.3769	-0.00076255	0.029282	1.6217E-05	553.8291816775361	139.45	3.0735	137.95	136.76	139.84	-1.4952					150	61	3	0	0	0	0.70152	1	13464	13464		30.318	3.6248	1	110800			20908	3973	17057	17080	23273	23273					0.09692488426071577
ISVLQVRGF	9	Unmodified	_ISVLQVRGF_					0	0	0		ENST00000216160.10_1_22:39827477-39827837:+|nuORF	ENST00000216160.10_1_22:39827477-39827837:+|nuORF	ENST00000216160.10_1_22:39827477-39827837:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	509.80419921875	2	509.805834	1017.59712	-1.3099	-0.00066782	-2.9211	-0.0014892	-4.231	-0.002157	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.67509	1	11264	11264		23.042	1.3402	1	99460			20909	9665	17058	17081	23274	23274					0.08902039576844345
ISVLRSILD	9	Unmodified	_ISVLRSILD_					0	0	0		ENSG00000151151|ENST00000373935|IPMK	ENSG00000151151|ENST00000373935|IPMK	ENSG00000151151|ENST00000373935|IPMK	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.3096923828125	2	508.310949	1014.60735	1.1935	0.00060666	-1.1814	-0.00060052	0.012084	6.1426E-06	508.31022832895366	129.39	1.6322	127.93	127.6	129.23	-1.4565					60	32	3	0	0	0	0.55011	1	12408	12408		37.812	4.9991	1	70621			20910	5538	17059	17082	23275	23275					0.10062602511413843
ISVNALILLY	10	Unmodified	_ISVNALILLY_					0	0	0			REV__tr|A0A553SIG3|A0A553SIG3_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14705PE=4SV=1	REV__tr|A0A553SIG3|A0A553SIG3_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14705PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.8175048828125	2	559.844625	1117.6747	2.5358	0.0014197	-2.7998	-0.0015674	-0.26393	-0.00014776	559.8431944631791	133.93	0.33488	133.93	133.67	134.01	0					13	6	3	0	0	0	0.02663	1	15578	15578		42.864	5.0528	1	134480	+		20911	29890	17060	17083	23276	23276					0.12056632722374161
ISVNLMPELA	10	Unmodified	_ISVNLMPELA_					0	0	0		ENSG00000118276|ENST00000306851|B4GALT6;nc|ENSG00000118276|Q9UBX8-2|B4GALT6;ENST00000578114.1_1_18:29205579-29207019:-|nuORF	ENSG00000118276|ENST00000306851|B4GALT6	ENSG00000118276|ENST00000306851|B4GALT6	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8327026367188	2	543.796817	1085.57908	1.6453	0.00089471	-3.2144	-0.001748	-1.5691	-0.00085326	543.7948052676855	116.79	1.1002	116.79	116.55	117.65	0					32	23	2	0	0	0	0.026752	1	13353	13353		20.947	0	1	328110			20912	3298	17061	17084	23277	23277					0.03971536539847875
ISVNRGVDV	9	Unmodified	_ISVNRGVDV_					0	0	0			REV__sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1	REV__sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	479.77130126953125	2	479.769448	957.524344	-0.027451	-1.317E-05	4.3136	0.0020696	4.2862	0.0020564	479.7714361650209	72.282	1.7759	69.775	69.381	71.157	-2.5071					93	33	4	0	0	0	0.11471	1	5856	5856		93.195	10.89	1	1082900	+		20913	29391	17062	17085	23278	23278					0.04388285783431911
ISVNRLVY	8	Unmodified	_ISVNRLVY_					0	0	0			REV__L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|183|1|anti-sense	REV__L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|183|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	481.8065490722656	2	482.284734	962.554916	-0.84424	-0.00040716	0.68107	0.00032847	-0.16317	-7.8695E-05	482.2848418624381	87.378	1.0224	85.201	84.683	85.706	-2.1768					29	19	2	0	0	0	0.028476	1	5190	5190		50.025	7.6284	1	32288	+		20914	28347	17063	17086	23279	23279					0.07214064168454115
ISVNRLVY	8	Unmodified	_ISVNRLVY_					0	0	0			REV__L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|183|1|anti-sense	REV__L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|183|1|anti-sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	482.284734	962.554916	-0.089465	-4.3148E-05	-0.48332	-0.0002331	-0.57279	-0.00027625	482.2842726207172	86.58	0.83597	85.089	84.796	85.632	-1.4906	-0.11257	-0.00079557	NaN	50.025	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23337	+		20915	28347	17063	17086							0.07214064168454115
ISVNRLVY	8	Unmodified	_ISVNRLVY_					0	0	0			REV__L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|183|1|anti-sense	REV__L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|183|1|anti-sense	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	482.284734	962.554916	-2.3395	-0.0011283	0.68899	0.00033229	-1.6505	-0.00079602	482.28492473655365	87.917	0.80479	85.315	84.925	85.73	-2.6027	0.11322	0.00033521	NaN	50.025	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35941	+		20916	28347	17063	17086							0.07214064168454115
ISVPIGDPQ	9	Unmodified	_ISVPIGDPQ_					0	0	0		nc|ENSG00000166220|Q96M53-2|TBATA;nc|ENSG00000166220|Q96M53|TBATA;ENSG00000166220|ENST00000456372|TBATA	nc|ENSG00000166220|Q96M53-2|TBATA	nc|ENSG00000166220|Q96M53-2|TBATA	MULTI-SECPEP	OvCa99_classI_Rep5	1	463.7337951660156	2	463.2531	924.491647	-0.17897	-8.291E-05	0.16377	7.5868E-05	-0.015201	-7.0418E-06	463.25300736810107	56.36	0.77727	56.36	56.011	56.788	0					25	18	2	0	0	0	0.027447	1	4680	4680		31.53	0	1	1361900			20917	6652	17064	17087	23280	23280					0.02638078660561405
ISVPKSSGY	9	Unmodified	_ISVPKSSGY_					0	0	0		tr|A0A553SQK4|A0A553SQK4_NIACIThioesterdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07855PE=4SV=1	tr|A0A553SQK4|A0A553SQK4_NIACIThioesterdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07855PE=4SV=1	tr|A0A553SQK4|A0A553SQK4_NIACIThioesterdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07855PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	469.25421142578125	2	469.2531	936.491647	-0.79526	-0.00037318	0.65772	0.00030864	-0.13754	-6.4541E-05	469.25341955315633	86.432	2.2386	84.255	84.03	86.269	-2.1768					105	43	4	0	0	0	0.11471	1	5131	5131		93.195	2.5946	1	2599900			20918	34171	17065	17088	23281	23281					0.0208607866057946
ISVPLLIYHP	10	Unmodified	_ISVPLLIYHP_					0	0	0		nc|ENSG00000120519|Q0GE19-3|SLC10A7;ENSG00000120519|ENST00000335472|SLC10A7;nc|ENSG00000120519|Q0GE19-1|SLC10A7	nc|ENSG00000120519|Q0GE19-3|SLC10A7	nc|ENSG00000120519|Q0GE19-3|SLC10A7	MULTI-MSMS	OvCa9_classI_Rep4_	4	576.34423828125	2	576.344792	1150.67503	-0.79438	-0.00045784	-2.9259	-0.0016863	-3.7202	-0.0021441	576.3430198819267	94.583	1.0503	92.114	91.811	92.861	-2.4685					66	20	4	0	0	0	0.65434	1	8304	8304		35.618	1.4457	1	395710			20919	3433	17066	17089	23282	23282					0.10572052442216773
ISVRLSYPP	9	Unmodified	_ISVRLSYPP_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1;ABCA1-PRR5L|1|fusion;ABCA1-PRR5L|2|fusion;ABCA1-PRR5L|3|fusion	ENSG00000165029|ENST00000374736|ABCA1;ABCA1-PRR5L|2|fusion	ENSG00000165029|ENST00000374736|ABCA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.3176879882812	2	516.297842	1030.58113	2.9435	0.0015197	0.39123	0.00020199	3.3347	0.0017217	516.2979631216052	102.4	0.37875	102.4	102.21	102.59	0					19	8	3	0	0	0	0.027402	1	11422	11422		47.657	0	1	598100			20920	6511;2	17067	17090	23283	23283					0.06706333339957382
ISVVERTK	8	Unmodified	_ISVVERTK_					0	0	0			REV__tr|A0A7D6VQ57|A0A7D6VQ57_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01400PE=4SV=1	REV__tr|A0A7D6VQ57|A0A7D6VQ57_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01400PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.27667236328125	2	466.282192	930.549831	-0.58453	-0.00027256	-0.15787	-7.3613E-05	-0.7424	-0.00034617	466.28204699867223	73.929	1.6264	70.698	70.386	72.012	-3.2308					105	33	4	0	0	0	0.50674	1	5801	5801		76.847	0	1	1978700	+		20921	31299	17068	17091	23284	23284					0.08177760305841275
ISVVMLLEV	9	Unmodified	_ISVVMLLEV_					0	0	0			REV__nc|ENSG00000102893|Q93100-4|PHKB	REV__nc|ENSG00000102893|Q93100-4|PHKB	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.75994873046875	2	501.798829	1001.5831	0.51276	0.0002573	-1.8412	-0.00092391	-1.3284	-0.00066661	502.29930444534176	74.351	0.61961	74.351	74.056	74.676	0					21	15	2	0	0	0	0.027343	1	7314	7314		40.778	6.6056	1	306290	+		20922	17577	17069	17092	23285	23285					0.08237626033542256
ISVVTPGAPS	10	Unmodified	_ISVVTPGAPS_					0	0	0			REV__ENSG00000123454|ENST00000393056|DBH	REV__ENSG00000123454|ENST00000393056|DBH	MULTI-SECPEP	OvCa9_classI_Rep3	3	464.28314208984375	2	464.260925	926.507297	-0.95719	-0.00044439	1.4235	0.00066087	0.4663	0.00021649	464.2614594686083	96.241	1.1644	94.412	94.027	95.191	-1.8286					42	22	2	0	0	0	0.027422	1	6302	6302		62.107	0	1	222600	+		20923	18642	17070	17093	23286	23286					0.04110365177609765
ISVVTPGAPS	10	Unmodified	_ISVVTPGAPS_					0	0	0			REV__ENSG00000123454|ENST00000393056|DBH	REV__ENSG00000123454|ENST00000393056|DBH	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.2823486328125	2	464.260925	926.507297	0.76783	0.00035647	-0.50442	-0.00023418	0.26341	0.00012229	464.260562740304	96.806	1.3562	94.38	94.015	95.371	-2.4256					44	26	2	0	0	0	0.026464	1	8549	8549		69.628	20.186	1	210040	+		20924	18642	17070	17093	23287	23287					0.04110365177609765
ISWLFHCR	8	Unmodified	_ISWLFHCR_					0	0	0		ENST00000449943.5_1_11:64900197-64901072:-|nuORF;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1;ENST00000533685.1_1_11:64900197-64900596:-|nuORF	ENST00000449943.5_1_11:64900197-64901072:-|nuORF	ENST00000449943.5_1_11:64900197-64901072:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.8247680664062	2	531.271104	1060.52766	2.0728	0.0011012	1.2143	0.00064511	3.2871	0.0017463	531.2721616949925	136.79	0.47929	136.79	136.54	137.01	0					14	9	3	0	0	0	0.028476	1	15954	15954		25.45	5.4534	1	39834			20925	6167	17071	17094	23288	23288					-0.00018742643578661955
ISWSRRKH	8	Unmodified	_ISWSRRKH_					0	0	0			REV__ENSG00000253251|ENST00000510585|SHLD3	REV__ENSG00000253251|ENST00000510585|SHLD3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.327392578125	2	535.304324	1068.5941	-0.61959	-0.00033167	-0.98618	-0.00052791	-1.6058	-0.00085958	535.303820777773	60.649	0.59655	57.219	56.947	57.544	-3.43					19	11	2	0	0	0	0.028476	1	4091	4091		16.473	0	1	104690	+		20926	23501	17072	17095	23289	23289					0.06254209242706565
ISWTFYFC	8	Unmodified	_ISWTFYFC_					0	0	0		ENST00000590310.1_1_17:43174544-43177067:+|nuORF	ENST00000590310.1_1_17:43174544-43177067:+|nuORF	ENST00000590310.1_1_17:43174544-43177067:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.2796630859375	2	533.738771	1065.46299	-1.5751	-0.00084067	-1.8734	-0.0009999	-3.4485	-0.0018406	533.7375073083318	127.87	0.56766	126.43	126.09	126.66	-1.4357					16	10	2	0	0	0	0.028476	1	12230	12230		21.702	0	1	15747			20927	14103	17073	17096	23290	23290					-0.06712362240205039
ISWTSSRVD	9	Unmodified	_ISWTSSRVD_					0	0	0		ENSG00000109674|ENST00000264596|NEIL3	ENSG00000109674|ENST00000264596|NEIL3	ENSG00000109674|ENST00000264596|NEIL3	MULTI-SECPEP	OvCa9_classI_Rep3	3	524.7843017578125	2	525.764363	1049.51417	-0.98207	-0.00051634	1.8994	0.00099865	0.91735	0.00048231	525.7650693505402	97.835	1.2615	96.075	95.62	96.882	-1.7595					32	24	2	0	0	0	0.027462	1	6596	6596		26.693	4.733	1	32127			20928	2724	17074	17097	23291	23291					-0.008603219417864238
ISYAITQLA	9	Unmodified	_ISYAITQLA_					0	0	0			REV__nc|ENSG00000148248|O15260-3|SURF4	REV__nc|ENSG00000148248|O15260-3|SURF4	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.2771301269531	2	490.276575	978.538597	1.3458	0.00065983	-3.4878	-0.00171	-2.142	-0.0010501	490.27490697874697	86.414	2.5432	83.787	83.061	85.605	-2.6269					117	50	3	0	0	0	0.10502	1	7357	7357		95.815	0	1	4106400	+		20929	20096	17075	17098	23292	23292					0.048469382116991255
ISYDHMNILG	10	Unmodified	_ISYDHMNILG_					0	0	0		tr|A0A7D6VY97|A0A7D6VY97_9CLOTtetrahydrofolatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14960PE=3SV=1	tr|A0A7D6VY97|A0A7D6VY97_9CLOTtetrahydrofolatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14960PE=3SV=1	tr|A0A7D6VY97|A0A7D6VY97_9CLOTtetrahydrofolatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14960PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	580.8391723632812	2	581.781699	1161.54884	-2.4518	-0.0014264	1.7689	0.0010291	-0.68294	-0.00039732	581.7823193468715	92.62	0.46676	90.658	90.514	90.981	-1.9617					13	9	2	0	0	0	0.026994	1	5881	5881		32.812	11.127	1	31507			20930	35324	17076	17099	23293	23293					-0.025468221253504453
ISYGKWLDIL	10	Unmodified	_ISYGKWLDIL_					0	0	0			REV__tr|A0A7D7A1Z8|A0A7D7A1Z8_9CLOTStageIIsporulationproteinMOS=ClostridiumintestinaleOX=36845GN=spoIIMPE=4SV=1	REV__tr|A0A7D7A1Z8|A0A7D7A1Z8_9CLOTStageIIsporulationproteinMOS=ClostridiumintestinaleOX=36845GN=spoIIMPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	604.3440551757812	2	604.339707	1206.66486	1.085	0.00065572	3.2295	0.0019517	4.3145	0.0026074	604.3414125792838	151.29	0.50992	151.29	150.99	151.5	0					23	9	3	0	0	0	0.6349	1	17709	17709		37.812	2.1932	1	87065	+		20931	32515	17077	17100	23294	23294					0.06979444716989747
ISYIITDAH	9	Unmodified	_ISYIITDAH_					0	0	0			REV__nc|ENSG00000166575|Q86UB9-2|TMEM135	REV__nc|ENSG00000166575|Q86UB9-2|TMEM135	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.30419921875	2	516.771657	1031.52876	2.1108	0.0010908	-2.5101	-0.0012971	-0.3993	-0.00020634	516.7704136067094	124.81	1.0938	123.76	123.22	124.32	-1.0519					29	20	2	0	0	0	0.027462	1	9716	9716		37.159	5.2042	1	23278	+		20932	21207	17078	17101	23295	23295					0.014257502063401262
ISYIITDAH	9	Unmodified	_ISYIITDAH_					0	0	0			REV__nc|ENSG00000166575|Q86UB9-2|TMEM135	REV__nc|ENSG00000166575|Q86UB9-2|TMEM135	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	516.771657	1031.52876	-1.5949	-0.00082418	1.2869	0.00066504	-0.30794	-0.00015913	516.7721821352561	124.89	0.57175	123.5	123.28	123.86	-1.3908	-0.12817	0.0017734	NaN	37.159	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25459	+		20933	21207	17078	17101							0.014257502063401262
ISYKRFSN	8	Unmodified	_ISYKRFSN_					0	0	0		tr|A0A7D6VQ84|A0A7D6VQ84_9CLOTAryl-sulfatesulfotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19800PE=4SV=1	tr|A0A7D6VQ84|A0A7D6VQ84_9CLOTAryl-sulfatesulfotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19800PE=4SV=1	tr|A0A7D6VQ84|A0A7D6VQ84_9CLOTAryl-sulfatesulfotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19800PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.7944030761719	2	507.771991	1013.52943	-0.9269	-0.00047066	3.8592	0.0019596	2.9323	0.0014889	507.773873690843	52.89	0.95346	49.682	49.4	50.354	-3.208					49	18	3	0	0	0	0.028476	1	3218	3218		35.618	0	1	248930			20934	34828	17079	17102	23296	23296					0.023205896460467557
ISYKRSLVS	9	Unmodified	_ISYKRSLVS_					0	0	0			REV__ENSG00000244306.11,DUXAP10,chr14,-,I11.1,19284795,19292525|71|14.4|1|intron	REV__ENSG00000244306.11,DUXAP10,chr14,-,I11.1,19284795,19292525|71|14.4|1|intron	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2875366210938	2	526.808574	1051.60259	0.4212	0.00022189	-1.6354	-0.00086156	-1.2142	-0.00063967	526.8082512786059	160.08	0.49861	160.08	159.86	160.35	0					23	9	3	0	0	0	0.027462	1	18796	18796		6.7355	0	1	161860	+		20935	23476	17080	17103	23297	23297					0.07885718368675043
ISYLEQVSE	9	Unmodified	_ISYLEQVSE_					0	0	0			REV__ENSG00000086288|ENST00000199447|NME8	REV__ENSG00000086288|ENST00000199447|NME8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.3186645507812	2	534.266404	1066.51826	-2.2392	-0.0011963	2.0311	0.0010851	-0.20812	-0.00011119	534.2669658128204	72.722	0.34011	69.326	69.009	69.349	-3.3961					13	6	3	0	0	0	0.027462	1	5565	5565		20.947	0	1	20992	+		20936	17148	17081	17104	23298	23298					-0.012342772387455625
ISYLEQVSE	9	Unmodified	_ISYLEQVSE_					0	0	0			REV__ENSG00000086288|ENST00000199447|NME8	REV__ENSG00000086288|ENST00000199447|NME8	MULTI-MATCH	OvCa99_classI_Rep5	1		2	534.266404	1066.51826	-0.033595	-1.7949E-05	0.10941	5.8452E-05	0.075811	4.0503E-05	534.2662466153563	69.176	0.32977	69.176	68.977	69.307	0	-0.074577	-0.0012796	NaN	40.778	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	357010	+		20937	17148	17081	17104							-0.012342772387455625
ISYLIFRI	8	Unmodified	_ISYLIFRI_					0	0	0			REV__tr|A0A7D6ZFB2|A0A7D6ZFB2_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14305PE=4SV=1	REV__tr|A0A7D6ZFB2|A0A7D6ZFB2_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14305PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.2607421875	2	512.813128	1023.6117	-0.030255	-1.5515E-05	-4.287	-0.0021984	-4.3172	-0.0022139	512.8107864933697	56.51	1.3182	53.215	52.87	54.188	-3.2944					64	25	3	0	0	0	0.028476	1	3665	3665		25.45	0	1	609590	+		20938	31964	17082	17105	23299	23299					0.10084111724984268
ISYNKVADI	9	Unmodified	_ISYNKVADI_					0	0	0			REV__nc|ENSG00000198739|Q86VH5-2|LRRTM3	REV__nc|ENSG00000198739|Q86VH5-2|LRRTM3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.84747314453125	2	511.779482	1021.54441	1.2153	0.00062195	0.51452	0.00026332	1.7298	0.00088527	511.77975648470033	85.599	0.78811	82.952	82.755	83.543	-2.6463					20	15	2	0	0	0	0.027461	1	7209	7209		25.574	3.6142	1	53403	+		20939	23056	17083	17106	23300	23300					0.034500367233818
ISYNTFAL	8	Unmodified	_ISYNTFAL_					0	0	0			REV__tr|A0A7D6W138|A0A7D6W138_9CLOTDUF1648domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02270PE=4SV=1	REV__tr|A0A7D6W138|A0A7D6W138_9CLOTDUF1648domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02270PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	464.28009033203125	2	464.742368	927.470183	-0.5506	-0.00025589	-3.3469	-0.0015555	-3.8975	-0.0018113	464.7408659562737	81.288	0.60932	78.966	78.749	79.359	-2.3226					16	11	2	0	0	0	0.028476	1	4503	4503		65.803	26.997	1	20233	+		20940	31875	17084	17107	23301	23301					0.003546936318684857
ISYPLENR	8	Unmodified	_ISYPLENR_					0	0	0		nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-MSMS	OvCa9_classI_Rep3	3	496.2666931152344	2	496.263999	990.513445	1.8637	0.0009249	1.0785	0.0005352	2.9422	0.0014601	496.2643848501877	59.438	2.028	56.339	55.347	57.375	-3.0993					83	55	2	0	0	0	0.745	1	1996	1996		29.15	0	1	32593			20941	15208	17085	17108	23302	23302					0.017808834091511017
ISYRENATI	9	Unmodified	_ISYRENATI_					0	0	0		tr|A0A7D6VM62|A0A7D6VM62_9CLOTWingedhelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_14085PE=4SV=1	tr|A0A7D6VM62|A0A7D6VM62_9CLOTWingedhelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_14085PE=4SV=1	tr|A0A7D6VM62|A0A7D6VM62_9CLOTWingedhelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_14085PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.7801513671875	2	533.780013	1065.54547	-2.2179	-0.0011839	1.7819	0.00095115	-0.43599	-0.00023272	533.7808028137017	72.515	1.6491	69.119	68.813	70.462	-3.3961					66	33	4	0	0	0	0.49652	1	5591	5591		42.864	0.46813	1	549480			20942	34647	17086	17109	23303	23303					0.015322510922715082
ISYRNALRK	9	Unmodified	_ISYRNALRK_					0	0	0		ENSG00000065882|ENST00000698857|TBC1D1;nc|ENSG00000065882|Q86TI0-2|TBC1D1;ENST00000469803.1_1_4:38051397-38056602:+|nuORF	ENSG00000065882|ENST00000698857|TBC1D1	ENSG00000065882|ENST00000698857|TBC1D1	MULTI-MSMS	OvCa99_classI_Rep5	1	560.836181640625	2	560.832914	1119.65128	0.11493	6.4454E-05	3.473	0.0019478	3.5879	0.0020122	560.8347490707145	59.012	0.71999	59.012	58.774	59.494	0					46	18	4	0	0	0	0.44568	1	5078	5078		47.657	1.6851	1	4267100			20943	1338	17087	17110	23304	23304					0.09623631728413784
ISYRSLSFI	9	Unmodified	_ISYRSLSFI_					0	0	0		tr|A0A7D6ZXZ0|A0A7D6ZXZ0_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00095PE=4SV=1	tr|A0A7D6ZXZ0|A0A7D6ZXZ0_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00095PE=4SV=1	tr|A0A7D6ZXZ0|A0A7D6ZXZ0_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00095PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	543.3042602539062	2	543.303124	1084.5917	2.224	0.0012083	-0.42726	-0.00023213	1.7968	0.0009762	543.3027951252732	121.83	2.1303	121.83	121.38	123.51	0					103	45	5	0	0	0	0.015391	3	14029	14005;14029;14055		152.47	21.439	1	7420500			20944	35900	17088	17111	23305;23306;23307	23306					0.05278315994382865
ISYRSLSFI	9	Unmodified	_ISYRSLSFI_					0	0	0		tr|A0A7D6ZXZ0|A0A7D6ZXZ0_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00095PE=4SV=1	tr|A0A7D6ZXZ0|A0A7D6ZXZ0_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00095PE=4SV=1	tr|A0A7D6ZXZ0|A0A7D6ZXZ0_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00095PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.3013916015625	2	543.303124	1084.5917	-0.57151	-0.00031051	-0.12697	-6.8981E-05	-0.69848	-0.00037949	543.303345375812	123.29	1.3918	121.93	121.65	123.05	-1.3666					60	27	3	0	0	0	0.37135	1	11678	11678		54.776	0	1	178890			20945	35900	17088	17111	23308	23308					0.05278315994382865
ISYSYGSCQI	10	Unmodified	_ISYSYGSCQI_					0	0	0			REV__tr|A0A7D7A2S3|A0A7D7A2S3_9CLOTIsocitratelyase/phosphoenolpyruvatemutasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09695PE=4SV=1	REV__tr|A0A7D7A2S3|A0A7D7A2S3_9CLOTIsocitratelyase/phosphoenolpyruvatemutasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09695PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	560.7523193359375	2	560.752607	1119.49066	1.9635	0.0011011	-2.6242	-0.0014715	-0.66066	-0.00037047	560.7510017613697	91.149	1.2225	91.149	90.656	91.879	0					92	29	4	0	0	0	0.48198	1	9782	9782		56.721	1.9447	1	9254000	+		20946	32550	17089	17112	23309	23309					-0.06430503770639007
ISYVGVGFSIL	11	Unmodified	_ISYVGVGFSIL_					0	0	0		nc|ENSG00000069122|Q8IZF2-3|ADGRF5;nc|ENSG00000069122|Q8IZF2-2|ADGRF5;ENSG00000069122|ENST00000283296|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	nc|ENSG00000069122|Q8IZF2-3|ADGRF5	MULTI-MSMS	OvCa99_classI_Rep5	1	577.8292236328125	2	577.826432	1153.63831	1.555	0.00089854	0.28678	0.00016571	1.8418	0.0010642	577.8260484113454	92.067	0.50616	92.067	91.879	92.385	0					32	11	4	0	0	0	0.48738	1	9935	9935		54.776	3.5836	1	1011400			20947	1404	17090	17113	23310	23310					0.06763755825681983
ISYVQNKS	8	Unmodified	_ISYVQNKS_					0	0	0		nc|ENSG00000140525|Q9NVI1-2|FANCI;nc|ENSG00000140525|Q9NVI1-1|FANCI;ENSG00000140525|ENST00000310775|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-MSMS	OvCa9_classI_Rep2	2	469.750244140625	2	469.750724	937.486896	-1.259	-0.00059142	1.3556	0.0006368	0.096614	4.5384E-05	469.7511923496125	68.222	1.783	65.601	64.982	66.765	-2.6203					91	35	3	0	0	0	0.50747	1	5368	5368		76.774	1.7308	1	721920			20948	4855	17091	17114	23311	23311					0.015651945178206006
ISYVWPRA	8	Unmodified	_ISYVWPRA_					0	0	0			REV__ENST00000371614.1_1_1:52498182-52498248:-|nuORF	REV__ENST00000371614.1_1_1:52498182-52498248:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	496.2727355957031	2	496.271627	990.528701	2.1023	0.0010433	0.60829	0.00030188	2.7106	0.0013452	496.27174568895117	86.899	0.9912	86.899	86.637	87.628	0					53	23	4	0	0	0	0.61758	1	9208	9208		60.294	14.342	1	2532100	+		20949	24985	17092	17115	23312	23312					0.03305794996992972
ITAIDHRK	8	Unmodified	_ITAIDHRK_					0	0	0			REV__tr|A0A553SUG9|A0A553SUG9_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_07010PE=4SV=1	REV__tr|A0A553SUG9|A0A553SUG9_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_07010PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	477.2925109863281	2	477.279983	952.545414	0.24511	0.00011699	-2.6795	-0.0012789	-2.4344	-0.0011619	477.2778781217068	74.776	0.24557	72.365	72.29	72.536	-2.4106					6	4	2	0	0	0	0.028476	1	3738	3738		68.787	5.4806	1	14104	+		20950	31075	17093	17116	23313	23313					0.06724295882941078
ITAIFKRI	8	Unmodified	_ITAIFKRI_					0	0	0			REV__tr|A0A7D6VX96|A0A7D6VX96_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11985PE=4SV=1	REV__tr|A0A7D6VX96|A0A7D6VX96_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11985PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	481.3131103515625	2	481.313295	960.612037	1.817	0.00087454	-1.9869	-0.0009563	-0.16987	-8.1761E-05	481.31217861874296	112.56	2.0052	111.49	110.97	112.98	-1.0753					88	39	4	0	0	0	0.65062	3	8252	8221;8240;8252		53.351	7.1458	1	315220	+		20951	31771	17094	17117	23314;23315;23316	23316					0.130155314448416
ITAIFKRI	8	Unmodified	_ITAIFKRI_					0	0	0			REV__tr|A0A7D6VX96|A0A7D6VX96_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11985PE=4SV=1	REV__tr|A0A7D6VX96|A0A7D6VX96_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11985PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.31268310546875	2	481.313295	960.612037	0.23329	0.00011228	-0.56103	-0.00027003	-0.32775	-0.00015775	481.31286467483017	112.83	1.2876	111.39	110.91	112.2	-1.4461					73	25	4	0	0	0	0.66057	2	10449	10426;10449		51.335	3.4199	1	383100	+		20952	31771	17094	17117	23317;23318	23318					0.130155314448416
ITAIFSHDR	9	Unmodified	_ITAIFSHDR_					0	0	0			REV__ENSG00000176204|ENST00000409884|LRRTM4	REV__ENSG00000176204|ENST00000409884|LRRTM4	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.8112182617188	2	530.282723	1058.55089	1.3963	0.00074041	-1.2111	-0.00064223	0.18514	9.8176E-05	530.2820122281775	111.91	0.41351	111.91	111.65	112.06	0					18	8	3	0	0	0	0.027456	1	12727	12727		30.504	15.639	1	120340	+		20953	21938	17095	17118	23319	23319					0.023959746747550525
ITAIFSHDR	9	Unmodified	_ITAIFSHDR_					0	0	0			REV__ENSG00000176204|ENST00000409884|LRRTM4	REV__ENSG00000176204|ENST00000409884|LRRTM4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.282723	1058.55089	-0.19727	-0.00010461	-7.2655	-0.0038528	-7.4628	-0.0039574	530.2788355878805	112.22	0.69113	112.1	111.78	112.48	-0.12174	0.16261	-0.00043845	NaN	23.042	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24050	+		20954	21938	17095	17118							0.023959746747550525
ITAIFSHDR	9	Unmodified	_ITAIFSHDR_					0	0	0			REV__ENSG00000176204|ENST00000409884|LRRTM4	REV__ENSG00000176204|ENST00000409884|LRRTM4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	530.282723	1058.55089	1.4131	0.00074935	-8.763	-0.0046469	-7.3499	-0.0038975	530.277933701227	112.92	0.63586	111.85	111.51	112.15	-1.0753	-0.088792	-0.0020266	NaN	23.042	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38177	+		20955	21938	17095	17118							0.023959746747550525
ITAIFSHDR	9	Unmodified	_ITAIFSHDR_					0	0	0			REV__ENSG00000176204|ENST00000409884|LRRTM4	REV__ENSG00000176204|ENST00000409884|LRRTM4	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	530.282723	1058.55089	-0.45079	-0.00023905	-6.2049	-0.0032903	-6.6556	-0.0035294	530.2794601242026	113.33	0.63582	111.88	111.61	112.24	-1.4461	-0.05218	0.00068643	NaN	23.042	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40493	+		20956	21938	17095	17118							0.023959746747550525
ITAIKKGDPS	10	Unmodified	_ITAIKKGDPS_					0	0	0			REV__nc|ENSG00000113593|Q96BP3-2|PPWD1	REV__nc|ENSG00000113593|Q96BP3-2|PPWD1	MULTI-MSMS	OvCa9_classI_Rep3	3	515.2987670898438	2	515.300581	1028.58661	0.83581	0.00043069	-0.7626	-0.00039297	0.07321	3.7725E-05	515.299976511872	104.08	1.3531	102.65	102.39	103.75	-1.4347					65	25	3	0	0	0	0.53807	1	7230	7230		49.536	1.5765	1	459290	+		20957	18160	17096	17119	23320	23320					0.07346012131756652
ITAILNPVL	9	Unmodified	_ITAILNPVL_					0	0	0		OR4X2|p.I278L|1|0.25|ENSG00000172208|chr11:48245935-48245935|A/C|missense_variant	OR4X2|p.I278L|1|0.25|ENSG00000172208|chr11:48245935-48245935|A/C|missense_variant	OR4X2|p.I278L|1|0.25|ENSG00000172208|chr11:48245935-48245935|A/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.2922668457031	2	477.305136	952.595718	-0.67076	-0.00032016	1.8474	0.00088179	1.1767	0.00056164	477.30515893822553	74.441	0.3674	72.469	72.219	72.586	-1.9711					8	6	2	0	0	0	0.027418	1	6081	6081		71.877	0	1	7730.5			20958	15459	17097	17120	23321	23321					0.11752405488095974
ITAKVATHL	9	Unmodified	_ITAKVATHL_					0	0	0		nc|ENSG00000116147|Q92752-2|TNR;ENSG00000116147|ENST00000367674|TNR	nc|ENSG00000116147|Q92752-2|TNR	nc|ENSG00000116147|Q92752-2|TNR	MULTI-MSMS	OvCa99_classI_Rep5	1	477.293701171875	2	477.292559	952.570566	-0.044958	-2.1458E-05	0.16025	7.6485E-05	0.11529	5.5027E-05	477.2925169309121	73.135	1.9425	73.135	72.574	74.517	0					128	49	4	0	0	0	0.28934	1	7123	7123		64.207	3.2353	1	9896800			20959	3159	17098	17121	23322	23322					0.09238350685518526
ITAKVATHL	9	Unmodified	_ITAKVATHL_					0	0	0		nc|ENSG00000116147|Q92752-2|TNR;ENSG00000116147|ENST00000367674|TNR	nc|ENSG00000116147|Q92752-2|TNR	nc|ENSG00000116147|Q92752-2|TNR	MULTI-MSMS	OvCa9_classI_Rep2	2	477.2926025390625	2	477.292559	952.570566	-0.67291	-0.00032118	0.083958	4.0073E-05	-0.58895	-0.0002811	477.2925674592951	74.361	2.9718	72.39	71.535	74.507	-1.9711					164	56	5	0	0	0	0.047062	5	6099	6099;6111;6149;6156;6163		120.62	7.1816	1	1681900			20960	3159	17098	17121	23323;23324;23325;23326;23327	23323					0.09238350685518526
ITAKVATHL	9	Unmodified	_ITAKVATHL_					0	0	0		nc|ENSG00000116147|Q92752-2|TNR;ENSG00000116147|ENST00000367674|TNR	nc|ENSG00000116147|Q92752-2|TNR	nc|ENSG00000116147|Q92752-2|TNR	MULTI-MSMS	OvCa9_classI_Rep3	3	477.2931213378906	2	477.292559	952.570566	0.29004	0.00013844	-0.76416	-0.00036473	-0.47411	-0.00022629	477.2921516413295	74.448	4.0947	72.038	71.151	75.246	-2.4106					206	80	5	0	0	0	0.094616	5	3684	3657;3684;3719;3745;3752		98.629	7.5979	1	1964800			20961	3159	17098	17121	23328;23329;23330;23331;23332	23329					0.09238350685518526
ITAKVATHL	9	Unmodified	_ITAKVATHL_					0	0	0		nc|ENSG00000116147|Q92752-2|TNR;ENSG00000116147|ENST00000367674|TNR	nc|ENSG00000116147|Q92752-2|TNR	nc|ENSG00000116147|Q92752-2|TNR	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.29351806640625	2	477.292559	952.570566	0.39694	0.00018945	-1.4485	-0.00069137	-1.0516	-0.00050192	477.29185594906585	75.379	3.415	72.148	71.434	74.849	-3.2308					203	70	5	0	0	0	0.21231	1	6001	6001		74.255	12.148	1	4466900			20962	3159	17098	17121	23333	23333					0.09238350685518526
ITALEAMAQN	10	Unmodified	_ITALEAMAQN_					0	0	0			REV__ENSG00000144962|ENST00000351008|SPATA16	REV__ENSG00000144962|ENST00000351008|SPATA16	MULTI-SECPEP	OvCa9_classI_Rep2	2	530.2984619140625	2	531.268424	1060.5223	-1.6665	-0.00088536	0.43149	0.00022924	-1.235	-0.00065612	531.7705043750497	99.822	0.29709	98.991	98.816	99.113	-0.83051					8	5	2	0	0	0	0.02658	1	9120	9120		45.972	15.469	1	22051	+		20963	19946	17099	17122	23334	23334					-0.005545110166849554
ITALFFATF	9	Unmodified	_ITALFFATF_					0	0	0			REV__ENSG00000096092|ENST00000211314|TMEM14A	REV__ENSG00000096092|ENST00000211314|TMEM14A	MULTI-MSMS	OvCa99_classI_Rep5	1	516.28369140625	2	515.784036	1029.55352	2.3027	0.0011877	-3.9346	-0.0020294	-1.6319	-0.0008417	515.7819059025395	116.16	1.2672	116.16	115.82	117.09	0					46	27	3	0	0	0	0.24951	1	13310	13310		68.787	10.976	1	2143200	+		20964	17303	17100	17123	23335	23335					0.039924300797110845
ITALPIVALPL	11	Unmodified	_ITALPIVALPL_					0	0	0		ENST00000372490.3_1_9:131939407-131971282:+|nuORF;ENST00000451229.1_1_9:131963759-131971282:+|nuORF;ENSG00000235007|ENST00000674648|unknown	ENST00000372490.3_1_9:131939407-131971282:+|nuORF	ENST00000372490.3_1_9:131939407-131971282:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.8065795898438	2	560.870643	1119.72673	2.2055	0.001237	-3.3884	-0.0019004	-1.1829	-0.00066346	560.8676826186078	127.05	0.18317	127.05	126.91	127.1	0					6	3	2	0	0	0	0.02601	1	14704	14704		15.642	5.9362	1	56008			20965	9304	17101	17124	23336	23336					0.17165796136146128
ITALRKEL	8	Unmodified	_ITALRKEL_					0	0	0		tr|A0A7D7A4G8|A0A7D7A4G8_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01670PE=4SV=1	tr|A0A7D7A4G8|A0A7D7A4G8_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01670PE=4SV=1	tr|A0A7D7A4G8|A0A7D7A4G8_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01670PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.2850341796875	2	472.300384	942.586216	-0.26948	-0.00012728	-0.22082	-0.0001043	-0.4903	-0.00023157	472.30013796577373	88.815	0.94037	86.212	85.882	86.823	-2.6027					34	18	2	0	0	0	0.028476	1	7647	7647		42.396	5.237	1	98977			20966	36144	17102	17125	23337	23337					0.112626372025602
ITAPPSRVL	9	Unmodified	_ITAPPSRVL_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	OvCa99_classI_Rep5	1	477.29388427734375	2	477.292559	952.570566	-0.044958	-2.1458E-05	0.16025	7.6485E-05	0.11529	5.5027E-05	477.2925169309121	73.135	1.9425	73.135	72.574	74.517	0					128	49	4	0	0	0	0.14855	2	7151	7151;7242		85.161	6.8607	1	9896800			20967	1958	17103	17126	23338;23339	23338					0.09238350685518526
ITAPPSRVL	9	Unmodified	_ITAPPSRVL_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	OvCa9_classI_Rep2	2	477.2924499511719	2	477.292559	952.570566	-0.67291	-0.00032118	0.083958	4.0073E-05	-0.58895	-0.0002811	477.2925674592951	74.361	2.9718	72.39	71.535	74.507	-1.9711					164	56	5	0	0	0	0.070405	10	6075	6069;6075;6087;6093;6105;6118;6125;6131;6137;6143		107.01	18.888	1	1681900			20968	1958	17103	17126	23340;23341;23342;23343;23344;23345;23346;23347;23348;23349	23341					0.09238350685518526
ITAPPSRVL	9	Unmodified	_ITAPPSRVL_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	OvCa9_classI_Rep3	3	477.29302978515625	2	477.292559	952.570566	0.29004	0.00013844	-0.76416	-0.00036473	-0.47411	-0.00022629	477.2921516413295	74.448	4.0947	72.038	71.151	75.246	-2.4106					206	80	5	0	0	0	0.055627	9	3690	3661;3667;3678;3690;3696;3707;3713;3732;3759		115.49	30.579	1	1964800			20969	1958	17103	17126	23350;23351;23352;23353;23354;23355;23356;23357;23358	23353					0.09238350685518526
ITAPPSRVL	9	Unmodified	_ITAPPSRVL_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.2929992675781	2	477.292559	952.570566	0.39694	0.00018945	-1.4485	-0.00069137	-1.0516	-0.00050192	477.29185594906585	75.379	3.415	72.148	71.434	74.849	-3.2308					203	70	5	0	0	0	0.043101	6	5941	5917;5941;5953;5965;5977;6013		124.08	30.579	1	4466900			20970	1958	17103	17126	23359;23360;23361;23362;23363;23364	23360					0.09238350685518526
ITAQILTPGS	10	Unmodified	_ITAQILTPGS_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.8280944824219	2	500.787307	999.560061	-0.76588	-0.00038354	1.025	0.00051331	0.25913	0.00012977	500.7876113190684	73.937	0.89346	71.966	71.273	72.167	-1.9711					27	16	2	0	0	0	0.027632	1	6047	6047		98.629	19.178	1	21682	+		20971	17764	17104	17127	23365	23365					0.06026323240428155
ITAQMSQLEL	10	Unmodified	_ITAQMSQLEL_					0	0	0		EIF4ENIF1|p.G890Efs*89|1|0.51|ENSG00000184708|chr22:31440751-31440751|C/-|frameshift_variant;ENSG00000184708|ENST00000330125|EIF4ENIF1	EIF4ENIF1|p.G890Efs*89|1|0.51|ENSG00000184708|chr22:31440751-31440751|C/-|frameshift_variant	EIF4ENIF1|p.G890Efs*89|1|0.51|ENSG00000184708|chr22:31440751-31440751|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.3212890625	2	567.297181	1132.57981	1.7634	0.0010004	3.3026	0.0018736	5.066	0.0028739	567.2989649152829	86.638	0.88632	84.011	83.512	84.399	-2.6269					26	17	2	0	0	0	0.027841	1	7278	7278		93.143	2.7734	1	57211			20972	792	17105	17128	23366	23366					0.018823311888581884
ITAVQPVSL	9	Unmodified	_ITAVQPVSL_					0	0	0			REV__ENSG00000164946|ENST00000380880|FREM1	REV__ENSG00000164946|ENST00000380880|FREM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.2384033203125	2	464.279118	926.543683	-0.29543	-0.00013716	2.0244	0.00093987	1.7289	0.0008027	464.2799155934912	47.824	0.38862	47.824	47.595	47.984	0					13	8	2	0	0	0	0.027462	1	3491	3491		25.574	10.709	1	126900	+		20973	21042	17106	17129	23367	23367					0.07747242074333371
ITAWNRSIV	9	Unmodified	_ITAWNRSIV_					0	0	0		tr|A0A553SGJ3|A0A553SGJ3_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10935PE=4SV=1	tr|A0A553SGJ3|A0A553SGJ3_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10935PE=4SV=1	tr|A0A553SGJ3|A0A553SGJ3_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10935PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	530.2992553710938	2	530.300916	1058.58728	-0.044695	-2.3702E-05	-4.0298	-0.002137	-4.0745	-0.0021607	530.2986629314781	30.396	1.3311	27.686	27.458	28.789	-2.7097					67	26	4	0	0	0	0.59983	1	876	876		31.955	1.6371	1	398640			20974	33162	17107	17130	23368	23368					0.0603285157146729
ITCIQPQAL	9	Unmodified	_ITCIQPQAL_					0	0	0			REV__ENST00000548709.1_1_12:56490921-56492754:+|nuORF	REV__ENST00000548709.1_1_12:56490921-56492754:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.3180847167969	2	493.770603	985.526652	-0.089882	-4.4381E-05	-3.2373	-0.0015985	-3.3272	-0.0016429	493.7690287574276	104.87	1.3641	102.75	102.48	103.85	-2.1192					43	26	2	0	0	0	0.027232	1	9566	9566		66.429	0	1	74950	+		20975	16791	17108	17131	23369	23369					0.03330998196861401
ITCKPITRFMA	11	Unmodified	_ITCKPITRFMA_					0	0	0			REV__nc|ENSG00000007350|P51854-4|TKTL1	REV__nc|ENSG00000007350|P51854-4|TKTL1	MULTI-SECPEP	OvCa9_classI_Rep2	2	428.2685852050781	3	427.566638	1279.67808	-0.95051	-0.00040641	1.7989	0.00076917	0.84843	0.00036276	427.90188657217647	56.994	1.3873	54.202	53.436	54.823	-2.792					36	27	2	0	0	0	0.025268	1	4014	4014		48.602	8.7284	1	15272	+		20976	16434	17109	17132	23370	23370					0.04943236233066273
ITDAAAAEPGL	11	Unmodified	_ITDAAAAEPGL_					0	0	0			REV__ENST00000569796.1_1_16:2285204-2285570:+|nuORF	REV__ENST00000569796.1_1_16:2285204-2285570:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.2791137695312	2	514.766571	1027.51859	0.56299	0.00028981	1.8237	0.00093876	2.3867	0.0012286	514.767279419399	141.62	0.64902	141.62	141.34	141.98	0					24	12	3	0	0	0	0.025298	1	16539	16539		47.657	7.0847	1	48772	+		20977	21322	17110	17133	23371	23371					0.005931424811024044
ITDDHKLA	8	Unmodified	_ITDDHKLA_					0	0	0		CON__A2I7N3	CON__A2I7N3	CON__A2I7N3	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.7436828613281	2	456.742899	911.471246	-0.14918	-6.8138E-05	0.1443	6.5907E-05	-0.0048857	-2.2315E-06	456.7428091959259	74.432	2.3975	71.201	70.676	73.074	-3.2308					111	49	4	0	0	0	0.50674	1	5833	5833		76.847	2.8719	1	857600		+	20978	599	17111	17134	23372	23372					0.011969080007588673
ITDFPEGHS	9	Unmodified	_ITDFPEGHS_					0	0	0		nc|ENSG00000109756|Q9Y4G8|RAPGEF2;ENSG00000109756|ENST00000691494|RAPGEF2	nc|ENSG00000109756|Q9Y4G8|RAPGEF2	nc|ENSG00000109756|Q9Y4G8|RAPGEF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.75994873046875	2	501.729989	1001.44543	0.33914	0.00017016	4.333	0.002174	4.6721	0.0023441	502.2333863537388	74.018	0.49379	74.018	73.755	74.249	0					20	12	2	0	0	0	0.027426	1	7314	7314		35.618	2.8059	1	363210			20979	2731	17112	17135	23373	23373					-0.055239862415191965
ITDTARLLV	9	Unmodified	_ITDTARLLV_					0	0	0			REV__nc|ENSG00000164818|Q86Y56-2|DNAAF5	REV__nc|ENSG00000164818|Q86Y56-2|DNAAF5	MULTI-MSMS	OvCa9_classI_Rep2	2	501.30230712890625	2	501.303124	1000.5917	-1.2153	-0.00060923	1.0717	0.00053725	-0.1436	-7.1985E-05	501.3034674423479	99.272	2.0867	98.379	97.707	99.794	-0.89305					95	41	4	0	0	0	0.24951	1	9043	9043		68.787	0	1	344590	+		20980	21022	17113	17136	23374	23374					0.09142315994381534
ITEFVLLGF	9	Unmodified	_ITEFVLLGF_					0	0	0		nc|ENSG00000225997|P0C604|OR4A8;ENSG00000221840|ENST00000319760|OR4A5;ENSG00000204694|ENST00000377149|OR11A1	nc|ENSG00000225997|P0C604|OR4A8;ENSG00000204694|ENST00000377149|OR11A1	ENSG00000204694|ENST00000377149|OR11A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.7979125976562	2	519.797143	1037.57973	-1.063	-0.00055253	-2.4962	-0.0012975	-3.5591	-0.00185	519.7959208255018	80.444	2.0492	77.733	77.269	79.318	-2.7106					127	41	6	0	0	0	0.30002	1	6548	6548		62.978	5.1671	1	4928100			20981	15322;9020	17114	17137	23375	23375					0.062446992512150246
ITEIVDEKFD	10	Unmodified	_ITEIVDEKFD_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	604.2483520507812	2	604.805894	1207.59723	1.1906	0.00072006	1.5134	0.00091532	2.704	0.0016354	604.8063672129625	124.4	0.55032	124.4	124.06	124.61	0					25	11	3	0	0	0	0.026688	1	14342	14342		40.778	1.972	1	296330	+		20982	17073	17115	17138	23376	23376					0.0017394999549651402
ITEKELANSKE	11	Unmodified	_ITEKELANSKE_					0	0	0		tr|A0A553SNY3|A0A553SNY3_NIACIInsulinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25245PE=3SV=1	tr|A0A553SNY3|A0A553SNY3_NIACIInsulinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25245PE=3SV=1	tr|A0A553SNY3|A0A553SNY3_NIACIInsulinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25245PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	631.333984375	2	631.33535	1260.65615	-0.24957	-0.00015756	1.9404	0.0012251	1.6908	0.0010675	631.3365935308134	66.385	1.4888	63.689	63.418	64.907	-2.6958					83	29	4	0	0	0	0.40612	1	5153	5153		29.551	6.9711	1	672470			20983	33978	17116	17139	23377	23377					0.03624426289843541
ITELKRQN	8	Unmodified	_ITELKRQN_					0	0	0		ENSG00000176542|ENST00000316407|USF3	ENSG00000176542|ENST00000316407|USF3	ENSG00000176542|ENST00000316407|USF3	MULTI-MSMS	OvCa9_classI_Rep2	2	501.29107666015625	2	501.290548	1000.56654	-0.80197	-0.00040202	0.50048	0.00025089	-0.30149	-0.00015113	501.2906816095173	135.63	4.8104	135.4	133.71	138.52	-0.22697					221	98	3	0	0	0	0.74229	1	13596	13596		30.504	3.7075	1	70595			20984	7613	17117	17140	23378	23378					0.06628261191792717
ITENSLIYLN	10	Unmodified	_ITENSLIYLN_					0	0	0		ENST00000416479.1_2_1:101354374-101360199:-|nuORF	ENST00000416479.1_2_1:101354374-101360199:-|nuORF	ENST00000416479.1_2_1:101354374-101360199:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.7720336914062	2	590.316428	1178.6183	1.5736	0.00092893	0.67552	0.00039877	2.2491	0.0013277	590.3169239343948	112.29	0.46178	112.29	111.97	112.43	0					16	9	2	0	0	0	0.026659	1	12774	12774		45.972	0	1	110590			20985	11604	17118	17141	23379	23379					0.03613960095049151
ITEQKPALN	9	Unmodified	_ITEQKPALN_					0	0	0			REV__nc|ENSG00000100888|Q9HCK8-2|CHD8	REV__nc|ENSG00000100888|Q9HCK8-2|CHD8	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.809814453125	2	507.284931	1012.55531	1.4257	0.00072321	-3.8362	-0.001946	-2.4105	-0.0012228	507.7833933664026	88.429	0.68839	87.061	86.592	87.28	-1.3676					13	13	2	0	0	0	0.02741	1	7761	7761		60.972	11.53	1	10483	+		20986	17456	17119	17142	23380	23380					0.04953439097664614
ITESRQVVE	9	Unmodified	_ITESRQVVE_					0	0	0		nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT;nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF	nc|ENSG00000122966|O14578|CIT	nc|ENSG00000122966|O14578|CIT	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.33984375	2	530.785296	1059.55604	2.8961	0.0015372	-3.4565	-0.0018347	-0.56046	-0.00029748	530.7837809988038	90.046	0.25236	90.046	89.891	90.143	0					8	5	2	0	0	0	0.027462	1	9635	9635		27.882	0	1	601110			20987	3566	17120	17143	23381	23381					0.028642337467317702
ITEVKNTIN	9	Unmodified	_ITEVKNTIN_					0	0	0			REV__tr|A0A553SR40|A0A553SR40_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_00195PE=3SV=1	REV__tr|A0A553SR40|A0A553SR40_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_00195PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.2271118164062	2	516.290214	1030.56587	1.0473	0.0005407	-0.31844	-0.00016441	0.72884	0.00037629	516.2894660355503	85.052	0.39536	82.406	82.215	82.61	-2.6463					13	7	2	0	0	0	0.027433	1	7157	7157		45.972	1.5951	1	52461	+		20988	30689	17121	17144	23382	23382					0.05181421752104143
ITFAIGGALLA	11	Unmodified	_ITFAIGGALLA_					0	0	0		ENST00000579396.1_1_17:10599052-10600824:-|nuORF;ENSG00000133028|ENST00000255390|SCO1	ENST00000579396.1_1_17:10599052-10600824:-|nuORF	ENST00000579396.1_1_17:10599052-10600824:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2833862304688	2	523.815867	1045.61718	1.4702	0.00077012	3.9212	0.002054	5.3915	0.0028241	523.8178733336232	78.728	0.66264	78.728	78.374	79.037	0					28	15	2	0	0	0	0.025534	1	8021	8021		29.15	4.9468	1	1221600			20989	4190	17122	17145	23383	23383					0.0961979051680828
ITFEPLPM	8	Unmodified	_ITFEPLPM_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-MSMS	OvCa99_classI_Rep5	1	474.2519836425781	2	474.248972	946.48339	2.149	0.0010192	4.0611	0.001926	6.2102	0.0029452	474.2507745602916	82.842	0.89732	82.842	82.479	83.377	0					49	20	3	0	0	0	0.52992	1	8616	8616		74.517	0.54187	1	3081700	+		20990	17252	17123	17146	23384	23384					0.008008084195807896
ITFGRSRRKKR	11	Unmodified	_ITFGRSRRKKR_					0	0	0		ENST00000361762.3_2_4:30722797-30723229:+|nuORF	ENST00000361762.3_2_4:30722797-30723229:+|nuORF	ENST00000361762.3_2_4:30722797-30723229:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	468.95855712890625	3	468.960138	1403.85858	-5.0474	-0.002367	3.1302	0.0014679	-1.9173	-0.00089913	468.9614834162015	157.58	3.0388	156.04	155.07	158.11	-1.545					130	85	3	0	0	0	0.72472	1	15582	15582		19.263	1.4295	1	74235			20991	10802	17124	17147	23385	23385					0.17280838996430248
ITFINKVASLK	11	Unmodified	_ITFINKVASLK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.P12974Lfs*4|1|0.05|ENSG00000155657|chr2:178631204-178631205|-/GTACA|frameshift_variant;TTN|p.E11597Rfs*5|1|0.5|ENSG00000155657|chr2:178651954-178651954|A/-|frameshift_variant;TTN|p.R11195Efs*5|1|0.15|ENSG00000155657|chr2:178674318-178674318|A/-|frameshift_variant;TTN|p.E9011Nfs*14|1|0.03|ENSG00000155657|chr2:178711255-178711255|T/-|frameshift_variant;TTN|p.G8550Tfs*3|1|0.05|ENSG00000155657|chr2:178714032-178714059|ATTTGTTGTCACTTGTTAGCTCTTTTCC/-|frameshift_variant;TTN|p.S7694Qfs*32|1|0.04|ENSG00000155657|chr2:178719360-178719360|G/-|frameshift_variant;TTN|p.C7689Pfs*18|1|0.03|ENSG00000155657|chr2:178719373-178719374|CA/-|frameshift_variant;TTN|p.L7641Yfs*6|1|0.07|ENSG00000155657|chr2:178719621-178719621|T/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.2406311035156	3	411.923696	1232.74926	0.012153	5.0061E-06	-1.9844	-0.00081744	-1.9723	-0.00081243	411.922789710787	27.885	0.64911	27.885	27.691	28.34	0					24	12	4	0	0	0	0.025864	1	874	874		22.562	8.4756	1	107960			20992	5793;36288	17125	17148	23386	23386					0.14219395533746138
ITFKKKPKK	9	Unmodified	_ITFKKKPKK_					0	0	0			REV__ENST00000371485.7_1_10:95276799-95276850:+|nuORF	REV__ENST00000371485.7_1_10:95276799-95276850:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	559.3336791992188	2	559.376426	1116.7383	0.014847	8.305E-06	-4.1434	-0.0023177	-4.1286	-0.0023094	559.3756770026362	104.96	0.39242	104.39	104.22	104.61	-0.57639					12	7	2	0	0	0	0.027441	1	9729	9729		55.504	16.251	1	29302	+		20993	24982	17126	17149	23387	23387					0.18460037950126207
ITFKNYYT	8	Unmodified	_ITFKNYYT_					0	0	0		ENSG00000145029|ENST00000273598|NICN1;nc|ENSG00000145029|Q9BSH3-2|NICN1;ENST00000497742.6_1_3:49462781-49466699:-|nuORF;ENST00000422593.5_1_3:49462567-49466699:-|nuORF	ENSG00000145029|ENST00000273598|NICN1	ENSG00000145029|ENST00000273598|NICN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.8555908203125	2	525.26875	1048.52295	1.1585	0.00060852	-4.1041	-0.0021558	-2.9456	-0.0015473	525.26654487618	129.77	1.7309	128.32	127.1	128.83	-1.4565					43	34	2	0	0	0	0.028476	1	12305	12305		34.173	1.3601	1	72201			20994	5198	17127	17150	23388	23388					0.00062651694656779
ITGADSSQLLE	11	Unmodified	_ITGADSSQLLE_					0	0	0		nc|ENSG00000145242|P54756-3|EPHA5;nc|ENSG00000145242|P54756-2|EPHA5;ENSG00000145242|ENST00000613740|EPHA5;nc|ENSG00000145242|P54756|EPHA5	nc|ENSG00000145242|P54756-3|EPHA5	nc|ENSG00000145242|P54756-3|EPHA5	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.3214111328125	2	567.287868	1132.56118	-1.242	-0.00070458	-3.6789	-0.002087	-4.9209	-0.0027916	567.2848069959954	85.962	0.34874	83.741	83.486	83.835	-2.2204					8	6	2	0	0	0	0.02537	1	5066	5066		56.632	12.515	1	9311.4			20995	5211	17128	17151	23389	23389					0.0002049281868039543
ITGALQIYTD	10	Unmodified	_ITGALQIYTD_					0	0	0		ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.2929077148438	2	547.790047	1093.56554	-0.67026	-0.00036716	-1.5293	-0.00083776	-2.1996	-0.0012049	547.7877133178339	101.63	0.90259	99.365	99.02	99.923	-2.2665					32	17	4	0	0	0	0.026714	1	9102	9102		42.864	26.391	1	26814			20996	4433	17129	17152	23390	23390					0.022500020322468117
ITGALQIYTD	10	Unmodified	_ITGALQIYTD_					0	0	0		ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	547.790047	1093.56554	-0.78826	-0.0004318	-4.6758	-0.0025613	-5.464	-0.0029931	547.7871366466956	100.33	0.54565	99.495	99.311	99.856	-0.83052	0.035436	-0.0018889	NaN	42.864	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24476			20997	4433	17129	17152							0.022500020322468117
ITGALQIYTD	10	Unmodified	_ITGALQIYTD_					0	0	0		ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	547.790047	1093.56554	-1.4361	-0.00078668	-2.591	-0.0014193	-4.0271	-0.002206	547.7875381615667	101.12	0.51999	99.518	99.294	99.814	-1.6053	0.059166	0.00039507	NaN	42.864	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25965			20998	4433	17129	17152							0.022500020322468117
ITGEASVVLAF	11	Unmodified	_ITGEASVVLAF_					0	0	0			REV__ENSG00000063438|ENST00000684583|AHRR	REV__ENSG00000063438|ENST00000684583|AHRR	MULTI-SECPEP	OvCa9_classI_Rep2	2	553.8373413085938	2	553.808239	1105.60193	-0.32639	-0.00018075	0.044274	2.4519E-05	-0.28211	-0.00015624	553.8079537402913	102.35	1.5803	101.66	101.24	102.82	-0.68459					103	31	5	0	0	0	0.025829	1	9523	9523		47.657	23.138	1	238220	+		20999	16761	17130	17153	23391	23391					0.05334878928965736
ITGEASVVLAF	11	Unmodified	_ITGEASVVLAF_					0	0	0			REV__ENSG00000063438|ENST00000684583|AHRR	REV__ENSG00000063438|ENST00000684583|AHRR	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	553.808239	1105.60193	-0.28071	-0.00015546	0.03521	1.95E-05	-0.2455	-0.00013596	553.8079917645731	103.84	1.5188	101.72	101.28	102.8	-2.1192	0.08104	-7.8602E-05	NaN	47.657	96	28	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	301010	+		21000	16761	17130	17153							0.05334878928965736
ITGGRRKQK	9	Unmodified	_ITGGRRKQK_					0	0	0			REV__ENST00000434805.1_1_1:35816564-35817152:+|nuORF	REV__ENST00000434805.1_1_1:35816564-35817152:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.3321533203125	2	522.325257	1042.63596	-0.30896	-0.00016138	2.1414	0.0011185	1.8324	0.00095713	522.3261271923169	62.373	1.0588	62.373	62.081	63.14	0					31	25	2	0	0	0	0.027462	1	5545	5545		51.335	12.083	1	714950	+		21001	25761	17131	17154	23392	23392					0.11634764931227437
ITGIGWCRGP	10	Unmodified	_ITGIGWCRGP_					0	0	0			REV__FBN2|p.C1323Afs*9|1|0.05|ENSG00000138829|chr5:128335176-128335176|A/-|frameshift_variant	REV__FBN2|p.C1323Afs*9|1|0.05|ENSG00000138829|chr5:128335176-128335176|A/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.3432006835938	2	530.273844	1058.53313	1.2166	0.00064512	-0.26134	-0.00013858	0.95523	0.00050653	530.273725998663	146.1	0.54849	146.1	145.88	146.43	0					16	10	2	0	0	0	0.026688	1	17102	17102		40.778	14.085	1	90801	+		21002	19581	17132	17155	23393	23393					0.006209361482433451
ITGIRNFK	8	Unmodified	_ITGIRNFK_					0	0	0		nc|ENSG00000134249|Q9UKF2-2|ADAM30;ENSG00000134249|ENST00000369400|ADAM30	nc|ENSG00000134249|Q9UKF2-2|ADAM30	nc|ENSG00000134249|Q9UKF2-2|ADAM30	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.6027526855469	2	474.784902	947.55525	-0.32475	-0.00015419	0.19178	9.1054E-05	-0.13297	-6.3132E-05	474.7849430960733	48.422	0.78016	48.422	48.16	48.94	0					29	17	3	0	0	0	0.028476	1	3607	3607		23.042	0	1	422020			21003	4269	17133	17156	23394	23394					0.07937483888326824
ITGLLTVECI	10	Unmodified	_ITGLLTVECI_					0	0	0		tr|A0A553SNX2|A0A553SNX2_NIACIDUF503familyproteinOS=NialliacirculansOX=1397GN=CEQ21_25280PE=4SV=1	tr|A0A553SNX2|A0A553SNX2_NIACIDUF503familyproteinOS=NialliacirculansOX=1397GN=CEQ21_25280PE=4SV=1	tr|A0A553SNX2|A0A553SNX2_NIACIDUF503familyproteinOS=NialliacirculansOX=1397GN=CEQ21_25280PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.3250732421875	2	531.299193	1060.58383	0.022382	1.1892E-05	4.2077	0.0022356	4.2301	0.0022475	531.3013931840833	36.564	1.9446	33.671	32.946	34.891	-2.8925					106	38	4	0	0	0	0.026956	1	1354	1354		19.997	9.1312	1	729250			21004	33973	17134	17157	23395	23395					0.05596420682581993
ITGPIAKL	8	Unmodified	_ITGPIAKL_					0	0	0		ENSG00000188643|ENST00000368706|S100A16;ENST00000474991.1_1_1:153580012-153580192:-|nuORF	ENSG00000188643|ENST00000368706|S100A16	ENSG00000188643|ENST00000368706|S100A16	MULTI-MSMS	OvCa9_classI_Rep4_	4	406.7666320800781	2	406.765646	811.516739	0.63215	0.00025714	-0.82162	-0.00033421	-0.18947	-7.7072E-05	406.76514778270166	82.115	1.5044	79.432	79.156	80.66	-2.683					52	30	3	0	0	0	0.61436	1	6779	6779		60.972	6.2073	1	199520			21005	8487	17135	17158	23396	23396					0.10344178253808423
ITGSFFFASGL	11	Unmodified	_ITGSFFFASGL_					0	0	0			REV__ENSG00000182450|ENST00000422670|KCNK4	REV__ENSG00000182450|ENST00000422670|KCNK4	MULTI-MSMS	OvCa99_classI_Rep5	1	573.79345703125	2	573.795132	1145.57571	1.8591	0.0010667	-1.5485	-0.00088852	0.31058	0.00017821	573.7938010549349	115.47	0.97504	115.47	115.16	116.14	0					40	20	4	0	0	0	0.60323	1	13199	13199		44.377	2.9506	1	698420	+		21006	22294	17136	17159	23397	23397					0.008746097574885425
ITGSNVPTLCF	11	Unmodified	_ITGSNVPTLCF_					0	0	0		ENST00000414083.6_2_6:33289124-33290733:-|nuORF;ENST00000266000.10_2_6:33289121-33289671:-|nuORF	ENST00000414083.6_2_6:33289124-33290733:-|nuORF	ENST00000414083.6_2_6:33289124-33290733:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	575.8052978515625	2	576.291899	1150.56925	-1.8049	-0.0010401	-4.1914	-0.0024155	-5.9963	-0.0034556	576.2895517565366	68.454	0.64339	65.834	65.474	66.118	-2.6203					16	12	2	0	0	0	0.02567	1	5422	5422		71.877	33.071	1	9437.9			21007	11573	17137	17160	23398	23398					-1.6514655499122455E-05
ITGTADQSSH	10	Unmodified	_ITGTADQSSH_					0	0	0			REV__ENSG00000205277|ENST00000536621|MUC12	REV__ENSG00000205277|ENST00000536621|MUC12	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.28399658203125	2	508.735803	1015.45705	2.5806	0.0013129	2.0384	0.001037	4.6191	0.0023499	508.736872554853	75.896	0.86891	75.896	75.33	76.199	0					39	21	2	0	0	0	0.026577	1	7614	7614		49.536	3.5841	1	333660	+		21008	23208	17138	17161	23399	23399					-0.05005789218182599
ITHALKYN	8	Unmodified	_ITHALKYN_					0	0	0		tr|A0A553SUM8|A0A553SUM8_NIACIPhosphateABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=pstBPE=4SV=1	tr|A0A553SUM8|A0A553SUM8_NIACIPhosphateABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=pstBPE=4SV=1	tr|A0A553SUM8|A0A553SUM8_NIACIPhosphateABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=pstBPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.27667236328125	2	480.269084	958.523616	-1.4556	-0.0006991	-3.0115	-0.0014463	-4.4671	-0.0021454	480.2673843422004	50.923	1.1384	48.129	47.827	48.966	-2.794					50	22	3	0	0	0	0.028476	1	3283	3283		18.324	6.8134	1	119210			21009	34624	17139	17162	23400	23400					0.042694911343687636
ITHLMQLSH	9	Unmodified	_ITHLMQLSH_					0	0	0			REV__ENST00000545511.5_1_12:125609137-125626756:+|nuORF	REV__ENST00000545511.5_1_12:125609137-125626756:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	540.2899169921875	2	540.286951	1078.55935	1.9445	0.0010506	4.094	0.002212	6.0385	0.0032625	540.2887814095353	83.869	1.4647	83.869	83.377	84.841	0					88	34	4	0	0	0	0.22621	1	8710	8710		71.877	4.3838	1	7551900	+		21010	17074	17140	17163	23401	23401					0.02321205319708497
ITHMHNDFI	9	Unmodified	_ITHMHNDFI_					0	0	0			REV__tr|A0A7D6VSD0|A0A7D6VSD0_9CLOTHistidinol-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_05935PE=3SV=1	REV__tr|A0A7D6VSD0|A0A7D6VSD0_9CLOTHistidinol-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_05935PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.8048095703125	2	564.268758	1126.52296	0.17268	9.7439E-05	-0.96957	-0.0005471	-0.79689	-0.00044966	564.2684549066339	60.263	0.60677	60.263	60.039	60.646	0					22	14	2	0	0	0	0.027462	1	5286	5286		30.504	15.639	1	214510	+		21011	31488	17141	17164	23402	23402					-0.035236715769769944
ITHMHNDFI	9	Unmodified	_ITHMHNDFI_					0	0	0			REV__tr|A0A7D6VSD0|A0A7D6VSD0_9CLOTHistidinol-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_05935PE=3SV=1	REV__tr|A0A7D6VSD0|A0A7D6VSD0_9CLOTHistidinol-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_05935PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	564.268758	1126.52296	1.1746	0.00066278	-3.1633	-0.0017849	-1.9887	-0.0011222	564.2665444682933	63.963	0.6821	60.488	60.298	60.98	-3.475	0.11217	-0.0016004	NaN	23.042	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31673	+		21012	31488	17141	17164							-0.035236715769769944
ITHTTHRSS	9	Unmodified	_ITHTTHRSS_					0	0	0		ENST00000520119.1_1_14:106631100-106631440:-|nuORF	ENST00000520119.1_1_14:106631100-106631440:-|nuORF	ENST00000520119.1_1_14:106631100-106631440:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.3113403320312	2	520.267604	1038.52066	-0.89556	-0.00046593	-1.8194	-0.00094659	-2.715	-0.0014125	520.2666390259958	85.018	0.78543	82.798	82.299	83.084	-2.2204					37	15	3	0	0	0	0.027448	1	4999	4999		35.618	7.736	1	389490			21013	13098	17142	17165	23403	23403					0.002936160095487139
ITIAQLVSL	9	Unmodified	_ITIAQLVSL_					0	0	0			REV__nc|ENSG00000235818|Q8TDU5|VN1R17P	REV__nc|ENSG00000235818|Q8TDU5|VN1R17P	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.2806091308594	2	479.302593	956.590633	0.84691	0.00040592	-1.4198	-0.00068049	-0.57285	-0.00027457	479.30170362955846	96.621	0.59995	94.195	93.964	94.564	-2.4256					18	11	2	0	0	0	0.027425	1	8552	8552		51.193	0	1	62748	+		21014	29151	17143	17166	23404	23404					0.11060101625469088
ITICREQE	8	Unmodified	_ITICREQE_					0	0	0			REV__ENST00000594885.1_1_19:3984132-3985378:-|nuORF	REV__ENST00000594885.1_1_19:3984132-3985378:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	496.2478942871094	2	496.247492	990.48043	-1.2109	-0.0006009	2.2161	0.0010997	1.0052	0.00049884	496.2483902141358	43.675	0.72269	43.675	43.143	43.866	0					37	16	4	0	0	0	0.37357	1	2915	2915		93.195	10.955	1	2043900	+		21015	21296	17144	17167	23405	23405					-0.015190667052138451
ITIDQIDLL	9	Unmodified	_ITIDQIDLL_					0	0	0			REV__tr|A0A553STS6|A0A553STS6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_05635PE=4SV=1	REV__tr|A0A553STS6|A0A553STS6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_05635PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.8312377929688	2	522.30279	1042.59103	0.25459	0.00013297	-0.34146	-0.00017835	-0.086874	-4.5375E-05	522.3018393883508	97.591	1.6733	95.213	94.758	96.431	-2.3786					55	32	4	0	0	0	0.027462	1	8669	8669		54.776	0	1	74988	+		21016	31005	17145	17168	23406	23406					0.0714347655466554
ITIDQIDLL	9	Unmodified	_ITIDQIDLL_					0	0	0			REV__tr|A0A553STS6|A0A553STS6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_05635PE=4SV=1	REV__tr|A0A553STS6|A0A553STS6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_05635PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	522.30279	1042.59103	0.49863	0.00026044	-0.7395	-0.00038624	-0.24087	-0.00012581	522.3016658891682	96.215	1.4825	95.187	94.714	96.196	-1.0281	-0.0022182	-0.00058749	NaN	54.776	49	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82848	+		21017	31005	17145	17168							0.0714347655466554
ITIDQIDLL	9	Unmodified	_ITIDQIDLL_					0	0	0			REV__tr|A0A553STS6|A0A553STS6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_05635PE=4SV=1	REV__tr|A0A553STS6|A0A553STS6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_05635PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	522.30279	1042.59103	-0.8003	-0.000418	0.64281	0.00033574	-0.15749	-8.2255E-05	522.3024585212188	96.997	1.1689	95.168	94.724	95.892	-1.8286	-0.021244	0.00085648	NaN	54.776	40	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87331	+		21018	31005	17145	17168							0.0714347655466554
ITIEMEATD	9	Unmodified	_ITIEMEATD_					0	0	0		tr|A0A553SLP1|A0A553SLP1_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_21020PE=3SV=1	tr|A0A553SLP1|A0A553SLP1_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_21020PE=3SV=1	tr|A0A553SLP1|A0A553SLP1_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_21020PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	510.8436279296875	2	511.739165	1021.46378	1.5782	0.00080761	-0.57671	-0.00029512	1.0015	0.00051249	511.7385654262736	124.87	0.73274	123.82	123.53	124.26	-1.0519					31	13	3	0	0	0	0.027462	1	9666	9666		37.159	0	1	58348			21019	33747	17146	17169	23407	23407					-0.04609612381818806
ITIFKRKR	8	Unmodified	_ITIFKRKR_					0	0	0		tr|A0A7D7A1X1|A0A7D7A1X1_9CLOTPolysaccharidebiosynthesisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06090PE=4SV=1	tr|A0A7D7A1X1|A0A7D7A1X1_9CLOTPolysaccharidebiosynthesisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06090PE=4SV=1	tr|A0A7D7A1X1|A0A7D7A1X1_9CLOTPolysaccharidebiosynthesisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06090PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.327880859375	2	531.350743	1060.68693	2.4391	0.001296	-2.2338	-0.0011869	0.20528	0.00010908	531.3495481588662	80.296	0.12015	80.296	80.234	80.354	0					4	2	2	0	0	0	0.028476	1	8231	8231		24.203	1.1603	1	93423			21020	36051	17147	17170	23408	23408					0.15901713976086285
ITIIRGTEK	9	Unmodified	_ITIIRGTEK_					0	0	0			REV__tr|A0A553SJ56|A0A553SJ56_NIACITransketolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_16145PE=4SV=1	REV__tr|A0A553SJ56|A0A553SJ56_NIACITransketolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_16145PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	516.27880859375	2	515.816399	1029.61824	-0.32398	-0.00016712	0.11755	6.0635E-05	-0.20643	-0.00010648	515.8163968168761	67.267	0.84168	64.606	64.298	65.139	-2.661					41	16	3	0	0	0	0.027462	1	5285	5285		44.117	0	1	69486	+		21021	29967	17148	17171	23409	23409					0.10462004885698661
ITIIRGTEK	9	Unmodified	_ITIIRGTEK_					0	0	0			REV__tr|A0A553SJ56|A0A553SJ56_NIACITransketolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_16145PE=4SV=1	REV__tr|A0A553SJ56|A0A553SJ56_NIACITransketolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_16145PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.2810668945312	2	515.816399	1029.61824	0.58345	0.00030095	-1.0095	-0.00052073	-0.42607	-0.00021977	515.8158767223218	68.137	0.88248	64.647	64.43	65.312	-3.4902					38	17	3	0	0	0	0.027462	1	5075	5075		42.396	20.436	1	120280	+		21022	29967	17148	17171	23410	23410					0.10462004885698661
ITIKRLAKP	9	Unmodified	_ITIKRLAKP_					0	0	0		tr|A0A553STT8|A0A553STT8_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05560PE=4SV=1	tr|A0A553STT8|A0A553STT8_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05560PE=4SV=1	tr|A0A553STT8|A0A553STT8_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05560PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.8463745117188	2	520.352951	1038.69135	1.7717	0.00092192	0.72262	0.00037602	2.4943	0.0012979	520.3532951330524	95.121	0.42273	95.121	94.861	95.284	0					13	9	2	0	0	0	0.027462	1	10339	10339		25.574	6.2141	1	238670			21023	34533	17149	17172	23411	23411					0.17355178398975113
ITINLLHRKT	10	Unmodified	_ITINLLHRKT_					0	0	0		HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|66|1|sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|66|1|sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|66|1|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	403.5867614746094	3	403.587307	1207.74009	2.5756	0.0010395	-2.3998	-0.00096853	0.1758	7.0949E-05	403.5861980627301	62.538	1.4885	59.504	59.214	60.703	-3.0339					41	29	3	0	0	0	0.80369	1	2275	2275		18.531	1.8137	1	42810			21024	14409	17150	17173	23412	23412					0.14453046968083072
ITIPRGTVLV	10	Unmodified	_ITIPRGTVLV_					0	0	0			REV__tr|A0A7D6VPU8|A0A7D6VPU8_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20450PE=4SV=1	REV__tr|A0A7D6VPU8|A0A7D6VPU8_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20450PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	534.2588500976562	2	534.842416	1067.67028	1.0078	0.000539	-1.3358	-0.00071444	-0.32802	-0.00017544	534.8416013372163	107.72	1.2954	106.48	106.17	107.46	-1.2459					48	24	3	0	0	0	0.026714	1	7699	7699		42.864	3.6114	1	104700	+		21025	31279	17151	17174	23413	23413					0.1391516829946795
ITIPRRLPD	9	Unmodified	_ITIPRRLPD_					0	0	0			REV__ENSG00000147912|ENST00000432825|FBXO10	REV__ENSG00000147912|ENST00000432825|FBXO10	MULTI-MSMS	OvCa9_classI_Rep2	2	540.83154296875	2	540.82984	1079.64513	-0.46856	-0.00025341	3.3565	0.0018153	2.8879	0.0015619	540.8317360682152	123.45	3.5017	123.21	122.89	126.4	-0.23193					177	70	5	0	0	0	0.49652	1	12027	12027		42.864	0.46813	1	7794400	+		21026	20088	17152	17175	23414	23414					0.10849113496897189
ITIPRRLPD	9	Unmodified	_ITIPRRLPD_					0	0	0			REV__ENSG00000147912|ENST00000432825|FBXO10	REV__ENSG00000147912|ENST00000432825|FBXO10	MULTI-MSMS	OvCa9_classI_Rep3	3	540.830810546875	2	540.82984	1079.64513	2.013	0.0010887	0.75549	0.00040859	2.7684	0.0014973	540.8302826822948	124.41	3.5435	123.37	123.03	126.57	-1.0377					194	67	5	0	0	0	0.60342	1	9757	9757		31.53	3.6476	1	8697600	+		21027	20088	17152	17175	23415	23415					0.10849113496897189
ITIVEEKDI	9	Unmodified	_ITIVEEKDI_					0	0	0			REV__tr|A0A7D7A767|A0A7D7A767_9CLOTPadRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_16230PE=4SV=1	REV__tr|A0A7D7A767|A0A7D7A767_9CLOTPadRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_16230PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	530.2994995117188	2	530.300247	1058.58594	-0.044695	-2.3702E-05	-2.7688	-0.0014683	-2.8135	-0.001492	530.2986629314781	30.396	1.3311	27.686	27.458	28.789	-2.7097					67	26	4	0	0	0	0.63422	1	862	862		27.882	2.3082	1	398640	+		21028	32667	17153	17176	23416	23416					0.058991726920339715
ITIYADPDVPE	11	Unmodified	_ITIYADPDVPE_					0	0	0		chr19:32731883-32738856|104|28.57|0.86|5.06|+|ENST00000647536|TDRD12,TDRD12;chr19:32798435-32800167|100|13.01|0.19|6.13|+|ENST00000647536|TDRD12,TDRD12;chr19:32821139-32826098|165|14.05|0.47|4.9|+|ENST00000647536|TDRD12,TDRD12;chr19:32818157-32821033|152|13.22|0.53|4.64|+|ENST00000647536|TDRD12,TDRD12;chr19:32815620-32818089|135|13.1|0.49|4.75|+|ENST00000647536|TDRD12,TDRD12;chr19:32813776-32815448|139|16.72|0.53|4.98|+|ENST00000647536|TDRD12,TDRD12;chr19:32811420-32813684|131|15.54|0.45|5.12|+|ENST00000647536|TDRD12,TDRD12;chr19:32810277-32811210|156|14.54|0.46|4.99|+|ENST00000647536|TDRD12,TDRD12;chr19:32807648-32810093|114|14.91|0.34|5.48|+|ENST00000647536|TDRD12,TDRD12;chr19:32801873-32802656|139|14.81|0.36|5.35|+|ENST00000647536|TDRD12,TDRD12;chr19:32800772-32801756|126|14.63|0.37|5.31|+|ENST00000647536|TDRD12,TDRD12;chr19:32802789-32802922|108|15.69|0.41|5.25|+|ENST00000647536|TDRD12,TDRD12;chr19:32797891-32798308|119|12.01|0.22|5.75|+|ENST00000647536|TDRD12,TDRD12;chr19:32794813-32797735|98|12.42|0.27|5.5|+|ENST00000647536|TDRD12,TDRD12;chr19:32791068-32794628|119|12.08|0.3|5.31|+|ENST00000647536|TDRD12,TDRD12;chr19:32790591-32790964|124|10.79|0.19|5.84|+|ENST00000647536|TDRD12,TDRD12;chr19:32749869-32755992|122|31.96|0.99|5.02|+|ENST00000647536|TDRD12,TDRD12;chr19:32748531-32749784|99|29.09|0.97|4.91|+|ENST00000647536|TDRD12,TDRD12;chr19:32738992-32742781|92|29.05|0.94|4.95|+|ENST00000647536|TDRD12,TDRD12;chr19:32800358-32800644|113|15.08|0.33|5.5|+|ENST00000647536|TDRD12,TDRD12;ENSG00000173809|ENST00000639142|TDRD12;nc|ENSG00000173809|Q587J7-2|TDRD12;chr19:32803142-32807549|130|16.52|0.36|5.5|+|ENST00000444215|TDRD12,TDRD12;nc|ENSG00000173809|Q587J7|TDRD12;chr19:32790591-32790674|86|10.87|0.22|5.6|+|ENST00000421545|TDRD12,TDRD12	chr19:32731883-32738856|104|28.57|0.86|5.06|+|ENST00000647536|TDRD12,TDRD12	chr19:32731883-32738856|104|28.57|0.86|5.06|+|ENST00000647536|TDRD12,TDRD12	MULTI-MSMS	OvCa99_classI_Rep5	1	617.3099975585938	2	616.805894	1231.59723	1.57	0.00096837	0.18272	0.0001127	1.7527	0.0010811	616.806231797573	119.92	0.56779	119.92	119.62	120.18	0					44	12	6	0	0	0	0.58572	1	13766	13766		45.972	0.95004	1	477830			21029	411	17154	17177	23417	23417					-0.009300500044673754
ITKAYVKTR	9	Unmodified	_ITKAYVKTR_					0	0	0			REV__COX6A1-CAPZA1|1|fusion	REV__COX6A1-CAPZA1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	540.32958984375	2	540.332216	1078.64988	-1.2676	-0.00068491	-2.6392	-0.001426	-3.9067	-0.0021109	540.3307152267141	139.22	4.0818	138.16	137	141.08	-1.0595					200	82	3	0	0	0	0.65371	1	11473	11473		25.574	2.5316	1	55828	+		21030	16229	17155	17178	23418	23418					0.1136999763964468
ITKFPHTVV	9	Unmodified	_ITKFPHTVV_					0	0	0			REV__ENSG00000165168|ENST00000378588|CYBB	REV__ENSG00000165168|ENST00000378588|CYBB	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.8772583007812	2	521.30821	1040.60187	2.1871	0.0011401	-2.196	-0.0011448	-0.0089058	-4.6426E-06	521.3065757487716	97.974	0.5125	97.974	97.566	98.079	0					17	11	2	0	0	0	0.027462	1	10732	10732		38.806	8.4884	1	229670	+		21031	21064	17156	17179	23419	23419					0.08318923719616578
ITKGFPVL	8	Unmodified	_ITKGFPVL_					0	0	0		nc|ENSG00000112339|Q9Y450-4|HBS1L;ENSG00000112339|ENST00000367837|HBS1L;ENST00000527005.5_1_6:135286419-135303731:-|nuORF	nc|ENSG00000112339|Q9Y450-4|HBS1L	nc|ENSG00000112339|Q9Y450-4|HBS1L	MULTI-MSMS	OvCa9_classI_Rep4_	4	437.7735595703125	2	437.773471	873.53239	0.82511	0.00036121	-0.71939	-0.00031493	0.10572	4.628E-05	437.77302640897346	114.15	1.3423	112.71	112.43	113.77	-1.4461					66	25	4	0	0	0	0.56113	1	10606	10606		71.378	0.082209	1	209190			21032	2900	17157	17180	23420	23420					0.09056464770844741
ITKHKRKE	8	Unmodified	_ITKHKRKE_					0	0	0		TEX10|p.E856Gfs*24|1|0.03|ENSG00000136891|chr9:100303741-100303742|-/TC|frameshift_variant;nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10	TEX10|p.E856Gfs*24|1|0.03|ENSG00000136891|chr9:100303741-100303742|-/TC|frameshift_variant	TEX10|p.E856Gfs*24|1|0.03|ENSG00000136891|chr9:100303741-100303742|-/TC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3036499023438	2	520.322183	1038.62981	-1.4008	-0.00072888	1.97	0.001025	0.56917	0.00029615	520.3229044727021	43.284	0.47325	40.277	40.063	40.536	-3.0074					14	8	2	0	0	0	0.028476	1	2089	2089		33.516	0	1	20380			21033	4530	17158	17181	23421	23421					0.11204246699708165
ITKIKVKR	8	Unmodified	_ITKIKVKR_					0	0	0			REV__ENST00000322723.8_1_2:232321811-232322410:-|nuORF	REV__ENST00000322723.8_1_2:232321811-232322410:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.3223571777344	2	493.347669	984.680785	0.41512	0.0002048	-0.72361	-0.00035699	-0.30849	-0.00015219	493.3473336148995	78.38	0.15247	76.64	76.512	76.664	-1.7398					4	2	2	0	0	0	0.028476	1	6549	6549		31.955	11.473	1	19595	+		21034	24460	17159	17182	23422	23422					0.1878319574454963
ITKIVTDIA	9	Unmodified	_ITKIVTDIA_					0	0	0			REV__tr|A0A553SGA5|A0A553SGA5_NIACIPTSsorbitoltransportersubunitIIBOS=NialliacirculansOX=1397GN=CEQ21_10485PE=4SV=1	REV__tr|A0A553SGA5|A0A553SGA5_NIACIPTSsorbitoltransportersubunitIIBOS=NialliacirculansOX=1397GN=CEQ21_10485PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	487.2820129394531	2	487.30005	972.585547	-1.0225	-0.00049826	-0.66712	-0.00032509	-1.6896	-0.00082335	487.29997051954155	97.506	0.54787	95.746	95.414	95.962	-1.7595					18	10	3	0	0	0	0.027462	1	6490	6490		60.118	10.677	1	141020	+		21035	29677	17160	17183	23423	23423					0.09815797762837519
ITKKFCCE	8	Unmodified	_ITKKFCCE_					0	0	0		ENSG00000174145|ENST00000309447|NWD2	ENSG00000174145|ENST00000309447|NWD2	ENSG00000174145|ENST00000309447|NWD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.79461669921875	2	486.238081	970.461609	-0.48868	-0.00023762	0.43313	0.0002106	-0.055552	-2.7011E-05	486.2381056597789	48.475	0.91514	48.475	48.204	49.119	0					45	20	3	0	0	0	0.028476	1	3640	3640		30.504	0	1	1630700			21036	7442	17161	17184	23424	23424					-0.02480319600635994
ITKKITAA	8	Unmodified	_ITKKITAA_					0	0	0			REV__tr|A0A553SFF3|A0A553SFF3_NIACIGlycosyltransferasefamily2proteinOS=NialliacirculansOX=1397GN=CEQ21_08770PE=3SV=1	REV__tr|A0A553SFF3|A0A553SFF3_NIACIGlycosyltransferasefamily2proteinOS=NialliacirculansOX=1397GN=CEQ21_08770PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	423.275146484375	2	423.276378	844.538203	-1.0746	-0.00045487	-1.9263	-0.00081535	-3.0009	-0.0012702	423.27545611036373	140.26	1.6211	140.03	139.45	141.07	-0.22696					84	32	4	0	0	0	0.73013	1	14092	14092		7.6903	3.0085	1	166850	+		21037	29572	17162	17185	23425	23425					0.10971563282498664
ITKKQAFII	9	Unmodified	_ITKKQAFII_					0	0	0		tr|A0A553ST72|A0A553ST72_NIACIYndJ-likeproteinOS=NialliacirculansOX=1397GN=CEQ21_04470PE=4SV=1	tr|A0A553ST72|A0A553ST72_NIACIYndJ-likeproteinOS=NialliacirculansOX=1397GN=CEQ21_04470PE=4SV=1	tr|A0A553ST72|A0A553ST72_NIACIYndJ-likeproteinOS=NialliacirculansOX=1397GN=CEQ21_04470PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	531.3402099609375	2	531.33951	1060.66447	0.76702	0.00040755	1.4986	0.00079626	2.2656	0.0012038	531.3402607079814	140.29	2.3131	140.29	139.97	142.29	0					124	46	5	0	0	0	0.51865	1	16363	16363		40.778	0	1	3646000			21038	34465	17163	17186	23426	23426					0.13656069787793967
ITKLAPIMV	9	Unmodified	_ITKLAPIMV_					0	0	0			REV__nc|ENSG00000197444|Q9ULD0-3|OGDHL	REV__nc|ENSG00000197444|Q9ULD0-3|OGDHL	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.32183837890625	2	493.309364	984.604174	0.55598	0.00027427	-2.599	-0.0012821	-2.0431	-0.0010079	493.3082198337101	78.684	0.34146	76.944	76.855	77.196	-1.7398					16	6	3	0	0	0	0.027441	1	6615	6615		40.778	0	1	60631	+		21039	22926	17164	17187	23427	23427					0.11125636133056105
ITKLAPIMV	9	Unmodified	_ITKLAPIMV_					0	0	0			REV__nc|ENSG00000197444|Q9ULD0-3|OGDHL	REV__nc|ENSG00000197444|Q9ULD0-3|OGDHL	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3233337402344	2	493.309364	984.604174	-0.38512	-0.00018998	2.9063	0.0014337	2.5212	0.0012437	493.3109053433464	78.83	0.14527	76.49	76.417	76.562	-2.3399					4	2	2	0	0	0	0.027448	1	4217	4217		35.618	3.6634	1	50984	+		21040	22926	17164	17187	23428	23428					0.11125636133056105
ITKLAPIMV	9	Unmodified	_ITKLAPIMV_					0	0	0			REV__nc|ENSG00000197444|Q9ULD0-3|OGDHL	REV__nc|ENSG00000197444|Q9ULD0-3|OGDHL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.3244934082031	2	493.309364	984.604174	-0.13736	-6.7762E-05	-1.4689	-0.00072463	-1.6063	-0.00079239	493.30923727886324	79.571	0.18713	76.82	76.657	76.844	-2.7514					5	3	2	0	0	0	0.027426	1	6445	6445		35.618	8.9254	1	57228	+		21041	22926	17164	17187	23429	23429					0.11125636133056105
ITKNDLYPLW	10	Unmodified	_ITKNDLYPLW_					0	0	0		tr|A0A553SQA5|A0A553SQA5_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_24740PE=4SV=1	tr|A0A553SQA5|A0A553SQA5_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_24740PE=4SV=1	tr|A0A553SQA5|A0A553SQA5_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_24740PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	631.8617553710938	2	631.842613	1261.67067	-0.63816	-0.00040322	-3.317	-0.0020958	-3.9551	-0.002499	631.8404974378425	92.297	0.76009	89.754	89.567	90.327	-2.5425					28	14	3	0	0	0	0.02676	1	8005	8005		41.427	12.257	1	69970			21042	34137	17165	17188	23430	23430					0.050305432286450014
ITKNDLYPLW	10	Unmodified	_ITKNDLYPLW_					0	0	0		tr|A0A553SQA5|A0A553SQA5_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_24740PE=4SV=1	tr|A0A553SQA5|A0A553SQA5_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_24740PE=4SV=1	tr|A0A553SQA5|A0A553SQA5_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_24740PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	631.842613	1261.67067	3.2347	0.0020438	-4.6645	-0.0029472	-1.4298	-0.00090342	631.8394774554307	90.089	0.53372	90.089	89.848	90.382	0	0.22338	-0.0011016	NaN	41.427	22	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	502710			21043	34137	17165	17188							0.050305432286450014
ITKNDLYPLW	10	Unmodified	_ITKNDLYPLW_					0	0	0		tr|A0A553SQA5|A0A553SQA5_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_24740PE=4SV=1	tr|A0A553SQA5|A0A553SQA5_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_24740PE=4SV=1	tr|A0A553SQA5|A0A553SQA5_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_24740PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	631.842613	1261.67067	0.49265	0.00031128	-7.4847	-0.0047292	-6.992	-0.0044179	631.8393507581258	91.124	0.73834	89.889	89.587	90.326	-1.2355	0.023663	-0.0046655	NaN	41.427	38	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60749			21044	34137	17165	17188							0.050305432286450014
ITKNDPNSI	9	Unmodified	_ITKNDPNSI_					0	0	0			REV__ENSG00000205693|ENST00000381273|MANSC4	REV__ENSG00000205693|ENST00000381273|MANSC4	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.7969970703125	2	501.266739	1000.51892	-0.35306	-0.00017698	0.90986	0.00045608	0.5568	0.00027911	501.2670742527357	69.482	0.86241	69.482	69.268	70.13	0					30	20	2	0	0	0	0.027462	1	6692	6692		39.253	2.0937	1	2550600	+		21045	23224	17166	17189	23431	23431					0.01868562200957058
ITKNIKEGPVI	11	Unmodified	_ITKNIKEGPVI_					0	0	0			REV__tr|A0A553STI6|A0A553STI6_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_04950PE=3SV=1	REV__tr|A0A553STI6|A0A553STI6_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_04950PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3696899414062	2	606.371538	1210.72852	-2.264	-0.0013728	-1.0272	-0.00062285	-3.2912	-0.0019957	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.71789	2	12511	12393;12511		23.523	1.6355	1	205770	+		21046	30968	17167	17190	23432;23433	23433					0.13158805154080255
ITKPPAKDKAV	11	Unmodified	_ITKPPAKDKAV_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3560791015625	2	584.358431	1166.70231	-1.7162	-0.0010029	-1.68	-0.00098173	-3.3962	-0.0019846	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.72064	1	14186	14186		22.58	0.61977	1	833330			21047	7345	17168	17191	23434	23434					0.12562535982578993
ITKPRQPQL	9	Unmodified	_ITKPRQPQL_					0	0	0			REV__ENST00000605810.1_1_3:70174691-70175321:-|nuORF	REV__ENST00000605810.1_1_3:70174691-70175321:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	540.831298828125	2	540.82984	1079.64513	2.013	0.0010887	0.75549	0.00040859	2.7684	0.0014973	540.8302826822948	124.41	3.5435	123.37	123.03	126.57	-1.0377					194	67	5	0	0	0	0.46356	1	9725	9725		45.972	5.1941	1	8697600	+		21048	28069	17169	17192	23435	23435					0.10849113496897189
ITKQVKNPK	9	Unmodified	_ITKQVKNPK_					0	0	0		ENSG00000165694|ENST00000298542|FRMD7	ENSG00000165694|ENST00000298542|FRMD7	ENSG00000165694|ENST00000298542|FRMD7	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3460693359375	2	528.332216	1054.64988	2.8357	0.0014982	-1.7582	-0.00092893	1.0775	0.00056926	528.3316020701357	88.023	0.20662	88.023	87.838	88.044	0					6	4	2	0	0	0	0.027462	1	9334	9334		30.504	6.3009	1	257990			21049	6592	17170	17193	23436	23436					0.12473997639654044
ITKRQITQN	9	Unmodified	_ITKRQITQN_					0	0	0		ENST00000561481.1_1_16:74497146-74501752:-|nuORF;ENST00000561481.1_1_16:74497249-74497312:-|nuORF;ENST00000422840.6_1_16:74496491-74497312:-|nuORF;ENST00000563646.1_1_16:74495883-74497335:-|nuORF;ENST00000562090.5_1_16:74487067-74506519:-|nuORF;ENSG00000090863|ENST00000422840|GLG1;nc|ENSG00000090863|Q92896-3|GLG1;nc|ENSG00000090863|Q92896-2|GLG1	ENST00000561481.1_1_16:74497146-74501752:-|nuORF	ENST00000561481.1_1_16:74497146-74501752:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.7926025390625	2	551.32238	1100.63021	0.88434	0.00048756	1.0887	0.00060022	1.973	0.0010878	551.3229197036079	67.354	1.1811	63.863	63.393	64.574	-3.4902					33	23	3	0	0	0	0.027446	1	4983	4983		60.118	0	1	169780			21050	13755	17171	17194	23437	23437					0.08391621628902612
ITKSALPIS	9	Unmodified	_ITKSALPIS_					0	0	0			REV__tr|A0A553SUB0|A0A553SUB0_NIACIMolybdenumtransportsystempermeaseOS=NialliacirculansOX=1397GN=modBPE=3SV=1	REV__tr|A0A553SUB0|A0A553SUB0_NIACIMolybdenumtransportsystempermeaseOS=NialliacirculansOX=1397GN=modBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	465.28497314453125	2	465.286943	928.559333	-2.7433	-0.0012764	-0.30458	-0.00014172	-3.0479	-0.0014181	465.28670210862947	142.67	1.0374	141.66	141.38	142.42	-1.0106					57	20	4	0	0	0	0.68424	1	11847	11847		21.96	4.5949	1	145060	+		21051	31057	17172	17195	23438	23438					0.09219528591370363
ITKVIIPEKS	10	Unmodified	_ITKVIIPEKS_					0	0	0		ENSG00000135678|ENST00000551568|CPM	ENSG00000135678|ENST00000551568|CPM	ENSG00000135678|ENST00000551568|CPM	MULTI-SECPEP	OvCa9_classI_Rep2	2	564.80615234375	2	564.355357	1126.69616	-0.23691	-0.0001337	-0.59075	-0.00033339	-0.82765	-0.00046709	564.3549670983876	94.649	0.68706	93.55	93.361	94.049	-1.0995					27	13	3	0	0	0	0.026931	1	8466	8466		12.207	0	1	34609			21052	4399	17173	17196	23439	23439					0.13788017751085135
ITKVLPTN	8	Unmodified	_ITKVLPTN_					0	0	0			REV__ENSG00000125999|ENST00000253354|BPIFB1	REV__ENSG00000125999|ENST00000253354|BPIFB1	MULTI-MSMS	OvCa9_classI_Rep2	2	443.2727355957031	2	443.273835	884.533118	0.83529	0.00037026	-3.8589	-0.0017105	-3.0236	-0.0013403	443.27205335230417	138.39	1.523	138.16	137.68	139.21	-0.22696					79	30	3	0	0	0	0.745	1	13860	13860		29.15	1.2673	1	138730	+		21053	18765	17174	17197	23440	23440					0.08623259419880469
ITKVYILQ	8	Unmodified	_ITKVYILQ_					0	0	0		ENST00000482466.5_1_3:37190494-37216062:-|nuORF	ENST00000482466.5_1_3:37190494-37216062:-|nuORF	ENST00000482466.5_1_3:37190494-37216062:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	489.3069763183594	2	489.305136	976.595718	-0.032848	-1.6073E-05	0.12124	5.9323E-05	0.088392	4.3251E-05	489.3049462753751	70.702	0.70302	70.702	70.328	71.031	0					30	17	3	0	0	0	0.35821	1	6799	6799		96.19	2.995	1	1093600			21054	12573	17175	17198	23441	23441					0.10648405488097978
ITKWKNAI	8	Unmodified	_ITKWKNAI_					0	0	0			REV__ENSG00000111670|ENST00000299314|GNPTAB	REV__ENSG00000111670|ENST00000299314|GNPTAB	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.28131103515625	2	487.295102	972.575651	0.45148	0.00022001	3.9039	0.0019023	4.3553	0.0021223	487.2962041326882	96.819	0.58748	95.861	95.58	96.167	-0.95857					26	11	3	0	0	0	0.028476	1	8769	8769		44.117	0	1	50817	+		21055	18045	17176	17199	23442	23442					0.08826654548113311
ITKYPLLISRI	11	Unmodified	_ITKYPLLISRI_					0	0	0		YY1AP1-ARHGEF2|2|fusion;YY1AP1-ARHGEF2|3|fusion;YY1AP1-ARHGEF2|1|fusion;YY1AP1-ARHGEF2|14|fusion;YY1AP1-ARHGEF2|13|fusion;YY1AP1-ARHGEF2|8|fusion;YY1AP1-ARHGEF2|7|fusion;YY1AP1-ARHGEF2|16|fusion;YY1AP1-ARHGEF2|15|fusion;YY1AP1-ARHGEF2|4|fusion;YY1AP1-ARHGEF2|6|fusion;YY1AP1-ARHGEF2|5|fusion;YY1AP1-ARHGEF2|12|fusion;YY1AP1-ARHGEF2|11|fusion;YY1AP1-ARHGEF2|10|fusion;YY1AP1-ARHGEF2|9|fusion;ENSG00000116584|ENST00000361247|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;nc|ENSG00000116584|Q92974-3|ARHGEF2;ARHGEF2|p.D414Lfs*135|1|0.04|ENSG00000116584|chr1:155961889-155961890|-/GTAG|frameshift_variant;ENST00000474428.6_1_1:155922555-155932010:-|nuORF;ENST00000608543.1_1_1:155931890-155932010:-|nuORF;ARHGEF2-GON4L|1|fusion;ARHGEF2-GON4L|2|fusion;ARHGEF2-GON4L|3|fusion	YY1AP1-ARHGEF2|2|fusion;ARHGEF2-GON4L|1|fusion	YY1AP1-ARHGEF2|2|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	439.61358642578125	3	439.614862	1315.82276	1.9092	0.00083931	-3.6455	-0.0016026	-1.7363	-0.00076331	439.61298819523574	62.611	0.99952	59.577	59.214	60.214	-3.0339					41	19	3	0	0	0	0.72483	1	2287	2287		17.833	2.5	1	32046			21056	36311;112	17177	17200	23443	23443					0.17747943976223723
ITLAGYCDCFA	11	Unmodified	_ITLAGYCDCFA_					0	0	0		ENSG00000132749|ENST00000255087|TESMIN	ENSG00000132749|ENST00000255087|TESMIN	ENSG00000132749|ENST00000255087|TESMIN	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.3026123046875	2	588.756835	1175.49912	1.1025	0.00064911	0.93489	0.00055042	2.0374	0.0011995	589.2592505474685	131.4	0.61514	131.4	130.91	131.53	0					15	12	2	0	0	0	0.025909	1	15227	15227		19.997	0	1	60921			21057	4170	17178	17201	23444	23444					-0.0816127312568824
ITLAHAEMHHI	11	Unmodified	_ITLAHAEMHHI_					0	0	0			REV__ENST00000518114.1_1_2:190619886-190627438:-|nuORF	REV__ENST00000518114.1_1_2:190619886-190627438:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	424.89019775390625	3	424.888768	1271.64448	-0.11144	-4.7351E-05	2.6682	0.0011337	2.5568	0.0010863	424.89005057309436	20.59	2.4808	19.252	18.851	21.331	-1.3386					183	49	7	0	0	0	0.69099	1	177	177		32.751	3.1998	1	5179600	+		21058	18867	17179	17202	23445	23445					0.01951950785542067
ITLANKHL	8	Unmodified	_ITLANKHL_					0	0	0		nc|ENSG00000163145|Q9BXJ2-2|C1QTNF7;ENSG00000163145|ENST00000444304|C1QTNF7;ENSG00000145861|ENST00000652664|C1QTNF2	nc|ENSG00000163145|Q9BXJ2-2|C1QTNF7	nc|ENSG00000163145|Q9BXJ2-2|C1QTNF7	MULTI-MSMS	OvCa99_classI_Rep5	1	455.280517578125	2	455.279452	908.544351	2.2903	0.0010427	0.46574	0.00021204	2.756	0.0012548	455.2795024625832	76.79	0.84737	76.79	76.405	77.252	0					51	20	3	0	0	0	0.53531	1	7724	7724		73.975	0	1	1849800			21059	6272	17180	17203	23446	23446					0.08642081514040001
ITLANKHL	8	Unmodified	_ITLANKHL_					0	0	0		nc|ENSG00000163145|Q9BXJ2-2|C1QTNF7;ENSG00000163145|ENST00000444304|C1QTNF7;ENSG00000145861|ENST00000652664|C1QTNF2	nc|ENSG00000163145|Q9BXJ2-2|C1QTNF7	nc|ENSG00000163145|Q9BXJ2-2|C1QTNF7	MULTI-MATCH	OvCa9_classI_Rep2	2		2	455.279452	908.544351	1.4245	0.00064855	-1.3945	-0.0006349	0.02999	1.3654E-05	455.2787198146834	78.636	1.1058	76.896	76.512	77.617	-1.7398	0.1221	-0.0011172	NaN	73.975	38	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28853			21060	6272	17180	17203							0.08642081514040001
ITLANKHL	8	Unmodified	_ITLANKHL_					0	0	0		nc|ENSG00000163145|Q9BXJ2-2|C1QTNF7;ENSG00000163145|ENST00000444304|C1QTNF7;ENSG00000145861|ENST00000652664|C1QTNF2	nc|ENSG00000163145|Q9BXJ2-2|C1QTNF7	nc|ENSG00000163145|Q9BXJ2-2|C1QTNF7	MULTI-MATCH	OvCa9_classI_Rep3	3		2	455.279452	908.544351	0.017203	7.832E-06	0.2488	0.00011327	0.266	0.0001211	455.27933310624667	78.943	1.0958	76.603	76.367	77.463	-2.3399	-0.17093	0.00037912	NaN	73.975	40	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71416			21061	6272	17180	17203							0.08642081514040001
ITLANKHL	8	Unmodified	_ITLANKHL_					0	0	0		nc|ENSG00000163145|Q9BXJ2-2|C1QTNF7;ENSG00000163145|ENST00000444304|C1QTNF7;ENSG00000145861|ENST00000652664|C1QTNF2	nc|ENSG00000163145|Q9BXJ2-2|C1QTNF7	nc|ENSG00000163145|Q9BXJ2-2|C1QTNF7	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	455.279452	908.544351	-0.073073	-3.3268E-05	-0.39245	-0.00017867	-0.46552	-0.00021194	455.2790528367712	79.558	0.76617	76.807	76.61	77.376	-2.7514	0.032738	-0.00020478	NaN	73.975	36	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50917			21062	6272	17180	17203							0.08642081514040001
ITLAPLRYRSR	11	Unmodified	_ITLAPLRYRSR_					0	0	0			REV__ENST00000518050.1_1_8:27466361-27472184:-|nuORF	REV__ENST00000518050.1_1_8:27466361-27472184:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	449.28656005859375	3	449.273611	1344.799	0.53436	0.00024008	0.15218	6.8368E-05	0.68654	0.00030844	449.27388623475787	52.895	0.47735	52.895	52.653	53.131	0					24	10	3	0	0	0	0.02595	1	4180	4180		39.873	22.04	1	587450	+		21063	27026	17181	17204	23447	23447					0.14039523262385956
ITLENKISQ	9	Unmodified	_ITLENKISQ_					0	0	0			REV__nc|ENSG00000165113|Q5VSY0-2|GKAP1	REV__nc|ENSG00000165113|Q5VSY0-2|GKAP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.8312377929688	2	523.298039	1044.58152	-0.25381	-0.00013282	-0.15739	-8.2362E-05	-0.4112	-0.00021518	523.2977866094626	98.129	2.0468	95.751	95.317	97.364	-2.3786					89	39	4	0	0	0	0.027461	1	8669	8669		40.778	1.5253	1	453540	+		21064	21058	17182	17205	23448	23448					0.06101708269147821
ITLENKISQ	9	Unmodified	_ITLENKISQ_					0	0	0			REV__nc|ENSG00000165113|Q5VSY0-2|GKAP1	REV__nc|ENSG00000165113|Q5VSY0-2|GKAP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	523.298039	1044.58152	0.45209	0.00023658	-1.0266	-0.00053723	-0.57453	-0.00030065	523.2973383961992	96.742	2.211	95.783	95.331	97.542	-0.95857	-0.0096556	-0.00064523	NaN	32.812	97	44	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	348190	+		21065	21058	17182	17205							0.06101708269147821
ITLENKISQ	9	Unmodified	_ITLENKISQ_					0	0	0			REV__nc|ENSG00000165113|Q5VSY0-2|GKAP1	REV__nc|ENSG00000165113|Q5VSY0-2|GKAP1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	523.298039	1044.58152	-0.70574	-0.00036931	0.18921	9.9012E-05	-0.51653	-0.0002703	523.2979810349735	97.604	2.036	95.844	95.414	97.45	-1.7595	0.05157	0.00062725	NaN	32.812	86	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	480750	+		21066	21058	17182	17205							0.06101708269147821
ITLEQIQSI	9	Unmodified	_ITLEQIQSI_					0	0	0		tr|A0A553SMY5|A0A553SMY5_NIACIGlutaminesynthetaseOS=NialliacirculansOX=1397GN=CEQ21_23430PE=3SV=1	tr|A0A553SMY5|A0A553SMY5_NIACIGlutaminesynthetaseOS=NialliacirculansOX=1397GN=CEQ21_23430PE=3SV=1	tr|A0A553SMY5|A0A553SMY5_NIACIGlutaminesynthetaseOS=NialliacirculansOX=1397GN=CEQ21_23430PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.7737426757812	2	522.800414	1043.58628	1.2912	0.00067504	1.4197	0.00074223	2.7109	0.0014173	522.8009902075465	93.114	0.62318	93.114	92.885	93.508	0					28	14	3	0	0	0	0.027462	1	10057	10057		39.253	8.9351	1	1232500			21067	33885	17183	17206	23449	23449					0.06622592411918049
ITLEWASPQ	9	Unmodified	_ITLEWASPQ_					0	0	0		ENSG00000154438|ENST00000284629|ASZ1	ENSG00000154438|ENST00000284629|ASZ1	ENSG00000154438|ENST00000284629|ASZ1	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.8058471679688	2	522.771657	1043.52876	0.41326	0.00021604	-4.2333	-0.002213	-3.82	-0.001997	523.2686140287709	93.169	0.6096	92.001	91.756	92.366	-1.168					14	11	2	0	0	0	0.027441	1	8345	8345		45.952	7.1458	1	30132			21068	5736	17184	17207	23450	23450					0.008737502063240754
ITLFDQEF	8	Unmodified	_ITLFDQEF_					0	0	0			REV__nc|ENSG00000125779|Q9BZ23-2|PANK2	REV__nc|ENSG00000125779|Q9BZ23-2|PANK2	MULTI-MSMS	OvCa99_classI_Rep5	1	506.7526550292969	2	506.752933	1011.49131	2.6174	0.0013264	-3.9852	-0.0020195	-1.3678	-0.00069313	506.75083593777885	86.368	0.85772	86.368	86.073	86.931	0					55	20	4	0	0	0	0.60331	1	9101	9101		63.306	5.495	1	9716100	+		21069	18744	17185	17208	23451	23451					-0.01397341059282553
ITLFEPSLR	9	Unmodified	_ITLFEPSLR_					0	0	0		nc|ENSG00000163645|Q7L0X2-3|ERICH6;nc|ENSG00000163645|Q7L0X2-2|ERICH6;ENSG00000163645|ENST00000295910|ERICH6	nc|ENSG00000163645|Q7L0X2-3|ERICH6	nc|ENSG00000163645|Q7L0X2-3|ERICH6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	539.2911376953125	2	538.310949	1074.60735	-2.6044	-0.001402	1.3612	0.00073277	-1.2432	-0.0006692	538.311401276835	108.41	1.2089	106.69	106.37	107.58	-1.7256					62	23	4	0	0	0	0.027441	1	9924	9924		49.442	12.282	1	487210			21070	6340	17186	17209	23452	23452					0.0730260251141317
ITLFEPSLR	9	Unmodified	_ITLFEPSLR_					0	0	0		nc|ENSG00000163645|Q7L0X2-3|ERICH6;nc|ENSG00000163645|Q7L0X2-2|ERICH6;ENSG00000163645|ENST00000295910|ERICH6	nc|ENSG00000163645|Q7L0X2-3|ERICH6	nc|ENSG00000163645|Q7L0X2-3|ERICH6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	538.310949	1074.60735	1.145	0.00061639	-2.0183	-0.0010865	-0.8733	-0.00047011	538.3095950519881	107.86	1.2381	106.67	106.38	107.61	-1.1978	0.01768	-0.0014153	NaN	49.442	64	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	468000			21071	6340	17186	17209							0.0730260251141317
ITLFTSFDL	9	Unmodified	_ITLFTSFDL_					0	0	0			REV__nc|ENSG00000129007|Q96GE6-2|CALML4	REV__nc|ENSG00000129007|Q96GE6-2|CALML4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.2908935546875	2	528.784233	1055.55391	-2.3478	-0.0012415	-0.74369	-0.00039325	-3.0915	-0.0016348	528.7838191593775	50.283	0.46925	47.142	46.922	47.392	-3.1416					12	8	2	0	0	0	0.027462	1	2908	2908		16.473	1.6083	1	119000	+		21072	18882	17187	17210	23453	23453					0.0283580500890821
ITLFTSFDL	9	Unmodified	_ITLFTSFDL_					0	0	0			REV__nc|ENSG00000129007|Q96GE6-2|CALML4	REV__nc|ENSG00000129007|Q96GE6-2|CALML4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	528.784233	1055.55391	-1.5477	-0.00081838	-1.6995	-0.00089867	-3.2472	-0.001717	528.7833412994657	49.933	0.59591	47.139	46.834	47.43	-2.794	-0.0014205	-0.00056795	NaN	16.473	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27875	+		21073	18882	17187	17210							0.0283580500890821
ITLIGNLLIVL	11	Unmodified	_ITLIGNLLIVL_					0	0	0		ENSG00000172146|ENST00000641732|OR1A1	ENSG00000172146|ENST00000641732|OR1A1	ENSG00000172146|ENST00000641732|OR1A1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	591.373046875	2	591.397025	1180.7795	-0.69479	-0.00041089	-2.2698	-0.0013424	-2.9646	-0.0017533	591.8967390154077	73.713	0.1936	70.317	70.172	70.366	-3.3961					5	3	2	0	0	0	0.025912	1	5725	5725		29.17	10.067	1	12485			21074	7268	17188	17211	23454	23454					0.1963375419895783
ITLIVGEFGY	10	Unmodified	_ITLIVGEFGY_					0	0	0			REV__nc|ENSG00000172350|Q9H172-4|ABCG4	REV__nc|ENSG00000172350|Q9H172-4|ABCG4	MULTI-SECPEP	OvCa9_classI_Rep3	3	556.7953491210938	2	556.305332	1110.59611	-0.52448	-0.00029177	3.1286	0.0017405	2.6041	0.0014487	556.3069241314574	114.63	0.74042	113.58	113.3	114.04	-1.055					27	14	2	0	0	0	0.026665	1	8514	8514		26.693	1.1189	1	108250	+		21075	21692	17189	17212	23455	23455					0.0452378041729844
ITLIVGEFGY	10	Unmodified	_ITLIVGEFGY_					0	0	0			REV__nc|ENSG00000172350|Q9H172-4|ABCG4	REV__nc|ENSG00000172350|Q9H172-4|ABCG4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	556.305332	1110.59611	0.93937	0.00052257	1.3034	0.00072508	2.2428	0.0012477	556.3058406595636	113.74	0.83914	113.62	113.37	114.21	-0.11777	0.013006	-0.00069958	NaN	26.693	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85747	+		21076	21692	17189	17212							0.0452378041729844
ITLIVVMAI	9	Unmodified	_ITLIVVMAI_					0	0	0		tr|A0A7D6VQ35|A0A7D6VQ35_9CLOTGlycosyltransferasefamily39proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18675PE=4SV=1	tr|A0A7D6VQ35|A0A7D6VQ35_9CLOTGlycosyltransferasefamily39proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18675PE=4SV=1	tr|A0A7D6VQ35|A0A7D6VQ35_9CLOTGlycosyltransferasefamily39proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18675PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.8095703125	2	486.811739	971.608925	-0.096421	-4.6939E-05	-3.3474	-0.0016296	-3.4438	-0.0016765	486.80997360124303	130.23	1.3225	129.12	128.88	130.21	-1.1121					55	26	3	0	0	0	0.52083	1	10318	10318		40.573	1.5511	1	142420			21077	34818	17190	17213	23456	23456					0.12198520275831015
ITLKHSELV	9	Unmodified	_ITLKHSELV_					0	0	0			REV__ENSG00000280165|ENST00000409204|PCDH20	REV__ENSG00000280165|ENST00000409204|PCDH20	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.2831420898438	2	520.310949	1038.60735	-0.10615	-5.5233E-05	-0.80233	-0.00041746	-0.90848	-0.00047269	520.3104391903099	69.661	0.54677	67.091	66.765	67.311	-2.5707					16	10	2	0	0	0	0.027462	1	5562	5562		26.693	1.1189	1	13886	+		21078	23658	17191	17214	23457	23457					0.08958602511415847
ITLKNGKHI	9	Unmodified	_ITLKNGKHI_					0	0	0			REV__tr|A0A7D6ZXE5|A0A7D6ZXE5_9CLOTDNApolymeraseIIIsubunitdelta'OS=ClostridiumintestinaleOX=36845GN=HZF06_21515PE=4SV=1	REV__tr|A0A7D6ZXE5|A0A7D6ZXE5_9CLOTDNApolymeraseIIIsubunitdelta'OS=ClostridiumintestinaleOX=36845GN=HZF06_21515PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	512.3206176757812	2	512.319109	1022.62366	2.0679	0.0010594	0.1232	6.3117E-05	2.1911	0.0011226	512.3190052422376	78.266	1.0283	78.266	77.968	78.996	0					55	24	3	0	0	0	0.38529	1	7939	7939		53.351	2.016	1	1026300	+		21079	32329	17192	17215	23458	23458					0.11325728468182206
ITLLKKREA	9	Unmodified	_ITLLKKREA_					0	0	0		nc|ENSG00000205302|O60749-2|SNX2;SNX2|p.N438Kfs*15|1|0.12|ENSG00000205302|chr5:122826148-122826185|TAACAAACCAGATAAAATACAGCAAGCTAAAAATGAAA/-|frameshift_variant;ENSG00000205302|ENST00000379516|SNX2;ENST00000514030.1_1_5:122153007-122163181:+|nuORF	nc|ENSG00000205302|O60749-2|SNX2	nc|ENSG00000205302|O60749-2|SNX2	MULTI-MSMS	OvCa99_classI_Rep5	1	536.3510131835938	2	536.347866	1070.68118	2.3258	0.0012474	3.1865	0.001709	5.5122	0.0029565	536.3493510612169	84.783	0.61909	84.783	84.55	85.169	0					44	14	4	0	0	0	0.14855	1	8873	8873		85.161	2.9203	1	2597000			21080	9063	17193	17216	23459	23459					0.1486657067375745
ITLLQGGLVYG	11	Unmodified	_ITLLQGGLVYG_					0	0	0			REV__ENSG00000173930|ENST00000310954|SLCO4C1	REV__ENSG00000173930|ENST00000310954|SLCO4C1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3297119140625	2	567.331882	1132.64921	-3.474	-0.0019709	-0.21845	-0.00012393	-3.6925	-0.0020949	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.70865	1	12131	12131		26.693	3.1702	1	458690	+		21081	21810	17194	17217	23460	23460					0.0881915819995811
ITLLSHPPPE	10	Unmodified	_ITLLSHPPPE_					0	0	0		ENST00000578618.5_1_18:5398654-5398756:-|nuORF	ENST00000578618.5_1_18:5398654-5398756:-|nuORF	ENST00000578618.5_1_18:5398654-5398756:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.7847290039062	2	552.308406	1102.60226	1.5618	0.00086262	2.7444	0.0015158	4.3063	0.0023784	552.3099724017871	116.84	0.53799	116.84	116.64	117.18	0					16	11	2	0	0	0	0.026639	1	13383	13383		53.351	0	1	269580			21082	13969	17195	17218	23461	23461					0.05506298648788288
ITLLVTGFTQ	10	Unmodified	_ITLLVTGFTQ_					0	0	0			REV__tr|A0A553SP82|A0A553SP82_NIACICarbamoylphosphatesynthaselargechainOS=NialliacirculansOX=1397GN=carBPE=3SV=1	REV__tr|A0A553SP82|A0A553SP82_NIACICarbamoylphosphatesynthaselargechainOS=NialliacirculansOX=1397GN=carBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	547.3394775390625	2	546.818607	1091.62266	0.41815	0.00022865	-0.050556	-2.7645E-05	0.36759	0.00020101	546.8184514108342	70.867	0.77586	68.296	67.965	68.741	-2.5707					23	14	2	0	0	0	0.026659	1	5730	5730		37.812	9.9293	1	48020	+		21083	30509	17196	17219	23462	23462					0.08051469308611559
ITLMRRIFL	9	Unmodified	_ITLMRRIFL_					0	0	0		ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.2963256835938	2	581.860086	1161.70562	1.9793	0.0011517	-2.1039	-0.0012242	-0.12458	-7.2489E-05	581.8586381683472	106.45	0.92046	106.45	106.1	107.02	0					51	20	4	0	0	0	0.027456	1	12014	12014		38.806	3.1879	1	1246900			21084	4319	17197	17220	23463	23463					0.13123507555633296
ITLMVGLLI	9	Unmodified	_ITLMVGLLI_					0	0	0			REV__chr20:42199388-42248687|137|16.46|0.87|4.24|-|ENST00000373201|PTPRT,PTPRT	REV__chr20:42199388-42248687|137|16.46|0.87|4.24|-|ENST00000373201|PTPRT,PTPRT	MULTI-MSMS	OvCa99_classI_Rep5	1	486.8106994628906	2	486.811739	971.608925	1.4902	0.00072543	-2.8972	-0.0014104	-1.4071	-0.00068498	486.8100959432285	130.15	0.56995	130.15	129.91	130.48	0					22	11	3	0	0	0	0.13154	1	15096	15096		88.643	8.7036	1	185590	+		21085	16017	17198	17221	23464	23464					0.12198520275853753
ITLMVGLLI	9	Unmodified	_ITLMVGLLI_					0	0	0			REV__chr20:42199388-42248687|137|16.46|0.87|4.24|-|ENST00000373201|PTPRT,PTPRT	REV__chr20:42199388-42248687|137|16.46|0.87|4.24|-|ENST00000373201|PTPRT,PTPRT	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	486.811739	971.608925	1.4902	0.00072543	-2.8972	-0.0014104	-1.4071	-0.00068498	486.8100959432285	130.15	0.56995	130.15	129.91	130.48	0	0	0	NaN	88.643	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185590	+		21086	16017	17198	17221							0.12198520275853753
ITLNFLYC	8	Unmodified	_ITLNFLYC_					0	0	0		ENST00000535229.1_1_6:166195147-166399619:-|nuORF	ENST00000535229.1_1_6:166195147-166399619:-|nuORF	ENST00000535229.1_1_6:166195147-166399619:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.32489013671875	2	493.754421	985.494289	0.048529	2.3962E-05	2.4574	0.0012133	2.5059	0.0012373	493.7530312854636	79.571	0.15421	77.231	77.155	77.309	-2.3399					4	2	2	0	0	0	0.028476	1	4307	4307		28.254	1.4582	1	3839.8			21087	13370	17199	17222	23465	23465					0.0009621079386761267
ITLPLALLFLI	11	Unmodified	_ITLPLALLFLI_					0	0	0		ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	MULTI-MSMS	OvCa9_classI_Rep2	2	409.60821533203125	3	409.608937	1225.80498	0.6889	0.00028218	-3.0246	-0.0012389	-2.3357	-0.00095672	409.60766459120623	104.29	12.102	103.72	103.28	115.38	-0.57639					699	244	5	0	0	0	0.66495	1	9809	9809		38.754	3.5754	1	1628000			21088	5053	17200	17223	23466	23466					0.2011122872136184
ITLSFKKKV	9	Unmodified	_ITLSFKKKV_					0	0	0		ENST00000320694.12_1_5:67589585-67590376:+|nuORF	ENST00000320694.12_1_5:67589585-67590376:+|nuORF	ENST00000320694.12_1_5:67589585-67590376:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	531.8169555664062	2	532.347335	1062.68012	-1.1269	-0.00059991	0.89196	0.00047483	-0.23494	-0.00012507	532.347799829167	138.02	1.078	136.94	136.58	137.66	-1.0858					40	21	3	0	0	0	0.027462	1	11334	11334		17.365	0	1	36059			21089	10369	17201	17224	23467	23467					0.15128356304853696
ITLSIHQSVEN	11	Unmodified	_ITLSIHQSVEN_					0	0	0		ENST00000478631.6_2_1:53460811-53461279:+|nuORF	ENST00000478631.6_2_1:53460811-53461279:+|nuORF	ENST00000478631.6_2_1:53460811-53461279:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	620.83251953125	2	620.830234	1239.64592	-1.2546	-0.00077886	4.0231	0.0024976	2.7685	0.0017188	620.8326870345176	98.983	3.0275	98.09	97.757	100.78	-0.89305					162	60	6	0	0	0	0.20362	1	9054	9054		79.489	7.6116	1	2033000			21090	12495	17202	17225	23468	23468					0.035678633553061445
ITLSIHQSVEN	11	Unmodified	_ITLSIHQSVEN_					0	0	0		ENST00000478631.6_2_1:53460811-53461279:+|nuORF	ENST00000478631.6_2_1:53460811-53461279:+|nuORF	ENST00000478631.6_2_1:53460811-53461279:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	620.834716796875	2	620.830234	1239.64592	0.44047	0.00027346	1.8611	0.0011554	2.3016	0.0014289	620.8312978527068	99.854	3.421	98.169	97.777	101.2	-1.685					160	66	5	0	0	0	0.049118	1	6749	6749		123.21	32.838	1	2228000			21091	12495	17202	17225	23469	23469					0.035678633553061445
ITLSLSKNN	9	Unmodified	_ITLSLSKNN_					0	0	0		ENST00000218176.3_1_X:48827497-48827860:-|nuORF	ENST00000218176.3_1_X:48827497-48827860:-|nuORF	ENST00000218176.3_1_X:48827497-48827860:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	494.2919616699219	2	495.284931	988.55531	0.2658	0.00013165	-2.6736	-0.0013242	-2.4078	-0.0011925	495.28321215264145	106.87	0.23824	105.6	105.48	105.71	-1.267					6	4	2	0	0	0	0.027462	1	7562	7562		35.618	2.8059	1	20137			21092	9681	17203	17226	23470	23470					0.06057439097662609
ITLTGPIGWA	10	Unmodified	_ITLTGPIGWA_					0	0	0			REV__ENSG00000104290|ENST00000240093|FZD3	REV__ENSG00000104290|ENST00000240093|FZD3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.8107299804688	2	514.792392	1027.57023	0.25659	0.00013209	-0.30271	-0.00015583	-0.046119	-2.3742E-05	514.792043770635	115.02	0.65929	113.63	113.41	114.07	-1.3977					20	12	2	0	0	0	0.02748	1	10712	10712		94.006	37.285	1	39002	+		21093	17655	17204	17227	23471	23471					0.057549309656678815
ITLTVLLIQ	9	Unmodified	_ITLTVLLIQ_					0	0	0			REV__tr|A0A7D6ZHF2|A0A7D6ZHF2_9CLOTPotassium-transportingATPaseATP-bindingsubunitOS=ClostridiumintestinaleOX=36845GN=kdpBPE=3SV=1	REV__tr|A0A7D6ZHF2|A0A7D6ZHF2_9CLOTPotassium-transportingATPaseATP-bindingsubunitOS=ClostridiumintestinaleOX=36845GN=kdpBPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	507.3352355957031	2	507.333893	1012.65323	1.0602	0.00053786	1.1777	0.00059746	2.2378	0.0011353	507.33433102823324	139.07	2.2902	139.07	138.69	140.98	0					125	47	4	0	0	0	0.11471	1	16263	16263		93.195	8.2799	1	754840	+		21094	32023	17205	17228	23472	23472					0.14741247693677906
ITLVAFAMCV	10	Unmodified	_ITLVAFAMCV_					0	0	0			REV__nc|ENSG00000154611|Q8TAA3|PSMA8	REV__nc|ENSG00000154611|Q8TAA3|PSMA8	MULTI-MSMS	OvCa9_classI_Rep3	3	534.2843627929688	2	534.285031	1066.55551	-2.0798	-0.0011112	0.20095	0.00010736	-1.8788	-0.0010038	534.2851091761327	143.26	1.286	142.27	141.94	143.23	-0.9903					60	25	3	0	0	0	0.69986	1	11953	11953		30.504	0.6621	1	116190	+		21095	28937	17206	17229	23473	23473					0.02489399501655498
ITLVATKQPH	10	Unmodified	_ITLVATKQPH_					0	0	0			REV__tr|A0A553SPT5|A0A553SPT5_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_08335PE=4SV=1	REV__tr|A0A553SPT5|A0A553SPT5_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_08335PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	554.33154296875	2	554.329673	1106.64479	1.7532	0.00097186	-2.9576	-0.0016395	-1.2044	-0.00066763	554.3279849152871	106.89	0.81314	106.89	106.63	107.44	0					35	18	3	0	0	0	0.65434	1	12044	12044		35.618	0	1	722160	+		21096	30568	17207	17230	23474	23474					0.09573693777042536
ITMFEDFDV	9	Unmodified	_ITMFEDFDV_					0	0	0			REV__nc|ENSG00000183166|Q9BXU9-1|CALN1	REV__nc|ENSG00000183166|Q9BXU9-1|CALN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.7708740234375	2	558.749533	1115.48451	0.18529	0.00010353	-3.8266	-0.0021381	-3.6413	-0.0020346	558.7480484940177	29.995	0.20168	29.995	29.835	30.036	0					5	3	2	0	0	0	0.027462	1	1108	1108		30.504	8.5438	1	28407	+		21097	22346	17208	17231	23475	23475					-0.06861022002158279
ITMFPLKEA	9	Unmodified	_ITMFPLKEA_					0	0	0			REV__tr|A0A553SKB2|A0A553SKB2_NIACIprephenatedehydrataseOS=NialliacirculansOX=1397GN=pheAPE=4SV=1	REV__tr|A0A553SKB2|A0A553SKB2_NIACIprephenatedehydrataseOS=NialliacirculansOX=1397GN=pheAPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	525.2879028320312	2	525.288628	1048.5627	2.3331	0.0012255	-3.8411	-0.0020177	-1.5081	-0.00079217	525.2864535783314	86.486	1.9376	86.486	86.192	88.13	0					97	46	4	0	0	0	0.16562	1	9106	9106		82.241	9.3613	1	8471400	+		21098	30102	17209	17232	23476	23476					0.04036455373739045
ITMFPLKEA	9	Unmodified	_ITMFPLKEA_					0	0	0			REV__tr|A0A553SKB2|A0A553SKB2_NIACIprephenatedehydrataseOS=NialliacirculansOX=1397GN=pheAPE=4SV=1	REV__tr|A0A553SKB2|A0A553SKB2_NIACIprephenatedehydrataseOS=NialliacirculansOX=1397GN=pheAPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	525.288628	1048.5627	1.6664	0.00087535	-6.8048	-0.0035745	-5.1384	-0.0026992	525.2847562614767	88.244	1.3278	86.876	86.446	87.774	-1.3676	0.12984	-0.0024331	NaN	82.241	57	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74461	+		21099	30102	17209	17232							0.04036455373739045
ITMFPLKEA	9	Unmodified	_ITMFPLKEA_					0	0	0			REV__tr|A0A553SKB2|A0A553SKB2_NIACIprephenatedehydrataseOS=NialliacirculansOX=1397GN=pheAPE=4SV=1	REV__tr|A0A553SKB2|A0A553SKB2_NIACIprephenatedehydrataseOS=NialliacirculansOX=1397GN=pheAPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	525.288628	1048.5627	-0.89303	-0.0004691	-3.7292	-0.0019589	-4.6222	-0.002428	525.2862552230797	88.882	1.5874	86.751	86.315	87.902	-2.1309	0.0052111	0.00079807	NaN	82.241	59	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127150	+		21100	30102	17209	17232							0.04036455373739045
ITMFPLKEA	9	Unmodified	_ITMFPLKEA_					0	0	0			REV__tr|A0A553SKB2|A0A553SKB2_NIACIprephenatedehydrataseOS=NialliacirculansOX=1397GN=pheAPE=4SV=1	REV__tr|A0A553SKB2|A0A553SKB2_NIACIprephenatedehydrataseOS=NialliacirculansOX=1397GN=pheAPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	525.288628	1048.5627	-0.21566	-0.00011328	-4.4765	-0.0023514	-4.6921	-0.0024647	525.2859481701291	89.448	1.3908	86.871	86.46	87.851	-2.5765	0.12525	1.2967E-05	NaN	82.241	62	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112240	+		21101	30102	17209	17232							0.04036455373739045
ITMFTFITQLL	11	Unmodified	_ITMFTFITQLL_					0	0	0		ENST00000507310.1_2_5:102482311-102483895:+|nuORF	ENST00000507310.1_2_5:102482311-102483895:+|nuORF	ENST00000507310.1_2_5:102482311-102483895:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.6031188964844	3	443.249192	1326.72575	-1.829	-0.00081071	0.77245	0.00034239	-1.0566	-0.00046833	443.2492397700971	49.987	1.1422	46.846	46.61	47.753	-3.1416					27	21	2	0	0	0	0.025551	1	2896	2896		30.569	0	1	20797			21102	12926	17210	17233	23477	23477					0.07545213704929665
ITMIHHPS	8	Unmodified	_ITMIHHPS_					0	0	0		ENSG00000172901|ENST00000357872|LVRN;nc|ENSG00000172901|Q6Q4G3-2|LVRN	ENSG00000172901|ENST00000357872|LVRN	ENSG00000172901|ENST00000357872|LVRN	MULTI-MSMS	OvCa99_classI_Rep5	1	468.24493408203125	2	468.242012	934.469472	1.7075	0.00079953	2.9372	0.0013753	4.6447	0.0021748	468.2432220406248	110.04	0.54005	110.04	109.81	110.35	0					19	11	2	0	0	0	0.67745	1	12488	12488		47.916	0.25827	1	384150			21103	7328	17211	17234	23478	23478					-0.00038424288834448816
ITMNKMKLL	9	Oxidation (M)	_ITMNKM(Oxidation (M))KLL_		ITM(0.02)NKM(0.98)KLL		ITM(-17)NKM(17)KLL	0	0	1		ENST00000465407.5_1_10:46135230-46135753:-|nuORF;ZFAND4|p.H249Qfs*5|1|0.06|ENSG00000172671|chr10:45627076-45627077|-/CT|frameshift_variant;ENSG00000172671|ENST00000344646|ZFAND4	ENST00000465407.5_1_10:46135230-46135753:-|nuORF	ENST00000465407.5_1_10:46135230-46135753:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	554.3209228515625	2	554.316863	1106.61917	2.6123	0.001448	1.753	0.00097175	4.3653	0.0024198	554.3176908541659	121.39	0.56718	121.39	121.19	121.75	0					19	12	2	0	0	0	0.12365	1	13960	13960		90.777	8.4716	2	419880			21104	7311	17212	17235	23479	23479		220			0.07012759938766067
ITMNMKKY	8	Oxidation (M)	_ITMNM(Oxidation (M))KKY_		ITM(0.032)NM(0.968)KKY		ITM(-15)NM(15)KKY	0	0	1			REV__ENST00000443503.6_2_3:38022755-38022872:+|nuORF	REV__ENST00000443503.6_2_3:38022755-38022872:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	522.7655639648438	2	522.764463	1043.51437	-1.5548	-0.00081278	1.2899	0.00067432	-0.26487	-0.00013847	522.7650839724328	44.063	1.0149	44.063	43.78	44.795	0					48	22	3	0	0	0	0.66704	1	2968	2968		50.025	9.2464	2	3123700	+		21105	25870	17213	17236	23480	23480		582			-0.005643615378176037
ITNEPGIYKE	10	Unmodified	_ITNEPGIYKE_					0	0	0		tr|A0A7D7ADT8|A0A7D7ADT8_9CLOTAminopeptidasePfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00235PE=3SV=1	tr|A0A7D7ADT8|A0A7D7ADT8_9CLOTAminopeptidasePfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00235PE=3SV=1	tr|A0A7D7ADT8|A0A7D7ADT8_9CLOTAminopeptidasePfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00235PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.2847290039062	2	582.300778	1162.587	2.1435	0.0012482	3.0003	0.0017471	5.1438	0.0029952	582.3017174616514	94.786	0.5581	94.786	94.433	94.992	0					14	12	2	0	0	0	0.026464	1	10309	10309		76.17	0	1	195700			21106	36243	17214	17237	23481	23481					0.012213870609457445
ITNFGTIAGN	10	Unmodified	_ITNFGTIAGN_					0	0	0			REV__tr|A0A7D7A2W1|A0A7D7A2W1_9CLOTPhagetailtapemeasureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19185PE=4SV=1	REV__tr|A0A7D7A2W1|A0A7D7A2W1_9CLOTPhagetailtapemeasureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19185PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	504.263427734375	2	504.261456	1006.50836	0.41342	0.00020847	-0.7985	-0.00040265	-0.38508	-0.00019418	504.26105932020806	72.508	1.8124	72.508	72.208	74.02	0					121	45	6	0	0	0	0.28422	1	7103	7103		82.75	5.9763	1	61068000	+		21107	32555	17215	17238	23482	23482					0.005365795465195333
ITNKYNVPL	9	Unmodified	_ITNKYNVPL_					0	0	0		tr|A0A7D6VPK5|A0A7D6VPK5_9CLOTThiamine-phosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=thiEPE=3SV=1	tr|A0A7D6VPK5|A0A7D6VPK5_9CLOTThiamine-phosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=thiEPE=3SV=1	tr|A0A7D6VPK5|A0A7D6VPK5_9CLOTThiamine-phosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=thiEPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	531.3034057617188	2	531.303124	1060.5917	-1.6359	-0.00086914	1.1184	0.00059418	-0.51752	-0.00027496	531.3036361456938	121.24	1.2365	121.04	120.75	121.99	-0.19718					54	24	3	0	0	0	0.50149	1	11706	11706		42.396	3.1433	1	173930			21108	34777	17216	17239	23483	23483					0.06382315994369492
ITNLLSPSPG	10	Unmodified	_ITNLLSPSPG_					0	0	0			REV__ENSG00000099308|ENST00000687212|MAST3	REV__ENSG00000099308|ENST00000687212|MAST3	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.7665100097656	2	499.779482	997.544411	-0.3182	-0.00015903	1.015	0.00050727	0.69679	0.00034824	499.7798172523393	40.917	0.66562	40.917	40.619	41.285	0					26	14	2	0	0	0	0.026548	1	2478	2478		63.534	6.8128	1	266290	+		21109	17320	17217	17240	23484	23484					0.04554036723391164
ITNPKSLLY	9	Unmodified	_ITNPKSLLY_					0	0	0		TMEM62|p.A601Lfs*11|1|0.07|ENSG00000137842|chr15:43184454-43184454|A/-|frameshift_variant;ENSG00000137842|ENST00000260403|TMEM62	TMEM62|p.A601Lfs*11|1|0.07|ENSG00000137842|chr15:43184454-43184454|A/-|frameshift_variant	TMEM62|p.A601Lfs*11|1|0.07|ENSG00000137842|chr15:43184454-43184454|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	524.805908203125	2	524.8055	1047.59645	-1.7559	-0.00092148	0.090516	4.7503E-05	-1.6653	-0.00087398	524.8054976909301	92.637	3.4	90.676	90.197	93.597	-1.9617					189	68	5	0	0	0	0.10502	2	5890	5890;5933		95.815	10.654	1	8798500			21110	4630	17218	17241	23485;23486	23485					0.07455200137133033
ITNRDVVF	8	Unmodified	_ITNRDVVF_					0	0	0		tr|A0A7D7A323|A0A7D7A323_9CLOTInosine-5'-monophosphatedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=guaBPE=3SV=1	REV__ENSG00000181752|ENST00000313447|OR8K5	REV__ENSG00000181752|ENST00000313447|OR8K5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	482.7831726074219	2	482.266542	962.51853	-0.92324	-0.00044525	-1.4237	-0.00068661	-2.347	-0.0011319	482.2662916815766	81.448	0.54005	78.737	78.347	78.887	-2.7106					14	10	2	0	0	0	0.028476	1	6665	6665		57.811	0	1	25180			21111	22247	17219	17242	23487	23487					0.03577187271753246
ITNRLIAIE	9	Unmodified	_ITNRLIAIE_					0	0	0			REV__nc|ENSG00000198865|Q4G0S7-2|CCDC152	REV__nc|ENSG00000198865|Q4G0S7-2|CCDC152	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.2982177734375	2	521.816399	1041.61824	1.2512	0.00065289	4.0484	0.0021125	5.2996	0.0027654	521.818465663036	110.97	1.7542	110.97	110.31	112.06	0					105	38	4	0	0	0	0.02744	1	12522	12522		62.107	5.3864	1	750460	+		21112	23082	17220	17243	23488	23488					0.0991000488568261
ITNRRAGFA	9	Unmodified	_ITNRRAGFA_					0	0	0			REV__nc|ENSG00000134508|Q8TDN4-4|CABLES1	REV__nc|ENSG00000134508|Q8TDN4-4|CABLES1	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.2816467285156	2	503.283057	1004.55156	1.9811	0.00099705	0.85943	0.00043254	2.8405	0.0014296	503.2826486296083	85.452	0.49596	85.452	85.334	85.83	0					14	11	2	0	0	0	0.027462	1	8957	8957		21.96	0	1	186400	+		21113	19209	17221	17244	23489	23489					0.049468141144643596
ITNVNAPTPS	10	Unmodified	_ITNVNAPTPS_					0	0	0			REV__nc|ENSG00000166323|Q8NCR3-2|MFI	REV__nc|ENSG00000166323|Q8NCR3-2|MFI	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.8119812011719	2	507.266739	1012.51892	-0.94199	-0.00047784	3.1005	0.0015728	2.1585	0.0010949	507.2681715085583	89.606	0.55002	87.525	87.094	87.644	-2.0805					15	10	2	0	0	0	0.026464	1	5518	5518		60.118	8.7828	1	27626	+		21114	28978	17222	17245	23490	23490					0.013165622009523759
ITPAPFAAIDN	11	Unmodified	_ITPAPFAAIDN_					0	0	0			REV__ENST00000476477.6_1_1:53362194-53379588:-|nuORF	REV__ENST00000476477.6_1_1:53362194-53379588:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.3153686523438	2	565.298039	1128.58152	-0.26002	-0.00014699	-3.2749	-0.0018513	-3.5349	-0.0019983	565.2960674816967	68.293	0.77868	68.293	68.037	68.815	0					42	18	4	0	0	0	0.025528	1	6421	6421		21.686	0	1	4042100	+		21115	18538	17223	17246	23491	23491					0.02237708269126415
ITPDNLIKI	9	Unmodified	_ITPDNLIKI_					0	0	0		tr|A0A7D6ZNZ4|A0A7D6ZNZ4_9CLOTNAD(P)/FAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18240PE=4SV=1	tr|A0A7D6ZNZ4|A0A7D6ZNZ4_9CLOTNAD(P)/FAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18240PE=4SV=1	tr|A0A7D6ZNZ4|A0A7D6ZNZ4_9CLOTNAD(P)/FAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18240PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	513.8145751953125	2	513.813325	1025.6121	-0.52087	-0.00026763	0.12081	6.2073E-05	-0.40006	-0.00020556	513.8133179520387	96.39	1.8725	94.561	93.78	95.652	-1.8286					114	36	4	0	0	0	0.14998	1	6361	6361		84.916	2.6105	1	1310500			21116	35686	17224	17247	23492	23492					0.10031486654179389
ITPDQRGSL	9	Unmodified	_ITPDQRGSL_					0	0	0		ENST00000329152.7_1_20:3144867-3145071:-|nuORF	ENST00000329152.7_1_20:3144867-3145071:-|nuORF	ENST00000329152.7_1_20:3144867-3145071:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.8017883300781	2	493.766906	985.519259	0.29062	0.0001435	-1.8594	-0.00091812	-1.5688	-0.00077462	493.7659875577877	61.619	0.99859	58.161	57.816	58.815	-3.4577					45	20	3	0	0	0	0.027462	1	4215	4215		16.473	0.83134	1	142660			21117	10428	17225	17248	23493	23493					0.025919819208070294
ITPKALADFL	10	Unmodified	_ITPKALADFL_					0	0	0		OR2AG1|p.V77I|1|0.31|ENSG00000279486|chr11:6785266-6785266|G/A|missense_variant	OR2AG1|p.V77I|1|0.31|ENSG00000279486|chr11:6785266-6785266|G/A|missense_variant	OR2AG1|p.V77I|1|0.31|ENSG00000279486|chr11:6785266-6785266|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	544.821044921875	2	544.82115	1087.62775	-0.66364	-0.00036156	-0.27028	-0.00014726	-0.93392	-0.00050882	544.8205109682528	89.641	1.1697	87.561	87.192	88.361	-2.0805					79	22	5	0	0	0	0.34811	1	5527	5527		75.043	9.5779	1	741500			21118	15453	17226	17249	23494	23494					0.08743773171227076
ITPMFDIN	8	Unmodified	_ITPMFDIN_					0	0	0			REV__ENSG00000100297|ENST00000216122|MCM5	REV__ENSG00000100297|ENST00000216122|MCM5	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.7814025878906	2	475.736228	949.457904	2.5394	0.0012081	3.1425	0.001495	5.6819	0.0027031	475.73787103858285	88.852	0.44814	88.852	88.595	89.043	0					15	10	2	0	0	0	0.028476	1	9452	9452		37.159	0	1	460300	+		21119	17393	17227	17250	23495	23495					-0.018846661028419476
ITPNDVMVSFT	11	Unmodified	_ITPNDVMVSFT_					0	0	0		tr|A0A553SF87|A0A553SF87_NIACITautomerasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_08430PE=4SV=1	tr|A0A553SF87|A0A553SF87_NIACITautomerasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_08430PE=4SV=1	tr|A0A553SF87|A0A553SF87_NIACITautomerasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_08430PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	611.354248046875	2	612.302464	1222.59037	-3.9268	-0.0024044	3.6698	0.002247	-0.25698	-0.00015735	612.3047488812693	151.55	0.15201	151.32	151.24	151.4	-0.22696					4	2	2	0	0	0	0.025814	1	15378	15378		41.427	13.544	1	5572.8			21120	33006	17228	17251	23496	23496					-0.012016861566962689
ITPNTKPLV	9	Unmodified	_ITPNTKPLV_					0	0	0			REV__nc|ENSG00000196935|Q7Z6B7-2|SRGAP1	REV__nc|ENSG00000196935|Q7Z6B7-2|SRGAP1	MULTI-MSMS	OvCa9_classI_Rep3	3	491.7992248535156	2	491.800217	981.585882	0.015139	7.4454E-06	-0.71075	-0.00034955	-0.69561	-0.0003421	491.79978875845774	107.24	3.4509	105.98	105.67	109.12	-1.267					161	66	5	0	0	0	0.19758	1	7636	7636		76.774	7.9873	1	2343100	+		21121	22877	17229	17252	23497	23497					0.09435217482689495
ITPTNTMTS	9	Unmodified	_ITPTNTMTS_					0	0	0		MUC3A|p.F2806Sfs*33|1|0.04|ENSG00000169894|chr7:100960195-100960196|TT/-|frameshift_variant;nc|ENSG00000169894|Q02505-2|MUC3A;nc|ENSG00000169894|Q02505-3|MUC3A;nc|ENSG00000169894|Q02505-4|MUC3A;nc|ENSG00000169894|Q02505-5|MUC3A;ENSG00000169894|ENST00000379458|MUC3A	MUC3A|p.F2806Sfs*33|1|0.04|ENSG00000169894|chr7:100960195-100960196|TT/-|frameshift_variant	MUC3A|p.F2806Sfs*33|1|0.04|ENSG00000169894|chr7:100960195-100960196|TT/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.7176818847656	2	483.23405	964.453547	2.08	0.0010051	0.13357	6.4545E-05	2.2135	0.0010697	483.23401454287045	76.577	0.47975	76.577	76.238	76.718	0					17	11	3	0	0	0	0.027462	1	7694	7694		20.947	0	1	258940			21122	7049	17230	17253	23498	23498					-0.03010175316387631
ITPWFKNEP	9	Unmodified	_ITPWFKNEP_					0	0	0			REV__ENSG00000178445|ENST00000321612|GLDC	REV__ENSG00000178445|ENST00000321612|GLDC	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.2999877929688	2	566.295299	1130.57605	1.8831	0.0010664	3.4089	0.0019305	5.2921	0.0029969	566.2973274968344	101.33	0.91992	101.33	100.73	101.65	0					40	21	2	0	0	0	0.027462	1	11202	11202		23.042	2.0956	1	509330	+		21123	22059	17231	17254	23499	23499					0.015980294773271453
ITPYKNAYF	9	Unmodified	_ITPYKNAYF_					0	0	0			REV__tr|A0A7D6ZJ89|A0A7D6ZJ89_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10250PE=4SV=1	REV__tr|A0A7D6ZJ89|A0A7D6ZJ89_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10250PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	558.7913818359375	2	558.78985	1115.56515	1.0194	0.00056962	-0.90589	-0.0005062	0.11349	6.342E-05	558.7890736933357	126.17	1.36	125.1	124.76	126.12	-1.0715					58	25	4	0	0	0	0.51865	1	9878	9878		40.778	1.5253	1	130080	+		21124	32082	17232	17255	23500	23500					0.011986271030309581
ITQISSMIKK	10	Unmodified	_ITQISSMIKK_					0	0	0			REV__EPHA7|p.M984I|1|0.04|ENSG00000135333|chr6:93243471-93243471|C/T|missense_variant	REV__EPHA7|p.M984I|1|0.04|ENSG00000135333|chr6:93243471-93243471|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	574.835693359375	2	574.839017	1147.66348	0.90554	0.00052054	-4.3559	-0.002504	-3.4504	-0.0019834	574.8365086671698	89.906	5.8582	88.604	88.285	94.143	-1.302					235	114	5	0	0	0	0.44431	1	7935	7935		62.107	3.3255	1	3839600	+		21125	28111	17233	17256	23501	23501					0.09555487356578851
ITQLLLAGEST	11	Unmodified	_ITQLLLAGEST_					0	0	0		ENST00000435302.5_1_1:104104711-104108189:+|nuORF;ENST00000361355.8_1_1:104097723-104108189:+|nuORF	ENST00000435302.5_1_1:104104711-104108189:+|nuORF	ENST00000435302.5_1_1:104104711-104108189:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	573.323974609375	2	573.324254	1144.63395	-1.7625	-0.0010105	1.1332	0.00064969	-0.62933	-0.00036081	573.3246679032849	146.58	1.5788	145.15	144.65	146.22	-1.4357					69	30	3	0	0	0	0.71191	1	14455	14455		25.574	0	1	161770			21126	10792	17234	17257	23502	23502					0.0674224661208882
ITQLNQGVT	9	Unmodified	_ITQLNQGVT_					0	0	0		USH2A|p.Y4273Cfs*19|1|0.36|ENSG00000042781|chr1:215675092-215675093|AT/-|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A;USH2A|p.A4046Dfs*53|1|0.04|ENSG00000042781|chr1:215680306-215680307|-/T|frameshift_variant;USH2A|p.F2516Rfs*28|1|0.25|ENSG00000042781|chr1:215900123-215900124|-/AAGGTTATTGTCACTAAACAACAAGTAAATAAGGGAGGCTCATTTCT|frameshift_variant;nc|ENSG00000042781|O75445-2|USH2A	USH2A|p.Y4273Cfs*19|1|0.36|ENSG00000042781|chr1:215675092-215675093|AT/-|frameshift_variant	USH2A|p.Y4273Cfs*19|1|0.36|ENSG00000042781|chr1:215675092-215675093|AT/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.7970886230469	2	487.269281	972.52401	-0.53882	-0.00026255	1.2578	0.00061288	0.71896	0.00035033	487.2701972861428	53.846	0.35744	53.846	53.651	54.008	0					12	8	2	0	0	0	0.027462	1	4280	4280		45.952	18.07	1	126060			21127	1126	17235	17258	23503	23503					0.03664866063570571
ITQPLGFLV	9	Unmodified	_ITQPLGFLV_					0	0	0		ENSG00000164853|ENST00000316333|UNCX	ENSG00000164853|ENST00000316333|UNCX	ENSG00000164853|ENST00000316333|UNCX	MULTI-SECPEP	OvCa9_classI_Rep3	3	494.2863464355469	2	494.29731	986.580068	-1.2231	-0.00060458	4.1553	0.002054	2.9322	0.0014494	494.29932822160214	83.834	0.17675	81.573	81.434	81.611	-2.261					5	3	2	0	0	0	0.027426	1	4818	4818		63.306	15.391	1	7679.9			21128	6492	17236	17259	23504	23504					0.08624118971044936
ITQVSTVYQS	10	Unmodified	_ITQVSTVYQS_					0	0	0			REV__tr|A0A553SUS7|A0A553SUS7_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_06350PE=4SV=1	REV__tr|A0A553SUS7|A0A553SUS7_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_06350PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.7664184570312	2	563.292953	1124.57135	0.97907	0.0005515	-2.6505	-0.001493	-1.6714	-0.0009415	563.2921356029253	45.713	0.26206	45.713	45.582	45.844	0					7	5	2	0	0	0	0.026714	1	3188	3188		51.193	8.7966	1	77082	+		21129	31117	17237	17260	23505	23505					0.014051005439114306
ITRAAAKP	8	Unmodified	_ITRAAAKP_					0	0	0		nc|ENSG00000136826|O43474-5|KLF4	nc|ENSG00000136826|O43474-5|KLF4	nc|ENSG00000136826|O43474-5|KLF4	MULTI-SECPEP	OvCa9_classI_Rep2	2	414.8983154296875	2	414.25852	826.502486	0.87196	0.00036122	-0.54005	-0.00022372	0.33191	0.0001375	414.25813717804823	40.533	0.93564	37.823	37.601	38.536	-2.7097					23	18	2	0	0	0	0.028476	1	2045	2045		45.952	8.9235	1	16804			21130	15037	17238	17261	23506	23506					0.08229525825504425
ITRADPLHIPE	11	Unmodified	_ITRADPLHIPE_					0	0	0			REV__chr20:47016297-47074158|99|21.54|0.29|6.21|+|1|EYA2,EYA2|1	REV__chr20:47016297-47074158|99|21.54|0.29|6.21|+|1|EYA2,EYA2|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	421.9166259765625	3	421.234822	1260.68264	-0.55578	-0.00023411	-1.6742	-0.00070521	-2.2299	-0.00093933	421.2336060348235	21.091	0.37114	19.752	19.595	19.966	-1.3386					11	7	2	0	0	0	0.026174	1	121	121		28.577	21.558	1	12267	+		21131	16019	17239	17262	23507	23507					0.06272159971854308
ITRALDDEL	9	Unmodified	_ITRALDDEL_					0	0	0			REV__ENST00000368226.8_1_6:128312451-128312508:-|nuORF	REV__ENST00000368226.8_1_6:128312451-128312508:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.2919921875	2	523.279846	1044.54514	-0.45764	-0.00023947	-1.4005	-0.00073287	-1.8582	-0.00097234	523.2790236113593	56.799	0.5121	56.799	56.581	57.093	0					16	11	2	0	0	0	0.027441	1	4732	4732		32.812	0	1	251480	+		21132	24918	17240	17263	23508	23508					0.024648313724128457
ITRFAKLI	8	Unmodified	_ITRFAKLI_					0	0	0			REV__tr|A0A553STZ0|A0A553STZ0_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_05985PE=3SV=1	REV__tr|A0A553STZ0|A0A553STZ0_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_05985PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	481.28912353515625	2	481.313295	960.612037	-0.54819	-0.00026385	0.31377	0.00015102	-0.23442	-0.00011283	481.3133477112299	93.993	1.3642	92.894	92.487	93.851	-1.0995					56	26	3	0	0	0	0.028476	1	8364	8364		12.207	0	1	309320	+		21133	31025	17241	17264	23509	23509					0.130155314448416
ITRFAKLI	8	Unmodified	_ITRFAKLI_					0	0	0			REV__tr|A0A553STZ0|A0A553STZ0_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_05985PE=3SV=1	REV__tr|A0A553STZ0|A0A553STZ0_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_05985PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	481.313295	960.612037	-0.39415	-0.00018971	0.22746	0.00010948	-0.16669	-8.023E-05	481.3132059086749	94.789	1.3983	92.893	92.561	93.96	-1.8956	0.0011005	-0.00029179	NaN	27.882	68	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	380930	+		21134	31025	17241	17264							0.130155314448416
ITRLPKGAVLY	11	Unmodified	_ITRLPKGAVLY_					0	0	0		ENSG00000108826|ENST00000225969|MRPL27	ENSG00000108826|ENST00000225969|MRPL27	ENSG00000108826|ENST00000225969|MRPL27	MULTI-SECPEP	OvCa99_classI_Rep5	1	615.329833984375	2	615.882073	1229.74959	2.11	0.0012995	-1.0352	-0.00063755	1.0749	0.00066199	616.3822555241317	122.15	0.41701	122.15	121.85	122.27	0					13	8	2	0	0	0	0.026007	1	14025	14025		31.53	14.062	1	76894			21135	2677	17242	17265	23510	23510					0.14390815253636902
ITRRTSLPPS	10	Unmodified	_ITRRTSLPPS_					0	0	0			REV__PCDHAC1|p.V624Ffs*13|1|0.09|ENSG00000248383|chr5:140928762-140928762|G/-|frameshift_variant	REV__PCDHAC1|p.V624Ffs*13|1|0.09|ENSG00000248383|chr5:140928762-140928762|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	564.3323974609375	2	564.330205	1126.64586	-0.43401	-0.00024492	3.2893	0.0018562	2.8553	0.0016113	564.3317149048064	118.34	1.4386	117.3	116.89	118.32	-1.0324					67	28	4	0	0	0	0.39172	1	8934	8934		69.628	7.5202	1	367330	+		21136	23483	17243	17266	23511	23511					0.08759908145952977
ITRRTSLPPS	10	Unmodified	_ITRRTSLPPS_					0	0	0			REV__PCDHAC1|p.V624Ffs*13|1|0.09|ENSG00000248383|chr5:140928762-140928762|G/-|frameshift_variant	REV__PCDHAC1|p.V624Ffs*13|1|0.09|ENSG00000248383|chr5:140928762-140928762|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.33203125	2	564.330205	1126.64586	-0.055269	-3.119E-05	3.158	0.0017822	3.1028	0.001751	564.3316411586119	118.55	1.8273	117.2	116.73	118.56	-1.3444					94	34	4	0	0	0	0.44431	1	11108	11108		62.107	12.571	1	382140	+		21137	23483	17243	17266	23512	23512					0.08759908145952977
ITRSVVKPK	9	Unmodified	_ITRSVVKPK_					0	0	0			REV__nc|ENSG00000185046|Q7Z6G8-6|ANKS1B	REV__nc|ENSG00000185046|Q7Z6G8-6|ANKS1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.7964477539062	2	514.334759	1026.65496	-0.15257	-7.847E-05	0.61317	0.00031537	0.4606	0.0002369	514.334933217159	67.528	1.2206	67.528	66.816	68.037	0					52	30	4	0	0	0	0.027426	1	6374	6374		47.657	6.8792	1	1501500	+		21138	22475	17244	17267	23513	23513					0.14270301502278926
ITRVDGRKLLL	11	Unmodified	_ITRVDGRKLLL_					0	0	0		ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-2|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	428.7147521972656	3	428.610111	1282.8085	1.8916	0.00081077	1.1207	0.00048035	3.0123	0.0012911	428.6105143093558	85.813	1.2343	83.167	82.8	84.035	-2.6463					62	24	4	0	0	0	0.025908	1	7317	7317		21.78	2.5177	1	140740			21139	1399	17245	17268	23514	23514					0.1784129154796119
ITRVDGRKLLL	11	Unmodified	_ITRVDGRKLLL_					0	0	0		ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-2|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-MATCH	OvCa9_classI_Rep3	3		3	428.610111	1282.8085	-0.53768	-0.00023046	3.4548	0.0014808	2.9171	0.0012503	428.61152438475887	85.535	1.703	83.315	82.937	84.64	-2.2204	0.073958	0.0011313	NaN	21.78	88	33	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216180			21140	1399	17245	17268							0.1784129154796119
ITRYDLLREML	11	Unmodified	_ITRYDLLREML_					0	0	0			REV__nc|ENSG00000150760|Q14185|DOCK1	REV__nc|ENSG00000150760|Q14185|DOCK1	MULTI-MSMS	OvCa9_classI_Rep3	3	474.93133544921875	3	474.930633	1421.77007	2.1726	0.0010318	-1.3253	-0.00062941	0.8473	0.00040241	474.9297967720246	64.298	0.96104	61.304	60.987	61.948	-2.9933					38	18	3	0	0	0	0.72472	1	2475	2475		19.263	2.0959	1	42535	+		21141	20202	17246	17269	23515	23515					0.07605617851095303
ITSARELHY	9	Unmodified	_ITSARELHY_					0	0	0		ZBTB16|p.S287R|1|0.45|ENSG00000109906|chr11:114064161-114064161|C/G|missense_variant;ZBTB16|p.S287N|1|0.33|ENSG00000109906|chr11:114064160-114064160|G/A|missense_variant;ENST00000541602.5_1_11:113934022-114057819:+|nuORF;ZBTB16|p.H648Qfs*2|1|0.09|ENSG00000109906|chr11:114250477-114250477|C/-|frameshift_variant;ENSG00000109906|ENST00000335953|ZBTB16	ZBTB16|p.S287R|1|0.45|ENSG00000109906|chr11:114064161-114064161|C/G|missense_variant	ZBTB16|p.S287R|1|0.45|ENSG00000109906|chr11:114064161-114064161|C/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	545.822998046875	2	545.288005	1088.56146	-1.3076	-0.00071299	-0.77406	-0.00042209	-2.0816	-0.0011351	545.7896135732535	85.581	0.45178	83.36	83.134	83.586	-2.2204					12	8	2	0	0	0	0.027462	1	5017	5017		44.117	6.9577	1	18378			21142	2741	17247	17270	23516	23516					0.020719573291898996
ITSARVIEL	9	Unmodified	_ITSARVIEL_					0	0	0			REV__tr|A0A553SRK7|A0A553SRK7_NIACISigmafactorregulatorC-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01280PE=4SV=1	REV__tr|A0A553SRK7|A0A553SRK7_NIACISigmafactorregulatorC-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01280PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.3016052246094	2	501.303124	1000.5917	-0.7967	-0.00039939	0.63541	0.00031853	-0.16129	-8.0855E-05	501.30331602589735	104.52	1.9398	102.4	102.01	103.95	-2.1192					90	35	4	0	0	0	0.10363	1	9460	9460		96.19	0.15683	1	367440	+		21143	30741	17248	17271	23517	23517					0.09142315994370165
ITSARVIEL	9	Unmodified	_ITSARVIEL_					0	0	0			REV__tr|A0A553SRK7|A0A553SRK7_NIACISigmafactorregulatorC-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01280PE=4SV=1	REV__tr|A0A553SRK7|A0A553SRK7_NIACISigmafactorregulatorC-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01280PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	501.303124	1000.5917	-0.04652	-2.3321E-05	-0.24023	-0.00012043	-0.28675	-0.00014375	501.3028698554628	103.86	2.1341	102.42	102.13	104.27	-1.4347	0.035421	-0.00099268	NaN	96.19	85	40	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	402170	+		21144	30741	17248	17271							0.09142315994370165
ITSARVIEL	9	Unmodified	_ITSARVIEL_					0	0	0			REV__tr|A0A553SRK7|A0A553SRK7_NIACISigmafactorregulatorC-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01280PE=4SV=1	REV__tr|A0A553SRK7|A0A553SRK7_NIACISigmafactorregulatorC-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01280PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	501.303124	1000.5917	-0.7967	-0.00039939	0.63541	0.00031853	-0.16129	-8.0855E-05	501.30331602589735	104.52	1.9398	102.4	102.01	103.95	-2.1192	0.017126	-0.00011475	NaN	96.19	90	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	367440	+		21145	30741	17248	17271							0.09142315994370165
ITSDMIEM	8	Unmodified	_ITSDMIEM_					0	0	0		ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	ENSG00000114030|ENST00000344337|KPNA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.2112731933594	2	470.211729	938.408905	0.76716	0.00036073	-2.1622	-0.0010167	-1.395	-0.00065596	470.21060850617636	112.48	1.7553	110.97	110.42	112.18	-1.5111					84	34	4	0	0	0	0.65582	1	10425	10425		52.299	5.5327	1	831100			21146	3008	17249	17272	23518	23518					-0.06276322454084493
ITSDPKNLP	9	Unmodified	_ITSDPKNLP_					0	0	0			REV__ENST00000550632.5_1_12:62654195-62749153:+|nuORF	REV__ENST00000550632.5_1_12:62654195-62749153:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	491.7992248535156	2	492.771657	983.528761	0.027582	1.3592E-05	2.3184	0.0011425	2.346	0.001156	492.77311718404866	107.44	0.20949	106.17	106.1	106.31	-1.267					5	3	2	0	0	0	0.027418	1	7636	7636		58.782	0	1	17938	+		21147	19308	17250	17273	23519	23519					0.036337502063247484
ITSFVRAMLRR	11	Unmodified	_ITSFVRAMLRR_					0	0	0		ENST00000442580.5_1_7:107953150-107968896:-|nuORF	ENST00000442580.5_1_7:107953150-107968896:-|nuORF	ENST00000442580.5_1_7:107953150-107968896:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	450.5980529785156	3	450.599329	1348.77616	-0.36922	-0.00016637	-2.538	-0.0011436	-2.9072	-0.00131	450.5981883929496	75.04	3.3509	72.629	71.944	75.295	-2.4106					204	65	5	0	0	0	0.6112	1	3746	3746		43.651	1.4082	1	1091400			21148	11943	17251	17274	23520	23520					0.11572180873281468
ITSGKAVGVAV	11	Unmodified	_ITSGKAVGVAV_					0	0	0		nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3;ATP2A3|p.S554Qfs*38|1|0.26|ENSG00000074370|chr17:3941540-3941540|A/-|frameshift_variant	nc|ENSG00000074370|Q93084-4|ATP2A3	nc|ENSG00000074370|Q93084-4|ATP2A3	MULTI-MSMS	OvCa9_classI_Rep2	2	501.303466796875	2	501.303124	1000.5917	-0.60395	-0.00030276	1.3791	0.00069136	0.77517	0.0003886	501.3036625968001	45.316	1.7944	42.606	42.199	43.993	-2.7097					88	35	4	0	0	0	0.69099	1	2657	2657		32.751	0.79567	1	439250			21149	1511	17252	17275	23521	23521					0.09142315994370165
ITSGSNKCIIE	11	Unmodified	_ITSGSNKCIIE_					0	0	0			REV__ENST00000532146.1_1_11:47504033-47505052:-|nuORF	REV__ENST00000532146.1_1_11:47504033-47505052:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	582.8018798828125	2	582.800088	1163.58562	1.1315	0.00065944	0.99393	0.00057926	2.1254	0.0012387	582.8006818033648	147.53	6.6763	147.53	147.01	153.69	0					349	139	4	0	0	0	0.63561	1	17238	17238		41.427	0.64845	1	20317000	+		21150	27228	17253	17276	23522	23522					0.010374297005455446
ITSIKFRKV	9	Unmodified	_ITSIKFRKV_					0	0	0		tr|A0A7D6VS92|A0A7D6VS92_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10075PE=4SV=1	tr|A0A7D6VS92|A0A7D6VS92_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10075PE=4SV=1	tr|A0A7D6VS92|A0A7D6VS92_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10075PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.8270874023438	2	546.350409	1090.68626	0.52904	0.00028904	-0.69614	-0.00038034	-0.16711	-9.1298E-05	546.3499653899964	105.37	2.0144	105.37	104.66	106.67	0					77	45	2	0	0	0	0.027462	1	11785	11785		27.882	5.9224	1	1315400			21151	34999	17254	17277	23523	23523					0.14454874536363604
ITSKKKHPE	9	Unmodified	_ITSKKKHPE_					0	0	0		ENST00000486274.5_1_3:99980342-100042509:+|nuORF;nc|ENSG00000036054|Q9NUY8-2|TBC1D23;ENSG00000036054|ENST00000394144|TBC1D23;ENST00000471273.1_1_3:100034907-100042509:+|nuORF	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	533.7991333007812	2	534.314023	1066.61349	0.81627	0.00043614	2.5598	0.0013678	3.3761	0.0018039	534.3152029241713	89.279	1.4354	87.911	87.625	89.061	-1.3676					60	28	3	0	0	0	0.027462	1	7897	7897		27.882	4.8398	1	177620			21152	1086	17255	17278	23524	23524					0.08285120742948493
ITSKTSQAL	9	Unmodified	_ITSKTSQAL_					0	0	0		Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|74|2|sense	Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|74|2|sense	Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|74|2|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	474.77191162109375	2	474.771657	947.528761	-2.2434	-0.0010651	3.7198	0.0017661	1.4764	0.00070095	474.77329814512956	37.51	1.38	34.8	34.287	35.667	-2.7097					69	27	4	0	0	0	0.53483	1	1710	1710		39.253	0.44669	1	277560			21153	14376	17256	17279	23525	23525					0.05289750206316057
ITSKWSGLKP	10	Unmodified	_ITSKWSGLKP_					0	0	0		nc|ENSG00000124092|Q8NI51-2|CTCFL	nc|ENSG00000124092|Q8NI51-2|CTCFL	nc|ENSG00000124092|Q8NI51-2|CTCFL	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.8343505859375	2	558.824224	1115.63389	1.2743	0.00071212	-1.5015	-0.00083909	-0.22721	-0.00012697	559.3255422567576	132.04	0.64879	132.04	131.67	132.32	0					23	13	2	0	0	0	0.026548	1	15310	15310		38.754	4.5811	1	85921			21154	14996	17257	17280	23526	23526					0.08070291402736984
ITSPEHYI	8	Unmodified	_ITSPEHYI_					0	0	0			REV__nc|ENSG00000155744|Q8IXS8|HYCC2	REV__nc|ENSG00000155744|Q8IXS8|HYCC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.717529296875	2	480.245275	958.475997	-0.3167	-0.00015209	-2.7871	-0.0013385	-3.1038	-0.0014906	480.2437910345634	38.859	0.4016	38.859	38.705	39.107	0					12	8	2	0	0	0	0.028476	1	2232	2232		26.796	4.8362	1	138700	+		21155	20437	17258	17281	23527	23527					-0.004902078564896328
ITSRHLRDRL	10	Unmodified	_ITSRHLRDRL_					0	0	0		tr|A0A7D6VXS5|A0A7D6VXS5_9CLOTLargeribosomalsubunitassemblyfactorBipAOS=ClostridiumintestinaleOX=36845GN=typAPE=3SV=1	tr|A0A7D6VXS5|A0A7D6VXS5_9CLOTLargeribosomalsubunitassemblyfactorBipAOS=ClostridiumintestinaleOX=36845GN=typAPE=3SV=1	tr|A0A7D6VXS5|A0A7D6VXS5_9CLOTLargeribosomalsubunitassemblyfactorBipAOS=ClostridiumintestinaleOX=36845GN=typAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	422.9200134277344	3	422.917827	1265.73165	-0.455	-0.00019243	3.4715	0.0014682	3.0165	0.0012757	422.9192596252898	76.584	2.3986	73.645	73.128	75.526	-2.9389					139	49	4	0	0	0	0.47131	1	6082	6082		58.246	8.2127	1	766350			21156	35300	17259	17282	23528	23528					0.10941493051473117
ITSSNKKDF	9	Unmodified	_ITSSNKKDF_					0	0	0		ENST00000469874.5_1_3:45867808-45883491:-|nuORF	ENST00000469874.5_1_3:45867808-45883491:-|nuORF	ENST00000469874.5_1_3:45867808-45883491:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2947998046875	2	520.274564	1038.53457	-0.33975	-0.00017676	1.6324	0.00084931	1.2927	0.00067254	520.2752828330904	57.373	1.1006	57.373	57.093	58.194	0					55	23	4	0	0	0	0.027455	1	4817	4817		42.396	11.892	1	2688600			21157	12352	17260	17283	23529	23529					0.016848487179913718
ITSSNKKDF	9	Unmodified	_ITSSNKKDF_					0	0	0		ENST00000469874.5_1_3:45867808-45883491:-|nuORF	ENST00000469874.5_1_3:45867808-45883491:-|nuORF	ENST00000469874.5_1_3:45867808-45883491:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	520.274564	1038.53457	-0.078527	-4.0855E-05	-3.2709	-0.0017018	-3.3494	-0.0017426	520.272004990514	60.854	0.55014	57.424	57.244	57.794	-3.43	0.025523	-0.004364	NaN	56.721	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20520			21158	12352	17260	17283							0.016848487179913718
ITSVLQDHLIK	11	Unmodified	_ITSVLQDHLIK_					0	0	0		nc|ENSG00000198862|O94822-3|LTN1;ENSG00000198862|ENST00000361371|LTN1;LTN1|p.F413Lfs*7|1|0.45|ENSG00000198862|chr21:28969538-28969538|A/-|frameshift_variant;nc|ENSG00000198862|O94822-2|LTN1	nc|ENSG00000198862|O94822-3|LTN1	nc|ENSG00000198862|O94822-3|LTN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	422.9198303222656	3	422.918722	1265.73434	-0.455	-0.00019243	1.355	0.00057305	0.89999	0.00038062	422.9192596252898	76.584	2.3986	73.645	73.128	75.526	-2.9389					139	49	4	0	0	0	0.68709	1	6071	6071		34.087	3.9474	1	766350			21159	15262	17261	17284	23530	23530					0.11209903665758247
ITSVYLQLK	9	Unmodified	_ITSVYLQLK_					0	0	0		nc|ENSG00000198003|A5D8V7-2|ODAD3;ENSG00000198003|ENST00000356392|ODAD3	nc|ENSG00000198003|A5D8V7-2|ODAD3	nc|ENSG00000198003|A5D8V7-2|ODAD3	MULTI-MSMS	OvCa99_classI_Rep5	1	532.8224487304688	2	532.82115	1063.62775	2.4623	0.001312	0.24624	0.0001312	2.7085	0.0014432	532.8211055758045	106.38	0.83376	106.38	106.1	106.93	0					48	18	4	0	0	0	0.55011	1	11971	11971		37.812	5.8567	1	2348800			21160	8772	17262	17285	23531	23531					0.09847773171213703
ITTGTGILV	9	Unmodified	_ITTGTGILV_					0	0	0			REV__ENSG00000156298|ENST00000378482|TSPAN7	REV__ENSG00000156298|ENST00000378482|TSPAN7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	437.2278747558594	2	437.765843	873.517133	-0.2578	-0.00011285	0.71251	0.00031191	0.45471	0.00019906	437.7662934954016	91.611	0.70808	89.068	88.605	89.313	-2.5425					18	13	2	0	0	0	0.027462	1	7912	7912		31.955	0	1	20533	+		21161	16138	17263	17286	23532	23532					0.07531553183014239
ITTHPLPLL	9	Unmodified	_ITTHPLPLL_					0	0	0		nc|ENSG00000188655|P60153|RNASE9;ENSG00000188655|ENST00000404716|RNASE9	nc|ENSG00000188655|P60153|RNASE9	nc|ENSG00000188655|P60153|RNASE9	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.81121826171875	2	502.810585	1003.60662	-1.9635	-0.00098725	1.532	0.0007703	-0.43148	-0.00021695	502.81109338443866	125	1.3243	123.61	123.18	124.5	-1.3908					63	25	4	0	0	0	0.29717	1	11866	11866		63.306	5.495	1	89989			21162	8490	17264	17287	23533	23533					0.10495807862389483
ITTKGRFFF	9	Unmodified	_ITTKGRFFF_					0	0	0		ENST00000231512.4_1_5:133292608-133295222:-|nuORF	ENST00000231512.4_1_5:133292608-133295222:-|nuORF	ENST00000231512.4_1_5:133292608-133295222:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.798095703125	2	558.813659	1115.61277	0.52715	0.00029458	-4.4108	-0.0024648	-3.8837	-0.0021702	558.8108480213076	79.395	1.881	76.643	76.179	78.06	-2.7514					92	38	4	0	0	0	0.027433	1	6596	6596		26.693	0	1	329560			21163	9725	17265	17288	23534	23534					0.05958326093900723
ITTKHDEV	8	Unmodified	_ITTKHDEV_					0	0	0		ENST00000581302.5_1_18:21033283-21057068:+|nuORF;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3	ENST00000581302.5_1_18:21033283-21057068:+|nuORF	ENST00000581302.5_1_18:21033283-21057068:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	471.7487487792969	2	471.748182	941.481811	-0.24714	-0.00011659	-0.23144	-0.00010918	-0.47857	-0.00022577	471.7479787376128	116.81	1.2877	115.76	115.49	116.78	-1.0414					55	25	3	0	0	0	0.62474	1	8741	8741		58.782	16.386	1	307460			21164	2199	17266	17289	23535	23535					0.008728906551937143
ITTLCKHR	8	Unmodified	_ITTLCKHR_					0	0	0		ENST00000457348.5_1_1:203269502-203269697:-|nuORF	ENST00000457348.5_1_1:203269502-203269697:-|nuORF	ENST00000457348.5_1_1:203269502-203269697:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.2709045410156	2	486.276386	970.53822	2.0429	0.0009934	-4.3407	-0.0021108	-2.2978	-0.0011174	486.2740050127614	85.082	0.53848	85.082	84.841	85.38	0					16	12	2	0	0	0	0.028476	1	8915	8915		30.504	0	1	315290			21165	12122	17267	17290	23536	23536					0.051772400108802685
ITTPRQPQ	8	Unmodified	_ITTPRQPQ_					0	0	0			REV__ENST00000495113.5_1_2:219146832-219157233:-|nuORF	REV__ENST00000495113.5_1_2:219146832-219157233:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.7314147949219	2	470.764166	939.513779	-0.38235	-0.00018	1.0369	0.00048814	0.65457	0.00030815	470.7642385829159	55.277	0.15375	51.983	51.906	52.059	-3.2944					4	2	2	0	0	0	0.028476	1	3476	3476		33.516	19.378	1	8303.8	+		21166	26740	17268	17291	23537	23537					0.04160303129003751
ITTQHWLGL	9	Unmodified	_ITTQHWLGL_					0	0	0		ENSG00000080166|ENST00000377028|DCT;nc|ENSG00000080166|P40126-2|DCT;ENST00000472871.1_1_13:95120883-95131509:-|nuORF	ENSG00000080166|ENST00000377028|DCT	ENSG00000080166|ENST00000377028|DCT	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.2578735351562	2	534.795466	1067.57638	-0.84623	-0.00045256	0.75441	0.00040346	-0.091815	-4.9102E-05	534.7955863493071	107.3	0.77702	106.99	106.72	107.5	-0.30836					23	15	2	0	0	0	0.027448	1	10032	10032		44.117	3.5442	1	48855			21167	1628	17269	17292	23538	23538					0.045294491971844764
ITTRIKEAK	9	Unmodified	_ITTRIKEAK_					0	0	0			REV__tr|A0A7D7A570|A0A7D7A570_9CLOTNucleoid-associatedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04840PE=4SV=1	REV__tr|A0A7D7A570|A0A7D7A570_9CLOTNucleoid-associatedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04840PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.803955078125	2	530.329673	1058.64479	-1.1189	-0.00059341	4.0052	0.0021241	2.8862	0.0015306	530.3331771864146	105.89	0.40388	103.87	103.6	104	-2.0161					10	7	2	0	0	0	0.027462	1	9620	9620		19.104	0	1	12880	+		21168	32627	17270	17293	23539	23539					0.11781693777038527
ITTRRLQGHL	10	Unmodified	_ITTRRLQGHL_					0	0	0		ENST00000568975.5_1_16:68349943-68358592:+|nuORF	ENST00000568975.5_1_16:68349943-68358592:+|nuORF	ENST00000568975.5_1_16:68349943-68358592:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8563232421875	2	597.856921	1193.69929	-3.1766	-0.0018991	2.2834	0.0013652	-0.89312	-0.00053396	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.72319	1	15117	15117		27.882	0	1	436470			21169	13877	17271	17294	23540	23540					0.11018705648484683
ITTVLHQPPQ	10	Unmodified	_ITTVLHQPPQ_					0	0	0			REV__nc|ENSG00000102606|Q14155|ARHGEF7	REV__nc|ENSG00000102606|Q14155|ARHGEF7	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.2765502929688	2	567.319306	1132.62406	2.6542	0.0015058	3.051	0.0017309	5.7052	0.0032367	567.3207591934674	108.13	0.17088	108.13	107.99	108.16	0					5	3	2	0	0	0	0.026849	1	12199	12199		19.104	4.2386	1	120330	+		21170	28775	17272	17295	23541	23541					0.06305103397380662
ITTVQHAIL	9	Unmodified	_ITTVQHAIL_					0	0	0		ENSG00000186566|ENST00000591680|GPATCH8;nc|ENSG00000186566|Q9UKJ3-2|GPATCH8	ENSG00000186566|ENST00000591680|GPATCH8	ENSG00000186566|ENST00000591680|GPATCH8	MULTI-MSMS	OvCa99_classI_Rep5	1	498.2992858886719	2	498.297842	994.581131	1.9579	0.00097561	-0.099268	-4.9465E-05	1.8586	0.00092615	498.2978202110871	100.07	1.2441	100.07	99.736	100.98	0					57	29	2	0	0	0	0.074342	1	11056	11056		104.75	10.74	1	24964000			21171	8347	17273	17296	23542	23542					0.0836233333996006
ITVARYVAE	9	Unmodified	_ITVARYVAE_					0	0	0			REV__ENSG00000151640|ENST00000338492|DPYSL4	REV__ENSG00000151640|ENST00000338492|DPYSL4	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.30804443359375	2	511.287474	1020.5604	2.7995	0.0014313	-1.0161	-0.00051951	1.7834	0.00091182	511.2868589518633	107.82	0.63591	107.82	107.6	108.24	0					15	14	2	0	0	0	0.027462	1	12221	12221		40.778	0	1	443130	+		21172	20244	17274	17297	23543	23543					0.05093742960275449
ITVDASRPQ	9	Unmodified	_ITVDASRPQ_					0	0	0		ENSG00000119737|ENST00000394705|GPR75	ENSG00000119737|ENST00000394705|GPR75	ENSG00000119737|ENST00000394705|GPR75	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.324462890625	2	493.766906	985.519259	-0.52758	-0.0002605	-3.4154	-0.0016864	-3.943	-0.0019469	493.76657933705866	80.268	0.39653	77.557	77.318	77.714	-2.7106					11	7	2	0	0	0	0.027441	1	6565	6565		40.778	6.6056	1	12937			21173	3392	17275	17298	23544	23544					0.025919819208070294
ITVDNLRRLKR	11	Unmodified	_ITVDNLRRLKR_					0	0	0			REV__nc|ENSG00000123965|A8MQ11|PMS2P5	REV__nc|ENSG00000123965|A8MQ11|PMS2P5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.7918701171875	3	461.956282	1382.84702	-1.5151	-0.0006999	0.88899	0.00041067	-0.62609	-0.00028923	461.95677537247155	54.51	0.81967	51.262	50.979	51.798	-3.2474					37	15	4	0	0	0	0.026302	1	3418	3418		12.433	0	1	67268	+		21174	28828	17276	17299	23545	23545					0.17090597182436795
ITVDNLRRLKR	11	Unmodified	_ITVDNLRRLKR_					0	0	0			REV__nc|ENSG00000123965|A8MQ11|PMS2P5	REV__nc|ENSG00000123965|A8MQ11|PMS2P5	MULTI-MATCH	OvCa9_classI_Rep2	2		3	461.956282	1382.84702	-1.1996	-0.00055416	0.86865	0.00040128	-0.33095	-0.00015288	461.95665147684684	53.992	0.94673	51.178	50.925	51.872	-2.8139	-0.042201	-7.7098E-06	NaN	12.433	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62628	+		21175	28828	17276	17299							0.17090597182436795
ITVDRHGFI	9	Unmodified	_ITVDRHGFI_					0	0	0		nc|ENSG00000009694|Q9UKZ4-2|TENM1;ENSG00000009694|ENST00000371130|TENM1;TENM1|p.Y2196*|1|0.08|ENSG00000009694|chrX:124384322-124384322|A/-|frameshift_variant	nc|ENSG00000009694|Q9UKZ4-2|TENM1	nc|ENSG00000009694|Q9UKZ4-2|TENM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.7734375	2	529.293091	1056.57163	2.2485	0.0011901	0.25879	0.00013697	2.5073	0.0013271	529.2927454915515	96.564	0.41677	96.564	96.378	96.795	0					14	9	2	0	0	0	0.027462	1	10572	10572		34.173	1.3601	1	183830			21176	930	17277	17300	23546	23546					0.04560565054430299
ITVELAIAVL	10	Unmodified	_ITVELAIAVL_					0	0	0		ENSG00000128271|ENST00000337539|ADORA2A	ENSG00000128271|ENST00000337539|ADORA2A	ENSG00000128271|ENST00000337539|ADORA2A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.829345703125	2	521.33135	1040.64815	-1.2113	-0.0006315	4.4212	0.0023049	3.2099	0.0016734	521.3339202168581	106.45	0.92959	104.43	104.1	105.03	-2.0161					21	17	2	0	0	0	0.026523	1	9746	9746		32.812	0	1	35428			21177	3871	17278	17301	23547	23547					0.12944943831030287
ITVEPRND	8	Unmodified	_ITVEPRND_					0	0	0			REV__nc|ENSG00000261934|Q9Y5G4-2|PCDHGA9	REV__nc|ENSG00000261934|Q9Y5G4-2|PCDHGA9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.2899475097656	2	472.245806	942.47706	-0.085248	-4.0258E-05	0.87691	0.00041412	0.79166	0.00037386	472.24609900852545	99.759	0.55235	97.433	97.263	97.816	-2.3253					15	10	2	0	0	0	0.028476	1	8903	8903		38.806	0	1	22048	+		21178	29182	17279	17302	23548	23548					0.0035200651242348613
ITVESSLKEI	10	Unmodified	_ITVESSLKEI_					0	0	0			REV__tr|A0A553SJT4|A0A553SJT4_NIACIPeptidaseC39-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_17385PE=4SV=1	REV__tr|A0A553SJT4|A0A553SJT4_NIACIPeptidaseC39-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_17385PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	559.81396484375	2	559.818804	1117.62306	-0.97773	-0.00054735	-4.4755	-0.0025054	-5.4532	-0.0030528	559.8160584775942	134.25	2.5628	133.13	132.52	135.08	-1.1226					125	51	4	0	0	0	0.47142	1	10851	10851		58.23	1.5089	1	225320	+		21179	30042	17280	17303	23549	23549					0.06894844237808684
ITVFREDLV	9	Unmodified	_ITVFREDLV_					0	0	0		ENST00000554377.1_1_14:50116973-50120958:-|nuORF;nc|ENSG00000100479|P56282-2|POLE2;nc|ENSG00000100479|P56282-3|POLE2;ENSG00000100479|ENST00000216367|POLE2	ENST00000554377.1_1_14:50116973-50120958:-|nuORF	ENST00000554377.1_1_14:50116973-50120958:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.3073120117188	2	546.308406	1090.60226	3.182	0.0017383	-4.0989	-0.0022392	-0.91691	-0.00050092	546.3060263921274	133.26	1.2737	131.73	131.41	132.69	-1.5257					71	25	4	0	0	0	0.29519	1	12859	12859		63.534	1.4264	1	187220			21180	2074	17281	17304	23550	23550					0.060582986487816015
ITVGKEIRF	9	Unmodified	_ITVGKEIRF_					0	0	0			REV__tr|A0A7D7A591|A0A7D7A591_9CLOTYegS/Rv2252/BmrUfamilylipidkinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05050PE=3SV=1	REV__tr|A0A7D7A591|A0A7D7A591_9CLOTYegS/Rv2252/BmrUfamilylipidkinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05050PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	531.81591796875	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.62352	1	14040	14040		29.15	1.2673	1	166960	+		21181	32630	17282	17305	23551	23551					0.09498308748334239
ITVKDGKTLN	10	Unmodified	_ITVKDGKTLN_					0	0	0		ENSG00000144381|ENST00000388968|HSPD1;ENST00000429127.2_1_12:8167969-8168583:+|nuORF;ENST00000503199.1_1_5:21882861-21883359:+|nuORF;ENST00000388967.3_1_3:36809324-36810203:-|nuORF	ENSG00000144381|ENST00000388968|HSPD1	ENSG00000144381|ENST00000388968|HSPD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.8218383789062	2	544.819138	1087.62372	-0.062377	-3.3984E-05	3.0933	0.0016853	3.0309	0.0016513	544.8205827812225	90.078	1.42	87.503	87.1	88.52	-2.575					85	27	5	0	0	0	0.19075	1	7748	7748		95.815	20.772	1	620420			21182	5147	17283	17306	23552	23552					0.08341683677554101
ITVKPKKVNT	10	Unmodified	_ITVKPKKVNT_					0	0	0			REV__ENSG00000177084|ENST00000320574|POLE	REV__ENSG00000177084|ENST00000320574|POLE	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.3309936523438	2	564.360973	1126.70739	3.0976	0.0017481	-0.37931	-0.00021407	2.7183	0.0015341	564.3607539313009	96.232	0.21368	96.232	96.082	96.296	0					8	4	2	0	0	0	0.02717	1	10513	10513		17.468	2.6031	1	244930	+		21183	21984	17284	17307	23553	23553					0.14910839845242663
ITVLFIWTI	9	Unmodified	_ITVLFIWTI_					0	0	0		tr|A0A7D6VMF8|A0A7D6VMF8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13620PE=4SV=1	tr|A0A7D6VMF8|A0A7D6VMF8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13620PE=4SV=1	tr|A0A7D6VMF8|A0A7D6VMF8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13620PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.7578735351562	2	553.336436	1104.65832	0.7115	0.0003937	1.3854	0.00076659	2.0969	0.0011603	553.3369589784699	151.96	0.80148	151.96	151.55	152.36	0					26	16	2	0	0	0	0.027462	1	17810	17810		45.952	15.448	1	119150			21184	34655	17285	17308	23554	23554					0.11017551556278704
ITVLSCPTIH	10	Unmodified	_ITVLSCPTIH_					0	0	0			REV__ENST00000598424.5_1_19:17581379-17594898:+|nuORF	REV__ENST00000598424.5_1_19:17581379-17594898:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.6369018554688	2	542.296985	1082.57942	0.08744	4.7419E-05	3.1729	0.0017206	3.2603	0.0017681	542.2983827493886	37.542	1.391	34.65	34.442	35.833	-2.8925					45	27	2	0	0	0	0.026994	1	1431	1431		13.454	0	1	136400	+		21185	28009	17286	17309	23555	23555					0.04142956259670427
ITVMIVIYL	9	Unmodified	_ITVMIVIYL_					0	0	0			REV__ENSG00000130368|ENST00000674077|MAS1	REV__ENSG00000130368|ENST00000674077|MAS1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.2724609375	2	532.824846	1063.63514	-0.31698	-0.00016889	3.5903	0.001913	3.2733	0.0017441	532.8264249280453	89.695	0.79843	87.12	86.752	87.551	-2.575					24	15	2	0	0	0	0.027462	1	7696	7696		26.796	0	1	30259	+		21186	18944	17287	17310	23556	23556					0.10586789447279443
ITVNRSPI	8	Unmodified	_ITVNRSPI_					0	0	0		tr|A0A7D6VTH4|A0A7D6VTH4_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_21045PE=4SV=1	tr|A0A7D6VTH4|A0A7D6VTH4_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_21045PE=4SV=1	tr|A0A7D6VTH4|A0A7D6VTH4_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_21045PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.26904296875	2	450.269084	898.523616	-0.59426	-0.00026758	0.24146	0.00010872	-0.3528	-0.00015886	450.2691842813432	72.264	1.3123	68.808	68.364	69.676	-3.4563					84	26	5	0	0	0	0.50674	1	5546	5546		76.847	2.8719	1	1672500			21187	35117	17288	17311	23557	23557					0.07029491134380805
ITVPPLMIPT	10	Unmodified	_ITVPPLMIPT_					0	0	0		nc|ENSG00000196116|Q8NHU6-2|TDRD7;TDRD7|p.Q1006Dfs*30|1|0.14|ENSG00000196116|chr9:97487271-97487272|-/GATT|frameshift_variant;ENSG00000196116|ENST00000355295|TDRD7	nc|ENSG00000196116|Q8NHU6-2|TDRD7	nc|ENSG00000196116|Q8NHU6-2|TDRD7	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.7763671875	2	541.319928	1080.6253	2.1988	0.0011902	3.4936	0.0018911	5.6923	0.0030814	541.3216129676376	84.052	0.50463	84.052	83.757	84.261	0					13	11	2	0	0	0	0.026891	1	8788	8788		47.657	3.5405	1	117660			21188	8563	17289	17312	23558	23558					0.08821601441900384
ITVPPPGK	8	Unmodified	_ITVPPPGK_					0	0	0		ENST00000513975.5_1_4:54244032-54306933:+|nuORF	ENST00000513975.5_1_4:54244032-54306933:+|nuORF	ENST00000513975.5_1_4:54244032-54306933:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	404.7515563964844	2	404.749996	807.485439	1.0126	0.00040986	-0.52194	-0.00021126	0.49069	0.00019861	404.7495905658106	42.857	0.85673	42.857	42.496	43.353	0					44	19	5	0	0	0	0.75241	1	2789	2789		25.45	3.7478	1	1006600			21189	13023	17290	17313	23559	23559					0.07399605219711702
ITVSCRPVL	9	Unmodified	_ITVSCRPVL_					0	0	0			REV__nc|ENSG00000203797|Q99489-2|DDO	REV__nc|ENSG00000203797|Q99489-2|DDO	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.287109375	2	494.28642	986.558287	1.0873	0.00053743	-1.2009	-0.00059358	-0.11361	-5.6154E-05	494.2857084115825	84.709	2.1185	82.046	81.458	83.577	-2.6629					122	43	4	0	0	0	0.27546	1	7123	7123		65.803	0	1	1920500	+		21190	23113	17291	17314	23560	23560					0.0644699095081478
ITVSRILLI	9	Unmodified	_ITVSRILLI_					0	0	0		tr|A0A553SNU1|A0A553SNU1_NIACICDP-diacylglycerol--glycerol-3-phosphate3-phosphatidyltransferaseOS=NialliacirculansOX=1397GN=pgsAPE=3SV=1	tr|A0A553SNU1|A0A553SNU1_NIACICDP-diacylglycerol--glycerol-3-phosphate3-phosphatidyltransferaseOS=NialliacirculansOX=1397GN=pgsAPE=3SV=1	tr|A0A553SNU1|A0A553SNU1_NIACICDP-diacylglycerol--glycerol-3-phosphate3-phosphatidyltransferaseOS=NialliacirculansOX=1397GN=pgsAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.2791137695312	2	514.347335	1026.68012	0.60002	0.00030862	1.3696	0.00070443	1.9696	0.001013	514.3479212768287	141.72	0.54779	141.72	141.39	141.93	0					25	10	3	0	0	0	0.027433	1	16539	16539		64.207	14.766	1	121640			21191	33962	17292	17315	23561	23561					0.16784356304856374
ITVTKKLD	8	Unmodified	_ITVTKKLD_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa9_classI_Rep2	2	459.2464599609375	2	459.286943	916.559333	-0.72072	-0.00033102	-0.21654	-9.9453E-05	-0.93726	-0.00043047	459.28677963496824	61.123	0.84244	58.359	57.982	58.824	-2.7641					26	15	2	0	0	0	0.028476	1	4543	4543		24.203	0	1	22044	+		21192	28942	17293	17316	23562	23562					0.09771528591375045
ITWLLGNSME	10	Oxidation (M)	_ITWLLGNSM(Oxidation (M))E_		ITWLLGNSM(1)E		ITWLLGNSM(70)E	0	0	1		ENSG00000109943|ENST00000227348|CRTAM	ENSG00000109943|ENST00000227348|CRTAM	ENSG00000109943|ENST00000227348|CRTAM	MULTI-MSMS	OvCa99_classI_Rep5	1	590.28369140625	2	590.289356	1178.56416	1.2771	0.00075388	-4.1475	-0.0024482	-2.8704	-0.0016944	590.2866445859623	143.86	0.64343	143.86	143.61	144.26	0					20	12	2	0	0	0	0.39172	1	16834	16834		69.628	9.224	1	483350			21193	2744	17294	17317	23563	23563		89			-0.017979553281975313
ITWSQADRE	9	Unmodified	_ITWSQADRE_					0	0	0			REV__nc|ENSG00000166947|P16452-3|EPB42	REV__nc|ENSG00000166947|P16452-3|EPB42	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.3178100585938	2	553.26727	1104.51999	1.18	0.00065287	-2.5294	-0.0013994	-1.3494	-0.00074657	553.7668655298015	83.224	0.30049	83.224	83.035	83.335	0					9	6	2	0	0	0	0.027462	1	8638	8638		37.159	24.952	1	69205	+		21194	21241	17295	17318	23564	23564					-0.028092234301539065
ITYKTRSK	8	Unmodified	_ITYKTRSK_					0	0	0			REV__ENST00000491898.5_1_6:43023672-43027146:-|nuORF	REV__ENST00000491898.5_1_6:43023672-43027146:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.84588623046875	2	498.795466	995.57638	1.0979	0.00054761	-1.29	-0.00064346	-0.19217	-9.5853E-05	498.79470505247343	85.731	0.89309	83.085	82.8	83.693	-2.6463					32	17	2	0	0	0	0.028476	1	7221	7221		15.642	0	1	104480	+		21195	18110	17296	17319	23565	23565					0.07841449197189831
IVAAGTLDVI	10	Unmodified	_IVAAGTLDVI_					0	0	0		tr|A0A7D6VRR0|A0A7D6VRR0_9CLOTUvrABCsystemproteinAOS=ClostridiumintestinaleOX=36845GN=uvrAPE=3SV=1	tr|A0A7D6VRR0|A0A7D6VRR0_9CLOTUvrABCsystemproteinAOS=ClostridiumintestinaleOX=36845GN=uvrAPE=3SV=1	tr|A0A7D6VRR0|A0A7D6VRR0_9CLOTUvrABCsystemproteinAOS=ClostridiumintestinaleOX=36845GN=uvrAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.27447509765625	2	486.292225	970.569897	0.079239	3.8533E-05	1.2842	0.00062448	1.3634	0.00066301	486.291561580986	78.214	1.1449	75.397	74.922	76.067	-2.8165					47	23	4	0	0	0	0.02649	1	6359	6359		71.296	3.802	1	74629			21196	34950	17297	17320	23566	23566					0.08343511245789159
IVADNGDVN	9	Unmodified	_IVADNGDVN_					0	0	0			REV__tr|A0A7D6VQ73|A0A7D6VQ73_9CLOTAsp23/Gls24familyenvelopestressresponseproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14495PE=3SV=1	REV__tr|A0A7D6VQ73|A0A7D6VQ73_9CLOTAsp23/Gls24familyenvelopestressresponseproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14495PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.7776184082031	2	458.722164	915.429775	-1.0489	-0.00048115	1.4076	0.00064571	0.35873	0.00016456	458.72263956387053	54.237	0.76867	50.99	50.619	51.388	-3.2474					22	14	2	0	0	0	0.027247	1	3388	3388		60.118	0	1	32244	+		21197	31303	17298	17321	23567	23567					-0.03132272758568888
IVAEIIKKV	9	Unmodified	_IVAEIIKKV_					0	0	0		nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1	nc|ENSG00000017260|P98194-3|ATP2C1	nc|ENSG00000017260|P98194-3|ATP2C1	MULTI-MSMS	OvCa9_classI_Rep3	3	506.8406982421875	2	506.841885	1011.66922	0.20474	0.00010377	-0.6526	-0.00033076	-0.44786	-0.00022699	506.8414138702273	110.62	1.4666	109.48	109.19	110.66	-1.1444					67	28	3	0	0	0	0.21231	1	7998	7998		74.255	2.3776	1	153370			21198	14865	17299	17322	23568	23568					0.16384953930571555
IVAESLQQV	9	Unmodified	_IVAESLQQV_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	OvCa99_classI_Rep5	1	493.7814025878906	2	493.779482	985.544411	0.83088	0.00041027	1.3381	0.00066071	2.1689	0.001071	493.78007496366774	90.881	0.51434	90.881	90.698	91.213	0					26	12	3	0	0	0	0.022645	1	9761	9761		143.89	33.767	1	2821300			21199	3094	17300	17323	23569	23569					0.05106036723395846
IVAFASFLIV	10	Unmodified	_IVAFASFLIV_					0	0	0		tr|A0A7D6VUY9|A0A7D6VUY9_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_03430PE=4SV=1	tr|A0A7D6VUY9|A0A7D6VUY9_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_03430PE=4SV=1	tr|A0A7D6VUY9|A0A7D6VUY9_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_03430PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3306884765625	2	540.328611	1078.64267	-1.2676	-0.00068491	4.0333	0.0021793	2.7657	0.0014944	540.3307152267141	139.22	4.0818	138.16	137	141.08	-1.0595					200	82	3	0	0	0	0.7759	1	11373	11373		21.96	0	1	55828			21200	35203	17301	17324	23570	23570					0.1064926503922834
IVAFGAVFPV	10	Unmodified	_IVAFGAVFPV_					0	0	0			REV__ENSG00000136856|ENST00000373371|SLC2A8	REV__ENSG00000136856|ENST00000373371|SLC2A8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.3140869140625	2	510.299853	1018.58515	0.15136	7.724E-05	-1.6778	-0.00085617	-1.5264	-0.00077893	510.29870137304164	115.3	0.79272	113.9	113.67	114.46	-1.3977					23	15	2	0	0	0	0.026839	1	10710	10710		19.36	0	1	10571	+		21201	19412	17302	17325	23571	23571					0.07660422833669145
IVAFTILSKFI	11	Unmodified	_IVAFTILSKFI_					0	0	0			REV__tr|A0A7D6VSE9|A0A7D6VSE9_9CLOTBranched-chainaminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06255PE=4SV=1	REV__tr|A0A7D6VSE9|A0A7D6VSE9_9CLOTBranched-chainaminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06255PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	626.3920288085938	2	626.389199	1250.76385	-5.6586	-0.0035445	2.2827	0.0014298	-3.3759	-0.0021146	626.8920656002647	163.54	1.1058	163.31	162.97	164.08	-0.22697					56	36	2	0	0	0	0.72511	1	16641	16641		14.137	0	1	65883	+		21202	31496	17303	17326	23572	23572					0.14849467681915485
IVAGILYLLL	10	Unmodified	_IVAGILYLLL_					0	0	0			REV__ENSG00000090520|ENST00000265028|DNAJB11	REV__ENSG00000090520|ENST00000265028|DNAJB11	MULTI-MSMS	OvCa99_classI_Rep5	1	544.8621826171875	2	544.359911	1086.70527	0.80347	0.00043738	1.1955	0.00065078	1.999	0.0010882	544.3604048753967	157.41	4.9209	157.41	156.9	161.82	0					252	99	4	0	0	0	0.49566	1	18712	18712		54.765	1.4132	1	913740	+		21203	17224	17304	17327	23573	23573					0.1653841110742178
IVAGSLITK	9	Unmodified	_IVAGSLITK_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	OvCa9_classI_Rep4_	4	451.2905578613281	2	451.289485	900.564418	0.24558	0.00011083	-0.62488	-0.000282	-0.3793	-0.00017117	451.28909551125827	74.128	2.1614	70.897	70.579	72.741	-3.2308					113	44	5	0	0	0	0.045281	2	5793	5781;5793		122.18	31.806	1	1762500			21204	8617	17305	17328	23574;23575	23575					0.11015832453983876
IVAHLHRA	8	Unmodified	_IVAHLHRA_					0	0	0			REV__nc|ENSG00000189013|Q99706-2|KIR2DL4	REV__nc|ENSG00000189013|Q99706-2|KIR2DL4	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.7776184082031	2	458.777411	915.540269	-1.0902	-0.00050015	-0.66474	-0.00030497	-1.7549	-0.00080511	458.7769697809787	54.536	0.923	51.289	51.03	51.953	-3.2474					44	17	3	0	0	0	0.64377	1	3388	3388		54.765	0	1	310920	+		21205	29067	17306	17329	23576	23576					0.07912036810978407
IVAIKRHN	8	Unmodified	_IVAIKRHN_					0	0	0			REV__tr|A0A7D6VT62|A0A7D6VT62_9CLOTcardiolipinsynthaseOS=ClostridiumintestinaleOX=36845GN=clsPE=4SV=1	REV__tr|A0A7D6VT62|A0A7D6VT62_9CLOTcardiolipinsynthaseOS=ClostridiumintestinaleOX=36845GN=clsPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.7994384765625	2	475.798343	949.582134	0.51445	0.00024477	-0.54243	-0.00025809	-0.027981	-1.3313E-05	475.79793233610815	57.333	1.6692	53.988	53.577	55.247	-3.3449					58	32	3	0	0	0	0.74971	1	3725	3725		26.796	1.3459	1	247950	+		21206	31575	17307	17330	23577	23577					0.10532592499509974
IVAIKRHN	8	Unmodified	_IVAIKRHN_					0	0	0			REV__tr|A0A7D6VT62|A0A7D6VT62_9CLOTcardiolipinsynthaseOS=ClostridiumintestinaleOX=36845GN=clsPE=4SV=1	REV__tr|A0A7D6VT62|A0A7D6VT62_9CLOTcardiolipinsynthaseOS=ClostridiumintestinaleOX=36845GN=clsPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	475.798343	949.582134	-0.93714	-0.00044589	0.96701	0.0004601	0.029871	1.4212E-05	475.7986556959677	56.552	1.6358	53.748	53.225	54.861	-2.804	-0.12033	0.00063797	NaN	26.796	74	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148710	+		21207	31575	17307	17330							0.10532592499509974
IVAIKRHN	8	Unmodified	_IVAIKRHN_					0	0	0			REV__tr|A0A7D6VT62|A0A7D6VT62_9CLOTcardiolipinsynthaseOS=ClostridiumintestinaleOX=36845GN=clsPE=4SV=1	REV__tr|A0A7D6VT62|A0A7D6VT62_9CLOTcardiolipinsynthaseOS=ClostridiumintestinaleOX=36845GN=clsPE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	475.798343	949.582134	0.51445	0.00024477	-0.54243	-0.00025809	-0.027981	-1.3313E-05	475.79793233610815	57.333	1.6692	53.988	53.577	55.247	-3.3449	0.12033	-0.0007984	NaN	26.796	58	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247950	+		21208	31575	17307	17330							0.10532592499509974
IVAITQVTSVF	11	Unmodified	_IVAITQVTSVF_					0	0	0		ENSG00000196184|ENST00000423932|OR10J1;nc|ENSG00000196184|P30954|OR10J1	ENSG00000196184|ENST00000423932|OR10J1	ENSG00000196184|ENST00000423932|OR10J1	MULTI-MSMS	OvCa9_classI_Rep2	2	589.342041015625	2	589.344989	1176.67542	-3.0463	-0.0017953	-0.38122	-0.00022467	-3.4276	-0.00202	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.72473	1	14949	14949		19.104	0	1	272220			21209	8574	17308	17331	23578	23578					0.09415427371413898
IVAIVVPIE	9	Unmodified	_IVAIVVPIE_					0	0	0			REV__tr|A0A7D6ZS61|A0A7D6ZS61_9CLOTPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14575PE=4SV=1	REV__tr|A0A7D6ZS61|A0A7D6ZS61_9CLOTPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14575PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	476.8064880371094	2	476.807511	951.600469	0.28578	0.00013626	-3.2828	-0.0015653	-2.997	-0.001429	476.80579878083404	40.986	1.3783	38.276	37.848	39.226	-2.7097					68	27	3	0	0	0	0.55698	1	2110	2110		37.028	1.8278	1	368580	+		21210	32177	17309	17332	23579	23579					0.12273289630854833
IVAKGREEN	9	Unmodified	_IVAKGREEN_					0	0	0			REV__tr|A0A553SJQ6|A0A553SJQ6_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_17110PE=3SV=1	REV__tr|A0A553SJQ6|A0A553SJQ6_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_17110PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	508.28021240234375	2	508.28018	1014.54581	-1.6711	-0.00084936	0.97182	0.00049395	-0.69924	-0.00035541	508.28074905402514	34.159	1.2366	31.449	31.119	32.356	-2.7097					49	24	3	0	0	0	0.40667	1	1291	1291		51.335	12.529	1	122020	+		21211	30030	17310	17333	23580	23580					0.03911670812135526
IVALILSTK	9	Unmodified	_IVALILSTK_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-MSMS	OvCa9_classI_Rep2	2	479.32086181640625	2	479.320786	956.627018	-1.2027	-0.00057646	0.22506	0.00010788	-0.9776	-0.00046859	479.32072829654146	100.41	3.9084	99.583	99.162	103.07	-0.83051					175	78	4	0	0	0	0.1149	4	9222	9222;9227;9234;9247		93.143	15.125	1	501220			21212	8296	17311	17334	23581;23582;23583;23584	23581					0.14696978522181325
IVALILSTK	9	Unmodified	_IVALILSTK_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-MSMS	OvCa9_classI_Rep3	3	479.3206787109375	2	479.320786	956.627018	-0.50438	-0.00024176	0.068329	3.2751E-05	-0.43605	-0.00020901	479.3206290945118	101.18	3.8625	99.577	99.194	103.06	-1.6053					169	73	5	0	0	0	0.075543	8	6932	6892;6898;6905;6911;6917;6925;6932;6947		104.06	29.802	1	668900			21213	8296	17311	17334	23585;23586;23587;23588;23589;23590;23591;23592	23591					0.14696978522181325
IVALILSTK	9	Unmodified	_IVALILSTK_					0	0	0		ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.32110595703125	2	479.320786	956.627018	-0.16696	-8.0029E-05	-0.66515	-0.00031882	-0.83211	-0.00039885	479.3202650280874	101.83	3.5929	99.56	99.208	102.8	-2.2665					158	68	4	0	0	0	0.070405	3	9165	9153;9165;9214		107.01	29.802	1	554490			21214	8296	17311	17334	23593;23594;23595	23594					0.14696978522181325
IVALLKSLT	9	Unmodified	_IVALLKSLT_					0	0	0			REV__ENSG00000115084|ENST00000245680|SLC35F5	REV__ENSG00000115084|ENST00000245680|SLC35F5	MULTI-MSMS	OvCa9_classI_Rep2	2	479.3201599121094	2	479.320786	956.627018	-1.2027	-0.00057646	0.22506	0.00010788	-0.9776	-0.00046859	479.32072829654146	100.41	3.9084	99.583	99.162	103.07	-0.83051					175	78	4	0	0	0	0.24951	1	9241	9241		68.787	2.3575	1	501220	+		21215	18216	17312	17335	23596	23596					0.14696978522169957
IVALLKSLV	9	Unmodified	_IVALLKSLV_					0	0	0			REV__ENSG00000197275|ENST00000336148|RAD54B	REV__ENSG00000197275|ENST00000336148|RAD54B	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.3201599121094	2	478.331153	954.647754	-1.0481	-0.00050133	-0.025026	-1.1971E-05	-1.0731	-0.0005133	478.3309330321966	99.9	1.5866	99.07	98.816	100.4	-0.83051					65	31	3	0	0	0	0.027462	1	9241	9241		44.531	7.5026	1	122630	+		21216	22907	17313	17336	23597	23597					0.16861568901845203
IVAMPKNLN	9	Oxidation (M)	_IVAM(Oxidation (M))PKNLN_		IVAM(1)PKNLN		IVAM(71)PKNLN	0	0	1		nc|ENSG00000189195|Q5XKL5-4|BTBD8;nc|ENSG00000189195|Q5XKL5|BTBD8	nc|ENSG00000189195|Q5XKL5-4|BTBD8	nc|ENSG00000189195|Q5XKL5-4|BTBD8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.30303955078125	2	508.283877	1014.5532	-0.79025	-0.00040167	-3.837	-0.0019503	-4.6273	-0.002352	508.28206210478163	82.588	0.19653	79.905	79.782	79.979	-2.6829					5	3	2	0	0	0	0.027279	1	6830	6830		71.296	13.484	1	28231			21217	15235	17314	17337	23598	23598		370			0.04650687088224004
IVAMRVPTL	9	Oxidation (M)	_IVAM(Oxidation (M))RVPTL_		IVAM(1)RVPTL		IVAM(85)RVPTL	0	0	1			REV__L1PA2_dup23|chr1:43114528-43120516:-|1.3533449411662286|0.3152228216366226|2.1|404.0|22|1|sense	REV__L1PA2_dup23|chr1:43114528-43120516:-|1.3533449411662286|0.3152228216366226|2.1|404.0|22|1|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	508.30474853515625	2	508.30207	1014.58959	-1.2179	-0.00061906	0.49292	0.00025055	-0.72497	-0.0003685	508.30222432035663	82.41	2.3047	80.114	79.182	81.487	-2.2963					153	46	5	0	0	0	0.14998	1	4669	4669		84.916	8.0689	1	1883000	+		21218	28478	17315	17338	23599	23599		625			0.08287563984924873
IVAPEETLTL	10	Unmodified	_IVAPEETLTL_					0	0	0		nc|ENSG00000104972|Q8NHL6-5|LILRB1;nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000104972|Q8NHL6-4|LILRB1;nc|ENSG00000104972|Q8NHL6-2|LILRB1;nc|ENSG00000104972|Q8NHL6-3|LILRB1;ENSG00000104972|ENST00000324602|LILRB1	nc|ENSG00000104972|Q8NHL6-5|LILRB1	nc|ENSG00000104972|Q8NHL6-5|LILRB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.3077392578125	2	543.308072	1084.60159	-0.44282	-0.00024059	-2.7401	-0.0014887	-3.1829	-0.0017293	543.3065383271143	56.559	2.3365	53.264	52.361	54.698	-3.2944					99	45	4	0	0	0	0.48198	1	3629	3629		56.721	3.3696	1	574190			21219	2412	17316	17339	23600	23600					0.06267459209107074
IVAPEETLTL	10	Unmodified	_IVAPEETLTL_					0	0	0		nc|ENSG00000104972|Q8NHL6-5|LILRB1;nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000104972|Q8NHL6-4|LILRB1;nc|ENSG00000104972|Q8NHL6-2|LILRB1;nc|ENSG00000104972|Q8NHL6-3|LILRB1;ENSG00000104972|ENST00000324602|LILRB1	nc|ENSG00000104972|Q8NHL6-5|LILRB1	nc|ENSG00000104972|Q8NHL6-5|LILRB1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	543.308072	1084.60159	-1.3239	-0.00071931	-1.6499	-0.00089641	-2.9739	-0.0016157	543.3071028351694	56.078	1.8333	53.274	52.681	54.515	-2.804	0.0050347	0.00064616	NaN	56.721	70	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157670			21220	2412	17316	17339							0.06267459209107074
IVAPQVKHRF	10	Unmodified	_IVAPQVKHRF_					0	0	0		tr|A0A7D6ZYJ4|A0A7D6ZYJ4_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_02555PE=4SV=1	tr|A0A7D6ZYJ4|A0A7D6ZYJ4_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_02555PE=4SV=1	tr|A0A7D6ZYJ4|A0A7D6ZYJ4_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_02555PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8527221679688	2	597.858932	1193.70331	-3.2384	-0.0019361	-0.87507	-0.00052317	-4.1135	-0.0024593	597.8582084456802	152.89	1.1226	151.46	151.04	152.16	-1.4351					61	26	3	0	0	0	0.81289	1	15103	15103		17.365	0.89182	1	50972			21221	35919	17317	17340	23601	23601					0.11420795142180395
IVAVDCPQ	8	Carbamidomethyl (C)	_IVAVDC(Carbamidomethyl (C))PQ_	IVAVDC(1)PQ		IVAVDC(77)PQ		0	1	0			REV__nc|ENSG00000178821|Q8NDY8-2|TMEM52	REV__nc|ENSG00000178821|Q8NDY8-2|TMEM52	MULTI-SECPEP	OvCa9_classI_Rep2	2	451.28936767578125	2	451.226028	900.437503	2.305	0.0010401	-1.9705	-0.00088915	0.33443	0.0001509	451.2248301284095	72.771	0.78171	70.371	70.063	70.844	-2.3999					24	14	3	0	0	0	0.028476	1	5946	5946		76.847	43.331	1	16989	+		21222	22083	17318	17341	23602	23602	254				-0.016698367626418076
IVAVPGNDI	9	Unmodified	_IVAVPGNDI_					0	0	0		tr|A0A553SS49|A0A553SS49_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02415PE=4SV=1	tr|A0A553SS49|A0A553SS49_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02415PE=4SV=1	tr|A0A553SS49|A0A553SS49_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02415PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	449.2690124511719	2	449.255643	896.496732	3.2016	0.0014384	-0.6776	-0.00030442	2.524	0.0011339	449.2553216103467	112.37	0.29605	112.25	112.13	112.43	-0.12174					7	5	2	0	0	0	0.027462	1	10626	10626		37.159	3.6435	1	6840.3			21223	34333	17319	17342	23603	23603					0.04434382523197655
IVAVTGKIT	9	Unmodified	_IVAVTGKIT_					0	0	0		tr|A0A553SFA4|A0A553SFA4_NIACI5-deoxy-glucuronateisomeraseOS=NialliacirculansOX=1397GN=iolBPE=3SV=1	tr|A0A553SFA4|A0A553SFA4_NIACI5-deoxy-glucuronateisomeraseOS=NialliacirculansOX=1397GN=iolBPE=3SV=1	tr|A0A553SFA4|A0A553SFA4_NIACI5-deoxy-glucuronateisomeraseOS=NialliacirculansOX=1397GN=iolBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	451.2897033691406	2	451.289485	900.564418	2.1691	0.00097888	-2.3497	-0.0010604	-0.18064	-8.152E-05	451.2882720515127	73.11	2.1463	70.71	69.959	72.105	-2.3999					108	40	4	0	0	0	0.24951	2	5941	5941;5959		68.787	11.971	1	510520			21224	33013	17320	17343	23604;23605	23604					0.11015832453995245
IVAVTGKIT	9	Unmodified	_IVAVTGKIT_					0	0	0		tr|A0A553SFA4|A0A553SFA4_NIACI5-deoxy-glucuronateisomeraseOS=NialliacirculansOX=1397GN=iolBPE=3SV=1	tr|A0A553SFA4|A0A553SFA4_NIACI5-deoxy-glucuronateisomeraseOS=NialliacirculansOX=1397GN=iolBPE=3SV=1	tr|A0A553SFA4|A0A553SFA4_NIACI5-deoxy-glucuronateisomeraseOS=NialliacirculansOX=1397GN=iolBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	451.2904357910156	2	451.289485	900.564418	0.24558	0.00011083	-0.62488	-0.000282	-0.3793	-0.00017117	451.28909551125827	74.128	2.1614	70.897	70.579	72.741	-3.2308					113	44	5	0	0	0	0.42676	1	5819	5819		49.442	3.4896	1	1762500			21225	33013	17320	17343	23606	23606					0.11015832453995245
IVAVVAPFLN	10	Unmodified	_IVAVVAPFLN_					0	0	0		tr|A0A553SMA8|A0A553SMA8_NIACIABC-2typetransportsystempermeaseproteinOS=NialliacirculansOX=1397GN=CEQ21_22150PE=4SV=1	tr|A0A553SMA8|A0A553SMA8_NIACIABC-2typetransportsystempermeaseproteinOS=NialliacirculansOX=1397GN=CEQ21_22150PE=4SV=1	tr|A0A553SMA8|A0A553SMA8_NIACIABC-2typetransportsystempermeaseproteinOS=NialliacirculansOX=1397GN=CEQ21_22150PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.2918701171875	2	521.81841	1041.62227	-2.7176	-0.0014181	4.2185	0.0022013	1.5009	0.00078321	521.8204304061558	126.41	0.19133	124.99	124.88	125.07	-1.4143					5	3	2	0	0	0	0.026639	1	12019	12019		63.306	39.104	1	4269.1			21226	33817	17321	17344	23607	23607					0.10312094379423797
IVCERQSSKS	10	Unmodified	_IVCERQSSKS_					0	0	0			REV__ENST00000366221.3_2_1:1510630-1510894:+|nuORF	REV__ENST00000366221.3_2_1:1510630-1510894:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.8076782226562	2	568.790055	1135.56556	-0.31038	-0.00017654	3.6947	0.0021015	3.3843	0.0019249	568.7920654967389	69.546	0.87637	66.065	65.713	66.589	-3.4812					23	17	2	0	0	0	0.027145	1	5276	5276		12.812	0	1	40353	+		21227	24876	17322	17345	23608	23608					0.003196787605929785
IVCFVLLVF	9	Unmodified	_IVCFVLLVF_					0	0	0		tr|A0A553SP86|A0A553SP86_NIACIStageVsporulationproteinEOS=NialliacirculansOX=1397GN=spoVEPE=4SV=1	tr|A0A553SP86|A0A553SP86_NIACIStageVsporulationproteinEOS=NialliacirculansOX=1397GN=spoVEPE=4SV=1	tr|A0A553SP86|A0A553SP86_NIACIStageVsporulationproteinEOS=NialliacirculansOX=1397GN=spoVEPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.2688598632812	2	526.814282	1051.61401	0.60074	0.00031648	1.6275	0.00085737	2.2282	0.0011739	527.3186724894424	105.7	0.17487	105.7	105.57	105.75	0					5	3	2	0	0	0	0.027462	1	11863	11863		29.842	8.1392	1	34883			21228	34017	17323	17346	23609	23609					0.09026824138459233
IVCGTGAPPAI	11	Unmodified	_IVCGTGAPPAI_					0	0	0			REV__SPON1-PSMB1|1|fusion	REV__SPON1-PSMB1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	499.76788330078125	2	499.770603	997.526652	-1.208	-0.00060371	-2.7877	-0.0013932	-3.9956	-0.0019969	499.7689113094421	103.18	0.93729	102.5	102.18	103.12	-0.68459					43	18	3	0	0	0	0.46066	1	9522	9522		56.721	5.3856	1	278080	+		21229	23575	17324	17347	23610	23610					0.027789981968680877
IVCLMITQ	8	Unmodified	_IVCLMITQ_					0	0	0		nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5;nc|ENSG00000114770|O15440-4|ABCC5;nc|ENSG00000114770|O15440-3|ABCC5;nc|ENSG00000114770|O15440-2|ABCC5	nc|ENSG00000114770|O15440-5|ABCC5	nc|ENSG00000114770|O15440-5|ABCC5	MULTI-SECPEP	OvCa99_classI_Rep5	1	460.25933837890625	2	460.750824	919.487096	-0.045233	-2.0841E-05	0.85266	0.00039287	0.80743	0.00037202	460.7509662981482	56.775	0.50655	56.775	56.498	57.004	0					18	11	2	0	0	0	0.028476	1	4692	4692		6.3127	0	1	703150			21230	3040	17325	17348	23611	23611					0.02413154921782734
IVCLVCIRSI	10	Unmodified	_IVCLVCIRSI_					0	0	0			REV__TAS2R7|p.L58V|1|0.05|ENSG00000121377|chr12:10802399-10802399|G/C|missense_variant	REV__TAS2R7|p.L58V|1|0.05|ENSG00000121377|chr12:10802399-10802399|G/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.7978515625	2	559.824855	1117.63516	2.672	0.0014959	2.233	0.0012501	4.905	0.0027459	559.8260083294048	116.42	1.0855	116.42	116.09	117.18	0					46	23	3	0	0	0	0.026939	1	13288	13288		31.955	0	1	771140	+		21231	29486	17326	17349	23612	23612					0.08104466175655034
IVCPVGNEL	9	Carbamidomethyl (C)	_IVC(Carbamidomethyl (C))PVGNEL_	IVC(1)PVGNEL		IVC(100)PVGNEL		0	1	0			REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.3017883300781	2	500.760235	999.505917	-0.89298	-0.00044717	-2.4135	-0.0012086	-3.3065	-0.0016558	500.7588904848693	103.82	1.4148	101.7	101.33	102.74	-2.1192					52	26	3	0	0	0	0.027164	1	9471	9471		102.77	25.927	1	64928	+		21232	18532	17327	17350	23613	23613	203				0.006144078172155787
IVCRRPYL	8	Unmodified	_IVCRRPYL_					0	0	0		ENST00000490639.5_1_3:148895590-148939579:-|nuORF;ENSG00000047457|ENST00000264613|CP;ENST00000460674.5_1_3:148894093-148897462:-|nuORF	ENST00000490639.5_1_3:148895590-148939579:-|nuORF	ENST00000490639.5_1_3:148895590-148939579:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	510.25634765625	2	510.294579	1018.57461	-1.2076	-0.00061621	-4.4084	-0.0022496	-5.616	-0.0028658	510.2914378366074	93.768	1.1084	91.806	91.03	92.138	-1.9617					33	21	2	0	0	0	0.028476	1	6008	6008		37.028	1.4102	1	64474			21233	1145	17328	17351	23614	23614					0.0660611690756241
IVCRRPYL	8	Unmodified	_IVCRRPYL_					0	0	0		ENST00000490639.5_1_3:148895590-148939579:-|nuORF;ENSG00000047457|ENST00000264613|CP;ENST00000460674.5_1_3:148894093-148897462:-|nuORF	ENST00000490639.5_1_3:148895590-148939579:-|nuORF	ENST00000490639.5_1_3:148895590-148939579:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	510.294579	1018.57461	0.14182	7.237E-05	-6.5336	-0.0033341	-6.3918	-0.0032617	510.2912993173169	93.012	1.238	91.844	90.919	92.157	-1.168	0.031609	-0.0014911	NaN	54.765	41	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43079			21234	1145	17328	17351							0.0660611690756241
IVCTWEAEV	9	Unmodified	_IVCTWEAEV_					0	0	0		AluSx1_dup75655|chr12:66057683-66057959:-|1.7209856805655352|0.0284294000555966|5.92|429.0|4|1|sense	AluSx1_dup75655|chr12:66057683-66057959:-|1.7209856805655352|0.0284294000555966|5.92|429.0|4|1|sense	AluSx1_dup75655|chr12:66057683-66057959:-|1.7209856805655352|0.0284294000555966|5.92|429.0|4|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.762939453125	2	525.252243	1048.48993	-1.3101	-0.00068812	-4.3451	-0.0022823	-5.6551	-0.0029704	525.2502025836367	70.154	0.63956	66.673	66.442	67.081	-3.4812					29	12	3	0	0	0	0.027462	1	5260	5260		17.365	0	1	53600			21235	78	17329	17352	23615	23615					-0.03237298419708168
IVDHHGTAQL	10	Unmodified	_IVDHHGTAQL_					0	0	0		nc|ENSG00000143624|Q68E01-3|INTS3;ENSG00000143624|ENST00000318967|INTS3;nc|ENSG00000143624|Q68E01|INTS3;ENST00000481797.5_1_1:153721154-153726193:+|nuORF	nc|ENSG00000143624|Q68E01-3|INTS3	nc|ENSG00000143624|Q68E01-3|INTS3	MULTI-MSMS	OvCa9_classI_Rep3	3	545.7839965820312	2	545.78563	1089.55671	1.2649	0.00069035	-2.1921	-0.0011964	-0.92725	-0.00050608	545.7840712809303	112.68	1.3472	111.6	111.32	112.66	-1.0753					69	26	5	0	0	0	0.22663	1	8243	8243		90.37	7.6193	1	305850			21236	5079	17330	17353	23616	23616					0.015510731864196714
IVDHNLDAVL	10	Unmodified	_IVDHNLDAVL_					0	0	0		tr|A0A553SQB9|A0A553SQB9_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26305PE=4SV=1	tr|A0A553SQB9|A0A553SQB9_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26305PE=4SV=1	tr|A0A553SQB9|A0A553SQB9_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26305PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	554.8087768554688	2	554.803488	1107.59242	2.2005	0.0012208	3.2355	0.0017951	5.436	0.0030159	554.8051208752979	118.08	0.78812	118.08	117.6	118.39	0					31	16	4	0	0	0	0.42962	1	13534	13534		64.207	0.901	1	245540			21237	34144	17331	17354	23617	23617					0.0429311064342528
IVDKTASFV	9	Unmodified	_IVDKTASFV_					0	0	0		nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1;ENST00000496189.1_1_22:30748938-30752805:-|nuORF;ENST00000463818.1_1_22:30742246-30752805:-|nuORF	nc|ENSG00000099995|Q15459-2|SF3A1	nc|ENSG00000099995|Q15459-2|SF3A1	MULTI-MSMS	OvCa99_classI_Rep5	1	490.2779235839844	2	490.276575	978.538597	0.15245	7.4743E-05	-0.54564	-0.00026752	-0.39319	-0.00019277	490.2761362792255	71.935	0.58067	71.935	71.668	72.249	0					31	13	3	0	0	0	0.16264	1	6973	6973		82.75	16.947	1	3144900			21238	1991	17332	17355	23618	23618					0.04846938211721863
IVDKTASFV	9	Unmodified	_IVDKTASFV_					0	0	0		nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1;ENST00000496189.1_1_22:30748938-30752805:-|nuORF;ENST00000463818.1_1_22:30742246-30752805:-|nuORF	nc|ENSG00000099995|Q15459-2|SF3A1	nc|ENSG00000099995|Q15459-2|SF3A1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	490.276575	978.538597	0.35729	0.00017517	-1.4794	-0.00072534	-1.1222	-0.00055017	490.2758452074452	75.35	0.87322	72.12	71.915	72.788	-3.2308	0.092411	-0.00054049	NaN	82.75	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79722			21239	1991	17332	17355							0.04846938211721863
IVDKTCKLQ	9	Unmodified	_IVDKTCKLQ_					0	0	0		ENST00000500358.6_1_4:100010048-100010204:+|nuORF	ENST00000500358.6_1_4:100010048-100010204:+|nuORF	ENST00000500358.6_1_4:100010048-100010204:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.290283203125	2	524.296985	1046.57942	-1.345	-0.00070517	-1.4089	-0.00073868	-2.7539	-0.0014438	524.2963346453154	117.9	1.5252	116.55	116.21	117.73	-1.3444					53	28	4	0	0	0	0.14998	1	11061	11061		84.916	0	1	1011100			21240	12839	17333	17356	23619	23619					0.05798956259695842
IVDKVPSV	8	Unmodified	_IVDKVPSV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	OvCa99_classI_Rep5	1	428.7615051269531	2	428.760561	855.506569	1.4211	0.00060931	0.67994	0.00029153	2.101	0.00090084	428.7608244125776	81.607	0.6909	81.607	81.288	81.979	0					40	16	3	0	0	0	0.42405	1	8420	8420		85.161	11.186	1	1207600			21241	7955	17334	17357	23620	23620					0.0730357052857471
IVDLLFWT	8	Unmodified	_IVDLLFWT_					0	0	0			REV__ENSG00000135519|ENST00000257981|KCNH3	REV__ENSG00000135519|ENST00000257981|KCNH3	MULTI-MSMS	OvCa99_classI_Rep5	1	503.7831115722656	2	503.784036	1005.55352	1.2078	0.00060846	-2.7306	-0.0013756	-1.5228	-0.00076715	503.78252342914	144.41	0.68181	144.41	144.11	144.79	0					30	13	3	0	0	0	0.64026	1	16887	16887		55.504	9.5523	1	115230	+		21242	19295	17335	17358	23621	23621					0.0509643007970908
IVDLVVLGVCL	11	Unmodified	_IVDLVVLGVCL_					0	0	0			REV__nc|ENSG00000138030|P50053-2|KHK	REV__nc|ENSG00000138030|P50053-2|KHK	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.8477172851562	2	571.84631	1141.67807	-0.94788	-0.00054204	2.6992	0.0015435	1.7513	0.0010015	571.8479143445335	37.248	1.0113	37.248	36.885	37.896	0					13	7	3	0	0	0	0.02557	1	2094	2094		31.53	11.533	1	53132	+		21243	28880	17336	17359	23622	23622					0.11289559504734825
IVDMHAAADI	10	Unmodified	_IVDMHAAADI_					0	0	0		nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1	nc|ENSG00000118007|Q8WVM7-2|STAG1	nc|ENSG00000118007|Q8WVM7-2|STAG1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.291748046875	2	528.263142	1054.51173	2.2934	0.0012115	0.58322	0.00030809	2.8766	0.0015196	528.2634671641727	86.809	0.29349	86.809	86.637	86.931	0					11	6	2	0	0	0	0.026802	1	9168	9168		51.335	1.8939	1	296870			21244	3285	17337	17360	23623	23623					-0.013344936711291666
IVDMHAAADI	10	Unmodified	_IVDMHAAADI_					0	0	0		nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1	nc|ENSG00000118007|Q8WVM7-2|STAG1	nc|ENSG00000118007|Q8WVM7-2|STAG1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	528.263142	1054.51173	1.2813	0.00067685	-1.5966	-0.00084341	-0.31531	-0.00016657	528.2622316893357	88.575	0.78665	87.207	86.839	87.625	-1.3676	0.17802	-0.0010516	NaN	51.335	29	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62071			21245	3285	17337	17360							-0.013344936711291666
IVDMHAAADI	10	Unmodified	_IVDMHAAADI_					0	0	0		nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1	nc|ENSG00000118007|Q8WVM7-2|STAG1	nc|ENSG00000118007|Q8WVM7-2|STAG1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	528.263142	1054.51173	-0.77175	-0.00040769	0.82007	0.00043321	0.048319	2.5525E-05	528.2634101236598	89.115	0.93538	86.984	86.607	87.542	-2.1309	-0.045259	0.0015017	NaN	51.335	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101110			21246	3285	17337	17360							-0.013344936711291666
IVDPIRRH	8	Unmodified	_IVDPIRRH_					0	0	0		nc|ENSG00000137691|Q9BRQ4-2|CFAP300;ENST00000530659.1_1_11:101918495-101953927:+|nuORF;ENSG00000137691|ENST00000434758|CFAP300	nc|ENSG00000137691|Q9BRQ4-2|CFAP300	nc|ENSG00000137691|Q9BRQ4-2|CFAP300	MULTI-SECPEP	OvCa9_classI_Rep2	2	503.3260803222656	2	503.30125	1004.58795	0.17019	8.5656E-05	-4.4598	-0.0022446	-4.2896	-0.002159	503.7991259181858	113.03	0.39448	112.91	112.72	113.12	-0.12174					12	7	2	0	0	0	0.028476	1	10720	10720		40.573	0	1	18843			21247	4607	17338	17361	23624	23624					0.08583691011187966
IVECGPVLL	9	Unmodified	_IVECGPVLL_					0	0	0		ENST00000549928.5_1_12:60154925-60173457:+|nuORF;ENSG00000118596|ENST00000547379|SLC16A7	ENST00000549928.5_1_12:60154925-60173457:+|nuORF	ENST00000549928.5_1_12:60154925-60173457:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.7721252441406	2	471.770071	941.52559	0.70033	0.0003304	3.1416	0.0014821	3.842	0.0018125	471.77151465294384	65.014	2.1826	61.528	60.872	63.054	-3.4854					101	44	4	0	0	0	0.17908	1	4647	4647		79.939	11.455	1	2027800			21248	3317	17339	17362	23625	23625					0.05248783827960324
IVECPQCH	8	Unmodified	_IVECPQCH_					0	0	0		tr|A0A7D6VXY2|A0A7D6VXY2_9CLOTLargeribosomalsubunitproteinbL32OS=ClostridiumintestinaleOX=36845GN=rpmFPE=3SV=1	tr|A0A7D6VXY2|A0A7D6VXY2_9CLOTLargeribosomalsubunitproteinbL32OS=ClostridiumintestinaleOX=36845GN=rpmFPE=3SV=1	tr|A0A7D6VXY2|A0A7D6VXY2_9CLOTLargeribosomalsubunitproteinbL32OS=ClostridiumintestinaleOX=36845GN=rpmFPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.72760009765625	2	464.704405	927.394258	0.014207	6.6021E-06	-0.76384	-0.00035496	-0.74964	-0.00034836	464.7038075302036	30.81	0.64504	30.81	30.285	30.93	0					20	12	3	0	0	0	0.028476	1	1160	1160		16.473	0	1	50692			21249	35307	17340	17363	23626	23626					-0.07234349811574248
IVEEEMFLV	9	Unmodified	_IVEEEMFLV_					0	0	0		ENST00000355774.6_2_14:75514533-75514686:-|nuORF	ENST00000355774.6_2_14:75514533-75514686:-|nuORF	ENST00000355774.6_2_14:75514533-75514686:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.8104248046875	2	554.783376	1107.5522	1.7159	0.00095198	4.285	0.0023773	6.001	0.0033292	554.7854398759272	92.416	0.62843	92.416	92.092	92.721	0					28	14	3	0	0	0	0.027462	1	9989	9989		38.806	3.6054	1	1204800			21250	10685	17341	17364	23627	23627					0.0027242792864399235
IVEFIINL	8	Unmodified	_IVEFIINL_					0	0	0		ENST00000556393.1_1_14:50768817-50768874:-|nuORF	ENST00000556393.1_1_14:50768817-50768874:-|nuORF	ENST00000556393.1_1_14:50768817-50768874:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.71905517578125	2	480.791861	959.569169	-0.10501	-5.0489E-05	-1.2632	-0.00060732	-1.3682	-0.00065781	480.7917764309062	60.416	0.52229	60.416	60.079	60.602	0					21	12	3	0	0	0	0.028476	1	5269	5269		38.806	0	1	288090			21251	13658	17342	17365	23628	23628					0.08776716596742062
IVEGCLLCVFA	11	Unmodified	_IVEGCLLCVFA_					0	0	0			REV__tr|A0A553SID2|A0A553SID2_NIACIDUF2087domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14595PE=4SV=1	REV__tr|A0A553SID2|A0A553SID2_NIACIDUF2087domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14595PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8031005859375	2	583.801045	1165.58754	0.97841	0.0005712	2.3411	0.0013667	3.3195	0.0019379	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.72493	1	1336	1336		16.473	2.336	1	155970	+		21252	29883	17343	17366	23629	23629					0.011367671848120153
IVEIIKPPL	9	Unmodified	_IVEIIKPPL_					0	0	0			REV__ENSG00000157578|ENST00000288350|LCA5L	REV__ENSG00000157578|ENST00000288350|LCA5L	MULTI-MSMS	OvCa9_classI_Rep2	2	511.3357849121094	2	511.336436	1020.65832	0.67261	0.00034393	-0.86721	-0.00044344	-0.19461	-9.9509E-05	511.33582601620805	126.08	1.3814	125.85	125.5	126.89	-0.23589					66	27	4	0	0	0	0.44294	2	12289	12289;12307		47.916	7.343	1	172330	+		21253	20523	17344	17367	23630;23631	23630					0.14881551556277373
IVEIIKPPL	9	Unmodified	_IVEIIKPPL_					0	0	0			REV__ENSG00000157578|ENST00000288350|LCA5L	REV__ENSG00000157578|ENST00000288350|LCA5L	MULTI-MSMS	OvCa9_classI_Rep3	3	511.33551025390625	2	511.336436	1020.65832	1.2132	0.00062035	-1.4172	-0.00072469	-0.20405	-0.00010434	511.33557175390297	127.02	1.4474	125.94	125.6	127.05	-1.0715					62	27	4	0	0	0	0.48324	1	9937	9937		44.117	1.7207	1	200840	+		21254	20523	17344	17367	23632	23632					0.14881551556277373
IVEMPVQEN	9	Unmodified	_IVEMPVQEN_					0	0	0			REV__ENSG00000009765|ENST00000344419|IYD	REV__ENSG00000009765|ENST00000344419|IYD	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7899169921875	2	529.762975	1057.5114	1.5906	0.00084263	1.0096	0.00053487	2.6002	0.0013775	529.7634644291971	135.41	0.74838	135.41	135.13	135.88	0					25	15	2	0	0	0	0.027462	1	15810	15810		30.504	0	1	75350	+		21255	16468	17345	17368	23633	23633					-0.01505913390974456
IVENFGKQL	9	Unmodified	_IVENFGKQL_					0	0	0			REV__ENST00000582081.5_1_17:62541968-62590137:-|nuORF	REV__ENST00000582081.5_1_17:62541968-62590137:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	524.2922973632812	2	524.295299	1046.57605	-0.92225	-0.00048353	1.1699	0.00061337	0.24765	0.00012984	524.2957443271708	116.92	1.684	116.79	116.47	118.15	-0.12869					60	33	4	0	0	0	0.27001	1	11200	11200		66.429	0.96389	1	635800	+		21256	17909	17346	17369	23634	23634					0.05462029477325814
IVESKSKLT	9	Unmodified	_IVESKSKLT_					0	0	0			REV__ESCO2|p.Q234L|1|0.1|ENSG00000171320|chr8:27777009-27777009|A/T|missense_variant	REV__ESCO2|p.Q234L|1|0.1|ENSG00000171320|chr8:27777009-27777009|A/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	503.2758483886719	2	502.802957	1003.59136	-0.34022	-0.00017107	-0.47286	-0.00023776	-0.81308	-0.00040882	502.8037880014954	82.91	0.25416	81.311	81.115	81.369	-1.5988					7	4	2	0	0	0	0.027462	1	7086	7086		21.96	13.138	1	11726	+		21257	28118	17347	17370	23635	23635					0.08970896274524875
IVETQELK	8	Unmodified	_IVETQELK_					0	0	0		nc|ENSG00000186714|Q6ZRK6-2|CCDC73;ENSG00000186714|ENST00000335185|CCDC73	nc|ENSG00000186714|Q6ZRK6-2|CCDC73	nc|ENSG00000186714|Q6ZRK6-2|CCDC73	MULTI-MSMS	OvCa99_classI_Rep5	1	480.2709655761719	2	480.274032	958.533512	-0.95037	-0.00045644	0.12315	5.9147E-05	-0.82722	-0.00039729	480.27405291885293	44.158	0.39772	44.158	43.952	44.35	0					13	8	2	0	0	0	0.45246	1	2969	2969		82.305	0	1	242700			21258	8358	17348	17371	23636	23636					0.05258634349104341
IVEVCIEF	8	Carbamidomethyl (C)	_IVEVC(Carbamidomethyl (C))IEF_	IVEVC(1)IEF		IVEVC(75)IEF		0	1	0			REV__nc|ENSG00000132437|P20711-4|DDC	REV__nc|ENSG00000132437|P20711-4|DDC	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.7581481933594	2	504.757161	1007.49977	-1.3809	-0.000697	-2.4081	-0.0012155	-3.789	-0.0019125	504.75584059503456	54.92	1.0744	51.672	51.183	52.257	-3.2474					38	20	3	0	0	0	0.52992	1	3428	3428		74.517	11.21	1	401150	+		21259	19078	17349	17372	23637	23637	210				-0.0036811041430837577
IVEWGLEIKKR	11	Unmodified	_IVEWGLEIKKR_					0	0	0			REV__ENSG00000149311|ENST00000675843|ATM	REV__ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	OvCa9_classI_Rep2	2	457.6080322265625	3	457.61	1369.80817	-3.7462	-0.0017143	-0.70205	-0.00032127	-4.4483	-0.0020356	457.60971240856696	157.06	2.9403	156.83	155.39	158.33	-0.22696					220	89	3	0	0	0	0.72542	1	15988	15988		10.104	0.8921	1	46638	+		21260	20157	17350	17373	23638	23638					0.13805871828026284
IVFAGAIPIFI	11	Unmodified	_IVFAGAIPIFI_					0	0	0		tr|A0A553SPG7|A0A553SPG7_NIACIAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_26175PE=3SV=1	tr|A0A553SPG7|A0A553SPG7_NIACIAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_26175PE=3SV=1	tr|A0A553SPG7|A0A553SPG7_NIACIAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_26175PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	580.8592529296875	2	580.857535	1159.70052	0.58654	0.0003407	1.4197	0.00082464	2.0062	0.0011653	580.8581786013297	153.9	2.0826	153.9	153.5	155.58	0					118	41	4	0	0	0	0.26403	1	18039	18039		71.378	14.657	1	597830			21261	34041	17351	17374	23639	23639					0.12705526964646197
IVFAKLVNI	9	Unmodified	_IVFAKLVNI_					0	0	0			REV__ENSG00000215251|ENST00000380266|FASTKD5	REV__ENSG00000215251|ENST00000380266|FASTKD5	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.2837219238281	2	508.828778	1015.643	-1.2876	-0.00065516	-2.8666	-0.0014586	-4.1542	-0.0021138	508.827212594263	83.725	2.3367	81.464	80.319	82.655	-2.261					68	48	2	0	0	0	0.027392	1	4689	4689		73.975	8.1716	1	40995	+		21262	23315	17352	17375	23640	23640					0.1358068475908567
IVFANSVK	8	Unmodified	_IVFANSVK_					0	0	0		L1PA8A_dup160|chr1:247133953-247136664:+|1.5135014545884105|0.4971293307696565|1.61|429.0|156|3|anti-sense	L1PA8A_dup160|chr1:247133953-247136664:+|1.5135014545884105|0.4971293307696565|1.61|429.0|156|3|anti-sense	L1PA8A_dup160|chr1:247133953-247136664:+|1.5135014545884105|0.4971293307696565|1.61|429.0|156|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	439.26153564453125	2	439.260728	876.506903	-1.0479	-0.0004603	0.96145	0.00042233	-0.086459	-3.7978E-05	439.2609968620854	71.844	2.2359	68.388	67.924	70.16	-3.4563					103	45	3	0	0	0	0.56195	1	5506	5506		71.296	3.802	1	835890			21263	14769	17353	17376	23641	23641					0.06370990248422004
IVFAPIIGW	9	Unmodified	_IVFAPIIGW_					0	0	0		tr|A0A553SFE2|A0A553SFE2_NIACIPeptideMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_08705PE=3SV=1	tr|A0A553SFE2|A0A553SFE2_NIACIPeptideMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_08705PE=3SV=1	tr|A0A553SFE2|A0A553SFE2_NIACIPeptideMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_08705PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.3026428222656	2	508.302396	1014.59024	-0.76419	-0.00038844	-0.47339	-0.00024063	-1.2376	-0.00062907	508.30206007936306	82.679	2.0447	79.996	79.298	81.343	-2.6829					138	41	5	0	0	0	0.42921	1	6866	6866		49.211	1.2952	1	2020600			21264	33029	17354	17377	23642	23642					0.08352726696273294
IVFIIFSEF	9	Unmodified	_IVFIIFSEF_					0	0	0			REV__nc|ENSG00000168356|Q9UI33-3|SCN11A	REV__nc|ENSG00000168356|Q9UI33-3|SCN11A	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.8343505859375	2	557.812793	1113.61103	1.2956	0.00072271	-2.4694	-0.0013774	-1.1738	-0.00065474	557.8111507094333	131.73	0.78802	131.73	131.53	132.32	0					31	16	4	0	0	0	0.027441	1	15310	15310		45.952	11.779	1	232920	+		21265	21367	17355	17378	23643	23643					0.05877272285283652
IVFIYGFLQLL	11	Unmodified	_IVFIYGFLQLL_					0	0	0		tr|A0A553SNB0|A0A553SNB0_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_24135PE=4SV=1	tr|A0A553SNB0|A0A553SNB0_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_24135PE=4SV=1	tr|A0A553SNB0|A0A553SNB0_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_24135PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	442.60162353515625	3	442.600442	1324.7795	0.47843	0.00021175	2.7187	0.0012033	3.1971	0.0014151	442.60159734649346	49.766	2.5262	47.006	46.523	49.049	-2.7603					125	50	5	0	0	0	0.65063	1	3191	3191		40.058	2.55	1	549840			21266	33913	17356	17379	23644	23644					0.1300975419894712
IVFKHVLHN	9	Unmodified	_IVFKHVLHN_					0	0	0			REV__ENST00000520145.1_1_11:61608131-61615310:+|nuORF	REV__ENST00000520145.1_1_11:61608131-61615310:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8319702148438	2	553.827101	1105.63965	1.4062	0.00077877	3.9255	0.0021741	5.3317	0.0029528	553.8291816775361	139.45	3.0735	137.95	136.76	139.84	-1.4952					150	61	3	0	0	0	0.69895	1	13567	13567		18.324	0	1	110800	+		21267	19236	17357	17380	23645	23645					0.09105434705088555
IVFKIWLAP	9	Unmodified	_IVFKIWLAP_					0	0	0		OR6P1|p.T48K|1|0.1|ENSG00000186440|chr1:158563462-158563462|G/T|missense_variant	OR6P1|p.T48K|1|0.1|ENSG00000186440|chr1:158563462-158563462|G/T|missense_variant	OR6P1|p.T48K|1|0.1|ENSG00000186440|chr1:158563462-158563462|G/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	544.2969970703125	2	543.839146	1085.66374	1.5392	0.00083707	1.1543	0.00062773	2.6934	0.0014648	543.8395786919444	28.227	0.75276	25.518	25.344	26.096	-2.7097					24	15	2	0	0	0	0.027462	1	549	549		7.6903	0	1	48605			21268	15465	17358	17381	23646	23646					0.12433275138732824
IVFRINHALL	10	Unmodified	_IVFRINHALL_					0	0	0		ENST00000563542.5_1_15:72185266-72338904:-|nuORF;MYO9A|p.E2496Lfs*8|1|0.27|ENSG00000066933|chr15:71826741-71826742|-/AA|frameshift_variant;MYO9A|p.E2496Tfs*17|1|0.24|ENSG00000066933|chr15:71826742-71826743|-/ACCCACCTTTGGGAAGGGAAAAGAGGGTG|frameshift_variant;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;nc|ENSG00000066933|B2RTY4-5|MYO9A;nc|ENSG00000066933|B2RTY4-3|MYO9A	ENST00000563542.5_1_15:72185266-72338904:-|nuORF	ENST00000563542.5_1_15:72185266-72338904:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	598.3150634765625	2	598.369133	1194.72371	1.4563	0.00087138	-2.5196	-0.0015077	-1.0634	-0.0006363	598.3685670134233	108.53	0.65602	107.33	107.06	107.72	-1.1978					22	12	4	0	0	0	0.026871	1	7780	7780		29.15	6.1071	1	35628			21269	1362	17359	17382	23647	23647					0.13413965801987615
IVFVYILI	8	Unmodified	_IVFVYILI_					0	0	0			REV__tr|A0A7D6ZGD0|A0A7D6ZGD0_9CLOTDUF4386domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17900PE=4SV=1	REV__tr|A0A7D6ZGD0|A0A7D6ZGD0_9CLOTDUF4386domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17900PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	490.3360595703125	2	490.314972	978.615391	0.32731	0.00016048	3.6532	0.0017912	3.9805	0.0019517	490.31691832058954	135.28	0.14713	135.05	134.98	135.13	-0.22696					4	2	2	0	0	0	0.028476	1	13413	13413		43.626	0	1	22696	+		21270	31994	17360	17383	23648	23648					0.1252278149885342
IVFYARCLL	9	Unmodified	_IVFYARCLL_					0	0	0			REV__ENST00000607711.1_1_6:15244838-15244892:-|nuORF	REV__ENST00000607711.1_1_6:15244838-15244892:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	549.8312377929688	2	549.312438	1096.61032	-0.22881	-0.00012569	-2.5076	-0.0013775	-2.7364	-0.0015031	549.3116600824299	72.233	1.2856	69.631	68.633	69.919	-2.6023					32	25	2	0	0	0	0.027462	1	3373	3373		40.573	11.423	1	19560	+		21271	28088	17361	17384	23649	23649					0.06588154364590082
IVFYFIYWQFY	11	Unmodified	_IVFYFIYWQFY_					0	0	0			REV__nc|ENSG00000149485|O60427-2|FADS1	REV__nc|ENSG00000149485|O60427-2|FADS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2510375976562	3	530.267351	1587.78022	-0.046477	-2.4645E-05	3.6866	0.0019549	3.6402	0.0019303	530.2698852682344	30.905	0.24796	30.905	30.731	30.979	0					6	4	2	0	0	0	0.026525	1	1207	1207		1.523	0	1	45613	+		21272	20165	17362	17385	23650	23650					0.009845488479641062
IVFYFSGSM	9	Unmodified	_IVFYFSGSM_					0	0	0			REV__ENST00000458511.6_1_X:13738041-13752183:-|nuORF	REV__ENST00000458511.6_1_X:13738041-13752183:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.3134155273438	2	525.751879	1049.4892	1.5534	0.0008167	3.2374	0.0017021	4.7908	0.0025188	525.7536514958167	136.14	0.37543	136.14	135.92	136.3	0					12	7	2	0	0	0	0.027462	1	15882	15882		31.955	0	1	57919	+		21273	22831	17363	17386	23651	23651					-0.03356093068737209
IVFYGGYIL	9	Unmodified	_IVFYGGYIL_					0	0	0			REV__tr|A0A7D7A5N9|A0A7D7A5N9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06880PE=4SV=1	REV__tr|A0A7D7A5N9|A0A7D7A5N9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06880PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.8417358398438	2	522.791861	1043.56917	1.4149	0.00073972	0.53302	0.00027866	1.948	0.0010184	522.7918171393518	78.022	0.57816	78.022	77.757	78.335	0					24	13	2	0	0	0	0.027462	1	7898	7898		21.702	0	1	851140	+		21274	32640	17364	17387	23652	23652					0.049127165967547626
IVGATIYFD	9	Unmodified	_IVGATIYFD_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant;AHNAK|p.P895Cfs*7|1|0.12|ENSG00000124942|chr11:62531725-62531735|CCACTTCTGGG/-|frameshift_variant;AHNAK|p.P767Cfs*7|1|0.15|ENSG00000124942|chr11:62532109-62532119|CCACTTCTGGG/-|frameshift_variant;nc|ENSG00000124942|Q09666-2|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep3	3	499.76568603515625	2	499.7633	997.512048	0.8461	0.00042285	2.5175	0.0012581	3.3636	0.001681	499.7649286167221	127.27	5.5139	126.2	124.35	129.86	-1.0715					229	108	5	0	0	0	0.34496	1	10054	10054		57.811	5.5121	1	11725000			21275	3687	17365	17388	23653	23653					0.01319249320374638
IVGCRISHG	9	Carbamidomethyl (C)	_IVGC(Carbamidomethyl (C))RISHG_	IVGC(1)RISHG		IVGC(72)RISHG		0	1	0		ENSG00000186787|ENST00000434397|SPIN2B;ENSG00000147059|ENST00000374906|SPIN2A	ENSG00000186787|ENST00000434397|SPIN2B	ENSG00000186787|ENST00000434397|SPIN2B	MULTI-MSMS	OvCa9_classI_Rep2	2	499.76568603515625	2	499.763643	997.512734	0.42626	0.00021303	2.3823	0.0011906	2.8085	0.0014036	499.76512722989173	126.31	4.05	126.07	125.5	129.55	-0.2359					192	81	3	0	0	0	0.22621	1	12437	12437		71.877	10.906	1	11682000			21276	5326	17366	17389	23654	23654	49				0.013877654884595358
IVGEIQRGFPT	11	Unmodified	_IVGEIQRGFPT_					0	0	0		nc|ENSG00000174502|Q7LBE3-2|SLC26A9;ENSG00000174502|ENST00000367135|SLC26A9	nc|ENSG00000174502|Q7LBE3-2|SLC26A9	nc|ENSG00000174502|Q7LBE3-2|SLC26A9	MULTI-SECPEP	OvCa9_classI_Rep2	2	607.8482055664062	2	608.837862	1215.66117	-1.2392	-0.00075445	-1.8415	-0.0011212	-3.0806	-0.0018756	608.8365525286232	68.931	1.2457	66.31	65.918	67.164	-2.6203					57	24	3	0	0	0	0.025239	1	5483	5483		40.778	9.2484	1	145060			21277	15185	17367	17390	23655	23655					0.061967749431460106
IVGEVLQQLT	10	Unmodified	_IVGEVLQQLT_					0	0	0		ENST00000216407.4_1_12:68867655-68868498:+|nuORF	ENST00000216407.4_1_12:68867655-68868498:+|nuORF	ENST00000216407.4_1_12:68867655-68868498:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	550.302978515625	2	550.321514	1098.62847	-1.4901	-0.00082002	-0.61497	-0.00033843	-2.105	-0.0011584	550.3208665530433	62.99	0.36976	60.246	60.004	60.374	-2.7444					11	6	3	0	0	0	0.028155	1	4749	4749		93.195	0	1	26373			21278	9674	17368	17391	23656	23656					0.08310567820285542
IVGEVLQQLT	10	Unmodified	_IVGEVLQQLT_					0	0	0		ENST00000216407.4_1_12:68867655-68868498:+|nuORF	ENST00000216407.4_1_12:68867655-68868498:+|nuORF	ENST00000216407.4_1_12:68867655-68868498:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.3040161132812	2	550.321514	1098.62847	-0.45143	-0.00024843	1.23	0.00067691	0.7786	0.00042848	550.3223281587503	63.703	0.38174	60.228	59.916	60.298	-3.475					14	7	3	0	0	0	0.028155	1	4495	4495		93.195	0	1	118730			21279	9674	17368	17391	23657	23657					0.08310567820285542
IVGISIILSH	10	Unmodified	_IVGISIILSH_					0	0	0		tr|A0A553SFZ3|A0A553SFZ3_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09750PE=4SV=1	tr|A0A553SFZ3|A0A553SFZ3_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09750PE=4SV=1	tr|A0A553SFZ3|A0A553SFZ3_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09750PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.773681640625	2	526.329142	1050.64373	-0.035448	-1.8657E-05	-0.0054432	-2.8649E-06	-0.040891	-2.1522E-05	526.3291337806166	62.995	0.32373	62.995	62.816	63.14	0					10	7	2	0	0	0	0.026871	1	5658	5658		37.159	0	1	191520			21280	33097	17369	17392	23658	23658					0.12043479408134772
IVGISSLVEKD	11	Unmodified	_IVGISSLVEKD_					0	0	0		nc|ENSG00000138468|Q9BQF6-2|SENP7;ENSG00000138468|ENST00000394095|SENP7;nc|ENSG00000138468|Q9BQF6-4|SENP7;nc|ENSG00000138468|Q9BQF6-5|SENP7	nc|ENSG00000138468|Q9BQF6-2|SENP7	nc|ENSG00000138468|Q9BQF6-2|SENP7	MULTI-MSMS	OvCa99_classI_Rep5	1	580.3387451171875	2	580.332079	1158.6496	-1.2607	-0.00073163	4.2187	0.0024483	2.958	0.0017166	580.3344939595904	104.52	2.9963	104.52	103.89	106.89	0					197	68	6	0	0	0	0.65063	1	11802	11802		40.058	0.80534	1	65637000			21281	4691	17370	17393	23659	23659					0.07662533129132498
IVGKKYLLASG	11	Unmodified	_IVGKKYLLASG_					0	0	0			REV__nc|ENSG00000214595|Q6ZMW3-2|EML6	REV__nc|ENSG00000214595|Q6ZMW3-2|EML6	MULTI-SECPEP	OvCa9_classI_Rep2	2	575.8489379882812	2	574.855524	1147.69649	0.81031	0.00046581	-1.2502	-0.00071871	-0.43992	-0.00025289	574.8547253268348	87.807	1.2754	86.375	86.04	87.315	-1.4311					40	25	2	0	0	0	0.025746	1	7731	7731		32.812	0.85756	1	41023	+		21282	29130	17371	17394	23660	23660					0.1285543747092106
IVGKTPGTL	9	Unmodified	_IVGKTPGTL_					0	0	0			REV__nc|ENSG00000175471|Q6DN14-5|MCTP1	REV__nc|ENSG00000175471|Q6DN14-5|MCTP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	443.27508544921875	2	443.273835	884.533118	-0.83909	-0.00037194	0.71136	0.00031533	-0.12773	-5.6617E-05	443.2740437200295	69.706	1.2701	66.225	65.762	67.032	-3.4812					66	25	3	0	0	0	0.094616	1	5219	5219		98.629	10.875	1	963180	+		21283	21899	17372	17395	23661	23661					0.08623259419914575
IVGKTPGTL	9	Unmodified	_IVGKTPGTL_					0	0	0			REV__nc|ENSG00000175471|Q6DN14-5|MCTP1	REV__nc|ENSG00000175471|Q6DN14-5|MCTP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	443.273835	884.533118	0.7798	0.00034567	-0.77675	-0.00034431	0.0030563	1.3548E-06	443.27339461592686	68.812	1.2439	66.192	65.671	66.915	-2.6203	-0.016263	-0.0007291	NaN	98.629	60	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255320	+		21284	21899	17372	17395							0.08623259419914575
IVGLLVKIT	9	Unmodified	_IVGLLVKIT_					0	0	0			REV__nc|ENSG00000188916|Q6ZSG2-2|INSYN2A	REV__nc|ENSG00000188916|Q6ZSG2-2|INSYN2A	MULTI-SECPEP	OvCa9_classI_Rep3	3	479.32012939453125	2	478.331153	954.647754	-0.31033	-0.00014844	-1.0357	-0.00049542	-1.3461	-0.00064386	478.3304253158029	100.77	1.4953	99.169	98.898	100.39	-1.6053					66	28	3	0	0	0	0.027462	1	6898	6898		35.618	12.576	1	200470	+		21285	22749	17373	17396	23662	23662					0.16861568901833834
IVGMIEPVK	9	Unmodified	_IVGMIEPVK_					0	0	0			REV__nc|ENSG00000101353|Q9H579|MROH8	REV__nc|ENSG00000101353|Q9H579|MROH8	MULTI-MSMS	OvCa9_classI_Rep2	2	493.29296875	2	493.291171	984.567789	-0.24876	-0.00012271	3.6528	0.0018019	3.4041	0.0016792	493.292822764803	32.904	0.79625	30.194	29.976	30.772	-2.7097					37	15	3	0	0	0	0.55588	1	1138	1138		37.159	3.6435	1	162900	+		21286	17494	17374	17397	23663	23663					0.07488759236343867
IVGMQLMIL	9	Unmodified	_IVGMQLMIL_					0	0	0			REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|283|1|anti-sense	REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|283|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.8016662597656	2	509.295399	1016.57624	0.8333	0.00042439	4.3595	0.0022203	5.1928	0.0026446	509.29647024797856	97.044	1.4076	94.619	94.067	95.474	-2.4256					91	27	4	0	0	0	0.32337	1	8572	8572		60.294	4.7898	1	524980	+		21287	28207	17375	17398	23664	23664					0.06861989881315367
IVGMQLMIL	9	Unmodified	_IVGMQLMIL_					0	0	0			REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|283|1|anti-sense	REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|283|1|anti-sense	MULTI-MATCH	OvCa9_classI_Rep3	3		2	509.295399	1016.57624	-1.0129	-0.00051586	6.314	0.0032157	5.3011	0.0026998	509.29742606525195	96.242	1.8181	94.413	93.682	95.5	-1.8286	-0.10278	0.00089604	NaN	60.294	125	35	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	454320	+		21288	28207	17375	17398							0.06861989881315367
IVGMQLMIL	9	Unmodified	_IVGMQLMIL_					0	0	0			REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|283|1|anti-sense	REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|283|1|anti-sense	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	509.295399	1016.57624	0.8333	0.00042439	4.3595	0.0022203	5.1928	0.0026446	509.29647024797856	97.044	1.4076	94.619	94.067	95.474	-2.4256	0.10278	-0.0010949	NaN	60.294	91	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	524980	+		21289	28207	17375	17398							0.06861989881315367
IVGRTITID	9	Unmodified	_IVGRTITID_					0	0	0		tr|A0A7D6ZGT4|A0A7D6ZGT4_9CLOTNADPH-dependentglutamatesynthaseOS=ClostridiumintestinaleOX=36845GN=gltAPE=4SV=1	tr|A0A7D6ZGT4|A0A7D6ZGT4_9CLOTNADPH-dependentglutamatesynthaseOS=ClostridiumintestinaleOX=36845GN=gltAPE=4SV=1	tr|A0A7D6ZGT4|A0A7D6ZGT4_9CLOTNADPH-dependentglutamatesynthaseOS=ClostridiumintestinaleOX=36845GN=gltAPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.30438232421875	2	494.295299	986.576045	-0.36474	-0.00018029	-1.501	-0.00074194	-1.8657	-0.00092223	494.2945855102033	99.246	1.0431	98.353	98.057	99.1	-0.89306					45	20	3	0	0	0	0.027462	1	9025	9025		25.45	8.977	1	47018			21290	35551	17376	17399	23665	23665					0.08222029477337855
IVGSKLFL	8	Unmodified	_IVGSKLFL_					0	0	0			REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B	REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B	MULTI-MSMS	OvCa99_classI_Rep5	1	438.78253173828125	2	438.781296	875.54804	3.2725	0.0014359	-0.91488	-0.00040143	2.3576	0.0010345	438.78077016024656	82.761	0.64082	82.761	82.437	83.078	0					31	14	3	0	0	0	0.33245	1	8580	8580		101.21	9.0209	1	1196100	+		21291	17017	17377	17400	23666	23666					0.10528751287893101
IVGVENVLLT	10	Unmodified	_IVGVENVLLT_					0	0	0		ENST00000595560.1_1_19:58067392-58071050:-|nuORF	ENST00000595560.1_1_19:58067392-58071050:-|nuORF	ENST00000595560.1_1_19:58067392-58071050:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	528.8190307617188	2	528.818607	1055.62266	-1.8461	-0.00097626	1.3839	0.00073181	-0.46227	-0.00024446	528.8193433242341	138.41	0.88116	137.35	137.05	137.93	-1.0595					31	17	2	0	0	0	0.762	1	11307	11307		23.523	1.5628	1	41430			21292	14176	17378	17401	23667	23667					0.09707469308614236
IVGVLLCENIL	11	Carbamidomethyl (C)	_IVGVLLC(Carbamidomethyl (C))ENIL_	IVGVLLC(1)ENIL		IVGVLLC(42)ENIL		0	1	0		ENST00000409472.5_1_19:1925936-1926008:+|nuORF	ENST00000409472.5_1_19:1925936-1926008:+|nuORF	ENST00000409472.5_1_19:1925936-1926008:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	414.91162109375	3	414.909058	1241.70534	0.0085316	3.5398E-06	4.0185	0.0016673	4.027	0.0016708	414.9105620628424	53.445	0.63917	53.445	53.214	53.854	0					31	14	3	0	0	0	0.62561	1	4261	4261		42.338	8.4164	1	1298300			21293	11528	17379	17402	23668	23668	120				0.09416043045098377
IVHGKPGI	8	Unmodified	_IVHGKPGI_					0	0	0			REV__ENSG00000132591|ENST00000254928|ERAL1;REV__ENST00000471992.1_1_17:27185141-27187568:+|nuORF	REV__ENSG00000132591|ENST00000254928|ERAL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.22235107421875	2	410.755613	819.496673	1.1725	0.0004816	-0.6988	-0.00028704	0.47368	0.00019457	410.7552384093803	70.804	0.58031	70.804	70.528	71.109	0					25	14	2	0	0	0	0.028476	1	6808	6808		28.254	6.5519	1	213360	+		21294	19089;26299	17380	17403	23669	23669					0.07970427313853179
IVHIFSFL	8	Unmodified	_IVHIFSFL_					0	0	0		ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	MULTI-MSMS	OvCa9_classI_Rep3	3	488.2843933105469	2	488.286746	974.558939	-1.3295	-0.0006492	-3.4251	-0.0016724	-4.7546	-0.0023216	488.28498397664265	100.97	1.7392	99.369	98.706	100.45	-1.6053					76	33	4	0	0	0	0.69415	1	6901	6901		44.531	0	1	591300			21295	6554	17381	17404	23670	23670					0.07064153662179251
IVHKVYFLI	9	Unmodified	_IVHKVYFLI_					0	0	0			REV__ENST00000276569.7_1_8:66516226-66516463:-|nuORF	REV__ENST00000276569.7_1_8:66516226-66516463:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.2987060546875	2	566.349877	1130.6852	2.0483	0.00116	4.0984	0.0023211	6.1466	0.0034812	566.3517225236853	134.67	0.47104	134.67	134.52	134.99	0					16	10	2	0	0	0	0.027462	1	15713	15713		19.36	1.0356	1	191210	+		21296	24099	17382	17405	23671	23671					0.1250866016746386
IVHQGSQF	8	Unmodified	_IVHQGSQF_					0	0	0			REV__ENSG00000073969|ENST00000398238|NSF	REV__ENSG00000073969|ENST00000398238|NSF	MULTI-MSMS	OvCa99_classI_Rep5	1	458.2373962402344	2	458.237784	914.461016	-0.20373	-9.3356E-05	1.64	0.00075151	1.4363	0.00065815	458.2386290080502	41.174	1.013	41.174	40.711	41.724	0					34	22	3	0	0	0	0.56195	1	2555	2555		71.296	7.9894	1	537250	+		21297	16944	17383	17406	23672	23672					0.0003634506618936939
IVHVIQERL	9	Unmodified	_IVHVIQERL_					0	0	0		nc|ENSG00000102081|Q06787-11|FMR1;nc|ENSG00000102081|Q06787-10|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8392333984375	2	553.837665	1105.66078	-0.20085	-0.00011124	3.195	0.0017695	2.9941	0.0016583	553.8393635694105	102.91	1.6773	102.23	101.79	103.46	-0.68459					110	33	4	0	0	0	0.40667	1	9502	9502		51.335	3.4199	1	671320			21298	14932	17384	17407	23673	23673					0.11217400013947554
IVICFTLIL	9	Unmodified	_IVICFTLIL_					0	0	0			REV__tr|A0A7D7AFL3|A0A7D7AFL3_9CLOTATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06135PE=3SV=1	REV__tr|A0A7D7AFL3|A0A7D7AFL3_9CLOTATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06135PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	517.8200073242188	2	517.819564	1033.62458	0.65328	0.00033828	-0.30414	-0.00015749	0.34913	0.00018079	517.8192290042126	150.79	1.1612	150.79	150.44	151.6	0					68	22	4	0	0	0	0.50066	1	17637	17637		42.474	1.9018	1	403000	+		21299	32717	17385	17408	23674	23674					0.10910806792890071
IVIDKVKGMEI	11	Unmodified	_IVIDKVKGMEI_					0	0	0			REV__ENSG00000100564|ENST00000216452|PIGH	REV__ENSG00000100564|ENST00000216452|PIGH	MULTI-MSMS	OvCa9_classI_Rep3	3	622.867919921875	2	622.867774	1243.72099	0.88915	0.00055382	-3.5227	-0.0021942	-2.6335	-0.0016403	622.8654000115959	131.71	1.5392	130.58	130.24	131.78	-1.1249					80	30	4	0	0	0	0.65063	1	10559	10559		40.058	3.6114	1	257180	+		21300	17430	17386	17409	23675	23675					0.10888329562180843
IVIDPKNPL	9	Unmodified	_IVIDPKNPL_					0	0	0		ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENSG00000004897|ENST00000066544|CDC27	ENSG00000004897|ENST00000066544|CDC27	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.30645751953125	2	504.808042	1007.60153	2.5268	0.0012756	0.25809	0.00013029	2.7849	0.0014059	504.8078392035926	94.51	0.76915	94.51	94.264	95.033	0					28	17	3	0	0	0	0.02557	1	10291	10291		143.89	45.257	1	1017500			21301	837	17387	17410	23676	23676					0.0980350399973986
IVIENQVSKIL	11	Unmodified	_IVIENQVSKIL_					0	0	0			REV__tr|A0A7D6ZRV2|A0A7D6ZRV2_9CLOTIS110familytransposaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04945PE=4SV=1	REV__tr|A0A7D6ZRV2|A0A7D6ZRV2_9CLOTIS110familytransposaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04945PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	628.38232421875	2	628.384645	1254.75474	-4.0512	-0.0025457	0.66972	0.00042084	-3.3814	-0.0021248	628.3849132400738	150.53	4.7174	149.58	148	152.71	-0.95647					178	94	2	0	0	0	0.69808	1	12933	12933		30.318	5.7985	1	419100	+		21302	32167	17388	17411	23677	23677					0.1375507432555878
IVIFTGTRGI	10	Unmodified	_IVIFTGTRGI_					0	0	0			REV__ENSG00000179295|ENST00000351677|PTPN11	REV__ENSG00000179295|ENST00000351677|PTPN11	MULTI-MSMS	OvCa9_classI_Rep2	2	538.826416015625	2	538.826766	1075.63898	0.036954	1.9912E-05	-1.0034	-0.00054068	-0.96648	-0.00052077	538.8262542166998	91.851	2.953	90.615	90.272	93.225	-1.2355					156	56	5	0	0	0	0.45225	1	8207	8207		60.972	9.6365	1	2991400	+		21303	22117	17389	17412	23678	23678					0.10418595265377917
IVIHTSEGAI	10	Unmodified	_IVIHTSEGAI_					0	0	0		tr|A0A553SNU9|A0A553SNU9_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	tr|A0A553SNU9|A0A553SNU9_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	tr|A0A553SNU9|A0A553SNU9_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.3118286132812	2	520.292756	1038.57096	0.07121	3.705E-05	-1.3808	-0.0007184	-1.3096	-0.00068135	520.2925127600473	81.195	0.54405	81.195	80.91	81.455	0					19	12	2	0	0	0	0.026982	1	8374	8374		38.806	16.846	1	359360			21304	33964	17390	17413	23679	23679					0.053217256147036096
IVIHTSEGAI	10	Unmodified	_IVIHTSEGAI_					0	0	0		tr|A0A553SNU9|A0A553SNU9_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	tr|A0A553SNU9|A0A553SNU9_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	tr|A0A553SNU9|A0A553SNU9_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3113403320312	2	520.292756	1038.57096	0.82105	0.00042719	-0.94529	-0.00049183	-0.12424	-6.464E-05	520.2920505066411	84.849	0.33846	82.202	82.072	82.411	-2.6463					8	6	2	0	0	0	0.026822	1	7129	7129		47.916	16.386	1	63579			21305	33964	17390	17413	23680	23680					0.053217256147036096
IVIIDHQI	8	Unmodified	_IVIIDHQI_					0	0	0			REV__tr|A0A553SG02|A0A553SG02_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_09805PE=4SV=1	REV__tr|A0A553SG02|A0A553SG02_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_09805PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	475.7869873046875	2	475.78711	949.559667	-1.1284	-0.0005369	1.2052	0.00057342	0.07677	3.6526E-05	475.7874490810867	140.15	0.93607	139.11	138.74	139.68	-1.0339					36	18	3	0	0	0	0.73288	1	11546	11546		35.201	1.6851	1	94016	+		21306	29643	17391	17414	23681	23681					0.08286948311229025
IVIILGILGE	10	Unmodified	_IVIILGILGE_					0	0	0			REV__tr|A0A7D6ZSW5|A0A7D6ZSW5_9CLOTSPFH/Band7/PHBdomainproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09210PE=4SV=1	REV__tr|A0A7D6ZSW5|A0A7D6ZSW5_9CLOTSPFH/Band7/PHBdomainproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09210PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.3095092773438	2	520.341718	1038.66888	-0.42446	-0.00022086	-2.4947	-0.0012981	-2.9191	-0.001519	520.3403256640765	83.898	0.26067	82.352	82.275	82.535	-1.5462					6	4	2	0	0	0	0.026939	1	7215	7215		24.203	0	1	16428	+		21307	32194	17392	17415	23682	23682					0.15109534210705533
IVIKERPAL	9	Unmodified	_IVIKERPAL_					0	0	0			REV__CDC42BPB|p.S1423Ffs*2|1|0.11|ENSG00000198752|chr14:102944030-102944031|AG/-|frameshift_variant	REV__CDC42BPB|p.S1423Ffs*2|1|0.11|ENSG00000198752|chr14:102944030-102944031|AG/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.3263549804688	2	519.837134	1037.65972	1.1206	0.00058252	-1.5918	-0.00082749	-0.47123	-0.00024496	519.8360968561914	113.36	1.376	112.29	111.86	113.23	-1.0753					72	26	5	0	0	0	0.027462	1	8417	8417		47.916	12.297	1	172990	+		21308	15764	17393	17416	23683	23683					0.14239185645033103
IVIKKSGT	8	Unmodified	_IVIKKSGT_					0	0	0		tr|A0A553ST37|A0A553ST37_NIACIDUF1565domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04340PE=3SV=1	tr|A0A553ST37|A0A553ST37_NIACIDUF1565domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04340PE=3SV=1	tr|A0A553ST37|A0A553ST37_NIACIDUF1565domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04340PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	423.2752990722656	2	423.276378	844.538203	-1.0746	-0.00045487	-1.9263	-0.00081535	-3.0009	-0.0012702	423.27545611036373	140.26	1.6211	140.03	139.45	141.07	-0.22696					84	32	4	0	0	0	0.74394	1	13985	13985		13.775	0	1	166850			21309	34451	17394	17417	23684	23684					0.10971563282521402
IVILHWKI	8	Unmodified	_IVILHWKI_					0	0	0		tr|A0A553SPD7|A0A553SPD7_NIACIDUF3397domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26020PE=4SV=1	tr|A0A553SPD7|A0A553SPD7_NIACIDUF3397domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26020PE=4SV=1	tr|A0A553SPD7|A0A553SPD7_NIACIDUF3397domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26020PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.3124084472656	2	511.331488	1020.64842	-1.0714	-0.00054787	0.71263	0.00036439	-0.35882	-0.00018348	511.3323414620748	54.098	0.35857	50.85	50.722	51.081	-3.2474					8	6	2	0	0	0	0.028476	1	3326	3326		15.636	6.8139	1	16064			21310	34031	17395	17418	23685	23685					0.13892408341541795
IVILRNCL	8	Unmodified	_IVILRNCL_					0	0	0			REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|299|2|anti-sense	REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|299|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	472.28802490234375	2	472.291505	942.568457	-3.3722	-0.0015927	-4.4722	-0.0021122	-7.8444	-0.0037048	472.2892568382278	150.85	1.4757	150.62	150.22	151.7	-0.22697					85	29	4	0	0	0	0.75991	1	15354	15354		21.702	0	1	396600	+		21311	28209	17396	17419	23686	23686					0.09487598676037123
IVINRDDVQG	10	Unmodified	_IVINRDDVQG_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	MULTI-MSMS	OvCa99_classI_Rep5	1	564.8051147460938	2	564.80402	1127.59349	0.1821	0.00010285	0.13655	7.7122E-05	0.31865	0.00017997	564.8040739128777	71.212	0.84148	71.212	70.994	71.835	0					35	20	2	0	0	0	0.48198	1	6870	6870		56.721	5.3856	1	5314600			21312	8046	17397	17420	23687	23687					0.03479325012312984
IVIPMQVL	8	Unmodified	_IVIPMQVL_					0	0	0		ENSG00000125734|ENST00000264080|GPR108	ENSG00000125734|ENST00000264080|GPR108	ENSG00000125734|ENST00000264080|GPR108	MULTI-SECPEP	OvCa9_classI_Rep3	3	456.7972106933594	2	456.782982	911.55141	0.40593	0.00018542	-1.8863	-0.00086164	-1.4804	-0.00067622	456.78247404092303	104.95	0.31375	103.6	103.52	103.83	-1.3482					7	5	2	0	0	0	0.028476	1	7357	7357		77.944	8.8509	1	10434			21313	3728	17398	17421	23688	23688					0.09209678070249083
IVIPMVSLFIL	11	Unmodified	_IVIPMVSLFIL_					0	0	0		tr|A0A7D6ZYA2|A0A7D6ZYA2_9CLOTDUF2975domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01375PE=4SV=1	tr|A0A7D6ZYA2|A0A7D6ZYA2_9CLOTDUF2975domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01375PE=4SV=1	tr|A0A7D6ZYA2|A0A7D6ZYA2_9CLOTDUF2975domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01375PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.5585021972656	3	415.594411	1243.7614	0.24634	0.00010238	-2.2539	-0.0009367	-2.0075	-0.00083432	415.92784437423364	55.62	0.20249	55.62	55.52	55.723	0					5	4	2	0	0	0	0.025955	1	4571	4571		30.569	9.7317	1	42470			21314	35912	17399	17422	23689	23689					0.14927295952588793
IVIPPSIDPL	10	Unmodified	_IVIPPSIDPL_					0	0	0			REV__ENSG00000058056|ENST00000263966|USP13	REV__ENSG00000058056|ENST00000263966|USP13	MULTI-SECPEP	OvCa9_classI_Rep2	2	531.8009643554688	2	532.323525	1062.6325	-1.9037	-0.0010134	1.3378	0.00071216	-0.56586	-0.00030122	532.3240239993144	116.47	1.5339	116.35	115.97	117.51	-0.12869					45	30	2	0	0	0	0.026871	1	11248	11248		29.15	0	1	43941	+		21315	16723	17400	17423	23690	23690					0.10368657313983931
IVIQQGRLI	9	Unmodified	_IVIQQGRLI_					0	0	0		nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1	nc|ENSG00000102038|P28370-2|SMARCA1	nc|ENSG00000102038|P28370-2|SMARCA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2804565429688	2	520.334759	1038.65496	0.60595	0.0003153	0.97434	0.00050698	1.5803	0.00082228	520.3350105127089	102.06	0.17038	102.06	101.91	102.08	0					5	3	2	0	0	0	0.027417	1	11358	11358		55.504	0.72789	1	60695			21316	2220	17401	17424	23691	23691					0.13718301502285613
IVIQRTPEA	9	Unmodified	_IVIQRTPEA_					0	0	0		ENST00000316059.6_1_11:58352348-58378460:+|nuORF	ENST00000316059.6_1_11:58352348-58378460:+|nuORF	ENST00000316059.6_1_11:58352348-58378460:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.7674560546875	2	513.800749	1025.58694	-0.057618	-2.9604E-05	0.079625	4.0911E-05	0.022007	1.1307E-05	513.7999223516998	59.301	0.84158	55.909	55.604	56.445	-3.392					17	16	2	0	0	0	0.027441	1	4015	4015		29.15	0	1	39593			21317	10340	17402	17425	23692	23692					0.07517431851601941
IVISKVKSNY	10	Unmodified	_IVISKVKSNY_					0	0	0			REV__tr|A0A7D6VR27|A0A7D6VR27_9CLOTNAD(P)/FAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17575PE=4SV=1	REV__tr|A0A7D6VR27|A0A7D6VR27_9CLOTNAD(P)/FAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17575PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8432006835938	2	575.845156	1149.67576	-2.8608	-0.0016474	-0.58729	-0.00033819	-3.4481	-0.0019856	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.70152	1	14756	14756		30.318	6.115	1	356230	+		21318	31382	17403	17426	23693	23693					0.10690847091291289
IVISLMLALF	10	Unmodified	_IVISLMLALF_					0	0	0			REV__ENSG00000198691|ENST00000370225|ABCA4	REV__ENSG00000198691|ENST00000370225|ABCA4	MULTI-MSMS	OvCa9_classI_Rep3	3	560.340087890625	2	560.345946	1118.67734	-7.144	-0.0040031	-2.9806	-0.0016702	-10.125	-0.0056733	560.3441648343594	161.4	2.0053	160.03	159.58	161.59	-1.3692					105	41	5	0	0	0	0.75594	1	14038	14038		24.203	3.2558	1	475740	+		21319	23044	17404	17427	23694	23694					0.12274764855646936
IVISLTLTT	9	Unmodified	_IVISLTLTT_					0	0	0		nc|ENSG00000160325|Q9UGQ2-2|CACFD1;ENSG00000160325|ENST00000316948|CACFD1;nc|ENSG00000160325|Q9UGQ2-3|CACFD1;nc|ENSG00000160325|Q9UGQ2-4|CACFD1	nc|ENSG00000160325|Q9UGQ2-2|CACFD1	nc|ENSG00000160325|Q9UGQ2-2|CACFD1	MULTI-MSMS	OvCa9_classI_Rep2	2	480.801025390625	2	480.802426	959.590298	-3.5276	-0.0016961	0.58103	0.00027936	-2.9466	-0.0014167	480.80256125573777	150.83	1.6209	150.61	150.17	151.79	-0.22696					93	32	4	0	0	0	0.6653	1	15353	15353		24.203	4.8428	1	676150			21320	6058	17405	17428	23695	23695					0.10888681905601061
IVISLTLTT	9	Unmodified	_IVISLTLTT_					0	0	0		nc|ENSG00000160325|Q9UGQ2-2|CACFD1;ENSG00000160325|ENST00000316948|CACFD1;nc|ENSG00000160325|Q9UGQ2-3|CACFD1;nc|ENSG00000160325|Q9UGQ2-4|CACFD1	nc|ENSG00000160325|Q9UGQ2-2|CACFD1	nc|ENSG00000160325|Q9UGQ2-2|CACFD1	MULTI-MSMS	OvCa9_classI_Rep3	3	480.8006896972656	2	480.802426	959.590298	-4.4906	-0.0021591	1.5471	0.00074384	-2.9435	-0.0014153	480.8030459689351	151.04	2.008	150.08	149.7	151.71	-0.95647					103	39	4	0	0	0	0.53957	1	12908	12908		38.806	17.104	1	1013500			21321	6058	17405	17428	23696	23696					0.10888681905601061
IVISSLRPW	9	Unmodified	_IVISSLRPW_					0	0	0		ENST00000424010.1_1_2:223185432-223186372:+|nuORF	ENST00000424010.1_1_2:223185432-223186372:+|nuORF	ENST00000424010.1_1_2:223185432-223186372:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.8179931640625	2	535.821484	1069.62842	-6.0872	-0.0032616	-0.34987	-0.00018747	-6.4371	-0.0034491	535.8212122095977	156.94	0.82646	155.4	155.1	155.93	-1.545					50	23	3	0	0	0	0.70177	1	15518	15518		17.365	1.7232	1	85196			21322	11709	17406	17429	23697	23697					0.09638612610933706
IVITETNALCF	11	Unmodified	_IVITETNALCF_					0	0	0			REV__ENSG00000168994|ENST00000380283|PXDC1	REV__ENSG00000168994|ENST00000380283|PXDC1	MULTI-MSMS	OvCa99_classI_Rep5	1	408.5487976074219	3	408.54953	1222.62676	0.63269	0.00025849	-2.8469	-0.0011631	-2.2142	-0.00090463	408.54830813902674	40.299	0.69345	40.299	40.06	40.754	0					24	14	2	0	0	0	0.69589	1	2442	2442		31.068	2.4914	1	845850	+		21323	21423	17407	17430	23698	23698					0.02435190740015969
IVITRNNVT	9	Unmodified	_IVITRNNVT_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7841186523438	2	515.306198	1028.59784	2.3347	0.0012031	3.7307	0.0019225	6.0655	0.0031256	515.8095759137535	116.23	0.41146	116.23	116	116.42	0					13	8	2	0	0	0	0.027461	1	13293	13293		49.442	5.3247	1	148420			21324	5793;36288	17408	17431	23699	23699					0.08468834225891442
IVKAEKGDF	9	Unmodified	_IVKAEKGDF_					0	0	0			REV__tr|A0A553SMF7|A0A553SMF7_NIACIBeta-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_22515PE=3SV=1	REV__tr|A0A553SMF7|A0A553SMF7_NIACIBeta-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_22515PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	503.7790222167969	2	503.782025	1005.5495	-3.0867	-0.001555	-3.4935	-0.00176	-6.5803	-0.003315	503.78006253314857	36.309	2.2758	33.6	32.75	35.026	-2.7097					126	45	4	0	0	0	0.44294	1	1552	1552		47.916	12.297	1	296190	+		21325	30324	17409	17432	23700	23700					0.046943405859906306
IVKAQVSK	8	Unmodified	_IVKAQVSK_					0	0	0		ENSG00000178852|ENST00000331493|EFCAB13	ENSG00000178852|ENST00000331493|EFCAB13	ENSG00000178852|ENST00000331493|EFCAB13	MULTI-SECPEP	OvCa9_classI_Rep3	3	435.8739929199219	2	436.781828	871.549102	1.2421	0.00054254	3.358	0.0014667	4.6001	0.0020092	436.7830869599839	110.91	1.3518	109.8	109.49	110.84	-1.1038					48	26	3	0	0	0	0.028476	1	8083	8083		15.642	9.3292	1	73440			21326	7781	17410	17433	23701	23701					0.10818965656801538
IVKDSTLTYE	10	Unmodified	_IVKDSTLTYE_					0	0	0		tr|A0A7D6VXJ5|A0A7D6VXJ5_9CLOTYjjIfamilyglycineradicalenzymeOS=ClostridiumintestinaleOX=36845GN=yjjIPE=4SV=1	tr|A0A7D6VXJ5|A0A7D6VXJ5_9CLOTYjjIfamilyglycineradicalenzymeOS=ClostridiumintestinaleOX=36845GN=yjjIPE=4SV=1	tr|A0A7D6VXJ5|A0A7D6VXJ5_9CLOTYjjIfamilyglycineradicalenzymeOS=ClostridiumintestinaleOX=36845GN=yjjIPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	584.7822875976562	2	584.808436	1167.60232	-2.4135	-0.0014114	1.7845	0.0010436	-0.62898	-0.00036783	584.8111871333358	85.726	0.30059	83.506	83.335	83.636	-2.2204					7	5	2	0	0	0	0.026464	1	5059	5059		69.628	0	1	7856.9			21327	35286	17411	17434	23702	23702					0.025222538581374465
IVKFTPVSL	9	Unmodified	_IVKFTPVSL_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-7|BLTP1;REV__nc|ENSG00000138688|Q2LD37-6|BLTP1	REV__nc|ENSG00000138688|Q2LD37-6|BLTP1	MULTI-SECPEP	OvCa9_classI_Rep3	3	502.2880554199219	2	502.312961	1002.61137	-1.4069	-0.00070673	1.4821	0.00074449	0.075179	3.7763E-05	502.3135584055502	83.894	1.5396	81.633	81.164	82.704	-2.261					81	32	3	0	0	0	0.027462	1	4920	4920		53.351	18.151	1	229110	+		21328	19560;28886	17412	17435	23703	23703					0.11016692005136974
IVKHNEFMG	9	Unmodified	_IVKHNEFMG_					0	0	0			REV__tr|A0A7D6VN75|A0A7D6VN75_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17770PE=4SV=1	REV__tr|A0A7D6VN75|A0A7D6VN75_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17770PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	537.32177734375	2	537.773677	1073.5328	2.2157	0.0011915	3.3599	0.0018069	5.5756	0.0029984	537.7754386666076	120.37	0.53859	119.34	119.07	119.61	-1.0271					17	10	2	0	0	0	0.027462	1	9169	9169		27.882	0	1	40590	+		21329	31162	17413	17436	23704	23704					-0.0010248357161799504
IVKINLIAI	9	Unmodified	_IVKINLIAI_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.832275390625	2	498.844428	995.674303	-0.17481	-8.7204E-05	0.28155	0.00014045	0.10674	5.3245E-05	498.84461474181796	72.745	0.3486	70.257	70.133	70.482	-2.4873					9	6	2	0	0	0	0.027343	1	3492	3492		68.787	22.835	1	12190	+		21330	19568	17414	17437	23705	23705					0.17629257793169018
IVKKNLQFIL	10	Unmodified	_IVKKNLQFIL_					0	0	0			REV__ENST00000555971.1_1_15:93325338-93352935:-|nuORF	REV__ENST00000555971.1_1_15:93325338-93352935:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	405.9314270019531	3	405.932303	1214.77508	0.1148	4.6601E-05	-2.3291	-0.00094545	-2.2143	-0.00089884	405.9313435099257	43.651	1.3057	43.651	43.312	44.618	0					88	29	5	0	0	0	0.73938	1	2930	2930		26.063	3.4837	1	3303700	+		21331	27553	17415	17438	23706	23706					0.17628289776030215
IVKLPDDI	8	Unmodified	_IVKLPDDI_					0	0	0		ENSG00000068885|ENST00000326448|IFT80;nc|ENSG00000068885|Q9P2H3-3|IFT80;ENST00000472773.5_1_3:160075355-160102388:-|nuORF;ENST00000477495.5_1_3:160091401-160102388:-|nuORF	ENSG00000068885|ENST00000326448|IFT80	ENSG00000068885|ENST00000326448|IFT80	MULTI-MSMS	OvCa9_classI_Rep3	3	456.7717590332031	2	456.773668	911.532783	-2.6183	-0.001196	-0.38222	-0.00017459	-3.0005	-0.0013706	456.77340273142477	142.71	1.7302	141.7	141.28	143.01	-1.0106					71	34	3	0	0	0	0.7549	1	11893	11893		24.203	2.2429	1	453300			21332	1400	17416	17439	23707	23707					0.07347839700048553
IVKLPLSRL	9	Unmodified	_IVKLPLSRL_					0	0	0		nc|ENSG00000137817|Q2NL67-2|PARP6;ENSG00000137817|ENST00000569795|PARP6	nc|ENSG00000137817|Q2NL67-2|PARP6	nc|ENSG00000137817|Q2NL67-2|PARP6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.84228515625	2	519.855327	1037.6961	-0.71772	-0.00037311	3.9341	0.0020451	3.2163	0.001672	519.8578684959881	104.69	0.52499	102.57	102.11	102.64	-2.1192					12	9	2	0	0	0	0.027411	1	9441	9441		58.23	0	1	7566.7			21333	4622	17417	17440	23708	23708					0.1787606254174534
IVKLRKKAKY	10	Unmodified	_IVKLRKKAKY_					0	0	0		ENST00000342992.10_3_2:179494164-179495619:-|nuORF	ENST00000342992.10_3_2:179494164-179495619:-|nuORF	ENST00000342992.10_3_2:179494164-179495619:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	623.91748046875	2	623.921532	1245.82851	-5.6275	-0.0035111	-0.80944	-0.00050503	-6.4369	-0.0040161	623.9209249558969	163.4	0.91801	163.18	162.75	163.67	-0.22696					66	30	3	0	0	0	0.94667	1	16649	16649		3.41	0.25078	1	62419			21334	10591	17418	17441	23709	23709					0.21543087278541861
IVKLRKKAKY	10	Unmodified	_IVKLRKKAKY_					0	0	0		ENST00000342992.10_3_2:179494164-179495619:-|nuORF	ENST00000342992.10_3_2:179494164-179495619:-|nuORF	ENST00000342992.10_3_2:179494164-179495619:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	623.91845703125	2	623.921532	1245.82851	-6.4797	-0.0040428	-0.020132	-1.2561E-05	-6.4998	-0.0040554	623.921427734309	164.23	0.12326	162.59	162.52	162.65	-1.6405					6	3	2	0	0	0	0.94667	1	16230	16230		3.41	0	1	165600			21335	10591	17418	17441	23710	23710					0.21543087278541861
IVKNKTEPV	9	Unmodified	_IVKNKTEPV_					0	0	0		nc|ENSG00000166006|Q96PR1-4|KCNC2;nc|ENSG00000166006|Q96PR1-5|KCNC2;nc|ENSG00000166006|Q96PR1-3|KCNC2;nc|ENSG00000166006|Q96PR1-6|KCNC2;nc|ENSG00000166006|Q96PR1-2|KCNC2;ENSG00000166006|ENST00000549446|KCNC2	nc|ENSG00000166006|Q96PR1-4|KCNC2	nc|ENSG00000166006|Q96PR1-4|KCNC2	MULTI-SECPEP	OvCa9_classI_Rep2	2	514.7776489257812	2	514.310949	1026.60735	0.075534	3.8848E-05	-0.21984	-0.00011307	-0.14431	-7.422E-05	514.3115334725653	72.886	0.67699	70.486	70.22	70.897	-2.3999					18	12	2	0	0	0	0.027462	1	5953	5953		31.955	0	1	11628			21336	15153	17419	17442	23711	23711					0.09510602511409161
IVKNNKLLP	9	Unmodified	_IVKNNKLLP_					0	0	0		tr|A0A7D6ZFW8|A0A7D6ZFW8_9CLOTPutativeDNAmodification/repairradicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19660PE=4SV=1	tr|A0A7D6ZFW8|A0A7D6ZFW8_9CLOTPutativeDNAmodification/repairradicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19660PE=4SV=1	tr|A0A7D6ZFW8|A0A7D6ZFW8_9CLOTPutativeDNAmodification/repairradicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19660PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.3109741210938	2	519.837134	1037.65972	-0.80282	-0.00041733	-0.056395	-2.9316E-05	-0.85921	-0.00044665	519.8387055000634	84.318	0.20573	82.772	82.693	82.899	-1.5462					5	3	2	0	0	0	0.027441	1	7264	7264		65.803	44.101	1	6506.2			21337	35527	17420	17443	23712	23712					0.14239185645033103
IVKSKMKLL	9	Unmodified	_IVKSKMKLL_					0	0	0			REV__tr|A0A553SUA1|A0A553SUA1_NIACIBlaR1familybeta-lactamsensor/signaltransducerOS=NialliacirculansOX=1397GN=blaR1PE=3SV=1	REV__tr|A0A553SUA1|A0A553SUA1_NIACIBlaR1familybeta-lactamsensor/signaltransducerOS=NialliacirculansOX=1397GN=blaR1PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.7960815429688	2	530.351563	1058.68857	-1.0903	-0.00057826	-4.1113	-0.0021805	-5.2017	-0.0027587	530.3486905890834	98.354	0.83884	97.461	97.168	98.007	-0.89305					38	16	3	0	0	0	0.027462	1	8911	8911		26.693	15.827	1	74263	+		21338	31055	17421	17444	23713	23713					0.16157586949816505
IVKSLAALS	9	Unmodified	_IVKSLAALS_					0	0	0			REV__ENSG00000187240|ENST00000375735|DYNC2H1	REV__ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MSMS	OvCa9_classI_Rep2	2	451.2890319824219	2	451.289485	900.564418	2.1691	0.00097888	-2.3497	-0.0010604	-0.18064	-8.152E-05	451.2882720515127	73.11	2.1463	70.71	69.959	72.105	-2.3999					108	40	4	0	0	0	0.21395	1	5952	5952		73.975	5.49	1	510520	+		21339	22636	17422	17445	23714	23714					0.11015832453995245
IVKSMITPIG	10	Unmodified	_IVKSMITPIG_					0	0	0			REV__tr|A0A7D6VNF4|A0A7D6VNF4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17625PE=4SV=1	REV__tr|A0A7D6VNF4|A0A7D6VNF4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17625PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	529.8187866210938	2	529.817553	1057.62055	0.96359	0.00051053	2.472	0.0013097	3.4355	0.0018202	529.8187111866282	66.395	1.017	63.449	63.214	64.231	-2.9459					45	19	3	0	0	0	0.6349	1	2744	2744		37.812	11.119	1	173270	+		21340	31178	17423	17446	23715	23715					0.0940471729913952
IVKSMITPIG	10	Unmodified	_IVKSMITPIG_					0	0	0			REV__tr|A0A7D6VNF4|A0A7D6VNF4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17625PE=4SV=1	REV__tr|A0A7D6VNF4|A0A7D6VNF4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17625PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	529.817553	1057.62055	0.11107	5.8845E-05	3.4916	0.0018499	3.6027	0.0019087	529.8192214614722	66.237	0.84463	63.541	63.22	64.064	-2.6958	-0.0079194	0.0003706	NaN	37.812	46	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200160	+		21341	31178	17423	17446							0.0940471729913952
IVKSMITPIG	10	Unmodified	_IVKSMITPIG_					0	0	0			REV__tr|A0A7D6VNF4|A0A7D6VNF4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17625PE=4SV=1	REV__tr|A0A7D6VNF4|A0A7D6VNF4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17625PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	529.817553	1057.62055	-0.18821	-9.9719E-05	3.8542	0.002042	3.666	0.0019423	529.8194483754646	67.147	0.89009	63.657	63.295	64.186	-3.4902	0.10773	0.00075485	NaN	37.812	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249960	+		21342	31178	17423	17446							0.0940471729913952
IVKSVSLKNG	10	Unmodified	_IVKSVSLKNG_					0	0	0		tr|A0A553SNZ5|A0A553SNZ5_NIACIBasal-bodyrodmodificationproteinFlgDOS=NialliacirculansOX=1397GN=flgDPE=3SV=1	tr|A0A553SNZ5|A0A553SNZ5_NIACIBasal-bodyrodmodificationproteinFlgDOS=NialliacirculansOX=1397GN=flgDPE=3SV=1	tr|A0A553SNZ5|A0A553SNZ5_NIACIBasal-bodyrodmodificationproteinFlgDOS=NialliacirculansOX=1397GN=flgDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	522.823486328125	2	522.824224	1043.63389	0.6555	0.00034271	-1.635	-0.00085481	-0.97949	-0.0005121	522.8233249021611	80.518	1.853	78.823	78.124	79.977	-1.6951					130	36	6	0	0	0	0.55359	1	6827	6827		47.657	4.7931	1	1770100			21343	33985	17424	17447	23716	23716					0.1138229140274234
IVKVKGTGPF	10	Unmodified	_IVKVKGTGPF_					0	0	0			REV__ENSG00000155304|ENST00000285667|HSPA13	REV__ENSG00000155304|ENST00000285667|HSPA13	MULTI-MSMS	OvCa9_classI_Rep2	2	523.32373046875	2	523.32386	1044.63317	0.90245	0.00047227	-1.0468	-0.00054782	-0.14435	-7.5541E-05	523.3231203427081	131.19	1.3271	130.96	130.65	131.98	-0.22696					57	26	3	0	0	0	0.62299	1	12961	12961		39.253	3.6345	1	194020	+		21344	20419	17425	17448	23717	23717					0.11263496753713298
IVKVNGTITF	10	Unmodified	_IVKVNGTITF_					0	0	0		nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.D2940Mfs*5|1|0.04|ENSG00000005810|chr13:77098223-77098223|T/-|frameshift_variant	nc|ENSG00000005810|O75592-2|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-MSMS	OvCa9_classI_Rep2	2	546.327880859375	2	546.326599	1090.63865	-0.59086	-0.0003228	-0.12835	-7.012E-05	-0.71921	-0.00039292	546.32648005172	104.57	2.5343	103.99	103.67	106.21	-0.57639					97	50	4	0	0	0	0.42962	1	9708	9708		64.207	2.0999	1	511310			21345	859	17426	17449	23718	23718					0.09695175545516577
IVLAVLVWKV	10	Unmodified	_IVLAVLVWKV_					0	0	0		tr|A0A7D7ACH0|A0A7D7ACH0_9CLOTL-lactatepermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19095PE=3SV=1	tr|A0A7D7ACH0|A0A7D7ACH0_9CLOTL-lactatepermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19095PE=3SV=1	tr|A0A7D7ACH0|A0A7D7ACH0_9CLOTL-lactatepermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19095PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	570.2952270507812	2	570.381177	1138.7478	-0.92582	-0.00052807	3.4644	0.001976	2.5386	0.001448	570.3848020365853	44.527	0.3037	41.489	41.31	41.613	-3.0385					7	5	2	0	0	0	0.027204	1	2199	2199		11.511	0.64546	1	8505.6			21346	36229	17427	17450	23719	23719					0.18397806235634562
IVLCEQYY	8	Unmodified	_IVLCEQYY_					0	0	0			REV__tr|A0A7D7A330|A0A7D7A330_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22105PE=4SV=1	REV__tr|A0A7D7A330|A0A7D7A330_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22105PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7493896484375	2	515.749336	1029.48412	3.5779	0.0018453	0.72868	0.00037581	4.3065	0.0022211	515.7496284830565	132.62	1.8654	131.12	130.75	132.61	-1.5014					104	37	5	0	0	0	0.66992	1	12756	12756		49.442	5.0644	1	443820	+		21347	32566	17428	17451	23720	23720					-0.029443969313661
IVLCFMLSL	9	Unmodified	_IVLCFMLSL_					0	0	0			REV__ENST00000453348.1_1_7:1778478-1778763:-|nuORF	REV__ENST00000453348.1_1_7:1778478-1778763:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	519.7922973632812	2	519.789949	1037.56535	-0.26612	-0.00013833	3.1647	0.001645	2.8986	0.0015067	519.7915045735358	86.083	3.1611	84.593	83.85	87.011	-1.4906					155	62	5	0	0	0	0.25214	1	7494	7494		68.485	2.0554	1	1389900	+		21348	25993	17429	17452	23721	23721					0.04806587507050608
IVLDPEVL	8	Unmodified	_IVLDPEVL_					0	0	0			REV__nc|ENSG00000176225|Q86VV8-3|RTTN	REV__nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-MSMS	OvCa9_classI_Rep2	2	449.2689514160156	2	449.268219	896.521884	3.2258	0.0014492	-1.8722	-0.00084112	1.3536	0.00060812	449.26732371902864	112.43	2.5171	112.3	111.93	114.45	-0.12174					121	50	4	0	0	0	0.65582	1	10665	10665		52.299	7.7681	1	1472600	+		21349	21942	17430	17453	23722	23722					0.06948437325752366
IVLDTKNVDEI	11	Unmodified	_IVLDTKNVDEI_					0	0	0		tr|A0A7D7A3J1|A0A7D7A3J1_9CLOTNAD-dependentmalicenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_23840PE=3SV=1	tr|A0A7D7A3J1|A0A7D7A3J1_9CLOTNAD-dependentmalicenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_23840PE=3SV=1	tr|A0A7D7A3J1|A0A7D7A3J1_9CLOTNAD-dependentmalicenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_23840PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	629.8477783203125	2	629.848093	1257.68163	0.41848	0.00026358	1.1285	0.00071077	1.547	0.00097435	629.8484322050896	91.238	2.6459	90.003	89.341	91.986	-1.2355					108	50	4	0	0	0	0.60035	1	8076	8076		28.081	17.816	1	840130			21350	36118	17431	17454	23723	23723					0.06309900812289015
IVLEGNAKEL	10	Unmodified	_IVLEGNAKEL_					0	0	0		tr|A0A7D7AFM3|A0A7D7AFM3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06245PE=3SV=1	tr|A0A7D7AFM3|A0A7D7AFM3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06245PE=3SV=1	tr|A0A7D7AFM3|A0A7D7AFM3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06245PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.2699584960938	2	543.313689	1084.61282	-0.48708	-0.00026464	-2.0694	-0.0011243	-2.5565	-0.001389	543.3128343912981	48.392	0.16306	48.392	48.292	48.455	0					5	3	2	0	0	0	0.026873	1	3535	3535		80.455	5.4113	1	55810			21351	36258	17432	17455	23724	23724					0.07390281303219126
IVLEMTKP	8	Unmodified	_IVLEMTKP_					0	0	0			REV__ENST00000423536.5_1_20:37049499-37055082:-|nuORF	REV__ENST00000423536.5_1_20:37049499-37055082:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.2381286621094	2	465.770071	929.52559	-1.1427	-0.00053224	3.4088	0.0015877	2.2661	0.0010555	465.7714375466035	44.22	0.91483	41.212	41.088	42.002	-3.0074					32	17	3	0	0	0	0.028476	1	2177	2177		52.299	31.352	1	183680	+		21352	25632	17433	17456	23725	23725					0.058007838279763746
IVLFSILGGI	10	Unmodified	_IVLFSILGGI_					0	0	0		tr|A0A7D7AD35|A0A7D7AD35_9CLOTSporecortexbiosynthesisproteinYabQOS=ClostridiumintestinaleOX=36845GN=yabQPE=4SV=1	tr|A0A7D7AD35|A0A7D7AD35_9CLOTSporecortexbiosynthesisproteinYabQOS=ClostridiumintestinaleOX=36845GN=yabQPE=4SV=1	tr|A0A7D7AD35|A0A7D7AD35_9CLOTSporecortexbiosynthesisproteinYabQOS=ClostridiumintestinaleOX=36845GN=yabQPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.3289794921875	2	516.328611	1030.64267	1.0143	0.0005237	1.0199	0.00052661	2.0342	0.0010503	516.3287329215167	119.34	0.39668	119.34	119.1	119.5	0					11	8	2	0	0	0	0.46756	1	13695	13695		58.782	7.4465	1	156560			21353	36235	17434	17457	23726	23726					0.12857265039247068
IVLFVLYGF	9	Unmodified	_IVLFVLYGF_					0	0	0			REV__ENST00000533005.5_1_11:67811756-67818283:+|nuORF	REV__ENST00000533005.5_1_11:67811756-67818283:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	535.8187866210938	2	535.817879	1069.6212	0.50088	0.00026838	0.2896	0.00015517	0.79049	0.00042356	535.817760027213	161.44	0.50555	161.44	161.16	161.66	0					18	9	3	0	0	0	0.61768	1	18932	18932		29.842	4.2675	1	55816	+		21354	27250	17435	17458	23727	23727					0.08917880010494628
IVLFVLYGF	9	Unmodified	_IVLFVLYGF_					0	0	0			REV__ENST00000533005.5_1_11:67811756-67818283:+|nuORF	REV__ENST00000533005.5_1_11:67811756-67818283:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	535.817879	1069.6212	0.50088	0.00026838	0.2896	0.00015517	0.79049	0.00042356	535.817760027213	161.44	0.50555	161.44	161.16	161.66	0	0	0	NaN	29.842	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55816	+		21355	27250	17435	17458							0.08917880010494628
IVLGHKEILE	10	Unmodified	_IVLGHKEILE_					0	0	0			REV__nc|ENSG00000093167|Q9Y608-2|LRRFIP2	REV__nc|ENSG00000093167|Q9Y608-2|LRRFIP2	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8428955078125	2	575.845156	1149.67576	-4.018	-0.0023138	0.54994	0.00031668	-3.4681	-0.0019971	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.78463	1	12281	12281		20.947	0	1	445630	+		21356	28759	17436	17459	23728	23728					0.10690847091291289
IVLHKIWL	8	Unmodified	_IVLHKIWL_					0	0	0			REV__nc|ENSG00000198732|Q9H4F8|SMOC1	REV__nc|ENSG00000198732|Q9H4F8|SMOC1	MULTI-MSMS	OvCa9_classI_Rep3	3	511.3267517089844	2	511.331488	1020.64842	-5.3558	-0.0027386	-2.9946	-0.0015312	-8.3505	-0.0042698	511.3298778479252	153.96	1.1884	152.95	152.62	153.81	-1.0076					68	24	4	0	0	0	0.74394	1	13177	13177		13.775	0.81615	1	338570	+		21357	23054	17437	17460	23729	23729					0.13892408341564533
IVLHQEDQI	9	Unmodified	_IVLHQEDQI_					0	0	0			REV__ENSG00000170832|ENST00000300896|USP32	REV__ENSG00000170832|ENST00000300896|USP32	MULTI-MSMS	OvCa99_classI_Rep5	1	547.7997436523438	2	547.795663	1093.57677	-0.13586	-7.4421E-05	-0.30897	-0.00016925	-0.44483	-0.00024368	547.7959244340276	105.18	1.2199	105.18	104.66	105.88	0					49	27	4	0	0	0	0.1944	1	11810	11810		77.318	4.4383	1	994060	+		21358	21564	17438	17461	23730	23730					0.03372824126381602
IVLIGNNVLS	10	Unmodified	_IVLIGNNVLS_					0	0	0		tr|A0A7D6ZNC5|A0A7D6ZNC5_9CLOTEndosporegerminationpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15805PE=3SV=1	tr|A0A7D6ZNC5|A0A7D6ZNC5_9CLOTEndosporegerminationpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15805PE=3SV=1	tr|A0A7D6ZNC5|A0A7D6ZNC5_9CLOTEndosporegerminationpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15805PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.7670288085938	2	521.318774	1040.623	-0.61832	-0.00032234	0.047947	2.4996E-05	-0.57037	-0.00029734	521.318617307562	75.916	0.71589	73.544	73.317	74.033	-2.3715					22	13	3	0	0	0	0.026665	1	3906	3906		42.396	0	1	79431			21359	35674	17439	17462	23731	23731					0.10430889028475576
IVLIGPPLSL	10	Unmodified	_IVLIGPPLSL_					0	0	0		ENST00000589498.5_1_18:14101339-14101393:-|nuORF	ENST00000589498.5_1_18:14101339-14101393:-|nuORF	ENST00000589498.5_1_18:14101339-14101393:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	511.33599853515625	2	511.336436	1020.65832	0.67261	0.00034393	-0.86721	-0.00044344	-0.19461	-9.9509E-05	511.33582601620805	126.08	1.3814	125.85	125.5	126.89	-0.23589					66	27	4	0	0	0	0.58282	1	12313	12313		44.117	0	1	172330			21360	14090	17440	17463	23732	23732					0.14881551556277373
IVLIWVVSV	9	Unmodified	_IVLIWVVSV_					0	0	0		nc|ENSG00000136160|P24530-2|EDNRB;ENSG00000136160|ENST00000646607|EDNRB;nc|ENSG00000136160|P24530-3|EDNRB	nc|ENSG00000136160|P24530-2|EDNRB	nc|ENSG00000136160|P24530-2|EDNRB	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.3111572265625	2	514.331153	1026.64775	-2.4488	-0.0012595	-3.1351	-0.0016125	-5.5838	-0.0028719	514.3293679844367	104.18	0.55685	104.18	103.98	104.54	0					30	12	3	0	0	0	0.027462	1	11676	11676		19.36	0	1	425670			21361	4467	17441	17464	23733	23733					0.13549568901839848
IVLLFYLKQT	10	Unmodified	_IVLLFYLKQT_					0	0	0			REV__SETD2|p.E983Kfs*23|1|0.1|ENSG00000181555|chr3:47121689-47121689|C/-|frameshift_variant	REV__SETD2|p.E983Kfs*23|1|0.1|ENSG00000181555|chr3:47121689-47121689|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	619.346435546875	2	619.381374	1236.7482	0.77109	0.0004776	2.1101	0.0013069	2.8812	0.0017845	619.3847658690459	150.95	0.15009	150.95	150.84	150.99	0					4	2	2	0	0	0	0.027056	1	17675	17675		27.882	7.8855	1	6657.2	+		21362	29354	17442	17465	23734	23734					0.13929181164826332
IVLLHMLLS	9	Unmodified	_IVLLHMLLS_					0	0	0		ENSG00000058799|ENST00000072644|YIPF1;nc|ENSG00000058799|Q9Y548-2|YIPF1;YIPF1|p.V274Gfs*58|1|0.12|ENSG00000058799|chr1:53866210-53866210|A/-|frameshift_variant	ENSG00000058799|ENST00000072644|YIPF1	ENSG00000058799|ENST00000072644|YIPF1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.30810546875	2	519.822638	1037.63072	-0.49927	-0.00025953	3.3985	0.0017666	2.8992	0.0015071	519.8240773950192	60.445	0.73757	57.675	57.238	57.976	-2.7702					17	13	2	0	0	0	0.027462	1	4483	4483		12.959	0	1	25939			21363	1249	17443	17466	23735	23735					0.11341325024386606
IVLLIVTRI	9	Unmodified	_IVLLIVTRI_					0	0	0		ENSG00000124564|ENST00000397060|SLC17A3	ENSG00000124564|ENST00000397060|SLC17A3	ENSG00000124564|ENST00000397060|SLC17A3	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.3121948242188	2	520.365527	1038.7165	1.118	0.00058176	1.1687	0.00060813	2.2866	0.0011899	520.3675561690103	79.457	0.19443	79.457	79.352	79.546	0					7	4	2	0	0	0	0.027462	1	8116	8116		20.482	4.84	1	795200			21364	3658	17444	17467	23736	23736					0.1986923320155256
IVLLLLLLLH	10	Unmodified	_IVLLLLLLLH_					0	0	0			REV__ENSG00000103522|ENST00000337929|IL21R	REV__ENSG00000103522|ENST00000337929|IL21R	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.336181640625	2	580.412478	1158.8104	-1.5286	-0.00088723	-2.0786	-0.0012064	-3.6072	-0.0020937	580.4109150152669	104.51	0.21329	104.51	104.36	104.58	0					7	4	2	0	0	0	0.027508	1	11722	11722		7.6903	6.5948	1	96193	+		21365	17623	17445	17468	23737	23737					0.23734952303857426
IVLLQEIRDL	10	Unmodified	_IVLLQEIRDL_					0	0	0		tr|A0A7D6VXM7|A0A7D6VXM7_9CLOTLarge-conductancemechanosensitivechannelOS=ClostridiumintestinaleOX=36845GN=mscLPE=3SV=1	tr|A0A7D6VXM7|A0A7D6VXM7_9CLOTLarge-conductancemechanosensitivechannelOS=ClostridiumintestinaleOX=36845GN=mscLPE=3SV=1	tr|A0A7D6VXM7|A0A7D6VXM7_9CLOTLarge-conductancemechanosensitivechannelOS=ClostridiumintestinaleOX=36845GN=mscLPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3701782226562	2	606.371538	1210.72852	-0.26856	-0.00016285	-2.8049	-0.0017008	-3.0734	-0.0018636	606.369699493104	145.24	3.8933	143.8	141.64	145.53	-1.4357					226	74	4	0	0	0	0.72319	1	14316	14316		27.882	2.3082	1	336140			21366	35291	17446	17469	23738	23738					0.13158805154080255
IVLLRVIPK	9	Unmodified	_IVLLRVIPK_					0	0	0		ENST00000299824.5_1_20:37547833-37547944:+|nuORF	ENST00000299824.5_1_20:37547833-37547944:+|nuORF	ENST00000299824.5_1_20:37547833-37547944:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.8563842773438	2	525.87352	1049.73249	1.3337	0.00070136	3.2714	0.0017204	4.6051	0.0024217	525.8742296027009	127.07	0.18069	127.07	126.96	127.14	0					5	3	2	0	0	0	0.027462	1	14705	14705		19.36	6.4008	1	24429			21367	10165	17447	17470	23739	23739					0.20960939438441528
IVLMRPARS	9	Unmodified	_IVLMRPARS_					0	0	0			REV__GPBP1|p.N435Mfs*3|1|0.33|ENSG00000062194|chr5:57262630-57262630|A/-|frameshift_variant	REV__GPBP1|p.N435Mfs*3|1|0.33|ENSG00000062194|chr5:57262630-57262630|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	521.8114013671875	2	521.813136	1041.61172	-0.83564	-0.00043605	0.38634	0.0002016	-0.4493	-0.00023445	521.8134554363941	67.923	3.082	65.262	64.842	67.924	-2.661					124	61	3	0	0	0	0.65371	1	5313	5313		25.574	2.5316	1	4500900	+		21368	16750	17448	17471	23740	23740					0.0925778845332843
IVLNPLMIV	9	Unmodified	_IVLNPLMIV_					0	0	0		tr|A0A553SSG8|A0A553SSG8_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=celBPE=4SV=1	tr|A0A553SSG8|A0A553SSG8_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=celBPE=4SV=1	tr|A0A553SSG8|A0A553SSG8_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=celBPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	506.3188781738281	2	506.317189	1010.61982	-0.7007	-0.00035478	4.0833	0.0020675	3.3826	0.0017127	506.31921288144724	59.031	1.6985	56.251	55.74	57.438	-2.7801					106	32	5	0	0	0	0.073432	1	4275	4275		105.27	21.982	1	1253400			21369	34374	17449	17472	23741	23741					0.1149392265010647
IVLPRSIVF	9	Unmodified	_IVLPRSIVF_					0	0	0			REV__ENSG00000169340|ENST00000302451|PDILT	REV__ENSG00000169340|ENST00000302451|PDILT	MULTI-MSMS	OvCa99_classI_Rep5	1	522.33740234375	2	522.334227	1042.6539	0.89874	0.00046944	1.353	0.00070671	2.2517	0.0011762	522.3348099847174	138.63	1.0126	138.63	138.26	139.27	0					47	20	3	0	0	0	0.46377	1	16206	16206		45.952	11.779	1	402470	+		21370	21455	17450	17473	23742	23742					0.13428087133388544
IVLSEDKQEVV	11	Unmodified	_IVLSEDKQEVV_					0	0	0		ENST00000569936.5_1_15:74476032-74483282:-|nuORF;ENST00000574439.5_1_15:74472423-74490170:-|nuORF;nc|ENSG00000137868|Q9BX79-3|STRA6;ENSG00000137868|ENST00000395105|STRA6;nc|ENSG00000137868|Q9BX79-6|STRA6;nc|ENSG00000137868|Q9BX79-5|STRA6;nc|ENSG00000137868|Q9BX79-4|STRA6;chr15:74202282-74202418|368|12.76|0.4|5.01|-|ENST00000563965|STRA6,STRA6	ENST00000569936.5_1_15:74476032-74483282:-|nuORF	ENST00000569936.5_1_15:74476032-74483282:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	629.8500366210938	2	629.848093	1257.68163	1.503	0.00094665	0.27269	0.00017175	1.7757	0.0011184	629.8481023832251	79.181	0.48119	79.181	78.955	79.436	0					25	11	3	0	0	0	0.69589	1	8066	8066		21.686	7.5486	1	1231900			21371	362	17451	17474	23743	23743					0.06309900812266278
IVLSHIARI	9	Unmodified	_IVLSHIARI_					0	0	0		tr|A0A553SS35|A0A553SS35_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_02395PE=4SV=1	tr|A0A553SS35|A0A553SS35_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_02395PE=4SV=1	tr|A0A553SS35|A0A553SS35_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_02395PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	511.3273010253906	2	511.329476	1020.6444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	158.44	1	158.44	157.94	158.94	0								0	0	0	0.18141	1	18569	18569		32.812	2.9709	1				21372	34328	17452	17475	23744	23744					0.13490318847846083
IVLSHIARI	9	Unmodified	_IVLSHIARI_					0	0	0		tr|A0A553SS35|A0A553SS35_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_02395PE=4SV=1	tr|A0A553SS35|A0A553SS35_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_02395PE=4SV=1	tr|A0A553SS35|A0A553SS35_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_02395PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	511.328369140625	2	511.329476	1020.6444	NaN	NaN	NaN	NaN	NaN	NaN	NaN	158.6	1	158.6	158.1	159.1	0								0	0	0	0.17936	1	18588	18588		35.618	6.4687	1				21373	34328	17452	17475	23745	23745					0.13490318847846083
IVLSHIARI	9	Unmodified	_IVLSHIARI_					0	0	0		tr|A0A553SS35|A0A553SS35_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_02395PE=4SV=1	tr|A0A553SS35|A0A553SS35_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_02395PE=4SV=1	tr|A0A553SS35|A0A553SS35_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_02395PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	511.3270263671875	2	511.329476	1020.6444	-3.9215	-0.0020052	-0.26328	-0.00013462	-4.1848	-0.0021398	511.32921715256015	153.82	1.2958	153.59	153.28	154.58	-0.22696					76	27	4	0	0	0	0.59983	1	15671	15671		31.955	1.4512	1	348680			21374	34328	17452	17475	23746	23746					0.13490318847846083
IVLSHIARI	9	Unmodified	_IVLSHIARI_					0	0	0		tr|A0A553SS35|A0A553SS35_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_02395PE=4SV=1	tr|A0A553SS35|A0A553SS35_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_02395PE=4SV=1	tr|A0A553SS35|A0A553SS35_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_02395PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.32763671875	2	511.329476	1020.6444	-4.4323	-0.0022664	-0.073534	-3.76E-05	-4.5058	-0.002304	511.3293417529648	154.42	1.6613	152.97	152.67	154.33	-1.4516					104	42	5	0	0	0	0.62352	1	15321	15321		29.15	3.6994	1	1662600			21375	34328	17452	17475	23747	23747					0.13490318847846083
IVLSKLNPE	9	Unmodified	_IVLSKLNPE_					0	0	0		ENSG00000034971|ENST00000037502|MYOC	ENSG00000034971|ENST00000037502|MYOC	ENSG00000034971|ENST00000037502|MYOC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.267333984375	2	506.8055	1011.59645	-1.4316	-0.00072556	0.0082118	4.1618E-06	-1.4234	-0.00072139	506.805325503996	87.418	1.1543	84.791	84.349	85.503	-2.6269					40	22	2	0	0	0	0.027448	1	7494	7494		44.117	13.613	1	156590			21376	1080	17453	17476	23748	23748					0.0911120013714708
IVLSVPHEL	9	Unmodified	_IVLSVPHEL_					0	0	0			REV__ENST00000249883.9_1_3:134075497-134075785:-|nuORF	REV__ENST00000249883.9_1_3:134075497-134075785:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	503.801513671875	2	503.800217	1005.58588	1.9668	0.00099089	0.41558	0.00020937	2.3824	0.0012003	503.80022479391795	92.923	1.5406	92.923	92.008	93.549	0					70	36	4	0	0	0	0.19716	1	10082	10082		76.847	8.3619	1	3215500	+		21377	23857	17454	17477	23749	23749					0.08331217482702868
IVLVFFWVG	9	Unmodified	_IVLVFFWVG_					0	0	0			REV__L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|308|3|anti-sense	REV__L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|308|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.2876586914062	2	540.318046	1078.62154	1.2236	0.00066114	-2.6326	-0.0014224	-1.409	-0.00076129	540.3167053765707	145.16	1.2391	145.16	144.89	146.13	0					38	25	3	0	0	0	0.027462	1	17072	17072		29.842	0	1	971620	+		21378	28512	17455	17478	23750	23750					0.08537299730369341
IVLVHSSDLSH	11	Unmodified	_IVLVHSSDLSH_					0	0	0		ENST00000526084.1_1_11:7690232-7690520:-|nuORF	ENST00000526084.1_1_11:7690232-7690520:-|nuORF	ENST00000526084.1_1_11:7690232-7690520:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	603.3275146484375	2	603.827495	1205.64044	0.49953	0.00030163	-0.066506	-4.0158E-05	0.43303	0.00026147	603.8275041741609	76.315	1.7211	73.376	72.741	74.462	-2.9389					85	35	5	0	0	0	0.025908	1	6028	6028		31.53	16.665	1	209640			21379	13210	17456	17479	23751	23751					0.04584184563486815
IVLVNKALLTT	11	Unmodified	_IVLVNKALLTT_					0	0	0		ENST00000482643.1_1_9:99136327-99145916:-|nuORF;nc|ENSG00000130958|Q76EJ3-2|SLC35D2;ENSG00000130958|ENST00000253270|SLC35D2	ENST00000482643.1_1_9:99136327-99145916:-|nuORF	ENST00000482643.1_1_9:99136327-99145916:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	592.8240966796875	2	592.884281	1183.75401	-0.6645	-0.00039397	-1.1114	-0.00065894	-1.7759	-0.0010529	592.8832685194757	95.321	0.14861	94.293	94.219	94.367	-1.0281					4	2	2	0	0	0	0.025746	1	8565	8565		32.812	3.6424	1	7015.4			21380	4030	17457	17480	23752	23752					0.1694827967648962
IVLVRSPAI	9	Unmodified	_IVLVRSPAI_					0	0	0			REV__ENSG00000137414|ENST00000259963|FAM8A1	REV__ENSG00000137414|ENST00000259963|FAM8A1	MULTI-MSMS	OvCa9_classI_Rep2	2	484.318359375	2	484.318577	966.622602	-0.15674	-7.5911E-05	0.29268	0.00014175	0.13594	6.584E-05	484.3185907532153	114.55	1.2339	114.43	114.16	115.39	-0.11777					49	24	3	0	0	0	0.65476	1	10897	10897		25.45	0.94616	1	168710	+		21381	19450	17458	17481	23753	23753					0.13795514099274442
IVLYAMSSV	9	Oxidation (M)	_IVLYAM(Oxidation (M))SSV_		IVLYAM(1)SSV		IVLYAM(66)SSV	0	0	1		tr|A0A553SGD7|A0A553SGD7_NIACIFlagellarmotorproteinMotBOS=NialliacirculansOX=1397GN=motBPE=3SV=1	tr|A0A553SGD7|A0A553SGD7_NIACIFlagellarmotorproteinMotBOS=NialliacirculansOX=1397GN=motBPE=3SV=1	tr|A0A553SGD7|A0A553SGD7_NIACIFlagellarmotorproteinMotBOS=NialliacirculansOX=1397GN=motBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	499.76434326171875	2	499.764986	997.515419	0.42626	0.00021303	-0.30435	-0.00015211	0.1219	6.0922E-05	499.76512722989173	126.31	4.05	126.07	125.5	129.55	-0.2359					192	81	3	0	0	0	0.27546	1	12339	12339		65.803	7.9919	1	11682000			21382	33146	17459	17482	23754	23754		729			0.016561761027446664
IVLYNDVY	8	Unmodified	_IVLYNDVY_					0	0	0		tr|A0A553SS97|A0A553SS97_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02650PE=3SV=1	tr|A0A553SS97|A0A553SS97_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02650PE=3SV=1	tr|A0A553SS97|A0A553SS97_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02650PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	499.7646789550781	2	499.7633	997.512048	0.8461	0.00042285	2.5175	0.0012581	3.3636	0.001681	499.7649286167221	127.27	5.5139	126.2	124.35	129.86	-1.0715					229	108	5	0	0	0	0.62934	1	10000	10000		57.811	3.035	1	11725000			21383	34347	17460	17483	23755	23755					0.01319249320374638
IVLYNDVY	8	Unmodified	_IVLYNDVY_					0	0	0		tr|A0A553SS97|A0A553SS97_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02650PE=3SV=1	tr|A0A553SS97|A0A553SS97_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02650PE=3SV=1	tr|A0A553SS97|A0A553SS97_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02650PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.76483154296875	2	499.7633	997.512048	-1.053	-0.00052626	4.0977	0.0020479	3.0447	0.0015216	499.76572667649543	127.6	4.5409	126.16	125.39	129.93	-1.4357					197	90	5	0	0	0	0.57878	2	12262	12250;12262		68.485	8.1907	1	12586000			21384	34347	17460	17483	23756;23757	23757					0.01319249320374638
IVMALIGALFI	11	Unmodified	_IVMALIGALFI_					0	0	0		tr|A0A7D6VRL8|A0A7D6VRL8_9CLOTStageVsporulationproteinBOS=ClostridiumintestinaleOX=36845GN=spoVBPE=4SV=1	tr|A0A7D6VRL8|A0A7D6VRL8_9CLOTStageVsporulationproteinBOS=ClostridiumintestinaleOX=36845GN=spoVBPE=4SV=1	tr|A0A7D6VRL8|A0A7D6VRL8_9CLOTStageVsporulationproteinBOS=ClostridiumintestinaleOX=36845GN=spoVBPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	580.8587036132812	2	580.859221	1159.70389	0.58654	0.0003407	-1.4819	-0.00086077	-0.89535	-0.00052007	580.8581786013297	153.9	2.0826	153.9	153.5	155.58	0					118	41	4	0	0	0	0.54124	1	18065	18065		50.025	4.0523	1	597830			21385	34940	17461	17484	23758	23758					0.13042453746993488
IVMAQKLKGT	10	Unmodified	_IVMAQKLKGT_					0	0	0		nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;ENST00000589223.5_1_19:2102174-2111012:-|nuORF;ENST00000585652.5_1_19:2109741-2111012:-|nuORF	nc|ENSG00000065000|O14617-4|AP3D1	nc|ENSG00000065000|O14617-4|AP3D1	MULTI-MSMS	OvCa9_classI_Rep3	3	544.8246459960938	2	544.828452	1087.64235	-5.7876	-0.0031532	-1.5586	-0.00084917	-7.3462	-0.0040024	544.8275981477423	155.03	0.91966	153.96	153.65	154.57	-1.073					57	22	4	0	0	0	0.7759	1	13340	13340		21.96	0.25755	1	91973			21386	1312	17462	17485	23759	23759					0.10203522047731894
IVMIGLPAR	9	Unmodified	_IVMIGLPAR_					0	0	0		nc|ENSG00000123836|O60825-2|PFKFB2;ENSG00000123836|ENST00000367080|PFKFB2;PFKFB2|p.P361Lfs*53|1|0.06|ENSG00000123836|chr1:207069516-207069516|T/-|frameshift_variant	nc|ENSG00000123836|O60825-2|PFKFB2	nc|ENSG00000123836|O60825-2|PFKFB2	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.7688903808594	2	485.29933	968.584108	-1.3196	-0.00064041	-4.1406	-0.0020094	-5.4602	-0.0026498	485.29663918690454	63.927	0.4382	63.927	63.732	64.17	0					14	10	2	0	0	0	0.027462	1	5795	5795		18.324	0	1	210590			21387	3614	17463	17486	23760	23760					0.09855885193098857
IVMLEVILK	9	Unmodified	_IVMLEVILK_					0	0	0		ENSG00000104321|ENST00000262209|TRPA1	ENSG00000104321|ENST00000262209|TRPA1	ENSG00000104321|ENST00000262209|TRPA1	MULTI-MSMS	OvCa9_classI_Rep2	2	529.3338623046875	2	529.338121	1056.66169	-1.2215	-0.00064657	-4.0962	-0.0021683	-5.3177	-0.0028149	529.3357853309486	57.37	1.1974	54.578	54.328	55.525	-2.792					51	23	4	0	0	0	0.40667	1	4104	4104		51.335	1.7994	1	155790			21388	2365	17464	17487	23761	23761					0.13562478338621986
IVMNCLLLT	9	Oxidation (M)	_IVM(Oxidation (M))NCLLLT_		IVM(1)NCLLLT		IVM(69)NCLLLT	0	0	1			REV__ENSG00000277481|ENST00000620267|PKD1L3	REV__ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MSMS	OvCa9_classI_Rep2	2	518.2816772460938	2	518.282489	1034.55042	0.26729	0.00013853	-0.36262	-0.00018794	-0.095321	-4.9403E-05	518.2822567889135	66.733	2.873	64.037	63.567	66.44	-2.6958					124	57	4	0	0	0	0.24951	1	5170	5170		68.787	7.8149	1	1284900	+		21389	23634	17465	17488	23762	23762		551			0.03453095639042658
IVMNVSPPFI	10	Oxidation (M)	_IVM(Oxidation (M))NVSPPFI_		IVM(1)NVSPPFI		IVM(85)NVSPPFI	0	0	1			REV__PHLPP1|p.Q1514Hfs*26|1|0.18|ENSG00000081913|chr18:62978815-62978816|-/ACAT|frameshift_variant	REV__PHLPP1|p.Q1514Hfs*26|1|0.18|ENSG00000081913|chr18:62978815-62978816|-/ACAT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.8062744140625	2	566.807185	1131.59982	0.42274	0.00023961	-3.4375	-0.0019484	-3.0147	-0.0017088	566.8051055015428	103.17	3.0728	100.97	100.04	103.12	-2.1994					161	58	4	0	0	0	0.26627	1	9336	9336		84.916	18.486	1	392830	+		21390	17078	17466	17489	23763	23763		402			0.03928126919481656
IVMRRDQVL	9	Oxidation (M)	_IVM(Oxidation (M))RRDQVL_		IVM(1)RRDQVL		IVM(57)RRDQVL	0	0	1		nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENSG00000153201|ENST00000283195|RANBP2;ENSG00000196862|ENST00000408999|RGPD4	nc|ENSG00000187627|P0DJD0|RGPD1	nc|ENSG00000187627|P0DJD0|RGPD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	573.3240966796875	2	573.326608	1144.63866	0.088431	5.07E-05	-4.2545	-0.0024392	-4.1661	-0.0023885	573.3237997741434	111.56	0.68458	110.05	109.79	110.47	-1.5111					28	12	3	0	0	0	0.35444	1	10301	10301		56.721	9.0637	1	132030			21391	1004	17467	17490	23764	23764		32			0.07212852273846693
IVMRRDQVL	9	Oxidation (M)	_IVM(Oxidation (M))RRDQVL_					0	0	1		nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENSG00000153201|ENST00000283195|RANBP2;ENSG00000196862|ENST00000408999|RGPD4	nc|ENSG00000187627|P0DJD0|RGPD1	nc|ENSG00000187627|P0DJD0|RGPD1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	573.326608	1144.63866	1.1188	0.00064145	-4.518	-0.0025903	-3.3992	-0.0019488	573.3240642005462	109.77	0.93724	109.77	109.15	110.09	0	-0.16734	8.9439E-05	NaN	56.721	42	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	599950			21392	1004	17467	17490				32			0.07212852273846693
IVMRRDQVL	9	Oxidation (M)	_IVM(Oxidation (M))RRDQVL_					0	0	1		nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENSG00000153201|ENST00000283195|RANBP2;ENSG00000196862|ENST00000408999|RGPD4	nc|ENSG00000187627|P0DJD0|RGPD1	nc|ENSG00000187627|P0DJD0|RGPD1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	573.326608	1144.63866	0.48377	0.00027736	-4.8215	-0.0027643	-4.3377	-0.0024869	573.3235001192126	111.1	0.69835	110	109.65	110.35	-1.1038	0.059043	-0.00025863	NaN	56.721	39	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115200			21393	1004	17467	17490				32			0.07212852273846693
IVMRYSAEWKV	11	Unmodified	_IVMRYSAEWKV_					0	0	0		ENST00000490438.1_1_9:95050027-95055918:-|nuORF	ENST00000490438.1_1_9:95050027-95055918:-|nuORF	ENST00000490438.1_1_9:95050027-95055918:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	460.2593994140625	3	461.248074	1380.72239	-0.0097523	-4.4982E-06	0.030336	1.3992E-05	0.020584	9.4942E-06	461.5829991140133	56.831	0.51466	56.831	56.623	57.138	0					16	11	2	0	0	0	0.025819	1	4774	4774		32.034	8.6562	1	113360			21394	12694	17468	17491	23765	23765					0.04725963650889753
IVNAKFGLV	9	Unmodified	_IVNAKFGLV_					0	0	0			REV__nc|ENSG00000072041|Q9H2J7-3|SLC6A15	REV__nc|ENSG00000072041|Q9H2J7-3|SLC6A15	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.79803466796875	2	480.797478	959.580402	-0.10363	-4.9827E-05	-0.62992	-0.00030286	-0.73355	-0.00035269	480.79694462562895	116.33	2.3302	114.97	114.65	116.98	-1.3645					106	44	4	0	0	0	0.42057	1	10844	10844		50.025	7.5501	1	303270	+		21395	16908	17469	17492	23766	23766					0.0989953869089959
IVNEEGQLN	9	Unmodified	_IVNEEGQLN_					0	0	0			REV__tr|A0A553SGK9|A0A553SGK9_NIACI23SrRNA(Uracil(1939)-C(5))-methyltransferaseRlmDOS=NialliacirculansOX=1397GN=rlmDPE=3SV=1	REV__tr|A0A553SGK9|A0A553SGK9_NIACI23SrRNA(Uracil(1939)-C(5))-methyltransferaseRlmDOS=NialliacirculansOX=1397GN=rlmDPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.7770690917969	2	508.256371	1014.49819	0.25543	0.00012982	-0.24696	-0.00012552	0.008469	4.3044E-06	508.7564008229215	84.273	0.70836	81.61	81.022	81.73	-2.6629					17	14	2	0	0	0	0.027453	1	6970	6970		37.812	0	1	59524	+		21396	29715	17470	17493	23767	23767					-0.008480281787228705
IVNGDDPL	8	Unmodified	_IVNGDDPL_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MSMS	OvCa99_classI_Rep5	1	421.7171630859375	2	421.71635	841.418148	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.321	1	32.321	31.821	32.821	0								0	0	0	0.30129	1	1400	1400		26.796	1.3459	1				21397	7923	17471	17494	23768	23768					-0.008904697819161811
IVNGHTLLV	9	Unmodified	_IVNGHTLLV_					0	0	0		nc|ENSG00000109911|Q96EB1-2|ELP4;ENSG00000109911|ENST00000640961|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4	nc|ENSG00000109911|Q96EB1-2|ELP4	nc|ENSG00000109911|Q96EB1-2|ELP4	MULTI-MSMS	OvCa99_classI_Rep5	1	483.29254150390625	2	483.292559	964.570566	2.2507	0.0010878	-0.11806	-5.7056E-05	2.1327	0.0010307	483.29237278560333	82.497	0.68452	82.497	82.222	82.906	0					32	15	3	0	0	0	0.13482	1	8551	8551		87.754	8.3033	1	1464100			21398	14953	17472	17495	23769	23769					0.08686350685525213
IVNGHTLLV	9	Unmodified	_IVNGHTLLV_					0	0	0		nc|ENSG00000109911|Q96EB1-2|ELP4;ENSG00000109911|ENST00000640961|ELP4;nc|ENSG00000109911|Q96EB1-3|ELP4	nc|ENSG00000109911|Q96EB1-2|ELP4	nc|ENSG00000109911|Q96EB1-2|ELP4	MULTI-MSMS	OvCa9_classI_Rep4_	4	483.2943420410156	2	483.292559	964.570566	1.24	0.0005993	-1.5774	-0.00076233	-0.33734	-0.00016303	483.291612296653	85.793	1.1375	83.147	82.848	83.986	-2.6463					49	22	3	0	0	0	0.13482	1	7232	7232		87.754	21.951	1	412690			21399	14953	17472	17495	23770	23770					0.08686350685525213
IVNGTEEEYQ	10	Unmodified	_IVNGTEEEYQ_					0	0	0			REV__tr|A0A7D6VRQ3|A0A7D6VRQ3_9CLOTL-ribulose-5-phosphate4-epimeraseOS=ClostridiumintestinaleOX=36845GN=araDPE=3SV=1	REV__tr|A0A7D6VRQ3|A0A7D6VRQ3_9CLOTL-ribulose-5-phosphate4-epimeraseOS=ClostridiumintestinaleOX=36845GN=araDPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	591.37255859375	2	591.269675	1180.5248	-0.42962	-0.00025402	-2.1461	-0.0012689	-2.5757	-0.0015229	591.2689823135364	72.97	0.30968	70.57	70.378	70.687	-2.3999					7	5	2	0	0	0	0.026602	1	5905	5905		65.465	39.891	1	7983.9	+		21400	31434	17473	17496	23771	23771					-0.05824384078027833
IVNKIRLRS	9	Unmodified	_IVNKIRLRS_					0	0	0			REV__ENST00000202816.5_1_20:13763760-13765473:-|nuORF	REV__ENST00000202816.5_1_20:13763760-13765473:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.2862548828125	2	549.858932	1097.70331	1.7836	0.00098075	4.0717	0.0022389	5.8554	0.0032196	549.8609906286623	120.24	0.5572	120.24	119.92	120.47	0					25	13	2	0	0	0	0.027462	1	13799	13799		16.473	3.6614	1	738150	+		21401	23697	17474	17497	23772	23772					0.1583679514214964
IVNLGRGAFEA	11	Unmodified	_IVNLGRGAFEA_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-MSMS	OvCa9_classI_Rep2	2	573.8168334960938	2	573.81693	1145.61931	-1.3063	-0.00074959	1.1287	0.00064767	-0.17763	-0.00010193	573.8174474200665	59.625	2.0984	56.845	56.241	58.34	-2.7801					98	39	4	0	0	0	0.65063	1	4368	4368		40.058	2.8991	1	469370			21402	3959	17475	17498	23773	23773					0.05232219254617121
IVNNAFKHS	9	Unmodified	_IVNNAFKHS_					0	0	0		ENSG00000162390|ENST00000343744|ACOT11;nc|ENSG00000162390|Q8WXI4|ACOT11	ENSG00000162390|ENST00000343744|ACOT11	ENSG00000162390|ENST00000343744|ACOT11	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.2782592773438	2	515.277441	1028.54033	-0.46088	-0.00023748	1.6575	0.00085407	1.1966	0.00061659	515.2782265862743	65.35	1.7444	61.865	60.921	62.665	-3.4854					61	35	2	0	0	0	0.33652	1	4697	4697		58.782	5.4305	1	559370			21403	6175	17476	17499	23774	23774					0.027199920203202055
IVNNAFKHS	9	Unmodified	_IVNNAFKHS_					0	0	0		ENSG00000162390|ENST00000343744|ACOT11;nc|ENSG00000162390|Q8WXI4|ACOT11	ENSG00000162390|ENST00000343744|ACOT11	ENSG00000162390|ENST00000343744|ACOT11	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.277441	1028.54033	0.044271	2.2812E-05	1.3681	0.00070496	1.4124	0.00072777	515.2780272199969	64.681	1.723	61.957	60.968	62.691	-2.7245	0.046039	-7.6764E-05	NaN	58.782	55	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118230			21404	6175	17476	17499							0.027199920203202055
IVNQLNALSSL	11	Unmodified	_IVNQLNALSSL_					0	0	0		nc|ENSG00000115504|Q8NDI1|EHBP1	nc|ENSG00000115504|Q8NDI1|EHBP1	nc|ENSG00000115504|Q8NDI1|EHBP1	MULTI-MSMS	OvCa9_classI_Rep2	2	586.3370971679688	2	586.337695	1170.66084	-1.7478	-0.0010248	1.6389	0.00096097	-0.10885	-6.3821E-05	586.3385315943224	119.53	1.971	119.36	119.01	120.98	-0.17137					102	39	4	0	0	0	0.28332	1	11489	11489		69.628	6.2012	1	240960			21405	14976	17477	17500	23775	23775					0.08233355223296712
IVNQLNALSSL	11	Unmodified	_IVNQLNALSSL_					0	0	0		nc|ENSG00000115504|Q8NDI1|EHBP1	nc|ENSG00000115504|Q8NDI1|EHBP1	nc|ENSG00000115504|Q8NDI1|EHBP1	MULTI-MSMS	OvCa9_classI_Rep3	3	586.3375854492188	2	586.337695	1170.66084	-0.23945	-0.0001404	0.014787	8.6699E-06	-0.22466	-0.00013173	586.3375461958808	120.51	2.3583	119.48	119.07	121.43	-1.0271					97	45	4	0	0	0	0.13051	1	9193	9193		90.601	11.531	1	289410			21406	14976	17477	17500	23776	23776					0.08233355223296712
IVNSIFAVI	9	Unmodified	_IVNSIFAVI_					0	0	0			REV__tr|A0A553SSC4|A0A553SSC4_NIACIPTSsugartransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_02860PE=4SV=1	REV__tr|A0A553SSC4|A0A553SSC4_NIACIPTSsugartransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_02860PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.29888916015625	2	488.29731	974.580068	-1.012	-0.00049416	1.0324	0.00050413	0.020404	9.963E-06	488.29763994024694	124.62	1.6404	123.23	122.82	124.46	-1.3908					82	31	4	0	0	0	0.62352	1	11872	11872		29.15	0	1	255520	+		21407	30820	17478	17501	23777	23777					0.0917611897103825
IVNSITIKI	9	Unmodified	_IVNSITIKI_					0	0	0		ENSG00000065060|ENST00000192788|BLTP3A	ENSG00000065060|ENST00000192788|BLTP3A	ENSG00000065060|ENST00000192788|BLTP3A	MULTI-SECPEP	OvCa9_classI_Rep3	3	501.3019104003906	2	500.823692	999.632832	-0.0087925	-4.4035E-06	-1.3578	-0.00068001	-1.3666	-0.00068441	500.82298229953636	103.98	1.981	102.55	102.08	104.06	-1.4347					73	36	4	0	0	0	0.02704	1	7219	7219		101.25	5.4375	1	269650			21408	1314	17479	17502	23778	23778					0.13300077033841262
IVNTANPGIK	10	Unmodified	_IVNTANPGIK_					0	0	0		ENSG00000152763|ENST00000371026|DNAI4;nc|ENSG00000152763|Q5VTH9-3|DNAI4	ENSG00000152763|ENST00000371026|DNAI4	ENSG00000152763|ENST00000371026|DNAI4	MULTI-MSMS	OvCa99_classI_Rep5	1	513.8002319335938	2	513.800749	1025.58694	0.25052	0.00012872	-1.0099	-0.0005189	-0.7594	-0.00039018	513.8001938561878	46.002	1.0093	46.002	45.71	46.719	0					71	22	5	0	0	0	0.44431	1	3233	3233		62.107	5.3864	1	10100000			21409	5640	17480	17503	23779	23779					0.07517431851601941
IVNTQDMELI	10	Unmodified	_IVNTQDMELI_					0	0	0			REV__ENSG00000134256|ENST00000682167|CD101	REV__ENSG00000134256|ENST00000682167|CD101	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.8207397460938	2	588.302464	1174.59037	1.8389	0.0010818	3.9306	0.0023124	5.7695	0.0033942	588.3055288225017	77.656	0.71842	77.656	77.293	78.011	0					27	16	3	0	0	0	0.026994	1	7888	7888		25.574	7.312	1	388290	+		21410	19189	17481	17504	23780	23780					0.01006313843299722
IVNTYVGPL	9	Unmodified	_IVNTYVGPL_					0	0	0			REV__nc|ENSG00000189099|Q7RTY5-3|PRSS48	REV__nc|ENSG00000189099|Q7RTY5-3|PRSS48	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.2789611816406	2	488.279118	974.543683	-2.1652	-0.0010572	1.8878	0.00092179	-0.2774	-0.00013545	488.27995204393716	125.95	1.1751	124.54	124.14	125.32	-1.4143					40	23	3	0	0	0	0.46377	1	11979	11979		45.952	1.8352	1	67827	+		21411	22761	17482	17505	23781	23781					0.055392420743373805
IVNVLQNIPP	10	Unmodified	_IVNVLQNIPP_					0	0	0		tr|A0A553SS34|A0A553SS34_NIACIDinBfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_02350PE=4SV=1	tr|A0A553SS34|A0A553SS34_NIACIDinBfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_02350PE=4SV=1	tr|A0A553SS34|A0A553SS34_NIACIDinBfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_02350PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8295288085938	2	553.832049	1105.64954	0.13277	7.3535E-05	-3.4573	-0.0019148	-3.3245	-0.0018412	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.71192	1	14195	14195		29.15	3.5755	1	400120			21412	34327	17483	17506	23782	23782					0.10094577919790026
IVNWSLKPLVA	11	Unmodified	_IVNWSLKPLVA_					0	0	0			REV__tr|A0A553SFB6|A0A553SFB6_NIACIAlpha-N-arabinofuranosidaseOS=NialliacirculansOX=1397GN=CEQ21_08540PE=3SV=1	REV__tr|A0A553SFB6|A0A553SFB6_NIACIAlpha-N-arabinofuranosidaseOS=NialliacirculansOX=1397GN=CEQ21_08540PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	413.9201354980469	3	413.920174	1238.73869	-0.24737	-0.00010239	-3.1897	-0.0013203	-3.4371	-0.0014227	413.91879694492843	70.178	0.6806	70.178	69.922	70.603	0					42	16	4	0	0	0	0.68399	1	6704	6704		31.068	6.7922	1	3940100	+		21413	29560	17484	17507	23783	23783					0.12887412879308613
IVNWSLKPLVA	11	Unmodified	_IVNWSLKPLVA_					0	0	0			REV__tr|A0A553SFB6|A0A553SFB6_NIACIAlpha-N-arabinofuranosidaseOS=NialliacirculansOX=1397GN=CEQ21_08540PE=3SV=1	REV__tr|A0A553SFB6|A0A553SFB6_NIACIAlpha-N-arabinofuranosidaseOS=NialliacirculansOX=1397GN=CEQ21_08540PE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	413.920174	1238.73869	-0.24737	-0.00010239	-3.1897	-0.0013203	-3.4371	-0.0014227	413.91879694492843	70.178	0.6806	70.178	69.922	70.603	0	0.10387	-0.00010727	NaN	31.068	42	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3940100	+		21414	29560	17484	17507							0.12887412879308613
IVNWSLKPLVA	11	Unmodified	_IVNWSLKPLVA_					0	0	0			REV__tr|A0A553SFB6|A0A553SFB6_NIACIAlpha-N-arabinofuranosidaseOS=NialliacirculansOX=1397GN=CEQ21_08540PE=3SV=1	REV__tr|A0A553SFB6|A0A553SFB6_NIACIAlpha-N-arabinofuranosidaseOS=NialliacirculansOX=1397GN=CEQ21_08540PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	413.920174	1238.73869	-0.64363	-0.00026641	-2.865	-0.0011859	-3.5086	-0.0014523	413.9188838827358	73.366	0.9161	69.97	69.688	70.604	-3.3961	-0.10387	0.00029599	NaN	31.068	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152800	+		21415	29560	17484	17507							0.12887412879308613
IVPAALKR	8	Unmodified	_IVPAALKR_					0	0	0			REV__nc|ENSG00000145495|O60337-6|MARCHF6	REV__nc|ENSG00000145495|O60337-6|MARCHF6	MULTI-MSMS	OvCa9_classI_Rep4_	4	434.2927551269531	2	434.292362	866.570172	0.63845	0.00027727	0.96231	0.00041792	1.6008	0.0006952	434.2919816887499	123.38	1.4847	122.02	121.31	122.79	-1.3666					75	29	4	0	0	0	0.75915	1	11668	11668		20.482	0	1	82753	+		21416	19965	17485	17508	23784	23784					0.13154975756322074
IVPANFAGADA	11	Unmodified	_IVPANFAGADA_					0	0	0			REV__ENSG00000005249|ENST00000265717|PRKAR2B	REV__ENSG00000005249|ENST00000265717|PRKAR2B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.28857421875	2	523.269281	1044.52401	-0.33351	-0.00017451	-3.7877	-0.001982	-4.1212	-0.0021565	523.2670542365599	96.458	0.56209	94.032	93.709	94.271	-2.4256					19	10	3	0	0	0	0.025315	1	8500	8500		23.523	0	1	14824	+		21417	16397	17486	17509	23785	23785					0.0035286606357658457
IVPDKFVSC	9	Unmodified	_IVPDKFVSC_					0	0	0			REV__nc|ENSG00000131653|Q6Q0C0-2|TRAF7	REV__nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MULTI-MSMS	OvCa99_classI_Rep5	1	504.26544189453125	2	504.265153	1006.51575	0.14951	7.5394E-05	3.1781	0.0016026	3.3276	0.001678	504.26676584805824	46.348	1.0516	46.348	45.979	47.03	0					62	23	4	0	0	0	0.31747	1	3260	3260		60.972	0	1	8907700	+		21418	19025	17487	17510	23786	23786					0.012755958225966424
IVPDYLLEI	9	Unmodified	_IVPDYLLEI_					0	0	0			REV__L1MB3_dup16926|chr22:15811040-15811839:+|1.0764931184738016|0.3095763404933719|1.8|423.0|26|3|sense	REV__L1MB3_dup16926|chr22:15811040-15811839:+|1.0764931184738016|0.3095763404933719|1.8|423.0|26|3|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.3225708007812	2	537.807708	1073.60086	-2.1231	-0.0011418	-0.93338	-0.00050198	-3.0564	-0.0016438	537.807038727613	119.99	1.0864	119.82	119.5	120.58	-0.17138					35	21	3	0	0	0	0.027462	1	11520	11520		24.203	5.8783	1	60524	+		21419	28416	17488	17511	23787	23787					0.06700664560025871
IVPDYLLEI	9	Unmodified	_IVPDYLLEI_					0	0	0			REV__L1MB3_dup16926|chr22:15811040-15811839:+|1.0764931184738016|0.3095763404933719|1.8|423.0|26|3|sense	REV__L1MB3_dup16926|chr22:15811040-15811839:+|1.0764931184738016|0.3095763404933719|1.8|423.0|26|3|sense	MULTI-MATCH	OvCa9_classI_Rep3	3		2	537.807708	1073.60086	2.319	0.0012472	-5.5948	-0.0030089	-3.2758	-0.0017617	537.8044765407666	120.91	0.87676	119.88	119.61	120.48	-1.0271	0.02449	-0.002721	NaN	37.159	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53540	+		21420	28416	17488	17511							0.06700664560025871
IVPDYLLEI	9	Unmodified	_IVPDYLLEI_					0	0	0			REV__L1MB3_dup16926|chr22:15811040-15811839:+|1.0764931184738016|0.3095763404933719|1.8|423.0|26|3|sense	REV__L1MB3_dup16926|chr22:15811040-15811839:+|1.0764931184738016|0.3095763404933719|1.8|423.0|26|3|sense	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	537.807708	1073.60086	-1.314	-0.0007067	-2.0236	-0.0010883	-3.3377	-0.001795	537.8064874455247	121.22	0.66241	119.87	119.64	120.31	-1.3479	0.015396	0.0011202	NaN	37.159	20	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33598	+		21421	28416	17488	17511							0.06700664560025871
IVPGEKINKTI	11	Unmodified	_IVPGEKINKTI_					0	0	0		tr|A0A553STI6|A0A553STI6_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_04950PE=3SV=1	tr|A0A553STI6|A0A553STI6_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_04950PE=3SV=1	tr|A0A553STI6|A0A553STI6_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_04950PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	606.36962890625	2	606.371538	1210.72852	-3.14	-0.001904	-0.05994	-3.6346E-05	-3.1999	-0.0019404	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.71498	1	15075	15075		24.519	0	1	257720			21422	34492	17489	17512	23788	23788					0.13158805154080255
IVPGNQRKKP	10	Unmodified	_IVPGNQRKKP_					0	0	0			REV__ENSG00000067798|ENST00000397909|NAV3	REV__ENSG00000067798|ENST00000397909|NAV3	MULTI-MSMS	OvCa9_classI_Rep2	2	568.8467407226562	2	568.848564	1135.68258	-0.94065	-0.00053509	-2.591	-0.0014739	-3.5317	-0.002009	568.8468987403617	122.03	1.7301	121.81	120.93	122.66	-0.21803					88	34	3	0	0	0	0.65434	1	11831	11831		35.618	4.0885	1	269790	+		21423	16840	17490	17513	23789	23789					0.12016204762517191
IVPIVPVVS	9	Unmodified	_IVPIVPVVS_					0	0	0			REV__chr2:110456835-110457030|157|13.86|0.3|5.55|-|0|TE_info:AluSq,AluSq_dup2285,Alu,SINE,acceptor,-,110456710,110456835|None,LIMS4|1	REV__chr2:110456835-110457030|157|13.86|0.3|5.55|-|0|TE_info:AluSq,AluSq_dup2285,Alu,SINE,acceptor,-,110456710,110456835|None,LIMS4|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.2636413574219	2	461.802229	921.589904	-2.6388	-0.0012186	-0.57849	-0.00026715	-3.2173	-0.0014858	461.8018196329637	49.735	0.62221	46.593	46.352	46.974	-3.1416					17	11	2	0	0	0	0.027462	1	2801	2801		26.796	7.4361	1	11600	+		21424	15990	17491	17514	23790	23790					0.12597306976431355
IVPLLEKLL	9	Unmodified	_IVPLLEKLL_					0	0	0			REV__nc|ENSG00000100084|P54198-2|HIRA	REV__nc|ENSG00000100084|P54198-2|HIRA	MULTI-MSMS	OvCa9_classI_Rep2	2	519.3517456054688	2	519.352086	1036.68962	0.30155	0.00015661	-0.55425	-0.00028785	-0.2527	-0.00013124	519.3516891643123	134.26	1.9111	134.04	133.66	135.57	-0.22696					104	38	4	0	0	0	0.44294	1	13312	13312		47.916	9.1095	1	404150	+		21425	17362	17492	17515	23791	23791					0.1727412459038078
IVPPPRDAIV	10	Unmodified	_IVPPPRDAIV_					0	0	0			REV__ROBO1|p.C1437Sfs*15|1|0.21|ENSG00000169855|chr3:78614773-78614774|-/TG|frameshift_variant	REV__ROBO1|p.C1437Sfs*15|1|0.21|ENSG00000169855|chr3:78614773-78614774|-/TG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	538.8258666992188	2	538.826766	1075.63898	0.036954	1.9912E-05	-1.0034	-0.00054068	-0.96648	-0.00052077	538.8262542166998	91.851	2.953	90.615	90.272	93.225	-1.2355					156	56	5	0	0	0	0.45822	1	8170	8170		60.118	1.3363	1	2991400	+		21426	21489	17493	17516	23792	23792					0.1041859526535518
IVPVRWAR	8	Unmodified	_IVPVRWAR_					0	0	0			REV__ENST00000485732.5_1_9:139751390-139753468:+|nuORF	REV__ENST00000485732.5_1_9:139751390-139753468:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.83074951171875	2	498.808711	995.602869	-0.3178	-0.00015852	-0.68993	-0.00034414	-1.0077	-0.00050267	498.8080976008741	90.706	0.71986	88.131	87.904	88.624	-2.575					21	13	2	0	0	0	0.028476	1	7837	7837		26.796	0	1	20168	+		21427	26567	17494	17517	23793	23793					0.10489182879166492
IVPVYKKAN	9	Unmodified	_IVPVYKKAN_					0	0	0			REV__tr|A0A553SQM4|A0A553SQM4_NIACITypeVIIsecretionproteinEssBOS=NialliacirculansOX=1397GN=CEQ21_07935PE=4SV=1	REV__tr|A0A553SQM4|A0A553SQM4_NIACITypeVIIsecretionproteinEssBOS=NialliacirculansOX=1397GN=CEQ21_07935PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.3176879882812	2	516.316035	1030.61752	2.691	0.0013894	-0.65228	-0.00033678	2.0387	0.0010526	516.3155984833777	102.36	0.93449	102.36	102.08	103.01	0					70	21	5	0	0	0	0.22961	1	11422	11422		71.296	3.802	1	12684000	+		21428	30645	17495	17518	23794	23794					0.10343210236646883
IVPYKSYE	8	Unmodified	_IVPYKSYE_					0	0	0			REV__ENST00000486698.1_1_7:91948745-91949191:+|nuORF	REV__ENST00000486698.1_1_7:91948745-91949191:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	499.7661437988281	2	499.7633	997.512048	0.8461	0.00042285	2.5175	0.0012581	3.3636	0.001681	499.7649286167221	127.27	5.5139	126.2	124.35	129.86	-1.0715					229	108	5	0	0	0	0.7224	1	10085	10085		38.806	3.1879	1	11725000	+		21429	26587	17496	17519	23795	23795					0.013192493203860067
IVQAFPRDPE	10	Unmodified	_IVQAFPRDPE_					0	0	0		nc|ENSG00000162692|P19320-2|VCAM1	nc|ENSG00000162692|P19320-2|VCAM1	nc|ENSG00000162692|P19320-2|VCAM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.7898559570312	2	586.308938	1170.60332	1.9819	0.001162	1.5505	0.00090908	3.5324	0.0020711	586.3094805636126	95.329	0.50494	95.329	95.033	95.538	0					25	11	3	0	0	0	0.026931	1	10406	10406		30.318	0	1	380990			21430	15133	17497	17520	23796	23796					0.024845130177027386
IVQCFGTFITN	11	Unmodified	_IVQCFGTFITN_					0	0	0		ENST00000468058.1_1_19:7975099-7977313:+|nuORF;ENSG00000076984|ENST00000397979|MAP2K7;nc|ENSG00000076984|O14733-4|MAP2K7;nc|ENSG00000076984|O14733-3|MAP2K7;nc|ENSG00000076984|O14733-2|MAP2K7	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	621.3323364257812	2	621.812999	1241.61144	2.1453	0.001334	-2.8954	-0.0018004	-0.75014	-0.00046645	621.8111556391776	115.78	1.6594	115.78	115.02	116.68	0					64	35	2	0	0	0	0.025344	1	13201	13201		33.922	0	1	388850			21431	1562	17498	17521	23797	23797					0.00030323942814902693
IVQHTLSQ	8	Unmodified	_IVQHTLSQ_					0	0	0			REV__ENST00000517417.2_1_5:140891530-140891647:+|nuORF	REV__ENST00000517417.2_1_5:140891530-140891647:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.77996826171875	2	463.258717	924.50288	-1.2773	-0.00059173	-1.9055	-0.00088275	-3.1828	-0.0014745	463.25871794252913	41.102	0.57369	38.147	37.893	38.466	-2.9541					17	10	2	0	0	0	0.028476	1	1816	1816		31.53	9.8275	1	11636	+		21432	27009	17499	17522	23798	23798					0.03760900754718932
IVQHTLSQ	8	Unmodified	_IVQHTLSQ_					0	0	0			REV__ENST00000517417.2_1_5:140891530-140891647:+|nuORF	REV__ENST00000517417.2_1_5:140891530-140891647:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	463.258717	924.50288	-0.53469	-0.0002477	0.53177	0.00024635	-0.0029228	-1.354E-06	463.258834917724	38.015	0.35433	38.015	37.806	38.161	0	-0.066271	0.00043232	NaN	31.53	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71679	+		21433	27009	17499	17522							0.03760900754718932
IVQIKTCHKM	10	Unmodified	_IVQIKTCHKM_					0	0	0			REV__ENSG00000101911|ENST00000380668|PRPS2	REV__ENSG00000101911|ENST00000380668|PRPS2	MULTI-MSMS	OvCa99_classI_Rep5	1	400.89434814453125	3	400.891233	1199.65187	1.0886	0.00043639	1.8689	0.00074922	2.9575	0.0011856	400.8917985503353	60.015	2.9335	60.015	58.892	61.826	0					192	72	4	0	0	0	0.63752	1	5299	5299		37.508	0	1	1511300	+		21434	17525	17500	17523	23799	23799					0.06002967061590425
IVQKQGLEIV	10	Unmodified	_IVQKQGLEIV_					0	0	0			REV__ENST00000551694.5_1_12:49318004-49319277:-|nuORF	REV__ENST00000551694.5_1_12:49318004-49319277:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.7575073242188	2	563.845156	1125.67576	1.0252	0.00057804	1.3471	0.00075957	2.3723	0.0013376	564.348105216522	103.34	0.50092	103.34	103.1	103.6	0					18	11	2	0	0	0	0.026994	1	11546	11546		32.812	0	1	161740	+		21435	27486	17501	17524	23800	23800					0.11794847091255178
IVRCPLVLLDS	11	Unmodified	_IVRCPLVLLDS_					0	0	0			REV__ENST00000409892.5_1_2:65315130-65315409:-|nuORF	REV__ENST00000409892.5_1_2:65315130-65315409:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	614.358642578125	2	614.360116	1226.70568	1.3073	0.00080317	-2.2235	-0.001366	-0.91619	-0.00056287	614.3587402192735	143.84	1.2844	143.84	143.22	144.5	0					64	25	5	0	0	0	0.65947	1	16852	16852		39.253	1.4413	1	1493800	+		21436	25485	17502	17525	23801	23801					0.10139462764959717
IVREVLPEA	9	Unmodified	_IVREVLPEA_					0	0	0		nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2	nc|ENSG00000130589|Q9BYK8-2|HELZ2	nc|ENSG00000130589|Q9BYK8-2|HELZ2	MULTI-MSMS	OvCa9_classI_Rep3	3	513.3031616210938	2	513.303124	1024.5917	0.34771	0.00017848	-0.97448	-0.0005002	-0.62677	-0.00032172	513.302615826109	103.47	2.7157	102.04	101.29	104.01	-1.4347					126	51	4	0	0	0	0.14998	1	7142	7142		84.916	10.66	1	1368900			21437	3995	17503	17526	23802	23802					0.0803831599437217
IVRGQTAESL	10	Unmodified	_IVRGQTAESL_					0	0	0		ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	ENSG00000165168|ENST00000378588|CYBB	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.3019409179688	2	537.301113	1072.58767	-0.85751	-0.00046074	-0.371	-0.00019934	-1.2285	-0.00066008	537.3008275332295	56.29	2.5822	52.995	52.567	55.149	-3.2944					126	50	4	0	0	0	0.048965	4	3585	3585;3596;3608;3623		129.42	44.506	1	1582700			21438	6530	17504	17527	23803;23804;23805;23806	23803					0.05428226500657729
IVRKLRSAE	9	Unmodified	_IVRKLRSAE_					0	0	0		ENST00000459912.5_1_10:5682668-5684508:-|nuORF	ENST00000459912.5_1_10:5682668-5684508:-|nuORF	ENST00000459912.5_1_10:5682668-5684508:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.294921875	2	536.33529	1070.65603	-1.9363	-0.0010385	1.7532	0.00094032	-0.18308	-9.8193E-05	536.3376007984995	72.039	0.24376	68.583	68.412	68.656	-3.4563					6	4	2	0	0	0	0.027462	1	5524	5524		37.159	6.6555	1	8030.1			21439	12142	17505	17528	23807	23807					0.12352515871157266
IVRKLVTAL	9	Unmodified	_IVRKLVTAL_					0	0	0		nc|ENSG00000176994|Q8TEV9-2|SMCR8;ENSG00000176994|ENST00000406438|SMCR8	nc|ENSG00000176994|Q8TEV9-2|SMCR8	nc|ENSG00000176994|Q8TEV9-2|SMCR8	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.81005859375	2	506.847502	1011.68045	1.402	0.00071062	-1.8729	-0.00094929	-0.4709	-0.00023867	506.84643032694584	88.64	0.39234	87.272	87.135	87.527	-1.3676					9	7	2	0	0	0	0.027418	1	7767	7767		79.451	18.479	1	9808.6			21440	7648	17506	17529	23808	23808					0.17507776024683608
IVRKPAGAKS	10	Unmodified	_IVRKPAGAKS_					0	0	0			REV__ENSG00000185950|ENST00000375856|IRS2	REV__ENSG00000185950|ENST00000375856|IRS2	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.30859375	2	513.824558	1025.63456	-0.26204	-0.00013464	-0.17441	-8.9616E-05	-0.43645	-0.00022426	513.824365829425	77.776	2.3029	75.424	74.89	77.193	-2.3527					143	45	6	0	0	0	0.026681	1	4028	4028		36.447	15.5	1	842930	+		21441	22547	17507	17530	23809	23809					0.12277130842448969
IVRLKGDLNKG	11	Unmodified	_IVRLKGDLNKG_					0	0	0			REV__TFB2M|p.R170Efs*9|1|0.15|ENSG00000162851|chr1:246557429-246557429|G/-|frameshift_variant	REV__TFB2M|p.R170Efs*9|1|0.15|ENSG00000162851|chr1:246557429-246557429|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	606.8174438476562	2	606.874779	1211.73501	1.376	0.00083504	1.5763	0.00095659	2.9522	0.0017916	606.8754324586336	97.272	1.4532	94.894	94.369	95.822	-2.3786					48	28	3	0	0	0	0.025487	1	8618	8618		46.457	0	1	42849	+		21442	20785	17508	17531	23810	23810					0.13760743105444817
IVRLQWEV	8	Unmodified	_IVRLQWEV_					0	0	0			REV__MCCC1-RAD51B|3|fusion	REV__MCCC1-RAD51B|3|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.28125	2	521.805834	1041.59712	-0.51438	-0.00026841	-4.368	-0.0022792	-4.8824	-0.0025476	521.8038208799383	52.949	0.6516	52.949	52.653	53.305	0					31	14	3	0	0	0	0.028476	1	4211	4211		12.959	0	1	807370	+		21443	28644	17509	17532	23811	23811					0.07798039576823612
IVRNYMEE	8	Unmodified	_IVRNYMEE_					0	0	0			REV__ENSG00000108387|ENST00000672673|SEPTIN4	REV__ENSG00000108387|ENST00000672673|SEPTIN4	MULTI-MSMS	OvCa99_classI_Rep5	1	527.257080078125	2	527.255317	1052.49608	1.516	0.00079934	1.1342	0.00059801	2.6502	0.0013974	527.255945355817	135.1	3.2133	135.1	134.61	137.82	0					154	68	4	0	0	0	0.62474	1	15773	15773		58.782	4.0596	1	1952100	+		21444	17884	17510	17533	23812	23812					-0.028067801881888954
IVRRKQRLNEL	11	Unmodified	_IVRRKQRLNEL_					0	0	0			REV__ENSG00000197594|ENST00000647893|ENPP1	REV__ENSG00000197594|ENST00000647893|ENPP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.6080017089844	3	475.631798	1423.87356	0.2224	0.00010578	3.11	0.0014792	3.3324	0.001585	475.6337245995954	80.81	0.25088	79.115	78.917	79.168	-1.6951					5	4	2	0	0	0	0.026101	1	6844	6844		26.75	0.85799	1	4166.3	+		21445	22937	17511	17534	23813	23813					0.17858286073783347
IVRRRSLT	8	Unmodified	_IVRRRSLT_					0	0	0			REV__ENSG00000176476|ENST00000317058|SGF29	REV__ENSG00000176476|ENST00000317058|SGF29	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.794921875	2	500.82235	999.630147	0.39467	0.00019766	1.3975	0.00069991	1.7922	0.00089757	500.8230216838018	110.67	0.36809	109.06	108.75	109.12	-1.6011					9	6	2	0	0	0	0.028476	1	10168	10168		31.955	6.3808	1	8674.1	+		21446	21953	17512	17535	23814	23814					0.13031666419556132
IVRTVAILI	9	Unmodified	_IVRTVAILI_					0	0	0			REV__ENSG00000111452|ENST00000261654|ADGRD1	REV__ENSG00000111452|ENST00000261654|ADGRD1	MULTI-MSMS	OvCa99_classI_Rep5	1	499.33905029296875	2	499.342052	996.669552	1.2559	0.00062712	0.74467	0.00037184	2.0006	0.00099896	499.34225923220697	130.77	2.4091	130.77	130.39	132.8	0					94	50	4	0	0	0	0.28934	1	15228	15228		64.207	3.2353	1	815670	+		21447	18035	17513	17536	23815	23815					0.17108373650421527
IVRVLFPGNDS	11	Unmodified	_IVRVLFPGNDS_					0	0	0		MAP1A|p.A271Dfs*54|1|0.06|ENSG00000166963|chr15:43522284-43522285|-/ACAGCAAGGAGATGCAGTT|frameshift_variant	MAP1A|p.A271Dfs*54|1|0.06|ENSG00000166963|chr15:43522284-43522285|-/ACAGCAAGGAGATGCAGTT|frameshift_variant	MAP1A|p.A271Dfs*54|1|0.06|ENSG00000166963|chr15:43522284-43522285|-/ACAGCAAGGAGATGCAGTT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	608.8361206054688	2	608.837862	1215.66117	-3.2591	-0.0019843	1.617	0.00098452	-1.642	-0.00099973	608.8386735835178	151.65	1.4083	150.69	150.4	151.81	-0.95647					78	27	4	0	0	0	0.68399	1	12962	12962		35.152	4.6484	1	213430			21448	14816	17514	17537	23816	23816					0.061967749431460106
IVSAAKAQLL	10	Unmodified	_IVSAAKAQLL_					0	0	0		nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3155822753906	2	507.321317	1012.62808	-0.49738	-0.00025233	-0.55291	-0.0002805	-1.0503	-0.00053283	507.3210368419218	105.21	0.85188	103.19	102.79	103.65	-2.0161					25	10	3	0	0	0	0.026826	1	9588	9588		44.377	30.24	1	117030			21449	896	17515	17538	23817	23817					0.1222719289107772
IVSAAKAQLL	10	Unmodified	_IVSAAKAQLL_					0	0	0		nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	507.321317	1012.62808	-1.06	-0.00053777	-0.089994	-4.5656E-05	-1.15	-0.00058343	507.32104339564086	103.7	1.1838	103.12	102.24	103.42	-0.57639	0.047402	0.0005045	NaN	33.922	35	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88485			21450	896	17515	17538							0.1222719289107772
IVSAAKAQLL	10	Unmodified	_IVSAAKAQLL_					0	0	0		nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	507.321317	1012.62808	-0.089214	-4.526E-05	-0.75686	-0.00038397	-0.84608	-0.00042923	507.32081832637124	104.52	1.1958	103.08	102.6	103.8	-1.4347	0.0064232	-0.00017214	NaN	33.922	26	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133940			21451	896	17515	17538							0.1222719289107772
IVSAFGLSI	9	Unmodified	_IVSAFGLSI_					0	0	0		ENSG00000146425|ENST00000367089|DYNLT1	ENSG00000146425|ENST00000367089|DYNLT1	ENSG00000146425|ENST00000367089|DYNLT1	MULTI-MSMS	OvCa99_classI_Rep5	1	453.76904296875	2	453.768386	905.522219	1.5899	0.00072146	0.72091	0.00032713	2.3108	0.0010486	453.7686006459686	146.84	0.54022	146.84	146.57	147.11	0					21	10	3	0	0	0	0.047062	1	17166	17166		120.62	17.848	1	93902			21452	5292	17516	17539	23818	23818					0.06567857045627079
IVSAKTENH	9	Unmodified	_IVSAKTENH_					0	0	0		tr|A0A7D6VRF9|A0A7D6VRF9_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_06815PE=4SV=1	tr|A0A7D6VRF9|A0A7D6VRF9_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_06815PE=4SV=1	tr|A0A7D6VRF9|A0A7D6VRF9_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_06815PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	499.7659606933594	2	499.766906	997.519259	0.42625	0.00021303	-4.146	-0.002072	-3.7197	-0.001859	499.76512722989173	126.31	4.05	126.07	125.5	129.55	-0.2359					192	81	3	0	0	0	0.33652	2	12321	12321;12382		58.782	5.4305	1	11682000			21453	34928	17517	17540	23819;23820	23819					0.020399819208023473
IVSELQLKL	9	Unmodified	_IVSELQLKL_					0	0	0		nc|ENSG00000123240|Q96CV9-3|OPTN;nc|ENSG00000123240|Q96CV9-2|OPTN;ENSG00000123240|ENST00000378747|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	MSMS	OvCa99_classI_Rep5	1	521.829345703125	2	521.828975	1041.6434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.79	1	108.79	108.29	109.29	0								0	0	0	0.028596	1	12310	12310		113.41	8.665	1				21454	3584	17518	17541	23821	23821					0.12424059688282796
IVSFAVPATLK	11	Unmodified	_IVSFAVPATLK_					0	0	0			REV__nc|ENSG00000140798|Q96J65|ABCC12	REV__nc|ENSG00000140798|Q96J65|ABCC12	MULTI-MSMS	OvCa99_classI_Rep5	1	573.8587646484375	2	573.350074	1144.6856	0.21495	0.00012324	3.1575	0.0018103	3.3724	0.0019336	573.3517000735841	164.39	1.2433	164.39	163.8	165.04	0					56	46	2	0	0	0	0.72521	1	19177	19177		12.812	1.3007	1	24380	+		21455	19701	17519	17542	23822	23822					0.11904035096654297
IVSFIVALLL	10	Unmodified	_IVSFIVALLL_					0	0	0		tr|A0A553SID8|A0A553SID8_NIACIGluconatepermeaseOS=NialliacirculansOX=1397GN=CEQ21_14685PE=4SV=1	tr|A0A553SID8|A0A553SID8_NIACIGluconatepermeaseOS=NialliacirculansOX=1397GN=CEQ21_14685PE=4SV=1	tr|A0A553SID8|A0A553SID8_NIACIGluconatepermeaseOS=NialliacirculansOX=1397GN=CEQ21_14685PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	544.3612060546875	2	544.359911	1086.70527	0.80347	0.00043738	1.1955	0.00065078	1.999	0.0010882	544.3604048753967	157.41	4.9209	157.41	156.9	161.82	0					252	99	4	0	0	0	0.56767	1	18593	18593		45.952	0	1	913740			21456	33370	17520	17543	23823	23823					0.16538411107444517
IVSFLEGSF	9	Unmodified	_IVSFLEGSF_					0	0	0			REV__ENST00000286800.7_1_21:30717979-30718105:+|nuORF	REV__ENST00000286800.7_1_21:30717979-30718105:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	499.76495361328125	2	499.7633	997.512048	0.42626	0.00021303	3.0681	0.0015333	3.4943	0.0017463	499.76512722989173	126.31	4.05	126.07	125.5	129.55	-0.2359					192	81	3	0	0	0	0.34496	1	12394	12394		57.811	2.3071	1	11682000	+		21457	24139	17521	17544	23824	23824					0.013192493203973754
IVSFLYQNSGL	11	Unmodified	_IVSFLYQNSGL_					0	0	0			REV__nc|ENSG00000120526|Q96RS6-3|NUDCD1	REV__nc|ENSG00000120526|Q96RS6-3|NUDCD1	MULTI-MSMS	OvCa99_classI_Rep5	1	620.8336791992188	2	620.832246	1239.64994	1.4277	0.00088637	0.55065	0.00034186	1.9784	0.0012282	620.8326426689109	135.06	0.5466	135.06	134.81	135.36	0					18	11	2	0	0	0	0.6391	1	15734	15734		25.126	4.1791	1	216980	+		21458	18503	17522	17545	23825	23825					0.039699528490018565
IVSGAFGILE	10	Unmodified	_IVSGAFGILE_					0	0	0		tr|A0A7D7A4P6|A0A7D7A4P6_9CLOTTetR/AcrRfamilytranscriptionalregulatorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03985PE=4SV=1	tr|A0A7D7A4P6|A0A7D7A4P6_9CLOTTetR/AcrRfamilytranscriptionalregulatorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03985PE=4SV=1	tr|A0A7D7A4P6|A0A7D7A4P6_9CLOTTetR/AcrRfamilytranscriptionalregulatorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03985PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	503.2815246582031	2	503.2844	1004.55425	-0.14905	-7.5014E-05	-0.1132	-5.6969E-05	-0.26224	-0.00013198	503.2841638760596	111.54	1.5769	111.4	111.03	112.61	-0.13961					88	31	4	0	0	0	0.58282	1	10561	10561		44.117	4.0586	1	340990			21459	36150	17523	17546	23826	23826					0.05215224728760859
IVSHFHKF	8	Unmodified	_IVSHFHKF_					0	0	0			REV__nc|ENSG00000166435|Q6P2D8-2|XRRA1	REV__nc|ENSG00000166435|Q6P2D8-2|XRRA1	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.2812194824219	2	507.779619	1013.54469	-0.63053	-0.00032017	3.3391	0.0016955	2.7086	0.0013754	507.78130346695633	80.931	0.61942	78.608	78.182	78.802	-2.3226					21	11	2	0	0	0	0.028476	1	4459	4459		40.573	13.88	1	988320	+		21460	21192	17524	17547	23827	23827					0.03845501233899995
IVSHFHKF	8	Unmodified	_IVSHFHKF_					0	0	0			REV__nc|ENSG00000166435|Q6P2D8-2|XRRA1	REV__nc|ENSG00000166435|Q6P2D8-2|XRRA1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	507.779619	1013.54469	-1.0431	-0.00052967	5.4351	0.0027598	4.392	0.0022302	507.7824818402489	80.935	0.49081	78.224	77.954	78.445	-2.7106	-0.19205	0.0011602	NaN	40.573	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121540	+		21461	21192	17524	17547							0.03845501233899995
IVSICSYIT	9	Unmodified	_IVSICSYIT_					0	0	0		tr|A0A7D6VSN8|A0A7D6VSN8_9CLOTABC3transporterpermeaseproteindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13645PE=4SV=1	tr|A0A7D6VSN8|A0A7D6VSN8_9CLOTABC3transporterpermeaseproteindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13645PE=4SV=1	tr|A0A7D6VSN8|A0A7D6VSN8_9CLOTABC3transporterpermeaseproteindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13645PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	499.7652893066406	2	499.764986	997.515419	0.42626	0.00021303	-0.30435	-0.00015211	0.1219	6.0922E-05	499.76512722989173	126.31	4.05	126.07	125.5	129.55	-0.2359					192	81	3	0	0	0	0.29717	3	12309	12309;12363;12406		63.306	7.8021	1	11682000			21462	35042	17525	17548	23828;23829;23830	23828					0.01656176102721929
IVSICSYIT	9	Unmodified	_IVSICSYIT_					0	0	0		tr|A0A7D6VSN8|A0A7D6VSN8_9CLOTABC3transporterpermeaseproteindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13645PE=4SV=1	tr|A0A7D6VSN8|A0A7D6VSN8_9CLOTABC3transporterpermeaseproteindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13645PE=4SV=1	tr|A0A7D6VSN8|A0A7D6VSN8_9CLOTABC3transporterpermeaseproteindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13645PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	499.7647399902344	2	499.764986	997.515419	0.8461	0.00042285	-0.85495	-0.00042727	-0.0088517	-4.4238E-06	499.7649286167221	127.27	5.5139	126.2	124.35	129.86	-1.0715					229	108	5	0	0	0	0.29717	2	10036	9988;10036		63.306	0.32785	1	11725000			21463	35042	17525	17548	23831;23832	23832					0.01656176102721929
IVSKEVAILN	10	Unmodified	_IVSKEVAILN_					0	0	0			REV__tr|A0A553SQH8|A0A553SQH8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07675PE=4SV=1	REV__tr|A0A553SQH8|A0A553SQH8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07675PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.80419921875	2	543.331882	1084.64921	0.74912	0.00040702	-0.84422	-0.00045869	-0.095097	-5.1669E-05	543.8336935663211	86.056	1.571	83.41	82.709	84.28	-2.6463					65	31	3	0	0	0	0.026464	1	7284	7284		60.118	15.741	1	93353	+		21464	30629	17526	17549	23833	23833					0.11027158199954101
IVSKEVAILN	10	Unmodified	_IVSKEVAILN_					0	0	0			REV__tr|A0A553SQH8|A0A553SQH8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07675PE=4SV=1	REV__tr|A0A553SQH8|A0A553SQH8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07675PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	543.331882	1084.64921	-1.9241	-0.0010454	2.2778	0.0012376	0.35378	0.00019222	543.8350367122333	84.775	0.89758	83.228	82.848	83.745	-1.5462	-0.17472	0.0017344	NaN	60.118	49	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65082	+		21465	30629	17526	17549							0.11027158199954101
IVSKEVAILN	10	Unmodified	_IVSKEVAILN_					0	0	0			REV__tr|A0A553SQH8|A0A553SQH8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07675PE=4SV=1	REV__tr|A0A553SQH8|A0A553SQH8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07675PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	543.331882	1084.64921	-0.97756	-0.00053114	0.89499	0.00048628	-0.08257	-4.4863E-05	543.3313364271943	85.791	1.0522	83.571	83.035	84.087	-2.2204	0.16804	0.00023166	NaN	60.118	51	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95856	+		21466	30629	17526	17549							0.11027158199954101
IVSLTYSL	8	Unmodified	_IVSLTYSL_					0	0	0			REV__tr|A0A553SMJ0|A0A553SMJ0_NIACIDUF1048domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22680PE=4SV=1	REV__tr|A0A553SMJ0|A0A553SMJ0_NIACIDUF1048domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22680PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	448.25811767578125	2	448.260394	894.506234	0.30648	0.00013738	-3.1153	-0.0013964	-2.8088	-0.0012591	448.2589237443711	143.15	0.90617	141.71	141.41	142.31	-1.4427					48	17	3	0	0	0	0.74679	1	14052	14052		28.254	5.2176	1	179280	+		21467	30335	17527	17550	23834	23834					0.05476150808715374
IVSMFNLL	8	Unmodified	_IVSMFNLL_					0	0	0			REV__nc|ENSG00000172197|Q6ZNC8-3|MBOAT1	REV__nc|ENSG00000172197|Q6ZNC8-3|MBOAT1	MULTI-SECPEP	OvCa9_classI_Rep2	2	469.2955627441406	2	468.764789	935.515025	-0.88786	-0.0004162	1.4782	0.00069294	0.59037	0.00027675	468.765237307397	103.59	0.88806	103.02	102.49	103.37	-0.57639					22	17	2	0	0	0	0.028476	1	9529	9529		29.15	0	1	17304	+		21468	21680	17528	17551	23835	23835					0.04468801173550219
IVSRKLTLD	9	Unmodified	_IVSRKLTLD_					0	0	0		tr|A0A553SRZ3|A0A553SRZ3_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_01980PE=4SV=1	tr|A0A553SRZ3|A0A553SRZ3_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_01980PE=4SV=1	tr|A0A553SRZ3|A0A553SRZ3_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_01980PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	522.8255004882812	2	522.824224	1043.63389	1.6568	0.00086619	0.27767	0.00014517	1.9344	0.0010114	522.8243309342453	77.333	1.2134	77.333	76.961	78.174	0					80	27	5	0	0	0	0.12365	1	7786	7786		90.777	8.4716	1	6892800			21469	34314	17529	17552	23836	23836					0.1138229140274234
IVSSFCADL	9	Unmodified	_IVSSFCADL_					0	0	0			REV__ENSG00000181939|ENST00000642128|OR4C15	REV__ENSG00000181939|ENST00000642128|OR4C15	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.8218688964844	2	477.733686	953.452819	-0.46837	-0.00022376	-0.24302	-0.0001161	-0.71139	-0.00033985	477.7334892193806	82.022	0.87036	79.339	79.109	79.979	-2.683					24	17	2	0	0	0	0.027441	1	6746	6746		55.504	11.387	1	48648	+		21470	22253	17530	17553	23837	23837					-0.02576969965457465
IVSSLARAVRP	11	Unmodified	_IVSSLARAVRP_					0	0	0			REV__ENST00000442920.6_1_19:57999245-58002852:+|nuORF	REV__ENST00000442920.6_1_19:57999245-58002852:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	585.3131713867188	2	584.861672	1167.70879	-1.3549	-0.00079244	4.4628	0.0026101	3.1079	0.0018177	585.3655223176922	80.766	0.58553	78.055	77.81	78.396	-2.7106					25	11	3	0	0	0	0.025746	1	6626	6626		32.812	12.816	1	65523	+		21471	24733	17531	17554	23838	23838					0.13164473933966292
IVSSYVLSM	9	Unmodified	_IVSSYVLSM_					0	0	0		tr|A0A7D6ZST1|A0A7D6ZST1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17115PE=4SV=1	tr|A0A7D6ZST1|A0A7D6ZST1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17115PE=4SV=1	tr|A0A7D6ZST1|A0A7D6ZST1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17115PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	499.76483154296875	2	499.764986	997.515419	0.8461	0.00042285	-0.85495	-0.00042727	-0.0088517	-4.4238E-06	499.7649286167221	127.27	5.5139	126.2	124.35	129.86	-1.0715					229	108	5	0	0	0	0.27546	1	9964	9964		65.803	7.9919	1	11725000			21472	35742	17532	17555	23839	23839					0.016561761027332977
IVSSYVLSM	9	Unmodified	_IVSSYVLSM_					0	0	0		tr|A0A7D6ZST1|A0A7D6ZST1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17115PE=4SV=1	tr|A0A7D6ZST1|A0A7D6ZST1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17115PE=4SV=1	tr|A0A7D6ZST1|A0A7D6ZST1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17115PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.76544189453125	2	499.764986	997.515419	-1.053	-0.00052626	0.72527	0.00036247	-0.32774	-0.00016379	499.76572667649543	127.6	4.5409	126.16	125.39	129.93	-1.4357					197	90	5	0	0	0	0.34496	1	12178	12178		57.811	0	1	12586000			21473	35742	17532	17555	23840	23840					0.016561761027332977
IVSYLKDKN	9	Unmodified	_IVSYLKDKN_					0	0	0		tr|A0A7D6VNZ0|A0A7D6VNZ0_9CLOTAdeninephosphoribosyltransferaseOS=ClostridiumintestinaleOX=36845GN=aptPE=3SV=1	tr|A0A7D6VNZ0|A0A7D6VNZ0_9CLOTAdeninephosphoribosyltransferaseOS=ClostridiumintestinaleOX=36845GN=aptPE=3SV=1	tr|A0A7D6VNZ0|A0A7D6VNZ0_9CLOTAdeninephosphoribosyltransferaseOS=ClostridiumintestinaleOX=36845GN=aptPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3082885742188	2	540.308406	1078.60226	1.0443	0.00056423	2.0015	0.0010814	3.0457	0.0016456	540.309234949539	130.25	0.98904	129.14	128.83	129.82	-1.1121					35	19	2	0	0	0	0.40818	1	10333	10333		51.193	1.7511	1	40483			21474	34739	17533	17556	23841	23841					0.0661029864882039
IVSYVYKRSE	10	Unmodified	_IVSYVYKRSE_					0	0	0		tr|A0A553SGS7|A0A553SGS7_NIACI2-keto-3-deoxygluconatepermeaseOS=NialliacirculansOX=1397GN=CEQ21_11385PE=3SV=1	tr|A0A553SGS7|A0A553SGS7_NIACI2-keto-3-deoxygluconatepermeaseOS=NialliacirculansOX=1397GN=CEQ21_11385PE=3SV=1	tr|A0A553SGS7|A0A553SGS7_NIACI2-keto-3-deoxygluconatepermeaseOS=NialliacirculansOX=1397GN=CEQ21_11385PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	622.336669921875	2	622.337695	1242.66084	0.46643	0.00029028	-0.38929	-0.00024227	0.077142	4.8008E-05	622.3373220061544	159.06	1.8648	159.06	158.69	160.56	0					99	37	4	0	0	0	0.69073	1	18714	18714		31.53	1.0262	1	3450400			21475	33190	17534	17557	23842	23842					0.0492135522326862
IVTARPLNTV	10	Unmodified	_IVTARPLNTV_					0	0	0		FAT3|p.R2620Pfs*14|1|0.65|ENSG00000165323|chr11:92801322-92801322|G/-|frameshift_variant;FAT3|p.L1330Cfs*14|1|0.06|ENSG00000165323|chr11:92790044-92790044|C/-|frameshift_variant;FAT3|p.D1442Qfs*16|1|0.03|ENSG00000165323|chr11:92792928-92792929|-/CAAAT|frameshift_variant;FAT3|p.P2978Rfs*15|1|0.06|ENSG00000165323|chr11:92809977-92809978|-/GTTGCATCCTACAAGGAAGCACTGA|frameshift_variant;nc|ENSG00000165323|Q8TDW7-2|FAT3;FAT3|p.F3345Lfs*103|1|0.08|ENSG00000165323|chr11:92840677-92840678|-/AGTTGCCAGGATGTCCCCCCAAAAAA|frameshift_variant;FAT3|p.L3490Wfs*79|1|0.04|ENSG00000165323|chr11:92844285-92844285|T/-|frameshift_variant;FAT3|p.F3624Pfs*89|1|0.54|ENSG00000165323|chr11:92844685-92844686|-/CC|frameshift_variant;FAT3|p.V3625Sfs*97|1|0.52|ENSG00000165323|chr11:92844687-92844688|-/TCTCCATGAATTTTACATTCCAGCATCTC|frameshift_variant;nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3	FAT3|p.R2620Pfs*14|1|0.65|ENSG00000165323|chr11:92801322-92801322|G/-|frameshift_variant;FAT3|p.F3345Lfs*103|1|0.08|ENSG00000165323|chr11:92840677-92840678|-/AGTTGCCAGGATGTCCCCCCAAAAAA|frameshift_variant	FAT3|p.F3345Lfs*103|1|0.08|ENSG00000165323|chr11:92840677-92840678|-/AGTTGCCAGGATGTCCCCCCAAAAAA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.8226318359375	2	542.329673	1082.64479	-1.0727	-0.00058176	0.28071	0.00015224	-0.79199	-0.00042952	542.3298721536418	101.53	1.4297	99.261	99.02	100.45	-2.2665					40	27	2	0	0	0	0.026826	1	9221	9221		52.937	27.363	1	73560			21476	14324;6551	17535	17558	23843	23843					0.10677693777029162
IVTARPLNTV	10	Unmodified	_IVTARPLNTV_					0	0	0		FAT3|p.R2620Pfs*14|1|0.65|ENSG00000165323|chr11:92801322-92801322|G/-|frameshift_variant;FAT3|p.L1330Cfs*14|1|0.06|ENSG00000165323|chr11:92790044-92790044|C/-|frameshift_variant;FAT3|p.D1442Qfs*16|1|0.03|ENSG00000165323|chr11:92792928-92792929|-/CAAAT|frameshift_variant;FAT3|p.P2978Rfs*15|1|0.06|ENSG00000165323|chr11:92809977-92809978|-/GTTGCATCCTACAAGGAAGCACTGA|frameshift_variant;nc|ENSG00000165323|Q8TDW7-2|FAT3;FAT3|p.F3345Lfs*103|1|0.08|ENSG00000165323|chr11:92840677-92840678|-/AGTTGCCAGGATGTCCCCCCAAAAAA|frameshift_variant;FAT3|p.L3490Wfs*79|1|0.04|ENSG00000165323|chr11:92844285-92844285|T/-|frameshift_variant;FAT3|p.F3624Pfs*89|1|0.54|ENSG00000165323|chr11:92844685-92844686|-/CC|frameshift_variant;FAT3|p.V3625Sfs*97|1|0.52|ENSG00000165323|chr11:92844687-92844688|-/TCTCCATGAATTTTACATTCCAGCATCTC|frameshift_variant;nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3	FAT3|p.R2620Pfs*14|1|0.65|ENSG00000165323|chr11:92801322-92801322|G/-|frameshift_variant;FAT3|p.F3345Lfs*103|1|0.08|ENSG00000165323|chr11:92840677-92840678|-/AGTTGCCAGGATGTCCCCCCAAAAAA|frameshift_variant	FAT3|p.F3345Lfs*103|1|0.08|ENSG00000165323|chr11:92840677-92840678|-/AGTTGCCAGGATGTCCCCCCAAAAAA|frameshift_variant	MULTI-MATCH	OvCa99_classI_Rep5	1		2	542.329673	1082.64479	2.8686	0.0015557	-0.98886	-0.00053629	1.8797	0.0010194	542.3290889809119	99.115	0.44038	99.115	98.877	99.318	0	-0.13038	-0.0010495	NaN	44.377	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	789260			21477	14324;6551	17535	17558							0.10677693777029162
IVTARPLNTV	10	Unmodified	_IVTARPLNTV_					0	0	0		FAT3|p.R2620Pfs*14|1|0.65|ENSG00000165323|chr11:92801322-92801322|G/-|frameshift_variant;FAT3|p.L1330Cfs*14|1|0.06|ENSG00000165323|chr11:92790044-92790044|C/-|frameshift_variant;FAT3|p.D1442Qfs*16|1|0.03|ENSG00000165323|chr11:92792928-92792929|-/CAAAT|frameshift_variant;FAT3|p.P2978Rfs*15|1|0.06|ENSG00000165323|chr11:92809977-92809978|-/GTTGCATCCTACAAGGAAGCACTGA|frameshift_variant;nc|ENSG00000165323|Q8TDW7-2|FAT3;FAT3|p.F3345Lfs*103|1|0.08|ENSG00000165323|chr11:92840677-92840678|-/AGTTGCCAGGATGTCCCCCCAAAAAA|frameshift_variant;FAT3|p.L3490Wfs*79|1|0.04|ENSG00000165323|chr11:92844285-92844285|T/-|frameshift_variant;FAT3|p.F3624Pfs*89|1|0.54|ENSG00000165323|chr11:92844685-92844686|-/CC|frameshift_variant;FAT3|p.V3625Sfs*97|1|0.52|ENSG00000165323|chr11:92844687-92844688|-/TCTCCATGAATTTTACATTCCAGCATCTC|frameshift_variant;nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3	FAT3|p.R2620Pfs*14|1|0.65|ENSG00000165323|chr11:92801322-92801322|G/-|frameshift_variant;FAT3|p.F3345Lfs*103|1|0.08|ENSG00000165323|chr11:92840677-92840678|-/AGTTGCCAGGATGTCCCCCCAAAAAA|frameshift_variant	FAT3|p.F3345Lfs*103|1|0.08|ENSG00000165323|chr11:92840677-92840678|-/AGTTGCCAGGATGTCCCCCCAAAAAA|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.329673	1082.64479	-1.4318	-0.00077649	0.75575	0.00040987	-0.67602	-0.00036663	542.3298672799091	100.12	1.0904	99.285	98.716	99.807	-0.83051	0.04006	0.00084281	NaN	44.377	41	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75471			21478	14324;6551	17535	17558							0.10677693777029162
IVTARPLNTV	10	Unmodified	_IVTARPLNTV_					0	0	0		FAT3|p.R2620Pfs*14|1|0.65|ENSG00000165323|chr11:92801322-92801322|G/-|frameshift_variant;FAT3|p.L1330Cfs*14|1|0.06|ENSG00000165323|chr11:92790044-92790044|C/-|frameshift_variant;FAT3|p.D1442Qfs*16|1|0.03|ENSG00000165323|chr11:92792928-92792929|-/CAAAT|frameshift_variant;FAT3|p.P2978Rfs*15|1|0.06|ENSG00000165323|chr11:92809977-92809978|-/GTTGCATCCTACAAGGAAGCACTGA|frameshift_variant;nc|ENSG00000165323|Q8TDW7-2|FAT3;FAT3|p.F3345Lfs*103|1|0.08|ENSG00000165323|chr11:92840677-92840678|-/AGTTGCCAGGATGTCCCCCCAAAAAA|frameshift_variant;FAT3|p.L3490Wfs*79|1|0.04|ENSG00000165323|chr11:92844285-92844285|T/-|frameshift_variant;FAT3|p.F3624Pfs*89|1|0.54|ENSG00000165323|chr11:92844685-92844686|-/CC|frameshift_variant;FAT3|p.V3625Sfs*97|1|0.52|ENSG00000165323|chr11:92844687-92844688|-/TCTCCATGAATTTTACATTCCAGCATCTC|frameshift_variant;nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3	FAT3|p.R2620Pfs*14|1|0.65|ENSG00000165323|chr11:92801322-92801322|G/-|frameshift_variant;FAT3|p.F3345Lfs*103|1|0.08|ENSG00000165323|chr11:92840677-92840678|-/AGTTGCCAGGATGTCCCCCCAAAAAA|frameshift_variant	FAT3|p.F3345Lfs*103|1|0.08|ENSG00000165323|chr11:92840677-92840678|-/AGTTGCCAGGATGTCCCCCCAAAAAA|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	542.329673	1082.64479	-0.56276	-0.0003052	-0.070107	-3.8021E-05	-0.63286	-0.00034322	542.3297248595561	100.92	1.2797	99.319	98.85	100.13	-1.6053	0.074216	-5.2966E-05	NaN	44.377	38	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119050			21479	14324;6551	17535	17558							0.10677693777029162
IVTFVNITE	9	Unmodified	_IVTFVNITE_					0	0	0		tr|A0A553SS35|A0A553SS35_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_02395PE=4SV=1	tr|A0A553SS35|A0A553SS35_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_02395PE=4SV=1	tr|A0A553SS35|A0A553SS35_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_02395PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.7543334960938	2	518.289682	1034.56481	0.23505	0.00012182	-0.70389	-0.00036482	-0.46884	-0.000243	518.2890724385459	99.117	0.6116	97.432	97.165	97.777	-1.685					21	11	2	0	0	0	0.027343	1	6692	6692		68.787	2.3575	1	72270			21480	34328	17536	17559	23844	23844					0.04891207383184337
IVTGWKQAI	9	Unmodified	_IVTGWKQAI_					0	0	0			REV__tr|A0A7D6VPK6|A0A7D6VPK6_9CLOTHydroxyethylthiazolekinaseOS=ClostridiumintestinaleOX=36845GN=thiMPE=3SV=1	REV__tr|A0A7D6VPK6|A0A7D6VPK6_9CLOTHydroxyethylthiazolekinaseOS=ClostridiumintestinaleOX=36845GN=thiMPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	508.30908203125	2	508.300384	1014.58622	-1.2179	-0.00061906	3.8087	0.001936	2.5908	0.0013169	508.30222432035663	82.41	2.3047	80.114	79.182	81.487	-2.2963					153	46	5	0	0	0	0.11171	1	4677	4677		94.006	0.81096	1	1883000	+		21481	31256	17537	17560	23845	23845					0.07950637202554844
IVTLIIPN	8	Unmodified	_IVTLIIPN_					0	0	0			REV__tr|A0A7D6VTP1|A0A7D6VTP1_9CLOTRibonucleaseJOS=ClostridiumintestinaleOX=36845GN=rnjPE=3SV=1	REV__tr|A0A7D6VTP1|A0A7D6VTP1_9CLOTRibonucleaseJOS=ClostridiumintestinaleOX=36845GN=rnjPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	441.7887878417969	2	441.786579	881.558604	-1.0261	-0.0004533	3.9619	0.0017503	2.9359	0.001297	441.78822257367193	65.749	1.6562	62.264	61.84	63.496	-3.4854					83	33	3	0	0	0	0.7224	1	4757	4757		38.806	3.6054	1	467330	+		21482	31619	17538	17561	23846	23846					0.11308733942314575
IVTLVARVL	9	Unmodified	_IVTLVARVL_					0	0	0		ENSG00000135577|ENST00000258042|NMBR	ENSG00000135577|ENST00000258042|NMBR	ENSG00000135577|ENST00000258042|NMBR	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.27154541015625	2	492.334227	982.653902	-0.90138	-0.00044378	-0.81749	-0.00040248	-1.7189	-0.00084626	492.3334979595399	100.2	0.81654	98.598	98.377	99.194	-1.6053					26	16	2	0	0	0	0.027462	1	6830	6830		17.365	9.6747	1	38507			21483	4390	17539	17562	23847	23847					0.1618808713335511
IVTLVARVL	9	Unmodified	_IVTLVARVL_					0	0	0		ENSG00000135577|ENST00000258042|NMBR	ENSG00000135577|ENST00000258042|NMBR	ENSG00000135577|ENST00000258042|NMBR	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	492.334227	982.653902	-0.66854	-0.00032915	-0.1686	-8.3008E-05	-0.83714	-0.00041215	492.3340887206868	100.78	0.45665	98.517	98.29	98.746	-2.2665	-0.040473	0.00028759	NaN	16.473	21	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54772			21484	4390	17539	17562							0.1618808713335511
IVTNHKGTE	9	Unmodified	_IVTNHKGTE_					0	0	0			REV__tr|A0A553SGI0|A0A553SGI0_NIACIGlutamine--tRNAligaseOS=NialliacirculansOX=1397GN=glnSPE=3SV=1	REV__tr|A0A553SGI0|A0A553SGI0_NIACIGlutamine--tRNAligaseOS=NialliacirculansOX=1397GN=glnSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.76422119140625	2	499.766906	997.519259	-1.053	-0.00052626	-3.1163	-0.0015574	-4.1694	-0.0020837	499.76572667649543	127.6	4.5409	126.16	125.39	129.93	-1.4357					197	90	5	0	0	0	0.59259	1	12145	12145		32.812	0	1	12586000	+		21485	29702	17540	17563	23848	23848					0.02039981920813716
IVTQLGEIY	9	Unmodified	_IVTQLGEIY_					0	0	0			REV__ENSG00000100056|ENST00000252137|ESS2	REV__ENSG00000100056|ENST00000252137|ESS2	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.796875	2	518.289682	1034.56481	1.5449	0.00080073	-0.78208	-0.00040535	0.76285	0.00039538	518.2891503111301	111.19	1.1376	110.09	109.9	111.04	-1.1038					37	22	2	0	0	0	0.027462	1	8047	8047		20.947	0	1	149490	+		21486	17358	17541	17564	23849	23849					0.048912073832070746
IVTRRAQRA	9	Unmodified	_IVTRRAQRA_					0	0	0		ENST00000345097.8_1_14:89628116-89628290:-|nuORF	ENST00000345097.8_1_14:89628116-89628290:-|nuORF	ENST00000345097.8_1_14:89628116-89628290:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.815673828125	2	535.830706	1069.64686	2.0475	0.0010971	-3.226	-0.0017286	-1.1785	-0.00063149	535.828761762661	82.142	0.24542	82.142	82.061	82.307	0					7	5	2	0	0	0	0.027462	1	8494	8494		29.15	16.338	1	113560			21487	10619	17542	17565	23850	23850					0.11482167305507573
IVTSGSGHRL	10	Unmodified	_IVTSGSGHRL_					0	0	0		nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-MSMS	OvCa9_classI_Rep2	2	513.7879028320312	2	513.788173	1025.56179	-2.373	-0.0012192	2.0043	0.0010298	-0.36869	-0.00018943	513.7891502235217	35.972	1.0398	33.262	33.001	34.041	-2.7097					32	20	3	0	0	0	0.67931	1	1505	1505		32.812	0.85756	1	59206			21488	6983	17543	17566	23851	23851					0.05003377049047231
IVTSGSGHRL	10	Unmodified	_IVTSGSGHRL_					0	0	0		nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	513.788173	1025.56179	0.80148	0.00041179	-0.92901	-0.00047731	-0.12753	-6.5523E-05	513.7871978946488	36.529	0.64631	33.637	33.446	34.092	-2.8925	0.18751	-0.0027755	NaN	32.812	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14062			21489	6983	17543	17566							0.05003377049047231
IVTVLLRQ	8	Unmodified	_IVTVLLRQ_					0	0	0			REV__nc|ENSG00000076344|O94810-3|RGS11	REV__nc|ENSG00000076344|O94810-3|RGS11	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.3112487792969	2	471.310752	940.606951	1.3289	0.00062632	-1.6854	-0.00079433	-0.35646	-0.000168	471.3099028886094	32.057	2.5601	29.362	28.732	31.293	-2.6954					224	67	4	0	0	0	0.7043	1	699	699		42.474	0	1	1074400	+		21490	16989	17544	17567	23852	23852					0.13427227582235446
IVTWLLSRT	9	Unmodified	_IVTWLLSRT_					0	0	0			REV__tr|A0A553SS30|A0A553SS30_NIACIAzlDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02280PE=4SV=1	REV__tr|A0A553SS30|A0A553SS30_NIACIAzlDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02280PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.80615234375	2	544.826766	1087.63898	-2.0544	-0.0011193	0.58426	0.00031832	-1.4702	-0.00080098	544.8271377520703	104.3	0.55371	104.3	104.06	104.62	0					24	12	3	0	0	0	0.027453	1	11705	11705		54.776	10.66	1	147560	+		21491	30796	17545	17568	23853	23853					0.09866595265384603
IVVAGWTDVFA	11	Unmodified	_IVVAGWTDVFA_					0	0	0			REV__tr|A0A553SLX6|A0A553SLX6_NIACIAmmoniumtransporterOS=NialliacirculansOX=1397GN=CEQ21_21475PE=3SV=1	REV__tr|A0A553SLX6|A0A553SLX6_NIACIAmmoniumtransporterOS=NialliacirculansOX=1397GN=CEQ21_21475PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	589.317138671875	2	589.316232	1176.61791	3.3942	0.0020003	-2.6885	-0.0015844	0.70573	0.0004159	589.3144104722435	24.985	0.67472	22.276	22.153	22.828	-2.7097					32	15	3	0	0	0	0.72244	1	198	198		21.96	1.9631	1	69599	+		21492	30276	17546	17569	23854	23854					0.03666585165842662
IVVALKKTL	9	Unmodified	_IVVALKKTL_					0	0	0			REV__tr|A0A553SFP9|A0A553SFP9_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09240PE=4SV=1	REV__tr|A0A553SFP9|A0A553SFP9_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09240PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	492.2931213378906	2	492.844428	983.674303	-1.2578	-0.00061989	0.28605	0.00014098	-0.97172	-0.00047891	492.8445870485586	83.423	0.57339	81.162	80.816	81.39	-2.261					15	11	2	0	0	0	0.027462	1	4771	4771		29.15	0	1	17047	+		21493	29602	17547	17570	23855	23855					0.1818125779316233
IVVCIMGWW	9	Unmodified	_IVVCIMGWW_					0	0	0		sp|Q6SWC3|UL07_HCMVMCEACAM1-likeproteinUL7OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL7PE=3SV=1;sp|P16743|UL07_HCMVACEACAM1-likeproteinUL7OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL7PE=1SV=1	sp|Q6SWC3|UL07_HCMVMCEACAM1-likeproteinUL7OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL7PE=3SV=1	sp|Q6SWC3|UL07_HCMVMCEACAM1-likeproteinUL7OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL7PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.7811889648438	2	553.779916	1105.54528	2.4903	0.0013791	2.7133	0.0015026	5.2036	0.0028816	553.7811183484848	136.46	1.3646	134.92	134.74	136.11	-1.5437					37	27	2	0	0	0	0.42921	1	13268	13268		49.211	3.2385	1	33959			21494	32892	17548	17571	23856	23856					-0.0032716343293941463
IVVCIMGWW	9	Unmodified	_IVVCIMGWW_					0	0	0		sp|Q6SWC3|UL07_HCMVMCEACAM1-likeproteinUL7OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL7PE=3SV=1;sp|P16743|UL07_HCMVACEACAM1-likeproteinUL7OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL7PE=1SV=1	sp|Q6SWC3|UL07_HCMVMCEACAM1-likeproteinUL7OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL7PE=3SV=1	sp|Q6SWC3|UL07_HCMVMCEACAM1-likeproteinUL7OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL7PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	553.779916	1105.54528	0.54394	0.00030122	4.4769	0.0024792	5.0209	0.0027805	553.7821426987107	135.53	0.7361	135.3	134.88	135.62	-0.22696	0.16517	-0.00066012	NaN	49.211	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38008			21495	32892	17548	17571							-0.0032716343293941463
IVVCIMGWW	9	Unmodified	_IVVCIMGWW_					0	0	0		sp|Q6SWC3|UL07_HCMVMCEACAM1-likeproteinUL7OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL7PE=3SV=1;sp|P16743|UL07_HCMVACEACAM1-likeproteinUL7OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL7PE=1SV=1	sp|Q6SWC3|UL07_HCMVMCEACAM1-likeproteinUL7OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL7PE=3SV=1	sp|Q6SWC3|UL07_HCMVMCEACAM1-likeproteinUL7OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL7PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	553.779916	1105.54528	-1.5114	-0.000837	6.7074	0.0037144	5.196	0.0028774	553.7834209507516	136.29	1.3774	135.18	134.75	136.13	-1.1076	0.051424	0.0018103	NaN	49.211	43	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23902			21496	32892	17548	17571							-0.0032716343293941463
IVVCMVLD	8	Unmodified	_IVVCMVLD_					0	0	0			REV__ENSG00000197136|ENST00000355703|PCNX3	REV__ENSG00000197136|ENST00000355703|PCNX3	MULTI-MSMS	OvCa99_classI_Rep5	1	446.2436828613281	2	446.23755	890.460547	0.32917	0.00014689	-0.084984	-3.7923E-05	0.24419	0.00010897	446.23745887869813	54.356	1.2664	54.356	54.048	55.315	0					82	29	4	0	0	0	0.64377	1	4418	4418		54.765	1.4132	1	13170000	+		21497	22895	17549	17572	23857	23857					0.010934660304542376
IVVEHIIMK	9	Unmodified	_IVVEHIIMK_					0	0	0		ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	ENSG00000109133|ENST00000504986|TMEM33	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2939453125	2	541.325545	1080.63654	2.5232	0.0013659	1.4016	0.00075873	3.9248	0.0021246	541.327409961827	98.77	0.51168	98.77	98.683	99.195	0					16	12	2	0	0	0	0.027462	1	10954	10954		55.504	28.811	1	456530			21498	2702	17550	17573	23858	23858					0.09944423536057911
IVVGGAAEALL	11	Unmodified	_IVVGGAAEALL_					0	0	0		ENSG00000184210|ENST00000333026|DGAT2L6	ENSG00000184210|ENST00000333026|DGAT2L6	ENSG00000184210|ENST00000333026|DGAT2L6	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.7829284667969	2	506.8055	1011.59645	1.117	0.00056613	-2.6874	-0.001362	-1.5703	-0.00079585	506.80386455892443	150.44	0.64874	150.44	150.14	150.79	0					18	12	2	0	0	0	0.025239	1	17612	17612		58.782	5.4305	1	27014			21499	8136	17551	17574	23859	23859					0.09111200137124342
IVVILLISE	9	Unmodified	_IVVILLISE_					0	0	0			REV__tr|A0A553SHF6|A0A553SHF6_NIACIProteinkinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_12810PE=4SV=1	REV__tr|A0A553SHF6|A0A553SHF6_NIACIProteinkinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_12810PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.7646484375	2	499.828443	997.642334	0.8578	0.00042875	4.3512	0.0021749	5.209	0.0026036	499.8309975722818	127.31	0.46552	126.23	126.07	126.54	-1.0715					11	8	2	0	0	0	0.027449	1	9958	9958		40.573	0	1	14337	+		21500	29798	17552	17575	23860	23860					0.1434184531937035
IVVKLEIK	8	Unmodified	_IVVKLEIK_					0	0	0			REV__tr|A0A553SNS6|A0A553SNS6_NIACIalpha-L-rhamnosidaseOS=NialliacirculansOX=1397GN=CEQ21_24995PE=4SV=1	REV__tr|A0A553SNS6|A0A553SNS6_NIACIalpha-L-rhamnosidaseOS=NialliacirculansOX=1397GN=CEQ21_24995PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.2768859863281	2	471.323328	940.632104	2.0129	0.00094871	-2.0128	-0.00094867	8.1504E-05	3.8415E-08	471.3222003116497	85.962	0.74934	83.316	83.091	83.841	-2.6463					15	14	2	0	0	0	0.028476	1	7292	7292		33.516	0	1	15830	+		21501	30445	17553	17576	23861	23861					0.15941282384778788
IVVKLLENQ	9	Unmodified	_IVVKLLENQ_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.8132934570312	2	528.326599	1054.63865	1.5971	0.0008438	3.1928	0.0016868	4.7899	0.0025306	528.3286711002041	127.77	1.761	127.77	127.4	129.17	0					95	37	4	0	0	0	0.027402	1	14767	14767		56.721	1.9447	1	3490600	+		21502	16701	17554	17577	23862	23862					0.11351175545519254
IVVLPKED	8	Unmodified	_IVVLPKED_					0	0	0		ENSG00000068097|ENST00000184956|HEATR6	ENSG00000068097|ENST00000184956|HEATR6	ENSG00000068097|ENST00000184956|HEATR6	MULTI-MSMS	OvCa9_classI_Rep3	3	456.7719421386719	2	456.773668	911.532783	-2.6183	-0.001196	-0.38222	-0.00017459	-3.0005	-0.0013706	456.77340273142477	142.71	1.7302	141.7	141.28	143.01	-1.0106					71	34	3	0	0	0	0.75426	1	11900	11900		18.324	1.8513	1	453300			21503	1386	17555	17578	23863	23863					0.07347839700048553
IVVLQAKKN	9	Unmodified	_IVVLQAKKN_					0	0	0			REV__ENST00000424559.2_1_22:19780074-19780431:+|nuORF	REV__ENST00000424559.2_1_22:19780074-19780431:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.8036193847656	2	506.829309	1011.64407	-1.088	-0.00055143	0.90804	0.00046022	-0.17997	-9.1214E-05	506.8295218331371	69.892	0.61402	69.892	69.672	70.286	0					22	14	2	0	0	0	0.027462	1	6671	6671		33.516	0	1	854860	+		21504	20101	17556	17579	23864	23864					0.1387089912797137
IVVLTPEGI	9	Unmodified	_IVVLTPEGI_					0	0	0		tr|A0A7D7A1D5|A0A7D7A1D5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20410PE=4SV=1	tr|A0A7D7A1D5|A0A7D7A1D5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20410PE=4SV=1	tr|A0A7D7A1D5|A0A7D7A1D5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20410PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	470.7874450683594	2	470.789318	939.564084	0.23229	0.00010936	-3.7502	-0.0017656	-3.5179	-0.0016562	470.78745923109625	40.781	2.1682	38.071	37.601	39.769	-2.7097					104	43	4	0	0	0	0.44294	1	2142	2142		47.916	1.9636	1	1630700			21505	36035	17557	17580	23865	23865					0.09188412734147278
IVVNNPDLL	9	Unmodified	_IVVNNPDLL_					0	0	0		nc|ENSG00000163964|Q8TBF5-2|PIGX;ENSG00000163964|ENST00000392391|PIGX	nc|ENSG00000163964|Q8TBF5-2|PIGX	nc|ENSG00000163964|Q8TBF5-2|PIGX	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.7897644042969	2	498.78985	995.565146	-0.32841	-0.00016381	-0.93942	-0.00046857	-1.2678	-0.00063238	498.78933667981374	116.43	2.9591	115.07	114.6	117.56	-1.3645					206	56	7	0	0	0	0.079296	1	10856	10856		102.77	25.456	1	3166500			21506	6390	17558	17581	23866	23866					0.06718627103043673
IVVPDPEVM	9	Unmodified	_IVVPDPEVM_					0	0	0		nc|ENSG00000164398|Q9UKU0-2|ACSL6;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6;nc|ENSG00000164398|Q9UKU0-7|ACSL6;nc|ENSG00000164398|Q9UKU0-5|ACSL6;nc|ENSG00000164398|Q9UKU0|ACSL6;nc|ENSG00000164398|Q9UKU0-9|ACSL6;nc|ENSG00000164398|Q9UKU0-6|ACSL6;ENSG00000164398|ENST00000651883|ACSL6	nc|ENSG00000164398|Q9UKU0-2|ACSL6	nc|ENSG00000164398|Q9UKU0-2|ACSL6	MULTI-MSMS	OvCa9_classI_Rep3	3	499.76556396484375	2	499.764986	997.515419	0.8461	0.00042285	-0.85495	-0.00042727	-0.0088517	-4.4238E-06	499.7649286167221	127.27	5.5139	126.2	124.35	129.86	-1.0715					229	108	5	0	0	0	0.42057	1	10030	10030		50.025	2.1089	1	11725000			21507	15145	17559	17582	23867	23867					0.016561761027332977
IVVPPGNRSV	10	Unmodified	_IVVPPGNRSV_					0	0	0		SDK1|p.G1830Rfs*24|1|0.09|ENSG00000146555|chr7:4210109-4210110|-/CAGACAATGGACTC|frameshift_variant;nc|ENSG00000146555|Q7Z5N4-3|SDK1;ENSG00000146555|ENST00000404826|SDK1;SDK1|p.Y739Ifs*8|1|0.12|ENSG00000146555|chr7:4011049-4011049|T/-|frameshift_variant;SDK1|p.V776Gfs*52|1|0.09|ENSG00000146555|chr7:4012142-4012142|T/-|frameshift_variant;SDK1|p.L1190Afs*107|1|0.14|ENSG00000146555|chr7:4113417-4113418|-/AT|frameshift_variant;ENST00000478527.1_1_7:3990577-3991593:+|nuORF	SDK1|p.G1830Rfs*24|1|0.09|ENSG00000146555|chr7:4210109-4210110|-/CAGACAATGGACTC|frameshift_variant	SDK1|p.G1830Rfs*24|1|0.09|ENSG00000146555|chr7:4210109-4210110|-/CAGACAATGGACTC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.7420654296875	2	519.308741	1036.60293	-0.51952	-0.00026979	-0.045974	-2.3875E-05	-0.56549	-0.00029366	519.3085965914114	56.668	0.45905	56.668	56.459	56.918	0					21	10	3	0	0	0	0.027147	1	4714	4714		21.96	7.095	1	816030			21508	5298	17560	17583	23868	23868					0.08609138088513646
IVVRVHRMA	9	Unmodified	_IVVRVHRMA_					0	0	0		nc|ENSG00000126091|Q11203-20|ST3GAL3	nc|ENSG00000126091|Q11203-20|ST3GAL3	nc|ENSG00000126091|Q11203-20|ST3GAL3	MULTI-MSMS	OvCa9_classI_Rep2	2	540.8221435546875	2	540.826578	1079.6386	-4.8647	-0.0026309	0.47844	0.00025876	-4.3862	-0.0023722	540.8266722246311	155.61	0.48663	155.38	155.16	155.64	-0.22696					29	17	2	0	0	0	0.67509	1	15853	15853		23.042	4.7181	1	25176			21509	15003	17561	17584	23869	23869					0.10196897064543009
IVVRWSRP	8	Unmodified	_IVVRWSRP_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-12|FN1;FN1-SEC31A|2|fusion;FN1|p.E1684*|1|0.04|ENSG00000115414|chr2:215380922-215380923|-/A|frameshift_variant;FN1-SEC31A|1|fusion	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.2662658691406	2	506.806168	1011.59778	0.70094	0.00035524	-3.2941	-0.0016695	-2.5931	-0.0013142	506.8043109610337	87.378	0.59904	85.947	85.491	86.09	-1.4311					18	11	2	0	0	0	0.028476	1	7589	7589		38.806	16.846	1	42141			21510	3093	17562	17585	23870	23870					0.09244879016557661
IVVSAIVFTL	10	Unmodified	_IVVSAIVFTL_					0	0	0		tr|A0A553SLX3|A0A553SLX3_NIACIPermeaseOS=NialliacirculansOX=1397GN=CEQ21_21445PE=3SV=1	tr|A0A553SLX3|A0A553SLX3_NIACIPermeaseOS=NialliacirculansOX=1397GN=CEQ21_21445PE=3SV=1	tr|A0A553SLX3|A0A553SLX3_NIACIPermeaseOS=NialliacirculansOX=1397GN=CEQ21_21445PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.3175048828125	2	531.333893	1060.65323	2.3931	0.0012715	1.4877	0.00079045	3.8807	0.002062	531.3344284586258	106.43	0.57571	106.43	106.14	106.72	0					24	12	3	0	0	0	0.027213	1	12005	12005		87.754	10.908	1	208980			21511	33773	17563	17586	23871	23871					0.12533247693659177
IVVSLRFP	8	Unmodified	_IVVSLRFP_					0	0	0		nc|ENSG00000167528|Q96N77-2|ZNF641;ENSG00000167528|ENST00000547026|ZNF641;nc|ENSG00000167528|Q96N77|ZNF641	nc|ENSG00000167528|Q96N77-2|ZNF641	nc|ENSG00000167528|Q96N77-2|ZNF641	MULTI-MSMS	OvCa99_classI_Rep5	1	465.79412841796875	2	465.792195	929.569838	1.9932	0.00092842	0.23633	0.00011008	2.2295	0.0010385	465.7921595132162	92.013	1.2149	92.013	91.711	92.926	0					75	28	4	0	0	0	0.67745	1	9914	9914		47.916	5.4411	1	7048400			21512	6799	17564	17587	23872	23872					0.10223556036476111
IVVSSTLGIL	10	Unmodified	_IVVSSTLGIL_					0	0	0		tr|A0A553SIG3|A0A553SIG3_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14705PE=4SV=1	tr|A0A553SIG3|A0A553SIG3_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14705PE=4SV=1	tr|A0A553SIG3|A0A553SIG3_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14705PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.301025390625	2	501.3157	1000.61685	-1.4434	-0.00072359	-0.53285	-0.00026712	-1.9762	-0.00099072	501.81754462091567	102.99	0.34489	102.3	102.18	102.53	-0.68459					8	6	2	0	0	0	0.026523	1	9498	9498		68.787	15.435	1	19956			21513	33379	17565	17588	23873	23873					0.11656370796947613
IVVVKVLLLR	10	Unmodified	_IVVVKVLLLR_					0	0	0		ADAMTS15|p.D340Afs*10|1|0.12|ENSG00000166106|chr11:130461549-130461550|-/C|frameshift_variant;ENSG00000166106|ENST00000299164|ADAMTS15	ADAMTS15|p.D340Afs*10|1|0.12|ENSG00000166106|chr11:130461549-130461550|-/C|frameshift_variant	ADAMTS15|p.D340Afs*10|1|0.12|ENSG00000166106|chr11:130461549-130461550|-/C|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	576.3535766601562	2	576.415552	1150.81655	-0.51078	-0.00029442	-2.8385	-0.0016362	-3.3493	-0.0019306	576.4139398877601	72.188	0.19798	69.586	69.472	69.67	-2.6023					6	3	2	0	0	0	0.026697	1	3419	3419		29.15	1.2673	1	4880.4			21514	30	17566	17589	23874	23874					0.24717470535347275
IVWDGDTTRQV	11	Unmodified	_IVWDGDTTRQV_					0	0	0		nc|ENSG00000164253|Q9HAD4-2|WDR41;ENSG00000164253|ENST00000296679|WDR41;ENST00000507239.5_1_5:76754877-76788045:-|nuORF;ENST00000507452.5_1_5:76747118-76788033:-|nuORF	nc|ENSG00000164253|Q9HAD4-2|WDR41	nc|ENSG00000164253|Q9HAD4-2|WDR41	MULTI-MSMS	OvCa9_classI_Rep2	2	645.3245849609375	2	645.327859	1288.64116	-1.4341	-0.00092546	-0.9997	-0.00064514	-2.4338	-0.0015706	645.327117611008	98.778	3.0684	97.885	96.974	100.04	-0.89305					168	61	4	0	0	0	0.68021	2	8992	8929;8992		36.447	9.7538	1	979390			21515	6437	17567	17590	23875;23876	23876					0.00838979212517188
IVWDGDTTRQV	11	Unmodified	_IVWDGDTTRQV_					0	0	0		nc|ENSG00000164253|Q9HAD4-2|WDR41;ENSG00000164253|ENST00000296679|WDR41;ENST00000507239.5_1_5:76754877-76788045:-|nuORF;ENST00000507452.5_1_5:76747118-76788033:-|nuORF	nc|ENSG00000164253|Q9HAD4-2|WDR41	nc|ENSG00000164253|Q9HAD4-2|WDR41	MULTI-MSMS	OvCa9_classI_Rep3	3	645.3273315429688	2	645.327859	1288.64116	-0.50398	-0.00032523	-1.7265	-0.0011142	-2.2305	-0.0014394	645.3266872760835	99.389	1.4299	97.704	97.009	98.438	-1.685					95	27	5	0	0	0	0.63561	2	6701	6679;6701		41.427	2.673	1	2398300			21516	6437	17567	17590	23877;23878	23878					0.00838979212517188
IVWDGDTTRQV	11	Unmodified	_IVWDGDTTRQV_					0	0	0		nc|ENSG00000164253|Q9HAD4-2|WDR41;ENSG00000164253|ENST00000296679|WDR41;ENST00000507239.5_1_5:76754877-76788045:-|nuORF;ENST00000507452.5_1_5:76747118-76788033:-|nuORF	nc|ENSG00000164253|Q9HAD4-2|WDR41	nc|ENSG00000164253|Q9HAD4-2|WDR41	MULTI-MSMS	OvCa9_classI_Rep4_	4	645.3267822265625	2	645.327859	1288.64116	-0.5958	-0.00038449	-1.6849	-0.0010873	-2.2807	-0.0014718	645.3267068965904	99.968	2.6534	97.643	97.263	99.917	-2.3253					142	52	6	0	0	0	0.60323	1	8924	8924		44.377	10.456	1	2886900			21517	6437	17567	17590	23879	23879					0.00838979212517188
IVWRSKVK	8	Unmodified	_IVWRSKVK_					0	0	0		ENST00000216281.12_1_14:102547440-102547575:-|nuORF	ENST00000216281.12_1_14:102547440-102547575:-|nuORF	ENST00000216281.12_1_14:102547440-102547575:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.30316162109375	2	508.324194	1014.63383	-0.73484	-0.00037354	-0.77171	-0.00039228	-1.5065	-0.00076581	508.323320719941	88.524	0.68597	86.393	86.112	86.798	-2.1309					21	13	2	0	0	0	0.028476	1	5430	5430		57.811	0	1	32655			21518	9672	17568	17591	23880	23880					0.1271033619341324
IVYASLNH	8	Unmodified	_IVYASLNH_					0	0	0		nc|ENSG00000186265|Q7Z6A9-2|BTLA;ENSG00000186265|ENST00000334529|BTLA	nc|ENSG00000186265|Q7Z6A9-2|BTLA	nc|ENSG00000186265|Q7Z6A9-2|BTLA	MULTI-MSMS	OvCa99_classI_Rep5	1	458.7456359863281	2	458.747985	915.481417	-0.32748	-0.00015023	-4.454	-0.0020433	-4.7815	-0.0021935	458.74597660143047	35.925	0.87142	35.925	35.661	36.532	0					25	18	2	0	0	0	0.65582	1	1848	1848		52.299	8.1824	1	461280			21519	8326	17569	17592	23881	23881					0.02029515725996589
IVYIAERHN	9	Unmodified	_IVYIAERHN_					0	0	0		ENSG00000189362|ENST00000409150|NEMP2;nc|ENSG00000189362|A6NFY4-2|NEMP2	ENSG00000189362|ENST00000409150|NEMP2	ENSG00000189362|ENST00000409150|NEMP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.3253784179688	2	557.803823	1113.59309	1.2067	0.00067312	3.1307	0.0017463	4.3375	0.0024195	557.8057271351695	124.12	0.59214	124.12	123.87	124.47	0					20	12	2	0	0	0	0.027402	1	14323	14323		76.774	30.802	1	369170			21520	8553	17570	17593	23882	23882					0.040839500831452824
IVYIKGKPTG	10	Unmodified	_IVYIKGKPTG_					0	0	0			REV__nc|ENSG00000105339|A2RUS2-2|DENND3	REV__nc|ENSG00000105339|A2RUS2-2|DENND3	MULTI-MSMS	OvCa9_classI_Rep3	3	538.3270874023438	2	538.329142	1074.64373	-5.6218	-0.0030264	1.9414	0.0010451	-3.6804	-0.0019813	538.3300395836094	158.87	1.4268	157.61	157.3	158.73	-1.267					79	27	5	0	0	0	0.78463	1	13738	13738		20.947	1.587	1	528870	+		21521	17712	17571	17594	23883	23883					0.10939479408125408
IVYISKSIVN	10	Unmodified	_IVYISKSIVN_					0	0	0		tr|A0A7D6VNH0|A0A7D6VNH0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17840PE=4SV=1	tr|A0A7D6VNH0|A0A7D6VNH0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17840PE=4SV=1	tr|A0A7D6VNH0|A0A7D6VNH0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17840PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	568.3106689453125	2	568.339707	1134.66486	0.53339	0.00030315	0.81625	0.00046391	1.3496	0.00076706	568.3404235897774	87.197	0.24822	85.766	85.642	85.891	-1.4311					6	4	2	0	0	0	0.027056	1	7587	7587		27.882	3.6795	1	6698.4			21522	34704	17572	17595	23884	23884					0.10291444716995102
IVYLEIDNRQ	10	Unmodified	_IVYLEIDNRQ_					0	0	0		ENSG00000148400|ENST00000651671|NOTCH1;ENST00000494783.1_1_9:139397150-139399267:-|nuORF	ENSG00000148400|ENST00000651671|NOTCH1	ENSG00000148400|ENST00000651671|NOTCH1	MULTI-SECPEP	OvCa9_classI_Rep3	3	631.8612670898438	2	631.840602	1261.66665	-0.64559	-0.00040791	-0.043424	-2.7437E-05	-0.68902	-0.00043535	631.8404454476988	91.753	0.65616	89.729	89.433	90.089	-2.0241					26	12	3	0	0	0	0.026956	1	5773	5773		34.173	8.1092	1	80161			21523	5409	17573	17596	23885	23885					0.046284537349492894
IVYMAPIKA	9	Unmodified	_IVYMAPIKA_					0	0	0		ENSG00000162669|ENST00000370425|HFM1;HFM1|p.F1400Lfs*25|1|0.44|ENSG00000162669|chr1:91262279-91262279|A/-|frameshift_variant;ENST00000481900.5_1_1:91844026-91850765:-|nuORF	ENSG00000162669|ENST00000370425|HFM1	ENSG00000162669|ENST00000370425|HFM1	MULTI-SECPEP	OvCa9_classI_Rep2	2	503.2760009765625	2	503.293714	1004.57287	-0.67394	-0.00033919	1.9725	0.00099277	1.2986	0.00065357	503.29509301461337	83.261	0.46107	81.662	81.46	81.921	-1.5988					14	9	2	0	0	0	0.027462	1	7120	7120		31.955	0	1	21251			21524	6214	17574	17597	23886	23886					0.07077063098961389
IVYSGFTKDSA	11	Unmodified	_IVYSGFTKDSA_					0	0	0		tr|A0A553SH72|A0A553SH72_NIACIArabinanaseOS=NialliacirculansOX=1397GN=CEQ21_12325PE=3SV=1	tr|A0A553SH72|A0A553SH72_NIACIArabinanaseOS=NialliacirculansOX=1397GN=CEQ21_12325PE=3SV=1	tr|A0A553SH72|A0A553SH72_NIACIArabinanaseOS=NialliacirculansOX=1397GN=CEQ21_12325PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	594.8233032226562	2	594.300778	1186.587	-0.40304	-0.00023953	-3.573	-0.0021234	-3.976	-0.0023629	594.298252936564	87.475	0.50471	84.848	84.499	85.004	-2.6269					12	9	2	0	0	0	0.026002	1	7411	7411		33.922	11.962	1	13880			21525	33244	17575	17598	23887	23887					0.0011738706098185503
IVYSGFTKDSA	11	Unmodified	_IVYSGFTKDSA_					0	0	0		tr|A0A553SH72|A0A553SH72_NIACIArabinanaseOS=NialliacirculansOX=1397GN=CEQ21_12325PE=3SV=1	tr|A0A553SH72|A0A553SH72_NIACIArabinanaseOS=NialliacirculansOX=1397GN=CEQ21_12325PE=3SV=1	tr|A0A553SH72|A0A553SH72_NIACIArabinanaseOS=NialliacirculansOX=1397GN=CEQ21_12325PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	594.300778	1186.587	-0.74802	-0.00044455	-2.4449	-0.001453	-3.193	-0.0018976	594.2999010631519	87.141	0.40462	84.964	84.734	85.138	-2.1768	0.058278	0.00057308	NaN	38.754	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11554			21526	33244	17575	17598							0.0011738706098185503
IVYTWKQP	8	Unmodified	_IVYTWKQP_					0	0	0		ENST00000415336.1_1_1:55352709-55353471:+|nuORF	ENST00000415336.1_1_1:55352709-55353471:+|nuORF	ENST00000415336.1_1_1:55352709-55353471:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.7717895507812	2	517.78711	1033.55967	1.0655	0.00055168	0.63319	0.00032786	1.6986	0.00087954	517.7892986785049	111.24	0.2234	111.24	111.16	111.38	0					6	4	2	0	0	0	0.028476	1	12652	12652		31.955	1.4512	1	60238			21527	11587	17576	17599	23888	23888					0.04422948311253094
IVYTWKQP	8	Unmodified	_IVYTWKQP_					0	0	0		ENST00000415336.1_1_1:55352709-55353471:+|nuORF	ENST00000415336.1_1_1:55352709-55353471:+|nuORF	ENST00000415336.1_1_1:55352709-55353471:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	517.78711	1033.55967	0.58154	0.00030111	-5.128	-0.0026552	-4.5464	-0.0023541	517.7839478982655	111.61	0.44241	111.48	111.32	111.77	-0.13961	0.11814	-0.0043015	NaN	40.573	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13364			21528	11587	17576	17599							0.04422948311253094
IWCSFVVI	8	Unmodified	_IWCSFVVI_					0	0	0			REV__L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|276|3|anti-sense	REV__L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|276|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	483.7574157714844	2	483.759507	965.50446	-0.55004	-0.00026609	-2.5971	-0.0012564	-3.1471	-0.0015224	483.7581117979979	133.25	1.079	132.13	131.88	132.96	-1.1249					46	21	3	0	0	0	0.73626	1	10703	10703		33.516	0.022601	1	117690	+		21529	28602	17577	17600	23889	23889					0.020328185191146986
IWGMVTFTI	9	Unmodified	_IWGMVTFTI_					0	0	0			REV__nc|ENSG00000164325|Q8WUU8-2|TMEM174	REV__nc|ENSG00000164325|Q8WUU8-2|TMEM174	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.8748168945312	2	534.283346	1066.55214	1.9919	0.0010643	-2.989	-0.001597	-0.99709	-0.00053273	534.2816095999027	117.61	0.65201	117.61	117.37	118.02	0					15	13	2	0	0	0	0.027462	1	13511	13511		31.955	11.008	1	47123	+		21530	20976	17578	17601	23890	23890					0.02152472719308207
IWHILAVVML	10	Unmodified	_IWHILAVVML_					0	0	0		ENST00000342820.10_1_4:79841695-79843397:-|nuORF;ENST00000512760.5_1_4:79841695-79860421:-|nuORF;ENSG00000163291|ENST00000512733|PAQR3	ENST00000342820.10_1_4:79841695-79843397:-|nuORF	ENST00000342820.10_1_4:79841695-79843397:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8558959960938	2	597.857012	1193.69947	-0.38237	-0.0002286	-0.70561	-0.00042185	-1.088	-0.00065045	597.8564103488146	145.14	4.0194	143.71	141.51	145.53	-1.4357					229	77	4	0	0	0	0.73286	1	14334	14334		26.796	2.2769	1	217250			21531	6284	17579	17602	23891	23891					0.11036989324111346
IWIILDNKRSL	11	Unmodified	_IWIILDNKRSL_					0	0	0			REV__ENSG00000186871|ENST00000334463|ERCC6L	REV__ENSG00000186871|ENST00000334463|ERCC6L	MULTI-MSMS	OvCa9_classI_Rep2	2	457.60882568359375	3	457.61	1369.80817	-3.7462	-0.0017143	-0.70205	-0.00032127	-4.4483	-0.0020356	457.60971240856696	157.06	2.9403	156.83	155.39	158.33	-0.22696					220	89	3	0	0	0	0.72516	1	15971	15971		13.508	0.55046	1	46638	+		21532	22617	17580	17603	23892	23892					0.13805871828071759
IWILAAPPE	9	Unmodified	_IWILAAPPE_					0	0	0		ENSG00000107611|ENST00000377833|CUBN;CUBN|p.N2467Tfs*26|1|0.51|ENSG00000107611|chr10:16913949-16913949|A/-|frameshift_variant;CUBN|p.R2817Mfs*39|1|0.03|ENSG00000107611|chr10:16899144-16899145|-/CATTCCCA|frameshift_variant	ENSG00000107611|ENST00000377833|CUBN	ENSG00000107611|ENST00000377833|CUBN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.83465576171875	2	505.289485	1008.56442	-2.0342	-0.0010279	-2.4194	-0.0012225	-4.4536	-0.0022504	505.2881719797683	88.602	0.75061	85.999	85.781	86.532	-2.6027					21	14	2	0	0	0	0.027433	1	7618	7618		47.916	10.756	1	33010			21533	2605	17581	17604	23893	23893					0.06047832453987212
IWILAAPPE	9	Unmodified	_IWILAAPPE_					0	0	0		ENSG00000107611|ENST00000377833|CUBN;CUBN|p.N2467Tfs*26|1|0.51|ENSG00000107611|chr10:16913949-16913949|A/-|frameshift_variant;CUBN|p.R2817Mfs*39|1|0.03|ENSG00000107611|chr10:16899144-16899145|-/CATTCCCA|frameshift_variant	ENSG00000107611|ENST00000377833|CUBN	ENSG00000107611|ENST00000377833|CUBN	MULTI-MATCH	OvCa9_classI_Rep3	3		2	505.289485	1008.56442	-1.0199	-0.00051536	-2.516	-0.0012713	-3.5359	-0.0017867	505.28764948485235	88.104	0.65839	85.973	85.803	86.461	-2.1309	-0.012869	-5.9271E-05	NaN	47.916	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44299			21534	2605	17581	17604							0.06047832453987212
IWISKLPHF	9	Unmodified	_IWISKLPHF_					0	0	0		nc|ENSG00000196116|Q8NHU6-2|TDRD7;TDRD7|p.Q1006Dfs*30|1|0.14|ENSG00000196116|chr9:97487271-97487272|-/GATT|frameshift_variant;ENSG00000196116|ENST00000355295|TDRD7	nc|ENSG00000196116|Q8NHU6-2|TDRD7	nc|ENSG00000196116|Q8NHU6-2|TDRD7	MULTI-MSMS	OvCa99_classI_Rep5	1	570.8331298828125	2	570.831852	1139.64915	1.2448	0.00071056	0.52357	0.00029887	1.7683	0.0010094	570.8319911567108	109.35	1.6949	109.35	109.02	110.71	0					97	37	4	0	0	0	0.035142	1	12371	12371		131.03	56.776	1	3190100			21535	8563	17582	17605	23894	23894					0.0849120299058086
IWKERNFKRKY	11	Unmodified	_IWKERNFKRKY_					0	0	0		ENST00000267549.4_1_14:88471482-88476993:+|nuORF	ENST00000267549.4_1_14:88471482-88476993:+|nuORF	ENST00000267549.4_1_14:88471482-88476993:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	523.3004150390625	3	523.300048	1566.87832	-0.75455	-0.00039485	0.8977	0.00046977	0.14315	7.4912E-05	523.3005469972669	23.813	0.48979	23.813	23.647	24.137	0					22	9	4	0	0	0	0.72568	1	382	382		6.6596	0.33873	1	141080			21536	9968	17583	17606	23895	23895					0.11755170216542865
IWKGYLLL	8	Unmodified	_IWKGYLLL_					0	0	0		ENST00000524260.1_1_8:93972764-93977317:-|nuORF	ENST00000524260.1_1_8:93972764-93977317:-|nuORF	ENST00000524260.1_1_8:93972764-93977317:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.3081359863281	2	503.310221	1004.60589	0.19253	9.6905E-05	-4.2727	-0.0021505	-4.0802	-0.0020536	503.30784166895245	110.91	1.0524	109.31	109.02	110.07	-1.6011					37	19	2	0	0	0	0.68312	1	10217	10217		46.766	2.6496	1	108770			21537	13165	17584	17607	23896	23896					0.10377013213337705
IWKGYLLL	8	Unmodified	_IWKGYLLL_					0	0	0		ENST00000524260.1_1_8:93972764-93977317:-|nuORF	ENST00000524260.1_1_8:93972764-93977317:-|nuORF	ENST00000524260.1_1_8:93972764-93977317:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	503.310221	1004.60589	0.10234	5.1508E-05	-4.8478	-0.0024399	-4.7454	-0.0023884	503.3073450633286	110.39	1.9793	109.25	108.87	110.85	-1.1444	-0.028169	-0.00035133	NaN	46.766	52	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64408			21538	13165	17584	17607							0.10377013213337705
IWKIITVL	8	Unmodified	_IWKIITVL_					0	0	0			REV__tr|A0A553SIP8|A0A553SIP8_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_15265PE=4SV=1	REV__tr|A0A553SIP8|A0A553SIP8_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_15265PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	493.32373046875	2	493.325871	984.637189	-0.72862	-0.00035945	-3.5931	-0.0017726	-4.3217	-0.002132	493.32396108529844	115.77	1.6299	114.73	114.45	116.08	-1.0414					67	32	3	0	0	0	0.64026	2	8627	8627;8648		55.504	6.0627	1	204450	+		21539	29915	17585	17608	23897;23898	23897					0.14425586247421052
IWKIPFYW	8	Unmodified	_IWKIPFYW_					0	0	0		tr|A0A553SR04|A0A553SR04_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_00115PE=4SV=1	tr|A0A553SR04|A0A553SR04_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_00115PE=4SV=1	tr|A0A553SR04|A0A553SR04_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_00115PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	577.3687133789062	2	576.81567	1151.61679	0.028669	1.6537E-05	0.97774	0.00056398	1.0064	0.00058051	576.8162757495229	126.07	0.73832	125.84	125.6	126.34	-0.2359					22	14	2	0	0	0	0.028476	1	12274	12274		37.028	4.2161	1	26094			21540	34214	17586	17609	23899	23899					0.04704415587616495
IWKRDKWRYKL	11	Unmodified	_IWKRDKWRYKL_					0	0	0			REV__tr|A0A7D6VVN3|A0A7D6VVN3_9CLOT1,4-alpha-glucanbranchingenzymeGlgBOS=ClostridiumintestinaleOX=36845GN=glgBPE=3SV=1	REV__tr|A0A7D6VVN3|A0A7D6VVN3_9CLOT1,4-alpha-glucanbranchingenzymeGlgBOS=ClostridiumintestinaleOX=36845GN=glgBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.2569580078125	3	531.312177	1590.9147	-0.0056651	-3.0099E-06	0.16828	8.9408E-05	0.16261	8.6398E-05	531.3125037819085	56.75	0.72376	56.75	56.498	57.221	0					25	16	2	0	0	0	0.026497	1	4741	4741		6.001	1.1149	1	460770	+		21541	31726	17587	17610	23900	23900					0.1428804711324574
IWKRDKWRYKL	11	Unmodified	_IWKRDKWRYKL_					0	0	0			REV__tr|A0A7D6VVN3|A0A7D6VVN3_9CLOT1,4-alpha-glucanbranchingenzymeGlgBOS=ClostridiumintestinaleOX=36845GN=glgBPE=3SV=1	REV__tr|A0A7D6VVN3|A0A7D6VVN3_9CLOT1,4-alpha-glucanbranchingenzymeGlgBOS=ClostridiumintestinaleOX=36845GN=glgBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.276611328125	3	531.312177	1590.9147	-0.30547	-0.0001623	0.38026	0.00020204	0.074791	3.9737E-05	531.3124422867403	56.003	1.0611	56.003	55.52	56.581	0					43	25	2	0	0	0	0.026435	1	4621	4621		14.086	11.06	1	647570	+		21542	31726	17587	17610	23901	23901					0.1428804711324574
IWLSNLIVI	9	Unmodified	_IWLSNLIVI_					0	0	0			REV__tr|A0A553SGK4|A0A553SGK4_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_10985PE=3SV=1	REV__tr|A0A553SGK4|A0A553SGK4_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_10985PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.8327026367188	2	535.83406	1069.65357	-1.841	-0.00098648	-1.8844	-0.0010097	-3.7254	-0.0019962	535.8326533371475	118.18	1.21	116.83	116.52	117.73	-1.3444					61	22	5	0	0	0	0.37135	1	11076	11076		54.776	13.998	1	137870	+		21543	29712	17588	17611	23902	23902					0.12152667413511153
IWMGIYTYD	9	Unmodified	_IWMGIYTYD_					0	0	0			REV__tr|A0A7D6VSL6|A0A7D6VSL6_9CLOTM56familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07335PE=4SV=1	REV__tr|A0A7D6VSL6|A0A7D6VSL6_9CLOTM56familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07335PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	580.310302734375	2	581.267893	1160.52123	-1.83	-0.0010637	-0.83994	-0.00048823	-2.67	-0.001552	581.2670519753308	106.87	0.42232	104.99	104.75	105.17	-1.8785					12	7	2	0	0	0	0.027462	1	9726	9726		25.45	18.715	1	14796	+		21544	31517	17589	17612	23903	23903					-0.05260725385596743
IWMGIYTYD	9	Unmodified	_IWMGIYTYD_					0	0	0			REV__tr|A0A7D6VSL6|A0A7D6VSL6_9CLOTM56familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07335PE=4SV=1	REV__tr|A0A7D6VSL6|A0A7D6VSL6_9CLOTM56familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07335PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	581.267893	1160.52123	-0.65401	-0.00038015	-1.8219	-0.001059	-2.476	-0.0014392	581.2659527518532	105.58	0.39832	105.14	104.9	105.3	-0.43642	0.12023	-0.00017426	NaN	25.45	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10521	+		21545	31517	17589	17612							-0.05260725385596743
IWMGIYTYD	9	Unmodified	_IWMGIYTYD_					0	0	0			REV__tr|A0A7D6VSL6|A0A7D6VSL6_9CLOTM56familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07335PE=4SV=1	REV__tr|A0A7D6VSL6|A0A7D6VSL6_9CLOTM56familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07335PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	581.267893	1160.52123	-0.61917	-0.0003599	-1.9908	-0.0011572	-2.61	-0.0015171	581.2667169724418	106.23	0.62617	104.93	104.72	105.34	-1.2978	-0.087872	-0.0003706	NaN	25.45	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11440	+		21546	31517	17589	17612							-0.05260725385596743
IWNVGPDPI	9	Unmodified	_IWNVGPDPI_					0	0	0			REV__ENST00000448644.2_1_6:133055390-133055831:-|nuORF	REV__ENST00000448644.2_1_6:133055390-133055831:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.3185729980469	2	505.768917	1009.52328	-0.84517	-0.00042746	-3.225	-0.0016311	-4.0702	-0.0020586	505.76718101301793	58.296	1.8889	55.505	55.023	56.912	-2.791					70	36	3	0	0	0	0.027343	1	4287	4287		79.451	10.664	1	250680	+		21547	25935	17590	17613	23904	23904					0.018900714145274833
IWPGGVLPKF	10	Unmodified	_IWPGGVLPKF_					0	0	0		ENSG00000120451|ENST00000265909|SNX19;ENST00000580193.1_1_18:14630000-14630792:-|nuORF;ENST00000444901.1_1_21:14899938-14900730:+|nuORF	ENSG00000120451|ENST00000265909|SNX19	ENSG00000120451|ENST00000265909|SNX19	MULTI-MSMS	OvCa99_classI_Rep5	1	557.3268432617188	2	557.326402	1112.63825	2.0884	0.0011639	-0.17031	-9.4918E-05	1.9181	0.001069	557.3261373762572	127.93	2.5063	127.93	127.36	129.87	0					116	53	4	0	0	0	0.35697	1	14836	14836		73.975	28.002	1	963050			21548	3431	17591	17614	23905	23905					0.0864380061632346
IWPTKLMKKW	10	Unmodified	_IWPTKLMKKW_					0	0	0			REV__ENST00000448120.6_1_12:3031490-3039431:+|nuORF	REV__ENST00000448120.6_1_12:3031490-3039431:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	444.26141357421875	3	444.261655	1329.76313	1.0353	0.00045994	-1.1553	-0.00051326	-0.12003	-5.3324E-05	444.261120650002	68.217	1.7987	65.402	64.962	66.761	-2.8144					71	35	4	0	0	0	0.72142	1	2955	2955		28.081	4.7036	1	103760	+		21549	25930	17592	17615	23906	23906					0.11144349761184458
IWPTVLEPWK	10	Unmodified	_IWPTVLEPWK_					0	0	0		ENST00000514640.5_1_5:76383363-76396087:+|nuORF;ENST00000502433.5_1_5:76383363-76414170:+|nuORF;ENST00000512213.5_1_5:76383363-76396087:+|nuORF	ENST00000514640.5_1_5:76383363-76396087:+|nuORF	ENST00000514640.5_1_5:76383363-76396087:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	634.8588256835938	2	634.855524	1267.69649	0.91744	0.00058244	3.4397	0.0021837	4.3571	0.0027661	634.8576710032044	97.52	2.7566	95.141	94.708	97.465	-2.3786					143	53	5	0	0	0	0.29438	1	8636	8636		90.37	20.742	1	2559000			21550	12848	17593	17616	23907	23907					0.07335437470919715
IWPTVLEPWK	10	Unmodified	_IWPTVLEPWK_					0	0	0		ENST00000514640.5_1_5:76383363-76396087:+|nuORF;ENST00000502433.5_1_5:76383363-76414170:+|nuORF;ENST00000512213.5_1_5:76383363-76396087:+|nuORF	ENST00000514640.5_1_5:76383363-76396087:+|nuORF	ENST00000514640.5_1_5:76383363-76396087:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	634.855524	1267.69649	-0.44072	-0.00027979	4.7849	0.0030377	4.3442	0.0027579	634.8585186686879	97.001	2.7047	95.173	94.827	97.532	-1.8286	0.022078	0.00077862	NaN	90.37	162	52	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2573100			21551	12848	17593	17616							0.07335437470919715
IWQSRAAFR	9	Unmodified	_IWQSRAAFR_					0	0	0			REV__LRCH1|p.E457Vfs*53|1|0.03|ENSG00000136141|chr13:46701176-46701177|-/T|frameshift_variant	REV__LRCH1|p.E457Vfs*53|1|0.03|ENSG00000136141|chr13:46701176-46701177|-/T|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	567.8134765625	2	567.811982	1133.60941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.126	1	96.126	95.626	96.626	0								0	0	0	0.16648	1	10518	10518		60.972	5.4677	1		+		21552	28626	17594	17617	23908	23908					0.04795076039886226
IWQWLRQPD	9	Unmodified	_IWQWLRQPD_					0	0	0			REV__ENSG00000154957|ENST00000580306|ZNF18	REV__ENSG00000154957|ENST00000580306|ZNF18	MULTI-SECPEP	OvCa99_classI_Rep5	1	621.2899169921875	2	621.324922	1240.63529	1.2493	0.0007762	-0.045786	-2.8448E-05	1.2035	0.00074776	621.3247904682584	107.04	0.71745	107.04	106.76	107.48	0					21	16	2	0	0	0	0.027446	1	12107	12107		27.882	0	1	868860	+		21553	20407	17595	17618	23909	23909					0.024599254914846824
IWRCLGGVV	9	Unmodified	_IWRCLGGVV_					0	0	0		ENST00000360121.4_1_16:29677113-29677461:+|nuORF	ENST00000360121.4_1_16:29677113-29677461:+|nuORF	ENST00000360121.4_1_16:29677113-29677461:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	501.78216552734375	2	501.781305	1001.54806	-0.54907	-0.00027551	2.185	0.0010964	1.636	0.0008209	501.78238333117724	42.548	0.77069	42.548	42.156	42.926	0					45	17	4	0	0	0	0.42057	1	2749	2749		50.025	4.0523	1	692090			21554	10768	17596	17619	23910	23910					0.04734428016251968
IWRWRQENQRL	11	Unmodified	_IWRWRQENQRL_					0	0	0			REV__ENSG00000144481|ENST00000324695|TRPM8	REV__ENSG00000144481|ENST00000324695|TRPM8	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.8310546875	3	528.955052	1583.84333	-0.51618	-0.00027303	3.6944	0.0019542	3.1782	0.0016812	529.2912849658912	55.66	0.6927	55.66	55.401	56.094	0					48	16	4	0	0	0	0.026488	1	4576	4576		10.104	0.45776	1	1429100	+		21555	19914	17597	17620	23911	23911					0.07475927408609095
IWSEGITENLL	11	Unmodified	_IWSEGITENLL_					0	0	0			REV__tr|A0A7D6ZUQ2|A0A7D6ZUQ2_9CLOTAlpha-1,4glucanphosphorylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01110PE=3SV=1	REV__tr|A0A7D6ZUQ2|A0A7D6ZUQ2_9CLOTAlpha-1,4glucanphosphorylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01110PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	637.83740234375	2	637.834985	1273.65542	1.5625	0.00099659	0.20291	0.00012943	1.7654	0.001126	637.835077784594	143.74	2.5604	143.74	143.27	145.83	0					129	52	6	0	0	0	0.39237	1	16781	16781		61.691	6.9689	1	4616100	+		21556	32226	17598	17621	23912	23912					0.02953631640821186
IWSGTVLEV	9	Unmodified	_IWSGTVLEV_					0	0	0			REV__ENSG00000174957|ENST00000312298|OR5J2	REV__ENSG00000174957|ENST00000312298|OR5J2	MULTI-MSMS	OvCa9_classI_Rep2	2	502.2738342285156	2	502.276575	1002.5386	-0.54437	-0.00027343	-4.2497	-0.0021345	-4.7941	-0.002408	502.274328790532	78.652	2.173	76.912	76.301	78.474	-1.7398					94	42	4	0	0	0	0.27546	2	6588	6588;6599		65.803	3.6958	1	299450	+		21557	21864	17599	17622	23913;23914	23913					0.03742938211712499
IWSPIDIASKI	11	Unmodified	_IWSPIDIASKI_					0	0	0		ENST00000298556.7_1_X:133634108-133634198:+|nuORF	ENST00000298556.7_1_X:133634108-133634198:+|nuORF	ENST00000298556.7_1_X:133634108-133634198:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	621.8557739257812	2	621.858264	1241.70197	-0.53094	-0.00033017	-3.0985	-0.0019268	-3.6295	-0.002257	621.8562878187912	70.339	1.2237	67.768	67.412	68.635	-2.5707					81	23	5	0	0	0	0.1228	1	5620	5620		85.161	0	1	789100			21558	10156	17600	17623	23915	23915					0.09079116262751086
IWTKFYKP	8	Unmodified	_IWTKFYKP_					0	0	0			REV__tr|A0A7D6W2Q6|A0A7D6W2Q6_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_07045PE=3SV=1	REV__tr|A0A7D6W2Q6|A0A7D6W2Q6_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_07045PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	541.8027954101562	2	541.805303	1081.59605	-0.30564	-0.0001656	-1.4308	-0.00077524	-1.7365	-0.00094084	541.8044569531069	79.417	1.973	77.678	76.999	78.972	-1.7398					115	38	4	0	0	0	0.71369	1	6637	6637		40.573	3.4135	1	314360	+		21559	31905	17601	17624	23916	23916					0.058518252079238664
IWVFDIII	8	Unmodified	_IWVFDIII_					0	0	0			REV__ENSG00000168447|ENST00000343070|SCNN1B	REV__ENSG00000168447|ENST00000343070|SCNN1B	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8043212890625	2	509.802229	1017.5899	-0.41042	-0.00020923	3.4351	0.0017512	3.0247	0.001542	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.74679	1	13643	13643		28.254	1.5614	1	150140	+		21560	21376	17602	17625	23917	23917					0.08181306976428004
IWVFDIII	8	Unmodified	_IWVFDIII_					0	0	0			REV__ENSG00000168447|ENST00000343070|SCNN1B	REV__ENSG00000168447|ENST00000343070|SCNN1B	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.8035583496094	2	509.802229	1017.5899	2.0238	0.0010317	0.96983	0.00049442	2.9936	0.0015261	509.80258654056354	136.53	4.9049	134.99	133.61	138.51	-1.5437					290	101	5	0	0	0	0.73288	1	13349	13349		35.201	3.2459	1	173450	+		21561	21376	17602	17625	23918	23918					0.08181306976428004
IYADNQVMHF	10	Unmodified	_IYADNQVMHF_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF;POLE|p.N1811K|1|0.06|ENSG00000177084|chr12:132639244-132639244|G/T|missense_variant	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-MSMS	OvCa99_classI_Rep5	1	619.2896728515625	2	619.287148	1236.55974	1.8483	0.0011447	0.47124	0.00029183	2.3196	0.0014365	619.2872145587044	95.579	0.92499	95.579	95.328	96.253	0					39	21	3	0	0	0	0.22663	1	10454	10454		90.37	35.647	1	1723900			21562	7656	17603	17626	23919	23919					-0.04907419751089037
IYAKLFNWI	9	Unmodified	_IYAKLFNWI_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MSMS	OvCa99_classI_Rep5	1	584.3336791992188	2	584.331685	1166.64882	0.96024	0.0005611	1.1743	0.00068617	2.1345	0.0012473	584.3324420597257	138.79	1.0602	138.79	138.55	139.61	0					43	21	4	0	0	0	0.11171	2	16194	16194;16219		94.006	17.16	1	387870			21563	8720	17604	17627	23920;23921	23920					0.07215783270748943
IYALTGDIV	9	Unmodified	_IYALTGDIV_					0	0	0			REV__tr|A0A7D6ZI17|A0A7D6ZI17_9CLOTDNAtopoisomerase(ATP-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=HZF06_05265PE=4SV=1	REV__tr|A0A7D6ZI17|A0A7D6ZI17_9CLOTDNAtopoisomerase(ATP-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=HZF06_05265PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	482.77191162109375	2	482.771126	963.527698	2.638	0.0012736	0.12952	6.253E-05	2.7675	0.0013361	482.77111251617384	86.646	0.78458	86.646	86.431	87.216	0					41	18	4	0	0	0	0.19716	1	9139	9139		76.847	8.3619	1	1930500	+		21564	32044	17605	17628	23922	23922					0.044475358374370444
IYAMKVLRKVS	11	Unmodified	_IYAMKVLRKVS_					0	0	0		ENST00000525088.5_1_11:67196543-67197168:+|nuORF	ENST00000525088.5_1_11:67196543-67197168:+|nuORF	ENST00000525088.5_1_11:67196543-67197168:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.7646484375	3	436.600447	1306.77951	-0.97742	-0.00042674	1.4345	0.00062631	0.4571	0.00019957	436.6010554239364	72.781	0.67687	69.385	69.156	69.833	-3.3961					19	13	2	0	0	0	0.026189	1	5630	5630		14.694	5.4819	1	42206			21565	13181	17606	17629	23923	23923					0.1383943092730533
IYAMVATVTL	10	Unmodified	_IYAMVATVTL_					0	0	0		sp|P09723|US21_HCMVAUncharacterizedproteinHWLF2OS=Humancytomegalovirus(strainAD169)OX=10360GN=US21PE=3SV=1;sp|F5HHT6|US21_HCMVMMembraneproteinUS21OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US21PE=3SV=1	sp|P09723|US21_HCMVAUncharacterizedproteinHWLF2OS=Humancytomegalovirus(strainAD169)OX=10360GN=US21PE=3SV=1	sp|P09723|US21_HCMVAUncharacterizedproteinHWLF2OS=Humancytomegalovirus(strainAD169)OX=10360GN=US21PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.310546875	2	541.301736	1080.58892	-0.56576	-0.00030625	3.4491	0.001867	2.8833	0.0015608	541.3034118194453	67.934	0.38945	67.934	67.762	68.152	0					16	9	2	0	0	0	0.026665	1	6380	6380		34.173	0	1	697670			21566	32877	17607	17630	23924	23924					0.05184724545210884
IYAPALILN	9	Unmodified	_IYAPALILN_					0	0	0		SLC5A5|p.Q224Pfs*10|1|0.07|ENSG00000105641|chr19:17876077-17876081|CCAGA/-|frameshift_variant;ENSG00000105641|ENST00000222248|SLC5A5	SLC5A5|p.Q224Pfs*10|1|0.07|ENSG00000105641|chr19:17876077-17876081|CCAGA/-|frameshift_variant	SLC5A5|p.Q224Pfs*10|1|0.07|ENSG00000105641|chr19:17876077-17876081|CCAGA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	494.2973327636719	2	494.29731	986.580068	0.59231	0.00029278	-0.68142	-0.00033682	-0.089108	-4.4046E-05	494.29678378725345	123.89	1.2329	123.66	123.34	124.57	-0.23193					56	24	3	0	0	0	0.58665	1	12049	12049		33.516	3.0119	1	136770			21567	2478	17608	17631	23925	23925					0.08624118971044936
IYAPKLQEF	9	Unmodified	_IYAPKLQEF_					0	0	0		ENSG00000175305|ENST00000308108|CCNE2	ENSG00000175305|ENST00000308108|CCNE2	ENSG00000175305|ENST00000308108|CCNE2	MULTI-MSMS	OvCa99_classI_Rep5	1	554.8082885742188	2	554.8055	1107.59645	3.6496	0.0020248	-1.8415	-0.0010217	1.8081	0.0010031	554.8043850055058	97.585	0.8126	97.585	97.309	98.121	0					50	18	4	0	0	0	0.16562	1	10714	10714		82.241	5.4664	1	5522300			21568	7533	17609	17632	23926	23926					0.04695200137143729
IYAPPLPSL	9	Unmodified	_IYAPPLPSL_					0	0	0		ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	ENSG00000121057|ENST00000337714|AKAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	485.7854309082031	2	485.784036	969.553519	1.9033	0.00092462	2.2716	0.0011035	4.1749	0.0020281	485.78399112063573	137.66	2.062	137.66	137.11	139.17	0					86	43	4	0	0	0	0.018995	2	16051	16051;16075		148.21	59.563	1	656240			21569	3467	17610	17633	23927;23928	23927					0.06752430079700389
IYARAANMF	9	Unmodified	_IYARAANMF_					0	0	0		ENSG00000105402|ENST00000263354|NAPA;ENST00000593785.5_1_19:48000055-48018221:-|nuORF;ENST00000594288.5_1_19:47996374-48015977:-|nuORF	ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	MULTI-MSMS	OvCa99_classI_Rep5	1	528.7699584960938	2	528.768394	1055.52224	1.4664	0.0007754	0.85113	0.00045005	2.3176	0.0012254	528.7684590102784	81.752	0.82185	81.752	81.572	82.394	0					37	19	3	0	0	0	0.098892	1	8444	8444		97.473	19.529	1	1130500			21570	2453	17611	17634	23929	23929					-0.003304662260461555
IYASVRTLL	9	Unmodified	_IYASVRTLL_					0	0	0		ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	MULTI-MSMS	OvCa99_classI_Rep5	1	518.3153686523438	2	518.313492	1034.61243	1.8067	0.00093644	0.74746	0.00038742	2.5542	0.0013239	518.3135326872607	100.45	0.45531	100.45	100.19	100.65	0					21	10	3	0	0	0	0.14855	1	11137	11137		85.161	2.9203	1	1559400			21571	3957	17612	17635	23930	23930					0.09650906374054102
IYATEAHVF	9	Unmodified	_IYATEAHVF_					0	0	0		TMEM48-MTMR12|1|fusion;TMEM48-MTMR12|2|fusion;nc|ENSG00000058804|Q9BTX1-4|NDC1;nc|ENSG00000058804|Q9BTX1-6|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1;nc|ENSG00000058804|Q9BTX1-3|NDC1	TMEM48-MTMR12|1|fusion	TMEM48-MTMR12|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	525.767822265625	2	525.766374	1049.5182	1.7511	0.00092068	1.0834	0.00056961	2.8345	0.0014903	525.7666943641002	83.889	0.67417	83.889	83.671	84.345	0					35	15	3	0	0	0	0.17908	1	8756	8756		79.939	19.645	1	872460			21572	32967	17613	17636	23931	23931					-0.004582324481134492
IYATLVFAIAI	11	Unmodified	_IYATLVFAIAI_					0	0	0		YIPF1|p.C127Y|1|0.08|ENSG00000058799|chr1:53871473-53871473|C/T|missense_variant	YIPF1|p.C127Y|1|0.08|ENSG00000058799|chr1:53871473-53871473|C/T|missense_variant	YIPF1|p.C127Y|1|0.08|ENSG00000058799|chr1:53871473-53871473|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8567504882812	2	597.860275	1193.706	-3.1765	-0.0018991	-3.3266	-0.0019889	-6.5032	-0.003888	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.70148	1	15130	15130		29.15	1.2673	1	436470			21573	36310	17614	17637	23932	23932					0.11689205756488263
IYAWAPKPYHK	11	Unmodified	_IYAWAPKPYHK_					0	0	0		ENST00000459881.1_1_3:170784284-170789158:-|nuORF;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK	ENST00000459881.1_1_3:170784284-170789158:-|nuORF	ENST00000459881.1_1_3:170784284-170789158:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	459.2370300292969	3	458.583674	1372.72919	-0.78837	-0.00036153	-1.4229	-0.00065252	-2.2113	-0.0010141	459.2494467403311	49.681	0.3496	49.681	49.507	49.856	0					15	7	3	0	0	0	0.026113	1	3712	3712		24.232	5.7008	1	134320			21574	5729	17615	17638	23933	23933					0.05773644593773497
IYAWLHDS	8	Unmodified	_IYAWLHDS_					0	0	0		ENSG00000119973|ENST00000239032|PRLHR	ENSG00000119973|ENST00000239032|PRLHR	ENSG00000119973|ENST00000239032|PRLHR	MULTI-SECPEP	OvCa9_classI_Rep3	3	502.2830505371094	2	502.745442	1003.47633	-0.91861	-0.00046183	3.5854	0.0018025	2.6668	0.0013407	503.2482552546989	95.06	0.29735	93.165	93.014	93.311	-1.8956					6	5	2	0	0	0	0.028476	1	6170	6170		44.531	0	1	4913.8			21575	3410	17616	17639	23934	23934					-0.025267881366289657
IYCCTGPAPK	10	Unmodified	_IYCCTGPAPK_					0	0	0			REV__ENSG00000168484|ENST00000679463|SFTPC	REV__ENSG00000168484|ENST00000679463|SFTPC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.7792358398438	2	526.748813	1051.48307	-1.1545	-0.00060814	-0.41731	-0.00021982	-1.5718	-0.00082796	526.748318071943	52.568	1.1563	49.36	49.044	50.2	-3.208					48	22	4	0	0	0	0.026891	1	3217	3217		31.53	4.8369	1	107990	+		21576	21380	17617	17640	23935	23935					-0.04060934571930375
IYCHELLE	8	Unmodified	_IYCHELLE_					0	0	0		L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|115|1|anti-sense	L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|115|1|anti-sense	L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|115|1|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	510.2463684082031	2	510.24696	1018.47937	1.6589	0.00084645	-3.2636	-0.0016652	-1.6047	-0.00081877	510.2451662979428	127.25	2.2553	127.25	127.01	129.26	0					121	48	4	0	0	0	0.28613	2	14789	14789;14816		109.7	13.656	1	5144900			21577	14541	17618	17641	23936;23937	23936					-0.029132810741202775
IYCSLEEEIL	10	Unmodified	_IYCSLEEEIL_					0	0	0		GAS2L2|p.V668Wfs*42|1|0.05|ENSG00000270765|chr17:35745496-35745496|T/-|frameshift_variant;ENSG00000270765|ENST00000604641|GAS2L2	GAS2L2|p.V668Wfs*42|1|0.05|ENSG00000270765|chr17:35745496-35745496|T/-|frameshift_variant	GAS2L2|p.V668Wfs*42|1|0.05|ENSG00000270765|chr17:35745496-35745496|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	606.3002319335938	2	606.296847	1210.57914	2.0541	0.0012454	4.0274	0.0024418	6.0815	0.0036872	606.2991517937758	129.14	0.88528	129.14	128.7	129.59	0					57	18	5	0	0	0	0.46756	1	14981	14981		58.782	4.0056	1	1342300			21578	9546	17619	17642	23938	23938					-0.017725082508377454
IYDIGIQTNI	10	Unmodified	_IYDIGIQTNI_					0	0	0		nc|ENSG00000137968|Q8NCS7-5|SLC44A5;ENSG00000137968|ENST00000370859|SLC44A5;nc|ENSG00000137968|Q8NCS7|SLC44A5	nc|ENSG00000137968|Q8NCS7-5|SLC44A5	nc|ENSG00000137968|Q8NCS7-5|SLC44A5	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.3177490234375	2	575.311146	1148.60774	1.0966	0.00063088	0.7584	0.00043632	1.855	0.0010672	575.3111606493184	113.96	0.52431	113.96	113.53	114.06	0					17	11	3	0	0	0	0.026523	1	12954	12954		62.107	0	1	435910			21579	4641	17620	17643	23939	23939					0.039379774406370416
IYDRKFLL	8	Unmodified	_IYDRKFLL_					0	0	0		ENST00000532219.5_3_5:139921832-139928844:+|nuORF;ENSG00000243056|ENST00000310331|EIF4EBP3;ENSG00000148730|ENST00000373218|EIF4EBP2	ENST00000532219.5_3_5:139921832-139928844:+|nuORF	ENST00000532219.5_3_5:139921832-139928844:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	534.314208984375	2	534.316035	1066.61752	-2.3044	-0.0012313	2.8408	0.0015179	0.53632	0.00028657	534.3174208530834	118.08	1.0444	117.93	117.74	118.78	-0.14755					43	20	3	0	0	0	0.67745	1	11334	11334		47.916	7.343	1	132020			21580	9371	17621	17644	23940	23940					0.08687210236666942
IYDSVKVYF	9	Unmodified	_IYDSVKVYF_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547869.1_1_12:98994914-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	567.2989501953125	2	567.297507	1132.58046	2.2317	0.0012661	-0.35124	-0.00019926	1.8805	0.0010668	567.2971916433995	107.34	1.2215	107.34	107.02	108.24	0					91	28	5	0	0	0	0.010652	3	12106	12083;12106;12137		166.68	56.845	1	21997000			21581	1531	17622	17645	23941;23942;23943	23942					0.019474939002293468
IYDVLNTLV	9	Unmodified	_IYDVLNTLV_					0	0	0		tr|A0A553SSD4|A0A553SSD4_NIACITrmBfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02895PE=4SV=1	tr|A0A553SSD4|A0A553SSD4_NIACITrmBfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02895PE=4SV=1	tr|A0A553SSD4|A0A553SSD4_NIACITrmBfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02895PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.2985229492188	2	525.297507	1048.58046	0.30271	0.00015901	-0.68087	-0.00035766	-0.37817	-0.00019865	525.2969740324694	97.355	1.3134	94.977	94.708	96.022	-2.3786					74	25	4	0	0	0	0.13482	1	8614	8614		87.754	0.057861	1	328140			21582	34360	17623	17646	23944	23944					0.05811493900228015
IYDVLNTLV	9	Unmodified	_IYDVLNTLV_					0	0	0		tr|A0A553SSD4|A0A553SSD4_NIACITrmBfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02895PE=4SV=1	tr|A0A553SSD4|A0A553SSD4_NIACITrmBfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02895PE=4SV=1	tr|A0A553SSD4|A0A553SSD4_NIACITrmBfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02895PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	525.297507	1048.58046	0.023144	1.2157E-05	-0.31197	-0.00016388	-0.28883	-0.00015172	525.2971105641503	95.915	1.2368	94.887	94.615	95.852	-1.0281	-0.035802	-0.00032194	NaN	87.754	67	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	283670			21583	34360	17623	17646							0.05811493900228015
IYDVLNTLV	9	Unmodified	_IYDVLNTLV_					0	0	0		tr|A0A553SSD4|A0A553SSD4_NIACITrmBfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02895PE=4SV=1	tr|A0A553SSD4|A0A553SSD4_NIACITrmBfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02895PE=4SV=1	tr|A0A553SSD4|A0A553SSD4_NIACITrmBfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02895PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	525.297507	1048.58046	-1.2339	-0.00064818	0.91607	0.00048121	-0.31785	-0.00016697	525.2978198273471	96.734	1.1746	94.905	94.621	95.796	-1.8286	-0.017751	0.00096823	NaN	87.754	63	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	370000			21584	34360	17623	17646							0.05811493900228015
IYEGMILAEL	10	Unmodified	_IYEGMILAEL_					0	0	0			REV__ENSG00000171798|ENST00000304613|KNDC1	REV__ENSG00000171798|ENST00000304613|KNDC1	MSMS	OvCa99_classI_Rep5	1	576.2978515625	2	576.304475	1150.5944	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.38	1	139.38	138.88	139.88	0								0	0	0	0.14342	1	16272	16272		51.335	3.4199	1		+		21585	21646	17624	17647	23945	23945					0.025124033370275356
IYEQVMIAALD	11	Unmodified	_IYEQVMIAALD_					0	0	0		ENST00000517593.5_1_8:109455866-109468189:+|nuORF;ENSG00000104412|ENST00000220853|EMC2	ENST00000517593.5_1_8:109455866-109468189:+|nuORF	ENST00000517593.5_1_8:109455866-109468189:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	422.5750732421875	3	422.553051	1264.63732	-0.54866	-0.00023184	3.642	0.0015389	3.0933	0.0013071	422.88919336182647	37.368	0.18614	37.368	37.205	37.391	0					6	3	2	0	0	0	0.025624	1	2033	2033		45.908	17.331	1	18762			21586	2374	17625	17648	23946	23946					0.015591733944347652
IYEYYHAL	8	Unmodified	_IYEYYHAL_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.8330688476562	2	536.260925	1070.5073	-0.85551	-0.00045878	-0.13786	-7.393E-05	-0.99337	-0.00053271	536.2607768440998	93.422	0.61877	92.254	91.904	92.523	-1.168					18	11	2	0	0	0	0.028476	1	8329	8329		26.796	4.8362	1	11066			21587	2095	17626	17649	23947	23947					-0.025136348223895766
IYEYYHAL	8	Unmodified	_IYEYYHAL_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	536.260925	1070.5073	0.21313	0.00011429	-1.8151	-0.00097339	-1.602	-0.0008591	536.2596925946143	94.243	0.76614	92.348	91.795	92.561	-1.8956	0.046814	-0.0011413	NaN	26.796	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16107			21588	2095	17626	17649							-0.025136348223895766
IYFFLNFVI	9	Unmodified	_IYFFLNFVI_					0	0	0		L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|282|2|anti-sense	L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|282|2|anti-sense	L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|282|2|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	588.3272094726562	2	588.328611	1174.64267	1.356	0.00079777	-3.3659	-0.0019803	-2.0099	-0.0011825	588.3264364384218	149.33	0.53596	149.33	149.01	149.55	0					20	10	3	0	0	0	0.59983	1	17481	17481		31.955	0.32059	1	120930			21589	14748	17627	17650	23948	23948					0.062332650392363576
IYFFLSNL	8	Unmodified	_IYFFLSNL_					0	0	0		ENSG00000171054|ENST00000338616|OR13H1	ENSG00000171054|ENST00000338616|OR13H1	ENSG00000171054|ENST00000338616|OR13H1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7259216308594	2	508.776211	1015.53787	1.2583	0.00064019	0.37318	0.00018987	1.6315	0.00083005	509.27936163590084	109.43	0.66161	109.43	109.02	109.68	0					20	14	2	0	0	0	0.028476	1	12402	12402		47.657	0	1	238800			21590	7166	17628	17651	23949	23949					0.030721435626674065
IYFGRGLTF	9	Unmodified	_IYFGRGLTF_					0	0	0		tr|A0A553STK9|A0A553STK9_NIACIYhgE/Pipdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05330PE=4SV=1	tr|A0A553STK9|A0A553STK9_NIACIYhgE/Pipdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05330PE=4SV=1	tr|A0A553STK9|A0A553STK9_NIACIYhgE/Pipdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05330PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	537.2913208007812	2	537.292559	1072.57057	-0.15025	-8.0729E-05	-3.0425	-0.0016347	-3.1927	-0.0017154	537.2903636849045	58.634	0.75669	58.634	58.363	59.12	0					35	18	3	0	0	0	0.21395	1	4988	4988		73.975	16.163	1	1819100			21591	34501	17629	17652	23950	23950					0.037183506854944426
IYFGSLSID	9	Unmodified	_IYFGSLSID_					0	0	0		tr|A0A7D7A2K8|A0A7D7A2K8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17485PE=4SV=1	tr|A0A7D7A2K8|A0A7D7A2K8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17485PE=4SV=1	tr|A0A7D7A2K8|A0A7D7A2K8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17485PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	507.7619934082031	2	507.760758	1013.50696	0.78302	0.00039759	3.1816	0.0016155	3.9646	0.0020131	507.76227016858786	127.25	3.6353	126.18	123.46	127.1	-1.0715					121	69	3	0	0	0	0.22961	1	9966	9966		71.296	10.324	1	658450			21592	36083	17630	17653	23951	23951					0.0007494545775443839
IYFIPRNVI	9	Unmodified	_IYFIPRNVI_					0	0	0		ENST00000476412.5_1_1:114308604-114340019:-|nuORF;ENSG00000081019|ENST00000261441|RSBN1	ENST00000476412.5_1_1:114308604-114340019:-|nuORF	ENST00000476412.5_1_1:114308604-114340019:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	567.8391723632812	2	567.837134	1133.65972	1.6061	0.00091202	0.22358	0.00012696	1.8297	0.001039	567.8371735052933	118.98	0.70657	118.98	118.67	119.38	0					43	14	4	0	0	0	0.14739	1	13650	13650		85.359	29.855	1	720310			21593	1649	17631	17654	23952	23952					0.09823185645018384
IYFLIDRSV	9	Unmodified	_IYFLIDRSV_					0	0	0			REV__ENST00000377091.6_1_10:21827773-21845868:+|nuORF	REV__ENST00000377091.6_1_10:21827773-21845868:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.3019409179688	2	563.318774	1124.623	3.2703	0.0018422	-0.52215	-0.00029414	2.7481	0.0015481	563.3183825796962	99.111	0.65007	99.111	98.838	99.488	0					33	15	3	0	0	0	0.027462	1	10955	10955		42.474	13.325	1	401180	+		21594	25112	17632	17655	23953	23953					0.0656688902845417
IYFPKKEAVTF	11	Unmodified	_IYFPKKEAVTF_					0	0	0		ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	ENSG00000137055|ENST00000397292|PLAA	MULTI-MSMS	OvCa99_classI_Rep5	1	448.25244140625	3	448.251701	1341.73327	2.9043	0.0013019	-0.37079	-0.00016621	2.5335	0.0011357	448.2514232565857	88.904	0.75774	88.904	88.677	89.435	0					49	18	4	0	0	0	0.41331	1	9467	9467		60.167	0.048709	1	4181400			21595	4549	17633	17656	23954	23954					0.07607689296833087
IYFPYVLKI	9	Unmodified	_IYFPYVLKI_					0	0	0		ENSG00000188921|ENST00000495827|HACD4	ENSG00000188921|ENST00000495827|HACD4	ENSG00000188921|ENST00000495827|HACD4	MULTI-MSMS	OvCa99_classI_Rep5	1	578.3467407226562	2	578.344261	1154.67397	0.46303	0.00026779	1.8269	0.0010566	2.29	0.0013244	578.345182099229	141.81	1.1987	141.81	141.44	142.64	0					60	23	4	0	0	0	0.027215	3	16575	16552;16575;16601		138.48	35.706	1	915860			21596	8519	17634	17657	23955;23956;23957	23956					0.10281838073319705
IYFWKGNIYL	10	Unmodified	_IYFWKGNIYL_					0	0	0		tr|A0A553SPV0|A0A553SPV0_NIACIMagnesiumtransporterMgtEOS=NialliacirculansOX=1397GN=mgtEPE=3SV=1	tr|A0A553SPV0|A0A553SPV0_NIACIMagnesiumtransporterMgtEOS=NialliacirculansOX=1397GN=mgtEPE=3SV=1	tr|A0A553SPV0|A0A553SPV0_NIACIMagnesiumtransporterMgtEOS=NialliacirculansOX=1397GN=mgtEPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	439.57275390625	3	439.572775	1315.69649	-0.35444	-0.0001558	2.5424	0.0011176	2.188	0.00096176	439.57386515080725	63.418	1.7895	60.673	60.161	61.95	-2.7444					115	33	5	0	0	0	0.62299	2	4806	4806;4811		39.253	6.2817	1	527640			21597	34090	17635	17658	23958;23959	23958					0.05127437470969198
IYFYCTNVPE	10	Unmodified	_IYFYCTNVPE_					0	0	0			REV__chr1:103651377-103750424|201|17.3|0.0|20.72|+|1|TE_info:HERVE_a-int,HERVE_a-int_dup2,ERV1,LTR,donor,-,103648516,103651377|None,AMY1C|47	REV__chr1:103651377-103750424|201|17.3|0.0|20.72|+|1|TE_info:HERVE_a-int,HERVE_a-int_dup2,ERV1,LTR,donor,-,103648516,103651377|None,AMY1C|47	MULTI-MSMS	OvCa99_classI_Rep5	1	624.7913818359375	2	624.783907	1247.55326	0.75824	0.00047374	3.5083	0.0021919	4.2665	0.0026657	624.7859592274224	124.17	0.59225	124.17	123.92	124.51	0					17	11	2	0	0	0	0.3976	1	14327	14327		68.787	2.9837	1	184260	+		21598	15792	17636	17659	23960	23960					-0.0606135770246965
IYGERSGFGLF	11	Unmodified	_IYGERSGFGLF_					0	0	0			REV__ENST00000468303.5_1_1:24742648-24743062:-|nuORF	REV__ENST00000468303.5_1_1:24742648-24743062:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	623.3178100585938	2	623.316763	1244.61897	0.92841	0.0005787	1.0484	0.00065348	1.9768	0.0012322	623.3171026606535	115.06	1.3493	115.06	114.42	115.77	0					69	24	4	0	0	0	0.1183	1	13165	13165		93.195	22.379	1	728470	+		21599	26219	17637	17660	23961	23961					0.006447995347571123
IYGIHALLVV	10	Unmodified	_IYGIHALLVV_					0	0	0		ENST00000495274.1_1_21:45742848-45745285:+|nuORF;ENST00000474114.5_1_21:45741509-45744801:+|nuORF;ENST00000498841.5_1_21:45739892-45744801:+|nuORF;ENST00000466134.5_1_21:45739892-45745863:+|nuORF;ENST00000460521.5_1_21:45741509-45746742:+|nuORF;ENST00000467315.5_1_21:45739892-45746742:+|nuORF;ENSG00000141959|ENST00000349048|PFKL;nc|ENSG00000141959|P17858-2|PFKL;ENST00000397961.6_1_21:45725201-45746742:+|nuORF	ENST00000495274.1_1_21:45742848-45745285:+|nuORF	ENST00000495274.1_1_21:45742848-45745285:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.8396606445312	2	549.33951	1096.66447	0.65259	0.0003585	0.71247	0.00039139	1.3651	0.00074988	549.3400167081461	115.05	1.1632	115.05	114.47	115.63	0					31	24	2	0	0	0	0.027147	1	13210	13210		26.796	10.323	1	66048			21600	4948	17638	17661	23962	23962					0.1200006978779129
IYGIHALLVV	10	Unmodified	_IYGIHALLVV_					0	0	0		ENST00000495274.1_1_21:45742848-45745285:+|nuORF;ENST00000474114.5_1_21:45741509-45744801:+|nuORF;ENST00000498841.5_1_21:45739892-45744801:+|nuORF;ENST00000466134.5_1_21:45739892-45745863:+|nuORF;ENST00000460521.5_1_21:45741509-45746742:+|nuORF;ENST00000467315.5_1_21:45739892-45746742:+|nuORF;ENSG00000141959|ENST00000349048|PFKL;nc|ENSG00000141959|P17858-2|PFKL;ENST00000397961.6_1_21:45725201-45746742:+|nuORF	ENST00000495274.1_1_21:45742848-45745285:+|nuORF	ENST00000495274.1_1_21:45742848-45745285:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	549.33951	1096.66447	-0.1235	-6.7841E-05	-3.4042	-0.0018701	-3.5277	-0.0019379	549.337702685521	115.34	0.59206	115.23	114.9	115.49	-0.11777	0.089766	-0.0015981	NaN	19.36	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23873			21601	4948	17638	17661							0.1200006978779129
IYGMYFIGLF	10	Unmodified	_IYGMYFIGLF_					0	0	0			REV__tr|A0A7D6VSV0|A0A7D6VSV0_9CLOTRedoxindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14265PE=4SV=1	REV__tr|A0A7D6VSV0|A0A7D6VSV0_9CLOTRedoxindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14265PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	612.3160400390625	2	612.312103	1222.60965	2.0598	0.0012612	3.0244	0.0018519	5.0842	0.0031131	612.3137814782118	128.73	2.1086	128.73	128.14	130.25	0					106	44	3	0	0	0	0.33376	1	14934	14934		54.765	0	1	951440	+		21602	31541	17639	17662	23963	23963					0.0072531492485268245
IYGSQRALLK	10	Unmodified	_IYGSQRALLK_					0	0	0		tr|A0A553SQM9|A0A553SQM9_NIACIConjugaltransferproteinOS=NialliacirculansOX=1397GN=CEQ21_07930PE=4SV=1	tr|A0A553SQM9|A0A553SQM9_NIACIConjugaltransferproteinOS=NialliacirculansOX=1397GN=CEQ21_07930PE=4SV=1	tr|A0A553SQM9|A0A553SQM9_NIACIConjugaltransferproteinOS=NialliacirculansOX=1397GN=CEQ21_07930PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.3226318359375	2	574.842948	1147.67134	-0.38978	-0.00022406	-2.2106	-0.0012708	-2.6004	-0.0014948	574.8434226889985	47.333	0.3008	47.333	47.121	47.422	0					12	6	3	0	0	0	0.026826	1	3379	3379		44.377	3.8046	1	97924			21603	34182	17640	17663	23964	23964					0.1034138266836635
IYGTTVLLIN	10	Unmodified	_IYGTTVLLIN_					0	0	0			REV__ENSG00000174946|ENST00000309180|GPR171	REV__ENSG00000174946|ENST00000309180|GPR171	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.8377075195312	2	553.826432	1105.63831	2.083	0.0011536	0.52783	0.00029233	2.6108	0.0014459	554.3285826961164	108.52	0.64538	108.52	108.11	108.76	0					22	14	2	0	0	0	0.026697	1	12248	12248		45.952	0	1	153350	+		21604	21861	17641	17664	23965	23965					0.08971755825677974
IYGWQLTL	8	Unmodified	_IYGWQLTL_					0	0	0		nc|ENSG00000005471|P21439-3|ABCB4;ENSG00000005471|ENST00000649586|ABCB4;nc|ENSG00000005471|P21439|ABCB4;ENST00000488737.6_1_7:87133561-87160896:-|nuORF;nc|ENSG00000085563|P08183-2|ABCB1;ENSG00000085563|ENST00000622132|ABCB1	nc|ENSG00000005471|P21439-3|ABCB4;nc|ENSG00000085563|P08183-2|ABCB1	nc|ENSG00000085563|P08183-2|ABCB1	MULTI-MSMS	OvCa99_classI_Rep5	1	497.2723083496094	2	497.273835	992.533118	1.0155	0.00050499	-3.0955	-0.0015393	-2.08	-0.0010343	497.2721661972654	83.297	1.3963	83.297	82.865	84.261	0					61	32	3	0	0	0	0.35163	2	8646	8646;8671		97.473	4.2772	1	2982900			21605	1734;855	17642	17665	23966;23967	23966					0.03655259419895174
IYHDRILVI	9	Unmodified	_IYHDRILVI_					0	0	0		tr|A0A553SQM5|A0A553SQM5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07820PE=4SV=1	tr|A0A553SQM5|A0A553SQM5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07820PE=4SV=1	tr|A0A553SQM5|A0A553SQM5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07820PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	571.3410034179688	2	571.340041	1140.66553	1.6202	0.00092566	1.0144	0.00057954	2.6345	0.0015052	571.3405656361089	118.65	1.2162	118.65	118.25	119.47	0					82	25	4	0	0	0	0.36502	1	13580	13580		55.504	6.0627	1	4629400			21606	34180	17643	17666	23968	23968					0.10082284156692367
IYHHTGNNTF	10	Unmodified	_IYHHTGNNTF_					0	0	0		nc|ENSG00000154380|Q8N8S7-3|ENAH;ENSG00000154380|ENST00000366843|ENAH;ENAH-TMEM63A|1|fusion;nc|ENSG00000154380|Q8N8S7|ENAH	nc|ENSG00000154380|Q8N8S7-3|ENAH	nc|ENSG00000154380|Q8N8S7-3|ENAH	MULTI-MSMS	OvCa99_classI_Rep5	1	602.2804565429688	2	602.280712	1202.54687	-0.32303	-0.00019455	0.14758	8.8882E-05	-0.17545	-0.00010567	602.280702280326	40.27	0.95522	40.27	39.926	40.881	0					35	10	5	0	0	0	0.039859	1	2428	2428		132.76	66.329	1	1907000			21607	5733	17644	17667	23969	23969					-0.04630114818974107
IYHKQPIV	8	Unmodified	_IYHKQPIV_					0	0	0			REV__nc|ENSG00000004809|Q86VW1-3|SLC22A16	REV__nc|ENSG00000004809|Q86VW1-3|SLC22A16	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.2555236816406	2	499.295102	996.575651	-1.0149	-0.00050674	-2.9177	-0.0014568	-3.9326	-0.0019635	499.2934707165547	70.194	0.39397	66.713	66.393	66.787	-3.4812					12	7	2	0	0	0	0.028476	1	5289	5289		28.254	8.8943	1	33689	+		21608	16382	17645	17668	23970	23970					0.07722654548126684
IYHMKMAL	8	Unmodified	_IYHMKMAL_					0	0	0			REV__ENSG00000106524|ENST00000306999|ANKMY2	REV__ENSG00000106524|ENST00000306999|ANKMY2	MULTI-MSMS	OvCa9_classI_Rep2	2	503.7633972167969	2	503.764266	1005.51398	-0.34948	-0.00017605	-0.63452	-0.00031965	-0.98399	-0.0004957	503.76399167741886	92.972	1.6529	91.804	91.341	92.994	-1.168					87	31	4	0	0	0	0.64377	1	8309	8309		54.765	0	1	676190	+		21609	17807	17646	17669	23971	23971					0.011442635329899531
IYHMKMAL	8	Unmodified	_IYHMKMAL_					0	0	0			REV__ENSG00000106524|ENST00000306999|ANKMY2	REV__ENSG00000106524|ENST00000306999|ANKMY2	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.7648620605469	2	503.764266	1005.51398	-0.75808	-0.00038189	-0.059726	-3.0088E-05	-0.8178	-0.00041198	503.7641234658958	94.306	1.4911	91.838	91.571	93.062	-2.4685					76	29	4	0	0	0	0.72922	1	8297	8297		37.028	1.4102	1	1024600	+		21610	17807	17646	17669	23972	23972					0.011442635329899531
IYHNPTANSF	10	Unmodified	_IYHNPTANSF_					0	0	0		VASP|p.E358Dfs*21|1|0.1|ENSG00000125753|chr19:45525971-45525972|-/CAAGACCAGCCTGGCCAACATGGTGAAACCC|frameshift_variant;ENSG00000125753|ENST00000245932|VASP;ENST00000586619.1_1_19:46010999-46025451:+|nuORF	VASP|p.E358Dfs*21|1|0.1|ENSG00000125753|chr19:45525971-45525972|-/CAAGACCAGCCTGGCCAACATGGTGAAACCC|frameshift_variant	VASP|p.E358Dfs*21|1|0.1|ENSG00000125753|chr19:45525971-45525972|-/CAAGACCAGCCTGGCCAACATGGTGAAACCC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	582.2788696289062	2	582.277638	1162.54072	-0.73694	-0.0004291	-0.082949	-4.8299E-05	-0.81989	-0.0004774	582.2775874717094	65.341	1.1038	65.341	64.955	66.059	0					58	22	4	0	0	0	4.0424000000000005E-19	2	5984	5984;6013		281.6	151.91	1	6135600			21611	3732	17647	17670	23973;23974	23973					-0.03404633050490702
IYHPNVDKL	9	Unmodified	_IYHPNVDKL_					0	0	0		ENSG00000177889|ENST00000318066|UBE2N;nc|ENSG00000276380|Q5JXB2|UBE2NL	ENSG00000177889|ENST00000318066|UBE2N	ENSG00000177889|ENST00000318066|UBE2N	MULTI-MSMS	OvCa99_classI_Rep5	1	549.8036499023438	2	549.800749	1097.58694	-0.13085	-7.194E-05	-0.098242	-5.4014E-05	-0.22909	-0.00012595	549.800587945427	65.014	0.83655	65.014	64.71	65.546	0					57	20	4	0	0	0	0.070405	1	5939	5939		107.01	16.638	1	3159500			21612	7719	17648	17671	23975	23975					0.04205431851596586
IYHRLFKE	8	Unmodified	_IYHRLFKE_					0	0	0			REV__tr|A0A553SG21|A0A553SG21_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09950PE=4SV=1	REV__tr|A0A553SG21|A0A553SG21_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09950PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.3046875	2	553.311284	1104.60801	-0.33803	-0.00018704	-0.89223	-0.00049368	-1.2303	-0.00068072	553.3106291229731	51.525	0.66275	51.525	51.332	51.995	0					20	15	2	0	0	0	0.028476	1	3968	3968		71.296	16.573	1	539600	+		21613	29650	17649	17672	23976	23976					0.05989441951146546
IYHTKWGGF	9	Unmodified	_IYHTKWGGF_					0	0	0			REV__ENSG00000163902|ENST00000296255|RPN1	REV__ENSG00000163902|ENST00000296255|RPN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.813232421875	2	554.782359	1107.55016	-0.7363	-0.00040849	2.5738	0.0014279	1.8375	0.0010194	554.784235614093	45.592	0.6275	42.554	42.334	42.961	-3.0385					14	11	2	0	0	0	0.027462	1	2363	2363		17.365	0	1	11287	+		21614	20909	17650	17673	23977	23977					0.0006918002570728277
IYHTQCKCP	9	Unmodified	_IYHTQCKCP_					0	0	0			REV__chr1:71075639-71076795|289|14.53|0.28|5.68|-|0|TE_info:L2,L2_dup1626,L2,LINE,acceptor,-,71075270,71075639|None,ZRANB2|4	REV__chr1:71075639-71076795|289|14.53|0.28|5.68|-|0|TE_info:L2,L2_dup1626,L2,LINE,acceptor,-,71075270,71075639|None,ZRANB2|4	MULTI-MSMS	OvCa99_classI_Rep5	1	546.750732421875	2	546.751887	1091.48922	0.35678	0.00019507	-0.36874	-0.00020161	-0.011967	-6.5431E-06	546.7514935067812	45.459	0.90955	45.459	45.114	46.024	0					48	20	3	0	0	0	0.11171	1	3150	3150		94.006	14.294	1	1296900	+		21615	15834	17651	17674	23978	23978					-0.0528641634041378
IYHTQCKCP	9	Unmodified	_IYHTQCKCP_					0	0	0			REV__chr1:71075639-71076795|289|14.53|0.28|5.68|-|0|TE_info:L2,L2_dup1626,L2,LINE,acceptor,-,71075270,71075639|None,ZRANB2|4	REV__chr1:71075639-71076795|289|14.53|0.28|5.68|-|0|TE_info:L2,L2_dup1626,L2,LINE,acceptor,-,71075270,71075639|None,ZRANB2|4	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	546.751887	1091.48922	0.35678	0.00019507	-0.36874	-0.00020161	-0.011967	-6.5431E-06	546.7514935067812	45.459	0.90955	45.459	45.114	46.024	0	0	0	NaN	94.006	48	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1296900	+		21616	15834	17651	17674							-0.0528641634041378
IYIAGHPAF	9	Unmodified	_IYIAGHPAF_					0	0	0		ENSG00000104824|ENST00000221419|HNRNPL;nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF;HNRNPL-SRRT|2|fusion;HNRNPL-SRRT|1|fusion	ENSG00000104824|ENST00000221419|HNRNPL;HNRNPL-SRRT|2|fusion	ENSG00000104824|ENST00000221419|HNRNPL	MULTI-MSMS	OvCa99_classI_Rep5	1	494.7688903808594	2	494.766178	987.517802	2.5065	0.0012401	-1.0766	-0.00053267	1.4299	0.00070744	494.7655223345776	90.291	1.9006	90.291	90.02	91.92	0					97	46	4	0	0	0	0.088217	3	9654	9654;9682;9737		100.36	19.363	1	35689000			21617	2394;14487	17652	17675	23979;23980;23981	23979					0.023543926227148404
IYIASVGVVL	10	Unmodified	_IYIASVGVVL_					0	0	0			REV__nc|ENSG00000101307|O00241-2|SIRPB1	REV__nc|ENSG00000101307|O00241-2|SIRPB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.7551879882812	2	517.318243	1032.62193	1.94	0.0010036	0.78103	0.00040404	2.721	0.0014076	517.3184086131187	98.771	0.65331	98.771	98.461	99.115	0					33	15	3	0	0	0	0.026582	1	10907	10907		68.485	12.98	1	1358600	+		21618	17489	17653	17676	23982	23982					0.10692674659571821
IYICSHHMN	9	Unmodified	_IYICSHHMN_					0	0	0		nc|ENSG00000103599|Q86VS3-4|IQCH;nc|ENSG00000103599|Q86VS3-2|IQCH;ENSG00000103599|ENST00000335894|IQCH	nc|ENSG00000103599|Q86VS3-4|IQCH	nc|ENSG00000103599|Q86VS3-4|IQCH	MULTI-MSMS	OvCa99_classI_Rep5	1	559.2490844726562	2	559.249511	1116.48447	2.1758	0.0012168	-1.3032	-0.00072881	0.87261	0.00048801	559.2486190957633	107.18	0.58752	107.18	106.93	107.52	0					30	13	3	0	0	0	0.21395	1	12091	12091		73.975	13.681	1	932950			21619	2333	17654	17677	23983	23983					-0.06911300483147897
IYIDASCLTW	10	Unmodified	_IYIDASCLTW_					0	0	0		NUTF2|p.V85Sfs*6|1|0.13|ENSG00000102898|chr16:67868581-67868582|-/A|frameshift_variant;ENST00000568233.5_1_16:67899033-67902523:+|nuORF;ENST00000551207.2_1_14:36289043-36289391:+|nuORF;ENSG00000102898|ENST00000219169|NUTF2	NUTF2|p.V85Sfs*6|1|0.13|ENSG00000102898|chr16:67868581-67868582|-/A|frameshift_variant	NUTF2|p.V85Sfs*6|1|0.13|ENSG00000102898|chr16:67868581-67868582|-/A|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.312255859375	2	592.78645	1183.55835	1.0876	0.00064469	1.6057	0.00095185	2.6933	0.0015965	592.7873451559539	154.06	1.8777	154.06	153.5	155.38	0					65	37	3	0	0	0	0.026849	1	18073	18073		49.442	10.42	1	71233			21620	2264	17655	17678	23984	23984					-0.026090538398420904
IYIDRFEDL	9	Unmodified	_IYIDRFEDL_					0	0	0		ENSG00000152219|ENST00000282032|ARL14EP	ENSG00000152219|ENST00000282032|ARL14EP	ENSG00000152219|ENST00000282032|ARL14EP	MULTI-MSMS	OvCa99_classI_Rep5	1	592.3052368164062	2	592.303321	1182.59209	1.4913	0.00088331	0.37416	0.00022161	1.8655	0.0011049	592.3034166935284	111.8	1.0978	111.8	111.51	112.61	0					55	23	3	0	0	0	0.060996	2	12703	12703;12725		112.41	14.938	1	1610000			21621	5612	17656	17679	23985;23986	23985					0.008096909235973726
IYIIMQSCW	9	Unmodified	_IYIIMQSCW_					0	0	0		ENST00000380987.2_1_13:28578191-28599431:-|nuORF;nc|ENSG00000122025|P36888-2|FLT3;ENSG00000122025|ENST00000241453|FLT3	ENST00000380987.2_1_13:28578191-28599431:-|nuORF	ENST00000380987.2_1_13:28578191-28599431:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	578.78271484375	2	578.780113	1155.54567	1.0032	0.00058064	0.10198	5.9024E-05	1.1052	0.00063967	578.7806231576791	146.64	1.1274	146.64	146.38	147.5	0					54	22	4	0	0	0	0.38529	1	17191	17191		53.351	14.33	1	311930			21622	3512	17657	17680	23987	23987					-0.02587788503728916
IYIINVHSM	9	Unmodified	_IYIINVHSM_					0	0	0		nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3;ENSG00000105339|ENST00000519811|DENND3;ENST00000520571.1_1_8:142199090-142200632:+|nuORF;nc|ENSG00000105339|A2RUS2-3|DENND3	nc|ENSG00000105339|A2RUS2-2|DENND3	nc|ENSG00000105339|A2RUS2-2|DENND3	MULTI-MSMS	OvCa99_classI_Rep5	1	545.2952270507812	2	545.291702	1088.56885	1.2859	0.00070121	-0.038073	-2.0761E-05	1.2479	0.00068045	545.2915621015966	103.08	1.4732	103.08	102.81	104.28	0					80	34	4	0	0	0	0.0078217	2	11506	11506;11536		180.93	85.111	1	10979000			21623	2443	17658	17681	23988;23989	23988					0.0281097360525564
IYIIRDVFL	9	Unmodified	_IYIIRDVFL_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	OvCa99_classI_Rep5	1	576.3458862304688	2	576.344792	1150.67503	2.1666	0.0012487	0.18951	0.00010922	2.3561	0.001358	576.3447740867039	121.6	0.97573	121.6	121.25	122.22	0					62	20	4	0	0	0	0.50149	1	13983	13983		42.396	1.8235	1	597340	+		21624	17054	17659	17682	23990	23990					0.1057205244223951
IYIKHFMM	8	Oxidation (M)	_IYIKHFM(Oxidation (M))M_		IYIKHFM(0.981)M(0.019)		IYIKHFM(17)M(-17)	0	0	1			REV__nc|ENSG00000173175|O95622-2|ADCY5;REV__ENSG00000174233|ENST00000357869|ADCY6	REV__ENSG00000174233|ENST00000357869|ADCY6	MULTI-MSMS	OvCa99_classI_Rep5	1	549.7781372070312	2	549.777373	1097.54019	-0.073945	-4.0653E-05	-0.85927	-0.00047241	-0.93322	-0.00051306	549.776331708367	62.269	0.86458	62.269	61.912	62.777	0					53	20	4	0	0	0	0.65582	1	5542	5542		52.299	6.3269	2	3800600	+		21625	21819;21754	17660	17683	23991	23991		507			-0.004674672955616188
IYIKHPHLF	9	Unmodified	_IYIKHPHLF_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	MULTI-MSMS	OvCa99_classI_Rep5	1	584.3388061523438	2	584.337301	1166.66005	0.43529	0.00025435	0.22131	0.00012932	0.6566	0.00038367	584.33738784474	74.306	2.6896	74.306	73.829	76.518	0					162	67	5	0	0	0	0.043206	3	7331	7301;7331;7360		123.99	36.234	1	23106000			21626	2180	17661	17684	23992;23993;23994	23993					0.08338605364883733
IYIKHPHLFKY	11	Unmodified	_IYIKHPHLFKY_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.7802429199219	3	486.946724	1457.81834	-1.215	-0.00059163	1.1261	0.00054833	-0.088909	-4.3294E-05	486.9470898819204	70.086	0.84699	70.086	69.756	70.603	0					58	20	4	0	0	0	0.025864	1	6720	6720		26.063	0	1	1509600			21627	2180	17662	17685	23995	23995					0.10774479553310812
IYIKQIKTF	9	Unmodified	_IYIKQIKTF_					0	0	0		ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	MULTI-MSMS	OvCa99_classI_Rep5	1	577.3538818359375	2	577.352617	1152.69068	1.3555	0.0007826	0.56954	0.00032882	1.925	0.0011114	577.3528928556177	79.415	1.8707	79.415	79.079	80.949	0					140	45	5	0	0	0	0.0078217	3	8080	8080;8110;8143		180.93	76.179	1	33557000			21628	2318	17663	17686	23996;23997;23998	23996					0.12044338959276502
IYILDPELL	9	Unmodified	_IYILDPELL_					0	0	0		ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;ENST00000528173.5_1_11:46391373-46400221:+|nuORF;nc|ENSG00000149091|Q13574-6|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;ENST00000529698.1_1_11:46396583-46398763:+|nuORF;nc|ENSG00000149091|Q13574-1|DGKZ	ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-1|DGKZ	ENSG00000149091|ENST00000456247|DGKZ	MULTI-MSMS	OvCa99_classI_Rep5	1	544.8165283203125	2	544.815533	1087.61651	0.34247	0.00018658	-0.48705	-0.00026535	-0.14458	-7.877E-05	544.8150823385337	162.05	0.80986	162.05	161.72	162.53	0					43	15	4	0	0	0	0.064607	2	19009	18986;19009		110.34	40.612	1	780280			21629	5440;15083	17664	17687	23999;24000	24000					0.07620951077092286
IYILQQGQVG	10	Unmodified	_IYILQQGQVG_					0	0	0			REV__nc|ENSG00000175497|Q8N608-4|DPP10	REV__nc|ENSG00000175497|Q8N608-4|DPP10	MULTI-MSMS	OvCa9_classI_Rep2	2	559.8155517578125	2	559.813856	1117.61316	0.75444	0.00042235	2.6115	0.0014619	3.3659	0.0018843	559.8149429329505	132.97	1.1835	132.74	132.38	133.56	-0.22696					73	23	4	0	0	0	0.55145	1	13159	13159		47.916	0.25827	1	163000	+		21630	21901	17665	17688	24001	24001					0.05905701023084475
IYINASENL	9	Unmodified	_IYINASENL_					0	0	0		ENST00000534041.5_1_11:74632348-74660135:-|nuORF;ENST00000533598.5_1_11:74621056-74648096:-|nuORF;nc|ENSG00000166435|Q6P2D8-2|XRRA1;nc|ENSG00000166435|Q6P2D8-4|XRRA1;nc|ENSG00000166435|Q6P2D8-3|XRRA1;nc|ENSG00000166435|Q6P2D8|XRRA1;ENSG00000166435|ENST00000684022|XRRA1	ENST00000534041.5_1_11:74632348-74660135:-|nuORF	ENST00000534041.5_1_11:74632348-74660135:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.77001953125	2	518.769114	1035.52368	-0.84698	-0.00043939	0.71291	0.00036984	-0.13407	-6.9553E-05	518.7693309592166	82.441	1.5097	79.758	79.298	80.808	-2.6829					83	30	4	0	0	0	0.22961	1	6811	6811		71.296	2.5089	1	876750			21631	6679	17666	17689	24002	24002					0.007334463437246086
IYINASENL	9	Unmodified	_IYINASENL_					0	0	0		ENST00000534041.5_1_11:74632348-74660135:-|nuORF;ENST00000533598.5_1_11:74621056-74648096:-|nuORF;nc|ENSG00000166435|Q6P2D8-2|XRRA1;nc|ENSG00000166435|Q6P2D8-4|XRRA1;nc|ENSG00000166435|Q6P2D8-3|XRRA1;nc|ENSG00000166435|Q6P2D8|XRRA1;ENSG00000166435|ENST00000684022|XRRA1	ENST00000534041.5_1_11:74632348-74660135:-|nuORF	ENST00000534041.5_1_11:74632348-74660135:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	518.769114	1035.52368	0.64333	0.00033374	-0.76168	-0.00039514	-0.11835	-6.1398E-05	518.7686246119459	81.584	1.5431	79.935	79.365	80.908	-1.6485	0.088715	-0.00029161	NaN	71.296	99	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	347550			21632	6679	17666	17689							0.007334463437246086
IYIPLGIYV	9	Unmodified	_IYIPLGIYV_					0	0	0		L1PA11_dup580|chr2:214963946-214966413:+|1.0797114683140654|0.244988541359441|2.14|429.0|114|2|anti-sense	L1PA11_dup580|chr2:214963946-214966413:+|1.0797114683140654|0.244988541359441|2.14|429.0|114|2|anti-sense	L1PA11_dup580|chr2:214963946-214966413:+|1.0797114683140654|0.244988541359441|2.14|429.0|114|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.853515625	2	525.815336	1049.61612	-0.036607	-1.9248E-05	-2.6112	-0.001373	-2.6478	-0.0013923	525.812540991397	97.816	0.30735	95.438	95.317	95.624	-2.3786					8	5	2	0	0	0	0.027462	1	8674	8674		21.702	14.012	1	11662			21633	14650	17667	17690	24003	24003					0.09329576147911212
IYIPLGIYV	9	Unmodified	_IYIPLGIYV_					0	0	0		L1PA11_dup580|chr2:214963946-214966413:+|1.0797114683140654|0.244988541359441|2.14|429.0|114|2|anti-sense	L1PA11_dup580|chr2:214963946-214966413:+|1.0797114683140654|0.244988541359441|2.14|429.0|114|2|anti-sense	L1PA11_dup580|chr2:214963946-214966413:+|1.0797114683140654|0.244988541359441|2.14|429.0|114|2|anti-sense	MULTI-MATCH	OvCa99_classI_Rep5	1		2	525.815336	1049.61612	1.839	0.00096697	-3.4496	-0.0018138	-1.6106	-0.00084687	525.8134866660633	95.705	0.2495	95.705	95.577	95.826	0	0.13374	-0.00036222	NaN	14.664	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63977			21634	14650	17667	17690							0.09329576147911212
IYISTLKTEF	10	Unmodified	_IYISTLKTEF_					0	0	0		ENSG00000100591|ENST00000216479|AHSA1;nc|ENSG00000100591|O95433-2|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	MULTI-MSMS	OvCa99_classI_Rep5	1	607.8369750976562	2	607.836997	1213.65944	2.3541	0.0014309	-0.58332	-0.00035457	1.7708	0.0010763	607.836605112312	108.41	1.0803	108.41	108.07	109.15	0					53	24	4	0	0	0	0.026604	2	12245	12245;12272		140.11	49.742	1	1794800			21635	2086	17668	17691	24004;24005	24004					0.061157211345062024
IYIVHDEVK	9	Unmodified	_IYIVHDEVK_					0	0	0		ENST00000557290.1_1_14:58737043-58738610:+|nuORF;nc|ENSG00000100567|P25788-2|PSMA3;ENSG00000100567|ENST00000216455|PSMA3	ENST00000557290.1_1_14:58737043-58738610:+|nuORF	ENST00000557290.1_1_14:58737043-58738610:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	558.8276977539062	2	558.308406	1114.60226	1.7788	0.00099312	-1.6872	-0.00094198	0.091597	5.114E-05	558.3072291089837	96.755	0.89949	94.329	93.913	94.812	-2.4256					30	17	2	0	0	0	0.027455	1	8560	8560		42.396	0	1	130610			21636	2084	17669	17692	24006	24006					0.04954298648794975
IYIWDLNNF	9	Unmodified	_IYIWDLNNF_					0	0	0		nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-5|SEC31A;SEC31A|p.I462Lfs*16|1|0.44|ENSG00000138674|chr4:82864412-82864412|T/-|frameshift_variant	nc|ENSG00000138674|O94979-8|SEC31A	nc|ENSG00000138674|O94979-8|SEC31A	MULTI-MSMS	OvCa99_classI_Rep5	1	599.3015747070312	2	599.300581	1196.58661	0.57612	0.00034527	-1.2807	-0.0007675	-0.70455	-0.00042224	599.299879626759	162.2	0.93637	162.2	161.72	162.65	0					80	20	6	0	0	0	0.00063743	2	19008	19008;19032		237.81	120.91	1	11427000			21637	4710	17670	17693	24007;24008	24007					-0.003819878682406852
IYIYEIDYN	9	Unmodified	_IYIYEIDYN_					0	0	0			REV__tr|A0A7D7A1L0|A0A7D7A1L0_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04615PE=4SV=1	REV__tr|A0A7D7A1L0|A0A7D7A1L0_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04615PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	602.8076171875	2	603.289879	1204.56521	1.5914	0.00096008	-2.5408	-0.0015328	-0.94939	-0.00057276	603.2875706149769	130.82	0.85919	130.82	130.29	131.15	0					27	17	3	0	0	0	0.027453	1	15209	15209		54.776	16.965	1	63001	+		21638	32497	17671	17694	24009	24009					-0.02889417687583773
IYKAPSENW	9	Unmodified	_IYKAPSENW_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	MULTI-MSMS	OvCa99_classI_Rep5	1	554.2779541015625	2	554.277106	1106.53966	0.19726	0.00010934	-0.33008	-0.00018295	-0.13282	-7.3619E-05	554.2766762035917	72.87	0.34897	72.87	72.645	72.994	0					30	8	4	0	0	0	0.049969	1	7130	7130		118.74	40.479	1	2326000			21639	4019	17672	17695	24010	24010					-0.009348474193984657
IYKDRDSQI	9	Unmodified	_IYKDRDSQI_					0	0	0		nc|ENSG00000006712|Q8N7H5-3|PAF1;nc|ENSG00000006712|Q8N7H5-2|PAF1;ENSG00000006712|ENST00000221265|PAF1	nc|ENSG00000006712|Q8N7H5-3|PAF1	nc|ENSG00000006712|Q8N7H5-3|PAF1	MULTI-MSMS	OvCa99_classI_Rep5	1	569.2986450195312	2	569.29857	1136.58259	-0.40933	-0.00023303	0.62458	0.00035557	0.21524	0.00012254	569.2986053688343	39.25	0.66856	39.25	38.836	39.505	0					23	14	3	0	0	0	0.3249	1	2300	2300		60.118	12.461	1	244750			21640	888	17673	17696	24011	24011					0.01975922638052907
IYKDSSTFL	9	Unmodified	_IYKDSSTFL_					0	0	0		ENSG00000145388|ENST00000388822|METTL14	ENSG00000145388|ENST00000388822|METTL14	ENSG00000145388|ENST00000388822|METTL14	MULTI-MSMS	OvCa99_classI_Rep5	1	537.2802734375	2	537.279315	1072.54408	1.9949	0.0010718	-0.77876	-0.00041841	1.2161	0.00065341	537.2787394892151	82.052	1.3383	82.052	81.654	82.992	0					83	31	4	0	0	0	0.094616	1	8482	8482		98.629	29.843	1	7977700			21641	5221	17674	17697	24012	24012					0.010706170035291507
IYKEIALSQL	10	Unmodified	_IYKEIALSQL_					0	0	0		tr|A0A7D6VNF4|A0A7D6VNF4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17625PE=4SV=1	tr|A0A7D6VNF4|A0A7D6VNF4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17625PE=4SV=1	tr|A0A7D6VNF4|A0A7D6VNF4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17625PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3438720703125	2	589.344989	1176.67542	-2.1868	-0.0012888	-1.3084	-0.00077111	-3.4952	-0.0020599	589.3441619466173	148.26	4.549	146.82	145.53	150.08	-1.435					304	95	6	0	0	0	0.73378	1	14906	14906		26.693	0	1	385010			21642	34700	17675	17698	24013	24013					0.09415427371436635
IYKFNILPG	9	Unmodified	_IYKFNILPG_					0	0	0		ENST00000547673.1_1_12:77242095-77243332:+|nuORF	ENST00000547673.1_1_12:77242095-77243332:+|nuORF	ENST00000547673.1_1_12:77242095-77243332:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.803466796875	2	532.810585	1063.60662	-0.44984	-0.00023968	1.4773	0.00078711	1.0274	0.00054743	532.8115083583846	54.727	0.25856	54.727	54.59	54.848	0					7	5	2	0	0	0	0.027462	1	4442	4442		38.806	9.6566	1	160800			21643	13552	17676	17699	24014	24014					0.07735807862354704
IYKFNILPG	9	Unmodified	_IYKFNILPG_					0	0	0		ENST00000547673.1_1_12:77242095-77243332:+|nuORF	ENST00000547673.1_1_12:77242095-77243332:+|nuORF	ENST00000547673.1_1_12:77242095-77243332:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	532.810585	1063.60662	-1.5892	-0.00084677	-3.7538	-0.0020001	-5.343	-0.0028468	532.8088449667464	57.813	0.54837	55.021	54.674	55.223	-2.7921	0.11668	-0.00047931	NaN	37.159	17	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14512			21644	13552	17676	17699							0.07735807862354704
IYKFNILPG	9	Unmodified	_IYKFNILPG_					0	0	0		ENST00000547673.1_1_12:77242095-77243332:+|nuORF	ENST00000547673.1_1_12:77242095-77243332:+|nuORF	ENST00000547673.1_1_12:77242095-77243332:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	532.810585	1063.60662	-1.1573	-0.00061663	-4.4861	-0.0023903	-5.6434	-0.0030069	532.8079215176986	58.357	0.85127	54.965	54.499	55.35	-3.392	0.060371	-0.0012597	NaN	37.159	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48261			21645	13552	17676	17699							0.07735807862354704
IYKGKKFNA	9	Unmodified	_IYKGKKFNA_					0	0	0		ENSG00000105248|ENST00000262962|YJU2	ENSG00000105248|ENST00000262962|YJU2	ENSG00000105248|ENST00000262962|YJU2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.77783203125	2	534.813659	1067.61277	-1.2812	-0.00068523	-1.3486	-0.00072125	-2.6298	-0.0014065	534.8129951642028	76.797	0.80782	73.859	73.412	74.22	-2.9389					31	16	3	0	0	0	0.027462	1	6103	6103		40.573	4.9543	1	139340			21646	2433	17677	17700	24015	24015					0.08166326093896714
IYKGKRVLL	9	Unmodified	_IYKGKRVLL_					0	0	0		tr|A0A7D6ZT26|A0A7D6ZT26_9CLOTPRC-barreldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09840PE=4SV=1	tr|A0A7D6ZT26|A0A7D6ZT26_9CLOTPRC-barreldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09840PE=4SV=1	tr|A0A7D6ZT26|A0A7D6ZT26_9CLOTPRC-barreldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09840PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.326171875	2	545.360776	1088.707	1.8266	0.00099615	4.2397	0.0023122	6.0663	0.0033083	545.3641590155752	110.87	0.22133	110.87	110.8	111.02	0					5	4	2	0	0	0	0.027462	1	12610	12610		26.796	10.323	1	54615			21647	35747	17678	17701	24016	24016					0.1661946491603885
IYKIKKSGPDL	11	Unmodified	_IYKIKKSGPDL_					0	0	0			REV__ENSG00000150394|ENST00000577390|CDH8	REV__ENSG00000150394|ENST00000577390|CDH8	MULTI-MSMS	OvCa99_classI_Rep5	1	421.25677490234375	3	421.255334	1260.74417	0.010729	4.5195E-06	0.90538	0.00038139	0.9161	0.00038591	421.25558253701183	58.789	0.90562	58.789	58.322	59.228	0					42	22	3	0	0	0	0.66495	1	5029	5029		38.754	1.2454	1	2235100	+		21648	20188	17679	17702	24017	24017					0.12423091671121256
IYKKIYTSI	9	Unmodified	_IYKKIYTSI_					0	0	0			REV__ENST00000497571.5_1_10:3818982-3819105:-|nuORF	REV__ENST00000497571.5_1_10:3818982-3819105:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	564.8074340820312	2	564.8368	1127.65905	-0.95523	-0.00053955	-3.5511	-0.0020058	-4.5063	-0.0025453	564.8343410918784	100.53	1.1549	98.925	98.659	99.814	-1.6053					50	22	4	0	0	0	0.027426	1	6809	6809		66.429	19.972	1	439940	+		21649	26780	17680	17703	24018	24018					0.10032346205343856
IYKKNGPIPSA	11	Unmodified	_IYKKNGPIPSA_					0	0	0			REV__tr|A0A7D6VTP1|A0A7D6VTP1_9CLOTRibonucleaseJOS=ClostridiumintestinaleOX=36845GN=rnjPE=3SV=1	REV__tr|A0A7D6VTP1|A0A7D6VTP1_9CLOTRibonucleaseJOS=ClostridiumintestinaleOX=36845GN=rnjPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.8329467773438	2	594.342781	1186.67101	0.047389	2.8165E-05	-3.3683	-0.0020019	-3.3209	-0.0019738	594.3406942027049	22.19	0.64333	22.19	22.017	22.66	0					39	15	4	0	0	0	0.025701	1	239	239		36.447	2.2742	1	507300	+		21650	31619	17681	17704	24019	24019					0.0851396294854112
IYKNFRKFA	9	Unmodified	_IYKNFRKFA_					0	0	0			REV__nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	REV__nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.819580078125	2	593.840208	1185.66586	2.5326	0.001504	-0.74484	-0.00044232	1.7878	0.0010617	594.3408281550234	80.546	0.38686	80.546	80.399	80.786	0					9	8	2	0	0	0	0.027462	1	8252	8252		30.504	0	1	160540	+		21651	17463	17682	17705	24020	24020					0.08045703876564403
IYKNSGKD	8	Unmodified	_IYKNSGKD_					0	0	0			REV__nc|ENSG00000196169|Q2TAC6-3|KIF19	REV__nc|ENSG00000196169|Q2TAC6-3|KIF19	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.93841552734375	2	462.742899	923.471246	-1.5482	-0.00071644	1.967	0.00091021	0.41875	0.00019377	462.7435832162902	45.116	0.5185	42.078	41.867	42.386	-3.0385					15	9	2	0	0	0	0.028476	1	2305	2305		29.15	14.485	1	36232	+		21652	22792	17683	17706	24021	24021					0.006449080007655539
IYKPVTDFF	9	Unmodified	_IYKPVTDFF_					0	0	0		ENSG00000138095|ENST00000260665|LRPPRC;ENST00000472420.5_1_2:44123526-44126707:-|nuORF;ENST00000463456.5_1_2:44115741-44128754:-|nuORF	ENSG00000138095|ENST00000260665|LRPPRC	ENSG00000138095|ENST00000260665|LRPPRC	MULTI-MSMS	OvCa99_classI_Rep5	1	565.3016357421875	2	565.30005	1128.58555	2.2573	0.0012761	0.03676	2.0781E-05	2.2941	0.0012969	565.2999184750223	112.77	0.67735	112.77	112.52	113.2	0					39	14	4	0	0	0	0.019133	1	12834	12834		148.04	39.955	1	2673600			21653	4658	17684	17707	24022	24022					0.026397977628448643
IYKSRPPQP	9	Unmodified	_IYKSRPPQP_					0	0	0			REV__ENSG00000106628|ENST00000610533|POLD2	REV__ENSG00000106628|ENST00000610533|POLD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.267578125	2	543.308741	1084.60293	-0.2187	-0.00011882	-0.66191	-0.00035962	-0.88062	-0.00047845	543.3081447176924	58.565	0.6795	58.565	58.403	59.083	0					24	16	2	0	0	0	0.027462	1	5046	5046		34.173	0	1	529220	+		21654	17815	17685	17708	24023	24023					0.06401138088517655
IYKTSILVF	9	Unmodified	_IYKTSILVF_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1;ENST00000264874.7_1_6:7397003-7402949:+|nuORF	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MSMS	OvCa99_classI_Rep5	1	542.3268432617188	2	542.326068	1082.63758	2.3571	0.0012783	-0.33601	-0.00018222	2.0211	0.0010961	542.3257289658633	115.6	1.071	115.6	115.25	116.32	0					55	22	4	0	0	0	0.1804	1	13204	13204		79.713	2.866	1	624190			21655	3680	17686	17709	24024	24024					0.09956961176635559
IYKTYNITK	9	Unmodified	_IYKTYNITK_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.3035888671875	2	572.324057	1142.63356	1.7246	0.00098704	-2.4199	-0.0013849	-0.69526	-0.00039791	572.8238679945616	77.968	0.95454	77.968	77.714	78.668	0					26	22	2	0	0	0	0.027403	1	7970	7970		82.75	15.257	1	310900			21656	2997	17687	17710	24025	24025					0.06794871682882331
IYKTYNITK	9	Unmodified	_IYKTYNITK_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	572.324057	1142.63356	-0.56978	-0.0003261	-3.7378	-0.0021392	-4.3076	-0.0024653	572.3217056580296	79.498	1.4282	77.767	77.154	78.583	-1.7311	0.0078776	-0.00013454	NaN	82.75	47	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28059			21657	2997	17687	17710							0.06794871682882331
IYKTYNITK	9	Unmodified	_IYKTYNITK_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	572.324057	1142.63356	-0.2074	-0.0001187	-3.9733	-0.002274	-4.1807	-0.0023927	572.3219204745337	79.887	0.908	77.548	77.257	78.165	-2.3399	-0.21141	-0.00040405	NaN	82.75	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65147			21658	2997	17687	17710							0.06794871682882331
IYKTYNITK	9	Unmodified	_IYKTYNITK_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000462668.5_1_3:160131924-160151594:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	572.324057	1142.63356	-0.92092	-0.00052707	-3.4002	-0.001946	-4.3211	-0.0024731	572.3220108057785	80.464	0.88048	77.753	77.466	78.347	-2.7106	-0.005828	0.00025192	NaN	82.75	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70100			21659	2997	17687	17710							0.06794871682882331
IYKVKNTQL	9	Unmodified	_IYKVKNTQL_					0	0	0			REV__tr|A0A7D6VNZ6|A0A7D6VNZ6_9CLOTPyridoxalphosphatehomeostasisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14650PE=3SV=1	REV__tr|A0A7D6VNZ6|A0A7D6VNZ6_9CLOTPyridoxalphosphatehomeostasisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14650PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	553.8416137695312	2	553.832049	1105.64954	2.2854	0.0012657	-0.89826	-0.00049749	1.3871	0.00076824	553.8314111077262	75.005	1.0452	75.005	74.478	75.523	0					81	25	4	0	0	0	0.074342	1	7436	7436		104.75	0	1	4048400	+		21660	31217	17688	17711	24026	24026					0.10094577919812764
IYKWITDNF	9	Unmodified	_IYKWITDNF_					0	0	0		ENSG00000129654|ENST00000322957|FOXJ1	ENSG00000129654|ENST00000322957|FOXJ1	ENSG00000129654|ENST00000322957|FOXJ1	MULTI-MSMS	OvCa99_classI_Rep5	1	600.3084106445312	2	600.308406	1198.60226	0.56009	0.00033623	1.2996	0.00078019	1.8597	0.0011164	600.3092141606667	114.68	0.97193	114.68	114.42	115.39	0					54	20	4	0	0	0	0.070405	2	13101	13080;13101		107.01	40.578	1	687110			21661	3940	17689	17712	24027;24028	24028					0.010902986487963062
IYLCDIGIPQ	10	Unmodified	_IYLCDIGIPQ_					0	0	0		ENSG00000179151|ENST00000315127|EDC3	ENSG00000179151|ENST00000315127|EDC3	ENSG00000179151|ENST00000315127|EDC3	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.326416015625	2	567.796817	1133.57908	1.8561	0.0010539	1.0939	0.0006211	2.95	0.001675	567.7973230016718	112.46	0.95039	112.46	112.2	113.15	0					43	20	3	0	0	0	0.027422	1	12839	12839		104.75	8.5561	1	2083100			21662	7806	17690	17713	24029	24029					0.01763536539829147
IYLDEDLIK	9	Unmodified	_IYLDEDLIK_					0	0	0			REV__ENSG00000197299|ENST00000355112|BLM	REV__ENSG00000197299|ENST00000355112|BLM	MULTI-MSMS	OvCa99_classI_Rep5	1	561.3121948242188	2	561.308072	1120.60159	3.3586	0.0018852	-1.8925	-0.0010623	1.4661	0.00082293	561.3068211183181	98.976	0.38935	98.976	98.725	99.115	0					13	9	2	0	0	0	0.091859	1	10932	10932		99.375	14.459	1	602500	+		21663	22909	17691	17714	24030	24030					0.046114592090816586
IYLDIFYI	8	Unmodified	_IYLDIFYI_					0	0	0		ENSG00000282608|ENST00000241356|ADORA3	ENSG00000282608|ENST00000241356|ADORA3	ENSG00000282608|ENST00000241356|ADORA3	MULTI-SECPEP	OvCa9_classI_Rep3	3	530.2786865234375	2	530.291694	1058.56883	-0.55354	-0.00029354	1.8682	0.00099071	1.3147	0.00069717	530.2927380882787	95.12	1.0553	93.225	92.409	93.465	-1.8956					24	20	2	0	0	0	0.028476	1	6146	6146		49.211	0	1	13436			21664	9605	17692	17715	24031	24031					0.0418929687691616
IYLDTHFRL	9	Unmodified	_IYLDTHFRL_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;ZNFX1|p.V1053Afs*12|1|0.06|ENSG00000124201|chr20:49252778-49252779|-/TCTCGGCTCACTGCAACCACCG|frameshift_variant;nc|ENSG00000124201|Q9P2E3-2|ZNFX1;ZNFX1|p.S394Lfs*12|1|0.07|ENSG00000124201|chr20:49270633-49270634|-/ATGTGGCATATATACACCACGGAATACTATGCAGC|frameshift_variant;ZNFX1|p.R534Sfs*17|1|0.07|ENSG00000124201|chr20:49270210-49270211|-/TAGAAACCTAGAGTGAAGGCTCCGTCCCTTG|frameshift_variant	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	OvCa99_classI_Rep5	1	589.3232421875	2	589.321848	1176.62914	-0.65808	-0.00038782	-1.3455	-0.00079294	-2.0036	-0.0011808	589.320819696776	103.55	0.84243	103.55	103.22	104.06	0					58	19	4	0	0	0	0.1804	1	11580	11580		79.713	5.4575	1	1397900			21665	3631	17693	17716	24032	24032					0.04789407260000189
IYLEKLKTI	9	Unmodified	_IYLEKLKTI_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	OvCa99_classI_Rep5	1	560.85302734375	2	560.85245	1119.69035	3.0124	0.0016895	-1.0904	-0.00061153	1.922	0.001078	560.8517106705738	84.607	1.4463	84.607	84.303	85.75	0					86	34	4	0	0	0	0.0077394	2	8833	8833;8861		181.41	85.217	1	6923500			21666	7740	17694	17717	24033;24034	24033					0.13528919239411152
IYLFLLQE	8	Unmodified	_IYLFLLQE_					0	0	0			REV__ENSG00000112164|ENST00000373256|GLP1R	REV__ENSG00000112164|ENST00000373256|GLP1R	MULTI-MSMS	OvCa99_classI_Rep5	1	519.800048828125	2	519.797143	1037.57973	1.1843	0.00061559	-2.5231	-0.0013115	-1.3388	-0.00069589	519.7956796903255	138.23	0.71046	138.23	137.93	138.64	0					29	14	3	0	0	0	0.44269	1	16129	16129		83.287	0	1	269570	+		21667	18080	17695	17718	24035	24035					0.062446992512150246
IYLGERYTL	9	Unmodified	_IYLGERYTL_					0	0	0			REV__ENSG00000118520|ENST00000368087|ARG1	REV__ENSG00000118520|ENST00000368087|ARG1	MULTI-MSMS	OvCa99_classI_Rep5	1	564.3112182617188	2	564.308406	1126.60226	2.6265	0.0014821	-0.07045	-3.9756E-05	2.556	0.0014424	564.3081990649894	95.14	0.54628	95.14	94.905	95.451	0					30	12	3	0	0	0	0.33652	1	10367	10367		58.782	4.0056	1	2880400	+		21668	18405	17696	17719	24036	24036					0.04402298648801661
IYLGSKAGF	9	Unmodified	_IYLGSKAGF_					0	0	0		tr|A0A7D6ZGV9|A0A7D6ZGV9_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00330PE=4SV=1	tr|A0A7D6ZGV9|A0A7D6ZGV9_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00330PE=4SV=1	tr|A0A7D6ZGV9|A0A7D6ZGV9_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00330PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	478.2674255371094	2	478.26601	954.517468	1.7071	0.00081644	0.27918	0.00013352	1.9863	0.00094996	478.2659822244951	127.11	0.58218	127.11	126.73	127.32	0					25	12	3	0	0	0	0.34496	1	14694	14694		57.811	2.9167	1	559820			21669	35554	17697	17720	24037	24037					0.0383897290286086
IYLHGQLVKLP	11	Unmodified	_IYLHGQLVKLP_					0	0	0			REV__ENST00000394634.6_2_4:110687906-110723179:-|nuORF	REV__ENST00000394634.6_2_4:110687906-110723179:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	640.89013671875	2	640.889898	1279.76524	-0.17045	-0.00010924	0.2933	0.00018797	0.12285	7.8731E-05	640.8899760073222	130.96	1.1409	130.73	130.4	131.54	-0.22697					67	22	4	0	0	0	0.64273	1	12886	12886		40.778	13.731	1	368320	+		21670	25299	17698	17721	24038	24038					0.13655101770655165
IYLKGNCVEI	10	Unmodified	_IYLKGNCVEI_					0	0	0			REV__ENSG00000178093|ENST00000585580|TSSK6	REV__ENSG00000178093|ENST00000585580|TSSK6	MULTI-MSMS	OvCa99_classI_Rep5	1	576.3112182617188	2	576.310092	1150.60563	1.0803	0.00062259	1.4354	0.00082723	2.5157	0.0014498	576.310699445455	119.35	1.2024	119.35	119.1	120.3	0					73	28	3	0	0	0	0.35465	1	13756	13756		74.255	13.961	1	2923600	+		21671	22045	17699	17722	24039	24039					0.03635225431139588
IYLKINPVF	9	Unmodified	_IYLKINPVF_					0	0	0		ENST00000570088.1_1_16:85936621-85936909:+|nuORF	ENST00000570088.1_1_16:85936621-85936909:+|nuORF	ENST00000570088.1_1_16:85936621-85936909:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8302001953125	2	553.83406	1105.65357	-3.0788	-0.0017052	-4.2569	-0.0023576	-7.3358	-0.0040628	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.52083	3	11870	11730;11870;11939		40.573	10.069	1	308210			21672	13889	17700	17723	24040;24041;24042	24041					0.10496667413508476
IYLKLDRNRII	11	Unmodified	_IYLKLDRNRII_					0	0	0		ENSG00000186105|ENST00000334994|LRRC70	ENSG00000186105|ENST00000334994|LRRC70	ENSG00000186105|ENST00000334994|LRRC70	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.25701904296875	3	472.961033	1415.86127	1.7732	0.00083867	-2.3323	-0.0011031	-0.55912	-0.00026444	472.9598490037116	67.409	1.1784	63.919	63.59	64.769	-3.4902					45	23	3	0	0	0	0.026113	1	4973	4973		18.531	8.8849	1	95595			21673	8313	17701	17724	24043	24043					0.16997249610744802
IYLKLDRNRII	11	Unmodified	_IYLKLDRNRII_					0	0	0		ENSG00000186105|ENST00000334994|LRRC70	ENSG00000186105|ENST00000334994|LRRC70	ENSG00000186105|ENST00000334994|LRRC70	MULTI-MATCH	OvCa9_classI_Rep2	2		3	472.961033	1415.86127	0.72261	0.00034177	-1.2619	-0.00059685	-0.53933	-0.00025508	472.960358148114	66.104	1.1915	63.408	63.071	64.263	-2.6958	-0.28897	0.00090636	NaN	18.531	59	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89204			21674	8313	17701	17724							0.16997249610744802
IYLLDMFCN	9	Carbamidomethyl (C),Oxidation (M)	_IYLLDM(Oxidation (M))FC(Carbamidomethyl (C))N_	IYLLDMFC(1)N	IYLLDM(1)FCN	IYLLDMFC(56)N	IYLLDM(56)FCN	0	1	1		ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-MSMS	OvCa99_classI_Rep5	1	602.7734375	2	602.772485	1203.53042	1.5111	0.00091083	0.74468	0.00044887	2.2558	0.0013597	602.7726693765641	132.94	0.42291	132.94	132.75	133.17	0					20	8	3	0	0	0	0.36502	1	15456	15456		55.504	7.5447	1	343260			21675	4670	17702	17725	24044	24044	46	150			-0.06320700091555409
IYLLLFLVH	9	Unmodified	_IYLLLFLVH_					0	0	0		nc|ENSG00000008869|Q9P2D3-2|HEATR5B	nc|ENSG00000008869|Q9P2D3-2|HEATR5B	nc|ENSG00000008869|Q9P2D3-2|HEATR5B	MULTI-MSMS	OvCa99_classI_Rep5	1	565.8515014648438	2	565.852253	1129.68995	2.9597	0.0016748	-4.1765	-0.0023633	-1.2167	-0.00068849	565.8498593598298	86.476	0.82093	86.476	86.192	87.013	0					40	19	4	0	0	0	0.42921	1	9125	9125		49.211	0	1	1867600			21676	14861	17703	17726	24045	24045					0.1302954431021135
IYLLLIPWV	9	Unmodified	_IYLLLIPWV_					0	0	0		HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|160|3|anti-sense	HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|160|3|anti-sense	HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|160|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	565.3544921875	2	565.354628	1128.6947	1.546	0.00087404	-3.1945	-0.001806	-1.6485	-0.00093196	565.3527711373636	144.35	3.6923	144.35	143.76	147.45	0					246	75	7	0	0	0	0.53728	1	17044	17044		39.021	9.18	1	6070400			21677	14493	17704	17727	24046	24046					0.13550428452981578
IYLLNLAISN	10	Unmodified	_IYLLNLAISN_					0	0	0		ENST00000460855.5_1_3:42905994-42929044:+|nuORF;ENSG00000144648|ENST00000422265|ACKR2	ENST00000460855.5_1_3:42905994-42929044:+|nuORF	ENST00000460855.5_1_3:42905994-42929044:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3294677734375	2	567.331882	1132.64921	-2.3399	-0.0013275	-1.3687	-0.0007765	-3.7086	-0.002104	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.74374	1	14571	14571		25.574	1.0549	1	241060			21678	5169	17705	17728	24047	24047					0.0881915819995811
IYLLSQNRK	9	Unmodified	_IYLLSQNRK_					0	0	0			REV__ENST00000591790.5_1_19:56953420-56953624:-|nuORF	REV__ENST00000591790.5_1_19:56953420-56953624:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.326416015625	2	567.835123	1133.65569	2.1868	0.0012417	-0.24268	-0.0001378	1.9441	0.0011039	567.8349410977753	112.88	0.36195	112.88	112.7	113.06	0					13	7	2	0	0	0	0.027392	1	12839	12839		85.359	3.0545	1	112360	+		21679	27933	17706	17729	24048	24048					0.09421096151322672
IYLPIANVARI	11	Unmodified	_IYLPIANVARI_					0	0	0		ENSG00000120837|ENST00000240055|NFYB	ENSG00000120837|ENST00000240055|NFYB	ENSG00000120837|ENST00000240055|NFYB	MULTI-MSMS	OvCa99_classI_Rep5	1	621.8843994140625	2	621.882073	1241.74959	1.0042	0.00062452	1.0879	0.00067652	2.0921	0.001301	621.8825941276459	131	0.9476	131	130.68	131.62	0					46	19	4	0	0	0	0.41398	2	15213	15190;15213		60.118	26.197	1	699820			21680	3456	17707	17730	24049;24050	24050					0.13838815253598113
IYLPYLHEW	9	Unmodified	_IYLPYLHEW_					0	0	0		ENST00000543087.5_1_11:18512432-18536353:-|nuORF;ENSG00000074319|ENST00000251968|TSG101;ENST00000545247.6_1_11:18505612-18548363:-|nuORF	ENST00000543087.5_1_11:18512432-18536353:-|nuORF;ENST00000545247.6_1_11:18505612-18548363:-|nuORF	ENST00000543087.5_1_11:18512432-18536353:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	617.3203125	2	617.318774	1232.623	1.0816	0.00066769	0.81083	0.00050054	1.8924	0.0011682	617.3192644115452	131.17	2.0252	131.17	130.68	132.7	0					143	42	6	0	0	0	0.011548	5	15225	15205;15225;15250;15275;15317		163.84	78.929	1	14116000			21681	13486;13520	17708	17731	24051;24052;24053;24054;24055	24052					0.015988890284461377
IYLPYLQNW	9	Unmodified	_IYLPYLQNW_					0	0	0		nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD;ENST00000535340.5_1_11:18591643-18610207:-|nuORF;nc|ENSG00000151116|Q8IX04-5|UEVLD;nc|ENSG00000151116|Q8IX04-4|UEVLD;nc|ENSG00000151116|Q8IX04-3|UEVLD;nc|ENSG00000151116|Q8IX04-2|UEVLD	nc|ENSG00000151116|Q8IX04-6|UEVLD	nc|ENSG00000151116|Q8IX04-6|UEVLD	MULTI-MSMS	OvCa99_classI_Rep5	1	605.3209228515625	2	605.318774	1208.623	0.94666	0.00057303	0.93396	0.00056534	1.8806	0.0011384	605.3193382609761	159.01	1.2477	159.01	158.46	159.71	0					64	25	4	0	0	0	0.012163	4	18646	18623;18646;18671;18681		180.49	79.242	1	1542600			21682	5533	17709	17732	24056;24057;24058;24059	24057					0.02702889028455502
IYLRLLVKL	9	Unmodified	_IYLRLLVKL_					0	0	0		ENST00000552705.5_1_19:49119841-49122400:-|nuORF;ENST00000552347.5_1_19:49120227-49122400:-|nuORF;ENSG00000063177|ENST00000549920|RPL18	ENST00000552705.5_1_19:49119841-49122400:-|nuORF	ENST00000552705.5_1_19:49119841-49122400:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	565.8882446289062	2	565.886627	1129.7587	2.191	0.0012399	-0.14076	-7.9655E-05	2.0503	0.0011602	565.8864863983179	117.99	3.925	117.99	117.04	120.97	0					247	88	5	0	0	0	0.062324	11	13489	13467;13489;13513;13555;13596;13621;13645;13668;13693;13759;13789		111.65	37.674	1	7097300			21683	1286	17710	17733	24060;24061;24062;24063;24064;24065;24066;24067;24068;24069;24070	24061					0.19901208609940113
IYLSKSKLFI	10	Unmodified	_IYLSKSKLFI_					0	0	0			REV__ENST00000366514.4_1_1:246703990-246704098:-|nuORF	REV__ENST00000366514.4_1_1:246703990-246704098:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3696899414062	2	606.373549	1210.73255	-3.14	-0.001904	-3.377	-0.0020477	-6.517	-0.0039517	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.76627	1	14818	14818		23.042	5.6775	1	257720	+		21684	24878	17711	17734	24071	24071					0.13560894647798705
IYLSYTIDP	9	Unmodified	_IYLSYTIDP_					0	0	0			REV__nc|ENSG00000080644|P32297-3|CHRNA3	REV__nc|ENSG00000080644|P32297-3|CHRNA3	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.307373046875	2	542.78169	1083.54883	-0.12955	-7.0317E-05	0.39407	0.0002139	0.26453	0.00014358	542.7818139002371	69.08	1.6365	69.08	67.955	69.591	0					59	39	2	0	0	0	0.027448	1	6437	6437		63.306	0	1	941690	+		21685	17058	17712	17735	24072	24072					0.010395011462833281
IYLTKRML	8	Oxidation (M)	_IYLTKRM(Oxidation (M))L_		IYLTKRM(1)L		IYLTKRM(110)L	0	0	1		ENST00000263856.8_1_2:86732285-86732549:-|nuORF	ENST00000263856.8_1_2:86732285-86732549:-|nuORF	ENST00000263856.8_1_2:86732285-86732549:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	527.310302734375	2	527.309895	1052.60524	1.907	0.0010056	-3.0572	-0.0016121	-1.1502	-0.00060653	527.3081596889355	95.373	1.3446	95.373	95.033	96.378	0					93	31	4	0	0	0	0.29515	1	10447	10447		108.09	14.892	1	5503400			21686	9918	17713	17736	24073	24073		288			0.08103850501947818
IYLTLRIY	8	Unmodified	_IYLTLRIY_					0	0	0			REV__CAMK2B|p.Q624L|1|0.24|ENSG00000058404|chr7:44220192-44220192|T/A|missense_variant	REV__CAMK2B|p.Q624L|1|0.24|ENSG00000058404|chr7:44220192-44220192|T/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	527.818603515625	2	527.81841	1053.62227	0.15404	8.1304E-05	-0.13429	-7.0882E-05	0.019746	1.0422E-05	527.8180746611931	131.65	2.3091	131.42	131.15	133.46	-0.22696					124	46	4	0	0	0	0.62934	1	13008	13008		57.811	5.5121	1	610490	+		21687	15734	17714	17737	24074	24074					0.09760094379430484
IYLTLRIY	8	Unmodified	_IYLTLRIY_					0	0	0			REV__CAMK2B|p.Q624L|1|0.24|ENSG00000058404|chr7:44220192-44220192|T/A|missense_variant	REV__CAMK2B|p.Q624L|1|0.24|ENSG00000058404|chr7:44220192-44220192|T/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	527.8169555664062	2	527.81841	1053.62227	-0.62231	-0.00032847	1.4033	0.00074071	0.78103	0.00041224	527.8186129379317	132.72	1.4756	131.6	131.24	132.71	-1.1249					60	29	3	0	0	0	0.7224	1	10613	10613		38.806	0	1	124870	+		21688	15734	17714	17737	24075	24075					0.09760094379430484
IYLVGLVVGVY	11	Unmodified	_IYLVGLVVGVY_					0	0	0			REV__tr|A0A7D6VPT0|A0A7D6VPT0_9CLOTPrepilinpeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20235PE=3SV=1	REV__tr|A0A7D6VPT0|A0A7D6VPT0_9CLOTPrepilinpeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20235PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8555908203125	2	597.860275	1193.706	-2.4902	-0.0014888	-4.2057	-0.0025144	-6.6959	-0.0040032	597.8575960796461	144.35	4.0594	144.12	142.06	146.12	-0.22696					210	81	4	0	0	0	0.72486	1	14652	14652		17.365	3.2278	1	136500	+		21689	31272	17715	17738	24076	24076					0.11689205756488263
IYLVHVSVL	9	Unmodified	_IYLVHVSVL_					0	0	0			REV__ENST00000493442.1_1_X:103436847-103436937:+|nuORF	REV__ENST00000493442.1_1_X:103436847-103436937:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	521.8178100585938	2	521.81841	1041.62227	-0.45682	-0.00023838	-0.41175	-0.00021486	-0.86857	-0.00045324	521.8180401068441	115.68	1.6294	114.63	114.11	115.74	-1.0414					71	32	3	0	0	0	0.57242	1	8602	8602		35.201	1.6851	1	346620	+		21690	26705	17716	17739	24077	24077					0.10312094379423797
IYLYYLRLKR	10	Unmodified	_IYLYYLRLKR_					0	0	0		tr|A0A553ST10|A0A553ST10_NIACIBranched-chainaminoacidABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_03985PE=4SV=1	tr|A0A553ST10|A0A553ST10_NIACIBranched-chainaminoacidABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_03985PE=4SV=1	tr|A0A553ST10|A0A553ST10_NIACIBranched-chainaminoacidABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_03985PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.57958984375	3	467.618607	1399.83399	-0.69967	-0.00032718	2.8054	0.0013119	2.1058	0.00098469	467.9543198040159	37.368	0.50853	37.368	37.159	37.668	0					19	10	3	0	0	0	0.027241	1	2072	2072		24.519	19.377	1	138890			21691	34447	17717	17740	24078	24078					0.15006766070337108
IYMGMNHIL	9	Unmodified	_IYMGMNHIL_					0	0	0			REV__ENSG00000172057|ENST00000304046|ORMDL3	REV__ENSG00000172057|ENST00000304046|ORMDL3	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.6311645507812	2	546.272455	1090.53036	2.3834	0.001302	-0.7376	-0.00040293	1.6458	0.00089907	546.272073110186	86.252	0.47791	86.252	86.033	86.511	0					25	11	3	0	0	0	0.02721	1	9096	9096		85.359	16.573	1	1637900	+		21692	21670	17718	17741	24079	24079					-0.011286553009313138
IYMPYAQWL	9	Unmodified	_IYMPYAQWL_					0	0	0		nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-7|IFT122;nc|ENSG00000163913|Q9HBG6-8|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122;nc|ENSG00000163913|Q9HBG6-10|IFT122;nc|ENSG00000163913|Q9HBG6-9|IFT122;nc|ENSG00000163913|Q9HBG6-4|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	MULTI-MSMS	OvCa99_classI_Rep5	1	592.795654296875	2	592.794078	1183.5736	0.91222	0.00054076	1.8503	0.0010968	2.7625	0.0016376	592.7948023717507	158.33	0.83835	158.33	158.05	158.89	0					35	17	3	0	0	0	0.13154	1	18553	18553		88.643	11.325	1	218820			21693	6377	17719	17742	24080	24080					-0.010841422519661137
IYNALIEFI	9	Unmodified	_IYNALIEFI_					0	0	0		nc|ENSG00000113407|P26639-2|TARS1;ENSG00000113407|ENST00000265112|TARS1;ENST00000504698.1_1_5:33456142-33459991:+|nuORF	nc|ENSG00000113407|P26639-2|TARS1	nc|ENSG00000113407|P26639-2|TARS1	MULTI-MSMS	OvCa99_classI_Rep5	1	548.3084716796875	2	548.307875	1094.6012	1.1762	0.00064491	0.93265	0.00051138	2.1088	0.0011563	548.3082656962919	146.62	1.5165	146.62	146.18	147.69	0					77	30	4	0	0	0	0.31747	1	17132	17132		60.972	0	1	1380800			21694	14966	17720	17743	24081	24081					0.05768084279907271
IYNFPIHAF	9	Unmodified	_IYNFPIHAF_					0	0	0		ENSG00000198042|ENST00000360128|MAK16	ENSG00000198042|ENST00000360128|MAK16	ENSG00000198042|ENST00000360128|MAK16	MULTI-MSMS	OvCa99_classI_Rep5	1	561.2955932617188	2	561.292559	1120.57057	3.0876	0.0017331	0.38934	0.00021853	3.4769	0.0019516	561.292805296319	121.24	1.1621	121.24	120.92	122.08	0					69	25	5	0	0	0	0.11842	2	13939	13939;13963		92.191	16.573	1	757830			21695	8776	17721	17744	24082;24083	24082					0.01510350685521189
IYNGDMEKI	9	Unmodified	_IYNGDMEKI_					0	0	0		ENSG00000176171|ENST00000368636|BNIP3;BNIP3-ABI1|1|fusion;BNIP3-ABI1|2|fusion;BNIP3-ABI1|3|fusion;BNIP3-ABI1|8|fusion;BNIP3-ABI1|6|fusion;BNIP3-ABI1|4|fusion;BNIP3-ABI1|7|fusion;BNIP3-ABI1|5|fusion;ENST00000550043.1_1_14:28733783-28734191:+|nuORF	ENSG00000176171|ENST00000368636|BNIP3	ENSG00000176171|ENST00000368636|BNIP3	MULTI-MSMS	OvCa99_classI_Rep5	1	541.7640380859375	2	541.762975	1081.5114	0.13618	7.3777E-05	-0.4559	-0.00024699	-0.31972	-0.00017321	541.7625747129686	71.767	1.4503	71.767	71.427	72.877	0					87	35	4	0	0	0	0.046778	2	6946	6946;6978		120.87	13.861	1	17620000			21696	157	17722	17745	24084;24085	24084					-0.0260991339098382
IYNGKLFDLL	10	Unmodified	_IYNGKLFDLL_					0	0	0		KIF2C|p.V491Rfs*6|1|0.33|ENSG00000142945|chr1:44760383-44760384|GT/-|frameshift_variant;nc|ENSG00000142945|Q99661-2|KIF2C;ENSG00000142945|ENST00000372224|KIF2C	KIF2C|p.V491Rfs*6|1|0.33|ENSG00000142945|chr1:44760383-44760384|GT/-|frameshift_variant	KIF2C|p.V491Rfs*6|1|0.33|ENSG00000142945|chr1:44760383-44760384|GT/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	598.341552734375	2	598.339707	1194.66486	1.247	0.00074611	0.93042	0.00055671	2.1774	0.0013028	598.34006959486	132.68	0.94351	132.68	132.27	133.22	0					48	19	4	0	0	0	0.38315	2	15412	15412;15438		70.816	5.3508	1	692060			21697	5002	17723	17746	24086;24087	24086					0.0753144471698306
IYNGKVTSI	9	Unmodified	_IYNGKVTSI_					0	0	0		ENSG00000067596|ENST00000262415|DHX8;ENST00000587044.1_1_17:41568567-41594747:+|nuORF	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-MSMS	OvCa99_classI_Rep5	1	497.7829895019531	2	497.782025	993.549496	-1.1483	-0.00057162	0.64281	0.00031998	-0.50552	-0.00025164	497.78216157229036	65.818	0.62775	65.818	65.546	66.174	0					36	15	4	0	0	0	0.060996	1	6059	6059		112.41	29.124	1	2769600			21698	1377	17724	17747	24088	24088					0.052463405860066814
IYNHITTRV	9	Unmodified	_IYNHITTRV_					0	0	0		ADD1-FAM193A|2|fusion;ADD1-FAM193A|1|fusion;ADD1-FAM193A|3|fusion;ADD1-FAM193A|4|fusion;ENST00000509039.5_1_4:2877642-2901297:+|nuORF;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;nc|ENSG00000087274|P35611-5|ADD1;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ENST00000508684.5_1_4:2877642-2900342:+|nuORF;ENSG00000087274|ENST00000683351|ADD1	ADD1-FAM193A|2|fusion	ADD1-FAM193A|2|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	558.8135986328125	2	558.811648	1115.60874	0.062089	3.4696E-05	-0.027587	-1.5416E-05	0.034503	1.928E-05	558.8113878976952	53.927	0.81291	53.927	53.692	54.505	0					48	19	4	0	0	0	0.16264	1	4328	4328		82.75	0.50997	1	1725600			21699	37	17725	17748	24089	24089					0.055562366001595365
IYNKVTPTF	9	Unmodified	_IYNKVTPTF_					0	0	0		SPRED1|p.C418Nfs*10|1|0.04|ENSG00000166068|chr15:38351580-38351581|-/AACGTTCTCGC|frameshift_variant;ENSG00000166068|ENST00000299084|SPRED1	SPRED1|p.C418Nfs*10|1|0.04|ENSG00000166068|chr15:38351580-38351581|-/AACGTTCTCGC|frameshift_variant	SPRED1|p.C418Nfs*10|1|0.04|ENSG00000166068|chr15:38351580-38351581|-/AACGTTCTCGC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	541.7994384765625	2	541.797675	1081.5808	1.7558	0.0009513	0.60648	0.00032859	2.3623	0.0012799	541.7978198736363	80.765	0.80441	80.765	80.443	81.248	0					38	18	3	0	0	0	0.010652	1	8292	8292		166.68	51.184	1	2997200			21700	6633	17726	17749	24090	24090					0.04326913620070627
IYNKYWPLF	9	Unmodified	_IYNKYWPLF_					0	0	0		ENSG00000104660|ENST00000321250|LEPROTL1;nc|ENSG00000104660|O95214-2|LEPROTL1	ENSG00000104660|ENST00000321250|LEPROTL1	ENSG00000104660|ENST00000321250|LEPROTL1	MULTI-MSMS	OvCa99_classI_Rep5	1	622.331298828125	2	622.329142	1242.64373	0.62474	0.00038879	0.73208	0.00045559	1.3568	0.00084439	622.3294877822864	131.83	0.93044	131.83	131.48	132.41	0					48	19	4	0	0	0	0.083631	1	15329	15329		85.359	52.547	1	474610			21701	2383	17727	17750	24091	24091					0.03211479408105333
IYNQVKQII	9	Unmodified	_IYNQVKQII_					0	0	0		nc|ENSG00000075711|Q12959-8|DLG1;PAK2-DLG1|3|fusion;PAK2-DLG1|5|fusion;nc|ENSG00000075711|Q12959-7|DLG1;nc|ENSG00000075711|Q12959|DLG1;PAK2-DLG1|6|fusion;ENSG00000075711|ENST00000667157|DLG1;nc|ENSG00000075711|Q12959-6|DLG1;PAK2-DLG1|1|fusion;PAK2-DLG1|4|fusion;nc|ENSG00000075711|Q12959-9|DLG1;nc|ENSG00000075711|Q12959-3|DLG1;PAK2-DLG1|7|fusion;PAK2-DLG1|9|fusion;PAK2-DLG1|2|fusion;PAK2-DLG1|10|fusion;nc|ENSG00000075711|Q12959-5|DLG1;PAK2-DLG1|8|fusion;nc|ENSG00000075711|Q12959-2|DLG1	nc|ENSG00000075711|Q12959-8|DLG1	nc|ENSG00000075711|Q12959-8|DLG1	MULTI-MSMS	OvCa99_classI_Rep5	1	559.8344116210938	2	559.832049	1117.64954	2.5808	0.0014448	-0.34552	-0.00019343	2.2353	0.0012514	559.8316708776587	85.633	0.69106	85.633	85.422	86.113	0					39	16	3	0	0	0	0.037627	1	8994	8994		128.86	31.388	1	2308300			21702	1541	17728	17751	24092	24092					0.09542577919796713
IYNVFRNN	8	Unmodified	_IYNVFRNN_					0	0	0		ENST00000540779.1_1_12:122359430-122370014:+|nuORF;nc|ENSG00000158023|Q8TBY9-3|CFAP251;nc|ENSG00000158023|Q8TBY9-2|CFAP251;ENSG00000158023|ENST00000288912|CFAP251	ENST00000540779.1_1_12:122359430-122370014:+|nuORF	ENST00000540779.1_1_12:122359430-122370014:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.7448120117188	2	520.269616	1038.52468	0.18605	9.6794E-05	-2.3197	-0.0012069	-2.1337	-0.0011101	520.2692752669932	159.69	0.28918	159.69	159.62	159.91	0					6	5	2	0	0	0	0.028476	1	18711	18711		57.811	39.487	1	24046			21703	5926	17729	17752	24093	24093					0.006957055032899007
IYPAELNRI	9	Unmodified	_IYPAELNRI_					0	0	0			REV__CDC42BPB|p.S1423Ffs*2|1|0.11|ENSG00000198752|chr14:102944030-102944031|AG/-|frameshift_variant	REV__CDC42BPB|p.S1423Ffs*2|1|0.11|ENSG00000198752|chr14:102944030-102944031|AG/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	544.8116455078125	2	544.808574	1087.60259	1.4914	0.0008125	3.854	0.0020997	5.3453	0.0029122	544.8104944095314	130.2	1.192	130.2	129.77	130.96	0					64	24	4	0	0	0	0.27001	1	15111	15111		66.429	6.1353	1	829350	+		21704	15764	17730	17753	24094	24094					0.062297183686723656
IYPDRRLE	8	Unmodified	_IYPDRRLE_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1;ENST00000358133.5_1_1:11994791-12014648:+|nuORF	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MSMS	OvCa99_classI_Rep5	1	531.293212890625	2	531.290548	1060.56654	1.9247	0.0010226	-0.70506	-0.00037459	1.2196	0.00064797	531.2903293964418	87.278	3.4509	87.278	86.931	90.382	0					264	83	6	0	0	0	0.53252	1	9395	9395		74.255	0	1	200480000			21705	1691	17731	17754	24095	24095					0.03868261191814781
IYPEPAQAII	10	Unmodified	_IYPEPAQAII_					0	0	0			REV__ENST00000526149.1_1_16:66586582-66592272:+|nuORF	REV__ENST00000526149.1_1_16:66586582-66592272:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	557.8113403320312	2	557.810782	1113.60701	-1.5435	-0.00086096	1.4622	0.00081564	-0.081249	-4.5322E-05	557.8114782865623	144.9	1.3416	144.68	144.34	145.68	-0.22696					84	26	5	0	0	0	0.762	1	14658	14658		23.523	0.48021	1	532460	+		21706	23327	17732	17755	24096	24096					0.05475182791565203
IYPEVVHMF	9	Unmodified	_IYPEVVHMF_					0	0	0		nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;RCOR1-PPP2R5C|2|fusion;ENSG00000078304|ENST00000694906|PPP2R5C;RCOR1-PPP2R5C|3|fusion;RCOR1-PPP2R5C|1|fusion;ENST00000553730.5_1_14:102276279-102348623:+|nuORF	nc|ENSG00000078304|Q13362-2|PPP2R5C	nc|ENSG00000078304|Q13362-2|PPP2R5C	MULTI-MSMS	OvCa99_classI_Rep5	1	567.787109375	2	567.786253	1133.55795	1.8479	0.0010492	-0.35372	-0.00020084	1.4942	0.00084837	567.7859259939704	116.93	1.0546	116.93	116.6	117.65	0					73	22	4	0	0	0	0.043206	3	13393	13371;13393;13417		123.99	79.612	1	6669500			21707	1592	17733	17756	24097;24098;24099	24098					-0.0034842876902985154
IYPHGLVLL	9	Unmodified	_IYPHGLVLL_					0	0	0		ENSG00000102172|ENST00000404933|SMS;ENST00000454078.1_1_6:71318605-71318935:-|nuORF	ENSG00000102172|ENST00000404933|SMS	ENSG00000102172|ENST00000404933|SMS	MULTI-MSMS	OvCa99_classI_Rep5	1	512.8130493164062	2	512.813128	1023.6117	1.7986	0.00092235	-0.099314	-5.093E-05	1.6993	0.00087142	512.8129755872772	117.25	2.0019	117.25	116.86	118.86	0					98	42	4	0	0	0	0.32242	1	13412	13412		60.404	0.10967	1	1729600			21708	2226	17734	17757	24100	24100					0.10084111724984268
IYPMIGMALI	10	Oxidation (M)	_IYPM(Oxidation (M))IGMALI_		IYPM(1)IGMALI		IYPM(39)IGM(-39)ALI	0	0	1			REV__tr|A0A553SH92|A0A553SH92_NIACIProteintranslocasesubunitSecYOS=NialliacirculansOX=1397GN=secYPE=3SV=1	REV__tr|A0A553SH92|A0A553SH92_NIACIProteintranslocasesubunitSecYOS=NialliacirculansOX=1397GN=secYPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	569.3082275390625	2	569.305964	1136.59737	-0.075115	-4.2763E-05	0.43979	0.00025037	0.36467	0.00020761	569.3061195246104	105.02	1.1257	105.02	104.58	105.7	0					81	25	4	0	0	0	0.4178	1	11845	11845		65.897	7.1155	2	8871400	+		21709	29784	17735	17758	24101	24101		654			0.034539551901616505
IYPPINVL	8	Unmodified	_IYPPINVL_					0	0	0		chr2:70963261-70963572|379|12.15|0.48|4.67|+|ENST00000412314|ATP6V1B1,VAX2;ENSG00000147416|ENST00000276390|ATP6V1B2;ENSG00000116039|ENST00000234396|ATP6V1B1;MPHOSPH10-ATP6V1B1|1|fusion	chr2:70963261-70963572|379|12.15|0.48|4.67|+|ENST00000412314|ATP6V1B1,VAX2	chr2:70963261-70963572|379|12.15|0.48|4.67|+|ENST00000412314|ATP6V1B1,VAX2	MULTI-MSMS	OvCa99_classI_Rep5	1	464.7796325683594	2	464.778754	927.542954	2.0172	0.00093755	0.43799	0.00020357	2.4552	0.0011411	464.7788431718824	134.28	0.93726	134.28	133.63	134.56	0					43	19	3	0	0	0	0.60486	1	15594	15594		62.978	18.447	1	148990			21710	446	17736	17759	24102	24102					0.07628447425292961
IYPPINVLPSL	11	Unmodified	_IYPPINVLPSL_					0	0	0		chr2:70963261-70963572|379|12.15|0.48|4.67|+|ENST00000412314|ATP6V1B1,VAX2;ENSG00000147416|ENST00000276390|ATP6V1B2;ENSG00000116039|ENST00000234396|ATP6V1B1;MPHOSPH10-ATP6V1B1|1|fusion	chr2:70963261-70963572|379|12.15|0.48|4.67|+|ENST00000412314|ATP6V1B1,VAX2	chr2:70963261-70963572|379|12.15|0.48|4.67|+|ENST00000412314|ATP6V1B1,VAX2	MSMS	OvCa99_classI_Rep5	1	613.3638916015625	2	613.363182	1224.71181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	158.83	1	158.83	158.33	159.33	0								0	0	0	2.9086E-05	1	18614	18614		124.08	35.903	1				21711	446	17737	17760	24103	24103					0.10844304268152882
IYPPINVLPSL	11	Unmodified	_IYPPINVLPSL_					0	0	0		chr2:70963261-70963572|379|12.15|0.48|4.67|+|ENST00000412314|ATP6V1B1,VAX2;ENSG00000147416|ENST00000276390|ATP6V1B2;ENSG00000116039|ENST00000234396|ATP6V1B1;MPHOSPH10-ATP6V1B1|1|fusion	chr2:70963261-70963572|379|12.15|0.48|4.67|+|ENST00000412314|ATP6V1B1,VAX2	chr2:70963261-70963572|379|12.15|0.48|4.67|+|ENST00000412314|ATP6V1B1,VAX2	MSMS	OvCa99_classI_Rep5	1	613.364501953125	2	613.363182	1224.71181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	158.94	1	158.94	158.44	159.44	0								0	0	0	0.060009	1	18627	18627		75.043	27.386	1				21712	446	17737	17760	24104	24104					0.10844304268152882
IYPPINVLPSL	11	Unmodified	_IYPPINVLPSL_					0	0	0		chr2:70963261-70963572|379|12.15|0.48|4.67|+|ENST00000412314|ATP6V1B1,VAX2;ENSG00000147416|ENST00000276390|ATP6V1B2;ENSG00000116039|ENST00000234396|ATP6V1B1;MPHOSPH10-ATP6V1B1|1|fusion	chr2:70963261-70963572|379|12.15|0.48|4.67|+|ENST00000412314|ATP6V1B1,VAX2	chr2:70963261-70963572|379|12.15|0.48|4.67|+|ENST00000412314|ATP6V1B1,VAX2	MSMS	OvCa99_classI_Rep5	1	613.3642578125	2	613.363182	1224.71181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	159.03	1	159.03	158.53	159.53	0								0	0	0	0.0019495	1	18638	18638		101.25	35.355	1				21713	446	17737	17760	24105	24105					0.10844304268152882
IYPPINVLPSL	11	Unmodified	_IYPPINVLPSL_					0	0	0		chr2:70963261-70963572|379|12.15|0.48|4.67|+|ENST00000412314|ATP6V1B1,VAX2;ENSG00000147416|ENST00000276390|ATP6V1B2;ENSG00000116039|ENST00000234396|ATP6V1B1;MPHOSPH10-ATP6V1B1|1|fusion	chr2:70963261-70963572|379|12.15|0.48|4.67|+|ENST00000412314|ATP6V1B1,VAX2	chr2:70963261-70963572|379|12.15|0.48|4.67|+|ENST00000412314|ATP6V1B1,VAX2	MSMS	OvCa99_classI_Rep5	1	613.3641967773438	2	613.363182	1224.71181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	159.22	1	159.22	158.72	159.72	0								0	0	0	6.3412E-05	1	18662	18662		117.81	51.382	1				21714	446	17737	17760	24106	24106					0.10844304268152882
IYPPINVLPSL	11	Unmodified	_IYPPINVLPSL_					0	0	0		chr2:70963261-70963572|379|12.15|0.48|4.67|+|ENST00000412314|ATP6V1B1,VAX2;ENSG00000147416|ENST00000276390|ATP6V1B2;ENSG00000116039|ENST00000234396|ATP6V1B1;MPHOSPH10-ATP6V1B1|1|fusion	chr2:70963261-70963572|379|12.15|0.48|4.67|+|ENST00000412314|ATP6V1B1,VAX2	chr2:70963261-70963572|379|12.15|0.48|4.67|+|ENST00000412314|ATP6V1B1,VAX2	MSMS	OvCa99_classI_Rep5	1	613.3641357421875	2	613.363182	1224.71181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	159.41	1	159.41	158.91	159.91	0								0	0	0	0.097863	1	18685	18685		67.494	18.052	1				21715	446	17737	17760	24107	24107					0.10844304268152882
IYPPINVLPSL	11	Unmodified	_IYPPINVLPSL_					0	0	0		chr2:70963261-70963572|379|12.15|0.48|4.67|+|ENST00000412314|ATP6V1B1,VAX2;ENSG00000147416|ENST00000276390|ATP6V1B2;ENSG00000116039|ENST00000234396|ATP6V1B1;MPHOSPH10-ATP6V1B1|1|fusion	chr2:70963261-70963572|379|12.15|0.48|4.67|+|ENST00000412314|ATP6V1B1,VAX2	chr2:70963261-70963572|379|12.15|0.48|4.67|+|ENST00000412314|ATP6V1B1,VAX2	MSMS	OvCa99_classI_Rep5	1	613.3635864257812	2	613.363182	1224.71181	NaN	NaN	NaN	NaN	NaN	NaN	NaN	159.46	1	159.46	158.96	159.96	0								0	0	0	0.12653	1	18691	18691		61.691	8.7546	1				21716	446	17737	17760	24108	24108					0.10844304268152882
IYPPKLHQF	9	Unmodified	_IYPPKLHQF_					0	0	0		chr19:29812776-29812978|402|19.78|0.44|5.5|+|ENST00000575243|CCNE1,CCNE1;chr19:29821817-29822240|415|28.89|0.48|5.91|+|ENST00000576532|CCNE1,CCNE1;nc|ENSG00000105173|P24864-2|CCNE1;nc|ENSG00000105173|P24864-3|CCNE1;ENSG00000105173|ENST00000262643|CCNE1;chr19:29817541-29821722|311|18.29|0.35|5.72|+|0|CCNE1,CCNE1|1	chr19:29812776-29812978|402|19.78|0.44|5.5|+|ENST00000575243|CCNE1,CCNE1	chr19:29812776-29812978|402|19.78|0.44|5.5|+|ENST00000575243|CCNE1,CCNE1	MULTI-MSMS	OvCa99_classI_Rep5	1	571.8233032226562	2	571.821484	1141.62842	0.10677	6.1051E-05	-0.10574	-6.0466E-05	0.0010221	5.8444E-07	571.8214194480303	73.66	5.2921	73.66	72.842	78.134	0					327	131	5	0	0	0	0.13482	3	7234	7204;7234;7264		87.754	32.25	1	98438000			21717	409	17738	17761	24109;24110;24111	24110					0.0632661261092835
IYPQNRLDP	9	Unmodified	_IYPQNRLDP_					0	0	0			REV__ENST00000587856.1_1_17:43324211-43324334:+|nuORF	REV__ENST00000587856.1_1_17:43324211-43324334:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.793701171875	2	558.29583	1114.57711	-0.062387	-3.4831E-05	-0.25328	-0.00014141	-0.31567	-0.00017624	558.2958757296464	54.555	0.29691	54.555	54.378	54.675	0					11	6	2	0	0	0	0.027418	1	4388	4388		40.778	0	1	259490	+		21718	27881	17739	17762	24112	24112					0.024402438462402642
IYPQVLHSL	9	Unmodified	_IYPQVLHSL_					0	0	0		RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.T5031Rfs*29|1|0.06|ENSG00000173821|chr17:80389261-80389262|-/TCGG|frameshift_variant;RNF213|p.G5057Vfs*8|1|0.18|ENSG00000173821|chr17:80389340-80389340|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	535.3079833984375	2	535.305667	1068.59678	2.4155	0.001293	-0.31766	-0.00017004	2.0978	0.001123	535.3053948129585	100.55	1.125	100.55	100.15	101.27	0					73	26	5	0	0	0	0.059253	2	11134	11134;11164		113.41	31.171	1	9166400			21719	7416	17740	17763	24113;24114	24113					0.06522619856991696
IYPSIFHVL	9	Unmodified	_IYPSIFHVL_					0	0	0		nc|ENSG00000177058|Q8NBW4-4|SLC38A9;nc|ENSG00000177058|Q8NBW4-3|SLC38A9;ENSG00000177058|ENST00000396865|SLC38A9	nc|ENSG00000177058|Q8NBW4-4|SLC38A9	nc|ENSG00000177058|Q8NBW4-4|SLC38A9	MULTI-MSMS	OvCa99_classI_Rep5	1	544.8108520507812	2	544.810585	1087.60662	1.4914	0.0008125	0.16208	8.8304E-05	1.6534	0.00090081	544.8104944095314	130.2	1.192	130.2	129.77	130.96	0					64	24	4	0	0	0	0.42057	1	15090	15090		50.025	2.3672	1	829350			21720	7654	17741	17764	24115	24115					0.06631807862390815
IYPSKWIARL	10	Unmodified	_IYPSKWIARL_					0	0	0		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;ENST00000569930.1_1_16:2133412-2138608:+|nuORF	nc|ENSG00000103197|P49815-7|TSC2	nc|ENSG00000103197|P49815-7|TSC2	MULTI-MSMS	OvCa99_classI_Rep5	1	623.8706665039062	2	623.868966	1245.72338	2.1032	0.0013121	0.2148	0.00013401	2.318	0.0014461	623.8688003878757	95.111	0.93382	95.111	94.604	95.538	0					42	21	4	0	0	0	0.45822	1	10369	10369		60.118	3.6845	1	1084700			21721	2293	17742	17765	24116	24116					0.11034546082123597
IYPTTYVQF	9	Unmodified	_IYPTTYVQF_					0	0	0		ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	ENSG00000179820|ENST00000391770|MYADM	MULTI-MSMS	OvCa99_classI_Rep5	1	566.2909545898438	2	566.289682	1130.56481	1.9547	0.0011069	0.071143	4.0288E-05	2.0259	0.0011472	566.2895894011258	125.38	1.6693	125.38	125.11	126.78	0					86	38	4	0	0	0	0.045281	2	14479	14479;14505		122.18	42.725	1	4144300			21722	7842	17743	17766	24117;24118	24117					0.004752073831923553
IYPVDLGDKF	10	Unmodified	_IYPVDLGDKF_					0	0	0		nc|ENSG00000163882|P52434-5|POLR2H;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-2|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;nc|ENSG00000163882|P52434-4|POLR2H	nc|ENSG00000163882|P52434-5|POLR2H	nc|ENSG00000163882|P52434-5|POLR2H	MULTI-MSMS	OvCa99_classI_Rep5	1	583.8092651367188	2	583.808239	1165.60193	1.7274	0.0010085	0.03135	1.8302E-05	1.7588	0.0010268	583.8083051536206	110.81	1.2048	110.81	110.4	111.6	0					57	26	3	0	0	0	0.30325	1	12583	12583		80.455	8.5771	1	1492300			21723	6373	17744	17767	24119	24119					0.02574878928930957
IYPVNAISF	9	Unmodified	_IYPVNAISF_					0	0	0		ENST00000481952.1_1_10:124921781-124922345:+|nuORF;nc|ENSG00000154473|O43684-2|BUB3;ENSG00000154473|ENST00000368865|BUB3;BUB3|p.E232G|1|0.15|ENSG00000154473|chr10:123162354-123162354|A/G|missense_variant	ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENST00000481952.1_1_10:124921781-124922345:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	512.28076171875	2	512.279118	1022.54368	1.9912	0.0010201	0.19916	0.00010203	2.1904	0.0011221	512.2792441503374	133.92	0.61928	133.92	133.67	134.29	0					37	12	4	0	0	0	0.22621	1	15598	15598		71.877	18.941	1	290530			21724	5739	17745	17768	24120	24120					0.03331242074318652
IYPWVHVVI	9	Unmodified	_IYPWVHVVI_					0	0	0		ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3	ENSG00000163755|ENST00000296051|HPS3	ENSG00000163755|ENST00000296051|HPS3	MULTI-MSMS	OvCa99_classI_Rep5	1	563.327880859375	2	563.326402	1124.63825	2.0656	0.0011636	-0.2384	-0.0001343	1.8272	0.0010293	563.326162419174	129.89	3.2488	129.89	129.31	132.56	0					173	68	5	0	0	0	0.054534	2	15069	15046;15069		116.12	47.335	1	5166000			21725	6357	17746	17769	24121;24122	24122					0.0809180061630741
IYPYIRTLL	9	Unmodified	_IYPYIRTLL_					0	0	0		nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8;ENST00000492449.5_1_3:184603882-184769810:+|nuORF	nc|ENSG00000156931|Q8N3P4-2|VPS8	nc|ENSG00000156931|Q8N3P4-2|VPS8	MULTI-MSMS	OvCa99_classI_Rep5	1	576.3455810546875	2	576.344792	1150.67503	2.1666	0.0012487	0.18951	0.00010922	2.3561	0.001358	576.3447740867039	121.6	0.97573	121.6	121.25	122.22	0					62	20	4	0	0	0	0.22621	1	14007	14007		71.877	13.096	1	597340			21726	5864	17747	17770	24123	24123					0.1057205244223951
IYPYVIQEL	9	Unmodified	_IYPYVIQEL_					0	0	0		ENSG00000178741|ENST00000322347|COX5A	ENSG00000178741|ENST00000322347|COX5A	ENSG00000178741|ENST00000322347|COX5A	MULTI-MSMS	OvCa99_classI_Rep5	1	569.3161010742188	2	569.313158	1136.61176	1.3771	0.00078403	-0.029948	-1.705E-05	1.3472	0.00076698	569.3127965688578	138.59	1.1573	138.59	138.11	139.27	0					47	23	3	0	0	0	0.29717	1	16177	16177		63.306	6.5852	1	297710			21727	7771	17748	17771	24124	24124					0.04892066934326067
IYQDVTLKW	9	Unmodified	_IYQDVTLKW_					0	0	0		nc|ENSG00000122507|Q3SYG4-6|BBS9;nc|ENSG00000122507|Q3SYG4-2|BBS9;nc|ENSG00000122507|Q3SYG4-4|BBS9;nc|ENSG00000122507|Q3SYG4-7|BBS9;nc|ENSG00000122507|Q3SYG4-3|BBS9;ENSG00000122507|ENST00000242067|BBS9;nc|ENSG00000122507|Q3SYG4-5|BBS9	nc|ENSG00000122507|Q3SYG4-6|BBS9	nc|ENSG00000122507|Q3SYG4-6|BBS9	MULTI-MSMS	OvCa99_classI_Rep5	1	583.3172607421875	2	583.316232	1164.61791	0.64233	0.00037468	1.3553	0.00079059	1.9977	0.0011653	583.3167613879588	105.67	1.0937	105.67	105.44	106.54	0					54	24	4	0	0	0	0.027568	2	11874	11874;11900		138.06	31.055	1	2697100			21728	3536	17749	17772	24125;24126	24125					0.042185851658587126
IYQEEEMPE	9	Unmodified	_IYQEEEMPE_					0	0	0		ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.8126220703125	2	584.247354	1166.48016	1.7973	0.0010501	-3.3448	-0.0019542	-1.5474	-0.00090408	584.747399723429	93.843	0.29298	93.843	93.714	94.007	0					8	6	2	0	0	0	0.027461	1	10216	10216		49.442	5.0644	1	175030			21729	3720	17750	17773	24127	24127					-0.09642531215740746
IYQERRQVL	9	Unmodified	_IYQERRQVL_					0	0	0		tr|A0A553SGI3|A0A553SGI3_NIACIPLP-dependentaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10925PE=3SV=1	tr|A0A553SGI3|A0A553SGI3_NIACIPLP-dependentaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10925PE=3SV=1	tr|A0A553SGI3|A0A553SGI3_NIACIPLP-dependentaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10925PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	402.23175048828125	3	402.231412	1203.67241	1.4458	0.00058156	-1.6185	-0.00065102	-0.17268	-6.9459E-05	402.2307908221868	32.868	1.0296	32.868	32.651	33.681	0					60	20	4	0	0	0	0.1804	1	1480	1480		79.713	12.219	1	4982100			21730	33160	17751	17774	24128	24128					0.07871597037296851
IYQGSSTQYI	10	Unmodified	_IYQGSSTQYI_					0	0	0			REV__ENSG00000123268|ENST00000262053|ATF1	REV__ENSG00000123268|ENST00000262053|ATF1	MULTI-MSMS	OvCa99_classI_Rep5	1	580.288330078125	2	580.285128	1158.5557	1.2903	0.00074874	3.2706	0.0018979	4.5609	0.0026466	580.2867305562305	133.35	0.63725	133.35	133.04	133.67	0					33	13	3	0	0	0	0.32926	1	15520	15520		77.318	22.541	1	261960	+		21731	18388	17752	17775	24129	24129					-0.017231859731282384
IYQKAFDLI	9	Unmodified	_IYQKAFDLI_					0	0	0		ENSG00000114030|ENST00000344337|KPNA1;KPNA6|p.E517Dfs*11|1|0.17|ENSG00000025800|chr1:32170833-32170834|AA/-|frameshift_variant;ENSG00000025800|ENST00000373625|KPNA6;KHDRBS1-KPNA6|1|fusion;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000114030|ENST00000344337|KPNA1	MULTI-MSMS	OvCa99_classI_Rep5	1	555.815185546875	2	555.813325	1109.6121	2.0876	0.0011603	0.02602	1.4462E-05	2.1136	0.0011748	555.8131603527708	108.65	1.8532	108.65	108.32	110.18	0					87	41	4	0	0	0	0.022645	3	12275	12275;12298;12326		143.89	18.073	1	5999300			21732	3008;8657	17753	17776	24130;24131;24132	24130					0.061674866541807205
IYQKAFEHL	9	Unmodified	_IYQKAFEHL_					0	0	0		ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4;nc|ENSG00000140463|Q96RK4-3|BBS4	ENSG00000140463|ENST00000268057|BBS4	ENSG00000140463|ENST00000268057|BBS4	MULTI-MSMS	OvCa99_classI_Rep5	1	574.8093872070312	2	574.808574	1147.60259	0.51515	0.00029611	-0.8493	-0.00048818	-0.33415	-0.00019207	574.808011259988	67.035	1.987	67.035	66.619	68.606	0					118	49	5	0	0	0	0.0086488	3	6230	6230;6256;6287		176.09	74.486	1	18463000			21733	4842	17754	17777	24133;24134;24135	24133					0.03469718368660324
IYQKPFQTL	9	Unmodified	_IYQKPFQTL_					0	0	0		nc|ENSG00000119787|Q8NHH9-5|ATL2;nc|ENSG00000119787|Q8NHH9-4|ATL2;nc|ENSG00000119787|Q8NHH9-2|ATL2;ENSG00000119787|ENST00000378954|ATL2;nc|ENSG00000119787|Q8NHH9-3|ATL2	nc|ENSG00000119787|Q8NHH9-5|ATL2	nc|ENSG00000119787|Q8NHH9-5|ATL2	MULTI-MSMS	OvCa99_classI_Rep5	1	569.3192138671875	2	569.318774	1136.623	1.0794	0.00061451	0.83241	0.0004739	1.9118	0.0010884	569.3191928792228	83.345	0.59546	83.345	83.161	83.757	0					24	13	2	0	0	0	0.025955	1	8676	8676		139.97	32.963	1	1522100			21734	3396	17755	17778	24136	24136					0.06014889028483594
IYQKVRHRL	9	Unmodified	_IYQKVRHRL_					0	0	0		nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENSG00000143093|ENST00000369795|STRIP1;ENST00000485775.5_1_1:110582506-110596531:+|nuORF	nc|ENSG00000143093|Q5VSL9-2|STRIP1	nc|ENSG00000143093|Q5VSL9-2|STRIP1	MULTI-MSMS	OvCa99_classI_Rep5	1	404.9158020019531	3	404.915646	1211.72511	1.3398	0.00054253	-1.7272	-0.00069936	-0.38732	-0.00015683	404.91501495046697	32.56	2.0482	32.56	32.303	34.351	0					115	41	5	0	0	0	0.59259	1	1444	1444		32.812	0.061884	1	5436000			21735	5010	17756	17779	24137	24137					0.12771599890766083
IYQKYIARF	9	Unmodified	_IYQKYIARF_					0	0	0		ENST00000496432.6_1_1:10713095-10754402:-|nuORF;nc|ENSG00000130940|Q86V15-2|CASZ1;ENSG00000130940|ENST00000377022|CASZ1	ENST00000496432.6_1_1:10713095-10754402:-|nuORF	ENST00000496432.6_1_1:10713095-10754402:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	601.3412475585938	2	601.340041	1200.66553	0.59079	0.00035526	0.2195	0.00013199	0.81029	0.00048726	601.3400006744629	73.896	1.3643	73.896	73.597	74.962	0					70	34	4	0	0	0	0.075543	2	7266	7266;7298		99.375	50.238	1	6395200			21736	4027	17757	17780	24138;24139	24138					0.07322284156703063
IYQMLKNLL	9	Unmodified	_IYQMLKNLL_					0	0	0		ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	MULTI-MSMS	OvCa99_classI_Rep5	1	568.8333740234375	2	568.330827	1134.6471	1.3997	0.00079551	0.55853	0.00031743	1.9583	0.0011129	568.3307741430809	123.32	0.96943	123.32	122.91	123.87	0					39	20	3	0	0	0	0.22961	2	14206	14206;14229		71.296	12.514	1	249000			21737	2769	17758	17781	24140;24141	24140					0.08516406190506132
IYQRDPLKL	9	Unmodified	_IYQRDPLKL_					0	0	0		ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF;STAT6|p.E106Tfs*19|1|0.22|ENSG00000166888|chr12:57107235-57107254|TCCATAACAGCTTTTTTCTC/-|frameshift_variant;STAT6|p.K107Nfs*25|1|0.34|ENSG00000166888|chr12:57107249-57107250|-/G|frameshift_variant	ENSG00000166888|ENST00000300134|STAT6	ENSG00000166888|ENST00000300134|STAT6	MULTI-MSMS	OvCa99_classI_Rep5	1	573.3390502929688	2	573.337498	1144.66044	-0.36083	-0.00020688	0.45276	0.00025959	0.091935	5.271E-05	573.3377454780668	71.372	2.2453	71.372	71.031	73.276	0					141	55	5	0	0	0	0.060996	3	6904	6877;6904;6934		112.41	10.81	1	49267000			21738	6730	17759	17782	24142;24143;24144	24143					0.0938998029407685
IYQRDPSL	8	Unmodified	_IYQRDPSL_					0	0	0			REV__nc|ENSG00000012504|Q96RI1-5|NR1H4	REV__nc|ENSG00000012504|Q96RI1-5|NR1H4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.7920227050781	2	496.263999	990.513445	-0.19967	-9.9088E-05	-0.055774	-2.7679E-05	-0.25544	-0.00012677	496.2638578459873	98.682	1.2912	96.304	96.022	97.313	-2.3786					61	24	4	0	0	0	0.028476	1	8754	8754		23.042	3.6825	1	342700	+		21739	16496	17760	17783	24145	24145					0.01780883409139733
IYQRHVYNL	9	Unmodified	_IYQRHVYNL_					0	0	0		ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209;nc|ENSG00000146842|Q96SK2-3|TMEM209	ENSG00000146842|ENST00000397622|TMEM209	ENSG00000146842|ENST00000397622|TMEM209	MULTI-MSMS	OvCa99_classI_Rep5	1	603.32763671875	2	603.324922	1204.63529	0.41075	0.00024782	-0.94715	-0.00057144	-0.53639	-0.00032362	603.3243151647665	57.671	1.1346	57.671	57.396	58.53	0					46	26	2	0	0	0	0.03923	1	4846	4846		99.375	31.881	1	7594100			21740	5310	17761	17784	24146	24146					0.04115925491510097
IYQRWKDLL	9	Unmodified	_IYQRWKDLL_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	MULTI-MSMS	OvCa99_classI_Rep5	1	618.3541259765625	2	617.850773	1233.68699	1.4675	0.00090672	0.15276	9.4381E-05	1.6203	0.0010011	617.8507083551682	93.635	0.62473	93.635	93.426	94.051	0					28	14	3	0	0	0	0.1149	1	10166	10166		93.143	7.7838	1	1124400			21741	7677	17762	17785	24147	24147					0.0794966918542741
IYQYEKLSKQE	11	Unmodified	_IYQYEKLSKQE_					0	0	0		tr|A0A553SR92|A0A553SR92_NIACIROKfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_00645PE=3SV=1	tr|A0A553SR92|A0A553SR92_NIACIROKfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_00645PE=3SV=1	tr|A0A553SR92|A0A553SR92_NIACIROKfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_00645PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.7843322753906	3	476.917158	1427.72965	-1.3497	-0.00064371	2.4814	0.0011834	1.1316	0.00053969	477.2527585122077	52.578	0.73961	49.765	49.345	50.085	-2.8129					19	14	2	0	0	0	0.026068	1	3511	3511		27.644	9.1129	1	18553			21742	34236	17763	17786	24148	24148					0.03288974732322458
IYRCRASGI	9	Unmodified	_IYRCRASGI_					0	0	0		ENST00000543968.5_1_9:37521875-37532049:-|nuORF;nc|ENSG00000147912|Q9UK96-2|FBXO10;ENST00000541804.1_1_9:37512546-37588833:-|nuORF;ENSG00000147912|ENST00000432825|FBXO10	ENST00000543968.5_1_9:37521875-37532049:-|nuORF	ENST00000543968.5_1_9:37521875-37532049:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	520.2808837890625	2	519.779293	1037.54403	0.28124	0.00014618	-4.1971	-0.0021816	-3.9159	-0.0020354	519.7770154924395	151.8	0.61282	151.8	151.5	152.12	0					32	12	3	0	0	0	0.50149	1	17806	17806		42.396	1.618	1	220330			21743	5381	17764	17787	24149	24149					0.0267633852254221
IYRFRLFL	8	Unmodified	_IYRFRLFL_					0	0	0			REV__nc|ENSG00000085433|O94967-2|WDR47	REV__nc|ENSG00000085433|O94967-2|WDR47	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.8264770507812	2	564.339844	1126.66514	1.6157	0.00091179	-4.4177	-0.0024931	-2.802	-0.0015813	564.3372062469197	146.09	0.54929	146.09	145.78	146.33	0					18	10	2	0	0	0	0.028476	1	17091	17091		26.796	9.4311	1	40766	+		21744	28743	17765	17788	24150	24150					0.10686909227501928
IYRHESLL	8	Unmodified	_IYRHESLL_					0	0	0		ENST00000533629.5_1_11:65144527-65149406:-|nuORF;nc|ENSG00000162241|Q8N413-2|SLC25A45;ENSG00000162241|ENST00000398802|SLC25A45	ENST00000533629.5_1_11:65144527-65149406:-|nuORF	ENST00000533629.5_1_11:65144527-65149406:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	515.79296875	2	515.787641	1029.56073	1.5072	0.0007774	4.1236	0.0021269	5.6308	0.0029043	515.7896143110424	127.73	1.1108	127.73	127.45	128.56	0					56	23	3	0	0	0	0.60331	1	14851	14851		63.306	6.5852	1	345430			21745	6165	17766	17789	24151	24151					0.047131626801501625
IYRKREEKRNT	11	Unmodified	_IYRKREEKRNT_					0	0	0		ENST00000413684.1_1_2:91935968-91936997:-|nuORF	ENST00000413684.1_1_2:91935968-91936997:-|nuORF	ENST00000413684.1_1_2:91935968-91936997:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.195068359375	3	498.282946	1491.82701	-0.84229	-0.0004197	0.42544	0.00021199	-0.41685	-0.00020771	498.28313001198745	49.529	0.48334	49.529	49.33	49.813	0					26	10	3	0	0	0	0.026204	1	3689	3689		16.53	0	1	1106200			21746	11566	17767	17790	24152	24152					0.1007680145185077
IYRLSNLMT	9	Unmodified	_IYRLSNLMT_					0	0	0		PSAP-SGPL1|1|fusion;ENSG00000166224|ENST00000373202|SGPL1	PSAP-SGPL1|1|fusion	PSAP-SGPL1|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	555.8013916015625	2	555.802434	1109.59032	1.9973	0.0011101	-3.1626	-0.0017578	-1.1653	-0.00064768	555.8005906035661	92.105	0.8829	92.105	91.794	92.677	0					55	20	4	0	0	0	0.13482	1	9952	9952		87.754	4.4671	1	6906200			21747	6653	17768	17791	24153	24153					0.03990358633973301
IYRWFNISF	9	Unmodified	_IYRWFNISF_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF;nc|ENSG00000166986|P56192-2|MARS1	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	MULTI-MSMS	OvCa99_classI_Rep5	1	623.3262329101562	2	623.324391	1244.63423	0.96884	0.0006039	1.0045	0.00062613	1.9733	0.00123	623.3248884022844	143.15	1.2246	143.15	142.73	143.96	0					54	24	3	0	0	0	0.3076	1	16725	16725		62.107	5.6736	1	392820			21748	6744	17769	17792	24154	24154					0.021697111225876142
IYRYLTSVL	9	Unmodified	_IYRYLTSVL_					0	0	0			REV__ENST00000380629.6_1_8:26270525-26270594:+|nuORF	REV__ENST00000380629.6_1_8:26270525-26270594:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.325439453125	2	564.326599	1126.63865	-0.55285	-0.00031199	1.1627	0.00065616	0.60988	0.00034417	564.3270524693943	126.79	0.9922	125.36	125.1	126.09	-1.4316					39	19	3	0	0	0	0.33652	1	12092	12092		58.782	19.529	1	76104	+		21749	25179	17770	17793	24155	24155					0.08039175545513899
IYSDIPPQV	9	Unmodified	_IYSDIPPQV_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;ENST00000500085.2_1_4:187509748-187518366:-|nuORF	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7903442382812	2	516.274032	1030.53351	1.4846	0.00076645	0.1868	9.6438E-05	1.6714	0.00086289	516.2739758912663	127.92	0.55493	127.92	127.63	128.18	0					25	11	3	0	0	0	0.027455	1	14809	14809		34.173	0	1	204680			21750	1705	17771	17794	24156	24156					0.01946634349087617
IYSEVATLI	9	Unmodified	_IYSEVATLI_					0	0	0		nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1	nc|ENSG00000078674|Q15154-4|PCM1	nc|ENSG00000078674|Q15154-4|PCM1	MULTI-MSMS	OvCa99_classI_Rep5	1	504.7847900390625	2	504.784233	1007.55391	1.783	0.00090002	-0.47314	-0.00023884	1.3098	0.00066118	504.78376578906034	129.3	0.9371	129.3	129.02	129.96	0					39	19	4	0	0	0	0.079296	2	14984	14984;15005		102.77	11.701	1	328450			21751	1597	17772	17795	24157;24158	24157					0.050438050089155695
IYSIDFTRF	9	Unmodified	_IYSIDFTRF_					0	0	0		ENSG00000175970|ENST00000344651|UNC119B;UNC119B|p.D133Ffs*42|1|0.12|ENSG00000175970|chr12:120716664-120716665|-/TTTCA|frameshift_variant	ENSG00000175970|ENST00000344651|UNC119B	ENSG00000175970|ENST00000344651|UNC119B	MULTI-MSMS	OvCa99_classI_Rep5	1	581.3017578125	2	581.300581	1160.58661	0.63822	0.000371	1.4955	0.00086936	2.1338	0.0012404	581.3011940881281	123.77	1.5569	123.77	123.42	124.98	0					79	33	5	0	0	0	0.070405	1	14283	14283		107.01	30.161	1	1421500			21752	7574	17773	17796	24159	24159					0.012740121317847297
IYSLGGWLP	9	Unmodified	_IYSLGGWLP_					0	0	0			REV__ENSG00000214782|ENST00000529108|MS4A18	REV__ENSG00000214782|ENST00000529108|MS4A18	MULTI-SECPEP	OvCa9_classI_Rep2	2	503.7631530761719	2	503.273835	1004.53312	-0.16022	-8.0636E-05	-2.5256	-0.0012711	-2.6858	-0.0013517	503.27208045053203	92.717	0.82451	91.549	91.129	91.953	-1.168					23	15	2	0	0	0	0.027456	1	8302	8302		54.765	32.805	1	48457	+		21753	23298	17774	17797	24160	24160					0.031032594199018604
IYSLGGWLP	9	Unmodified	_IYSLGGWLP_					0	0	0			REV__ENSG00000214782|ENST00000529108|MS4A18	REV__ENSG00000214782|ENST00000529108|MS4A18	MULTI-SECPEP	OvCa9_classI_Rep3	3	503.7647399902344	2	503.273835	1004.53312	-1.67	-0.00084045	-1.8242	-0.00091808	-3.4942	-0.0017585	503.27268790811684	93.364	0.80629	91.402	91.128	91.935	-1.9617					22	15	2	0	0	0	0.027462	1	6010	6010		35.201	1.6851	1	103200	+		21754	23298	17774	17797	24161	24161					0.031032594199018604
IYSLSWAPG	9	Unmodified	_IYSLSWAPG_					0	0	0		WDR17|p.L749Yfs*16|1|0.18|ENSG00000150627|chr4:176150167-176150167|T/-|frameshift_variant;ENSG00000150627|ENST00000508596|WDR17;nc|ENSG00000150627|Q8IZU2|WDR17	WDR17|p.L749Yfs*16|1|0.18|ENSG00000150627|chr4:176150167-176150167|T/-|frameshift_variant	WDR17|p.L749Yfs*16|1|0.18|ENSG00000150627|chr4:176150167-176150167|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	496.2956237792969	2	497.255643	992.496732	-0.7337	-0.00036484	-1.1972	-0.00059532	-1.9309	-0.00096016	497.25421320361113	88.108	0.66657	85.978	85.648	86.315	-2.1309					22	12	3	0	0	0	0.027462	1	5303	5303		26.796	4.8362	1	63376			21755	36304	17775	17798	24162	24162					0.00018382523182935984
IYSLSWAPG	9	Unmodified	_IYSLSWAPG_					0	0	0		WDR17|p.L749Yfs*16|1|0.18|ENSG00000150627|chr4:176150167-176150167|T/-|frameshift_variant;ENSG00000150627|ENST00000508596|WDR17;nc|ENSG00000150627|Q8IZU2|WDR17	WDR17|p.L749Yfs*16|1|0.18|ENSG00000150627|chr4:176150167-176150167|T/-|frameshift_variant	WDR17|p.L749Yfs*16|1|0.18|ENSG00000150627|chr4:176150167-176150167|T/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	497.255643	992.496732	1.0897	0.00054184	-4.6072	-0.002291	-3.5176	-0.0017491	497.25333380788885	87.461	0.74231	86.03	85.593	86.335	-1.4311	0.0015713	-0.0016045	NaN	26.796	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26581			21756	36304	17775	17798							0.00018382523182935984
IYSMQSYR	8	Unmodified	_IYSMQSYR_					0	0	0		tr|A0A553SQK0|A0A553SQK0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07865PE=4SV=1	tr|A0A553SQK0|A0A553SQK0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07865PE=4SV=1	tr|A0A553SQK0|A0A553SQK0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07865PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2883911132812	2	524.250034	1046.48552	-1.0818	-0.00056712	-0.60547	-0.00031742	-1.6872	-0.00088454	524.2502746867941	39.817	0.43059	39.817	39.63	40.06	0					19	9	3	0	0	0	0.028476	1	2398	2398		58.782	34.579	1	520870			21757	34170	17776	17799	24163	24163					-0.03586762842610369
IYSPQFSRL	9	Unmodified	_IYSPQFSRL_					0	0	0		nc|ENSG00000071909|Q8WXR4-3|MYO3B;nc|ENSG00000071909|Q8WXR4-2|MYO3B;nc|ENSG00000071909|Q8WXR4-4|MYO3B;ENSG00000071909|ENST00000408978|MYO3B;nc|ENSG00000071909|Q8WXR4-7|MYO3B;ENST00000602629.1_1_2:171225816-171400468:+|nuORF;MYO3B|p.C956Sfs*48|1|0.03|ENSG00000071909|chr2:170466564-170466564|G/-|frameshift_variant;nc|ENSG00000071909|Q8WXR4-6|MYO3B;ENST00000409940.6_1_2:171034716-171376051:+|nuORF;nc|ENSG00000071909|Q8WXR4-5|MYO3B;ENST00000438642.6_1_2:171034716-171400468:+|nuORF	nc|ENSG00000071909|Q8WXR4-3|MYO3B	nc|ENSG00000071909|Q8WXR4-3|MYO3B	MULTI-MSMS	OvCa99_classI_Rep5	1	555.8013305664062	2	555.800749	1109.58694	1.9973	0.0011101	-0.13026	-7.2398E-05	1.8671	0.0010377	555.8005906035661	92.105	0.8829	92.105	91.794	92.677	0					55	20	4	0	0	0	0.17606	1	9923	9923		80.455	3.6805	1	6906200			21758	1458	17777	17800	24164	24164					0.0365343185162601
IYSRYAGVK	9	Unmodified	_IYSRYAGVK_					0	0	0			REV__nc|ENSG00000011451|O95785|WIZ;REV__ENSG00000011451.21,WIZ,chr19,-,I7.1,15432762,15433164|90|6.04|4|intron	REV__nc|ENSG00000011451|O95785|WIZ	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.8323364257812	2	528.795466	1055.57638	0.0099461	5.2594E-06	-0.6077	-0.00032135	-0.59776	-0.00031609	528.7948228112293	84.445	1.7136	81.782	81.118	82.832	-2.6629					83	35	4	0	0	0	0.027455	1	7011	7011		42.396	0	1	373390	+		21759	16492;16491	17778	17801	24165	24165					0.0508144919717779
IYSSIKKSD	9	Unmodified	_IYSSIKKSD_					0	0	0			REV__tr|A0A7D6VTN3|A0A7D6VTN3_9CLOTBppUN-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11745PE=4SV=1	REV__tr|A0A7D6VTN3|A0A7D6VTN3_9CLOTBppUN-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11745PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	520.7861328125	2	520.784764	1039.55498	0.72045	0.0003752	0.35386	0.00018428	1.0743	0.00055948	520.784844937667	143.67	2.5589	143.67	142.09	144.64	0					90	51	4	0	0	0	0.48324	1	16769	16769		44.117	3.5442	1	262760	+		21760	31617	17779	17802	24166	24166					0.03678019377821329
IYSSLITLS	9	Unmodified	_IYSSLITLS_					0	0	0			REV__ENSG00000255298|ENST00000641992|OR8G5	REV__ENSG00000255298|ENST00000641992|OR8G5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.25640869140625	2	498.784233	995.553913	-0.96568	-0.00048167	0.21661	0.00010804	-0.74907	-0.00037362	498.78454804128455	70.373	0.63089	66.892	66.738	67.369	-3.4812					22	12	2	0	0	0	0.027441	1	5301	5301		37.159	0	1	104060	+		21761	23524	17780	17803	24167	24167					0.055958050089202516
IYSSLITLS	9	Unmodified	_IYSSLITLS_					0	0	0			REV__ENSG00000255298|ENST00000641992|OR8G5	REV__ENSG00000255298|ENST00000641992|OR8G5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	498.784233	995.553913	-0.60299	-0.00030076	-0.59439	-0.00029647	-1.1974	-0.00059723	498.78407928441817	69.51	0.59653	66.89	66.715	67.312	-2.6203	-0.00090219	-0.0004104	NaN	37.159	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35596	+		21762	23524	17780	17803							0.055958050089202516
IYSTAFDYF	9	Unmodified	_IYSTAFDYF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;ENST00000450651.5_1_22:21841260-21846319:-|nuORF;nc|ENSG00000290425|Q8N8J0|PI4KAP1;nc|ENSG00000183506|A4QPH2-2|PI4KAP2;ENST00000462560.6_1_22:21830876-21842641:-|nuORF;ENST00000467443.5_1_22:21831964-21846319:-|nuORF;nc|ENSG00000183506|A4QPH2-4|PI4KAP2	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	OvCa99_classI_Rep5	1	563.7594604492188	2	563.758215	1125.50188	1.716	0.00096742	0.41916	0.00023631	2.1352	0.0012037	563.7583570645545	138.71	1.2531	138.71	138.35	139.61	0					59	25	4	0	0	0	0.064607	2	16198	16175;16198		110.34	18.238	1	791790			21763	9359	17781	17804	24168;24169	24169					-0.05585358404869112
IYSTKLYRF	9	Unmodified	_IYSTKLYRF_					0	0	0		ENSG00000148925|ENST00000278174|BTBD10;ENST00000549824.1_1_12:53143198-53143681:+|nuORF;nc|ENSG00000148925|Q9BSF8-2|BTBD10	ENSG00000148925|ENST00000278174|BTBD10	ENSG00000148925|ENST00000278174|BTBD10	MULTI-MSMS	OvCa99_classI_Rep5	1	595.833251953125	2	595.832049	1189.64954	1.9581	0.0011667	-0.059602	-3.5513E-05	1.8985	0.0011312	595.83201482026	77.944	1.1973	77.944	77.672	78.869	0					67	28	4	0	0	0	0.055627	2	7868	7868;7894		115.49	46.982	1	7269400			21764	5432	17782	17805	24170;24171	24170					0.06230577919791358
IYSTPLPEKF	10	Unmodified	_IYSTPLPEKF_					0	0	0		ENSG00000109787|ENST00000261438|KLF3;nc|ENSG00000109787|P57682-2|KLF3	ENSG00000109787|ENST00000261438|KLF3	ENSG00000109787|ENST00000261438|KLF3	MULTI-MSMS	OvCa99_classI_Rep5	1	597.8246459960938	2	597.823889	1193.63323	2.018	0.0012064	0.51107	0.00030553	2.529	0.0015119	597.8240306252497	98.097	0.77172	98.097	97.78	98.552	0					45	17	4	0	0	0	0.065922	2	10787	10787;10819		123.21	56.779	1	3853000			21765	2734	17783	17806	24172;24173	24172					0.044154519630410505
IYSVFRNAASF	11	Unmodified	_IYSVFRNAASF_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;PLIN2|p.Q379Lfs*8|1|0.08|ENSG00000147872|chr9:19116426-19116427|-/TGTTTTCATGGAGA|frameshift_variant;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	OvCa99_classI_Rep5	1	637.8317260742188	2	637.830037	1273.64552	2.2909	0.0014612	-0.12207	-7.7863E-05	2.1688	0.0013833	637.829853032878	106.69	0.95364	106.69	106.36	107.31	0					67	21	5	0	0	0	1.7891E-13	3	12016	11996;12016;12043		205.59	117.89	1	6803900			21766	5378	17784	17807	24174;24175;24176	24175					0.0196448842607424
IYTCLLLFSVL	11	Unmodified	_IYTCLLLFSVL_					0	0	0		ENSG00000226479|ENST00000426077|TMEM185B	ENSG00000226479|ENST00000426077|TMEM185B	ENSG00000226479|ENST00000426077|TMEM185B	MULTI-SECPEP	OvCa9_classI_Rep3	3	642.845947265625	2	642.867243	1283.71993	-0.86112	-0.00055359	-1.07	-0.0006879	-1.9312	-0.0012415	642.8674379096699	76.105	0.46129	73.733	73.467	73.928	-2.3715					17	8	4	0	0	0	0.0253	1	3905	3905		60.972	25.82	1	49494			21767	9271	17785	17808	24177	24177					0.08942115193235622
IYTEGALY	8	Unmodified	_IYTEGALY_					0	0	0		tr|A0A7D6ZSD8|A0A7D6ZSD8_9CLOTPenicillin-bindingprotein1AOS=ClostridiumintestinaleOX=36845GN=HZF06_15435PE=4SV=1	tr|A0A7D6ZSD8|A0A7D6ZSD8_9CLOTPenicillin-bindingprotein1AOS=ClostridiumintestinaleOX=36845GN=HZF06_15435PE=4SV=1	tr|A0A7D6ZSD8|A0A7D6ZSD8_9CLOTPenicillin-bindingprotein1AOS=ClostridiumintestinaleOX=36845GN=HZF06_15435PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	465.2363586425781	2	465.234376	928.454199	0.16838	7.8334E-05	-0.33704	-0.0001568	-0.16866	-7.8469E-05	465.2340987550715	64.881	0.88252	64.881	64.544	65.426	0					54	21	4	0	0	0	0.33727	1	5938	5938		100.27	20.333	1	5299400			21768	35735	17786	17809	24178	24178					-0.012890126050365325
IYTFPHASF	9	Unmodified	_IYTFPHASF_					0	0	0		nc|ENSG00000111801|O00478-2|BTN3A3;ENSG00000111801|ENST00000244519|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	MULTI-MSMS	OvCa99_classI_Rep5	1	541.7705688476562	2	541.768917	1081.52328	-0.42197	-0.00022861	-1.2722	-0.00068926	-1.6942	-0.00091787	541.7681822981699	103.49	2.1308	103.49	103.18	105.31	0					109	49	4	0	0	0	0.013398	2	11590	11560;11590		157.99	24.52	1	19154000			21769	2855	17787	17810	24179;24180	24180					-0.014219285855006092
IYTGTPILDR	10	Unmodified	_IYTGTPILDR_					0	0	0			REV__ENSG00000169306|ENST00000378993|IL1RAPL1	REV__ENSG00000169306|ENST00000378993|IL1RAPL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.2628784179688	2	574.819138	1147.62372	-2.5108	-0.0014433	4.0932	0.0023529	1.5824	0.00090958	574.8215586225663	49.418	0.88309	46.276	45.884	46.767	-3.1416					28	16	2	0	0	0	0.027021	1	2837	2837		37.159	18.897	1	41219	+		21770	21453	17788	17811	24181	24181					0.055816836775193224
IYTHTHPTL	9	Unmodified	_IYTHTHPTL_					0	0	0			REV__ENST00000391411.9_1_17:21438109-21438268:-|nuORF	REV__ENST00000391411.9_1_17:21438109-21438268:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2910766601562	2	541.785099	1081.55564	-0.11506	-6.234E-05	-3.6293	-0.0019663	-3.7444	-0.0020287	541.7830149725479	47.157	0.39845	47.157	46.852	47.251	0					23	8	4	0	0	0	0.027462	1	3384	3384		53.351	16.323	1	593900	+		21771	25240	17789	17812	24182	24182					0.018128588175159166
IYTKIMDLI	9	Unmodified	_IYTKIMDLI_					0	0	0		ENSG00000173852|ENST00000638088|DPY19L1;nc|ENSG00000173852|Q2PZI1|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	MULTI-MSMS	OvCa99_classI_Rep5	1	555.3187866210938	2	555.317386	1108.62022	1.922	0.0010673	0.084681	4.7025E-05	2.0067	0.0011143	555.3173419911169	125.85	1.6585	125.85	125.39	127.05	0					77	36	4	0	0	0	0.0073055	3	14551	14528;14551;14575		190.52	70.961	1	4592800			21772	7422	17790	17813	24183;24184;24185	24184					0.0702529757929824
IYTKLNQKI	9	Unmodified	_IYTKLNQKI_					0	0	0		ENSG00000138190|ENST00000260762|EXOC6;nc|ENSG00000138190|Q8TAG9-2|EXOC6	ENSG00000138190|ENST00000260762|EXOC6	ENSG00000138190|ENST00000260762|EXOC6	MULTI-MSMS	OvCa99_classI_Rep5	1	560.841552734375	2	560.839874	1119.66519	0.69796	0.00039144	-1.0918	-0.00061233	-0.39384	-0.00022088	560.8391100162971	57.287	0.64229	57.287	57.048	57.691	0					29	14	3	0	0	0	0.3076	1	4807	4807		62.107	8.756	1	844480			21773	4668	17791	17814	24186	24186					0.11014864436833705
IYTLCNKEMK	10	Unmodified	_IYTLCNKEMK_					0	0	0		ENSG00000198674|ENST00000307002|OR10G6	ENSG00000198674|ENST00000307002|OR10G6	ENSG00000198674|ENST00000307002|OR10G6	MULTI-SECPEP	OvCa99_classI_Rep5	1	622.3412475585938	2	621.814684	1241.61482	0.12844	7.9867E-05	-3.6279	-0.0022559	-3.4994	-0.002176	621.8120999173254	114.64	1.1005	114.64	114.15	115.25	0					35	23	2	0	0	0	0.026548	1	13095	13095		72.879	20.58	1	129840			21774	8845	17792	17815	24187	24187					0.003672507251621937
IYTPIFNEY	9	Unmodified	_IYTPIFNEY_					0	0	0		nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.2613525390625	2	580.28714	1158.55973	1.3477	0.00078203	0.13075	7.5874E-05	1.4784	0.00085791	580.2870162065998	129.59	0.84305	129.59	129.26	130.1	0					47	17	5	0	0	0	0.026813	1	15040	15040		134.81	66.024	1	635080			21775	2270	17793	17816	24188	24188					-0.013210964794325264
IYTRLLPAL	9	Unmodified	_IYTRLLPAL_					0	0	0		nc|ENSG00000243989|Q03154-3|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1;nc|ENSG00000243989|Q03154-2|ACY1	nc|ENSG00000243989|Q03154-3|ACY1	nc|ENSG00000243989|Q03154-3|ACY1	MULTI-MSMS	OvCa99_classI_Rep5	1	530.333740234375	2	530.331685	1058.64882	1.7041	0.00090372	0.55198	0.00029273	2.256	0.0011965	530.3317403084227	116.78	1.4682	116.78	116.28	117.74	0					80	31	4	0	0	0	0.13482	3	13387	13340;13364;13387		87.754	20.053	1	2184100			21776	9388	17794	17817	24189;24190;24191	24191					0.12183783270734239
IYTRPGNTVK	10	Unmodified	_IYTRPGNTVK_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MULTI-MSMS	OvCa99_classI_Rep5	1	574.8263549804688	2	574.824755	1147.63496	0.59425	0.00034159	1.8402	0.0010578	2.4345	0.0013994	574.8255946215562	81.475	0.24548	81.475	81.248	81.493	0					16	5	4	0	0	0	0.61634	1	8389	8389		40.058	2.55	1	5891200			21777	2201	17795	17818	24192	24192					0.0670450577167685
IYTSSVNRL	9	Unmodified	_IYTSSVNRL_					0	0	0		COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant;nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant	COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	526.7922973632812	2	526.790381	1051.56621	-0.88393	-0.00046565	0.68064	0.00035855	-0.20329	-0.00010709	526.7907240124807	66.157	2.2058	66.157	65.831	68.037	0					193	55	6	0	0	0	0.03923	1	6118	6118		127.46	53.487	1	135020000			21778	669	17796	17819	24193	24193					0.04248841471940068
IYTVKVEDL	9	Unmodified	_IYTVKVEDL_					0	0	0		nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-2|PRMT1	nc|ENSG00000126457|Q99873-2|PRMT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.7823486328125	2	540.30279	1078.59103	3.3349	0.0018018	-0.71774	-0.0003878	2.6171	0.001414	540.3023008282184	97.434	0.81497	97.434	97.008	97.823	0					42	18	4	0	0	0	0.027448	1	10648	10648		44.117	1.7207	1	617370			21779	3781	17797	17820	24194	24194					0.05487476554662862
IYTWARGR	8	Unmodified	_IYTWARGR_					0	0	0		nc|ENSG00000181031|Q9UNE2-2|RPH3AL;ENSG00000181031|ENST00000331302|RPH3AL	nc|ENSG00000181031|Q9UNE2-2|RPH3AL	nc|ENSG00000181031|Q9UNE2-2|RPH3AL	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.270751953125	2	511.780151	1021.54575	1.2394	0.00063428	3.7066	0.0018969	4.9459	0.0025312	511.78185856333494	143.34	0.34724	143.34	143.22	143.56	0					8	6	2	0	0	0	0.028476	1	16767	16767		15.642	0	1	26432			21780	7916	17798	17821	24195	24195					0.03583715602792381
IYTYIHII	8	Unmodified	_IYTYIHII_					0	0	0		ENST00000367210.2_2_1:203771301-203771436:+|nuORF	ENST00000367210.2_2_1:203771301-203771436:+|nuORF	ENST00000367210.2_2_1:203771301-203771436:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.2784423828125	2	518.29731	1034.58007	1.4535	0.00075334	0.88121	0.00045673	2.3347	0.0012101	518.2974796841022	116.63	0.94926	116.63	116.32	117.27	0					34	20	3	0	0	0	0.028476	1	13355	13355		46.766	0	1	318280			21781	10838	17799	17822	24196	24196					0.06416118971060314
IYVFFVPCW	9	Unmodified	_IYVFFVPCW_					0	0	0			REV__ENSG00000174233|ENST00000357869|ADCY6	REV__ENSG00000174233|ENST00000357869|ADCY6	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.8168334960938	2	587.293714	1172.57287	3.2081	0.0018841	-3.6939	-0.0021694	-0.48576	-0.00028528	587.2912539202497	97.717	0.64163	97.717	97.353	97.995	0					28	14	3	0	0	0	0.027462	1	10745	10745		39.021	0	1	841790	+		21782	21819	17800	17823	24197	24197					-0.006509369010245791
IYVFTISIY	9	Unmodified	_IYVFTISIY_					0	0	0		tr|A0A553SII7|A0A553SII7_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14885PE=3SV=1	tr|A0A553SII7|A0A553SII7_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14885PE=3SV=1	tr|A0A553SII7|A0A553SII7_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14885PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	559.8101196289062	2	559.810251	1117.60595	0.62087	0.00034757	-2.9456	-0.001649	-2.3247	-0.0013014	559.8087007771232	133.88	0.39398	133.66	133.46	133.85	-0.22696					14	7	3	0	0	0	0.44294	1	13248	13248		47.916	1.9434	1	44157			21783	33384	17801	17824	24198	24198					0.05184968422690872
IYVHDLLTF	9	Unmodified	_IYVHDLLTF_					0	0	0		VPS39|p.E652Gfs*5|1|0.17|ENSG00000166887|chr15:42164462-42164463|-/C|frameshift_variant;ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000570062.1_1_15:42476637-42483338:-|nuORF	VPS39|p.E652Gfs*5|1|0.17|ENSG00000166887|chr15:42164462-42164463|-/C|frameshift_variant	VPS39|p.E652Gfs*5|1|0.17|ENSG00000166887|chr15:42164462-42164463|-/C|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	560.8065795898438	2	560.8055	1119.59645	2.2065	0.0012374	-0.4755	-0.00026666	1.731	0.00097077	560.8052285356309	127.07	2.8987	127.07	126.69	129.59	0					222	62	5	0	0	0	0.032351	6	14704	14680;14704;14800;14824;14850;14976		133.47	27.054	1	31631000			21784	6729	17802	17825	24199;24200;24201;24202;24203;24204	24200					0.04143200137127678
IYVIHHIN	8	Unmodified	_IYVIHHIN_					0	0	0		L1PA15_dup4761|chrX:56137796-56140776:+|1.2704796762244717|0.2808252408673861|2.18|428.0|8|1|sense	L1PA15_dup4761|chrX:56137796-56140776:+|1.2704796762244717|0.2808252408673861|2.18|428.0|8|1|sense	L1PA15_dup4761|chrX:56137796-56140776:+|1.2704796762244717|0.2808252408673861|2.18|428.0|8|1|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	504.7879943847656	2	504.784902	1007.55525	1.454	0.00073394	2.8695	0.0014485	4.3235	0.0021824	504.7862325871211	147.64	1.6122	147.64	147.21	148.82	0					57	32	2	0	0	0	0.74013	1	17281	17281		31.579	1.0753	1	145140			21785	14669	17803	17826	24205	24205					0.05177483888326151
IYVISAETF	9	Unmodified	_IYVISAETF_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-MSMS	OvCa99_classI_Rep5	1	521.7776489257812	2	521.776408	1041.53826	1.3395	0.0006989	0.74609	0.00038929	2.0855	0.0010882	521.7766928682386	128.21	0.84375	128.21	127.95	128.79	0					35	17	3	0	0	0	0.27546	1	14842	14842		65.803	14.468	1	426060			21786	3179	17804	17827	24206	24206					0.019155184918417945
IYVISAPSIY	10	Unmodified	_IYVISAPSIY_					0	0	0		ENSG00000090932|ENST00000356433|DLL3;nc|ENSG00000090932|Q9NYJ7|DLL3	ENSG00000090932|ENST00000356433|DLL3	ENSG00000090932|ENST00000356433|DLL3	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.2957763671875	2	563.313158	1124.61176	3.1615	0.0017809	1.5953	0.00089865	4.7568	0.0026796	563.3138740848439	107.71	0.38024	107.71	107.48	107.86	0					15	8	2	0	0	0	0.026552	1	12146	12146		63.306	0	1	683890			21787	1853	17805	17828	24207	24207					0.054440669343193804
IYVLNRRMA	9	Unmodified	_IYVLNRRMA_					0	0	0			REV__ENST00000552503.1_1_12:72668319-72697007:+|nuORF	REV__ENST00000552503.1_1_12:72668319-72697007:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.8406372070312	2	568.323868	1134.63318	1.7024	0.00096751	-2.871	-0.0016317	-1.1686	-0.00066416	568.3221600319645	130.04	0.66537	130.04	129.82	130.48	0					21	13	2	0	0	0	0.027462	1	15123	15123		50.025	5.6474	1	64544	+		21788	27497	17806	17829	24208	24208					0.07125173482063474
IYVLVNTDR	9	Unmodified	_IYVLVNTDR_					0	0	0			REV__ENST00000497457.5_1_1:113121036-113161548:-|nuORF	REV__ENST00000497457.5_1_1:113121036-113161548:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	546.8079833984375	2	546.806031	1091.59751	-0.99545	-0.00054432	4.3713	0.0023902	3.3758	0.0018459	546.8082578719798	116.77	2.0318	116.64	116.42	118.45	-0.12868					100	40	4	0	0	0	0.36502	1	11183	11183		55.504	7.5886	1	305590	+		21789	16385	17807	17830	24209	24209					0.05537414506011373
IYVNTQLLE	9	Unmodified	_IYVNTQLLE_					0	0	0		ENSG00000153208|ENST00000295408|MERTK	ENSG00000153208|ENST00000295408|MERTK	ENSG00000153208|ENST00000295408|MERTK	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.798095703125	2	546.800414	1091.58628	-0.72378	-0.00039576	0.2096	0.00011461	-0.51417	-0.00028115	546.8004745949249	121.35	1.8814	120.01	119.69	121.57	-1.3479					95	36	5	0	0	0	0.13482	1	11486	11486		87.754	0	1	1446200			21790	5667	17808	17831	24210	24210					0.04414592411899321
IYVPDIRNVF	10	Unmodified	_IYVPDIRNVF_					0	0	0		ENSG00000139974|ENST00000267488|SLC38A6;ENST00000529345.6_1_14:61448346-61550389:+|nuORF;nc|ENSG00000139974|Q8IZM9-2|SLC38A6	ENSG00000139974|ENST00000267488|SLC38A6	ENSG00000139974|ENST00000267488|SLC38A6	MULTI-MSMS	OvCa99_classI_Rep5	1	618.3445434570312	2	618.342781	1234.67101	0.62914	0.00038902	1.4325	0.00088578	2.0617	0.0012748	618.3436177832162	132.16	1.3194	132.16	131.81	133.13	0					72	27	4	0	0	0	0.18931	1	15363	15363		96.034	37.804	1	3166100			21791	4815	17809	17832	24211	24211					0.06305962948499655
IYVPELLVE	9	Unmodified	_IYVPELLVE_					0	0	0		tr|A0A7D6W392|A0A7D6W392_9CLOTArginaseOS=ClostridiumintestinaleOX=36845GN=rocFPE=3SV=1	tr|A0A7D6W392|A0A7D6W392_9CLOTArginaseOS=ClostridiumintestinaleOX=36845GN=rocFPE=3SV=1	tr|A0A7D6W392|A0A7D6W392_9CLOTArginaseOS=ClostridiumintestinaleOX=36845GN=rocFPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	537.80615234375	2	537.807708	1073.60086	1.6	0.00086048	-4.4301	-0.0023825	-2.8301	-0.0015221	537.8052358679963	69.946	1.7589	67.226	66.906	68.665	-2.7196					92	34	4	0	0	0	0.36502	1	3158	3158		55.504	11.127	1	888370			21792	35447	17810	17833	24212	24212					0.06700664560048608
IYVPKDSRHK	10	Unmodified	_IYVPKDSRHK_					0	0	0		AFAP1L1|p.I270T|1|0.06|ENSG00000157510|chr5:149310017-149310017|T/C|missense_variant;nc|ENSG00000157510|Q8TED9-3|AFAP1L1;ENST00000455574.6_1_5:148651531-148691878:+|nuORF;nc|ENSG00000157510|Q8TED9-2|AFAP1L1;ENSG00000157510|ENST00000296721|AFAP1L1	AFAP1L1|p.I270T|1|0.06|ENSG00000157510|chr5:149310017-149310017|T/C|missense_variant	AFAP1L1|p.I270T|1|0.06|ENSG00000157510|chr5:149310017-149310017|T/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.9039611816406	3	414.903295	1241.68806	-1.1043	-0.00045817	0.80703	0.00033484	-0.29725	-0.00012333	414.90350237528753	72.664	1.504	69.268	68.813	70.317	-3.3961					83	30	4	0	0	0	0.69073	1	5595	5595		23.378	0	1	461270			21793	44	17811	17834	24213	24213					0.07687883554308428
IYVQEMAKL	9	Unmodified	_IYVQEMAKL_					0	0	0		ENSG00000099284|ENST00000373255|MACROH2A2;ENST00000511494.5_1_5:134670668-134681802:-|nuORF;ENST00000512507.5_1_5:134670668-134688768:-|nuORF;nc|ENSG00000113648|O75367|MACROH2A1;nc|ENSG00000113648|O75367-3|MACROH2A1;ENSG00000113648|ENST00000511689|MACROH2A1	ENSG00000099284|ENST00000373255|MACROH2A2;ENST00000511494.5_1_5:134670668-134681802:-|nuORF	ENSG00000099284|ENST00000373255|MACROH2A2	MULTI-MSMS	OvCa99_classI_Rep5	1	547.8009033203125	2	547.79936	1093.58417	2.2278	0.0012204	-0.99019	-0.00054243	1.2376	0.00067797	547.7987490885031	95.03	0.34271	95.03	94.732	95.075	0					16	7	3	0	0	0	0.051592	1	10354	10354		117.81	19.182	1	4220700			21794	1965;2987	17812	17835	24214	24214					0.04111840402447342
IYVQGKFISV	10	Unmodified	_IYVQGKFISV_					0	0	0			REV__ENST00000439895.1_1_2:39037654-39037882:-|nuORF	REV__ENST00000439895.1_1_2:39037654-39037882:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.0062255859375	2	577.334424	1152.6543	1.3711	0.00079159	1.8574	0.0010723	3.2285	0.0018639	577.3357148469267	126.88	0.40976	126.88	126.69	127.1	0					13	8	2	0	0	0	0.026688	1	14654	14654		49.442	8.6634	1	134120	+		21795	25827	17813	17836	24215	24215					0.08407462062564264
IYVQYVHF	8	Unmodified	_IYVQYVHF_					0	0	0			REV__nc|ENSG00000048471|Q8TEQ0-2|SNX29	REV__nc|ENSG00000048471|Q8TEQ0-2|SNX29	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.8202514648438	2	534.779285	1067.54402	-0.74176	-0.00039668	-2.5437	-0.0013603	-3.2855	-0.001757	534.7778240777786	70.216	0.87236	70.216	70.005	70.877	0					30	21	2	0	0	0	0.028476	1	6728	6728		29.842	5.6388	1	504040	+		21796	16670	17814	17837	24216	24216					0.01294661794190688
IYVRLDFSI	9	Unmodified	_IYVRLDFSI_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OvCa99_classI_Rep5	1	563.320556640625	2	563.318774	1124.623	2.3348	0.0013152	-1.6014	-0.0009021	0.73337	0.00041312	563.3188689003764	133.65	1.1668	133.65	133.17	134.34	0					53	24	3	0	0	0	0.46356	1	15574	15574		45.972	0.020292	1	104970			21797	6376	17815	17838	24217	24217					0.06566889028476908
IYVSSWAVQ	9	Unmodified	_IYVSSWAVQ_					0	0	0		ENST00000441747.6_1_19:1490111-1490306:-|nuORF;ENST00000588195.5_1_19:1483001-1490375:-|nuORF;ENSG00000115257|ENST00000300954|PCSK4	ENST00000441747.6_1_19:1490111-1490306:-|nuORF	ENST00000441747.6_1_19:1490111-1490306:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.7945556640625	2	526.7742	1051.53385	-0.17039	-8.9758E-05	-3.6799	-0.0019385	-3.8503	-0.0020282	526.7719612429255	65.112	0.27533	65.112	64.995	65.271	0					11	6	3	0	0	0	0.027462	1	5940	5940		30.504	0	1	202190			21798	3075	17816	17839	24218	24218					0.010140540689462796
IYVTGGHLF	9	Unmodified	_IYVTGGHLF_					0	0	0		ENSG00000130487|ENST00000648057|KLHDC7B;nc|ENSG00000130487|Q96G42|KLHDC7B	ENSG00000130487|ENST00000648057|KLHDC7B	ENSG00000130487|ENST00000648057|KLHDC7B	MULTI-MSMS	OvCa99_classI_Rep5	1	503.7721862792969	2	503.77146	1005.52837	2.8228	0.0014221	0.77797	0.00039192	3.6008	0.001814	503.7712166599243	99.134	0.56969	99.134	98.877	99.447	0					41	13	4	0	0	0	0.073432	1	10939	10939		105.27	14.492	1	3745300			21799	3989	17817	17840	24219	24219					0.02582375277143001
IYVYGVFLL	9	Unmodified	_IYVYGVFLL_					0	0	0			REV__nc|ENSG00000151320|Q13023-2|AKAP6	REV__nc|ENSG00000151320|Q13023-2|AKAP6	MULTI-MSMS	OvCa99_classI_Rep5	1	543.8134155273438	2	543.815336	1085.61612	1.0349	0.00056277	-2.4977	-0.0013583	-1.4629	-0.00079552	543.8138166102398	142.86	0.77985	142.86	142.54	143.32	0					40	15	4	0	0	0	0.22187	1	16712	16712		72.62	11.648	1	181880	+		21800	28925	17818	17841	24220	24220					0.07673576147908534
IYYLCLGIQE	10	Unmodified	_IYYLCLGIQE_					0	0	0		ENSG00000121741|ENST00000610343|ZMYM2;ENST00000490152.1_1_13:20641134-20642237:+|nuORF	ENSG00000121741|ENST00000610343|ZMYM2	ENSG00000121741|ENST00000610343|ZMYM2	MULTI-MSMS	OvCa99_classI_Rep5	1	608.309326171875	2	607.809925	1213.6053	2.1188	0.0012878	1.0716	0.0006513	3.1903	0.0019391	607.811561305454	122.39	0.731	122.39	122.13	122.86	0					40	14	4	0	0	0	0.56767	1	14090	14090		45.952	1.8352	1	914050			21801	3496	17819	17842	24221	24221					0.007038057112822571
IYYLNESI	8	Unmodified	_IYYLNESI_					0	0	0		tr|A0A7D6VP05|A0A7D6VP05_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14755PE=4SV=1	tr|A0A7D6VP05|A0A7D6VP05_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14755PE=4SV=1	tr|A0A7D6VP05|A0A7D6VP05_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14755PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.76202392578125	2	507.760758	1013.50696	-0.36461	-0.00018514	4.3644	0.0022161	3.9998	0.0020309	507.76291546317833	116.38	1.6525	115.02	114.75	116.4	-1.3645					79	31	4	0	0	0	0.68714	1	10851	10851		45.952	2.3259	1	272140			21802	34742	17820	17843	24222	24222					0.0007494545775443839
IYYNSQRHW	9	Unmodified	_IYYNSQRHW_					0	0	0			REV__ENST00000495270.1_1_9:130699601-130700099:-|nuORF	REV__ENST00000495270.1_1_9:130699601-130700099:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	422.92010498046875	3	422.871995	1265.59415	-0.53602	-0.00022667	-0.60364	-0.00025526	-1.1397	-0.00048193	422.87162452858695	76.813	0.47421	73.874	73.598	74.072	-2.9389					12	9	2	0	0	0	0.027462	1	6111	6111		36.447	19.917	1	15477	+		21803	26742	17821	17844	24223	24223					-0.028018355479389356
IYYNSQRHW	9	Unmodified	_IYYNSQRHW_					0	0	0			REV__ENST00000495270.1_1_9:130699601-130700099:-|nuORF	REV__ENST00000495270.1_1_9:130699601-130700099:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	422.871995	1265.59415	-0.48558	-0.00020534	-1.234	-0.00052184	-1.7196	-0.00072717	422.8716327505467	75.737	0.57327	73.883	73.788	74.361	-1.854	0.048395	-0.00026911	NaN	36.447	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9121.3	+		21804	26742	17821	17844							-0.028018355479389356
IYYNSQRHW	9	Unmodified	_IYYNSQRHW_					0	0	0			REV__ENST00000495270.1_1_9:130699601-130700099:-|nuORF	REV__ENST00000495270.1_1_9:130699601-130700099:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		3	422.871995	1265.59415	-0.043334	-1.8325E-05	-1.0137	-0.00042866	-1.057	-0.00044699	422.8714594946617	76.118	0.5157	73.747	73.57	74.085	-2.3715	-0.087601	1.0404E-05	NaN	36.447	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31271	+		21805	26742	17821	17844							-0.028018355479389356
IYYVLGLSI	9	Unmodified	_IYYVLGLSI_					0	0	0		ENST00000523135.1_1_5:179680521-179691830:-|nuORF	ENST00000523135.1_1_5:179680521-179691830:-|nuORF	ENST00000523135.1_1_5:179680521-179691830:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.767578125	2	520.804968	1039.59538	-0.39532	-0.00020589	-1.4401	-0.00075003	-1.8355	-0.00095591	520.8033700209974	73.672	0.46742	73.672	73.44	73.907	0					15	11	2	0	0	0	0.027462	1	7265	7265		40.573	7.7602	1	364820			21806	13147	17822	17845	24224	24224					0.07716985768252016
IYYVLGLSI	9	Unmodified	_IYYVLGLSI_					0	0	0		ENST00000523135.1_1_5:179680521-179691830:-|nuORF	ENST00000523135.1_1_5:179680521-179691830:-|nuORF	ENST00000523135.1_1_5:179680521-179691830:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	520.804968	1039.59538	-0.54341	-0.00028301	-5.7925	-0.0030167	-6.3359	-0.0032998	520.8038788418588	75.892	0.20311	73.521	73.417	73.62	-2.3715	-0.075614	-0.0020752	NaN	57.811	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3861.4			21807	13147	17822	17845							0.07716985768252016
KAAAKQKNV	9	Unmodified	_KAAAKQKNV_					0	0	0		tr|A0A553SIS2|A0A553SIS2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15390PE=4SV=1	tr|A0A553SIS2|A0A553SIS2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15390PE=4SV=1	tr|A0A553SIS2|A0A553SIS2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15390PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.2582702636719	2	479.295633	956.576714	-0.39946	-0.00019146	0.26833	0.00012861	-0.13114	-6.2853E-05	479.2956154833274	38.371	0.36926	38.371	38.207	38.576	0					17	7	3	0	0	0	0.027462	1	2166	2166		35.618	8.9254	1	177940			21808	33419	17823	17846	24225	24225					0.09668868917037798
KAAALRRGR	9	Unmodified	_KAAALRRGR_					0	0	0			REV__ENST00000341853.5_1_15:100333036-100340296:-|nuORF	REV__ENST00000341853.5_1_15:100333036-100340296:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	499.822265625	2	499.820141	997.62573	-0.57843	-0.00028911	3.086	0.0015425	2.5076	0.0012534	499.8215198504847	61.365	0.7126	61.365	61.113	61.826	0					38	16	3	0	0	0	0.13482	1	5400	5400		87.754	5.4493	1	3145800	+		21809	24640	17824	17847	24226	24226					0.1268220199665393
KAAARRRR	8	Unmodified	_KAAARRRR_					0	0	0		nc|ENSG00000103056|Q9NY59-2|SMPD3;ENSG00000103056|ENST00000219334|SMPD3	REV__ENST00000527067.1_1_8:146228418-146228628:+|nuORF	REV__ENST00000527067.1_1_8:146228418-146228628:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	492.8177490234375	2	492.817933	983.621313	0.41979	0.00020688	1.9955	0.00098341	2.4153	0.0011903	492.8188013517872	31.854	0.69317	29.144	28.986	29.679	-2.7097					23	13	2	0	0	0	0.71369	2	1021	1008;1021		40.573	3.4135	1	94000			21810	2279	17825	17848	24227;24228	24228					0.12884737573745042
KAAAVTLK	8	Unmodified	_KAAAVTLK_					0	0	0		nc|ENSG00000110435|O00330-3|PDHX;ENSG00000110435|ENST00000227868|PDHX	nc|ENSG00000110435|O00330-3|PDHX	nc|ENSG00000110435|O00330-3|PDHX	MULTI-MSMS	OvCa9_classI_Rep2	2	401.2619934082031	2	401.263271	800.511988	1.296	0.00052003	-4.2066	-0.001688	-2.9106	-0.0011679	401.26147123184654	136.26	1.7613	136.04	135.22	136.99	-0.22696					76	35	3	0	0	0	0.7347	1	13529	13529		9.7057	0.2351	1	533840			21811	2775	17826	17849	24229	24229					0.10375294111054245
KAADKSNL	8	Unmodified	_KAADKSNL_					0	0	0			REV__ENSG00000164715|ENST00000297293|LMTK2	REV__ENSG00000164715|ENST00000297293|LMTK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	424.18072509765625	2	423.737617	845.460681	3.6071	0.0015285	-4.0922	-0.001734	-0.48508	-0.00020555	423.73563918763494	88.082	0.41737	88.082	87.881	88.298	0					11	9	2	0	0	0	0.028476	1	9352	9352		3.1592	0	1	61549	+		21812	21014	17827	17850	24230	24230					0.03176925346326698
KAADRLPNL	9	Unmodified	_KAADRLPNL_					0	0	0		ENST00000492723.1_1_22:35741624-35743199:+|nuORF;nc|ENSG00000100284|O60784-3|TOM1;nc|ENSG00000100284|O60784-4|TOM1;ENST00000424387.5_1_22:35695884-35743199:+|nuORF;ENSG00000100284|ENST00000449058|TOM1;nc|ENSG00000100284|O60784-2|TOM1	ENST00000492723.1_1_22:35741624-35743199:+|nuORF	ENST00000492723.1_1_22:35741624-35743199:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.2936706542969	2	499.293091	996.571629	-0.10796	-5.3903E-05	0.14597	7.2882E-05	0.038013	1.898E-05	499.2929074215485	64.835	1.308	61.35	61.066	62.374	-3.4854					59	26	4	0	0	0	0.34132	1	4642	4642		58.23	10.27	1	338970			21813	2038	17828	17851	24231	24231					0.07320565054419603
KAADRLPNL	9	Unmodified	_KAADRLPNL_					0	0	0		ENST00000492723.1_1_22:35741624-35743199:+|nuORF;nc|ENSG00000100284|O60784-3|TOM1;nc|ENSG00000100284|O60784-4|TOM1;ENST00000424387.5_1_22:35695884-35743199:+|nuORF;ENSG00000100284|ENST00000449058|TOM1;nc|ENSG00000100284|O60784-2|TOM1	ENST00000492723.1_1_22:35741624-35743199:+|nuORF	ENST00000492723.1_1_22:35741624-35743199:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	499.293091	996.571629	-1.0175	-0.00050802	1.1529	0.00057562	0.1354	6.7604E-05	499.2934432891652	63.963	1.73	61.23	60.65	62.38	-2.7327	-0.059933	0.00022521	NaN	58.23	63	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168540			21814	2038	17828	17851							0.07320565054419603
KAAITTLK	8	Unmodified	_KAAITTLK_					0	0	0		WDR3|p.R930Gfs*9|1|0.09|ENSG00000065183|chr1:117959402-117959402|G/-|frameshift_variant;ENSG00000065183|ENST00000349139|WDR3	WDR3|p.R930Gfs*9|1|0.09|ENSG00000065183|chr1:117959402-117959402|G/-|frameshift_variant	WDR3|p.R930Gfs*9|1|0.09|ENSG00000065183|chr1:117959402-117959402|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	423.27557373046875	2	423.276378	844.538203	0.49298	0.00020867	-3.7053	-0.0015684	-3.2124	-0.0013597	423.27473332954634	141.2	1.9317	139.74	139.4	141.33	-1.4627					94	36	4	0	0	0	0.74817	1	13818	13818		15.642	1.8665	1	1644700			21815	1317	17829	17852	24232	24232					0.10971563282510033
KAAKKIYE	8	Unmodified	_KAAKKIYE_					0	0	0			REV__PHF10|p.C380Ffs*9|1|0.04|ENSG00000130024|chr6:169705701-169705702|-/GAAA|frameshift_variant	REV__PHF10|p.C380Ffs*9|1|0.04|ENSG00000130024|chr6:169705701-169705702|-/GAAA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	475.7869567871094	2	475.78711	949.559667	-0.029569	-1.4069E-05	-0.66818	-0.00031791	-0.69775	-0.00033198	475.78674140613987	31.394	0.83896	28.684	28.543	29.382	-2.7097					48	16	5	0	0	0	0.72896	1	958	958		37.159	6.6555	1	116230	+		21816	18916	17830	17853	24233	24233					0.08286948311229025
KAAKTPLKI	9	Unmodified	_KAAKTPLKI_					0	0	0		nc|ENSG00000149480|O94776-2|MTA2;ENSG00000149480|ENST00000278823|MTA2	nc|ENSG00000149480|O94776-2|MTA2	nc|ENSG00000149480|O94776-2|MTA2	MULTI-MSMS	OvCa99_classI_Rep5	1	485.32623291015625	2	485.326402	968.638252	-0.62737	-0.00030448	0.5468	0.00026538	-0.080567	-3.9101E-05	485.3266010797201	37.919	0.95543	37.919	37.621	38.576	0					54	20	4	0	0	0	0.1243	1	2110	2110		90.601	11.15	1	2717900			21817	5461	17831	17854	24234	24234					0.15267800616322802
KAALCHLL	8	Unmodified	_KAALCHLL_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.D1429Afs*26|1|0.04|ENSG00000175054|chr3:142519765-142519765|T/-|frameshift_variant	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	OvCa99_classI_Rep5	1	434.7315979003906	2	434.757298	867.500044	0.64845	0.00028192	-3.0545	-0.0013279	-2.406	-0.001046	434.75557794615725	58.422	0.29401	58.422	58.194	58.488	0					10	6	2	0	0	0	0.028476	1	4934	4934		39.021	12.225	1	47905			21818	7509	17832	17855	24235	24235					0.0609935409619311
KAAPASALL	9	Unmodified	_KAAPASALL_					0	0	0			REV__ENSG00000109705|ENST00000382438|NKX3-2	REV__ENSG00000109705|ENST00000382438|NKX3-2	MULTI-MSMS	OvCa9_classI_Rep2	2	421.2594299316406	2	421.260728	840.506903	0.30073	0.00012669	-3.3692	-0.0014193	-3.0685	-0.0012926	421.25922240366054	134.3	0.7355	134.07	133.56	134.29	-0.22696					27	14	2	0	0	0	0.65476	1	13314	13314		25.45	11.675	1	153990	+		21819	17944	17833	17856	24236	24236					0.08026990248424681
KAAQFGLVP	9	Unmodified	_KAAQFGLVP_					0	0	0		nc|ENSG00000049540|P15502-5|ELN;ENSG00000049540|ENST00000252034|ELN;nc|ENSG00000049540|P15502-4|ELN;nc|ENSG00000049540|P15502|ELN	nc|ENSG00000049540|P15502-5|ELN	nc|ENSG00000049540|P15502-5|ELN	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.258056640625	2	465.774003	929.533452	2.4696	0.0011503	0.47008	0.00021895	2.9397	0.0013692	465.77407118809424	94.98	0.4288	94.98	94.69	95.119	0					17	9	2	0	0	0	0.027441	1	10340	10340		42.474	0	1	164480			21820	1170	17834	17857	24237	24237					0.06586679139763874
KAAQRRKN	8	Unmodified	_KAAQRRKN_					0	0	0		ENST00000529593.1_1_8:146277868-146278266:+|nuORF;ENST00000331434.6_1_8:146277984-146278266:+|nuORF	ENST00000529593.1_1_8:146277868-146278266:+|nuORF	ENST00000529593.1_1_8:146277868-146278266:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.28265380859375	2	486.296499	970.578445	-0.91633	-0.00044561	3.3848	0.001646	2.4684	0.0012004	486.2979986489539	95.155	0.75103	92.686	92.46	93.211	-2.4685					25	14	2	0	0	0	0.028476	1	8420	8420		55.504	14.932	1	67935			21821	10447	17835	17858	24238	24238					0.09197922725650187
KAASVAETLK	10	Unmodified	_KAASVAETLK_					0	0	0			REV__tr|A0A553SK92|A0A553SK92_NIACIAcetolactatesynthaseOS=NialliacirculansOX=1397GN=ilvBPE=3SV=1	REV__tr|A0A553SK92|A0A553SK92_NIACIAcetolactatesynthaseOS=NialliacirculansOX=1397GN=ilvBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	509.3003845214844	2	509.300581	1016.58661	0.73455	0.00037411	-0.98787	-0.00050312	-0.25332	-0.00012902	509.2999535995659	30.076	0.93833	27.366	27.063	28.002	-2.7097					40	18	3	0	0	0	0.55109	1	783	783		47.96	0.30219	1	131680	+		21822	30097	17836	17859	24239	24239					0.07898012131761334
KAASVRPVL	9	Unmodified	_KAASVRPVL_					0	0	0		nc|ENSG00000215305|Q9H269-2|VPS16;ENSG00000215305|ENST00000380445|VPS16	nc|ENSG00000215305|Q9H269-2|VPS16	nc|ENSG00000215305|Q9H269-2|VPS16	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.8014831542969	2	470.800552	939.58655	-0.031993	-1.5062E-05	0.19096	8.9902E-05	0.15896	7.484E-05	470.80051290049437	52.928	1.31	49.72	49.4	50.71	-3.208					57	25	3	0	0	0	0.3249	2	3196	3196;3209		60.118	6.7668	1	458210			21823	9205	17837	17860	24240;24241	24240					0.11434056922405489
KAASVRPVL	9	Unmodified	_KAASVRPVL_					0	0	0		nc|ENSG00000215305|Q9H269-2|VPS16;ENSG00000215305|ENST00000380445|VPS16	nc|ENSG00000215305|Q9H269-2|VPS16	nc|ENSG00000215305|Q9H269-2|VPS16	MULTI-MATCH	OvCa9_classI_Rep2	2		2	470.800552	939.58655	-1.2623	-0.00059431	1.3082	0.0006159	0.045877	2.1599E-05	470.80097704237284	52.578	1.1846	49.765	49.345	50.53	-2.8129	0.022524	0.00041145	NaN	60.118	54	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160830			21824	9205	17837	17860							0.11434056922405489
KAASVTPFIL	10	Unmodified	_KAASVTPFIL_					0	0	0		tr|A0A7D7ADC5|A0A7D7ADC5_9CLOT1,4-dihydroxy-2-naphthoatepolyprenyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22445PE=4SV=1	tr|A0A7D7ADC5|A0A7D7ADC5_9CLOT1,4-dihydroxy-2-naphthoatepolyprenyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22445PE=4SV=1	tr|A0A7D7ADC5|A0A7D7ADC5_9CLOT1,4-dihydroxy-2-naphthoatepolyprenyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22445PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.2924194335938	2	523.815867	1045.61718	-0.63747	-0.00033392	1.8859	0.00098787	1.2484	0.00065395	523.8168495260912	21.279	0.24711	19.941	19.77	20.017	-1.3386					6	4	2	0	0	0	0.027147	1	142	142		21.96	6.3181	1	7565.3			21825	36239	17838	17861	24242	24242					0.0961979051680828
KAAVHLVID	9	Unmodified	_KAAVHLVID_					0	0	0			REV__ENSG00000187961|ENST00000338591|KLHL17	REV__ENSG00000187961|ENST00000338591|KLHL17	MULTI-SECPEP	OvCa9_classI_Rep2	2	484.2807922363281	2	483.292559	964.570566	-0.8544	-0.00041293	-0.76306	-0.00036878	-1.6175	-0.00078171	483.2918091329579	85.867	1.8826	84.376	83.998	85.881	-1.4906					68	36	4	0	0	0	0.027462	1	7405	7405		44.117	21.074	1	79018	+		21826	22679	17839	17862	24243	24243					0.08686350685491107
KAAVHLVID	9	Unmodified	_KAAVHLVID_					0	0	0			REV__ENSG00000187961|ENST00000338591|KLHL17	REV__ENSG00000187961|ENST00000338591|KLHL17	MULTI-MATCH	OvCa9_classI_Rep3	3		2	483.292559	964.570566	-1.178	-0.00056933	0.40551	0.00019598	-0.77251	-0.00037335	483.29249585524747	86.645	1.8294	84.469	84.03	85.86	-2.1768	0.03229	0.00115	NaN	27.882	61	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107590	+		21827	22679	17839	17862							0.08686350685491107
KAAVLRDI	8	Unmodified	_KAAVLRDI_					0	0	0		ENST00000580395.1_1_17:26945751-26946955:-|nuORF	ENST00000580395.1_1_17:26945751-26946955:-|nuORF	ENST00000580395.1_1_17:26945751-26946955:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	442.72894287109375	2	443.279452	884.544351	0.89678	0.00039752	-0.76041	-0.00033708	0.13637	6.0448E-05	443.27896392872435	60.588	0.59236	60.588	60.392	60.984	0					28	13	3	0	0	0	0.028476	1	5312	5312		29.15	0	1	821280			21828	13985	17840	17863	24244	24244					0.09746081514015259
KAAYDMRPDE	10	Unmodified	_KAAYDMRPDE_					0	0	0			REV__ENSG00000198642|ENST00000359039|KLHL9	REV__ENSG00000198642|ENST00000359039|KLHL9	MULTI-SECPEP	OvCa9_classI_Rep3	3	598.3167724609375	2	598.274238	1194.53392	1.4243	0.00085212	3.2821	0.0019636	4.7064	0.0028157	598.2774752185372	108.58	0.65602	107.38	107.06	107.72	-1.1978					20	12	3	0	0	0	0.026734	1	7762	7762		31.53	2.3803	1	78972	+		21829	23039	17841	17864	24245	24245					-0.05556313993361073
KACFLLRAL	9	Unmodified	_KACFLLRAL_					0	0	0			REV__ENST00000565356.5_1_16:68349816-68386396:+|nuORF	REV__ENST00000565356.5_1_16:68349816-68386396:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.2998046875	2	517.812605	1033.61066	-1.6406	-0.00084954	-0.99761	-0.00051658	-2.6382	-0.0013661	518.3149737903585	63.955	0.35905	63.955	63.732	64.091	0					11	8	2	0	0	0	0.027462	1	5798	5798		24.203	0	1	171170	+		21830	27681	17842	17865	24246	24246					0.09519574084424676
KACLHGTIRA	10	Unmodified	_KACLHGTIRA_					0	0	0			REV__ENST00000538790.1_1_12:122506317-122506485:+|nuORF	REV__ENST00000538790.1_1_12:122506317-122506485:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.260986328125	2	535.300393	1068.58623	-0.34892	-0.00018678	-0.24649	-0.00013195	-0.59541	-0.00031872	535.3003445723555	35.407	0.3259	35.407	35.149	35.475	0					10	6	2	0	0	0	0.026782	1	1781	1781		45.972	0	1	42746	+		21831	27329	17843	17866	24247	24247					0.054683139309190665
KADELIDEYL	10	Unmodified	_KADELIDEYL_					0	0	0			REV__ENST00000554059.1_1_14:69866086-69895394:+|nuORF	REV__ENST00000554059.1_1_14:69866086-69895394:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	604.8035888671875	2	604.805894	1207.59723	2.1101	0.0012762	-4.0361	-0.002441	-1.9259	-0.0011648	604.8026948636509	92.997	0.86971	92.997	92.721	93.59	0					61	20	5	0	0	0	0.50999	1	10100	10100		52.937	8.5595	1	4454200	+		21832	27522	17844	17867	24248	24248					0.0017394999551925139
KADELLCY	8	Unmodified	_KADELLCY_					0	0	0			REV__FRMD6|p.Y583Ifs*75|1|0.08|ENSG00000139926|chr14:51727907-51727907|T/-|frameshift_variant	REV__FRMD6|p.Y583Ifs*75|1|0.08|ENSG00000139926|chr14:51727907-51727907|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	477.8216552734375	2	477.733686	953.452819	0.10311	4.9261E-05	-0.12765	-6.0982E-05	-0.024536	-1.1722E-05	477.73348679450356	81.483	1.1637	79.16	78.697	79.861	-2.3226					34	22	2	0	0	0	0.028476	1	4557	4557		44.531	12.576	1	31871	+		21833	28142	17845	17868	24249	24249					-0.02576969965457465
KADEVYAKL	9	Unmodified	_KADEVYAKL_					0	0	0		tr|A0A7D6VZW1|A0A7D6VZW1_9CLOTGlycine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=glyQSPE=3SV=1	tr|A0A7D6VZW1|A0A7D6VZW1_9CLOTGlycine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=glyQSPE=3SV=1	tr|A0A7D6VZW1|A0A7D6VZW1_9CLOTGlycine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=glyQSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.773681640625	2	518.787307	1035.56006	1.2327	0.0006395	-4.2036	-0.0021808	-2.9709	-0.0015413	518.7851259624941	127.54	0.98624	127.31	127.08	128.07	-0.2359					32	19	2	0	0	0	0.027453	1	12486	12486		45.972	0	1	121780			21834	35366	17846	17869	24250	24250					0.04370323240414109
KADIWLDP	8	Unmodified	_KADIWLDP_					0	0	0			REV__PRUNE2|p.V2237Cfs*11|1|0.06|ENSG00000106772|chr9:76705569-76705570|-/T|frameshift_variant	REV__PRUNE2|p.V2237Cfs*11|1|0.06|ENSG00000106772|chr9:76705569-76705570|-/T|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.77520751953125	2	479.255643	956.496732	0.59459	0.00028496	-1.6661	-0.00079849	-1.0715	-0.00051353	479.25367538813964	72.43	0.55797	72.43	72.165	72.723	0					28	13	3	0	0	0	0.028476	1	7050	7050		44.117	0	1	1386100	+		21835	17824	17847	17870	24251	24251					0.01674382523174245
KAEDEVVAKQ	10	Unmodified	_KAEDEVVAKQ_					0	0	0			REV__ENSG00000214872|ENST00000527972|SMTNL1	REV__ENSG00000214872|ENST00000527972|SMTNL1	MULTI-SECPEP	OvCa9_classI_Rep3	3	559.7969360351562	2	558.798403	1115.58225	-0.33053	-0.0001847	2.734	0.0015278	2.4035	0.0013431	558.7995937875136	80.358	0.65958	78.029	77.671	78.33	-2.3294					18	12	2	0	0	0	0.026602	1	4365	4365		47.96	18.81	1	29216	+		21836	23301	17848	17871	24252	24252					0.029085029181715072
KAEDEVVAKQ	10	Unmodified	_KAEDEVVAKQ_					0	0	0			REV__ENSG00000214872|ENST00000527972|SMTNL1	REV__ENSG00000214872|ENST00000527972|SMTNL1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	558.798403	1115.58225	0.84295	0.00047104	-0.81594	-0.00045594	0.02701	1.5093E-05	558.7981362858277	80.053	0.24745	78.358	78.271	78.519	-1.6951	0.16472	-0.0023905	NaN	47.96	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11008	+		21837	23301	17848	17871							0.029085029181715072
KAEEDKLAQ	9	Unmodified	_KAEEDKLAQ_					0	0	0			REV__ENSG00000179071|ENST00000316398|CCDC89	REV__ENSG00000179071|ENST00000316398|CCDC89	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7976684570312	2	516.272021	1030.52949	-0.72442	-0.000374	0.23254	0.00012005	-0.49188	-0.00025395	516.272225473864	55.077	0.59204	55.077	54.848	55.44	0					23	13	3	0	0	0	0.027462	1	4531	4531		21.686	0	1	335640	+		21838	22098	17849	17872	24253	24253					0.015445448553691676
KAEEKEVPK	9	Unmodified	_KAEEKEVPK_					0	0	0		ENSG00000186310|ENST00000373079|NAP1L3	ENSG00000186310|ENST00000373079|NAP1L3	ENSG00000186310|ENST00000373079|NAP1L3	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.2988891601562	2	529.298039	1056.58152	0.016215	8.5826E-06	-0.47599	-0.00025194	-0.45978	-0.00024336	529.2976255669407	140.62	1.5493	139.13	138.65	140.2	-1.4952					64	29	3	0	0	0	0.59259	1	13760	13760		32.812	2.4947	1	125420			21839	8329	17850	17873	24254	24254					0.0554970826913177
KAEELASIL	9	Unmodified	_KAEELASIL_					0	0	0			REV__ENSG00000159131|ENST00000381815|GART	REV__ENSG00000159131|ENST00000381815|GART	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.7390441894531	2	487.281857	972.549162	1.5699	0.00076498	0.70914	0.00034555	2.279	0.0011105	487.28210567064394	92.193	0.842	92.193	91.92	92.762	0					50	19	4	0	0	0	0.027446	1	9990	9990		42.864	11.334	1	5706400	+		21840	20597	17851	17874	24255	24255					0.061789208661252815
KAEGSEIRL	9	Unmodified	_KAEGSEIRL_					0	0	0		ENST00000576380.5_1_17:79813102-79817234:-|nuORF;ENST00000466567.2_1_17:79817024-79818356:-|nuORF;P4HB-STRA13|1|fusion;ENSG00000185624|ENST00000331483|P4HB	ENST00000576380.5_1_17:79813102-79817234:-|nuORF	ENST00000576380.5_1_17:79813102-79817234:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.2380676269531	2	501.782556	1001.55056	-1.0461	-0.00052493	0.74082	0.00037173	-0.30532	-0.0001532	501.78280103761927	46.393	0.83116	43.32	42.979	43.81	-3.0724					28	15	2	0	0	0	0.027447	1	2415	2415		39.253	11.371	1	58976			21841	8269	17852	17875	24256	24256					0.04984554954887699
KAELQTALA	9	Unmodified	_KAELQTALA_					0	0	0		GOLGA2|p.K864Rfs*49|1|0.05|ENSG00000167110|chr9:128257647-128257648|-/C|frameshift_variant;nc|ENSG00000167110|Q08379|GOLGA2;ENSG00000167110|ENST00000611957|GOLGA2	GOLGA2|p.K864Rfs*49|1|0.05|ENSG00000167110|chr9:128257647-128257648|-/C|frameshift_variant	GOLGA2|p.K864Rfs*49|1|0.05|ENSG00000167110|chr9:128257647-128257648|-/C|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.7427673339844	2	472.7742	943.533846	-0.26922	-0.00012728	0.47348	0.00022385	0.20427	9.6571E-05	472.7738645590838	40.519	0.40896	40.519	40.386	40.795	0					11	8	2	0	0	0	0.027402	1	2449	2449		47.657	17.154	1	66261			21842	6757	17853	17876	24257	24257					0.05982054068931575
KAENELDSVK	10	Unmodified	_KAENELDSVK_					0	0	0			REV__ENSG00000135862|ENST00000258341|LAMC1	REV__ENSG00000135862|ENST00000258341|LAMC1	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.7942504882812	2	566.79586	1131.57717	-0.76671	-0.00043457	0.41158	0.00023328	-0.35514	-0.00020129	566.7960488798107	90.363	0.76862	88.282	88.004	88.773	-2.0805					20	12	2	0	0	0	0.02663	1	5588	5588		35.152	18.435	1	23586	+		21843	19329	17854	17877	24258	24258					0.016641990555854136
KAEQAKHYKA	10	Unmodified	_KAEQAKHYKA_					0	0	0			REV__tr|A0A7D6W0Q8|A0A7D6W0Q8_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00465PE=4SV=1	REV__tr|A0A7D6W0Q8|A0A7D6W0Q8_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00465PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.8453979492188	2	587.32238	1172.63021	-0.24524	-0.00014403	-3.0853	-0.0018121	-3.3305	-0.0019561	587.3205256693955	43.165	0.59636	43.165	42.839	43.435	0					24	13	3	0	0	0	0.026494	1	2821	2821		67.494	3.9598	1	463530	+		21844	31863	17855	17878	24259	24259					0.05079621628897257
KAETIFQV	8	Unmodified	_KAETIFQV_					0	0	0			REV__tr|A0A7D6ZGE4|A0A7D6ZGE4_9CLOTHomocitratesynthaseOS=ClostridiumintestinaleOX=36845GN=nifVPE=3SV=1	REV__tr|A0A7D6ZGE4|A0A7D6ZGE4_9CLOTHomocitratesynthaseOS=ClostridiumintestinaleOX=36845GN=nifVPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	468.2660827636719	2	468.263468	934.512382	-0.31992	-0.00014981	-0.022579	-1.0573E-05	-0.3425	-0.00016038	468.26328715218733	67.768	0.86982	67.768	67.528	68.398	0					51	21	4	0	0	0	0.38806	1	6350	6350		90.37	8.1293	1	4283500	+		21845	31996	17856	17879	24260	24260					0.04250669040231969
KAETIFQV	8	Unmodified	_KAETIFQV_					0	0	0			REV__tr|A0A7D6ZGE4|A0A7D6ZGE4_9CLOTHomocitratesynthaseOS=ClostridiumintestinaleOX=36845GN=nifVPE=3SV=1	REV__tr|A0A7D6ZGE4|A0A7D6ZGE4_9CLOTHomocitratesynthaseOS=ClostridiumintestinaleOX=36845GN=nifVPE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	468.263468	934.512382	-0.31992	-0.00014981	-0.022579	-1.0573E-05	-0.3425	-0.00016038	468.26328715218733	67.768	0.86982	67.768	67.528	68.398	0	-0.11106	8.185E-05	NaN	90.37	51	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4283500	+		21846	31996	17856	17879							0.04250669040231969
KAETIFQV	8	Unmodified	_KAETIFQV_					0	0	0			REV__tr|A0A7D6ZGE4|A0A7D6ZGE4_9CLOTHomocitratesynthaseOS=ClostridiumintestinaleOX=36845GN=nifVPE=3SV=1	REV__tr|A0A7D6ZGE4|A0A7D6ZGE4_9CLOTHomocitratesynthaseOS=ClostridiumintestinaleOX=36845GN=nifVPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	468.263468	934.512382	0.14221	6.6594E-05	-0.32933	-0.00015421	-0.18711	-8.7617E-05	468.26307019757166	70.561	0.65974	67.99	67.714	68.374	-2.5707	0.11106	-0.00020543	NaN	90.37	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16299	+		21847	31996	17856	17879							0.04250669040231969
KAFATQSGSQ	10	Unmodified	_KAFATQSGSQ_					0	0	0		ENSG00000120738|ENST00000239938|EGR1	ENSG00000120738|ENST00000239938|EGR1	ENSG00000120738|ENST00000239938|EGR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.7935180664062	2	512.756538	1023.49852	0.18155	9.309E-05	2.4087	0.0012351	2.5903	0.0013282	513.2591514961515	60.293	1.0846	56.863	56.21	57.294	-3.43					40	21	3	0	0	0	0.026931	1	4085	4085		30.318	0	1	120880			21848	3449	17857	17880	24261	24261					-0.012286084588481572
KAFKGSIFV	9	Unmodified	_KAFKGSIFV_					0	0	0		ENSG00000138385|ENST00000260956|SSB	ENSG00000138385|ENST00000260956|SSB	ENSG00000138385|ENST00000260956|SSB	MULTI-MSMS	OvCa99_classI_Rep5	1	498.7992248535156	2	498.797478	995.580402	-0.3316	-0.0001654	1.1276	0.00056247	0.79604	0.00039706	498.7978782707139	71.405	0.76614	71.405	71.15	71.916	0					45	18	4	0	0	0	0.26076	1	6912	6912		67.494	15.195	1	2381600			21849	4683	17858	17881	24262	24262					0.08243538690908281
KAFLKILSC	9	Unmodified	_KAFLKILSC_					0	0	0		nc|ENSG00000151577|P35462-3|DRD3;ENSG00000151577|ENST00000383673|DRD3	nc|ENSG00000151577|P35462-3|DRD3	nc|ENSG00000151577|P35462-3|DRD3	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.80975341796875	2	511.806988	1021.59942	0.46079	0.00023583	2.739	0.0014019	3.1998	0.0016377	511.80831442868	37.858	1.6886	34.966	34.541	36.23	-2.8925					89	33	4	0	0	0	0.6653	1	1469	1469		24.203	1.1603	1	929280			21850	5566	17859	17882	24263	24263					0.08948751990294568
KAFNEIVDL	9	Unmodified	_KAFNEIVDL_					0	0	0		tr|A0A553SST6|A0A553SST6_NIACILXGdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03590PE=3SV=1	tr|A0A553SST6|A0A553SST6_NIACILXGdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03590PE=3SV=1	tr|A0A553SST6|A0A553SST6_NIACILXGdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03590PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.82080078125	2	524.787307	1047.56006	0.49568	0.00026013	1.8949	0.00099444	2.3906	0.0012546	524.7868106862217	152.84	0.19539	152.84	152.75	152.95	0					5	3	2	0	0	0	0.027462	1	17900	17900		25.574	0	1	13748			21851	34417	17860	17883	24264	24264					0.038183232404207956
KAFNWLLIL	9	Unmodified	_KAFNWLLIL_					0	0	0		ENST00000356929.3_1_19:21475855-21476059:-|nuORF	ENST00000356929.3_1_19:21475855-21476059:-|nuORF	ENST00000356929.3_1_19:21475855-21476059:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	560.32958984375	2	559.342052	1116.66955	0.64235	0.00035929	1.4062	0.00078653	2.0485	0.0011458	559.3436146239359	74.343	1.3882	71.112	70.769	72.157	-3.2308					46	28	2	0	0	0	0.027462	1	5897	5897		30.504	11.4	1	91311			21852	10703	17861	17884	24265	24265					0.1158837365042018
KAFQSIISV	9	Unmodified	_KAFQSIISV_					0	0	0		tr|A0A553SQK4|A0A553SQK4_NIACIThioesterdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07855PE=4SV=1	tr|A0A553SQK4|A0A553SQK4_NIACIThioesterdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07855PE=4SV=1	tr|A0A553SQK4|A0A553SQK4_NIACIThioesterdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07855PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	496.82086181640625	2	496.792392	991.570232	0.48208	0.00023949	-0.49647	-0.00024664	-0.014393	-7.1505E-06	496.79151093583556	71.039	1.1831	68.489	67.684	68.867	-2.5501					29	22	2	0	0	0	0.027462	1	5712	5712		31.53	6.0796	1	17637			21853	34171	17862	17885	24266	24266					0.07410930965681928
KAFRHILNFLR	11	Unmodified	_KAFRHILNFLR_					0	0	0		nc|ENSG00000213859|Q693B1|KCTD11;ENSG00000213859|ENST00000333751|KCTD11	nc|ENSG00000213859|Q693B1|KCTD11	nc|ENSG00000213859|Q693B1|KCTD11	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.2859191894531	3	472.285851	1413.83572	-4.4137	-0.0020845	0.25452	0.00012021	-4.1592	-0.0019643	472.28623594983816	156.93	2.47	155.39	154.2	156.67	-1.545					140	72	3	0	0	0	0.71831	1	15491	15491		23.378	5.5448	1	49755			21854	9151	17863	17886	24267	24267					0.14535819878960865
KAFRRSLVL	9	Unmodified	_KAFRRSLVL_					0	0	0		ENSG00000213988|ENST00000418063|ZNF90	ENSG00000213988|ENST00000418063|ZNF90	ENSG00000213988|ENST00000418063|ZNF90	MULTI-MSMS	OvCa99_classI_Rep5	1	545.3479614257812	2	545.3482	1088.68185	0.1368	7.4606E-05	-3.4941	-0.0019055	-3.3573	-0.0018309	545.346077867914	58.097	0.71325	58.097	57.859	58.572	0					38	16	3	0	0	0	0.38969	1	4916	4916		52.937	12.159	1	1437100			21855	9160	17864	17887	24268	24268					0.14105410113461403
KAFRVRSSLTT	11	Unmodified	_KAFRVRSSLTT_					0	0	0		ENSG00000170949|ENST00000683776|ZNF160	ENSG00000170949|ENST00000683776|ZNF160	ENSG00000170949|ENST00000683776|ZNF160	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3687744140625	2	633.369861	1264.72517	-4.5141	-0.0028591	3.4388	0.002178	-1.0753	-0.00068108	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.71498	1	15517	15517		24.519	4.5224	1	369460			21856	7156	17865	17888	24269	24269					0.1033955510006308
KAFRVRSSLTT	11	Unmodified	_KAFRVRSSLTT_					0	0	0		ENSG00000170949|ENST00000683776|ZNF160	ENSG00000170949|ENST00000683776|ZNF160	ENSG00000170949|ENST00000683776|ZNF160	MSMS	OvCa9_classI_Rep4_	4	633.3699951171875	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	154.4	1	152.95	152.45	153.45	-1.4516								0	0	0	0.19474	1	15282	15282		18.262	1.5447	1				21857	7156	17865	17888	24270	24270					0.1033955510006308
KAFSLPSTF	9	Unmodified	_KAFSLPSTF_					0	0	0		ENSG00000182111|ENST00000420713|ZNF716	ENSG00000182111|ENST00000420713|ZNF716	ENSG00000182111|ENST00000420713|ZNF716	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.2715759277344	2	499.271293	996.528032	0.34489	0.0001722	-0.72407	-0.00036151	-0.37917	-0.00018931	499.2708039159593	89.798	1.4152	87.223	86.95	88.365	-2.575					83	27	4	0	0	0	0.33652	1	7761	7761		58.782	0	1	2048000			21858	7968	17866	17889	24271	24271					0.02962955557291025
KAFVVNSKTL	10	Unmodified	_KAFVVNSKTL_					0	0	0			REV__tr|A0A7D6ZVM9|A0A7D6ZVM9_9CLOTDUF4931domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04805PE=4SV=1	REV__tr|A0A7D6ZVM9|A0A7D6ZVM9_9CLOTDUF4931domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04805PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8303833007812	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.762	1	14162	14162		23.523	1.5628	1	245610	+		21859	32257	17867	17890	24272	24272					0.10094577919812764
KAGAKRILV	9	Unmodified	_KAGAKRILV_					0	0	0		tr|A0A553SG99|A0A553SG99_NIACISirohydrochlorinchelataseOS=NialliacirculansOX=1397GN=CEQ21_10445PE=4SV=1	tr|A0A553SG99|A0A553SG99_NIACISirohydrochlorinchelataseOS=NialliacirculansOX=1397GN=CEQ21_10445PE=4SV=1	tr|A0A553SG99|A0A553SG99_NIACISirohydrochlorinchelataseOS=NialliacirculansOX=1397GN=CEQ21_10445PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.2900085449219	2	478.324194	954.633835	-0.82944	-0.00039674	0.68407	0.00032721	-0.14537	-6.9534E-05	478.32448065506486	43.079	0.52493	40.072	39.906	40.431	-3.0074					13	9	2	0	0	0	0.027462	1	2059	2059		31.955	13.63	1	12798			21860	33131	17868	17891	24273	24273					0.15470336193413914
KAGATPPNL	9	Unmodified	_KAGATPPNL_					0	0	0			REV__ENST00000565166.2_1_15:95399162-95399906:+|nuORF	REV__ENST00000565166.2_1_15:95399162-95399906:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	434.7491455078125	2	434.747985	867.481417	2.0212	0.00087871	0.46541	0.00020234	2.4866	0.001081	434.74810462899137	105.84	0.87653	105.84	105.53	106.41	0					62	19	4	0	0	0	0.064985	1	11902	11902		110.12	13.929	1	7528800	+		21861	27678	17869	17892	24274	24274					0.0423751572599258
KAGDWYGPA	9	Unmodified	_KAGDWYGPA_					0	0	0		ENSG00000125703|ENST00000317868|ATG4C	ENSG00000125703|ENST00000317868|ATG4C	ENSG00000125703|ENST00000317868|ATG4C	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.2712707519531	2	482.729792	963.445031	0.17218	8.3116E-05	1.1874	0.0005732	1.3596	0.00065631	482.7305972409126	66.652	0.36406	66.652	66.452	66.816	0					19	8	3	0	0	0	0.027462	1	6206	6206		18.324	0	1	400200			21862	3724	17870	17893	24275	24275					-0.038153611707230084
KAGGGGAG	8	Unmodified	_KAGGGGAG_					0	0	0			REV__ENSG00000180828|ENST00000321870|BHLHE22	REV__ENSG00000180828|ENST00000321870|BHLHE22	MULTI-SECPEP	OvCa9_classI_Rep4_	4	574.3074951171875	1	574.29435	573.287074	-0.93033	-0.00053428	-0.72135	-0.00041427	-1.6517	-0.00094855	574.2937225752052	127.88	0.20998	126.45	126.34	126.55	-1.4357					5	3	2	0	0	0	0.028476	1	12220	12220		0	0	1	15747	+		21863	22199	17871	17894	24276	24276					-0.016638156392787096
KAGGKLLTRL	10	Unmodified	_KAGGKLLTRL_					0	0	0			REV__tr|A0A553SQ21|A0A553SQ21_NIACIcardiolipinsynthaseOS=NialliacirculansOX=1397GN=clsPE=4SV=1	REV__tr|A0A553SQ21|A0A553SQ21_NIACIcardiolipinsynthaseOS=NialliacirculansOX=1397GN=clsPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.321533203125	2	528.848033	1055.68151	-2.582	-0.0013655	2.2266	0.0011776	-0.35538	-0.00018794	528.8491219945504	37.527	0.9353	34.817	34.534	35.469	-2.7097					34	18	3	0	0	0	0.02676	1	1757	1757		49.536	13.918	1	45104	+		21864	30598	17872	17895	24277	24277					0.15589990393596054
KAGGTLPTVL	10	Unmodified	_KAGGTLPTVL_					0	0	0		tr|A0A553SNY4|A0A553SNY4_NIACI1-deoxy-D-xylulose5-phosphatereductoisomeraseOS=NialliacirculansOX=1397GN=dxrPE=3SV=1	tr|A0A553SNY4|A0A553SNY4_NIACI1-deoxy-D-xylulose5-phosphatereductoisomeraseOS=NialliacirculansOX=1397GN=dxrPE=3SV=1	tr|A0A553SNY4|A0A553SNY4_NIACI1-deoxy-D-xylulose5-phosphatereductoisomeraseOS=NialliacirculansOX=1397GN=dxrPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	478.7929992675781	2	478.792392	955.570232	-0.51114	-0.00024473	-0.47899	-0.00022934	-0.99013	-0.00047407	478.79207532118255	82.802	1.8434	80.505	80.235	82.079	-2.2963					87	38	5	0	0	0	0.44431	1	4687	4687		62.107	5.3864	1	1894200			21865	33979	17873	17896	24278	24278					0.0906693096563913
KAGIFWLSQ	9	Unmodified	_KAGIFWLSQ_					0	0	0		ENST00000445215.5_1_22:42979956-42980232:-|nuORF	ENST00000445215.5_1_22:42979956-42980232:-|nuORF	ENST00000445215.5_1_22:42979956-42980232:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	525.2905883789062	2	525.292559	1048.57057	0.11111	5.8364E-05	-4.068	-0.0021369	-3.9569	-0.0020785	525.290259651577	31.392	0.78902	28.682	28.494	29.283	-2.7097					29	15	3	0	0	0	0.21231	1	948	948		74.255	2.3776	1	76726			21866	11973	17874	17897	24279	24279					0.04822350685526544
KAGKRKVF	8	Unmodified	_KAGKRKVF_					0	0	0			REV__ENSG00000173376|ENST00000379692|NDNF	REV__ENSG00000173376|ENST00000379692|NDNF	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.75360107421875	2	467.303262	932.59197	-1.0651	-0.00049772	0.88412	0.00041315	-0.18098	-8.4571E-05	467.3035645813526	34.609	0.70241	34.609	34.398	35.1	0					27	14	3	0	0	0	0.028476	1	1691	1691		25.45	3.7478	1	455000	+		21867	21767	17875	17898	24280	24280					0.12297780504900402
KAGKSFDLLI	10	Unmodified	_KAGKSFDLLI_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-SECPEP	OvCa9_classI_Rep2	2	545.797607421875	2	546.326599	1090.63865	0.039124	2.1375E-05	-0.43435	-0.0002373	-0.39523	-0.00021592	546.3260924830984	134.1	0.78542	133.87	133.41	134.2	-0.22696					19	15	2	0	0	0	0.026656	1	13224	13224		40.058	0	1	15100			21868	3721	17876	17899	24281	24281					0.09695175545539314
KAGLVNET	8	Unmodified	_KAGLVNET_					0	0	0			REV__MICB|p.A73T|1|0.07|ENSG00000204516|chr6:31505763-31505763|G/A|missense_variant	REV__MICB|p.A73T|1|0.07|ENSG00000204516|chr6:31505763-31505763|G/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	416.22930908203125	2	416.232168	830.449782	3.9806	0.0016569	-3.9392	-0.0016396	0.041456	1.7255E-05	416.23105177706424	132.25	0.7179	130.75	130.38	131.1	-1.5014					20	13	2	0	0	0	0.028476	1	12724	12724		26.796	1.3459	1	13756	+		21869	28667	17877	17900	24282	24282					0.027775229720305106
KAGLVNET	8	Unmodified	_KAGLVNET_					0	0	0			REV__MICB|p.A73T|1|0.07|ENSG00000204516|chr6:31505763-31505763|G/A|missense_variant	REV__MICB|p.A73T|1|0.07|ENSG00000204516|chr6:31505763-31505763|G/A|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	416.232168	830.449782	1.2742	0.00053037	-1.9393	-0.0008072	-0.66508	-0.00027683	416.2313754862265	131.17	0.59744	130.94	130.65	131.25	-0.22696	0.12142	0.00010814	NaN	26.796	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29141	+		21870	28667	17877	17900							0.027775229720305106
KAGLVNET	8	Unmodified	_KAGLVNET_					0	0	0			REV__MICB|p.A73T|1|0.07|ENSG00000204516|chr6:31505763-31505763|G/A|missense_variant	REV__MICB|p.A73T|1|0.07|ENSG00000204516|chr6:31505763-31505763|G/A|missense_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	416.232168	830.449782	0.7906	0.00032907	-0.63236	-0.00026321	0.15824	6.5865E-05	416.2323536667292	131.89	0.49823	130.76	130.54	131.04	-1.1249	-0.056034	0.0011961	NaN	26.796	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16205	+		21871	28667	17877	17900							0.027775229720305106
KAGMIYEDYI	10	Unmodified	_KAGMIYEDYI_					0	0	0		RGS17|p.R134G|1|0.14|ENSG00000091844|chr6:153024306-153024306|T/C|missense_variant	RGS17|p.R134G|1|0.14|ENSG00000091844|chr6:153024306-153024306|T/C|missense_variant	RGS17|p.R134G|1|0.14|ENSG00000091844|chr6:153024306-153024306|T/C|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	601.79052734375	2	601.791732	1201.56891	2.1461	0.0012915	-4.101	-0.0024679	-1.9548	-0.0011764	601.7890146434103	108.62	0.69182	108.62	108.28	108.97	0					35	15	3	0	0	0	0.42962	1	12282	12282		64.207	5.4253	1	1502400			21872	32783	17878	17901	24283	24283					-0.023810711853911926
KAGTLGSIPK	10	Unmodified	_KAGTLGSIPK_					0	0	0			REV__ENSG00000112214|ENST00000450218|FHL5	REV__ENSG00000112214|ENST00000450218|FHL5	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.7781066894531	2	486.297842	970.581131	1.7692	0.00086035	-1.9854	-0.00096551	-0.21625	-0.00010516	486.29702935495897	90.446	0.84555	89.144	88.83	89.675	-1.302					25	16	3	0	0	0	0.028051	1	7975	7975		109.48	21.724	1	55195	+		21873	18084	17879	17902	24284	24284					0.09466333339946686
KAHLGTAL	8	Unmodified	_KAHLGTAL_					0	0	0		ENSG00000186468|ENST00000296674|RPS23	ENSG00000186468|ENST00000296674|RPS23	ENSG00000186468|ENST00000296674|RPS23	MULTI-MSMS	OvCa99_classI_Rep5	1	405.7454833984375	2	405.745245	809.475937	0.80337	0.00032596	-0.79367	-0.00032203	0.0097025	3.9368E-06	405.74488772309655	40.409	1.266	40.409	40.154	41.42	0					52	27	3	0	0	0	0.17531	2	2446	2446;2471		128.86	27.65	1	4805700			21874	8336	17880	17903	24285;24286	24285					0.06357836934171246
KAIDLASKAAQ	11	Unmodified	_KAIDLASKAAQ_					0	0	0		ENST00000591475.5_1_18:61064221-61089576:-|nuORF;ENSG00000119541|ENST00000238497|VPS4B	ENST00000591475.5_1_18:61064221-61089576:-|nuORF	ENST00000591475.5_1_18:61064221-61089576:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.3518676757812	2	558.324588	1114.63462	-0.61051	-0.00034086	-0.016445	-9.1817E-06	-0.62695	-0.00035004	558.3242687039332	27.621	0.24975	27.621	27.491	27.741	0					9	4	3	0	0	0	0.025528	1	844	844		28.081	3.5623	1	126330			21875	3370	17881	17904	24287	24287					0.08189086051788763
KAIDYKRKIM	10	Unmodified	_KAIDYKRKIM_					0	0	0		tr|A0A7D7A5Q6|A0A7D7A5Q6_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_07100PE=3SV=1	tr|A0A7D7A5Q6|A0A7D7A5Q6_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_07100PE=3SV=1	tr|A0A7D7A5Q6|A0A7D7A5Q6_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_07100PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.3692626953125	2	633.373558	1264.73256	-3.7067	-0.0023477	-3.0372	-0.0019237	-6.7439	-0.0042714	633.3714685413702	153.42	3.7144	151.96	150.68	154.4	-1.4516					273	94	4	0	0	0	0.79213	1	15166	15166		19.997	0	1	395790			21876	36175	17882	17905	24288	24288					0.11078571376128821
KAIEPTIEI	9	Unmodified	_KAIEPTIEI_					0	0	0			REV__tr|A0A7D6W3N6|A0A7D6W3N6_9CLOTDNAtopoisomerase1OS=ClostridiumintestinaleOX=36845GN=topAPE=3SV=1	REV__tr|A0A7D6W3N6|A0A7D6W3N6_9CLOTDNAtopoisomerase1OS=ClostridiumintestinaleOX=36845GN=topAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.2948913574219	2	507.297507	1012.58046	0.22454	0.00011391	0.28013	0.00014211	0.50467	0.00025602	507.2956796701824	30.801	1.0836	28.091	27.656	28.74	-2.7097					58	21	5	0	0	0	0.69123	1	877	877		20.947	0.4651	1	97785	+		21877	31919	17883	17906	24289	24289					0.07467493900230693
KAINWLRTQ	9	Unmodified	_KAINWLRTQ_					0	0	0		ENST00000294064.8_1_11:74717502-74717559:+|nuORF	ENST00000294064.8_1_11:74717502-74717559:+|nuORF	ENST00000294064.8_1_11:74717502-74717559:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.8276977539062	2	565.327465	1128.64038	0.29235	0.00016528	1.457	0.00082371	1.7494	0.00098898	565.3283401622214	30.856	0.44718	30.856	30.483	30.93	0					13	8	3	0	0	0	0.027462	1	1219	1219		26.693	2.1737	1	176280			21878	10110	17884	17907	24290	24290					0.0812022935413097
KAIPMYKI	8	Unmodified	_KAIPMYKI_					0	0	0		ENST00000439215.1_1_1:43369124-43369580:+|nuORF;ENST00000481365.5_1_22:18080958-18102283:-|nuORF;nc|ENSG00000131100|P36543-2|ATP6V1E1;ENSG00000131100|ENST00000253413|ATP6V1E1;nc|ENSG00000131100|P36543-3|ATP6V1E1	ENST00000439215.1_1_1:43369124-43369580:+|nuORF	ENST00000439215.1_1_1:43369124-43369580:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	482.2878723144531	2	482.288431	962.562309	-0.097376	-4.6964E-05	0.79023	0.00038112	0.69286	0.00033416	482.2887055395944	67.559	0.58148	67.559	67.298	67.88	0					32	14	3	0	0	0	0.45246	1	6319	6319		82.305	10.927	1	2537300			21879	4044	17885	17908	24291	24291					0.07953080444542593
KAIQIRNKHS	10	Unmodified	_KAIQIRNKHS_					0	0	0			REV__ENSG00000231256|ENST00000449302|CFAP97D1	REV__ENSG00000231256|ENST00000449302|CFAP97D1	MSMS	OvCa9_classI_Rep4_	4	597.8579711914062	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.6	1	148.16	147.66	148.66	-1.4344								0	0	0	0.1384	1	14760	14760		31.53	4.8369	1		+		21880	23386	17886	17909	24292	24292					0.11018705648461946
KAITKRLP	8	Unmodified	_KAITKRLP_					0	0	0			REV__RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	REV__RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	463.8125915527344	2	463.810919	925.607286	-0.57347	-0.00026598	0.11312	5.2468E-05	-0.46035	-0.00021351	463.81086781731744	61.496	1.3407	61.496	61.2	62.541	0					71	31	4	0	0	0	0.65062	1	5412	5412		53.351	3.3269	1	8632100	+		21881	21802	17887	17910	24293	24293					0.1415064730207405
KAIVIDPKN	9	Unmodified	_KAIVIDPKN_					0	0	0		ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000533415.5_1_17:45198303-45266605:-|nuORF	ENSG00000004897|ENST00000066544|CDC27	ENSG00000004897|ENST00000066544|CDC27	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.2486267089844	2	499.305667	996.596781	2.3414	0.001169	0.036446	1.8198E-05	2.3778	0.0011872	499.3055714163185	91.66	0.59259	91.66	91.372	91.964	0					22	13	2	0	0	0	0.027446	1	9854	9854		28.081	4.5588	1	401070			21882	837	17888	17911	24294	24294					0.09834619856997051
KAKAIDDIQLH	11	Unmodified	_KAKAIDDIQLH_					0	0	0			REV__nc|ENSG00000196535|Q92614-5|MYO18A	REV__nc|ENSG00000196535|Q92614-5|MYO18A	MULTI-MSMS	OvCa9_classI_Rep4_	4	626.3536376953125	2	626.356419	1250.69829	-0.39236	-0.00024576	-0.44375	-0.00027795	-0.83611	-0.0005237	626.356152403707	51.423	1.663	48.25	48.022	49.685	-3.1734					111	32	5	0	0	0	0.50203	1	3040	3040		44.377	0	1	2182200	+		21883	22840	17889	17912	24295	24295					0.08296446488884612
KAKEEIVKL	9	Unmodified	_KAKEEIVKL_					0	0	0			REV__tr|A0A7D6ZWZ4|A0A7D6ZWZ4_9CLOTClassISAM-dependentmethyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09790PE=4SV=1	REV__tr|A0A7D6ZWZ4|A0A7D6ZWZ4_9CLOTClassISAM-dependentmethyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09790PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.3333740234375	2	529.334424	1056.6543	-0.93509	-0.00049498	2.5715	0.0013612	1.6365	0.00086623	529.3354942496067	58.155	0.70005	54.811	54.596	55.297	-3.3449					31	13	3	0	0	0	0.53483	1	3812	3812		39.253	1.4413	1	167600	+		21884	32307	17890	17913	24296	24296					0.12823462062578983
KAKEKSLIL	9	Unmodified	_KAKEKSLIL_					0	0	0			REV__ENST00000471841.5_1_3:179109981-179110074:+|nuORF	REV__ENST00000471841.5_1_3:179109981-179110074:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.8168334960938	2	515.336967	1028.65938	-0.51323	-0.00026449	-0.35004	-0.00018039	-0.86327	-0.00044487	515.3363092736499	48.04	0.86784	48.04	47.336	48.204	0					30	19	2	0	0	0	0.027462	1	3444	3444		27.882	3.6795	1	102730	+		21885	26295	17891	17914	24297	24297					0.14619765925203865
KAKIQDQK	8	Unmodified	_KAKIQDQK_					0	0	0		ENST00000480739.2_1_12:58068877-58069030:+|nuORF	ENST00000480739.2_1_12:58068877-58069030:+|nuORF	ENST00000480739.2_1_12:58068877-58069030:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.7864074707031	2	479.787641	957.56073	1.0491	0.00050334	-1.3086	-0.00062786	-0.25953	-0.00012452	479.7869235806788	36.612	1.0457	33.72	33.546	34.591	-2.8925					33	20	2	0	0	0	0.66992	1	1279	1279		49.442	1.5259	1	242730			21886	12536	17892	17915	24298	24298					0.0802516268013278
KAKITLSISSG	11	Unmodified	_KAKITLSISSG_					0	0	0			REV__tr|A0A553SJR8|A0A553SJR8_NIACIpullulanaseOS=NialliacirculansOX=1397GN=pulAPE=4SV=1	REV__tr|A0A553SJR8|A0A553SJR8_NIACIpullulanaseOS=NialliacirculansOX=1397GN=pulAPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.2927856445312	2	552.834788	1103.65502	0.010671	5.8995E-06	-2.13	-0.0011775	-2.1193	-0.0011716	552.8334873184323	96.244	0.45912	93.819	93.659	94.118	-2.4256					12	8	2	0	0	0	0.025814	1	8490	8490		20.837	6.7	1	25005	+		21887	30034	17893	17916	24299	24299					0.10734256711612034
KAKKGSQAF	9	Unmodified	_KAKKGSQAF_					0	0	0		COL5A1|p.Q491Hfs*125|1|0.14|ENSG00000130635|chr9:134738786-134738787|-/C|frameshift_variant;COL5A1|p.E1571Rfs*53|1|0.06|ENSG00000130635|chr9:134823462-134823463|-/C|frameshift_variant;nc|ENSG00000130635|P20908-2|COL5A1;ENSG00000130635|ENST00000371817|COL5A1	COL5A1|p.Q491Hfs*125|1|0.14|ENSG00000130635|chr9:134738786-134738787|-/C|frameshift_variant	COL5A1|p.Q491Hfs*125|1|0.14|ENSG00000130635|chr9:134738786-134738787|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	482.7839050292969	2	482.782359	963.550165	1.1629	0.00056142	2.6735	0.0012907	3.8364	0.0018521	482.7834710585416	120.81	2.5422	119.78	119.46	122	-1.0271					114	48	4	0	0	0	0.61365	1	9265	9265		30.318	2.0634	1	731330			21888	596	17894	17917	24300	24300					0.06693180025706624
KAKKRELN	8	Unmodified	_KAKKRELN_					0	0	0			REV__nc|ENSG00000136522|Q9HD33-3|MRPL47	REV__nc|ENSG00000136522|Q9HD33-3|MRPL47	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2723083496094	2	493.808908	985.603263	0.20778	0.0001026	3.8926	0.0019222	4.1004	0.0020248	493.81066139466213	73.9	0.37772	73.9	73.717	74.095	0					20	9	3	0	0	0	0.028476	1	7267	7267		15.642	0	1	708680	+		21889	19390	17895	17918	24301	24301					0.10988557808366295
KAKKRKAR	8	Unmodified	_KAKKRKAR_					0	0	0			REV__nc|ENSG00000070047|Q9P1Y6-2|PHRF1	REV__nc|ENSG00000070047|Q9P1Y6-2|PHRF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.3246154785156	2	493.34071	984.666866	-0.19719	-9.7282E-05	-2.6316	-0.0012983	-2.8288	-0.0013956	493.33949397803855	79.422	0.96097	76.67	76.514	77.475	-2.7514					36	19	3	0	0	0	0.028476	1	6433	6433		6.7355	0	1	84969	+		21890	16875	17896	17919	24302	24302					0.1739196303611834
KAKLPNLKEV	10	Unmodified	_KAKLPNLKEV_					0	0	0		nc|ENSG00000153815|Q8IY22-3|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	MULTI-SECPEP	OvCa9_classI_Rep2	2	569.8333129882812	2	570.360973	1138.70739	-0.83373	-0.00047553	-1.9897	-0.0011349	-2.8234	-0.0016104	570.3596594209043	97.988	0.63338	97.095	96.924	97.558	-0.89305					19	12	2	0	0	0	0.026931	1	8919	8919		12.207	0	1	38549			21891	5695	17897	17920	24303	24303					0.14358839845203875
KAKMVPEKVPR	11	Unmodified	_KAKMVPEKVPR_					0	0	0		nc|ENSG00000185658|Q9NSI6|BRWD1	nc|ENSG00000185658|Q9NSI6|BRWD1	nc|ENSG00000185658|Q9NSI6|BRWD1	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8831176757812	2	641.886832	1281.75911	-4.6434	-0.0029805	-1.9733	-0.0012666	-6.6167	-0.0042472	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.70142	1	15604	15604		29.17	2.4771	1	543390			21892	15215	17898	17921	24304	24304					0.12950260267462
KAKMVPEKVPR	11	Unmodified	_KAKMVPEKVPR_					0	0	0		nc|ENSG00000185658|Q9NSI6|BRWD1	nc|ENSG00000185658|Q9NSI6|BRWD1	nc|ENSG00000185658|Q9NSI6|BRWD1	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8838500976562	2	641.886832	1281.75911	-4.605	-0.0029559	-2.4981	-0.0016035	-7.1031	-0.0045594	641.8852528126143	150.24	3.761	149.29	147.05	150.81	-0.95119					231	74	4	0	0	0	0.70142	2	12740	12734;12740		29.17	1.8369	1	246170			21893	15215	17898	17921	24305;24306	24306					0.12950260267462
KAKMVPEKVPR	11	Unmodified	_KAKMVPEKVPR_					0	0	0		nc|ENSG00000185658|Q9NSI6|BRWD1	nc|ENSG00000185658|Q9NSI6|BRWD1	nc|ENSG00000185658|Q9NSI6|BRWD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.882568359375	2	641.886832	1281.75911	-3.6311	-0.0023307	-2.9625	-0.0019016	-6.5935	-0.0042323	641.8847801872174	153.39	4.0845	151.94	150.68	154.77	-1.4516					420	106	6	0	0	0	0.61983	1	15194	15194		42.864	6.4175	1	809780			21894	15215	17898	17921	24307	24307					0.12950260267462
KAKNRRRV	8	Unmodified	_KAKNRRRV_					0	0	0		STK10|p.K56Rfs*39|1|0.05|ENSG00000072786|chr5:172156778-172156778|T/-|frameshift_variant	STK10|p.K56Rfs*39|1|0.05|ENSG00000072786|chr5:172156778-172156778|T/-|frameshift_variant	STK10|p.K56Rfs*39|1|0.05|ENSG00000072786|chr5:172156778-172156778|T/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.3143920898438	2	514.333416	1026.65228	1.9833	0.0010201	-2.2983	-0.0011821	-0.31504	-0.00016204	514.8318255247916	77.327	0.41756	77.327	77.126	77.544	0					18	9	3	0	0	0	0.028476	1	7807	7807		18.324	0	1	201170			21895	32924	17899	17922	24308	24308					0.14001890887971058
KAKRSVARFS	10	Unmodified	_KAKRSVARFS_					0	0	0			REV__ENST00000540664.5_1_10:98721011-98721128:+|nuORF	REV__ENST00000540664.5_1_10:98721011-98721128:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8463745117188	2	575.346189	1148.67783	-4.8723	-0.0028032	3.718	0.0021391	-1.1543	-0.00066411	575.3482857575835	154.87	1.1278	154.64	154.34	155.47	-0.22696					59	30	3	0	0	0	0.73378	1	15813	15813		26.693	8.3685	1	84487	+		21896	27357	17900	17923	24309	24309					0.10943320619730912
KAKTWIPEV	9	Unmodified	_KAKTWIPEV_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.2593994140625	2	536.313492	1070.61243	-0.02714	-1.4556E-05	1.6931	0.00090801	1.6659	0.00089345	536.312381553835	86.802	0.40366	84.625	84.38	84.784	-2.1768					11	6	3	0	0	0	0.027462	1	5162	5162		34.173	15.848	1	24002			21897	1827	17901	17924	24310	24310					0.07994906374028687
KAKVKLMS	8	Unmodified	_KAKVKLMS_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__nc|ENSG00000155657|Q8WZ42-6|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	453.2415466308594	2	452.786056	903.557558	0.053042	2.4017E-05	-4.135	-0.0018723	-4.0819	-0.0018482	452.7840827815523	58.73	0.27951	58.73	58.572	58.852	0					15	6	3	0	0	0	0.028476	1	4998	4998		21.96	0	1	400920	+		21898	28943	17902	17925	24311	24311					0.10192196301784406
KALAENPAVNT	11	Unmodified	_KALAENPAVNT_					0	0	0		tr|A0A553SS01|A0A553SS01_NIACIThuA-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01995PE=4SV=1	tr|A0A553SS01|A0A553SS01_NIACIThuA-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01995PE=4SV=1	tr|A0A553SS01|A0A553SS01_NIACIThuA-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01995PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.8394775390625	2	564.306395	1126.59824	-0.33206	-0.00018738	0.82184	0.00046377	0.48978	0.00027639	564.3056970436477	52.058	0.21463	52.058	51.912	52.127	0					6	4	2	0	0	0	0.025594	1	4056	4056		33.922	19.057	1	82341			21899	34319	17903	17926	24312	24312					0.04000209155083212
KALEILSYN	9	Unmodified	_KALEILSYN_					0	0	0			REV__tr|A0A553SJI8|A0A553SJI8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_16860PE=4SV=1	REV__tr|A0A553SJI8|A0A553SJI8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_16860PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.7623901367188	2	525.795132	1049.57571	-0.38342	-0.0002016	0.88335	0.00046446	0.49993	0.00026286	525.7948682863398	64.453	0.89498	61.729	61.181	62.076	-2.7245					39	15	4	0	0	0	0.027462	1	4867	4867		25.574	6.4705	1	52652	+		21900	30009	17904	17927	24313	24313					0.052906097574805244
KALEILSYN	9	Unmodified	_KALEILSYN_					0	0	0			REV__tr|A0A553SJI8|A0A553SJI8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_16860PE=4SV=1	REV__tr|A0A553SJI8|A0A553SJI8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_16860PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	525.795132	1049.57571	-0.77386	-0.00040689	0.61598	0.00032388	-0.15788	-8.3012E-05	525.7952375045066	61.367	0.63227	61.367	61.071	61.704	0	-0.26066	-8.6291E-05	NaN	19.104	38	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1573100	+		21901	30009	17904	17927							0.052906097574805244
KALFRALKS	9	Unmodified	_KALFRALKS_					0	0	0		ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3273315429688	2	517.329476	1032.6444	-0.96898	-0.00050128	0.18183	9.4066E-05	-0.78715	-0.00040722	517.3296389860662	52.976	1.0878	50.162	49.887	50.975	-2.8139					50	21	3	0	0	0	0.51865	1	3559	3559		40.778	3.6191	1	189920			21902	1216	17905	17928	24314	24314					0.129383188478414
KALGSVAERP	10	Unmodified	_KALGSVAERP_					0	0	0			REV__nc|ENSG00000121775|Q9GZU3-4|TMEM39B	REV__nc|ENSG00000121775|Q9GZU3-4|TMEM39B	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.815673828125	2	514.298373	1026.58219	-0.20171	-0.00010374	4.3331	0.0022285	4.1314	0.0021248	514.300394784729	75.481	0.50568	73.071	72.822	73.327	-2.4106					11	9	2	0	0	0	0.026659	1	3804	3804		30.318	0	1	14093	+		21903	18557	17906	17929	24315	24315					0.06996547708831713
KALHKGDIVL	10	Unmodified	_KALHKGDIVL_					0	0	0			REV__nc|ENSG00000160305|Q14689-5|DIP2A	REV__nc|ENSG00000160305|Q14689-5|DIP2A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.7463989257812	2	547.340041	1092.66553	-1.5131	-0.00082819	0.79402	0.0004346	-0.7191	-0.00039359	547.3403984222264	106.82	0.58023	104.95	104.75	105.33	-1.8785					15	10	2	0	0	0	0.026849	1	9753	9753		49.442	11.63	1	17586	+		21904	20655	17907	17930	24316	24316					0.12290284156688358
KALHTCSPTNK	11	Unmodified	_KALHTCSPTNK_					0	0	0		nc|ENSG00000185760|Q9NR82-3|KCNQ5	nc|ENSG00000185760|Q9NR82-3|KCNQ5	nc|ENSG00000185760|Q9NR82-3|KCNQ5	MULTI-MSMS	OvCa9_classI_Rep4_	4	600.3138427734375	2	600.313697	1198.61284	0.10657	6.3974E-05	-0.74585	-0.00044774	-0.63928	-0.00038377	600.3133222024811	101.55	3.5557	99.284	98.883	102.44	-2.2665					163	68	6	0	0	0	0.54114	1	9129	9129		50.034	7.6374	1	611890			21905	15217	17908	17931	24317	24317					0.021479580316054125
KALKKPER	8	Unmodified	_KALKKPER_					0	0	0		ENST00000223864.6_1_9:5358246-5358294:-|nuORF	ENST00000223864.6_1_9:5358246-5358294:-|nuORF	ENST00000223864.6_1_9:5358246-5358294:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.3089294433594	2	485.313826	968.613099	-0.076504	-3.7128E-05	-0.54717	-0.00026555	-0.62367	-0.00030268	485.313344387344	30.781	0.19864	30.781	30.682	30.881	0					6	3	2	0	0	0	0.028476	1	1205	1205		44.117	0	1	7632			21906	9703	17909	17932	24318	24318					0.12753745813756723
KALKPKTKQP	10	Unmodified	_KALKPKTKQP_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa9_classI_Rep2	2	569.8679809570312	2	569.868966	1137.72338	1.4908	0.00084956	-1.3607	-0.0007754	0.13013	7.416E-05	569.8680060004389	27.967	1.4627	25.257	24.994	26.456	-2.7097					48	31	3	0	0	0	0.90007	1	581	581		6.3127	2.3274	1	71415	+		21907	28942;32737	17910	17933	24319	24319					0.1600254608213163
KALLKNNSI	9	Unmodified	_KALLKNNSI_					0	0	0			REV__tr|A0A7D6ZNE4|A0A7D6ZNE4_9CLOTDNApolymeraseIVOS=ClostridiumintestinaleOX=36845GN=dinBPE=3SV=1	REV__tr|A0A7D6ZNE4|A0A7D6ZNE4_9CLOTDNApolymeraseIVOS=ClostridiumintestinaleOX=36845GN=dinBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	500.8072814941406	2	500.811116	999.60768	-0.87576	-0.00043859	0.50427	0.00025254	-0.37149	-0.00018605	500.811245172876	75.276	2.1877	72.865	72.488	74.676	-2.4106					100	42	3	0	0	0	0.27001	1	3794	3794		66.429	2.8954	1	813300	+		21908	32117	17911	17934	24320	24320					0.10786022231263814
KALLYGYEGSD	11	Unmodified	_KALLYGYEGSD_					0	0	0			REV__tr|A0A7D6VRU8|A0A7D6VRU8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08405PE=4SV=1	REV__tr|A0A7D6VRU8|A0A7D6VRU8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08405PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	608.2982177734375	2	608.298236	1214.58192	0.47062	0.00028628	-3.3901	-0.0020622	-2.9195	-0.0017759	608.2961852172294	58.97	2.6323	55.578	55.15	57.782	-3.392					100	52	2	0	0	0	0.5614	1	3892	3892		46.457	7.7032	1	2056500	+		21909	31447	17912	17935	24321	24321					-0.01678916801665764
KALLYKVLD	9	Unmodified	_KALLYKVLD_					0	0	0			REV__nc|ENSG00000102316|Q9UNF1-2|MAGED2	REV__nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.294677734375	2	531.831517	1061.64848	2.485	0.0013216	0.85141	0.0004528	3.3365	0.0017744	531.8319678759157	89.092	0.43007	89.092	88.922	89.352	0					17	10	2	0	0	0	0.027462	1	9481	9481		27.882	7.4004	1	389070	+		21910	17549	17913	17936	24322	24322					0.12012363550911687
KALLYKVLD	9	Unmodified	_KALLYKVLD_					0	0	0			REV__nc|ENSG00000102316|Q9UNF1-2|MAGED2	REV__nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	531.831517	1061.64848	0.64281	0.00034187	-1.0489	-0.00055784	-0.4061	-0.00021597	531.8309182549442	90.629	0.7466	89.327	88.929	89.675	-1.302	-0.005784	-0.0016251	NaN	20.947	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8466.3	+		21911	17549	17913	17936							0.12012363550911687
KALLYKVLD	9	Unmodified	_KALLYKVLD_					0	0	0			REV__nc|ENSG00000102316|Q9UNF1-2|MAGED2	REV__nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	531.831517	1061.64848	-0.69267	-0.00036838	-0.51615	-0.00027451	-1.2088	-0.00064289	531.8308408080737	91.603	0.45699	89.579	89.382	89.839	-2.0241	0.24675	-0.0010584	NaN	20.947	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15502	+		21912	17549	17913	17936							0.12012363550911687
KALNEIKV	8	Unmodified	_KALNEIKV_					0	0	0			REV__nc|ENSG00000078304|Q13362-2|PPP2R5C	REV__nc|ENSG00000078304|Q13362-2|PPP2R5C	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.2405090332031	2	457.78711	913.559667	-0.6062	-0.00027751	0.3477	0.00015917	-0.2585	-0.00011834	457.7871959266441	52.835	0.9026	49.627	49.4	50.303	-3.208					29	17	2	0	0	0	0.028476	1	3202	3202		32.812	15.447	1	117630	+		21913	17023	17914	17937	24323	24323					0.09942948311231703
KALQARVTT	9	Unmodified	_KALQARVTT_					0	0	0		ENST00000565701.1_1_16:84531449-84531692:-|nuORF	ENST00000565701.1_1_16:84531449-84531692:-|nuORF	ENST00000565701.1_1_16:84531449-84531692:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	494.3007507324219	2	494.300916	986.587279	-3.5514	-0.0017554	3.5081	0.0017341	-0.043274	-2.139E-05	494.3024982316327	153.87	1.3713	153.64	153.28	154.65	-0.22696					70	29	4	0	0	0	0.56889	1	15690	15690		35.618	3.6634	1	375650			21914	13825	17915	17938	24324	24324					0.09344851571461277
KALQHLLL	8	Unmodified	_KALQHLLL_					0	0	0			REV__ENSG00000187676|ENST00000343307|B3GLCT	REV__ENSG00000187676|ENST00000343307|B3GLCT	MULTI-SECPEP	OvCa9_classI_Rep3	3	469.2955627441406	2	468.30547	934.596387	-0.11211	-5.25E-05	-0.42977	-0.00020127	-0.54188	-0.00025376	468.30521098510104	102.7	2.1959	101.18	100.63	102.83	-1.5211					138	41	5	0	0	0	0.028476	1	7171	7171		26.796	0	1	1655400	+		21915	22653	17916	17939	24325	24325					0.12647244927802603
KALQLELK	8	Unmodified	_KALQLELK_					0	0	0			REV__ENSG00000135205|ENST00000285871|CCDC146	REV__ENSG00000135205|ENST00000285871|CCDC146	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.2768859863281	2	471.80276	941.590967	1.8469	0.00087135	-3.5965	-0.0016969	-1.7497	-0.00082551	471.80077576799255	86.49	1.2885	83.863	83.613	84.901	-2.6269					53	25	3	0	0	0	0.028476	1	7292	7292		35.618	0	1	237970	+		21916	19264	17917	17940	24326	24326					0.11783521345319059
KALRDITLA	9	Unmodified	_KALRDITLA_					0	0	0		tr|A0A553SRC1|A0A553SRC1_NIACIGrpBfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00785PE=4SV=1	tr|A0A553SRC1|A0A553SRC1_NIACIGrpBfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00785PE=4SV=1	tr|A0A553SRC1|A0A553SRC1_NIACIGrpBfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00785PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	500.8111877441406	2	500.811116	999.60768	-1.0985	-0.00055014	0.67144	0.00033627	-0.42705	-0.00021387	500.8113530634366	47.85	1.0429	45.141	44.737	45.779	-2.7097					36	20	2	0	0	0	0.56889	1	2952	2952		35.618	1.4457	1	130710			21917	34248	17918	17941	24327	24327					0.10786022231275183
KALRHMPPL	9	Unmodified	_KALRHMPPL_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;nc|ENSG00000074755|O43149-3|ZZEF1;ENST00000574474.1_1_17:3979912-4046255:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MSMS	OvCa9_classI_Rep4_	4	531.816650390625	2	531.815679	1061.6168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.19	1	136.66	136.16	137.16	-1.5284								0	0	0	0.20692	1	13448	13448		25.45	5.4534	1				21918	1517	17919	17942	24328	24328					0.08846092315957321
KALRNRQLKCV	11	Unmodified	_KALRNRQLKCV_					0	0	0			REV__nc|ENSG00000174600|Q99788-2|CMKLR1	REV__nc|ENSG00000174600|Q99788-2|CMKLR1	MULTI-SECPEP	OvCa9_classI_Rep3	3	444.2616271972656	3	443.602962	1327.78706	1.0866	0.00048203	3.615	0.0016036	4.7016	0.0020856	443.6043821194102	68.041	0.44893	65.154	64.94	65.388	-2.8873					18	8	3	0	0	0	0.02642	1	2949	2949		3.4087	0	1	16560	+		21919	21842	17920	17943	24329	24329					0.13627583247580333
KALRRTESNS	10	Unmodified	_KALRRTESNS_					0	0	0		ENST00000407847.4_1_5:122491639-122495243:+|nuORF	ENST00000407847.4_1_5:122491639-122495243:+|nuORF	ENST00000407847.4_1_5:122491639-122495243:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	581.3176879882812	2	581.320368	1160.62618	2.164	0.001258	-4.2495	-0.0024703	-2.0855	-0.0012124	581.3176834919786	27.289	0.74899	24.579	24.362	25.111	-2.7097					31	17	3	0	0	0	0.75313	1	458	458		24.519	5.4157	1	30397			21920	11502	17921	17944	24330	24330					0.05229532135194859
KALRYVARI	9	Unmodified	_KALRYVARI_					0	0	0		ENSG00000198934|ENST00000361470|MAGEE1	ENSG00000198934|ENST00000361470|MAGEE1	ENSG00000198934|ENST00000361470|MAGEE1	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.3212280273438	2	545.3482	1088.68185	-0.38427	-0.00020956	0.68391	0.00037297	0.29964	0.00016341	545.3484224981534	69.52	0.57197	69.52	69.268	69.84	0					28	13	3	0	0	0	0.027455	1	6659	6659		42.396	0	1	319330			21921	8911	17922	17945	24331	24331					0.14105410113461403
KALSKKPPQPE	11	Unmodified	_KALSKKPPQPE_					0	0	0		ENSG00000133246|ENST00000423345|PRAM1	ENSG00000133246|ENST00000423345|PRAM1	ENSG00000133246|ENST00000423345|PRAM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.2264709472656	3	408.243317	1221.70812	0.62492	0.00025512	0.88486	0.00036124	1.5098	0.00061635	408.2434806284804	38.184	0.22948	38.184	38.024	38.254	0					7	4	2	0	0	0	0.025773	1	2158	2158		35.496	12.118	1	25327			21922	4214	17923	17946	24332	24332					0.10613634494279722
KALSPCEAL	9	Unmodified	_KALSPCEAL_					0	0	0		tr|A0A7D7A3N5|A0A7D7A3N5_9CLOTHD-GYPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22320PE=4SV=1	tr|A0A7D7A3N5|A0A7D7A3N5_9CLOTHD-GYPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22320PE=4SV=1	tr|A0A7D7A3N5|A0A7D7A3N5_9CLOTHD-GYPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22320PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.7532043457031	2	466.249503	930.484453	-0.18893	-8.8088E-05	0.81811	0.00038145	0.62918	0.00029336	466.2498275780786	47.123	0.51332	44.05	43.759	44.272	-3.0724					15	9	2	0	0	0	0.027433	1	2534	2534		64.207	25.401	1	258900			21923	36122	17924	17947	24333	24333					0.016430227884939086
KALYLPNTQL	10	Unmodified	_KALYLPNTQL_					0	0	0			REV__nc|ENSG00000145703|Q13576-3|IQGAP2	REV__nc|ENSG00000145703|Q13576-3|IQGAP2	MULTI-MSMS	OvCa9_classI_Rep2	2	580.8388061523438	2	580.837331	1159.66011	0.52161	0.00030297	2.2722	0.0013198	2.7939	0.0016228	580.8384501537045	91.799	4.0228	90.563	88.747	92.77	-1.2355					168	77	3	0	0	0	0.48398	1	8154	8154		56.434	1.6575	1	640260	+		21924	19977	17925	17948	24334	24334					0.08666560574238247
KAMAVRATV	9	Unmodified	_KAMAVRATV_					0	0	0			REV__tr|A0A553SJX4|A0A553SJX4_NIACIPenicillin-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_17605PE=4SV=1	REV__tr|A0A553SJX4|A0A553SJX4_NIACIPenicillin-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_17605PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	473.7790222167969	2	473.778762	945.542971	-0.86084	-0.00040785	1.367	0.00064767	0.50619	0.00023982	473.7794680535518	34.232	1.7401	34.232	33.921	35.661	0					70	36	4	0	0	0	0.56889	1	1626	1626		35.618	3.6634	1	879680	+		21925	30052	17926	17949	24335	24335					0.06802124153625755
KAMQPLKSR	9	Oxidation (M)	_KAM(Oxidation (M))QPLKSR_		KAM(1)QPLKSR		KAM(57)QPLKSR	0	0	1		ENST00000439139.1_1_1:158165752-158165914:-|nuORF	ENST00000439139.1_1_1:158165752-158165914:-|nuORF	ENST00000439139.1_1_1:158165752-158165914:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.8073120117188	2	537.808051	1073.60155	-0.95901	-0.00051576	-2.7138	-0.0014595	-3.6729	-0.0019753	537.8066148682773	98.63	1.9396	96.251	95.773	97.713	-2.3786					88	37	3	0	0	0	0.35444	1	8765	8765		56.721	10.749	1	602400			21926	11908	17927	17950	24336	24336		330			0.06769180728110769
KAMRDGDIRS	10	Unmodified	_KAMRDGDIRS_					0	0	0		tr|A0A7D7A242|A0A7D7A242_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_18110PE=4SV=1	tr|A0A7D7A242|A0A7D7A242_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_18110PE=4SV=1	tr|A0A7D7A242|A0A7D7A242_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_18110PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.7940063476562	2	574.795672	1147.57679	1.7305	0.0009947	2.1763	0.0012509	3.9068	0.0022456	574.7971116076603	128.6	0.46989	128.6	128.28	128.75	0					14	9	2	0	0	0	0.026782	1	14872	14872		37.812	22.17	1	92832			21927	36060	17928	17951	24337	24337					0.00890500854734455
KANAILMTKL	10	Unmodified	_KANAILMTKL_					0	0	0		ENST00000507794.2_1_4:25200037-25200079:+|nuORF	ENST00000507794.2_1_4:25200037-25200079:+|nuORF	ENST00000507794.2_1_4:25200037-25200079:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	551.8319702148438	2	551.836277	1101.658	-0.25095	-0.00013848	-3.6762	-0.0020287	-3.9272	-0.0021672	551.8341547217644	100.17	1.3886	99.337	99.014	100.4	-0.83051					70	27	4	0	0	0	0.57535	1	9187	9187		45.022	0.9054	1	447510			21928	12935	17929	17952	24338	24338					0.1112380856479831
KANFPFLS	8	Unmodified	_KANFPFLS_					0	0	0		tr|A0A553SS93|A0A553SS93_NIACILPXTGcellwallanchordomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02590PE=3SV=1	tr|A0A553SS93|A0A553SS93_NIACILPXTGcellwallanchordomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02590PE=3SV=1	tr|A0A553SS93|A0A553SS93_NIACILPXTGcellwallanchordomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02590PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	463.2522277832031	2	462.252903	922.491253	2.1497	0.00099371	1.0325	0.00047727	3.1822	0.001471	462.25289895574855	84.001	0.58698	84.001	83.801	84.388	0					19	13	2	0	0	0	0.028476	1	8768	8768		40.573	16.37	1	338970			21929	34346	17930	17953	24339	24339					0.026907037313776527
KANIPDRR	8	Unmodified	_KANIPDRR_					0	0	0		ENSG00000184828|ENST00000590800|ZBTB7C	ENSG00000184828|ENST00000590800|ZBTB7C	ENSG00000184828|ENST00000590800|ZBTB7C	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.282958984375	2	485.283057	968.551562	0.7704	0.00037386	-0.85451	-0.00041468	-0.084113	-4.0819E-05	485.28250543597454	33.895	1.5942	31.106	30.706	32.301	-2.7881					60	31	3	0	0	0	0.73938	1	944	944		31.955	1.4512	1	135770			21930	8193	17931	17954	24340	24340					0.06602814114467037
KANVMGYLK	9	Unmodified	_KANVMGYLK_					0	0	0			REV__tr|A0A7D6VSY9|A0A7D6VSY9_9CLOTDNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18580PE=4SV=1	REV__tr|A0A7D6VSY9|A0A7D6VSY9_9CLOTDNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18580PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.80914306640625	2	512.28642	1022.55829	0.32752	0.00016778	3.0717	0.0015736	3.3992	0.0017414	512.2880173389568	38.194	0.44563	35.267	35.106	35.552	-2.9264					16	8	3	0	0	0	0.027462	1	1456	1456		29.15	3.6994	1	15090	+		21931	31557	17932	17955	24341	24341					0.04790990950834839
KAPDQILANIL	11	Unmodified	_KAPDQILANIL_					0	0	0			REV__ENSG00000131503|ENST00000360839|ANKHD1	REV__ENSG00000131503|ENST00000360839|ANKHD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	597.7945556640625	2	598.355888	1194.69722	1.3006	0.00077821	4.1938	0.0025094	5.4944	0.0032876	598.3582144913387	131.34	1.3593	131.34	130.91	132.27	0					68	28	4	0	0	0	0.02535	1	15299	15299		45.022	13.388	1	708740	+		21932	19019	17933	17956	24342	24342					0.10766232119999586
KAPKLRTGPSR	11	Unmodified	_KAPKLRTGPSR_					0	0	0			REV__nc|ENSG00000099904|Q9ULC8-3|ZDHHC8	REV__nc|ENSG00000099904|Q9ULC8-3|ZDHHC8	MULTI-MSMS	OvCa9_classI_Rep3	3	605.8729248046875	2	605.872571	1209.73059	-4.4328	-0.0026857	3.4628	0.002098	-0.96995	-0.00058766	605.8745511795182	157.17	1.2501	156	155.65	156.91	-1.1707					83	31	4	0	0	0	0.71498	1	13590	13590		24.519	10.382	1	204530	+		21933	17340	17934	17957	24343	24343					0.13411278682542616
KAPLHIVSL	9	Unmodified	_KAPLHIVSL_					0	0	0		ENST00000336034.8_1_19:42703119-42703434:-|nuORF	ENST00000336034.8_1_19:42703119-42703434:-|nuORF	ENST00000336034.8_1_19:42703119-42703434:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	489.794677734375	2	489.310752	976.606951	-0.03124	-1.5286E-05	-1.9899	-0.00097368	-2.0211	-0.00098897	489.30994004430835	39.535	0.2972	36.608	36.495	36.792	-2.9264					8	5	2	0	0	0	0.027462	1	1636	1636		23.042	10.836	1	7893.7			21934	10506	17935	17958	24344	24344					0.117712275822214
KAPRPNIKL	9	Unmodified	_KAPRPNIKL_					0	0	0			REV__ENSG00000146247|ENST00000275034|PHIP	REV__ENSG00000146247|ENST00000275034|PHIP	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.2965087890625	2	518.834926	1035.6553	-0.6844	-0.00035509	0.48623	0.00025227	-0.19817	-0.00010282	518.8351297278402	60.213	0.35523	60.213	59.997	60.352	0					18	8	3	0	0	0	0.027462	1	5232	5232		29.15	0	1	319910	+		21935	20002	17936	17959	24345	24345					0.13889721222108165
KAQELQEKL	9	Unmodified	_KAQELQEKL_					0	0	0			REV__ENSG00000113645|ENST00000265293|WWC1	REV__ENSG00000113645|ENST00000265293|WWC1	MULTI-MSMS	OvCa99_classI_Rep5	1	543.811767578125	2	543.811313	1085.60807	-0.23552	-0.00012808	0.092995	5.0572E-05	-0.14253	-7.7508E-05	543.8112165245705	47.23	1.09	47.23	46.938	48.028	0					47	24	3	0	0	0	0.07097	1	3377	3377		106.68	0	1	2485900	+		21936	18165	17937	17960	24346	24346					0.06869397160471635
KAQILLSAIV	10	Unmodified	_KAQILLSAIV_					0	0	0			REV__ENST00000594286.5_1_19:53619136-53625671:-|nuORF	REV__ENST00000594286.5_1_19:53619136-53625671:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.2771606445312	2	528.344792	1054.67503	-0.6473	-0.000342	-0.56217	-0.00029702	-1.2095	-0.00063902	528.3444017084795	41.572	0.35032	41.572	41.33	41.681	0					13	7	2	0	0	0	0.02725	1	2620	2620		10.265	1.5716	1	74671	+		21937	27978	17938	17961	24347	24347					0.14988052442208755
KAQKARGPN	9	Unmodified	_KAQKARGPN_					0	0	0			REV__NOVA2|p.D128G|1|0.11|ENSG00000104967|chr19:45953793-45953793|T/C|missense_variant	REV__NOVA2|p.D128G|1|0.11|ENSG00000104967|chr19:45953793-45953793|T/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	485.28271484375	2	485.283057	968.551562	-1.9489	-0.00094577	1.6904	0.00082031	-0.25853	-0.00012546	485.2837680529316	35.087	1.3898	32.377	32.109	33.499	-2.7097					66	27	4	0	0	0	0.68424	1	1414	1414		21.96	1.4781	1	549360	+		21938	29260	17939	17962	24348	24348					0.06602814114467037
KAQLRTLE	8	Unmodified	_KAQLRTLE_					0	0	0			REV__ENSG00000122483|ENST00000690025|CCDC18	REV__ENSG00000122483|ENST00000690025|CCDC18	MULTI-MSMS	OvCa9_classI_Rep2	2	479.78521728515625	2	479.787641	957.56073	-2.7309	-0.0013103	2.326	0.001116	-0.40495	-0.00019429	479.7886280773358	36.925	0.73951	34.216	34.09	34.83	-2.7097					26	14	3	0	0	0	0.745	1	1633	1633		29.15	0	1	115520	+		21939	18600	17940	17963	24349	24349					0.08025162680144149
KAQQKMMEN	9	Unmodified	_KAQQKMMEN_					0	0	0			REV__tr|A0A553SLE5|A0A553SLE5_NIACISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_20475PE=4SV=1	REV__tr|A0A553SLE5|A0A553SLE5_NIACISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_20475PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.3182983398438	2	554.267901	1106.52125	1.6914	0.00093748	-2.4947	-0.0013827	-0.80332	-0.00044525	554.2666021330078	112.45	0.49831	112.45	112.16	112.66	0					16	10	2	0	0	0	0.027462	1	12820	12820		42.396	13.247	1	98155	+		21940	30216	17941	17964	24350	24350					-0.027750486572358568
KAQRLFRKYL	10	Unmodified	_KAQRLFRKYL_					0	0	0			REV__ENSG00000085999|ENST00000371975|RAD54L	REV__ENSG00000085999|ENST00000371975|RAD54L	MULTI-SECPEP	OvCa9_classI_Rep2	2	440.7479553222656	3	441.606701	1321.79827	1.9556	0.0008636	3.038	0.0013416	4.9936	0.0022052	441.60805728526594	43.275	1.2873	40.565	40.016	41.303	-2.7097					60	25	3	0	0	0	0.027298	1	2467	2467		16.717	0	1	76386	+		21941	17144	17942	17965	24351	24351					0.15024728613366278
KARFLRLL	8	Unmodified	_KARFLRLL_					0	0	0		ENST00000507493.1_1_4:515710-515999:+|nuORF;ENST00000513679.1_1_4:515547-515999:+|nuORF;ENST00000506402.5_1_4:514890-515999:+|nuORF	ENST00000507493.1_1_4:515710-515999:+|nuORF	ENST00000507493.1_1_4:515710-515999:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.8155822753906	2	508.840011	1015.66547	-0.79006	-0.00040201	-3.3546	-0.001707	-4.1447	-0.002109	508.83798028155627	75.208	0.14374	72.798	72.726	72.87	-2.4106					4	2	2	0	0	0	0.028476	1	3785	3785		13.775	0.81615	1	50254			21942	12908	17943	17966	24352	24352					0.1582632894735525
KARFLRLL	8	Unmodified	_KARFLRLL_					0	0	0		ENST00000507493.1_1_4:515710-515999:+|nuORF;ENST00000513679.1_1_4:515547-515999:+|nuORF;ENST00000506402.5_1_4:514890-515999:+|nuORF	ENST00000507493.1_1_4:515710-515999:+|nuORF	ENST00000507493.1_1_4:515710-515999:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.8161926269531	2	508.840011	1015.66547	-0.85802	-0.0004366	4.2191	0.0021468	3.3611	0.0017102	508.84197530717586	75.509	0.25769	73.099	72.919	73.177	-2.4106					6	4	2	0	0	0	0.028476	1	3815	3815		21.702	7.0382	1	12296			21943	12908	17943	17966	24353	24353					0.1582632894735525
KARGVIRR	8	Unmodified	_KARGVIRR_					0	0	0			REV__ENST00000594990.5_2_19:39936245-39943996:+|nuORF	REV__ENST00000594990.5_2_19:39936245-39943996:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.297607421875	2	478.317235	954.619916	0.027315	1.3065E-05	2.4953	0.0011935	2.5226	0.0012066	478.31840127351524	116.75	1.86	115.39	114.7	116.56	-1.3645					60	35	3	0	0	0	0.028476	1	10917	10917		31.955	0	1	130880	+		21944	24810	17944	17967	24354	24354					0.14079103484971256
KARKIVKNQF	10	Unmodified	_KARKIVKNQF_					0	0	0			REV__ENST00000295598.9_1_1:116926636-116926729:+|nuORF	REV__ENST00000295598.9_1_1:116926636-116926729:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	411.90728759765625	3	411.259302	1230.75608	1.6474	0.00067752	-3.6212	-0.0014893	-1.9738	-0.00081174	411.2577488998897	36.38	1.2459	33.531	32.94	34.186	-2.849					40	24	2	0	0	0	0.027325	1	1293	1293		11.097	0	1	18265	+		21945	24192	17945	17968	24355	24355					0.1499275320495599
KARKLLVEA	9	Unmodified	_KARKLLVEA_					0	0	0		ENST00000527505.1_1_11:27076962-27137060:+|nuORF;ENSG00000129151|ENST00000263182|BBOX1	ENST00000527505.1_1_11:27076962-27137060:+|nuORF	ENST00000527505.1_1_11:27076962-27137060:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	514.3369750976562	2	514.334759	1026.65496	-0.89644	-0.00046107	0.91869	0.00047252	0.02225	1.1444E-05	514.3351671460264	66.14	0.91231	66.14	65.904	66.816	0					57	22	4	0	0	0	0.50149	1	6133	6133		42.396	1.618	1	6876900			21946	3921	17946	17969	24356	24356					0.14270301502278926
KARKSYENQAE	11	Unmodified	_KARKSYENQAE_					0	0	0		ZFHX4|p.S2870Mfs*29|1|0.03|ENSG00000091656|chr8:76855527-76855545|CAAGCCCATCCATCCATTT/-|frameshift_variant;nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ENSG00000091656|ENST00000651372|ZFHX4	ZFHX4|p.S2870Mfs*29|1|0.03|ENSG00000091656|chr8:76855527-76855545|CAAGCCCATCCATCCATTT/-|frameshift_variant	ZFHX4|p.S2870Mfs*29|1|0.03|ENSG00000091656|chr8:76855527-76855545|CAAGCCCATCCATCCATTT/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	442.2351379394531	3	441.893236	1322.65788	0.275	0.00012152	-2.4519	-0.0010835	-2.1769	-0.00096196	441.89243838271193	53.764	0.64729	50.95	50.628	51.275	-2.8139					17	12	2	0	0	0	0.025298	1	3622	3622		43.419	0	1	11973			21947	1875	17947	17970	24357	24357					0.009454800984713074
KARLPLRLFL	10	Unmodified	_KARLPLRLFL_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	OvCa9_classI_Rep2	2	409.6082458496094	3	409.608042	1225.8023	0.6889	0.00028218	-0.83931	-0.00034379	-0.15041	-6.161E-05	409.60766459120623	104.29	12.102	103.72	103.28	115.38	-0.57639					699	244	5	0	0	0	0.66944	1	9905	9905		33.922	2.2874	1	1628000			21948	1958	17948	17971	24358	24358					0.1984281810707671
KARPLRCYIP	10	Unmodified	_KARPLRCYIP_					0	0	0		ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	MULTI-SECPEP	OvCa99_classI_Rep5	1	609.80029296875	2	608.852793	1215.69103	2.019	0.0012293	-3.8245	-0.0023286	-1.8055	-0.0010993	609.3524650410194	110.22	0.58745	110.22	109.95	110.54	0					14	10	2	0	0	0	0.026956	1	12492	12492		34.173	15.91	1	89382			21949	1658	17949	17972	24359	24359					0.09181435407481331
KARPLRCYIP	10	Unmodified	_KARPLRCYIP_					0	0	0		ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	MULTI-MATCH	OvCa9_classI_Rep2	2		2	608.852793	1215.69103	-0.3166	-0.00019276	-4.2021	-0.0025584	-4.5187	-0.0027512	608.850094793996	110.7	1.0373	110.56	110.29	111.32	-0.13961	0.10066	0.0012667	NaN	34.173	53	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166370			21950	1658	17949	17972							0.09181435407481331
KARPLRCYIP	10	Unmodified	_KARPLRCYIP_					0	0	0		ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	MULTI-MATCH	OvCa9_classI_Rep3	3		2	608.852793	1215.69103	3.0767	0.0018733	-7.5517	-0.0045979	-4.475	-0.0027246	608.8481144761631	111.63	1.0869	110.52	110.2	111.29	-1.1038	0.061579	-0.0028122	NaN	34.173	46	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170930			21951	1658	17949	17972							0.09181435407481331
KARQKLVKI	9	Unmodified	_KARQKLVKI_					0	0	0			REV__MKI67|p.K2670Nfs*23|1|0.03|ENSG00000148773|chr10:128103824-128103836|CTTTTCCTTAGGT/-|frameshift_variant	REV__MKI67|p.K2670Nfs*23|1|0.03|ENSG00000148773|chr10:128103824-128103836|CTTTTCCTTAGGT/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	542.3718872070312	2	542.371675	1082.7288	0.093673	5.0806E-05	-0.44981	-0.00024396	-0.35614	-0.00019316	542.3713013214245	41.12	2.1196	38.411	38.093	40.213	-2.7097					118	42	4	0	0	0	0.40667	1	2123	2123		51.335	5.3835	1	313610	+		21952	20125	17950	17973	24360	24360					0.19074269664611165
KARRRQMSR	9	Unmodified	_KARRRQMSR_					0	0	0		sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2;sp|F5HBR4|PORTL_HCMVMPortalproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL104PE=3SV=1	sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2	sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2	MULTI-MSMS	OvCa9_classI_Rep2	2	594.8452758789062	2	594.846365	1187.67818	-0.34669	-0.00020623	-1.237	-0.00073581	-1.5837	-0.00094204	594.8455284822322	78.84	1.3216	77.1	76.807	78.128	-1.7398					73	25	4	0	0	0	0.40818	1	6606	6606		51.193	0	1	277320			21953	32854	17951	17974	24361	24361					0.09184417067945105
KARRRQMSR	9	Unmodified	_KARRRQMSR_					0	0	0		sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2;sp|F5HBR4|PORTL_HCMVMPortalproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL104PE=3SV=1	sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2	sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	594.846365	1187.67818	0.63965	0.00038049	-2.0194	-0.0012012	-1.3797	-0.00082072	594.8451473219675	79.829	1.6288	77.489	77.103	78.732	-2.3399	0.16222	-0.00047526	NaN	51.193	86	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	466360			21954	32854	17951	17974							0.09184417067945105
KARRRQMSR	9	Unmodified	_KARRRQMSR_					0	0	0		sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2;sp|F5HBR4|PORTL_HCMVMPortalproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL104PE=3SV=1	sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2	sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	594.846365	1187.67818	-0.24859	-0.00014787	-1.4199	-0.00084465	-1.6685	-0.00099252	594.8454791497022	80.102	1.4191	77.392	77.075	78.494	-2.7106	0.064965	0.00023787	NaN	51.193	69	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	372620			21955	32854	17951	17974							0.09184417067945105
KARTGRTCLVV	11	Unmodified	_KARTGRTCLVV_					0	0	0		nc|ENSG00000004846|Q2M3G0-1|ABCB5;ENSG00000004846|ENST00000404938|ABCB5	nc|ENSG00000004846|Q2M3G0-1|ABCB5	nc|ENSG00000004846|Q2M3G0-1|ABCB5	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.19049072265625	3	401.90453	1202.69176	1.0742	0.00043173	0.63212	0.00025405	1.7063	0.00068578	401.90449480220644	33.454	0.54266	33.454	33.186	33.728	0					17	10	3	0	0	0	0.025668	1	1518	1518		28.577	5.054	1	101210			21956	834	17952	17975	24362	24362					0.09852230056503686
KARVEAAFEL	10	Unmodified	_KARVEAAFEL_					0	0	0		tr|A0A553SPS7|A0A553SPS7_NIACIXyloseisomeraseOS=NialliacirculansOX=1397GN=xylAPE=3SV=1	tr|A0A553SPS7|A0A553SPS7_NIACIXyloseisomeraseOS=NialliacirculansOX=1397GN=xylAPE=3SV=1	tr|A0A553SPS7|A0A553SPS7_NIACIXyloseisomeraseOS=NialliacirculansOX=1397GN=xylAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.318603515625	2	567.319306	1132.62406	-1.5919	-0.00090313	1.8841	0.0010689	0.29214	0.00016573	567.3204758129912	84.581	1.3452	83.034	82.745	84.091	-1.5462					89	26	5	0	0	0	0.40664	1	7306	7306		67.494	2.0283	1	1915100			21957	34078	17953	17976	24363	24363					0.06305103397380662
KARVTATHA	9	Unmodified	_KARVTATHA_					0	0	0			REV__ENSG00000179023|ENST00000400664|KLHDC7A	REV__ENSG00000179023|ENST00000400664|KLHDC7A	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.3059997558594	2	477.777608	953.540663	-0.3587	-0.00017138	0.4841	0.00023129	0.12541	5.9916E-05	477.7776661187969	40.102	0.54545	37.392	37.302	37.848	-2.7097					13	10	2	0	0	0	0.027462	1	2055	2055		23.042	0	1	13260	+		21958	22093	17954	17977	24364	24364					0.062034117401822186
KARWEPYE	8	Unmodified	_KARWEPYE_					0	0	0			REV__tr|A0A553SGD5|A0A553SGD5_NIACIAminopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_10680PE=3SV=1	REV__tr|A0A553SGD5|A0A553SGD5_NIACIAminopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_10680PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.83349609375	2	539.769448	1077.52434	-0.96651	-0.00052169	-3.7242	-0.0020102	-4.6907	-0.0025319	539.7672605623853	27.517	0.4499	27.517	27.241	27.691	0					16	8	2	0	0	0	0.028476	1	832	832		31.955	3.7006	1	79121	+		21959	29689	17955	17978	24365	24365					-0.01131714216603541
KARWPLGK	8	Unmodified	_KARWPLGK_					0	0	0			REV__ZNF831|p.K1267E|1|0.51|ENSG00000124203|chr20:59195929-59195929|A/G|missense_variant	REV__ZNF831|p.K1267E|1|0.51|ENSG00000124203|chr20:59195929-59195929|A/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.7828063964844	2	478.295436	954.57632	-0.62144	-0.00029723	-0.77482	-0.00037059	-1.3963	-0.00066783	478.29413313487373	53.533	0.21967	53.533	53.389	53.609	0					7	4	2	0	0	0	0.028476	1	4268	4268		24.203	4.8428	1	63072	+		21960	18673	17956	17979	24366	24366					0.09721493987842678
KASESRLER	9	Unmodified	_KASESRLER_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	OvCa99_classI_Rep5	1	538.2966918945312	2	538.296362	1074.57817	-0.44574	-0.00023994	-0.76432	-0.00041143	-1.2101	-0.00065137	538.2964385197961	24.497	1.0953	24.497	23.793	24.888	0					43	21	4	0	0	0	0.53483	1	450	450		39.253	1.4413	1	138230			21961	5150	17957	17980	24367	24367					0.0438645821514001
KASILNHK	8	Unmodified	_KASILNHK_					0	0	0			REV__chr5:64754362-64754578|109|11.12|0.33|5.07|-|2|TE_info:AluJr,AluJr_dup22332,Alu,SINE,donor,-,64754578,64754758|SREK1IP1,None|2	REV__chr5:64754362-64754578|109|11.12|0.33|5.07|-|2|TE_info:AluJr,AluJr_dup22332,Alu,SINE,donor,-,64754578,64754758|SREK1IP1,None|2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.7673034667969	2	455.777077	909.5396	1.1335	0.00051663	-1.3232	-0.0006031	-0.18973	-8.6474E-05	455.7762987813722	37.326	1.4937	34.434	34.092	35.586	-2.8925					50	29	2	0	0	0	0.028476	1	1459	1459		37.812	0	1	255350	+		21962	16064	17958	17981	24368	24368					0.08121197371269773
KASISSSSFL	10	Unmodified	_KASISSSSFL_					0	0	0		PROSER3|p.S218F|1|0.12|ENSG00000167595|chr19:35765060-35765060|C/T|missense_variant	PROSER3|p.S218F|1|0.12|ENSG00000167595|chr19:35765060-35765060|C/T|missense_variant	PROSER3|p.S218F|1|0.12|ENSG00000167595|chr19:35765060-35765060|C/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	513.7794189453125	2	513.776939	1025.53933	1.4059	0.0007223	4.2538	0.0021855	5.6597	0.0029078	513.7788425875743	123.02	0.27878	123.02	122.86	123.14	0					10	5	3	0	0	0	0.48198	1	14181	14181		56.721	1.2168	1	99927			21963	15524	17959	17982	24369	24369					0.027577328607549134
KASIVHML	8	Unmodified	_KASIVHML_					0	0	0			REV__tr|A0A553SI94|A0A553SI94_NIACISerinehydroxymethyltransferaseOS=NialliacirculansOX=1397GN=glyAPE=3SV=1	REV__tr|A0A553SI94|A0A553SI94_NIACISerinehydroxymethyltransferaseOS=NialliacirculansOX=1397GN=glyAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	449.76385498046875	2	449.762581	897.510608	5.9884	0.0026934	-1.6684	-0.00075039	4.32	0.001943	449.7616579337906	25.669	0.8354	22.96	22.778	23.613	-2.7097					39	19	3	0	0	0	0.75241	1	301	301		25.45	3.7478	1	137640	+		21964	29872	17960	17983	24370	24370					0.057753367506279574
KASKKKKRA	9	Unmodified	_KASKKKKRA_					0	0	0		ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;ENST00000528173.5_1_11:46391373-46400221:+|nuORF;nc|ENSG00000149091|Q13574-6|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;nc|ENSG00000149091|Q13574-1|DGKZ	ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-1|DGKZ	ENSG00000149091|ENST00000456247|DGKZ	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8148803710938	2	522.85365	1043.69275	1.1999	0.0006274	-0.76604	-0.00040053	0.4339	0.00022687	522.8536946911345	107.13	0.25389	107.13	107.06	107.31	0					7	5	2	0	0	0	0.027462	1	12094	12094		3.41	0	1	408690			21965	5440;15083	17961	17984	24371	24371					0.17264812487746894
KASKNFSIKRS	11	Unmodified	_KASKNFSIKRS_					0	0	0		STIL|p.R583Sfs*28|1|0.06|ENSG00000123473|chr1:47280709-47280710|-/A|frameshift_variant;STIL|p.S889Kfs*3|1|0.12|ENSG00000123473|chr1:47263048-47263063|TCTGCCAGCTGGCCAC/-|frameshift_variant;nc|ENSG00000123473|Q15468|STIL;ENSG00000123473|ENST00000371877|STIL	STIL|p.R583Sfs*28|1|0.06|ENSG00000123473|chr1:47280709-47280710|-/A|frameshift_variant	STIL|p.R583Sfs*28|1|0.06|ENSG00000123473|chr1:47280709-47280710|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	633.369384765625	2	633.369861	1264.72517	-4.8824	-0.0030923	3.9881	0.002526	-0.89421	-0.00056637	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.69424	1	13166	13166		31.634	8.1116	1	765700			21966	3597	17962	17985	24372	24372					0.10339555100085818
KASLQKVL	8	Unmodified	_KASLQKVL_					0	0	0			REV__ENSG00000165914|ENST00000328459|TTC7B	REV__ENSG00000165914|ENST00000328459|TTC7B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	444.2516174316406	2	443.789653	885.564752	-0.14707	-6.527E-05	-0.074649	-3.3128E-05	-0.22172	-9.8398E-05	443.78970031332665	65.108	0.67517	61.623	61.407	62.082	-3.4854					22	13	2	0	0	0	0.028476	1	4705	4705		37.159	0	1	92811	+		21967	21136	17963	17986	24373	24373					0.11739252173845216
KASLRELAL	9	Unmodified	_KASLRELAL_					0	0	0		ENST00000525522.5_1_11:494693-499199:-|nuORF;ENST00000525701.5_1_11:494693-500690:-|nuORF;ENSG00000023191|ENST00000354420|RNH1	ENST00000525522.5_1_11:494693-499199:-|nuORF	ENST00000525522.5_1_11:494693-499199:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	500.8097229003906	2	500.811116	999.60768	-0.87576	-0.00043859	0.50427	0.00025254	-0.37149	-0.00018605	500.811245172876	75.276	2.1877	72.865	72.488	74.676	-2.4106					100	42	3	0	0	0	0.084918	3	3805	3799;3805;3811		101.25	20.798	1	813300			21968	1036	17964	17987	24374;24375;24376	24375					0.10786022231263814
KASLRELAL	9	Unmodified	_KASLRELAL_					0	0	0		ENST00000525522.5_1_11:494693-499199:-|nuORF;ENST00000525701.5_1_11:494693-500690:-|nuORF;ENSG00000023191|ENST00000354420|RNH1	ENST00000525522.5_1_11:494693-499199:-|nuORF	ENST00000525522.5_1_11:494693-499199:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	500.811116	999.60768	-1.008	-0.00050482	0.70874	0.00035494	-0.29927	-0.00014988	500.8112578850797	75.095	1.7617	73.124	72.692	74.454	-1.9711	0.004261	0.00015417	NaN	101.25	85	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	576000			21969	1036	17964	17987							0.10786022231263814
KASLRELAL	9	Unmodified	_KASLRELAL_					0	0	0		ENST00000525522.5_1_11:494693-499199:-|nuORF;ENST00000525701.5_1_11:494693-500690:-|nuORF;ENSG00000023191|ENST00000354420|RNH1	ENST00000525522.5_1_11:494693-499199:-|nuORF	ENST00000525522.5_1_11:494693-499199:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	500.811116	999.60768	-0.58581	-0.00029338	0.54264	0.00027176	-0.043177	-2.1623E-05	500.81099326430797	76.31	1.5739	73.371	73.033	74.607	-2.9389	0.25075	-1.2199E-05	NaN	101.25	76	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	588390			21970	1036	17964	17987							0.10786022231263814
KASTKIKE	8	Unmodified	_KASTKIKE_					0	0	0		ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	MULTI-SECPEP	OvCa9_classI_Rep2	2	452.70458984375	2	452.776742	903.538931	2.3262	0.0010533	-1.9481	-0.00088205	0.37812	0.0001712	452.7756938569454	30.982	0.44221	28.273	28.15	28.592	-2.7097					11	8	2	0	0	0	0.028476	1	916	916		55.504	11.387	1	14081			21971	8900	17965	17988	24377	24377					0.08330357931561139
KASTSSNI	8	Unmodified	_KASTSSNI_					0	0	0			REV__Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|232|3|anti-sense	REV__Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|232|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.911865234375	2	404.213975	806.413397	0.93815	0.00037921	-3.1387	-0.0012687	-2.2005	-0.00088948	404.2129584443782	54.196	0.53141	54.196	53.891	54.422	0					20	12	3	0	0	0	0.028476	1	4333	4333		6.7355	0	1	199850	+		21972	28169	17966	17989	24378	24378					0.002446460753390056
KATEHLSTL	9	Unmodified	_KATEHLSTL_					0	0	0		ENSG00000118137|ENST00000236850|APOA1;APOA1|p.A218_K219insGAQN|1|0.24|ENSG00000118137|chr11:116835957-116835958|-/ATTCTGAGCACC|inframe_insertion	ENSG00000118137|ENST00000236850|APOA1	ENSG00000118137|ENST00000236850|APOA1	MULTI-MSMS	OvCa99_classI_Rep5	1	500.2768859863281	2	500.277106	998.53966	-0.67719	-0.00033878	0.42779	0.00021401	-0.2494	-0.00012477	500.2771236073005	42.391	0.68327	42.391	42.156	42.839	0					34	15	3	0	0	0	0.019133	1	2713	2713		148.04	33.457	1	1885500			21973	3289	17967	17990	24379	24379					0.04033152580609567
KATEYTAGT	9	Unmodified	_KATEYTAGT_					0	0	0			REV__tr|A0A553SF29|A0A553SF29_NIACIN-acetylmuramicacid6-phosphateetheraseOS=NialliacirculansOX=1397GN=murQPE=3SV=1	REV__tr|A0A553SF29|A0A553SF29_NIACIN-acetylmuramicacid6-phosphateetheraseOS=NialliacirculansOX=1397GN=murQPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	471.2333984375	2	471.232364	940.450176	-0.039352	-1.8544E-05	0.23086	0.00010879	0.19151	9.0247E-05	471.23232022324623	52.409	0.83239	52.409	52.083	52.915	0					40	18	3	0	0	0	0.48324	1	4103	4103		44.117	1.7207	1	2263800	+		21974	29532	17968	17991	24380	24380					-0.022431020987710326
KATFDIGL	8	Unmodified	_KATFDIGL_					0	0	0			REV__tr|A0A553SRS3|A0A553SRS3_NIACINa+/H+antiportersubunitAOS=NialliacirculansOX=1397GN=CEQ21_01800PE=3SV=1	REV__tr|A0A553SRS3|A0A553SRS3_NIACINa+/H+antiportersubunitAOS=NialliacirculansOX=1397GN=CEQ21_01800PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	431.89111328125	2	432.744911	863.475269	-0.064172	-2.777E-05	0.11396	4.9316E-05	0.049788	2.1545E-05	432.74479135618327	38.599	0.8973	38.599	38.254	39.151	0					30	19	2	0	0	0	0.028476	1	2164	2164		38.806	5.2906	1	115780	+		21975	30760	17969	17992	24381	24381					0.03806997494461939
KATFSTII	8	Unmodified	_KATFSTII_					0	0	0			REV__tr|A0A7D6ZZA7|A0A7D6ZZA7_9CLOTAmidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05555PE=4SV=1	REV__tr|A0A7D6ZZA7|A0A7D6ZZA7_9CLOTAmidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05555PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	440.7485046386719	2	440.760561	879.506569	1.7142	0.00075554	2.3465	0.0010342	4.0606	0.0017898	440.7617037406819	43.607	0.24641	40.898	40.808	41.054	-2.7097					6	4	2	0	0	0	0.028476	1	2440	2440		18.324	0	1	4978.5	+		21976	32403	17970	17993	24382	24382					0.06199570528588083
KATINLKYLS	10	Unmodified	_KATINLKYLS_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8430786132812	2	575.845156	1149.67576	-2.1491	-0.0012375	-1.4619	-0.00084184	-3.611	-0.0020794	575.8441928035448	141.47	4.0925	141.24	139.21	143.3	-0.22696					166	82	3	0	0	0	0.80581	1	14206	14206		18.262	0.89712	1	100260	+		21977	22791	17971	17994	24383	24383					0.10690847091291289
KATLIVHLR	9	Unmodified	_KATLIVHLR_					0	0	0		nc|ENSG00000196150|P15622-2|ZNF250;ENSG00000196150|ENST00000417550|ZNF250;nc|ENSG00000196150|P15622|ZNF250	nc|ENSG00000196150|P15622-2|ZNF250	nc|ENSG00000196150|P15622-2|ZNF250	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.3184814453125	2	525.842751	1049.67095	0.72115	0.00037921	-2.1198	-0.0011147	-1.3986	-0.00073545	525.8416680571514	86.031	0.74993	83.384	82.993	83.743	-2.6463					22	14	2	0	0	0	0.027462	1	7269	7269		19.997	0	1	19255			21978	8568	17972	17995	24384	24384					0.1481000773917458
KAVGQVVPDSV	11	Unmodified	_KAVGQVVPDSV_					0	0	0		tr|A0A7D6ZST1|A0A7D6ZST1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17115PE=4SV=1	tr|A0A7D6ZST1|A0A7D6ZST1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17115PE=4SV=1	tr|A0A7D6ZST1|A0A7D6ZST1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17115PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.8461303710938	2	549.811313	1097.60807	-0.86559	-0.00047591	-1.6854	-0.00092663	-2.5509	-0.0014025	549.8102367703023	28.667	0.34949	28.667	28.489	28.838	0					14	6	3	0	0	0	0.026089	1	941	941		29.17	6.1276	1	152180			21979	35742	17973	17996	24385	24385					0.06317397160455585
KAVKKLDAD	9	Unmodified	_KAVKKLDAD_					0	0	0		tr|A0A553SJC6|A0A553SJC6_NIACIMMPLfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_16535PE=3SV=1	tr|A0A553SJC6|A0A553SJC6_NIACIMMPLfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_16535PE=3SV=1	tr|A0A553SJC6|A0A553SJC6_NIACIMMPLfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_16535PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.30377197265625	2	494.295299	986.576045	-0.97833	-0.00048358	-0.96021	-0.00047463	-1.9385	-0.00095821	494.2947185876176	106.79	0.73271	104.91	104.54	105.28	-1.8785					16	13	2	0	0	0	0.027462	1	9743	9743		23.042	11.531	1	16442			21980	33490	17974	17997	24386	24386					0.08222029477326487
KAVKLFSDI	9	Unmodified	_KAVKLFSDI_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.E2391Hfs*33|1|0.06|ENSG00000139618|chr13:32355023-32355024|-/CATGCTTTGGGTACCTGTAATCCCAGCACTTTGGCAG|frameshift_variant;BRCA2|p.S2697Kfs*31|1|0.46|ENSG00000139618|chr13:32363289-32363304|TGAGCGCAAATATATC/-|frameshift_variant;BRCA2|p.L3172Afs*44|1|0.79|ENSG00000139618|chr13:32396908-32396911|TACT/-|frameshift_variant;BRCA2|p.M3322*|1|0.04|ENSG00000139618|chr13:32398476-32398476|G/-|frameshift_variant;BRCA2|p.K1406Nfs*3|1|0.62|ENSG00000139618|chr13:32338571-32338574|AAAG/-|frameshift_variant	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.3016357421875	2	510.808042	1019.60153	3.0048	0.0015349	-0.95481	-0.00048773	2.05	0.0010472	510.8073403801265	102.61	0.42603	102.61	102.38	102.81	0					13	9	2	0	0	0	0.027462	1	11467	11467		32.812	10.853	1	212980			21981	4788	17975	17998	24387	24387					0.09251503999746546
KAVKLWVI	8	Unmodified	_KAVKLWVI_					0	0	0		nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;SBNO1|p.L604*|1|0.19|ENSG00000139697|chr12:123326180-123326216|AGTTGCACAACCCTTTTAACTTTGGATGCTATGCATA/-|frameshift_variant;nc|ENSG00000139697|A3KN83-4|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-MSMS	OvCa99_classI_Rep5	1	478.8200378417969	2	478.818213	955.621873	2.0247	0.00096944	0.24599	0.00011778	2.2706	0.0010872	478.81815346855495	91.377	0.6177	91.377	91.135	91.753	0					33	14	3	0	0	0	0.62934	1	9848	9848		57.811	1.0902	1	852500			21982	4796	17976	17999	24388	24388					0.14228719450204608
KAVKQIGEP	9	Unmodified	_KAVKQIGEP_					0	0	0			REV__ENSG00000008405|ENST00000008527|CRY1	REV__ENSG00000008405|ENST00000008527|CRY1	MULTI-SECPEP	OvCa9_classI_Rep2	2	484.7985534667969	2	485.290017	968.565481	0.27255	0.00013226	0.50158	0.00024341	0.77413	0.00037568	485.29017016582856	96.563	0.44624	95.604	95.281	95.728	-0.95857					15	8	2	0	0	0	0.027462	1	8728	8728		21.96	6.3181	1	343280	+		21983	16455	17977	18000	24389	24389					0.07994046822898326
KAVKQIGEP	9	Unmodified	_KAVKQIGEP_					0	0	0			REV__ENSG00000008405|ENST00000008527|CRY1	REV__ENSG00000008405|ENST00000008527|CRY1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	485.290017	968.565481	-0.99466	-0.0004827	1.632	0.00079199	0.63733	0.00030929	485.29059947276954	97.408	0.4554	95.648	95.362	95.818	-1.7595	0.00080727	0.00095504	NaN	27.882	21	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	412440	+		21984	16455	17977	18000							0.07994046822898326
KAVLEVQVA	9	Unmodified	_KAVLEVQVA_					0	0	0		ENST00000285279.9_1_7:55540109-55540292:-|nuORF	ENST00000285279.9_1_7:55540109-55540292:-|nuORF	ENST00000285279.9_1_7:55540109-55540292:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	478.7931823730469	2	478.792392	955.570232	-0.51114	-0.00024473	-0.47899	-0.00022934	-0.99013	-0.00047407	478.79207532118255	82.802	1.8434	80.505	80.235	82.079	-2.2963					87	38	5	0	0	0	0.42676	1	4692	4692		49.442	0	1	1894200			21985	10074	17978	18001	24390	24390					0.09066930965650499
KAVLLLDN	8	Unmodified	_KAVLLLDN_					0	0	0		ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	ENSG00000183340|ENST00000332349|JRKL	MULTI-MSMS	OvCa9_classI_Rep2	2	443.2723388671875	2	443.273835	884.533118	0.83529	0.00037026	-3.8589	-0.0017105	-3.0236	-0.0013403	443.27205335230417	138.39	1.523	138.16	137.68	139.21	-0.22696					79	30	3	0	0	0	0.74229	1	13805	13805		30.504	0	1	138730			21986	8068	17979	18002	24391	24391					0.08623259419880469
KAVNPGRSL	9	Unmodified	_KAVNPGRSL_					0	0	0		nc|ENSG00000103429|Q9NZS9-2|BFAR;BFAR|p.I364Sfs*23|1|0.05|ENSG00000103429|chr16:14665001-14665001|A/-|frameshift_variant;ENSG00000103429|ENST00000261658|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-MSMS	OvCa99_classI_Rep5	1	471.2800598144531	2	471.279983	940.545414	-0.083464	-3.9335E-05	-1.0656	-0.00050219	-1.1491	-0.00054153	471.27973415532745	35.683	1.6548	35.683	35.052	36.707	0					66	35	5	0	0	0	0.041116	2	1828	1807;1828		125.81	51.559	1	4596800			21987	148	17980	18003	24392;24393	24393					0.0727629588294576
KAYATLILD	9	Unmodified	_KAYATLILD_					0	0	0		SACS|p.V3288Tfs*46|1|0.07|ENSG00000151835|chr13:23334014-23334015|-/TGAAGGGATACTTTTTGTAAGTACGT|frameshift_variant;ENSG00000151835|ENST00000382292|SACS;SACS|p.L2402Tfs*7|1|0.04|ENSG00000151835|chr13:23336672-23336673|-/T|frameshift_variant	SACS|p.V3288Tfs*46|1|0.07|ENSG00000151835|chr13:23334014-23334015|-/TGAAGGGATACTTTTTGTAAGTACGT|frameshift_variant	SACS|p.V3288Tfs*46|1|0.07|ENSG00000151835|chr13:23334014-23334015|-/TGAAGGGATACTTTTTGTAAGTACGT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.7721862792969	2	504.292225	1006.5699	2.7287	0.0013761	-0.39866	-0.00020104	2.3301	0.001175	504.79384472753856	99.256	0.36843	99.256	99.036	99.405	0					14	8	2	0	0	0	0.027462	1	10939	10939		26.693	0	1	251680			21988	5587	17981	18004	24394	24394					0.06687511245809219
KAYGKAKSI	9	Unmodified	_KAYGKAKSI_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	OvCa99_classI_Rep5	1	483.29205322265625	2	483.292559	964.570566	-0.8515	-0.00041153	0.79766	0.0003855	-0.053849	-2.6025E-05	483.29274413610375	26.831	0.4994	26.831	26.642	27.142	0					18	9	3	0	0	0	0.2422	1	739	739		69.628	18.292	1	150940			21989	8130	17982	18005	24395	24395					0.08686350685513844
KAYHEQLSV	9	Unmodified	_KAYHEQLSV_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENSG00000183785|ENST00000330423|TUBA8;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENST00000422086.5_2_22:21362941-21363382:-|nuORF;ENST00000442739.1_1_22:21357241-21363382:-|nuORF;ENST00000442868.1_1_1:202822165-202825009:-|nuORF;TUBA8|p.E290K|1|0.34|ENSG00000183785|chr22:18126846-18126846|G/A|missense_variant;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D	ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A	ENSG00000167552|ENST00000301071|TUBA1A	MULTI-MSMS	OvCa99_classI_Rep5	1	537.7826538085938	2	537.782556	1073.55056	-0.37169	-0.00019989	-0.40307	-0.00021676	-0.77475	-0.00041665	537.7823334162829	47.961	1.6489	47.961	47.638	49.287	0					102	36	6	0	0	0	0.030867	2	3496	3474;3496		134.77	35.873	1	26152000			21990	3593;6805	17983	18006	24396;24397	24397					0.01672554954870975
KAYHEQLSV	9	Unmodified	_KAYHEQLSV_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENSG00000183785|ENST00000330423|TUBA8;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENST00000422086.5_2_22:21362941-21363382:-|nuORF;ENST00000442739.1_1_22:21357241-21363382:-|nuORF;ENST00000442868.1_1_1:202822165-202825009:-|nuORF;TUBA8|p.E290K|1|0.34|ENSG00000183785|chr22:18126846-18126846|G/A|missense_variant;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D	ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A	ENSG00000167552|ENST00000301071|TUBA1A	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.783447265625	2	537.782556	1073.55056	-1.4192	-0.00076321	1.6515	0.00088813	0.23229	0.00012492	537.7831411016017	52.835	1.4106	49.627	49.094	50.505	-3.208					76	27	5	0	0	0	0.24899	1	3197	3197		68.846	7.8742	1	511280			21991	3593;6805	17983	18006	24398	24398					0.01672554954870975
KAYHEQLTV	9	Unmodified	_KAYHEQLTV_					0	0	0		ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000167553|ENST00000301072|TUBA1C	MULTI-MSMS	OvCa99_classI_Rep5	1	544.7879028320312	2	544.790381	1087.56621	-0.47149	-0.00025687	0.073321	3.9945E-05	-0.39817	-0.00021692	544.7903600889624	49.141	0.91779	49.141	48.895	49.813	0					55	20	4	0	0	0	0.066102	2	3638	3638;3660		109.48	26.728	1	7621900			21992	6806	17984	18007	24399;24400	24399					0.02592841471914653
KAYHEQLTV	9	Unmodified	_KAYHEQLTV_					0	0	0		ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000167553|ENST00000301072|TUBA1C	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.7918090820312	2	544.790381	1087.56621	-1.3996	-0.00076248	1.1638	0.000634	-0.23583	-0.00012848	544.7909643849708	54.096	1.2817	50.848	50.517	51.798	-3.2474					45	24	4	0	0	0	0.14855	1	3332	3332		85.161	30.385	1	652890			21993	6806	17984	18007	24401	24401					0.02592841471914653
KAYLVIKQV	9	Unmodified	_KAYLVIKQV_					0	0	0			REV__nc|ENSG00000141367|Q00610-2|CLTC	REV__nc|ENSG00000141367|Q00610-2|CLTC	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.3095092773438	2	531.33951	1060.66447	2.1448	0.0011396	-1.9039	-0.0010116	0.2409	0.000128	531.8408362044893	93.935	0.42143	93.935	93.673	94.094	0					19	9	3	0	0	0	0.027448	1	10204	10204		44.117	10.601	1	420900	+		21994	19729	17985	18008	24402	24402					0.13656069787793967
KAYSEAHEI	9	Unmodified	_KAYSEAHEI_					0	0	0		ENSG00000170027|ENST00000307630|YWHAG	ENSG00000170027|ENST00000307630|YWHAG	ENSG00000170027|ENST00000307630|YWHAG	MULTI-MSMS	OvCa99_classI_Rep5	1	524.259033203125	2	524.258914	1046.50327	-1.2612	-0.00066117	0.61552	0.00032269	-0.64564	-0.00033848	524.2591758648362	37.091	0.91642	37.091	36.751	37.668	0					53	19	5	0	0	0	0.060996	2	1999	1999;2022		112.41	40.533	1	1926300			21995	7066	17986	18009	24403;24404	24403					-0.018117243160986618
KCAHILKQV	9	Unmodified	_KCAHILKQV_					0	0	0		ENST00000599145.1_1_19:58927211-58927334:+|nuORF	ENST00000599145.1_1_19:58927211-58927334:+|nuORF	ENST00000599145.1_1_19:58927211-58927334:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	520.3048095703125	2	520.307687	1038.60082	-4.8818	-0.0025401	0.14268	7.4237E-05	-4.7391	-0.0024658	520.3076056055337	152.59	1.7718	151.62	150.74	152.51	-0.97301					83	35	4	0	0	0	0.31747	2	13031	13021;13031		60.972	7.6205	1	460690			21996	14203	17987	18010	24405;24406	24406					0.08306386079061667
KCCGCGDRVL	10	Unmodified	_KCCGCGDRVL_					0	0	0			REV__ENSG00000142871|ENST00000451137|CCN1	REV__ENSG00000142871|ENST00000451137|CCN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2859497070312	2	527.235547	1052.45654	-0.55552	-0.00029289	4.3936	0.0023165	3.8381	0.0020236	527.2377644172033	51.682	2.8841	51.682	51.164	54.048	0					144	67	3	0	0	0	0.026551	1	3976	3976		51.193	7.0759	1	830670	+		21997	19808	17988	18011	24407	24407					-0.06758946734908022
KCCKADDKETC	11	Unmodified	_KCCKADDKETC_					0	0	0		nc|ENSG00000163631|P02768-3|ALB;nc|ENSG00000163631|P02768-2|ALB;ENSG00000163631|ENST00000295897|ALB;CON__P02768-1	nc|ENSG00000163631|P02768-3|ALB	nc|ENSG00000163631|P02768-3|ALB	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.2347412109375	3	415.175369	1242.50428	-0.62079	-0.00025773	-3.6851	-0.0015299	-4.3058	-0.0017877	415.5080536032285	43.798	0.38589	43.798	43.694	44.08	0					9	8	2	0	0	0	0.026033	1	2927	2927		17.167	10.148	1	15455		+	21998	617	17989	18012	24408	24408					-0.1072733732537472
KCGFLPGNEKV	11	Carbamidomethyl (C)	_KC(Carbamidomethyl (C))GFLPGNEKV_	KC(1)GFLPGNEKV		KC(55)GFLPGNEKV		0	1	0		ENST00000471700.6_1_14:24612807-24615772:-|nuORF;ENSG00000100911|ENST00000216802|PSME2;ENST00000558931.5_1_14:24614221-24614398:-|nuORF	ENST00000471700.6_1_14:24612807-24615772:-|nuORF	ENST00000471700.6_1_14:24612807-24615772:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	624.8241577148438	2	624.823898	1247.63324	2.6334	0.0016454	-0.1076	-6.7228E-05	2.5258	0.0015782	624.8236981162514	107.73	1.018	107.73	107.48	108.5	0					58	23	4	0	0	0	0.48812	1	12212	12212		54.722	6.7628	1	2981500			21999	2121	17990	18013	24409	24409	17				0.019331286913711665
KCGHKISAR	9	Unmodified	_KCGHKISAR_					0	0	0		tr|A0A7D7A2N6|A0A7D7A2N6_9CLOTTniQfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20760PE=4SV=1	tr|A0A7D7A2N6|A0A7D7A2N6_9CLOTTniQfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20760PE=4SV=1	tr|A0A7D7A2N6|A0A7D7A2N6_9CLOTTniQfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20760PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.8111877441406	2	500.27946	998.544368	-1.0592	-0.00052989	-3.5438	-0.0017729	-4.603	-0.0023028	500.2775768983931	47.984	0.74565	45.274	45.034	45.779	-2.7097					17	14	2	0	0	0	0.027462	1	2952	2952		44.117	13.799	1	15331			22000	36087	17991	18014	24410	24410					0.04503758242390177
KCHFGYKP	8	Unmodified	_KCHFGYKP_					0	0	0		CON__Q28065	CON__Q28065	CON__Q28065	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.26953125	2	490.244555	978.474557	0.5487	0.000269	1.6915	0.00082924	2.2402	0.0010982	490.2452806381481	60.145	1.1351	56.715	56.21	57.345	-3.43					64	22	4	0	0	0	0.028476	1	3993	3993		26.796	7.4361	1	261750		+	22001	637	17992	18015	24411	24411					-0.015541204262262909
KCHVIAAVLL	10	Unmodified	_KCHVIAAVLL_					0	0	0			REV__ENSG00000172478|ENST00000388934|MAB21L4	REV__ENSG00000172478|ENST00000388934|MAB21L4	MULTI-SECPEP	OvCa9_classI_Rep2	2	533.7977905273438	2	533.825712	1065.63687	-0.036659	-1.957E-05	2.9952	0.0015989	2.9585	0.0015793	533.8272679226365	66.042	0.84386	63.346	63.121	63.965	-2.6958					28	16	3	0	0	0	0.027117	1	5077	5077		16.473	4.2663	1	60267	+		22002	21703	17993	18016	24412	24412					0.10667843255919252
KCIFTVLIV	9	Unmodified	_KCIFTVLIV_					0	0	0		PKDREJ|p.H2048Tfs*3|1|0.05|ENSG00000130943|chr22:46257182-46257182|A/-|frameshift_variant;ENSG00000130943|ENST00000253255|PKDREJ	PKDREJ|p.H2048Tfs*3|1|0.05|ENSG00000130943|chr22:46257182-46257182|A/-|frameshift_variant	PKDREJ|p.H2048Tfs*3|1|0.05|ENSG00000130943|chr22:46257182-46257182|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	519.8214111328125	2	518.317189	1034.61982	0.49653	0.00025736	1.4806	0.0007674	1.9771	0.0010248	518.3179257681784	139.8	5.0824	139.8	139.03	144.11	0					338	103	5	0	0	0	0.50149	1	16733	16733		42.396	8.8806	1	7167300			22003	4028	17994	18017	24413	24413					0.10389922650097105
KCITKTKAF	9	Unmodified	_KCITKTKAF_					0	0	0		nc|ENSG00000239732|Q9NR96-2|TLR9;nc|ENSG00000239732|Q9NR96-5|TLR9;ENSG00000239732|ENST00000360658|TLR9;nc|ENSG00000239732|Q9NR96-3|TLR9;nc|ENSG00000239732|Q9NR96-4|TLR9;PCBP4-TLR9|1|fusion	nc|ENSG00000239732|Q9NR96-2|TLR9	nc|ENSG00000239732|Q9NR96-2|TLR9	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3032836914062	2	520.30207	1038.58959	0.87614	0.00045586	2.463	0.0012815	3.3391	0.0017373	520.3032319005173	43.248	1.2895	40.538	40.213	41.502	-2.7097					78	25	5	0	0	0	0.51865	1	2379	2379		40.778	8.8233	1	428250			22004	9330	17995	18018	24414	24414					0.0718356398490414
KCKCSSVVI	9	Unmodified	_KCKCSSVVI_					0	0	0			REV__ENSG00000139350|ENST00000266742|NEDD1	REV__ENSG00000139350|ENST00000266742|NEDD1	MULTI-MSMS	OvCa9_classI_Rep3	3	483.7576904296875	2	483.759181	965.503808	-0.55004	-0.00026609	-1.9232	-0.00093039	-2.4733	-0.0011965	483.7581117979979	133.25	1.079	132.13	131.88	132.96	-1.1249					46	21	3	0	0	0	0.5811	1	10698	10698		34.173	2.2177	1	117690	+		22005	19604	17996	18019	24415	24415					0.019676558077435402
KCKIVLLLF	9	Unmodified	_KCKIVLLLF_					0	0	0			REV__tr|A0A7D6VS56|A0A7D6VS56_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08105PE=4SV=1	REV__tr|A0A7D6VS56|A0A7D6VS56_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08105PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.8628540039062	2	538.848656	1075.68276	0.46046	0.00024812	-1.2455	-0.00067115	-0.78506	-0.00042303	538.8474512906923	133.71	0.29564	132.59	132.52	132.81	-1.1226					6	5	2	0	0	0	0.027462	1	10754	10754		18.324	0	1	19851	+		22006	31470	17997	18020	24416	24416					0.14794488438155895
KCKRGRTSI	9	Unmodified	_KCKRGRTSI_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.2958374023438	2	524.805842	1047.59713	-0.18767	-9.849E-05	-1.327	-0.00069639	-1.5146	-0.00079488	524.8049714423529	113.09	0.74187	111.64	111.36	112.1	-1.4461					19	14	2	0	0	0	0.027462	1	10511	10511		19.997	4.355	1	45316	+		22007	17630	17998	18021	24417	24417					0.07523716305217931
KCLFHLLN	8	Unmodified	_KCLFHLLN_					0	0	0			REV__ENST00000552000.2_1_17:46681925-46682093:-|nuORF	REV__ENST00000552000.2_1_17:46681925-46682093:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.3243713378906	2	494.275855	986.537157	-0.57747	-0.00028543	2.7286	0.0013487	2.1511	0.0010632	494.27697622446135	80.284	1.163	77.573	76.791	77.954	-2.7106					54	23	3	0	0	0	0.028476	1	6493	6493		40.573	0	1	292180	+		22008	27490	17999	18022	24418	24418					0.04335025641955781
KCLGKEDI	8	Unmodified	_KCLGKEDI_					0	0	0		nc|ENSG00000073605|Q8TAX9-5|GSDMB;nc|ENSG00000073605|Q8TAX9-2|GSDMB;nc|ENSG00000073605|Q8TAX9-3|GSDMB;nc|ENSG00000073605|Q8TAX9-6|GSDMB;nc|ENSG00000073605|Q8TAX9-1|GSDMB;ENSG00000073605|ENST00000418519|GSDMB	nc|ENSG00000073605|Q8TAX9-5|GSDMB	nc|ENSG00000073605|Q8TAX9-5|GSDMB	MULTI-SECPEP	OvCa99_classI_Rep5	1	453.7651062011719	2	453.241678	904.468803	-0.58206	-0.00026381	-3.2498	-0.001473	-3.8319	-0.0017368	453.2400182552562	66.028	0.49744	66.028	65.831	66.328	0					21	12	2	0	0	0	0.028476	1	6086	6086		40.778	1.972	1	731160			22009	1494	18000	18023	24419	24419					0.012747362714321753
KCLKLVFGFST	11	Unmodified	_KCLKLVFGFST_					0	0	0		ENST00000333219.8_1_13:111366016-111366232:+|nuORF	ENST00000333219.8_1_13:111366016-111366232:+|nuORF	ENST00000333219.8_1_13:111366016-111366232:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	621.8506469726562	2	621.849384	1241.68422	1.1955	0.00074343	1.4701	0.00091419	2.6656	0.0016576	621.8502830657769	71.677	2.3262	69.075	68.633	70.959	-2.6023					129	46	4	0	0	0	0.70142	1	3381	3381		29.17	1.2878	1	908440			22010	10466	18001	18024	24420	24420					0.07304077736239378
KCLLVVISLY	10	Unmodified	_KCLLVVISLY_					0	0	0			REV__nc|ENSG00000170921|Q9HCD6-3|TANC2	REV__nc|ENSG00000170921|Q9HCD6-3|TANC2	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.81982421875	2	575.848853	1149.68315	-1.4096	-0.00081173	2.3641	0.0013614	0.95446	0.00054962	575.8500168526143	102.12	0.31425	100.6	100.37	100.69	-1.5211					6	5	2	0	0	0	0.026734	1	6997	6997		39.253	0	1	7140.7	+		22011	21577	18002	18025	24421	24421					0.1142986336735703
KCLSSDKKSGP	11	Unmodified	_KCLSSDKKSGP_					0	0	0			REV__nc|ENSG00000091513|P02787|TF	REV__nc|ENSG00000091513|P02787|TF	MULTI-MSMS	OvCa9_classI_Rep3	3	575.2992553710938	2	575.300255	1148.58596	-0.91231	-0.00052485	-2.4275	-0.0013965	-3.3398	-0.0019214	575.2987938975226	98.512	0.72591	96.752	96.417	97.143	-1.7595					43	13	4	0	0	0	0.25285	1	6587	6587		72.879	6.45	1	1521200	+		22012	17251	18003	18026	24422	24422					0.017608494203841474
KCNLDFLH	8	Unmodified	_KCNLDFLH_					0	0	0			REV__ENSG00000101191|ENST00000395343|DIDO1	REV__ENSG00000101191|ENST00000395343|DIDO1	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.24847412109375	2	495.247295	988.480036	-0.63667	-0.00031531	2.7633	0.0013685	2.1266	0.0010532	495.24855946934025	124.08	1.1711	122.69	122.42	123.59	-1.3908					49	22	3	0	0	0	0.74971	1	11762	11762		26.796	0.10319	1	110610	+		22013	17477	18004	18027	24423	24423					-0.014664416344203346
KCPPPCCKN	9	Unmodified	_KCPPPCCKN_					0	0	0			REV__ENSG00000100249|ENST00000216071|C22orf31	REV__ENSG00000100249|ENST00000216071|C22orf31	MULTI-MSMS	OvCa99_classI_Rep5	1	495.2283935546875	2	495.221908	988.429263	0.92079	0.00045599	4.3236	0.0021411	5.2444	0.0025971	495.22399736127926	132.63	0.43243	132.63	132.41	132.84	0					15	8	2	0	0	0	0.55588	1	15420	15420		37.159	8.9048	1	81088	+		22014	17387	18005	18028	24424	24424					-0.0654143027528562
KCRKSFNQL	9	Unmodified	_KCRKSFNQL_					0	0	0		ENSG00000197841|ENST00000492450|ZNF181;nc|ENSG00000197841|Q2M3W8-2|ZNF181;nc|ENSG00000197841|Q2M3W8-3|ZNF181	ENSG00000197841|ENST00000492450|ZNF181	ENSG00000197841|ENST00000492450|ZNF181	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.76611328125	2	562.305675	1122.5968	-0.71497	-0.00040203	-4.1762	-0.0023483	-4.8911	-0.0027503	562.3036400023086	43.724	0.38737	43.724	43.521	43.909	0					19	8	3	0	0	0	0.027461	1	2900	2900		49.442	13.823	1	117870			22015	8753	18006	18029	24425	24425					0.040402965853445494
KCRLEGTKK	9	Unmodified	_KCRLEGTKK_					0	0	0		nc|ENSG00000152583|Q14515-2|SPARCL1;ENSG00000152583|ENST00000282470|SPARCL1	nc|ENSG00000152583|Q14515-2|SPARCL1	nc|ENSG00000152583|Q14515-2|SPARCL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8058471679688	2	531.808051	1061.60155	-1.8902	-0.0010052	-2.0642	-0.0010978	-3.9544	-0.002103	531.806891935509	41.675	2.0149	38.695	38.023	40.037	-2.9804					85	38	5	0	0	0	0.11471	1	1906	1906		93.195	2.4188	1	829150			22016	5633	18007	18030	24426	24426					0.07321180728104082
KCRTVEAARKK	11	Unmodified	_KCRTVEAARKK_					0	0	0		ENST00000525875.1_1_11:62201326-62284770:-|nuORF	ENST00000525875.1_1_11:62201326-62284770:-|nuORF	ENST00000525875.1_1_11:62201326-62284770:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	645.3763427734375	2	645.377163	1288.73977	-0.097692	-6.3048E-05	-3.619	-0.0023356	-3.7167	-0.0023986	645.3747709262667	55.828	1.3173	52.533	52.26	53.577	-3.2944					74	25	4	0	0	0	0.4397	1	3551	3551		58.246	8.2127	1	726230			22017	13203	18008	18031	24427	24427					0.10695303976535797
KCWRGGPVI	9	Unmodified	_KCWRGGPVI_					0	0	0		ENST00000303892.9_1_6:31514477-31514555:-|nuORF	ENST00000303892.9_1_6:31514477-31514555:-|nuORF	ENST00000303892.9_1_6:31514477-31514555:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.8012390136719	2	508.278929	1014.54331	0.017407	8.8476E-06	2.7179	0.0013814	2.7353	0.0013903	508.2803057830834	45.091	0.66932	45.091	44.662	45.332	0					26	14	2	0	0	0	0.027462	1	3102	3102		38.806	17.104	1	340930			22018	10219	18009	18032	24428	24428					0.036615438734884265
KDAAITLKA	9	Unmodified	_KDAAITLKA_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000526423.1_1_11:46700589-46702208:-|nuORF	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.7491760253906	2	465.784567	929.554582	2.9165	0.0013585	-0.67329	-0.00031361	2.2432	0.0010449	465.7842423225672	87.969	0.50024	87.969	87.671	88.171	0					17	11	2	0	0	0	0.027137	1	9354	9354		49.536	0	1	370890			22019	7526	18010	18033	24429	24429					0.08698644448600135
KDAATIKLPV	10	Unmodified	_KDAATIKLPV_					0	0	0		ENSG00000205133|ENST00000521988|TRIQK	ENSG00000205133|ENST00000521988|TRIQK	ENSG00000205133|ENST00000521988|TRIQK	MULTI-MSMS	OvCa9_classI_Rep3	3	528.3221435546875	2	528.326599	1054.63865	0.33475	0.00017686	3.4023	0.0017975	3.7371	0.0019744	528.3282724916941	128.79	3.3005	127.69	127.27	130.57	-1.0933					188	66	4	0	0	0	0.6104	1	10358	10358		40.778	3.6191	1	235110			22020	9054	18011	18034	24430	24430					0.11351175545496517
KDAATIKLPV	10	Unmodified	_KDAATIKLPV_					0	0	0		ENSG00000205133|ENST00000521988|TRIQK	ENSG00000205133|ENST00000521988|TRIQK	ENSG00000205133|ENST00000521988|TRIQK	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.3228759765625	2	528.326599	1054.63865	0.83538	0.00044135	2.7832	0.0014704	3.6186	0.0019118	528.3278477712166	129.01	4.1824	127.56	127.15	131.33	-1.4565					215	84	4	0	0	0	0.59703	1	12635	12635		42.396	8.2236	1	383740			22021	9054	18011	18034	24431	24431					0.11351175545496517
KDAIFIVRR	9	Unmodified	_KDAIFIVRR_					0	0	0			REV__ENSG00000146966|ENST00000496613|DENND2A	REV__ENSG00000146966|ENST00000496613|DENND2A	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.2672729492188	2	559.345658	1116.67676	2.7311	0.0015276	-1.4707	-0.00082264	1.2604	0.000705	559.3448730187515	86.952	1.4328	86.952	86.113	87.546	0					43	34	2	0	0	0	0.027462	1	9157	9157		37.812	15.852	1	3072800	+		22022	20036	18012	18035	24432	24432					0.12309106250813784
KDAIGGESMPI	11	Unmodified	_KDAIGGESMPI_					0	0	0		nc|ENSG00000115421|Q9BWT3-2|PAPOLG	nc|ENSG00000115421|Q9BWT3-2|PAPOLG	nc|ENSG00000115421|Q9BWT3-2|PAPOLG	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.2672729492188	2	559.281531	1116.54851	2.6453	0.0014795	-2.7754	-0.0015522	-0.13003	-7.2721E-05	559.2799239195648	86.989	0.61867	86.989	86.679	87.298	0					29	14	3	0	0	0	0.025265	1	9157	9157		42.864	8.6917	1	1309700			22023	14975	18013	18036	24433	24433					-0.005102418451997437
KDAIRGAQQ	9	Unmodified	_KDAIRGAQQ_					0	0	0			REV__tr|A0A7D6W3I6|A0A7D6W3I6_9CLOTPhosphateABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=pstBPE=4SV=1	REV__tr|A0A7D6W3I6|A0A7D6W3I6_9CLOTPhosphateABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=pstBPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.79962158203125	2	493.772522	985.530492	-0.75457	-0.00037259	0.60367	0.00029807	-0.15091	-7.4513E-05	493.7728458629533	49.321	0.69373	49.321	49.119	49.813	0					34	15	3	0	0	0	0.02744	1	3704	3704		36.447	15.5	1	723190	+		22024	31917	18014	18037	24434	24434					0.03714804014941819
KDAKGISI	8	Unmodified	_KDAKGISI_					0	0	0		nc|ENSG00000158163|Q8IYY4-2|DZIP1L;ENSG00000158163|ENST00000327532|DZIP1L	nc|ENSG00000158163|Q8IYY4-2|DZIP1L	nc|ENSG00000158163|Q8IYY4-2|DZIP1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	416.1554260253906	2	416.25036	830.486168	0.22396	9.3223E-05	-0.16987	-7.0707E-05	0.054093	2.2516E-05	416.25018267464964	55.823	1.145	55.823	55.599	56.744	0					52	27	4	0	0	0	0.028476	1	4718	4718		17.365	0	1	5996200			22025	5937	18015	18038	24435	24435					0.06414399868754117
KDAKIKIY	8	Unmodified	_KDAKIKIY_					0	0	0			REV__tr|A0A553SQ97|A0A553SQ97_NIACIChaperoneproteinHtpGOS=NialliacirculansOX=1397GN=htpGPE=3SV=1	REV__tr|A0A553SQ97|A0A553SQ97_NIACIChaperoneproteinHtpGOS=NialliacirculansOX=1397GN=htpGPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.2698059082031	2	489.80276	977.590967	1.2673	0.00062072	0.45252	0.00022164	1.7198	0.00084237	489.8028936403499	123.08	0.2795	123.08	122.95	123.23	0					9	5	2	0	0	0	0.028476	1	14191	14191		31.955	3.7006	1	62990	+		22026	30617	18016	18039	24436	24436					0.10127521345316381
KDAKSVKIK	9	Unmodified	_KDAKSVKIK_					0	0	0		ENSG00000172809|ENST00000311111|RPL38	ENSG00000172809|ENST00000311111|RPL38	ENSG00000172809|ENST00000311111|RPL38	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.78643798828125	2	508.826766	1015.63898	3.842	0.0019549	2.0731	0.0010549	5.9151	0.0030098	508.8277196036924	88.323	0.46564	88.323	88.171	88.637	0					24	10	3	0	0	0	0.027462	1	9378	9378		37.812	2.6595	1	944080			22027	7320	18017	18040	24437	24437					0.1317859526537859
KDALWKVL	8	Unmodified	_KDALWKVL_					0	0	0		ENSG00000172320|ENST00000641045|OR5A1	ENSG00000172320|ENST00000641045|OR5A1	ENSG00000172320|ENST00000641045|OR5A1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.3165283203125	2	486.797478	971.580402	-1.3488	-0.00065659	-3.3406	-0.0016262	-4.6894	-0.0022828	486.7957975902143	50.407	0.82677	47.265	47.026	47.853	-3.1416					43	15	4	0	0	0	0.028476	1	2955	2955		58.782	18.004	1	348460			22028	7289	18018	18041	24438	24438					0.09347538690883539
KDAMAQPLR	9	Unmodified	_KDAMAQPLR_					0	0	0			REV__ENST00000476365.2_1_20:30777007-30778297:-|nuORF	REV__ENST00000476365.2_1_20:30777007-30778297:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2726440429688	2	515.279126	1028.5437	-0.82501	-0.00042511	3.6992	0.0019061	2.8742	0.001481	515.2809500844181	59.666	0.70103	59.666	59.452	60.153	0					26	17	2	0	0	0	0.027462	1	5168	5168		53.351	21.397	1	1199000	+		22029	26370	18019	18042	24439	24439					0.030569188026674965
KDANGKEVLL	10	Unmodified	_KDANGKEVLL_					0	0	0		tr|A0A553SM86|A0A553SM86_NIACIDihydrolipoyldehydrogenaseOS=NialliacirculansOX=1397GN=lpdAPE=3SV=1	tr|A0A553SM86|A0A553SM86_NIACIDihydrolipoyldehydrogenaseOS=NialliacirculansOX=1397GN=lpdAPE=3SV=1	tr|A0A553SM86|A0A553SM86_NIACIDihydrolipoyldehydrogenaseOS=NialliacirculansOX=1397GN=lpdAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	543.8181762695312	2	543.811313	1085.60807	1.8906	0.0010281	3.6112	0.0019638	5.5018	0.002992	543.8132257634019	134.2	0.46277	134.2	134.06	134.52	0					17	9	3	0	0	0	0.47142	1	15642	15642		58.23	3.4536	1	370040			22030	33810	18020	18043	24440	24440					0.06869397160448898
KDAQAKLDEL	10	Unmodified	_KDAQAKLDEL_					0	0	0		ENSG00000170484|ENST00000305620|KRT74;CON__Q7RTS7	ENSG00000170484|ENST00000305620|KRT74	ENSG00000170484|ENST00000305620|KRT74	MULTI-MSMS	OvCa9_classI_Rep2	2	565.807861328125	2	565.806228	1129.5979	1.7532	0.00099197	2.4612	0.0013926	4.2144	0.0023846	565.8074365868912	89.847	1.9606	88.545	88.087	90.047	-1.302					77	37	4	0	0	0	0.33877	1	7921	7921		76.17	7.3235	1	358310		+	22031	656	18021	18044	24441	24441					0.03828789435215185
KDARKGPLVP	10	Unmodified	_KDARKGPLVP_					0	0	0		ENST00000437519.5_1_12:123868737-123892247:+|nuORF;ENSG00000183955|ENST00000402868|KMT5A;nc|ENSG00000183955|Q9NQR1|KMT5A;SETD8-RILPL2|1|fusion	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	540.8317260742188	2	540.82984	1079.64513	-0.46856	-0.00025341	3.3565	0.0018153	2.8879	0.0015619	540.8317360682152	123.45	3.5017	123.21	122.89	126.4	-0.23193					177	70	5	0	0	0	0.49558	16	11985	11962;11985;11997;12009;12015;12033;12039;12045;12051;12063;12069;12075;12093;12099;12106;12120		54.776	12.38	1	7794400			22032	8124	18022	18045	24442;24443;24444;24445;24446;24447;24448;24449;24450;24451;24452;24453;24454;24455;24456;24457	24443					0.10849113496919927
KDARKGPLVP	10	Unmodified	_KDARKGPLVP_					0	0	0		ENST00000437519.5_1_12:123868737-123892247:+|nuORF;ENSG00000183955|ENST00000402868|KMT5A;nc|ENSG00000183955|Q9NQR1|KMT5A;SETD8-RILPL2|1|fusion	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	540.8309936523438	2	540.82984	1079.64513	2.013	0.0010887	0.75549	0.00040859	2.7684	0.0014973	540.8302826822948	124.41	3.5435	123.37	123.03	126.57	-1.0377					194	67	5	0	0	0	0.52321	8	9695	9652;9658;9671;9683;9695;9719;9731;9737		51.335	20.292	1	8697600			22033	8124	18022	18045	24458;24459;24460;24461;24462;24463;24464;24465	24462					0.10849113496919927
KDATILPSTF	10	Unmodified	_KDATILPSTF_					0	0	0		tr|A0A7D6ZI58|A0A7D6ZI58_9CLOTCarbohydrateABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02955PE=3SV=1	tr|A0A7D6ZI58|A0A7D6ZI58_9CLOTCarbohydrateABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02955PE=3SV=1	tr|A0A7D6ZI58|A0A7D6ZI58_9CLOTCarbohydrateABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02955PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.2860717773438	2	546.800414	1091.58628	0.81	0.00044291	2.7484	0.0015028	3.5584	0.0019457	546.8008056159252	153.75	0.38239	153.75	153.45	153.83	0					10	7	2	0	0	0	0.026867	1	18019	18019		28.081	3.5623	1	35249			22034	35604	18023	18046	24466	24466					0.044145924118765834
KDAVIEFLLDK	11	Unmodified	_KDAVIEFLLDK_					0	0	0		ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	ENSG00000022277|ENST00000357348|RTF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	429.92584228515625	3	430.914978	1289.7231	-0.18302	-7.8867E-05	-0.789	-0.00033999	-0.97202	-0.00041886	430.91402625474547	47.985	0.91331	47.985	47.379	48.292	0					36	20	3	0	0	0	0.025943	1	3456	3456		23.514	12.952	1	481300			22035	1030	18024	18047	24467	24467					0.08983081571614093
KDAVVVMGPI	10	Unmodified	_KDAVVVMGPI_					0	0	0			REV__PLBD2|p.D510Afs*24|1|0.06|ENSG00000151176|chr12:113387833-113387833|A/-|frameshift_variant	REV__PLBD2|p.D510Afs*24|1|0.06|ENSG00000151176|chr12:113387833-113387833|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	514.7976684570312	2	514.794078	1027.5736	-0.73251	-0.00037709	4.212	0.0021683	3.4795	0.0017912	514.7962220184838	49.336	1.2139	49.336	49.031	50.245	0					70	27	5	0	0	0	0.3094	1	3694	3694		79.713	10.866	1	11686000	+		22036	20221	18025	18048	24468	24468					0.060918577480151725
KDAYPGSY	8	Unmodified	_KDAYPGSY_					0	0	0		ENSG00000108830|ENST00000587250|RND2;ENST00000587117.1_1_17:41177364-41178135:+|nuORF	ENSG00000108830|ENST00000587250|RND2	ENSG00000108830|ENST00000587250|RND2	MULTI-MSMS	OvCa99_classI_Rep5	1	450.7074890136719	2	450.708525	899.402498	0.27531	0.00012408	-3.169	-0.0014283	-2.8937	-0.0013042	450.7069286011585	30.568	0.49711	30.568	30.383	30.881	0					21	9	3	0	0	0	0.72896	1	1188	1188		37.159	0	1	127320			22037	2680	18026	18049	24469	24469					-0.051227562989538455
KDAYRMTI	8	Unmodified	_KDAYRMTI_					0	0	0			REV__nc|ENSG00000092529|P20807-2|CAPN3	REV__nc|ENSG00000092529|P20807-2|CAPN3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.94427490234375	2	499.260402	996.506251	-1.0756	-0.00053702	-2.202	-0.0010994	-3.2776	-0.0016364	499.2591743443909	81.895	0.91736	79.212	78.963	79.881	-2.6829					32	18	3	0	0	0	0.028476	1	6740	6740		27.882	0	1	90614	+		22038	17270	18027	18050	24470	24470					0.00785827537060868
KDCPRNLI	8	Unmodified	_KDCPRNLI_					0	0	0		ENSG00000182150|ENST00000653738|ERCC6L2;nc|ENSG00000182150|Q5T890-2|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	MULTI-MSMS	OvCa99_classI_Rep5	1	479.76214599609375	2	479.760569	957.506586	1.6166	0.00077558	1.9037	0.0009133	3.5203	0.0016889	479.76098086651103	118.91	0.66084	118.91	118.67	119.33	0					20	13	2	0	0	0	0.66128	1	13640	13640		51.193	1.7511	1	138460			22039	7971	18028	18051	24471	24471					0.02613247256908835
KDCPRNLI	8	Unmodified	_KDCPRNLI_					0	0	0		ENSG00000182150|ENST00000653738|ERCC6L2;nc|ENSG00000182150|Q5T890-2|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	479.760569	957.506586	-1.841	-0.00088324	8.099	0.0038856	6.258	0.0030024	479.7643766173668	119.14	0.69018	118.97	118.62	119.31	-0.16353	0.15477	0.00073551	NaN	51.193	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14298			22040	7971	18028	18051							0.02613247256908835
KDCPRNLI	8	Unmodified	_KDCPRNLI_					0	0	0		ENSG00000182150|ENST00000653738|ERCC6L2;nc|ENSG00000182150|Q5T890-2|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	479.760569	957.506586	1.0677	0.00051222	5.6744	0.0027224	6.7421	0.0032346	479.76302418767267	119.73	0.54161	118.7	118.53	119.07	-1.0271	-0.11794	-0.001591	NaN	51.193	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25827			22041	7971	18028	18051							0.02613247256908835
KDCPRNLI	8	Unmodified	_KDCPRNLI_					0	0	0		ENSG00000182150|ENST00000653738|ERCC6L2;nc|ENSG00000182150|Q5T890-2|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	479.760569	957.506586	-1.1787	-0.00056551	7.9539	0.003816	6.7751	0.0032504	479.76435221235784	120.04	0.57685	118.69	118.4	118.98	-1.3444	-0.12539	0.00059623	NaN	51.193	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34045			22042	7971	18028	18051							0.02613247256908835
KDDFPWLPV	9	Unmodified	_KDDFPWLPV_					0	0	0		tr|A0A553SML1|A0A553SML1_NIACICatalaseOS=NialliacirculansOX=1397GN=CEQ21_22670PE=3SV=1	tr|A0A553SML1|A0A553SML1_NIACICatalaseOS=NialliacirculansOX=1397GN=CEQ21_22670PE=3SV=1	tr|A0A553SML1|A0A553SML1_NIACICatalaseOS=NialliacirculansOX=1397GN=CEQ21_22670PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	558.7891235351562	2	558.78985	1115.56515	1.0194	0.00056962	-0.90589	-0.0005062	0.11349	6.342E-05	558.7890736933357	126.17	1.36	125.1	124.76	126.12	-1.0715					58	25	4	0	0	0	0.56889	1	9871	9871		35.618	1.4457	1	130080			22043	33845	18029	18052	24472	24472					0.011986271030309581
KDDIIEKVV	9	Unmodified	_KDDIIEKVV_					0	0	0			REV__nc|ENSG00000145703|Q13576-3|IQGAP2;REV__ENST00000512383.1_1_5:75964652-75969784:+|nuORF	REV__nc|ENSG00000145703|Q13576-3|IQGAP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.2939453125	2	529.808239	1057.60193	-1.5122	-0.00080115	4.3876	0.0023246	2.8754	0.0015234	529.8083898870574	73.81	0.70983	70.414	70.172	70.882	-3.3961					26	14	2	0	0	0	0.027447	1	5715	5715		47.657	6.8792	1	49305	+		22044	19977;26969	18030	18053	24473	24473					0.0754287892893899
KDDKIFYQ	8	Unmodified	_KDDKIFYQ_					0	0	0			REV__tr|A0A7D6ZYC9|A0A7D6ZYC9_9CLOTCarbon-nitrogenhydrolasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15975PE=4SV=1	REV__tr|A0A7D6ZYC9|A0A7D6ZYC9_9CLOTCarbon-nitrogenhydrolasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15975PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.2919311523438	2	528.771657	1055.52876	3.2865	0.0017378	-2.4461	-0.0012934	0.84037	0.00044436	529.2721210852742	97.75	0.21205	97.75	97.611	97.823	0					5	4	2	0	0	0	0.028476	1	10746	10746		24.203	0	1	151900	+		22045	32365	18031	18054	24474	24474					0.00321750206330762
KDDKYKKL	8	Unmodified	_KDDKYKKL_					0	0	0			REV__tr|A0A7D6VQG5|A0A7D6VQG5_9CLOTXanthinedehydrogenasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02095PE=4SV=1	REV__tr|A0A7D6VQG5|A0A7D6VQG5_9CLOTXanthinedehydrogenasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02095PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.7919921875	2	519.303124	1036.5917	0.62028	0.00032211	-1.7083	-0.0008871	-1.088	-0.00056499	519.3021010574682	86.772	0.97819	85.341	84.962	85.94	-1.4311					34	18	2	0	0	0	0.028476	1	7507	7507		53.351	7.3792	1	47393	+		22046	31323	18032	18055	24475	24475					0.07486315994378856
KDDRKREYT	9	Unmodified	_KDDRKREYT_					0	0	0			REV__nc|ENSG00000198000|Q76FK4-2|NOL8	REV__nc|ENSG00000198000|Q76FK4-2|NOL8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	606.3588256835938	2	605.812376	1209.6102	0.20484	0.0001241	-1.8831	-0.0011408	-1.6783	-0.0010167	606.31332600794	104.84	2.6596	102.72	102.38	105.04	-2.1192					70	51	2	0	0	0	0.027462	1	9552	9552		29.17	13.528	1	30100	+		22047	22978	18033	18056	24476	24476					0.013778258982711122
KDDRKREYT	9	Unmodified	_KDDRKREYT_					0	0	0			REV__nc|ENSG00000198000|Q76FK4-2|NOL8	REV__nc|ENSG00000198000|Q76FK4-2|NOL8	MULTI-MATCH	OvCa9_classI_Rep3	3		2	605.812376	1209.6102	2.1066	0.0012762	-3.9952	-0.0024204	-1.8887	-0.0011442	606.3118575698346	104.47	2.3947	103.04	102.34	104.74	-1.4347	0.16127	-0.0010732	NaN	29.17	61	45	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24240	+		22048	22978	18033	18056							0.013778258982711122
KDDSFLGKL	9	Unmodified	_KDDSFLGKL_					0	0	0		ENSG00000197702|ENST00000334956|PARVA;nc|ENSG00000197702|Q9NVD7-2|PARVA;ENST00000530755.5_1_11:12399134-12499642:+|nuORF	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	MULTI-MSMS	OvCa99_classI_Rep5	1	511.7789001464844	2	511.779482	1021.54441	-0.15205	-7.7816E-05	-0.52922	-0.00027085	-0.68127	-0.00034866	511.77915825625143	58.634	0.99127	58.634	58.237	59.228	0					52	24	3	0	0	0	0.2784	1	5021	5021		65.465	1.9315	1	34880000			22049	8737	18034	18057	24477	24477					0.034500367233818
KDDVPFLLV	9	Unmodified	_KDDVPFLLV_					0	0	0			REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.2792358398438	2	523.30005	1044.58555	-0.32706	-0.00017115	3.5766	0.0018716	3.2495	0.0017005	523.3027089457073	75.516	0.30995	73.662	73.429	73.739	-1.854					9	5	2	0	0	0	0.027461	1	6202	6202		32.812	4.9302	1	6414.2	+		22050	19033	18035	18058	24478	24478					0.06503797762843533
KDEALQEER	9	Unmodified	_KDEALQEER_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1;GOLGB1|p.R1008Efs*9|1|0.15|ENSG00000173230|chr3:121697486-121697486|T/-|frameshift_variant;ENST00000472829.1_1_3:121448028-121448843:-|nuORF	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.3204956054688	2	559.277835	1116.54112	0.1559	8.7189E-05	-1.3036	-0.00072907	-1.1477	-0.00064188	559.2769188166038	48.954	0.31281	48.954	48.718	49.031	0					14	6	3	0	0	0	0.027462	1	3618	3618		45.972	0	1	245920			22051	7361	18036	18059	24479	24479					-0.012492581212882214
KDEEDSFFWD	10	Unmodified	_KDEEDSFFWD_					0	0	0			REV__nc|ENSG00000275832|Q9P227-2|ARHGAP23	REV__nc|ENSG00000275832|Q9P227-2|ARHGAP23	MULTI-MSMS	OvCa9_classI_Rep2	2	439.84881591796875	3	439.847181	1316.51971	2.0479	0.00090077	1.1448	0.00050354	3.1927	0.0014043	439.84758405452044	42.08	0.98677	39.371	39.127	40.114	-2.7097					43	19	3	0	0	0	0.7855	1	2245	2245		20.837	1.5745	1	122460	+		22052	23627	18037	18060	24480	24480					-0.12588687940660748
KDEEDSFFWD	10	Unmodified	_KDEEDSFFWD_					0	0	0			REV__nc|ENSG00000275832|Q9P227-2|ARHGAP23	REV__nc|ENSG00000275832|Q9P227-2|ARHGAP23	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		3	439.847181	1316.51971	2.0479	0.00090077	1.1448	0.00050354	3.1927	0.0014043	439.84758405452044	42.08	0.98677	39.371	39.127	40.114	-2.7097	0.14222	-0.0018327	NaN	20.837	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122460	+		22053	23627	18037	18060							-0.12588687940660748
KDEEDSFFWD	10	Unmodified	_KDEEDSFFWD_					0	0	0			REV__nc|ENSG00000275832|Q9P227-2|ARHGAP23	REV__nc|ENSG00000275832|Q9P227-2|ARHGAP23	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	439.847181	1316.51971	-1.0048	-0.00044197	3.936	0.0017312	2.9312	0.0012893	439.84881444436337	42.067	1.4464	39.086	38.801	40.247	-2.9804	-0.14222	0.0018504	NaN	20.837	68	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	324010	+		22054	23627	18037	18060							-0.12588687940660748
KDEGIVKIYI	10	Unmodified	_KDEGIVKIYI_					0	0	0		tr|A0A553SMA6|A0A553SMA6_NIACISugar-bindingtranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22130PE=3SV=1	tr|A0A553SMA6|A0A553SMA6_NIACISugar-bindingtranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22130PE=3SV=1	tr|A0A553SMA6|A0A553SMA6_NIACISugar-bindingtranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22130PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3423461914062	2	589.344989	1176.67542	-4.3129	-0.0025418	0.73104	0.00043083	-3.5818	-0.0021109	589.3453728975387	144.79	3.9151	143.81	141.71	145.63	-0.97299					242	78	5	0	0	0	0.73378	1	12183	12183		26.693	2.1737	1	192050			22055	33815	18038	18061	24481	24481					0.09415427371436635
KDEHVALN	8	Unmodified	_KDEHVALN_					0	0	0			REV__ENSG00000168280|ENST00000435030|KIF5C	REV__ENSG00000168280|ENST00000435030|KIF5C	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.7883605957031	2	463.240524	924.466495	-1.253	-0.00058046	1.425	0.00066011	0.17194	7.965E-05	463.2409291803097	53.42	1.1206	50.212	49.795	50.915	-3.208					34	21	3	0	0	0	0.028476	1	3219	3219		27.882	0	1	74873	+		22056	21358	18039	18062	24482	24482					0.0012402385798395699
KDEKFNQLAG	10	Unmodified	_KDEKFNQLAG_					0	0	0			REV__ENSG00000197724|ENST00000359246|PHF2	REV__ENSG00000197724|ENST00000359246|PHF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.8139038085938	2	575.29857	1148.58259	-0.82438	-0.00047427	0.54353	0.00031269	-0.28085	-0.00016157	575.2987535615612	43.41	0.46698	43.41	43.27	43.737	0					13	10	2	0	0	0	0.026867	1	2863	2863		42.864	14.982	1	78485	+		22057	22946	18040	18063	24483	24483					0.014239226380595937
KDEKPYLMN	9	Unmodified	_KDEKPYLMN_					0	0	0			REV__ENST00000586439.1_1_19:36604659-36605969:-|nuORF	REV__ENST00000586439.1_1_19:36604659-36605969:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.2937622070312	2	569.284074	1136.5536	0.78468	0.0004467	-2.735	-0.001557	-1.9503	-0.0011103	569.2825594357715	151.78	0.56535	151.78	151.5	152.07	0					17	11	2	0	0	0	0.027462	1	17785	17785		29.17	2.4771	1	110630	+		22058	27864	18041	18064	24484	24484					-0.009219379826163276
KDELFNLPR	9	Unmodified	_KDELFNLPR_					0	0	0		ENST00000592201.1_1_18:55335885-55336077:+|nuORF	ENST00000592201.1_1_18:55335885-55336077:+|nuORF	ENST00000592201.1_1_18:55335885-55336077:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.3250122070312	2	566.31148	1130.60841	0.2363	0.00013382	3.7467	0.0021218	3.983	0.0022556	566.3136919169607	33.014	0.68864	33.014	32.844	33.533	0					29	13	3	0	0	0	0.027459	1	1464	1464		22.58	0	1	618570			22059	14131	18042	18065	24485	24485					0.04832816880320934
KDELKRKKA	9	Unmodified	_KDELKRKKA_					0	0	0			REV__MYH2|p.E952K|1|0.07|ENSG00000125414|chr17:10529918-10529918|C/T|missense_variant	REV__MYH2|p.E952K|1|0.07|ENSG00000125414|chr17:10529918-10529918|C/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.3257446289062	2	558.348397	1114.68224	0.048952	2.7332E-05	0.85024	0.00047473	0.89919	0.00050206	558.3489342624758	58.873	0.12003	58.873	58.812	58.932	0					4	2	2	0	0	0	0.027462	1	5032	5032		14.865	0	1	178970	+		22060	28688	18043	18066	24486	24486					0.12948785042658528
KDELLPLV	8	Unmodified	_KDELLPLV_					0	0	0			REV__ENSG00000103254|ENST00000569529|ANTKMT	REV__ENSG00000103254|ENST00000569529|ANTKMT	MULTI-MSMS	OvCa99_classI_Rep5	1	463.7823486328125	2	463.781493	925.548434	1.015	0.00047074	2.5815	0.0011972	3.5965	0.001668	463.7826198804977	139.58	0.33856	139.58	139.37	139.7	0					10	6	2	0	0	0	0.72896	1	16289	16289		37.159	0	1	26320	+		22061	17609	18044	18067	24487	24487					0.08268126217092231
KDENRKVVPV	10	Unmodified	_KDENRKVVPV_					0	0	0			REV__tr|A0A553SJ87|A0A553SJ87_NIACISugarABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16375PE=4SV=1	REV__tr|A0A553SJ87|A0A553SJ87_NIACISugarABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16375PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	592.3046875	2	592.343312	1182.67207	1.6366	0.00096946	3.0159	0.0017864	4.6526	0.0027559	592.3450767543019	93.632	0.53938	93.632	93.468	94.007	0					18	12	2	0	0	0	0.027056	1	10217	10217		20.947	8.1352	1	501540	+		22062	29978	18045	18068	24488	24488					0.08804177317415451
KDENSSKSTF	10	Unmodified	_KDENSSKSTF_					0	0	0		nc|ENSG00000124789|P49790-2|NUP153;ENSG00000124789|ENST00000262077|NUP153;nc|ENSG00000124789|P49790-3|NUP153	nc|ENSG00000124789|P49790-2|NUP153	nc|ENSG00000124789|P49790-2|NUP153	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.7982177734375	2	571.769842	1141.52513	-1.2312	-0.00070394	-4.0151	-0.0022957	-5.2462	-0.0029996	571.7670869108169	34.515	0.65683	34.515	34.161	34.818	0					20	13	2	0	0	0	0.026714	1	1630	1630		51.193	13.381	1	79739			22063	3681	18046	18069	24489	24489					-0.039969643581798664
KDEPLNKNI	9	Unmodified	_KDEPLNKNI_					0	0	0		tr|A0A7D6VMP7|A0A7D6VMP7_9CLOTPAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16200PE=4SV=1	tr|A0A7D6VMP7|A0A7D6VMP7_9CLOTPAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16200PE=4SV=1	tr|A0A7D6VMP7|A0A7D6VMP7_9CLOTPAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16200PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3505859375	2	535.795663	1069.57677	1.416	0.00075868	4.3917	0.0023531	5.8077	0.0031117	535.7976882488193	147.26	0.53949	147.26	147.01	147.55	0					28	10	4	0	0	0	0.027462	1	17254	17254		18.262	0	1	147800			22064	34666	18047	18070	24490	24490					0.044768241263682285
KDERRHSRKKR	11	Unmodified	_KDERRHSRKKR_					0	0	0		nc|ENSG00000173157|P59510-2|ADAMTS20;nc|ENSG00000173157|P59510|ADAMTS20;ENSG00000173157|ENST00000389420|ADAMTS20	nc|ENSG00000173157|P59510-2|ADAMTS20	nc|ENSG00000173157|P59510-2|ADAMTS20	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.9449157714844	3	499.294068	1494.86037	1.622	0.00080987	-4.3597	-0.0021768	-2.7377	-0.0013669	499.2911277694178	78.812	0.28652	78.812	78.668	78.955	0					9	6	2	0	0	0	0.026383	1	8008	8008		8.7993	0.39205	1	371630			22065	7353	18048	18071	24491	24491					0.13273848014387113
KDESKHGL	8	Unmodified	_KDESKHGL_					0	0	0			REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1	REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.7677917480469	2	457.240524	912.466495	0.23801	0.00010883	-0.5713	-0.00026122	-0.33329	-0.00015239	457.24004303769016	61.6	0.75434	58.142	57.816	58.57	-3.4577					25	15	3	0	0	0	0.028476	1	4217	4217		26.693	0	1	75457	+		22066	17129	18049	18072	24492	24492					0.0067602385800000775
KDESNSYQ	8	Unmodified	_KDESNSYQ_					0	0	0			REV__nc|ENSG00000169398|Q05397-7|PTK2	REV__nc|ENSG00000169398|Q05397-7|PTK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.2590637207031	2	485.709254	969.403954	-0.84371	-0.0004098	0.83814	0.00040709	-0.0055641	-2.7025E-06	485.7097930474574	41.998	0.38989	41.998	41.766	42.156	0					14	8	2	0	0	0	0.028476	1	2665	2665		60.972	11.53	1	44595	+		22067	21460	18050	18073	24493	24493					-0.08197167000855643
KDEVKIEL	8	Unmodified	_KDEVKIEL_					0	0	0		tr|A0A7D6VT02|A0A7D6VT02_9CLOTVOCfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11275PE=4SV=1	tr|A0A7D6VT02|A0A7D6VT02_9CLOTVOCfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11275PE=4SV=1	tr|A0A7D6VT02|A0A7D6VT02_9CLOTVOCfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11275PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	487.2807922363281	2	487.281857	972.549162	0.41655	0.00020298	-1.4122	-0.00068813	-0.99564	-0.00048516	487.28120490509764	96.794	4.5464	95.835	95.182	99.728	-0.95857					234	91	6	0	0	0	0.38806	1	8800	8800		90.37	0	1	7137300			22068	35073	18051	18074	24494	24494					0.061789208661252815
KDEVKIEL	8	Unmodified	_KDEVKIEL_					0	0	0		tr|A0A7D6VT02|A0A7D6VT02_9CLOTVOCfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11275PE=4SV=1	tr|A0A7D6VT02|A0A7D6VT02_9CLOTVOCfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11275PE=4SV=1	tr|A0A7D6VT02|A0A7D6VT02_9CLOTVOCfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11275PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.2825622558594	2	487.281857	972.549162	0.31716	0.00015454	-1.3078	-0.00063728	-0.99067	-0.00048274	487.2812648001119	98.127	3.3235	95.748	95.216	98.54	-2.3786					197	64	5	0	0	0	0.28381	1	8768	8768		110.12	0	1	10553000			22069	35073	18051	18074	24495	24495					0.061789208661252815
KDEVTLNVI	9	Unmodified	_KDEVTLNVI_					0	0	0			REV__nc|ENSG00000140945|P55290-5|CDH13	REV__nc|ENSG00000140945|P55290-5|CDH13	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7936401367188	2	515.792589	1029.57063	-0.90446	-0.00046651	-4.0761	-0.0021024	-4.9806	-0.002569	515.7927149545123	93.41	2.0609	90.902	90.01	92.071	-2.5072					115	42	4	0	0	0	0.046778	1	8122	8122		120.87	5.3744	1	273020	+		22070	19707	18052	18075	24496	24496					0.057023058948516336
KDEVTLNVI	9	Unmodified	_KDEVTLNVI_					0	0	0			REV__nc|ENSG00000140945|P55290-5|CDH13	REV__nc|ENSG00000140945|P55290-5|CDH13	MULTI-MATCH	OvCa99_classI_Rep5	1		2	515.792589	1029.57063	0.86736	0.00044738	2.9582	0.0015258	3.8256	0.0019732	515.7936604294348	90.927	0.67849	90.927	90.577	91.255	0	0.012347	0.0031182	NaN	120.87	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	437470	+		22071	19707	18052	18075							0.057023058948516336
KDFCKVLFL	9	Carbamidomethyl (C)	_KDFC(Carbamidomethyl (C))KVLFL_	KDFC(1)KVLFL		KDFC(70)KVLFL		0	1	0			REV__ENST00000534562.1_1_11:9749605-9771962:+|nuORF	REV__ENST00000534562.1_1_11:9749605-9771962:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	585.3262939453125	2	585.323002	1168.63145	1.8395	0.0010767	3.5298	0.0020661	5.3693	0.0031428	585.3247131399579	96.715	0.76577	96.715	96.501	97.267	0					52	17	4	0	0	0	0.2422	1	10596	10596		69.628	10.846	1	4185900	+		22072	19157	18053	18076	24497	24497	211				0.05388119673443725
KDFNDINDF	9	Unmodified	_KDFNDINDF_					0	0	0			REV__tr|A0A7D6VU81|A0A7D6VU81_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00965PE=4SV=1	REV__tr|A0A7D6VU81|A0A7D6VU81_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00965PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	564.8092651367188	2	564.253828	1126.4931	-0.88963	-0.00050198	4.4394	0.0025049	3.5497	0.002003	564.7580631092525	95.51	0.39949	93.614	93.414	93.813	-1.8956					10	7	2	0	0	0	0.027462	1	6211	6211		34.173	0	1	16437	+		22073	31659	18054	18077	24498	24498					-0.06508332041335052
KDFQRRNVS	9	Unmodified	_KDFQRRNVS_					0	0	0		ENST00000350896.3_1_8:16035456-16050289:-|nuORF	ENST00000350896.3_1_8:16035456-16050289:-|nuORF	ENST00000350896.3_1_8:16035456-16050289:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	575.8497924804688	2	575.309803	1148.60505	0.91806	0.00052817	0.33969	0.00019543	1.2577	0.0007236	575.3099475692635	88.196	0.83379	86.828	86.446	87.28	-1.3676					26	16	2	0	0	0	0.027462	1	7751	7751		20.947	6.0821	1	24810			22074	10652	18055	18078	24499	24499					0.036695668263291736
KDFTKLSS	8	Unmodified	_KDFTKLSS_					0	0	0		tr|A0A7D6ZWQ1|A0A7D6ZWQ1_9CLOTSolute-bindingproteinfamily5domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19970PE=3SV=1	tr|A0A7D6ZWQ1|A0A7D6ZWQ1_9CLOTSolute-bindingproteinfamily5domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19970PE=3SV=1	tr|A0A7D6ZWQ1|A0A7D6ZWQ1_9CLOTSolute-bindingproteinfamily5domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19970PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.2117614746094	2	463.2531	924.491647	-0.62437	-0.00028924	1.0367	0.00048025	0.41232	0.00019101	463.253720065161	35.124	0.4741	35.124	34.772	35.246	0					12	9	2	0	0	0	0.028476	1	1730	1730		31.955	7.7521	1	83219			22075	35850	18056	18079	24500	24500					0.026380786605727735
KDFYSRIYEEK	11	Unmodified	_KDFYSRIYEEK_					0	0	0		tr|A0A7D7A0I1|A0A7D7A0I1_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10050PE=4SV=1	tr|A0A7D7A0I1|A0A7D7A0I1_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10050PE=4SV=1	tr|A0A7D7A0I1|A0A7D7A0I1_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10050PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.7867431640625	3	493.248908	1476.72489	2.0836	0.0010277	-1.909	-0.00094164	0.17457	8.6108E-05	493.2478291357572	74.975	0.61617	74.975	74.676	75.292	0					24	14	3	0	0	0	0.026079	1	7453	7453		14.086	2.6314	1	306350			22076	35996	18057	18080	24501	24501					0.005600905895789765
KDGANKLPLCV	11	Unmodified	_KDGANKLPLCV_					0	0	0			REV__ENSG00000100393|ENST00000263253|EP300	REV__ENSG00000100393|ENST00000263253|EP300	MULTI-SECPEP	OvCa9_classI_Rep4_	4	578.8565673828125	2	579.320991	1156.62743	-0.63587	-0.00036838	-0.725	-0.00042001	-1.3609	-0.00078838	579.8214975559366	75.028	0.52836	71.797	71.629	72.157	-3.2308					13	10	2	0	0	0	0.025239	1	5906	5906		32.812	10.233	1	25472	+		22077	17411	18058	18081	24502	24502					0.05538030179741327
KDGDTNSHR	9	Unmodified	_KDGDTNSHR_					0	0	0		tr|A0A7D7A2Q6|A0A7D7A2Q6_9CLOTZ1domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09480PE=4SV=1	tr|A0A7D7A2Q6|A0A7D7A2Q6_9CLOTZ1domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09480PE=4SV=1	tr|A0A7D7A2Q6|A0A7D7A2Q6_9CLOTZ1domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09480PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7791748046875	2	515.239044	1028.46353	-0.88511	-0.00045605	4.2721	0.0022011	3.3869	0.0017451	515.24124110059	42.24	0.64058	42.24	42.024	42.665	0					24	14	3	0	0	0	0.027453	1	2687	2687		37.812	9.9293	1	183000			22078	36088	18059	18082	24503	24503					-0.04955851266799982
KDGENKLDTLI	11	Unmodified	_KDGENKLDTLI_					0	0	0		ENSG00000106524|ENST00000306999|ANKMY2	ENSG00000106524|ENST00000306999|ANKMY2	ENSG00000106524|ENST00000306999|ANKMY2	MULTI-SECPEP	OvCa99_classI_Rep5	1	622.8667602539062	2	623.337892	1244.66123	0.03722	2.32E-05	3.8559	0.0024035	3.8931	0.0024267	623.3403248012836	57.855	0.4624	57.855	57.691	58.153	0					15	10	2	0	0	0	0.025362	1	4878	4878		40.058	0.80534	1	223000			22079	2560	18060	18083	24504	24504					0.04868730152475109
KDGEPNITR	9	Unmodified	_KDGEPNITR_					0	0	0			REV__nc|ENSG00000059145|Q9H9P5-6|UNKL	REV__nc|ENSG00000059145|Q9H9P5-6|UNKL	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2402954101562	2	515.269813	1028.52507	-0.82792	-0.0004266	1.6488	0.00084956	0.82086	0.00042296	515.2701271836686	36.187	0.54871	36.187	35.939	36.487	0					19	11	3	0	0	0	0.027462	1	1921	1921		35.618	0	1	359730	+		22080	28717	18061	18084	24505	24505					0.011950804324442288
KDGIKIPKS	9	Unmodified	_KDGIKIPKS_					0	0	0			REV__tr|A0A7D7A2U2|A0A7D7A2U2_9CLOTAcyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18845PE=4SV=1	REV__tr|A0A7D7A2U2|A0A7D7A2U2_9CLOTAcyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18845PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.7975158691406	2	493.305667	984.596781	-0.25263	-0.00012462	0.45882	0.00022634	0.20619	0.00010171	493.30564823905235	51.28	0.50855	51.28	51.036	51.544	0					19	11	2	0	0	0	0.027462	1	3947	3947		18.262	0	1	393690	+		22081	32551	18062	18085	24506	24506					0.10386619856990364
KDGLLHVPL	9	Unmodified	_KDGLLHVPL_					0	0	0			REV__ENST00000290317.9_1_20:45242167-45298745:-|nuORF	REV__ENST00000290317.9_1_20:45242167-45298745:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.3034973144531	2	496.300384	990.586216	3.3475	0.0016613	3.6328	0.001803	6.9803	0.0034643	496.30213048419296	132.62	4.7473	131.12	130.38	135.12	-1.5014					178	95	2	0	0	0	0.62352	1	12752	12752		29.15	1.2673	1	64200	+		22082	24151	18063	18086	24507	24507					0.0905463720255284
KDGLLHVPL	9	Unmodified	_KDGLLHVPL_					0	0	0			REV__ENST00000290317.9_1_20:45242167-45298745:-|nuORF	REV__ENST00000290317.9_1_20:45242167-45298745:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	496.300384	990.586216	0.81447	0.00040422	6.3554	0.0031542	7.1699	0.0035584	496.3034328484854	131.27	1.6371	131.04	129.81	131.45	-0.22696	-0.037689	0.0019744	NaN	29.15	68	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62409	+		22083	24151	18063	18086							0.0905463720255284
KDGLTDLQEI	10	Unmodified	_KDGLTDLQEI_					0	0	0		tr|A0A553SQI7|A0A553SQI7_NIACIN-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07760PE=4SV=1	tr|A0A553SQI7|A0A553SQI7_NIACIN-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07760PE=4SV=1	tr|A0A553SQI7|A0A553SQI7_NIACIN-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07760PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	566.297607421875	2	566.298236	1130.58192	-0.94412	-0.00053466	-0.19184	-0.00010864	-1.136	-0.00064329	566.2979066209101	99.965	2.3305	99.134	98.418	100.75	-0.83051					77	46	4	0	0	0	0.41036	1	9127	9127		66.962	0	1	343040			22084	34165	18064	18087	24508	24508					0.021850831983329044
KDGLTDLQEI	10	Unmodified	_KDGLTDLQEI_					0	0	0		tr|A0A553SQI7|A0A553SQI7_NIACIN-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07760PE=4SV=1	tr|A0A553SQI7|A0A553SQI7_NIACIN-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07760PE=4SV=1	tr|A0A553SQI7|A0A553SQI7_NIACIN-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07760PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	566.2979736328125	2	566.298236	1130.58192	-0.91483	-0.00051807	-0.010056	-5.6947E-06	-0.92489	-0.00052376	566.2978698656331	100.56	0.98025	98.952	98.518	99.498	-1.6053					67	19	5	0	0	0	0.30325	1	6851	6851		80.455	7.5754	1	1325600			22085	34165	18064	18087	24509	24509					0.021850831983329044
KDGNWRPN	8	Unmodified	_KDGNWRPN_					0	0	0			REV__ENSG00000121053|ENST00000225371|EPX	REV__ENSG00000121053|ENST00000225371|EPX	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.79962158203125	2	493.743765	985.472977	-0.91876	-0.00045363	-0.62248	-0.00030734	-1.5412	-0.00076098	493.74343112870224	49.559	0.48325	49.559	49.373	49.856	0					15	10	2	0	0	0	0.028476	1	3704	3704		37.159	0	1	371350	+		22086	18526	18065	18088	24510	24510					-0.02034038190629417
KDGPKGIWLP	10	Unmodified	_KDGPKGIWLP_					0	0	0			REV__ENSG00000176476|ENST00000317058|SGF29	REV__ENSG00000176476|ENST00000317058|SGF29	MULTI-MSMS	OvCa9_classI_Rep2	2	555.8236083984375	2	555.818941	1109.62333	4.315	0.0023984	1.8397	0.0010225	6.1547	0.0034209	555.8198103416565	25.114	1.0176	22.405	22.261	23.279	-2.7097					54	22	4	0	0	0	0.5675	1	232	232		45.972	3.5761	1	302060	+		22087	21953	18066	18089	24511	24511					0.0729030874831551
KDGQLSKLR	9	Unmodified	_KDGQLSKLR_					0	0	0			REV__ENSG00000120708|ENST00000442011|TGFBI	REV__ENSG00000120708|ENST00000442011|TGFBI	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.7921142578125	2	522.811648	1043.60874	-0.76891	-0.00040199	0.59239	0.00030971	-0.17652	-9.2287E-05	522.8117539932874	40.671	0.6721	40.671	40.432	41.104	0					28	14	3	0	0	0	0.027462	1	2507	2507		14.137	0	1	473490	+		22088	18513	18067	18090	24512	24512					0.08868236600164892
KDGTPIFLSL	10	Unmodified	_KDGTPIFLSL_					0	0	0			REV__tr|A0A7D6VRL4|A0A7D6VRL4_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12645PE=4SV=1	REV__tr|A0A7D6VRL4|A0A7D6VRL4_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12645PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	545.8126831054688	2	545.810782	1089.60701	1.8667	0.0010189	0.52037	0.00028403	2.3871	0.0013029	545.8107175137653	136.52	0.56886	136.52	136.21	136.77	0					34	11	4	0	0	0	0.30325	1	15909	15909		80.455	12.961	1	241110	+		22089	31426	18068	18091	24513	24513					0.0657918279155183
KDGTPIFLSL	10	Unmodified	_KDGTPIFLSL_					0	0	0			REV__tr|A0A7D6VRL4|A0A7D6VRL4_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12645PE=4SV=1	REV__tr|A0A7D6VRL4|A0A7D6VRL4_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12645PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	545.810782	1089.60701	1.8667	0.0010189	0.52037	0.00028403	2.3871	0.0013029	545.8107175137653	136.52	0.56886	136.52	136.21	136.77	0	0	0	NaN	80.455	34	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	241110	+		22090	31426	18068	18091							0.0657918279155183
KDGVHFKI	8	Unmodified	_KDGVHFKI_					0	0	0		tr|A0A553SSU3|A0A553SSU3_NIACIGHKLdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03710PE=4SV=1	tr|A0A553SSU3|A0A553SSU3_NIACIGHKLdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03710PE=4SV=1	tr|A0A553SSU3|A0A553SSU3_NIACIGHKLdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03710PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.74810791015625	2	472.271627	942.528701	-0.33506	-0.00015824	-3.9553	-0.001868	-4.2904	-0.0020262	472.2697666912639	48.313	0.46893	48.313	48.116	48.585	0					16	10	2	0	0	0	0.028476	1	3536	3536		79.451	8.1553	1	490800			22091	34420	18069	18092	24514	24514					0.055137949969775946
KDGVKKGIL	9	Unmodified	_KDGVKKGIL_					0	0	0			REV__tr|A0A553SKH5|A0A553SKH5_NIACITranscriptionelongationfactorGreAOS=NialliacirculansOX=1397GN=greAPE=3SV=1	REV__tr|A0A553SKH5|A0A553SKH5_NIACITranscriptionelongationfactorGreAOS=NialliacirculansOX=1397GN=greAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.3029479980469	2	479.30821	956.601866	-0.89757	-0.00043021	0.80301	0.00038489	-0.094558	-4.5322E-05	479.30842886737076	27.603	0.40045	27.603	27.39	27.791	0					9	7	2	0	0	0	0.027462	1	811	811		45.952	5.3793	1	26257	+		22092	30127	18070	18093	24515	24515					0.12182923719615246
KDGVKWSH	8	Unmodified	_KDGVKWSH_					0	0	0			REV__ENST00000460483.5_1_10:112057460-112064550:-|nuORF	REV__ENST00000460483.5_1_10:112057460-112064550:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.79876708984375	2	478.751059	955.487565	-0.24953	-0.00011946	-4.1597	-0.0019915	-4.4092	-0.0021109	478.7490947570499	48.756	0.35546	48.756	48.63	48.986	0					16	7	3	0	0	0	0.028476	1	3613	3613		44.531	19.081	1	291600	+		22093	18477	18071	18094	24516	24516					0.008040339575131839
KDGYGRNYSE	10	Unmodified	_KDGYGRNYSE_					0	0	0		ENST00000447794.1_1_17:18554413-18554461:+|nuORF	ENST00000447794.1_1_17:18554413-18554461:+|nuORF	ENST00000447794.1_1_17:18554413-18554461:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	594.8479614257812	2	594.767634	1187.52072	-0.16573	-9.8571E-05	-0.22715	-0.0001351	-0.39288	-0.00023367	594.7672195770265	79.906	0.63857	77.155	76.986	77.624	-2.7514					18	12	2	0	0	0	0.026602	1	6524	6524		47.96	20.077	1	48611			22094	12012	18072	18095	24517	24517					-0.06554428781100796
KDGYVKKIN	9	Unmodified	_KDGYVKKIN_					0	0	0			REV__tr|A0A7D6VXP8|A0A7D6VXP8_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13640PE=3SV=1	REV__tr|A0A7D6VXP8|A0A7D6VXP8_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13640PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.8090209960938	2	532.808574	1063.60259	-1.1516	-0.00061358	0.62725	0.0003342	-0.52435	-0.00027938	532.8089107055455	77.667	2.0564	74.851	74.488	76.544	-2.8165					142	42	4	0	0	0	0.27001	1	6284	6284		66.429	0.6261	1	4693600	+		22095	31784	18073	18096	24518	24518					0.07333718368658992
KDHAPRLARLS	11	Unmodified	_KDHAPRLARLS_					0	0	0		nc|ENSG00000133059|Q6XUX3-2|DSTYK;ENSG00000133059|ENST00000367162|DSTYK;nc|ENSG00000133059|Q6XUX3-4|DSTYK	nc|ENSG00000133059|Q6XUX3-2|DSTYK	nc|ENSG00000133059|Q6XUX3-2|DSTYK	MULTI-MSMS	OvCa9_classI_Rep2	2	632.3623657226562	2	632.367653	1262.72075	-5.7389	-0.0036291	-4.1615	-0.0026316	-9.9003	-0.0062606	632.3648584403688	161.99	0.88445	161.76	161.38	162.26	-0.22696					39	16	3	0	0	0	0.72064	1	16490	16490		22.58	0	1	80508			22096	4194	18074	18097	24519	24519					0.09990090677183616
KDHLKRSL	8	Unmodified	_KDHLKRSL_					0	0	0		ENSG00000258484|ENST00000310673|SPESP1	ENSG00000258484|ENST00000310673|SPESP1	ENSG00000258484|ENST00000310673|SPESP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.25640869140625	2	498.801083	995.587613	-0.96636	-0.00048202	0.25389	0.00012664	-0.71246	-0.00035538	498.8015353717835	70.474	0.96656	66.993	66.589	67.555	-3.4812					24	19	2	0	0	0	0.028476	1	5301	5301		53.351	3.3269	1	44730			22097	9480	18075	18098	24520	24520					0.08964271291313253
KDHLLEESTF	10	Unmodified	_KDHLLEESTF_					0	0	0		ENSG00000139970|ENST00000267484|RTN1	ENSG00000139970|ENST00000267484|RTN1	ENSG00000139970|ENST00000267484|RTN1	MULTI-MSMS	OvCa99_classI_Rep5	1	407.2069091796875	3	406.871549	1217.59282	1.3624	0.00055431	1.3653	0.0005555	2.7277	0.0011098	406.8718583274895	20.934	0.23787	20.934	20.823	21.061	0					11	4	3	0	0	0	0.73063	1	73	73		27.047	0.98393	1	59373			22098	4813	18076	18099	24521	24521					-0.007275144273762635
KDHPRQGSI	9	Unmodified	_KDHPRQGSI_					0	0	0		nc|ENSG00000169297|P51843-2|NR0B1;ENSG00000169297|ENST00000378970|NR0B1	nc|ENSG00000169297|P51843-2|NR0B1	nc|ENSG00000169297|P51843-2|NR0B1	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.7940063476562	2	519.277972	1036.54139	1.84	0.00095545	-2.8824	-0.0014968	-1.0425	-0.00054133	519.2763012392546	102.86	0.46407	102.86	102.63	103.1	0					20	10	2	0	0	0	0.027448	1	11512	11512		27.882	0	1	867410			22099	6999	18077	18100	24522	24522					0.024582063892466977
KDHTLDSYI	9	Unmodified	_KDHTLDSYI_					0	0	0			REV__tr|A0A7D7A0D2|A0A7D7A0D2_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09475PE=4SV=1	REV__tr|A0A7D7A0D2|A0A7D7A0D2_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09475PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.257080078125	2	546.272021	1090.52949	1.2981	0.00070913	-1.384	-0.00075607	-0.085929	-4.6941E-05	546.270787705135	93.406	0.37457	93.406	93.093	93.468	0					9	8	2	0	0	0	0.027446	1	10104	10104		42.864	0	1	262460	+		22100	32444	18078	18101	24523	24523					-0.01215455144642874
KDIAILPLI	9	Unmodified	_KDIAILPLI_					0	0	0		tr|A0A553SGR2|A0A553SGR2_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11340PE=4SV=1	tr|A0A553SGR2|A0A553SGR2_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11340PE=4SV=1	tr|A0A553SGR2|A0A553SGR2_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11340PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3272399902344	2	498.328611	994.642668	0.043715	2.1784E-05	-0.27412	-0.0001366	-0.2304	-0.00011482	498.32825021721135	130.83	0.64011	129.71	129.46	130.1	-1.1249					20	12	2	0	0	0	0.50149	1	10400	10400		42.396	5.237	1	19445			22101	33184	18079	18102	24524	24524					0.14513265039238377
KDIAILPLI	9	Unmodified	_KDIAILPLI_					0	0	0		tr|A0A553SGR2|A0A553SGR2_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11340PE=4SV=1	tr|A0A553SGR2|A0A553SGR2_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11340PE=4SV=1	tr|A0A553SGR2|A0A553SGR2_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11340PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	498.328611	994.642668	1.5983	0.0007965	-0.14493	-7.2225E-05	1.4534	0.00072428	498.32842043861217	129.72	0.7016	129.72	129.35	130.06	0	0.082187	0.0014209	NaN	42.396	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46591			22102	33184	18079	18102							0.14513265039238377
KDIAILPLI	9	Unmodified	_KDIAILPLI_					0	0	0		tr|A0A553SGR2|A0A553SGR2_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11340PE=4SV=1	tr|A0A553SGR2|A0A553SGR2_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11340PE=4SV=1	tr|A0A553SGR2|A0A553SGR2_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11340PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	498.328611	994.642668	0.83012	0.00041367	-0.95562	-0.00047621	-0.12549	-6.2536E-05	498.32798862484134	129.72	0.69048	129.49	129.27	129.96	-0.22696	-0.14985	0.0006129	NaN	42.396	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37697			22103	33184	18079	18102							0.14513265039238377
KDIAILPLI	9	Unmodified	_KDIAILPLI_					0	0	0		tr|A0A553SGR2|A0A553SGR2_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11340PE=4SV=1	tr|A0A553SGR2|A0A553SGR2_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11340PE=4SV=1	tr|A0A553SGR2|A0A553SGR2_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11340PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	498.328611	994.642668	3.3335	0.0016612	-3.4651	-0.0017267	-0.13154	-6.5549E-05	498.32664392510895	131.12	0.74706	129.64	129.45	130.19	-1.4779	-0.00034866	-0.0018882	NaN	42.396	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25254			22104	33184	18079	18102							0.14513265039238377
KDIDVSTEYY	10	Unmodified	_KDIDVSTEYY_					0	0	0		tr|A0A7D6ZFA0|A0A7D6ZFA0_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16955PE=4SV=1	tr|A0A7D6ZFA0|A0A7D6ZFA0_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16955PE=4SV=1	tr|A0A7D6ZFA0|A0A7D6ZFA0_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16955PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	616.7900390625	2	616.787701	1231.56085	-0.64011	-0.00039481	4.2652	0.0026307	3.6251	0.0022359	616.790193753013	35.664	3.1445	35.664	35.475	38.619	0					161	68	3	0	0	0	0.61634	1	1817	1817		44.117	4.864	1	606460			22105	35504	18080	18103	24525	24525					-0.04566926901179613
KDIEEALCAC	10	Unmodified	_KDIEEALCAC_					0	0	0		tr|A0A7D6ZHD3|A0A7D6ZHD3_9CLOTPseudaminicacidsynthaseOS=ClostridiumintestinaleOX=36845GN=pseIPE=4SV=1	tr|A0A7D6ZHD3|A0A7D6ZHD3_9CLOTPseudaminicacidsynthaseOS=ClostridiumintestinaleOX=36845GN=pseIPE=4SV=1	tr|A0A7D6ZHD3|A0A7D6ZHD3_9CLOTPseudaminicacidsynthaseOS=ClostridiumintestinaleOX=36845GN=pseIPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.7734985351562	2	547.746467	1093.47838	-0.582	-0.00031879	2.6702	0.0014626	2.0882	0.0011438	548.2492683186925	48.433	0.2087	48.433	48.292	48.501	0					10	4	3	0	0	0	0.026849	1	3540	3540		13.454	0	1	236230			22106	35572	18081	18104	24526	24526					-0.0646186350534208
KDIENCFLS	9	Unmodified	_KDIENCFLS_					0	0	0			REV__HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|100|2|sense	REV__HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|100|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.3262939453125	2	534.755149	1067.49575	-0.37924	-0.0002028	-3.6714	-0.0019633	-4.0507	-0.0021661	534.7532700553828	42.663	0.90117	42.663	42.242	43.143	0					25	20	2	0	0	0	0.02744	1	2767	2767		62.107	0	1	86601	+		22107	28265	18082	18105	24527	24527					-0.03530199908027498
KDIFFQFII	9	Unmodified	_KDIFFQFII_					0	0	0		nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-11|TCF4	nc|ENSG00000196628|P15884-7|TCF4	nc|ENSG00000196628|P15884-7|TCF4	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.815185546875	2	585.831517	1169.64848	0.83295	0.00048797	1.0585	0.00062009	1.8914	0.0011081	586.3332040545088	132.62	0.66422	132.62	132.23	132.89	0					24	13	3	0	0	0	0.027232	1	15399	15399		66.429	0	1	90780			22108	15244	18083	18106	24528	24528					0.07044363550903654
KDIFLWKI	8	Unmodified	_KDIFLWKI_					0	0	0		tr|A0A7D6VSH3|A0A7D6VSH3_9CLOTDUF2812domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12760PE=4SV=1	tr|A0A7D6VSH3|A0A7D6VSH3_9CLOTDUF2812domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12760PE=4SV=1	tr|A0A7D6VSH3|A0A7D6VSH3_9CLOTDUF2812domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12760PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.30615234375	2	531.820953	1061.62735	3.612	0.0019209	-4.1652	-0.0022152	-0.55325	-0.00029423	531.8187519716307	97.577	0.29861	97.577	97.397	97.696	0					10	6	2	0	0	0	0.028476	1	10700	10700		56.721	0	1	154260			22109	35025	18084	18107	24529	24529					0.09900398242029951
KDIHVELIK	9	Unmodified	_KDIHVELIK_					0	0	0			REV__NFX1-DNAJA1|1|fusion	REV__NFX1-DNAJA1|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep3	3	547.7958374023438	2	547.832049	1093.64954	-0.22751	-0.00012464	-0.22803	-0.00012492	-0.45554	-0.00024956	547.831790338506	107.58	0.47044	106.31	106.05	106.52	-1.267					12	8	2	0	0	0	0.027432	1	7625	7625		77.318	3.0625	1	19700	+		22110	16316	18085	18108	24530	24530					0.1064657791978334
KDIIHMAENII	11	Unmodified	_KDIIHMAENII_					0	0	0			REV__tr|A0A7D6W3P5|A0A7D6W3P5_9CLOTPolyribonucleotidenucleotidyltransferaseOS=ClostridiumintestinaleOX=36845GN=pnpPE=3SV=1	REV__tr|A0A7D6W3P5|A0A7D6W3P5_9CLOTPolyribonucleotidenucleotidyltransferaseOS=ClostridiumintestinaleOX=36845GN=pnpPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	433.7781677246094	3	432.904196	1295.69076	-0.037383	-1.6183E-05	-0.40288	-0.00017441	-0.44027	-0.00019059	432.90402141173513	52.21	0.52684	52.21	51.995	52.522	0					21	11	3	0	0	0	0.025955	1	4115	4115		24.232	11.274	1	189490	+		22111	31920	18086	18109	24531	24531					0.054739708969918865
KDIILPFRVI	10	Unmodified	_KDIILPFRVI_					0	0	0		nc|ENSG00000161203|Q96CW1-2|AP2M1;ENSG00000161203|ENST00000292807|AP2M1;ENST00000480260.1_1_3:183899436-183900037:+|nuORF;ENST00000461733.5_1_3:183898306-183901401:+|nuORF	nc|ENSG00000161203|Q96CW1-2|AP2M1	nc|ENSG00000161203|Q96CW1-2|AP2M1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	406.2020263671875	3	405.26042	1212.75943	-0.47726	-0.00019342	-3.2903	-0.0013334	-3.7675	-0.0015268	405.2590664126287	49.263	1.3001	46.121	45.884	47.184	-3.1416					38	24	2	0	0	0	0.027115	1	2793	2793		18.531	0	1	83576			22112	6123	18087	18110	24532	24532					0.16156003258970486
KDIKGLSKK	9	Unmodified	_KDIKGLSKK_					0	0	0		ENST00000490747.1_1_7:92199124-92206443:-|nuORF;ENST00000481407.5_1_7:92191598-92207100:-|nuORF;nc|ENSG00000234545|Q5BKY9-2|FAM133B;ENSG00000234545|ENST00000445716|FAM133B	ENST00000490747.1_1_7:92199124-92206443:-|nuORF	ENST00000490747.1_1_7:92199124-92206443:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.8136291503906	2	508.826766	1015.63898	-0.73954	-0.0003763	0.94813	0.00048243	0.20858	0.00010613	508.8270110357855	74.875	0.19577	72.464	72.34	72.536	-2.4106					5	3	2	0	0	0	0.027425	1	3744	3744		60.118	0	1	44882			22113	9299	18088	18111	24533	24533					0.1317859526536722
KDIKTKRK	8	Unmodified	_KDIKTKRK_					0	0	0			REV__tr|A0A7D6ZIP8|A0A7D6ZIP8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07925PE=4SV=1;REV__tr|A0A7D6ZJ89|A0A7D6ZJ89_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10250PE=4SV=1	REV__tr|A0A7D6ZIP8|A0A7D6ZIP8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07925PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.8136291503906	2	508.832383	1015.65021	-0.77019	-0.0003919	-1.0857	-0.00055243	-1.8559	-0.00094433	508.8329600572754	75.161	1.2346	72.75	72.093	73.327	-2.4106					38	24	3	0	0	0	0.028476	1	3744	3744		56.721	0	1	176750	+		22114	32065;32082	18089	18112	24534	24534					0.1430141735950201
KDILLELREGR	11	Unmodified	_KDILLELREGR_					0	0	0			REV__nc|ENSG00000292366|P51809-3|VAMP7	REV__nc|ENSG00000292366|P51809-3|VAMP7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	448.7884216308594	3	447.933143	1340.7776	0.36534	0.00016365	-0.60603	-0.00027146	-0.24069	-0.00010781	447.9328585846656	47.391	0.35152	44.303	44.102	44.454	-3.0872					9	6	2	0	0	0	0.026132	1	2555	2555		7.3413	1.9284	1	7708.5	+		22115	18681	18090	18113	24535	24535					0.12084093443013444
KDILNENQL	9	Unmodified	_KDILNENQL_					0	0	0			REV__nc|ENSG00000148396|O15027-2|SEC16A	REV__nc|ENSG00000148396|O15027-2|SEC16A	MULTI-MSMS	OvCa9_classI_Rep3	3	543.7951049804688	2	543.793121	1085.57169	0.23161	0.00012595	2.9045	0.0015795	3.1361	0.0017054	543.7946646282795	107.74	3.3384	106.52	106.14	109.48	-1.2197					133	63	5	0	0	0	0.011767	2	7706	7706;7718		163.15	28.34	1	2113600	+		22116	20108	18091	18114	24536;24537	24536					0.032325202637593975
KDIMLQFLI	9	Unmodified	_KDIMLQFLI_					0	0	0		tr|A0A553SG62|A0A553SG62_NIACIFtsX-likepermeasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10280PE=3SV=1	tr|A0A553SG62|A0A553SG62_NIACIFtsX-likepermeasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10280PE=3SV=1	tr|A0A553SG62|A0A553SG62_NIACIFtsX-likepermeasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10280PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	560.8269653320312	2	560.825378	1119.6362	2.637	0.0014789	-0.85739	-0.00048085	1.7796	0.00099807	560.8244959106977	101.17	0.79633	101.17	100.77	101.57	0					46	18	3	0	0	0	0.043101	1	11258	11258		124.08	20.067	1	2691800			22117	33124	18092	18115	24538	24538					0.08117003816209944
KDIMRIKNAL	10	Unmodified	_KDIMRIKNAL_					0	0	0			REV__tr|A0A7D7A1H3|A0A7D7A1H3_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_04185PE=4SV=1	REV__tr|A0A7D7A1H3|A0A7D7A1H3_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_04185PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	601.3331909179688	2	601.357908	1200.70126	1.7225	0.0010359	-2.9382	-0.0017669	-1.2157	-0.00073104	601.3560302052173	91.265	1.2006	91.265	90.382	91.582	0					49	29	3	0	0	0	0.026635	1	9866	9866		47.657	0	1	1276100	+		22118	32491	18093	18116	24539	24539					0.1089399834206688
KDINQPRLPS	10	Unmodified	_KDINQPRLPS_					0	0	0		tr|A0A7D6ZP71|A0A7D6ZP71_9CLOTElectrontransferflavoproteinsmallsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_19090PE=4SV=1	tr|A0A7D6ZP71|A0A7D6ZP71_9CLOTElectrontransferflavoproteinsmallsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_19090PE=4SV=1	tr|A0A7D6ZP71|A0A7D6ZP71_9CLOTElectrontransferflavoproteinsmallsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_19090PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	584.329833984375	2	584.327662	1166.64077	0.38348	0.00022408	2.6813	0.0015667	3.0648	0.0017908	584.329140448532	112.15	2.0737	112.03	111.78	113.86	-0.12174					108	41	5	0	0	0	0.32926	1	10606	10606		77.318	13.11	1	555130			22119	35688	18094	18117	24540	24540					0.06411604283312045
KDIPKGSGNF	10	Unmodified	_KDIPKGSGNF_					0	0	0			REV__MPHOSPH10-ATP6V1B1|1|fusion	REV__MPHOSPH10-ATP6V1B1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	531.7819213867188	2	531.782556	1061.55056	-1.5399	-0.00081889	1.1515	0.00061235	-0.38839	-0.00020654	531.7830281716216	47.648	1.6888	44.939	44.39	46.079	-2.7097					102	33	5	0	0	0	0.36605	1	2944	2944		72.879	6.45	1	612800	+		22120	28676	18095	18118	24541	24541					0.022245549549097632
KDIPVKWII	9	Unmodified	_KDIPVKWII_					0	0	0		tr|A0A7D6ZPK5|A0A7D6ZPK5_9CLOTSulfiteexporterTauE/SafEfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20790PE=4SV=1	tr|A0A7D6ZPK5|A0A7D6ZPK5_9CLOTSulfiteexporterTauE/SafEfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20790PE=4SV=1	tr|A0A7D6ZPK5|A0A7D6ZPK5_9CLOTSulfiteexporterTauE/SafEfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20790PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	555.8223266601562	2	556.347335	1110.68012	4.3541	0.0024224	0.98131	0.00054595	5.3354	0.0029683	556.3482533910744	25.126	0.239	22.416	22.29	22.529	-2.7097					6	4	2	0	0	0	0.027462	1	219	219		29.15	1.2673	1	13091			22121	35691	18096	18119	24542	24542					0.12920356304834968
KDIQGSLQVV	10	Unmodified	_KDIQGSLQVV_					0	0	0		nc|ENSG00000140945|P55290-5|CDH13	nc|ENSG00000140945|P55290-5|CDH13	nc|ENSG00000140945|P55290-5|CDH13	MULTI-MSMS	OvCa99_classI_Rep5	1	543.8130493164062	2	543.811313	1085.60807	1.9933	0.001084	1.5784	0.00085838	3.5717	0.0019423	543.8121370244857	95.562	0.84496	95.562	95.451	96.296	0					46	19	4	0	0	0	0.11632	1	10445	10445		109.48	2.4708	1	5948300			22122	15060	18097	18120	24543	24543					0.06869397160471635
KDIRIGLLP	9	Unmodified	_KDIRIGLLP_					0	0	0		ENST00000569069.1_1_15:75658861-75660070:-|nuORF	ENST00000569069.1_1_15:75658861-75660070:-|nuORF	ENST00000569069.1_1_15:75658861-75660070:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.3106689453125	2	512.829309	1023.64407	1.7635	0.00090437	0.45929	0.00023554	2.2228	0.0011399	512.829389934331	87.318	1.0328	87.318	87.054	88.087	0					57	24	4	0	0	0	0.027164	1	9228	9228		68.787	4.5796	1	3715100			22123	13881	18098	18121	24544	24544					0.13318899127989425
KDIRKVLLEL	10	Unmodified	_KDIRKVLLEL_					0	0	0		tr|A0A553SSY8|A0A553SSY8_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04075PE=4SV=1	tr|A0A553SSY8|A0A553SSY8_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04075PE=4SV=1	tr|A0A553SSY8|A0A553SSY8_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04075PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	409.60736083984375	3	409.599212	1225.77581	0.77698	0.00031825	-3.3419	-0.0013688	-2.5649	-0.0010506	409.59744872105887	109.2	0.15862	108.01	107.87	108.03	-1.1978					4	2	2	0	0	0	0.026694	1	7825	7825		54.722	8.2656	1	2731.2			22124	34436	18099	18122	24545	24545					0.1719508442508868
KDIRLEVGRI	10	Unmodified	_KDIRLEVGRI_					0	0	0			REV__tr|A0A7D6VR58|A0A7D6VR58_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04190PE=4SV=1	REV__tr|A0A7D6VR58|A0A7D6VR58_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04190PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	400.2471008300781	3	400.247062	1197.71936	0.8134	0.00032556	-0.72327	-0.00028949	0.090132	3.6075E-05	400.24675032608036	56.071	2.0809	53.267	52.83	54.911	-2.804					98	41	3	0	0	0	0.5635	2	3966	3966;3972		46.457	6.3986	1	943420	+		22125	31389	18100	18123	24546;24547	24546					0.12840456588423876
KDIRNLYVT	9	Unmodified	_KDIRNLYVT_					0	0	0		ENSG00000119912|ENST00000265986|IDE;ENST00000478361.6_1_10:94240585-94297282:-|nuORF	ENSG00000119912|ENST00000265986|IDE	ENSG00000119912|ENST00000265986|IDE	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.8265991210938	2	561.319306	1120.62406	3.0339	0.001703	-1.8804	-0.0010555	1.1535	0.00064747	561.8206687927569	101.08	0.29475	101.08	100.9	101.19	0					10	6	2	0	0	0	0.027462	1	11226	11226		31.53	7.0106	1	275010			22126	3400	18101	18124	24548	24548					0.06857103397351239
KDIRSLNI	8	Unmodified	_KDIRSLNI_					0	0	0			REV__tr|A0A7D6VRH5|A0A7D6VRH5_9CLOTDUF2812domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01510PE=4SV=1	REV__tr|A0A7D6VRH5|A0A7D6VRH5_9CLOTDUF2812domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01510PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.80364990234375	2	479.787641	957.56073	-0.070498	-3.3824E-05	-0.45933	-0.00022038	-0.52982	-0.0002542	479.78750206881256	30.211	0.44738	30.211	29.986	30.433	0					9	8	2	0	0	0	0.028476	1	1157	1157		45.972	0	1	14853	+		22127	31418	18102	18125	24549	24549					0.0802516268013278
KDIRYLKD	8	Unmodified	_KDIRYLKD_					0	0	0		ENST00000454229.1_1_2:6636110-6636479:-|nuORF	ENST00000454229.1_1_2:6636110-6636479:-|nuORF	ENST00000454229.1_1_2:6636110-6636479:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	525.8043212890625	2	525.800749	1049.58694	0.27451	0.00014434	3.3224	0.0017469	3.597	0.0018913	525.8024025777379	72.228	0.61768	72.228	71.956	72.574	0					34	14	4	0	0	0	0.50206	1	7021	7021		77.318	7.69	1	1880600			22128	12084	18103	18126	24550	24550					0.06413431851615314
KDISVPTLL	9	Unmodified	_KDISVPTLL_					0	0	0		nc|ENSG00000164451|Q5JW98-2|CALHM4;nc|ENSG00000164451|Q5JW98-4|CALHM4;nc|ENSG00000164451|Q5JW98-3|CALHM4;ENSG00000164451|ENST00000368596|CALHM4	nc|ENSG00000164451|Q5JW98-2|CALHM4	nc|ENSG00000164451|Q5JW98-2|CALHM4	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.79962158203125	2	493.30005	984.585547	-0.8784	-0.00043331	2.558	0.0012618	1.6796	0.00082853	493.3010515986289	49.489	0.65094	49.489	49.206	49.856	0					21	14	2	0	0	0	0.027462	1	3704	3704		16.473	4.9621	1	410700			22129	6458	18104	18127	24551	24551					0.09263797762855575
KDISVVYAKI	10	Unmodified	_KDISVVYAKI_					0	0	0			REV__tr|A0A7D6ZSV1|A0A7D6ZSV1_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_17555PE=4SV=1	REV__tr|A0A7D6ZSV1|A0A7D6ZSV1_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_17555PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.7865600585938	2	568.339707	1134.66486	0.026097	1.4832E-05	-2.648	-0.001505	-2.6219	-0.0014901	568.3380321849753	46.961	0.83234	46.961	46.719	47.551	0					52	18	4	0	0	0	0.026782	1	3415	3415		30.318	0	1	1409500	+		22130	32193	18105	18128	24552	24552					0.10291444716995102
KDITSNEFNN	10	Unmodified	_KDITSNEFNN_					0	0	0			REV__tr|A0A7D6VUG7|A0A7D6VUG7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20480PE=4SV=1	REV__tr|A0A7D6VUG7|A0A7D6VUG7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20480PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	590.291748046875	2	591.275292	1180.53603	-1.1146	-0.00065902	-1.0203	-0.0006033	-2.1349	-0.0012623	591.2737382329358	69.925	0.29114	69.925	69.798	70.089	0					10	6	2	0	0	0	0.026994	1	6684	6684		32.812	6.0163	1	181620	+		22131	31676	18106	18129	24553	24553					-0.047015619838930434
KDIVMPTY	8	Unmodified	_KDIVMPTY_					0	0	0		ENSG00000134901|ENST00000376004|POGLUT2;ENST00000512118.1_1_5:127445889-127446054:+|nuORF;ENST00000460338.5_1_13:103443606-103451020:-|nuORF	ENSG00000134901|ENST00000376004|POGLUT2	ENSG00000134901|ENST00000376004|POGLUT2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.3089599609375	2	483.751879	965.489204	4.0643	0.0019661	2.7219	0.0013167	6.7862	0.0032828	483.7558837261849	131.83	0.36154	130.32	130.12	130.48	-1.5015					11	6	2	0	0	0	0.028476	1	12664	12664		12.959	0	1	8102.6			22132	4345	18107	18130	24554	24554					0.005079069312500906
KDIYEQAKEF	10	Unmodified	_KDIYEQAKEF_					0	0	0		tr|A0A7D6ZIW1|A0A7D6ZIW1_9CLOT1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamideisomeraseOS=ClostridiumintestinaleOX=36845GN=hisAPE=3SV=1	tr|A0A7D6ZIW1|A0A7D6ZIW1_9CLOT1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamideisomeraseOS=ClostridiumintestinaleOX=36845GN=hisAPE=3SV=1	tr|A0A7D6ZIW1|A0A7D6ZIW1_9CLOT1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamideisomeraseOS=ClostridiumintestinaleOX=36845GN=hisAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	424.7585144042969	3	424.215316	1269.62412	0.57693	0.00024474	3.7663	0.0015977	4.3432	0.0018425	424.2168214946657	45.93	2.268	45.93	45.068	47.336	0					74	51	2	0	0	0	0.027006	1	3395	3395		24.232	4.2013	1	422940			22133	35628	18108	18131	24555	24555					9.05860672446579E-05
KDIYRVTMQ	9	Oxidation (M)	_KDIYRVTM(Oxidation (M))Q_		KDIYRVTM(1)Q		KDIYRVTM(91)Q	0	0	1			REV__tr|A0A7D6VZ95|A0A7D6VZ95_9CLOTCapsidproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19250PE=4SV=1	REV__tr|A0A7D6VZ95|A0A7D6VZ95_9CLOTCapsidproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19250PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	585.3391723632812	2	585.302798	1168.59104	-2.4371	-0.0014264	-0.86719	-0.00050757	-3.3042	-0.001934	585.3022749005578	84.759	1.2338	82.498	82.162	83.395	-2.261					52	24	3	0	0	0	0.027309	1	5042	5042		90.601	24.172	1	188030	+		22134	31834	18109	18132	24556	24556		705			0.013491532830130382
KDKAWYLQ	8	Unmodified	_KDKAWYLQ_					0	0	0		tr|A0A7D6ZXE4|A0A7D6ZXE4_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12995PE=4SV=1	tr|A0A7D6ZXE4|A0A7D6ZXE4_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12995PE=4SV=1	tr|A0A7D6ZXE4|A0A7D6ZXE4_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12995PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.8204956054688	2	526.282192	1050.54983	-0.73503	-0.00038683	-3.2019	-0.0016851	-3.9369	-0.0020719	526.2796240534622	63.922	0.91899	60.447	60.012	60.931	-3.475					37	18	3	0	0	0	0.028476	1	4547	4547		49.442	2.9848	1	88852			22135	35876	18110	18133	24557	24557					0.026577603058285604
KDKEKFLII	9	Unmodified	_KDKEKFLII_					0	0	0			REV__ENST00000438469.2_1_1:146553889-146554591:-|nuORF	REV__ENST00000438469.2_1_1:146553889-146554591:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3499755859375	2	567.350074	1132.6856	-0.15448	-8.7644E-05	-0.62737	-0.00035594	-0.78185	-0.00044359	567.349810033163	92.316	1.6548	89.774	89.415	91.07	-2.5425					92	32	4	0	0	0	0.11471	1	8050	8050		93.195	2.8256	1	1056900	+		22136	25812	18111	18134	24558	24558					0.12456035096670348
KDKEKILML	9	Unmodified	_KDKEKILML_					0	0	0		tr|A0A7D6ZXA4|A0A7D6ZXA4_9CLOTAscorbate-specificPTSsystemEIIAcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11260PE=4SV=1	tr|A0A7D6ZXA4|A0A7D6ZXA4_9CLOTAscorbate-specificPTSsystemEIIAcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11260PE=4SV=1	tr|A0A7D6ZXA4|A0A7D6ZXA4_9CLOTAscorbate-specificPTSsystemEIIAcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11260PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	559.3345947265625	2	559.33611	1116.65767	0.059927	3.3519E-05	-4.3392	-0.0024271	-4.2793	-0.0023935	559.3337743770333	105.67	2.6036	104.33	103.89	106.49	-1.3482					139	50	4	0	0	0	0.1944	1	7462	7462		77.318	1.1479	1	6929000			22137	35871	18112	18135	24559	24559					0.10400388844914232
KDKEKILML	9	Unmodified	_KDKEKILML_					0	0	0		tr|A0A7D6ZXA4|A0A7D6ZXA4_9CLOTAscorbate-specificPTSsystemEIIAcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11260PE=4SV=1	tr|A0A7D6ZXA4|A0A7D6ZXA4_9CLOTAscorbate-specificPTSsystemEIIAcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11260PE=4SV=1	tr|A0A7D6ZXA4|A0A7D6ZXA4_9CLOTAscorbate-specificPTSsystemEIIAcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11260PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.3359985351562	2	559.33611	1116.65767	0.1153	6.449E-05	-4.2018	-0.0023502	-4.0865	-0.0022857	559.3338934185311	106.4	2.878	104.38	103.6	106.47	-2.0161					138	56	4	0	0	0	0.22621	1	9704	9704		71.877	4.3838	1	9929600			22138	35871	18112	18135	24560	24560					0.10400388844914232
KDKELYTQ	8	Unmodified	_KDKELYTQ_					0	0	0		ENSG00000160075|ENST00000291386|SSU72;SSU72|p.R97Dfs*11|1|0.03|ENSG00000160075|chr1:1544938-1544938|T/-|frameshift_variant;SSU72|p.R114Gfs*21|1|0.23|ENSG00000160075|chr1:1544887-1544888|-/GGCTGAGTCCCCAGCTCTGCCGGCTGCAGGCC|frameshift_variant;ENST00000378725.3_1_1:1480120-1509937:-|nuORF	ENSG00000160075|ENST00000291386|SSU72	ENSG00000160075|ENST00000291386|SSU72	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.7603759765625	2	512.769114	1023.52368	-0.20866	-0.000107	3.1156	0.0015976	2.9069	0.0014906	512.7706957357424	68.926	2.28	68.926	67.642	69.922	0					77	55	2	0	0	0	0.028476	1	6377	6377		39.253	0	1	829240			22139	6036	18113	18136	24561	24561					0.01285446343717922
KDKEMIITL	9	Unmodified	_KDKEMIITL_					0	0	0		tr|A0A7D6ZF81|A0A7D6ZF81_9CLOTAldose1-epimerasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13895PE=4SV=1	tr|A0A7D6ZF81|A0A7D6ZF81_9CLOTAldose1-epimerasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13895PE=4SV=1	tr|A0A7D6ZF81|A0A7D6ZF81_9CLOTAldose1-epimerasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13895PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.2569580078125	2	545.812467	1089.61038	2.5263	0.0013789	3.7668	0.002056	6.2931	0.0034349	546.3149859079876	94.139	0.63724	94.139	93.923	94.56	0					34	14	4	0	0	0	0.027455	1	10207	10207		19.997	7.7901	1	406070			22140	35502	18114	18137	24562	24562					0.06916109573921858
KDKGNPPLS	9	Unmodified	_KDKGNPPLS_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4;FAT4|p.I3243Efs*10|1|0.29|ENSG00000196159|chr4:125450742-125450743|-/GAAAA|frameshift_variant;FAT4|p.D3244Lfs*13|1|0.23|ENSG00000196159|chr4:125450744-125450745|-/ACTTACTGTTTCGGCAA|frameshift_variant	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MSMS	OvCa9_classI_Rep2	2	478.2637634277344	2	478.263999	954.513445	-1.4372	-0.00068734	0.98646	0.00047179	-0.45069	-0.00021555	478.2643712792569	61.352	1.7932	58.593	57.987	59.78	-2.7593					85	34	5	0	0	0	0.53483	1	4579	4579		39.253	3.6345	1	559570			22141	8571	18115	18138	24563	24563					0.03436883409131042
KDKHKQKQRHR	11	Unmodified	_KDKHKQKQRHR_					0	0	0			REV__ENST00000590234.5_1_18:47810059-47811374:-|nuORF	REV__ENST00000590234.5_1_18:47810059-47811374:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.27130126953125	3	496.958797	1487.85456	0.023213	1.1536E-05	1.3912	0.00069136	1.4144	0.00070289	496.95946425479605	52.632	0.35041	52.632	52.434	52.784	0					20	7	3	0	0	0	0.026232	1	4138	4138		15.921	0	1	334570	+		22142	20401	18116	18139	24564	24564					0.1301474950271313
KDKINVKSN	9	Unmodified	_KDKINVKSN_					0	0	0			REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3033447265625	2	523.303655	1044.59276	-2.1228	-0.0011108	2.0352	0.001065	-0.087543	-4.5811E-05	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.60342	1	11471	11471		31.53	1.0262	1	183010	+		22143	20958	18117	18140	24565	24565					0.07224530363305348
KDKIVRVN	8	Unmodified	_KDKIVRVN_					0	0	0			REV__nc|ENSG00000182872|P98175-5|RBM10	REV__nc|ENSG00000182872|P98175-5|RBM10	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.78485107421875	2	486.303458	970.592364	-2.0619	-0.0010027	1.8862	0.00091725	-0.17578	-8.548E-05	486.3042522578807	35.452	0.9949	32.742	32.454	33.449	-2.7097					44	19	3	0	0	0	0.028476	1	1482	1482		27.882	20.192	1	80750	+		22144	29044	18118	18141	24566	24566					0.10589155434081476
KDKIVRVN	8	Unmodified	_KDKIVRVN_					0	0	0			REV__nc|ENSG00000182872|P98175-5|RBM10	REV__nc|ENSG00000182872|P98175-5|RBM10	MULTI-MATCH	OvCa99_classI_Rep5	1		2	486.303458	970.592364	0.0040127	1.9514E-06	4.8436	0.0023554	4.8476	0.0023574	486.30401994446794	32.948	0.14516	32.948	32.844	32.989	0	0.10323	0.00086986	NaN	26.693	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6633.9	+		22145	29044	18118	18141							0.10589155434081476
KDKKAIHLI	9	Unmodified	_KDKKAIHLI_					0	0	0		ENST00000497292.1_1_20:46255794-46256373:+|nuORF	ENST00000497292.1_1_20:46255794-46256373:+|nuORF	ENST00000497292.1_1_20:46255794-46256373:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.7962036132812	2	533.342584	1064.67061	0.029488	1.5727E-05	-0.74871	-0.00039932	-0.71923	-0.00038359	533.3423655272809	115.96	0.98743	114.92	114.65	115.64	-1.0414					24	19	2	0	0	0	0.027462	1	8689	8689		24.519	0	1	32721			22146	12803	18119	18142	24567	24567					0.1408658801931324
KDKKEVEL	8	Unmodified	_KDKKEVEL_					0	0	0			REV__nc|ENSG00000151849|Q9HC77-2|CENPJ	REV__nc|ENSG00000151849|Q9HC77-2|CENPJ	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.7879333496094	2	494.787307	987.560061	-0.87372	-0.00043231	-0.83423	-0.00041277	-1.7079	-0.00084507	494.78748717653883	54.392	1.4872	51.144	50.619	52.106	-3.2474					73	28	4	0	0	0	0.61436	1	3371	3371		60.972	0	1	270750	+		22147	20260	18120	18143	24568	24568					0.06578323240421469
KDKKHIVL	8	Unmodified	_KDKKHIVL_					0	0	0		tr|A0A7D7ADS2|A0A7D7ADS2_9CLOTtRNAmodificationGTPaseMnmEOS=ClostridiumintestinaleOX=36845GN=mnmEPE=3SV=1	tr|A0A7D7ADS2|A0A7D7ADS2_9CLOTtRNAmodificationGTPaseMnmEOS=ClostridiumintestinaleOX=36845GN=mnmEPE=3SV=1	tr|A0A7D7ADS2|A0A7D7ADS2_9CLOTtRNAmodificationGTPaseMnmEOS=ClostridiumintestinaleOX=36845GN=mnmEPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	490.7748107910156	2	490.816202	979.617851	-1.1757	-0.00057703	0.28451	0.00013964	-0.89115	-0.00043739	490.81620613951407	91.239	0.96049	89.215	88.93	89.89	-2.0241					34	18	3	0	0	0	0.028476	1	5731	5731		76.847	41.646	1	64439			22148	36242	18121	18144	24569	24569					0.127226299565109
KDKKSKKKE	9	Unmodified	_KDKKSKKKE_					0	0	0			REV__ENSG00000130826|ENST00000369550|DKC1	REV__ENSG00000130826|ENST00000369550|DKC1	MULTI-SECPEP	OvCa9_classI_Rep3	3	560.7978515625	2	559.84823	1117.68191	-1.345	-0.000753	4.376	0.0024499	3.031	0.0016969	559.8510304872489	101.32	0.99126	99.719	99.243	100.23	-1.6053					25	14	2	0	0	0	0.027452	1	6952	6952		58.23	0	1	31878	+		22149	18977	18122	18145	24570	24570					0.1277736532281324
KDKKVRVF	8	Unmodified	_KDKKVRVF_					0	0	0		nc|ENSG00000153956|P54289-4|CACNA2D1;nc|ENSG00000153956|P54289-5|CACNA2D1;nc|ENSG00000153956|P54289-3|CACNA2D1;ENSG00000153956|ENST00000356860|CACNA2D1;nc|ENSG00000153956|P54289|CACNA2D1;CACNA2D1|p.N509Qfs*10|1|0.07|ENSG00000153956|chr7:82005492-82005493|-/A|frameshift_variant;ENST00000475237.5_1_7:81636985-81662181:-|nuORF;ENST00000492734.1_1_7:81641460-81667482:-|nuORF	nc|ENSG00000153956|P54289-4|CACNA2D1	nc|ENSG00000153956|P54289-4|CACNA2D1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.9540710449219	2	510.321651	1018.62875	-0.54684	-0.00027907	0.33136	0.0001691	-0.21549	-0.00010997	510.3216866968407	48.343	0.77105	45.235	44.938	45.709	-3.1077					28	14	3	0	0	0	0.028476	1	2707	2707		29.15	0	1	59561			22150	5704	18123	18146	24571	24571					0.12018032330797723
KDKLLKENLRN	11	Unmodified	_KDKLLKENLRN_					0	0	0		ENST00000489323.5_1_14:74495895-74513566:+|nuORF	ENST00000489323.5_1_14:74495895-74513566:+|nuORF	ENST00000489323.5_1_14:74495895-74513566:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	457.60748291015625	3	457.608659	1369.80415	-3.7463	-0.0017143	2.2282	0.0010197	-1.518	-0.00069467	457.60971240856696	157.06	2.9403	156.83	155.39	158.33	-0.22696					220	89	3	0	0	0	0.72502	1	16019	16019		15.337	1.2515	1	46638			22151	12673	18124	18147	24572	24572					0.1340378233435331
KDKLNIYIV	9	Unmodified	_KDKLNIYIV_					0	0	0			REV__ENST00000504733.1_1_3:130546621-130547209:+|nuORF	REV__ENST00000504733.1_1_3:130546621-130547209:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.8102416992188	2	553.334424	1104.6543	1.7374	0.00096134	-0.66876	-0.00037005	1.0686	0.00059129	553.3340700611251	96.901	0.298	96.901	96.71	97.008	0					9	6	2	0	0	0	0.027462	1	10607	10607		21.96	6.3181	1	341710	+		22152	26863	18125	18148	24573	24573					0.10615462062560255
KDKPKVIII	9	Unmodified	_KDKPKVIII_					0	0	0		nc|ENSG00000137752|P29466-2|CASP1;ENSG00000137752|ENST00000533400|CASP1;ENST00000529871.1_1_11:104897559-104905036:-|nuORF;nc|ENSG00000137752|P29466-4|CASP1;nc|ENSG00000137752|P29466-3|CASP1	nc|ENSG00000137752|P29466-2|CASP1	nc|ENSG00000137752|P29466-2|CASP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.3566284179688	2	527.35516	1052.69577	0.64821	0.00034183	-0.077186	-4.0705E-05	0.57102	0.00030113	527.3550440559598	85.182	2.5141	82.536	82.215	84.729	-2.6463					145	50	5	0	0	0	0.21231	1	7228	7228		74.255	4.6274	1	2786200			22153	4611	18126	18149	24574	24574					0.17152642821906738
KDKPSDRLS	9	Unmodified	_KDKPSDRLS_					0	0	0			REV__chr19:32731883-32738856|104|28.57|0.86|5.06|+|ENST00000647536|TDRD12,TDRD12	REV__chr19:32731883-32738856|104|28.57|0.86|5.06|+|ENST00000647536|TDRD12,TDRD12	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2670288085938	2	523.285463	1044.55637	2.1132	0.0011058	4.0329	0.0021103	6.146	0.0032161	523.2876254089898	94.68	0.89759	94.68	94.177	95.075	0					39	20	3	0	0	0	0.027462	1	10274	10274		28.081	0	1	949900	+		22154	15973	18127	18150	24575	24575					0.03587653466570373
KDKRKRRR	8	Unmodified	_KDKRKRRR_					0	0	0			REV__ENSG00000266714|ENST00000645453|MYO15B	REV__ENSG00000266714|ENST00000645453|MYO15B	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.356689453125	2	571.870697	1141.72684	-0.13003	-7.4362E-05	1.5639	0.00089436	1.4339	0.00082	571.8717576140587	30.876	0.19876	30.876	30.731	30.93	0					5	3	2	0	0	0	0.028476	1	1213	1213		29.15	4.9468	1	11572	+		22155	23589	18128	18151	24576	24576					0.16164653699365772
KDKRPPIL	8	Unmodified	_KDKRPPIL_					0	0	0		nc|ENSG00000048649|Q96T23-2|RSF1;ENSG00000048649|ENST00000308488|RSF1;nc|ENSG00000048649|Q96T23-3|RSF1	nc|ENSG00000048649|Q96T23-2|RSF1	nc|ENSG00000048649|Q96T23-2|RSF1	MULTI-SECPEP	OvCa9_classI_Rep2	2	483.2921447753906	2	483.808377	965.6022	1.6169	0.00078228	-1.6541	-0.00080026	-0.037164	-1.798E-05	483.8074470512566	88.771	1.084	87.403	87.086	88.17	-1.3676					35	21	2	0	0	0	0.028476	1	7879	7879		12.207	0.69583	1	128550			22156	1158	18129	18152	24577	24577					0.11802343439467222
KDKSRETADL	10	Unmodified	_KDKSRETADL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.812255859375	2	581.806759	1161.59897	2.2806	0.0013269	-3.645	-0.0021207	-1.3644	-0.0007938	581.8045855158231	94.23	0.42624	94.23	93.964	94.39	0					22	9	3	0	0	0	0.026994	1	10270	10270		25.574	3.6142	1	974880			22157	5793;36288	18130	18153	24578	24578					0.024630038041550506
KDKVEKII	8	Unmodified	_KDKVEKII_					0	0	0		tr|A0A7D6ZSW6|A0A7D6ZSW6_9CLOTEthanolamineutilizationproteinEutJOS=ClostridiumintestinaleOX=36845GN=eutJPE=4SV=1	tr|A0A7D6ZSW6|A0A7D6ZSW6_9CLOTEthanolamineutilizationproteinEutJOS=ClostridiumintestinaleOX=36845GN=eutJPE=4SV=1	tr|A0A7D6ZSW6|A0A7D6ZSW6_9CLOTEthanolamineutilizationproteinEutJOS=ClostridiumintestinaleOX=36845GN=eutJPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.2873840332031	2	486.808042	971.601532	-1.7079	-0.00083143	0.32956	0.00016043	-1.3784	-0.000671	486.8084509100366	49.14	1.5583	45.998	45.468	47.026	-3.1416					43	29	2	0	0	0	0.028476	1	2749	2749		17.365	0	1	93150			22158	35745	18131	18154	24579	24579					0.11459503999765275
KDKVGEIQ	8	Unmodified	_KDKVGEIQ_					0	0	0			REV__tr|A0A7D6VN15|A0A7D6VN15_9CLOTFlagellarbiosynthesisanti-sigmafactorFlgMOS=ClostridiumintestinaleOX=36845GN=HZF06_17030PE=4SV=1	REV__tr|A0A7D6VN15|A0A7D6VN15_9CLOTFlagellarbiosynthesisanti-sigmafactorFlgMOS=ClostridiumintestinaleOX=36845GN=HZF06_17030PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.75946044921875	2	458.758549	915.502546	-0.018242	-8.3685E-06	-0.13539	-6.2111E-05	-0.15363	-7.048E-05	458.7583917368632	59.321	1.5834	55.929	55.451	57.035	-3.392					70	31	4	0	0	0	0.37357	1	3944	3944		93.195	5.4412	1	1509100	+		22159	31155	18132	18155	24580	24580					0.04141481034866956
KDKYLAKHS	9	Unmodified	_KDKYLAKHS_					0	0	0		nc|ENSG00000130830|Q00013-3|MPP1;ENSG00000130830|ENST00000369534|MPP1;nc|ENSG00000130830|Q00013-2|MPP1;ENST00000493871.1_1_X:154012222-154014489:-|nuORF;ENST00000462825.5_1_X:154011696-154028031:-|nuORF;ENST00000475943.5_1_X:154013074-154033702:-|nuORF	nc|ENSG00000130830|Q00013-3|MPP1	nc|ENSG00000130830|Q00013-3|MPP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.2869873046875	2	545.306198	1088.59784	-0.25724	-0.00014028	-0.61461	-0.00033515	-0.87185	-0.00047543	545.3056228303981	56.432	0.3623	56.432	56.261	56.623	0					15	8	3	0	0	0	0.027462	1	4703	4703		27.882	8.7787	1	186380			22160	4021	18133	18156	24581	24581					0.057088342259021374
KDLAFQVVSE	10	Unmodified	_KDLAFQVVSE_					0	0	0			REV__nc|ENSG00000167733|Q7Z5J1|HSD11B1L	REV__nc|ENSG00000167733|Q7Z5J1|HSD11B1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2774047851562	2	568.303321	1134.59209	2.0738	0.0011785	-3.0831	-0.0017521	-1.0093	-0.00057359	568.301496058921	98.732	1.0332	98.732	98.121	99.154	0					34	24	2	0	0	0	0.026694	1	10891	10891		63.534	28.382	1	777630	+		22161	28985	18134	18157	24582	24582					0.030176909235933636
KDLAFQVVSE	10	Unmodified	_KDLAFQVVSE_					0	0	0			REV__nc|ENSG00000167733|Q7Z5J1|HSD11B1L	REV__nc|ENSG00000167733|Q7Z5J1|HSD11B1L	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	568.303321	1134.59209	-0.51396	-0.00029208	-3.1264	-0.0017767	-3.6403	-0.0020688	568.3016076064733	100.68	0.66397	98.414	98.083	98.746	-2.2665	-0.15931	-4.1682E-05	NaN	31.634	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20936	+		22162	28985	18134	18157							0.030176909235933636
KDLDEEYY	8	Unmodified	_KDLDEEYY_					0	0	0		ENSG00000143515|ENST00000368489|ATP8B2;nc|ENSG00000143515|P98198|ATP8B2;nc|ENSG00000143515|P98198-3|ATP8B2	ENSG00000143515|ENST00000368489|ATP8B2	ENSG00000143515|ENST00000368489|ATP8B2	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.2723388671875	2	537.734937	1073.45532	2.4179	0.0013002	-4.3995	-0.0023657	-1.9816	-0.0010656	537.732298442602	89.103	0.39169	89.103	88.843	89.235	0					16	9	2	0	0	0	0.028476	1	9503	9503		35.618	11.416	1	1413400			22163	5067	18135	18158	24583	24583					-0.07846843026800343
KDLDFINLL	9	Unmodified	_KDLDFINLL_					0	0	0		nc|ENSG00000064886|Q15782-5|CHI3L2;nc|ENSG00000064886|Q15782-6|CHI3L2;ENSG00000064886|ENST00000369748|CHI3L2	nc|ENSG00000064886|Q15782-5|CHI3L2	nc|ENSG00000064886|Q15782-5|CHI3L2	MULTI-MSMS	OvCa9_classI_Rep3	3	545.8135986328125	2	545.810782	1089.60701	-1.0624	-0.00057986	1.0509	0.00057359	-0.011484	-6.2683E-06	545.8110820459647	135.02	1.0828	133.9	133.65	134.74	-1.1226					47	21	4	0	0	0	0.44248	1	10895	10895		47.96	0.30219	1	105450			22164	1307	18136	18159	24584	24584					0.0657918279155183
KDLDLKIVWM	10	Unmodified	_KDLDLKIVWM_					0	0	0		tr|A0A7D6VPR8|A0A7D6VPR8_9CLOTAntisigmafactorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12680PE=4SV=1	tr|A0A7D6VPR8|A0A7D6VPR8_9CLOTAntisigmafactorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12680PE=4SV=1	tr|A0A7D6VPR8|A0A7D6VPR8_9CLOTAntisigmafactorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12680PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	421.77215576171875	3	420.905537	1259.69478	-0.58994	-0.00024831	3.6607	0.0015408	3.0708	0.0012925	420.90688636432503	74.723	1.1602	71.492	71.24	72.4	-3.2308					58	23	5	0	0	0	0.027193	1	5933	5933		11.636	0	1	244850			22165	34791	18137	18160	24585	24585					0.07532060390690276
KDLDLVFRV	9	Unmodified	_KDLDLVFRV_					0	0	0		ENSG00000158246|ENST00000289166|TENT5B	ENSG00000158246|ENST00000289166|TENT5B	ENSG00000158246|ENST00000289166|TENT5B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.8036499023438	2	552.824224	1103.63389	-0.89872	-0.00049684	2.0199	0.0011166	1.1212	0.00061981	552.8252225993481	42.196	0.50192	39.216	39.064	39.566	-2.9804					20	9	3	0	0	0	0.027462	1	1981	1981		14.865	0	1	57586			22166	5939	18138	18161	24586	24586					0.08622291402775772
KDLELPEPL	9	Unmodified	_KDLELPEPL_					0	0	0			REV__ENSG00000126070|ENST00000373191|AGO3	REV__ENSG00000126070|ENST00000373191|AGO3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.3573608398438	2	527.294965	1052.57538	0.63407	0.00033434	-1.5403	-0.0008122	-0.90624	-0.00047786	527.2941517226704	85.119	0.6814	82.473	82.263	82.945	-2.6463					23	13	3	0	0	0	0.027402	1	7202	7202		87.754	7.8151	1	84904	+		22167	18770	18139	18162	24587	24587					0.05119190037612498
KDLEPTTP	8	Unmodified	_KDLEPTTP_					0	0	0		ENST00000481482.5_1_7:138818528-138853308:+|nuORF;nc|ENSG00000105948|A0AVF1-2|IFT56;nc|ENSG00000105948|A0AVF1-3|IFT56;ENSG00000105948|ENST00000464848|TTC26	ENST00000481482.5_1_7:138818528-138853308:+|nuORF	ENST00000481482.5_1_7:138818528-138853308:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	451.2546691894531	2	450.737283	899.460012	-0.043233	-1.9487E-05	1.6341	0.00073654	1.5908	0.00071705	450.737642344934	55.866	0.32925	55.866	55.723	56.052	0					10	7	2	0	0	0	0.028476	1	4616	4616		40.573	16.37	1	79738			22168	2515	18140	18163	24588	24588					0.0062608590659465335
KDLGITILL	9	Unmodified	_KDLGITILL_					0	0	0		tr|A0A553SR16|A0A553SR16_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00145PE=3SV=1	tr|A0A553SR16|A0A553SR16_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00145PE=3SV=1	tr|A0A553SR16|A0A553SR16_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00145PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.3182067871094	2	493.318243	984.621933	-1.0868	-0.00053615	1.0496	0.00051777	-0.037261	-1.8381E-05	493.3186384956746	124.71	1.8285	123.31	123.02	124.85	-1.3908					99	35	4	0	0	0	0.3076	1	11859	11859		62.107	14.45	1	724180			22169	34219	18141	18164	24589	24589					0.12900674659567812
KDLGLLELI	9	Unmodified	_KDLGLLELI_					0	0	0			REV__tr|A0A7D7AEC4|A0A7D7AEC4_9CLOTP-IIfamilynitrogenregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01925PE=4SV=1	REV__tr|A0A7D7AEC4|A0A7D7AEC4_9CLOTP-IIfamilynitrogenregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01925PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.3158264160156	2	507.3157	1012.61685	-1.2891	-0.00065398	1.1986	0.00060809	-0.090461	-4.5892E-05	507.3161252150664	116.87	1.585	116.74	116.42	118	-0.12869					86	31	4	0	0	0	0.2784	2	11171	11171;11188		65.465	3.358	1	305710	+		22170	32703	18142	18165	24590;24591	24590					0.11104370796954299
KDLGLLELI	9	Unmodified	_KDLGLLELI_					0	0	0			REV__tr|A0A7D7AEC4|A0A7D7AEC4_9CLOTP-IIfamilynitrogenregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01925PE=4SV=1	REV__tr|A0A7D7AEC4|A0A7D7AEC4_9CLOTP-IIfamilynitrogenregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01925PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	507.3156433105469	2	507.3157	1012.61685	-0.96298	-0.00048854	0.6153	0.00031215	-0.34769	-0.00017639	507.3158623915197	117.79	1.8845	116.76	116.44	118.32	-1.0324					99	37	4	0	0	0	0.2784	1	8860	8860		65.465	4.4934	1	576140	+		22171	32703	18142	18165	24592	24592					0.11104370796954299
KDLGLLELI	9	Unmodified	_KDLGLLELI_					0	0	0			REV__tr|A0A7D7AEC4|A0A7D7AEC4_9CLOTP-IIfamilynitrogenregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01925PE=4SV=1	REV__tr|A0A7D7AEC4|A0A7D7AEC4_9CLOTP-IIfamilynitrogenregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01925PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.3145751953125	2	507.3157	1012.61685	-1.2635	-0.00064101	0.79123	0.00040141	-0.4723	-0.0002396	507.31593965363254	118.1	1.9854	116.76	116.42	118.4	-1.3444					95	37	4	0	0	0	0.2784	1	11054	11054		65.465	5.1714	1	576430	+		22172	32703	18142	18165	24593	24593					0.11104370796954299
KDLIIVKIT	9	Unmodified	_KDLIIVKIT_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8102416992188	2	521.847167	1041.67978	-0.43778	-0.00022845	2.3319	0.0012169	1.8941	0.00098844	521.8481115714852	114.49	0.50049	114.49	114.29	114.79	0					15	10	2	0	0	0	0.027462	1	13047	13047		8.6937	0	1	62518	+		22173	28942	18143	18166	24594	24594					0.16060936584972296
KDLKKKMS	8	Unmodified	_KDLKKKMS_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.2776184082031	2	489.294245	976.573937	-2.5556	-0.0012504	-2.9289	-0.0014331	-5.4845	-0.0026835	489.2926271821743	104.23	0.46966	104.23	103.94	104.41	0					20	10	3	0	0	0	0.028476	1	11692	11692		12.207	0	1	448640	+		22174	20262	18144	18167	24595	24595					0.08471277467867822
KDLKQKLII	9	Unmodified	_KDLKQKLII_					0	0	0		ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	MULTI-SECPEP	OvCa9_classI_Rep2	2	549.8292236328125	2	549.865892	1097.71723	0.84422	0.00046421	0.73156	0.00040226	1.5758	0.00086646	549.8664593676888	82.218	0.15708	80.57	80.491	80.648	-1.6485					4	2	2	0	0	0	0.027433	1	6999	6999		71.296	25.344	1	6079.7			22175	6553	18145	18168	24596	24596					0.17228027850592298
KDLLDLHKS	9	Unmodified	_KDLLDLHKS_					0	0	0		ENST00000534032.5_1_11:65652243-65653031:-|nuORF;ENSG00000172500|ENST00000357519|FIBP;nc|ENSG00000172500|O43427|FIBP	ENST00000534032.5_1_11:65652243-65653031:-|nuORF	ENST00000534032.5_1_11:65652243-65653031:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.8259887695312	2	534.806031	1067.59751	-0.40009	-0.00021397	1.6479	0.0008813	1.2478	0.00066733	534.8051868708138	97.823	0.40887	95.444	95.267	95.675	-2.3786					12	7	2	0	0	0	0.027462	1	8670	8670		31.53	12.17	1	15354			22176	7301	18146	18169	24597	24597					0.06641414506020737
KDLLDLHKS	9	Unmodified	_KDLLDLHKS_					0	0	0		ENST00000534032.5_1_11:65652243-65653031:-|nuORF;ENSG00000172500|ENST00000357519|FIBP;nc|ENSG00000172500|O43427|FIBP	ENST00000534032.5_1_11:65652243-65653031:-|nuORF	ENST00000534032.5_1_11:65652243-65653031:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	534.806031	1067.59751	-0.68631	-0.00036704	3.4095	0.0018234	2.7232	0.0014564	534.8058487434296	96.452	0.44624	95.424	95.212	95.658	-1.0281	-0.057551	0.0017213	NaN	31.53	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17733			22177	7301	18146	18169							0.06641414506020737
KDLLDLHKS	9	Unmodified	_KDLLDLHKS_					0	0	0		ENST00000534032.5_1_11:65652243-65653031:-|nuORF;ENSG00000172500|ENST00000357519|FIBP;nc|ENSG00000172500|O43427|FIBP	ENST00000534032.5_1_11:65652243-65653031:-|nuORF	ENST00000534032.5_1_11:65652243-65653031:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	534.806031	1067.59751	0.17528	9.3741E-05	0.34305	0.00018346	0.51833	0.00027721	534.804530817511	97.336	0.40775	95.576	95.362	95.77	-1.7595	0.094851	-0.0015586	NaN	31.53	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19445			22178	7301	18146	18169							0.06641414506020737
KDLLKHLE	8	Unmodified	_KDLLKHLE_					0	0	0			REV__ENSG00000175414|ENST00000310389|ARL10	REV__ENSG00000175414|ENST00000310389|ARL10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.7720947265625	2	498.297842	994.581131	-0.23503	-0.00011712	1.518	0.00075641	1.283	0.00063929	498.29848900120635	102.51	0.47383	100.31	100.1	100.57	-2.1994					13	8	2	0	0	0	0.028476	1	9216	9216		37.812	0	1	23958	+		22179	21896	18147	18170	24598	24598					0.08362333339948691
KDLLKKVK	8	Unmodified	_KDLLKKVK_					0	0	0		nc|ENSG00000135913|Q86T82-2|USP37;ENSG00000135913|ENST00000258399|USP37	nc|ENSG00000135913|Q86T82-2|USP37	nc|ENSG00000135913|Q86T82-2|USP37	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.3088684082031	2	486.334227	970.653902	-0.19268	-9.3708E-05	-2.0805	-0.0010118	-2.2732	-0.0011055	486.33330633049906	30.408	0.29682	30.408	30.285	30.582	0					6	5	2	0	0	0	0.028476	1	1180	1180		33.516	0	1	22180			22180	4427	18148	18171	24599	24599					0.16740087133371162
KDLLKTTIK	9	Unmodified	_KDLLKTTIK_					0	0	0			REV__tr|A0A7D6ZIU6|A0A7D6ZIU6_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08475PE=4SV=1	REV__tr|A0A7D6ZIU6|A0A7D6ZIU6_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08475PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.3084716796875	2	530.342249	1058.66995	-0.52558	-0.00027873	4.0273	0.0021358	3.5017	0.0018571	530.3450935452514	53.79	0.24512	53.79	53.609	53.854	0					11	5	3	0	0	0	0.027462	1	4277	4277		30.318	4.8675	1	600900	+		22181	32069	18149	18172	24600	24600					0.14295748579593237
KDLLLKLL	8	Unmodified	_KDLLLKLL_					0	0	0		tr|A0A553SI26|A0A553SI26_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_14030PE=4SV=1	tr|A0A553SI26|A0A553SI26_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_14030PE=4SV=1	tr|A0A553SI26|A0A553SI26_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_14030PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.2956848144531	2	478.331153	954.647754	0.44782	0.00021421	-0.61793	-0.00029558	-0.17012	-8.1372E-05	478.3306523873285	98.225	0.49908	95.846	95.624	96.124	-2.3786					14	9	2	0	0	0	0.028476	1	8724	8724		27.882	0	1	14326			22182	33336	18150	18173	24601	24601					0.16861568901833834
KDLLNQSLL	9	Unmodified	_KDLLNQSLL_					0	0	0			REV__tr|A0A7D6ZRU1|A0A7D6ZRU1_9CLOTCBSdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05065PE=4SV=1	REV__tr|A0A7D6ZRU1|A0A7D6ZRU1_9CLOTCBSdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05065PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.3095703125	2	522.308406	1042.60226	-1.3075	-0.00068294	-0.50604	-0.00026431	-1.8136	-0.00094724	522.3076708198822	53.786	1.7405	50.538	50.161	51.901	-3.2474					72	33	4	0	0	0	0.1149	1	3322	3322		93.143	5.4468	1	1360800	+		22183	32166	18151	18174	24602	24602					0.08266298648823067
KDLLSSVVVLP	11	Unmodified	_KDLLSSVVVLP_					0	0	0		tr|A0A7D6VRG8|A0A7D6VRG8_9CLOTFRGdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06920PE=4SV=1	tr|A0A7D6VRG8|A0A7D6VRG8_9CLOTFRGdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06920PE=4SV=1	tr|A0A7D6VRG8|A0A7D6VRG8_9CLOTFRGdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06920PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	585.3660888671875	2	585.360639	1168.70673	1.3609	0.00079659	0.51713	0.0003027	1.878	0.0010993	585.3608017973985	130.2	0.71349	130.2	129.87	130.58	0					29	14	3	0	0	0	0.54114	1	15106	15106		50.034	5.0113	1	211630			22184	34930	18152	18175	24603	24603					0.1291200040552667
KDLMLLRK	8	Unmodified	_KDLMLLRK_					0	0	0		ENST00000301180.9_1_12:51102235-51102331:+|nuORF	ENST00000301180.9_1_12:51102235-51102331:+|nuORF	ENST00000301180.9_1_12:51102235-51102331:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	508.8153381347656	2	508.817887	1015.62122	-0.71731	-0.00036498	-4.4546	-0.0022666	-5.1719	-0.0026315	508.8155586093284	74.871	5.3666	72.9	72.481	77.848	-1.9711					298	103	5	0	0	0	0.42649	1	6171	6171		84.916	2.6105	1	7287100			22185	10184	18153	18176	24604	24604					0.11403556738866882
KDLNTVVL	8	Unmodified	_KDLNTVVL_					0	0	0			REV__ENSG00000061676|ENST00000361354|NCKAP1	REV__ENSG00000061676|ENST00000361354|NCKAP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.75146484375	2	451.271293	900.528032	2.1835	0.00098535	0.13552	6.1155E-05	2.319	0.0010465	451.2711577398478	78.026	0.62201	78.026	77.672	78.294	0					25	14	3	0	0	0	0.028476	1	7904	7904		21.96	6.3181	1	603200	+		22186	16745	18154	18177	24605	24605					0.07378955557271638
KDLNVKELK	9	Unmodified	_KDLNVKELK_					0	0	0		nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-4|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	MULTI-MSMS	OvCa9_classI_Rep3	3	543.8305053710938	2	543.829506	1085.64446	-0.67163	-0.00036525	4.0981	0.0022287	3.4265	0.0018634	543.8315347045365	116.65	1.9799	115.61	115.24	117.22	-1.0414					64	39	2	0	0	0	0.2422	1	8714	8714		69.628	3.1983	1	209810			22187	4667	18155	18178	24606	24606					0.10506274057161136
KDLPPLLLKL	10	Unmodified	_KDLPPLLLKL_					0	0	0		nc|ENSG00000135372|Q9H0A0-2|NAT10;ENSG00000135372|ENST00000257829|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	nc|ENSG00000135372|Q9H0A0-2|NAT10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.3111572265625	2	575.383917	1148.75328	-1.1381	-0.00065482	1.9383	0.0011152	0.80021	0.00046043	575.3858162045562	99.615	0.20732	97.289	97.108	97.315	-2.3253					5	3	2	0	0	0	0.026734	1	8882	8882		47.657	26.71	1	19207			22188	4371	18156	18179	24607	24607					0.18485485027463255
KDLQDNHF	8	Unmodified	_KDLQDNHF_					0	0	0		ENSG00000214866|ENST00000399143|DCDC2C	ENSG00000214866|ENST00000399143|DCDC2C	ENSG00000214866|ENST00000399143|DCDC2C	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.81500244140625	2	508.743431	1015.47231	-0.71984	-0.00036621	1.4954	0.00076077	0.77554	0.00039455	508.7455461043765	74.793	0.51534	72.821	72.586	73.102	-1.9711					13	9	2	0	0	0	0.028476	1	6123	6123		84.916	18.486	1	15908			22189	9187	18157	18180	24608	24608					-0.034808776303407285
KDLQRDELV	9	Unmodified	_KDLQRDELV_					0	0	0		nc|ENSG00000170959|M0R2J8|DCDC1;ENSG00000170959|ENST00000684477|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	558.8147583007812	2	558.306395	1114.59824	-1.0093	-0.00056351	0.46061	0.00025716	-0.54872	-0.00030635	558.3067845712212	49.935	1.2466	46.794	46.301	47.548	-3.1416					37	23	2	0	0	0	0.027462	1	2799	2799		42.864	0	1	242750			22190	7158	18158	18181	24609	24609					0.045522091550765253
KDLRKALCL	9	Unmodified	_KDLRKALCL_					0	0	0		ENST00000510312.6_1_5:73178320-73193923:+|nuORF;nc|ENSG00000214944|Q8N1W1-5|ARHGEF28;nc|ENSG00000214944|Q8N1W1-4|ARHGEF28;nc|ENSG00000214944|Q8N1W1-3|ARHGEF28;ENSG00000214944|ENST00000513042|ARHGEF28;nc|ENSG00000214944|Q8N1W1-6|ARHGEF28	ENST00000510312.6_1_5:73178320-73193923:+|nuORF	ENST00000510312.6_1_5:73178320-73193923:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.3084716796875	2	530.320794	1058.62703	-0.48687	-0.0002582	-0.37741	-0.00020015	-0.86428	-0.00045834	530.320291613969	53.863	0.61617	53.863	53.432	54.048	0					25	11	4	0	0	0	0.027462	1	4277	4277		44.117	19.598	1	1673700			22191	9191	18159	18182	24610	24610					0.10006655250526819
KDLRKFLE	8	Unmodified	_KDLRKFLE_					0	0	0		GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant;ENSG00000131459|ENST00000253778|GFPT2;GFPT2|p.K136Qfs*18|1|0.12|ENSG00000131459|chr5:180330828-180330829|-/TG|frameshift_variant	GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant	GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.2686767578125	2	524.811116	1047.60768	-1.503	-0.00078877	0.87379	0.00045858	-0.62917	-0.00033019	524.8114039952846	71.605	1.7531	68.149	67.44	69.193	-3.4563					76	35	3	0	0	0	0.028476	1	5450	5450		27.882	0	1	421550			22192	4066	18160	18183	24611	24611					0.08578022231267823
KDLSFIKV	8	Unmodified	_KDLSFIKV_					0	0	0		nc|ENSG00000123836|O60825-2|PFKFB2;ENSG00000123836|ENST00000367080|PFKFB2;ENST00000411990.6_1_1:207235951-207252361:+|nuORF;PFKFB2|p.P361Lfs*53|1|0.06|ENSG00000123836|chr1:207069516-207069516|T/-|frameshift_variant	nc|ENSG00000123836|O60825-2|PFKFB2	nc|ENSG00000123836|O60825-2|PFKFB2	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.2930908203125	2	475.289485	948.564418	2.5782	0.0012254	0.66759	0.0003173	3.2458	0.0015427	475.28965809636975	89.138	0.59191	89.138	88.843	89.435	0					23	14	2	0	0	0	0.028476	1	9548	9548		30.504	0	1	327100			22193	3614	18161	18184	24612	24612					0.08807832453999254
KDLSKEELD	9	Unmodified	_KDLSKEELD_					0	0	0		tr|A0A7D6W066|A0A7D6W066_9CLOT1-acyl-sn-glycerol-3-phosphateacyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22695PE=3SV=1	tr|A0A7D6W066|A0A7D6W066_9CLOT1-acyl-sn-glycerol-3-phosphateacyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22695PE=3SV=1	tr|A0A7D6W066|A0A7D6W066_9CLOT1-acyl-sn-glycerol-3-phosphateacyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22695PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	539.30078125	2	538.777136	1075.53972	-0.24045	-0.00012955	-3.145	-0.0016945	-3.3855	-0.001824	538.7742503092927	97.813	0.75475	95.435	95.166	95.921	-2.3786					16	14	2	0	0	0	0.027453	1	8649	8649		30.318	0	1	45842			22194	35373	18162	18185	24613	24613					0.004971077899426746
KDLTYLID	8	Unmodified	_KDLTYLID_					0	0	0		tr|A0A553SMA5|A0A553SMA5_NIACIStageIIsporulationproteinPOS=NialliacirculansOX=1397GN=CEQ21_22195PE=4SV=1	tr|A0A553SMA5|A0A553SMA5_NIACIStageIIsporulationproteinPOS=NialliacirculansOX=1397GN=CEQ21_22195PE=4SV=1	tr|A0A553SMA5|A0A553SMA5_NIACIStageIIsporulationproteinPOS=NialliacirculansOX=1397GN=CEQ21_22195PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.80975341796875	2	490.768583	979.522613	-1.605	-0.00078767	-2.7398	-0.0013446	-4.3447	-0.0021323	490.7678834157806	64.049	0.4382	64.049	63.732	64.17	0					14	10	3	0	0	0	0.028476	1	5764	5764		56.721	26.217	1	180150			22195	33814	18163	18186	24614	24614					0.032032319747941074
KDLVADIKA	9	Unmodified	_KDLVADIKA_					0	0	0			REV__tr|A0A553SLH6|A0A553SLH6_NIACISporulationproteinSpoOMOS=NialliacirculansOX=1397GN=CEQ21_20635PE=4SV=1	REV__tr|A0A553SLH6|A0A553SLH6_NIACISporulationproteinSpoOMOS=NialliacirculansOX=1397GN=CEQ21_20635PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	486.790283203125	2	486.78985	971.565146	-0.32843	-0.00015987	-0.16952	-8.2523E-05	-0.49795	-0.0002424	486.789706136483	47.442	1.1276	47.442	47.165	48.292	0					57	25	4	0	0	0	0.036986	1	3430	3430		129.42	6.2132	1	3765700	+		22196	30225	18164	18187	24615	24615					0.07822627103018931
KDLVFEQEL	9	Unmodified	_KDLVFEQEL_					0	0	0		tr|A0A7D6ZYN4|A0A7D6ZYN4_9CLOTLacIfamilyDNA-bindingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02970PE=4SV=1	tr|A0A7D6ZYN4|A0A7D6ZYN4_9CLOTLacIfamilyDNA-bindingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02970PE=4SV=1	tr|A0A7D6ZYN4|A0A7D6ZYN4_9CLOTLacIfamilyDNA-bindingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02970PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	560.7977905273438	2	560.797872	1119.58119	-0.67152	-0.00037659	0.081014	4.5432E-05	-0.59051	-0.00033115	560.7979621587541	101.06	2.3283	100.29	99.674	102	-0.76401					78	46	2	0	0	0	0.066102	2	9268	9268;9275		109.48	8.3781	1	1988100			22197	35923	18165	18188	24616;24617	24616					0.02618288549274439
KDLVFEQEL	9	Unmodified	_KDLVFEQEL_					0	0	0		tr|A0A7D6ZYN4|A0A7D6ZYN4_9CLOTLacIfamilyDNA-bindingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02970PE=4SV=1	tr|A0A7D6ZYN4|A0A7D6ZYN4_9CLOTLacIfamilyDNA-bindingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02970PE=4SV=1	tr|A0A7D6ZYN4|A0A7D6ZYN4_9CLOTLacIfamilyDNA-bindingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02970PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	560.7979125976562	2	560.797872	1119.58119	-1.2069	-0.00067685	2.9282	0.0016421	1.7212	0.00096525	560.7983679354917	101.63	2.41	100.07	99.592	102	-1.5638					151	45	7	0	0	0	0.075543	1	6983	6983		104.06	5.4274	1	2421700			22198	35923	18165	18188	24618	24618					0.02618288549274439
KDLVFEQEL	9	Unmodified	_KDLVFEQEL_					0	0	0		tr|A0A7D6ZYN4|A0A7D6ZYN4_9CLOTLacIfamilyDNA-bindingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02970PE=4SV=1	tr|A0A7D6ZYN4|A0A7D6ZYN4_9CLOTLacIfamilyDNA-bindingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02970PE=4SV=1	tr|A0A7D6ZYN4|A0A7D6ZYN4_9CLOTLacIfamilyDNA-bindingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02970PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.7979736328125	2	560.797872	1119.58119	1.0498	0.00058871	0.52852	0.00029639	1.5783	0.0008851	560.7970989748085	102.23	2.4606	100.03	99.573	102.03	-2.1994					152	46	6	0	0	0	0.10502	2	9224	9224;9237		95.815	7.6382	1	2187800			22199	35923	18165	18188	24619;24620	24619					0.02618288549274439
KDLVIKVND	9	Unmodified	_KDLVIKVND_					0	0	0			REV__ENSG00000188994|ENST00000369577|ZNF292	REV__ENSG00000188994|ENST00000369577|ZNF292	MULTI-MSMS	OvCa99_classI_Rep5	1	522.307373046875	2	522.308406	1042.60226	-0.85204	-0.00044503	-1.8349	-0.00095837	-2.6869	-0.0014034	522.3073763607588	24.061	0.40049	24.061	23.886	24.287	0					16	7	3	0	0	0	0.38969	1	400	400		52.937	1.6012	1	263100	+		22200	22753	18166	18189	24621	24621					0.08266298648823067
KDLVIKVND	9	Unmodified	_KDLVIKVND_					0	0	0			REV__ENSG00000188994|ENST00000369577|ZNF292	REV__ENSG00000188994|ENST00000369577|ZNF292	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	522.308406	1042.60226	-0.85204	-0.00044503	-1.8349	-0.00095837	-2.6869	-0.0014034	522.3073763607588	24.061	0.40049	24.061	23.886	24.287	0	0	0	NaN	52.937	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263100	+		22201	22753	18166	18189							0.08266298648823067
KDLVIPPAF	9	Unmodified	_KDLVIPPAF_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.793701171875	2	500.29731	998.580068	-1.3789	-0.00068984	-2.9691	-0.0014855	-4.348	-0.0021753	500.29568810943204	85.628	1.5035	83.407	83.035	84.538	-2.2204					49	29	3	0	0	0	0.027462	1	5102	5102		29.15	0	1	406000			22202	5793;36288	18167	18190	24622	24622					0.08072118971040254
KDLVKEKV	8	Unmodified	_KDLVKEKV_					0	0	0		HNRNPM|p.L411Sfs*117|1|0.08|ENSG00000099783|chr19:8485658-8485658|C/-|frameshift_variant;ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM	HNRNPM|p.L411Sfs*117|1|0.08|ENSG00000099783|chr19:8485658-8485658|C/-|frameshift_variant	HNRNPM|p.L411Sfs*117|1|0.08|ENSG00000099783|chr19:8485658-8485658|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.80364990234375	2	479.800217	957.585882	-0.035589	-1.7076E-05	-0.21511	-0.00010321	-0.2507	-0.00012029	479.8000015678844	30.358	0.49503	30.358	30.236	30.731	0					14	9	2	0	0	0	0.028476	1	1157	1157		40.778	0	1	227910			22203	1976	18168	18191	24623	24623					0.1053921748269886
KDLVLKYR	8	Unmodified	_KDLVLKYR_					0	0	0		nc|ENSG00000107554|Q6XZF7-2|DNMBP;DNMBP|p.Q1487Lfs*25|1|0.04|ENSG00000107554|chr10:99879899-99879900|-/A|frameshift_variant;ENSG00000107554|ENST00000324109|DNMBP	nc|ENSG00000107554|Q6XZF7-2|DNMBP	nc|ENSG00000107554|Q6XZF7-2|DNMBP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.2900390625	2	517.821484	1033.62842	-1.0973	-0.00056819	1.4741	0.00076334	0.37688	0.00019516	517.8223781661342	53.398	0.45978	50.19	49.995	50.454	-3.208					15	8	3	0	0	0	0.028476	1	3279	3279		30.504	2.6214	1	59155			22204	756	18169	18192	24624	24624					0.11294612610936383
KDLYMLLL	8	Unmodified	_KDLYMLLL_					0	0	0			REV__tr|A0A553SN20|A0A553SN20_NIACIDUF2157domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23520PE=4SV=1	REV__tr|A0A553SN20|A0A553SN20_NIACIDUF2157domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23520PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	504.79437255859375	2	504.793546	1007.57254	0.445	0.00022464	2.8968	0.0014623	3.3418	0.0016869	504.7948322136319	66.035	1.3924	63.339	62.821	64.213	-2.6958					74	27	4	0	0	0	0.60331	1	5107	5107		63.306	0	1	580190	+		22205	30388	18170	18193	24625	24625					0.06905643379127469
KDLYMLLL	8	Unmodified	_KDLYMLLL_					0	0	0			REV__tr|A0A553SN20|A0A553SN20_NIACIDUF2157domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23520PE=4SV=1	REV__tr|A0A553SN20|A0A553SN20_NIACIDUF2157domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23520PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.7966003417969	2	504.793546	1007.57254	-0.039616	-1.9998E-05	3.1364	0.0015832	3.0968	0.0015632	504.79501702136395	66.917	1.5731	63.427	63.049	64.622	-3.4902					76	31	5	0	0	0	0.39692	1	4900	4900		88.643	0	1	740770	+		22206	30388	18170	18193	24626	24626					0.06905643379127469
KDLYMLLL	8	Unmodified	_KDLYMLLL_					0	0	0			REV__tr|A0A553SN20|A0A553SN20_NIACIDUF2157domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23520PE=4SV=1	REV__tr|A0A553SN20|A0A553SN20_NIACIDUF2157domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23520PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	504.793546	1007.57254	-0.039616	-1.9998E-05	3.1364	0.0015832	3.0968	0.0015632	504.79501702136395	66.917	1.5731	63.427	63.049	64.622	-3.4902	0.044135	0.00015201	NaN	88.643	76	31	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	740770	+		22207	30388	18170	18193							0.06905643379127469
KDLYVGVE	8	Unmodified	_KDLYVGVE_					0	0	0			REV__tr|A0A7D6VYN9|A0A7D6VYN9_9CLOTV-typeATPsynthasealphachainOS=ClostridiumintestinaleOX=36845GN=atpAPE=3SV=1	REV__tr|A0A7D6VYN9|A0A7D6VYN9_9CLOTV-typeATPsynthasealphachainOS=ClostridiumintestinaleOX=36845GN=atpAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	462.32476806640625	2	461.74765	921.480748	-0.94362	-0.00043572	2.4538	0.001133	1.5102	0.00069731	461.7484367452607	82.26	0.84898	79.963	79.434	80.283	-2.2963					28	16	3	0	0	0	0.028476	1	4653	4653		21.96	0	1	39270	+		22208	31824	18171	18194	24627	24627					0.016866762862946416
KDMEGKKL	8	Unmodified	_KDMEGKKL_					0	0	0			REV__tr|A0A7D7A574|A0A7D7A574_9CLOTPhospholipaseCOS=ClostridiumintestinaleOX=36845GN=HZF06_06105PE=4SV=1	REV__tr|A0A7D7A574|A0A7D7A574_9CLOTPhospholipaseCOS=ClostridiumintestinaleOX=36845GN=HZF06_06105PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.5791931152344	2	474.762778	947.511002	0.61987	0.00029429	-0.94345	-0.00044792	-0.32358	-0.00015363	474.762124457371	78.536	1.3686	75.719	75.457	76.826	-2.8165					61	28	3	0	0	0	0.028476	1	6410	6410		17.365	0	1	839430	+		22209	32628	18172	18195	24628	24628					0.03514711679827087
KDMELLDPL	9	Unmodified	_KDMELLDPL_					0	0	0			REV__CNOT2-C3orf19|1|fusion	REV__CNOT2-C3orf19|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.8054809570312	2	537.281	1072.54745	2.2524	0.0012102	-1.5903	-0.00085443	0.66212	0.00035575	537.2789406253555	84.174	1.0854	84.174	83.504	84.589	0					38	25	3	0	0	0	0.027462	1	8809	8809		35.618	10.044	1	405380	+		22210	16154	18173	18196	24629	24629					0.01407543785899179
KDMELLDPL	9	Unmodified	_KDMELLDPL_					0	0	0			REV__CNOT2-C3orf19|1|fusion	REV__CNOT2-C3orf19|1|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	537.281	1072.54745	-2.0167	-0.0010835	-3.993	-0.0021454	-6.0097	-0.0032289	537.279476855558	85.643	1.0903	84.152	83.653	84.743	-1.4906	0.042537	-0.00033047	NaN	52.937	30	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16815	+		22211	16154	18173	18196							0.01407543785899179
KDMELLDPL	9	Unmodified	_KDMELLDPL_					0	0	0			REV__CNOT2-C3orf19|1|fusion	REV__CNOT2-C3orf19|1|fusion	MULTI-MATCH	OvCa9_classI_Rep3	3		2	537.281	1072.54745	0.053268	2.862E-05	-4.0159	-0.0021577	-3.9626	-0.002129	537.2787272074422	86.157	0.40179	83.936	83.785	84.187	-2.2204	-0.17341	-0.00035506	NaN	52.937	17	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38123	+		22212	16154	18173	18196							0.01407543785899179
KDMELLDPL	9	Unmodified	_KDMELLDPL_					0	0	0			REV__CNOT2-C3orf19|1|fusion	REV__CNOT2-C3orf19|1|fusion	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	537.281	1072.54745	-0.049969	-2.6848E-05	-5.0738	-0.0027261	-5.1238	-0.0027529	537.7795450380378	86.804	0.59044	84.177	83.908	84.499	-2.6269	0.066989	-0.0014919	NaN	52.937	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26166	+		22213	16154	18173	18196							0.01407543785899179
KDMLFNQLI	9	Unmodified	_KDMLFNQLI_					0	0	0		SATB1|p.N758Ifs*4|1|0.11|ENSG00000182568|chr3:18349189-18349189|T/-|frameshift_variant;ENSG00000182568|ENST00000338745|SATB1;nc|ENSG00000182568|Q01826-2|SATB1	SATB1|p.N758Ifs*4|1|0.11|ENSG00000182568|chr3:18349189-18349189|T/-|frameshift_variant	SATB1|p.N758Ifs*4|1|0.11|ENSG00000182568|chr3:18349189-18349189|T/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.2998657226562	2	561.30481	1120.59507	1.4041	0.00078811	-0.20774	-0.00011661	1.1963	0.0006715	561.8056345624257	105.65	0.61249	105.65	105.44	106.05	0					19	13	2	0	0	0	0.027462	1	11856	11856		37.812	0	1	680300			22214	8008	18174	18197	24630	24630					0.039592427767274785
KDMPGDVAAQL	11	Unmodified	_KDMPGDVAAQL_					0	0	0			REV__ENSG00000185825|ENST00000345046|BCAP31	REV__ENSG00000185825|ENST00000345046|BCAP31	MULTI-MSMS	OvCa9_classI_Rep3	3	572.7841186523438	2	572.786981	1143.55941	-0.72165	-0.00041335	-2.8455	-0.0016299	-3.5672	-0.0020432	572.7852042394844	102.79	2.8693	101.27	100.58	103.45	-1.5211					127	54	3	0	0	0	0.14191	1	7115	7115		88.177	3.0161	1	1330700	+		22215	22536	18175	18198	24631	24631					-0.006628394709423446
KDMPGDVAAQL	11	Unmodified	_KDMPGDVAAQL_					0	0	0			REV__ENSG00000185825|ENST00000345046|BCAP31	REV__ENSG00000185825|ENST00000345046|BCAP31	MULTI-MATCH	OvCa99_classI_Rep5	1		2	572.786981	1143.55941	2.6079	0.0014938	-3.9309	-0.0022516	-1.323	-0.00075778	572.7844521829506	100.97	0.78908	100.97	100.61	101.4	0	-0.23672	-0.0015993	NaN	88.177	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1330800	+		22216	22536	18175	18198							-0.006628394709423446
KDMTPILVV	9	Unmodified	_KDMTPILVV_					0	0	0		ENST00000261303.12_1_14:90734735-90735799:+|nuORF	ENST00000261303.12_1_14:90734735-90735799:+|nuORF	ENST00000261303.12_1_14:90734735-90735799:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.2981262207031	2	508.296453	1014.57835	-0.66965	-0.00034038	3.8029	0.001933	3.1333	0.0015926	508.29841307258295	39.906	0.91437	36.952	36.665	37.58	-2.9541					37	17	3	0	0	0	0.48324	1	1691	1691		44.117	6.3053	1	227480			22217	9862	18176	18199	24632	24632					0.07164741890801452
KDMVNSSKF	9	Unmodified	_KDMVNSSKF_					0	0	0			REV__tr|A0A7D7A3L8|A0A7D7A3L8_9CLOTIsoleucine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=ileSPE=3SV=1	REV__tr|A0A7D7A3L8|A0A7D7A3L8_9CLOTIsoleucine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=ileSPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3176879882812	2	528.263142	1054.51173	0.59863	0.00031624	-3.2776	-0.0017314	-2.6789	-0.0014152	528.2612506682559	67.09	0.74968	67.09	66.739	67.489	0					43	18	4	0	0	0	0.02744	1	6275	6275		44.377	7.2181	1	2169700	+		22218	32589	18177	18200	24633	24633					-0.013344936711291666
KDMVPWLE	8	Oxidation (M)	_KDM(Oxidation (M))VPWLE_		KDM(1)VPWLE		KDM(99)VPWLE	0	0	1			REV__ENSG00000164151|ENST00000296564|ICE1	REV__ENSG00000164151|ENST00000296564|ICE1	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.3201293945312	2	517.254785	1032.49502	0.96584	0.00049959	3.7581	0.0019439	4.7239	0.0024435	517.256496550775	111.49	1.2342	111.49	111.24	112.48	0					55	26	3	0	0	0	0.028476	1	12726	12726		99.375	22.528	1	1906800	+		22219	20949	18178	18201	24634	24634		488			-0.01992994557053862
KDNAIKKFV	9	Unmodified	_KDNAIKKFV_					0	0	0		ENST00000447425.1_1_7:22813267-22813561:-|nuORF	ENST00000447425.1_1_7:22813267-22813561:-|nuORF	ENST00000447425.1_1_7:22813267-22813561:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8175048828125	2	531.818941	1061.62333	0.089047	4.7357E-05	-3.7428	-0.0019905	-3.6538	-0.0019431	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.64427	1	13844	13844		26.693	3.6504	1	263230			22220	12007	18179	18202	24635	24635					0.09498308748334239
KDNFLKSVL	9	Unmodified	_KDNFLKSVL_					0	0	0		ENST00000493756.1_1_1:40997452-41013129:+|nuORF;ENSG00000117010|ENST00000372699|ZNF684	ENST00000493756.1_1_1:40997452-41013129:+|nuORF	ENST00000493756.1_1_1:40997452-41013129:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	532.3141479492188	2	532.310949	1062.60735	1.8817	0.0010017	0.72436	0.00038559	2.6061	0.0013872	532.3128712590462	117.35	1.4402	117.35	116.95	118.39	0					82	30	5	0	0	0	0.37135	1	13481	13481		54.776	7.119	1	1350500			22221	3230	18180	18203	24636	24636					0.0785460251142922
KDNGCPQMFL	10	Unmodified	_KDNGCPQMFL_					0	0	0		nc|ENSG00000139155|Q9NYB5-4|SLCO1C1;nc|ENSG00000139155|Q9NYB5-2|SLCO1C1;ENSG00000139155|ENST00000266509|SLCO1C1;nc|ENSG00000139155|Q9NYB5-3|SLCO1C1	nc|ENSG00000139155|Q9NYB5-4|SLCO1C1	nc|ENSG00000139155|Q9NYB5-4|SLCO1C1	MULTI-SECPEP	OvCa9_classI_Rep3	3	576.7847290039062	2	576.762452	1151.51035	-1.1847	-0.00068326	-3.4577	-0.0019943	-4.6424	-0.0026775	576.7622487718733	102.6	0.26043	101.08	100.89	101.15	-1.5211					6	4	2	0	0	0	0.026826	1	7063	7063		44.377	18.803	1	7702.8			22222	4748	18181	18204	24637	24637					-0.05934451031544086
KDNHIPSN	8	Unmodified	_KDNHIPSN_					0	0	0			REV__tr|A0A7D6VQU1|A0A7D6VQU1_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22465PE=4SV=1	REV__tr|A0A7D6VQU1|A0A7D6VQU1_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22465PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.7617492675781	2	462.730323	923.446094	-1.2059	-0.00055799	2.2682	0.0010496	1.0624	0.00049159	462.730875270171	80.487	0.1929	77.777	77.665	77.858	-2.7106					6	3	2	0	0	0	0.028476	1	6566	6566		21.96	0	1	19102	+		22223	31358	18182	18205	24638	24638					-0.018691468018232626
KDNLFGIKL	9	Unmodified	_KDNLFGIKL_					0	0	0			REV__ENST00000469698.5_1_17:39981777-39991902:-|nuORF	REV__ENST00000469698.5_1_17:39981777-39991902:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	524.315185546875	2	524.313492	1046.61243	0.99568	0.00052205	0.50599	0.0002653	1.5017	0.00078735	524.3138505577132	122.48	1.3582	121.45	121.16	122.52	-1.0286					84	25	5	0	0	0	0.40818	1	9458	9458		51.193	5.2204	1	461900	+		22224	19757	18183	18206	24639	24639					0.09098906374038052
KDNLPSNKLL	10	Unmodified	_KDNLPSNKLL_					0	0	0		tr|A0A7D7A3Y5|A0A7D7A3Y5_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01355PE=4SV=1	tr|A0A7D7A3Y5|A0A7D7A3Y5_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01355PE=4SV=1	tr|A0A7D7A3Y5|A0A7D7A3Y5_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01355PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	571.3327026367188	2	571.332413	1140.65027	-1.5942	-0.00091083	1.4384	0.00082178	-0.15587	-8.9052E-05	571.333039561483	116.37	1.1872	116.24	115.92	117.11	-0.12869					58	23	4	0	0	0	0.60504	1	11137	11137		41.427	6.2746	1	187230			22225	36132	18184	18207	24640	24640					0.08557372568861865
KDNRIPLL	8	Unmodified	_KDNRIPLL_					0	0	0		nc|ENSG00000153982|Q8N9F7-3|GDPD1;nc|ENSG00000153982|Q8N9F7-2|GDPD1;ENSG00000153982|ENST00000284116|GDPD1	nc|ENSG00000153982|Q8N9F7-3|GDPD1	nc|ENSG00000153982|Q8N9F7-3|GDPD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.78814697265625	2	484.798009	967.581465	-1.7777	-0.00086181	1.6529	0.00080131	-0.12479	-6.0498E-05	484.79850770354665	88.593	0.89801	85.99	85.73	86.628	-2.6027					21	17	2	0	0	0	0.028476	1	7556	7556		17.365	0	1	21155			22226	5705	18185	18208	24641	24641					0.09637753059814713
KDNRRCPLI	9	Unmodified	_KDNRRCPLI_					0	0	0			REV__ENST00000456845.6_1_8:38848603-38848879:-|nuORF	REV__ENST00000456845.6_1_8:38848603-38848879:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	557.8107299804688	2	557.811125	1113.6077	-1.5435	-0.00086096	0.84778	0.0004729	-0.69568	-0.00038806	557.8114782865623	144.9	1.3416	144.68	144.34	145.68	-0.22696					84	26	5	0	0	0	0.50149	1	14633	14633		42.396	4.5846	1	532460	+		22227	26036	18186	18209	24642	24642					0.055436989596273634
KDNRRLRYNKY	11	Unmodified	_KDNRRLRYNKY_					0	0	0			REV__ENSG00000136546|ENST00000643258|SCN7A	REV__ENSG00000136546|ENST00000643258|SCN7A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.28125	3	509.283057	1524.82734	-0.51706	-0.00026333	-0.40558	-0.00020656	-0.92265	-0.00046989	509.28263453670166	62.574	0.97449	59.116	58.815	59.789	-3.4577					23	19	2	0	0	0	0.02625	1	4359	4359		18.531	2.6104	1	37441	+		22228	19393	18187	18210	24643	24643					0.08592221171693382
KDNSIFLLT	9	Unmodified	_KDNSIFLLT_					0	0	0			REV__ENSG00000141446|ENST00000269214|ESCO1	REV__ENSG00000141446|ENST00000269214|ESCO1	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.275146484375	2	525.795132	1049.57571	-1.1871	-0.00062415	-0.11426	-6.0079E-05	-1.3013	-0.00068423	525.7956042066903	94.459	0.70895	92.564	92.255	92.964	-1.8956					20	13	2	0	0	0	0.027295	1	6120	6120		64.207	12.872	1	42368	+		22229	19738	18188	18211	24644	24644					0.05290609757457787
KDNTQGEIL	9	Unmodified	_KDNTQGEIL_					0	0	0			REV__tr|A0A553SH45|A0A553SH45_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_12130PE=3SV=1	REV__tr|A0A553SH45|A0A553SH45_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_12130PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.81646728515625	2	509.264196	1016.51384	-0.078783	-4.0121E-05	1.3874	0.00070656	1.3086	0.00066644	509.26382064000194	75.604	1.0638	72.665	71.921	72.985	-2.9389					40	21	3	0	0	0	0.027425	1	5995	5995		69.628	0	1	273980	+		22230	29772	18189	18212	24645	24645					0.006242583383254896
KDNVFKNL	8	Unmodified	_KDNVFKNL_					0	0	0			REV__tr|A0A7D6ZX58|A0A7D6ZX58_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20895PE=4SV=1	REV__tr|A0A7D6ZX58|A0A7D6ZX58_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20895PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.80975341796875	2	489.274367	976.53418	-0.73786	-0.00036102	-3.5373	-0.0017307	-4.2751	-0.0020917	489.2707358165631	63.711	0.36523	63.711	63.57	63.935	0					14	8	2	0	0	0	0.028476	1	5764	5764		64.207	0	1	276810	+		22231	32316	18190	18213	24646	24646					0.04497473788796924
KDNVFKNL	8	Unmodified	_KDNVFKNL_					0	0	0			REV__tr|A0A7D6ZX58|A0A7D6ZX58_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20895PE=4SV=1	REV__tr|A0A7D6ZX58|A0A7D6ZX58_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20895PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	489.274367	976.53418	0.94376	0.00046176	-9.1048	-0.0044547	-8.161	-0.003993	489.2702631800764	67.219	1.2316	63.729	63.247	64.478	-3.4902	0.0086769	-0.0014508	NaN	64.207	38	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52301	+		22232	32316	18190	18213							0.04497473788796924
KDPGKKDA	8	Unmodified	_KDPGKKDA_					0	0	0		ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11;ANKRD11|p.R1597Lfs*44|1|0.12|ENSG00000167522|chr16:89281752-89281753|-/A|frameshift_variant;ANKRD11|p.H1613Tfs*39|1|0.32|ENSG00000167522|chr16:89281705-89281706|-/GGCACGGGCGTGGAGTGCTGCGAGTCGGCGCAGT|frameshift_variant	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	429.26348876953125	2	429.737617	857.460681	-0.077616	-3.3354E-05	0.2293	9.8541E-05	0.15169	6.5186E-05	429.7375904636734	40.651	0.88765	37.697	37.474	38.362	-2.9541					27	16	2	0	0	0	0.028476	1	1832	1832		37.812	4.9991	1	97728			22233	6795	18191	18214	24647	24647					0.026249253463220157
KDPLLFIQL	9	Unmodified	_KDPLLFIQL_					0	0	0		nc|ENSG00000113073|Q96Q91-4|SLC4A9;nc|ENSG00000113073|Q96Q91-2|SLC4A9;ENSG00000113073|ENST00000506757|SLC4A9;nc|ENSG00000113073|Q96Q91|SLC4A9;SLC4A9|p.A543Pfs*16|1|0.63|ENSG00000113073|chr5:140364528-140364529|-/CCTGCTCTTCTCTTTCAGCAGGTAGGAGA|frameshift_variant	nc|ENSG00000113073|Q96Q91-4|SLC4A9	nc|ENSG00000113073|Q96Q91-4|SLC4A9	MULTI-MSMS	OvCa9_classI_Rep2	2	543.8309326171875	2	543.831517	1085.64848	-1.0706	-0.00058225	1.241	0.00067489	0.17035	9.2641E-05	543.8318598925507	115.73	1.682	115.61	115.24	116.92	-0.11777					70	33	4	0	0	0	0.2422	1	11040	11040		69.628	8.6557	1	205760			22234	2947	18192	18215	24648	24648					0.10908363550902322
KDPLLYTKV	9	Unmodified	_KDPLLYTKV_					0	0	0			REV__ENSG00000102362|ENST00000372989|SYTL4	REV__ENSG00000102362|ENST00000372989|SYTL4	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.8624267578125	2	538.82115	1075.62775	0.58917	0.00031746	-0.13589	-7.3222E-05	0.45328	0.00024423	538.820392077878	133.22	0.48776	132.1	131.78	132.27	-1.1249					19	9	3	0	0	0	0.027462	1	10676	10676		37.812	2.1932	1	40736	+		22235	17551	18193	18216	24649	24649					0.0929577317122039
KDPNIIHLL	9	Unmodified	_KDPNIIHLL_					0	0	0		ENSG00000162733|ENST00000367921|DDR2	ENSG00000162733|ENST00000367921|DDR2	ENSG00000162733|ENST00000367921|DDR2	MULTI-MSMS	OvCa9_classI_Rep3	3	531.81640625	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.61208	1	11376	11376		30.504	0	1	178650			22236	6222	18194	18217	24650	24650					0.09498308748334239
KDPNKRLY	8	Unmodified	_KDPNKRLY_					0	0	0			REV__ZNF26|p.K321Rfs*5|1|0.07|ENSG00000198393|chr12:133010840-133010841|-/GGCC|frameshift_variant	REV__ZNF26|p.K321Rfs*5|1|0.07|ENSG00000198393|chr12:133010840-133010841|-/GGCC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.2940673828125	2	517.293091	1032.57163	-0.88153	-0.00045601	0.32318	0.00016718	-0.55835	-0.00028883	517.2931193992495	52.808	1.4627	49.6	49.196	50.659	-3.208					81	28	4	0	0	0	0.70469	1	3191	3191		42.396	3.1433	1	977110	+		22237	23015	18195	18218	24651	24651					0.05664565054416926
KDPSLTSTLIV	11	Unmodified	_KDPSLTSTLIV_					0	0	0			REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|5|1|sense	REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|5|1|sense	MSMS	OvCa99_classI_Rep5	1	587.3416137695312	2	587.339904	1172.66525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.15	1	97.15	96.65	97.65	0								0	0	0	0.18925	1	10664	10664		46.457	0.48454	1		+		22238	28261	18196	18219	24652	24652					0.08582819646176176
KDPVHTVSLQ	10	Unmodified	_KDPVHTVSLQ_					0	0	0		ENSG00000086200|ENST00000325324|IPO11;nc|ENSG00000086200|Q9UI26-2|IPO11	ENSG00000086200|ENST00000325324|IPO11	ENSG00000086200|ENST00000325324|IPO11	MULTI-MSMS	OvCa99_classI_Rep5	1	562.3129272460938	2	562.308938	1122.60332	2.1988	0.0012364	-0.96815	-0.0005444	1.2307	0.00069201	562.310393803367	111.06	0.97951	111.06	110.63	111.6	0					51	21	3	0	0	0	0.50873	1	12607	12607		53.089	0.15226	1	1146800			22239	1749	18197	18220	24653	24653					0.04692513017721467
KDPVVASLV	9	Unmodified	_KDPVVASLV_					0	0	0			REV__nc|ENSG00000165055|Q6P1Q9-2|METTL2B	REV__nc|ENSG00000165055|Q6P1Q9-2|METTL2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.2117614746094	2	464.279118	926.543683	-0.62562	-0.00029046	-2.8963	-0.0013447	-3.5219	-0.0016351	464.27769408373126	35.076	0.42919	35.076	34.864	35.293	0					14	8	2	0	0	0	0.027462	1	1730	1730		30.504	0	1	820490	+		22240	21051	18198	18221	24654	24654					0.07747242074322003
KDPYATCEIY	10	Unmodified	_KDPYATCEIY_					0	0	0			REV__nc|ENSG00000162643|Q8IWG1-2|DNAI3	REV__nc|ENSG00000162643|Q8IWG1-2|DNAI3	MULTI-SECPEP	OvCa99_classI_Rep5	1	601.334228515625	2	601.773539	1201.53253	2.4871	0.0014967	2.8268	0.0017011	5.3139	0.0031978	601.7749951237829	91.8	0.55001	91.8	91.582	92.132	0					25	12	3	0	0	0	0.027028	1	9896	9896		24.519	11.707	1	542880	+		22241	20759	18199	18222	24655	24655					-0.06017948082126168
KDQDDQHQREI	11	Unmodified	_KDQDDQHQREI_					0	0	0			REV__ENSG00000147118|ENST00000376943|ZNF182	REV__ENSG00000147118|ENST00000376943|ZNF182	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.785400390625	3	471.223533	1410.64877	2.858	0.0013468	1.0454	0.00049263	3.9034	0.0018394	471.22403899032275	96.379	0.28931	96.379	96.253	96.543	0					10	6	2	0	0	0	0.026033	1	10568	10568		17.167	5.2344	1	175870	+		22242	20044	18200	18223	24656	24656					-0.04012913257861328
KDQKTQRR	8	Unmodified	_KDQKTQRR_					0	0	0		L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|29|1|sense	L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|29|1|sense	L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|29|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.275634765625	2	530.304521	1058.59449	-0.33876	-0.00017965	3.1662	0.001679	2.8274	0.0014994	530.306286724787	42.731	0.6877	42.731	42.539	43.227	0					27	15	2	0	0	0	0.028476	1	2825	2825		27.882	3.6795	1	334160			22243	14731	18201	18224	24657	24657					0.06753584171906368
KDQLSPRAD	9	Unmodified	_KDQLSPRAD_					0	0	0		ENST00000554278.5_2_14:67953817-68000379:-|nuORF	ENST00000554278.5_2_14:67953817-68000379:-|nuORF	ENST00000554278.5_2_14:67953817-68000379:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.8112182617188	2	515.269813	1028.52507	-0.78995	-0.00040704	-2.9773	-0.0015341	-3.7673	-0.0019412	515.7709577950751	55.804	0.84133	53	52.731	53.572	-2.804					20	16	2	0	0	0	0.027461	1	3970	3970		32.812	0	1	37516			22244	13634	18202	18225	24658	24658					0.011950804324669662
KDQVKQLLV	9	Unmodified	_KDQVKQLLV_					0	0	0			REV__tr|A0A7D6VVS5|A0A7D6VVS5_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13610PE=4SV=1	REV__tr|A0A7D6VVS5|A0A7D6VVS5_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13610PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.8154296875	2	535.832049	1069.64954	1.7994	0.00096417	-0.6196	-0.000332	1.1798	0.00063217	535.8315791505393	116.66	0.94875	116.66	116.28	117.23	0					48	20	4	0	0	0	0.027462	1	13346	13346		39.253	0	1	1340000	+		22245	31734	18203	18226	24659	24659					0.11750577919792704
KDQYHAYF	8	Unmodified	_KDQYHAYF_					0	0	0			REV__tr|A0A553SR66|A0A553SR66_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_00490PE=4SV=1	REV__tr|A0A553SR66|A0A553SR66_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_00490PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3071899414062	2	536.248349	1070.48214	1.3069	0.00070083	-1.2791	-0.0006859	0.027837	1.4927E-05	536.2480438638291	74.688	0.20368	74.688	74.557	74.761	0					6	4	2	0	0	0	0.028476	1	7396	7396		26.796	1.3459	1	61910	+		22246	30697	18204	18227	24660	24660					-0.050276896249670244
KDREIYEAL	9	Unmodified	_KDREIYEAL_					0	0	0		tr|A0A7D6ZHB1|A0A7D6ZHB1_9CLOTDihydropyrimidinaseOS=ClostridiumintestinaleOX=36845GN=hydAPE=3SV=1	tr|A0A7D6ZHB1|A0A7D6ZHB1_9CLOTDihydropyrimidinaseOS=ClostridiumintestinaleOX=36845GN=hydAPE=3SV=1	tr|A0A7D6ZHB1|A0A7D6ZHB1_9CLOTDihydropyrimidinaseOS=ClostridiumintestinaleOX=36845GN=hydAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	569.7759399414062	2	568.800946	1135.58734	-0.22044	-0.00012539	3.016	0.0017155	2.7956	0.0015901	569.3056069334848	93.024	0.6065	91.856	91.55	92.157	-1.168					18	11	2	0	0	0	0.027461	1	8311	8311		49.442	0	1	39046			22247	35569	18205	18228	24661	24661					0.02496806780800398
KDRFLRRA	8	Unmodified	_KDRFLRRA_					0	0	0			REV__ENSG00000187240|ENST00000375735|DYNC2H1	REV__ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.2779541015625	2	531.319974	1060.6254	1.5973	0.00084868	2.8115	0.0014938	4.4088	0.0023425	531.3213881272899	127.22	0.94498	127.22	127.01	127.95	0					33	20	2	0	0	0	0.028476	1	14742	14742		21.96	3.6355	1	732010	+		22248	22636	18206	18229	24662	24662					0.09750782276819336
KDRFLVNL	8	Unmodified	_KDRFLVNL_					0	0	0		CON__REFSEQ:XP_585019	CON__REFSEQ:XP_585019	CON__REFSEQ:XP_585019	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.704345703125	2	502.798009	1003.58147	-0.26384	-0.00013266	0.015223	7.6539E-06	-0.24862	-0.00012501	502.7978603053952	56.343	0.60934	56.343	56.135	56.744	0					31	14	3	0	0	0	0.028476	1	4640	4640		39.253	0	1	1235300		+	22249	668	18207	18230	24663	24663					0.07981753059812036
KDRGMVQVQ	9	Unmodified	_KDRGMVQVQ_					0	0	0		ENSG00000156050|ENST00000286544|FAM161B;nc|ENSG00000156050|Q96MY7-2|FAM161B	ENSG00000156050|ENST00000286544|FAM161B	ENSG00000156050|ENST00000286544|FAM161B	MULTI-SECPEP	OvCa9_classI_Rep2	2	530.2936401367188	2	530.782033	1059.54951	-0.58232	-0.00030909	-4.0536	-0.0021516	-4.6359	-0.0024607	530.7796619085055	72.385	0.26051	69.877	69.799	70.06	-2.5071					6	4	2	0	0	0	0.027433	1	5869	5869		54.776	10.66	1	10942			22250	5818	18208	18231	24664	24664					0.022120173143548527
KDRKEKEAP	9	Unmodified	_KDRKEKEAP_					0	0	0			REV__ENST00000484476.5_1_1:25889538-25893480:+|nuORF	REV__ENST00000484476.5_1_1:25889538-25893480:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.8063354492188	2	550.806562	1099.59857	-1.5163	-0.00083516	1.2958	0.00071372	-0.22048	-0.00012144	550.8071596293769	50.301	1.6918	47.159	46.663	48.355	-3.1416					106	32	4	0	0	0	0.37135	1	2921	2921		54.776	0	1	991970	+		22251	26549	18209	18232	24665	24665					0.052756288749378655
KDRKELFY	8	Unmodified	_KDRKELFY_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.2805786132812	2	549.800749	1097.58694	-0.3896	-0.0002142	3.8012	0.0020899	3.4116	0.0018757	549.8025305013158	121.65	0.8734	120.31	120.06	120.93	-1.3479					20	16	2	0	0	0	0.028476	1	11482	11482		19.36	1.995	1	46892	+		22252	28942	18210	18233	24666	24666					0.04205431851596586
KDRKGFHDL	9	Unmodified	_KDRKGFHDL_					0	0	0			REV__tr|A0A553SL11|A0A553SL11_NIACITyrosinerecombinaseXerDOS=NialliacirculansOX=1397GN=xerDPE=3SV=1	REV__tr|A0A553SL11|A0A553SL11_NIACITyrosinerecombinaseXerDOS=NialliacirculansOX=1397GN=xerDPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.818115234375	2	558.301447	1114.58834	2.1677	0.0012102	0.040506	2.2614E-05	2.2082	0.0012329	558.3012842287792	77.877	0.54475	77.877	77.629	78.174	0					19	12	2	0	0	0	0.027462	1	7844	7844		15.642	0.77694	1	491520	+		22253	30173	18211	18234	24667	24667					0.03563065940375054
KDRLAKFMKTE	11	Unmodified	_KDRLAKFMKTE_					0	0	0		SPTLC1|p.E149K|1|0.14|ENSG00000090054|chr9:92068081-92068081|C/T|missense_variant	SPTLC1|p.E149K|1|0.14|ENSG00000090054|chr9:92068081-92068081|C/T|missense_variant	SPTLC1|p.E149K|1|0.14|ENSG00000090054|chr9:92068081-92068081|C/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.9244384765625	3	456.255228	1365.74386	0.22953	0.00010472	1.2293	0.00056089	1.4589	0.00066561	456.2561837706304	31.633	0.19833	31.633	31.46	31.658	0					5	3	2	0	0	0	0.026068	1	1306	1306		11.932	0.47776	1	16495			22254	32919	18212	18235	24668	24668					0.07561348679587354
KDRLEEQESR	10	Unmodified	_KDRLEEQESR_					0	0	0			REV__ENSG00000129347|ENST00000312962|KRI1	REV__ENSG00000129347|ENST00000312962|KRI1	MULTI-MSMS	OvCa9_classI_Rep4_	4	645.3265991210938	2	645.325847	1288.63714	-0.5958	-0.00038449	1.4319	0.00092403	0.83608	0.00053954	645.3267068965904	99.968	2.6534	97.643	97.263	99.917	-2.3253					142	52	6	0	0	0	0.55359	1	8936	8936		47.657	1.6851	1	2886900	+		22255	18894	18213	18236	24669	24669					0.004368897187987386
KDRLKLVV	8	Unmodified	_KDRLKLVV_					0	0	0			REV__OR10G4|p.A297V|1|0.44|ENSG00000254737|chr11:124016464-124016464|C/T|missense_variant	REV__OR10G4|p.A297V|1|0.44|ENSG00000254737|chr11:124016464-124016464|C/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.2927551269531	2	485.824027	969.633501	-0.028223	-1.3712E-05	-0.37578	-0.00018256	-0.404	-0.00019627	485.8236736120814	83.503	0.97484	80.84	80.388	81.363	-2.6629					36	19	3	0	0	0	0.028476	1	6892	6892		12.207	0	1	60405	+		22256	29264	18214	18237	24670	24670					0.14746916473552574
KDRLLGAIPP	10	Unmodified	_KDRLLGAIPP_					0	0	0			REV__ENSG00000112394|ENST00000368851|SLC16A10	REV__ENSG00000112394|ENST00000368851|SLC16A10	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.3246459960938	2	540.332216	1078.64988	2.8234	0.0015256	-1.6578	-0.00089577	1.1656	0.0006298	540.3326506853223	96.38	0.12173	96.38	96.296	96.418	0					4	2	2	0	0	0	0.026956	1	10548	10548		19.997	0	1	56393	+		22257	18099	18215	18238	24671	24671					0.11369997639667417
KDRLPLPL	8	Unmodified	_KDRLPLPL_					0	0	0		AFF1|p.K1086Sfs*71|1|0.1|ENSG00000172493|chr4:87132374-87132375|AA/-|frameshift_variant;nc|ENSG00000172493|P51825|AFF1;nc|ENSG00000172493|P51825-3|AFF1;ENSG00000172493|ENST00000395146|AFF1;ENST00000503369.1_1_4:88036121-88046296:+|nuORF	AFF1|p.K1086Sfs*71|1|0.1|ENSG00000172493|chr4:87132374-87132375|AA/-|frameshift_variant	AFF1|p.K1086Sfs*71|1|0.1|ENSG00000172493|chr4:87132374-87132375|AA/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.5788879394531	2	476.302927	950.591301	0.057928	2.7591E-05	-0.45886	-0.00021855	-0.40093	-0.00019096	476.30249731924687	79.477	0.9575	76.726	76.418	77.376	-2.7514					28	19	2	0	0	0	0.028476	1	6422	6422		12.959	0	1	46528			22258	46	18216	18239	24672	24672					0.11402941065182404
KDRLQADL	8	Unmodified	_KDRLQADL_					0	0	0			REV__ENSG00000172073|ENST00000303254|TEX37	REV__ENSG00000172073|ENST00000303254|TEX37	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.81201171875	2	479.769448	957.524344	0.20915	0.00010034	-0.085494	-4.1018E-05	0.12366	5.9327E-05	479.7691296315279	59.359	0.98318	55.967	55.755	56.738	-3.392					35	19	3	0	0	0	0.028476	1	4023	4023		35.618	2.1027	1	94412	+		22259	21674	18217	18240	24673	24673					0.04388285783409174
KDRLQADL	8	Unmodified	_KDRLQADL_					0	0	0			REV__ENSG00000172073|ENST00000303254|TEX37	REV__ENSG00000172073|ENST00000303254|TEX37	MULTI-MATCH	OvCa99_classI_Rep5	1		2	479.769448	957.524344	-0.31631	-0.00015175	0.37484	0.00017983	0.05853	2.8081E-05	479.7694682788797	55.732	0.53174	55.732	55.52	56.052	0	-0.11748	0.00010773	NaN	35.618	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218030	+		22260	21674	18217	18240							0.04388285783409174
KDRLQFLK	8	Unmodified	_KDRLQFLK_					0	0	0		ENST00000529805.1_1_11:105867080-105880474:-|nuORF;ENSG00000170903|ENST00000301919|MSANTD4	ENST00000529805.1_1_11:105867080-105880474:-|nuORF	ENST00000529805.1_1_11:105867080-105880474:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.2892456054688	2	524.319109	1046.62366	-1.5686	-0.00082247	1.3465	0.00070597	-0.22219	-0.0001165	524.3196469981714	45.155	1.0928	42.117	41.765	42.858	-3.0385					34	20	2	0	0	0	0.028476	1	2253	2253		15.642	0.77694	1	108630			22261	7150	18218	18241	24674	24674					0.10221728468150104
KDRLQFLK	8	Unmodified	_KDRLQFLK_					0	0	0		ENST00000529805.1_1_11:105867080-105880474:-|nuORF;ENSG00000170903|ENST00000301919|MSANTD4	ENST00000529805.1_1_11:105867080-105880474:-|nuORF	ENST00000529805.1_1_11:105867080-105880474:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	524.319109	1046.62366	0.17113	8.9727E-05	-0.43143	-0.00022621	-0.2603	-0.00013648	524.3186213638828	44.883	0.7463	42.174	42	42.747	-2.7097	0.028507	-0.00082012	NaN	15.642	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50512			22262	7150	18218	18241							0.10221728468150104
KDRLSPEKFY	10	Unmodified	_KDRLSPEKFY_					0	0	0			REV__ENSG00000163535|ENST00000357799|SGO2	REV__ENSG00000163535|ENST00000357799|SGO2	MULTI-MSMS	OvCa9_classI_Rep4_	4	428.22998046875	3	428.231189	1281.67174	0.39486	0.00016909	-3.581	-0.0015335	-3.1861	-0.0013644	428.22952921337776	21.888	0.80917	20.549	20.321	21.13	-1.3386					36	15	3	0	0	0	0.71173	1	226	226		21.78	0	1	110480	+		22263	20849	18219	18242	24675	24675					0.04216757597555443
KDRLTLVTV	9	Unmodified	_KDRLTLVTV_					0	0	0			REV__ENST00000420734.1_1_1:87510839-87511187:-|nuORF	REV__ENST00000420734.1_1_1:87510839-87511187:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	522.8253784179688	2	522.824224	1043.63389	-0.61715	-0.00032266	-0.12179	-6.3677E-05	-0.73894	-0.00038634	522.8241473129543	81.355	1.6752	79.033	78.337	80.012	-2.3226					150	32	6	0	0	0	0.2422	1	4495	4495		69.628	0	1	2046900	+		22264	25595	18220	18243	24676	24676					0.1138229140274234
KDRLVDEKIK	10	Unmodified	_KDRLVDEKIK_					0	0	0		tr|A0A553SIJ7|A0A553SIJ7_NIACISGNHhydrolase-typeesterasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14985PE=4SV=1	tr|A0A553SIJ7|A0A553SIJ7_NIACISGNHhydrolase-typeesterasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14985PE=4SV=1	tr|A0A553SIJ7|A0A553SIJ7_NIACISGNHhydrolase-typeesterasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14985PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	416.2306213378906	3	415.250472	1242.72959	0.60409	0.00025085	-0.4763	-0.00019779	0.12779	5.3064E-05	415.250039936272	51.153	0.3387	51.153	51.036	51.374	0					11	7	2	0	0	0	0.027006	1	3924	3924		18.531	0	1	114500			22265	33389	18221	18244	24677	24677					0.11793019522974646
KDRLVDEKIK	10	Unmodified	_KDRLVDEKIK_					0	0	0		tr|A0A553SIJ7|A0A553SIJ7_NIACISGNHhydrolase-typeesterasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14985PE=4SV=1	tr|A0A553SIJ7|A0A553SIJ7_NIACISGNHhydrolase-typeesterasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14985PE=4SV=1	tr|A0A553SIJ7|A0A553SIJ7_NIACISGNHhydrolase-typeesterasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14985PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	415.250472	1242.72959	-0.80918	-0.00033601	0.29266	0.00012153	-0.51652	-0.00021449	415.2504542982788	54.661	0.8725	51.414	51.183	52.055	-3.2474	0.13043	6.0883E-05	NaN	18.531	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76795			22266	33389	18221	18244							0.11793019522974646
KDRNNTEV	8	Unmodified	_KDRNNTEV_					0	0	0		RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.T5031Rfs*29|1|0.06|ENSG00000173821|chr17:80389261-80389262|-/TCGG|frameshift_variant;RNF213|p.G5057Vfs*8|1|0.18|ENSG00000173821|chr17:80389340-80389340|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.N2986Tfs*32|1|0.9|ENSG00000173821|chr17:80347289-80347289|G/-|frameshift_variant;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.27685546875	2	488.246338	974.478122	-0.63325	-0.00030918	0.60921	0.00029745	-0.024039	-1.1737E-05	488.2465085266145	33.705	0.48395	33.705	33.533	34.017	0					12	9	2	0	0	0	0.028476	1	1598	1598		10.265	0	1	96419			22267	7416;32788	18222	18245	24678	24678					-0.010137791186593859
KDRTISYG	8	Unmodified	_KDRTISYG_					0	0	0			REV__nc|ENSG00000165185|Q8N8K9-2|KIAA1958	REV__nc|ENSG00000165185|Q8N8K9-2|KIAA1958	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.73193359375	2	470.248349	938.482145	-1.0342	-0.00048634	1.6032	0.00075389	0.56896	0.00026755	470.2490162233122	70.056	0.64802	70.056	69.84	70.488	0					18	15	2	0	0	0	0.028476	1	6744	6744		24.203	0	1	310470	+		22268	28975	18223	18246	24679	24679					0.01044310375061741
KDRTRNVLE	9	Unmodified	_KDRTRNVLE_					0	0	0		DHX16|p.C734Sfs*37|1|0.06|ENSG00000204560|chr6:30656707-30656707|C/-|frameshift_variant;DHX16|p.E919Rfs*60|1|0.09|ENSG00000204560|chr6:30655243-30655244|-/G|frameshift_variant;ENSG00000204560|ENST00000376442|DHX16	DHX16|p.C734Sfs*37|1|0.06|ENSG00000204560|chr6:30656707-30656707|C/-|frameshift_variant	DHX16|p.C734Sfs*37|1|0.06|ENSG00000204560|chr6:30656707-30656707|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.78955078125	2	565.817461	1129.62037	2.0075	0.0011359	-3.3475	-0.0018941	-1.34	-0.00075818	565.8139582363858	127.79	0.87556	127.79	127.45	128.32	0					28	18	2	0	0	0	0.027453	1	14771	14771		37.812	6.2817	1	134040			22269	735	18224	18247	24680	24680					0.0607443362353024
KDRTVITIL	9	Unmodified	_KDRTVITIL_					0	0	0			REV__ENSG00000188324|ENST00000358433|OR6C6	REV__ENSG00000188324|ENST00000358433|OR6C6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.30615234375	2	529.832049	1057.64954	-0.59186	-0.00031359	-2.0404	-0.001081	-2.6322	-0.0013946	529.8311305613169	59.566	1.0818	56.174	56.002	57.084	-3.392					37	21	2	0	0	0	0.027353	1	3975	3975		62.107	10.915	1	98174	+		22270	22706	18225	18248	24681	24681					0.12302577919808755
KDRVILAL	8	Unmodified	_KDRVILAL_					0	0	0		nc|ENSG00000152969|Q96N16|JAKMIP1;ENSG00000152969|ENST00000409021|JAKMIP1;nc|ENSG00000152969|Q96N16-6|JAKMIP1;nc|ENSG00000152969|Q96N16-7|JAKMIP1;nc|ENSG00000152969|Q96N16-5|JAKMIP1;nc|ENSG00000152969|Q96N16-3|JAKMIP1;JAKMIP1|p.R424Sfs*9|1|0.04|ENSG00000152969|chr4:6078969-6078970|-/GAATA|frameshift_variant;nc|ENSG00000152969|Q96N16-4|JAKMIP1	nc|ENSG00000152969|Q96N16|JAKMIP1	nc|ENSG00000152969|Q96N16|JAKMIP1	MULTI-SECPEP	OvCa9_classI_Rep3	3	464.279296875	2	464.302927	926.591301	-1.1095	-0.00051515	0.3948	0.0001833	-0.71471	-0.00033184	464.30440589276225	83.448	0.51669	81.187	80.917	81.434	-2.261					12	10	2	0	0	0	0.028476	1	4763	4763		26.796	0	1	17831			22271	5652	18226	18249	24682	24682					0.125069410651804
KDRVILQLE	9	Unmodified	_KDRVILQLE_					0	0	0		tr|A0A7D6ZT99|A0A7D6ZT99_9CLOTRibosomematurationfactorRimMOS=ClostridiumintestinaleOX=36845GN=rimMPE=3SV=1	tr|A0A7D6ZT99|A0A7D6ZT99_9CLOTRibosomematurationfactorRimMOS=ClostridiumintestinaleOX=36845GN=rimMPE=3SV=1	tr|A0A7D6ZT99|A0A7D6ZT99_9CLOTRibosomematurationfactorRimMOS=ClostridiumintestinaleOX=36845GN=rimMPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.3257446289062	2	557.334956	1112.65536	-0.0081297	-4.531E-06	2.9208	0.0016278	2.9126	0.0016233	557.3364295804334	58.859	0.31504	58.859	58.696	59.011	0					12	7	2	0	0	0	0.027462	1	5032	5032		24.519	0	1	372190			22272	35750	18227	18250	24683	24683					0.10353676431486747
KDRVLMHRL	9	Unmodified	_KDRVLMHRL_					0	0	0		nc|ENSG00000198171|Q96HY6-2|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.3311767578125	2	584.342592	1166.67063	1.7593	0.001028	3.0293	0.0017701	4.7886	0.0027982	584.3440786090656	112.86	0.22639	112.86	112.79	113.02	0					5	4	2	0	0	0	0.027462	1	12874	12874		27.882	0	1	320310			22273	15255	18228	18251	24684	24684					0.0939626474769284
KDSAAITQNI	10	Unmodified	_KDSAAITQNI_					0	0	0		tr|A0A553SF34|A0A553SF34_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_08150PE=3SV=1	tr|A0A553SF34|A0A553SF34_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_08150PE=3SV=1	tr|A0A553SF34|A0A553SF34_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_08150PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.765869140625	2	530.785296	1059.55604	0.30482	0.00016179	-0.94261	-0.00050032	-0.63779	-0.00033853	530.7850894711481	66.733	0.64828	66.733	66.328	66.977	0					20	15	2	0	0	0	0.026867	1	6164	6164		28.081	2.0181	1	441740			22274	32986	18229	18252	24685	24685					0.02864233746709033
KDSFENLIT	9	Unmodified	_KDSFENLIT_					0	0	0			REV__tr|A0A7D6VSX7|A0A7D6VSX7_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06930PE=3SV=1	REV__tr|A0A7D6VSX7|A0A7D6VSX7_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06930PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.791748046875	2	533.774396	1065.53424	1.3351	0.00071263	0.6601	0.00035235	1.9952	0.001065	533.7746418503352	83.543	1.0546	83.543	83.249	84.303	0					44	24	3	0	0	0	0.027426	1	8734	8734		66.429	0	1	1272400	+		22275	31552	18230	18253	24686	24686					0.004094289981367183
KDSGIIATI	9	Unmodified	_KDSGIIATI_					0	0	0		ENSG00000115183|ENST00000263635|TANC1;TANC1|p.T1589Ifs*85|1|0.16|ENSG00000115183|chr2:159230192-159230192|C/-|frameshift_variant	ENSG00000115183|ENST00000263635|TANC1	ENSG00000115183|ENST00000263635|TANC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.2858581542969	2	459.26875	916.522947	-0.15373	-7.0606E-05	1.2186	0.00055969	1.0649	0.00048908	459.26921030003484	65.061	0.72617	61.576	61.26	61.987	-3.4854					22	14	2	0	0	0	0.027462	1	4685	4685		25.574	4.6271	1	52065			22276	3067	18231	18254	24687	24687					0.06134651694674176
KDSGIIATI	9	Unmodified	_KDSGIIATI_					0	0	0		ENSG00000115183|ENST00000263635|TANC1;TANC1|p.T1589Ifs*85|1|0.16|ENSG00000115183|chr2:159230192-159230192|C/-|frameshift_variant	ENSG00000115183|ENST00000263635|TANC1	ENSG00000115183|ENST00000263635|TANC1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	459.26875	916.522947	-0.63296	-0.0002907	0.70318	0.00032295	0.070221	3.225E-05	459.2689657016532	61.55	0.2909	61.55	61.374	61.665	0	-0.012577	-0.00031937	NaN	32.812	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218710			22277	3067	18231	18254							0.06134651694674176
KDSGPQAIGLL	11	Unmodified	_KDSGPQAIGLL_					0	0	0			REV__nc|ENSG00000125618|Q06710-5|PAX8	REV__nc|ENSG00000125618|Q06710-5|PAX8	MULTI-SECPEP	OvCa9_classI_Rep3	3	550.3284912109375	2	549.811313	1097.60807	-1.5206	-0.00083604	4.125	0.002268	2.6044	0.0014319	549.8114201967965	84.165	0.70193	81.904	81.655	82.357	-2.261					36	14	4	0	0	0	0.025612	1	4913	4913		36.318	12.115	1	130080	+		22278	18732	18232	18255	24688	24688					0.06317397160455585
KDSGPQAIGLL	11	Unmodified	_KDSGPQAIGLL_					0	0	0			REV__nc|ENSG00000125618|Q06710-5|PAX8	REV__nc|ENSG00000125618|Q06710-5|PAX8	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	549.811313	1097.60807	0.65741	0.00036145	1.7564	0.0009657	2.4138	0.0013271	549.8105130652428	84.474	0.55638	81.811	81.594	82.15	-2.6629	-0.046649	-0.0012614	NaN	36.318	32	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111110	+		22279	18732	18232	18255							0.06317397160455585
KDSGVKEDEL	10	Unmodified	_KDSGVKEDEL_					0	0	0		nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	nc|ENSG00000198589|P50851-2|LRBA	nc|ENSG00000198589|P50851-2|LRBA	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.8175659179688	2	560.280043	1118.54553	3.1406	0.0017596	-3.5021	-0.0019622	-0.36154	-0.00020256	560.2779754951107	94.368	0.76718	94.368	94.094	94.861	0					21	17	2	0	0	0	0.02659	1	10288	10288		63.426	6.9927	1	298600			22280	8832	18233	18256	24689	24689					-0.0089979369838602
KDSILVKNR	9	Unmodified	_KDSILVKNR_					0	0	0		tr|A0A553SNS8|A0A553SNS8_NIACIAcyl-CoA--6-aminopenicillanicacidacyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_25015PE=4SV=1	tr|A0A553SNS8|A0A553SNS8_NIACIAcyl-CoA--6-aminopenicillanicacidacyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_25015PE=4SV=1	tr|A0A553SNS8|A0A553SNS8_NIACIAcyl-CoA--6-aminopenicillanicacidacyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_25015PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.828369140625	2	536.827298	1071.64004	-0.56521	-0.00030342	-0.33523	-0.00017996	-0.90043	-0.00048338	536.827110025536	66.307	1.2715	66.307	65.984	67.255	0					80	31	5	0	0	0	0.34132	1	6125	6125		58.23	1.7961	1	21245000			22281	33956	18234	18257	24690	24690					0.10708809634274985
KDSIRRAKTF	10	Unmodified	_KDSIRRAKTF_					0	0	0		tr|A0A7D6ZZN2|A0A7D6ZZN2_9CLOTDecarboxylating6-phosphogluconatedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=gndPE=3SV=1	tr|A0A7D6ZZN2|A0A7D6ZZN2_9CLOTDecarboxylating6-phosphogluconatedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=gndPE=3SV=1	tr|A0A7D6ZZN2|A0A7D6ZZN2_9CLOTDecarboxylating6-phosphogluconatedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=gndPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3548583984375	2	611.356754	1220.69895	-1.5159	-0.00092675	0.36465	0.00022293	-1.1512	-0.00070382	611.3567832501896	147.85	3.7824	146.41	144.39	148.17	-1.4351					181	75	4	0	0	0	0.74374	1	14512	14512		25.574	4.6271	1	164640			22282	35968	18235	18258	24691	24691					0.09743285928584555
KDSKERLVL	9	Unmodified	_KDSKERLVL_					0	0	0		ENST00000502774.1_1_4:154579740-154580577:+|nuORF	ENST00000502774.1_1_4:154579740-154580577:+|nuORF	ENST00000502774.1_1_4:154579740-154580577:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7969360351562	2	544.327131	1086.63971	0.54944	0.00029907	-1.0196	-0.000555	-0.47017	-0.00025593	544.3270096402706	66.879	0.36659	66.879	66.531	66.898	0					9	8	2	0	0	0	0.027462	1	6210	6210		15.642	0	1	716460			22283	12856	18236	18259	24692	24692					0.09985389914413645
KDSLLLII	8	Unmodified	_KDSLLLII_					0	0	0			REV__ENSG00000172167|ENST00000305949|MTBP	REV__ENSG00000172167|ENST00000305949|MTBP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.23187255859375	2	457.799686	913.584819	0.28591	0.00013089	0.21297	9.7499E-05	0.49888	0.00022839	457.7995585649758	112.73	0.59252	111.22	111.1	111.69	-1.5111					15	11	2	0	0	0	0.028476	1	10414	10414		19.36	0	1	12791	+		22284	21679	18237	18260	24693	24693					0.12457003113809151
KDSNLDWFA	9	Unmodified	_KDSNLDWFA_					0	0	0			REV__ITFG1|p.G54W|1|0.25|ENSG00000129636|chr16:47460886-47460886|C/A|missense_variant	REV__ITFG1|p.G54W|1|0.25|ENSG00000129636|chr16:47460886-47460886|C/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	547.7969360351562	2	548.258914	1094.50327	-0.95737	-0.00052489	3.7943	0.0020803	2.8369	0.0015554	548.2609753239684	89.464	1.3103	87.354	86.819	88.129	-2.1098					48	25	3	0	0	0	0.027462	1	5580	5580		16.473	3.514	1	76078	+		22285	28317	18238	18261	24694	24694					-0.0401972431611739
KDSRLKKI	8	Unmodified	_KDSRLKKI_					0	0	0		tr|A0A7D6W020|A0A7D6W020_9CLOTAminopeptidasePfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21830PE=3SV=1	tr|A0A7D6W020|A0A7D6W020_9CLOTAminopeptidasePfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21830PE=3SV=1	tr|A0A7D6W020|A0A7D6W020_9CLOTAminopeptidasePfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21830PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.2961730957031	2	494.319109	986.623664	1.6891	0.00083494	4.2417	0.0020968	5.9308	0.0029317	494.3209621739476	87.625	0.45947	87.625	87.378	87.838	0					16	10	2	0	0	0	0.028476	1	9258	9258		30.504	8.5438	1	192340			22286	35369	18239	18262	24695	24695					0.12981728468184883
KDSSASPLQL	10	Unmodified	_KDSSASPLQL_					0	0	0		ENST00000360507.9_1_2:220040976-220041644:-|nuORF	ENST00000360507.9_1_2:220040976-220041644:-|nuORF	ENST00000360507.9_1_2:220040976-220041644:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	523.2802734375	2	523.279846	1044.54514	-0.92679	-0.00048497	0.052482	2.7463E-05	-0.87431	-0.00045751	523.2797305560564	63.725	0.83869	63.725	63.414	64.253	0					38	20	3	0	0	0	0.11648	1	5747	5747		109.44	10.857	1	2994300			22287	10774	18240	18263	24696	24696					0.02464831372435583
KDSTLIMQL	9	Oxidation (M)	_KDSTLIM(Oxidation (M))QL_		KDSTLIM(1)QL		KDSTLIM(80)QL	0	0	1		ENSG00000108953|ENST00000264335|YWHAE;nc|ENSG00000108953|P62258-2|YWHAE;YWHAE-SLC43A2|1|fusion;YWHAB|p.R224W|1|0.06|ENSG00000166913|chr20:44906082-44906082|A/T|missense_variant;ENST00000399764.3_1_9:34922183-34922564:-|nuORF;nc|ENSG00000175793|P31947-2|SFN;ENSG00000175793|ENST00000339276|SFN;NEO1-YWHAE|1|fusion;ENSG00000170027|ENST00000307630|YWHAG;ENSG00000134308|ENST00000238081|YWHAQ;ENST00000479421.5_2_20:43531717-43535076:+|nuORF;nc|ENSG00000164924|P63104-2|YWHAZ;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB;ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF	ENSG00000108953|ENST00000264335|YWHAE;NEO1-YWHAE|1|fusion;ENSG00000170027|ENST00000307630|YWHAG;ENSG00000134308|ENST00000238081|YWHAQ;ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.7874145507812	2	532.78645	1063.55835	-2.9834	-0.0015895	3.1128	0.0016585	0.12937	6.8928E-05	532.7877329210949	88.503	1.3035	85.901	85.228	86.532	-2.6027					69	25	4	0	0	0	0.17606	2	7555	7555;7568		80.455	10.827	1	445220			22288	3868;2689;15425;7066;4278	18241	18264	24697;24698	24697		87			0.029109461601592557
KDSTLIMQL	9	Oxidation (M)	_KDSTLIM(Oxidation (M))QL_					0	0	1		ENSG00000108953|ENST00000264335|YWHAE;nc|ENSG00000108953|P62258-2|YWHAE;YWHAE-SLC43A2|1|fusion;YWHAB|p.R224W|1|0.06|ENSG00000166913|chr20:44906082-44906082|A/T|missense_variant;ENST00000399764.3_1_9:34922183-34922564:-|nuORF;nc|ENSG00000175793|P31947-2|SFN;ENSG00000175793|ENST00000339276|SFN;NEO1-YWHAE|1|fusion;ENSG00000170027|ENST00000307630|YWHAG;ENSG00000134308|ENST00000238081|YWHAQ;ENST00000479421.5_2_20:43531717-43535076:+|nuORF;nc|ENSG00000164924|P63104-2|YWHAZ;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB;ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF	ENSG00000108953|ENST00000264335|YWHAE;NEO1-YWHAE|1|fusion;ENSG00000170027|ENST00000307630|YWHAG;ENSG00000134308|ENST00000238081|YWHAQ;ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MATCH	OvCa99_classI_Rep5	1		2	532.78645	1063.55835	2.1251	0.0011322	-5.3061	-0.002827	-3.181	-0.0016948	533.2857580288182	85.778	0.24893	85.778	85.705	85.954	0	-0.045471	-0.0066256	NaN	80.455	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	424430			22289	3868;2689;15425;7066;4278	18241	18264				87			0.029109461601592557
KDSTLIMQL	9	Oxidation (M)	_KDSTLIM(Oxidation (M))QL_					0	0	1		ENSG00000108953|ENST00000264335|YWHAE;nc|ENSG00000108953|P62258-2|YWHAE;YWHAE-SLC43A2|1|fusion;YWHAB|p.R224W|1|0.06|ENSG00000166913|chr20:44906082-44906082|A/T|missense_variant;ENST00000399764.3_1_9:34922183-34922564:-|nuORF;nc|ENSG00000175793|P31947-2|SFN;ENSG00000175793|ENST00000339276|SFN;NEO1-YWHAE|1|fusion;ENSG00000170027|ENST00000307630|YWHAG;ENSG00000134308|ENST00000238081|YWHAQ;ENST00000479421.5_2_20:43531717-43535076:+|nuORF;nc|ENSG00000164924|P63104-2|YWHAZ;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB;ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF	ENSG00000108953|ENST00000264335|YWHAE;NEO1-YWHAE|1|fusion;ENSG00000170027|ENST00000307630|YWHAG;ENSG00000134308|ENST00000238081|YWHAQ;ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MATCH	OvCa9_classI_Rep2	2		2	532.78645	1063.55835	-0.042364	-2.2571E-05	-0.33108	-0.0001764	-0.37344	-0.00019897	532.7859803088967	87.329	1.3987	85.898	85.228	86.627	-1.4311	0.074901	-0.0013244	NaN	80.455	72	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	251170			22290	3868;2689;15425;7066;4278	18241	18264				87			0.029109461601592557
KDSVSLTWL	9	Unmodified	_KDSVSLTWL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.7842407226562	2	524.787307	1047.56006	1.2172	0.00063876	1.4217	0.00074609	2.6389	0.0013848	524.7875156016894	81.801	1.0672	81.801	81.455	82.522	0					36	25	2	0	0	0	0.027017	1	8467	8467		116.9	19.431	1	601630			22291	5793;36288	18242	18265	24699	24699					0.038183232404207956
KDTAKKIAK	9	Unmodified	_KDTAKKIAK_					0	0	0			REV__tr|A0A7D6ZEK3|A0A7D6ZEK3_9CLOTDUF1048domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14005PE=4SV=1	REV__tr|A0A7D6ZEK3|A0A7D6ZEK3_9CLOTDUF1048domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14005PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.28411865234375	2	501.818941	1001.62333	-0.20377	-0.00010226	3.2374	0.0016246	3.0336	0.0015223	502.32328082134114	81.174	0.70317	79.525	79.013	79.716	-1.6485					15	13	2	0	0	0	0.027462	1	6891	6891		19.997	5.1319	1	13488	+		22292	31947	18243	18266	24700	24700					0.12258308748323543
KDTANKNFYDV	11	Unmodified	_KDTANKNFYDV_					0	0	0			REV__tr|A0A7D6VP38|A0A7D6VP38_9CLOTUvrB/UvrCmotif-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21485PE=4SV=1	REV__tr|A0A7D6VP38|A0A7D6VP38_9CLOTUvrB/UvrCmotif-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21485PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	439.556640625	3	438.882337	1313.62518	1.0642	0.00046706	-2.4488	-0.0010747	-1.3846	-0.00060768	438.8809163465935	31.037	0.33429	31.037	30.93	31.264	0					9	6	2	0	0	0	0.026204	1	1237	1237		21.78	0	1	33243	+		22293	31226	18244	18267	24701	24701					-0.019087270243971943
KDTATISL	8	Unmodified	_KDTATISL_					0	0	0			REV__tr|A0A553SIJ0|A0A553SIJ0_NIACIPeptidaseS8OS=NialliacirculansOX=1397GN=CEQ21_14910PE=3SV=1	REV__tr|A0A553SIJ0|A0A553SIJ0_NIACIPeptidaseS8OS=NialliacirculansOX=1397GN=CEQ21_14910PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	424.7403564453125	2	424.739825	847.465098	0.27403	0.00011639	1.4039	0.0005963	1.6779	0.00071269	424.7402958154433	31.1	1.0259	31.1	30.881	31.906	0					45	20	4	0	0	0	0.73626	1	1249	1249		33.516	0	1	866400	+		22294	29895	18245	18268	24702	24702					0.03526389769240268
KDTDANVAE	9	Unmodified	_KDTDANVAE_					0	0	0			REV__ENSG00000100077|ENST00000324198|GRK3	REV__ENSG00000100077|ENST00000324198|GRK3	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.7679748535156	2	481.724904	961.435254	-0.55391	-0.00026683	2.8212	0.0013591	2.2673	0.0010922	481.7257877504921	33.864	0.28799	33.864	33.681	33.969	0					7	5	2	0	0	0	0.027462	1	1567	1567		32.751	7.1765	1	34107	+		22295	17360	18246	18269	24703	24703					-0.047005939667656094
KDTLPARII	9	Unmodified	_KDTLPARII_					0	0	0			REV__ENST00000540608.5_1_18:21119776-21166285:-|nuORF	REV__ENST00000540608.5_1_18:21119776-21166285:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	513.8200073242188	2	513.818941	1025.62333	2.2473	0.0011547	0.031237	1.605E-05	2.2785	0.0011707	513.8188735009146	80.576	0.97214	80.576	80.234	81.206	0					51	22	3	0	0	0	0.28934	1	8251	8251		64.207	3.2353	1	3955000	+		22296	19741	18247	18270	24704	24704					0.11154308748336916
KDTQGLLAVG	10	Unmodified	_KDTQGLLAVG_					0	0	0		nc|ENSG00000215912|A8MYJ7|TTC34;ENSG00000215912|ENST00000401095|TTC34	nc|ENSG00000215912|A8MYJ7|TTC34	nc|ENSG00000215912|A8MYJ7|TTC34	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.2914733886719	2	501.284931	1000.55531	2.0422	0.0010237	0.1272	6.3765E-05	2.1694	0.0010875	501.2853981540012	92.896	0.41801	92.896	92.635	93.053	0					13	9	2	0	0	0	0.027084	1	10052	10052		11.511	0	1	651880			22297	9212	18248	18271	24705	24705					0.05505439097657927
KDTRPAIQ	8	Unmodified	_KDTRPAIQ_					0	0	0			REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|196|3|sense	REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|196|3|sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	465.2857666015625	2	464.764166	927.513779	1.1093	0.00051555	3.4764	0.0016157	4.5857	0.0021313	464.7654772077493	126.91	0.57333	125.83	125.65	126.22	-1.0715					11	10	2	0	0	0	0.028476	1	9907	9907		42.396	24.072	1	14400	+		22298	28494	18249	18272	24706	24706					0.047123031289856954
KDVFMRYH	8	Unmodified	_KDVFMRYH_					0	0	0		ENSG00000166266|ENST00000393094|CUL5	ENSG00000166266|ENST00000393094|CUL5	ENSG00000166266|ENST00000393094|CUL5	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.2736206054688	2	548.273844	1094.53313	-1.3146	-0.00072079	0.20139	0.00011042	-1.1133	-0.00061037	548.2738008340743	43.251	1.3847	40.243	39.853	41.238	-3.0074					59	26	3	0	0	0	0.72896	1	2062	2062		37.159	1.5408	1	469700			22299	6658	18250	18273	24707	24707					-0.010350638517593325
KDVFMRYH	8	Unmodified	_KDVFMRYH_					0	0	0		ENSG00000166266|ENST00000393094|CUL5	ENSG00000166266|ENST00000393094|CUL5	ENSG00000166266|ENST00000393094|CUL5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	548.273844	1094.53313	0.85825	0.00047056	-1.7532	-0.00096122	-0.89492	-0.00049066	548.2726850116195	43.049	0.98896	40.339	40.016	41.005	-2.7097	0.048115	-0.0011923	NaN	37.159	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86826			22300	6658	18250	18273							-0.010350638517593325
KDVGIWLK	8	Unmodified	_KDVGIWLK_					0	0	0		ENSG00000161904|ENST00000293760|LEMD2;nc|ENSG00000161904|Q8NC56-2|LEMD2	ENSG00000161904|ENST00000293760|LEMD2	ENSG00000161904|ENST00000293760|LEMD2	MULTI-MSMS	OvCa9_classI_Rep2	2	479.7862548828125	2	479.789653	957.564752	-2.7309	-0.0013103	-1.8663	-0.00089541	-4.5971	-0.0022057	479.7886280773358	36.925	0.73951	34.216	34.09	34.83	-2.7097					26	14	3	0	0	0	0.6962	1	1645	1645		44.117	0	1	115520			22301	6141	18251	18274	24708	24708					0.08427252173839861
KDVIELIPS	9	Unmodified	_KDVIELIPS_					0	0	0			REV__tr|A0A7D7A0P6|A0A7D7A0P6_9CLOTasparaginesynthase(glutamine-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=asnBPE=3SV=1	REV__tr|A0A7D7A0P6|A0A7D7A0P6_9CLOTasparaginesynthase(glutamine-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=asnBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.84368896484375	2	507.297507	1012.58046	-0.89203	-0.00045253	2.3054	0.0011695	1.4134	0.00071702	507.8004498049309	76.342	0.6824	74.488	74.096	74.779	-1.854					27	12	3	0	0	0	0.027462	1	6283	6283		24.203	0	1	27473	+		22302	32451	18252	18275	24709	24709					0.0746749390025343
KDVIEQIVK	9	Unmodified	_KDVIEQIVK_					0	0	0			REV__FXR1|p.T411Nfs*4|1|0.24|ENSG00000114416|chr3:180968080-180968081|-/A|frameshift_variant	REV__FXR1|p.T411Nfs*4|1|0.24|ENSG00000114416|chr3:180968080-180968081|-/A|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.294921875	2	536.324057	1070.63356	-0.43869	-0.00023528	4.4462	0.0023846	4.0075	0.0021493	536.3258824650812	40.335	1.3929	40.335	39.756	41.149	0					45	30	2	0	0	0	0.02741	1	2488	2488		51.335	0	1	89717	+		22303	18186	18253	18276	24710	24710					0.10106871682910423
KDVIYRELI	9	Unmodified	_KDVIYRELI_					0	0	0			REV__tr|A0A553SK13|A0A553SK13_NIACIThreonine--tRNAligaseOS=NialliacirculansOX=1397GN=thrSPE=3SV=1	REV__tr|A0A553SK13|A0A553SK13_NIACIThreonine--tRNAligaseOS=NialliacirculansOX=1397GN=thrSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	574.8358764648438	2	574.837331	1147.66011	0.90554	0.00052054	-1.424	-0.00081856	-0.51844	-0.00029802	574.8365086671698	89.906	5.8582	88.604	88.285	94.143	-1.302					235	114	5	0	0	0	0.2784	2	7959	7929;7959		65.465	17.506	1	3839600	+		22304	30064	18254	18277	24711;24712	24712					0.0921856057423156
KDVIYRELI	9	Unmodified	_KDVIYRELI_					0	0	0			REV__tr|A0A553SK13|A0A553SK13_NIACIThreonine--tRNAligaseOS=NialliacirculansOX=1397GN=thrSPE=3SV=1	REV__tr|A0A553SK13|A0A553SK13_NIACIThreonine--tRNAligaseOS=NialliacirculansOX=1397GN=thrSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	574.8375854492188	2	574.837331	1147.66011	-1.4106	-0.00081085	0.80962	0.0004654	-0.60095	-0.00034545	574.8376960382861	90.862	4.6623	88.781	88.464	93.126	-2.0805					220	93	6	0	0	0	0.17606	3	5674	5656;5674;5692		80.455	14.025	1	4849000	+		22305	30064	18254	18277	24713;24714;24715	24714					0.0921856057423156
KDVKELTIE	9	Unmodified	_KDVKELTIE_					0	0	0			REV__tr|A0A7D6ZYH8|A0A7D6ZYH8_9CLOTDUF4342domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16405PE=4SV=1	REV__tr|A0A7D6ZYH8|A0A7D6ZYH8_9CLOTDUF4342domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16405PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.807373046875	2	537.805697	1073.59684	-0.95901	-0.00051576	1.6634	0.00089458	0.70438	0.00037882	537.8066148682773	98.63	1.9396	96.251	95.773	97.713	-2.3786					88	37	3	0	0	0	0.2784	1	8788	8788		65.465	0	1	602400	+		22306	32374	18255	18278	24716	24716					0.06298575066307421
KDVKWSSV	8	Unmodified	_KDVKWSSV_					0	0	0		nc|ENSG00000141441|Q9H706-2|GAREM1;nc|ENSG00000141441|Q9H706-3|GAREM1;ENSG00000141441|ENST00000269209|GAREM1	nc|ENSG00000141441|Q9H706-2|GAREM1	nc|ENSG00000141441|Q9H706-2|GAREM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.2412109375	2	474.761092	947.507631	2.1358	0.001014	-0.12631	-5.9968E-05	2.0095	0.00095401	474.7608332473698	74.913	0.36874	74.913	74.718	75.087	0					12	8	2	0	0	0	0.028476	1	7446	7446		58.782	5.4305	1	190090			22307	4913	18256	18279	24717	24717					0.03177784897479796
KDVLPVLEE	9	Unmodified	_KDVLPVLEE_					0	0	0		tr|A0A553SRG1|A0A553SRG1_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_01000PE=4SV=1	tr|A0A553SRG1|A0A553SRG1_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_01000PE=4SV=1	tr|A0A553SRG1|A0A553SRG1_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_01000PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	521.2982177734375	2	521.294965	1040.57538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.36	1	110.36	109.86	110.86	0								0	0	0	0.17002	1	12522	12522		51.193	5.2204	1				22308	34261	18257	18280	24718	24718					0.05671190037605811
KDVLSVAF	8	Unmodified	_KDVLSVAF_					0	0	0		ENSG00000204628|ENST00000512805|RACK1;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF;ENST00000508963.1_1_5:180668485-180670896:-|nuORF;ENST00000505461.5_1_5:180668319-180670896:-|nuORF;ENST00000502890.5_1_5:180667315-180668686:-|nuORF;ENST00000507261.1_1_5:180668485-180669312:-|nuORF	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-MSMS	OvCa9_classI_Rep2	2	439.7528076171875	2	439.752736	877.490919	0.23415	0.00010297	0.41112	0.00018079	0.64527	0.00028376	439.7526759590426	103.42	1.1856	102.74	102.43	103.61	-0.68459					54	23	3	0	0	0	0.6345	1	9547	9547		56.721	7.2795	1	176450			22309	9013	18258	18281	24719	24719					0.047272840115169856
KDVLYRALL	9	Unmodified	_KDVLYRALL_					0	0	0		ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	ENSG00000119927|ENST00000348367|GPAM	MULTI-MSMS	OvCa99_classI_Rep5	1	545.8362426757812	2	545.834591	1089.65463	2.1717	0.0011854	0.23084	0.000126	2.4025	0.0013114	545.834561398339	84.081	1.0016	84.081	83.757	84.758	0					48	21	4	0	0	0	0.16562	1	8771	8771		82.241	24.011	1	2514000			22310	3405	18259	18282	24720	24720					0.11338881782421595
KDVNFNELN	9	Unmodified	_KDVNFNELN_					0	0	0			REV__nc|ENSG00000104812|P13807-2|GYS1	REV__nc|ENSG00000104812|P13807-2|GYS1	MULTI-MSMS	OvCa99_classI_Rep5	1	546.7699584960938	2	546.769645	1091.52474	-0.72796	-0.00039803	3.4638	0.0018939	2.7358	0.0014959	546.7713587243154	39.484	0.72822	39.484	39.332	40.06	0					35	16	3	0	0	0	0.2422	1	2329	2329		69.628	9.5094	1	716180	+		22311	17682	18260	18283	24721	24721					-0.017363392873676275
KDVNLAEFAVA	11	Unmodified	_KDVNLAEFAVA_					0	0	0		ENST00000473097.5_1_1:1288733-1289815:-|nuORF;ENSG00000162576|ENST00000309212|MXRA8;nc|ENSG00000162576|Q9BRK3-4|MXRA8;nc|ENSG00000162576|Q9BRK3-3|MXRA8;nc|ENSG00000162576|Q9BRK3-2|MXRA8	ENST00000473097.5_1_1:1288733-1289815:-|nuORF;ENSG00000162576|ENST00000309212|MXRA8	ENSG00000162576|ENST00000309212|MXRA8	MULTI-MSMS	OvCa99_classI_Rep5	1	588.8174438476562	2	588.816596	1175.61864	2.1068	0.0012405	-2.0279	-0.001194	0.078923	4.6471E-05	588.8151574894945	110.44	0.58085	110.44	110.35	110.94	0					22	12	2	0	0	0	0.41656	1	12541	12541		59.931	1.7009	1	797850			22312	6195;12404	18261	18284	24722	24722					0.037853798148944406
KDVNLAEFAVA	11	Unmodified	_KDVNLAEFAVA_					0	0	0		ENST00000473097.5_1_1:1288733-1289815:-|nuORF;ENSG00000162576|ENST00000309212|MXRA8;nc|ENSG00000162576|Q9BRK3-4|MXRA8;nc|ENSG00000162576|Q9BRK3-3|MXRA8;nc|ENSG00000162576|Q9BRK3-2|MXRA8	ENST00000473097.5_1_1:1288733-1289815:-|nuORF;ENSG00000162576|ENST00000309212|MXRA8	ENSG00000162576|ENST00000309212|MXRA8	MULTI-MATCH	OvCa9_classI_Rep3	3		2	588.816596	1175.61864	0.35878	0.00021125	0.1021	6.0117E-05	0.46087	0.00027137	589.3180157326135	111.84	0.88786	110.74	110.5	111.39	-1.1038	0.10053	0.00072121	NaN	59.931	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49638			22313	6195;12404	18261	18284							0.037853798148944406
KDVNLAEFAVA	11	Unmodified	_KDVNLAEFAVA_					0	0	0		ENST00000473097.5_1_1:1288733-1289815:-|nuORF;ENSG00000162576|ENST00000309212|MXRA8;nc|ENSG00000162576|Q9BRK3-4|MXRA8;nc|ENSG00000162576|Q9BRK3-3|MXRA8;nc|ENSG00000162576|Q9BRK3-2|MXRA8	ENST00000473097.5_1_1:1288733-1289815:-|nuORF;ENSG00000162576|ENST00000309212|MXRA8	ENSG00000162576|ENST00000309212|MXRA8	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	588.816596	1175.61864	0.044157	2.6E-05	0.21592	0.00012714	0.26008	0.00015314	588.8164912165785	112.25	0.87243	110.74	110.42	111.29	-1.5111	0.097821	0.00085525	NaN	59.931	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39343			22314	6195;12404	18261	18284							0.037853798148944406
KDVNPHTQ	8	Unmodified	_KDVNPHTQ_					0	0	0			REV__nc|ENSG00000095139|P48444-2|ARCN1	REV__nc|ENSG00000095139|P48444-2|ARCN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.2911376953125	2	469.738148	937.461744	-0.09015	-4.2347E-05	-0.037776	-1.7745E-05	-0.12793	-6.0092E-05	469.73794705434653	46.405	1.1374	43.332	43.083	44.221	-3.0724					31	21	2	0	0	0	0.028476	1	2451	2451		42.396	11.892	1	92484	+		22315	17282	18262	18285	24723	24723					-0.00948860284768216
KDVNSLWDL	9	Unmodified	_KDVNSLWDL_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2621459960938	2	545.282389	1088.55022	1.9468	0.0010616	-2.9267	-0.0015959	-0.97986	-0.0005343	545.2809576948603	77.548	0.66973	77.548	77.002	77.672	0					19	15	2	0	0	0	0.027431	1	7841	7841		45.022	4.964	1	278240	+		22316	20262	18263	18286	24724	24724					0.009491352350551097
KDVPFIFIK	9	Unmodified	_KDVPFIFIK_					0	0	0		tr|A0A7D6VSB8|A0A7D6VSB8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15530PE=4SV=1	tr|A0A7D6VSB8|A0A7D6VSB8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15530PE=4SV=1	tr|A0A7D6VSB8|A0A7D6VSB8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15530PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	553.8087768554688	2	553.83406	1105.65357	0.80585	0.00044631	2.7756	0.0015372	3.5815	0.0019835	553.8347612552899	97.159	0.59255	96.201	96.068	96.661	-0.95857					16	11	2	0	0	0	0.027462	1	8789	8789		56.721	0	1	22973			22317	35010	18264	18287	24725	24725					0.10496667413508476
KDVRKRFPQHT	11	Unmodified	_KDVRKRFPQHT_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2;ENST00000559606.1_1_14:24704927-24706289:+|nuORF;ENST00000559287.5_1_14:24702733-24706289:+|nuORF	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.8039245605469	3	471.268748	1410.78442	-0.32722	-0.00015421	2.2621	0.0010661	1.9349	0.00091186	471.2698180846589	55.427	0.53116	55.427	55.233	55.764	0					27	12	3	0	0	0	0.026232	1	4568	4568		26.75	2.5179	1	527690			22318	2124	18265	18288	24726	24726					0.09545451114263415
KDVTEEPTL	9	Unmodified	_KDVTEEPTL_					0	0	0			REV__tr|A0A553SL78|A0A553SL78_NIACIPrephenatedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_20090PE=3SV=1	REV__tr|A0A553SL78|A0A553SL78_NIACIPrephenatedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_20090PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7800903320312	2	516.266404	1030.51826	1.8894	0.00097544	-1.1243	-0.00058042	0.76516	0.00039503	516.2658707832073	85.933	0.24153	85.933	85.791	86.033	0					8	5	2	0	0	0	0.027462	1	9053	9053		19.997	0.89325	1	472510	+		22319	30196	18266	18289	24727	24727					0.004217227612343777
KDVTVEKAESL	11	Unmodified	_KDVTVEKAESL_					0	0	0		ENST00000523091.5_1_8:23112705-23118098:+|nuORF;ENST00000517325.5_1_8:23104188-23118109:+|nuORF;ENSG00000147457|ENST00000397677|CHMP7	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	610.8147583007812	2	609.832443	1217.65033	0.1452	8.8545E-05	-0.06928	-4.2249E-05	0.075916	4.6296E-05	609.8319682381209	56.811	0.29553	56.811	56.623	56.918	0					11	6	3	0	0	0	0.025759	1	4729	4729		28.081	0	1	191920			22320	5359	18267	18290	24728	24728					0.05021327778194973
KDVVNILKA	9	Unmodified	_KDVVNILKA_					0	0	0		tr|A0A7D6ZH28|A0A7D6ZH28_9CLOTLargeribosomalsubunitproteinuL4OS=ClostridiumintestinaleOX=36845GN=rplDPE=3SV=1	tr|A0A7D6ZH28|A0A7D6ZH28_9CLOTLargeribosomalsubunitproteinuL4OS=ClostridiumintestinaleOX=36845GN=rplDPE=3SV=1	tr|A0A7D6ZH28|A0A7D6ZH28_9CLOTLargeribosomalsubunitproteinuL4OS=ClostridiumintestinaleOX=36845GN=rplDPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.2677307128906	2	500.313492	998.612431	-0.13699	-6.8539E-05	-0.74764	-0.00037406	-0.88463	-0.00044259	500.3130533583412	61.291	0.82381	57.861	57.494	58.318	-3.43					27	16	3	0	0	0	0.027462	1	4223	4223		44.377	19.858	1	81755			22321	35562	18268	18291	24729	24729					0.11306906374034043
KDVVNILKA	9	Unmodified	_KDVVNILKA_					0	0	0		tr|A0A7D6ZH28|A0A7D6ZH28_9CLOTLargeribosomalsubunitproteinuL4OS=ClostridiumintestinaleOX=36845GN=rplDPE=3SV=1	tr|A0A7D6ZH28|A0A7D6ZH28_9CLOTLargeribosomalsubunitproteinuL4OS=ClostridiumintestinaleOX=36845GN=rplDPE=3SV=1	tr|A0A7D6ZH28|A0A7D6ZH28_9CLOTLargeribosomalsubunitproteinuL4OS=ClostridiumintestinaleOX=36845GN=rplDPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	500.313492	998.612431	-1.2118	-0.00060626	-4.2155	-0.0021091	-5.4273	-0.0027154	500.31348446174195	60.509	0.899	57.739	57.291	58.19	-2.7702	0.033882	-0.0033871	NaN	22.58	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52728			22322	35562	18268	18291							0.11306906374034043
KDVVYLPAET	10	Unmodified	_KDVVYLPAET_					0	0	0			REV__nc|ENSG00000112655|Q13308-3|PTK7	REV__nc|ENSG00000112655|Q13308-3|PTK7	MULTI-SECPEP	OvCa9_classI_Rep3	3	566.8175659179688	2	567.805697	1133.59684	-1.1927	-0.00067725	-4.3657	-0.0024789	-5.5585	-0.0031561	568.3035535844224	86.878	0.9141	84.701	84.431	85.345	-2.1768					24	17	2	0	0	0	0.02706	1	5264	5264		17.468	3.3309	1	41872	+		22323	16081	18269	18292	24730	24730					0.03538575066318117
KDVYTLTLI	9	Unmodified	_KDVYTLTLI_					0	0	0			REV__ENSG00000182934|ENST00000332118|SRPRA	REV__ENSG00000182934|ENST00000332118|SRPRA	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.7413330078125	2	533.313158	1064.61176	-0.50951	-0.00027173	-2.2731	-0.0012123	-2.7826	-0.001484	533.3118171962836	29.112	0.59804	29.112	28.888	29.486	0					26	11	3	0	0	0	0.027462	1	1039	1039		19.997	0	1	537600	+		22324	22328	18270	18293	24731	24731					0.08204066934331422
KDWIRCRQY	9	Unmodified	_KDWIRCRQY_					0	0	0			REV__ENST00000533696.5_1_9:102677473-102691149:+|nuORF	REV__ENST00000533696.5_1_9:102677473-102691149:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	633.685546875	2	634.321857	1266.62916	2.1041	0.0013347	-1.558	-0.00098826	0.54616	0.00034644	634.8232056683429	125.89	0.27806	125.89	125.67	125.95	0					6	5	2	0	0	0	0.027462	1	14546	14546		24.519	0.31644	1	47362	+		22325	19415	18271	18294	24732	24732					0.00651083988350365
KDWKNNQL	8	Unmodified	_KDWKNNQL_					0	0	0		ENST00000531371.5_1_11:104776194-104789795:-|nuORF	ENST00000531371.5_1_11:104776194-104789795:-|nuORF	ENST00000531371.5_1_11:104776194-104789795:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.817626953125	2	523.274898	1044.53524	-0.64054	-0.00033518	2.4389	0.0012762	1.7983	0.00094102	523.2761768631955	67.756	1.0367	65.095	64.397	65.433	-2.661					27	20	2	0	0	0	0.028476	1	5249	5249		39.253	0	1	17339			22326	13305	18272	18295	24733	24733					0.014756881576886371
KDWPKVRSL	9	Unmodified	_KDWPKVRSL_					0	0	0			REV__ENST00000341618.8_2_21:30547485-30547602:+|nuORF	REV__ENST00000341618.8_2_21:30547485-30547602:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.5889892578125	2	564.82984	1127.64513	0.67598	0.00038181	1.9607	0.0011075	2.6367	0.0014893	564.83091420117	46.073	0.35362	46.073	45.844	46.198	0					10	7	2	0	0	0	0.027462	1	3230	3230		16.007	5.7415	1	59033	+		22327	24638	18273	18296	24734	24734					0.08641113496878461
KDWQRHNKK	9	Unmodified	_KDWQRHNKK_					0	0	0		L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|131|3|sense	L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|131|3|sense	L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|131|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	620.80029296875	2	620.338895	1238.66324	-0.31759	-0.00019701	-0.55227	-0.0003426	-0.86987	-0.00053961	620.8399539584573	22.139	0.18105	22.139	22.047	22.228	0					7	4	2	0	0	0	0.027462	1	186	186		10.866	2.0432	1	12761			22328	14710	18274	18297	24735	24735					0.053452484715762694
KDWRKKWIEMF	11	Unmodified	_KDWRKKWIEMF_					0	0	0			REV__nc|ENSG00000093072|Q9NZK5-2|ADA2	REV__nc|ENSG00000093072|Q9NZK5-2|ADA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.30322265625	3	522.946506	1565.81769	-0.5605	-0.00029311	-0.99522	-0.00052045	-1.5557	-0.00081356	523.2798295887117	44.909	0.13773	44.909	44.84	44.977	0					4	2	2	0	0	0	0.026187	1	3060	3060		14.243	0	1	20719	+		22329	17275	18275	18298	24736	24736					0.05741316841931621
KDWRPAITI	9	Unmodified	_KDWRPAITI_					0	0	0		ENSG00000103275|ENST00000397514|UBE2I	ENSG00000103275|ENST00000397514|UBE2I	ENSG00000103275|ENST00000397514|UBE2I	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.7763671875	2	550.316566	1098.61858	-0.23274	-0.00012808	3.3348	0.0018352	3.1021	0.0017071	550.3186911919304	58.887	0.85144	55.495	55.2	56.051	-3.392					27	16	2	0	0	0	0.027462	1	3898	3898		24.519	0	1	53452			22330	2304	18276	18299	24737	24737					0.07321424605561333
KDYEKLKEIE	10	Unmodified	_KDYEKLKEIE_					0	0	0			REV__tr|A0A7D7AC42|A0A7D7AC42_9CLOTEthanolamineutilizationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17710PE=4SV=1	REV__tr|A0A7D7AC42|A0A7D7AC42_9CLOTEthanolamineutilizationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17710PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	432.2239074707031	3	432.234487	1293.68163	-0.38375	-0.00016587	-0.089926	-3.8869E-05	-0.47367	-0.00020474	432.2352596456176	59.61	0.34969	59.61	59.452	59.802	0					12	8	3	0	0	0	0.02752	1	5126	5126		96.665	2.2559	1	275060	+		22331	32684	18277	18300	24738	24738					0.046539008122636005
KDYHFPIL	8	Unmodified	_KDYHFPIL_					0	0	0		tr|A0A553SIU1|A0A553SIU1_NIACIUndecaprenyl/decaprenyl-phosphatealpha-N-acetylglucosaminyl1-phosphatetransferaseOS=NialliacirculansOX=1397GN=CEQ21_15515PE=4SV=1	tr|A0A553SIU1|A0A553SIU1_NIACIUndecaprenyl/decaprenyl-phosphatealpha-N-acetylglucosaminyl1-phosphatetransferaseOS=NialliacirculansOX=1397GN=CEQ21_15515PE=4SV=1	tr|A0A553SIU1|A0A553SIU1_NIACIUndecaprenyl/decaprenyl-phosphatealpha-N-acetylglucosaminyl1-phosphatetransferaseOS=NialliacirculansOX=1397GN=CEQ21_15515PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.3115234375	2	516.779285	1031.54402	-0.31025	-0.00016033	-3.1163	-0.0016104	-3.4265	-0.0017707	516.778041946509	82.541	0.59587	80.244	79.785	80.381	-2.2963					28	11	3	0	0	0	0.028476	1	4628	4628		28.254	2.6802	1	71402			22332	33423	18278	18301	24739	24739					0.029506617941933655
KDYHFPIL	8	Unmodified	_KDYHFPIL_					0	0	0		tr|A0A553SIU1|A0A553SIU1_NIACIUndecaprenyl/decaprenyl-phosphatealpha-N-acetylglucosaminyl1-phosphatetransferaseOS=NialliacirculansOX=1397GN=CEQ21_15515PE=4SV=1	tr|A0A553SIU1|A0A553SIU1_NIACIUndecaprenyl/decaprenyl-phosphatealpha-N-acetylglucosaminyl1-phosphatetransferaseOS=NialliacirculansOX=1397GN=CEQ21_15515PE=4SV=1	tr|A0A553SIU1|A0A553SIU1_NIACIUndecaprenyl/decaprenyl-phosphatealpha-N-acetylglucosaminyl1-phosphatetransferaseOS=NialliacirculansOX=1397GN=CEQ21_15515PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	516.779285	1031.54402	0.59292	0.00030641	-2.5676	-0.0013269	-1.9747	-0.0010205	516.778226744176	81.75	0.51889	80.101	79.919	80.438	-1.6485	-0.071552	0.00031405	NaN	25.45	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62601			22333	33423	18278	18301							0.029506617941933655
KDYKSDVLEL	10	Unmodified	_KDYKSDVLEL_					0	0	0		tr|A0A553SIR3|A0A553SIR3_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_15335PE=3SV=1	tr|A0A553SIR3|A0A553SIR3_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_15335PE=3SV=1	tr|A0A553SIR3|A0A553SIR3_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_15335PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	403.579345703125	3	403.883566	1208.62887	-0.0049251	-1.9892E-06	4.2256	0.0017066	4.2207	0.0017047	403.88500964219423	63.355	0.89442	60.611	60.266	61.161	-2.7444					39	16	3	0	0	0	0.027028	1	4848	4848		23.378	0	1	28760			22334	33416	18279	18302	24740	24740					0.03289942749483998
KDYLKSKWYR	10	Unmodified	_KDYLKSKWYR_					0	0	0		tr|A0A553SUA9|A0A553SUA9_NIACISigma-70familyRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=CEQ21_06660PE=3SV=1	tr|A0A553SUA9|A0A553SUA9_NIACISigma-70familyRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=CEQ21_06660PE=3SV=1	tr|A0A553SUA9|A0A553SUA9_NIACISigma-70familyRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=CEQ21_06660PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	463.7745666503906	3	462.922467	1385.74557	-0.98134	-0.00045428	-1.8146	-0.00084002	-2.7959	-0.0012943	462.92142714060867	77.165	0.67824	74.793	74.505	75.184	-2.3715					23	12	3	0	0	0	0.027035	1	4016	4016		36.318	7.7409	1	47928			22335	34591	18280	18303	24741	24741					0.06812725759891691
KDYLVAGHVN	10	Unmodified	_KDYLVAGHVN_					0	0	0			REV__ISG20-UBA2|1|fusion	REV__ISG20-UBA2|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.318359375	2	558.29583	1114.57711	2.5162	0.0014048	-3.7206	-0.0020772	-1.2044	-0.0006724	558.2933126077947	106.67	0.57538	106.67	106.27	106.85	0					19	12	2	0	0	0	0.027001	1	12020	12020		21.686	0	1	269990	+		22336	28316	18281	18304	24742	24742					0.024402438462402642
KDYLVAGHVN	10	Unmodified	_KDYLVAGHVN_					0	0	0			REV__ISG20-UBA2|1|fusion	REV__ISG20-UBA2|1|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	558.29583	1114.57711	0.48254	0.0002694	-4.1974	-0.0023434	-3.7148	-0.002074	558.293174464232	106.74	1.3291	106.43	106.03	107.36	-0.30836	0.031654	-0.00083649	NaN	35.152	55	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67180	+		22337	28316	18281	18304							0.024402438462402642
KDYNEKLL	8	Unmodified	_KDYNEKLL_					0	0	0			REV__nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L	REV__nc|ENSG00000103494|Q68CZ1-2|RPGRIP1L	MULTI-MSMS	OvCa99_classI_Rep5	1	511.7800598144531	2	511.779482	1021.54441	1.5757	0.00080639	-2.5306	-0.0012951	-0.95499	-0.00048875	511.77813205808326	130.23	0.71349	130.23	129.87	130.58	0					38	14	4	0	0	0	0.68714	1	15091	15091		45.952	0	1	558830	+		22338	17620	18282	18305	24743	24743					0.034500367233818
KDYRAAWLL	9	Unmodified	_KDYRAAWLL_					0	0	0			REV__ENSG00000081051|ENST00000395792|AFP	REV__ENSG00000081051|ENST00000395792|AFP	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.3330688476562	2	568.316566	1134.61858	1.7636	0.0010023	1.045	0.00059391	2.8086	0.0015962	568.3170070027838	93.246	0.33674	93.246	92.968	93.305	0					16	7	3	0	0	0	0.027448	1	10106	10106		44.117	14.947	1	364280	+		22339	17064	18283	18306	24744	24744					0.056654246055586555
KDYRKEVK	8	Unmodified	_KDYRKEVK_					0	0	0			REV__DGKH|p.T529R|1|0.06|ENSG00000102780|chr13:42187096-42187096|C/G|missense_variant	REV__DGKH|p.T529R|1|0.06|ENSG00000102780|chr13:42187096-42187096|C/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.7875366210938	2	533.306198	1064.59784	0.14633	7.8041E-05	-0.025975	-1.3852E-05	0.12036	6.4189E-05	533.8083856780089	88.617	1.3475	86.486	85.597	86.944	-2.1309					34	26	2	0	0	0	0.028476	1	5312	5312		30.318	0	1	126750	+		22340	16289	18284	18307	24745	24745					0.06812834225888764
KDYVKAGGIL	10	Unmodified	_KDYVKAGGIL_					0	0	0		ENSG00000008311|ENST00000417368|AASS	ENSG00000008311|ENST00000417368|AASS	ENSG00000008311|ENST00000417368|AASS	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.2924194335938	2	532.310949	1062.60735	-1.4094	-0.00075022	2.7733	0.0014763	1.3639	0.00072603	532.3104206850848	93.925	1.0004	91.417	91.171	92.171	-2.5072					39	20	3	0	0	0	0.026782	1	8205	8205		30.318	0	1	62459			22341	917	18285	18308	24746	24746					0.0785460251142922
KDYVKAGGIL	10	Unmodified	_KDYVKAGGIL_					0	0	0		ENSG00000008311|ENST00000417368|AASS	ENSG00000008311|ENST00000417368|AASS	ENSG00000008311|ENST00000417368|AASS	MULTI-MATCH	OvCa99_classI_Rep5	1		2	532.310949	1062.60735	1.7634	0.00093867	-8.6208	-0.0045889	-6.8574	-0.0036503	532.3053774810897	91.291	0.36137	91.291	91.098	91.459	0	-0.062561	-0.0068367	NaN	30.318	19	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3084300			22342	917	18285	18308							0.0785460251142922
KEAADTERL	9	Unmodified	_KEAADTERL_					0	0	0		ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	MULTI-MSMS	OvCa99_classI_Rep5	1	516.7689819335938	2	516.769645	1031.52474	-0.91916	-0.000475	0.5121	0.00026464	-0.40706	-0.00021036	516.769780082572	33.897	0.77667	33.897	33.384	34.161	0					26	15	2	0	0	0	0.14445	1	1590	1590		85.862	9.0877	1	913420			22343	4448	18286	18309	24747	24747					0.010236607126216768
KEAAGEGPAL	10	Unmodified	_KEAAGEGPAL_					0	0	0		ENST00000557159.5_1_14:20924026-20925664:+|nuORF;ENSG00000100823|ENST00000216714|APEX1	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	471.74810791015625	2	471.748182	941.481811	-0.33108	-0.00015619	1.5242	0.00071902	1.1931	0.00056283	471.7482688736463	48.315	0.99792	48.315	47.897	48.895	0					52	22	5	0	0	0	0.25842	1	3536	3536		85.862	6.1492	1	1735100			22344	2109	18287	18310	24748	24748					0.008728906551823457
KEAALSTAL	9	Unmodified	_KEAALSTAL_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	OvCa99_classI_Rep5	1	452.26171875	2	452.260925	902.507297	1.1137	0.00050369	-0.76135	-0.00034433	0.35238	0.00015937	452.26038499781623	66.988	1.3772	66.988	66.619	67.996	0					64	34	3	0	0	0	0.066102	2	6222	6222;6250		109.48	3.0631	1	7601500			22345	6091	18288	18311	24749;24750	24749					0.05214365177585023
KEAAQEAVKL	10	Unmodified	_KEAAQEAVKL_					0	0	0		nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000271793|O60506-5|SYNCRIP;nc|ENSG00000125944|O43390-4|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR;ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR	nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-MSMS	OvCa99_classI_Rep5	1	543.8116455078125	2	543.811313	1085.60807	-0.23552	-0.00012808	0.092995	5.0572E-05	-0.14253	-7.7508E-05	543.8112165245705	47.23	1.09	47.23	46.938	48.028	0					47	24	3	0	0	0	0.065922	1	3427	3427		123.21	7.7141	1	2485900			22346	4365	18289	18312	24751	24751					0.06869397160448898
KEAEKRVQEQ	10	Unmodified	_KEAEKRVQEQ_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa99_classI_Rep5	1	622.83447265625	2	622.833308	1243.65206	-0.66526	-0.00041434	-0.77762	-0.00048433	-1.4429	-0.00089867	622.8326731327369	55.577	0.90494	55.577	55.273	56.178	0					62	21	5	0	0	0	0.44671	1	4578	4578		41.427	0.64845	1	8149300	+		22347	28942;32737;28943	18290	18313	24752	24752					0.03998381586825417
KEAELDVVKN	10	Unmodified	_KEAELDVVKN_					0	0	0			REV__tr|A0A553SGY6|A0A553SGY6_NIACIFoldaseproteinPrsAOS=NialliacirculansOX=1397GN=prsAPE=3SV=1	REV__tr|A0A553SGY6|A0A553SGY6_NIACIFoldaseproteinPrsAOS=NialliacirculansOX=1397GN=prsAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	571.8310546875	2	572.814053	1143.61355	-0.23776	-0.00013619	0.52649	0.00030158	0.28873	0.00016539	573.3167602612076	61.76	0.61446	58.302	58.151	58.765	-3.4577					17	12	2	0	0	0	0.026994	1	4264	4264		25.574	0	1	39343	+		22348	29751	18291	18314	24753	24753					0.047490759522816006
KEAENPREVL	10	Unmodified	_KEAENPREVL_					0	0	0		nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1	nc|ENSG00000099995|Q15459-2|SF3A1	nc|ENSG00000099995|Q15459-2|SF3A1	MULTI-MSMS	OvCa99_classI_Rep5	1	592.8179931640625	2	592.817127	1183.6197	-0.33765	-0.00020017	0.26028	0.0001543	-0.077371	-4.5867E-05	592.8171033997179	48.456	0.91518	48.456	48.16	49.075	0					48	20	4	0	0	0	0.28422	1	3553	3553		82.75	0.50997	1	2613100			22349	1991	18292	18315	24754	24754					0.035235941837981954
KEAESDDSD	9	Unmodified	_KEAESDDSD_					0	0	0			REV__ENSG00000084463|ENST00000261167|WBP11	REV__ENSG00000084463|ENST00000261167|WBP11	MULTI-MSMS	OvCa99_classI_Rep5	1	498.1951904296875	2	498.193633	994.372714	-0.51538	-0.00025676	0.92455	0.00046061	0.40917	0.00020385	498.1940568917307	49.141	2.0121	49.141	48.807	50.819	0					93	45	4	0	0	0	0.045281	3	3658	3634;3658;3689		122.18	37.26	1	15372000	+		22350	17122	18293	18316	24755;24756;24757	24756					-0.12469784825611896
KEAETRAEF	9	Unmodified	_KEAETRAEF_					0	0	0		nc|ENSG00000198467|P07951-3|TPM2;nc|ENSG00000198467|P07951-2|TPM2;CON__Q3SX28;ENSG00000198467|ENST00000645482|TPM2;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000143549|P06753-7|TPM3;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000167460|P67936-2|TPM4;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;ENST00000368528.3_1_3:27674554-27675208:+|nuORF;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-4|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-6|TPM1;ENSG00000140416|ENST00000403994|TPM1;ENST00000559108.1_1_15:63354467-63358183:+|nuORF;ENST00000558264.5_1_15:63353458-63363368:+|nuORF;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-5|TPM3	nc|ENSG00000198467|P07951-3|TPM2;ENSG00000167460|ENST00000643579|TPM4;ENST00000368528.3_1_3:27674554-27675208:+|nuORF;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000143549|P06753-3|TPM3	ENSG00000167460|ENST00000643579|TPM4	MULTI-MSMS	OvCa99_classI_Rep5	1	540.7688598632812	2	540.769645	1079.52474	-0.93093	-0.00050342	-0.3793	-0.00020511	-1.3102	-0.00070853	540.769440476411	36.595	1.1342	36.595	36.351	37.485	0					74	24	5	0	0	0	0.010153	2	1948	1928;1948		168.26	58.139	1	5320300		+	22351	15257;6790;15075;15054;10875	18294	18317	24758;24759	24759					-0.011843392873743142
KEAETRAEF	9	Unmodified	_KEAETRAEF_					0	0	0		nc|ENSG00000198467|P07951-3|TPM2;nc|ENSG00000198467|P07951-2|TPM2;CON__Q3SX28;ENSG00000198467|ENST00000645482|TPM2;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000143549|P06753-7|TPM3;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000167460|P67936-2|TPM4;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;ENST00000368528.3_1_3:27674554-27675208:+|nuORF;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-4|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-6|TPM1;ENSG00000140416|ENST00000403994|TPM1;ENST00000559108.1_1_15:63354467-63358183:+|nuORF;ENST00000558264.5_1_15:63353458-63363368:+|nuORF;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-5|TPM3	nc|ENSG00000198467|P07951-3|TPM2;ENSG00000167460|ENST00000643579|TPM4;ENST00000368528.3_1_3:27674554-27675208:+|nuORF;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000143549|P06753-3|TPM3	ENSG00000167460|ENST00000643579|TPM4	MULTI-MSMS	OvCa9_classI_Rep2	2	540.7681884765625	2	540.769645	1079.52474	0.31867	0.00017233	-0.40491	-0.00021897	-0.086244	-4.6638E-05	540.7692673608939	41.714	1.1834	39.004	38.783	39.966	-2.7097					50	23	3	0	0	0	0.48047	1	2195	2195		44.377	5.1244	1	202570		+	22352	15257;6790;15075;15054;10875	18294	18317	24760	24760					-0.011843392873743142
KEAETRAEF	9	Unmodified	_KEAETRAEF_					0	0	0		nc|ENSG00000198467|P07951-3|TPM2;nc|ENSG00000198467|P07951-2|TPM2;CON__Q3SX28;ENSG00000198467|ENST00000645482|TPM2;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000143549|P06753-7|TPM3;ENST00000397772.2_1_20:32500135-32500381:-|nuORF;ENST00000469717.5_1_1:154130117-154143232:-|nuORF;ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000167460|P67936-2|TPM4;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;ENST00000368528.3_1_3:27674554-27675208:+|nuORF;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-4|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-6|TPM1;ENSG00000140416|ENST00000403994|TPM1;ENST00000559108.1_1_15:63354467-63358183:+|nuORF;ENST00000558264.5_1_15:63353458-63363368:+|nuORF;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-5|TPM3	nc|ENSG00000198467|P07951-3|TPM2;ENSG00000167460|ENST00000643579|TPM4;ENST00000368528.3_1_3:27674554-27675208:+|nuORF;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000143549|P06753-3|TPM3	ENSG00000167460|ENST00000643579|TPM4	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.76806640625	2	540.769645	1079.52474	-1.6294	-0.0008811	1.456	0.00078734	-0.1734	-9.3768E-05	540.7703565737867	41.913	1.5508	38.932	38.696	40.247	-2.9804					72	29	4	0	0	0	0.13504	1	1916	1916		87.696	23.489	1	817390		+	22353	15257;6790;15075;15054;10875	18294	18317	24761	24761					-0.011843392873743142
KEAEYAGQL	9	Unmodified	_KEAEYAGQL_					0	0	0		nc|ENSG00000136603|P12757-3|SKIL;nc|ENSG00000136603|P12757-5|SKIL;ENSG00000136603|ENST00000259119|SKIL;SKIL|p.A634V|1|0.14|ENSG00000136603|chr3:170392263-170392263|C/T|missense_variant	nc|ENSG00000136603|P12757-3|SKIL	nc|ENSG00000136603|P12757-3|SKIL	MULTI-MSMS	OvCa99_classI_Rep5	1	504.7546081542969	2	504.753464	1007.49238	-0.46159	-0.00023299	-0.14815	-7.4779E-05	-0.60974	-0.00030777	504.75323981026065	55.564	0.73724	55.564	55.315	56.052	0					32	17	3	0	0	0	0.052089	1	4561	4561		117.53	42.482	1	2063300			22354	4500	18295	18318	24762	24762					-0.011071266903741162
KEAFAKVDL	9	Unmodified	_KEAFAKVDL_					0	0	0		ENSG00000102024|ENST00000355899|PLS3	ENSG00000102024|ENST00000355899|PLS3	ENSG00000102024|ENST00000355899|PLS3	MULTI-MSMS	OvCa99_classI_Rep5	1	510.7915954589844	2	510.78985	1019.56515	0.27829	0.00014215	-0.24924	-0.00012731	0.029041	1.4834E-05	510.7898661613688	67.374	0.70654	67.374	67.096	67.803	0					38	17	4	0	0	0	0.17606	1	6296	6296		80.455	5.4113	1	3388500			22355	2216	18296	18319	24763	24763					0.056146271030456774
KEAFAKVDL	9	Unmodified	_KEAFAKVDL_					0	0	0		ENSG00000102024|ENST00000355899|PLS3	ENSG00000102024|ENST00000355899|PLS3	ENSG00000102024|ENST00000355899|PLS3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	510.78985	1019.56515	0.036853	1.8824E-05	-0.65791	-0.00033605	-0.62106	-0.00031723	510.7900320152161	70.15	0.90645	67.58	67.311	68.218	-2.5707	0.10272	-0.00036269	NaN	80.455	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10889			22356	2216	18296	18319							0.056146271030456774
KEAGNQPQ	8	Unmodified	_KEAGNQPQ_					0	0	0		ENSG00000168734|ENST00000372886|PKIG	ENSG00000168734|ENST00000372886|PKIG	ENSG00000168734|ENST00000372886|PKIG	MULTI-SECPEP	OvCa99_classI_Rep5	1	436.240966796875	2	436.217049	870.419545	0.81869	0.00035713	-0.619	-0.00027002	0.19969	8.711E-05	436.2165961546438	31.242	0.28636	31.242	31.124	31.41	0					8	5	2	0	0	0	0.028476	1	1259	1259		21.96	15.224	1	25327			22357	6936	18297	18320	24764	24764					-0.02084835693142395
KEAGRRHQL	9	Unmodified	_KEAGRRHQL_					0	0	0		tr|A0A553SLH6|A0A553SLH6_NIACISporulationproteinSpoOMOS=NialliacirculansOX=1397GN=CEQ21_20635PE=4SV=1	tr|A0A553SLH6|A0A553SLH6_NIACISporulationproteinSpoOMOS=NialliacirculansOX=1397GN=CEQ21_20635PE=4SV=1	tr|A0A553SLH6|A0A553SLH6_NIACISporulationproteinSpoOMOS=NialliacirculansOX=1397GN=CEQ21_20635PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	547.81494140625	2	547.812513	1093.61047	-0.36608	-0.00020054	2.4914	0.0013648	2.1253	0.0011643	547.8138283078883	72.447	1.4369	69.845	69.472	70.909	-2.6023					73	28	4	0	0	0	0.26076	1	3453	3453		67.494	0.53175	1	752830			22358	33724	18298	18321	24765	24765					0.06741290408785972
KEAGRRHQL	9	Unmodified	_KEAGRRHQL_					0	0	0		tr|A0A553SLH6|A0A553SLH6_NIACISporulationproteinSpoOMOS=NialliacirculansOX=1397GN=CEQ21_20635PE=4SV=1	tr|A0A553SLH6|A0A553SLH6_NIACISporulationproteinSpoOMOS=NialliacirculansOX=1397GN=CEQ21_20635PE=4SV=1	tr|A0A553SLH6|A0A553SLH6_NIACISporulationproteinSpoOMOS=NialliacirculansOX=1397GN=CEQ21_20635PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	547.812513	1093.61047	-1.084	-0.00059384	-0.43999	-0.00024103	-1.524	-0.00083487	547.8119195349516	69.83	0.29289	69.83	69.712	70.005	0	-0.033205	-0.0028535	NaN	67.494	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	389380			22359	33724	18298	18321							0.06741290408785972
KEAGRRHQL	9	Unmodified	_KEAGRRHQL_					0	0	0		tr|A0A553SLH6|A0A553SLH6_NIACISporulationproteinSpoOMOS=NialliacirculansOX=1397GN=CEQ21_20635PE=4SV=1	tr|A0A553SLH6|A0A553SLH6_NIACISporulationproteinSpoOMOS=NialliacirculansOX=1397GN=CEQ21_20635PE=4SV=1	tr|A0A553SLH6|A0A553SLH6_NIACISporulationproteinSpoOMOS=NialliacirculansOX=1397GN=CEQ21_20635PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	547.812513	1093.61047	0.37462	0.00020522	1.6087	0.00088128	1.9834	0.0010865	547.8133107515388	72.23	1.1997	69.723	69.433	70.632	-2.5071	-0.14073	-0.00060887	NaN	67.494	64	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	455620			22360	33724	18298	18321							0.06741290408785972
KEAGRRHQL	9	Unmodified	_KEAGRRHQL_					0	0	0		tr|A0A553SLH6|A0A553SLH6_NIACISporulationproteinSpoOMOS=NialliacirculansOX=1397GN=CEQ21_20635PE=4SV=1	tr|A0A553SLH6|A0A553SLH6_NIACISporulationproteinSpoOMOS=NialliacirculansOX=1397GN=CEQ21_20635PE=4SV=1	tr|A0A553SLH6|A0A553SLH6_NIACISporulationproteinSpoOMOS=NialliacirculansOX=1397GN=CEQ21_20635PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	547.812513	1093.61047	-1.1781	-0.00064536	2.5048	0.0013722	1.3268	0.00072681	547.8138552310985	73.452	1.0015	70.056	69.833	70.834	-3.3961	0.19251	0.00037292	NaN	67.494	51	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	478080			22361	33724	18298	18321							0.06741290408785972
KEAIETIVA	9	Unmodified	_KEAIETIVA_					0	0	0		DLGAP1-GNAS|20|fusion;DLGAP1-GNAS|17|fusion;DLGAP1-GNAS|18|fusion;DLGAP1-GNAS|19|fusion;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;DLGAP1-GNAS|21|fusion;DLGAP1-GNAS|14|fusion;DLGAP1-GNAS|15|fusion;ENSG00000087460|ENST00000371085|GNAS;DLGAP1-GNAS|23|fusion;SETD3-GNAS|1|fusion;SETD3-GNAS|4|fusion;DLGAP1-GNAS|3|fusion;SETD3-GNAS|2|fusion;SETD3-GNAS|3|fusion;nc|ENSG00000087460|P63092-4|GNAS;CADM1-GNAS|4|fusion;DLGAP1-GNAS|24|fusion;DLGAP1-GNAS|11|fusion;DLGAP1-GNAS|2|fusion;nc|ENSG00000087460|P63092-2|GNAS;DLGAP1-GNAS|10|fusion;DLGAP1-GNAS|13|fusion;DLGAP1-GNAS|16|fusion;DLGAP1-GNAS|1|fusion;DLGAP1-GNAS|4|fusion;DLGAP1-GNAS|7|fusion;DLGAP1-GNAS|9|fusion;DLGAP1-GNAS|6|fusion;DLGAP1-GNAS|12|fusion;DLGAP1-GNAS|5|fusion;DLGAP1-GNAS|8|fusion;DLGAP1-GNAS|22|fusion;CADM1-GNAS|1|fusion;SDCCAG8-GNAS|2|fusion;nc|ENSG00000087460|P63092-3|GNAS;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;SDCCAG8-GNAS|4|fusion;SDCCAG8-GNAS|1|fusion;CADM1-GNAS|2|fusion;CADM1-GNAS|3|fusion;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;SDCCAG8-GNAS|3|fusion;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000487981.5_1_20:57478601-57484479:+|nuORF;ENST00000494081.5_1_20:57478601-57480533:+|nuORF;GNAS|p.V117Rfs*23|1|0.06|ENSG00000087460|chr20:58903701-58903702|-/C|frameshift_variant;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS	DLGAP1-GNAS|20|fusion;nc|ENSG00000087460|Q5JWF2-2|GNAS	DLGAP1-GNAS|20|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.2825927734375	2	487.281857	972.549162	-0.11737	-5.7191E-05	-0.59864	-0.00029171	-0.71601	-0.0003489	487.2814079591091	79.145	1.4945	76.394	76.179	77.673	-2.7514					44	30	2	0	0	0	0.55011	1	6412	6412		37.812	2.1932	1	443170			22362	739;14909	18299	18322	24766	24766					0.061789208661252815
KEAIETIVA	9	Unmodified	_KEAIETIVA_					0	0	0		DLGAP1-GNAS|20|fusion;DLGAP1-GNAS|17|fusion;DLGAP1-GNAS|18|fusion;DLGAP1-GNAS|19|fusion;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;DLGAP1-GNAS|21|fusion;DLGAP1-GNAS|14|fusion;DLGAP1-GNAS|15|fusion;ENSG00000087460|ENST00000371085|GNAS;DLGAP1-GNAS|23|fusion;SETD3-GNAS|1|fusion;SETD3-GNAS|4|fusion;DLGAP1-GNAS|3|fusion;SETD3-GNAS|2|fusion;SETD3-GNAS|3|fusion;nc|ENSG00000087460|P63092-4|GNAS;CADM1-GNAS|4|fusion;DLGAP1-GNAS|24|fusion;DLGAP1-GNAS|11|fusion;DLGAP1-GNAS|2|fusion;nc|ENSG00000087460|P63092-2|GNAS;DLGAP1-GNAS|10|fusion;DLGAP1-GNAS|13|fusion;DLGAP1-GNAS|16|fusion;DLGAP1-GNAS|1|fusion;DLGAP1-GNAS|4|fusion;DLGAP1-GNAS|7|fusion;DLGAP1-GNAS|9|fusion;DLGAP1-GNAS|6|fusion;DLGAP1-GNAS|12|fusion;DLGAP1-GNAS|5|fusion;DLGAP1-GNAS|8|fusion;DLGAP1-GNAS|22|fusion;CADM1-GNAS|1|fusion;SDCCAG8-GNAS|2|fusion;nc|ENSG00000087460|P63092-3|GNAS;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;SDCCAG8-GNAS|4|fusion;SDCCAG8-GNAS|1|fusion;CADM1-GNAS|2|fusion;CADM1-GNAS|3|fusion;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;SDCCAG8-GNAS|3|fusion;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000487981.5_1_20:57478601-57484479:+|nuORF;ENST00000494081.5_1_20:57478601-57480533:+|nuORF;GNAS|p.V117Rfs*23|1|0.06|ENSG00000087460|chr20:58903701-58903702|-/C|frameshift_variant;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS	DLGAP1-GNAS|20|fusion;nc|ENSG00000087460|Q5JWF2-2|GNAS	DLGAP1-GNAS|20|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	487.281857	972.549162	0.12919	6.295E-05	0.3249	0.00015832	0.45408	0.00022127	487.2818840864366	78.314	1.5264	76.574	75.934	77.46	-1.7398	0.090092	0.00021985	NaN	37.812	55	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109410			22363	739;14909	18299	18322							0.061789208661252815
KEAIETIVAAM	11	Oxidation (M)	_KEAIETIVAAM(Oxidation (M))_		KEAIETIVAAM(1)		KEAIETIVAAM(99)	0	0	1		DLGAP1-GNAS|20|fusion;DLGAP1-GNAS|17|fusion;DLGAP1-GNAS|18|fusion;DLGAP1-GNAS|19|fusion;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;DLGAP1-GNAS|21|fusion;DLGAP1-GNAS|14|fusion;DLGAP1-GNAS|15|fusion;ENSG00000087460|ENST00000371085|GNAS;DLGAP1-GNAS|23|fusion;SETD3-GNAS|1|fusion;SETD3-GNAS|4|fusion;DLGAP1-GNAS|3|fusion;SETD3-GNAS|2|fusion;SETD3-GNAS|3|fusion;nc|ENSG00000087460|P63092-4|GNAS;CADM1-GNAS|4|fusion;DLGAP1-GNAS|24|fusion;DLGAP1-GNAS|11|fusion;DLGAP1-GNAS|2|fusion;nc|ENSG00000087460|P63092-2|GNAS;DLGAP1-GNAS|10|fusion;DLGAP1-GNAS|13|fusion;DLGAP1-GNAS|16|fusion;DLGAP1-GNAS|1|fusion;DLGAP1-GNAS|4|fusion;DLGAP1-GNAS|7|fusion;DLGAP1-GNAS|9|fusion;DLGAP1-GNAS|6|fusion;DLGAP1-GNAS|12|fusion;DLGAP1-GNAS|5|fusion;DLGAP1-GNAS|8|fusion;DLGAP1-GNAS|22|fusion;CADM1-GNAS|1|fusion;SDCCAG8-GNAS|2|fusion;nc|ENSG00000087460|P63092-3|GNAS;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;SDCCAG8-GNAS|4|fusion;SDCCAG8-GNAS|1|fusion;CADM1-GNAS|2|fusion;CADM1-GNAS|3|fusion;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;SDCCAG8-GNAS|3|fusion;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000487981.5_1_20:57478601-57484479:+|nuORF;ENST00000494081.5_1_20:57478601-57480533:+|nuORF;GNAS|p.V117Rfs*23|1|0.06|ENSG00000087460|chr20:58903701-58903702|-/C|frameshift_variant;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS	DLGAP1-GNAS|20|fusion;nc|ENSG00000087460|Q5JWF2-2|GNAS	DLGAP1-GNAS|20|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	596.3206176757812	2	596.318114	1190.62167	1.7949	0.0010703	-0.74649	-0.00044514	1.0484	0.00062519	596.3175264884217	85.178	1.1305	82.531	82.263	83.394	-2.6463					44	22	3	0	0	0	0.090942	1	7162	7162		99.013	50.411	1	260720			22364	739;14909	18300	18323	24767	24767		24			0.033988868773803915
KEAIETIVAAM	11	Oxidation (M)	_KEAIETIVAAM(Oxidation (M))_					0	0	1		DLGAP1-GNAS|20|fusion;DLGAP1-GNAS|17|fusion;DLGAP1-GNAS|18|fusion;DLGAP1-GNAS|19|fusion;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;DLGAP1-GNAS|21|fusion;DLGAP1-GNAS|14|fusion;DLGAP1-GNAS|15|fusion;ENSG00000087460|ENST00000371085|GNAS;DLGAP1-GNAS|23|fusion;SETD3-GNAS|1|fusion;SETD3-GNAS|4|fusion;DLGAP1-GNAS|3|fusion;SETD3-GNAS|2|fusion;SETD3-GNAS|3|fusion;nc|ENSG00000087460|P63092-4|GNAS;CADM1-GNAS|4|fusion;DLGAP1-GNAS|24|fusion;DLGAP1-GNAS|11|fusion;DLGAP1-GNAS|2|fusion;nc|ENSG00000087460|P63092-2|GNAS;DLGAP1-GNAS|10|fusion;DLGAP1-GNAS|13|fusion;DLGAP1-GNAS|16|fusion;DLGAP1-GNAS|1|fusion;DLGAP1-GNAS|4|fusion;DLGAP1-GNAS|7|fusion;DLGAP1-GNAS|9|fusion;DLGAP1-GNAS|6|fusion;DLGAP1-GNAS|12|fusion;DLGAP1-GNAS|5|fusion;DLGAP1-GNAS|8|fusion;DLGAP1-GNAS|22|fusion;CADM1-GNAS|1|fusion;SDCCAG8-GNAS|2|fusion;nc|ENSG00000087460|P63092-3|GNAS;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;SDCCAG8-GNAS|4|fusion;SDCCAG8-GNAS|1|fusion;CADM1-GNAS|2|fusion;CADM1-GNAS|3|fusion;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;SDCCAG8-GNAS|3|fusion;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000487981.5_1_20:57478601-57484479:+|nuORF;ENST00000494081.5_1_20:57478601-57480533:+|nuORF;GNAS|p.V117Rfs*23|1|0.06|ENSG00000087460|chr20:58903701-58903702|-/C|frameshift_variant;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS	DLGAP1-GNAS|20|fusion;nc|ENSG00000087460|Q5JWF2-2|GNAS	DLGAP1-GNAS|20|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	596.318114	1190.62167	-1.2984	-0.00077425	1.3309	0.00079367	0.032564	1.9418E-05	596.3186063426064	84.038	1.1301	82.492	81.974	83.104	-1.5462	-0.04339	0.0010277	NaN	99.013	55	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83292			22365	739;14909	18300	18323				24			0.033988868773803915
KEAIETIVAAM	11	Oxidation (M)	_KEAIETIVAAM(Oxidation (M))_					0	0	1		DLGAP1-GNAS|20|fusion;DLGAP1-GNAS|17|fusion;DLGAP1-GNAS|18|fusion;DLGAP1-GNAS|19|fusion;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;DLGAP1-GNAS|21|fusion;DLGAP1-GNAS|14|fusion;DLGAP1-GNAS|15|fusion;ENSG00000087460|ENST00000371085|GNAS;DLGAP1-GNAS|23|fusion;SETD3-GNAS|1|fusion;SETD3-GNAS|4|fusion;DLGAP1-GNAS|3|fusion;SETD3-GNAS|2|fusion;SETD3-GNAS|3|fusion;nc|ENSG00000087460|P63092-4|GNAS;CADM1-GNAS|4|fusion;DLGAP1-GNAS|24|fusion;DLGAP1-GNAS|11|fusion;DLGAP1-GNAS|2|fusion;nc|ENSG00000087460|P63092-2|GNAS;DLGAP1-GNAS|10|fusion;DLGAP1-GNAS|13|fusion;DLGAP1-GNAS|16|fusion;DLGAP1-GNAS|1|fusion;DLGAP1-GNAS|4|fusion;DLGAP1-GNAS|7|fusion;DLGAP1-GNAS|9|fusion;DLGAP1-GNAS|6|fusion;DLGAP1-GNAS|12|fusion;DLGAP1-GNAS|5|fusion;DLGAP1-GNAS|8|fusion;DLGAP1-GNAS|22|fusion;CADM1-GNAS|1|fusion;SDCCAG8-GNAS|2|fusion;nc|ENSG00000087460|P63092-3|GNAS;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;SDCCAG8-GNAS|4|fusion;SDCCAG8-GNAS|1|fusion;CADM1-GNAS|2|fusion;CADM1-GNAS|3|fusion;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;SDCCAG8-GNAS|3|fusion;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000487981.5_1_20:57478601-57484479:+|nuORF;ENST00000494081.5_1_20:57478601-57480533:+|nuORF;GNAS|p.V117Rfs*23|1|0.06|ENSG00000087460|chr20:58903701-58903702|-/C|frameshift_variant;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS	DLGAP1-GNAS|20|fusion;nc|ENSG00000087460|Q5JWF2-2|GNAS	DLGAP1-GNAS|20|fusion	MULTI-MATCH	OvCa9_classI_Rep3	3		2	596.318114	1190.62167	-0.25595	-0.00015263	-0.048844	-2.9127E-05	-0.30479	-0.00018175	596.3179168690332	84.843	0.98741	82.582	82.307	83.295	-2.261	0.047279	-0.00061793	NaN	99.013	53	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279910			22366	739;14909	18300	18323				24			0.033988868773803915
KEAILKDEI	9	Unmodified	_KEAILKDEI_					0	0	0		ENST00000528172.1_1_11:4232759-4233284:-|nuORF	ENST00000528172.1_1_11:4232759-4233284:-|nuORF	ENST00000528172.1_1_11:4232759-4233284:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	529.810546875	2	529.808239	1057.60193	-0.58449	-0.00030967	-1.5012	-0.00079536	-2.0857	-0.001105	529.807658457611	104.6	3.6666	104.6	104.15	107.82	0					240	84	6	0	0	0	0.3076	1	11838	11838		62.107	0	1	177490000			22367	13250	18301	18324	24768	24768					0.0754287892893899
KEAIVTSEEL	10	Unmodified	_KEAIVTSEEL_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;SPTAN1|p.Q1734Rfs*19|1|0.63|ENSG00000197694|chr9:128615697-128615725|CCAAGTAAAGGACAAGAGGGACACCATCA/-|frameshift_variant;SPTAN1|p.M1752Ifs*16|1|0.07|ENSG00000197694|chr9:128615752-128615753|-/TTCCTGAGTTCTTATG|frameshift_variant;SPTAN1|p.C956Afs*33|1|0.61|ENSG00000197694|chr9:128587691-128587691|C/-|frameshift_variant	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	OvCa99_classI_Rep5	1	559.80224609375	2	559.800611	1117.58667	0.69669	0.00039001	-1.5485	-0.00086685	-0.85181	-0.00047684	559.7997100916879	72.793	0.62103	72.793	72.574	73.195	0					46	14	4	0	0	0	0.042975	1	7106	7106		131.62	41.015	1	2752500			22368	8736	18302	18325	24769	24769					0.03257967341096446
KEAIVTSEEL	10	Unmodified	_KEAIVTSEEL_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;SPTAN1|p.Q1734Rfs*19|1|0.63|ENSG00000197694|chr9:128615697-128615725|CCAAGTAAAGGACAAGAGGGACACCATCA/-|frameshift_variant;SPTAN1|p.M1752Ifs*16|1|0.07|ENSG00000197694|chr9:128615752-128615753|-/TTCCTGAGTTCTTATG|frameshift_variant;SPTAN1|p.C956Afs*33|1|0.61|ENSG00000197694|chr9:128587691-128587691|C/-|frameshift_variant	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	559.800611	1117.58667	-0.058801	-3.2917E-05	-5.1479	-0.0028818	-5.2067	-0.0029147	560.2977489385642	74.773	1.3549	72.802	72.009	73.364	-1.9711	0.0045123	-0.0036242	NaN	131.62	63	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58865			22369	8736	18302	18325							0.03257967341096446
KEAKKRSIVN	10	Unmodified	_KEAKKRSIVN_					0	0	0			REV__tr|A0A7D6W1X6|A0A7D6W1X6_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04360PE=4SV=1	REV__tr|A0A7D6W1X6|A0A7D6W1X6_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04360PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	587.8138427734375	2	586.859129	1171.70371	-1.2079	-0.00070887	3.1758	0.0018637	1.9679	0.0011549	586.8616276017221	99.693	0.4057	97.368	97.212	97.617	-2.3253					9	7	2	0	0	0	0.027062	1	8912	8912		32.751	16.033	1	6654.7	+		22370	31891	18303	18326	24770	24770					0.12472170071373512
KEALLPLILMG	11	Unmodified	_KEALLPLILMG_					0	0	0		tr|A0A553SH25|A0A553SH25_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_12015PE=3SV=1	tr|A0A553SH25|A0A553SH25_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_12015PE=3SV=1	tr|A0A553SH25|A0A553SH25_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_12015PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	599.367919921875	2	599.36741	1196.72027	-0.67145	-0.00040245	1.4041	0.00084155	0.73261	0.0004391	599.368096544186	28.215	0.29911	28.215	28.041	28.34	0					9	5	2	0	0	0	0.70865	1	905	905		26.693	2.1737	1	97471			22371	33227	18304	18327	24771	24771					0.1297753491307958
KEALMNALK	9	Unmodified	_KEALMNALK_					0	0	0		tr|A0A7D6VTE9|A0A7D6VTE9_9CLOTATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10480PE=4SV=1	tr|A0A7D6VTE9|A0A7D6VTE9_9CLOTATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10480PE=4SV=1	tr|A0A7D6VTE9|A0A7D6VTE9_9CLOTATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10480PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	509.2925109863281	2	509.291702	1016.56885	0.091011	4.6351E-05	3.3693	0.0017159	3.4603	0.0017623	509.2933152466907	31.183	0.72789	31.183	30.93	31.658	0					30	14	3	0	0	0	0.19758	1	1260	1260		76.774	7.1465	1	351360			22372	35109	18305	18328	24772	24772					0.061229736052496264
KEAMQHFIK	9	Oxidation (M)	_KEAM(Oxidation (M))QHFIK_		KEAM(1)QHFIK		KEAM(41)QHFIK	0	0	1			REV__tr|A0A553SPA0|A0A553SPA0_NIACIUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=NialliacirculansOX=1397GN=murEPE=3SV=1	REV__tr|A0A553SPA0|A0A553SPA0_NIACIUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=NialliacirculansOX=1397GN=murEPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	574.3014526367188	2	574.300059	1146.58556	-1.0341	-0.00059388	3.0101	0.0017287	1.976	0.0011348	574.3016463834462	26.667	0.84893	26.667	26.492	27.341	0					25	16	2	0	0	0	0.51865	1	714	714		40.778	6.6056	1	210150	+		22373	30518	18306	18329	24773	24773		670			0.018134744912003953
KEAMQHFIK	9	Oxidation (M)	_KEAM(Oxidation (M))QHFIK_					0	0	1			REV__tr|A0A553SPA0|A0A553SPA0_NIACIUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=NialliacirculansOX=1397GN=murEPE=3SV=1	REV__tr|A0A553SPA0|A0A553SPA0_NIACIUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=NialliacirculansOX=1397GN=murEPE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	574.300059	1146.58556	-1.0341	-0.00059388	3.0101	0.0017287	1.976	0.0011348	574.3016463834462	26.667	0.84893	26.667	26.492	27.341	0	0	0	NaN	40.778	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210150	+		22374	30518	18306	18329				670			0.018134744912003953
KEAPEEAQL	9	Unmodified	_KEAPEEAQL_					0	0	0		ENSG00000157637|ENST00000374759|SLC38A10;nc|ENSG00000157637|Q9HBR0-3|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	MULTI-MSMS	OvCa99_classI_Rep5	1	507.7602233886719	2	507.758746	1013.50294	-0.23202	-0.00011781	0.14846	7.5382E-05	-0.083558	-4.2427E-05	507.7586934420825	51.016	0.72945	51.016	50.775	51.504	0					42	16	4	0	0	0	0.043101	1	3923	3923		124.08	5.337	1	4646500			22375	5906	18307	18330	24774	24774					-0.00327144035964011
KEAQDLTKL	9	Unmodified	_KEAQDLTKL_					0	0	0		ENSG00000215421|ENST00000299687|ZNF407;ZNF407|p.R271Lfs*14|1|0.33|ENSG00000215421|chr18:74631831-74631831|G/-|frameshift_variant;nc|ENSG00000215421|Q9C0G0-2|ZNF407;nc|ENSG00000215421|Q9C0G0-3|ZNF407	ENSG00000215421|ENST00000299687|ZNF407;nc|ENSG00000215421|Q9C0G0-3|ZNF407	ENSG00000215421|ENST00000299687|ZNF407	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.3015747070312	2	523.298039	1044.58152	0.90636	0.0004743	1.2033	0.0006297	2.1097	0.001104	523.2982485654134	85.406	1.5773	82.76	82.215	83.792	-2.6463					73	31	3	0	0	0	0.10502	1	7174	7174		95.815	2.6719	1	245230			22376	9206;15315	18308	18331	24775	24775					0.061017082691250835
KEAQDLTKL	9	Unmodified	_KEAQDLTKL_					0	0	0		ENSG00000215421|ENST00000299687|ZNF407;ZNF407|p.R271Lfs*14|1|0.33|ENSG00000215421|chr18:74631831-74631831|G/-|frameshift_variant;nc|ENSG00000215421|Q9C0G0-2|ZNF407;nc|ENSG00000215421|Q9C0G0-3|ZNF407	ENSG00000215421|ENST00000299687|ZNF407;nc|ENSG00000215421|Q9C0G0-3|ZNF407	ENSG00000215421|ENST00000299687|ZNF407	MULTI-MATCH	OvCa9_classI_Rep2	2		2	523.298039	1044.58152	-0.70951	-0.00037128	0.133	6.9598E-05	-0.57651	-0.00030169	523.2978308915156	84.177	1.9691	82.63	82.023	83.992	-1.5462	-0.088955	-0.00041388	NaN	95.815	90	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195190			22377	9206;15315	18308	18331							0.061017082691250835
KEAQDLTKL	9	Unmodified	_KEAQDLTKL_					0	0	0		ENSG00000215421|ENST00000299687|ZNF407;ZNF407|p.R271Lfs*14|1|0.33|ENSG00000215421|chr18:74631831-74631831|G/-|frameshift_variant;nc|ENSG00000215421|Q9C0G0-2|ZNF407;nc|ENSG00000215421|Q9C0G0-3|ZNF407	ENSG00000215421|ENST00000299687|ZNF407;nc|ENSG00000215421|Q9C0G0-3|ZNF407	ENSG00000215421|ENST00000299687|ZNF407	MULTI-MATCH	OvCa9_classI_Rep3	3		2	523.298039	1044.58152	-1.2886	-0.0006743	1.0513	0.00055016	-0.23723	-0.00012414	523.2982781599769	84.988	1.7891	82.768	82.398	84.187	-2.2204	0.048727	0.00054724	NaN	95.815	76	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	618040			22378	9206;15315	18308	18331							0.061017082691250835
KEAQSFNIVN	10	Unmodified	_KEAQSFNIVN_					0	0	0			REV__ENST00000525549.5_1_11:59945684-59950490:-|nuORF	REV__ENST00000525549.5_1_11:59945684-59950490:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	575.2974243164062	2	575.29857	1148.58259	-0.84795	-0.00048782	0.245	0.00014095	-0.60294	-0.00034687	575.2986924624174	97.666	0.7856	96.707	96.365	97.15	-0.95856					51	15	4	0	0	0	0.45822	1	8854	8854		60.118	1.8883	1	1043800	+		22379	17969	18309	18332	24776	24776					0.014239226380595937
KEARATLS	8	Unmodified	_KEARATLS_					0	0	0			REV__nc|ENSG00000182872|P98175-5|RBM10	REV__nc|ENSG00000182872|P98175-5|RBM10	MULTI-MSMS	OvCa9_classI_Rep4_	4	438.2506103515625	2	438.250892	874.48723	-0.59791	-0.00026204	0.25648	0.0001124	-0.34143	-0.00014963	438.2509557447157	40.557	1.9268	37.603	37.315	39.242	-2.9541					110	36	5	0	0	0	0.53252	1	1742	1742		74.255	5.4682	1	1459300	+		22380	29044	18310	18333	24777	24777					0.04496614237655194
KEARKSRR	8	Unmodified	_KEARKSRR_					0	0	0		ENST00000345084.9_1_2:95774039-95774105:-|nuORF	ENST00000345084.9_1_2:95774039-95774105:-|nuORF	ENST00000345084.9_1_2:95774039-95774105:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.29150390625	2	515.815056	1029.61556	-0.0073543	-3.7934E-06	2.8271	0.0014583	2.8198	0.0014545	515.8161824787092	52.719	0.3944	52.719	52.478	52.873	0					13	8	2	0	0	0	0.028476	1	4128	4128		39.253	0	1	287080			22381	10618	18311	18334	24778	24778					0.10193594271413531
KEATAQKINA	10	Unmodified	_KEATAQKINA_					0	0	0			REV__nc|ENSG00000127328|Q96QF0-8|RAB3IP	REV__nc|ENSG00000127328|Q96QF0-8|RAB3IP	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.7835083007812	2	537.301113	1072.58767	-0.43508	-0.00023377	-0.0072663	-3.9042E-06	-0.44235	-0.00023768	537.3011334203695	48.225	0.42711	48.225	48.028	48.455	0					15	9	2	0	0	0	0.026522	1	3522	3522		75.043	2.1641	1	287760	+		22382	18809	18312	18335	24779	24779					0.05428226500657729
KEATIPGHL	9	Unmodified	_KEATIPGHL_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-4|FN1;nc|ENSG00000115414|P02751-12|FN1;FN1-SEC31A|2|fusion;FN1|p.E1684*|1|0.04|ENSG00000115414|chr2:215380922-215380923|-/A|frameshift_variant;FN1-SEC31A|1|fusion	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	OvCa99_classI_Rep5	1	483.2756042480469	2	483.274367	964.53418	0.032406	1.5661E-05	-0.33004	-0.0001595	-0.29763	-0.00014384	483.2741230157146	52.895	0.73548	52.895	52.653	53.389	0					33	16	3	0	0	0	0.042513	1	4172	4172		124.59	45.143	1	1631100			22383	3093	18313	18336	24780	24780					0.05049473788801606
KEAVQWEP	8	Unmodified	_KEAVQWEP_					0	0	0		nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9	nc|ENSG00000088387|Q9BZ29-3|DOCK9	nc|ENSG00000088387|Q9BZ29-3|DOCK9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.76666259765625	2	493.750724	985.486896	1.4964	0.00073886	3.9654	0.0019579	5.4619	0.0026968	493.75295862900686	67.896	0.29263	64.405	64.186	64.478	-3.4902					7	5	2	0	0	0	0.028476	1	4994	4994		51.193	15.574	1	23939			22384	14911	18314	18337	24781	24781					-0.006428054821981277
KECCKAFNK	9	Unmodified	_KECCKAFNK_					0	0	0		ENSG00000181450|ENST00000343776|ZNF678	ENSG00000181450|ENST00000343776|ZNF678	ENSG00000181450|ENST00000343776|ZNF678	MULTI-MSMS	OvCa99_classI_Rep5	1	535.759033203125	2	535.759712	1069.50487	-0.36887	-0.00019763	-0.96255	-0.0005157	-1.3314	-0.00071333	535.7590961035064	29.556	0.498	29.556	29.387	29.885	0					23	9	4	0	0	0	0.19758	1	1058	1058		76.774	1.7308	1	539310			22385	7931	18315	18338	24782	24782					-0.02710129823344687
KECLSCPKL	9	2 Carbamidomethyl (C)	_KEC(Carbamidomethyl (C))LSC(Carbamidomethyl (C))PKL_	KEC(1)LSC(1)PKL		KEC(72)LSC(72)PKL		0	2	0			REV__nc|ENSG00000198625|O15151-5|MDM4	REV__nc|ENSG00000198625|O15151-5|MDM4	MULTI-MSMS	OvCa99_classI_Rep5	1	567.7865600585938	2	567.785927	1133.5573	-0.07374	-4.1869E-05	-0.69976	-0.00039731	-0.7735	-0.00043918	567.7854051399036	47.401	0.5197	47.401	47.076	47.595	0					23	11	3	0	0	0	0.22621	1	3415	3415		71.877	9.7701	1	834160	+		22386	23037	18316	18339	24783	24783	269;270				-0.004135914804010099
KEDAGNKELF	10	Unmodified	_KEDAGNKELF_					0	0	0			REV__nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	REV__nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	MULTI-MSMS	OvCa99_classI_Rep5	1	575.7922973632812	2	575.790578	1149.5666	2.1964	0.0012647	0.55955	0.00032218	2.756	0.0015869	575.7908057718797	106.41	0.79149	106.41	106.1	106.89	0					47	17	5	0	0	0	0.25842	1	11970	11970		85.862	6.1492	1	3296800	+		22387	21637	18317	18340	24784	24784					-0.002197835988681618
KEDAGNKELF	10	Unmodified	_KEDAGNKELF_					0	0	0			REV__nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	REV__nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	575.790578	1149.5666	2.1964	0.0012647	0.55955	0.00032218	2.756	0.0015869	575.7908057718797	106.41	0.79149	106.41	106.1	106.89	0	0	0	NaN	85.862	47	17	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3296800	+		22388	21637	18317	18340							-0.002197835988681618
KEDAQEVEL	9	Unmodified	_KEDAQEVEL_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	OvCa99_classI_Rep5	1	530.7625122070312	2	530.761486	1059.50842	-0.36607	-0.00019429	0.4889	0.00025949	0.12284	6.5197E-05	530.761601913546	61.846	0.66813	61.846	61.585	62.253	0					42	15	4	0	0	0	0.070405	1	5478	5478		107.01	16.638	1	3056600			22389	4035	18318	18341	24785	24785					-0.01895465244137995
KEDARKKVQ	9	Unmodified	_KEDARKKVQ_					0	0	0		nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;CDK5RAP2|p.Y1498Gfs*4|1|0.29|ENSG00000136861|chr9:120409227-120409240|TCACGCTGGCATAC/-|frameshift_variant;ENST00000472883.1_1_9:123290187-123301393:-|nuORF	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.8069458007812	2	551.32238	1100.63021	-0.66758	-0.00036805	-0.18238	-0.00010055	-0.84997	-0.00046861	551.3211588186186	44.604	0.35441	44.604	44.44	44.795	0					17	7	3	0	0	0	0.027425	1	3016	3016		69.628	6.3214	1	399990			22390	4524	18319	18342	24786	24786					0.08391621628902612
KEDEDDKTVL	10	Unmodified	_KEDEDDKTVL_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;nc|ENSG00000259706|Q58FF3|HSP90B2P	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	OvCa99_classI_Rep5	1	596.2907104492188	2	596.290608	1190.56666	-0.46514	-0.00027736	-0.17171	-0.00010239	-0.63685	-0.00037975	596.2904986351949	41.659	1.596	41.659	41.33	42.926	0					107	36	5	0	0	0	0.0091683	3	2602	2602;2626;2651		160.82	78.581	1	13849000			22391	6697	18320	18343	24787;24788;24789	24787					-0.020998283895323766
KEDEDDKTVL	10	Unmodified	_KEDEDDKTVL_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;nc|ENSG00000259706|Q58FF3|HSP90B2P	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	596.290608	1190.56666	-0.35877	-0.00021393	2.7725	0.0016532	2.4137	0.0014393	596.2926045571895	44.767	0.29752	42.057	41.901	42.199	-2.7097	0.21533	0.00332	NaN	160.82	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6952.4			22392	6697	18320	18343							-0.020998283895323766
KEDEDDKTVL	10	Unmodified	_KEDEDDKTVL_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;nc|ENSG00000259706|Q58FF3|HSP90B2P	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	596.290608	1190.56666	-0.63527	-0.00037881	3.3005	0.0019681	2.6652	0.0015893	596.292833846941	44.847	0.25388	41.809	41.613	41.867	-3.0385	-0.032765	0.0039497	NaN	160.82	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18484			22393	6697	18320	18343							-0.020998283895323766
KEDEDIYKL	9	Unmodified	_KEDEDIYKL_					0	0	0		ENSG00000145632|ENST00000274289|PLK2;ENST00000502671.5_1_5:57749965-57753328:-|nuORF	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	OvCa99_classI_Rep5	1	576.7947387695312	2	576.792786	1151.57102	-1.0691	-0.00061666	0.50981	0.00029406	-0.55931	-0.00032261	576.7929774553802	66.142	0.54491	66.142	65.867	66.412	0					41	13	4	0	0	0	0.015737	1	6112	6112		152.06	55.87	1	4240700			22394	5233	18321	18344	24790	24790					0.0012968082405677706
KEDEKKKKK	9	Unmodified	_KEDEKKKKK_					0	0	0		nc|ENSG00000080493|Q9Y6R1-4|SLC4A4;nc|ENSG00000080493|Q9Y6R1-2|SLC4A4;ENSG00000080493|ENST00000264485|SLC4A4;nc|ENSG00000080493|Q9Y6R1-5|SLC4A4	nc|ENSG00000080493|Q9Y6R1-4|SLC4A4	nc|ENSG00000080493|Q9Y6R1-4|SLC4A4	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.3026123046875	2	580.853512	1159.69247	-1.2624	-0.0007333	1.601	0.00092997	0.33859	0.00019667	580.854061218765	43.554	0.38224	43.554	43.312	43.694	0					12	8	2	0	0	0	0.027462	1	2878	2878		47.657	5.2612	1	65942			22395	1635	18322	18345	24791	24791					0.11901347977209298
KEDENTKAI	9	Unmodified	_KEDENTKAI_					0	0	0		tr|A0A553STK4|A0A553STK4_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05045PE=3SV=1	tr|A0A553STK4|A0A553STK4_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05045PE=3SV=1	tr|A0A553STK4|A0A553STK4_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05045PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	524.2689819335938	2	524.269478	1046.5244	0.11207	5.8753E-05	-0.31648	-0.00016592	-0.20441	-0.00010717	524.2692040888927	45.78	0.91582	45.78	45.54	46.456	0					44	20	4	0	0	0	0.051592	1	3185	3185		117.81	5.4001	1	2282800			22396	34499	18323	18346	24792	24792					0.0030024099276033667
KEDFEKVIL	9	Unmodified	_KEDFEKVIL_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	OvCa99_classI_Rep5	1	560.818359375	2	560.816064	1119.61758	2.7015	0.0015151	1.8361	0.0010297	4.5376	0.0025448	560.8168474563788	83.944	1.7077	83.944	83.419	85.127	0					124	40	6	0	0	0	0.14855	2	8741	8741;8766		85.161	10.118	1	7679100			22397	4501	18324	18347	24793;24794	24793					0.06255165445986677
KEDGAISTIVL	11	Unmodified	_KEDGAISTIVL_					0	0	0		nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8	nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-3|CCT8	MULTI-MSMS	OvCa9_classI_Rep4_	4	573.3197021484375	2	573.324254	1144.63395	-0.86338	-0.000495	0.63572	0.00036447	-0.22766	-0.00013052	573.324406473378	103.89	1.3112	101.77	101.38	102.69	-2.1192					63	24	4	0	0	0	0.12738	2	9387	9387;9399		91.265	8.036	1	527440			22398	5830	18325	18348	24795;24796	24795					0.0674224661208882
KEDGTLETL	9	Unmodified	_KEDGTLETL_					0	0	0		ENSG00000155393|ENST00000299192|HEATR3;nc|ENSG00000155393|Q7Z4Q2-2|HEATR3	ENSG00000155393|ENST00000299192|HEATR3	ENSG00000155393|ENST00000299192|HEATR3	MULTI-MSMS	OvCa99_classI_Rep5	1	503.2586975097656	2	503.258579	1004.50261	0.48509	0.00024413	-1.1428	-0.00057514	-0.65773	-0.00033101	503.2578950981166	66.8	0.48263	66.8	66.531	67.014	0					26	11	3	0	0	0	0.045281	1	6212	6212		122.18	23.547	1	2677900			22399	5783	18326	18349	24797	24797					0.0005343624420675042
KEDIHNRH	8	Unmodified	_KEDIHNRH_					0	0	0		ENSG00000185222|ENST00000372661|TCEAL9	ENSG00000185222|ENST00000372661|TCEAL9	ENSG00000185222|ENST00000372661|TCEAL9	MULTI-MSMS	OvCa99_classI_Rep5	1	524.7665405273438	2	524.767771	1047.52099	-0.87296	-0.0004581	-0.78274	-0.00041076	-1.6557	-0.00086886	524.7672792207989	38.137	0.63491	38.137	37.896	38.531	0					26	13	2	0	0	0	0.45246	1	2148	2148		82.305	1.8504	1	795630			22400	8234	18327	18350	24798	24798					-0.0008696427059931011
KEDIPRQL	8	Unmodified	_KEDIPRQL_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	OvCa99_classI_Rep5	1	499.786376953125	2	499.785099	997.555644	-0.75651	-0.00037809	0.60204	0.00030089	-0.15446	-7.7198E-05	499.7853060674887	53.541	0.97595	53.541	52.915	53.891	0					44	22	4	0	0	0	0.34187	1	4259	4259		99.375	11.621	1	3412400			22401	1368	18328	18351	24799	24799					0.056768588175032164
KEDKVEKLQ	9	Unmodified	_KEDKVEKLQ_					0	0	0		ENST00000496278.1_1_1:46120199-46120481:-|nuORF;ENSG00000159592|ENST00000355105|GPBP1L1	ENST00000496278.1_1_1:46120199-46120481:-|nuORF	ENST00000496278.1_1_1:46120199-46120481:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.3189086914062	2	558.816596	1115.61864	-1.2683	-0.00070874	-4.141	-0.0023141	-5.4093	-0.0030228	558.8137783415513	49.508	1.2996	46.366	45.78	47.079	-3.1416					39	24	2	0	0	0	0.19758	1	2777	2777		76.774	7.1465	1	321950			22402	6018	18329	18352	24800	24800					0.06545379814906482
KEDKVEKLQ	9	Unmodified	_KEDKVEKLQ_					0	0	0		ENST00000496278.1_1_1:46120199-46120481:-|nuORF;ENSG00000159592|ENST00000355105|GPBP1L1	ENST00000496278.1_1_1:46120199-46120481:-|nuORF	ENST00000496278.1_1_1:46120199-46120481:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	558.816596	1115.61864	-0.36154	-0.00020203	-4.8768	-0.0027252	-5.2383	-0.0029272	558.8134088759881	49.223	1.1395	46.463	45.729	46.868	-2.7603	0.048071	-0.00032467	NaN	76.774	29	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90067			22403	6018	18329	18352							0.06545379814906482
KEDLGKKIAL	10	Unmodified	_KEDLGKKIAL_					0	0	0		nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A	nc|ENSG00000138674|O94979-8|SEC31A	nc|ENSG00000138674|O94979-8|SEC31A	MULTI-MSMS	OvCa99_classI_Rep5	1	557.8464965820312	2	557.845156	1113.67576	-0.10841	-6.0476E-05	0.091164	5.0855E-05	-0.017247	-9.6211E-06	557.8450261655752	54.653	0.60053	54.653	54.422	55.023	0					32	13	3	0	0	0	0.048965	1	4423	4423		129.42	11.61	1	2024400			22404	4710	18330	18353	24801	24801					0.12346847091248492
KEDLLERSL	9	Unmodified	_KEDLLERSL_					0	0	0			REV__nc|ENSG00000219481|Q3BBV0|NBPF1;REV__ENSG00000270629|ENST00000619423|NBPF14	REV__nc|ENSG00000219481|Q3BBV0|NBPF1	MSMS	OvCa99_classI_Rep5	1	551.8104248046875	2	551.808771	1101.60299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.016	1	67.016	66.516	67.516	0								0	0	0	0.062836	1	6246	6246		76.17	3.9264	1		+		22405	23333;23605	18331	18354	24802	24802					0.05625093297862804
KEDLRLALK	9	Unmodified	_KEDLRLALK_					0	0	0		ENST00000464800.5_1_13:113718626-113724520:+|nuORF;nc|ENSG00000126217|O15068-5|MCF2L;nc|ENSG00000126217|O15068-4|MCF2L;nc|ENSG00000126217|O15068-3|MCF2L;nc|ENSG00000126217|O15068-2|MCF2L;nc|ENSG00000126217|O15068-6|MCF2L;nc|ENSG00000126217|O15068-8|MCF2L;nc|ENSG00000126217|O15068-10|MCF2L;ENSG00000126217|ENST00000535094|MCF2L;nc|ENSG00000126217|O15068|MCF2L	ENST00000464800.5_1_13:113718626-113724520:+|nuORF	ENST00000464800.5_1_13:113718626-113724520:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.323486328125	2	543.337498	1084.66044	-0.5683	-0.00030878	-0.71836	-0.00039031	-1.2867	-0.00069909	543.3368313722725	75.064	0.91763	71.833	71.483	72.4	-3.2308					42	18	3	0	0	0	0.027462	1	5914	5914		47.657	11.211	1	66130			22406	3771	18332	18355	24803	24803					0.12149980294043417
KEDLRVLM	8	Oxidation (M)	_KEDLRVLM(Oxidation (M))_		KEDLRVLM(1)		KEDLRVLM(77)	0	0	1		ENSG00000197747|ENST00000368811|S100A10;ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF	ENSG00000197747|ENST00000368811|S100A10	ENSG00000197747|ENST00000368811|S100A10	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.28125	2	510.281334	1018.54812	-0.48424	-0.0002471	-0.61366	-0.00031314	-1.0979	-0.00056023	510.28101873995524	62.643	1.8395	59.185	58.475	60.315	-3.4577					72	37	3	0	0	0	0.50747	1	4359	4359		76.774	13.468	1	507010			22407	8743	18333	18356	24804	24804		264			0.039583832255971174
KEDMSNKKL	9	Unmodified	_KEDMSNKKL_					0	0	0		tr|A0A7D6ZTW4|A0A7D6ZTW4_9CLOTDUF4065domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19135PE=4SV=1	tr|A0A7D6ZTW4|A0A7D6ZTW4_9CLOTDUF4065domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19135PE=4SV=1	tr|A0A7D6ZTW4|A0A7D6ZTW4_9CLOTDUF4065domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19135PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	546.7940673828125	2	546.789524	1091.56449	-1.2718	-0.00069542	-2.3811	-0.001302	-3.653	-0.0019974	546.7881137926465	69.987	1.2471	69.987	69.475	70.722	0					89	30	4	0	0	0	0.1149	1	6708	6708		93.143	10.393	1	18649000			22408	35760	18334	18357	24805	24805					0.022374643916919013
KEDMSNKKL	9	Unmodified	_KEDMSNKKL_					0	0	0		tr|A0A7D6ZTW4|A0A7D6ZTW4_9CLOTDUF4065domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19135PE=4SV=1	tr|A0A7D6ZTW4|A0A7D6ZTW4_9CLOTDUF4065domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19135PE=4SV=1	tr|A0A7D6ZTW4|A0A7D6ZTW4_9CLOTDUF4065domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19135PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	546.789524	1091.56449	0.051452	2.8134E-05	-3.1664	-0.0017313	-3.1149	-0.0017032	546.7875791309233	72.666	1.6225	70.266	70.011	71.633	-2.3999	0.13954	-0.00044163	NaN	93.143	66	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175940			22409	35760	18334	18357							0.022374643916919013
KEDPATQTNL	10	Unmodified	_KEDPATQTNL_					0	0	0		ENST00000502797.1_1_4:56269487-56278062:+|nuORF;nc|ENSG00000134851|Q9HC07-2|TMEM165;ENST00000508404.5_1_4:56269487-56291616:+|nuORF;ENSG00000134851|ENST00000381334|TMEM165	ENST00000502797.1_1_4:56269487-56278062:+|nuORF	ENST00000502797.1_1_4:56269487-56278062:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	558.7827758789062	2	558.78021	1115.54587	0.083381	4.6591E-05	0.2072	0.00011578	0.29058	0.00016237	558.7797105697206	49.106	0.5227	49.106	48.895	49.418	0					28	11	4	0	0	0	0.18515	1	3656	3656		96.665	19.891	1	685700			22410	4337	18335	18358	24806	24806					-0.007283739785407306
KEDPEKGAL	9	Unmodified	_KEDPEKGAL_					0	0	0		ENST00000593845.5_1_19:15510111-15529746:-|nuORF;nc|ENSG00000011243|Q9ULX6-2|AKAP8L;ENSG00000011243|ENST00000397410|AKAP8L;AKAP8L|p.G343C|1|0.36|ENSG00000011243|chr19:15400316-15400316|C/A|missense_variant	ENST00000593845.5_1_19:15510111-15529746:-|nuORF	ENST00000593845.5_1_19:15510111-15529746:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	493.76104736328125	2	493.761289	985.508025	-0.84045	-0.00041498	0.56794	0.00028042	-0.27251	-0.00013456	493.7613959937966	39.689	0.55517	39.689	39.505	40.06	0					29	12	4	0	0	0	0.094791	1	2353	2353		98.582	2.5484	1	942280			22411	958	18336	18359	24807	24807					0.014691598266608707
KEDPFVFIP	9	Unmodified	_KEDPFVFIP_					0	0	0		nc|ENSG00000037474|Q08J23-3|NSUN2;NSUN2|p.K565Gfs*9|1|0.04|ENSG00000037474|chr5:6605316-6605317|TT/-|frameshift_variant;NSUN2|p.A684Rfs*11|1|0.06|ENSG00000037474|chr5:6600180-6600181|-/G|frameshift_variant;nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	MULTI-MSMS	OvCa99_classI_Rep5	1	546.29345703125	2	546.292225	1090.5699	-0.55995	-0.0003059	3.3417	0.0018255	2.7817	0.0015196	546.2940943968722	24.481	0.29986	24.481	24.336	24.636	0					8	5	2	0	0	0	0.7044	1	458	458		16.473	0.83134	1	20674			22412	1090	18337	18360	24808	24808					0.028235112458105505
KEDPLPFEI	9	Unmodified	_KEDPLPFEI_					0	0	0			REV__ENST00000555787.1_1_14:90736495-90738748:+|nuORF	REV__ENST00000555787.1_1_14:90736495-90738748:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.2838134765625	2	544.28714	1086.55973	-0.68268	-0.00037157	-3.1437	-0.0017111	-3.8264	-0.0020827	544.2850841950847	128.09	0.92648	126.66	126.39	127.32	-1.4357					39	17	3	0	0	0	0.53483	1	12236	12236		39.253	1.4413	1	138610	+		22413	17450	18338	18361	24809	24809					0.019909035205728287
KEDPLPFEI	9	Unmodified	_KEDPLPFEI_					0	0	0			REV__ENST00000555787.1_1_14:90736495-90738748:+|nuORF	REV__ENST00000555787.1_1_14:90736495-90738748:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	544.28714	1086.55973	0.59772	0.00032533	-4.5577	-0.0024807	-3.96	-0.0021554	544.2844410605263	127.09	1.3826	126.85	126.59	127.97	-0.2359	0.11131	-0.00030305	NaN	39.253	56	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117620	+		22414	17450	18338	18361							0.019909035205728287
KEDPLPFEI	9	Unmodified	_KEDPLPFEI_					0	0	0			REV__ENST00000555787.1_1_14:90736495-90738748:+|nuORF	REV__ENST00000555787.1_1_14:90736495-90738748:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	544.28714	1086.55973	0.96792	0.00052683	-4.6709	-0.0025423	-3.7029	-0.0020155	544.2841586927113	127.8	0.80856	126.71	126.46	127.27	-1.0933	-0.03105	-0.00042618	NaN	39.253	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98252	+		22415	17450	18338	18361							0.019909035205728287
KEDPLPFEI	9	Unmodified	_KEDPLPFEI_					0	0	0			REV__ENST00000555787.1_1_14:90736495-90738748:+|nuORF	REV__ENST00000555787.1_1_14:90736495-90738748:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	544.28714	1086.55973	-0.68268	-0.00037157	-3.1437	-0.0017111	-3.8264	-0.0020827	544.2850841950847	128.09	0.92648	126.66	126.39	127.32	-1.4357	-0.080264	0.0012362	NaN	39.253	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138610	+		22416	17450	18338	18361							0.019909035205728287
KEDQEAEKL	9	Unmodified	_KEDQEAEKL_					0	0	0		ENSG00000132274|ENST00000379965|TRIM22;nc|ENSG00000132274|Q8IYM9-2|TRIM22;ENST00000480395.5_1_11:5717822-5718591:+|nuORF	ENSG00000132274|ENST00000379965|TRIM22	ENSG00000132274|ENST00000379965|TRIM22	MULTI-MSMS	OvCa99_classI_Rep5	1	545.2745971679688	2	545.274761	1088.53497	-0.032754	-1.786E-05	-1.0837	-0.00059094	-1.1165	-0.0006088	545.2744081912426	32.966	0.73529	32.966	32.748	33.483	0					57	14	6	0	0	0	0.0093989	2	1469	1469;1493		218.73	51.501	1	3467700			22417	4120	18339	18362	24810;24811	24810					-0.00575776352820867
KEDQEKKNI	9	Unmodified	_KEDQEKKNI_					0	0	0		ENSG00000157578|ENST00000288350|LCA5L	ENSG00000157578|ENST00000288350|LCA5L	ENSG00000157578|ENST00000288350|LCA5L	MULTI-MSMS	OvCa9_classI_Rep2	2	566.3028564453125	2	566.303852	1130.59315	-1.6717	-0.0009467	0.7735	0.00043804	-0.89822	-0.00050867	566.304456990032	38.168	0.84065	35.458	35.271	36.112	-2.7097					32	16	3	0	0	0	0.40818	1	1776	1776		51.193	1.6567	1	68343			22418	5902	18340	18363	24812	24812					0.033079052924676944
KEDRAAQSL	9	Unmodified	_KEDRAAQSL_					0	0	0		ENST00000570055.5_1_16:70328730-70353576:+|nuORF;nc|ENSG00000260537|Q9UMR2-4|DDX19B;ENST00000566167.5_1_16:70380803-70394746:+|nuORF;ENST00000562509.5_1_16:70380771-70390776:+|nuORF;ENST00000569244.6_1_16:70380819-70394746:+|nuORF;nc|ENSG00000260537|Q9UMR2-2|DDX19B;ENSG00000168872|ENST00000302243|DDX19A;ENSG00000157349|ENST00000288071|DDX19B;SF3B3-DDX19B|3|fusion;SF3B3-DDX19B|2|fusion	ENST00000570055.5_1_16:70328730-70353576:+|nuORF;SF3B3-DDX19B|3|fusion	SF3B3-DDX19B|3|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	509.2695617675781	2	509.269813	1016.52507	0.061275	3.1206E-05	-0.0010071	-5.1288E-07	0.060268	3.0693E-05	509.2696019596816	31.051	0.67835	31.051	30.831	31.509	0					24	13	3	0	0	0	0.14855	1	1243	1243		85.161	10.906	1	535360			22419	32815;13887	18341	18364	24813	24813					0.017470804324716482
KEDSDEVHL	9	Unmodified	_KEDSDEVHL_					0	0	0		nc|ENSG00000130592|P33241-2|LSP1;ENST00000485341.5_1_11:1902588-1908790:+|nuORF;ENSG00000130592|ENST00000311604|LSP1;nc|ENSG00000130592|P33241-3|LSP1	nc|ENSG00000130592|P33241-2|LSP1	nc|ENSG00000130592|P33241-2|LSP1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.2537231445312	2	536.251286	1070.48802	-0.0053031	-2.8438E-06	-1.1884	-0.00063726	-1.1937	-0.0006401	536.250415084313	46.831	1.1396	46.831	46.412	47.551	0					65	25	4	0	0	0	0.014964	2	3319	3319;3335		153.04	65.282	1	7780500			22420	3996	18342	18365	24814;24815	24814					-0.04440635903961265
KEDSGKIKL	9	Unmodified	_KEDSGKIKL_					0	0	0		nc|ENSG00000139154|Q6ZN18-3|AEBP2;ENSG00000139154|ENST00000266508|AEBP2;nc|ENSG00000139154|Q6ZN18|AEBP2	nc|ENSG00000139154|Q6ZN18-3|AEBP2	nc|ENSG00000139154|Q6ZN18-3|AEBP2	MULTI-MSMS	OvCa99_classI_Rep5	1	509.30035400390625	2	509.300581	1016.58661	-0.5815	-0.00029616	0.046938	2.3905E-05	-0.53456	-0.00027225	509.3005543977876	35.124	0.51717	35.124	34.957	35.475	0					23	10	3	0	0	0	0.1243	1	1752	1752		90.601	2.9044	1	616720			22421	4747	18343	18366	24816	24816					0.07898012131749965
KEDSKLIAL	9	Unmodified	_KEDSKLIAL_					0	0	0		nc|ENSG00000090686|Q86UV5-5|USP48;nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48	nc|ENSG00000090686|Q86UV5-5|USP48	nc|ENSG00000090686|Q86UV5-5|USP48	MULTI-MSMS	OvCa99_classI_Rep5	1	508.8046875	2	508.802957	1015.59136	0.0090899	4.625E-06	-0.052525	-2.6725E-05	-0.043435	-2.21E-05	508.8028425451489	68.841	0.7042	68.841	68.564	69.268	0					45	16	4	0	0	0	0.070405	1	6510	6510		107.01	20.073	1	3499200			22422	1846	18344	18367	24817	24817					0.08418896274520193
KEDTASEKL	9	Unmodified	_KEDTASEKL_					0	0	0		ENST00000483371.1_1_1:109171009-109177769:+|nuORF;nc|ENSG00000162636|Q5T8I3-2|EEIG2;ENSG00000162636|ENST00000370035|EEIG2	ENST00000483371.1_1_1:109171009-109177769:+|nuORF	ENST00000483371.1_1_1:109171009-109177769:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	510.7633056640625	2	510.764029	1019.5135	0.12132	6.1967E-05	0.040961	2.0921E-05	0.16228	8.2889E-05	510.7639494768904	31.534	0.59543	31.534	31.361	31.956	0					22	11	3	0	0	0	0.37182	1	1310	1310		54.722	8.7501	1	194430			22423	6208	18345	18368	24818	24818					0.004528386184802002
KEDTASEKL	9	Unmodified	_KEDTASEKL_					0	0	0		ENST00000483371.1_1_1:109171009-109177769:+|nuORF;nc|ENSG00000162636|Q5T8I3-2|EEIG2;ENSG00000162636|ENST00000370035|EEIG2	ENST00000483371.1_1_1:109171009-109177769:+|nuORF	ENST00000483371.1_1_1:109171009-109177769:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	510.764029	1019.5135	-1.4344	-0.00073266	2.6385	0.0013477	1.2041	0.00061499	510.76522356270266	34.085	0.24653	31.375	31.267	31.513	-2.7097	-0.079679	0.0018688	NaN	54.722	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10165			22424	6208	18345	18368							0.004528386184802002
KEDTEEHHL	9	Unmodified	_KEDTEEHHL_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|429|217.16|0.0|24.37|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000444886.1_1_9:128358162-128358726:+|nuORF;ENST00000510646.1_1_5:135764749-135765112:+|nuORF;ENST00000457695.2_1_X:100110922-100111255:-|nuORF;ENST00000458678.1_1_1:241083162-241083366:+|nuORF;ENST00000491091.1_1_3:122036542-122036854:+|nuORF;ENST00000523612.1_1_8:142469282-142469963:+|nuORF;ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000135486|ENST00000340913|HNRNPA1;ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	OvCa99_classI_Rep5	1	569.26220703125	2	569.262185	1136.50982	-0.846	-0.0004816	0.47889	0.00027261	-0.36711	-0.00020898	569.2624471698822	26.912	0.9992	26.912	26.692	27.691	0					50	19	5	0	0	0	0.026923	1	738	738		138.83	27.177	1	1908200			22425	3541;322	18346	18369	24819	24819					-0.05297831155394306
KEDTEEYNL	9	Unmodified	_KEDTEEYNL_					0	0	0		HNRNPA3-TSNARE1|1|fusion;ENST00000472163.1_1_3:75263799-75264780:+|nuORF;nc|ENSG00000170144|P51991-2|HNRNPA3;ENSG00000170144|ENST00000392524|HNRNPA3	HNRNPA3-TSNARE1|1|fusion	HNRNPA3-TSNARE1|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	570.7572631835938	2	570.756401	1139.49825	-0.26095	-0.00014894	-0.10123	-5.7777E-05	-0.36217	-0.00020671	570.7562639032707	61.093	0.96696	61.093	60.859	61.826	0					54	22	4	0	0	0	0.03923	2	5380	5359;5380		127.46	26.705	1	5487800			22426	14485	18347	18370	24820;24821	24821					-0.06592072969374385
KEDTPVRHL	9	Unmodified	_KEDTPVRHL_					0	0	0		ENSG00000180964|ENST00000372685|TCEAL8	ENSG00000180964|ENST00000372685|TCEAL8	ENSG00000180964|ENST00000372685|TCEAL8	MULTI-MSMS	OvCa99_classI_Rep5	1	547.8006591796875	2	547.80128	1093.58801	-1.2341	-0.00067606	0.60609	0.00033202	-0.62804	-0.00034404	547.8017124175196	34.468	0.79573	34.468	34.209	35.004	0					34	16	3	0	0	0	0.1804	1	1662	1662		79.713	13.283	1	836360			22427	7905	18348	18371	24822	24822					0.044956462205163916
KEDTVTEKL	9	Unmodified	_KEDTVTEKL_					0	0	0		nc|ENSG00000151116|Q8IX04-6|UEVLD;ENSG00000151116|ENST00000396197|UEVLD	nc|ENSG00000151116|Q8IX04-6|UEVLD	nc|ENSG00000151116|Q8IX04-6|UEVLD	MULTI-MSMS	OvCa99_classI_Rep5	1	531.7876586914062	2	531.787504	1061.56045	-0.6872	-0.00036545	0.044056	2.3429E-05	-0.64315	-0.00034202	531.7873468178685	43.457	0.51017	43.457	43.27	43.78	0					26	11	3	0	0	0	0.1243	1	2870	2870		90.601	5.6853	1	987470			22428	5533	18349	18372	24823	24823					0.03213698169611234
KEEALSLISL	10	Unmodified	_KEEALSLISL_					0	0	0			REV__XPO1-USP34|3|fusion	REV__XPO1-USP34|3|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.7928466796875	2	551.821347	1101.62814	1.9944	0.0011006	0.2137	0.00011792	2.2081	0.0012185	552.3226922529124	85.043	0.41074	85.043	84.841	85.252	0					13	9	2	0	0	0	0.027632	1	8882	8882		98.629	8.2596	1	164470	+		22429	32759	18350	18373	24824	24824					0.08139148100440252
KEEATALLR	9	Unmodified	_KEEATALLR_					0	0	0		nc|ENSG00000088970|Q2M2Z5-5|KIZ;nc|ENSG00000088970|Q2M2Z5-2|KIZ;nc|ENSG00000088970|Q2M2Z5-3|KIZ;KIZ|p.S616Rfs*21|1|0.21|ENSG00000088970|chr20:21232797-21232798|-/GC|frameshift_variant;nc|ENSG00000088970|Q2M2Z5-4|KIZ;ENSG00000088970|ENST00000619189|KIZ	nc|ENSG00000088970|Q2M2Z5-5|KIZ	nc|ENSG00000088970|Q2M2Z5-5|KIZ	MULTI-MSMS	OvCa99_classI_Rep5	1	515.7976684570312	2	515.798206	1029.58186	-0.67527	-0.0003483	-0.0031406	-1.6199E-06	-0.67841	-0.00034992	515.7983304256654	55.479	0.90431	55.479	55.107	56.011	0					58	21	5	0	0	0	0.10502	1	4531	4531		95.815	2.6197	1	5678800			22430	1800	18351	18374	24825	24825					0.06825127988986424
KEEATRRP	8	Unmodified	_KEEATRRP_					0	0	0			REV__ENST00000489228.1_1_6:50789578-50789641:+|nuORF	REV__ENST00000489228.1_1_6:50789578-50789641:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	493.7720947265625	2	493.772522	985.530492	-1.0638	-0.00052526	0.75916	0.00037485	-0.30461	-0.00015041	493.7727477458053	34.251	1.0885	31.542	31.168	32.257	-2.7097					41	21	3	0	0	0	0.73205	1	1301	1301		35.618	3.6634	1	147330	+		22431	26634	18352	18375	24826	24826					0.03714804014953188
KEEDLSRQL	9	Unmodified	_KEEDLSRQL_					0	0	0			REV__ENSG00000150636|ENST00000360242|CCDC102B	REV__ENSG00000150636|ENST00000360242|CCDC102B	MULTI-MSMS	OvCa99_classI_Rep5	1	559.2938842773438	2	559.296027	1116.5775	-0.069229	-3.872E-05	-0.43737	-0.00024462	-0.5066	-0.00028334	559.2957314420024	38.136	0.63491	38.136	37.896	38.531	0					39	13	4	0	0	0	0.16562	2	2135	2135;2162		82.241	13.394	1	1781600	+		22432	20198	18353	18376	24827;24828	24827					0.023876187754240163
KEEDLSRQL	9	Unmodified	_KEEDLSRQL_					0	0	0			REV__ENSG00000150636|ENST00000360242|CCDC102B	REV__ENSG00000150636|ENST00000360242|CCDC102B	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	559.296027	1116.5775	0.077837	4.3534E-05	-0.23749	-0.00013282	-0.15965	-8.9291E-05	559.2954045002803	40.846	0.36359	37.892	37.737	38.101	-2.9541	-0.1221	0.00021568	NaN	82.241	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15819	+		22433	20198	18353	18376							0.023876187754240163
KEEDSHTTL	9	Unmodified	_KEEDSHTTL_					0	0	0		ENSG00000067113|ENST00000307259|PLPP1;nc|ENSG00000067113|O14494-2|PLPP1	ENSG00000067113|ENST00000307259|PLPP1	ENSG00000067113|ENST00000307259|PLPP1	MULTI-MSMS	OvCa99_classI_Rep5	1	530.2510375976562	2	530.251286	1058.48802	-0.05785	-3.0675E-05	-0.28316	-0.00015014	-0.34101	-0.00018082	530.2511439692969	30.806	0.58924	30.806	30.582	31.171	0					30	11	4	0	0	0	0.21231	1	1207	1207		74.255	16.025	1	1663600			22434	1366	18354	18377	24829	24829					-0.038886359039452145
KEEEAGVKEL	10	Unmodified	_KEEEAGVKEL_					0	0	0		nc|ENSG00000138639|Q8N264-3|ARHGAP24;nc|ENSG00000138639|Q8N264-2|ARHGAP24;ARHGAP24|p.K657Tfs*7|1|0.04|ENSG00000138639|chr4:85995623-85995624|-/C|frameshift_variant;ENSG00000138639|ENST00000395184|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	MULTI-MSMS	OvCa9_classI_Rep3	3	566.29833984375	2	566.298236	1130.58192	-0.91483	-0.00051807	-0.010056	-5.6947E-06	-0.92489	-0.00052376	566.2978698656331	100.56	0.98025	98.952	98.518	99.498	-1.6053					67	19	5	0	0	0	0.22073	2	6833	6833;6839		91.265	1.0704	1	1325600			22435	107	18355	18378	24830;24831	24830					0.021850831983556418
KEEEEEESNSK	11	Unmodified	_KEEEEEESNSK_					0	0	0			REV__ATRX|p.Y1667Sfs*13|1|0.04|ENSG00000085224|chrX:77633341-77633341|T/-|frameshift_variant	REV__ATRX|p.Y1667Sfs*13|1|0.04|ENSG00000085224|chrX:77633341-77633341|T/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	447.24102783203125	3	446.528288	1336.56303	0.28342	0.00012655	4.2828	0.0019124	4.5662	0.0020389	446.53011000298255	55.596	0.61001	55.596	55.401	56.011	0					37	14	3	0	0	0	0.02539	1	4552	4552		52.167	36.247	1	825040	+		22436	15684	18356	18379	24832	24832					-0.0917854295403231
KEEEKNEKL	9	Unmodified	_KEEEKNEKL_					0	0	0		ENST00000572253.5_1_17:78055330-78055681:+|nuORF;nc|ENSG00000141519|Q4G0X9-3|CCDC40;ENST00000574799.5_1_17:78022329-78073571:+|nuORF;nc|ENSG00000141519|Q4G0X9-2|CCDC40;ENSG00000141519|ENST00000397545|CCDC40;ENSG00000165416|ENST00000310528|SUGT1;nc|ENSG00000165416|Q9Y2Z0|SUGT1	ENST00000572253.5_1_17:78055330-78055681:+|nuORF;ENSG00000165416|ENST00000310528|SUGT1	ENSG00000165416|ENST00000310528|SUGT1	MULTI-MSMS	OvCa99_classI_Rep5	1	573.8032836914062	2	573.803685	1145.59282	-0.61872	-0.00035502	0.30123	0.00017284	-0.3175	-0.00018218	573.8037062838122	24.315	0.60026	24.315	24.188	24.788	0					33	11	4	0	0	0	0.043101	1	432	432		124.08	17.073	1	362810			22437	6560;4920	18357	18380	24833	24833					0.025844855726063543
KEEEPSVKL	9	Unmodified	_KEEEPSVKL_					0	0	0		ENSG00000254505|ENST00000347519|CHMP4A;nc|ENSG00000254505|Q9BY43-2|CHMP4A	ENSG00000254505|ENST00000347519|CHMP4A	ENSG00000254505|ENST00000347519|CHMP4A	MULTI-MSMS	OvCa99_classI_Rep5	1	529.79150390625	2	529.790047	1057.56554	-0.71526	-0.00037894	0.9855	0.00052211	0.27024	0.00014317	529.7904850333629	53.561	0.91698	53.561	53.172	54.089	0					32	19	3	0	0	0	0.03923	1	4260	4260		127.46	1.6477	1	3511500			22438	9446	18358	18381	24834	24834					0.03906002032226752
KEEESEHHL	9	Unmodified	_KEEESEHHL_					0	0	0		ENSG00000135999|ENST00000258484|EPC2;EPC2|p.S751Lfs*15|1|0.05|ENSG00000135999|chr2:148784899-148784900|-/GCTGGAGCCAAATATGGTAT|frameshift_variant;ENST00000495790.1_1_10:32581422-32635732:-|nuORF;nc|ENSG00000120616|Q9H2F5|EPC1;EPC1|p.A656Dfs*9|1|0.12|ENSG00000120616|chr10:32272133-32272133|G/-|frameshift_variant;ENSG00000120616|ENST00000319778|EPC1	ENSG00000135999|ENST00000258484|EPC2;nc|ENSG00000120616|Q9H2F5|EPC1	nc|ENSG00000120616|Q9H2F5|EPC1	MULTI-MSMS	OvCa99_classI_Rep5	1	569.2620849609375	2	569.262185	1136.50982	-0.62462	-0.00035557	0.72819	0.00041453	0.10357	5.8957E-05	569.2624821456739	25.623	0.35097	25.623	25.442	25.793	0					19	6	4	0	0	0	0.053172	1	593	593		116.9	29.149	1	230810			22439	4444;14988	18359	18382	24835	24835					-0.052978311553715685
KEEGEIPLEQ	10	Unmodified	_KEEGEIPLEQ_					0	0	0		tr|A0A7D6VPZ8|A0A7D6VPZ8_9CLOTIsoaspartyldipeptidaseOS=ClostridiumintestinaleOX=36845GN=iadAPE=3SV=1	tr|A0A7D6VPZ8|A0A7D6VPZ8_9CLOTIsoaspartyldipeptidaseOS=ClostridiumintestinaleOX=36845GN=iadAPE=3SV=1	tr|A0A7D6VPZ8|A0A7D6VPZ8_9CLOTIsoaspartyldipeptidaseOS=ClostridiumintestinaleOX=36845GN=iadAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.2953491210938	2	586.295693	1170.57683	-0.79715	-0.00046736	1.6565	0.00097119	0.85933	0.00050382	586.2965844461413	39.743	1.171	36.789	36.566	37.737	-2.9541					63	22	4	0	0	0	0.43433	1	1679	1679		63.534	3.4156	1	330920			22440	34812	18360	18383	24836	24836					-0.0016322066426255333
KEEGPKEMTL	10	Unmodified	_KEEGPKEMTL_					0	0	0		nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1;ENST00000484880.1_1_1:67885652-67890638:-|nuORF;ENST00000510079.2_1_4:79102321-79102666:-|nuORF	nc|ENSG00000142864|Q8NC51-4|SERBP1	nc|ENSG00000142864|Q8NC51-4|SERBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	581.2952270507812	2	581.294639	1160.57472	-0.37965	-0.00022069	-0.70071	-0.00040732	-1.0804	-0.00062801	581.2938195762346	52.538	0.65281	52.538	52.304	52.956	0					31	14	3	0	0	0	0.026604	1	4129	4129		140.11	46.969	1	1224800			22441	4997	18361	18384	24837	24837					0.0008602732625604403
KEEGVDKL	8	Unmodified	_KEEGVDKL_					0	0	0		ENSG00000100154|ENST00000397906|TTC28	ENSG00000100154|ENST00000397906|TTC28	ENSG00000100154|ENST00000397906|TTC28	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.2628173828125	2	459.250557	916.486562	-0.012063	-5.5399E-06	0.24541	0.00011271	0.23335	0.00010717	459.2505578990928	56.723	0.67818	56.723	56.459	57.138	0					25	15	2	0	0	0	0.028476	1	4748	4748		44.117	0	1	335920			22442	2017	18362	18385	24838	24838					0.024977747979505693
KEEGVDKL	8	Unmodified	_KEEGVDKL_					0	0	0		ENSG00000100154|ENST00000397906|TTC28	ENSG00000100154|ENST00000397906|TTC28	ENSG00000100154|ENST00000397906|TTC28	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	459.250557	916.486562	0.11562	5.3099E-05	1.1722	0.00053834	1.2878	0.00059144	459.25100438357197	60.009	0.78659	56.579	56.21	56.996	-3.43	-0.071592	0.00054865	NaN	44.117	28	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69777			22443	2017	18362	18385							0.024977747979505693
KEEHEVAVL	9	Unmodified	_KEEHEVAVL_					0	0	0		ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3	ENSG00000185885|ENST00000408968|IFITM1	ENSG00000185885|ENST00000408968|IFITM1	MULTI-MSMS	OvCa99_classI_Rep5	1	527.2836303710938	2	527.282389	1052.55022	-0.60687	-0.00031999	-0.5352	-0.0002822	-1.1421	-0.00060219	527.2822314364422	51.642	3.3838	51.642	51.248	54.632	0					222	79	6	0	0	0	0.030815	3	4006	4006;4036;4066		134.81	55.36	1	134030000			22444	8297	18363	18386	24839;24840;24841	24839					0.026051352350577872
KEEHEVAVL	9	Unmodified	_KEEHEVAVL_					0	0	0		ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3	ENSG00000185885|ENST00000408968|IFITM1	ENSG00000185885|ENST00000408968|IFITM1	MULTI-MSMS	OvCa9_classI_Rep2	2	527.281494140625	2	527.282389	1052.55022	-1.0628	-0.00056039	0.78414	0.00041347	-0.27864	-0.00014692	527.2826541808121	56.719	1.6865	53.915	53.374	55.06	-2.804					115	33	5	0	0	0	0.22621	2	4011	4011;4048		71.877	13.648	1	682000			22445	8297	18363	18386	24842;24843	24842					0.026051352350577872
KEEHEVAVL	9	Unmodified	_KEEHEVAVL_					0	0	0		ENSG00000185885|ENST00000408968|IFITM1;ENSG00000142089|ENST00000399808|IFITM3	ENSG00000185885|ENST00000408968|IFITM1	ENSG00000185885|ENST00000408968|IFITM1	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.2837524414062	2	527.282389	1052.55022	-0.61967	-0.00032674	0.13202	6.9614E-05	-0.48764	-0.00025713	527.2823758213267	57.253	2.0733	53.908	53.324	55.397	-3.3449					118	40	5	0	0	0	0.3076	2	3721	3709;3721		62.107	14.192	1	2251800			22446	8297	18363	18386	24844;24845	24845					0.026051352350577872
KEEIHSVVL	9	Unmodified	_KEEIHSVVL_					0	0	0		ENST00000309334.5_2_10:63809197-63816879:+|nuORF	ENST00000309334.5_2_10:63809197-63816879:+|nuORF	ENST00000309334.5_2_10:63809197-63816879:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	527.3010864257812	2	527.300581	1052.58661	0.36735	0.00019371	-0.88528	-0.00046681	-0.51793	-0.0002731	527.2999949144795	63.434	0.55278	63.434	63.179	63.732	0					28	13	3	0	0	0	0.1804	2	5706	5706;5719		79.713	30.177	1	1860700			22447	10271	18364	18387	24846;24847	24846					0.06242012131770025
KEEIIKTL	8	Unmodified	_KEEIIKTL_					0	0	0		ENST00000424919.1_1_X:150162237-150162561:+|nuORF;ENST00000423330.1_1_9:133527641-133527767:+|nuORF;ENST00000433839.1_1_10:122892628-122892781:-|nuORF;ENST00000577759.1_1_17:37360679-37360898:+|nuORF;ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENST00000424919.1_1_X:150162237-150162561:+|nuORF;ENSG00000108298|ENST00000225430|RPL19;ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	OvCa9_classI_Rep2	2	487.2989196777344	2	487.30005	972.585547	-0.48546	-0.00023656	0.44888	0.00021874	-0.036573	-1.7822E-05	487.3000936662934	64.02	1.681	61.296	60.81	62.491	-2.7245					71	31	4	0	0	0	0.38806	1	4879	4879		90.37	0	1	362570			22448	2643;11815;11715	18365	18388	24848	24848					0.09815797762871625
KEEIKKYTE	9	Unmodified	_KEEIKKYTE_					0	0	0		tr|A0A7D6ZE29|A0A7D6ZE29_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12040PE=4SV=1	tr|A0A7D6ZE29|A0A7D6ZE29_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12040PE=4SV=1	tr|A0A7D6ZE29|A0A7D6ZE29_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12040PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	584.316650390625	2	584.316428	1166.6183	-2.3838	-0.0013929	3.4334	0.0020062	1.0497	0.00061333	584.3183343503605	35.539	1.4389	32.829	32.503	33.942	-2.7097					76	28	4	0	0	0	0.65371	1	1501	1501		25.574	1.0549	1	473780			22449	35475	18366	18389	24849	24849					0.04165960095065202
KEEIKSRV	8	Unmodified	_KEEIKSRV_					0	0	0		tr|A0A7D6VQD1|A0A7D6VQD1_9CLOTChaperoninGroELOS=ClostridiumintestinaleOX=36845GN=groLPE=3SV=1	tr|A0A7D6VQD1|A0A7D6VQD1_9CLOTChaperoninGroELOS=ClostridiumintestinaleOX=36845GN=groLPE=3SV=1	tr|A0A7D6VQD1|A0A7D6VQD1_9CLOTChaperoninGroELOS=ClostridiumintestinaleOX=36845GN=groLPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	494.7919921875	2	494.792924	987.571294	-0.92439	-0.00045738	1.1268	0.00055751	0.20236	0.00010013	494.79342647748115	51.987	1.0889	49.174	48.799	49.888	-2.8129					62	21	4	0	0	0	0.59904	1	3445	3445		64.207	3.2353	1	259500			22450	34841	18367	18390	24850	24850					0.07701145334578996
KEEKIHMNV	9	Unmodified	_KEEKIHMNV_					0	0	0			REV__nc|ENSG00000244474|P22310-2|UGT1A4	REV__nc|ENSG00000244474|P22310-2|UGT1A4	MULTI-MSMS	OvCa99_classI_Rep5	1	564.2982177734375	2	564.297516	1126.58048	-0.052595	-2.9679E-05	-2.7872	-0.0015728	-2.8398	-0.0016025	564.2960013831288	61.331	0.68021	61.331	60.984	61.665	0					41	15	4	0	0	0	0.28934	1	5414	5414		64.207	9.431	1	3537400	+		22451	23478	18368	18391	24851	24851					0.022251706285715045
KEEKKNRGP	9	Unmodified	_KEEKKNRGP_					0	0	0		ENST00000255641.12_1_19:1980198-1980525:+|nuORF	ENST00000255641.12_1_19:1980198-1980525:+|nuORF	ENST00000255641.12_1_19:1980198-1980525:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	544.3031005859375	2	543.306729	1084.59891	-0.093377	-5.0733E-05	3.4554	0.0018774	3.362	0.0018266	543.3078670379242	78.465	1.2904	76.112	75.8	77.091	-2.3527					44	25	2	0	0	0	0.027343	1	4165	4165		79.451	0	1	77358			22452	9823	18369	18392	24852	24852					0.05999048594821943
KEEKKPSN	8	Unmodified	_KEEKKPSN_					0	0	0			REV__ENST00000591793.1_1_19:44580492-44580543:+|nuORF	REV__ENST00000591793.1_1_19:44580492-44580543:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.76824951171875	2	480.261456	958.50836	-0.88655	-0.00042578	0.32202	0.00015465	-0.56453	-0.00027112	480.2615080253442	54.034	1.4356	50.786	50.466	51.901	-3.2474					36	27	2	0	0	0	0.028476	1	3392	3392		47.657	0.8909	1	191390	+		22453	27934	18370	18393	24853	24853					0.02744579546526893
KEEKQKLIL	9	Unmodified	_KEEKQKLIL_					0	0	0		ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1;ENST00000546624.2_1_12:88177101-88177509:-|nuORF	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	564.85302734375	2	564.852981	1127.69141	-0.41305	-0.00023331	0.15816	8.9335E-05	-0.25489	-0.00014398	564.852966206484	43.46	0.81022	43.46	43.185	43.995	0					51	18	4	0	0	0	0.045281	1	2867	2867		122.18	6.6819	1	1941200			22454	4226	18371	18394	24854	24854					0.13267133608337645
KEEKTAAEQF	10	Unmodified	_KEEKTAAEQF_					0	0	0		ENST00000580541.1_1_17:57189640-57232487:-|nuORF;ENST00000437036.6_1_17:57189640-57232487:-|nuORF;ENSG00000182628|ENST00000330137|SKA2;ENST00000583976.1_1_17:57189640-57232487:-|nuORF	ENST00000580541.1_1_17:57189640-57232487:-|nuORF	ENST00000580541.1_1_17:57189640-57232487:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	590.796142578125	2	590.79586	1179.57717	-0.69288	-0.00040935	0.12113	7.1564E-05	-0.57175	-0.00033779	590.7958102773043	39.795	0.52402	39.795	39.63	40.154	0					27	11	4	0	0	0	0.12738	1	2364	2364		106.68	13.488	1	811510			22455	8015	18372	18395	24855	24855					-0.005438009444560521
KEEKVEKLQ	9	Unmodified	_KEEKVEKLQ_					0	0	0			REV__tr|A0A7D6ZNU1|A0A7D6ZNU1_9CLOTBMCdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17705PE=3SV=1	REV__tr|A0A7D6ZNU1|A0A7D6ZNU1_9CLOTBMCdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17705PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.8238525390625	2	565.824421	1129.63429	1.6596	0.00093904	-2.0536	-0.001162	-0.39402	-0.00022295	565.8229237234004	33.487	1.6381	30.699	30.359	31.997	-2.7881					114	32	6	0	0	0	0.51177	1	976	976		41.427	3.6151	1	556400	+		22456	32123	18373	18396	24856	24856					0.0746566633195016
KEELFFNLFML	11	Unmodified	_KEELFFNLFML_					0	0	0			REV__ENST00000372759.3_1_1:40758406-40758472:+|nuORF	REV__ENST00000372759.3_1_1:40758406-40758472:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.29583740234375	3	477.584463	1429.73156	0.76264	0.00036423	1.6672	0.00079622	2.4298	0.0011604	477.5852478051545	97.895	0.85616	95.517	95.216	96.072	-2.3786					35	16	3	0	0	0	0.026221	1	8736	8736		19.263	12.942	1	57934	+		22457	25015	18374	18397	24857	24857					0.033883122165661916
KEELLKLT	8	Unmodified	_KEELLKLT_					0	0	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000532383.5_1_11:10821544-10823273:-|nuORF	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.3017272949219	2	487.30005	972.585547	0.24314	0.00011848	-0.62524	-0.00030468	-0.3821	-0.0001862	487.2996312198223	64.826	1.4062	61.341	61.114	62.521	-3.4854					65	28	4	0	0	0	0.38806	2	4637	4637;4648		90.37	5.209	1	704040			22458	2767	18375	18398	24858;24859	24858					0.09815797762848888
KEELPKKSL	9	Unmodified	_KEELPKKSL_					0	0	0			REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3671875	2	536.324057	1070.63356	-0.40884	-0.00021927	3.3837	0.0018148	2.9749	0.0015955	536.3259304071718	50.841	0.22189	50.841	50.685	50.907	0					8	4	3	0	0	0	0.027446	1	3866	3866		42.864	0	1	129020	+		22459	17113	18376	18399	24860	24860					0.10106871682910423
KEEMYGEHFDI	11	Unmodified	_KEEMYGEHFDI_					0	0	0		tr|A0A553SPQ2|A0A553SPQ2_NIACITrehaloseutilizationproteinThuAOS=NialliacirculansOX=1397GN=CEQ21_26825PE=4SV=1	tr|A0A553SPQ2|A0A553SPQ2_NIACITrehaloseutilizationproteinThuAOS=NialliacirculansOX=1397GN=CEQ21_26825PE=4SV=1	tr|A0A553SPQ2|A0A553SPQ2_NIACITrehaloseutilizationproteinThuAOS=NialliacirculansOX=1397GN=CEQ21_26825PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	466.5392150878906	3	466.539582	1396.59692	-1.2379	-0.00057752	-0.41885	-0.00019541	-1.6567	-0.00077293	466.539673189569	43.889	1.5511	43.889	43.608	45.159	0					89	34	6	0	0	0	0.68709	1	2926	2926		34.087	0	1	14521000			22460	34068	18377	18400	24861	24861					-0.08551792995967844
KEENKQVAL	9	Unmodified	_KEENKQVAL_					0	0	0		ENST00000517857.1_1_8:144391613-144392452:-|nuORF;nc|ENSG00000184428|Q969P6-2|TOP1MT;ENSG00000184428|ENST00000329245|TOP1MT	ENST00000517857.1_1_8:144391613-144392452:-|nuORF	ENST00000517857.1_1_8:144391613-144392452:-|nuORF	MSMS	OvCa99_classI_Rep5	1	529.7959594726562	2	529.795663	1057.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.127	1	36.127	35.627	36.627	0								0	0	0	0.16607	1	1879	1879		62.107	5.3864	1				22461	8155	18378	18401	24862	24862					0.05028824126384279
KEENRQILA	9	Unmodified	_KEENRQILA_					0	0	0		ENSG00000188191|ENST00000537384|PRKAR1B;PRKAR1B-GNA12|1|fusion	ENSG00000188191|ENST00000537384|PRKAR1B	ENSG00000188191|ENST00000537384|PRKAR1B	MULTI-MSMS	OvCa99_classI_Rep5	1	550.8069458007812	2	550.806562	1099.59857	-0.61419	-0.0003383	-0.13865	-7.6369E-05	-0.75284	-0.00041467	550.8063942280106	44.635	1.7616	44.635	44.35	46.112	0					103	39	5	0	0	0	0.21231	1	3016	3016		74.255	1.3758	1	27876000			22462	8457	18379	18402	24863	24863					0.05275628874960603
KEENVEIHQTL	11	Unmodified	_KEENVEIHQTL_					0	0	0		nc|ENSG00000198467|P07951-3|TPM2;nc|ENSG00000198467|P07951-2|TPM2;ENST00000378300.9_1_9:35682080-35682179:-|nuORF	nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000198467|P07951-3|TPM2	MULTI-MSMS	OvCa99_classI_Rep5	1	447.2337951660156	3	447.233258	1338.67794	0.60336	0.00026984	-0.82893	-0.00037073	-0.22558	-0.00010089	447.2329013690758	56.766	1.0241	56.766	56.498	57.522	0					55	23	3	0	0	0	0.04894	2	4746	4717;4746		123.11	43.623	1	6118700		+	22463	15257	18380	18403	24864;24865	24865					0.02215231038417187
KEENVGLHQTL	11	Unmodified	_KEENVGLHQTL_					0	0	0		ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000167460|P67936-2|TPM4;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;ENST00000368528.3_1_3:27674554-27675208:+|nuORF	ENSG00000167460|ENST00000643579|TPM4;ENST00000368528.3_1_3:27674554-27675208:+|nuORF	ENSG00000167460|ENST00000643579|TPM4	MULTI-MSMS	OvCa99_classI_Rep5	1	634.3375244140625	2	634.335684	1266.65681	-0.11208	-7.1095E-05	-0.52307	-0.0003318	-0.63515	-0.0004029	634.3353427485033	54.569	1.5106	54.569	54.13	55.641	0					101	35	6	0	0	0	1.6293999999999999E-21	3	4420	4394;4420;4444		237.51	89.757	1	27059000			22464	6790;10875	18381	18404	24866;24867;24868	24867					0.034152657295635436
KEENVGLHQTL	11	Unmodified	_KEENVGLHQTL_					0	0	0		ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000167460|P67936-2|TPM4;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;ENST00000368528.3_1_3:27674554-27675208:+|nuORF	ENSG00000167460|ENST00000643579|TPM4;ENST00000368528.3_1_3:27674554-27675208:+|nuORF	ENSG00000167460|ENST00000643579|TPM4	MULTI-MSMS	OvCa99_classI_Rep5	1	423.22784423828125	3	423.226215	1266.65681	-0.19746	-8.3571E-05	-0.10124	-4.2847E-05	-0.2987	-0.00012642	423.22619383419294	54.569	0.93855	54.569	54.334	55.273	0					72	21	5	0	0	0	0.31995	2	4403	4403;4433		84.31	42.068	1	12156000			22465	6790;10875	18381	18404	24869;24870	24869					0.034152657295635436
KEEPDGPAL	9	Unmodified	_KEEPDGPAL_					0	0	0		ENST00000480964.5_1_7:44801441-44805210:+|nuORF;ENST00000478045.5_1_7:44801192-44807219:+|nuORF;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2	ENST00000480964.5_1_7:44801441-44805210:+|nuORF	ENST00000480964.5_1_7:44801441-44805210:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	478.24188232421875	2	478.24019	954.465826	-0.35723	-0.00017084	0.20736	9.9169E-05	-0.14987	-7.1673E-05	478.2401730430352	54.657	1.0594	54.657	54.214	55.273	0					52	24	3	0	0	0	0.074342	1	4411	4411		104.75	35.96	1	2288600			22466	3538	18382	18405	24871	24871					-0.013228155817046172
KEEPEEET	8	Unmodified	_KEEPEEET_					0	0	0		nc|ENSG00000140939|O60936-3|NOL3	nc|ENSG00000140939|O60936-3|NOL3	nc|ENSG00000140939|O60936-3|NOL3	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.78326416015625	2	495.716744	989.418936	-0.8958	-0.00044406	2.0934	0.0010377	1.1976	0.00059366	495.71765651652805	34.981	0.42812	34.981	34.818	35.246	0					14	8	2	0	0	0	0.028476	1	1723	1723		53.351	7.3792	1	97687			22467	15059	18383	18406	24872	24872					-0.07619719923502544
KEEPPQPQL	9	Unmodified	_KEEPPQPQL_					0	0	0		ENST00000491113.1_1_20:35234354-35236222:+|nuORF;nc|ENSG00000101084|Q9BUV8-4|RAB5IF;nc|ENSG00000101084|Q9BUV8-3|RAB5IF;ENSG00000101084|ENST00000344795|RAB5IF;nc|ENSG00000101084|Q9BUV8|RAB5IF;nc|ENSG00000101084|Q9BUV8-5|RAB5IF	ENST00000491113.1_1_20:35234354-35236222:+|nuORF	ENST00000491113.1_1_20:35234354-35236222:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.28271484375	2	533.282389	1064.55022	-1.08	-0.00057595	0.9156	0.00048828	-0.16441	-8.7679E-05	533.2829717721623	65.041	1.6951	61.556	61.114	62.81	-3.4854					82	34	3	0	0	0	0.075543	2	4665	4653;4665		104.06	24.356	1	636750			22468	2137	18384	18407	24873;24874	24874					0.020531352350417365
KEEPPQPQL	9	Unmodified	_KEEPPQPQL_					0	0	0		ENST00000491113.1_1_20:35234354-35236222:+|nuORF;nc|ENSG00000101084|Q9BUV8-4|RAB5IF;nc|ENSG00000101084|Q9BUV8-3|RAB5IF;ENSG00000101084|ENST00000344795|RAB5IF;nc|ENSG00000101084|Q9BUV8|RAB5IF;nc|ENSG00000101084|Q9BUV8-5|RAB5IF	ENST00000491113.1_1_20:35234354-35236222:+|nuORF	ENST00000491113.1_1_20:35234354-35236222:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	533.282389	1064.55022	-1.1602	-0.00061874	0.96368	0.00051392	-0.19656	-0.00010482	533.2829983610501	64.486	1.3603	61.761	61.181	62.541	-2.7246	0.10277	2.9062E-05	NaN	104.06	63	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122760			22469	2137	18384	18407							0.020531352350417365
KEEPSNNVKL	10	Unmodified	_KEEPSNNVKL_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1;KPNB1|p.T551Nfs*3|1|0.14|ENSG00000108424|chr17:47673119-47673120|-/AAACTCCT|frameshift_variant;KPNB1|p.L552Pfs*68|1|0.1|ENSG00000108424|chr17:47673120-47673121|-/ACACCTCAGGTGATCTGCCC|frameshift_variant	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-MSMS	OvCa99_classI_Rep5	1	579.3115234375	2	579.311677	1156.6088	-0.76428	-0.00044276	0.51878	0.00030053	-0.2455	-0.00014222	579.3119437683871	42.644	0.68423	42.644	42.329	43.014	0					45	15	4	0	0	0	0.0039042	2	2770	2741;2770		167.23	35.196	1	3336500			22470	2654	18385	18408	24875;24876	24876					0.03676191809518059
KEEQRKRVILQ	11	Unmodified	_KEEQRKRVILQ_					0	0	0		nc|nan|Q96M02|C10orf90;ENSG00000154493|ENST00000488181|C10orf90;nc|nan|Q96M02-2|C10orf90	nc|nan|Q96M02|C10orf90	nc|nan|Q96M02|C10orf90	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.28765869140625	3	476.287808	1425.8416	0.32315	0.00015391	-0.7176	-0.00034179	-0.39445	-0.00018787	476.2874255337455	22.278	1.0813	20.939	20.675	21.757	-1.3386					78	26	4	0	0	0	0.71582	1	302	302		24.232	0	1	162610			22471	5742	18386	18409	24877	24877					0.14570873599996048
KEESGADQEL	10	Unmodified	_KEESGADQEL_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;ZNFX1|p.V1053Afs*12|1|0.06|ENSG00000124201|chr20:49252778-49252779|-/TCTCGGCTCACTGCAACCACCG|frameshift_variant;nc|ENSG00000124201|Q9P2E3-2|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	OvCa99_classI_Rep5	1	553.2527465820312	2	553.254025	1104.4935	-0.6349	-0.00035126	-0.28902	-0.0001599	-0.92392	-0.00051116	553.2538249122125	39.571	0.50763	39.571	39.332	39.84	0					29	11	3	0	0	0	0.012025	1	2328	2328		157.34	22.579	1	1416000			22472	3631	18387	18410	24878	24878					-0.05456957112141936
KEESSEEDYG	10	Unmodified	_KEESSEEDYG_					0	0	0		CON__Q28107	CON__Q28107	CON__Q28107	MULTI-MSMS	OvCa99_classI_Rep5	1	586.7342529296875	2	586.733123	1171.45169	1.8735	0.0010993	1.3018	0.00076382	3.1753	0.0018631	586.7336744460875	82.102	0.6673	82.102	81.854	82.522	0					35	15	4	0	0	0	0.20801	1	8492	8492		93.195	26.766	1	2177100		+	22473	638	18388	18411	24879	24879					-0.12717557591304285
KEETDVRIV	9	Unmodified	_KEETDVRIV_					0	0	0			REV__nc|ENSG00000160305|Q14689-5|DIP2A	REV__nc|ENSG00000160305|Q14689-5|DIP2A	MULTI-MSMS	OvCa99_classI_Rep5	1	544.8014526367188	2	544.800946	1087.58734	-0.59068	-0.00032181	1.186	0.00064616	0.59536	0.00032435	544.8007522381895	53.726	0.6574	53.726	53.432	54.089	0					45	15	3	0	0	0	0.28934	1	4300	4300		64.207	0	1	12615000	+		22474	20655	18389	18412	24880	24880					0.04704806780796389
KEETEEDDE	9	Unmodified	_KEETEEDDE_					0	0	0			REV__ENST00000399021.2_1_10:126556549-126556830:+|nuORF	REV__ENST00000399021.2_1_10:126556549-126556830:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.8152465820312	2	562.217305	1122.42006	0.44853	0.00025217	-4.4762	-0.0025166	-4.0277	-0.0022644	562.2147091990224	30.572	0.1493	30.572	30.483	30.632	0					4	2	2	0	0	0	0.027462	1	1186	1186		30.504	8.8013	1	11168	+		22475	25385	18390	18413	24881	24881					-0.1362555034527304
KEETKKKKP	9	Unmodified	_KEETKKKKP_					0	0	0		ENSG00000180801|ENST00000315366|ARSJ	ENSG00000180801|ENST00000315366|ARSJ	ENSG00000180801|ENST00000315366|ARSJ	MULTI-MSMS	OvCa99_classI_Rep5	1	558.3446655273438	2	558.342781	1114.67101	-0.10857	-6.0618E-05	0.046613	2.6026E-05	-0.061955	-3.4592E-05	558.342740314904	24.677	0.40291	24.677	24.536	24.938	0					11	7	2	0	0	0	0.63422	1	475	475		27.882	1.1893	1	72379			22476	7888	18391	18414	24882	24882					0.11825962948501001
KEETNIVKL	9	Unmodified	_KEETNIVKL_					0	0	0		AKAP9-CDK14|2|fusion;AKAP9-CDK14|1|fusion;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF	AKAP9-CDK14|2|fusion	AKAP9-CDK14|2|fusion	MSMS	OvCa99_classI_Rep5	1	537.315673828125	2	537.313689	1072.61282	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.125	1	59.125	58.625	59.625	0								0	0	0	3.7122E-06	1	5071	5071		176.44	17.169	1				22477	58	18392	18415	24883	24883					0.07942281303257914
KEETQPPVAL	10	Unmodified	_KEETQPPVAL_					0	0	0		nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1;ENST00000510079.2_1_4:79102753-79102939:-|nuORF	nc|ENSG00000142864|Q8NC51-4|SERBP1	nc|ENSG00000142864|Q8NC51-4|SERBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	556.3053588867188	2	556.303321	1110.59209	0.03602	2.0038E-05	0.33921	0.0001887	0.37523	0.00020874	556.3034596713502	73.406	1.1049	73.406	72.915	74.02	0					76	27	4	0	0	0	0.30325	1	7210	7210		80.455	18.347	1	14462000			22478	4997	18393	18416	24884	24884					0.04121690923557253
KEETQPPVAL	10	Unmodified	_KEETQPPVAL_					0	0	0		nc|ENSG00000142864|Q8NC51-4|SERBP1;ENSG00000142864|ENST00000361219|SERBP1;nc|ENSG00000142864|Q8NC51-2|SERBP1;nc|ENSG00000142864|Q8NC51|SERBP1;ENST00000510079.2_1_4:79102753-79102939:-|nuORF	nc|ENSG00000142864|Q8NC51-4|SERBP1	nc|ENSG00000142864|Q8NC51-4|SERBP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	556.3043212890625	2	556.303321	1110.59209	0.51255	0.00028514	-1.3592	-0.00075612	-0.84663	-0.00047098	556.3025979120359	76.044	1.0437	73.105	72.741	73.785	-2.9389					68	21	4	0	0	0	0.44431	1	6014	6014		62.107	12.666	1	277830			22479	4997	18393	18416	24885	24885					0.04121690923557253
KEEVEQAVL	9	Unmodified	_KEEVEQAVL_					0	0	0		nc|ENSG00000241644|O95050-2|INMT;ENSG00000241644|ENST00000013222|INMT	nc|ENSG00000241644|O95050-2|INMT	nc|ENSG00000241644|O95050-2|INMT	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.7841186523438	2	522.782222	1043.54989	-1.1435	-0.00059778	1.9105	0.00099877	0.76703	0.00040099	522.782690247689	70.588	0.91496	67.107	66.836	67.751	-3.4812					61	18	6	0	0	0	0.18887	2	5333	5333;5343		78.264	0	1	1021600			22480	9354	18394	18417	24886;24887	24886					0.029857155152058112
KEEYGDIP	8	Unmodified	_KEEYGDIP_					0	0	0		ENSG00000115850|ENST00000264162|LCT;LCT|p.A1603Cfs*2|1|0.24|ENSG00000115850|chr2:135800666-135800667|-/A|frameshift_variant	ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.750244140625	2	475.726915	949.439277	-0.6136	-0.00029191	0.95221	0.00045299	0.33861	0.00016109	475.7272392437854	53.496	0.38721	53.496	53.305	53.692	0					14	8	2	0	0	0	0.028476	1	4240	4240		38.806	8.3025	1	245270			22481	3133	18395	18418	24888	24888					-0.03746504473042478
KEFDGKSLV	9	Unmodified	_KEFDGKSLV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;chr6:44251608-44252115|189|369.98|0.66|9.12|+|0|HSP90AB1,None|1;ENST00000517330.1_1_5:77337712-77337985:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OvCa99_classI_Rep5	1	511.7809753417969	2	511.779482	1021.54441	-0.15205	-7.7816E-05	-0.52922	-0.00027085	-0.68127	-0.00034866	511.77915825625143	58.634	0.99127	58.634	58.237	59.228	0					52	24	3	0	0	0	0.056671	1	4990	4990		114.89	19.079	1	34880000			22482	1946	18396	18419	24889	24889					0.034500367233931684
KEFDGKSLVSV	11	Unmodified	_KEFDGKSLVSV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;chr6:44251608-44252115|189|369.98|0.66|9.12|+|0|HSP90AB1,None|1;ENST00000517330.1_1_5:77337712-77337985:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OvCa99_classI_Rep5	1	604.8318481445312	2	604.829703	1207.64485	2.4565	0.0014857	-0.45347	-0.00027427	2.003	0.0012115	604.829263772671	74.979	1.006	74.979	74.557	75.563	0					66	24	4	0	0	0	0.00018122	2	7429	7429;7456		169.99	74.178	1	8215700			22483	1946	18397	18420	24890;24891	24890					0.04933648986366279
KEFDGKSLVSV	11	Unmodified	_KEFDGKSLVSV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;chr6:44251608-44252115|189|369.98|0.66|9.12|+|0|HSP90AB1,None|1;ENST00000517330.1_1_5:77337712-77337985:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OvCa9_classI_Rep2	2	604.8302612304688	2	604.829703	1207.64485	-0.79402	-0.00048025	0.29511	0.00017849	-0.49891	-0.00030175	604.8298540196157	77.341	3.0803	75.551	74.998	78.079	-1.7894					143	59	4	0	0	0	4.5629E-05	7	6431	6425;6431;6437;6444;6450;6457;6463		181.87	79.756	1	1698300			22484	1946	18397	18420	24892;24893;24894;24895;24896;24897;24898	24893					0.04933648986366279
KEFDGKSLVSV	11	Unmodified	_KEFDGKSLVSV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;chr6:44251608-44252115|189|369.98|0.66|9.12|+|0|HSP90AB1,None|1;ENST00000517330.1_1_5:77337712-77337985:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OvCa9_classI_Rep3	3	604.8298950195312	2	604.829703	1207.64485	1.14	0.00068953	-1.7505	-0.0010588	-0.61051	-0.00036925	604.8285799366442	77.78	2.7484	75.427	75.1	77.848	-2.3527					150	54	5	0	0	0	3.6671E-08	8	4111	4083;4087;4093;4099;4105;4111;4117;4125		188.91	90.33	1	2864000			22485	1946	18397	18420	24899;24900;24901;24902;24903;24904;24905;24906	24904					0.04933648986366279
KEFDGKSLVSV	11	Unmodified	_KEFDGKSLVSV_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88814417-88815164:+|nuORF;nc|ENSG00000205940|Q58FF8|HSP90AB2P;chr6:44251608-44252115|189|369.98|0.66|9.12|+|0|HSP90AB1,None|1;ENST00000517330.1_1_5:77337712-77337985:-|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	604.8311767578125	2	604.829703	1207.64485	0.70476	0.00042626	-1.3919	-0.00084184	-0.6871	-0.00041558	604.828803676656	78.372	2.4433	75.555	75.116	77.559	-2.8165					113	50	3	0	0	0	4.5629E-05	4	6308	6298;6308;6322;6335		181.87	80.621	1	2890500			22486	1946	18397	18420	24907;24908;24909;24910	24908					0.04933648986366279
KEFDHPNVM	9	Unmodified	_KEFDHPNVM_					0	0	0		ENSG00000167601|ENST00000301178|AXL;nc|ENSG00000167601|P30530-2|AXL	ENSG00000167601|ENST00000301178|AXL	ENSG00000167601|ENST00000301178|AXL	MULTI-MSMS	OvCa99_classI_Rep5	1	558.7626342773438	2	558.760766	1115.50698	0.66682	0.0003726	-0.92827	-0.00051868	-0.26145	-0.00014609	558.7601660870929	57.837	0.96435	57.837	57.566	58.53	0					49	22	4	0	0	0	0.1149	1	4884	4884		93.143	38.367	1	4298300			22487	6811	18398	18421	24911	24911					-0.04615377813888699
KEFEDKKVEL	10	Unmodified	_KEFEDKKVEL_					0	0	0		ENSG00000111707|ENST00000543473|SUDS3	ENSG00000111707|ENST00000543473|SUDS3	ENSG00000111707|ENST00000543473|SUDS3	MULTI-MSMS	OvCa99_classI_Rep5	1	632.8448486328125	2	632.84281	1263.67107	0.26783	0.00016949	-0.22139	-0.00014011	0.046436	2.9387E-05	632.8425993371445	51.228	0.79552	51.228	50.993	51.788	0					60	18	5	0	0	0	0.0020415	2	3928	3928;3953		136.99	18.401	1	8323000			22488	2845	18399	18422	24912;24913	24912					0.04977918157851491
KEFEENTQHL	10	Unmodified	_KEFEENTQHL_					0	0	0		nc|ENSG00000121210|A2VDJ0-3|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L;ENSG00000121210|ENST00000409959|TMEM131L;nc|ENSG00000121210|A2VDJ0-6|TMEM131L	nc|ENSG00000121210|A2VDJ0-3|TMEM131L	nc|ENSG00000121210|A2VDJ0-3|TMEM131L	MULTI-MSMS	OvCa99_classI_Rep5	1	637.8047485351562	2	637.804217	1273.59388	-0.083826	-5.3465E-05	-0.040271	-2.5685E-05	-0.1241	-7.915E-05	637.8041236169316	47.963	0.56472	47.963	47.768	48.332	0					33	12	4	0	0	0	0.023817	1	3498	3498		143.37	65.11	1	1564300			22489	3473	18400	18423	24914	24914					-0.031973000584684996
KEFEGKTLV	9	Unmodified	_KEFEGKTLV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000530115.1_1_11:27910903-27911533:-|nuORF;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	OvCa99_classI_Rep5	1	525.7967529296875	2	525.795132	1049.57571	-0.69808	-0.00036705	1.1919	0.00062668	0.49379	0.00025963	525.7955579564926	53.86	1.4132	53.86	53.305	54.718	0					93	33	4	0	0	0	0.046778	2	4325	4294;4325		120.87	33.172	1	11911000			22490	1643;11112	18401	18424	24915;24916	24916					0.052906097574805244
KEFEGKTLV	9	Unmodified	_KEFEGKTLV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000530115.1_1_11:27910903-27911533:-|nuORF;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.7955932617188	2	525.795132	1049.57571	-0.73438	-0.00038613	0.27628	0.00014527	-0.45809	-0.00024086	525.7951211270889	58.817	0.85225	55.425	55.101	55.953	-3.392					50	16	4	0	0	0	0.16562	1	3891	3891		82.241	10.363	1	512100			22491	1643;11112	18401	18424	24917	24917					0.052906097574805244
KEFEGKTLV	9	Unmodified	_KEFEGKTLV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000530115.1_1_11:27910903-27911533:-|nuORF;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	ENSG00000080824|ENST00000216281|HSP90AA1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	525.795132	1049.57571	-0.60271	-0.0003169	0.36293	0.00019083	-0.23978	-0.00012608	525.7952240065167	58.169	1.0036	55.377	54.823	55.826	-2.792	-0.024262	5.4E-05	NaN	82.241	46	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181120			22492	1643;11112	18401	18424							0.052906097574805244
KEFEGVGGI	9	Unmodified	_KEFEGVGGI_					0	0	0		tr|A0A553SQU8|A0A553SQU8_NIACIConjugaltransferproteinOS=NialliacirculansOX=1397GN=CEQ21_07300PE=3SV=1	tr|A0A553SQU8|A0A553SQU8_NIACIConjugaltransferproteinOS=NialliacirculansOX=1397GN=CEQ21_07300PE=3SV=1	tr|A0A553SQU8|A0A553SQU8_NIACIConjugaltransferproteinOS=NialliacirculansOX=1397GN=CEQ21_07300PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	467.7467956542969	2	468.245275	934.475997	-0.28118	-0.00013166	4.0076	0.0018766	3.7265	0.0017449	468.24714570859896	48.378	1.5943	45.27	44.482	46.076	-3.1077					48	30	2	0	0	0	0.027462	1	2674	2674		49.442	7.0454	1	156640			22493	34200	18402	18425	24918	24918					0.006137921435311
KEFERVRV	8	Unmodified	_KEFERVRV_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.7848510742188	2	531.806365	1061.59818	0.38418	0.00020431	-0.44727	-0.00023786	-0.063087	-3.355E-05	531.8060225687459	72.874	1.1404	70.386	69.934	71.074	-2.4873					63	22	5	0	0	0	0.028476	1	3519	3519		27.882	4.8398	1	46964			22494	2168	18403	18426	24919	24919					0.06984253945756791
KEFEVKDPEL	10	Unmodified	_KEFEVKDPEL_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	OvCa99_classI_Rep5	1	617.3228759765625	2	617.321711	1232.62887	-0.11178	-6.9007E-05	0.10638	6.5673E-05	-0.0054012	-3.3343E-06	617.3217174171299	72.935	0.79517	72.935	72.684	73.479	0					55	19	4	0	0	0	0.059086	1	7124	7124		125.71	19.03	1	7103300			22495	1827	18404	18427	24920	24920					0.021859427494746342
KEFEVKDPEL	10	Unmodified	_KEFEVKDPEL_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MATCH	OvCa9_classI_Rep2	2		2	617.321711	1232.62887	-1.1199	-0.00069132	1.1871	0.00073284	0.067255	4.1518E-05	617.3222019770802	74.972	0.98254	73.001	72.639	73.622	-1.9711	0.084402	0.0016872	NaN	125.71	50	18	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119910			22496	1827	18404	18427							0.021859427494746342
KEFEVKDPEL	10	Unmodified	_KEFEVKDPEL_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MATCH	OvCa9_classI_Rep3	3		2	617.321711	1232.62887	0.61249	0.0003781	-1.0351	-0.00063902	-0.42266	-0.00026091	617.32092307514	75.122	1.2457	72.711	72.488	73.734	-2.4106	-0.2054	-0.0010566	NaN	125.71	64	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225460			22497	1827	18404	18427							0.021859427494746342
KEFEVKDPEL	10	Unmodified	_KEFEVKDPEL_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	617.321711	1232.62887	0.082511	5.0936E-05	-0.14328	-8.8451E-05	-0.06077	-3.7515E-05	617.3215425658307	75.959	0.7636	73.02	72.741	73.504	-2.9389	0.10322	4.4578E-05	NaN	125.71	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162620			22498	1827	18404	18427							0.021859427494746342
KEFGDDKVQL	10	Unmodified	_KEFGDDKVQL_					0	0	0		ENST00000488381.5_1_12:6760363-6764813:-|nuORF;ENSG00000111653|ENST00000341550|ING4;ENST00000484795.5_1_12:6761826-6762560:-|nuORF;nc|ENSG00000111653|Q9UNL4-8|ING4;nc|ENSG00000111653|Q9UNL4-3|ING4;nc|ENSG00000111653|Q9UNL4-4|ING4;nc|ENSG00000111653|Q9UNL4-7|ING4;nc|ENSG00000111653|Q9UNL4-5|ING4;nc|ENSG00000111653|Q9UNL4-6|ING4;nc|ENSG00000111653|Q9UNL4|ING4	ENST00000488381.5_1_12:6760363-6764813:-|nuORF	ENST00000488381.5_1_12:6760363-6764813:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	589.8071899414062	2	589.806228	1177.5979	-0.8271	-0.00048783	-0.0057691	-3.4027E-06	-0.83286	-0.00049123	589.8061427428843	66.065	0.86899	66.065	65.831	66.7	0					75	21	6	0	0	0	0.016395	1	6090	6090		152.06	19.303	1	21680000			22499	2838	18405	18428	24921	24921					0.016207894352419316
KEFGDDKVQL	10	Unmodified	_KEFGDDKVQL_					0	0	0		ENST00000488381.5_1_12:6760363-6764813:-|nuORF;ENSG00000111653|ENST00000341550|ING4;ENST00000484795.5_1_12:6761826-6762560:-|nuORF;nc|ENSG00000111653|Q9UNL4-8|ING4;nc|ENSG00000111653|Q9UNL4-3|ING4;nc|ENSG00000111653|Q9UNL4-4|ING4;nc|ENSG00000111653|Q9UNL4-7|ING4;nc|ENSG00000111653|Q9UNL4-5|ING4;nc|ENSG00000111653|Q9UNL4-6|ING4;nc|ENSG00000111653|Q9UNL4|ING4	ENST00000488381.5_1_12:6760363-6764813:-|nuORF	ENST00000488381.5_1_12:6760363-6764813:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	589.806228	1177.5979	-1.0843	-0.00063951	0.46625	0.000275	-0.61802	-0.00036451	589.8065275616522	69.073	1.3453	66.452	65.721	67.066	-2.6203	0.11398	0.00024332	NaN	152.06	53	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64544			22500	2838	18405	18428							0.016207894352419316
KEFGDDKVQL	10	Unmodified	_KEFGDDKVQL_					0	0	0		ENST00000488381.5_1_12:6760363-6764813:-|nuORF;ENSG00000111653|ENST00000341550|ING4;ENST00000484795.5_1_12:6761826-6762560:-|nuORF;nc|ENSG00000111653|Q9UNL4-8|ING4;nc|ENSG00000111653|Q9UNL4-3|ING4;nc|ENSG00000111653|Q9UNL4-4|ING4;nc|ENSG00000111653|Q9UNL4-7|ING4;nc|ENSG00000111653|Q9UNL4-5|ING4;nc|ENSG00000111653|Q9UNL4-6|ING4;nc|ENSG00000111653|Q9UNL4|ING4	ENST00000488381.5_1_12:6760363-6764813:-|nuORF	ENST00000488381.5_1_12:6760363-6764813:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	589.806228	1177.5979	-0.8081	-0.00047662	0.81514	0.00048078	0.0070488	4.1574E-06	589.806493464771	69.979	1.025	66.498	66.153	67.178	-3.4812	0.1596	0.00065487	NaN	152.06	36	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135250			22501	2838	18405	18428							0.016207894352419316
KEFGTNIKL	9	Unmodified	_KEFGTNIKL_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;HSP90B1|p.I687Vfs*9|1|0.07|ENSG00000166598|chr12:103946648-103946649|-/GTGCTCCAGGTACTTGGGACTC|frameshift_variant;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000415545.2_1_1:92108345-92109332:+|nuORF;nc|ENSG00000259706|Q58FF3|HSP90B2P;ENST00000551983.1_1_12:104335630-104337190:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	OvCa99_classI_Rep5	1	525.3062133789062	2	525.303124	1048.5917	-0.16841	-8.8465E-05	1.1584	0.00060852	0.99001	0.00052005	525.3032631302407	70.706	1.5979	70.706	70.447	72.045	0					92	39	3	0	0	0	0.029147	1	6792	6792		136.27	26.148	1	6176100			22502	6697	18406	18429	24922	24922					0.06934315994362805
KEFGTNIKL	9	Unmodified	_KEFGTNIKL_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;HSP90B1|p.I687Vfs*9|1|0.07|ENSG00000166598|chr12:103946648-103946649|-/GTGCTCCAGGTACTTGGGACTC|frameshift_variant;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000415545.2_1_1:92108345-92109332:+|nuORF;nc|ENSG00000259706|Q58FF3|HSP90B2P;ENST00000551983.1_1_12:104335630-104337190:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.3043823242188	2	525.303124	1048.5917	-1.0528	-0.00055305	1.127	0.00059202	0.074186	3.897E-05	525.3033552616773	74.222	0.5173	70.991	70.723	71.24	-3.2308					30	10	3	0	0	0	0.26076	1	5789	5789		67.494	2.0283	1	473960			22503	6697	18406	18429	24923	24923					0.06934315994362805
KEFGTNIKL	9	Unmodified	_KEFGTNIKL_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;HSP90B1|p.I687Vfs*9|1|0.07|ENSG00000166598|chr12:103946648-103946649|-/GTGCTCCAGGTACTTGGGACTC|frameshift_variant;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000415545.2_1_1:92108345-92109332:+|nuORF;nc|ENSG00000259706|Q58FF3|HSP90B2P;ENST00000551983.1_1_12:104335630-104337190:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	525.303124	1048.5917	-0.077394	-4.0655E-05	0.01992	1.0464E-05	-0.057474	-3.0191E-05	525.3027584854207	72.964	0.83408	70.565	70.22	71.054	-2.3999	-0.17646	-0.00079525	NaN	136.27	41	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405110			22504	6697	18406	18429							0.06934315994362805
KEFGTNIKL	9	Unmodified	_KEFGTNIKL_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;HSP90B1|p.I687Vfs*9|1|0.07|ENSG00000166598|chr12:103946648-103946649|-/GTGCTCCAGGTACTTGGGACTC|frameshift_variant;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000415545.2_1_1:92108345-92109332:+|nuORF;nc|ENSG00000259706|Q58FF3|HSP90B2P;ENST00000551983.1_1_12:104335630-104337190:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	525.303124	1048.5917	-0.53189	-0.0002794	1.199	0.00062981	0.66706	0.00035041	525.3030082256553	73.189	0.59244	70.702	70.432	71.024	-2.4873	-0.038915	0.00044345	NaN	136.27	37	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	329980			22505	6697	18406	18429							0.06934315994362805
KEFHKKVE	8	Unmodified	_KEFHKKVE_					0	0	0			REV__nc|ENSG00000073803|O43283-5|MAP3K13	REV__nc|ENSG00000073803|O43283-5|MAP3K13	MULTI-MSMS	OvCa99_classI_Rep5	1	522.794677734375	2	522.795466	1043.57638	-0.8213	-0.00042937	0.71257	0.00037253	-0.10874	-5.6846E-05	522.7957050896806	53.912	1.1114	53.912	53.564	54.675	0					84	25	7	0	0	0	0.59904	1	4295	4295		64.207	3.2353	1	20102000	+		22506	16941	18407	18430	24924	24924					0.056334491971938405
KEFKDTATVV	10	Unmodified	_KEFKDTATVV_					0	0	0			REV__nc|ENSG00000100852|Q13017-2|ARHGAP5	REV__nc|ENSG00000100852|Q13017-2|ARHGAP5	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2620849609375	2	569.311146	1136.60774	-0.90904	-0.00051753	-4.375	-0.0024908	-5.2841	-0.0030083	569.8112969163105	27.088	0.59947	27.088	26.892	27.491	0					22	11	3	0	0	0	0.026602	1	761	761		65.465	0	1	26799	+		22507	17455	18408	18431	24925	24925					0.044899774406076176
KEFKMDNFSP	10	Unmodified	_KEFKMDNFSP_					0	0	0		TOPORS|p.S774Rfs*14|1|0.06|ENSG00000197579|chr9:32542203-32542203|A/-|frameshift_variant;TOPORS|p.Q229Vfs*15|1|0.17|ENSG00000197579|chr9:32543839-32543840|TG/-|frameshift_variant;nc|ENSG00000197579|Q9NS56-2|TOPORS;ENSG00000197579|ENST00000360538|TOPORS	TOPORS|p.S774Rfs*14|1|0.06|ENSG00000197579|chr9:32542203-32542203|A/-|frameshift_variant;nc|ENSG00000197579|Q9NS56-2|TOPORS	TOPORS|p.S774Rfs*14|1|0.06|ENSG00000197579|chr9:32542203-32542203|A/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	621.8165893554688	2	621.794806	1241.57506	0.2561	0.00015924	3.6736	0.0022842	3.9297	0.0024434	621.7973023172008	63.411	0.42776	63.411	63.179	63.607	0					14	10	2	0	0	0	0.026577	1	5724	5724		49.536	6.6718	1	252700			22508	32975;8725	18409	18432	24926	24926					-0.03606552953874598
KEFKMDNFSP	10	Unmodified	_KEFKMDNFSP_					0	0	0		TOPORS|p.S774Rfs*14|1|0.06|ENSG00000197579|chr9:32542203-32542203|A/-|frameshift_variant;TOPORS|p.Q229Vfs*15|1|0.17|ENSG00000197579|chr9:32543839-32543840|TG/-|frameshift_variant;nc|ENSG00000197579|Q9NS56-2|TOPORS;ENSG00000197579|ENST00000360538|TOPORS	TOPORS|p.S774Rfs*14|1|0.06|ENSG00000197579|chr9:32542203-32542203|A/-|frameshift_variant;nc|ENSG00000197579|Q9NS56-2|TOPORS	TOPORS|p.S774Rfs*14|1|0.06|ENSG00000197579|chr9:32542203-32542203|A/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	621.794806	1241.57506	0.67553	0.00042004	0.89821	0.0005585	1.5737	0.00097854	622.29654825368	67.271	0.2482	63.781	63.59	63.839	-3.4902	0.18493	-0.0020119	NaN	49.536	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12033			22509	32975;8725	18409	18432							-0.03606552953874598
KEFLIISRG	9	Unmodified	_KEFLIISRG_					0	0	0		tr|A0A553SUJ1|A0A553SUJ1_NIACIHydroxyaciddehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_00225PE=3SV=1	tr|A0A553SUJ1|A0A553SUJ1_NIACIHydroxyaciddehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_00225PE=3SV=1	tr|A0A553SUJ1|A0A553SUJ1_NIACIHydroxyaciddehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_00225PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	531.81689453125	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.64427	1	11678	11678		26.693	1.2427	1	178650			22510	34615	18410	18433	24927	24927					0.09498308748356976
KEFLSRSDQL	10	Unmodified	_KEFLSRSDQL_					0	0	0		nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-5|SEC31A;SEC31A|p.I462Lfs*16|1|0.44|ENSG00000138674|chr4:82864412-82864412|T/-|frameshift_variant;nc|ENSG00000138674|O94979-7|SEC31A	nc|ENSG00000138674|O94979-8|SEC31A	nc|ENSG00000138674|O94979-8|SEC31A	MULTI-MSMS	OvCa99_classI_Rep5	1	611.8258056640625	2	611.824952	1221.63535	-0.32506	-0.00019888	-0.0067785	-4.1472E-06	-0.33184	-0.00020303	611.8248657321258	61.725	0.96032	61.725	61.458	62.418	0					59	22	4	0	0	0	0.027228	1	5450	5450		154.12	30.038	1	4491100			22511	4710	18411	18434	24928	24928					0.03339880700855247
KEFLVVQLK	9	Unmodified	_KEFLVVQLK_					0	0	0			REV__nc|ENSG00000142609|Q9C0B2|CFAP74	REV__nc|ENSG00000142609|Q9C0B2|CFAP74	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.3204956054688	2	552.344792	1102.67503	1.5902	0.00087832	0.088203	4.8718E-05	1.6784	0.00092704	552.344415247037	112.48	0.6324	112.48	112.16	112.79	0					25	13	3	0	0	0	0.027462	1	12844	12844		35.618	8.9254	1	153260	+		22512	19794	18412	18435	24929	24929					0.127800524422355
KEFPEKQEL	9	Unmodified	_KEFPEKQEL_					0	0	0		ENSG00000160445|ENST00000291900|ZER1	ENSG00000160445|ENST00000291900|ZER1	ENSG00000160445|ENST00000291900|ZER1	MULTI-MSMS	OvCa99_classI_Rep5	1	574.3049926757812	2	574.303321	1146.59209	-0.99836	-0.00057336	0.88209	0.00050659	-0.11627	-6.6775E-05	574.3036605876445	50.148	1.1842	50.148	49.635	50.819	0					70	26	4	0	0	0	0.0094273	2	3775	3775;3804		171.53	49.356	1	2190500			22513	6066	18413	18436	24930;24931	24930					0.0246569092360005
KEFPGFLEN	9	Unmodified	_KEFPGFLEN_					0	0	0		ENSG00000197747|ENST00000368811|S100A10	ENSG00000197747|ENST00000368811|S100A10	ENSG00000197747|ENST00000368811|S100A10	MULTI-MSMS	OvCa9_classI_Rep2	2	540.7706909179688	2	540.771657	1079.52876	-0.63627	-0.00034408	0.33866	0.00018314	-0.29761	-0.00016094	540.7717982819931	97.486	2.1634	96.527	95.728	97.891	-0.95856					138	43	5	0	0	0	0.056734	10	8809	8797;8802;8809;8815;8820;8826;8831;8837;8843;8850		114.86	47.365	1	585060			22514	8743	18414	18437	24932;24933;24934;24935;24936;24937;24938;24939;24940;24941	24934					-0.007822497936558648
KEFPGFLEN	9	Unmodified	_KEFPGFLEN_					0	0	0		ENSG00000197747|ENST00000368811|S100A10	ENSG00000197747|ENST00000368811|S100A10	ENSG00000197747|ENST00000368811|S100A10	MULTI-MSMS	OvCa9_classI_Rep3	3	540.7723999023438	2	540.771657	1079.52876	0.21854	0.00011818	-0.40868	-0.000221	-0.19015	-0.00010283	540.7713541616878	98.201	2.1887	96.442	95.722	97.91	-1.7595					137	42	4	0	0	0	0.028475	9	6535	6535;6540;6546;6551;6558;6564;6570;6583;6589		136.99	43.846	1	822010			22515	8743	18414	18437	24942;24943;24944;24945;24946;24947;24948;24949;24950	24942					-0.007822497936558648
KEFPGFLEN	9	Unmodified	_KEFPGFLEN_					0	0	0		ENSG00000197747|ENST00000368811|S100A10	ENSG00000197747|ENST00000368811|S100A10	ENSG00000197747|ENST00000368811|S100A10	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.7728881835938	2	540.771657	1079.52876	-0.90695	-0.00049045	0.88238	0.00047717	-0.024563	-1.3283E-05	540.7720488690916	98.794	2.1972	96.469	95.827	98.024	-2.3253					131	42	4	0	0	0	0.028475	6	8782	8772;8782;8793;8805;8817;8831		136.99	56.534	1	759720			22516	8743	18414	18437	24951;24952;24953;24954;24955;24956	24952					-0.007822497936558648
KEFRQYLKKKR	11	Unmodified	_KEFRQYLKKKR_					0	0	0		tr|A0A7D6VX14|A0A7D6VX14_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06395PE=4SV=1	tr|A0A7D6VX14|A0A7D6VX14_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06395PE=4SV=1	tr|A0A7D6VX14|A0A7D6VX14_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06395PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.6426086425781	3	508.643815	1522.90962	-0.41242	-0.00020977	-2.0179	-0.0010264	-2.4303	-0.0012361	508.6427705830946	29.3	1.099	29.3	28.987	30.086	0					68	21	5	0	0	0	0.72458	1	1037	1037		21.032	12.233	1	706630			22517	35267	18415	18438	24957	24957					0.1690774325061284
KEFYQFPRYWW	11	Unmodified	_KEFYQFPRYWW_					0	0	0			REV__nc|ENSG00000198964|Q86VZ5-2|SGMS1	REV__nc|ENSG00000198964|Q86VZ5-2|SGMS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.2916870117188	3	550.601504	1648.78268	-1.1836	-0.00065168	-0.23727	-0.00013064	-1.4209	-0.00078232	550.9356714591661	27.788	0.55058	27.788	27.44	27.991	0					23	10	3	0	0	0	0.026302	1	851	851		22.562	19.153	1	58751	+		22518	23101	18416	18439	24958	24958					-0.015756026943563484
KEGEDLIQQL	10	Unmodified	_KEGEDLIQQL_					0	0	0		nc|ENSG00000160145|O60229-2|KALRN;nc|ENSG00000160145|O60229|KALRN;ENST00000393501.5_1_3:124103736-124207203:+|nuORF;ENSG00000160145|ENST00000682506|KALRN;nc|ENSG00000038382|O75962-2|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-5|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENST00000515144.5_1_5:14293150-14488426:+|nuORF	nc|ENSG00000160145|O60229-2|KALRN;nc|ENSG00000038382|O75962-2|TRIO	nc|ENSG00000038382|O75962-2|TRIO	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.8125	2	586.81151	1171.60847	-0.23843	-0.00013991	0.10391	6.0974E-05	-0.13452	-7.8939E-05	586.8114189133727	96.307	1.2543	93.882	93.609	94.863	-2.4256					55	24	4	0	0	0	0.4826	1	8513	8513		56.632	7.1907	1	390460			22519	1098;15127	18417	18440	24959	24959					0.029527720896794563
KEGEEQPVL	9	Unmodified	_KEGEEQPVL_					0	0	0		AFF1-UBR5|1|fusion;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	AFF1-UBR5|1|fusion	AFF1-UBR5|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.7677001953125	2	514.766571	1027.51859	0.1138	5.8581E-05	-0.40747	-0.00020975	-0.29366	-0.00015117	514.7661933621142	59.816	1.5823	56.421	56.097	57.68	-3.3949					49	31	3	0	0	0	0.12515	1	4006	4006		90.37	10.657	1	924170			22520	45	18418	18441	24960	24960					0.005931424811024044
KEGEEQPVL	9	Unmodified	_KEGEEQPVL_					0	0	0		AFF1-UBR5|1|fusion;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	AFF1-UBR5|1|fusion	AFF1-UBR5|1|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.766571	1027.51859	-0.26598	-0.00013692	4.2718	0.002199	4.0058	0.0020621	514.76682608313	59.53	1.5671	56.75	56.189	57.756	-2.7801	0.16428	0.0043914	NaN	90.37	88	29	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158940			22521	45	18418	18441							0.005931424811024044
KEGEFVAQF	9	Unmodified	_KEGEFVAQF_					0	0	0		ENST00000414718.1_1_20:12361512-12361782:+|nuORF;nc|ENSG00000170515|Q9UQ80-2|PA2G4;ENSG00000170515|ENST00000303305|PA2G4	ENST00000414718.1_1_20:12361512-12361782:+|nuORF	ENST00000414718.1_1_20:12361512-12361782:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.76513671875	2	527.763832	1053.51311	-0.65092	-0.00034353	0.77625	0.00040967	0.12532	6.6141E-05	527.7641334116021	90.534	1.3286	87.959	87.501	88.829	-2.575					69	25	4	0	0	0	0.14855	2	7809	7798;7809		85.161	3.0379	1	396500			22522	7112	18419	18442	24961;24962	24962					-0.011505363107289668
KEGEFVAQF	9	Unmodified	_KEGEFVAQF_					0	0	0		ENST00000414718.1_1_20:12361512-12361782:+|nuORF;nc|ENSG00000170515|Q9UQ80-2|PA2G4;ENSG00000170515|ENST00000303305|PA2G4	ENST00000414718.1_1_20:12361512-12361782:+|nuORF	ENST00000414718.1_1_20:12361512-12361782:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	527.763832	1053.51311	1.3782	0.00072736	-1.0655	-0.00056232	0.31272	0.00016504	527.7631048519621	89.313	1.6821	87.946	87.329	89.011	-1.3676	0.020637	-0.0015652	NaN	85.161	88	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222520			22523	7112	18419	18442							-0.011505363107289668
KEGEFVAQF	9	Unmodified	_KEGEFVAQF_					0	0	0		ENST00000414718.1_1_20:12361512-12361782:+|nuORF;nc|ENSG00000170515|Q9UQ80-2|PA2G4;ENSG00000170515|ENST00000303305|PA2G4	ENST00000414718.1_1_20:12361512-12361782:+|nuORF	ENST00000414718.1_1_20:12361512-12361782:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	527.763832	1053.51311	-0.98254	-0.00051855	1.2493	0.00065931	0.26671	0.00014076	527.7644555424588	89.951	1.5341	87.87	87.439	88.973	-2.0805	-0.054868	0.00087807	NaN	85.161	81	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	410260			22524	7112	18419	18442							-0.011505363107289668
KEGFPITAL	9	Unmodified	_KEGFPITAL_					0	0	0		ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9	ENSG00000136807|ENST00000373264|CDK9	ENSG00000136807|ENST00000373264|CDK9	MULTI-MSMS	OvCa9_classI_Rep2	2	488.2789611816406	2	488.279118	974.543683	-0.5288	-0.0002582	0.51997	0.00025389	-0.0088288	-4.3109E-06	488.27920793179874	103.4	1.5829	102.71	102.38	103.96	-0.68459					65	31	4	0	0	0	0.16562	2	9545	9539;9545		82.241	0	1	313430			22525	4514	18420	18443	24963;24964	24964					0.05539242074314643
KEGFPITAL	9	Unmodified	_KEGFPITAL_					0	0	0		ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9	ENSG00000136807|ENST00000373264|CDK9	ENSG00000136807|ENST00000373264|CDK9	MULTI-MSMS	OvCa9_classI_Rep3	3	488.2791442871094	2	488.279118	974.543683	-0.083416	-4.073E-05	0.030642	1.4962E-05	-0.052774	-2.5769E-05	488.2789678712929	104.17	1.3531	102.74	102.39	103.75	-1.4347					67	25	4	0	0	0	0.22621	2	7256	7248;7256		71.877	0	1	406870			22526	4514	18420	18443	24965;24966	24966					0.05539242074314643
KEGFPITAL	9	Unmodified	_KEGFPITAL_					0	0	0		ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9	ENSG00000136807|ENST00000373264|CDK9	ENSG00000136807|ENST00000373264|CDK9	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.2782287597656	2	488.279118	974.543683	-0.14274	-6.9698E-05	0.11966	5.8427E-05	-0.023083	-1.1271E-05	488.2790371348919	104.84	1.4704	102.72	102.32	103.79	-2.1192					62	28	3	0	0	0	0.1804	1	9495	9495		79.713	0	1	366640			22527	4514	18420	18443	24967	24967					0.05539242074314643
KEGIAARVR	9	Unmodified	_KEGIAARVR_					0	0	0		ENSG00000226650|ENST00000435029|KIF4B	ENSG00000226650|ENST00000435029|KIF4B	ENSG00000226650|ENST00000435029|KIF4B	MULTI-MSMS	OvCa9_classI_Rep2	2	500.3059997558594	2	500.306532	998.598512	1.8295	0.00091529	-2.0216	-0.0010114	-0.1921	-9.611E-05	500.3053685545666	27.721	1.1711	25.012	24.828	25.999	-2.7097					57	25	3	0	0	0	0.28934	1	501	501		64.207	3.2353	1	318060			22528	9272	18421	18444	24968	24968					0.09915673665602753
KEGIVKLK	8	Unmodified	_KEGIVKLK_					0	0	0		PTPN9|p.E308Dfs*6|1|0.11|ENSG00000169410|chr15:75505719-75505720|-/G|frameshift_variant;ENSG00000169410|ENST00000618819|PTPN9	PTPN9|p.E308Dfs*6|1|0.11|ENSG00000169410|chr15:75505719-75505720|-/G|frameshift_variant	PTPN9|p.E308Dfs*6|1|0.11|ENSG00000169410|chr15:75505719-75505720|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.75946044921875	2	457.805303	913.596052	-0.052742	-2.4146E-05	0.010943	5.01E-06	-0.041799	-1.9136E-05	457.80526047555395	59.039	0.55268	55.647	55.4	55.953	-3.392					14	10	2	0	0	0	0.028476	1	3944	3944		45.972	6.7194	1	16626			22529	7007	18422	18445	24969	24969					0.13579825207932572
KEGKAKKPE	9	Unmodified	_KEGKAKKPE_					0	0	0		LIG1|p.T614Ifs*112|1|0.04|ENSG00000105486|chr19:48128003-48128004|-/GGAGGCGGAGGTTGCAGTGAGCTGAGATC|frameshift_variant;nc|ENSG00000105486|P18858-2|LIG1;ENSG00000105486|ENST00000263274|LIG1;ENST00000599165.5_1_19:48654500-48673536:-|nuORF	LIG1|p.T614Ifs*112|1|0.04|ENSG00000105486|chr19:48128003-48128004|-/GGAGGCGGAGGTTGCAGTGAGCTGAGATC|frameshift_variant	LIG1|p.T614Ifs*112|1|0.04|ENSG00000105486|chr19:48128003-48128004|-/GGAGGCGGAGGTTGCAGTGAGCTGAGATC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7732238769531	2	507.800749	1013.58694	-0.51263	-0.00026032	0.29023	0.00014738	-0.2224	-0.00011294	507.80055462055793	52.185	0.43475	52.185	51.912	52.347	0					21	9	3	0	0	0	0.027462	1	4061	4061		20.947	0	1	435170			22530	2463	18423	18446	24970	24970					0.08069431851606623
KEGKPPISV	9	Unmodified	_KEGKPPISV_					0	0	0		ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	MULTI-MSMS	OvCa9_classI_Rep2	2	477.7850341796875	2	477.784567	953.554582	-1.3623	-0.00065089	1.0601	0.00050652	-0.30217	-0.00014437	477.78500123500345	52.573	1.6304	49.76	49.196	50.826	-2.8129					73	32	4	0	0	0	0.26076	1	3515	3515		67.494	18.052	1	300580			22531	1484	18424	18447	24971	24971					0.07594644448613508
KEGKPPISV	9	Unmodified	_KEGKPPISV_					0	0	0		ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.7854309082031	2	477.784567	953.554582	-0.37968	-0.0001814	0.24244	0.00011584	-0.13723	-6.5567E-05	477.7846322919029	52.85	1.9246	49.642	49.298	51.222	-3.208					72	37	3	0	0	0	0.1944	2	3190	3190;3203		77.318	27.876	1	1085400			22532	1484	18424	18447	24972;24973	24972					0.07594644448613508
KEGKPVNI	8	Unmodified	_KEGKPVNI_					0	0	0			REV__tr|A0A7D7A290|A0A7D7A290_9CLOTDiscoidindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07485PE=3SV=1	REV__tr|A0A7D7A290|A0A7D7A290_9CLOTDiscoidindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07485PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	442.8812255859375	2	442.763635	883.512717	0.24606	0.00010895	2.5363	0.001123	2.7824	0.0012319	442.76330108015156	43.492	0.38224	43.492	43.312	43.694	0					20	8	3	0	0	0	0.028476	1	2864	2864		30.504	6.3009	1	110440	+		22533	32528	18425	18448	24974	24974					0.06630088760084618
KEGLSVKEP	9	Unmodified	_KEGLSVKEP_					0	0	0		ENST00000497920.1_1_2:97215573-97218047:+|nuORF;nc|ENSG00000196843|Q03989-5|ARID5A;ENSG00000196843|ENST00000357485|ARID5A	ENST00000497920.1_1_2:97215573-97218047:+|nuORF	ENST00000497920.1_1_2:97215573-97218047:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.76666259765625	2	493.779482	985.544411	1.5132	0.00074718	-1.9892	-0.00098223	-0.47602	-0.00023505	493.7783300201537	67.567	0.49522	64.076	63.789	64.284	-3.4902					17	9	2	0	0	0	0.027462	1	4994	4994		37.812	4.3185	1	175140			22534	12818	18426	18449	24975	24975					0.05106036723384477
KEGPEGANL	9	Unmodified	_KEGPEGANL_					0	0	0		nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2	nc|ENSG00000149187|Q92879-5|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	MULTI-MSMS	OvCa99_classI_Rep5	1	457.73236083984375	2	457.732532	913.45051	-0.0022327	-1.022E-06	-0.12064	-5.522E-05	-0.12287	-5.6242E-05	457.73238563513803	44.926	0.79187	44.926	44.662	45.454	0					48	17	4	0	0	0	0.18887	1	3082	3082		78.264	9.477	1	4460400			22535	1160	18427	18450	24976	24976					-0.009676823789163791
KEGRKKSIR	9	Unmodified	_KEGRKKSIR_					0	0	0		ENST00000464458.1_1_2:95770271-95772347:-|nuORF;ENST00000475895.5_1_2:95770271-95787536:-|nuORF;ENSG00000144029|ENST00000272418|MRPS5	ENST00000464458.1_1_2:95770271-95772347:-|nuORF	ENST00000464458.1_1_2:95770271-95772347:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.288818359375	2	551.346189	1100.67783	-0.44977	-0.00024798	2.7754	0.0015302	2.3256	0.0012822	551.3476028370017	40.787	0.53297	40.787	40.526	41.059	0					23	11	3	0	0	0	0.027462	1	2530	2530		25.574	0.12388	1	273520			22536	5120	18428	18451	24977	24977					0.1315132061974964
KEGRNIALIR	10	Unmodified	_KEGRNIALIR_					0	0	0			REV__tr|A0A7D6VRE0|A0A7D6VRE0_9CLOTRNA-bindingtranscriptionalaccessoryproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19060PE=4SV=1	REV__tr|A0A7D6VRE0|A0A7D6VRE0_9CLOTRNA-bindingtranscriptionalaccessoryproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19060PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	586.2962036132812	2	585.359296	1168.70404	-0.93364	-0.00054651	0.45936	0.00026889	-0.47428	-0.00027762	585.3593949147502	39.887	0.39732	36.933	36.715	37.112	-2.9541					15	7	3	0	0	0	0.026849	1	1654	1654		32.812	3.6629	1	29835	+		22537	31407	18429	18452	24978	24978					0.12643589791196064
KEGRNIALIR	10	Unmodified	_KEGRNIALIR_					0	0	0			REV__tr|A0A7D6VRE0|A0A7D6VRE0_9CLOTRNA-bindingtranscriptionalaccessoryproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19060PE=4SV=1	REV__tr|A0A7D6VRE0|A0A7D6VRE0_9CLOTRNA-bindingtranscriptionalaccessoryproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19060PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	585.359296	1168.70404	-0.68057	-0.00039838	1.2368	0.00072399	0.55626	0.00032561	585.3598013670049	39.825	0.39779	37.116	36.854	37.252	-2.7097	0.091369	0.00041466	NaN	32.812	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10829	+		22538	31407	18429	18452							0.12643589791196064
KEGSPLHKQS	10	Unmodified	_KEGSPLHKQS_					0	0	0		ENSG00000106665|ENST00000223398|CLIP2;nc|ENSG00000106665|Q9UDT6-2|CLIP2	ENSG00000106665|ENST00000223398|CLIP2	ENSG00000106665|ENST00000223398|CLIP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.8019409179688	2	555.798737	1109.58292	0.17713	9.8446E-05	3.6214	0.0020128	3.7985	0.0021112	555.8006471670411	98.876	1.1382	96.55	96.177	97.315	-2.3253					57	20	4	0	0	0	0.6898	1	8808	8808		31.634	2.4847	1	265400			22539	2569	18430	18453	24979	24979					0.03251342357884823
KEGSPLHKQS	10	Unmodified	_KEGSPLHKQS_					0	0	0		ENSG00000106665|ENST00000223398|CLIP2;nc|ENSG00000106665|Q9UDT6-2|CLIP2	ENSG00000106665|ENST00000223398|CLIP2	ENSG00000106665|ENST00000223398|CLIP2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	555.798737	1109.58292	0.64563	0.00035884	2.6834	0.0014915	3.3291	0.0018503	555.8000801237824	97.367	1.2295	96.408	95.921	97.15	-0.95857	-0.079405	-0.00082203	NaN	31.634	59	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244670			22540	2569	18430	18453							0.03251342357884823
KEGSPLHKQS	10	Unmodified	_KEGSPLHKQS_					0	0	0		ENSG00000106665|ENST00000223398|CLIP2;nc|ENSG00000106665|Q9UDT6-2|CLIP2	ENSG00000106665|ENST00000223398|CLIP2	ENSG00000106665|ENST00000223398|CLIP2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	555.798737	1109.58292	-0.73503	-0.00040853	4.3622	0.0024245	3.6272	0.002016	555.8010359202085	98.264	1.2889	96.504	96.06	97.349	-1.7595	0.016649	0.0010441	NaN	31.634	63	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263330			22541	2569	18430	18453							0.03251342357884823
KEGSVGLSVQ	10	Unmodified	_KEGSVGLSVQ_					0	0	0		ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	ENSG00000097046|ENST00000234626|CDC7	MULTI-MSMS	OvCa99_classI_Rep5	1	502.2746887207031	2	502.274564	1002.53457	-0.13059	-6.5593E-05	-0.23713	-0.0001191	-0.36772	-0.0001847	502.27431633265826	30.605	0.54659	30.605	30.383	30.93	0					22	10	3	0	0	0	0.49595	1	1193	1193		54.722	1.7857	1	480440			22542	1956	18431	18454	24980	24980					0.03340848718005418
KEGSVYEIDD	10	Unmodified	_KEGSVYEIDD_					0	0	0		tr|A0A7D6ZRP7|A0A7D6ZRP7_9CLOTABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04555PE=3SV=1	tr|A0A7D6ZRP7|A0A7D6ZRP7_9CLOTABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04555PE=3SV=1	tr|A0A7D6ZRP7|A0A7D6ZRP7_9CLOTABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04555PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.3081665039062	2	577.764226	1153.5139	-1.0252	-0.00059233	-4.3058	-0.0024877	-5.331	-0.0030801	577.7616027713991	39.873	0.25924	39.873	39.756	40.016	0					9	5	2	0	0	0	0.026931	1	2376	2376		30.318	1.1477	1	123260			22543	35718	18432	18455	24981	24981					-0.05671786452330707
KEGVIIEIL	9	Unmodified	_KEGVIIEIL_					0	0	0		nc|ENSG00000276850|P13928-2|ANXA8;nc|ENSG00000276850|P13928-3|ANXA8;ENSG00000265190|ENST00000585281|ANXA8;ENSG00000264230|ENST00000619162|ANXA8L1	nc|ENSG00000276850|P13928-2|ANXA8	nc|ENSG00000276850|P13928-2|ANXA8	MULTI-MSMS	OvCa9_classI_Rep3	3	507.31591796875	2	507.3157	1012.61685	-0.96298	-0.00048854	0.6153	0.00031215	-0.34769	-0.00017639	507.3158623915197	117.79	1.8845	116.76	116.44	118.32	-1.0324					99	37	4	0	0	0	0.26076	1	8879	8879		67.494	2.0283	1	576140			22544	9517	18433	18456	24982	24982					0.11104370796954299
KEGVQGPL	8	Unmodified	_KEGVQGPL_					0	0	0		ENSG00000047410|ENST00000367478|TPR;ENST00000481347.1_1_1:186312376-186313186:-|nuORF	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	OvCa99_classI_Rep5	1	414.2347412109375	2	414.23471	826.454868	-0.47886	-0.00019836	0.48642	0.00020149	0.0075551	3.1296E-06	414.23485305276495	43.758	1.9748	43.758	43.521	45.496	0					69	44	4	0	0	0	0.53531	1	2927	2927		73.975	2.679	1	7601400			22545	1144	18434	18457	24983	24983					0.03469826834657397
KEHEAMKDEL	10	Unmodified	_KEHEAMKDEL_					0	0	0		nc|ENSG00000197614|Q13361-2|MFAP5;ENSG00000197614|ENST00000359478|MFAP5	nc|ENSG00000197614|Q13361-2|MFAP5	nc|ENSG00000197614|Q13361-2|MFAP5	MULTI-MSMS	OvCa99_classI_Rep5	1	615.2950439453125	2	615.29517	1228.57579	-0.71741	-0.00044142	0.71376	0.00043917	-0.0036583	-2.251E-06	615.2954970924767	35.028	0.61058	35.028	34.864	35.475	0					32	12	4	0	0	0	0.03671	1	1738	1738		122.94	57.474	1	896560			22546	8729	18435	18458	24984	24984					-0.029357583048295055
KEHERNSYPQ	10	Unmodified	_KEHERNSYPQ_					0	0	0		nc|ENSG00000173681|A2AJT9-3|BCLAF3;nc|ENSG00000173681|A2AJT9-2|BCLAF3;ENSG00000173681|ENST00000379682|BCLAF3	nc|ENSG00000173681|A2AJT9-3|BCLAF3	nc|ENSG00000173681|A2AJT9-3|BCLAF3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	429.9260559082031	3	429.874064	1286.60036	0.38146	0.00016398	1.99	0.00085543	2.3714	0.0010194	429.875399640754	52.186	0.25217	48.978	48.893	49.145	-3.208					6	4	2	0	0	0	0.027115	1	3101	3101		24.232	0	1	14833			22547	7404	18436	18459	24985	24985					-0.03147362107097251
KEHGLKPVVGE	11	Unmodified	_KEHGLKPVVGE_					0	0	0		ENSG00000163975|ENST00000296350|MELTF;ENST00000473501.1_1_3:196753297-196754890:-|nuORF;nc|ENSG00000163975|P08582-2|MELTF	ENSG00000163975|ENST00000296350|MELTF	ENSG00000163975|ENST00000296350|MELTF	MULTI-SECPEP	OvCa99_classI_Rep5	1	597.3848876953125	2	596.837862	1191.66117	-0.26668	-0.00015917	1.0409	0.00062125	0.77422	0.00046209	596.8385060731537	33.552	0.58441	33.552	33.384	33.969	0					24	11	3	0	0	0	0.025864	1	1560	1560		26.063	0	1	122150			22548	6391	18437	18460	24986	24986					0.07300774943132637
KEHGPENIVM	10	Unmodified	_KEHGPENIVM_					0	0	0		ENST00000580361.1_1_18:9814067-9815220:+|nuORF;ENST00000578737.5_1_18:9792160-9816141:+|nuORF;ENSG00000168461|ENST00000578921|RAB31	ENST00000580361.1_1_18:9814067-9815220:+|nuORF	ENST00000580361.1_1_18:9814067-9815220:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	577.2887573242188	2	577.287148	1152.55974	-0.74584	-0.00043056	0.49757	0.00028724	-0.24827	-0.00014332	577.2873240891619	55.175	0.91265	55.175	54.891	55.804	0					46	21	3	0	0	0	0.4826	2	4489	4489;4518		56.632	3.6955	1	4655400			22549	6910	18438	18461	24987;24988	24987					-0.010434197510676313
KEHIRTLELI	10	Unmodified	_KEHIRTLELI_					0	0	0		tr|A0A7D7A1V5|A0A7D7A1V5_9CLOTflagellarmotorswitchproteinFliMOS=ClostridiumintestinaleOX=36845GN=fliMPE=3SV=1	tr|A0A7D7A1V5|A0A7D7A1V5_9CLOTflagellarmotorswitchproteinFliMOS=ClostridiumintestinaleOX=36845GN=fliMPE=3SV=1	tr|A0A7D7A1V5|A0A7D7A1V5_9CLOTflagellarmotorswitchproteinFliMOS=ClostridiumintestinaleOX=36845GN=fliMPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	417.9063720703125	3	417.918834	1250.73467	-0.80006	-0.00033436	1.3344	0.00055767	0.53435	0.00022332	417.9194707016494	51.157	0.24937	48.363	48.222	48.472	-2.794					9	4	3	0	0	0	0.027001	1	3323	3323		16.007	0	1	11350			22550	36049	18439	18462	24989	24989					0.11933323385642325
KEHPVKQEL	9	Unmodified	_KEHPVKQEL_					0	0	0		ENSG00000197223|ENST00000410067|C1D	ENSG00000197223|ENST00000410067|C1D	ENSG00000197223|ENST00000410067|C1D	MULTI-MSMS	OvCa99_classI_Rep5	1	554.3113403320312	2	554.31148	1106.60841	-0.13719	-7.6048E-05	0.17221	9.546E-05	0.03502	1.9412E-05	554.3114001261475	30.061	0.49891	30.061	29.835	30.334	0					20	9	3	0	0	0	0.033166	1	1122	1122		132.76	38.751	1	503390			22551	8690	18440	18463	24990	24990					0.05936816880330298
KEHQVFRA	8	Unmodified	_KEHQVFRA_					0	0	0		nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7732238769531	2	507.777608	1013.54066	-0.65988	-0.00033507	0.30172	0.00015321	-0.35816	-0.00018186	507.7775809552443	51.97	0.58998	51.97	51.669	52.259	0					20	13	2	0	0	0	0.028476	1	4061	4061		17.365	0	1	342430			22552	8525	18441	18464	24991	24991					0.034434117401815456
KEHTLLHDI	9	Unmodified	_KEHTLLHDI_					0	0	0			REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.2938842773438	2	553.303655	1104.59276	-0.35613	-0.00019705	-4.4102	-0.0024402	-4.7664	-0.0026373	553.8009320075106	63.424	0.6763	59.949	59.433	60.109	-3.475					21	13	2	0	0	0	0.027462	1	4444	4444		37.812	4.9991	1	72482	+		22553	19775	18442	18465	24992	24992					0.044645303632933064
KEHVEQSSR	9	Unmodified	_KEHVEQSSR_					0	0	0			REV__chr12:6869390-6870055|101|194.79|0.0|24.22|+|0|TPI1,None|1	REV__chr12:6869390-6870055|101|194.79|0.0|24.22|+|0|TPI1,None|1	MSMS	OvCa9_classI_Rep4_	4	550.3515014648438	2	550.278169	1098.54179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.237	1	18.898	18.398	19.398	-1.3386								0	0	0	0.16939	1	27	27		52.937	5.2794	1		+		22554	15889	18443	18466	24993	24993					-0.003544186815588546
KEHVIEAL	8	Unmodified	_KEHVIEAL_					0	0	0		ENST00000444036.1_1_21:34213912-34214044:-|nuORF;ENST00000431607.1_1_9:119942983-119943337:-|nuORF;ENST00000491035.5_1_X:153628724-153629192:+|nuORF;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENSG00000147403|ENST00000369817|RPL10	ENST00000444036.1_1_21:34213912-34214044:-|nuORF	ENST00000444036.1_1_21:34213912-34214044:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	469.7705383300781	2	469.768917	937.523281	0.59689	0.0002804	-1.3446	-0.00063163	-0.74767	-0.00035123	469.76812540663343	61.629	1.5368	58.172	57.866	59.403	-3.4577					65	31	4	0	0	0	0.22496	2	4239	4228;4239		120.62	46.366	1	637770			22555	5353	18444	18467	24994;24995	24995					0.052020714145328384
KEHVIEAL	8	Unmodified	_KEHVIEAL_					0	0	0		ENST00000444036.1_1_21:34213912-34214044:-|nuORF;ENST00000431607.1_1_9:119942983-119943337:-|nuORF;ENST00000491035.5_1_X:153628724-153629192:+|nuORF;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENSG00000147403|ENST00000369817|RPL10	ENST00000444036.1_1_21:34213912-34214044:-|nuORF	ENST00000444036.1_1_21:34213912-34214044:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	469.768917	937.523281	-1.0532	-0.00049476	0.83162	0.00039067	-0.22158	-0.00010409	469.76914794023486	60.823	1.5758	58.053	57.501	59.077	-2.7702	-0.059585	0.00079834	NaN	120.62	71	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	313870			22556	5353	18444	18467							0.052020714145328384
KEHVIEKEEL	10	Unmodified	_KEHVIEKEEL_					0	0	0		ENSG00000115993|ENST00000332624|TRAK2	ENSG00000115993|ENST00000332624|TRAK2	ENSG00000115993|ENST00000332624|TRAK2	MULTI-MSMS	OvCa99_classI_Rep5	1	418.5628662109375	3	418.562715	1252.66632	0.026344	1.1026E-05	-0.16112	-6.744E-05	-0.13478	-5.6414E-05	418.56263092132	41.358	0.70454	41.358	41.104	41.809	0					31	15	3	0	0	0	0.13338	1	2574	2574		105.17	36.539	1	1167400			22557	3146	18445	18468	24996	24996					0.050090340150973134
KEHVPKLPE	9	Unmodified	_KEHVPKLPE_					0	0	0		tr|A0A553SLA2|A0A553SLA2_NIACIYprBribonucleaseH-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20275PE=4SV=1	tr|A0A553SLA2|A0A553SLA2_NIACIYprBribonucleaseH-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20275PE=4SV=1	tr|A0A553SLA2|A0A553SLA2_NIACIYprBribonucleaseH-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20275PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.7692260742188	2	538.808574	1075.60259	0.53793	0.00028984	3.0016	0.0016173	3.5396	0.0019071	538.8086270433408	72.228	0.4472	72.228	72.086	72.533	0					18	10	2	0	0	0	0.02744	1	7066	7066		44.377	5.1244	1	393300			22558	33704	18446	18469	24997	24997					0.06781718368665679
KEHVQNYVLT	10	Unmodified	_KEHVQNYVLT_					0	0	0		nc|ENSG00000138316|Q8WXS8-2|ADAMTS14;nc|ENSG00000138316|Q8WXS8-3|ADAMTS14;ENSG00000138316|ENST00000373207|ADAMTS14;nc|ENSG00000138316|Q8WXS8-4|ADAMTS14	nc|ENSG00000138316|Q8WXS8-2|ADAMTS14	nc|ENSG00000138316|Q8WXS8-2|ADAMTS14	MULTI-MSMS	OvCa9_classI_Rep2	2	615.8269653320312	2	615.827495	1229.64044	-0.21741	-0.00013388	-0.36626	-0.00022555	-0.58366	-0.00035943	615.827156884002	80.491	2.1586	78.796	78.025	80.184	-1.6951					139	42	5	0	0	0	0.3094	2	6761	6761;6798		79.713	4.6693	1	852640			22559	4673	18447	18470	24998;24999	24998					0.034801845634547135
KEHVQNYVLT	10	Unmodified	_KEHVQNYVLT_					0	0	0		nc|ENSG00000138316|Q8WXS8-2|ADAMTS14;nc|ENSG00000138316|Q8WXS8-3|ADAMTS14;ENSG00000138316|ENST00000373207|ADAMTS14;nc|ENSG00000138316|Q8WXS8-4|ADAMTS14	nc|ENSG00000138316|Q8WXS8-2|ADAMTS14	nc|ENSG00000138316|Q8WXS8-2|ADAMTS14	MULTI-MSMS	OvCa9_classI_Rep3	3	615.8286743164062	2	615.827495	1229.64044	0.98553	0.00060692	-1.4302	-0.00088077	-0.44469	-0.00027385	615.8265545245539	80.841	2.0776	78.519	78.131	80.209	-2.3226					126	40	5	0	0	0	0.15262	1	4463	4463		101.6	5.7855	1	2601000			22560	4673	18447	18470	25000	25000					0.034801845634547135
KEIAAVIETV	10	Unmodified	_KEIAAVIETV_					0	0	0		ENSG00000188243|ENST00000682242|COMMD6;nc|ENSG00000188243|Q7Z4G1-2|COMMD6	ENSG00000188243|ENST00000682242|COMMD6	ENSG00000188243|ENST00000682242|COMMD6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.8392333984375	2	536.816064	1071.61758	-1.5772	-0.00084665	0.98534	0.00052895	-0.59182	-0.0003177	536.8165356883926	94.985	1.5066	92.516	92.06	93.566	-2.4685					56	29	3	0	0	0	0.027754	1	8333	8333		109.44	41.945	1	152170			22561	8459	18448	18471	25001	25001					0.08463165446005405
KEIADTLQI	9	Unmodified	_KEIADTLQI_					0	0	0			REV__tr|A0A553SIT6|A0A553SIT6_NIACIUTP--glucose-1-phosphateuridylyltransferaseOS=NialliacirculansOX=1397GN=galUPE=3SV=1	REV__tr|A0A553SIT6|A0A553SIT6_NIACIUTP--glucose-1-phosphateuridylyltransferaseOS=NialliacirculansOX=1397GN=galUPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.794921875	2	515.792589	1029.57063	-1.9313	-0.00099614	0.47675	0.0002459	-1.4545	-0.00075024	515.7926460213846	87.606	1.1099	84.979	84.748	85.858	-2.6269					57	21	4	0	0	0	0.083631	1	7460	7460		101.6	0	1	530840	+		22562	29926	18449	18472	25002	25002					0.057023058948516336
KEIAEKSTV	9	Unmodified	_KEIAEKSTV_					0	0	0			REV__ENSG00000074356|ENST00000389005|NCBP3	REV__ENSG00000074356|ENST00000389005|NCBP3	MULTI-MSMS	OvCa99_classI_Rep5	1	502.78436279296875	2	502.784764	1003.55498	-0.15555	-7.8208E-05	0.027035	1.3593E-05	-0.12851	-6.4615E-05	502.7845089554735	44.932	0.84848	44.932	44.44	45.289	0					42	18	4	0	0	0	0.094616	1	3065	3065		98.629	5.0318	1	1490900	+		22563	16949	18450	18473	25003	25003					0.05334019377812638
KEIDEVGDLL	10	Unmodified	_KEIDEVGDLL_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	OvCa99_classI_Rep5	1	565.801513671875	2	565.800611	1129.58667	-0.24399	-0.00013805	-0.59049	-0.0003341	-0.83448	-0.00047215	565.8000432701351	104.67	0.9478	104.67	104.36	105.31	0					69	21	6	0	0	0	0.10592	2	11758	11728;11758		112.11	32.656	1	5570300			22564	2088	18451	18474	25004;25005	25005					0.027059673411031326
KEIDILPTQL	10	Unmodified	_KEIDILPTQL_					0	0	0		ENST00000473301.1_1_7:95224333-95225617:-|nuORF;ENSG00000004799|ENST00000005178|PDK4	ENST00000473301.1_1_7:95224333-95225617:-|nuORF	ENST00000473301.1_1_7:95224333-95225617:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	585.34375	2	585.342446	1168.67034	0.49026	0.00028697	1.468	0.00085929	1.9583	0.0011463	585.3431646749953	114.9	0.74304	114.9	114.6	115.35	0					52	15	4	0	0	0	0.10517	2	13130	13108;13130		112.3	29.545	1	2398800			22565	833	18452	18475	25006;25007	25007					0.09275123508814431
KEIDILPTQL	10	Unmodified	_KEIDILPTQL_					0	0	0		ENST00000473301.1_1_7:95224333-95225617:-|nuORF;ENSG00000004799|ENST00000005178|PDK4	ENST00000473301.1_1_7:95224333-95225617:-|nuORF	ENST00000473301.1_1_7:95224333-95225617:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	585.3419189453125	2	585.342446	1168.67034	-0.23709	-0.00013878	0.29599	0.00017326	0.058909	3.4482E-05	585.342383471999	114.45	1.3322	114.33	114.01	115.34	-0.11777					65	26	4	0	0	0	0.084482	5	10888	10879;10882;10888;10894;10903		117.53	46.71	1	346110			22566	833	18452	18475	25008;25009;25010;25011;25012	25010					0.09275123508814431
KEIDILPTQL	10	Unmodified	_KEIDILPTQL_					0	0	0		ENST00000473301.1_1_7:95224333-95225617:-|nuORF;ENSG00000004799|ENST00000005178|PDK4	ENST00000473301.1_1_7:95224333-95225617:-|nuORF	ENST00000473301.1_1_7:95224333-95225617:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	585.3414916992188	2	585.342446	1168.67034	-1.6744	-0.00098009	1.437	0.00084111	-0.23742	-0.00013897	585.3430250313847	115.19	1.3813	114.14	113.85	115.23	-1.055					68	27	4	0	0	0	0.027228	6	8549	8534;8537;8543;8549;8556;8562		139.38	33.131	1	337920			22567	833	18452	18475	25013;25014;25015;25016;25017;25018	25016					0.09275123508814431
KEIDILPTQL	10	Unmodified	_KEIDILPTQL_					0	0	0		ENST00000473301.1_1_7:95224333-95225617:-|nuORF;ENSG00000004799|ENST00000005178|PDK4	ENST00000473301.1_1_7:95224333-95225617:-|nuORF	ENST00000473301.1_1_7:95224333-95225617:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	585.3414916992188	2	585.342446	1168.67034	-0.27133	-0.00015882	0.069079	4.0435E-05	-0.20225	-0.00011839	585.3421704115536	115.44	1.4924	114.05	113.77	115.26	-1.3977					74	29	4	0	0	0	0.1266	3	10749	10738;10749;10762		106.88	21.018	1	409870			22568	833	18452	18475	25019;25020;25021	25020					0.09275123508814431
KEIDKEEHL	9	Unmodified	_KEIDKEEHL_					0	0	0		nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENSG00000179222|ENST00000326587|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51640434-51640983:+|nuORF;ENSG00000187243|ENST00000335504|MAGED4B;nc|ENSG00000187243|Q96JG8-4|MAGED4;ENSG00000154545|ENST00000471932|MAGED4;nc|ENSG00000187243|Q96JG8-2|MAGED4;ENST00000470594.5_1_X:51805328-51809606:-|nuORF;ENST00000479281.5_1_X:51931784-51932886:+|nuORF	nc|ENSG00000179222|Q9Y5V3-2|MAGED1	nc|ENSG00000179222|Q9Y5V3-2|MAGED1	MULTI-MSMS	OvCa99_classI_Rep5	1	570.7982177734375	2	570.798403	1139.58225	-0.89579	-0.00051131	0.070595	4.0296E-05	-0.82519	-0.00047102	570.798442248721	34.089	1.8798	34.089	33.873	35.753	0					105	39	5	0	0	0	0.010478	2	1630	1606;1630		167.23	68.599	1	10865000			22569	7811	18453	18476	25022;25023	25023					0.018045029182076178
KEIDKNDHL	9	Unmodified	_KEIDKNDHL_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MULTI-MSMS	OvCa99_classI_Rep5	1	556.2905883789062	2	556.290745	1110.56694	0.2541	0.00014135	-0.53128	-0.00029555	-0.27719	-0.0001542	556.2904127910107	31.051	1.2741	31.051	30.682	31.956	0					52	25	5	0	0	0	0.029147	2	1240	1240;1262		136.27	32.211	1	1521900			22570	2236	18454	18477	25024;25025	25024					0.01607636120979805
KEIDMLLKE	9	Unmodified	_KEIDMLLKE_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-SECPEP	OvCa9_classI_Rep2	2	559.3575439453125	2	559.809925	1117.6053	0.71067	0.00039784	-1.319	-0.00073838	-0.60832	-0.00034054	559.8089891192411	96.76	1.0319	95.801	95.53	96.562	-0.95857					36	20	2	0	0	0	0.027452	1	8807	8807		49.536	3.5638	1	117740			22571	5511	18455	18478	25026	25026					0.05119805711319714
KEIDVVAPLVK	11	Unmodified	_KEIDVVAPLVK_					0	0	0			REV__ENSG00000080200|ENST00000389622|CRYBG3	REV__ENSG00000080200|ENST00000389622|CRYBG3	MULTI-MSMS	OvCa9_classI_Rep4_	4	605.8705444335938	2	605.873914	1209.73327	-4.8731	-0.0029525	1.7175	0.0010406	-3.1556	-0.0019119	605.8747875580638	157.58	1.169	156.04	155.73	156.9	-1.545					92	31	4	0	0	0	0.68399	1	15614	15614		35.152	10.633	1	205220	+		22572	17051	18456	18479	25027	25027					0.13679689296827746
KEIEAEKVEL	10	Unmodified	_KEIEAEKVEL_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	OvCa99_classI_Rep5	1	594.3291015625	2	594.329536	1186.64452	-0.09362	-5.5641E-05	0.41844	0.00024869	0.32482	0.00019305	594.3292985337068	63.695	0.55941	63.695	63.414	63.974	0					23	13	2	0	0	0	0.029272	1	5738	5738		136.99	10.747	1	1346700			22573	7361	18457	18480	25028	25028					0.05866229266553091
KEIEDFDSL	9	Unmodified	_KEIEDFDSL_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1;RANGAP1|p.E193Lfs*12|1|0.07|ENSG00000100401|chr22:41261484-41261485|-/AAAACCCCGTCTCTAATAAAAATACAAAAATTAG|frameshift_variant;RANGAP1-PMM1|1|fusion	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	548.2670288085938	2	548.263862	1094.51317	2.8652	0.0015709	-0.67817	-0.00037182	2.187	0.0011991	548.2635027260397	89.84	0.74664	89.84	89.6	90.346	0					35	17	3	0	0	0	0.0085876	2	9604	9604;9628		176.44	14.547	1	6773700			22574	2063	18458	18481	25029;25030	25029					-0.030305811013704442
KEIEDFDSL	9	Unmodified	_KEIEDFDSL_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1;RANGAP1|p.E193Lfs*12|1|0.07|ENSG00000100401|chr22:41261484-41261485|-/AAAACCCCGTCTCTAATAAAAATACAAAAATTAG|frameshift_variant;RANGAP1-PMM1|1|fusion	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	548.263862	1094.51317	1.2556	0.00068842	-1.7322	-0.00094972	-0.47661	-0.00026131	548.2629109747452	91.389	1.2138	90.153	89.795	91.009	-1.2355	0.085542	-0.0011242	NaN	176.44	57	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91267			22575	2063	18458	18481							-0.030305811013704442
KEIEDFDSL	9	Unmodified	_KEIEDFDSL_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1;RANGAP1|p.E193Lfs*12|1|0.07|ENSG00000100401|chr22:41261484-41261485|-/AAAACCCCGTCTCTAATAAAAATACAAAAATTAG|frameshift_variant;RANGAP1-PMM1|1|fusion	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	548.263862	1094.51317	-1.6694	-0.00091529	-0.019047	-1.0443E-05	-1.6885	-0.00092574	548.2637945265066	92.136	1.2779	90.112	89.788	91.066	-2.0241	0.044408	0.00075432	NaN	176.44	46	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	273420			22576	2063	18458	18481							-0.030305811013704442
KEIEDFDSL	9	Unmodified	_KEIEDFDSL_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1;RANGAP1|p.E193Lfs*12|1|0.07|ENSG00000100401|chr22:41261484-41261485|-/AAAACCCCGTCTCTAATAAAAATACAAAAATTAG|frameshift_variant;RANGAP1-PMM1|1|fusion	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	548.263862	1094.51317	-1.1472	-0.00062895	0.84667	0.0004642	-0.30049	-0.00016475	548.2642058008454	92.672	1.2056	90.165	89.806	91.012	-2.5072	0.097391	0.0017036	NaN	176.44	54	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206510			22577	2063	18458	18481							-0.030305811013704442
KEIEEALLRS	10	Unmodified	_KEIEEALLRS_					0	0	0			REV__ENSG00000112232|ENST00000281156|KHDRBS2	REV__ENSG00000112232|ENST00000281156|KHDRBS2	MULTI-MSMS	OvCa99_classI_Rep5	1	594.8372802734375	2	594.335153	1186.65575	0.69797	0.00041483	-1.3674	-0.00081268	-0.66941	-0.00039786	594.3347736933454	74.267	0.62317	74.267	74.095	74.718	0					31	15	3	0	0	0	0.23547	1	7352	7352		89.029	5.3818	1	2447200	+		22578	18086	18459	18482	25031	25031					0.06989051360665144
KEIEEALLRS	10	Unmodified	_KEIEEALLRS_					0	0	0			REV__ENSG00000112232|ENST00000281156|KHDRBS2	REV__ENSG00000112232|ENST00000281156|KHDRBS2	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	594.335153	1186.65575	0.69797	0.00041483	-1.3674	-0.00081268	-0.66941	-0.00039786	594.3347736933454	74.267	0.62317	74.267	74.095	74.718	0	-0.060397	-0.0011741	NaN	89.029	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2447200	+		22579	18086	18459	18482							0.06989051360665144
KEIEEALLRS	10	Unmodified	_KEIEEALLRS_					0	0	0			REV__ENSG00000112232|ENST00000281156|KHDRBS2	REV__ENSG00000112232|ENST00000281156|KHDRBS2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	594.335153	1186.65575	-1.1175	-0.00066416	1.9119	0.0011363	0.79441	0.00047215	594.3350230960763	76.242	0.15799	74.388	74.308	74.466	-1.854	0.060397	0.0027239	NaN	89.029	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8290.8	+		22580	18086	18459	18482							0.06989051360665144
KEIEELTL	8	Unmodified	_KEIEELTL_					0	0	0			REV__tr|A0A7D6ZYY9|A0A7D6ZYY9_9CLOTTerBfamilytelluriteresistanceproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04285PE=4SV=1	REV__tr|A0A7D6ZYY9|A0A7D6ZYY9_9CLOTTerBfamilytelluriteresistanceproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04285PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	487.77508544921875	2	487.773865	973.533177	0.47998	0.00023412	1.9015	0.00092752	2.3815	0.0011616	487.77467246217884	141.15	1.1038	141.15	140.73	141.83	0					60	21	4	0	0	0	0.50747	1	16472	16472		76.774	10.345	1	897800	+		22581	32392	18460	18483	25032	25032					0.04535214629231632
KEIFLRELI	9	Unmodified	_KEIFLRELI_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;HSP90B1|p.I687Vfs*9|1|0.07|ENSG00000166598|chr12:103946648-103946649|-/GTGCTCCAGGTACTTGGGACTC|frameshift_variant;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000506915.1_1_4:190394211-190394298:+|nuORF;ENST00000559111.1_1_15:99797871-99798159:+|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000224411|Q14568|HSP90AA2P;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;HSP90AA1|p.E244Kfs*72|1|0.42|ENSG00000080824|chr14:102084929-102084932|TTTC/-|frameshift_variant	ENSG00000166598|ENST00000299767|HSP90B1;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;HSP90AA1|p.E244Kfs*72|1|0.42|ENSG00000080824|chr14:102084929-102084932|TTTC/-|frameshift_variant	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	OvCa99_classI_Rep5	1	580.8565673828125	2	580.855524	1159.69649	1.3543	0.00078666	0.087139	5.0615E-05	1.4415	0.00083728	580.8554605039196	102.92	1.904	102.92	102.63	104.54	0					164	44	6	0	0	0	0.027568	3	11501	11470;11501;11531		138.06	45.754	1	37049000			22582	6697;1643;1946;13666;14490	18461	18484	25033;25034;25035	25034					0.12303437470950485
KEIFLRELI	9	Unmodified	_KEIFLRELI_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;HSP90B1|p.I687Vfs*9|1|0.07|ENSG00000166598|chr12:103946648-103946649|-/GTGCTCCAGGTACTTGGGACTC|frameshift_variant;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000506915.1_1_4:190394211-190394298:+|nuORF;ENST00000559111.1_1_15:99797871-99798159:+|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000224411|Q14568|HSP90AA2P;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;HSP90AA1|p.E244Kfs*72|1|0.42|ENSG00000080824|chr14:102084929-102084932|TTTC/-|frameshift_variant	ENSG00000166598|ENST00000299767|HSP90B1;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;HSP90AA1|p.E244Kfs*72|1|0.42|ENSG00000080824|chr14:102084929-102084932|TTTC/-|frameshift_variant	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	OvCa9_classI_Rep3	3	580.85693359375	2	580.855524	1159.69649	-0.81503	-0.00047341	0.39777	0.00023105	-0.41726	-0.00024237	580.8555869556707	107.58	2.6118	106.31	105.67	108.28	-1.267					105	36	4	0	0	0	0.033166	4	7632	7632;7638;7643;7650		132.76	34.128	1	338670			22583	6697;1643;1946;13666;14490	18461	18484	25036;25037;25038;25039	25036					0.12303437470950485
KEIFLRELI	9	Unmodified	_KEIFLRELI_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;HSP90B1|p.I687Vfs*9|1|0.07|ENSG00000166598|chr12:103946648-103946649|-/GTGCTCCAGGTACTTGGGACTC|frameshift_variant;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000506915.1_1_4:190394211-190394298:+|nuORF;ENST00000559111.1_1_15:99797871-99798159:+|nuORF;ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;nc|ENSG00000224411|Q14568|HSP90AA2P;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;HSP90AA1|p.E244Kfs*72|1|0.42|ENSG00000080824|chr14:102084929-102084932|TTTC/-|frameshift_variant	ENSG00000166598|ENST00000299767|HSP90B1;ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000556554.1_1_14:102552511-102553379:-|nuORF;HSP90AA1|p.E244Kfs*72|1|0.42|ENSG00000080824|chr14:102084929-102084932|TTTC/-|frameshift_variant	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	OvCa9_classI_Rep4_	4	581.3583374023438	2	580.855524	1159.69649	-2.7377	-0.0015902	2.1377	0.0012417	-0.59998	-0.0003485	580.8565741017269	108.19	2.7355	106.46	105.89	108.63	-1.7256					97	32	4	0	0	0	0.11322	3	9897	9872;9884;9897		93.598	13.853	1	360850			22584	6697;1643;1946;13666;14490	18461	18484	25040;25041;25042	25042					0.12303437470950485
KEIGELTQL	9	Unmodified	_KEIGELTQL_					0	0	0		ENSG00000148484|ENST00000345264|RSU1;ENST00000464074.6_1_10:16769067-16859404:-|nuORF;nc|ENSG00000148484|Q15404-2|RSU1	ENSG00000148484|ENST00000345264|RSU1	ENSG00000148484|ENST00000345264|RSU1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.7938842773438	2	515.792589	1029.57063	2.1711	0.0011198	-0.61776	-0.00031864	1.5533	0.00080118	515.792202045189	84.651	1.4853	84.651	84.345	85.83	0					81	35	4	0	0	0	0.025835	2	8866	8838;8866		140.11	27.701	1	18936000			22585	5415	18462	18485	25043;25044	25044					0.057023058948516336
KEIGELTQL	9	Unmodified	_KEIGELTQL_					0	0	0		ENSG00000148484|ENST00000345264|RSU1;ENST00000464074.6_1_10:16769067-16859404:-|nuORF;nc|ENSG00000148484|Q15404-2|RSU1	ENSG00000148484|ENST00000345264|RSU1	ENSG00000148484|ENST00000345264|RSU1	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7938842773438	2	515.792589	1029.57063	-1.9313	-0.00099614	0.47675	0.0002459	-1.4545	-0.00075024	515.7926460213846	87.606	1.1099	84.979	84.748	85.858	-2.6269					57	21	4	0	0	0	0.084152	1	7450	7450		101.46	10.859	1	530840			22586	5415	18462	18485	25045	25045					0.057023058948516336
KEIGELTQL	9	Unmodified	_KEIGELTQL_					0	0	0		ENSG00000148484|ENST00000345264|RSU1;ENST00000464074.6_1_10:16769067-16859404:-|nuORF;nc|ENSG00000148484|Q15404-2|RSU1	ENSG00000148484|ENST00000345264|RSU1	ENSG00000148484|ENST00000345264|RSU1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.792589	1029.57063	0.13056	6.7342E-05	-0.7033	-0.00036275	-0.57274	-0.00029541	515.792080424914	86.454	1.3382	84.963	84.543	85.881	-1.4906	0.072603	-0.00031786	NaN	140.11	74	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	270270			22587	5415	18462	18485							0.057023058948516336
KEIGELTQL	9	Unmodified	_KEIGELTQL_					0	0	0		ENSG00000148484|ENST00000345264|RSU1;ENST00000464074.6_1_10:16769067-16859404:-|nuORF;nc|ENSG00000148484|Q15404-2|RSU1	ENSG00000148484|ENST00000345264|RSU1	ENSG00000148484|ENST00000345264|RSU1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	515.792589	1029.57063	-0.35112	-0.0001811	0.22447	0.00011578	-0.12665	-6.5324E-05	515.7926588078003	87.146	1.5283	84.969	84.28	85.809	-2.1768	0.078741	0.00063921	NaN	140.11	73	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	564500			22588	5415	18462	18485							0.057023058948516336
KEIHRAIIKF	10	Unmodified	_KEIHRAIIKF_					0	0	0		ENSG00000184698|ENST00000642046|OR51M1	ENSG00000184698|ENST00000642046|OR51M1	ENSG00000184698|ENST00000642046|OR51M1	MULTI-MSMS	OvCa9_classI_Rep3	3	627.8837890625	2	627.88769	1253.76083	-6.0951	-0.003827	2.0591	0.0012929	-4.036	-0.0025342	627.8888127520664	159.21	1.3634	157.94	157.66	159.03	-1.267					65	26	3	0	0	0	0.63752	1	13779	13779		25.574	0	1	154460			22589	8184	18463	18486	25046	25046					0.14409637347716853
KEIIALTKL	9	Unmodified	_KEIIALTKL_					0	0	0			REV__nc|ENSG00000142661|Q5VTT5-3|MYOM3	REV__nc|ENSG00000142661|Q5VTT5-3|MYOM3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.794921875	2	514.839342	1027.66413	-0.98184	-0.00050549	0.17054	8.7799E-05	-0.8113	-0.00041769	514.8392800738737	87.325	1.0036	84.698	84.349	85.353	-2.6269					37	19	3	0	0	0	0.027446	1	7460	7460		60.118	0	1	40125	+		22590	19800	18464	18487	25047	25047					0.15140650067928618
KEIIKPAEEKI	11	Unmodified	_KEIIKPAEEKI_					0	0	0			REV__tr|A0A7D6VRG3|A0A7D6VRG3_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02045PE=4SV=1	REV__tr|A0A7D6VRG3|A0A7D6VRG3_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02045PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	649.3856201171875	2	649.389928	1296.7653	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.32	1	117.32	116.82	117.82	0								0	0	0	0.19469	1	13437	13437		29.551	2.5034	1		+		22591	31414	18465	18488	25048	25048					0.12879056979977577
KEIKTIPDP	9	Unmodified	_KEIKTIPDP_					0	0	0			REV__ENSG00000180182|ENST00000324817|MED14	REV__ENSG00000180182|ENST00000324817|MED14	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.3102416992188	2	520.802957	1039.59136	-1.4024	-0.00073037	3.0034	0.0015642	1.6011	0.00083384	520.803943128705	84.967	0.49363	83.421	83.252	83.745	-1.5462					23	9	4	0	0	0	0.027462	1	7321	7321		32.812	15.447	1	163960	+		22592	22161	18466	18489	25049	25049					0.07314896274510829
KEILQKKPGI	10	Unmodified	_KEILQKKPGI_					0	0	0			REV__tr|A0A553SS26|A0A553SS26_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_02330PE=4SV=1	REV__tr|A0A553SS26|A0A553SS26_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_02330PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	577.3665161132812	2	577.368798	1152.72304	-7.5995	-0.0043877	4.078	0.0023545	-3.5215	-0.0020332	577.3709835310325	161.44	1.2472	160.07	159.69	160.93	-1.3692					76	25	4	0	0	0	0.71192	1	14009	14009		29.15	2.4566	1	379650	+		22593	30793	18467	18490	25050	25050					0.1527912636227029
KEILQKKPGI	10	Unmodified	_KEILQKKPGI_					0	0	0			REV__tr|A0A553SS26|A0A553SS26_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_02330PE=4SV=1	REV__tr|A0A553SS26|A0A553SS26_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_02330PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	577.3663330078125	2	577.368798	1152.72304	-6.9908	-0.0040363	3.1619	0.0018256	-3.8289	-0.0022107	577.3704843168063	161.9	1.6912	160.28	159.86	161.55	-1.6239					125	44	4	0	0	0	0.72319	1	16007	16007		27.882	1.1893	1	1020600	+		22594	30793	18467	18490	25051	25051					0.1527912636227029
KEILRMTE	8	Unmodified	_KEILRMTE_					0	0	0		tr|A0A553SFK8|A0A553SFK8_NIACIGlobaltranscriptionalregulatorSpxOS=NialliacirculansOX=1397GN=spxAPE=3SV=1	tr|A0A553SFK8|A0A553SFK8_NIACIGlobaltranscriptionalregulatorSpxOS=NialliacirculansOX=1397GN=spxAPE=3SV=1	tr|A0A553SFK8|A0A553SFK8_NIACIGlobaltranscriptionalregulatorSpxOS=NialliacirculansOX=1397GN=spxAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	510.28118896484375	2	510.281334	1018.54812	1.5054	0.00076817	-1.6888	-0.00086175	-0.18339	-9.3582E-05	510.28027552379746	62.202	1.7602	59.168	58.656	60.417	-3.0339					84	39	3	0	0	0	0.72731	1	2259	2259		37.812	0.65241	1	77332			22595	33045	18468	18491	25052	25052					0.03958383225585749
KEINEKSNIL	10	Unmodified	_KEINEKSNIL_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000467263.1_1_3:160130128-160131402:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MSMS	OvCa99_classI_Rep5	1	594.3378295898438	2	594.335153	1186.65575	-0.30669	-0.00018228	0.19947	0.00011855	-0.10722	-6.3727E-05	594.3351982346421	50.827	1.0354	50.827	50.509	51.544	0					64	23	5	0	0	0	0.0030581	2	3871	3871;3893		168.26	35.501	1	4265900			22596	2997	18469	18492	25053;25054	25053					0.06989051360665144
KEINEKSSQL	10	Unmodified	_KEINEKSSQL_					0	0	0		ENSG00000067334|ENST00000436063|DNTTIP2	ENSG00000067334|ENST00000436063|DNTTIP2	ENSG00000067334|ENST00000436063|DNTTIP2	MULTI-MSMS	OvCa99_classI_Rep5	1	588.3173828125	2	588.31696	1174.61937	-0.82491	-0.00048531	0.98169	0.00057755	0.15678	9.2235E-05	588.3172866797928	35.025	0.47553	35.025	34.818	35.293	0					34	9	5	0	0	0	0.042975	1	1734	1734		131.62	30.015	1	687930			22597	1374	18470	18493	25055	25055					0.039041744639462195
KEIPKFKT	8	Unmodified	_KEIPKFKT_					0	0	0			REV__tr|A0A553SM88|A0A553SM88_NIACITranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22045PE=4SV=1	REV__tr|A0A553SM88|A0A553SM88_NIACITranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22045PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.8016052246094	2	495.80276	989.590967	2.7675	0.0013721	-3.2389	-0.0016058	-0.47141	-0.00023372	495.8010455800342	130.6	2.8271	129.13	127.57	130.4	-1.4779					94	57	3	0	0	0	0.75661	1	12524	12524		19.36	0	1	84961	+		22598	30306	18471	18494	25056	25056					0.09575521345323068
KEIPRLRIQ	9	Unmodified	_KEIPRLRIQ_					0	0	0		ENST00000576058.2_1_16:13552215-13552527:+|nuORF	ENST00000576058.2_1_16:13552215-13552527:+|nuORF	ENST00000576058.2_1_16:13552215-13552527:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	577.8250122070312	2	576.864215	1151.71388	0.81725	0.00047144	-1.1462	-0.00066121	-0.32895	-0.00018976	576.8633571489098	86.03	0.74724	83.383	83.142	83.889	-2.6463					26	14	3	0	0	0	0.027462	1	7294	7294		51.335	3.6781	1	33877			22599	13946	18472	18495	25057	25057					0.1440877779659786
KEIPRLRIQ	9	Unmodified	_KEIPRLRIQ_					0	0	0		ENST00000576058.2_1_16:13552215-13552527:+|nuORF	ENST00000576058.2_1_16:13552215-13552527:+|nuORF	ENST00000576058.2_1_16:13552215-13552527:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	576.864215	1151.71388	-1.8369	-0.0010596	1.2466	0.00071912	-0.59027	-0.00034051	576.8647776035383	85.731	0.90172	83.511	83.285	84.187	-2.2204	0.063836	0.0012697	NaN	42.396	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55533			22600	13946	18472	18495							0.1440877779659786
KEIPTGKKDH	10	Unmodified	_KEIPTGKKDH_					0	0	0		ENST00000574735.1_1_17:5009121-5012368:-|nuORF;nc|ENSG00000167840|Q9UNY5-2|ZNF232;ENSG00000167840|ENST00000250076|ZNF232	ENST00000574735.1_1_17:5009121-5012368:-|nuORF	ENST00000574735.1_1_17:5009121-5012368:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.7622680664062	2	576.822212	1151.62987	-0.75523	-0.00043563	-0.52019	-0.00030006	-1.2754	-0.00073569	576.8217044063736	61.352	0.38102	61.352	61.245	61.626	0					12	8	2	0	0	0	0.026577	1	5405	5405		58.23	8.6939	1	745010			22601	6842	18473	18496	25058	25058					0.06012201909038595
KEIQELEQLL	10	Unmodified	_KEIQELEQLL_					0	0	0		ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-MSMS	OvCa99_classI_Rep5	1	621.8516845703125	2	621.850635	1241.68672	1.46	0.00090788	1.385	0.00086127	2.845	0.0017691	621.8511033336599	116.68	0.90198	116.68	116.28	117.18	0					38	19	3	0	0	0	0.42082	1	13349	13349		65.465	1.9315	1	758980			22602	3276	18474	18497	25059	25059					0.07554204674897846
KEIREAANAM	10	Unmodified	_KEIREAANAM_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	OvCa99_classI_Rep5	1	566.79296875	2	566.792598	1131.57064	-0.26326	-0.00014921	-0.05088	-2.8838E-05	-0.31414	-0.00017805	566.7925080177488	39.31	0.5714	39.31	39.017	39.589	0					20	12	3	0	0	0	0.32141	1	2303	2303		78.264	14.057	1	598640			22603	1390	18475	18498	25060	25060					0.010119826231857587
KEIRIFLT	8	Unmodified	_KEIRIFLT_					0	0	0			REV__tr|A0A7D7ADP1|A0A7D7ADP1_9CLOTOFAfamilyMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23610PE=4SV=1	REV__tr|A0A7D7ADP1|A0A7D7ADP1_9CLOTOFAfamilyMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23610PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.23760986328125	2	510.316035	1018.61752	1.3933	0.000711	-0.29091	-0.00014845	1.1023	0.00056254	510.315883382861	123.17	0.65446	123.17	122.95	123.61	0					19	13	2	0	0	0	0.028476	1	14209	14209		38.806	5.2906	1	58142	+		22604	32697	18476	18499	25061	25061					0.10895210236640196
KEISDGDMII	10	Unmodified	_KEISDGDMII_					0	0	0		EGFR|p.V461M|1|0.21|ENSG00000146648|chr7:55160221-55160221|G/A|missense_variant	EGFR|p.V461M|1|0.21|ENSG00000146648|chr7:55160221-55160221|G/A|missense_variant	EGFR|p.V461M|1|0.21|ENSG00000146648|chr7:55160221-55160221|G/A|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	560.7848510742188	2	560.781364	1119.54818	2.9229	0.0016391	-3.7557	-0.0021061	-0.83271	-0.00046697	560.7791300217492	84.22	0.87691	84.22	83.965	84.841	0					52	20	4	0	0	0	0.24425	1	8778	8778		87.696	7.7572	1	4940600			22605	783	18477	18500	25062	25062					-0.006816615650677704
KEISNNDKL	9	Unmodified	_KEISNNDKL_					0	0	0		ENSG00000104320|ENST00000265433|NBN	ENSG00000104320|ENST00000265433|NBN	ENSG00000104320|ENST00000265433|NBN	MULTI-MSMS	OvCa99_classI_Rep5	1	530.785400390625	2	530.785296	1059.55604	-0.45886	-0.00024355	0.20492	0.00010877	-0.25394	-0.00013479	530.7852322340057	33.609	0.72893	33.609	33.384	34.113	0					21	13	2	0	0	0	0.28934	1	1556	1556		64.207	3.2353	1	278020			22606	2364	18478	18501	25063	25063					0.02864233746709033
KEISTEEQL	9	Unmodified	_KEISTEEQL_					0	0	0		ENSG00000101966|ENST00000371199|XIAP	ENSG00000101966|ENST00000371199|XIAP	ENSG00000101966|ENST00000371199|XIAP	MULTI-MSMS	OvCa99_classI_Rep5	1	538.779052734375	2	538.777136	1075.53972	-0.28796	-0.00015515	0.52777	0.00028435	0.23981	0.0001292	538.7770263493098	56.078	1.0307	56.078	55.845	56.875	0					49	24	3	0	0	0	0.07097	1	4632	4632		106.68	5.4304	1	1587700			22607	2210	18479	18502	25064	25064					0.004971077899426746
KEITEKTRVAL	11	Unmodified	_KEITEKTRVAL_					0	0	0		ENSG00000100603|ENST00000261531|SNW1;ENST00000557663.1_1_14:78205086-78227470:-|nuORF	ENSG00000100603|ENST00000261531|SNW1	ENSG00000100603|ENST00000261531|SNW1	MULTI-MSMS	OvCa99_classI_Rep5	1	429.92584228515625	3	429.925877	1286.7558	-0.15786	-6.7867E-05	-0.24849	-0.00010683	-0.40635	-0.0001747	429.9258353423133	47.746	0.82743	47.746	47.465	48.292	0					47	18	5	0	0	0	0.054709	1	3456	3456		112.85	19.404	1	2355400			22608	2089	18480	18503	25065	25065					0.12389288694498646
KEIVTEEKI	9	Unmodified	_KEIVTEEKI_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.P12974Lfs*4|1|0.05|ENSG00000155657|chr2:178631204-178631205|-/GTACA|frameshift_variant;TTN|p.E11597Rfs*5|1|0.5|ENSG00000155657|chr2:178651954-178651954|A/-|frameshift_variant;TTN|p.R11195Efs*5|1|0.15|ENSG00000155657|chr2:178674318-178674318|A/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OvCa99_classI_Rep5	1	544.81201171875	2	544.813522	1087.61249	-0.64314	-0.00035039	-2.1429	-0.0011675	-2.786	-0.0015179	544.8122526909484	37.964	0.67929	37.964	37.761	38.44	0					33	14	4	0	0	0	0.13326	1	2117	2117		88.177	5.4265	1	1035200			22609	5793;36288	18481	18504	25066	25066					0.07218861583373837
KEIYNEKELL	10	Unmodified	_KEIYNEKELL_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	OvCa99_classI_Rep5	1	639.8511352539062	2	639.850635	1277.68672	0.29051	0.00018588	-0.28409	-0.00018178	0.0064188	4.107E-06	639.8504001620523	70.975	0.58789	70.975	70.761	71.349	0					41	14	4	0	0	0	6.3833E-06	1	6829	6829		191.45	59.833	1	4406800			22610	2373	18482	18505	25067	25067					0.05898204674917906
KEIYNEKELL	10	Unmodified	_KEIYNEKELL_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	639.850635	1277.68672	-0.14281	-9.1379E-05	-1.5405	-0.00098567	-1.6833	-0.001077	640.3499620003396	74.254	0.14272	71.023	70.952	71.095	-3.2308	0.024127	-0.001555	NaN	191.45	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8442.4			22611	2373	18482	18505							0.05898204674917906
KEKAEKERL	9	Unmodified	_KEKAEKERL_					0	0	0		ENSG00000131504|ENST00000389054|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;nc|ENSG00000131504|O60610-2|DIAPH1	ENSG00000131504|ENST00000389054|DIAPH1	ENSG00000131504|ENST00000389054|DIAPH1	MULTI-MSMS	OvCa99_classI_Rep5	1	565.8299560546875	2	565.830037	1129.64552	0.027635	1.5637E-05	-0.19169	-0.00010846	-0.16405	-9.2826E-05	565.8297426072465	23.277	0.40384	23.277	23.093	23.497	0					17	7	3	0	0	0	0.14855	1	306	306		85.161	21.627	1	167640			22612	4073	18483	18506	25068	25068					0.0858848842608495
KEKAKETAL	9	Unmodified	_KEKAKETAL_					0	0	0		ENST00000503853.1_1_5:176733373-176733568:+|nuORF;nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1;ENST00000567272.1_1_6:126965256-126965442:+|nuORF	ENST00000503853.1_1_5:176733373-176733568:+|nuORF	ENST00000503853.1_1_5:176733373-176733568:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	509.3002014160156	2	509.300581	1016.58661	-0.66362	-0.00033798	0.13779	7.0175E-05	-0.52583	-0.00026781	509.3005432352895	25.869	0.69862	25.869	25.743	26.442	0					31	13	4	0	0	0	0.1149	1	622	622		93.143	21.266	1	948820			22613	6991	18484	18507	25069	25069					0.07898012131749965
KEKAKETAL	9	Unmodified	_KEKAKETAL_					0	0	0		ENST00000503853.1_1_5:176733373-176733568:+|nuORF;nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1;ENST00000567272.1_1_6:126965256-126965442:+|nuORF	ENST00000503853.1_1_5:176733373-176733568:+|nuORF	ENST00000503853.1_1_5:176733373-176733568:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	509.300048828125	2	509.300581	1016.58661	0.73455	0.00037411	-0.98787	-0.00050312	-0.25332	-0.00012902	509.2999535995659	30.076	0.93833	27.366	27.063	28.002	-2.7097					40	18	3	0	0	0	0.42576	1	778	778		49.536	8.7579	1	131680			22614	6991	18484	18507	25070	25070					0.07898012131749965
KEKARRQK	8	Unmodified	_KEKARRQK_					0	0	0			REV__ENST00000487556.5_1_1:43300740-43305721:+|nuORF	REV__ENST00000487556.5_1_1:43300740-43305721:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.2947387695312	2	522.325257	1042.63596	-0.19669	-0.00010274	2.3157	0.0012096	2.119	0.0011068	522.3262376624291	64.591	1.5518	61.105	60.872	62.423	-3.4854					65	31	3	0	0	0	0.028476	1	4683	4683		51.335	0	1	210560	+		22615	20921	18485	18508	25071	25071					0.11634764931227437
KEKDGIGWSRF	11	Unmodified	_KEKDGIGWSRF_					0	0	0			REV__tr|A0A7D6ZKF5|A0A7D6ZKF5_9CLOTTPMdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23390PE=4SV=1	REV__tr|A0A7D6ZKF5|A0A7D6ZKF5_9CLOTTPMdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23390PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	442.2886047363281	3	441.566571	1321.67788	0.16723	7.3842E-05	2.4494	0.0010816	2.6166	0.0011554	441.5675966845177	68.168	1.2866	65.507	65.238	66.524	-2.661					38	25	2	0	0	0	0.025988	1	5333	5333		32.034	0.96598	1	54956	+		22616	32106	18486	18509	25072	25072					0.029912758290720376
KEKDGIGWSRF	11	Unmodified	_KEKDGIGWSRF_					0	0	0			REV__tr|A0A7D6ZKF5|A0A7D6ZKF5_9CLOTTPMdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23390PE=4SV=1	REV__tr|A0A7D6ZKF5|A0A7D6ZKF5_9CLOTTPMdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23390PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		3	441.566571	1321.67788	1.0469	0.00046229	1.2725	0.0005619	2.3194	0.0010242	441.56710597615063	68.488	1.2997	65.673	65.411	66.711	-2.8144	-0.020642	-0.0015942	NaN	20.315	34	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40011	+		22617	32106	18486	18509							0.029912758290720376
KEKDKLIYI	9	Unmodified	_KEKDKLIYI_					0	0	0			REV__tr|A0A7D7ABD8|A0A7D7ABD8_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_14955PE=3SV=1	REV__tr|A0A7D7ABD8|A0A7D7ABD8_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_14955PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	575.348388671875	2	575.347532	1148.68051	0.41999	0.00024164	-2.5594	-0.0014725	-2.1394	-0.0012309	575.345898604362	159.91	1.5859	159.91	159.52	161.11	0					89	31	5	0	0	0	0.68424	1	18800	18800		21.96	0.27414	1	1545400	+		22618	32677	18487	18510	25073	25073					0.11211731234061517
KEKDNIDITL	10	Unmodified	_KEKDNIDITL_					0	0	0		ENSG00000134108|ENST00000256496|ARL8B;ENSG00000143862|ENST00000272217|ARL8A;ENST00000455168.5_1_3:5164021-5220395:+|nuORF	ENSG00000134108|ENST00000256496|ARL8B	ENSG00000134108|ENST00000256496|ARL8B	MULTI-MSMS	OvCa99_classI_Rep5	1	594.8272705078125	2	594.82716	1187.63977	2.6935	0.0016022	-0.7948	-0.00047277	1.8987	0.0011294	594.826576900292	75.58	0.7069	75.58	75.369	76.076	0					42	17	3	0	0	0	0.34811	1	7529	7529		75.043	4.2271	1	2366900			22619	4260	18488	18511	25074	25074					0.05345345123760126
KEKEAENERL	10	Unmodified	_KEKEAENERL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	OvCa99_classI_Rep5	1	623.3195190429688	2	623.325316	1244.63608	-1.1537	-0.00071915	0.96367	0.00060068	-0.19006	-0.00011847	623.3258715822976	27.873	0.79793	27.873	27.691	28.489	0					33	15	4	0	0	0	0.08377	1	860	860		117.71	16.453	1	660420			22620	7740	18489	18512	25075	25075					0.023546753498976614
KEKEFQEEL	9	Unmodified	_KEKEFQEEL_					0	0	0		ENSG00000117724|ENST00000366955|CENPF;CENPF|p.E1182Vfs*21|1|0.46|ENSG00000117724|chr1:214641879-214641882|AGAG/-|frameshift_variant;chr1:214629171-214630534|420|28.84|0.93|4.96|+|0|CENPF,CENPF|1	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-MSMS	OvCa99_classI_Rep5	1	590.3005981445312	2	590.298236	1178.58192	-0.38014	-0.0002244	0.29168	0.00017218	-0.088462	-5.2219E-05	590.29826702317	54.321	0.8047	54.321	54.13	54.935	0					43	18	5	0	0	0	0.055627	1	4384	4384		115.49	0	1	1956200			22621	3276	18490	18513	25076	25076					-0.00022916801663086517
KEKEIKTF	8	Unmodified	_KEKEIKTF_					0	0	0			REV__ENST00000519169.5_1_8:131191508-131249207:-|nuORF	REV__ENST00000519169.5_1_8:131191508-131249207:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	511.7954406738281	2	511.797675	1021.5808	0.077003	3.941E-05	-3.3478	-0.0017134	-3.2708	-0.001674	511.7959765870954	31.339	0.34087	31.339	31.218	31.559	0					18	6	4	0	0	0	0.71267	1	1285	1285		40.778	2.9666	1	129050	+		22622	15667	18491	18514	25077	25077					0.07086913620094037
KEKEKDKI	8	Unmodified	_KEKEKDKI_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	OvCa9_classI_Rep2	2	509.3003845214844	2	509.300581	1016.58661	0.73455	0.00037411	-0.98787	-0.00050312	-0.25332	-0.00012902	509.2999535995659	30.076	0.93833	27.366	27.063	28.002	-2.7097					40	18	3	0	0	0	0.70469	1	796	796		42.396	3.1433	1	131680			22623	7133	18492	18515	25078	25078					0.07898012131749965
KEKELVKKF	9	Unmodified	_KEKELVKKF_					0	0	0			REV__ENSG00000112118|ENST00000596288|MCM3	REV__ENSG00000112118|ENST00000596288|MCM3	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.80419921875	2	574.855524	1147.69649	-0.57684	-0.0003316	-0.56516	-0.00032488	-1.142	-0.00065648	574.8549569850111	80.378	0.45833	78.055	77.827	78.286	-2.3226					12	8	2	0	0	0	0.027462	1	4424	4424		35.618	0	1	12039	+		22624	18075	18493	18516	25079	25079					0.12855437470943798
KEKEPEEEL	9	Unmodified	_KEKEPEEEL_					0	0	0		nc|ENSG00000149781|Q86UX7|FERMT3;ENSG00000149781|ENST00000345728|FERMT3	nc|ENSG00000149781|Q86UX7|FERMT3	nc|ENSG00000149781|Q86UX7|FERMT3	MULTI-MSMS	OvCa99_classI_Rep5	1	565.7822265625	2	565.782418	1129.55028	-0.44168	-0.00024989	-0.36738	-0.00020786	-0.80906	-0.00045775	565.782159478059	39.862	1.5606	39.862	39.589	41.149	0					79	34	4	0	0	0	0.049969	1	2400	2400		118.74	8.6232	1	9131800			22625	15087	18494	18517	25080	25080					-0.009309095556091052
KEKEPEEEL	9	Unmodified	_KEKEPEEEL_					0	0	0		nc|ENSG00000149781|Q86UX7|FERMT3;ENSG00000149781|ENST00000345728|FERMT3	nc|ENSG00000149781|Q86UX7|FERMT3	nc|ENSG00000149781|Q86UX7|FERMT3	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.7835083007812	2	565.782418	1129.55028	-0.12943	-7.3227E-05	0.01829	1.0348E-05	-0.11114	-6.2879E-05	565.7823451062263	45.141	1.3542	42.103	41.816	43.17	-3.0385					72	25	4	0	0	0	0.03923	2	2284	2284;2296		127.46	20.454	1	692730			22626	15087	18494	18517	25081;25082	25081					-0.009309095556091052
KEKEPEEEL	9	Unmodified	_KEKEPEEEL_					0	0	0		nc|ENSG00000149781|Q86UX7|FERMT3;ENSG00000149781|ENST00000345728|FERMT3	nc|ENSG00000149781|Q86UX7|FERMT3	nc|ENSG00000149781|Q86UX7|FERMT3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	565.782418	1129.55028	0.011162	6.3152E-06	-0.46678	-0.0002641	-0.45562	-0.00025778	565.7821239007607	45.007	1.0481	42.297	42	43.048	-2.7097	0.09717	-0.00028993	NaN	127.46	53	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136070			22627	15087	18494	18517							-0.009309095556091052
KEKEQHFH	8	Unmodified	_KEKEQHFH_					0	0	0		tr|A0A553SR12|A0A553SR12_NIACICatalaseOS=NialliacirculansOX=1397GN=CEQ21_00175PE=3SV=1	tr|A0A553SR12|A0A553SR12_NIACICatalaseOS=NialliacirculansOX=1397GN=CEQ21_00175PE=3SV=1	tr|A0A553SR12|A0A553SR12_NIACICatalaseOS=NialliacirculansOX=1397GN=CEQ21_00175PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	542.3182373046875	2	541.772522	1081.53049	0.11148	6.0397E-05	3.1019	0.0016805	3.2134	0.0017409	541.7739306721483	42.98	0.84146	40.27	40.016	40.857	-2.7097					30	16	3	0	0	0	0.028476	1	2356	2356		31.955	0	1	50773			22628	34218	18495	18518	25083	25083					-0.007011959850387939
KEKEYEIERL	10	Unmodified	_KEKEYEIERL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP;DSP|p.R1308Pfs*18|1|0.56|ENSG00000096696|chr6:7580109-7580110|-/C|frameshift_variant;DSP|p.R1725Qfs*9|1|0.06|ENSG00000096696|chr6:7581363-7581364|-/A|frameshift_variant	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OvCa9_classI_Rep2	2	446.2417297363281	3	446.241753	1335.70343	1.5961	0.00071226	-1.633	-0.0007287	-0.036847	-1.6443E-05	446.24100701459264	57.983	1.6668	55.191	54.773	56.44	-2.7921					91	32	5	0	0	0	0.4439	1	4170	4170		62.166	3.9199	1	418310			22629	1949	18496	18519	25084	25084					0.04900705560839924
KEKFEKQLK	9	Unmodified	_KEKFEKQLK_					0	0	0		nc|ENSG00000122483|Q5T9S5|CCDC18;ENSG00000122483|ENST00000690025|CCDC18;nc|ENSG00000122483|Q5T9S5-2|CCDC18;ENST00000421014.2_1_1:93687225-93704878:+|nuORF	nc|ENSG00000122483|Q5T9S5|CCDC18	nc|ENSG00000122483|Q5T9S5|CCDC18	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.8242797851562	2	589.350606	1176.68666	-0.72521	-0.0004274	-2.459	-0.0014492	-3.1843	-0.0018766	589.3489437504093	36.311	0.32317	36.311	36.164	36.487	0					10	6	3	0	0	0	0.027447	1	1886	1886		56.721	0	1	26221			22630	3535	18497	18520	25085	25085					0.10538249465548688
KEKFVMRK	8	Unmodified	_KEKFVMRK_					0	0	0		nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000100485|ENST00000216373|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.7879638671875	2	533.315512	1064.61647	0.13803	7.3615E-05	1.3465	0.00071811	1.4845	0.00079172	533.8154011356412	70.841	0.30836	70.841	70.722	71.031	0					10	7	2	0	0	0	0.028476	1	6812	6812		20.947	0	1	301640			22631	2076	18498	18521	25086	25086					0.08674672596112032
KEKGKISSL	9	Unmodified	_KEKGKISSL_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF;EXOC4-TRUB2|1|fusion	ENSG00000131558|ENST00000253861|EXOC4;EXOC4-TRUB2|1|fusion	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.3028564453125	2	495.303124	988.591695	0.85082	0.00042141	-1.0215	-0.00050596	-0.1707	-8.4549E-05	495.3024741844663	34.424	1.1524	31.636	31.399	32.551	-2.7881					53	22	4	0	0	0	0.16264	1	1016	1016		82.75	20.643	1	179270			22632	4075;14316	18499	18522	25087	25087					0.09694315994374847
KEKGLFIQP	9	Unmodified	_KEKGLFIQP_					0	0	0		ENST00000487133.1_1_X:119739962-119740016:+|nuORF	ENST00000487133.1_1_X:119739962-119740016:+|nuORF	ENST00000487133.1_1_X:119739962-119740016:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.291748046875	2	530.313492	1058.61243	3.0555	0.0016204	-3.9663	-0.0021034	-0.91081	-0.00048301	530.3113199815142	88.094	0.29213	88.094	87.838	88.13	0					11	6	2	0	0	0	0.027462	1	9340	9340		35.618	0	1	104850			22633	12636	18500	18523	25088	25088					0.08546906374044738
KEKGPLVLPSV	11	Unmodified	_KEKGPLVLPSV_					0	0	0			REV__ENST00000413818.2_1_20:45981938-45982076:+|nuORF	REV__ENST00000413818.2_1_20:45981938-45982076:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	583.8588256835938	2	583.860806	1165.70706	-4.259	-0.0024867	1.0102	0.0005898	-3.2489	-0.0018969	583.8612282732444	154.9	1.2136	154.67	154.34	155.56	-0.22696					82	33	4	0	0	0	0.72064	1	15780	15780		22.58	0.61977	1	148650	+		22634	25516	18501	18524	25089	25089					0.1308342012534922
KEKGSTLDL	9	Unmodified	_KEKGSTLDL_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.77679443359375	2	495.776939	989.539325	-0.9208	-0.00045651	0.45412	0.00022514	-0.46667	-0.00023137	495.77701823175414	50.869	1.7239	47.696	47.153	48.877	-3.1734					75	33	4	0	0	0	0.070405	2	2950	2950;2961		107.01	9.5348	1	828810			22635	1958	18502	18525	25090;25091	25090					0.04413732860757591
KEKGSTLDL	9	Unmodified	_KEKGSTLDL_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MATCH	OvCa9_classI_Rep2	2		2	495.776939	989.539325	-1.0157	-0.00050354	0.72965	0.00036174	-0.28602	-0.0001418	495.77715089491693	50.61	1.4359	47.816	47.48	48.916	-2.794	0.060235	8.7771E-05	NaN	107.01	63	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240710			22636	1958	18502	18525							0.04413732860757591
KEKHKESSI	9	Unmodified	_KEKHKESSI_					0	0	0			REV__ZC3H7A|p.G874D|1|0.15|ENSG00000122299|chr16:11752774-11752774|C/T|missense_variant	REV__ZC3H7A|p.G874D|1|0.15|ENSG00000122299|chr16:11752774-11752774|C/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.299560546875	2	543.301113	1084.58767	0.75475	0.00041006	-1.2305	-0.00066855	-0.47578	-0.00025849	543.3004288985807	85.202	0.72968	82.555	82.025	82.755	-2.6463					21	14	2	0	0	0	0.027462	1	7137	7137		37.812	0	1	56821	+		22637	18586	18503	18526	25092	25092					0.048762265006644157
KEKIAEKTE	9	Unmodified	_KEKIAEKTE_					0	0	0			REV__tr|A0A553SPW4|A0A553SPW4_NIACIPBP1Afamilypenicillin-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_11825PE=4SV=1	REV__tr|A0A553SPW4|A0A553SPW4_NIACIPBP1Afamilypenicillin-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_11825PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.783447265625	2	538.303321	1074.59209	-1.41	-0.000759	0.37291	0.00020074	-1.0371	-0.00055826	538.3033231108501	52.882	0.85115	49.674	49.349	50.2	-3.208					27	16	3	0	0	0	0.027462	1	3197	3197		27.882	0	1	59383	+		22638	30579	18504	18527	25093	25093					0.05777690923582668
KEKIASYLE	9	Unmodified	_KEKIASYLE_					0	0	0		tr|A0A7D6VQL3|A0A7D6VQL3_9CLOTYtxHdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15455PE=4SV=1	tr|A0A7D6VQL3|A0A7D6VQL3_9CLOTYtxHdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15455PE=4SV=1	tr|A0A7D6VQL3|A0A7D6VQL3_9CLOTYtxHdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15455PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	540.7952880859375	2	540.800414	1079.58628	-0.59096	-0.00031959	-2.0049	-0.0010843	-2.5959	-0.0014039	540.7992317411336	28.913	0.59853	28.913	28.739	29.337	0					32	11	4	0	0	0	0.63422	1	1001	1001		27.882	1.8189	1	1497500			22639	34857	18505	18528	25094	25094					0.04966592411892634
KEKIDLTSL	9	Unmodified	_KEKIDLTSL_					0	0	0		nc|ENSG00000166750|Q08AF3-2|SLFN5;ENSG00000166750|ENST00000299977|SLFN5	nc|ENSG00000166750|Q08AF3-2|SLFN5	nc|ENSG00000166750|Q08AF3-2|SLFN5	MULTI-MSMS	OvCa99_classI_Rep5	1	523.809326171875	2	523.808239	1045.60193	2.2083	0.0011567	-0.14427	-7.5569E-05	2.064	0.0010812	523.8080833525722	75.388	0.75003	75.388	75.087	75.837	0					56	18	4	0	0	0	0.012051	2	7511	7482;7511		162.25	18.366	1	15362000			22640	6707	18506	18529	25095;25096	25096					0.0809487892895504
KEKIDLTSL	9	Unmodified	_KEKIDLTSL_					0	0	0		nc|ENSG00000166750|Q08AF3-2|SLFN5;ENSG00000166750|ENST00000299977|SLFN5	nc|ENSG00000166750|Q08AF3-2|SLFN5	nc|ENSG00000166750|Q08AF3-2|SLFN5	MULTI-MSMS	OvCa9_classI_Rep2	2	523.8067626953125	2	523.808239	1045.60193	0.25299	0.00013252	-1.1683	-0.00061197	-0.91532	-0.00047945	523.8075093272397	78.636	1.3663	76.896	76.512	77.878	-1.7398					66	26	4	0	0	0	0.070405	3	6586	6581;6586;6593		107.01	10.817	1	375220			22641	6707	18506	18529	25097;25098;25099	25098					0.0809487892895504
KEKIDLTSL	9	Unmodified	_KEKIDLTSL_					0	0	0		nc|ENSG00000166750|Q08AF3-2|SLFN5;ENSG00000166750|ENST00000299977|SLFN5	nc|ENSG00000166750|Q08AF3-2|SLFN5	nc|ENSG00000166750|Q08AF3-2|SLFN5	MULTI-MSMS	OvCa9_classI_Rep3	3	523.8087768554688	2	523.808239	1045.60193	-0.27856	-0.00014591	-0.18187	-9.5267E-05	-0.46044	-0.00024118	523.8080788043233	79.017	1.896	76.677	75.813	77.709	-2.3399					102	37	4	0	0	0	0.03923	3	4245	4245;4250;4263		127.46	8.4052	1	571900			22642	6707	18506	18529	25100;25101;25102	25100					0.0809487892895504
KEKIDLTSL	9	Unmodified	_KEKIDLTSL_					0	0	0		nc|ENSG00000166750|Q08AF3-2|SLFN5;ENSG00000166750|ENST00000299977|SLFN5	nc|ENSG00000166750|Q08AF3-2|SLFN5	nc|ENSG00000166750|Q08AF3-2|SLFN5	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.8092041015625	2	523.808239	1045.60193	-0.91131	-0.00047735	-0.029269	-1.5331E-05	-0.94058	-0.00049268	523.8081209350847	79.647	1.1582	76.896	76.466	77.624	-2.7514					56	23	3	0	0	0	0.029147	1	6465	6465		136.27	26.148	1	536130			22643	6707	18506	18529	25103	25103					0.0809487892895504
KEKIDLTSL	9	Unmodified	_KEKIDLTSL_					0	0	0		nc|ENSG00000166750|Q08AF3-2|SLFN5;ENSG00000166750|ENST00000299977|SLFN5	nc|ENSG00000166750|Q08AF3-2|SLFN5	nc|ENSG00000166750|Q08AF3-2|SLFN5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	523.808239	1045.60193	-1.2018	-0.00062949	6.682	0.0035001	5.4802	0.0028706	523.8111513263286	77.373	0.31366	75.02	74.786	75.1	-2.3527	-0.18394	0.0069478	NaN	162.25	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5296.8			22644	6707	18506	18529							0.0809487892895504
KEKIGVFIE	9	Unmodified	_KEKIGVFIE_					0	0	0		tr|A0A7D6W2Z1|A0A7D6W2Z1_9CLOTNUDIXdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08170PE=4SV=1	tr|A0A7D6W2Z1|A0A7D6W2Z1_9CLOTNUDIXdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08170PE=4SV=1	tr|A0A7D6W2Z1|A0A7D6W2Z1_9CLOTNUDIXdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08170PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	531.8153076171875	2	531.813325	1061.6121	0.78495	0.00041744	0.84601	0.00044992	1.631	0.00086736	531.8139003524317	141.67	1.3473	141.67	141.44	142.78	0					58	26	4	0	0	0	0.46356	1	16608	16608		45.972	3.4978	1	329330			22645	35444	18507	18530	25104	25104					0.08375486654199449
KEKIIFVQ	8	Unmodified	_KEKIIFVQ_					0	0	0			REV__tr|A0A7D6VRG8|A0A7D6VRG8_9CLOTFRGdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06920PE=4SV=1	REV__tr|A0A7D6VRG8|A0A7D6VRG8_9CLOTFRGdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06920PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	502.811767578125	2	502.810585	1003.60662	1.4794	0.00074384	0.21606	0.00010864	1.6954	0.00085248	502.8106123813071	113.83	1.7268	113.83	113.57	115.3	0					94	37	5	0	0	0	0.22496	1	12986	12986		120.62	10.501	1	9923900	+		22646	31417	18508	18531	25105	25105					0.10495807862389483
KEKIIFVQ	8	Unmodified	_KEKIIFVQ_					0	0	0			REV__tr|A0A7D6VRG8|A0A7D6VRG8_9CLOTFRGdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06920PE=4SV=1	REV__tr|A0A7D6VRG8|A0A7D6VRG8_9CLOTFRGdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06920PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	502.810585	1003.60662	-0.22292	-0.00011209	-5.7581	-0.0028952	-5.981	-0.0030073	502.809565473157	113.76	0.44481	113.65	113.47	113.91	-0.11777	-0.11277	-0.0059127	NaN	120.62	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24902	+		22647	31417	18508	18531							0.10495807862389483
KEKIIFVQ	8	Unmodified	_KEKIIFVQ_					0	0	0			REV__tr|A0A7D6VRG8|A0A7D6VRG8_9CLOTFRGdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06920PE=4SV=1	REV__tr|A0A7D6VRG8|A0A7D6VRG8_9CLOTFRGdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06920PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	502.810585	1003.60662	-0.074988	-3.7705E-05	-0.17778	-8.9389E-05	-0.25277	-0.00012709	502.8100801046636	115.2	0.30126	113.8	113.62	113.92	-1.3977	0.045666	-0.00030097	NaN	120.62	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21911	+		22648	31417	18508	18531							0.10495807862389483
KEKIPPPL	8	Unmodified	_KEKIPPPL_					0	0	0		ENST00000430375.1_1_3:190946511-190947557:-|nuORF	ENST00000430375.1_1_3:190946511-190947557:-|nuORF	ENST00000430375.1_1_3:190946511-190947557:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	462.2874450683594	2	461.292028	920.569503	-1.2036	-0.00055523	0.20111	9.2772E-05	-1.0025	-0.00046245	461.2917607504553	85.581	0.64288	84.09	83.9	84.543	-1.4906					19	12	2	0	0	0	0.028476	1	7410	7410		37.159	0	1	8428.1			22649	11787	18509	18532	25106	25106					0.10604136316624135
KEKKEEQVI	9	Unmodified	_KEKKEEQVI_					0	0	0		ENST00000519690.1_1_5:149827146-149827347:-|nuORF;RPS14|p.S70Cfs*31|1|0.39|ENSG00000164587|chr5:150446894-150446904|AGCATATGGTG/-|frameshift_variant;ENSG00000164587|ENST00000407193|RPS14	ENST00000519690.1_1_5:149827146-149827347:-|nuORF	ENST00000519690.1_1_5:149827146-149827347:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	565.8240356445312	2	565.824421	1129.63429	-1.6624	-0.00094061	1.3407	0.00075858	-0.32171	-0.00018203	565.8250621645125	34.497	1.3866	31.787	31.513	32.9	-2.7097					82	27	4	0	0	0	0.045281	4	1330	1312;1318;1330;1348		122.18	6.6819	1	859200			22650	6468	18510	18533	25107;25108;25109;25110	25109					0.0746566633195016
KEKKEIAL	8	Unmodified	_KEKKEIAL_					0	0	0		tr|A0A7D6ZI17|A0A7D6ZI17_9CLOTDNAtopoisomerase(ATP-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=HZF06_05265PE=4SV=1	tr|A0A7D6ZI17|A0A7D6ZI17_9CLOTDNAtopoisomerase(ATP-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=HZF06_05265PE=4SV=1	tr|A0A7D6ZI17|A0A7D6ZI17_9CLOTDNAtopoisomerase(ATP-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=HZF06_05265PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.76824951171875	2	479.800217	957.585882	-0.85907	-0.00041218	0.6297	0.00030213	-0.22937	-0.00011005	479.8003463502887	54.098	1.0763	50.85	50.466	51.542	-3.2474					39	20	3	0	0	0	0.028476	1	3392	3392		40.778	0	1	123800			22651	35600	18511	18534	25111	25111					0.1053921748269886
KEKKINRR	8	Unmodified	_KEKKINRR_					0	0	0		ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	ENSG00000184661|ENST00000330560|CDCA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.235595703125	2	536.340907	1070.66726	-0.098126	-5.2629E-05	1.5897	0.00085264	1.4916	0.00080001	536.3415683540653	47.238	0.96428	47.238	46.587	47.551	0					36	21	2	0	0	0	0.028476	1	3341	3341		24.203	5.8783	1	96718			22652	8180	18512	18535	25112	25112					0.13475337965292056
KEKKKDRDK	9	Unmodified	_KEKKKDRDK_					0	0	0		nc|ENSG00000148498|Q8TEW0-9|PARD3;nc|ENSG00000148498|Q8TEW0-10|PARD3;nc|ENSG00000148498|Q8TEW0-8|PARD3;nc|ENSG00000148498|Q8TEW0-7|PARD3;nc|ENSG00000148498|Q8TEW0-6|PARD3;nc|ENSG00000148498|Q8TEW0-4|PARD3;nc|ENSG00000148498|Q8TEW0-11|PARD3;ENSG00000148498|ENST00000374788|PARD3;nc|ENSG00000148498|Q8TEW0|PARD3;nc|ENSG00000148498|Q8TEW0-5|PARD3;nc|ENSG00000148498|Q8TEW0-3|PARD3	nc|ENSG00000148498|Q8TEW0-9|PARD3	nc|ENSG00000148498|Q8TEW0-9|PARD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.3096923828125	2	587.848761	1173.68297	1.2033	0.00070738	3.6697	0.0021572	4.873	0.0028646	587.8510713913934	81.616	0.60692	81.616	81.372	81.979	0					23	14	2	0	0	0	0.027462	1	8453	8453		29.15	7.4638	1	497400			22653	5416	18513	18536	25113	25113					0.10307579691698265
KEKKLNQQKWR	11	Unmodified	_KEKKLNQQKWR_					0	0	0			REV__ENSG00000127831|ENST00000248444|VIL1	REV__ENSG00000127831|ENST00000248444|VIL1	MSMS	OvCa9_classI_Rep2	2	495.9576416015625	3	495.959803	1484.85758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	160.03	1	159.8	159.3	160.3	-0.22696								0	0	0	0.19474	1	16274	16274		8.7993	2.7983	1		+		22654	18827	18514	18537	25114	25114					0.13454579836866287
KEKKTKKKP	9	Unmodified	_KEKKTKKKP_					0	0	0			REV__ENSG00000117877|ENST00000309424|POLR1G	REV__ENSG00000117877|ENST00000309424|POLR1G	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.8278198242188	2	557.868966	1113.72338	-0.25835	-0.00014412	3.5657	0.0019892	3.3074	0.0018451	557.8707643591645	68.212	0.73769	68.212	67.996	68.733	0					43	17	3	0	0	0	0.027462	1	6425	6425		35.618	0	1	1400100	+		22655	18373	18515	18538	25115	25115					0.17106546082118257
KEKKWQLE	8	Unmodified	_KEKKWQLE_					0	0	0		Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|8|1|sense;Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|54|2|sense;Harlequin-int_dup161|chr4:91353598-91357139:-|1.3911466287095282|0.2716421829311496|2.36|422.0|50|2|sense;Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|14|1|sense	Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|8|1|sense	Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|8|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8291015625	2	544.808574	1087.60259	-0.1049	-5.7148E-05	3.0993	0.0016885	2.9944	0.0016314	544.8101056889594	33.112	0.63907	33.112	32.844	33.483	0					23	12	3	0	0	0	0.028476	1	1498	1498		66.429	0	1	234620			22656	14369	18516	18539	25116	25116					0.062297183686723656
KEKKWQLE	8	Unmodified	_KEKKWQLE_					0	0	0		Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|8|1|sense;Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|54|2|sense;Harlequin-int_dup161|chr4:91353598-91357139:-|1.3911466287095282|0.2716421829311496|2.36|422.0|50|2|sense;Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|14|1|sense	Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|8|1|sense	Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|8|1|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	544.3028564453125	2	544.808574	1087.60259	-0.37112	-0.00020219	-1.0626	-0.00057893	-1.4337	-0.00078112	544.8076793315723	78.589	2.5947	76.237	75.253	77.848	-2.3527					128	51	4	0	0	0	0.32444	1	4160	4160		102.77	4.144	1	2782000			22657	14369	18516	18539	25117	25117					0.062297183686723656
KEKLAPLS	8	Unmodified	_KEKLAPLS_					0	0	0		tr|A0A553SSD9|A0A553SSD9_NIACINitroreductasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_02780PE=3SV=1	tr|A0A553SSD9|A0A553SSD9_NIACINitroreductasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_02780PE=3SV=1	tr|A0A553SSD9|A0A553SSD9_NIACINitroreductasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_02780PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	443.27252197265625	2	443.273835	884.533118	-1.4905	-0.00066069	-1.4677	-0.00065059	-2.9582	-0.0013113	443.2730906196648	139.11	1.2789	138.05	137.68	138.96	-1.0595					59	25	3	0	0	0	0.75241	1	11408	11408		25.45	4.9683	1	174030			22658	34363	18517	18540	25118	25118					0.08623259419891838
KEKLKAENQ	9	Unmodified	_KEKLKAENQ_					0	0	0			REV__nc|ENSG00000013374|Q9Y5A7-2|NUB1	REV__nc|ENSG00000013374|Q9Y5A7-2|NUB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8294067382812	2	544.308938	1086.60332	-0.45264	-0.00024637	-0.3498	-0.0001904	-0.80243	-0.00043677	544.3097939668639	33.558	0.24792	33.558	33.384	33.632	0					8	4	3	0	0	0	0.027459	1	1541	1541		62.107	29.295	1	15642	+		22659	16506	18518	18541	25119	25119					0.06348513017701407
KEKLQIVEM	9	Oxidation (M)	_KEKLQIVEM(Oxidation (M))_		KEKLQIVEM(1)		KEKLQIVEM(77)	0	0	1		ENSG00000149257|ENST00000358171|SERPINH1;ENST00000419794.1_1_9:34318953-34319253:+|nuORF	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3154907226562	2	567.315374	1132.6162	2.0704	0.0011746	-2.1966	-0.0012462	-0.12617	-7.1576E-05	567.3139739099872	57.536	1.95	54.41	53.788	55.738	-3.1264					89	52	3	0	0	0	0.1944	1	1712	1712		77.318	13.784	1	66904			22660	5448	18519	18542	25120	25120		179			0.055192080855931636
KEKLQIVEM	9	Oxidation (M)	_KEKLQIVEM(Oxidation (M))_		KEKLQIVEM(1)		KEKLQIVEM(110)	0	0	1		ENSG00000149257|ENST00000358171|SERPINH1;ENST00000419794.1_1_9:34318953-34319253:+|nuORF	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3167114257812	2	567.315374	1132.6162	0.66541	0.0003775	-0.77564	-0.00044003	-0.11024	-6.2539E-05	567.3147877702045	57.657	1.3127	54.312	53.934	55.247	-3.3449					58	25	3	0	0	0	0.066102	2	3747	3747;3758		109.48	29.766	1	364200			22661	5448	18519	18542	25121;25122	25121		179			0.055192080855931636
KEKLQIVEM	9	Oxidation (M)	_KEKLQIVEM(Oxidation (M))_					0	0	1		ENSG00000149257|ENST00000358171|SERPINH1;ENST00000419794.1_1_9:34318953-34319253:+|nuORF	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	567.315374	1132.6162	-0.90928	-0.00051585	0.77263	0.00043832	-0.13665	-7.7521E-05	567.3156629669743	56.96	1.5895	54.167	53.683	55.273	-2.7921	-0.12913	0.0024617	NaN	109.48	64	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95927			22662	5448	18519	18542				179			0.055192080855931636
KEKLWDTDK	9	Unmodified	_KEKLWDTDK_					0	0	0			REV__ENST00000582147.1_1_18:334691-500598:-|nuORF	REV__ENST00000582147.1_1_18:334691-500598:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	580.8388061523438	2	581.808771	1161.60299	0.78381	0.00045603	-0.73862	-0.00042974	0.045187	2.629E-05	581.8090631227772	91.422	0.68668	90.186	90.007	90.694	-1.2355					20	12	2	0	0	0	0.027426	1	8154	8154		56.721	1.9447	1	29033	+		22663	20561	18520	18543	25123	25123					0.028650932978280252
KEKMHTNLL	9	Unmodified	_KEKMHTNLL_					0	0	0		CON__Q2KIG3	CON__Q2KIG3	CON__Q2KIG3	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.31103515625	2	557.307884	1112.60121	1.2338	0.00068758	2.8133	0.0015679	4.047	0.0022554	557.3092024048326	113.86	1.9693	112.41	112.1	114.07	-1.4461					97	38	4	0	0	0	0.3249	1	10589	10589		60.118	0	1	517780		+	22664	640	18521	18544	25124	25124					0.049417610082628016
KEKNVRKLN	9	Unmodified	_KEKNVRKLN_					0	0	0			REV__ENSG00000188994|ENST00000369577|ZNF292	REV__ENSG00000188994|ENST00000369577|ZNF292	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.7835083007812	2	564.846022	1127.67749	0.051758	2.9235E-05	0.65056	0.00036747	0.70232	0.0003967	564.846571934247	45.096	1.0837	42.058	41.564	42.647	-3.0385					27	20	2	0	0	0	0.027462	1	2296	2296		32.812	9.7699	1	30316	+		22665	22753	18522	18545	25125	25125					0.11875900899917724
KEKPEEESL	9	Unmodified	_KEKPEEESL_					0	0	0		nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	MULTI-MSMS	OvCa99_classI_Rep5	1	544.7767944335938	2	544.777136	1087.53972	-1.0847	-0.00059094	0.42653	0.00023237	-0.6582	-0.00035857	544.7773468562556	34.375	0.84351	34.375	34.161	35.004	0					27	17	3	0	0	0	0.010478	1	1644	1644		167.23	9.1542	1	1986600			22666	5408	18523	18546	25126	25126					-0.0005489221005063882
KEKPKKEE	8	Unmodified	_KEKPKKEE_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4;REV__nc|ENSG00000196159|Q6V0I7-2|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.2436218261719	2	508.292756	1014.57096	-0.087859	-4.4658E-05	-3.2467	-0.0016503	-3.3345	-0.0016949	508.29108189087583	30.443	0.496	30.443	30.285	30.781	0					13	9	2	0	0	0	0.028476	1	1152	1152		74.255	24.813	1	48312	+		22667	22791;29073	18524	18547	25127	25127					0.06425725614712974
KEKPLGPKEQI	11	Unmodified	_KEKPLGPKEQI_					0	0	0		ENAM|p.E968Afs*96|1|0.07|ENSG00000132464|chr4:70644328-70644329|-/CC|frameshift_variant;ENSG00000132464|ENST00000396073|ENAM	ENAM|p.E968Afs*96|1|0.07|ENSG00000132464|chr4:70644328-70644329|-/CC|frameshift_variant	ENAM|p.E968Afs*96|1|0.07|ENSG00000132464|chr4:70644328-70644329|-/CC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	422.9190979003906	3	422.918722	1265.73434	-0.42407	-0.00017935	1.0922	0.0004619	0.6681	0.00028255	422.9191804294928	74.511	2.5984	72.54	72.114	74.713	-1.9711					157	49	5	0	0	0	0.57194	1	6138	6138		47.228	4.3634	1	1026300			22668	795	18525	18548	25128	25128					0.11209903665758247
KEKPLRSSR	9	Unmodified	_KEKPLRSSR_					0	0	0		ENSG00000215421|ENST00000299687|ZNF407;ENST00000579200.1_1_18:72775002-72776421:+|nuORF	ENSG00000215421|ENST00000299687|ZNF407;ENST00000579200.1_1_18:72775002-72776421:+|nuORF	ENSG00000215421|ENST00000299687|ZNF407	MULTI-MSMS	OvCa9_classI_Rep2	2	550.829833984375	2	550.830372	1099.64619	-1.0356	-0.00057041	0.70662	0.00038923	-0.32893	-0.00018119	550.8306545047046	34.381	0.8918	31.671	31.415	32.306	-2.7097					29	17	2	0	0	0	0.65371	1	1314	1314		25.574	4.6271	1	88854			22669	9206;13977	18526	18549	25129	25129					0.1003532786580763
KEKPRMNNI	9	Unmodified	_KEKPRMNNI_					0	0	0		nc|ENSG00000188803|Q6ZSJ9-2|SHISA6	nc|ENSG00000188803|Q6ZSJ9-2|SHISA6	nc|ENSG00000188803|Q6ZSJ9-2|SHISA6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	566.2810668945312	2	565.310958	1128.60736	1.9419	0.0010978	-0.73397	-0.00041492	1.208	0.00068288	565.3120525919019	67.37	0.3976	63.88	63.64	64.037	-3.4902					11	7	2	0	0	0	0.027448	1	4958	4958		44.117	6.3053	1	18698			22670	15232	18527	18550	25130	25130					0.048202792397887606
KEKQEEELL	9	Unmodified	_KEKQEEELL_					0	0	0		nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7;nc|ENSG00000083223|Q5VYS8-3|TUT7;ENST00000277141.10_2_9:88941382-88968129:-|nuORF;nc|ENSG00000083223|Q5VYS8-2|TUT7;nc|ENSG00000083223|Q5VYS8-5|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	MULTI-MSMS	OvCa99_classI_Rep5	1	573.306884765625	2	573.306061	1144.59757	-0.46549	-0.00026687	0.16804	9.6338E-05	-0.29745	-0.00017053	573.3060915024663	47.696	0.56338	47.696	47.465	48.028	0					29	12	4	0	0	0	0.075543	1	3446	3446		104.06	16.36	1	1689400			22671	1689	18528	18551	25131	25131					0.031053697153765825
KEKQEEELL	9	Unmodified	_KEKQEEELL_					0	0	0		nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7;nc|ENSG00000083223|Q5VYS8-3|TUT7;ENST00000277141.10_2_9:88941382-88968129:-|nuORF;nc|ENSG00000083223|Q5VYS8-2|TUT7;nc|ENSG00000083223|Q5VYS8-5|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	MULTI-MATCH	OvCa9_classI_Rep2	2		2	573.306061	1144.59757	-2.1335	-0.0012231	-5.8418	-0.0033491	-7.9753	-0.0045723	573.3028319751166	50.829	0.64311	48.035	47.729	48.372	-2.794	0.15227	-0.0056641	NaN	104.06	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50060			22672	1689	18528	18551							0.031053697153765825
KEKQEEELL	9	Unmodified	_KEKQEEELL_					0	0	0		nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7;nc|ENSG00000083223|Q5VYS8-3|TUT7;ENST00000277141.10_2_9:88941382-88968129:-|nuORF;nc|ENSG00000083223|Q5VYS8-2|TUT7;nc|ENSG00000083223|Q5VYS8-5|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	573.306061	1144.59757	-1.0805	-0.00061945	-6.8954	-0.0039532	-7.9759	-0.0045726	573.302092202153	51.09	1.1602	47.916	47.464	48.624	-3.1734	0.033872	-0.0068722	NaN	104.06	34	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233420			22673	1689	18528	18551							0.031053697153765825
KEKRKRQRQEE	11	Unmodified	_KEKRKRQRQEE_					0	0	0		ENST00000505524.1_1_5:36108630-36114563:-|nuORF;ENSG00000164187|ENST00000296603|LMBRD2	ENST00000505524.1_1_5:36108630-36114563:-|nuORF	ENST00000505524.1_1_5:36108630-36114563:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.2533264160156	3	505.62185	1513.84372	-1.3698	-0.0006926	-1.8237	-0.00092209	-3.1935	-0.0016147	505.9549496284045	55.355	0.50786	52.061	51.803	52.311	-3.2944					12	9	2	0	0	0	0.026058	1	3473	3473		30.139	16.053	1	13098			22674	6430	18529	18552	25132	25132					0.10735302337798203
KEKRLALL	8	Unmodified	_KEKRLALL_					0	0	0			REV__ENST00000375887.8_1_13:108922181-108922310:+|nuORF	REV__ENST00000375887.8_1_13:108922181-108922310:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	485.8253173828125	2	485.824027	969.633501	-0.50077	-0.00024329	-0.066905	-3.2504E-05	-0.56768	-0.00027579	485.8238988812661	67.776	0.86691	67.776	67.489	68.356	0					64	21	5	0	0	0	0.57878	1	6356	6356		68.485	5.1784	1	2582300	+		22675	25094	18530	18553	25133	25133					0.14746916473552574
KEKRNGLGK	9	Unmodified	_KEKRNGLGK_					0	0	0		tr|A0A7D6VY33|A0A7D6VY33_9CLOTTrypsin-likepeptidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19755PE=3SV=1	tr|A0A7D6VY33|A0A7D6VY33_9CLOTTrypsin-likepeptidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19755PE=3SV=1	tr|A0A7D6VY33|A0A7D6VY33_9CLOTTrypsin-likepeptidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19755PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	515.3111572265625	2	515.311815	1028.60908	-2.0827	-0.0010732	1.7149	0.00088368	-0.36786	-0.00018956	515.312623228854	35.485	1.3896	32.775	32.503	33.893	-2.7097					66	27	3	0	0	0	0.51865	1	1456	1456		40.778	4.3314	1	694720			22676	35314	18531	18554	25134	25134					0.09591656320048969
KEKVEPEVL	9	Unmodified	_KEKVEPEVL_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-MSMS	OvCa99_classI_Rep5	1	535.8097534179688	2	535.808239	1069.60193	-0.44248	-0.00023708	-0.87261	-0.00046755	-1.3151	-0.00070463	535.8075866419802	53.778	1.071	53.778	53.519	54.59	0					58	25	4	0	0	0	0.055627	2	4315	4284;4315		115.49	16.865	1	5212500			22677	1495	18532	18555	25135;25136	25136					0.06990878928968414
KEKVNGTLGDI	11	Unmodified	_KEKVNGTLGDI_					0	0	0			REV__nc|ENSG00000154678|Q14123-3|PDE1C	REV__nc|ENSG00000154678|Q14123-3|PDE1C	MULTI-SECPEP	OvCa9_classI_Rep4_	4	587.8438110351562	2	587.327328	1172.6401	-0.87639	-0.00051473	1.4652	0.00086057	0.58883	0.00034584	587.3281304503244	46.409	0.92916	43.337	43.136	44.065	-3.0724					25	17	2	0	0	0	0.025457	1	2507	2507		36.447	11.928	1	51074	+		22678	28938	18533	18556	25137	25137					0.06068764843644203
KEKVSEKL	8	Unmodified	_KEKVSEKL_					0	0	0			REV__nc|ENSG00000039560|Q9P0K7-4|RAI14	REV__nc|ENSG00000039560|Q9P0K7-4|RAI14	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.75445556640625	2	480.78985	959.565146	-0.78345	-0.00037667	0.31368	0.00015082	-0.46977	-0.00022586	480.78989757136236	49.762	0.78368	49.762	49.593	50.376	0					27	17	3	0	0	0	0.028476	1	3736	3736		51.193	8.3284	1	534650	+		22679	16624	18534	18557	25138	25138					0.0837462710304635
KEKVSLLLD	9	Unmodified	_KEKVSLLLD_					0	0	0			REV__HERVH-int_dup395|chr1:229174781-229177850:+|1.6476935486843904|0.2234293350488721|2.88|410.0|132|2|anti-sense	REV__HERVH-int_dup395|chr1:229174781-229177850:+|1.6476935486843904|0.2234293350488721|2.88|410.0|132|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.8058471679688	2	522.818607	1043.62266	-1.0875	-0.00056859	2.0434	0.0010683	0.95583	0.00049973	522.8193514145574	61.563	0.41076	61.563	61.332	61.743	0					23	9	3	0	0	0	0.027426	1	5432	5432		66.429	5.4573	1	679190	+		22680	28233	18535	18558	25139	25139					0.10259469308630287
KEKVSTQNL	9	Unmodified	_KEKVSTQNL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.7950439453125	2	523.795663	1045.57677	-0.90941	-0.00047634	0.39018	0.00020437	-0.51923	-0.00027197	523.795823719714	39.941	1.4356	36.987	36.665	38.101	-2.9541					63	27	4	0	0	0	0.1243	1	1689	1689		90.601	5.44	1	430070			22681	2048	18536	18559	25140	25140					0.055808241263775926
KEKVSTQNL	9	Unmodified	_KEKVSTQNL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	523.795663	1045.57677	-0.32643	-0.00017098	0.05713	2.9924E-05	-0.2693	-0.00014106	523.7955769788687	39.691	0.74625	36.981	36.805	37.551	-2.7097	-0.0029358	-0.00024049	NaN	90.601	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78417			22682	2048	18536	18559							0.055808241263775926
KEKYIDQEEL	10	Unmodified	_KEKYIDQEEL_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000507090.2_1_4:13338641-13339112:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000205940|Q58FF8|HSP90AB2P	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OvCa99_classI_Rep5	1	647.83056640625	2	647.8299	1293.64525	-0.52436	-0.0003397	-0.42456	-0.00027504	-0.94893	-0.00061474	647.8296249015873	59.572	2.2773	59.572	59.265	61.542	0					156	55	5	0	0	0	0.022812	3	5123	5123;5152;5184		148.69	46.879	1	94823000			22683	1643;1946	18537	18560	25141;25142;25143	25141					0.010170239155968375
KEKYIDQEEL	10	Unmodified	_KEKYIDQEEL_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000507090.2_1_4:13338641-13339112:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000205940|Q58FF8|HSP90AB2P	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OvCa9_classI_Rep2	2	647.8286743164062	2	647.8299	1293.64525	-2.6526	-0.0017184	2.6173	0.0016955	-0.035304	-2.2871E-05	647.8315706384766	63.145	2.1564	60.4	59.847	62.003	-2.7444					135	40	5	0	0	0	0.0020415	8	4773	4746;4751;4757;4762;4767;4773;4780;4786		160.82	39.251	1	1548300			22684	1643;1946	18537	18560	25144;25145;25146;25147;25148;25149;25150;25151	25149					0.010170239155968375
KEKYIDQEEL	10	Unmodified	_KEKYIDQEEL_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000507090.2_1_4:13338641-13339112:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000205940|Q58FF8|HSP90AB2P	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	647.831298828125	2	647.8299	1293.64525	0.4243	0.00027487	-1.302	-0.0008435	-0.87775	-0.00056863	647.8290940591735	63.934	2.7116	60.459	59.964	62.675	-3.475					159	55	5	0	0	0	0.0111	7	4531	4509;4519;4531;4543;4555;4567;4582		160.82	43.011	1	6065000			22685	1643;1946	18537	18560	25152;25153;25154;25155;25156;25157;25158	25154					0.010170239155968375
KEKYIDQEEL	10	Unmodified	_KEKYIDQEEL_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;nc|ENSG00000224411|Q14568|HSP90AA2P;ENST00000507090.2_1_4:13338641-13339112:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000205940|Q58FF8|HSP90AB2P	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	647.8299	1293.64525	1.2641	0.00081891	-1.0095	-0.00065397	0.2546	0.00016494	647.8291793936139	63.485	0.98726	60.452	60.113	61.1	-3.0339	0.014473	-0.0034371	NaN	160.82	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18712			22686	1643;1946	18537	18560							0.010170239155968375
KELASALKSAL	11	Unmodified	_KELASALKSAL_					0	0	0		nc|ENSG00000231991|A6NMY6|ANXA2P2;ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2	nc|ENSG00000231991|A6NMY6|ANXA2P2	nc|ENSG00000231991|A6NMY6|ANXA2P2	MULTI-MSMS	OvCa99_classI_Rep5	1	565.8430786132812	2	565.842613	1129.67067	2.778	0.0015719	-0.80496	-0.00045548	1.973	0.0011164	565.8420015674496	75.88	1.2438	75.88	75.639	76.882	0					58	30	4	0	0	0	0.4744	1	7572	7572		55.721	2.6321	1	4020000			22687	8019	18538	18561	25159	25159					0.11102543228662398
KELDIEGL	8	Unmodified	_KELDIEGL_					0	0	0			REV__ENSG00000175324|ENST00000311351|LSM1;REV__tr|A0A7D6VP67|A0A7D6VP67_9CLOTDNA-directedRNApolymerasesubunitbeta'OS=ClostridiumintestinaleOX=36845GN=rpoCPE=3SV=1	REV__tr|A0A7D6VP67|A0A7D6VP67_9CLOTDNA-directedRNApolymerasesubunitbeta'OS=ClostridiumintestinaleOX=36845GN=rpoCPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	457.7569274902344	2	458.752933	915.491313	-2.3619	-0.0010835	3.2866	0.0015077	0.92463	0.00042418	458.7542708567583	49.495	0.82725	46.354	46.095	46.922	-3.1416					31	15	3	0	0	0	0.028476	1	2853	2853		33.516	0	1	118890	+		22688	31232;21892	18539	18562	25160	25160					0.030186589407207975
KELDIEGL	8	Unmodified	_KELDIEGL_					0	0	0			REV__ENSG00000175324|ENST00000311351|LSM1;REV__tr|A0A7D6VP67|A0A7D6VP67_9CLOTDNA-directedRNApolymerasesubunitbeta'OS=ClostridiumintestinaleOX=36845GN=rpoCPE=3SV=1	REV__tr|A0A7D6VP67|A0A7D6VP67_9CLOTDNA-directedRNApolymerasesubunitbeta'OS=ClostridiumintestinaleOX=36845GN=rpoCPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	458.752933	915.491313	-0.31732	-0.00014557	2.3332	0.0010704	2.0159	0.00092479	458.75384588043136	49.146	1.0386	46.386	45.929	46.967	-2.7603	0.016147	-0.00035045	NaN	33.516	34	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56319	+		22689	31232;21892	18539	18562							0.030186589407207975
KELDQQSAQL	10	Unmodified	_KELDQQSAQL_					0	0	0			REV__ENSG00000110841|ENST00000228425|PPFIBP1	REV__ENSG00000110841|ENST00000228425|PPFIBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	580.3024291992188	2	580.30131	1158.58807	-0.6528	-0.00037882	0.31148	0.00018075	-0.34132	-0.00019807	580.3014059997729	53.096	0.38715	53.096	52.873	53.26	0					15	8	2	0	0	0	0.13777	1	4202	4202		104.06	2.5969	1	1896500	+		22690	18005	18540	18563	25161	25161					0.0151160142986555
KELEAFREEL	10	Unmodified	_KELEAFREEL_					0	0	0		ENST00000296325.9_1_4:3514703-3533784:-|nuORF;ENSG00000163956|ENST00000650182|LRPAP1	ENST00000296325.9_1_4:3514703-3533784:-|nuORF	ENST00000296325.9_1_4:3514703-3533784:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	632.3373413085938	2	632.33261	1262.65067	2.2858	0.0014454	0.25156	0.00015907	2.5374	0.0016045	632.3324577632499	78.054	1.0777	78.054	77.714	78.791	0					58	25	4	0	0	0	0.11632	1	7891	7891		109.48	10.896	1	2697200			22691	6386	18541	18564	25162	25162					0.029847474980670086
KELEAFREEL	10	Unmodified	_KELEAFREEL_					0	0	0		ENST00000296325.9_1_4:3514703-3533784:-|nuORF;ENSG00000163956|ENST00000650182|LRPAP1	ENST00000296325.9_1_4:3514703-3533784:-|nuORF	ENST00000296325.9_1_4:3514703-3533784:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	632.33261	1262.65067	-0.45863	-0.00029	-3.2186	-0.0020352	-3.6773	-0.0023253	632.3304256211512	79.906	0.74789	78.211	77.871	78.618	-1.6951	0.078612	-0.0039545	NaN	109.48	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37693			22692	6386	18541	18564							0.029847474980670086
KELEATKQYL	10	Unmodified	_KELEATKQYL_					0	0	0		ENSG00000162849|ENST00000407071|KIF26B;nc|ENSG00000162849|Q2KJY2-2|KIF26B	ENSG00000162849|ENST00000407071|KIF26B	ENSG00000162849|ENST00000407071|KIF26B	MULTI-MSMS	OvCa99_classI_Rep5	1	611.8399658203125	2	611.837528	1221.6605	0.39794	0.00024347	-0.21976	-0.00013446	0.17818	0.00010902	611.8372414118656	58.12	0.71325	58.12	57.859	58.572	0					36	16	4	0	0	0	0.072956	1	4915	4915		120.31	53.344	1	2265500			22693	6240	18542	18565	25163	25163					0.058539355034326945
KELEDKVIEL	10	Unmodified	_KELEDKVIEL_					0	0	0		nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3;ENST00000581757.1_1_18:5431369-5434107:-|nuORF;nc|ENSG00000082397|Q9Y2J2-3|EPB41L3	nc|ENSG00000082397|Q9Y2J2-2|EPB41L3	nc|ENSG00000082397|Q9Y2J2-2|EPB41L3	MULTI-MSMS	OvCa99_classI_Rep5	1	608.3471069335938	2	608.345186	1214.67582	2.3448	0.0014264	-0.35827	-0.00021795	1.9865	0.0012085	608.3448824273989	79.828	0.81377	79.828	79.585	80.399	0					42	19	3	0	0	0	0.026604	1	8162	8162		140.11	22.586	1	801870			22694	1677	18543	18566	25164	25164					0.0770680230061771
KELEEEITL	9	Unmodified	_KELEEEITL_					0	0	0		ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	MULTI-MSMS	OvCa99_classI_Rep5	1	552.297607421875	2	552.295162	1102.57577	1.6477	0.00091003	-1.8866	-0.001042	-0.23886	-0.00013192	552.294139399146	93.083	1.3291	93.083	92.594	93.923	0					86	31	5	0	0	0	0.094791	1	10072	10072		98.582	13.421	1	6396100			22695	4281	18544	18567	25165	25165					0.028585649668229962
KELEEEITL	9	Unmodified	_KELEEEITL_					0	0	0		ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	552.295162	1102.57577	0.36473	0.00020144	-0.20923	-0.00011556	0.1555	8.5883E-05	552.2947354309013	94.205	0.66525	93.106	92.696	93.361	-1.0995	0.042305	-0.00033818	NaN	98.582	37	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105210			22696	4281	18544	18567							0.028585649668229962
KELEEEITL	9	Unmodified	_KELEEEITL_					0	0	0		ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	552.295162	1102.57577	-0.95976	-0.00053007	0.9144	0.00050502	-0.045361	-2.5053E-05	552.2953093371723	94.919	0.85227	93.023	92.561	93.414	-1.8956	-0.039866	0.00090296	NaN	98.582	51	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170590			22697	4281	18544	18567							0.028585649668229962
KELEEEITL	9	Unmodified	_KELEEEITL_					0	0	0		ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	552.295162	1102.57577	-1.2751	-0.00070421	0.36548	0.00020185	-0.90959	-0.00050236	552.295305197148	95.509	0.65244	93.041	92.711	93.363	-2.4685	-0.022575	0.00029663	NaN	98.582	47	12	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185300			22698	4281	18544	18567							0.028585649668229962
KELEEELQHL	10	Unmodified	_KELEEELQHL_					0	0	0		ENSG00000144747|ENST00000398559|TMF1;nc|ENSG00000144747|P82094-2|TMF1	ENSG00000144747|ENST00000398559|TMF1	ENSG00000144747|ENST00000398559|TMF1	MULTI-MSMS	OvCa99_classI_Rep5	1	634.3327026367188	2	634.330067	1266.64558	1.6005	0.0010152	0.18612	0.00011806	1.7866	0.0011333	634.3300259918256	79.087	0.52512	79.087	78.869	79.394	0					35	12	4	0	0	0	0.018026	1	8041	8041		152.06	58.918	1	2808500			22699	5180	18545	18568	25166	25166					0.02292443635451491
KELEEKVAEL	10	Unmodified	_KELEEKVAEL_					0	0	0		nc|ENSG00000079819|O43491-2|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2	nc|ENSG00000079819|O43491-2|EPB41L2	nc|ENSG00000079819|O43491-2|EPB41L2	MULTI-MSMS	OvCa99_classI_Rep5	1	594.33154296875	2	594.329536	1186.64452	-0.823	-0.00048913	0.14606	8.6807E-05	-0.67694	-0.00040233	594.3294615687571	64.26	0.8196	64.26	63.974	64.793	0					49	19	4	0	0	0	3.6451E-06	1	5825	5825		196.52	17.97	1	4239400			22700	1622	18546	18569	25167	25167					0.05866229266553091
KELEFQDLRA	10	Unmodified	_KELEFQDLRA_					0	0	0		nc|ENSG00000172554|Q9NY99-2|SNTG2;ENSG00000172554|ENST00000308624|SNTG2	nc|ENSG00000172554|Q9NY99-2|SNTG2	nc|ENSG00000172554|Q9NY99-2|SNTG2	MULTI-MSMS	OvCa9_classI_Rep3	3	624.833984375	2	624.832777	1247.651	-0.22894	-0.00014305	0.12143	7.5875E-05	-0.10751	-6.7177E-05	624.832799150308	93.664	2.1214	91.702	91.378	93.499	-1.9617					124	41	5	0	0	0	0.43433	1	6024	6024		63.534	1.8426	1	1089200			22701	7305	18547	18570	25168	25168					0.03708167217905611
KELEHRRKV	9	Unmodified	_KELEHRRKV_					0	0	0			REV__tr|A0A7D6VSW4|A0A7D6VSW4_9CLOTRibonucleaseYOS=ClostridiumintestinaleOX=36845GN=rnyPE=3SV=1	REV__tr|A0A7D6VSW4|A0A7D6VSW4_9CLOTRibonucleaseYOS=ClostridiumintestinaleOX=36845GN=rnyPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8558959960938	2	597.856921	1193.69929	-2.4902	-0.0014888	1.4044	0.0008396	-1.0859	-0.00064919	597.8575960796461	144.35	4.0594	144.12	142.06	146.12	-0.22696					210	81	4	0	0	0	0.69403	1	14562	14562		19.997	2.5288	1	136500	+		22702	31548	18548	18571	25169	25169					0.11018705648439209
KELEHVKMEL	10	Unmodified	_KELEHVKMEL_					0	0	0		ENSG00000168386|ENST00000477258|FILIP1L;nc|ENSG00000168386|Q4L180-6|FILIP1L;nc|ENSG00000168386|Q4L180-5|FILIP1L;nc|ENSG00000168386|Q4L180-3|FILIP1L;nc|ENSG00000168386|Q4L180-7|FILIP1L;nc|ENSG00000168386|Q4L180-2|FILIP1L;nc|ENSG00000168386|Q4L180|FILIP1L	ENSG00000168386|ENST00000477258|FILIP1L	ENSG00000168386|ENST00000477258|FILIP1L	MULTI-MSMS	OvCa99_classI_Rep5	1	419.2298889160156	3	419.228679	1254.66421	0.2806	0.00011763	-0.53717	-0.0002252	-0.25658	-0.00010756	419.22837660398466	61.064	0.80988	61.064	60.816	61.626	0					46	18	4	0	0	0	0.22809	2	5356	5356;5384		90.149	15.984	1	2538300			22703	6898	18549	18572	25170;25171	25170					0.04706282005645335
KELELLTI	8	Unmodified	_KELELLTI_					0	0	0		nc|nan|Q3C1V1-2|C11orf91;ENSG00000205177|ENST00000379011|C11orf91	nc|nan|Q3C1V1-2|C11orf91	nc|nan|Q3C1V1-2|C11orf91	MULTI-MSMS	OvCa9_classI_Rep2	2	479.7942810058594	2	479.794601	957.574648	0.29407	0.00014109	-0.35762	-0.00017158	-0.063546	-3.0489E-05	479.7942116842969	112.03	1.2323	111.89	111.67	112.9	-0.13961					50	24	3	0	0	0	0.50747	1	10597	10597		76.774	0	1	144000			22704	9056	18550	18573	25172	25172					0.09416395388586807
KELEQKKSYL	10	Unmodified	_KELEQKKSYL_					0	0	0		ENSG00000113068|ENST00000261813|PFDN1	ENSG00000113068|ENST00000261813|PFDN1	ENSG00000113068|ENST00000261813|PFDN1	MULTI-MSMS	OvCa99_classI_Rep5	1	422.5750732421875	3	422.574844	1264.7027	-0.53864	-0.00022762	0.47855	0.00020223	-0.06009	-2.5392E-05	422.57499429875253	37.345	1.5028	37.345	36.751	38.254	0					67	32	5	0	0	0	0.40664	1	2033	2033		89.029	35.94	1	2183200			22705	2946	18551	18574	25173	25173					0.08093910911838975
KELEQKKSYL	10	Unmodified	_KELEQKKSYL_					0	0	0		ENSG00000113068|ENST00000261813|PFDN1	ENSG00000113068|ENST00000261813|PFDN1	ENSG00000113068|ENST00000261813|PFDN1	MULTI-MSMS	OvCa99_classI_Rep5	1	633.3582153320312	2	633.358628	1264.7027	-0.45308	-0.00028696	0.42691	0.00027038	-0.026172	-1.6576E-05	633.3589304952511	37.362	0.60046	37.362	37.114	37.714	0					31	12	5	0	0	0	0.023817	1	2042	2042		143.37	23.068	1	665510			22706	2946	18551	18574	25174	25174					0.08093910911838975
KELERILDP	9	Unmodified	_KELERILDP_					0	0	0		ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.7412719726562	2	556.819138	1111.62372	-0.37994	-0.00021156	1.3817	0.00076935	1.0017	0.00055779	556.8199652169351	54.755	0.9215	51.508	50.774	51.695	-3.2474					33	17	2	0	0	0	0.027446	1	3406	3406		51.193	0	1	68688			22707	6591	18552	18575	25175	25175					0.07237683677522
KELEWEIR	8	Unmodified	_KELEWEIR_					0	0	0			REV__ENSG00000120645|ENST00000538872|IQSEC3	REV__ENSG00000120645|ENST00000538872|IQSEC3	MULTI-MSMS	OvCa99_classI_Rep5	1	551.7966918945312	2	551.798206	1101.58186	-0.73238	-0.00040413	-2.7207	-0.0015013	-3.4531	-0.0019054	551.7965166768669	25.267	0.45164	25.267	25.092	25.544	0					16	8	3	0	0	0	0.60899	1	548	548		62.107	0.41614	1	133390	+		22708	18505	18553	18576	25176	25176					0.035131279889810685
KELEWEIR	8	Unmodified	_KELEWEIR_					0	0	0			REV__ENSG00000120645|ENST00000538872|IQSEC3	REV__ENSG00000120645|ENST00000538872|IQSEC3	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	551.798206	1101.58186	-0.73238	-0.00040413	-2.7207	-0.0015013	-3.4531	-0.0019054	551.7965166768669	25.267	0.45164	25.267	25.092	25.544	0	0	0	NaN	62.107	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133390	+		22709	18505	18553	18576							0.035131279889810685
KELFIEDP	8	Unmodified	_KELFIEDP_					0	0	0		nc|ENSG00000112659|Q8IWT3-3|CUL9;ENSG00000112659|ENST00000252050|CUL9;ENST00000515773.5_1_6:43164260-43192180:+|nuORF	nc|ENSG00000112659|Q8IWT3-3|CUL9	nc|ENSG00000112659|Q8IWT3-3|CUL9	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.62750244140625	2	495.760758	989.506963	-0.68039	-0.00033731	-3.8947	-0.0019308	-4.5751	-0.0022682	495.7587464359326	29.062	0.44927	29.062	28.937	29.387	0					11	8	2	0	0	0	0.028476	1	1026	1026		10.866	0	1	83728			22710	2917	18554	18577	25177	25177					0.011789454577524339
KELFPAPVL	9	Unmodified	_KELFPAPVL_					0	0	0		ENSG00000150337|ENST00000369168|FCGR1A;ENST00000472543.1_1:120928502-120934612:-|nuORF;nc|ENSG00000291135|Q92637-2|FCGR1BP;nc|ENSG00000150337|P12314-2|FCGR1A	ENSG00000150337|ENST00000369168|FCGR1A	ENSG00000150337|ENST00000369168|FCGR1A	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.3038330078125	2	507.305136	1012.59572	-0.0021193	-1.0752E-06	-3.3289	-0.0016888	-3.331	-0.0016898	507.3032500698358	115.55	1.6495	114.15	113.41	115.06	-1.3977					79	32	3	0	0	0	0.34132	1	10715	10715		58.23	2.7257	1	276450			22711	5504	18555	18578	25178	25178					0.08992405488072563
KELFSDMV	8	Unmodified	_KELFSDMV_					0	0	0			REV__ENST00000371284.9_1_1:55181548-55181722:+|nuORF	REV__ENST00000371284.9_1_1:55181548-55181722:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.2709655761719	2	484.741511	967.468469	-0.37857	-0.00018351	1.7993	0.00087219	1.4207	0.00068868	484.743753509021	48.678	0.4393	48.678	48.501	48.94	0					12	9	2	0	0	0	0.028476	1	3595	3595		51.335	15.717	1	34489	+		22712	23468	18556	18579	25179	25179					-0.016566834484024184
KELFVPIAD	9	Unmodified	_KELFVPIAD_					0	0	0			REV__nc|ENSG00000153827|Q14669-4|TRIP12;REV__ENST00000479037.5_1_2:230672327-230744801:-|nuORF	REV__nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.2987670898438	2	516.292225	1030.5699	0.84911	0.00043839	-0.29006	-0.00014976	0.55905	0.00028864	516.7942363327678	103.75	0.6825	102.31	101.97	102.66	-1.4347					16	12	2	0	0	0	0.027462	1	7230	7230		23.523	0	1	17875	+		22713	20349;26427	18557	18580	25180	25180					0.05583511245822592
KELGKFTGLK	10	Unmodified	_KELGKFTGLK_					0	0	0		nc|ENSG00000123064|Q8TDD1-2|DDX54;ENSG00000123064|ENST00000306014|DDX54;DDX54|p.T186S|1|0.33|ENSG00000123064|chr12:113179150-113179150|G/C|missense_variant	nc|ENSG00000123064|Q8TDD1-2|DDX54	nc|ENSG00000123064|Q8TDD1-2|DDX54	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.7564697265625	2	560.839874	1119.66519	2.9672	0.0016641	-1.471	-0.000825	1.4962	0.00083911	560.8389410118077	80.258	1.304	80.258	79.944	81.248	0					74	30	5	0	0	0	0.026714	1	8190	8190		35.152	0	1	7275900			22714	3567	18558	18581	25181	25181					0.11014864436833705
KELGVGIAL	9	Unmodified	_KELGVGIAL_					0	0	0		ENST00000477993.1_1_7:152139663-152139723:+|nuORF;ENSG00000164687|ENST00000297258|FABP5	ENST00000477993.1_1_7:152139663-152139723:+|nuORF	ENST00000477993.1_1_7:152139663-152139723:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.2680969238281	2	450.28166	898.548768	2.046	0.00092128	0.23085	0.00010395	2.2769	0.0010252	450.2815696618192	98.187	0.63861	98.187	97.78	98.419	0					29	14	3	0	0	0	0.02741	1	10814	10814		82.305	5.4584	1	2178800			22715	6476	18559	18582	25182	25182					0.09543545936935516
KELHDLFNLP	10	Unmodified	_KELHDLFNLP_					0	0	0		ENSG00000109775|ENST00000264689|UFSP2	ENSG00000109775|ENST00000264689|UFSP2	ENSG00000109775|ENST00000264689|UFSP2	MULTI-MSMS	OvCa99_classI_Rep5	1	613.33447265625	2	613.332413	1224.65027	2.6454	0.0016225	-0.31636	-0.00019403	2.329	0.0014285	613.3321347747326	115.75	1.1156	115.75	115.3	116.42	0					76	23	5	0	0	0	0.5635	1	13202	13202		46.457	8.6453	1	5903300			22716	2733	18560	18583	25183	25183					0.04693372568840459
KELHDMFMDI	10	Unmodified	_KELHDMFMDI_					0	0	0		nc|ENSG00000166900|Q13277-2|STX3;nc|ENSG00000166900|Q13277-3|STX3;ENSG00000166900|ENST00000337979|STX3;ENST00000533637.5_1_11:59556413-59568372:+|nuORF	nc|ENSG00000166900|Q13277-2|STX3	nc|ENSG00000166900|Q13277-2|STX3	MULTI-MSMS	OvCa99_classI_Rep5	1	639.799560546875	2	639.796491	1277.57843	1.4092	0.00090163	0.70013	0.00044794	2.1094	0.0013496	639.7967656549084	150.33	1.5099	150.33	149.94	151.45	0					61	29	4	0	0	0	0.39172	1	17605	17605		69.628	0	1	1620400			22717	6732	18561	18584	25184	25184					-0.049256261715527216
KELHIQGNRL	10	Unmodified	_KELHIQGNRL_					0	0	0		ENSG00000148484|ENST00000345264|RSU1;ENST00000464074.6_1_10:16769067-16859404:-|nuORF;nc|ENSG00000148484|Q15404-2|RSU1	ENSG00000148484|ENST00000345264|RSU1	ENSG00000148484|ENST00000345264|RSU1	MULTI-MSMS	OvCa99_classI_Rep5	1	403.23529052734375	3	403.235045	1206.6833	0.067194	2.7095E-05	0.03025	1.2198E-05	0.097443	3.9293E-05	403.23499572651116	43.761	0.87204	43.761	43.478	44.35	0					60	19	5	0	0	0	0.29438	2	2928	2906;2928		81.525	26.441	1	3013400			22718	5415	18562	18585	25185;25186	25186					0.08822999411563615
KELIEEGKI	9	Unmodified	_KELIEEGKI_					0	0	0		tr|A0A553SRG1|A0A553SRG1_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_01000PE=4SV=1;tr|A0A7D6VQS2|A0A7D6VQS2_9CLOTGfo/Idh/MocAfamilyoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16205PE=3SV=1	tr|A0A553SRG1|A0A553SRG1_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_01000PE=4SV=1	tr|A0A553SRG1|A0A553SRG1_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_01000PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	529.8101196289062	2	529.808239	1057.60193	-2.0506	-0.0010864	0.47015	0.00024909	-1.5804	-0.00083734	529.8087799163501	61.613	2.1042	58.853	58.308	60.412	-2.7593					163	40	7	0	0	0	0.070405	1	4599	4599		107.01	5.4068	1	1928300			22719	34261	18563	18586	25187	25187					0.07542878928961727
KELIGKIEKLT	11	Unmodified	_KELIGKIEKLT_					0	0	0			REV__tr|A0A553SP38|A0A553SP38_NIACIRibonucleaseHIIOS=NialliacirculansOX=1397GN=rnhBPE=3SV=1	REV__tr|A0A553SP38|A0A553SP38_NIACIRibonucleaseHIIOS=NialliacirculansOX=1397GN=rnhBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	636.3984375	2	636.400295	1270.78604	-6.5368	-0.00416	3.4591	0.0022014	-3.0777	-0.0019586	636.4023674987772	159.22	1.0639	157.95	157.66	158.73	-1.267					49	20	4	0	0	0	0.72479	1	13787	13787		18.262	0	1	88247	+		22720	30487	18564	18587	25188	25188					0.16147647359662187
KELIPMQQI	9	Unmodified	_KELIPMQQI_					0	0	0		ENSG00000160908|ENST00000337673|ZNF394	ENSG00000160908|ENST00000337673|ZNF394	ENSG00000160908|ENST00000337673|ZNF394	MULTI-MSMS	OvCa99_classI_Rep5	1	550.3141479492188	2	550.312635	1098.61072	1.802	0.00099168	-2.8335	-0.0015593	-1.0315	-0.00056765	550.3108709607916	78.113	1.0367	78.113	77.714	78.75	0					56	24	3	0	0	0	0.11471	1	7884	7884		93.195	8.0346	1	2657500			22721	6102	18565	18588	25189	25189					0.06535529293773834
KELIPTEEAL	10	Unmodified	_KELIPTEEAL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	OvCa99_classI_Rep5	1	571.8195190429688	2	571.818804	1141.62306	2.0012	0.0011443	0.45337	0.00025924	2.4546	0.0014036	571.818846967787	92.827	0.70796	92.827	92.555	93.263	0					40	16	4	0	0	0	0.30325	1	10040	10040		80.455	16.247	1	2562000			22722	7740	18566	18589	25190	25190					0.05790844237822057
KELIVLGG	8	Unmodified	_KELIVLGG_					0	0	0			REV__tr|A0A7D6ZVN7|A0A7D6ZVN7_9CLOTDMTfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_15650PE=3SV=1	REV__tr|A0A7D6ZVN7|A0A7D6ZVN7_9CLOTDMTfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_15650PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	414.7618103027344	2	414.763104	827.511654	-0.47497	-0.000197	-2.6059	-0.0010808	-3.0808	-0.0012778	414.761930419043	140.08	2.1671	139.86	139.4	141.57	-0.22696					123	43	4	0	0	0	0.74971	1	13994	13994		26.796	6.3143	1	474850	+		22723	32258	18567	18590	25191	25191					0.09099874391188223
KELIYVVKAS	10	Unmodified	_KELIYVVKAS_					0	0	0			REV__GIGYF2-DIS3L2|3|fusion	REV__GIGYF2-DIS3L2|3|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	575.3449096679688	2	575.347532	1148.68051	-6.2917	-0.0036199	2.5771	0.0014827	-3.7146	-0.0021372	575.3489585356984	154.97	1.0558	153.9	153.56	154.61	-1.073					68	25	4	0	0	0	0.70152	1	13309	13309		30.318	7.2752	1	137860	+		22724	19916	18568	18591	25192	25192					0.11211731234061517
KELKFPLDE	9	Unmodified	_KELKFPLDE_					0	0	0			REV__nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2	REV__nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2	MULTI-SECPEP	OvCa9_classI_Rep3	3	560.804443359375	2	559.808239	1117.60193	-0.85404	-0.0004781	3.3418	0.0018708	2.4877	0.0013927	559.8097977173609	97.648	0.84808	95.889	95.62	96.469	-1.7595					29	16	2	0	0	0	0.027462	1	6458	6458		42.396	1.618	1	148020	+		22725	17077	18569	18592	25193	25193					0.047828789289496854
KELKIEEY	8	Unmodified	_KELKIEEY_					0	0	0			REV__nc|ENSG00000105792|A5D8W1-2|CFAP69	REV__nc|ENSG00000105792|A5D8W1-2|CFAP69	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.2725830078125	2	526.28714	1050.55973	-0.29664	-0.00015612	-0.34734	-0.0001828	-0.64397	-0.00033891	526.2869891309896	98.014	1.1132	95.636	95.267	96.38	-2.3786					40	21	3	0	0	0	0.028476	1	8663	8663		29.15	0	1	65911	+		22726	15783	18570	18593	25194	25194					0.03646903520575506
KELKLKEEI	9	Unmodified	_KELKLKEEI_					0	0	0		nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-4|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.3170166015625	2	565.344989	1128.67542	1.3614	0.00076968	3.1137	0.0017603	4.4751	0.00253	565.3450876546515	59.886	0.3912	56.456	56.259	56.65	-3.43					6	5	2	0	0	0	0.023563	1	4045	4045		131.03	0	1	19742			22727	4667	18571	18594	25195	25195					0.11623427371409889
KELKMAEIK	9	Unmodified	_KELKMAEIK_					0	0	0		ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3187255859375	2	545.32046	1088.62637	-1.828	-0.00099686	-1.9254	-0.00105	-3.7534	-0.0020468	545.3193247612335	62.213	1.8935	59.454	58.882	60.775	-2.7593					104	36	5	0	0	0	0.16562	1	4679	4679		82.241	1.7859	1	1098800			22728	2737	18572	18595	25196	25196					0.08559815810804139
KELLAKPRT	9	Unmodified	_KELLAKPRT_					0	0	0			REV__ENST00000262662.5_1_1:51435291-51435357:+|nuORF	REV__ENST00000262662.5_1_1:51435291-51435357:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	528.3322143554688	2	528.332216	1054.64988	3.0268	0.0015991	-3.0942	-0.0016348	-0.067462	-3.5642E-05	528.330384856165	25.512	0.98969	22.802	22.428	23.418	-2.7097					46	22	4	0	0	0	0.69913	1	281	281		18.262	0.89712	1	151950	+		22729	23982	18573	18596	25197	25197					0.12473997639654044
KELLLKPHS	9	Unmodified	_KELLLKPHS_					0	0	0		SPDEF|p.Y265H|1|0.13|ENSG00000124664|chr6:34539286-34539286|A/G|missense_variant;nc|ENSG00000124664|O95238-2|SPDEF;ENSG00000124664|ENST00000374037|SPDEF	SPDEF|p.Y265H|1|0.13|ENSG00000124664|chr6:34539286-34539286|A/G|missense_variant	SPDEF|p.Y265H|1|0.13|ENSG00000124664|chr6:34539286-34539286|A/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.28076171875	2	532.826766	1063.63898	2.0032	0.0010673	-0.33768	-0.00017992	1.6655	0.00088742	532.8264961953626	85.406	0.41686	85.406	85.127	85.544	0					18	9	3	0	0	0	0.027462	1	8966	8966		35.152	1.6364	1	413090			22730	3669	18574	18597	25198	25198					0.1097059526537123
KELLLQPVTI	10	Unmodified	_KELLLQPVTI_					0	0	0		nc|ENSG00000241553|P59998-2|ARPC4;ENSG00000241553|ENST00000397261|ARPC4;ENST00000467289.5_1_3:9834805-9845712:+|nuORF;nc|ENSG00000241553|P59998-3|ARPC4	nc|ENSG00000241553|P59998-2|ARPC4;ENSG00000241553|ENST00000397261|ARPC4	ENSG00000241553|ENST00000397261|ARPC4	MULTI-MSMS	OvCa9_classI_Rep2	2	577.3624267578125	2	577.363182	1152.71181	-0.4126	-0.00023822	-0.053214	-3.0724E-05	-0.46581	-0.00026894	577.3630679172877	113.98	1.2827	113.86	113.57	114.85	-0.11777					64	25	4	0	0	0	0.28355	5	10843	10825;10830;10836;10843;10848		82.831	33.294	1	274910			22731	9352;15339	18575	18598	25199;25200;25201;25202;25203	25202					0.14156304268158237
KELLLQPVTI	10	Unmodified	_KELLLQPVTI_					0	0	0		nc|ENSG00000241553|P59998-2|ARPC4;ENSG00000241553|ENST00000397261|ARPC4;ENST00000467289.5_1_3:9834805-9845712:+|nuORF;nc|ENSG00000241553|P59998-3|ARPC4	nc|ENSG00000241553|P59998-2|ARPC4;ENSG00000241553|ENST00000397261|ARPC4	ENSG00000241553|ENST00000397261|ARPC4	MULTI-MSMS	OvCa9_classI_Rep3	3	577.363037109375	2	577.363182	1152.71181	-0.99226	-0.00057289	0.86323	0.0004984	-0.12902	-7.4492E-05	577.3635192275176	114.88	1.2829	113.83	113.5	114.78	-1.055					71	25	4	0	0	0	0.16967	5	8513	8497;8501;8507;8513;8520		99.013	22.843	1	288450			22732	9352;15339	18575	18598	25204;25205;25206;25207;25208	25207					0.14156304268158237
KELLLQPVTI	10	Unmodified	_KELLLQPVTI_					0	0	0		nc|ENSG00000241553|P59998-2|ARPC4;ENSG00000241553|ENST00000397261|ARPC4;ENST00000467289.5_1_3:9834805-9845712:+|nuORF;nc|ENSG00000241553|P59998-3|ARPC4	nc|ENSG00000241553|P59998-2|ARPC4;ENSG00000241553|ENST00000397261|ARPC4	ENSG00000241553|ENST00000397261|ARPC4	MULTI-MSMS	OvCa9_classI_Rep4_	4	577.3623046875	2	577.363182	1152.71181	-0.12413	-7.1669E-05	-0.25595	-0.00014778	-0.38008	-0.00021944	577.3629137291616	115.15	1.3493	113.75	113.46	114.81	-1.3977					68	26	3	0	0	0	0.31125	4	10701	10701;10713;10725;10745		79.489	21.228	1	384710			22733	9352;15339	18575	18598	25209;25210;25211;25212	25209					0.14156304268158237
KELLVKRY	8	Unmodified	_KELLVKRY_					0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	MULTI-MSMS	OvCa9_classI_Rep3	3	524.8256225585938	2	524.829309	1047.64407	-6.4209	-0.0033699	2.2692	0.001191	-4.1517	-0.0021789	524.8303693371411	156.49	1.5557	155.32	154.95	156.51	-1.1687					100	33	5	0	0	0	0.75241	1	13521	13521		25.45	1.2474	1	1025700	+		22734	22473	18576	18599	25213	25213					0.12214899127980061
KELNNGMEKI	10	Unmodified	_KELNNGMEKI_					0	0	0		tr|A0A553SMS2|A0A553SMS2_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_23110PE=3SV=1	tr|A0A553SMS2|A0A553SMS2_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_23110PE=3SV=1	tr|A0A553SMS2|A0A553SMS2_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_23110PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	588.3065185546875	2	588.308081	1174.60161	-1.0695	-0.0006292	1.0508	0.0006182	-0.018703	-1.1003E-05	588.3085738686653	63.984	2.3836	61.259	60.708	63.092	-2.7248					124	45	5	0	0	0	0.28422	1	4865	4865		82.75	15.257	1	1044000			22735	33867	18577	18600	25214	25214					0.021291359374572494
KELPEYYEL	9	Unmodified	_KELPEYYEL_					0	0	0		nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;ENST00000592604.5_1_19:11123597-11172489:+|nuORF;ENST00000585799.5_1_19:11132109-11172489:+|nuORF;ENST00000591595.5_1_19:11130023-11172489:+|nuORF	nc|ENSG00000080503|P51531-2|SMARCA2;ENST00000585799.5_1_19:11132109-11172489:+|nuORF;ENST00000591595.5_1_19:11130023-11172489:+|nuORF	nc|ENSG00000080503|P51531-2|SMARCA2	MULTI-MSMS	OvCa99_classI_Rep5	1	592.311279296875	2	592.297704	1182.58086	2.4161	0.001431	0.31157	0.00018454	2.7277	0.0016156	592.2977327871645	95.013	0.63819	95.013	94.732	95.37	0					22	14	2	0	0	0	0.1804	1	10352	10352		79.713	22.992	1	3012900			22736	1636;14041;14122	18578	18601	25215	25215					-0.003131311705828921
KELPFTPLG	9	Unmodified	_KELPFTPLG_					0	0	0		PIKFYVE|p.V1377Sfs*13|1|0.04|ENSG00000115020|chr2:208333479-208333480|-/A|frameshift_variant;ENSG00000115020|ENST00000264380|PIKFYVE	PIKFYVE|p.V1377Sfs*13|1|0.04|ENSG00000115020|chr2:208333479-208333480|-/A|frameshift_variant	PIKFYVE|p.V1377Sfs*13|1|0.04|ENSG00000115020|chr2:208333479-208333480|-/A|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.3074645996094	2	501.286943	1000.55933	-0.67555	-0.00033865	-3.8809	-0.0019454	-4.5564	-0.0022841	501.28500219698884	44.517	0.67087	44.517	44.169	44.84	0					41	14	5	0	0	0	0.027418	1	3001	3001		68.787	30.975	1	1349700			22737	3057	18579	18602	25216	25216					0.05907528591387745
KELPPLHT	8	Unmodified	_KELPPLHT_					0	0	0			REV__NAV2|p.D962Ifs*69|1|0.03|ENSG00000166833|chr11:20036003-20036004|-/CATTCTTTTTCATCTTTTTA|frameshift_variant	REV__NAV2|p.D962Ifs*69|1|0.03|ENSG00000166833|chr11:20036003-20036004|-/CATTCTTTTTCATCTTTTTA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	467.7732849121094	2	467.77146	933.528367	-0.32634	-0.00015265	0.060542	2.832E-05	-0.26579	-0.00012433	467.7712634052144	54.399	0.67665	54.399	54.172	54.848	0					42	15	4	0	0	0	0.48084	1	4385	4385		79.451	5.4763	1	1475900	+		22738	28697	18580	18603	25217	25217					0.058943752771256186
KELPPLHT	8	Unmodified	_KELPPLHT_					0	0	0			REV__NAV2|p.D962Ifs*69|1|0.03|ENSG00000166833|chr11:20036003-20036004|-/CATTCTTTTTCATCTTTTTA|frameshift_variant	REV__NAV2|p.D962Ifs*69|1|0.03|ENSG00000166833|chr11:20036003-20036004|-/CATTCTTTTTCATCTTTTTA|frameshift_variant	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	467.77146	933.528367	-0.32634	-0.00015265	0.060542	2.832E-05	-0.26579	-0.00012433	467.7712634052144	54.399	0.67665	54.399	54.172	54.848	0	0	0	NaN	79.451	42	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1475900	+		22739	28697	18580	18603							0.058943752771256186
KELPYFEGDF	10	Unmodified	_KELPYFEGDF_					0	0	0		ENSG00000005339|ENST00000262367|CREBBP;nc|ENSG00000005339|Q92793-2|CREBBP;ENSG00000100393|ENST00000263253|EP300	ENSG00000005339|ENST00000262367|CREBBP;ENSG00000100393|ENST00000263253|EP300	ENSG00000005339|ENST00000262367|CREBBP	MULTI-MSMS	OvCa9_classI_Rep3	3	415.5329284667969	3	415.532645	1243.5761	2.6424	0.001098	1.3211	0.00054895	3.9634	0.0016469	415.5330543801677	60.489	0.8731	57.39	57.093	57.967	-3.0993					52	25	3	0	0	0	0.76328	1	2026	2026		23.378	5.5448	1	21318			22740	851;2061	18581	18604	25218	25218					-0.03594015313319687
KELQAHGADEL	11	Unmodified	_KELQAHGADEL_					0	0	0		ENSG00000163466|ENST00000315717|ARPC2;ENST00000489598.5_1_2:219082193-219099125:+|nuORF;ENST00000491780.5_1_2:219082193-219100082:+|nuORF;ENST00000465395.5_1_2:219082193-219103574:+|nuORF	ENSG00000163466|ENST00000315717|ARPC2	ENSG00000163466|ENST00000315717|ARPC2	MULTI-MSMS	OvCa99_classI_Rep5	1	605.8077392578125	2	605.806759	1209.59897	0.66596	0.00040344	-0.59289	-0.00035918	0.073068	4.4265E-05	605.8063149438387	45.782	0.61568	45.782	45.582	46.198	0					34	13	4	0	0	0	0.059541	1	3187	3187		109.83	31.566	1	904930			22741	6310	18582	18605	25219	25219					0.002550038041363223
KELQALEEKKL	11	Unmodified	_KELQALEEKKL_					0	0	0		tr|A0A553SQM1|A0A553SQM1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07965PE=4SV=1	tr|A0A553SQM1|A0A553SQM1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07965PE=4SV=1	tr|A0A553SQM1|A0A553SQM1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07965PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.71868896484375	3	443.597649	1327.77112	-0.67715	-0.00030038	1.5934	0.00070681	0.91621	0.00040643	443.5982595114899	46.359	0.88301	43.286	42.876	43.759	-3.0724					37	16	4	0	0	0	0.026068	1	2447	2447		21.78	1.75	1	54801			22742	34176	18583	18606	25220	25220					0.12034155491619458
KELQALEEKKL	11	Unmodified	_KELQALEEKKL_					0	0	0		tr|A0A553SQM1|A0A553SQM1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07965PE=4SV=1	tr|A0A553SQM1|A0A553SQM1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07965PE=4SV=1	tr|A0A553SQM1|A0A553SQM1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07965PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	443.597649	1327.77112	1.4896	0.0006608	-0.57509	-0.00025511	0.91455	0.00040569	443.5973396279013	45.742	0.84989	43.032	42.747	43.596	-2.7097	-0.12705	-0.0011025	NaN	21.78	43	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62950			22743	34176	18583	18606							0.12034155491619458
KELQVKLLEL	10	Unmodified	_KELQVKLLEL_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.8809814453125	2	606.881739	1211.74892	0.27134	0.00016467	-0.53621	-0.00032541	-0.26487	-0.00016074	606.8813167465262	104.79	1.5728	102.68	102.38	103.95	-2.1192					69	30	4	0	0	0	0.35758	1	9503	9503		79.489	19.371	1	218420			22744	4140	18584	18607	25221	25221					0.15151975813887475
KELRALKDE	9	Unmodified	_KELRALKDE_					0	0	0			REV__TAF1L|p.I1514Qfs*6|1|0.03|ENSG00000122728|chr9:32631039-32631040|AT/-|frameshift_variant	REV__TAF1L|p.I1514Qfs*6|1|0.03|ENSG00000122728|chr9:32631039-32631040|AT/-|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	551.322265625	2	551.316763	1100.61897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.03	1	55.03	54.53	55.53	0								0	0	0	0.16802	1	4477	4477		56.721	0	1		+		22745	18611	18585	18608	25222	25222					0.07268799534745085
KELRKEKRHLR	11	Unmodified	_KELRKEKRHLR_					0	0	0		ENSG00000146909|ENST00000275820|NOM1	ENSG00000146909|ENST00000275820|NOM1	ENSG00000146909|ENST00000275820|NOM1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3107604980469	3	498.310947	1491.91101	-5.113	-0.0025478	2.9879	0.0014889	-2.125	-0.0010589	498.3123780141879	160.35	1.8473	160.12	159.68	161.53	-0.22697					120	37	4	0	0	0	0.72582	1	16361	16361		2.8518	1.3288	1	150420			22746	5317	18586	18609	25223	25223					0.18473377339387298
KELRKHTRLG	10	Unmodified	_KELRKHTRLG_					0	0	0			REV__ENST00000538665.5_1_12:68399914-68413902:+|nuORF	REV__ENST00000538665.5_1_12:68399914-68413902:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	619.3709106445312	2	619.37802	1236.74149	-5.649	-0.0034989	-4.3697	-0.0027065	-10.019	-0.0062054	619.3752552398936	159.28	1.2139	158.02	157.66	158.88	-1.267					65	23	4	0	0	0	0.81208	1	13780	13780		17.468	2.6031	1	112740	+		22747	27326	18587	18610	25224	25224					0.13258681056822752
KELRRPPPR	9	Unmodified	_KELRRPPPR_					0	0	0		SHD|p.L253Sfs*16|1|0.44|ENSG00000105251|chr19:4288282-4288283|-/T|frameshift_variant;ENSG00000105251|ENST00000543264|SHD	SHD|p.L253Sfs*16|1|0.44|ENSG00000105251|chr19:4288282-4288283|-/T|frameshift_variant	SHD|p.L253Sfs*16|1|0.44|ENSG00000105251|chr19:4288282-4288283|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.8046264648438	2	574.854181	1147.69381	-1.1557	-0.00066436	1.9563	0.0011246	0.80063	0.00046024	574.8556377775283	80.752	0.43941	78.042	77.858	78.298	-2.7106					11	8	2	0	0	0	0.027462	1	6623	6623		40.778	5.1599	1	12794			22748	2434	18588	18611	25225	25225					0.1258702685663593
KELRVLLI	8	Unmodified	_KELRVLLI_					0	0	0		ENST00000510078.5_1_3:129112637-129115133:-|nuORF	ENST00000510078.5_1_3:129112637-129115133:-|nuORF	ENST00000510078.5_1_3:129112637-129115133:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.2691650390625	2	492.334227	982.653902	-0.7797	-0.00038388	0.068833	3.3889E-05	-0.71087	-0.00034999	492.33407084922226	45.191	1.1448	42.152	41.919	43.064	-3.0385					50	21	3	0	0	0	0.028476	1	2314	2314		29.842	0	1	206920			22749	12967	18589	18612	25226	25226					0.1618808713337785
KELRVLLI	8	Unmodified	_KELRVLLI_					0	0	0		ENST00000510078.5_1_3:129112637-129115133:-|nuORF	ENST00000510078.5_1_3:129112637-129115133:-|nuORF	ENST00000510078.5_1_3:129112637-129115133:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	492.334227	982.653902	0.58016	0.00028563	-1.0688	-0.0005262	-0.48863	-0.00024057	492.33353393369697	45.15	1.1509	42.441	42.049	43.2	-2.7097	0.14414	-0.0002588	NaN	19.36	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156000			22750	12967	18589	18612							0.1618808713337785
KELSALVKL	9	Unmodified	_KELSALVKL_					0	0	0		ENSG00000165416|ENST00000310528|SUGT1;nc|ENSG00000165416|Q9Y2Z0|SUGT1	ENSG00000165416|ENST00000310528|SUGT1	ENSG00000165416|ENST00000310528|SUGT1	MULTI-MSMS	OvCa99_classI_Rep5	1	500.82525634765625	2	500.823692	999.632832	1.7533	0.0008781	0.080149	4.0141E-05	1.8335	0.00091824	500.82362506240395	81.89	0.40752	81.89	81.694	82.101	0					19	9	3	0	0	0	0.31122	1	8462	8462		61.691	13.732	1	621400			22751	6560	18590	18613	25227	25227					0.13300077033841262
KELSELKN	8	Unmodified	_KELSELKN_					0	0	0			REV__ENST00000462558.5_1_7:97937677-98030347:-|nuORF	REV__ENST00000462558.5_1_7:97937677-98030347:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.81976318359375	2	480.771657	959.528761	0.50593	0.00024324	-1.0109	-0.00048599	-0.50493	-0.00024275	480.771022150858	63.258	0.27993	63.258	63.016	63.296	0					9	6	2	0	0	0	0.028476	1	5648	5648		27.882	0	1	185900	+		22752	16416	18591	18614	25228	25228					0.04737750206322744
KELSELKN	8	Unmodified	_KELSELKN_					0	0	0			REV__ENST00000462558.5_1_7:97937677-98030347:-|nuORF	REV__ENST00000462558.5_1_7:97937677-98030347:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	480.771657	959.528761	0.50134	0.00024103	-0.35114	-0.00016882	0.1502	7.221E-05	480.7712277845136	66.265	0.69513	63.569	63.17	63.865	-2.6958	0.11638	-0.00023284	NaN	14.865	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15448	+		22753	16416	18591	18614							0.04737750206322744
KELSELKN	8	Unmodified	_KELSELKN_					0	0	0			REV__ENST00000462558.5_1_7:97937677-98030347:-|nuORF	REV__ENST00000462558.5_1_7:97937677-98030347:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	480.771657	959.528761	0.30523	0.00014675	0.0042144	2.0262E-06	0.30945	0.00014877	480.7716740626786	67.021	0.78948	63.531	63.099	63.888	-3.4902	0.077977	0.00010885	NaN	14.865	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41521	+		22754	16416	18591	18614							0.04737750206322744
KELSTKKDI	9	Unmodified	_KELSTKKDI_					0	0	0		ENSG00000089335|ENST00000505242|ZNF302;ENST00000509196.1_1_19:35173669-35176139:+|nuORF	ENSG00000089335|ENST00000505242|ZNF302	ENSG00000089335|ENST00000505242|ZNF302	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.3126220703125	2	531.313689	1060.61282	1.0639	0.00056526	0.27181	0.00014442	1.3357	0.00070967	531.3146134564535	83.302	0.50964	83.302	83.078	83.588	0					16	11	2	0	0	0	0.027461	1	8693	8693		40.778	0	1	276820			22755	1821	18592	18615	25229	25229					0.0849428130322849
KELTEIKNN	9	Unmodified	_KELTEIKNN_					0	0	0		tr|A0A7D6VT84|A0A7D6VT84_9CLOT[ribosomalproteinuS5]-alanineN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16180PE=3SV=1	tr|A0A7D6VT84|A0A7D6VT84_9CLOT[ribosomalproteinuS5]-alanineN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16180PE=3SV=1	tr|A0A7D6VT84|A0A7D6VT84_9CLOT[ribosomalproteinuS5]-alanineN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16180PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	545.307373046875	2	544.800946	1087.58734	-0.59068	-0.00032181	1.186	0.00064616	0.59536	0.00032435	544.8007522381895	53.726	0.6574	53.726	53.432	54.089	0					45	15	3	0	0	0	0.28934	1	4314	4314		64.207	2.0999	1	12615000			22756	35097	18593	18616	25230	25230					0.04704806780819126
KELTIGSKL	9	Unmodified	_KELTIGSKL_					0	0	0		ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	MULTI-MSMS	OvCa99_classI_Rep5	1	494.80706787109375	2	494.8055	987.596446	-0.74036	-0.00036634	0.40944	0.00020259	-0.33093	-0.00016374	494.8056052058247	59.174	1.843	59.174	58.973	60.816	0					97	46	4	0	0	0	0.015737	3	5099	5069;5099;5132		152.06	21.416	1	23995000			22757	8767	18594	18617	25231;25232;25233	25232					0.10215200137145075
KELTIGSKL	9	Unmodified	_KELTIGSKL_					0	0	0		ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	MULTI-MSMS	OvCa9_classI_Rep2	2	494.8052673339844	2	494.8055	987.596446	-1.5045	-0.00074442	1.3322	0.0006592	-0.17223	-8.5218E-05	494.80604638472215	63.034	1.9428	60.289	59.795	61.738	-2.7444					83	36	5	0	0	0	0.0093048	7	4739	4739;4744;4750;4756;4763;4769;4777		172.25	23.577	1	903690			22758	8767	18594	18617	25234;25235;25236;25237;25238;25239;25240	25234					0.10215200137145075
KELTIGSKL	9	Unmodified	_KELTIGSKL_					0	0	0		ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.8062438964844	2	494.8055	987.596446	0.019626	9.7113E-06	-0.84402	-0.00041763	-0.8244	-0.00040792	494.80497605123855	63.893	1.4058	60.418	60.156	61.562	-3.475					71	28	4	0	0	0	0.011355	2	4515	4515;4527		164.46	26.163	1	1492500			22759	8767	18594	18617	25241;25242	25241					0.10215200137145075
KELTVVVLE	9	Unmodified	_KELTVVVLE_					0	0	0			REV__tr|A0A7D6VS19|A0A7D6VS19_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_14255PE=4SV=1	REV__tr|A0A7D6VS19|A0A7D6VS19_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_14255PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.3126831054688	2	515.313158	1028.61176	0.67052	0.00034553	-3.9395	-0.0020301	-3.269	-0.0016846	515.3111559710834	35.314	1.6978	32.465	32.19	33.887	-2.849					108	33	5	0	0	0	0.46356	1	1203	1203		45.972	6.7194	1	2437400	+		22760	31461	18595	18618	25243	25243					0.098600669343341
KELVAHLR	8	Unmodified	_KELVAHLR_					0	0	0		nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2;ENSG00000130640|ENST00000252936|TUBGCP2;nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	nc|ENSG00000130640|Q9BSJ2-3|TUBGCP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.8009033203125	2	483.298176	964.581799	0.10853	5.2451E-05	-0.65738	-0.00031771	-0.54886	-0.00026526	483.29762094324343	70.784	1.1382	70.784	70.369	71.507	0					62	28	3	0	0	0	0.028476	1	6788	6788		23.042	0	1	1432400			22761	3998	18596	18619	25244	25244					0.09809172779648634
KELVLLLL	8	Unmodified	_KELVLLLL_					0	0	0		ENST00000558791.5_1_15:44719859-44751301:+|nuORF	ENST00000558791.5_1_15:44719859-44751301:+|nuORF	ENST00000558791.5_1_15:44719859-44751301:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	470.8123474121094	2	470.825704	939.636855	0.84525	0.00039797	-1.1284	-0.00053129	-0.28318	-0.00013333	470.8251054489699	66.074	0.29748	63.378	63.269	63.567	-2.6958					8	5	2	0	0	0	0.028476	1	5109	5109		8.8223	0	1	8784.8			22762	13705	18597	18620	25245	25245					0.16462166527560385
KELVLLLL	8	Unmodified	_KELVLLLL_					0	0	0		ENST00000558791.5_1_15:44719859-44751301:+|nuORF	ENST00000558791.5_1_15:44719859-44751301:+|nuORF	ENST00000558791.5_1_15:44719859-44751301:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	470.825704	939.636855	0.77391	0.00036438	5.8727	0.002765	6.6466	0.0031294	470.8285055697716	66.957	0.44199	63.467	63.148	63.59	-3.4902	0.044529	0.0041628	NaN	42.474	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21732			22763	13705	18597	18620							0.16462166527560385
KELVTLRKL	9	Unmodified	_KELVTLRKL_					0	0	0			REV__ENSG00000103740|ENST00000258873|ACSBG1	REV__ENSG00000103740|ENST00000258873|ACSBG1	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.3638916015625	2	550.363516	1098.71248	0.11934	6.5678E-05	-0.74195	-0.00040834	-0.62262	-0.00034267	550.3629856001154	61.02	1.354	57.59	57.244	58.598	-3.43					63	27	3	0	0	0	0.1149	1	4162	4162		93.143	0	1	303240	+		22764	17633	18598	18621	25246	25246					0.16707143707867544
KELVTLRKL	9	Unmodified	_KELVTLRKL_					0	0	0			REV__ENSG00000103740|ENST00000258873|ACSBG1	REV__ENSG00000103740|ENST00000258873|ACSBG1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	550.363516	1098.71248	-0.15024	-8.2685E-05	-0.12902	-7.1007E-05	-0.27926	-0.00015369	550.3633174400601	60.033	1.2567	57.263	56.933	58.19	-2.7702	-0.16358	0.00027307	NaN	93.143	68	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	256480	+		22765	17633	18598	18621							0.16707143707867544
KELVTLRKL	9	Unmodified	_KELVTLRKL_					0	0	0			REV__ENSG00000103740|ENST00000258873|ACSBG1	REV__ENSG00000103740|ENST00000258873|ACSBG1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	550.363516	1098.71248	0.11934	6.5678E-05	-0.74195	-0.00040834	-0.62262	-0.00034267	550.3629856001154	61.02	1.354	57.59	57.244	58.598	-3.43	0.16358	-0.0004016	NaN	93.143	63	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	303240	+		22766	17633	18598	18621							0.16707143707867544
KELVVQIADV	10	Unmodified	_KELVVQIADV_					0	0	0		nc|ENSG00000165810|Q6UXG8-2|BTNL9;nc|ENSG00000165810|Q6UXG8-3|BTNL9;ENSG00000165810|ENST00000327705|BTNL9	nc|ENSG00000165810|Q6UXG8-2|BTNL9	nc|ENSG00000165810|Q6UXG8-2|BTNL9	MULTI-MSMS	OvCa99_classI_Rep5	1	557.3329467773438	2	557.329339	1112.64412	2.3083	0.0012865	-0.55582	-0.00030978	1.7525	0.00097672	557.3290070063944	78.637	0.61649	78.637	78.294	78.911	0					24	13	2	0	0	0	0.50873	1	7998	7998		53.089	6.6322	1	805390			22767	6602	18599	18622	25247	25247					0.0923085433732922
KELWDVLL	8	Unmodified	_KELWDVLL_					0	0	0		nc|ENSG00000197121|Q75T13-2|PGAP1;ENSG00000197121|ENST00000354764|PGAP1	nc|ENSG00000197121|Q75T13-2|PGAP1	nc|ENSG00000197121|Q75T13-2|PGAP1	MULTI-MSMS	OvCa9_classI_Rep2	2	508.2906188964844	2	508.294768	1014.57498	-0.83136	-0.00042257	-3.4537	-0.0017555	-4.2851	-0.0021781	508.2928265703731	115.58	1.632	115.47	114.95	116.58	-0.11777					68	32	4	0	0	0	0.61436	1	11015	11015		60.972	2.19	1	251420			22768	8679	18600	18623	25248	25248					0.06827815108408686
KELWFEVVI	9	Unmodified	_KELWFEVVI_					0	0	0			REV__nc|ENSG00000131059|Q9BQP9-2|BPIFA3	REV__nc|ENSG00000131059|Q9BQP9-2|BPIFA3	MULTI-MSMS	OvCa99_classI_Rep5	1	581.8272094726562	2	581.828975	1161.6434	1.2644	0.00073566	-4.3969	-0.0025582	-3.1325	-0.0018226	581.8262455870076	127.42	0.9539	127.42	127.23	128.18	0					38	20	3	0	0	0	0.59259	1	14750	14750		32.812	2.4947	1	465720	+		22769	18995	18601	18624	25249	25249					0.0690405968828145
KELWQRVS	8	Unmodified	_KELWQRVS_					0	0	0		nc|ENSG00000214655|A7E2V4-4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4-5|ZSWIM8;VCL-KIAA0913|3|fusion;VCL-KIAA0913|1|fusion;ENST00000433366.6_1_10:75557251-75561274:+|nuORF	nc|ENSG00000214655|A7E2V4-4|ZSWIM8	nc|ENSG00000214655|A7E2V4-4|ZSWIM8	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.2940673828125	2	523.293091	1044.57163	-0.84528	-0.00044233	-1.8589	-0.00097277	-2.7042	-0.0014151	523.2914501614295	65.301	1.8444	61.816	61.358	63.202	-3.4854					92	37	5	0	0	0	0.38598	1	4727	4727		90.777	3.0224	1	2760200			22770	9177	18602	18625	25250	25250					0.05112565054423612
KELYGKDV	8	Unmodified	_KELYGKDV_					0	0	0		tr|A0A7D6VXC7|A0A7D6VXC7_9CLOTPyridoxamine5'-phosphateoxidasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07980PE=4SV=1	tr|A0A7D6VXC7|A0A7D6VXC7_9CLOTPyridoxamine5'-phosphateoxidasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07980PE=4SV=1	tr|A0A7D6VXC7|A0A7D6VXC7_9CLOTPyridoxamine5'-phosphateoxidasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07980PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.2619323730469	2	476.260925	950.507297	0.38213	0.00018199	-0.6853	-0.00032638	-0.30317	-0.00014439	476.260430008941	47.271	1.5227	44.199	43.86	45.383	-3.0724					62	29	4	0	0	0	0.26545	1	2535	2535		113.41	5.3241	1	531410			22771	35274	18603	18626	25251	25251					0.03006365177623138
KELYGKDV	8	Unmodified	_KELYGKDV_					0	0	0		tr|A0A7D6VXC7|A0A7D6VXC7_9CLOTPyridoxamine5'-phosphateoxidasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07980PE=4SV=1	tr|A0A7D6VXC7|A0A7D6VXC7_9CLOTPyridoxamine5'-phosphateoxidasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07980PE=4SV=1	tr|A0A7D6VXC7|A0A7D6VXC7_9CLOTPyridoxamine5'-phosphateoxidasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07980PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	476.260925	950.507297	-0.62719	-0.00029871	0.39406	0.00018768	-0.23313	-0.00011103	476.26095177966806	46.877	1.1897	44.167	43.844	45.034	-2.7097	-0.015874	0.0005305	NaN	113.41	48	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128360			22772	35274	18603	18626							0.03006365177623138
KEMEEKISNL	10	Unmodified	_KEMEEKISNL_					0	0	0		nc|ENSG00000039560|Q9P0K7-4|RAI14;nc|ENSG00000039560|Q9P0K7-3|RAI14;ENSG00000039560|ENST00000265109|RAI14;nc|ENSG00000039560|Q9P0K7-2|RAI14	nc|ENSG00000039560|Q9P0K7-4|RAI14	nc|ENSG00000039560|Q9P0K7-4|RAI14	MULTI-MSMS	OvCa99_classI_Rep5	1	610.8147583007812	2	610.813196	1219.61184	0.15022	9.1758E-05	-0.36618	-0.00022367	-0.21596	-0.00013191	610.8127493369243	56.767	0.72603	56.767	56.538	57.264	0					42	16	4	0	0	0	0.012998	1	4729	4729		156.16	54.701	1	1856100			22773	1107	18604	18627	25252	25252					0.010816988720307563
KEMEHLLTVLI	11	Unmodified	_KEMEHLLTVLI_					0	0	0			REV__tr|A0A7D6ZZC4|A0A7D6ZZC4_9CLOTAcetyl-CoAacetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19525PE=3SV=1	REV__tr|A0A7D6ZZC4|A0A7D6ZZC4_9CLOTAcetyl-CoAacetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19525PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.6031188964844	3	442.588096	1324.74246	-1.2714	-0.00056269	-3.9836	-0.0017631	-5.2549	-0.0023258	442.58603402176993	50.752	0.86952	47.579	47.153	48.022	-3.1734					28	16	3	0	0	0	0.025714	1	2896	2896		31.634	0	1	20762	+		22774	32405	18605	18628	25253	25253					0.09307714590863725
KEMFATMSKL	10	Unmodified	_KEMFATMSKL_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;SYNE1|p.A5284Rfs*31|1|0.11|ENSG00000131018|chr6:152323546-152323547|-/C|frameshift_variant;SYNE1|p.T4511Lfs*10|1|0.03|ENSG00000131018|chr6:152331155-152331155|G/-|frameshift_variant;SYNE1|p.R3674Tfs*53|1|0.12|ENSG00000131018|chr6:152353650-152353651|-/ATAATTGCTTCAAAAATTTGAG|frameshift_variant;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;nc|ENSG00000131018|Q8NF91-6|SYNE1;SYNE1|p.V2560Dfs*2|1|0.09|ENSG00000131018|chr6:152395549-152395550|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-5|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	OvCa99_classI_Rep5	1	593.3060302734375	2	593.303952	1184.59335	-0.22618	-0.0001342	-0.13239	-7.855E-05	-0.35858	-0.00021275	593.3038280631451	68.506	1.1998	68.506	68.233	69.433	0					69	28	3	0	0	0	0.45953	2	6451	6451;6511		59.931	7.1506	1	18268000			22775	4036	18606	18629	25254;25255	25254					0.008438656964699476
KEMIKIPMPE	10	Unmodified	_KEMIKIPMPE_					0	0	0		ENSG00000198964|ENST00000361781|SGMS1;SGMS1|p.L256Rfs*4|1|0.16|ENSG00000198964|chr10:50311390-50311390|A/-|frameshift_variant	ENSG00000198964|ENST00000361781|SGMS1	ENSG00000198964|ENST00000361781|SGMS1	MULTI-SECPEP	OvCa9_classI_Rep2	2	608.297607421875	2	608.327427	1214.6403	-1.0167	-0.00061848	3.957	0.0024072	2.9403	0.0017887	608.3295448696039	57.901	1.3003	55.109	54.477	55.777	-2.792					44	25	3	0	0	0	0.026819	1	4198	4198		7.8045	0	1	38989			22776	8919	18607	18630	25256	25256					0.0415672524763977
KEMLAVRIW	9	Unmodified	_KEMLAVRIW_					0	0	0			REV__nc|ENSG00000105784|Q96NL0-2|RUNDC3B	REV__nc|ENSG00000105784|Q96NL0-2|RUNDC3B	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.34033203125	2	573.328619	1144.64269	-0.98009	-0.00056191	2.7401	0.001571	1.76	0.0010091	573.3300731139313	34.951	0.42588	34.951	34.772	35.198	0					21	8	4	0	0	0	0.027462	1	1757	1757		17.365	0	1	366970	+		22777	17758	18608	18631	25257	25257					0.0761494176758788
KEMLPHVGV	9	Unmodified	_KEMLPHVGV_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.75982666015625	2	505.278595	1008.54264	-0.22398	-0.00011317	0.98906	0.00049975	0.76508	0.00038658	505.27878464856525	71.273	0.59475	71.273	70.994	71.589	0					29	14	3	0	0	0	0.027433	1	6882	6882		57.811	23.639	1	958170			22778	1141	18609	18632	25258	25258					0.03870704433791161
KEMQPTHPIRL	11	Unmodified	_KEMQPTHPIRL_					0	0	0		ENSG00000134308|ENST00000238081|YWHAQ;ENST00000479421.5_2_20:43531717-43535076:+|nuORF;nc|ENSG00000164924|P63104-2|YWHAZ;ENST00000480304.5_1_8:101936173-101961117:-|nuORF;nc|ENSG00000166913|P31946-2|YWHAB;ENSG00000164924|ENST00000395958|YWHAZ;ENSG00000166913|ENST00000353703|YWHAB;ENST00000517727.5_1_8:101936341-101962760:-|nuORF	ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	MULTI-MSMS	OvCa99_classI_Rep5	1	450.5844421386719	3	450.583456	1348.72854	-0.12491	-5.6284E-05	0.15555	7.009E-05	0.030641	1.3806E-05	450.5834131440586	52.19	0.7846	52.19	51.912	52.697	0					46	17	4	0	0	0	0.22001	1	4076	4076		77.288	33.869	1	1877200			22779	4278	18610	18633	25259	25259					0.0681248188243444
KEMVEYYQL	9	Unmodified	_KEMVEYYQL_					0	0	0			REV__ENSG00000023516|ENST00000025301|AKAP11	REV__ENSG00000023516|ENST00000025301|AKAP11	MULTI-MSMS	OvCa99_classI_Rep5	1	601.7907104492188	2	601.791732	1201.56891	1.7601	0.0010592	-2.7427	-0.0016505	-0.98257	-0.0005913	601.7898069129209	130.24	0.80995	130.24	129.91	130.72	0					43	16	4	0	0	0	0.40667	1	15126	15126		51.335	0.14276	1	631010	+		22780	16558	18611	18634	25260	25260					-0.023810711853911926
KENDFDRLVL	10	Unmodified	_KENDFDRLVL_					0	0	0		ENST00000598969.5_1_19:19010490-19016602:-|nuORF;ENST00000595984.5_1_19:19010490-19010792:-|nuORF;nc|ENSG00000105669|O14579-3|COPE;nc|ENSG00000105669|O14579-2|COPE;ENSG00000105669|ENST00000262812|COPE	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	624.8341064453125	2	624.832777	1247.651	2.0661	0.001291	-0.032448	-2.0274E-05	2.0336	0.0012707	624.832672042899	90.537	0.6685	90.537	90.269	90.938	0					46	16	4	0	0	0	0.084482	1	9697	9697		117.53	34.775	1	4839700			22781	14202	18612	18635	25261	25261					0.03708167217905611
KENDFDRLVL	10	Unmodified	_KENDFDRLVL_					0	0	0		ENST00000598969.5_1_19:19010490-19016602:-|nuORF;ENST00000595984.5_1_19:19010490-19010792:-|nuORF;nc|ENSG00000105669|O14579-3|COPE;nc|ENSG00000105669|O14579-2|COPE;ENSG00000105669|ENST00000262812|COPE	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	624.8323974609375	2	624.832777	1247.651	-0.54937	-0.00034327	0.70521	0.00044064	0.15583	9.7369E-05	624.8331403938798	92.883	1.8991	91.715	91.394	93.293	-1.168					117	36	5	0	0	0	0.083353	9	8267	8267;8272;8278;8285;8291;8297;8303;8310;8316		117.81	32.65	1	828600			22782	14202	18612	18635	25262;25263;25264;25265;25266;25267;25268;25269;25270	25262					0.03708167217905611
KENDFDRLVL	10	Unmodified	_KENDFDRLVL_					0	0	0		ENST00000598969.5_1_19:19010490-19016602:-|nuORF;ENST00000595984.5_1_19:19010490-19010792:-|nuORF;nc|ENSG00000105669|O14579-3|COPE;nc|ENSG00000105669|O14579-2|COPE;ENSG00000105669|ENST00000262812|COPE	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	624.8341674804688	2	624.832777	1247.651	-0.22894	-0.00014305	0.12143	7.5875E-05	-0.10751	-6.7177E-05	624.832799150308	93.664	2.1214	91.702	91.378	93.499	-1.9617					124	41	5	0	0	0	0.083353	5	6011	5999;6005;6011;6018;6031		117.81	27.731	1	1089200			22783	14202	18612	18635	25271;25272;25273;25274;25275	25273					0.03708167217905611
KENDFDRLVL	10	Unmodified	_KENDFDRLVL_					0	0	0		ENST00000598969.5_1_19:19010490-19016602:-|nuORF;ENST00000595984.5_1_19:19010490-19010792:-|nuORF;nc|ENSG00000105669|O14579-3|COPE;nc|ENSG00000105669|O14579-2|COPE;ENSG00000105669|ENST00000262812|COPE	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	624.8340454101562	2	624.832777	1247.651	-0.33712	-0.00021064	0.23328	0.00014576	-0.10384	-6.4883E-05	624.8328150193545	94.259	1.9876	91.79	91.478	93.465	-2.4685					116	39	4	0	0	0	0.10592	4	8240	8240;8252;8265;8291		112.11	18.964	1	870350			22784	14202	18612	18635	25276;25277;25278;25279	25276					0.03708167217905611
KENEDKAVEI	10	Unmodified	_KENEDKAVEI_					0	0	0		tr|A0A553SLK7|A0A553SLK7_NIACINon-homologousendjoiningproteinKuOS=NialliacirculansOX=1397GN=kuPE=3SV=1	tr|A0A553SLK7|A0A553SLK7_NIACINon-homologousendjoiningproteinKuOS=NialliacirculansOX=1397GN=kuPE=3SV=1	tr|A0A553SLK7|A0A553SLK7_NIACINon-homologousendjoiningproteinKuOS=NialliacirculansOX=1397GN=kuPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.8259887695312	2	587.801143	1173.58773	0.82785	0.00048661	1.9778	0.0011626	2.8057	0.0016492	588.3036992214015	153.65	0.13821	153.65	153.55	153.69	0					4	2	2	0	0	0	0.027088	1	18004	18004		14.137	3.0404	1	18522			22785	33735	18613	18636	25280	25280					0.007881817099814725
KENFNTVEH	9	Unmodified	_KENFNTVEH_					0	0	0		nc|ENSG00000158055|Q8TE85-4|GRHL3;nc|ENSG00000158055|Q8TE85-3|GRHL3;ENSG00000158055|ENST00000361548|GRHL3;nc|ENSG00000158055|Q8TE85-2|GRHL3;nc|ENSG00000158055|Q8TE85|GRHL3	nc|ENSG00000158055|Q8TE85-4|GRHL3	nc|ENSG00000158055|Q8TE85-4|GRHL3	MULTI-MSMS	OvCa99_classI_Rep5	1	559.275634765625	2	559.26727	1116.51999	-0.25427	-0.0001422	2.9849	0.0016694	2.7306	0.0015272	559.2688141503189	37.136	3.4912	37.136	36.662	40.154	0					134	77	3	0	0	0	0.51865	1	2167	2167		40.778	1.5253	1	738250			22786	5928	18614	18637	25281	25281					-0.0336122343014722
KENIIKVAI	9	Unmodified	_KENIIKVAI_					0	0	0		nc|ENSG00000075856|Q15020-4|SART3;ENSG00000075856|ENST00000546815|SART3	nc|ENSG00000075856|Q15020-4|SART3	nc|ENSG00000075856|Q15020-4|SART3	MULTI-MSMS	OvCa99_classI_Rep5	1	514.330322265625	2	514.329142	1026.64373	2.3565	0.001212	0.12366	6.3604E-05	2.4802	0.0012756	514.3291255688877	75.925	0.51514	75.925	75.723	76.238	0					33	12	4	0	0	0	0.22621	1	7589	7589		71.877	0	1	2206100			22787	1544	18615	18638	25282	25282					0.13147479408144136
KENKENMLN	9	Unmodified	_KENKENMLN_					0	0	0		tr|A0A7D6VTR4|A0A7D6VTR4_9CLOTTIGR01212familyradicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22270PE=4SV=1	tr|A0A7D6VTR4|A0A7D6VTR4_9CLOTTIGR01212familyradicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22270PE=4SV=1	tr|A0A7D6VTR4|A0A7D6VTR4_9CLOTTIGR01212familyradicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22270PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	560.2755737304688	2	560.27678	1118.53901	0.059706	3.3452E-05	-3.0354	-0.0017007	-2.9757	-0.0016672	560.2749568783789	106.86	2.1744	105.6	105.27	107.44	-1.267					110	42	3	0	0	0	0.53483	1	7595	7595		39.253	2.0937	1	1807000			22788	35134	18616	18639	25283	25283					-0.015520101307174627
KENKMKLVFA	10	Unmodified	_KENKMKLVFA_					0	0	0			REV__ENST00000356978.8_1_14:90871354-90871483:+|nuORF	REV__ENST00000356978.8_1_14:90871354-90871483:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	403.5867614746094	3	403.233765	1206.67946	2.6046	0.0010503	-1.2234	-0.00049332	1.3812	0.00055694	403.2332357791545	62.471	0.69588	59.437	59.009	59.705	-3.0339					21	14	2	0	0	0	0.027233	1	2275	2275		27.047	4.4677	1	14098	+		22789	24775	18617	18640	25284	25284					0.08439193593494565
KENKMKLVFA	10	Unmodified	_KENKMKLVFA_					0	0	0			REV__ENST00000356978.8_1_14:90871354-90871483:+|nuORF	REV__ENST00000356978.8_1_14:90871354-90871483:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	403.233765	1206.67946	1.5929	0.0006423	-1.2303	-0.00049611	0.36252	0.00014618	403.23310179724257	62.857	1.5524	59.399	58.429	59.981	-3.4577	-0.018805	-3.3415E-06	NaN	20.837	45	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21931	+		22790	24775	18617	18640							0.08439193593494565
KENLEKTRHTL	11	Unmodified	_KENLEKTRHTL_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	OvCa99_classI_Rep5	1	456.9244384765625	3	456.924647	1367.75211	0.1988	9.0838E-05	-1.0406	-0.00047546	-0.84177	-0.00038463	456.92425145866184	31.584	1.3875	31.584	31.361	32.748	0					79	27	5	0	0	0	0.41331	1	1306	1306		60.167	19.087	1	5482000			22791	7686	18618	18641	25285	25285					0.08294618920626817
KENLNKAWPDP	11	Unmodified	_KENLNKAWPDP_					0	0	0			REV__nc|ENSG00000091513|P02787|TF	REV__nc|ENSG00000091513|P02787|TF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	437.2623291015625	3	437.894577	1310.6619	-1.095	-0.0004795	-0.18147	-7.9465E-05	-1.2765	-0.00055897	437.8938271161058	50.595	0.61806	47.422	47.153	47.771	-3.1734					26	11	4	0	0	0	0.02539	1	2905	2905		60.167	30.616	1	18377	+		22792	17251	18619	18642	25286	25286					0.01899569592160333
KENNWHDV	8	Unmodified	_KENNWHDV_					0	0	0			REV__ENSG00000158109|ENST00000378344|TPRG1L	REV__ENSG00000158109|ENST00000378344|TPRG1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.2609252929688	2	521.241055	1040.46756	0.073549	3.8337E-05	-3.0217	-0.001575	-2.9482	-0.0015367	521.7408627933046	140.93	0.24928	140.93	140.73	140.98	0					7	4	2	0	0	0	0.028476	1	16460	16460		53.351	10.955	1	13444	+		22793	20549	18620	18643	25287	25287					-0.051057617730975835
KENPLQFKF	9	Unmodified	_KENPLQFKF_					0	0	0		ENSG00000092820|ENST00000367075|EZR;nc|ENSG00000137710|P35241-3|RDX;EZR-PARP3|1|fusion	ENSG00000092820|ENST00000367075|EZR;EZR-PARP3|1|fusion	EZR-PARP3|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8176879882812	2	575.816399	1149.61824	-1.3948	-0.00080317	1.2575	0.00072407	-0.13736	-7.9096E-05	575.817122432931	90.761	1.4215	88.68	88.31	89.732	-2.0805					93	27	5	0	0	0	0.10502	1	5647	5647		95.815	16.103	1	927360			22794	14317;1900	18621	18644	25288	25288					0.04942004885697315
KENPLQFKF	9	Unmodified	_KENPLQFKF_					0	0	0		ENSG00000092820|ENST00000367075|EZR;nc|ENSG00000137710|P35241-3|RDX;EZR-PARP3|1|fusion	ENSG00000092820|ENST00000367075|EZR;EZR-PARP3|1|fusion	EZR-PARP3|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.819091796875	2	575.816399	1149.61824	-0.82252	-0.00047362	0.5538	0.00031889	-0.26871	-0.00015473	575.8167100751336	91.174	1.5268	88.632	88.244	89.771	-2.5425					88	29	4	0	0	0	0.066102	1	7873	7873		109.48	29.766	1	761400			22795	14317;1900	18621	18644	25289	25289					0.04942004885697315
KENSAPVKL	9	Unmodified	_KENSAPVKL_					0	0	0		MTHFD1-CASK|1|fusion;MTHFD1-CASK|3|fusion;MTHFD1-CASK|2|fusion;ENSG00000147044|ENST00000378163|CASK;nc|ENSG00000147044|O14936-2|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-3|CASK;CASK|p.A814Kfs*50|1|0.31|ENSG00000147044|chrX:41531075-41531088|TCCCATACATCGCA/-|frameshift_variant;CASK|p.V190Gfs*39|1|0.04|ENSG00000147044|chrX:41665416-41665417|-/C|frameshift_variant;CASK|p.E189Dfs*45|1|0.04|ENSG00000147044|chrX:41665418-41665419|-/TAGTTTGAAGTATAGA|frameshift_variant	MTHFD1-CASK|1|fusion	MTHFD1-CASK|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	493.28729248046875	2	493.287474	984.560395	-0.91428	-0.000451	0.4861	0.00023979	-0.42818	-0.00021122	493.2874793198736	43.496	0.85282	43.496	43.185	44.038	0					49	19	5	0	0	0	0.033166	1	2869	2869		132.76	36.567	1	1495600			22796	14842	18622	18645	25290	25290					0.06749742960278127
KENSAPVKL	9	Unmodified	_KENSAPVKL_					0	0	0		MTHFD1-CASK|1|fusion;MTHFD1-CASK|3|fusion;MTHFD1-CASK|2|fusion;ENSG00000147044|ENST00000378163|CASK;nc|ENSG00000147044|O14936-2|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-3|CASK;CASK|p.A814Kfs*50|1|0.31|ENSG00000147044|chrX:41531075-41531088|TCCCATACATCGCA/-|frameshift_variant;CASK|p.V190Gfs*39|1|0.04|ENSG00000147044|chrX:41665416-41665417|-/C|frameshift_variant;CASK|p.E189Dfs*45|1|0.04|ENSG00000147044|chrX:41665418-41665419|-/TAGTTTGAAGTATAGA|frameshift_variant	MTHFD1-CASK|1|fusion	MTHFD1-CASK|1|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	493.287474	984.560395	0.11811	5.8264E-05	-0.18592	-9.1712E-05	-0.067804	-3.3447E-05	493.2869811687445	46.39	0.49584	43.68	43.497	43.993	-2.7097	0.095611	-0.00046806	NaN	132.76	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28400			22797	14842	18622	18645							0.06749742960278127
KENSAPVKL	9	Unmodified	_KENSAPVKL_					0	0	0		MTHFD1-CASK|1|fusion;MTHFD1-CASK|3|fusion;MTHFD1-CASK|2|fusion;ENSG00000147044|ENST00000378163|CASK;nc|ENSG00000147044|O14936-2|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-3|CASK;CASK|p.A814Kfs*50|1|0.31|ENSG00000147044|chrX:41531075-41531088|TCCCATACATCGCA/-|frameshift_variant;CASK|p.V190Gfs*39|1|0.04|ENSG00000147044|chrX:41665416-41665417|-/C|frameshift_variant;CASK|p.E189Dfs*45|1|0.04|ENSG00000147044|chrX:41665418-41665419|-/TAGTTTGAAGTATAGA|frameshift_variant	MTHFD1-CASK|1|fusion	MTHFD1-CASK|1|fusion	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	493.287474	984.560395	-0.21753	-0.0001073	0.005038	2.4852E-06	-0.21249	-0.00010482	493.2869189386493	46.65	0.71967	43.578	43.294	44.014	-3.0724	-0.0068584	-0.00027966	NaN	132.76	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141400			22798	14842	18622	18645							0.06749742960278127
KENSPEKFAL	10	Unmodified	_KENSPEKFAL_					0	0	0		nc|ENSG00000099956|Q12824-2|SMARCB1;ENSG00000099956|ENST00000644036|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	MULTI-MSMS	OvCa99_classI_Rep5	1	581.8102416992188	2	581.808771	1161.60299	-0.56706	-0.00032992	0.14072	8.1869E-05	-0.42635	-0.00024805	581.8086958484402	60.336	0.64927	60.336	60.039	60.688	0					45	15	4	0	0	0	0.0030581	1	5263	5263		168.26	67.006	1	3944000			22799	1987	18623	18646	25291	25291					0.028650932978507626
KENSPEKFAL	10	Unmodified	_KENSPEKFAL_					0	0	0		nc|ENSG00000099956|Q12824-2|SMARCB1;ENSG00000099956|ENST00000644036|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	581.808771	1161.60299	0.3238	0.00018839	0.43943	0.00025566	0.76323	0.00044405	581.8098279847264	63.545	0.28632	60.511	60.417	60.703	-3.0339	0.08786	0.00033212	NaN	168.26	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7203.9			22800	1987	18623	18646							0.028650932978507626
KENVPISRF	9	Unmodified	_KENVPISRF_					0	0	0			REV__ENSG00000164105|ENST00000296504|SAP30	REV__ENSG00000164105|ENST00000296504|SAP30	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3069458007812	2	545.306198	1088.59784	-1.3311	-0.00072584	0.91355	0.00049817	-0.41751	-0.00022767	545.3065917023431	38.797	1.0385	36.087	35.865	36.904	-2.7097					40	20	3	0	0	0	0.44568	1	1842	1842		47.657	0	1	204170	+		22801	20942	18624	18647	25292	25292					0.057088342259021374
KENVQSQER	9	Unmodified	_KENVQSQER_					0	0	0		nc|ENSG00000069869|P46934-3|NEDD4;nc|ENSG00000069869|P46934-2|NEDD4;nc|ENSG00000069869|P46934|NEDD4	nc|ENSG00000069869|P46934-3|NEDD4	nc|ENSG00000069869|P46934-3|NEDD4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.3353881835938	2	559.283451	1116.55235	0.1998	0.00011174	-2.2469	-0.0012567	-2.0471	-0.0011449	559.2821071366545	106.39	0.45551	104.37	104.16	104.61	-2.0161					11	8	2	0	0	0	0.027137	1	9680	9680		77.318	0	1	48954			22802	14888	18625	18648	25293	25293					-0.001264360271534315
KEPAGRLI	8	Unmodified	_KEPAGRLI_					0	0	0		ENST00000370489.4_1_10:101419301-101419631:+|nuORF	ENST00000370489.4_1_10:101419301-101419631:+|nuORF	ENST00000370489.4_1_10:101419301-101419631:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.2099304199219	2	442.271627	882.528701	0.4213	0.00018633	-0.98754	-0.00043676	-0.56624	-0.00025043	442.27110416532827	66.277	0.39311	66.277	66.059	66.452	0					16	9	2	0	0	0	0.028476	1	6143	6143		42.396	3.59	1	272880			22803	10927	18626	18649	25294	25294					0.08273794996978268
KEPDVSEEL	9	Unmodified	_KEPDVSEEL_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;ENSG00000173193|ENST00000474629|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	OvCa99_classI_Rep5	1	523.2578735351562	2	523.256037	1044.49752	-1.0109	-0.00052895	0.65311	0.00034174	-0.35777	-0.00018721	523.2562663697743	68.022	1.2871	68.022	67.528	68.815	0					108	31	5	0	0	0	0.012051	3	6384	6384;6414;6444		162.25	54.165	1	10469000			22804	7356	18627	18650	25295;25296;25297	25295					-0.022948676184114447
KEPDVSEEL	9	Unmodified	_KEPDVSEEL_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;ENSG00000173193|ENST00000474629|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MATCH	OvCa9_classI_Rep2	2		2	523.256037	1044.49752	0.47796	0.00025009	-0.70011	-0.00036634	-0.22216	-0.00011624	523.2555604115842	70.561	1.1732	67.99	67.462	68.635	-2.5707	0.0028272	-0.0012613	NaN	162.25	38	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79746			22805	7356	18627	18650							-0.022948676184114447
KEPDVSEEL	9	Unmodified	_KEPDVSEEL_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;ENSG00000173193|ENST00000474629|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	523.256037	1044.49752	-1.3456	-0.00070412	0.98326	0.0005145	-0.36239	-0.00018962	523.2564790863669	71.406	1.3652	67.95	67.486	68.851	-3.4563	-0.037421	0.00050038	NaN	162.25	52	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	356830			22806	7356	18627	18650							-0.022948676184114447
KEPEINTTL	9	Unmodified	_KEPEINTTL_					0	0	0		ENSG00000165487|ENST00000382374|MICU2;ENST00000480341.5_1_13:22077016-22089705:-|nuORF	ENSG00000165487|ENST00000382374|MICU2	ENSG00000165487|ENST00000382374|MICU2	MULTI-MSMS	OvCa99_classI_Rep5	1	522.7837524414062	2	522.782222	1043.54989	-0.36832	-0.00019255	-0.027371	-1.4309E-05	-0.39569	-0.00020686	522.7822418564257	72.895	1.494	72.895	72.374	73.868	0					58	37	2	0	0	0	0.011767	2	7122	7122;7152		163.15	67.336	1	11489000			22807	6566	18628	18651	25298;25299	25298					0.029857155152058112
KEPEINTTL	9	Unmodified	_KEPEINTTL_					0	0	0		ENSG00000165487|ENST00000382374|MICU2;ENST00000480341.5_1_13:22077016-22089705:-|nuORF	ENSG00000165487|ENST00000382374|MICU2	ENSG00000165487|ENST00000382374|MICU2	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.7853393554688	2	522.782222	1043.54989	-0.27382	-0.00014315	-0.77974	-0.00040763	-1.0536	-0.00055078	522.7816778535876	75.489	1.4852	72.55	72.065	73.55	-2.9389					57	30	3	0	0	0	0.084918	2	5949	5949;5960		101.25	12.529	1	553610			22808	6566	18628	18651	25300;25301	25300					0.029857155152058112
KEPIIVNL	8	Unmodified	_KEPIIVNL_					0	0	0			REV__nc|ENSG00000196218|P21817-3|RYR1	REV__nc|ENSG00000196218|P21817-3|RYR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.26251220703125	2	463.289485	924.564418	-0.57505	-0.00026641	0.3145	0.0001457	-0.26055	-0.00012071	463.2893454147554	79.098	1.2417	76.346	76.085	77.326	-2.7514					39	25	2	0	0	0	0.028476	1	6455	6455		35.618	0	1	222310	+		22809	22801	18629	18652	25302	25302					0.09911832453997249
KEPKHHLKP	9	Unmodified	_KEPKHHLKP_					0	0	0		ENST00000556605.5_1_14:69865991-69866072:+|nuORF	ENST00000556605.5_1_14:69865991-69866072:+|nuORF	ENST00000556605.5_1_14:69865991-69866072:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.7957763671875	2	557.330008	1112.64546	2.3204	0.0012932	-1.2877	-0.00071766	1.0327	0.00057556	557.3292654226655	85.167	0.66197	85.167	84.882	85.544	0					26	15	2	0	0	0	0.027459	1	8905	8905		44.377	9.2252	1	1775700			22810	13669	18630	18653	25303	25303					0.09364533216739801
KEPLLPVYL	9	Unmodified	_KEPLLPVYL_					0	0	0		nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-3|TUT7;ENST00000277141.10_2_9:88941382-88968129:-|nuORF;nc|ENSG00000083223|Q5VYS8-2|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.3248291015625	2	536.326068	1070.63758	-0.91686	-0.00049173	-0.58963	-0.00031623	-1.5065	-0.00080797	536.3257159788187	121.94	0.92113	120.59	120.31	121.23	-1.3479					38	17	3	0	0	0	0.50149	1	11494	11494		42.396	5.237	1	82568			22811	1689	18631	18654	25304	25304					0.10508961176606135
KEPPNGILPP	10	Unmodified	_KEPPNGILPP_					0	0	0		ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.32958984375	2	531.303124	1060.5917	1.8385	0.00097681	-3.5243	-0.0018725	-1.6858	-0.00089567	531.301741047959	79.769	1.3244	79.769	79.119	80.443	0					39	32	2	0	0	0	0.026665	1	8106	8106		51.335	8.9393	1	775540			22812	6650	18632	18655	25305	25305					0.06382315994369492
KEPPNGILPP	10	Unmodified	_KEPPNGILPP_					0	0	0		ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	531.303124	1060.5917	-1.3778	-0.00073203	3.3989	0.0018058	2.0211	0.0010738	531.3050236277559	82.7	0.48741	80.017	79.881	80.368	-2.6829	0.098654	0.0048905	NaN	47.657	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17963			22813	6650	18632	18655							0.06382315994369492
KEPRPRLF	8	Unmodified	_KEPRPRLF_					0	0	0		ENSG00000105429|ENST00000251268|MEGF8;nc|ENSG00000105429|Q7Z7M0-2|MEGF8;MEGF8|p.R1953Pfs*3|1|0.11|ENSG00000105429|chr19:42362390-42362391|-/C|frameshift_variant	ENSG00000105429|ENST00000251268|MEGF8	ENSG00000105429|ENST00000251268|MEGF8	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.7822265625	2	521.811451	1041.60835	-1.2455	-0.00064991	-0.66756	-0.00034834	-1.913	-0.00099825	521.8111057060032	59.547	0.53756	59.547	59.228	59.766	0					22	13	2	0	0	0	0.028476	1	5105	5105		45.952	10.334	1	536340			22814	2459	18633	18656	25306	25306					0.0892086167098114
KEPSGELI	8	Unmodified	_KEPSGELI_					0	0	0			REV__nc|ENSG00000124587|Q13608-2|PEX6	REV__nc|ENSG00000124587|Q13608-2|PEX6	MULTI-SECPEP	OvCa99_classI_Rep5	1	436.9341735839844	2	436.739825	871.465098	0.70526	0.00030802	-3.6278	-0.0015844	-2.9226	-0.0012764	436.7381146210166	30.468	0.34834	30.468	30.334	30.682	0					12	6	3	0	0	0	0.028476	1	1189	1189		31.955	5.1588	1	77615	+		22815	18697	18634	18657	25307	25307					0.024223897692422725
KEPSLPGLSL	10	Unmodified	_KEPSLPGLSL_					0	0	0			REV__ENST00000492431.1_1_1:109822777-109824720:-|nuORF	REV__ENST00000492431.1_1_1:109822777-109824720:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	520.803955078125	2	520.802957	1039.59136	-1.1	-0.00057286	-0.34225	-0.00017825	-1.4422	-0.00075111	520.80307646	104.59	1.1199	104.59	104.32	105.44	0					56	25	4	0	0	0	0.26424	1	11753	11753		85.161	2.4103	1	7987000	+		22816	19182	18635	18658	25308	25308					0.07314896274510829
KEPTGKPSPSA	11	Unmodified	_KEPTGKPSPSA_					0	0	0			REV__EPB41L1-C20orf152|3|fusion	REV__EPB41L1-C20orf152|3|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	549.7994384765625	2	549.793121	1097.57169	1.4423	0.00079298	3.7872	0.0020822	5.2295	0.0028752	549.795305270823	127.01	0.6253	127.01	126.73	127.36	0					22	13	2	0	0	0	0.41656	1	14692	14692		59.931	5.2084	1	975560	+		22817	28108	18636	18659	25309	25309					0.02680520263766084
KEQAIHFGEP	10	Unmodified	_KEQAIHFGEP_					0	0	0			REV__MIPEP|p.T154Qfs*13|1|0.07|ENSG00000027001|chr13:23879347-23879347|T/-|frameshift_variant	REV__MIPEP|p.T154Qfs*13|1|0.07|ENSG00000027001|chr13:23879347-23879347|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2891235351562	2	578.293288	1154.57202	-7.6021	-0.0043963	1.2846	0.00074285	-6.3176	-0.0036534	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.64697	1	13421	13421		36.447	3.6962	1	1429200	+		22818	16573	18637	18660	25310	25310					0.0009193998362206912
KEQDHFLI	8	Unmodified	_KEQDHFLI_					0	0	0		nc|ENSG00000075340|P35612-5|ADD2;nc|ENSG00000075340|P35612-6|ADD2;nc|ENSG00000075340|P35612-4|ADD2;nc|ENSG00000075340|P35612-3|ADD2;ENSG00000075340|ENST00000264436|ADD2;nc|ENSG00000075340|P35612-2|ADD2;nc|ENSG00000075340|P35612-8|ADD2;nc|ENSG00000075340|P35612-9|ADD2	nc|ENSG00000075340|P35612-5|ADD2	nc|ENSG00000075340|P35612-5|ADD2	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.7923583984375	2	515.271824	1028.5291	-0.36776	-0.00018949	1.0163	0.00052368	0.64856	0.00033418	515.2721279546644	76.98	0.98683	74.609	74.348	75.334	-2.3715					43	18	4	0	0	0	0.028476	1	4020	4020		42.396	10.441	1	106220			22819	1529	18638	18661	25311	25311					0.01597169926208153
KEQDLKEIK	9	Unmodified	_KEQDLKEIK_					0	0	0			REV__tr|A0A553SU66|A0A553SU66_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06335PE=4SV=1	REV__tr|A0A553SU66|A0A553SU66_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06335PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	565.8245849609375	2	565.824421	1129.63429	-1.6624	-0.00094061	1.3407	0.00075858	-0.32171	-0.00018203	565.8250621645125	34.497	1.3866	31.787	31.513	32.9	-2.7097					82	27	4	0	0	0	0.056671	3	1324	1309;1324;1336		114.89	15.298	1	859200	+		22820	31044	18639	18662	25312;25313;25314	25313					0.07465666331927423
KEQDLKEIK	9	Unmodified	_KEQDLKEIK_					0	0	0			REV__tr|A0A553SU66|A0A553SU66_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06335PE=4SV=1	REV__tr|A0A553SU66|A0A553SU66_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06335PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.8236694335938	2	565.824421	1129.63429	1.6596	0.00093904	-2.0536	-0.001162	-0.39402	-0.00022295	565.8229237234004	33.487	1.6381	30.699	30.359	31.997	-2.7881					114	32	6	0	0	0	0.056671	3	895	887;895;907		114.89	11.934	1	556400	+		22821	31044	18639	18662	25315;25316;25317	25316					0.07465666331927423
KEQDVEKEL	9	Unmodified	_KEQDVEKEL_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1;NFE2L1|p.L707Tfs*5|1|0.59|ENSG00000082641|chr17:48059439-48059440|-/GA|frameshift_variant	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.2811889648438	2	559.290411	1116.56627	-1.1211	-0.000627	0.96596	0.00054025	-0.1551	-8.6743E-05	559.2909360519909	49.27	1.3523	46.129	45.78	47.132	-3.1416					75	25	4	0	0	0	0.066102	1	2770	2770		109.48	10.849	1	563720			22822	1683	18640	18663	25318	25318					0.012647966812892264
KEQDVEKEL	9	Unmodified	_KEQDVEKEL_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1;NFE2L1|p.L707Tfs*5|1|0.59|ENSG00000082641|chr17:48059439-48059440|-/GA|frameshift_variant	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	559.290411	1116.56627	-0.37416	-0.00020926	-0.22565	-0.0001262	-0.5998	-0.00033546	559.29012835039	48.959	0.98904	46.198	45.929	46.918	-2.7603	0.034764	-0.00063201	NaN	109.48	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119400			22823	1683	18640	18663							0.012647966812892264
KEQELKKVD	9	Unmodified	_KEQELKKVD_					0	0	0			REV__tr|A0A553SLR6|A0A553SLR6_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_21140PE=4SV=1	REV__tr|A0A553SLR6|A0A553SLR6_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_21140PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	558.816162109375	2	558.816596	1115.61864	0.30325	0.00016946	0.12276	6.86E-05	0.42601	0.00023806	558.8161111583237	45.682	2.04	42.972	42.697	44.737	-2.7097					67	40	2	0	0	0	0.10502	2	2679	2668;2679		95.815	5.4453	1	1772600	+		22824	30258	18641	18664	25319;25320	25320					0.0654537981492922
KEQELLILN	9	Unmodified	_KEQELLILN_					0	0	0			REV__nc|ENSG00000075340|P35612-2|ADD2	REV__nc|ENSG00000075340|P35612-2|ADD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.79833984375	2	550.321514	1098.62847	2.2352	0.0012301	-0.28111	-0.0001547	1.954	0.0010754	550.3211972416273	84.313	0.49569	84.313	84.135	84.631	0					22	11	3	0	0	0	0.027402	1	8831	8831		66.429	0	1	444810	+		22825	16970	18642	18665	25321	25321					0.08310567820308279
KEQERSFR	8	Unmodified	_KEQERSFR_					0	0	0		ENSG00000213024|ENST00000352066|NUP62	ENSG00000213024|ENST00000352066|NUP62	ENSG00000213024|ENST00000352066|NUP62	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.822021484375	2	540.283254	1078.55196	-0.74236	-0.00040108	-0.50105	-0.00027071	-1.2434	-0.00067179	540.2830306663336	34.107	0.67228	34.107	33.632	34.304	0					19	13	2	0	0	0	0.028476	1	1595	1595		40.778	12.896	1	24918			22826	9112	18643	18666	25322	25322					0.01582189043665494
KEQFEEKIK	9	Unmodified	_KEQFEEKIK_					0	0	0			REV__tr|A0A7D6ZZB9|A0A7D6ZZB9_9CLOTDUF2325domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05490PE=4SV=1	REV__tr|A0A7D6ZZB9|A0A7D6ZZB9_9CLOTDUF2325domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05490PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	589.8242797851562	2	589.824421	1177.63429	-0.58318	-0.00034397	0.56274	0.00033192	-0.020434	-1.2052E-05	589.8246697135547	36.141	0.50362	36.141	35.939	36.442	0					24	10	4	0	0	0	0.046778	1	1886	1886		120.87	16.122	1	387250	+		22827	32404	18644	18667	25323	25323					0.05257666331931432
KEQGLAPLV	9	Unmodified	_KEQGLAPLV_					0	0	0		ENSG00000121068|ENST00000240328|TBX2;ENST00000477081.1_1_17:59482609-59483362:+|nuORF	ENSG00000121068|ENST00000240328|TBX2	ENSG00000121068|ENST00000240328|TBX2	MULTI-MSMS	OvCa9_classI_Rep2	2	477.7850341796875	2	477.784567	953.554582	-1.3623	-0.00065089	1.0601	0.00050652	-0.30217	-0.00014437	477.78500123500345	52.573	1.6304	49.76	49.196	50.826	-2.8129					73	32	4	0	0	0	0.42676	1	3523	3523		49.442	0	1	300580			22828	3469	18645	18668	25324	25324					0.07594644448613508
KEQIRAARRPV	11	Unmodified	_KEQIRAARRPV_					0	0	0			REV__ENST00000529244.1_1_11:65786296-65788320:-|nuORF	REV__ENST00000529244.1_1_11:65786296-65788320:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	441.93817138671875	3	441.93711	1322.7895	0.81583	0.00036055	0.32218	0.00014238	1.138	0.00050293	441.9371247652633	23.449	1.0919	23.449	23.195	24.287	0					50	21	4	0	0	0	0.72483	1	321	321		17.833	0.6664	1	145190	+		22829	27190	18646	18669	25325	25325					0.14101754976854863
KEQKDYLLT	9	Unmodified	_KEQKDYLLT_					0	0	0		ENSG00000254521|ENST00000291707|SIGLEC12	ENSG00000254521|ENST00000291707|SIGLEC12	ENSG00000254521|ENST00000291707|SIGLEC12	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.7904052734375	2	569.311146	1136.60774	-0.36212	-0.00020616	0.063543	3.6176E-05	-0.29857	-0.00016998	569.3109709682806	54.313	0.41809	54.313	54.172	54.59	0					18	9	2	0	0	0	0.027462	1	4410	4410		25.574	0	1	661440			22830	9447	18647	18670	25326	25326					0.044899774406076176
KEQKILQETL	10	Unmodified	_KEQKILQETL_					0	0	0		nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;STAT2|p.V424Dfs*116|1|0.05|ENSG00000170581|chr12:56349496-56349497|-/GAGTGGGATCTATGGATGTCTGGTAGAT|frameshift_variant;ENST00000557156.1_1_12:56748248-56748633:-|nuORF	nc|ENSG00000170581|P52630-4|STAT2	nc|ENSG00000170581|P52630-4|STAT2	MULTI-MSMS	OvCa99_classI_Rep5	1	615.3609008789062	2	615.358628	1228.7027	0.096839	5.9591E-05	-0.13878	-8.54E-05	-0.041941	-2.5809E-05	615.3584667406955	64.66	0.69746	64.66	64.375	65.072	0					43	16	4	0	0	0	0.0076777	1	5888	5888		162.64	52.516	1	2409000			22831	7120	18648	18671	25327	25327					0.09749910911818915
KEQLAEPKPVK	11	Unmodified	_KEQLAEPKPVK_					0	0	0			REV__nc|ENSG00000165186|Q96NR3-2|PTCHD1	REV__nc|ENSG00000165186|Q96NR3-2|PTCHD1	MULTI-MSMS	OvCa9_classI_Rep3	3	422.9195251464844	3	422.918722	1265.73434	-0.036263	-1.5336E-05	0.8095	0.00034235	0.77324	0.00032702	422.9190110204645	75.916	2.7671	73.545	72.861	75.628	-2.3715					169	53	5	0	0	0	0.61375	1	3861	3861		43.419	4.7044	1	908720	+		22832	21066	18649	18672	25328	25328					0.1120990366573551
KEQLCWADP	9	Unmodified	_KEQLCWADP_					0	0	0		ENST00000563328.4_1_16:72822270-72822732:+|nuORF	ENST00000563328.4_1_16:72822270-72822732:+|nuORF	ENST00000563328.4_1_16:72822270-72822732:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.8023681640625	2	545.255317	1088.49608	-0.57033	-0.00031097	-3.1428	-0.0017136	-3.7131	-0.0020246	545.253470303112	53.786	0.57052	53.786	53.519	54.089	0					28	13	3	0	0	0	0.027353	1	4270	4270		71.877	5.4482	1	666040			22833	13784	18650	18673	25329	25329					-0.04462780188191573
KEQLEAEAQAL	11	Unmodified	_KEQLEAEAQAL_					0	0	0		nc|ENSG00000163346|Q96AQ6-3|PBXIP1;nc|ENSG00000163346|Q96AQ6-2|PBXIP1;ENSG00000163346|ENST00000368463|PBXIP1	nc|ENSG00000163346|Q96AQ6-3|PBXIP1	nc|ENSG00000163346|Q96AQ6-3|PBXIP1	MULTI-MSMS	OvCa99_classI_Rep5	1	615.3240356445312	2	615.322242	1228.62993	0.60938	0.00037497	0.28621	0.00017611	0.89559	0.00055108	615.3223663368468	74.336	0.86664	74.336	74.095	74.962	0					47	21	4	0	0	0	0.15372	1	7343	7343		86.189	0.32714	1	4113100			22834	6289	18651	18674	25330	25330					0.024761571183944397
KEQNSILVQLA	11	Unmodified	_KEQNSILVQLA_					0	0	0			REV__ENSG00000205339|ENST00000379719|IPO7	REV__ENSG00000205339|ENST00000379719|IPO7	MULTI-SECPEP	OvCa99_classI_Rep5	1	621.8165893554688	2	621.856252	1241.69795	-0.34023	-0.00021158	4.4608	0.002774	4.1206	0.0025624	621.8589369511479	63.612	0.71487	63.612	63.376	64.091	0					37	17	3	0	0	0	0.025615	1	5724	5724		66.962	0	1	1529800	+		22835	23212	18652	18675	25331	25331					0.08677026769055374
KEQPEEASES	10	Unmodified	_KEQPEEASES_					0	0	0			REV__ENST00000529239.1_1_8:61851827-61852067:-|nuORF	REV__ENST00000529239.1_1_8:61851827-61852067:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	566.2813720703125	2	567.251482	1132.48841	2.0552	0.0011658	3.1911	0.0018102	5.2463	0.002976	567.2527475294079	67.75	0.73415	64.259	63.888	64.622	-3.4902					17	14	2	0	0	0	0.026849	1	4947	4947		40.778	10.275	1	28939	+		22836	27189	18653	18676	25332	25332					-0.0725326097474408
KEQQDLLR	8	Unmodified	_KEQQDLLR_					0	0	0			REV__nc|ENSG00000157637|Q9HBR0-3|SLC38A10	REV__nc|ENSG00000157637|Q9HBR0-3|SLC38A10	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7739868164062	2	515.288005	1028.56146	-0.4949	-0.00025502	-0.24727	-0.00012742	-0.74217	-0.00038243	515.2879330883068	65.273	1.0291	65.273	64.875	65.904	0					51	25	3	0	0	0	0.028476	1	6000	6000		73.975	0	1	2098800	+		22837	20527	18654	18677	25333	25333					0.04831957329179204
KEQQRDLEL	9	Unmodified	_KEQQRDLEL_					0	0	0			REV__tr|A0A7D6VXD5|A0A7D6VXD5_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08085PE=4SV=1	REV__tr|A0A7D6VXD5|A0A7D6VXD5_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08085PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.2916259765625	2	579.809302	1157.60405	1.7193	0.00099684	3.6464	0.0021142	5.3657	0.0031111	579.8115569147607	99.875	0.66814	99.875	99.612	100.28	0					37	15	4	0	0	0	0.027304	1	11054	11054		87.696	7.9839	1	1437700	+		22838	31774	18655	18678	25334	25334					0.03155307666770568
KEQQRDLEL	9	Unmodified	_KEQQRDLEL_					0	0	0			REV__tr|A0A7D6VXD5|A0A7D6VXD5_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08085PE=4SV=1	REV__tr|A0A7D6VXD5|A0A7D6VXD5_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08085PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	579.809302	1157.60405	-1.9649	-0.0011393	6.8717	0.0039843	4.9068	0.002845	579.8133309640252	101.34	0.36799	99.73	99.498	99.866	-1.6053	-0.072699	0.0029847	NaN	87.696	9	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82973	+		22839	31774	18655	18678							0.03155307666770568
KEQQRMYDKLD	11	Unmodified	_KEQQRMYDKLD_					0	0	0			REV__SRSF4|p.A127Qfs*4|1|0.18|ENSG00000116350|chr1:29154895-29154895|C/-|frameshift_variant	REV__SRSF4|p.A127Qfs*4|1|0.18|ENSG00000116350|chr1:29154895-29154895|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.25543212890625	3	485.241647	1452.70311	-0.13244	-6.4266E-05	-2.1861	-0.0010608	-2.3186	-0.0011251	485.2399421050806	71.03	0.47169	71.03	70.877	71.349	0					16	11	2	0	0	0	0.026101	1	6827	6827		21.032	5.1116	1	224870	+		22840	29455	18656	18679	25335	25335					-0.005130374306645535
KEQRERDD	8	Unmodified	_KEQRERDD_					0	0	0		ENSG00000187672|ENST00000288221|ERC2	ENSG00000187672|ENST00000288221|ERC2	ENSG00000187672|ENST00000288221|ERC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.783447265625	2	538.259976	1074.5054	-1.5198	-0.00081807	3.8159	0.002054	2.2961	0.0012359	538.2621145196787	53.213	0.80094	50.005	49.553	50.354	-3.208					36	15	4	0	0	0	0.028476	1	3197	3197		30.504	5.0535	1	50689			22841	8422	18657	18680	25336	25336					-0.028872955782844656
KEQVKGMSLL	10	Unmodified	_KEQVKGMSLL_					0	0	0			REV__nc|ENSG00000230453|A2A2Z9|ANKRD18B	REV__nc|ENSG00000230453|A2A2Z9|ANKRD18B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.8073120117188	2	566.823366	1131.63218	0.022853	1.2954E-05	-3.3044	-0.001873	-3.2816	-0.0018601	566.8216135367505	70.905	1.0192	67.449	67.203	68.222	-3.4563					34	20	2	0	0	0	0.026849	1	5421	5421		32.812	3.6629	1	147940	+		22842	23381	18658	18681	25337	25337					0.07162914322498182
KEREEDIDL	9	Unmodified	_KEREEDIDL_					0	0	0		ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000145675|P27986-4|PIK3R1;ENST00000517412.1_1_5:67522458-67569396:+|nuORF	ENSG00000145675|ENST00000521381|PIK3R1	ENSG00000145675|ENST00000521381|PIK3R1	MSMS	OvCa99_classI_Rep5	1	573.7887573242188	2	573.785492	1145.55643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.707	1	53.707	53.207	54.207	0								0	0	0	0.028623	1	4286	4286		90.37	0	1				22843	5235	18659	18682	25338	25338					-0.010523913240831462
KERGSLTVL	9	Unmodified	_KERGSLTVL_					0	0	0		ENSG00000170456|ENST00000389082|DENND5B;DNAJB9-DENND5B|1|fusion;nc|ENSG00000170456|Q6ZUT9-2|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	ENSG00000170456|ENST00000389082|DENND5B	MULTI-MSMS	OvCa9_classI_Rep2	2	501.8011474609375	2	501.800749	1001.58694	-1.5877	-0.00079669	1.4164	0.00071076	-0.17123	-8.5922E-05	501.8013243649723	33.42	0.84515	30.71	30.52	31.365	-2.7097					36	16	3	0	0	0	0.48324	1	1200	1200		44.117	4.864	1	108730			22844	752	18660	18683	25339	25339					0.08621431851599937
KERKHVGH	8	Unmodified	_KERKHVGH_					0	0	0			REV__ENSG00000159915|ENST00000683810|ZNF233	REV__ENSG00000159915|ENST00000683810|ZNF233	MULTI-MSMS	OvCa99_classI_Rep5	1	495.78326416015625	2	495.783225	989.551896	-1.0231	-0.00050722	-0.22903	-0.00011355	-1.2521	-0.00062077	495.7830315979758	34.888	0.42363	34.888	34.725	35.149	0					15	8	3	0	0	0	0.57878	1	1723	1723		68.485	12.051	1	296370	+		22845	20632	18661	18684	25340	25340					0.056702338343257
KERKHVGH	8	Unmodified	_KERKHVGH_					0	0	0			REV__ENSG00000159915|ENST00000683810|ZNF233	REV__ENSG00000159915|ENST00000683810|ZNF233	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	495.783225	989.551896	-1.0231	-0.00050722	-0.22903	-0.00011355	-1.2521	-0.00062077	495.7830315979758	34.888	0.42363	34.888	34.725	35.149	0	0	0	NaN	68.485	15	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	296370	+		22846	20632	18661	18684							0.056702338343257
KERKIEEME	9	Unmodified	_KERKIEEME_					0	0	0		tr|A0A7D6VNA3|A0A7D6VNA3_9CLOTFlagellarhook-associatedprotein2OS=ClostridiumintestinaleOX=36845GN=fliDPE=3SV=1	tr|A0A7D6VNA3|A0A7D6VNA3_9CLOTFlagellarhook-associatedprotein2OS=ClostridiumintestinaleOX=36845GN=fliDPE=3SV=1	tr|A0A7D6VNA3|A0A7D6VNA3_9CLOTFlagellarhook-associatedprotein2OS=ClostridiumintestinaleOX=36845GN=fliDPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	596.306884765625	2	596.305538	1190.59652	-0.17714	-0.00010563	-0.016386	-9.7709E-06	-0.19352	-0.0001154	596.3054687087324	46.961	7.1463	46.961	46.587	53.733	0					374	164	4	0	0	0	0.2422	2	3841	3841;3931		69.628	2.134	1	16604000			22847	34686	18662	18685	25341;25342	25341					0.00884832074825681
KERLKKVKG	9	Unmodified	_KERLKKVKG_					0	0	0		ENST00000536684.2_1_11:10529843-10529987:-|nuORF	ENST00000536684.2_1_11:10529843-10529987:-|nuORF	ENST00000536684.2_1_11:10529843-10529987:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.3610229492188	2	543.361308	1084.70806	-0.74826	-0.00040658	0.78081	0.00042426	0.032546	1.7684E-05	543.3616145864607	20.908	1.2121	19.569	19.311	20.523	-1.3386					60	24	3	0	0	0	0.22621	1	120	120		71.877	5.4482	1	288780			22848	13393	18663	18686	25343	25343					0.1690967928493592
KERLKRIHVM	10	Unmodified	_KERLKRIHVM_					0	0	0			REV__tr|A0A553SIP3|A0A553SIP3_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_15270PE=4SV=1	REV__tr|A0A553SIP3|A0A553SIP3_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_15270PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	436.9341735839844	3	437.267691	1308.78124	0.78973	0.00034532	-0.11584	-5.0654E-05	0.67389	0.00029467	437.26749761165166	30.607	0.79416	30.607	30.086	30.881	0					31	15	4	0	0	0	0.027193	1	1189	1189		11.636	0	1	112610	+		22849	29914	18664	18687	25344	25344					0.13920484735899663
KERLLLEDL	9	Unmodified	_KERLLLEDL_					0	0	0		tr|A0A7D6ZJC0|A0A7D6ZJC0_9CLOTSporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08120PE=4SV=1	tr|A0A7D6ZJC0|A0A7D6ZJC0_9CLOTSporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08120PE=4SV=1	tr|A0A7D6ZJC0|A0A7D6ZJC0_9CLOTSporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08120PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.8472290039062	2	564.834788	1127.65502	2.0485	0.0011571	1.5279	0.00086304	3.5765	0.0020201	564.8344506990986	116.74	0.31027	116.74	116.55	116.86	0					10	6	2	0	0	0	0.027462	1	13345	13345		31.53	0	1	112990			22850	35639	18665	18688	25345	25345					0.09630256711625407
KERMAQRF	8	Unmodified	_KERMAQRF_					0	0	0		ENSG00000112578|ENST00000230340|BYSL	ENSG00000112578|ENST00000230340|BYSL	ENSG00000112578|ENST00000230340|BYSL	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.3103637695312	2	533.284743	1064.55493	-0.47558	-0.00025362	3.9694	0.0021168	3.4938	0.0018632	533.2869533410604	29.229	0.34909	29.229	29.087	29.436	0					14	6	3	0	0	0	0.028476	1	1009	1009		108.09	31.313	1	59904			22851	2911	18666	18689	25346	25346					0.025237408968223463
KERPFYCF	8	Unmodified	_KERPFYCF_					0	0	0		tr|A0A553SLH4|A0A553SLH4_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_20675PE=4SV=1	tr|A0A553SLH4|A0A553SLH4_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_20675PE=4SV=1	tr|A0A553SLH4|A0A553SLH4_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_20675PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.7860107421875	2	545.262945	1088.51134	-0.06013	-3.2786E-05	1.5316	0.00083511	1.4714	0.00080233	545.764840059081	113.15	0.29687	111.7	111.56	111.85	-1.4461					12	5	3	0	0	0	0.028476	1	10472	10472		26.796	0	1	9393.5			22852	33723	18667	18690	25347	25347					-0.029378686003155963
KERREKAK	8	Unmodified	_KERREKAK_					0	0	0			REV__nc|ENSG00000009954|Q9UIG0-2|BAZ1B	REV__nc|ENSG00000009954|Q9UIG0-2|BAZ1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.2674560546875	2	522.817264	1043.61998	-0.597	-0.00031212	-0.72171	-0.00037732	-1.3187	-0.00068945	522.8167601392275	30.261	0.7454	30.261	29.986	30.731	0					28	14	4	0	0	0	0.028476	1	1202	1202		23.042	0	1	350320	+		22853	16471	18668	18691	25348	25348					0.09991058694299682
KERSGVSL	8	Unmodified	_KERSGVSL_					0	0	0		ENSG00000168298|ENST00000304218|H1-4;HIST1H1E|p.A61D|1|0.36|ENSG00000168298|chr6:26156572-26156572|C/A|missense_variant;ENSG00000187837|ENST00000343677|H1-2;ENSG00000124575|ENST00000244534|H1-3	ENSG00000168298|ENST00000304218|H1-4;ENSG00000187837|ENST00000343677|H1-2;ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MULTI-MSMS	OvCa9_classI_Rep4_	4	438.25091552734375	2	438.250892	874.48723	-0.59791	-0.00026204	0.25648	0.0001124	-0.34143	-0.00014963	438.2509557447157	40.557	1.9268	37.603	37.315	39.242	-2.9541					110	36	5	0	0	0	0.53252	2	1753	1753;1779		74.255	8.4519	1	1459300			22854	3662;6889;8438	18669	18692	25349;25350	25349					0.04496614237677932
KERTQGKAY	9	Unmodified	_KERTQGKAY_					0	0	0			REV__ENST00000461179.2_1_1:179339175-179437601:+|nuORF	REV__ENST00000461179.2_1_1:179339175-179437601:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2708740234375	2	540.793455	1079.57236	-0.13797	-7.4612E-05	0.1031	5.5758E-05	-0.034864	-1.8854E-05	540.7930942647602	56.568	0.56807	56.568	56.22	56.788	0					23	13	2	0	0	0	0.027461	1	4727	4727		49.442	17.912	1	610750	+		22855	20778	18670	18693	25351	25351					0.035753597034727136
KESATEEKL	9	Unmodified	_KESATEEKL_					0	0	0		ENST00000552390.5_1_12:57926966-57928919:-|nuORF;DCTN2|p.L382Ffs*16|1|0.31|ENSG00000175203|chr12:57530751-57530752|-/AA|frameshift_variant;ENSG00000175203|ENST00000548249|DCTN2;nc|ENSG00000175203|Q13561-3|DCTN2;nc|ENSG00000175203|Q13561-2|DCTN2	ENST00000552390.5_1_12:57926966-57928919:-|nuORF	ENST00000552390.5_1_12:57926966-57928919:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	517.7717895507812	2	517.771854	1033.52915	-0.27157	-0.00014061	0.34565	0.00017897	0.074073	3.8353E-05	517.7719092997586	32.172	0.74546	32.172	31.807	32.553	0					21	11	3	0	0	0	0.17606	1	1384	1384		80.455	3.6805	1	265150			22856	713	18671	18694	25352	25352					0.013731251355238783
KESDGLDVTLA	11	Unmodified	_KESDGLDVTLA_					0	0	0			REV__nc|ENSG00000260220|A0A096LP49-2|CCDC187	REV__nc|ENSG00000260220|A0A096LP49-2|CCDC187	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.8159790039062	2	574.295693	1146.57683	-0.89293	-0.00051281	1.1289	0.00064831	0.23595	0.00013551	574.2960054814484	25.918	0.29974	25.918	25.643	25.943	0					9	5	3	0	0	0	0.025638	1	623	623		30.318	2.4355	1	44512	+		22857	23558	18672	18695	25353	25353					0.009407793357468108
KESDNNVKL	9	Unmodified	_KESDNNVKL_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	OvCa99_classI_Rep5	1	523.7785034179688	2	523.77747	1045.54039	-0.6128	-0.00032097	1.1654	0.00061042	0.55262	0.00028945	523.7780673532558	35.726	0.9221	35.726	35.475	36.397	0					44	19	5	0	0	0	0.045281	1	1822	1822		122.18	20.575	1	1769500			22858	3919	18673	18696	25354	25354					0.019439472296653548
KESDNNVKL	9	Unmodified	_KESDNNVKL_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	523.77747	1045.54039	-1.1601	-0.00060763	-0.066934	-3.5059E-05	-1.227	-0.00064269	523.7775436547881	38.615	0.49364	35.906	35.667	36.161	-2.7097	0.089589	-0.00065324	NaN	122.18	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14557			22859	3919	18673	18696							0.019439472296653548
KESEDKPEI	9	Unmodified	_KESEDKPEI_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	OvCa99_classI_Rep5	1	537.7694091796875	2	537.769311	1073.52407	-0.77647	-0.00041756	0.0066336	3.5673E-06	-0.76984	-0.000414	537.7693200085632	36.375	1.502	36.375	36.119	37.621	0					86	32	6	0	0	0	0.030867	2	1906	1906;1930		134.77	16.023	1	7168800			22860	1643	18674	18697	25355;25356	25355					-0.009751787270943169
KESEEKEVL	9	Unmodified	_KESEEKEVL_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A;ENST00000557382.1_1_14:91925105-91927973:-|nuORF	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MSMS	OvCa99_classI_Rep5	1	545.7846069335938	2	545.784961	1089.55537	-1.0831	-0.00059116	0.68555	0.00037416	-0.3976	-0.000217	545.7849569950085	36.86	0.72625	36.86	36.618	37.344	0					43	15	4	0	0	0	0.013371	1	1973	1973		158.07	35.899	1	1843900			22861	2105	18675	18698	25357	25357					0.0141739430700909
KESEEKEVL	9	Unmodified	_KESEEKEVL_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A;ENST00000557382.1_1_14:91925105-91927973:-|nuORF	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	545.784961	1089.55537	-1.0099	-0.00055118	4.5984	0.0025097	3.5885	0.0019586	545.787608236762	39.276	0.24691	36.567	36.41	36.657	-2.7097	-0.093793	0.0024723	NaN	158.07	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9929.2			22862	2105	18675	18698							0.0141739430700909
KESEEKEVL	9	Unmodified	_KESEEKEVL_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-4|PPP4R3A;ENST00000557382.1_1_14:91925105-91927973:-|nuORF	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	545.784961	1089.55537	-0.5292	-0.00028883	3.8034	0.0020758	3.2742	0.001787	545.7872810114167	39.48	0.84422	36.554	36.047	36.891	-2.9264	-0.10626	0.0016045	NaN	158.07	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23880			22863	2105	18675	18698							0.0141739430700909
KESEVFYEL	9	Unmodified	_KESEVFYEL_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MULTI-MSMS	OvCa99_classI_Rep5	1	572.2838134765625	2	572.282054	1142.54956	2.5362	0.0014514	-0.36577	-0.00020932	2.1704	0.0012421	572.28167142139	97.889	0.94083	97.889	97.611	98.552	0					67	21	5	0	0	0	0.046778	2	10774	10754;10774		120.87	25.053	1	11567000			22864	2095	18676	18699	25358;25359	25359					-0.016017042046541974
KESEVFYEL	9	Unmodified	_KESEVFYEL_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MULTI-MSMS	OvCa9_classI_Rep2	2	572.281005859375	2	572.282054	1142.54956	-1.5273	-0.00087405	1.2016	0.00068763	-0.32576	-0.00018642	572.2825723563229	99.171	1.6885	98.278	97.857	99.545	-0.89305					90	33	5	0	0	0	0.10502	6	9029	9024;9029;9035;9040;9047;9053		95.815	26.07	1	640930			22865	2095	18676	18699	25360;25361;25362;25363;25364;25365	25361					-0.016017042046541974
KESEVFYEL	9	Unmodified	_KESEVFYEL_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MULTI-MSMS	OvCa9_classI_Rep3	3	572.28271484375	2	572.282054	1142.54956	-1.0071	-0.00057632	-0.42687	-0.00024429	-1.4339	-0.00082061	572.2816685949413	99.976	1.9549	98.291	97.726	99.681	-1.685					89	38	4	0	0	0	0.14855	4	6757	6751;6757;6769;6775		85.161	14.13	1	732180			22866	2095	18676	18699	25366;25367;25368;25369	25367					-0.016017042046541974
KESEVFYEL	9	Unmodified	_KESEVFYEL_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MULTI-MSMS	OvCa9_classI_Rep4_	4	572.28271484375	2	572.282054	1142.54956	-1.2364	-0.00070756	0.79125	0.00045282	-0.44513	-0.00025474	572.2823750627892	100.58	1.8921	98.311	97.978	99.87	-2.2665					97	37	5	0	0	0	0.14855	2	8991	8991;9030		85.161	7.8432	1	775740			22867	2095	18676	18699	25370;25371	25370					-0.016017042046541974
KESHATLVF	9	Unmodified	_KESHATLVF_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3;STAT3|p.N59I|1|0.1|ENSG00000168610|chr17:42346666-42346666|T/A|missense_variant	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	OvCa9_classI_Rep2	2	516.2786254882812	2	516.279649	1030.54475	-0.68759	-0.00035499	0.026972	1.3925E-05	-0.66062	-0.00034106	516.2795595911887	67.546	1.4315	64.885	64.446	65.878	-2.661					69	28	3	0	0	0	0.094616	3	5279	5279;5292;5299		98.629	29.843	1	532760			22868	6923	18677	18700	25372;25373;25374	25372					0.030694564432451443
KESKVEQL	8	Unmodified	_KESKVEQL_					0	0	0			REV__tr|A0A7D6VRG8|A0A7D6VRG8_9CLOTFRGdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06920PE=4SV=1	REV__tr|A0A7D6VRG8|A0A7D6VRG8_9CLOTFRGdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06920PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	480.7715759277344	2	480.771657	959.528761	-0.74076	-0.00035614	-0.079923	-3.8425E-05	-0.82068	-0.00039456	480.7717098372101	34.934	0.88847	34.934	34.725	35.614	0					44	18	4	0	0	0	0.19367	1	1717	1717		125.81	0	1	1782400	+		22869	31417	18678	18701	25375	25375					0.04737750206345481
KESLDVSRL	9	Unmodified	_KESLDVSRL_					0	0	0		nc|ENSG00000117385|Q32P28-4|P3H1;ENSG00000117385|ENST00000296388|P3H1;nc|ENSG00000117385|Q32P28-3|P3H1;ENST00000460031.5_1_1:43212370-43220777:-|nuORF	nc|ENSG00000117385|Q32P28-4|P3H1	nc|ENSG00000117385|Q32P28-4|P3H1	MULTI-MSMS	OvCa99_classI_Rep5	1	523.7959594726562	2	523.795663	1045.57677	0.12061	6.3173E-05	-0.12666	-6.6341E-05	-0.006049	-3.1684E-06	523.7954793730565	63.279	0.5476	63.279	63.1	63.648	0					31	13	3	0	0	0	0.13326	1	5681	5681		88.177	0.42264	1	3938900			22870	3251	18679	18702	25376	25376					0.055808241263775926
KESLKELSL	9	Unmodified	_KESLKELSL_					0	0	0		ENST00000525522.5_1_11:494693-499199:-|nuORF;ENST00000525701.5_1_11:494693-500690:-|nuORF;ENSG00000023191|ENST00000354420|RNH1	ENST00000525522.5_1_11:494693-499199:-|nuORF	ENST00000525522.5_1_11:494693-499199:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.8090209960938	2	523.808239	1045.60193	-0.91131	-0.00047735	-0.029269	-1.5331E-05	-0.94058	-0.00049268	523.8081209350847	79.647	1.1582	76.896	76.466	77.624	-2.7514					56	23	3	0	0	0	0.2422	1	6476	6476		69.628	0	1	536130			22871	1036	18680	18703	25377	25377					0.0809487892895504
KESLLLQKL	9	Unmodified	_KESLLLQKL_					0	0	0		SPTA1|p.L1630Afs*42|1|0.08|ENSG00000163554|chr1:158639675-158639676|-/T|frameshift_variant;SPTA1|p.S2024Rfs*32|1|0.04|ENSG00000163554|chr1:158623034-158623034|G/-|frameshift_variant;SPTA1|p.V2114Gfs*21|1|0.16|ENSG00000163554|chr1:158620246-158620247|-/ATCTTCTAAGTCTCCTTTTTCTAGGTCATTTACCC|frameshift_variant;nc|ENSG00000163554|P02549-2|SPTA1;ENSG00000163554|ENST00000643759|SPTA1	SPTA1|p.L1630Afs*42|1|0.08|ENSG00000163554|chr1:158639675-158639676|-/T|frameshift_variant	SPTA1|p.L1630Afs*42|1|0.08|ENSG00000163554|chr1:158639675-158639676|-/T|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3014526367188	2	536.342249	1070.66995	0.27204	0.00014591	-0.76391	-0.00040972	-0.49188	-0.00026381	536.3418197016016	46.145	0.9633	46.145	45.667	46.631	0					34	21	2	0	0	0	0.027232	1	3238	3238		99.375	0	1	110270			22872	6325	18681	18704	25378	25378					0.1374374857962266
KESLSLVFLLP	11	Unmodified	_KESLSLVFLLP_					0	0	0			REV__chr1:103745515-103750424|261|25.86|0.0|21.3|+|2|TE_info:HERVE_a-int,HERVE_a-int_dup8,ERV1,LTR,donor,-,103742654,103745515|None,AMY1C|46	REV__chr1:103745515-103750424|261|25.86|0.0|21.3|+|2|TE_info:HERVE_a-int,HERVE_a-int_dup8,ERV1,LTR,donor,-,103742654,103745515|None,AMY1C|46	MULTI-SECPEP	OvCa99_classI_Rep5	1	622.83447265625	2	623.376289	1244.73803	-0.62835	-0.0003917	-2.3609	-0.0014717	-2.9892	-0.0018634	623.3744085775892	55.655	0.49149	55.655	55.44	55.932	0					24	11	3	0	0	0	0.025271	1	4578	4578		36.447	0	1	419810	+		22873	15794	18682	18705	25379	25379					0.12544573439618034
KESNPIESI	9	Unmodified	_KESNPIESI_					0	0	0			REV__tr|A0A553SGJ4|A0A553SGJ4_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_10975PE=4SV=1	REV__tr|A0A553SGJ4|A0A553SGJ4_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_10975PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	508.7660827636719	2	508.766571	1015.51859	-2.5431	-0.0012939	2.0709	0.0010536	-0.47219	-0.00024023	508.7675091980884	37.121	1.4274	34.411	33.942	35.37	-2.7097					85	28	4	0	0	0	0.33652	1	1699	1699		58.782	2.0609	1	798860	+		22874	29707	18683	18706	25380	25380					0.011451424810957178
KESPLLFKF	9	Unmodified	_KESPLLFKF_					0	0	0		ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	MULTI-MSMS	OvCa9_classI_Rep2	2	554.822265625	2	554.823692	1107.63283	-0.31413	-0.00017429	-0.29198	-0.000162	-0.60612	-0.00033629	554.8234490919667	100.46	1.4869	99.633	99.261	100.75	-0.83051					69	29	3	0	0	0	0.033166	3	9192	9186;9192;9198		132.76	47.597	1	285270			22875	5327	18684	18707	25381;25382;25383	25382					0.0833207703383323
KESPLLFKF	9	Unmodified	_KESPLLFKF_					0	0	0		ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	MULTI-MSMS	OvCa9_classI_Rep3	3	554.8238525390625	2	554.823692	1107.63283	-1.3862	-0.00076909	1.295	0.00071852	-0.091138	-5.0566E-05	554.8242746673808	101.52	1.4671	99.914	99.498	100.97	-1.6053					47	27	2	0	0	0	0.022645	2	6955	6949;6955		143.89	53.517	1	302750			22876	5327	18684	18707	25384;25385	25385					0.0833207703383323
KESPLLFKF	9	Unmodified	_KESPLLFKF_					0	0	0		ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	MSMS	OvCa9_classI_Rep4_	4	554.825439453125	2	554.823692	1107.63283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.1	1	99.903	99.403	100.4	-2.1994								0	0	0	0.043201	1	9186	9186		79.713	0	1				22877	5327	18684	18707	25386	25386					0.0833207703383323
KESPLLFKF	9	Unmodified	_KESPLLFKF_					0	0	0		ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	MSMS	OvCa9_classI_Rep4_	4	554.8234252929688	2	554.823692	1107.63283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.19	1	99.988	99.488	100.49	-2.1994								0	0	0	0.015318	1	9195	9195		136.27	45.898	1				22878	5327	18684	18707	25387	25387					0.0833207703383323
KESPLLFKF	9	Unmodified	_KESPLLFKF_					0	0	0		ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	MSMS	OvCa9_classI_Rep4_	4	554.8237915039062	2	554.823692	1107.63283	NaN	NaN	NaN	NaN	NaN	NaN	NaN	102.29	1	100.09	99.594	100.59	-2.1994								0	0	0	0.16939	1	9207	9207		52.937	3.4007	1				22879	5327	18684	18707	25388	25388					0.0833207703383323
KESQELIVQ	9	Unmodified	_KESQELIVQ_					0	0	0		PTPRM|p.T546Hfs*3|1|0.08|ENSG00000173482|chr18:8085754-8085755|-/CATCGCTG|frameshift_variant;nc|ENSG00000173482|P28827|PTPRM;ENSG00000173482|ENST00000580170|PTPRM	PTPRM|p.T546Hfs*3|1|0.08|ENSG00000173482|chr18:8085754-8085755|-/CATCGCTG|frameshift_variant	PTPRM|p.T546Hfs*3|1|0.08|ENSG00000173482|chr18:8085754-8085755|-/CATCGCTG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.2637329101562	2	537.295496	1072.57644	-0.4159	-0.00022346	-1.644	-0.00088331	-2.0599	-0.0011068	537.2947937921502	61.321	0.17395	61.321	61.2	61.374	0					5	3	2	0	0	0	0.027462	1	5404	5404		18.262	0	1	246570			22880	7383	18685	18708	25389	25389					0.04305404406522939
KESQFLKEEL	10	Unmodified	_KESQFLKEEL_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;CTNNA1-KDM3B|1|fusion	ENSG00000044115|ENST00000302763|CTNNA1;CTNNA1-KDM3B|1|fusion	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	OvCa99_classI_Rep5	1	625.8370361328125	2	625.834985	1249.65542	-1.0824	-0.00067742	0.63814	0.00039937	-0.44428	-0.00027805	625.8353244433164	70.17	0.83876	70.17	69.883	70.722	0					57	20	4	0	0	0	0.094891	2	6700	6700;6733		114.89	10.838	1	6564200			22881	1131;693	18686	18709	25390;25391	25390					0.0405763164083055
KESQFLKEEL	10	Unmodified	_KESQFLKEEL_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;CTNNA1-KDM3B|1|fusion	ENSG00000044115|ENST00000302763|CTNNA1;CTNNA1-KDM3B|1|fusion	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	625.834985	1249.65542	-0.71929	-0.00045016	0.73463	0.00045976	0.015335	9.5969E-06	625.8350533404063	72.92	0.93876	70.52	70.167	71.106	-2.3999	0.088524	0.00033714	NaN	114.89	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51974			22882	1131;693	18686	18709							0.0405763164083055
KESQFLKEEL	10	Unmodified	_KESQFLKEEL_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;CTNNA1-KDM3B|1|fusion	ENSG00000044115|ENST00000302763|CTNNA1;CTNNA1-KDM3B|1|fusion	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	625.834985	1249.65542	0.65946	0.00041271	-0.50304	-0.00031482	0.15642	9.7892E-05	625.834290373485	73.091	0.94257	70.604	70.332	71.275	-2.4873	0.17247	-0.001212	NaN	114.89	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84212			22883	1131;693	18686	18709							0.0405763164083055
KESSTVFEL	9	Unmodified	_KESSTVFEL_					0	0	0		ENSG00000103363|ENST00000409906|ELOB;nc|ENSG00000103363|Q15370-2|ELOB	ENSG00000103363|ENST00000409906|ELOB	ENSG00000103363|ENST00000409906|ELOB	MULTI-MSMS	OvCa99_classI_Rep5	1	520.2708740234375	2	520.268947	1038.52334	2.5278	0.0013151	-0.52011	-0.0002706	2.0077	0.0010445	520.2685991434009	89.716	0.70838	89.716	89.435	90.143	0					66	16	6	0	0	0	0.1149	1	9598	9598		93.143	19.169	1	18983000			22884	2312	18687	18710	25392	25392					0.005620266238793192
KESSTVFEL	9	Unmodified	_KESSTVFEL_					0	0	0		ENSG00000103363|ENST00000409906|ELOB;nc|ENSG00000103363|Q15370-2|ELOB	ENSG00000103363|ENST00000409906|ELOB	ENSG00000103363|ENST00000409906|ELOB	MULTI-MSMS	OvCa9_classI_Rep3	3	520.26953125	2	520.268947	1038.52334	-1.0188	-0.00053003	-0.7052	-0.00036689	-1.724	-0.00089692	520.2684434874936	92.177	1.6249	90.153	89.839	91.464	-2.0241					81	33	3	0	0	0	0.070405	4	5815	5815;5821;5827;5833		107.01	13.001	1	1289600			22885	2312	18687	18710	25393;25394;25395;25396	25393					0.005620266238793192
KESTAEKDEL	10	Unmodified	_KESTAEKDEL_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;nc|ENSG00000259706|Q58FF3|HSP90B2P	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	OvCa99_classI_Rep5	1	575.2849731445312	2	575.285325	1148.5561	-0.15163	-8.723E-05	-0.64126	-0.00036891	-0.79289	-0.00045614	575.2849239233129	31.931	0.94222	31.931	31.757	32.7	0					50	18	5	0	0	0	0.059086	1	1348	1348		125.71	24.112	1	1942600			22886	6697	18688	18711	25397	25397					-0.012238110439284355
KESTLHLVL	9	Unmodified	_KESTLHLVL_					0	0	0		ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000221983|ENST00000442744|UBA52;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000392399.3_1_2:137087013-137087097:-|nuORF;UBC|p.K215_E216dup|1|0.04|ENSG00000150991|chr12:124913123-124913124|-/CTCTTT|inframe_insertion	ENSG00000150991|ENST00000339647|UBC	ENSG00000150991|ENST00000339647|UBC	MULTI-MSMS	OvCa99_classI_Rep5	1	520.3121948242188	2	520.310949	1038.60735	1.3734	0.00071457	-0.68863	-0.0003583	0.68473	0.00035627	520.3111061136617	79.451	5.4702	79.451	79.119	84.589	0					437	131	6	0	0	0	0.019133	16	8116	8068;8116;8146;8170;8200;8230;8260;8284;8315;8346;8374;8405;8506;8539;8562;8588		148.04	75.1	1	499550000			22887	5110	18689	18712	25398;25399;25400;25401;25402;25403;25404;25405;25406;25407;25408;25409;25410;25411;25412;25413	25399					0.08958602511415847
KESTLHLVL	9	Unmodified	_KESTLHLVL_					0	0	0		ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000221983|ENST00000442744|UBA52;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000392399.3_1_2:137087013-137087097:-|nuORF;UBC|p.K215_E216dup|1|0.04|ENSG00000150991|chr12:124913123-124913124|-/CTCTTT|inframe_insertion	ENSG00000150991|ENST00000339647|UBC	ENSG00000150991|ENST00000339647|UBC	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3101806640625	2	520.310949	1038.60735	0.14844	7.7234E-05	-2.0534	-0.0010684	-1.9049	-0.00099116	520.3105317003465	83.067	5.527	81.468	80.593	86.12	-1.5988					351	109	6	0	0	0	0.012163	39	7149	7083;7089;7095;7101;7107;7113;7119;7125;7131;7137;7143;7149;7155;7161;7167;7173;7179;7185;7191;7197;7203;7209;7215;7221;7227;7233;7239;7246;7252;7258;7264;7270;7277;7283;7289;7295;7302;7308;7314		161.9	82.447	1	45250000			22888	5110	18689	18712	25414;25415;25416;25417;25418;25419;25420;25421;25422;25423;25424;25425;25426;25427;25428;25429;25430;25431;25432;25433;25434;25435;25436;25437;25438;25439;25440;25441;25442;25443;25444;25445;25446;25447;25448;25449;25450;25451;25452	25425					0.08958602511415847
KESTLHLVL	9	Unmodified	_KESTLHLVL_					0	0	0		ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000221983|ENST00000442744|UBA52;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000392399.3_1_2:137087013-137087097:-|nuORF;UBC|p.K215_E216dup|1|0.04|ENSG00000150991|chr12:124913123-124913124|-/CTCTTT|inframe_insertion	ENSG00000150991|ENST00000339647|UBC	ENSG00000150991|ENST00000339647|UBC	MULTI-MSMS	OvCa9_classI_Rep3	3	520.3114013671875	2	520.310949	1038.60735	-0.86712	-0.00045117	-1.2127	-0.00063096	-2.0798	-0.0010821	520.310859453145	83.74	5.2175	81.479	80.967	86.185	-2.261					341	105	5	0	0	0	0.012163	45	4828	4772;4775;4781;4787;4793;4798;4804;4810;4816;4822;4828;4834;4840;4846;4852;4858;4864;4870;4876;4882;4888;4894;4900;4906;4912;4918;4924;4930;4936;4942;4950;4956;4962;4967;4973;4979;4986;4993;4999;5005;5010;5016;5022;5028;5035		161.9	82.447	1	51839000			22889	5110	18689	18712	25453;25454;25455;25456;25457;25458;25459;25460;25461;25462;25463;25464;25465;25466;25467;25468;25469;25470;25471;25472;25473;25474;25475;25476;25477;25478;25479;25480;25481;25482;25483;25484;25485;25486;25487;25488;25489;25490;25491;25492;25493;25494;25495;25496;25497	25463					0.08958602511415847
KESTLHLVL	9	Unmodified	_KESTLHLVL_					0	0	0		ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000221983|ENST00000442744|UBA52;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000392399.3_1_2:137087013-137087097:-|nuORF;UBC|p.K215_E216dup|1|0.04|ENSG00000150991|chr12:124913123-124913124|-/CTCTTT|inframe_insertion	ENSG00000150991|ENST00000339647|UBC	ENSG00000150991|ENST00000339647|UBC	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.3117065429688	2	520.310949	1038.60735	0.40177	0.00020904	-2.1828	-0.0011358	-1.7811	-0.00092671	520.3102777714577	84.232	5.6405	81.569	80.486	86.126	-2.6629					292	114	6	0	0	0	0.012163	22	7117	7009;7021;7033;7045;7057;7069;7081;7093;7105;7117;7129;7141;7153;7165;7177;7188;7200;7212;7224;7236;7249;7261		161.9	79.593	1	49620000			22890	5110	18689	18712	25498;25499;25500;25501;25502;25503;25504;25505;25506;25507;25508;25509;25510;25511;25512;25513;25514;25515;25516;25517;25518;25519	25507					0.08958602511415847
KESTLHLVL	9	Unmodified	_KESTLHLVL_					0	0	0		ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000221983|ENST00000442744|UBA52;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000392399.3_1_2:137087013-137087097:-|nuORF;UBC|p.K215_E216dup|1|0.04|ENSG00000150991|chr12:124913123-124913124|-/CTCTTT|inframe_insertion	ENSG00000150991|ENST00000339647|UBC	ENSG00000150991|ENST00000339647|UBC	MULTI-MATCH	OvCa9_classI_Rep3	3		2	520.310949	1038.60735	-0.34534	-0.00017969	0.56125	0.00029202	0.21591	0.00011234	520.3106095754708	81.576	0.45127	79.253	78.957	79.408	-2.3226	-0.041588	0.0010269	NaN	148.04	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18826			22891	5110	18689	18712							0.08958602511415847
KESTLHLVL	9	Unmodified	_KESTLHLVL_					0	0	0		ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000221983|ENST00000442744|UBA52;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000584755.1_1_17:21731300-21731612:+|nuORF;ENST00000392399.3_1_2:137087013-137087097:-|nuORF;UBC|p.K215_E216dup|1|0.04|ENSG00000150991|chr12:124913123-124913124|-/CTCTTT|inframe_insertion	ENSG00000150991|ENST00000339647|UBC	ENSG00000150991|ENST00000339647|UBC	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	520.310949	1038.60735	-1.1404	-0.00059335	1.294	0.0006733	0.15366	7.995E-05	520.312204418405	81.863	0.52534	79.18	79.012	79.538	-2.6829	-0.11476	0.0017894	NaN	148.04	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25044			22892	5110	18689	18712							0.08958602511415847
KESVLESVK	9	Unmodified	_KESVLESVK_					0	0	0			REV__tr|A0A553SRU8|A0A553SRU8_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_01875PE=4SV=1	REV__tr|A0A553SRU8|A0A553SRU8_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_01875PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	509.7940368652344	2	509.792589	1017.57063	-0.1948	-9.9307E-05	-0.064997	-3.3135E-05	-0.2598	-0.00013244	509.79239715121156	40.86	0.57521	40.86	40.619	41.195	0					25	12	3	0	0	0	0.2784	1	2516	2516		65.465	10.689	1	361820	+		22893	30766	18690	18713	25520	25520					0.06254305894867684
KETAEHLDL	9	Unmodified	_KETAEHLDL_					0	0	0		nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-3|PPFIBP1	nc|ENSG00000110841|Q86W92-4|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1	nc|ENSG00000110841|Q86W92-4|PPFIBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	528.273193359375	2	528.272021	1054.52949	-0.67826	-0.00035831	0.17312	9.1453E-05	-0.50514	-0.00026685	528.2720983078607	53.241	0.98091	53.241	52.873	53.854	0					62	22	5	0	0	0	0.03923	2	4236	4213;4236		127.46	31.271	1	7631300			22894	2795;14956	18691	18714	25521;25522	25522					0.0044054485538254085
KETARGSLR	9	Unmodified	_KETARGSLR_					0	0	0			REV__nc|ENSG00000005379|O95153-2|TSPOAP1	REV__nc|ENSG00000005379|O95153-2|TSPOAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	509.2946472167969	2	509.293622	1016.57269	-0.64196	-0.00032695	1.5566	0.00079276	0.91462	0.00046581	509.294323728333	25.769	0.19979	25.769	25.594	25.793	0					7	3	3	0	0	0	0.49652	1	611	611		42.864	3.6114	1	335250	+		22895	16399	18692	18715	25523	25523					0.06506779423330045
KETARGSLR	9	Unmodified	_KETARGSLR_					0	0	0			REV__nc|ENSG00000005379|O95153-2|TSPOAP1	REV__nc|ENSG00000005379|O95153-2|TSPOAP1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	509.293622	1016.57269	-0.64196	-0.00032695	1.5566	0.00079276	0.91462	0.00046581	509.294323728333	25.769	0.19979	25.769	25.594	25.793	0	0	0	NaN	42.864	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	335250	+		22896	16399	18692	18715							0.06506779423330045
KETDERVIA	9	Unmodified	_KETDERVIA_					0	0	0			REV__tr|A0A7D7A2V0|A0A7D7A2V0_9CLOTFlippaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18955PE=4SV=1	REV__tr|A0A7D7A2V0|A0A7D7A2V0_9CLOTFlippaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18955PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.3172607421875	2	530.785296	1059.55604	0.062191	3.301E-05	0.94095	0.00049944	1.0031	0.00053245	531.2866359760133	32.885	0.83191	32.885	32.602	33.434	0					27	16	4	0	0	0	0.027137	1	1446	1446		87.696	0	1	120050	+		22897	32553	18693	18716	25524	25524					0.028642337467317702
KETDLLILF	9	Unmodified	_KETDLLILF_					0	0	0		ENSG00000138385|ENST00000260956|SSB;ENST00000465871.1_1_2:170663438-170665064:+|nuORF	ENSG00000138385|ENST00000260956|SSB	ENSG00000138385|ENST00000260956|SSB	MULTI-MSMS	OvCa9_classI_Rep2	2	546.31982421875	2	546.320983	1090.62741	-1.1603	-0.0006339	1.1543	0.00063063	-0.0059886	-3.2717E-06	546.3212828896337	140.04	0.97914	139.81	139.5	140.48	-0.22696					42	19	3	0	0	0	0.46356	1	13997	13997		45.972	0.020292	1	96543			22898	4683	18694	18717	25525	25525					0.08572353451381787
KETDLLILF	9	Unmodified	_KETDLLILF_					0	0	0		ENSG00000138385|ENST00000260956|SSB;ENST00000465871.1_1_2:170663438-170665064:+|nuORF	ENSG00000138385|ENST00000260956|SSB	ENSG00000138385|ENST00000260956|SSB	MULTI-MSMS	OvCa9_classI_Rep3	3	546.320068359375	2	546.320983	1090.62741	-2.5941	-0.0014172	2.4768	0.0013531	-0.11727	-6.4066E-05	546.3218690878751	140.9	1.3767	139.86	139.33	140.71	-1.0339					60	27	3	0	0	0	0.24951	3	11642	11624;11636;11642		68.787	5.4806	1	135350			22899	4683	18694	18717	25526;25527;25528	25528					0.08572353451381787
KETDVVLKV	9	Unmodified	_KETDVVLKV_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	OvCa99_classI_Rep5	1	515.8121948242188	2	515.810782	1029.60701	-0.12031	-6.2059E-05	-0.28004	-0.00014445	-0.40036	-0.00020651	515.8104775968352	64.85	1.2045	64.85	64.461	65.665	0					78	29	4	0	0	0	0.012503	1	5932	5932		160.82	59.569	1	13992000			22900	4035	18695	18718	25529	25529					0.09339182791586609
KETEAYALD	9	Unmodified	_KETEAYALD_					0	0	0			REV__DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	REV__DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.312255859375	2	520.250754	1038.48696	0.89715	0.00046674	-3.9347	-0.002047	-3.0376	-0.0015803	520.2488126463356	86.491	0.73856	83.864	83.463	84.201	-2.6269					17	14	2	0	0	0	0.027426	1	7273	7273		31.53	7.0106	1	22652	+		22901	16340	18696	18719	25530	25530					-0.03074850272855656
KETEENKEL	9	Unmodified	_KETEENKEL_					0	0	0		SCAP-SMARCC1|1|fusion;ENSG00000173473|ENST00000254480|SMARCC1	SCAP-SMARCC1|1|fusion	SCAP-SMARCC1|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	560.2808227539062	2	560.280043	1118.54553	0.049566	2.7771E-05	-0.71088	-0.00039829	-0.66132	-0.00037052	560.2795077998685	29.211	0.64901	29.211	28.987	29.636	0					29	12	4	0	0	0	0.066102	1	1019	1019		109.48	0	1	372730			22902	7382	18697	18720	25531	25531					-0.0089979369838602
KETEVFYEL	9	Unmodified	_KETEVFYEL_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1;ENST00000467888.5_1_2:46525050-46574567:+|nuORF	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-MSMS	OvCa99_classI_Rep5	1	579.2903442382812	2	579.289879	1156.56521	1.7337	0.0010043	0.85594	0.00049584	2.5897	0.0015002	579.2901392239967	99.904	0.53749	99.904	99.612	100.15	0					28	12	3	0	0	0	0.17606	1	11048	11048		80.455	5.4113	1	2903000			22903	3149	18698	18721	25532	25532					-0.0068141768761051935
KETEVFYEL	9	Unmodified	_KETEVFYEL_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1;ENST00000467888.5_1_2:46525050-46574567:+|nuORF	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-MSMS	OvCa9_classI_Rep2	2	579.2896118164062	2	579.289879	1156.56521	-1.5543	-0.00090038	1.1936	0.00069144	-0.36069	-0.00020894	579.2904358994801	100.97	1.2389	100.2	99.923	101.16	-0.764					72	24	4	0	0	0	0.1149	3	9244	9240;9244;9250		93.143	33.025	1	334770			22904	3149	18698	18721	25533;25534;25535	25534					-0.0068141768761051935
KETEVFYEL	9	Unmodified	_KETEVFYEL_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1;ENST00000467888.5_1_2:46525050-46574567:+|nuORF	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-MSMS	OvCa9_classI_Rep3	3	579.289794921875	2	579.289879	1156.56521	-1.7602	-0.0010196	1.6152	0.00093567	-0.14496	-8.3971E-05	579.2907524052065	101.76	1.4644	100.24	99.845	101.31	-1.5211					48	27	2	0	0	0	0.1149	3	6973	6961;6965;6973		93.143	29.837	1	460620			22905	3149	18698	18721	25536;25537;25538	25538					-0.0068141768761051935
KETGGVEKL	9	Unmodified	_KETGGVEKL_					0	0	0		ENSG00000164754|ENST00000297338|RAD21;RAD21-EIF3H|4|fusion	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.77044677734375	2	480.771657	959.528761	-0.47388	-0.00022783	0.38639	0.00018577	-0.087488	-4.2062E-05	480.77164367777146	39.991	1.2326	37.037	36.764	37.997	-2.9541					41	23	3	0	0	0	0.35694	1	1697	1697		56.434	6.9922	1	140390			22906	6484	18699	18722	25539	25539					0.04737750206322744
KETGGVEKL	9	Unmodified	_KETGGVEKL_					0	0	0		ENSG00000164754|ENST00000297338|RAD21;RAD21-EIF3H|4|fusion	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MATCH	OvCa9_classI_Rep2	2		2	480.771657	959.528761	-0.65819	-0.00031644	0.57959	0.00027865	-0.078596	-3.7787E-05	480.771669022489	39.847	0.49852	37.138	36.953	37.452	-2.7097	0.050264	0.00014567	NaN	56.434	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36393			22907	6484	18699	18722							0.04737750206322744
KETIMNQEKL	10	Unmodified	_KETIMNQEKL_					0	0	0		ENSG00000145741|ENST00000380591|BTF3;nc|ENSG00000145741|P20290-2|BTF3;ENST00000510787.5_1_5:72794492-72798477:+|nuORF	ENSG00000145741|ENST00000380591|BTF3	ENSG00000145741|ENST00000380591|BTF3	MULTI-MSMS	OvCa99_classI_Rep5	1	617.330322265625	2	617.329013	1232.64347	-0.46099	-0.00028459	0.1844	0.00011384	-0.27659	-0.00017075	617.3290660112436	54.11	0.65629	54.11	53.891	54.547	0					33	15	3	0	0	0	0.022034	1	4352	4352		145.46	22.253	1	1308500			22908	5243	18700	18723	25540	25540					0.03645691625956715
KETKDVSAL	9	Unmodified	_KETKDVSAL_					0	0	0		ENSG00000115946|ENST00000263657|PNO1	ENSG00000115946|ENST00000263657|PNO1	ENSG00000115946|ENST00000263657|PNO1	MSMS	OvCa99_classI_Rep5	1	495.7760925292969	2	495.776939	989.539325	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.678	1	36.678	36.178	37.178	0								0	0	0	0.16747	1	1952	1952		58.23	0.41864	1				22909	3140	18701	18724	25541	25541					0.04413732860757591
KETLAKAVL	9	Unmodified	_KETLAKAVL_					0	0	0		ENSG00000140848|ENST00000290776|CPNE2;nc|ENSG00000140848|Q96FN4-2|CPNE2;ENST00000565951.1_1_16:57181456-57181567:+|nuORF;ENST00000567011.1_1_16:57179810-57181567:+|nuORF	ENSG00000140848|ENST00000290776|CPNE2;ENST00000567011.1_1_16:57179810-57181567:+|nuORF	ENSG00000140848|ENST00000290776|CPNE2	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.7602844238281	2	486.808042	971.601532	-0.43633	-0.00021241	-0.42673	-0.00020774	-0.86306	-0.00042015	486.80775196919876	56.03	0.69377	56.03	55.804	56.498	0					25	16	3	0	0	0	0.027433	1	4608	4608		74.255	18.751	1	1256000			22910	4877;13856	18702	18725	25542	25542					0.11459503999742537
KETLIPLPIY	10	Unmodified	_KETLIPLPIY_					0	0	0		tr|A0A7D7A2X5|A0A7D7A2X5_9CLOTSporeproteaseYyaCOS=ClostridiumintestinaleOX=36845GN=yyaCPE=4SV=1	tr|A0A7D7A2X5|A0A7D7A2X5_9CLOTSporeproteaseYyaCOS=ClostridiumintestinaleOX=36845GN=yyaCPE=4SV=1	tr|A0A7D7A2X5|A0A7D7A2X5_9CLOTSporeproteaseYyaCOS=ClostridiumintestinaleOX=36845GN=yyaCPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.3165893554688	2	593.857732	1185.70091	2.328	0.0013825	-3.8903	-0.0023103	-1.5623	-0.00092779	593.8552800425218	82.471	0.51666	82.471	82.307	82.824	0					27	11	3	0	0	0	0.026994	1	8585	8585		32.812	4.7309	1	946400			22911	36094	18703	18726	25543	25543					0.11548901893866059
KETLKIDIL	9	Unmodified	_KETLKIDIL_					0	0	0		nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	MULTI-MSMS	OvCa99_classI_Rep5	1	536.83642578125	2	536.834257	1071.65396	1.8308	0.00098283	0.98026	0.00052624	2.8111	0.0015091	536.8347601952877	91.35	0.97791	91.35	90.816	91.794	0					44	23	3	0	0	0	0.046778	1	9829	9829		120.87	38.628	1	4566400			22912	6329	18704	18727	25544	25544					0.12100042342717643
KETLKIDIL	9	Unmodified	_KETLKIDIL_					0	0	0		nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	MULTI-MSMS	OvCa9_classI_Rep2	2	536.8330688476562	2	536.834257	1071.65396	-0.83923	-0.00045053	0.94	0.00050463	0.10077	5.4099E-05	536.8345319836833	93.353	1.1919	92.185	91.904	93.096	-1.168					58	22	4	0	0	0	0.11322	1	8329	8329		93.598	16.28	1	308800			22913	6329	18704	18727	25545	25545					0.12100042342717643
KETLKIDIL	9	Unmodified	_KETLKIDIL_					0	0	0		nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.8352661132812	2	536.834257	1071.65396	-1.4387	-0.00077233	1.2243	0.00065725	-0.21436	-0.00011508	536.8347283772092	94.848	1.3557	92.38	92.11	93.465	-2.4685					60	26	3	0	0	0	0.075543	1	8321	8321		104.06	32.179	1	298260			22914	6329	18704	18727	25546	25546					0.12100042342717643
KETLKIDIL	9	Unmodified	_KETLKIDIL_					0	0	0		nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	MULTI-MATCH	OvCa9_classI_Rep3	3		2	536.834257	1071.65396	0.41687	0.00022379	-0.51169	-0.00027469	-0.094824	-5.0905E-05	536.8338293063275	94.261	1.5631	92.365	92.052	93.615	-1.8956	0.055178	-0.0012171	NaN	104.06	67	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	294820			22915	6329	18704	18727							0.12100042342717643
KETLNYIVRTL	11	Unmodified	_KETLNYIVRTL_					0	0	0			REV__nc|ENSG00000125912|Q969V3-2|NCLN	REV__nc|ENSG00000125912|Q969V3-2|NCLN	MULTI-MSMS	OvCa9_classI_Rep2	2	450.59783935546875	3	450.59776	1348.77145	2.0912	0.00094228	-1.5871	-0.00071516	0.50403	0.00022712	450.59700338359727	73.597	2.3004	71.197	70.687	72.988	-2.3999					152	43	5	0	0	0	0.69589	1	6036	6036		31.068	1.5174	1	946140	+		22916	18759	18705	18728	25547	25547					0.11101575211500858
KETNDKAEL	9	Unmodified	_KETNDKAEL_					0	0	0		ENSG00000113141|ENST00000417647|IK;ENST00000515592.1_1_5:140041093-140041799:+|nuORF	ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	MULTI-MSMS	OvCa99_classI_Rep5	1	524.2689819335938	2	524.269478	1046.5244	-0.55996	-0.00029357	0.027124	1.422E-05	-0.53284	-0.00027935	524.2695218156268	30.062	0.69745	30.062	29.686	30.383	0					32	13	4	0	0	0	0.2784	1	1121	1121		65.465	9.0316	1	496120			22917	2950	18706	18729	25548	25548					0.0030024099276033667
KETNKNNTE	9	Unmodified	_KETNKNNTE_					0	0	0		nc|ENSG00000157765|O95436-2|SLC34A2	nc|ENSG00000157765|O95436-2|SLC34A2	nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-MSMS	OvCa99_classI_Rep5	1	539.2623901367188	2	539.262185	1076.50982	-0.37429	-0.00020184	-2.1431	-0.0011557	-2.5174	-0.0013575	539.2609259905364	51.657	0.70694	51.657	51.164	51.871	0					36	16	3	0	0	0	0.2077	1	4004	4004		75.043	0.78827	1	1496400			22918	15119	18707	18730	25549	25549					-0.02537831155382264
KETPDKVEL	9	Unmodified	_KETPDKVEL_					0	0	0		ENSG00000136045|ENST00000412830|PWP1;nc|ENSG00000136045|Q13610-2|PWP1	ENSG00000136045|ENST00000412830|PWP1	ENSG00000136045|ENST00000412830|PWP1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.7899169921875	2	529.790047	1057.56554	-0.85714	-0.0004541	0.17276	9.1525E-05	-0.68438	-0.00036258	529.7900986830991	50.134	0.96187	50.134	49.813	50.775	0					77	21	8	0	0	0	0.027568	1	3773	3773		138.06	19.319	1	9382800			22919	4451	18708	18731	25550	25550					0.03906002032226752
KETSLLRQS	9	Unmodified	_KETSLLRQS_					0	0	0		ENSG00000198707|ENST00000552810|CEP290	ENSG00000198707|ENST00000552810|CEP290	ENSG00000198707|ENST00000552810|CEP290	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.2669677734375	2	531.301113	1060.58767	-1.1343	-0.00060267	1.9047	0.001012	0.77037	0.0004093	531.3017761342211	34.563	0.51319	34.563	34.398	34.911	0					24	10	4	0	0	0	0.027462	1	1709	1709		14.137	3.8719	1	980820			22920	8851	18709	18732	25551	25551					0.059802265006510424
KETTYYDVL	9	Unmodified	_KETTYYDVL_					0	0	0		DNAJA1|p.T279Ifs*26|1|0.14|ENSG00000086061|chr9:33036651-33036651|C/-|frameshift_variant;nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1	DNAJA1|p.T279Ifs*26|1|0.14|ENSG00000086061|chr9:33036651-33036651|C/-|frameshift_variant	DNAJA1|p.T279Ifs*26|1|0.14|ENSG00000086061|chr9:33036651-33036651|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	566.2828979492188	2	566.282054	1130.54956	2.7447	0.0015543	-0.36568	-0.00020708	2.379	0.0013472	566.2817234820279	88.82	1.0083	88.82	88.508	89.516	0					55	24	4	0	0	0	0.11471	2	9475	9444;9475		93.195	20.316	1	7505000			22921	750	18710	18733	25552;25553	25553					-0.010497042046836214
KETTYYDVL	9	Unmodified	_KETTYYDVL_					0	0	0		DNAJA1|p.T279Ifs*26|1|0.14|ENSG00000086061|chr9:33036651-33036651|C/-|frameshift_variant;nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1	DNAJA1|p.T279Ifs*26|1|0.14|ENSG00000086061|chr9:33036651-33036651|C/-|frameshift_variant	DNAJA1|p.T279Ifs*26|1|0.14|ENSG00000086061|chr9:33036651-33036651|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.2824096679688	2	566.282054	1130.54956	0.34612	0.000196	-0.46577	-0.00026376	-0.11965	-6.7755E-05	566.281604925496	91.524	1.6263	88.981	88.449	90.076	-2.5425					91	31	4	0	0	0	0.2784	1	7918	7918		65.465	12.529	1	394860			22922	750	18710	18733	25554	25554					-0.010497042046836214
KEVAELTRL	9	Unmodified	_KEVAELTRL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.8167114257812	2	529.813856	1057.61316	0.39944	0.00021163	-0.99604	-0.00052772	-0.5966	-0.00031609	529.8132089893968	63.438	1.1542	63.438	63.14	64.294	0					64	28	4	0	0	0	0.13011	1	5701	5701		89.029	18.213	1	6027800			22923	3083	18711	18734	25555	25555					0.0866570102307378
KEVAELTRL	9	Unmodified	_KEVAELTRL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OvCa9_classI_Rep2	2	529.8138427734375	2	529.813856	1057.61316	-0.8287	-0.00043906	0.4904	0.00025982	-0.3383	-0.00017924	529.8139454363684	66.965	1.6318	64.304	63.9	65.532	-2.661					77	32	3	0	0	0	0.13849	1	5208	5208		86.882	14.002	1	368860			22924	3083	18711	18734	25556	25556					0.0866570102307378
KEVAELTRL	9	Unmodified	_KEVAELTRL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.8154907226562	2	529.813856	1057.61316	0.3412	0.00018077	-1.5871	-0.00084086	-1.2459	-0.00066009	529.8131708339678	67.832	1.5688	64.341	63.938	65.507	-3.4902					88	31	4	0	0	0	0.10421	2	5002	5002;5015		96.034	12.387	1	485150			22925	3083	18711	18734	25557;25558	25557					0.0866570102307378
KEVANSTANL	10	Unmodified	_KEVANSTANL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000171914|ENST00000636159|TLN2;TLN2|p.L2360Pfs*51|1|0.07|ENSG00000171914|chr15:62833577-62833578|-/T|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OvCa99_classI_Rep5	1	523.7766723632812	2	523.77747	1045.54039	-0.096286	-5.0432E-05	0.66653	0.00034911	0.57024	0.00029868	523.7773601151429	45.271	0.91211	45.271	44.977	45.89	0					54	20	4	0	0	0	0.11493	1	3113	3113		109.83	21.653	1	2435400			22926	4552;7248	18712	18735	25559	25559					0.019439472296653548
KEVANSTANL	10	Unmodified	_KEVANSTANL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000171914|ENST00000636159|TLN2;TLN2|p.L2360Pfs*51|1|0.07|ENSG00000171914|chr15:62833577-62833578|-/T|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	523.77747	1045.54039	-0.51326	-0.00026883	-6.57	-0.0034412	-7.0833	-0.0037101	523.7732534930606	48.193	0.19839	45.483	45.38	45.578	-2.7097	0.10617	-0.0060367	NaN	109.83	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6872.6			22927	4552;7248	18712	18735							0.019439472296653548
KEVAVLLDKND	11	Unmodified	_KEVAVLLDKND_					0	0	0		tr|A0A553SM30|A0A553SM30_NIACIIron-sulfurclusterassemblyaccessoryproteinOS=NialliacirculansOX=1397GN=CEQ21_21795PE=4SV=1	tr|A0A553SM30|A0A553SM30_NIACIIron-sulfurclusterassemblyaccessoryproteinOS=NialliacirculansOX=1397GN=CEQ21_21795PE=4SV=1	tr|A0A553SM30|A0A553SM30_NIACIIron-sulfurclusterassemblyaccessoryproteinOS=NialliacirculansOX=1397GN=CEQ21_21795PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	622.345947265625	2	622.34826	1242.68197	-2.1525	-0.0013396	2.0645	0.0012849	-0.087985	-5.4758E-05	622.3494484147533	118.64	1.3857	118.49	117.99	119.37	-0.14755					77	27	4	0	0	0	0.68709	1	11419	11419		34.087	2.4522	1	306460			22928	33791	18713	18736	25560	25560					0.07033320532150356
KEVDEDFDSKL	11	Unmodified	_KEVDEDFDSKL_					0	0	0		ENSG00000142634|ENST00000375980|EFHD2	ENSG00000142634|ENST00000375980|EFHD2	ENSG00000142634|ENST00000375980|EFHD2	MULTI-MSMS	OvCa99_classI_Rep5	1	442.2157287597656	3	442.213752	1323.61943	0.64265	0.00028419	-1.1746	-0.00051943	-0.53196	-0.00023524	442.2131940362663	67.796	0.54765	67.796	67.604	68.152	0					33	13	3	0	0	0	0.13636	1	6368	6368		89.356	25.93	1	1980000			22929	4987	18714	18737	25561	25561					-0.02943870326726028
KEVDGKSRDSL	11	Unmodified	_KEVDGKSRDSL_					0	0	0		ENSG00000162231|ENST00000294172|NXF1;ENST00000533440.1_1_11:62562405-62563999:-|nuORF	ENSG00000162231|ENST00000294172|NXF1	ENSG00000162231|ENST00000294172|NXF1	MULTI-MSMS	OvCa99_classI_Rep5	1	411.8858642578125	3	411.88597	1232.63608	0.58862	0.00024244	-0.80095	-0.0003299	-0.21233	-8.7456E-05	411.8856161403589	29.557	0.4479	29.557	29.387	29.835	0					22	8	3	0	0	0	0.67712	1	1068	1068		54.343	17.897	1	213670			22930	6163	18715	18738	25562	25562					0.029066753499364495
KEVEDLSATLL	11	Unmodified	_KEVEDLSATLL_					0	0	0		nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-MSMS	OvCa99_classI_Rep5	1	609.3358154296875	2	609.334818	1216.65508	-0.12641	-7.7025E-05	-0.59689	-0.00036371	-0.7233	-0.00044073	609.3343320943925	104.79	0.72751	104.79	104.41	105.13	0					43	16	3	0	0	0	0.21275	1	11744	11744		78.264	5.3845	1	2019800			22931	7732	18716	18739	25563	25563					0.05542211920965201
KEVEDLSATLL	11	Unmodified	_KEVEDLSATLL_					0	0	0		nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	609.334818	1216.65508	-0.8192	-0.00049917	-1.8054	-0.0011001	-2.6246	-0.0015993	609.3330872770654	105.43	0.74837	104.99	104.8	105.55	-0.43642	0.10562	-0.00083364	NaN	78.264	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16581			22932	7732	18716	18739							0.05542211920965201
KEVEDLSATLL	11	Unmodified	_KEVEDLSATLL_					0	0	0		nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-MATCH	OvCa9_classI_Rep3	3		2	609.334818	1216.65508	1.9987	0.0012179	-4.1643	-0.0025375	-2.1656	-0.0013196	609.3318328437181	106.16	0.5216	104.81	104.67	105.19	-1.3482	-0.075718	-0.0037084	NaN	78.264	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21699			22933	7732	18716	18739							0.05542211920965201
KEVEDLSATLL	11	Unmodified	_KEVEDLSATLL_					0	0	0		nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	609.334818	1216.65508	-0.64845	-0.00039512	-0.89187	-0.00054345	-1.5403	-0.00093857	609.333873472954	106.82	0.57103	104.95	104.49	105.07	-1.8784	0.061253	0.00027967	NaN	78.264	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22121			22934	7732	18716	18739							0.05542211920965201
KEVEEERKQHL	11	Unmodified	_KEVEEERKQHL_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	OvCa99_classI_Rep5	1	475.5879211425781	3	475.587924	1423.74194	-0.82323	-0.00039152	0.18031	8.5752E-05	-0.64292	-0.00030576	475.5880256119143	27.916	0.84768	27.916	27.691	28.539	0					29	16	2	0	0	0	0.53283	1	863	863		50.791	0	1	775720			22935	2975	18717	18740	25564	25564					0.04702011195377054
KEVEEISLL	9	Unmodified	_KEVEEISLL_					0	0	0		ENSG00000101361|ENST00000329276|NOP56;ENST00000494697.5_1_20:2633306-2634895:+|nuORF;ENST00000470143.1_1_20:2633306-2634188:+|nuORF	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	OvCa9_classI_Rep2	2	530.2987060546875	2	530.300247	1058.58594	-1.5885	-0.00084236	1.9014	0.0010083	0.31294	0.00016595	530.3012131218308	99.958	1.4879	99.127	98.666	100.15	-0.83052					62	29	4	0	0	0	0.055627	2	9131	9125;9131		115.49	16.865	1	407780			22936	2172	18718	18741	25565;25566	25566					0.05899172692056709
KEVEEISLL	9	Unmodified	_KEVEEISLL_					0	0	0		ENSG00000101361|ENST00000329276|NOP56;ENST00000494697.5_1_20:2633306-2634895:+|nuORF;ENST00000470143.1_1_20:2633306-2634188:+|nuORF	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	OvCa9_classI_Rep3	3	530.2994995117188	2	530.300247	1058.58594	-0.80786	-0.00042841	1.0223	0.00054212	0.21443	0.00011371	530.301047020851	100.77	1.9495	99.167	98.755	100.7	-1.6053					71	37	4	0	0	0	0.10502	2	6848	6848;6859		95.815	8.0609	1	580430			22937	2172	18718	18741	25567;25568	25567					0.05899172692056709
KEVEEISLL	9	Unmodified	_KEVEEISLL_					0	0	0		ENSG00000101361|ENST00000329276|NOP56;ENST00000494697.5_1_20:2633306-2634895:+|nuORF;ENST00000470143.1_1_20:2633306-2634188:+|nuORF	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.2999877929688	2	530.300247	1058.58594	-1.4533	-0.00077069	-0.12436	-6.5946E-05	-1.5777	-0.00083664	530.3004531187839	101.39	0.81617	99.125	98.792	99.609	-2.2665					55	16	5	0	0	0	0.045281	1	9098	9098		122.18	17.429	1	496790			22938	2172	18718	18741	25569	25569					0.05899172692056709
KEVEELEQL	9	Unmodified	_KEVEELEQL_					0	0	0		ENSG00000159840|ENST00000322764|ZYX;nc|ENSG00000159840|Q15942-2|ZYX	ENSG00000159840|ENST00000322764|ZYX	ENSG00000159840|ENST00000322764|ZYX	MULTI-MSMS	OvCa99_classI_Rep5	1	558.7939453125	2	558.792786	1115.57102	1.8263	0.0010205	0.13885	7.7591E-05	1.9652	0.0010981	558.7927490805134	79.259	1.2014	79.259	78.625	79.827	0					65	29	4	0	0	0	0.0070261	1	8063	8063		223.32	9.0901	1	11342000			22939	6030	18719	18742	25570	25570					0.017856808240594546
KEVEELEQL	9	Unmodified	_KEVEELEQL_					0	0	0		ENSG00000159840|ENST00000322764|ZYX;nc|ENSG00000159840|Q15942-2|ZYX	ENSG00000159840|ENST00000322764|ZYX	ENSG00000159840|ENST00000322764|ZYX	MULTI-MATCH	OvCa9_classI_Rep3	3		2	558.792786	1115.57102	-1.0488	-0.00058605	0.71404	0.000399	-0.33474	-0.00018705	558.7933486565478	81.751	1.2982	79.429	79.057	80.355	-2.3226	0.040499	0.00066744	NaN	223.32	70	25	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	398680			22940	6030	18719	18742							0.017856808240594546
KEVEGKIL	8	Unmodified	_KEVEGKIL_					0	0	0			REV__tr|A0A7D6VRR0|A0A7D6VRR0_9CLOTUvrABCsystemproteinAOS=ClostridiumintestinaleOX=36845GN=uvrAPE=3SV=1	REV__tr|A0A7D6VRR0|A0A7D6VRR0_9CLOTUvrABCsystemproteinAOS=ClostridiumintestinaleOX=36845GN=uvrAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.7701721191406	2	458.279118	914.543683	-0.088854	-4.072E-05	-0.82025	-0.0003759	-0.9091	-0.00041662	458.2785994986539	60.407	0.45037	60.407	60.195	60.646	0					19	10	3	0	0	0	0.028476	1	5268	5268		51.335	5.3835	1	485710	+		22941	31437	18720	18743	25571	25571					0.08299242074338053
KEVELERA	8	Unmodified	_KEVELERA_					0	0	0			REV__nc|ENSG00000189212|Q6NXN4|DPY19L2P1	REV__nc|ENSG00000189212|Q6NXN4|DPY19L2P1	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.3116760253906	2	487.269281	972.52401	-0.024743	-1.2056E-05	-1.4743	-0.00071839	-1.4991	-0.00073045	487.268509895741	31.988	0.39709	31.988	31.857	32.254	0					9	7	2	0	0	0	0.028476	1	1387	1387		58.782	0	1	28578	+		22942	29070	18721	18744	25572	25572					0.03664866063559202
KEVFKISDDES	11	Unmodified	_KEVFKISDDES_					0	0	0			REV__tr|A0A7D6ZGJ8|A0A7D6ZGJ8_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18950PE=4SV=1	REV__tr|A0A7D6ZGJ8|A0A7D6ZGJ8_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18950PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	432.2596130371094	3	432.882114	1295.62451	0.73213	0.00031693	-3.4386	-0.0014885	-2.7065	-0.0011716	432.88043287193574	57.789	0.759	54.444	54.24	54.999	-3.3449					26	14	3	0	0	0	0.025772	1	3770	3770		39.873	13.981	1	59942	+		22943	32003	18722	18745	25573	25573					-0.011475664641011463
KEVFLAQPV	9	Unmodified	_KEVFLAQPV_					0	0	0		ENST00000376007.8_1_6:31588511-31590634:+|nuORF	ENST00000376007.8_1_6:31588511-31590634:+|nuORF	ENST00000376007.8_1_6:31588511-31590634:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	515.8003540039062	2	515.800217	1029.58588	0.042157	2.1745E-05	-0.34096	-0.00017586	-0.2988	-0.00015412	515.7998502103903	88.114	1.1091	85.983	85.545	86.654	-2.1309					50	21	3	0	0	0	0.12515	1	5347	5347		90.37	18.492	1	513750			22944	11064	18723	18746	25574	25574					0.07227217482704873
KEVFLAQPV	9	Unmodified	_KEVFLAQPV_					0	0	0		ENST00000376007.8_1_6:31588511-31590634:+|nuORF	ENST00000376007.8_1_6:31588511-31590634:+|nuORF	ENST00000376007.8_1_6:31588511-31590634:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7998657226562	2	515.800217	1029.58588	-1.7137	-0.00088392	1.0925	0.00056351	-0.62119	-0.00032041	515.8005939236219	88.616	1.2917	86.013	85.781	87.073	-2.6027					52	25	3	0	0	0	0.22621	1	7588	7588		71.877	3.0906	1	441230			22945	11064	18723	18746	25575	25575					0.07227217482704873
KEVGEKAIL	9	Unmodified	_KEVGEKAIL_					0	0	0		tr|A0A7D6ZY59|A0A7D6ZY59_9CLOT[FeFe]hydrogenaseH-clusterradicalSAMmaturaseHydGOS=ClostridiumintestinaleOX=36845GN=hydGPE=4SV=1	tr|A0A7D6ZY59|A0A7D6ZY59_9CLOT[FeFe]hydrogenaseH-clusterradicalSAMmaturaseHydGOS=ClostridiumintestinaleOX=36845GN=hydGPE=4SV=1	tr|A0A7D6ZY59|A0A7D6ZY59_9CLOT[FeFe]hydrogenaseH-clusterradicalSAMmaturaseHydGOS=ClostridiumintestinaleOX=36845GN=hydGPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	493.7982177734375	2	493.797675	985.580796	-0.73808	-0.00036446	0.42036	0.00020757	-0.31772	-0.00015689	493.7976360204997	49.369	0.82697	49.369	48.986	49.813	0					44	18	4	0	0	0	0.1944	1	3698	3698		77.318	0.54344	1	1733900			22946	35909	18724	18747	25576	25576					0.08742913620108084
KEVGQAEGKL	10	Unmodified	_KEVGQAEGKL_					0	0	0		ENSG00000047597|ENST00000378616|XK	ENSG00000047597|ENST00000378616|XK	ENSG00000047597|ENST00000378616|XK	MSMS	OvCa99_classI_Rep5	1	529.793212890625	2	529.795663	1057.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.614	1	63.614	63.114	64.114	0								0	0	0	0.12657	1	5737	5737		58.246	3.4699	1				22947	1147	18725	18748	25577	25577					0.05028824126384279
KEVHLASH	8	Unmodified	_KEVHLASH_					0	0	0			REV__nc|ENSG00000145016|Q92622-3|RUBCN	REV__nc|ENSG00000145016|Q92622-3|RUBCN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	461.74432373046875	2	460.751059	919.487565	-0.7901	-0.00036404	-0.46284	-0.00021325	-1.2529	-0.0005773	460.7508919167908	117.12	1.0474	115.76	115.51	116.56	-1.3645					30	19	2	0	0	0	0.028476	1	10984	10984		40.778	3.6191	1	43643	+		22948	19947	18726	18749	25578	25578					0.0246003395752723
KEVIDSMVKN	10	Unmodified	_KEVIDSMVKN_					0	0	0		tr|A0A7D7A3B9|A0A7D7A3B9_9CLOTL(+)-tartratedehydratasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=HZF06_21095PE=3SV=1	tr|A0A7D7A3B9|A0A7D7A3B9_9CLOTL(+)-tartratedehydratasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=HZF06_21095PE=3SV=1	tr|A0A7D7A3B9|A0A7D7A3B9_9CLOTL(+)-tartratedehydratasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=HZF06_21095PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.8102416992188	2	581.810456	1161.60636	1.9131	0.0011131	-1.028	-0.0005981	0.88513	0.00051498	581.8101422660108	108.24	0.68509	108.24	107.99	108.67	0					24	15	2	0	0	0	0.02676	1	12211	12211		41.427	10.923	1	793380			22949	36112	18727	18750	25579	25579					0.03202020080220791
KEVILMRLN	9	Unmodified	_KEVILMRLN_					0	0	0			REV__ENSG00000129083|ENST00000439561|COPB1	REV__ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	OvCa99_classI_Rep5	1	558.327392578125	2	558.333901	1114.65325	-0.54663	-0.0003052	1.7662	0.00098613	1.2196	0.00068093	558.3343260363099	27.216	0.54863	27.216	27.043	27.591	0					26	10	4	0	0	0	0.65371	1	827	827		25.574	0	1	570040	+		22950	18885	18728	18751	25580	25580					0.10050924422012031
KEVKFLQRIKH	11	Unmodified	_KEVKFLQRIKH_					0	0	0		nc|ENSG00000160551|Q7L7X3-3|TAOK1	nc|ENSG00000160551|Q7L7X3-3|TAOK1	nc|ENSG00000160551|Q7L7X3-3|TAOK1	MULTI-MSMS	OvCa9_classI_Rep2	2	475.9603576660156	3	475.961144	1424.8616	-0.45243	-0.00021534	-0.005534	-2.634E-06	-0.45797	-0.00021797	475.961148400905	105.53	2.2396	105.1	104.7	106.94	-0.43642					127	44	4	0	0	0	0.72511	1	9817	9817		14.086	3.4992	1	485280			22951	15129	18729	18752	25581	25581					0.16616669330596778
KEVKLSPDN	9	Unmodified	_KEVKLSPDN_					0	0	0		nc|ENSG00000258659|Q9BYJ4-2|TRIM34;ENST00000491385.1_1_11:5653561-5662456:+|nuORF;ENSG00000258659|ENST00000429814|TRIM34	nc|ENSG00000258659|Q9BYJ4-2|TRIM34	nc|ENSG00000258659|Q9BYJ4-2|TRIM34	MULTI-MSMS	OvCa99_classI_Rep5	1	515.2808227539062	2	515.282389	1028.55022	-0.93848	-0.00048358	0.76152	0.0003924	-0.17696	-9.1186E-05	515.28268388989	34.043	0.85927	34.043	33.632	34.491	0					36	17	3	0	0	0	0.1944	1	1608	1608		77.318	6.0219	1	518060			22952	9481	18730	18753	25582	25582					0.03709135235044414
KEVKWLLE	8	Unmodified	_KEVKWLLE_					0	0	0			REV__ENSG00000206557|ENST00000383763|TRIM71	REV__ENSG00000206557|ENST00000383763|TRIM71	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.8114013671875	2	522.808042	1043.60153	-1.1792	-0.0006165	1.1142	0.00058252	-0.064999	-3.3982E-05	522.8082051638614	118.64	0.94326	118.49	118.18	119.13	-0.14755					23	18	2	0	0	0	0.028476	1	11431	11431		51.335	1.8939	1	157670	+		22953	23241	18731	18754	25583	25583					0.08147503999748551
KEVLFEEPI	9	Unmodified	_KEVLFEEPI_					0	0	0		tr|A0A553SHL1|A0A553SHL1_NIACIDNAgyrasesubunitBOS=NialliacirculansOX=1397GN=gyrBPE=3SV=1	tr|A0A553SHL1|A0A553SHL1_NIACIDNAgyrasesubunitBOS=NialliacirculansOX=1397GN=gyrBPE=3SV=1	tr|A0A553SHL1|A0A553SHL1_NIACIDNAgyrasesubunitBOS=NialliacirculansOX=1397GN=gyrBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.7938842773438	2	552.30279	1102.59103	0.03098	1.711E-05	1.6473	0.00090982	1.6783	0.00092693	552.8061298132984	66.641	0.83896	63.151	63.049	63.888	-3.4902					16	16	2	0	0	0	0.027462	1	4847	4847		20.947	0	1	64148			22954	33283	18732	18755	25584	25584					0.043834765546762355
KEVLHLGI	8	Unmodified	_KEVLHLGI_					0	0	0			REV__nc|ENSG00000101745|Q6UB98-2|ANKRD12	REV__nc|ENSG00000101745|Q6UB98-2|ANKRD12	MULTI-SECPEP	OvCa99_classI_Rep5	1	454.7651062011719	2	454.781828	907.549102	1.9967	0.00090808	-2.879	-0.0013093	-0.88229	-0.00040125	454.7806935246337	79.558	0.26787	79.558	79.436	79.704	0					10	6	2	0	0	0	0.028476	1	8134	8134		85.359	16.875	1	221370	+		22955	17515	18733	18756	25585	25585					0.09162965656810229
KEVLRRFVF	9	Unmodified	_KEVLRRFVF_					0	0	0			REV__ENST00000295206.6_1_2:119599779-119600037:-|nuORF	REV__ENST00000295206.6_1_2:119599779-119600037:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	597.3580322265625	2	597.361308	1192.70806	-5.0217	-0.0029997	0.45711	0.00027306	-4.5646	-0.0027267	597.3613502692024	157	0.93945	156.78	156.54	157.48	-0.22696					63	26	4	0	0	0	0.70177	1	15970	15970		17.365	0	1	80526	+		22956	24186	18734	18757	25586	25586					0.11941679284927886
KEVPVVHT	8	Unmodified	_KEVPVVHT_					0	0	0		nc|ENSG00000082397|Q9Y2J2-2|EPB41L3;nc|ENSG00000082397|Q9Y2J2-4|EPB41L3;ENSG00000082397|ENST00000341928|EPB41L3	nc|ENSG00000082397|Q9Y2J2-2|EPB41L3	nc|ENSG00000082397|Q9Y2J2-2|EPB41L3	MULTI-MSMS	OvCa99_classI_Rep5	1	454.76458740234375	2	454.763635	907.512717	2.0727	0.00094261	0.20451	9.3005E-05	2.2773	0.0010356	454.7636468337306	79.475	2.6153	79.475	79.16	81.776	0					183	63	4	0	0	0	0.62934	1	8254	8254		57.811	2.3071	1	26941000			22957	1677	18735	18758	25587	25587					0.055260887600866226
KEVQWEKL	8	Unmodified	_KEVQWEKL_					0	0	0		ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.8080444335938	2	530.295299	1058.57605	1.2199	0.00064689	-1.7401	-0.00092277	-0.52023	-0.00027588	530.2944220480119	120.81	0.35303	119.78	119.61	119.96	-1.0271					10	6	2	0	0	0	0.028476	1	9214	9214		51.335	3.6781	1	15976			22958	8469	18736	18759	25588	25588					0.049100294773325004
KEVRMPESN	9	Unmodified	_KEVRMPESN_					0	0	0		tr|A0A553STK5|A0A553STK5_NIACIExo-alpha-sialidaseOS=NialliacirculansOX=1397GN=CEQ21_05055PE=4SV=1	tr|A0A553STK5|A0A553STK5_NIACIExo-alpha-sialidaseOS=NialliacirculansOX=1397GN=CEQ21_05055PE=4SV=1	tr|A0A553STK5|A0A553STK5_NIACIExo-alpha-sialidaseOS=NialliacirculansOX=1397GN=CEQ21_05055PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	545.2722778320312	2	545.271498	1088.52844	-0.87004	-0.00047441	1.2477	0.00068032	0.37763	0.00020591	545.2720644615778	34.934	1.7301	34.934	34.209	35.939	0					73	36	3	0	0	0	0.18887	1	1666	1666		78.264	3.2205	1	638820			22959	34500	18737	18760	25589	25589					-0.012279927851750472
KEVTAAREAL	10	Unmodified	_KEVTAAREAL_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	MULTI-MSMS	OvCa99_classI_Rep5	1	544.3091430664062	2	544.308938	1086.60332	-0.41082	-0.00022361	0.079573	4.3312E-05	-0.33125	-0.0001803	544.3090135936649	42.731	0.51767	42.731	42.453	42.97	0					29	11	4	0	0	0	0.23547	1	2772	2772		89.029	3.868	1	945290			22960	2758	18738	18761	25590	25590					0.06348513017701407
KEVVHTVSL	9	Unmodified	_KEVVHTVSL_					0	0	0		nc|ENSG00000183207|Q9Y230-2|RUVBL2;ENST00000596247.5_1_19:49507512-49519096:+|nuORF;ENSG00000183207|ENST00000595090|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	OvCa99_classI_Rep5	1	506.297119140625	2	506.295299	1010.57605	-0.018766	-9.5013E-06	-0.54931	-0.00027811	-0.56807	-0.00028761	506.29487374567447	56.894	0.60245	56.894	56.662	57.264	0					23	13	3	0	0	0	0.10502	1	4754	4754		95.815	37.033	1	899610			22961	8057	18739	18762	25591	25591					0.0711802947733986
KEVVRRQEAG	10	Unmodified	_KEVVRRQEAG_					0	0	0		nc|ENSG00000171462|Q6UY11-2|DLK2;ENSG00000171462|ENST00000372488|DLK2	nc|ENSG00000171462|Q6UY11-2|DLK2	nc|ENSG00000171462|Q6UY11-2|DLK2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	586.2962036132812	2	586.330736	1170.64692	-0.58205	-0.00034128	-0.71756	-0.00042073	-1.2996	-0.00076201	586.3299206003762	39.361	0.64528	36.434	36.196	36.841	-2.9264					14	12	2	0	0	0	0.026522	1	1654	1654		65.465	19.493	1	28623			22962	7197	18740	18763	25592	25592					0.06842122514854054
KEVVRRQEAG	10	Unmodified	_KEVVRRQEAG_					0	0	0		nc|ENSG00000171462|Q6UY11-2|DLK2;ENSG00000171462|ENST00000372488|DLK2	nc|ENSG00000171462|Q6UY11-2|DLK2	nc|ENSG00000171462|Q6UY11-2|DLK2	MULTI-MATCH	OvCa99_classI_Rep5	1		2	586.330736	1170.64692	-1.0435	-0.00061186	-0.12057	-7.0694E-05	-1.1641	-0.00068255	586.3305874749158	36.51	0.31158	36.51	36.351	36.662	0	-0.015391	-0.00049295	NaN	65.465	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132530			22963	7197	18740	18763							0.06842122514854054
KEVVRRQEAG	10	Unmodified	_KEVVRRQEAG_					0	0	0		nc|ENSG00000171462|Q6UY11-2|DLK2;ENSG00000171462|ENST00000372488|DLK2	nc|ENSG00000171462|Q6UY11-2|DLK2	nc|ENSG00000171462|Q6UY11-2|DLK2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	586.330736	1170.64692	-1.0477	-0.00061432	1.1974	0.00070207	0.14966	8.7752E-05	586.3314926182355	39.342	0.2963	36.632	36.459	36.755	-2.7097	0.1065	0.0010526	NaN	65.465	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10924			22964	7197	18740	18763							0.06842122514854054
KEVVSLAKVL	10	Unmodified	_KEVVSLAKVL_					0	0	0		ENST00000374602.2_1_1:23735155-23745710:-|nuORF;nc|ENSG00000204219|O75764-2|TCEA3;TCEA3|p.G302Dfs*4|1|0.07|ENSG00000204219|chr1:23387333-23387334|GC/-|frameshift_variant;TCEA3|p.T304Hfs*3|1|0.09|ENSG00000204219|chr1:23387330-23387331|-/T|frameshift_variant;ENSG00000204219|ENST00000450454|TCEA3	ENST00000374602.2_1_1:23735155-23745710:-|nuORF	ENST00000374602.2_1_1:23735155-23745710:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	543.3511962890625	2	543.350074	1084.6856	0.053259	2.8938E-05	-0.17466	-9.4904E-05	-0.12141	-6.5966E-05	543.3498290889842	58.299	0.78531	58.299	58.027	58.812	0					48	18	4	0	0	0	0.36605	1	4938	4938		72.879	5.3856	1	2391700			22965	8957	18741	18764	25593	25593					0.14664035096643602
KEVYNKENL	9	Unmodified	_KEVYNKENL_					0	0	0		ENSG00000156804|ENST00000517956|FBXO32;ENST00000521719.5_1_8:124526414-124553254:-|nuORF;nc|ENSG00000156804|Q969P5-2|FBXO32;ENST00000520511.1_1_8:124539464-124553254:-|nuORF	ENSG00000156804|ENST00000517956|FBXO32	ENSG00000156804|ENST00000517956|FBXO32	MULTI-MSMS	OvCa99_classI_Rep5	1	568.8008422851562	2	568.800946	1135.58734	-0.52338	-0.0002977	0.017892	1.0177E-05	-0.50548	-0.00028752	568.8008928072788	40.135	0.91154	40.135	39.883	40.795	0					37	19	3	0	0	0	0.036986	1	2418	2418		129.42	3.6073	1	732480			22966	5858	18742	18765	25594	25594					0.02496806780800398
KEWAKSRMG	9	Unmodified	_KEWAKSRMG_					0	0	0			REV__ENST00000546388.1_1_12:56708586-56708889:-|nuORF	REV__ENST00000546388.1_1_12:56708586-56708889:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.785888671875	2	546.784576	1091.5546	-1.2902	-0.00070546	3.8637	0.0021126	2.5735	0.0014072	546.7866680087051	41.972	1.7543	38.992	38.388	40.142	-2.9804					103	30	5	0	0	0	0.44568	1	1898	1898		47.657	6.8792	1	751890	+		22967	27418	18743	18766	25595	25595					0.012483211769449554
KEWALEKEV	9	Unmodified	_KEWALEKEV_					0	0	0			REV__ENSG00000206530|ENST00000393845|CFAP44	REV__ENSG00000206530|ENST00000393845|CFAP44	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.3287353515625	2	566.305864	1130.59717	-0.22184	-0.00012563	2.7435	0.0015537	2.5217	0.001428	566.3069172858959	55.272	0.25016	55.272	55.064	55.315	0					9	5	2	0	0	0	0.027462	1	4508	4508		45.972	13.16	1	99969	+		22968	23240	18744	18767	25596	25596					0.03709994786186144
KEWDREILL	9	Unmodified	_KEWDREILL_					0	0	0		ENSG00000126947|ENST00000372829|ARMCX1	ENSG00000126947|ENST00000372829|ARMCX1	ENSG00000126947|ENST00000372829|ARMCX1	MULTI-MSMS	OvCa99_classI_Rep5	1	601.3331909179688	2	601.332413	1200.65027	2.615	0.0015725	-0.38093	-0.00022906	2.234	0.0013434	601.3321614739184	91.617	0.96435	91.617	91.296	92.26	0					73	22	5	0	0	0	0.035046	1	9866	9866		114.89	0	1	4548800			22969	3813	18745	18768	25597	25597					0.057973725688498234
KEWEKVFEM	9	Unmodified	_KEWEKVFEM_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	OvCa99_classI_Rep5	1	613.2976684570312	2	613.299724	1224.5849	2.4852	0.0015242	-0.13809	-8.4692E-05	2.3471	0.0014395	613.2994842852536	91.589	0.66534	91.589	91.255	91.92	0					34	15	3	0	0	0	0.35694	1	9890	9890		56.434	1.6575	1	1364700			22970	1548	18746	18769	25598	25598					-0.01841364948518276
KEWLKRNYLK	10	Unmodified	_KEWLKRNYLK_					0	0	0			REV__tr|A0A553SIM8|A0A553SIM8_NIACIGlycosyltransferasefamily2proteinOS=NialliacirculansOX=1397GN=CEQ21_15175PE=3SV=1	REV__tr|A0A553SIM8|A0A553SIM8_NIACIGlycosyltransferasefamily2proteinOS=NialliacirculansOX=1397GN=CEQ21_15175PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	460.2591552734375	3	459.938228	1376.79285	-0.42172	-0.00019396	-0.65279	-0.00030024	-1.0745	-0.00049421	460.2708161572526	58.219	0.25015	54.874	54.799	55.049	-3.3449					5	4	2	0	0	0	0.027006	1	3826	3826		5.6988	0	1	8998.4	+		22971	29909	18747	18770	25599	25599					0.11953005030864006
KEWNVGEQVL	10	Unmodified	_KEWNVGEQVL_					0	0	0		NYNRIN|p.D1830E|1|0.12|ENSG00000205978|chr14:24417239-24417239|C/G|missense_variant	NYNRIN|p.D1830E|1|0.12|ENSG00000205978|chr14:24417239-24417239|C/G|missense_variant	NYNRIN|p.D1830E|1|0.12|ENSG00000205978|chr14:24417239-24417239|C/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.1955261230469	3	401.211906	1200.61389	0.39369	0.00015795	-4.3365	-0.0017399	-3.9429	-0.0015819	401.2104090331575	34.429	0.94487	34.429	33.873	34.818	0					36	19	3	0	0	0	0.026916	1	1697	1697		51.528	7.877	1	51317			22972	15446	18748	18771	25600	25600					0.02160495672160323
KEWQSLND	8	Unmodified	_KEWQSLND_					0	0	0			REV__nc|ENSG00000112541|Q9Y233-1|PDE10A	REV__nc|ENSG00000112541|Q9Y233-1|PDE10A	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.7940368652344	2	510.243264	1018.47197	-0.20462	-0.0001044	-2.4779	-0.0012643	-2.6825	-0.0013687	510.2417157721851	40.806	0.62038	40.806	40.619	41.24	0					16	13	2	0	0	0	0.028476	1	2516	2516		62.107	14.45	1	57106	+		22973	18106	18749	18772	25601	25601					-0.036522973501973865
KEWRRKFREKY	11	Unmodified	_KEWRRKFREKY_					0	0	0		tr|A0A7D6ZZB9|A0A7D6ZZB9_9CLOTDUF2325domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05490PE=4SV=1	tr|A0A7D6ZZB9|A0A7D6ZZB9_9CLOTDUF2325domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05490PE=4SV=1	tr|A0A7D6ZZB9|A0A7D6ZZB9_9CLOTDUF2325domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05490PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	542.7734375	3	542.638953	1624.89503	-2.4011	-0.0013029	-0.49365	-0.00026788	-2.8947	-0.0015708	542.6386376997095	37.607	2.0237	34.898	34.436	36.459	-2.7097					106	40	4	0	0	0	0.026553	1	1759	1759		3.2113	0	1	96148			22974	35955	18750	18773	25602	25602					0.10757671102464883
KEWTGRLR	8	Unmodified	_KEWTGRLR_					0	0	0			REV__nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	REV__nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2847290039062	2	523.298707	1044.58286	-1.2018	-0.00062888	3.2207	0.0016854	2.0189	0.0010565	523.3013905931555	69.734	0.57896	69.734	69.552	70.13	0					25	13	3	0	0	0	0.028476	1	6686	6686		42.396	0	1	395750	+		22975	20590	18751	18774	25603	25603					0.06235387148558402
KEYEQSESSL	10	Unmodified	_KEYEQSESSL_					0	0	0		ENSG00000138658|ENST00000505019|ZGRF1;nc|ENSG00000138658|Q86YA3-3|ZGRF1;nc|ENSG00000138658|Q86YA3-6|ZGRF1;ENST00000514770.5_1_4:113532004-113549797:-|nuORF;nc|ENSG00000138658|Q86YA3-5|ZGRF1;ENST00000264370.9_1_4:113529030-113554332:-|nuORF;nc|ENSG00000138658|Q86YA3-4|ZGRF1	ENSG00000138658|ENST00000505019|ZGRF1	ENSG00000138658|ENST00000505019|ZGRF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.238037109375	3	400.519064	1198.53536	0.82929	0.00033215	1.1051	0.00044261	1.9344	0.00077476	400.51940261619285	43.474	0.42122	43.474	43.143	43.565	0					12	9	2	0	0	0	0.026956	1	2858	2858		6.001	0	1	59477			22976	4707	18752	18775	25604	25604					-0.05596401423599673
KEYIDAVN	8	Unmodified	_KEYIDAVN_					0	0	0			REV__tr|A0A7D6VU58|A0A7D6VU58_9CLOTTransketolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11235PE=4SV=1	REV__tr|A0A7D6VU58|A0A7D6VU58_9CLOTTransketolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11235PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	476.7634582519531	2	476.242732	950.470912	-0.64196	-0.00030573	-1.2877	-0.00061324	-1.9296	-0.00091897	476.24121512799854	37.508	0.1394	37.508	37.391	37.531	0					4	2	2	0	0	0	0.028476	1	2052	2052		29.15	0	1	11489	+		22977	31652	18753	18776	25605	25605					-0.006305117191004683
KEYIEQNLF	9	Unmodified	_KEYIEQNLF_					0	0	0		tr|A0A553ST58|A0A553ST58_NIACIAroMfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_04350PE=4SV=1	tr|A0A553ST58|A0A553ST58_NIACIAroMfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_04350PE=4SV=1	tr|A0A553ST58|A0A553ST58_NIACIAroMfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_04350PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	592.3025512695312	2	592.303321	1182.59209	-0.39133	-0.00023179	-3.4835	-0.0020633	-3.8748	-0.0022951	592.3012802476371	82.184	2.4178	79.501	79.156	81.574	-2.683					96	49	4	0	0	0	0.53483	1	6806	6806		39.253	2.0937	1	1637000			22978	34457	18754	18777	25606	25606					0.008096909235746352
KEYLLPDL	8	Unmodified	_KEYLLPDL_					0	0	0			REV__ENSG00000100949|ENST00000216840|RABGGTA	REV__ENSG00000100949|ENST00000216840|RABGGTA	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.77581787109375	2	495.778951	989.543348	-0.92079	-0.00045651	-3.6029	-0.0017862	-4.5237	-0.0022427	495.77701823175414	50.869	1.7239	47.696	47.153	48.877	-3.1734					75	33	4	0	0	0	0.40148	1	2973	2973		87.754	2.5935	1	828810	+		22979	17462	18755	18778	25607	25607					0.04815822354487409
KEYLTKVDKL	10	Unmodified	_KEYLTKVDKL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa99_classI_Rep5	1	412.91265869140625	3	412.911456	1235.71254	0.41764	0.00017245	-0.27038	-0.00011164	0.14725	6.0802E-05	412.911233444707	55.003	0.75473	55.003	54.805	55.559	0					44	17	4	0	0	0	0.21432	1	4471	4471		92.239	18.074	1	1594900			22980	4906	18756	18779	25608	25608					0.10411098917165873
KEYPPAHI	8	Unmodified	_KEYPPAHI_					0	0	0		ENSG00000074356|ENST00000389005|NCBP3	ENSG00000074356|ENST00000389005|NCBP3	ENSG00000074356|ENST00000389005|NCBP3	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.753173828125	2	477.75581	953.497067	-1.2756	-0.00060944	-3.1871	-0.0015227	-4.4627	-0.0021321	477.75406328346696	119.51	1.0433	118.17	117.83	118.88	-1.3444					27	19	2	0	0	0	0.73938	1	11225	11225		31.955	0	1	81841			22981	1510	18757	18780	25609	25609					0.01845802243030903
KEYPRLGNL	9	Unmodified	_KEYPRLGNL_					0	0	0		MSTB1_dup2996|chr10:87245512-87245766:-|1.021314454128529|0.377805891187829|1.43|428.0|16|3|anti-sense	MSTB1_dup2996|chr10:87245512-87245766:-|1.021314454128529|0.377805891187829|1.43|428.0|16|3|anti-sense	MSTB1_dup2996|chr10:87245512-87245766:-|1.021314454128529|0.377805891187829|1.43|428.0|16|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.3062133789062	2	545.306198	1088.59784	-0.29732	-0.00016213	-0.20095	-0.00010958	-0.49826	-0.00027171	545.3060086727559	38.801	1.3391	35.875	35.552	36.891	-2.9264					66	26	4	0	0	0	0.3249	1	1559	1559		60.118	3.3972	1	347080			22982	14841	18758	18781	25610	25610					0.057088342259021374
KEYSDDKVQL	10	Unmodified	_KEYSDDKVQL_					0	0	0		ING5|p.K135Rfs*25|1|0.15|ENSG00000168395|chr2:241711990-241712000|AGAAAGAAAAA/-|frameshift_variant;ENST00000492488.5_1_2:242641480-242651487:+|nuORF;ENST00000489509.1_1_2:242641480-242659033:+|nuORF;nc|ENSG00000168395|Q8WYH8-2|ING5;ENSG00000168395|ENST00000313552|ING5;ENST00000482774.5_1_2:242641480-242659534:+|nuORF	ING5|p.K135Rfs*25|1|0.15|ENSG00000168395|chr2:241711990-241712000|AGAAAGAAAAA/-|frameshift_variant	ING5|p.K135Rfs*25|1|0.15|ENSG00000168395|chr2:241711990-241712000|AGAAAGAAAAA/-|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	612.8108520507812	2	612.808968	1223.60338	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.38	1	54.38	53.88	54.88	0								0	0	0	0.035236	1	4386	4386		112.11	24.411	1				22983	6902	18759	18782	25611	25611					0.0005246822704521037
KEYTFDKLVLR	11	Unmodified	_KEYTFDKLVLR_					0	0	0			REV__tr|A0A7D7A1P8|A0A7D7A1P8_9CLOTUVDNAdamagerepairendonucleaseUvsEOS=ClostridiumintestinaleOX=36845GN=uvsEPE=4SV=1	REV__tr|A0A7D7A1P8|A0A7D7A1P8_9CLOTUVDNAdamagerepairendonucleaseUvsEOS=ClostridiumintestinaleOX=36845GN=uvsEPE=4SV=1	MSMS	OvCa9_classI_Rep4_	4	471.2715148925781	3	471.269643	1410.7871	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.179	1	18.84	18.34	19.34	-1.3386								0	0	0	0.19368	1	20	20		36.528	8.884	1		+		22984	32505	18760	18783	25612	25612					0.09813861728548545
KFAENGLTTH	10	Unmodified	_KFAENGLTTH_					0	0	0			REV__nc|ENSG00000196116|Q8NHU6-2|TDRD7	REV__nc|ENSG00000196116|Q8NHU6-2|TDRD7	MULTI-MSMS	OvCa9_classI_Rep3	3	559.2869873046875	2	559.285463	1116.55637	1.8335	0.0010255	1.1991	0.00067063	3.0326	0.0016961	559.285935160322	57.961	2.4261	54.834	53.92	56.346	-3.1264					105	62	3	0	0	0	0.74374	1	1734	1734		25.574	3.6142	1	45402	+		22985	22784	18761	18784	25613	25613					0.002756534665422805
KFAFDFFFF	9	Unmodified	_KFAFDFFFF_					0	0	0		ENST00000507765.1_1_4:6290695-6304192:+|nuORF;ENSG00000109501|ENST00000226760|WFS1	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	405.8668518066406	3	405.867299	1214.58007	3.0031	0.0012189	-3.8125	-0.0015474	-0.80938	-0.0003285	405.8656502294352	58.999	2.532	55.873	55.114	57.646	-3.1264					157	70	3	0	0	0	0.51865	6	1840	1840;1850;1868;1878;1882;1892		40.778	17.255	1	158560			22986	2716	18762	18785	25614;25615;25616;25617;25618;25619	25614					-0.018638810289758112
KFAFDFFFF	9	Unmodified	_KFAFDFFFF_					0	0	0		ENST00000507765.1_1_4:6290695-6304192:+|nuORF;ENSG00000109501|ENST00000226760|WFS1	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	405.8681335449219	3	405.867299	1214.58007	1.411	0.00057269	-2.2637	-0.00091878	-0.85272	-0.00034609	405.86628926350875	58.935	2.4312	55.543	55.101	57.532	-3.392					123	48	4	0	0	0	0.53483	1	3902	3902		39.253	0.49923	1	992190			22987	2716	18762	18785	25620	25620					-0.018638810289758112
KFAVGDYMS	9	Unmodified	_KFAVGDYMS_					0	0	0		tr|A0A7D6VNC1|A0A7D6VNC1_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12075PE=4SV=1	tr|A0A7D6VNC1|A0A7D6VNC1_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12075PE=4SV=1	tr|A0A7D6VNC1|A0A7D6VNC1_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12075PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	509.24066162109375	2	509.239135	1016.46372	1.5833	0.00080629	1.5319	0.00078011	3.1152	0.0015864	509.2399801613584	60.9	1.9539	57.832	56.783	58.737	-3.0685					78	52	2	0	0	0	0.61208	1	2091	2091		30.504	1.3541	1	24864			22988	34691	18763	18786	25621	25621					-0.043855675911686376
KFCRILINL	9	Unmodified	_KFCRILINL_					0	0	0			REV__nc|ENSG00000007202|Q14667-2|BLTP2	REV__nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.3236694335938	2	560.338987	1118.66342	2.0087	0.0011255	4.123	0.0023103	6.1316	0.0034358	560.3413224724114	138.56	0.43355	138.56	138.21	138.64	0					11	8	2	0	0	0	0.027462	1	16176	16176		27.882	0	1	24653	+		22989	16430	18764	18787	25622	25622					0.10883532147249753
KFDKIIKKLT	10	Unmodified	_KFDKIIKKLT_					0	0	0			REV__tr|A0A7D6VNC4|A0A7D6VNC4_9CLOTProbablelipidIIflippaseMurJOS=ClostridiumintestinaleOX=36845GN=murJPE=3SV=1	REV__tr|A0A7D6VNC4|A0A7D6VNC4_9CLOTProbablelipidIIflippaseMurJOS=ClostridiumintestinaleOX=36845GN=murJPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	617.3203125	2	617.400099	1232.78564	1.1198	0.0006914	-2.2871	-0.001412	-1.1672	-0.00072065	617.3988029623993	131.13	0.18842	131.13	131.06	131.25	0					6	3	2	0	0	0	0.027284	1	15225	15225		14.865	9.6447	1	31669	+		22990	31170	18765	18788	25623	25623					0.17856272430481113
KFESIQLLN	9	Unmodified	_KFESIQLLN_					0	0	0			REV__tr|A0A7D6VTE5|A0A7D6VTE5_9CLOTPTSsugartransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_07650PE=4SV=1	REV__tr|A0A7D6VTE5|A0A7D6VTE5_9CLOTPTSsugartransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_07650PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	546.3096923828125	2	546.308406	1090.60226	-0.23521	-0.0001285	-0.59029	-0.00032248	-0.8255	-0.00045098	546.3080854454435	51.187	1.6587	51.187	50.907	52.566	0					131	38	5	0	0	0	0.070405	1	3913	3913		107.01	0.32444	1	39933000	+		22991	31599	18766	18789	25624	25624					0.06058298648827076
KFGGKVLLQK	10	Unmodified	_KFGGKVLLQK_					0	0	0		tr|A0A7D6W1R7|A0A7D6W1R7_9CLOTGfo/Idh/MocAfamilyoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03705PE=4SV=1	tr|A0A7D6W1R7|A0A7D6W1R7_9CLOTGfo/Idh/MocAfamilyoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03705PE=4SV=1	tr|A0A7D6W1R7|A0A7D6W1R7_9CLOTGfo/Idh/MocAfamilyoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03705PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	559.3572998046875	2	559.358234	1116.70191	0.50754	0.0002839	-1.0575	-0.00059152	-0.54995	-0.00030762	559.3575350916004	97.322	1.4237	96.363	96.068	97.492	-0.95856					78	28	4	0	0	0	0.41408	1	8803	8803		66.429	4.3219	1	533000			22992	35415	18767	18790	25625	25625					0.1482316105341397
KFGHRGSNHP	10	Unmodified	_KFGHRGSNHP_					0	0	0		tr|A0A7D6ZPY2|A0A7D6ZPY2_9CLOTCarbamoylphosphatesynthasesmallchainOS=ClostridiumintestinaleOX=36845GN=carAPE=3SV=1;tr|A0A553SP66|A0A553SP66_NIACICarbamoylphosphatesynthasesmallchainOS=NialliacirculansOX=1397GN=carAPE=3SV=1	tr|A0A7D6ZPY2|A0A7D6ZPY2_9CLOTCarbamoylphosphatesynthasesmallchainOS=ClostridiumintestinaleOX=36845GN=carAPE=3SV=1	tr|A0A7D6ZPY2|A0A7D6ZPY2_9CLOTCarbamoylphosphatesynthasesmallchainOS=ClostridiumintestinaleOX=36845GN=carAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	568.7904052734375	2	568.789038	1135.56352	-0.3811	-0.00021676	-1.6336	-0.00092917	-2.0147	-0.0011459	568.7882846585493	54.574	0.60045	54.574	54.334	54.935	0					39	13	4	0	0	0	0.42962	1	4410	4410		64.207	0	1	1639600			22993	35694	18768	18791	25626	25626					0.0011643085765626893
KFGIHVAAVG	10	Unmodified	_KFGIHVAAVG_					0	0	0			REV__tr|A0A553SL68|A0A553SL68_NIACIDemethylmenaquinonemethyltransferaseOS=NialliacirculansOX=1397GN=menGPE=3SV=1	REV__tr|A0A553SL68|A0A553SL68_NIACIDemethylmenaquinonemethyltransferaseOS=NialliacirculansOX=1397GN=menGPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	499.7908020019531	2	499.792727	997.5709	-0.80544	-0.00040255	-3.7316	-0.001865	-4.5371	-0.0022676	499.7907834634341	28.56	0.39919	28.56	28.439	28.838	0					15	7	3	0	0	0	0.75594	1	956	956		24.203	0.68005	1	130930	+		22994	30193	18769	18792	25627	25627					0.07201770405367824
KFGPKLSDV	9	Unmodified	_KFGPKLSDV_					0	0	0			REV__ENSG00000206072|ENST00000544088|SERPINB11	REV__ENSG00000206072|ENST00000544088|SERPINB11	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.7859191894531	2	495.784567	989.554582	-0.29021	-0.00014388	0.3144	0.00015587	0.024191	1.1994E-05	495.7845150209093	83.045	0.78036	80.362	80.028	80.808	-2.6829					38	15	3	0	0	0	0.48047	1	6905	6905		44.377	3.599	1	372460	+		22995	23232	18770	18793	25628	25628					0.0593864444861083
KFHGAVVDH	9	Unmodified	_KFHGAVVDH_					0	0	0		tr|A0A553SF68|A0A553SF68_NIACIBeta-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_08375PE=3SV=1	tr|A0A553SF68|A0A553SF68_NIACIBeta-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_08375PE=3SV=1	tr|A0A553SF68|A0A553SF68_NIACIBeta-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_08375PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	505.26409912109375	2	505.264333	1008.51411	0.8595	0.00043427	-0.94134	-0.00047563	-0.081844	-4.1353E-05	505.26375901484937	29.367	1.0512	26.658	26.456	27.508	-2.7097					36	21	2	0	0	0	0.46377	1	693	693		45.952	5.3793	1	167190			22996	32998	18771	18794	25629	25629					0.010197228488550536
KFHHHKLTL	9	Unmodified	_KFHHHKLTL_					0	0	0		ENSG00000155026|ENST00000404406|RSPH10B;ENSG00000169402|ENST00000404077|RSPH10B2;nc|ENSG00000169402|B2RC85-2|RSPH10B2	ENSG00000155026|ENST00000404406|RSPH10B	ENSG00000155026|ENST00000404406|RSPH10B	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.799560546875	2	580.838	1159.66145	1.3893	0.00080698	-0.31605	-0.00018358	1.0733	0.00062341	580.8375544352328	92.177	0.50616	92.177	91.879	92.385	0					19	11	2	0	0	0	0.027462	1	9924	9924		34.173	14.176	1	342640			22997	5765	18772	18795	25630	25630					0.08800239453648828
KFHHNLIN	8	Unmodified	_KFHHNLIN_					0	0	0		tr|A0A7D6VVN3|A0A7D6VVN3_9CLOT1,4-alpha-glucanbranchingenzymeGlgBOS=ClostridiumintestinaleOX=36845GN=glgBPE=3SV=1	tr|A0A7D6VVN3|A0A7D6VVN3_9CLOT1,4-alpha-glucanbranchingenzymeGlgBOS=ClostridiumintestinaleOX=36845GN=glgBPE=3SV=1	tr|A0A7D6VVN3|A0A7D6VVN3_9CLOT1,4-alpha-glucanbranchingenzymeGlgBOS=ClostridiumintestinaleOX=36845GN=glgBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.8385009765625	2	511.780151	1021.54575	-0.21434	-0.00010969	2.2277	0.0011401	2.0134	0.0010304	511.78023630645316	76.096	1.3316	73.157	72.594	73.926	-2.9389					55	27	3	0	0	0	0.028476	1	6061	6061		42.474	7.2737	1	24513			22998	35227	18773	18796	25631	25631					0.0358371560280375
KFHKFALNLV	10	Unmodified	_KFHKFALNLV_					0	0	0			REV__ENSG00000075539|ENST00000358350|FRYL	REV__ENSG00000075539|ENST00000358350|FRYL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	406.923828125	3	406.244881	1215.71281	1.1987	0.00048698	-3.4394	-0.0013972	-2.2406	-0.00091025	406.2432974625039	20.746	0.34867	19.407	19.107	19.456	-1.3386					8	6	2	0	0	0	0.027253	1	66	66		20.03	0	1	8013	+		22999	16974	18774	18797	25632	25632					0.1135856342768875
KFHLIAPN	8	Unmodified	_KFHLIAPN_					0	0	0		nc|ENSG00000081014|Q9UPM8-2|AP4E1;ENSG00000081014|ENST00000261842|AP4E1	nc|ENSG00000081014|Q9UPM8-2|AP4E1	nc|ENSG00000081014|Q9UPM8-2|AP4E1	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.2721252441406	2	470.27417	938.533787	-0.8118	-0.00038177	-3.5054	-0.0016485	-4.3172	-0.0020303	470.2724357477648	146.54	1.4309	145.1	144.49	145.92	-1.4357					59	27	4	0	0	0	0.75241	1	14393	14393		25.45	2.4077	1	187810			23000	1648	18775	18798	25633	25633					0.06206098859604481
KFIDTTSKF	9	Unmodified	_KFIDTTSKF_					0	0	0		ENSG00000140986|ENST00000268661|RPL3L;ENST00000417615.1_1_14:99439218-99439536:-|nuORF;ENST00000473638.5_1_22:39708982-39709710:-|nuORF;ENSG00000100316|ENST00000216146|RPL3	ENSG00000140986|ENST00000268661|RPL3L	ENSG00000140986|ENST00000268661|RPL3L	MULTI-MSMS	OvCa99_classI_Rep5	1	543.7965087890625	2	543.795132	1085.57571	0.64678	0.00035172	-1.956	-0.0010637	-1.3092	-0.00071196	543.7943955452278	66.94	4.5337	66.94	66.575	71.109	0					335	112	6	0	0	0	0.0070154	11	6388	6210;6238;6268;6299;6329;6358;6388;6420;6461;6491;6522		209.21	78.179	1	365280000			23001	4886	18776	18799	25634;25635;25636;25637;25638;25639;25640;25641;25642;25643;25644	25640					0.03634609757477847
KFIELLKESA	10	Unmodified	_KFIELLKESA_					0	0	0			REV__tr|A0A7D7A250|A0A7D7A250_9CLOTGlutathionylspermidinesynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18215PE=4SV=1	REV__tr|A0A7D7A250|A0A7D7A250_9CLOTGlutathionylspermidinesynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18215PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3424072265625	2	589.344989	1176.67542	-3.0463	-0.0017953	-0.38122	-0.00022467	-3.4276	-0.00202	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.762	1	14865	14865		23.523	2.5758	1	272220	+		23002	32522	18777	18800	25645	25645					0.09415427371459373
KFIELLKESA	10	Unmodified	_KFIELLKESA_					0	0	0			REV__tr|A0A7D7A250|A0A7D7A250_9CLOTGlutathionylspermidinesynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18215PE=4SV=1	REV__tr|A0A7D7A250|A0A7D7A250_9CLOTGlutathionylspermidinesynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18215PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3433227539062	2	589.344989	1176.67542	-5.1334	-0.0030254	1.6192	0.00095427	-3.5142	-0.0020711	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.75313	1	12606	12606		24.519	1.9395	1	589610	+		23003	32522	18777	18800	25646	25646					0.09415427371459373
KFIILNWVAL	10	Unmodified	_KFIILNWVAL_					0	0	0			REV__ENSG00000137103|ENST00000643932|TMEM8B	REV__ENSG00000137103|ENST00000643932|TMEM8B	MULTI-SECPEP	OvCa9_classI_Rep3	3	405.91162109375	3	406.253265	1215.73797	2.22	0.00090187	4.089	0.0016612	6.3089	0.002563	406.58905691060545	64.765	0.45333	61.771	61.546	61.999	-2.9933					13	8	2	0	0	0	0.02717	1	2559	2559		30.318	9.4806	1	10536	+		23004	19435	18778	18801	25647	25647					0.13872618230288936
KFIILNWVAL	10	Unmodified	_KFIILNWVAL_					0	0	0			REV__ENSG00000137103|ENST00000643932|TMEM8B	REV__ENSG00000137103|ENST00000643932|TMEM8B	MULTI-MATCH	OvCa9_classI_Rep2	2		3	406.253265	1215.73797	0.74265	0.0003017	5.9929	0.0024346	6.7356	0.0027363	406.2556234216399	64.123	0.6298	61.399	61.128	61.758	-2.7245	-0.18625	0.00066583	NaN	30.318	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13575	+		23005	19435	18778	18801							0.13872618230288936
KFIKRWKTRYF	11	Unmodified	_KFIKRWKTRYF_					0	0	0		nc|ENSG00000197415|Q14D04-2|VEPH1;ENSG00000197415|ENST00000362010|VEPH1	nc|ENSG00000197415|Q14D04-2|VEPH1	nc|ENSG00000197415|Q14D04-2|VEPH1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.7246704101562	3	524.976906	1571.90889	-0.41294	-0.00021678	1.3975	0.00073365	0.98454	0.00051686	524.9767771476365	61.055	0.77214	61.055	60.602	61.374	0					19	17	2	0	0	0	0.026383	1	5345	5345		17.833	5.9008	1	158750			23006	8710	18779	18802	25648	25648					0.14580948601587806
KFILSTGSKIT	11	Unmodified	_KFILSTGSKIT_					0	0	0			REV__nc|ENSG00000189056|P78509-3|RELN	REV__nc|ENSG00000189056|P78509-3|RELN	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8563842773438	2	597.858264	1193.70197	-0.38237	-0.0002286	-2.7984	-0.0016731	-3.1808	-0.0019017	597.8564103488146	145.14	4.0194	143.71	141.51	145.53	-1.4357					229	77	4	0	0	0	0.71498	1	14107	14107		24.519	6.2571	1	217250	+		23007	22758	18780	18803	25649	25649					0.11287116262769814
KFIQNLTAK	9	Unmodified	_KFIQNLTAK_					0	0	0		tr|A0A553SUF6|A0A553SUF6_NIACIAminotransferaseOS=NialliacirculansOX=1397GN=CEQ21_06825PE=3SV=1	tr|A0A553SUF6|A0A553SUF6_NIACIAminotransferaseOS=NialliacirculansOX=1397GN=CEQ21_06825PE=3SV=1	tr|A0A553SUF6|A0A553SUF6_NIACIAminotransferaseOS=NialliacirculansOX=1397GN=CEQ21_06825PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8165893554688	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.6653	1	14063	14063		24.203	0	1	166960			23008	34604	18781	18804	25650	25650					0.09498308748311501
KFIRRWVH	8	Unmodified	_KFIRRWVH_					0	0	0		ENSG00000134452|ENST00000362091|FBH1;nc|ENSG00000134452|Q8NFZ0-2|FBH1	ENSG00000134452|ENST00000362091|FBH1	ENSG00000134452|ENST00000362091|FBH1	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.265380859375	2	571.34071	1140.66687	0.61413	0.00035088	0.52049	0.00029738	1.1346	0.00064826	571.3405715633329	81.188	0.75439	81.188	80.659	81.413	0					26	17	2	0	0	0	0.028476	1	8347	8347		40.573	0	1	432510			23009	4300	18782	18805	25651	25651					0.10215963036102949
KFIWTNHKF	9	Unmodified	_KFIWTNHKF_					0	0	0		NDUFA12|p.E122Dfs*10|1|0.03|ENSG00000184752|chr12:94971512-94971513|-/G|frameshift_variant;ENSG00000184752|ENST00000327772|NDUFA12;ENST00000538372.6_1_12:95365218-95388109:-|nuORF;ENST00000551991.5_1_12:95365218-95396553:-|nuORF	NDUFA12|p.E122Dfs*10|1|0.03|ENSG00000184752|chr12:94971512-94971513|-/G|frameshift_variant	NDUFA12|p.E122Dfs*10|1|0.03|ENSG00000184752|chr12:94971512-94971513|-/G|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	407.55828857421875	3	407.557348	1219.65021	1.8578	0.00075717	-1.9824	-0.00080796	-0.12462	-5.079E-05	407.55649609795455	66.873	1.104	66.873	66.619	67.723	0					75	27	4	0	0	0	0.075543	1	6215	6215		104.06	20.41	1	5525700			23010	8189	18783	18806	25652	25652					0.04917417359479259
KFKALAAF	8	Unmodified	_KFKALAAF_					0	0	0			REV__ENST00000601772.1_1_19:19035054-19035967:+|nuORF	REV__ENST00000601772.1_1_19:19035054-19035967:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	448.2775573730469	2	448.273638	894.532724	5.9919	0.002686	2.0705	0.00092813	8.0623	0.0036141	448.2744393122276	25.364	1.3734	22.654	22.379	23.752	-2.7097					68	30	4	0	0	0	0.74679	1	255	255		28.254	6.5519	1	341610	+		23011	17746	18784	18807	25653	25653					0.08123884490692035
KFKPIKFRSD	10	Unmodified	_KFKPIKFRSD_					0	0	0			REV__AHNAK2|p.F3808Sfs*30|1|0.04|ENSG00000185567|chr14:104944028-104944028|A/-|frameshift_variant	REV__AHNAK2|p.F3808Sfs*30|1|0.04|ENSG00000185567|chr14:104944028-104944028|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3699951171875	2	633.371872	1264.72919	-4.5141	-0.0028591	0.26314	0.00016666	-4.251	-0.0026925	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.7759	1	15630	15630		21.96	0	1	369460	+		23012	15581	18785	18808	25654	25654					0.10741644593804267
KFKPQKMR	8	Unmodified	_KFKPQKMR_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8165283203125	2	531.815679	1061.6168	-1.8698	-0.0009944	4.179	0.0022225	2.3092	0.0012281	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.75426	1	13760	13760		18.324	0.95945	1	166960			23013	4906	18786	18809	25655	25655					0.08846092315957321
KFKRKVVF	8	Unmodified	_KFKRKVVF_					0	0	0		tr|A0A7D6ZGZ9|A0A7D6ZGZ9_9CLOTDUF4230domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00770PE=4SV=1	tr|A0A7D6ZGZ9|A0A7D6ZGZ9_9CLOTDUF4230domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00770PE=4SV=1	tr|A0A7D6ZGZ9|A0A7D6ZGZ9_9CLOTDUF4230domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00770PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.322265625	2	526.342387	1050.67022	0.52942	0.00027865	-0.91804	-0.0004832	-0.38862	-0.00020455	526.3426722959395	132.29	0.37309	132.29	132.04	132.41	0					13	7	3	0	0	0	0.028476	1	15358	15358		31.955	20.444	1	38990			23014	35556	18787	18810	25656	25656					0.146912130901228
KFLALLVNL	9	Unmodified	_KFLALLVNL_					0	0	0		nc|ENSG00000020129|Q9UBB6-2|NCDN;ENSG00000020129|ENST00000373243|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	nc|ENSG00000020129|Q9UBB6-2|NCDN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7936401367188	2	515.836603	1029.65865	-1.0507	-0.000542	1.4276	0.0007364	0.37687	0.0001944	516.3391847348397	92.928	1.2117	90.421	89.959	91.171	-2.5072					35	24	2	0	0	0	0.027433	1	8122	8122		71.296	0	1	38457			23015	1020	18788	18811	25657	25657					0.14500971276152086
KFLLVHLLCR	10	Unmodified	_KFLLVHLLCR_					0	0	0			REV__ENST00000514949.1_1_5:122111158-122111338:+|nuORF	REV__ENST00000514949.1_1_5:122111158-122111338:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.59075927734375	3	414.589883	1240.74782	0.92323	0.00038276	2.2675	0.00094009	3.1907	0.0013228	414.5907458901833	32.76	2.0475	30.065	29.544	31.591	-2.6954					114	43	4	0	0	0	0.7855	1	856	856		20.837	0.80668	1	215500	+		23016	26992	18789	18812	25658	25658					0.13707482963991424
KFLNCAAIK	9	Unmodified	_KFLNCAAIK_					0	0	0		ENST00000430246.6_1_14:21702260-21731069:-|nuORF	ENST00000430246.6_1_14:21702260-21731069:-|nuORF	ENST00000430246.6_1_14:21702260-21731069:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.2408142089844	2	504.288963	1006.56337	2.1476	0.001083	1.7222	0.00086851	3.8699	0.0019515	504.79116856022773	77.098	0.29041	77.098	77.002	77.293	0					9	6	2	0	0	0	0.027448	1	7781	7781		44.117	0	1	66744			23017	11785	18790	18813	25659	25659					0.060352948134323015
KFLNLLPK	8	Unmodified	_KFLNLLPK_					0	0	0		tr|A0A553ST90|A0A553ST90_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04310PE=4SV=1	tr|A0A553ST90|A0A553ST90_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04310PE=4SV=1	tr|A0A553ST90|A0A553ST90_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04310PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	486.8138122558594	2	486.81567	971.616788	-0.51721	-0.00025178	-3.8731	-0.0018855	-4.3903	-0.0021373	486.8136606093423	57.145	2.3904	54.353	53.634	56.024	-2.792					128	47	4	0	0	0	0.57878	1	4084	4084		68.485	2.0554	1	495540			23018	34470	18791	18814	25660	25660					0.12984415587618514
KFLQLRFWGWW	11	Unmodified	_KFLQLRFWGWW_					0	0	0		nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.7762451171875	3	522.950468	1565.82957	-0.87741	-0.00045884	-0.74046	-0.00038722	-1.6179	-0.00084606	522.9499623845563	38.713	0.94622	38.713	38.161	39.107	0					49	20	3	0	0	0	0.026079	1	2227	2227		31.634	16.941	1	161750			23019	14857	18792	18815	25661	25661					0.06929301647437569
KFLRKAPM	8	Unmodified	_KFLRKAPM_					0	0	0		nc|ENSG00000131584|Q96P50-1|ACAP3;ENSG00000131584|ENST00000354700|ACAP3;nc|ENSG00000131584|Q96P50-4|ACAP3;ENST00000467278.5_1_1:1228946-1234134:-|nuORF	nc|ENSG00000131584|Q96P50-1|ACAP3	nc|ENSG00000131584|Q96P50-1|ACAP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.7707214355469	2	495.799497	989.584442	0.40033	0.00019848	-2.0229	-0.0010029	-1.6226	-0.00080446	495.7983926030961	81.168	0.66389	81.168	80.949	81.613	0					37	15	3	0	0	0	0.028476	1	8335	8335		37.028	15.069	1	1842500			23020	4076	18793	18816	25662	25662					0.08923304912957519
KFLTGVVCCK	10	Unmodified	_KFLTGVVCCK_					0	0	0			REV__ENSG00000106628|ENST00000610533|POLD2	REV__ENSG00000106628|ENST00000610533|POLD2	MULTI-MSMS	OvCa99_classI_Rep5	1	549.2962036132812	2	549.29593	1096.57731	2.0144	0.0011065	-1.7082	-0.0009383	0.30621	0.0001682	549.2946111818708	108.45	0.90292	108.45	107.99	108.89	0					28	20	2	0	0	0	0.71173	1	12260	12260		29.17	2.374	1	725280	+		23021	17815	18794	18817	25663	25663					0.03288204250225135
KFLTGVVCCK	10	Unmodified	_KFLTGVVCCK_					0	0	0			REV__ENSG00000106628|ENST00000610533|POLD2	REV__ENSG00000106628|ENST00000610533|POLD2	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	549.29593	1096.57731	2.0144	0.0011065	-1.7082	-0.0009383	0.30621	0.0001682	549.2946111818708	108.45	0.90292	108.45	107.99	108.89	0	0	0	NaN	29.17	28	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	725280	+		23022	17815	18794	18817							0.03288204250225135
KFNKLKRLDWL	11	Unmodified	_KFNKLKRLDWL_					0	0	0			REV__ENST00000539960.1_1_11:60665249-60666641:-|nuORF	REV__ENST00000539960.1_1_11:60665249-60666641:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.9587097167969	3	487.629394	1459.86635	-6.3714	-0.0031069	2.3965	0.0011686	-3.9748	-0.0019382	487.6306744276363	162.49	0.85275	160.86	160.54	161.39	-1.6239					38	23	2	0	0	0	0.026364	1	16095	16095		13.508	7.5069	1	15498	+		23023	17973	18795	18818	25664	25664					0.1548155347336433
KFNPVSFTW	9	Unmodified	_KFNPVSFTW_					0	0	0		ENSG00000124702|ENST00000326974|KLHDC3	ENSG00000124702|ENST00000326974|KLHDC3	ENSG00000124702|ENST00000326974|KLHDC3	MULTI-MSMS	OvCa99_classI_Rep5	1	563.2919921875	2	563.290017	1124.56548	1.7405	0.0009804	0.3003	0.00016916	2.0408	0.0011496	563.2899598291283	119.31	1.0387	119.31	119.05	120.09	0					56	24	4	0	0	0	0.023304	2	13704	13681;13704		143.11	55.353	1	2984500			23024	3673	18796	18819	25665;25666	25666					0.008180468229056714
KFPLQIVSI	9	Unmodified	_KFPLQIVSI_					0	0	0			REV__tr|A0A7D6VT22|A0A7D6VT22_9CLOTOligosacchariderepeatunitpolymeraseOS=ClostridiumintestinaleOX=36845GN=HZF06_18900PE=4SV=1	REV__tr|A0A7D6VT22|A0A7D6VT22_9CLOTOligosacchariderepeatunitpolymeraseOS=ClostridiumintestinaleOX=36845GN=HZF06_18900PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.8248291015625	2	522.826235	1043.63792	-1.2156	-0.00063554	-3.1403	-0.0016418	-4.3559	-0.0022774	522.824557169564	81.502	1.6045	78.791	78.199	79.804	-2.7106					115	32	5	0	0	0	0.28934	1	6721	6721		64.207	2.516	1	2410100	+		23025	31566	18797	18820	25667	25667					0.11784380896460789
KFPRKPPQFNP	11	Unmodified	_KFPRKPPQFNP_					0	0	0			REV__ENSG00000134440|ENST00000256854|NARS1	REV__ENSG00000134440|ENST00000256854|NARS1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.23089599609375	3	452.59094	1354.75099	-0.35096	-0.00015884	3.3416	0.0015124	2.9907	0.0013536	452.9268626735236	43.279	0.21032	40.271	40.168	40.378	-3.0074					6	3	2	0	0	0	0.026221	1	2060	2060		9.6461	0	1	8722.1	+		23026	19202	18798	18821	25668	25668					0.087804493423846
KFPSATSAILV	11	Unmodified	_KFPSATSAILV_					0	0	0			REV__tr|A0A7D6ZIS0|A0A7D6ZIS0_9CLOTThreoninesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05790PE=3SV=1	REV__tr|A0A7D6ZIS0|A0A7D6ZIS0_9CLOTThreoninesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05790PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3294067382812	2	567.331882	1132.64921	-3.474	-0.0019709	-0.21845	-0.00012393	-3.6925	-0.0020949	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.69455	1	12186	12186		31.53	1.0262	1	458690	+		23027	32068	18799	18822	25669	25669					0.08819158199935373
KFPSIQQL	8	Unmodified	_KFPSIQQL_					0	0	0		ENSG00000131944|ENST00000588258|FAAP24	ENSG00000131944|ENST00000588258|FAAP24	ENSG00000131944|ENST00000588258|FAAP24	MULTI-MSMS	OvCa99_classI_Rep5	1	480.7796630859375	2	480.779285	959.544017	0.17825	8.5701E-05	-0.1038	-4.9904E-05	0.074455	3.5796E-05	480.7790091456235	64.936	0.79772	64.936	64.71	65.507	0					31	19	2	0	0	0	0.59148	1	5924	5924		65.803	4.8312	1	1506500			23028	4100	18800	18823	25670	25670					0.06262661794187352
KFPSRASSGSP	11	Unmodified	_KFPSRASSGSP_					0	0	0		ENST00000375215.3_1_17:73629550-73630090:+|nuORF	ENST00000375215.3_1_17:73629550-73630090:+|nuORF	ENST00000375215.3_1_17:73629550-73630090:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	560.7894897460938	2	560.790912	1119.56727	0.076238	4.2753E-05	-0.37774	-0.00021183	-0.3015	-0.00016908	560.7906951341574	64.273	2.9179	61.548	60.968	63.886	-2.7245					181	56	6	0	0	0	0.5466	1	4864	4864		49.536	0	1	2758800			23029	11052	18801	18824	25671	25671					0.012270558408772558
KFPTYFCLLL	10	Unmodified	_KFPTYFCLLL_					0	0	0			REV__tr|A0A7D6ZHJ5|A0A7D6ZHJ5_9CLOTTranscriptionalregulatorYeiLOS=ClostridiumintestinaleOX=36845GN=yeiLPE=4SV=1	REV__tr|A0A7D6ZHJ5|A0A7D6ZHJ5_9CLOTTranscriptionalregulatorYeiLOS=ClostridiumintestinaleOX=36845GN=yeiLPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	622.8464965820312	2	622.841028	1243.6675	1.0226	0.0006369	4.4026	0.0027421	5.4252	0.003379	622.8435259204122	143.55	0.54579	143.55	143.27	143.81	0					27	10	3	0	0	0	0.45953	1	16780	16780		39.253	23.611	1	214630	+		23030	32028	18802	18825	25672	25672					0.05541576850305319
KFQPLFRE	8	Unmodified	_KFQPLFRE_					0	0	0			REV__ENSG00000111615|ENST00000229214|KRR1	REV__ENSG00000111615|ENST00000229214|KRR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.7573852539062	2	532.798009	1063.58147	-1.115	-0.00059408	-3.6567	-0.0019483	-4.7717	-0.0025424	532.7961612031323	58.118	1.7165	54.773	54.035	55.752	-3.3449					65	33	3	0	0	0	0.028476	1	3773	3773		38.806	7.2763	1	671090	+		23031	18040	18803	18826	25673	25673					0.052217530597772566
KFQPLFRE	8	Unmodified	_KFQPLFRE_					0	0	0			REV__ENSG00000111615|ENST00000229214|KRR1	REV__ENSG00000111615|ENST00000229214|KRR1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	532.798009	1063.58147	-1.6588	-0.00088381	-2.751	-0.0014657	-4.4098	-0.0023495	532.7965682868336	57.424	1.5943	54.632	53.931	55.525	-2.7921	-0.070719	0.00027764	NaN	38.806	81	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267670	+		23032	18040	18803	18826							0.052217530597772566
KFRDIVKGA	9	Unmodified	_KFRDIVKGA_					0	0	0			REV__tr|A0A553SGM7|A0A553SGM7_NIACICamSfamilysexpheromoneproteinOS=NialliacirculansOX=1397GN=CEQ21_11125PE=4SV=1	REV__tr|A0A553SGM7|A0A553SGM7_NIACICamSfamilysexpheromoneproteinOS=NialliacirculansOX=1397GN=CEQ21_11125PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3104248046875	2	517.311284	1032.60801	0.010128	5.2392E-06	-0.21635	-0.00011192	-0.20622	-0.00010668	517.3110169376656	31.938	1.2365	29.228	28.986	30.222	-2.7097					60	24	4	0	0	0	0.55588	1	1029	1029		37.159	1.5408	1	305470	+		23033	29721	18804	18827	25674	25674					0.09301441951151901
KFRDTIVV	8	Unmodified	_KFRDTIVV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.2494201660156	2	489.292559	976.570566	0.50638	0.00024777	-1.7285	-0.00084574	-1.2221	-0.00059798	489.2896919814666	66.861	0.11919	66.861	66.779	66.898	0					4	2	2	0	0	0	0.028476	1	6224	6224		30.504	1.3541	1	57028			23034	5793;36288	18805	18828	25675	25675					0.0813435068552053
KFRGESSVL	9	Unmodified	_KFRGESSVL_					0	0	0			REV__ENSG00000058335|ENST00000558480|RASGRF1	REV__ENSG00000058335|ENST00000558480|RASGRF1	MULTI-MSMS	OvCa9_classI_Rep2	2	511.7865905761719	2	511.785099	1021.55564	-0.34876	-0.00017849	4.273	0.0021869	3.9243	0.0020084	511.7870588089586	114.99	2.1752	114.87	114.5	116.68	-0.11777					99	43	4	0	0	0	0.33652	1	10947	10947		58.782	7.4465	1	358000	+		23035	16727	18806	18829	25676	25676					0.04572858817527958
KFRMLGYPN	9	Unmodified	_KFRMLGYPN_					0	0	0		SP4|p.P463Sfs*42|1|0.04|ENSG00000105866|chr7:21430550-21430551|-/CAGCGGCGATGGCTACAGAAGGAGGGAAA|frameshift_variant	SP4|p.P463Sfs*42|1|0.04|ENSG00000105866|chr7:21430550-21430551|-/CAGCGGCGATGGCTACAGAAGGAGGGAAA|frameshift_variant	SP4|p.P463Sfs*42|1|0.04|ENSG00000105866|chr7:21430550-21430551|-/CAGCGGCGATGGCTACAGAAGGAGGGAAA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.8441772460938	2	563.297319	1124.58008	1.3239	0.00074573	-0.74859	-0.00042168	0.57529	0.00032406	563.29629345908	116.62	0.41278	115.26	115.04	115.46	-1.3645					13	7	2	0	0	0	0.027462	1	10906	10906		30.504	6.3009	1	10476			23036	32915	18807	18830	25677	25677					0.022777956994104898
KFRREDRVMMQ	11	Unmodified	_KFRREDRVMMQ_					0	0	0			REV__nc|ENSG00000128595|O43852-11|CALU	REV__nc|ENSG00000128595|O43852-11|CALU	MULTI-SECPEP	OvCa9_classI_Rep2	2	499.27069091796875	3	499.258867	1494.75477	1.4279	0.00071291	0.5822	0.00029067	2.0101	0.0010036	499.2578411022712	88.15	1.5748	86.783	86.446	88.021	-1.3676					75	31	4	0	0	0	0.025995	1	7786	7786		29.551	6.9892	1	133040	+		23037	18862	18808	18831	25678	25678					0.027184277822470904
KFSFRKKKKK	10	Unmodified	_KFSFRKKKKK_					0	0	0			REV__ENSG00000277443|ENST00000612661|MARCKS	REV__ENSG00000277443|ENST00000612661|MARCKS	MULTI-MSMS	OvCa99_classI_Rep5	1	442.2909240722656	3	442.290713	1323.85031	0.27296	0.00012073	-0.31551	-0.00013955	-0.042548	-1.8819E-05	442.29046573666074	26.471	1.0007	26.471	26.042	27.043	0					50	19	4	0	0	0	0.49342	1	700	700		55.084	3.5562	1	329590	+		23038	23633	18809	18832	25679	25679					0.20133892027115508
KFSPRPLKF	9	Unmodified	_KFSPRPLKF_					0	0	0		nc|ENSG00000185658|Q9NSI6|BRWD1;BRWD1|p.E1531Dfs*2|1|0.06|ENSG00000185658|chr21:39200379-39200380|-/AA|frameshift_variant;BRWD1|p.V1635Wfs*6|1|0.05|ENSG00000185658|chr21:39199514-39199514|A/-|frameshift_variant;BRWD1|p.Q1709Mfs*18|1|0.17|ENSG00000185658|chr21:39199286-39199292|GCTCTGG/-|frameshift_variant;nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1	nc|ENSG00000185658|Q9NSI6|BRWD1	nc|ENSG00000185658|Q9NSI6|BRWD1	MULTI-MSMS	OvCa99_classI_Rep5	1	560.3380126953125	2	560.337301	1118.66005	0.71428	0.00040024	-0.68876	-0.00038594	0.025517	1.4298E-05	560.336763089626	62.351	0.73508	62.351	62.081	62.816	0					48	17	4	0	0	0	0.1804	1	5540	5540		79.713	7.8351	1	3918100			23039	15215	18810	18833	25680	25680					0.10546605364902462
KFSSEKRTKK	10	Unmodified	_KFSSEKRTKK_					0	0	0			REV__ENST00000470510.5_1_1:245912867-246021878:-|nuORF	REV__ENST00000470510.5_1_1:245912867-246021878:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.7040100097656	3	413.5787	1237.71427	0.24143	9.9848E-05	-0.26975	-0.00011156	-0.028321	-1.1713E-05	413.5784704267032	33.849	0.48242	33.849	33.583	34.065	0					13	9	2	0	0	0	0.027006	1	1568	1568		24.232	20.244	1	72267	+		23040	26261	18811	18834	25681	25681					0.10492152725782944
KFSTMPFLF	9	Unmodified	_KFSTMPFLF_					0	0	0		ENST00000467182.1_1_13:110813537-110815831:-|nuORF;ENSG00000187498|ENST00000375820|COL4A1	ENST00000467182.1_1_13:110813537-110815831:-|nuORF	ENST00000467182.1_1_13:110813537-110815831:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	559.2926635742188	2	559.291171	1116.56779	2.1196	0.0011855	0.2408	0.00013468	2.3604	0.0013202	559.2911256822126	138.15	1.2181	138.15	137.91	139.12	0					50	25	3	0	0	0	0.1804	1	16120	16120		79.713	26.776	1	408560			23041	8404	18812	18835	25682	25682					0.014167592363264703
KFTFLIVKRIW	11	Unmodified	_KFTFLIVKRIW_					0	0	0			REV__ENST00000367651.3_1_6:139693526-139693751:-|nuORF	REV__ENST00000367651.3_1_6:139693526-139693751:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	484.30242919921875	3	484.302619	1449.88603	2.4944	0.0012081	-3.5405	-0.0017147	-1.0461	-0.00050661	484.3009333284229	89.063	1.9387	89.063	88.76	90.698	0					154	47	5	0	0	0	0.70848	3	9474	9474;9504;9533		26.75	3.9473	1	47875000	+		23042	24904	18813	18836	25683;25684;25685	25683					0.1790792948413582
KFTFLIVKRIW	11	Unmodified	_KFTFLIVKRIW_					0	0	0			REV__ENST00000367651.3_1_6:139693526-139693751:-|nuORF	REV__ENST00000367651.3_1_6:139693526-139693751:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	484.6365661621094	3	484.302619	1449.88603	1.7065	0.00082645	-2.9344	-0.0014211	-1.2279	-0.00059468	484.3012098884703	125.42	1.112	125.42	125.07	126.18	0					67	26	4	0	0	0	0.70315	2	14491	14470;14491		28.577	10.744	1	649710	+		23043	24904	18813	18836	25686;25687	25687					0.1790792948413582
KFTGAGIL	8	Unmodified	_KFTGAGIL_					0	0	0		ENSG00000137168|ENST00000373699|PPIL1;PPIL1|p.G104Pfs*12|1|0.09|ENSG00000137168|chr6:36856004-36856005|-/GG|frameshift_variant;PPIL1|p.A103Vfs*28|1|0.08|ENSG00000137168|chr6:36856006-36856007|-/TGCACAGAGTTAAGAGGGCTGA|frameshift_variant	ENSG00000137168|ENST00000373699|PPIL1	ENSG00000137168|ENST00000373699|PPIL1	MULTI-MSMS	OvCa99_classI_Rep5	1	403.7431945800781	2	403.742171	805.469789	3.804	0.0015358	-0.78096	-0.00031531	3.023	0.0012205	403.74168690254487	86.224	1.3842	86.224	85.954	87.338	0					61	33	3	0	0	0	0.67745	1	9110	9110		47.916	0	1	3947000			23044	4563	18814	18837	25688	25688					0.05927318702674711
KFTPVASKF	9	Unmodified	_KFTPVASKF_					0	0	0		ENSG00000159840|ENST00000322764|ZYX;nc|ENSG00000159840|Q15942-2|ZYX;ENST00000446634.1_1_7:143080130-143081191:+|nuORF	ENSG00000159840|ENST00000322764|ZYX	ENSG00000159840|ENST00000322764|ZYX	MULTI-MSMS	OvCa99_classI_Rep5	1	512.7962036132812	2	512.794935	1023.57532	-0.5523	-0.00028322	-0.82913	-0.00042517	-1.3814	-0.00070839	512.7943436193117	61.722	1.532	61.722	61.245	62.777	0					92	36	4	0	0	0	0.017173	2	5453	5453;5484		150.36	45.615	1	8736700			23045	6030	18815	18838	25689;25690	25689					0.0644723482827203
KFVCFAKRY	9	Unmodified	_KFVCFAKRY_					0	0	0			REV__ENST00000402538.7_1_2:33789494-33789701:+|nuORF	REV__ENST00000402538.7_1_2:33789494-33789701:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	581.3179321289062	2	581.315512	1160.61647	2.164	0.001258	4.1048	0.0023862	6.2688	0.0036442	581.3176834919786	27.289	0.74899	24.579	24.362	25.111	-2.7097					31	17	3	0	0	0	0.7044	1	470	470		16.473	3.6614	1	30397	+		23046	25419	18816	18839	25691	25691					0.042586725960973126
KFVETHPEF	9	Unmodified	_KFVETHPEF_					0	0	0		nc|ENSG00000093072|Q9NZK5-2|ADA2;ENSG00000093072|ENST00000399837|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	MULTI-MSMS	OvCa99_classI_Rep5	1	567.2875366210938	2	567.284931	1132.55531	-0.36211	-0.00020542	-0.43781	-0.00024836	-0.79992	-0.00045378	567.2845471468767	65.406	0.75632	65.406	65.111	65.867	0					46	18	3	0	0	0	0.16524	1	6025	6025		82.305	23.523	1	7349500			23047	1907	18817	18840	25692	25692					-0.005665609023253637
KFVHVARVVYQ	11	Unmodified	_KFVHVARVVYQ_					0	0	0			REV__ENSG00000170633|ENST00000361234|RNF34	REV__ENSG00000170633|ENST00000361234|RNF34	MULTI-SECPEP	OvCa9_classI_Rep2	2	448.9249267578125	3	449.262823	1344.76664	4.3972	0.0019755	-2.2219	-0.0009982	2.1753	0.00097729	449.26177507793597	28.49	1.1888	25.781	25.592	26.781	-2.7097					32	25	2	0	0	0	0.026221	1	594	594		19.263	3.2559	1	49638	+		23048	21554	18818	18841	25693	25693					0.10804735859414905
KFVLKKLKLF	10	Unmodified	_KFVLKKLKLF_					0	0	0		ENST00000587994.5_1_18:47322196-47323846:-|nuORF	ENST00000587994.5_1_18:47322196-47323846:-|nuORF	ENST00000587994.5_1_18:47322196-47323846:-|nuORF	MSMS	OvCa9_classI_Rep3	3	632.4326171875	2	632.431202	1262.84785	NaN	NaN	NaN	NaN	NaN	NaN	NaN	164.55	1	163.14	162.64	163.64	-1.4083								0	0	0	0.29049	1	14354	14354		3.6843	0.27433	1				23049	14072	18819	18842	25694	25694					0.22694043569435962
KFVLWTSPLL	10	Unmodified	_KFVLWTSPLL_					0	0	0		ENST00000488164.5_1_9:74970965-74971010:-|nuORF	ENST00000488164.5_1_9:74970965-74971010:-|nuORF	ENST00000488164.5_1_9:74970965-74971010:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.8758239746094	3	401.909387	1202.70633	0.77949	0.00031328	-0.10868	-4.3681E-05	0.67081	0.0002696	401.9092128935219	59.756	0.73939	59.756	59.34	60.079	0					36	18	3	0	0	0	0.026803	1	5154	5154		47.96	22.385	1	654650			23050	12661	18820	18843	25695	25695					0.1130862547634024
KFVTARPDSIT	11	Unmodified	_KFVTARPDSIT_					0	0	0			REV__tr|A0A7D6ZN31|A0A7D6ZN31_9CLOTCitratesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14425PE=3SV=1	REV__tr|A0A7D6ZN31|A0A7D6ZN31_9CLOTCitratesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14425PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	412.23126220703125	3	412.231189	1233.67174	1.934	0.00079726	-0.68164	-0.00028099	1.2524	0.00051626	412.2308161483838	65.879	3.828	62.933	62.452	66.28	-2.9459					181	75	4	0	0	0	0.71191	1	2711	2711		22.562	0	1	1016400	+		23051	32115	18821	18844	25696	25696					0.06424757597551434
KFVTVQATF	9	Unmodified	_KFVTVQATF_					0	0	0		ENSG00000125730|ENST00000245907|C3;C3|p.Y686Cfs*19|1|0.14|ENSG00000125730|chr19:6707264-6707265|-/AC|frameshift_variant	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	OvCa99_classI_Rep5	1	520.793701171875	2	520.792392	1039.57023	1.1151	0.00058073	1.1402	0.00059378	2.2552	0.0011745	520.7927392561832	92.405	1.2126	92.405	92.092	93.305	0					62	28	4	0	0	0	0.040625	2	9976	9976;10002		126.24	16.123	1	4996700			23052	3725	18822	18845	25697;25698	25697					0.05202930965651831
KFVVVSMLD	9	Unmodified	_KFVVVSMLD_					0	0	0			REV__ENSG00000111647|ENST00000279907|BLTP3B	REV__ENSG00000111647|ENST00000279907|BLTP3B	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.2855224609375	2	519.288628	1036.5627	-1.9387	-0.0010067	-2.1853	-0.0011348	-4.1239	-0.0021415	519.2873108396527	126.9	0.89249	125.47	125.24	126.14	-1.4357					22	17	2	0	0	0	0.59259	1	12109	12109		32.812	4.9302	1	55929	+		23053	18043	18823	18846	25699	25699					0.045884553737323586
KFWKRLQYEMP	11	Unmodified	_KFWKRLQYEMP_					0	0	0		ENSG00000169306|ENST00000378993|IL1RAPL1	ENSG00000169306|ENST00000378993|IL1RAPL1	ENSG00000169306|ENST00000378993|IL1RAPL1	MULTI-MSMS	OvCa9_classI_Rep3	3	509.2718811035156	3	509.27099	1524.79114	0.77642	0.00039541	0.43065	0.00021932	1.2071	0.00061472	509.2711434456893	66.676	1.6117	63.788	63.477	65.089	-2.8873					96	31	5	0	0	0	0.72477	1	2777	2777		18.531	0	1	276460			23054	7000	18824	18847	25700	25700					0.04973627950607806
KFYDKLVRRLI	11	Unmodified	_KFYDKLVRRLI_					0	0	0			REV__ENST00000526890.5_1_11:3050224-3063461:-|nuORF	REV__ENST00000526890.5_1_11:3050224-3063461:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	484.3015441894531	3	484.301278	1449.882	1.7065	0.00082645	-0.16564	-8.0219E-05	1.5408	0.00074623	484.3012098884703	125.42	1.112	125.42	125.07	126.18	0					67	26	4	0	0	0	0.72466	1	14518	14518		20.03	9.4437	1	649710	+		23055	17990	18825	18848	25701	25701					0.17505839990394634
KFYEFFPFL	9	Unmodified	_KFYEFFPFL_					0	0	0			REV__L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|201|1|anti-sense	REV__L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|201|1|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	413.21441650390625	3	413.214587	1236.62193	0.32327	0.00013358	-0.89263	-0.00036885	-0.56936	-0.00023527	413.2141626191826	29.064	0.54825	29.064	28.838	29.387	0					26	10	4	0	0	0	0.60342	1	1004	1004		31.53	1.2121	1	177320	+		23056	28369	18826	18849	25702	25702					0.013086746595718068
KFYKKGNQPK	10	Unmodified	_KFYKKGNQPK_					0	0	0			REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.7462564563017426|0.2188578600898351|3.0|428.0|9|1|sense	REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.7462564563017426|0.2188578600898351|3.0|428.0|9|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	619.346435546875	2	619.356222	1236.69789	0.70522	0.00043678	-1.3089	-0.00081066	-0.60364	-0.00037387	619.3553399165137	151.16	0.66	151.16	150.84	151.5	0					28	12	3	0	0	0	0.027165	1	17675	17675		20.947	6.0821	1	141400	+		23057	28439	18827	18850	25703	25703					0.08901071559694174
KFYNEIPT	8	Unmodified	_KFYNEIPT_					0	0	0		tr|A0A7D6VRY2|A0A7D6VRY2_9CLOTPyruvate:ferredoxinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=nifJPE=3SV=1	tr|A0A7D6VRY2|A0A7D6VRY2_9CLOTPyruvate:ferredoxinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=nifJPE=3SV=1	tr|A0A7D6VRY2|A0A7D6VRY2_9CLOTPyruvate:ferredoxinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=nifJPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.27362060546875	2	506.260925	1010.5073	0.13937	7.0559E-05	-3.5336	-0.0017889	-3.3942	-0.0017183	506.25901668891987	62.751	0.84704	62.751	62.253	63.1	0					42	20	4	0	0	0	0.028476	1	5617	5617		33.516	0	1	1405600			23058	34964	18828	18851	25704	25704					0.0024636517761109644
KGAAFELCQL	10	Unmodified	_KGAAFELCQL_					0	0	0		nc|ENSG00000144852|O75469-5|NR1I2;nc|ENSG00000144852|O75469-2|NR1I2;nc|ENSG00000144852|O75469-4|NR1I2;nc|ENSG00000144852|O75469-6|NR1I2;ENSG00000144852|ENST00000393716|NR1I2;nc|ENSG00000144852|O75469-3|NR1I2;nc|ENSG00000144852|O75469-7|NR1I2	nc|ENSG00000144852|O75469-5|NR1I2	nc|ENSG00000144852|O75469-5|NR1I2	MULTI-SECPEP	OvCa9_classI_Rep2	2	540.7683715820312	2	540.281334	1078.54812	0.19856	0.00010728	2.3495	0.0012694	2.5481	0.0013767	540.2827539561886	41.616	0.88702	38.906	38.635	39.522	-2.7097					26	17	2	0	0	0	0.026942	1	2200	2200		32.751	13.391	1	39216			23059	5188	18829	18852	25705	25705					0.01198383225573707
KGAAKHGM	8	Unmodified	_KGAAKHGM_					0	0	0			REV__MFHAS1|p.V624Pfs*59|1|0.13|ENSG00000147324|chr8:8891193-8891194|-/GA|frameshift_variant	REV__MFHAS1|p.V624Pfs*59|1|0.13|ENSG00000147324|chr8:8891193-8891194|-/GA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.23052978515625	2	400.215798	798.417042	1.4188	0.00056781	-4.1056	-0.0016431	-2.6868	-0.0010753	400.2141295890623	30.707	0.79058	30.707	30.285	31.076	0					17	15	2	0	0	0	0.028476	1	1231	1231		26.796	0	1	82795	+		23060	28665	18830	18853	25706	25706					0.00977037368204492
KGAAQREFH	9	Unmodified	_KGAAQREFH_					0	0	0		ENSG00000151729|ENST00000281456|SLC25A4	ENSG00000151729|ENST00000281456|SLC25A4	ENSG00000151729|ENST00000281456|SLC25A4	MULTI-MSMS	OvCa99_classI_Rep5	1	522.2702026367188	2	522.27269	1042.53083	2.1127	0.0011034	-1.4248	-0.00074414	0.68791	0.00035928	522.2718783942921	75.557	1.1121	75.557	75.046	76.158	0					51	27	3	0	0	0	0.40667	1	7528	7528		51.335	0	1	4538800			23061	5579	18831	18854	25707	25707					0.01126223734809173
KGADAKRKKG	10	Unmodified	_KGADAKRKKG_					0	0	0			REV__ENST00000261249.6_1_14:61438965-61439184:-|nuORF	REV__ENST00000261249.6_1_14:61438965-61439184:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	530.8165283203125	2	529.825089	1057.63563	0.32598	0.00017271	3.3834	0.0017926	3.7094	0.0019653	529.8267755432784	71.043	1.5962	68.324	67.957	69.553	-2.7196					73	31	4	0	0	0	0.026782	1	3428	3428		45.972	0	1	262800	+		23062	23942	18832	18855	25708	25708					0.10911345211366097
KGAEILIH	8	Unmodified	_KGAEILIH_					0	0	0		tr|A0A553SKR3|A0A553SKR3_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_19165PE=4SV=1	tr|A0A553SKR3|A0A553SKR3_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_19165PE=4SV=1	tr|A0A553SKR3|A0A553SKR3_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_19165PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	440.76739501953125	2	440.766178	879.517802	3.0752	0.0013554	-0.42642	-0.00018795	2.6488	0.0011675	440.76579968786945	79.499	1.7915	79.499	79.202	80.993	0					85	43	3	0	0	0	0.7043	1	8119	8119		42.474	7.2737	1	2142300			23063	33644	18833	18856	25709	25709					0.07322392622711504
KGAEPIGQV	9	Unmodified	_KGAEPIGQV_					0	0	0			REV__ENSG00000092929|ENST00000207549|UNC13D	REV__ENSG00000092929|ENST00000207549|UNC13D	MULTI-MSMS	OvCa99_classI_Rep5	1	449.754150390625	2	449.753267	897.491981	0.3476	0.00015633	-0.4114	-0.00018503	-0.0638	-2.8694E-05	449.75298117295125	61.045	0.81261	61.045	60.73	61.542	0					40	18	4	0	0	0	0.13504	1	5351	5351		87.696	4.946	1	1870300	+		23064	17271	18834	18857	25710	25710					0.03913498380427427
KGAGKAPLN	9	Unmodified	_KGAGKAPLN_					0	0	0		FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant;FLNB|p.S2513Rfs*5|1|0.04|ENSG00000136068|chr3:58169710-58169711|-/GATTC|frameshift_variant;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;FLNB|p.T1593Ifs*40|1|0.08|ENSG00000136068|chr3:58136084-58136085|-/TCTATCAAGTC|frameshift_variant;nc|ENSG00000136068|O75369-7|FLNB;FLNB|p.L1100Ffs*93|1|0.04|ENSG00000136068|chr3:58123263-58123263|C/-|frameshift_variant	FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant	FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	427.26666259765625	2	428.255977	854.497401	0.50222	0.00021508	-0.67873	-0.00029067	-0.17651	-7.5591E-05	428.25559403303475	68.876	1.0344	65.386	64.867	65.901	-3.4902					32	20	2	0	0	0	0.027462	1	5134	5134		27.882	9.5578	1	93735			23065	4455	18835	18858	25711	25711					0.06433221962890912
KGAGKAPLN	9	Unmodified	_KGAGKAPLN_					0	0	0		FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant;FLNB|p.S2513Rfs*5|1|0.04|ENSG00000136068|chr3:58169710-58169711|-/GATTC|frameshift_variant;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;FLNB|p.T1593Ifs*40|1|0.08|ENSG00000136068|chr3:58136084-58136085|-/TCTATCAAGTC|frameshift_variant;nc|ENSG00000136068|O75369-7|FLNB;FLNB|p.L1100Ffs*93|1|0.04|ENSG00000136068|chr3:58123263-58123263|C/-|frameshift_variant	FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant	FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	428.255977	854.497401	-1.4079	-0.00060294	3.4892	0.0014943	2.0813	0.00089133	428.2565939458914	68.057	1.7327	65.396	64.892	66.624	-2.661	0.0048481	0.0024095	NaN	27.882	51	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20736			23066	4455	18835	18858							0.06433221962890912
KGAGNPGILGY	11	Unmodified	_KGAGNPGILGY_					0	0	0			REV__tr|A0A7D6ZTT5|A0A7D6ZTT5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12435PE=4SV=1	REV__tr|A0A7D6ZTT5|A0A7D6ZTT5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12435PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.3031616210938	2	523.785099	1045.55564	-1.1368	-0.00059545	-4.1022	-0.0021487	-5.239	-0.0027441	523.7827100574015	26.167	0.44973	26.167	25.992	26.442	0					13	8	3	0	0	0	0.025909	1	673	673		19.997	0	1	56889	+		23067	32209	18836	18859	25712	25712					0.03468858817518594
KGAGPPGDLD	10	Unmodified	_KGAGPPGDLD_					0	0	0			REV__ENSG00000165879|ENST00000371021|FRAT1	REV__ENSG00000165879|ENST00000371021|FRAT1	MULTI-SECPEP	OvCa9_classI_Rep2	2	462.7615966796875	2	463.732532	925.45051	0.178	8.2543E-05	-0.32311	-0.00014984	-0.14511	-6.7293E-05	463.7322339446113	79.346	1.2279	77.606	77.048	78.276	-1.7398					37	23	2	0	0	0	0.026734	1	6689	6689		24.519	0	1	66939	+		23068	21131	18837	18860	25713	25713					-0.015196823789210612
KGAIRCKFA	9	Unmodified	_KGAIRCKFA_					0	0	0			REV__ENST00000560827.5_3_15:56536467-56665671:+|nuORF	REV__ENST00000560827.5_3_15:56536467-56665671:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.8047790527344	2	497.286754	992.558955	0.069086	3.4356E-05	-3.0161	-0.0014999	-2.947	-0.0014655	497.28451431922457	57.526	0.42225	57.526	57.396	57.818	0					17	9	3	0	0	0	0.027462	1	4844	4844		38.806	20.482	1	256810	+		23069	27307	18838	18861	25714	25714					0.062378303905234134
KGALNDLTA	9	Unmodified	_KGALNDLTA_					0	0	0		tr|A0A553SU37|A0A553SU37_NIACIUPF0033domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06155PE=3SV=1	tr|A0A553SU37|A0A553SU37_NIACIUPF0033domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06155PE=3SV=1	tr|A0A553SU37|A0A553SU37_NIACIUPF0033domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06155PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.7618408203125	2	451.750724	901.486896	0.82042	0.00037063	-1.9154	-0.00086529	-1.095	-0.00049466	451.7496666365927	61.716	1.54	58.258	57.816	59.356	-3.4577					69	31	4	0	0	0	0.027462	1	4381	4381		47.657	7.0847	1	774740			23070	34564	18839	18862	25715	25715					0.03221194517789172
KGALNDLTA	9	Unmodified	_KGALNDLTA_					0	0	0		tr|A0A553SU37|A0A553SU37_NIACIUPF0033domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06155PE=3SV=1	tr|A0A553SU37|A0A553SU37_NIACIUPF0033domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06155PE=3SV=1	tr|A0A553SU37|A0A553SU37_NIACIUPF0033domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06155PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	451.750724	901.486896	1.0245	0.00046281	-1.6457	-0.00074343	-0.62119	-0.00028062	451.74981951006174	61.131	1.1503	58.369	57.984	59.134	-2.7624	0.055073	0.00011149	NaN	39.253	40	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163290			23071	34564	18839	18862							0.03221194517789172
KGALRGYV	8	Unmodified	_KGALRGYV_					0	0	0		nc|ENSG00000166750|Q08AF3-2|SLFN5;ENSG00000166750|ENST00000299977|SLFN5	nc|ENSG00000166750|Q08AF3-2|SLFN5	nc|ENSG00000166750|Q08AF3-2|SLFN5	MULTI-SECPEP	OvCa9_classI_Rep2	2	432.5955505371094	2	432.25852	862.502486	-0.82588	-0.00035699	0.73329	0.00031697	-0.092588	-4.0022E-05	432.25875446660893	57.249	1.4951	54.457	54.03	55.525	-2.7921					48	29	3	0	0	0	0.028476	1	4157	4157		33.516	15.191	1	71511			23072	6707	18840	18863	25716	25716					0.06573525825513116
KGAPGIFGLKG	11	Unmodified	_KGAPGIFGLKG_					0	0	0		ENSG00000134871|ENST00000360467|COL4A2	ENSG00000134871|ENST00000360467|COL4A2	ENSG00000134871|ENST00000360467|COL4A2	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.7933349609375	2	522.813659	1043.61277	-0.85753	-0.00044833	-1.9131	-0.0010002	-2.7706	-0.0014485	522.8128445688127	38.841	0.17723	38.841	38.75	38.927	0					6	3	2	0	0	0	0.025638	1	2238	2238		45.972	14.017	1	20323			23073	4341	18841	18864	25717	25717					0.09270326093906078
KGAPRRGQK	9	Unmodified	_KGAPRRGQK_					0	0	0		ENSG00000070193|ENST00000264664|FGF10	ENSG00000070193|ENST00000264664|FGF10	ENSG00000070193|ENST00000264664|FGF10	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.28857421875	2	499.304324	996.594095	0.50646	0.00025288	1.9178	0.00095754	2.4242	0.0012104	499.30529986015955	74.387	0.19205	74.387	74.249	74.441	0					5	4	2	0	0	0	0.027462	1	7344	7344		11.511	4.7755	1	178060			23074	1422	18842	18865	25718	25718					0.0956620924271192
KGAPSPIRSA	10	Unmodified	_KGAPSPIRSA_					0	0	0			REV__ENST00000431373.1_1_6:30853540-30859007:+|nuORF	REV__ENST00000431373.1_1_6:30853540-30859007:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	492.28515625	2	492.285266	982.555979	-4.5363	-0.0022332	4.3023	0.002118	-0.23399	-0.00011519	492.28737227483106	149.34	1.4054	148.39	148.05	149.46	-0.95119					58	27	4	0	0	0	0.64697	1	12648	12648		36.447	0.82846	1	182000	+		23075	25719	18843	18866	25719	25719					0.06400278537375925
KGAQCPVPAL	10	Unmodified	_KGAQCPVPAL_					0	0	0		ENST00000590288.1_3_17:74483988-74497434:-|nuORF	ENST00000590288.1_3_17:74483988-74497434:-|nuORF	ENST00000590288.1_3_17:74483988-74497434:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.2721862792969	2	492.27077	982.526987	0.60486	0.00029776	2.4391	0.0012007	3.044	0.0014985	492.2720128221692	38.355	2.6605	35.428	35.156	37.817	-2.9264					142	52	5	0	0	0	0.64063	1	1569	1569		37.159	0	1	4917900			23076	14102	18844	18867	25720	25720					0.03502417916718059
KGAQRLREEAI	11	Unmodified	_KGAQRLREEAI_					0	0	0			REV__nc|ENSG00000145715|P20936-2|RASA1	REV__nc|ENSG00000145715|P20936-2|RASA1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	424.2590026855469	3	424.245721	1269.71533	-0.94289	-0.00040002	0.4982	0.00021136	-0.44469	-0.00018866	424.24565417749795	54.468	1.2819	51.22	50.568	51.85	-3.2474					43	24	3	0	0	0	0.025722	1	3437	3437		27.644	3.4121	1	67049	+		23077	19978	18845	18868	25721	25721					0.09126367094722809
KGASKTLKAL	10	Unmodified	_KGASKTLKAL_					0	0	0		tr|A0A553SMQ8|A0A553SMQ8_NIACIFormate-dependentphosphoribosylglycinamideformyltransferaseOS=NialliacirculansOX=1397GN=purTPE=3SV=1	tr|A0A553SMQ8|A0A553SMQ8_NIACIFormate-dependentphosphoribosylglycinamideformyltransferaseOS=NialliacirculansOX=1397GN=purTPE=3SV=1	tr|A0A553SMQ8|A0A553SMQ8_NIACIFormate-dependentphosphoribosylglycinamideformyltransferaseOS=NialliacirculansOX=1397GN=purTPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.762451171875	2	508.826766	1015.63898	0.10171	5.1755E-05	-2.0827	-0.0010597	-1.981	-0.001008	508.8256406219834	32.429	0.24928	32.429	32.303	32.553	0					10	4	3	0	0	0	0.026714	1	1424	1424		35.152	3.6222	1	175840			23078	33863	18846	18869	25722	25722					0.13178595265389959
KGCEKYEN	8	Carbamidomethyl (C)	_KGC(Carbamidomethyl (C))EKYEN_	KGC(1)EKYEN		KGC(41)EKYEN		0	1	0			REV__ENSG00000196172|ENST00000402377|ZNF681	REV__ENSG00000196172|ENST00000402377|ZNF681	MULTI-MSMS	OvCa99_classI_Rep5	1	514.228271484375	2	514.229299	1026.44404	1.0186	0.0005238	-1.9763	-0.0010163	-0.95768	-0.00049247	514.2279720400894	138.94	0.53284	138.94	138.74	139.27	0					17	10	2	0	0	0	0.71369	1	16237	16237		40.573	10.069	1	44076	+		23079	22794	18847	18870	25723	25723	267				-0.06811943601951498
KGCEKYEN	8	Carbamidomethyl (C)	_KGC(Carbamidomethyl (C))EKYEN_					0	1	0			REV__ENSG00000196172|ENST00000402377|ZNF681	REV__ENSG00000196172|ENST00000402377|ZNF681	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	514.229299	1026.44404	1.0186	0.0005238	-1.9763	-0.0010163	-0.95768	-0.00049247	514.2279720400894	138.94	0.53284	138.94	138.74	139.27	0	0.058623	-0.0016163	NaN	40.573	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44076	+		23080	22794	18847	18870			267				-0.06811943601951498
KGCEKYEN	8	Carbamidomethyl (C)	_KGC(Carbamidomethyl (C))EKYEN_					0	1	0			REV__ENSG00000196172|ENST00000402377|ZNF681	REV__ENSG00000196172|ENST00000402377|ZNF681	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.229299	1026.44404	-0.84906	-0.00043661	1.6772	0.00086247	0.82815	0.00042586	514.2299305934574	139.18	0.54218	138.95	138.86	139.4	-0.22696	0.073365	0.0021412	NaN	40.573	11	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7280	+		23081	22794	18847	18870			267				-0.06811943601951498
KGCIKCEAPCP	11	Unmodified	_KGCIKCEAPCP_					0	0	0		ENSG00000236279|ENST00000422142|CLEC2L	ENSG00000236279|ENST00000422142|CLEC2L	ENSG00000236279|ENST00000422142|CLEC2L	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.8263549804688	2	574.76668	1147.51881	0.61986	0.00035628	-2.7494	-0.0015803	-2.1296	-0.001224	574.7657745279478	81.434	0.24284	81.434	81.329	81.572	0					7	5	2	0	0	0	0.025528	1	8389	8389		35.152	5.982	1	173630			23082	9311	18848	18871	25724	25724					-0.04905220386581277
KGCRLRSSSLG	11	Unmodified	_KGCRLRSSSLG_					0	0	0			REV__ENST00000542513.1_1_12:11047683-11047866:-|nuORF	REV__ENST00000542513.1_1_12:11047683-11047866:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	582.3204345703125	2	582.319314	1162.62407	-0.57765	-0.00033638	0.96235	0.0005604	0.3847	0.00022402	582.3198349087545	46.184	1.2882	43.474	43.25	44.538	-2.7097					71	25	4	0	0	0	0.41398	1	2761	2761		60.118	3.6845	1	264480	+		23083	27384	18849	18872	25725	25725					0.04926780125720143
KGCYSVPVK	9	Unmodified	_KGCYSVPVK_					0	0	0			REV__ENSG00000163833|ENST00000338040|FBXO40	REV__ENSG00000163833|ENST00000338040|FBXO40	MULTI-MSMS	OvCa99_classI_Rep5	1	490.76507568359375	2	490.76532	979.516088	2.3682	0.0011622	-3.7187	-0.001825	-1.3505	-0.00066278	490.76344912320974	94.518	0.64108	94.518	94.22	94.861	0					26	14	3	0	0	0	0.48047	1	10296	10296		44.377	5.571	1	614550	+		23084	20900	18850	18873	25726	25726					0.02551015542451296
KGCYSVPVK	9	Unmodified	_KGCYSVPVK_					0	0	0			REV__ENSG00000163833|ENST00000338040|FBXO40	REV__ENSG00000163833|ENST00000338040|FBXO40	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	490.76532	979.516088	2.3682	0.0011622	-3.7187	-0.001825	-1.3505	-0.00066278	490.76344912320974	94.518	0.64108	94.518	94.22	94.861	0	0	0	NaN	44.377	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	614550	+		23085	20900	18850	18873							0.02551015542451296
KGDIKLFH	8	Unmodified	_KGDIKLFH_					0	0	0			REV__ENSG00000280969|ENST00000629237|RPS4Y2	REV__ENSG00000280969|ENST00000629237|RPS4Y2	MULTI-MSMS	OvCa9_classI_Rep2	2	479.277099609375	2	479.279452	956.544351	-1.3781	-0.00066051	-2.7764	-0.0013307	-4.1545	-0.0019912	479.2778548190663	50.558	1.983	47.764	47.232	49.215	-2.794					76	39	3	0	0	0	0.7224	1	3259	3259		38.806	0	1	369850	+		23086	23660	18851	18874	25727	25727					0.06434081514032641
KGDVTVSLISD	11	Unmodified	_KGDVTVSLISD_					0	0	0			REV__ENSG00000119203|ENST00000238112|CPSF3	REV__ENSG00000119203|ENST00000238112|CPSF3	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.79296875	2	567.306061	1132.59757	-0.38333	-0.00021747	-0.54505	-0.00030921	-0.92838	-0.00052668	567.3057591686091	39.415	0.59604	39.415	39.287	39.883	0					26	13	3	0	0	0	0.025528	1	2303	2303		35.152	14.205	1	642070	+		23087	18429	18852	18875	25728	25728					0.03657369715392633
KGEILRHVE	9	Unmodified	_KGEILRHVE_					0	0	0			REV__ENSG00000171368|ENST00000360578|TPPP	REV__ENSG00000171368|ENST00000360578|TPPP	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.7359619140625	2	540.811648	1079.60874	0.68981	0.00037306	-4.392	-0.0023753	-3.7022	-0.0020022	540.8091574922003	140.63	0.52745	140.63	140.35	140.88	0					15	10	2	0	0	0	0.027462	1	16416	16416		14.137	0	1	20382	+		23088	21610	18853	18876	25729	25729					0.07212236600184951
KGEKSKEKL	9	Unmodified	_KGEKSKEKL_					0	0	0		tr|A0A553SGR4|A0A553SGR4_NIACI5-oxoprolinasesubunitPxpBOS=NialliacirculansOX=1397GN=pxpBPE=4SV=1	tr|A0A553SGR4|A0A553SGR4_NIACI5-oxoprolinasesubunitPxpBOS=NialliacirculansOX=1397GN=pxpBPE=4SV=1	tr|A0A553SGR4|A0A553SGR4_NIACI5-oxoprolinasesubunitPxpBOS=NialliacirculansOX=1397GN=pxpBPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	523.8131103515625	2	523.813856	1045.61316	-0.59076	-0.00030945	0.54149	0.00028364	-0.049277	-2.5812E-05	523.8140622984237	60.4	1.7337	57.629	57.032	58.766	-2.7702					76	29	4	0	0	0	0.3249	1	4434	4434		60.118	7.1816	1	237300			23089	33185	18854	18877	25730	25730					0.0921770102308983
KGELQNGFEV	10	Unmodified	_KGELQNGFEV_					0	0	0			REV__ENSG00000170260|ENST00000335870|ZNF212	REV__ENSG00000170260|ENST00000335870|ZNF212	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.2672729492188	2	560.785296	1119.55604	2.9962	0.0016802	-1.2349	-0.00069253	1.7613	0.00098771	560.7845385870994	86.796	0.66341	86.796	86.553	87.216	0					21	15	2	0	0	0	0.026646	1	9157	9157		70.816	39.286	1	441690	+		23090	21524	18855	18878	25731	25731					0.0010423374671972852
KGEPILSTI	9	Unmodified	_KGEPILSTI_					0	0	0		ENSG00000197565|ENST00000334504|COL4A6;nc|ENSG00000197565|Q14031|COL4A6	ENSG00000197565|ENST00000334504|COL4A6	ENSG00000197565|ENST00000334504|COL4A6	MULTI-SECPEP	OvCa9_classI_Rep3	3	480.2745056152344	2	479.2844	956.554247	-0.16558	-7.936E-05	1.3963	0.00066923	1.2307	0.00058987	479.28633467568227	94.848	1.8063	92.953	92.153	93.96	-1.8956					75	35	3	0	0	0	0.027462	1	6163	6163		25.574	0	1	141180			23091	8723	18856	18879	25732	25732					0.0742322472875685
KGESLQPSDSL	11	Unmodified	_KGESLQPSDSL_					0	0	0			REV__nc|ENSG00000147874|Q7Z4H7-2|HAUS6	REV__nc|ENSG00000147874|Q7Z4H7-2|HAUS6	MULTI-MSMS	OvCa99_classI_Rep5	1	580.7919921875	2	580.793318	1159.57208	1.6064	0.000933	-4.0533	-0.0023541	-2.4469	-0.0014211	580.790713172428	80.688	0.59447	80.688	80.399	80.993	0					43	13	4	0	0	0	0.39237	1	8278	8278		61.691	1.573	1	3309900	+		23092	20086	18857	18880	25733	25733					-0.0013210480703946814
KGFKQFFD	8	Unmodified	_KGFKQFFD_					0	0	0			REV__nc|ENSG00000112425|O95278-6|EPM2A	REV__nc|ENSG00000112425|O95278-6|EPM2A	MULTI-MSMS	OvCa99_classI_Rep5	1	508.762451171875	2	508.763635	1015.51272	0.10116	5.1469E-05	-4.4701	-0.0022742	-4.369	-0.0022228	508.7612550652384	32.357	0.88467	32.357	32.105	32.989	0					42	17	4	0	0	0	0.66057	1	1424	1424		51.335	3.6781	1	410850	+		23093	18101	18858	18881	25734	25734					0.005580887600899587
KGFLGLNKIK	10	Unmodified	_KGFLGLNKIK_					0	0	0		ENSG00000142178|ENST00000270162|SIK1	ENSG00000142178|ENST00000270162|SIK1	ENSG00000142178|ENST00000270162|SIK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.3594970703125	2	559.358234	1116.70191	0.44355	0.0002481	-0.81676	-0.00045686	-0.37322	-0.00020876	559.3576984469746	99.145	1.8504	96.82	96.484	98.335	-2.3253					92	35	4	0	0	0	0.3976	1	8835	8835		68.787	10.005	1	566800			23094	4958	18859	18882	25735	25735					0.14823161053391232
KGFLLKKRK	9	Unmodified	_KGFLLKKRK_					0	0	0		nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3	nc|ENSG00000070882|Q9H4L5-2|OSBPL3	nc|ENSG00000070882|Q9H4L5-2|OSBPL3	MULTI-SECPEP	OvCa9_classI_Rep3	3	559.33349609375	2	559.382043	1116.74953	0.051045	2.8554E-05	4.4296	0.0024778	4.4806	0.0025064	559.384147478246	105.67	0.3631	104.33	104.2	104.56	-1.3482					9	6	2	0	0	0	0.027462	1	7426	7426		17.365	5.8539	1	11657			23095	1439	18860	18883	25736	25736					0.19582860044260997
KGFQFFLI	8	Unmodified	_KGFQFFLI_					0	0	0		L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|315|3|anti-sense	L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|315|3|anti-sense	L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|315|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.8300476074219	2	500.286746	998.558939	-0.2692	-0.00013468	-3.037	-0.0015193	-3.3062	-0.001654	500.28520745760585	75.509	1.6865	72.57	71.726	73.412	-2.9389					49	34	2	0	0	0	0.028476	1	5924	5924		26.796	6.3143	1	153590			23096	14566	18861	18884	25737	25737					0.059601536621812556
KGFRLYWSVI	10	Unmodified	_KGFRLYWSVI_					0	0	0		tr|A0A7D6ZGX9|A0A7D6ZGX9_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00560PE=3SV=1	tr|A0A7D6ZGX9|A0A7D6ZGX9_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00560PE=3SV=1	tr|A0A7D6ZGX9|A0A7D6ZGX9_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00560PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	634.3248901367188	2	634.861141	1267.70773	-1.9418	-0.0012328	-2.7492	-0.0017454	-4.6911	-0.0029782	634.8593090635901	101.1	0.9407	100.34	99.973	100.91	-0.76401					29	18	2	0	0	0	0.027174	1	9223	9223		14.865	0	1	18717			23097	35555	18862	18885	25738	25738					0.08458259565054504
KGGEKLQIK	9	Unmodified	_KGGEKLQIK_					0	0	0		nc|ENSG00000160710|P55265-5|ADAR;nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR	nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-5|ADAR	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.75994873046875	2	500.811116	999.60768	-1.0528	-0.00052724	0.63723	0.00031913	-0.41555	-0.00020811	500.8113486131485	65.64	0.90295	65.64	65.347	66.25	0					49	22	4	0	0	0	0.027425	1	5994	5994		35.152	0	1	3687100			23098	6084	18863	18886	25739	25739					0.10786022231275183
KGGFKLLL	8	Unmodified	_KGGFKLLL_					0	0	0			REV__ENST00000448864.5_1_3:197677096-197677129:+|nuORF	REV__ENST00000448864.5_1_3:197677096-197677129:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	438.28948974609375	2	438.289288	874.564024	2.5706	0.0011266	-0.065551	-2.8731E-05	2.505	0.0010979	438.2892241028261	133.25	0.63725	133.25	133.04	133.67	0					26	13	3	0	0	0	0.75661	1	15515	15515		19.36	0	1	105420	+		23099	25936	18864	18887	25740	25740					0.12172457524798119
KGGGAQRR	8	Unmodified	_KGGGAQRR_					0	0	0			REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF	REV__ENST00000591247.5_1_17:42113394-42113565:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.5379333496094	2	415.241193	828.467832	0.072605	3.0148E-05	-4.1486	-0.0017227	-4.076	-0.0016925	415.2393330789806	37.781	0.32083	37.781	37.576	37.896	0					15	6	3	0	0	0	0.028476	1	2088	2088		7.1934	0	1	151320	+		23100	27928	18865	18888	25741	25741					0.046737027374206264
KGGIKVRNSY	10	Unmodified	_KGGIKVRNSY_					0	0	0		nc|ENSG00000085831|Q5SRH9-3|TTC39A;ENSG00000085831|ENST00000680483|TTC39A;nc|ENSG00000085831|Q5SRH9-6|TTC39A;nc|ENSG00000085831|Q5SRH9-4|TTC39A;nc|ENSG00000085831|Q5SRH9|TTC39A	nc|ENSG00000085831|Q5SRH9-3|TTC39A	nc|ENSG00000085831|Q5SRH9-3|TTC39A	MULTI-SECPEP	OvCa9_classI_Rep2	2	561.8709106445312	2	561.324922	1120.63529	-0.15584	-8.7477E-05	2.9198	0.001639	2.764	0.0015515	561.326283010941	104.53	1.4871	103.95	103.67	105.16	-0.57639					60	29	4	0	0	0	0.026867	1	9763	9763		42.864	8.9426	1	207020			23101	1740	18866	18889	25742	25742					0.07979925491508766
KGGIWVLCEH	10	Unmodified	_KGGIWVLCEH_					0	0	0		ENSG00000176092|ENST00000308182|CRYBG2	ENSG00000176092|ENST00000308182|CRYBG2	ENSG00000176092|ENST00000308182|CRYBG2	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.8368530273438	2	571.294776	1140.575	-0.51733	-0.00029555	-1.0299	-0.00058838	-1.5472	-0.00088393	571.795118545937	67.798	0.39161	67.798	67.604	67.996	0					19	9	3	0	0	0	0.026891	1	6367	6367		31.53	0	1	132510			23102	7581	18867	18890	25743	25743					0.01033491836756184
KGGIYWIH	8	Unmodified	_KGGIYWIH_					0	0	0			REV__BRSK2|p.G392Afs*39|1|0.75|ENSG00000174672|chr11:1445854-1445854|C/-|frameshift_variant	REV__BRSK2|p.G392Afs*39|1|0.75|ENSG00000174672|chr11:1445854-1445854|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.74517822265625	2	487.266345	972.518136	2.1044	0.0010254	-3.9767	-0.0019377	-1.8723	-0.0009123	487.26413178999866	76.315	0.68385	76.315	76.115	76.799	0					36	16	4	0	0	0	0.028476	1	7682	7682		57.453	0	1	1929200	+		23103	15713	18868	18891	25744	25744					0.03077812342564812
KGGKARIA	8	Unmodified	_KGGKARIA_					0	0	0			REV__tr|A0A553SFP2|A0A553SFP2_NIACIIntracellularproteinaseinhibitorBsuPIdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09235PE=4SV=1	REV__tr|A0A553SFP2|A0A553SFP2_NIACIIntracellularproteinaseinhibitorBsuPIdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09235PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.2143859863281	2	400.758687	799.502821	1.2203	0.00048904	-1.6099	-0.00064517	-0.38957	-0.00015612	400.7580423518447	47.411	0.34329	47.411	47.208	47.551	0					10	7	2	0	0	0	0.028476	1	3421	3421		3.9852	0	1	113460	+		23104	29600	18869	18892	25745	25745					0.09504945545370447
KGGKFKIDTL	10	Unmodified	_KGGKFKIDTL_					0	0	0			REV__tr|A0A553SPT1|A0A553SPT1_NIACIPseudouridinesynthaseOS=NialliacirculansOX=1397GN=CEQ21_08980PE=3SV=1	REV__tr|A0A553SPT1|A0A553SPT1_NIACIPseudouridinesynthaseOS=NialliacirculansOX=1397GN=CEQ21_08980PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8294067382812	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.72319	1	14360	14360		27.882	2.3082	1	245610	+		23105	30566	18870	18893	25746	25746					0.10094577919812764
KGGKFKIDTL	10	Unmodified	_KGGKFKIDTL_					0	0	0			REV__tr|A0A553SPT1|A0A553SPT1_NIACIPseudouridinesynthaseOS=NialliacirculansOX=1397GN=CEQ21_08980PE=3SV=1	REV__tr|A0A553SPT1|A0A553SPT1_NIACIPseudouridinesynthaseOS=NialliacirculansOX=1397GN=CEQ21_08980PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8306884765625	2	553.832049	1105.64954	0.13277	7.3535E-05	-3.4573	-0.0019148	-3.3245	-0.0018412	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.71173	1	14038	14038		29.17	0	1	400120	+		23106	30566	18870	18893	25747	25747					0.10094577919812764
KGGLHFILVP	10	Unmodified	_KGGLHFILVP_					0	0	0			REV__HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|4|1|sense	REV__HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|4|1|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.8312377929688	2	540.831852	1079.64915	-2.0025	-0.001083	1.179	0.00063766	-0.82347	-0.00044536	540.8325567076699	124.8	3.4681	123.41	123.02	126.49	-1.3908					189	68	4	0	0	0	0.58282	2	11820	11820;11953		44.117	5.3107	1	9581200	+		23107	28251	18871	18894	25748;25749	25748					0.11251202990592901
KGGLIFAL	8	Unmodified	_KGGLIFAL_					0	0	0		tr|A0A7D6VPG3|A0A7D6VPG3_9CLOTV-typeATPsynthasesubunitKOS=ClostridiumintestinaleOX=36845GN=HZF06_16695PE=3SV=1	tr|A0A7D6VPG3|A0A7D6VPG3_9CLOTV-typeATPsynthasesubunitKOS=ClostridiumintestinaleOX=36845GN=HZF06_16695PE=3SV=1	tr|A0A7D6VPG3|A0A7D6VPG3_9CLOTV-typeATPsynthasesubunitKOS=ClostridiumintestinaleOX=36845GN=HZF06_16695PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	409.20416259765625	2	409.760364	817.506175	0.19867	8.1408E-05	-0.041273	-1.6912E-05	0.1574	6.4496E-05	409.7602148743577	70.211	0.6029	70.211	69.962	70.565	0					22	14	2	0	0	0	0.028476	1	6763	6763		13.775	0	1	243100			23108	34767	18872	18895	25750	25750					0.09012195599370898
KGGLLKIR	8	Unmodified	_KGGLLKIR_					0	0	0			REV__tr|A0A553SK56|A0A553SK56_NIACIUroporphyrinogen-IIIsynthaseOS=NialliacirculansOX=1397GN=CEQ21_18250PE=3SV=1	REV__tr|A0A553SK56|A0A553SK56_NIACIUroporphyrinogen-IIIsynthaseOS=NialliacirculansOX=1397GN=CEQ21_18250PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	442.267578125	2	442.805637	883.596721	0.30095	0.00013326	-0.42798	-0.00018951	-0.12703	-5.625E-05	442.80534855576474	59.431	0.68283	59.431	59.083	59.766	0					21	17	2	0	0	0	0.028476	1	5129	5129		23.042	4.7181	1	232340	+		23109	30080	18873	18896	25751	25751					0.15026664647643884
KGGLSLKVLLP	11	Unmodified	_KGGLSLKVLLP_					0	0	0		tr|A0A7D7A669|A0A7D7A669_9CLOTMBLfoldmetallo-hydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09185PE=4SV=1	tr|A0A7D7A669|A0A7D7A669_9CLOTMBLfoldmetallo-hydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09185PE=4SV=1	tr|A0A7D7A669|A0A7D7A669_9CLOTMBLfoldmetallo-hydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09185PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	563.7933349609375	2	562.873717	1123.73288	-0.66068	-0.00037188	0.17648	9.9333E-05	-0.48421	-0.00027255	562.8737110739635	88.554	1.0326	86.424	86.061	87.093	-2.1309					42	20	3	0	0	0	0.025701	1	5418	5418		29.17	11.805	1	87128			23110	36188	18874	18897	25752	25752					0.175963143676654
KGGLSVLH	8	Unmodified	_KGGLSVLH_					0	0	0			REV__ENST00000460939.5_1_11:62369949-62370383:-|nuORF	REV__ENST00000460939.5_1_11:62369949-62370383:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.89154052734375	2	405.745245	809.475937	1.3379	0.00054283	-1.3708	-0.00055621	-0.032957	-1.3372E-05	405.7446800117293	46.532	0.39353	46.532	46.369	46.762	0					12	8	2	0	0	0	0.028476	1	3284	3284		7.1934	3.7833	1	140160	+		23111	20166	18875	18898	25753	25753					0.06357836934171246
KGGNHLLL	8	Unmodified	_KGGNHLLL_					0	0	0			REV__ENST00000530595.1_1_11:57418072-57418390:+|nuORF	REV__ENST00000530595.1_1_11:57418072-57418390:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	426.9429626464844	2	426.25852	850.502486	0.62518	0.00026649	-1.6855	-0.00071848	-1.0604	-0.00045199	426.25778358761073	79.271	0.48775	76.931	76.514	77.002	-2.3399					11	9	2	0	0	0	0.028476	1	4275	4275		12.959	0.75233	1	19873	+		23112	27207	18876	18899	25754	25754					0.07125525825529166
KGGNHLLL	8	Unmodified	_KGGNHLLL_					0	0	0			REV__ENST00000530595.1_1_11:57418072-57418390:+|nuORF	REV__ENST00000530595.1_1_11:57418072-57418390:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	426.25852	850.502486	-0.33213	-0.00014157	0.34349	0.00014642	0.011358	4.8416E-06	426.2585472076118	80.049	0.58886	77.298	76.986	77.575	-2.7514	0.18349	0.0007817	NaN	19.36	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19822	+		23113	27207	18876	18899							0.07125525825529166
KGGPMFYAST	10	Unmodified	_KGGPMFYAST_					0	0	0		nc|ENSG00000113790|Q08426-2|EHHADH;ENSG00000113790|ENST00000231887|EHHADH	nc|ENSG00000113790|Q08426-2|EHHADH	nc|ENSG00000113790|Q08426-2|EHHADH	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.809814453125	2	529.75241	1057.49027	-1.6279	-0.00086239	-1.5518	-0.00082206	-3.1797	-0.0016845	530.2550785350048	81.444	0.24579	78.733	78.592	78.838	-2.7106					5	4	2	0	0	0	0.02661	1	6680	6680		40.778	0	1	10276			23114	2995	18877	18900	25755	25755					-0.036178786998334544
KGGPVLKQF	9	Unmodified	_KGGPVLKQF_					0	0	0			REV__ENSG00000108055|ENST00000361804|SMC3	REV__ENSG00000108055|ENST00000361804|SMC3	MULTI-SECPEP	OvCa9_classI_Rep3	3	488.2793884277344	2	487.295102	972.575651	-0.36921	-0.00017991	0.16082	7.8368E-05	-0.20838	-0.00010154	487.29510692562263	103.49	1.2583	102.05	101.76	103.02	-1.4347					47	23	3	0	0	0	0.027462	1	7248	7248		42.396	19.354	1	158550	+		23115	17871	18878	18901	25756	25756					0.08826654548136048
KGGPWKND	8	Unmodified	_KGGPWKND_					0	0	0		ENST00000541477.5_1_12:7032227-7032275:+|nuORF	ENST00000541477.5_1_12:7032227-7032275:+|nuORF	ENST00000541477.5_1_12:7032227-7032275:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.7626037597656	2	451.229959	900.445365	-0.041534	-1.8741E-05	1.5817	0.00071373	1.5402	0.00069499	451.23094710462277	58.873	0.71816	58.873	58.696	59.414	0					40	18	3	0	0	0	0.028476	1	5023	5023		18.324	0	1	3221500			23116	13467	18879	18902	25757	25757					-0.008839414508656773
KGGQRIKQ	8	Unmodified	_KGGQRIKQ_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.7460021972656	2	457.780151	913.545748	-0.9981	-0.00045691	-3.0536	-0.0013979	-4.0517	-0.0018548	457.77800649981646	42.468	1.6534	39.487	39.167	40.82	-2.9804					48	31	3	0	0	0	0.028476	1	2038	2038		7.6903	0	1	141640			23117	6523	18880	18903	25758	25758					0.08551715602811782
KGGQVLWSM	9	Unmodified	_KGGQVLWSM_					0	0	0			REV__nc|ENSG00000104055|O43548-2|TGM5	REV__nc|ENSG00000104055|O43548-2|TGM5	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.2607421875	2	503.262945	1004.51134	1.382	0.00069549	-1.8374	-0.00092469	-0.45541	-0.00022919	503.2617562043738	78.99	0.24567	78.99	78.791	79.037	0					6	5	2	0	0	0	0.027462	1	8011	8011		29.15	0	1	113210	+		23118	17641	18881	18904	25759	25759					0.00926131399694441
KGGRKRKRP	9	Unmodified	_KGGRKRKRP_					0	0	0			REV__ENST00000281708.8_1_4:153456099-153456309:-|nuORF	REV__ENST00000281708.8_1_4:153456099-153456309:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.784423828125	2	541.854516	1081.69448	-1.0783	-0.00058426	3.027	0.0016402	1.9487	0.0010559	541.8561411062981	52.43	1.1017	49.222	48.893	49.995	-3.208					54	21	3	0	0	0	0.027462	1	3208	3208		21.96	11.094	1	378420	+		23119	24115	18882	18905	25760	25760					0.15689866296361288
KGGRLVEKLWP	11	Unmodified	_KGGRLVEKLWP_					0	0	0		nc|ENSG00000089820|P98171-2|ARHGAP4	nc|ENSG00000089820|P98171-2|ARHGAP4	nc|ENSG00000089820|P98171-2|ARHGAP4	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8823852539062	2	641.885147	1281.75574	-2.5182	-0.0016164	-1.9587	-0.0012572	-4.4768	-0.0028736	641.8839546837315	150.47	2.9704	149.03	147.78	150.75	-1.4344					235	64	4	0	0	0	0.70761	1	14791	14791		27.047	0	1	344900			23120	14914	18883	18906	25761	25761					0.12613333485114708
KGGRMLFPYIL	11	Unmodified	_KGGRMLFPYIL_					0	0	0			REV__ENSG00000145545|ENST00000274192|SRD5A1	REV__ENSG00000145545|ENST00000274192|SRD5A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	432.2234802246094	3	432.249526	1293.72675	-0.33448	-0.00014458	-0.29647	-0.00012815	-0.63095	-0.00027273	432.24994911583656	59.68	0.193	59.68	59.533	59.726	0					5	4	2	0	0	0	0.025248	1	5153	5153		42.338	2.4649	1	95589	+		23121	19967	18884	18907	25762	25762					0.09163472864497635
KGGRQYPAI	9	Unmodified	_KGGRQYPAI_					0	0	0			REV__tr|A0A7D6VQ63|A0A7D6VQ63_9CLOTATPsynthasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=atpDPE=3SV=1	REV__tr|A0A7D6VQ63|A0A7D6VQ63_9CLOTATPsynthasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=atpDPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.25592041015625	2	495.279983	988.545414	-0.99918	-0.00049487	0.66062	0.00032719	-0.33856	-0.00016768	495.28030349213475	49.712	0.56833	49.712	49.462	50.031	0					24	12	3	0	0	0	0.027456	1	3726	3726		57.811	11.859	1	431120	+		23122	31300	18885	18908	25763	25763					0.050682958829384006
KGGRRGAEEP	10	Unmodified	_KGGRRGAEEP_					0	0	0			REV__ENSG00000114853|ENST00000232974|ZBTB47	REV__ENSG00000114853|ENST00000232974|ZBTB47	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.7865600585938	2	528.780879	1055.5472	0.45652	0.0002414	-0.86514	-0.00045747	-0.40861	-0.00021607	528.7802867904029	45.601	0.12683	45.601	45.54	45.667	0					4	2	2	0	0	0	0.026994	1	3170	3170		32.812	8.2932	1	32056	+		23123	18205	18886	18909	25764	25764					0.0216530490090463
KGGRRTPP	8	Unmodified	_KGGRRTPP_					0	0	0			REV__nc|ENSG00000115266|O95996-2|APC2	REV__nc|ENSG00000115266|O95996-2|APC2	MULTI-MSMS	OvCa9_classI_Rep3	3	434.7591247558594	2	434.759218	867.503883	-1.3377	-0.00058158	1.4594	0.00063449	0.12169	5.2907E-05	434.7597358333452	139.11	1.8707	138.05	137.63	139.51	-1.0595					91	37	4	0	0	0	0.75991	1	11461	11461		21.702	1.2205	1	610970	+		23124	18228	18887	18910	25765	25765					0.06483159914284897
KGGRVIAPK	9	Unmodified	_KGGRVIAPK_					0	0	0		ENSG00000104979|ENST00000588234|C19orf53	ENSG00000104979|ENST00000588234|C19orf53	ENSG00000104979|ENST00000588234|C19orf53	MULTI-MSMS	OvCa9_classI_Rep2	2	463.3001708984375	2	463.300719	924.586885	0.3212	0.00014881	-0.65578	-0.00030382	-0.33458	-0.00015501	463.3002881383064	30.933	0.49146	28.224	28.1	28.592	-2.7097					16	9	2	0	0	0	0.46377	1	891	891		45.952	10.751	1	57602			23125	2415	18888	18911	25766	25766					0.12157476642266829
KGGSLIEAF	9	Unmodified	_KGGSLIEAF_					0	0	0		ENSG00000147647|ENST00000351513|DPYS	ENSG00000147647|ENST00000351513|DPYS	ENSG00000147647|ENST00000351513|DPYS	MULTI-SECPEP	OvCa99_classI_Rep5	1	461.73675537109375	2	461.255643	920.496732	0.78879	0.00036383	-0.79541	-0.00036689	-0.0066163	-3.0518E-06	461.25516993762074	66.982	0.70851	66.982	66.739	67.448	0					32	17	2	0	0	0	0.027441	1	6247	6247		29.15	0	1	1002300			23126	5368	18889	18912	25767	25767					0.03330382523188291
KGGTALYGGI	10	Unmodified	_KGGTALYGGI_					0	0	0			REV__tr|A0A553SID5|A0A553SID5_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=celBPE=4SV=1	REV__tr|A0A553SID5|A0A553SID5_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=celBPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	468.76123046875	2	468.761092	935.507631	-0.81986	-0.00038432	0.84758	0.00039731	0.02772	1.2994E-05	468.7613295346182	56.798	1.338	53.994	53.523	54.861	-2.804					60	26	4	0	0	0	0.66721	1	4026	4026		34.173	0.65696	1	195110	+		23127	29884	18890	18913	25768	25768					0.03729784897461741
KGGVEDRVVT	10	Unmodified	_KGGVEDRVVT_					0	0	0			REV__nc|ENSG00000171121|Q9NPA1-4|KCNMB3	REV__nc|ENSG00000171121|Q9NPA1-4|KCNMB3	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.306640625	2	530.293288	1058.57202	0.36783	0.00019506	2.6202	0.0013895	2.988	0.0015845	530.2949413592976	104.48	1.0388	103.05	102.55	103.59	-1.4347					44	19	3	0	0	0	0.026681	1	7328	7328		29.17	9.1733	1	126650	+		23128	21594	18891	18914	25769	25769					0.04507939983614051
KGGVIRGQPK	10	Unmodified	_KGGVIRGQPK_					0	0	0			REV__ENSG00000057593|ENST00000346342|F7	REV__ENSG00000057593|ENST00000346342|F7	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3222045898438	2	520.322183	1038.62981	-0.056752	-2.9529E-05	-0.23196	-0.00012069	-0.28871	-0.00015022	520.321910932652	59.379	1.3543	56.599	56.137	57.491	-2.7801					59	25	4	0	0	0	0.6104	1	4338	4338		40.778	3.6191	1	379380	+		23129	16721	18892	18915	25770	25770					0.11204246699708165
KGGVIRPK	8	Unmodified	_KGGVIRPK_					0	0	0			REV__IGSF10|p.V2314Efs*19|1|0.09|ENSG00000152580|chr3:151437598-151437620|CTCTCCACCTTCATTTCGGGCCA/-|frameshift_variant	REV__IGSF10|p.V2314Efs*19|1|0.09|ENSG00000152580|chr3:151437598-151437620|CTCTCCACCTTCATTTCGGGCCA/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	428.2197265625	2	427.782162	853.549771	-0.21809	-9.3294E-05	0.32394	0.00013858	0.10585	4.5281E-05	427.78236435170794	38.904	0.26765	38.904	38.75	39.017	0					9	5	2	0	0	0	0.028476	1	2248	2248		3.41	2.4131	1	68782	+		23130	20294	18893	18916	25771	25771					0.11713805096508167
KGGVLLKS	8	Unmodified	_KGGVLLKS_					0	0	0			REV__nc|ENSG00000101350|O15066-2|KIF3B	REV__nc|ENSG00000101350|O15066-2|KIF3B	MULTI-MSMS	OvCa9_classI_Rep3	3	401.2621154785156	2	401.263271	800.511988	-0.21441	-8.6037E-05	-2.9352	-0.0011778	-3.1496	-0.0012638	401.26203375308216	137.05	1.2653	135.96	135.51	136.78	-1.0858					61	25	3	0	0	0	0.74038	1	11163	11163		12.207	2.7363	1	224680	+		23131	17493	18894	18917	25772	25772					0.10375294111042876
KGIAISPTV	9	Unmodified	_KGIAISPTV_					0	0	0		tr|A0A553ST62|A0A553ST62_NIACIDUF1177domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04355PE=4SV=1	tr|A0A553ST62|A0A553ST62_NIACIDUF1177domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04355PE=4SV=1	tr|A0A553ST62|A0A553ST62_NIACIDUF1177domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04355PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	443.2725830078125	2	443.273835	884.533118	0.83529	0.00037026	-3.8589	-0.0017105	-3.0236	-0.0013403	443.27205335230417	138.39	1.523	138.16	137.68	139.21	-0.22696					79	30	3	0	0	0	0.63422	1	13793	13793		27.882	4.8398	1	138730			23132	34460	18895	18918	25773	25773					0.08623259419880469
KGIDHLLGAI	10	Unmodified	_KGIDHLLGAI_					0	0	0			REV__tr|A0A7D7A027|A0A7D7A027_9CLOTHDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22400PE=4SV=1	REV__tr|A0A7D7A027|A0A7D7A027_9CLOTHDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22400PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	518.8079223632812	2	518.811116	1035.60768	-0.049483	-2.5672E-05	-1.1441	-0.00059357	-1.1936	-0.00061924	518.8105741700431	88.52	3.827	86.389	85.803	89.63	-2.1309					168	75	5	0	0	0	0.62299	1	5468	5468		39.253	5.0803	1	8533700	+		23133	32433	18896	18919	25774	25774					0.09130022231283874
KGIEHVTK	8	Unmodified	_KGIEHVTK_					0	0	0			REV__tr|A0A7D6VNA1|A0A7D6VNA1_9CLOTAmidohydrolasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18100PE=4SV=1	REV__tr|A0A7D6VNA1|A0A7D6VNA1_9CLOTAmidohydrolasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18100PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	456.7805480957031	2	456.269084	910.523616	0.17487	7.9789E-05	-0.26967	-0.00012304	-0.094796	-4.3253E-05	456.26876724342145	79.334	1.1967	76.994	76.367	77.563	-2.3399					29	23	2	0	0	0	0.028476	1	4341	4341		10.866	4.9445	1	22235	+		23134	31164	18897	18920	25775	25775					0.06477491134364755
KGIESNASSSL	11	Unmodified	_KGIESNASSSL_					0	0	0			REV__nc|ENSG00000173821|Q63HN8-5|RNF213	REV__nc|ENSG00000173821|Q63HN8-5|RNF213	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.7813110351562	2	546.78021	1091.54587	3.705	0.0020258	-0.097664	-5.3401E-05	3.6074	0.0019724	546.7800033528225	131.81	1.3099	130.31	129.98	131.29	-1.5015					60	25	3	0	0	0	0.67529	1	12760	12760		37.812	3.639	1	73348	+		23135	29010	18898	18921	25776	25776					0.0037562602146863355
KGIITLAPQLN	11	Unmodified	_KGIITLAPQLN_					0	0	0			REV__ENST00000549928.5_1_12:60154925-60173457:+|nuORF	REV__ENST00000549928.5_1_12:60154925-60173457:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	584.35595703125	2	584.358431	1166.70231	-4.6254	-0.0027029	1.1397	0.00066599	-3.4857	-0.0020369	584.3589865391973	145.25	4.5766	144.28	142.9	147.48	-0.97299					233	91	4	0	0	0	0.70761	1	12230	12230		27.047	3.5246	1	156220	+		23136	18407	18899	18922	25777	25777					0.1256253598260173
KGIPLEHTTI	10	Unmodified	_KGIPLEHTTI_					0	0	0		tr|A0A553STR4|A0A553STR4_NIACIDUF111familyproteinOS=NialliacirculansOX=1397GN=CEQ21_05525PE=4SV=1	tr|A0A553STR4|A0A553STR4_NIACIDUF111familyproteinOS=NialliacirculansOX=1397GN=CEQ21_05525PE=4SV=1	tr|A0A553STR4|A0A553STR4_NIACIDUF111familyproteinOS=NialliacirculansOX=1397GN=CEQ21_05525PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	554.825439453125	2	554.821681	1107.62881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.096	1	94.096	93.596	94.596	0								0	0	0	0.082999	1	10230	10230		77.318	0.54344	1				23137	34521	18900	18923	25778	25778					0.07929987540137517
KGIRKDPFLY	10	Unmodified	_KGIRKDPFLY_					0	0	0		ENSG00000174442|ENST00000307897|ZWILCH;ENST00000565960.1_1_15:66801167-66811221:+|nuORF	ENSG00000174442|ENST00000307897|ZWILCH	ENSG00000174442|ENST00000307897|ZWILCH	MULTI-SECPEP	OvCa9_classI_Rep4_	4	618.3156127929688	2	618.858598	1235.70264	0.017756	1.0988E-05	-3.5939	-0.0022241	-3.5761	-0.0022131	618.8562616421615	64.923	1.3579	61.438	61.114	62.472	-3.4854					67	27	3	0	0	0	0.027088	1	4613	4613		26.693	0	1	270380			23138	7464	18901	18924	25779	25779					0.09421955702464402
KGIVEFFL	8	Unmodified	_KGIVEFFL_					0	0	0		tr|A0A553SSG2|A0A553SSG2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03090PE=4SV=1	tr|A0A553SSG2|A0A553SSG2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03090PE=4SV=1	tr|A0A553SSG2|A0A553SSG2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03090PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	477.7843322753906	2	476.778754	951.542954	0.48207	0.00022984	-1.4694	-0.00070058	-0.98733	-0.00047074	476.776256085318	113.03	1.6288	112.91	112.52	114.15	-0.12174					105	32	5	0	0	0	0.67745	1	10705	10705		47.916	0	1	498690			23139	34373	18902	18925	25780	25780					0.06524447425283597
KGIVLEKV	8	Unmodified	_KGIVLEKV_					0	0	0		ENSG00000186468|ENST00000296674|RPS23	ENSG00000186468|ENST00000296674|RPS23	ENSG00000186468|ENST00000296674|RPS23	MULTI-MSMS	OvCa99_classI_Rep5	1	443.2927551269531	2	443.292028	884.569503	0.82832	0.00036719	-1.1549	-0.00051195	-0.32656	-0.00014476	443.29148912060225	56.403	2.6018	56.403	56.094	58.696	0					125	61	3	0	0	0	0.022219	4	4684	4656;4684;4715;4751		190.52	46.631	1	44959000			23140	8336	18903	18926	25781;25782;25783;25784	25782					0.12260136316604076
KGKGAAGG	8	Unmodified	_KGKGAAGG_					0	0	0		ENSG00000182223|ENST00000327939|ZAR1	ENSG00000182223|ENST00000327939|ZAR1	ENSG00000182223|ENST00000327939|ZAR1	MULTI-MSMS	OvCa99_classI_Rep5	1	645.3710327148438	1	645.36785	644.360573	2.014	0.0012998	4.4161	0.00285	6.4301	0.0041498	645.3704574469551	134.76	0.47189	134.76	134.47	134.95	0					16	10	2	0	0	0	0.75426	1	15688	15688		18.324	9.5021	1	122730			23141	7983	18904	18927	25785	25785					0.024167328031921897
KGKILKCSA	9	Unmodified	_KGKILKCSA_					0	0	0			REV__ENST00000601004.1_1_19:23567552-23568092:+|nuORF	REV__ENST00000601004.1_1_19:23567552-23568092:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	474.2901611328125	2	474.288963	946.563372	0.66896	0.00031728	3.2438	0.0015385	3.9127	0.0018558	474.2903983713437	130.57	1.7358	130.34	129.71	131.45	-0.22697					61	34	2	0	0	0	0.69895	1	12853	12853		18.324	0.95945	1	39802	+		23142	28033	18905	18928	25786	25786					0.08795294813432974
KGKILKCSA	9	Unmodified	_KGKILKCSA_					0	0	0			REV__ENST00000601004.1_1_19:23567552-23568092:+|nuORF	REV__ENST00000601004.1_1_19:23567552-23568092:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	474.288963	946.563372	0.98101	0.00046528	2.5866	0.0012268	3.5676	0.0016921	474.2901851002003	131.08	0.33679	129.96	129.81	130.15	-1.1249	-0.19209	-0.00055955	NaN	18.324	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12544	+		23143	28033	18905	18928							0.08795294813432974
KGKISVKVGH	10	Unmodified	_KGKISVKVGH_					0	0	0			REV__tr|A0A7D6ZSI3|A0A7D6ZSI3_9CLOTCd(2+)-exportingATPaseOS=ClostridiumintestinaleOX=36845GN=cadAPE=3SV=1	REV__tr|A0A7D6ZSI3|A0A7D6ZSI3_9CLOTCd(2+)-exportingATPaseOS=ClostridiumintestinaleOX=36845GN=cadAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	526.8330688476562	2	526.832383	1051.65021	-0.02688	-1.4162E-05	2.9838	0.001572	2.9569	0.0015578	526.8321214850487	69.898	2.0087	67.178	66.856	68.864	-2.7196					118	39	6	0	0	0	0.55359	1	3176	3176		47.657	6.8792	1	1842000	+		23144	32189	18906	18929	25787	25787					0.12645417359499334
KGKIVQTIV	9	Unmodified	_KGKIVQTIV_					0	0	0		tr|A0A553SS31|A0A553SS31_NIACIAmidohydrolase-relateddomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02240PE=4SV=1	tr|A0A553SS31|A0A553SS31_NIACIAmidohydrolase-relateddomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02240PE=4SV=1	tr|A0A553SS31|A0A553SS31_NIACIAmidohydrolase-relateddomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02240PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	493.3245544433594	2	493.32386	984.633166	0.32462	0.00016014	-0.47453	-0.0002341	-0.14991	-7.3954E-05	493.3234613432452	114.6	1.4806	114.48	114.16	115.64	-0.11777					70	29	3	0	0	0	0.37135	1	10920	10920		54.776	7.119	1	205500			23145	34326	18907	18930	25788	25788					0.14023496753702602
KGKKGAEVVM	10	Unmodified	_KGKKGAEVVM_					0	0	0		ENST00000490638.5_1_9:35660467-35660770:-|nuORF	ENST00000490638.5_1_9:35660467-35660770:-|nuORF	ENST00000490638.5_1_9:35660467-35660770:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7688598632812	2	523.804977	1045.5954	1.0159	0.00053212	0.56207	0.00029442	1.5779	0.00082653	523.8048062243498	119.17	0.61239	119.17	118.77	119.38	0					20	12	2	0	0	0	0.02706	1	13677	13677		30.318	0	1	80426			23146	12698	18908	18931	25789	25789					0.07442662496578123
KGKKGEVKN	9	Unmodified	_KGKKGEVKN_					0	0	0		tr|A0A553SHN9|A0A553SHN9_NIACILargeribosomalsubunitproteinbL9OS=NialliacirculansOX=1397GN=rplIPE=3SV=1	tr|A0A553SHN9|A0A553SHN9_NIACILargeribosomalsubunitproteinbL9OS=NialliacirculansOX=1397GN=rplIPE=3SV=1	tr|A0A553SHN9|A0A553SHN9_NIACILargeribosomalsubunitproteinbL9OS=NialliacirculansOX=1397GN=rplIPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.301513671875	2	494.300916	986.587279	2.3484	0.0011608	3.5091	0.0017345	5.8574	0.0028953	494.3025267410654	97.985	0.29859	97.985	97.78	98.079	0					15	6	3	0	0	0	0.027217	1	10790	10790		82.241	0	1	471020			23147	33291	18909	18932	25790	25790					0.09344851571472645
KGKKGTTTKN	10	Unmodified	_KGKKGTTTKN_					0	0	0			REV__ENST00000243298.2_1_X:103080673-103087036:-|nuORF	REV__ENST00000243298.2_1_X:103080673-103087036:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8167724609375	2	531.81693	1061.61931	-1.8698	-0.0009944	1.8263	0.00097126	-0.043512	-2.3141E-05	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.762	1	13780	13780		23.523	1.5628	1	166960	+		23148	23826	18910	18933	25791	25791					0.0909621925461579
KGKKSRTQK	9	Unmodified	_KGKKSRTQK_					0	0	0		ENST00000488381.5_1_12:6760363-6764813:-|nuORF;ENSG00000111653|ENST00000341550|ING4	ENST00000488381.5_1_12:6760363-6764813:-|nuORF	ENST00000488381.5_1_12:6760363-6764813:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	531.8062744140625	2	530.832914	1059.65128	-0.74878	-0.00039748	3.8889	0.0020643	3.1401	0.0016669	530.8351193340357	78.69	0.58495	76.95	76.512	77.097	-1.7398					20	11	3	0	0	0	0.027462	1	6550	6550		27.882	3.6795	1	36542			23149	2838	18911	18934	25792	25792					0.12383631728403088
KGKLANNVGV	10	Unmodified	_KGKLANNVGV_					0	0	0		tr|A0A553SK46|A0A553SK46_NIACIDUF4879domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18110PE=4SV=1	tr|A0A553SK46|A0A553SK46_NIACIDUF4879domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18110PE=4SV=1	tr|A0A553SK46|A0A553SK46_NIACIDUF4879domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18110PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	500.8053894042969	2	500.300916	998.587279	-0.83481	-0.00041766	2.8351	0.0014184	2.0003	0.0010008	500.3010897037563	50.394	1.1799	50.394	49.813	50.993	0					56	26	5	0	0	0	0.64063	1	3834	3834		37.159	0	1	1407600			23150	33576	18912	18935	25793	25793					0.08792851571467963
KGKLQPVSTIL	11	Unmodified	_KGKLQPVSTIL_					0	0	0		ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ;ENST00000580662.5_1_17:65186450-65214920:-|nuORF;ENST00000584641.5_1_17:65197178-65214920:-|nuORF;HELZ-SRSF4|1|fusion	ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	MULTI-SECPEP	OvCa99_classI_Rep5	1	591.8305053710938	2	592.374081	1182.73361	1.529	0.00090576	-3.3798	-0.0020021	-1.8508	-0.0010964	592.8737742484046	103.15	0.20687	103.15	103.01	103.22	0					6	4	2	0	0	0	0.025806	1	11530	11530		31.53	10.583	1	134320			23151	8802	18913	18936	25794	25794					0.14955109016705137
KGKNRLHLRCK	11	Unmodified	_KGKNRLHLRCK_					0	0	0			REV__ENSG00000146197|ENST00000274938|SCUBE3	REV__ENSG00000146197|ENST00000274938|SCUBE3	MULTI-SECPEP	OvCa9_classI_Rep2	2	450.7613830566406	3	451.606707	1351.79829	0.42428	0.00019161	-3.3892	-0.0015306	-2.9649	-0.001339	451.6052722449824	62.596	0.76462	59.851	59.449	60.213	-2.7444					19	14	2	0	0	0	0.026101	1	4690	4690		21.032	7.5243	1	18704	+		23152	19998	18914	18937	25795	25795					0.1364640534168302
KGKNTPVPE	9	Unmodified	_KGKNTPVPE_					0	0	0		nc|ENSG00000168631|Q3MIW9-2|MUCL3;nc|ENSG00000168631|Q3MIW9|MUCL3;ENSG00000168631|ENST00000462446|MUCL3	nc|ENSG00000168631|Q3MIW9-2|MUCL3	nc|ENSG00000168631|Q3MIW9-2|MUCL3	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.3100280761719	2	485.271824	968.529095	3.831	0.0018591	-3.3897	-0.0016449	0.44122	0.00021411	485.2711562534316	88.364	0.21451	88.364	88.212	88.426	0					6	4	2	0	0	0	0.027462	1	9397	9397		14.137	1.1779	1	108230			23153	6928	18915	18938	25796	25796					0.0435716992617472
KGKPVDSQTS	10	Unmodified	_KGKPVDSQTS_					0	0	0		nc|ENSG00000112339|Q9Y450-4|HBS1L;ENSG00000112339|ENST00000367837|HBS1L;HBS1L|p.T291Kfs*15|1|0.36|ENSG00000112339|chr6:134996842-134996870|TTTAGACTCCTGTTCATACTTATGCATAG/-|frameshift_variant;HBS1L|p.N217Kfs*64|1|0.04|ENSG00000112339|chr6:134997545-134997546|-/AATCAGCTTATGATTTTTACTGTTTTTTTTC|frameshift_variant	nc|ENSG00000112339|Q9Y450-4|HBS1L;HBS1L|p.N217Kfs*64|1|0.04|ENSG00000112339|chr6:134997545-134997546|-/AATCAGCTTATGATTTTTACTGTTTTTTTTC|frameshift_variant	nc|ENSG00000112339|Q9Y450-4|HBS1L	MULTI-MSMS	OvCa99_classI_Rep5	1	523.77978515625	2	523.77747	1045.54039	-1.2629	-0.0006615	2.317	0.0012136	1.0541	0.00055211	523.7785747026708	28.082	0.49829	28.082	27.941	28.439	0					16	9	2	0	0	0	0.59751	1	889	889		42.338	3.0852	1	130270			23154	2900;14390	18916	18939	25797	25797					0.019439472296653548
KGKQRIPPS	9	Unmodified	_KGKQRIPPS_					0	0	0			REV__nc|ENSG00000164877|Q8IY33-3|MICALL2	REV__nc|ENSG00000164877|Q8IY33-3|MICALL2	MULTI-MSMS	OvCa9_classI_Rep3	3	505.80865478515625	2	505.808908	1009.60326	-0.53174	-0.00026896	-0.036462	-1.8443E-05	-0.5682	-0.0002874	505.8088540702735	73.091	1.7346	70.604	70.183	71.917	-2.4873					60	34	2	0	0	0	0.56189	1	3535	3535		36.447	2.2742	1	714830	+		23155	26205	18917	18940	25798	25798					0.098845578083683
KGKRGAAH	8	Unmodified	_KGKRGAAH_					0	0	0			REV__ENST00000463065.5_1_1:85462613-85462766:-|nuORF	REV__ENST00000463065.5_1_1:85462613-85462766:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	412.74603271484375	2	412.746111	823.477669	3.1505	0.0013004	-2.8121	-0.0011607	0.33847	0.0001397	412.74482870844463	135.72	2.2055	134.18	133.51	135.72	-1.5437					107	44	4	0	0	0	0.74595	2	13206	13206;13237		15.636	6.8139	1	1010100	+		23156	26123	18918	18941	25799;25800	25799					0.058868907427950035
KGKVVFFA	8	Unmodified	_KGKVVFFA_					0	0	0		nc|ENSG00000107201|O95786-2|RIGI;ENSG00000107201|ENST00000379883|RIGI	nc|ENSG00000107201|O95786-2|RIGI	nc|ENSG00000107201|O95786-2|RIGI	MULTI-MSMS	OvCa9_classI_Rep2	2	448.27740478515625	2	448.273638	894.532724	5.9919	0.002686	2.0705	0.00092813	8.0623	0.0036141	448.2744393122276	25.364	1.3734	22.654	22.379	23.752	-2.7097					68	30	4	0	0	0	0.74361	1	243	243		29.842	1.5873	1	341610			23157	2596	18919	18942	25801	25801					0.08123884490703404
KGKWVYKGE	9	Unmodified	_KGKWVYKGE_					0	0	0		nc|ENSG00000154118|Q8WXH2-2|JPH3;JPH3|p.I414Mfs*29|1|0.31|ENSG00000154118|chr16:87684222-87684223|-/G|frameshift_variant;ENSG00000154118|ENST00000284262|JPH3	nc|ENSG00000154118|Q8WXH2-2|JPH3	nc|ENSG00000154118|Q8WXH2-2|JPH3	MULTI-MSMS	OvCa99_classI_Rep5	1	547.8060913085938	2	547.803291	1093.59203	1.1642	0.00063776	0.62666	0.00034329	1.7909	0.00098104	547.8034385216218	111.54	0.95863	111.54	111.2	112.16	0					48	20	4	0	0	0	0.37135	1	12673	12673		54.776	3.2486	1	717100			23158	5711	18920	18943	25802	25802					0.04897735714234841
KGLAAALLV	9	Unmodified	_KGLAAALLV_					0	0	0		CCL18|p.C54Pfs*18|1|0.16|ENSG00000275385|chr17:36070538-36070539|GT/-|frameshift_variant;ENSG00000275385|ENST00000616054|CCL18	CCL18|p.C54Pfs*18|1|0.16|ENSG00000275385|chr17:36070538-36070539|GT/-|frameshift_variant	CCL18|p.C54Pfs*18|1|0.16|ENSG00000275385|chr17:36070538-36070539|GT/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	428.2862548828125	2	428.286746	854.558939	0.99158	0.00042468	-0.9535	-0.00040837	0.038079	1.6309E-05	428.28619958305893	106.07	1.3284	104.72	104.35	105.68	-1.3482					67	25	4	0	0	0	0.55588	1	7458	7458		37.159	0.13063	1	507380			23159	199	18921	18944	25803	25803					0.12584153662169228
KGLARRASA	9	Unmodified	_KGLARRASA_					0	0	0		ENSG00000013288|ENST00000285599|MAN2B2;nc|ENSG00000013288|Q9Y2E5-2|MAN2B2	ENSG00000013288|ENST00000285599|MAN2B2	ENSG00000013288|ENST00000285599|MAN2B2	MULTI-MSMS	OvCa9_classI_Rep2	2	465.28533935546875	2	465.2856	928.556647	-1.6358	-0.00076114	1.3561	0.00063096	-0.27978	-0.00013018	465.28614320640764	142.28	1.4816	142.05	141.52	143	-0.22697					68	29	3	0	0	0	0.65371	1	14279	14279		25.574	3.6142	1	102120			23160	981	18922	18945	25804	25804					0.08951117977073864
KGLDRSGLP	9	Unmodified	_KGLDRSGLP_					0	0	0			REV__ENST00000599644.1_1_19:38397918-38398343:+|nuORF	REV__ENST00000599644.1_1_19:38397918-38398343:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	472.75146484375	2	471.771991	941.529429	-0.3694	-0.00017427	0.43984	0.00020751	0.070441	3.3232E-05	471.772087375345	64.335	1.9301	61.61	60.862	62.792	-2.7246					82	36	3	0	0	0	0.027411	1	4853	4853		45.972	13.16	1	448050	+		23161	28024	18923	18946	25805	25805					0.05632589646052111
KGLEKLPLE	9	Unmodified	_KGLEKLPLE_					0	0	0			REV__nc|ENSG00000168916|Q9ULD9-2|ZNF608	REV__nc|ENSG00000168916|Q9ULD9-2|ZNF608	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.8162231445312	2	513.813325	1025.6121	-0.22749	-0.00011689	3.8065	0.0019558	3.579	0.0018389	513.8151298922651	75.964	2.6418	73.025	72.401	75.043	-2.9389					148	54	4	0	0	0	0.51865	1	6008	6008		40.778	1.5253	1	2672000	+		23162	21416	18924	18947	25806	25806					0.10031486654202126
KGLEWIGYI	9	Unmodified	_KGLEWIGYI_					0	0	0		nc|ENSG00000224373|P01825|IGHV4-59;nc|ENSG00000211952|A0A0C4DH34|IGHV4-28;nc|ENSG00000231475|P0DP07|IGHV4-31;nc|ENSG00000231475|A0A087WSY4|IGHV4-30-2;nc|ENSG00000211970|A0A0C4DH41|IGHV4-61	nc|ENSG00000224373|P01825|IGHV4-59	nc|ENSG00000224373|P01825|IGHV4-59	MULTI-MSMS	OvCa99_classI_Rep5	1	539.8013305664062	2	539.800217	1077.58588	-0.030054	-1.6223E-05	0.56855	0.0003069	0.53849	0.00029068	539.8006152612561	68.821	0.25102	68.821	68.649	68.9	0					10	5	2	0	0	0	0.27546	1	6515	6515		65.803	9.0821	1	1873200			23163	15302	18925	18948	25807	25807					0.05019217482708882
KGLFFSLLFK	10	Unmodified	_KGLFFSLLFK_					0	0	0			REV__ENST00000463315.1_1_7:84671439-84671577:-|nuORF	REV__ENST00000463315.1_1_7:84671439-84671577:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.5679016113281	3	400.577749	1198.71142	1.7261	0.00069142	2.0546	0.00082302	3.7806	0.0015144	400.91277287745686	67.335	0.15311	67.335	67.255	67.408	0					6	3	2	0	0	0	0.026646	1	6300	6300		45.022	16.445	1	68311	+		23164	26127	18926	18949	25808	25808					0.1200092933893302
KGLGFILVL	9	Unmodified	_KGLGFILVL_					0	0	0		ENST00000334512.9_1_10:81074688-81075099:+|nuORF	ENST00000334512.9_1_10:81074688-81075099:+|nuORF	ENST00000334512.9_1_10:81074688-81075099:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	480.3174133300781	2	480.318046	958.621539	0.60293	0.0002896	-0.4826	-0.0002318	0.12033	5.7799E-05	480.3176337071437	130.34	1.4398	130.11	129.86	131.3	-0.22697					62	28	4	0	0	0	0.67509	1	12846	12846		23.042	1.3402	1	107540			23165	10485	18927	18950	25809	25809					0.14057299730359318
KGLGGSGG	8	Unmodified	_KGLGGSGG_					0	0	0		nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000126464|ENST00000418929|PRR12	nc|ENSG00000126464|Q9ULL5-2|PRR12	nc|ENSG00000126464|Q9ULL5-2|PRR12	MULTI-MSMS	OvCa99_classI_Rep5	1	632.3416137695312	1	632.336215	631.328939	1.5103	0.00095505	2.5913	0.0016386	4.1017	0.0025936	632.3391633634502	150.29	0.79865	150.29	150.05	150.84	0					21	15	3	0	0	0	0.73136	1	17602	17602		8.2313	0	1	70659			23166	3784	18928	18951	25810	25810					-0.0014725995075650644
KGLKASMKV	9	Unmodified	_KGLKASMKV_					0	0	0			REV__ENST00000586585.1_1_18:32953773-32954277:-|nuORF	REV__ENST00000586585.1_1_18:32953773-32954277:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	481.29583740234375	2	481.296788	960.579022	-1.2517	-0.00060245	-3.4862	-0.0016779	-4.738	-0.0022804	481.2950148812796	92.776	1.375	90.814	90.56	91.935	-1.9617					73	27	4	0	0	0	0.48047	1	5905	5905		44.377	0.26039	1	702020	+		23167	27867	18929	18952	25811	25811					0.09715581330488021
KGLKVELFHLP	11	Unmodified	_KGLKVELFHLP_					0	0	0			REV__ENSG00000140044|ENST00000651602|JDP2	REV__ENSG00000140044|ENST00000651602|JDP2	MULTI-MSMS	OvCa9_classI_Rep2	2	640.89013671875	2	640.889898	1279.76524	-0.17045	-0.00010924	0.2933	0.00018797	0.12285	7.8731E-05	640.8899760073222	130.96	1.1409	130.73	130.4	131.54	-0.22697					67	22	4	0	0	0	0.67529	2	12891	12877;12891		37.812	8.7852	1	368320	+		23168	19652	18930	18953	25812;25813	25813					0.13655101770632427
KGLLPQILE	9	Unmodified	_KGLLPQILE_					0	0	0		ENSG00000062822|ENST00000440232|POLD1	ENSG00000062822|ENST00000440232|POLD1	ENSG00000062822|ENST00000440232|POLD1	MULTI-MSMS	OvCa9_classI_Rep3	3	505.81500244140625	2	505.815867	1009.61718	-0.48831	-0.00024699	0.28405	0.00014368	-0.20426	-0.00010332	505.81591307909724	108.49	1.6556	107.29	106.96	108.61	-1.1978					47	31	2	0	0	0	0.27001	1	7748	7748		66.429	0	1	405310			23169	1281	18931	18954	25814	25814					0.11275790516810957
KGLMVVLSF	9	Unmodified	_KGLMVVLSF_					0	0	0			REV__ENST00000562945.2_1_16:34427877-34428027:-|nuORF	REV__ENST00000562945.2_1_16:34427877-34428027:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	497.29156494140625	2	497.293714	992.572874	-1.6621	-0.00082655	-1.85	-0.00092	-3.5121	-0.0017465	497.29260557297687	119.26	0.98497	119.09	118.81	119.79	-0.17138					45	19	3	0	0	0	0.50149	1	11491	11491		42.396	1.618	1	155600	+		23170	27651	18932	18955	25815	25815					0.07629063098966071
KGLPDDLTTI	10	Unmodified	_KGLPDDLTTI_					0	0	0			REV__ENST00000460295.1_1_3:38180152-38181542:+|nuORF	REV__ENST00000460295.1_1_3:38180152-38181542:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	537.2659912109375	2	536.797872	1071.58119	1.5812	0.00084877	-3.5928	-0.0019286	-2.0116	-0.0010798	536.7964893538734	106.91	0.5453	105.64	105.22	105.76	-1.267					16	10	2	0	0	0	0.026681	1	7531	7531		29.17	0	1	30390	+		23171	26078	18933	18956	25816	25816					0.0482628854927043
KGLPVTVIGH	10	Unmodified	_KGLPVTVIGH_					0	0	0		tr|A0A553SJX8|A0A553SJX8_NIACIAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitalphaOS=NialliacirculansOX=1397GN=accAPE=3SV=1	tr|A0A553SJX8|A0A553SJX8_NIACIAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitalphaOS=NialliacirculansOX=1397GN=accAPE=3SV=1	tr|A0A553SJX8|A0A553SJX8_NIACIAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitalphaOS=NialliacirculansOX=1397GN=accAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	510.81451416015625	2	510.813659	1019.61277	1.0663	0.00054468	-1.4764	-0.00075417	-0.41012	-0.00020949	510.8128294751169	128.19	1.0362	127.96	127.49	128.53	-0.22697					40	20	3	0	0	0	0.72319	1	12546	12546		27.882	2.4321	1	158260			23172	33550	18934	18957	25817	25817					0.10374326093904074
KGLSSLKI	8	Unmodified	_KGLSSLKI_					0	0	0			REV__tr|A0A553STR1|A0A553STR1_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_05360PE=3SV=1	REV__tr|A0A553STR1|A0A553STR1_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_05360PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	423.2749938964844	2	423.276378	844.538203	-1.5369	-0.00065052	-1.6206	-0.00068596	-3.1575	-0.0013365	423.27558847705467	140.82	1.576	139.79	139.38	140.96	-1.0339					74	31	4	0	0	0	0.74038	1	11605	11605		12.207	3.3845	1	296010	+		23173	31000	18935	18958	25818	25818					0.10971563282521402
KGLSSVLGRP	10	Unmodified	_KGLSSVLGRP_					0	0	0			REV__ENSG00000044090|ENST00000265348|CUL7	REV__ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.3087158203125	2	507.308741	1012.60293	-0.40408	-0.00020499	0.083523	4.2372E-05	-0.32056	-0.00016262	507.30861730397305	48.125	1.6313	45.018	44.287	45.918	-3.1077					79	31	5	0	0	0	0.45822	1	2648	2648		60.118	6.7668	1	675590	+		23174	16646	18936	18959	25819	25819					0.0971313808852301
KGLTGKVTRC	10	Unmodified	_KGLTGKVTRC_					0	0	0			REV__SGPL1-ADAMTS14|3|fusion	REV__SGPL1-ADAMTS14|3|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8075561523438	2	531.808051	1061.60155	0.28276	0.00015037	-0.58636	-0.00031183	-0.3036	-0.00016146	531.8079007382184	78.921	2.6239	76.581	76.315	78.939	-2.3399					123	51	3	0	0	0	0.35465	1	4224	4224		74.255	2.9593	1	1191000	+		23175	19528	18937	18960	25820	25820					0.07321180728104082
KGLTVPIAS	9	Unmodified	_KGLTVPIAS_					0	0	0		nc|ENSG00000163382|Q8NCW5-2|NAXE;ENSG00000163382|ENST00000368235|NAXE	nc|ENSG00000163382|Q8NCW5-2|NAXE	nc|ENSG00000163382|Q8NCW5-2|NAXE	MULTI-MSMS	OvCa9_classI_Rep3	3	443.2725524902344	2	443.273835	884.533118	-1.4905	-0.00066069	-1.4677	-0.00065059	-2.9582	-0.0013113	443.2730906196648	139.11	1.2789	138.05	137.68	138.96	-1.0595					59	25	3	0	0	0	0.67509	1	11421	11421		23.042	0	1	174030			23176	6297	18938	18961	25821	25821					0.08623259419880469
KGLVRLLEF	9	Unmodified	_KGLVRLLEF_					0	0	0			REV__nc|ENSG00000108443|P23443-4|RPS6KB1;REV__RPS6KB1-VMP1|5|fusion;REV__RPS6KB1-VMP1|4|fusion	REV__RPS6KB1-VMP1|5|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.2843017578125	2	537.837134	1073.65972	-0.75362	-0.00040533	0.31294	0.00016831	-0.44068	-0.00023701	537.8371172949333	68.782	0.83768	65.292	65.014	65.852	-3.4902					39	16	3	0	0	0	0.027462	1	5103	5103		25.574	2.5316	1	91484	+		23177	17888;29341;29342	18939	18962	25822	25822					0.12583185645053163
KGLWLGPG	8	Unmodified	_KGLWLGPG_					0	0	0			REV__nc|ENSG00000142102|Q32M88-2|PGGHG	REV__nc|ENSG00000142102|Q32M88-2|PGGHG	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.91162109375	2	414.242338	826.470124	0.20367	8.4367E-05	0.26109	0.00010816	0.46476	0.00019252	414.2424180969068	53.608	0.57598	53.608	53.432	54.008	0					17	13	2	0	0	0	0.028476	1	4261	4261		13.775	3.5906	1	223210	+		23178	26342	18940	18963	25823	25823					0.04994738422522005
KGMAIALAV	9	Unmodified	_KGMAIALAV_					0	0	0		ENSG00000169248|ENST00000306621|CXCL11	ENSG00000169248|ENST00000306621|CXCL11	ENSG00000169248|ENST00000306621|CXCL11	MULTI-MSMS	OvCa99_classI_Rep5	1	437.2662353515625	2	437.264956	872.515359	4.4471	0.0019446	-2.0604	-0.00090094	2.3867	0.0010436	437.26394597740097	97.589	0.60305	97.589	97.309	97.912	0					21	13	2	0	0	0	0.46377	1	10728	10728		45.952	0	1	687610			23179	6993	18941	18964	25824	25824					0.07400220893384812
KGMAIALAV	9	Unmodified	_KGMAIALAV_					0	0	0		ENSG00000169248|ENST00000306621|CXCL11	ENSG00000169248|ENST00000306621|CXCL11	ENSG00000169248|ENST00000306621|CXCL11	MULTI-MATCH	OvCa9_classI_Rep2	2		2	437.264956	872.515359	0.23614	0.00010325	-0.64011	-0.0002799	-0.40397	-0.00017664	437.2646021529104	98.575	0.5954	97.682	97.361	97.957	-0.89305	0.021341	0.00039123	NaN	45.952	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14008			23180	6993	18941	18964							0.07400220893384812
KGMAIALAV	9	Unmodified	_KGMAIALAV_					0	0	0		ENSG00000169248|ENST00000306621|CXCL11	ENSG00000169248|ENST00000306621|CXCL11	ENSG00000169248|ENST00000306621|CXCL11	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	437.264956	872.515359	-0.78551	-0.00034348	1.158	0.00050637	0.37252	0.00016289	437.2653295562512	100.04	0.6601	97.712	97.468	98.128	-2.3253	0.050973	0.0019638	NaN	45.952	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16166			23181	6993	18941	18964							0.07400220893384812
KGMDRPIVRLL	11	Unmodified	_KGMDRPIVRLL_					0	0	0			REV__ENST00000469741.6_1_19:41256312-41256444:-|nuORF	REV__ENST00000469741.6_1_19:41256312-41256444:-|nuORF	MSMS	OvCa99_classI_Rep5	1	649.3944091796875	2	649.392282	1296.77001	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.07	1	129.07	128.57	129.57	0								0	0	0	0.19474	1	14963	14963		28.081	4.5588	1		+		23182	26250	18942	18965	25825	25825					0.13349662641780924
KGMFLKLN	8	Unmodified	_KGMFLKLN_					0	0	0		ENSG00000165935|ENST00000535986|SMCO2	ENSG00000165935|ENST00000535986|SMCO2	ENSG00000165935|ENST00000535986|SMCO2	MULTI-MSMS	OvCa99_classI_Rep5	1	475.77813720703125	2	475.778231	949.541908	2.0392	0.00097021	-3.558	-0.0016928	-1.5188	-0.00072259	475.7764433705438	117.53	0.56552	117.53	117.27	117.84	0					26	11	3	0	0	0	0.7043	1	13463	13463		42.474	6.8562	1	215110			23183	6617	18943	18966	25826	25826					0.06511909784717318
KGMFLKLN	8	Unmodified	_KGMFLKLN_					0	0	0		ENSG00000165935|ENST00000535986|SMCO2	ENSG00000165935|ENST00000535986|SMCO2	ENSG00000165935|ENST00000535986|SMCO2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	475.778231	949.541908	0.73132	0.00034795	-4.6318	-0.0022037	-3.9004	-0.0018557	475.77556092948873	118.44	0.69437	117.41	117.14	117.83	-1.0271	-0.042401	-0.00092877	NaN	42.474	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21030			23184	6617	18943	18966							0.06511909784717318
KGMFLKLN	8	Unmodified	_KGMFLKLN_					0	0	0		ENSG00000165935|ENST00000535986|SMCO2	ENSG00000165935|ENST00000535986|SMCO2	ENSG00000165935|ENST00000535986|SMCO2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	475.778231	949.541908	-0.82587	-0.00039293	-2.5323	-0.0012048	-3.3582	-0.0015977	475.77649333074885	118.76	0.57901	117.42	117.15	117.73	-1.3444	-0.033851	0.001069	NaN	42.474	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24984			23185	6617	18943	18966							0.06511909784717318
KGMKKSGLI	9	Unmodified	_KGMKKSGLI_					0	0	0			REV__tr|A0A7D6ZT59|A0A7D6ZT59_9CLOTnon-specificprotein-tyrosinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18810PE=3SV=1	REV__tr|A0A7D6ZT59|A0A7D6ZT59_9CLOTnon-specificprotein-tyrosinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18810PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.29656982421875	2	481.296788	960.579022	-0.76225	-0.00036687	-3.4164	-0.0016443	-4.1786	-0.0020112	481.2950772231885	93.318	1.3581	90.81	90.513	91.871	-2.5072					61	28	4	0	0	0	0.37135	1	8137	8137		54.776	6.8607	1	573940	+		23186	32198	18944	18967	25827	25827					0.0971558133049939
KGMKSRLMKM	10	2 Oxidation (M)	_KGM(Oxidation (M))KSRLMKM(Oxidation (M))_		KGM(0.956)KSRLM(0.045)KM(0.999)		KGM(13)KSRLM(-13)KM(30)	0	0	2			REV__ENSG00000183206|ENST00000358970|POTEC	REV__ENSG00000183206|ENST00000358970|POTEC	MULTI-MSMS	OvCa9_classI_Rep2	2	414.5556640625	3	414.555744	1240.6454	-0.28529	-0.00011827	0.28734	0.00011912	0.0020549	8.5186E-07	414.5557903844835	55.46	1.3392	52.646	52.322	53.661	-2.8139					83	26	5	0	0	0	0.57535	1	3859	3859		45.022	11.983	3	295090	+		23187	21182	18945	18968	25828	25828		492;493			0.0347070583857203
KGMLLQKV	8	Unmodified	_KGMLLQKV_					0	0	0		nc|ENSG00000164031|Q8TBM8-2|DNAJB14;ENSG00000164031|ENST00000442697|DNAJB14	nc|ENSG00000164031|Q8TBM8-2|DNAJB14	nc|ENSG00000164031|Q8TBM8-2|DNAJB14	MULTI-MSMS	OvCa99_classI_Rep5	1	458.7870788574219	2	458.786056	915.557558	-0.25095	-0.00011513	0.25395	0.00011651	0.0030005	1.3766E-06	458.78603800657805	56.074	0.89947	56.074	55.845	56.744	0					38	21	3	0	0	0	0.23117	1	4626	4626		119.56	9.2196	1	2496300			23188	6394	18946	18969	25829	25829					0.09640196301768356
KGNIIGLISP	10	Unmodified	_KGNIIGLISP_					0	0	0			REV__ENSG00000116138|ENST00000375847|DNAJC16	REV__ENSG00000116138|ENST00000375847|DNAJC16	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.3133850097656	2	506.313492	1010.61243	0.40805	0.0002066	-0.804	-0.00040708	-0.39595	-0.00020048	506.3129386168965	109.98	0.89602	108.38	107.96	108.86	-1.6011					43	16	3	0	0	0	0.62299	1	10110	10110		39.253	3.6345	1	228160	+		23189	18286	18947	18970	25830	25830					0.1075490637402936
KGNIIGLISP	10	Unmodified	_KGNIIGLISP_					0	0	0			REV__ENSG00000116138|ENST00000375847|DNAJC16	REV__ENSG00000116138|ENST00000375847|DNAJC16	MULTI-MATCH	OvCa9_classI_Rep2	2		2	506.313492	1010.61243	-0.21834	-0.00011055	-0.09997	-5.0616E-05	-0.31831	-0.00016116	506.3132442165154	108.47	0.94043	108.24	107.83	108.77	-0.22498	-0.075611	0.00029935	NaN	39.253	48	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181590	+		23190	18286	18947	18970							0.1075490637402936
KGNIIGLISP	10	Unmodified	_KGNIIGLISP_					0	0	0			REV__ENSG00000116138|ENST00000375847|DNAJC16	REV__ENSG00000116138|ENST00000375847|DNAJC16	MULTI-MATCH	OvCa9_classI_Rep3	3		2	506.313492	1010.61243	-0.71079	-0.00035988	0.053825	2.7252E-05	-0.65697	-0.00033263	506.3133302498926	109.47	0.84129	108.33	107.93	108.77	-1.1444	0.012199	0.00045509	NaN	39.253	40	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216870	+		23191	18286	18947	18970							0.1075490637402936
KGNIIGLISP	10	Unmodified	_KGNIIGLISP_					0	0	0			REV__ENSG00000116138|ENST00000375847|DNAJC16	REV__ENSG00000116138|ENST00000375847|DNAJC16	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	506.313492	1010.61243	0.40805	0.0002066	-0.804	-0.00040708	-0.39595	-0.00020048	506.3129386168965	109.98	0.89602	108.38	107.96	108.86	-1.6011	0.063411	-0.00041357	NaN	39.253	43	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228160	+		23192	18286	18947	18970							0.1075490637402936
KGNKIIMT	8	Unmodified	_KGNKIIMT_					0	0	0		nc|ENSG00000159625|Q8IY82-2|DRC7;ENSG00000159625|ENST00000360716|DRC7	nc|ENSG00000159625|Q8IY82-2|DRC7	nc|ENSG00000159625|Q8IY82-2|DRC7	MULTI-MSMS	OvCa99_classI_Rep5	1	452.7684020996094	2	452.767863	903.521173	0.41483	0.00018782	-3.718	-0.0016834	-3.3032	-0.0014956	452.7660432761622	70.781	0.97871	70.781	70.528	71.507	0					47	24	4	0	0	0	0.62474	1	6803	6803		58.782	3.2778	1	3531800			23193	6021	18948	18971	25831	25831					0.06555319405072169
KGNRDKITF	9	Unmodified	_KGNRDKITF_					0	0	0			REV__nc|ENSG00000009307|O75534-2|CSDE1	REV__nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	OvCa99_classI_Rep5	1	539.808349609375	2	539.803823	1077.59309	0.16926	9.1368E-05	0.59023	0.00031861	0.75949	0.00040998	539.8042722246879	63.197	2.0961	63.197	62.976	65.072	0					86	51	4	0	0	0	0.34132	1	5707	5707		58.23	5.2932	1	3060400	+		23194	16463	18949	18972	25832	25832					0.05739950083102485
KGNSPLLQK	9	Unmodified	_KGNSPLLQK_					0	0	0		nc|ENSG00000100325|Q9H1I8-2|ASCC2;ENST00000458594.5_1_22:30197094-30223519:-|nuORF;nc|ENSG00000100325|Q9H1I8-3|ASCC2;ENSG00000100325|ENST00000307790|ASCC2;ENST00000465667.6_1_22:30218318-30228314:-|nuORF	nc|ENSG00000100325|Q9H1I8-2|ASCC2	nc|ENSG00000100325|Q9H1I8-2|ASCC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.7955627441406	2	492.795466	983.57638	-0.29625	-0.00014599	-0.23878	-0.00011767	-0.53503	-0.00026366	492.7952022570674	40.142	1.1854	37.188	36.863	38.049	-2.9541					43	22	3	0	0	0	0.57283	1	1709	1709		35.152	2.3396	1	132320			23195	2046	18950	18973	25833	25833					0.08393449197171776
KGNTKLIHL	9	Unmodified	_KGNTKLIHL_					0	0	0			REV__tr|A0A553SLL2|A0A553SLL2_NIACIPhosphatasePAP2familyproteinOS=NialliacirculansOX=1397GN=CEQ21_20820PE=4SV=1	REV__tr|A0A553SLL2|A0A553SLL2_NIACIPhosphatasePAP2familyproteinOS=NialliacirculansOX=1397GN=CEQ21_20820PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	512.3200073242188	2	512.319109	1022.62366	2.1621	0.0011077	-1.0162	-0.00052062	1.1459	0.00058706	512.3181923449624	82.405	0.88628	82.405	81.979	82.865	0					46	20	3	0	0	0	0.59259	1	8520	8520		32.812	1.2826	1	2956200	+		23196	30236	18951	18974	25834	25834					0.11325728468182206
KGNYLDEL	8	Unmodified	_KGNYLDEL_					0	0	0			REV__ENSG00000069345|ENST00000317089|DNAJA2	REV__ENSG00000069345|ENST00000317089|DNAJA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	476.77764892578125	2	476.242732	950.470912	2.8912	0.0013769	-0.36976	-0.00017609	2.5215	0.0012008	476.2423975535781	98.976	0.687	98.976	98.801	99.488	0					24	16	2	0	0	0	0.028476	1	10909	10909		34.173	0	1	570150	+		23197	16867	18952	18975	25835	25835					-0.00630511719111837
KGPAGQPGQL	10	Unmodified	_KGPAGQPGQL_					0	0	0			REV__nc|ENSG00000019169|Q9UEW3-2|MARCO	REV__nc|ENSG00000019169|Q9UEW3-2|MARCO	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.7661437988281	2	476.764166	951.513779	4.3953	0.0020955	0.31388	0.00014965	4.7092	0.0022452	476.7639873746901	131.99	0.67117	130.49	130.32	131	-1.5015					25	12	3	0	0	0	0.69073	1	12706	12706		31.53	3.2755	1	25008	+		23198	16534	18953	18976	25836	25836					0.036083031289877
KGPAGQPGQL	10	Unmodified	_KGPAGQPGQL_					0	0	0			REV__nc|ENSG00000019169|Q9UEW3-2|MARCO	REV__nc|ENSG00000019169|Q9UEW3-2|MARCO	MULTI-MATCH	OvCa9_classI_Rep3	3		2	476.764166	951.513779	0.80994	0.00038615	3.01	0.001435	3.8199	0.0018212	476.7655873217589	131.81	0.78448	130.68	130.1	130.89	-1.1249	0.097471	0.0010475	NaN	31.53	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11778	+		23199	16534	18953	18976							0.036083031289877
KGPAGQPGQL	10	Unmodified	_KGPAGQPGQL_					0	0	0			REV__nc|ENSG00000019169|Q9UEW3-2|MARCO	REV__nc|ENSG00000019169|Q9UEW3-2|MARCO	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	476.764166	951.513779	4.3953	0.0020955	0.31388	0.00014965	4.7092	0.0022452	476.7639873746901	131.99	0.67117	130.49	130.32	131	-1.5015	-0.097471	-0.0015233	NaN	31.53	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25008	+		23200	16534	18953	18976							0.036083031289877
KGPCLDPSLRS	11	Unmodified	_KGPCLDPSLRS_					0	0	0			REV__nc|ENSG00000183169|Q3SYA9|POM121L1P	REV__nc|ENSG00000183169|Q3SYA9|POM121L1P	MULTI-MSMS	OvCa9_classI_Rep2	2	586.8023071289062	2	586.808248	1171.60194	-5.211	-0.0030579	-3.6831	-0.0021613	-8.8941	-0.0052191	586.8058911238584	159.27	2.2635	159.04	158.53	160.79	-0.22696					99	45	3	0	0	0	0.7046	1	16205	16205		28.081	4.5588	1	107570	+		23201	29046	18954	18977	25837	25837					0.023005556572798014
KGPGPPSQKG	10	Unmodified	_KGPGPPSQKG_					0	0	0			REV__ENSG00000171940|ENST00000371471|ZNF217	REV__ENSG00000171940|ENST00000371471|ZNF217	MULTI-MSMS	OvCa99_classI_Rep5	1	476.7643737792969	2	476.764166	951.513779	-0.28104	-0.00013399	-0.34447	-0.00016423	-0.6255	-0.00029822	476.76395214884906	33.558	0.53898	33.558	33.285	33.824	0					15	10	2	0	0	0	0.53807	1	1555	1555		49.536	8.7579	1	132490	+		23202	21660	18955	18978	25838	25838					0.036083031289990686
KGPGPPSQKG	10	Unmodified	_KGPGPPSQKG_					0	0	0			REV__ENSG00000171940|ENST00000371471|ZNF217	REV__ENSG00000171940|ENST00000371471|ZNF217	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	476.764166	951.513779	-0.28104	-0.00013399	-0.34447	-0.00016423	-0.6255	-0.00029822	476.76395214884906	33.558	0.53898	33.558	33.285	33.824	0	0	0	NaN	49.536	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132490	+		23203	21660	18955	18978							0.036083031289990686
KGPIVESYIG	10	Unmodified	_KGPIVESYIG_					0	0	0		ENSG00000254986|ENST00000531863|DPP3;nc|ENSG00000254986|Q9NY33-4|DPP3	ENSG00000254986|ENST00000531863|DPP3	ENSG00000254986|ENST00000531863|DPP3	MULTI-SECPEP	OvCa9_classI_Rep2	2	531.8064575195312	2	531.795132	1061.57571	-2.8111	-0.0014949	-0.93267	-0.00049599	-3.7437	-0.0019909	531.7945066311366	34.991	0.44406	32.282	32.158	32.602	-2.7097					12	8	2	0	0	0	0.026891	1	1381	1381		47.657	4.7931	1	23301			23204	9450	18956	18979	25839	25839					0.04738609757464474
KGPKPPPGATI	11	Unmodified	_KGPKPPPGATI_					0	0	0			REV__tr|A0A7D6VSY8|A0A7D6VSY8_9CLOTL-lactatedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=ldhPE=3SV=1	REV__tr|A0A7D6VSY8|A0A7D6VSY8_9CLOTL-lactatedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=ldhPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8168334960938	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.71789	1	13851	13851		23.523	4.1627	1	166960	+		23205	31556	18957	18980	25840	25840					0.09498308748334239
KGPLRALVL	9	Unmodified	_KGPLRALVL_					0	0	0		ENSG00000165794|ENST00000298681|SLC39A2	ENSG00000165794|ENST00000298681|SLC39A2	ENSG00000165794|ENST00000298681|SLC39A2	MULTI-MSMS	OvCa9_classI_Rep3	3	483.8257751464844	2	483.826569	965.638586	-0.22688	-0.00010977	-0.22374	-0.00010825	-0.45063	-0.00021803	483.8263767801661	72.988	1.3382	70.501	70.133	71.471	-2.4873					75	26	5	0	0	0	0.55588	1	3560	3560		37.159	8.0096	1	1302500			23206	6598	18958	18981	25841	25841					0.1543922033616809
KGPSIKKNH	9	Unmodified	_KGPSIKKNH_					0	0	0		tr|A0A7D6ZHU6|A0A7D6ZHU6_9CLOTAlkalinephosphatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04320PE=4SV=1	tr|A0A7D6ZHU6|A0A7D6ZHU6_9CLOTAlkalinephosphatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04320PE=4SV=1	tr|A0A7D6ZHU6|A0A7D6ZHU6_9CLOTAlkalinephosphatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04320PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	504.8012390136719	2	504.801083	1007.58761	-1.3473	-0.00068012	1.0581	0.00053415	-0.28917	-0.00014597	504.80145583104496	39.099	1.0401	36.39	36.112	37.152	-2.7097					52	20	4	0	0	0	0.5811	1	1909	1909		34.173	5.023	1	219820			23207	35590	18959	18982	25842	25842					0.0841227129130857
KGPSNIIAILP	11	Unmodified	_KGPSNIIAILP_					0	0	0			REV__ENSG00000034533|ENST00000264992|ASTE1	REV__ENSG00000034533|ENST00000264992|ASTE1	MULTI-MSMS	OvCa9_classI_Rep3	3	561.8455200195312	2	561.847699	1121.68084	-5.3491	-0.0030054	1.7307	0.0009724	-3.6184	-0.002033	561.8485776281088	152.58	1.5019	151.61	151.19	152.7	-0.97299					81	30	4	0	0	0	0.70865	1	13052	13052		26.693	2.4902	1	218830	+		23208	16596	18960	18983	25843	25843					0.12487150953870696
KGPTTLVL	8	Unmodified	_KGPTTLVL_					0	0	0			REV__ENSG00000042781|ENST00000307340|USH2A	REV__ENSG00000042781|ENST00000307340|USH2A	MULTI-MSMS	OvCa9_classI_Rep3	3	414.76171875	2	414.763104	827.511654	-1.3763	-0.00057084	-1.7682	-0.00073337	-3.1445	-0.0013042	414.7623056204016	140.83	3.4972	139.8	137.66	141.16	-1.0339					138	70	4	0	0	0	0.74754	1	11591	11591		27.882	1.0861	1	1080700	+		23209	16642	18961	18984	25844	25844					0.09099874391188223
KGQFPIPSI	9	Unmodified	_KGQFPIPSI_					0	0	0		nc|ENSG00000104972|Q8NHL6-5|LILRB1;nc|ENSG00000104972|Q8NHL6|LILRB1;nc|ENSG00000104972|Q8NHL6-4|LILRB1;nc|ENSG00000104972|Q8NHL6-2|LILRB1;nc|ENSG00000104972|Q8NHL6-3|LILRB1;ENSG00000104972|ENST00000324602|LILRB1;LILRA1|p.V78M|1|0.03|ENSG00000104974|chr19:54594826-54594826|G/A|missense_variant;ENST00000473156.5_1_19:55105185-55107230:+|nuORF;nc|ENSG00000104974|O75019-2|LILRA1;ENST00000495417.5_1_19:55105185-55110756:+|nuORF;ENSG00000104974|ENST00000251372|LILRA1	nc|ENSG00000104972|Q8NHL6-5|LILRB1	nc|ENSG00000104972|Q8NHL6-5|LILRB1	MULTI-MSMS	OvCa9_classI_Rep2	2	493.7857971191406	2	493.78711	985.559667	-0.2692	-0.00013293	-0.32819	-0.00016205	-0.59738	-0.00029498	493.7867393201552	121.47	1.3357	121.27	120.95	122.29	-0.19718					61	26	3	0	0	0	0.35444	1	11773	11773		56.721	3.7844	1	176810			23210	2412	18962	18985	25845	25845					0.06630948311226348
KGQFPVVLN	9	Unmodified	_KGQFPVVLN_					0	0	0			REV__ENSG00000086967|ENST00000357701|MYBPC2	REV__ENSG00000086967|ENST00000357701|MYBPC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.2558898925781	2	501.292559	1000.57057	-0.46773	-0.00023447	3.7176	0.0018636	3.2498	0.0016291	501.7954375670455	48.017	0.34995	48.017	47.854	48.204	0					18	7	3	0	0	0	0.027462	1	3510	3510		16.473	2.6978	1	324800	+		23211	17153	18963	18986	25846	25846					0.07030350685511166
KGQFQQEI	8	Unmodified	_KGQFQQEI_					0	0	0			REV__USP40|p.E747Tfs*8|1|0.22|ENSG00000085982|chr2:233521060-233521075|GAGCCAGTCAATCTCA/-|frameshift_variant	REV__USP40|p.E747Tfs*8|1|0.22|ENSG00000085982|chr2:233521060-233521075|GAGCCAGTCAATCTCA/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	489.2915344238281	2	489.256174	976.497795	-0.36296	-0.00017758	0.67374	0.00032963	0.31077	0.00015205	489.2563123475979	60.331	0.58079	57.56	57.238	57.819	-2.7702					19	10	2	0	0	0	0.028476	1	4426	4426		47.916	0	1	36311	+		23212	17142	18964	18987	25847	25847					0.00860596892096055
KGQFVAINS	9	Unmodified	_KGQFVAINS_					0	0	0			REV__ENSG00000151304|ENST00000339397|SRFBP1	REV__ENSG00000151304|ENST00000339397|SRFBP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	481.277099609375	2	482.266542	962.51853	0.21451	0.00010345	-1.2932	-0.00062369	-1.0787	-0.00052024	482.2656434629964	82.523	0.46941	80.924	80.697	81.167	-1.5989					12	8	2	0	0	0	0.027461	1	7020	7020		40.778	5.1599	1	16438	+		23213	20222	18965	18988	25848	25848					0.03577187271741877
KGQKIQKK	8	Unmodified	_KGQKIQKK_					0	0	0		TRMT2B|p.S66I|1|0.03|ENSG00000188917|chrX:101042093-101042093|C/A|missense_variant	TRMT2B|p.S66I|1|0.03|ENSG00000188917|chrX:101042093-101042093|C/A|missense_variant	TRMT2B|p.S66I|1|0.03|ENSG00000188917|chrX:101042093-101042093|C/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	480.2745056152344	2	479.313826	956.613099	-0.14661	-7.027E-05	4.203	0.0020146	4.0564	0.0019443	479.3157110035839	94.629	1.2032	92.733	92.46	93.664	-1.8956					42	23	3	0	0	0	0.028476	1	6163	6163		18.324	3.4595	1	56922			23214	36282	18966	18989	25849	25849					0.13305745813738667
KGQTKGREED	10	Unmodified	_KGQTKGREED_					0	0	0			REV__ENSG00000099381|ENST00000262519|SETD1A	REV__ENSG00000099381|ENST00000262519|SETD1A	MULTI-MSMS	OvCa9_classI_Rep2	2	574.2896118164062	2	574.288734	1146.56291	2.2976	0.0013195	0.25055	0.00014389	2.5481	0.0014634	574.2887813624243	26.093	0.82673	23.383	23.246	24.073	-2.7097					33	20	3	0	0	0	0.84374	1	322	322		13.454	0	1	76649	+		23215	17325	18967	18990	25850	25850					-0.004504533727413218
KGRKFRIF	8	Unmodified	_KGRKFRIF_					0	0	0			REV__tr|A0A7D6VTC5|A0A7D6VTC5_9CLOTProbablemultidrugresistanceproteinNorMOS=ClostridiumintestinaleOX=36845GN=HZF06_20710PE=4SV=1	REV__tr|A0A7D6VTC5|A0A7D6VTC5_9CLOTProbablemultidrugresistanceproteinNorMOS=ClostridiumintestinaleOX=36845GN=HZF06_20710PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.8436279296875	2	526.329811	1050.64507	-0.39465	-0.00020772	-3.7046	-0.0019499	-4.0993	-0.0021576	526.327619045159	38.558	1.2897	35.632	35.354	36.643	-2.9264					50	25	3	0	0	0	0.028476	1	1497	1497		8.2313	0	1	89020	+		23216	31593	18968	18991	25851	25851					0.12177158287545353
KGRLLTLD	8	Unmodified	_KGRLLTLD_					0	0	0		tr|A0A553SMG1|A0A553SMG1_NIACIRhamnogalacturonanlyaseOS=NialliacirculansOX=1397GN=CEQ21_22500PE=4SV=1	tr|A0A553SMG1|A0A553SMG1_NIACIRhamnogalacturonanlyaseOS=NialliacirculansOX=1397GN=CEQ21_22500PE=4SV=1	tr|A0A553SMG1|A0A553SMG1_NIACIRhamnogalacturonanlyaseOS=NialliacirculansOX=1397GN=CEQ21_22500PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.8763122558594	2	458.284734	914.554916	0.15406	7.0603E-05	-0.46794	-0.00021445	-0.31389	-0.00014385	458.28435478520026	31.633	0.39686	31.633	31.361	31.757	0					9	7	2	0	0	0	0.028476	1	1301	1301		16.473	0	1	58888			23217	33828	18969	18992	25852	25852					0.09422064168461475
KGRSVIRVG	9	Unmodified	_KGRSVIRVG_					0	0	0			REV__ENSG00000253873|ENST00000398587|PCDHGA11	REV__ENSG00000253873|ENST00000398587|PCDHGA11	MULTI-MSMS	OvCa9_classI_Rep3	3	486.31097412109375	2	486.309075	970.603597	0.91435	0.00044466	4.2285	0.0020564	5.1428	0.002501	486.31179030634246	123.42	1.603	122.39	122.15	123.75	-1.0377					64	30	3	0	0	0	0.50149	1	9554	9554		42.396	8.2236	1	196800	+		23218	23509	18970	18993	25853	25853					0.11711977528239004
KGRTRLRIHK	10	Unmodified	_KGRTRLRIHK_					0	0	0			REV__ENSG00000188321|ENST00000603380|ZNF559	REV__ENSG00000188321|ENST00000603380|ZNF559	MULTI-SECPEP	OvCa9_classI_Rep3	3	422.9383544921875	3	422.273945	1263.80001	1.86	0.00078541	0.69141	0.00029196	2.5514	0.0010774	422.2740711238941	65.357	0.3553	62.412	62.198	62.554	-2.9459					9	6	2	0	0	0	0.027446	1	2589	2589		10.587	0.4829	1	10196	+		23219	22705	18971	18994	25854	25854					0.17865782421949916
KGRTRLRIHK	10	Unmodified	_KGRTRLRIHK_					0	0	0			REV__ENSG00000188321|ENST00000603380|ZNF559	REV__ENSG00000188321|ENST00000603380|ZNF559	MULTI-MATCH	OvCa9_classI_Rep2	2		3	422.273945	1263.80001	0.4861	0.00020527	1.8419	0.0007778	2.328	0.00098307	422.2746374492728	64.826	1.2283	62.102	61.864	63.092	-2.7245	-0.17406	-0.00027803	NaN	10.587	55	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210180	+		23220	22705	18971	18994							0.17865782421949916
KGRTRLRIHK	10	Unmodified	_KGRTRLRIHK_					0	0	0			REV__ENSG00000188321|ENST00000603380|ZNF559	REV__ENSG00000188321|ENST00000603380|ZNF559	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	422.273945	1263.80001	-1.099	-0.00046406	2.8757	0.0012143	1.7768	0.00075028	422.27511984874957	65.8	0.92176	62.314	62.034	62.956	-3.4854	0.038419	0.0010316	NaN	10.587	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185570	+		23221	22705	18971	18994							0.17865782421949916
KGRVFTTI	8	Unmodified	_KGRVFTTI_					0	0	0			REV__ENSG00000109436|ENST00000442267|TBC1D9	REV__ENSG00000109436|ENST00000442267|TBC1D9	MULTI-MSMS	OvCa9_classI_Rep4_	4	461.27978515625	2	461.279452	920.544351	-0.85588	-0.0003948	0.23951	0.00011048	-0.61637	-0.00028432	461.27929554311106	79.571	1.3381	76.82	76.038	77.376	-2.7514					47	27	3	0	0	0	0.7224	1	6473	6473		38.806	0	1	212890	+		23222	17928	18972	18995	25855	25855					0.08090081514046688
KGRVFTTI	8	Unmodified	_KGRVFTTI_					0	0	0			REV__ENSG00000109436|ENST00000442267|TBC1D9	REV__ENSG00000109436|ENST00000442267|TBC1D9	MULTI-MATCH	OvCa9_classI_Rep2	2		2	461.279452	920.544351	-0.027208	-1.255E-05	0.0031684	1.4615E-06	-0.024039	-1.1089E-05	461.2791501961131	78.522	1.5259	76.782	76.039	77.565	-1.7398	0.11659	-7.4493E-06	NaN	38.806	61	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79087	+		23223	17928	18972	18995							0.08090081514046688
KGRVFTTI	8	Unmodified	_KGRVFTTI_					0	0	0			REV__ENSG00000109436|ENST00000442267|TBC1D9	REV__ENSG00000109436|ENST00000442267|TBC1D9	MULTI-MATCH	OvCa9_classI_Rep3	3		2	461.279452	920.544351	-0.21913	-0.00010108	-0.073102	-3.3721E-05	-0.29224	-0.0001348	461.2792373750835	78.748	1.5981	76.395	75.698	77.296	-2.3527	-0.27044	-7.7813E-05	NaN	38.806	58	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240320	+		23224	17928	18972	18995							0.08090081514046688
KGSGPGLPKL	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))KGSGPGLPKL_					1	0	0			REV__nc|ENSG00000142973|P13584|CYP4B1	REV__nc|ENSG00000142973|P13584|CYP4B1	MULTI-MSMS	OvCa99_classI_Rep5	1	498.3016052246094	2	498.297842	994.581131	1.5824	0.0007885	4.0011	0.0019938	5.5835	0.0027823	498.29934150307986	135.13	1.1332	135.13	134.7	135.83	0					52	24	4	0	0	0	0.26627	1	15770	15770		84.916	10.66	1	403340	+		23225	19810	18973	18996	25856	25856					0.08362333339925954
KGSQPRLL	8	Unmodified	_KGSQPRLL_					0	0	0		ENST00000254661.4_1_2:238820647-238820698:+|nuORF	ENST00000254661.4_1_2:238820647-238820698:+|nuORF	ENST00000254661.4_1_2:238820647-238820698:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	449.7792053222656	2	449.777077	897.5396	1.6671	0.00074983	2.6592	0.0011961	4.3263	0.0019459	449.77816595523103	112.76	1.0815	111.69	111.22	112.3	-1.0753					58	21	3	0	0	0	0.60899	1	8273	8273		62.107	0	1	557310			23226	9814	18974	18997	25857	25857					0.08673197371274455
KGTGQPASSLL	11	Unmodified	_KGTGQPASSLL_					0	0	0		ENST00000303714.8_1_2:69298889-69300186:+|nuORF	ENST00000303714.8_1_2:69298889-69300186:+|nuORF	ENST00000303714.8_1_2:69298889-69300186:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	529.7940063476562	2	529.795663	1057.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	152.3	1	150.86	150.36	151.36	-1.435								0	0	0	0.19474	1	15067	15067		24.519	0	1				23227	10218	18975	18998	25858	25858					0.05028824126384279
KGTHRIKQIN	10	Unmodified	_KGTHRIKQIN_					0	0	0			REV__ENSG00000118620|ENST00000261560|ZNF430	REV__ENSG00000118620|ENST00000261560|ZNF430	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.85595703125	2	597.856921	1193.69929	-0.38237	-0.0002286	-0.55263	-0.00033039	-0.935	-0.00055899	597.8564103488146	145.14	4.0194	143.71	141.51	145.53	-1.4357					229	77	4	0	0	0	0.79213	1	14311	14311		19.997	0	1	217250	+		23228	18409	18976	18999	25859	25859					0.11018705648461946
KGTLSITTTE	10	Unmodified	_KGTLSITTTE_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA	ENSG00000172915|ENST00000379939|NBEA	ENSG00000172915|ENST00000379939|NBEA	MULTI-MSMS	OvCa99_classI_Rep5	1	525.7876586914062	2	525.787504	1049.56045	-0.20937	-0.00011008	1.1908	0.00062609	0.9814	0.00051601	525.7879684206529	31.584	0.39711	31.584	31.41	31.807	0					11	7	2	0	0	0	0.62299	1	1315	1315		39.253	0.23134	1	213070			23229	7329	18977	19000	25860	25860					0.037656981695818104
KGVEVLKGK	9	Unmodified	_KGVEVLKGK_					0	0	0			REV__nc|ENSG00000293416|E5RG02|PRSS46P	REV__nc|ENSG00000293416|E5RG02|PRSS46P	MULTI-SECPEP	OvCa9_classI_Rep3	3	480.27459716796875	2	479.30821	956.601866	0.55029	0.00026376	-1.1739	-0.00056264	-0.62357	-0.00029888	479.3074952345062	79.406	0.75412	77.066	76.657	77.412	-2.3399					19	14	2	0	0	0	0.027462	1	4290	4290		27.882	11.409	1	16606	+		23230	29222	18978	19001	25861	25861					0.12182923719603878
KGVGSGAFIGL	11	Unmodified	_KGVGSGAFIGL_					0	0	0			REV__tr|A0A553SNZ4|A0A553SNZ4_NIACIFlagellarproteinexportATPaseFliIOS=NialliacirculansOX=1397GN=fliIPE=4SV=1	REV__tr|A0A553SNZ4|A0A553SNZ4_NIACIFlagellarproteinexportATPaseFliIOS=NialliacirculansOX=1397GN=fliIPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	503.2758483886719	2	503.290017	1004.56548	-0.1189	-5.9843E-05	-1.2484	-0.00062831	-1.3673	-0.00068815	503.2891789861049	82.378	0.91953	80.78	80.54	81.46	-1.5988					34	17	3	0	0	0	0.026007	1	7086	7086		18.262	0	1	40995	+		23231	30473	18979	19002	25862	25862					0.06338046822895649
KGVGSGAFIGL	11	Unmodified	_KGVGSGAFIGL_					0	0	0			REV__tr|A0A553SNZ4|A0A553SNZ4_NIACIFlagellarproteinexportATPaseFliIOS=NialliacirculansOX=1397GN=fliIPE=4SV=1	REV__tr|A0A553SNZ4|A0A553SNZ4_NIACIFlagellarproteinexportATPaseFliIOS=NialliacirculansOX=1397GN=fliIPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	503.290017	1004.56548	-0.42982	-0.00021632	-0.33467	-0.00016844	-0.76449	-0.00038476	503.2896538070702	83.596	0.63298	80.933	80.632	81.265	-2.6629	0.13769	-0.00037912	NaN	36.447	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83271	+		23232	30473	18979	19002							0.06338046822895649
KGVHYEIEL	9	Unmodified	_KGVHYEIEL_					0	0	0		tr|A0A7D7A262|A0A7D7A262_9CLOTSpermidine/putrescineimportATP-bindingproteinPotAOS=ClostridiumintestinaleOX=36845GN=potAPE=3SV=1	tr|A0A7D7A262|A0A7D7A262_9CLOTSpermidine/putrescineimportATP-bindingproteinPotAOS=ClostridiumintestinaleOX=36845GN=potAPE=3SV=1	tr|A0A7D7A262|A0A7D7A262_9CLOTSpermidine/putrescineimportATP-bindingproteinPotAOS=ClostridiumintestinaleOX=36845GN=potAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	544.293701171875	2	544.292756	1086.57096	2.0417	0.0011113	0.86084	0.00046855	2.9025	0.0015798	544.2933357859856	91.408	0.54076	91.408	91.296	91.837	0					21	12	2	0	0	0	0.21231	1	9852	9852		74.255	7.8258	1	1136300			23233	36065	18980	19003	25863	25863					0.031137256146848813
KGVHYEIEL	9	Unmodified	_KGVHYEIEL_					0	0	0		tr|A0A7D7A262|A0A7D7A262_9CLOTSpermidine/putrescineimportATP-bindingproteinPotAOS=ClostridiumintestinaleOX=36845GN=potAPE=3SV=1	tr|A0A7D7A262|A0A7D7A262_9CLOTSpermidine/putrescineimportATP-bindingproteinPotAOS=ClostridiumintestinaleOX=36845GN=potAPE=3SV=1	tr|A0A7D7A262|A0A7D7A262_9CLOTSpermidine/putrescineimportATP-bindingproteinPotAOS=ClostridiumintestinaleOX=36845GN=potAPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	544.292756	1086.57096	-0.077805	-4.2349E-05	1.5815	0.0008608	1.5037	0.00081845	544.2932265752295	92.797	0.86707	91.629	91.394	92.261	-1.168	0.085799	0.0007575	NaN	74.255	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104570			23234	36065	18980	19003							0.031137256146848813
KGVHYEIEL	9	Unmodified	_KGVHYEIEL_					0	0	0		tr|A0A7D7A262|A0A7D7A262_9CLOTSpermidine/putrescineimportATP-bindingproteinPotAOS=ClostridiumintestinaleOX=36845GN=potAPE=3SV=1	tr|A0A7D7A262|A0A7D7A262_9CLOTSpermidine/putrescineimportATP-bindingproteinPotAOS=ClostridiumintestinaleOX=36845GN=potAPE=3SV=1	tr|A0A7D7A262|A0A7D7A262_9CLOTSpermidine/putrescineimportATP-bindingproteinPotAOS=ClostridiumintestinaleOX=36845GN=potAPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	544.292756	1086.57096	-1.2138	-0.00066068	1.189	0.00064715	-0.024864	-1.3533E-05	544.2934331137427	93.497	0.70628	91.535	91.228	91.935	-1.9617	-0.007735	0.0003302	NaN	74.255	39	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105890			23235	36065	18980	19003							0.031137256146848813
KGVHYEIEL	9	Unmodified	_KGVHYEIEL_					0	0	0		tr|A0A7D7A262|A0A7D7A262_9CLOTSpermidine/putrescineimportATP-bindingproteinPotAOS=ClostridiumintestinaleOX=36845GN=potAPE=3SV=1	tr|A0A7D7A262|A0A7D7A262_9CLOTSpermidine/putrescineimportATP-bindingproteinPotAOS=ClostridiumintestinaleOX=36845GN=potAPE=3SV=1	tr|A0A7D7A262|A0A7D7A262_9CLOTSpermidine/putrescineimportATP-bindingproteinPotAOS=ClostridiumintestinaleOX=36845GN=potAPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	544.292756	1086.57096	-0.90196	-0.00049093	0.24539	0.00013356	-0.65656	-0.00035736	544.2927918286466	94.087	0.81376	91.6	91.277	92.091	-2.4873	0.056828	-0.00069697	NaN	74.255	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140860			23236	36065	18980	19003							0.031137256146848813
KGVIPLTAIE	10	Unmodified	_KGVIPLTAIE_					0	0	0		ENSG00000120318|ENST00000239440|ARAP3;ARAP3|p.M1385Dfs*25|1|0.05|ENSG00000120318|chr5:141654432-141654433|-/C|frameshift_variant	ENSG00000120318|ENST00000239440|ARAP3	ENSG00000120318|ENST00000239440|ARAP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.7486572265625	2	520.82115	1039.62775	1.0456	0.00054459	0.24451	0.00012735	1.2902	0.00067194	520.8211434221247	148.87	0.39243	148.87	148.62	149.01	0					13	7	2	0	0	0	0.027028	1	17439	17439		18.262	0	1	32424			23237	103	18981	19004	25864	25864					0.10951773171223067
KGVKNREL	8	Unmodified	_KGVKNREL_					0	0	0		ENST00000521800.1_1_5:78180947-78181633:-|nuORF;nc|ENSG00000113273|P15848-2|ARSB;ENSG00000113273|ENST00000264914|ARSB	ENST00000521800.1_1_5:78180947-78181633:-|nuORF	ENST00000521800.1_1_5:78180947-78181633:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	472.2872009277344	2	472.287808	942.561064	-3.3723	-0.0015927	3.3552	0.0015846	-0.017057	-8.0558E-06	472.2892568382278	150.85	1.4757	150.62	150.22	151.7	-0.22697					85	29	4	0	0	0	0.75208	1	15366	15366		17.365	0.66	1	396600			23238	2959	18982	19005	25865	25865					0.08748582399982752
KGVLCSDCV	9	Unmodified	_KGVLCSDCV_					0	0	0		chr3:124769111-124796388|87|10.97|0.11|6.58|-|2|None,ITGB5|1	chr3:124769111-124796388|87|10.97|0.11|6.58|-|2|None,ITGB5|1	chr3:124769111-124796388|87|10.97|0.11|6.58|-|2|None,ITGB5|1	MULTI-MSMS	OvCa99_classI_Rep5	1	462.22100830078125	2	462.219888	922.425224	2.1609	0.0009988	-0.39586	-0.00018298	1.765	0.00081583	462.2197583583028	97.031	0.98584	97.031	96.753	97.738	0					53	22	4	0	0	0	0.11171	2	10654	10632;10654		94.006	8.6469	1	6339300			23239	468	18983	19006	25866;25867	25867					-0.03909196497340872
KGVRKAADL	9	Unmodified	_KGVRKAADL_					0	0	0		ENST00000557186.5_1_14:102606326-102662237:+|nuORF;nc|ENSG00000140153|Q8TBZ3-3|WDR20;ENSG00000140153|ENST00000342702|WDR20;nc|ENSG00000140153|Q8TBZ3-2|WDR20;nc|ENSG00000140153|Q8TBZ3-7|WDR20	ENST00000557186.5_1_14:102606326-102662237:+|nuORF	ENST00000557186.5_1_14:102606326-102662237:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	480.27301025390625	2	479.295633	956.576714	-0.25533	-0.00012238	-0.079547	-3.8126E-05	-0.33488	-0.00016051	479.29472307002635	78.328	1.9453	76.588	75.777	77.722	-1.7398					82	37	3	0	0	0	0.027455	1	6665	6665		19.997	0	1	153780			23240	4825	18984	19007	25868	25868					0.09668868917015061
KGVWVATILP	10	Unmodified	_KGVWVATILP_					0	0	0		ENST00000375206.6_1_9:100008408-100053768:+|nuORF;ENST00000375204.2_1_9:100008408-100054866:+|nuORF;ENST00000527128.5_1_9:100008408-100053855:+|nuORF	ENST00000375206.6_1_9:100008408-100053768:+|nuORF	ENST00000375206.6_1_9:100008408-100053768:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.7359619140625	2	542.331685	1082.64882	0.72989	0.00039584	-1.1509	-0.00062416	-0.42099	-0.00022831	542.3314669073733	140.27	0.61118	140.27	140.07	140.68	0					21	12	2	0	0	0	0.027021	1	16416	16416		15.642	0	1	55486			23241	11051	18985	19008	25869	25869					0.11079783270747612
KGWRGWPE	8	Unmodified	_KGWRGWPE_					0	0	0			REV__nc|ENSG00000172367|Q86UT5-4|NHERF4	REV__nc|ENSG00000172367|Q86UT5-4|NHERF4	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.2882995605469	2	508.259051	1014.50355	2.0877	0.0010611	-0.96509	-0.00049052	1.1226	0.00057057	508.25859455685935	99.899	0.33258	99.899	99.694	100.03	0					11	7	2	0	0	0	0.028476	1	11034	11034		29.15	0	1	368910	+		23242	29007	18986	19009	25870	25870					-0.00312259805582471
KHCKLATI	8	Unmodified	_KHCKLATI_					0	0	0			REV__ENSG00000160445|ENST00000291900|ZER1	REV__ENSG00000160445|ENST00000291900|ZER1	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.3148498535156	2	457.26803	912.521507	0.019448	8.8932E-06	1.2444	0.00056901	1.2638	0.00057791	457.26853437432226	71.13	0.31442	71.13	70.994	71.308	0					9	7	2	0	0	0	0.028476	1	6874	6874		33.516	5.2613	1	310030	+		23243	20659	18987	19010	25871	25871					0.061747391249241446
KHDPQLRPVI	10	Unmodified	_KHDPQLRPVI_					0	0	0		tr|A0A7D6ZZ32|A0A7D6ZZ32_9CLOTProbableM18familyaminopeptidase2OS=ClostridiumintestinaleOX=36845GN=apeBPE=3SV=1	tr|A0A7D6ZZ32|A0A7D6ZZ32_9CLOTProbableM18familyaminopeptidase2OS=ClostridiumintestinaleOX=36845GN=apeBPE=3SV=1	tr|A0A7D6ZZ32|A0A7D6ZZ32_9CLOTProbableM18familyaminopeptidase2OS=ClostridiumintestinaleOX=36845GN=apeBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.23419189453125	3	401.571657	1201.69314	1.48	0.00059432	3.1003	0.001245	4.5803	0.0018393	401.5732191051867	32.08	0.39695	32.08	31.757	32.154	0					11	7	2	0	0	0	0.026739	1	1345	1345		53.089	6.6322	1	14838			23244	35941	18988	19011	25872	25872					0.1003618741694936
KHENEPDA	8	Unmodified	_KHENEPDA_					0	0	0			REV__tr|A0A553SHR0|A0A553SHR0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13420PE=4SV=1	REV__tr|A0A553SHR0|A0A553SHR0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13420PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	470.21087646484375	2	470.211963	938.409374	2.1981	0.0010336	-3.8593	-0.0018147	-1.6612	-0.00078112	470.21001642698747	112.03	1.3309	110.92	110.6	111.93	-1.1038					73	26	4	0	0	0	0.68714	1	8184	8184		45.952	1.4209	1	545760	+		23245	29826	18989	19012	25873	25873					-0.06229443418385472
KHFDNCHSM	9	Unmodified	_KHFDNCHSM_					0	0	0			REV__ENST00000319653.13_1_1:240637457-240637514:+|nuORF	REV__ENST00000319653.13_1_1:240637457-240637514:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.2523193359375	2	559.728943	1117.44333	1.796	0.0010053	-3.4377	-0.0019242	-1.6417	-0.00091889	560.2269370800474	67.254	0.24854	63.764	63.689	63.938	-3.4902					5	4	2	0	0	0	0.027462	1	4927	4927		21.96	0	1	7102	+		23246	24436	18990	19013	25874	25874					-0.11069061522630363
KHFKLKEL	8	Unmodified	_KHFKLKEL_					0	0	0			REV__tr|A0A7D6VQ70|A0A7D6VQ70_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19005PE=4SV=1	REV__tr|A0A7D6VQ70|A0A7D6VQ70_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19005PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.845947265625	2	521.824027	1041.6335	1.934	0.0010092	0.50664	0.00026438	2.4407	0.0012736	521.8241413508126	121.68	0.698	121.68	121.38	122.08	0					42	14	4	0	0	0	0.028476	1	13973	13973		23.042	0	1	1386900	+		23247	31302	18991	19014	25875	25875					0.11434916473581325
KHFSKAKKMP	10	Unmodified	_KHFSKAKKMP_					0	0	0		CON__Q1A7A4	CON__Q1A7A4	CON__Q1A7A4	MULTI-MSMS	OvCa99_classI_Rep5	1	601.3468017578125	2	601.347343	1200.68013	0.27229	0.00016374	-0.31172	-0.00018745	-0.039429	-2.3711E-05	601.3465968765114	31.889	0.44685	31.889	31.708	32.154	0					27	8	5	0	0	0	0.45788	1	1351	1351		56.434	8.4743	1	257320		+	23248	636	18992	19015	25876	25876					0.08782033033207881
KHFSKAKKMP	10	Unmodified	_KHFSKAKKMP_					0	0	0		CON__Q1A7A4	CON__Q1A7A4	CON__Q1A7A4	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	601.347343	1200.68013	1.4259	0.00085743	0.6411	0.00038552	2.067	0.001243	601.3476543886991	34.969	0.95424	32.12	31.835	32.79	-2.849	0.1154	5.5361E-05	NaN	56.434	44	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123230		+	23249	636	18992	19015							0.08782033033207881
KHFVIIGF	8	Unmodified	_KHFVIIGF_					0	0	0			REV__tr|A0A553SR61|A0A553SR61_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00385PE=4SV=1	REV__tr|A0A553SR61|A0A553SR61_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00385PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.2481384277344	2	480.786913	959.559273	0.29335	0.00014104	-2.2108	-0.0010629	-1.9174	-0.00092187	480.7858329439796	47.948	0.152	44.84	44.736	44.888	-3.1077					4	2	2	0	0	0	0.028476	1	2615	2615		23.037	4.7123	1	8022.3	+		23250	30696	18993	19016	25877	25877					0.0778757338205196
KHGIKKGG	8	Unmodified	_KHGIKKGG_					0	0	0		tr|A0A553SKI6|A0A553SKI6_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_18735PE=3SV=1	tr|A0A553SKI6|A0A553SKI6_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_18735PE=3SV=1	tr|A0A553SKI6|A0A553SKI6_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_18735PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	412.74603271484375	2	412.758687	823.502821	3.1952	0.0013188	0.42582	0.00017576	3.621	0.0014946	412.7585686982068	135.66	0.2467	134.12	134.01	134.25	-1.5437					6	4	2	0	0	0	0.028476	1	13145	13145		14.664	13.336	1	5040.4			23251	33620	18994	19017	25878	25878					0.0840094554538382
KHHERHPLRER	11	Unmodified	_KHHERHPLRER_					0	0	0		ENST00000425802.1_1_1:52499214-52509659:+|nuORF	ENST00000425802.1_1_1:52499214-52509659:+|nuORF	ENST00000425802.1_1_1:52499214-52509659:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.9436340332031	3	498.943147	1493.80761	0.10419	5.1986E-05	0.02572	1.2833E-05	0.12991	6.4819E-05	498.9431829113185	80.386	6.5904	78.69	78.321	84.911	-1.6951					347	130	6	0	0	0	0.52255	2	6789	6789;6795		51.727	9.4845	1	5429500			23252	11726	18995	19018	25879;25880	25879					0.08045889951586105
KHHERHPLRER	11	Unmodified	_KHHERHPLRER_					0	0	0		ENST00000425802.1_1_1:52499214-52509659:+|nuORF	ENST00000425802.1_1_1:52499214-52509659:+|nuORF	ENST00000425802.1_1_1:52499214-52509659:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.94464111328125	3	498.943147	1493.80761	-1.0023	-0.00050008	1.2088	0.00060311	0.20649	0.00010303	498.9437780016878	81.177	4.5443	78.467	78.101	82.645	-2.7106					241	93	6	0	0	0	0.68299	1	6691	6691		35.496	12.934	1	6586900			23253	11726	18995	19018	25881	25881					0.08045889951586105
KHHVVSDAN	9	Unmodified	_KHHVVSDAN_					0	0	0			REV__nc|ENSG00000155052|Q8WYK1|CNTNAP5	REV__nc|ENSG00000155052|Q8WYK1|CNTNAP5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.7643127441406	2	503.756872	1005.49919	-0.50057	-0.00025216	-0.31058	-0.00015646	-0.81114	-0.00040862	503.75654576350763	62.229	0.57051	58.771	58.244	58.815	-3.4577					13	11	2	0	0	0	0.027455	1	4275	4275		51.335	12.083	1	94032	+		23254	20410	18996	19019	25882	25882					-0.0033376901915289636
KHIRLNEPK	9	Unmodified	_KHIRLNEPK_					0	0	0			REV__ENST00000373242.6_1_10:71921657-71930191:-|nuORF	REV__ENST00000373242.6_1_10:71921657-71930191:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.8606567382812	2	567.840739	1133.66693	2.2188	0.0012599	4.0883	0.0023215	6.307	0.0035814	567.8431320018632	99.931	0.54074	99.931	99.652	100.19	0					20	12	2	0	0	0	0.027462	1	11051	11051		35.618	18.253	1	401550	+		23255	25034	18997	19020	25883	25883					0.10543918245457462
KHISIANIH	9	Unmodified	_KHISIANIH_					0	0	0		tr|A0A7D7A0L9|A0A7D7A0L9_9CLOTTyrosine-typerecombinase/integraseOS=ClostridiumintestinaleOX=36845GN=HZF06_00635PE=4SV=1	tr|A0A7D7A0L9|A0A7D7A0L9_9CLOTTyrosine-typerecombinase/integraseOS=ClostridiumintestinaleOX=36845GN=HZF06_00635PE=4SV=1	tr|A0A7D7A0L9|A0A7D7A0L9_9CLOTTyrosine-typerecombinase/integraseOS=ClostridiumintestinaleOX=36845GN=HZF06_00635PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	516.8191528320312	2	516.801083	1031.58761	-2.5563	-0.0013211	2.2426	0.001159	-0.31365	-0.00016209	516.8021232955682	36.54	0.64072	33.831	33.647	34.287	-2.7097					17	12	2	0	0	0	0.027462	1	1595	1595		34.173	12.213	1	26609			23256	35999	18998	19021	25884	25884					0.07308271291321944
KHKLFIGG	8	Unmodified	_KHKLFIGG_					0	0	0			REV__tr|A0A553STJ1|A0A553STJ1_NIACIAntibioticbiosynthesismonooxygenaseOS=NialliacirculansOX=1397GN=CEQ21_04915PE=4SV=1	REV__tr|A0A553STJ1|A0A553STJ1_NIACIAntibioticbiosynthesismonooxygenaseOS=NialliacirculansOX=1397GN=CEQ21_04915PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	450.27435302734375	2	450.276712	898.538872	-0.13529	-6.0919E-05	-4.3763	-0.0019706	-4.5116	-0.0020315	450.27464677011136	147.54	1.7967	147.31	146.82	148.62	-0.22696					100	35	5	0	0	0	0.74361	1	14926	14926		29.842	4.3914	1	344090	+		23257	30972	18999	19022	25885	25885					0.08554402722222676
KHKLFIGG	8	Unmodified	_KHKLFIGG_					0	0	0			REV__tr|A0A553STJ1|A0A553STJ1_NIACIAntibioticbiosynthesismonooxygenaseOS=NialliacirculansOX=1397GN=CEQ21_04915PE=4SV=1	REV__tr|A0A553STJ1|A0A553STJ1_NIACIAntibioticbiosynthesismonooxygenaseOS=NialliacirculansOX=1397GN=CEQ21_04915PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.2738952636719	2	450.276712	898.538872	-1.3925	-0.00062703	-3.0957	-0.0013939	-4.4883	-0.002021	450.2752805302911	148.27	1.3965	146.84	146.48	147.87	-1.435					87	28	5	0	0	0	0.75991	1	14612	14612		21.702	1.2205	1	541000	+		23258	30972	18999	19022	25886	25886					0.08554402722222676
KHKLISVAEKT	11	Unmodified	_KHKLISVAEKT_					0	0	0			REV__nc|ENSG00000204644|Q9NU63|ZFP57	REV__nc|ENSG00000204644|Q9NU63|ZFP57	MULTI-MSMS	OvCa99_classI_Rep5	1	627.3853149414062	2	627.382437	1252.75032	0.45246	0.00028386	-0.20501	-0.00012862	0.24745	0.00015525	627.381941059398	164.3	2.2705	164.3	163.48	165.75	0					225	84	3	0	0	0	0.70142	1	19147	19147		29.17	4.6509	1	178050	+		23259	23175	19000	19023	25887	25887					0.1340560990265658
KHKLKIIK	8	Unmodified	_KHKLKIIK_					0	0	0		ENSG00000064270|ENST00000262429|ATP2C2;nc|ENSG00000064270|O75185-2|ATP2C2;nc|ENSG00000064270|O75185-3|ATP2C2	ENSG00000064270|ENST00000262429|ATP2C2	ENSG00000064270|ENST00000262429|ATP2C2	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.3272705078125	2	504.358037	1006.70152	-0.87498	-0.00044131	-2.6272	-0.0013251	-3.5022	-0.0017664	504.35712556183825	26.717	0.24958	26.717	26.542	26.792	0					5	4	2	0	0	0	0.028476	1	707	707		19.36	0	1	10669			23260	1296	19001	19024	25888	25888					0.19843786124215512
KHKLSQAPL	9	Unmodified	_KHKLSQAPL_					0	0	0		TSC1|p.R721Qfs*9|1|0.87|ENSG00000165699|chr9:132903687-132903697|GATCACCTTGC/-|frameshift_variant;ENSG00000165699|ENST00000298552|TSC1;ENST00000493467.5_1_9:135785858-135804259:-|nuORF	TSC1|p.R721Qfs*9|1|0.87|ENSG00000165699|chr9:132903687-132903697|GATCACCTTGC/-|frameshift_variant	TSC1|p.R721Qfs*9|1|0.87|ENSG00000165699|chr9:132903687-132903697|GATCACCTTGC/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.3072509765625	2	511.311284	1020.60801	0.87113	0.00044542	0.061249	3.1317E-05	0.93238	0.00047674	511.3110935760723	74.525	0.43264	74.525	74.286	74.718	0					18	10	2	0	0	0	0.027462	1	7346	7346		35.618	5.1146	1	276010			23261	6594	19002	19025	25889	25889					0.09853441951122477
KHKPSNLAL	9	Unmodified	_KHKPSNLAL_					0	0	0		ENSG00000148826|ENST00000368592|NKX6-2	ENSG00000148826|ENST00000368592|NKX6-2	ENSG00000148826|ENST00000368592|NKX6-2	MULTI-MSMS	OvCa99_classI_Rep5	1	504.30804443359375	2	504.303458	1006.59236	-0.26306	-0.00013266	-0.018526	-9.3425E-06	-0.28159	-0.00014201	504.30334268879056	58.719	0.93673	58.719	58.403	59.34	0					51	23	4	0	0	0	0.46356	1	5009	5009		45.972	15.469	1	7331300			23262	5425	19003	19026	25890	25890					0.08933155434078799
KHKPSNLAL	9	Unmodified	_KHKPSNLAL_					0	0	0		ENSG00000148826|ENST00000368592|NKX6-2	ENSG00000148826|ENST00000368592|NKX6-2	ENSG00000148826|ENST00000368592|NKX6-2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	504.303458	1006.59236	-0.41191	-0.00020773	0.30622	0.00015443	-0.10569	-5.33E-05	504.30231828948104	61.956	0.28449	58.498	58.382	58.667	-3.4577	-0.11048	0.00031499	NaN	45.972	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10354			23263	5425	19003	19026							0.08933155434078799
KHKRQMQDP	9	Unmodified	_KHKRQMQDP_					0	0	0		ENSG00000151650|ENST00000325980|VENTX	ENSG00000151650|ENST00000325980|VENTX	ENSG00000151650|ENST00000325980|VENTX	MULTI-SECPEP	OvCa9_classI_Rep4_	4	583.8169555664062	2	584.306207	1166.59786	-1.132	-0.00066145	-2.2359	-0.0013065	-3.368	-0.0019679	584.304725096794	82.783	0.87845	80.1	79.684	80.563	-2.6829					26	17	2	0	0	0	0.027453	1	6809	6809		54.776	31.254	1	100610			23264	5572	19004	19027	25891	25891					0.02122510954268364
KHKRQMQDP	9	Unmodified	_KHKRQMQDP_					0	0	0		ENSG00000151650|ENST00000325980|VENTX	ENSG00000151650|ENST00000325980|VENTX	ENSG00000151650|ENST00000325980|VENTX	MULTI-MATCH	OvCa9_classI_Rep3	3		2	584.306207	1166.59786	-2.2449	-0.0013117	-1.2519	-0.00073149	-3.4968	-0.0020432	584.3053024515945	82.525	1.2336	80.229	79.988	81.222	-2.2963	0.064136	0.00023076	NaN	37.812	37	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105790			23265	5572	19004	19027							0.02122510954268364
KHKSVDKGE	9	Unmodified	_KHKSVDKGE_					0	0	0			REV__nc|ENSG00000034677|Q9NV58-2|RNF19A	REV__nc|ENSG00000034677|Q9NV58-2|RNF19A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.7670288085938	2	514.28018	1026.54581	-1.1009	-0.00056615	-0.28275	-0.00014541	-1.3836	-0.00071156	514.2813313750413	45.922	0.20973	42.85	42.666	42.876	-3.0724					5	3	2	0	0	0	0.027462	1	2369	2369		10.866	0	1	3876.6	+		23266	16597	19005	19028	25892	25892					0.0335967081216495
KHLELAVKA	9	Unmodified	_KHLELAVKA_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000034412	REV__CON__ENSEMBL:ENSBTAP00000034412	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.2367248535156	2	504.813659	1007.61277	-0.41053	-0.00020724	0.19718	9.9542E-05	-0.21334	-0.0001077	504.81360083341923	40.549	0.45478	40.549	40.34	40.795	0					23	9	4	0	0	0	0.027441	1	2461	2461		32.812	6.1195	1	274790	+	+	23267	16176	19006	19029	25893	25893					0.10926326093886018
KHLIFERIYIL	11	Unmodified	_KHLIFERIYIL_					0	0	0			REV__ENST00000510175.5_1_4:155055-155787:+|nuORF	REV__ENST00000510175.5_1_4:155055-155787:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.7575988769531	3	482.294012	1443.86021	0.47622	0.00022968	4.4851	0.0021631	4.9613	0.0023928	482.2961610429129	37.892	0.49807	35	34.791	35.289	-2.8925					16	9	2	0	0	0	0.02625	1	1462	1462		18.531	12.21	1	19022	+		23268	26936	19007	19030	25894	25894					0.15603035241861107
KHLKKCNSR	9	Unmodified	_KHLKKCNSR_					0	0	0		nc|ENSG00000122435|Q9NUP7-2|TRMT13;ENSG00000122435|ENST00000370141|TRMT13	nc|ENSG00000122435|Q9NUP7-2|TRMT13	nc|ENSG00000122435|Q9NUP7-2|TRMT13	MULTI-SECPEP	OvCa9_classI_Rep2	2	557.8026733398438	2	557.319117	1112.62368	1.2714	0.00070859	2.2074	0.0012302	3.4788	0.0019388	557.3207775383787	66.314	0.54686	63.618	63.368	63.915	-2.6958					17	10	2	0	0	0	0.027447	1	5149	5149		47.657	3.5405	1	20059			23269	3532	19008	19031	25895	25895					0.07187405196532382
KHLKKCNSR	9	Unmodified	_KHLKKCNSR_					0	0	0		nc|ENSG00000122435|Q9NUP7-2|TRMT13;ENSG00000122435|ENST00000370141|TRMT13	nc|ENSG00000122435|Q9NUP7-2|TRMT13	nc|ENSG00000122435|Q9NUP7-2|TRMT13	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	557.319117	1112.62368	1.3333	0.00074309	3.3194	0.00185	4.6528	0.0025931	557.3210121857124	67.276	0.54585	63.786	63.492	64.037	-3.4902	0.084162	0.00069245	NaN	47.657	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31011			23270	3532	19008	19031							0.07187405196532382
KHLKRVAE	8	Unmodified	_KHLKRVAE_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.7815246582031	2	490.803626	979.592698	-1.0381	-0.00050949	0.54417	0.00026708	-0.4939	-0.00024241	490.80432834072013	49.966	0.25983	49.966	49.813	50.073	0					13	5	3	0	0	0	0.028476	1	3748	3748		13.775	0	1	423700	+		23271	18991	19009	19032	25896	25896					0.10208575153933452
KHLRNDMV	8	Unmodified	_KHLRNDMV_					0	0	0			REV__ENSG00000175073|ENST00000310421|VCPIP1	REV__ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MSMS	OvCa99_classI_Rep5	1	506.77496337890625	2	506.771468	1011.52838	1.9347	0.00098045	4.0396	0.0020471	5.9743	0.0030276	506.7732972381633	117.53	0.61244	117.53	117.23	117.84	0					18	12	2	0	0	0	0.72896	1	13457	13457		37.159	3.6435	1	293180	+		23272	21867	19010	19033	25897	25897					0.023080520054804765
KHLVSASTGK	10	Unmodified	_KHLVSASTGK_					0	0	0		tr|A0A553SLW2|A0A553SLW2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_21385PE=4SV=1	tr|A0A553SLW2|A0A553SLW2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_21385PE=4SV=1	tr|A0A553SLW2|A0A553SLW2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_21385PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	514.779541015625	2	514.298373	1026.58219	0.45709	0.00023508	3.2528	0.0016729	3.7099	0.001908	514.3001025508477	72.579	1.5887	69.976	69.62	71.209	-2.6023					47	31	2	0	0	0	0.026931	1	3564	3564		30.318	0	1	93856			23273	33770	19011	19034	25898	25898					0.0699654770885445
KHLVYANET	9	Unmodified	_KHLVYANET_					0	0	0			REV__tr|A0A553SK48|A0A553SK48_NIACIsuccinatedehydrogenaseOS=NialliacirculansOX=1397GN=sdhAPE=3SV=1	REV__tr|A0A553SK48|A0A553SK48_NIACIsuccinatedehydrogenaseOS=NialliacirculansOX=1397GN=sdhAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.77490234375	2	537.782556	1073.55056	-1.4182	-0.00076267	4.4463	0.0023911	3.0281	0.0016285	537.7849587540319	104.36	1.0218	104.36	104.02	105.04	0					40	23	2	0	0	0	0.027462	1	11658	11658		27.882	0	1	682460	+		23274	30076	19012	19035	25899	25899					0.01672554954870975
KHNLLDRA	8	Unmodified	_KHNLLDRA_					0	0	0			REV__ENSG00000109111|ENST00000314616|SUPT6H	REV__ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	OvCa99_classI_Rep5	1	483.7781066894531	2	483.777608	965.540663	-0.50303	-0.00024336	0.50223	0.00024297	-0.00080286	-3.8841E-07	483.7776978787734	24.763	0.50634	24.763	24.586	25.092	0					15	9	2	0	0	0	0.66704	1	484	484		50.025	0	1	307240	+		23275	17918	19013	19036	25900	25900					0.056514117401775366
KHPPRVDEV	9	Unmodified	_KHPPRVDEV_					0	0	0			REV__ENST00000491743.1_1_2:102484451-102486278:+|nuORF	REV__ENST00000491743.1_1_2:102484451-102486278:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.8211669921875	2	538.795998	1075.57744	-0.16097	-8.673E-05	-0.54912	-0.00029586	-0.71009	-0.00038259	538.796959802243	105.03	0.81802	105.03	104.49	105.31	0					34	18	3	0	0	0	0.027461	1	11730	11730		32.812	1.2826	1	276990	+		23276	16897	19014	19037	25901	25901					0.04267663566088231
KHPVPIPLPSP	11	Unmodified	_KHPVPIPLPSP_					0	0	0		ENST00000253401.10_1_X:62974617-62974755:-|nuORF	ENST00000253401.10_1_X:62974617-62974755:-|nuORF	ENST00000253401.10_1_X:62974617-62974755:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	591.361328125	2	591.355691	1180.69683	-0.18923	-0.0001119	3.5193	0.0020812	3.3301	0.0019693	591.3562587131781	130	2.1652	128.88	128.64	130.8	-1.1121					72	43	3	0	0	0	0.71498	1	10312	10312		24.519	0.99649	1	89398			23277	9805	19015	19038	25902	25902					0.1137085719078641
KHQELWER	8	Unmodified	_KHQELWER_					0	0	0			REV__ENST00000538042.1_1_11:63766130-63766847:-|nuORF	REV__ENST00000538042.1_1_11:63766130-63766847:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.2161254882812	2	563.293622	1124.57269	0.26216	0.00014767	3.5565	0.0020034	3.8187	0.002151	563.7977411688431	30.138	0.25037	30.138	29.986	30.236	0					7	4	2	0	0	0	0.028476	1	1138	1138		37.812	0	1	11792	+		23278	19141	19016	19039	25903	25903					0.01538779423322012
KHQWQKQHKL	10	Unmodified	_KHQWQKQHKL_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|49|1|sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|49|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	454.7524108886719	3	454.258072	1359.75239	-0.22012	-9.9993E-05	-1.0421	-0.0004734	-1.2623	-0.00057339	454.25727905576423	70.39	0.4318	70.39	70.21	70.641	0					13	10	2	0	0	0	0.027033	1	6740	6740		20.837	7.8797	1	179460	+		23279	28482	19017	19040	25904	25904					0.08690083431133644
KHQWQKQHKL	10	Unmodified	_KHQWQKQHKL_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|49|1|sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|49|1|sense	MULTI-MATCH	OvCa9_classI_Rep2	2		3	454.258072	1359.75239	1.5668	0.00071173	-1.9073	-0.00086642	-0.34053	-0.00015469	454.5914137763746	72.811	0.88657	70.411	70.167	71.054	-2.3999	-0.12927	-0.00075501	NaN	20.837	30	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23361	+		23280	28482	19017	19040							0.08690083431133644
KHQWQKQHKL	10	Unmodified	_KHQWQKQHKL_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|49|1|sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|49|1|sense	MULTI-MATCH	OvCa9_classI_Rep3	3		3	454.258072	1359.75239	0.061671	2.8014E-05	-1.0876	-0.00049405	-1.0259	-0.00046603	454.25767125894134	73.03	0.89227	70.543	70.232	71.125	-2.4873	0.0028043	0.00036211	NaN	20.837	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44340	+		23281	28482	19017	19040							0.08690083431133644
KHQWQKQHKL	10	Unmodified	_KHQWQKQHKL_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|49|1|sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|49|1|sense	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	454.258072	1359.75239	-0.04516	-2.0514E-05	-1.4786	-0.00067167	-1.5238	-0.00069218	454.25708433646776	74.048	0.5173	70.817	70.723	71.24	-3.2308	0.27686	-0.00017074	NaN	20.837	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31177	+		23282	28482	19017	19040							0.08690083431133644
KHRAVFGISIK	11	Unmodified	_KHRAVFGISIK_					0	0	0		tr|A0A7D6ZVV3|A0A7D6ZVV3_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15260PE=4SV=1	tr|A0A7D6ZVV3|A0A7D6ZVV3_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15260PE=4SV=1	tr|A0A7D6ZVV3|A0A7D6ZVV3_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15260PE=4SV=1	MSMS	OvCa9_classI_Rep4_	4	628.3819580078125	2	628.385314	1254.75608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	150.2	1	148.77	148.27	149.27	-1.4344								0	0	0	0.19474	1	14832	14832		21.686	0.73882	1				23283	35816	19018	19041	25905	25905					0.13888753204969362
KHRKEKKV	8	Unmodified	_KHRKEKKV_					0	0	0		NKTR|p.R430H|1|0.14|ENSG00000114857|chr3:42636993-42636993|G/A|missense_variant	NKTR|p.R430H|1|0.14|ENSG00000114857|chr3:42636993-42636993|G/A|missense_variant	NKTR|p.R430H|1|0.14|ENSG00000114857|chr3:42636993-42636993|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.31689453125	2	526.838	1051.66145	1.1606	0.00061144	2.0127	0.0010604	3.1733	0.0016718	526.8388974844553	123.18	0.51665	123.18	123	123.51	0					14	10	2	0	0	0	0.028476	1	14228	14228		19.36	0	1	63552			23284	15432	19019	19042	25906	25906					0.1376823945365686
KHRLGFLLQ	9	Unmodified	_KHRLGFLLQ_					0	0	0		nc|ENSG00000117152|P49798-5|RGS4;nc|ENSG00000117152|P49798-2|RGS4;ENSG00000117152|ENST00000367909|RGS4;nc|ENSG00000117152|P49798-3|RGS4;nc|ENSG00000117152|P49798-4|RGS4;ENST00000491263.1_1_1:163039244-163042290:+|nuORF	nc|ENSG00000117152|P49798-5|RGS4	nc|ENSG00000117152|P49798-5|RGS4	MULTI-MSMS	OvCa99_classI_Rep5	1	556.3399658203125	2	556.340375	1110.6662	0.24003	0.00013354	-0.67483	-0.00037544	-0.43481	-0.0002419	556.339891753401	30.956	0.77768	30.956	30.682	31.46	0					44	15	4	0	0	0	0.6653	1	1226	1226		24.203	5.8783	1	364920			23285	3240	19020	19043	25907	25907					0.11529123596415047
KHSHTLQEV	9	Unmodified	_KHSHTLQEV_					0	0	0		ENST00000526004.1_1_14:25101006-25102204:-|nuORF;ENSG00000100453|ENST00000216341|GZMB	ENST00000526004.1_1_14:25101006-25102204:-|nuORF	ENST00000526004.1_1_14:25101006-25102204:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	539.788330078125	2	539.78563	1077.55671	-0.06839	-3.6916E-05	3.5652	0.0019244	3.4968	0.0018875	539.7874460950948	95.969	2.1666	94.141	93.582	95.749	-1.8286					93	42	4	0	0	0	0.35694	1	6306	6306		56.434	0	1	697310			23286	2071	19021	19044	25908	25908					0.02103073186435722
KHSIKVSLGG	10	Unmodified	_KHSIKVSLGG_					0	0	0		CON__Q3KUS7	CON__Q3KUS7	CON__Q3KUS7	MULTI-MSMS	OvCa99_classI_Rep5	1	513.3134765625	2	513.308741	1024.60293	-0.21894	-0.00011238	4.1645	0.0021377	3.9456	0.0020253	513.3107760483713	104.95	0.8735	104.95	104.7	105.57	0					54	19	4	0	0	0	0.1722	1	11760	11760		98.629	19.178	1	7945300		+	23287	647	19022	19045	25909	25909					0.09161138088529697
KHSSASVK	8	Unmodified	_KHSSASVK_					0	0	0		L1P2_dup1497|chr19:20226195-20227139:-|1.0833442391613386|0.1594826865315493|2.76|428.0|16|2|sense	L1P2_dup1497|chr19:20226195-20227139:-|1.0833442391613386|0.1594826865315493|2.76|428.0|16|2|sense	L1P2_dup1497|chr19:20226195-20227139:-|1.0833442391613386|0.1594826865315493|2.76|428.0|16|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	423.23504638671875	2	422.237784	842.461016	0.03461	1.4614E-05	-0.020021	-8.4537E-06	0.014589	6.1601E-06	422.238439949233	42.914	0.94009	42.914	42.329	43.27	0					42	21	4	0	0	0	0.028476	1	2731	2731		31.53	1.0262	1	192080			23288	14638	19023	19046	25910	25910					0.033483450661947245
KHTKCPRNVD	10	Unmodified	_KHTKCPRNVD_					0	0	0		nc|ENSG00000290798|Q9H1B4-5|NXF5;nc|ENSG00000290798|Q9H1B4-4|NXF5;nc|ENSG00000290798|Q9H1B4-6|NXF5;nc|ENSG00000290798|Q9H1B4-2|NXF5;nc|ENSG00000290798|Q9H1B4|NXF5	nc|ENSG00000290798|Q9H1B4-5|NXF5	nc|ENSG00000290798|Q9H1B4-5|NXF5	MULTI-SECPEP	OvCa9_classI_Rep2	2	598.3539428710938	2	599.311489	1196.60842	0.090575	5.4282E-05	-0.64087	-0.00038408	-0.55029	-0.0003298	599.3111528111922	113.26	1.7766	113.14	112.38	114.15	-0.12174					84	35	4	0	0	0	0.027062	1	10729	10729		32.751	4.669	1	121510			23289	15396	19024	19047	25911	25911					0.017984936086577363
KHVERPASD	9	Unmodified	_KHVERPASD_					0	0	0		ENSG00000124177|ENST00000373233|CHD6;CHD6|p.A1178Dfs*18|1|0.01|ENSG00000124177|chr20:41451096-41451097|-/GT|frameshift_variant;CHD6|p.K1913Nfs*11|1|0.03|ENSG00000124177|chr20:41420896-41420897|-/TTGCCATGGCGATAGTA|frameshift_variant;nc|ENSG00000124177|Q8TD26-3|CHD6	ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	MULTI-MSMS	OvCa9_classI_Rep2	2	519.77099609375	2	519.76998	1037.52541	-0.69853	-0.00036307	1.3867	0.00072076	0.68816	0.00035769	519.7700861063805	55.572	1.2406	52.768	52.282	53.523	-2.804					60	24	3	0	0	0	0.53483	1	3883	3883		39.253	0.44669	1	305630			23290	3630	19025	19048	25912	25912					0.008145001523189421
KHVKTGRLC	9	Unmodified	_KHVKTGRLC_					0	0	0			REV__ENSG00000166509|ENST00000299642|CLEC3A	REV__ENSG00000166509|ENST00000299642|CLEC3A	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.2810668945312	2	521.302936	1040.59132	1.9419	0.0010123	-3.5486	-0.0018499	-1.6067	-0.00083758	521.3007273616622	91.603	0.59259	91.603	91.372	91.964	0					22	13	2	0	0	0	0.027462	1	9862	9862		26.693	10.22	1	2553900	+		23291	21202	19026	19049	25913	25913					0.07264617793543948
KHVVTANKDL	10	Unmodified	_KHVVTANKDL_					0	0	0		tr|A0A553SJJ2|A0A553SJJ2_NIACIHomoserinedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16790PE=3SV=1;tr|A0A7D6VUH6|A0A7D6VUH6_9CLOTHomoserinedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20610PE=3SV=1	tr|A0A553SJJ2|A0A553SJJ2_NIACIHomoserinedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16790PE=3SV=1	tr|A0A553SJJ2|A0A553SJJ2_NIACIHomoserinedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16790PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	562.8280029296875	2	562.824755	1123.63496	2.5982	0.0014623	3.5583	0.0020027	6.1565	0.003465	562.8264310259613	82.291	1.0992	82.291	81.979	83.078	0					76	25	7	0	0	0	0.22663	1	8512	8512		90.37	2.6155	1	6963000			23292	33510	19027	19050	25914	25914					0.07808505771640739
KIAARSIRP	9	Unmodified	_KIAARSIRP_					0	0	0			REV__ENST00000285679.10_1_21:17205778-17214762:+|nuORF	REV__ENST00000285679.10_1_21:17205778-17214762:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	506.3258056640625	2	506.324725	1010.6349	-0.44613	-0.00022589	0.23229	0.00011761	-0.21384	-0.00010827	506.32470614075066	55.497	0.69532	55.497	55.193	55.888	0					43	16	4	0	0	0	0.38529	1	4542	4542		53.351	5.4358	1	3797000	+		23293	24134	19028	19051	25915	25915					0.1300055056231031
KIAARSIRP	9	Unmodified	_KIAARSIRP_					0	0	0			REV__ENST00000285679.10_1_21:17205778-17214762:+|nuORF	REV__ENST00000285679.10_1_21:17205778-17214762:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	506.324725	1010.6349	-0.82811	-0.00041929	3.5846	0.001815	2.7565	0.0013957	506.3263597475159	58.326	0.30453	55.542	55.381	55.685	-2.7841	0.02235	0.0031983	NaN	53.351	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8403	+		23294	24134	19028	19051							0.1300055056231031
KIADRFLLY	9	Unmodified	_KIADRFLLY_					0	0	0		ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	MULTI-MSMS	OvCa9_classI_Rep2	2	569.8341064453125	2	569.834591	1137.65463	-0.84571	-0.00048192	-0.21981	-0.00012526	-1.0655	-0.00060717	569.8345191856214	98.031	6.1334	97.138	96.776	102.91	-0.89305					325	123	5	0	0	0	0.036986	23	8877	8872;8877;8883;8889;8895;8901;8907;8913;8919;8926;8932;8938;8944;8956;8962;8968;8979;8987;8994;9000;9011;9030;9036		129.42	49.97	1	9613600			23295	5005	19029	19052	25916;25917;25918;25919;25920;25921;25922;25923;25924;25925;25926;25927;25928;25929;25930;25931;25932;25933;25934;25935;25936;25937;25938	25917					0.09130881782425604
KIADRFLLY	9	Unmodified	_KIADRFLLY_					0	0	0		ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	MULTI-MSMS	OvCa9_classI_Rep3	3	569.8370361328125	2	569.834591	1137.65463	-0.6563	-0.00037398	-0.12934	-7.3703E-05	-0.78564	-0.00044768	569.8345222869018	99.284	4.3485	97.599	97.322	101.67	-1.685					272	84	6	0	0	0	0.055627	22	6767	6659;6665;6670;6682;6688;6694;6700;6712;6718;6724;6730;6736;6744;6750;6755;6761;6767;6772;6784;6791;6815;6822		115.49	32.96	1	12084000			23296	5005	19029	19052	25939;25940;25941;25942;25943;25944;25945;25946;25947;25948;25949;25950;25951;25952;25953;25954;25955;25956;25957;25958;25959;25960	25955					0.09130881782425604
KIADRFLLY	9	Unmodified	_KIADRFLLY_					0	0	0		ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	ENSG00000143013|ENST00000370544|LMO4	MULTI-MSMS	OvCa9_classI_Rep4_	4	569.8359985351562	2	569.834591	1137.65463	-0.75134	-0.00042814	-0.049233	-2.8055E-05	-0.80058	-0.0004562	569.8345397385756	99.869	5.0637	97.543	97.212	102.28	-2.3253					291	98	6	0	0	0	0.066102	15	8978	8895;8906;8918;8930;8942;8954;8966;8978;8990;9002;9014;9038;9051;9064;9114		109.48	26.209	1	9449400			23297	5005	19029	19052	25961;25962;25963;25964;25965;25966;25967;25968;25969;25970;25971;25972;25973;25974;25975	25968					0.09130881782425604
KIADYTAW	8	Unmodified	_KIADYTAW_					0	0	0			REV__tr|A0A553ST75|A0A553ST75_NIACIChemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_04505PE=4SV=1	REV__tr|A0A553ST75|A0A553ST75_NIACIChemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_04505PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.76153564453125	2	484.247818	966.481082	-0.3711	-0.00017971	-3.4083	-0.0016505	-3.7794	-0.0018302	484.2459771975953	40.601	0.54382	40.601	40.294	40.838	0					20	11	3	0	0	0	0.028476	1	2501	2501		12.207	0	1	170570	+		23298	30925	19030	19053	25976	25976					-0.0034990399387879734
KIAESIRK	8	Unmodified	_KIAESIRK_					0	0	0			REV__tr|A0A553SML1|A0A553SML1_NIACICatalaseOS=NialliacirculansOX=1397GN=CEQ21_22670PE=3SV=1	REV__tr|A0A553SML1|A0A553SML1_NIACICatalaseOS=NialliacirculansOX=1397GN=CEQ21_22670PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	473.24267578125	2	472.798009	943.581465	-1.2129	-0.00057347	0.38829	0.00018358	-0.82464	-0.00038989	472.7980976362055	53.864	0.44817	51.05	50.727	51.175	-2.8139					10	8	2	0	0	0	0.028476	1	3653	3653		15.642	0	1	13220	+		23299	30344	19031	19054	25977	25977					0.10741753059812709
KIAFKLKRLR	10	Unmodified	_KIAFKLKRLR_					0	0	0			REV__nc|ENSG00000100099|Q9NQG7-4|HPS4	REV__nc|ENSG00000100099|Q9NQG7-4|HPS4	MULTI-SECPEP	OvCa9_classI_Rep2	2	424.9097900390625	3	424.959075	1271.8554	0.41758	0.00017745	2.9677	0.0012611	3.3852	0.0014386	425.2952870563411	64.984	0.31038	62.259	62.181	62.491	-2.7245					10	5	3	0	0	0	0.027325	1	5001	5001		11.097	0	1	13927	+		23300	17365	19032	19055	25978	25978					0.23034195889727016
KIAKRFWPYFL	11	Unmodified	_KIAKRFWPYFL_					0	0	0			REV__ENSG00000146385|ENST00000275200|TAAR8	REV__ENSG00000146385|ENST00000275200|TAAR8	MULTI-MSMS	OvCa9_classI_Rep3	3	490.2874450683594	3	490.286969	1467.83908	0.56809	0.00027853	0.28592	0.00014019	0.85401	0.00041871	490.28704031816306	67.206	1.5588	64.319	63.78	65.338	-2.8873					80	30	4	0	0	0	0.71582	1	2833	2833		24.232	4.9691	1	189160	+		23301	20013	19033	19056	25979	25979					0.12387069932992745
KIAKRFWPYFL	11	Unmodified	_KIAKRFWPYFL_					0	0	0			REV__ENSG00000146385|ENST00000275200|TAAR8	REV__ENSG00000146385|ENST00000275200|TAAR8	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	490.286969	1467.83908	1.5263	0.0007483	-1.1601	-0.0005688	0.36612	0.0001795	490.28630015453666	67.731	1.7201	64.241	63.442	65.163	-3.4902	-0.038707	-0.001562	NaN	24.232	74	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216130	+		23302	20013	19033	19056							0.12387069932992745
KIALEWVAI	9	Unmodified	_KIALEWVAI_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.2667846679688	2	521.81841	1041.62227	1.9299	0.001007	-2.435	-0.0012706	-0.5051	-0.00026357	521.8167580624892	94.915	0.38544	94.915	94.648	95.033	0					13	8	2	0	0	0	0.027462	1	10324	10324		37.159	6.8414	1	346580			23303	7829	19034	19057	25980	25980					0.10312094379423797
KIANQCMDP	9	Unmodified	_KIANQCMDP_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.7656555175781	2	510.23607	1018.45759	0.16671	8.5064E-05	-3.9219	-0.0020011	-3.7552	-0.0019161	510.2335706682515	64.916	0.47802	64.916	64.672	65.15	0					28	11	4	0	0	0	0.027462	1	5894	5894		15.642	4.1308	1	694780			23304	1407	19035	19058	25981	25981					-0.050904090943390656
KIAPKNVAN	9	Unmodified	_KIAPKNVAN_					0	0	0			REV__tr|A0A553SF28|A0A553SF28_NIACIPTSsugartransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_08130PE=4SV=1	REV__tr|A0A553SF28|A0A553SF28_NIACIPTSsugartransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_08130PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.8080749511719	2	477.790184	953.565815	1.0698	0.00051113	-1.7555	-0.00083874	-0.68568	-0.00032761	477.7891969587796	37.509	0.84721	34.616	34.343	35.19	-2.8925					27	16	2	0	0	0	0.027462	1	1412	1412		35.618	0	1	59853	+		23305	29531	19036	19059	25982	25982					0.08717466542748298
KIARGEVL	8	Unmodified	_KIARGEVL_					0	0	0			REV__tr|A0A7D6VP67|A0A7D6VP67_9CLOTDNA-directedRNApolymerasesubunitbeta'OS=ClostridiumintestinaleOX=36845GN=rpoCPE=3SV=1	REV__tr|A0A7D6VP67|A0A7D6VP67_9CLOTDNA-directedRNApolymerasesubunitbeta'OS=ClostridiumintestinaleOX=36845GN=rpoCPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	444.2510681152344	2	443.279452	884.544351	1.1805	0.0005233	-1.1396	-0.00050515	0.040944	1.815E-05	443.27910115082636	46.827	0.19896	44.117	44.043	44.242	-2.7097					5	3	2	0	0	0	0.028476	1	2812	2812		45.952	15.448	1	4982.5	+		23306	31232	19037	19060	25983	25983					0.09746081514037996
KIARSVIAP	9	Unmodified	_KIARSVIAP_					0	0	0		ENST00000463795.5_1_22:30682689-30685486:-|nuORF;ENSG00000239282|ENST00000407689|CASTOR1;ENST00000497605.6_1_22:30682689-30683547:-|nuORF;ENST00000418047.5_3_22:30682067-30689721:-|nuORF;ENST00000434987.5_3_22:30681611-30689737:-|nuORF;ENST00000447976.1_3_22:30681611-30689721:-|nuORF;ENST00000330168.9_3_22:30681611-30688778:-|nuORF;ENST00000492159.5_1_22:30683301-30685127:-|nuORF;ENST00000471480.6_1_22:30682838-30683547:-|nuORF	ENST00000463795.5_1_22:30682689-30685486:-|nuORF	ENST00000463795.5_1_22:30682689-30685486:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	477.8094787597656	2	477.808377	953.6022	-0.27418	-0.00013101	0.29007	0.0001386	0.015888	7.5916E-06	477.8083545023916	55.916	0.61983	55.916	55.641	56.261	0					32	14	3	0	0	0	0.51865	1	4610	4610		40.778	1.5253	1	929370			23307	9324	19038	19061	25984	25984					0.12354343439460536
KIAVHWNI	8	Unmodified	_KIAVHWNI_					0	0	0		tr|A0A7D6W138|A0A7D6W138_9CLOTDUF1648domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02270PE=4SV=1	tr|A0A7D6W138|A0A7D6W138_9CLOTDUF1648domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02270PE=4SV=1	tr|A0A7D6W138|A0A7D6W138_9CLOTDUF1648domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02270PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.7631530761719	2	490.787444	979.560336	-0.37342	-0.00018327	0.4378	0.00021487	0.06438	3.1597E-05	490.7872129163686	58.634	0.32037	58.634	58.572	58.892	0					9	7	2	0	0	0	0.028476	1	5026	5026		7.1934	0	1	124300			23308	35398	19039	19062	25985	25985					0.06973787750928295
KICELPKEL	9	Unmodified	_KICELPKEL_					0	0	0			REV__ENSG00000005108|ENST00000423059|THSD7A	REV__ENSG00000005108|ENST00000423059|THSD7A	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.8108520507812	2	536.807185	1071.59982	-0.85455	-0.00045873	3.8389	0.0020608	2.9844	0.001602	536.8091929671385	66.71	1.4792	63.22	62.805	64.284	-3.4902					90	29	6	0	0	0	0.46356	1	4880	4880		45.972	1.8554	1	2051100	+		23309	16392	19040	19063	25986	25986					0.0668812691947096
KICKGGKPI	9	Unmodified	_KICKGGKPI_					0	0	0		ENST00000342502.6_2_12:99028119-99038303:-|nuORF	ENST00000342502.6_2_12:99028119-99038303:-|nuORF	ENST00000342502.6_2_12:99028119-99038303:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.28338623046875	2	472.291505	942.568457	2.8074	0.0013259	-2.6887	-0.0012698	0.11874	5.6079E-05	472.2890651876844	137.32	2.1434	135.77	135.08	137.23	-1.5437					79	46	3	0	0	0	0.027462	1	13278	13278		21.96	3.6355	1	31945			23310	10581	19041	19064	25987	25987					0.09487598676059861
KICKGGKPI	9	Unmodified	_KICKGGKPI_					0	0	0		ENST00000342502.6_2_12:99028119-99038303:-|nuORF	ENST00000342502.6_2_12:99028119-99038303:-|nuORF	ENST00000342502.6_2_12:99028119-99038303:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	472.291505	942.568457	-0.38775	-0.00018313	0.19518	9.2181E-05	-0.19257	-9.0949E-05	472.29052301924554	136.03	1.1784	135.81	135.37	136.55	-0.22697	0.034959	0.0013731	NaN	21.96	50	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24532			23311	10581	19041	19064							0.09487598676059861
KICRKIIYL	9	Unmodified	_KICRKIIYL_					0	0	0		nc|ENSG00000251192|Q2M3X9-2|ZNF674;ENSG00000251192|ENST00000683375|ZNF674;nc|ENSG00000251192|Q2M3X9|ZNF674	nc|ENSG00000251192|Q2M3X9-2|ZNF674	nc|ENSG00000251192|Q2M3X9-2|ZNF674	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.3228149414062	2	575.362462	1148.71037	-0.81012	-0.00046611	4.2492	0.0024448	3.4391	0.0019787	575.3648084463522	74.337	0.86226	71.106	70.816	71.678	-3.2308					33	17	2	0	0	0	0.027462	1	5858	5858		23.042	0	1	66534			23312	9421	19042	19065	25988	25988					0.14196391698396837
KICSNAPTLPS	11	Unmodified	_KICSNAPTLPS_					0	0	0		ENST00000529359.5_1_8:38120888-38120930:-|nuORF	ENST00000529359.5_1_8:38120888-38120930:-|nuORF	ENST00000529359.5_1_8:38120888-38120930:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	565.7590942382812	2	565.797349	1129.58014	1.064	0.00060201	0.95541	0.00054057	2.0194	0.0011426	566.3011476760291	152.63	0.16141	152.63	152.55	152.71	0					9	5	3	0	0	0	0.39237	1	17871	17871		61.691	17.314	1	22578			23313	13273	19043	19066	25989	25989					0.02053750908726215
KIDDTIRYL	9	Unmodified	_KIDDTIRYL_					0	0	0		ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-MSMS	OvCa9_classI_Rep2	2	568.818603515625	2	568.819138	1135.62372	-1.0895	-0.00061973	0.26055	0.0001482	-0.82896	-0.00047153	568.8191103179437	86.008	1.1804	84.518	84.146	85.327	-1.4906					56	22	3	0	0	0	0.24899	1	7465	7465		68.846	15.909	1	435430			23314	6407	19044	19067	25990	25990					0.06133683677512636
KIDDTIRYL	9	Unmodified	_KIDDTIRYL_					0	0	0		ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-MSMS	OvCa9_classI_Rep3	3	568.8204345703125	2	568.819138	1135.62372	-1.2843	-0.00073055	0.90096	0.00051248	-0.38336	-0.00021806	568.8195300095375	86.786	1.622	84.61	83.929	85.551	-2.1768					72	31	4	0	0	0	0.056671	1	5186	5186		114.89	29.979	1	687680			23315	6407	19044	19067	25991	25991					0.06133683677512636
KIDDTIRYL	9	Unmodified	_KIDDTIRYL_					0	0	0		ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-MSMS	OvCa9_classI_Rep4_	4	568.821044921875	2	568.819138	1135.62372	-0.062922	-3.5791E-05	-0.64093	-0.00036457	-0.70385	-0.00040036	568.8186466399814	87.168	1.3023	84.541	84.201	85.503	-2.6269					68	25	4	0	0	0	0.1149	1	7401	7401		93.143	21.266	1	533150			23316	6407	19044	19067	25992	25992					0.06133683677512636
KIDEKLTSL	9	Unmodified	_KIDEKLTSL_					0	0	0			REV__tr|A0A553STX8|A0A553STX8_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05930PE=4SV=1	REV__tr|A0A553STX8|A0A553STX8_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05930PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	523.8067016601562	2	523.808239	1045.60193	0.25299	0.00013252	-1.1683	-0.00061197	-0.91532	-0.00047945	523.8075093272397	78.636	1.3663	76.896	76.512	77.878	-1.7398					66	26	4	0	0	0	0.10502	2	6577	6577;6601		95.815	5.4453	1	375220	+		23317	31022	19045	19068	25993;25994	25993					0.0809487892895504
KIDFIGVFF	9	Unmodified	_KIDFIGVFF_					0	0	0			REV__nc|ENSG00000133105|Q8WXD0-2|RXFP2	REV__nc|ENSG00000133105|Q8WXD0-2|RXFP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.3563232421875	2	543.305136	1084.59572	-1.3147	-0.00071426	1.6713	0.000908	0.3566	0.00019374	543.3061735846878	46.045	0.93483	42.973	42.824	43.759	-3.0724					22	17	2	0	0	0	0.027462	1	2476	2476		18.324	0.95945	1	126510	+		23318	19127	19046	19069	25995	25995					0.056804054881013144
KIDGLKILRKI	11	Unmodified	_KIDGLKILRKI_					0	0	0		tr|A0A7D6W1Y6|A0A7D6W1Y6_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_04465PE=4SV=1	tr|A0A7D6W1Y6|A0A7D6W1Y6_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_04465PE=4SV=1	tr|A0A7D6W1Y6|A0A7D6W1Y6_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_04465PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	432.96234130859375	3	432.962374	1295.86529	2.1789	0.00094336	-2.2987	-0.00099525	-0.11984	-5.1887E-05	432.96131184103564	61.467	0.85169	58.398	58.208	59.059	-3.0685					59	23	3	0	0	0	0.72483	1	2165	2165		17.833	0.6664	1	69266			23319	35418	19047	19070	25996	25996					0.2291933910444186
KIDGNAMPH	9	Unmodified	_KIDGNAMPH_					0	0	0			REV__SUCO|p.I1130M|1|0.59|ENSG00000094975|chr1:172609884-172609884|A/G|missense_variant	REV__SUCO|p.I1130M|1|0.59|ENSG00000094975|chr1:172609884-172609884|A/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	491.7685241699219	2	491.742376	981.4702	-0.31871	-0.00015672	-2.5146	-0.0012365	-2.8333	-0.0013932	491.7407032311094	67.701	0.14868	65.04	64.941	65.09	-2.661					4	2	2	0	0	0	0.027462	1	5297	5297		47.916	14.4	1	3468.9	+		23320	29464	19048	19071	25997	25997					-0.021276296397900296
KIDHGIPR	8	Unmodified	_KIDHGIPR_					0	0	0			REV__RNF115-GPHN|1|fusion	REV__RNF115-GPHN|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	469.22589111328125	2	468.274701	934.534849	-0.26884	-0.00012589	-1.3094	-0.00061315	-1.5782	-0.00073904	468.2744847382563	42.736	0.5611	42.736	42.453	43.014	0					19	12	3	0	0	0	0.028476	1	2791	2791		23.042	0	1	170310	+		23321	21640	19049	19072	25998	25998					0.06496313228512918
KIDHVLIV	8	Unmodified	_KIDHVLIV_					0	0	0			REV__ENSG00000112249|ENST00000369162|ASCC3	REV__ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	OvCa9_classI_Rep4_	4	468.7983703613281	2	468.797478	935.580402	0.023996	1.1249E-05	-0.11288	-5.2916E-05	-0.08888	-4.1667E-05	468.79730687464024	91.055	2.1348	88.512	88.142	90.277	-2.5425					74	41	3	0	0	0	0.62934	1	7869	7869		57.811	3.035	1	252770	+		23322	18089	19050	19073	25999	25999					0.11003538690897585
KIDIHRLY	8	Unmodified	_KIDIHRLY_					0	0	0			REV__tr|A0A553SHY0|A0A553SHY0_NIACIBileacid:sodiumsymporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_13845PE=4SV=1	REV__tr|A0A553SHY0|A0A553SHY0_NIACIBileacid:sodiumsymporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_13845PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.2783203125	2	529.311284	1056.60801	-1.3667	-0.00072343	4.2981	0.002275	2.9314	0.0015516	529.3133405508261	94.883	1.1019	92.414	92.01	93.111	-2.4685					50	21	3	0	0	0	0.028476	1	8390	8390		35.618	5.1146	1	135610	+		23323	29852	19051	19074	26000	26000					0.08197441951142537
KIDKVFTET	9	Unmodified	_KIDKVFTET_					0	0	0			REV__ENSG00000139579|ENST00000267023|NABP2	REV__ENSG00000139579|ENST00000267023|NABP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.268798828125	2	540.800414	1079.58628	0.031565	1.707E-05	-1.19	-0.00064353	-1.1584	-0.00062646	540.7995212652136	57.038	0.47582	57.038	56.788	57.264	0					16	10	3	0	0	0	0.027462	1	4777	4777		34.173	13.335	1	272050	+		23324	19619	19052	19075	26001	26001					0.049665924119153715
KIDLYNAALI	10	Unmodified	_KIDLYNAALI_					0	0	0			REV__nc|ENSG00000113558|P63208-2|SKP1	REV__nc|ENSG00000113558|P63208-2|SKP1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3294677734375	2	567.331882	1132.64921	-2.3399	-0.0013275	-1.3687	-0.0007765	-3.7086	-0.002104	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.72319	1	14775	14775		27.882	2.3082	1	241060	+		23325	18156	19053	19076	26002	26002					0.0881915819995811
KIDNIEVLE	9	Unmodified	_KIDNIEVLE_					0	0	0		tr|A0A7D6VRD8|A0A7D6VRD8_9CLOTFMN-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00480PE=4SV=1	tr|A0A7D6VRD8|A0A7D6VRD8_9CLOTFMN-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00480PE=4SV=1	tr|A0A7D6VRD8|A0A7D6VRD8_9CLOTFMN-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00480PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	536.7974243164062	2	536.797872	1071.58119	-0.77176	-0.00041428	0.30145	0.00016182	-0.47031	-0.00025246	536.7979815021174	107.12	1.3695	106.82	106.47	107.84	-0.30836					67	27	3	0	0	0	0.066102	1	10000	10000		109.48	13.288	1	594800			23326	34920	19054	19077	26003	26003					0.04826288549293167
KIDPKILAYT	10	Unmodified	_KIDPKILAYT_					0	0	0		nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	nc|ENSG00000198589|P50851-2|LRBA	nc|ENSG00000198589|P50851-2|LRBA	MULTI-MSMS	OvCa99_classI_Rep5	1	581.3477172851562	2	581.347532	1160.68051	2.6302	0.001529	-3.0732	-0.0017866	-0.44307	-0.00025757	581.3455129113248	97.768	0.98051	97.768	97.438	98.419	0					43	22	3	0	0	0	0.60504	1	10757	10757		41.427	4.9799	1	2177400			23327	8832	19055	19078	26004	26004					0.10659731234022729
KIDPRAAR	8	Unmodified	_KIDPRAAR_					0	0	0		tr|A0A7D6ZES2|A0A7D6ZES2_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12145PE=4SV=1	tr|A0A7D6ZES2|A0A7D6ZES2_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12145PE=4SV=1	tr|A0A7D6ZES2|A0A7D6ZES2_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12145PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.7456970214844	2	463.780151	925.545748	-0.30702	-0.00014239	-1.0127	-0.00046967	-1.3197	-0.00061205	463.77972298173154	42.74	0.43095	42.74	42.539	42.97	0					19	9	3	0	0	0	0.028476	1	2778	2778		3.1592	0	1	82397			23328	35487	19056	19079	26005	26005					0.07999715602795732
KIDSLALVTG	10	Unmodified	_KIDSLALVTG_					0	0	0		tr|A0A7D6VRM3|A0A7D6VRM3_9CLOTMolybdopterin-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02060PE=4SV=1	tr|A0A7D6VRM3|A0A7D6VRM3_9CLOTMolybdopterin-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02060PE=4SV=1	tr|A0A7D6VRM3|A0A7D6VRM3_9CLOTMolybdopterin-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02060PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	508.8016357421875	2	508.802957	1015.59136	-0.75072	-0.00038197	0.097557	4.9637E-05	-0.65316	-0.00033233	508.8029903488253	59.983	1.0415	57.213	56.725	57.766	-2.7702					57	19	4	0	0	0	0.26627	1	4417	4417		84.916	7.5979	1	507220			23329	34944	19057	19080	26006	26006					0.08418896274531562
KIDSWEVGDI	10	Unmodified	_KIDSWEVGDI_					0	0	0			REV__ENSG00000175115|ENST00000320580|PACS1	REV__ENSG00000175115|ENST00000320580|PACS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.85302734375	2	581.292953	1160.57135	-0.93965	-0.00054621	-3.1217	-0.0018146	-4.0613	-0.0023608	581.2910853169212	49.346	0.34314	49.346	49.164	49.507	0					17	7	3	0	0	0	0.02706	1	3682	3682		17.468	0	1	316840	+		23330	21872	19058	19081	26007	26007					-0.002508994560685096
KIDTPQQGSIQ	11	Unmodified	_KIDTPQQGSIQ_					0	0	0		ENSG00000136694|ENST00000259211|IL36A	ENSG00000136694|ENST00000259211|IL36A	ENSG00000136694|ENST00000259211|IL36A	MULTI-MSMS	OvCa9_classI_Rep2	2	405.55194091796875	3	405.550698	1213.63027	0.74305	0.00030134	3.7439	0.0015183	4.4869	0.0018197	405.5521875633834	47.39	1.9857	44.68	44.242	46.228	-2.7097					104	39	4	0	0	0	0.66539	1	2892	2892		38.714	3.5359	1	303990			23331	4502	19059	19082	26008	26008					0.031995768382330425
KIDVLNVLM	9	Unmodified	_KIDVLNVLM_					0	0	0			REV__tr|A0A7D7A3N5|A0A7D7A3N5_9CLOTHD-GYPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22320PE=4SV=1	REV__tr|A0A7D7A3N5|A0A7D7A3N5_9CLOTHD-GYPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22320PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.3087158203125	2	522.809728	1043.6049	0.38804	0.00020287	-0.20804	-0.00010876	0.18001	9.411E-05	523.3105049873645	128.96	0.64188	127.5	127.2	127.84	-1.4565					32	12	3	0	0	0	0.027462	1	12331	12331		11.511	0	1	33596	+		23332	32590	19060	19083	26009	26009					0.08484430782095842
KIDWNKIL	8	Unmodified	_KIDWNKIL_					0	0	0		ENSG00000116489|ENST00000263168|CAPZA1;ENST00000466066.1_1_1:113202257-113212751:+|nuORF;COX6A1-CAPZA1|1|fusion;ENST00000565906.2_1_15:89532752-89533049:-|nuORF;ENSG00000198898|ENST00000361183|CAPZA2;ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENSG00000116489|ENST00000263168|CAPZA1;ENSG00000198898|ENST00000361183|CAPZA2	ENSG00000198898|ENST00000361183|CAPZA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.2852783203125	2	515.30821	1028.60187	1.8959	0.00097699	3.3519	0.0017272	5.2478	0.0027042	515.3102286230379	100.42	0.3381	100.42	100.15	100.49	0					12	7	2	0	0	0	0.028476	1	11132	11132		38.806	3.6054	1	68526			23333	3181;8903	19061	19084	26010	26010					0.08870923719609891
KIEDYLVNLV	10	Unmodified	_KIEDYLVNLV_					0	0	0			REV__tr|A0A7D6VRQ5|A0A7D6VRQ5_9CLOTTypeVIIsecretionproteinEssCOS=ClostridiumintestinaleOX=36845GN=essCPE=4SV=1	REV__tr|A0A7D6VRQ5|A0A7D6VRQ5_9CLOTTypeVIIsecretionproteinEssCOS=ClostridiumintestinaleOX=36845GN=essCPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	603.2897338867188	2	603.342446	1204.67034	1.3735	0.00082871	0.48046	0.00028988	1.854	0.0011186	603.3427651814566	91.056	0.2372	91.056	90.976	91.213	0					15	5	4	0	0	0	0.026688	1	9805	9805		40.778	9.2484	1	294570	+		23334	31435	19062	19085	26011	26011					0.07619123508811754
KIEEELETL	9	Unmodified	_KIEEELETL_					0	0	0		tr|A0A553SKX2|A0A553SKX2_NIACIDNArepairproteinRecNOS=NialliacirculansOX=1397GN=recNPE=3SV=1	tr|A0A553SKX2|A0A553SKX2_NIACIDNArepairproteinRecNOS=NialliacirculansOX=1397GN=recNPE=3SV=1	tr|A0A553SKX2|A0A553SKX2_NIACIDNArepairproteinRecNOS=NialliacirculansOX=1397GN=recNPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	552.2957763671875	2	552.295162	1102.57577	1.6477	0.00091003	-1.8866	-0.001042	-0.23886	-0.00013192	552.294139399146	93.083	1.3291	93.083	92.594	93.923	0					86	31	5	0	0	0	0.1149	1	10103	10103		93.143	5.4468	1	6396100			23335	33662	19063	19086	26012	26012					0.028585649668229962
KIEEGLRRE	9	Unmodified	_KIEEGLRRE_					0	0	0			REV__ENSG00000188981|ENST00000438480|MSANTD1	REV__ENSG00000188981|ENST00000438480|MSANTD1	MULTI-MSMS	OvCa9_classI_Rep2	2	565.3198852539062	2	565.319837	1128.62512	-1.1079	-0.00062631	0.41281	0.00023337	-0.69507	-0.00039294	565.3199879177456	61.149	1.9033	58.39	57.777	59.68	-2.7593					114	36	4	0	0	0	0.59259	1	4531	4531		32.812	0	1	380010	+		23336	22751	19064	19087	26013	26013					0.06595317766300468
KIEELQQRKEA	11	Unmodified	_KIEELQQRKEA_					0	0	0		ENST00000473581.5_1_X:48834665-48847670:-|nuORF;nc|ENSG00000068400|Q4V328-2|GRIPAP1;nc|ENSG00000068400|Q4V328-4|GRIPAP1;ENSG00000068400|ENST00000376423|GRIPAP1	ENST00000473581.5_1_X:48834665-48847670:-|nuORF	ENST00000473581.5_1_X:48834665-48847670:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	457.9253234863281	3	457.924536	1370.75178	0.55592	0.00025457	-1.3948	-0.00063871	-0.83888	-0.00038414	457.92406125487963	68.365	1.1278	64.875	64.526	65.654	-3.4902					88	22	5	0	0	0	0.51772	1	5069	5069		52.167	9.9246	1	525170			23337	1392	19065	19088	26014	26014					0.08123199200736053
KIEELQQRKEA	11	Unmodified	_KIEELQQRKEA_					0	0	0		ENST00000473581.5_1_X:48834665-48847670:-|nuORF;nc|ENSG00000068400|Q4V328-2|GRIPAP1;nc|ENSG00000068400|Q4V328-4|GRIPAP1;ENSG00000068400|ENST00000376423|GRIPAP1	ENST00000473581.5_1_X:48834665-48847670:-|nuORF	ENST00000473581.5_1_X:48834665-48847670:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	457.924536	1370.75178	-0.06157	-2.8195E-05	-0.23117	-0.00010586	-0.29274	-0.00013405	457.9243821818839	67.564	1.1845	64.903	64.446	65.631	-2.661	0.014126	0.00026784	NaN	52.167	88	23	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262610			23338	1392	19065	19088							0.08123199200736053
KIEEPPIPP	9	Unmodified	_KIEEPPIPP_					0	0	0		UBE2O|p.E1121Rfs*4|1|0.12|ENSG00000175931|chr17:76391461-76391462|-/G|frameshift_variant;ENSG00000175931|ENST00000319380|UBE2O	UBE2O|p.E1121Rfs*4|1|0.12|ENSG00000175931|chr17:76391461-76391462|-/G|frameshift_variant	UBE2O|p.E1121Rfs*4|1|0.12|ENSG00000175931|chr17:76391461-76391462|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	509.8038330078125	2	510.292225	1018.5699	-0.19379	-9.8889E-05	-4.3745	-0.0022323	-4.5683	-0.0023312	510.29108337003	135.08	0.24347	134.86	134.74	134.98	-0.22696					7	4	2	0	0	0	0.027462	1	13387	13387		30.504	0	1	7315			23339	7572	19066	19089	26015	26015					0.061355112458159056
KIEETKVKLN	10	Unmodified	_KIEETKVKLN_					0	0	0			REV__ENSG00000183323|ENST00000396496|CCDC125	REV__ENSG00000183323|ENST00000396496|CCDC125	MULTI-SECPEP	OvCa9_classI_Rep2	2	400.2468566894531	3	401.243206	1200.70779	0.78629	0.00031549	1.0113	0.00040576	1.7975	0.00072125	401.2437593461999	56.171	0.94143	53.367	53.175	54.117	-2.804					52	18	4	0	0	0	0.027021	1	3952	3952		3.6191	2.2003	1	96846	+		23340	22356	19067	19090	26016	26016					0.1154621477442106
KIEGLLEIS	9	Unmodified	_KIEGLLEIS_					0	0	0			REV__tr|A0A7D6VPK5|A0A7D6VPK5_9CLOTThiamine-phosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=thiEPE=3SV=1	REV__tr|A0A7D6VPK5|A0A7D6VPK5_9CLOTThiamine-phosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=thiEPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	502.2862243652344	2	501.297507	1000.58046	-1.0136	-0.00050813	2.4801	0.0012433	1.4665	0.00073516	501.80148793253636	83.683	0.96681	82.084	81.778	82.744	-1.5988					23	14	2	0	0	0	0.027462	1	7236	7236		42.396	18.193	1	30378	+		23341	31255	19068	19091	26017	26017					0.08019493900224006
KIEGLLEIS	9	Unmodified	_KIEGLLEIS_					0	0	0			REV__tr|A0A7D6VPK5|A0A7D6VPK5_9CLOTThiamine-phosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=thiEPE=3SV=1	REV__tr|A0A7D6VPK5|A0A7D6VPK5_9CLOTThiamine-phosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=thiEPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	501.297507	1000.58046	0.78248	0.00039226	0.3466	0.00017375	1.1291	0.000566	501.29697760988495	84.954	0.48854	82.307	82.072	82.561	-2.6463	0.063598	-0.0014658	NaN	34.173	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27867	+		23342	31255	19068	19091							0.08019493900224006
KIEIEDEKIG	10	Unmodified	_KIEIEDEKIG_					0	0	0			REV__tr|A0A553SSQ2|A0A553SSQ2_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_03500PE=4SV=1	REV__tr|A0A553SSQ2|A0A553SSQ2_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_03500PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.3515625	2	587.321711	1172.62887	-0.66047	-0.00038791	3.8925	0.0022862	3.232	0.0018982	587.3242810126765	39.398	0.17305	39.398	39.332	39.505	0					6	3	2	0	0	0	0.026931	1	2317	2317		37.812	9.73	1	171070	+		23343	30862	19069	19092	26018	26018					0.049459427494639385
KIEIKLKKP	9	Unmodified	_KIEIKLKKP_					0	0	0		ENSG00000165416|ENST00000310528|SUGT1;nc|ENSG00000165416|Q9Y2Z0|SUGT1	ENSG00000165416|ENST00000310528|SUGT1	ENSG00000165416|ENST00000310528|SUGT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.830810546875	2	548.876259	1095.73797	2.2339	0.0012262	-0.75566	-0.00041476	1.4783	0.00081139	548.8757072033671	80.232	0.45509	80.232	80.074	80.529	0					15	10	2	0	0	0	0.027247	1	8201	8201		79.713	7.8351	1	184660			23344	6560	19070	19093	26019	26019					0.19392618230267544
KIEINGVKTT	10	Unmodified	_KIEINGVKTT_					0	0	0			REV__ACTR2|p.L303Gfs*32|1|0.04|ENSG00000138071|chr2:65265066-65265067|-/TGGAGTGCAGTGGTGCAGTCTCG|frameshift_variant	REV__ACTR2|p.L303Gfs*32|1|0.04|ENSG00000138071|chr2:65265066-65265067|-/TGGAGTGCAGTGGTGCAGTCTCG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.8313598632812	2	551.826963	1101.63937	0.66152	0.00036504	3.9645	0.0021877	4.626	0.0025528	551.8291885360787	32.876	1.2809	30.18	29.716	30.997	-2.6954					54	26	3	0	0	0	0.72142	1	825	825		28.081	0.19925	1	118130	+		23345	15561	19071	19094	26020	26020					0.09261970194552305
KIEKNLFEL	9	Unmodified	_KIEKNLFEL_					0	0	0		tr|A0A7D6VU43|A0A7D6VU43_9CLOTSpo0Efamilysporulationregulatoryprotein-asparticacidphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_19025PE=4SV=1	tr|A0A7D6VU43|A0A7D6VU43_9CLOTSpo0Efamilysporulationregulatoryprotein-asparticacidphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_19025PE=4SV=1	tr|A0A7D6VU43|A0A7D6VU43_9CLOTSpo0Efamilysporulationregulatoryprotein-asparticacidphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_19025PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3292846679688	2	567.331882	1132.64921	-2.3399	-0.0013275	-1.3687	-0.0007765	-3.7086	-0.002104	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.69123	1	14692	14692		20.947	1.8434	1	241060			23346	35162	19072	19095	26021	26021					0.0881915819995811
KIELNRKL	8	Unmodified	_KIELNRKL_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	OvCa99_classI_Rep5	1	507.3287048339844	2	507.326934	1012.63931	-0.10917	-5.5387E-05	-0.81293	-0.00041242	-0.9221	-0.00046781	507.3265352357464	65.169	2.8481	65.169	64.834	67.683	0					146	71	5	0	0	0	0.24597	1	5974	5974		116.9	2.3178	1	40796000			23347	2975	19073	19096	26022	26022					0.1335001498522388
KIELNRKL	8	Unmodified	_KIELNRKL_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MATCH	OvCa9_classI_Rep2	2		2	507.326934	1012.63931	-1.2903	-0.00065461	0.088511	4.4904E-05	-1.2018	-0.00060971	507.3269473688316	67.677	1.5823	65.016	64.793	66.375	-2.661	-0.10171	0.00074468	NaN	116.9	43	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106580			23348	2975	19073	19096							0.1335001498522388
KIELNRKL	8	Unmodified	_KIELNRKL_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	507.326934	1012.63931	-0.20526	-0.00010413	-0.81905	-0.00041553	-1.0243	-0.00051966	507.3263861160896	68.658	1.3718	65.168	64.916	66.288	-3.4902	0.049962	-0.00017618	NaN	116.9	43	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104760			23349	2975	19073	19096							0.1335001498522388
KIEMFEFNPEK	11	Unmodified	_KIEMFEFNPEK_					0	0	0		tr|A0A7D6ZJY7|A0A7D6ZJY7_9CLOTthiaminediphosphokinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10440PE=4SV=1	tr|A0A7D6ZJY7|A0A7D6ZJY7_9CLOTthiaminediphosphokinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10440PE=4SV=1	tr|A0A7D6ZJY7|A0A7D6ZJY7_9CLOTthiaminediphosphokinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10440PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.296142578125	3	471.235722	1410.68534	0.54544	0.00025703	-1.9228	-0.00090607	-1.3773	-0.00064904	471.2348188278843	21.735	0.3038	20.396	20.27	20.574	-1.3386					8	5	2	0	0	0	0.026174	1	216	216		17.167	4.7339	1	15289			23350	35653	19074	19097	26023	26023					-0.003577526855224278
KIENIDIRV	9	Unmodified	_KIENIDIRV_					0	0	0		tr|A0A7D6VUC1|A0A7D6VUC1_9CLOTGyrI-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06645PE=4SV=1	tr|A0A7D6VUC1|A0A7D6VUC1_9CLOTGyrI-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06645PE=4SV=1	tr|A0A7D6VUC1|A0A7D6VUC1_9CLOTGyrI-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06645PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.2901611328125	2	550.327131	1098.63971	-0.23365	-0.00012859	-1.2721	-0.00070006	-1.5057	-0.00082865	550.3266954510385	69.194	0.41243	69.194	68.977	69.39	0					15	9	2	0	0	0	0.027447	1	6552	6552		47.657	5.2612	1	365950			23351	35178	19075	19098	26024	26024					0.09433389914420331
KIEPIRRKGN	10	Unmodified	_KIEPIRRKGN_					0	0	0		ENSG00000158158|ENST00000377075|CNNM4	ENSG00000158158|ENST00000377075|CNNM4	ENSG00000158158|ENST00000377075|CNNM4	MULTI-MSMS	OvCa9_classI_Rep3	3	605.8719482421875	2	605.872571	1209.73059	-4.4328	-0.0026857	3.4628	0.002098	-0.96995	-0.00058766	605.8745511795182	157.17	1.2501	156	155.65	156.91	-1.1707					83	31	4	0	0	0	0.73378	1	13539	13539		26.693	5.0072	1	204530			23352	5935	19076	19099	26025	26025					0.13411278682542616
KIEPKEVAPQ	10	Unmodified	_KIEPKEVAPQ_					0	0	0			REV__ENSG00000095203|ENST00000374566|EPB41L4B	REV__ENSG00000095203|ENST00000374566|EPB41L4B	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.7931518554688	2	569.826963	1137.63937	2.1773	0.0012407	0.53054	0.00030231	2.7079	0.001543	569.8273188318691	84.015	0.41924	84.015	83.801	84.22	0					16	9	2	0	0	0	0.027001	1	8753	8753		21.686	0	1	543390	+		23353	17283	19077	19100	26026	26026					0.07605970194549627
KIEQAERAK	9	Unmodified	_KIEQAERAK_					0	0	0		ENSG00000163885|ENST00000352312|CFAP100;nc|ENSG00000163885|Q494V2-2|CFAP100	ENSG00000163885|ENST00000352312|CFAP100	ENSG00000163885|ENST00000352312|CFAP100	MULTI-MSMS	OvCa9_classI_Rep2	2	536.8084716796875	2	536.809105	1071.60366	1.1636	0.00062461	-1.3402	-0.00071942	-0.17662	-9.4811E-05	536.8082688314144	28.128	1.0203	25.418	25.196	26.216	-2.7097					46	21	3	0	0	0	0.16264	2	548	548;572		82.75	5.1589	1	235380			23354	6374	19078	19101	26027;26028	26027					0.0707193273754001
KIEQLQIQM	9	Unmodified	_KIEQLQIQM_					0	0	0		ENSG00000099338|ENST00000409235|CATSPERG	ENSG00000099338|ENST00000409235|CATSPERG	ENSG00000099338|ENST00000409235|CATSPERG	MULTI-MSMS	OvCa9_classI_Rep3	3	565.811767578125	2	565.815541	1129.61653	-0.45503	-0.00025746	-2.7809	-0.0015735	-3.2359	-0.0018309	565.8138361081482	73.998	1.4248	71.511	71.225	72.65	-2.4873					64	28	3	0	0	0	0.28934	1	3651	3651		64.207	14.766	1	458810			23355	1969	19079	19102	26029	26029					0.05690627805438453
KIEQNRKRE	9	Unmodified	_KIEQNRKRE_					0	0	0		nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.22247314453125	3	400.898432	1199.67347	3.4208	0.0013714	2.2593	0.00090573	5.6801	0.0022771	401.23383607718284	87.236	0.32627	87.236	86.931	87.257	0					10	7	2	0	0	0	0.02745	1	9230	9230		53.089	8.4495	1	144910			23356	14857	19080	19103	26030	26030					0.0816181140619392
KIERAIGL	8	Unmodified	_KIERAIGL_					0	0	0		ENSG00000107223|ENST00000224073|EDF1	ENSG00000107223|ENST00000224073|EDF1	ENSG00000107223|ENST00000224073|EDF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	451.25537109375	2	450.287277	898.560001	-1.0074	-0.00045361	0.57408	0.0002585	-0.43331	-0.00019511	450.28738768660395	64.071	0.31831	64.071	63.935	64.253	0					13	7	3	0	0	0	0.028476	1	5815	5815		44.117	13.613	1	244390			23357	2597	19081	19104	26031	26031					0.10666368031081674
KIEVKKCLV	9	Unmodified	_KIEVKKCLV_					0	0	0			REV__ENST00000456643.5_2_9:75766783-75769137:+|nuORF	REV__ENST00000456643.5_2_9:75766783-75769137:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2933349609375	2	530.33337	1058.65219	0.26923	0.00014278	2.1514	0.0011409	2.4206	0.0012837	530.3334986821867	46.161	0.26063	46.161	46.024	46.284	0					7	5	2	0	0	0	0.027462	1	3229	3229		23.523	13.817	1	59234	+		23358	23899	19082	19105	26032	26032					0.12520710053104267
KIFAIEGTE	9	Unmodified	_KIFAIEGTE_					0	0	0		ENST00000571644.1_1_16:31372467-31381400:+|nuORF;ITGAX|p.N385Kfs*123|1|0.09|ENSG00000140678|chr16:31362133-31362134|-/C|frameshift_variant;ENSG00000140678|ENST00000268296|ITGAX	ENST00000571644.1_1_16:31372467-31381400:+|nuORF	ENST00000571644.1_1_16:31372467-31381400:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	504.27752685546875	2	504.274032	1006.53351	2.1946	0.0011067	2.2494	0.0011343	4.444	0.002241	504.27503060265195	84.069	0.87531	84.069	83.714	84.589	0					62	20	5	0	0	0	0.42676	1	8748	8748		49.442	5.3247	1	4643900			23359	4867	19083	19106	26033	26033					0.030506343490742438
KIFALAFVKL	10	Unmodified	_KIFALAFVKL_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1;DOCK1-NPS|1|fusion	nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	MULTI-SECPEP	OvCa9_classI_Rep2	2	575.3090209960938	2	575.373352	1148.73215	-1.0444	-0.00060092	1.7596	0.0010124	0.71515	0.00041148	575.8749213053824	98.23	0.1937	97.337	97.216	97.41	-0.89305					5	3	2	0	0	0	0.026752	1	8914	8914		44.117	16.235	1	12860			23360	5517	19084	19107	26034	26034					0.16373519718604257
KIFDIKYEI	9	Unmodified	_KIFDIKYEI_					0	0	0			REV__tr|A0A7D6VXI7|A0A7D6VXI7_9CLOTDNAalkylationrepairproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08845PE=4SV=1	REV__tr|A0A7D6VXI7|A0A7D6VXI7_9CLOTDNAalkylationrepairproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08845PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.833984375	2	584.834257	1167.65396	-0.062285	-3.6426E-05	-0.25124	-0.00014693	-0.31352	-0.00018336	584.8339486728624	111.14	1.9383	109.54	109.07	111.01	-1.6011					92	34	4	0	0	0	0.1574	1	10238	10238		83.647	2.122	1	334470	+		23361	31779	19085	19108	26035	26035					0.07684042342702924
KIFDSFAKL	9	Unmodified	_KIFDSFAKL_					0	0	0		ENST00000494490.1_3_15:57999305-58006874:+|nuORF;nc|ENSG00000255529|P0CAP2-3|POLR2M;ENSG00000255529|ENST00000299638|POLR2M	ENST00000494490.1_3_15:57999305-58006874:+|nuORF	ENST00000494490.1_3_15:57999305-58006874:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.2576293945312	2	534.808042	1067.60153	-0.55873	-0.00029881	2.4076	0.0012876	1.8489	0.00098881	534.8097047213283	61.403	0.62608	61.403	61.2	61.826	0					33	14	4	0	0	0	0.027411	1	5434	5434		67.494	10.773	1	2061500			23362	9457	19086	19109	26036	26036					0.07043503999739187
KIFDVRNGGQI	11	Unmodified	_KIFDVRNGGQI_					0	0	0		ENST00000477547.6_1_3:10345637-10359739:-|nuORF;nc|ENSG00000157020|P55735-2|SEC13;ENSG00000157020|ENST00000350697|SEC13;nc|ENSG00000157020|P55735-4|SEC13;nc|ENSG00000157020|P55735-3|SEC13;ENST00000397105.7_1_3:10353516-10362775:-|nuORF;ENST00000397102.5_1_3:10355120-10362775:-|nuORF;ENST00000397099.1_1_3:10357003-10360966:-|nuORF	ENST00000477547.6_1_3:10345637-10359739:-|nuORF	ENST00000477547.6_1_3:10345637-10359739:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	416.2337951660156	3	416.234933	1245.68297	0.47776	0.00019886	-0.56755	-0.00023623	-0.089787	-3.7372E-05	416.234583349699	78.17	1.5263	76.43	75.881	77.408	-1.7398					82	29	4	0	0	0	0.52474	1	6522	6522		51.528	0	1	445250			23363	5870	19087	19110	26037	26037					0.0699557969169291
KIFKHISKK	9	Unmodified	_KIFKHISKK_					0	0	0		ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.8668823242188	2	564.866226	1127.7179	1.7897	0.001011	-2.1503	-0.0012146	-0.36055	-0.00020366	564.8649170320913	32.751	0.9951	30.056	29.853	30.848	-2.6954					41	19	3	0	0	0	0.48047	1	819	819		44.377	17.684	1	53179			23364	1783	19088	19111	26038	26038					0.15914867290302936
KIFKHISKK	9	Unmodified	_KIFKHISKK_					0	0	0		ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MULTI-MATCH	OvCa9_classI_Rep2	2		2	564.866226	1127.7179	-0.69918	-0.00039495	0.3532	0.00019951	-0.34598	-0.00019544	564.8662238005985	33.086	0.74877	30.376	30.124	30.873	-2.7097	0.16028	0.0020103	NaN	44.377	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25094			23365	1783	19088	19111							0.15914867290302936
KIFKKPLKK	9	Unmodified	_KIFKKPLKK_					0	0	0		ENSG00000167323|ENST00000526596|STIM1;nc|ENSG00000167323|Q13586|STIM1;ENST00000526156.1_1_11:4107651-4113025:+|nuORF	ENSG00000167323|ENST00000526596|STIM1	ENSG00000167323|ENST00000526596|STIM1	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.3953857421875	2	565.394619	1128.77469	1.794	0.0010143	-2.0217	-0.0011431	-0.22775	-0.00012877	565.3932909276965	34.314	1.2515	31.526	31.2	32.451	-2.7881					66	24	4	0	0	0	0.51865	1	988	988		40.778	7.9657	1	178170			23366	6780	19089	19112	26039	26039					0.2154491484684513
KIFLYKQV	8	Unmodified	_KIFLYKQV_					0	0	0		ENST00000480136.1_1_1:171303670-171311201:+|nuORF;ENSG00000076258|ENST00000367749|FMO4	ENST00000480136.1_1_1:171303670-171311201:+|nuORF	ENST00000480136.1_1_1:171303670-171311201:+|nuORF	MSMS	OvCa99_classI_Rep5	1	519.8206787109375	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.51	1	138.51	138.01	139.01	0								0	0	0	0.30129	1	16164	16164		42.474	1.9018	1				23367	1553	19090	19113	26040	26040					0.11004398242016578
KIFNSDELI	9	Unmodified	_KIFNSDELI_					0	0	0		MDN1|p.E3571Vfs*18|1|0.11|ENSG00000112159|chr6:89690710-89690711|-/AGGGAAGGAGAGTCACTTA|frameshift_variant;MDN1|p.N5282Ifs*9|1|0.04|ENSG00000112159|chr6:89652262-89652263|-/GATTTTTCTGCCAACTA|frameshift_variant;MDN1|p.I5359Kfs*8|1|0.1|ENSG00000112159|chr6:89650154-89650155|-/CATAGCT|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1	MDN1|p.E3571Vfs*18|1|0.11|ENSG00000112159|chr6:89690710-89690711|-/AGGGAAGGAGAGTCACTTA|frameshift_variant	MDN1|p.E3571Vfs*18|1|0.11|ENSG00000112159|chr6:89690710-89690711|-/AGGGAAGGAGAGTCACTTA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	539.7935791015625	2	539.792589	1077.57063	-0.25527	-0.00013779	0.16194	8.7414E-05	-0.093333	-5.038E-05	539.7923318698668	128.33	2.6512	126.89	126.5	129.15	-1.4366					136	52	4	0	0	0	0.26076	1	12319	12319		67.494	2.0283	1	201700			23368	2882	19091	19114	26041	26041					0.03494305894855643
KIFPYVLLRWV	11	Unmodified	_KIFPYVLLRWV_					0	0	0			REV__tr|A0A553SM77|A0A553SM77_NIACIVanZfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_22030PE=4SV=1	REV__tr|A0A553SM77|A0A553SM77_NIACIVanZfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_22030PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	478.2919921875	3	478.627102	1432.85948	1.8814	0.00090049	-2.2649	-0.0010841	-0.38353	-0.00018357	478.62596618488055	63.983	1.0452	60.989	60.651	61.696	-2.9933					32	20	2	0	0	0	0.026174	1	2437	2437		28.577	5.1988	1	55350	+		23369	30303	19092	19115	26042	26042					0.16036240592779905
KIFSGLLKV	9	Unmodified	_KIFSGLLKV_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;ENST00000481626.5_1_3:52553496-52554202:+|nuORF	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MSMS	OvCa99_classI_Rep5	1	502.8296813964844	2	502.828778	1003.643	1.3852	0.00069652	0.58316	0.00029323	1.9684	0.00098976	502.82893180421246	93.541	1.9822	93.541	93.221	95.204	0					93	45	4	0	0	0	0.020196	3	10162	10134;10162;10195		146.79	52.779	1	14933000			23370	945	19093	19116	26043;26044;26045	26044					0.14132684759090353
KIFSGLLKV	9	Unmodified	_KIFSGLLKV_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;ENST00000481626.5_1_3:52553496-52554202:+|nuORF	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MSMS	OvCa9_classI_Rep2	2	502.82818603515625	2	502.828778	1003.643	-0.59297	-0.00029816	0.058601	2.9466E-05	-0.53437	-0.0002687	502.82872794883195	97.43	2.3707	96.471	96.118	98.489	-0.95857					114	47	4	0	0	0	0.066102	4	8825	8814;8819;8825;8839		109.48	24.738	1	607580			23371	945	19093	19116	26046;26047;26048;26049	26048					0.14132684759090353
KIFSGLLKV	9	Unmodified	_KIFSGLLKV_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;ENST00000481626.5_1_3:52553496-52554202:+|nuORF	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MSMS	OvCa9_classI_Rep3	3	502.8280334472656	2	502.828778	1003.643	-0.60459	-0.00030401	0.2748	0.00013818	-0.3298	-0.00016583	502.82887241526265	98.981	3.0929	97.296	96.904	99.997	-1.685					117	60	4	0	0	0	0.043101	4	6630	6630;6636;6648;6654		124.08	19.131	1	708720			23372	945	19093	19116	26050;26051;26052;26053	26050					0.14132684759090353
KIFSGLLKV	9	Unmodified	_KIFSGLLKV_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;ENST00000481626.5_1_3:52553496-52554202:+|nuORF	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.82891845703125	2	502.828778	1003.643	-1.2615	-0.00063431	1.1585	0.00058252	-0.103	-5.1791E-05	502.8292319007129	99.566	1.7943	97.241	96.847	98.641	-2.3253					88	34	4	0	0	0	0.036986	4	8871	8871;8883;8896;8909		129.42	23.006	1	594080			23373	945	19093	19116	26054;26055;26056;26057	26054					0.14132684759090353
KIFSGVFVK	9	Unmodified	_KIFSGVFVK_					0	0	0		ENST00000397415.7_1_6:42848808-42854199:+|nuORF;ENSG00000146223|ENST00000493763|RPL7L1;ENST00000530523.1_1_8:42580956-42581139:-|nuORF;nc|ENSG00000146223|Q6DKI1-2|RPL7L1;ENST00000462348.1_1_6:42848614-42854030:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	512.8129272460938	2	512.813128	1023.6117	0.47974	0.00024602	-0.22125	-0.00011346	0.25849	0.00013256	512.8126145290439	81.852	1.5417	80.203	79.869	81.41	-1.6485					89	29	4	0	0	0	0.07097	4	6961	6955;6961;6972;6979		106.68	34.806	1	735670			23374	5274	19094	19117	26058;26059;26060;26061	26059					0.10084111724995637
KIFSGVFVK	9	Unmodified	_KIFSGVFVK_					0	0	0		ENST00000397415.7_1_6:42848808-42854199:+|nuORF;ENSG00000146223|ENST00000493763|RPL7L1;ENST00000530523.1_1_8:42580956-42581139:-|nuORF;nc|ENSG00000146223|Q6DKI1-2|RPL7L1;ENST00000462348.1_1_6:42848614-42854030:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	512.8141479492188	2	512.813128	1023.6117	-0.76358	-0.00039157	0.26086	0.00013377	-0.50272	-0.0002578	512.8131311282475	82.803	2.8209	80.507	80.089	82.91	-2.2963					111	58	4	0	0	0	0.043101	1	4682	4682		124.08	46.763	1	1038400			23375	5274	19094	19117	26062	26062					0.10084111724995637
KIFSGVFVK	9	Unmodified	_KIFSGVFVK_					0	0	0		ENST00000397415.7_1_6:42848808-42854199:+|nuORF;ENSG00000146223|ENST00000493763|RPL7L1;ENST00000530523.1_1_8:42580956-42581139:-|nuORF;nc|ENSG00000146223|Q6DKI1-2|RPL7L1;ENST00000462348.1_1_6:42848614-42854030:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.8145141601562	2	512.813128	1023.6117	-0.33904	-0.00017387	0.39427	0.00020219	0.055223	2.8319E-05	512.812948726958	83.11	2.0542	80.427	80.076	82.13	-2.683					95	42	3	0	0	0	0.14445	3	6885	6885;6897;6910		85.862	25.744	1	767240			23376	5274	19094	19117	26063;26064;26065	26063					0.10084111724995637
KIFWRIVL	8	Unmodified	_KIFWRIVL_					0	0	0		tr|A0A553SGQ1|A0A553SGQ1_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_11240PE=3SV=1	tr|A0A553SGQ1|A0A553SGQ1_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_11240PE=3SV=1	tr|A0A553SGQ1|A0A553SGQ1_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_11240PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	537.8438720703125	2	537.844762	1073.67497	-0.45495	-0.00024469	-3.7505	-0.0020172	-4.2054	-0.0022619	537.8426240498422	54.957	0.96178	54.957	54.761	55.723	0					51	22	4	0	0	0	0.52992	1	4462	4462		74.517	5.7298	1	5216600			23377	33180	19095	19118	26066	26066					0.14108097232860928
KIGDSKYIKV	10	Unmodified	_KIGDSKYIKV_					0	0	0			REV__ENSG00000005022|ENST00000317881|SLC25A5	REV__ENSG00000005022|ENST00000317881|SLC25A5	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8426513671875	2	575.845156	1149.67576	-4.018	-0.0023138	0.54994	0.00031668	-3.4681	-0.0019971	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.74374	1	12329	12329		25.574	1.0549	1	445630	+		23378	16389	19096	19119	26067	26067					0.10690847091268552
KIGFATPVDL	10	Unmodified	_KIGFATPVDL_					0	0	0			REV__ENST00000534247.1_1_8:123875672-123963584:+|nuORF	REV__ENST00000534247.1_1_8:123875672-123963584:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.8011474609375	2	530.8055	1059.59645	1.7676	0.00093824	3.2338	0.0017165	5.0014	0.0026548	530.8074179178168	93.138	0.62303	93.138	92.803	93.426	0					21	14	2	0	0	0	0.026679	1	10078	10078		62.107	5.3864	1	588840	+		23379	24381	19097	19120	26068	26068					0.06903200137116983
KIGKFPFY	8	Unmodified	_KIGKFPFY_					0	0	0			REV__ENST00000389484.7_1_2:142888702-142888849:-|nuORF	REV__ENST00000389484.7_1_2:142888702-142888849:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.7511901855469	2	500.286746	998.558939	-1.3112	-0.00065596	3.328	0.0016649	2.0168	0.001009	500.288754927166	42.107	0.55667	39.126	38.853	39.41	-2.9804					17	10	2	0	0	0	0.028476	1	1919	1919		18.324	5.3652	1	28626	+		23380	25227	19098	19121	26069	26069					0.059601536621812556
KIGKFPFY	8	Unmodified	_KIGKFPFY_					0	0	0			REV__ENST00000389484.7_1_2:142888702-142888849:-|nuORF	REV__ENST00000389484.7_1_2:142888702-142888849:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	500.286746	998.558939	0.6577	0.00032904	1.3916	0.00069621	2.0493	0.0010252	500.28796432200664	41.96	0.29531	39.25	38.98	39.275	-2.7097	0.062059	-0.001042	NaN	24.203	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11464	+		23381	25227	19098	19121							0.059601536621812556
KIGLLEAAA	9	Unmodified	_KIGLLEAAA_					0	0	0			REV__tr|A0A553SL86|A0A553SL86_NIACIBacillithiolbiosynthesisdeacetylaseBshB1OS=NialliacirculansOX=1397GN=bshB1PE=4SV=1	REV__tr|A0A553SL86|A0A553SL86_NIACIBacillithiolbiosynthesisdeacetylaseBshB1OS=NialliacirculansOX=1397GN=bshB1PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	443.27227783203125	2	443.273835	884.533118	0.83529	0.00037026	-3.8589	-0.0017105	-3.0236	-0.0013403	443.27205335230417	138.39	1.523	138.16	137.68	139.21	-0.22696					79	30	3	0	0	0	0.70177	1	13812	13812		17.365	0.89182	1	138730	+		23382	30199	19099	19122	26070	26070					0.08623259419880469
KIGLLQAML	9	Unmodified	_KIGLLQAML_					0	0	0			REV__tr|A0A553SSQ8|A0A553SSQ8_NIACIM20/M25/M40familymetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_03525PE=4SV=1	REV__tr|A0A553SSQ8|A0A553SSQ8_NIACIM20/M25/M40familymetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_03525PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.80859375	2	493.806988	985.599423	0.11226	5.5436E-05	3.6107	0.001783	3.7229	0.0018384	493.80859966102537	22.845	0.9819	21.451	20.923	21.905	-1.3935					59	28	3	0	0	0	0.6653	1	352	352		24.203	3.7209	1	52229	+		23383	30866	19100	19123	26071	26071					0.10604751990285877
KIGNAENNID	10	Unmodified	_KIGNAENNID_					0	0	0			REV__ENST00000396696.1_1_8:61504408-61533325:+|nuORF	REV__ENST00000396696.1_1_8:61504408-61533325:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.7936401367188	2	544.272552	1086.53055	2.6023	0.0014164	-1.6606	-0.00090379	0.94173	0.00051256	544.7708876126649	100.73	0.37029	100.73	100.57	100.94	0					13	8	2	0	0	0	0.026734	1	11183	11183		31.53	4.4825	1	225350	+		23384	17664	19101	19124	26072	26072					-0.009252407757230685
KIGNKEACKV	10	Unmodified	_KIGNKEACKV_					0	0	0		nc|ENSG00000083937|Q9UQN3-2|CHMP2B;ENSG00000083937|ENST00000263780|CHMP2B	nc|ENSG00000083937|Q9UQN3-2|CHMP2B	nc|ENSG00000083937|Q9UQN3-2|CHMP2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2786254882812	2	545.307884	1088.60121	1.1838	0.00064556	2.0517	0.0011188	3.2356	0.0017644	545.3084414195044	79.092	0.9946	79.092	78.709	79.704	0					28	20	3	0	0	0	0.027118	1	8137	8137		19.104	0	1	755070			23385	1707	19102	19125	26073	26073					0.06045761008226691
KIGPSCLWH	9	Unmodified	_KIGPSCLWH_					0	0	0			REV__ENST00000560541.5_1_7:101556607-101926379:+|nuORF	REV__ENST00000560541.5_1_7:101556607-101926379:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.8369750976562	2	520.770937	1039.52732	-0.15385	-8.0118E-05	2.1456	0.0011174	1.9917	0.0010372	520.771997248623	115.24	0.69086	115.12	114.9	115.59	-0.11777					20	13	2	0	0	0	0.027462	1	10987	10987		19.36	10.538	1	23617	+		23386	27621	19103	19126	26074	26074					0.009138376365626755
KIGQHNNML	9	Unmodified	_KIGQHNNML_					0	0	0			REV__nc|ENSG00000115306|Q01082-3|SPTBN1	REV__nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.8182983398438	2	527.776751	1053.53895	2.092	0.0011041	-1.9739	-0.0010418	0.11809	6.2326E-05	527.7745755090203	101.15	0.87997	101.15	100.77	101.65	0					23	15	2	0	0	0	0.027417	1	11194	11194		45.952	0	1	407130	+		23387	18234	19104	19127	26075	26075					0.014320346599106415
KIGRKKAR	8	Unmodified	_KIGRKKAR_					0	0	0			REV__tr|A0A7D7A436|A0A7D7A436_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00080PE=4SV=1	REV__tr|A0A7D7A436|A0A7D7A436_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00080PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.7803955078125	2	478.827435	955.640317	0.10852	5.1963E-05	-2.1362	-0.0010228	-2.0276	-0.00097089	478.8275650249803	75.028	0.18922	71.797	71.678	71.867	-3.2308					5	3	2	0	0	0	0.028476	1	5893	5893		33.516	3.674	1	16719	+		23388	32600	19105	19128	26076	26076					0.16072274144789844
KIHARLDV	8	Unmodified	_KIHARLDV_					0	0	0			REV__ENST00000520580.5_1_5:65460613-65466462:+|nuORF	REV__ENST00000520580.5_1_5:65460613-65466462:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	476.7820129394531	2	476.290351	950.566149	0.39844	0.00018977	-0.27584	-0.00013138	0.12259	5.839E-05	476.2900087938237	43.443	0.49542	40.733	40.559	41.054	-2.7097					11	9	2	0	0	0	0.028476	1	2387	2387		24.203	5.8783	1	24593	+		23389	27056	19106	19129	26077	26077					0.08888886262616325
KIHDLETEL	9	Unmodified	_KIHDLETEL_					0	0	0		nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;CDK5RAP2|p.Y1498Gfs*4|1|0.29|ENSG00000136861|chr9:120409227-120409240|TCACGCTGGCATAC/-|frameshift_variant;ENST00000483412.5_1_9:123170580-123298708:-|nuORF	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.2930908203125	2	549.295496	1096.57644	-0.91497	-0.00050259	-3.9099	-0.0021477	-4.8249	-0.0026503	549.2933202730868	59.505	0.65321	59.505	59.265	59.918	0					24	16	2	0	0	0	0.027462	1	5124	5124		27.882	0	1	832600			23390	4524	19107	19130	26078	26078					0.03201404406536312
KIHEVREHLQ	10	Unmodified	_KIHEVREHLQ_					0	0	0			REV__nc|ENSG00000131844|Q9HCC0-2|MCCC2	REV__nc|ENSG00000131844|Q9HCC0-2|MCCC2	MSMS	OvCa99_classI_Rep5	1	430.24127197265625	3	430.242199	1287.70477	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.168	1	37.168	36.668	37.668	0								0	0	0	0.12657	1	2017	2017		58.246	0	1		+		23391	19037	19108	19131	26079	26079					0.07242384440269234
KIHGKQVF	8	Unmodified	_KIHGKQVF_					0	0	0		chr1:111120591-111124742|138|14.03|0.62|4.5|-|0|None,DRAM2|1;ENST00000477769.1_1_1:111662258-111663219:-|nuORF;ENSG00000156171|ENST00000484310|DRAM2	chr1:111120591-111124742|138|14.03|0.62|4.5|-|0|None,DRAM2|1	chr1:111120591-111124742|138|14.03|0.62|4.5|-|0|None,DRAM2|1	MULTI-MSMS	OvCa9_classI_Rep3	3	478.7850341796875	2	478.787444	955.560336	-3.0173	-0.0014446	-1.2965	-0.00062077	-4.3138	-0.0020654	478.78669233564773	146.16	1.5937	145.21	144.8	146.39	-0.95947					82	31	4	0	0	0	0.73626	1	12283	12283		33.516	3.0119	1	384210			23392	237	19109	19132	26080	26080					0.08077787750949028
KIHGKQVF	8	Unmodified	_KIHGKQVF_					0	0	0		chr1:111120591-111124742|138|14.03|0.62|4.5|-|0|None,DRAM2|1;ENST00000477769.1_1_1:111662258-111663219:-|nuORF;ENSG00000156171|ENST00000484310|DRAM2	chr1:111120591-111124742|138|14.03|0.62|4.5|-|0|None,DRAM2|1	chr1:111120591-111124742|138|14.03|0.62|4.5|-|0|None,DRAM2|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.7845458984375	2	478.787444	955.560336	-1.2107	-0.00057965	-3.1443	-0.0015054	-4.3549	-0.0020851	478.7858288212029	146.58	1.5256	145.15	144.7	146.22	-1.4357					68	29	4	0	0	0	0.73288	1	14386	14386		35.201	8.4046	1	466310			23393	237	19109	19132	26081	26081					0.08077787750949028
KIHICKRAQ	9	Unmodified	_KIHICKRAQ_					0	0	0			REV__HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|316|2|anti-sense	REV__HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|316|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.8650512695312	2	548.824035	1095.63352	-0.62047	-0.00034053	2.8284	0.0015523	2.2079	0.0012117	548.8263155031857	55.145	0.34163	55.145	54.891	55.233	0					11	7	2	0	0	0	0.027462	1	4504	4504		24.203	6.8378	1	239210	+		23394	28241	19110	19133	26082	26082					0.08952593201888703
KIHKWAVLI	9	Unmodified	_KIHKWAVLI_					0	0	0			REV__nc|ENSG00000149972|O94779-4|CNTN5	REV__nc|ENSG00000149972|O94779-4|CNTN5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.3233032226562	2	554.355494	1106.69644	-0.77015	-0.00042694	4.3553	0.0024144	3.5851	0.0019874	554.3572426463825	50.831	0.30416	47.658	47.568	47.872	-3.1734					12	5	3	0	0	0	0.027462	1	2971	2971		12.207	0	1	24800	+		23395	20181	19111	19134	26083	26083					0.14735482261608013
KIHLFLVLL	9	Unmodified	_KIHLFLVLL_					0	0	0			REV__ENSG00000085265|ENST00000371806|FCN1	REV__ENSG00000085265|ENST00000371806|FCN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.2925415039062	2	548.36807	1094.72159	-0.025122	-1.3776E-05	-3.4114	-0.0018707	-3.4365	-0.0018845	548.3661628965096	73.649	0.23185	73.649	73.56	73.792	0					9	5	2	0	0	0	0.027462	1	7240	7240		7.6903	4.0059	1	246040	+		23396	17130	19112	19135	26084	26084					0.17801537064178774
KIHLRECLF	9	Unmodified	_KIHLRECLF_					0	0	0			REV__ENST00000463385.5_1_2:99938416-99949470:-|nuORF	REV__ENST00000463385.5_1_2:99938416-99949470:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	579.8259887695312	2	579.826243	1157.63793	-0.28999	-0.00016814	1.3692	0.00079391	1.0792	0.00062577	579.8269259655526	32.273	1.0341	32.273	31.906	32.941	0					34	20	4	0	0	0	0.48324	1	1399	1399		44.117	1.2525	1	207700	+		23397	18248	19113	19136	26085	26085					0.065420576248016
KIHLRECLF	9	Unmodified	_KIHLRECLF_					0	0	0			REV__ENST00000463385.5_1_2:99938416-99949470:-|nuORF	REV__ENST00000463385.5_1_2:99938416-99949470:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	579.826243	1157.63793	0.25433	0.00014747	4.0856	0.0023689	4.3399	0.0025164	579.8292827539808	35.315	0.15037	32.466	32.34	32.491	-2.849	0.096149	0.00097673	NaN	44.117	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10314	+		23398	18248	19113	19136							0.065420576248016
KIHMQLIKD	9	Unmodified	_KIHMQLIKD_					0	0	0		ENST00000451484.6_1_1:151694382-151701309:+|nuORF;ENSG00000178796|ENST00000479191|RIIAD1	ENST00000451484.6_1_1:151694382-151701309:+|nuORF	ENST00000451484.6_1_1:151694382-151701309:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.3287963867188	2	563.326076	1124.6376	1.5805	0.00089036	4.3102	0.0024281	5.8908	0.0033184	563.3283259720058	128.44	1.0061	126.98	126.69	127.69	-1.4565					43	19	4	0	0	0	0.50149	1	12278	12278		42.396	4.5846	1	93924			23399	7777	19114	19137	26086	26086					0.08026637904981726
KIHMQLIKD	9	Unmodified	_KIHMQLIKD_					0	0	0		ENST00000451484.6_1_1:151694382-151701309:+|nuORF;ENSG00000178796|ENST00000479191|RIIAD1	ENST00000451484.6_1_1:151694382-151701309:+|nuORF	ENST00000451484.6_1_1:151694382-151701309:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	563.326076	1124.6376	1.2804	0.00072129	4.4415	0.002502	5.7219	0.0032233	563.3283900240016	127.44	0.84045	127.2	126.89	127.73	-0.2359	0.11167	-0.0002185	NaN	42.396	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79961			23400	7777	19114	19137							0.08026637904981726
KIHMQLIKD	9	Unmodified	_KIHMQLIKD_					0	0	0		ENST00000451484.6_1_1:151694382-151701309:+|nuORF;ENSG00000178796|ENST00000479191|RIIAD1	ENST00000451484.6_1_1:151694382-151701309:+|nuORF	ENST00000451484.6_1_1:151694382-151701309:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	563.326076	1124.6376	0.65545	0.00036923	4.9691	0.0027992	5.6245	0.0031684	563.3288112958152	128.18	0.88908	127.08	126.83	127.71	-1.0933	-0.005578	0.00037589	NaN	42.396	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60489			23401	7777	19114	19137							0.08026637904981726
KIHTRKFRLS	10	Unmodified	_KIHTRKFRLS_					0	0	0			REV__ENST00000461916.5_1_2:95753104-95767538:-|nuORF	REV__ENST00000461916.5_1_2:95753104-95767538:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	429.250244140625	3	429.266568	1284.77787	1.0768	0.00046222	-0.076277	-3.2743E-05	1.0005	0.00042947	429.26645476021207	90.898	0.51913	89.662	89.488	90.007	-1.2355					10	9	2	0	0	0	0.026676	1	8074	8074		45.908	10.756	1	10166	+		23402	19884	19115	19138	26087	26087					0.14687557953561736
KIHTRKFRLS	10	Unmodified	_KIHTRKFRLS_					0	0	0			REV__ENST00000461916.5_1_2:95753104-95767538:-|nuORF	REV__ENST00000461916.5_1_2:95753104-95767538:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	429.2519226074219	3	429.266568	1284.77787	-0.54736	-0.00023496	-0.45065	-0.00019345	-0.99802	-0.00042842	429.2661153370703	91.94	0.15267	89.915	89.839	89.992	-2.0241					4	2	2	0	0	0	0.026757	1	5801	5801		47.228	25.542	1	15766	+		23403	19884	19115	19138	26088	26088					0.14687557953561736
KIHTVEHMI	9	Unmodified	_KIHTVEHMI_					0	0	0		ENST00000510871.5_1_4:40427923-40438677:-|nuORF;ENSG00000163694|ENST00000295971|RBM47;nc|ENSG00000163694|A0AV96-2|RBM47	ENST00000510871.5_1_4:40427923-40438677:-|nuORF	ENST00000510871.5_1_4:40427923-40438677:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	554.3021240234375	2	554.302601	1106.59065	-0.14725	-8.1619E-05	1.5844	0.00087824	1.4372	0.00079662	554.3024718871844	47.344	0.69197	47.344	47.076	47.768	0					34	15	3	0	0	0	0.31747	1	3397	3397		60.972	13.315	1	970990			23404	6347	19116	19139	26089	26089					0.041617783538185904
KIHVGRKTL	9	Unmodified	_KIHVGRKTL_					0	0	0			REV__nc|ENSG00000151322|Q8IXF0-4|NPAS3	REV__nc|ENSG00000151322|Q8IXF0-4|NPAS3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.314453125	2	526.340375	1050.6662	-2.8281	-0.0014886	-1.9189	-0.00101	-4.7471	-0.0024986	526.3391414898356	125.75	1.0265	124.34	124.09	125.12	-1.4143					31	20	2	0	0	0	0.027462	1	11982	11982		39.253	11.371	1	14495	+		23405	15909	19117	19140	26090	26090					0.1428912359642709
KIIACIVF	8	Unmodified	_KIIACIVF_					0	0	0		tr|A0A7D6ZTM9|A0A7D6ZTM9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11835PE=4SV=1	tr|A0A7D6ZTM9|A0A7D6ZTM9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11835PE=4SV=1	tr|A0A7D6ZTM9|A0A7D6ZTM9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11835PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	454.25323486328125	2	453.777699	905.540846	0.77279	0.00035068	3.5391	0.001606	4.3119	0.0019566	453.77910549464104	38.766	0.84165	35.84	35.305	36.146	-2.9264					24	16	2	0	0	0	0.028476	1	1509	1509		14.664	0.88877	1	13017			23406	35756	19118	19141	26091	26091					0.08429695415804872
KIIAFVLEGK	10	Unmodified	_KIIAFVLEGK_					0	0	0		ENSG00000152291|ENST00000377386|TGOLN2;nc|ENSG00000152291|O43493-5|TGOLN2;nc|ENSG00000152291|O43493-3|TGOLN2;nc|ENSG00000152291|O43493-7|TGOLN2;nc|ENSG00000152291|O43493-6|TGOLN2;nc|ENSG00000152291|O43493-4|TGOLN2	ENSG00000152291|ENST00000377386|TGOLN2	ENSG00000152291|ENST00000377386|TGOLN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.352783203125	2	559.352617	1116.69068	0.065815	3.6814E-05	-0.42453	-0.00023746	-0.35871	-0.00020065	559.3519732968504	95.727	2.0571	93.301	92.604	94.661	-2.4256					86	40	4	0	0	0	0.16967	1	8439	8439		99.013	47.82	1	405220			23407	5616	19119	19142	26092	26092					0.1370033895927918
KIIAFVLEGK	10	Unmodified	_KIIAFVLEGK_					0	0	0		ENSG00000152291|ENST00000377386|TGOLN2;nc|ENSG00000152291|O43493-5|TGOLN2;nc|ENSG00000152291|O43493-3|TGOLN2;nc|ENSG00000152291|O43493-7|TGOLN2;nc|ENSG00000152291|O43493-6|TGOLN2;nc|ENSG00000152291|O43493-4|TGOLN2	ENSG00000152291|ENST00000377386|TGOLN2	ENSG00000152291|ENST00000377386|TGOLN2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	559.352617	1116.69068	-0.93695	-0.00052408	0.63327	0.00035422	-0.30368	-0.00016986	559.3527136525539	95.109	1.3399	93.213	92.864	94.204	-1.8956	-0.044072	0.00035064	NaN	99.013	77	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	438580			23408	5616	19119	19142							0.1370033895927918
KIIDEKFEE	9	Unmodified	_KIIDEKFEE_					0	0	0			REV__tr|A0A7D6VNY7|A0A7D6VNY7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14550PE=4SV=1	REV__tr|A0A7D6VNY7|A0A7D6VNY7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14550PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	576.78759765625	2	575.803154	1149.59175	-0.74103	-0.00042669	-0.078408	-4.5148E-05	-0.81944	-0.00047184	575.8033941903985	103.13	1.9368	100.93	100.36	102.3	-2.1994					99	36	4	0	0	0	0.027446	1	9436	9436		69.628	11.398	1	333240	+		23409	31213	19120	19143	26093	26093					0.02294271203709286
KIIEDTLLF	9	Unmodified	_KIIEDTLLF_					0	0	0			REV__tr|A0A7D6VQG6|A0A7D6VQG6_9CLOTRadicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03095PE=4SV=1	REV__tr|A0A7D6VQG6|A0A7D6VQG6_9CLOTRadicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03095PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	546.3226318359375	2	546.320983	1090.62741	0.51802	0.00028301	1.9895	0.0010869	2.5075	0.0013699	546.3219347616409	141.28	0.90393	141.28	140.98	141.88	0					49	17	4	0	0	0	0.40667	1	16508	16508		51.335	0	1	539320	+		23410	31324	19121	19144	26094	26094					0.0857235345135905
KIIEVLGHAL	10	Unmodified	_KIIEVLGHAL_					0	0	0			REV__RAD50|p.A1248G|1|0.93|ENSG00000113522|chr5:132640796-132640796|C/G|missense_variant	REV__RAD50|p.A1248G|1|0.93|ENSG00000113522|chr5:132640796-132640796|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.8401489257812	2	546.842416	1091.67028	-6.4593	-0.0035322	2.5386	0.0013882	-3.9208	-0.0021441	546.8437237604664	159.32	1.8651	157.73	157.41	159.27	-1.5858					118	42	5	0	0	0	0.65434	1	15747	15747		35.618	1.4457	1	864300	+		23411	29328	19122	19145	26095	26095					0.12811168299458586
KIIFNLRY	8	Unmodified	_KIIFNLRY_					0	0	0			REV__tr|A0A7D6ZSF5|A0A7D6ZSF5_9CLOTMurR/RpiRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15645PE=4SV=1	REV__tr|A0A7D6ZSF5|A0A7D6ZSF5_9CLOTMurR/RpiRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15645PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.8040771484375	2	533.824027	1065.6335	-1.406	-0.00075057	-3.2721	-0.0017467	-4.6781	-0.0024973	533.8221144623702	46.468	1.3815	43.396	43.136	44.517	-3.0724					66	26	4	0	0	0	0.028476	1	2431	2431		33.516	9.3128	1	181350	+		23412	32184	19123	19146	26096	26096					0.10330916473549223
KIIGVTPMVD	10	Unmodified	_KIIGVTPMVD_					0	0	0		tr|A0A7D6VVE7|A0A7D6VVE7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04890PE=4SV=1	tr|A0A7D6VVE7|A0A7D6VVE7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04890PE=4SV=1	tr|A0A7D6VVE7|A0A7D6VVE7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04890PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	536.8082885742188	2	536.807185	1071.59982	0.23954	0.00012858	2.8518	0.0015308	3.0913	0.0016594	536.808594253858	65.887	1.3438	63.191	62.771	64.114	-2.6958					79	26	4	0	0	0	0.6349	1	5068	5068		37.812	0.65241	1	1324500			23413	35219	19124	19147	26097	26097					0.0668812691947096
KIIHLLCGVI	10	Unmodified	_KIIHLLCGVI_					0	0	0		ENST00000371059.7_1_1:66038015-66038081:+|nuORF	ENST00000371059.7_1_1:66038015-66038081:+|nuORF	ENST00000371059.7_1_1:66038015-66038081:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	554.7697143554688	2	554.849187	1107.68382	-0.14132	-7.8412E-05	-3.3798	-0.0018753	-3.5211	-0.0019537	554.8471397374888	107.29	0.92581	106.02	105.86	106.78	-1.267					31	17	2	0	0	0	0.027117	1	7603	7603		30.504	0	1	39443			23414	10946	19125	19148	26098	26098					0.13428702807050286
KIIHQCLKK	9	Carbamidomethyl (C)	_KIIHQC(Carbamidomethyl (C))LKK_	KIIHQC(1)LKK		KIIHQC(41)LKK		0	1	0			REV__ENSG00000136144|ENST00000378302|RCBTB1	REV__ENSG00000136144|ENST00000378302|RCBTB1	MULTI-MSMS	OvCa9_classI_Rep2	2	584.356689453125	2	584.355168	1166.69578	-2.3121	-0.0013511	4.4342	0.0025912	2.1222	0.0012401	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.52083	1	14790	14790		40.573	13.88	1	180810	+		23415	19360	19126	19149	26099	26099	214				0.1191031955024755
KIIKIIITV	9	Unmodified	_KIIKIIITV_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	OvCa99_classI_Rep5	1	520.8767700195312	2	520.875728	1039.7369	2.7122	0.0014127	-0.82118	-0.00042773	1.891	0.00098499	520.8752146792467	97.633	1.4169	97.633	97.135	98.552	0					115	32	5	0	0	0	0.025955	4	10706	10706;10732;10762;10795		139.97	17.794	1	12146000			23416	7740	19127	19150	26100;26101;26102;26103	26100					0.2186240386135978
KIIKPYDVN	9	Unmodified	_KIIKPYDVN_					0	0	0			REV__ENSG00000134627|ENST00000299001|PIWIL4	REV__ENSG00000134627|ENST00000299001|PIWIL4	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.3177490234375	2	545.318774	1088.623	-0.51372	-0.00028014	-3.2363	-0.0017648	-3.75	-0.002045	545.3169196404446	142.63	4.7541	141.19	139.73	144.49	-1.4427					172	91	2	0	0	0	0.61365	1	13933	13933		30.318	6.795	1	155190	+		23417	19216	19128	19151	26104	26104					0.08222889028479585
KIILLGVTSI	10	Unmodified	_KIILLGVTSI_					0	0	0		ENST00000484738.1_1_1:244819598-244819724:+|nuORF	ENST00000484738.1_1_1:244819598-244819724:+|nuORF	ENST00000484738.1_1_1:244819598-244819724:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.31689453125	2	528.854993	1055.69543	-0.99349	-0.00052541	-2.1896	-0.001158	-3.1831	-0.0016834	528.854020969624	65.986	0.27019	65.986	65.904	66.174	0					12	6	2	0	0	0	0.027145	1	6100	6100		18.262	6.0552	1	367610			23418	12603	19129	19152	26105	26105					0.16981223102038712
KIILNKLGI	9	Unmodified	_KIILNKLGI_					0	0	0		tr|A0A7D7A2S8|A0A7D7A2S8_9CLOTABC-FfamilyATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18530PE=4SV=1	tr|A0A7D7A2S8|A0A7D7A2S8_9CLOTABC-FfamilyATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18530PE=4SV=1	tr|A0A7D7A2S8|A0A7D7A2S8_9CLOTABC-FfamilyATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18530PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	506.3504333496094	2	506.349877	1010.6852	2.1467	0.001087	-0.10025	-5.0761E-05	2.0464	0.0010362	506.3496575715992	93.865	0.97	93.865	93.59	94.56	0					50	22	3	0	0	0	0.12365	1	10219	10219		90.777	8.4716	1	2743500			23419	36089	19130	19153	26106	26106					0.18028660167453836
KIILRFFQ	8	Unmodified	_KIILRFFQ_					0	0	0		tr|A0A7D6ZGJ8|A0A7D6ZGJ8_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18950PE=4SV=1	tr|A0A7D6ZGJ8|A0A7D6ZGJ8_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18950PE=4SV=1	tr|A0A7D6ZGJ8|A0A7D6ZGJ8_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18950PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	533.8087768554688	2	532.834394	1063.65424	-0.17799	-9.4841E-05	3.2126	0.0017118	3.0346	0.0016169	532.835823655926	95.417	1.5405	93.521	93.014	94.554	-1.8956					62	30	3	0	0	0	0.028476	1	6258	6258		35.201	9.7505	1	258770			23420	35546	19131	19154	26107	26107					0.12495506853201732
KIINDNGTY	9	Unmodified	_KIINDNGTY_					0	0	0		NOP56|p.A208G|1|0.11|ENSG00000101361|chr20:2655378-2655378|C/G|missense_variant	NOP56|p.A208G|1|0.11|ENSG00000101361|chr20:2655378-2655378|C/G|missense_variant	NOP56|p.A208G|1|0.11|ENSG00000101361|chr20:2655378-2655378|C/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.8331298828125	2	519.266739	1036.51892	1.235	0.0006413	0.79554	0.0004131	2.0306	0.0010544	519.266927232145	87.516	0.74014	87.516	87.054	87.794	0					26	17	3	0	0	0	0.027441	1	9296	9296		40.778	0	1	480160			23421	15435	19132	19155	26108	26108					0.002125622009543804
KIINGVGPLVN	11	Unmodified	_KIINGVGPLVN_					0	0	0			REV__ENST00000513321.1_1_4:178231246-178274506:+|nuORF	REV__ENST00000513321.1_1_4:178231246-178274506:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	562.3442993164062	2	562.345323	1122.67609	-1.142	-0.00064221	-2.621	-0.0014739	-3.7631	-0.0021161	562.3438081477608	141.84	4.7959	141.62	140.24	145.03	-0.22697					133	96	2	0	0	0	0.72473	1	14434	14434		19.104	3.4617	1	113870	+		23422	17940	19133	19156	26109	26109					0.11966266811123205
KIINNINIE	9	Unmodified	_KIINNINIE_					0	0	0		tr|A0A7D6ZNG0|A0A7D6ZNG0_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_16340PE=4SV=1	tr|A0A7D6ZNG0|A0A7D6ZNG0_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_16340PE=4SV=1	tr|A0A7D6ZNG0|A0A7D6ZNG0_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_16340PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.80029296875	2	535.813856	1069.61316	1.7924	0.00096041	-0.76959	-0.00041236	1.0228	0.00054805	535.8134784871443	106.84	0.39189	106.84	106.63	107.02	0					15	8	2	0	0	0	0.027217	1	12011	12011		93.195	5.499	1	632710			23423	35678	19134	19157	26110	26110					0.08113701023080466
KIISEEVQ	8	Unmodified	_KIISEEVQ_					0	0	0		ENSG00000144452|ENST00000272895|ABCA12;nc|ENSG00000144452|Q86UK0-2|ABCA12	ENSG00000144452|ENST00000272895|ABCA12	ENSG00000144452|ENST00000272895|ABCA12	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.2606506347656	2	473.266207	944.517862	0.0075308	3.5641E-06	0.044983	2.1289E-05	0.052514	2.4853E-05	473.26609669374415	104.85	1.0347	104.85	104.54	105.57	0					49	23	3	0	0	0	0.028476	1	11724	11724		49.442	0	1	703730			23424	5152	19135	19158	26111	26111					0.04338347832049294
KIITYDLIK	9	Unmodified	_KIITYDLIK_					0	0	0		nc|ENSG00000140284|O14975-2|SLC27A2;ENSG00000140284|ENST00000267842|SLC27A2;ENST00000559938.1_1_15:50515185-50518319:+|nuORF	nc|ENSG00000140284|O14975-2|SLC27A2	nc|ENSG00000140284|O14975-2|SLC27A2	MULTI-MSMS	OvCa99_classI_Rep5	1	553.8449096679688	2	553.844625	1105.6747	-0.55258	-0.00030604	-2.3553	-0.0013045	-2.9079	-0.0016105	553.8432194309323	50.663	0.78786	50.663	50.376	51.164	0					41	17	4	0	0	0	0.38969	1	3877	3877		52.937	5.2794	1	2297000			23425	4830	19136	19159	26112	26112					0.12608632722367474
KIIVKVTKP	9	Unmodified	_KIIVKVTKP_					0	0	0			REV__ENST00000205636.3_1_3:32524601-32524697:-|nuORF	REV__ENST00000205636.3_1_3:32524601-32524697:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	513.3595581054688	2	513.357702	1024.70085	1.0987	0.00056403	0.88402	0.00045382	1.9827	0.0010179	513.3580153371627	143.17	1.4241	143.17	142.78	144.21	0					52	28	3	0	0	0	0.66262	1	16751	16751		24.519	1.4767	1	101300	+		23426	23704	19137	19160	26113	26113					0.18948946684486145
KIIVQRVLA	9	Unmodified	_KIIVQRVLA_					0	0	0			REV__ENSG00000164294|ENST00000503787|GPX8	REV__ENSG00000164294|ENST00000503787|GPX8	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.2356567382812	2	520.352951	1038.69135	2.0796	0.0010821	0.031285	1.6279E-05	2.1109	0.0010984	520.3526576890457	94.51	0.47046	94.51	94.177	94.648	0					20	10	3	0	0	0	0.027462	1	10290	10290		23.042	0	1	244610	+		23427	20968	19138	19161	26114	26114					0.1735517839899785
KIIVSLYISN	10	Unmodified	_KIIVSLYISN_					0	0	0		tr|A0A7D6ZGH3|A0A7D6ZGH3_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_18625PE=4SV=1	tr|A0A7D6ZGH3|A0A7D6ZGH3_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_18625PE=4SV=1	tr|A0A7D6ZGH3|A0A7D6ZGH3_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_18625PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	575.3445434570312	2	575.347532	1148.68051	-6.2917	-0.0036199	2.5771	0.0014827	-3.7146	-0.0021372	575.3489585356984	154.97	1.0558	153.9	153.56	154.61	-1.073					68	25	4	0	0	0	0.77039	1	13349	13349		22.58	4.3176	1	137860			23428	35544	19139	19162	26115	26115					0.11211731234061517
KIIWPLIIAS	10	Unmodified	_KIIWPLIIAS_					0	0	0			REV__ENST00000475007.5_1_7:150500316-150501569:+|nuORF	REV__ENST00000475007.5_1_7:150500316-150501569:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	577.3687133789062	2	577.37081	1152.72707	-0.0015386	-8.8833E-07	-3.7939	-0.0021905	-3.7954	-0.0021914	577.368591979319	125.62	1.9266	125.38	125.01	126.94	-0.2359					114	38	5	0	0	0	0.49558	2	12274	12227;12274		54.776	6.8168	1	983740	+		23429	26350	19140	19163	26116;26117	26117					0.1568121585598874
KIIWPLIIAS	10	Unmodified	_KIIWPLIIAS_					0	0	0			REV__ENST00000475007.5_1_7:150500316-150501569:+|nuORF	REV__ENST00000475007.5_1_7:150500316-150501569:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	577.368408203125	2	577.37081	1152.72707	0.41999	0.00024249	-4.1272	-0.0023829	-3.7073	-0.0021405	577.3683674642078	126.91	1.704	125.83	125.44	127.14	-1.0715					108	32	5	0	0	0	0.45822	3	9953	9912;9947;9953		60.118	19.34	1	1015500	+		23430	26350	19140	19163	26118;26119;26120	26120					0.1568121585598874
KIKALNINI	9	Unmodified	_KIKALNINI_					0	0	0			REV__tr|A0A7D7A4G8|A0A7D7A4G8_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01670PE=4SV=1	REV__tr|A0A7D7A4G8|A0A7D7A4G8_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01670PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	514.8038940429688	2	513.837134	1025.65972	-0.4129	-0.00021216	-0.66059	-0.00033944	-1.0735	-0.0005516	513.8370062460822	94.265	1.5664	92.37	91.898	93.465	-1.8956					42	30	2	0	0	0	0.027462	1	6152	6152		15.642	0	1	15661	+		23431	32607	19141	19164	26121	26121					0.1479118564500368
KIKATVEEL	9	Unmodified	_KIKATVEEL_					0	0	0		ENST00000508482.5_1_17:48797176-48828101:+|nuORF;ENSG00000108848|ENST00000505658|LUC7L3	ENST00000508482.5_1_17:48797176-48828101:+|nuORF	ENST00000508482.5_1_17:48797176-48828101:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.271728515625	2	515.810782	1029.60701	-0.85253	-0.00043975	-3.6918	-0.0019043	-4.5444	-0.002344	515.809142286942	82.242	0.63451	79.559	79.393	80.028	-2.6829					15	12	2	0	0	0	0.027433	1	6797	6797		60.972	0	1	38214			23432	2683	19142	19165	26122	26122					0.09339182791563871
KIKATVEEL	9	Unmodified	_KIKATVEEL_					0	0	0		ENST00000508482.5_1_17:48797176-48828101:+|nuORF;ENSG00000108848|ENST00000505658|LUC7L3	ENST00000508482.5_1_17:48797176-48828101:+|nuORF	ENST00000508482.5_1_17:48797176-48828101:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	515.810782	1029.60701	-0.19735	-0.0001018	-0.99129	-0.00051132	-1.1886	-0.00061311	515.8100757857072	81.943	0.60446	79.646	79.434	80.039	-2.2963	0.043605	0.0006278	NaN	42.396	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28733			23433	2683	19142	19165							0.09339182791563871
KIKCVEIVK	9	Unmodified	_KIKCVEIVK_					0	0	0		ENSG00000135605|ENST00000381501|TEC	ENSG00000135605|ENST00000381501|TEC	ENSG00000135605|ENST00000381501|TEC	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7899169921875	2	530.33337	1058.65219	-0.85695	-0.00045447	0.44326	0.00023508	-0.41369	-0.00021939	530.8353224123886	50.028	0.2571	50.028	49.856	50.114	0					8	5	2	0	0	0	0.027462	1	3773	3773		14.137	3.2716	1	79218			23434	4392	19143	19166	26123	26123					0.12520710053104267
KIKDLGHQLTE	11	Unmodified	_KIKDLGHQLTE_					0	0	0		tr|A0A553SHE9|A0A553SHE9_NIACIHypoxanthinephosphoribosyltransferaseOS=NialliacirculansOX=1397GN=hptPE=3SV=1	tr|A0A553SHE9|A0A553SHE9_NIACIHypoxanthinephosphoribosyltransferaseOS=NialliacirculansOX=1397GN=hptPE=3SV=1	tr|A0A553SHE9|A0A553SHE9_NIACIHypoxanthinephosphoribosyltransferaseOS=NialliacirculansOX=1397GN=hptPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	427.90985107421875	3	427.910227	1280.70885	1.306	0.00055883	-3.664	-0.0015679	-2.3581	-0.001009	427.90865161347017	37.38	1.3943	34.488	34.142	35.536	-2.8925					83	27	4	0	0	0	0.70587	1	1355	1355		27.644	0.59661	1	494530			23435	33262	19144	19167	26124	26124					0.0797242914331946
KIKDSLTPI	9	Unmodified	_KIKDSLTPI_					0	0	0		tr|A0A7D6VPY0|A0A7D6VPY0_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_00695PE=4SV=1	tr|A0A7D6VPY0|A0A7D6VPY0_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_00695PE=4SV=1	tr|A0A7D6VPY0|A0A7D6VPY0_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_00695PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7727966308594	2	507.813325	1013.6121	2.2778	0.0011567	-1.3231	-0.0006719	0.95473	0.00048482	507.8126384440679	76.286	0.28967	76.286	76.115	76.405	0					9	6	2	0	0	0	0.027462	1	7656	7656		14.137	0	1	85358			23436	34807	19145	19168	26125	26125					0.10583486654184071
KIKDSMKLI	9	Unmodified	_KIKDSMKLI_					0	0	0		nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2;ENST00000593854.5_1_19:7709481-7711320:+|nuORF	nc|ENSG00000076944|Q15833-2|STXBP2	nc|ENSG00000076944|Q15833-2|STXBP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.3298950195312	2	538.330827	1074.6471	0.032421	1.7453E-05	-3.7098	-0.0019971	-3.6774	-0.0019796	538.3286452406022	84.37	2.265	81.707	81.412	83.677	-2.6629					106	46	4	0	0	0	0.37135	1	7101	7101		54.776	3.4409	1	906360			23437	1561	19146	19169	26126	26126					0.11276406190495436
KIKEIAVTV	9	Unmodified	_KIKEIAVTV_					0	0	0		ENST00000461290.5_1_2:73461506-73471178:+|nuORF;nc|ENSG00000135624|Q99832-4|CCT7;nc|ENSG00000135624|Q99832-3|CCT7;ENSG00000135624|ENST00000258091|CCT7	ENST00000461290.5_1_2:73461506-73471178:+|nuORF	ENST00000461290.5_1_2:73461506-73471178:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	500.8257141113281	2	500.823692	999.632832	-0.95751	-0.00047954	0.026145	1.3094E-05	-0.93136	-0.00046645	500.8236157490908	65.966	1.8239	65.966	65.665	67.489	0					89	45	4	0	0	0	0.2077	1	6076	6076		75.043	12.936	1	23769000			23438	4393	19147	19170	26127	26127					0.13300077033829893
KIKEVTEEV	9	Unmodified	_KIKEVTEEV_					0	0	0		nc|ENSG00000171109|Q8IWA4-3|MFN1;ENSG00000171109|ENST00000471841|MFN1;ENST00000482661.1_1_3:179094869-179095079:+|nuORF	nc|ENSG00000171109|Q8IWA4-3|MFN1	nc|ENSG00000171109|Q8IWA4-3|MFN1	MULTI-MSMS	OvCa99_classI_Rep5	1	537.805908203125	2	537.805697	1073.59684	-0.1716	-9.2288E-05	1.7332	0.00093215	1.5616	0.00083986	537.8055351356038	47.232	0.99947	47.232	46.985	47.984	0					49	22	4	0	0	0	0.2077	1	3404	3404		75.043	11.509	1	1561100			23439	7172	19148	19171	26128	26128					0.06298575066307421
KIKFDAGTLL	10	Unmodified	_KIKFDAGTLL_					0	0	0		ENST00000475375.1_1_13:53010343-53024741:-|nuORF;ENSG00000136100|ENST00000378060|VPS36	ENST00000475375.1_1_13:53010343-53024741:-|nuORF	ENST00000475375.1_1_13:53010343-53024741:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	553.331787109375	2	553.334424	1104.6543	-2.8766	-0.0015917	-0.88706	-0.00049084	-3.7637	-0.0020826	553.3337794849177	152.41	1.17	152.18	151.83	153	-0.22696					55	23	3	0	0	0	0.82648	1	15520	15520		15.642	0	1	86016			23440	4456	19149	19172	26129	26129					0.10615462062582992
KIKHAPSNLFK	11	Unmodified	_KIKHAPSNLFK_					0	0	0			REV__tr|A0A7D6VMP6|A0A7D6VMP6_9CLOTUvrABCsystemproteinAOS=ClostridiumintestinaleOX=36845GN=HZF06_12625PE=3SV=1	REV__tr|A0A7D6VMP6|A0A7D6VMP6_9CLOTUvrABCsystemproteinAOS=ClostridiumintestinaleOX=36845GN=HZF06_12625PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.883056640625	2	641.885147	1281.75574	-3.6311	-0.0023307	-0.33677	-0.00021616	-3.9678	-0.0025469	641.8847801872174	153.39	4.0845	151.94	150.68	154.77	-1.4516					420	106	6	0	0	0	0.72473	1	15111	15111		19.104	0	1	809780	+		23441	31142	19150	19173	26130	26130					0.1261333348509197
KIKHILEEI	9	Unmodified	_KIKHILEEI_					0	0	0		sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1;sp|F5HC79|TRM1_HCMVMTripartiteterminasesubunit1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=TRM1PE=3SV=1	sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1	sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	561.8471069335938	2	561.847699	1121.68084	1.4749	0.00082867	-3.2225	-0.0018106	-1.7476	-0.00098188	561.845750192742	157.32	1.5158	157.32	156.95	158.46	0					97	30	5	0	0	0	0.55588	1	18457	18457		37.159	5.2042	1	1429200			23442	32855	19151	19174	26131	26131					0.12487150953893433
KIKKGEIDV	9	Unmodified	_KIKKGEIDV_					0	0	0			REV__ENST00000462680.5_1_1:153955993-153958658:-|nuORF	REV__ENST00000462680.5_1_1:153955993-153958658:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.8019409179688	2	515.318774	1028.623	-0.68814	-0.00035461	-0.0058833	-3.0318E-06	-0.69402	-0.00035764	515.318786879756	40.087	0.66636	37.133	36.913	37.58	-2.9541					23	12	3	0	0	0	0.027462	1	1721	1721		34.173	6.2903	1	48745	+		23443	19850	19152	19175	26132	26132					0.10982889028446152
KIKKKKVPK	9	Unmodified	_KIKKKKVPK_					0	0	0			REV__CSNK2A2|p.R81Q|1|0.12|ENSG00000070770|chr16:58186831-58186831|C/T|missense_variant	REV__CSNK2A2|p.R81Q|1|0.12|ENSG00000070770|chr16:58186831-58186831|C/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.8650512695312	2	548.900069	1095.78558	-0.62247	-0.00034167	-0.41363	-0.00022704	-1.0361	-0.00056871	548.900078620927	55.172	0.50997	55.172	54.891	55.401	0					17	11	2	0	0	0	0.027462	1	4504	4504		11.511	0	1	326770	+		23444	16245	19153	19176	26133	26133					0.24152317221114572
KIKKNYEVTI	10	Unmodified	_KIKKNYEVTI_					0	0	0		nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	MULTI-SECPEP	OvCa9_classI_Rep4_	4	413.2414855957031	3	412.583451	1234.72852	0.47694	0.00019678	-2.6319	-0.0010859	-2.1549	-0.00088908	412.58234088186924	65.009	1.2117	61.523	61.212	62.423	-3.4854					56	24	4	0	0	0	0.026843	1	4640	4640		54.722	7.4947	1	187100			23445	14857	19154	19177	26134	26134					0.12054805154093629
KIKKVDVHV	9	Unmodified	_KIKKVDVHV_					0	0	0			REV__tr|A0A553SQ22|A0A553SQ22_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16765PE=4SV=1	REV__tr|A0A553SQ22|A0A553SQ22_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16765PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	533.3397827148438	2	533.342584	1064.67061	-5.4486	-0.002906	1.332	0.00071043	-4.1166	-0.0021955	533.3431726379797	156.49	1.098	155.32	155.02	156.12	-1.1707					66	21	4	0	0	0	0.62352	1	13476	13476		29.15	6.1071	1	385900	+		23446	30599	19155	19178	26135	26135					0.1408658801931324
KIKLEKEPV	9	Unmodified	_KIKLEKEPV_					0	0	0			REV__tr|A0A553SN20|A0A553SN20_NIACIDUF2157domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23520PE=4SV=1	REV__tr|A0A553SN20|A0A553SN20_NIACIDUF2157domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23520PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.3220825195312	2	542.342249	1082.66995	-1.6855	-0.00091413	1.1046	0.00059909	-0.5809	-0.00031505	542.3426863476985	120.18	0.83481	118.83	118.61	119.45	-1.3444					28	15	2	0	0	0	0.027462	1	11356	11356		49.536	11.725	1	42518	+		23447	30388	19156	19179	26136	26136					0.13191748579583873
KIKLKGEKF	9	Unmodified	_KIKLKGEKF_					0	0	0			REV__ENSG00000140043|ENST00000555661|PTGR2	REV__ENSG00000140043|ENST00000555661|PTGR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.7909545898438	2	545.852784	1089.69102	-0.16185	-8.8344E-05	-0.4437	-0.00024219	-0.60554	-0.00033054	545.8521922924626	30.657	0.29814	30.657	30.483	30.781	0					7	5	2	0	0	0	0.027462	1	1184	1184		39.253	22.78	1	21669	+		23448	19650	19157	19180	26137	26137					0.14975758679133833
KIKLKMIIFL	10	Unmodified	_KIKLKMIIFL_					0	0	0		tr|A0A553SRD1|A0A553SRD1_NIACIBeta-1,6-glucanaseOS=NialliacirculansOX=1397GN=CEQ21_00860PE=3SV=1	tr|A0A553SRD1|A0A553SRD1_NIACIBeta-1,6-glucanaseOS=NialliacirculansOX=1397GN=CEQ21_00860PE=3SV=1	tr|A0A553SRD1|A0A553SRD1_NIACIBeta-1,6-glucanaseOS=NialliacirculansOX=1397GN=CEQ21_00860PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	623.9182739257812	2	623.919613	1245.82467	-5.6275	-0.0035111	2.2677	0.0014149	-3.3597	-0.0020962	623.9209249558969	163.4	0.91801	163.18	162.75	163.67	-0.22696					66	30	3	0	0	0	0.89674	1	16642	16642		6.7355	0.42289	1	62419			23449	34251	19158	19181	26138	26138					0.21159281460472812
KIKLLDSDIDI	11	Unmodified	_KIKLLDSDIDI_					0	0	0		tr|A0A7D6ZZS2|A0A7D6ZZS2_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07315PE=4SV=1	tr|A0A7D6ZZS2|A0A7D6ZZS2_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07315PE=4SV=1	tr|A0A7D6ZZS2|A0A7D6ZZS2_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07315PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	636.8759155273438	2	636.874111	1271.73367	1.4047	0.00089461	-0.77199	-0.00049166	0.63269	0.00040295	636.8732542748858	139.08	0.82175	139.08	138.74	139.56	0					39	16	4	0	0	0	0.65063	1	16253	16253		40.058	2.55	1	314290			23450	35971	19159	19182	26139	26139					0.10867064226022194
KIKMIDMPVE	10	Unmodified	_KIKMIDMPVE_					0	0	0		ENST00000570051.5_1_16:2312273-2318093:-|nuORF;nc|ENSG00000205937|Q15287-3|RNPS1;nc|ENSG00000205937|Q15287-2|RNPS1;ENSG00000205937|ENST00000320225|RNPS1	ENST00000570051.5_1_16:2312273-2318093:-|nuORF	ENST00000570051.5_1_16:2312273-2318093:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.2115478515625	3	401.887377	1202.6403	0.548	0.00022023	1.5585	0.00062633	2.1065	0.00084656	401.88844039755907	49.936	0.64922	49.936	49.507	50.156	0					22	14	2	0	0	0	0.026942	1	3768	3768		26.063	6.8007	1	274970			23451	9091	19160	19183	26140	26140					0.047087252475876085
KIKNAAEE	8	Unmodified	_KIKNAAEE_					0	0	0			REV__tr|A0A7D6ZZY0|A0A7D6ZZY0_9CLOTDUF445domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21985PE=3SV=1	REV__tr|A0A7D6ZZY0|A0A7D6ZZY0_9CLOTDUF445domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21985PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	451.7506408691406	2	451.750724	901.486896	-0.10534	-4.7589E-05	0.11064	4.9982E-05	0.005299	2.3938E-06	451.7506325319354	35.962	0.55169	35.962	35.753	36.304	0					26	11	3	0	0	0	0.61436	1	1861	1861		60.972	0.67798	1	529290	+		23452	32428	19161	19184	26141	26141					0.03221194517789172
KIKNQLEKV	9	Unmodified	_KIKNQLEKV_					0	0	0			REV__nc|ENSG00000203859|P26439-2|HSD3B2	REV__nc|ENSG00000203859|P26439-2|HSD3B2	MULTI-MSMS	OvCa99_classI_Rep5	1	550.3449096679688	2	550.345323	1098.67609	-0.80917	-0.00044533	0.35858	0.00019734	-0.4506	-0.00024798	550.3454137789981	33.848	0.76561	33.848	33.632	34.398	0					34	15	4	0	0	0	0.13504	1	1589	1589		87.696	4.946	1	840930	+		23453	29095	19162	19185	26142	26142					0.13070266811109832
KIKNQLEKV	9	Unmodified	_KIKNQLEKV_					0	0	0			REV__nc|ENSG00000203859|P26439-2|HSD3B2	REV__nc|ENSG00000203859|P26439-2|HSD3B2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	550.345323	1098.67609	-2.1457	-0.0011809	1.8795	0.0010344	-0.26628	-0.00014654	550.3462272843921	36.762	1.0351	34.052	33.844	34.879	-2.7097	0.11234	0.0020448	NaN	87.696	39	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90781	+		23454	29095	19162	19185							0.13070266811109832
KIKNSGHVIR	10	Unmodified	_KIKNSGHVIR_					0	0	0			REV__ENST00000544802.5_1_7:72593260-72619478:+|nuORF	REV__ENST00000544802.5_1_7:72593260-72619478:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	576.35400390625	2	576.354014	1150.69348	-0.29031	-0.00016732	-0.5669	-0.00032673	-0.85721	-0.00049406	576.3537371528553	71.759	4.075	69.252	68.91	72.985	-2.5071					188	77	5	0	0	0	0.55109	1	5805	5805		47.96	0.30219	1	5146300	+		23455	27405	19163	19186	26143	26143					0.1241560713679064
KIKPCIYLK	9	Unmodified	_KIKPCIYLK_					0	0	0		ENST00000380916.8_1_9:14611214-14611316:-|nuORF	ENST00000380916.8_1_9:14611214-14611316:-|nuORF	ENST00000380916.8_1_9:14611214-14611316:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.3240356445312	2	553.343738	1104.67292	0.49263	0.00027259	-2.177	-0.0012046	-1.6844	-0.00093203	553.3424735996932	45.731	0.25918	45.731	45.54	45.8	0					6	5	2	0	0	0	0.027462	1	3166	3166		30.504	8.8013	1	35657			23456	11155	19164	19187	26144	26144					0.12477300432738048
KIKPNRFP	8	Unmodified	_KIKPNRFP_					0	0	0		ENST00000503790.6_1_5:49961779-49961854:+|nuORF	ENST00000503790.6_1_5:49961779-49961854:+|nuORF	ENST00000503790.6_1_5:49961779-49961854:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.78729248046875	2	500.308544	998.602535	2.881	0.0014414	-1.8593	-0.00093021	1.0217	0.00051116	500.3074367288202	89.87	0.58765	89.87	89.641	90.228	0					24	13	2	0	0	0	0.028476	1	9595	9595		18.324	0	1	774530			23457	12866	19165	19188	26145	26145					0.10317763159309834
KIKPPFKP	8	Unmodified	_KIKPPFKP_					0	0	0		ENST00000494472.1_1_2:46378245-46386996:+|nuORF;ENSG00000171132|ENST00000306156|PRKCE	ENST00000494472.1_1_2:46378245-46386996:+|nuORF	ENST00000494472.1_1_2:46378245-46386996:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	477.8066711425781	2	477.810388	953.606223	-1.2433	-0.00059405	-3.2158	-0.0015365	-4.459	-0.0021306	477.80882070384433	67.703	1.8807	65.042	64.644	66.524	-2.661					104	37	5	0	0	0	0.73626	1	5317	5317		33.516	1.5607	1	318320			23458	7175	19166	19189	26146	26146					0.12756432933167616
KIKREIQNL	9	Unmodified	_KIKREIQNL_					0	0	0		ENSG00000162409|ENST00000371244|PRKAA2	ENSG00000162409|ENST00000371244|PRKAA2	ENSG00000162409|ENST00000371244|PRKAA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.7632446289062	2	571.356222	1140.69789	-0.81458	-0.00046542	0.23252	0.00013285	-0.58206	-0.00033256	571.3562039238922	41.831	0.47409	41.831	41.637	42.111	0					15	10	2	0	0	0	0.027455	1	2621	2621		51.335	3.6781	1	129190			23459	6179	19167	19190	26147	26147					0.13317071559708893
KIKSQSRNT	9	Unmodified	_KIKSQSRNT_					0	0	0			REV__tr|A0A7D7A4G3|A0A7D7A4G3_9CLOTYcxBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01565PE=4SV=1	REV__tr|A0A7D7A4G3|A0A7D7A4G3_9CLOTYcxBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01565PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.275634765625	2	531.306729	1060.59891	-0.17305	-9.1945E-05	4.0187	0.0021352	3.8457	0.0020432	531.3086577029875	42.967	0.4787	42.967	42.665	43.143	0					16	10	2	0	0	0	0.027462	1	2825	2825		37.812	4.9991	1	116900	+		23460	32605	19168	19191	26148	26148					0.07103048594785832
KIKTWKKRWFV	11	Unmodified	_KIKTWKKRWFV_					0	0	0		ENST00000486886.1_1_3:111680917-111693407:+|nuORF;nc|ENSG00000144824|Q86SQ0-2|PHLDB2;nc|ENSG00000144824|Q86SQ0-3|PHLDB2;ENSG00000144824|ENST00000431670|PHLDB2	ENST00000486886.1_1_3:111680917-111693407:+|nuORF	ENST00000486886.1_1_3:111680917-111693407:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.3093566894531	3	507.313518	1518.91872	-5.239	-0.0026578	-2.1451	-0.0010882	-7.3841	-0.0037461	507.3121827583452	162.21	1.6448	161.98	160.99	162.64	-0.22697					94	32	4	0	0	0	0.72582	1	16449	16449		3.2113	0	1	66373			23461	5184	19169	19192	26149	26149					0.18002136606924068
KIKVFTKAPHN	11	Unmodified	_KIKVFTKAPHN_					0	0	0			REV__ENSG00000165617|ENST00000395153|DACT1	REV__ENSG00000165617|ENST00000395153|DACT1	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8822631835938	2	641.885147	1281.75574	-4.6434	-0.0029805	0.6524	0.00041876	-3.991	-0.0025618	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.72064	1	15618	15618		22.58	2.5829	1	543390	+		23462	21101	19170	19193	26150	26150					0.12613333485114708
KIKVVLSVL	9	Unmodified	_KIKVVLSVL_					0	0	0			REV__ENST00000477216.1_1_3:170077637-170077703:+|nuORF	REV__ENST00000477216.1_1_3:170077637-170077703:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.78729248046875	2	499.852253	997.689953	2.9174	0.0014583	0.0099328	4.9649E-06	2.9273	0.0014632	499.8518799158672	89.862	0.50165	89.862	89.6	90.101	0					24	11	3	0	0	0	0.027448	1	9595	9595		14.865	3.3539	1	448370	+		23463	26385	19171	19194	26151	26151					0.19101544310228746
KILAAIIQV	9	Unmodified	_KILAAIIQV_					0	0	0			REV__ENSG00000124486|ENST00000378308|USP9X	REV__ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	OvCa99_classI_Rep5	1	484.83026123046875	2	484.828778	967.643003	-0.19898	-9.6472E-05	0.77448	0.00037549	0.5755	0.00027902	484.8290290545469	71.227	0.96175	71.227	70.954	71.916	0					41	23	3	0	0	0	0.10363	1	6889	6889		96.19	5.4138	1	1972600	+		23464	18688	19172	19195	26152	26152					0.15788684759081661
KILASAGHATL	11	Unmodified	_KILASAGHATL_					0	0	0			REV__ENSG00000139645|ENST00000267116|ANKRD52	REV__ENSG00000139645|ENST00000267116|ANKRD52	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.2852172851562	2	541.321848	1080.62914	1.824	0.00098735	-0.3542	-0.00019174	1.4698	0.00079561	541.3215687797431	77.813	0.29659	77.813	77.588	77.884	0					9	6	2	0	0	0	0.02538	1	7861	7861		23.523	0	1	159980	+		23465	19627	19173	19196	26153	26153					0.09205407259992171
KILAWLSWP	9	Unmodified	_KILAWLSWP_					0	0	0		ENST00000561481.1_1_16:74497146-74501752:-|nuORF	ENST00000561481.1_1_16:74497146-74501752:-|nuORF	ENST00000561481.1_1_16:74497146-74501752:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	556.7953491210938	2	557.326402	1112.63825	-0.53894	-0.00030037	4.2089	0.0023457	3.6699	0.0020453	557.3293618054024	114.67	1.1848	113.61	113.21	114.39	-1.055					66	23	4	0	0	0	0.027462	1	8514	8514		49.442	0	1	102050			23466	13755	19174	19197	26154	26154					0.0864380061632346
KILCEEMGAQ	10	Unmodified	_KILCEEMGAQ_					0	0	0		ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.794189453125	2	561.270109	1120.52567	0.022023	1.2361E-05	-0.49067	-0.0002754	-0.46864	-0.00026304	561.2692037821985	40.177	0.41859	40.177	40.06	40.479	0					11	8	2	0	0	0	0.026968	1	2450	2450		36.447	15.5	1	150650			23467	9312	19175	19198	26155	26155					-0.02977584234349706
KILDEATTTGG	11	Unmodified	_KILDEATTTGG_					0	0	0			REV__tr|A0A553SGA1|A0A553SGA1_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_10460PE=3SV=1	REV__tr|A0A553SGA1|A0A553SGA1_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_10460PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.3051147460938	2	553.290411	1104.56627	-0.031507	-1.7432E-05	0.25049	0.00013859	0.21898	0.00012116	553.2907067670121	58.818	1.1983	55.426	54.902	56.1	-3.392					30	23	2	0	0	0	0.025864	1	3962	3962		32.751	12.754	1	66032	+		23468	29675	19176	19199	26156	26156					0.018167966812598024
KILDEATTTGG	11	Unmodified	_KILDEATTTGG_					0	0	0			REV__tr|A0A553SGA1|A0A553SGA1_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_10460PE=3SV=1	REV__tr|A0A553SGA1|A0A553SGA1_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_10460PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	553.290411	1104.56627	0.2382	0.00013179	-0.004346	-2.4046E-06	0.23386	0.00012939	553.7914560264081	58.318	0.65518	55.532	55.028	55.684	-2.7859	0.053219	-0.00021767	NaN	30.569	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12419	+		23469	29675	19176	19199							0.018167966812598024
KILDKKRF	8	Unmodified	_KILDKKRF_					0	0	0			REV__nc|ENSG00000076555|O00763-3|ACACB	REV__nc|ENSG00000076555|O00763-3|ACACB	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.317138671875	2	524.337301	1046.66005	-0.7719	-0.00040474	0.41004	0.000215	-0.36186	-0.00018974	524.3376290471945	40.502	0.23244	40.502	40.34	40.573	0					5	4	2	0	0	0	0.028476	1	2452	2452		57.811	6.4758	1	25697	+		23470	16994	19177	19200	26157	26157					0.1385860536488508
KILDKRNK	8	Unmodified	_KILDKRNK_					0	0	0			REV__nc|ENSG00000072756|Q96Q11-2|TRNT1	REV__nc|ENSG00000072756|Q96Q11-2|TRNT1	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.81500244140625	2	507.824558	1013.63456	-0.74619	-0.00037894	1.5119	0.00076778	0.76571	0.00038885	507.82542110644425	74.232	0.89026	72.26	71.957	72.847	-1.9711					21	16	2	0	0	0	0.028476	1	6123	6123		34.173	0	1	37997	+		23471	16921	19178	19201	26158	26158					0.1282913084246502
KILDKRNK	8	Unmodified	_KILDKRNK_					0	0	0			REV__nc|ENSG00000072756|Q96Q11-2|TRNT1	REV__nc|ENSG00000072756|Q96Q11-2|TRNT1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.81646728515625	2	507.824558	1013.63456	-0.12424	-6.3092E-05	-0.15612	-7.9283E-05	-0.28036	-0.00014237	507.8245975749092	75.575	0.6309	72.636	72.449	73.08	-2.9389					21	12	2	0	0	0	0.028476	1	5995	5995		40.778	3.6191	1	39423	+		23472	16921	19178	19201	26159	26159					0.1282913084246502
KILDYEVTL	9	Unmodified	_KILDYEVTL_					0	0	0		ENST00000506241.1_1_5:55251841-55256299:-|nuORF;ENST00000503773.6_1_5:55236912-55256289:-|nuORF;nc|ENSG00000134352|P40189-3|IL6ST;ENSG00000134352|ENST00000381298|IL6ST	ENST00000506241.1_1_5:55251841-55256299:-|nuORF	ENST00000506241.1_1_5:55251841-55256299:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	547.3134765625	2	547.310615	1092.60668	1.8897	0.0010342	-0.2105	-0.00011521	1.6792	0.00091904	547.3105382944152	110.37	0.62582	110.37	110.13	110.76	0					28	13	4	0	0	0	0.38807	1	12534	12534		53.089	1.8963	1	1553600			23473	4289	19179	19202	26160	26160					0.0640776307170654
KILDYEVTL	9	Unmodified	_KILDYEVTL_					0	0	0		ENST00000506241.1_1_5:55251841-55256299:-|nuORF;ENST00000503773.6_1_5:55236912-55256289:-|nuORF;nc|ENSG00000134352|P40189-3|IL6ST;ENSG00000134352|ENST00000381298|IL6ST	ENST00000506241.1_1_5:55251841-55256299:-|nuORF	ENST00000506241.1_1_5:55251841-55256299:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.3103637695312	2	547.310615	1092.60668	-0.08112	-4.4398E-05	-0.77435	-0.00042381	-0.85547	-0.00046821	547.3100262915397	112.23	1.4754	110.72	110.26	111.74	-1.5111					81	28	4	0	0	0	0.42576	1	10379	10379		49.536	3.5841	1	212230			23474	4289	19179	19202	26161	26161					0.0640776307170654
KILEDVVGV	9	Unmodified	_KILEDVVGV_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	OvCa99_classI_Rep5	1	486.2931823730469	2	486.292225	970.569897	1.9193	0.00093333	0.56997	0.00027717	2.4893	0.0012105	486.2923209509544	96.77	0.59099	96.77	96.459	97.05	0					28	13	3	0	0	0	0.3076	1	10628	10628		62.107	3.3255	1	1610000			23475	1789	19180	19203	26162	26162					0.08343511245811897
KILEDVVGV	9	Unmodified	_KILEDVVGV_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	OvCa9_classI_Rep3	3	486.2909851074219	2	486.292225	970.569897	-1.018	-0.00049506	-0.024829	-1.2074E-05	-1.0429	-0.00050714	486.29220747093495	99.959	1.4451	98.274	97.373	98.818	-1.685					60	28	4	0	0	0	0.48047	1	6764	6764		44.377	1.981	1	272520			23476	1789	19180	19203	26163	26163					0.08343511245811897
KILEKYSVGL	10	Unmodified	_KILEKYSVGL_					0	0	0			REV__ENSG00000181215|ENST00000531445|C4orf50	REV__ENSG00000181215|ENST00000531445|C4orf50	MULTI-MSMS	OvCa9_classI_Rep2	2	575.3450927734375	2	575.347532	1148.68051	-4.8722	-0.0028032	1.3843	0.00079645	-3.488	-0.0020068	575.3482857575835	154.87	1.1278	154.64	154.34	155.47	-0.22696					59	30	3	0	0	0	0.79917	1	15763	15763		19.104	1.6355	1	84487	+		23477	22221	19181	19204	26164	26164					0.11211731234061517
KILEYMSIPK	10	Unmodified	_KILEYMSIPK_					0	0	0			REV__tr|A0A7D6ZQE2|A0A7D6ZQE2_9CLOTtRNAuridine5-carboxymethylaminomethylmodificationenzymeMnmGOS=ClostridiumintestinaleOX=36845GN=mnmGPE=3SV=1	REV__tr|A0A7D6ZQE2|A0A7D6ZQE2_9CLOTtRNAuridine5-carboxymethylaminomethylmodificationenzymeMnmGOS=ClostridiumintestinaleOX=36845GN=mnmGPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3497314453125	2	611.349217	1220.68388	2.8968	0.0017709	0.056018	3.4247E-05	2.9528	0.0018052	611.3491630908582	125.96	1.25	124.91	124.58	125.83	-1.0525					67	23	4	0	0	0	0.74374	1	9852	9852		25.574	1.0549	1	429160	+		23478	32147	19182	19205	26165	26165					0.08236658016380716
KILFDGLQL	9	Unmodified	_KILFDGLQL_					0	0	0			REV__ENST00000510104.5_1_5:140071123-140075505:+|nuORF	REV__ENST00000510104.5_1_5:140071123-140075505:+|nuORF	MSMS	OvCa9_classI_Rep3	3	523.8154907226562	2	523.815867	1045.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.14	1	122.1	121.6	122.6	-1.0377								0	0	0	0.12679	1	9492	9492		67.494	0	1		+		23479	18123	19183	19206	26166	26166					0.0961979051680828
KILFIQVVD	9	Unmodified	_KILFIQVVD_					0	0	0		ENST00000490921.5_1_1:226549163-226553858:-|nuORF	ENST00000490921.5_1_1:226549163-226553858:-|nuORF	ENST00000490921.5_1_1:226549163-226553858:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	538.826416015625	2	537.831517	1073.64848	-0.41643	-0.00022397	3.0128	0.0016204	2.5964	0.0013964	537.8330477732237	92.588	0.97623	91.42	91.129	92.105	-1.168					35	18	2	0	0	0	0.027462	1	8207	8207		31.53	0	1	289580			23480	12707	19184	19207	26167	26167					0.11460363550895636
KILFLPRNL	9	Unmodified	_KILFLPRNL_					0	0	0		ENST00000261168.8_1_12:14654270-14654414:+|nuORF	ENST00000261168.8_1_12:14654270-14654414:+|nuORF	ENST00000261168.8_1_12:14654270-14654414:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.8432006835938	2	557.360776	1112.707	-0.29083	-0.0001621	-4.016	-0.0022384	-4.3069	-0.0024005	557.3586279062449	28.952	0.29855	28.952	28.789	29.087	0					8	5	2	0	0	0	0.027462	1	983	983		24.203	5.9407	1	32230			23481	9856	19185	19208	26168	26168					0.15515464916029487
KILGKSLLELL	11	Unmodified	_KILGKSLLELL_					0	0	0			REV__ENST00000392902.2_1_9:125791658-125791787:-|nuORF	REV__ENST00000392902.2_1_9:125791658-125791787:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	409.6079406738281	3	409.607596	1225.80096	0.55097	0.00022568	0.25775	0.00010558	0.80871	0.00033125	409.60762934156605	108.64	8.1164	106.92	106.42	114.53	-1.7256					461	158	5	0	0	0	0.67712	1	10065	10065		37.508	2.3561	1	863570	+		23482	25271	19186	19209	26169	26169					0.19709139227666128
KILGQAIIRA	10	Unmodified	_KILGQAIIRA_					0	0	0			REV__nc|ENSG00000131059|Q9BQP9-2|BPIFA3	REV__nc|ENSG00000131059|Q9BQP9-2|BPIFA3	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.77734375	2	541.855858	1081.69716	1.7504	0.00094849	-0.10827	-5.8665E-05	1.6422	0.00088982	541.8556641936145	79.491	0.71152	79.491	79.276	79.987	0					25	17	2	0	0	0	0.026688	1	8100	8100		32.812	1.2826	1	986680	+		23483	18995	19187	19210	26170	26170					0.15958276910646418
KILIAKEAEK	10	Unmodified	_KILIAKEAEK_					0	0	0			REV__tr|A0A553SJL9|A0A553SJL9_NIACIDUF2225domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16825PE=4SV=1	REV__tr|A0A553SJL9|A0A553SJL9_NIACIDUF2225domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16825PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.8233032226562	2	571.860806	1141.70706	-0.039097	-2.2358E-05	1.7425	0.00099646	1.7034	0.0009741	571.8617796272462	73.657	0.1174	73.657	73.56	73.678	0					4	2	2	0	0	0	0.02706	1	7234	7234		17.468	0.10304	1	198080	+		23484	30016	19188	19211	26171	26171					0.14187420125358585
KILIASAKF	9	Unmodified	_KILIASAKF_					0	0	0			REV__tr|A0A553SMJ4|A0A553SMJ4_NIACIPeptidaseM20domain-containingprotein2OS=NialliacirculansOX=1397GN=CEQ21_22730PE=3SV=1	REV__tr|A0A553SMJ4|A0A553SMJ4_NIACIPeptidaseM20domain-containingprotein2OS=NialliacirculansOX=1397GN=CEQ21_22730PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.27081298828125	2	495.820953	989.627353	2.2924	0.0011366	0.91185	0.00045211	3.2043	0.0015887	495.8210621085373	76.026	0.32516	76.026	75.874	76.199	0					11	7	2	0	0	0	0.027462	1	7615	7615		44.117	12.162	1	248780	+		23485	30337	19189	19212	26172	26172					0.13212398242035306
KILIVGGGVAG	11	Unmodified	_KILIVGGGVAG_					0	0	0		ENSG00000112992|ENST00000344920|NNT;SUMF1-NNT|1|fusion;SUMF1-NNT|2|fusion;NNT-NIM1|1|fusion	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.7650451660156	2	492.316035	982.617516	1.7855	0.00087902	0.40456	0.00019917	2.19	0.0010782	492.31611734101074	92.565	0.79386	92.565	92.174	92.968	0					22	18	2	0	0	0	0.025449	1	9992	9992		38.806	22.333	1	230610			23486	2942	19190	19213	26173	26173					0.1255121023666561
KILKEKNKSS	10	Unmodified	_KILKEKNKSS_					0	0	0			REV__ENSG00000171320|ENST00000305188|ESCO2	REV__ENSG00000171320|ENST00000305188|ESCO2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	587.8355102539062	2	587.861338	1173.70812	-1.1794	-0.00069335	0.85262	0.00050122	-0.32683	-0.00019213	587.8625355128532	53.665	0.45867	50.418	50.109	50.568	-3.2474					13	8	2	0	0	0	0.027118	1	3265	3265		13.454	0	1	14794	+		23487	21609	19191	19214	26174	26174					0.12821634494275713
KILKIKPRP	9	Unmodified	_KILKIKPRP_					0	0	0			REV__ENSG00000153201|ENST00000283195|RANBP2	REV__ENSG00000153201|ENST00000283195|RANBP2	MULTI-SECPEP	OvCa9_classI_Rep2	2	546.8114624023438	2	546.884419	1091.75428	-0.41316	-0.00022595	1.7691	0.00096749	1.3559	0.00074153	546.8847320985449	77.334	0.36351	75.545	75.311	75.675	-1.7894					9	6	2	0	0	0	0.027462	1	6406	6406		24.203	12.692	1	7600.9	+		23488	20326	19192	19215	26175	26175					0.2120774418704059
KILKNRLKA	9	Unmodified	_KILKNRLKA_					0	0	0		tr|A0A7D6ZGM5|A0A7D6ZGM5_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19440PE=4SV=1	tr|A0A7D6ZGM5|A0A7D6ZGM5_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19440PE=4SV=1	tr|A0A7D6ZGM5|A0A7D6ZGM5_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19440PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	542.3716430664062	2	542.371675	1082.7288	0.093673	5.0806E-05	-0.44981	-0.00024396	-0.35614	-0.00019316	542.3713013214245	41.12	2.1196	38.411	38.093	40.213	-2.7097					118	42	4	0	0	0	0.48324	1	2167	2167		44.117	6.9577	1	313610			23489	35548	19193	19216	26176	26176					0.19074269664611165
KILLKEYLDS	10	Unmodified	_KILLKEYLDS_					0	0	0			REV__nc|ENSG00000109762|Q9H3E2|SNX25	REV__nc|ENSG00000109762|Q9H3E2|SNX25	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3541870117188	2	611.358096	1220.70164	-2.725	-0.001666	-0.73961	-0.00045217	-3.4646	-0.0021181	611.3575283211214	150.83	4.6872	149.39	148.02	152.71	-1.4344					404	109	6	0	0	0	0.78463	1	15082	15082		20.947	0	1	435030	+		23490	17948	19194	19217	26177	26177					0.10011696542892423
KILLKGKKL	9	Unmodified	_KILLKGKKL_					0	0	0		ENSG00000187091|ENST00000334661|PLCD1;nc|ENSG00000187091|P51178-2|PLCD1;ENST00000461445.5_1_3:38051140-38051556:-|nuORF	ENSG00000187091|ENST00000334661|PLCD1	ENSG00000187091|ENST00000334661|PLCD1	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.3101196289062	2	520.881345	1039.74814	0.43366	0.00022589	3.5678	0.0018584	4.0014	0.0020843	520.8832184226487	83.014	0.23481	81.415	81.27	81.505	-1.5988					5	4	2	0	0	0	0.027462	1	7107	7107		11.511	0	1	26524			23491	8385	19195	19218	26178	26178					0.22985225955517308
KILLRITV	8	Unmodified	_KILLRITV_					0	0	0		ENST00000362065.8_1_15:31233909-31234176:+|nuORF	ENST00000362065.8_1_15:31233909-31234176:+|nuORF	ENST00000362065.8_1_15:31233909-31234176:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.3038024902344	2	478.33677	954.658987	0.43114	0.00020623	-0.46278	-0.00022136	-0.031632	-1.5131E-05	478.33639459902355	45.314	0.553	45.314	45.114	45.667	0					22	12	3	0	0	0	0.028476	1	3106	3106		17.365	0	1	194650			23492	10814	19196	19219	26179	26179					0.17984390995968624
KILNHILKL	9	Unmodified	_KILNHILKL_					0	0	0			REV__tr|A0A7D6VTP1|A0A7D6VTP1_9CLOTRibonucleaseJOS=ClostridiumintestinaleOX=36845GN=rnjPE=3SV=1	REV__tr|A0A7D6VTP1|A0A7D6VTP1_9CLOTRibonucleaseJOS=ClostridiumintestinaleOX=36845GN=rnjPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	545.8292846679688	2	546.368601	1090.72265	-1.049	-0.00057315	-0.73319	-0.00040059	-1.7822	-0.00097374	546.3693002570772	97.035	0.35986	95.206	95.088	95.448	-1.8286					8	6	2	0	0	0	0.027462	1	6412	6412		17.365	0	1	9200.2	+		23493	31619	19197	19220	26180	26180					0.18091751433075842
KILNNATVY	9	Unmodified	_KILNNATVY_					0	0	0			REV__tr|A0A7D6VRE0|A0A7D6VRE0_9CLOTRNA-bindingtranscriptionalaccessoryproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19060PE=4SV=1	REV__tr|A0A7D6VRE0|A0A7D6VRE0_9CLOTRNA-bindingtranscriptionalaccessoryproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19060PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.8118286132812	2	518.295299	1034.57605	0.42245	0.00021895	-3.705	-0.0019203	-3.2826	-0.0017013	518.2922274877853	110.8	0.73607	109.2	108.91	109.65	-1.6011					20	13	2	0	0	0	0.027455	1	10192	10192		26.693	0	1	33970	+		23494	31407	19198	19221	26181	26181					0.06014029477319127
KILNRVHNT	9	Unmodified	_KILNRVHNT_					0	0	0			REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.8258056640625	2	547.825089	1093.63563	-0.32802	-0.0001797	-0.19373	-0.00010613	-0.52176	-0.00028583	547.824898906818	57.81	1.3606	54.465	54.138	55.498	-3.3449					54	26	3	0	0	0	0.62352	1	3767	3767		29.15	0	1	531360	+		23495	21336	19199	19222	26182	26182					0.0925534521136342
KILNRVHNT	9	Unmodified	_KILNRVHNT_					0	0	0			REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	547.825089	1093.63563	-0.55758	-0.00030546	-0.019955	-1.0932E-05	-0.57754	-0.00031639	547.8250068427734	57.11	1.1908	54.318	53.881	55.072	-2.792	-0.073829	0.00010468	NaN	29.15	45	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148190	+		23496	21336	19199	19222							0.0925534521136342
KILNTITLL	9	Unmodified	_KILNTITLL_					0	0	0		tr|A0A7D6VRI1|A0A7D6VRI1_9CLOTHistidineproteinkinaseSaeSOS=ClostridiumintestinaleOX=36845GN=HZF06_00955PE=4SV=1	tr|A0A7D6VRI1|A0A7D6VRI1_9CLOTHistidineproteinkinaseSaeSOS=ClostridiumintestinaleOX=36845GN=HZF06_00955PE=4SV=1	tr|A0A7D6VRI1|A0A7D6VRI1_9CLOTHistidineproteinkinaseSaeSOS=ClostridiumintestinaleOX=36845GN=HZF06_00955PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.2838134765625	2	514.839342	1027.66413	1.7728	0.00091273	0.08505	4.3787E-05	1.8579	0.00095652	514.8392161604174	82.002	0.57491	82.002	81.776	82.351	0					30	13	3	0	0	0	0.02744	1	8479	8479		62.107	1.9892	1	1084500			23497	34934	19200	19223	26183	26183					0.15140650067951356
KILPTLEAV	9	Unmodified	_KILPTLEAV_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-MSMS	OvCa99_classI_Rep5	1	492.3121032714844	2	492.310418	982.606283	2.5499	0.0012553	-0.75167	-0.00037006	1.7982	0.00088529	492.30990653750496	100.78	0.95372	100.78	100.49	101.44	0					64	22	4	0	0	0	0.070405	1	11165	11165		107.01	27.295	1	10465000			23498	5077	19201	19224	26184	26184					0.11428388142519452
KILPTLEAV	9	Unmodified	_KILPTLEAV_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-MSMS	OvCa9_classI_Rep2	2	492.3095703125	2	492.310418	982.606283	-0.45983	-0.00022638	0.8076	0.00039759	0.34776	0.00017121	492.31038804018607	102.28	1.8782	101.6	100.84	102.72	-0.68459					104	37	5	0	0	0	0.1944	3	9412	9402;9406;9412		77.318	18.526	1	571820			23499	5077	19201	19224	26185;26186;26187	26187					0.11428388142519452
KILPTLEAV	9	Unmodified	_KILPTLEAV_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-MSMS	OvCa9_classI_Rep3	3	492.3116760253906	2	492.310418	982.606283	-0.24703	-0.00012162	0.23088	0.00011366	-0.016155	-7.9533E-06	492.3101656856302	103.29	2.0899	101.86	101.5	103.59	-1.4347					105	39	5	0	0	0	0.2422	1	7148	7148		69.628	0	1	629420			23500	5077	19201	19224	26188	26188					0.11428388142519452
KILPTLEAV	9	Unmodified	_KILPTLEAV_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.30975341796875	2	492.310418	982.606283	-0.222	-0.00010929	0.62775	0.00030905	0.40575	0.00019975	492.31029247924175	103.97	2.5731	101.85	101.07	103.64	-2.1192					124	49	5	0	0	0	0.10502	1	9398	9398		95.815	13.065	1	611980			23501	5077	19201	19224	26189	26189					0.11428388142519452
KILQKRFM	8	Unmodified	_KILQKRFM_					0	0	0		ENST00000501173.6_1_5:127302595-127398182:-|nuORF;ENST00000514573.5_1_5:127302595-127398103:-|nuORF;ENST00000501652.5_1_5:127302595-127417754:-|nuORF;ENST00000508878.5_1_5:127359968-127417754:-|nuORF	ENST00000501173.6_1_5:127302595-127398182:-|nuORF	ENST00000501173.6_1_5:127302595-127398182:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	533.2722778320312	2	532.325879	1062.63721	-0.068995	-3.6728E-05	-1.755	-0.00093423	-1.824	-0.00097096	532.8265268424533	89.307	0.9561	87.176	86.895	87.851	-2.1309					24	18	2	0	0	0	0.028476	1	5450	5450		25.45	0	1	35384			23502	12842	19202	19225	26190	26190					0.10839262975764541
KILRILPE	8	Unmodified	_KILRILPE_					0	0	0		tr|A0A7D6W244|A0A7D6W244_9CLOT1-acyl-sn-glycerol-3-phosphateacyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05075PE=4SV=1	tr|A0A7D6W244|A0A7D6W244_9CLOT1-acyl-sn-glycerol-3-phosphateacyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05075PE=4SV=1	tr|A0A7D6W244|A0A7D6W244_9CLOT1-acyl-sn-glycerol-3-phosphateacyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05075PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	492.3046875	2	491.326402	980.638252	1.3529	0.00066473	-2.368	-0.0011634	-1.015	-0.00049871	491.32543181877867	112.66	0.78828	111.58	111.17	111.96	-1.0753					31	15	3	0	0	0	0.028476	1	8220	8220		51.335	7.2187	1	27925			23503	35421	19203	19226	26191	26191					0.14715800616329489
KILRILPE	8	Unmodified	_KILRILPE_					0	0	0		tr|A0A7D6W244|A0A7D6W244_9CLOT1-acyl-sn-glycerol-3-phosphateacyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05075PE=4SV=1	tr|A0A7D6W244|A0A7D6W244_9CLOT1-acyl-sn-glycerol-3-phosphateacyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05075PE=4SV=1	tr|A0A7D6W244|A0A7D6W244_9CLOT1-acyl-sn-glycerol-3-phosphateacyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05075PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.3067321777344	2	491.326402	980.638252	0.61229	0.00030083	-1.0721	-0.00052676	-0.45983	-0.00022593	491.3258951818814	112.99	0.93903	111.54	111.16	112.1	-1.4461					34	18	3	0	0	0	0.028476	1	10438	10438		49.442	7.0454	1	40785			23504	35421	19203	19226	26192	26192					0.14715800616329489
KILRLGGIAY	10	Unmodified	_KILRLGGIAY_					0	0	0		nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	nc|ENSG00000174953|Q9H2U1-3|DHX36	nc|ENSG00000174953|Q9H2U1-3|DHX36	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.3511352539062	2	552.350409	1102.68626	-0.18484	-0.0001021	-0.059877	-3.3073E-05	-0.24472	-0.00013517	552.350232386143	90.822	2.09	88.247	87.75	89.84	-2.575					100	40	4	0	0	0	0.58282	1	7864	7864		44.117	3.3386	1	320710			23505	7503	19204	19227	26193	26193					0.1390287453637029
KILRMTESPRR	11	Unmodified	_KILRMTESPRR_					0	0	0		ENST00000571684.5_1_17:707007-722756:-|nuORF	ENST00000571684.5_1_17:707007-722756:-|nuORF	ENST00000571684.5_1_17:707007-722756:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.938232421875	3	462.938122	1385.79254	-1.4875	-0.00068863	-1.7782	-0.0008232	-3.2657	-0.0015118	462.9373949501134	44.694	4.8335	41.655	41.207	46.04	-3.0385					274	93	6	0	0	0	0.68709	1	2212	2212		34.087	7.3368	1	4600900			23506	13903	19205	19228	26194	26194					0.1150726203936756
KILRNKAKI	9	Unmodified	_KILRNKAKI_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.3710327148438	2	542.371675	1082.7288	-1.4996	-0.00081332	0.88982	0.00048261	-0.60975	-0.00033071	542.3720392957932	41.042	2.065	38.088	37.789	39.854	-2.9541					109	39	4	0	0	0	0.36502	1	1835	1835		55.504	0	1	370520			23507	9513	19206	19229	26195	26195					0.19074269664611165
KILRQLAVQLK	11	Unmodified	_KILRQLAVQLK_					0	0	0			REV__ENST00000480395.5_1_11:5717822-5718591:+|nuORF	REV__ENST00000480395.5_1_11:5717822-5718591:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	437.2953186035156	3	437.294123	1308.86054	3.4716	0.0015181	-1.4639	-0.00064015	2.0077	0.00087795	437.2934187141882	75.3	0.43597	75.3	75.087	75.523	0					32	10	5	0	0	0	0.67685	1	7481	7481		37.6	9.956	1	2571400	+		23508	19063	19207	19230	26196	26196					0.21846454961701056
KILRQQLVD	9	Unmodified	_KILRQQLVD_					0	0	0			REV__ENSG00000126602|ENST00000246957|TRAP1	REV__ENSG00000126602|ENST00000246957|TRAP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.2991943359375	2	556.842948	1111.67134	2.4102	0.0013421	-0.49391	-0.00027503	1.9163	0.0010671	556.8426083290151	78.294	0.5723	78.294	78.053	78.625	0					30	13	3	0	0	0	0.027461	1	7934	7934		32.812	0	1	802140	+		23509	18790	19208	19231	26197	26197					0.11997382668391765
KILSEEPRW	9	Unmodified	_KILSEEPRW_					0	0	0		ENSG00000132478|ENST00000589666|UNK;UNK|p.L382Pfs*48|1|0.06|ENSG00000132478|chr17:75817366-75817366|T/-|frameshift_variant	ENSG00000132478|ENST00000589666|UNK	ENSG00000132478|ENST00000589666|UNK	MULTI-MSMS	OvCa9_classI_Rep2	2	579.322509765625	2	579.319306	1156.62406	2.6185	0.0015169	3.5123	0.0020347	6.1308	0.0035517	579.3212562959395	26.202	0.67894	23.493	23.343	24.022	-2.7097					37	15	3	0	0	0	0.68424	1	360	360		21.96	4.5949	1	118080			23510	4141	19209	19232	26198	26198					0.05201103397371298
KILSFVFGR	9	Unmodified	_KILSFVFGR_					0	0	0			REV__nc|ENSG00000116641|Q96N67-4|DOCK7	REV__nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.7772216796875	2	533.824027	1065.6335	-1.5499	-0.00082738	-2.7531	-0.0014696	-4.303	-0.002297	533.8224328543496	75.605	0.5634	73.751	73.586	74.149	-1.854					14	10	2	0	0	0	0.027462	1	6243	6243		24.519	3.5723	1	22738	+		23511	18308	19210	19233	26199	26199					0.1033091647357196
KILSRVYEL	9	Unmodified	_KILSRVYEL_					0	0	0		ENSG00000237765|ENST00000422728|FAM200B	ENSG00000237765|ENST00000422728|FAM200B	ENSG00000237765|ENST00000422728|FAM200B	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.794189453125	2	560.839874	1119.66519	0.068933	3.866E-05	-2.7553	-0.0015453	-2.6864	-0.0015066	560.838185011803	40.313	0.513	40.313	40.106	40.619	0					19	10	3	0	0	0	0.027462	1	2450	2450		24.203	1.1603	1	229100			23512	9320	19211	19234	26200	26200					0.11014864436833705
KILTILGLN	9	Unmodified	_KILTILGLN_					0	0	0			REV__ENSG00000279961|ENST00000623286|OR8U3	REV__ENSG00000279961|ENST00000623286|OR8U3	MULTI-SECPEP	OvCa9_classI_Rep3	3	492.28863525390625	2	492.826235	983.637917	1.0446	0.00051481	-1.6485	-0.00081244	-0.60392	-0.00029763	492.8254535697018	113.01	0.74168	111.93	111.66	112.4	-1.0753					23	14	2	0	0	0	0.027462	1	8263	8263		32.812	0	1	42536	+		23513	23656	19212	19235	26201	26201					0.14544380896450093
KILYSFFFF	9	Unmodified	_KILYSFFFF_					0	0	0		ENST00000221419.9_1_19:39327147-39327285:-|nuORF	ENST00000221419.9_1_19:39327147-39327285:-|nuORF	ENST00000221419.9_1_19:39327147-39327285:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.2284240722656	3	404.554833	1210.64267	1.4767	0.0005974	1.3865	0.00056091	2.8631	0.0011583	404.55536414061874	62.906	0.47762	62.906	62.741	63.219	0					18	11	2	0	0	0	0.027462	1	5604	5604		13.454	0	1	351460			23514	9691	19213	19236	26202	26202					0.045772650392109426
KIMAAAYLDP	10	Unmodified	_KIMAAAYLDP_					0	0	0		ENST00000523675.1_1_8:141900602-141931054:-|nuORF	ENST00000523675.1_1_8:141900602-141931054:-|nuORF	ENST00000523675.1_1_8:141900602-141931054:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	546.3199462890625	2	546.791535	1091.56852	-2.6398	-0.0014434	2.9219	0.0015977	0.28213	0.00015427	546.7929749142701	140.82	0.93175	139.79	139.38	140.31	-1.0339					22	18	2	0	0	0	0.026956	1	11624	11624		42.396	10.441	1	14995			23515	13151	19214	19237	26203	26203					0.026395538853876133
KIMAAAYLDP	10	Unmodified	_KIMAAAYLDP_					0	0	0		ENST00000523675.1_1_8:141900602-141931054:-|nuORF	ENST00000523675.1_1_8:141900602-141931054:-|nuORF	ENST00000523675.1_1_8:141900602-141931054:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	546.791535	1091.56852	-1.1439	-0.00062546	3.061	0.0016737	1.9171	0.0010483	547.2948709130354	140.31	0.24471	140.09	139.94	140.19	-0.22697	0.14949	7.9448E-05	NaN	34.173	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16233			23516	13151	19214	19237							0.026395538853876133
KIMGKATTRLF	11	Unmodified	_KIMGKATTRLF_					0	0	0		tr|A0A7D6VV20|A0A7D6VV20_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22700PE=4SV=1	tr|A0A7D6VV20|A0A7D6VV20_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22700PE=4SV=1	tr|A0A7D6VV20|A0A7D6VV20_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22700PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.3626098632812	2	633.373558	1264.73256	-2.6571	-0.001683	-4.3264	-0.0027402	-6.9835	-0.0044232	633.3706685096566	150.42	2.9234	148.98	147.78	150.7	-1.4344					195	63	4	0	0	0	0.7246	1	14934	14934		20.837	1.7336	1	147740			23517	35209	19215	19238	26204	26204					0.11078571376106083
KINEILQPI	9	Unmodified	_KINEILQPI_					0	0	0			REV__tr|A0A7D6ZWS5|A0A7D6ZWS5_9CLOTElectrontransferflavoproteinsubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_19085PE=3SV=1	REV__tr|A0A7D6ZWS5|A0A7D6ZWS5_9CLOTElectrontransferflavoproteinsubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_19085PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	534.3262939453125	2	534.326599	1066.63865	-0.33532	-0.00017917	0.11603	6.1997E-05	-0.2193	-0.00011718	534.3264880015334	42.731	0.64738	42.731	42.496	43.143	0					31	14	4	0	0	0	0.13504	1	2767	2767		87.696	7.2418	1	645330	+		23518	32300	19216	19239	26205	26205					0.10799175545503203
KINEKRKEE	9	Unmodified	_KINEKRKEE_					0	0	0		ENSG00000164114|ENST00000311277|MAP9	ENSG00000164114|ENST00000311277|MAP9	ENSG00000164114|ENST00000311277|MAP9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	586.3364868164062	2	587.332944	1172.65134	-0.7432	-0.00043651	0.56002	0.00032892	-0.18318	-0.00010759	587.3331280363892	39.945	0.59788	36.991	36.665	37.263	-2.9541					21	11	3	0	0	0	0.027462	1	1708	1708		27.882	0	1	75780			23519	6413	19217	19240	26206	26206					0.07191586937778993
KINENLKPE	9	Unmodified	_KINENLKPE_					0	0	0			REV__ENST00000424137.2_1_20:34340744-34341539:+|nuORF	REV__ENST00000424137.2_1_20:34340744-34341539:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.3712768554688	2	542.803488	1083.59242	-1.4336	-0.00077819	1.1903	0.00064608	-0.24337	-0.0001321	542.8043262381013	40.906	0.67681	37.952	37.685	38.362	-2.9541					26	12	3	0	0	0	0.027017	1	1811	1811		71.877	9.7701	1	19629	+		23520	22931	19218	19241	26207	26207					0.053971106434119065
KINETLKL	8	Unmodified	_KINETLKL_					0	0	0		ENSG00000197702|ENST00000334956|PARVA;ENST00000533345.5_1_11:12419899-12534890:+|nuORF	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.2890930175781	2	479.800217	957.585882	0.11468	5.5022E-05	-0.17097	-8.2032E-05	-0.056295	-2.701E-05	479.80007519242906	67.466	0.38419	67.466	67.298	67.683	0					21	9	3	0	0	0	0.028476	1	6314	6314		39.253	18.306	1	1036600			23521	8737	19219	19242	26208	26208					0.1053921748269886
KINETLKL	8	Unmodified	_KINETLKL_					0	0	0		ENSG00000197702|ENST00000334956|PARVA;ENST00000533345.5_1_11:12419899-12534890:+|nuORF	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	MULTI-MATCH	OvCa9_classI_Rep2	2		2	479.800217	957.585882	-0.31092	-0.00014918	0.48496	0.00023268	0.17404	8.3504E-05	479.8002763555745	70.069	0.5531	67.499	67.262	67.815	-2.5707	-0.043944	0.0002726	NaN	31.53	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16696			23522	8737	19219	19242							0.1053921748269886
KINETLKL	8	Unmodified	_KINETLKL_					0	0	0		ENSG00000197702|ENST00000334956|PARVA;ENST00000533345.5_1_11:12419899-12534890:+|nuORF	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	479.800217	957.585882	-0.71026	-0.00034078	1.093	0.00052443	0.38275	0.00018364	479.80056624594306	71.12	0.3439	67.663	67.58	67.924	-3.4563	0.12071	0.00085608	NaN	31.53	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18899			23523	8737	19219	19242							0.1053921748269886
KINGKSKLI	9	Unmodified	_KINGKSKLI_					0	0	0			REV__tr|A0A7D7A617|A0A7D7A617_9CLOT4Fe-4SbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08470PE=4SV=1	REV__tr|A0A7D7A617|A0A7D7A617_9CLOT4Fe-4SbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08470PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.7242126464844	2	500.829309	999.644065	0.24325	0.00012183	0.1566	7.8431E-05	0.39986	0.00020026	500.8289693287688	71.918	0.33707	71.918	71.749	72.086	0					11	7	2	0	0	0	0.027455	1	6961	6961		26.693	0	1	330010	+		23524	32648	19220	19243	26209	26209					0.1442289912798742
KINIDQALPTQ	11	Unmodified	_KINIDQALPTQ_					0	0	0			REV__ENSG00000161021|ENST00000292599|MAML1	REV__ENSG00000161021|ENST00000292599|MAML1	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.2102966308594	3	414.23471	1239.6823	0.46377	0.00019211	3.0872	0.0012788	3.5509	0.0014709	414.2358898744531	47.733	0.43273	47.733	47.551	47.984	0					15	9	2	0	0	0	0.025819	1	3461	3461		20.315	0	1	290870	+		23525	20687	19221	19244	26210	26210					0.07204740251972908
KINISQVIAVV	11	Unmodified	_KINISQVIAVV_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	OvCa9_classI_Rep4_	4	592.3729858398438	2	592.374081	1182.73361	-4.4138	-0.0026146	1.0011	0.00059302	-3.4127	-0.0020216	592.3745667748314	155.34	1.3333	153.85	153.54	154.88	-1.4911					97	38	4	0	0	0	0.69455	1	15370	15370		31.53	14.062	1	262760			23526	7923	19222	19245	26211	26211					0.149551090166824
KINKKRIAL	9	Unmodified	_KINKKRIAL_					0	0	0		ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	OvCa9_classI_Rep2	2	542.3719482421875	2	542.371675	1082.7288	0.093673	5.0806E-05	-0.44981	-0.00024396	-0.35614	-0.00019316	542.3713013214245	41.12	2.1196	38.411	38.093	40.213	-2.7097					118	42	4	0	0	0	0.29717	8	2153	2128;2141;2147;2153;2160;2178;2184;2190		63.306	15.717	1	313610			23527	5366	19223	19246	26212;26213;26214;26215;26216;26217;26218;26219	26215					0.19074269664588428
KINKKRIAL	9	Unmodified	_KINKKRIAL_					0	0	0		ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.3710327148438	2	542.371675	1082.7288	-1.4996	-0.00081332	0.88982	0.00048261	-0.60975	-0.00033071	542.3720392957932	41.042	2.065	38.088	37.789	39.854	-2.9541					109	39	4	0	0	0	0.31747	1	1822	1822		60.972	23.813	1	370520			23528	5366	19223	19246	26220	26220					0.19074269664588428
KINKKVMGI	9	Unmodified	_KINKKVMGI_					0	0	0		tr|A0A553SRE6|A0A553SRE6_NIACIAlkalinephosphataseOS=NialliacirculansOX=1397GN=CEQ21_00790PE=3SV=1	tr|A0A553SRE6|A0A553SRE6_NIACIAlkalinephosphataseOS=NialliacirculansOX=1397GN=CEQ21_00790PE=3SV=1	tr|A0A553SRE6|A0A553SRE6_NIACIAlkalinephosphataseOS=NialliacirculansOX=1397GN=CEQ21_00790PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.787353515625	2	515.825712	1029.63687	0.13471	6.9485E-05	-0.11097	-5.7239E-05	0.02374	1.2246E-05	515.8256273795138	78.337	0.29787	75.984	75.8	76.098	-2.3527					6	5	2	0	0	0	0.027449	1	4158	4158		50.025	2.1089	1	8314.4			23529	34253	19224	19247	26221	26221					0.12323843255899192
KINKPPLL	8	Unmodified	_KINKPPLL_					0	0	0			REV__ENSG00000156502|ENST00000359655|SUPV3L1	REV__ENSG00000156502|ENST00000359655|SUPV3L1	MULTI-MSMS	OvCa9_classI_Rep2	2	461.8065490722656	2	461.807845	921.601138	-0.8729	-0.00040311	0.86858	0.00040112	-0.0043221	-1.996E-06	461.8081100234073	60.384	1.4233	57.614	57.133	58.557	-2.7702					58	26	3	0	0	0	0.7043	1	4453	4453		42.474	1.9018	1	258950	+		23530	20482	19225	19248	26222	26222					0.13720129070554776
KINKSSVK	8	Unmodified	_KINKSSVK_					0	0	0			REV__ENSG00000134247|ENST00000393203|PTGFRN	REV__ENSG00000134247|ENST00000393203|PTGFRN	MULTI-MSMS	OvCa9_classI_Rep2	2	452.28369140625	2	452.284734	902.554916	1.4891	0.00067351	-2.0239	-0.00091536	-0.53473	-0.00024185	452.2836299597544	47.138	2.5308	44.428	43.993	46.524	-2.7097					129	50	4	0	0	0	0.66992	1	2848	2848		49.442	5.3247	1	825520	+		23531	19186	19226	19249	26223	26223					0.09974064168466157
KINKSSVK	8	Unmodified	_KINKSSVK_					0	0	0			REV__ENSG00000134247|ENST00000393203|PTGFRN	REV__ENSG00000134247|ENST00000393203|PTGFRN	MULTI-MSMS	OvCa9_classI_Rep4_	4	452.28387451171875	2	452.284734	902.554916	0.79908	0.00036141	-2.9996	-0.0013567	-2.2005	-0.00099525	452.2831496497707	47.481	2.9264	44.373	44.082	47.008	-3.1077					143	56	4	0	0	0	0.65062	1	2557	2557		53.351	9.2347	1	3311000	+		23532	19186	19226	19249	26224	26224					0.09974064168466157
KINKVTSVT	9	Unmodified	_KINKVTSVT_					0	0	0			REV__tr|A0A7D6VPK0|A0A7D6VPK0_9CLOTIg-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23315PE=3SV=1	REV__tr|A0A7D6VPK0|A0A7D6VPK0_9CLOTIg-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23315PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.3029479980469	2	495.303124	988.591695	0.85082	0.00042141	-1.0215	-0.00050596	-0.1707	-8.4549E-05	495.3024741844663	34.424	1.1524	31.636	31.399	32.551	-2.7881					53	22	4	0	0	0	0.31747	1	1041	1041		60.972	2.19	1	179270	+		23533	31253	19227	19250	26225	26225					0.09694315994374847
KINLCFPVPCK	11	Unmodified	_KINLCFPVPCK_					0	0	0			REV__nc|ENSG00000005339|Q92793-2|CREBBP;REV__ENSG00000100393|ENST00000263253|EP300	REV__nc|ENSG00000005339|Q92793-2|CREBBP	MULTI-SECPEP	OvCa9_classI_Rep3	3	631.8309936523438	2	631.343412	1260.67227	-0.225	-0.00014205	-0.53964	-0.0003407	-0.76464	-0.00048275	631.3431222001503	97.182	1.3125	95.422	95.053	96.365	-1.7595					62	25	4	0	0	0	0.02557	1	6390	6390		39.253	8.9351	1	344810	+		23534	16398;17411	19228	19251	26226	26226					0.052361377214083404
KINLDFHPI	9	Unmodified	_KINLDFHPI_					0	0	0		tr|A0A553SK73|A0A553SK73_NIACITypeIIsecretionsystemproteinGspEOS=NialliacirculansOX=1397GN=CEQ21_18335PE=3SV=1	tr|A0A553SK73|A0A553SK73_NIACITypeIIsecretionsystemproteinGspEOS=NialliacirculansOX=1397GN=CEQ21_18335PE=3SV=1	tr|A0A553SK73|A0A553SK73_NIACITypeIIsecretionsystemproteinGspEOS=NialliacirculansOX=1397GN=CEQ21_18335PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	548.813232421875	2	548.811116	1095.60768	2.2	0.0012074	-0.015992	-8.7765E-06	2.184	0.0011986	548.811080685885	106.4	0.87739	106.4	106.01	106.89	0					50	19	3	0	0	0	0.31747	1	11984	11984		60.972	0.85368	1	1111500			23535	33588	19229	19252	26227	26227					0.06370022231271832
KINNEMALRRV	11	Unmodified	_KINNEMALRRV_					0	0	0			REV__ENSG00000137992|ENST00000370132|DBT	REV__ENSG00000137992|ENST00000370132|DBT	MULTI-MSMS	OvCa99_classI_Rep5	1	448.5937194824219	3	448.590722	1342.75034	0.21352	9.5783E-05	4.3634	0.0019574	4.577	0.0020532	448.5924803359902	48.965	0.91788	48.965	48.455	49.373	0					41	20	4	0	0	0	0.60035	1	3624	3624		44.639	9.1438	1	917710	+		23536	19499	19230	19253	26228	26228					0.0926728663096128
KINNEMALRRV	11	Unmodified	_KINNEMALRRV_					0	0	0			REV__ENSG00000137992|ENST00000370132|DBT	REV__ENSG00000137992|ENST00000370132|DBT	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	448.590722	1342.75034	0.21352	9.5783E-05	4.3634	0.0019574	4.577	0.0020532	448.5924803359902	48.965	0.91788	48.965	48.455	49.373	0	0	0	NaN	44.639	41	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	917710	+		23537	19499	19230	19253							0.0926728663096128
KINPYNITI	9	Unmodified	_KINPYNITI_					0	0	0		tr|A0A7D6VXI7|A0A7D6VXI7_9CLOTDNAalkylationrepairproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08845PE=4SV=1	tr|A0A7D6VXI7|A0A7D6VXI7_9CLOTDNAalkylationrepairproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08845PE=4SV=1	tr|A0A7D6VXI7|A0A7D6VXI7_9CLOTDNAalkylationrepairproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08845PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.3116455078125	2	538.310949	1074.60735	0.37434	0.00020151	-1.2231	-0.00065839	-0.84872	-0.00045688	538.31049958104	96.975	1.3571	94.549	94.22	95.577	-2.4256					72	26	5	0	0	0	0.33652	1	8602	8602		58.782	4.0056	1	637690			23538	35284	19231	19254	26229	26229					0.0730260251141317
KINSQNQPT	9	Unmodified	_KINSQNQPT_					0	0	0		nc|ENSG00000122126|Q01968-2|OCRL;ENSG00000122126|ENST00000371113|OCRL;OCRL|p.Q733Rfs*9|1|0.13|ENSG00000122126|chrX:129587059-129587059|C/-|frameshift_variant	nc|ENSG00000122126|Q01968-2|OCRL;OCRL|p.Q733Rfs*9|1|0.13|ENSG00000122126|chrX:129587059-129587059|C/-|frameshift_variant	OCRL|p.Q733Rfs*9|1|0.13|ENSG00000122126|chrX:129587059-129587059|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.272216796875	2	515.269813	1028.52507	0.10607	5.4653E-05	3.4636	0.0017847	3.5696	0.0018393	515.2713620045929	60.283	1.387	56.853	56.407	57.794	-3.43					52	27	3	0	0	0	0.42576	1	4079	4079		49.536	5.1589	1	444840			23539	3519;15447	19232	19255	26230	26230					0.011950804324669662
KIPARLTLQ	9	Unmodified	_KIPARLTLQ_					0	0	0		nc|ENSG00000115155|Q9HC10-2|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF;nc|ENSG00000115155|Q9HC10-4|OTOF;nc|ENSG00000115155|Q9HC10-3|OTOF;ENSG00000115155|ENST00000272371|OTOF	nc|ENSG00000115155|Q9HC10-2|OTOF	nc|ENSG00000115155|Q9HC10-2|OTOF	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.776123046875	2	520.334759	1038.65496	-1.0872	-0.00056573	1.0172	0.00052927	-0.070081	-3.6465E-05	520.3350964994148	61.436	0.33648	61.436	61.289	61.626	0					13	7	2	0	0	0	0.027462	1	5438	5438		30.318	0	1	293920			23540	14974	19233	19256	26231	26231					0.13718301502285613
KIPCQRCI	8	Carbamidomethyl (C)	_KIPCQRC(Carbamidomethyl (C))I_	KIPC(0.002)QRC(0.998)I		KIPC(-27)QRC(27)I		0	1	0			REV__ENST00000372916.8_1_X:100500413-100506073:+|nuORF	REV__ENST00000372916.8_1_X:100500413-100506073:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	509.2662353515625	2	509.270247	1016.52594	-0.63147	-0.00032159	0.34339	0.00017488	-0.28808	-0.00014671	509.2703209956926	28.728	0.39873	28.728	28.539	28.937	0					12	7	2	0	0	0	0.71369	1	979	979		40.573	8.6178	2	91049	+		23541	17553	19234	19257	26232	26232	194				0.018338802761718398
KIPKKLKKP	9	Unmodified	_KIPKKLKKP_					0	0	0		ENST00000289081.7_1_9:98011544-98079973:-|nuORF	ENST00000289081.7_1_9:98011544-98079973:-|nuORF	ENST00000289081.7_1_9:98011544-98079973:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2871704101562	2	540.386794	1078.75904	-0.087931	-4.7516E-05	-0.13958	-7.5425E-05	-0.22751	-0.00012294	540.3866256550797	62.016	0.79786	62.016	61.743	62.541	0					29	18	2	0	0	0	0.027462	1	5488	5488		15.642	0	1	512020			23542	10085	19235	19258	26233	26233					0.22280628329781393
KIPLKEAVWP	10	Unmodified	_KIPLKEAVWP_					0	0	0		L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|290|1|anti-sense	L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|290|1|anti-sense	L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|290|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	591.296630859375	2	590.858067	1179.70158	0.17358	0.00010256	-2.2379	-0.0013223	-2.0643	-0.0012197	590.8565754534968	46.479	0.39161	46.479	46.284	46.676	0					12	8	2	0	0	0	0.026994	1	3278	3278		25.574	0	1	95096			23543	14678	19236	19259	26234	26234					0.11891741333556638
KIPNEKPLQ	9	Unmodified	_KIPNEKPLQ_					0	0	0			REV__ENST00000265062.7_1_3:128532272-128532644:+|nuORF	REV__ENST00000265062.7_1_3:128532272-128532644:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.7901611328125	2	533.816399	1065.61824	0.19317	0.00010312	0.16041	8.5629E-05	0.35358	0.00018875	533.8163445484578	62.507	0.28592	62.507	62.335	62.621	0					12	6	2	0	0	0	0.027411	1	5568	5568		58.23	0	1	416070	+		23544	24026	19237	19260	26235	26235					0.08806004885695984
KIPNRELLL	9	Unmodified	_KIPNRELLL_					0	0	0			REV__ENST00000489204.1_1_10:134155720-134158159:+|nuORF	REV__ENST00000489204.1_1_10:134155720-134158159:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.3447875976562	2	548.347866	1094.68118	-2.9821	-0.0016352	-1.1105	-0.00060896	-4.0927	-0.0022442	548.3471290060427	150.24	1.502	148.8	148.37	149.88	-1.4344					77	33	4	0	0	0	0.69895	1	14870	14870		18.324	2.6826	1	132530	+		23545	20127	19238	19261	26236	26236					0.13762570673748087
KIPNRIII	8	Unmodified	_KIPNRIII_					0	0	0			REV__nc|ENSG00000162775|Q96T37-3|RBM15	REV__nc|ENSG00000162775|Q96T37-3|RBM15	MULTI-MSMS	OvCa9_classI_Rep3	3	483.8263854980469	2	483.826569	965.638586	-1.0787	-0.00052189	0.69458	0.00033606	-0.3841	-0.00018584	483.826819441973	77.321	1.8681	74.969	74.681	76.549	-2.3527					107	36	4	0	0	0	0.56113	2	4045	4045;4050		71.378	8.3995	1	951630	+		23546	28963	19239	19262	26237;26238	26237					0.1543922033616809
KIPQLPSS	8	Unmodified	_KIPQLPSS_					0	0	0		ENSG00000158553|ENST00000444565|POM121L2	ENSG00000158553|ENST00000444565|POM121L2	ENSG00000158553|ENST00000444565|POM121L2	MULTI-SECPEP	OvCa9_classI_Rep2	2	434.7793884277344	2	435.258185	868.501818	-0.71676	-0.00031198	0.76908	0.00033475	0.052322	2.2774E-05	435.2583246746461	60.959	0.37385	58.189	57.976	58.35	-2.7702					9	6	2	0	0	0	0.028476	1	4494	4494		23.042	4.7181	1	7405			23547	5960	19240	19263	26239	26239					0.062306863857997996
KIPRLLLA	8	Unmodified	_KIPRLLLA_					0	0	0		ENSG00000127364|ENST00000247881|TAS2R4	ENSG00000127364|ENST00000247881|TAS2R4	ENSG00000127364|ENST00000247881|TAS2R4	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.3252258300781	2	462.323663	922.632772	-1.2966	-0.00059946	1.1557	0.00053433	-0.14087	-6.5129E-05	462.3240471065514	92.205	1.7143	89.663	89.262	90.976	-2.5425					75	33	3	0	0	0	0.75915	1	8020	8020		20.482	0	1	358670			23548	3829	19241	19264	26240	26240					0.16836121824508155
KIPSVRPFKQ	10	Unmodified	_KIPSVRPFKQ_					0	0	0		ENSG00000197769|ENST00000357246|MAP1LC3C	ENSG00000197769|ENST00000357246|MAP1LC3C	ENSG00000197769|ENST00000357246|MAP1LC3C	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.54681396484375	3	400.580152	1198.71863	1.3988	0.00056035	-0.63763	-0.00025542	0.7612	0.00030492	400.5798964577592	62.156	0.42295	62.156	61.912	62.335	0					13	9	2	0	0	0	0.026685	1	5520	5520		50.034	22.39	1	186320			23549	8747	19242	19265	26241	26241					0.1272166193934936
KIQALHFSL	9	Unmodified	_KIQALHFSL_					0	0	0		ASB6|p.K406Efs*14|1|0.07|ENSG00000148331|chr9:129637840-129637841|-/GAGCTGAGATTGCGCCACTGCACTC|frameshift_variant;ENSG00000148331|ENST00000277458|ASB6	ASB6|p.K406Efs*14|1|0.07|ENSG00000148331|chr9:129637840-129637841|-/GAGCTGAGATTGCGCCACTGCACTC|frameshift_variant	ASB6|p.K406Efs*14|1|0.07|ENSG00000148331|chr9:129637840-129637841|-/GAGCTGAGATTGCGCCACTGCACTC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.8101196289062	2	528.813659	1055.61277	-1.7132	-0.00090594	-2.6969	-0.0014261	-4.41	-0.0023321	528.8119927872465	61.14	1.6998	58.379	57.881	59.581	-2.7606					66	32	3	0	0	0	0.027441	1	4599	4599		58.782	5.4305	1	98175			23550	121	19243	19266	26242	26242					0.08718326093890028
KIQARHLVE	9	Unmodified	_KIQARHLVE_					0	0	0		nc|ENSG00000204396|Q9Y334-2|VWA7;ENSG00000204396|ENST00000375688|VWA7	nc|ENSG00000204396|Q9Y334-2|VWA7	nc|ENSG00000204396|Q9Y334-2|VWA7	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.3455810546875	2	547.327465	1092.64038	-0.69522	-0.00038051	-3.6226	-0.0019828	-4.3178	-0.0023633	547.3264020994518	36.141	0.22826	36.141	36.029	36.257	0					6	4	2	0	0	0	0.027462	1	1894	1894		30.504	0	1	25952			23551	8981	19244	19267	26243	26243					0.0977622935411091
KIQARHLVE	9	Unmodified	_KIQARHLVE_					0	0	0		nc|ENSG00000204396|Q9Y334-2|VWA7;ENSG00000204396|ENST00000375688|VWA7	nc|ENSG00000204396|Q9Y334-2|VWA7	nc|ENSG00000204396|Q9Y334-2|VWA7	MULTI-MATCH	OvCa9_classI_Rep2	2		2	547.327465	1092.64038	-0.9343	-0.00051137	-9.9081	-0.005423	-10.842	-0.0059343	547.3219149502503	38.99	0.69325	36.28	36.112	36.805	-2.7097	0.010756	-0.00056107	NaN	23.042	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57578			23552	8981	19244	19267							0.0977622935411091
KIQDRIIAI	9	Unmodified	_KIQDRIIAI_					0	0	0			REV__nc|ENSG00000185963|Q8TD16|BICD2	REV__nc|ENSG00000185963|Q8TD16|BICD2	MULTI-MSMS	OvCa99_classI_Rep5	1	535.3416137695312	2	535.340041	1068.66553	-0.083118	-4.4496E-05	0.00038303	2.0505E-07	-0.082735	-4.4291E-05	535.3398323970929	60.643	0.87474	60.643	60.153	61.028	0					60	20	4	0	0	0	0.38969	1	5323	5323		52.937	1.744	1	1902100	+		23553	15701	19245	19268	26244	26244					0.13394284156697722
KIQDVGLVPM	10	Unmodified	_KIQDVGLVPM_					0	0	0		ENSG00000262814|ENST00000333676|MRPL12	ENSG00000262814|ENST00000333676|MRPL12	ENSG00000262814|ENST00000333676|MRPL12	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.2833862304688	2	550.312635	1098.61072	-0.19709	-0.00010846	3.9605	0.0021795	3.7634	0.0020711	550.3146789146494	68.919	0.45709	68.919	68.606	69.063	0					19	10	3	0	0	0	0.026931	1	6548	6548		45.972	11.8	1	347860			23554	9512	19246	19269	26245	26245					0.06535529293773834
KIQETLKL	8	Unmodified	_KIQETLKL_					0	0	0			REV__nc|ENSG00000172765|O94876-2|TMCC1	REV__nc|ENSG00000172765|O94876-2|TMCC1	MULTI-MSMS	OvCa9_classI_Rep2	2	486.8093566894531	2	486.808042	971.601532	1.2422	0.00060471	3.065	0.0014921	4.3072	0.0020968	486.80935668338475	129.16	1.5814	128.93	128.62	130.21	-0.22696					73	31	4	0	0	0	0.73205	1	12714	12714		35.618	0	1	189380	+		23555	21724	19247	19270	26246	26246					0.11459503999742537
KIQFSRRTYKM	11	Unmodified	_KIQFSRRTYKM_					0	0	0		nc|ENSG00000143921|Q9H221-2|ABCG8;ENSG00000143921|ENST00000272286|ABCG8	nc|ENSG00000143921|Q9H221-2|ABCG8	nc|ENSG00000143921|Q9H221-2|ABCG8	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.79437255859375	3	486.606373	1456.79729	-0.62039	-0.00030189	4.2949	0.0020899	3.6745	0.001788	486.6084686362603	49.351	0.43156	49.351	49.075	49.507	0					22	9	3	0	0	0	0.026101	1	3665	3665		15.921	0	1	562900			23556	5107	19248	19271	26247	26247					0.08716146182132434
KIQKAWAI	8	Unmodified	_KIQKAWAI_					0	0	0		nc|ENSG00000182473|Q9UPT5-2|EXOC7;nc|ENSG00000182473|Q9UPT5-5|EXOC7;ENSG00000182473|ENST00000589210|EXOC7;nc|ENSG00000182473|Q9UPT5-6|EXOC7;nc|ENSG00000182473|Q9UPT5|EXOC7;ENST00000465252.5_1_17:74079731-74080394:-|nuORF;ENST00000467586.5_1_17:74079731-74084011:-|nuORF	nc|ENSG00000182473|Q9UPT5-2|EXOC7	nc|ENSG00000182473|Q9UPT5-2|EXOC7	MULTI-MSMS	OvCa99_classI_Rep5	1	479.2994384765625	2	479.297645	956.580737	-0.34127	-0.00016357	0.3243	0.00015544	-0.016968	-8.1328E-06	479.2976220571187	61.763	0.91955	61.763	61.458	62.378	0					54	21	4	0	0	0	0.59148	1	5456	5456		65.803	15.779	1	3503600			23557	8002	19249	19272	26248	26248					0.10070958410744879
KIQKQSNKKV	10	Unmodified	_KIQKQSNKKV_					0	0	0			REV__ENST00000484437.1_1_3:44779222-44795794:-|nuORF	REV__ENST00000484437.1_1_3:44779222-44795794:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	600.8758544921875	2	600.874779	1199.73501	3.2267	0.0019389	-3.6309	-0.0021817	-0.40418	-0.00024286	600.87249176736	25.158	0.69406	22.449	22.29	22.984	-2.7097					30	14	3	0	0	0	0.79917	1	228	228		19.104	0.84144	1	72912	+		23558	20891	19250	19273	26249	26249					0.1431274310543813
KIQKYLYN	8	Unmodified	_KIQKYLYN_					0	0	0			REV__tr|A0A553STX0|A0A553STX0_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_05840PE=3SV=1	REV__tr|A0A553STX0|A0A553STX0_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_05840PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.7794189453125	2	535.305667	1068.59678	0.38978	0.00020865	-2.8405	-0.0015205	-2.4507	-0.0013119	535.3040060371542	72.313	1.5526	72.313	72.045	73.597	0					62	38	2	0	0	0	0.028476	1	7075	7075		38.806	0	1	1775500	+		23559	31019	19251	19274	26250	26250					0.06522619856968959
KIQLLPSDKGI	11	Unmodified	_KIQLLPSDKGI_					0	0	0			REV__tr|A0A7D6VT47|A0A7D6VT47_9CLOTD-2-hydroxyaciddehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15540PE=3SV=1	REV__tr|A0A7D6VT47|A0A7D6VT47_9CLOTD-2-hydroxyaciddehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15540PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.36962890625	2	606.371538	1210.72852	-0.26856	-0.00016285	-2.8049	-0.0017008	-3.0734	-0.0018636	606.369699493104	145.24	3.8933	143.8	141.64	145.53	-1.4357					226	74	4	0	0	0	0.72064	1	14271	14271		22.58	0	1	336140	+		23560	31571	19252	19275	26251	26251					0.13158805154057518
KIQLPAEVD	9	Unmodified	_KIQLPAEVD_					0	0	0		ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.7782287597656	2	506.787307	1011.56006	2.1446	0.0010869	-0.38287	-0.00019403	1.7617	0.00089282	506.78704156457013	77.014	0.61444	77.014	76.678	77.293	0					32	14	3	0	0	0	0.027462	1	7750	7750		30.504	9.5567	1	1099800			23561	5606	19253	19276	26252	26252					0.054743232404121045
KIQPTDIQP	9	Unmodified	_KIQPTDIQP_					0	0	0		ENSG00000089775|ENST00000608382|ZBTB25	ENSG00000089775|ENST00000608382|ZBTB25	ENSG00000089775|ENST00000608382|ZBTB25	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.2841186523438	2	520.292756	1038.57096	-0.36219	-0.00018845	0.87027	0.0004528	0.50808	0.00026435	520.292943776332	67.377	0.70644	67.377	67.173	67.88	0					30	17	3	0	0	0	0.027462	1	6334	6334		30.318	0	1	678790			23562	1828	19254	19277	26253	26253					0.053217256147036096
KIQSIPLPPTT	11	Unmodified	_KIQSIPLPPTT_					0	0	0		nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1;ENSG00000179981|ENST00000580243|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8554077148438	2	597.858264	1193.70197	-2.7036	-0.0016164	-0.53743	-0.00032131	-3.241	-0.0019377	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.70761	1	12353	12353		27.047	4.0048	1	591030			23563	7852	19255	19278	26254	26254					0.11287116262747077
KIQSIPLPPTT	11	Unmodified	_KIQSIPLPPTT_					0	0	0		nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1;ENSG00000179981|ENST00000580243|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8562622070312	2	597.858264	1193.70197	-1.5377	-0.00091935	-1.5701	-0.00093869	-3.1078	-0.001858	597.8570606153338	148.28	4.8676	146.85	145.38	150.25	-1.435					291	102	5	0	0	0	0.69099	1	14558	14558		32.751	2.4328	1	767860			23564	7852	19255	19278	26255	26255					0.11287116262747077
KIQSIPLPPTT	11	Unmodified	_KIQSIPLPPTT_					0	0	0		nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1;ENSG00000179981|ENST00000580243|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	MSMS	OvCa9_classI_Rep4_	4	597.8560791015625	2	597.858264	1193.70197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.81	1	148.37	147.87	148.87	-1.4344								0	0	0	0.19276	1	14785	14785		42.864	0.46813	1				23565	7852	19255	19278	26256	26256					0.11287116262747077
KIQWLKLH	8	Unmodified	_KIQWLKLH_					0	0	0			REV__ENST00000396076.5_1_12:21797030-21799877:-|nuORF	REV__ENST00000396076.5_1_12:21797030-21799877:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	533.7969970703125	2	533.332019	1064.64948	-0.38434	-0.00020498	-3.5663	-0.001902	-3.9507	-0.002107	533.3299701983711	65.052	1.5853	62.328	61.705	63.29	-2.7245					62	30	3	0	0	0	0.028476	1	5041	5041		40.573	7.057	1	177350	+		23566	25326	19256	19279	26257	26257					0.11974622710431504
KIRAHIAALF	10	Unmodified	_KIRAHIAALF_					0	0	0			REV__tr|A0A553SPS9|A0A553SPS9_NIACIPhoD-likephosphatasemetallophosphatasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26840PE=4SV=1	REV__tr|A0A553SPS9|A0A553SPS9_NIACIPhoD-likephosphatasemetallophosphatasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26840PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	569.777587890625	2	570.356025	1138.6975	-0.15	-8.5554E-05	2.5556	0.0014576	2.4056	0.001372	570.3572062057185	94.36	0.83968	91.892	91.571	92.41	-2.4685					32	16	3	0	0	0	0.026871	1	8286	8286		15.642	0	1	112470	+		23567	30564	19257	19280	26258	26258					0.13369696630479666
KIRDGSLK	8	Unmodified	_KIRDGSLK_					0	0	0			REV__ENST00000475707.5_1_3:15045421-15079667:+|nuORF	REV__ENST00000475707.5_1_3:15045421-15079667:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	458.7818603515625	2	458.782359	915.550165	-1.2943	-0.00059382	1.1634	0.00053377	-0.13089	-6.0052E-05	458.78281032572033	34.903	0.94068	32.193	31.959	32.9	-2.7097					33	18	2	0	0	0	0.6345	1	1373	1373		56.721	9.0637	1	153160	+		23568	22007	19258	19281	26259	26259					0.08901180025702615
KIREKILSC	9	Unmodified	_KIREKILSC_					0	0	0		tr|A0A7D6VXE5|A0A7D6VXE5_9CLOTMethyltransferasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08220PE=4SV=1	tr|A0A7D6VXE5|A0A7D6VXE5_9CLOTMethyltransferasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08220PE=4SV=1	tr|A0A7D6VXE5|A0A7D6VXE5_9CLOTMethyltransferasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08220PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	546.300537109375	2	545.326076	1088.6376	-0.13527	-7.3765E-05	-3.7056	-0.0020208	-3.8409	-0.0020945	545.3240645953297	72.497	1.6879	69.894	69.521	71.209	-2.6023					85	33	4	0	0	0	0.027462	1	3416	3416		24.519	9.6543	1	282950			23569	35277	19259	19282	26260	26260					0.09682637904984404
KIRELESQI	9	Unmodified	_KIRELESQI_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.A1773Sfs*19|1|0.04|ENSG00000100345|chr22:36285287-36285288|-/T|frameshift_variant;CHD2-MYH9|1|fusion	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OvCa99_classI_Rep5	1	558.326416015625	2	558.324588	1114.63462	0.043163	2.4099E-05	-0.62426	-0.00034854	-0.5811	-0.00032444	558.3242794668495	58.817	1.9893	58.817	58.488	60.477	0					143	50	5	0	0	0	0.021573	3	5003	5003;5032;5063		145.16	0	1	26377000			23570	2050	19260	19283	26261;26262;26263	26261					0.08189086051788763
KIRELESQI	9	Unmodified	_KIRELESQI_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.A1773Sfs*19|1|0.04|ENSG00000100345|chr22:36285287-36285288|-/T|frameshift_variant;CHD2-MYH9|1|fusion	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MATCH	OvCa9_classI_Rep2	2		2	558.324588	1114.63462	-0.76214	-0.00042552	2.1631	0.0012077	1.401	0.00078219	558.3268525045657	61.663	0.52342	58.903	58.464	58.987	-2.7593	0.04304	0.0030643	NaN	145.16	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16061			23571	2050	19260	19283							0.08189086051788763
KIRELILDGS	10	Unmodified	_KIRELILDGS_					0	0	0		ENSG00000101574|ENST00000574538|METTL4;ENST00000573134.1_1_18:2554662-2567215:-|nuORF	ENSG00000101574|ENST00000574538|METTL4	ENSG00000101574|ENST00000574538|METTL4	MULTI-SECPEP	OvCa9_classI_Rep2	2	572.3170166015625	2	572.340238	1142.66592	-0.50553	-0.00028934	-0.34839	-0.0001994	-0.85392	-0.00048873	572.3399973214058	80.5	0.89928	78.805	78.568	79.468	-1.6951					58	17	4	0	0	0	0.026734	1	6874	6874		47.657	0	1	207710			23572	2187	19261	19284	26264	26264					0.10029659085898857
KIRFIRPQ	8	Unmodified	_KIRFIRPQ_					0	0	0			REV__nc|ENSG00000255561|Q9BRP7-2|FDXACB1	REV__nc|ENSG00000255561|Q9BRP7-2|FDXACB1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.7030639648438	2	529.335093	1056.65563	0.5451	0.00028854	0.91241	0.00048297	1.4575	0.00077151	529.3354742921654	139.27	0.31409	137.76	137.61	137.92	-1.5148					8	5	2	0	0	0	0.028476	1	13575	13575		19.36	0	1	13238	+		23573	23530	19262	19285	26265	26265					0.12957140941966827
KIRFIRPQ	8	Unmodified	_KIRFIRPQ_					0	0	0			REV__nc|ENSG00000255561|Q9BRP7-2|FDXACB1	REV__nc|ENSG00000255561|Q9BRP7-2|FDXACB1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	529.335093	1056.65563	-1.8479	-0.00097817	3.0291	0.0016034	1.1811	0.00062522	529.3361389884265	138.84	0.29582	137.78	137.68	137.98	-1.0595	0.0095762	0.0016664	NaN	19.36	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8544.5	+		23574	23530	19262	19285							0.12957140941966827
KIRHDLILKHW	11	Unmodified	_KIRHDLILKHW_					0	0	0			REV__nc|ENSG00000163617|Q8NCU4-2|CCDC191	REV__nc|ENSG00000163617|Q8NCU4-2|CCDC191	MULTI-MSMS	OvCa9_classI_Rep3	3	486.95880126953125	3	486.961256	1457.86194	-7.2825	-0.0035463	2.5142	0.0012243	-4.7683	-0.002322	486.9623381995862	161.08	3.4384	159.71	158.52	161.96	-1.3692					219	70	4	0	0	0	0.72483	1	14011	14011		17.833	0.6664	1	133400	+		23575	20860	19263	19286	26266	26266					0.1513208905043939
KIRHTGEK	8	Unmodified	_KIRHTGEK_					0	0	0		ENST00000380882.5_4:85656-87337:+|nuORF;ENSG00000196109|ENST00000397121|ZNF676;ENSG00000272602|ENST00000610261|ZNF595	ENST00000380882.5_4:85656-87337:+|nuORF	ENST00000380882.5_4:85656-87337:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.7740783691406	2	484.785433	967.556313	-1.0528	-0.00051041	0.49083	0.00023795	-0.56202	-0.00027246	484.7854599821288	42.939	1.3472	39.932	39.189	40.536	-3.0074					37	25	2	0	0	0	0.028476	1	2045	2045		34.173	5.023	1	62033			23576	11154	19264	19287	26267	26267					0.07123698257225897
KIRKKDIE	8	Unmodified	_KIRKKDIE_					0	0	0			REV__tr|A0A7D6W3H2|A0A7D6W3H2_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10065PE=4SV=1	REV__tr|A0A7D6W3H2|A0A7D6W3H2_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10065PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	516.270751953125	2	515.324391	1028.63423	0.41634	0.00021455	2.0138	0.0010378	2.4301	0.0012523	515.3251650468989	79.511	0.36549	77.791	77.48	77.846	-1.7198					8	6	2	0	0	0	0.028476	1	6649	6649		58.782	12.81	1	22192	+		23577	31915	19265	19288	26268	26268					0.12105711122626417
KIRKQLSN	8	Unmodified	_KIRKQLSN_					0	0	0			REV__ENST00000480988.5_1_1:113119662-113161548:-|nuORF	REV__ENST00000480988.5_1_1:113119662-113161548:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.8092041015625	2	493.808908	985.603263	0.72189	0.00035648	-1.0814	-0.00053399	-0.35948	-0.00017751	493.8082033689365	31.126	0.76694	28.595	28.34	29.107	-2.5308					53	29	3	0	0	0	0.73205	1	684	684		35.618	2.1027	1	34842	+		23578	26471	19266	19289	26269	26269					0.10988557808366295
KIRNNGTVSL	10	Unmodified	_KIRNNGTVSL_					0	0	0			REV__tr|A0A553SSH4|A0A553SSH4_NIACINTTRR-F1domainOS=NialliacirculansOX=1397GN=CEQ21_02905PE=4SV=1	REV__tr|A0A553SSH4|A0A553SSH4_NIACINTTRR-F1domainOS=NialliacirculansOX=1397GN=CEQ21_02905PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.8405151367188	2	551.32238	1100.63021	-1.1107	-0.00061237	0.50857	0.00028039	-0.60216	-0.00033198	551.3225214942638	34.84	0.42149	34.84	34.679	35.1	0					13	8	2	0	0	0	0.026994	1	1739	1739		19.104	3.4617	1	91529	+		23579	30839	19267	19290	26270	26270					0.08391621628902612
KIRQARRA	8	Unmodified	_KIRQARRA_					0	0	0		ENSG00000128805|ENST00000249601|ARHGAP22;nc|ENSG00000128805|Q7Z5H3-2|ARHGAP22	ENSG00000128805|ENST00000249601|ARHGAP22	ENSG00000128805|ENST00000249601|ARHGAP22	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.76837158203125	2	499.820141	997.62573	-0.57843	-0.00028911	3.086	0.0015425	2.5076	0.0012534	499.8215198504847	61.365	0.7126	61.365	61.113	61.826	0					38	16	3	0	0	0	0.028476	1	5411	5411		60.294	0	1	3145800			23580	3904	19268	19291	26271	26271					0.12682201996642561
KIRQLNGSIS	10	Unmodified	_KIRQLNGSIS_					0	0	0			REV__ENSG00000132205|ENST00000254528|EMILIN2	REV__ENSG00000132205|ENST00000254528|EMILIN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.2824096679688	2	558.330205	1114.64586	1.7875	0.00099799	3.1698	0.0017698	4.9573	0.0027678	558.3315701022029	79.056	0.97644	79.056	78.335	79.311	0					29	23	2	0	0	0	0.027056	1	7957	7957		20.947	0	1	489370	+		23581	19059	19269	19292	26272	26272					0.0931190814594629
KIRQLNGSIS	10	Unmodified	_KIRQLNGSIS_					0	0	0			REV__ENSG00000132205|ENST00000254528|EMILIN2	REV__ENSG00000132205|ENST00000254528|EMILIN2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	558.330205	1114.64586	0.87938	0.00049098	1.52	0.00084869	2.3994	0.0013397	558.3310339232363	80.509	0.39855	78.814	78.519	78.917	-1.6951	-0.057664	-0.0013259	NaN	20.947	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16956	+		23582	19059	19269	19292							0.0931190814594629
KIRQLNGSIS	10	Unmodified	_KIRQLNGSIS_					0	0	0			REV__ENSG00000132205|ENST00000254528|EMILIN2	REV__ENSG00000132205|ENST00000254528|EMILIN2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	558.330205	1114.64586	-0.70744	-0.00039499	3.6586	0.0020427	2.9511	0.0016477	558.332281768994	81.068	0.51562	78.745	78.492	79.007	-2.3226	-0.12648	0.0010621	NaN	20.947	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25339	+		23583	19059	19269	19292							0.0931190814594629
KIRSAAHAT	9	Unmodified	_KIRSAAHAT_					0	0	0			REV__ENSG00000239305|ENST00000237455|RNF103	REV__ENSG00000239305|ENST00000237455|RNF103	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.30596923828125	2	477.777608	953.540663	-0.40913	-0.00019547	0.84697	0.00040466	0.43784	0.00020919	477.7774725488629	40.452	0.68155	37.498	37.315	37.997	-2.9541					18	12	2	0	0	0	0.027462	1	1771	1771		37.159	6.6555	1	66976	+		23584	23429	19270	19293	26273	26273					0.0620341174017085
KIRSKVQKL	9	Unmodified	_KIRSKVQKL_					0	0	0		tr|A0A7D6VQS0|A0A7D6VQS0_9CLOTPTSsystemmannitol-specificEIICBcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_02735PE=4SV=1	tr|A0A7D6VQS0|A0A7D6VQS0_9CLOTPTSsystemmannitol-specificEIICBcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_02735PE=4SV=1	tr|A0A7D6VQS0|A0A7D6VQS0_9CLOTPTSsystemmannitol-specificEIICBcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_02735PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	550.3706665039062	2	550.369133	1098.72371	-0.22578	-0.00012426	-0.66762	-0.00036744	-0.89339	-0.0004917	550.3687451922791	30.756	1.0269	30.756	30.532	31.559	0					54	20	5	0	0	0	0.27001	1	1201	1201		66.429	0	1	2017100			23585	34867	19271	19294	26274	26274					0.17829965801979597
KIRSVGMAIT	10	Unmodified	_KIRSVGMAIT_					0	0	0		tr|A0A7D6VRM3|A0A7D6VRM3_9CLOTMolybdopterin-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02060PE=4SV=1	tr|A0A7D6VRM3|A0A7D6VRM3_9CLOTMolybdopterin-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02060PE=4SV=1	tr|A0A7D6VRM3|A0A7D6VRM3_9CLOTMolybdopterin-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02060PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.2899169921875	2	538.318251	1074.62195	1.9179	0.0010324	-1.399	-0.00075309	0.51895	0.00027936	538.3170655356474	107.32	0.54446	107.32	106.97	107.52	0					19	12	3	0	0	0	0.027056	1	12059	12059		20.947	0	1	537870			23586	34944	19272	19295	26275	26275					0.08762351387917988
KIRYYTYLI	9	Unmodified	_KIRYYTYLI_					0	0	0		ENSG00000125730|ENST00000245907|C3;C3|p.Y686Cfs*19|1|0.14|ENSG00000125730|chr19:6707264-6707265|-/AC|frameshift_variant	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-SECPEP	OvCa9_classI_Rep2	2	412.2308654785156	3	411.572775	1231.69649	1.9119	0.00078688	0.44266	0.00018219	2.3545	0.00096907	411.5728290908228	65.481	0.25193	62.785	62.62	62.872	-2.6958					6	4	2	0	0	0	0.027462	1	5027	5027		52.937	15.429	1	5917.9			23587	3725	19273	19296	26276	26276					0.08991437470922392
KISDEGIAY	9	Unmodified	_KISDEGIAY_					0	0	0		ENST00000479307.5_1_3:186508099-186512490:-|nuORF;nc|ENSG00000163918|P35249-2|RFC4;ENST00000494047.5_1_3:186509405-186522502:-|nuORF;ENSG00000163918|ENST00000296273|RFC4	ENST00000479307.5_1_3:186508099-186512490:-|nuORF	ENST00000479307.5_1_3:186508099-186512490:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.7829895019531	2	498.25584	994.497126	-0.85425	-0.00042564	1.6164	0.00080537	0.76213	0.00037973	498.2562231744104	65.566	0.67886	65.566	65.111	65.79	0					20	16	2	0	0	0	0.027462	1	6059	6059		13.775	0	1	222130			23588	6378	19274	19297	26277	26277					-0.00034242547633311915
KISEGKLEV	9	Unmodified	_KISEGKLEV_					0	0	0			REV__tr|A0A7D6ZN77|A0A7D6ZN77_9CLOTAspartate--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=aspSPE=3SV=1	REV__tr|A0A7D6ZN77|A0A7D6ZN77_9CLOTAspartate--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=aspSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.7812194824219	2	501.795132	1001.57571	-3.2032	-0.0016074	2.7797	0.0013949	-0.42346	-0.00021249	501.7963789222753	88.156	0.50471	85.553	85.327	85.832	-2.6027					15	9	2	0	0	0	0.027462	1	7546	7546		19.104	0	1	56349	+		23589	32116	19275	19298	26278	26278					0.07498609757476515
KISFLQYAQ	9	Unmodified	_KISFLQYAQ_					0	0	0			REV__ENST00000503065.1_1_5:39269825-39270805:-|nuORF	REV__ENST00000503065.1_1_5:39269825-39270805:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	550.27880859375	2	549.303124	1096.5917	0.047476	2.6079E-05	-0.29065	-0.00015966	-0.24318	-0.00013358	549.302854687118	93.931	1.4601	92.832	92.539	93.999	-1.0995					63	28	3	0	0	0	0.027462	1	8443	8443		26.693	0	1	338750	+		23590	26838	19276	19299	26279	26279					0.04726315994366814
KISGKEARQL	10	Unmodified	_KISGKEARQL_					0	0	0		nc|ENSG00000066827|Q9P243-3|ZFAT;nc|ENSG00000066827|Q9P243-2|ZFAT;ENSG00000066827|ENST00000377838|ZFAT;ENST00000523040.1_1_8:135615174-135649821:-|nuORF;ZFAT|p.T252Hfs*7|1|0.16|ENSG00000066827|chr8:134608760-134608760|T/-|frameshift_variant	nc|ENSG00000066827|Q9P243-3|ZFAT	nc|ENSG00000066827|Q9P243-3|ZFAT	MULTI-SECPEP	OvCa9_classI_Rep4_	4	566.2973022460938	2	565.33803	1128.66151	0.37774	0.00021355	1.8786	0.001062	2.2563	0.0012756	565.3386834763543	101.21	0.56628	98.941	98.838	99.404	-2.2665					16	11	2	0	0	0	0.02678	1	9081	9081		43.651	0	1	140300			23591	1360	19277	19300	26280	26280					0.10232194662967231
KISHEIVAFPQ	11	Unmodified	_KISHEIVAFPQ_					0	0	0		tr|A0A553SGA3|A0A553SGA3_NIACIDeaminaseOS=NialliacirculansOX=1397GN=CEQ21_10430PE=4SV=1	tr|A0A553SGA3|A0A553SGA3_NIACIDeaminaseOS=NialliacirculansOX=1397GN=CEQ21_10430PE=4SV=1	tr|A0A553SGA3|A0A553SGA3_NIACIDeaminaseOS=NialliacirculansOX=1397GN=CEQ21_10430PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	422.91973876953125	3	423.571434	1267.69247	-0.029869	-1.2652E-05	-3.3675	-0.0014264	-3.3973	-0.001439	423.9043494861845	75.997	0.50797	73.626	73.317	73.825	-2.3715					15	9	3	0	0	0	0.025271	1	3873	3873		32.034	0	1	9475.6			23592	33133	19278	19301	26281	26281					0.06933347977224003
KISHLYGLA	9	Unmodified	_KISHLYGLA_					0	0	0			REV__nc|ENSG00000288602|Q96BR1-2|SGK3	REV__nc|ENSG00000288602|Q96BR1-2|SGK3	MULTI-MSMS	OvCa9_classI_Rep3	3	501.28973388671875	2	501.292559	1000.57057	-1.4695	-0.00073667	-2.6975	-0.0013522	-4.167	-0.0020889	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.62352	1	11193	11193		29.15	1.2673	1	97838	+		23593	17649	19279	19302	26282	26282					0.07030350685511166
KISHTTGI	8	Unmodified	_KISHTTGI_					0	0	0		nc|ENSG821|P63135|ERVK-7_pol;nc|ENSG855|P10266|ERVK-10_pol;nc|ENSG853|Q9UQG0|ERVK-11;nc|ENSG801|P63132|HERVK_113_pro;nc|ENSG814|P63133|ERVK-8_pol;nc|ENSG826|Q9BXR3|ERVK-6_gag;nc|ENSG832|P63136|ERVK-25_pol;nc|ENSG851|Q9QC07|ERVK-18_pol;nc|ENSG844|Q9WJR5|ERVK-19_pol	nc|ENSG821|P63135|ERVK-7_pol;nc|ENSG844|Q9WJR5|ERVK-19_pol	nc|ENSG844|Q9WJR5|ERVK-19_pol	MULTI-MSMS	OvCa99_classI_Rep5	1	428.7491760253906	2	428.747985	855.481417	-0.10908	-4.6769E-05	0.34422	0.00014759	0.23514	0.00010082	428.7480274845888	58.789	0.69794	58.789	58.53	59.228	0					41	17	4	0	0	0	0.66704	1	5030	5030		50.025	2.1089	1	1411900			23594	15410;15411	19280	19303	26283	26283					0.047895157259858934
KISKEIVAK	9	Unmodified	_KISKEIVAK_					0	0	0			REV__tr|A0A7D6VQY0|A0A7D6VQY0_9CLOTDihydroxy-aciddehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_23215PE=3SV=1	REV__tr|A0A7D6VQY0|A0A7D6VQY0_9CLOTDihydroxy-aciddehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_23215PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.3288879394531	2	508.329142	1014.64373	-0.44807	-0.00022777	-0.032736	-1.6641E-05	-0.4808	-0.00024441	508.3290266162964	50.752	1.0354	50.752	50.509	51.544	0					55	23	4	0	0	0	0.2422	1	3894	3894		69.628	3.1983	1	5697100	+		23595	31369	19281	19304	26284	26284					0.1369947940812608
KISKEKEK	8	Unmodified	_KISKEKEK_					0	0	0		ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11;ANKRD11|p.R1597Lfs*44|1|0.12|ENSG00000167522|chr16:89281752-89281753|-/A|frameshift_variant;ANKRD11|p.H1613Tfs*39|1|0.32|ENSG00000167522|chr16:89281705-89281706|-/GGCACGGGCGTGGAGTGCTGCGAGTCGGCGCAGT|frameshift_variant	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.3033447265625	2	495.303124	988.591695	0.85082	0.00042141	-1.0215	-0.00050596	-0.1707	-8.4549E-05	495.3024741844663	34.424	1.1524	31.636	31.399	32.551	-2.7881					53	22	4	0	0	0	0.66057	1	1028	1028		51.335	3.6781	1	179270			23596	6795	19282	19305	26285	26285					0.09694315994374847
KISKEQLSE	9	Unmodified	_KISKEQLSE_					0	0	0			REV__nc|ENSG00000166317|Q9H987-2|SYNPO2L	REV__nc|ENSG00000166317|Q9H987-2|SYNPO2L	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.2857055664062	2	531.295496	1060.57644	1.9807	0.0010523	4.3682	0.0023208	6.3489	0.0033731	531.2976141570307	137.77	0.71222	137.77	137.4	138.11	0					36	15	3	0	0	0	0.027462	1	16074	16074		42.864	19.342	1	144930	+		23597	21176	19283	19306	26286	26286					0.0485740440653899
KISKLEVTE	9	Unmodified	_KISKLEVTE_					0	0	0		RBBP6|p.K1580Rfs*6|1|0.13|ENSG00000122257|chr16:24571804-24571805|AA/-|frameshift_variant;nc|ENSG00000122257|Q7Z6E9-2|RBBP6;ENSG00000122257|ENST00000319715|RBBP6	RBBP6|p.K1580Rfs*6|1|0.13|ENSG00000122257|chr16:24571804-24571805|AA/-|frameshift_variant	RBBP6|p.K1580Rfs*6|1|0.13|ENSG00000122257|chr16:24571804-24571805|AA/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7554931640625	2	523.808239	1045.60193	-0.77418	-0.00040552	0.78242	0.00040984	0.0082347	4.3134E-06	523.8083503576521	54.158	1.0054	54.158	53.929	54.935	0					48	23	3	0	0	0	0.027462	1	4393	4393		24.519	0	1	958360			23598	3524	19284	19307	26287	26287					0.0809487892895504
KISLLFRSQ	9	Unmodified	_KISLLFRSQ_					0	0	0			REV__tr|A0A553SGN3|A0A553SGN3_NIACIPhosphoribosylformylglycinamidinesynthasesubunitPurLOS=NialliacirculansOX=1397GN=purLPE=3SV=1	REV__tr|A0A553SGN3|A0A553SGN3_NIACIPhosphoribosylformylglycinamidinesynthasesubunitPurLOS=NialliacirculansOX=1397GN=purLPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.3310546875	2	546.332216	1090.64988	0.57396	0.00031357	-3.4319	-0.0018749	-2.8579	-0.0015614	546.3302191318373	36.413	1.4954	33.564	33.09	34.585	-2.849					89	29	4	0	0	0	0.60342	1	1245	1245		31.53	5.9558	1	390640	+		23599	29724	19285	19308	26288	26288					0.10817997639651367
KISNKRPL	8	Unmodified	_KISNKRPL_					0	0	0			REV__ENST00000426654.6_1_16:69733899-69734280:+|nuORF	REV__ENST00000426654.6_1_16:69733899-69734280:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.30596923828125	2	478.306001	954.597449	-0.57959	-0.00027722	-0.42308	-0.00020236	-1.0027	-0.00047958	478.30577377690133	40.613	2.2753	37.659	37.421	39.697	-2.9541					122	43	5	0	0	0	0.57878	1	1771	1771		68.485	4.2774	1	2613300	+		23600	25669	19286	19309	26289	26289					0.11833459296701676
KISRPEPE	8	Unmodified	_KISRPEPE_					0	0	0			REV__tr|A0A553SJJ5|A0A553SJJ5_NIACIDUF378domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16935PE=4SV=1	REV__tr|A0A553SJJ5|A0A553SJJ5_NIACIDUF378domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16935PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.79400634765625	2	478.263999	954.513445	-0.020799	-9.9476E-06	0.20687	9.8937E-05	0.18607	8.8989E-05	478.2640215225098	71.152	0.59372	71.152	70.954	71.548	0					20	14	2	0	0	0	0.028476	1	6918	6918		45.952	0	1	642340	+		23601	30010	19287	19310	26290	26290					0.03436883409131042
KISSATKCVR	10	Unmodified	_KISSATKCVR_					0	0	0			REV__tr|A0A7D6VQD6|A0A7D6VQD6_9CLOTSite-specificDNA-methyltransferase(adenine-specific)OS=ClostridiumintestinaleOX=36845GN=HZF06_20580PE=4SV=1	REV__tr|A0A7D6VQD6|A0A7D6VQD6_9CLOTSite-specificDNA-methyltransferase(adenine-specific)OS=ClostridiumintestinaleOX=36845GN=HZF06_20580PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	546.8095703125	2	546.813333	1091.61211	-0.3367	-0.00018411	-3.8806	-0.002122	-4.2173	-0.0023061	546.811268925944	77.282	4.1237	75.493	75.051	79.174	-1.7894					214	80	5	0	0	0	0.41408	1	6499	6499		66.429	3.123	1	5234200	+		23602	31316	19288	19311	26291	26291					0.06997163382516192
KISSAVLKA	9	Unmodified	_KISSAVLKA_					0	0	0		ENSG00000119421|ENST00000373768|NDUFA8	ENSG00000119421|ENST00000373768|NDUFA8	ENSG00000119421|ENST00000373768|NDUFA8	MULTI-MSMS	OvCa99_classI_Rep5	1	458.79718017578125	2	458.794935	915.575317	-0.3763	-0.00017265	0.59098	0.00027114	0.21468	9.8495E-05	458.7950750643022	48.395	0.82697	48.395	48.204	49.031	0					39	18	3	0	0	0	0.13504	1	3552	3552		87.696	13.441	1	1801600			23603	3363	19289	19312	26292	26292					0.11415234828268694
KISSHFKEI	9	Unmodified	_KISSHFKEI_					0	0	0			REV__tr|A0A553SQ46|A0A553SQ46_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_20130PE=4SV=1	REV__tr|A0A553SQ46|A0A553SQ46_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_20130PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	544.3031005859375	2	544.808574	1087.60259	-0.37112	-0.00020219	-1.0626	-0.00057893	-1.4337	-0.00078112	544.8076793315723	78.589	2.5947	76.237	75.253	77.848	-2.3527					128	51	4	0	0	0	0.045281	1	4165	4165		122.18	0	1	2782000	+		23604	30606	19290	19313	26293	26293					0.062297183686723656
KISSTMLHL	9	Unmodified	_KISSTMLHL_					0	0	0		PTPRZ1|p.E1817Nfs*9|1|0.49|ENSG00000106278|chr7:122038834-122038834|G/-|frameshift_variant;nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1	PTPRZ1|p.E1817Nfs*9|1|0.49|ENSG00000106278|chr7:122038834-122038834|G/-|frameshift_variant	PTPRZ1|p.E1817Nfs*9|1|0.49|ENSG00000106278|chr7:122038834-122038834|G/-|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	515.2965698242188	2	515.291702	1028.56885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.738	1	55.738	55.238	56.238	0								0	0	0	0.032201	1	4580	4580		87.754	15.877	1				23605	2539	19291	19314	26294	26294					0.05570973605267682
KISSTTPKP	9	Unmodified	_KISSTTPKP_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.74652099609375	2	479.782025	957.549496	1.0677	0.00051229	-1.9656	-0.00094304	-0.89782	-0.00043076	479.7810912683968	37.196	0.30021	34.303	34.092	34.392	-2.8925					8	5	2	0	0	0	0.027462	1	1331	1331		32.812	0	1	15813	+		23606	20219	19292	19315	26295	26295					0.0690234058599799
KISTDKSW	8	Unmodified	_KISTDKSW_					0	0	0		XRN1|p.G1339Efs*6|1|0.06|ENSG00000114127|chr3:142333013-142333014|-/T|frameshift_variant;ENSG00000114127|ENST00000392981|XRN1;nc|ENSG00000114127|Q8IZH2|XRN1;nc|ENSG00000114127|Q8IZH2-3|XRN1;XRN1|p.G776Rfs*16|1|0.03|ENSG00000114127|chr3:142397343-142397344|-/C|frameshift_variant;ENST00000472697.5_1_3:142095319-142144369:-|nuORF	XRN1|p.G1339Efs*6|1|0.06|ENSG00000114127|chr3:142333013-142333014|-/T|frameshift_variant	XRN1|p.G1339Efs*6|1|0.06|ENSG00000114127|chr3:142333013-142333014|-/T|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.71673583984375	2	482.758549	963.502546	2.1135	0.0010203	0.025804	1.2457E-05	2.1393	0.0010328	482.7583883273058	76.778	0.52206	76.778	76.48	77.002	0					23	12	2	0	0	0	0.028476	1	7741	7741		16.473	0.83134	1	806080			23607	3014	19293	19316	26296	26296					0.019334810348595965
KISVHFSVL	9	Unmodified	_KISVHFSVL_					0	0	0			REV__ENST00000260130.8_1_8:59494761-59494824:+|nuORF	REV__ENST00000260130.8_1_8:59494761-59494824:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.313232421875	2	515.30821	1028.60187	-0.56187	-0.00028954	2.7782	0.0014316	2.2164	0.0011421	515.3096379016093	101.33	2.7679	99.063	98.883	101.65	-2.2665					81	53	2	0	0	0	0.50149	1	9180	9180		42.396	0	1	144350	+		23608	23921	19294	19317	26297	26297					0.08870923719609891
KISVKSKP	8	Unmodified	_KISVKSKP_					0	0	0		tr|A0A7D6ZXD3|A0A7D6ZXD3_9CLOTHemesensorproteinHssSOS=ClostridiumintestinaleOX=36845GN=HZF06_12880PE=4SV=1	tr|A0A7D6ZXD3|A0A7D6ZXD3_9CLOTHemesensorproteinHssSOS=ClostridiumintestinaleOX=36845GN=HZF06_12880PE=4SV=1	tr|A0A7D6ZXD3|A0A7D6ZXD3_9CLOTHemesensorproteinHssSOS=ClostridiumintestinaleOX=36845GN=HZF06_12880PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	444.2504577636719	2	443.789653	885.564752	1.3528	0.00060037	-1.4083	-0.00062501	-0.055524	-2.4641E-05	443.788971935392	64.258	0.94716	61.533	61.234	62.181	-2.7246					32	17	2	0	0	0	0.028476	1	4955	4955		11.511	0	1	64141			23609	35874	19295	19318	26298	26298					0.11739252173845216
KITAKEKLQ	9	Unmodified	_KITAKEKLQ_					0	0	0			REV__ENST00000474269.5_1_7:8010111-8064431:+|nuORF	REV__ENST00000474269.5_1_7:8010111-8064431:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.331787109375	2	529.832049	1057.64954	3.1683	0.0016787	-3.7338	-0.0019783	-0.56553	-0.00029964	529.8320961796451	131.94	1.8053	130.44	130.12	131.93	-1.5014					94	35	5	0	0	0	0.60342	1	12709	12709		31.53	4.8369	1	145640	+		23610	26344	19296	19319	26299	26299					0.12302577919808755
KITALDEFATK	11	Unmodified	_KITALDEFATK_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;SPTAN1|p.Q1734Rfs*19|1|0.63|ENSG00000197694|chr9:128615697-128615725|CCAAGTAAAGGACAAGAGGGACACCATCA/-|frameshift_variant;SPTAN1|p.M1752Ifs*16|1|0.07|ENSG00000197694|chr9:128615752-128615753|-/TTCCTGAGTTCTTATG|frameshift_variant;SPTAN1|p.C956Afs*33|1|0.61|ENSG00000197694|chr9:128587691-128587691|C/-|frameshift_variant	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	619.8142700195312	2	618.845353	1235.67615	-0.77644	-0.0004805	0.78719	0.00048715	0.010748	6.6511E-06	618.8455252635956	70.372	0.43292	70.372	70.17	70.603	0					23	10	3	0	0	0	0.02558	1	6730	6730		14.694	0	1	677160			23611	8736	19297	19320	26300	26300					0.06774222020453635
KITDAGYRLY	10	Unmodified	_KITDAGYRLY_					0	0	0		tr|A0A7D6VMI1|A0A7D6VMI1_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13830PE=4SV=1	tr|A0A7D6VMI1|A0A7D6VMI1_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13830PE=4SV=1	tr|A0A7D6VMI1|A0A7D6VMI1_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13830PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	600.3223266601562	2	600.324588	1198.63462	-2.8982	-0.0017399	0.96892	0.00058166	-1.9293	-0.0011582	600.3250269871453	152.11	1.1286	150.68	150.36	151.49	-1.435					68	24	4	0	0	0	0.7759	1	15072	15072		21.96	1.9631	1	134150			23612	34657	19298	19321	26301	26301					0.04325086051812832
KITDHSITLK	10	Unmodified	_KITDHSITLK_					0	0	0		tr|A0A7D6W298|A0A7D6W298_9CLOTTranscriptionalrepressorOS=ClostridiumintestinaleOX=36845GN=HZF06_05610PE=3SV=1	tr|A0A7D6W298|A0A7D6W298_9CLOTTranscriptionalrepressorOS=ClostridiumintestinaleOX=36845GN=HZF06_05610PE=3SV=1	tr|A0A7D6W298|A0A7D6W298_9CLOTTranscriptionalrepressorOS=ClostridiumintestinaleOX=36845GN=HZF06_05610PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	579.3226928710938	2	578.340238	1154.66592	-1.7475	-0.0010107	2.5537	0.0014769	0.80612	0.00046621	578.3418619458516	50.591	0.61617	47.418	47.256	47.872	-3.1734					15	11	2	0	0	0	0.026494	1	2911	2911		33.922	0	1	19503			23613	35423	19299	19322	26302	26302					0.09477659085882806
KITDLKQKV	9	Unmodified	_KITDLKQKV_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	OvCa99_classI_Rep5	1	536.8406982421875	2	536.839874	1071.66519	-0.11076	-5.9459E-05	-0.27211	-0.00014608	-0.38286	-0.00020554	536.8395820625976	43.078	0.47016	43.078	42.883	43.353	0					28	10	4	0	0	0	0.066102	1	2813	2813		109.48	13.288	1	1634800			23614	9513	19300	19323	26303	26303					0.13222864436852433
KITFRTPLY	9	Unmodified	_KITFRTPLY_					0	0	0		EGFLAM|p.S615Yfs*24|1|0.07|ENSG00000164318|chr5:38427041-38427042|-/A|frameshift_variant;EGFLAM|p.I639Tfs*73|1|0.4|ENSG00000164318|chr5:38427111-38427126|AGATCACATTTCGGCC/-|frameshift_variant;nc|ENSG00000164318|Q63HQ2-4|EGFLAM;ENSG00000164318|ENST00000322350|EGFLAM;nc|ENSG00000164318|Q63HQ2|EGFLAM	EGFLAM|p.S615Yfs*24|1|0.07|ENSG00000164318|chr5:38427041-38427042|-/A|frameshift_variant	EGFLAM|p.S615Yfs*24|1|0.07|ENSG00000164318|chr5:38427041-38427042|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	569.8352661132812	2	569.834591	1137.65463	-0.6563	-0.00037398	-0.12934	-7.3703E-05	-0.78564	-0.00044768	569.8345222869018	99.284	4.3485	97.599	97.322	101.67	-1.685					272	84	6	0	0	0	0.21231	1	6706	6706		74.255	1.3758	1	12084000			23615	782	19301	19324	26304	26304					0.09130881782425604
KITKDILKVL	10	Unmodified	_KITKDILKVL_					0	0	0		MED12|p.K1768Qfs*3|1|0.17|ENSG00000184634|chrX:71136550-71136551|-/C|frameshift_variant;nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	MED12|p.K1768Qfs*3|1|0.17|ENSG00000184634|chrX:71136550-71136551|-/C|frameshift_variant	MED12|p.K1768Qfs*3|1|0.17|ENSG00000184634|chrX:71136550-71136551|-/C|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.3397827148438	2	585.894649	1169.77475	0.036287	2.126E-05	-3.405	-0.001995	-3.3687	-0.0019737	586.3923448660053	71.831	0.28806	71.831	71.668	71.956	0					9	6	2	0	0	0	0.027088	1	6962	6962		19.997	9.1312	1	335270			23616	8177	19302	19325	26305	26305					0.19664870056180916
KITKKMQIK	9	Unmodified	_KITKKMQIK_					0	0	0			REV__ENST00000451818.2_1_1:203626546-203626750:-|nuORF	REV__ENST00000451818.2_1_1:203626546-203626750:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	559.33349609375	2	559.359919	1116.70529	0.0024825	1.3886E-06	-3.6044	-0.0020161	-3.6019	-0.0020147	559.3586340522527	104.92	0.59153	104.34	104.17	104.76	-0.57639					19	11	3	0	0	0	0.027425	1	9753	9753		60.118	3.3972	1	49844	+		23617	20980	19303	19326	26306	26306					0.1516008783576126
KITKKYFK	8	Unmodified	_KITKKYFK_					0	0	0			REV__tr|A0A553SM39|A0A553SM39_NIACICopperresistanceproteinOS=NialliacirculansOX=1397GN=CEQ21_21855PE=4SV=1	REV__tr|A0A553SM39|A0A553SM39_NIACICopperresistanceproteinOS=NialliacirculansOX=1397GN=CEQ21_21855PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.3434448242188	2	528.334227	1054.6539	-1.2569	-0.00066406	-2.1689	-0.0011459	-3.4258	-0.0018099	528.3327036128256	69.94	0.89076	69.94	69.712	70.603	0					28	21	2	0	0	0	0.028476	1	6714	6714		24.203	0	1	1197000	+		23618	30291	19304	19327	26307	26307					0.12876087133349756
KITKMIVPI	9	Unmodified	_KITKMIVPI_					0	0	0			REV__tr|A0A7D6VRU4|A0A7D6VRU4_9CLOTDNA-(apurinicorapyrimidinicsite)lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20295PE=3SV=1	REV__tr|A0A7D6VRU4|A0A7D6VRU4_9CLOTDNA-(apurinicorapyrimidinicsite)lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20295PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.305908203125	2	521.838288	1041.66202	2.0876	0.0010894	1.963	0.0010244	4.0505	0.0021137	521.8386411214202	89.562	0.2472	88.26	88.087	88.334	-1.302					7	4	2	0	0	0	0.027462	1	7870	7870		31.955	6.3808	1	7379.8	+		23619	31445	19305	19328	26308	26308					0.14285898058483326
KITKTGQEQL	10	Unmodified	_KITKTGQEQL_					0	0	0			REV__CON__Q922U2	REV__CON__Q922U2	MULTI-MSMS	OvCa99_classI_Rep5	1	573.330810546875	2	573.32987	1144.64519	-0.98009	-0.00056191	0.55776	0.00031978	-0.42232	-0.00024213	573.3300731139313	34.951	0.42588	34.951	34.772	35.198	0					21	8	4	0	0	0	0.34811	1	1728	1728		75.043	5.4157	1	366970	+	+	23620	16222	19306	19329	26309	26309					0.07865068706246348
KITLIDKQISL	11	Unmodified	_KITLIDKQISL_					0	0	0			REV__nc|ENSG00000128052|P35968-2|KDR	REV__nc|ENSG00000128052|P35968-2|KDR	MULTI-MSMS	OvCa9_classI_Rep3	3	636.3978881835938	2	636.400295	1270.78604	-6.5368	-0.00416	3.4591	0.0022014	-3.0777	-0.0019586	636.4023674987772	159.22	1.0639	157.95	157.66	158.73	-1.267					49	20	4	0	0	0	0.72479	1	13771	13771		18.262	0.79408	1	88247	+		23621	18839	19307	19330	26310	26310					0.16147647359662187
KITLLKDD	8	Unmodified	_KITLLKDD_					0	0	0		tr|A0A553SNA1|A0A553SNA1_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24080PE=4SV=1	tr|A0A553SNA1|A0A553SNA1_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24080PE=4SV=1	tr|A0A553SNA1|A0A553SNA1_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24080PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.2998046875	2	473.2844	944.554247	-0.17303	-8.1892E-05	-2.1882	-0.0010356	-2.3612	-0.0011175	473.28417582587895	42.818	0.26174	42.818	42.665	42.926	0					8	5	2	0	0	0	0.028476	1	2774	2774		6.7355	0	1	60897			23622	33911	19308	19331	26311	26311					0.07975224728750163
KITLMQEGS	9	Unmodified	_KITLMQEGS_					0	0	0			REV__ENSG00000186487|ENST00000647738|MYT1L	REV__ENSG00000186487|ENST00000647738|MYT1L	MULTI-SECPEP	OvCa9_classI_Rep2	2	504.2796936035156	2	503.765517	1005.51648	-1.6435	-0.00082794	1.4384	0.00072461	-0.20511	-0.00010333	503.76615428037167	50.398	1.2398	47.604	47.281	48.521	-2.794					45	24	4	0	0	0	0.027446	1	3281	3281		35.152	4.8343	1	76799	+		23623	22592	19309	19332	26312	26312					0.013943904716484212
KITLNRVF	8	Unmodified	_KITLNRVF_					0	0	0			REV__ENST00000554383.5_3_14:21702260-21737544:-|nuORF	REV__ENST00000554383.5_3_14:21702260-21737544:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.80621337890625	2	495.808377	989.6022	-0.52816	-0.00026187	-3.8599	-0.0019138	-4.388	-0.0021756	495.80638684951504	144.26	1.4618	142.83	142.48	143.94	-1.4357					68	27	4	0	0	0	0.75241	1	14127	14127		25.45	0	1	117760	+		23624	27527	19310	19333	26313	26313					0.10698343439469227
KITMNFSFL	9	Unmodified	_KITMNFSFL_					0	0	0			REV__ENSG00000197653|ENST00000673944|DNAH10	REV__ENSG00000197653|ENST00000673944|DNAH10	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.7928466796875	2	550.794078	1099.5736	1.258	0.0006929	0.21768	0.00011989	1.4757	0.00081279	550.7942782513085	67.623	1.2749	64.133	63.789	65.064	-3.4902					69	25	4	0	0	0	0.3249	1	4972	4972		60.118	1.8883	1	804180	+		23625	22941	19311	19334	26314	26314					0.027798577480325548
KITRNFYV	8	Unmodified	_KITRNFYV_					0	0	0		ENSG00000267673|ENST00000393708|FDX2	ENSG00000267673|ENST00000393708|FDX2	ENSG00000267673|ENST00000393708|FDX2	MULTI-MSMS	OvCa9_classI_Rep2	2	520.7977294921875	2	520.798009	1039.58147	-2.3393	-0.0012183	1.8465	0.00096167	-0.49275	-0.00025662	520.7988321454784	36.331	1.3811	33.621	33.4	34.781	-2.7097					74	27	4	0	0	0	0.74229	1	1573	1573		30.504	0.18592	1	644080			23626	9534	19312	19335	26315	26315					0.06325753059786621
KITSDKFR	8	Unmodified	_KITSDKFR_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-4|CNOT1	REV__nc|ENSG00000125107|A5YKK6-4|CNOT1	MULTI-MSMS	OvCa9_classI_Rep2	2	497.7864990234375	2	497.787641	993.56073	-0.11038	-5.4945E-05	0.11227	5.5885E-05	0.0018873	9.3948E-07	497.7875261142517	66.888	0.9423	64.227	63.85	64.793	-2.661					53	18	4	0	0	0	0.66992	1	5209	5209		49.442	5.0644	1	291090	+		23627	18713	19313	19336	26316	26316					0.06369162680141471
KITSEIPQT	9	Unmodified	_KITSEIPQT_					0	0	0		ENSG00000205323|ENST00000336133|SARNP;ENST00000552207.1_1_12:56188062-56211500:-|nuORF;chr12:55794878-55796025|161|20.57|0.0|20.97|-|0|None,SARNP|1	ENSG00000205323|ENST00000336133|SARNP	ENSG00000205323|ENST00000336133|SARNP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.2989501953125	2	508.784764	1015.55498	-0.68682	-0.00034944	-0.61039	-0.00031056	-1.2972	-0.00066	508.7829804794307	40.114	0.44933	37.16	36.814	37.263	-2.9541					14	8	2	0	0	0	0.027462	1	1677	1677		45.972	10.354	1	52134			23628	9064	19314	19337	26317	26317					0.04782019377796587
KITSELSEAN	10	Unmodified	_KITSELSEAN_					0	0	0		RIF1|p.L2186Qfs*51|1|0.07|ENSG00000080345|chr2:151466077-151466077|T/-|frameshift_variant;nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	RIF1|p.L2186Qfs*51|1|0.07|ENSG00000080345|chr2:151466077-151466077|T/-|frameshift_variant	RIF1|p.L2186Qfs*51|1|0.07|ENSG00000080345|chr2:151466077-151466077|T/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.7926635742188	2	546.282586	1090.55062	1.6514	0.00090216	-1.0993	-0.00060053	0.55215	0.00030163	546.283408544237	90.614	0.71606	90.614	90.382	91.098	0					32	17	3	0	0	0	0.026734	1	9700	9700		31.53	0	1	1359000			23629	1634	19315	19338	26318	26318					0.008965101642388618
KITSLIDALG	10	Unmodified	_KITSLIDALG_					0	0	0		ENST00000560723.5_1_15:81605599-81615081:-|nuORF	ENST00000560723.5_1_15:81605599-81615081:-|nuORF	ENST00000560723.5_1_15:81605599-81615081:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.294189453125	2	515.810782	1029.60701	-0.1487	-7.6703E-05	-4.1603	-0.0021459	-4.309	-0.0022226	515.8081696061935	32.756	0.19325	32.756	32.651	32.844	0					5	3	2	0	0	0	0.027028	1	1445	1445		31.53	8.4873	1	39811			23630	13740	19316	19339	26319	26319					0.09339182791563871
KITTRRLAGD	10	Unmodified	_KITTRRLAGD_					0	0	0			REV__nc|ENSG00000141837|O00555-5|CACNA1A	REV__nc|ENSG00000141837|O00555-5|CACNA1A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.3075561523438	2	565.835654	1129.65676	0.14239	8.0569E-05	2.8942	0.0016377	3.0366	0.0017182	565.8371480753262	99.615	0.91624	97.289	96.951	97.867	-2.3253					30	17	2	0	0	0	0.02717	1	8850	8850		23.523	2.5758	1	43673	+		23631	28898	19317	19340	26320	26320					0.0971131052021974
KITTRRLAGD	10	Unmodified	_KITTRRLAGD_					0	0	0			REV__nc|ENSG00000141837|O00555-5|CACNA1A	REV__nc|ENSG00000141837|O00555-5|CACNA1A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	565.835654	1129.65676	-0.38059	-0.00021535	3.2407	0.0018337	2.8601	0.0016184	565.8375866422182	99.091	0.97618	97.406	97.009	97.985	-1.685	0.0583	0.00021594	NaN	28.081	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44359	+		23632	28898	19317	19340							0.0971131052021974
KIVAPKKIK	9	Unmodified	_KIVAPKKIK_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.7938232421875	2	512.865695	1023.71684	-1.151	-0.00059029	0.98048	0.00050286	-0.17049	-8.7439E-05	512.866053616115	42.686	0.78659	39.701	39.509	40.295	-2.985					30	14	3	0	0	0	0.027462	1	2002	2002		10.866	3.6722	1	44625			23633	3337	19318	19341	26321	26321					0.20592652921402532
KIVAPKKIK	9	Unmodified	_KIVAPKKIK_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-MATCH	OvCa9_classI_Rep2	2		2	512.865695	1023.71684	0.89941	0.00046128	-1.0269	-0.00052666	-0.12747	-6.5377E-05	512.865034154742	42.516	0.98692	39.806	39.522	40.509	-2.7097	0.052634	-0.00097541	NaN	10.866	34	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40654			23634	3337	19318	19341							0.20592652921402532
KIVAPSVLCLS	11	Unmodified	_KIVAPSVLCLS_					0	0	0		tr|A0A7D6VRN2|A0A7D6VRN2_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12850PE=4SV=1	tr|A0A7D6VRN2|A0A7D6VRN2_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12850PE=4SV=1	tr|A0A7D6VRN2|A0A7D6VRN2_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12850PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	566.3121337890625	2	565.33611	1128.65767	0.36586	0.00020683	-3.5958	-0.0020328	-3.23	-0.001826	565.3339553717586	106.22	1.0846	104.2	103.95	105.03	-2.0161					50	20	4	0	0	0	0.025457	1	9725	9725		16.717	0	1	220560			23635	34945	19319	19342	26322	26322					0.09848388844920919
KIVAVGITL	9	Unmodified	_KIVAVGITL_					0	0	0		tr|A0A553SR03|A0A553SR03_NIACIPepSYdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00085PE=4SV=1	tr|A0A553SR03|A0A553SR03_NIACIPepSYdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00085PE=4SV=1	tr|A0A553SR03|A0A553SR03_NIACIPepSYdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00085PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	457.7701110839844	2	457.307678	912.600803	-0.31017	-0.00014184	-0.076312	-3.4898E-05	-0.38649	-0.00017674	457.30740389927735	79.506	1.3034	76.754	76.37	77.673	-2.7514					54	26	3	0	0	0	0.027462	1	6527	6527		9.1829	0	1	75118			23636	34213	19320	19343	26323	26323					0.14100709350691432
KIVEGDLDEDL	11	Unmodified	_KIVEGDLDEDL_					0	0	0		nc|ENSG00000171962|Q9H069-2|DRC3;ENSG00000171962|ENST00000399187|DRC3	nc|ENSG00000171962|Q9H069-2|DRC3	nc|ENSG00000171962|Q9H069-2|DRC3	MULTI-MSMS	OvCa99_classI_Rep5	1	623.31298828125	2	623.314083	1244.61361	0.53547	0.00033377	-0.84123	-0.00052435	-0.30575	-0.00019058	623.3134307191178	140.37	0.66309	140.37	140.12	140.78	0					29	13	3	0	0	0	0.51772	1	16405	16405		60.118	12.159	1	147450			23637	7255	19321	19344	26324	26324					0.0010903116162808146
KIVEIDAHI	9	Unmodified	_KIVEIDAHI_					0	0	0		ENST00000484563.1_1_1:109955653-109968973:-|nuORF;nc|ENSG00000143106|P28066-2|PSMA5;ENSG00000143106|ENST00000271308|PSMA5	ENST00000484563.1_1_1:109955653-109968973:-|nuORF	ENST00000484563.1_1_1:109955653-109968973:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	519.3033447265625	2	519.303124	1036.5917	1.7317	0.00089929	0.22059	0.00011455	1.9523	0.0010138	519.3031386676784	77.099	0.66498	77.099	76.757	77.422	0					34	15	3	0	0	0	0.035142	1	7754	7754		131.03	37.836	1	1519900			23638	5011	19322	19345	26325	26325					0.07486315994356119
KIVFWLGYL	9	Unmodified	_KIVFWLGYL_					0	0	0		nc|ENSG00000120907|P35348-3|ADRA1A;nc|ENSG00000120907|P35348-4|ADRA1A;ENSG00000120907|ENST00000380573|ADRA1A;nc|ENSG00000120907|P35348-2|ADRA1A	nc|ENSG00000120907|P35348-3|ADRA1A	nc|ENSG00000120907|P35348-3|ADRA1A	MULTI-MSMS	OvCa9_classI_Rep4_	4	569.835693359375	2	569.836603	1137.65865	-0.75134	-0.00042814	-3.579	-0.0020394	-4.3303	-0.0024676	569.8345397385756	99.869	5.0637	97.543	97.212	102.28	-2.3253					291	98	6	0	0	0	0.30002	1	9026	9026		62.978	4.7485	1	9449400			23639	3459	19323	19346	26326	26326					0.09532971276121316
KIVFYKNK	8	Unmodified	_KIVFYKNK_					0	0	0		tr|A0A7D6VRN8|A0A7D6VRN8_9CLOTWingedhelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07645PE=4SV=1	tr|A0A7D6VRN8|A0A7D6VRN8_9CLOTWingedhelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07645PE=4SV=1	tr|A0A7D6VRN8|A0A7D6VRN8_9CLOTWingedhelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07645PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.8349609375	2	520.318577	1038.6226	-0.4955	-0.00025782	-3.6226	-0.0018849	-4.1181	-0.0021427	520.3162756781364	30.981	0.62905	30.981	30.781	31.41	0					16	6	4	0	0	0	0.028476	1	1229	1229		24.203	0	1	214380			23640	34947	19324	19347	26327	26327					0.1048351409924635
KIVGGLIEL	9	Unmodified	_KIVGGLIEL_					0	0	0		nc|ENSG00000109083|Q8IY31-4|IFT20;ENST00000322326.12_1_17:26657393-26659262:-|nuORF;ENSG00000109083|ENST00000395418|IFT20;ENST00000582797.5_1_17:26657393-26662483:-|nuORF;nc|ENSG00000109083|Q8IY31-3|IFT20;nc|ENSG00000109083|Q8IY31-2|IFT20	nc|ENSG00000109083|Q8IY31-4|IFT20	nc|ENSG00000109083|Q8IY31-4|IFT20	MULTI-SECPEP	OvCa9_classI_Rep2	2	472.2940673828125	2	471.305136	940.595718	-0.50551	-0.00023825	0.18092	8.5271E-05	-0.32459	-0.00015298	471.3051151435695	94.501	1.3325	93.401	93.062	94.395	-1.0995					36	26	2	0	0	0	0.027433	1	8494	8494		34.173	1.3601	1	32106			23641	2696	19325	19348	26328	26328					0.12304405488077919
KIVGGLIEL	9	Unmodified	_KIVGGLIEL_					0	0	0		nc|ENSG00000109083|Q8IY31-4|IFT20;ENST00000322326.12_1_17:26657393-26659262:-|nuORF;ENSG00000109083|ENST00000395418|IFT20;ENST00000582797.5_1_17:26657393-26662483:-|nuORF;nc|ENSG00000109083|Q8IY31-3|IFT20;nc|ENSG00000109083|Q8IY31-2|IFT20	nc|ENSG00000109083|Q8IY31-4|IFT20	nc|ENSG00000109083|Q8IY31-4|IFT20	MULTI-MATCH	OvCa99_classI_Rep5	1		2	471.305136	940.595718	1.7243	0.00081267	0.66658	0.00031416	2.3909	0.0011268	471.30525317679513	93.267	0.33372	93.267	93.053	93.386	0	-0.13181	0.00065828	NaN	34.173	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	268190			23642	2696	19325	19348							0.12304405488077919
KIVGKRYLQ	9	Unmodified	_KIVGKRYLQ_					0	0	0			REV__ENSG00000172543|ENST00000307886|CTSW	REV__ENSG00000172543|ENST00000307886|CTSW	MULTI-MSMS	OvCa99_classI_Rep5	1	552.84814453125	2	552.848033	1103.68151	-0.49335	-0.00027275	0.14604	8.0738E-05	-0.34731	-0.00019201	552.8480128304551	40.454	0.7225	40.454	40.247	40.969	0					39	15	4	0	0	0	0.31747	1	2455	2455		60.972	2.19	1	1010800	+		23643	21710	19326	19349	26329	26329					0.13381990393577325
KIVGRRKSE	9	Unmodified	_KIVGRRKSE_					0	0	0		ENST00000368170.7_1_1:158259701-158259827:+|nuORF	ENST00000368170.7_1_1:158259701-158259827:+|nuORF	ENST00000368170.7_1_1:158259701-158259827:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.8494262695312	2	536.832914	1071.65128	0.35996	0.00019324	3.1465	0.0016892	3.5065	0.0018824	536.8343895952904	84.892	0.82381	82.245	81.931	82.755	-2.6463					32	16	3	0	0	0	0.027462	1	7145	7145		27.882	0	1	62671			23644	10863	19327	19350	26330	26330					0.11831631728409775
KIVGYKATY	9	Unmodified	_KIVGYKATY_					0	0	0		tr|A0A7D6ZQ78|A0A7D6ZQ78_9CLOTSigma-54-dependentFisfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23295PE=4SV=1	tr|A0A7D6ZQ78|A0A7D6ZQ78_9CLOTSigma-54-dependentFisfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23295PE=4SV=1	tr|A0A7D6ZQ78|A0A7D6ZQ78_9CLOTSigma-54-dependentFisfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23295PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.2733764648438	2	521.800217	1041.58588	-1.2147	-0.00063381	-3.4937	-0.001823	-4.7084	-0.0024568	521.7980980071796	73.67	0.85562	70.274	69.979	70.834	-3.3961					27	17	3	0	0	0	0.027462	1	5711	5711		26.693	3.6504	1	148150			23645	35698	19328	19351	26331	26331					0.0667521748271156
KIVGYKATY	9	Unmodified	_KIVGYKATY_					0	0	0		tr|A0A7D6ZQ78|A0A7D6ZQ78_9CLOTSigma-54-dependentFisfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23295PE=4SV=1	tr|A0A7D6ZQ78|A0A7D6ZQ78_9CLOTSigma-54-dependentFisfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23295PE=4SV=1	tr|A0A7D6ZQ78|A0A7D6ZQ78_9CLOTSigma-54-dependentFisfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23295PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.800217	1041.58588	0.46822	0.00024432	-5.5411	-0.0028913	-5.0728	-0.002647	521.7972039564314	72.586	1.0438	70.186	69.592	70.636	-2.3999	-0.04389	-0.0016485	NaN	26.693	33	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43348			23646	35698	19328	19351							0.0667521748271156
KIVIDNPLI	9	Unmodified	_KIVIDNPLI_					0	0	0			REV__tr|A0A553SS88|A0A553SS88_NIACI2,3-butanedioldehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_02645PE=3SV=1	REV__tr|A0A553SS88|A0A553SS88_NIACI2,3-butanedioldehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_02645PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.8200073242188	2	512.823692	1023.63283	2.4146	0.0012383	-0.37583	-0.00019274	2.0388	0.0010456	512.8234027393097	80.281	0.5398	80.281	80.031	80.571	0					23	12	2	0	0	0	0.027403	1	8251	8251		79.713	24.936	1	354410	+		23647	30812	19329	19352	26332	26332					0.12196077033843267
KIVIHTIEP	9	Unmodified	_KIVIHTIEP_					0	0	0			REV__ENSG00000162434|ENST00000342505|JAK1	REV__ENSG00000162434|ENST00000342505|JAK1	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.7838134765625	2	525.321317	1048.62808	-0.049796	-2.6159E-05	-0.54636	-0.00028701	-0.59615	-0.00031317	525.3208544903762	97.484	1.3245	96.526	96.118	97.442	-0.95857					69	26	4	0	0	0	0.027462	1	8868	8868		30.504	0	1	260060	+		23648	20735	19330	19353	26333	26333					0.1057119289109778
KIVITNTLV	9	Unmodified	_KIVITNTLV_					0	0	0		tr|A0A7D6VQM6|A0A7D6VQM6_9CLOTPolysaccharidebiosynthesisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21740PE=4SV=1	tr|A0A7D6VQM6|A0A7D6VQM6_9CLOTPolysaccharidebiosynthesisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21740PE=4SV=1	tr|A0A7D6VQM6|A0A7D6VQM6_9CLOTPolysaccharidebiosynthesisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21740PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.79522705078125	2	500.823692	999.632832	-0.31273	-0.00015662	-1.3835	-0.00069289	-1.6962	-0.00084951	500.8235571889168	109.97	0.52423	108.82	108.61	109.14	-1.1444					14	9	2	0	0	0	0.027462	1	7904	7904		16.473	6.2079	1	10644			23649	34859	19331	19354	26334	26334					0.1330007703385263
KIVKFTPVSL	10	Unmodified	_KIVKFTPVSL_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-7|BLTP1;REV__nc|ENSG00000138688|Q2LD37-6|BLTP1	REV__nc|ENSG00000138688|Q2LD37-6|BLTP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.3614501953125	2	566.360442	1130.70633	-0.29824	-0.00016891	0.4014	0.00022734	0.10316	5.8425E-05	566.3604606947199	100.45	0.96741	98.185	97.825	98.792	-2.2665					58	18	4	0	0	0	0.50999	1	8980	8980		52.937	0	1	327330	+		23650	19560;28886	19332	19355	26335	26335					0.1462062547630012
KIVKKSNPL	9	Unmodified	_KIVKKSNPL_					0	0	0			REV__tr|A0A7D7A0W6|A0A7D7A0W6_9CLOTNAD(P)H-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12895PE=4SV=1	REV__tr|A0A7D7A0W6|A0A7D7A0W6_9CLOTNAD(P)H-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12895PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	513.8367919921875	2	513.837134	1025.65972	0.55607	0.00028573	-0.83889	-0.00043105	-0.28282	-0.00014532	513.8366888143955	111.95	1.0842	111.81	111.47	112.56	-0.13961					55	21	4	0	0	0	0.33652	1	10583	10583		58.782	2.0609	1	179270	+		23651	32460	19333	19356	26336	26336					0.14791185645026417
KIVKRPSLQ	9	Unmodified	_KIVKRPSLQ_					0	0	0		ENSG00000154007|ENST00000284142|ASB17	ENSG00000154007|ENST00000284142|ASB17	ENSG00000154007|ENST00000284142|ASB17	MULTI-MSMS	OvCa9_classI_Rep2	2	534.84716796875	2	534.848033	1067.68151	-1.2741	-0.00068147	0.73507	0.00039315	-0.53906	-0.00028832	534.8483651209563	46.243	2.4803	43.534	43.048	45.529	-2.7097					129	49	4	0	0	0	0.10363	4	2739	2721;2739;2751;2783		96.19	14.667	1	907090			23652	5707	19334	19357	26337;26338;26339;26340	26338					0.1503799039360274
KIVKRRKI	8	Unmodified	_KIVKRRKI_					0	0	0			REV__nc|ENSG00000109670|Q969H0-4|FBXW7	REV__nc|ENSG00000109670|Q969H0-4|FBXW7	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.3101196289062	2	520.874385	1039.73422	0.37173	0.00019363	-4.273	-0.0022257	-3.9013	-0.0020321	520.8723243630086	83.036	0.22895	81.438	81.321	81.55	-1.5988					7	4	2	0	0	0	0.028476	1	7107	7107		12.959	0	1	84773	+		23653	17939	19335	19358	26341	26341					0.2159399324707465
KIVKVGVLNN	10	Unmodified	_KIVKVGVLNN_					0	0	0			REV__ENSG00000143816|ENST00000272164|WNT9A	REV__ENSG00000143816|ENST00000272164|WNT9A	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.285888671875	2	542.347866	1082.68118	-0.70957	-0.00038483	0.13123	7.1172E-05	-0.57834	-0.00031366	542.3474314639034	51.921	0.38161	51.921	51.788	52.17	0					12	8	2	0	0	0	0.026994	1	4027	4027		25.574	3.6142	1	74009	+		23654	19870	19336	19359	26342	26342					0.14314570673764138
KIVLDLKEL	9	Unmodified	_KIVLDLKEL_					0	0	0			REV__nc|ENSG00000135945|Q9UBZ9-2|REV1	REV__nc|ENSG00000135945|Q9UBZ9-2|REV1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.7684936523438	2	535.844625	1069.6747	1.9928	0.0010678	3.3998	0.0018218	5.3926	0.0028896	535.8468487071185	112.81	0.13434	112.81	112.74	112.88	0					4	2	2	0	0	0	0.027462	1	12840	12840		23.042	0	1	42887	+		23655	19338	19337	19360	26343	26343					0.14264632722370152
KIVNGWQVEE	10	Unmodified	_KIVNGWQVEE_					0	0	0		ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	ENSG00000100994|ENST00000216962|PYGB	MULTI-SECPEP	OvCa9_classI_Rep2	2	601.2780151367188	2	601.31422	1200.61389	-0.73782	-0.00044366	-3.9665	-0.0023851	-4.7043	-0.0028288	601.3120296613931	64.491	1.1596	61.766	60.968	62.128	-2.7245					36	21	2	0	0	0	0.02698	1	4950	4950		36.447	8.5645	1	38982			23656	2131	19338	19361	26344	26344					0.021604956721375856
KIVNLKEK	8	Unmodified	_KIVNLKEK_					0	0	0		nc|ENSG00000171557|P02679-2|FGG;ENSG00000171557|ENST00000336098|FGG	nc|ENSG00000171557|P02679-2|FGG	nc|ENSG00000171557|P02679-2|FGG	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.31561279296875	2	486.316035	970.617516	0.28336	0.0001378	-0.5528	-0.00026884	-0.26945	-0.00013104	486.3156109319897	38.598	1.2396	35.672	35.305	36.544	-2.9264					57	24	4	0	0	0	0.26545	1	1522	1522		113.41	1.0007	1	169190			23657	7212	19339	19362	26345	26345					0.13103210236647556
KIVNLKEK	8	Unmodified	_KIVNLKEK_					0	0	0		nc|ENSG00000171557|P02679-2|FGG;ENSG00000171557|ENST00000336098|FGG	nc|ENSG00000171557|P02679-2|FGG	nc|ENSG00000171557|P02679-2|FGG	MULTI-MATCH	OvCa9_classI_Rep2	2		2	486.316035	970.617516	-1.3008	-0.00063261	1.3199	0.00064187	0.019054	9.2664E-06	486.3165991952646	38.451	0.79155	35.742	35.519	36.31	-2.7097	0.034797	0.0010599	NaN	113.41	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47633			23658	7212	19339	19362							0.13103210236647556
KIVQEELVPKQ	11	Unmodified	_KIVQEELVPKQ_					0	0	0			REV__nc|ENSG00000126777|Q86UP2-2|KTN1	REV__nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	437.2625427246094	3	437.594127	1309.76055	-1.3081	-0.00057244	-0.95612	-0.00041839	-2.2643	-0.00099083	437.5936907399087	50.226	1.3348	47.085	46.871	48.206	-3.1416					42	25	2	0	0	0	0.025271	1	2893	2893		53.597	18.101	1	267650	+		23659	18795	19340	19363	26346	26346					0.11806172837214035
KIVSELESF	9	Unmodified	_KIVSELESF_					0	0	0		tr|A0A553STU5|A0A553STU5_NIACIAsp/Glu/hydantoinracemaseOS=NialliacirculansOX=1397GN=CEQ21_05640PE=3SV=1	tr|A0A553STU5|A0A553STU5_NIACIAsp/Glu/hydantoinracemaseOS=NialliacirculansOX=1397GN=CEQ21_05640PE=3SV=1	tr|A0A553STU5|A0A553STU5_NIACIAsp/Glu/hydantoinracemaseOS=NialliacirculansOX=1397GN=CEQ21_05640PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.3167724609375	2	526.28714	1050.55973	1.7591	0.00092579	0.54296	0.00028575	2.3021	0.0012115	526.2872378929535	96.778	0.81069	96.778	96.543	97.353	0					30	18	2	0	0	0	0.027462	1	10646	10646		10.265	0.5596	1	1496700			23660	34535	19341	19364	26347	26347					0.03646903520575506
KIVSFKSI	8	Unmodified	_KIVSFKSI_					0	0	0		tr|A0A7D6ZZD9|A0A7D6ZZD9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19730PE=4SV=1	tr|A0A7D6ZZD9|A0A7D6ZZD9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19730PE=4SV=1	tr|A0A7D6ZZD9|A0A7D6ZZD9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19730PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	462.28839111328125	2	461.292028	920.569503	-1.1511	-0.000531	0.98317	0.00045353	-0.16794	-7.7468E-05	461.29240499198977	86.382	0.60242	84.162	83.835	84.437	-2.2204					16	11	2	0	0	0	0.028476	1	5094	5094		23.042	0	1	27993			23661	35957	19342	19365	26348	26348					0.10604136316624135
KIVVLLFPD	9	Unmodified	_KIVVLLFPD_					0	0	0			REV__ENST00000550386.5_1_12:44166747-44166840:+|nuORF	REV__ENST00000550386.5_1_12:44166747-44166840:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.2919921875	2	522.328611	1042.64267	-0.52911	-0.00027637	-3.9265	-0.0020509	-4.4556	-0.0023273	522.3262785476225	56.739	0.50202	56.739	56.459	56.961	0					19	11	3	0	0	0	0.027448	1	4732	4732		53.351	25.469	1	241580	+		23662	27474	19343	19366	26349	26349					0.12305265039231017
KIVYIKEL	8	Unmodified	_KIVYIKEL_					0	0	0		tr|A0A7D6VM88|A0A7D6VM88_9CLOTSegregationandcondensationproteinAOS=ClostridiumintestinaleOX=36845GN=scpAPE=3SV=1	tr|A0A7D6VM88|A0A7D6VM88_9CLOTSegregationandcondensationproteinAOS=ClostridiumintestinaleOX=36845GN=scpAPE=3SV=1	tr|A0A7D6VM88|A0A7D6VM88_9CLOTSegregationandcondensationproteinAOS=ClostridiumintestinaleOX=36845GN=scpAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.2418518066406	2	503.320786	1004.62702	-0.41829	-0.00021053	-2.5028	-0.0012597	-2.9211	-0.0014702	503.3194328859608	55.957	0.57866	55.957	55.599	56.178	0					15	13	2	0	0	0	0.028476	1	4609	4609		45.952	7.1458	1	143310			23663	34650	19344	19367	26350	26350					0.12488978522173966
KIWFYSFHGYG	11	Unmodified	_KIWFYSFHGYG_					0	0	0			REV__ENSG00000127995|ENST00000297273|CASD1	REV__ENSG00000127995|ENST00000297273|CASD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	469.8059387207031	3	468.896029	1403.66626	0.45036	0.00021117	4.266	0.0020003	4.7164	0.0022115	468.8980259742737	90.608	0.81872	88.033	87.65	88.469	-2.575					28	15	3	0	0	0	0.025911	1	7796	7796		31.634	13.103	1	33276	+		23664	18836	19345	19368	26351	26351					-0.019429211942679103
KIWIDKIL	8	Unmodified	_KIWIDKIL_					0	0	0		ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-2|ABCC4	ENSG00000125257|ENST00000645237|ABCC4	ENSG00000125257|ENST00000645237|ABCC4	MULTI-MSMS	OvCa99_classI_Rep5	1	514.82275390625	2	514.828778	1027.643	2.4418	0.0012571	-3.8211	-0.0019672	-1.3793	-0.0007101	514.826664500575	94.119	0.63424	94.119	93.841	94.475	0					33	14	3	0	0	0	0.61841	1	10236	10236		60.118	8.9256	1	1268400			23665	3695	19346	19369	26352	26352					0.13028684759092357
KIWNVHSV	8	Unmodified	_KIWNVHSV_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-MSMS	OvCa99_classI_Rep5	1	491.77508544921875	2	491.777077	981.5396	-0.87217	-0.00042891	-4.0917	-0.0020122	-4.9639	-0.0024411	491.77507441374826	33.943	1.9814	33.943	33.632	35.614	0					89	41	6	0	0	0	0.59148	1	1613	1613		65.803	17.888	1	6425600			23666	2012	19347	19370	26353	26353					0.04809197371287155
KIWRRVRKKFF	11	Unmodified	_KIWRRVRKKFF_					0	0	0			REV__ENSG00000118515|ENST00000367858|SGK1	REV__ENSG00000118515|ENST00000367858|SGK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.2340087890625	3	521.996412	1562.96741	-4.9638	-0.0025911	-2.5113	-0.0013109	-7.4751	-0.003902	521.995064721393	155.34	1.6894	153.85	152.79	154.48	-1.4911					53	42	2	0	0	0	0.026559	1	15429	15429		1.523	1.1516	1	9709	+		23667	18404	19348	19371	26354	26354					0.2084404996669491
KIWTVPNL	8	Unmodified	_KIWTVPNL_					0	0	0			REV__nc|ENSG849|O42043|ERVK-18_env	REV__nc|ENSG849|O42043|ERVK-18_env	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.7181701660156	2	485.789653	969.564752	-0.29523	-0.00014342	-2.7286	-0.0013255	-3.0238	-0.0014689	485.7881236464017	67.601	0.2747	67.601	67.448	67.723	0					10	6	2	0	0	0	0.028476	1	6312	6312		44.117	16.235	1	244710	+		23668	29234	19349	19372	26355	26355					0.07875252173846548
KIYDEMDGEAG	11	Unmodified	_KIYDEMDGEAG_					0	0	0		tr|A0A553SIA8|A0A553SIA8_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_14520PE=3SV=1	tr|A0A553SIA8|A0A553SIA8_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_14520PE=3SV=1	tr|A0A553SIA8|A0A553SIA8_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_14520PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	614.7670288085938	2	614.263536	1226.51252	1.0517	0.00064601	2.331	0.0014318	3.3826	0.0020778	614.2647466011917	156.65	1.0539	156.65	156.29	157.35	0					40	20	3	0	0	0	0.69808	1	18358	18358		30.318	0	1	141690			23669	33361	19350	19373	26356	26356					-0.09167743812736262
KIYEDLCR	8	Unmodified	_KIYEDLCR_					0	0	0		tr|A0A7D6VQC2|A0A7D6VQC2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02460PE=4SV=1	tr|A0A7D6VQC2|A0A7D6VQC2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02460PE=4SV=1	tr|A0A7D6VQC2|A0A7D6VQC2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02460PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	520.2673950195312	2	520.265684	1038.51682	0.40372	0.00021004	1.9995	0.0010403	2.4032	0.0012503	520.2665765593395	131.83	1.6957	131.83	131.25	132.94	0					116	35	4	0	0	0	0.6345	1	15277	15277		56.721	5.3856	1	1907800			23670	34838	19351	19374	26357	26357					-0.0009018980849759828
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENST00000454085.2_1_15:28141134-28141371:+|nuORF;ENSG00000122406|ENST00000370321|RPL5	ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENST00000454085.2_1_15:28141134-28141371:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	532.7861938476562	2	532.784764	1063.55498	0.031521	1.6794E-05	-0.35277	-0.00018795	-0.32125	-0.00017116	532.7845997903096	70.969	1.7607	70.969	70.447	72.208	0					103	43	3	0	0	0	0.056671	2	6838	6838;6868		114.89	24.525	1	58304000			23671	3529	19352	19375	26358;26359	26358					0.025740193778119647
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENST00000454085.2_1_15:28141134-28141371:+|nuORF;ENSG00000122406|ENST00000370321|RPL5	ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENST00000454085.2_1_15:28141134-28141371:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	532.7848510742188	2	532.784764	1063.55498	-1.0788	-0.00057479	0.30484	0.00016241	-0.77401	-0.00041238	532.7849580004024	73.009	3.1333	70.61	69.802	72.936	-2.3999					146	59	5	0	0	0	0.017173	9	5927	5915;5921;5927;5933;5939;5945;5951;5965;5971		150.36	27.613	1	1448000			23672	3529	19352	19375	26360;26361;26362;26363;26364;26365;26366;26367;26368	26362					0.025740193778119647
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENST00000454085.2_1_15:28141134-28141371:+|nuORF;ENSG00000122406|ENST00000370321|RPL5	ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENST00000454085.2_1_15:28141134-28141371:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	532.78466796875	2	532.784764	1063.55498	0.44689	0.0002381	-0.87747	-0.0004675	-0.43058	-0.00022941	532.7842757710703	72.943	2.2784	70.456	70.133	72.411	-2.4873					104	45	6	0	0	0	0.24899	1	3525	3525		68.846	4.6389	1	1035400			23673	3529	19352	19375	26369	26369					0.025740193778119647
KIYEGQVEV	9	Unmodified	_KIYEGQVEV_					0	0	0		ENST00000454085.2_1_15:28141134-28141371:+|nuORF;ENSG00000122406|ENST00000370321|RPL5	ENST00000454085.2_1_15:28141134-28141371:+|nuORF	ENST00000454085.2_1_15:28141134-28141371:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.7861328125	2	532.784764	1063.55498	-1.4749	-0.00078581	0.23571	0.00012558	-1.2392	-0.00066023	532.7849453419013	74.07	3.1583	70.839	70.241	73.399	-3.2308					173	65	5	0	0	0	0.017173	8	5773	5761;5773;5785;5797;5809;5822;5834;5861		150.36	41.872	1	6059100			23674	3529	19352	19375	26370;26371;26372;26373;26374;26375;26376;26377	26371					0.025740193778119647
KIYERLLK	8	Unmodified	_KIYERLLK_					0	0	0			REV__tr|A0A7D7A3F5|A0A7D7A3F5_9CLOTTyrosine-typerecombinase/integraseOS=ClostridiumintestinaleOX=36845GN=HZF06_13215PE=4SV=1	REV__tr|A0A7D7A3F5|A0A7D7A3F5_9CLOTTyrosine-typerecombinase/integraseOS=ClostridiumintestinaleOX=36845GN=HZF06_13215PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	531.8365478515625	2	531.837134	1061.65972	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.358	1	31.358	30.858	31.858	0								0	0	0	0.30129	1	1283	1283		87.754	0	1		+		23675	32583	19353	19376	26378	26378					0.1313518564502374
KIYFIAKG	8	Unmodified	_KIYFIAKG_					0	0	0			REV__tr|A0A7D6VSY9|A0A7D6VSY9_9CLOTDNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18580PE=4SV=1	REV__tr|A0A7D6VSY9|A0A7D6VSY9_9CLOTDNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18580PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.2562561035156	2	470.286746	938.558939	0.30679	0.00014428	-4.2554	-0.0020013	-3.9486	-0.001857	470.28425751793293	51.941	1.5617	48.768	48.123	49.685	-3.1734					45	30	3	0	0	0	0.028476	1	3050	3050		24.203	7.7296	1	148100	+		23676	31557	19354	19377	26379	26379					0.08720153662193297
KIYKQRSP	8	Unmodified	_KIYKQRSP_					0	0	0		nc|ENSG00000188848|Q6ZU67-5|BEND4;nc|ENSG00000188848|Q6ZU67-4|BEND4;nc|ENSG00000188848|Q6ZU67-2|BEND4;ENSG00000188848|ENST00000502486|BEND4	nc|ENSG00000188848|Q6ZU67-5|BEND4	nc|ENSG00000188848|Q6ZU67-5|BEND4	MULTI-SECPEP	OvCa9_classI_Rep3	3	511.2696228027344	2	510.303458	1018.59236	-0.50628	-0.00025835	0.1114	5.6848E-05	-0.39488	-0.00020151	510.30344965494095	88.87	2.558	86.739	86.265	88.823	-2.1309					101	50	3	0	0	0	0.028476	1	5396	5396		38.806	0	1	644980			23677	8510	19355	19378	26380	26380					0.08381155434096854
KIYKSPKA	8	Unmodified	_KIYKSPKA_					0	0	0			REV__ENSG00000196074|ENST00000357552|SYCP2	REV__ENSG00000196074|ENST00000357552|SYCP2	MULTI-MSMS	OvCa9_classI_Rep2	2	467.7895812988281	2	467.789653	933.564752	0.060124	2.8126E-05	-0.48203	-0.00022549	-0.42191	-0.00019736	467.7892957824747	44.579	2.0957	41.869	41.303	43.399	-2.7097					105	41	4	0	0	0	0.70469	1	2611	2611		42.396	6.7778	1	503650	+		23678	22780	19356	19379	26381	26381					0.09531252173849225
KIYLDKMIT	9	Unmodified	_KIYLDKMIT_					0	0	0		nc|ENSG00000137959|Q53G44-2|IFI44L;ENST00000486882.5_1_1:79093429-79094083:+|nuORF;IFI44L|p.R376Dfs*3|1|0.04|ENSG00000137959|chr1:78641098-78641098|A/-|frameshift_variant;ENSG00000137959|ENST00000370751|IFI44L	nc|ENSG00000137959|Q53G44-2|IFI44L	nc|ENSG00000137959|Q53G44-2|IFI44L	MULTI-MSMS	OvCa99_classI_Rep5	1	562.8245849609375	2	562.822835	1123.63112	-0.17896	-0.00010072	3.5496	0.0019978	3.3707	0.0018971	562.8247409165858	41.745	0.64936	41.745	41.55	42.199	0					32	14	4	0	0	0	0.18193	1	2635	2635		79.451	7.5735	1	1368800			23679	4639	19357	19380	26382	26382					0.0742469995357169
KIYNLLATL	9	Unmodified	_KIYNLLATL_					0	0	0		tr|A0A7D7A1T7|A0A7D7A1T7_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05665PE=4SV=1	tr|A0A7D7A1T7|A0A7D7A1T7_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05665PE=4SV=1	tr|A0A7D7A1T7|A0A7D7A1T7_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05665PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.7960815429688	2	524.823692	1047.63283	-2.1398	-0.001123	1.2689	0.00066596	-0.87085	-0.00045704	524.8240485411949	108.52	0.71196	106.79	106.57	107.28	-1.7256					21	13	2	0	0	0	0.027462	1	9988	9988		29.15	0	1	14910			23680	36048	19358	19381	26383	26383					0.11092077033868009
KIYQEFYQL	9	Unmodified	_KIYQEFYQL_					0	0	0			REV__tr|A0A553SKA6|A0A553SKA6_NIACILonproteaseOS=NialliacirculansOX=1397GN=lonPE=2SV=1	REV__tr|A0A553SKA6|A0A553SKA6_NIACILonproteaseOS=NialliacirculansOX=1397GN=lonPE=2SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	411.2178649902344	3	411.216768	1230.62847	3.1735	0.001305	-0.7631	-0.0003138	2.4104	0.00099121	411.21641858267037	82.791	0.55617	82.791	82.522	83.078	0					31	12	4	0	0	0	0.34132	1	8582	8582		58.23	1.7961	1	1177800	+		23681	30101	19359	19382	26384	26384					0.02238567820290882
KIYQEFYQL	9	Unmodified	_KIYQEFYQL_					0	0	0			REV__tr|A0A553SKA6|A0A553SKA6_NIACILonproteaseOS=NialliacirculansOX=1397GN=lonPE=2SV=1	REV__tr|A0A553SKA6|A0A553SKA6_NIACILonproteaseOS=NialliacirculansOX=1397GN=lonPE=2SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	411.216768	1230.62847	3.1735	0.001305	-0.7631	-0.0003138	2.4104	0.00099121	411.21641858267037	82.791	0.55617	82.791	82.522	83.078	0	0	0	NaN	58.23	31	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1177800	+		23682	30101	19359	19382							0.02238567820290882
KIYRYQKP	8	Unmodified	_KIYRYQKP_					0	0	0			REV__ENST00000491410.1_1_1:52305873-52344287:-|nuORF	REV__ENST00000491410.1_1_1:52305873-52344287:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.2861938476562	2	548.319109	1094.62366	1.9158	0.0010505	0.68456	0.00037536	2.6003	0.0014258	548.3193000720793	100.22	0.37627	100.22	100.03	100.4	0					11	8	2	0	0	0	0.028476	1	11124	11124		25.45	5.4534	1	234610	+		23683	17026	19360	19383	26385	26385					0.0801372846817685
KIYVVQPK	8	Unmodified	_KIYVVQPK_					0	0	0		nc|ENSG00000008294|O60271-9|SPAG9;nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;ENST00000511312.2_1_17:49054451-49060019:-|nuORF	nc|ENSG00000008294|O60271-9|SPAG9	nc|ENSG00000008294|O60271-9|SPAG9	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.7940368652344	2	487.805303	973.596052	-0.55857	-0.00027247	-1.1577	-0.00056472	-1.7162	-0.0008372	487.80470639513817	53.846	0.15757	53.846	53.733	53.891	0					5	3	2	0	0	0	0.028476	1	4307	4307		33.516	4.366	1	199420			23684	915	19361	19384	26386	26386					0.10819825207954636
KIYWQILKKDE	11	Unmodified	_KIYWQILKKDE_					0	0	0			REV__tr|A0A7D6W3A0|A0A7D6W3A0_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09425PE=3SV=1	REV__tr|A0A7D6W3A0|A0A7D6W3A0_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09425PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	488.2694396972656	3	488.61341	1462.8184	-0.63515	-0.00031034	-2.273	-0.0011106	-2.9082	-0.001421	488.6122235543627	71.173	0.38848	67.717	67.486	67.874	-3.4563					12	7	2	0	0	0	0.026033	1	5398	5398		22.562	0	1	13882	+		23685	31911	19362	19385	26387	26387					0.10550434762626537
KKAAAIRAKK	10	Unmodified	_KKAAAIRAKK_					0	0	0		ENSG00000179213|ENST00000601727|SIGLECL1	ENSG00000179213|ENST00000601727|SIGLECL1	ENSG00000179213|ENST00000601727|SIGLECL1	MULTI-MSMS	OvCa99_classI_Rep5	1	542.8668823242188	2	542.8693	1083.72405	-0.42066	-0.00022836	-0.42903	-0.00023291	-0.84969	-0.00046127	542.8689357393681	39.041	0.53956	39.041	38.836	39.376	0					25	11	4	0	0	0	0.67931	1	2276	2276		32.812	3.6629	1	432200			23686	7810	19363	19386	26388	26388					0.18553385521840937
KKAANLVKT	9	Unmodified	_KKAANLVKT_					0	0	0			REV__tr|A0A553SRB0|A0A553SRB0_NIACIEndo-beta-N-acetylglucosaminidaseOS=NialliacirculansOX=1397GN=CEQ21_00765PE=4SV=1	REV__tr|A0A553SRB0|A0A553SRB0_NIACIEndo-beta-N-acetylglucosaminidaseOS=NialliacirculansOX=1397GN=CEQ21_00765PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	486.81329345703125	2	486.813659	971.612765	-0.51721	-0.00025178	0.25856	0.00012587	-0.25865	-0.00012592	486.8136606093423	57.145	2.3904	54.353	53.634	56.024	-2.792					128	47	4	0	0	0	0.27001	1	4098	4098		66.429	0.96389	1	495540	+		23687	30714	19364	19387	26389	26389					0.12582326093888696
KKADAWLM	8	Unmodified	_KKADAWLM_					0	0	0			REV__ENST00000547877.5_1_12:51442859-51453215:+|nuORF	REV__ENST00000547877.5_1_12:51442859-51453215:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	481.7611999511719	2	481.760038	961.505523	-0.81941	-0.00039476	3.0449	0.0014669	2.2255	0.0010722	481.7613862197368	28.115	0.54811	28.115	27.891	28.439	0					19	10	3	0	0	0	0.73288	1	888	888		35.201	1.0282	1	200730	+		23688	27436	19365	19388	26390	26390					0.02323032888000398
KKAIMLSF	8	Unmodified	_KKAIMLSF_					0	0	0			REV__tr|A0A7D6W2P1|A0A7D6W2P1_9CLOTNucleotidyltransferasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06835PE=4SV=1	REV__tr|A0A7D6W2P1|A0A7D6W2P1_9CLOTNucleotidyltransferasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06835PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.25726318359375	2	469.280606	936.546659	0.30518	0.00014321	2.0538	0.00096382	2.359	0.001107	469.2821215062429	57.605	0.33714	57.605	57.438	57.775	0					25	7	5	0	0	0	0.028476	1	4843	4843		30.504	0	1	350020	+		23689	31903	19366	19389	26391	26391					0.07584793927492228
KKAKDNLQAIE	11	Unmodified	_KKAKDNLQAIE_					0	0	0			REV__tr|A0A553SG52|A0A553SG52_NIACIDUF1811familyproteinOS=NialliacirculansOX=1397GN=CEQ21_10230PE=4SV=1	REV__tr|A0A553SG52|A0A553SG52_NIACIDUF1811familyproteinOS=NialliacirculansOX=1397GN=CEQ21_10230PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	629.8478393554688	2	629.361702	1256.70885	0.26289	0.00016545	0.33952	0.00021368	0.6024	0.00037913	629.3616972873355	91.506	0.94858	90.27	90.007	90.956	-1.2355					25	17	2	0	0	0	0.025568	1	8087	8087		23.523	0	1	150050	+		23690	29662	19367	19390	26392	26392					0.09076429143328824
KKAKFDGAQE	10	Unmodified	_KKAKFDGAQE_					0	0	0		ENSG00000130477|ENST00000519716|UNC13A;UNC13A|p.N178Pfs*6|1|0.12|ENSG00000130477|chr19:17663559-17663560|-/ACGTGCTCGTCACAGG|frameshift_variant	ENSG00000130477|ENST00000519716|UNC13A	ENSG00000130477|ENST00000519716|UNC13A	MULTI-MSMS	OvCa9_classI_Rep2	2	561.302490234375	2	561.301113	1120.58767	0.12113	6.7993E-05	2.977	0.001671	3.0981	0.001739	561.3024934414574	32.135	1.0883	29.425	29.184	30.272	-2.7097					48	21	4	0	0	0	0.52439	1	1033	1033		51.193	4.7359	1	95225			23691	3987	19368	19391	26393	26393					0.03220226500661738
KKALGIALIK	10	Unmodified	_KKALGIALIK_					0	0	0		GPD1L|p.T119A|1|0.08|ENSG00000152642|chr3:32138716-32138716|A/G|missense_variant	GPD1L|p.T119A|1|0.08|ENSG00000152642|chr3:32138716-32138716|A/G|missense_variant	GPD1L|p.T119A|1|0.08|ENSG00000152642|chr3:32138716-32138716|A/G|missense_variant	MSMS	OvCa9_classI_Rep3	3	527.8718872070312	2	527.870977	1053.7274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.08	1	118.05	117.55	118.55	-1.0271								0	0	0	0.14189	1	9014	9014		34.173	3.6689	1				23692	14347	19369	19392	26394	26394					0.2026863557582601
KKALPPEKKQN	11	Unmodified	_KKALPPEKKQN_					0	0	0		ENSG00000153187|ENST00000640218|HNRNPU;nc|ENSG00000153187|Q00839-2|HNRNPU;ENST00000468690.2_2_1:245019158-245019479:-|nuORF	ENSG00000153187|ENST00000640218|HNRNPU	ENSG00000153187|ENST00000640218|HNRNPU	MULTI-MSMS	OvCa9_classI_Rep4_	4	640.8889770507812	2	640.887887	1279.76122	4.2244	0.0027074	-1.1319	-0.00072543	3.0925	0.0019819	640.8870407090299	132.38	1.5362	130.88	130.54	132.07	-1.5015					82	30	4	0	0	0	0.7046	1	12750	12750		28.081	0.19925	1	355310			23693	5665	19370	19393	26395	26395					0.13253012276936715
KKALRPLPL	9	Unmodified	_KKALRPLPL_					0	0	0			REV__ENST00000526768.5_1_11:1475616-1478267:+|nuORF	REV__ENST00000526768.5_1_11:1475616-1478267:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.314697265625	2	518.355494	1034.69644	-0.50035	-0.00025936	1.8941	0.00098184	1.3938	0.00072248	518.356530007463	94.568	0.24989	92.1	91.91	92.16	-2.4685					5	4	2	0	0	0	0.027462	1	8270	8270		19.36	1.0356	1	6039.4	+		23694	27147	19371	19394	26396	26396					0.1804748226159063
KKANNFPM	8	Unmodified	_KKANNFPM_					0	0	0			REV__nc|ENSG00000129680|Q8IWC1-2|MAP7D3	REV__nc|ENSG00000129680|Q8IWC1-2|MAP7D3	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.5768127441406	2	475.249837	948.485122	-0.18145	-8.6236E-05	0.48553	0.00023075	0.30408	0.00014451	475.2499137864496	78.331	1.1573	76.591	76.092	77.249	-1.7398					41	22	2	0	0	0	0.028476	1	6533	6533		17.365	0	1	77184	+		23695	18906	19372	19395	26397	26397					0.008818622281978605
KKAPLAKGGRK	11	Unmodified	_KKAPLAKGGRK_					0	0	0		ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	MULTI-MSMS	OvCa9_classI_Rep3	3	577.3804321289062	2	577.380032	1152.74551	0.10706	6.1815E-05	-0.27742	-0.00016018	-0.17036	-9.8364E-05	577.3797248669034	67.307	1.9534	64.42	64.086	66.039	-2.8873					67	38	3	0	0	0	0.72466	1	2859	2859		19.997	3.5236	1	87304			23696	3720	19373	19396	26398	26398					0.1752477055053987
KKAPLAKGGRK	11	Unmodified	_KKAPLAKGGRK_					0	0	0		ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	577.380032	1152.74551	-0.41941	-0.00024216	0.062392	3.6024E-05	-0.35702	-0.00020614	577.3799653094402	66.74	0.89309	64.044	63.666	64.559	-2.6958	-0.30957	0.00049554	NaN	19.997	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57506			23697	3720	19373	19396							0.1752477055053987
KKAPLAKGGRK	11	Unmodified	_KKAPLAKGGRK_					0	0	0		ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	ENSG00000125651|ENST00000394456|GTF2F1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	577.380032	1152.74551	0.38476	0.00022215	-0.85428	-0.00049324	-0.46951	-0.00027109	577.379493911282	68.088	1.1267	64.597	64.284	65.411	-3.4902	0.24342	-0.00056299	NaN	19.997	41	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92112			23698	3720	19373	19396							0.1752477055053987
KKAQVRELL	9	Unmodified	_KKAQVRELL_					0	0	0			REV__ENSG00000182348|ENST00000333190|ZNF804B	REV__ENSG00000182348|ENST00000333190|ZNF804B	MULTI-MSMS	OvCa99_classI_Rep5	1	542.8455200195312	2	542.84549	1083.67643	-1.0565	-0.0005735	-0.25622	-0.00013909	-1.3127	-0.00071259	542.8452437487728	44.149	0.70917	44.149	43.909	44.618	0					44	15	4	0	0	0	0.31747	1	2981	2981		60.972	4.2509	1	2486800	+		23699	22286	19374	19397	26399	26399					0.1379368653099391
KKASGQALAL	10	Unmodified	_KKASGQALAL_					0	0	0			REV__ENSG00000147606|ENST00000276609|SLC26A7	REV__ENSG00000147606|ENST00000276609|SLC26A7	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2857971191406	2	493.803291	985.59203	-0.2273	-0.00011224	-0.66326	-0.00032752	-0.89056	-0.00043976	493.80323365387915	56.634	0.84944	56.634	56.459	57.309	0					25	19	2	0	0	0	0.026895	1	4744	4744		41.427	0	1	390410	+		23700	20075	19375	19398	26400	26400					0.09865735714208768
KKATKESGL	9	Unmodified	_KKATKESGL_					0	0	0		ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.2746276855469	2	481.287474	960.560395	-0.081151	-3.9057E-05	-0.67406	-0.00032442	-0.75521	-0.00036347	481.2868454305182	33.175	0.83432	33.175	33.039	33.873	0					20	16	3	0	0	0	0.027462	1	1543	1543		30.504	18.297	1	74233			23701	2857	19376	19399	26401	26401					0.07853742960276122
KKATKESGL	9	Unmodified	_KKATKESGL_					0	0	0		ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	481.287474	960.560395	-2.4443	-0.0011764	3.5449	0.0017061	1.1006	0.00052972	481.2889980415249	35.566	0.89617	32.856	32.503	33.4	-2.7097	-0.15962	0.0003311	NaN	30.504	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18614			23702	2857	19376	19399							0.07853742960276122
KKAVQAARTTV	11	Unmodified	_KKAVQAARTTV_					0	0	0			REV__CCNB2|p.P62Afs*39|1|0.06|ENSG00000157456|chr15:59107585-59107586|-/GGCAGTAAAGTGT|frameshift_variant	REV__CCNB2|p.P62Afs*39|1|0.06|ENSG00000157456|chr15:59107585-59107586|-/GGCAGTAAAGTGT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	586.859375	2	586.859129	1171.70371	3.4958	0.0020515	-3.5357	-0.0020749	-0.039895	-2.3413E-05	586.8570592065652	24.977	0.52668	22.268	22.052	22.579	-2.7097					22	14	2	0	0	0	0.72526	1	204	204		12.207	1.3411	1	20544	+		23703	15754	19377	19400	26402	26402					0.12472170071350774
KKCARRFTDY	10	Unmodified	_KKCARRFTDY_					0	0	0		nc|ENSG00000198732|Q9H4F8|SMOC1;ENSG00000198732|ENST00000361956|SMOC1	nc|ENSG00000198732|Q9H4F8|SMOC1	nc|ENSG00000198732|Q9H4F8|SMOC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	429.8916931152344	3	429.892401	1286.65538	-0.20785	-8.9353E-05	-0.23055	-9.9111E-05	-0.4384	-0.00018846	429.89229437503934	41.659	2.1219	38.678	38.336	40.458	-2.9804					92	40	4	0	0	0	0.7759	1	1899	1899		20.837	0	1	342190			23704	8860	19378	19401	26403	26403					0.02351353159815517
KKCDQKKK	8	Carbamidomethyl (C)	_KKC(Carbamidomethyl (C))DQKKK_	KKC(1)DQKKK		KKC(85)DQKKK		0	1	0		ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF	ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF	nc|ENSG00000108312|P17480-2|UBTF	MULTI-MSMS	OvCa9_classI_Rep2	2	531.80615234375	2	531.808051	1061.60155	-0.15092	-8.026E-05	-3.2625	-0.001735	-3.4134	-0.0018153	531.8061431998083	41.419	1.3311	38.709	38.438	39.769	-2.7097					48	26	3	0	0	0	0.42208	1	2161	2161		85.359	8.5853	1	199510			23705	2645;14948	19379	19402	26404	26404	24				0.07321180728104082
KKCFEHAAEF	10	Unmodified	_KKCFEHAAEF_					0	0	0			REV__nc|ENSG00000153246|Q13018-2|PLA2R1	REV__nc|ENSG00000153246|Q13018-2|PLA2R1	MULTI-SECPEP	OvCa99_classI_Rep5	1	606.2354736328125	2	605.289691	1208.56483	0.12417	7.5157E-05	2.8385	0.0017181	2.9626	0.0017932	605.2913509386602	105.08	0.61461	105.08	104.79	105.4	0					30	13	3	0	0	0	0.026635	1	11821	11821		66.429	27.176	1	500860	+		23706	20332	19380	19403	26405	26405					-0.031111158884641554
KKCFEHAAEF	10	Unmodified	_KKCFEHAAEF_					0	0	0			REV__nc|ENSG00000153246|Q13018-2|PLA2R1	REV__nc|ENSG00000153246|Q13018-2|PLA2R1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	605.289691	1208.56483	-0.7275	-0.00044035	2.9141	0.0017639	2.1866	0.0013235	605.7928628379751	105.76	0.84958	105.32	105.05	105.9	-0.43642	0.024593	0.00045239	NaN	56.721	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43298	+		23707	20332	19380	19403							-0.031111158884641554
KKCFEHAAEF	10	Unmodified	_KKCFEHAAEF_					0	0	0			REV__nc|ENSG00000153246|Q13018-2|PLA2R1	REV__nc|ENSG00000153246|Q13018-2|PLA2R1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	605.289691	1208.56483	2.2185	0.0013428	0.21338	0.00012916	2.4319	0.001472	605.2897841256876	106.68	1.0367	105.42	105.06	106.1	-1.267	0.12011	-0.0028171	NaN	56.721	32	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48502	+		23708	20332	19380	19403							-0.031111158884641554
KKCFEHAAEF	10	Unmodified	_KKCFEHAAEF_					0	0	0			REV__nc|ENSG00000153246|Q13018-2|PLA2R1	REV__nc|ENSG00000153246|Q13018-2|PLA2R1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	605.289691	1208.56483	-0.92502	-0.0005599	3.7147	0.0022484	2.7896	0.0016885	605.2917849662362	107.25	0.62672	105.37	105.07	105.69	-1.8785	0.071762	0.0014215	NaN	56.721	31	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40000	+		23709	20332	19380	19403							-0.031111158884641554
KKCRMNKK	8	Carbamidomethyl (C)	_KKC(Carbamidomethyl (C))RMNKK_	KKC(1)RMNKK		KKC(68)RMNKK		0	1	0		nc|ENSG00000134363|P19883-2|FST;ENSG00000134363|ENST00000256759|FST	nc|ENSG00000134363|P19883-2|FST	nc|ENSG00000134363|P19883-2|FST	MULTI-MSMS	OvCa9_classI_Rep2	2	546.8114624023438	2	546.81007	1091.60559	-0.3367	-0.00018411	2.0859	0.0011406	1.7492	0.00095649	546.811268925944	77.282	4.1237	75.493	75.051	79.174	-1.7894					214	80	5	0	0	0	0.57878	1	6406	6406		68.485	7.5128	1	5234200			23710	4290	19381	19404	26406	26406	42				0.06344946950162011
KKCTKGKG	8	Unmodified	_KKCTKGKG_					0	0	0			REV__nc|ENSG00000101972|Q8N3U4|STAG2	REV__nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MSMS	OvCa99_classI_Rep5	1	425.25347900390625	2	425.25238	848.490207	1.8694	0.00079496	1.0345	0.00043994	2.9039	0.0012349	425.25265997056164	129.9	1.0849	129.9	129.54	130.63	0					40	22	3	0	0	0	0.73136	1	15060	15060		8.2313	3.915	1	221570	+		23711	17530	19382	19405	26407	26407					0.059901660908280974
KKDDVSIY	8	Unmodified	_KKDDVSIY_					0	0	0		nc|ENSG00000140284|O14975-2|SLC27A2;ENSG00000140284|ENST00000267842|SLC27A2;ENST00000544960.1_1_15:50489722-50490445:+|nuORF	nc|ENSG00000140284|O14975-2|SLC27A2	nc|ENSG00000140284|O14975-2|SLC27A2	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.7802734375	2	484.258382	966.502212	-0.58661	-0.00028407	-1.343	-0.00065037	-1.9296	-0.00093444	484.2575789604696	25.167	0.25056	25.167	25.042	25.292	0					6	4	2	0	0	0	0.028476	1	527	527		25.45	8.977	1	5816.9			23712	4830	19383	19406	26408	26408					0.017620613150029385
KKDIEVRVI	9	Unmodified	_KKDIEVRVI_					0	0	0		tr|A0A7D6VU65|A0A7D6VU65_9CLOTCoenzymeAbiosynthesisbifunctionalproteinCoaBCOS=ClostridiumintestinaleOX=36845GN=coaBCPE=3SV=1	tr|A0A7D6VU65|A0A7D6VU65_9CLOTCoenzymeAbiosynthesisbifunctionalproteinCoaBCOS=ClostridiumintestinaleOX=36845GN=coaBCPE=3SV=1	tr|A0A7D6VU65|A0A7D6VU65_9CLOTCoenzymeAbiosynthesisbifunctionalproteinCoaBCOS=ClostridiumintestinaleOX=36845GN=coaBCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.3452758789062	2	550.345323	1098.67609	0.85243	0.00046913	-1.1693	-0.00064354	-0.3169	-0.00017441	550.3445389502896	36.811	1.2461	33.918	33.695	34.941	-2.8925					67	24	4	0	0	0	0.40667	1	1322	1322		51.335	6.9583	1	399920			23713	35170	19384	19407	26409	26409					0.1307026681113257
KKDIKSITSN	10	Unmodified	_KKDIKSITSN_					0	0	0		nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-10|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-7|TCF4	nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-7|TCF4	nc|ENSG00000196628|P15884-7|TCF4	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3297729492188	2	567.32987	1132.64519	-2.3399	-0.0013275	2.1766	0.0012349	-0.16324	-9.2608E-05	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.71173	1	14745	14745		29.17	5.6474	1	241060			23714	15243;15244	19385	19408	26410	26410					0.08417068706239661
KKDKKRMFKRK	11	Unmodified	_KKDKKRMFKRK_					0	0	0			REV__ENSG00000109775|ENST00000264689|UFSP2	REV__ENSG00000109775|ENST00000264689|UFSP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.31011962890625	3	498.313412	1491.91841	-6.1524	-0.0030658	-0.46998	-0.0002342	-6.6224	-0.0033	498.3133054732335	158.89	2.5083	157.31	156.27	158.78	-1.5859					162	69	3	0	0	0	0.72575	1	15694	15694		5.6988	0.28586	1	46050	+		23715	17950	19386	19409	26411	26411					0.19212393615453038
KKDLLSKRI	9	Unmodified	_KKDLLSKRI_					0	0	0			REV__ENSG00000189233|ENST00000413272|NUGGC	REV__ENSG00000189233|ENST00000413272|NUGGC	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.8479614257812	2	550.861141	1099.70773	0.60137	0.00033127	-0.19761	-0.00010886	0.40376	0.00022241	550.8607980085386	32.86	1.1654	30.165	29.782	30.947	-2.6954					52	23	3	0	0	0	0.66262	1	850	850		24.519	0.31644	1	105340	+		23716	22770	19387	19410	26412	26412					0.16186259565097316
KKDRKLPA	8	Unmodified	_KKDRKLPA_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MSMS	OvCa99_classI_Rep5	1	478.3038024902344	2	478.306001	954.597449	0.30656	0.00014663	-0.37184	-0.00017785	-0.065275	-3.1222E-05	478.30565194396985	45.179	0.65021	45.179	44.932	45.582	0					37	14	4	0	0	0	0.73205	1	3106	3106		35.618	3.6634	1	1673700			23717	4133	19388	19411	26413	26413					0.11833459296690307
KKDSKITAGL	10	Unmodified	_KKDSKITAGL_					0	0	0		tr|A0A553SJ27|A0A553SJ27_NIACIImidazoleglycerolphosphatesynthasesubunitHisHOS=NialliacirculansOX=1397GN=hisHPE=3SV=1	tr|A0A553SJ27|A0A553SJ27_NIACIImidazoleglycerolphosphatesynthasesubunitHisHOS=NialliacirculansOX=1397GN=hisHPE=3SV=1	tr|A0A553SJ27|A0A553SJ27_NIACIImidazoleglycerolphosphatesynthasesubunitHisHOS=NialliacirculansOX=1397GN=hisHPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.8162841796875	2	530.821681	1059.62881	-1.3125	-0.00069672	0.57537	0.00030542	-0.73716	-0.0003913	530.8219078402473	39.926	1.0199	36.972	36.665	37.685	-2.9541					42	19	4	0	0	0	0.45822	1	1678	1678		60.118	3.6845	1	189580			23718	33457	19389	19412	26414	26414					0.10137987540133508
KKDSKITAGL	10	Unmodified	_KKDSKITAGL_					0	0	0		tr|A0A553SJ27|A0A553SJ27_NIACIImidazoleglycerolphosphatesynthasesubunitHisHOS=NialliacirculansOX=1397GN=hisHPE=3SV=1	tr|A0A553SJ27|A0A553SJ27_NIACIImidazoleglycerolphosphatesynthasesubunitHisHOS=NialliacirculansOX=1397GN=hisHPE=3SV=1	tr|A0A553SJ27|A0A553SJ27_NIACIImidazoleglycerolphosphatesynthasesubunitHisHOS=NialliacirculansOX=1397GN=hisHPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.821681	1059.62881	-1.387	-0.00073625	1.1806	0.00062671	-0.20637	-0.00010954	530.8221181563727	39.601	0.74517	36.892	36.657	37.402	-2.7097	-0.040346	0.00022251	NaN	60.118	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60366			23719	33457	19389	19412							0.10137987540133508
KKDVLFINIH	10	Unmodified	_KKDVLFINIH_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OvCa99_classI_Rep5	1	409.578857421875	3	409.580041	1225.71829	0.18371	7.5242E-05	-2.1024	-0.00086109	-1.9187	-0.00078585	409.57893948634387	27.221	0.49878	27.221	27.043	27.542	0					26	9	4	0	0	0	0.73063	1	794	794		27.047	2.8155	1	136040	+		23720	16672	19390	19413	26415	26415					0.11446242219494707
KKDYFKWWRRK	11	Unmodified	_KKDYFKWWRRK_					0	0	0			REV__tr|A0A553SRX5|A0A553SRX5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02025PE=4SV=1	REV__tr|A0A553SRX5|A0A553SRX5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02025PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.3532104492188	3	547.643927	1639.90995	-0.7348	-0.00040241	2.5352	0.0013884	1.8004	0.000986	547.6457989516797	82.757	0.73234	80.074	79.733	80.466	-2.6829					34	14	3	0	0	0	0.026549	1	6874	6874		3.6191	3.2477	1	71432	+		23721	30773	19391	19414	26416	26416					0.11559162970456782
KKDYFKWWRRK	11	Unmodified	_KKDYFKWWRRK_					0	0	0			REV__tr|A0A553SRX5|A0A553SRX5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02025PE=4SV=1	REV__tr|A0A553SRX5|A0A553SRX5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02025PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	547.643927	1639.90995	0.53915	0.00029526	2.0933	0.0011464	2.6325	0.0014417	547.6453177342637	81.626	0.98344	79.977	79.716	80.7	-1.6485	-0.048463	-0.00028477	NaN	3.6191	40	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54267	+		23722	30773	19391	19414							0.11559162970456782
KKEEELAFV	9	Unmodified	_KKEEELAFV_					0	0	0		ENST00000578399.5_1_18:71740698-71797950:-|nuORF;nc|ENSG00000141665|Q8NCQ5-2|FBXO15;ENSG00000141665|ENST00000419743|FBXO15	ENST00000578399.5_1_18:71740698-71797950:-|nuORF	ENST00000578399.5_1_18:71740698-71797950:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	546.7855834960938	2	546.800414	1091.58628	0.88343	0.00048306	-4.1308	-0.0022587	-3.2474	-0.0017757	547.2992514127213	41.687	0.24619	38.977	38.783	39.029	-2.7097					6	4	2	0	0	0	0.027462	1	2197	2197		25.574	7.312	1	5655.9			23723	4934	19392	19415	26417	26417					0.04414592411899321
KKEILALPPTG	11	Unmodified	_KKEILALPPTG_					0	0	0		CON__Q6T181	CON__Q6T181	CON__Q6T181	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8583374023438	2	583.860806	1165.70706	-6.9005	-0.0040289	3.2924	0.0019223	-3.608	-0.0021066	583.8626216517176	154.95	1.1831	153.88	153.56	154.74	-1.073					81	29	4	0	0	0	0.71789	1	13326	13326		23.523	5.2606	1	200380		+	23724	655	19393	19416	26418	26418					0.1308342012534922
KKELLLPGN	9	Unmodified	_KKELLLPGN_					0	0	0		ENSG00000090339|ENST00000264832|ICAM1	ENSG00000090339|ENST00000264832|ICAM1	ENSG00000090339|ENST00000264832|ICAM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.2831726074219	2	506.313492	1010.61243	2.1492	0.0010882	2.0169	0.0010212	4.1662	0.0021094	506.31483842346165	79.897	0.23989	79.897	79.704	79.944	0					7	5	2	0	0	0	0.027462	1	8156	8156		30.318	7.7381	1	147610			23725	1835	19394	19417	26419	26419					0.10754906374052098
KKEMLKQLK	9	Unmodified	_KKEMLKQLK_					0	0	0			REV__nc|ENSG00000204843|Q14203-5|DCTN1	REV__nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	OvCa99_classI_Rep5	1	573.3567504882812	2	573.357376	1144.7002	-0.088804	-5.0917E-05	-0.22321	-0.00012798	-0.31201	-0.0001789	573.3570865889866	32.528	0.53945	32.528	32.353	32.892	0					29	10	4	0	0	0	0.055627	1	1427	1427		115.49	16.119	1	813210	+		23726	23188	19395	19418	26420	26420					0.13363783973136378
KKENEVSVV	9	Unmodified	_KKENEVSVV_					0	0	0		ENSG00000169359|ENST00000643144|SLC33A1	ENSG00000169359|ENST00000643144|SLC33A1	ENSG00000169359|ENST00000643144|SLC33A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.8120727539062	2	516.290214	1030.56587	2.1611	0.0011158	-0.16992	-8.773E-05	1.9912	0.001028	516.2898931301387	80.291	0.58532	80.291	79.944	80.529	0					23	10	4	0	0	0	0.027461	1	8222	8222		49.442	25.239	1	833550			23727	7003	19396	19419	26421	26421					0.051814217520814054
KKEPGAIV	8	Unmodified	_KKEPGAIV_					0	0	0			REV__tr|A0A7D7A305|A0A7D7A305_9CLOTATP-dependentzincmetalloproteaseFtsHOS=ClostridiumintestinaleOX=36845GN=ftsHPE=3SV=1	REV__tr|A0A7D7A305|A0A7D7A305_9CLOTATP-dependentzincmetalloproteaseFtsHOS=ClostridiumintestinaleOX=36845GN=ftsHPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	421.259033203125	2	421.260728	840.506903	-0.16203	-6.8257E-05	-2.9992	-0.0012634	-3.1612	-0.0013317	421.2593246005652	135.39	1.3287	134.28	133.92	135.24	-1.1076					52	26	3	0	0	0	0.74971	1	10966	10966		26.796	2.5934	1	253370	+		23728	32563	19397	19420	26422	26422					0.0802699024843605
KKEQIIRV	8	Unmodified	_KKEQIIRV_					0	0	0			REV__ENSG00000143297|ENST00000361835|FCRL5	REV__ENSG00000143297|ENST00000361835|FCRL5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3087158203125	2	507.326934	1012.63931	-0.21676	-0.00010997	-2.1034	-0.0010671	-2.3202	-0.0011771	507.3253847303821	48.162	0.45675	45.055	44.787	45.244	-3.1077					11	8	2	0	0	0	0.028476	1	2648	2648		51.335	5.3835	1	12044	+		23729	19827	19398	19421	26423	26423					0.13350014985246617
KKERERQINR	10	Unmodified	_KKERERQINR_					0	0	0		ENST00000413731.1_1_17:16649540-16650074:-|nuORF	ENST00000413731.1_1_17:16649540-16650074:-|nuORF	ENST00000413731.1_1_17:16649540-16650074:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	452.9337158203125	3	452.932136	1355.77458	1.2617	0.00057148	1.5858	0.00071825	2.8475	0.0012897	452.932778614781	65.409	1.321	62.463	62.198	63.519	-2.9459					63	25	4	0	0	0	0.73063	1	2613	2613		27.047	2.8155	1	128460			23730	11568	19399	19422	26424	26424					0.1109226310888971
KKERQILP	8	Unmodified	_KKERQILP_					0	0	0		ENSG00000117481|ENST00000474844|NSUN4;nc|ENSG00000117481|Q96CB9-4|NSUN4;nc|ENSG00000117481|Q96CB9-3|NSUN4	ENSG00000117481|ENST00000474844|NSUN4	ENSG00000117481|ENST00000474844|NSUN4	MULTI-MSMS	OvCa99_classI_Rep5	1	506.3188171386719	2	506.319109	1010.62366	-0.48665	-0.0002464	0.020897	1.0581E-05	-0.46575	-0.00023582	506.3190377928278	33.659	0.63268	33.659	33.384	34.017	0					32	12	4	0	0	0	0.42208	1	1559	1559		85.359	5.9085	1	739290			23731	3257	19400	19423	26425	26425					0.11877728468175519
KKESSPRLI	9	Unmodified	_KKESSPRLI_					0	0	0			REV__ENST00000483771.5_1_10:86008492-86018392:+|nuORF	REV__ENST00000483771.5_1_10:86008492-86018392:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	529.3212280273438	2	529.321848	1056.62914	-2.2715	-0.0012024	2.3103	0.0012229	0.038765	2.0519E-05	529.3228556155507	38.054	1.1856	35.345	35.075	36.261	-2.7097					42	23	3	0	0	0	0.59259	1	1753	1753		32.812	0.061884	1	136430	+		23732	26536	19401	19424	26426	26426					0.10309407260001535
KKEWINQERQK	11	Unmodified	_KKEWINQERQK_					0	0	0		ENSG00000156232|ENST00000286760|WHAMM	ENSG00000156232|ENST00000286760|WHAMM	ENSG00000156232|ENST00000286760|WHAMM	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.27490234375	3	496.27568	1485.80521	-0.16309	-8.094E-05	-0.17603	-8.7358E-05	-0.33912	-0.0001683	496.2754459420452	21.777	0.96091	20.439	20.169	21.13	-1.3386					47	18	4	0	0	0	0.72516	1	208	208		13.508	0	1	130870			23733	5828	19402	19425	26427	26427					0.08173996703249031
KKFGPPLAPGF	11	Unmodified	_KKFGPPLAPGF_					0	0	0			REV__nc|ENSG00000133114|Q8IXQ4-4|GPALPP1	REV__nc|ENSG00000133114|Q8IXQ4-4|GPALPP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.8082275390625	2	579.837134	1157.65972	0.49021	0.00028424	3.7223	0.0021583	4.2125	0.0024425	579.8390315530872	66.967	0.35669	66.967	66.739	67.096	0					13	8	2	0	0	0	0.025416	1	6228	6228		26.693	0	1	164100	+		23734	19129	19403	19426	26428	26428					0.08719185645031757
KKFIVKQAS	9	Unmodified	_KKFIVKQAS_					0	0	0			REV__ENSG00000135976|ENST00000420699|ANKRD36	REV__ENSG00000135976|ENST00000420699|ANKRD36	MULTI-MSMS	OvCa9_classI_Rep3	3	524.8272094726562	2	524.829309	1047.64407	-6.4209	-0.0033699	2.2692	0.001191	-4.1517	-0.0021789	524.8303693371411	156.49	1.5557	155.32	154.95	156.51	-1.1687					100	33	5	0	0	0	0.67509	1	13528	13528		23.042	4.7181	1	1025700	+		23735	19345	19404	19427	26429	26429					0.12214899127980061
KKFKKFNK	8	Unmodified	_KKFKKFNK_					0	0	0			REV__ENSG00000104320|ENST00000265433|NBN	REV__ENSG00000104320|ENST00000265433|NBN	MULTI-MSMS	OvCa9_classI_Rep2	2	534.3372192382812	2	534.339844	1066.66514	-1.8836	-0.0010065	-2.2975	-0.0012276	-4.1811	-0.0022341	534.3385363027232	49.37	2.527	46.609	45.829	48.356	-2.7603					129	50	4	0	0	0	0.74679	1	3181	3181		28.254	0.37203	1	911830	+		23736	17656	19405	19428	26430	26430					0.13446909227491233
KKFKLPRNH	9	Unmodified	_KKFKLPRNH_					0	0	0		ENSG00000163012|ENST00000295131|ZSWIM2	ENSG00000163012|ENST00000295131|ZSWIM2	ENSG00000163012|ENST00000295131|ZSWIM2	MULTI-MSMS	OvCa9_classI_Rep2	2	584.356201171875	2	584.359099	1166.70365	-2.312	-0.0013511	-2.2933	-0.0013401	-4.6053	-0.0026912	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.70177	1	14555	14555		17.365	0	1	180810			23737	6254	19406	19429	26431	26431					0.1269621486203505
KKFKNKWLF	9	Unmodified	_KKFKNKWLF_					0	0	0			REV__ADCY2|p.N875Tfs*35|1|0.17|ENSG00000078295|chr5:7789793-7789794|-/AACTAATTTAC|frameshift_variant	REV__ADCY2|p.N875Tfs*35|1|0.17|ENSG00000078295|chr5:7789793-7789794|-/AACTAATTTAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	619.869384765625	2	619.874051	1237.73355	-3.6059	-0.0022352	-3.8982	-0.0024164	-7.5041	-0.0046516	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.69895	1	13114	13114		18.324	2.6826	1	664560	+		23738	15569	19407	19430	26432	26432					0.12419153807354633
KKFKSVIKIR	10	Unmodified	_KKFKSVIKIR_					0	0	0			REV__tr|A0A553SIW4|A0A553SIW4_NIACIGlycosyltransferasefamily2proteinOS=NialliacirculansOX=1397GN=CEQ21_15635PE=4SV=1	REV__tr|A0A553SIW4|A0A553SIW4_NIACIGlycosyltransferasefamily2proteinOS=NialliacirculansOX=1397GN=CEQ21_15635PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	623.9177856445312	2	623.921532	1245.82851	-5.6275	-0.0035111	-0.80944	-0.00050503	-6.4369	-0.0040161	623.9209249558969	163.4	0.91801	163.18	162.75	163.67	-0.22696					66	30	3	0	0	0	0.95303	1	16627	16627		3.1592	0.2298	1	62419	+		23739	29938	19408	19431	26433	26433					0.21543087278541861
KKFLKKLPK	9	Unmodified	_KKFLKKLPK_					0	0	0			REV__tr|A0A7D6VY79|A0A7D6VY79_9CLOTDUF1449familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11675PE=4SV=1	REV__tr|A0A7D6VY79|A0A7D6VY79_9CLOTDUF1449familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11675PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.3950805664062	2	565.394619	1128.77469	1.794	0.0010143	-2.0217	-0.0011431	-0.22775	-0.00012877	565.3932909276965	34.314	1.2515	31.526	31.2	32.451	-2.7881					66	24	4	0	0	0	0.55588	1	1030	1030		37.159	8.0096	1	178170	+		23740	31812	19409	19432	26434	26434					0.2154491484684513
KKFLLYMF	8	Unmodified	_KKFLLYMF_					0	0	0			REV__tr|A0A553SHV2|A0A553SHV2_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_13655PE=3SV=1	REV__tr|A0A553SHV2|A0A553SHV2_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_13655PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2671508789062	2	545.311906	1088.60926	0.076099	4.1498E-05	-4.0766	-0.002223	-4.0005	-0.0021815	545.3097146475435	114.4	0.96487	114.4	114.11	115.07	0					46	20	3	0	0	0	0.028476	1	13059	13059		54.765	0	1	1424000	+		23741	29843	19410	19433	26435	26435					0.06849939995686327
KKFLNKYKP	9	Unmodified	_KKFLNKYKP_					0	0	0			REV__ENST00000488374.5_1_3:167517863-167543108:+|nuORF	REV__ENST00000488374.5_1_3:167517863-167543108:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.3306274414062	2	583.358234	1164.70191	1.8446	0.001076	4.1994	0.0024497	6.0439	0.0035258	584.3652393715439	95.311	0.41959	95.311	95.119	95.538	0					29	9	5	0	0	0	0.027462	1	10408	10408		18.324	0	1	713570	+		23742	26619	19411	19434	26436	26436					0.12615161053417978
KKFREKKIKR	10	Unmodified	_KKFREKKIKR_					0	0	0		L1P1_dup3131|chr21:8366255-8369545:+|1.1341358509163533|0.0129397411743262|6.45|422.0|82|3|sense	L1P1_dup3131|chr21:8366255-8369545:+|1.1341358509163533|0.0129397411743262|6.45|422.0|82|3|sense	L1P1_dup3131|chr21:8366255-8369545:+|1.1341358509163533|0.0129397411743262|6.45|422.0|82|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	454.2187805175781	3	454.301501	1359.88267	-0.47178	-0.00021433	0.14376	6.5311E-05	-0.32802	-0.00014902	454.301366265903	25.818	0.39872	25.818	25.693	26.092	0					16	7	4	0	0	0	0.027325	1	632	632		11.097	0.99287	1	66254			23743	14637	19412	19435	26437	26437					0.21712679430106618
KKFTGLMA	8	Unmodified	_KKFTGLMA_					0	0	0			REV__tr|A0A553SP57|A0A553SP57_NIACIStageVsporulationproteinMOS=NialliacirculansOX=1397GN=CEQ21_25725PE=4SV=1	REV__tr|A0A553SP57|A0A553SP57_NIACIStageVsporulationproteinMOS=NialliacirculansOX=1397GN=CEQ21_25725PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	448.2582702636719	2	448.257131	894.499709	0.91254	0.00040905	3.3889	0.0015191	4.3015	0.0019282	448.25856617736815	142.24	1.5311	142.01	141.52	143.05	-0.22696					82	30	4	0	0	0	0.75241	1	14266	14266		25.45	1.2474	1	131560	+		23744	30497	19413	19436	26438	26438					0.04823934376338457
KKFVLHDL	8	Unmodified	_KKFVLHDL_					0	0	0			REV__ENSG00000058335|ENST00000558480|RASGRF1	REV__ENSG00000058335|ENST00000558480|RASGRF1	MULTI-MSMS	OvCa9_classI_Rep2	2	500.3009033203125	2	500.302927	998.591301	0.39193	0.00019608	-1.0559	-0.00052829	-0.66401	-0.00033221	500.3004866188761	30.187	0.78995	27.477	27.261	28.051	-2.7097					46	15	5	0	0	0	0.75661	1	790	790		19.36	0	1	66893	+		23745	16727	19414	19437	26439	26439					0.09194941065175044
KKGALQSRAA	10	Unmodified	_KKGALQSRAA_					0	0	0		nc|ENSG00000187583|Q494U1-3|PLEKHN1;ENSG00000187583|ENST00000379410|PLEKHN1;nc|ENSG00000187583|Q494U1-2|PLEKHN1	nc|ENSG00000187583|Q494U1-3|PLEKHN1	nc|ENSG00000187583|Q494U1-3|PLEKHN1	MULTI-MSMS	OvCa9_classI_Rep2	2	515.3104858398438	2	515.311815	1028.60908	-2.0827	-0.0010732	1.7149	0.00088368	-0.36786	-0.00018956	515.312623228854	35.485	1.3896	32.775	32.503	33.893	-2.7097					66	27	3	0	0	0	0.59317	1	1486	1486		42.864	2.0861	1	694720			23746	8415	19415	19438	26440	26440					0.09591656320048969
KKGASLIIVL	10	Unmodified	_KKGASLIIVL_					0	0	0		tr|A0A7D6ZG02|A0A7D6ZG02_9CLOTPilusassemblyPilXN-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20210PE=4SV=1	tr|A0A7D6ZG02|A0A7D6ZG02_9CLOTPilusassemblyPilXN-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20210PE=4SV=1	tr|A0A7D6ZG02|A0A7D6ZG02_9CLOTPilusassemblyPilXN-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20210PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.794189453125	2	521.35516	1040.69577	-0.43044	-0.00022441	0.52633	0.00027441	0.095894	4.9995E-05	521.3553821859219	70.648	0.27306	70.648	70.488	70.761	0					15	6	3	0	0	0	0.027284	1	6776	6776		20.947	0.95016	1	662080			23747	35531	19416	19439	26441	26441					0.17704642821900052
KKGDPRVLQ	9	Unmodified	_KKGDPRVLQ_					0	0	0		tr|A0A553SFP1|A0A553SFP1_NIACIDNAalkylationrepairproteinOS=NialliacirculansOX=1397GN=CEQ21_09285PE=4SV=1	tr|A0A553SFP1|A0A553SFP1_NIACIDNAalkylationrepairproteinOS=NialliacirculansOX=1397GN=CEQ21_09285PE=4SV=1	tr|A0A553SFP1|A0A553SFP1_NIACIDNAalkylationrepairproteinOS=NialliacirculansOX=1397GN=CEQ21_09285PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.8092651367188	2	520.81419	1039.61383	-3.2806	-0.0017086	-4.4159	-0.0022999	-7.6965	-0.0040084	520.8117536553452	150.77	1.053	149.34	149.03	150.08	-1.4344					36	24	2	0	0	0	0.6653	1	14918	14918		24.203	1.1603	1	49496			23748	33058	19417	19440	26442	26442					0.09560540462803147
KKGENVPLI	9	Unmodified	_KKGENVPLI_					0	0	0			REV__ENST00000415772.5_1_7:72302228-72304559:+|nuORF	REV__ENST00000415772.5_1_7:72302228-72304559:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	499.30523681640625	2	499.305667	996.596781	-0.15544	-7.7614E-05	0.06889	3.4397E-05	-0.086553	-4.3217E-05	499.3055389013854	109.26	1.4344	109.09	108.67	110.11	-0.17237					82	28	4	0	0	0	0.44568	1	10291	10291		47.657	5.1829	1	327050	+		23749	18786	19418	19441	26443	26443					0.09834619856997051
KKGFILMET	9	Unmodified	_KKGFILMET_					0	0	0			REV__ENST00000496241.6_1_6:4116110-4130478:-|nuORF	REV__ENST00000496241.6_1_6:4116110-4130478:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.7222290039062	2	533.801903	1065.58925	1.9587	0.0010456	-1.1488	-0.00061321	0.80995	0.00043235	533.8015443108222	77.478	0.88245	77.478	77.211	78.093	0					36	20	2	0	0	0	0.027462	1	7794	7794		21.96	0	1	376040	+		23750	23051	19419	19442	26444	26444					0.05908144265072224
KKGHAGRA	8	Unmodified	_KKGHAGRA_					0	0	0			REV__ENSG00000136542|ENST00000259056|GALNT5	REV__ENSG00000136542|ENST00000259056|GALNT5	MULTI-MSMS	OvCa9_classI_Rep4_	4	412.7456970214844	2	412.746111	823.477669	3.7849	0.0015622	-3.2675	-0.0013487	0.51741	0.00021356	412.74457223546	130.99	1.0366	129.51	129.21	130.24	-1.4779					35	21	3	0	0	0	0.74394	1	12592	12592		13.775	4.3048	1	52457	+		23751	19392	19420	19443	26445	26445					0.05886890742806372
KKGKYIYG	8	Unmodified	_KKGKYIYG_					0	0	0			REV__tr|A0A553SP96|A0A553SP96_NIACIIsoleucine--tRNAligaseOS=NialliacirculansOX=1397GN=ileSPE=3SV=1	REV__tr|A0A553SP96|A0A553SP96_NIACIIsoleucine--tRNAligaseOS=NialliacirculansOX=1397GN=ileSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.770751953125	2	478.781828	955.549102	-0.59252	-0.00028369	-4.3994	-0.0021064	-4.992	-0.0023901	478.7796788069989	55.63	1.4702	52.335	51.751	53.221	-3.2944					74	28	5	0	0	0	0.028476	1	3471	3471		35.201	14.719	1	1434900	+		23752	30516	19421	19444	26446	26446					0.06954965656791501
KKGNLSDLR	9	Unmodified	_KKGNLSDLR_					0	0	0			REV__nc|ENSG00000136161|O95199-2|RCBTB2	REV__nc|ENSG00000136161|O95199-2|RCBTB2	MSMS	OvCa99_classI_Rep5	1	515.8016967773438	2	515.803823	1029.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.159	1	51.159	50.659	51.659	0								0	0	0	0.12679	1	3929	3929		67.494	7.3754	1		+		23753	19366	19422	19445	26447	26447					0.07947950083121214
KKGQWLHGQ	9	Unmodified	_KKGQWLHGQ_					0	0	0			REV__ENST00000595692.1_1_19:7679981-7682940:+|nuORF	REV__ENST00000595692.1_1_19:7679981-7682940:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.7832641601562	2	541.298707	1080.58286	-0.078042	-4.2244E-05	3.2188	0.0017423	3.1407	0.0017001	541.300353922174	69.356	0.16202	69.356	69.228	69.39	0					5	3	2	0	0	0	0.027462	1	6580	6580		17.365	0.89182	1	136440	+		23754	16998	19423	19446	26448	26448					0.04579387148532987
KKGQWLHGQ	9	Unmodified	_KKGQWLHGQ_					0	0	0			REV__ENST00000595692.1_1_19:7679981-7682940:+|nuORF	REV__ENST00000595692.1_1_19:7679981-7682940:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	541.298707	1080.58286	0.80343	0.0004349	7.9872	0.0043235	8.7906	0.0047584	541.302578796505	71.589	0.49677	68.986	68.832	69.328	-2.6023	-0.18487	0.0012699	NaN	11.511	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9205.3	+		23755	16998	19423	19446							0.04579387148532987
KKGRIHQLMK	10	Unmodified	_KKGRIHQLMK_					0	0	0			REV__tr|A0A553SUH0|A0A553SUH0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_07005PE=3SV=1	REV__tr|A0A553SUH0|A0A553SUH0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_07005PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	620.8292846679688	2	619.879342	1237.74413	1.3117	0.00081313	-2.6568	-0.0016469	-1.3451	-0.00083379	619.8774863934541	118.89	0.80045	118.89	118.58	119.38	0					38	16	4	0	0	0	0.026881	1	13672	13672		19.104	0	1	338440	+		23756	31076	19424	19447	26449	26449					0.13476813190141002
KKGRPQRRRGQ	11	Unmodified	_KKGRPQRRRGQ_					0	0	0			REV__nc|ENSG00000188827|Q8IY92-2|SLX4	REV__nc|ENSG00000188827|Q8IY92-2|SLX4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.5806884765625	3	456.27987	1365.81778	0.06647	3.0329E-05	-1.2891	-0.00058821	-1.2227	-0.00055788	456.61265243936236	21.634	0.30343	20.295	20.169	20.473	-1.3386					7	5	2	0	0	0	0.02625	1	204	204		5.6988	0	1	6288.7	+		23757	22743	19425	19448	26450	26450					0.14950497676818486
KKGRVKKGH	9	Unmodified	_KKGRVKKGH_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.D3716Mfs*6|1|0.06|ENSG00000157423|chr16:70868734-70868734|C/-|frameshift_variant;nc|ENSG00000157423|Q4G0P3-5|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.3101196289062	2	519.338167	1036.66178	0.45299	0.00023525	-2.1149	-0.0010983	-1.6619	-0.00086308	519.3377536866744	82.665	1.6288	81.066	80.802	82.43	-1.5989					49	32	3	0	0	0	0.027462	1	7167	7167		30.504	8.8013	1	61893			23758	5891	19426	19449	26451	26451					0.144916591735182
KKGSPTQK	8	Unmodified	_KKGSPTQK_					0	0	0			REV__nc|ENSG00000171824|Q01780-2|EXOSC10	REV__nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-MSMS	OvCa9_classI_Rep2	2	437.2609558105469	2	437.261259	872.507966	-0.47486	-0.00020764	0.37967	0.00016601	-0.095196	-4.1626E-05	437.2613309968553	50.3	1.2895	47.506	47.182	48.472	-2.794					46	25	2	0	0	0	0.40148	1	3243	3243		87.754	0	1	508810	+		23759	21650	19427	19450	26452	26452					0.0666120461733044
KKGSPTQK	8	Unmodified	_KKGSPTQK_					0	0	0			REV__nc|ENSG00000171824|Q01780-2|EXOSC10	REV__nc|ENSG00000171824|Q01780-2|EXOSC10	MULTI-MSMS	OvCa9_classI_Rep4_	4	437.2625427246094	2	437.261259	872.507966	-1.1543	-0.00050472	0.65519	0.00028649	-0.49909	-0.00021823	437.2615353408378	50.352	1.8364	47.211	46.871	48.707	-3.1416					114	35	5	0	0	0	0.26545	2	2893	2893;2917		113.41	8.5983	1	3040600	+		23760	21650	19427	19450	26453;26454	26453					0.0666120461733044
KKGTRIYFPVG	11	Unmodified	_KKGTRIYFPVG_					0	0	0			REV__tr|A0A553SJ80|A0A553SJ80_NIACIGlucose-6-phosphate1-dehydrogenaseOS=NialliacirculansOX=1397GN=zwfPE=3SV=1	REV__tr|A0A553SJ80|A0A553SJ80_NIACIGlucose-6-phosphate1-dehydrogenaseOS=NialliacirculansOX=1397GN=zwfPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3687133789062	2	633.371872	1264.72919	-4.5141	-0.0028591	0.26314	0.00016666	-4.251	-0.0026925	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.71498	1	15626	15626		24.519	3.5723	1	369460	+		23761	29976	19428	19451	26455	26455					0.1074164459378153
KKGVKLAH	8	Unmodified	_KKGVKLAH_					0	0	0			REV__tr|A0A553STJ0|A0A553STJ0_NIACICarbohydratediacidregulatorOS=NialliacirculansOX=1397GN=CEQ21_05100PE=3SV=1	REV__tr|A0A553STJ0|A0A553STJ0_NIACICarbohydratediacidregulatorOS=NialliacirculansOX=1397GN=CEQ21_05100PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	441.775634765625	2	440.789987	879.565421	3.0177	0.0013302	-1.3978	-0.00061613	1.6199	0.00071403	440.78929467962917	126.27	0.61316	126.27	125.95	126.56	0					22	12	2	0	0	0	0.028476	1	14565	14565		52.299	7.7681	1	73836	+		23762	30971	19429	19452	26456	26456					0.12082091613547163
KKGVLPKKQ	9	Unmodified	_KKGVLPKKQ_					0	0	0			REV__ENSG00000174444|ENST00000307961|RPL4	REV__ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	OvCa9_classI_Rep2	2	513.3446655273438	2	513.345126	1024.6757	2.252	0.0011561	-2.4669	-0.0012664	-0.21488	-0.00011031	513.3436996113568	27.778	1.0347	25.068	24.871	25.906	-2.7097					48	22	3	0	0	0	0.31747	1	525	525		60.972	2.19	1	181780	+		23763	21832	19430	19453	26457	26457					0.16434891881931435
KKHAASFL	8	Unmodified	_KKHAASFL_					0	0	0			REV__tr|A0A553SKW7|A0A553SKW7_NIACIExodeoxyribonuclease7largesubunitOS=NialliacirculansOX=1397GN=xseAPE=3SV=1	REV__tr|A0A553SKW7|A0A553SKW7_NIACIExodeoxyribonuclease7largesubunitOS=NialliacirculansOX=1397GN=xseAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	451.2672119140625	2	451.266345	900.518136	0.55963	0.00025254	-0.96547	-0.00043568	-0.40583	-0.00018314	451.2657863867747	89.158	1.2365	86.555	86.286	87.523	-2.6027					47	24	2	0	0	0	0.62934	1	7651	7651		57.811	11.859	1	573870	+		23764	30158	19431	19454	26458	26458					0.06389812342570167
KKHKKKSPKC	10	Unmodified	_KKHKKKSPKC_					0	0	0			REV__ENSG00000197275|ENST00000336148|RAD54B	REV__ENSG00000197275|ENST00000336148|RAD54B	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3698120117188	2	606.373892	1210.73323	-3.14	-0.001904	-3.9422	-0.0023905	-7.0822	-0.0042945	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.82648	1	15088	15088		15.642	1.5047	1	257720	+		23765	22907	19432	19455	26459	26459					0.13629410815860865
KKHKLDKT	8	Unmodified	_KKHKLDKT_					0	0	0			REV__HKDC1|p.V440Pfs*51|1|0.33|ENSG00000156510|chr10:69248475-69248485|TGTCCGCTTCC/-|frameshift_variant	REV__HKDC1|p.V440Pfs*51|1|0.33|ENSG00000156510|chr10:69248475-69248485|TGTCCGCTTCC/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.2950439453125	2	499.311284	996.608014	-0.66423	-0.00033166	0.99892	0.00049877	0.33469	0.00016711	499.31167544409743	38.003	0.77225	38.003	37.668	38.44	0					29	16	3	0	0	0	0.028476	1	2093	2093		18.324	0	1	878790	+		23766	20484	19433	19456	26460	26460					0.1095744195114321
KKHLFIGT	8	Unmodified	_KKHLFIGT_					0	0	0			REV__nc|ENSG00000183977|A8MPX8-2|PP2D1	REV__nc|ENSG00000183977|A8MPX8-2|PP2D1	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.2882080078125	2	472.28982	942.565087	-2.429	-0.0011472	-1.7443	-0.00082379	-4.1733	-0.001971	472.2888822731472	151.46	1.6275	150.03	149.41	151.04	-1.4344					87	36	4	0	0	0	0.75241	1	15031	15031		25.45	6.0902	1	477430	+		23767	22396	19434	19457	26461	26461					0.09150671893701201
KKIAFYFL	8	Unmodified	_KKIAFYFL_					0	0	0			REV__tr|A0A553SKE2|A0A553SKE2_NIACIM23familymetallopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_18430PE=4SV=1	REV__tr|A0A553SKE2|A0A553SKE2_NIACIM23familymetallopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_18430PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.3120727539062	2	515.310221	1028.60589	-0.79264	-0.00040846	3.8275	0.0019723	3.0348	0.0015639	515.3121366521643	25.267	0.35103	25.267	25.142	25.493	0					12	6	3	0	0	0	0.69415	1	552	552		44.531	10.609	1	66100	+		23768	30115	19435	19458	26462	26462					0.0927301321332834
KKIAMKGSHK	10	Unmodified	_KKIAMKGSHK_					0	0	0			REV__tr|A0A7D6W178|A0A7D6W178_9CLOTIsopropylmalatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02710PE=4SV=1	REV__tr|A0A7D6W178|A0A7D6W178_9CLOTIsopropylmalatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02710PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.3408813476562	2	564.339518	1126.66448	1.0767	0.00060761	1.9611	0.0011067	3.0378	0.0017143	564.340491084043	39.247	1.4581	36.321	36.097	37.555	-2.9264					57	28	3	0	0	0	0.67931	1	1605	1605		32.812	0	1	229810	+		23769	31879	19436	19459	26463	26463					0.10621746516153507
KKIAYEAEE	9	Unmodified	_KKIAYEAEE_					0	0	0			REV__tr|A0A553SGJ9|A0A553SGJ9_NIACIPhosphate-specifictransportsystemaccessoryproteinPhoUOS=NialliacirculansOX=1397GN=phoUPE=3SV=1	REV__tr|A0A553SGJ9|A0A553SGJ9_NIACIPhosphate-specifictransportsystemaccessoryproteinPhoUOS=NialliacirculansOX=1397GN=phoUPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.780517578125	2	540.782222	1079.54989	0.44143	0.00023872	-1.3364	-0.00072273	-0.89502	-0.00048401	540.7814669849645	103.07	0.52567	101.54	101.41	101.94	-1.5211					14	9	2	0	0	0	0.027462	1	7108	7108		47.657	15.702	1	53959	+		23770	29709	19437	19460	26464	26464					0.013297155151803963
KKIAYEAEE	9	Unmodified	_KKIAYEAEE_					0	0	0			REV__tr|A0A553SGJ9|A0A553SGJ9_NIACIPhosphate-specifictransportsystemaccessoryproteinPhoUOS=NialliacirculansOX=1397GN=phoUPE=3SV=1	REV__tr|A0A553SGJ9|A0A553SGJ9_NIACIPhosphate-specifictransportsystemaccessoryproteinPhoUOS=NialliacirculansOX=1397GN=phoUPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	540.782222	1079.54989	-1.6748	-0.0009057	1.6744	0.0009055	-0.00037275	-2.0158E-07	540.7829654406265	102.4	0.54287	101.71	101.54	102.08	-0.68459	0.059199	0.0014546	NaN	42.864	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35196	+		23771	29709	19437	19460							0.013297155151803963
KKIGPKGPQL	10	Unmodified	_KKIGPKGPQL_					0	0	0		tr|A0A7D6ZEG0|A0A7D6ZEG0_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13585PE=4SV=1	tr|A0A7D6ZEG0|A0A7D6ZEG0_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13585PE=4SV=1	tr|A0A7D6ZEG0|A0A7D6ZEG0_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13585PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	533.3412475585938	2	533.342584	1064.67061	-5.4005	-0.0028803	1.293	0.00068962	-4.1075	-0.0021907	533.3431631989303	156.44	1.0857	156.21	155.92	157	-0.22696					71	26	4	0	0	0	0.81289	1	15941	15941		17.365	0	1	260540			23772	35482	19438	19461	26465	26465					0.1408658801931324
KKIHLLLEE	9	Unmodified	_KKIHLLLEE_					0	0	0			REV__tr|A0A553SM96|A0A553SM96_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22140PE=4SV=1	REV__tr|A0A553SM96|A0A553SM96_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22140PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	561.8455810546875	2	561.847699	1121.68084	-5.3491	-0.0030054	1.7307	0.0009724	-3.6184	-0.002033	561.8485776281088	152.58	1.5019	151.61	151.19	152.7	-0.97299					81	30	4	0	0	0	0.59983	1	13069	13069		31.955	6.5047	1	218830	+		23773	30310	19439	19462	26466	26466					0.12487150953893433
KKIKDLYTVS	10	Unmodified	_KKIKDLYTVS_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OvCa9_classI_Rep3	3	597.85595703125	2	597.858264	1193.70197	-2.7036	-0.0016164	-0.53743	-0.00032131	-3.241	-0.0019377	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.74374	1	12612	12612		25.574	0	1	591030	+		23774	16701	19440	19463	26467	26467					0.11287116262747077
KKIKLATYAS	10	Unmodified	_KKIKLATYAS_					0	0	0		tr|A0A553SPB7|A0A553SPB7_NIACIRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=sigEPE=3SV=1;tr|A0A7D6ZJ54|A0A7D6ZJ54_9CLOTRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=sigEPE=3SV=1	tr|A0A553SPB7|A0A553SPB7_NIACIRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=sigEPE=3SV=1	tr|A0A553SPB7|A0A553SPB7_NIACIRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=sigEPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.8460083007812	2	561.847699	1121.68084	-2.5142	-0.0014126	-1.0339	-0.00058092	-3.5482	-0.0019935	561.8469845001015	152.99	1.31	151.56	151.24	152.55	-1.4351					96	32	4	0	0	0	0.66721	1	15149	15149		34.173	0.65696	1	225430			23775	34025	19441	19464	26468	26468					0.12487150953870696
KKILYIQSSA	10	Unmodified	_KKILYIQSSA_					0	0	0			REV__chr2:37107380-37107474|180|10.81|0.14|6.26|-|1|None,EIF2AK2|1	REV__chr2:37107380-37107474|180|10.81|0.14|6.26|-|1|None,EIF2AK2|1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8434448242188	2	575.845156	1149.67576	-2.8608	-0.0016474	-0.58729	-0.00033819	-3.4481	-0.0019856	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.67931	1	14564	14564		32.812	7.2384	1	356230	+		23776	16002	19442	19465	26469	26469					0.10690847091291289
KKIMKRIF	8	Unmodified	_KKIMKRIF_					0	0	0		ENSG00000177174|ENST00000317861|OR14C36	ENSG00000177174|ENST00000317861|OR14C36	ENSG00000177174|ENST00000317861|OR14C36	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.2770385742188	2	532.344072	1062.67359	-0.92398	-0.00049187	4.2968	0.0022874	3.3728	0.0017955	532.8481304792269	59.337	0.59332	55.945	55.655	56.248	-3.392					17	11	2	0	0	0	0.028476	1	3945	3945		19.36	4.4951	1	21855			23777	7664	19443	19466	26470	26470					0.1447613987245404
KKIMKRIF	8	Unmodified	_KKIMKRIF_					0	0	0		ENSG00000177174|ENST00000317861|OR14C36	ENSG00000177174|ENST00000317861|OR14C36	ENSG00000177174|ENST00000317861|OR14C36	MULTI-MATCH	OvCa9_classI_Rep2	2		2	532.344072	1062.67359	-1.4593	-0.00077685	5.1972	0.0027667	3.7379	0.0019899	532.3467756932358	58.393	0.80218	55.613	55.335	56.137	-2.7801	-0.16582	0.00059815	NaN	19.36	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18242			23778	7664	19443	19466							0.1447613987245404
KKINPRSTE	9	Unmodified	_KKINPRSTE_					0	0	0		ENST00000457540.1_1_1:565127-565268:+|nuORF	ENST00000457540.1_1_1:565127-565268:+|nuORF	ENST00000457540.1_1_1:565127-565268:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	536.8123168945312	2	536.809105	1071.60366	0.22481	0.00012068	2.9472	0.0015821	3.172	0.0017028	536.8103255597637	71.838	0.90448	71.838	71.629	72.533	0					43	21	4	0	0	0	0.27001	1	6954	6954		66.429	2.222	1	3802500			23779	12129	19444	19467	26471	26471					0.07071932737585485
KKIQITSSVF	10	Unmodified	_KKIQITSSVF_					0	0	0		nc|ENSG00000137691|Q9BRQ4-2|CFAP300;ENST00000530659.1_1_11:101918495-101953927:+|nuORF;ENSG00000137691|ENST00000434758|CFAP300	nc|ENSG00000137691|Q9BRQ4-2|CFAP300	nc|ENSG00000137691|Q9BRQ4-2|CFAP300	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8429565429688	2	575.845156	1149.67576	-2.8608	-0.0016474	-0.58729	-0.00033819	-3.4481	-0.0019856	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.73378	1	14494	14494		26.693	0	1	356230			23780	4607	19445	19468	26472	26472					0.10690847091291289
KKIQITSSVF	10	Unmodified	_KKIQITSSVF_					0	0	0		nc|ENSG00000137691|Q9BRQ4-2|CFAP300;ENST00000530659.1_1_11:101918495-101953927:+|nuORF;ENSG00000137691|ENST00000434758|CFAP300	nc|ENSG00000137691|Q9BRQ4-2|CFAP300	nc|ENSG00000137691|Q9BRQ4-2|CFAP300	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8426513671875	2	575.845156	1149.67576	-4.018	-0.0023138	0.54994	0.00031668	-3.4681	-0.0019971	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.66721	1	12305	12305		34.173	7.4796	1	445630			23781	4607	19445	19468	26473	26473					0.10690847091291289
KKIQLYTEK	9	Unmodified	_KKIQLYTEK_					0	0	0			REV__PLK1|p.R262Q|1|0.29|ENSG00000166851|chr16:23682126-23682126|G/A|missense_variant	REV__PLK1|p.R262Q|1|0.29|ENSG00000166851|chr16:23682126-23682126|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8429565429688	2	575.845156	1149.67576	-3.1773	-0.0018296	-0.077675	-4.4729E-05	-3.255	-0.0018744	575.8447773729116	141.87	3.8997	140.86	138.96	142.86	-1.0106					243	78	6	0	0	0	0.7044	1	11943	11943		16.473	0	1	129610	+		23782	29302	19446	19469	26474	26474					0.10690847091291289
KKIQSVKLNAL	11	Unmodified	_KKIQSVKLNAL_					0	0	0			REV__ENSG00000031698|ENST00000234677|SARS1	REV__ENSG00000031698|ENST00000234677|SARS1	MULTI-MSMS	OvCa9_classI_Rep2	2	621.395263671875	2	621.40063	1240.78671	-5.5952	-0.0034769	-3.3593	-0.0020875	-8.9545	-0.0055644	621.3985001848658	162.79	0.23622	162.57	162.4	162.64	-0.22696					15	4	5	0	0	0	0.69808	1	16593	16593		30.318	6.795	1	1093900	+		23783	16588	19447	19470	26475	26475					0.17594486799384867
KKIRALPLEQM	11	Unmodified	_KKIRALPLEQM_					0	0	0			REV__ENST00000437925.1_1_9:89699796-89699949:-|nuORF	REV__ENST00000437925.1_1_9:89699796-89699949:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	442.932373046875	3	442.935719	1325.78533	-2.6181	-0.0011596	-3.3479	-0.0014829	-5.966	-0.0026425	442.9338365741915	155.24	2.3257	155.01	153.96	156.28	-0.22696					90	64	2	0	0	0	0.7252	1	15870	15870		12.957	2.8536	1	28412	+		23784	25803	19448	19471	26476	26476					0.13546529438940524
KKIRALPLEQM	11	Unmodified	_KKIRALPLEQM_					0	0	0			REV__ENST00000437925.1_1_9:89699796-89699949:-|nuORF	REV__ENST00000437925.1_1_9:89699796-89699949:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		3	442.935719	1325.78533	-2.6181	-0.0011596	-3.3479	-0.0014829	-5.966	-0.0026425	442.9338365741915	155.24	2.3257	155.01	153.96	156.28	-0.22696	0.059498	-0.00096292	NaN	12.957	90	64	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28412	+		23785	25803	19448	19471							0.13546529438940524
KKIRALPLEQM	11	Unmodified	_KKIRALPLEQM_					0	0	0			REV__ENST00000437925.1_1_9:89699796-89699949:-|nuORF	REV__ENST00000437925.1_1_9:89699796-89699949:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	442.935719	1325.78533	-5.1651	-0.0022878	-0.44605	-0.00019757	-5.6112	-0.0024854	442.93492167327764	156.44	1.1084	154.89	154.54	155.65	-1.545	-0.059498	0.0028931	NaN	12.957	50	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15989	+		23786	25803	19448	19471							0.13546529438940524
KKIRMGKSFV	10	Unmodified	_KKIRMGKSFV_					0	0	0		ENST00000454074.5_1_7:112428555-112430236:-|nuORF	ENST00000454074.5_1_7:112428555-112430236:-|nuORF	ENST00000454074.5_1_7:112428555-112430236:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	597.358154296875	2	597.362993	1192.71143	-5.0217	-0.0029997	-2.3643	-0.0014123	-7.386	-0.0044121	597.3613502692024	157	0.93945	156.78	156.54	157.48	-0.22696					63	26	4	0	0	0	0.79917	1	16007	16007		19.104	1.7386	1	80526			23787	12081	19449	19472	26477	26477					0.12278606067275177
KKIRVIKWERH	11	Unmodified	_KKIRVIKWERH_					0	0	0			REV__tr|A0A553SFW3|A0A553SFW3_NIACIUncharacterizedproteinYhaNAAAdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09590PE=4SV=1	REV__tr|A0A553SFW3|A0A553SFW3_NIACIUncharacterizedproteinYhaNAAAdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09590PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3104553222656	3	498.312288	1491.91504	-6.1524	-0.0030658	1.7848	0.00088941	-4.3676	-0.0021764	498.3133054732335	158.89	2.5083	157.31	156.27	158.78	-1.5859					162	69	3	0	0	0	0.72579	1	15724	15724		5.1424	1.5233	1	46050	+		23788	29630	19450	19473	26478	26478					0.18875466833105747
KKISGVAYNI	10	Unmodified	_KKISGVAYNI_					0	0	0		tr|A0A7D6ZV03|A0A7D6ZV03_9CLOTFe-onlynitrogenaseaccessoryproteinAnfOOS=ClostridiumintestinaleOX=36845GN=HZF06_13440PE=4SV=1	tr|A0A7D6ZV03|A0A7D6ZV03_9CLOTFe-onlynitrogenaseaccessoryproteinAnfOOS=ClostridiumintestinaleOX=36845GN=HZF06_13440PE=4SV=1	tr|A0A7D6ZV03|A0A7D6ZV03_9CLOTFe-onlynitrogenaseaccessoryproteinAnfOOS=ClostridiumintestinaleOX=36845GN=HZF06_13440PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	546.82177734375	2	546.824224	1091.63389	-0.28343	-0.00015498	-0.49794	-0.00027229	-0.78136	-0.00042727	546.8240233396563	33.261	1.0282	33.261	32.796	33.824	0					48	20	5	0	0	0	0.5675	1	1536	1536		45.972	1.5951	1	1841600			23789	35787	19451	19474	26479	26479					0.09174291402746348
KKITKRMMA	9	Unmodified	_KKITKRMMA_					0	0	0			REV__ENST00000575193.1_1_2:89102295-89104913:+|nuORF	REV__ENST00000575193.1_1_2:89102295-89104913:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8303833007812	2	553.830472	1105.64639	0.13278	7.3535E-05	-0.60954	-0.00033758	-0.47676	-0.00026405	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.61208	1	14086	14086		30.504	3.8107	1	400120	+		23790	27770	19452	19475	26480	26480					0.09779288269783137
KKITLLKYF	9	Unmodified	_KKITLLKYF_					0	0	0		ENSG00000166851|ENST00000300093|PLK1;ENST00000518921.1_1_8:63055996-63056374:-|nuORF;ENST00000564794.1_1_16:23700038-23701081:+|nuORF;PPP1R7-PLK1|1|fusion;ENST00000562272.5_1_16:23691188-23701381:+|nuORF	ENSG00000166851|ENST00000300093|PLK1	ENSG00000166851|ENST00000300093|PLK1	MULTI-MSMS	OvCa9_classI_Rep2	2	577.3666381835938	2	577.37081	1152.72707	-5.5665	-0.0032139	-1.338	-0.00077252	-6.9045	-0.0039864	577.369928690125	160.74	1.397	160.51	160.13	161.53	-0.22696					95	27	5	0	0	0	0.68424	1	16394	16394		21.96	0	1	1195800			23791	6723	19453	19476	26481	26481					0.15681215855966002
KKITRYTSYG	10	Unmodified	_KKITRYTSYG_					0	0	0			REV__tr|A0A553SPC9|A0A553SPC9_NIACIUPF0223proteinCEQ21_26170OS=NialliacirculansOX=1397GN=CEQ21_26170PE=3SV=1	REV__tr|A0A553SPC9|A0A553SPC9_NIACIUPF0223proteinCEQ21_26170OS=NialliacirculansOX=1397GN=CEQ21_26170PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	608.8366088867188	2	608.837862	1215.66117	-3.2591	-0.0019843	1.617	0.00098452	-1.642	-0.00099973	608.8386735835178	151.65	1.4083	150.69	150.4	151.81	-0.95647					78	27	4	0	0	0	0.58067	1	12944	12944		44.377	3.599	1	213430	+		23792	30525	19454	19477	26482	26482					0.061967749431460106
KKIVEKHR	8	Unmodified	_KKIVEKHR_					0	0	0			REV__ENST00000401075.3_1_1:31961199-31961370:-|nuORF	REV__ENST00000401075.3_1_1:31961199-31961370:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	519.3316040039062	2	519.33255	1036.65055	0.74298	0.00038586	-1.3769	-0.00071507	-0.63391	-0.00032921	519.3318212319899	70.971	1.0488	68.4	68.114	69.163	-2.5707					53	19	4	0	0	0	0.74229	1	5704	5704		30.504	0	1	947020	+		23793	25409	19455	19478	26483	26483					0.13368837079360674
KKIVKVIDPN	10	Unmodified	_KKIVKVIDPN_					0	0	0			REV__nc|ENSG00000174371|Q9UQ84-4|EXO1	REV__nc|ENSG00000174371|Q9UQ84-4|EXO1	MULTI-MSMS	OvCa9_classI_Rep2	2	577.3670043945312	2	577.368798	1152.72304	-5.5665	-0.0032139	2.1457	0.0012388	-3.4208	-0.0019751	577.369928690125	160.74	1.397	160.51	160.13	161.53	-0.22696					95	27	5	0	0	0	0.62299	1	16388	16388		39.253	7.723	1	1195800	+		23794	21826	19456	19479	26484	26484					0.1527912636227029
KKIVPFLPI	9	Unmodified	_KKIVPFLPI_					0	0	0			REV__nc|ENSG00000109756|Q9Y4G8|RAPGEF2	REV__nc|ENSG00000109756|Q9Y4G8|RAPGEF2	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.3319702148438	2	527.854796	1053.69504	2.9952	0.001581	3.7024	0.0019543	6.6975	0.0035353	527.8567048221345	25.788	0.17617	23.079	22.938	23.115	-2.7097					5	3	2	0	0	0	0.027462	1	275	275		18.324	6.1176	1	4952.7	+		23795	17946	19457	19480	26485	26485					0.1703384817285496
KKIWYGIL	8	Unmodified	_KKIWYGIL_					0	0	0			REV__tr|A0A553SMW5|A0A553SMW5_NIACIPhosphatidylglycerollysyltransferaseOS=NialliacirculansOX=1397GN=mprFPE=3SV=1	REV__tr|A0A553SMW5|A0A553SMW5_NIACIPhosphatidylglycerollysyltransferaseOS=NialliacirculansOX=1397GN=mprFPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	510.8164978027344	2	510.81567	1019.61679	1.2675	0.00064746	3.5437	0.0018102	4.8112	0.0024576	510.81763090631114	145.25	1.1403	145.25	144.94	146.08	0					33	23	2	0	0	0	0.72134	1	16976	16976		39.021	1.993	1	93696	+		23796	30375	19458	19481	26486	26486					0.10776415587611154
KKIYIYVPI	9	Unmodified	_KKIYIYVPI_					0	0	0			REV__tr|A0A7D6VQS4|A0A7D6VQS4_9CLOTAminoacidpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22470PE=4SV=1	REV__tr|A0A7D6VQS4|A0A7D6VQS4_9CLOTAminoacidpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22470PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	568.8534545898438	2	568.857535	1135.70052	-7.0364	-0.0040027	-0.036741	-2.09E-05	-7.0732	-0.0040236	568.857375140279	161.4	1.8223	160.03	159.69	161.51	-1.3692					107	37	5	0	0	0	0.59983	1	14043	14043		31.955	4.0726	1	827460	+		23797	31355	19459	19482	26487	26487					0.1380952696465556
KKKEAAEKGT	10	Unmodified	_KKKEAAEKGT_					0	0	0		ENST00000457337.1_1_7:158512691-158512757:+|nuORF	ENST00000457337.1_1_7:158512691-158512757:+|nuORF	ENST00000457337.1_1_7:158512691-158512757:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3162841796875	2	545.316763	1088.61897	-1.7047	-0.0009296	1.3026	0.00071033	-0.40209	-0.00021926	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.71173	1	14261	14261		29.17	3.596	1	202430			23798	12121	19460	19483	26488	26488					0.07820799534761136
KKKETQGPVS	10	Unmodified	_KKKETQGPVS_					0	0	0		ENST00000519935.1_1_7:27209203-27211037:+|nuORF	ENST00000519935.1_1_7:27209203-27211037:+|nuORF	ENST00000519935.1_1_7:27209203-27211037:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	552.3196411132812	2	551.316763	1100.61897	-0.35914	-0.000198	-0.14011	-7.7247E-05	-0.49925	-0.00027524	551.3167558435771	30.128	0.99575	30.128	29.735	30.731	0					62	19	5	0	0	0	0.55109	1	1110	1110		47.96	0.30219	1	1744400			23799	13096	19461	19484	26489	26489					0.07268799534767822
KKKFTFIDYLL	11	Unmodified	_KKKFTFIDYLL_					0	0	0		ENSG00000152766|ENST00000371930|ANKRD22	ENSG00000152766|ENST00000371930|ANKRD22	ENSG00000152766|ENST00000371930|ANKRD22	MSMS	OvCa99_classI_Rep5	1	472.6154479980469	3	472.614751	1414.82242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.036	1	21.036	20.536	21.536	0								0	0	0	0.19474	1	84	84		15.333	1.2471	1				23800	5641	19462	19485	26490	26490					0.13160524256386452
KKKGFRLM	8	Unmodified	_KKKGFRLM_					0	0	0			REV__nc|ENSG00000116117|Q8TEW8-5|PARD3B	REV__nc|ENSG00000116117|Q8TEW8-5|PARD3B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.7783508300781	2	504.312772	1006.61099	0.54429	0.00027449	2.9415	0.0014835	3.4858	0.0017579	504.3141993553345	36.579	0.79684	33.687	33.496	34.293	-2.8925					19	15	2	0	0	0	0.028476	1	1313	1313		13.775	0	1	17975	+		23801	18283	19463	19486	26491	26491					0.10794993804302067
KKKGFVNYY	9	Unmodified	_KKKGFVNYY_					0	0	0		ENSG00000129317|ENST00000344862|PUS7L;nc|ENSG00000129317|Q9H0K6-2|PUS7L	ENSG00000129317|ENST00000344862|PUS7L	ENSG00000129317|ENST00000344862|PUS7L	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.5994873046875	2	573.818941	1145.62333	-0.63179	-0.00036253	-0.66072	-0.00037913	-1.2925	-0.00074167	573.8187166646129	53.825	0.74204	53.825	53.347	54.089	0					26	17	2	0	0	0	0.027462	1	4296	4296		23.042	0	1	389450			23802	3928	19464	19487	26492	26492					0.0563430874833557
KKKGKRSK	8	Unmodified	_KKKGKRSK_					0	0	0			REV__nc|ENSG00000116731|Q13029-2|PRDM2	REV__nc|ENSG00000116731|Q13029-2|PRDM2	MSMS	OvCa99_classI_Rep5	1	480.32379150390625	2	480.327268	958.639983	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.698	1	20.698	20.198	21.198	0								0	0	0	0.30129	1	47	47		7.1934	0	1		+		23803	18317	19465	19488	26493	26493					0.15900854424933186
KKKGLPGTSP	10	Unmodified	_KKKGLPGTSP_					0	0	0		ENST00000584374.1_1_17:73727904-73735976:+|nuORF	ENST00000584374.1_1_17:73727904-73735976:+|nuORF	ENST00000584374.1_1_17:73727904-73735976:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	506.81268310546875	2	506.811116	1011.60768	-0.96963	-0.00049142	-0.36531	-0.00018514	-1.3349	-0.00067656	506.8110395873254	89.248	2.4224	87.118	86.702	89.124	-2.1309					173	47	5	0	0	0	0.42962	1	5530	5530		64.207	6.396	1	9108500			23804	14017	19466	19489	26494	26494					0.10234022231293238
KKKHQALVCL	10	Unmodified	_KKKHQALVCL_					0	0	0		ENST00000496972.6_1_2:25600096-25600174:-|nuORF	ENST00000496972.6_1_2:25600096-25600174:-|nuORF	ENST00000496972.6_1_2:25600096-25600174:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3554077148438	2	584.355168	1166.69578	-2.3121	-0.0013511	4.4342	0.0025912	2.1222	0.0012401	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.76627	1	14832	14832		23.042	7.0357	1	180810			23805	12798	19467	19490	26495	26495					0.1191031955024755
KKKIEQDY	8	Unmodified	_KKKIEQDY_					0	0	0		ENSG00000213512|ENST00000294671|GBP7;ENST00000464839.5_1_1:89591553-89613456:-|nuORF	ENSG00000213512|ENST00000294671|GBP7	ENSG00000213512|ENST00000294671|GBP7	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.3163452148438	2	526.292756	1050.57096	1.5099	0.00079467	-1.14	-0.00059996	0.36997	0.00019471	526.2921845413636	135.82	0.51735	135.82	135.69	136.21	0					20	10	3	0	0	0	0.028476	1	15818	15818		25.45	0	1	114790			23806	9131	19468	19491	26496	26496					0.04769725614710296
KKKIKQNHGN	10	Unmodified	_KKKIKQNHGN_					0	0	0			REV__L1PB1_dup5905|chr7:93807211-93809400:+|8.337698263303487|0.2056128638309657|5.34|416.0|17|1|sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|8.337698263303487|0.2056128638309657|5.34|416.0|17|1|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8568115234375	2	597.856921	1193.69929	-1.5377	-0.00091935	0.67572	0.00040398	-0.86202	-0.00051536	597.8570606153338	148.28	4.8676	146.85	145.38	150.25	-1.435					291	102	5	0	0	0	0.73378	1	14454	14454		26.693	6.6961	1	767860	+		23807	28593	19469	19492	26497	26497					0.11018705648461946
KKKKELAL	8	Unmodified	_KKKKELAL_					0	0	0		chr8:27605312-27608938|174|635.79|0.45|10.46|-|0|None,CLU|1	chr8:27605312-27608938|174|635.79|0.45|10.46|-|0|None,CLU|1	chr8:27605312-27608938|174|635.79|0.45|10.46|-|0|None,CLU|1	MULTI-SECPEP	OvCa9_classI_Rep3	3	479.2807922363281	2	479.326402	956.638252	-0.46967	-0.00022513	-2.9172	-0.0013983	-3.3868	-0.0016234	479.32397514193167	96.312	0.35223	94.484	94.32	94.672	-1.8286					9	6	2	0	0	0	0.028476	1	6308	6308		60.972	0	1	7065			23808	545	19470	19493	26498	26498					0.15819800616316115
KKKKKPTFF	9	Unmodified	_KKKKKPTFF_					0	0	0			REV__ENST00000360315.7_1_19:19618016-19618130:+|nuORF	REV__ENST00000360315.7_1_19:19618016-19618130:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.8126220703125	2	576.368601	1150.72265	-0.32963	-0.00018999	1.0358	0.00059701	0.70618	0.00040702	576.3691641908495	60.667	1.1015	60.667	60.314	61.416	0					31	25	2	0	0	0	0.027462	1	5372	5372		18.324	0.95945	1	191510	+		23809	24829	19471	19494	26499	26499					0.15331751433086538
KKKKLASVC	9	Unmodified	_KKKKLASVC_					0	0	0			REV__ENST00000252804.8_1_2:1636874-1637096:-|nuORF	REV__ENST00000252804.8_1_2:1636874-1637096:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	502.8145446777344	2	502.817887	1003.62122	-4.451	-0.0022381	-3.1247	-0.0015712	-7.5757	-0.0038092	502.8162192928447	153.83	1.4178	153.6	153.28	154.7	-0.22696					88	30	4	0	0	0	0.6653	1	15631	15631		24.203	5.8783	1	684970	+		23810	23869	19472	19495	26500	26500					0.11955556738860196
KKKKNFSHY	9	Unmodified	_KKKKNFSHY_					0	0	0			REV__ENST00000261601.7_1_18:214569-214626:+|nuORF	REV__ENST00000261601.7_1_18:214569-214626:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	591.3230590820312	2	590.33529	1178.65603	0.4181	0.00024682	4.4108	0.0026038	4.8288	0.0028506	590.3384943121489	42.652	0.93768	39.943	39.621	40.559	-2.7097					37	18	3	0	0	0	0.027462	1	2280	2280		27.882	0	1	40681	+		23811	23955	19473	19496	26501	26501					0.0738451587117197
KKKKRFSFKK	10	Unmodified	_KKKKRFSFKK_					0	0	0		ENSG00000277443|ENST00000612661|MARCKS	ENSG00000277443|ENST00000612661|MARCKS	ENSG00000277443|ENST00000612661|MARCKS	MULTI-MSMS	OvCa99_classI_Rep5	1	442.2903747558594	3	442.290713	1323.85031	0.27296	0.00012073	-0.31551	-0.00013955	-0.042548	-1.8819E-05	442.29046573666074	26.471	1.0007	26.471	26.042	27.043	0					50	19	4	0	0	0	0.5635	1	678	678		46.457	0	1	329590			23812	9584	19474	19497	26502	26502					0.20133892027115508
KKKKTKQSV	9	Unmodified	_KKKKTKQSV_					0	0	0			REV__ENST00000528878.1_1_7:64465174-64465315:-|nuORF	REV__ENST00000528878.1_1_7:64465174-64465315:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.8125	2	537.853316	1073.69208	-0.79157	-0.00042575	-1.1371	-0.00061157	-1.9286	-0.0010373	537.8528803035952	28.365	0.29892	28.365	28.14	28.439	0					7	5	2	0	0	0	0.027026	1	910	910		107.01	8.3781	1	19088	+		23813	27178	19475	19498	26503	26503					0.15817973048046952
KKKLDYIRKEK	11	Unmodified	_KKKLDYIRKEK_					0	0	0			REV__ENSG00000243710|ENST00000372492|CFAP57	REV__ENSG00000243710|ENST00000372492|CFAP57	MULTI-MSMS	OvCa9_classI_Rep4_	4	483.6357727050781	3	483.636438	1447.88748	-6.2422	-0.003019	2.3611	0.0011419	-3.8811	-0.001877	483.63750108223127	159.48	3.4267	157.89	156.66	160.09	-1.5894					215	86	4	0	0	0	0.72577	1	15697	15697		5.4129	2.0042	1	104790	+		23814	23467	19476	19499	26504	26504					0.18145518782193903
KKKLEEVQRLQ	11	Unmodified	_KKKLEEVQRLQ_					0	0	0			REV__ENSG00000029725|ENST00000537505|RABEP1	REV__ENSG00000029725|ENST00000537505|RABEP1	MULTI-MSMS	OvCa9_classI_Rep3	3	466.95245361328125	3	466.952426	1397.83545	1.5916	0.00074322	-2.0144	-0.00094062	-0.42273	-0.00019739	466.9514863874782	62.714	2.1935	59.681	59.362	61.555	-3.0339					129	43	5	0	0	0	0.68709	1	2277	2277		34.087	2.0524	1	504980	+		23815	16583	19477	19500	26505	26505					0.1524435536848614
KKKLHRKN	8	Unmodified	_KKKLHRKN_					0	0	0			REV__ENST00000592124.1_1_19:34756504-34790780:+|nuORF	REV__ENST00000592124.1_1_19:34756504-34790780:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.3195190429688	2	526.345992	1050.67743	-1.181	-0.0006216	1.9593	0.0010313	0.77837	0.00040969	526.3468241745886	101.4	0.48549	99.136	99.02	99.506	-2.2665					14	9	2	0	0	0	0.028476	1	9125	9125		19.36	2.8868	1	28298	+		23816	24223	19478	19501	26506	26506					0.1541194569056188
KKKLKSGM	8	Unmodified	_KKKLKSGM_					0	0	0			REV__ENST00000424010.1_1_2:223185432-223186372:+|nuORF	REV__ENST00000424010.1_1_2:223185432-223186372:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	460.2918701171875	2	460.291505	918.568457	1.6438	0.0007566	2.5664	0.0011813	4.2102	0.0019379	460.2926612100012	137.61	0.75398	136.07	135.72	136.47	-1.5436					25	15	2	0	0	0	0.7327	1	13381	13381		8.8223	0	1	23916	+		23817	25637	19479	19502	26507	26507					0.10591598676080594
KKKLPPSSP	9	Unmodified	_KKKLPPSSP_					0	0	0			REV__ENST00000584437.5_1_17:56493464-56493545:-|nuORF	REV__ENST00000584437.5_1_17:56493464-56493545:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.7842102050781	2	491.30821	980.601866	2.1256	0.0010443	0.064619	3.1748E-05	2.1902	0.0010761	491.3080724187183	95.878	0.6732	95.878	95.495	96.168	0					30	15	3	0	0	0	0.027462	1	10517	10517		16.473	6.7675	1	852290	+		23818	27841	19480	19503	26508	26508					0.11078923719617251
KKKMAVKLE	9	Unmodified	_KKKMAVKLE_					0	0	0		ENST00000518121.5_1_8:38250464-38262066:+|nuORF;nc|ENSG00000165046|Q2VYF4-4|LETM2;nc|ENSG00000165046|Q2VYF4-3|LETM2;nc|ENSG00000165046|Q2VYF4-2|LETM2;ENSG00000165046|ENST00000379957|LETM2	ENST00000518121.5_1_8:38250464-38262066:+|nuORF	ENST00000518121.5_1_8:38250464-38262066:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.2922973632812	2	537.83882	1073.66309	1.6006	0.00086085	-2.1974	-0.0011818	-0.59679	-0.00032098	537.8373929197913	79.427	0.34463	79.427	79.24	79.585	0					13	8	2	0	0	0	0.027462	1	8107	8107		51.335	12.529	1	289510			23819	6513	19481	19504	26509	26509					0.12920112427400454
KKKMKEGI	8	Unmodified	_KKKMKEGI_					0	0	0			REV__ENSG00000031698|ENST00000234677|SARS1	REV__ENSG00000031698|ENST00000234677|SARS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.296142578125	2	481.296788	960.579022	-0.76225	-0.00036687	-3.4164	-0.0016443	-4.1786	-0.0020112	481.2950772231885	93.318	1.3581	90.81	90.513	91.871	-2.5072					61	28	4	0	0	0	0.71369	1	8162	8162		40.573	1.7665	1	573940	+		23820	16588	19482	19505	26510	26510					0.0971558133049939
KKKMRILI	8	Unmodified	_KKKMRILI_					0	0	0		nc|ENSG00000228696|Q8IVW1-2|ARL17A;ENSG00000228696|ENST00000450673|ARL17B;ENSG00000185829|ENST00000336125|ARL17A;nc|ENSG00000228696|Q8IVW1-4|ARL17A	nc|ENSG00000228696|Q8IVW1-2|ARL17A	nc|ENSG00000228696|Q8IVW1-2|ARL17A	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.3369750976562	2	515.351897	1028.68924	0.36149	0.00018629	1.176	0.00060605	1.5375	0.00079235	515.3530479461382	45.563	0.34552	45.563	45.454	45.8	0					12	7	2	0	0	0	0.028476	1	3190	3190		21.702	7.0382	1	108610			23821	8291	19483	19506	26511	26511					0.17604426389539185
KKKNRELNRMW	11	Unmodified	_KKKNRELNRMW_					0	0	0		ENST00000545737.5_1_12:28459732-28460593:+|nuORF	ENST00000545737.5_1_12:28459732-28460593:+|nuORF	ENST00000545737.5_1_12:28459732-28460593:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.6358337402344	3	501.617272	1501.82999	-6.9345	-0.0034784	-0.36798	-0.00018458	-7.3024	-0.003663	501.6169344886067	161.49	0.6142	159.86	159.52	160.14	-1.6239					23	14	2	0	0	0	0.026497	1	15984	15984		6.001	0	1	9142.3			23822	13526	19484	19507	26512	26512					0.0991435330497552
KKKNVTEFI	9	Unmodified	_KKKNVTEFI_					0	0	0		ENSG00000221954|ENST00000335238|OR4C12	ENSG00000221954|ENST00000335238|OR4C12	ENSG00000221954|ENST00000335238|OR4C12	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8302001953125	2	553.832049	1105.64954	-2.2198	-0.0012294	-1.4062	-0.0007788	-3.626	-0.0020082	553.8311075714116	139.08	3.9663	138.02	135.98	139.95	-1.0595					202	80	4	0	0	0	0.58665	1	11479	11479		33.516	1.5607	1	74733			23823	9238	19485	19508	26513	26513					0.10094577919812764
KKKPAAKKP	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))KKKPAAKKP_					1	0	0			REV__ENSG00000187837|ENST00000343677|H1-2	REV__ENSG00000187837|ENST00000343677|H1-2	MULTI-MSMS	OvCa9_classI_Rep2	2	519.34521484375	2	519.345126	1036.6757	3.6258	0.001883	-3.7301	-0.0019372	-0.10433	-5.4182E-05	519.3430850479069	25.669	1.4415	22.959	22.778	24.219	-2.7097					87	37	4	0	0	0	0.33652	1	285	285		58.782	11.125	1	632440	+		23824	18698	19486	19509	26514	26514					0.15882891881938122
KKKQLKPW	8	Unmodified	_KKKQLKPW_					0	0	0		nc|ENSG00000010244|O43670-3|ZNF207;nc|ENSG00000010244|O43670-2|ZNF207;nc|ENSG00000010244|O43670|ZNF207;ENSG00000010244|ENST00000394670|ZNF207;ENST00000394679.9_2_17:30677304-30677343:+|nuORF;ENST00000342555.10_1_17:30677304-30678493:+|nuORF;ENST00000580759.5_1_17:30677304-30678810:+|nuORF;ENST00000579634.5_1_17:30677304-30677361:+|nuORF;ENST00000582165.1_2_17:30677304-30678810:+|nuORF;ENST00000577324.1_1_17:30677304-30687987:+|nuORF	nc|ENSG00000010244|O43670-3|ZNF207	nc|ENSG00000010244|O43670-3|ZNF207	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3155517578125	2	528.339844	1054.66514	-0.24207	-0.00012789	-3.4262	-0.0018102	-3.6683	-0.0019381	528.3378865051387	69.355	0.53247	69.355	69.019	69.552	0					21	12	2	0	0	0	0.028476	1	6618	6618		20.482	4.8456	1	762800			23825	940	19487	19510	26515	26515					0.1399890922753002
KKKQNIFHWPS	11	Unmodified	_KKKQNIFHWPS_					0	0	0			REV__Harlequin-int_dup206|chr5:139527817-139528355:+|3.175785272454588|0.0887483034314105|5.16|423.0|15|3|sense	REV__Harlequin-int_dup206|chr5:139527817-139528355:+|3.175785272454588|0.0887483034314105|5.16|423.0|15|3|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.30987548828125	3	471.598094	1411.77245	0.62036	0.00029256	1.5949	0.00075214	2.2152	0.0010447	471.59893738581945	22.159	1.1585	20.82	20.22	21.378	-1.3386					31	22	2	0	0	0	0.025445	1	258	258		35.178	11.8	1	16943	+		23826	28181	19488	19511	26516	26516					0.08303834371054108
KKKREEAEKLR	11	Unmodified	_KKKREEAEKLR_					0	0	0		ENST00000508336.1_1_4:166469096-166469723:-|nuORF	ENST00000508336.1_1_4:166469096-166469723:-|nuORF	ENST00000508336.1_1_4:166469096-166469723:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	472.283935546875	3	472.287808	1413.8416	-6.0447	-0.0028549	-2.5284	-0.0011941	-8.5731	-0.004049	472.28675973301637	159.08	3.3809	157.81	156.71	160.09	-1.267					177	72	4	0	0	0	0.72483	1	13717	13717		17.833	0	1	110830			23827	12943	19489	19512	26517	26517					0.15122873599989362
KKKRFYLELRR	11	Unmodified	_KKKRFYLELRR_					0	0	0			REV__ENST00000332131.8_1_21:37431190-37432810:-|nuORF	REV__ENST00000332131.8_1_21:37431190-37432810:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	512.9859619140625	3	512.987693	1535.94125	-4.9038	-0.0025156	0.4465	0.00022905	-4.4573	-0.0022865	512.9879880478285	162.73	1.8375	162.51	160.84	162.68	-0.22697					96	36	4	0	0	0	0.72582	1	16571	16571		1.1482	0.77682	1	139950	+		23828	24541	19490	19513	26518	26518					0.19471736004584272
KKKRFYLELRR	11	Unmodified	_KKKRFYLELRR_					0	0	0			REV__ENST00000332131.8_1_21:37431190-37432810:-|nuORF	REV__ENST00000332131.8_1_21:37431190-37432810:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.985107421875	3	512.987693	1535.94125	-6.5915	-0.0033814	1.929	0.00098958	-4.6625	-0.0023918	512.9885265039754	160.8	2.6264	159.19	157.99	160.62	-1.6101					147	60	4	0	0	0	0.72582	1	15803	15803		3.026	1.503	1	58638	+		23829	24541	19490	19513	26519	26519					0.19471736004584272
KKKRKAGT	8	Unmodified	_KKKRKAGT_					0	0	0			REV__ENSG00000147606|ENST00000276609|SLC26A7	REV__ENSG00000147606|ENST00000276609|SLC26A7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.7881164550781	2	458.806168	915.597784	-2.1004	-0.00096366	-1.5484	-0.00071041	-3.6488	-0.0016741	458.80480849601133	148.29	0.24945	146.85	146.68	146.93	-1.435					7	4	2	0	0	0	0.028476	1	14606	14606		8.2313	0	1	5797.3	+		23830	20075	19491	19514	26520	26520					0.13660879016561012
KKKSKEKE	8	Unmodified	_KKKSKEKE_					0	0	0			REV__nc|ENSG00000091986|Q76M96-2|CCDC80	REV__nc|ENSG00000091986|Q76M96-2|CCDC80	MULTI-MSMS	OvCa9_classI_Rep2	2	502.808837890625	2	502.808574	1003.60259	2.5495	0.0012819	-2.6997	-0.0013574	-0.15015	-7.5497E-05	502.80707536973654	26.202	0.53641	23.493	23.343	23.88	-2.7097					18	11	2	0	0	0	0.72896	1	339	339		37.159	1.5408	1	40133	+		23831	17259	19492	19515	26521	26521					0.10093718368671034
KKKSLFAFF	9	Unmodified	_KKKSLFAFF_					0	0	0		ENST00000426641.3_1_12:9795008-9795224:+|nuORF	ENST00000426641.3_1_12:9795008-9795224:+|nuORF	ENST00000426641.3_1_12:9795008-9795224:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.3341064453125	2	558.334227	1114.6539	1.418	0.00079173	1.3448	0.00075086	2.7628	0.0015426	558.3348203882426	32.25	1.185	29.555	28.968	30.153	-2.6954					65	35	2	0	0	0	0.71234	1	754	754		13.775	0.81615	1	36609			23832	11741	19493	19516	26522	26522					0.10116087133383189
KKKVQLTLFYF	11	Unmodified	_KKKVQLTLFYF_					0	0	0		ENST00000527958.5_1_11:117041336-117041564:+|nuORF	ENST00000527958.5_1_11:117041336-117041564:+|nuORF	ENST00000527958.5_1_11:117041336-117041564:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.28363037109375	3	472.286746	1413.83841	-4.4137	-0.0020845	-1.6408	-0.00077491	-6.0544	-0.0028594	472.28623594983816	156.93	2.47	155.39	154.2	156.67	-1.545					140	72	3	0	0	0	0.72507	1	15506	15506		14.694	5.0475	1	49755			23833	13246	19494	19517	26523	26523					0.14804230493245996
KKLAARYK	8	Unmodified	_KKLAARYK_					0	0	0			REV__nc|ENSG00000212643|Q15695|ZRSR2P1	REV__nc|ENSG00000212643|Q15695|ZRSR2P1	MULTI-MSMS	OvCa9_classI_Rep2	2	489.3138732910156	2	489.316369	976.618185	-2.9034	-0.0014207	-1.3918	-0.00068104	-4.2952	-0.0021017	489.3155696010777	150.8	1.5265	150.57	150.17	151.7	-0.22696					77	30	4	0	0	0	0.74595	1	15323	15323		14.664	0	1	380370	+		23834	21450	19495	19518	26524	26524					0.12894049676367558
KKLAKIAFF	9	Unmodified	_KKLAKIAFF_					0	0	0			REV__nc|ENSG00000065675|Q04759-3|PRKCQ	REV__nc|ENSG00000065675|Q04759-3|PRKCQ	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.3401489257812	2	533.344595	1064.67464	-6.1907	-0.0033018	-1.8486	-0.00098596	-8.0394	-0.0042878	533.3435201452669	156.94	1.5192	155.39	155.04	156.56	-1.545					135	41	5	0	0	0	0.64339	1	15522	15522		26.796	3.7536	1	1621700	+		23835	16802	19496	19519	26525	26525					0.14488677513008952
KKLAPTLIK	9	Unmodified	_KKLAPTLIK_					0	0	0			REV__ENSG00000132394|ENST00000254730|EEFSEC	REV__ENSG00000132394|ENST00000254730|EEFSEC	MULTI-MSMS	OvCa99_classI_Rep5	1	506.35137939453125	2	506.349877	1010.6852	2.2937	0.0011614	0.2082	0.00010542	2.5019	0.0012668	506.3498183787087	80.057	0.9614	80.057	79.783	80.744	0					48	22	4	0	0	0	0.12515	1	8184	8184		90.37	5.209	1	2619900	+		23836	19075	19497	19520	26526	26526					0.18028660167465205
KKLATEAIEQ	10	Unmodified	_KKLATEAIEQ_					0	0	0			REV__ENST00000403291.1_1_6:160134476-160134596:-|nuORF	REV__ENST00000403291.1_1_6:160134476-160134596:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.3944702148438	2	565.824421	1129.63429	1.6596	0.00093904	-2.0536	-0.001162	-0.39402	-0.00022295	565.8229237234004	33.487	1.6381	30.699	30.359	31.997	-2.7881					114	32	6	0	0	0	0.02663	1	1000	1000		60.118	0	1	556400	+		23837	25425	19498	19521	26527	26527					0.07465666331927423
KKLDLVAYLS	10	Unmodified	_KKLDLVAYLS_					0	0	0			REV__nc|ENSG00000163793|Q8N7S2-2|DNAJC5G	REV__nc|ENSG00000163793|Q8N7S2-2|DNAJC5G	MULTI-MSMS	OvCa9_classI_Rep3	3	575.345458984375	2	575.347532	1148.68051	-6.2917	-0.0036199	2.5771	0.0014827	-3.7146	-0.0021372	575.3489585356984	154.97	1.0558	153.9	153.56	154.61	-1.073					68	25	4	0	0	0	0.71192	1	13327	13327		29.15	0	1	137860	+		23838	20887	19499	19522	26528	26528					0.1121173123403878
KKLEDEAAR	9	Unmodified	_KKLEDEAAR_					0	0	0		ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2;nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2	ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant	ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	530.2933959960938	2	530.293288	1058.57202	-0.57106	-0.00030283	0.21307	0.00011299	-0.35799	-0.00018984	530.2932941647349	44.621	1.194	41.912	41.603	42.797	-2.7097					53	23	3	0	0	0	0.13326	1	2545	2545		88.177	9.9132	1	328810			23839	8815	19500	19523	26529	26529					0.04507939983614051
KKLEDEAAR	9	Unmodified	_KKLEDEAAR_					0	0	0		ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2;nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2	ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant	ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.2942504882812	2	530.293288	1058.57202	-1.9405	-0.001029	1.3035	0.00069126	-0.63698	-0.00033778	530.293909155729	44.778	1.2913	41.739	41.514	42.805	-3.0385					71	24	4	0	0	0	0.025955	1	2252	2252		139.97	1.145	1	1647600			23840	8815	19500	19523	26530	26530					0.04507939983614051
KKLELITN	8	Unmodified	_KKLELITN_					0	0	0			REV__tr|A0A7D6VQ70|A0A7D6VQ70_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19005PE=4SV=1	REV__tr|A0A7D6VQ70|A0A7D6VQ70_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19005PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	479.8012390136719	2	479.800217	957.585882	-0.33287	-0.00015971	0.2917	0.00013996	-0.041172	-1.9755E-05	479.80012566325394	97.013	1.6745	95.184	94.879	96.554	-1.8286					75	32	4	0	0	0	0.64371	1	6422	6422		54.776	0.053964	1	303350	+		23841	31302	19501	19524	26531	26531					0.10539217482710228
KKLENNIDH	9	Unmodified	_KKLENNIDH_					0	0	0			REV__nc|ENSG00000077800|O75344-3|FKBP6	REV__nc|ENSG00000077800|O75344-3|FKBP6	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.7997436523438	2	555.798737	1109.58292	0.16697	9.2802E-05	-0.71782	-0.00039896	-0.55085	-0.00030616	555.7983468129146	62.61	1.1203	59.152	58.765	59.885	-3.4577					56	22	5	0	0	0	0.3076	1	4366	4366		62.107	1.8135	1	450480	+		23842	17016	19502	19525	26532	26532					0.03251342357907561
KKLENNIDH	9	Unmodified	_KKLENNIDH_					0	0	0			REV__nc|ENSG00000077800|O75344-3|FKBP6	REV__nc|ENSG00000077800|O75344-3|FKBP6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	555.798737	1109.58292	-0.78217	-0.00043473	0.33011	0.00018347	-0.45207	-0.00025126	555.7988325568521	61.786	1.0665	59.027	58.515	59.582	-2.7593	-0.062497	0.00069957	NaN	62.107	55	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	192580	+		23843	17016	19502	19525							0.03251342357907561
KKLENNIDH	9	Unmodified	_KKLENNIDH_					0	0	0			REV__nc|ENSG00000077800|O75344-3|FKBP6	REV__nc|ENSG00000077800|O75344-3|FKBP6	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	555.798737	1109.58292	0.16697	9.2802E-05	-0.71782	-0.00039896	-0.55085	-0.00030616	555.7983468129146	62.61	1.1203	59.152	58.765	59.885	-3.4577	0.062497	-0.0004653	NaN	62.107	56	22	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	450480	+		23844	17016	19502	19525							0.03251342357907561
KKLFDVKATG	10	Unmodified	_KKLFDVKATG_					0	0	0			REV__ENSG00000133706|ENST00000394434|LARS1	REV__ENSG00000133706|ENST00000394434|LARS1	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8290405273438	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.64697	1	14378	14378		36.447	4.4919	1	245610	+		23845	19154	19503	19526	26533	26533					0.10094577919790026
KKLFDVKATG	10	Unmodified	_KKLFDVKATG_					0	0	0			REV__ENSG00000133706|ENST00000394434|LARS1	REV__ENSG00000133706|ENST00000394434|LARS1	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8292236328125	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.64697	1	11945	11945		36.447	2.2742	1	308210	+		23846	19154	19503	19526	26534	26534					0.10094577919790026
KKLFDVKATG	10	Unmodified	_KKLFDVKATG_					0	0	0			REV__ENSG00000133706|ENST00000394434|LARS1	REV__ENSG00000133706|ENST00000394434|LARS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8306884765625	2	553.832049	1105.64954	0.13277	7.3535E-05	-3.4573	-0.0019148	-3.3245	-0.0018412	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.6349	1	14026	14026		37.812	5.8567	1	400120	+		23847	19154	19503	19526	26535	26535					0.10094577919790026
KKLFFFFFF	9	Unmodified	_KKLFFFFFF_					0	0	0			REV__AluJb_dup51192|chr7:107770157-107770196:-|1.9495540912656453|0.0004798219220502|11.99|429.0|5|3|anti-sense	REV__AluJb_dup51192|chr7:107770157-107770196:-|1.9495540912656453|0.0004798219220502|11.99|429.0|5|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	424.9097900390625	3	424.238956	1269.69504	0.89069	0.00037787	-1.882	-0.00079841	-0.99129	-0.00042054	424.57356946991115	65.391	0.35376	62.695	62.417	62.771	-2.6958					8	6	2	0	0	0	0.027462	1	5007	5007		13.454	0	1	7121.7	+		23848	15595	19504	19527	26536	26536					0.07097848172816157
KKLFSVVLILL	11	Unmodified	_KKLFSVVLILL_					0	0	0			REV__nc|ENSG00000075945|Q92845-4|KIFAP3	REV__nc|ENSG00000075945|Q92845-4|KIFAP3	MSMS	OvCa99_classI_Rep5	1	636.914306640625	2	636.936317	1271.85808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.709	1	99.709	99.209	100.21	0								0	0	0	0.19474	1	11030	11030		8.6937	0	1		+		23849	16982	19505	19528	26537	26537					0.23302606504034884
KKLGEKIKK	9	Unmodified	_KKLGEKIKK_					0	0	0			REV__tr|A0A7D6VU81|A0A7D6VU81_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00965PE=4SV=1	REV__tr|A0A7D6VU81|A0A7D6VU81_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00965PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.3671875	2	536.366059	1070.71756	-0.63143	-0.00033868	-0.064607	-3.4653E-05	-0.69604	-0.00037333	536.3658082033546	50.603	0.57531	50.603	50.288	50.863	0					31	12	3	0	0	0	0.37135	1	3866	3866		54.776	7.119	1	1134900	+		23850	31659	19506	19529	26538	26538					0.18503447570446951
KKLGIPVVCH	10	Carbamidomethyl (C)	_KKLGIPVVC(Carbamidomethyl (C))H_	KKLGIPVVC(1)H		KKLGIPVVC(41)H		0	1	0		CHDH|p.C514Hfs*3|1|0.4|ENSG00000016391|chr3:53818021-53818022|CA/-|frameshift_variant;ENSG00000016391|ENST00000315251|CHDH	CHDH|p.C514Hfs*3|1|0.4|ENSG00000016391|chr3:53818021-53818022|CA/-|frameshift_variant	CHDH|p.C514Hfs*3|1|0.4|ENSG00000016391|chr3:53818021-53818022|CA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.843505859375	2	575.841894	1149.66923	-1.5734	-0.00090602	3.9593	0.0022799	2.3859	0.0013739	575.8439449675558	145.55	4.7888	144.12	142.78	147.57	-1.4357					360	93	6	0	0	0	0.61209	1	14415	14415		40.573	12.69	1	565210			23851	232	19507	19530	26539	26539	2				0.10038630658891634
KKLGISTE	8	Unmodified	_KKLGISTE_					0	0	0		tr|A0A553SGX9|A0A553SGX9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_11740PE=4SV=1	tr|A0A553SGX9|A0A553SGX9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_11740PE=4SV=1	tr|A0A553SGX9|A0A553SGX9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_11740PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	438.26470947265625	2	438.263468	874.512382	0.84218	0.0003691	-0.98816	-0.00043308	-0.14599	-6.398E-05	438.2629789985466	60.372	1.2205	60.372	60.195	61.416	0					63	28	3	0	0	0	0.745	1	5275	5275		29.15	0	1	1208900			23852	33206	19508	19531	26540	26540					0.07010669040221273
KKLGKQKM	8	Unmodified	_KKLGKQKM_					0	0	0		CENPE|p.E796Gfs*13|1|0.22|ENSG00000138778|chr4:103159224-103159225|-/ACAAGACC|frameshift_variant	CENPE|p.E796Gfs*13|1|0.22|ENSG00000138778|chr4:103159224-103159225|-/ACAAGACC|frameshift_variant	CENPE|p.E796Gfs*13|1|0.22|ENSG00000138778|chr4:103159224-103159225|-/ACAAGACC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	480.8009948730469	2	480.80478	959.595007	-3.5276	-0.0016961	-4.3152	-0.0020748	-7.8427	-0.0037708	480.80256125573777	150.83	1.6209	150.61	150.17	151.79	-0.22696					93	32	4	0	0	0	0.74971	1	15270	15270		26.796	1.3459	1	676150			23853	221	19509	19532	26541	26541					0.1135928756739304
KKLGKRKK	8	Unmodified	_KKLGKRKK_					0	0	0			REV__tr|A0A7D7AD73|A0A7D7AD73_9CLOTClassCsortaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22030PE=4SV=1	REV__tr|A0A7D7AD73|A0A7D7AD73_9CLOTClassCsortaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22030PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.3180847167969	2	493.353286	984.692019	-0.31515	-0.00015548	-1.7329	-0.00085494	-2.0481	-0.0010104	493.35238646987176	103.72	0.59232	103.14	102.83	103.42	-0.57639					17	11	2	0	0	0	0.028476	1	9579	9579		19.36	0	1	5605.5	+		23854	32693	19510	19533	26542	26542					0.1990601783869579
KKLGVAHEEIQ	11	Unmodified	_KKLGVAHEEIQ_					0	0	0		CCDC30|p.Q477Sfs*15|1|0.05|ENSG00000186409|chr1:42611022-42611022|A/-|frameshift_variant;ENSG00000186409|ENST00000657597|CCDC30	CCDC30|p.Q477Sfs*15|1|0.05|ENSG00000186409|chr1:42611022-42611022|A/-|frameshift_variant	CCDC30|p.Q477Sfs*15|1|0.05|ENSG00000186409|chr1:42611022-42611022|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	417.9068908691406	3	417.906705	1250.69829	-0.66582	-0.00027825	-0.54093	-0.00022606	-1.2068	-0.00050431	417.90655321620505	51.424	2.2109	48.251	47.972	50.183	-3.1734					136	43	6	0	0	0	0.17873	1	3044	3044		82.831	10.587	1	5317600			23855	194	19511	19534	26543	26543					0.08296446488884612
KKLHKALQD	9	Unmodified	_KKLHKALQD_					0	0	0			REV__nc|ENSG00000122435|Q9NUP7-2|TRMT13	REV__nc|ENSG00000122435|Q9NUP7-2|TRMT13	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.761474609375	2	540.82984	1079.64513	1.1442	0.00061883	-1.9383	-0.0010483	-0.79409	-0.00042947	541.3296724272532	138.95	0.53107	138.95	138.69	139.22	0					15	10	2	0	0	0	0.027459	1	16212	16212		29.17	0	1	87994	+		23856	18597	19512	19535	26544	26544					0.10849113496897189
KKLHLRALGM	10	Unmodified	_KKLHLRALGM_					0	0	0		ENST00000472940.5_1_17:58003798-58008230:+|nuORF	ENST00000472940.5_1_17:58003798-58008230:+|nuORF	ENST00000472940.5_1_17:58003798-58008230:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	583.8590087890625	2	583.86316	1165.71177	-4.259	-0.0024867	-3.0218	-0.0017643	-7.2808	-0.004251	583.8612282732444	154.9	1.2136	154.67	154.34	155.56	-0.22696					82	33	4	0	0	0	0.82648	1	15816	15816		15.642	4.1308	1	148650			23857	12401	19513	19536	26545	26545					0.1355402578712983
KKLHNLLLF	9	Unmodified	_KKLHNLLLF_					0	0	0			REV__tr|A0A7D6VWM1|A0A7D6VWM1_9CLOTM23familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04700PE=4SV=1	REV__tr|A0A7D6VWM1|A0A7D6VWM1_9CLOTM23familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04700PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.7875366210938	2	563.360776	1124.707	0.51661	0.00029104	-1.6481	-0.00092849	-1.1315	-0.00063745	563.3599109015502	105.34	0.30744	105.34	105.18	105.49	0					10	6	2	0	0	0	0.027462	1	11837	11837		31.955	0	1	173980	+		23858	31751	19514	19537	26546	26546					0.14963464916013436
KKLHWALKGAS	11	Unmodified	_KKLHWALKGAS_					0	0	0		ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.K2074Efs*10|1|0.06|ENSG00000183914|chr17:7786212-7786213|-/TGAGG|frameshift_variant	ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MULTI-MSMS	OvCa9_classI_Rep2	2	619.86865234375	2	619.87204	1237.72953	-3.8587	-0.0023919	-0.31006	-0.00019219	-4.1687	-0.0025841	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.69455	2	15279	15170;15279		31.53	10.583	1	492670			23859	8123	19515	19538	26547;26548	26548					0.1201706431365892
KKLHWALKGAS	11	Unmodified	_KKLHWALKGAS_					0	0	0		ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.K2074Efs*10|1|0.06|ENSG00000183914|chr17:7786212-7786213|-/TGAGG|frameshift_variant	ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8692626953125	2	619.87204	1237.72953	-3.6059	-0.0022352	-0.65337	-0.00040501	-4.2593	-0.0026402	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.69808	2	12785	12743;12785		30.318	0.94304	1	664560			23860	8123	19515	19538	26549;26550	26550					0.1201706431365892
KKLHWALKGAS	11	Unmodified	_KKLHWALKGAS_					0	0	0		ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.K2074Efs*10|1|0.06|ENSG00000183914|chr17:7786212-7786213|-/TGAGG|frameshift_variant	ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8680419921875	2	619.87204	1237.72953	-3.1194	-0.0019336	-1.2014	-0.00074472	-4.3208	-0.0026783	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.69808	1	15046	15046		30.318	0	1	806750			23861	8123	19515	19538	26551	26551					0.1201706431365892
KKLILEAAS	9	Unmodified	_KKLILEAAS_					0	0	0		tr|A0A553SFT9|A0A553SFT9_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_09465PE=4SV=1	tr|A0A553SFT9|A0A553SFT9_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_09465PE=4SV=1	tr|A0A553SFT9|A0A553SFT9_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_09465PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.7646484375	2	486.808042	971.601532	-0.35513	-0.00017288	0.13035	6.3454E-05	-0.22479	-0.00010943	486.80799917509967	29.846	0.35088	29.846	29.735	30.086	0					10	6	3	0	0	0	0.027462	1	1097	1097		26.693	3.6504	1	35718			23862	33077	19516	19539	26552	26552					0.11459503999753906
KKLKLGQG	8	Unmodified	_KKLKLGQG_					0	0	0			REV__ENSG00000170260|ENST00000335870|ZNF212	REV__ENSG00000170260|ENST00000335870|ZNF212	MULTI-MSMS	OvCa9_classI_Rep2	2	436.2914123535156	2	436.28982	870.565087	0.50693	0.00022117	4.2832	0.0018687	4.7902	0.0020899	436.29156887363246	134.35	1.4687	134.12	133.85	135.32	-0.22696					61	29	3	0	0	0	0.73626	2	13320	13309;13320		33.516	6.7195	1	94786	+		23863	21524	19517	19540	26553;26554	26554					0.12462671893706556
KKLKPLKSI	9	Unmodified	_KKLKPLKSI_					0	0	0			REV__nc|ENSG00000165383|Q8N456-2|LRRC18	REV__nc|ENSG00000165383|Q8N456-2|LRRC18	MSMS	OvCa9_classI_Rep3	3	527.8709106445312	2	527.870977	1053.7274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.03	1	118	117.5	118.5	-1.0271								0	0	0	0.22801	1	9008	9008		21.96	1.9631	1		+		23864	21084	19518	19541	26555	26555					0.2026863557582601
KKLKQEELI	9	Unmodified	_KKLKQEELI_					0	0	0		tr|A0A7D6ZW52|A0A7D6ZW52_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_06615PE=4SV=1	tr|A0A7D6ZW52|A0A7D6ZW52_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_06615PE=4SV=1	tr|A0A7D6ZW52|A0A7D6ZW52_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_06615PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	564.8528442382812	2	564.852981	1127.69141	-0.41305	-0.00023331	0.15816	8.9335E-05	-0.25489	-0.00014398	564.852966206484	43.46	0.81022	43.46	43.185	43.995	0					51	18	4	0	0	0	0.40667	1	2894	2894		51.335	5.3632	1	1941200			23865	35825	19519	19542	26556	26556					0.13267133608314907
KKLKRELVR	9	Unmodified	_KKLKRELVR_					0	0	0			REV__ENSG00000146540|ENST00000397098|C7orf50	REV__ENSG00000146540|ENST00000397098|C7orf50	MULTI-SECPEP	OvCa9_classI_Rep3	3	585.3501586914062	2	585.395682	1168.77681	-1.3684	-0.00080104	-3.4385	-0.0020129	-4.8069	-0.0028139	585.3934742665318	73.106	0.39406	70.619	70.382	70.776	-2.4873					11	7	2	0	0	0	0.027462	1	3511	3511		21.96	5.4867	1	13898	+		23866	20021	19520	19543	26557	26557					0.19917343584643277
KKLKRELVR	9	Unmodified	_KKLKRELVR_					0	0	0			REV__ENSG00000146540|ENST00000397098|C7orf50	REV__ENSG00000146540|ENST00000397098|C7orf50	MULTI-SECPEP	OvCa9_classI_Rep3	3	585.3489379882812	2	585.395682	1168.77681	-1.4296	-0.00083688	3.046	0.0017831	1.6164	0.00094624	585.3974378262717	73.303	0.24714	70.816	70.677	70.925	-2.4873					7	4	2	0	0	0	0.027462	1	3557	3557		29.15	10.825	1	6238.4	+		23867	20021	19520	19543	26558	26558					0.19917343584643277
KKLLFRVLL	9	Unmodified	_KKLLFRVLL_					0	0	0			REV__ENST00000454360.1_1_22:17054334-17055434:+|nuORF	REV__ENST00000454360.1_1_22:17054334-17055434:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	565.8236083984375	2	565.394619	1128.77469	-1.513	-0.00085546	1.3887	0.00078514	-0.12438	-7.0326E-05	565.395260364739	34.392	1.089	31.682	31.267	32.356	-2.7097					46	21	3	0	0	0	0.027462	1	1342	1342		30.504	13.139	1	37083	+		23868	26002	19521	19544	26559	26559					0.2154491484684513
KKLLLILSL	9	Unmodified	_KKLLLILSL_					0	0	0			REV__nc|ENSG00000288550|Q8NAC3|IL17RC	REV__nc|ENSG00000288550|Q8NAC3|IL17RC	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2804565429688	2	520.875728	1039.7369	0.15689	8.1719E-05	2.001	0.0010423	2.1579	0.001124	520.8768527349903	102	0.21567	102	101.82	102.04	0					6	4	2	0	0	0	0.027462	1	11358	11358		25.45	8.0852	1	59295	+		23869	29206	19522	19545	26560	26560					0.21862403861382518
KKLLMWQQRRK	11	Unmodified	_KKLLMWQQRRK_					0	0	0		ENST00000546604.5_1_12:56189840-56194394:-|nuORF	ENST00000546604.5_1_12:56189840-56194394:-|nuORF	ENST00000546604.5_1_12:56189840-56194394:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	505.6402587890625	3	505.641529	1513.90276	-0.11451	-5.7899E-05	-2.9162	-0.0014745	-3.0307	-0.0015324	505.6400666024355	33.176	0.44447	33.176	32.989	33.434	0					29	8	4	0	0	0	0.72545	1	1513	1513		9.6461	0	1	294190			23870	13537	19523	19546	26561	26561					0.16636107098383945
KKLLQRCF	8	Unmodified	_KKLLQRCF_					0	0	0		ENSG00000203784|ENST00000368747|LELP1	ENSG00000203784|ENST00000368747|LELP1	ENSG00000203784|ENST00000368747|LELP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.3035278320312	2	518.310229	1034.60591	1.7458	0.00090485	-2.5828	-0.0013387	-0.83699	-0.00043382	518.3086682222464	87.715	0.99084	87.715	87.096	88.087	0					35	23	2	0	0	0	0.028476	1	9278	9278		35.201	12.164	1	541950			23871	8932	19524	19547	26562	26562					0.08998689941654447
KKLLTADAEP	10	Unmodified	_KKLLTADAEP_					0	0	0			REV__nc|ENSG00000139890|Q8IYK8-2|REM2	REV__nc|ENSG00000139890|Q8IYK8-2|REM2	MULTI-SECPEP	OvCa9_classI_Rep2	2	542.333251953125	2	543.313689	1084.61282	-0.4655	-0.00025291	-1.1277	-0.00061269	-1.5932	-0.0008656	543.3130167172361	123.15	0.49502	122.93	122.66	123.15	-0.21803					14	9	2	0	0	0	0.027088	1	11910	11910		34.173	14.813	1	15882	+		23872	19641	19525	19548	26563	26563					0.07390281303196389
KKLLVNLHG	9	Unmodified	_KKLLVNLHG_					0	0	0			REV__tr|A0A553SFD4|A0A553SFD4_NIACIAdeninedeaminaseOS=NialliacirculansOX=1397GN=adePE=3SV=1	REV__tr|A0A553SFD4|A0A553SFD4_NIACIAdeninedeaminaseOS=NialliacirculansOX=1397GN=adePE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	511.3271484375	2	511.329476	1020.6444	-3.9215	-0.0020052	-0.26328	-0.00013462	-4.1848	-0.0021398	511.32921715256015	153.82	1.2958	153.59	153.28	154.58	-0.22696					76	27	4	0	0	0	0.6959	3	15684	15684;15689;15695		19.36	1.0356	1	348680	+		23873	29565	19526	19549	26564;26565;26566	26564					0.13490318847857452
KKLLVNLHG	9	Unmodified	_KKLLVNLHG_					0	0	0			REV__tr|A0A553SFD4|A0A553SFD4_NIACIAdeninedeaminaseOS=NialliacirculansOX=1397GN=adePE=3SV=1	REV__tr|A0A553SFD4|A0A553SFD4_NIACIAdeninedeaminaseOS=NialliacirculansOX=1397GN=adePE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	511.3270263671875	2	511.329476	1020.6444	-5.3559	-0.0027386	0.93899	0.00048013	-4.4169	-0.0022585	511.3298778479252	153.96	1.1884	152.95	152.62	153.81	-1.0076					68	24	4	0	0	0	0.65476	1	13183	13183		25.45	7.1258	1	338570	+		23874	29565	19526	19549	26567	26567					0.13490318847857452
KKLLVNLHG	9	Unmodified	_KKLLVNLHG_					0	0	0			REV__tr|A0A553SFD4|A0A553SFD4_NIACIAdeninedeaminaseOS=NialliacirculansOX=1397GN=adePE=3SV=1	REV__tr|A0A553SFD4|A0A553SFD4_NIACIAdeninedeaminaseOS=NialliacirculansOX=1397GN=adePE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.32757568359375	2	511.329476	1020.6444	-4.4323	-0.0022664	-0.073534	-3.76E-05	-4.5058	-0.002304	511.3293417529648	154.42	1.6613	152.97	152.67	154.33	-1.4516					104	42	5	0	0	0	0.64339	2	15335	15335;15358		26.796	2.5934	1	1662600	+		23875	29565	19526	19549	26568;26569	26568					0.13490318847857452
KKLPGFQTL	9	Unmodified	_KKLPGFQTL_					0	0	0		nc|ENSG00000012504|Q96RI1-5|NR1H4;nc|ENSG00000012504|Q96RI1-2|NR1H4;ENSG00000012504|ENST00000392986|NR1H4;nc|ENSG00000012504|Q96RI1-4|NR1H4;nc|ENSG00000012504|Q96RI1|NR1H4	nc|ENSG00000012504|Q96RI1-5|NR1H4	nc|ENSG00000012504|Q96RI1-5|NR1H4	MULTI-MSMS	OvCa99_classI_Rep5	1	516.3148193359375	2	516.316035	1030.61752	0.22946	0.00011847	-4.073	-0.002103	-3.8436	-0.0019845	516.3138686677379	161.44	1.3688	161.44	161.11	162.48	0					57	26	4	0	0	0	0.60342	1	18962	18962		31.53	1.0262	1	928880			23876	975	19527	19550	26570	26570					0.10343210236646883
KKLPGPKPAS	10	Unmodified	_KKLPGPKPAS_					0	0	0			REV__CKAP5|p.W1001Afs*3|1|0.12|ENSG00000175216|chr11:46770973-46770974|AG/-|frameshift_variant	REV__CKAP5|p.W1001Afs*3|1|0.12|ENSG00000175216|chr11:46770973-46770974|AG/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	511.8246765136719	2	511.821484	1021.62842	0.81596	0.00041763	2.6812	0.0013723	3.4972	0.0017899	511.8231470994641	158.52	0.66357	158.52	158.23	158.89	0					32	13	3	0	0	0	0.67931	1	18577	18577		32.812	2.9709	1	371280	+		23877	16146	19528	19551	26571	26571					0.11846612610941065
KKLPGYIMP	9	Unmodified	_KKLPGYIMP_					0	0	0		ENST00000301919.8_1_11:105892051-105892183:-|nuORF	ENST00000301919.8_1_11:105892051-105892183:-|nuORF	ENST00000301919.8_1_11:105892051-105892183:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.769775390625	2	523.806988	1045.59942	-0.35755	-0.00018728	2.266	0.0011869	1.9084	0.00099966	523.808068445268	98.796	1.4421	97.903	97.658	99.1	-0.89306					38	28	2	0	0	0	0.027462	1	9042	9042		40.573	7.057	1	54358			23878	10194	19529	19552	26572	26572					0.07844751990296572
KKLPGYIMP	9	Unmodified	_KKLPGYIMP_					0	0	0		ENST00000301919.8_1_11:105892051-105892183:-|nuORF	ENST00000301919.8_1_11:105892051-105892183:-|nuORF	ENST00000301919.8_1_11:105892051-105892183:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	523.806988	1045.59942	-0.69561	-0.00036436	3.3307	0.0017446	2.6351	0.0013803	523.8084876226725	99.639	0.57094	97.954	97.727	98.297	-1.685	0.037156	0.00026369	NaN	24.203	29	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48834			23879	10194	19529	19552							0.07844751990296572
KKLPKKFIK	9	Unmodified	_KKLPKKFIK_					0	0	0			REV__ENST00000526156.1_1_11:4107651-4113025:+|nuORF	REV__ENST00000526156.1_1_11:4107651-4113025:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.3944702148438	2	565.394619	1128.77469	1.794	0.0010143	-2.0217	-0.0011431	-0.22775	-0.00012877	565.3932909276965	34.314	1.2515	31.526	31.2	32.451	-2.7881					66	24	4	0	0	0	0.55588	1	1000	1000		37.159	1.5408	1	178170	+		23880	21270	19530	19553	26573	26573					0.21544914846822394
KKLPSLKQVNS	11	Unmodified	_KKLPSLKQVNS_					0	0	0		nc|ENSG00000100095|Q9BYH1-5|SEZ6L;nc|ENSG00000100095|Q9BYH1-4|SEZ6L;nc|ENSG00000100095|Q9BYH1-7|SEZ6L;nc|ENSG00000100095|Q9BYH1-6|SEZ6L;ENSG00000100095|ENST00000248933|SEZ6L	nc|ENSG00000100095|Q9BYH1-5|SEZ6L	nc|ENSG00000100095|Q9BYH1-5|SEZ6L	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.58935546875	3	414.590717	1240.75032	0.16709	6.9273E-05	0.97296	0.00040338	1.1401	0.00047265	414.5910419987451	22.515	1.3412	21.121	20.671	22.012	-1.3935					97	37	4	0	0	0	0.72297	1	351	351		21.78	3.2494	1	89288			23881	2007	19531	19554	26574	26574					0.1395760990267263
KKLQHQPQP	9	Unmodified	_KKLQHQPQP_					0	0	0			REV__nc|ENSG00000257923|P39880-6|CUX1	REV__nc|ENSG00000257923|P39880-6|CUX1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.3171997070312	2	552.31964	1102.62473	1.138	0.00062857	-2.9899	-0.0016514	-1.8519	-0.0010228	552.3178204024694	84.831	0.77837	82.184	81.931	82.709	-2.6463					29	15	3	0	0	0	0.027462	1	7144	7144		29.15	0	1	164520	+		23882	23549	19532	19555	26575	26575					0.07751942837080605
KKLQKNIK	8	Unmodified	_KKLQKNIK_					0	0	0			REV__ENSG00000055044|ENST00000264279|NOP58	REV__ENSG00000055044|ENST00000264279|NOP58	MULTI-MSMS	OvCa99_classI_Rep5	1	500.3371887207031	2	500.337301	998.66005	-0.46955	-0.00023493	-0.016717	-8.3642E-06	-0.48627	-0.0002433	500.3372433032782	35.347	1.0734	35.347	34.911	35.984	0					43	22	3	0	0	0	0.72896	1	1793	1793		37.159	1.9584	1	1901700	+		23883	16706	19533	19556	26576	26576					0.1606660536489244
KKLQQSMLE	9	Unmodified	_KKLQQSMLE_					0	0	0			REV__nc|ENSG00000108389|Q9NYA4|MTMR4	REV__nc|ENSG00000108389|Q9NYA4|MTMR4	MULTI-MSMS	OvCa99_classI_Rep5	1	552.8055419921875	2	552.807716	1103.60088	-0.99413	-0.00054956	-0.13373	-7.3927E-05	-1.1279	-0.00062349	552.8075171629388	27.22	0.64903	27.22	26.992	27.641	0					28	12	4	0	0	0	0.46356	1	786	786		45.972	1.8554	1	218360	+		23884	17885	19534	19557	26577	26577					0.05322341288388088
KKLRNGVEI	9	Unmodified	_KKLRNGVEI_					0	0	0		tr|A0A553SJA8|A0A553SJA8_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_16435PE=4SV=1	tr|A0A553SJA8|A0A553SJA8_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_16435PE=4SV=1	tr|A0A553SJA8|A0A553SJA8_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_16435PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8005981445312	2	528.82984	1055.64513	2.0333	0.0010753	3.2115	0.0016983	5.2448	0.0027736	528.8313856838557	137.54	0.48399	137.54	137.26	137.74	0					16	9	2	0	0	0	0.027462	1	16020	16020		53.351	19.179	1	57212			23885	33484	19535	19558	26578	26578					0.11953113496883816
KKLSSSDVA	9	Unmodified	_KKLSSSDVA_					0	0	0			REV__ENST00000467811.5_1_20:50704880-50715019:-|nuORF	REV__ENST00000467811.5_1_20:50704880-50715019:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.763427734375	2	467.763832	933.513111	0.11172	5.226E-05	-1.8391	-0.00086027	-1.7274	-0.00080801	467.7631207963405	143.15	0.69534	141.71	141.46	142.16	-1.4427					21	13	2	0	0	0	0.61208	1	14018	14018		30.504	2.6214	1	29477	+		23886	26212	19536	19559	26579	26579					0.04369463689283748
KKLSYLLATSA	11	Unmodified	_KKLSYLLATSA_					0	0	0		tr|A0A553SHV8|A0A553SHV8_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13685PE=3SV=1	tr|A0A553SHV8|A0A553SHV8_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13685PE=3SV=1	tr|A0A553SHV8|A0A553SHV8_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13685PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8566284179688	2	597.858264	1193.70197	-2.4902	-0.0014888	-0.84145	-0.00050307	-3.3317	-0.0019919	597.8575960796461	144.35	4.0594	144.12	142.06	146.12	-0.22696					210	81	4	0	0	0	0.72473	1	14568	14568		19.104	0.77911	1	136500			23887	33317	19537	19560	26580	26580					0.11287116262769814
KKLTEQYKKIY	11	Unmodified	_KKLTEQYKKIY_					0	0	0			REV__nc|ENSG00000166069|Q8N6Q1-2|TMCO5A	REV__nc|ENSG00000166069|Q8N6Q1-2|TMCO5A	MULTI-MSMS	OvCa9_classI_Rep3	3	481.2823486328125	3	481.285293	1440.83405	-6.3384	-0.0030506	3.0209	0.0014539	-3.3175	-0.0015966	481.2870113487174	158.36	2.5052	157.1	156.12	158.63	-1.267					137	61	3	0	0	0	0.72545	1	13663	13663		9.6461	0.43434	1	42599	+		23888	21154	19538	19561	26581	26581					0.1312672127969563
KKLTEQYKKIY	11	Unmodified	_KKLTEQYKKIY_					0	0	0			REV__nc|ENSG00000166069|Q8N6Q1-2|TMCO5A	REV__nc|ENSG00000166069|Q8N6Q1-2|TMCO5A	MULTI-MSMS	OvCa9_classI_Rep3	3	481.2824401855469	3	481.285293	1440.83405	-6.6786	-0.0032143	3.0221	0.0014545	-3.6565	-0.0017598	481.2868612614486	161.01	3.7232	159.65	158.49	162.21	-1.3523					206	77	3	0	0	0	0.72545	1	14059	14059		9.6461	0.43434	1	127690	+		23889	21154	19538	19561	26582	26582					0.1312672127969563
KKLTVESVPRI	11	Unmodified	_KKLTVESVPRI_					0	0	0			REV__ENST00000435941.1_1_X:122250823-122251621:-|nuORF	REV__ENST00000435941.1_1_X:122250823-122251621:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	424.2281188964844	3	423.934484	1268.78162	0.064371	2.7289E-05	0.76499	0.00032431	0.82936	0.0003516	423.93479906842833	71.512	0.63939	71.512	71.068	71.707	0					23	15	2	0	0	0	0.025864	1	6883	6883		28.577	4.3449	1	304310	+		23890	25778	19539	19562	26583	26583					0.15798182936759986
KKLVFGGLKQ	10	Unmodified	_KKLVFGGLKQ_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.3582153320312	2	559.358234	1116.70191	0.44355	0.0002481	-0.81676	-0.00045686	-0.37322	-0.00020876	559.3576984469746	99.145	1.8504	96.82	96.484	98.335	-2.3253					92	35	4	0	0	0	0.41408	1	8848	8848		66.429	0	1	566800	+		23891	20257	19540	19563	26584	26584					0.1482316105341397
KKLVLVFM	8	Unmodified	_KKLVLVFM_					0	0	0		tr|A0A553SMV1|A0A553SMV1_NIACIMembraneproteininsertaseYidCOS=NialliacirculansOX=1397GN=yidCPE=3SV=1	tr|A0A553SMV1|A0A553SMV1_NIACIMembraneproteininsertaseYidCOS=NialliacirculansOX=1397GN=yidCPE=3SV=1	tr|A0A553SMV1|A0A553SMV1_NIACIMembraneproteininsertaseYidCOS=NialliacirculansOX=1397GN=yidCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	489.3139953613281	2	489.314449	976.614345	-2.9034	-0.0014207	2.5319	0.0012389	-0.37155	-0.00018181	489.3155696010777	150.8	1.5265	150.57	150.17	151.7	-0.22696					77	30	4	0	0	0	0.74816	1	15276	15276		15.636	0.97212	1	380370			23892	33874	19541	19564	26585	26585					0.1251024385828714
KKLVPQNKV	9	Unmodified	_KKLVPQNKV_					0	0	0		tr|A0A7D6VSD9|A0A7D6VSD9_9CLOTSporulationintegralmembraneproteinYlbJOS=ClostridiumintestinaleOX=36845GN=ylbJPE=4SV=1	tr|A0A7D6VSD9|A0A7D6VSD9_9CLOTSporulationintegralmembraneproteinYlbJOS=ClostridiumintestinaleOX=36845GN=ylbJPE=4SV=1	tr|A0A7D6VSD9|A0A7D6VSD9_9CLOTSporulationintegralmembraneproteinYlbJOS=ClostridiumintestinaleOX=36845GN=ylbJPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	527.3419799804688	2	527.342584	1052.67061	2.2817	0.0012032	-2.4212	-0.0012768	-0.13953	-7.3579E-05	527.3412130770646	27.081	0.8382	24.371	24.073	24.911	-2.7097					49	23	3	0	0	0	0.67509	1	459	459		23.042	5.5745	1	32709			23893	35020	19542	19565	26586	26586					0.1463858801932929
KKLWFISAFS	10	Unmodified	_KKLWFISAFS_					0	0	0			REV__ENST00000462343.1_1_2:10266966-10267371:+|nuORF	REV__ENST00000462343.1_1_2:10266966-10267371:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	613.8528442382812	2	613.850242	1225.68593	-0.092856	-5.7E-05	2.4342	0.0014942	2.3413	0.0014372	613.8516638553616	52.148	1.2538	48.94	48.59	49.844	-3.208					68	24	4	0	0	0	0.49558	1	3107	3107		54.776	1.6874	1	578860	+		23894	21652	19543	19566	26587	26587					0.08211454816500918
KKLWFISAFS	10	Unmodified	_KKLWFISAFS_					0	0	0			REV__ENST00000462343.1_1_2:10266966-10267371:+|nuORF	REV__ENST00000462343.1_1_2:10266966-10267371:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	613.850242	1225.68593	-1.7531	-0.0010761	4.2733	0.0026232	2.5202	0.001547	613.8527109646258	51.789	1.1882	48.976	48.552	49.74	-2.8129	0.01818	0.0013616	NaN	54.776	57	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110920	+		23895	21652	19543	19566							0.08211454816500918
KKLWKQEVVI	10	Unmodified	_KKLWKQEVVI_					0	0	0		ENST00000394144.8_2_3:99979878-99998548:+|nuORF	ENST00000394144.8_2_3:99979878-99998548:+|nuORF	ENST00000394144.8_2_3:99979878-99998548:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	424.2694091796875	3	424.267574	1269.78089	2.1849	0.00092699	3.4621	0.0014688	5.647	0.0023958	424.26901414012116	62.593	1.0533	59.559	59.313	60.366	-3.0339					48	20	4	0	0	0	0.64697	2	2272	2272;2284		36.447	3.6962	1	93226			23896	11258	19544	19567	26588;26589	26588					0.1567938828768547
KKLWKQEVVI	10	Unmodified	_KKLWKQEVVI_					0	0	0		ENST00000394144.8_2_3:99979878-99998548:+|nuORF	ENST00000394144.8_2_3:99979878-99998548:+|nuORF	ENST00000394144.8_2_3:99979878-99998548:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		3	424.267574	1269.78089	-0.42552	-0.00018053	-3.5555	-0.0015085	-3.981	-0.001689	424.2658329208136	59.673	0.46576	59.673	59.452	59.918	0	0.057232	-0.0083463	NaN	36.447	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197720			23897	11258	19544	19567							0.1567938828768547
KKLYRVFDK	9	Unmodified	_KKLYRVFDK_					0	0	0		tr|A0A7D6VVR5|A0A7D6VVR5_9CLOTNicotinatephosphoribosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06060PE=3SV=1	tr|A0A7D6VVR5|A0A7D6VVR5_9CLOTNicotinatephosphoribosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06060PE=3SV=1	tr|A0A7D6VVR5|A0A7D6VVR5_9CLOTNicotinatephosphoribosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06060PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	599.3399047851562	2	598.861141	1195.70773	-0.43698	-0.00026169	4.0881	0.0024482	3.6512	0.0021865	598.8632013867966	40.109	0.23126	40.109	40.016	40.247	0					6	4	2	0	0	0	0.027462	1	2410	2410		21.96	1.9631	1	31528			23898	35231	19545	19568	26590	26590					0.11770259565082597
KKMAFHQR	8	Unmodified	_KKMAFHQR_					0	0	0			REV__MAST2|p.R537H|1|0.24|ENSG00000086015|chr1:46023810-46023810|G/A|missense_variant	REV__MAST2|p.R537H|1|0.24|ENSG00000086015|chr1:46023810-46023810|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.2947387695312	2	523.289828	1044.5651	-0.84528	-0.00044233	4.3758	0.0022898	3.5305	0.0018475	523.2914501614295	65.301	1.8444	61.816	61.358	63.202	-3.4854					92	37	5	0	0	0	0.23117	1	4683	4683		119.56	23.523	1	2760200	+		23899	28642	19546	19569	26591	26591					0.04460348622046695
KKMAKHLQAAI	11	Unmodified	_KKMAKHLQAAI_					0	0	0		ENST00000498967.3_2_12:124068190-124068862:-|nuORF	ENST00000498967.3_2_12:124068190-124068862:-|nuORF	ENST00000498967.3_2_12:124068190-124068862:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8684692382812	2	619.873725	1237.7329	-3.8587	-0.0023919	-3.029	-0.0018776	-6.8877	-0.0042695	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.71191	1	15586	15586		25.574	0.12388	1	492670			23900	12835	19547	19570	26592	26592					0.12353991096028949
KKMAPTVLVHS	11	Unmodified	_KKMAPTVLVHS_					0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF;BCOR|p.H776Qfs*50|1|0.19|ENSG00000183337|chrX:40073018-40073019|-/GTCGAGACTGGCAACCCTAGGTTCTCTT|frameshift_variant	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	MULTI-MSMS	OvCa9_classI_Rep4_	4	605.8545532226562	2	605.852458	1209.69036	4.1393	0.0025078	0.88595	0.00053675	5.0253	0.0030446	605.852935555119	133.3	2.5623	131.77	131.46	134.02	-1.5257					111	51	4	0	0	0	0.56391	1	12842	12842		47.96	9.2059	1	751530			23901	8067	19548	19571	26593	26593					0.09390595967784066
KKMHVDQIN	9	Unmodified	_KKMHVDQIN_					0	0	0			REV__CAPN11|p.L485M|1|0.08|ENSG00000137225|chr6:44179976-44179976|T/A|missense_variant	REV__CAPN11|p.L485M|1|0.08|ENSG00000137225|chr6:44179976-44179976|T/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	556.794921875	2	556.797683	1111.58081	0.93665	0.00052153	-4.4247	-0.0024637	-3.4881	-0.0019422	556.7950444095158	115.23	1.0985	113.84	113.51	114.61	-1.3977					53	21	3	0	0	0	0.44568	1	10720	10720		47.657	3.2801	1	224230	+		23902	15736	19549	19572	26594	26594					0.02948590348455582
KKMKIHTRKFR	11	Unmodified	_KKMKIHTRKFR_					0	0	0			REV__ENST00000461916.5_1_2:95753104-95767538:-|nuORF	REV__ENST00000461916.5_1_2:95753104-95767538:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.2791748046875	3	491.638007	1471.89219	-0.11912	-5.8564E-05	-3.3903	-0.0016668	-3.5094	-0.0017254	491.6362709263317	104.54	0.52493	102.42	102.17	102.69	-2.1192					14	9	2	0	0	0	0.026461	1	9485	9485		8.7993	0	1	21495	+		23903	19884	19550	19573	26595	26595					0.17512124443942412
KKMKNQPRK	9	Unmodified	_KKMKNQPRK_					0	0	0			REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.78173828125	2	579.350417	1156.68628	-0.81286	-0.00047093	-3.8032	-0.0022034	-4.616	-0.0026743	579.3481695653101	55.213	0.29375	55.213	55.064	55.358	0					14	6	3	0	0	0	0.027462	1	4523	4523		23.042	12.177	1	364040	+		23904	19243	19551	19574	26596	26596					0.11420551264700407
KKMLEILFEL	10	Unmodified	_KKMLEILFEL_					0	0	0		ENSG00000117148|ENST00000375406|ACTL8	ENSG00000117148|ENST00000375406|ACTL8	ENSG00000117148|ENST00000375406|ACTL8	MULTI-MSMS	OvCa9_classI_Rep4_	4	421.9172668457031	3	421.917554	1262.73083	-0.4925	-0.00020779	-1.1911	-0.00050254	-1.6836	-0.00071033	421.9169855348621	20.547	1.6698	19.208	18.803	20.473	-1.3386					99	33	4	0	0	0	0.6898	1	62	62		31.634	4.587	1	609660			23905	3238	19552	19575	26597	26597					0.10997517567557225
KKMRAQRA	8	Unmodified	_KKMRAQRA_					0	0	0			REV__HCAR1|p.A327Sfs*11|1|0.06|ENSG00000196917|chr12:122729361-122729362|-/ACAGGGGAGGCCGGGCACGGTGGCT|frameshift_variant	REV__HCAR1|p.A327Sfs*11|1|0.06|ENSG00000196917|chr12:122729361-122729362|-/ACAGGGGAGGCCGGGCACGGTGGCT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.7934875488281	2	494.795278	987.576002	-0.31308	-0.00015491	-4.3566	-0.0021556	-4.6697	-0.0023106	494.79309496580765	52.328	1.1525	49.12	48.842	49.995	-3.208					65	22	4	0	0	0	0.61758	1	3130	3130		60.294	5.5176	1	834550	+		23906	22874	19553	19576	26598	26598					0.08171750996336868
KKMRSISL	8	Unmodified	_KKMRSISL_					0	0	0		tr|A0A553SK61|A0A553SK61_NIACIendopeptidaseLaOS=NialliacirculansOX=1397GN=lonBPE=3SV=1	tr|A0A553SK61|A0A553SK61_NIACIendopeptidaseLaOS=NialliacirculansOX=1397GN=lonBPE=3SV=1	tr|A0A553SK61|A0A553SK61_NIACIendopeptidaseLaOS=NialliacirculansOX=1397GN=lonBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.26776123046875	2	481.794412	961.574271	0.59536	0.00028684	-3.6445	-0.0017559	-3.0491	-0.0014691	481.79249016031815	72.255	0.52936	72.255	72.045	72.574	0					21	12	2	0	0	0	0.028476	1	7051	7051		15.642	0	1	574820			23907	33582	19554	19577	26599	26599					0.09194697187729162
KKNALPDIF	9	Unmodified	_KKNALPDIF_					0	0	0			REV__ENSG00000105656|ENST00000262809|ELL	REV__ENSG00000105656|ENST00000262809|ELL	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3043212890625	2	523.305667	1044.59678	-1.2665	-0.00066275	-2.9732	-0.0015559	-4.2396	-0.0022186	523.3039817928272	135.89	3.3837	134.79	133.42	136.8	-1.1076					145	68	3	0	0	0	0.56889	1	11063	11063		35.618	8.9254	1	55052	+		23908	17743	19555	19578	26600	26600					0.07626619856978323
KKNALPDIF	9	Unmodified	_KKNALPDIF_					0	0	0			REV__ENSG00000105656|ENST00000262809|ELL	REV__ENSG00000105656|ENST00000262809|ELL	MULTI-MSMS	OvCa9_classI_Rep3	3	523.303466796875	2	523.305667	1044.59678	-2.1227	-0.0011108	-1.8084	-0.00094634	-3.9311	-0.0020572	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.67509	1	11607	11607		23.042	1.0826	1	183010	+		23909	17743	19555	19578	26601	26601					0.07626619856978323
KKNEKSKLD	9	Unmodified	_KKNEKSKLD_					0	0	0			REV__tr|A0A7D7AAS9|A0A7D7AAS9_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12615PE=4SV=1	REV__tr|A0A7D7AAS9|A0A7D7AAS9_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12615PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.3174438476562	2	545.316763	1088.61897	-0.51373	-0.00028014	0.45215	0.00024656	-0.061581	-3.3581E-05	545.3169196404446	142.63	4.7541	141.19	139.73	144.49	-1.4427					172	91	2	0	0	0	0.69123	1	13945	13945		20.947	0	1	155190	+		23910	32670	19556	19579	26602	26602					0.07820799534761136
KKNFKEISI	9	Unmodified	_KKNFKEISI_					0	0	0		tr|A0A7D6VR93|A0A7D6VR93_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_05830PE=4SV=1	tr|A0A7D6VR93|A0A7D6VR93_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_05830PE=4SV=1	tr|A0A7D6VR93|A0A7D6VR93_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_05830PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8302001953125	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.61208	1	14168	14168		30.504	0.18592	1	245610			23911	34905	19557	19580	26603	26603					0.10094577919812764
KKNFKEISI	9	Unmodified	_KKNFKEISI_					0	0	0		tr|A0A7D6VR93|A0A7D6VR93_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_05830PE=4SV=1	tr|A0A7D6VR93|A0A7D6VR93_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_05830PE=4SV=1	tr|A0A7D6VR93|A0A7D6VR93_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_05830PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	553.830078125	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.55588	1	11753	11753		37.159	8.0096	1	308210			23912	34905	19557	19580	26604	26604					0.10094577919812764
KKNLELQR	8	Unmodified	_KKNLELQR_					0	0	0			REV__tr|A0A7D7AEN9|A0A7D7AEN9_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03190PE=4SV=1	REV__tr|A0A7D7AEN9|A0A7D7AEN9_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03190PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	514.8142700195312	2	514.81419	1027.61383	2.5746	0.0013254	-2.6896	-0.0013847	-0.11509	-5.9251E-05	514.8126670332618	27.295	1.0989	24.585	24.394	25.493	-2.7097					55	24	4	0	0	0	0.73938	1	442	442		31.955	0	1	264850	+		23913	32706	19558	19581	26605	26605					0.1011254046279646
KKNNIKLYV	9	Unmodified	_KKNNIKLYV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000530115.1_1_11:27910903-27911533:-|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OvCa99_classI_Rep5	1	560.3470458984375	2	560.347866	1118.68118	0.35406	0.0001984	-0.57614	-0.00032284	-0.22208	-0.00012444	560.3474578670731	47.329	1.1297	47.329	47.03	48.16	0					66	25	4	0	0	0	0.14739	2	3422	3391;3422		85.359	16.573	1	2276200			23914	1643;1946	19559	19582	26606;26607	26607					0.12658570673738723
KKNPLKNKL	9	Unmodified	_KKNPLKNKL_					0	0	0			REV__tr|A0A553SIL2|A0A553SIL2_NIACIGlycosyltransferasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_15070PE=4SV=1	REV__tr|A0A553SIL2|A0A553SIL2_NIACIGlycosyltransferasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_15070PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	541.8570556640625	2	541.855858	1081.69716	-0.44462	-0.00024092	-0.10143	-5.4961E-05	-0.54605	-0.00029588	541.8557696791977	48.366	2.1335	48.366	47.897	50.031	0					143	48	5	0	0	0	0.055688	2	3538	3538;3570		115.46	3.0481	1	12685000	+		23915	29902	19560	19583	26608;26609	26608					0.15958276910646418
KKNPPVKE	8	Unmodified	_KKNPPVKE_					0	0	0		ENST00000454079.5_1_3:50099419-50099536:+|nuORF	ENST00000454079.5_1_3:50099419-50099536:+|nuORF	ENST00000454079.5_1_3:50099419-50099536:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	471.2560729980469	2	470.284734	938.554916	-1.3067	-0.00061453	1.4204	0.00066801	0.11371	5.3475E-05	470.2851369119697	51.686	1.1408	48.873	48.303	49.444	-2.8129					29	22	2	0	0	0	0.028476	1	3358	3358		27.882	0	1	54323			23916	12082	19561	19584	26610	26610					0.08318064168474848
KKNQHTKIH	9	Unmodified	_KKNQHTKIH_					0	0	0			REV__nc|ENSG00000185591|P08047-3|SP1;REV__nc|ENSG00000172845|Q02447-4|SP3	REV__nc|ENSG00000185591|P08047-3|SP1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3298950195312	2	567.330539	1132.64652	-2.3399	-0.0013275	0.99796	0.00056617	-1.3419	-0.00076131	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.59983	1	14524	14524		31.955	4.9075	1	241060	+		23917	22514;21730	19562	19585	26611	26611					0.08550747585650242
KKNQHTKIH	9	Unmodified	_KKNQHTKIH_					0	0	0			REV__nc|ENSG00000185591|P08047-3|SP1;REV__nc|ENSG00000172845|Q02447-4|SP3	REV__nc|ENSG00000185591|P08047-3|SP1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3297119140625	2	567.330539	1132.64652	-3.474	-0.0019709	2.1482	0.0012187	-1.3258	-0.00075219	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.5811	1	12211	12211		34.173	11.13	1	458690	+		23918	22514;21730	19562	19585	26612	26612					0.08550747585650242
KKNRKEAKD	9	Unmodified	_KKNRKEAKD_					0	0	0		tr|A0A553SF65|A0A553SF65_NIACIEffluxRNDtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08280PE=4SV=1	tr|A0A553SF65|A0A553SF65_NIACIEffluxRNDtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08280PE=4SV=1	tr|A0A553SF65|A0A553SF65_NIACIEffluxRNDtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08280PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.757568359375	2	558.827829	1115.64111	-0.16537	-9.2416E-05	4.0424	0.002259	3.8771	0.0021666	558.8299009783144	40.149	0.59536	40.149	39.883	40.479	0					18	12	2	0	0	0	0.027462	1	2432	2432		29.17	2.1227	1	309800			23919	32996	19563	19586	26613	26613					0.087910240031988
KKNRKEAKD	9	Unmodified	_KKNRKEAKD_					0	0	0		tr|A0A553SF65|A0A553SF65_NIACIEffluxRNDtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08280PE=4SV=1	tr|A0A553SF65|A0A553SF65_NIACIEffluxRNDtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08280PE=4SV=1	tr|A0A553SF65|A0A553SF65_NIACIEffluxRNDtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08280PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	558.827829	1115.64111	-0.20481	-0.00011446	6.044	0.0033776	5.8392	0.0032631	558.8310594671699	43.212	0.7356	40.205	39.906	40.641	-3.0074	0.028086	0.00034717	NaN	29.17	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60676			23920	32996	19563	19586							0.087910240031988
KKNRKMVQVK	10	Unmodified	_KKNRKMVQVK_					0	0	0			REV__ENST00000472616.1_1_7:139796786-139796831:-|nuORF	REV__ENST00000472616.1_1_7:139796786-139796831:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	421.24310302734375	3	420.264058	1257.77035	-2.4202	-0.0010171	-0.048814	-2.0515E-05	-2.4691	-0.0010377	420.26399954270556	49.214	0.93508	46.073	45.675	46.61	-3.1416					36	17	3	0	0	0	0.027214	1	2765	2765		28.081	4.7036	1	31368	+		23921	26314	19564	19587	26614	26614					0.15177082361606153
KKNRKMVQVK	10	Unmodified	_KKNRKMVQVK_					0	0	0			REV__ENST00000472616.1_1_7:139796786-139796831:-|nuORF	REV__ENST00000472616.1_1_7:139796786-139796831:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	420.264058	1257.77035	-0.4996	-0.00020996	-2.2602	-0.00094989	-2.7598	-0.0011599	420.26311431197956	48.572	0.99535	45.811	45.478	46.473	-2.7603	-0.13064	-0.00081645	NaN	20.837	50	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40612	+		23922	26314	19564	19587							0.15177082361606153
KKPFKGKGKT	10	Unmodified	_KKPFKGKGKT_					0	0	0		ENSG00000172969|ENST00000308062|FRG2C	ENSG00000172969|ENST00000308062|FRG2C	ENSG00000172969|ENST00000308062|FRG2C	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.3356323242188	2	559.855858	1117.69716	0.15986	8.9499E-05	2.2275	0.0012471	2.3873	0.0013366	559.8570255337812	106.43	0.30354	104.42	104.31	104.61	-2.0161					8	5	2	0	0	0	0.02663	1	9692	9692		35.152	0	1	21301			23923	7335	19565	19588	26615	26615					0.14302276910666478
KKPGGKLKQ	9	Unmodified	_KKPGGKLKQ_					0	0	0			REV__ENSG00000154767|ENST00000285021|XPC	REV__ENSG00000154767|ENST00000285021|XPC	MULTI-MSMS	OvCa99_classI_Rep5	1	492.3226623535156	2	492.321651	982.62875	-0.63341	-0.00031184	0.31032	0.00015278	-0.32309	-0.00015906	492.3216869517277	55.252	1.6676	55.252	54.632	56.3	0					87	39	3	0	0	0	0.091859	1	4493	4493		99.375	6.1795	1	3479500	+		23924	20397	19566	19589	26616	26616					0.13674032330789032
KKPKKESNAVL	11	Unmodified	_KKPKKESNAVL_					0	0	0		tr|A0A7D6VRC6|A0A7D6VRC6_9CLOTUPF0229proteinHZF06_05025OS=ClostridiumintestinaleOX=36845GN=yhbHPE=3SV=1	tr|A0A7D6VRC6|A0A7D6VRC6_9CLOTUPF0229proteinHZF06_05025OS=ClostridiumintestinaleOX=36845GN=yhbHPE=3SV=1	tr|A0A7D6VRC6|A0A7D6VRC6_9CLOTUPF0229proteinHZF06_05025OS=ClostridiumintestinaleOX=36845GN=yhbHPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	621.38525390625	2	621.382437	1240.75032	1.2522	0.00077808	4.348	0.0027018	5.6002	0.0034799	621.384573041032	148.8	0.68533	148.8	148.52	149.21	0					30	13	3	0	0	0	0.51772	1	17420	17420		51.193	18.442	1	190490			23925	34916	19567	19590	26617	26617					0.13957609902649892
KKPLAEEAL	9	Unmodified	_KKPLAEEAL_					0	0	0			REV__ENSG00000232810|ENST00000449264|TNF	REV__ENSG00000232810|ENST00000449264|TNF	MULTI-MSMS	OvCa9_classI_Rep2	2	499.79522705078125	2	499.797675	997.580796	1.2387	0.00061911	-4.4901	-0.0022442	-3.2514	-0.001625	499.7951854889041	28.84	1.0646	26.13	25.716	26.781	-2.7097					46	22	4	0	0	0	0.6653	1	684	684		24.203	1.1603	1	100180	+		23926	23395	19568	19591	26618	26618					0.08190913620080664
KKPLRDSN	8	Unmodified	_KKPLRDSN_					0	0	0		ENSG00000140382|ENST00000336216|HMG20A	ENSG00000140382|ENST00000336216|HMG20A	ENSG00000140382|ENST00000336216|HMG20A	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.2776184082031	2	479.277441	956.540328	3.5568	0.0017047	-3.8246	-0.001833	-0.26784	-0.00012837	479.27553640678605	133.27	4.5468	131.74	130.46	135.01	-1.5257					141	91	2	0	0	0	0.72896	1	12800	12800		37.159	3.6435	1	46858			23927	4835	19569	19592	26619	26619					0.06031992020314192
KKPLRDSN	8	Unmodified	_KKPLRDSN_					0	0	0		ENSG00000140382|ENST00000336216|HMG20A	ENSG00000140382|ENST00000336216|HMG20A	ENSG00000140382|ENST00000336216|HMG20A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	479.277441	956.540328	0.22143	0.00010613	-0.40778	-0.00019544	-0.18635	-8.9311E-05	479.2771456203373	132.42	5.0182	132.19	130.3	135.32	-0.22696	0.269	0.00038278	NaN	37.159	165	101	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39632			23928	4835	19569	19592							0.06031992020314192
KKPRPPEPE	9	Unmodified	_KKPRPPEPE_					0	0	0		ENSG00000198944|ENST00000378693|SOWAHA	ENSG00000198944|ENST00000378693|SOWAHA	ENSG00000198944|ENST00000378693|SOWAHA	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.3028564453125	2	539.306198	1076.59784	-0.69797	-0.00037642	0.52714	0.00028429	-0.17083	-9.213E-05	539.3063346165004	66.325	0.90999	66.325	65.79	66.7	0					38	22	2	0	0	0	0.027462	1	6187	6187		40.778	7.2626	1	1462300			23929	8912	19570	19593	26620	26620					0.06260834225895451
KKPTSVSSH	9	Unmodified	_KKPTSVSSH_					0	0	0			REV__ENSG00000159788|ENST00000336727|RGS12	REV__ENSG00000159788|ENST00000336727|RGS12	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.759521484375	2	485.769448	969.524344	-0.45963	-0.00022328	0.31345	0.00015226	-0.14619	-7.1013E-05	485.7694937215074	38.896	0.4016	38.896	38.705	39.107	0					12	8	2	0	0	0	0.027461	1	2240	2240		49.442	17.487	1	164950	+		23930	20627	19571	19594	26621	26621					0.03836285783427229
KKPYELAGV	9	Unmodified	_KKPYELAGV_					0	0	0		HIP1|p.H1008P|1|0.04|ENSG00000127946|chr7:75539361-75539361|T/G|missense_variant	HIP1|p.H1008P|1|0.04|ENSG00000127946|chr7:75539361-75539361|T/G|missense_variant	HIP1|p.H1008P|1|0.04|ENSG00000127946|chr7:75539361-75539361|T/G|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	502.7900085449219	2	502.792392	1003.57023	0.021154	1.0636E-05	-4.2952	-0.0021596	-4.274	-0.002149	502.7901599089611	32.675	0.53566	32.675	32.503	33.039	0					31	10	4	0	0	0	0.14998	1	1447	1447		84.916	13.038	1	683460			23931	14482	19572	19595	26622	26622					0.06858930965654508
KKQDLRLVK	9	Unmodified	_KKQDLRLVK_					0	0	0		tr|A0A553ST37|A0A553ST37_NIACIDUF1565domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04340PE=3SV=1	tr|A0A553ST37|A0A553ST37_NIACIDUF1565domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04340PE=3SV=1	tr|A0A553ST37|A0A553ST37_NIACIDUF1565domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04340PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	564.79736328125	2	564.36659	1126.71863	0.13603	7.6773E-05	0.76883	0.0004339	0.90486	0.00051067	564.8689001268457	31.77	0.24672	29.06	28.937	29.184	-2.7097					7	4	2	0	0	0	0.027462	1	997	997		19.997	0.89325	1	9609.5			23932	34451	19573	19596	26623	26623					0.16033661939354715
KKQIYAIKY	9	Unmodified	_KKQIYAIKY_					0	0	0		nc|ENSG00000112742|P33981-2|TTK;chr6:80022472-80026381|411|14.54|0.51|4.83|+|ENST00000509894|TTK,TTK;ENSG00000112742|ENST00000369798|TTK	nc|ENSG00000112742|P33981-2|TTK	nc|ENSG00000112742|P33981-2|TTK	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.813232421875	2	577.850242	1153.68593	1.4443	0.00083461	1.0628	0.00061412	2.5071	0.0014487	577.8506945842781	83.782	0.5062	83.782	83.545	84.051	0					19	9	3	0	0	0	0.027462	1	8764	8764		38.806	12.113	1	640710			23933	520	19574	19597	26624	26624					0.11523454816506273
KKQKEEERKKK	11	Unmodified	_KKQKEEERKKK_					0	0	0		DYNC1I1|p.R27Q|1|0.15|ENSG00000158560|chr7:95804809-95804809|G/A|missense_variant	DYNC1I1|p.R27Q|1|0.15|ENSG00000158560|chr7:95804809-95804809|G/A|missense_variant	DYNC1I1|p.R27Q|1|0.15|ENSG00000158560|chr7:95804809-95804809|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	486.9600524902344	3	486.963213	1457.86781	-4.7825	-0.0023289	-3.9724	-0.0019344	-8.7549	-0.0042633	486.9610953135575	160.39	2.6298	160.16	159.25	161.88	-0.22696					128	53	4	0	0	0	0.72483	2	16386	16277;16386		17.833	4.3252	1	96650			23934	769	19575	19598	26625;26626	26626					0.1571914277144515
KKQKEEERKKK	11	Unmodified	_KKQKEEERKKK_					0	0	0		DYNC1I1|p.R27Q|1|0.15|ENSG00000158560|chr7:95804809-95804809|G/A|missense_variant	DYNC1I1|p.R27Q|1|0.15|ENSG00000158560|chr7:95804809-95804809|G/A|missense_variant	DYNC1I1|p.R27Q|1|0.15|ENSG00000158560|chr7:95804809-95804809|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	486.95782470703125	3	486.963213	1457.86781	-6.9542	-0.0033864	-1.68	-0.00081809	-8.6342	-0.0042045	486.9622029105925	158.45	2.296	157.18	156.33	158.63	-1.267					151	56	3	0	0	0	0.72528	1	13679	13679		11.932	3.1331	1	50747			23935	769	19575	19598	26627	26627					0.1571914277144515
KKQKKKFAKL	10	Unmodified	_KKQKKKFAKL_					0	0	0			REV__ENST00000377028.9_1_13:95091686-95091875:-|nuORF	REV__ENST00000377028.9_1_13:95091686-95091875:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	623.9183349609375	2	623.921532	1245.82851	-5.6275	-0.0035111	-0.80944	-0.00050503	-6.4369	-0.0040161	623.9209249558969	163.4	0.91801	163.18	162.75	163.67	-0.22696					66	30	3	0	0	0	0.94667	1	16645	16645		3.41	0.25078	1	62419	+		23936	25109	19576	19599	26628	26628					0.21543087278541861
KKQMRILMGEA	11	Unmodified	_KKQMRILMGEA_					0	0	0		ENST00000467281.5_1_7:127228552-127229563:+|nuORF	ENST00000467281.5_1_7:127228552-127229563:+|nuORF	ENST00000467281.5_1_7:127228552-127229563:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	435.57672119140625	3	435.577425	1303.71045	-3.9702	-0.0017293	4.2681	0.0018591	0.29792	0.00012977	435.57922182732636	156.17	0.67278	155.94	155.7	156.37	-0.22696					41	19	3	0	0	0	0.72472	1	15883	15883		19.263	1.4295	1	23638			23937	12309	19577	19600	26629	26629					0.07074023636073434
KKQPLDRRET	10	Unmodified	_KKQPLDRRET_					0	0	0		ENSG00000081148|ENST00000193391|IMPG2	ENSG00000081148|ENST00000193391|IMPG2	ENSG00000081148|ENST00000193391|IMPG2	MULTI-SECPEP	OvCa9_classI_Rep2	2	424.2576904296875	3	424.245721	1269.71533	-1.0926	-0.00046353	0.70517	0.00029916	-0.38742	-0.00016436	424.2460342960157	54.196	0.74768	51.382	50.975	51.722	-2.8139					21	14	2	0	0	0	0.027117	1	3726	3726		21.686	0	1	18024			23938	1655	19578	19601	26630	26630					0.09126367094677335
KKQRKGPHRKS	11	Unmodified	_KKQRKGPHRKS_					0	0	0		ENSG00000152785|ENST00000282701|BMP3	ENSG00000152785|ENST00000282701|BMP3	ENSG00000152785|ENST00000282701|BMP3	MULTI-SECPEP	OvCa9_classI_Rep3	3	450.5990295410156	3	450.612738	1348.81638	-0.36522	-0.00016457	-3.8429	-0.0017317	-4.2081	-0.0018962	450.610968063922	75.161	0.23814	72.75	72.536	72.774	-2.4106					6	4	2	0	0	0	0.026033	1	3769	3769		22.562	0	1	20725			23939	5645	19579	19602	26631	26631					0.15592863588062755
KKQSASLAR	9	Unmodified	_KKQSASLAR_					0	0	0			REV__nc|ENSG00000166073|Q14439-2|GPR176	REV__nc|ENSG00000166073|Q14439-2|GPR176	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.80340576171875	2	494.79854	987.582528	-0.14813	-7.3296E-05	2.349	0.0011623	2.2009	0.001089	494.80009719883776	51.863	1.0061	48.689	48.072	49.078	-3.1734					62	19	6	0	0	0	0.027462	1	3091	3091		19.104	0	1	604050	+		23940	21155	19580	19603	26632	26632					0.08823967428713786
KKQVGTGL	8	Unmodified	_KKQVGTGL_					0	0	0		nc|ENSG00000101282|Q2I0M5-2|RSPO4;ENSG00000101282|ENST00000217260|RSPO4	nc|ENSG00000101282|Q2I0M5-2|RSPO4	nc|ENSG00000101282|Q2I0M5-2|RSPO4	MULTI-MSMS	OvCa99_classI_Rep5	1	415.7583923339844	2	415.758352	829.502152	-0.16007	-6.6549E-05	0.44268	0.00018405	0.28262	0.0001175	415.7583912988434	28.265	0.54718	28.265	28.041	28.588	0					20	10	3	0	0	0	0.53531	1	913	913		73.975	2.679	1	182610			23941	2159	19581	19604	26633	26633					0.08058106105670504
KKRAIVVC	8	Unmodified	_KKRAIVVC_					0	0	0		tr|A0A553STZ8|A0A553STZ8_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06035PE=4SV=1	tr|A0A553STZ8|A0A553STZ8_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06035PE=4SV=1	tr|A0A553STZ8|A0A553STZ8_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06035PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	458.7875671386719	2	458.791672	915.568792	-3.9055	-0.0017918	-4.4688	-0.0020503	-8.3744	-0.0038421	458.7895332206503	147.83	2.1995	146.88	146.25	148.45	-0.9512					131	43	4	0	0	0	0.74361	3	12487	12445;12487;12505		29.842	0	1	949810			23942	34557	19582	19605	26634;26635;26636	26635					0.10763018395903146
KKRESPII	8	Unmodified	_KKRESPII_					0	0	0			REV__ENST00000514462.1_1_5:43505848-43515051:-|nuORF	REV__ENST00000514462.1_1_5:43505848-43515051:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	485.80615234375	2	485.805834	969.597115	-0.75076	-0.00036472	0.6122	0.00029741	-0.13856	-6.7315E-05	485.80603826412454	56.324	1.6845	53.52	52.978	54.662	-2.804					75	33	3	0	0	0	0.72896	1	3971	3971		37.159	0	1	355580	+		23943	21685	19583	19606	26637	26637					0.11110039576851705
KKRGHFRVKNR	11	Unmodified	_KKRGHFRVKNR_					0	0	0			REV__ENSG00000171189|ENST00000327783|GRIK1	REV__ENSG00000171189|ENST00000327783|GRIK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.96148681640625	3	475.960249	1424.85892	-1.6329	-0.00077717	2.9074	0.0013838	1.2745	0.00060661	475.9615468309244	107.77	2.2527	105.89	105.54	107.79	-1.8785					122	44	4	0	0	0	0.72497	1	9867	9867		15.921	1.6774	1	542170	+		23944	21601	19584	19607	26638	26638					0.1634825871628891
KKRGLAGHLA	10	Unmodified	_KKRGLAGHLA_					0	0	0			REV__nc|ENSG00000182183|Q6UWV7-2|SHISAL2A	REV__nc|ENSG00000182183|Q6UWV7-2|SHISAL2A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.8203125	2	525.830175	1049.6458	-0.66081	-0.00034747	1.858	0.00097697	1.1972	0.0006295	526.3341793700422	64.036	0.19544	60.561	60.442	60.637	-3.475					5	3	2	0	0	0	0.026915	1	4534	4534		44.117	3.5442	1	15301	+		23945	25832	19585	19608	26639	26639					0.1229595293661987
KKRHLIIL	8	Unmodified	_KKRHLIIL_					0	0	0			REV__ENST00000296422.11_1_4:103911031-103940882:-|nuORF	REV__ENST00000296422.11_1_4:103911031-103940882:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.8372802734375	2	510.855661	1019.69677	-0.62558	-0.00031958	-3.4365	-0.0017556	-4.0621	-0.0020752	510.85356857066637	75.164	0.61809	73.193	73.102	73.72	-1.9711					14	11	2	0	0	0	0.028476	1	6189	6189		26.796	6.3143	1	18833	+		23946	24201	19586	19609	26640	26640					0.18770901981474708
KKRKKRRK	8	Unmodified	_KKRKKRRK_					0	0	0		HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|134|2|anti-sense	HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|134|2|anti-sense	HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|134|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.3256225585938	2	564.401633	1126.78871	1.0165	0.00057369	-2.9718	-0.0016773	-1.9554	-0.0011036	564.4004171995886	102.9	0.20975	100.7	100.57	100.78	-2.1994					5	3	2	0	0	0	0.028476	1	9266	9266		1.4648	0	1	14924			23947	14492	19587	19610	26641	26641					0.2303900511849406
KKRKKVLL	8	Unmodified	_KKRKKVLL_					0	0	0		nc|ENSG00000001631|O00522-3|KRIT1;ENSG00000001631|ENST00000394505|KRIT1;ENST00000470309.5_1_7:91870289-91871464:-|nuORF	nc|ENSG00000001631|O00522-3|KRIT1	nc|ENSG00000001631|O00522-3|KRIT1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.8121337890625	2	506.871311	1011.72807	0.44723	0.00022669	2.1896	0.0011099	2.6368	0.0013365	506.8723946718265	89.7	0.24844	87.125	87	87.248	-2.575					7	4	2	0	0	0	0.028476	1	7716	7716		28.254	8.8943	1	14012			23948	808	19588	19611	26642	26642					0.22267475015553373
KKRKKVLL	8	Unmodified	_KKRKKVLL_					0	0	0		nc|ENSG00000001631|O00522-3|KRIT1;ENSG00000001631|ENST00000394505|KRIT1;ENST00000470309.5_1_7:91870289-91871464:-|nuORF	nc|ENSG00000001631|O00522-3|KRIT1	nc|ENSG00000001631|O00522-3|KRIT1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	506.871311	1011.72807	-0.95732	-0.00048524	-4.7021	-0.0023834	-5.6595	-0.0028686	506.8689716180611	89.248	0.34256	87.117	86.944	87.287	-2.1309	-0.0039263	-0.0034085	NaN	28.254	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11831			23949	808	19588	19611							0.22267475015553373
KKRNGKQIGWR	11	Unmodified	_KKRNGKQIGWR_					0	0	0			REV__ENST00000533030.1_1_11:47376780-47400013:-|nuORF	REV__ENST00000533030.1_1_11:47376780-47400013:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	457.60919189453125	3	457.609105	1369.80549	-6.2056	-0.0028397	4.0929	0.0018729	-2.1127	-0.00096677	457.6108688134911	157.03	3.4081	155.86	154.91	158.32	-1.1707					147	80	2	0	0	0	0.72545	1	13639	13639		9.6461	0.43434	1	68588	+		23950	15585	19589	19612	26643	26643					0.1353746121376389
KKRNGKQIGWR	11	Unmodified	_KKRNGKQIGWR_					0	0	0			REV__ENST00000533030.1_1_11:47376780-47400013:-|nuORF	REV__ENST00000533030.1_1_11:47376780-47400013:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	457.6089172363281	3	457.609105	1369.80549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	154.96	1	153.47	152.97	153.97	-1.4911								0	0	0	0.19474	1	15343	15343		20.03	6.5225	1		+		23951	15585	19589	19612	26644	26644					0.1353746121376389
KKRNIPGLT	9	Unmodified	_KKRNIPGLT_					0	0	0			REV__L1M2_dup9102|chr21:15781465-15783675:+|1.9878716944661228|0.1805436335784144|3.46|428.0|56|3|sense	REV__L1M2_dup9102|chr21:15781465-15783675:+|1.9878716944661228|0.1805436335784144|3.46|428.0|56|3|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	513.8258056640625	2	513.824558	1025.63456	-0.30876	-0.00015865	-0.42303	-0.00021736	-0.73179	-0.00037601	513.8242497771212	77.235	1.8594	75.445	74.946	76.805	-1.7894					108	35	5	0	0	0	0.67509	1	6408	6408		23.042	1.3402	1	840920	+		23952	28357	19590	19613	26645	26645					0.12277130842448969
KKRPLDVT	8	Unmodified	_KKRPLDVT_					0	0	0		nc|ENSG00000068024|P56524-2|HDAC4;nc|ENSG00000068024|P56524|HDAC4;ENSG00000068024|ENST00000543185|HDAC4;ENST00000535493.5_1_2:240016681-240219867:-|nuORF;ENST00000493582.5_1_2:240016681-240274403:-|nuORF;ENST00000463007.5_1_2:240011659-240219867:-|nuORF	nc|ENSG00000068024|P56524-2|HDAC4	nc|ENSG00000068024|P56524-2|HDAC4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.2828674316406	2	478.798009	955.581465	-0.38265	-0.00018321	-0.8758	-0.00041933	-1.2585	-0.00060254	478.7972437551989	82.509	0.83022	79.826	79.489	80.319	-2.6829					28	16	3	0	0	0	0.028476	1	6871	6871		63.306	17.334	1	79812			23953	1384	19591	19614	26646	26646					0.10189753059808027
KKRQEVLEKQI	11	Unmodified	_KKRQEVLEKQI_					0	0	0		ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	ENSG00000091009|ENST00000265271|RBM27	MULTI-MSMS	OvCa9_classI_Rep3	3	466.9516296386719	3	466.952426	1397.83545	1.5916	0.00074322	-2.0144	-0.00094062	-0.42273	-0.00019739	466.9514863874782	62.714	2.1935	59.681	59.362	61.555	-3.0339					129	43	5	0	0	0	0.72516	1	2392	2392		13.508	1.0751	1	504980			23954	1857	19592	19615	26647	26647					0.15244355368463403
KKRRKDYKRKS	11	Unmodified	_KKRRKDYKRKS_					0	0	0			REV__nc|ENSG00000133863|Q9BXT5|TEX15	REV__nc|ENSG00000133863|Q9BXT5|TEX15	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3096008300781	3	498.310947	1491.91101	-5.113	-0.0025478	2.9879	0.0014889	-2.125	-0.0010589	498.3123780141879	160.35	1.8473	160.12	159.68	161.53	-0.22697					120	37	4	0	0	0	0.72573	3	16367	16367;16379;16443		6.001	2.382	1	150420	+		23955	19162	19593	19616	26648;26649;26650	26648					0.18473377339387298
KKRRKRTV	8	Unmodified	_KKRRKRTV_					0	0	0			REV__tr|A0A553SK37|A0A553SK37_NIACILargeribosomalsubunitproteinbL20OS=NialliacirculansOX=1397GN=rplTPE=3SV=1	REV__tr|A0A553SK37|A0A553SK37_NIACILargeribosomalsubunitproteinbL20OS=NialliacirculansOX=1397GN=rplTPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2839965820312	2	536.364716	1070.71488	-0.63143	-0.00033868	2.4387	0.001308	1.8072	0.00096934	536.3658082033546	50.603	0.57531	50.603	50.288	50.863	0					31	12	3	0	0	0	0.028476	1	3838	3838		29.15	0	1	1134900	+		23956	30072	19594	19617	26651	26651					0.1823503695616182
KKRRNKLVYYF	11	Unmodified	_KKRRNKLVYYF_					0	0	0			REV__tr|A0A553SIT1|A0A553SIT1_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_15455PE=4SV=1	REV__tr|A0A553SIT1|A0A553SIT1_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_15455PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.2738952636719	3	505.636661	1513.88815	-1.517	-0.00076707	-2.6897	-0.00136	-4.2068	-0.0021271	505.9696305028236	53.565	0.64671	50.751	50.578	51.225	-2.8139					20	12	2	0	0	0	0.026488	1	3684	3684		6.3209	2.7018	1	24018	+		23957	29924	19595	19618	26652	26652					0.15176358221924602
KKRRNWHRHDY	11	Unmodified	_KKRRNWHRHDY_					0	0	0		ENSG00000006459|ENST00000397560|KDM7A;nc|ENSG00000006459|Q6ZMT4-2|KDM7A	ENSG00000006459|ENST00000397560|KDM7A	ENSG00000006459|ENST00000397560|KDM7A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.7797241210938	3	532.618663	1594.83416	-1.3554	-0.00072193	2.7429	0.0014609	1.3875	0.00073899	532.6201449557138	48.378	0.41222	45.27	45.039	45.451	-3.1077					9	7	2	0	0	0	0.026435	1	2679	2679		9.6461	0	1	17048			23958	878	19596	19619	26653	26653					0.06053578842920615
KKRRRWRRRV	10	Unmodified	_KKRRRWRRRV_					0	0	0		ENST00000556594.1_1_14:91518767-91526894:-|nuORF	ENST00000556594.1_1_14:91518767-91526894:-|nuORF	ENST00000556594.1_1_14:91518767-91526894:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.30517578125	3	499.658904	1495.95488	-1.3644	-0.00068173	1.4879	0.00074345	0.12354	6.1728E-05	499.6596427251135	43.307	0.93285	40.299	39.958	40.891	-3.0074					24	17	2	0	0	0	0.027492	1	2092	2092		11.636	0	1	32667			23959	13667	19597	19620	26654	26654					0.2267445134702939
KKRRTRSA	8	Unmodified	_KKRRTRSA_					0	0	0		nc|ENSG00000087494|P12272-2|PTHLH;ENSG00000087494|ENST00000545234|PTHLH;nc|ENSG00000087494|P12272-3|PTHLH	nc|ENSG00000087494|P12272-2|PTHLH	nc|ENSG00000087494|P12272-2|PTHLH	MULTI-SECPEP	OvCa9_classI_Rep2	2	502.8082580566406	2	501.817599	1001.62064	2.5095	0.0012593	-0.55677	-0.0002794	1.9528	0.00097994	501.81699070114996	26.252	0.46165	23.542	23.418	23.88	-2.7097					11	9	2	0	0	0	0.028476	1	344	344		17.365	0	1	20143			23960	1776	19598	19621	26655	26655					0.11989898134038413
KKRSWFIY	8	Unmodified	_KKRSWFIY_					0	0	0			REV__tr|A0A7D6VQY3|A0A7D6VQY3_9CLOTDUF916domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00245PE=4SV=1	REV__tr|A0A7D6VQY3|A0A7D6VQY3_9CLOTDUF916domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00245PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	564.3231811523438	2	564.321651	1126.62875	3.1763	0.0017924	-0.16431	-9.2725E-05	3.012	0.0016997	564.3213788592631	26.344	0.90757	23.635	23.418	24.326	-2.7097					50	25	3	0	0	0	0.74394	1	402	402		13.775	2.9098	1	124260	+		23961	31370	19599	19622	26656	26656					0.07050032330812428
KKRTDEVAV	9	Unmodified	_KKRTDEVAV_					0	0	0		ENST00000338272.8_1_1:109637645-109637765:+|nuORF	ENST00000338272.8_1_1:109637645-109637765:+|nuORF	ENST00000338272.8_1_1:109637645-109637765:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	523.306640625	2	523.303655	1044.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.77	1	137.25	136.75	137.75	-1.5284								0	0	0	0.22147	1	13515	13515		23.042	5.5745	1				23962	10534	19600	19623	26657	26657					0.07224530363282611
KKRVPKKPE	9	Unmodified	_KKRVPKKPE_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;ENST00000524476.5_1_15:28882105-28886289:+|nuORF;ENST00000529353.1_1_15:28878360-28886587:+|nuORF;ENST00000430598.5_1_15:20613931-20667676:-|nuORF;ENST00000428453.5_1_15:20588586-20667676:-|nuORF;nc|ENSG00000290376|Q9BVR0|HERC2P3;ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENSG00000128731|ENST00000261609|HERC2;ENST00000428453.5_1_15:20588586-20667676:-|nuORF;ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENSG00000128731|ENST00000261609|HERC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.3681030273438	2	555.361308	1108.70806	0.70507	0.00039157	-3.8985	-0.0021651	-3.1935	-0.0017735	555.3588450412137	63.332	0.39441	63.332	63.14	63.534	0					16	9	2	0	0	0	0.027462	1	5665	5665		14.137	3.2716	1	691050			23963	3901;11773;13276	19601	19624	26658	26658					0.15805679284949292
KKRVPVSL	8	Unmodified	_KKRVPVSL_					0	0	0			REV__ATRX|p.Y1667Sfs*13|1|0.04|ENSG00000085224|chrX:77633341-77633341|T/-|frameshift_variant	REV__ATRX|p.Y1667Sfs*13|1|0.04|ENSG00000085224|chrX:77633341-77633341|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.76385498046875	2	463.810919	925.607286	0.32072	0.00014875	-1.3406	-0.00062177	-1.0198	-0.00047302	463.81010392407217	66.573	0.74588	63.878	63.567	64.313	-2.6958					18	14	2	0	0	0	0.028476	1	5202	5202		24.203	6.8378	1	22688	+		23964	15684	19602	19625	26659	26659					0.14150647302096786
KKRVPVSL	8	Unmodified	_KKRVPVSL_					0	0	0			REV__ATRX|p.Y1667Sfs*13|1|0.04|ENSG00000085224|chrX:77633341-77633341|T/-|frameshift_variant	REV__ATRX|p.Y1667Sfs*13|1|0.04|ENSG00000085224|chrX:77633341-77633341|T/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	463.810919	925.607286	0.89042	0.00041299	-1.0602	-0.00049173	-0.16978	-7.8748E-05	463.8102674320709	66.743	0.71243	63.856	63.628	64.341	-2.8873	-0.12143	-0.0005278	NaN	24.203	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35735	+		23965	15684	19602	19625							0.14150647302096786
KKSASSTV	8	Unmodified	_KKSASSTV_					0	0	0			REV__nc|ENSG00000182463|Q9NRE2-2|TSHZ2	REV__nc|ENSG00000182463|Q9NRE2-2|TSHZ2	MULTI-MSMS	OvCa9_classI_Rep2	2	404.2325134277344	2	404.232168	806.449782	1.4985	0.00060574	0.40137	0.00016225	1.8999	0.00076799	404.2322157005619	134.25	0.93222	134.02	133.46	134.39	-0.22697					47	18	3	0	0	0	0.74394	1	13318	13318		13.775	0.81615	1	139150	+		23966	22295	19603	19626	26660	26660					0.038815229720512434
KKSCKKMLI	9	Unmodified	_KKSCKKMLI_					0	0	0			REV__ENST00000231572.7_1_5:167943936-167944917:+|nuORF	REV__ENST00000231572.7_1_5:167943936-167944917:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.7832641601562	2	539.827398	1077.64024	-0.022754	-1.2283E-05	2.0169	0.0010888	1.9941	0.0010765	539.8284569069137	69.061	0.48915	69.061	68.858	69.347	0					16	11	2	0	0	0	0.027462	1	6580	6580		29.15	16.338	1	243490	+		23967	23792	19604	19627	26661	26661					0.10452770038273229
KKSGFINELI	10	Unmodified	_KKSGFINELI_					0	0	0		ENSG00000146350|ENST00000398212|TBC1D32;nc|ENSG00000146350|Q96NH3-4|TBC1D32	ENSG00000146350|ENST00000398212|TBC1D32	ENSG00000146350|ENST00000398212|TBC1D32	MULTI-MSMS	OvCa9_classI_Rep4_	4	574.8381958007812	2	574.837331	1147.66011	-0.87533	-0.00050317	0.20724	0.00011913	-0.66808	-0.00038404	574.8373813616681	91.362	5.8049	88.819	88.449	94.254	-2.5425					226	116	5	0	0	0	0.45822	1	7908	7908		60.118	7.1816	1	3993100			23968	5284	19605	19628	26662	26662					0.0921856057423156
KKSHRQSH	8	Unmodified	_KKSHRQSH_					0	0	0		nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.27593994140625	2	504.278306	1006.54206	-1.5284	-0.00077072	2.3277	0.0011738	0.79934	0.00040309	504.279329598169	85.634	1.589	83.414	82.498	84.087	-2.2204					41	31	2	0	0	0	0.028476	1	5006	5006		73.975	8.1716	1	23966			23969	825	19606	19629	26663	26663					0.039050458289466405
KKSIEDRP	8	Unmodified	_KKSIEDRP_					0	0	0			REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|249|1|anti-sense	REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|249|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.2652282714844	2	486.777274	971.539994	-0.71291	-0.00034703	0.053129	2.5862E-05	-0.65978	-0.00032117	486.77729091374255	64.353	1.0615	64.353	64.011	65.072	0					73	25	4	0	0	0	0.028476	1	5807	5807		49.442	5.3247	1	25831000	+		23970	28204	19607	19630	26664	26664					0.05308572300475589
KKSIQHKKQSA	11	Unmodified	_KKSIQHKKQSA_					0	0	0			REV__ENST00000484875.5_1_20:46386013-46414798:-|nuORF	REV__ENST00000484875.5_1_20:46386013-46414798:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8815307617188	2	641.883136	1281.75172	-4.0037	-0.0025699	2.6785	0.0017193	-1.3252	-0.00085062	642.3862707583961	149.94	3.9275	149.71	147.52	151.45	-0.22696					225	78	5	0	0	0	0.72502	1	15155	15155		15.333	0.46824	1	222110	+		23971	24820	19608	19631	26665	26665					0.12211243991418996
KKSIQHKKQSA	11	Unmodified	_KKSIQHKKQSA_					0	0	0			REV__ENST00000484875.5_1_20:46386013-46414798:-|nuORF	REV__ENST00000484875.5_1_20:46386013-46414798:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8826293945312	2	641.883136	1281.75172	-4.6434	-0.0029805	3.7859	0.0024301	-0.85746	-0.00055039	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.70761	1	15431	15431		27.047	6.1004	1	543390	+		23972	24820	19608	19631	26666	26666					0.12211243991418996
KKSIQKLKN	9	Unmodified	_KKSIQKLKN_					0	0	0			REV__L1PB1_dup435|chr1:148902763-148905178:-|1.8547645190966555|0.2878265206874703|2.69|429.0|42|2|sense	REV__L1PB1_dup435|chr1:148902763-148905178:-|1.8547645190966555|0.2878265206874703|2.69|429.0|42|2|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.8495483398438	2	543.853316	1085.69208	-2.4975	-0.0013583	-4.0838	-0.002221	-6.5813	-0.0035792	543.8507842433712	126.58	0.99275	125.17	124.97	125.96	-1.4143					36	19	3	0	0	0	0.51865	1	12071	12071		40.778	0.20554	1	38736	+		23973	28588	19609	19632	26667	26667					0.152659730480309
KKSIQKLKN	9	Unmodified	_KKSIQKLKN_					0	0	0			REV__L1PB1_dup435|chr1:148902763-148905178:-|1.8547645190966555|0.2878265206874703|2.69|429.0|42|2|sense	REV__L1PB1_dup435|chr1:148902763-148905178:-|1.8547645190966555|0.2878265206874703|2.69|429.0|42|2|sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	543.853316	1085.69208	0.16849	9.1632E-05	-7.0165	-0.003816	-6.848	-0.0037243	543.849319521941	125.33	0.89157	125.09	124.91	125.8	-0.23589	-0.080009	-0.00042096	NaN	40.778	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43118	+		23974	28588	19609	19632							0.152659730480309
KKSIQKLKN	9	Unmodified	_KKSIQKLKN_					0	0	0			REV__L1PB1_dup435|chr1:148902763-148905178:-|1.8547645190966555|0.2878265206874703|2.69|429.0|42|2|sense	REV__L1PB1_dup435|chr1:148902763-148905178:-|1.8547645190966555|0.2878265206874703|2.69|429.0|42|2|sense	MULTI-MATCH	OvCa9_classI_Rep3	3		2	543.853316	1085.69208	1.4038	0.00076345	-8.2185	-0.0044697	-6.8147	-0.0037062	543.8485918203484	126.33	0.94524	125.26	124.97	125.91	-1.0715	0.08378	-0.0017284	NaN	40.778	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42952	+		23975	28588	19609	19632							0.152659730480309
KKSIQKLKN	9	Unmodified	_KKSIQKLKN_					0	0	0			REV__L1PB1_dup435|chr1:148902763-148905178:-|1.8547645190966555|0.2878265206874703|2.69|429.0|42|2|sense	REV__L1PB1_dup435|chr1:148902763-148905178:-|1.8547645190966555|0.2878265206874703|2.69|429.0|42|2|sense	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	543.853316	1085.69208	-2.4975	-0.0013583	-4.0838	-0.002221	-6.5813	-0.0035792	543.8507842433712	126.58	0.99275	125.17	124.97	125.96	-1.4143	-0.0037717	0.002769	NaN	40.778	36	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38736	+		23976	28588	19609	19632							0.152659730480309
KKSIRKKIVF	10	Unmodified	_KKSIRKKIVF_					0	0	0		tr|A0A553SPJ4|A0A553SPJ4_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26530PE=4SV=1	tr|A0A553SPJ4|A0A553SPJ4_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26530PE=4SV=1	tr|A0A553SPJ4|A0A553SPJ4_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26530PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	623.9160766601562	2	623.921532	1245.82851	-5.6275	-0.0035111	-0.80944	-0.00050503	-6.4369	-0.0040161	623.9209249558969	163.4	0.91801	163.18	162.75	163.67	-0.22696					66	30	3	0	0	0	0.90316	1	16672	16672		5.9211	2.5111	1	62419			23977	34052	19610	19633	26668	26668					0.21543087278519124
KKSLGILS	8	Unmodified	_KKSLGILS_					0	0	0		tr|A0A7D6VSQ5|A0A7D6VSQ5_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05950PE=4SV=1	tr|A0A7D6VSQ5|A0A7D6VSQ5_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05950PE=4SV=1	tr|A0A7D6VSQ5|A0A7D6VSQ5_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05950PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	423.27490234375	2	423.276378	844.538203	-1.0746	-0.00045487	-1.9263	-0.00081535	-3.0009	-0.0012702	423.27545611036373	140.26	1.6211	140.03	139.45	141.07	-0.22696					84	32	4	0	0	0	0.74394	1	13990	13990		13.775	0	1	166850			23978	35049	19611	19634	26669	26669					0.10971563282521402
KKSLQNAQK	9	Unmodified	_KKSLQNAQK_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MULTI-MSMS	OvCa99_classI_Rep5	1	522.8115844726562	2	522.811648	1043.60874	-1.0446	-0.00054611	0.83263	0.00043531	-0.21193	-0.0001108	522.8119901844366	25.414	1.1018	25.414	24.99	26.092	0					52	21	4	0	0	0	0.62352	1	580	580		29.15	1.2673	1	970860			23979	1474	19612	19635	26670	26670					0.08868236600164892
KKSSGGSPKKI	11	Unmodified	_KKSSGGSPKKI_					0	0	0			REV__nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	REV__nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	MULTI-MSMS	OvCa9_classI_Rep2	2	558.8411254882812	2	558.840405	1115.66626	1.1066	0.00061842	-1.3696	-0.00076538	-0.26298	-0.00014697	558.8394771772328	30.588	0.88633	27.878	27.706	28.592	-2.7097					39	17	3	0	0	0	0.34051	1	857	857		65.465	3.7741	1	114560	+		23980	18817	19613	19636	26671	26671					0.11305078805776247
KKSSNLKVN	9	Unmodified	_KKSSNLKVN_					0	0	0		tr|A0A7D6ZG62|A0A7D6ZG62_9CLOTYbbR-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20995PE=4SV=1	tr|A0A7D6ZG62|A0A7D6ZG62_9CLOTYbbR-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20995PE=4SV=1	tr|A0A7D6ZG62|A0A7D6ZG62_9CLOTYbbR-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20995PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	509.3068542480469	2	509.306198	1016.59784	-2.5875	-0.0013179	2.3215	0.0011824	-0.26601	-0.00013548	509.30726434734663	146.58	1.0992	146.36	145.97	147.07	-0.22696					49	21	3	0	0	0	0.70177	1	14784	14784		17.365	3.5896	1	49197			23981	35536	19614	19637	26672	26672					0.09020834225907493
KKSSRRRK	8	Unmodified	_KKSSRRRK_					0	0	0		nc|ENSG00000005102|P50221-2|MEOX1;ENSG00000005102|ENST00000318579|MEOX1;nc|ENSG00000005102|P50221-3|MEOX1;chr17:43661393-43661871|327|23.51|0.6|5.28|-|ENST00000393661|MEOX1,MEOX1	nc|ENSG00000005102|P50221-2|MEOX1	nc|ENSG00000005102|P50221-2|MEOX1	MULTI-SECPEP	OvCa9_classI_Rep3	3	524.2969360351562	2	523.338698	1044.66284	-1.042	-0.00054534	-3.4829	-0.0018228	-4.525	-0.0023681	523.3366225185185	117.07	1.1391	116.04	115.8	116.93	-1.0324					35	22	2	0	0	0	0.028476	1	8842	8842		44.117	8.4985	1	42850			23982	843	19615	19638	26673	26673					0.14229873542399218
KKSVEPVKTVQ	11	Unmodified	_KKSVEPVKTVQ_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.2301330566406	3	414.918722	1241.73434	0.24639	0.00010223	-1.214	-0.00050373	-0.96766	-0.0004015	414.9189594524437	38.487	0.40417	38.487	38.301	38.705	0					11	8	2	0	0	0	0.02595	1	2189	2189		33.039	6.2897	1	61599	+		23983	28942;32737	19616	19639	26674	26674					0.12313903665767612
KKSVKPVEI	9	Unmodified	_KKSVKPVEI_					0	0	0		tr|A0A7D6ZXF3|A0A7D6ZXF3_9CLOTRNA-bindingproteinS1OS=ClostridiumintestinaleOX=36845GN=HZF06_21705PE=4SV=1	tr|A0A7D6ZXF3|A0A7D6ZXF3_9CLOTRNA-bindingproteinS1OS=ClostridiumintestinaleOX=36845GN=HZF06_21705PE=4SV=1	tr|A0A7D6ZXF3|A0A7D6ZXF3_9CLOTRNA-bindingproteinS1OS=ClostridiumintestinaleOX=36845GN=HZF06_21705PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.62353515625	2	514.329142	1026.64373	-0.77775	-0.00040002	-2.7019	-0.0013897	-3.4797	-0.0017897	514.328440389869	64.375	0.5807	64.375	64.051	64.631	0					25	13	3	0	0	0	0.027447	1	5827	5827		47.657	19.775	1	700630			23984	35878	19617	19640	26675	26675					0.13147479408144136
KKSWLLLVLWE	11	Unmodified	_KKSWLLLVLWE_					0	0	0			REV__ENST00000465761.1_1_20:43561720-43565607:+|nuORF	REV__ENST00000465761.1_1_20:43561720-43565607:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	472.2831115722656	3	472.286746	1413.83841	-6.0447	-0.0028549	-0.27842	-0.00013149	-6.3232	-0.0029863	472.28675973301637	159.08	3.3809	157.81	156.71	160.09	-1.267					177	72	4	0	0	0	0.72545	1	13776	13776		9.6461	0	1	110830	+		23985	26176	19618	19641	26676	26676					0.14804230493268733
KKTAGTTT	8	Unmodified	_KKTAGTTT_					0	0	0		ENST00000327111.7_1_5:92920401-92920743:+|nuORF	ENST00000327111.7_1_5:92920401-92920743:+|nuORF	ENST00000327111.7_1_5:92920401-92920743:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	404.2330017089844	2	404.232168	806.449782	1.3505	0.00054594	0.46264	0.00018701	1.8132	0.00073295	404.23224424215823	134.98	1.1763	134.75	134.34	135.52	-0.22696					59	23	3	0	0	0	0.75006	1	13391	13391		16.473	0	1	117390			23986	10412	19619	19642	26677	26677					0.03881522972039875
KKTEEIIVS	9	Unmodified	_KKTEEIIVS_					0	0	0			REV__nc|ENSG00000007062|O43490-5|PROM1	REV__nc|ENSG00000007062|O43490-5|PROM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.734130859375	2	523.808239	1045.60193	-1.2603	-0.00066016	0.68337	0.00035796	-0.57693	-0.0003022	523.8082929515699	49.835	0.26446	49.835	49.679	49.944	0					9	5	2	0	0	0	0.027455	1	3749	3749		42.396	13.247	1	183740	+		23987	16428	19620	19643	26678	26678					0.0809487892895504
KKTEEIIVS	9	Unmodified	_KKTEEIIVS_					0	0	0			REV__nc|ENSG00000007062|O43490-5|PROM1	REV__nc|ENSG00000007062|O43490-5|PROM1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	523.808239	1045.60193	-1.1686	-0.00061211	3.5181	0.0018428	2.3495	0.0012307	524.3120781005272	53.072	0.69798	49.864	49.502	50.2	-3.208	0.014485	0.0010994	NaN	47.657	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30493	+		23988	16428	19620	19643							0.0809487892895504
KKTFNTSL	8	Unmodified	_KKTFNTSL_					0	0	0			REV__tr|A0A7D6ZFB3|A0A7D6ZFB3_9CLOTAnthranilatesynthasecomponentIOS=ClostridiumintestinaleOX=36845GN=HZF06_17170PE=4SV=1	REV__tr|A0A7D6ZFB3|A0A7D6ZFB3_9CLOTAnthranilatesynthasecomponentIOS=ClostridiumintestinaleOX=36845GN=HZF06_17170PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	469.7690734863281	2	469.768917	937.523281	-0.78617	-0.00036932	0.024812	1.1656E-05	-0.76136	-0.00035766	469.7689282580464	37.092	1.0112	37.092	36.84	37.851	0					55	21	5	0	0	0	0.48084	1	1998	1998		79.451	0	1	3174000	+		23989	31965	19621	19644	26679	26679					0.052020714145328384
KKTKVLPMP	9	Unmodified	_KKTKVLPMP_					0	0	0			REV__tr|A0A553SUS4|A0A553SUS4_NIACIRhodanesedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06170PE=3SV=1	REV__tr|A0A553SUS4|A0A553SUS4_NIACIRhodanesedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06170PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.2967529296875	2	521.328088	1040.64162	-0.50472	-0.00026312	-2.1363	-0.0011137	-2.6411	-0.0013769	521.8285214030864	99.776	1.0909	98.945	98.517	99.608	-0.83051					35	21	3	0	0	0	0.027462	1	9097	9097		16.473	0	1	44113	+		23990	31115	19622	19645	26680	26680					0.12292727398653369
KKTKVLPMP	9	Unmodified	_KKTKVLPMP_					0	0	0			REV__tr|A0A553SUS4|A0A553SUS4_NIACIRhodanesedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06170PE=3SV=1	REV__tr|A0A553SUS4|A0A553SUS4_NIACIRhodanesedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06170PE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	521.328088	1040.64162	1.9902	0.0010376	-2.8703	-0.0014963	-0.88005	-0.0004588	521.3265797344137	98.87	0.43152	98.87	98.683	99.115	0	-0.037674	-0.00017503	NaN	16.473	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2436900	+		23991	31115	19622	19645							0.12292727398653369
KKTLYLRLH	9	Unmodified	_KKTLYLRLH_					0	0	0		ENST00000514881.1_1_4:159199390-159199825:+|nuORF	ENST00000514881.1_1_4:159199390-159199825:+|nuORF	ENST00000514881.1_1_4:159199390-159199825:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.3674926757812	2	586.369133	1170.72371	-0.81014	-0.00047504	0.51223	0.00030036	-0.29791	-0.00017468	586.3692629340027	94.416	2.9527	91.947	91.666	94.618	-2.4685					167	58	5	0	0	0	0.48047	1	8253	8253		44.377	0.26039	1	1387500			23992	13035	19623	19646	26681	26681					0.14517965801974242
KKTNKEKTK	9	Unmodified	_KKTNKEKTK_					0	0	0			REV__ENSG00000074356|ENST00000389005|NCBP3	REV__ENSG00000074356|ENST00000389005|NCBP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.3057250976562	2	552.840405	1103.66626	-0.23133	-0.00012789	3.7885	0.0020944	3.5572	0.0019666	552.8422396020754	43.012	0.38807	43.012	42.839	43.227	0					11	8	2	0	0	0	0.027462	1	2837	2837		40.778	5.1599	1	138090	+		23993	16949	19624	19647	26682	26682					0.11857078805746823
KKTRKLTSSA	10	Unmodified	_KKTRKLTSSA_					0	0	0			REV__nc|ENSG00000138162|O95359-6|TACC2	REV__nc|ENSG00000138162|O95359-6|TACC2	MULTI-MSMS	OvCa9_classI_Rep3	3	560.3394775390625	2	560.345855	1118.67716	-7.144	-0.0040031	-2.8174	-0.0015787	-9.9613	-0.0055818	560.3441648343594	161.4	2.0053	160.03	159.58	161.59	-1.3692					105	41	5	0	0	0	0.74374	1	14088	14088		25.574	3.6142	1	475740	+		23994	19518	19625	19648	26683	26683					0.1225648118004301
KKTRREAPPGV	11	Unmodified	_KKTRREAPPGV_					0	0	0		MAML1|p.L146P|1|0.09|ENSG00000161021|chr5:179765447-179765447|T/C|missense_variant	MAML1|p.L146P|1|0.09|ENSG00000161021|chr5:179765447-179765447|T/C|missense_variant	MAML1|p.L146P|1|0.09|ENSG00000161021|chr5:179765447-179765447|T/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8682861328125	2	619.870028	1237.7255	-1.8762	-0.001163	0.9332	0.00057847	-0.94295	-0.00058451	619.8704234308321	147.79	3.8764	146.35	144.25	148.12	-1.4351					189	77	4	0	0	0	0.72064	1	14644	14644		22.58	2.5829	1	269210			23995	14815	19626	19649	26684	26684					0.11614974819917734
KKTTAIIA	8	Unmodified	_KKTTAIIA_					0	0	0		nc|ENSG00000152061|B7ZAP0|RABGAP1L;ENST00000469553.6_1_1:174927262-174959135:+|nuORF;nc|ENSG00000152061|Q5R372-7|RABGAP1L;nc|ENSG00000152061|Q5R372-8|RABGAP1L;nc|ENSG00000152061|Q5R372-6|RABGAP1L;nc|ENSG00000152061|Q5R372-5|RABGAP1L;ENSG00000152061|ENST00000681986|RABGAP1L	nc|ENSG00000152061|B7ZAP0|RABGAP1L	nc|ENSG00000152061|B7ZAP0|RABGAP1L	MULTI-MSMS	OvCa9_classI_Rep2	2	423.2750549316406	2	423.276378	844.538203	-1.0746	-0.00045487	-1.9263	-0.00081535	-3.0009	-0.0012702	423.27545611036373	140.26	1.6211	140.03	139.45	141.07	-0.22696					84	32	4	0	0	0	0.7327	2	14074	13996;14074		12.959	0.75233	1	166850			23996	5600	19627	19650	26685;26686	26686					0.10971563282510033
KKTTAIIA	8	Unmodified	_KKTTAIIA_					0	0	0		nc|ENSG00000152061|B7ZAP0|RABGAP1L;ENST00000469553.6_1_1:174927262-174959135:+|nuORF;nc|ENSG00000152061|Q5R372-7|RABGAP1L;nc|ENSG00000152061|Q5R372-8|RABGAP1L;nc|ENSG00000152061|Q5R372-6|RABGAP1L;nc|ENSG00000152061|Q5R372-5|RABGAP1L;ENSG00000152061|ENST00000681986|RABGAP1L	nc|ENSG00000152061|B7ZAP0|RABGAP1L	nc|ENSG00000152061|B7ZAP0|RABGAP1L	MULTI-MSMS	OvCa9_classI_Rep3	3	423.27520751953125	2	423.276378	844.538203	-1.5369	-0.00065052	-1.6206	-0.00068596	-3.1575	-0.0013365	423.27558847705467	140.82	1.576	139.79	139.38	140.96	-1.0339					74	31	4	0	0	0	0.74394	2	11661	11611;11661		14.664	0	1	296010			23997	5600	19627	19650	26687;26688	26688					0.10971563282510033
KKTTAIIA	8	Unmodified	_KKTTAIIA_					0	0	0		nc|ENSG00000152061|B7ZAP0|RABGAP1L;ENST00000469553.6_1_1:174927262-174959135:+|nuORF;nc|ENSG00000152061|Q5R372-7|RABGAP1L;nc|ENSG00000152061|Q5R372-8|RABGAP1L;nc|ENSG00000152061|Q5R372-6|RABGAP1L;nc|ENSG00000152061|Q5R372-5|RABGAP1L;ENSG00000152061|ENST00000681986|RABGAP1L	nc|ENSG00000152061|B7ZAP0|RABGAP1L	nc|ENSG00000152061|B7ZAP0|RABGAP1L	MULTI-MSMS	OvCa9_classI_Rep4_	4	423.27581787109375	2	423.276378	844.538203	0.49298	0.00020867	-3.7053	-0.0015684	-3.2124	-0.0013597	423.27473332954634	141.2	1.9317	139.74	139.4	141.33	-1.4627					94	36	4	0	0	0	0.74595	1	13782	13782		14.664	0.88877	1	1644700			23998	5600	19627	19650	26689	26689					0.10971563282510033
KKTTTVGVVI	10	Unmodified	_KKTTTVGVVI_					0	0	0		tr|A0A553SJT9|A0A553SJT9_NIACICatabolitecontrolproteinAOS=NialliacirculansOX=1397GN=ccpAPE=4SV=1	tr|A0A553SJT9|A0A553SJT9_NIACICatabolitecontrolproteinAOS=NialliacirculansOX=1397GN=ccpAPE=4SV=1	tr|A0A553SJT9|A0A553SJT9_NIACICatabolitecontrolproteinAOS=NialliacirculansOX=1397GN=ccpAPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.3031616210938	2	523.334424	1044.6543	-1.2047	-0.00063045	-1.2239	-0.00064053	-2.4286	-0.001271	523.3336501236713	26.406	0.14961	26.406	26.292	26.442	0					4	2	2	0	0	0	0.027284	1	673	673		20.947	8.7401	1	15673			23999	33542	19628	19651	26690	26690					0.13375462062572296
KKTVQQIVQ	9	Unmodified	_KKTVQQIVQ_					0	0	0			REV__ENSG00000103994|ENST00000564754|ZNF106	REV__ENSG00000103994|ENST00000564754|ZNF106	MULTI-MSMS	OvCa99_classI_Rep5	1	536.3294067382812	2	536.329673	1070.64479	-0.96821	-0.00051928	-0.035768	-1.9184E-05	-1.004	-0.00053846	536.3296972347545	34.322	1.6874	34.322	34.065	35.753	0					89	35	5	0	0	0	0.33652	1	1681	1681		58.782	9.3404	1	13293000	+		24000	17638	19629	19652	26691	26691					0.11229693777045213
KKVHTPERR	9	Unmodified	_KKVHTPERR_					0	0	0		ENST00000599145.1_1_19:58928113-58929148:+|nuORF;ENSG00000171574|ENST00000306910|ZNF584	ENST00000599145.1_1_19:58928113-58929148:+|nuORF	ENST00000599145.1_1_19:58928113-58929148:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8424072265625	2	575.843813	1149.67307	-2.1491	-0.0012375	0.86974	0.00050083	-1.2794	-0.00073671	575.8441928035448	141.47	4.0925	141.24	139.21	143.3	-0.22696					166	82	3	0	0	0	0.68424	1	14225	14225		21.96	0	1	100260			24001	14204	19630	19653	26692	26692					0.10422436476960684
KKVKLDLEAR	10	Unmodified	_KKVKLDLEAR_					0	0	0		ENSG00000104129|ENST00000220496|DNAJC17;ENST00000559238.5_1_15:41060140-41072106:-|nuORF	ENSG00000104129|ENST00000220496|DNAJC17	ENSG00000104129|ENST00000220496|DNAJC17	MULTI-MSMS	OvCa9_classI_Rep2	2	600.3765869140625	2	600.377155	1198.73976	2.4727	0.0014845	-2.4024	-0.0014424	0.070273	4.219E-05	600.3755689581569	26.426	0.84442	23.716	23.517	24.362	-2.7097					46	24	3	0	0	0	0.55109	1	376	376		47.96	1.9873	1	69653			24002	2353	19631	19654	26693	26693					0.1483362724820836
KKVKRKVK	8	Unmodified	_KKVKRKVK_					0	0	0		ENST00000371826.3_1_10:91066380-91066419:+|nuORF	ENST00000371826.3_1_10:91066380-91066419:+|nuORF	ENST00000371826.3_1_10:91066380-91066419:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3280334472656	2	507.368936	1012.72332	0.06616	3.3567E-05	-4.4833	-0.0022747	-4.4172	-0.0022411	507.36590261480563	65.086	0.19432	65.086	64.995	65.19	0					6	4	2	0	0	0	0.028476	1	5946	5946		7.6903	3.705	1	50390			24003	10967	19632	19655	26694	26694					0.21746590872794513
KKVKTPQPK	9	Unmodified	_KKVKTPQPK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MULTI-MSMS	OvCa9_classI_Rep2	2	527.3424072265625	2	527.342584	1052.67061	2.2817	0.0012032	-2.4212	-0.0012768	-0.13953	-7.3579E-05	527.3412130770646	27.081	0.8382	24.371	24.073	24.911	-2.7097					49	23	3	0	0	0	0.69666	1	446	446		19.104	1.7386	1	32709			24004	3662	19633	19656	26695	26695					0.1463858801932929
KKVQFQANF	9	Unmodified	_KKVQFQANF_					0	0	0			REV__CSMD1|p.Y2458Efs*21|1|0.08|ENSG00000183117|chr8:3087202-3087203|-/TGAAAATTTC|frameshift_variant	REV__CSMD1|p.Y2458Efs*21|1|0.08|ENSG00000183117|chr8:3087202-3087203|-/TGAAAATTTC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	555.3082885742188	2	555.308741	1108.60293	0.15549	8.6343E-05	-3.7612	-0.0020886	-3.6057	-0.0020023	555.3066111223169	21.768	0.32327	21.768	21.612	21.935	0					23	11	3	0	0	0	0.52083	1	141	141		40.573	4.9543	1	64296	+		24005	16243	19634	19657	26696	26696					0.05297138088508291
KKVQLLPFC	9	Unmodified	_KKVQLLPFC_					0	0	0			REV__ENSG00000130052|ENST00000374599|STARD8	REV__ENSG00000130052|ENST00000374599|STARD8	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.8049926757812	2	538.320263	1074.62597	-1.2443	-0.00066981	2.0479	0.0011024	0.80362	0.00043261	538.3211631048822	74.238	0.57716	72.267	72.062	72.639	-1.9711					14	10	2	0	0	0	0.027462	1	6064	6064		38.806	13.356	1	29271	+		24006	18919	19635	19658	26697	26697					0.09164440881636438
KKVQPVTET	9	Unmodified	_KKVQPVTET_					0	0	0			REV__ENSG00000089902|ENST00000262241|RCOR1	REV__ENSG00000089902|ENST00000262241|RCOR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.2866821289062	2	515.300581	1028.58661	-0.3841	-0.00019793	1.499	0.00077246	1.1149	0.00057453	515.2999380150815	58.387	0.64836	54.995	54.701	55.35	-3.392					16	12	2	0	0	0	0.027462	1	3819	3819		44.117	16.235	1	39039	+		24007	17215	19636	19659	26698	26698					0.07346012131779389
KKVRETIPD	9	Unmodified	_KKVRETIPD_					0	0	0			REV__nc|ENSG00000183091|P20929-4|NEB	REV__nc|ENSG00000183091|P20929-4|NEB	MSMS	OvCa99_classI_Rep5	1	543.3207397460938	2	543.319306	1084.62406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.578	1	95.578	95.078	96.078	0								0	0	0	0.03228	1	10440	10440		87.696	30.975	1		+		24008	22341	19637	19660	26699	26699					0.08513103397376653
KKVSDETTTL	10	Unmodified	_KKVSDETTTL_					0	0	0			REV__ENSG00000266714|ENST00000645453|MYO15B	REV__ENSG00000266714|ENST00000645453|MYO15B	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.33056640625	2	561.306061	1120.59757	2.8695	0.0016107	1.8069	0.0010142	4.6764	0.0026249	561.3077120911851	107.45	0.71449	107.45	107.14	107.86	0					31	16	3	0	0	0	0.026956	1	12115	12115		19.997	9.1312	1	544930	+		24009	23589	19638	19661	26700	26700					0.042093697153859466
KKVSGFKVY	9	Unmodified	_KKVSGFKVY_					0	0	0		ENSG00000162738|ENST00000368061|VANGL2	ENSG00000162738|ENST00000368061|VANGL2	ENSG00000162738|ENST00000368061|VANGL2	MULTI-MSMS	OvCa9_classI_Rep2	2	528.315673828125	2	528.316035	1054.61752	-1.6359	-0.00086425	1.6184	0.00085502	-0.017477	-9.2333E-06	528.3167083597772	101.46	1.3869	100.7	100.32	101.71	-0.76401					60	19	4	0	0	0	0.48324	1	9325	9325		44.117	3.3386	1	372150			24010	6225	19639	19662	26701	26701					0.09239210236682993
KKVSHSSKK	9	Unmodified	_KKVSHSSKK_					0	0	0		nc|ENSG00000116731|Q13029-5|PRDM2;nc|ENSG00000116731|Q13029-3|PRDM2;nc|ENSG00000116731|Q13029-2|PRDM2;ENSG00000116731|ENST00000311066|PRDM2	nc|ENSG00000116731|Q13029-5|PRDM2	nc|ENSG00000116731|Q13029-5|PRDM2	MULTI-MSMS	OvCa9_classI_Rep2	2	514.8138427734375	2	514.81419	1027.61383	2.5746	0.0013254	-2.6896	-0.0013847	-0.11509	-5.9251E-05	514.8126670332618	27.295	1.0989	24.585	24.394	25.493	-2.7097					55	24	4	0	0	0	0.3076	1	473	473		62.107	1.9892	1	264850			24011	3204	19640	19663	26702	26702					0.10112540462819197
KKVSIIDAPD	10	Unmodified	_KKVSIIDAPD_					0	0	0		ENSG00000171115|ENST00000307271|GIMAP8;GIMAP8|p.C521Wfs*50|1|0.06|ENSG00000171115|chr7:150477345-150477345|T/-|frameshift_variant	ENSG00000171115|ENST00000307271|GIMAP8	ENSG00000171115|ENST00000307271|GIMAP8	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.7772827148438	2	543.313689	1084.61282	1.9438	0.0010561	0.19751	0.00010731	2.1413	0.0011634	543.3136872599807	117.59	1.1189	117.59	117.23	118.34	0					40	23	2	0	0	0	0.026891	1	13544	13544		24.519	0	1	344570			24012	7173	19641	19664	26703	26703					0.07390281303241863
KKVTSSAS	8	Unmodified	_KKVTSSAS_					0	0	0			REV__nc|ENSG00000129680|Q8IWC1-2|MAP7D3	REV__nc|ENSG00000129680|Q8IWC1-2|MAP7D3	MULTI-MSMS	OvCa9_classI_Rep2	2	404.232421875	2	404.232168	806.449782	1.3505	0.00054594	0.46264	0.00018701	1.8132	0.00073295	404.23224424215823	134.98	1.1763	134.75	134.34	135.52	-0.22696					59	23	3	0	0	0	0.75006	1	13348	13348		16.473	0.83134	1	117390	+		24013	18906	19642	19665	26704	26704					0.038815229720512434
KKVVMLKYG	9	Unmodified	_KKVVMLKYG_					0	0	0			REV__tr|A0A7D6ZWG3|A0A7D6ZWG3_9CLOTEutN/CcmLfamilymicrocompartmentproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17700PE=4SV=1	REV__tr|A0A7D6ZWG3|A0A7D6ZWG3_9CLOTEutN/CcmLfamilymicrocompartmentproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17700PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.2864990234375	2	533.328088	1064.64162	1.3506	0.00072029	-3.687	-0.0019664	-2.3364	-0.0012461	533.3258329489043	146.7	0.58917	146.7	146.57	147.16	0					20	11	3	0	0	0	0.027462	1	17184	17184		17.365	6.4994	1	66397	+		24014	32284	19643	19666	26705	26705					0.1118872739868948
KKVVVVEQN	9	Unmodified	_KKVVVVEQN_					0	0	0		ZNF740|p.S92Kfs*9|1|0.11|ENSG00000139651|chr12:53185976-53185986|GTTCTTTTCAA/-|frameshift_variant;ENST00000549739.1_1_12:53579221-53580407:+|nuORF;ENSG00000139651|ENST00000416904|ZNF740	ZNF740|p.S92Kfs*9|1|0.11|ENSG00000139651|chr12:53185976-53185986|GTTCTTTTCAA/-|frameshift_variant	ZNF740|p.S92Kfs*9|1|0.11|ENSG00000139651|chr12:53185976-53185986|GTTCTTTTCAA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	521.8155517578125	2	521.816399	1041.61824	0.79827	0.00041655	-3.2909	-0.0017172	-2.4926	-0.0013007	521.8145751675044	30.789	0.8863	28.08	27.903	28.789	-2.7097					32	17	3	0	0	0	0.64427	1	900	900		26.693	1.1189	1	123530			24015	4795	19644	19667	26706	26706					0.09910004885728085
KKVYYEKQR	9	Unmodified	_KKVYYEKQR_					0	0	0		tr|A0A7D6VPW1|A0A7D6VPW1_9CLOTLCPfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18365PE=3SV=1	tr|A0A7D6VPW1|A0A7D6VPW1_9CLOTLCPfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18365PE=3SV=1	tr|A0A7D6VPW1|A0A7D6VPW1_9CLOTLCPfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18365PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.5911560058594	3	414.571545	1240.69281	0.95427	0.00039561	-4.06	-0.0016832	-3.1057	-0.0012876	414.5697931392082	33.105	1.2397	30.41	30.003	31.243	-2.6954					29	24	2	0	0	0	0.027462	1	817	817		44.377	0	1	17192			24016	34803	19645	19668	26707	26707					0.08208767697078656
KKWKRQAI	8	Unmodified	_KKWKRQAI_					0	0	0			REV__ENST00000565182.5_1_16:46741618-46744787:-|nuORF	REV__ENST00000565182.5_1_16:46741618-46744787:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.7964477539062	2	529.335093	1056.65563	-0.96592	-0.0005113	1.8346	0.00097111	0.86866	0.00045981	529.3361246195652	58.785	0.50439	55.393	55.15	55.655	-3.392					13	9	2	0	0	0	0.028476	1	3878	3878		33.516	8.0654	1	17804	+		24017	19700	19646	19669	26708	26708					0.12957140941989564
KKWNLMKYRWY	11	Unmodified	_KKWNLMKYRWY_					0	0	0		tr|A0A7D6W1F6|A0A7D6W1F6_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02570PE=4SV=1	tr|A0A7D6W1F6|A0A7D6W1F6_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02570PE=4SV=1	tr|A0A7D6W1F6|A0A7D6W1F6_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02570PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.8280639648438	3	539.290384	1614.84932	2.6036	0.0014041	2.251	0.0012139	4.8546	0.002618	539.2915067126793	75.251	0.59599	75.251	75.005	75.601	0					48	14	5	0	0	0	0.026435	1	7512	7512		14.086	3.4992	1	6667800			24018	35410	19647	19670	26709	26709					0.06649309595923114
KKWQLQLQ	8	Unmodified	_KKWQLQLQ_					0	0	0			REV__ENST00000330154.6_1_X:100913067-100913482:-|nuORF	REV__ENST00000330154.6_1_X:100913067-100913482:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	536.3214111328125	2	536.319109	1070.62366	-0.23032	-0.00012352	0.37598	0.00020164	0.14566	7.8121E-05	536.3191954573991	64.506	0.49977	64.506	64.21	64.71	0					31	11	3	0	0	0	0.14754	1	5856	5856		133.47	4.6533	1	2619700	+		24019	24523	19648	19671	26710	26710					0.09117728468186215
KKWRHGKLTRY	11	Unmodified	_KKWRHGKLTRY_					0	0	0			REV__ASXL1-TM9SF4|2|fusion	REV__ASXL1-TM9SF4|2|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.6185607910156	3	491.624755	1471.85244	-0.41537	-0.00020421	-3.4062	-0.0016746	-3.8215	-0.0018788	491.6231448241288	23.175	0.35468	23.175	23.042	23.397	0					12	6	3	0	0	0	0.026497	1	289	289		6.001	0	1	40827	+		24020	15672	19649	19672	26711	26711					0.13538320764928358
KKWTKIKGG	9	Unmodified	_KKWTKIKGG_					0	0	0			REV__nc|ENSG00000144824|Q86SQ0-2|PHLDB2	REV__nc|ENSG00000144824|Q86SQ0-2|PHLDB2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.7887573242188	2	523.329476	1044.6444	-2.6565	-0.0013902	1.9233	0.0010065	-0.73317	-0.00038369	523.330300655201	49.574	1.0368	46.433	46.095	47.132	-3.1416					32	19	3	0	0	0	0.027453	1	2829	2829		64.207	18.255	1	39395	+		24021	19937	19650	19673	26712	26712					0.12386318847848088
KKWTKIKGG	9	Unmodified	_KKWTKIKGG_					0	0	0			REV__nc|ENSG00000144824|Q86SQ0-2|PHLDB2	REV__nc|ENSG00000144824|Q86SQ0-2|PHLDB2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	523.329476	1044.6444	-0.62155	-0.00032527	0.34214	0.00017905	-0.27941	-0.00014622	523.329453268897	48.958	1.0395	46.197	45.829	46.868	-2.7603	-0.11778	-0.00041996	NaN	64.207	40	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71416	+		24022	19937	19650	19673							0.12386318847848088
KKYKINDILYL	11	Unmodified	_KKYKINDILYL_					0	0	0		tr|A0A553SSF0|A0A553SSF0_NIACILAGLIDADGhomingendonucleaseOS=NialliacirculansOX=1397GN=CEQ21_02875PE=4SV=1	tr|A0A553SSF0|A0A553SSF0_NIACILAGLIDADGhomingendonucleaseOS=NialliacirculansOX=1397GN=CEQ21_02875PE=4SV=1	tr|A0A553SSF0|A0A553SSF0_NIACILAGLIDADGhomingendonucleaseOS=NialliacirculansOX=1397GN=CEQ21_02875PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.616943359375	3	470.950022	1409.82824	-0.10608	-4.9957E-05	-3.9781	-0.0018735	-4.0842	-0.0019234	470.94806579910886	23.14	1.0145	23.14	22.821	23.836	0					50	20	4	0	0	0	0.026497	1	373	373		9.6461	1.8416	1	282680			24023	34369	19651	19674	26713	26713					0.1397162276803101
KKYPGVIYV	9	Unmodified	_KKYPGVIYV_					0	0	0		CLN6|p.P297S|1|0.15|ENSG00000128973|chr15:68208187-68208187|G/A|missense_variant;CLN6|p.E298G|1|0.06|ENSG00000128973|chr15:68208183-68208183|T/C|missense_variant;ENSG00000128973|ENST00000249806|CLN6;nc|ENSG00000128973|Q9NWW5-2|CLN6	CLN6|p.P297S|1|0.15|ENSG00000128973|chr15:68208187-68208187|G/A|missense_variant	CLN6|p.P297S|1|0.15|ENSG00000128973|chr15:68208187-68208187|G/A|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	533.8202514648438	2	533.81841	1065.62227	-0.74068	-0.00039539	0.76076	0.00040611	0.020083	1.0721E-05	533.8186404644281	70.307	0.63513	70.307	70.046	70.681	0					42	15	4	0	0	0	0.17908	1	6728	6728		79.939	24.435	1	6408600			24024	585	19652	19675	26714	26714					0.0920809437943717
KKYQKGPVL	9	Unmodified	_KKYQKGPVL_					0	0	0		chr1:43164805-43167160|112|20.4|0.44|5.55|-|2|EBNA1BP2,EBNA1BP2|1	chr1:43164805-43167160|112|20.4|0.44|5.55|-|2|EBNA1BP2,EBNA1BP2|1	chr1:43164805-43167160|112|20.4|0.44|5.55|-|2|EBNA1BP2,EBNA1BP2|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.8054809570312	2	530.829309	1059.64407	-0.043473	-2.3077E-05	-3.7317	-0.0019809	-3.7752	-0.002004	530.8272158530042	35.081	0.6521	32.232	32.038	32.69	-2.849					19	12	2	0	0	0	0.027462	1	1078	1078		30.504	11.144	1	32196			24025	259	19653	19676	26715	26715					0.11662899127986748
KKYRNLKR	8	Unmodified	_KKYRNLKR_					0	0	0		ENST00000380503.7_1_16:30007553-30007939:+|nuORF;ENST00000563040.5_1_16:30007580-30010601:+|nuORF;ENST00000568043.5_1_16:30007580-30007859:+|nuORF;nc|ENSG00000169592|Q8NBZ0-2|INO80E;ENSG00000169592|ENST00000563197|INO80E	ENST00000380503.7_1_16:30007553-30007939:+|nuORF	ENST00000380503.7_1_16:30007553-30007939:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.8311157226562	2	553.351274	1104.688	2.1719	0.0012018	-2.1126	-0.001169	0.05929	3.2808E-05	553.3508949075219	77.22	0.20993	77.22	77.126	77.336	0					5	4	2	0	0	0	0.028476	1	7780	7780		13.775	0	1	186040			24026	7022	19654	19677	26716	26716					0.13983928344987362
KKYSNVSI	8	Unmodified	_KKYSNVSI_					0	0	0		ENSG00000116793|ENST00000369604|PHTF1;ENST00000481652.1_1_1:114242829-114248598:-|nuORF	ENSG00000116793|ENST00000369604|PHTF1	ENSG00000116793|ENST00000369604|PHTF1	MULTI-MSMS	OvCa99_classI_Rep5	1	469.7688903808594	2	469.768917	937.523281	-0.78617	-0.00036932	0.024812	1.1656E-05	-0.76136	-0.00035766	469.7689282580464	37.092	1.0112	37.092	36.84	37.851	0					55	21	5	0	0	0	0.68714	1	2020	2020		45.952	1.5748	1	3174000			24027	3210	19655	19678	26717	26717					0.052020714145328384
KKYTLVEVKS	10	Unmodified	_KKYTLVEVKS_					0	0	0			REV__nc|ENSG00000162627|Q9UNH6-2|SNX7	REV__nc|ENSG00000162627|Q9UNH6-2|SNX7	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8547973632812	2	597.858264	1193.70197	-1.5377	-0.00091935	-1.5701	-0.00093869	-3.1078	-0.001858	597.8570606153338	148.28	4.8676	146.85	145.38	150.25	-1.435					291	102	5	0	0	0	0.818	1	14466	14466		16.717	1.0756	1	767860	+		24028	20757	19656	19679	26718	26718					0.11287116262769814
KLAAEDASSF	10	Unmodified	_KLAAEDASSF_					0	0	0			REV__nc|ENSG00000131844|Q9HCC0-2|MCCC2	REV__nc|ENSG00000131844|Q9HCC0-2|MCCC2	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.3218383789062	2	519.758746	1037.50294	-0.04548	-2.3638E-05	0.70477	0.00036631	0.65929	0.00034267	520.2611261837442	59.333	0.47325	56.553	56.294	56.767	-2.7801					10	8	2	0	0	0	0.026688	1	4344	4344		32.812	10.853	1	8375.8	+		24029	19037	19657	19680	26719	26719					-0.014311440359733751
KLAAGRVKCL	10	Unmodified	_KLAAGRVKCL_					0	0	0			REV__ENST00000478406.5_1_1:227128069-227169984:+|nuORF	REV__ENST00000478406.5_1_1:227128069-227169984:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.8340454101562	2	529.828786	1057.64302	3.1683	0.0016787	2.424	0.0012843	5.5923	0.0029629	529.8320961796451	131.94	1.8053	130.44	130.12	131.93	-1.5014					94	35	5	0	0	0	0.72319	1	12680	12680		27.882	0	1	145640	+		24030	20802	19658	19681	26720	26720					0.11650361487431837
KLAALWFPE	9	Unmodified	_KLAALWFPE_					0	0	0		ENSG00000169026|ENST00000322224|SLC49A3;nc|ENSG00000169026|Q6UXD7|SLC49A3	ENSG00000169026|ENST00000322224|SLC49A3	ENSG00000169026|ENST00000322224|SLC49A3	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.7640991210938	2	537.80276	1073.59097	0.1023	5.5015E-05	-0.14505	-7.8007E-05	-0.042752	-2.2992E-05	537.8019109046584	70.896	0.54706	70.896	70.603	71.15	0					21	13	2	0	0	0	0.027426	1	6853	6853		44.117	0	1	1519600			24031	6968	19659	19682	26721	26721					0.057115213453243996
KLADFAARV	9	Unmodified	_KLADFAARV_					0	0	0			REV__tr|A0A7D6ZUL7|A0A7D6ZUL7_9CLOT3-oxoacyl-ACPsynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12450PE=4SV=1	REV__tr|A0A7D6ZUL7|A0A7D6ZUL7_9CLOT3-oxoacyl-ACPsynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12450PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.791259765625	2	495.790184	989.565815	-0.13	-6.4452E-05	0.041522	2.0586E-05	-0.088477	-4.3866E-05	495.7901797616794	76.175	1.9646	73.236	72.449	74.414	-2.9389					91	40	4	0	0	0	0.18887	1	6027	6027		78.264	5.3845	1	653420	+		24032	32223	19660	19683	26722	26722					0.0706146654274562
KLADFGLAR	9	Unmodified	_KLADFGLAR_					0	0	0		ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13;ENST00000504648.5_1_1:205492597-205500503:+|nuORF;nc|ENSG00000138395|Q96Q40-3|CDK15;ENST00000505932.5_1_1:205492708-205498898:+|nuORF;nc|ENSG00000058091|O94921-3|CDK14;nc|ENSG00000138395|Q96Q40-5|CDK15;ENSG00000138395|ENST00000652192|CDK15;nc|ENSG00000138395|Q96Q40-4|CDK15;GTPBP10-CDK14|1|fusion;ENSG00000117266|ENST00000429964|CDK18;ENSG00000102225|ENST00000357227|CDK16;nc|ENSG00000102225|Q00536-3|CDK16;nc|ENSG00000117266|Q07002-3|CDK18;nc|ENSG00000102225|Q00536-2|CDK16;nc|ENSG00000058091|O94921-2|CDK14;ENST00000473078.1_1_7:92300738-92355023:-|nuORF;nc|ENSG00000123374|P24941-2|CDK2;ENST00000488419.1_1_2:202671387-202725552:+|nuORF;ENST00000551706.1_1_12:58144639-58145133:-|nuORF;ENST00000550971.5_1_12:96677414-96688846:-|nuORF;nc|ENSG00000135446|P11802-2|CDK4;ENST00000554619.5_1_12:56361683-56363594:+|nuORF;ENST00000556656.5_1_12:56361683-56365109:+|nuORF;ENST00000489617.5_1_1:205496852-205498898:+|nuORF;ENST00000506489.1_1_1:205496975-205497827:+|nuORF;nc|ENSG00000164885|Q00535-2|CDK5;ENST00000567351.5_2_17:73997368-73998786:+|nuORF;ENST00000451080.5_1_2:202672326-202741280:+|nuORF;ENSG00000164885|ENST00000485972|CDK5;ENSG00000123374|ENST00000266970|CDK2;ENSG00000135446|ENST00000257904|CDK4;ENSG00000250506|ENST00000448471|CDK3;nc|ENSG00000138395|Q96Q40-6|CDK15;ENSG00000058091|ENST00000380050|CDK14;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;CDK12|p.E928Gfs*27|1|0.54|ENSG00000167258|chr17:39515740-39515741|-/G|frameshift_variant;nc|ENSG00000167258|Q9NYV4-3|CDK12;ENSG00000105810|ENST00000424848|CDK6;chr10:60778668-60780141|406|12.96|0.53|4.61|+|ENST00000448257|CDK1,CDK1;ENSG00000170312|ENST00000395284|CDK1;ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9;ENSG00000059758|ENST00000261211|CDK17;nc|ENSG00000059758|Q00537-2|CDK17	ENSG00000065883|ENST00000181839|CDK13;ENSG00000058091|ENST00000380050|CDK14;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000105810|ENST00000424848|CDK6;chr10:60778668-60780141|406|12.96|0.53|4.61|+|ENST00000448257|CDK1,CDK1;ENSG00000136807|ENST00000373264|CDK9;ENSG00000059758|ENST00000261211|CDK17	nc|ENSG00000167258|Q9NYV4-2|CDK12	MULTI-MSMS	OvCa9_classI_Rep2	2	495.78948974609375	2	495.790184	989.565815	-0.39421	-0.00019544	-0.14867	-7.3711E-05	-0.54288	-0.00026916	495.7900541387645	75.089	1.6578	73.118	72.796	74.454	-1.9711					83	31	5	0	0	0	0.059253	3	6168	6162;6168;6185		113.41	0	1	532910			24033	6776;1339;4514;1241;2503;278;1256	19661	19684	26723;26724;26725	26724					0.0706146654274562
KLADFGLAR	9	Unmodified	_KLADFGLAR_					0	0	0		ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13;ENST00000504648.5_1_1:205492597-205500503:+|nuORF;nc|ENSG00000138395|Q96Q40-3|CDK15;ENST00000505932.5_1_1:205492708-205498898:+|nuORF;nc|ENSG00000058091|O94921-3|CDK14;nc|ENSG00000138395|Q96Q40-5|CDK15;ENSG00000138395|ENST00000652192|CDK15;nc|ENSG00000138395|Q96Q40-4|CDK15;GTPBP10-CDK14|1|fusion;ENSG00000117266|ENST00000429964|CDK18;ENSG00000102225|ENST00000357227|CDK16;nc|ENSG00000102225|Q00536-3|CDK16;nc|ENSG00000117266|Q07002-3|CDK18;nc|ENSG00000102225|Q00536-2|CDK16;nc|ENSG00000058091|O94921-2|CDK14;ENST00000473078.1_1_7:92300738-92355023:-|nuORF;nc|ENSG00000123374|P24941-2|CDK2;ENST00000488419.1_1_2:202671387-202725552:+|nuORF;ENST00000551706.1_1_12:58144639-58145133:-|nuORF;ENST00000550971.5_1_12:96677414-96688846:-|nuORF;nc|ENSG00000135446|P11802-2|CDK4;ENST00000554619.5_1_12:56361683-56363594:+|nuORF;ENST00000556656.5_1_12:56361683-56365109:+|nuORF;ENST00000489617.5_1_1:205496852-205498898:+|nuORF;ENST00000506489.1_1_1:205496975-205497827:+|nuORF;nc|ENSG00000164885|Q00535-2|CDK5;ENST00000567351.5_2_17:73997368-73998786:+|nuORF;ENST00000451080.5_1_2:202672326-202741280:+|nuORF;ENSG00000164885|ENST00000485972|CDK5;ENSG00000123374|ENST00000266970|CDK2;ENSG00000135446|ENST00000257904|CDK4;ENSG00000250506|ENST00000448471|CDK3;nc|ENSG00000138395|Q96Q40-6|CDK15;ENSG00000058091|ENST00000380050|CDK14;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;CDK12|p.E928Gfs*27|1|0.54|ENSG00000167258|chr17:39515740-39515741|-/G|frameshift_variant;nc|ENSG00000167258|Q9NYV4-3|CDK12;ENSG00000105810|ENST00000424848|CDK6;chr10:60778668-60780141|406|12.96|0.53|4.61|+|ENST00000448257|CDK1,CDK1;ENSG00000170312|ENST00000395284|CDK1;ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9;ENSG00000059758|ENST00000261211|CDK17;nc|ENSG00000059758|Q00537-2|CDK17	ENSG00000065883|ENST00000181839|CDK13;ENSG00000058091|ENST00000380050|CDK14;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000105810|ENST00000424848|CDK6;chr10:60778668-60780141|406|12.96|0.53|4.61|+|ENST00000448257|CDK1,CDK1;ENSG00000136807|ENST00000373264|CDK9;ENSG00000059758|ENST00000261211|CDK17	nc|ENSG00000167258|Q9NYV4-2|CDK12	MULTI-MSMS	OvCa9_classI_Rep3	3	495.79083251953125	2	495.790184	989.565815	-0.67131	-0.00033283	0.28242	0.00014002	-0.38888	-0.0001928	495.790145085026	75.108	2.2808	72.698	72.29	74.571	-2.4106					95	44	4	0	0	0	0.014622	7	3781	3771;3776;3781;3787;3795;3801;3807		154.12	0	1	788100			24034	6776;1339;4514;1241;2503;278;1256	19661	19684	26726;26727;26728;26729;26730;26731;26732	26728					0.0706146654274562
KLADFGLAR	9	Unmodified	_KLADFGLAR_					0	0	0		ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13;ENST00000504648.5_1_1:205492597-205500503:+|nuORF;nc|ENSG00000138395|Q96Q40-3|CDK15;ENST00000505932.5_1_1:205492708-205498898:+|nuORF;nc|ENSG00000058091|O94921-3|CDK14;nc|ENSG00000138395|Q96Q40-5|CDK15;ENSG00000138395|ENST00000652192|CDK15;nc|ENSG00000138395|Q96Q40-4|CDK15;GTPBP10-CDK14|1|fusion;ENSG00000117266|ENST00000429964|CDK18;ENSG00000102225|ENST00000357227|CDK16;nc|ENSG00000102225|Q00536-3|CDK16;nc|ENSG00000117266|Q07002-3|CDK18;nc|ENSG00000102225|Q00536-2|CDK16;nc|ENSG00000058091|O94921-2|CDK14;ENST00000473078.1_1_7:92300738-92355023:-|nuORF;nc|ENSG00000123374|P24941-2|CDK2;ENST00000488419.1_1_2:202671387-202725552:+|nuORF;ENST00000551706.1_1_12:58144639-58145133:-|nuORF;ENST00000550971.5_1_12:96677414-96688846:-|nuORF;nc|ENSG00000135446|P11802-2|CDK4;ENST00000554619.5_1_12:56361683-56363594:+|nuORF;ENST00000556656.5_1_12:56361683-56365109:+|nuORF;ENST00000489617.5_1_1:205496852-205498898:+|nuORF;ENST00000506489.1_1_1:205496975-205497827:+|nuORF;nc|ENSG00000164885|Q00535-2|CDK5;ENST00000567351.5_2_17:73997368-73998786:+|nuORF;ENST00000451080.5_1_2:202672326-202741280:+|nuORF;ENSG00000164885|ENST00000485972|CDK5;ENSG00000123374|ENST00000266970|CDK2;ENSG00000135446|ENST00000257904|CDK4;ENSG00000250506|ENST00000448471|CDK3;nc|ENSG00000138395|Q96Q40-6|CDK15;ENSG00000058091|ENST00000380050|CDK14;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;CDK12|p.E928Gfs*27|1|0.54|ENSG00000167258|chr17:39515740-39515741|-/G|frameshift_variant;nc|ENSG00000167258|Q9NYV4-3|CDK12;ENSG00000105810|ENST00000424848|CDK6;chr10:60778668-60780141|406|12.96|0.53|4.61|+|ENST00000448257|CDK1,CDK1;ENSG00000170312|ENST00000395284|CDK1;ENSG00000136807|ENST00000373264|CDK9;nc|ENSG00000136807|P50750-2|CDK9;ENSG00000059758|ENST00000261211|CDK17;nc|ENSG00000059758|Q00537-2|CDK17	ENSG00000065883|ENST00000181839|CDK13;ENSG00000058091|ENST00000380050|CDK14;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000105810|ENST00000424848|CDK6;chr10:60778668-60780141|406|12.96|0.53|4.61|+|ENST00000448257|CDK1,CDK1;ENSG00000136807|ENST00000373264|CDK9;ENSG00000059758|ENST00000261211|CDK17	nc|ENSG00000167258|Q9NYV4-2|CDK12	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.7916259765625	2	495.790184	989.565815	-0.13	-6.4452E-05	0.041522	2.0586E-05	-0.088477	-4.3866E-05	495.7901797616794	76.175	1.9646	73.236	72.449	74.414	-2.9389					91	40	4	0	0	0	0.094791	2	6037	6037;6053		98.582	0	1	653420			24035	6776;1339;4514;1241;2503;278;1256	19661	19684	26733;26734	26733					0.0706146654274562
KLADIEAKL	9	Unmodified	_KLADIEAKL_					0	0	0			REV__tr|A0A553SHZ8|A0A553SHZ8_NIACITypeVIIsecretionproteinEssCOS=NialliacirculansOX=1397GN=essCPE=4SV=1	REV__tr|A0A553SHZ8|A0A553SHZ8_NIACITypeVIIsecretionproteinEssCOS=NialliacirculansOX=1397GN=essCPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	500.80682373046875	2	500.8055	999.596446	-0.4488	-0.00022476	0.50743	0.00025412	0.058629	2.9362E-05	500.8054693151442	55.938	0.93824	55.938	55.559	56.498	0					45	22	3	0	0	0	0.2077	1	4601	4601		75.043	5.4157	1	2792000	+		24036	29856	19662	19685	26735	26735					0.09663200137117656
KLADIEAKL	9	Unmodified	_KLADIEAKL_					0	0	0			REV__tr|A0A553SHZ8|A0A553SHZ8_NIACITypeVIIsecretionproteinEssCOS=NialliacirculansOX=1397GN=essCPE=4SV=1	REV__tr|A0A553SHZ8|A0A553SHZ8_NIACITypeVIIsecretionproteinEssCOS=NialliacirculansOX=1397GN=essCPE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	500.8055	999.596446	-0.4488	-0.00022476	0.50743	0.00025412	0.058629	2.9362E-05	500.8054693151442	55.938	0.93824	55.938	55.559	56.498	0	0	0	NaN	75.043	45	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2792000	+		24037	29856	19662	19685							0.09663200137117656
KLADTAPTL	9	Unmodified	_KLADTAPTL_					0	0	0			REV__nc|ENSG00000102900|Q8N1F7-2|NUP93	REV__nc|ENSG00000102900|Q8N1F7-2|NUP93	MULTI-SECPEP	OvCa99_classI_Rep5	1	466.2651062011719	2	465.26875	928.522947	-0.3434	-0.00015977	0.41616	0.00019363	0.072762	3.3854E-05	465.26873525424963	67.735	0.62953	67.735	67.448	68.077	0					32	15	3	0	0	0	0.027462	1	6316	6316		29.15	4.9468	1	1160800	+		24038	17578	19663	19686	26736	26736					0.05582651694669494
KLADYKNKV	9	Unmodified	_KLADYKNKV_					0	0	0		ENSG00000196569|ENST00000421865|LAMA2;LAMA2|p.K2491Lfs*57|1|0.05|ENSG00000196569|chr6:129478711-129478712|-/CT|frameshift_variant	ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	MULTI-MSMS	OvCa99_classI_Rep5	1	539.8186645507812	2	539.816399	1077.61824	0.14631	7.8983E-05	0.15777	8.5166E-05	0.30408	0.00016415	539.8163284640996	62.795	0.55902	62.795	62.581	63.14	0					35	13	4	0	0	0	0.14855	1	5611	5611		85.161	7.8432	1	3224000			24039	8627	19664	19687	26737	26737					0.0825400488570267
KLAEGVLDV	9	Unmodified	_KLAEGVLDV_					0	0	0		nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L;nc|ENSG00000183530|Q5THK1-3|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	MULTI-MSMS	OvCa99_classI_Rep5	1	472.2779235839844	2	472.276575	942.538597	3.0217	0.0014271	-0.82354	-0.00038894	2.1981	0.0010381	472.2761154006863	90.008	0.54167	90.008	89.804	90.346	0					20	12	2	0	0	0	0.075543	1	9636	9636		104.06	24.344	1	1147000			24040	8082	19665	19688	26738	26738					0.0650293821172454
KLAELEEALQK	11	Unmodified	_KLAELEEALQK_					0	0	0		ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647	ENST00000552629.5_1_12:52910419-52914113:-|nuORF	ENST00000552629.5_1_12:52910419-52914113:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	636.365234375	2	636.36391	1270.71327	-0.47575	-0.00030275	-0.13464	-8.5677E-05	-0.61039	-0.00038843	636.3637572240631	80.321	1.5187	77.611	77.171	78.69	-2.7106					73	30	4	0	0	0	0.087298	1	6557	6557		99.788	38.097	1	267600		+	24041	627	19666	19689	26739	26739					0.08873893566214974
KLAELEEALQK	11	Unmodified	_KLAELEEALQK_					0	0	0		ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647	ENST00000552629.5_1_12:52910419-52914113:-|nuORF	ENST00000552629.5_1_12:52910419-52914113:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	636.36391	1270.71327	-0.55617	-0.00035393	-0.43806	-0.00027876	-0.99423	-0.00063269	636.3632713521592	79.346	2.2684	77.606	76.855	79.123	-1.7398	-0.063052	1.0063E-05	NaN	99.788	89	44	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212350		+	24042	627	19666	19689							0.08873893566214974
KLAELEEALQK	11	Unmodified	_KLAELEEALQK_					0	0	0		ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647	ENST00000552629.5_1_12:52910419-52914113:-|nuORF	ENST00000552629.5_1_12:52910419-52914113:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	636.36391	1270.71327	0.20837	0.0001326	-0.86248	-0.00054885	-0.65411	-0.00041625	636.3633210640918	80.13	2.2385	77.79	77.053	79.291	-2.3399	0.12121	-0.00053011	NaN	99.788	92	43	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286700		+	24043	627	19666	19689							0.08873893566214974
KLAESKLTKD	10	Unmodified	_KLAESKLTKD_					0	0	0			REV__tr|A0A7D6ZZY0|A0A7D6ZZY0_9CLOTDUF445domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21985PE=3SV=1	REV__tr|A0A7D6ZZY0|A0A7D6ZZY0_9CLOTDUF445domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21985PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.8330078125	2	566.832246	1131.64994	0.55128	0.00031248	0.64232	0.00036409	1.1936	0.00067657	566.8324579540893	20.42	0.84666	19.081	18.851	19.697	-1.3386					29	16	2	0	0	0	0.77039	1	59	59		22.58	0.89391	1	86401	+		24044	32428	19667	19690	26740	26740					0.08937952848987152
KLAESVEKA	9	Unmodified	_KLAESVEKA_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	OvCa99_classI_Rep5	1	487.779541015625	2	487.779482	973.544411	-0.3684	-0.0001797	0.19847	9.681E-05	-0.16993	-8.289E-05	487.7793766655758	35.73	0.87615	35.73	35.475	36.351	0					37	18	4	0	0	0	0.03923	1	1831	1831		127.46	15.813	1	701480			24045	1891	19668	19691	26741	26741					0.056580367233777906
KLAFETKET	9	Unmodified	_KLAFETKET_					0	0	0			REV__nc|ENSG00000173611|Q8N9R8-2|SCAI	REV__nc|ENSG00000173611|Q8N9R8-2|SCAI	MULTI-SECPEP	OvCa9_classI_Rep3	3	534.7783813476562	2	533.792589	1065.57063	-0.12117	-6.4681E-05	1.5555	0.00083031	1.4343	0.00076562	533.794148424877	76.378	0.73184	74.006	73.721	74.453	-2.3715					21	13	2	0	0	0	0.02745	1	3901	3901		53.089	8.7118	1	25179	+		24046	29009	19669	19692	26742	26742					0.04046305894848956
KLAFPVTRRPV	11	Unmodified	_KLAFPVTRRPV_					0	0	0			REV__ENST00000518942.1_1_8:52811934-52812075:+|nuORF	REV__ENST00000518942.1_1_8:52811934-52812075:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	641.64404296875	2	642.400964	1282.78738	1.0051	0.00064569	-0.42693	-0.00027426	0.5782	0.00037143	642.4005184234012	151.79	4.0783	151.79	151.25	155.33	0					172	86	4	0	0	0	0.025344	1	18120	18120		41.427	0	1	1195300	+		24047	27036	19670	19693	26743	26743					0.15729326239079455
KLAIATALAI	10	Unmodified	_KLAIATALAI_					0	0	0		nc|ENSG00000015532|Q9H1B5-2|XYLT2;ENSG00000015532|ENST00000017003|XYLT2	nc|ENSG00000015532|Q9H1B5-2|XYLT2	nc|ENSG00000015532|Q9H1B5-2|XYLT2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.2876892089844	2	492.826235	983.637917	0.6696	0.00033	-1.2278	-0.00060507	-0.55815	-0.00027507	492.82531116885434	113.33	0.58382	111.88	111.7	112.29	-1.4461					23	11	3	0	0	0	0.026849	1	10500	10500		25.574	0	1	45656			24048	1003	19671	19694	26744	26744					0.14544380896438724
KLAIFTDDVS	10	Unmodified	_KLAIFTDDVS_					0	0	0		ENST00000566211.1_1_16:31007949-31008356:-|nuORF	ENST00000566211.1_1_16:31007949-31008356:-|nuORF	ENST00000566211.1_1_16:31007949-31008356:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.3136596679688	2	554.797872	1107.58119	0.49112	0.00027247	-0.036903	-2.0474E-05	0.45421	0.000252	554.7975560166153	64.289	1.2639	60.814	60.393	61.657	-3.475					47	25	3	0	0	0	0.027056	1	4535	4535		20.947	0.10978	1	113030			24049	13841	19672	19695	26745	26745					0.031702885492677524
KLAIILSMK	9	Unmodified	_KLAIILSMK_					0	0	0		tr|A0A553SL42|A0A553SL42_NIACIATP-dependentDNAhelicaseRecQOS=NialliacirculansOX=1397GN=CEQ21_19910PE=4SV=1	tr|A0A553SL42|A0A553SL42_NIACIATP-dependentDNAhelicaseRecQOS=NialliacirculansOX=1397GN=CEQ21_19910PE=4SV=1	tr|A0A553SL42|A0A553SL42_NIACIATP-dependentDNAhelicaseRecQOS=NialliacirculansOX=1397GN=CEQ21_19910PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.81707763671875	2	508.830463	1015.64637	-0.31106	-0.00015828	-1.5127	-0.0007697	-1.8237	-0.00092798	508.8295458795231	76.043	0.42606	73.104	73.033	73.459	-2.9389					14	8	2	0	0	0	0.027462	1	6057	6057		40.778	0	1	61221			24050	33683	19673	19696	26746	26746					0.1391761154144433
KLAKKKKR	8	Unmodified	_KLAKKKKR_					0	0	0		ENST00000509785.5_1_5:169014331-169015436:+|nuORF	ENST00000509785.5_1_5:169014331-169015436:+|nuORF	ENST00000509785.5_1_5:169014331-169015436:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.3145446777344	2	500.361111	998.707669	1.684	0.00084263	3.7658	0.0018842	5.4498	0.0027269	500.3628856438963	125.83	0.23093	125.83	125.76	125.99	0					6	4	2	0	0	0	0.028476	1	14557	14557		8.2313	3.915	1	27094			24051	12965	19674	19697	26747	26747					0.20826304355750835
KLAKLLDDM	9	Unmodified	_KLAKLLDDM_					0	0	0		tr|A0A553SQB2|A0A553SQB2_NIACIPeptidedeformylaseOS=NialliacirculansOX=1397GN=defPE=3SV=1	tr|A0A553SQB2|A0A553SQB2_NIACIPeptidedeformylaseOS=NialliacirculansOX=1397GN=defPE=3SV=1	tr|A0A553SQB2|A0A553SQB2_NIACIPeptidedeformylaseOS=NialliacirculansOX=1397GN=defPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2689819335938	2	523.79936	1045.58417	0.070026	3.6679E-05	-1.5202	-0.00079628	-1.4502	-0.0007596	523.7988370958257	45.75	0.35506	45.75	45.624	45.979	0					11	7	2	0	0	0	0.027441	1	3185	3185		58.782	7.4465	1	79543			24052	34140	19675	19698	26748	26748					0.06319840402443333
KLAKLQAQV	9	Unmodified	_KLAKLQAQV_					0	0	0		ENSG00000134717|ENST00000313334|BTF3L4;nc|ENSG00000134717|Q96K17-3|BTF3L4;ENST00000524414.5_1_1:52521992-52530613:+|nuORF;ENST00000533836.1_1_1:52522019-52536962:+|nuORF;ENSG00000145741|ENST00000380591|BTF3;nc|ENSG00000145741|P20290-2|BTF3;ENST00000510787.5_1_5:72794492-72798477:+|nuORF	ENSG00000134717|ENST00000313334|BTF3L4;ENSG00000145741|ENST00000380591|BTF3	ENSG00000145741|ENST00000380591|BTF3	MULTI-MSMS	OvCa99_classI_Rep5	1	499.82269287109375	2	499.821484	997.628415	-0.45846	-0.00022915	0.19966	9.9792E-05	-0.25881	-0.00012936	499.8214208867064	50.885	1.243	50.885	50.465	51.708	0					64	28	4	0	0	0	0.019428	1	3880	3880		147.69	53.687	1	4960100			24053	5243;4321	19676	19699	26749	26749					0.1295061261095043
KLAKSVRVI	9	Unmodified	_KLAKSVRVI_					0	0	0			REV__tr|A0A7D6W488|A0A7D6W488_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17835PE=4SV=1	REV__tr|A0A7D6W488|A0A7D6W488_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17835PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3261413574219	2	507.345126	1012.6757	0.079195	4.0179E-05	-0.92522	-0.00046941	-0.84603	-0.00042923	507.3443491495212	31.797	0.29811	31.797	31.658	31.956	0					12	5	3	0	0	0	0.027462	1	1349	1349		23.042	0	1	104050	+		24054	31936	19677	19700	26750	26750					0.16986891881936117
KLALQFLEPK	10	Unmodified	_KLALQFLEPK_					0	0	0			REV__ENSG00000126773|ENST00000406854|PCNX4	REV__ENSG00000126773|ENST00000406854|PCNX4	MULTI-SECPEP	OvCa9_classI_Rep3	3	594.8278198242188	2	593.863349	1185.71214	-0.76745	-0.00045576	-3.1313	-0.0018595	-3.8987	-0.0023153	593.8614597762418	76.83	0.94083	74.458	74.243	75.184	-2.3715					28	17	2	0	0	0	0.026681	1	3984	3984		52.937	5.2794	1	50364	+		24055	18793	19678	19701	26751	26751					0.12671723987978112
KLALQFLEPK	10	Unmodified	_KLALQFLEPK_					0	0	0			REV__ENSG00000126773|ENST00000406854|PCNX4	REV__ENSG00000126773|ENST00000406854|PCNX4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	593.863349	1185.71214	-1.1079	-0.00065793	-3.0325	-0.0018009	-4.1404	-0.0024589	593.8614900875273	76.062	0.63091	74.208	73.887	74.518	-1.854	-0.20071	0.00021294	NaN	52.937	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36439	+		24056	18793	19678	19701							0.12671723987978112
KLALRQQL	8	Unmodified	_KLALRQQL_					0	0	0		nc|ENSG00000160207|O75031-2|HSF2BP;ENSG00000160207|ENST00000291560|HSF2BP	nc|ENSG00000160207|O75031-2|HSF2BP	nc|ENSG00000160207|O75031-2|HSF2BP	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.3150329589844	2	485.313826	968.613099	-0.15198	-7.3759E-05	0.17666	8.5733E-05	0.024672	1.1974E-05	485.31380783470445	65.158	1.2591	61.673	61.358	62.617	-3.4854					62	25	4	0	0	0	0.65062	1	4666	4666		53.351	2.016	1	648390			24057	6046	19679	19702	26752	26752					0.12753745813745354
KLALTWVR	8	Unmodified	_KLALTWVR_					0	0	0		ENST00000240487.5_2_4:154514988-154517473:+|nuORF	ENST00000240487.5_2_4:154514988-154517473:+|nuORF	ENST00000240487.5_2_4:154514988-154517473:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.78582763671875	2	493.810919	985.607286	-0.81245	-0.0004012	0.23683	0.00011695	-0.57562	-0.00028425	493.8116398486208	42.269	0.29758	39.288	39.216	39.513	-2.9804					9	5	2	0	0	0	0.028476	1	1970	1970		58.782	0	1	20270			24058	9760	19680	19703	26753	26753					0.11390647302084744
KLAMLSGILL	10	Unmodified	_KLAMLSGILL_					0	0	0		ENSG00000136261|ENST00000258761|BZW2;nc|ENSG00000136261|Q9Y6E2-2|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-MSMS	OvCa9_classI_Rep2	2	529.8336181640625	2	529.835746	1057.65694	0.11225	5.9476E-05	-3.2479	-0.0017209	-3.1357	-0.0016614	529.8337068183537	130.71	1.0441	130.48	130.26	131.3	-0.22697					31	20	3	0	0	0	0.49049	1	12868	12868		55.504	9.5523	1	147740			24059	4478	19681	19704	26754	26754					0.13041594195897233
KLAPFLLTL	9	Unmodified	_KLAPFLLTL_					0	0	0			REV__tr|A0A7D6VT57|A0A7D6VT57_9CLOTPutativeABCexporterdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09330PE=4SV=1	REV__tr|A0A7D6VT57|A0A7D6VT57_9CLOTPutativeABCexporterdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09330PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.3030700683594	2	508.331153	1014.64775	-1.2645	-0.00064279	4.3074	0.0021896	3.0429	0.0015468	508.8361205606413	82.41	0.34336	80.114	79.988	80.332	-2.2963					9	6	2	0	0	0	0.027462	1	4657	4657		23.042	10.836	1	14119	+		24060	31574	19682	19705	26755	26755					0.141015689018559
KLAPKDVKI	9	Unmodified	_KLAPKDVKI_					0	0	0		ENST00000470322.5_1_10:104240622-104242055:-|nuORF;ENSG00000138107|ENST00000369905|ACTR1A	ENST00000470322.5_1_10:104240622-104242055:-|nuORF	ENST00000470322.5_1_10:104240622-104242055:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	506.3317565917969	2	506.331685	1010.64882	-0.20269	-0.00010263	0.13769	6.9717E-05	-0.064996	-3.291E-05	506.3315327435284	47.315	0.51715	47.315	47.121	47.638	0					28	11	3	0	0	0	0.1804	1	3403	3403		79.713	2.395	1	827360			24061	4659	19683	19706	26756	26756					0.14391783270752967
KLAPPLVTL	9	Unmodified	_KLAPPLVTL_					0	0	0		AP1B1|p.T737Rfs*121|1|0.13|ENSG00000100280|chr22:29334369-29334370|-/CCCA|frameshift_variant;AP1B1|p.G736Afs*18|1|0.18|ENSG00000100280|chr22:29334367-29334368|-/TACCG|frameshift_variant;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000441188.2_1_X:92478653-92479352:-|nuORF;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1	AP1B1|p.T737Rfs*121|1|0.13|ENSG00000100280|chr22:29334369-29334370|-/CCCA|frameshift_variant;nc|ENSG00000006125|P63010-3|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	MULTI-MSMS	OvCa99_classI_Rep5	1	476.31658935546875	2	476.315503	950.616454	2.7907	0.0013293	-0.88067	-0.00041947	1.9101	0.00090979	476.31488525721954	107.92	0.37968	107.92	107.65	108.03	0					27	8	4	0	0	0	0.068524	1	12176	12176		108.09	17.311	1	4194000			24062	97;872	19684	19707	26757	26757					0.13916995867759852
KLAPPPKKA	9	Unmodified	_KLAPPPKKA_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	OvCa99_classI_Rep5	1	475.3132019042969	2	475.313295	948.612037	-0.75754	-0.00036007	0.45452	0.00021604	-0.30302	-0.00014403	475.3134050294386	28.115	0.64723	28.115	27.941	28.588	0					22	12	2	0	0	0	0.33652	1	887	887		58.782	18.209	1	687290			24063	6223	19685	19708	26758	26758					0.1356753144484628
KLAQPKVSTD	10	Unmodified	_KLAQPKVSTD_					0	0	0			REV__ENST00000488519.1_1_9:130825709-130828462:-|nuORF	REV__ENST00000488519.1_1_9:130825709-130828462:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.83251953125	2	543.811313	1085.60807	-0.53483	-0.00029085	-0.69371	-0.00037724	-1.2285	-0.00066809	543.8115600632219	36.007	0.59685	36.007	35.846	36.442	0					24	12	3	0	0	0	0.026826	1	1914	1914		36.447	10.873	1	337580	+		24064	21600	19686	19709	26759	26759					0.06869397160471635
KLAQQVRE	8	Unmodified	_KLAQQVRE_					0	0	0		ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.2974853515625	2	486.285266	970.555979	0.16594	8.0693E-05	-0.24579	-0.00011953	-0.079857	-3.8833E-05	486.2849397707017	38.797	1.2901	35.87	35.651	36.941	-2.9264					44	25	3	0	0	0	0.028476	1	1652	1652		68.787	18.762	1	193480			24065	4193	19687	19710	26760	26760					0.06952278537380607
KLAQQVRE	8	Unmodified	_KLAQQVRE_					0	0	0		ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	486.285266	970.555979	-1.0417	-0.00050658	0.9684	0.00047092	-0.073325	-3.5657E-05	486.2854823916972	38.797	0.93958	36.087	35.865	36.805	-2.7097	0.1082	0.00074756	NaN	68.787	27	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54233			24066	4193	19687	19710							0.06952278537380607
KLARHLREAL	10	Unmodified	_KLARHLREAL_					0	0	0			REV__ENST00000505805.1_1_4:79518453-79531266:+|nuORF	REV__ENST00000505805.1_1_4:79518453-79531266:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.928955078125	3	402.919168	1205.73567	0.90909	0.00036629	-4.4001	-0.0017729	-3.491	-0.0014066	402.91723263485795	51.69	0.20214	51.69	51.627	51.829	0					5	4	2	0	0	0	0.026843	1	4024	4024		38.754	8.1847	1	170480	+		24067	19571	19688	19711	26761	26761					0.14103582545203608
KLATLSVRAM	10	Unmodified	_KLATLSVRAM_					0	0	0		ENSG00000140598|ENST00000268206|EFL1;nc|ENSG00000140598|Q7Z2Z2-2|EFL1	ENSG00000140598|ENST00000268206|EFL1	ENSG00000140598|ENST00000268206|EFL1	MULTI-SECPEP	OvCa9_classI_Rep2	2	546.2987670898438	2	545.326076	1088.6376	0.074399	4.0572E-05	-4.2148	-0.0022984	-4.1404	-0.0022578	545.3238921306196	72.265	1.6717	69.757	69.485	71.157	-2.5071					69	31	4	0	0	0	0.026994	1	5814	5814		25.574	14.063	1	187840			24068	4864	19689	19712	26762	26762					0.09682637904961666
KLCSFHSI	8	Unmodified	_KLCSFHSI_					0	0	0			REV__ENSG00000236637|ENST00000421715|IFNA4	REV__ENSG00000236637|ENST00000421715|IFNA4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	468.2704162597656	2	467.744388	933.474223	0.86209	0.00040324	1.3858	0.00064822	2.2479	0.0010515	467.7451524574193	68.306	0.8354	64.816	64.526	65.362	-3.4902					20	16	2	0	0	0	0.028476	1	5099	5099		21.96	0	1	47721	+		24069	20087	19690	19713	26763	26763					0.00482459853913042
KLCVLRLL	8	Unmodified	_KLCVLRLL_					0	0	0			REV__nc|ENSG00000258388|Q9UMR5-2|PPT2	REV__nc|ENSG00000258388|Q9UMR5-2|PPT2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.2729797363281	2	479.317523	956.620493	-1.0453	-0.00050102	-2.7824	-0.0013336	-3.8277	-0.0018347	479.3160691483869	95.397	0.95499	92.928	92.611	93.566	-2.4685					33	18	3	0	0	0	0.028476	1	8429	8429		19.36	6.4008	1	47165	+		24070	29178	19691	19714	26764	26764					0.14044762089804408
KLDAKQEIR	9	Unmodified	_KLDAKQEIR_					0	0	0			REV__ENST00000522063.1_1_8:27957393-27970048:+|nuORF	REV__ENST00000522063.1_1_8:27957393-27970048:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.290283203125	2	550.824755	1099.63496	-0.42722	-0.00023532	-0.68591	-0.00037782	-1.1131	-0.00061314	550.8242975583843	65.301	0.58076	61.816	61.647	62.227	-3.4854					19	11	2	0	0	0	0.027462	1	4735	4735		25.574	4.6271	1	110340	+		24071	27080	19692	19715	26765	26765					0.08912505771650103
KLDAKQEIR	9	Unmodified	_KLDAKQEIR_					0	0	0			REV__ENST00000522063.1_1_8:27957393-27970048:+|nuORF	REV__ENST00000522063.1_1_8:27957393-27970048:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	550.824755	1099.63496	-0.81536	-0.00044912	-0.23425	-0.00012903	-1.0496	-0.00057815	550.8244458472401	61.507	0.37551	61.507	61.289	61.665	0	-0.17747	0.00052149	NaN	25.574	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	420730	+		24072	27080	19692	19715							0.08912505771650103
KLDAKQEIR	9	Unmodified	_KLDAKQEIR_					0	0	0			REV__ENST00000522063.1_1_8:27957393-27970048:+|nuORF	REV__ENST00000522063.1_1_8:27957393-27970048:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	550.824755	1099.63496	0.33216	0.00018296	-0.99481	-0.00054796	-0.66265	-0.000365	550.8243834033758	64.456	0.47725	61.731	61.493	61.97	-2.7245	0.046338	-0.00031638	NaN	25.574	16	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63340	+		24073	27080	19692	19715							0.08912505771650103
KLDCHIIKNK	10	Unmodified	_KLDCHIIKNK_					0	0	0			REV__nc|ENSG00000143479|O43781-2|DYRK3	REV__nc|ENSG00000143479|O43781-2|DYRK3	MULTI-MSMS	OvCa9_classI_Rep2	2	404.57086181640625	3	404.569147	1210.68561	0.36741	0.00014864	2.9346	0.0011873	3.302	0.0013359	404.5702198985251	49.813	1.7345	47.045	46.614	48.348	-2.768					90	34	4	0	0	0	0.50873	1	3187	3187		53.089	13.031	1	257950	+		24074	19845	19693	19716	26766	26766					0.088697118249911
KLDCHIIKNK	10	Unmodified	_KLDCHIIKNK_					0	0	0			REV__nc|ENSG00000143479|O43781-2|DYRK3	REV__nc|ENSG00000143479|O43781-2|DYRK3	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		3	404.569147	1210.68561	0.11746	4.7522E-05	2.8908	0.0011695	3.0083	0.0012171	404.5702897954673	50.253	1.4365	47.112	46.82	48.256	-3.1416	0.033179	-3.8471E-05	NaN	53.089	73	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	331320	+		24075	19845	19693	19716							0.088697118249911
KLDDKMREL	9	Unmodified	_KLDDKMREL_					0	0	0		tr|A0A553SU69|A0A553SU69_NIACICarboxymuconolactonedecarboxylasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_06445PE=4SV=1	tr|A0A553SU69|A0A553SU69_NIACICarboxymuconolactonedecarboxylasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_06445PE=4SV=1	tr|A0A553SU69|A0A553SU69_NIACICarboxymuconolactonedecarboxylasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_06445PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	574.311279296875	2	574.310623	1146.60669	-0.89181	-0.00051218	-2.7609	-0.0015856	-3.6527	-0.0020978	574.3090246281425	127.75	2.9616	126.31	125.99	128.95	-1.4357					168	58	5	0	0	0	0.44248	1	12332	12332		47.96	6.8795	1	3385000			24076	34575	19694	19717	26767	26767					0.03925439800082131
KLDEELKNK	9	Unmodified	_KLDEELKNK_					0	0	0		nc|ENSG00000156256|Q9Y5T5-3|USP16;nc|ENSG00000156256|Q9Y5T5-2|USP16;ENSG00000156256|ENST00000399976|USP16;nc|ENSG00000156256|Q9Y5T5-4|USP16;nc|ENSG00000156256|Q9Y5T5-5|USP16;ENST00000474835.5_1_21:30400234-30414894:+|nuORF	nc|ENSG00000156256|Q9Y5T5-3|USP16	nc|ENSG00000156256|Q9Y5T5-3|USP16	MULTI-MSMS	OvCa99_classI_Rep5	1	558.8141479492188	2	558.816596	1115.61864	-0.081134	-4.5339E-05	-3.1161	-0.0017413	-3.1972	-0.0017866	558.8148308727776	29.131	0.69894	29.131	28.937	29.636	0					40	13	5	0	0	0	0.55011	1	1015	1015		37.812	0	1	233000			24077	5829	19695	19718	26768	26768					0.06545379814906482
KLDEILELL	9	Unmodified	_KLDEILELL_					0	0	0			REV__ENSG00000132467|ENST00000254803|UTP3	REV__ENSG00000132467|ENST00000254803|UTP3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.3712768554688	2	543.326265	1084.63798	-1.3704	-0.0007446	-1.6576	-0.0009006	-3.028	-0.0016452	543.3252351365168	40.769	1.1472	37.815	37.421	38.569	-2.9541					50	21	3	0	0	0	0.027279	1	1811	1811		60.972	0	1	103980	+		24078	19081	19696	19719	26769	26769					0.09904336105796574
KLDEWHEHTAF	11	Unmodified	_KLDEWHEHTAF_					0	0	0		ENSG00000180917|ENST00000434935|CMTR2	ENSG00000180917|ENST00000434935|CMTR2	ENSG00000180917|ENST00000434935|CMTR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.2882385253906	3	471.557964	1411.65206	0.35861	0.00016911	-0.20423	-9.6306E-05	0.15438	7.28E-05	471.5575458555389	71.867	0.37637	71.867	71.668	72.045	0					21	8	4	0	0	0	0.025818	1	6964	6964		23.378	0	1	505230			24079	7899	19697	19720	26770	26770					-0.037296184131946575
KLDFDCIVD	9	Carbamidomethyl (C)	_KLDFDC(Carbamidomethyl (C))IVD_	KLDFDC(1)IVD		KLDFDC(66)IVD		0	1	0		tr|A0A7D6ZFT1|A0A7D6ZFT1_9CLOTIg-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19200PE=4SV=1	tr|A0A7D6ZFT1|A0A7D6ZFT1_9CLOTIg-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19200PE=4SV=1	tr|A0A7D6ZFT1|A0A7D6ZFT1_9CLOTIg-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19200PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	562.7662963867188	2	562.768257	1123.52196	0.060279	3.3923E-05	-3.716	-0.0020913	-3.6557	-0.0020573	562.7660370416633	41.626	6.1897	41.626	40.795	46.985	0					363	141	3	0	0	0	0.27001	1	2639	2639		66.429	15.094	1	1452500			24080	35523	19698	19721	26771	26771	389				-0.034859307365422865
KLDGFRVLCL	10	Carbamidomethyl (C)	_KLDGFRVLC(Carbamidomethyl (C))L_	KLDGFRVLC(1)L		KLDGFRVLC(53)L		0	1	0			REV__ENST00000583908.1_1_17:80442656-80446105:+|nuORF	REV__ENST00000583908.1_1_17:80442656-80446105:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	407.56585693359375	3	407.565514	1219.67471	1.3418	0.00054686	-3.9204	-0.0015978	-2.5786	-0.0010509	407.5638708080846	57.415	0.89067	57.415	57.221	58.112	0					49	20	4	0	0	0	0.50873	1	4820	4820		53.089	11.662	1	3470900	+		24081	27797	19699	19722	26772	26772	342				0.07366309450731023
KLDGVASATI	10	Unmodified	_KLDGVASATI_					0	0	0		tr|A0A553SF65|A0A553SF65_NIACIEffluxRNDtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08280PE=4SV=1	tr|A0A553SF65|A0A553SF65_NIACIEffluxRNDtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08280PE=4SV=1	tr|A0A553SF65|A0A553SF65_NIACIEffluxRNDtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08280PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	488.77166748046875	2	487.779482	973.544411	-0.9324	-0.00045481	0.32943	0.00016069	-0.60297	-0.00029412	487.7797775046883	66.008	0.92048	62.523	61.987	62.907	-3.4854					51	18	4	0	0	0	0.026826	1	4714	4714		44.377	12.422	1	381420			24082	32996	19700	19723	26773	26773					0.056580367233777906
KLDGVASATI	10	Unmodified	_KLDGVASATI_					0	0	0		tr|A0A553SF65|A0A553SF65_NIACIEffluxRNDtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08280PE=4SV=1	tr|A0A553SF65|A0A553SF65_NIACIEffluxRNDtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08280PE=4SV=1	tr|A0A553SF65|A0A553SF65_NIACIEffluxRNDtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08280PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	487.779482	973.544411	1.1473	0.00055965	-1.3719	-0.00066919	-0.22458	-0.00010954	487.7787583658523	65.371	0.81238	62.664	62.198	63.011	-2.7071	0.070482	-0.0004684	NaN	60.118	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70911			24083	32996	19700	19723							0.056580367233777906
KLDHDLSLDR	10	Unmodified	_KLDHDLSLDR_					0	0	0		DMXL2|p.P2585Efs*17|1|0.03|ENSG00000104093|chr15:51464727-51464728|-/CTGAGATTGCACCACTGCTC|frameshift_variant;DMXL2|p.P2585Lfs*7|1|0.03|ENSG00000104093|chr15:51464726-51464727|-/A|frameshift_variant;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;nc|ENSG00000104093|Q8TDJ6-2|DMXL2	DMXL2|p.P2585Efs*17|1|0.03|ENSG00000104093|chr15:51464727-51464728|-/CTGAGATTGCACCACTGCTC|frameshift_variant;nc|ENSG00000104093|Q8TDJ6|DMXL2	nc|ENSG00000104093|Q8TDJ6|DMXL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.8994140625	3	404.55081	1210.6306	0.93831	0.00037959	0.47932	0.00019391	1.4176	0.0005735	404.5510101190171	40.578	0.76899	40.578	40.2	40.969	0					31	16	3	0	0	0	0.027062	1	2512	2512		26.063	6.0329	1	134640			24084	2352;744	19701	19724	26774	26774					0.03370996558101069
KLDIELYH	8	Unmodified	_KLDIELYH_					0	0	0		tr|A0A553SNN7|A0A553SNN7_NIACISulfotransferaseOS=NialliacirculansOX=1397GN=CEQ21_24845PE=4SV=1	tr|A0A553SNN7|A0A553SNN7_NIACISulfotransferaseOS=NialliacirculansOX=1397GN=CEQ21_24845PE=4SV=1	tr|A0A553SNN7|A0A553SNN7_NIACISulfotransferaseOS=NialliacirculansOX=1397GN=CEQ21_24845PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.3458251953125	2	515.782025	1029.5495	-0.90905	-0.00046887	-1.9492	-0.0010054	-2.8582	-0.0014742	515.7805871663463	68.143	0.43981	68.143	67.916	68.356	0					18	10	2	0	0	0	0.028476	1	6424	6424		38.806	0	1	674000			24085	33940	19702	19725	26775	26775					0.035903405860153725
KLDIIPQYL	9	Unmodified	_KLDIIPQYL_					0	0	0			REV__tr|A0A7D6VNU3|A0A7D6VNU3_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14045PE=4SV=1	REV__tr|A0A7D6VNU3|A0A7D6VNU3_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14045PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	550.829833984375	2	551.828975	1101.6434	-0.80976	-0.00044685	0.4228	0.00023331	-0.38696	-0.00021354	551.8290647907521	34.248	0.59343	31.538	31.316	31.91	-2.7097					17	11	2	0	0	0	0.027462	1	1314	1314		30.504	2.6214	1	44713	+		24086	31204	19703	19726	26776	26776					0.09664059688270754
KLDIVRLD	8	Unmodified	_KLDIVRLD_					0	0	0			REV__ENSG00000137776|ENST00000380516|SLTM	REV__ENSG00000137776|ENST00000380516|SLTM	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.2974853515625	2	486.297842	970.581131	-0.26833	-0.00013049	-0.32722	-0.00015913	-0.59555	-0.00028962	486.29756122474794	39.644	1.3717	36.69	36.417	37.789	-2.9541					48	26	2	0	0	0	0.57734	1	1652	1652		68.787	0	1	381690	+		24087	19476	19704	19727	26777	26777					0.09466333339935318
KLDKKYLMG	9	Unmodified	_KLDKKYLMG_					0	0	0		tr|A0A7D6VXH4|A0A7D6VXH4_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12060PE=4SV=1	tr|A0A7D6VXH4|A0A7D6VXH4_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12060PE=4SV=1	tr|A0A7D6VXH4|A0A7D6VXH4_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12060PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	547.8424682617188	2	548.315177	1094.6158	-0.21407	-0.00011738	-4.1354	-0.0022675	-4.3495	-0.0023849	548.3128387442573	71.955	0.63956	69.352	68.882	69.521	-2.6023					19	12	2	0	0	0	0.027462	1	3341	3341		23.042	8.9054	1	58998			24088	35282	19705	19728	26778	26778					0.07227833156366614
KLDKLLIII	9	Unmodified	_KLDKLLIII_					0	0	0		nc|ENSG00000163946|Q9UK61-2|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR;ENST00000459993.5_1_3:56657067-56667992:-|nuORF	nc|ENSG00000163946|Q9UK61-2|TASOR	nc|ENSG00000163946|Q9UK61-2|TASOR	MULTI-MSMS	OvCa99_classI_Rep5	1	534.8743286132812	2	534.873185	1067.73182	1.4558	0.00077865	0.090798	4.8566E-05	1.5466	0.00082722	534.8730876845476	124.86	1.3861	124.86	124.56	125.95	0					71	32	4	0	0	0	0.075543	1	14404	14404		104.06	5.4274	1	2277100			24089	6384	19706	19729	26779	26779					0.20066099998757636
KLDKPLTV	8	Unmodified	_KLDKPLTV_					0	0	0		FAT3|p.R2620Pfs*14|1|0.65|ENSG00000165323|chr11:92801322-92801322|G/-|frameshift_variant	FAT3|p.R2620Pfs*14|1|0.65|ENSG00000165323|chr11:92801322-92801322|G/-|frameshift_variant	FAT3|p.R2620Pfs*14|1|0.65|ENSG00000165323|chr11:92801322-92801322|G/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	457.2906799316406	2	457.289485	912.564418	0.99148	0.00045339	1.428	0.000653	2.4195	0.0011064	457.28999347617025	141.89	2.9183	141.89	141.44	144.35	0					112	58	3	0	0	0	0.6345	1	16624	16624		56.721	1.2168	1	466050			24090	14324	19707	19730	26780	26780					0.10463832453990562
KLDKSFAN	8	Unmodified	_KLDKSFAN_					0	0	0			REV__ENST00000315792.4_1_8:40011447-40011744:+|nuORF	REV__ENST00000315792.4_1_8:40011447-40011744:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	461.7514343261719	2	461.753267	921.491981	-0.28675	-0.00013241	-3.1363	-0.0014482	-3.423	-0.0015806	461.7516788238596	23.472	1.6452	23.472	23.042	24.687	0					43	32	2	0	0	0	0.72896	1	331	331		37.159	1.5408	1	80135	+		24091	24401	19708	19731	26781	26781					0.028094983804294316
KLDLNDKHCL	10	Unmodified	_KLDLNDKHCL_					0	0	0			REV__ENSG00000171467|ENST00000361428|ZNF318	REV__ENSG00000171467|ENST00000361428|ZNF318	MULTI-MSMS	OvCa99_classI_Rep5	1	599.8200073242188	2	599.816073	1197.61759	2.6414	0.0015844	4.3351	0.0026003	6.9765	0.0041846	599.8185631715913	106.34	1.3473	106.34	105.97	107.31	0					92	30	7	0	0	0	0.6079	1	11951	11951		44.377	5.1244	1	10769000	+		24092	21615	19709	19732	26782	26782					0.026688421743756408
KLDLRMKI	8	Unmodified	_KLDLRMKI_					0	0	0		nc|ENSG00000140265|Q8IWY8-3|ZSCAN29	nc|ENSG00000140265|Q8IWY8-3|ZSCAN29	nc|ENSG00000140265|Q8IWY8-3|ZSCAN29	MULTI-MSMS	OvCa99_classI_Rep5	1	508.8175048828125	2	508.817887	1015.62122	0.10092	5.1348E-05	-0.65044	-0.00033096	-0.54953	-0.00027961	508.81749713659383	32.176	0.4472	32.176	31.956	32.403	0					25	8	4	0	0	0	0.27528	1	1375	1375		111.65	12.273	1	1585000			24093	15053	19710	19733	26783	26783					0.11403556738866882
KLDNTLVKI	9	Unmodified	_KLDNTLVKI_					0	0	0		tr|A0A7D7A152|A0A7D7A152_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06195PE=3SV=1	tr|A0A7D7A152|A0A7D7A152_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06195PE=3SV=1	tr|A0A7D7A152|A0A7D7A152_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06195PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.3057861328125	2	522.326599	1042.63865	-0.68644	-0.00035854	2.2872	0.0011947	1.6008	0.00083611	522.327805264497	53.017	0.78062	53.017	52.828	53.609	0					30	17	3	0	0	0	0.027453	1	4246	4246		37.812	0	1	585160			24094	36025	19711	19734	26784	26784					0.11903175545535305
KLDPTKTTL	9	Unmodified	_KLDPTKTTL_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;E2F5-NDRG1|1|fusion;ENST00000522665.5_1_8:134254200-134261004:-|nuORF;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.8043518066406	2	508.802957	1015.59136	-0.34108	-0.00017354	-0.25216	-0.0001283	-0.59323	-0.00030184	508.80276819799974	55.913	1.5383	55.913	55.599	57.138	0					68	35	3	0	0	0	0.040625	2	4619	4590;4619		126.24	30.052	1	7537600			24095	771	19712	19735	26785;26786	26786					0.08418896274520193
KLDPTKTTL	9	Unmodified	_KLDPTKTTL_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;E2F5-NDRG1|1|fusion;ENST00000522665.5_1_8:134254200-134261004:-|nuORF;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	OvCa9_classI_Rep2	2	508.8018798828125	2	508.802957	1015.59136	-0.75072	-0.00038197	0.097557	4.9637E-05	-0.65316	-0.00033233	508.8029903488253	59.983	1.0415	57.213	56.725	57.766	-2.7702					57	19	4	0	0	0	0.017173	3	4404	4399;4404;4410		150.36	42.274	1	507220			24096	771	19712	19735	26787;26788;26789	26788					0.08418896274520193
KLDPTKTTL	9	Unmodified	_KLDPTKTTL_					0	0	0		nc|ENSG00000104419|Q92597-3|NDRG1;nc|ENSG00000104419|Q92597-2|NDRG1;ENSG00000104419|ENST00000323851|NDRG1;E2F5-NDRG1|1|fusion;ENST00000522665.5_1_8:134254200-134261004:-|nuORF;ENST00000519278.5_1_8:134251123-134266883:-|nuORF	nc|ENSG00000104419|Q92597-3|NDRG1	nc|ENSG00000104419|Q92597-3|NDRG1	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.803466796875	2	508.802957	1015.59136	0.036215	1.8426E-05	-0.60031	-0.00030544	-0.5641	-0.00028701	508.8026507301303	60.634	1.1925	57.204	56.799	57.991	-3.43					81	23	5	0	0	0	0.027568	5	4112	4100;4112;4124;4137;4150		138.06	33.254	1	2005300			24097	771	19712	19735	26790;26791;26792;26793;26794	26791					0.08418896274520193
KLDQDLNEV	9	Unmodified	_KLDQDLNEV_					0	0	0		ENSG00000108055|ENST00000361804|SMC3;SMC3|p.D489Ifs*18|1|0.47|ENSG00000108055|chr10:110589947-110589947|G/-|frameshift_variant;SMC3|p.A694Dfs*32|1|0.21|ENSG00000108055|chr10:110596514-110596515|-/ATTTTATCTTTGAAATCCAGGTTAAGAACCTC|frameshift_variant;SMC3|p.Q813Vfs*4|1|0.44|ENSG00000108055|chr10:110600447-110600448|AC/-|frameshift_variant	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MSMS	OvCa99_classI_Rep5	1	537.2789916992188	2	537.277303	1072.54005	-0.54097	-0.00029065	0.189	0.00010154	-0.35198	-0.00018911	537.2772628856814	68.297	0.73801	68.297	68.077	68.815	0					38	17	3	0	0	0	0.013371	1	6438	6438		158.07	23.264	1	4947600			24098	2636	19713	19736	26795	26795					0.006685275098107013
KLDQGSQLQE	10	Unmodified	_KLDQGSQLQE_					0	0	0			REV__ENST00000498682.2_3_7:150105369-150107277:+|nuORF	REV__ENST00000498682.2_3_7:150105369-150107277:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.3390502929688	2	573.293485	1144.57242	-0.17966	-0.000103	-1.9515	-0.0011188	-2.1311	-0.0012218	573.2928027753138	71.754	0.40372	71.754	71.389	71.792	0					14	9	2	0	0	0	0.026867	1	6904	6904		35.152	0	1	157110	+		24099	26799	19714	19737	26796	26796					0.005913149127991346
KLDQVIIHV	9	Unmodified	_KLDQVIIHV_					0	0	0		nc|ENSG00000135838|Q9BXD5-4|NPL;nc|ENSG00000135838|Q9BXD5-3|NPL;ENSG00000135838|ENST00000367553|NPL	nc|ENSG00000135838|Q9BXD5-4|NPL	nc|ENSG00000135838|Q9BXD5-4|NPL	MULTI-MSMS	OvCa99_classI_Rep5	1	532.828369140625	2	532.826766	1063.63898	1.0978	0.00058491	0.61814	0.00032936	1.7159	0.00091427	532.8269637743412	83.296	1.1002	83.296	83.035	84.135	0					59	25	4	0	0	0	0.019133	2	8647	8647;8668		148.04	51.853	1	6442000			24100	4422	19715	19738	26797;26798	26797					0.1097059526537123
KLDRYVVF	8	Unmodified	_KLDRYVVF_					0	0	0			REV__ENSG00000100077|ENST00000324198|GRK3;REV__ENST00000416281.6_1_11:67048455-67049666:+|nuORF	REV__ENSG00000100077|ENST00000324198|GRK3	MULTI-MSMS	OvCa99_classI_Rep5	1	520.3014526367188	2	520.300384	1038.58622	1.6456	0.00085622	0.075597	3.9333E-05	1.7212	0.00089555	520.300435505088	110.62	2.2117	110.62	110.27	112.48	0					91	48	2	0	0	0	0.56195	1	12587	12587		71.296	5.4925	1	11543000	+		24101	17360;25545	19716	19739	26799	26799					0.06846637202556849
KLDSTPLKA	9	Unmodified	_KLDSTPLKA_					0	0	0		ENSG00000186625|ENST00000367411|KATNA1;nc|ENSG00000186625|O75449-2|KATNA1	ENSG00000186625|ENST00000367411|KATNA1	ENSG00000186625|ENST00000367411|KATNA1	MULTI-MSMS	OvCa99_classI_Rep5	1	486.7900085449219	2	486.78985	971.565146	-0.32843	-0.00015987	-0.16952	-8.2523E-05	-0.49795	-0.0002424	486.789706136483	47.442	1.1276	47.442	47.165	48.292	0					57	25	4	0	0	0	0.030867	1	3406	3406		134.77	19.272	1	3765700			24102	8349	19717	19740	26800	26800					0.07822627103041668
KLDTLAKDI	9	Unmodified	_KLDTLAKDI_					0	0	0		tr|A0A7D7AB36|A0A7D7AB36_9CLOTSugarkinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13815PE=3SV=1	tr|A0A7D7AB36|A0A7D7AB36_9CLOTSugarkinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13815PE=3SV=1	tr|A0A7D7AB36|A0A7D7AB36_9CLOTSugarkinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13815PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	508.8017578125	2	508.802957	1015.59136	-0.75072	-0.00038197	0.097557	4.9637E-05	-0.65316	-0.00033233	508.8029903488253	59.983	1.0415	57.213	56.725	57.766	-2.7702					57	19	4	0	0	0	0.26076	1	4423	4423		67.494	0	1	507220			24103	36213	19718	19741	26801	26801					0.08418896274520193
KLEARIKEL	9	Unmodified	_KLEARIKEL_					0	0	0		nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.2955932617188	2	550.345323	1098.67609	-0.91697	-0.00050465	1.3513	0.0007437	0.43437	0.00023905	550.3461375407092	81.41	0.68527	78.7	78.396	79.081	-2.7106					22	13	2	0	0	0	0.027185	1	6670	6670		93.195	5.4412	1	46921			24104	14857	19719	19742	26802	26802					0.1307026681113257
KLEARIKEL	9	Unmodified	_KLEARIKEL_					0	0	0		nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	MULTI-MATCH	OvCa9_classI_Rep2	2		2	550.345323	1098.67609	0.82272	0.00045278	-1.714	-0.00094331	-0.89132	-0.00049053	550.3447121154837	80.585	0.65008	78.89	78.618	79.269	-1.6951	0.015764	-0.0025607	NaN	93.195	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35685			24105	14857	19719	19742							0.1307026681113257
KLEARIKEL	9	Unmodified	_KLEARIKEL_					0	0	0		nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	MULTI-MATCH	OvCa9_classI_Rep3	3		2	550.345323	1098.67609	-0.89566	-0.00049292	1.6921	0.00093125	0.79646	0.00043833	550.3462276364442	81.355	1.0126	79.032	78.645	79.658	-2.3226	0.1582	0.0011885	NaN	93.195	30	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40691			24106	14857	19719	19742							0.1307026681113257
KLEAVKHN	8	Unmodified	_KLEAVKHN_					0	0	0		ENSG00000154262|ENST00000284425|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	MULTI-SECPEP	OvCa99_classI_Rep5	1	468.7852783203125	2	469.774534	937.534515	-0.068376	-3.2121E-05	0.19857	9.3282E-05	0.13019	6.1161E-05	469.77441961860626	47.283	0.69344	47.283	47.03	47.724	0					34	15	4	0	0	0	0.028476	1	3437	3437		21.96	3.6355	1	561470			24107	5724	19720	19743	26803	26803					0.0632489350865626
KLEDDIVKL	9	Unmodified	_KLEDDIVKL_					0	0	0		tr|A0A7D6VXK5|A0A7D6VXK5_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12395PE=4SV=1	tr|A0A7D6VXK5|A0A7D6VXK5_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12395PE=4SV=1	tr|A0A7D6VXK5|A0A7D6VXK5_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12395PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	537.807373046875	2	536.816064	1071.61758	0.82431	0.0004425	-0.85365	-0.00045825	-0.02934	-1.575E-05	536.8154889093805	98.288	2.3517	96.529	95.77	98.122	-1.7595					89	45	4	0	0	0	0.027358	1	6547	6547		65.465	0	1	353540			24108	35287	19721	19744	26804	26804					0.08463165446005405
KLEDFYRFQFF	11	Unmodified	_KLEDFYRFQFF_					0	0	0		SPTAN1|p.S43F|1|0.31|ENSG00000197694|chr9:128566868-128566868|C/T|missense_variant	SPTAN1|p.S43F|1|0.31|ENSG00000197694|chr9:128566868-128566868|C/T|missense_variant	SPTAN1|p.S43F|1|0.31|ENSG00000197694|chr9:128566868-128566868|C/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.2901611328125	3	513.925877	1538.7558	0.047958	2.4647E-05	-0.56245	-0.00028906	-0.51449	-0.00026441	514.2602130396994	45.232	0.44873	42.522	42.348	42.797	-2.7097					11	8	2	0	0	0	0.02642	1	2641	2641		6.3209	0	1	14394			24109	32918	19722	19745	26805	26805					0.007972886944344282
KLEDHPKSF	9	Unmodified	_KLEDHPKSF_					0	0	0			REV__ENST00000483412.5_1_9:123170580-123298708:-|nuORF	REV__ENST00000483412.5_1_9:123170580-123298708:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	551.7875366210938	2	550.790381	1099.56621	1.049	0.00057776	-3.1691	-0.0017455	-2.1202	-0.0011678	550.7882631814281	111.75	0.64376	110.64	110.2	110.84	-1.1038					15	12	2	0	0	0	0.027425	1	8095	8095		79.713	15.505	1	7477.6	+		24110	15772	19723	19746	26806	26806					0.02040841471944077
KLEDHPKSF	9	Unmodified	_KLEDHPKSF_					0	0	0			REV__ENST00000483412.5_1_9:123170580-123298708:-|nuORF	REV__ENST00000483412.5_1_9:123170580-123298708:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	550.790381	1099.56621	0.1492	8.2177E-05	-0.82427	-0.000454	-0.67507	-0.00037182	551.2918809031672	112.18	0.62608	110.66	110.42	111.05	-1.5111	0.0098424	0.0013584	NaN	79.713	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12424	+		24111	15772	19723	19746							0.02040841471944077
KLEDRIFAI	9	Unmodified	_KLEDRIFAI_					0	0	0			REV__tr|A0A553SLQ4|A0A553SLQ4_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_21110PE=4SV=1	REV__tr|A0A553SLQ4|A0A553SLQ4_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_21110PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	552.8273315429688	2	552.824224	1103.63389	1.9539	0.0010802	-1.0898	-0.00060249	0.86408	0.00047769	552.8236216601792	85.421	0.62267	85.421	85.169	85.791	0					39	14	4	0	0	0	0.35444	1	8970	8970		56.721	3.7844	1	1802400	+		24112	30251	19724	19747	26807	26807					0.08622291402775772
KLEDRIFAI	9	Unmodified	_KLEDRIFAI_					0	0	0			REV__tr|A0A553SLQ4|A0A553SLQ4_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_21110PE=4SV=1	REV__tr|A0A553SLQ4|A0A553SLQ4_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_21110PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	552.824224	1103.63389	1.9539	0.0010802	-1.0898	-0.00060249	0.86408	0.00047769	552.8236216601792	85.421	0.62267	85.421	85.169	85.791	0	0	0	NaN	56.721	39	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1802400	+		24113	30251	19724	19747							0.08622291402775772
KLEEEREQKR	10	Unmodified	_KLEEEREQKR_					0	0	0		ENST00000477679.1_1_1:6511829-6520203:+|nuORF;nc|ENSG00000187017|B1AK53-2|ESPN;ENSG00000187017|ENST00000645284|ESPN	ENST00000477679.1_1_1:6511829-6520203:+|nuORF	ENST00000477679.1_1_1:6511829-6520203:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	449.7543029785156	3	448.912519	1343.71573	-0.60554	-0.00027184	-0.15004	-6.7353E-05	-0.75558	-0.00033919	448.91252833708546	44.727	0.71349	41.688	41.413	42.127	-3.0385					22	13	2	0	0	0	0.027089	1	2266	2266		25.126	0	1	58573			24114	8382	19725	19748	26808	26808					0.05761742023878469
KLEEERRQKE	10	Unmodified	_KLEEERRQKE_					0	0	0			REV__ENSG00000172775|ENST00000309137|PSME3IP1	REV__ENSG00000172775|ENST00000309137|PSME3IP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	449.75335693359375	3	448.912519	1343.71573	0.11659	5.2339E-05	0.33329	0.00014962	0.44988	0.00020196	448.91238817019513	39.04	0.44912	39.04	38.793	39.242	0					21	9	3	0	0	0	0.027187	1	2285	2285		19.263	7.8081	1	168000	+		24115	21727	19726	19749	26809	26809					0.05761742023901206
KLEEFAIKKIL	11	Unmodified	_KLEEFAIKKIL_					0	0	0			REV__tr|A0A7D6VTB1|A0A7D6VTB1_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16020PE=4SV=1	REV__tr|A0A7D6VTB1|A0A7D6VTB1_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16020PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	444.6160888671875	3	444.614751	1330.82242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.017	1	89.017	88.517	89.517	0								0	0	0	0.19469	1	9488	9488		29.551	0.97402	1		+		24116	31589	19727	19750	26810	26810					0.1702452425638512
KLEELTPSSSS	11	Unmodified	_KLEELTPSSSS_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-2|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	OvCa99_classI_Rep5	1	589.3017578125	2	589.300975	1176.5874	-0.83238	-0.00049052	-1.0286	-0.00060618	-1.861	-0.0010967	589.3001924637921	36.459	4.6814	36.459	35.984	40.666	0					182	103	3	0	0	0	0.70761	1	2006	2006		27.047	1.4733	1	805190			24117	4713	19728	19751	26811	26811					0.006167619901589205
KLEEMRKAT	9	Unmodified	_KLEEMRKAT_					0	0	0		ENSG00000151838|ENST00000537690|CCDC175	ENSG00000151838|ENST00000537690|CCDC175	ENSG00000151838|ENST00000537690|CCDC175	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.3043823242188	2	553.305341	1104.59613	0.040438	2.2375E-05	-0.71127	-0.00039355	-0.67083	-0.00037118	553.3048359158634	31.732	0.34744	31.732	31.509	31.857	0					8	6	2	0	0	0	0.027462	1	1338	1338		27.882	0	1	26589			24118	5588	19729	19752	26812	26812					0.048014571456405974
KLEENDRLL	9	Unmodified	_KLEENDRLL_					0	0	0		tr|A0A553SGJ5|A0A553SGJ5_NIACIRadicalSAMproteinOS=NialliacirculansOX=1397GN=CEQ21_11000PE=4SV=1	tr|A0A553SGJ5|A0A553SGJ5_NIACIRadicalSAMproteinOS=NialliacirculansOX=1397GN=CEQ21_11000PE=4SV=1	tr|A0A553SGJ5|A0A553SGJ5_NIACIRadicalSAMproteinOS=NialliacirculansOX=1397GN=CEQ21_11000PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	566.3099975585938	2	565.31422	1128.61389	-0.33863	-0.00019143	-0.4419	-0.00024981	-0.78053	-0.00044124	565.3146090333048	59.402	2.1276	56.622	55.838	57.966	-2.7801					203	40	7	0	0	0	0.37135	1	4379	4379		54.776	3.5836	1	1937000			24119	33163	19730	19753	26813	26813					0.05472495672142941
KLEEQARAK	9	Unmodified	_KLEEQARAK_					0	0	0		nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;nc|ENSG00000085733|Q14247-2|CTTN;ENST00000393747.3_1_11:70269077-70281851:+|nuORF	nc|ENSG00000085733|Q14247-3|CTTN	nc|ENSG00000085733|Q14247-3|CTTN	MULTI-MSMS	OvCa9_classI_Rep2	2	536.8088989257812	2	536.809105	1071.60366	1.1636	0.00062461	-1.3402	-0.00071942	-0.17662	-9.4811E-05	536.8082688314144	28.128	1.0203	25.418	25.196	26.216	-2.7097					46	21	3	0	0	0	0.060996	3	554	554;560;566		112.41	9.6376	1	235380			24120	1737	19731	19754	26814;26815;26816	26814					0.07071932737562747
KLEEQRPERVK	11	Unmodified	_KLEEQRPERVK_					0	0	0		ENST00000490277.1_1_13:45913571-45913754:-|nuORF;ENST00000458298.1_1_6:86137181-86137394:-|nuORF;nc|ENSG00000133112|P13693-2|TPT1;ENSG00000133112|ENST00000530705|TPT1;nc|ENSG00000219491|Q9HAU6|TPT1P8	ENST00000490277.1_1_13:45913571-45913754:-|nuORF	ENST00000490277.1_1_13:45913571-45913754:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	471.2718505859375	3	471.272047	1410.79431	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.282	1	18.943	18.443	19.443	-1.3386								0	0	0	0.19454	1	32	32		30.569	1.9921	1				24121	4202	19732	19755	26817	26817					0.10534594328964886
KLEERVYNV	9	Unmodified	_KLEERVYNV_					0	0	0		MSR1|p.G279Afs*2|1|0.11|ENSG00000038945|chr8:16155126-16155127|-/G|frameshift_variant;nc|ENSG00000038945|P21757-2|MSR1;nc|ENSG00000038945|P21757-3|MSR1;ENSG00000038945|ENST00000262101|MSR1	MSR1|p.G279Afs*2|1|0.11|ENSG00000038945|chr8:16155126-16155127|-/G|frameshift_variant	MSR1|p.G279Afs*2|1|0.11|ENSG00000038945|chr8:16155126-16155127|-/G|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	575.3204956054688	2	575.316763	1148.61897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.341	1	57.341	56.841	57.841	0								0	0	0	0.13071	1	4810	4810		66.962	17.52	1				24122	1100	19733	19756	26818	26818					0.05060799534749094
KLEERWRKP	9	Unmodified	_KLEERWRKP_					0	0	0			REV__nc|ENSG00000133302|Q9BQI6-2|SLF1	REV__nc|ENSG00000133302|Q9BQI6-2|SLF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	621.800048828125	2	621.359296	1240.70404	-0.0099251	-6.1671E-06	0.57831	0.00035934	0.56839	0.00035317	621.8607587833918	67.357	0.43369	67.357	67.055	67.489	0					18	10	3	0	0	0	0.027462	1	6259	6259		10.265	0	1	305230	+		24123	19139	19734	19757	26819	26819					0.09331589791213446
KLEERYVR	8	Unmodified	_KLEERYVR_					0	0	0			REV__ENST00000489109.1_1_9:75775238-75780181:+|nuORF	REV__ENST00000489109.1_1_9:75775238-75780181:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	546.8113403320312	2	546.811648	1091.60874	-0.81654	-0.00044649	-0.31743	-0.00017357	-1.134	-0.00062007	546.8115392968579	78.277	5.424	75.924	75.402	80.825	-2.3527					239	107	5	0	0	0	0.48084	2	4133	4133;4181		79.451	13.986	1	6405800	+		24124	19250	19735	19758	26820;26821	26820					0.06660236600191638
KLEERYVR	8	Unmodified	_KLEERYVR_					0	0	0			REV__ENST00000489109.1_1_9:75775238-75780181:+|nuORF	REV__ENST00000489109.1_1_9:75775238-75780181:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.8125	2	546.811648	1091.60874	-0.36236	-0.00019814	-0.77346	-0.00042294	-1.1358	-0.00062108	546.8112979962482	78.673	5.7498	75.922	75.377	81.127	-2.7514					246	118	5	0	0	0	0.47599	1	6391	6391		79.939	16.633	1	7431200	+		24125	19250	19735	19758	26822	26822					0.06660236600191638
KLEEVNREL	9	Unmodified	_KLEEVNREL_					0	0	0			REV__ENST00000472714.1_1_7:107564398-107569844:-|nuORF	REV__ENST00000472714.1_1_7:107564398-107569844:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	566.3106689453125	2	565.31422	1128.61389	-0.33863	-0.00019143	-0.4419	-0.00024981	-0.78053	-0.00044124	565.3146090333048	59.402	2.1276	56.622	55.838	57.966	-2.7801					203	40	7	0	0	0	0.55011	1	4372	4372		37.812	4.9991	1	1937000	+		24126	26318	19736	19759	26823	26823					0.05472495672142941
KLEEVNREL	9	Unmodified	_KLEEVNREL_					0	0	0			REV__ENST00000472714.1_1_7:107564398-107569844:-|nuORF	REV__ENST00000472714.1_1_7:107564398-107569844:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.3170166015625	2	565.31422	1128.61389	1.334	0.00075416	-0.55902	-0.00031602	0.77503	0.00043813	565.3143654450615	59.91	2.2145	56.48	55.964	58.178	-3.43					94	44	7	0	0	0	0.018335	1	4045	4045		148.99	17.955	1	5926000	+		24127	26318	19736	19759	26824	26824					0.05472495672142941
KLEEVNREL	9	Unmodified	_KLEEVNREL_					0	0	0			REV__ENST00000472714.1_1_7:107564398-107569844:-|nuORF	REV__ENST00000472714.1_1_7:107564398-107569844:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	565.31422	1128.61389	1.7676	0.00099926	-1.6513	-0.00093352	0.11628	6.5736E-05	565.3130504968992	59.706	0.86981	56.607	56.137	57.007	-3.0993	0.037252	-0.00044801	NaN	148.99	34	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9405.8	+		24128	26318	19736	19759							0.05472495672142941
KLEFEHFRQFL	11	Unmodified	_KLEFEHFRQFL_					0	0	0		nc|ENSG00000132554|Q8NE09-3|RGS22;ENSG00000132554|ENST00000360863|RGS22;ENST00000519421.1_1_8:101015243-101020719:-|nuORF	nc|ENSG00000132554|Q8NE09-3|RGS22	nc|ENSG00000132554|Q8NE09-3|RGS22	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.2574768066406	3	498.601504	1492.78268	-0.33081	-0.00016494	0.0083965	4.1865E-06	-0.32241	-0.00016075	498.6012712394404	60.277	0.27628	60.277	60.116	60.392	0					14	6	3	0	0	0	0.026277	1	5245	5245		17.833	7.7292	1	247940			24129	4147	19737	19760	26825	26825					0.05600397305647675
KLEILTMSE	9	Unmodified	_KLEILTMSE_					0	0	0			REV__tr|A0A7D6VNU9|A0A7D6VNU9_9CLOTTranscriptionterminationfactorRhoOS=ClostridiumintestinaleOX=36845GN=rhoPE=3SV=1	REV__tr|A0A7D6VNU9|A0A7D6VNU9_9CLOTTranscriptionterminationfactorRhoOS=ClostridiumintestinaleOX=36845GN=rhoPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.2855224609375	2	532.288825	1062.5631	2.6096	0.001389	-3.2069	-0.001707	-0.59732	-0.00031795	532.7894849180273	108.05	0.42529	108.05	107.77	108.2	0					12	9	2	0	0	0	0.027455	1	12193	12193		42.396	0	1	261990	+		24130	31207	19738	19761	26826	26826					0.03431830302929484
KLEKDKPT	8	Unmodified	_KLEKDKPT_					0	0	0		tr|A0A7D6VRW5|A0A7D6VRW5_9CLOTTransketolaseOS=ClostridiumintestinaleOX=36845GN=tktPE=3SV=1	tr|A0A7D6VRW5|A0A7D6VRW5_9CLOTTransketolaseOS=ClostridiumintestinaleOX=36845GN=tktPE=3SV=1	tr|A0A7D6VRW5|A0A7D6VRW5_9CLOTTransketolaseOS=ClostridiumintestinaleOX=36845GN=tktPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	479.7828674316406	2	479.782025	957.549496	-2.9508	-0.0014157	2.92	0.001401	-0.030781	-1.4768E-05	479.78329356454816	36.627	0.98598	33.918	33.548	34.534	-2.7097					53	19	4	0	0	0	0.6962	1	1608	1608		44.117	1.7207	1	381500			24131	34959	19739	19762	26827	26827					0.06902340585986622
KLEKEKSRV	9	Unmodified	_KLEKEKSRV_					0	0	0		ENSG00000143079|ENST00000271277|CTTNBP2NL	ENSG00000143079|ENST00000271277|CTTNBP2NL	ENSG00000143079|ENST00000271277|CTTNBP2NL	MULTI-MSMS	OvCa99_classI_Rep5	1	558.8404541015625	2	558.840405	1115.66626	0.17035	9.52E-05	1.1151	0.00062318	1.2855	0.00071838	558.8408941042002	23.322	0.30277	23.322	23.144	23.447	0					11	5	3	0	0	0	0.60342	1	319	319		31.53	2.3803	1	58778			24132	5009	19740	19763	26828	26828					0.1130507880575351
KLEKIKANPL	10	Unmodified	_KLEKIKANPL_					0	0	0			REV__nc|ENSG00000135945|Q9UBZ9-2|REV1	REV__nc|ENSG00000135945|Q9UBZ9-2|REV1	MULTI-MSMS	OvCa9_classI_Rep2	2	577.3671264648438	2	577.368798	1152.72304	-5.5665	-0.0032139	2.1457	0.0012388	-3.4208	-0.0019751	577.369928690125	160.74	1.397	160.51	160.13	161.53	-0.22696					95	27	5	0	0	0	0.75313	1	16334	16334		24.519	2.5593	1	1195800	+		24133	19338	19741	19764	26829	26829					0.15279126362247553
KLEKILEKLL	10	Unmodified	_KLEKILEKLL_					0	0	0		ENST00000534709.1_1_11:117152603-117155864:+|nuORF;nc|ENSG00000167257|Q8ND24-2|RNF214;ENSG00000167257|ENST00000300650|RNF214	ENST00000534709.1_1_11:117152603-117155864:+|nuORF	ENST00000534709.1_1_11:117152603-117155864:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	409.6082763671875	3	409.607596	1225.80096	1.1396	0.00046679	-0.24169	-9.9E-05	0.89792	0.00036779	409.6074659919173	107.95	5.8573	106.76	106.27	112.13	-1.1978					409	114	4	0	0	0	0.65849	1	8003	8003		35.152	2.4015	1	1037400			24134	6775	19742	19765	26830	26830					0.19709139227666128
KLEKILEKLL	10	Unmodified	_KLEKILEKLL_					0	0	0		ENST00000534709.1_1_11:117152603-117155864:+|nuORF;nc|ENSG00000167257|Q8ND24-2|RNF214;ENSG00000167257|ENST00000300650|RNF214	ENST00000534709.1_1_11:117152603-117155864:+|nuORF	ENST00000534709.1_1_11:117152603-117155864:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	409.607666015625	3	409.607596	1225.80096	0.55097	0.00022568	0.25775	0.00010558	0.80871	0.00033125	409.60762934156605	108.64	8.1164	106.92	106.42	114.53	-1.7256					461	158	5	0	0	0	0.67987	1	10324	10324		32.751	0	1	863570			24135	6775	19742	19765	26831	26831					0.19709139227666128
KLEKRCPL	8	Unmodified	_KLEKRCPL_					0	0	0		ENST00000563945.1_1_15:28566521-28566608:-|nuORF	ENST00000563945.1_1_15:28566521-28566608:-|nuORF	ENST00000563945.1_1_15:28566521-28566608:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.27783203125	2	493.794412	985.574271	1.9146	0.00094544	1.0337	0.00051041	2.9483	0.0014559	493.7970523761771	76.541	0.15768	76.541	76.443	76.6	0					5	3	2	0	0	0	0.028476	1	7678	7678		38.806	15.764	1	64554			24136	13795	19743	19766	26832	26832					0.08090697187708429
KLEKRDQK	8	Unmodified	_KLEKRDQK_					0	0	0			REV__tr|A0A553SKU7|A0A553SKU7_NIACIAlkalinephosphataseOS=NialliacirculansOX=1397GN=CEQ21_19445PE=3SV=1	REV__tr|A0A553SKU7|A0A553SKU7_NIACIAlkalinephosphataseOS=NialliacirculansOX=1397GN=CEQ21_19445PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	522.8148193359375	2	522.811648	1043.60874	3.6226	0.0018939	3.1965	0.0016711	6.8191	0.0035651	522.8132523431473	25.845	0.53336	23.136	22.984	23.517	-2.7097					20	12	2	0	0	0	0.74992	1	302	302		26.693	1.1189	1	38144	+		24137	30154	19744	19767	26833	26833					0.08868236600164892
KLEKRLDDSL	10	Unmodified	_KLEKRLDDSL_					0	0	0		ENSG00000115364|ENST00000393909|MRPL19	ENSG00000115364|ENST00000393909|MRPL19	ENSG00000115364|ENST00000393909|MRPL19	MULTI-MSMS	OvCa9_classI_Rep4_	4	608.8499755859375	2	608.848427	1215.6823	0.74235	0.00045198	1.8792	0.0011442	2.6216	0.0015961	608.8494691803728	112.05	1.3269	110.54	110.26	111.59	-1.5111					53	25	3	0	0	0	0.53396	1	10341	10341		23.523	0.94304	1	185400			24138	3090	19745	19768	26834	26834					0.08308740252005009
KLELGSDQEI	10	Unmodified	_KLELGSDQEI_					0	0	0		nc|ENSG00000243244|Q9Y6Q2-3|STON1;nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;ENSG00000243244|ENST00000404752|STON1	nc|ENSG00000243244|Q9Y6Q2-3|STON1	nc|ENSG00000243244|Q9Y6Q2-3|STON1	MULTI-MSMS	OvCa9_classI_Rep2	2	566.2981567382812	2	566.298236	1130.58192	-0.94412	-0.00053466	-0.19184	-0.00010864	-1.136	-0.00064329	566.2979066209101	99.965	2.3305	99.134	98.418	100.75	-0.83051					77	46	4	0	0	0	0.43433	1	9137	9137		63.534	2.5619	1	343040			24139	1397	19746	19769	26835	26835					0.021850831983556418
KLELSTLT	8	Unmodified	_KLELSTLT_					0	0	0			REV__nc|ENSG00000138039|P22888-2|LHCGR	REV__nc|ENSG00000138039|P22888-2|LHCGR	MULTI-MSMS	OvCa99_classI_Rep5	1	452.7710266113281	2	452.771126	903.527698	1.1688	0.00052922	-1.3063	-0.00059147	-0.13748	-6.2249E-05	452.7704123603052	139.8	1.0809	139.8	139.51	140.59	0					44	22	3	0	0	0	0.66704	1	16334	16334		50.025	4.0726	1	354730	+		24140	19502	19747	19770	26836	26836					0.07207535837426349
KLEMTETSNPN	11	Unmodified	_KLEMTETSNPN_					0	0	0			REV__tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1	REV__tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	632.29931640625	2	632.29791	1262.58127	2.1448	0.0013562	-0.71963	-0.00045502	1.4252	0.00090114	632.2973182859397	118.54	0.47003	118.54	118.3	118.77	0					24	9	3	0	0	0	0.36853	1	13597	13597		63.426	12.234	1	313360	+		24141	31524	19748	19771	26837	26837					-0.039520795129874386
KLEMTETSNPN	11	Unmodified	_KLEMTETSNPN_					0	0	0			REV__tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1	REV__tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	632.29791	1262.58127	1.2352	0.00078104	-2.4816	-0.0015691	-1.2464	-0.00078808	632.2964370283362	119.96	0.49156	118.93	118.72	119.22	-1.0271	0.16692	-0.001862	NaN	63.426	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20861	+		24142	31524	19748	19771							-0.039520795129874386
KLEMTETSNPN	11	Unmodified	_KLEMTETSNPN_					0	0	0			REV__tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1	REV__tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	632.29791	1262.58127	-0.97375	-0.0006157	-0.049683	-3.1415E-05	-1.0234	-0.00064711	632.7988994616434	120.17	0.62782	118.82	118.61	119.24	-1.3444	0.060793	0.0012134	NaN	63.426	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20724	+		24143	31524	19748	19771							-0.039520795129874386
KLENQLALLQ	10	Unmodified	_KLENQLALLQ_					0	0	0		ENSG00000205832|ENST00000444310|C16orf96	ENSG00000205832|ENST00000444310|C16orf96	ENSG00000205832|ENST00000444310|C16orf96	MULTI-MSMS	OvCa9_classI_Rep4_	4	585.3501586914062	2	585.348063	1168.68157	-0.99429	-0.00058201	3.7857	0.002216	2.7914	0.001634	585.3502574875387	74.144	2.7716	70.914	70.628	73.399	-3.2308					180	57	6	0	0	0	0.44431	1	5909	5909		62.107	5.6736	1	5583100			24144	9087	19749	19772	26838	26838					0.10397945602926484
KLEQVEKELL	10	Unmodified	_KLEQVEKELL_					0	0	0		ENST00000495005.5_1_21:35281377-35288052:-|nuORF;ENST00000491703.5_1_21:35279611-35286837:-|nuORF;ENSG00000241837|ENST00000290299|ATP5PO	ENST00000495005.5_1_21:35281377-35288052:-|nuORF	ENST00000495005.5_1_21:35281377-35288052:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	614.8624877929688	2	614.861003	1227.70745	1.3231	0.00081354	0.36634	0.00022525	1.6895	0.0010388	614.8611628645756	93.449	0.4514	93.449	93.221	93.673	0					22	10	3	0	0	0	0.24997	1	10128	10128		95.815	2.6719	1	2053700			24145	9355	19750	19773	26839	26839					0.10270795054566406
KLEQYLHT	8	Unmodified	_KLEQYLHT_					0	0	0			REV__tr|A0A553SLV3|A0A553SLV3_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21375PE=4SV=1	REV__tr|A0A553SLV3|A0A553SLV3_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21375PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.2779541015625	2	516.279649	1030.54475	1.9427	0.001003	0.39092	0.00020183	2.3337	0.0012048	516.2796563810392	106.08	0.57087	106.08	105.83	106.41	0					21	12	2	0	0	0	0.028476	1	11923	11923		44.117	9.9443	1	490510	+		24146	30269	19751	19774	26840	26840					0.03069456443222407
KLEQYVKQL	9	Unmodified	_KLEQYVKQL_					0	0	0		ENSG00000139629|ENST00000356317|GALNT6;GALNT6|p.C393Lfs*13|1|0.1|ENSG00000139629|chr12:51359322-51359322|C/-|frameshift_variant	ENSG00000139629|ENST00000356317|GALNT6	ENSG00000139629|ENST00000356317|GALNT6	MULTI-MSMS	OvCa9_classI_Rep4_	4	574.8388061523438	2	574.837331	1147.66011	-0.87533	-0.00050317	0.20724	0.00011913	-0.66808	-0.00038404	574.8373813616681	91.362	5.8049	88.819	88.449	94.254	-2.5425					226	116	5	0	0	0	0.38969	1	7945	7945		52.937	1.744	1	3993100			24147	4791	19752	19775	26841	26841					0.09218560574208823
KLESIGQRI	9	Unmodified	_KLESIGQRI_					0	0	0		nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1;PREX1|p.C968Wfs*56|1|0.22|ENSG00000124126|chr20:48650120-48650121|-/ACCAAGGGTCCCACTGGCTGGCCCGAAGCTGC|frameshift_variant;nc|ENSG00000124126|Q8TCU6-2|PREX1;PREX1|p.T970Vfs*46|1|0.08|ENSG00000124126|chr20:48650116-48650117|-/CATGGTGGTGATGCAGTGCTGGGTGTAC|frameshift_variant	nc|ENSG00000124126|Q8TCU6-3|PREX1;PREX1|p.T970Vfs*46|1|0.08|ENSG00000124126|chr20:48650116-48650117|-/CATGGTGGTGATGCAGTGCTGGGTGTAC|frameshift_variant	nc|ENSG00000124126|Q8TCU6-3|PREX1	MULTI-MSMS	OvCa99_classI_Rep5	1	522.3147583007812	2	522.314023	1042.61349	-0.63956	-0.00033405	-0.42049	-0.00021963	-1.0601	-0.00055368	522.3139871266707	56.421	0.69793	56.421	56.135	56.833	0					40	16	4	0	0	0	0.025955	1	4668	4668		139.97	12.509	1	3075400			24148	14997;15520	19753	19776	26842	26842					0.09389120742957857
KLETFPKVAI	10	Unmodified	_KLETFPKVAI_					0	0	0			REV__tr|A0A553SIB5|A0A553SIB5_NIACIExonucleaseOS=NialliacirculansOX=1397GN=CEQ21_14560PE=4SV=1	REV__tr|A0A553SIB5|A0A553SIB5_NIACIExonucleaseOS=NialliacirculansOX=1397GN=CEQ21_14560PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	573.349853515625	2	573.350074	1144.6856	0.21495	0.00012324	3.1575	0.0018103	3.3724	0.0019336	573.3517000735841	164.39	1.2433	164.39	163.8	165.04	0					56	46	2	0	0	0	0.82648	1	19168	19168		15.642	4.1308	1	24380	+		24149	29880	19754	19777	26843	26843					0.11904035096677035
KLETQPQEE	9	Unmodified	_KLETQPQEE_					0	0	0		ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-2|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL;nc|ENSG00000138078|Q4J6C6-3|PREPL;ENST00000540817.1_1_2:44571042-44588692:-|nuORF;PREPL|p.R175Mfs*3|1|0.08|ENSG00000138078|chr2:44343837-44343838|-/A|frameshift_variant;PREPL|p.Q222Hfs*2|1|0.15|ENSG00000138078|chr2:44342503-44342504|-/AG|frameshift_variant	ENSG00000138078|ENST00000409411|PREPL	ENSG00000138078|ENST00000409411|PREPL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.8480834960938	2	551.274761	1100.53497	-0.26971	-0.00014869	-1.3702	-0.00075537	-1.6399	-0.00090406	551.2738601536282	103	0.94041	100.81	100.36	101.3	-2.1994					32	17	2	0	0	0	0.027433	1	9251	9251		60.972	0	1	82467			24150	4654	19755	19778	26844	26844					-0.01127776352791443
KLETSDAQKL	10	Unmodified	_KLETSDAQKL_					0	0	0		ENST00000323699.8_1_1:224380220-224380307:+|nuORF	ENST00000323699.8_1_1:224380220-224380307:+|nuORF	ENST00000323699.8_1_1:224380220-224380307:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.816162109375	2	566.814053	1131.61355	1.6155	0.00091566	1.3189	0.0007476	2.9344	0.0016633	566.8149073889535	110.19	2.7767	108.59	108.28	111.06	-1.6011					118	52	4	0	0	0	0.40664	1	10162	10162		67.494	5.3863	1	1542500			24151	10392	19756	19779	26845	26845					0.05301075952274914
KLFAGLVHV	9	Unmodified	_KLFAGLVHV_					0	0	0		nc|ENSG00000165475|Q9Y2S2-2|CRYL1;ENSG00000165475|ENST00000298248|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	nc|ENSG00000165475|Q9Y2S2-2|CRYL1	MULTI-MSMS	OvCa99_classI_Rep5	1	492.305908203125	2	492.30547	982.596387	1.4979	0.00073742	0.8115	0.0003995	2.3094	0.0011369	492.3055417186312	92.194	0.88332	92.194	91.879	92.762	0					49	20	3	0	0	0	0.073432	1	9956	9956		105.27	42.29	1	1765900			24152	6563	19757	19780	26846	26846					0.10439244927806612
KLFALKCIK	9	Unmodified	_KLFALKCIK_					0	0	0		ENSG00000008118|ENST00000361322|CAMK1G;nc|ENSG00000008118|Q96NX5-2|CAMK1G	ENSG00000008118|ENST00000361322|CAMK1G	ENSG00000008118|ENST00000361322|CAMK1G	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.8365478515625	2	532.338455	1062.66236	0.084045	4.474E-05	3.4131	0.0018169	3.4972	0.0018617	532.3401527965052	31.392	0.48476	31.392	31.124	31.608	0					13	9	2	0	0	0	0.027462	1	1283	1283		29.15	0	1	270820			24153	912	19758	19781	26847	26847					0.1335331777831925
KLFAVEDLI	9	Unmodified	_KLFAVEDLI_					0	0	0			REV__tr|A0A7D7A3R9|A0A7D7A3R9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22625PE=4SV=1	REV__tr|A0A7D7A3R9|A0A7D7A3R9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22625PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.2957153320312	2	524.307875	1046.6012	-0.57906	-0.00030361	-1.2862	-0.00067436	-1.8652	-0.00097796	524.3069052068653	47.988	1.0454	45.278	45.034	46.079	-2.7097					27	20	2	0	0	0	0.027462	1	2968	2968		34.173	3.6689	1	32268	+		24154	32592	19759	19782	26848	26848					0.07976084279880524
KLFAYHSSN	9	Unmodified	_KLFAYHSSN_					0	0	0		tr|A0A7D6ZI58|A0A7D6ZI58_9CLOTCarbohydrateABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02955PE=3SV=1	tr|A0A7D6ZI58|A0A7D6ZI58_9CLOTCarbohydrateABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02955PE=3SV=1	tr|A0A7D6ZI58|A0A7D6ZI58_9CLOTCarbohydrateABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02955PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.8200073242188	2	533.769448	1065.52434	-1.1984	-0.00063968	-2.9273	-0.0015625	-4.1258	-0.0022022	533.7678642145188	52.025	0.81041	48.851	48.573	49.384	-3.1734					22	15	2	0	0	0	0.027462	1	3118	3118		27.047	14.088	1	63028			24155	35604	19760	19783	26849	26849					-0.005797142165647529
KLFCITLTL	9	Unmodified	_KLFCITLTL_					0	0	0			REV__ENST00000520356.5_2_8:135490348-135490501:-|nuORF	REV__ENST00000520356.5_2_8:135490348-135490501:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.3145751953125	2	526.314646	1050.61474	-2.5993	-0.001368	2.4633	0.0012965	-0.13591	-7.1533E-05	526.3157286296546	125.6	1.7421	124.19	123.62	125.36	-1.4143					100	34	4	0	0	0	0.22621	4	11946	11911;11946;11982;12020		71.877	5.4482	1	243670	+		24156	27055	19761	19784	26850;26851;26852;26853	26851					0.09145618787465537
KLFCLTLH	8	Unmodified	_KLFCLTLH_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	OvCa99_classI_Rep5	1	487.7800598144531	2	487.778231	973.541908	-0.78188	-0.00038138	3.9025	0.0019036	3.1206	0.0015222	487.7799239958359	37.691	0.4581	37.691	37.438	37.896	0					20	9	3	0	0	0	0.65582	1	2090	2090		52.299	4.6418	1	233090			24157	1811	19762	19785	26854	26854					0.05407909784707954
KLFDDKLQNC	10	Unmodified	_KLFDDKLQNC_					0	0	0		ENST00000524620.1_1_1:52211285-52225200:+|nuORF;ENST00000484890.5_1_1:52211210-52222042:+|nuORF;ENST00000473207.6_1_1:52195646-52226369:+|nuORF;nc|ENSG00000117859|Q96SU4-3|OSBPL9;nc|ENSG00000117859|Q96SU4-7|OSBPL9;nc|ENSG00000117859|Q96SU4-2|OSBPL9;ENSG00000117859|ENST00000428468|OSBPL9;nc|ENSG00000117859|Q96SU4-6|OSBPL9	ENST00000524620.1_1_1:52211285-52225200:+|nuORF	ENST00000524620.1_1_1:52211285-52225200:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	612.3095703125	2	612.308081	1222.60161	0.68059	0.00041673	-0.68375	-0.00041866	-0.003154	-1.9312E-06	612.3072745331417	72.241	0.72726	72.241	71.956	72.684	0					32	17	3	0	0	0	0.11648	1	7033	7033		109.44	32.121	1	1176500			24158	3280	19763	19786	26855	26855					-0.0007886406253874156
KLFDDYKL	8	Unmodified	_KLFDDYKL_					0	0	0			REV__ENSG00000175220|ENST00000311956|ARHGAP1	REV__ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.3131103515625	2	521.2844	1040.55425	0.42634	0.00022224	-0.62835	-0.00032755	-0.20201	-0.00010531	521.284006431744	151.05	0.50467	151.05	150.79	151.3	0					13	9	2	0	0	0	0.028476	1	17705	17705		73.975	7.5455	1	30564	+		24159	21882	19764	19787	26856	26856					0.035592247287468126
KLFDHAVSKF	10	Unmodified	_KLFDHAVSKF_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4;ACSL4|p.G463Dfs*7|1|0.03|ENSG00000068366|chrX:109668151-109668152|-/AT|frameshift_variant;ACSL4|p.G463Yfs*25|1|0.02|ENSG00000068366|chrX:109668152-109668153|-/AGATTAAAGATGTCAAAGCTAGGTA|frameshift_variant	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	OvCa9_classI_Rep2	2	596.32958984375	2	596.329673	1190.64479	-0.15859	-9.4571E-05	-0.11752	-7.0082E-05	-0.27611	-0.00016465	596.3296378011544	71.863	2.824	69.355	69.068	71.892	-2.5071					149	53	6	0	0	0	0.0016265	9	5795	5790;5795;5800;5806;5812;5818;5824;5831;5839		173.24	74.94	1	1456900			24160	1390	19765	19788	26857;26858;26859;26860;26861;26862;26863;26864;26865	26858					0.0570969377702113
KLFDHAVSKF	10	Unmodified	_KLFDHAVSKF_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4;ACSL4|p.G463Dfs*7|1|0.03|ENSG00000068366|chrX:109668151-109668152|-/AT|frameshift_variant;ACSL4|p.G463Yfs*25|1|0.02|ENSG00000068366|chrX:109668152-109668153|-/AGATTAAAGATGTCAAAGCTAGGTA|frameshift_variant	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	OvCa9_classI_Rep3	3	596.3295288085938	2	596.329673	1190.64479	0.96077	0.00057293	-1.212	-0.00072278	-0.25128	-0.00014984	596.3290413550404	72.278	3.5986	69.676	69.23	72.828	-2.6023					179	72	5	0	0	0	8.5148E-06	9	3420	3417;3420;3426;3432;3438;3444;3450;3457;3465		187.5	97.134	1	1843400			24161	1390	19765	19788	26866;26867;26868;26869;26870;26871;26872;26873;26874	26867					0.0570969377702113
KLFDHAVSKF	10	Unmodified	_KLFDHAVSKF_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4;ACSL4|p.G463Dfs*7|1|0.03|ENSG00000068366|chrX:109668151-109668152|-/AT|frameshift_variant;ACSL4|p.G463Yfs*25|1|0.02|ENSG00000068366|chrX:109668152-109668153|-/AGATTAAAGATGTCAAAGCTAGGTA|frameshift_variant	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	OvCa9_classI_Rep4_	4	596.3305053710938	2	596.329673	1190.64479	-0.44878	-0.00026762	0.0021824	1.3014E-06	-0.4466	-0.00026632	596.3296681489936	73.416	2.1585	70.019	69.64	71.798	-3.3961					148	44	5	0	0	0	0.0020852	5	5708	5674;5683;5695;5708;5723		169.65	84.491	1	1742200			24162	1390	19765	19788	26875;26876;26877;26878;26879	26878					0.0570969377702113
KLFDKLLEY	9	Unmodified	_KLFDKLLEY_					0	0	0		nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-5|API5;SDHAF2-API5|3|fusion;SDHAF2-API5|2|fusion;nc|ENSG00000166181|Q9BZZ5-6|API5;SDHAF2-API5|1|fusion;ENST00000397055.2_1_2:178862247-178862907:-|nuORF	nc|ENSG00000166181|Q9BZZ5-3|API5	nc|ENSG00000166181|Q9BZZ5-3|API5	MULTI-MSMS	OvCa9_classI_Rep2	2	584.8342895507812	2	584.834257	1167.65396	-0.066713	-3.9016E-05	-0.16945	-9.91E-05	-0.23616	-0.00013812	584.8340142739406	109.22	1.6322	109.05	108.72	110.35	-0.17237					92	32	4	0	0	0	0.084152	5	10278	10253;10259;10265;10271;10278		101.46	15.598	1	327440			24163	6648	19766	19789	26880;26881;26882;26883;26884	26884					0.07684042342702924
KLFDKLLEY	9	Unmodified	_KLFDKLLEY_					0	0	0		nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-5|API5;SDHAF2-API5|3|fusion;SDHAF2-API5|2|fusion;nc|ENSG00000166181|Q9BZZ5-6|API5;SDHAF2-API5|1|fusion;ENST00000397055.2_1_2:178862247-178862907:-|nuORF	nc|ENSG00000166181|Q9BZZ5-3|API5	nc|ENSG00000166181|Q9BZZ5-3|API5	MULTI-MSMS	OvCa9_classI_Rep3	3	584.834228515625	2	584.834257	1167.65396	-0.60942	-0.00035641	0.27847	0.00016286	-0.33094	-0.00019355	584.8341796993359	110.67	1.8714	109.53	109.03	110.9	-1.1444					90	34	4	0	0	0	0.1243	5	8015	7991;7996;8002;8008;8015		90.601	26.07	1	241640			24164	6648	19766	19789	26885;26886;26887;26888;26889	26889					0.07684042342702924
KLFDKLLEY	9	Unmodified	_KLFDKLLEY_					0	0	0		nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-5|API5;SDHAF2-API5|3|fusion;SDHAF2-API5|2|fusion;nc|ENSG00000166181|Q9BZZ5-6|API5;SDHAF2-API5|1|fusion;ENST00000397055.2_1_2:178862247-178862907:-|nuORF	nc|ENSG00000166181|Q9BZZ5-3|API5	nc|ENSG00000166181|Q9BZZ5-3|API5	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.833740234375	2	584.834257	1167.65396	-0.062285	-3.6426E-05	-0.25124	-0.00014693	-0.31352	-0.00018336	584.8339486728624	111.14	1.9383	109.54	109.07	111.01	-1.6011					92	34	4	0	0	0	0.1149	2	10250	10226;10250		93.143	40.207	1	334470			24165	6648	19766	19789	26890;26891	26891					0.07684042342702924
KLFDNGFDI	9	Unmodified	_KLFDNGFDI_					0	0	0		tr|A0A553SHT6|A0A553SHT6_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_13585PE=4SV=1	tr|A0A553SHT6|A0A553SHT6_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_13585PE=4SV=1	tr|A0A553SHT6|A0A553SHT6_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_13585PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.8095092773438	2	534.771657	1067.52876	-0.42113	-0.00022521	0.23378	0.00012502	-0.18735	-0.00010019	534.7715375555842	96.471	1.4061	94.046	93.457	94.863	-2.4256					58	27	4	0	0	0	0.027447	1	8484	8484		56.721	25.191	1	208690			24166	33310	19767	19790	26892	26892					-0.0023024979368528875
KLFDYLNQ	8	Unmodified	_KLFDYLNQ_					0	0	0			REV__nc|ENSG00000163349|Q86Z02-2|HIPK1;REV__nc|ENSG00000110422|Q9H422-2|HIPK3	REV__nc|ENSG00000163349|Q86Z02-2|HIPK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.3012084960938	2	520.7742	1039.53385	-1.1318	-0.00058943	1.7016	0.00088615	0.56977	0.00029672	520.7741859172526	81.872	1.1625	79.189	78.865	80.028	-2.683					71	23	4	0	0	0	0.028476	1	6842	6842		37.159	1.5408	1	318420	+		24167	20829;17981	19768	19791	26893	26893					0.015660540689168556
KLFEKVKEV	9	Unmodified	_KLFEKVKEV_					0	0	0		ENSG00000064763|ENST00000536681|FAR2	ENSG00000064763|ENST00000536681|FAR2	ENSG00000064763|ENST00000536681|FAR2	MULTI-MSMS	OvCa99_classI_Rep5	1	560.343994140625	2	560.342249	1118.66995	-0.1339	-7.503E-05	-0.78733	-0.00044118	-0.92123	-0.00051621	560.3417473848327	51.975	0.81859	51.975	51.747	52.566	0					33	18	2	0	0	0	0.034473	1	4043	4043		131.62	12.873	1	3430600			24168	1306	19769	19792	26894	26894					0.11535748579603933
KLFEQVQKLT	10	Unmodified	_KLFEQVQKLT_					0	0	0			REV__ENSG00000155660|ENST00000652332|PDIA4	REV__ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	OvCa99_classI_Rep5	1	411.91162109375	3	411.911568	1232.71287	0.63487	0.00026151	-2.8803	-0.0011864	-2.2454	-0.00092491	411.9103385648816	47.79	0.65269	47.79	47.551	48.204	0					25	14	2	0	0	0	0.67729	1	3470	3470		33.039	5.3955	1	1320400	+		24169	20434	19770	19793	26895	26895					0.105825186370339
KLFEQVQKLT	10	Unmodified	_KLFEQVQKLT_					0	0	0			REV__ENSG00000155660|ENST00000652332|PDIA4	REV__ENSG00000155660|ENST00000652332|PDIA4	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	411.911568	1232.71287	0.63487	0.00026151	-2.8803	-0.0011864	-2.2454	-0.00092491	411.9103385648816	47.79	0.65269	47.79	47.551	48.204	0	0	0	NaN	33.039	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1320400	+		24170	20434	19770	19793							0.105825186370339
KLFESLFACNI	11	Unmodified	_KLFESLFACNI_					0	0	0		ASTE1|p.F63L|1|0.22|ENSG00000034533|chr3:131025118-131025118|G/T|missense_variant	ASTE1|p.F63L|1|0.22|ENSG00000034533|chr3:131025118-131025118|G/T|missense_variant	ASTE1|p.F63L|1|0.22|ENSG00000034533|chr3:131025118-131025118|G/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	429.2461853027344	3	428.893408	1283.65839	-0.23105	-9.9096E-05	0.52677	0.00022593	0.29572	0.00012683	428.8935143749288	50.826	0.61299	50.826	50.551	51.164	0					30	13	3	0	0	0	0.026113	1	3895	3895		9.2118	0	1	181860			24171	123	19771	19794	26896	26896					0.027911834939914115
KLFGMIITI	9	Oxidation (M)	_KLFGM(Oxidation (M))IITI_		KLFGM(1)IITI		KLFGM(74)IITI	0	0	1		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OvCa99_classI_Rep5	1	526.31640625	2	526.314646	1050.61474	0.85618	0.00045062	1.3276	0.00069873	2.1838	0.0011493	526.3150290033577	123.69	1.2838	123.69	123.14	124.42	0					68	27	3	0	0	0	0.21231	1	14253	14253		74.255	13.283	1	715080			24172	1242;1335;12773;14885	19772	19795	26897	26897		46			0.09145618787465537
KLFGMIITI	9	Oxidation (M)	_KLFGM(Oxidation (M))IITI_		KLFGM(1)IITI		KLFGM(96)IITI	0	0	1		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OvCa9_classI_Rep2	2	526.3145141601562	2	526.314646	1050.61474	0.087692	4.6154E-05	-0.15203	-8.0013E-05	-0.064333	-3.386E-05	526.3143544270938	124.13	1.5768	123.9	123.24	124.82	-0.23193					93	31	4	0	0	0	0.10363	3	12054	12043;12054;12065		96.19	19.416	1	220960			24173	1242;1335;12773;14885	19772	19795	26898;26899;26900	26899		46			0.09145618787465537
KLFGMIITI	9	Oxidation (M)	_KLFGM(Oxidation (M))IITI_		KLFGM(1)IITI		KLFGM(100)IITI	0	0	1		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OvCa9_classI_Rep3	3	526.3140869140625	2	526.314646	1050.61474	0.91829	0.00048331	-0.94242	-0.00049601	-0.024135	-1.2703E-05	526.3139752685214	125.3	2.0349	124.25	123.69	125.72	-1.0519					99	38	3	0	0	0	0.083631	4	9761	9715;9732;9744;9761		101.6	10.945	1	239120			24174	1242;1335;12773;14885	19772	19795	26901;26902;26903;26904	26904		46			0.09145618787465537
KLFGMIITI	9	Unmodified	_KLFGMIITI_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OvCa99_classI_Rep5	1	518.3180541992188	2	518.317189	1034.61982	0.49653	0.00025736	1.4806	0.0007674	1.9771	0.0010248	518.3179257681784	139.8	5.0824	139.8	139.03	144.11	0					338	103	5	0	0	0	0.010619	5	16332	16311;16332;16357;16382;16448		166.78	52.33	1	7167300			24175	1242;1335;12773;14885	19772	19796	26905;26906;26907;26908;26909	26906					0.10389922650097105
KLFGMIITI	9	Unmodified	_KLFGMIITI_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.3170166015625	2	518.317189	1034.61982	0.34341	0.000178	-0.98312	-0.00050957	-0.6397	-0.00033157	518.3166998206033	141.35	1.3008	139.89	139.14	140.44	-1.4627					37	24	3	0	0	0	0.51865	1	13766	13766		40.778	0	1	37602			24176	1242;1335;12773;14885	19772	19796	26910	26910					0.10389922650097105
KLFGMIITI	9	Unmodified	_KLFGMIITI_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	518.317189	1034.61982	-0.80122	-0.00041528	0.46764	0.00024238	-0.33358	-0.0001729	518.3171087180202	139.68	0.2466	139.46	139.3	139.55	-0.22696	-0.26194	1.2039E-05	NaN	166.78	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4772.9			24177	1242;1335;12773;14885	19772	19796							0.10389922650097105
KLFGYQSL	8	Unmodified	_KLFGYQSL_					0	0	0		SPECC1L-MKL1|1|fusion;SPECC1L-TMEM62|1|fusion;SPECC1L-CDH4|1|fusion;ENSG00000100014|ENST00000314328|SPECC1L;nc|ENSG00000100014|Q69YQ0-2|SPECC1L	SPECC1L-MKL1|1|fusion;SPECC1L-CDH4|1|fusion;ENSG00000100014|ENST00000314328|SPECC1L	SPECC1L-MKL1|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.3057556152344	2	478.26601	954.517468	-0.63992	-0.00030605	-1.0308	-0.00049301	-1.6707	-0.00079906	478.2650572535079	41.114	0.36441	38.16	37.841	38.205	-2.9541					10	6	2	0	0	0	0.028476	1	1796	1796		60.972	16.855	1	7022.3			24178	32917;32916;1993	19773	19797	26911	26911					0.0383897290286086
KLFIGGLNV	9	Unmodified	_KLFIGGLNV_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MSMS	OvCa99_classI_Rep5	1	480.79791259765625	2	480.797478	959.580402	2.1537	0.0010355	-0.15474	-7.4397E-05	1.9989	0.00096108	480.797221036939	112.9	0.72273	112.9	112.61	113.33	0					38	15	3	0	0	0	0.13482	2	12853	12853;12875		87.754	19.27	1	1062400			24179	7709	19774	19798	26912;26913	26912					0.09899538690910958
KLFIGGLNV	9	Unmodified	_KLFIGGLNV_					0	0	0		ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	ENSG00000177733|ENST00000314940|HNRNPA0	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	480.797478	959.580402	0.59855	0.00028778	-0.90761	-0.00043638	-0.30905	-0.00014859	480.7969710039388	114.57	0.36691	113.17	112.99	113.36	-1.3977	0.13569	-0.00059718	NaN	87.754	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11948			24180	7709	19774	19798							0.09899538690910958
KLFIRVPKQ	9	Unmodified	_KLFIRVPKQ_					0	0	0			REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR	REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.8662719726562	2	564.866226	1127.7179	1.7897	0.001011	-2.1503	-0.0012146	-0.36055	-0.00020366	564.8649170320913	32.751	0.9951	30.056	29.853	30.848	-2.6954					41	19	3	0	0	0	0.70177	1	808	808		17.365	1.7232	1	53179	+		24181	19683	19775	19799	26914	26914					0.15914867290302936
KLFKNFKP	8	Unmodified	_KLFKNFKP_					0	0	0		ENST00000372894.7_1_20:43247265-43247484:+|nuORF	ENST00000372894.7_1_20:43247265-43247484:+|nuORF	ENST00000372894.7_1_20:43247265-43247484:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.2786865234375	2	511.313295	1020.61204	1.7943	0.00091745	-3.9851	-0.0020376	-2.1908	-0.0011202	511.3110676783187	92.127	0.67369	92.127	91.92	92.594	0					34	15	3	0	0	0	0.028476	1	10010	10010		17.365	0	1	1307000			24182	10987	19776	19800	26915	26915					0.10255531444840926
KLFLLLLP	8	Unmodified	_KLFLLLLP_					0	0	0		ENST00000355112.7_1_15:91293288-91298045:+|nuORF	ENST00000355112.7_1_15:91293288-91298045:+|nuORF	ENST00000355112.7_1_15:91293288-91298045:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.7779846191406	2	478.830789	955.647025	-0.60999	-0.00029208	1.6713	0.00080029	1.0614	0.00050821	478.8316631551514	73.954	0.21031	71.983	71.904	72.114	-1.9711					5	3	2	0	0	0	0.028476	1	6051	6051		13.775	0	1	8685.1			24183	10673	19777	19801	26916	26916					0.16742774252804793
KLFLPSEFK	9	Unmodified	_KLFLPSEFK_					0	0	0		ENSG00000168676|ENST00000304372|KCTD19	ENSG00000168676|ENST00000304372|KCTD19	ENSG00000168676|ENST00000304372|KCTD19	MULTI-MSMS	OvCa9_classI_Rep3	3	554.8233032226562	2	554.823692	1107.63283	-1.3862	-0.00076909	1.295	0.00071852	-0.091138	-5.0566E-05	554.8242746673808	101.52	1.4671	99.914	99.498	100.97	-1.6053					47	27	2	0	0	0	0.44568	1	6944	6944		47.657	3.2801	1	302750			24184	6932	19778	19802	26917	26917					0.0833207703383323
KLFNKFPIV	9	Unmodified	_KLFNKFPIV_					0	0	0		L1ME4a_dup12675|chr6:37045387-37045843:+|1.4283673080813548|0.2832341124959364|2.33|429.0|30|2|anti-sense	L1ME4a_dup12675|chr6:37045387-37045843:+|1.4283673080813548|0.2832341124959364|2.33|429.0|30|2|anti-sense	L1ME4a_dup12675|chr6:37045387-37045843:+|1.4283673080813548|0.2832341124959364|2.33|429.0|30|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	553.3379516601562	2	553.342052	1104.66955	-3.3842	-0.0018726	-4.2424	-0.0023475	-7.6266	-0.0042201	553.3396004097149	154.97	0.78694	154.74	154.48	155.26	-0.22696					36	19	3	0	0	0	0.65476	1	15802	15802		25.45	3.4903	1	38307			24185	14619	19779	19803	26918	26918					0.12140373650390757
KLFPFYFHI	9	Unmodified	_KLFPFYFHI_					0	0	0		ENSG00000105518|ENST00000354882|TMEM205;ENST00000588321.1_1_19:11453493-11456176:-|nuORF	ENSG00000105518|ENST00000354882|TMEM205	ENSG00000105518|ENST00000354882|TMEM205	MULTI-MSMS	OvCa99_classI_Rep5	1	606.3298950195312	2	606.334227	1210.6539	1.9094	0.0011577	-0.22745	-0.00013791	1.682	0.0010198	606.3339513785413	129.66	1.0319	129.66	129.26	130.29	0					49	21	4	0	0	0	0.35444	1	15047	15047		60.294	32.412	1	383920			24186	2467	19780	19804	26919	26919					0.057000871333457326
KLFPHNSI	8	Unmodified	_KLFPHNSI_					0	0	0			REV__ENSG00000181215|ENST00000531445|C4orf50	REV__ENSG00000181215|ENST00000531445|C4orf50	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.30596923828125	2	478.271627	954.528701	-0.49007	-0.00023438	-2.7462	-0.0013135	-3.2363	-0.0015478	478.2688788309576	40.613	0.47241	37.658	37.368	37.841	-2.9541					11	8	2	0	0	0	0.028476	1	1771	1771		65.803	0	1	8323.8	+		24187	22221	19781	19805	26920	26920					0.04961794996984281
KLFPKILTY	9	Unmodified	_KLFPKILTY_					0	0	0			REV__ENSG00000177182|ENST00000325897|CLVS1	REV__ENSG00000177182|ENST00000325897|CLVS1	MULTI-MSMS	OvCa9_classI_Rep3	3	561.8452758789062	2	561.84971	1121.68487	-5.3491	-0.0030054	-1.8492	-0.001039	-7.1983	-0.0040444	561.8485776281088	152.58	1.5019	151.61	151.19	152.7	-0.97299					81	30	4	0	0	0	0.6653	1	13058	13058		24.203	3.2558	1	218830	+		24188	21989	19782	19806	26921	26921					0.12889240447611883
KLFPPFLMG	9	Unmodified	_KLFPPFLMG_					0	0	0		L1ME1_dup6617|chr3:129847425-129848424:-|1.095250631527543|0.4453241998369115|1.3|429.0|46|1|anti-sense	L1ME1_dup6617|chr3:129847425-129848424:-|1.095250631527543|0.4453241998369115|1.3|429.0|46|1|anti-sense	L1ME1_dup6617|chr3:129847425-129848424:-|1.095250631527543|0.4453241998369115|1.3|429.0|46|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	525.2960205078125	2	525.296256	1048.57796	-0.7425	-0.00039003	-0.53097	-0.00027892	-1.2735	-0.00066895	525.2962332041591	48.014	1.342	45.304	44.885	46.228	-2.7097					84	26	5	0	0	0	0.58665	1	2962	2962		33.516	0.70317	1	278320			24189	14616	19783	19807	26922	26922					0.05561366961569547
KLFQFIKT	8	Unmodified	_KLFQFIKT_					0	0	0			REV__nc|ENSG801|P63132|HERVK_113_pro;REV__nc|ENSG821|P63135|ERVK-7_pol;REV__nc|ENSG851|Q9QC07|ERVK-18_pol	REV__nc|ENSG821|P63135|ERVK-7_pol	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.94091796875	2	512.813128	1023.6117	-0.13708	-7.0297E-05	-2.526	-0.0012954	-2.6631	-0.0013657	513.3137620411834	60.642	0.74776	60.642	60.195	60.943	0					21	17	2	0	0	0	0.028476	1	5282	5282		23.042	3.0457	1	155530	+		24190	29230;29235;29228	19784	19808	26923	26923					0.10084111724984268
KLFQKLAED	9	Unmodified	_KLFQKLAED_					0	0	0		L1PA8A_dup160|chr1:247133953-247136664:+|1.5135014545884105|0.4971293307696565|1.61|429.0|41|2|sense	L1PA8A_dup160|chr1:247133953-247136664:+|1.5135014545884105|0.4971293307696565|1.61|429.0|41|2|sense	L1PA8A_dup160|chr1:247133953-247136664:+|1.5135014545884105|0.4971293307696565|1.61|429.0|41|2|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	546.3075561523438	2	546.308406	1090.60226	-0.063939	-3.493E-05	-0.084791	-4.6322E-05	-0.14873	-8.1253E-05	546.3083031951708	46.634	1.0957	46.634	46.198	47.294	0					52	24	3	0	0	0	0.22961	1	3312	3312		71.296	7.0884	1	934870			24191	14770	19785	19809	26924	26924					0.060582986487816015
KLFRGPLVI	9	Unmodified	_KLFRGPLVI_					0	0	0		nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MULTI-MSMS	OvCa99_classI_Rep5	1	521.8440551757812	2	521.84222	1041.66989	2.1377	0.0011155	0.27715	0.00014463	2.4148	0.0012602	521.8422118437187	94.224	1.2805	94.224	93.923	95.204	0					75	29	4	0	0	0	0.18193	1	10241	10241		79.451	16.145	1	6918000			24192	8817	19786	19810	26925	26925					0.15071793370270825
KLFRLRAM	8	Unmodified	_KLFRLRAM_					0	0	0			REV__ENST00000589803.5_1_17:67102167-67114054:-|nuORF	REV__ENST00000589803.5_1_17:67102167-67114054:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	517.8192749023438	2	517.818221	1033.62189	-2.2306	-0.0011551	4.4695	0.0023144	2.2389	0.0011593	517.8203985316244	146.61	1.347	146.38	145.92	147.27	-0.22696					66	26	3	0	0	0	0.73288	1	14786	14786		35.201	4.6971	1	90796	+		24193	20372	19787	19811	26926	26926					0.10642396178559466
KLFRTALE	8	Unmodified	_KLFRTALE_					0	0	0			REV__nc|ENSG00000110435|O00330-2|PDHX	REV__nc|ENSG00000110435|O00330-2|PDHX	MULTI-MSMS	OvCa9_classI_Rep2	2	489.2915344238281	2	489.292559	976.570566	-0.29489	-0.00014429	-0.11707	-5.7281E-05	-0.41196	-0.00020157	489.2924862097453	60.206	1.6231	57.436	56.83	58.453	-2.7702					62	30	3	0	0	0	0.59148	2	4426	4411;4426		65.803	12.83	1	524080	+		24194	17984	19788	19812	26927;26928	26928					0.08134350685509162
KLFSKNHETK	10	Unmodified	_KLFSKNHETK_					0	0	0			REV__ENST00000376811.5_2_9:77676431-77681674:-|nuORF	REV__ENST00000376811.5_2_9:77676431-77681674:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	616.322998046875	2	616.343312	1230.67207	1.4821	0.00091347	4.4404	0.0027368	5.9225	0.0036503	616.3459444853163	83.014	1.4073	83.014	82.222	83.629	0					56	32	3	0	0	0	0.026782	1	8568	8568		30.318	6.795	1	1416200	+		24195	25107	19789	19813	26929	26929					0.0659617731741946
KLFSRLKI	8	Unmodified	_KLFSRLKI_					0	0	0			REV__ENSG00000155754|ENST00000439140|C2CD6	REV__ENSG00000155754|ENST00000439140|C2CD6	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.2418518066406	2	502.834394	1003.65424	-0.49045	-0.00024662	0.18109	9.1059E-05	-0.30936	-0.00015556	502.8343180607307	55.381	0.94376	55.381	55.15	56.094	0					41	22	2	0	0	0	0.028476	1	4609	4609		42.396	0	1	560110	+		24196	20439	19790	19814	26930	26930					0.15255506853213774
KLFTHTIVP	9	Unmodified	_KLFTHTIVP_					0	0	0		nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7;nc|ENSG00000111912|Q8NI08-4|NCOA7;NCOA7|p.I269Lfs*24|1|0.04|ENSG00000111912|chr6:125885259-125885260|-/GTTGTTGCTTGATTGTTTTCTGTGTGTT|frameshift_variant;nc|ENSG00000111912|Q8NI08-3|NCOA7;NCOA7|p.E628Lfs*8|1|0.08|ENSG00000111912|chr6:125889932-125889933|-/AG|frameshift_variant	nc|ENSG00000111912|Q8NI08-7|NCOA7	nc|ENSG00000111912|Q8NI08-7|NCOA7	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.3173828125	2	528.316035	1054.61752	-0.93602	-0.00049451	1.3857	0.00073207	0.44965	0.00023756	528.3166159596233	102.86	1.7279	100.66	99.727	101.46	-2.1994					72	29	4	0	0	0	0.44294	1	9279	9279		47.916	5.5195	1	493660			24197	2867	19791	19815	26931	26931					0.09239210236637518
KLFTLRKE	8	Unmodified	_KLFTLRKE_					0	0	0			REV__nc|ENSG00000101251|Q5TEA6-2|SEL1L2	REV__nc|ENSG00000101251|Q5TEA6-2|SEL1L2	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.3270874023438	2	517.821484	1033.62842	-0.96358	-0.00049896	1.1965	0.00061957	0.23292	0.00012061	517.8219754066308	52.873	0.59088	50.059	49.788	50.379	-2.8139					22	11	3	0	0	0	0.028476	1	3570	3570		45.972	0	1	49921	+		24198	28772	19792	19816	26932	26932					0.11294612610936383
KLFTQILRV	9	Unmodified	_KLFTQILRV_					0	0	0		ENSG00000126458|ENST00000246792|RRAS	ENSG00000126458|ENST00000246792|RRAS	ENSG00000126458|ENST00000246792|RRAS	MULTI-MSMS	OvCa9_classI_Rep3	3	559.35888671875	2	559.358234	1116.70191	-0.59711	-0.000334	0.41046	0.0002296	-0.18665	-0.00010441	559.3583649114603	98.616	1.7053	96.931	96.543	98.248	-1.685					85	32	4	0	0	0	0.28934	1	6594	6594		64.207	5.4253	1	574930			24199	3782	19793	19817	26933	26933					0.1482316105341397
KLFVIAQKI	9	Unmodified	_KLFVIAQKI_					0	0	0		ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF	ENSG00000183520|ENST00000373014|UTP11	ENSG00000183520|ENST00000373014|UTP11	MULTI-MSMS	OvCa99_classI_Rep5	1	530.3514404296875	2	530.349877	1058.6852	2.0214	0.001072	0.19059	0.00010108	2.2119	0.0011731	530.34981935342	85.587	0.70193	85.587	85.292	85.994	0					36	16	3	0	0	0	0.041116	1	8982	8982		125.81	29.999	1	1710800			24200	8081	19794	19818	26934	26934					0.15820660167446476
KLFVNAQRL	9	Unmodified	_KLFVNAQRL_					0	0	0		nc|ENSG00000115839|Q15042-3|RAB3GAP1	nc|ENSG00000115839|Q15042-3|RAB3GAP1	nc|ENSG00000115839|Q15042-3|RAB3GAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	544.8331909179688	2	544.832383	1087.65021	0.98974	0.00053924	-1.6201	-0.00088267	-0.63033	-0.00034342	544.8312709169089	74.564	0.8436	74.564	74.324	75.168	0					73	20	5	0	0	0	0.21395	1	7385	7385		73.975	2.679	1	34783000			24201	14978	19795	19819	26935	26935					0.10989417359519393
KLFVNEAR	8	Unmodified	_KLFVNEAR_					0	0	0			REV__nc|ENSG00000163808|Q9NS87-2|KIF15	REV__nc|ENSG00000163808|Q9NS87-2|KIF15	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.2507019042969	2	488.782359	975.550165	1.345	0.00065741	3.8185	0.0018664	5.1635	0.0025238	488.78273630414367	91.224	0.27495	91.224	91.057	91.332	0					9	6	2	0	0	0	0.028476	1	9824	9824		47.916	10.756	1	101350	+		24202	20892	19796	19820	26936	26936					0.06141180025701942
KLFVRAISL	9	Unmodified	_KLFVRAISL_					0	0	0			REV__tr|A0A7D7A1D5|A0A7D7A1D5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20410PE=4SV=1	REV__tr|A0A7D7A1D5|A0A7D7A1D5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20410PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.7937622070312	2	523.839677	1045.6648	-1.1676	-0.00061166	0.95936	0.00050255	-0.20829	-0.00010911	523.8401512025688	92.07	1.1648	89.527	89.012	90.176	-2.5425					35	22	2	0	0	0	0.027462	1	7970	7970		15.642	0	1	38768	+		24203	32486	19797	19821	26937	26937					0.14379489507655308
KLFYRALELI	10	Unmodified	_KLFYRALELI_					0	0	0			REV__nc|ENSG00000005189|Q96IC2-2|REXO5	REV__nc|ENSG00000005189|Q96IC2-2|REXO5	MULTI-SECPEP	OvCa99_classI_Rep5	1	423.225830078125	3	422.592058	1264.75434	2.2655	0.00095737	1.0505	0.00044392	3.3159	0.0014013	422.9268193421279	77.381	0.79747	77.381	77.126	77.924	0					28	18	2	0	0	0	0.027142	1	7819	7819		10.587	0.4829	1	190440	+		24204	16395	19798	19822	26938	26938					0.13255699396381715
KLFYVHYI	8	Unmodified	_KLFYVHYI_					0	0	0		ENST00000527544.5_1_11:65480238-65482390:+|nuORF;nc|ENSG00000172977|Q92993-2|KAT5;nc|ENSG00000172977|Q92993-4|KAT5;nc|ENSG00000172977|Q92993|KAT5;ENSG00000172977|ENST00000341318|KAT5;ENST00000532042.5_1_11:65479717-65480742:+|nuORF;KAT5|p.S248Cfs*43|1|0.11|ENSG00000172977|chr11:65714645-65714646|-/GTCTCTTACAACCTGGTATTTTCCACTGG|frameshift_variant	ENST00000527544.5_1_11:65480238-65482390:+|nuORF	ENST00000527544.5_1_11:65480238-65482390:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.805419921875	2	541.805303	1081.59605	-1.3029	-0.00070592	-0.10471	-5.673E-05	-1.4076	-0.00076265	541.8052691155432	80.327	1.6539	77.616	76.791	78.445	-2.7106					68	33	5	0	0	0	0.68312	1	6580	6580		46.766	4.3703	1	758010			24205	7336	19799	19823	26939	26939					0.058518252079238664
KLGEHQLFLK	10	Unmodified	_KLGEHQLFLK_					0	0	0			REV__ENSG00000172123|ENST00000304905|SLFN12	REV__ENSG00000172123|ENST00000304905|SLFN12	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.22454833984375	3	404.908157	1211.70264	0.79607	0.00032234	-2.7426	-0.0011105	-1.9465	-0.00078815	404.9067918227834	33.664	0.62978	33.664	33.483	34.113	0					36	12	5	0	0	0	0.026942	1	1552	1552		20.03	5.9445	1	336590	+		24206	21675	19800	19824	26940	26940					0.10525955702451029
KLGEILANL	9	Unmodified	_KLGEILANL_					0	0	0		nc|ENSG00000008838|O75448-2|MED24;ENSG00000008838|ENST00000394128|MED24;MED24|p.G459Efs*15|1|0.18|ENSG00000008838|chr17:40028859-40028860|-/T|frameshift_variant;ENST00000585249.1_1_17:38189391-38189818:-|nuORF	nc|ENSG00000008838|O75448-2|MED24	nc|ENSG00000008838|O75448-2|MED24	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.7181701660156	2	485.800217	969.585882	-0.00045877	-2.2287E-07	-0.40924	-0.00019881	-0.4097	-0.00019903	485.7996118459898	67.443	0.34386	67.443	67.298	67.642	0					14	8	2	0	0	0	0.027459	1	6312	6312		52.937	1.744	1	203650			24207	925	19801	19825	26941	26941					0.09987217482705546
KLGEIVTTI	9	Unmodified	_KLGEIVTTI_					0	0	0		ENST00000483848.5_1_3:57563094-57582900:-|nuORF;ENST00000493378.1_1_3:57569737-57582900:-|nuORF;ENSG00000168374|ENST00000303436|ARF4;ENST00000463733.5_1_7:127228552-127229672:+|nuORF;ENST00000470670.5_1_1:228270461-228285316:+|nuORF;ENSG00000004059|ENST00000000233|ARF5;ENST00000397387.2_1_13:101408869-101409262:-|nuORF;ENST00000605447.1_1_9:136944076-136944538:+|nuORF;nc|ENSG00000134287|P61204-2|ARF3;ENSG00000143761|ENST00000272102|ARF1;ENSG00000134287|ENST00000256682|ARF3	ENST00000483848.5_1_3:57563094-57582900:-|nuORF;nc|ENSG00000134287|P61204-2|ARF3	nc|ENSG00000134287|P61204-2|ARF3	MULTI-MSMS	OvCa99_classI_Rep5	1	487.301025390625	2	487.30005	972.585547	1.4958	0.0007289	0.38456	0.0001874	1.8804	0.0009163	487.30014042561476	93.639	1.7322	93.639	93.386	95.119	0					101	40	5	0	0	0	0.018335	2	10174	10147;10174		148.99	32.083	1	25143000			24208	6896;4277	19802	19826	26942;26943	26943					0.09815797762848888
KLGFFKRKYEK	11	Unmodified	_KLGFFKRKYEK_					0	0	0		ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	ENSG00000164171|ENST00000296585|ITGA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.2908020019531	3	481.953878	1442.8398	3.2086	0.0015464	-1.5875	-0.0007651	1.6211	0.0007813	481.9532513794413	102.44	0.68039	102.44	102.21	102.89	0					31	15	3	0	0	0	0.025612	1	11398	11398		29.551	12.384	1	695450			24209	6425	19803	19827	26944	26944					0.13609864582008413
KLGFPAKFL	9	Unmodified	_KLGFPAKFL_					0	0	0		nc|ENSG00000112592|P20226-2|TBP;ENSG00000112592|ENST00000392092|TBP	nc|ENSG00000112592|P20226-2|TBP	nc|ENSG00000112592|P20226-2|TBP	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.8128356933594	2	510.81567	1019.61679	-2.1881	-0.0011177	-2.0057	-0.0010245	-4.1938	-0.0021423	510.814522374635	148.32	0.8961	146.88	146.63	147.52	-1.435					43	17	3	0	0	0	0.59983	1	14627	14627		31.955	5.2619	1	141170			24210	2913	19804	19828	26945	26945					0.10776415587611154
KLGFPAKFL	9	Unmodified	_KLGFPAKFL_					0	0	0		nc|ENSG00000112592|P20226-2|TBP;ENSG00000112592|ENST00000392092|TBP	nc|ENSG00000112592|P20226-2|TBP	nc|ENSG00000112592|P20226-2|TBP	MULTI-MATCH	OvCa9_classI_Rep3	3		2	510.81567	1019.61679	-3.9208	-0.0020028	-0.36873	-0.00018836	-4.2896	-0.0021912	510.8153447013776	147.87	1.1473	146.92	146.6	147.75	-0.9512	0.0169	0.00086412	NaN	31.955	48	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134460			24211	2913	19804	19828							0.10776415587611154
KLGFRKMLQ	9	Unmodified	_KLGFRKMLQ_					0	0	0			REV__nc|ENSG00000186976|Q5THR3-5|EFCAB6	REV__nc|ENSG00000186976|Q5THR3-5|EFCAB6	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.2349853515625	2	560.836611	1119.65867	0.49508	0.00027766	-4.4845	-0.0025151	-3.9895	-0.0022374	560.8339444216057	67.532	0.58662	67.532	67.255	67.842	0					23	14	2	0	0	0	0.027462	1	6336	6336		37.159	24.2	1	1138700	+		24212	22624	19805	19829	26946	26946					0.10362648004502262
KLGFRKMLQ	9	Unmodified	_KLGFRKMLQ_					0	0	0			REV__nc|ENSG00000186976|Q5THR3-5|EFCAB6	REV__nc|ENSG00000186976|Q5THR3-5|EFCAB6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	560.836611	1119.65867	0.60965	0.00034192	-5.099	-0.0028597	-4.4893	-0.0025178	560.8335705492224	70.47	0.70547	67.899	67.512	68.218	-2.5707	0.072007	-0.00057108	NaN	29.15	24	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54736	+		24213	22624	19805	19829							0.10362648004502262
KLGFRKMLQ	9	Unmodified	_KLGFRKMLQ_					0	0	0			REV__nc|ENSG00000186976|Q5THR3-5|EFCAB6	REV__nc|ENSG00000186976|Q5THR3-5|EFCAB6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	560.836611	1119.65867	0.1211	6.7919E-05	-3.9842	-0.0022345	-3.8631	-0.0021666	560.8342179337201	70.77	0.51467	68.05	67.75	68.265	-2.7196	0.22323	0.00067939	NaN	29.15	25	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86891	+		24214	22624	19805	19829							0.10362648004502262
KLGGASPTRLL	11	Unmodified	_KLGGASPTRLL_					0	0	0			REV__ENST00000504117.1_1_5:93752768-93812878:-|nuORF	REV__ENST00000504117.1_1_5:93752768-93812878:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	557.2775268554688	2	556.842948	1111.67134	1.0092	0.00056198	2.1316	0.001187	3.1408	0.0017489	556.8439888738233	124.82	0.78911	124.58	124.27	125.06	-0.2359					27	15	3	0	0	0	0.02535	1	12162	12162		37.508	3.3356	1	32181	+		24215	22490	19806	19830	26947	26947					0.11997382668369028
KLGGRAAF	8	Unmodified	_KLGGRAAF_					0	0	0			REV__chr7:56074736-56078102|94|18.98|0.32|5.89|+|2|SUMF2,SUMF2|1	REV__chr7:56074736-56078102|94|18.98|0.32|5.89|+|2|SUMF2,SUMF2|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	409.25360107421875	2	410.245412	818.476272	0.79541	0.00032631	-1.6067	-0.00065914	-0.81128	-0.00033282	410.2446449689438	89.266	0.78579	86.664	86.336	87.122	-2.6027					26	15	2	0	0	0	0.028476	1	7660	7660		20.482	16.166	1	34117	+		24216	16097	19807	19831	26948	26948					0.05977256654023222
KLGGRAAF	8	Unmodified	_KLGGRAAF_					0	0	0			REV__chr7:56074736-56078102|94|18.98|0.32|5.89|+|2|SUMF2,SUMF2|1	REV__chr7:56074736-56078102|94|18.98|0.32|5.89|+|2|SUMF2,SUMF2|1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	410.245412	818.476272	2.6472	0.001086	-3.2738	-0.0013431	-0.62663	-0.00025707	410.24408043103887	87.787	1.3242	86.356	86.139	87.463	-1.4311	-0.22217	-0.00089788	NaN	20.482	46	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24741	+		24217	16097	19807	19831							0.05977256654023222
KLGGRAAF	8	Unmodified	_KLGGRAAF_					0	0	0			REV__chr7:56074736-56078102|94|18.98|0.32|5.89|+|2|SUMF2,SUMF2|1	REV__chr7:56074736-56078102|94|18.98|0.32|5.89|+|2|SUMF2,SUMF2|1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	410.245412	818.476272	0.48669	0.00019966	-1.0613	-0.00043541	-0.57464	-0.00023574	410.2447437937976	88.845	1.2764	86.714	86.112	87.388	-2.1309	0.13635	0.00091746	NaN	20.482	35	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16493	+		24218	16097	19807	19831							0.05977256654023222
KLGHLVKNMK	10	Unmodified	_KLGHLVKNMK_					0	0	0		ENST00000478038.1_1_16:48612021-48612129:-|nuORF	ENST00000478038.1_1_16:48612021-48612129:-|nuORF	ENST00000478038.1_1_16:48612021-48612129:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.356689453125	2	584.355168	1166.69578	-0.5033	-0.0002941	2.9292	0.0017117	2.4259	0.0014176	584.3567763295431	142.42	4.015	140.98	138.81	142.83	-1.4427					242	77	4	0	0	0	0.7759	1	13944	13944		21.96	0	1	214670			24219	12484	19808	19832	26949	26949					0.1191031955024755
KLGIQLESPPI	11	Unmodified	_KLGIQLESPPI_					0	0	0			REV__ENST00000568857.5_3_16:84164853-84177949:-|nuORF	REV__ENST00000568857.5_3_16:84164853-84177949:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8558349609375	2	597.858264	1193.70197	-1.5377	-0.00091935	-1.5701	-0.00093869	-3.1078	-0.001858	597.8570606153338	148.28	4.8676	146.85	145.38	150.25	-1.435					291	102	5	0	0	0	0.63561	1	14642	14642		41.427	2.1738	1	767860	+		24220	27717	19809	19833	26950	26950					0.11287116262769814
KLGKITLLDPN	11	Unmodified	_KLGKITLLDPN_					0	0	0			REV__tr|A0A553STL4|A0A553STL4_NIACIuroporphyrinogen-IIIC-methyltransferaseOS=NialliacirculansOX=1397GN=cobAPE=3SV=1	REV__tr|A0A553STL4|A0A553STL4_NIACIuroporphyrinogen-IIIC-methyltransferaseOS=NialliacirculansOX=1397GN=cobAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3695678710938	2	606.371538	1210.72852	-3.14	-0.001904	-0.05994	-3.6346E-05	-3.1999	-0.0019404	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.72479	1	14998	14998		18.262	0.79408	1	257720	+		24221	30981	19810	19834	26951	26951					0.13158805154080255
KLGKKAGT	8	Unmodified	_KLGKKAGT_					0	0	0			REV__ENSG00000147799|ENST00000377307|ARHGAP39	REV__ENSG00000147799|ENST00000377307|ARHGAP39	MULTI-SECPEP	OvCa9_classI_Rep4_	4	402.5761413574219	2	401.760895	801.507237	2.1099	0.00084768	-2.152	-0.00086457	-0.042043	-1.6891E-05	401.7599397002026	47.457	1.2143	44.349	44.133	45.348	-3.1077					33	23	2	0	0	0	0.028476	1	2589	2589		18.324	1.8513	1	31443	+		24222	20083	19811	19835	26952	26952					0.09854409968272648
KLGKLSPIK	9	Unmodified	_KLGKLSPIK_					0	0	0			REV__tr|A0A553SK76|A0A553SK76_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_18060PE=4SV=1	REV__tr|A0A553SK76|A0A553SK76_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_18060PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	492.3340148925781	2	492.334227	982.653902	0.58016	0.00028563	-1.0688	-0.0005262	-0.48863	-0.00024057	492.33353393369697	45.15	1.1509	42.441	42.049	43.2	-2.7097					49	22	3	0	0	0	0.57283	1	2617	2617		35.152	6.0025	1	156000	+		24223	30087	19812	19836	26953	26953					0.1618808713336648
KLGKNFYINRK	11	Unmodified	_KLGKNFYINRK_					0	0	0			REV__tr|A0A7D6ZN19|A0A7D6ZN19_9CLOTBeta-propellerdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14325PE=4SV=1	REV__tr|A0A7D6ZN19|A0A7D6ZN19_9CLOTBeta-propellerdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14325PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	460.94073486328125	3	460.941861	1379.80375	0.9912	0.00045688	-4.1734	-0.0019237	-3.1822	-0.0014668	460.939931944109	66.339	1.2721	63.393	62.959	64.231	-2.9459					62	24	4	0	0	0	0.72516	1	2739	2739		13.508	3.404	1	124720	+		24224	32114	19813	19837	26954	26954					0.12904407405153506
KLGLKPLEV	9	Unmodified	_KLGLKPLEV_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-MSMS	OvCa99_classI_Rep5	1	498.827392578125	2	498.826235	995.637917	2.1433	0.0010692	0.1111	5.5417E-05	2.2544	0.0011246	498.82612641896964	79.995	0.99832	79.995	79.704	80.702	0					47	23	3	0	0	0	0.075543	1	8178	8178		104.06	27.283	1	2149900			24225	7547	19814	19838	26955	26955					0.13992380896468148
KLGLRQIQ	8	Unmodified	_KLGLRQIQ_					0	0	0		ENSG00000136274|ENST00000490531|NACAD	ENSG00000136274|ENST00000490531|NACAD	ENSG00000136274|ENST00000490531|NACAD	MULTI-MSMS	OvCa9_classI_Rep2	2	478.3061828613281	2	478.306001	954.597449	-0.0091048	-4.3549E-06	-0.34741	-0.00016617	-0.35651	-0.00017052	478.3057665530243	40.536	2.2179	37.826	37.551	39.769	-2.7097					109	44	4	0	0	0	0.65582	1	2086	2086		52.299	2.2746	1	1098200			24226	4481	19815	19839	26956	26956					0.11833459296701676
KLGNIKTL	8	Unmodified	_KLGNIKTL_					0	0	0		NISCH|p.L754Sfs*219|1|0.14|ENSG00000010322|chr3:52487751-52487751|C/-|frameshift_variant;nc|ENSG00000010322|Q9Y2I1-4|NISCH;nc|ENSG00000010322|Q9Y2I1-3|NISCH;ENST00000489895.5_1_3:52512001-52514911:+|nuORF;ENSG00000010322|ENST00000345716|NISCH	NISCH|p.L754Sfs*219|1|0.14|ENSG00000010322|chr3:52487751-52487751|C/-|frameshift_variant;ENSG00000010322|ENST00000345716|NISCH	NISCH|p.L754Sfs*219|1|0.14|ENSG00000010322|chr3:52487751-52487751|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	444.2519226074219	2	443.789653	885.564752	-0.25743	-0.00011424	2.4886	0.0011044	2.2312	0.00099017	443.7898854129501	46.908	0.76129	43.836	43.707	44.468	-3.0724					19	14	2	0	0	0	0.028476	1	2528	2528		29.15	16.943	1	17404			24227	15431;944	19816	19840	26957	26957					0.11739252173845216
KLGNSVILVP	10	Unmodified	_KLGNSVILVP_					0	0	0			REV__nc|ENSG00000139291|Q96HH6-2|TMEM19	REV__nc|ENSG00000139291|Q96HH6-2|TMEM19	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.8369750976562	2	520.329142	1038.64373	0.09849	5.1247E-05	-0.56087	-0.00029183	-0.46238	-0.00024059	520.3287284684136	114.69	1.3818	114.58	114.31	115.69	-0.11777					45	27	2	0	0	0	0.026802	1	10987	10987		34.173	7.4796	1	381110	+		24228	19601	19817	19841	26958	26958					0.12595479408150823
KLGPIIEP	8	Unmodified	_KLGPIIEP_					0	0	0		tr|A0A7D6ZZB4|A0A7D6ZZB4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19380PE=4SV=1	tr|A0A7D6ZZB4|A0A7D6ZZB4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19380PE=4SV=1	tr|A0A7D6ZZB4|A0A7D6ZZB4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19380PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	433.7540588378906	2	433.770929	865.527304	3.2917	0.0014279	-1.5832	-0.00068676	1.7085	0.0007411	433.7700950069721	100.79	0.49404	100.79	100.57	101.06	0					20	11	2	0	0	0	0.028476	1	11179	11179		31.955	0	1	284620			24229	35954	19818	19842	26959	26959					0.08916160908233906
KLGPPCPLAF	10	Unmodified	_KLGPPCPLAF_					0	0	0			REV__ENSG00000160613|ENST00000320934|PCSK7	REV__ENSG00000160613|ENST00000320934|PCSK7	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.7913818359375	2	521.791338	1041.56812	-6.0529	-0.0031583	2.4103	0.0012577	-3.6426	-0.0019007	522.2939441447656	158.19	1.4793	156.6	155.83	157.31	-1.5859					45	42	2	0	0	0	0.71192	1	15635	15635		29.15	0.89528	1	15576	+		24230	20667	19819	19843	26960	26960					0.04900178956177115
KLGQPNYTM	9	Unmodified	_KLGQPNYTM_					0	0	0			REV__tr|A0A7D6VQD0|A0A7D6VQD0_9CLOTDUF871domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02580PE=4SV=1	REV__tr|A0A7D6VQD0|A0A7D6VQD0_9CLOTDUF871domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02580PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.82861328125	2	526.265684	1050.51682	2.3907	0.0012581	-3.0158	-0.0015871	-0.6251	-0.00032897	526.2640505072503	102.7	0.50996	102.7	102.47	102.98	0					20	11	2	0	0	0	0.027462	1	11480	11480		34.173	11.13	1	684970	+		24231	31314	19820	19844	26961	26961					-0.006421898085363864
KLGSKKPEKP	10	Unmodified	_KLGSKKPEKP_					0	0	0		SCN11A|p.Q1345E|1|0.05|ENSG00000168356|chr3:38863218-38863218|G/C|missense_variant	SCN11A|p.Q1345E|1|0.05|ENSG00000168356|chr3:38863218-38863218|G/C|missense_variant	SCN11A|p.Q1345E|1|0.05|ENSG00000168356|chr3:38863218-38863218|G/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	556.3234252929688	2	556.345323	1110.67609	-0.36393	-0.00020247	3.5643	0.001983	3.2003	0.0017805	556.3472429617548	127.48	1.5291	126.04	125.79	127.32	-1.4357					41	29	3	0	0	0	0.027088	1	12132	12132		26.693	6.6961	1	47262			24232	32800	19821	19845	26962	26962					0.12518266811139256
KLGSKKPEKP	10	Unmodified	_KLGSKKPEKP_					0	0	0		SCN11A|p.Q1345E|1|0.05|ENSG00000168356|chr3:38863218-38863218|G/C|missense_variant	SCN11A|p.Q1345E|1|0.05|ENSG00000168356|chr3:38863218-38863218|G/C|missense_variant	SCN11A|p.Q1345E|1|0.05|ENSG00000168356|chr3:38863218-38863218|G/C|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	556.345323	1110.67609	1.3403	0.00074568	2.2379	0.0012451	3.5782	0.0019907	556.3464479671737	126.33	0.88673	126.09	125.75	126.64	-0.2359	-0.0080942	-0.00085244	NaN	19.997	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46951			24233	32800	19821	19845							0.12518266811139256
KLGSNGLRR	9	Unmodified	_KLGSNGLRR_					0	0	0			REV__tr|A0A553SJE2|A0A553SJE2_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_16395PE=3SV=1	REV__tr|A0A553SJE2|A0A553SJE2_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_16395PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.7890319824219	2	500.804157	999.593761	-0.66961	-0.00033534	2.7315	0.0013679	2.0619	0.0010326	500.8054534812941	56.08	1.2147	52.786	52.464	53.679	-3.2944					49	23	4	0	0	0	0.027462	1	3568	3568		15.642	3.435	1	177930	+		24234	30000	19822	19846	26963	26963					0.09394789522855262
KLGSNGLRR	9	Unmodified	_KLGSNGLRR_					0	0	0			REV__tr|A0A553SJE2|A0A553SJE2_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_16395PE=3SV=1	REV__tr|A0A553SJE2|A0A553SJE2_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_16395PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	500.804157	999.593761	-1.4153	-0.00070877	4.0744	0.0020405	2.6591	0.0013317	500.80599038934633	55.616	0.94238	52.812	52.382	53.324	-2.804	0.013336	0.00077052	NaN	10.265	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69053	+		24235	30000	19822	19846							0.09394789522855262
KLGSVPVTV	9	Unmodified	_KLGSVPVTV_					0	0	0		nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MULTI-MSMS	OvCa99_classI_Rep5	1	450.2829284667969	2	450.28166	898.548768	1.0921	0.00049177	1.2893	0.00058053	2.3814	0.0010723	450.282144301214	81.098	0.86818	81.098	80.786	81.654	0					59	20	4	0	0	0	0.055627	2	8356	8326;8356		115.49	42.116	1	10945000			24236	8817	19823	19847	26964;26965	26965					0.09543545936946884
KLGSVPVTV	9	Unmodified	_KLGSVPVTV_					0	0	0		nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MULTI-MSMS	OvCa9_classI_Rep3	3	450.28271484375	2	450.28166	898.548768	-0.83368	-0.00037539	0.56134	0.00025276	-0.27235	-0.00012263	450.2818096602661	82.853	2.9259	80.556	80.283	83.209	-2.2963					129	60	4	0	0	0	0.060996	6	4705	4694;4699;4705;4712;4717;4723		112.41	43.624	1	1260900			24237	8817	19823	19847	26966;26967;26968;26969;26970;26971	26968					0.09543545936946884
KLGSVPVTV	9	Unmodified	_KLGSVPVTV_					0	0	0		nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.2828063964844	2	450.28166	898.548768	0.50602	0.00022785	-0.64168	-0.00028894	-0.13566	-6.1083E-05	450.2812463128651	83.27	2.2542	80.607	80.339	82.594	-2.6629					96	46	3	0	0	0	0.070405	3	6931	6908;6919;6931		107.01	35.712	1	1315700			24238	8817	19823	19847	26972;26973;26974	26974					0.09543545936946884
KLGSVPVTV	9	Unmodified	_KLGSVPVTV_					0	0	0		nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	450.28166	898.548768	2.8742	0.0012942	-3.2346	-0.0014565	-0.36032	-0.00016224	450.2800190478964	82.321	3.5237	80.672	79.971	83.495	-1.6485	0.060404	-0.0018878	NaN	112.41	118	69	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	733070			24239	8817	19823	19847							0.09543545936946884
KLGVKVAS	8	Unmodified	_KLGVKVAS_					0	0	0			REV__tr|A0A7D6W0S8|A0A7D6W0S8_9CLOTDUF1015domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00685PE=4SV=1	REV__tr|A0A7D6W0S8|A0A7D6W0S8_9CLOTDUF1015domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00685PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	401.26226806640625	2	401.263271	800.511988	1.296	0.00052003	-4.2066	-0.001688	-2.9106	-0.0011679	401.26147123184654	136.26	1.7613	136.04	135.22	136.99	-0.22696					76	35	3	0	0	0	0.74209	1	13516	13516		12.959	3.4886	1	533840	+		24240	31864	19824	19848	26975	26975					0.10375294111042876
KLGYPASHD	9	Unmodified	_KLGYPASHD_					0	0	0		GPN2-C1orf172|1|fusion	GPN2-C1orf172|1|fusion	GPN2-C1orf172|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.28778076171875	2	494.248349	986.482145	-0.85769	-0.00042391	-3.585	-0.0017719	-4.4427	-0.0021958	494.24639245048286	28.65	0.44859	28.65	28.34	28.789	0					12	8	2	0	0	0	0.027462	1	966	966		29.15	10.825	1	54012			24241	14348	19825	19849	26976	26976					-0.01163689624968356
KLGYSLARG	9	Unmodified	_KLGYSLARG_					0	0	0		ENSG00000188001|ENST00000345063|TPRG1	ENSG00000188001|ENST00000345063|TPRG1	ENSG00000188001|ENST00000345063|TPRG1	MULTI-SECPEP	OvCa9_classI_Rep3	3	481.78802490234375	2	482.782359	963.550165	-1.0139	-0.00048951	0.77392	0.00037363	-0.24001	-0.00011587	482.7827990510011	82.38	1.2968	80.084	79.735	81.032	-2.2963					76	25	4	0	0	0	0.027462	1	4635	4635		23.042	12.777	1	702290			24242	8445	19826	19850	26977	26977					0.06693180025695256
KLGYSLARG	9	Unmodified	_KLGYSLARG_					0	0	0		ENSG00000188001|ENST00000345063|TPRG1	ENSG00000188001|ENST00000345063|TPRG1	ENSG00000188001|ENST00000345063|TPRG1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	482.782359	963.550165	0.23637	0.00011411	-0.26651	-0.00012867	-0.030147	-1.4555E-05	482.7821683769852	81.853	1.552	80.205	79.767	81.319	-1.6485	0.058862	-0.00036423	NaN	16.473	69	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	372850			24243	8445	19826	19850							0.06693180025695256
KLHAYKFKG	9	Unmodified	_KLHAYKFKG_					0	0	0		tr|A0A553SIW7|A0A553SIW7_NIACIGlucose-1-phosphateadenylyltransferaseOS=NialliacirculansOX=1397GN=glgCPE=3SV=1	tr|A0A553SIW7|A0A553SIW7_NIACIGlucose-1-phosphateadenylyltransferaseOS=NialliacirculansOX=1397GN=glgCPE=3SV=1	tr|A0A553SIW7|A0A553SIW7_NIACIGlucose-1-phosphateadenylyltransferaseOS=NialliacirculansOX=1397GN=glgCPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.29931640625	2	546.321651	1090.62875	-1.5496	-0.00084656	-2.2066	-0.0012055	-3.7562	-0.0020521	546.3205309303886	73.089	0.8227	69.693	69.204	70.027	-3.3961					35	16	3	0	0	0	0.027441	1	5667	5667		55.504	0	1	61601			24244	33434	19827	19851	26978	26978					0.08706032330769631
KLHCKYDI	8	Unmodified	_KLHCKYDI_					0	0	0			REV__PDE11A|p.D619Sfs*16|1|0.06|ENSG00000128655|chr2:177728087-177728106|GTGATCATGGCATCAACGTC/-|frameshift_variant	REV__PDE11A|p.D619Sfs*16|1|0.06|ENSG00000128655|chr2:177728087-177728106|GTGATCATGGCATCAACGTC/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.79180908203125	2	510.27077	1018.52699	1.7689	0.00090262	-2.2755	-0.0011611	-0.50663	-0.00025852	510.269428597327	135	0.67717	135	134.78	135.46	0					34	14	4	0	0	0	0.028476	1	15763	15763		25.45	8.977	1	159400	+		24245	18866	19828	19852	26979	26979					0.018464179167153816
KLHDINAQL	9	Unmodified	_KLHDINAQL_					0	0	0		AP1B1|p.T737Rfs*121|1|0.13|ENSG00000100280|chr22:29334369-29334370|-/CCCA|frameshift_variant;AP1B1|p.G736Afs*18|1|0.18|ENSG00000100280|chr22:29334367-29334368|-/TACCG|frameshift_variant;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1	AP1B1|p.T737Rfs*121|1|0.13|ENSG00000100280|chr22:29334369-29334370|-/CCCA|frameshift_variant	AP1B1|p.T737Rfs*121|1|0.13|ENSG00000100280|chr22:29334369-29334370|-/CCCA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	526.2996215820312	2	526.298373	1050.58219	-0.61422	-0.00032326	0.13043	6.8647E-05	-0.48379	-0.00025462	526.2983916118706	58.872	1.9053	58.872	58.613	60.518	0					93	48	4	0	0	0	0.014622	2	5052	5020;5052		154.12	36.307	1	11344000			24246	97	19829	19853	26980;26981	26981					0.058925477088678235
KLHDSVVMV	9	Unmodified	_KLHDSVVMV_					0	0	0		ENSG00000101220|ENST00000379772|ADISSP;nc|ENSG00000101220|Q9GZN8-2|ADISSP	ENSG00000101220|ENST00000379772|ADISSP	ENSG00000101220|ENST00000379772|ADISSP	MULTI-MSMS	OvCa99_classI_Rep5	1	514.2854614257812	2	514.283877	1026.5532	0.03676	1.8905E-05	-0.3123	-0.00016061	-0.27554	-0.00014171	514.2837113986878	62.561	0.8058	62.561	62.294	63.1	0					37	19	3	0	0	0	0.35444	1	5576	5576		56.721	6.6965	1	2057700			24247	2154	19830	19854	26982	26982					0.04098687088207953
KLHEFKAQLE	10	Unmodified	_KLHEFKAQLE_					0	0	0			REV__nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	REV__nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	MULTI-MSMS	OvCa9_classI_Rep4_	4	621.8439331054688	2	621.845687	1241.67682	-0.84618	-0.00052619	-2.72	-0.0016914	-3.5662	-0.0022176	621.8439210605059	40.717	1.4053	37.763	37.527	38.932	-2.9541					78	26	4	0	0	0	0.39718	1	1780	1780		39.253	0	1	581400	+		24248	22596	19831	19855	26983	26983					0.065650614601509
KLHGGILRI	9	Unmodified	_KLHGGILRI_					0	0	0		ENSG00000129521|ENST00000250457|EGLN3	ENSG00000129521|ENST00000250457|EGLN3	ENSG00000129521|ENST00000250457|EGLN3	MULTI-MSMS	OvCa99_classI_Rep5	1	503.8310852050781	2	503.829643	1005.64473	-0.18897	-9.5209E-05	-0.095954	-4.8345E-05	-0.28492	-0.00014355	503.8295661372009	58.634	0.97705	58.634	58.363	59.34	0					56	24	4	0	0	0	0.50149	1	4979	4979		42.396	1.8235	1	6995600			24249	3932	19832	19856	26984	26984					0.14213738567696055
KLHGKPIRI	9	Unmodified	_KLHGKPIRI_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	531.3507080078125	2	531.350743	1060.68693	-1.1169	-0.00059347	0.31058	0.00016503	-0.80632	-0.00042844	531.3509024346373	34.61	1.4946	34.61	34.398	35.892	0					76	31	5	0	0	0	0.19758	2	1672	1672;1696		76.774	23.423	1	5693700			24250	962;14054	19833	19857	26985;26986	26985					0.15901713976063547
KLHGVNINV	9	Unmodified	_KLHGVNINV_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4;ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	OvCa99_classI_Rep5	1	497.2972412109375	2	497.295633	992.576714	-1.3838	-0.00068816	0.22291	0.00011085	-1.1609	-0.0005773	497.2957414209051	63.915	1.1035	63.915	63.69	64.793	0					82	26	4	0	0	0	0.062324	2	5765	5765;5794		111.65	18.453	1	33699000			24251	7428	19834	19858	26987;26988	26987					0.0801286891704649
KLHGVNINV	9	Unmodified	_KLHGVNINV_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000173933|Q9BWF3-3|RBM4;nc|ENSG00000173933|Q9BWF3-4|RBM4;nc|ENSG00000173933|Q9BWF3-2|RBM4;ENSG00000173914|ENST00000310046|RBM4B	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.2979736328125	2	497.295633	992.576714	0.21808	0.00010845	-0.82057	-0.00040807	-0.60249	-0.00029962	497.2951216374693	68.529	1.4233	65.039	64.769	66.192	-3.4902					46	28	3	0	0	0	0.22961	2	5105	5093;5105		71.296	16.519	1	490110			24252	7428	19834	19858	26989;26990	26990					0.0801286891704649
KLHINHQLN	9	Unmodified	_KLHINHQLN_					0	0	0			REV__ENSG00000129295|ENST00000620350|DNAAF11	REV__ENSG00000129295|ENST00000620350|DNAAF11	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.7626342773438	2	558.817264	1115.61998	0.61956	0.00034622	-2.4353	-0.0013609	-1.8157	-0.0010147	558.8156409028778	57.568	0.92796	57.568	57.309	58.237	0					37	21	4	0	0	0	0.027462	1	4884	4884		23.042	0	1	825150	+		24253	18893	19835	19859	26991	26991					0.06679058694339801
KLHINSLTLMI	11	Unmodified	_KLHINSLTLMI_					0	0	0			REV__OR6C65|p.A186Ffs*20|1|0.08|ENSG00000205328|chr12:55401082-55401083|-/ATTCCACCAACAGAACAAAGCAAGCAAAATATTTA|frameshift_variant	REV__OR6C65|p.A186Ffs*20|1|0.08|ENSG00000205328|chr12:55401082-55401083|-/ATTCCACCAACAGAACAAAGCAAGCAAAATATTTA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	642.382568359375	2	641.881216	1281.74788	-2.5182	-0.0016164	4.166	0.002674	1.6478	0.0010577	641.8839546837315	150.47	2.9704	149.03	147.78	150.75	-1.4344					235	64	4	0	0	0	0.69455	1	14955	14955		31.53	8.4873	1	344900	+		24254	23210	19836	19860	26992	26992					0.11827438173349947
KLHKAILSWR	10	Unmodified	_KLHKAILSWR_					0	0	0			REV__nc|ENSG00000185697|P10243-2|MYBL1	REV__nc|ENSG00000185697|P10243-2|MYBL1	MULTI-MSMS	OvCa99_classI_Rep5	1	626.3942260742188	2	626.387857	1250.76116	0.37775	0.00023662	0.40441	0.00025332	0.78216	0.00048994	626.3880960980439	164.17	2.6761	164.17	163.08	165.75	0					198	100	2	0	0	0	0.78463	2	19098	19098;19247		20.947	3.4789	1	238040	+		24255	22520	19837	19861	26993;26994	26993					0.1458105706758488
KLHKVLDV	8	Unmodified	_KLHKVLDV_					0	0	0			REV__nc|ENSG00000258597|P20848|SERPINA2	REV__nc|ENSG00000258597|P20848|SERPINA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	476.2906494140625	2	476.302927	950.591301	0.0069808	3.325E-06	-0.28534	-0.00013591	-0.27836	-0.00013258	476.3025483362918	58.552	0.56998	58.552	58.322	58.892	0					26	13	3	0	0	0	0.028476	1	4970	4970		23.042	0	1	665390	+		24256	29180	19838	19862	26995	26995					0.11402941065171035
KLHMPEPL	8	Unmodified	_KLHMPEPL_					0	0	0		ASB11|p.L312M|1|0.09|ENSG00000165192|chrX:15283543-15283543|G/T|missense_variant	ASB11|p.L312M|1|0.09|ENSG00000165192|chrX:15283543-15283543|G/T|missense_variant	ASB11|p.L312M|1|0.09|ENSG00000165192|chrX:15283543-15283543|G/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	483.7574157714844	2	482.767863	963.521173	-0.40102	-0.0001936	-2.2749	-0.0010982	-2.6759	-0.0012918	482.7680603851952	133.32	0.63589	132.2	131.98	132.61	-1.1249					15	12	2	0	0	0	0.028476	1	10703	10703		18.324	6.8134	1	21912			24257	120	19839	19863	26996	26996					0.03795319405048758
KLHMPEPL	8	Unmodified	_KLHMPEPL_					0	0	0		ASB11|p.L312M|1|0.09|ENSG00000165192|chrX:15283543-15283543|G/T|missense_variant	ASB11|p.L312M|1|0.09|ENSG00000165192|chrX:15283543-15283543|G/T|missense_variant	ASB11|p.L312M|1|0.09|ENSG00000165192|chrX:15283543-15283543|G/T|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	482.767863	963.521173	0.20382	9.8398E-05	-6.7226	-0.0032455	-6.5188	-0.0031471	482.76506260678303	132.64	0.59203	132.42	132.08	132.67	-0.22697	0.18817	-0.00092622	NaN	18.324	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22472			24258	120	19839	19863							0.03795319405048758
KLHNIQKIESI	11	Unmodified	_KLHNIQKIESI_					0	0	0			REV__nc|ENSG00000168116|Q9HCI6-2|KIAA1586;REV__ENSG00000168116|ENST00000370733|KIAA1586	REV__ENSG00000168116|ENST00000370733|KIAA1586	MULTI-SECPEP	OvCa9_classI_Rep2	2	442.2348937988281	3	441.597871	1321.77178	0.26067	0.00011511	2.5599	0.0011305	2.8206	0.0012456	441.59902732409705	53.873	0.94636	51.059	50.776	51.722	-2.8139					50	18	4	0	0	0	0.025772	1	3635	3635		33.039	4.4627	1	37543	+		24259	21347;28989	19840	19864	26997	26997					0.12376994931378249
KLHPGHSLV	9	Unmodified	_KLHPGHSLV_					0	0	0		ENSG00000144031|ENST00000360589|ANKRD53	ENSG00000144031|ENST00000360589|ANKRD53	ENSG00000144031|ENST00000360589|ANKRD53	MULTI-MSMS	OvCa99_classI_Rep5	1	494.292236328125	2	494.290351	986.566149	1.9558	0.00096671	-0.66727	-0.00032983	1.2885	0.00063689	494.28987887730716	85.035	0.90877	85.035	84.716	85.624	0					51	21	4	0	0	0	0.18193	1	8900	8900		79.451	0	1	2932000			24260	5121	19841	19865	26998	26998					0.07232886262613647
KLHSVTTKL	9	Unmodified	_KLHSVTTKL_					0	0	0		ENSG00000162745|ENST00000294794|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	ENSG00000162745|ENST00000294794|OLFML2B	MULTI-MSMS	OvCa99_classI_Rep5	1	513.8187255859375	2	513.818941	1025.62333	-0.63504	-0.0003263	0.037905	1.9476E-05	-0.59713	-0.00030682	513.8188623989802	38.185	1.4807	38.185	37.983	39.463	0					56	32	4	0	0	0	0.025835	1	2152	2152		140.11	16.904	1	1580000			24261	6226	19842	19866	26999	26999					0.11154308748314179
KLHVILFH	8	Unmodified	_KLHVILFH_					0	0	0			REV__ENSG00000137962|ENST00000260526|ARHGAP29	REV__ENSG00000137962|ENST00000260526|ARHGAP29	MULTI-SECPEP	OvCa9_classI_Rep4_	4	504.7457580566406	2	503.813462	1005.61237	-2.2604	-0.0011388	2.2099	0.0011134	-0.050447	-2.5416E-05	503.8132474538827	125.51	0.25186	124.09	123.94	124.19	-1.4143					6	4	2	0	0	0	0.028476	1	11908	11908		8.8223	0	1	3293.4	+		24262	19496	19843	19867	27000	27000					0.10978951164702266
KLHVKKSF	8	Unmodified	_KLHVKKSF_					0	0	0			REV__ENSG00000182348|ENST00000333190|ZNF804B	REV__ENSG00000182348|ENST00000333190|ZNF804B	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.8109436035156	2	493.810919	985.607286	0.11226	5.5436E-05	-4.3505	-0.0021483	-4.2382	-0.0020929	493.80859966102537	22.845	0.9819	21.451	20.923	21.905	-1.3935					59	28	3	0	0	0	0.73494	1	319	319		34.173	2.2177	1	52229	+		24263	22286	19844	19868	27001	27001					0.11390647302084744
KLHVLRVM	8	Unmodified	_KLHVLRVM_					0	0	0		ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	497.759033203125	2	498.312772	994.610991	-0.3751	-0.00018692	0.76412	0.00038077	0.38902	0.00019386	498.3132200230473	64.296	0.89581	61.571	61.337	62.233	-2.7245					27	16	2	0	0	0	0.028476	1	4967	4967		19.36	5.5846	1	22955			24264	4537	19845	19869	27002	27002					0.1134699380429538
KLIANPRKSTY	11	Unmodified	_KLIANPRKSTY_					0	0	0			REV__nc|ENSG00000162889|P49137-2|MAPKAPK2	REV__nc|ENSG00000162889|P49137-2|MAPKAPK2	MULTI-MSMS	OvCa9_classI_Rep2	2	430.9221496582031	3	430.922467	1289.74557	-1.0961	-0.00047232	0.83487	0.00035976	-0.2612	-0.00011256	430.92278140988134	57.145	1.0916	54.353	53.981	55.072	-2.792					67	21	4	0	0	0	0.62561	1	4051	4051		42.338	4.7382	1	300550	+		24265	20788	19846	19870	27003	27003					0.11228725759883673
KLIAPHIN	8	Unmodified	_KLIAPHIN_					0	0	0			REV__tr|A0A7D6ZTI5|A0A7D6ZTI5_9CLOTGlycine/betaineABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11410PE=4SV=1	REV__tr|A0A7D6ZTI5|A0A7D6ZTI5_9CLOTGlycine/betaineABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11410PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	453.77447509765625	2	453.281995	904.549437	-0.00035122	-1.592E-07	0.17596	7.976E-05	0.17561	7.9601E-05	453.2819272669251	91.801	1.2641	89.259	88.862	90.126	-2.5425					32	24	2	0	0	0	0.028476	1	7992	7992		38.806	20.482	1	24901	+		24266	32205	19847	19871	27004	27004					0.09334385376655518
KLIAPHIN	8	Unmodified	_KLIAPHIN_					0	0	0			REV__tr|A0A7D6ZTI5|A0A7D6ZTI5_9CLOTGlycine/betaineABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11410PE=4SV=1	REV__tr|A0A7D6ZTI5|A0A7D6ZTI5_9CLOTGlycine/betaineABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11410PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	453.281995	904.549437	3.4003	0.0015413	-3.3514	-0.0015191	0.04894	2.2183E-05	453.2803471588327	90.588	1.4726	89.286	88.68	90.153	-1.302	0.013907	-0.0015911	NaN	23.042	36	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20192	+		24267	32205	19847	19871							0.09334385376655518
KLIDDVHRL	9	Unmodified	_KLIDDVHRL_					0	0	0		ENSG00000182934|ENST00000332118|SRPRA;nc|ENSG00000182934|P08240-2|SRPRA;ENST00000528744.5_1_11:126137442-126138699:-|nuORF	ENSG00000182934|ENST00000332118|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	MULTI-MSMS	OvCa99_classI_Rep5	1	554.8282470703125	2	554.827298	1107.64004	0.29361	0.0001629	0.17843	9.8996E-05	0.47204	0.0002619	554.8270827714186	62.837	1.397	62.837	62.335	63.732	0					87	34	5	0	0	0	0.14445	1	5628	5628		85.862	9.6921	1	4265300			24268	8040	19848	19872	27005	27005					0.09052809634272307
KLIDDVLKLF	10	Unmodified	_KLIDDVLKLF_					0	0	0			REV__RAB12|p.L224Vfs*11|1|0.06|ENSG00000206418|chr18:8638195-8638196|-/TGTTGTTTCCTTTATT|frameshift_variant	REV__RAB12|p.L224Vfs*11|1|0.06|ENSG00000206418|chr18:8638195-8638196|-/TGTTGTTTCCTTTATT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	602.3137817382812	2	602.371007	1202.72746	1.9267	0.0011606	1.3629	0.00082099	3.2896	0.0019816	602.3716659128945	125.45	0.72849	125.45	125.17	125.9	0					31	17	2	0	0	0	0.026714	1	14507	14507		42.864	16.171	1	108900	+		24269	29327	19849	19873	27006	27006					0.134205907851765
KLIDKGIIHS	10	Unmodified	_KLIDKGIIHS_					0	0	0			REV__MARS2|p.I469Afs*37|1|0.05|ENSG00000247626|chr2:197706809-197706810|-/GCAACGTGGTGGATCCTAGGACTTGCCTT|frameshift_variant	REV__MARS2|p.I469Afs*37|1|0.05|ENSG00000247626|chr2:197706809-197706810|-/GCAACGTGGTGGATCCTAGGACTTGCCTT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	562.3428955078125	2	562.345323	1122.67609	-1.142	-0.00064221	-2.621	-0.0014739	-3.7631	-0.0021161	562.3438081477608	141.84	4.7959	141.62	140.24	145.03	-0.22697					133	96	2	0	0	0	0.7759	1	14338	14338		21.96	2.5999	1	113870	+		24270	23482	19850	19874	27007	27007					0.11966266811123205
KLIDKLDSL	9	Unmodified	_KLIDKLDSL_					0	0	0		DOCK4|p.F1456Lfs*4|1|0.11|ENSG00000128512|chr7:111755521-111755536|ACGCTTTTCCACTTCA/-|frameshift_variant;ENST00000469898.1_7:111428716-111462476:-|nuORF;nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4	DOCK4|p.F1456Lfs*4|1|0.11|ENSG00000128512|chr7:111755521-111755536|ACGCTTTTCCACTTCA/-|frameshift_variant;nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MSMS	OvCa99_classI_Rep5	1	522.8200073242188	2	522.818607	1043.62266	1.9545	0.0010219	0.24904	0.0001302	2.2036	0.0011521	522.8186719951489	86.17	0.43572	86.17	85.954	86.389	0					26	10	3	0	0	0	0.010153	1	9077	9077		168.26	23.103	1	7669300			24271	3882;758	19851	19875	27008	27008					0.10259469308630287
KLIDLEHLL	9	Unmodified	_KLIDLEHLL_					0	0	0		RNF168|p.L448Yfs*40|1|0.04|ENSG00000163961|chr3:196472192-196472192|A/-|frameshift_variant;ENSG00000163961|ENST00000318037|RNF168	RNF168|p.L448Yfs*40|1|0.04|ENSG00000163961|chr3:196472192-196472192|A/-|frameshift_variant	RNF168|p.L448Yfs*40|1|0.04|ENSG00000163961|chr3:196472192-196472192|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	547.3330078125	2	547.334424	1092.6543	2.3462	0.0012842	-0.64381	-0.00035238	1.7024	0.00093177	547.3337447397606	121.2	1.1622	121.2	120.97	122.13	0					33	25	2	0	0	0	0.16562	1	13943	13943		82.241	0	1	337350			24272	6389	19852	19876	27009	27009					0.11167462062553568
KLIDRNWDL	9	Unmodified	_KLIDRNWDL_					0	0	0			REV__ENSG00000117115|ENST00000375486|PADI2	REV__ENSG00000117115|ENST00000375486|PADI2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	587.815185546875	2	586.824755	1171.63496	-1.0593	-0.00062163	-0.16931	-9.9356E-05	-1.2286	-0.00072098	586.8243481614857	99.448	1.8494	97.123	96.382	98.231	-2.3253					88	35	4	0	0	0	0.027462	1	8889	8889		19.104	3.4617	1	106590	+		24273	18337	19853	19877	27010	27010					0.056005057716674855
KLIDRTESL	9	Unmodified	_KLIDRTESL_					0	0	0		nc|ENSG00000130592|P33241-2|LSP1;ENST00000485341.5_1_11:1902588-1908790:+|nuORF;ENSG00000130592|ENST00000311604|LSP1;nc|ENSG00000130592|P33241-3|LSP1	nc|ENSG00000130592|P33241-2|LSP1	nc|ENSG00000130592|P33241-2|LSP1	MULTI-MSMS	OvCa99_classI_Rep5	1	537.8134765625	2	537.811313	1073.60807	-0.24243	-0.00013038	-0.38093	-0.00020487	-0.62336	-0.00033525	537.8111068128071	58.754	0.63708	58.754	58.446	59.083	0					52	15	4	0	0	0	0.020196	1	5008	5008		146.79	1.6297	1	16547000			24274	3996	19854	19878	27011	27011					0.07421397160464949
KLIEFKVEY	9	Unmodified	_KLIEFKVEY_					0	0	0			REV__ENST00000568690.1_1_15:30771297-30773124:+|nuORF	REV__ENST00000568690.1_1_15:30771297-30773124:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.8342895507812	2	584.834257	1167.65396	-0.062285	-3.6426E-05	-0.25124	-0.00014693	-0.31352	-0.00018336	584.8339486728624	111.14	1.9383	109.54	109.07	111.01	-1.6011					92	34	4	0	0	0	0.42576	1	10262	10262		49.536	6.6718	1	334470	+		24275	20469	19855	19879	27012	27012					0.07684042342725661
KLIEFLLKA	9	Unmodified	_KLIEFLLKA_					0	0	0		nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3	nc|ENSG00000110075|Q5H9R7-3|PPP6R3	nc|ENSG00000110075|Q5H9R7-3|PPP6R3	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.3160400390625	2	537.84971	1073.68487	1.5087	0.00081144	-3.7243	-0.0020031	-2.2157	-0.0011917	537.8473104530955	70.58	1.5629	67.86	67.648	69.211	-2.7196					47	30	2	0	0	0	0.027402	1	3379	3379		56.721	10.769	1	62554			24276	2754	19856	19880	27013	27013					0.15097240447607874
KLIEKLDIKL	10	Unmodified	_KLIEKLDIKL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OvCa99_classI_Rep5	1	404.9367980957031	3	404.935713	1211.78531	4.8517	0.0019646	-2.1774	-0.00088172	2.6743	0.0010829	404.93476296592263	88.443	0.6312	88.443	88.212	88.843	0					34	14	3	0	0	0	0.015511	1	9401	9401		153.1	2.9501	1	1860100			24277	6826	19857	19881	27014	27014					0.18788852710599713
KLIFEFLNKFV	11	Unmodified	_KLIFEFLNKFV_					0	0	0			REV__tr|A0A7D6ZX25|A0A7D6ZX25_9CLOTProteintranslocasesubunitSecEOS=ClostridiumintestinaleOX=36845GN=secEPE=3SV=1	REV__tr|A0A7D6ZX25|A0A7D6ZX25_9CLOTProteintranslocasesubunitSecEOS=ClostridiumintestinaleOX=36845GN=secEPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	466.608154296875	3	466.611229	1396.81186	-6.6027	-0.0030809	-0.40685	-0.00018984	-7.0095	-0.0032707	466.61096806232865	159.04	3.2002	157.77	156.69	159.89	-1.267					192	69	4	0	0	0	0.72488	1	13759	13759		17.167	0	1	106530	+		24278	32311	19858	19882	27015	27015					0.12932541601935554
KLIFHGPFVD	10	Unmodified	_KLIFHGPFVD_					0	0	0			REV__ENSG00000086570|ENST00000261800|FAT2	REV__ENSG00000086570|ENST00000261800|FAT2	MULTI-MSMS	OvCa9_classI_Rep3	3	586.8231201171875	2	586.826766	1171.63898	-5.6686	-0.0033265	0.20936	0.00012286	-5.4592	-0.0032036	586.8267226357335	149.07	1.5069	148.12	147.65	149.16	-0.9512					81	29	4	0	0	0	0.72319	1	12602	12602		27.882	1.1893	1	213470	+		24279	17150	19859	19883	27016	27016					0.060025952653631975
KLIGEYGLRNK	11	Unmodified	_KLIGEYGLRNK_					0	0	0		ENSG00000170889|ENST00000302907|RPS9;ENST00000460761.1_1_19:54705052-54705521:+|nuORF	ENSG00000170889|ENST00000302907|RPS9	ENSG00000170889|ENST00000302907|RPS9	MULTI-MSMS	OvCa9_classI_Rep2	2	430.92266845703125	3	430.922467	1289.74557	-1.0961	-0.00047232	0.83487	0.00035976	-0.2612	-0.00011256	430.92278140988134	57.145	1.0916	54.353	53.981	55.072	-2.792					67	21	4	0	0	0	0.45478	4	4056	4056;4061;4067;4074		57.149	8.3858	1	300550			24280	7148	19860	19884	27017;27018;27019;27020	27017					0.11228725759883673
KLIGEYGLRNK	11	Unmodified	_KLIGEYGLRNK_					0	0	0		ENSG00000170889|ENST00000302907|RPS9;ENST00000460761.1_1_19:54705052-54705521:+|nuORF	ENSG00000170889|ENST00000302907|RPS9	ENSG00000170889|ENST00000302907|RPS9	MULTI-MSMS	OvCa9_classI_Rep4_	4	430.92352294921875	3	430.922467	1289.74557	0.78234	0.00033713	-1.7161	-0.00073952	-0.93379	-0.00040239	430.9219248375659	57.916	1.5108	54.571	54.291	55.802	-3.3449					65	29	3	0	0	0	0.43443	1	3790	3790		58.63	12.721	1	412240			24281	7148	19860	19884	27021	27021					0.11228725759883673
KLIGQVHEV	9	Unmodified	_KLIGQVHEV_					0	0	0		ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MULTI-MSMS	OvCa99_classI_Rep5	1	511.8039245605469	2	511.803291	1021.59203	-0.67421	-0.00034506	0.48254	0.00024697	-0.19167	-9.8097E-05	511.8034229449777	53.505	1.1737	53.505	52.956	54.13	0					50	27	3	0	0	0	0.070405	1	4253	4253		107.01	24.702	1	2337900			24282	1503	19861	19885	27022	27022					0.08209735714228827
KLIHTKLRS	9	Unmodified	_KLIHTKLRS_					0	0	0			REV__ENSG00000148143|ENST00000277225|ZNF462	REV__ENSG00000148143|ENST00000277225|ZNF462	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.354736328125	2	548.353483	1094.69241	-0.42991	-0.00023574	0.080096	4.3921E-05	-0.34982	-0.00019182	548.3534240706001	98.665	1.4433	96.286	95.971	97.414	-2.3786					78	27	3	0	0	0	0.50149	1	8787	8787		42.396	1.618	1	478150	+		24283	20090	19862	19886	27023	27023					0.14885392767882877
KLIHTKLRS	9	Unmodified	_KLIHTKLRS_					0	0	0			REV__ENSG00000148143|ENST00000277225|ZNF462	REV__ENSG00000148143|ENST00000277225|ZNF462	MULTI-MATCH	OvCa9_classI_Rep3	3		2	548.353483	1094.69241	-0.83502	-0.00045789	0.21333	0.00011698	-0.62169	-0.00034091	548.3535191856596	98.08	1.8963	96.32	95.962	97.858	-1.7595	0.017106	6.2305E-05	NaN	42.396	93	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	527430	+		24284	20090	19862	19886							0.14885392767882877
KLIIHQTLS	9	Unmodified	_KLIIHQTLS_					0	0	0		nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-MSMS	OvCa9_classI_Rep2	2	526.825439453125	2	526.826766	1051.63898	-1.2645	-0.00066616	0.28089	0.00014798	-0.98358	-0.00051818	526.8270166019133	100.56	1.3878	99.727	99.36	100.75	-0.83051					64	27	4	0	0	0	0.53483	1	9209	9209		39.253	0.23134	1	388760			24285	6983	19863	19887	27024	27024					0.11522595265364544
KLIKDGLII	9	Unmodified	_KLIKDGLII_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000580333.1_1_17:37356597-37358721:+|nuORF;ENST00000577741.1_1_17:37358445-37358721:+|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	OvCa99_classI_Rep5	1	506.84295654296875	2	506.841885	1011.66922	3.2589	0.0016518	-1.1434	-0.00057952	2.1155	0.0010722	506.841159841659	88.505	0.98004	88.505	88.255	89.235	0					59	23	4	0	0	0	0.094616	1	9402	9402		98.629	5.4339	1	3509200			24286	2643	19864	19888	27025	27025					0.16384953930560187
KLIKDGLIIRK	11	Unmodified	_KLIKDGLIIRK_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000580333.1_1_17:37356597-37358721:+|nuORF;ENST00000577741.1_1_17:37358445-37358721:+|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	OvCa9_classI_Rep2	2	432.961669921875	3	432.962374	1295.86529	-0.835	-0.00036153	0.69435	0.00030063	-0.14065	-6.0898E-05	432.9625974184733	60.349	1.3184	57.578	57.291	58.609	-2.7702					75	24	4	0	0	0	0.19299	1	4447	4447		80.916	39.836	1	303120			24287	2643	19865	19889	27026	27026					0.2291933910444186
KLIKDGLIIRK	11	Unmodified	_KLIKDGLIIRK_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000580333.1_1_17:37356597-37358721:+|nuORF;ENST00000577741.1_1_17:37358445-37358721:+|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	OvCa9_classI_Rep3	3	432.96221923828125	3	432.962374	1295.86529	2.1789	0.00094336	-2.2987	-0.00099525	-0.11984	-5.1887E-05	432.96131184103564	61.467	0.85169	58.398	58.208	59.059	-3.0685					59	23	3	0	0	0	0.54114	1	2157	2157		50.034	19.465	1	69266			24288	2643	19865	19889	27027	27027					0.2291933910444186
KLIKDGLIIRK	11	Unmodified	_KLIKDGLIIRK_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000580333.1_1_17:37356597-37358721:+|nuORF;ENST00000577741.1_1_17:37358445-37358721:+|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MATCH	OvCa9_classI_Rep2	2		3	432.962374	1295.86529	-1.3146	-0.00056918	0.92775	0.00040168	-0.38686	-0.0001675	433.29713634021243	61.433	0.20908	58.674	58.568	58.777	-2.7593	0.13768	0.0041008	NaN	50.034	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5545.7			24289	2643	19865	19889							0.2291933910444186
KLIKLNTD	8	Unmodified	_KLIKLNTD_					0	0	0			REV__ENST00000263904.4_1_2:152976975-152977068:-|nuORF	REV__ENST00000263904.4_1_2:152976975-152977068:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.76458740234375	2	472.792392	943.570232	-0.60094	-0.00028412	-0.8988	-0.00042495	-1.4997	-0.00070907	472.7925694229824	39.787	0.46897	39.787	39.547	40.016	0					20	10	3	0	0	0	0.028476	1	2380	2380		40.573	0	1	272200	+		24290	24010	19866	19890	27028	27028					0.0961893096566655
KLIKVKDAPEA	11	Unmodified	_KLIKVKDAPEA_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.369140625	2	606.371538	1210.72852	-1.3399	-0.00081245	-1.8512	-0.0011225	-3.191	-0.001935	606.3703052098949	148.27	2.4393	146.84	145.43	147.87	-1.4351					149	49	5	0	0	0	0.71789	1	14528	14528		23.523	6.0547	1	591330	+		24291	20262	19867	19891	27029	27029					0.13158805154080255
KLIKYATDS	9	Unmodified	_KLIKYATDS_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.D1429Afs*26|1|0.04|ENSG00000175054|chr3:142519765-142519765|T/-|frameshift_variant	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	OvCa9_classI_Rep2	2	519.7937622070312	2	519.795132	1037.57571	-0.83173	-0.00043233	-1.6752	-0.00087074	-2.5069	-0.0013031	519.7941003158112	120.39	3.5079	120.22	119.69	123.2	-0.17137					148	70	4	0	0	0	0.12515	1	11597	11597		90.37	5.4543	1	553870			24292	7509	19868	19892	27030	27030					0.058426097574511004
KLIKYATDS	9	Unmodified	_KLIKYATDS_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR;ATR|p.D1429Afs*26|1|0.04|ENSG00000175054|chr3:142519765-142519765|T/-|frameshift_variant	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	OvCa9_classI_Rep3	3	519.7935180664062	2	519.795132	1037.57571	1.5307	0.00079564	-4.1853	-0.0021755	-2.6546	-0.0013798	519.7927708482009	121.53	4.9018	120.5	119.85	124.76	-1.0286					197	93	4	0	0	0	0.27001	1	9298	9298		66.429	2.222	1	827300			24293	7509	19868	19892	27031	27031					0.058426097574511004
KLILFFKR	8	Unmodified	_KLILFFKR_					0	0	0		nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-3|NCOR1;NCOR1|p.K1319Lfs*17|1|0.08|ENSG00000141027|chr17:16071606-16071607|-/CATGCAGTGTGGACCTAAG|frameshift_variant	nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	MULTI-SECPEP	OvCa9_classI_Rep3	3	533.8087768554688	2	532.852587	1063.69062	-0.17362	-9.2512E-05	-3.9445	-0.0021018	-4.1181	-0.0021943	532.8501066067888	95.259	1.2887	93.364	92.964	94.253	-1.8956					31	25	2	0	0	0	0.028476	1	6258	6258		42.474	13.325	1	78452			24294	4891	19869	19893	27032	27032					0.16132383749936707
KLILFFKR	8	Unmodified	_KLILFFKR_					0	0	0		nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-3|NCOR1;NCOR1|p.K1319Lfs*17|1|0.08|ENSG00000141027|chr17:16071606-16071607|-/CATGCAGTGTGGACCTAAG|frameshift_variant	nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.8095092773438	2	532.852587	1063.69062	-1.6922	-0.00090171	-2.4227	-0.001291	-4.115	-0.0021927	532.8507564316333	95.946	1.1656	93.521	93.055	94.22	-2.4256					30	22	2	0	0	0	0.028476	1	8484	8484		42.474	13.325	1	64373			24295	4891	19869	19893	27033	27033					0.16132383749936707
KLILHILPTL	10	Unmodified	_KLILHILPTL_					0	0	0			REV__ENST00000433116.2_1_12:69079612-69079708:-|nuORF	REV__ENST00000433116.2_1_12:69079612-69079708:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.8565673828125	2	580.891909	1159.76927	1.6634	0.00096627	-2.1652	-0.0012578	-0.50182	-0.0002915	580.8924875795775	102.95	0.29202	102.95	102.81	103.1	0					10	6	2	0	0	0	0.027363	1	11501	11501		6.3127	0.39155	1	87398	+		24296	25742	19870	19894	27034	27034					0.1957719126437496
KLILIINEP	9	Unmodified	_KLILIINEP_					0	0	0			REV__ENSG00000138246|ENST00000260818|DNAJC13	REV__ENSG00000138246|ENST00000260818|DNAJC13	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.2986450195312	2	526.839342	1051.66413	1.1246	0.00059249	0.47069	0.00024798	1.5953	0.00084046	526.8394951117191	111.74	0.64056	111.74	111.42	112.06	0					20	13	2	0	0	0	0.027462	1	12709	12709		42.396	26.754	1	105390	+		24297	19523	19871	19895	27035	27035					0.14036650067941991
KLILIQYGTT	10	Unmodified	_KLILIQYGTT_					0	0	0			REV__ENSG00000244234|ENST00000463439|GMCL2	REV__ENSG00000244234|ENST00000463439|GMCL2	MULTI-MSMS	OvCa9_classI_Rep3	3	575.3457641601562	2	575.347532	1148.68051	-6.2917	-0.0036199	2.5771	0.0014827	-3.7146	-0.0021372	575.3489585356984	154.97	1.0558	153.9	153.56	154.61	-1.073					68	25	4	0	0	0	0.73378	1	13346	13346		26.693	3.1702	1	137860	+		24298	23474	19872	19896	27036	27036					0.1121173123403878
KLILLDKLL	9	Unmodified	_KLILLDKLL_					0	0	0		nc|ENSG00000173575|O14647-2|CHD2;ENSG00000173575|ENST00000394196|CHD2;nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1	nc|ENSG00000173575|O14647-2|CHD2;nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000173575|O14647-2|CHD2	MULTI-MSMS	OvCa99_classI_Rep5	1	534.8748168945312	2	534.873185	1067.73182	2.0482	0.0010955	0.23411	0.00012522	2.2823	0.0012207	534.8732008167726	117.78	0.64911	117.78	117.51	118.16	0					26	13	3	0	0	0	0.42676	1	13511	13511		49.442	1.7842	1	137030			24299	7391;5701	19873	19897	27037	27037					0.200660999987349
KLILLITQV	9	Unmodified	_KLILLITQV_					0	0	0		ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	MULTI-MSMS	OvCa99_classI_Rep5	1	520.8583374023438	2	520.857535	1039.70052	1.2127	0.00063167	0.43012	0.00022403	1.6429	0.0008557	520.8575642187827	125.52	1.0096	125.52	125.17	126.18	0					56	23	4	0	0	0	0.1574	1	14490	14490		83.647	10.768	1	695400			24300	6362	19874	19898	27038	27038					0.18225526964647543
KLILLITQV	9	Unmodified	_KLILLITQV_					0	0	0		ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	MULTI-MATCH	OvCa9_classI_Rep2	2		2	520.857535	1039.70052	0.90515	0.00047145	-1.6143	-0.00084081	-0.70914	-0.00036936	520.8565184288738	125.69	0.6438	125.46	125.26	125.9	-0.2359	-0.030375	-0.00172	NaN	83.647	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17877			24301	6362	19874	19898							0.18225526964647543
KLIMKLQVL	9	Unmodified	_KLIMKLQVL_					0	0	0		ENST00000311893.13_1_12:108962937-108963123:+|nuORF	ENST00000311893.13_1_12:108962937-108963123:+|nuORF	ENST00000311893.13_1_12:108962937-108963123:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	543.3589477539062	2	543.359388	1084.70422	0.56167	0.00030519	-1.8779	-0.0010204	-1.3163	-0.00071521	543.3581475659229	81.331	0.61545	81.331	81.12	81.736	0					33	14	4	0	0	0	0.29717	1	8381	8381		63.306	2.3343	1	3270500			24302	10302	19875	19899	27039	27039					0.1652587346686687
KLINLILALV	10	Unmodified	_KLINLILALV_					0	0	0			REV__nc|ENSG00000100031|P19440-2|GGT1	REV__nc|ENSG00000100031|P19440-2|GGT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.2858276367188	2	555.38646	1108.75837	0.46857	0.00026024	-2.3909	-0.0013279	-1.9223	-0.0010676	555.3850363910287	73.992	0.49765	73.992	73.597	74.095	0					21	12	2	0	0	0	0.027088	1	7278	7278		19.997	0	1	385950	+		24303	17355	19876	19900	27040	27040					0.2083378889008145
KLIPGLWRL	9	Unmodified	_KLIPGLWRL_					0	0	0		ENST00000417220.6_1_3:51976550-51976622:+|nuORF	ENST00000417220.6_1_3:51976550-51976622:+|nuORF	ENST00000417220.6_1_3:51976550-51976622:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.3543090820312	2	548.355494	1094.69644	-0.61711	-0.0003384	-2.8683	-0.0015728	-3.4854	-0.0019112	548.3537278513091	82.828	1.3158	80.145	79.782	81.098	-2.683					60	26	3	0	0	0	0.56889	1	6862	6862		35.618	8.571	1	233300			24304	11620	19877	19901	27041	27041					0.15287482261601326
KLIPGLWRL	9	Unmodified	_KLIPGLWRL_					0	0	0		ENST00000417220.6_1_3:51976550-51976622:+|nuORF	ENST00000417220.6_1_3:51976550-51976622:+|nuORF	ENST00000417220.6_1_3:51976550-51976622:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	548.355494	1094.69644	-1.4489	-0.00079449	-2.448	-0.0013424	-3.8969	-0.0021369	548.353942910715	82.598	1.5555	80.302	79.887	81.443	-2.2963	0.078564	0.0002332	NaN	35.618	66	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302900			24305	11620	19877	19901							0.15287482261601326
KLIPLLLQL	9	Unmodified	_KLIPLLLQL_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;ENST00000566823.1_1_16:14982940-14989499:+|nuORF;NOMO1|p.D1178E|1|0.07|ENSG00000103512|chr16:14895087-14895087|C/G|missense_variant;ENST00000570346.1_2_16:16387929-16388153:+|nuORF	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	OvCa99_classI_Rep5	1	525.869873046875	2	525.867903	1049.72125	1.0994	0.00057812	1.3354	0.00070222	2.4347	0.0012803	525.8684810341905	146.94	1.0281	146.94	146.62	147.65	0					55	20	4	0	0	0	0.023304	2	17190	17190;17214		143.11	31.459	1	839060			24306	2296	19878	19902	27042;27043	27042					0.19838117344329476
KLIPQLPTL	9	Unmodified	_KLIPQLPTL_					0	0	0		ENSG00000116954|ENST00000373001|RRAGC;nc|ENSG00000025039|Q9NQL2-2|RRAGD;ENSG00000025039|ENST00000369415|RRAGD;ENST00000496778.1_1_1:39317285-39318153:-|nuORF	ENSG00000116954|ENST00000373001|RRAGC	ENSG00000116954|ENST00000373001|RRAGC	MULTI-MSMS	OvCa99_classI_Rep5	1	511.8359375	2	511.83406	1021.65357	2.017	0.0010324	0.27295	0.0001397	2.29	0.0011721	511.83395881141035	120.27	0.51824	120.27	120	120.52	0					29	12	3	0	0	0	0.13504	1	13808	13808		87.696	13.722	1	1280600			24307	3220	19879	19903	27044	27044					0.14360667413507144
KLIPQLPTL	9	Unmodified	_KLIPQLPTL_					0	0	0		ENSG00000116954|ENST00000373001|RRAGC;nc|ENSG00000025039|Q9NQL2-2|RRAGD;ENSG00000025039|ENST00000369415|RRAGD;ENST00000496778.1_1_1:39317285-39318153:-|nuORF	ENSG00000116954|ENST00000373001|RRAGC	ENSG00000116954|ENST00000373001|RRAGC	MULTI-MSMS	OvCa9_classI_Rep2	2	511.8343505859375	2	511.83406	1021.65357	-1.42	-0.00072679	1.3178	0.00067448	-0.1022	-5.2308E-05	511.8346397517639	119.73	1.6768	119.56	119.2	120.88	-0.17137					73	33	3	0	0	0	0.16562	4	11533	11514;11526;11533;11539		82.241	24.208	1	140360			24308	3220	19879	19903	27045;27046;27047;27048	27047					0.14360667413507144
KLIPQLPTL	9	Unmodified	_KLIPQLPTL_					0	0	0		ENSG00000116954|ENST00000373001|RRAGC;nc|ENSG00000025039|Q9NQL2-2|RRAGD;ENSG00000025039|ENST00000369415|RRAGD;ENST00000496778.1_1_1:39317285-39318153:-|nuORF	ENSG00000116954|ENST00000373001|RRAGC	ENSG00000116954|ENST00000373001|RRAGC	MULTI-MSMS	OvCa9_classI_Rep3	3	511.8344421386719	2	511.83406	1021.65357	1.329	0.00068021	-1.5308	-0.00078349	-0.20179	-0.00010329	511.83313480518876	120.77	1.853	119.74	119.36	121.22	-1.0271					82	35	4	0	0	0	0.064985	5	9242	9217;9223;9229;9236;9242		110.12	33.346	1	259440			24309	3220	19879	19903	27049;27050;27051;27052;27053	27053					0.14360667413507144
KLIPQLPTL	9	Unmodified	_KLIPQLPTL_					0	0	0		ENSG00000116954|ENST00000373001|RRAGC;nc|ENSG00000025039|Q9NQL2-2|RRAGD;ENSG00000025039|ENST00000369415|RRAGD;ENST00000496778.1_1_1:39317285-39318153:-|nuORF	ENSG00000116954|ENST00000373001|RRAGC	ENSG00000116954|ENST00000373001|RRAGC	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.8338928222656	2	511.83406	1021.65357	-0.64714	-0.00033123	0.59425	0.00030416	-0.052883	-2.7067E-05	511.83421414075224	121.11	2.1319	119.76	119.34	121.47	-1.3479					84	41	3	0	0	0	0.12515	5	11403	11382;11403;11415;11428;11440		90.37	39.034	1	241570			24310	3220	19879	19903	27054;27055;27056;27057;27058	27055					0.14360667413507144
KLIQLQFEV	9	Unmodified	_KLIQLQFEV_					0	0	0		ENST00000393179.8_1_12:89885842-89919131:-|nuORF	ENST00000393179.8_1_12:89885842-89919131:-|nuORF	ENST00000393179.8_1_12:89885842-89919131:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	559.8353881835938	2	559.334424	1116.6543	1.7319	0.0009687	-0.28613	-0.00016005	1.4457	0.00080866	559.3342791783701	119.35	0.63873	119.35	119.15	119.79	0					32	15	4	0	0	0	0.2077	2	13716	13699;13716		75.043	14.071	1	615160			24311	11241	19880	19904	27059;27060	27060					0.10063462062544204
KLIREECAEP	10	Unmodified	_KLIREECAEP_					0	0	0			REV__ENST00000513432.5_1_18:13059017-13124766:+|nuORF	REV__ENST00000513432.5_1_18:13059017-13124766:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.8221435546875	2	594.308081	1186.60161	1.6079	0.00095557	-2.0373	-0.0012108	-0.42939	-0.00025519	594.8087162093769	112.07	1.0096	112.07	111.47	112.48	0					29	21	2	0	0	0	0.026931	1	12746	12746		23.523	4.1627	1	85527	+		24312	17510	19881	19905	27061	27061					0.015771359374411986
KLISELQKL	9	Unmodified	_KLISELQKL_					0	0	0		RIF1|p.L2186Qfs*51|1|0.07|ENSG00000080345|chr2:151466077-151466077|T/-|frameshift_variant;nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1;ENST00000498041.1_1_2:152276743-152279974:+|nuORF	RIF1|p.L2186Qfs*51|1|0.07|ENSG00000080345|chr2:151466077-151466077|T/-|frameshift_variant	RIF1|p.L2186Qfs*51|1|0.07|ENSG00000080345|chr2:151466077-151466077|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	536.343505859375	2	536.342249	1070.66995	2.2668	0.0012158	-0.1499	-8.0397E-05	2.1169	0.0011354	536.3420220027116	80.589	0.84849	80.589	80.314	81.162	0					38	19	3	0	0	0	0.047422	1	8268	8268		120.31	10.828	1	1265800			24313	1634	19882	19906	27062	27062					0.1374374857962266
KLISILTGLV	10	Unmodified	_KLISILTGLV_					0	0	0			REV__ENSG00000180638|ENST00000433844|SLC47A2	REV__ENSG00000180638|ENST00000433844|SLC47A2	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.7960815429688	2	528.854993	1055.69543	-0.49347	-0.00026098	0.013544	7.1627E-06	-0.47993	-0.00025381	528.8548216890445	97.215	1.2282	96.257	96.019	97.247	-0.95856					53	24	3	0	0	0	0.027021	1	8911	8911		37.159	8.0096	1	72138	+		24314	22183	19883	19907	27063	27063					0.16981223102015974
KLISSAKQV	9	Unmodified	_KLISSAKQV_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OvCa99_classI_Rep5	1	487.30548095703125	2	487.305667	972.596781	-0.83257	-0.00040572	0.077515	3.7773E-05	-0.75506	-0.00036794	487.30555459261933	39.832	0.62471	39.832	39.669	40.294	0					35	13	4	0	0	0	0.1149	1	2374	2374		93.143	0	1	1898700			24315	4552;7248	19884	19908	27064	27064					0.10938619856995047
KLITFLAF	8	Unmodified	_KLITFLAF_					0	0	0			REV__ENSG00000197938|ENST00000355273|OR5H2	REV__ENSG00000197938|ENST00000355273|OR5H2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.7736511230469	2	476.796946	951.57934	-0.079887	-3.809E-05	-4.052	-0.001932	-4.1319	-0.0019701	476.7946843695013	74.188	0.95502	70.957	70.723	71.678	-3.2308					36	19	3	0	0	0	0.028476	1	5776	5776		12.959	0	1	63356	+		24316	22969	19885	19909	27065	27065					0.10161324321984466
KLIVLDPKK	9	Unmodified	_KLIVLDPKK_					0	0	0		ENSG00000152495|ENST00000282356|CAMK4	ENSG00000152495|ENST00000282356|CAMK4	ENSG00000152495|ENST00000282356|CAMK4	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.3543090820312	2	527.35516	1052.69577	2.005	0.0010573	-1.8912	-0.00099732	0.11383	6.0028E-05	527.3539674551008	135.6	1.3745	134.05	133.71	135.08	-1.5437					52	27	3	0	0	0	0.68424	1	13118	13118		21.96	1.9631	1	89870			24317	5628	19886	19910	27066	27066					0.17152642821906738
KLIVNVPKP	9	Unmodified	_KLIVNVPKP_					0	0	0		MCM8-DNAJC21|1|fusion;MCM8-DNAJC21|2|fusion	MCM8-DNAJC21|1|fusion	MCM8-DNAJC21|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.31268310546875	2	504.334227	1006.6539	-0.82054	-0.00041383	0.5855	0.00029529	-0.23504	-0.00011854	504.3344498415299	82.783	1.1238	80.1	79.733	80.857	-2.6829					29	22	2	0	0	0	0.027462	1	6929	6929		26.693	5.746	1	27730			24318	14825	19887	19911	27067	27067					0.15084087133368485
KLIVNVPKP	9	Unmodified	_KLIVNVPKP_					0	0	0		MCM8-DNAJC21|1|fusion;MCM8-DNAJC21|2|fusion	MCM8-DNAJC21|1|fusion	MCM8-DNAJC21|1|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	504.334227	1006.6539	-0.04913	-2.4778E-05	-0.14441	-7.2832E-05	-0.19354	-9.761E-05	504.33405691735464	81.711	0.88182	80.063	79.818	80.7	-1.6485	-0.071147	-0.00053321	NaN	26.693	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25658			24319	14825	19887	19911							0.15084087133368485
KLIVNVPKP	9	Unmodified	_KLIVNVPKP_					0	0	0		MCM8-DNAJC21|1|fusion;MCM8-DNAJC21|2|fusion	MCM8-DNAJC21|1|fusion	MCM8-DNAJC21|1|fusion	MULTI-MATCH	OvCa9_classI_Rep3	3		2	504.334227	1006.6539	-1.4034	-0.0007078	0.87819	0.0004429	-0.52524	-0.0002649	504.33466359828253	82.535	0.94392	80.239	79.938	80.882	-2.2963	0.10496	0.00049826	NaN	26.693	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33087			24320	14825	19887	19911							0.15084087133368485
KLIWLSGVL	9	Unmodified	_KLIWLSGVL_					0	0	0			REV__tr|A0A553SRE9|A0A553SRE9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00870PE=4SV=1	REV__tr|A0A553SRE9|A0A553SRE9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00870PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	514.827880859375	2	514.828778	1027.643	-1.1684	-0.00060151	-3.1244	-0.0016085	-4.2928	-0.00221	514.8270335492895	70.166	0.84109	70.166	69.84	70.681	0					44	19	4	0	0	0	0.31747	1	6721	6721		60.972	4.2509	1	2556700	+		24321	30725	19888	19912	27068	27068					0.13028684759092357
KLIWLSGVL	9	Unmodified	_KLIWLSGVL_					0	0	0			REV__tr|A0A553SRE9|A0A553SRE9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00870PE=4SV=1	REV__tr|A0A553SRE9|A0A553SRE9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00870PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.76318359375	2	514.828778	1027.643	-1.1684	-0.00060151	-3.1244	-0.0016085	-4.2928	-0.00221	514.8270335492895	70.166	0.84109	70.166	69.84	70.681	0					44	19	4	0	0	0	0.027426	1	6731	6731		63.306	7.8021	1	2556700	+		24322	30725	19888	19912	27069	27069					0.13028684759092357
KLIWLSGVL	9	Unmodified	_KLIWLSGVL_					0	0	0			REV__tr|A0A553SRE9|A0A553SRE9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00870PE=4SV=1	REV__tr|A0A553SRE9|A0A553SRE9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00870PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	514.828778	1027.643	0.52905	0.00027237	-10.13	-0.0052151	-9.6007	-0.0049427	515.3254948014701	72.737	0.29875	70.234	70.067	70.365	-2.5038	0.033813	-0.0068759	NaN	60.972	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4649.2	+		24323	30725	19888	19912							0.13028684759092357
KLIWLTVL	8	Unmodified	_KLIWLTVL_					0	0	0			REV__nc|ENSG00000127507|Q9UHX3-5|ADGRE2	REV__nc|ENSG00000127507|Q9UHX3-5|ADGRE2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.28704833984375	2	493.325871	984.637189	0.2324	0.00011465	-4.4699	-0.0022051	-4.2375	-0.0020905	493.3233943648465	82.978	2.7916	80.295	79.832	82.623	-2.6829					113	57	3	0	0	0	0.028476	1	7099	7099		33.516	0	1	95823	+		24324	18818	19889	19913	27070	27070					0.14425586247398314
KLIYVPHHTL	10	Unmodified	_KLIYVPHHTL_					0	0	0			REV__nc|ENSG00000127952|Q9Y6J8-2|STYXL1	REV__nc|ENSG00000127952|Q9Y6J8-2|STYXL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	407.5796203613281	3	407.576519	1219.70773	1.0344	0.00042159	4.3854	0.0017874	5.4198	0.002209	407.5782791583038	58.499	2.3811	55.107	54.752	57.133	-3.392					132	47	5	0	0	0	0.60504	1	3896	3896		41.427	1.3684	1	1731900	+		24325	18833	19890	19914	27071	27071					0.1066625956509597
KLKAALDCCV	10	Unmodified	_KLKAALDCCV_					0	0	0		nc|ENSG00000006740|Q17R89-2|ARHGAP44;nc|ENSG00000006740|Q17R89-3|ARHGAP44;ENSG00000006740|ENST00000379672|ARHGAP44	nc|ENSG00000006740|Q17R89-2|ARHGAP44	nc|ENSG00000006740|Q17R89-2|ARHGAP44	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.2820434570312	2	532.285563	1062.55657	-4.7762	-0.0025423	2.0335	0.0010824	-2.7427	-0.0014599	532.2862801248648	153.11	0.87201	151.68	151.39	152.26	-1.435					46	20	3	0	0	0	0.69073	1	15175	15175		31.53	0	1	140760			24326	890	19891	19915	27072	27072					0.02779613870529829
KLKADKTGPLI	11	Unmodified	_KLKADKTGPLI_					0	0	0			REV__ENST00000510740.1_1_5:36668711-36725248:-|nuORF	REV__ENST00000510740.1_1_5:36668711-36725248:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	592.3715209960938	2	592.374081	1182.73361	-4.4138	-0.0026146	1.0011	0.00059302	-3.4127	-0.0020216	592.3745667748314	155.34	1.3333	153.85	153.54	154.88	-1.4911					97	38	4	0	0	0	0.71498	1	15404	15404		24.519	1.9395	1	262760	+		24327	26946	19892	19916	27073	27073					0.149551090166824
KLKAFDKDL	9	Unmodified	_KLKAFDKDL_					0	0	0			REV__tr|A0A7D6VS35|A0A7D6VS35_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03420PE=4SV=1	REV__tr|A0A7D6VS35|A0A7D6VS35_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03420PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.2938842773438	2	539.318774	1076.623	1.8622	0.0010043	-0.63114	-0.00034039	1.2311	0.00066395	539.8198104600783	77.926	0.73883	77.926	77.844	78.583	0					21	17	2	0	0	0	0.027446	1	7882	7882		42.864	5.0528	1	1015000	+		24328	31464	19893	19917	27074	27074					0.08774889028450161
KLKAKALEL	9	Unmodified	_KLKAKALEL_					0	0	0			REV__tr|A0A7D7A3E8|A0A7D7A3E8_9CLOTATP-dependentClpproteaseproteolyticsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_11805PE=3SV=1	REV__tr|A0A7D7A3E8|A0A7D7A3E8_9CLOTATP-dependentClpproteaseproteolyticsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_11805PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	507.3414001464844	2	507.33951	1012.66447	2.0103	0.0010199	-0.10903	-5.5314E-05	1.9013	0.0009646	507.3392639862571	74.897	0.61627	74.897	74.635	75.251	0					32	14	3	0	0	0	0.24951	1	7442	7442		68.787	12.066	1	1207700	+		24329	32581	19894	19918	27075	27075					0.1586406978777859
KLKAQLNL	8	Unmodified	_KLKAQLNL_					0	0	0			REV__HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|45|1|sense	REV__HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|45|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.7456970214844	2	464.302927	926.591301	-0.25777	-0.00011969	-0.71564	-0.00033227	-0.97341	-0.00045196	464.30265675864257	42.829	0.38736	42.829	42.583	42.97	0					13	8	2	0	0	0	0.028476	1	2778	2778		17.365	0	1	84066	+		24330	28274	19895	19919	27076	27076					0.12506941065157662
KLKARSHTF	9	Unmodified	_KLKARSHTF_					0	0	0			REV__nc|ENSG00000163803|Q6P1J6-5|PLB1	REV__nc|ENSG00000163803|Q6P1J6-5|PLB1	MULTI-SECPEP	OvCa9_classI_Rep2	2	544.7708740234375	2	544.322183	1086.62981	0.47469	0.00025839	2.5955	0.0014128	3.0702	0.0016712	544.3232481628394	42.651	0.29575	39.942	39.818	40.114	-2.7097					9	5	2	0	0	0	0.027462	1	2319	2319		29.15	7.1897	1	11337	+		24331	20890	19896	19920	27077	27077					0.08996246699689436
KLKATGHVF	9	Unmodified	_KLKATGHVF_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1;nc|ENSG00000095564|O14981-2|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MULTI-MSMS	OvCa9_classI_Rep2	2	500.7980651855469	2	500.800552	999.58655	-3.3891	-0.0016973	-0.88633	-0.00044387	-4.2754	-0.0021411	500.79997207948645	149.12	1.1552	148.89	148.52	149.67	-0.22696					61	22	4	0	0	0	0.59983	1	15125	15125		31.955	5.1588	1	177980			24332	1932	19897	19921	27078	27078					0.08674056922427553
KLKATGHVF	9	Unmodified	_KLKATGHVF_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1;nc|ENSG00000095564|O14981-2|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.7986145019531	2	500.800552	999.58655	-2.9685	-0.0014866	-1.2934	-0.00064775	-4.262	-0.0021344	500.7998390995193	149.78	1.7039	148.35	147.52	149.23	-1.4344					90	34	4	0	0	0	0.63422	1	14802	14802		27.882	3.6795	1	346200			24333	1932	19897	19921	27079	27079					0.08674056922427553
KLKDIFLFI	9	Unmodified	_KLKDIFLFI_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A;nc|ENSG00000121892|Q29RF7-3|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	OvCa99_classI_Rep5	1	568.858154296875	2	568.857535	1135.70052	1.0597	0.00060279	0.66106	0.00037605	1.7207	0.00097884	568.8577347609626	131.55	1.6957	131.55	131.25	132.94	0					89	35	4	0	0	0	0.37182	1	15291	15291		54.722	6.8067	1	1323300			24334	3504	19898	19922	27080	27080					0.13809526964632823
KLKDKDIIE	9	Unmodified	_KLKDKDIIE_					0	0	0		nc|ENSG00000130783|Q6P9F0-2|CCDC62;ENSG00000130783|ENST00000253079|CCDC62	nc|ENSG00000130783|Q6P9F0-2|CCDC62	nc|ENSG00000130783|Q6P9F0-2|CCDC62	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.3048095703125	2	551.329339	1100.64412	1.6956	0.00093485	0.18387	0.00010137	1.8795	0.0010362	551.329036591559	81.903	0.57027	81.903	81.694	82.264	0					37	13	3	0	0	0	0.027446	1	8450	8450		60.118	8.9256	1	885780			24335	15013	19899	19923	27081	27081					0.09782854337322533
KLKDLILLI	9	Unmodified	_KLKDLILLI_					0	0	0		ENSG00000111335|ENST00000392583|OAS2;nc|ENSG00000111335|P29728|OAS2	ENSG00000111335|ENST00000392583|OAS2	ENSG00000111335|ENST00000392583|OAS2	MULTI-MSMS	OvCa99_classI_Rep5	1	534.8746948242188	2	534.873185	1067.73182	1.4558	0.00077865	0.090798	4.8566E-05	1.5466	0.00082722	534.8730876845476	124.86	1.3861	124.86	124.56	125.95	0					71	32	4	0	0	0	0.075543	1	14426	14426		104.06	0	1	2277100			24336	2823	19900	19924	27082	27082					0.20066099998757636
KLKDRLPSI	9	Unmodified	_KLKDRLPSI_					0	0	0		ENSG00000213626|ENST00000395323|LBH	ENSG00000213626|ENST00000395323|LBH	ENSG00000213626|ENST00000395323|LBH	MULTI-MSMS	OvCa99_classI_Rep5	1	535.3424072265625	2	535.340041	1068.66553	-0.083118	-4.4496E-05	0.00038303	2.0505E-07	-0.082735	-4.4291E-05	535.3398323970929	60.643	0.87474	60.643	60.153	61.028	0					60	20	4	0	0	0	0.07097	1	5297	5297		106.68	10.868	1	1902100			24337	9137	19901	19925	27083	27083					0.13394284156697722
KLKDSEAEL	9	Unmodified	_KLKDSEAEL_					0	0	0		ENSG00000122545|ENST00000350320|SEPTIN7;nc|ENSG00000122545|Q16181-2|SEPTIN7	ENSG00000122545|ENST00000350320|SEPTIN7	ENSG00000122545|ENST00000350320|SEPTIN7	MULTI-MSMS	OvCa99_classI_Rep5	1	516.7826538085938	2	516.782222	1031.54989	-1.0063	-0.00052005	0.45286	0.00023403	-0.55346	-0.00028602	516.7825393271397	41.826	0.77966	41.826	41.55	42.329	0					48	17	4	0	0	0	0.043101	1	2629	2629		124.08	33.479	1	2288100			24338	3539	19902	19926	27084	27084					0.03537715515176387
KLKDVLLQV	9	Unmodified	_KLKDVLLQV_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;CHD2-MYH9|1|fusion;nc|ENSG00000100345|P35579-2|MYH9;ENST00000475726.5_1_22:36680347-36682008:-|nuORF;ENST00000486218.1_1_22:36680427-36682008:-|nuORF	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OvCa99_classI_Rep5	1	528.3465576171875	2	528.344792	1054.67503	2.2568	0.0011924	-0.52445	-0.00027709	1.7324	0.00091529	528.3445243532176	87.69	1.8968	87.69	87.378	89.275	0					154	45	5	0	0	0	0.018335	4	9277	9277;9304;9334;9426		148.99	13.575	1	60651000			24339	2050	19903	19927	27085;27086;27087;27088	27085					0.14988052442208755
KLKEGHPK	8	Unmodified	_KLKEGHPK_					0	0	0			REV__ENST00000445984.5_1_20:57094606-57098803:+|nuORF	REV__ENST00000445984.5_1_20:57094606-57098803:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	469.7516174316406	2	468.784902	935.55525	-0.17673	-8.2846E-05	0.0069974	3.2803E-06	-0.16973	-7.9566E-05	468.7848566047163	69.225	0.73213	65.743	65.565	66.297	-3.4812					25	14	3	0	0	0	0.028476	1	5176	5176		21.96	3.6355	1	42692	+		24340	25895	19904	19928	27089	27089					0.08489483888320137
KLKEIFDKI	9	Unmodified	_KLKEIFDKI_					0	0	0		nc|ENSG00000119392|Q53GS7-2|GLE1;ENSG00000119392|ENST00000309971|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	nc|ENSG00000119392|Q53GS7-2|GLE1	MULTI-MSMS	OvCa99_classI_Rep5	1	567.3521728515625	2	567.350074	1132.6856	0.1242	7.0464E-05	-0.20341	-0.0001154	-0.079207	-4.4938E-05	567.3497786986097	72.962	1.1465	72.962	72.645	73.792	0					78	28	4	0	0	0	0.0093048	2	7127	7127;7159		172.25	23.262	1	4742100			24341	3357	19905	19929	27090;27091	27090					0.12456035096647611
KLKEIFMQV	9	Unmodified	_KLKEIFMQV_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MULTI-MSMS	OvCa99_classI_Rep5	1	568.3324584960938	2	568.330827	1134.6471	2.4036	0.001366	-1.246	-0.00070816	1.1575	0.00065786	568.3299951079174	86.906	0.41719	86.906	86.679	87.096	0					18	9	3	0	0	0	0.14855	1	9181	9181		85.161	13.865	1	977880			24342	15021	19906	19930	27092	27092					0.08516406190483394
KLKEILLQV	9	Unmodified	_KLKEILLQV_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.6638793945312	2	542.360442	1082.70633	2.9861	0.0016196	-0.86661	-0.00047002	2.1195	0.0011495	542.3598954716307	89.674	0.75125	89.674	89.435	90.186	0					41	17	3	0	0	0	0.027418	1	9593	9593		52.937	3.4007	1	1868900			24343	4218	19907	19931	27093	27093					0.16828625476318848
KLKEKEDKL	9	Unmodified	_KLKEKEDKL_					0	0	0		ENSG00000122728|ENST00000242310|TAF1L;TAF1L|p.I1514Qfs*6|1|0.03|ENSG00000122728|chr9:32631039-32631040|AT/-|frameshift_variant;nc|ENSG00000147133|P21675-16|TAF1;nc|ENSG00000147133|P21675-17|TAF1;nc|ENSG00000147133|P21675|TAF1;ENSG00000147133|ENST00000423759|TAF1;nc|ENSG00000147133|P21675-1|TAF1;nc|ENSG00000147133|P21675-22|TAF1;nc|ENSG00000147133|P21675-18|TAF1;nc|ENSG00000147133|P21675-25|TAF1;nc|ENSG00000147133|P21675-13|TAF1;nc|ENSG00000147133|P21675-20|TAF1;nc|ENSG00000147133|P21675-19|TAF1;nc|ENSG00000147133|P21675-15|TAF1;nc|ENSG00000147133|P21675-21|TAF1;nc|ENSG00000147133|P21675-24|TAF1;nc|ENSG00000147133|P21675-23|TAF1	ENSG00000122728|ENST00000242310|TAF1L	ENSG00000122728|ENST00000242310|TAF1L	MULTI-MSMS	OvCa99_classI_Rep5	1	565.8423461914062	2	565.842613	1129.67067	-0.68039	-0.000385	0.36269	0.00020522	-0.3177	-0.00017977	565.8426971247037	27.331	0.54951	27.331	27.191	27.741	0					20	10	3	0	0	0	0.066102	1	797	797		109.48	5.4215	1	261880			24344	3551	19908	19932	27094	27094					0.11102543228662398
KLKEKTGSA	9	Unmodified	_KLKEKTGSA_					0	0	0			REV__tr|A0A7D6VQ55|A0A7D6VQ55_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14295PE=4SV=1	REV__tr|A0A7D6VQ55|A0A7D6VQ55_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14295PE=4SV=1	MSMS	OvCa9_classI_Rep2	2	481.2817077636719	2	481.287474	960.560395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	158.13	1	157.9	157.4	158.4	-0.22696								0	0	0	0.26117	1	16066	16066		16.473	2.6978	1		+		24345	31298	19909	19933	27095	27095					0.07853742960276122
KLKERKSL	8	Unmodified	_KLKERKSL_					0	0	0			REV__tr|A0A7D6W494|A0A7D6W494_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19805PE=4SV=1	REV__tr|A0A7D6W494|A0A7D6W494_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19805PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.7188415527344	2	501.326934	1000.63931	-0.46145	-0.00023134	0.56531	0.00028341	0.10387	5.2071E-05	501.3269358890181	39.129	0.22445	39.129	39.017	39.242	0					6	4	2	0	0	0	0.028476	1	2286	2286		51.335	5.3835	1	18011	+		24346	31937	19910	19934	27096	27096					0.13902014985217193
KLKERLDQP	9	Unmodified	_KLKERLDQP_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.8329467773438	2	563.83258	1125.65061	2.2134	0.001248	-2.7596	-0.001556	-0.54626	-0.000308	563.8309218791892	37.159	1.6426	34.266	33.943	35.586	-2.8925					74	32	4	0	0	0	0.2077	1	1335	1335		75.043	5.4157	1	421830			24347	4032	19911	19935	27097	27097					0.09280792288700468
KLKESLINSG	10	Unmodified	_KLKESLINSG_					0	0	0		ENSG00000196074|ENST00000357552|SYCP2;ENST00000474749.1_1_20:58460187-58461844:-|nuORF	ENSG00000196074|ENST00000357552|SYCP2	ENSG00000196074|ENST00000357552|SYCP2	MULTI-MSMS	OvCa99_classI_Rep5	1	544.8187866210938	2	544.819138	1087.62372	-0.67566	-0.00036812	0.71003	0.00038684	0.034368	1.8724E-05	544.819477063657	28.912	0.7976	28.912	28.688	29.486	0					36	15	4	0	0	0	0.19075	1	977	977		95.815	2.6197	1	1139000			24348	8559	19912	19936	27098	27098					0.08341683677508627
KLKEVGQAQLK	11	Unmodified	_KLKEVGQAQLK_					0	0	0		JARID2|p.F790Lfs*33|1|0.15|ENSG00000008083|chr6:15501331-15501331|C/-|frameshift_variant;nc|ENSG00000008083|Q92833-2|JARID2;nc|ENSG00000008083|Q92833-3|JARID2;ENSG00000008083|ENST00000341776|JARID2	JARID2|p.F790Lfs*33|1|0.15|ENSG00000008083|chr6:15501331-15501331|C/-|frameshift_variant	JARID2|p.F790Lfs*33|1|0.15|ENSG00000008083|chr6:15501331-15501331|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	414.59027099609375	3	414.590717	1240.75032	0.002839	1.177E-06	1.5818	0.00065579	1.5846	0.00065696	414.5912032100085	57.072	1.3406	54.28	53.832	55.173	-2.792					73	26	3	0	0	0	0.65267	1	4036	4036		39.873	3.4264	1	128050			24349	911	19913	19937	27099	27099					0.13957609902649892
KLKFKSGGKMA	11	Unmodified	_KLKFKSGGKMA_					0	0	0			REV__ENSG00000163798|ENST00000326019|SLC4A1AP	REV__ENSG00000163798|ENST00000326019|SLC4A1AP	MSMS	OvCa9_classI_Rep4_	4	597.8567504882812	2	597.855001	1193.69545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	150.01	1	148.58	148.08	149.08	-1.4344								0	0	0	0.19458	1	14810	14810		30.318	1.1477	1		+		24350	20889	19914	19938	27100	27100					0.10634899830415634
KLKFSVLEL	9	Unmodified	_KLKFSVLEL_					0	0	0		ENSG00000073910|ENST00000542859|FRY;ENST00000602645.1_1_13:32850618-32850744:+|nuORF	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.7733154296875	2	538.839342	1075.66413	2.2607	0.0012182	-0.26568	-0.00014316	1.995	0.001075	538.8390148463682	86.031	0.5613	86.031	85.87	86.431	0					22	13	3	0	0	0	0.027462	1	9043	9043		26.693	3.6504	1	705320			24351	1503	19915	19939	27101	27101					0.12932650067932627
KLKGESFLHK	10	Unmodified	_KLKGESFLHK_					0	0	0			REV__ENST00000392882.6_1_14:100841711-100841786:-|nuORF	REV__ENST00000392882.6_1_14:100841711-100841786:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.7830200195312	2	593.850773	1185.68699	1.6959	0.0010071	0.88213	0.00052385	2.5781	0.001531	593.8505577659987	148.55	0.19685	148.55	148.42	148.62	0					5	3	2	0	0	0	0.027145	1	17383	17383		24.519	6.2571	1	9058.2	+		24352	25269	19916	19940	27102	27102					0.10157669185400664
KLKGIKDIPI	10	Unmodified	_KLKGIKDIPI_					0	0	0		tr|A0A7D6W1N2|A0A7D6W1N2_9CLOTProlyloligopeptidasefamilyserinepeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03840PE=4SV=1	tr|A0A7D6W1N2|A0A7D6W1N2_9CLOTProlyloligopeptidasefamilyserinepeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03840PE=4SV=1	tr|A0A7D6W1N2|A0A7D6W1N2_9CLOTProlyloligopeptidasefamilyserinepeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03840PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.7939453125	2	562.873717	1123.73288	0.69742	0.00039256	-1.3349	-0.0007514	-0.63751	-0.00035884	562.8728797987774	89.023	0.83712	86.42	86.085	86.922	-2.6027					37	16	3	0	0	0	0.026826	1	7662	7662		36.447	4.9169	1	66626			24353	35412	19917	19941	27103	27103					0.17596314367642663
KLKGLAAEP	9	Unmodified	_KLKGLAAEP_					0	0	0		ENSG00000162994|ENST00000401408|CLHC1	ENSG00000162994|ENST00000401408|CLHC1	ENSG00000162994|ENST00000401408|CLHC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.77294921875	2	463.78711	925.559667	-0.063799	-2.9589E-05	1.8555	0.00086054	1.7917	0.00083095	463.78798025148745	53.004	0.21436	53.004	52.873	53.087	0					8	4	2	0	0	0	0.027441	1	4198	4198		25.574	3.6142	1	101240			24354	6253	19918	19942	27104	27104					0.09390948311215652
KLKGPDVKL	9	Unmodified	_KLKGPDVKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant;AHNAK|p.P895Cfs*7|1|0.12|ENSG00000124942|chr11:62531725-62531735|CCACTTCTGGG/-|frameshift_variant;AHNAK|p.P767Cfs*7|1|0.15|ENSG00000124942|chr11:62532109-62532119|CCACTTCTGGG/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa99_classI_Rep5	1	499.3243408203125	2	499.32386	996.633166	-0.25782	-0.00012874	-0.11203	-5.5939E-05	-0.36985	-0.00018468	499.32367885173295	52.398	1.4372	52.398	52.038	53.475	0					74	32	4	0	0	0	0.021573	3	4108	4087;4108;4134		145.16	21.076	1	6540800			24355	3687	19919	19943	27105;27106;27107	27106					0.1347149675369792
KLKGQVSLL	9	Unmodified	_KLKGQVSLL_					0	0	0		ENST00000508179.1_1_5:9549846-9550119:+|nuORF	ENST00000508179.1_1_5:9549846-9550119:+|nuORF	ENST00000508179.1_1_5:9549846-9550119:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.3233947753906	2	493.32386	984.633166	0.2425	0.00011963	-1.1229	-0.00055394	-0.88037	-0.00043431	493.3231302299978	116.17	1.6901	114.8	114.5	116.19	-1.3645					62	32	3	0	0	0	0.35444	1	10833	10833		56.721	7.2795	1	214860			24356	12941	19920	19944	27108	27108					0.14023496753691234
KLKGSGFPM	9	Unmodified	_KLKGSGFPM_					0	0	0		ENST00000296464.8_1_4:128716968-128719754:+|nuORF	ENST00000296464.8_1_4:128716968-128719754:+|nuORF	ENST00000296464.8_1_4:128716968-128719754:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.7584228515625	2	482.767863	963.521173	1.9883	0.0009599	-0.30737	-0.00014839	1.681	0.00081151	482.7680743127523	134.22	0.51704	134.22	133.91	134.43	0					18	10	2	0	0	0	0.027462	1	15606	15606		53.351	30.309	1	262570			24357	10134	19921	19945	27109	27109					0.03795319405060127
KLKGSHMDAE	10	Unmodified	_KLKGSHMDAE_					0	0	0			REV__tr|A0A553SLQ3|A0A553SLQ3_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21065PE=4SV=1	REV__tr|A0A553SLQ3|A0A553SLQ3_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21065PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	557.3307495117188	2	558.279323	1114.54409	-1.1851	-0.00066164	-1.683	-0.0009396	-2.8682	-0.0016012	558.2782451331691	81.91	1.5471	79.614	79.335	80.882	-2.2963					66	30	3	0	0	0	0.026931	1	4551	4551		23.523	0	1	150370	+		24358	30250	19922	19946	27110	27110					-0.008597062681246825
KLKHAEFLN	9	Unmodified	_KLKHAEFLN_					0	0	0			REV__nc|ENSG00000166391|Q3SYC2-2|MOGAT2	REV__nc|ENSG00000166391|Q3SYC2-2|MOGAT2	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7772827148438	2	550.316566	1098.61858	1.6459	0.00090575	0.96311	0.00053001	2.609	0.0014358	550.3169079756477	81.914	0.3261	81.914	81.694	82.02	0					13	7	2	0	0	0	0.027418	1	8456	8456		62.107	0	1	462890	+		24359	21186	19923	19947	27111	27111					0.07321424605561333
KLKISEEDL	9	Unmodified	_KLKISEEDL_					0	0	0		ENST00000508360.5_1_4:89653076-89671014:-|nuORF;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;FAM13A|p.S907Mfs*12|1|0.03|ENSG00000138640|chr4:88732125-88732126|-/A|frameshift_variant;ENSG00000138640|ENST00000264344|FAM13A	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	537.80615234375	2	537.805697	1073.59684	-0.1716	-9.2288E-05	1.7332	0.00093215	1.5616	0.00083986	537.8055351356038	47.232	0.99947	47.232	46.985	47.984	0					49	22	4	0	0	0	0.1944	1	3380	3380		77.318	4.4383	1	1561100			24360	4701	19924	19948	27112	27112					0.06298575066307421
KLKISEEDL	9	Unmodified	_KLKISEEDL_					0	0	0		ENST00000508360.5_1_4:89653076-89671014:-|nuORF;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;FAM13A|p.S907Mfs*12|1|0.03|ENSG00000138640|chr4:88732125-88732126|-/A|frameshift_variant;ENSG00000138640|ENST00000264344|FAM13A	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	537.805697	1073.59684	-2.2164	-0.001192	6.2552	0.0033641	4.0388	0.0021721	538.3090799692947	50.455	0.25915	47.314	47.184	47.444	-3.1416	0.040807	5.4065E-05	NaN	77.318	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14124			24361	4701	19924	19948							0.06298575066307421
KLKKAGNQTG	10	Unmodified	_KLKKAGNQTG_					0	0	0		ENSG00000096968|ENST00000381652|JAK2;JAK2|p.Y913Vfs*12|1|0.15|ENSG00000096968|chr9:5089834-5089835|-/A|frameshift_variant;JAK2|p.C616Vfs*14|1|0.06|ENSG00000096968|chr9:5073766-5073766|A/-|frameshift_variant	ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	MULTI-MSMS	OvCa9_classI_Rep2	2	522.8106689453125	2	522.811648	1043.60874	-3.2639	-0.0017064	2.8182	0.0014734	-0.44562	-0.00023298	522.8130718441414	152.23	1.0358	152.01	151.65	152.69	-0.22696					50	20	4	0	0	0	0.71173	1	15483	15483		29.17	2.4771	1	119960			24362	1952	19925	19949	27113	27113					0.08868236600164892
KLKKDEISV	9	Unmodified	_KLKKDEISV_					0	0	0		ENST00000465567.1_1_17:15930614-15930833:+|nuORF;ENST00000481107.1_1_17:15928260-15930833:+|nuORF;ENST00000475723.5_1_17:15903657-15930833:+|nuORF;PCNX-TTC19|1|fusion;ENSG00000011295|ENST00000261647|TTC19	ENST00000465567.1_1_17:15930614-15930833:+|nuORF	ENST00000465567.1_1_17:15930614-15930833:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.2942504882812	2	530.324057	1058.63356	-1.9541	-0.0010363	2.7335	0.0014496	0.77934	0.0004133	530.325348802504	43.741	1.625	40.734	40.326	41.951	-3.0074					72	31	3	0	0	0	0.027462	1	2252	2252		40.778	3.6191	1	290340			24363	961	19926	19950	27114	27114					0.10658871682880999
KLKKDEISV	9	Unmodified	_KLKKDEISV_					0	0	0		ENST00000465567.1_1_17:15930614-15930833:+|nuORF;ENST00000481107.1_1_17:15928260-15930833:+|nuORF;ENST00000475723.5_1_17:15903657-15930833:+|nuORF;PCNX-TTC19|1|fusion;ENSG00000011295|ENST00000261647|TTC19	ENST00000465567.1_1_17:15930614-15930833:+|nuORF	ENST00000465567.1_1_17:15930614-15930833:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.324057	1058.63356	-0.22924	-0.00012157	0.79967	0.00042408	0.57043	0.00030251	530.3242615736883	43.591	1.3919	40.882	40.459	41.851	-2.7097	0.073847	-0.001355	NaN	110.12	64	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121990			24364	961	19926	19950							0.10658871682880999
KLKKKILGK	9	Unmodified	_KLKKKILGK_					0	0	0			REV__ENSG00000165490|ENST00000533655|DDIAS	REV__ENSG00000165490|ENST00000533655|DDIAS	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.35791015625	2	528.386794	1054.75904	-0.93349	-0.00049325	1.3971	0.00073821	0.4636	0.00024496	528.3875945593488	50.224	0.17215	50.224	50.073	50.245	0					6	3	2	0	0	0	0.027462	1	3784	3784		12.207	0.69583	1	57449	+		24365	21092	19927	19951	27115	27115					0.23384628329790758
KLKKKVAIFIF	11	Unmodified	_KLKKKVAIFIF_					0	0	0			REV__ENST00000527958.5_1_11:117041336-117041564:+|nuORF	REV__ENST00000527958.5_1_11:117041336-117041564:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	445.7437438964844	3	445.635598	1333.88496	0.70886	0.0003159	-0.038337	-1.7084E-05	0.67053	0.00029881	445.63553718351204	60.977	0.77214	60.977	60.602	61.374	0					28	17	2	0	0	0	0.02642	1	5354	5354		6.3209	0.90796	1	368790	+		24366	27161	19928	19952	27116	27116					0.23137715115194624
KLKKPADIPN	10	Unmodified	_KLKKPADIPN_					0	0	0		nc|ENSG00000049759|Q96PU5-9|NEDD4L;nc|ENSG00000049759|Q96PU5-4|NEDD4L;nc|ENSG00000049759|Q96PU5-3|NEDD4L;nc|ENSG00000049759|Q96PU5-2|NEDD4L;nc|ENSG00000049759|Q96PU5-6|NEDD4L;nc|ENSG00000049759|Q96PU5-5|NEDD4L;nc|ENSG00000049759|Q96PU5-7|NEDD4L;ENSG00000049759|ENST00000400345|NEDD4L	nc|ENSG00000049759|Q96PU5-9|NEDD4L	nc|ENSG00000049759|Q96PU5-9|NEDD4L	MULTI-MSMS	OvCa9_classI_Rep3	3	562.3431396484375	2	562.345323	1122.67609	-2.9015	-0.0016316	-0.70711	-0.00039764	-3.6086	-0.0020293	562.3448419475409	142.33	4.504	141.32	140	144.5	-1.0106					205	90	3	0	0	0	0.79917	1	11931	11931		19.104	0.84144	1	106680			24367	1173	19929	19953	27117	27117					0.11966266811123205
KLKKPTLEY	9	Unmodified	_KLKKPTLEY_					0	0	0		tr|A0A553SQM6|A0A553SQM6_NIACIConjugaltransferproteinOS=NialliacirculansOX=1397GN=CEQ21_07925PE=4SV=1	tr|A0A553SQM6|A0A553SQM6_NIACIConjugaltransferproteinOS=NialliacirculansOX=1397GN=CEQ21_07925PE=4SV=1	tr|A0A553SQM6|A0A553SQM6_NIACIConjugaltransferproteinOS=NialliacirculansOX=1397GN=CEQ21_07925PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.3399047851562	2	560.342249	1118.66995	-5.405	-0.0030286	1.8017	0.0010096	-3.6033	-0.0020191	560.3432112723539	161.88	2.7705	160.26	159.52	162.29	-1.6239					146	74	5	0	0	0	0.59983	1	16013	16013		31.955	4.0726	1	403070			24368	34181	19930	19954	27118	27118					0.11535748579603933
KLKKSKFEVL	10	Unmodified	_KLKKSKFEVL_					0	0	0		ENSG00000173610|ENST00000286604|UGT2A1;nc|ENSG00000173610|P0DTE4-1|UGT2A1;nc|ENSG00000173610|P0DTE4-4|UGT2A1	ENSG00000173610|ENST00000286604|UGT2A1	ENSG00000173610|ENST00000286604|UGT2A1	MULTI-MSMS	OvCa9_classI_Rep3	3	407.2632751464844	3	407.263941	1218.76999	1.8047	0.00073498	-3.7978	-0.0015467	-1.9931	-0.00081172	407.26226398347274	67.562	1.5001	64.675	64.341	65.841	-2.8873					59	29	3	0	0	0	0.72142	1	2888	2888		28.081	2.9555	1	125720			24369	7395	19931	19955	27119	27119					0.16935985913414697
KLKKTEDKL	9	Unmodified	_KLKKTEDKL_					0	0	0		ENSG00000168386|ENST00000477258|FILIP1L;nc|ENSG00000168386|Q4L180-6|FILIP1L;nc|ENSG00000168386|Q4L180-5|FILIP1L;nc|ENSG00000168386|Q4L180-3|FILIP1L;nc|ENSG00000168386|Q4L180-7|FILIP1L;nc|ENSG00000168386|Q4L180-2|FILIP1L;nc|ENSG00000168386|Q4L180|FILIP1L	ENSG00000168386|ENST00000477258|FILIP1L	ENSG00000168386|ENST00000477258|FILIP1L	MULTI-MSMS	OvCa99_classI_Rep5	1	551.8450317382812	2	551.845156	1101.67576	-1.0269	-0.0005667	0.86107	0.00047518	-0.16584	-9.1518E-05	551.8455808472431	26.967	0.49931	26.967	26.792	27.291	0					21	9	3	0	0	0	0.10502	1	749	749		95.815	2.6719	1	348460			24370	6898	19932	19956	27120	27120					0.1289884709128728
KLKKTETQEK	10	Unmodified	_KLKKTETQEK_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10;CON__P21752;ENSG00000154620|ENST00000284856|TMSB4Y;ENSG00000205542|ENST00000451311|TMSB4X	ENSG00000034510|ENST00000233143|TMSB10;ENSG00000154620|ENST00000284856|TMSB4Y	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	OvCa9_classI_Rep2	2	616.8641357421875	2	616.864077	1231.7136	3.1131	0.0019204	-3.4343	-0.0021185	-0.32118	-0.00019812	616.8619391818793	25.113	1.05	22.404	22.261	23.311	-2.7097					60	23	4	0	0	0	0.05764	7	213	207;213;220;231;238;250;264		126.24	29.953	1	418920		+	24371	1078;5746	19933	19957	27121;27122;27123;27124;27125;27126;27127	27122					0.10701313286085679
KLKLAVADLEK	11	Unmodified	_KLKLAVADLEK_					0	0	0		ENSG00000117724|ENST00000366955|CENPF;CENPF|p.E1182Vfs*21|1|0.46|ENSG00000117724|chr1:214641879-214641882|AGAG/-|frameshift_variant	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-MSMS	OvCa9_classI_Rep4_	4	614.384521484375	2	614.387188	1226.75982	-5.2638	-0.003234	1.9349	0.0011888	-3.3289	-0.0020452	614.3881829227306	157.6	1.278	156.06	155.71	156.98	-1.545					89	35	4	0	0	0	0.70142	1	15602	15602		29.17	4.6509	1	332270			24372	3276	19934	19958	27128	27128					0.15551378188160925
KLKLEVVNT	9	Unmodified	_KLKLEVVNT_					0	0	0		tr|A0A7D6ZUS4|A0A7D6ZUS4_9CLOTNucleartransportfactor2familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12990PE=4SV=1	tr|A0A7D6ZUS4|A0A7D6ZUS4_9CLOTNucleartransportfactor2familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12990PE=4SV=1	tr|A0A7D6ZUS4|A0A7D6ZUS4_9CLOTNucleartransportfactor2familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12990PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.7850341796875	2	522.326599	1042.63865	-0.34822	-0.00018189	-0.085551	-4.4686E-05	-0.43377	-0.00022657	522.3261423039638	75.202	0.96719	71.971	71.726	72.693	-3.2308					51	19	4	0	0	0	0.027462	1	5974	5974		30.318	4.7437	1	271150			24373	35783	19935	19959	27129	27129					0.11903175545512568
KLKLGASL	8	Unmodified	_KLKLGASL_					0	0	0			REV__tr|A0A553SP89|A0A553SP89_NIACIUDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)pyrophosphoryl-undecaprenolN-acetylglucosaminetransferaseOS=NialliacirculansOX=1397GN=murGPE=3SV=1	REV__tr|A0A553SP89|A0A553SP89_NIACIUDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)pyrophosphoryl-undecaprenolN-acetylglucosaminetransferaseOS=NialliacirculansOX=1397GN=murGPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.5586853027344	2	415.278921	828.543289	0.63796	0.00026493	-1.2681	-0.00052661	-0.63012	-0.00026167	415.2782536546237	47.018	0.31235	47.018	46.809	47.121	0					9	6	2	0	0	0	0.028476	1	3352	3352		40.573	7.057	1	36134	+		24374	30512	19936	19960	27130	27130					0.12215867145118864
KLKLGASL	8	Unmodified	_KLKLGASL_					0	0	0			REV__tr|A0A553SP89|A0A553SP89_NIACIUDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)pyrophosphoryl-undecaprenolN-acetylglucosaminetransferaseOS=NialliacirculansOX=1397GN=murGPE=3SV=1	REV__tr|A0A553SP89|A0A553SP89_NIACIUDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)pyrophosphoryl-undecaprenolN-acetylglucosaminetransferaseOS=NialliacirculansOX=1397GN=murGPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	415.278921	828.543289	-0.34021	-0.00014128	-0.27675	-0.00011493	-0.61696	-0.00025621	415.2786429711281	49.698	0.59503	46.938	46.671	47.266	-2.7603	0.038721	-0.0012684	NaN	40.573	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12349	+		24375	30512	19936	19960							0.12215867145118864
KLKLGASL	8	Unmodified	_KLKLGASL_					0	0	0			REV__tr|A0A553SP89|A0A553SP89_NIACIUDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)pyrophosphoryl-undecaprenolN-acetylglucosaminetransferaseOS=NialliacirculansOX=1397GN=murGPE=3SV=1	REV__tr|A0A553SP89|A0A553SP89_NIACIUDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)pyrophosphoryl-undecaprenolN-acetylglucosaminetransferaseOS=NialliacirculansOX=1397GN=murGPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	415.278921	828.543289	-1.7682	-0.00073431	2.1018	0.00087285	0.33361	0.00013854	415.2796762491922	49.883	0.62617	46.741	46.558	47.184	-3.1416	-0.15763	0.00070714	NaN	40.573	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28317	+		24376	30512	19936	19960							0.12215867145118864
KLKLIFMSKI	10	Unmodified	_KLKLIFMSKI_					0	0	0			REV__ENST00000585184.1_1_18:20837141-20837297:-|nuORF	REV__ENST00000585184.1_1_18:20837141-20837297:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	407.5797119140625	3	407.598155	1219.77264	0.60535	0.00024674	0.93713	0.00038197	1.5425	0.00062871	407.5989293997217	57.728	0.39871	54.936	54.724	55.122	-2.792					11	7	2	0	0	0	0.026646	1	4155	4155		45.022	11.101	1	14380	+		24377	27853	19937	19961	27131	27131					0.17154118046732947
KLKLKAQFL	9	Unmodified	_KLKLKAQFL_					0	0	0		ENSG00000244617|ENST00000320256|ASPRV1;nc|ENSG00000244617|Q53RT3|ASPRV1	ENSG00000244617|ENST00000320256|ASPRV1	ENSG00000244617|ENST00000320256|ASPRV1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.3163452148438	2	544.863152	1087.71175	0.15544	8.4692E-05	-0.26193	-0.00014271	-0.10649	-5.8022E-05	544.8628457057445	141.22	1.1476	139.75	139.4	140.55	-1.4627					47	21	3	0	0	0	0.027462	1	13873	13873		16.473	0	1	95949			24378	9399	19938	19962	27132	27132					0.17140349058786342
KLKLKPRTL	9	Unmodified	_KLKLKPRTL_					0	0	0		tr|A0A553SGK1|A0A553SGK1_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_11005PE=3SV=1	tr|A0A553SGK1|A0A553SGK1_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_11005PE=3SV=1	tr|A0A553SGK1|A0A553SGK1_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_11005PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.8649291992188	2	548.881876	1095.7492	-0.61105	-0.0003354	-1.4617	-0.00080228	-2.0727	-0.0011377	548.8801926209576	55.333	0.40927	55.333	55.15	55.559	0					11	9	2	0	0	0	0.027462	1	4534	4534		35.618	3.6634	1	272100			24379	33167	19939	19963	27133	27133					0.20515440324402334
KLKLLYSHRK	10	Unmodified	_KLKLLYSHRK_					0	0	0			REV__ENSG00000080293|ENST00000019103|SCTR	REV__ENSG00000080293|ENST00000019103|SCTR	MULTI-SECPEP	OvCa99_classI_Rep5	1	429.8862609863281	3	429.274952	1284.80303	-0.43779	-0.00018793	0.58543	0.00025131	0.14763	6.3375E-05	429.275019890209	35.148	0.47196	35.148	34.957	35.429	0					18	9	4	0	0	0	0.027165	1	1747	1747		20.03	0	1	42249	+		24380	17053	19940	19964	27134	27134					0.1720161275609371
KLKLQKAQL	9	Unmodified	_KLKLQKAQL_					0	0	0			REV__ENSG00000196588|ENST00000355630|MRTFA	REV__ENSG00000196588|ENST00000355630|MRTFA	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.7744750976562	2	535.358234	1068.70191	-0.11862	-6.3506E-05	-0.15284	-8.1827E-05	-0.27147	-0.00014533	535.3578324453155	63.611	0.52039	63.611	63.414	63.935	0					20	12	2	0	0	0	0.027462	1	5770	5770		44.117	0	1	248780	+		24381	22847	19941	19965	27135	27135					0.17031161053387223
KLKLWKHS	8	Unmodified	_KLKLWKHS_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5;MXRA5|p.T1002Sfs*13|1|0.03|ENSG00000101825|chrX:3322682-3322683|-/AAGCCTACAGGAG|frameshift_variant	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.2975463867188	2	520.324194	1038.63383	1.5193	0.00079054	-3.2107	-0.0016706	-1.6913	-0.00088005	520.3224591125862	137.16	1.724	137.16	136.82	138.55	0					66	36	2	0	0	0	0.028476	1	16061	16061		30.504	0	1	104550			24382	2201	19942	19966	27136	27136					0.11606336193403877
KLKLYALYK	9	Unmodified	_KLKLYALYK_					0	0	0		nc|ENSG00000198721|O75521-2|ECI2;ENSG00000198721|ENST00000380118|ECI2;ENST00000464057.5_1_6:4126367-4135774:-|nuORF;ENST00000464583.5_1_6:4126367-4133998:-|nuORF	nc|ENSG00000198721|O75521-2|ECI2	nc|ENSG00000198721|O75521-2|ECI2	MULTI-MSMS	OvCa9_classI_Rep3	3	570.364013671875	2	570.362985	1138.71142	0.6132	0.00034975	-0.74106	-0.00042267	-0.12786	-7.2926E-05	570.3624601174047	66.945	1.9604	64.058	63.78	65.74	-2.8873					102	38	5	0	0	0	0.40667	2	2809	2789;2809		51.335	5.3835	1	407820			24383	8856	19943	19967	27137;27138	27138					0.1476092933894506
KLKLYKEFGD	10	Unmodified	_KLKLYKEFGD_					0	0	0			REV__tr|A0A7D6VX66|A0A7D6VX66_9CLOTPucRfamilytranscriptionalregulatorligand-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07160PE=3SV=1	REV__tr|A0A7D6VX66|A0A7D6VX66_9CLOTPucRfamilytranscriptionalregulatorligand-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07160PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	621.8392944335938	2	620.850438	1239.68632	1.2182	0.00075631	-2.2733	-0.0014114	-1.0552	-0.00065509	621.3507024039291	147.84	1.0706	147.84	147.55	148.62	0					29	21	2	0	0	0	0.027062	1	17275	17275		20.947	0	1	53947	+		24384	31765	19944	19968	27139	27139					0.07606829745691357
KLKMLLILNR	10	Unmodified	_KLKMLLILNR_					0	0	0			REV__ENST00000431693.1_1_3:10070396-10074599:+|nuORF	REV__ENST00000431693.1_1_3:10070396-10074599:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	413.9264831542969	3	414.609054	1240.80533	1.8533	0.00076842	3.606	0.0014951	5.4593	0.0022635	414.6103308409754	66.317	0.71077	63.371	63.163	63.874	-2.9459					26	13	3	0	0	0	0.026975	1	2755	2755		25.126	6.5949	1	16459	+		24385	25724	19945	19969	27140	27140					0.19456325169585398
KLKMLLILNR	10	Unmodified	_KLKMLLILNR_					0	0	0			REV__ENST00000431693.1_1_3:10070396-10074599:+|nuORF	REV__ENST00000431693.1_1_3:10070396-10074599:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	414.609054	1240.80533	-0.012805	-5.3092E-06	5.3593	0.002222	5.3465	0.0022167	414.61120092688566	66.689	0.78714	63.199	62.902	63.689	-3.4902	-0.086013	0.00085434	NaN	25.126	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15671	+		24386	25724	19945	19969							0.19456325169585398
KLKMQLNSE	9	Unmodified	_KLKMQLNSE_					0	0	0		nc|ENSG00000137841|Q00722-3|PLCB2;nc|ENSG00000137841|Q00722-2|PLCB2;ENSG00000137841|ENST00000260402|PLCB2;PLCB2|p.R766Pfs*8|1|0.09|ENSG00000137841|chr15:40292955-40292955|C/-|frameshift_variant;ENST00000558588.5_1_15:40583969-40599873:-|nuORF;PLCB2|p.R1022Nfs*56|1|0.09|ENSG00000137841|chr15:40290811-40290812|-/ATTT|frameshift_variant;PLCB2|p.A1021Efs*60|1|0.07|ENSG00000137841|chr15:40290812-40290813|-/TAGAGGCCCCTTT|frameshift_variant;PLCB2|p.R697Tfs*25|1|0.05|ENSG00000137841|chr15:40293698-40293699|-/C|frameshift_variant	nc|ENSG00000137841|Q00722-3|PLCB2	nc|ENSG00000137841|Q00722-3|PLCB2	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.8179931640625	2	545.799891	1089.58523	2.5392	0.0013859	-4.3043	-0.0023493	-1.7651	-0.00096338	545.7997627941254	86.555	0.45428	86.555	86.389	86.844	0					15	10	2	0	0	0	0.027453	1	9148	9148		54.776	1.4249	1	133220			24387	4629	19946	19970	27141	27141					0.0440205477134441
KLKNLAEVQ	9	Unmodified	_KLKNLAEVQ_					0	0	0			REV__ENST00000481749.5_1_3:138374233-138426144:-|nuORF	REV__ENST00000481749.5_1_3:138374233-138426144:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	521.8182983398438	2	521.816399	1041.61824	0.79827	0.00041655	-3.2909	-0.0017172	-2.4926	-0.0013007	521.8145751675044	30.789	0.8863	28.08	27.903	28.789	-2.7097					32	17	3	0	0	0	0.46356	1	869	869		45.972	0	1	123530	+		24388	16688	19947	19971	27142	27142					0.0991000488568261
KLKNVLDRP	9	Unmodified	_KLKNVLDRP_					0	0	0			REV__EIF2B4|p.S249P|1|0.08|ENSG00000115211|chr2:27367783-27367783|A/G|missense_variant	REV__EIF2B4|p.S249P|1|0.08|ENSG00000115211|chr2:27367783-27367783|A/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.3070678710938	2	541.837665	1081.66078	1.3205	0.00071549	4.2309	0.0022925	5.5514	0.003008	541.8397870945386	111.44	0.95207	111.44	111.11	112.06	0					30	20	2	0	0	0	0.027453	1	12659	12659		37.812	17.815	1	100840	+		24389	16347	19948	19972	27143	27143					0.1232140001393418
KLKNYRAE	8	Unmodified	_KLKNYRAE_					0	0	0			REV__nc|ENSG00000130787|O75146-2|HIP1R	REV__nc|ENSG00000130787|O75146-2|HIP1R	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.7809753417969	2	511.293091	1020.57163	-0.2239	-0.00011448	-0.80154	-0.00040982	-1.0254	-0.0005243	511.29284060628197	58.794	0.5476	58.794	58.572	59.12	0					21	13	2	0	0	0	0.028476	1	4990	4990		18.324	0.95945	1	2293900	+		24390	18971	19949	19973	27144	27144					0.06216565054410239
KLKPLEVEL	9	Unmodified	_KLKPLEVEL_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;ENST00000556969.5_1_14:75601590-75614465:-|nuORF;ENST00000555873.1_1_14:75601590-75605782:-|nuORF;ENST00000555036.1_1_14:75602424-75614456:-|nuORF	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	OvCa99_classI_Rep5	1	534.8379516601562	2	534.8368	1067.65905	2.3762	0.0012709	-0.42683	-0.00022829	1.9493	0.0010426	534.8364485507233	84.733	0.94914	84.733	84.431	85.38	0					49	22	3	0	0	0	0.055627	1	8856	8856		115.49	35.781	1	3724000			24391	7096	19950	19974	27145	27145					0.12792346205310423
KLKQFEERL	9	Unmodified	_KLKQFEERL_					0	0	0		ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	MULTI-MSMS	OvCa99_classI_Rep5	1	595.8491821289062	2	595.84823	1189.68191	-0.27142	-0.00016172	0.18121	0.00010797	-0.090207	-5.375E-05	595.8481666511985	52.191	1.044	52.191	51.871	52.915	0					63	23	4	0	0	0	0.22035	1	4088	4088		72.879	7.4139	1	1150200			24392	2604	19951	19975	27146	27146					0.09465365322807884
KLKQMLWL	8	Unmodified	_KLKQMLWL_					0	0	0			REV__nc|ENSG00000147724|Q49AJ0-2|FAM135B	REV__nc|ENSG00000147724|Q49AJ0-2|FAM135B	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.305908203125	2	530.322805	1058.63106	-0.45724	-0.00024249	1.823	0.00096676	1.3657	0.00072427	530.3235417857613	38.731	0.3531	38.731	38.619	38.972	0					18	7	4	0	0	0	0.028476	1	2226	2226		50.025	0	1	375090	+		24393	20082	19952	19976	27147	27147					0.10408744744245269
KLKRAGNSL	9	Unmodified	_KLKRAGNSL_					0	0	0		LAMB2|p.A1715Sfs*4|1|0.69|ENSG00000172037|chr3:49121550-49121551|-/T|frameshift_variant;ENSG00000172037|ENST00000305544|LAMB2;ENST00000467506.5_1_3:49158779-49159385:-|nuORF	LAMB2|p.A1715Sfs*4|1|0.69|ENSG00000172037|chr3:49121550-49121551|-/T|frameshift_variant	LAMB2|p.A1715Sfs*4|1|0.69|ENSG00000172037|chr3:49121550-49121551|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.80987548828125	2	493.808908	985.603263	0.11226	5.5436E-05	-0.27733	-0.00013695	-0.16507	-8.1512E-05	493.80859966102537	22.845	0.9819	21.451	20.923	21.905	-1.3935					59	28	3	0	0	0	0.28934	2	307	307;361		64.207	8.7031	1	52229			24394	7262	19953	19977	27148;27149	27148					0.10988557808377664
KLKRGNQKI	9	Unmodified	_KLKRGNQKI_					0	0	0		HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|112|1|anti-sense	HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|112|1|anti-sense	HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|112|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.8517456054688	2	542.851107	1083.68766	0.19137	0.00010389	-0.10052	-5.4567E-05	0.09085	4.9318E-05	542.8508997812937	34.107	1.1485	31.319	31.051	32.2	-2.7881					51	22	3	0	0	0	0.70177	1	986	986		17.365	0	1	181430			24395	14491	19954	19978	27150	27150					0.149165086251287
KLKRILKSH	9	Unmodified	_KLKRILKSH_					0	0	0		ENST00000482371.5_1_7:107224374-107269308:+|nuORF;ENST00000494086.5_1_7:107234525-107258805:+|nuORF;ENSG00000075790|ENST00000005259|BCAP29;nc|ENSG00000075790|Q9UHQ4-2|BCAP29	ENST00000482371.5_1_7:107224374-107269308:+|nuORF	ENST00000482371.5_1_7:107224374-107269308:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	561.87744140625	2	561.877125	1121.7397	0.97315	0.00054679	-0.95783	-0.00053818	0.015327	8.6121E-06	561.8764524181454	64.71	1.2124	61.716	61.395	62.607	-2.9933					52	23	3	0	0	0	0.62352	1	2534	2534		29.15	7.1897	1	78350			24396	1543	19955	19979	27151	27151					0.18369672038897988
KLKRKNADMI	10	Unmodified	_KLKRKNADMI_					0	0	0		tr|A0A553SP79|A0A553SP79_NIACICoenzymeAbiosynthesisbifunctionalproteinCoaBCOS=NialliacirculansOX=1397GN=coaBCPE=3SV=1	tr|A0A553SP79|A0A553SP79_NIACICoenzymeAbiosynthesisbifunctionalproteinCoaBCOS=NialliacirculansOX=1397GN=coaBCPE=3SV=1	tr|A0A553SP79|A0A553SP79_NIACICoenzymeAbiosynthesisbifunctionalproteinCoaBCOS=NialliacirculansOX=1397GN=coaBCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	406.24493408203125	3	406.244664	1215.71216	1.2537	0.00050932	-4.1562	-0.0016884	-2.9025	-0.0011791	406.24291439811464	83.265	1.3524	80.602	80.242	81.594	-2.6629					72	27	4	0	0	0	0.67987	1	6923	6923		32.751	1.2207	1	443100			24397	34012	19956	19980	27152	27152					0.11293400716317592
KLKRLLPTK	9	Unmodified	_KLKRLLPTK_					0	0	0			REV__tr|A0A7D6ZFP8|A0A7D6ZFP8_9CLOTVanWfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15890PE=4SV=1	REV__tr|A0A7D6ZFP8|A0A7D6ZFP8_9CLOTVanWfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15890PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.8649291992188	2	548.881876	1095.7492	-0.62083	-0.00034076	2.7951	0.0015342	2.1742	0.0011934	548.8832599817047	55.252	0.55367	55.252	54.805	55.358	0					15	12	2	0	0	0	0.027462	1	4454	4454		19.104	7.5925	1	197310	+		24398	31978	19957	19981	27153	27153					0.20515440324379597
KLKRNVQT	8	Unmodified	_KLKRNVQT_					0	0	0			REV__tr|A0A7D7A5B2|A0A7D7A5B2_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06525PE=4SV=1	REV__tr|A0A7D7A5B2|A0A7D7A5B2_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06525PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.80914306640625	2	493.808908	985.603263	0.11226	5.5436E-05	-0.27733	-0.00013695	-0.16507	-8.1512E-05	493.80859966102537	22.845	0.9819	21.451	20.923	21.905	-1.3935					59	28	3	0	0	0	0.7202	1	331	331		39.253	3.6345	1	52229	+		24399	32634	19958	19982	27154	27154					0.10988557808377664
KLKSARKF	8	Unmodified	_KLKSARKF_					0	0	0		nc|ENSG00000150275|Q96QU1|PCDH15;nc|ENSG00000150275|Q96QU1-2|PCDH15;ENST00000463095.2_1_10:55581620-55664971:-|nuORF	nc|ENSG00000150275|Q96QU1|PCDH15	nc|ENSG00000150275|Q96QU1|PCDH15	MULTI-MSMS	OvCa9_classI_Rep2	2	489.31329345703125	2	489.316369	976.618185	-2.9034	-0.0014207	-1.3918	-0.00068104	-4.2952	-0.0021017	489.3155696010777	150.8	1.5265	150.57	150.17	151.7	-0.22696					77	30	4	0	0	0	0.74971	1	15283	15283		26.796	6.3143	1	380370			24400	15090	19959	19983	27155	27155					0.12894049676367558
KLKSIHIKL	9	Unmodified	_KLKSIHIKL_					0	0	0		tr|A0A7D6VMF8|A0A7D6VMF8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13620PE=4SV=1	tr|A0A7D6VMF8|A0A7D6VMF8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13620PE=4SV=1	tr|A0A7D6VMF8|A0A7D6VMF8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13620PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.83056640625	2	540.368601	1078.72265	2.4395	0.0013182	-0.5042	-0.00027245	1.9353	0.0010458	540.3681907476281	87.777	0.54076	87.777	87.546	88.087	0					19	12	2	0	0	0	0.027459	1	9311	9311		62.107	8.756	1	299750			24401	34655	19960	19984	27156	27156					0.18643751433069156
KLKSIIKDITD	11	Unmodified	_KLKSIIKDITD_					0	0	0		tr|A0A553SNP3|A0A553SNP3_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_24955PE=4SV=1	tr|A0A553SNP3|A0A553SNP3_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_24955PE=4SV=1	tr|A0A553SNP3|A0A553SNP3_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_24955PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	425.2627868652344	3	425.262377	1272.7653	1.4407	0.0006127	-0.46259	-0.00019672	0.97816	0.00041597	425.2621237617474	67.802	1.1518	64.915	64.689	65.841	-2.8873					66	22	4	0	0	0	0.67685	1	2906	2906		37.6	1.1531	1	238150			24402	33943	19961	19985	27157	27157					0.1398305697998694
KLKSIIKDITD	11	Unmodified	_KLKSIIKDITD_					0	0	0		tr|A0A553SNP3|A0A553SNP3_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_24955PE=4SV=1	tr|A0A553SNP3|A0A553SNP3_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_24955PE=4SV=1	tr|A0A553SNP3|A0A553SNP3_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_24955PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	425.262377	1272.7653	-0.67944	-0.00028894	1.8646	0.00079294	1.1852	0.000504	425.26306036263526	67.33	0.84039	64.669	64.446	65.286	-2.661	-0.18788	0.0021999	NaN	37.6	41	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114900			24403	33943	19961	19985							0.1398305697998694
KLKSIIKDITD	11	Unmodified	_KLKSIIKDITD_					0	0	0		tr|A0A553SNP3|A0A553SNP3_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_24955PE=4SV=1	tr|A0A553SNP3|A0A553SNP3_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_24955PE=4SV=1	tr|A0A553SNP3|A0A553SNP3_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_24955PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	425.262377	1272.7653	0.55791	0.00023726	0.20292	8.6293E-05	0.76083	0.00032355	425.26238588816267	68.476	1.082	64.986	64.671	65.753	-3.4902	0.12978	7.9934E-05	NaN	37.6	49	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95743			24404	33943	19961	19985							0.1398305697998694
KLKSIIQYTG	10	Unmodified	_KLKSIIQYTG_					0	0	0		tr|A0A553SGL4|A0A553SGL4_NIACIAspartyl/glutamyl-tRNA(Asn/Gln)amidotransferasesubunitBOS=NialliacirculansOX=1397GN=gatBPE=3SV=1	tr|A0A553SGL4|A0A553SGL4_NIACIAspartyl/glutamyl-tRNA(Asn/Gln)amidotransferasesubunitBOS=NialliacirculansOX=1397GN=gatBPE=3SV=1	tr|A0A553SGL4|A0A553SGL4_NIACIAspartyl/glutamyl-tRNA(Asn/Gln)amidotransferasesubunitBOS=NialliacirculansOX=1397GN=gatBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8433227539062	2	575.845156	1149.67576	-2.8608	-0.0016474	-0.58729	-0.00033819	-3.4481	-0.0019856	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.762	1	14607	14607		23.523	0.94304	1	356230			24405	33171	19962	19986	27158	27158					0.10690847091291289
KLKSIIQYTG	10	Unmodified	_KLKSIIQYTG_					0	0	0		tr|A0A553SGL4|A0A553SGL4_NIACIAspartyl/glutamyl-tRNA(Asn/Gln)amidotransferasesubunitBOS=NialliacirculansOX=1397GN=gatBPE=3SV=1	tr|A0A553SGL4|A0A553SGL4_NIACIAspartyl/glutamyl-tRNA(Asn/Gln)amidotransferasesubunitBOS=NialliacirculansOX=1397GN=gatBPE=3SV=1	tr|A0A553SGL4|A0A553SGL4_NIACIAspartyl/glutamyl-tRNA(Asn/Gln)amidotransferasesubunitBOS=NialliacirculansOX=1397GN=gatBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	575.842529296875	2	575.845156	1149.67576	-4.018	-0.0023138	0.54994	0.00031668	-3.4681	-0.0019971	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.77039	1	12096	12096		22.58	2.5829	1	445630			24406	33171	19962	19986	27159	27159					0.10690847091291289
KLKSKRVP	8	Unmodified	_KLKSKRVP_					0	0	0		ENSG00000164326|ENST00000296777|CARTPT	ENSG00000164326|ENST00000296777|CARTPT	ENSG00000164326|ENST00000296777|CARTPT	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.3057556152344	2	478.324194	954.633835	-0.65147	-0.00031162	-3.9291	-0.0018794	-4.5805	-0.002191	478.32207844226883	41.097	0.41724	38.143	37.945	38.362	-2.9541					10	7	2	0	0	0	0.028476	1	1796	1796		25.45	0	1	8693.7			24407	6446	19963	19987	27160	27160					0.15470336193413914
KLKSSNVMR	9	Unmodified	_KLKSSNVMR_					0	0	0		nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ITPR1|p.D1039Efs*3|1|0.06|ENSG00000150995|chr3:4681372-4681373|-/A|frameshift_variant	nc|ENSG00000150995|Q14643-7|ITPR1	nc|ENSG00000150995|Q14643-7|ITPR1	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8060302734375	2	531.808051	1061.60155	-0.13133	-6.9841E-05	-3.068	-0.0016316	-3.1994	-0.0017014	531.8062968450569	34.713	1.4032	31.924	31.648	33.051	-2.7881					74	27	5	0	0	0	0.40818	1	1040	1040		51.193	3.2332	1	530470			24408	5526	19964	19988	27161	27161					0.07321180728104082
KLKSTKDEL	9	Unmodified	_KLKSTKDEL_					0	0	0		nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;ENST00000534917.1_1_12:27807636-27809701:+|nuORF	nc|ENSG00000110841|Q86W92-4|PPFIBP1	nc|ENSG00000110841|Q86W92-4|PPFIBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	531.3136596679688	2	531.313689	1060.61282	-0.1329	-7.061E-05	-0.29908	-0.00015891	-0.43198	-0.00022952	531.3134770531602	30.261	0.69492	30.261	30.036	30.731	0					40	13	5	0	0	0	0.030867	1	1145	1145		134.77	36.184	1	1504700			24409	2795	19965	19989	27162	27162					0.0849428130322849
KLKSTKSLMA	10	Unmodified	_KLKSTKSLMA_					0	0	0		nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-3|PPFIBP1	nc|ENSG00000110841|Q86W92|PPFIBP1	nc|ENSG00000110841|Q86W92|PPFIBP1	MULTI-MSMS	OvCa9_classI_Rep3	3	553.829833984375	2	553.833734	1105.65292	-3.0788	-0.0017052	-3.6684	-0.0020317	-6.7472	-0.0037369	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.73378	1	11796	11796		26.693	2.4902	1	308210			24410	14956	19966	19990	27163	27163					0.10431504702137318
KLKSTLEDQ	9	Unmodified	_KLKSTLEDQ_					0	0	0			REV__tr|A0A553SMC5|A0A553SMC5_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22300PE=4SV=1	REV__tr|A0A553SMC5|A0A553SMC5_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22300PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.275634765625	2	531.295496	1060.57644	-0.18569	-9.8656E-05	-0.0046147	-2.4518E-06	-0.1903	-0.00010111	531.2953884684741	43.04	0.76868	43.04	42.839	43.608	0					32	17	3	0	0	0	0.027462	1	2825	2825		42.864	13.715	1	399990	+		24411	30315	19967	19991	27164	27164					0.048574044065162525
KLKSTLEDQ	9	Unmodified	_KLKSTLEDQ_					0	0	0			REV__tr|A0A553SMC5|A0A553SMC5_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22300PE=4SV=1	REV__tr|A0A553SMC5|A0A553SMC5_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22300PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	531.295496	1060.57644	-1.0268	-0.00054553	1.7145	0.00091091	0.68771	0.00036537	531.2962418790462	45.723	0.80174	43.013	42.597	43.399	-2.7097	-0.0135	0.0012092	NaN	42.864	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38422	+		24412	30315	19967	19991							0.048574044065162525
KLKTAILVDII	11	Unmodified	_KLKTAILVDII_					0	0	0			REV__nc|ENSG00000151914|Q03001-3|DST	REV__nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	OvCa9_classI_Rep3	3	409.60736083984375	3	409.607596	1225.80096	1.1396	0.00046679	-0.24169	-9.9E-05	0.89792	0.00036779	409.6074659919173	107.95	5.8573	106.76	106.27	112.13	-1.1978					409	114	4	0	0	0	0.5804	1	7661	7661		46.457	6.3986	1	1037400	+		24413	28928	19968	19992	27165	27165					0.19709139227666128
KLKTALLDI	9	Unmodified	_KLKTALLDI_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4;ACSL4|p.G463Dfs*7|1|0.03|ENSG00000068366|chrX:109668151-109668152|-/AT|frameshift_variant;ACSL4|p.G463Yfs*25|1|0.02|ENSG00000068366|chrX:109668152-109668153|-/AGATTAAAGATGTCAAAGCTAGGTA|frameshift_variant	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	OvCa99_classI_Rep5	1	507.83245849609375	2	507.831517	1013.64848	2.4648	0.0012517	-0.73868	-0.00037513	1.7261	0.00087659	507.8309964975342	86.756	0.82648	86.756	86.471	87.298	0					54	19	4	0	0	0	0.16264	1	9178	9178		82.75	20.643	1	4826500			24414	1390	19969	19993	27166	27166					0.14220363550907678
KLKTAPLPPAS	11	Unmodified	_KLKTAPLPPAS_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98	nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-4|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	OvCa9_classI_Rep2	2	561.8452758789062	2	561.847699	1121.68084	-3.2197	-0.001809	-0.49496	-0.00027809	-3.7146	-0.002087	561.8472802195274	152.47	1.17	152.24	151.83	153	-0.22697					70	23	4	0	0	0	0.70865	1	15477	15477		26.693	1.1189	1	142980			24415	2788;14955	19970	19994	27167	27167					0.12487150953893433
KLKTAPLPPAS	11	Unmodified	_KLKTAPLPPAS_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98;nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98	nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-4|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	OvCa9_classI_Rep3	3	561.8456420898438	2	561.847699	1121.68084	-5.3491	-0.0030054	1.7307	0.0009724	-3.6184	-0.002033	561.8485776281088	152.58	1.5019	151.61	151.19	152.7	-0.97299					81	30	4	0	0	0	0.70142	2	13028	13028;13046		29.17	2.4771	1	218830			24416	2788;14955	19970	19994	27168;27169	27168					0.12487150953893433
KLKTDIKV	8	Unmodified	_KLKTDIKV_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226555150-226558263:-|nuORF;ENST00000413631.1_1_13:111591276-111591579:+|nuORF	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.7485656738281	2	472.810585	943.606617	-0.54017	-0.0002554	-0.24394	-0.00011534	-0.78411	-0.00037074	472.8104186211824	59.666	0.34503	59.666	59.494	59.839	0					13	8	2	0	0	0	0.028476	1	5136	5136		15.642	0	1	343740			24417	5096	19971	19995	27170	27170					0.1325580786236742
KLKTDVLIN	9	Unmodified	_KLKTDVLIN_					0	0	0		ENST00000273064.10_1_2:219459573-219460017:+|nuORF	ENST00000273064.10_1_2:219459573-219460017:+|nuORF	ENST00000273064.10_1_2:219459573-219460017:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	523.3027954101562	2	522.326599	1042.63865	-1.1823	-0.00061755	1.0344	0.0005403	-0.1479	-7.725E-05	522.3269938959569	136.47	0.88583	135.37	135	135.88	-1.1076					29	17	2	0	0	0	0.027462	1	11070	11070		26.693	5.746	1	18980			24418	10006	19972	19996	27171	27171					0.11903175545535305
KLKTISLVI	9	Unmodified	_KLKTISLVI_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	OvCa99_classI_Rep5	1	507.8514404296875	2	507.84971	1013.68487	2.7547	0.001399	-0.80115	-0.00040687	1.9536	0.00099211	507.84920820002236	90.245	1.0042	90.245	89.933	90.938	0					63	24	4	0	0	0	0.26076	1	9652	9652		67.494	7.3754	1	7768300			24419	7740	19973	19997	27172	27172					0.17857240447608547
KLKTNSQPFK	10	Unmodified	_KLKTNSQPFK_					0	0	0		ENSG00000101871|ENST00000317552|MID1;nc|ENSG00000101871|O15344-2|MID1	ENSG00000101871|ENST00000317552|MID1	ENSG00000101871|ENST00000317552|MID1	MULTI-MSMS	OvCa9_classI_Rep2	2	595.8469848632812	2	595.84823	1189.68191	0.72141	0.00042985	-0.76055	-0.00045317	-0.039143	-2.3323E-05	595.8476117202922	29.509	0.77236	26.8	26.636	27.409	-2.7097					30	15	3	0	0	0	0.79917	1	727	727		19.104	0.57247	1	57389			24420	2204	19974	19998	27173	27173					0.09465365322785146
KLKTTFVNVT	10	Unmodified	_KLKTTFVNVT_					0	0	0		ENSG00000196074|ENST00000357552|SYCP2	ENSG00000196074|ENST00000357552|SYCP2	ENSG00000196074|ENST00000357552|SYCP2	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8425903320312	2	575.845156	1149.67576	-4.018	-0.0023138	0.54994	0.00031668	-3.4681	-0.0019971	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.70152	1	12335	12335		30.318	0	1	445630			24421	8559	19975	19999	27174	27174					0.10690847091268552
KLKTVEELL	9	Unmodified	_KLKTVEELL_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.83642578125	2	536.834257	1071.65396	2.2542	0.0012102	-0.40326	-0.00021648	1.851	0.00099367	536.8338796927613	82.524	0.81399	82.524	82.264	83.078	0					55	18	4	0	0	0	0.23241	1	8555	8555		70.816	7.2824	1	1691400			24422	3800	19976	20000	27175	27175					0.12100042342694906
KLKVIYKN	8	Unmodified	_KLKVIYKN_					0	0	0			REV__tr|A0A553SIJ0|A0A553SIJ0_NIACIPeptidaseS8OS=NialliacirculansOX=1397GN=CEQ21_14910PE=3SV=1	REV__tr|A0A553SIJ0|A0A553SIJ0_NIACIPeptidaseS8OS=NialliacirculansOX=1397GN=CEQ21_14910PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	503.32550048828125	2	503.326402	1004.63825	0.14036	7.0648E-05	-0.73987	-0.0003724	-0.59951	-0.00030175	503.32594865659956	112.82	1.9244	112.7	112.28	114.2	-0.12174					111	38	5	0	0	0	0.73938	2	10707	10707;10764		31.955	1.1603	1	946430	+		24423	29895	19977	20001	27176;27177	27176					0.13611800616308756
KLKVIYKN	8	Unmodified	_KLKVIYKN_					0	0	0			REV__tr|A0A553SIJ0|A0A553SIJ0_NIACIPeptidaseS8OS=NialliacirculansOX=1397GN=CEQ21_14910PE=3SV=1	REV__tr|A0A553SIJ0|A0A553SIJ0_NIACIPeptidaseS8OS=NialliacirculansOX=1397GN=CEQ21_14910PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.32647705078125	2	503.326402	1004.63825	0.16092	8.0995E-05	-0.74874	-0.00037686	-0.58781	-0.00029586	503.3259504864153	114.09	2.4187	112.65	112.2	114.61	-1.4461					133	47	5	0	0	0	0.73938	1	10641	10641		31.955	1.4512	1	1182900	+		24424	29895	19977	20001	27178	27178					0.13611800616308756
KLKVIYKNS	9	Unmodified	_KLKVIYKNS_					0	0	0			REV__tr|A0A553SIJ0|A0A553SIJ0_NIACIPeptidaseS8OS=NialliacirculansOX=1397GN=CEQ21_14910PE=3SV=1	REV__tr|A0A553SIJ0|A0A553SIJ0_NIACIPeptidaseS8OS=NialliacirculansOX=1397GN=CEQ21_14910PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	546.839599609375	2	546.842416	1091.67028	-7.0439	-0.0038519	3.2968	0.0018028	-3.7471	-0.0020491	546.8440760274939	158.88	1.6198	157.61	157.26	158.88	-1.267					96	31	5	0	0	0	0.68424	1	13767	13767		21.96	1.9631	1	890150	+		24425	29895	19978	20002	27179	27179					0.1281116829943585
KLKVLDRE	8	Unmodified	_KLKVLDRE_					0	0	0		tr|A0A553SHW0|A0A553SHW0_NIACIDUF4179domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13715PE=4SV=1	tr|A0A553SHW0|A0A553SHW0_NIACIDUF4179domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13715PE=4SV=1	tr|A0A553SHW0|A0A553SHW0_NIACIDUF4179domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13715PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.81146240234375	2	500.811116	999.60768	-0.23852	-0.00011945	-0.2188	-0.00010958	-0.45732	-0.00022903	500.810889421349	59.423	1.378	56.031	55.755	57.133	-3.392					74	27	4	0	0	0	0.61436	1	3959	3959		60.972	2.742	1	926570			24426	33319	19979	20003	27180	27180					0.10786022231263814
KLKVNLYKS	9	Unmodified	_KLKVNLYKS_					0	0	0			REV__tr|A0A7D6W3U7|A0A7D6W3U7_9CLOTBglGfamilytranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11245PE=4SV=1	REV__tr|A0A7D6W3U7|A0A7D6W3U7_9CLOTBglGfamilytranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11245PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.8405151367188	2	546.842416	1091.67028	-6.4593	-0.0035322	2.5386	0.0013882	-3.9208	-0.0021441	546.8437237604664	159.32	1.8651	157.73	157.41	159.27	-1.5858					118	42	5	0	0	0	0.64427	1	15758	15758		26.693	2.4902	1	864300	+		24427	31924	19980	20004	27181	27181					0.12811168299458586
KLKVYPNSL	9	Unmodified	_KLKVYPNSL_					0	0	0			REV__PRKCG|p.D193N|1|0.33|ENSG00000126583|chr19:53891721-53891721|G/A|missense_variant	REV__PRKCG|p.D193N|1|0.33|ENSG00000126583|chr19:53891721-53891721|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.3223876953125	2	531.321317	1060.62808	-2.4606	-0.0013074	2.8506	0.0015146	0.39005	0.00020724	531.3226224591486	119.3	1.5608	117.95	117.58	119.14	-1.3444					58	29	4	0	0	0	0.50149	1	11188	11188		42.396	3.1433	1	134600	+		24428	29317	19981	20005	27182	27182					0.1001919289108173
KLKVYYQQL	9	Unmodified	_KLKVYYQQL_					0	0	0			REV__ENST00000588692.5_1_19:14519750-14520718:-|nuORF	REV__ENST00000588692.5_1_19:14519750-14520718:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	591.296630859375	2	591.847699	1181.68084	0.25005	0.00014799	-3.27	-0.0019353	-3.0199	-0.0017873	591.845580912564	46.375	0.47822	46.375	46.198	46.676	0					19	10	3	0	0	0	0.027462	1	3278	3278		23.042	1.0826	1	180810	+		24429	18627	19982	20006	27183	27183					0.09727150953881392
KLLAAILHL	9	Unmodified	_KLLAAILHL_					0	0	0		MYO7B|p.G920Afs*6|1|0.4|ENSG00000169994|chr2:127608822-127608822|G/-|frameshift_variant;nc|ENSG00000169994|Q6PIF6-2|MYO7B;MYO7B|p.A2010Pfs*5|1|0.38|ENSG00000169994|chr2:127636307-127636307|G/-|frameshift_variant;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B;nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-7|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A;nc|ENSG00000137474|Q13402-3|MYO7A;nc|ENSG00000137474|Q13402-4|MYO7A	MYO7B|p.G920Afs*6|1|0.4|ENSG00000169994|chr2:127608822-127608822|G/-|frameshift_variant;nc|ENSG00000137474|Q13402-8|MYO7A	nc|ENSG00000137474|Q13402-8|MYO7A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.283935546875	2	496.33677	990.658987	-0.041236	-2.0467E-05	-0.10868	-5.3942E-05	-0.14992	-7.4408E-05	496.33646776866175	128.3	0.86789	126.86	126.55	127.42	-1.4357					28	16	3	0	0	0	0.027462	1	12271	12271		20.482	0	1	38773			24430	7062;4586	19983	20007	27184	27184					0.16328390995977315
KLLAAILHL	9	Unmodified	_KLLAAILHL_					0	0	0		MYO7B|p.G920Afs*6|1|0.4|ENSG00000169994|chr2:127608822-127608822|G/-|frameshift_variant;nc|ENSG00000169994|Q6PIF6-2|MYO7B;MYO7B|p.A2010Pfs*5|1|0.38|ENSG00000169994|chr2:127636307-127636307|G/-|frameshift_variant;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B;nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-7|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A;nc|ENSG00000137474|Q13402-3|MYO7A;nc|ENSG00000137474|Q13402-4|MYO7A	MYO7B|p.G920Afs*6|1|0.4|ENSG00000169994|chr2:127608822-127608822|G/-|frameshift_variant;nc|ENSG00000137474|Q13402-8|MYO7A	nc|ENSG00000137474|Q13402-8|MYO7A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	496.33677	990.658987	0.92669	0.00045995	-1.0796	-0.00053583	-0.15289	-7.5885E-05	496.33601085324455	126.78	0.79211	126.55	126.29	127.08	-0.2359	-0.20124	-0.00038158	NaN	20.482	25	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28342			24431	7062;4586	19983	20007							0.16328390995977315
KLLADILNEPI	11	Unmodified	_KLLADILNEPI_					0	0	0			REV__ENSG00000083720|ENST00000196371|OXCT1	REV__ENSG00000083720|ENST00000196371|OXCT1	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8685302734375	2	619.871371	1237.72819	-4.6351	-0.0028732	1.7777	0.0011019	-2.8574	-0.0017712	619.8722316862547	154.7	1.6496	154.47	153.32	154.97	-0.22696					44	35	2	0	0	0	0.72479	1	15762	15762		18.262	0	1	26978	+		24432	17108	19984	20008	27185	27185					0.11883385434225602
KLLCLPHCT	9	Unmodified	_KLLCLPHCT_					0	0	0			REV__ENST00000344293.5_1_10:7866412-8006047:+|nuORF	REV__ENST00000344293.5_1_10:7866412-8006047:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.81396484375	2	514.274998	1026.53544	2.5593	0.0013162	-2.5366	-0.0013045	0.022725	1.1687E-05	514.2733966552953	97.307	0.77214	97.307	96.966	97.738	0					24	17	2	0	0	0	0.027456	1	10667	10667		38.806	0	1	327220	+		24433	24678	19985	20009	27186	27186					0.023236485616962455
KLLDAGDLDI	10	Unmodified	_KLLDAGDLDI_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3052978515625	2	536.797872	1071.58119	1.518	0.00081483	-0.5828	-0.00031285	0.93515	0.00050199	536.7979211503973	112.08	0.60104	112.08	111.83	112.43	0					17	12	2	0	0	0	0.026656	1	12752	12752		65.465	0	1	308380			24434	2095	19986	20010	27187	27187					0.0482628854927043
KLLDAYLLY	9	Unmodified	_KLLDAYLLY_					0	0	0		ENSG00000129562|ENST00000250498|DAD1	ENSG00000129562|ENST00000250498|DAD1	ENSG00000129562|ENST00000250498|DAD1	MULTI-MSMS	OvCa9_classI_Rep3	3	556.3231811523438	2	556.323525	1110.6325	0.84512	0.00047016	-0.93378	-0.00051948	-0.088662	-4.9325E-05	556.3228767199973	126.67	1.4636	125.6	125.28	126.75	-1.0715					78	27	5	0	0	0	0.24951	2	9895	9895;9901		68.787	15.435	1	271850			24435	3935	19987	20011	27188;27189	27188					0.0816065731398794
KLLDFGSLSNL	11	Unmodified	_KLLDFGSLSNL_					0	0	0		ENST00000396783.2_1_6:29457050-29457287:-|nuORF;ENST00000561068.5_3_15:83205554-83208094:-|nuORF;ENST00000423610.1_1_22:32435574-32435880:+|nuORF;ENSG00000182774|ENST00000647841|RPS17	ENST00000396783.2_1_6:29457050-29457287:-|nuORF	ENST00000396783.2_1_6:29457050-29457287:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	603.84228515625	2	603.840071	1205.66559	1.109	0.00066964	1.3462	0.00081287	2.4551	0.0014825	603.8407490915179	132.45	0.56677	132.45	132.18	132.75	0					20	11	2	0	0	0	0.27255	1	15388	15388		70.412	15.328	1	312460			24436	8024	19988	20012	27190	27190					0.07098239366064263
KLLDKDVLT	9	Unmodified	_KLLDKDVLT_					0	0	0			REV__ENSG00000158113|ENST00000339777|LRRC43	REV__ENSG00000158113|ENST00000339777|LRRC43	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.756591796875	2	522.818607	1043.62266	2.2395	0.0011708	-0.059573	-3.1146E-05	2.1799	0.0011397	522.8184657088578	86.574	0.98746	86.574	86.35	87.338	0					50	23	4	0	0	0	0.027418	1	9114	9114		62.107	0	1	4617200	+		24437	20550	19989	20013	27191	27191					0.1025946930860755
KLLDLMPRL	9	Unmodified	_KLLDLMPRL_					0	0	0		INTS4-CYP2R1|1|fusion;ENSG00000149262|ENST00000534064|INTS4;INTS4-ALG8|2|fusion;INTS4-ALG8|1|fusion	INTS4-CYP2R1|1|fusion	INTS4-CYP2R1|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	549.8401489257812	2	549.83882	1097.66309	2.3535	0.001294	0.14757	8.1139E-05	2.5011	0.0013752	549.8386756901125	115.75	1.2035	115.75	115.35	116.55	0					59	25	4	0	0	0	0.10421	2	13231	13210;13231		96.034	35.915	1	1426300			24438	14507	19990	20014	27192;27193	27193					0.1181611242739109
KLLDLQVRV	9	Unmodified	_KLLDLQVRV_					0	0	0		nc|ENSG00000176438|Q6ZMZ3-3|SYNE3;SYNE3|p.T871Ifs*3|1|0.04|ENSG00000176438|chr14:95433335-95433336|GG/-|frameshift_variant;nc|ENSG00000176438|Q6ZMZ3-2|SYNE3;ENSG00000176438|ENST00000682763|SYNE3;ENST00000555759.1_1_14:95904955-95916441:-|nuORF	nc|ENSG00000176438|Q6ZMZ3-3|SYNE3	nc|ENSG00000176438|Q6ZMZ3-3|SYNE3	MULTI-MSMS	OvCa99_classI_Rep5	1	542.35009765625	2	542.347866	1082.68118	2.4227	0.001314	0.47203	0.000256	2.8947	0.00157	542.3480033473961	94.84	0.80911	94.84	94.475	95.284	0					44	18	4	0	0	0	0.1574	1	10338	10338		83.647	16.153	1	2197400			24439	7609	19991	20015	27194	27194					0.143145706737414
KLLDNKNIPL	10	Unmodified	_KLLDNKNIPL_					0	0	0		tr|A0A7D6VQ70|A0A7D6VQ70_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19005PE=4SV=1	tr|A0A7D6VQ70|A0A7D6VQ70_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19005PE=4SV=1	tr|A0A7D6VQ70|A0A7D6VQ70_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19005PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3557739257812	2	584.358431	1166.70231	-2.312	-0.0013511	-1.149	-0.00067141	-3.461	-0.0020225	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.69073	1	14603	14603		31.53	7.0106	1	180810			24440	34825	19992	20016	27195	27195					0.1256253598260173
KLLDPEDISV	10	Unmodified	_KLLDPEDISV_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OvCa9_classI_Rep2	2	564.8101196289062	2	564.810979	1127.6074	0.14442	8.1571E-05	0.53667	0.00030312	0.68109	0.00038469	564.8105319166549	107.08	1.1713	106.77	106.42	107.6	-0.30836					62	23	4	0	0	0	0.57535	1	9996	9996		45.022	2.6261	1	191720			24441	3083	19993	20017	27196	27196					0.048705577207556416
KLLDPEDISV	10	Unmodified	_KLLDPEDISV_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.8112182617188	2	564.810979	1127.6074	-0.66065	-0.00037314	1.1646	0.00065777	0.50393	0.00028463	564.8108679183244	108.48	1.0584	106.75	106.37	107.42	-1.7256					60	20	4	0	0	0	0.24109	1	9928	9928		88.177	40.261	1	227030			24442	3083	19993	20017	27197	27197					0.048705577207556416
KLLDPEDISV	10	Unmodified	_KLLDPEDISV_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	564.810979	1127.6074	-0.066118	-3.7344E-05	0.6466	0.00036521	0.58048	0.00032786	564.8107889132139	107.95	1.1337	106.75	106.43	107.56	-1.1978	0.074798	-6.2857E-05	NaN	88.177	39	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	256880			24443	3083	19993	20017							0.048705577207556416
KLLDRETIS	9	Unmodified	_KLLDRETIS_					0	0	0		ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	OvCa99_classI_Rep5	1	537.813720703125	2	537.811313	1073.60807	-0.24243	-0.00013038	-0.38093	-0.00020487	-0.62336	-0.00033525	537.8111068128071	58.754	0.63708	58.754	58.446	59.083	0					52	15	4	0	0	0	0.1243	1	5041	5041		90.601	2.4239	1	16547000			24444	1705	19994	20018	27198	27198					0.07421397160487686
KLLDYVLVN	9	Unmodified	_KLLDYVLVN_					0	0	0			REV__nc|ENSG00000196199|Q99549-2|MPHOSPH8	REV__nc|ENSG00000196199|Q99549-2|MPHOSPH8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.2998046875	2	538.82115	1075.62775	-0.7519	-0.00040514	-0.37998	-0.00020474	-1.1319	-0.00060988	538.8208732993506	78.122	0.95052	75.305	75.116	76.067	-2.8165					38	19	3	0	0	0	0.027425	1	6314	6314		60.118	0	1	157800	+		24445	22798	19995	20019	27199	27199					0.0929577317122039
KLLEAKVTV	9	Unmodified	_KLLEAKVTV_					0	0	0			REV__nc|ENSG00000156535|Q6YHK3-3|CD109	REV__nc|ENSG00000156535|Q6YHK3-3|CD109	MULTI-MSMS	OvCa99_classI_Rep5	1	500.82623291015625	2	500.823692	999.632832	-0.95751	-0.00047954	0.026145	1.3094E-05	-0.93136	-0.00046645	500.8236157490908	65.966	1.8239	65.966	65.665	67.489	0					89	45	4	0	0	0	0.26076	1	6106	6106		67.494	0	1	23769000	+		24446	20486	19996	20020	27200	27200					0.1330007703385263
KLLEERLL	8	Unmodified	_KLLEERLL_					0	0	0			REV__ENSG00000133858|ENST00000378743|ZFC3H1	REV__ENSG00000133858|ENST00000378743|ZFC3H1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.2666320800781	2	507.321317	1012.62808	-0.076835	-3.898E-05	0.33904	0.000172	0.26221	0.00013302	507.3213852910954	71.13	0.39473	71.13	70.954	71.349	0					16	9	2	0	0	0	0.028476	1	6852	6852		35.618	0	1	457070	+		24447	19161	19997	20021	27201	27201					0.12227192891100458
KLLEGEESRL	10	Unmodified	_KLLEGEESRL_					0	0	0		ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;ENST00000562317.1_1_16:78082520-78083381:-|nuORF;ENST00000548657.5_1_12:52639243-52641994:+|nuORF;ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENST00000552322.5_1_12:52638288-52642544:+|nuORF;CON__Q9DCV7;DTX4-KRT7|1|fusion	ENSG00000170421|ENST00000692008|KRT8;ENSG00000135480|ENST00000331817|KRT7;DTX4-KRT7|1|fusion	ENSG00000170421|ENST00000692008|KRT8	MULTI-MSMS	OvCa99_classI_Rep5	1	587.3287353515625	2	587.327328	1172.6401	-0.27979	-0.00016433	-0.77247	-0.00045369	-1.0523	-0.00061802	587.3269289488549	60.413	1.8785	60.413	60.116	61.994	0					119	44	5	0	0	0	1.729E-07	3	5284	5255;5284;5318		218.58	0	1	35724000		+	24448	622;646;764	19998	20022	27202;27203;27204	27203					0.06068764843621466
KLLEGEESRL	10	Unmodified	_KLLEGEESRL_					0	0	0		ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;ENST00000562317.1_1_16:78082520-78083381:-|nuORF;ENST00000548657.5_1_12:52639243-52641994:+|nuORF;ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENST00000552322.5_1_12:52638288-52642544:+|nuORF;CON__Q9DCV7;DTX4-KRT7|1|fusion	ENSG00000170421|ENST00000692008|KRT8;ENSG00000135480|ENST00000331817|KRT7;DTX4-KRT7|1|fusion	ENSG00000170421|ENST00000692008|KRT8	MULTI-MATCH	OvCa9_classI_Rep2	2		2	587.327328	1172.6401	-2.064	-0.0012123	-7.7596	-0.0045574	-9.8237	-0.0057697	587.3221743764468	62.998	1.2041	60.254	59.744	60.949	-2.7444	-0.079625	-0.0075136	NaN	218.58	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29263		+	24449	622;646;764	19998	20022							0.06068764843621466
KLLEIRAHYFL	11	Unmodified	_KLLEIRAHYFL_					0	0	0			REV__nc|ENSG00000155158|Q5VTQ0-5|TTC39B	REV__nc|ENSG00000155158|Q5VTQ0-5|TTC39B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	468.7856750488281	3	468.278362	1401.81326	-0.032574	-1.5254E-05	4.1083	0.0019238	4.0757	0.0019086	468.28008306743857	79.448	0.61572	76.696	76.37	76.986	-2.7514					18	12	2	0	0	0	0.026221	1	6478	6478		14.086	0	1	37890	+		24450	20416	19999	20023	27205	27205					0.12842175690707336
KLLEIRAHYFL	11	Unmodified	_KLLEIRAHYFL_					0	0	0			REV__nc|ENSG00000155158|Q5VTQ0-5|TTC39B	REV__nc|ENSG00000155158|Q5VTQ0-5|TTC39B	MULTI-MATCH	OvCa9_classI_Rep2	2		3	468.278362	1401.81326	-0.10545	-4.9379E-05	5.2711	0.0024684	5.1657	0.002419	468.2806730711087	78.288	0.89616	76.548	76.406	77.302	-1.7398	-0.073991	0.00021072	NaN	14.086	29	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23583	+		24451	20416	19999	20023							0.12842175690707336
KLLEKAFSI	9	Unmodified	_KLLEKAFSI_					0	0	0		ENSG00000172817|ENST00000310193|CYP7B1;CYP7B1|p.T427Ifs*44|1|0.25|ENSG00000172817|chr8:64596882-64596883|GG/-|frameshift_variant;CYP7B1|p.N116S|1|0.09|ENSG00000172817|chr8:64616194-64616194|T/C|missense_variant	ENSG00000172817|ENST00000310193|CYP7B1	ENSG00000172817|ENST00000310193|CYP7B1	MULTI-MSMS	OvCa99_classI_Rep5	1	524.8245849609375	2	524.823692	1047.63283	2.0327	0.0010668	0.087553	4.595E-05	2.1203	0.0011128	524.823635289974	86.096	1.4276	86.096	85.87	87.298	0					80	34	4	0	0	0	0.030867	1	9058	9058		134.77	21.354	1	10204000			24452	704	20000	20024	27206	27206					0.11092077033845271
KLLEKELKLL	10	Unmodified	_KLLEKELKLL_					0	0	0			REV__nc|ENSG00000110321|P78344-2|EIF4G2	REV__nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-MSMS	OvCa9_classI_Rep3	3	409.60760498046875	3	409.607596	1225.80096	1.1396	0.00046679	-0.24169	-9.9E-05	0.89792	0.00036779	409.6074659919173	107.95	5.8573	106.76	106.27	112.13	-1.1978					409	114	4	0	0	0	0.59317	2	7850	7850;7939		42.864	0	1	1037400	+		24453	17979	20001	20025	27207;27208	27207					0.19709139227666128
KLLEKELKLL	10	Unmodified	_KLLEKELKLL_					0	0	0			REV__nc|ENSG00000110321|P78344-2|EIF4G2	REV__nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-MSMS	OvCa9_classI_Rep4_	4	409.6085205078125	3	409.607596	1225.80096	0.55097	0.00022568	0.25775	0.00010558	0.80871	0.00033125	409.60762934156605	108.64	8.1164	106.92	106.42	114.53	-1.7256					461	158	5	0	0	0	0.55109	3	10005	10005;10272;10295		47.96	5.0953	1	863570	+		24454	17979	20001	20025	27209;27210;27211	27209					0.19709139227666128
KLLEKIKAE	9	Unmodified	_KLLEKIKAE_					0	0	0			REV__ENSG00000198483|ENST00000355594|ANKRD35	REV__ENSG00000198483|ENST00000355594|ANKRD35	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2839965820312	2	536.342249	1070.66995	-0.69114	-0.00037069	-1.0107	-0.00054208	-1.7018	-0.00091277	536.3422248592725	50.486	0.91911	50.486	49.988	50.907	0					36	20	3	0	0	0	0.027452	1	3838	3838		58.23	12.258	1	228130	+		24455	23021	20002	20026	27212	27212					0.13743748579599924
KLLEKIKAE	9	Unmodified	_KLLEKIKAE_					0	0	0			REV__ENSG00000198483|ENST00000355594|ANKRD35	REV__ENSG00000198483|ENST00000355594|ANKRD35	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	536.342249	1070.66995	-1.706	-0.000915	1.3671	0.00073323	-0.3389	-0.00018177	536.3428693923305	53.451	0.45978	50.243	49.995	50.454	-3.208	-0.12183	0.0004122	NaN	58.23	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12742	+		24456	23021	20002	20026							0.13743748579599924
KLLEKVRKV	9	Unmodified	_KLLEKVRKV_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	OvCa99_classI_Rep5	1	556.8784790039062	2	556.879333	1111.74411	-0.28938	-0.00016115	-0.33865	-0.00018859	-0.62803	-0.00034974	556.8791606111793	37.962	1.7491	37.962	37.714	39.463	0					99	38	5	0	0	0	0.051592	3	2129	2107;2129;2154		117.81	26.394	1	6720700			24457	7686	20003	20027	27213;27214;27215	27214					0.19271136461793503
KLLEPVLLL	9	Unmodified	_KLLEPVLLL_					0	0	0		ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-MSMS	OvCa99_classI_Rep5	1	519.3529052734375	2	519.352086	1036.68962	1.3545	0.00070344	1.1648	0.00060492	2.5192	0.0013084	519.3525152048591	134.72	1.5899	134.72	134.43	136.02	0					78	34	4	0	0	0	0.10363	1	15681	15681		96.19	13.885	1	2454500			24458	2427	20004	20028	27216	27216					0.1727412459038078
KLLEPVLLL	9	Unmodified	_KLLEPVLLL_					0	0	0		ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-MSMS	OvCa9_classI_Rep2	2	519.3519897460938	2	519.352086	1036.68962	0.30155	0.00015661	-0.55425	-0.00028785	-0.2527	-0.00013124	519.3516891643123	134.26	1.9111	134.04	133.66	135.57	-0.22696					104	38	4	0	0	0	0.14998	5	13281	13281;13287;13293;13299;13306		84.916	13.62	1	404150			24459	2427	20004	20028	27217;27218;27219;27220;27221	27217					0.1727412459038078
KLLEPVLLL	9	Unmodified	_KLLEPVLLL_					0	0	0		ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-MSMS	OvCa9_classI_Rep3	3	519.3516845703125	2	519.352086	1036.68962	-0.61402	-0.00031889	0.42633	0.00022141	-0.1877	-9.7481E-05	519.3521262310679	135.52	2.0644	134.41	134.06	136.13	-1.1076					107	41	4	0	0	0	0.091859	9	10959	10950;10959;10965;10970;10976;10988;10994;11000;11014		99.375	21.267	1	301720			24460	2427	20004	20028	27222;27223;27224;27225;27226;27227;27228;27229;27230	27223					0.1727412459038078
KLLEPVLLL	9	Unmodified	_KLLEPVLLL_					0	0	0		ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	ENSG00000105193|ENST00000251453|RPS16	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.3516845703125	2	519.352086	1036.68962	2.2497	0.0011684	-2.5058	-0.0013014	-0.2561	-0.00013301	519.3506594761525	135.9	2.4641	134.36	133.96	136.42	-1.5437					118	50	4	0	0	0	0.13482	5	13187	13153;13164;13175;13187;13199		87.754	24.448	1	467750			24461	2427	20004	20028	27231;27232;27233;27234;27235	27234					0.1727412459038078
KLLEPYIR	8	Unmodified	_KLLEPYIR_					0	0	0			REV__nc|ENSG00000164818|Q86Y56-2|DNAAF5	REV__nc|ENSG00000164818|Q86Y56-2|DNAAF5	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.2840576171875	2	516.316035	1030.61752	1.5328	0.00079141	1.0212	0.00052726	2.554	0.0013187	516.3165009244956	135.93	0.47185	135.93	135.73	136.21	0					14	9	2	0	0	0	0.028476	1	15867	15867		35.618	7.736	1	42162	+		24462	21022	20005	20029	27236	27236					0.10343210236624145
KLLESEESRM	10	Unmodified	_KLLESEESRM_					0	0	0		CON__Q8VED5	CON__Q8VED5	CON__Q8VED5	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.31201171875	2	611.31082	1220.60709	0.079052	4.8325E-05	-0.15975	-9.7658E-05	-0.080701	-4.9333E-05	611.3105663206994	76.561	2.3982	73.622	73.175	75.573	-2.9389					110	49	4	0	0	0	0.40664	1	6077	6077		67.494	5.3863	1	879990		+	24463	661	20006	20030	27237	27237					0.005608147292377907
KLLFIKHEE	9	Unmodified	_KLLFIKHEE_					0	0	0			REV__nc|ENSG00000078304|Q13362-2|PPP2R5C	REV__nc|ENSG00000078304|Q13362-2|PPP2R5C	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.7803955078125	2	578.839874	1155.66519	-0.73918	-0.00042787	-3.0355	-0.0017571	-3.7747	-0.002185	578.837955881952	70.39	0.35582	70.39	70.286	70.641	0					12	8	2	0	0	0	0.027461	1	6746	6746		25.574	0	1	407390	+		24464	17023	20007	20031	27238	27238					0.09358864436876502
KLLFKEVK	8	Unmodified	_KLLFKEVK_					0	0	0		ENST00000451085.5_1_7:110731500-110737175:+|nuORF	ENST00000451085.5_1_7:110731500-110737175:+|nuORF	ENST00000451085.5_1_7:110731500-110737175:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	502.8298645019531	2	502.828778	1003.643	-0.60459	-0.00030401	0.2748	0.00013818	-0.3298	-0.00016583	502.82887241526265	98.981	3.0929	97.296	96.904	99.997	-1.685					117	60	4	0	0	0	0.38598	1	6642	6642		90.777	0	1	708720			24465	12044	20008	20032	27239	27239					0.14132684759090353
KLLFKVATI	9	Unmodified	_KLLFKVATI_					0	0	0			REV__nc|ENSG00000175497|Q8N608-4|DPP10	REV__nc|ENSG00000175497|Q8N608-4|DPP10	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.8150024414062	2	516.844428	1031.6743	2.7554	0.0014241	-0.43597	-0.00022533	2.3195	0.0011988	516.8440469287079	97.356	0.60323	97.356	97.093	97.696	0					19	13	2	0	0	0	0.027402	1	10723	10723		47.657	3.5405	1	361840	+		24466	21901	20009	20033	27240	27240					0.15973257793189077
KLLFLLHFIH	10	Unmodified	_KLLFLLHFIH_					0	0	0		L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|174|1|anti-sense	L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|174|1|anti-sense	L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|174|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	428.2677001953125	3	427.600776	1279.7805	-0.7193	-0.00030757	-1.8396	-0.0007866	-2.5589	-0.0010942	427.9345989509148	74.186	0.26193	72.215	72.114	72.376	-1.9711					6	4	2	0	0	0	0.027325	1	6055	6055		16.007	4.3708	1	9609.6			24467	14712	20010	20034	27241	27241					0.15180013358508404
KLLGELHTL	9	Unmodified	_KLLGELHTL_					0	0	0		nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1;nc|ENSG00000078674|Q15154-3|PCM1	nc|ENSG00000078674|Q15154-4|PCM1	nc|ENSG00000078674|Q15154-4|PCM1	MULTI-MSMS	OvCa99_classI_Rep5	1	512.3160400390625	2	512.313492	1022.61243	1.9166	0.00098189	0.38111	0.00019525	2.2977	0.0011771	512.3134965518534	80.718	0.84193	80.718	80.487	81.329	0					39	19	3	0	0	0	0.049969	1	8287	8287		118.74	8.6232	1	2573400			24468	1597	20011	20035	27242	27242					0.10202906374036047
KLLHAALH	8	Unmodified	_KLLHAALH_					0	0	0		ENST00000535177.1_1_11:61121022-61124194:-|nuORF;ENST00000540317.5_1_11:61120455-61129340:-|nuORF;ENSG00000162144|ENST00000294072|CYB561A3;nc|ENSG00000162144|Q8NBI2-2|CYB561A3	ENST00000535177.1_1_11:61121022-61124194:-|nuORF	ENST00000535177.1_1_11:61121022-61124194:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	452.77777099609375	2	451.782162	901.549771	0.73828	0.00033354	-1.1848	-0.00053528	-0.44653	-0.00020174	451.78144994152257	69.501	0.74919	66.686	66.362	67.111	-2.8144					21	14	2	0	0	0	0.028476	1	3099	3099		23.037	4.7123	1	22051			24469	6160	20012	20036	27243	27243					0.09505805096489439
KLLHAALH	8	Unmodified	_KLLHAALH_					0	0	0		ENST00000535177.1_1_11:61121022-61124194:-|nuORF;ENST00000540317.5_1_11:61120455-61129340:-|nuORF;ENSG00000162144|ENST00000294072|CYB561A3;nc|ENSG00000162144|Q8NBI2-2|CYB561A3	ENST00000535177.1_1_11:61121022-61124194:-|nuORF	ENST00000535177.1_1_11:61121022-61124194:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	451.782162	901.549771	1.5339	0.000693	-1.5786	-0.00071317	-0.044642	-2.0168E-05	451.78126086006023	69.111	1.6984	66.49	66.118	67.816	-2.6203	-0.15886	-0.00046513	NaN	23.037	69	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200330			24470	6160	20012	20036							0.09505805096489439
KLLHILTQF	9	Unmodified	_KLLHILTQF_					0	0	0			REV__ENSG00000123643|ENST00000243389|SLC36A1	REV__ENSG00000123643|ENST00000243389|SLC36A1	MULTI-SECPEP	OvCa9_classI_Rep2	2	557.802978515625	2	556.844959	1111.67537	1.7904	0.00099696	4.2123	0.0023456	6.0027	0.0033426	556.8470696545842	65.742	0.99566	63.047	62.72	63.716	-2.6958					40	19	3	0	0	0	0.027455	1	5142	5142		42.396	0	1	74667	+		24471	18652	20013	20037	27244	27244					0.1239947216206474
KLLHSFHSE	9	Unmodified	_KLLHSFHSE_					0	0	0		ENSG00000108559|ENST00000573584|NUP88;ENST00000574087.1_1_17:5290026-5291157:-|nuORF	ENSG00000108559|ENST00000573584|NUP88	ENSG00000108559|ENST00000573584|NUP88	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.8649291992188	2	549.290548	1096.56654	-0.62437	-0.00034296	0.85405	0.00046912	0.22968	0.00012616	549.2918981909977	55.252	0.4907	55.252	55.15	55.641	0					14	11	2	0	0	0	0.027462	1	4534	4534		44.117	12.162	1	526100			24472	2662	20014	20038	27245	27245					0.022122611918121038
KLLHSFHSE	9	Unmodified	_KLLHSFHSE_					0	0	0		ENSG00000108559|ENST00000573584|NUP88;ENST00000574087.1_1_17:5290026-5291157:-|nuORF	ENSG00000108559|ENST00000573584|NUP88	ENSG00000108559|ENST00000573584|NUP88	MULTI-MATCH	OvCa9_classI_Rep2	2		2	549.290548	1096.56654	-0.15947	-8.7597E-05	-0.34903	-0.00019172	-0.5085	-0.00027932	549.2895733970842	58.292	0.20315	55.5	55.373	55.576	-2.792	0.15771	0.00026425	NaN	68.787	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6462.1			24473	2662	20014	20038							0.022122611918121038
KLLHSFHSE	9	Unmodified	_KLLHSFHSE_					0	0	0		ENSG00000108559|ENST00000573584|NUP88;ENST00000574087.1_1_17:5290026-5291157:-|nuORF	ENSG00000108559|ENST00000573584|NUP88	ENSG00000108559|ENST00000573584|NUP88	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	549.290548	1096.56654	-0.41139	-0.00022597	-2.5074	-0.0013773	-2.9188	-0.0016033	549.2887296558348	58.667	0.25013	55.275	55.15	55.4	-3.392	-0.067591	-0.0021069	NaN	68.787	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17943			24474	2662	20014	20038							0.022122611918121038
KLLIGVIAAV	10	Unmodified	_KLLIGVIAAV_					0	0	0		nc|ENSG00000139292|O75473-3|LGR5;nc|ENSG00000139292|O75473-2|LGR5;chr12:71559654-71566404|286|14.54|0.24|5.89|+|ENST00000540815|LGR5,LGR5;ENSG00000139292|ENST00000266674|LGR5	nc|ENSG00000139292|O75473-3|LGR5	nc|ENSG00000139292|O75473-3|LGR5	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.84588623046875	2	498.844428	995.674303	1.0753	0.00053639	-0.93767	-0.00046775	0.13761	6.8644E-05	498.8437988200649	85.649	1.9198	83.003	82.66	84.58	-2.6463					82	38	4	0	0	0	0.39971	1	7221	7221		68.485	10.673	1	395320			24475	334	20015	20039	27246	27246					0.17629257793180386
KLLIGVIAAV	10	Unmodified	_KLLIGVIAAV_					0	0	0		nc|ENSG00000139292|O75473-3|LGR5;nc|ENSG00000139292|O75473-2|LGR5;chr12:71559654-71566404|286|14.54|0.24|5.89|+|ENST00000540815|LGR5,LGR5;ENSG00000139292|ENST00000266674|LGR5	nc|ENSG00000139292|O75473-3|LGR5	nc|ENSG00000139292|O75473-3|LGR5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	498.844428	995.674303	-1.3197	-0.00065833	1.1335	0.00056545	-0.1862	-9.2883E-05	498.8448576066381	85.298	1.9459	83.078	82.744	84.69	-2.2204	0.037533	0.00042515	NaN	68.485	91	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	551460			24476	334	20015	20039							0.17629257793180386
KLLILEKML	9	Unmodified	_KLLILEKML_					0	0	0		ENSG00000203972|ENST00000371197|GLYATL3	ENSG00000203972|ENST00000371197|GLYATL3	ENSG00000203972|ENST00000371197|GLYATL3	MULTI-MSMS	OvCa99_classI_Rep5	1	550.8585205078125	2	550.859221	1099.70389	1.4786	0.00081451	-2.4487	-0.0013489	-0.97012	-0.0005344	550.8576648969632	112.48	0.58653	112.48	112.2	112.79	0					27	12	3	0	0	0	0.13504	1	12797	12797		87.696	10.379	1	458450			24477	8942	20016	20040	27247	27247					0.1580245374700553
KLLILLRGL	9	Unmodified	_KLLILLRGL_					0	0	0		ENST00000512755.1_1_13:33101488-33110480:-|nuORF;ENSG00000244754|ENST00000267068|N4BP2L2;nc|ENSG00000244754|Q92802-2|N4BP2L2;ENST00000475731.1_1_13:33092134-33109967:-|nuORF	ENST00000512755.1_1_13:33101488-33110480:-|nuORF	ENST00000512755.1_1_13:33101488-33110480:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.8196411132812	2	519.87352	1037.73249	3.3342	0.0017334	-4.1103	-0.0021369	-0.7761	-0.00040347	519.8716310202366	133.19	0.64096	131.66	131.16	131.8	-1.5257					20	12	3	0	0	0	0.027462	1	12791	12791		17.365	0	1	26896			24478	9403	20017	20041	27248	27248					0.21512939438480316
KLLIQAAI	8	Unmodified	_KLLIQAAI_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.78125	2	435.294571	868.574589	0.55394	0.00024113	-0.72204	-0.0003143	-0.1681	-7.3174E-05	435.29415429522055	57.271	0.81577	53.926	53.679	54.495	-3.3449					26	15	2	0	0	0	0.028476	1	3743	3743		26.796	13.837	1	19563			24479	1219	20018	20042	27249	27249					0.13504440179224275
KLLISLSSAM	10	Unmodified	_KLLISLSSAM_					0	0	0		ENSG00000197748|ENST00000357060|CFAP43;nc|ENSG00000197748|Q8NDM7-2|CFAP43;nc|ENSG00000197748|Q8NDM7-3|CFAP43	ENSG00000197748|ENST00000357060|CFAP43	ENSG00000197748|ENST00000357060|CFAP43	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8167724609375	2	531.81501	1061.61547	0.089048	4.7357E-05	3.6494	0.0019408	3.7384	0.0019881	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.79917	1	13704	13704		19.104	0	1	263230			24480	8744	20019	20043	27250	27250					0.0871241343654674
KLLITIAP	8	Unmodified	_KLLITIAP_					0	0	0		tr|A0A7D6W3U7|A0A7D6W3U7_9CLOTBglGfamilytranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11245PE=4SV=1	tr|A0A7D6W3U7|A0A7D6W3U7_9CLOTBglGfamilytranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11245PE=4SV=1	tr|A0A7D6W3U7|A0A7D6W3U7_9CLOTBglGfamilytranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11245PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	434.7978515625	2	434.796946	867.57934	2.2892	0.00099533	-0.23897	-0.0001039	2.0502	0.00089143	434.79670000737315	129.71	1.4193	129.71	129.5	130.91	0					51	29	3	0	0	0	0.61758	1	15058	15058		60.294	0	1	536830			24481	35462	20020	20044	27251	27251					0.14025324321971766
KLLKEDAYIK	10	Unmodified	_KLLKEDAYIK_					0	0	0			REV__tr|A0A7D6VVW3|A0A7D6VVW3_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23260PE=4SV=1	REV__tr|A0A7D6VVW3|A0A7D6VVW3_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23260PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	407.5801696777344	3	407.579818	1219.71762	0.61537	0.00025081	-2.9691	-0.0012102	-2.3538	-0.00095934	407.5786357790963	57.72	2.7424	54.928	54.526	57.269	-2.792					151	53	5	0	0	0	0.48398	1	4137	4137		56.434	8.4743	1	1780300	+		24482	31737	20021	20045	27252	27252					0.11655402779774704
KLLKEKYGINT	11	Unmodified	_KLLKEKYGINT_					0	0	0		ENSG00000115128|ENST00000233468|SF3B6	ENSG00000115128|ENST00000233468|SF3B6	ENSG00000115128|ENST00000233468|SF3B6	MULTI-MSMS	OvCa9_classI_Rep3	3	436.261962890625	3	436.262489	1305.76564	1.694	0.00073904	-4.1194	-0.0017972	-2.4254	-0.0010581	436.26077678089143	64.483	2.8395	61.49	61.14	63.98	-2.9933					174	55	5	0	0	0	0.72297	1	2612	2612		21.78	1.75	1	3808000			24483	3063	20022	20046	27253	27253					0.1249847669985229
KLLKELKPQ	9	Unmodified	_KLLKELKPQ_					0	0	0		ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.2828979492188	2	548.858067	1095.70158	-1.2878	-0.00070683	0.71923	0.00039475	-0.56859	-0.00031207	548.8584377431284	43.684	0.60273	43.684	43.393	43.995	0					29	13	3	0	0	0	0.027462	1	2884	2884		34.173	0	1	154450			24484	3608	20023	20047	27254	27254					0.1575574133353257
KLLKHHNSH	9	Unmodified	_KLLKHHNSH_					0	0	0		tr|A0A7D6VPJ9|A0A7D6VPJ9_9CLOTglucose-1-phosphatecytidylyltransferaseOS=ClostridiumintestinaleOX=36845GN=rfbFPE=4SV=1	tr|A0A7D6VPJ9|A0A7D6VPJ9_9CLOTglucose-1-phosphatecytidylyltransferaseOS=ClostridiumintestinaleOX=36845GN=rfbFPE=4SV=1	tr|A0A7D6VPJ9|A0A7D6VPJ9_9CLOTglucose-1-phosphatecytidylyltransferaseOS=ClostridiumintestinaleOX=36845GN=rfbFPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	558.2973022460938	2	557.317432	1112.62031	-0.31216	-0.00017397	-1.115	-0.00062139	-1.4271	-0.00079536	557.3167283198992	108.18	1.7012	106.98	106.07	107.77	-1.1978					64	32	3	0	0	0	0.027462	1	7646	7646		14.137	0	1	132490			24485	34775	20024	20048	27255	27255					0.0685047841418509
KLLKLFQGV	9	Unmodified	_KLLKLFQGV_					0	0	0		nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2	nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	MULTI-MSMS	OvCa99_classI_Rep5	1	523.34326171875	2	523.342052	1044.66955	1.035	0.00054166	1.1503	0.00060198	2.1853	0.0011436	523.3424900672908	93.587	0.74614	93.587	93.305	94.051	0					43	17	4	0	0	0	0.009342	1	10152	10152		172.03	86.672	1	3306800			24486	8948	20025	20049	27256	27256					0.14900373650425536
KLLKNLIGI	9	Unmodified	_KLLKNLIGI_					0	0	0		ENSG00000171115|ENST00000307271|GIMAP8	ENSG00000171115|ENST00000307271|GIMAP8	ENSG00000171115|ENST00000307271|GIMAP8	MULTI-MSMS	OvCa99_classI_Rep5	1	506.35089111328125	2	506.349877	1010.6852	2.1467	0.001087	-0.10025	-5.0761E-05	2.0464	0.0010362	506.3496575715992	93.865	0.97	93.865	93.59	94.56	0					50	22	3	0	0	0	0.12365	1	10189	10189		90.777	0	1	2743500			24487	7173	20026	20050	27257	27257					0.18028660167453836
KLLKPLRPY	9	Unmodified	_KLLKPLRPY_					0	0	0			REV__PIAS2|p.T68Lfs*28|1|0.04|ENSG00000078043|chr18:46890878-46890879|-/TAGGTAAG|frameshift_variant	REV__PIAS2|p.T68Lfs*28|1|0.04|ENSG00000078043|chr18:46890878-46890879|-/TAGGTAAG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.2999877929688	2	564.368601	1126.72265	3.1592	0.001783	-3.357	-0.0018946	-0.19777	-0.00011161	564.3676477013756	100.87	0.7081	100.87	100.61	101.32	0					40	16	4	0	0	0	0.027462	1	11202	11202		21.96	4.4919	1	720930	+		24488	29295	20027	20051	27258	27258					0.16435751433073165
KLLKQLKF	8	Unmodified	_KLLKQLKF_					0	0	0		ENSG00000133226|ENST00000323848|SRRM1;nc|ENSG00000133226|Q8IYB3-2|SRRM1;ENST00000462710.5_1_1:24969817-24973316:+|nuORF	ENSG00000133226|ENST00000323848|SRRM1	ENSG00000133226|ENST00000323848|SRRM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.25726318359375	2	509.344595	1016.67464	1.6004	0.00081515	1.0306	0.00052495	2.631	0.0013401	509.3449014434223	91.212	0.65265	91.212	91.016	91.668	0					25	15	3	0	0	0	0.028476	1	9869	9869		33.516	0	1	509560			24489	4213	20028	20052	27259	27259					0.1669667751303905
KLLKVKNDP	9	Unmodified	_KLLKVKNDP_					0	0	0			REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9	REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.8165283203125	2	527.834591	1053.65463	-0.87506	-0.00046189	0.055739	2.9421E-05	-0.81932	-0.00043247	527.8347953558856	105.6	1.5727	103.58	103.25	104.82	-2.0161					56	30	3	0	0	0	0.027462	1	9675	9675		24.203	0	1	303840	+		24490	17178	20029	20053	27260	27260					0.12994881782401535
KLLLCRGEL	9	Unmodified	_KLLLCRGEL_					0	0	0			REV__ENST00000429587.2_1_12:123738103-123738388:+|nuORF	REV__ENST00000429587.2_1_12:123738103-123738388:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.7839965820312	2	522.815344	1043.61614	-1.2384	-0.00064747	-2.6854	-0.001404	-3.9239	-0.0020515	522.8138178388208	66.251	1.619	62.761	62.418	64.037	-3.4902					60	32	3	0	0	0	0.027453	1	4767	4767		37.812	0	1	451530	+		24491	25701	20030	20054	27261	27261					0.0960725287625337
KLLLDELK	8	Unmodified	_KLLLDELK_					0	0	0			REV__nc|ENSG00000006747|Q9Y6U3-2|SCIN	REV__nc|ENSG00000006747|Q9Y6U3-2|SCIN	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.79840087890625	2	486.310418	970.606283	2.1169	0.0010295	0.32476	0.00015793	2.4416	0.0011874	486.3105132570313	95.677	0.88577	95.677	95.41	96.296	0					30	20	2	0	0	0	0.028476	1	10441	10441		35.618	0	1	406740	+		24492	28703	20031	20055	27262	27262					0.11980388142524134
KLLLDRGGQI	10	Unmodified	_KLLLDRGGQI_					0	0	0		ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;nc|ENSG00000145362|Q01484-5|ANK2	ENSG00000145362|ENST00000357077|ANK2	ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	OvCa99_classI_Rep5	1	556.8428344726562	2	556.842948	1111.67134	-0.92547	-0.00051534	-1.3117	-0.00073041	-2.2372	-0.0012458	556.8429307848965	63.938	1.3089	63.938	63.607	64.916	0					79	31	5	0	0	0	0.20836	1	5810	5810		93.143	8.2277	1	7605900			24493	5218	20032	20056	27263	27263					0.11997382668391765
KLLLEILVT	9	Unmodified	_KLLLEILVT_					0	0	0			REV__tr|A0A553SQ01|A0A553SQ01_NIACIZn-dependenthydrolaseOS=NialliacirculansOX=1397GN=CEQ21_15835PE=3SV=1	REV__tr|A0A553SQ01|A0A553SQ01_NIACIZn-dependenthydrolaseOS=NialliacirculansOX=1397GN=CEQ21_15835PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.7761840820312	2	521.349543	1040.68453	-1.002	-0.00052239	-2.3111	-0.0012049	-3.3131	-0.0017273	521.3482074049924	59.901	0.54795	59.901	59.647	60.195	0					29	13	3	0	0	0	0.027462	1	5155	5155		6.7355	0	1	885190	+		24494	30591	20033	20057	27264	27264					0.16581820727765262
KLLLFEYRHRK	11	Unmodified	_KLLLFEYRHRK_					0	0	0		ENSG00000184194|ENST00000332582|GPR173	ENSG00000184194|ENST00000332582|GPR173	ENSG00000184194|ENST00000332582|GPR173	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.6327209472656	3	501.636661	1501.88815	-6.8749	-0.0034487	1.0286	0.000516	-5.8463	-0.0029327	501.63750106294935	161.08	3.6355	159.45	157.11	160.75	-1.6239					206	87	3	0	0	0	0.72555	1	15840	15840		8.4073	1.0075	1	47462			24495	8135	20034	20058	27265	27265					0.15728358221895178
KLLLMGDIV	9	Unmodified	_KLLLMGDIV_					0	0	0			REV__nc|ENSG00000198848|P23141-3|CES1	REV__nc|ENSG00000198848|P23141-3|CES1	MULTI-MSMS	OvCa99_classI_Rep5	1	501.3074645996094	2	501.306821	1000.59909	-0.74328	-0.00037261	3.9076	0.0019589	3.1643	0.0015863	501.3085932011091	44.462	0.49335	44.462	44.169	44.662	0					23	10	3	0	0	0	0.27546	1	3001	3001		65.803	4.8312	1	974460	+		24496	23079	20035	20059	27266	27266					0.09881332270447274
KLLLPILLP	9	Unmodified	_KLLLPILLP_					0	0	0			REV__tr|A0A553SG54|A0A553SG54_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10165PE=4SV=1	REV__tr|A0A553SG54|A0A553SG54_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10165PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.749755859375	2	510.364996	1018.71544	-0.13397	-6.8374E-05	-2.8604	-0.0014598	-2.9943	-0.0015282	510.86501270993034	43.233	0.12623	43.233	43.143	43.27	0					4	2	2	0	0	0	0.027462	1	2827	2827		0	0	1	18380	+		24497	29663	20036	20060	27267	27267					0.20683018832653488
KLLLTFAQG	9	Unmodified	_KLLLTFAQG_					0	0	0			REV__ENST00000462829.2_1_12:132624288-132624495:-|nuORF	REV__ENST00000462829.2_1_12:132624288-132624495:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.7902526855469	2	495.80276	989.590967	-0.11178	-5.5419E-05	-0.6081	-0.0003015	-0.71988	-0.00035692	495.80230081420774	116.5	1.7668	115.13	114.89	116.66	-1.3645					70	33	3	0	0	0	0.027459	1	11021	11021		36.447	0	1	169400	+		24498	22485	20037	20061	27268	27268					0.09575521345323068
KLLMIFIY	8	Unmodified	_KLLMIFIY_					0	0	0		tr|A0A7D6ZE88|A0A7D6ZE88_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_12700PE=4SV=1	tr|A0A7D6ZE88|A0A7D6ZE88_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_12700PE=4SV=1	tr|A0A7D6ZE88|A0A7D6ZE88_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_12700PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.8109741210938	2	520.814282	1039.61401	0.69509	0.00036201	1.3627	0.00070969	2.0577	0.0010717	520.8148931926606	90.835	1.1383	90.835	90.615	91.753	0					37	27	2	0	0	0	0.028476	1	9746	9746		28.254	0	1	1155600			24499	35477	20038	20062	27269	27269					0.09578824138452546
KLLMTTKIP	9	Oxidation (M)	_KLLM(Oxidation (M))TTKIP_		KLLM(1)TTKIP		KLLM(53)TTKIP	0	0	1			REV__ENST00000461662.1_1_1:186386602-186388205:+|nuORF	REV__ENST00000461662.1_1_1:186386602-186388205:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	530.825439453125	2	530.825378	1059.6362	1.1126	0.0005906	-3.4562	-0.0018346	-2.3436	-0.001244	530.8235397713008	155.16	0.54883	155.16	154.93	155.48	0					15	10	2	0	0	0	0.38969	1	18185	18185		52.937	8.5595	1	72476	+		24500	20514	20039	20063	27270	27270		478			0.10877003816176511
KLLNIQQQL	9	Unmodified	_KLLNIQQQL_					0	0	0		nc|ENSG00000128487|Q5M775-5|SPECC1;nc|ENSG00000128487|Q5M775-3|SPECC1;nc|ENSG00000128487|Q5M775-2|SPECC1;nc|ENSG00000128487|Q5M775-4|SPECC1;ENSG00000128487|ENST00000395527|SPECC1	nc|ENSG00000128487|Q5M775-5|SPECC1	nc|ENSG00000128487|Q5M775-5|SPECC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.2626342773438	2	549.337498	1096.66044	1.6195	0.00088966	0.13668	7.5086E-05	1.7562	0.00096475	549.3374224809941	92.11	0.63546	92.11	91.879	92.515	0					30	14	3	0	0	0	0.027461	1	9942	9942		58.782	5.4305	1	1736400			24501	3881	20040	20064	27271	27271					0.11597980294095578
KLLNPNGTTK	10	Unmodified	_KLLNPNGTTK_					0	0	0		tr|A0A7D7A2C0|A0A7D7A2C0_9CLOTFlppilusassemblyproteinRcpC/CpaBdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07895PE=4SV=1	tr|A0A7D7A2C0|A0A7D7A2C0_9CLOTFlppilusassemblyproteinRcpC/CpaBdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07895PE=4SV=1	tr|A0A7D7A2C0|A0A7D7A2C0_9CLOTFlppilusassemblyproteinRcpC/CpaBdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07895PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.3184814453125	2	543.319306	1084.62406	0.23976	0.00013027	-2.7401	-0.0014887	-2.5003	-0.0013585	543.3177057743393	34.411	1.1529	31.623	31.349	32.502	-2.7881					48	22	3	0	0	0	0.65849	1	1036	1036		35.152	0.97948	1	218380			24502	36072	20041	20065	27272	27272					0.08513103397353916
KLLNRLSLI	9	Unmodified	_KLLNRLSLI_					0	0	0			REV__ENST00000553480.1_1_14:45329665-45330565:-|nuORF	REV__ENST00000553480.1_1_14:45329665-45330565:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.7763671875	2	535.358234	1068.70191	-1.5115	-0.00080918	0.78575	0.00042066	-0.72573	-0.00038853	535.3586610299494	76.212	0.7321	74.358	74.149	74.881	-1.854					26	13	3	0	0	0	0.027462	1	6279	6279		26.693	1.1189	1	40982	+		24503	27514	20042	20066	27273	27273					0.1703116105340996
KLLNYAPLEK	10	Unmodified	_KLLNYAPLEK_					0	0	0		ENSG00000177700|ENST00000322028|POLR2L	ENSG00000177700|ENST00000322028|POLR2L	ENSG00000177700|ENST00000322028|POLR2L	MULTI-MSMS	OvCa9_classI_Rep2	2	594.853759765625	2	594.852981	1187.69141	-0.96358	-0.00057319	0.15236	9.0631E-05	-0.81123	-0.00048256	594.853035810674	77.023	2.1571	75.234	74.793	76.95	-1.7894					146	41	5	0	0	0	7.5747E-08	10	6393	6375;6381;6387;6393;6399;6405;6412;6419;6426;6432		227.99	89.925	1	4123600			24504	7705	20043	20067	27274;27275;27276;27277;27278;27279;27280;27281;27282;27283	27277					0.10507133608325603
KLLNYAPLEK	10	Unmodified	_KLLNYAPLEK_					0	0	0		ENSG00000177700|ENST00000322028|POLR2L	ENSG00000177700|ENST00000322028|POLR2L	ENSG00000177700|ENST00000322028|POLR2L	MULTI-MSMS	OvCa9_classI_Rep3	3	594.8530883789062	2	594.852981	1187.69141	-0.24714	-0.00014701	-0.31923	-0.00018989	-0.56637	-0.0003369	594.852831528091	77.826	2.5094	75.473	74.838	77.348	-2.3527					172	49	5	0	0	0	3.7364E-13	15	4109	4069;4074;4080;4086;4092;4098;4103;4109;4115;4121;4128;4135;4142;4148;4155		257.27	104.32	1	5052500			24505	7705	20043	20067	27284;27285;27286;27287;27288;27289;27290;27291;27292;27293;27294;27295;27296;27297;27298	27291					0.10507133608325603
KLLNYAPLEK	10	Unmodified	_KLLNYAPLEK_					0	0	0		ENSG00000177700|ENST00000322028|POLR2L	ENSG00000177700|ENST00000322028|POLR2L	ENSG00000177700|ENST00000322028|POLR2L	MULTI-MSMS	OvCa9_classI_Rep4_	4	594.8546142578125	2	594.852981	1187.69141	0.40793	0.00024266	-1.292	-0.00076857	-0.88411	-0.00052591	594.8521802010656	78.177	2.1445	75.36	75.018	77.163	-2.8165					153	44	5	0	0	0	2.6882E-08	5	6309	6271;6283;6295;6309;6323		232.83	100.85	1	5165200			24506	7705	20043	20067	27299;27300;27301;27302;27303	27302					0.10507133608325603
KLLPGDIHQI	10	Unmodified	_KLLPGDIHQI_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1;DOCK1-NPS|1|fusion	nc|ENSG00000150760|Q14185|DOCK1	nc|ENSG00000150760|Q14185|DOCK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.3133544921875	2	567.337498	1132.66044	2.0306	0.001152	-0.1167	-6.621E-05	1.9139	0.0010858	567.3372360790147	80.76	0.50771	80.76	80.529	81.037	0					32	11	4	0	0	0	0.019318	1	8294	8294		190.62	47.603	1	2139600			24507	5517	20044	20068	27304	27304					0.099419802940929
KLLPGKKS	8	Unmodified	_KLLPGKKS_					0	0	0		nc|ENSG00000134313|Q9ULH0-5|KIDINS220;KIDINS220|p.H1622Qfs*20|1|0.07|ENSG00000134313|chr2:8731170-8731171|-/CACTTTGTTGGCAATTTTTAAAGCCC|frameshift_variant;KIDINS220|p.L1658*|1|0.1|ENSG00000134313|chr2:8731063-8731063|A/-|frameshift_variant;nc|ENSG00000134313|Q9ULH0-2|KIDINS220;ENST00000488729.5_1_2:8870852-8965899:-|nuORF;nc|ENSG00000134313|Q9ULH0-4|KIDINS220;ENSG00000134313|ENST00000256707|KIDINS220	nc|ENSG00000134313|Q9ULH0-5|KIDINS220	nc|ENSG00000134313|Q9ULH0-5|KIDINS220	MULTI-SECPEP	OvCa99_classI_Rep5	1	436.7650146484375	2	435.792195	869.569838	0.047655	2.0768E-05	0.011412	4.9734E-06	0.059067	2.5741E-05	435.7921196888168	66.293	0.47244	66.293	66.059	66.531	0					25	11	3	0	0	0	0.028476	1	6158	6158		35.618	0	1	660100			24508	4279	20045	20069	27305	27305					0.12983556036476784
KLLPKYQVK	9	Unmodified	_KLLPKYQVK_					0	0	0		ENSG00000124279|ENST00000264669|FASTKD3	ENSG00000124279|ENST00000264669|FASTKD3	ENSG00000124279|ENST00000264669|FASTKD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.8216552734375	2	558.860609	1115.70667	1.4993	0.0008379	0.83088	0.00046435	2.3302	0.0013022	558.8609203189923	90.947	1.3054	90.947	90.615	91.92	0					78	31	4	0	0	0	0.027448	1	9756	9756		53.351	2.016	1	3458600			24509	3644	20046	20070	27306	27306					0.1534404519616146
KLLPLHHL	8	Unmodified	_KLLPLHHL_					0	0	0		ENST00000412997.5_1_3:20212682-20215785:-|nuORF	ENST00000412997.5_1_3:20212682-20215785:-|nuORF	ENST00000412997.5_1_3:20212682-20215785:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.242919921875	2	485.813462	969.612371	0.014776	7.1786E-06	-4.2622	-0.0020706	-4.2474	-0.0020635	485.81131025180855	58.314	0.50094	58.314	58.112	58.613	0					20	11	3	0	0	0	0.028476	1	4982	4982		35.201	25.73	1	416170			24510	11557	20047	20071	27307	27307					0.12634951164693575
KLLPLIVQC	9	Unmodified	_KLLPLIVQC_					0	0	0			REV__ENSG00000159131|ENST00000381815|GART	REV__ENSG00000159131|ENST00000381815|GART	MSMS	OvCa9_classI_Rep2	2	513.8233642578125	2	513.822638	1025.63072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.956	1	64.295	63.795	64.795	-2.661								0	0	0	0.18203	1	5212	5212		31.955	5.1588	1		+		24511	20597	20048	20072	27308	27308					0.1189332502437992
KLLPLLHPL	9	Unmodified	_KLLPLLHPL_					0	0	0			REV__ENSG00000105576|ENST00000425528|TNPO2	REV__ENSG00000105576|ENST00000425528|TNPO2	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.7969360351562	2	522.35242	1042.69029	-0.85651	-0.0004474	-3.0827	-0.0016103	-3.9392	-0.0020577	522.3506479650573	54.302	0.62419	54.302	54.008	54.632	0					23	14	2	0	0	0	0.027462	1	4355	4355		12.959	0	1	179010	+		24512	17738	20049	20073	27309	27309					0.17064964030078045
KLLPTALL	8	Unmodified	_KLLPTALL_					0	0	0			REV__ENST00000349228.8_1_17:7462268-7463366:+|nuORF	REV__ENST00000349228.8_1_17:7462268-7463366:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	434.7972717285156	2	434.796946	867.57934	2.2892	0.00099533	-0.23897	-0.0001039	2.0502	0.00089143	434.79670000737315	129.71	1.4193	129.71	129.5	130.91	0					51	29	3	0	0	0	0.62934	1	15034	15034		57.811	0.35863	1	536830	+		24513	24714	20050	20074	27310	27310					0.14025324321983135
KLLPYIVGV	9	Unmodified	_KLLPYIVGV_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;COL6A3|p.T1393Cfs*9|1|0.09|ENSG00000163359|chr2:237371828-237371840|GCTCCCGGAAGGT/-|frameshift_variant;COL6A3|p.K1001Nfs*34|1|0.23|ENSG00000163359|chr2:237376800-237376839|TTTTAAGAGATTCACTATCTGTGGATGAAGATCTCCAATC/-|frameshift_variant;COL6A3|p.L475Ifs*14|1|0.13|ENSG00000163359|chr2:237381374-237381389|CCTGTCCGATTTCCAG/-|frameshift_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	501.3246765136719	2	501.323328	1000.6321	2.3274	0.0011668	-0.30905	-0.00015493	2.0183	0.0010118	501.3230418421581	120.98	1.5263	120.98	120.74	122.27	0					80	33	4	0	0	0	0.064607	2	13928	13903;13928		110.34	21.694	1	4348100			24514	6293	20051	20075	27311;27312	27312					0.1318128238481222
KLLPYIVGV	9	Unmodified	_KLLPYIVGV_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;COL6A3|p.T1393Cfs*9|1|0.09|ENSG00000163359|chr2:237371828-237371840|GCTCCCGGAAGGT/-|frameshift_variant;COL6A3|p.K1001Nfs*34|1|0.23|ENSG00000163359|chr2:237376800-237376839|TTTTAAGAGATTCACTATCTGTGGATGAAGATCTCCAATC/-|frameshift_variant;COL6A3|p.L475Ifs*14|1|0.13|ENSG00000163359|chr2:237381374-237381389|CCTGTCCGATTTCCAG/-|frameshift_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.3222961425781	2	501.323328	1000.6321	-0.12213	-6.1226E-05	-0.13981	-7.0091E-05	-0.26194	-0.00013132	501.3230111158021	122.98	0.99181	121.62	121.31	122.3	-1.3666					43	19	3	0	0	0	0.34496	2	11619	11619;11630		57.811	9.8957	1	54240			24515	6293	20051	20075	27313;27314	27313					0.1318128238481222
KLLPYIVGV	9	Unmodified	_KLLPYIVGV_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;COL6A3|p.T1393Cfs*9|1|0.09|ENSG00000163359|chr2:237371828-237371840|GCTCCCGGAAGGT/-|frameshift_variant;COL6A3|p.K1001Nfs*34|1|0.23|ENSG00000163359|chr2:237376800-237376839|TTTTAAGAGATTCACTATCTGTGGATGAAGATCTCCAATC/-|frameshift_variant;COL6A3|p.L475Ifs*14|1|0.13|ENSG00000163359|chr2:237381374-237381389|CCTGTCCGATTTCCAG/-|frameshift_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	501.323328	1000.6321	1.0171	0.00050988	-1.3741	-0.00068889	-0.35707	-0.00017901	501.3224921702021	122.62	0.94517	121.6	121.32	122.27	-1.0286	-0.010738	-0.00056224	NaN	57.811	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56189			24516	6293	20051	20075							0.1318128238481222
KLLQEARTDK	10	Unmodified	_KLLQEARTDK_					0	0	0			REV__tr|A0A7D6ZX68|A0A7D6ZX68_9CLOTDiadenylatecyclaseOS=ClostridiumintestinaleOX=36845GN=dacAPE=3SV=1	REV__tr|A0A7D6ZX68|A0A7D6ZX68_9CLOTDiadenylatecyclaseOS=ClostridiumintestinaleOX=36845GN=dacAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	401.23419189453125	3	401.234822	1200.68264	1.4878	0.00059696	-3.2934	-0.0013214	-1.8056	-0.00072446	401.2334021354235	31.885	0.74577	31.885	31.708	32.453	0					50	14	7	0	0	0	0.57535	1	1345	1345		45.022	0	1	763170	+		24517	32317	20052	20076	27315	27315					0.09032159971820874
KLLQGLGAT	9	Unmodified	_KLLQGLGAT_					0	0	0			REV__nc|ENSG00000130023|Q5T6L9-4|ERMARD	REV__nc|ENSG00000130023|Q5T6L9-4|ERMARD	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.2247619628906	2	450.779285	899.544017	1.2945	0.00058353	-1.2757	-0.00057505	0.01883	8.4883E-06	450.7785333166694	97.627	1.4679	95.249	94.758	96.226	-2.3786					64	28	4	0	0	0	0.027462	1	8764	8764		9.7057	0	1	132660	+		24518	18915	20053	20077	27316	27316					0.09022661794188025
KLLQTQRK	8	Unmodified	_KLLQTQRK_					0	0	0		nc|ENSG00000166669|Q5U623-2|ATF7IP2	nc|ENSG00000166669|Q5U623-2|ATF7IP2	nc|ENSG00000166669|Q5U623-2|ATF7IP2	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.8136291503906	2	507.824558	1013.63456	-0.75777	-0.00038481	0.75916	0.00038552	0.0013885	7.0512E-07	507.8250725411232	74.407	1.0293	71.996	71.697	72.726	-2.4106					38	20	3	0	0	0	0.028476	1	3744	3744		27.882	0	1	42776			24519	15157	20054	20078	27317	27317					0.12829130842476388
KLLRAKKAE	9	Unmodified	_KLLRAKKAE_					0	0	0		ENSG00000266074|ENST00000675386|BAHCC1;nc|ENSG00000266074|Q9P281|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.3106689453125	2	528.848033	1055.68151	-0.67014	-0.0003544	0.12261	6.4844E-05	-0.54752	-0.00028956	528.8481213437648	48.064	0.55976	44.957	44.684	45.244	-3.1077					14	10	2	0	0	0	0.027462	1	2629	2629		21.96	4.5949	1	11256			24520	9526	20055	20079	27318	27318					0.15589990393596054
KLLRFAVD	8	Unmodified	_KLLRFAVD_					0	0	0		nc|ENSG00000119760|O94864-4|SUPT7L;nc|ENSG00000119760|O94864-2|SUPT7L;ENSG00000119760|ENST00000337768|SUPT7L	nc|ENSG00000119760|O94864-4|SUPT7L	nc|ENSG00000119760|O94864-4|SUPT7L	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.2513732910156	2	481.295102	960.575651	-0.35959	-0.00017307	-0.15681	-7.5473E-05	-0.5164	-0.00024854	481.294678086559	43.304	0.55098	43.304	43.143	43.694	0					19	12	2	0	0	0	0.028476	1	2828	2828		20.947	0	1	211230			24521	3393	20056	20080	27319	27319					0.09378654548129362
KLLRLFNS	8	Unmodified	_KLLRLFNS_					0	0	0		ENSG00000172986|ENST00000389617|GXYLT2	ENSG00000172986|ENST00000389617|GXYLT2	ENSG00000172986|ENST00000389617|GXYLT2	MULTI-MSMS	OvCa9_classI_Rep3	3	495.80670166015625	2	495.808377	989.6022	-3.0687	-0.0015215	-1.3757	-0.00068209	-4.4444	-0.0022036	495.80768519755566	143.85	1.3844	142.86	142.49	143.87	-0.9903					67	27	4	0	0	0	0.74595	1	11959	11959		14.664	0	1	103180			24522	7338	20057	20081	27320	27320					0.10698343439469227
KLLRLIENT	9	Unmodified	_KLLRLIENT_					0	0	0			REV__tr|A0A553SR16|A0A553SR16_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00145PE=3SV=1	REV__tr|A0A553SR16|A0A553SR16_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00145PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.825439453125	2	550.345323	1098.67609	-0.80917	-0.00044533	0.35858	0.00019734	-0.4506	-0.00024798	550.3454137789981	33.848	0.76561	33.848	33.632	34.398	0					34	15	4	0	0	0	0.027462	1	1625	1625		12.812	0	1	840930	+		24523	30681	20058	20082	27321	27321					0.1307026681113257
KLLSATGESEK	11	Unmodified	_KLLSATGESEK_					0	0	0		ENST00000552128.2_1_12:71519116-71532942:-|nuORF;ENSG00000127324|ENST00000247829|TSPAN8	ENST00000552128.2_1_12:71519116-71532942:-|nuORF	ENST00000552128.2_1_12:71519116-71532942:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	581.819091796875	2	581.819335	1161.62412	-1.0989	-0.00063935	1.7893	0.0010411	0.69044	0.00040171	581.8202663764829	48.77	1.338	46.01	45.679	47.017	-2.7603					67	26	4	0	0	0	0.4646	1	3066	3066		56.434	0.92959	1	330180			24524	3824	20059	20083	27322	27322					0.04977058606687024
KLLSDKSLL	9	Unmodified	_KLLSDKSLL_					0	0	0		tr|A0A553SNA4|A0A553SNA4_NIACISporulationhistidinekinaseinhibitorSdaOS=NialliacirculansOX=1397GN=CEQ21_24095PE=4SV=1	tr|A0A553SNA4|A0A553SNA4_NIACISporulationhistidinekinaseinhibitorSdaOS=NialliacirculansOX=1397GN=CEQ21_24095PE=4SV=1	tr|A0A553SNA4|A0A553SNA4_NIACISporulationhistidinekinaseinhibitorSdaOS=NialliacirculansOX=1397GN=CEQ21_24095PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.8199462890625	2	508.82115	1015.62775	2.0075	0.0010214	0.3705	0.00018852	2.378	0.00121	508.8211056611644	82.893	0.68378	82.893	82.394	83.078	0					30	15	3	0	0	0	0.26076	1	8600	8600		67.494	2.0283	1	998840			24525	33912	20060	20084	27323	27323					0.120557731712438
KLLSHDLPH	9	Unmodified	_KLLSHDLPH_					0	0	0		nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2;ENST00000580882.5_1_17:26966325-26972074:-|nuORF	nc|ENSG00000007202|Q14667-2|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-MSMS	OvCa9_classI_Rep2	2	530.299072265625	2	530.300916	1058.58728	-0.044695	-2.3702E-05	-4.0298	-0.002137	-4.0745	-0.0021607	530.2986629314781	30.396	1.3311	27.686	27.458	28.789	-2.7097					67	26	4	0	0	0	0.42676	1	849	849		49.442	3.4693	1	398640			24526	896	20061	20085	27324	27324					0.0603285157146729
KLLSSTLIP	9	Unmodified	_KLLSSTLIP_					0	0	0		nc|ENSG00000119684|Q9UHC1-2|MLH3;ENSG00000119684|ENST00000355774|MLH3	nc|ENSG00000119684|Q9UHC1-2|MLH3	nc|ENSG00000119684|Q9UHC1-2|MLH3	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.29058837890625	2	486.310418	970.606283	1.3976	0.00067968	0.83942	0.00040822	2.237	0.0010879	486.31076851153597	101.28	0.88572	101.28	100.98	101.87	0					32	20	2	0	0	0	0.027462	1	11328	11328		23.042	6.5693	1	758900			24527	3381	20062	20086	27325	27325					0.11980388142535503
KLLTKKYE	8	Unmodified	_KLLTKKYE_					0	0	0			REV__ANXA6|p.M433Tfs*8|1|0.17|ENSG00000197043|chr5:151122196-151122197|-/GGAGAAAGGCTGCCTGAGAG|frameshift_variant	REV__ANXA6|p.M433Tfs*8|1|0.17|ENSG00000197043|chr5:151122196-151122197|-/GGAGAAAGGCTGCCTGAGAG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.7804565429688	2	511.815867	1021.61718	-1.503	-0.00076926	-1.2056	-0.00061707	-2.7087	-0.0013863	511.81505308667624	50.382	2.4999	47.24	46.61	49.11	-3.1416					108	48	4	0	0	0	0.028476	1	2835	2835		37.159	0	1	301000	+		24528	15640	20063	20087	27326	27326					0.10723790516794907
KLLTNLCKL	9	Carbamidomethyl (C)	_KLLTNLC(Carbamidomethyl (C))KL_	KLLTNLC(1)KL		KLLTNLC(77)KL		0	1	0		tr|A0A553SJ45|A0A553SJ45_NIACIRestrictionendonucleaseOS=NialliacirculansOX=1397GN=CEQ21_16075PE=4SV=1	tr|A0A553SJ45|A0A553SJ45_NIACIRestrictionendonucleaseOS=NialliacirculansOX=1397GN=CEQ21_16075PE=4SV=1	tr|A0A553SJ45|A0A553SJ45_NIACIRestrictionendonucleaseOS=NialliacirculansOX=1397GN=CEQ21_16075PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	551.8344116210938	2	551.836277	1101.658	-1.4468	-0.00079841	-1.7713	-0.00097749	-3.2182	-0.0017759	551.8352363148457	101.35	1.3104	99.741	99.446	100.76	-1.6053					67	24	4	0	0	0	0.19758	1	6950	6950		76.774	7.9873	1	510450			24529	33462	20064	20088	27327	27327	379				0.11123808564775572
KLLTPITTL	9	Unmodified	_KLLTPITTL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	500.32733154296875	2	500.326068	998.637583	0.97935	0.00049	1.1238	0.00056224	2.1031	0.0010522	500.32645340032605	105.75	0.78613	105.75	105.44	106.23	0					52	17	4	0	0	0	0.049969	2	11890	11870;11890		118.74	27.879	1	3561000			24530	6293	20065	20089	27328;27329	27329					0.1382096117661149
KLLTSNWLSI	10	Unmodified	_KLLTSNWLSI_					0	0	0			REV__ENST00000286428.5_1_X:154448526-154455520:+|nuORF	REV__ENST00000286428.5_1_X:154448526-154455520:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	587.815185546875	2	587.845156	1173.67576	-1.0487	-0.00061645	-0.16679	-9.8049E-05	-1.2154	-0.00071449	588.3457979322257	99.684	0.20558	97.359	97.212	97.417	-2.3253					5	3	2	0	0	0	0.026602	1	8889	8889		47.96	5.0953	1	8965.8	+		24531	24138	20066	20090	27330	27330					0.09586847091281925
KLLVINENL	9	Unmodified	_KLLVINENL_					0	0	0		tr|A0A7D7A2K8|A0A7D7A2K8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17485PE=4SV=1	tr|A0A7D7A2K8|A0A7D7A2K8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17485PE=4SV=1	tr|A0A7D7A2K8|A0A7D7A2K8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17485PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.8518676757812	2	528.326599	1054.63865	2.5012	0.0013214	-3.3966	-0.0017945	-0.89545	-0.00047309	528.3236639985172	107.88	0.96671	107.88	107.31	108.28	0					34	22	2	0	0	0	0.027448	1	12112	12112		44.117	0	1	583790			24532	36083	20067	20091	27331	27331					0.11351175545519254
KLLVINENL	9	Unmodified	_KLLVINENL_					0	0	0		tr|A0A7D7A2K8|A0A7D7A2K8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17485PE=4SV=1	tr|A0A7D7A2K8|A0A7D7A2K8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17485PE=4SV=1	tr|A0A7D7A2K8|A0A7D7A2K8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17485PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	528.326599	1054.63865	-0.3079	-0.00016267	-0.30274	-0.00015995	-0.61064	-0.00032262	528.3262232007161	107.94	0.78667	107.72	107.49	108.27	-0.22498	-0.035576	1.5381E-05	NaN	44.117	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54056			24533	36083	20067	20091							0.11351175545519254
KLLVINENL	9	Unmodified	_KLLVINENL_					0	0	0		tr|A0A7D7A2K8|A0A7D7A2K8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17485PE=4SV=1	tr|A0A7D7A2K8|A0A7D7A2K8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17485PE=4SV=1	tr|A0A7D7A2K8|A0A7D7A2K8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17485PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	528.326599	1054.63865	-0.40741	-0.00021524	-0.43115	-0.00022779	-0.83856	-0.00044303	528.3263255725706	108.94	0.88704	107.75	107.46	108.35	-1.1978	-0.0082998	-0.0001203	NaN	44.117	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48061			24534	36083	20067	20091							0.11351175545519254
KLLVINENL	9	Unmodified	_KLLVINENL_					0	0	0		tr|A0A7D7A2K8|A0A7D7A2K8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17485PE=4SV=1	tr|A0A7D7A2K8|A0A7D7A2K8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17485PE=4SV=1	tr|A0A7D7A2K8|A0A7D7A2K8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17485PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	528.326599	1054.63865	-0.75426	-0.00039849	0.10431	5.511E-05	-0.64995	-0.00034338	528.3262933851472	109.4	0.89091	107.67	107.47	108.37	-1.7256	-0.078749	0.00044549	NaN	44.117	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52297			24535	36083	20067	20091							0.11351175545519254
KLLVIPLPLSK	11	Unmodified	_KLLVIPLPLSK_					0	0	0			REV__tr|A0A553STH9|A0A553STH9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04890PE=4SV=1	REV__tr|A0A553STH9|A0A553STH9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04890PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.5865783691406	3	407.616203	1219.82678	0.4327	0.00017638	2.7848	0.0011351	3.2175	0.0013115	407.61615737026614	34.043	0.19245	34.043	33.921	34.113	0					5	3	2	0	0	0	0.026306	1	1612	1612		10.145	6.7358	1	12346	+		24536	30965	20068	20092	27332	27332					0.22566033469934155
KLLVLDLW	8	Unmodified	_KLLVLDLW_					0	0	0			REV__ENSG00000035687|ENST00000366535|ADSS2	REV__ENSG00000035687|ENST00000366535|ADSS2	MULTI-MSMS	OvCa99_classI_Rep5	1	500.3155822753906	2	500.315503	998.616454	1.9676	0.00098441	-3.7533	-0.0018778	-1.7857	-0.00089343	500.3134579831731	117.8	0.55542	117.8	117.56	118.11	0					29	11	3	0	0	0	0.64026	1	13492	13492		55.504	0	1	316650	+		24537	16603	20069	20093	27333	27333					0.11708995867752492
KLLVLQQE	8	Unmodified	_KLLVLQQE_					0	0	0		nc|ENSG00000118557|Q8TBY8-3|PMFBP1;ENSG00000118557|ENST00000237353|PMFBP1;nc|ENSG00000118557|Q8TBY8-1|PMFBP1	nc|ENSG00000118557|Q8TBY8-3|PMFBP1	nc|ENSG00000118557|Q8TBY8-3|PMFBP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.7921447753906	2	485.800217	969.585882	-0.75477	-0.00036667	0.34101	0.00016566	-0.41375	-0.000201	485.8002814206762	81.203	1.1661	78.493	78.199	79.365	-2.7106					44	23	3	0	0	0	0.028476	1	6760	6760		29.15	1.2673	1	229480			24538	3315	20070	20094	27334	27334					0.09987217482716915
KLLVLQQE	8	Unmodified	_KLLVLQQE_					0	0	0		nc|ENSG00000118557|Q8TBY8-3|PMFBP1;ENSG00000118557|ENST00000237353|PMFBP1;nc|ENSG00000118557|Q8TBY8-1|PMFBP1	nc|ENSG00000118557|Q8TBY8-3|PMFBP1	nc|ENSG00000118557|Q8TBY8-3|PMFBP1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	485.800217	969.585882	-0.60678	-0.00029477	0.28283	0.0001374	-0.32395	-0.00015738	485.80017283982147	80.637	1.1765	78.315	77.979	79.156	-2.3226	-0.08906	-3.7896E-05	NaN	35.618	60	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	259490			24539	3315	20070	20094							0.09987217482716915
KLLVRLID	8	Unmodified	_KLLVRLID_					0	0	0		tr|A0A7D6VP23|A0A7D6VP23_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14975PE=4SV=1	tr|A0A7D6VP23|A0A7D6VP23_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14975PE=4SV=1	tr|A0A7D6VP23|A0A7D6VP23_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14975PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.2652587890625	2	485.326402	968.638252	0.54602	0.000265	-0.60968	-0.00029589	-0.063661	-3.0896E-05	485.3259363560647	68.351	1.0812	64.861	64.622	65.704	-3.4902					50	21	3	0	0	0	0.028476	1	5159	5159		53.351	3.9099	1	157510			24540	34745	20071	20095	27335	27335					0.15267800616322802
KLLVVAKPQ	9	Unmodified	_KLLVVAKPQ_					0	0	0			REV__ENST00000489671.5_2_3:141820662-141868333:-|nuORF	REV__ENST00000489671.5_2_3:141820662-141868333:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.2555236816406	2	498.334227	994.653902	-0.94057	-0.00046872	1.3634	0.00067941	0.4228	0.00021069	498.33456783914465	70.177	0.24751	66.696	66.49	66.738	-3.4812					6	4	2	0	0	0	0.027462	1	5289	5289		11.511	0.64546	1	12186	+		24541	26644	20072	20096	27336	27336					0.15636087133373167
KLLVYIDP	8	Unmodified	_KLLVYIDP_					0	0	0			REV__ENSG00000133056|ENST00000684373|PIK3C2B	REV__ENSG00000133056|ENST00000684373|PIK3C2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.2513732910156	2	480.791861	959.569169	-0.025627	-1.2321E-05	-4.1862	-0.0020127	-4.2118	-0.002025	480.78992145604974	43.165	0.29837	43.165	43.014	43.312	0					10	6	2	0	0	0	0.028476	1	2828	2828		50.025	0	1	443720	+		24542	19122	20073	20097	27337	27337					0.08776716596742062
KLLWDQLKE	9	Unmodified	_KLLWDQLKE_					0	0	0			REV__tr|A0A553ST45|A0A553ST45_NIACIHelicaseOS=NialliacirculansOX=1397GN=CEQ21_04180PE=4SV=1	REV__tr|A0A553ST45|A0A553ST45_NIACIHelicaseOS=NialliacirculansOX=1397GN=CEQ21_04180PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	586.3364868164062	2	586.837331	1171.66011	-0.99144	-0.00058182	4.3658	0.002562	3.3743	0.0019802	586.8397671967903	40.191	1.2919	37.237	36.913	38.205	-2.9541					55	24	3	0	0	0	0.027185	1	1708	1708		71.877	9.7701	1	121260	+		24543	30916	20074	20098	27338	27338					0.08114560574222196
KLLWRVSLPE	10	Unmodified	_KLLWRVSLPE_					0	0	0		nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;ENST00000480467.5_1_9:123151516-123165527:-|nuORF;ENST00000484546.1_1_9:123151516-123165527:-|nuORF	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.2350158691406	3	414.251924	1239.73394	-0.457	-0.00018931	-1.3563	-0.00056185	-1.8133	-0.00075116	414.25096180961225	43.75	0.21581	43.75	43.608	43.823	0					7	4	2	0	0	0	0.026739	1	2902	2902		30.569	0	1	85497			24544	4524	20075	20099	27339	27339					0.12366528736538385
KLLYEKDIK	9	Unmodified	_KLLYEKDIK_					0	0	0			REV__ENST00000462639.1_1_X:23803617-23803970:+|nuORF	REV__ENST00000462639.1_1_X:23803617-23803970:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	575.35009765625	2	575.347532	1148.68051	-4.8722	-0.0028032	1.3843	0.00079645	-3.488	-0.0020068	575.3482857575835	154.87	1.1278	154.64	154.34	155.47	-0.22696					59	30	3	0	0	0	0.69895	1	15828	15828		18.324	0	1	84487	+		24545	18921	20076	20100	27340	27340					0.1121173123403878
KLLYKKIVTPE	11	Unmodified	_KLLYKKIVTPE_					0	0	0			REV__ENST00000547000.1_1_12:101462478-101462640:+|nuORF	REV__ENST00000547000.1_1_12:101462478-101462640:+|nuORF	MSMS	OvCa99_classI_Rep5	1	444.6163024902344	3	444.614751	1330.82242	NaN	NaN	NaN	NaN	NaN	NaN	NaN	89.195	1	89.195	88.695	89.695	0								0	0	0	0.19352	1	9516	9516		37.6	9.0232	1		+		24546	17192	20077	20101	27341	27341					0.1702452425638512
KLMAAHITM	9	Oxidation (M)	_KLM(Oxidation (M))AAHITM_		KLM(1)AAHITM		KLM(62)AAHITM(-62)	0	0	1		ENSG00000142303|ENST00000597188|ADAMTS10;nc|ENSG00000142303|Q9H324|ADAMTS10	ENSG00000142303|ENST00000597188|ADAMTS10	ENSG00000142303|ENST00000597188|ADAMTS10	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.27099609375	2	516.272455	1030.53036	-0.89294	-0.000461	-1.9675	-0.0010157	-2.8604	-0.0014767	516.2711421933835	82.279	1.3083	79.596	79.109	80.417	-2.683					92	26	5	0	0	0	0.29717	1	6783	6783		63.306	7.8021	2	796880			24547	4965	20078	20102	27342	27342		159			0.01631344699080728
KLMAISKP	8	Unmodified	_KLMAISKP_					0	0	0		nc|ENSG00000149054|Q9UL58-2|ZNF215;ENSG00000149054|ENST00000278319|ZNF215	nc|ENSG00000149054|Q9UL58-2|ZNF215	nc|ENSG00000149054|Q9UL58-2|ZNF215	MSMS	OvCa99_classI_Rep5	1	444.2733154296875	2	444.272781	886.531009	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.03	1	114.03	113.53	114.53	0								0	0	0	0.30129	1	13008	13008		65.803	4.8312	1				24548	5437	20079	20103	27343	27343					0.0832050741042849
KLMDHIYAV	9	Unmodified	_KLMDHIYAV_					0	0	0		nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83|COG5;nc|ENSG00000164597|Q9UP83-1|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	MULTI-MSMS	OvCa99_classI_Rep5	1	545.2942504882812	2	545.291702	1088.56885	1.5645	0.00085309	0.62711	0.00034196	2.1916	0.001195	545.2919366152496	80.787	1.285	80.787	80.529	81.814	0					68	30	4	0	0	0	0.030815	2	8285	8285;8320		134.81	68.381	1	11100000			24549	6469	20080	20104	27344;27345	27344					0.028109736052329026
KLMDHIYAV	9	Unmodified	_KLMDHIYAV_					0	0	0		nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83|COG5;nc|ENSG00000164597|Q9UP83-1|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	545.291702	1088.56885	0.18767	0.00010234	7.7167	0.0042079	7.9044	0.0043102	545.2960588158811	82.772	0.312	81.174	80.958	81.27	-1.5988	0.19307	0.0073297	NaN	134.81	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14772			24550	6469	20080	20104							0.028109736052329026
KLMEKRADFQ	10	Unmodified	_KLMEKRADFQ_					0	0	0		ENSG00000100852|ENST00000345122|ARHGAP5;nc|ENSG00000100852|Q13017-2|ARHGAP5	ENSG00000100852|ENST00000345122|ARHGAP5	ENSG00000100852|ENST00000345122|ARHGAP5	MULTI-SECPEP	OvCa99_classI_Rep5	1	422.5750732421875	3	422.56054	1264.65979	-0.54565	-0.00023057	1.2988	0.00054882	0.75315	0.00031825	422.8957104090954	37.345	0.14003	37.345	37.251	37.391	0					4	2	2	0	0	0	0.026975	1	2033	2033		25.126	11.618	1	6297.3			24551	2112	20081	20105	27346	27346					0.03804817582704345
KLMEQLAP	8	Unmodified	_KLMEQLAP_					0	0	0			REV__L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|96|3|sense	REV__L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|96|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.2810363769531	2	465.259871	928.505189	-0.70118	-0.00032623	-2.5377	-0.0011807	-3.2389	-0.0015069	465.25822490280893	50.414	0.34938	50.414	50.245	50.594	0					12	7	2	0	0	0	0.028476	1	3812	3812		47.916	0	1	159770	+		24552	28398	20082	20106	27347	27347					0.038076131681464176
KLMFIDYLK	9	Unmodified	_KLMFIDYLK_					0	0	0		ENST00000558522.5_1_15:79165359-79183469:+|nuORF	ENST00000558522.5_1_15:79165359-79183469:+|nuORF	ENST00000558522.5_1_15:79165359-79183469:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.8141479492188	2	585.833203	1169.65185	0.78094	0.0004575	2.1271	0.0012462	2.9081	0.0017037	585.8345837082143	131.73	0.5114	131.73	131.39	131.9	0					24	10	3	0	0	0	0.027459	1	15285	15285		62.107	26.489	1	151890			24553	13699	20083	20107	27348	27348					0.07381290333228208
KLMKKLLEA	9	Unmodified	_KLMKKLLEA_					0	0	0		ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	MULTI-MSMS	OvCa99_classI_Rep5	1	537.3433227539062	2	537.341195	1072.66784	-0.17764	-9.5451E-05	-0.13752	-7.3893E-05	-0.31515	-0.00016934	537.3409504854121	53.017	0.73447	53.017	52.784	53.519	0					31	16	3	0	0	0	0.1804	1	4188	4188		79.713	0	1	1727500			24554	2453	20084	20108	27349	27349					0.13440996570147945
KLMKKVDKEL	10	Unmodified	_KLMKKVDKEL_					0	0	0			REV__tr|A0A553SU57|A0A553SU57_NIACIGP-PDEdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06295PE=4SV=1	REV__tr|A0A553SU57|A0A553SU57_NIACIGP-PDEdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06295PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	617.330322265625	2	616.375766	1230.73698	-0.42034	-0.00025909	-1.2397	-0.00076413	-1.6601	-0.0010232	616.374880347049	53.944	0.51869	53.944	53.774	54.293	0					22	12	3	0	0	0	0.027088	1	4352	4352		26.693	13.881	1	491480	+		24555	31039	20085	20109	27350	27350					0.13084035799079174
KLMKQSSVR	9	Oxidation (M)	_KLM(Oxidation (M))KQSSVR_		KLM(1)KQSSVR		KLM(69)KQSSVR	0	0	1		nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;ENST00000559119.1_1_15:62146658-62148655:-|nuORF	nc|ENSG00000129003|Q709C8-3|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-MSMS	OvCa99_classI_Rep5	1	546.8131103515625	2	546.813333	1091.61211	-0.019478	-1.0651E-05	-4.0152	-0.0021956	-4.0347	-0.0022062	546.8111583295474	72.841	1.8324	72.841	72.492	74.324	0					164	46	6	0	0	0	0.24951	1	7090	7090		68.787	7.0955	1	48197000			24556	3916	20086	20110	27351	27351		119			0.06997163382516192
KLMLMSGKK	9	Unmodified	_KLMLMSGKK_					0	0	0		RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.T5031Rfs*29|1|0.06|ENSG00000173821|chr17:80389261-80389262|-/TCGG|frameshift_variant;RNF213|p.G5057Vfs*8|1|0.18|ENSG00000173821|chr17:80389340-80389340|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.N2986Tfs*32|1|0.9|ENSG00000173821|chr17:80347289-80347289|G/-|frameshift_variant;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.3060913085938	2	518.306298	1034.59804	0.64533	0.00033448	-0.046968	-2.4344E-05	0.59836	0.00031013	518.3058945664461	36.013	1.3462	33.164	32.839	34.186	-2.849					35	26	2	0	0	0	0.1804	1	1210	1210		79.713	11.228	1	95714			24557	7416;32788	20087	20111	27352	27352					0.08212794629889686
KLMLMSGKK	9	Unmodified	_KLMLMSGKK_					0	0	0		RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.T5031Rfs*29|1|0.06|ENSG00000173821|chr17:80389261-80389262|-/TCGG|frameshift_variant;RNF213|p.G5057Vfs*8|1|0.18|ENSG00000173821|chr17:80389340-80389340|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.N2986Tfs*32|1|0.9|ENSG00000173821|chr17:80347289-80347289|G/-|frameshift_variant;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	518.306298	1034.59804	-2.4293	-0.0012591	2.3023	0.0011933	-0.12694	-6.5794E-05	518.3074126430597	36.244	0.69123	33.534	33.35	34.041	-2.7097	0.18527	0.00089752	NaN	79.713	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19780			24558	7416;32788	20087	20111							0.08212794629889686
KLMLQSMEKL	10	Unmodified	_KLMLQSMEKL_					0	0	0			REV__nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	REV__nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	407.5798645019531	3	407.562893	1219.66685	1.0182	0.00041497	-4.0742	-0.0016605	-3.056	-0.0012455	407.5608296323491	58.6	0.90218	55.208	54.701	55.604	-3.392					24	17	2	0	0	0	0.026694	1	3884	3884		38.754	0	1	23463	+		24559	20808	20088	20112	27353	27353					0.06580414138943524
KLMLRLIKPKF	11	Unmodified	_KLMLRLIKPKF_					0	0	0		tr|A0A553SPH8|A0A553SPH8_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	tr|A0A553SPH8|A0A553SPH8_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	tr|A0A553SPH8|A0A553SPH8_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	462.93682861328125	3	462.972104	1385.89448	0.13246	6.1327E-05	3.002	0.0013899	3.1345	0.0014512	462.97361995160634	44.536	0.19891	41.827	41.653	41.851	-2.7097					6	3	2	0	0	0	0.026302	1	2541	2541		12.433	4.3985	1	11214			24560	34046	20089	20113	27354	27354					0.21697160129065196
KLMPNFSDS	9	Unmodified	_KLMPNFSDS_					0	0	0		nc|ENSG00000109320|P19838-3|NFKB1;NFKB1|p.R877Sfs*11|1|0.19|ENSG00000109320|chr4:102613466-102613466|A/-|frameshift_variant;nc|ENSG00000109320|P19838|NFKB1;ENSG00000109320|ENST00000226574|NFKB1	nc|ENSG00000109320|P19838-3|NFKB1	nc|ENSG00000109320|P19838-3|NFKB1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.3043212890625	2	519.749867	1037.48518	-0.75364	-0.00039171	0.86502	0.0004496	0.11138	5.7889E-05	519.7496247790104	91.543	1.477	89	88.04	89.517	-2.5425					51	16	4	0	0	0	0.027462	1	7946	7946		16.473	6.2079	1	49948			24561	2707	20090	20114	27355	27355					-0.03206182562462345
KLMQKEKYD	9	Unmodified	_KLMQKEKYD_					0	0	0			REV__ENSG00000183206|ENST00000358970|POTEC;REV__ENSG00000222038|ENST00000409602|POTEJ	REV__ENSG00000183206|ENST00000358970|POTEC	MULTI-SECPEP	OvCa99_classI_Rep5	1	590.8417358398438	2	591.812999	1181.61144	-0.043349	-2.5655E-05	3.5537	0.0021031	3.5103	0.0020774	592.3181352795834	67.551	0.35147	67.551	67.371	67.723	0					11	8	2	0	0	0	0.027462	1	6307	6307		39.253	0	1	209630	+		24562	21182;22699	20091	20115	27356	27356					0.027903239428269444
KLMTKETVD	9	Unmodified	_KLMTKETVD_					0	0	0		ENSG00000166349|ENST00000299440|RAG1;nc|ENSG00000166349|P15918-2|RAG1	ENSG00000166349|ENST00000299440|RAG1	ENSG00000166349|ENST00000299440|RAG1	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.8011474609375	2	532.78645	1063.55835	1.8798	0.0010015	-1.0409	-0.00055456	0.83895	0.00044698	532.7863190066124	93.033	0.50152	93.033	92.845	93.346	0					16	11	2	0	0	0	0.027453	1	10078	10078		45.972	20.398	1	900890			24563	6669	20092	20116	27357	27357					0.029109461601592557
KLMTSRLIN	9	Unmodified	_KLMTSRLIN_					0	0	0			REV__ENST00000309395.6_1_4:71848345-71848474:+|nuORF	REV__ENST00000309395.6_1_4:71848345-71848474:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.8074340820312	2	538.318251	1074.62195	-0.64263	-0.00034594	4.2858	0.0023071	3.6432	0.0019612	538.3204730358027	75.413	0.38825	72.182	72.012	72.4	-3.2308					9	7	2	0	0	0	0.027462	1	5919	5919		37.812	7.3079	1	26417	+		24564	24322	20093	20117	27358	27358					0.08762351387917988
KLMVHNWE	8	Unmodified	_KLMVHNWE_					0	0	0		ENSG00000047249|ENST00000359530|ATP6V1H;nc|ENSG00000047249|Q9UI12-2|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	ENSG00000047249|ENST00000359530|ATP6V1H	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.78466796875	2	528.768394	1055.52224	-0.10532	-5.5689E-05	0.77873	0.00041177	0.67341	0.00035608	529.2696979475171	56.94	0.21573	56.94	56.788	57.004	0					6	4	2	0	0	0	0.028476	1	4752	4752		51.335	5.3632	1	71066			24565	1140	20094	20118	27359	27359					-0.003304662260461555
KLNCHFTLA	9	Unmodified	_KLNCHFTLA_					0	0	0			REV__ENST00000372731.8_1_9:131395621-131395717:+|nuORF	REV__ENST00000372731.8_1_9:131395621-131395717:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.8031616210938	2	523.776219	1045.53789	-0.94676	-0.00049589	1.2597	0.00065982	0.31298	0.00016393	523.7767434749127	104.62	0.85857	104.62	104.36	105.22	0					29	19	2	0	0	0	0.027462	1	11731	11731		12.207	0	1	328370	+		24566	25012	20095	20119	27360	27360					0.01693820291029624
KLNCLLHKLGV	11	Unmodified	_KLNCLLHKLGV_					0	0	0			REV__nc|ENSG00000162711|Q96P20-2|NLRP3	REV__nc|ENSG00000162711|Q96P20-2|NLRP3	MULTI-MSMS	OvCa9_classI_Rep2	2	619.3713989257812	2	619.376101	1236.73765	-5.5105	-0.0034131	-1.3104	-0.00081161	-6.8208	-0.0042247	619.3751482919054	158.89	0.97121	158.66	158.38	159.35	-0.22696					37	18	3	0	0	0	0.72505	1	16138	16138		14.865	0	1	60403	+		24567	20767	20096	20120	27361	27361					0.12874875238730965
KLNDKDGFI	9	Unmodified	_KLNDKDGFI_					0	0	0			REV__tr|A0A7D6ZEX7|A0A7D6ZEX7_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12690PE=4SV=1	REV__tr|A0A7D6ZEX7|A0A7D6ZEX7_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12690PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	526.2859497070312	2	525.284931	1048.55531	0.26976	0.0001417	-0.89426	-0.00046974	-0.6245	-0.00032804	525.2844511785617	113.7	2.1235	113.58	113.02	115.14	-0.11777					119	42	4	0	0	0	0.28934	1	10771	10771		64.207	0	1	925990	+		24568	31953	20097	20121	27362	27362					0.03297439097673305
KLNEDQLVK	9	Unmodified	_KLNEDQLVK_					0	0	0			REV__tr|A0A553STK2|A0A553STK2_NIACIFour-carbonacidsugarkinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05065PE=3SV=1	REV__tr|A0A553STK2|A0A553STK2_NIACIFour-carbonacidsugarkinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05065PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	543.8114013671875	2	543.811313	1085.60807	-0.23552	-0.00012808	0.092995	5.0572E-05	-0.14253	-7.7508E-05	543.8112165245705	47.23	1.09	47.23	46.938	48.028	0					47	24	3	0	0	0	0.22035	1	3402	3402		72.879	0	1	2485900	+		24569	30976	20098	20122	27363	27363					0.06869397160471635
KLNEFIIEI	9	Unmodified	_KLNEFIIEI_					0	0	0		tr|A0A7D6VM92|A0A7D6VM92_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12730PE=4SV=1	tr|A0A7D6VM92|A0A7D6VM92_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12730PE=4SV=1	tr|A0A7D6VM92|A0A7D6VM92_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12730PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.82666015625	2	559.826432	1117.63831	0.18602	0.00010414	-0.47958	-0.00026848	-0.29357	-0.00016435	559.8259972872236	117.78	1.4204	116.44	116.16	117.58	-1.3444					54	26	3	0	0	0	0.2422	1	11028	11028		69.628	7.5202	1	124280			24570	34651	20099	20123	27364	27364					0.08419755825661923
KLNEMSYEL	9	Unmodified	_KLNEMSYEL_					0	0	0		nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP;PDE4DIP|p.R419Vfs*21|1|0.19|ENSG00000178104|chr1:148965542-148965542|T/-|frameshift_variant	nc|ENSG00000178104|Q5VU43-3|PDE4DIP;PDE4DIP|p.R419Vfs*21|1|0.19|ENSG00000178104|chr1:148965542-148965542|T/-|frameshift_variant	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-MSMS	OvCa99_classI_Rep5	1	563.7770385742188	2	563.776082	1125.53761	2.9543	0.0016656	0.17887	0.00010084	3.1331	0.0017664	563.7760153263173	86.309	0.76859	86.309	86.033	86.801	0					46	18	4	0	0	0	0.17606	1	9084	9084		80.455	16.247	1	3712500			24571	7732;15485	20100	20124	27365	27365					-0.02013644219505295
KLNERNEFN	9	Unmodified	_KLNERNEFN_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.3463134765625	2	582.293819	1162.57309	2.3302	0.0013569	3.0025	0.0017483	5.3327	0.0031052	582.2945677706008	100.75	0.20318	100.75	100.61	100.81	0					6	4	2	0	0	0	0.027462	1	11182	11182		40.778	15.204	1	196120	+		24572	22537	20101	20125	27366	27366					-0.0016984564749691344
KLNGSETLNK	10	Unmodified	_KLNGSETLNK_					0	0	0			REV__ENSG00000269964|ENST00000684080|MEI4	REV__ENSG00000269964|ENST00000684080|MEI4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.2853393554688	2	552.306395	1102.59824	0.79674	0.00044004	3.5365	0.0019533	4.3333	0.0023933	552.3083249680732	110.54	0.63125	108.94	108.65	109.28	-1.6011					21	11	2	0	0	0	0.027788	1	10156	10156		85.862	0	1	46257	+		24573	23603	20102	20126	27367	27367					0.05104209155092576
KLNIKPGR	8	Unmodified	_KLNIKPGR_					0	0	0			REV__ENST00000491031.5_1_2:25016788-25038721:+|nuORF	REV__ENST00000491031.5_1_2:25016788-25038721:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	463.3006896972656	2	463.300719	924.586885	-0.93558	-0.00043346	0.54811	0.00025394	-0.38747	-0.00017952	463.30080076163057	36.909	0.54456	36.909	36.707	37.251	0					24	11	4	0	0	0	0.73288	1	1987	1987		35.201	0	1	337640	+		24574	26667	20103	20127	27368	27368					0.12157476642278198
KLNIKRLAK	9	Unmodified	_KLNIKRLAK_					0	0	0			REV__tr|A0A7D6W3I1|A0A7D6W3I1_9CLOTTerminaselargesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_10165PE=4SV=1	REV__tr|A0A7D6W3I1|A0A7D6W3I1_9CLOTTerminaselargesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_10165PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.3712768554688	2	542.371675	1082.7288	-1.4996	-0.00081332	0.88982	0.00048261	-0.60975	-0.00033071	542.3720392957932	41.042	2.065	38.088	37.789	39.854	-2.9541					109	39	4	0	0	0	0.55588	1	1811	1811		37.159	0	1	370520	+		24575	31916	20104	20128	27369	27369					0.19074269664611165
KLNILGKNPL	10	Unmodified	_KLNILGKNPL_					0	0	0		ENST00000471702.2_2_3:132406014-132407530:-|nuORF	ENST00000471702.2_2_3:132406014-132407530:-|nuORF	ENST00000471702.2_2_3:132406014-132407530:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	556.3043212890625	2	555.355691	1108.69683	0.40383	0.00022427	-1.373	-0.00076248	-0.96913	-0.00053821	555.3546485704907	76.244	1.767	73.305	72.018	73.785	-2.9389					56	36	2	0	0	0	0.026734	1	6014	6014		47.657	9.8458	1	17788			24576	12386	20105	20129	27370	27370					0.14682857190791765
KLNINKIII	9	Unmodified	_KLNINKIII_					0	0	0			REV__tr|A0A7D6W0L6|A0A7D6W0L6_9CLOTDUF1887familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00270PE=4SV=1	REV__tr|A0A7D6W0L6|A0A7D6W0L6_9CLOTDUF1887familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00270PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.7783813476562	2	534.860609	1067.70667	0.56713	0.00030334	1.3431	0.00071835	1.9102	0.0010217	534.861162461684	81.308	0.29246	81.308	81.162	81.455	0					13	6	3	0	0	0	0.027448	1	8377	8377		44.117	0	1	242060	+		24577	31859	20106	20130	27371	27371					0.17552045196180188
KLNIRPLL	8	Unmodified	_KLNIRPLL_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000590367.5_1_17:42931463-42950195:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MULTI-MSMS	OvCa9_classI_Rep2	2	483.8257141113281	2	483.826569	965.638586	-0.60225	-0.00029139	0.18575	8.987E-05	-0.41651	-0.00020152	483.82654204477944	76.923	1.8627	75.133	74.894	76.757	-1.7894					84	35	4	0	0	0	0.52992	1	6403	6403		74.517	3.1387	1	705570			24578	2685	20107	20131	27372	27372					0.1543922033616809
KLNKPLTL	8	Unmodified	_KLNKPLTL_					0	0	0		tr|A0A553SK65|A0A553SK65_NIACIPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18310PE=4SV=1	tr|A0A553SK65|A0A553SK65_NIACIPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18310PE=4SV=1	tr|A0A553SK65|A0A553SK65_NIACIPrepilin-typeN-terminalcleavage/methylationdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18310PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.79376220703125	2	463.805303	925.596052	-1.019	-0.00047264	-0.6507	-0.0003018	-1.6697	-0.00077443	463.8048508380705	55.733	0.81056	52.438	52.059	52.87	-3.2944					25	15	2	0	0	0	0.028476	1	3518	3518		31.955	0	1	67964			24579	33584	20108	20132	27373	27373					0.1302782520792789
KLNKVVISKDM	11	Oxidation (M)	_KLNKVVISKDM(Oxidation (M))_		KLNKVVISKDM(1)		KLNKVVISKDM(46)	0	0	1			REV__tr|A0A553SLS1|A0A553SLS1_NIACIalpha-L-rhamnosidaseOS=NialliacirculansOX=1397GN=CEQ21_21055PE=4SV=1	REV__tr|A0A553SLS1|A0A553SLS1_NIACIalpha-L-rhamnosidaseOS=NialliacirculansOX=1397GN=CEQ21_21055PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	645.8697509765625	2	645.87613	1289.73771	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.81	1	134.81	134.31	135.31	0								0	0	0	0.18925	1	15697	15697		46.457	8.6453	1		+		24580	30260	20109	20133	27374	27374		664			0.10442830448073437
KLNLRKIDIV	10	Unmodified	_KLNLRKIDIV_					0	0	0		tr|A0A7D6ZWF9|A0A7D6ZWF9_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07780PE=4SV=1	tr|A0A7D6ZWF9|A0A7D6ZWF9_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07780PE=4SV=1	tr|A0A7D6ZWF9|A0A7D6ZWF9_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07780PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	404.5984802246094	3	404.599324	1210.77614	1.1163	0.00045166	-3.2761	-0.0013255	-2.1598	-0.00087385	404.59793954601446	30.156	0.8457	30.156	29.935	30.781	0					39	16	4	0	0	0	0.7855	1	1140	1140		20.837	3.004	1	305940			24581	35841	20110	20134	27375	27375					0.17918504144927283
KLNNAKYAI	9	Unmodified	_KLNNAKYAI_					0	0	0		nc|ENSG00000136167|P13796-2|LCP1;LCP1|p.M589Tfs*18|1|0.03|ENSG00000136167|chr13:46127709-46127710|-/G|frameshift_variant;ENSG00000136167|ENST00000323076|LCP1;ENSG00000120756|ENST00000457734|PLS1	nc|ENSG00000136167|P13796-2|LCP1	nc|ENSG00000136167|P13796-2|LCP1	MULTI-MSMS	OvCa99_classI_Rep5	1	517.8041381835938	2	517.803291	1033.59203	-0.7131	-0.00036925	-0.029002	-1.5017E-05	-0.74211	-0.00038426	517.8031764368596	47.915	0.86287	47.915	47.638	48.501	0					64	19	5	0	0	0	0.055688	1	3468	3468		115.46	12.686	1	8321500			24582	3451	20111	20135	27376	27376					0.07657735714224145
KLNNEEHN	8	Unmodified	_KLNNEEHN_					0	0	0		RIPK1|p.P257Lfs*26|1|0.04|ENSG00000137275|chr6:3085339-3085340|-/T|frameshift_variant;nc|ENSG00000137275|Q13546-2|RIPK1;ENSG00000137275|ENST00000259808|RIPK1	RIPK1|p.P257Lfs*26|1|0.04|ENSG00000137275|chr6:3085339-3085340|-/T|frameshift_variant	RIPK1|p.P257Lfs*26|1|0.04|ENSG00000137275|chr6:3085339-3085340|-/T|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.7772521972656	2	499.238513	996.462472	-0.24145	-0.00012054	0.027809	1.3883E-05	-0.21364	-0.00010666	499.2384397430299	30.309	0.39581	30.309	30.136	30.532	0					17	7	3	0	0	0	0.028476	1	1147	1147		30.504	4.9296	1	104350			24583	4574	20112	20136	27377	27377					-0.03590065635728479
KLNNLTFLY	9	Unmodified	_KLNNLTFLY_					0	0	0		ENSG00000106809|ENST00000375561|OGN	ENSG00000106809|ENST00000375561|OGN	ENSG00000106809|ENST00000375561|OGN	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.31787109375	2	563.318774	1124.623	1.8054	0.001017	-1.7512	-0.0009865	0.054221	3.0544E-05	563.3176953137544	113.48	1.6563	112.04	111.7	113.36	-1.4461					69	32	4	0	0	0	0.35444	1	10499	10499		56.721	8.8055	1	371260			24584	2575	20113	20137	27378	27378					0.06566889028476908
KLNNLTFLY	9	Unmodified	_KLNNLTFLY_					0	0	0		ENSG00000106809|ENST00000375561|OGN	ENSG00000106809|ENST00000375561|OGN	ENSG00000106809|ENST00000375561|OGN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	563.318774	1124.623	0.81575	0.00045953	-0.73491	-0.00041399	0.080842	4.554E-05	563.3181837906072	112.02	1.5779	111.88	111.62	113.2	-0.13961	-0.088256	4.36E-05	NaN	56.721	67	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	287700			24585	2575	20113	20137							0.06566889028476908
KLNNLTFLY	9	Unmodified	_KLNNLTFLY_					0	0	0		ENSG00000106809|ENST00000375561|OGN	ENSG00000106809|ENST00000375561|OGN	ENSG00000106809|ENST00000375561|OGN	MULTI-MATCH	OvCa9_classI_Rep3	3		2	563.318774	1124.623	0.88588	0.00049903	0.25809	0.00014539	1.144	0.00064442	563.3186827906786	113.07	2.0179	112	111.71	113.73	-1.0753	0.025688	0.0011624	NaN	56.721	62	39	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263010			24586	2575	20113	20137							0.06566889028476908
KLNNRQLNY	9	Unmodified	_KLNNRQLNY_					0	0	0		nc|ENSG00000151239|Q12792-4|TWF1;ENSG00000151239|ENST00000395510|TWF1;nc|ENSG00000151239|Q12792-3|TWF1	nc|ENSG00000151239|Q12792-4|TWF1	nc|ENSG00000151239|Q12792-4|TWF1	MULTI-MSMS	OvCa9_classI_Rep2	2	581.81884765625	2	581.820004	1161.62546	-1.0989	-0.00063935	0.63999	0.00037236	-0.45889	-0.00026699	581.8202663764829	48.77	1.338	46.01	45.679	47.017	-2.7603					67	26	4	0	0	0	0.31747	2	3058	3053;3058		60.972	8.0352	1	330180			24587	5544	20114	20138	27379;27380	27380					0.051107374861203425
KLNNRQLNY	9	Unmodified	_KLNNRQLNY_					0	0	0		nc|ENSG00000151239|Q12792-4|TWF1;ENSG00000151239|ENST00000395510|TWF1;nc|ENSG00000151239|Q12792-3|TWF1	nc|ENSG00000151239|Q12792-4|TWF1	nc|ENSG00000151239|Q12792-4|TWF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	581.8207397460938	2	581.820004	1161.62546	-2.6105	-0.0015189	1.9089	0.0011106	-0.70163	-0.00040822	581.8211320180073	49.18	2.183	46.039	45.417	47.6	-3.1416					102	41	4	0	0	0	0.027416	4	2761	2750;2761;2776;2789		138.24	64.268	1	1115700			24588	5544	20114	20138	27381;27382;27383;27384	27382					0.051107374861203425
KLNPQQFEV	9	Unmodified	_KLNPQQFEV_					0	0	0		ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000531001.1_1_11:125478078-125479612:+|nuORF;ENST00000525431.1_1_11:125476222-125478225:+|nuORF	ENST00000534472.5_1_11:125465789-125479519:+|nuORF	ENST00000534472.5_1_11:125465789-125479519:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	551.7987670898438	2	551.798206	1101.58186	1.8107	0.00099915	0.8181	0.00045142	2.6288	0.0014506	551.7984723093416	83.887	0.79858	83.887	83.463	84.261	0					45	18	4	0	0	0	0.1804	2	8730	8730;8759		79.713	7.5202	1	3070500			24589	4347	20115	20139	27385;27386	27385					0.035131279889810685
KLNPQQFEV	9	Unmodified	_KLNPQQFEV_					0	0	0		ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000531001.1_1_11:125478078-125479612:+|nuORF;ENST00000525431.1_1_11:125476222-125478225:+|nuORF	ENST00000534472.5_1_11:125465789-125479519:+|nuORF	ENST00000534472.5_1_11:125465789-125479519:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	551.798206	1101.58186	-0.9856	-0.00054385	0.20533	0.0001133	-0.78027	-0.00043055	551.7981290540043	85.145	1.0367	83.599	83.153	84.19	-1.5462	-0.19921	-0.00025494	NaN	79.713	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49538			24590	4347	20115	20139							0.035131279889810685
KLNPQQFEV	9	Unmodified	_KLNPQQFEV_					0	0	0		ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000531001.1_1_11:125478078-125479612:+|nuORF;ENST00000525431.1_1_11:125476222-125478225:+|nuORF	ENST00000534472.5_1_11:125465789-125479519:+|nuORF	ENST00000534472.5_1_11:125465789-125479519:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	551.798206	1101.58186	-1.5525	-0.00085666	2.0542	0.0011335	0.50175	0.00027686	551.7989437482001	86.083	0.90118	83.863	83.536	84.437	-2.2204	0.064621	0.0017855	NaN	79.713	41	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81733			24591	4347	20115	20139							0.035131279889810685
KLNPQQFEV	9	Unmodified	_KLNPQQFEV_					0	0	0		ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A;ENST00000531001.1_1_11:125478078-125479612:+|nuORF;ENST00000525431.1_1_11:125476222-125478225:+|nuORF	ENST00000534472.5_1_11:125465789-125479519:+|nuORF	ENST00000534472.5_1_11:125465789-125479519:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	551.798206	1101.58186	1.2222	0.00067439	-3.51	-0.0019368	-2.2878	-0.0012624	551.7962013389096	86.47	0.68724	83.843	83.613	84.3	-2.6269	0.045388	-0.0043551	NaN	79.713	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74672			24592	4347	20115	20139							0.035131279889810685
KLNPSMLR	8	Unmodified	_KLNPSMLR_					0	0	0		nc|ENSG00000138741|Q13507-3|TRPC3;ENSG00000138741|ENST00000379645|TRPC3	nc|ENSG00000138741|Q13507-3|TRPC3	nc|ENSG00000138741|Q13507-3|TRPC3	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.75604248046875	2	479.778762	957.542971	1.5152	0.00072698	-2.522	-0.00121	-1.0067	-0.00048301	479.77720968711196	74.816	1.0728	74.816	74.095	75.168	0					61	26	4	0	0	0	0.028476	1	7411	7411		47.916	10.104	1	1505900			24593	4719	20116	20140	27387	27387					0.06250124153621073
KLNPSMLR	8	Unmodified	_KLNPSMLR_					0	0	0		nc|ENSG00000138741|Q13507-3|TRPC3;ENSG00000138741|ENST00000379645|TRPC3	nc|ENSG00000138741|Q13507-3|TRPC3	nc|ENSG00000138741|Q13507-3|TRPC3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	479.778762	957.542971	-0.5953	-0.00028561	0.59562	0.00028577	0.00031973	1.534E-07	479.7802332891919	77.426	0.20927	75.073	74.89	75.1	-2.3527	0.12845	0.0028142	NaN	47.916	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4805			24594	4719	20116	20140							0.06250124153621073
KLNSHETTI	9	Unmodified	_KLNSHETTI_					0	0	0		nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP;PDE4DIP|p.R419Vfs*21|1|0.19|ENSG00000178104|chr1:148965542-148965542|T/-|frameshift_variant	nc|ENSG00000178104|Q5VU43-3|PDE4DIP;PDE4DIP|p.R419Vfs*21|1|0.19|ENSG00000178104|chr1:148965542-148965542|T/-|frameshift_variant	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-MSMS	OvCa99_classI_Rep5	1	521.780517578125	2	521.780013	1041.54547	-1.3996	-0.0007303	1.1364	0.00059292	-0.26328	-0.00013737	521.7805254820265	37.074	0.78255	37.074	36.885	37.668	0					33	16	3	0	0	0	0.1243	1	2009	2009		90.601	10.888	1	713380			24595	7732;15485	20117	20141	27388	27388					0.026362510922808724
KLNSHETTI	9	Unmodified	_KLNSHETTI_					0	0	0		nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;nc|ENSG00000178104|Q5VU43-13|PDE4DIP;nc|ENSG00000178104|Q5VU43-2|PDE4DIP;PDE4DIP|p.R419Vfs*21|1|0.19|ENSG00000178104|chr1:148965542-148965542|T/-|frameshift_variant	nc|ENSG00000178104|Q5VU43-3|PDE4DIP;PDE4DIP|p.R419Vfs*21|1|0.19|ENSG00000178104|chr1:148965542-148965542|T/-|frameshift_variant	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.780013	1041.54547	-0.35164	-0.00018348	-0.97644	-0.00050949	-1.3281	-0.00069297	521.7796324732602	39.549	0.54383	36.839	36.558	37.102	-2.7097	-0.11725	-0.0020091	NaN	90.601	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11480			24596	7732;15485	20117	20141							0.026362510922808724
KLNSVRQQQL	10	Unmodified	_KLNSVRQQQL_					0	0	0		ENSG00000214338|ENST00000525778|SOGA3	ENSG00000214338|ENST00000525778|SOGA3	ENSG00000214338|ENST00000525778|SOGA3	MULTI-MSMS	OvCa9_classI_Rep2	2	405.2388000488281	3	405.238566	1212.69387	1.178	0.00047739	-1.1193	-0.00045358	0.058751	2.3808E-05	405.2380980368008	45.582	1.7446	42.872	42.448	44.192	-2.7097					104	34	5	0	0	0	0.49595	4	2686	2680;2686;2692;2712		54.722	8.1094	1	1021000			24597	9171	20118	20142	27389;27390;27391;27392	27390					0.09602982065985088
KLNSVRQQQL	10	Unmodified	_KLNSVRQQQL_					0	0	0		ENSG00000214338|ENST00000525778|SOGA3	ENSG00000214338|ENST00000525778|SOGA3	ENSG00000214338|ENST00000525778|SOGA3	MULTI-MSMS	OvCa9_classI_Rep4_	4	405.23876953125	3	405.238566	1212.69387	0.69282	0.00028076	-1.0074	-0.00040826	-0.31463	-0.0001275	405.23816410818705	45.869	1.9179	42.797	42.405	44.323	-3.0717					124	36	5	0	0	0	0.49595	2	2402	2402;2414		54.722	4.8972	1	2187400			24598	9171	20118	20142	27393;27394	27393					0.09602982065985088
KLNVFIIDT	9	Unmodified	_KLNVFIIDT_					0	0	0		ENST00000505045.1_1_5:26903562-26988455:-|nuORF	ENST00000505045.1_1_5:26903562-26988455:-|nuORF	ENST00000505045.1_1_5:26903562-26988455:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.7876586914062	2	531.813325	1061.6121	-0.6614	-0.00035174	-1.8816	-0.0010007	-2.5431	-0.0013524	531.8120619988924	43.471	0.33807	43.471	43.27	43.608	0					17	7	3	0	0	0	0.027462	1	2870	2870		29.15	3.6994	1	215010			24599	12885	20119	20143	27395	27395					0.08375486654176711
KLNVIRRNKHS	11	Unmodified	_KLNVIRRNKHS_					0	0	0		ENSG00000115604|ENST00000233957|IL18R1	ENSG00000115604|ENST00000233957|IL18R1	ENSG00000115604|ENST00000233957|IL18R1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.25848388671875	3	455.612626	1363.81605	-0.8652	-0.0003942	2.8913	0.0013173	2.0261	0.0009231	455.61397404679116	50.698	0.35892	47.525	47.412	47.771	-3.1734					8	6	2	0	0	0	0.026145	1	2920	2920		17.833	0	1	10058			24600	3112	20120	20144	27396	27396					0.14869443868201415
KLPALFFL	8	Unmodified	_KLPALFFL_					0	0	0		ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	OvCa99_classI_Rep5	1	474.80072021484375	2	474.799489	947.584425	1.4188	0.00067364	0.88957	0.00042237	2.3084	0.001096	474.7997177553149	146.54	0.98035	146.54	146.23	147.21	0					43	19	3	0	0	0	0.59103	2	17126	17126;17149		65.897	0	1	352730			24601	4602	20121	20145	27397;27398	27397					0.10853628184611352
KLPDLLRAI	9	Unmodified	_KLPDLLRAI_					0	0	0			REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|14|1|sense	REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|14|1|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.32568359375	2	519.837134	1037.65972	0.87881	0.00045684	-1.6562	-0.00086093	-0.77735	-0.00040409	519.8361628840264	112.46	1.1342	112.34	111.98	113.12	-0.12174					67	22	5	0	0	0	0.027425	1	10708	10708		60.118	16.001	1	202000	+		24602	28257	20122	20146	27399	27399					0.1423918564505584
KLPDRYFLPR	10	Unmodified	_KLPDRYFLPR_					0	0	0			REV__nc|ENSG00000091128|A4D0S4-3|LAMB4	REV__nc|ENSG00000091128|A4D0S4-3|LAMB4	MULTI-SECPEP	OvCa9_classI_Rep2	2	436.2610168457031	3	435.587307	1303.74009	0.33896	0.00014765	-2.6133	-0.0011383	-2.2744	-0.00099068	435.5857390159266	64.597	1.2064	61.872	61.234	62.44	-2.7246					35	21	2	0	0	0	0.026881	1	4912	4912		30.569	5.5011	1	55752	+		24603	17241	20123	20147	27400	27400					0.10037046968068353
KLPEYNRDI	9	Unmodified	_KLPEYNRDI_					0	0	0			REV__ENSG00000151491|ENST00000281172|EPS8	REV__ENSG00000151491|ENST00000281172|EPS8	MULTI-MSMS	OvCa99_classI_Rep5	1	574.3101196289062	2	574.308938	1146.60332	0.57524	0.00033037	3.9134	0.0022475	4.4887	0.0025779	574.310990496056	158.89	0.68019	158.89	158.51	159.19	0					26	13	3	0	0	0	0.48047	1	18629	18629		44.377	3.599	1	226480	+		24604	20237	20124	20148	27401	27401					0.03588513017712103
KLPFSFRTYGL	11	Unmodified	_KLPFSFRTYGL_					0	0	0		tr|A0A553SMI0|A0A553SMI0_NIACIAbrBfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22490PE=4SV=1	tr|A0A553SMI0|A0A553SMI0_NIACIAbrBfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22490PE=4SV=1	tr|A0A553SMI0|A0A553SMI0_NIACIAbrBfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22490PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	444.2519226074219	3	443.583562	1327.72886	-0.14322	-6.3529E-05	1.5087	0.00066924	1.3655	0.00060572	443.5835899701274	47.318	0.30868	44.245	44.014	44.322	-3.0724					9	5	2	0	0	0	0.025864	1	2528	2528		35.178	6.6015	1	6600			24605	33836	20125	20149	27402	27402					0.07810224873946936
KLPHSVTTL	9	Unmodified	_KLPHSVTTL_					0	0	0			REV__HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|132|2|anti-sense	REV__HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|132|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.2704772949219	2	498.297842	994.581131	1.6318	0.00081313	0.52386	0.00026104	2.1557	0.0010742	498.29806170288003	101.22	0.62656	101.22	100.94	101.57	0					27	14	2	0	0	0	0.027455	1	11232	11232		51.335	17.82	1	469420	+		24606	28289	20126	20150	27403	27403					0.08362333339937322
KLPIRRLYNL	10	Unmodified	_KLPIRRLYNL_					0	0	0		chr3:108051970-108053592|110|15.82|0.17|6.58|-|0|CD47,None|1	chr3:108051970-108053592|110|15.82|0.17|6.58|-|0|CD47,None|1	chr3:108051970-108053592|110|15.82|0.17|6.58|-|0|CD47,None|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	429.25018310546875	3	429.274952	1284.80303	1.0587	0.00045448	-2.3458	-0.001007	-1.287	-0.0005525	429.27499302099255	90.918	0.51508	89.682	89.439	89.954	-1.2355					12	9	3	0	0	0	0.027001	1	8061	8061		16.007	0	1	8511.7			24607	466	20127	20151	27404	27404					0.17201612756139184
KLPITQRL	8	Unmodified	_KLPITQRL_					0	0	0		nc|ENSG00000176438|Q6ZMZ3-3|SYNE3;SYNE3|p.T871Ifs*3|1|0.04|ENSG00000176438|chr14:95433335-95433336|GG/-|frameshift_variant;nc|ENSG00000176438|Q6ZMZ3-2|SYNE3;ENSG00000176438|ENST00000682763|SYNE3;ENST00000555759.1_1_14:95918480-95934190:-|nuORF;SYNE3|p.S490Ffs*56|1|0.23|ENSG00000176438|chr14:95446074-95446075|-/TGACCATTCTGCTTCAGTGTCCTCGTGTGTAAAA|frameshift_variant;SYNE3|p.K267Rfs*72|1|0.06|ENSG00000176438|chr14:95455714-95455715|-/C|frameshift_variant	nc|ENSG00000176438|Q6ZMZ3-3|SYNE3	nc|ENSG00000176438|Q6ZMZ3-3|SYNE3	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.8170471191406	2	484.816202	967.617851	0.030261	1.4671E-05	-0.35128	-0.00017031	-0.32102	-0.00015563	484.8159441887316	56.421	1.7765	53.127	52.718	54.495	-3.2944					89	34	4	0	0	0	0.38598	1	3609	3609		90.777	16.802	1	841740			24608	7609	20128	20152	27405	27405					0.13274629956515582
KLPIYTLAQ	9	Unmodified	_KLPIYTLAQ_					0	0	0		nc|ENSG00000165272|Q92482-2|AQP3;ENSG00000165272|ENST00000297991|AQP3;ENST00000463983.5_1_9:33443205-33447528:-|nuORF	nc|ENSG00000165272|Q92482-2|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	MSMS	OvCa9_classI_Rep3	3	523.815673828125	2	523.815867	1045.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.36	1	122.32	121.82	122.82	-1.0377								0	0	0	0.17442	1	9517	9517		42.396	5.237	1				24609	6543	20129	20153	27406	27406					0.09619790516785542
KLPKIFHVN	9	Unmodified	_KLPKIFHVN_					0	0	0		nc|ENSG00000124253|P35558-2|PCK1;ENSG00000124253|ENST00000319441|PCK1	nc|ENSG00000124253|P35558-2|PCK1	nc|ENSG00000124253|P35558-2|PCK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.2861938476562	2	548.337301	1094.66005	1.9839	0.0010878	0.031821	1.7449E-05	2.0157	0.0011053	548.3367252423606	100.4	0.29185	100.4	100.24	100.53	0					10	6	2	0	0	0	0.027462	1	11124	11124		23.042	0	1	97251			24610	3641	20130	20154	27407	27407					0.11650605364911826
KLPKKRSV	8	Unmodified	_KLPKKRSV_					0	0	0		nc|ENSG00000144596|Q9C0E4-2|GRIP2;ENSG00000144596|ENST00000621039|GRIP2	nc|ENSG00000144596|Q9C0E4-2|GRIP2	nc|ENSG00000144596|Q9C0E4-2|GRIP2	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.3059997558594	2	478.324194	954.633835	-0.17551	-8.3952E-05	1.026	0.00049077	0.85051	0.00040682	478.32487660846726	40.469	0.19725	37.759	37.65	37.848	-2.7097					5	3	2	0	0	0	0.028476	1	2055	2055		29.15	0	1	4777.1			24611	5164	20131	20155	27408	27408					0.15470336193413914
KLPLKKTAL	9	Unmodified	_KLPLKKTAL_					0	0	0		tr|A0A7D6ZVX7|A0A7D6ZVX7_9CLOT2-oxoacid:acceptoroxidoreductasesubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_15590PE=4SV=1	tr|A0A7D6ZVX7|A0A7D6ZVX7_9CLOT2-oxoacid:acceptoroxidoreductasesubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_15590PE=4SV=1	tr|A0A7D6ZVX7|A0A7D6ZVX7_9CLOT2-oxoacid:acceptoroxidoreductasesubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_15590PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.8046569824219	2	506.349877	1010.6852	-0.50428	-0.00025534	0.095231	4.822E-05	-0.40905	-0.00020712	506.3497565829155	102.78	0.52518	100.58	100.36	100.88	-2.1994					14	9	2	0	0	0	0.027462	1	9257	9257		29.15	9.1528	1	13141			24612	35819	20132	20156	27409	27409					0.18028660167453836
KLPLNVTFRQ	10	Unmodified	_KLPLNVTFRQ_					0	0	0		sp|Q6SW94|VGLI_HCMVMUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL37PE=3SV=1	sp|Q6SW94|VGLI_HCMVMUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL37PE=3SV=1	sp|Q6SW94|VGLI_HCMVMUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL37PE=3SV=1	MSMS	OvCa99_classI_Rep5	1	405.91058349609375	3	405.91179	1214.71354	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.68	1	21.68	21.18	22.18	0								0	0	0	0.14088	1	139	139		22.58	5.1116	1				24613	32911	20133	20157	27410	27410					0.11477358076763267
KLPLPAERVTL	11	Unmodified	_KLPLPAERVTL_					0	0	0		nc|ENSG00000161202|Q92997-2|DVL3;ENSG00000161202|ENST00000313143|DVL3;ENST00000462665.5_1_3:183873423-183882592:+|nuORF	nc|ENSG00000161202|Q92997-2|DVL3	nc|ENSG00000161202|Q92997-2|DVL3	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.2073974609375	3	412.927329	1235.76016	1.3925	0.00057501	-0.5646	-0.00023314	0.82794	0.00034188	412.9271482474017	45.564	1.926	45.564	44.75	46.676	0					97	43	4	0	0	0	0.025772	1	3199	3199		11.455	0	1	3464900			24614	6122	20134	20158	27411	27411					0.15170797908035638
KLPMALGLWPL	11	Unmodified	_KLPMALGLWPL_					0	0	0		ENST00000598095.5_1_19:49842746-49843241:+|nuORF	ENST00000598095.5_1_19:49842746-49843241:+|nuORF	ENST00000598095.5_1_19:49842746-49843241:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8693237304688	2	619.87012	1237.72569	-3.8587	-0.0023919	2.7872	0.0017277	-1.0715	-0.00066418	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.72459	1	15339	15339		20.947	0.95016	1	492670			24615	14195	20135	20159	27412	27412					0.11633258495567134
KLPMALGLWPL	11	Unmodified	_KLPMALGLWPL_					0	0	0		ENST00000598095.5_1_19:49842746-49843241:+|nuORF	ENST00000598095.5_1_19:49842746-49843241:+|nuORF	ENST00000598095.5_1_19:49842746-49843241:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.86865234375	2	619.87012	1237.72569	-3.1194	-0.0019336	1.8959	0.0011752	-1.2235	-0.00075843	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.70865	1	15209	15209		26.693	2.1737	1	806750			24616	14195	20135	20159	27413	27413					0.11633258495567134
KLPPACLE	8	Unmodified	_KLPPACLE_					0	0	0			REV__ENST00000457681.1_1_9:115246828-115249324:-|nuORF	REV__ENST00000457681.1_1_9:115246828-115249324:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	435.793701171875	2	435.741314	869.468075	0.1819	7.926E-05	3.5187	0.0015332	3.7006	0.0016125	435.74303902030596	66.41	0.24378	66.41	66.288	66.531	0					8	5	2	0	0	0	0.028476	1	6146	6146		24.203	1.1603	1	98110	+		24617	26050	20136	20160	27414	27414					0.028119416223944427
KLPPHLSQL	9	Unmodified	_KLPPHLSQL_					0	0	0			REV__ENSG00000003756|ENST00000347869|RBM5	REV__ENSG00000003756|ENST00000347869|RBM5	MULTI-MSMS	OvCa99_classI_Rep5	1	516.8150024414062	2	516.813659	1031.61277	3.078	0.0015908	-1.0556	-0.00054553	2.0225	0.0010452	516.8129480048489	97.681	0.97916	97.681	97.397	98.376	0					60	22	4	0	0	0	0.22621	1	10723	10723		71.877	5.4482	1	3809800	+		24618	16375	20137	20161	27415	27415					0.09822326093922129
KLPPWKRES	9	Unmodified	_KLPPWKRES_					0	0	0			REV__chr10:114340731-114366629|201|10.21|0.09|6.8|-|1|TE_info:L4_C_Mam,L4_C_Mam_dup3419,RTE-X,LINE,donor,-,114366629,114366681|AFAP1L2,None|2	REV__chr10:114340731-114366629|201|10.21|0.09|6.8|-|1|TE_info:L4_C_Mam,L4_C_Mam_dup3419,RTE-X,LINE,donor,-,114366629,114366681|AFAP1L2,None|2	MULTI-MSMS	OvCa9_classI_Rep4_	4	570.8261108398438	2	570.82984	1139.64513	-0.85503	-0.00048808	-3.2605	-0.0018612	-4.1156	-0.0023493	570.8278920258332	45.813	1.2516	42.774	42.386	43.637	-3.0385					70	23	4	0	0	0	0.19758	1	2368	2368		76.774	7.1465	1	348530	+		24619	15842	20138	20162	27416	27416					0.08089113496885147
KLPPWKRES	9	Unmodified	_KLPPWKRES_					0	0	0			REV__chr10:114340731-114366629|201|10.21|0.09|6.8|-|1|TE_info:L4_C_Mam,L4_C_Mam_dup3419,RTE-X,LINE,donor,-,114366629,114366681|AFAP1L2,None|2	REV__chr10:114340731-114366629|201|10.21|0.09|6.8|-|1|TE_info:L4_C_Mam,L4_C_Mam_dup3419,RTE-X,LINE,donor,-,114366629,114366681|AFAP1L2,None|2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	570.82984	1139.64513	-0.80418	-0.00045905	-3.2295	-0.0018435	-4.0337	-0.0023026	570.8279481158457	45.581	0.95047	42.872	42.497	43.448	-2.7097	0.048806	2.2597E-05	NaN	76.774	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89259	+		24620	15842	20138	20162							0.08089113496885147
KLPRRIRPL	9	Unmodified	_KLPRRIRPL_					0	0	0			REV__ENST00000595564.5_1_19:39880768-39881769:-|nuORF	REV__ENST00000595564.5_1_19:39880768-39881769:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	574.8370971679688	2	574.890567	1147.76658	-1.3287	-0.00076388	-2.6505	-0.0015238	-3.9793	-0.0022876	574.8904100211797	90.9	0.25251	88.82	88.67	88.923	-2.0805					7	4	2	0	0	0	0.027462	1	5680	5680		11.511	0	1	10747	+		24621	23746	20139	20163	27417	27417					0.19860780650083143
KLPVQKRA	8	Unmodified	_KLPVQKRA_					0	0	0			REV__ENST00000569916.1_1_16:58633100-58633220:-|nuORF	REV__ENST00000569916.1_1_16:58633100-58633220:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.2882385253906	2	470.308544	938.602535	0.46891	0.00022053	-0.38625	-0.00018166	0.082662	3.8877E-05	470.3082776367522	71.995	0.94386	71.995	71.548	72.492	0					29	22	2	0	0	0	0.028476	1	6964	6964		31.955	0	1	356950	+		24622	27729	20140	20164	27418	27418					0.13077763159310507
KLPVSLLE	8	Unmodified	_KLPVSLLE_					0	0	0			REV__nc|ENSG00000134108|Q9NVJ2-2|ARL8B	REV__nc|ENSG00000134108|Q9NVJ2-2|ARL8B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.77081298828125	2	449.784036	897.553519	-0.66861	-0.00030073	0.82897	0.00037286	0.16036	7.2126E-05	449.7842664794257	95.465	1.0569	92.996	92.711	93.768	-2.4685					40	20	4	0	0	0	0.028476	1	8393	8393		24.203	5.8783	1	62200	+		24623	28861	20141	20165	27419	27419					0.10064430079717113
KLPVSLLE	8	Unmodified	_KLPVSLLE_					0	0	0			REV__nc|ENSG00000134108|Q9NVJ2-2|ARL8B	REV__nc|ENSG00000134108|Q9NVJ2-2|ARL8B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	449.784036	897.553519	2.2339	0.0010048	-1.6835	-0.00075723	0.55038	0.00024755	449.7831236430927	94.168	1.0037	93.068	92.749	93.752	-1.0995	0.050386	-0.0013719	NaN	17.365	30	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37958	+		24624	28861	20141	20165							0.10064430079717113
KLPVSLLE	8	Unmodified	_KLPVSLLE_					0	0	0			REV__nc|ENSG00000134108|Q9NVJ2-2|ARL8B	REV__nc|ENSG00000134108|Q9NVJ2-2|ARL8B	MULTI-MATCH	OvCa9_classI_Rep3	3		2	449.784036	897.553519	-0.35525	-0.00015979	0.68838	0.00030962	0.33313	0.00014984	449.78414645160683	94.885	1.0514	92.989	92.662	93.713	-1.8956	-0.028759	0.00076177	NaN	17.365	30	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51079	+		24625	28861	20141	20165							0.10064430079717113
KLPWGFHL	8	Unmodified	_KLPWGFHL_					0	0	0		ENST00000538265.5_1_17:41605518-41605791:-|nuORF	ENST00000538265.5_1_17:41605518-41605791:-|nuORF	ENST00000538265.5_1_17:41605518-41605791:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.76812744140625	2	499.284537	996.554522	-0.22316	-0.00011142	1.2858	0.00064199	1.0627	0.00053057	499.2864450644853	66.846	0.68857	63.355	62.951	63.64	-3.4902					23	13	3	0	0	0	0.028476	1	4873	4873		28.254	11.549	1	31023			24626	13420	20142	20166	27420	27420					0.05610689239290423
KLQALGPLGY	10	Unmodified	_KLQALGPLGY_					0	0	0			REV__ENSG00000167136|ENST00000372642|ENDOG	REV__ENSG00000167136|ENST00000372642|ENDOG	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.2573852539062	2	530.313492	1058.61243	-1.9219	-0.0010192	-3.1138	-0.0016513	-5.0356	-0.0026705	530.3120039480034	45.326	0.78166	42.288	42.023	42.805	-3.0385					18	14	2	0	0	0	0.026982	1	2309	2309		23.042	12.858	1	14555	+		24627	21256	20143	20167	27421	27421					0.08546906374044738
KLQARLGAES	10	Unmodified	_KLQARLGAES_					0	0	0		nc|ENSG00000144488|Q6ZVH7-3|ESPNL;nc|ENSG00000144488|Q6ZVH7-2|ESPNL;ENSG00000144488|ENST00000343063|ESPNL	nc|ENSG00000144488|Q6ZVH7-3|ESPNL	nc|ENSG00000144488|Q6ZVH7-3|ESPNL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.8494262695312	2	536.809105	1071.60366	0.50192	0.00026944	-2.0407	-0.0010955	-1.5388	-0.00082605	536.8083684055333	85.121	0.68141	82.474	82.167	82.848	-2.6463					20	13	2	0	0	0	0.026994	1	7145	7145		32.812	0	1	71185			24628	5154	20144	20168	27422	27422					0.0707193273754001
KLQARLGAES	10	Unmodified	_KLQARLGAES_					0	0	0		nc|ENSG00000144488|Q6ZVH7-3|ESPNL;nc|ENSG00000144488|Q6ZVH7-2|ESPNL;ENSG00000144488|ENST00000343063|ESPNL	nc|ENSG00000144488|Q6ZVH7-3|ESPNL	nc|ENSG00000144488|Q6ZVH7-3|ESPNL	MULTI-MATCH	OvCa9_classI_Rep3	3		2	536.809105	1071.60366	0.078877	4.2342E-05	-2.5373	-0.0013621	-2.4585	-0.0013197	536.8081605105327	84.77	0.92973	82.509	82.114	83.044	-2.261	0.017085	-0.0001695	NaN	32.812	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100390			24629	5154	20144	20168							0.0707193273754001
KLQASTKIE	9	Unmodified	_KLQASTKIE_					0	0	0		tr|A0A7D6ZVD1|A0A7D6ZVD1_9CLOTABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03545PE=3SV=1	tr|A0A7D6ZVD1|A0A7D6ZVD1_9CLOTABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03545PE=3SV=1	tr|A0A7D6ZVD1|A0A7D6ZVD1_9CLOTABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03545PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	509.3015441894531	2	509.300581	1016.58661	0.73455	0.00037411	-0.98787	-0.00050312	-0.25332	-0.00012902	509.2999535995659	30.076	0.93833	27.366	27.063	28.002	-2.7097					40	18	3	0	0	0	0.53483	1	811	811		39.253	0.44669	1	131680			24630	35799	20145	20169	27423	27423					0.07898012131738597
KLQAVVPLPDA	11	Unmodified	_KLQAVVPLPDA_					0	0	0		nc|ENSG00000149972|O94779-2|CNTN5;ENSG00000149972|ENST00000524871|CNTN5	nc|ENSG00000149972|O94779-2|CNTN5	nc|ENSG00000149972|O94779-2|CNTN5	MULTI-MSMS	OvCa9_classI_Rep2	2	575.843017578125	2	575.845156	1149.67576	-2.8608	-0.0016474	-0.58729	-0.00033819	-3.4481	-0.0019856	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.70865	1	14654	14654		26.693	0	1	356230			24631	5497	20146	20170	27424	27424					0.10690847091291289
KLQAVVPLPDA	11	Unmodified	_KLQAVVPLPDA_					0	0	0		nc|ENSG00000149972|O94779-2|CNTN5;ENSG00000149972|ENST00000524871|CNTN5	nc|ENSG00000149972|O94779-2|CNTN5	nc|ENSG00000149972|O94779-2|CNTN5	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8428955078125	2	575.845156	1149.67576	-4.018	-0.0023138	0.54994	0.00031668	-3.4681	-0.0019971	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.69081	3	12343	12150;12156;12343		32.812	1.0549	1	445630			24632	5497	20146	20170	27425;27426;27427	27427					0.10690847091291289
KLQAVVPLPDA	11	Unmodified	_KLQAVVPLPDA_					0	0	0		nc|ENSG00000149972|O94779-2|CNTN5;ENSG00000149972|ENST00000524871|CNTN5	nc|ENSG00000149972|O94779-2|CNTN5	nc|ENSG00000149972|O94779-2|CNTN5	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8427734375	2	575.845156	1149.67576	-1.5734	-0.00090602	-1.7064	-0.00098265	-3.2798	-0.0018887	575.8439449675558	145.55	4.7888	144.12	142.78	147.57	-1.4357					360	93	6	0	0	0	0.70865	1	14391	14391		26.693	2.4902	1	565210			24633	5497	20146	20170	27428	27428					0.10690847091291289
KLQDGLLHI	9	Unmodified	_KLQDGLLHI_					0	0	0		ENSG00000102265|ENST00000218388|TIMP1;ENST00000456754.6_1_X:47444724-47445414:+|nuORF	ENSG00000102265|ENST00000218388|TIMP1	ENSG00000102265|ENST00000218388|TIMP1	MULTI-MSMS	OvCa99_classI_Rep5	1	518.8126220703125	2	518.811116	1035.60768	2.2796	0.0011827	0.019354	1.0041E-05	2.2989	0.0011927	518.8109798404588	86.572	0.74313	86.572	86.311	87.054	0					41	17	3	0	0	0	0.013607	1	9132	9132		157.33	22.518	1	2746900			24634	2234	20148	20171	27429	27429					0.09130022231283874
KLQDGVHII	9	Unmodified	_KLQDGVHII_					0	0	0		ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;nc|ENSG00000183520|Q9Y3A2-2|UTP11	ENSG00000183520|ENST00000373014|UTP11	ENSG00000183520|ENST00000373014|UTP11	MULTI-MSMS	OvCa99_classI_Rep5	1	511.805419921875	2	511.803291	1021.59203	-0.0756	-3.8692E-05	-0.31612	-0.00016179	-0.39172	-0.00020049	511.8029254778357	71.016	0.82898	71.016	70.839	71.668	0					49	20	3	0	0	0	0.045281	1	6847	6847		122.18	17.429	1	3329900			24635	8081	20149	20172	27430	27430					0.08209735714228827
KLQDGVHII	9	Unmodified	_KLQDGVHII_					0	0	0		ENSG00000183520|ENST00000373014|UTP11;ENST00000488453.1_1_1:38483328-38489297:+|nuORF;nc|ENSG00000183520|Q9Y3A2-2|UTP11	ENSG00000183520|ENST00000373014|UTP11	ENSG00000183520|ENST00000373014|UTP11	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	511.803291	1021.59203	-0.59406	-0.00030404	0.62166	0.00031817	0.027601	1.4126E-05	512.305088413403	74.147	0.52133	70.916	70.816	71.337	-3.2308	-0.049962	0.00079087	NaN	122.18	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27059			24636	8081	20149	20172							0.08209735714228827
KLQDQHLTVSL	11	Unmodified	_KLQDQHLTVSL_					0	0	0			REV__ENST00000566636.5_1_16:88724305-88725183:-|nuORF	REV__ENST00000566636.5_1_16:88724305-88725183:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.3615112304688	2	641.361702	1280.70885	1.178	0.00075555	-3.2708	-0.0020978	-2.0927	-0.0013422	641.3595241554856	37.402	1.3446	34.509	34.192	35.536	-2.8925					74	26	4	0	0	0	0.69589	1	1360	1360		28.081	0	1	265120	+		24637	21281	20150	20173	27431	27431					0.07972429143296722
KLQELINHK	9	Unmodified	_KLQELINHK_					0	0	0		nc|ENSG00000114107|Q8NHQ1-2|CEP70;nc|ENSG00000114107|Q8NHQ1-5|CEP70;nc|ENSG00000114107|Q8NHQ1-4|CEP70;ENSG00000114107|ENST00000264982|CEP70	nc|ENSG00000114107|Q8NHQ1-2|CEP70	nc|ENSG00000114107|Q8NHQ1-2|CEP70	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.7675170898438	2	561.835123	1121.65569	0.32164	0.00018071	0.2658	0.00014933	0.58743	0.00033004	561.8350340565156	42.888	0.30331	42.888	42.753	43.057	0					8	6	2	0	0	0	0.027462	1	2796	2796		24.203	0	1	48163			24638	3012	20151	20174	27432	27432					0.09973096151315985
KLQELKKYG	9	Unmodified	_KLQELKKYG_					0	0	0		ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8300170898438	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.61208	1	14277	14277		30.504	5.9844	1	245610			24639	6401	20152	20175	27433	27433					0.10094577919812764
KLQELKKYG	9	Unmodified	_KLQELKKYG_					0	0	0		ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	ENSG00000164070|ENST00000296464|HSPA4L	MULTI-MSMS	OvCa9_classI_Rep3	3	553.829833984375	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.63422	1	11915	11915		27.882	2.3082	1	308210			24640	6401	20152	20175	27434	27434					0.10094577919812764
KLQEQIFHL	9	Unmodified	_KLQEQIFHL_					0	0	0		ENST00000470876.1_1_5:133900168-133909634:+|nuORF;nc|ENSG00000043143|Q9NQC1-3|JADE2;nc|ENSG00000043143|Q9NQC1-2|JADE2;nc|ENSG00000043143|Q9NQC1|JADE2;ENSG00000043143|ENST00000681547|JADE2	ENST00000470876.1_1_5:133900168-133909634:+|nuORF	ENST00000470876.1_1_5:133900168-133909634:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	578.330078125	2	578.329673	1154.64479	2.3867	0.0013803	-0.22084	-0.00012772	2.1658	0.0012526	578.3291454622605	89.332	0.48087	89.332	89.119	89.6	0					24	11	3	0	0	0	0.14855	1	9542	9542		85.161	8.3867	1	1057800			24641	12370	20153	20176	27435	27435					0.07365693777023807
KLQGEDINL	9	Unmodified	_KLQGEDINL_					0	0	0		tr|A0A7D6W0W7|A0A7D6W0W7_9CLOTWingedhelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01420PE=4SV=1	tr|A0A7D6W0W7|A0A7D6W0W7_9CLOTWingedhelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01420PE=4SV=1	tr|A0A7D6W0W7|A0A7D6W0W7_9CLOTWingedhelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01420PE=4SV=1	MSMS	OvCa9_classI_Rep2	2	515.2830810546875	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.54	1	106.23	105.73	106.73	-0.30836								0	0	0	0.022622	1	9923	9923		96.19	5.5896	1				24642	35389	20154	20177	27436	27436					0.037091352350216766
KLQITHENI	9	Unmodified	_KLQITHENI_					0	0	0		ENSG00000125170|ENST00000340099|DOK4;DOK4|p.W271Cfs*39|1|0.07|ENSG00000125170|chr16:57473662-57473662|C/-|frameshift_variant;ENST00000561659.5_1_16:57508703-57509771:-|nuORF	ENSG00000125170|ENST00000340099|DOK4	ENSG00000125170|ENST00000340099|DOK4	MULTI-MSMS	OvCa99_classI_Rep5	1	548.3060302734375	2	548.31148	1094.60841	-0.90646	-0.00049702	0.39009	0.00021389	-0.51636	-0.00028313	548.3115968054894	50.279	1.3471	50.279	49.944	51.291	0					98	30	5	0	0	0	0.20111	1	3840	3840		76.17	7.3235	1	4443600			24643	759	20155	20178	27437	27437					0.06488816880323611
KLQKLKEDKVW	11	Unmodified	_KLQKLKEDKVW_					0	0	0			REV__nc|ENSG00000137807|Q02241-3|KIF23	REV__nc|ENSG00000137807|Q02241-3|KIF23	MULTI-MSMS	OvCa9_classI_Rep3	3	472.283203125	3	472.285405	1413.83439	-6.0448	-0.0028549	2.5608	0.0012094	-3.484	-0.0016454	472.28675973301637	159.08	3.3809	157.81	156.71	160.09	-1.267					177	72	4	0	0	0	0.72516	1	13710	13710		13.508	3.8618	1	110830	+		24644	19479	20156	20179	27438	27438					0.14402140999527546
KLQKNFLTQ	9	Unmodified	_KLQKNFLTQ_					0	0	0		ENSG00000203942|ENST00000370640|C10orf62	ENSG00000203942|ENST00000370640|C10orf62	ENSG00000203942|ENST00000370640|C10orf62	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.3306884765625	2	560.329673	1118.64479	0.95812	0.00053686	-1.475	-0.0008265	-0.5169	-0.00028964	560.3287234755392	74.884	0.77208	71.653	71.337	72.109	-3.2308					50	15	4	0	0	0	0.27001	1	5884	5884		66.429	1.272	1	666350			24645	8940	20157	20180	27439	27439					0.09021693777026485
KLQKPNTAI	9	Unmodified	_KLQKPNTAI_					0	0	0		ENST00000456632.1_1_X:92543289-92543514:-|nuORF	ENST00000456632.1_1_X:92543289-92543514:-|nuORF	ENST00000456632.1_1_X:92543289-92543514:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	506.81011962890625	2	506.811116	1011.60768	1.4081	0.00071364	-2.4174	-0.0012251	-1.0093	-0.00051151	506.809990859047	88.555	2.3705	87.187	86.69	89.061	-1.3676					168	47	5	0	0	0	0.19758	1	7822	7822		76.774	14.667	1	5233500			24646	12113	20158	20181	27440	27440					0.10234022231270501
KLQKRMKED	9	Unmodified	_KLQKRMKED_					0	0	0			REV__SSRP1|p.K516M|1|0.05|ENSG00000149136|chr11:57328361-57328361|T/A|missense_variant	REV__SSRP1|p.K516M|1|0.05|ENSG00000149136|chr11:57328361-57328361|T/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.3103637695312	2	588.33189	1174.64923	-0.85744	-0.00050446	-1.1068	-0.00065119	-1.9643	-0.0011556	588.3308382758596	59.514	0.15883	59.514	59.452	59.611	0					5	3	2	0	0	0	0.027462	1	5146	5146		45.952	0	1	263660	+		24647	29456	20159	20182	27441	27441					0.06888834928304277
KLQLTYMEET	10	Unmodified	_KLQLTYMEET_					0	0	0		ITGA9|p.V741Gfs*12|1|0.08|ENSG00000144668|chr3:37736969-37736970|-/G|frameshift_variant;ITGA9|p.T742Lfs*28|1|0.06|ENSG00000144668|chr3:37736971-37736972|-/GTTGCAAATATTAGACCATTGCC|frameshift_variant;ENSG00000144668|ENST00000264741|ITGA9	ITGA9|p.V741Gfs*12|1|0.08|ENSG00000144668|chr3:37736969-37736970|-/G|frameshift_variant	ITGA9|p.V741Gfs*12|1|0.08|ENSG00000144668|chr3:37736969-37736970|-/G|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.1865539550781	3	419.212806	1254.61659	-0.0772	-3.2363E-05	-1.1098	-0.00046523	-1.187	-0.00049759	419.21219135914254	29.245	0.29943	29.245	29.087	29.387	0					7	5	2	0	0	0	0.026956	1	1014	1014		14.086	0	1	10292			24648	5171	20160	20183	27442	27442					-0.0005341698522443039
KLQLVTGL	8	Unmodified	_KLQLVTGL_					0	0	0			REV__ENSG00000179295|ENST00000351677|PTPN11	REV__ENSG00000179295|ENST00000351677|PTPN11	MULTI-SECPEP	OvCa99_classI_Rep5	1	437.2749328613281	2	436.284203	870.553853	3.1528	0.0013755	-0.90279	-0.00039387	2.2501	0.00098166	436.283659432329	84.682	0.37307	84.682	84.55	84.923	0					12	8	2	0	0	0	0.028476	1	8845	8845		27.882	0	1	280410	+		24649	22117	20161	20184	27443	27443					0.11339849799560398
KLQMMMRY	8	Unmodified	_KLQMMMRY_					0	0	0			REV__ENST00000325083.12_1_8:17815084-17817658:+|nuORF	REV__ENST00000325083.12_1_8:17815084-17817658:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	550.7782592773438	2	550.774308	1099.53406	0.80696	0.00044445	4.3324	0.0023862	5.1394	0.0028306	550.7766079098886	142.56	1.2283	142.56	142.29	143.51	0					46	24	3	0	0	0	0.69415	1	16691	16691		44.531	2.1349	1	1016300	+		24650	24481	20162	20185	27444	27444					-0.011723087987093095
KLQMRAKP	8	Unmodified	_KLQMRAKP_					0	0	0			REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.2820739746094	2	486.294579	970.574605	0.36645	0.0001782	0.53669	0.00026099	0.90314	0.00043919	486.29466666680787	96.514	0.39459	95.555	95.431	95.825	-0.95857					10	7	2	0	0	0	0.028476	1	8727	8727		35.201	0	1	24757	+		24651	21336	20163	20186	27445	27445					0.08814116907569769
KLQNKEHVI	9	Unmodified	_KLQNKEHVI_					0	0	0		ENST00000444036.1_1_21:34213912-34214044:-|nuORF;ENST00000431607.1_1_9:119942983-119943337:-|nuORF;ENST00000491035.5_1_X:153628724-153629192:+|nuORF;ENST00000467168.5_1_X:153626860-153629039:+|nuORF;ENSG00000147403|ENST00000369817|RPL10	ENST00000444036.1_1_21:34213912-34214044:-|nuORF	ENST00000444036.1_1_21:34213912-34214044:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	554.826904296875	2	554.827298	1107.64004	-0.54368	-0.00030165	-0.098722	-5.4774E-05	-0.6424	-0.00035642	554.8272222321514	33.897	0.52874	33.897	33.632	34.161	0					37	10	5	0	0	0	0.059253	2	1584	1584;1607		113.41	23.042	1	2113700			24652	5353	20164	20187	27446;27447	27446					0.09052809634272307
KLQPETTQN	9	Unmodified	_KLQPETTQN_					0	0	0			REV__nc|ENSG00000116701|P19878-2|NCF2	REV__nc|ENSG00000116701|P19878-2|NCF2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.8120727539062	2	529.77747	1057.54039	-1.7503	-0.00092725	1.6903	0.0008955	-0.059922	-3.1745E-05	529.778300077293	71.419	1.2717	67.963	67.677	68.949	-3.4563					46	25	3	0	0	0	0.027448	1	5515	5515		35.618	8.571	1	314400	+		24653	18313	20165	20188	27448	27448					0.01391947229649304
KLQPRENL	8	Unmodified	_KLQPRENL_					0	0	0		nc|ENSG00000127980|O43933-2|PEX1;ENSG00000127980|ENST00000248633|PEX1;ENST00000484913.5_1_7:92116773-92148321:-|nuORF;ENST00000476923.1_1_7:92140242-92143269:-|nuORF	nc|ENSG00000127980|O43933-2|PEX1	nc|ENSG00000127980|O43933-2|PEX1	MULTI-MSMS	OvCa99_classI_Rep5	1	499.2934875488281	2	499.293091	996.571629	1.4769	0.00073742	-0.033757	-1.6855E-05	1.4432	0.00072056	499.2929637979914	74.74	0.73471	74.74	74.517	75.251	0					48	17	4	0	0	0	0.6345	1	7421	7421		56.721	3.3696	1	13993000			24654	3857	20166	20189	27449	27449					0.07320565054419603
KLQQLVCLQ	9	Unmodified	_KLQQLVCLQ_					0	0	0			REV__ENSG00000117724|ENST00000366955|CENPF	REV__ENSG00000117724|ENST00000366955|CENPF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.235595703125	2	536.812802	1071.61105	-0.040091	-2.1521E-05	2.3675	0.0012709	2.3274	0.0012494	536.8144536278663	46.915	0.13221	46.915	46.852	46.985	0					4	2	2	0	0	0	0.027462	1	3341	3341		47.916	7.343	1	53515	+		24655	18367	20167	20190	27450	27450					0.07810949013628488
KLQQSVKLL	9	Unmodified	_KLQQSVKLL_					0	0	0			REV__ENST00000460355.1_1_2:204048009-204055133:+|nuORF	REV__ENST00000460355.1_1_2:204048009-204055133:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.2609252929688	2	528.842416	1055.67028	-0.39109	-0.00020683	-0.58818	-0.00031105	-0.97927	-0.00051788	528.8420199605033	68.531	0.70454	68.531	68.315	69.019	0					35	16	3	0	0	0	0.027462	1	6466	6466		40.778	10.46	1	1443000	+		24656	26079	20168	20191	27451	27451					0.14467168299461264
KLQQVMQAK	9	Unmodified	_KLQQVMQAK_					0	0	0		nc|ENSG00000163939|Q86U86-6|PBRM1;PBRM1|p.L1158Qfs*12|1|0.03|ENSG00000163939|chr3:52579114-52579115|-/ACTAAATTCTGGGGCTGAAAAGTACAATAACT|frameshift_variant;nc|ENSG00000163939|Q86U86-5|PBRM1;nc|ENSG00000163939|Q86U86-4|PBRM1;nc|ENSG00000163939|Q86U86-7|PBRM1;nc|ENSG00000163939|Q86U86-3|PBRM1;nc|ENSG00000163939|Q86U86-9|PBRM1;nc|ENSG00000163939|Q86U86-2|PBRM1;nc|ENSG00000163939|Q86U86-8|PBRM1;nc|ENSG00000163939|Q86U86|PBRM1;ENSG00000163939|ENST00000707071|PBRM1	nc|ENSG00000163939|Q86U86-6|PBRM1	nc|ENSG00000163939|Q86U86-6|PBRM1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.3120727539062	2	537.310426	1072.6063	0.34561	0.0001857	3.2718	0.001758	3.6174	0.0019437	537.3118057903463	97.095	0.44364	94.669	94.42	94.863	-2.4256					13	8	2	0	0	0	0.027462	1	8580	8580		37.159	0	1	56498			24657	6382	20169	20192	27452	27452					0.0729006487085826
KLQRAIVSI	9	Unmodified	_KLQRAIVSI_					0	0	0		nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	MULTI-MSMS	OvCa99_classI_Rep5	1	514.3358154296875	2	514.334759	1026.65496	-0.89644	-0.00046107	0.91869	0.00047252	0.02225	1.1444E-05	514.3351671460264	66.14	0.91231	66.14	65.904	66.816	0					57	22	4	0	0	0	0.27001	1	6104	6104		66.429	22.312	1	6876900			24658	4692	20170	20193	27453	27453					0.14270301502256189
KLQVYRLF	8	Unmodified	_KLQVYRLF_					0	0	0		ENST00000514473.2_1_14:22951844-22951934:-|nuORF	ENST00000514473.2_1_14:22951844-22951934:-|nuORF	ENST00000514473.2_1_14:22951844-22951934:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.7975463867188	2	533.824027	1065.6335	2.0329	0.0010852	2.966	0.0015833	4.9988	0.0026685	533.8253973991558	91.88	0.54819	91.88	91.753	92.301	0					22	12	2	0	0	0	0.028476	1	9950	9950		20.482	8.275	1	266640			24659	13030	20171	20194	27454	27454					0.10330916473549223
KLQYLRILN	9	Unmodified	_KLQYLRILN_					0	0	0		ENSG00000147234|ENST00000683843|FRMPD3;FRMPD3|p.P1368Afs*32|1|0.3|ENSG00000147234|chrX:107602041-107602062|GCCAGAGGCTGGCCCAGGCGTG/-|frameshift_variant	ENSG00000147234|ENST00000683843|FRMPD3	ENSG00000147234|ENST00000683843|FRMPD3	MULTI-MSMS	OvCa99_classI_Rep5	1	580.8607788085938	2	580.861141	1159.70773	1.3641	0.00079234	0.77583	0.00045065	2.1399	0.001243	580.8615012230753	79.544	0.55104	79.544	79.276	79.827	0					30	13	3	0	0	0	0.55588	1	8132	8132		37.159	0.71236	1	1112400			24660	5344	20172	20195	27455	27455					0.13426259565085275
KLRACGRPEA	10	Unmodified	_KLRACGRPEA_					0	0	0			REV__ENST00000575214.1_1_16:3073840-3074149:-|nuORF	REV__ENST00000575214.1_1_16:3073840-3074149:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.8405151367188	2	550.8033	1099.59205	-0.70431	-0.00038793	-3.744	-0.0020622	-4.4483	-0.0024501	550.8010935164199	35.173	0.60918	35.173	35.004	35.614	0					27	12	3	0	0	0	0.026994	1	1739	1739		19.104	4.2386	1	156800	+		24661	27771	20173	20196	27456	27456					0.04623412442583685
KLRATGSIVK	10	Unmodified	_KLRATGSIVK_					0	0	0		tr|A0A7D6W3N6|A0A7D6W3N6_9CLOTDNAtopoisomerase1OS=ClostridiumintestinaleOX=36845GN=topAPE=3SV=1	tr|A0A7D6W3N6|A0A7D6W3N6_9CLOTDNAtopoisomerase1OS=ClostridiumintestinaleOX=36845GN=topAPE=3SV=1	tr|A0A7D6W3N6|A0A7D6W3N6_9CLOTDNAtopoisomerase1OS=ClostridiumintestinaleOX=36845GN=topAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.8446655273438	2	536.84549	1071.67643	-1.0024	-0.00053811	-0.61	-0.00032747	-1.6123	-0.00086558	536.8451277980017	36.729	1.3639	36.729	36.487	37.851	0					64	29	5	0	0	0	0.42082	1	1974	1974		65.465	1.2581	1	3866400			24662	35456	20174	20197	27457	27457					0.14345686530987223
KLRDIQSL	8	Unmodified	_KLRDIQSL_					0	0	0			REV__tr|A0A553SNS0|A0A553SNS0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24965PE=4SV=1	REV__tr|A0A553SNS0|A0A553SNS0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24965PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	486.7955017089844	2	486.795466	971.57638	-0.54338	-0.00026452	0.2101	0.00010227	-0.33329	-0.00016224	486.7955576444338	41.442	0.87295	41.442	41.195	42.068	0					49	19	3	0	0	0	0.59148	1	2604	2604		65.803	0	1	4244300	+		24663	30444	20175	20198	27458	27458					0.08945449197187827
KLRDLEDSL	9	Unmodified	_KLRDLEDSL_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000368298.2_1_1:156104977-156106341:+|nuORF;ENST00000496738.5_1_1:156104620-156106879:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	OvCa99_classI_Rep5	1	544.8028564453125	2	544.800946	1087.58734	0.39975	0.00021778	-0.40822	-0.0002224	-0.0084757	-4.6175E-06	544.8006414745186	72.427	1.0686	72.427	72.086	73.155	0					81	26	5	0	0	0	0.03923	2	7060	7032;7060		127.46	11.968	1	12627000			24664	6091	20176	20199	27459;27460	27460					0.04704806780796389
KLREIEQQI	9	Unmodified	_KLREIEQQI_					0	0	0		MED12|p.K1768Qfs*3|1|0.17|ENSG00000184634|chrX:71136550-71136551|-/C|frameshift_variant;nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	MED12|p.K1768Qfs*3|1|0.17|ENSG00000184634|chrX:71136550-71136551|-/C|frameshift_variant	MED12|p.K1768Qfs*3|1|0.17|ENSG00000184634|chrX:71136550-71136551|-/C|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	578.8399047851562	2	578.837862	1155.66117	-0.51274	-0.00029679	0.23412	0.00013552	-0.27861	-0.00016127	578.8380033521025	58.592	1.7164	58.592	58.363	60.079	0					84	43	4	0	0	0	0.049969	1	4978	4978		118.74	14.686	1	10155000			24665	8177	20177	20200	27461	27461					0.08956774943112578
KLREIFGLY	9	Unmodified	_KLREIFGLY_					0	0	0		nc|ENSG00000079332|Q9NR31-2|SAR1A;ENSG00000079332|ENST00000373241|SAR1A	nc|ENSG00000079332|Q9NR31-2|SAR1A	nc|ENSG00000079332|Q9NR31-2|SAR1A	MULTI-MSMS	OvCa9_classI_Rep3	3	569.8352661132812	2	569.834591	1137.65463	-0.6563	-0.00037398	-0.12934	-7.3703E-05	-0.78564	-0.00044768	569.8345222869018	99.284	4.3485	97.599	97.322	101.67	-1.685					272	84	6	0	0	0	0.18193	2	6676	6676;6802		79.451	1.3758	1	12084000			24666	1613	20178	20201	27462;27463	27462					0.09130881782425604
KLREKSEAI	9	Unmodified	_KLREKSEAI_					0	0	0		nc|ENSG00000164828|O94901-6|SUN1;nc|ENSG00000164828|O94901-5|SUN1;ENSG00000164828|ENST00000401592|SUN1;nc|ENSG00000164828|O94901-9|SUN1;ENST00000475971.5_1_7:893033-912965:+|nuORF;ENST00000413171.6_1_7:892397-912965:+|nuORF	nc|ENSG00000164828|O94901-6|SUN1	nc|ENSG00000164828|O94901-6|SUN1	MULTI-MSMS	OvCa99_classI_Rep5	1	537.3193359375	2	537.319306	1072.62406	-0.027459	-1.4754E-05	-0.27598	-0.00014829	-0.30344	-0.00016305	537.3191426247306	30.756	0.64083	30.756	30.483	31.124	0					29	12	3	0	0	0	0.1944	1	1206	1206		77.318	13.11	1	933080			24667	6490	20179	20202	27464	27464					0.09065103397369967
KLREKSEAI	9	Unmodified	_KLREKSEAI_					0	0	0		nc|ENSG00000164828|O94901-6|SUN1;nc|ENSG00000164828|O94901-5|SUN1;ENSG00000164828|ENST00000401592|SUN1;nc|ENSG00000164828|O94901-9|SUN1;ENST00000475971.5_1_7:893033-912965:+|nuORF;ENST00000413171.6_1_7:892397-912965:+|nuORF	nc|ENSG00000164828|O94901-6|SUN1	nc|ENSG00000164828|O94901-6|SUN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	537.319306	1072.62406	-1.8266	-0.00098146	1.6825	0.00090406	-0.14404	-7.7396E-05	537.3199765695806	33.454	0.74496	30.744	30.571	31.316	-2.7097	-0.005932	0.001544	NaN	77.318	24	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77518			24668	6490	20179	20202							0.09065103397369967
KLRESHSLK	9	Unmodified	_KLRESHSLK_					0	0	0			REV__tr|A0A553ST61|A0A553ST61_NIACIFMNdependentNADH:quinoneoxidoreductaseOS=NialliacirculansOX=1397GN=azoRPE=3SV=1	REV__tr|A0A553ST61|A0A553ST61_NIACIFMNdependentNADH:quinoneoxidoreductaseOS=NialliacirculansOX=1397GN=azoRPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	549.3244018554688	2	549.324922	1096.63529	-0.98301	-0.00053999	0.22894	0.00012576	-0.75407	-0.00041423	549.3249270787226	44.314	0.71626	44.314	44.123	44.84	0					28	15	3	0	0	0	0.61365	1	2988	2988		30.318	1.1682	1	1585300	+		24669	30920	20180	20203	27465	27465					0.09083925491495393
KLREVKLS	8	Unmodified	_KLREVKLS_					0	0	0		nc|ENSG00000132256|Q9C035-6|TRIM5;nc|ENSG00000132256|Q9C035-5|TRIM5;nc|ENSG00000132256|Q9C035-4|TRIM5;nc|ENSG00000132256|Q9C035-3|TRIM5;nc|ENSG00000132256|Q9C035-2|TRIM5;ENSG00000132256|ENST00000380034|TRIM5	nc|ENSG00000132256|Q9C035-6|TRIM5	nc|ENSG00000132256|Q9C035-6|TRIM5	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.7955017089844	2	486.813659	971.612765	-0.50752	-0.00024707	-0.43272	-0.00021065	-0.94023	-0.00045772	486.8132543988258	41.397	0.57434	41.397	41.149	41.724	0					26	12	3	0	0	0	0.028476	1	2604	2604		60.972	0	1	580300			24670	4119	20181	20204	27466	27466					0.12582326093888696
KLRGEDLSW	9	Unmodified	_KLRGEDLSW_					0	0	0		ENST00000338257.12_1_19:8586334-8586478:-|nuORF	ENST00000338257.12_1_19:8586334-8586478:-|nuORF	ENST00000338257.12_1_19:8586334-8586478:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	551.8470458984375	2	552.29583	1102.57711	-0.22553	-0.00012456	3.9267	0.0021687	3.7012	0.0020442	552.798925202654	100.43	1.1904	99.6	99.162	100.35	-0.83051					64	23	5	0	0	0	0.027462	1	9258	9258		39.253	0	1	123090			24671	10533	20182	20205	27467	27467					0.029922438462335776
KLRGRGTSF	9	Unmodified	_KLRGRGTSF_					0	0	0			REV__ENST00000316623.9_1_15:48937070-48937901:-|nuORF	REV__ENST00000316623.9_1_15:48937070-48937901:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.7719421386719	2	511.298707	1020.58286	-0.61726	-0.0003156	-0.51698	-0.00026433	-1.1342	-0.00057993	511.2977826625629	39.991	0.86492	37.037	36.715	37.58	-2.9541					18	16	2	0	0	0	0.027462	1	1724	1724		39.253	20.928	1	39237	+		24672	24407	20183	20206	27468	27468					0.07339387148556398
KLRGVIPFL	9	Unmodified	_KLRGVIPFL_					0	0	0			REV__tr|A0A553ST63|A0A553ST63_NIACIAldose1-epimerasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_04285PE=4SV=1	REV__tr|A0A553ST63|A0A553ST63_NIACIAldose1-epimerasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_04285PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.2733764648438	2	521.84222	1041.66989	-1.0997	-0.00057386	-3.9086	-0.0020397	-5.0083	-0.0026136	521.8401054229361	73.753	1.0476	70.356	70.027	71.075	-3.3961					42	21	3	0	0	0	0.027462	1	5711	5711		11.511	4.7755	1	137730	+		24673	30921	20184	20207	27469	27469					0.15071793370248088
KLRHAESV	8	Unmodified	_KLRHAESV_					0	0	0		ENST00000296325.9_1_4:3514703-3533784:-|nuORF;ENSG00000163956|ENST00000650182|LRPAP1	ENST00000296325.9_1_4:3514703-3533784:-|nuORF	ENST00000296325.9_1_4:3514703-3533784:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	470.2721252441406	2	470.272158	938.529764	-0.84539	-0.00039756	0.73129	0.0003439	-0.1141	-5.3659E-05	470.2722899909073	27.415	0.65003	27.415	27.241	27.891	0					25	12	4	0	0	0	0.66992	1	803	803		49.442	10.42	1	320490			24674	6386	20185	20208	27470	27470					0.058040093658974
KLRHIVDEV	9	Unmodified	_KLRHIVDEV_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000587957.1_1_17:42953300-42956953:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MULTI-MSMS	OvCa99_classI_Rep5	1	554.828125	2	554.827298	1107.64004	-0.474	-0.00026299	-0.2013	-0.00011169	-0.6753	-0.00037467	554.8269784383859	49.307	1.787	49.307	48.807	50.594	0					76	40	4	0	0	0	0.26076	1	3667	3667		67.494	12.717	1	2890000			24675	2685	20186	20209	27471	27471					0.09052809634272307
KLRHKEVNKS	10	Unmodified	_KLRHKEVNKS_					0	0	0		ENST00000358463.2_1_16:73161256-73177677:-|nuORF	ENST00000358463.2_1_16:73161256-73177677:-|nuORF	ENST00000358463.2_1_16:73161256-73177677:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8693237304688	2	619.870028	1237.7255	-3.1194	-0.0019336	2.0434	0.0012667	-1.076	-0.00066696	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.79213	1	15168	15168		19.997	5.1319	1	806750			24676	10735	20187	20210	27472	27472					0.11614974819917734
KLRHLLCF	8	Unmodified	_KLRHLLCF_					0	0	0		nc|ENSG00000144488|Q6ZVH7-3|ESPNL;nc|ENSG00000144488|Q6ZVH7-2|ESPNL;ENSG00000144488|ENST00000343063|ESPNL;ENST00000477241.1_1_2:239037864-239040370:+|nuORF	nc|ENSG00000144488|Q6ZVH7-3|ESPNL	nc|ENSG00000144488|Q6ZVH7-3|ESPNL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.8289184570312	2	515.304947	1028.59534	2.8527	0.00147	3.2343	0.0016666	6.087	0.0031367	515.306506396111	134.65	1.1886	133.1	132.67	133.86	-1.5436					44	23	3	0	0	0	0.028476	1	12995	12995		37.028	1.8278	1	55763			24677	5154	20188	20211	27473	27473					0.08218707287255711
KLRKLDDAI	9	Unmodified	_KLRKLDDAI_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-MSMS	OvCa99_classI_Rep5	1	536.3296508789062	2	536.329673	1070.64479	-0.42212	-0.0002264	-0.26596	-0.00014264	-0.68808	-0.00036904	536.3296245131656	48.183	0.56033	48.183	47.941	48.501	0					34	12	3	0	0	0	0.37135	1	3529	3529		54.776	1.8396	1	2061700			24678	6883	20189	20212	27474	27474					0.11229693777022476
KLRKLEEQS	9	Unmodified	_KLRKLEEQS_					0	0	0		ENSG00000165105|ENST00000376447|RASEF	ENSG00000165105|ENST00000376447|RASEF	ENSG00000165105|ENST00000376447|RASEF	MULTI-SECPEP	OvCa9_classI_Rep2	2	566.8223266601562	2	565.830037	1129.64552	0.041302	2.337E-05	2.6666	0.0015088	2.7079	0.0015322	566.3331352095714	107.27	0.24737	106.96	106.87	107.12	-0.30836					6	4	2	0	0	0	0.027462	1	10008	10008		19.104	0	1	5244.7			24679	6520	20190	20213	27475	27475					0.0858848842608495
KLRKLKGVL	9	Unmodified	_KLRKLKGVL_					0	0	0		tr|A0A7D6VP34|A0A7D6VP34_9CLOTGTPdiphosphokinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15075PE=3SV=1	tr|A0A7D6VP34|A0A7D6VP34_9CLOTGTPdiphosphokinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15075PE=3SV=1	tr|A0A7D6VP34|A0A7D6VP34_9CLOTGTPdiphosphokinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15075PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.372802734375	2	527.876594	1053.73863	-2.797	-0.0014765	-4.3803	-0.0023122	-7.1773	-0.0037887	527.8739037455688	104.06	1.3561	104.06	103.22	104.58	0					59	31	4	0	0	0	0.027462	1	11656	11656		38.806	12.01	1	2981200			24680	34746	20191	20214	27476	27476					0.213914576699608
KLRKMILS	8	Unmodified	_KLRKMILS_					0	0	0		chr12:112406885-112408240|87|81.26|0.86|6.56|-|0|None,RPL6|1	chr12:112406885-112408240|87|81.26|0.86|6.56|-|0|None,RPL6|1	chr12:112406885-112408240|87|81.26|0.86|6.56|-|0|None,RPL6|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.2789306640625	2	494.82043	987.626307	0.26818	0.0001327	-3.9705	-0.0019647	-3.7023	-0.001832	494.8184207673899	83.82	0.72459	81.157	80.779	81.504	-2.6629					18	14	2	0	0	0	0.028476	1	6983	6983		31.955	1.4512	1	21714			24681	308	20192	20215	27477	27477					0.13199860601491764
KLRLKHRRSE	10	Unmodified	_KLRLKHRRSE_					0	0	0		ENSG00000138771|ENST00000296043|SHROOM3;SHROOM3|p.S620Qfs*25|1|0.54|ENSG00000138771|chr4:76740028-76740037|TCTTCCAGGC/-|frameshift_variant	ENSG00000138771|ENST00000296043|SHROOM3	ENSG00000138771|ENST00000296043|SHROOM3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	440.7486572265625	3	441.609105	1321.80549	-1.3268	-0.00058591	1.4389	0.00063544	0.11215	4.9528E-05	441.6096684885874	43.669	1.1199	40.662	40.273	41.393	-3.0074					33	21	2	0	0	0	0.027253	1	2163	2163		10.104	0	1	80239			24682	4728	20193	20216	27478	27478					0.15745461213759882
KLRLTGTKY	9	Unmodified	_KLRLTGTKY_					0	0	0		ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2783203125	2	540.332216	1078.64988	0.10965	5.9246E-05	-0.74967	-0.00040507	-0.64003	-0.00034583	540.3317710277046	70.78	0.86026	70.78	70.528	71.389	0					29	21	2	0	0	0	0.027462	1	6880	6880		32.812	3.6629	1	490780			24683	4677	20194	20217	27479	27479					0.11369997639667417
KLRPLSLTFTH	11	Unmodified	_KLRPLSLTFTH_					0	0	0			REV__ENSG00000182578|ENST00000675795|CSF1R	REV__ENSG00000182578|ENST00000675795|CSF1R	MULTI-SECPEP	OvCa9_classI_Rep4_	4	438.2479248046875	3	438.262712	1311.76631	-0.94685	-0.00041497	-3.6422	-0.0015962	-4.5891	-0.0020112	438.2616551875489	44.071	0.80156	41.063	40.793	41.595	-3.0074					33	15	3	0	0	0	0.025568	1	2173	2173		33.039	0	1	58227	+		24684	22303	20195	20218	27480	27480					0.12289316139549555
KLRQEIVE	8	Unmodified	_KLRQEIVE_					0	0	0		LRRC27|p.E336Sfs*21|1|0.13|ENSG00000148814|chr10:132351685-132351686|-/TCAAGCAGGTC|frameshift_variant;nc|ENSG00000148814|Q9C0I9-4|LRRC27;nc|ENSG00000148814|Q9C0I9-3|LRRC27;nc|ENSG00000148814|Q9C0I9-2|LRRC27;ENSG00000148814|ENST00000368614|LRRC27	LRRC27|p.E336Sfs*21|1|0.13|ENSG00000148814|chr10:132351685-132351686|-/TCAAGCAGGTC|frameshift_variant	LRRC27|p.E336Sfs*21|1|0.13|ENSG00000148814|chr10:132351685-132351686|-/TCAAGCAGGTC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.785888671875	2	507.800749	1013.58694	-0.36298	-0.00018432	-0.68274	-0.00034669	-1.0457	-0.00053102	507.80038992311364	67.712	0.58607	67.712	67.528	68.114	0					48	14	4	0	0	0	0.028476	1	6370	6370		47.657	0	1	3616700			24685	5424	20196	20219	27481	27481					0.08069431851606623
KLRQFEED	8	Unmodified	_KLRQFEED_					0	0	0			REV__nc|ENSG00000163075|Q4G0U5-3|CFAP221	REV__nc|ENSG00000163075|Q4G0U5-3|CFAP221	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.3067626953125	2	532.772188	1063.52982	0.68882	0.00036698	0.67678	0.00036057	1.3656	0.00072755	532.7726885327344	141.41	0.50052	141.41	141.23	141.74	0					14	9	2	0	0	0	0.028476	1	16500	16500		31.955	0	1	44954	+		24686	20805	20197	20220	27482	27482					0.0005996457523451681
KLRQLEEQV	9	Unmodified	_KLRQLEEQV_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2;ENST00000590400.1_1_19:11303345-11305238:-|nuORF	nc|ENSG00000197256|Q63ZY3-3|KANK2;REV__nc|ENSG00000089177|Q96L93-6|KIF16B	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	OvCa99_classI_Rep5	1	571.8294677734375	2	571.830037	1141.64552	-0.10716	-6.1276E-05	0.56293	0.0003219	0.45578	0.00026063	571.8301224936548	52.909	0.82587	52.909	52.434	53.26	0					32	18	3	0	0	0	0.1243	1	4183	4183		90.601	5.6853	1	1799400			24687	8694;17202	20198	20221	27483	27483					0.08036488426091637
KLRQNVTP	8	Unmodified	_KLRQNVTP_					0	0	0			REV__CYP51A1|p.S420L|1|0.19|ENSG00000001630|chr7:92117136-92117136|G/A|missense_variant	REV__CYP51A1|p.S420L|1|0.19|ENSG00000001630|chr7:92117136-92117136|G/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.8067932128906	2	478.287808	954.561064	-0.3041	-0.00014545	4.2084	0.0020128	3.9043	0.0018674	478.2896610579125	66.948	1.2392	64.287	63.9	65.139	-2.661					52	24	3	0	0	0	0.028476	1	5311	5311		17.365	4.4058	1	126330	+		24688	16264	20199	20222	27484	27484					0.0819658239997807
KLRQNVTP	8	Unmodified	_KLRQNVTP_					0	0	0			REV__CYP51A1|p.S420L|1|0.19|ENSG00000001630|chr7:92117136-92117136|G/A|missense_variant	REV__CYP51A1|p.S420L|1|0.19|ENSG00000001630|chr7:92117136-92117136|G/A|missense_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	478.287808	954.561064	1.4152	0.0006769	2.5542	0.0012217	3.9695	0.0018986	478.2888343385601	67.875	0.82873	64.385	64.136	64.965	-3.4902	0.048794	-0.0012922	NaN	11.511	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124020	+		24689	16264	20199	20222							0.0819658239997807
KLRRKLML	8	Unmodified	_KLRRKLML_					0	0	0			REV__tr|A0A553STB7|A0A553STB7_NIACIRibosomalproteinL29OS=NialliacirculansOX=1397GN=CEQ21_04545PE=4SV=1	REV__tr|A0A553STB7|A0A553STB7_NIACIRibosomalproteinL29OS=NialliacirculansOX=1397GN=CEQ21_04545PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.311279296875	2	529.354971	1056.69539	-0.72887	-0.00038583	-4.4228	-0.0023412	-5.1516	-0.002727	529.3523908815824	59.676	0.66172	59.676	59.377	60.039	0					34	16	3	0	0	0	0.028476	1	5125	5125		35.201	9.7505	1	1687700	+		24690	30945	20200	20223	27485	27485					0.16930944621049093
KLRRLPHTRGH	11	Unmodified	_KLRRLPHTRGH_					0	0	0			REV__ENSG00000141298|ENST00000540801|SSH2	REV__ENSG00000141298|ENST00000540801|SSH2	MULTI-MSMS	OvCa9_classI_Rep3	3	457.60809326171875	3	457.612849	1369.81672	-6.2055	-0.0028397	-4.0897	-0.0018715	-10.295	-0.0047112	457.6108688134911	157.03	3.4081	155.86	154.91	158.32	-1.1707					147	80	2	0	0	0	0.72545	1	13506	13506		9.6461	0.43434	1	68588	+		24691	19725	20201	20224	27486	27486					0.1466028330789868
KLRRMNETLRR	11	Unmodified	_KLRRMNETLRR_					0	0	0			REV__ENSG00000075240|ENST00000406902|GRAMD4	REV__ENSG00000075240|ENST00000406902|GRAMD4	MULTI-MSMS	OvCa99_classI_Rep5	1	491.9569091796875	3	491.624538	1471.85178	-0.41537	-0.00020421	-2.9642	-0.0014573	-3.3795	-0.0016615	491.6231448241288	23.175	0.35468	23.175	23.042	23.397	0					12	6	3	0	0	0	0.72297	1	309	309		21.78	7.6944	1	40827	+		24692	16967	20202	20225	27487	27487					0.134731580535572
KLRRQLEER	9	Unmodified	_KLRRQLEER_					0	0	0		nc|ENSG00000149599|Q9H1R2-4|DUSP15;nc|ENSG00000149599|Q9H1R2-2|DUSP15;ENSG00000149599|ENST00000339738|DUSP15	nc|ENSG00000149599|Q9H1R2-4|DUSP15	nc|ENSG00000149599|Q9H1R2-4|DUSP15	MULTI-SECPEP	OvCa99_classI_Rep5	1	410.2420654296875	3	409.914194	1226.72075	0.50796	0.00020822	-0.059488	-2.4385E-05	0.44847	0.00018383	409.91399251897496	28.962	0.54861	28.962	28.588	29.137	0					18	10	3	0	0	0	0.027462	1	961	961		21.686	0	1	104460			24693	5480	20203	20226	27488	27488					0.11646090677163556
KLRRRYHELK	10	Unmodified	_KLRRRYHELK_					0	0	0			REV__nc|ENSG00000133069|O75069-3|TMCC2	REV__nc|ENSG00000133069|O75069-3|TMCC2	MULTI-MSMS	OvCa9_classI_Rep3	3	467.2864074707031	3	466.952872	1397.83679	1.5916	0.00074322	-2.9691	-0.0013864	-1.3774	-0.00064319	466.9514863874782	62.714	2.1935	59.681	59.362	61.555	-3.0339					129	43	5	0	0	0	0.66944	4	2344	2318;2331;2344;2405		33.922	4.1738	1	504980	+		24694	19124	20204	20227	27489;27490;27491;27492	27491					0.15378034247873984
KLRSPVNL	8	Unmodified	_KLRSPVNL_					0	0	0		ENST00000582931.5_1_17:16836228-16875389:-|nuORF;nc|ENSG00000240505|O14836-3|TNFRSF13B;ENST00000581616.2_1_17:16844708-16875389:-|nuORF;nc|ENSG00000240505|O14836-2|TNFRSF13B;ENSG00000240505|ENST00000261652|TNFRSF13B	ENST00000582931.5_1_17:16836228-16875389:-|nuORF	ENST00000582931.5_1_17:16836228-16875389:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.79364013671875	2	463.792727	925.5709	-1.1937	-0.00055365	0.4259	0.00019753	-0.76784	-0.00035612	463.79306876032103	55.435	1.8299	52.14	51.341	53.171	-3.2944					91	35	4	0	0	0	0.64026	1	3482	3482		55.504	2.1528	1	2918300			24695	9341	20205	20228	27493	27493					0.1051377040537318
KLRTQGWYTI	10	Unmodified	_KLRTQGWYTI_					0	0	0			REV__ENSG00000011201|ENST00000262648|ANOS1	REV__ENSG00000011201|ENST00000262648|ANOS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	422.574462890625	3	422.571545	1264.69281	-0.45904	-0.00019398	-2.555	-0.0010797	-3.014	-0.0012737	422.57034265167334	37.529	0.27592	37.529	37.438	37.714	0					12	5	3	0	0	0	0.026881	1	2060	2060		30.569	16.326	1	261440	+		24696	16484	20206	20229	27494	27494					0.07104767697069292
KLRVDKAP	8	Unmodified	_KLRVDKAP_					0	0	0		ENSG00000137310|ENST00000376257|TCF19	ENSG00000137310|ENST00000376257|TCF19	ENSG00000137310|ENST00000376257|TCF19	MULTI-MSMS	OvCa9_classI_Rep2	2	463.7920837402344	2	463.792727	925.5709	-1.1345	-0.00052618	0.86769	0.00040243	-0.26683	-0.00012375	463.7931351732129	55.008	1.9913	52.194	51.125	53.116	-2.8139					104	39	4	0	0	0	0.65062	1	3840	3840		53.351	2.016	1	1215200			24697	4576	20207	20230	27495	27495					0.10513770405361811
KLRVGDRIVTI	11	Unmodified	_KLRVGDRIVTI_					0	0	0		nc|ENSG00000107186|O75970-5|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-2|MPDZ;ENSG00000107186|ENST00000319217|MPDZ;ENST00000539508.5_1_9:13106966-13133978:-|nuORF	nc|ENSG00000107186|O75970-5|MPDZ	nc|ENSG00000107186|O75970-5|MPDZ	MULTI-SECPEP	OvCa9_classI_Rep2	2	423.9213562011719	3	423.938228	1268.79285	0.26918	0.00011411	0.26988	0.00011441	0.53906	0.00022853	423.9382457549015	44.387	0.59702	41.677	41.502	42.099	-2.7097					16	11	2	0	0	0	0.026277	1	2503	2503		12.957	4.1582	1	32058			24698	2594	20208	20231	27496	27496					0.16921005030872038
KLRVGDRIVTI	11	Unmodified	_KLRVGDRIVTI_					0	0	0		nc|ENSG00000107186|O75970-5|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-2|MPDZ;ENSG00000107186|ENST00000319217|MPDZ;ENST00000539508.5_1_9:13106966-13133978:-|nuORF	nc|ENSG00000107186|O75970-5|MPDZ	nc|ENSG00000107186|O75970-5|MPDZ	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	423.938228	1268.79285	-1.1151	-0.00047274	0.76888	0.00032596	-0.34623	-0.00014678	423.93856779155425	44.743	0.50963	41.704	41.514	42.023	-3.0385	0.013396	0.00048918	NaN	12.957	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12118			24699	2594	20208	20231							0.16921005030872038
KLRYGQLP	8	Unmodified	_KLRYGQLP_					0	0	0			REV__nc|ENSG00000153707|P23468-2|PTPRD	REV__nc|ENSG00000153707|P23468-2|PTPRD	MULTI-SECPEP	OvCa9_classI_Rep4_	4	488.77166748046875	2	487.792727	973.5709	-0.70339	-0.00034311	0.52297	0.0002551	-0.18042	-8.801E-05	487.79282952126215	65.74	1.2158	62.255	61.987	63.202	-3.4854					45	24	3	0	0	0	0.028476	1	4714	4714		24.203	0	1	331500	+		24700	20345	20209	20232	27497	27497					0.08305770405377189
KLRYGQLP	8	Unmodified	_KLRYGQLP_					0	0	0			REV__nc|ENSG00000153707|P23468-2|PTPRD	REV__nc|ENSG00000153707|P23468-2|PTPRD	MULTI-MATCH	OvCa9_classI_Rep2	2		2	487.792727	973.5709	0.63346	0.000309	-0.46776	-0.00022817	0.1657	8.0829E-05	487.79232108101627	64.882	1.426	62.157	61.864	63.29	-2.7246	-0.048659	-0.00041619	NaN	38.806	53	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236200	+		24701	20345	20209	20232							0.08305770405377189
KLRYIASR	8	Unmodified	_KLRYIASR_					0	0	0			REV__ENSG00000113319|ENST00000265080|RASGRF2	REV__ENSG00000113319|ENST00000265080|RASGRF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.2969055175781	2	503.811451	1005.60835	0.041517	2.0917E-05	-1.4472	-0.0007291	-1.4057	-0.00070818	503.8107023591278	65.008	0.3558	65.008	64.875	65.231	0					12	8	2	0	0	0	0.028476	1	5952	5952		17.365	0	1	111910	+		24702	18145	20210	20233	27498	27498					0.10576861670972448
KLSAHTHTL	9	Unmodified	_KLSAHTHTL_					0	0	0		LAMB2|p.A1715Sfs*4|1|0.69|ENSG00000172037|chr3:49121550-49121551|-/T|frameshift_variant;ENSG00000172037|ENST00000305544|LAMB2;ENST00000469665.1_1_3:49160507-49161165:-|nuORF	LAMB2|p.A1715Sfs*4|1|0.69|ENSG00000172037|chr3:49121550-49121551|-/T|frameshift_variant	LAMB2|p.A1715Sfs*4|1|0.69|ENSG00000172037|chr3:49121550-49121551|-/T|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	504.2850646972656	2	504.285266	1006.55598	0.040331	2.0339E-05	-0.16212	-8.1753E-05	-0.12178	-6.1414E-05	504.28496274003044	32.478	0.78755	32.478	32.105	32.892	0					26	12	3	0	0	0	0.11471	1	1417	1417		93.195	10.89	1	367430			24703	7262	20211	20234	27499	27499					0.052962785373551924
KLSEADRREL	10	Unmodified	_KLSEADRREL_					0	0	0			REV__MOCS3|p.A404Ffs*15|1|0.29|ENSG00000124217|chr20:50960050-50960051|-/ATTC|frameshift_variant	REV__MOCS3|p.A404Ffs*15|1|0.29|ENSG00000124217|chr20:50960050-50960051|-/ATTC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	608.8381958007812	2	608.835851	1215.65715	1.2125	0.00073819	1.8784	0.0011436	3.0908	0.0018818	608.8368613491077	156.48	2.1073	156.48	156.04	158.15	0					128	41	5	0	0	0	0.59317	1	18373	18373		42.864	1.4377	1	3302900	+		24704	18676	20212	20235	27500	27500					0.05794685449427561
KLSEFENGGRA	11	Unmodified	_KLSEFENGGRA_					0	0	0		tr|A0A553SMG5|A0A553SMG5_NIACIDNAtopoisomerase4subunitAOS=NialliacirculansOX=1397GN=parCPE=3SV=1	tr|A0A553SMG5|A0A553SMG5_NIACIDNAtopoisomerase4subunitAOS=NialliacirculansOX=1397GN=parCPE=3SV=1	tr|A0A553SMG5|A0A553SMG5_NIACIDNAtopoisomerase4subunitAOS=NialliacirculansOX=1397GN=parCPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	403.235595703125	3	403.207043	1206.5993	0.088383	3.5637E-05	1.5453	0.00062308	1.6337	0.00065872	403.2074856716034	43.773	1.0059	43.773	43.478	44.484	0					49	22	4	0	0	0	0.025759	1	2906	2906		14.779	0	1	633930			24705	33830	20213	20236	27501	27501					0.00426423524004349
KLSELEAAL	9	Unmodified	_KLSELEAAL_					0	0	0		CON__H-INV:HIT000292931;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000405771.3_1_6:134618472-134619126:-|nuORF;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;CON__REFSEQ:XP_092267	CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8;CON__REFSEQ:XP_092267	ENSG00000170421|ENST00000692008|KRT8	MULTI-MSMS	OvCa9_classI_Rep2	2	487.280517578125	2	487.281857	972.549162	-0.17128	-8.3459E-05	-0.55791	-0.00027186	-0.72919	-0.00035532	487.2815643110269	94.239	2.596	93.14	92.644	95.24	-1.0995					171	51	6	0	0	0	0.043101	10	8445	8416;8422;8427;8433;8439;8445;8451;8457;8477;8502		124.08	16.369	1	3277500		+	24706	622;610;667	20214	20237	27502;27503;27504;27505;27506;27507;27508;27509;27510;27511	27507					0.061789208661252815
KLSELEAAL	9	Unmodified	_KLSELEAAL_					0	0	0		CON__H-INV:HIT000292931;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000405771.3_1_6:134618472-134619126:-|nuORF;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;CON__REFSEQ:XP_092267	CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8;CON__REFSEQ:XP_092267	ENSG00000170421|ENST00000692008|KRT8	MULTI-MSMS	OvCa9_classI_Rep3	3	487.2825622558594	2	487.281857	972.549162	-1.0485	-0.0005109	0.41711	0.00020325	-0.63137	-0.00030765	487.2819843698998	95.08	2.6649	93.185	92.561	95.226	-1.8956					196	52	7	0	0	0	0.0086488	12	6172	6167;6172;6178;6184;6190;6196;6202;6216;6233;6241;6253;6265		176.09	41.276	1	4110600		+	24707	622;610;667	20214	20237	27512;27513;27514;27515;27516;27517;27518;27519;27520;27521;27522;27523	27513					0.061789208661252815
KLSELEAAL	9	Unmodified	_KLSELEAAL_					0	0	0		CON__H-INV:HIT000292931;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENST00000405771.3_1_6:134618472-134619126:-|nuORF;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;CON__REFSEQ:XP_092267	CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8;CON__REFSEQ:XP_092267	ENSG00000170421|ENST00000692008|KRT8	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.2830505371094	2	487.281857	972.549162	-0.75313	-0.00036699	0.06037	2.9417E-05	-0.69276	-0.00033757	487.28181617652046	95.712	2.666	93.287	92.554	95.22	-2.4256					181	52	5	0	0	0	0.012051	6	8432	8409;8420;8432;8444;8469;8494		162.25	41.631	1	3865200		+	24708	622;610;667	20214	20237	27524;27525;27526;27527;27528;27529	27526					0.061789208661252815
KLSETKSVL	9	Unmodified	_KLSETKSVL_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	OvCa99_classI_Rep5	1	502.8045654296875	2	502.802957	1003.59136	-0.49475	-0.00024876	0.86818	0.00043652	0.37344	0.00018777	502.80327234460293	54.53	0.85417	54.53	54.253	55.107	0					47	19	3	0	0	0	0.35694	1	4448	4448		56.434	8.4743	1	2055900			24709	7566	20215	20238	27530	27530					0.08970896274524875
KLSEVVIDL	9	Unmodified	_KLSEVVIDL_					0	0	0		nc|ENSG00000138769|Q92772|CDKL2;ENSG00000138769|ENST00000307465|CDKL2	nc|ENSG00000138769|Q92772|CDKL2	nc|ENSG00000138769|Q92772|CDKL2	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.81353759765625	2	508.305332	1014.59611	0.033387	1.6971E-05	-0.47582	-0.00024186	-0.44243	-0.00022489	508.30640264937637	96.576	1.1814	95.617	95.381	96.562	-0.95857					82	23	5	0	0	0	0.027072	1	8697	8697		90.37	5.4543	1	967280			24710	4727	20216	20239	27531	27531					0.08939780417290422
KLSEVVIDL	9	Unmodified	_KLSEVVIDL_					0	0	0		nc|ENSG00000138769|Q92772|CDKL2;ENSG00000138769|ENST00000307465|CDKL2	nc|ENSG00000138769|Q92772|CDKL2	nc|ENSG00000138769|Q92772|CDKL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.8143615722656	2	508.305332	1014.59611	0.14635	7.4388E-05	0.85885	0.00043656	1.0052	0.00051095	508.3065913818053	97.823	1.5805	95.444	95.317	96.898	-2.3786					55	30	2	0	0	0	0.027137	1	8667	8667		90.37	26.163	1	1388600			24711	4727	20216	20239	27532	27532					0.08939780417290422
KLSEYEMSI	9	Unmodified	_KLSEYEMSI_					0	0	0		nc|ENSG00000138138|Q8NBU5-2|ATAD1;ENSG00000138138|ENST00000680024|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	nc|ENSG00000138138|Q8NBU5-2|ATAD1	MULTI-MSMS	OvCa99_classI_Rep5	1	550.2721557617188	2	550.270632	1098.52671	2.5598	0.0014086	-0.51673	-0.00028434	2.0431	0.0011243	550.2700191077813	88.732	0.53631	88.732	88.467	89.004	0					25	12	3	0	0	0	0.21231	1	9451	9451		74.255	19.479	1	790610			24712	4662	20217	20240	27533	27533					-0.018610465937854315
KLSFNEKKL	9	Unmodified	_KLSFNEKKL_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8296508789062	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.48324	1	11708	11708		44.117	1.7207	1	308210	+		24713	29026	20218	20241	27534	27534					0.10094577919812764
KLSFQYLPNI	10	Unmodified	_KLSFQYLPNI_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-SECPEP	OvCa9_classI_Rep4_	4	408.7315673828125	3	408.23253	1221.67576	0.76309	0.00031152	3.1679	0.0012933	3.931	0.0016048	408.23419569251996	51.532	1.5599	48.358	47.62	49.18	-3.1734					80	30	4	0	0	0	0.027088	1	2969	2969		14.086	0	1	354590	+		24714	17764	20219	20242	27535	27535					0.07378847091285934
KLSGLLPSA	9	Unmodified	_KLSGLLPSA_					0	0	0		ENSG00000154265|ENST00000392676|ABCA5;ENST00000586995.5_3_17:67249715-67270153:-|nuORF;nc|ENSG00000154265|Q8WWZ7-3|ABCA5	ENSG00000154265|ENST00000392676|ABCA5	ENSG00000154265|ENST00000392676|ABCA5	MULTI-MSMS	OvCa9_classI_Rep3	3	443.27191162109375	2	443.273835	884.533118	-1.4905	-0.00066069	-1.4677	-0.00065059	-2.9582	-0.0013113	443.2730906196648	139.11	1.2789	138.05	137.68	138.96	-1.0595					59	25	3	0	0	0	0.69123	1	11414	11414		20.947	1.8434	1	174030			24715	5726	20220	20243	27536	27536					0.08623259419880469
KLSGLLPSA	9	Unmodified	_KLSGLLPSA_					0	0	0		ENSG00000154265|ENST00000392676|ABCA5;ENST00000586995.5_3_17:67249715-67270153:-|nuORF;nc|ENSG00000154265|Q8WWZ7-3|ABCA5	ENSG00000154265|ENST00000392676|ABCA5	ENSG00000154265|ENST00000392676|ABCA5	MULTI-MSMS	OvCa9_classI_Rep4_	4	443.2738952636719	2	443.273835	884.533118	1.1525	0.00051086	-4.3689	-0.0019366	-3.2165	-0.0014258	443.27180064343105	139.52	2.0991	138.02	137.22	139.32	-1.4952					91	40	3	0	0	0	0.7044	1	13672	13672		16.473	0	1	858700			24716	5726	20220	20243	27537	27537					0.08623259419880469
KLSGYNLNAQL	11	Unmodified	_KLSGYNLNAQL_					0	0	0			REV__ENST00000602708.1_1_9:19230809-19276502:+|nuORF	REV__ENST00000602708.1_1_9:19230809-19276502:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	610.8377075195312	2	610.83532	1219.65609	-0.47975	-0.00029305	-0.12563	-7.6739E-05	-0.60538	-0.00036979	610.8351201775422	65.484	0.6368	65.484	65.231	65.867	0					35	15	3	0	0	0	0.10496	1	6014	6014		96.034	18.716	1	3313900	+		24717	16286	20221	20244	27538	27538					0.05504471080530493
KLSGYNLNAQL	11	Unmodified	_KLSGYNLNAQL_					0	0	0			REV__ENST00000602708.1_1_9:19230809-19276502:+|nuORF	REV__ENST00000602708.1_1_9:19230809-19276502:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	610.83532	1219.65609	-0.47975	-0.00029305	-0.12563	-7.6739E-05	-0.60538	-0.00036979	610.8351201775422	65.484	0.6368	65.484	65.231	65.867	0	0.17026	-0.00062667	NaN	96.034	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3313900	+		24718	16286	20221	20244							0.05504471080530493
KLSGYNLNAQL	11	Unmodified	_KLSGYNLNAQL_					0	0	0			REV__ENST00000602708.1_1_9:19230809-19276502:+|nuORF	REV__ENST00000602708.1_1_9:19230809-19276502:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	610.83532	1219.65609	-1.6104	-0.00098369	1.2849	0.00078487	-0.32547	-0.00019881	610.8359858929796	67.868	1.185	65.207	64.892	66.077	-2.661	-0.10695	0.0010966	NaN	96.034	56	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188820	+		24719	16286	20221	20244							0.05504471080530493
KLSGYNLNAQL	11	Unmodified	_KLSGYNLNAQL_					0	0	0			REV__ENST00000602708.1_1_9:19230809-19276502:+|nuORF	REV__ENST00000602708.1_1_9:19230809-19276502:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	610.83532	1219.65609	0.43825	0.0002677	-0.90512	-0.00055288	-0.46686	-0.00028518	610.8347912087205	68.741	0.98534	65.25	65.014	66	-3.4902	-0.063313	-0.0015789	NaN	96.034	55	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244770	+		24720	16286	20221	20244							0.05504471080530493
KLSILPFQL	9	Unmodified	_KLSILPFQL_					0	0	0		tr|A0A553SNB0|A0A553SNB0_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_24135PE=4SV=1	tr|A0A553SNB0|A0A553SNB0_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_24135PE=4SV=1	tr|A0A553SNB0|A0A553SNB0_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_24135PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	529.8336791992188	2	529.83406	1057.65357	0.11225	5.9476E-05	-0.066944	-3.5469E-05	0.04531	2.4007E-05	529.8337068183537	130.71	1.0441	130.48	130.26	131.3	-0.22697					31	20	3	0	0	0	0.53483	2	12861	12861;12875		39.253	2.3082	1	147740			24721	33913	20222	20245	27539;27540	27539					0.12704667413504467
KLSLEGIVVQR	11	Unmodified	_KLSLEGIVVQR_					0	0	0		ENSG00000188342|ENST00000340473|GTF2F2	ENSG00000188342|ENST00000340473|GTF2F2	ENSG00000188342|ENST00000340473|GTF2F2	MULTI-MSMS	OvCa9_classI_Rep2	2	414.59051513671875	3	414.590717	1240.75032	-0.3176	-0.00013168	1.5338	0.00063588	1.2162	0.00050421	414.59131292590723	33.401	1.2917	30.691	30.42	31.712	-2.7097					57	25	3	0	0	0	0.65267	1	1182	1182		39.873	5.9515	1	132160			24722	8468	20223	20246	27541	27541					0.13957609902649892
KLSLVAAMLLL	11	Unmodified	_KLSLVAAMLLL_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MSMS	OvCa99_classI_Rep5	1	586.3847045898438	2	586.377778	1170.741	0.27539	0.00016148	-0.099593	-5.8399E-05	0.17579	0.00010308	586.377547850614	161.87	1.2169	161.87	161.26	162.48	0					63	23	3	0	0	0	0.68391	1	18945	18945		35.178	1.0057	1	183130			24723	1134	20224	20247	27542	27542					0.1624612529276419
KLSNIADRVIL	11	Unmodified	_KLSNIADRVIL_					0	0	0		ENSG00000183665|ENST00000328599|TRMT12	ENSG00000183665|ENST00000328599|TRMT12	ENSG00000183665|ENST00000328599|TRMT12	MULTI-MSMS	OvCa9_classI_Rep2	2	414.5903015136719	3	414.590717	1240.75032	0.002839	1.177E-06	1.5818	0.00065579	1.5846	0.00065696	414.5912032100085	57.072	1.3406	54.28	53.832	55.173	-2.792					73	26	3	0	0	0	0.69589	1	4042	4042		31.068	2.4914	1	128050			24724	8094	20225	20248	27543	27543					0.13957609902649892
KLSNLWLKEI	10	Unmodified	_KLSNLWLKEI_					0	0	0		ENST00000542921.5_1_10:65024475-65028460:-|nuORF	ENST00000542921.5_1_10:65024475-65028460:-|nuORF	ENST00000542921.5_1_10:65024475-65028460:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	621.8436889648438	2	622.374081	1242.73361	-0.68196	-0.00042444	-1.2017	-0.00074793	-1.8837	-0.0011724	622.373637709617	40.415	0.47372	37.461	37.315	37.789	-2.9541					9	8	2	0	0	0	0.026856	1	1767	1767		36.447	0	1	11808			24725	13483	20226	20249	27544	27544					0.12195109016715833
KLSPTKSRHG	10	Unmodified	_KLSPTKSRHG_					0	0	0			REV__AluJr_dup42395|chrX:1390014-1390281:-|1.313227240622846|0.0131707750731335|6.64|396.0|2|1|sense	REV__AluJr_dup42395|chrX:1390014-1390281:-|1.313227240622846|0.0131707750731335|6.64|396.0|2|1|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	556.7896728515625	2	555.822547	1109.63054	-0.23089	-0.00012834	-4.0118	-0.0022298	-4.2426	-0.0023582	555.8204930882669	67.597	1.1351	64.936	64.545	65.68	-2.661					32	22	2	0	0	0	0.026891	1	5332	5332		18.262	0	1	26284	+		24726	15599	20227	20250	27545	27545					0.08011041348754588
KLSPYVHYT	9	Unmodified	_KLSPYVHYT_					0	0	0		nc|ENSG00000198910|P32004-3|L1CAM;nc|ENSG00000198910|P32004-2|L1CAM;ENSG00000198910|ENST00000370060|L1CAM	nc|ENSG00000198910|P32004-3|L1CAM	nc|ENSG00000198910|P32004-3|L1CAM	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.2691040039062	2	554.295299	1106.57605	0.9585	0.00053129	-1.0112	-0.00056048	-0.05266	-2.9189E-05	554.294499230509	132.42	0.71063	132.42	132.13	132.84	0					31	14	3	0	0	0	0.027462	1	15359	15359		37.812	5.8567	1	242410			24727	8905	20228	20251	27546	27546					0.02702029477313772
KLSQILKS	8	Unmodified	_KLSQILKS_					0	0	0		ENST00000445000.2_1_6:2988718-2988880:+|nuORF	ENST00000445000.2_1_6:2988718-2988880:+|nuORF	ENST00000445000.2_1_6:2988718-2988880:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.7764892578125	2	458.794935	915.575317	-1.1986	-0.0005499	0.46732	0.0002144	-0.73126	-0.0003355	458.7948021114451	45.289	0.72983	42.25	42.075	42.805	-3.0385					21	13	3	0	0	0	0.028476	1	2356	2356		19.104	0	1	46337			24728	11968	20229	20252	27547	27547					0.11415234828280063
KLSQILKS	8	Unmodified	_KLSQILKS_					0	0	0		ENST00000445000.2_1_6:2988718-2988880:+|nuORF	ENST00000445000.2_1_6:2988718-2988880:+|nuORF	ENST00000445000.2_1_6:2988718-2988880:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	458.794935	915.575317	0.57185	0.00026236	-1.1049	-0.00050693	-0.53307	-0.00024457	458.7943344278433	45.096	0.39815	42.386	42.248	42.647	-2.7097	0.067758	-0.00058474	NaN	19.104	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16066			24729	11968	20229	20252							0.11415234828280063
KLSRIYFI	8	Unmodified	_KLSRIYFI_					0	0	0			REV__ENST00000260443.8_1_15:55474252-55474318:-|nuORF	REV__ENST00000260443.8_1_15:55474252-55474318:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.301513671875	2	520.318577	1038.6226	1.7606	0.0009161	-1.6943	-0.00088157	0.066358	3.4527E-05	520.3177817173242	110.6	0.2673	110.6	110.49	110.76	0					7	5	2	0	0	0	0.028476	1	12562	12562		44.117	9.9443	1	110010	+		24730	23927	20230	20253	27548	27548					0.10483514099269087
KLSRPRWNYFF	11	Unmodified	_KLSRPRWNYFF_					0	0	0			REV__nc|ENSG00000101180|Q9Y5N1-5|HRH3	REV__nc|ENSG00000101180|Q9Y5N1-5|HRH3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.8097229003906	3	505.273611	1512.799	-0.66727	-0.00033715	-3.1377	-0.0015854	-3.8049	-0.0019225	505.27177064137123	74.468	1.4346	71.237	70.723	72.157	-3.2308					79	29	4	0	0	0	0.026321	1	5787	5787		14.694	5.0475	1	415930	+		24731	28770	20231	20254	27549	27549					0.06311523262388619
KLSSLIIL	8	Unmodified	_KLSSLIIL_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1;ENST00000419794.1_1_9:34318953-34319253:+|nuORF	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	OvCa99_classI_Rep5	1	443.8029479980469	2	443.802229	885.589904	2.6382	0.0011708	-0.84144	-0.00037343	1.7968	0.00079741	443.8017351433862	116.93	0.68323	116.93	116.68	117.37	0					26	14	2	0	0	0	0.42208	1	13409	13409		85.359	0	1	1325700			24732	5448	20232	20255	27550	27550					0.14253306976422664
KLSSLIILM	9	Unmodified	_KLSSLIILM_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1;ENST00000419794.1_1_9:34318953-34319253:+|nuORF	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	OvCa99_classI_Rep5	1	509.323486328125	2	509.322471	1016.63039	1.6932	0.00086236	-0.46413	-0.00023639	1.229	0.00062597	509.3222483273032	129.75	3.5873	129.75	129.45	133.04	0					127	75	2	0	0	0	0.083631	2	15039	15039;15113		101.6	24.754	1	9824000			24733	5448	20233	20256	27551;27552	27551					0.12273905304550681
KLSSLIILM	9	Oxidation (M)	_KLSSLIILM(Oxidation (M))_		KLSSLIILM(1)		KLSSLIILM(100)	0	0	1		ENSG00000149257|ENST00000358171|SERPINH1;ENST00000419794.1_1_9:34318953-34319253:+|nuORF	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3197631835938	2	517.319928	1032.6253	0.83876	0.00043391	-1.0918	-0.0005648	-0.25301	-0.00013089	517.3191831149613	112.7	1.9244	112.58	112.28	114.2	-0.12174					94	38	4	0	0	0	0.083631	1	10672	10672		101.6	19.296	1	430350			24734	5448	20233	20257	27553	27553		180			0.1102960144194185
KLSSLIILM	9	Oxidation (M)	_KLSSLIILM(Oxidation (M))_		KLSSLIILM(1)		KLSSLIILM(90)	0	0	1		ENSG00000149257|ENST00000358171|SERPINH1;ENST00000419794.1_1_9:34318953-34319253:+|nuORF	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	OvCa9_classI_Rep3	3	517.3191528320312	2	517.319928	1032.6253	1.1782	0.00060953	-1.6268	-0.00084156	-0.44851	-0.00023203	517.3188801990356	113.66	2.2198	112.59	112.25	114.47	-1.0753					98	43	4	0	0	0	0.12515	2	8360	8360;8370		90.37	16.115	1	525200			24735	5448	20233	20257	27554;27555	27554		180			0.1102960144194185
KLSSLIILM	9	Oxidation (M)	_KLSSLIILM(Oxidation (M))_		KLSSLIILM(1)		KLSSLIILM(85)	0	0	1		ENSG00000149257|ENST00000358171|SERPINH1;ENST00000419794.1_1_9:34318953-34319253:+|nuORF	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.3196411132812	2	517.319928	1032.6253	0.35346	0.00018285	-0.54122	-0.00027998	-0.18776	-9.7133E-05	517.3194451017831	114.08	1.883	112.63	112.34	114.22	-1.4461					85	36	4	0	0	0	0.14998	3	10612	10578;10587;10612		84.916	18.741	1	560350			24736	5448	20233	20257	27556;27557;27558	27558		180			0.1102960144194185
KLSVLALVV	9	Unmodified	_KLSVLALVV_					0	0	0		ENSG00000215547|ENST00000400552|DEFB115	ENSG00000215547|ENST00000400552|DEFB115	ENSG00000215547|ENST00000400552|DEFB115	MULTI-SECPEP	OvCa9_classI_Rep3	3	472.27728271484375	2	471.323328	940.632104	-0.60293	-0.00028418	0.2154	0.00010152	-0.38753	-0.00018265	471.32343134389566	85.557	0.60143	83.337	83.084	83.686	-2.2204					14	11	2	0	0	0	0.027447	1	5052	5052		31.53	0	1	19921			24737	9209	20234	20258	27559	27559					0.15941282384790156
KLSVLALVVL	10	Unmodified	_KLSVLALVVL_					0	0	0		ENSG00000215547|ENST00000400552|DEFB115	ENSG00000215547|ENST00000400552|DEFB115	ENSG00000215547|ENST00000400552|DEFB115	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.8182983398438	2	527.86536	1053.71617	2.5077	0.0013237	1.6219	0.00085615	4.1296	0.0021798	527.8650077467353	100.65	0.45125	100.65	100.53	100.98	0					17	10	2	0	0	0	0.026681	1	11194	11194		44.377	22.417	1	244090			24738	9209	20235	20259	27560	27560					0.19145813481713958
KLSVNKLR	8	Unmodified	_KLSVNKLR_					0	0	0			REV__nc|ENSG00000103021|Q9H0I3-2|CFAP263	REV__nc|ENSG00000103021|Q9H0I3-2|CFAP263	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.7821044921875	2	479.313826	956.613099	1.062	0.00050904	-1.9257	-0.00092301	-0.86366	-0.00041397	479.31270421567046	36.263	0.40025	33.414	33.288	33.689	-2.849					11	7	2	0	0	0	0.028476	1	1250	1250		18.324	1.8513	1	11942	+		24739	17588	20236	20260	27561	27561					0.13305745813750036
KLTDYYIN	8	Unmodified	_KLTDYYIN_					0	0	0			REV__tr|A0A7D7AAS9|A0A7D7AAS9_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12615PE=4SV=1	REV__tr|A0A7D7AAS9|A0A7D7AAS9_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12615PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.2669677734375	2	515.266207	1028.51786	2.5547	0.0013164	-0.51661	-0.00026619	2.0381	0.0010502	515.2657449264412	107.78	0.9322	107.78	107.48	108.41	0					52	21	4	0	0	0	0.57734	1	12156	12156		68.787	2.3575	1	4057300	+		24740	32670	20237	20261	27562	27562					0.004743478320506256
KLTDYYIN	8	Unmodified	_KLTDYYIN_					0	0	0			REV__tr|A0A7D7AAS9|A0A7D7AAS9_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12615PE=4SV=1	REV__tr|A0A7D7AAS9|A0A7D7AAS9_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12615PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	515.266207	1028.51786	2.5547	0.0013164	-0.51661	-0.00026619	2.0381	0.0010502	515.2657449264412	107.78	0.9322	107.78	107.48	108.41	0	0	0	NaN	68.787	52	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4057300	+		24741	32670	20237	20261							0.004743478320506256
KLTEECDLLI	10	Carbamidomethyl (C)	_KLTEEC(Carbamidomethyl (C))DLLI_	KLTEEC(1)DLLI		KLTEEC(69)DLLI		0	1	0		ENSG00000101871|ENST00000317552|MID1;nc|ENSG00000101871|O15344-2|MID1;MID1-SPAG17|2|fusion;MID1-SPAG17|1|fusion;MID1-SPAG17|3|fusion	ENSG00000101871|ENST00000317552|MID1	ENSG00000101871|ENST00000317552|MID1	MULTI-MSMS	OvCa99_classI_Rep5	1	411.8844909667969	3	411.88469	1232.63224	0.97668	0.00040228	-3.5422	-0.001459	-2.5655	-0.0010567	411.8831057702673	72.916	0.75473	72.916	72.645	73.4	0					40	18	4	0	0	0	0.39718	1	7136	7136		68.846	17.318	1	1697500			24742	2204	20238	20262	27563	27563	19				0.025228695318219252
KLTEECDLLI	10	Carbamidomethyl (C)	_KLTEEC(Carbamidomethyl (C))DLLI_					0	1	0		ENSG00000101871|ENST00000317552|MID1;nc|ENSG00000101871|O15344-2|MID1;MID1-SPAG17|2|fusion;MID1-SPAG17|1|fusion;MID1-SPAG17|3|fusion	ENSG00000101871|ENST00000317552|MID1	ENSG00000101871|ENST00000317552|MID1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	411.88469	1232.63224	0.34202	0.00014087	-2.7503	-0.0011328	-2.4083	-0.00099195	411.88329299427	74.903	0.97882	72.932	72.692	73.671	-1.9711	0.023704	0.0006287	NaN	68.846	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39233			24743	2204	20238	20262			19				0.025228695318219252
KLTEECDLLI	10	Carbamidomethyl (C)	_KLTEEC(Carbamidomethyl (C))DLLI_					0	1	0		ENSG00000101871|ENST00000317552|MID1;nc|ENSG00000101871|O15344-2|MID1;MID1-SPAG17|2|fusion;MID1-SPAG17|1|fusion;MID1-SPAG17|3|fusion	ENSG00000101871|ENST00000317552|MID1	ENSG00000101871|ENST00000317552|MID1	MULTI-MATCH	OvCa9_classI_Rep3	3		3	411.88469	1232.63224	0.33081	0.00013626	-2.9773	-0.0012263	-2.6465	-0.00109	411.8833243764289	75.183	1.1426	72.772	72.488	73.631	-2.4106	-0.13652	0.00034828	NaN	68.846	40	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36428			24744	2204	20238	20262			19				0.025228695318219252
KLTEECDLLI	10	Carbamidomethyl (C)	_KLTEEC(Carbamidomethyl (C))DLLI_					0	1	0		ENSG00000101871|ENST00000317552|MID1;nc|ENSG00000101871|O15344-2|MID1;MID1-SPAG17|2|fusion;MID1-SPAG17|1|fusion;MID1-SPAG17|3|fusion	ENSG00000101871|ENST00000317552|MID1	ENSG00000101871|ENST00000317552|MID1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	411.88469	1232.63224	0.62987	0.00025943	-4.0683	-0.0016757	-3.4384	-0.0014162	411.8829733487079	75.952	0.52806	73.013	72.79	73.318	-2.9389	0.10494	-0.00099983	NaN	68.846	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55542			24745	2204	20238	20262			19				0.025228695318219252
KLTELLVKA	9	Unmodified	_KLTELLVKA_					0	0	0		PSAP-SGPL1|1|fusion;ENSG00000166224|ENST00000373202|SGPL1	PSAP-SGPL1|1|fusion	PSAP-SGPL1|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	507.8327941894531	2	507.831517	1013.64848	2.6078	0.0013243	-0.26898	-0.0001366	2.3388	0.0011877	507.8312834897917	75.371	0.63576	75.371	75.087	75.723	0					40	15	4	0	0	0	0.13011	1	7496	7496		89.029	39.493	1	1705700			24746	6653	20239	20263	27564	27564					0.1422036355089631
KLTELQLRA	9	Unmodified	_KLTELQLRA_					0	0	0		nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000158604|ENST00000457408|TMED4;nc|ENSG00000158604|Q7Z7H5-3|TMED4	nc|ENSG00000158604|Q7Z7H5-2|TMED4	nc|ENSG00000158604|Q7Z7H5-2|TMED4	MULTI-MSMS	OvCa99_classI_Rep5	1	536.3294067382812	2	536.329673	1070.64479	-0.96821	-0.00051928	-0.035768	-1.9184E-05	-1.004	-0.00053846	536.3296972347545	34.322	1.6874	34.322	34.065	35.753	0					89	35	5	0	0	0	0.045281	2	1654	1654;1698		122.18	10.582	1	13293000			24747	5963	20240	20264	27565;27566	27565					0.11229693777045213
KLTGFAIRLV	10	Unmodified	_KLTGFAIRLV_					0	0	0			REV__ENST00000357258.8_2_3:114519980-114693249:-|nuORF	REV__ENST00000357258.8_2_3:114519980-114693249:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	559.3587646484375	2	559.358234	1116.70191	-0.59711	-0.000334	0.41046	0.0002296	-0.18665	-0.00010441	559.3583649114603	98.616	1.7053	96.931	96.543	98.248	-1.685					85	32	4	0	0	0	0.47142	1	6607	6607		58.23	1.5089	1	574930	+		24748	24782	20241	20265	27567	27567					0.14823161053391232
KLTGGLGVDV	10	Unmodified	_KLTGGLGVDV_					0	0	0		tr|A0A7D6ZXU1|A0A7D6ZXU1_9CLOT2,3-butanedioldehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23290PE=3SV=1	tr|A0A7D6ZXU1|A0A7D6ZXU1_9CLOT2,3-butanedioldehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23290PE=3SV=1	tr|A0A7D6ZXU1|A0A7D6ZXU1_9CLOT2,3-butanedioldehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23290PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	480.78228759765625	2	479.782025	957.549496	-0.87292	-0.00041881	1.0937	0.00052474	0.22078	0.00010593	479.78219952842187	47.89	0.79438	45.18	44.935	45.729	-2.7097					27	15	3	0	0	0	0.026681	1	2993	2993		52.937	17.318	1	74390			24749	35891	20242	20266	27568	27568					0.0690234058599799
KLTGIKHEL	9	Unmodified	_KLTGIKHEL_					0	0	0		ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	OvCa99_classI_Rep5	1	519.8190307617188	2	519.818941	1037.62333	-1.0415	-0.00054137	0.67501	0.00035088	-0.36645	-0.00019049	519.8191571895128	42.393	1.2008	42.393	42.111	43.312	0					57	27	4	0	0	0	0.19758	1	2717	2717		76.774	5.4784	1	2588200			24750	7317	20243	20267	27569	27569					0.10602308748320866
KLTIEFSL	8	Unmodified	_KLTIEFSL_					0	0	0			REV__ENST00000465804.5_1_3:149237183-149237372:-|nuORF	REV__ENST00000465804.5_1_3:149237183-149237372:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.7816162109375	2	475.781493	949.548434	0.62521	0.00029746	-0.77539	-0.00036891	-0.15018	-7.1452E-05	475.7808721778796	115.71	2.3885	114.32	113.87	116.26	-1.3977					115	46	4	0	0	0	0.66057	1	10822	10822		51.335	3.4199	1	352090	+		24751	26178	20244	20268	27570	27570					0.07164126217082867
KLTIMYDKPL	10	Unmodified	_KLTIMYDKPL_					0	0	0			REV__nc|ENSG00000049130|P21583-3|KITLG	REV__nc|ENSG00000049130|P21583-3|KITLG	MULTI-MSMS	OvCa9_classI_Rep2	2	611.3506469726562	2	611.349217	1220.68388	0.023819	1.4562E-05	3.0503	0.0018648	3.0741	0.0018794	611.3510154511714	125.27	1.2863	125.03	124.66	125.95	-0.2359					68	25	4	0	0	0	0.66721	1	12191	12191		34.173	0.25091	1	393690	+		24752	16674	20245	20269	27571	27571					0.08236658016380716
KLTKLKKAT	9	Unmodified	_KLTKLKKAT_					0	0	0			REV__L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|15|1|sense	REV__L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|15|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.8282470703125	2	515.852784	1029.69102	2.9889	0.0015418	-2.4378	-0.0012576	0.55108	0.00028427	516.3511050504776	134.34	0.14861	132.81	132.69	132.83	-1.5257					4	2	2	0	0	0	0.027462	1	12971	12971		10.265	1.4429	1	10107	+		24753	28509	20246	20270	27572	27572					0.17735758679123137
KLTKNPNLE	9	Unmodified	_KLTKNPNLE_					0	0	0			REV__tr|A0A7D6ZRE2|A0A7D6ZRE2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12335PE=4SV=1	REV__tr|A0A7D6ZRE2|A0A7D6ZRE2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12335PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	529.3048706054688	2	528.806031	1055.59751	-1.2413	-0.00065642	-1.9712	-0.0010424	-3.2125	-0.0016988	529.3059963064875	103.84	3.275	103.27	102.83	106.11	-0.57639					87	65	2	0	0	0	0.48047	1	9605	9605		44.377	2.9506	1	765080	+		24754	32156	20247	20271	27573	27573					0.07193414506014051
KLTKRGLGAP	10	Unmodified	_KLTKRGLGAP_					0	0	0		TNRC18|p.A1783G|1|0.12|ENSG00000182095|chr7:5351941-5351941|G/C|missense_variant	TNRC18|p.A1783G|1|0.12|ENSG00000182095|chr7:5351941-5351941|G/C|missense_variant	TNRC18|p.A1783G|1|0.12|ENSG00000182095|chr7:5351941-5351941|G/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2696533203125	2	520.832383	1039.65021	-0.7164	-0.00037312	0.9463	0.00049286	0.2299	0.00011974	520.8328023639294	71.474	0.56282	71.474	71.23	71.792	0					25	13	2	0	0	0	0.026915	1	6943	6943		14.865	0	1	943010			24755	32972	20248	20272	27574	27574					0.13197417359515384
KLTLTKEVTHK	11	Unmodified	_KLTLTKEVTHK_					0	0	0		ENST00000583108.5_1_17:65734947-65735019:+|nuORF	ENST00000583108.5_1_17:65734947-65735019:+|nuORF	ENST00000583108.5_1_17:65734947-65735019:+|nuORF	MSMS	OvCa99_classI_Rep5	1	649.3956909179688	2	649.395544	1296.77654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.13	1	126.13	125.63	126.63	0								0	0	0	0.19371	1	14582	14582		36.318	3.5671	1				24756	14009	20249	20273	27575	27575					0.14001879074135104
KLTQNKLILK	10	Unmodified	_KLTQNKLILK_					0	0	0		ENST00000510676.6_2_5:71616224-71630887:+|nuORF;ENSG00000049883|ENST00000380639|PTCD2	ENST00000510676.6_2_5:71616224-71630887:+|nuORF	ENST00000510676.6_2_5:71616224-71630887:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	599.3648681640625	2	599.897723	1197.78089	1.8148	0.0010887	-3.6341	-0.0021801	-1.8193	-0.0010914	600.3968345960654	126.93	0.31354	126.93	126.83	127.14	0					9	6	2	0	0	0	0.026752	1	14711	14711		44.117	6.9577	1	38806			24757	1175	20250	20274	27576	27576					0.18991388287713562
KLTREILLQQ	10	Unmodified	_KLTREILLQQ_					0	0	0			REV__nc|ENSG00000174527|Q8N1T3-3|MYO1H	REV__nc|ENSG00000174527|Q8N1T3-3|MYO1H	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.5875244140625	3	414.590717	1240.75032	0.16709	6.9273E-05	0.97296	0.00040338	1.1401	0.00047265	414.5910419987451	22.515	1.3412	21.121	20.671	22.012	-1.3935					97	37	4	0	0	0	0.73938	1	332	332		26.063	3.4837	1	89288	+		24758	21840	20251	20275	27577	27577					0.1395760990267263
KLTRRVTLDP	10	Unmodified	_KLTRRVTLDP_					0	0	0		nc|ENSG00000007047|Q96L34-2|MARK4	nc|ENSG00000007047|Q96L34-2|MARK4	nc|ENSG00000007047|Q96L34-2|MARK4	MULTI-SECPEP	OvCa9_classI_Rep2	2	600.8501586914062	2	599.866954	1197.71936	-0.4993	-0.00029951	0.29994	0.00017992	-0.19936	-0.00011959	599.867069835656	83.08	1.8883	81.481	80.958	82.846	-1.5989					90	37	4	0	0	0	0.026653	1	7060	7060		49.536	15.614	1	463340			24759	14860	20252	20276	27578	27578					0.12840456588423876
KLTRRVTLDP	10	Unmodified	_KLTRRVTLDP_					0	0	0		nc|ENSG00000007047|Q96L34-2|MARK4	nc|ENSG00000007047|Q96L34-2|MARK4	nc|ENSG00000007047|Q96L34-2|MARK4	MULTI-MATCH	OvCa99_classI_Rep5	1		2	599.866954	1197.71936	1.4069	0.00084394	1.6465	0.00098771	3.0534	0.0018316	599.8673335196419	81.694	0.48796	81.694	81.288	81.776	0	0.003214	0.0030254	NaN	33.922	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	252720			24760	14860	20252	20276							0.12840456588423876
KLTRRVTLDP	10	Unmodified	_KLTRRVTLDP_					0	0	0		nc|ENSG00000007047|Q96L34-2|MARK4	nc|ENSG00000007047|Q96L34-2|MARK4	nc|ENSG00000007047|Q96L34-2|MARK4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	599.866954	1197.71936	0.76675	0.00045995	-1.3701	-0.00082187	-0.60334	-0.00036192	599.866156091837	84.118	1.7282	81.858	81.566	83.295	-2.261	0.16635	-0.00059375	NaN	33.922	93	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	638130			24761	14860	20252	20276							0.12840456588423876
KLTSNLYKEV	10	Unmodified	_KLTSNLYKEV_					0	0	0			REV__ENSG00000112249|ENST00000369162|ASCC3	REV__ENSG00000112249|ENST00000369162|ASCC3	MULTI-SECPEP	OvCa99_classI_Rep5	1	597.2974853515625	2	597.840071	1193.66559	1.3177	0.00078775	3.9282	0.0023484	5.2459	0.0031362	597.8421970159941	131.31	0.61201	131.31	131.06	131.67	0					30	12	3	0	0	0	0.026826	1	15289	15289		44.377	11.565	1	383400	+		24762	18089	20253	20277	27579	27579					0.07650239366034839
KLTSTKMKPF	10	Oxidation (M)	_KLTSTKM(Oxidation (M))KPF_		KLTSTKM(1)KPF		KLTSTKM(55)KPF	0	0	1			REV__ENST00000423403.1_1_1:61195330-61291150:-|nuORF	REV__ENST00000423403.1_1_1:61195330-61291150:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	598.83740234375	2	598.839017	1195.66348	-0.083432	-4.9962E-05	-1.096	-0.00065631	-1.1794	-0.00070627	598.8381161590047	81.237	0.7063	79.589	79.265	79.971	-1.6485					40	13	4	0	0	0	0.49595	1	6892	6892		54.722	7.065	1	815950	+		24763	25630	20254	20278	27580	27580		576			0.07347487356560123
KLTSTKMKPF	10	Oxidation (M)	_KLTSTKM(Oxidation (M))KPF_					0	0	1			REV__ENST00000423403.1_1_1:61195330-61291150:-|nuORF	REV__ENST00000423403.1_1_1:61195330-61291150:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	598.839017	1195.66348	-0.083432	-4.9962E-05	-1.096	-0.00065631	-1.1794	-0.00070627	598.8381161590047	81.237	0.7063	79.589	79.265	79.971	-1.6485	-0.04707	8.8932E-05	NaN	54.722	40	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	815950	+		24764	25630	20254	20278				576			0.07347487356560123
KLTSTKMKPF	10	Oxidation (M)	_KLTSTKM(Oxidation (M))KPF_					0	0	1			REV__ENST00000423403.1_1_1:61195330-61291150:-|nuORF	REV__ENST00000423403.1_1_1:61195330-61291150:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	598.839017	1195.66348	0.67272	0.00040285	-1.342	-0.00080363	-0.66926	-0.00040078	598.8377502460261	81.831	2.7777	79.522	78.919	81.697	-2.3089	-0.11398	-0.00020571	NaN	54.722	137	56	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	579760	+		24765	25630	20254	20278				576			0.07347487356560123
KLTTFIDKL	9	Unmodified	_KLTTFIDKL_					0	0	0			REV__L1MB8_dup1504|chr2:66557263-66557700:-|1.0682586595280574|0.4005602629802645|1.42|429.0|25|2|anti-sense	REV__L1MB8_dup1504|chr2:66557263-66557700:-|1.0682586595280574|0.4005602629802645|1.42|429.0|25|2|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	539.83056640625	2	539.828975	1077.6434	1.8274	0.00098647	-0.11531	-6.2249E-05	1.7121	0.00092422	539.8287749397163	87.559	1.3295	87.559	87.054	88.384	0					94	31	4	0	0	0	0.16562	1	9311	9311		82.241	0	1	6975400	+		24766	28420	20255	20279	27581	27581					0.10768059688257381
KLTVTYLL	8	Unmodified	_KLTVTYLL_					0	0	0		tr|A0A553SFA1|A0A553SFA1_NIACIAldose1-epimeraseOS=NialliacirculansOX=1397GN=CEQ21_08535PE=3SV=1	tr|A0A553SFA1|A0A553SFA1_NIACIAldose1-epimeraseOS=NialliacirculansOX=1397GN=CEQ21_08535PE=3SV=1	tr|A0A553SFA1|A0A553SFA1_NIACIAldose1-epimeraseOS=NialliacirculansOX=1397GN=CEQ21_08535PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	475.7983093261719	2	475.799686	949.584819	-1.1416	-0.00054318	-1.7588	-0.00083684	-2.9004	-0.00138	475.7987527158406	55.46	1.1933	52.646	52.022	53.215	-2.8139					74	23	4	0	0	0	0.75241	1	3839	3839		25.45	1.2474	1	547610			24767	33010	20256	20280	27582	27582					0.10801003113806473
KLTYIYIQK	9	Unmodified	_KLTYIYIQK_					0	0	0		ENST00000383746.7_2_3:44396236-44396287:+|nuORF	ENST00000383746.7_2_3:44396236-44396287:+|nuORF	ENST00000383746.7_2_3:44396236-44396287:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	585.349365234375	2	585.350074	1168.6856	-0.26209	-0.00015341	-0.38771	-0.00022694	-0.6498	-0.00038036	585.3497928295034	72.858	5.1582	70.458	70.011	75.169	-2.3999					240	98	5	0	0	0	0.0067332	15	5908	5902;5908;5914;5920;5926;5932;5938;5944;5950;5956;5962;5970;5976;5982;5988		223.88	0	1	4074000			24768	11189	20257	20281	27583;27584;27585;27586;27587;27588;27589;27590;27591;27592;27593;27594;27595;27596;27597	27584					0.10800035096622196
KLTYIYIQK	9	Unmodified	_KLTYIYIQK_					0	0	0		ENST00000383746.7_2_3:44396236-44396287:+|nuORF	ENST00000383746.7_2_3:44396236-44396287:+|nuORF	ENST00000383746.7_2_3:44396236-44396287:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	585.3499145507812	2	585.350074	1168.6856	-1.4334	-0.00083903	0.75059	0.00043936	-0.68278	-0.00039967	585.3504830753127	73.042	4.5731	70.555	70.183	74.756	-2.4873					268	90	6	0	0	0	1.0197E-06	16	3515	3511;3515;3521;3527;3533;3539;3545;3551;3557;3563;3569;3575;3582;3588;3596;3603		254.98	0	1	5902000			24769	11189	20257	20281	27598;27599;27600;27601;27602;27603;27604;27605;27606;27607;27608;27609;27610;27611;27612;27613	27599					0.10800035096622196
KLTYIYIQK	9	Unmodified	_KLTYIYIQK_					0	0	0		ENST00000383746.7_2_3:44396236-44396287:+|nuORF	ENST00000383746.7_2_3:44396236-44396287:+|nuORF	ENST00000383746.7_2_3:44396236-44396287:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	585.3516845703125	2	585.350074	1168.6856	-0.99429	-0.00058201	0.34952	0.00020459	-0.64477	-0.00037741	585.3502574875387	74.144	2.7716	70.914	70.628	73.399	-3.2308					180	57	6	0	0	0	1.0197E-06	8	5780	5769;5780;5792;5804;5817;5829;5841;5854		254.98	0	1	5583100			24770	11189	20257	20281	27614;27615;27616;27617;27618;27619;27620;27621	27615					0.10800035096622196
KLVAERKEV	9	Unmodified	_KLVAERKEV_					0	0	0			REV__MDC1|p.N466K|1|0.11|ENSG00000137337|chr6:30712544-30712544|A/T|missense_variant	REV__MDC1|p.N466K|1|0.11|ENSG00000137337|chr6:30712544-30712544|A/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	536.3294067382812	2	536.329673	1070.64479	-0.96821	-0.00051928	-0.035768	-1.9184E-05	-1.004	-0.00053846	536.3296972347545	34.322	1.6874	34.322	34.065	35.753	0					89	35	5	0	0	0	0.094616	1	1631	1631		98.629	5.4339	1	13293000	+		24771	28647	20258	20282	27622	27622					0.11229693777045213
KLVAHACWA	9	Unmodified	_KLVAHACWA_					0	0	0		nc|ENSG00000020219|A6NM43|CCT8L1P;ENSG00000198445|ENST00000359963|CCT8L2	nc|ENSG00000020219|A6NM43|CCT8L1P	nc|ENSG00000020219|A6NM43|CCT8L1P	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.759765625	2	499.765655	997.516756	0.0092522	4.6239E-06	2.0391	0.001019	2.0483	0.0010237	499.7664428226374	59.882	1.1306	56.452	56.013	57.144	-3.43					45	22	3	0	0	0	0.027462	1	4061	4061		40.573	8.6178	1	337950			24772	8819	20259	20283	27623	27623					0.017898549821325105
KLVAHACWA	9	Unmodified	_KLVAHACWA_					0	0	0		nc|ENSG00000020219|A6NM43|CCT8L1P;ENSG00000198445|ENST00000359963|CCT8L2	nc|ENSG00000020219|A6NM43|CCT8L1P	nc|ENSG00000020219|A6NM43|CCT8L1P	MULTI-MATCH	OvCa9_classI_Rep2	2		2	499.765655	997.516756	-0.64507	-0.00032238	2.9143	0.0014565	2.2692	0.0011341	499.76699088415813	59.258	0.98636	56.478	56.036	57.022	-2.7801	0.012925	0.00024449	NaN	31.955	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123770			24773	8819	20259	20283							0.017898549821325105
KLVAKKLKL	9	Unmodified	_KLVAKKLKL_					0	0	0			REV__ENST00000480924.3_1_12:87563815-87564172:-|nuORF	REV__ENST00000480924.3_1_12:87563815-87564172:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.3119506835938	2	520.881345	1039.74814	-0.92626	-0.00048247	-2.3849	-0.0012423	-3.3112	-0.0017247	520.878888574659	83.905	0.79061	81.644	81.566	82.357	-2.261					19	16	2	0	0	0	0.027462	1	4864	4864		11.511	0	1	28787	+		24774	26468	20260	20284	27624	27624					0.2298522595549457
KLVAKKVE	8	Unmodified	_KLVAKKVE_					0	0	0			REV__ENSG00000236981|ENST00000375024|OR10G9	REV__ENSG00000236981|ENST00000375024|OR10G9	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.7661437988281	2	457.805303	913.596052	-0.29497	-0.00013504	0.45819	0.00020976	0.16322	7.4721E-05	457.80523370026503	54.285	0.84291	54.285	54.048	54.891	0					25	19	2	0	0	0	0.028476	1	4380	4380		30.504	0	1	253530	+		24775	23415	20261	20285	27625	27625					0.13579825207932572
KLVCFKKK	8	Unmodified	_KLVCFKKK_					0	0	0			REV__ANKRD30A|p.K1183Sfs*12|1|0.04|ENSG00000148513|chr10:37219257-37219258|-/GTCATTTG|frameshift_variant	REV__ANKRD30A|p.K1183Sfs*12|1|0.04|ENSG00000148513|chr10:37219257-37219258|-/GTCATTTG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.29266357421875	2	497.317523	992.620493	-0.13903	-6.9142E-05	-2.1159	-0.0010523	-2.2549	-0.0011214	497.3161304476395	114.61	0.18123	114.61	114.47	114.65	0					5	3	2	0	0	0	0.028476	1	13073	13073		24.203	0	1	50302	+		24776	15634	20262	20286	27626	27626					0.12388762089813099
KLVDFVIHF	9	Unmodified	_KLVDFVIHF_					0	0	0		ENSG00000241553|ENST00000397261|ARPC4;ENST00000467289.5_1_3:9834805-9845712:+|nuORF;nc|ENSG00000241553|P59998-3|ARPC4;ENST00000440787.5_1_3:9845376-9847896:+|nuORF;nc|ENSG00000241553|P59998-4|ARPC4	ENSG00000241553|ENST00000397261|ARPC4	ENSG00000241553|ENST00000397261|ARPC4	MULTI-MSMS	OvCa99_classI_Rep5	1	559.3248901367188	2	559.32386	1116.63317	2.4084	0.0013471	0.088793	4.9664E-05	2.4972	0.0013967	559.3236287626712	122.32	0.86928	122.32	121.99	122.86	0					27	18	2	0	0	0	0.19758	1	14086	14086		76.774	25.439	1	185520			24777	9352	20263	20287	27627	27627					0.07951496753685205
KLVDIAIACG	10	Unmodified	_KLVDIAIACG_					0	0	0			REV__tr|A0A553SK18|A0A553SK18_NIACIM42familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_17950PE=3SV=1	REV__tr|A0A553SK18|A0A553SK18_NIACIM42familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_17950PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.7596130371094	2	501.786253	1001.55795	-0.71232	-0.00035743	3.927	0.0019705	3.2147	0.0016131	501.78813807221763	33.897	0.43311	33.897	33.632	34.065	0					14	8	2	0	0	0	0.027028	1	1572	1572		24.519	12.312	1	641650	+		24778	30066	20264	20288	27628	27628					0.05723571230953439
KLVDKILIN	9	Unmodified	_KLVDKILIN_					0	0	0			REV__nc|ENSG00000080823|Q9UQ07-6|MOK	REV__nc|ENSG00000080823|Q9UQ07-6|MOK	MULTI-MSMS	OvCa99_classI_Rep5	1	528.3462524414062	2	528.344792	1054.67503	2.2568	0.0011924	-0.52445	-0.00027709	1.7324	0.00091529	528.3445243532176	87.69	1.8968	87.69	87.378	89.275	0					154	45	5	0	0	0	0.055627	1	9364	9364		115.49	3.0831	1	60651000	+		24779	28740	20265	20289	27629	27629					0.14988052442231492
KLVDKSTEL	9	Unmodified	_KLVDKSTEL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	516.801513671875	2	516.800414	1031.58628	-0.63393	-0.00032762	0.32648	0.00016873	-0.30745	-0.00015889	516.8004120798754	48.784	0.91788	48.784	48.455	49.373	0					62	20	4	0	0	0	0.066102	2	3610	3590;3610		109.48	7.9811	1	4734900			24780	6293	20266	20290	27630;27631	27631					0.07174592411888625
KLVDRIGII	9	Unmodified	_KLVDRIGII_					0	0	0		tr|A0A7D7A179|A0A7D7A179_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02835PE=4SV=1	tr|A0A7D7A179|A0A7D7A179_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02835PE=4SV=1	tr|A0A7D7A179|A0A7D7A179_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02835PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	513.837158203125	2	513.837134	1025.65972	2.9212	0.001501	-0.96173	-0.00049417	1.9594	0.0010068	513.8364987763683	97.335	0.98666	97.335	97.05	98.037	0					61	22	4	0	0	0	0.19758	1	10703	10703		76.774	10.345	1	7783800			24781	36028	20267	20291	27632	27632					0.14791185645026417
KLVEKHKE	8	Unmodified	_KLVEKHKE_					0	0	0		ENSG00000182621|ENST00000338037|PLCB1;nc|ENSG00000182621|Q9NQ66-2|PLCB1	ENSG00000182621|ENST00000338037|PLCB1	ENSG00000182621|ENST00000338037|PLCB1	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.2862548828125	2	505.803291	1009.59203	0.61499	0.00031106	1.7548	0.00088761	2.3698	0.0011987	505.8026876379172	29.932	0.97388	27.222	26.83	27.804	-2.7097					39	19	4	0	0	0	0.028476	1	828	828		54.776	12.38	1	50124			24782	8014	20268	20292	27633	27633					0.08761735714222141
KLVELPYTV	9	Unmodified	_KLVELPYTV_					0	0	0		ENSG00000092094|ENST00000206542|OSGEP;ENST00000556124.3_1_14:20916255-20917133:-|nuORF;ENST00000555656.5_1_14:20915401-20917107:-|nuORF	ENSG00000092094|ENST00000206542|OSGEP	ENSG00000092094|ENST00000206542|OSGEP	MULTI-MSMS	OvCa99_classI_Rep5	1	531.3154296875	2	531.3157	1060.61685	1.9961	0.0010606	-0.36135	-0.00019199	1.6347	0.00086856	531.3153054546185	106.7	0.99451	106.7	106.36	107.36	0					50	22	3	0	0	0	0.075543	1	12030	12030		104.06	13.687	1	4217500			24783	1885	20269	20293	27634	27634					0.08896370796924202
KLVELPYTV	9	Unmodified	_KLVELPYTV_					0	0	0		ENSG00000092094|ENST00000206542|OSGEP;ENST00000556124.3_1_14:20916255-20917133:-|nuORF;ENST00000555656.5_1_14:20915401-20917107:-|nuORF	ENSG00000092094|ENST00000206542|OSGEP	ENSG00000092094|ENST00000206542|OSGEP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	531.3157	1060.61685	-0.82904	-0.00044048	0.26345	0.00013998	-0.56558	-0.0003005	531.3156907070522	107.07	1.0763	106.77	106.37	107.45	-0.30836	-0.022204	0.00013167	NaN	104.06	49	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113850			24784	1885	20269	20293							0.08896370796924202
KLVELPYTV	9	Unmodified	_KLVELPYTV_					0	0	0		ENSG00000092094|ENST00000206542|OSGEP;ENST00000556124.3_1_14:20916255-20917133:-|nuORF;ENST00000555656.5_1_14:20915401-20917107:-|nuORF	ENSG00000092094|ENST00000206542|OSGEP	ENSG00000092094|ENST00000206542|OSGEP	MULTI-MATCH	OvCa9_classI_Rep3	3		2	531.3157	1060.61685	0.32751	0.00017401	-0.60414	-0.00032099	-0.27663	-0.00014698	531.3152145377371	108.06	1.1823	106.86	106.53	107.72	-1.1978	0.075358	-0.00079026	NaN	104.06	51	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139890			24785	1885	20269	20293							0.08896370796924202
KLVELPYTV	9	Unmodified	_KLVELPYTV_					0	0	0		ENSG00000092094|ENST00000206542|OSGEP;ENST00000556124.3_1_14:20916255-20917133:-|nuORF;ENST00000555656.5_1_14:20915401-20917107:-|nuORF	ENSG00000092094|ENST00000206542|OSGEP	ENSG00000092094|ENST00000206542|OSGEP	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	531.3157	1060.61685	-2.4627	-0.0013085	1.8348	0.00097484	-0.62795	-0.00033364	531.3164808088237	108.55	0.95905	106.82	106.62	107.58	-1.7256	0.035178	0.0018014	NaN	104.06	35	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128540			24786	1885	20269	20293							0.08896370796924202
KLVERYKDI	9	Unmodified	_KLVERYKDI_					0	0	0			REV__ENST00000480739.2_1_12:58068877-58069030:+|nuORF	REV__ENST00000480739.2_1_12:58068877-58069030:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	582.346435546875	2	582.342781	1162.67101	2.2284	0.0012977	3.0533	0.001778	5.2817	0.0030758	582.3445401660628	100.7	1.8899	100.7	100.4	102.29	0					155	44	5	0	0	0	0.16264	1	11242	11242		82.75	5.4329	1	32953000	+		24787	26466	20270	20294	27635	27635					0.0961796294850501
KLVFLVAVS	9	Unmodified	_KLVFLVAVS_					0	0	0			REV__ENST00000524591.6_1_8:12878711-12878915:+|nuORF	REV__ENST00000524591.6_1_8:12878711-12878915:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.2868347167969	2	488.315503	974.616454	1.9377	0.00094621	1.6341	0.00079795	3.5718	0.0017442	488.31863004722385	85.707	0.16497	85.707	85.585	85.75	0					7	3	3	0	0	0	0.027462	1	8992	8992		24.203	3.7209	1	119110	+		24788	27102	20271	20295	27636	27636					0.12812995867750487
KLVFWRRRWR	10	Unmodified	_KLVFWRRRWR_					0	0	0			REV__ENSG00000142675|ENST00000361530|CNKSR1	REV__ENSG00000142675|ENST00000361530|CNKSR1	MULTI-MSMS	OvCa9_classI_Rep2	2	501.6341857910156	3	501.637106	1501.88949	-5.5139	-0.002766	-0.52876	-0.00026525	-6.0427	-0.0030312	501.63686894791874	162.29	1.9089	162.06	160.59	162.5	-0.22696					90	37	3	0	0	0	0.91619	1	16485	16485		4.6126	0.99349	1	106580	+		24789	19801	20272	20296	27637	27637					0.15862037101328497
KLVGHFKP	8	Unmodified	_KLVGHFKP_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.27972412109375	2	463.284537	924.554522	0.081722	3.7861E-05	1.4846	0.00068779	1.5663	0.00072565	463.2853829713006	84.031	0.74771	81.368	81.167	81.914	-2.6629					23	15	2	0	0	0	0.028476	1	7010	7010		12.207	0	1	41285	+		24790	23506	20273	20297	27638	27638					0.08922689239261672
KLVIAPLNI	9	Unmodified	_KLVIAPLNI_					0	0	0		nc|ENSG00000086848|Q9H6U8-2|ALG9;nc|ENSG00000086848|Q9H6U8-4|ALG9;nc|ENSG00000086848|Q9H6U8|ALG9;ENSG00000086848|ENST00000616540|ALG9;ENST00000530851.6_1_11:111680495-111728441:-|nuORF	nc|ENSG00000086848|Q9H6U8-2|ALG9	nc|ENSG00000086848|Q9H6U8-2|ALG9	MULTI-SECPEP	OvCa9_classI_Rep2	2	491.78253173828125	2	490.828778	979.643003	0.55496	0.00027239	-0.98763	-0.00048476	-0.43267	-0.00021237	490.8282518316254	70.261	1.6292	67.69	67.165	68.794	-2.5707					70	31	4	0	0	0	0.027462	1	5688	5688		23.042	0	1	152870			24791	1755	20274	20298	27639	27639					0.1523668475906561
KLVIDRVKF	9	Unmodified	_KLVIDRVKF_					0	0	0			REV__tr|A0A7D6VXK7|A0A7D6VXK7_9CLOTDNArepairATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11665PE=4SV=1	REV__tr|A0A7D6VXK7|A0A7D6VXK7_9CLOTDNArepairATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11665PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	559.3599853515625	2	559.358234	1116.70191	3.8417	0.0021489	-2.5091	-0.0014035	1.3326	0.00074539	559.3566920045192	97.5	1.0264	97.5	97.18	98.206	0					67	23	4	0	0	0	0.2422	1	10740	10740		69.628	2.134	1	4960100	+		24792	31781	20275	20299	27640	27640					0.1482316105341397
KLVIKIRF	8	Unmodified	_KLVIKIRF_					0	0	0			REV__ENST00000594681.5_1_19:53757854-53757914:-|nuORF	REV__ENST00000594681.5_1_19:53757854-53757914:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.8037109375	2	508.852587	1015.69062	-0.74457	-0.00037888	-4.2567	-0.002166	-5.0013	-0.0025449	508.8506912902866	75.006	0.43784	72.595	72.241	72.679	-2.4106					14	8	3	0	0	0	0.028476	1	3737	3737		26.796	7.4361	1	38684	+		24793	27984	20276	20300	27641	27641					0.18340383749932698
KLVIPSELGK	10	Unmodified	_KLVIPSELGK_					0	0	0		ENST00000536642.5_1_11:64008530-64011025:+|nuORF	ENST00000536642.5_1_11:64008530-64011025:+|nuORF	ENST00000536642.5_1_11:64008530-64011025:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.2968139648438	2	542.342249	1082.66995	1.4555	0.00078938	0.35385	0.00019191	1.8093	0.00098128	542.3422817330048	118.99	0.52045	118.99	118.77	119.29	0					18	10	2	0	0	0	0.02717	1	13623	13623		17.468	5.957	1	116920			24794	13391	20277	20301	27642	27642					0.1319174857960661
KLVITSIMN	9	Unmodified	_KLVITSIMN_					0	0	0		tr|A0A553STN7|A0A553STN7_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_05480PE=3SV=1	tr|A0A553STN7|A0A553STN7_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_05480PE=3SV=1	tr|A0A553STN7|A0A553STN7_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_05480PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	509.80303955078125	2	509.801903	1017.58925	-0.41042	-0.00020923	4.0745	0.0020772	3.6641	0.001868	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.69123	1	13482	13482		20.947	0	1	150140			24795	34511	20278	20302	27643	27643					0.08116144265068215
KLVKEVIAV	9	Unmodified	_KLVKEVIAV_					0	0	0		ENSG00000105379|ENST00000309244|ETFB;nc|ENSG00000105379|P38117-2|ETFB	ENSG00000105379|ENST00000309244|ETFB	ENSG00000105379|ENST00000309244|ETFB	MULTI-MSMS	OvCa99_classI_Rep5	1	499.8355712890625	2	499.83406	997.653567	-0.52563	-0.00026273	1.0131	0.00050638	0.48748	0.00024366	499.8343509833607	69.534	0.86295	69.534	69.307	70.17	0					58	20	4	0	0	0	0.075543	1	6619	6619		104.06	24.606	1	4910500			24796	2451	20279	20303	27644	27644					0.1546466741350514
KLVKLNRAP	9	Unmodified	_KLVKLNRAP_					0	0	0			REV__ENSG00000104951|ENST00000391826|IL4I1	REV__ENSG00000104951|ENST00000391826|IL4I1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2696533203125	2	519.842751	1037.67095	-0.13435	-6.9839E-05	-0.039389	-2.0476E-05	-0.17374	-9.0315E-05	519.8426412055813	71.998	0.58067	71.998	71.668	72.249	0					23	13	3	0	0	0	0.027462	1	6943	6943		11.511	0	1	450560	+		24797	17695	20280	20304	27645	27645					0.15362007739167893
KLVKYFPP	8	Unmodified	_KLVKYFPP_					0	0	0		tr|A0A553SIQ4|A0A553SIQ4_NIACIPurinepermeaseOS=NialliacirculansOX=1397GN=CEQ21_15300PE=3SV=1	tr|A0A553SIQ4|A0A553SIQ4_NIACIPurinepermeaseOS=NialliacirculansOX=1397GN=CEQ21_15300PE=3SV=1	tr|A0A553SIQ4|A0A553SIQ4_NIACIPurinepermeaseOS=NialliacirculansOX=1397GN=CEQ21_15300PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.2986145019531	2	496.302396	990.590239	0.59094	0.00029328	-2.5947	-0.0012877	-2.0037	-0.00099446	496.30102422265776	114.14	0.9614	114.14	113.92	114.88	0					26	20	2	0	0	0	0.028476	1	13014	13014		46.766	7.7449	1	199290			24798	33411	20281	20305	27646	27646					0.09456726696271289
KLVKYFPP	8	Unmodified	_KLVKYFPP_					0	0	0		tr|A0A553SIQ4|A0A553SIQ4_NIACIPurinepermeaseOS=NialliacirculansOX=1397GN=CEQ21_15300PE=3SV=1	tr|A0A553SIQ4|A0A553SIQ4_NIACIPurinepermeaseOS=NialliacirculansOX=1397GN=CEQ21_15300PE=3SV=1	tr|A0A553SIQ4|A0A553SIQ4_NIACIPurinepermeaseOS=NialliacirculansOX=1397GN=CEQ21_15300PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	496.302396	990.590239	0.33633	0.00016692	-4.6428	-0.0023042	-4.3064	-0.0021373	496.2999461041838	113.92	0.888	113.81	113.57	114.45	-0.11777	-0.15108	-0.00061718	NaN	65.897	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32953			24799	33411	20281	20305							0.09456726696271289
KLVKYFPP	8	Unmodified	_KLVKYFPP_					0	0	0		tr|A0A553SIQ4|A0A553SIQ4_NIACIPurinepermeaseOS=NialliacirculansOX=1397GN=CEQ21_15300PE=3SV=1	tr|A0A553SIQ4|A0A553SIQ4_NIACIPurinepermeaseOS=NialliacirculansOX=1397GN=CEQ21_15300PE=3SV=1	tr|A0A553SIQ4|A0A553SIQ4_NIACIPurinepermeaseOS=NialliacirculansOX=1397GN=CEQ21_15300PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	496.302396	990.590239	-0.3499	-0.00017366	-4.2815	-0.0021249	-4.6314	-0.0022986	496.30008819977536	115	0.69102	113.94	113.65	114.34	-1.055	-0.015145	-0.00025858	NaN	65.897	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29621			24800	33411	20281	20305							0.09456726696271289
KLVKYFPP	8	Unmodified	_KLVKYFPP_					0	0	0		tr|A0A553SIQ4|A0A553SIQ4_NIACIPurinepermeaseOS=NialliacirculansOX=1397GN=CEQ21_15300PE=3SV=1	tr|A0A553SIQ4|A0A553SIQ4_NIACIPurinepermeaseOS=NialliacirculansOX=1397GN=CEQ21_15300PE=3SV=1	tr|A0A553SIQ4|A0A553SIQ4_NIACIPurinepermeaseOS=NialliacirculansOX=1397GN=CEQ21_15300PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	496.302396	990.590239	0.30541	0.00015157	-4.622	-0.0022939	-4.3166	-0.0021423	496.2997900190033	115.33	0.8483	113.94	113.57	114.42	-1.3977	-0.019572	-0.00059654	NaN	65.897	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31515			24801	33411	20281	20305							0.09456726696271289
KLVLLWKH	8	Unmodified	_KLVLLWKH_					0	0	0		nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2;nc|ENSG00000198198|Q5T011-4|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.7979125976562	2	518.836937	1035.65932	-0.97282	-0.00050473	-4.0711	-0.0021122	-5.0439	-0.002617	518.8343013561336	80.225	0.44456	77.514	77.318	77.762	-2.7106					12	8	2	0	0	0	0.028476	1	6548	6548		24.203	0	1	14534			24802	8795	20282	20306	27647	27647					0.14291810715826614
KLVLPETVL	9	Unmodified	_KLVLPETVL_					0	0	0			REV__ENSG00000129250|ENST00000320785|KIF1C	REV__ENSG00000129250|ENST00000320785|KIF1C	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.32574462890625	2	506.326068	1010.63758	-0.73274	-0.000371	-2.0809	-0.0010536	-2.8136	-0.0014246	506.3247571344643	76.963	1.4521	74.091	73.804	75.256	-2.8727					91	29	6	0	0	0	0.56889	1	6142	6142		35.618	0	1	929890	+		24803	18891	20283	20307	27648	27648					0.13268961176606808
KLVLVPWFT	9	Unmodified	_KLVLVPWFT_					0	0	0		Harlequin-int_dup157|chr4:69051711-69052349:+|1.0121776539514982|0.0619131635885363|4.03|410.0|27|1|anti-sense	Harlequin-int_dup157|chr4:69051711-69052349:+|1.0121776539514982|0.0619131635885363|4.03|410.0|27|1|anti-sense	Harlequin-int_dup157|chr4:69051711-69052349:+|1.0121776539514982|0.0619131635885363|4.03|410.0|27|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.79345703125	2	551.836603	1101.65865	-0.42015	-0.00023185	-4.4623	-0.0024624	-4.8824	-0.0026943	551.8343227648381	66.481	1.0291	62.991	62.66	63.689	-3.4902					54	20	4	0	0	0	0.027462	1	4833	4833		23.042	0	1	86030			24804	14356	20284	20308	27649	27649					0.11188971276123993
KLVMEKPNI	9	Unmodified	_KLVMEKPNI_					0	0	0		tr|A0A7D6W1R9|A0A7D6W1R9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04270PE=4SV=1	tr|A0A7D6W1R9|A0A7D6W1R9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04270PE=4SV=1	tr|A0A7D6W1R9|A0A7D6W1R9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04270PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.814697265625	2	536.315177	1070.6158	0.2653	0.00014228	3.8908	0.0020867	4.1561	0.002229	536.3174355940808	96.919	1.3056	94.493	93.609	94.915	-2.4256					37	25	3	0	0	0	0.027462	1	8578	8578		45.972	8.8131	1	463450			24805	35416	20285	20309	27650	27650					0.08331833156398716
KLVMFTWF	8	Unmodified	_KLVMFTWF_					0	0	0			REV__ENST00000261839.11_1_15:52548900-52553134:-|nuORF	REV__ENST00000261839.11_1_15:52548900-52553134:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	536.2890625	2	536.288431	1070.56231	2.1097	0.0011314	2.2811	0.0012234	4.3908	0.0023547	536.2896135512111	110.41	0.80288	110.41	110.13	110.94	0					47	17	4	0	0	0	0.30448	1	12524	12524		106.42	5.1626	1	1112400	+		24806	23960	20286	20310	27651	27651					0.029850804445231915
KLVMFTWF	8	Unmodified	_KLVMFTWF_					0	0	0			REV__ENST00000261839.11_1_15:52548900-52553134:-|nuORF	REV__ENST00000261839.11_1_15:52548900-52553134:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	536.288431	1070.56231	2.3463	0.0012583	9.0165	0.0048354	11.363	0.0060937	536.2930486463143	111.39	0.44605	110.29	110.15	110.6	-1.1038	-0.059092	0.0065489	NaN	106.42	19	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28700	+		24807	23960	20286	20310							0.029850804445231915
KLVMVMEPQ	9	Unmodified	_KLVMVMEPQ_					0	0	0			REV__ENSG00000187833|ENST00000409561|C2orf78	REV__ENSG00000187833|ENST00000409561|C2orf78	MULTI-SECPEP	OvCa9_classI_Rep3	3	537.807373046875	2	537.787938	1073.56132	0.54	0.00029041	-2.0524	-0.0011038	-1.5124	-0.00081337	537.7865661965412	97.517	0.95108	95.758	95.569	96.52	-1.7595					31	18	3	0	0	0	0.027433	1	6547	6547		54.776	24.273	1	89504	+		24808	22670	20287	20311	27652	27652					0.027484980133294812
KLVMVMEPQ	9	Unmodified	_KLVMVMEPQ_					0	0	0			REV__ENSG00000187833|ENST00000409561|C2orf78	REV__ENSG00000187833|ENST00000409561|C2orf78	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	537.787938	1073.56132	-0.47266	-0.00025419	-2.3366	-0.0012566	-2.8093	-0.0015108	537.7863095830232	98.127	0.65383	95.749	95.47	96.124	-2.3786	-0.0046421	-0.0001936	NaN	54.776	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78154	+		24809	22670	20287	20311							0.027484980133294812
KLVNETFQKL	10	Unmodified	_KLVNETFQKL_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;ENSG00000164190|ENST00000282516|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-SECPEP	OvCa99_classI_Rep5	1	610.7811279296875	2	610.355888	1218.69722	-0.18131	-0.00011066	1.8488	0.0011284	1.6675	0.0010178	610.3566697422644	41.262	0.66494	41.262	41.059	41.724	0					17	14	2	0	0	0	0.026826	1	2543	2543		36.447	14.487	1	94819			24810	6432	20288	20312	27653	27653					0.09662232119990222
KLVNGPKR	8	Unmodified	_KLVNGPKR_					0	0	0			REV__ENSG00000099250|ENST00000374867|NRP1	REV__ENSG00000099250|ENST00000374867|NRP1	MULTI-MSMS	OvCa99_classI_Rep5	1	456.29718017578125	2	456.292894	910.571235	2.7909	0.0012735	4.1869	0.0019105	6.9778	0.0031839	456.2946454765027	94.271	0.55339	94.271	94.007	94.56	0					19	12	2	0	0	0	0.7224	1	10250	10250		38.806	6.8513	1	450220	+		24811	17315	20289	20313	27654	27654					0.11237190125223151
KLVNKPLI	8	Unmodified	_KLVNKPLI_					0	0	0			REV__ENSG00000174231|ENST00000304992|PRPF8	REV__ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.81591796875	2	462.81567	923.616788	-1.3705	-0.00063427	1.6365	0.00075741	0.26607	0.00012314	462.8162525867665	124.35	1.1392	122.96	122.72	123.86	-1.3908					41	21	3	0	0	0	0.66704	1	11800	11800		50.025	7.5501	1	70673	+		24812	21818	20290	20314	27655	27655					0.15192415587614505
KLVNKPLI	8	Unmodified	_KLVNKPLI_					0	0	0			REV__ENSG00000174231|ENST00000304992|PRPF8	REV__ENSG00000174231|ENST00000304992|PRPF8	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	462.81567	923.616788	1.3541	0.00062669	-1.2283	-0.00056849	0.12575	5.8198E-05	462.81490248435756	123.95	1.1912	122.91	122.62	123.81	-1.0377	0.11152	-0.0015614	NaN	50.025	36	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70585	+		24813	21818	20290	20314							0.15192415587614505
KLVNKPLI	8	Unmodified	_KLVNKPLI_					0	0	0			REV__ENSG00000174231|ENST00000304992|PRPF8	REV__ENSG00000174231|ENST00000304992|PRPF8	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	462.81567	923.616788	-1.3705	-0.00063427	1.6365	0.00075741	0.26607	0.00012314	462.8162525867665	124.35	1.1392	122.96	122.72	123.86	-1.3908	0.15651	0.0010904	NaN	50.025	41	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70673	+		24814	21818	20290	20314							0.15192415587614505
KLVNKPLIY	9	Unmodified	_KLVNKPLIY_					0	0	0			REV__ENSG00000174231|ENST00000304992|PRPF8	REV__ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	OvCa9_classI_Rep2	2	544.3467407226562	2	544.347335	1086.68012	0.74405	0.00040502	-0.74307	-0.00040449	0.00098399	5.3563E-07	544.346788814307	129.27	1.1853	129.05	128.77	129.96	-0.22696					60	23	4	0	0	0	0.42057	3	12694	12688;12694;12712		50.025	15.852	1	195480	+		24815	21818	20291	20315	27656;27657;27658	27657					0.1402435630486707
KLVNLELVL	9	Unmodified	_KLVNLELVL_					0	0	0		ENST00000335508.10_1_2:198268409-198268487:-|nuORF	ENST00000335508.10_1_2:198268409-198268487:-|nuORF	ENST00000335508.10_1_2:198268409-198268487:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.3101196289062	2	520.839342	1039.66413	-0.11556	-6.0187E-05	-1.892	-0.00098544	-2.0076	-0.0010456	520.8388005145583	83.579	0.44879	81.981	81.825	82.274	-1.5988					10	8	2	0	0	0	0.027462	1	7167	7167		36.447	7.2972	1	10672			24816	10496	20292	20316	27659	27659					0.14588650067912567
KLVNNRKQ	8	Unmodified	_KLVNNRKQ_					0	0	0			REV__ENST00000477096.1_1_1:71530734-71530788:-|nuORF	REV__ENST00000477096.1_1_1:71530734-71530788:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	500.3062744140625	2	500.306532	998.598512	1.8295	0.00091529	-2.0216	-0.0010114	-0.1921	-9.611E-05	500.3053685545666	27.721	1.1711	25.012	24.828	25.999	-2.7097					57	25	3	0	0	0	0.62934	3	496	496;506;511		57.811	9.8957	1	318060	+		24817	26380	20293	20317	27660;27661;27662	27660					0.09915673665602753
KLVPQSLCF	9	Unmodified	_KLVPQSLCF_					0	0	0			REV__ENSG00000197136|ENST00000355703|PCNX3	REV__ENSG00000197136|ENST00000355703|PCNX3	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.2510986328125	2	517.788795	1033.56304	2.1796	0.0011286	3.2123	0.0016633	5.3919	0.0027919	517.7931125739086	75.873	0.19453	75.873	75.801	75.996	0					7	4	2	0	0	0	0.027462	1	7570	7570		24.203	0	1	164060	+		24818	22895	20294	20318	27663	27663					0.04759875093577648
KLVQARIQ	8	Unmodified	_KLVQARIQ_					0	0	0			REV__nc|ENSG00000273085|Q8NGJ3|OR52E1	REV__nc|ENSG00000273085|Q8NGJ3|OR52E1	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.7901306152344	2	478.306001	954.597449	-0.8819	-0.00042182	0.20953	0.00010022	-0.67237	-0.0003216	478.30556712533587	34.328	0.28333	34.328	34.161	34.444	0					8	5	2	0	0	0	0.028476	1	1636	1636		55.504	7.5886	1	36278	+		24819	29191	20295	20319	27664	27664					0.11833459296701676
KLVQERRMLMR	11	Unmodified	_KLVQERRMLMR_					0	0	0			REV__ENSG00000153201|ENST00000283195|RANBP2	REV__ENSG00000153201|ENST00000283195|RANBP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.7955017089844	3	487.283124	1458.82754	-0.70337	-0.00034274	0.37208	0.00018131	-0.33129	-0.00016143	487.2827859632581	41.671	0.39056	41.671	41.462	41.853	0					13	8	3	0	0	0	0.026068	1	2604	2604		21.78	0	1	122370	+		24820	20326	20296	20320	27665	27665					0.11648181575674244
KLVQMLKDI	9	Unmodified	_KLVQMLKDI_					0	0	0		ENSG00000182836|ENST00000377801|PLCXD3;PLCXD3|p.G167R|1|0.22|ENSG00000182836|chr5:41382139-41382139|C/T|missense_variant	ENSG00000182836|ENST00000377801|PLCXD3	ENSG00000182836|ENST00000377801|PLCXD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2621459960938	2	544.330827	1086.6471	1.7441	0.00094934	4.0422	0.0022003	5.7863	0.0031497	544.3338682147833	77.793	0.50565	77.793	77.588	78.093	0					14	11	2	0	0	0	0.027447	1	7841	7841		31.53	4.7337	1	377880			24821	8029	20297	20321	27666	27666					0.10724406190479385
KLVQQIAPE	9	Unmodified	_KLVQQIAPE_					0	0	0			REV__ENST00000467738.1_1_3:58490953-58512473:-|nuORF	REV__ENST00000467738.1_1_3:58490953-58512473:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.228271484375	2	513.303124	1024.5917	1.0105	0.0005187	1.0936	0.00056136	2.1041	0.0010801	513.8049947049573	139.04	0.53313	139.04	138.88	139.41	0					14	10	2	0	0	0	0.027462	1	16237	16237		20.947	0	1	25807	+		24822	21361	20298	20322	27667	27667					0.0803831599437217
KLVSHLLASFG	11	Unmodified	_KLVSHLLASFG_					0	0	0			REV__nc|ENSG00000074527|Q9HB63-2|NTN4	REV__nc|ENSG00000074527|Q9HB63-2|NTN4	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.3416137695312	2	586.345323	1170.67609	2.9833	0.0017493	1.9744	0.0011577	4.9578	0.002907	586.346427535182	97.422	0.47609	97.422	97.135	97.611	0					15	10	2	0	0	0	0.025377	1	10664	10664		39.253	0	1	523140	+		24823	28732	20299	20323	27668	27668					0.09758266811127214
KLVTPETPENA	11	Unmodified	_KLVTPETPENA_					0	0	0		nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-4|SVIL	nc|ENSG00000197321|O95425-4|SVIL	MULTI-MSMS	OvCa9_classI_Rep4_	4	599.8182373046875	2	599.819335	1197.62412	-1.1076	-0.00066435	0.069748	4.1836E-05	-1.0378	-0.00062251	599.8192487744778	107.3	1.3951	105.43	105.12	106.51	-1.8785					54	27	4	0	0	0	0.7046	1	9792	9792		28.081	10.613	1	348230			24824	8700	20300	20324	27669	27669					0.033210586067070835
KLVYKKVD	8	Unmodified	_KLVYKKVD_					0	0	0		tr|A0A7D6VNP8|A0A7D6VNP8_9CLOTGlycosyltransferasefamily4proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18770PE=4SV=1	tr|A0A7D6VNP8|A0A7D6VNP8_9CLOTGlycosyltransferasefamily4proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18770PE=4SV=1	tr|A0A7D6VNP8|A0A7D6VNP8_9CLOTGlycosyltransferasefamily4proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18770PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	496.76123046875	2	496.810585	991.606617	-0.43339	-0.00021531	-0.25009	-0.00012425	-0.68349	-0.00033956	496.81021440106656	74.148	0.57709	72.177	71.957	72.534	-1.9711					16	10	2	0	0	0	0.028476	1	6037	6037		12.207	0	1	22999			24825	34722	20301	20325	27670	27670					0.1104780786236006
KLVYKYLE	8	Unmodified	_KLVYKYLE_					0	0	0			REV__nc|ENSG00000152061|Q5R372-2|RABGAP1L	REV__nc|ENSG00000152061|Q5R372-2|RABGAP1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.2723388671875	2	528.310418	1054.60628	1.9831	0.0010477	-0.77552	-0.00040971	1.2075	0.00063795	528.3098512546688	110.43	0.7142	110.43	110.27	110.98	0					21	15	2	0	0	0	0.028476	1	12527	12527		42.474	12.157	1	334950	+		24826	28929	20302	20326	27671	27671					0.08116388142502728
KLVYKYLE	8	Unmodified	_KLVYKYLE_					0	0	0			REV__nc|ENSG00000152061|Q5R372-2|RABGAP1L	REV__nc|ENSG00000152061|Q5R372-2|RABGAP1L	MULTI-MATCH	OvCa9_classI_Rep2	2		2	528.310418	1054.60628	-0.27602	-0.00014583	-5.6833	-0.0030025	-5.9593	-0.0031484	528.80674073458	110.82	1.0375	110.68	110.19	111.23	-0.13961	0.12715	-0.004762	NaN	42.474	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26788	+		24827	28929	20302	20326							0.08116388142502728
KLVYLHLI	8	Unmodified	_KLVYLHLI_					0	0	0		tr|A0A553SQR5|A0A553SQR5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07140PE=4SV=1	tr|A0A553SQR5|A0A553SQR5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07140PE=4SV=1	tr|A0A553SQR5|A0A553SQR5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07140PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.74249267578125	2	499.823495	997.632438	-1.51	-0.00075475	-3.758	-0.0018784	-5.2681	-0.0026331	499.8216696175113	118.53	0.89183	117.18	116.89	117.78	-1.3444					25	16	2	0	0	0	0.028476	1	11130	11130		26.796	0	1	22110			24828	34189	20303	20327	27672	27672					0.1335270210464614
KLVYLHLI	8	Unmodified	_KLVYLHLI_					0	0	0		tr|A0A553SQR5|A0A553SQR5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07140PE=4SV=1	tr|A0A553SQR5|A0A553SQR5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07140PE=4SV=1	tr|A0A553SQR5|A0A553SQR5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07140PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	499.823495	997.632438	-1.4179	-0.00070872	-3.8805	-0.0019396	-5.2984	-0.0026483	499.8214784717999	117.18	0.49434	117.06	116.91	117.41	-0.12868	-0.06221	-8.9055E-05	NaN	26.796	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8557.3			24829	34189	20303	20327							0.1335270210464614
KLVYNALET	9	Unmodified	_KLVYNALET_					0	0	0		nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;ENSG00000128829|ENST00000263791|EIF2AK4;EIF2AK4|p.D1266Ifs*9|1|0.12|ENSG00000128829|chr15:40016537-40016537|A/-|frameshift_variant;nc|ENSG00000128829|Q9P2K8-3|EIF2AK4	nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.7962036132812	2	525.795132	1049.57571	-0.73438	-0.00038613	0.27628	0.00014527	-0.45809	-0.00024086	525.7951211270889	58.817	0.85225	55.425	55.101	55.953	-3.392					50	16	4	0	0	0	0.51865	1	3905	3905		40.778	0	1	512100			24830	3906	20304	20328	27673	27673					0.05290609757457787
KLWDIINVNI	10	Unmodified	_KLWDIINVNI_					0	0	0		ENSG00000103160|ENST00000219439|HSDL1;nc|ENSG00000103160|Q3SXM5-2|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	MULTI-MSMS	OvCa99_classI_Rep5	1	614.3609619140625	2	614.358431	1226.70231	1.3073	0.00080317	0.51984	0.00031937	1.8272	0.0011225	614.3587402192735	143.84	1.2844	143.84	143.22	144.5	0					64	25	5	0	0	0	0.065922	2	16802	16802;16826		123.21	40.458	1	1493800			24831	2288	20305	20329	27674;27675	27674					0.09802535982635163
KLWFPSKL	8	Unmodified	_KLWFPSKL_					0	0	0		nc|ENSG00000133640|Q96JM4-2|LRRIQ1;ENSG00000133640|ENST00000393217|LRRIQ1	nc|ENSG00000133640|Q96JM4-2|LRRIQ1	nc|ENSG00000133640|Q96JM4-2|LRRIQ1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.7867431640625	2	509.807845	1017.60114	-0.95117	-0.00048491	3.4377	0.0017526	2.4866	0.0012677	509.80939272294665	80.669	1.0251	77.958	77.615	78.641	-2.7106					49	20	3	0	0	0	0.028476	1	6608	6608		35.618	0	1	329350			24832	4229	20306	20330	27676	27676					0.09304129070551426
KLWGQSIQL	9	Unmodified	_KLWGQSIQL_					0	0	0		ENSG00000116668|ENST00000367500|SWT1	ENSG00000116668|ENST00000367500|SWT1	ENSG00000116668|ENST00000367500|SWT1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.81494140625	2	536.811116	1071.60768	0.079826	4.2852E-05	0.99271	0.0005329	1.0725	0.00057575	536.8109860501737	105.33	0.6152	105.33	105.04	105.66	0					34	13	4	0	0	0	0.1804	1	11832	11832		79.713	24.936	1	1705800			24833	3192	20307	20331	27677	27677					0.07474022231281197
KLWHSGEL	8	Unmodified	_KLWHSGEL_					0	0	0			REV__tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1	REV__tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.2709045410156	2	485.261259	968.507966	-0.88888	-0.00043134	-2.743	-0.0013311	-3.6319	-0.0017624	485.2598494117237	53.551	1.2272	50.343	50.097	51.324	-3.208					60	23	3	0	0	0	0.028476	1	3253	3253		40.573	10.069	1	324480	+		24834	31524	20308	20332	27678	27678					0.022452046173384588
KLWLCNMI	8	Unmodified	_KLWLCNMI_					0	0	0		nc|ENSG00000123901|Q9NYM4-2|GPR83;ENSG00000123901|ENST00000243673|GPR83	nc|ENSG00000123901|Q9NYM4-2|GPR83	nc|ENSG00000123901|Q9NYM4-2|GPR83	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.23626708984375	2	510.772091	1019.52963	0.88952	0.00045434	-1.9119	-0.00097655	-1.0224	-0.00052221	510.7713551342366	66.917	0.43604	66.917	66.7	67.136	0					13	10	2	0	0	0	0.028476	1	6209	6209		38.806	17.12	1	274350			24835	3616	20309	20333	27679	27679					0.02064550050033631
KLWLTKEV	8	Unmodified	_KLWLTKEV_					0	0	0			REV__ENSG00000116906|ENST00000366647|GNPAT	REV__ENSG00000116906|ENST00000366647|GNPAT	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.271240234375	2	508.810585	1015.60662	-0.3595	-0.00018292	3.838	0.0019528	3.4784	0.0017699	508.8144916640961	53.112	0.51873	53.112	52.956	53.475	0					22	11	3	0	0	0	0.028476	1	4223	4223		35.618	11.416	1	241710	+		24836	18326	20310	20334	27680	27680					0.09943807862373433
KLWQTPLHV	9	Unmodified	_KLWQTPLHV_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52;ENST00000551023.1_1_12:56648058-56650843:-|nuORF	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	MULTI-MSMS	OvCa99_classI_Rep5	1	561.3275146484375	2	561.326934	1120.63931	2.3154	0.0012997	-0.62553	-0.00035113	1.6898	0.00094854	561.3264678726624	87.561	0.83	87.561	87.257	88.087	0					42	19	4	0	0	0	0.22621	1	9286	9286		71.877	17.101	1	2194800			24837	4794	20311	20335	27681	27681					0.08382014985227215
KLWRKTEQDKK	11	Unmodified	_KLWRKTEQDKK_					0	0	0			REV__CHD1|p.D670Vfs*3|1|0.07|ENSG00000153922|chr5:98892696-98892697|-/A|frameshift_variant	REV__CHD1|p.D670Vfs*3|1|0.07|ENSG00000153922|chr5:98892696-98892697|-/A|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.6400451660156	3	487.284175	1458.8307	-0.12047	-5.8703E-05	-2.1666	-0.0010557	-2.287	-0.0011144	487.2830398624971	20.344	0.96741	19.006	18.803	19.77	-1.3386					36	19	3	0	0	0	0.026302	1	90	90		22.562	4.0305	1	52543	+		24838	15786	20312	20336	27682	27682					0.11963471225658395
KLYAMFLSL	9	Unmodified	_KLYAMFLSL_					0	0	0		POLA1-TSPAN7|1|fusion;ENSG00000156298|ENST00000378482|TSPAN7;chrX:38561627-38646262|322|14.97|0.5|4.92|+|ENST00000286824|TSPAN7,TSPAN7;ENST00000471410.5_1_X:38422267-38546918:+|nuORF	POLA1-TSPAN7|1|fusion;ENSG00000156298|ENST00000378482|TSPAN7;ENST00000471410.5_1_X:38422267-38546918:+|nuORF	POLA1-TSPAN7|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.79541015625	2	543.306821	1084.59909	2.4366	0.0013238	2.9898	0.0016244	5.4264	0.0029482	543.3083581372982	108.09	0.63771	108.09	107.86	108.5	0					33	14	3	0	0	0	0.027461	1	12266	12266		49.442	7.0454	1	1979100			24839	15511;568;12381	20313	20337	27683	27683					0.060173322704486054
KLYAMFLSL	9	Unmodified	_KLYAMFLSL_					0	0	0		POLA1-TSPAN7|1|fusion;ENSG00000156298|ENST00000378482|TSPAN7;chrX:38561627-38646262|322|14.97|0.5|4.92|+|ENST00000286824|TSPAN7,TSPAN7;ENST00000471410.5_1_X:38422267-38546918:+|nuORF	POLA1-TSPAN7|1|fusion;ENSG00000156298|ENST00000378482|TSPAN7;ENST00000471410.5_1_X:38422267-38546918:+|nuORF	POLA1-TSPAN7|1|fusion	MULTI-MATCH	OvCa9_classI_Rep3	3		2	543.306821	1084.59909	0.022393	1.2166E-05	6.8139	0.003702	6.8363	0.0037142	543.3094425033072	109.2	0.47483	108	107.72	108.19	-1.1978	-0.044055	0.0038902	NaN	58.782	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9968.5			24840	15511;568;12381	20313	20337							0.060173322704486054
KLYDGFQYL	9	Unmodified	_KLYDGFQYL_					0	0	0		ENSG00000143393|ENST00000368873|PI4KB;nc|ENSG00000143393|Q9UBF8-2|PI4KB;nc|ENSG00000143393|Q9UBF8-3|PI4KB	ENSG00000143393|ENST00000368873|PI4KB	ENSG00000143393|ENST00000368873|PI4KB	MULTI-MSMS	OvCa99_classI_Rep5	1	573.796142578125	2	573.795132	1145.57571	1.1009	0.00063169	0.93307	0.00053539	2.034	0.0011671	573.7955545151079	111.42	0.90581	111.42	111.11	112.02	0					50	19	4	0	0	0	0.075543	2	12653	12653;12677		104.06	16.36	1	1783600			24841	5050	20314	20338	27684;27685	27684					0.008746097574885425
KLYEQHHVV	9	Unmodified	_KLYEQHHVV_					0	0	0		ENSG00000116133|ENST00000371269|DHCR24;nc|ENSG00000116133|Q15392-2|DHCR24;chr1:54854126-54871350|118|127.58|0.01|13.9|-|0|None,DHCR24|1	ENSG00000116133|ENST00000371269|DHCR24	ENSG00000116133|ENST00000371269|DHCR24	MULTI-MSMS	OvCa99_classI_Rep5	1	576.8111572265625	2	576.811648	1151.60874	-0.88388	-0.00050983	0.48118	0.00027755	-0.40271	-0.00023229	576.8117349354079	37.829	0.58617	37.829	37.621	38.207	0					28	12	3	0	0	0	0.21231	1	2108	2108		74.255	17.534	1	604540			24842	3157	20315	20339	27686	27686					0.03900236600156859
KLYGFPYKIPA	11	Unmodified	_KLYGFPYKIPA_					0	0	0		ENSG00000144635|ENST00000273130|DYNC1LI1;ENST00000481915.5_1_3:32574447-32611850:-|nuORF	ENSG00000144635|ENST00000273130|DYNC1LI1	ENSG00000144635|ENST00000273130|DYNC1LI1	MULTI-MSMS	OvCa9_classI_Rep2	2	432.91607666015625	3	432.916541	1295.72779	-1.1041	-0.00047799	-2.0409	-0.00088354	-3.145	-0.0013615	432.9158567399814	54.785	2.7829	51.971	51.473	54.256	-2.8139					169	55	5	0	0	0	0.68709	1	3808	3808		34.087	5.5098	1	2816800			24843	5166	20316	20340	27687	27687					0.09176010505052545
KLYGKPIRV	9	Unmodified	_KLYGKPIRV_					0	0	0		ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	MULTI-MSMS	OvCa99_classI_Rep5	1	537.3450317382812	2	537.345126	1072.6757	0.080828	4.3433E-05	-0.53767	-0.00028892	-0.45685	-0.00024548	537.344784105845	46.566	1.2232	46.566	46.284	47.508	0					70	27	4	0	0	0	0.21231	1	3298	3298		74.255	10.949	1	4917900			24844	5042	20317	20341	27688	27688					0.14226891881935444
KLYHMTLS	8	Unmodified	_KLYHMTLS_					0	0	0			REV__ENSG00000203995|ENST00000371528|ZYG11A	REV__ENSG00000203995|ENST00000371528|ZYG11A	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.77618408203125	2	496.76532	991.516088	0.76006	0.00037757	3.0174	0.0014989	3.7775	0.0018765	496.76570367667176	157.73	0.50366	157.73	157.55	158.05	0					15	9	2	0	0	0	0.028476	1	18467	18467		18.324	0	1	27185	+		24845	23120	20318	20342	27689	27689					0.01999015542446614
KLYIVSAFGYH	11	Unmodified	_KLYIVSAFGYH_					0	0	0			REV__ENSG00000171942|ENST00000305899|OR10H2	REV__ENSG00000171942|ENST00000305899|OR10H2	MULTI-MSMS	OvCa99_classI_Rep5	1	649.3560791015625	2	649.350606	1296.68666	1.8902	0.0012274	0.51985	0.00033757	2.4101	0.001565	649.3508931970288	135.01	2.7966	135.01	134.65	137.45	0					102	59	2	0	0	0	0.4646	1	15837	15837		56.434	10.462	1	8858500	+		24846	21661	20319	20343	27690	27690					0.05018249465570079
KLYKELTFH	9	Unmodified	_KLYKELTFH_					0	0	0		tr|A0A553SUE0|A0A553SUE0_NIACIasparaginesynthase(glutamine-hydrolyzing)OS=NialliacirculansOX=1397GN=CEQ21_06805PE=3SV=1	tr|A0A553SUE0|A0A553SUE0_NIACIasparaginesynthase(glutamine-hydrolyzing)OS=NialliacirculansOX=1397GN=CEQ21_06805PE=3SV=1	tr|A0A553SUE0|A0A553SUE0_NIACIasparaginesynthase(glutamine-hydrolyzing)OS=NialliacirculansOX=1397GN=CEQ21_06805PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	589.8299560546875	2	589.832049	1177.64954	-0.44507	-0.00026252	-3.7154	-0.0021915	-4.1605	-0.002454	589.8299064770205	44.596	1.7616	44.596	44.35	46.112	0					85	39	5	0	0	0	0.22621	1	3061	3061		71.877	7.6702	1	14876000			24847	34599	20320	20344	27691	27691					0.06782577919784671
KLYKNEKEL	9	Unmodified	_KLYKNEKEL_					0	0	0			REV__nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	REV__nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	MULTI-MSMS	OvCa9_classI_Rep4_	4	582.8309936523438	2	582.834788	1163.65502	-2.8571	-0.0016652	-1.0225	-0.00059595	-3.8796	-0.0022611	582.8339329701962	148.76	1.2959	147.32	146.58	147.87	-1.4344					39	26	2	0	0	0	0.64427	1	14628	14628		26.693	1.1189	1	13451	+		24848	23563	20321	20345	27692	27692					0.07974256711622729
KLYKNEKEL	9	Unmodified	_KLYKNEKEL_					0	0	0			REV__nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	REV__nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	MULTI-MATCH	OvCa9_classI_Rep2	2		2	582.834788	1163.65502	-2.695	-0.0015707	-0.62571	-0.00036469	-3.3207	-0.0019354	582.8342195028566	147.15	0.65166	146.92	146.52	147.17	-0.22696	-0.22359	-0.0009905	NaN	26.693	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9494.4	+		24849	23563	20321	20345							0.07974256711622729
KLYKNEKEL	9	Unmodified	_KLYKNEKEL_					0	0	0			REV__nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	REV__nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	MULTI-MATCH	OvCa9_classI_Rep3	3		2	582.834788	1163.65502	-5.2033	-0.0030327	1.2893	0.00075147	-3.914	-0.0022812	582.835449469807	148.14	2.553	147.19	146.55	149.11	-0.9512	0.043697	0.0012418	NaN	26.693	65	47	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17639	+		24850	23563	20321	20345							0.07974256711622729
KLYKNEKEL	9	Unmodified	_KLYKNEKEL_					0	0	0			REV__nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	REV__nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	582.834788	1163.65502	-2.8571	-0.0016652	-1.0225	-0.00059595	-3.8796	-0.0022611	582.8339329701962	148.76	1.2959	147.32	146.58	147.87	-1.4344	0.1799	-0.001453	NaN	26.693	39	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13451	+		24851	23563	20321	20345							0.07974256711622729
KLYKRERAQKR	11	Unmodified	_KLYKRERAQKR_					0	0	0		nc|ENSG00000066230|P48764-2|SLC9A3;ENSG00000066230|ENST00000264938|SLC9A3	nc|ENSG00000066230|P48764-2|SLC9A3	nc|ENSG00000066230|P48764-2|SLC9A3	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.6335754394531	3	492.635431	1474.88446	-6.2167	-0.0030626	3.9861	0.0019637	-2.2306	-0.0010989	492.6373104493484	162.25	1.447	160.62	160.35	161.8	-1.6239					85	40	3	0	0	0	0.72548	1	16015	16015		9.2118	2.8909	1	49551			24852	1346	20322	20346	27693	27693					0.1660168844805412
KLYLILEYL	9	Unmodified	_KLYLILEYL_					0	0	0		ENST00000472940.5_1_17:58003798-58008230:+|nuORF;ENST00000441215.2_1_17:20619798-20628177:+|nuORF;ENST00000577881.1_1_17:60316192-60324457:-|nuORF;ENST00000489824.1_1_17:57971183-58007752:+|nuORF;RPS6KB1-VMP1|5|fusion;nc|ENSG00000108443|P23443-4|RPS6KB1;nc|ENSG00000108443|P23443-3|RPS6KB1;RPS6KB1-VMP1|10|fusion;nc|ENSG00000108443|P23443-5|RPS6KB1;nc|ENSG00000108443|P23443-2|RPS6KB1;ENSG00000108443|ENST00000225577|RPS6KB1	ENST00000472940.5_1_17:58003798-58008230:+|nuORF	ENST00000472940.5_1_17:58003798-58008230:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3564453125	2	584.354825	1166.6951	-1.7162	-0.0010029	4.4897	0.0026236	2.7735	0.0016207	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.68424	1	14258	14258		21.96	0.27414	1	833330			24853	12401	20323	20347	27694	27694					0.1184180338218539
KLYLLLVII	9	Unmodified	_KLYLLLVII_					0	0	0			REV__ENSG00000131724|ENST00000371666|IL13RA1	REV__ENSG00000131724|ENST00000371666|IL13RA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.8178100585938	2	544.378103	1086.74165	0.88597	0.0004823	-4.4057	-0.0023984	-3.5197	-0.001916	544.8776336618412	83.38	0.21057	83.38	83.293	83.504	0					5	4	2	0	0	0	0.027462	1	8686	8686		3.9852	0	1	60010	+		24854	19030	20324	20348	27695	27695					0.20175288004134018
KLYMQLIPQ	9	Unmodified	_KLYMQLIPQ_					0	0	0		ENSG00000104960|ENST00000391842|PTOV1;nc|ENSG00000104960|Q86YD1-2|PTOV1;nc|ENSG00000104960|Q86YD1-3|PTOV1;ENST00000596424.1_1_19:50360315-50362048:+|nuORF	ENSG00000104960|ENST00000391842|PTOV1	ENSG00000104960|ENST00000391842|PTOV1	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.8235473632812	2	567.323002	1132.63145	0.11473	6.5087E-05	0.81318	0.00046134	0.92791	0.00052642	567.3234668393623	69.244	0.57455	69.244	68.858	69.433	0					22	13	3	0	0	0	0.027433	1	6578	6578		60.972	7.6205	1	468630			24855	2411	20325	20349	27696	27696					0.07044119673446403
KLYNWLRV	8	Unmodified	_KLYNWLRV_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-SECPEP	OvCa9_classI_Rep2	2	546.2984008789062	2	546.321651	1090.62875	0.33778	0.00018453	-4.1146	-0.0022479	-3.7769	-0.0020634	546.3194200006376	71.871	0.78482	69.364	68.91	69.695	-2.5072					29	14	3	0	0	0	0.028476	1	5809	5809		42.474	0	1	78062			24856	2700	20326	20350	27697	27697					0.08706032330792368
KLYRDKLS	8	Unmodified	_KLYRDKLS_					0	0	0			REV__ENSG00000166848|ENST00000300086|TERF2IP	REV__ENSG00000166848|ENST00000300086|TERF2IP	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.7809753417969	2	511.803291	1021.59203	-0.18555	-9.4965E-05	1.2687	0.00064934	1.0832	0.00055438	511.80520418385265	58.713	0.23996	58.713	58.572	58.812	0					8	5	2	0	0	0	0.028476	1	4990	4990		7.6903	0	1	58983	+		24857	21226	20327	20351	27698	27698					0.08209735714228827
KLYRRRLQ	8	Unmodified	_KLYRRRLQ_					0	0	0		ENST00000370558.8_1_1:87188238-87189997:+|nuORF	ENST00000370558.8_1_1:87188238-87189997:+|nuORF	ENST00000370558.8_1_1:87188238-87189997:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.8134765625	2	566.856724	1131.69889	2.8555	0.0016187	2.0071	0.0011377	4.8626	0.0027564	566.8578158472187	96.16	0.38187	96.16	95.956	96.338	0					14	8	2	0	0	0	0.028476	1	10518	10518		18.324	0	1	157430			24858	10934	20328	20352	27699	27699					0.13831330719267498
KLYSGSADCTI	11	Unmodified	_KLYSGSADCTI_					0	0	0		nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.83984375	2	579.278989	1156.54342	-0.70604	-0.000409	2.0931	0.0012125	1.3871	0.00080351	579.2801904759762	58.906	0.42407	58.906	58.696	59.12	0					25	10	3	0	0	0	0.025457	1	5010	5010		36.447	0	1	1159400			24859	4081	20329	20353	27700	27700					-0.028585457078406762
KLYSVIQDI	9	Unmodified	_KLYSVIQDI_					0	0	0			REV__tr|A0A7D6VNZ0|A0A7D6VNZ0_9CLOTAdeninephosphoribosyltransferaseOS=ClostridiumintestinaleOX=36845GN=aptPE=3SV=1	REV__tr|A0A7D6VNZ0|A0A7D6VNZ0_9CLOTAdeninephosphoribosyltransferaseOS=ClostridiumintestinaleOX=36845GN=aptPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.2938842773438	2	539.810782	1077.60701	1.7904	0.0009665	2.255	0.0012173	4.0454	0.0021838	539.8119823321584	77.902	0.54927	77.902	77.544	78.093	0					19	12	2	0	0	0	0.027462	1	7882	7882		23.523	0	1	749810	+		24860	31214	20330	20354	27701	27701					0.07131182791590618
KLYTVSRR	8	Unmodified	_KLYTVSRR_					0	0	0			REV__ARMC9-PSMD1|2|fusion	REV__ARMC9-PSMD1|2|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.7935180664062	2	511.808908	1021.60326	0.15751	8.0615E-05	-0.3552	-0.0001818	-0.19769	-0.00010118	511.8087663874114	60.691	1.0418	57.261	56.553	57.594	-3.43					45	20	3	0	0	0	0.028476	1	4085	4085		35.618	13.658	1	44457	+		24861	15663	20331	20355	27702	27702					0.09332557808386355
KLYYDKRWYHK	11	Unmodified	_KLYYDKRWYHK_					0	0	0		ENSG00000111707|ENST00000543473|SUDS3	ENSG00000111707|ENST00000543473|SUDS3	ENSG00000111707|ENST00000543473|SUDS3	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.5757141113281	4	400.716222	1598.83578	0.71321	0.0002858	-0.32021	-0.00012831	0.393	0.00015748	400.7164225131981	26.06	0.19884	26.06	25.943	26.142	0					5	3	2	0	0	0	0.026497	1	640	640		6.001	2.382	1	15639			24862	2845	20332	20356	27703	27703					0.060317750883086774
KMALNYQSKS	10	Unmodified	_KMALNYQSKS_					0	0	0		ENSG00000068650|ENST00000375645|ATP11A;ATP11A|p.Y504*|1|0.3|ENSG00000068650|chr13:112832976-112832976|C/-|frameshift_variant;ENST00000459908.5_1_13:113439469-113512287:+|nuORF	ENSG00000068650|ENST00000375645|ATP11A	ENSG00000068650|ENST00000375645|ATP11A	MULTI-MSMS	OvCa9_classI_Rep3	3	585.296630859375	2	585.302798	1168.59104	-7.712	-0.0045139	-1.7961	-0.0010513	-9.5081	-0.0055651	585.3015077710636	157.9	1.5857	156.73	156.12	157.71	-1.1707					60	43	3	0	0	0	0.81208	1	13637	13637		17.468	0.75062	1	24039			24863	1393	20333	20357	27704	27704					0.013491532830130382
KMALVTPVV	9	Unmodified	_KMALVTPVV_					0	0	0			REV__ENST00000448052.1_1_1:84551619-84551913:+|nuORF	REV__ENST00000448052.1_1_1:84551619-84551913:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	479.295166015625	2	479.293714	956.572874	-0.39946	-0.00019146	4.274	0.0020485	3.8746	0.0018571	479.2956154833274	38.371	0.36926	38.371	38.207	38.576	0					17	7	3	0	0	0	0.40667	1	2186	2186		51.335	1.8939	1	177940	+		24864	25928	20334	20358	27705	27705					0.0928506309895738
KMARLRYM	8	2 Oxidation (M)	_KM(Oxidation (M))ARLRYM(Oxidation (M))_		KM(1)ARLRYM(1)		KM(75)ARLRYM(75)	0	0	2		ENST00000557188.1_1_14:36840618-36841095:+|nuORF;ENSG00000187569|ENST00000345088|DPPA3	ENST00000557188.1_1_14:36840618-36841095:+|nuORF	ENST00000557188.1_1_14:36840618-36841095:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.792236328125	2	550.788804	1099.56305	-0.99194	-0.00054635	3.2655	0.0017986	2.2735	0.0012522	550.7905726667109	92.751	1.2117	90.243	89.959	91.171	-2.5072					61	24	4	0	0	0	0.52992	1	8074	8074		74.517	7.0229	1	722160			24865	8414	20335	20359	27706	27706		254;255			0.01725551821937188
KMARLRYM	8	2 Oxidation (M)	_KM(Oxidation (M))ARLRYM(Oxidation (M))_					0	0	2		ENST00000557188.1_1_14:36840618-36841095:+|nuORF;ENSG00000187569|ENST00000345088|DPPA3	ENST00000557188.1_1_14:36840618-36841095:+|nuORF	ENST00000557188.1_1_14:36840618-36841095:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	550.788804	1099.56305	1.5643	0.0008616	0.93406	0.00051447	2.4984	0.0013761	550.7892866336678	91.461	1.4785	90.225	89.848	91.326	-1.2355	0.022685	-0.00097016	NaN	74.517	66	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	461860			24866	8414	20335	20359				254;255			0.01725551821937188
KMARLRYM	8	2 Oxidation (M)	_KM(Oxidation (M))ARLRYM(Oxidation (M))_					0	0	2		ENST00000557188.1_1_14:36840618-36841095:+|nuORF;ENSG00000187569|ENST00000345088|DPPA3	ENST00000557188.1_1_14:36840618-36841095:+|nuORF	ENST00000557188.1_1_14:36840618-36841095:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	550.788804	1099.56305	-1.6485	-0.00090796	2.7819	0.0015322	1.1334	0.00062426	550.790174721348	92.163	1.4281	90.139	89.788	91.216	-2.0241	-0.063431	0.0010654	NaN	74.517	56	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	864600			24867	8414	20335	20359				254;255			0.01725551821937188
KMASARGTV	9	Unmodified	_KMASARGTV_					0	0	0			REV__ENST00000605608.1_1_11:75480015-75484828:+|nuORF	REV__ENST00000605608.1_1_11:75480015-75484828:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	460.75238037109375	2	460.752744	919.490935	-0.46441	-0.00021398	-2.9292	-0.0013496	-3.3936	-0.0015636	460.75123071743485	50.782	0.57064	50.782	50.465	51.036	0					21	12	3	0	0	0	0.3076	1	3882	3882		62.107	1.1355	1	910020	+		24868	28067	20336	20360	27707	27707					0.027969607398858898
KMASARGTV	9	Unmodified	_KMASARGTV_					0	0	0			REV__ENST00000605608.1_1_11:75480015-75484828:+|nuORF	REV__ENST00000605608.1_1_11:75480015-75484828:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	460.752744	919.490935	-0.46441	-0.00021398	-2.9292	-0.0013496	-3.3936	-0.0015636	460.75123071743485	50.782	0.57064	50.782	50.465	51.036	0	0	0	NaN	62.107	21	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	910020	+		24869	28067	20336	20360							0.027969607398858898
KMAYPLDET	9	Unmodified	_KMAYPLDET_					0	0	0			REV__ENSG00000147383|ENST00000370274|NSDHL	REV__ENSG00000147383|ENST00000370274|NSDHL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.7989501953125	2	534.257525	1066.5005	-1.007	-0.00053799	0.54635	0.00029189	-0.46063	-0.00024609	534.2576344261406	66.75	0.54105	63.26	63.049	63.59	-3.4902					17	10	2	0	0	0	0.027462	1	4851	4851		37.159	16.212	1	24049	+		24870	20060	20337	20361	27708	27708					-0.030093157652800073
KMCDAFLSEVG	11	Unmodified	_KMCDAFLSEVG_					0	0	0			REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8	REV__nc|ENSG00000189195|Q5XKL5-4|BTBD8	MULTI-MSMS	OvCa9_classI_Rep2	2	600.2721557617188	2	600.275392	1198.53623	-5.4228	-0.0032552	-0.30425	-0.00018263	-5.7271	-0.0034378	600.2750319043287	159.18	1.1999	158.96	158.63	159.83	-0.22697					79	23	5	0	0	0	0.69455	1	16203	16203		31.53	0	1	203880	+		24871	29069	20338	20362	27709	27709					-0.05509601579933587
KMDESKHEI	9	Unmodified	_KMDESKHEI_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.D1277Afs*54|1|0.12|ENSG00000137076|chr9:35711644-35711645|-/G|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OvCa99_classI_Rep5	1	558.7708740234375	2	558.771331	1115.52811	0.20162	0.00011266	-0.32592	-0.00018212	-0.12431	-6.946E-05	558.771341374205	29.961	0.54948	29.961	29.735	30.285	0					36	10	5	0	0	0	0.084918	2	1108	1108;1133		101.25	19.012	1	3902000			24872	4552	20339	20363	27710;27711	27710					-0.025034125050069633
KMDKRLMF	8	Unmodified	_KMDKRLMF_					0	0	0			REV__ENSG00000206530|ENST00000393845|CFAP44	REV__ENSG00000206530|ENST00000393845|CFAP44	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.8478393554688	2	534.788272	1067.56199	-0.98807	-0.00052841	0.10842	5.7981E-05	-0.87965	-0.00047043	534.7882079561521	47.213	0.91182	44.14	43.911	44.823	-3.0724					27	17	3	0	0	0	0.028476	1	2501	2501		28.254	0	1	105230	+		24873	23240	20340	20364	27712	27712					0.030913374530427973
KMEFDELE	8	Unmodified	_KMEFDELE_					0	0	0			REV__nc|ENSG00000285292|Q9UG63-2|ABCF2	REV__nc|ENSG00000285292|Q9UG63-2|ABCF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.3123168945312	2	520.733883	1039.45321	1.2056	0.00062779	3.8078	0.0019828	5.0134	0.0026106	520.7353477592494	79.435	0.46547	79.435	79.276	79.741	0					20	11	3	0	0	0	0.028476	1	8146	8146		45.952	21.749	1	655990	+		24874	16592	20341	20365	27713	27713					-0.06493595036272382
KMELSTLQSL	10	Unmodified	_KMELSTLQSL_					0	0	0			REV__ENSG00000185900|ENST00000331373|POMK	REV__ENSG00000185900|ENST00000331373|POMK	MULTI-MSMS	OvCa9_classI_Rep2	2	575.3090209960938	2	575.312832	1148.61111	-1.1239	-0.00064659	-3.0746	-0.0017689	-4.1985	-0.0024155	575.3111142499293	98.321	3.118	97.428	96.974	100.09	-0.89306					184	62	6	0	0	0	0.079666	1	8914	8914		118.74	6.3322	1	5141200	+		24875	22542	20342	20366	27714	27714					0.042749042229843326
KMETVVTSPM	10	Unmodified	_KMETVVTSPM_					0	0	0		ENSG00000173599|ENST00000393960|PC;ENST00000528224.1_1_11:66616372-66617354:-|nuORF	ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	MULTI-MSMS	OvCa9_classI_Rep3	3	561.7777709960938	2	561.78031	1121.54607	-1.3592	-0.00076357	-1.8937	-0.0010639	-3.2529	-0.0018274	561.7792444049404	136.22	0.83698	135.12	134.85	135.69	-1.1076					32	16	3	0	0	0	0.70152	1	11056	11056		30.318	2.2362	1	51102			24876	7394	20343	20367	27715	27715					-0.009844135745424865
KMFRRWRKLRK	11	Unmodified	_KMFRRWRKLRK_					0	0	0		tr|A0A553SIF0|A0A553SIF0_NIACINa+/H+antiporterOS=NialliacirculansOX=1397GN=CEQ21_14735PE=3SV=1	tr|A0A553SIF0|A0A553SIF0_NIACINa+/H+antiporterOS=NialliacirculansOX=1397GN=CEQ21_14735PE=3SV=1	tr|A0A553SIF0|A0A553SIF0_NIACINa+/H+antiporterOS=NialliacirculansOX=1397GN=CEQ21_14735PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.662109375	3	535.664668	1603.97217	-7.3601	-0.0039425	-0.98537	-0.00052783	-8.3455	-0.0044704	535.6641448738158	164.14	0.24614	162.51	162.36	162.61	-1.6336					8	5	2	0	0	0	0.026551	1	16216	16216		1.4188	0	1	136170			24877	33375	20344	20368	27716	27716					0.19434610837811306
KMFTMAQKLL	10	Unmodified	_KMFTMAQKLL_					0	0	0			REV__nc|ENSG00000005436|P16383-2|GCFC2	REV__nc|ENSG00000005436|P16383-2|GCFC2	MULTI-SECPEP	OvCa9_classI_Rep2	2	404.57086181640625	3	404.227734	1209.66137	0.45067	0.00018217	-2.2584	-0.00091289	-1.8077	-0.00073072	404.22651665862935	49.622	0.74269	46.861	46.473	47.216	-2.7603					22	14	2	0	0	0	0.026826	1	3187	3187		44.377	3.599	1	17588	+		24878	16401	20345	20369	27717	27717					0.06492735347114831
KMGNRSSKT	9	Unmodified	_KMGNRSSKT_					0	0	0			REV__ENST00000427153.1_1_7:73149705-73150146:+|nuORF	REV__ENST00000427153.1_1_7:73149705-73150146:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.2367248535156	2	504.766383	1007.51821	-0.44116	-0.00022269	0.40673	0.00020531	-0.034432	-1.738E-05	504.766300914729	40.561	0.37239	40.561	40.247	40.619	0					11	7	2	0	0	0	0.027426	1	2461	2461		39.253	6.4404	1	48967	+		24879	25676	20346	20370	27718	27718					0.014754442802541234
KMGVTSILPF	10	Unmodified	_KMGVTSILPF_					0	0	0		ENST00000265138.3_1_5:90665357-90665525:-|nuORF	ENST00000265138.3_1_5:90665357-90665525:-|nuORF	ENST00000265138.3_1_5:90665357-90665525:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.7814331054688	2	546.809728	1091.6049	-1.993	-0.0010898	1.3371	0.00073116	-0.65591	-0.00035866	546.8119651793212	103.77	0.38213	103.77	103.6	103.98	0					10	8	2	0	0	0	0.026982	1	11596	11596		30.504	4.9296	1	129530			24880	9946	20347	20371	27719	27719					0.06276430782099851
KMGYMCTHR	9	Unmodified	_KMGYMCTHR_					0	0	0		nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS;ENST00000464624.6_1_20:57428320-57466719:+|nuORF;nc|ENSG00000087460|Q5JWF2-3|GNAS	nc|ENSG00000087460|Q5JWF2-2|GNAS	nc|ENSG00000087460|Q5JWF2-2|GNAS	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.3027954101562	2	563.751364	1125.48818	3.2698	0.0018433	1.577	0.00088902	4.8467	0.0027324	564.2533343882652	99.012	0.39759	99.012	98.838	99.236	0					11	9	2	0	0	0	0.027462	1	10950	10950		53.351	10.955	1	189130			24881	14909	20348	20372	27720	27720					-0.0695495398094863
KMHARDFTV	9	Unmodified	_KMHARDFTV_					0	0	0		ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000497177.1_1_3:186504924-186505672:+|nuORF;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENSG00000161960|ENST00000293831|EIF4A1;ZNF586-EIF4A1|4|fusion;ZNF586-EIF4A1|1|fusion;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ZNF586-EIF4A1|3|fusion;nc|ENSG00000161960|P60842-2|EIF4A1;ZNF586-EIF4A1|2|fusion;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000156976|ENST00000323963|EIF4A2;ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000156976|ENST00000323963|EIF4A2	MULTI-MSMS	OvCa99_classI_Rep5	1	552.7843627929688	2	552.784576	1103.5546	-1.2184	-0.00067349	0.71117	0.00039313	-0.50718	-0.00028036	552.7848324361419	44.019	0.92596	44.019	43.78	44.706	0					37	20	3	0	0	0	0.35694	1	2939	2939		56.434	12.317	1	2024400			24882	5867;6146	20349	20373	27721	27721					0.00696321176951642
KMHSDAAAVN	10	Unmodified	_KMHSDAAAVN_					0	0	0		ENST00000513800.5_1_4:52709342-52740935:+|nuORF;ENST00000511675.5_1_4:52709342-52744085:+|nuORF	ENST00000513800.5_1_4:52709342-52740935:+|nuORF	ENST00000513800.5_1_4:52709342-52740935:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	522.2542114257812	2	522.250566	1042.48658	-1.8685	-0.00097583	4.419	0.0023078	2.5505	0.001332	522.2528185724545	104.42	1.4221	104.42	104.06	105.49	0					72	32	3	0	0	0	0.66944	1	11717	11717		33.922	2.3918	1	12446000			24883	12985	20350	20374	27722	27722					-0.03296548473713301
KMIDEAEVL	9	Unmodified	_KMIDEAEVL_					0	0	0		ENSG00000166532|ENST00000535829|RIMKLB;nc|ENSG00000166532|Q9ULI2-2|RIMKLB	ENSG00000166532|ENST00000535829|RIMKLB	ENSG00000166532|ENST00000535829|RIMKLB	MULTI-MSMS	OvCa9_classI_Rep3	3	524.271728515625	2	524.273175	1046.5318	0.85689	0.00044924	-4.4765	-0.0023469	-3.6196	-0.0018977	524.2706948277186	120.46	3.5918	119.43	118.68	122.27	-1.0271					167	69	5	0	0	0	0.18193	1	9222	9222		79.451	0	1	1392700			24884	6690	20351	20375	27723	27723					0.01039257268826077
KMIDYLEDP	9	Unmodified	_KMIDYLEDP_					0	0	0			REV__MCM5-LYN|1|fusion;REV__nc|ENSG00000254087|P07948-2|LYN	REV__MCM5-LYN|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.2061767578125	2	562.270632	1122.52671	2.6904	0.0015127	0.88559	0.00049794	3.576	0.0020107	562.2707787499902	110.66	0.71323	110.66	110.22	110.94	0					21	15	2	0	0	0	0.027462	1	12552	12552		35.618	12.096	1	114080	+		24885	28645;23513	20352	20376	27724	27724					-0.029650465937720583
KMIDYLEDP	9	Unmodified	_KMIDYLEDP_					0	0	0			REV__MCM5-LYN|1|fusion;REV__nc|ENSG00000254087|P07948-2|LYN	REV__MCM5-LYN|1|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	562.270632	1122.52671	0.57323	0.00032231	1.0147	0.00057054	1.5879	0.00089285	562.2707520840409	110.86	0.54335	110.72	110.48	111.03	-0.13961	0.030231	0.00011082	NaN	27.882	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12178	+		24886	28645;23513	20352	20376							-0.029650465937720583
KMIIQWDVI	9	Unmodified	_KMIIQWDVI_					0	0	0			REV__ENST00000588549.1_1_17:76037159-76045021:+|nuORF	REV__ENST00000588549.1_1_17:76037159-76045021:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	573.3221435546875	2	573.323002	1144.63145	-1.9245	-0.0011034	3.7597	0.0021555	1.8352	0.0010521	573.3250796745639	102.5	1.4317	101.81	101.29	102.72	-0.68459					80	28	4	0	0	0	0.16562	1	9431	9431		82.241	11.424	1	398330	+		24887	27889	20353	20377	27725	27725					0.06492119673430352
KMIIQWDVI	9	Unmodified	_KMIIQWDVI_					0	0	0			REV__ENST00000588549.1_1_17:76037159-76045021:+|nuORF	REV__ENST00000588549.1_1_17:76037159-76045021:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	573.3222045898438	2	573.323002	1144.63145	-0.86338	-0.000495	2.8181	0.0016157	1.9547	0.0011207	573.324406473378	103.89	1.3112	101.77	101.38	102.69	-2.1192					63	24	4	0	0	0	0.3076	1	9414	9414		62.107	6.6032	1	527440	+		24888	27889	20353	20377	27726	27726					0.06492119673430352
KMIKIFKLLL	10	Unmodified	_KMIKIFKLLL_					0	0	0			REV__ENSG00000107263|ENST00000683357|RAPGEF1	REV__ENSG00000107263|ENST00000683357|RAPGEF1	MULTI-MSMS	OvCa9_classI_Rep2	2	623.9176635742188	2	623.919613	1245.82467	-5.6275	-0.0035111	2.2677	0.0014149	-3.3597	-0.0020962	623.9209249558969	163.4	0.91801	163.18	162.75	163.67	-0.22696					66	30	3	0	0	0	0.89674	1	16638	16638		6.7355	3.3255	1	62419	+		24889	17839	20354	20378	27727	27727					0.2115928146049555
KMILIYFV	8	Unmodified	_KMILIYFV_					0	0	0			REV__nc|ENSG00000140090|Q8NFF2-4|SLC24A4	REV__nc|ENSG00000140090|Q8NFF2-4|SLC24A4	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.8054809570312	2	513.806457	1025.59836	-4.4375	-0.00228	1.418	0.00072856	-3.0195	-0.0015514	513.8070510950622	154.42	0.79947	152.97	152.74	153.54	-1.4516					32	18	3	0	0	0	0.75724	1	15302	15302		23.037	2.0898	1	93312	+		24890	19653	20355	20379	27728	27728					0.08658537621386131
KMIMDRSLL	9	Unmodified	_KMIMDRSLL_					0	0	0			REV__RIPK2|p.L468M|1|0.02|ENSG00000104312|chr8:89790195-89790195|T/A|missense_variant	REV__RIPK2|p.L468M|1|0.02|ENSG00000104312|chr8:89790195-89790195|T/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8062744140625	2	553.806662	1105.59877	-1.251	-0.00069283	3.7446	0.0020738	2.4936	0.001381	553.8087118394574	119.62	1.3112	118.27	117.98	119.29	-1.3444					51	24	4	0	0	0	0.2422	1	11250	11250		69.628	7.5202	1	136640	+		24891	29335	20356	20380	27729	27729					0.05019589278958847
KMITEPTDL	9	Unmodified	_KMITEPTDL_					0	0	0		tr|A0A553SLZ8|A0A553SLZ8_NIACIMBLfoldmetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_21575PE=4SV=1	tr|A0A553SLZ8|A0A553SLZ8_NIACIMBLfoldmetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_21575PE=4SV=1	tr|A0A553SLZ8|A0A553SLZ8_NIACIMBLfoldmetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_21575PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	524.2719116210938	2	524.273175	1046.5318	0.85689	0.00044924	-4.4765	-0.0023469	-3.6196	-0.0018977	524.2706948277186	120.46	3.5918	119.43	118.68	122.27	-1.0271					167	69	5	0	0	0	0.37135	1	9247	9247		54.776	3.4409	1	1392700			24892	33776	20357	20381	27730	27730					0.01039257268826077
KMITTFILM	9	Unmodified	_KMITTFILM_					0	0	0			REV__ENSG00000279761|ENST00000623930|OR5D13	REV__ENSG00000279761|ENST00000623930|OR5D13	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.8642578125	2	549.308506	1096.60246	1.9336	0.0010621	-0.57352	-0.00031504	1.3601	0.00074709	549.3060281871747	87.791	0.46128	87.791	87.42	87.881	0					13	10	2	0	0	0	0.027462	1	9259	9259		52.937	12.364	1	289220	+		24893	23655	20358	20382	27731	27731					0.05802259052802583
KMKATEERY	9	Unmodified	_KMKATEERY_					0	0	0			REV__WDR3|p.R930Gfs*9|1|0.09|ENSG00000065183|chr1:117959402-117959402|G/-|frameshift_variant	REV__WDR3|p.R930Gfs*9|1|0.09|ENSG00000065183|chr1:117959402-117959402|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2874145507812	2	578.294973	1154.57539	-7.6021	-0.0043963	-1.6299	-0.00094256	-9.232	-0.0053388	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.51865	1	13609	13609		40.778	6.6056	1	1429200	+		24894	16787	20359	20383	27732	27732					0.004288667659693601
KMKAVIEKT	9	Unmodified	_KMKAVIEKT_					0	0	0			REV__nc|ENSG00000138778|Q02224-3|CENPE	REV__nc|ENSG00000138778|Q02224-3|CENPE	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.2844848632812	2	524.315177	1046.6158	0.13072	6.854E-05	-1.9318	-0.0010129	-1.8011	-0.00094432	524.3141341989731	114.4	0.34546	114.28	114.11	114.45	-0.11777					10	6	2	0	0	0	0.027462	1	10860	10860		27.882	8.5223	1	37850	+		24895	19572	20360	20384	27733	27733					0.09435833156385343
KMKEVQAEMK	10	Unmodified	_KMKEVQAEMK_					0	0	0			REV__tr|A0A553SKZ0|A0A553SKZ0_NIACIM20/M25/M40familymetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_19645PE=3SV=1	REV__tr|A0A553SKZ0|A0A553SKZ0_NIACIM20/M25/M40familymetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_19645PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	611.3202514648438	2	611.320134	1220.62571	2.8472	0.0017406	-3.2341	-0.001977	-0.38682	-0.00023647	611.3179167755338	97.211	0.85709	97.211	96.923	97.78	0					62	19	5	0	0	0	0.24997	1	10660	10660		86.882	3.2345	1	5651400	+		24896	30168	20361	20385	27734	27734					0.024226530994610584
KMKLIFVVI	9	Unmodified	_KMKLIFVVI_					0	0	0			REV__ENSG00000181104|ENST00000319211|F2R	REV__ENSG00000181104|ENST00000319211|F2R	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.3056640625	2	545.856481	1089.69841	1.8986	0.0010364	-0.69722	-0.00038058	1.2014	0.00065578	545.8562303181333	108.56	1.1205	108.56	107.99	109.11	0					41	25	2	0	0	0	0.027462	1	12299	12299		37.159	19.794	1	172460	+		24897	22218	20362	20386	27735	27735					0.15714774955199573
KMKLRAPL	8	Unmodified	_KMKLRAPL_					0	0	0		ENST00000492143.5_1_7:148514953-148515082:-|nuORF;ENST00000460911.5_1_7:148514453-148515082:-|nuORF	ENST00000492143.5_1_7:148514953-148515082:-|nuORF	ENST00000492143.5_1_7:148514953-148515082:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.7778015136719	2	478.807322	955.600092	-0.60027	-0.00028742	-1.4653	-0.00070161	-2.0656	-0.00098903	478.8068140804729	73.994	0.3165	72.023	71.745	72.062	-1.9711					6	5	2	0	0	0	0.028476	1	6028	6028		52.299	21.796	1	10135			24898	12162	20363	20387	27736	27736					0.12051591430019926
KMKPAIAPK	9	Oxidation (M)	_KM(Oxidation (M))KPAIAPK_		KM(1)KPAIAPK		KM(46)KPAIAPK	0	0	1		nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6;FGD6|p.D656Vfs*16|1|0.1|ENSG00000180263|chr12:95209317-95209318|-/A|frameshift_variant	nc|ENSG00000180263|Q6ZV73-2|FGD6	nc|ENSG00000180263|Q6ZV73-2|FGD6	MULTI-MSMS	OvCa9_classI_Rep2	2	500.3064880371094	2	500.304613	998.594672	1.8295	0.00091529	1.8159	0.00090851	3.6454	0.0018238	500.3053685545666	27.721	1.1711	25.012	24.828	25.999	-2.7097					57	25	3	0	0	0	0.46377	1	530	530		45.952	10.334	1	318060			24899	7866	20364	20388	27737	27737		237			0.09531867847533704
KMKPARLI	8	Unmodified	_KMKPARLI_					0	0	0			REV__ENSG00000125522|ENST00000684052|NPBWR2	REV__ENSG00000125522|ENST00000684052|NPBWR2	MULTI-SECPEP	OvCa9_classI_Rep3	3	478.7929992675781	2	478.807322	955.600092	-0.49251	-0.00023582	-1.5272	-0.00073122	-2.0197	-0.00096703	478.806648915527	82.9	0.29836	80.604	80.381	80.68	-2.2963					8	5	2	0	0	0	0.028476	1	4687	4687		33.516	8.0654	1	16899	+		24900	18730	20365	20389	27738	27738					0.12051591430019926
KMKRILTLLEE	11	Unmodified	_KMKRILTLLEE_					0	0	0			REV__tr|A0A7D7A1W5|A0A7D7A1W5_9CLOTIS1595familytransposaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14105PE=4SV=1	REV__tr|A0A7D7A1W5|A0A7D7A1W5_9CLOTIS1595familytransposaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14105PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.61236572265625	3	458.611012	1372.81121	0.6013	0.00027576	1.8708	0.00085795	2.472	0.0011337	458.61179274703636	33.116	0.64544	30.421	30.252	30.898	-2.6954					31	12	4	0	0	0	0.72477	1	857	857		18.531	1.3643	1	77614	+		24901	32511	20366	20390	27739	27739					0.13971378890619235
KMKRMRFCPSV	11	Unmodified	_KMKRMRFCPSV_					0	0	0			REV__ENST00000377110.7_2_9:73461461-73477999:-|nuORF	REV__ENST00000377110.7_2_9:73461461-73477999:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	461.7588195800781	3	461.578772	1381.71449	-1.6	-0.00073851	-1.1542	-0.00053275	-2.7542	-0.0012713	461.5779569038178	48.749	0.52027	45.641	45.451	45.971	-3.1077					16	9	3	0	0	0	0.025767	1	2702	2702		24.232	1.6702	1	16825	+		24902	25113	20367	20391	27740	27740					0.0388978985815811
KMKRWWKKRES	11	Unmodified	_KMKRWWKKRES_					0	0	0			REV__chr12:6769674-6769978|160|137.92|0.84|7.36|+|1|PTMS,None|1	REV__chr12:6769674-6769978|160|137.92|0.84|7.36|+|1|PTMS,None|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.8767700195312	3	521.6294	1561.86637	2.6545	0.0013847	3.1687	0.0016529	5.8233	0.0030376	521.6309969983323	97.396	0.60323	97.396	97.093	97.696	0					24	13	2	0	0	0	0.026534	1	10706	10706		0.31226	0	1	527780	+		24903	15887	20368	20392	27741	27741					0.10791230201698454
KMKSQSTAVL	10	Unmodified	_KMKSQSTAVL_					0	0	0			REV__nc|ENSG00000275066|Q9UMZ2-6|SYNRG	REV__nc|ENSG00000275066|Q9UMZ2-6|SYNRG	MULTI-MSMS	OvCa9_classI_Rep3	3	546.809326171875	2	546.807716	1091.60088	-1.078	-0.00058948	1.5268	0.00083489	0.44881	0.00024541	546.8083366729987	117.61	1.8837	116.58	116.29	118.17	-1.0324					95	37	4	0	0	0	0.42962	1	8843	8843		64.207	2.0999	1	396580	+		24904	23624	20369	20393	27742	27742					0.05874341288404139
KMKYTVFIAI	10	Unmodified	_KMKYTVFIAI_					0	0	0			REV__tr|A0A553SLT6|A0A553SLT6_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_21270PE=3SV=1	REV__tr|A0A553SLT6|A0A553SLT6_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_21270PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	405.2389221191406	3	405.238627	1212.69405	1.178	0.00047739	-1.2698	-0.00051456	-0.091713	-3.7166E-05	405.2380980368008	45.582	1.7446	42.872	42.448	44.192	-2.7097					104	34	5	0	0	0	0.60504	1	2655	2655		41.427	3.9184	1	1021000	+		24905	30262	20370	20394	27743	27743					0.09621265741657226
KMLENLLSE	9	Unmodified	_KMLENLLSE_					0	0	0		ENSG00000150269|ENST00000279791|OR5M9	ENSG00000150269|ENST00000279791|OR5M9	ENSG00000150269|ENST00000279791|OR5M9	MULTI-SECPEP	OvCa9_classI_Rep2	2	538.3032836914062	2	538.78645	1075.55835	1.0045	0.00054122	-1.1354	-0.00061175	-0.13092	-7.0536E-05	538.7855590133742	88.945	0.98431	87.577	86.987	87.971	-1.3676					40	19	3	0	0	0	0.027411	1	7857	7857		58.23	0	1	26322			24906	5502	20371	20395	27744	27744					0.023589461601886796
KMLICHENVM	10	Oxidation (M)	_KMLICHENVM(Oxidation (M))_		KMLICHENVM(1)		KM(-41)LICHENVM(41)	0	0	1			REV__tr|A0A7D6ZHG8|A0A7D6ZHG8_9CLOTGlycosidehydrolasefamily65proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02965PE=3SV=1	REV__tr|A0A7D6ZHG8|A0A7D6ZHG8_9CLOTGlycosidehydrolasefamily65proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02965PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	617.2953491210938	2	617.293062	1232.57157	2.6756	0.0016516	-0.31939	-0.00019716	2.3562	0.0014545	617.292642560223	97.832	0.5101	97.832	97.611	98.121	0					15	11	2	0	0	0	0.58067	1	10766	10766		44.377	6.5657	2	776050	+		24907	32025	20372	20396	27745	27745		711			-0.035412623237562
KMLICHENVM	10	Oxidation (M)	_KMLICHENVM(Oxidation (M))_					0	0	1			REV__tr|A0A7D6ZHG8|A0A7D6ZHG8_9CLOTGlycosidehydrolasefamily65proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02965PE=3SV=1	REV__tr|A0A7D6ZHG8|A0A7D6ZHG8_9CLOTGlycosidehydrolasefamily65proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02965PE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	617.293062	1232.57157	2.6756	0.0016516	-0.31939	-0.00019716	2.3562	0.0014545	617.292642560223	97.832	0.5101	97.832	97.611	98.121	0	0	0	NaN	44.377	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	776050	+		24908	32025	20372	20396				711			-0.035412623237562
KMLSMSALI	9	Oxidation (M)	_KMLSM(Oxidation (M))SALI_		KMLSM(1)SALI		KM(-70)LSM(70)SALI	0	0	1			REV__ENST00000479271.1_1_1:182824750-182824804:+|nuORF	REV__ENST00000479271.1_1_1:182824750-182824804:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	505.2754821777344	2	505.274664	1008.53477	-1.8695	-0.0009446	1.6838	0.00085081	-0.18564	-9.3798E-05	505.2754531740072	84.757	1.4423	83.211	82.797	84.239	-1.5462					73	28	4	0	0	0	0.11171	1	7313	7313		94.006	17.16	2	807860	+		24909	26432	20373	20397	27746	27746		589			0.030848091220036622
KMMVWLQI	8	Oxidation (M)	_KM(Oxidation (M))MVWLQI_		KM(0.996)M(0.004)VWLQI		KM(23)M(-23)VWLQI	0	0	1			REV__ENST00000504830.5_3_5:33527080-33527254:-|nuORF	REV__ENST00000504830.5_3_5:33527080-33527254:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	532.7875366210938	2	532.785198	1063.55584	-0.17634	-9.3953E-05	2.9821	0.0015888	2.8058	0.0014949	532.7864398738315	87.894	0.96815	85.717	85.447	86.416	-2.1768					60	18	4	0	0	0	0.50674	1	5312	5312		76.847	10.417	2	467300	+		24910	26864	20374	20398	27747	27747		599			0.026608192215007875
KMNEKLYTV	9	Unmodified	_KMNEKLYTV_					0	0	0		nc|ENSG00000083642|Q9NTI5-2|PDS5B;ENSG00000083642|ENST00000315596|PDS5B	nc|ENSG00000083642|Q9NTI5-2|PDS5B	nc|ENSG00000083642|Q9NTI5-2|PDS5B	MULTI-MSMS	OvCa99_classI_Rep5	1	563.3033447265625	2	563.302267	1124.58998	0.48133	0.00027114	-1.0907	-0.00061437	-0.60933	-0.00034324	563.3013586756451	56.993	0.77205	56.993	56.581	57.353	0					33	15	3	0	0	0	0.094616	1	4768	4768		98.629	34.422	1	1039000			24911	1697	20375	20399	27748	27748					0.03266938914111961
KMNIVVHSI	9	Unmodified	_KMNIVVHSI_					0	0	0			REV__ENST00000453011.5_1_1:101538218-101538350:+|nuORF	REV__ENST00000453011.5_1_1:101538218-101538350:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.7972412109375	2	520.799694	1039.58484	0.59197	0.0003083	-4.3707	-0.0022762	-3.7787	-0.0019679	520.797385276476	36.315	1.995	33.466	33.139	35.134	-2.849					141	39	6	0	0	0	0.48324	1	1323	1323		44.117	6.3053	1	2408500	+		24912	25989	20376	20400	27749	27749					0.06662679842156649
KMNKWFFY	8	Unmodified	_KMNKWFFY_					0	0	0			REV__ENSG00000105398|ENST00000222002|SULT2A1	REV__ENSG00000105398|ENST00000222002|SULT2A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.7717895507812	2	582.288963	1162.56337	0.89523	0.00052128	3.1912	0.0018582	4.0864	0.0023795	582.2906154448061	144.59	0.53227	144.59	144.35	144.89	0					20	10	3	0	0	0	0.028476	1	16924	16924		42.474	13.325	1	65855	+		24913	17722	20377	20401	27750	27750					-0.011407051865489848
KMNMNLREL	9	Unmodified	_KMNMNLREL_					0	0	0		ENSG00000104866|ENST00000221462|PPP1R37;ENST00000422370.2_1_19:45645388-45645871:+|nuORF	ENSG00000104866|ENST00000221462|PPP1R37	ENSG00000104866|ENST00000221462|PPP1R37	MULTI-MSMS	OvCa9_classI_Rep2	2	574.8004150390625	2	574.799368	1147.58418	-0.32538	-0.00018703	2.7472	0.0015791	2.4218	0.001392	574.8008248243444	132.16	0.98102	131.93	131.64	132.62	-0.22697					52	19	4	0	0	0	0.3076	1	13045	13045		62.107	5.3864	1	141440			24914	2401	20378	20402	27751	27751					0.016295171308001954
KMNNRRIL	8	Unmodified	_KMNNRRIL_					0	0	0			REV__ENSG00000138813|ENST00000326581|C4orf17	REV__ENSG00000138813|ENST00000326581|C4orf17	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.7887573242188	2	522.808385	1043.60222	-2.5426	-0.0013293	-4.0518	-0.0021183	-6.5944	-0.0034476	522.8056569235476	49.65	0.4164	46.508	46.403	46.82	-3.1416					13	7	2	0	0	0	0.028476	1	2829	2829		65.897	16.456	1	36292	+		24915	19578	20379	20403	27752	27752					0.08216020167810711
KMPKFKMPSF	10	Unmodified	_KMPKFKMPSF_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.V1193Hfs*8|1|0.26|ENSG00000185567|chr14:104951874-104951875|-/TTTGGGTG|frameshift_variant;AHNAK2|p.E1685Pfs*13|1|0.05|ENSG00000185567|chr14:104950398-104950399|-/AGACACATGGGTGG|frameshift_variant;AHNAK2|p.F3808Sfs*30|1|0.04|ENSG00000185567|chr14:104944028-104944028|A/-|frameshift_variant	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-MSMS	OvCa99_classI_Rep5	1	414.2259216308594	3	414.224212	1239.65081	2.6331	0.0010907	-0.18149	-7.5176E-05	2.4516	0.0010155	414.22397293187606	87.265	1.1601	87.265	86.801	87.962	0					70	27	3	0	0	0	0.23547	2	9218	9218;9247		89.029	23.563	1	2443500			24916	8262	20380	20404	27753;27754	27753					0.040567526926906794
KMPKMKMPKF	10	Unmodified	_KMPKMKMPKF_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant;AHNAK|p.P895Cfs*7|1|0.12|ENSG00000124942|chr11:62531725-62531735|CCACTTCTGGG/-|frameshift_variant;AHNAK|p.P767Cfs*7|1|0.15|ENSG00000124942|chr11:62532109-62532119|CCACTTCTGGG/-|frameshift_variant;AHNAK|p.L1252R|1|0.1|ENSG00000124942|chr11:62530662-62530662|A/C|missense_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa99_classI_Rep5	1	422.57080078125	3	422.569214	1264.68581	-0.5104	-0.00021568	0.42511	0.00017964	-0.085289	-3.604E-05	422.56929023838677	63.804	1.414	63.804	63.296	64.71	0					73	34	3	0	0	0	0.33877	1	5766	5766		76.17	9.2078	1	2709000			24917	3687	20381	20405	27755	27755					0.06405672228993353
KMPKMKMPTF	10	Unmodified	_KMPKMKMPTF_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant;AHNAK|p.P895Cfs*7|1|0.12|ENSG00000124942|chr11:62531725-62531735|CCACTTCTGGG/-|frameshift_variant;AHNAK|p.P767Cfs*7|1|0.15|ENSG00000124942|chr11:62532109-62532119|CCACTTCTGGG/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa99_classI_Rep5	1	413.55462646484375	3	413.553452	1237.63853	2.9491	0.0012196	-0.60651	-0.00025082	2.3426	0.0009688	413.55310967225057	76.496	1.3452	76.496	76.036	77.381	0					96	32	4	0	0	0	0.05764	3	7699	7638;7666;7699		126.24	26.677	1	8173300			24918	3687	20382	20406	27756;27757;27758	27758					0.02921392958000979
KMPKMKMPTF	10	Unmodified	_KMPKMKMPTF_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant;AHNAK|p.P895Cfs*7|1|0.12|ENSG00000124942|chr11:62531725-62531735|CCACTTCTGGG/-|frameshift_variant;AHNAK|p.P767Cfs*7|1|0.15|ENSG00000124942|chr11:62532109-62532119|CCACTTCTGGG/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa99_classI_Rep5	1	619.8280029296875	2	619.82654	1237.63853	1.8715	0.00116	0.33952	0.00021044	2.2111	0.0013705	619.8266325255094	76.511	1.3452	76.511	76.036	77.381	0					77	32	3	0	0	0	0.012998	3	7667	7639;7667;7698		134.77	74.647	1	8556400			24919	3687	20382	20406	27759;27760;27761	27760					0.02921392958000979
KMPKVKMPKF	10	Unmodified	_KMPKVKMPKF_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa99_classI_Rep5	1	411.9132080078125	3	411.911857	1232.71374	-0.10122	-4.1692E-05	-0.22725	-9.3606E-05	-0.32846	-0.0001353	411.9116917884169	64.004	1.7768	64.004	63.257	65.034	0					104	43	3	0	0	0	0.13794	4	5789	5762;5789;5821;5852		104.01	29.849	1	6377500			24920	3687	20383	20407	27762;27763;27764;27765	27763					0.1066931848074546
KMPSRALAL	9	Unmodified	_KMPSRALAL_					0	0	0		ENST00000517677.5_1_5:150512707-150518279:-|nuORF	ENST00000517677.5_1_5:150512707-150518279:-|nuORF	ENST00000517677.5_1_5:150512707-150518279:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	493.7973937988281	2	493.794412	985.574271	2.2842	0.0011279	-0.06838	-3.3766E-05	2.2159	0.0010942	493.7942449435608	91.693	0.75952	91.693	91.415	92.174	0					41	17	3	0	0	0	0.28934	1	9888	9888		64.207	0	1	2455400			24921	13061	20384	20408	27766	27766					0.08090697187708429
KMPSRALAL	9	Unmodified	_KMPSRALAL_					0	0	0		ENST00000517677.5_1_5:150512707-150518279:-|nuORF	ENST00000517677.5_1_5:150512707-150518279:-|nuORF	ENST00000517677.5_1_5:150512707-150518279:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	493.794412	985.574271	-0.1066	-5.264E-05	1.6041	0.0007921	1.4975	0.00073946	493.79691564076586	94.367	0.64676	91.899	91.714	92.36	-2.4685	0.10293	0.001605	NaN	64.207	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20638			24922	13061	20384	20408							0.08090697187708429
KMQFFHSC	8	Unmodified	_KMQFFHSC_					0	0	0			REV__nc|ENSG00000008735|Q13387-4|MAPK8IP2	REV__nc|ENSG00000008735|Q13387-4|MAPK8IP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.3344116210938	2	514.228048	1026.44154	-0.16143	-8.3013E-05	2.4587	0.0012643	2.2972	0.0011813	514.2292207997817	46.986	1.3098	46.986	46.198	47.508	0					49	29	2	0	0	0	0.028476	1	3265	3265		55.504	5.4797	1	136540	+		24923	16460	20385	20409	27767	27767					-0.07062070540564491
KMQIVQYLD	9	Unmodified	_KMQIVQYLD_					0	0	0			REV__tr|A0A553SR76|A0A553SR76_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00580PE=4SV=1	REV__tr|A0A553SR76|A0A553SR76_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00580PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.7423095703125	2	569.302267	1136.58998	1.8752	0.0010676	-1.8473	-0.0010517	0.027926	1.5898E-05	569.3012962592297	87.714	0.41583	87.714	87.338	87.754	0					12	9	2	0	0	0	0.027447	1	9257	9257		39.253	0.44669	1	115640	+		24924	30699	20386	20410	27768	27768					0.027149389141186475
KMQTRRLL	8	Unmodified	_KMQTRRLL_					0	0	0		ROBO1|p.C1437Sfs*15|1|0.21|ENSG00000169855|chr3:78614773-78614774|-/TG|frameshift_variant;nc|ENSG00000169855|Q9Y6N7-6|ROBO1;nc|ENSG00000169855|Q9Y6N7-5|ROBO1;nc|ENSG00000169855|Q9Y6N7-4|ROBO1;nc|ENSG00000169855|Q9Y6N7-3|ROBO1;ENSG00000169855|ENST00000464233|ROBO1;nc|ENSG00000169855|Q9Y6N7-2|ROBO1	ROBO1|p.C1437Sfs*15|1|0.21|ENSG00000169855|chr3:78614773-78614774|-/TG|frameshift_variant	ROBO1|p.C1437Sfs*15|1|0.21|ENSG00000169855|chr3:78614773-78614774|-/TG|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	523.3187255859375	2	523.318586	1044.62262	0.14804	7.7472E-05	-3.6253	-0.0018972	-3.4772	-0.0018197	523.3165548284824	66.8	0.43909	66.8	66.575	67.014	0					21	10	3	0	0	0	0.59148	1	6217	6217		65.803	2.4969	1	1239800			24925	7044	20387	20411	27769	27769					0.10209190827617931
KMQYKYLLYHV	11	Unmodified	_KMQYKYLLYHV_					0	0	0			REV__ENSG00000177689|ENST00000356790|MAGEB10	REV__ENSG00000177689|ENST00000356790|MAGEB10	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.2575988769531	3	495.935607	1484.78499	-0.23291	-0.00011551	-1.3004	-0.00064491	-1.5333	-0.00076042	496.26992968738847	60.624	0.21089	60.624	60.477	60.688	0					5	4	2	0	0	0	0.026079	1	5291	5291		25.126	12.693	1	121330	+		24926	22022	20388	20412	27770	27770					0.06199109719113949
KMSEKILLL	9	Oxidation (M)	_KM(Oxidation (M))SEKILLL_		KM(1)SEKILLL		KM(77)SEKILLL	0	0	1		ENSG00000126067|ENST00000373237|PSMB2;KIAA0319L-PSMB2|1|fusion;PSMB2-C1orf94|3|fusion;PSMB2-C1orf94|4|fusion;PSMB2-C1orf94|1|fusion;PSMB2-C1orf94|2|fusion	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	OvCa9_classI_Rep2	2	545.8303833007812	2	545.83066	1089.64677	0.30665	0.00016738	-0.45631	-0.00024907	-0.14966	-8.1689E-05	545.830217421252	81.906	1.4389	80.258	79.971	81.41	-1.6485					76	27	4	0	0	0	0.1944	1	6973	6973		77.318	9.8239	1	555440			24927	3764	20389	20413	27771	27771		115			0.10552986470634096
KMSEKILLL	9	Oxidation (M)	_KM(Oxidation (M))SEKILLL_					0	0	1		ENSG00000126067|ENST00000373237|PSMB2;KIAA0319L-PSMB2|1|fusion;PSMB2-C1orf94|3|fusion;PSMB2-C1orf94|4|fusion;PSMB2-C1orf94|1|fusion;PSMB2-C1orf94|2|fusion	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	545.83066	1089.64677	-1.2419	-0.00067787	0.79332	0.00043302	-0.44859	-0.00024485	545.8308377486227	82.464	1.7834	80.167	79.836	81.62	-2.2963	-0.087376	0.00066037	NaN	77.318	89	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	654900			24928	3764	20389	20413				115			0.10552986470634096
KMSEKILLL	9	Oxidation (M)	_KM(Oxidation (M))SEKILLL_					0	0	1		ENSG00000126067|ENST00000373237|PSMB2;KIAA0319L-PSMB2|1|fusion;PSMB2-C1orf94|3|fusion;PSMB2-C1orf94|4|fusion;PSMB2-C1orf94|1|fusion;PSMB2-C1orf94|2|fusion	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	545.83066	1089.64677	-0.68331	-0.00037297	0.34363	0.00018757	-0.33968	-0.00018541	545.8307036102319	83.022	1.4558	80.339	80.028	81.483	-2.6829	0.084291	0.00016947	NaN	77.318	66	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	623310			24929	3764	20389	20413				115			0.10552986470634096
KMSFNFLIT	9	Unmodified	_KMSFNFLIT_					0	0	0		ENST00000209875.8_1_12:54635216-54635510:-|nuORF	ENST00000209875.8_1_12:54635216-54635510:-|nuORF	ENST00000209875.8_1_12:54635216-54635510:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	550.8140258789062	2	550.794078	1099.5736	0.44132	0.00024308	1.3103	0.0007217	1.7516	0.00096478	550.7949878126066	66.942	1.1907	64.281	63.751	64.941	-2.661					45	20	4	0	0	0	0.027447	1	5167	5167		56.721	10.749	1	131390			24930	9659	20390	20414	27772	27772					0.027798577480325548
KMSFNFLIT	9	Unmodified	_KMSFNFLIT_					0	0	0		ENST00000209875.8_1_12:54635216-54635510:-|nuORF	ENST00000209875.8_1_12:54635216-54635510:-|nuORF	ENST00000209875.8_1_12:54635216-54635510:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	550.794078	1099.5736	1.258	0.0006929	0.21768	0.00011989	1.4757	0.00081279	550.7942782513085	67.623	1.2749	64.133	63.789	65.064	-3.4902	-0.073769	-0.00039294	NaN	56.721	69	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	804180			24931	9659	20390	20414							0.027798577480325548
KMSSIEEKT	9	Unmodified	_KMSSIEEKT_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-MSMS	OvCa99_classI_Rep5	1	526.7673950195312	2	526.768257	1051.52196	1.8073	0.00095203	-2.8395	-0.0014957	-1.0321	-0.0005437	526.7666790543623	85.472	1.2627	85.472	85.169	86.431	0					78	30	5	0	0	0	0.56189	1	8952	8952		36.447	0	1	9357900	+		24932	20520	20391	20415	27773	27773					-0.0017393073653693136
KMTIKRSL	8	Unmodified	_KMTIKRSL_					0	0	0			REV__tr|A0A7D6ZZ54|A0A7D6ZZ54_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_04750PE=4SV=1	REV__tr|A0A7D6ZZ54|A0A7D6ZZ54_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_04750PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	488.80133056640625	2	488.802237	975.589921	-0.018766	-9.1728E-06	-3.4123	-0.0016679	-3.4311	-0.0016771	488.8004610679699	64.691	0.57356	64.691	64.461	65.034	0					24	13	2	0	0	0	0.61436	1	5891	5891		60.972	5.4677	1	2320600	+		24933	32398	20392	20416	27774	27774					0.1011498370477284
KMTTSQKVT	9	Unmodified	_KMTTSQKVT_					0	0	0		ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.80950927734375	2	512.278792	1022.54303	2.1342	0.0010933	-0.69992	-0.00035855	1.4342	0.00073473	512.2780610355614	75.02	0.73141	75.02	74.478	75.209	0					32	17	3	0	0	0	0.027462	1	7460	7460		20.947	0	1	432000			24934	6369	20393	20417	27775	27775					0.03266079362970231
KMTVWLGQG	9	Unmodified	_KMTVWLGQG_					0	0	0			REV__ENSG00000134516|ENST00000520908|DOCK2	REV__ENSG00000134516|ENST00000520908|DOCK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.3123779296875	2	510.27077	1018.52699	2.0735	0.0010581	-1.6991	-0.00086699	0.37445	0.00019107	510.269360761933	118.13	0.65158	118.13	117.93	118.58	0					18	13	2	0	0	0	0.027462	1	13543	13543		31.53	0	1	107680	+		24935	19210	20394	20418	27776	27776					0.01846417916738119
KMVSIQITL	9	Unmodified	_KMVSIQITL_					0	0	0		ENSG00000132842|ENST00000255194|AP3B1;nc|ENSG00000132842|O00203-3|AP3B1	ENSG00000132842|ENST00000255194|AP3B1	ENSG00000132842|ENST00000255194|AP3B1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.8113403320312	2	516.809728	1031.6049	1.5845	0.00081887	0.6708	0.00034667	2.2553	0.0011655	516.8098857137094	112.67	0.85535	112.67	112.43	113.29	0					39	18	3	0	0	0	0.030867	1	12833	12833		134.77	36.136	1	1233900			24936	4179	20395	20419	27777	27777					0.0903643078213463
KMVTYLEN	8	Unmodified	_KMVTYLEN_					0	0	0			REV__ENSG00000196220|ENST00000383836|SRGAP3;REV__nc|ENSG00000196935|Q7Z6B7-2|SRGAP1;REV__SRGAP1|p.V1061Ffs*17|1|0.04|ENSG00000196935|chr12:64142593-64142594|-/CTTTGTAGGGACATGGATGAAAT|frameshift_variant	REV__nc|ENSG00000196935|Q7Z6B7-2|SRGAP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.77301025390625	2	499.254785	996.495018	-0.72415	-0.00036154	0.24065	0.00012015	-0.4835	-0.00024139	499.2547007937038	91.445	0.85882	88.902	88.708	89.567	-2.5425					20	16	2	0	0	0	0.028476	1	7928	7928		49.442	12.282	1	32001	+		24937	22877;29452;22802	20396	20420	27778	27778					-0.003369945570625532
KMVVVQALRLL	11	Unmodified	_KMVVVQALRLL_					0	0	0		nc|ENSG00000112659|Q8IWT3-3|CUL9;ENSG00000112659|ENST00000252050|CUL9;ENST00000515773.5_1_6:43152048-43164205:+|nuORF	nc|ENSG00000112659|Q8IWT3-3|CUL9	nc|ENSG00000112659|Q8IWT3-3|CUL9	MULTI-MSMS	OvCa9_classI_Rep4_	4	423.94061279296875	3	423.940693	1268.80025	-0.74511	-0.00031588	-2.2066	-0.00093547	-2.9517	-0.0012514	423.93974120654525	80.337	1.5685	77.626	77.22	78.788	-2.7106					89	31	4	0	0	0	0.48315	1	6550	6550		55.084	4.2927	1	398430			24938	2917	20397	20421	27779	27779					0.17660021306960516
KMWEEAISL	9	Unmodified	_KMWEEAISL_					0	0	0		ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	ENSG00000134516|ENST00000520908|DOCK2	ENSG00000134516|ENST00000520908|DOCK2	MULTI-MSMS	OvCa99_classI_Rep5	1	553.7823486328125	2	553.781167	1105.54778	1.6254	0.00090013	0.65454	0.00036247	2.28	0.0012626	553.7814642775205	110.03	0.67474	110.03	109.77	110.45	0					28	14	2	0	0	0	0.10502	1	12469	12469		95.815	10.654	1	2492500			24939	4305	20398	20422	27780	27780					-0.0007703649425820913
KMWPVPVL	8	Unmodified	_KMWPVPVL_					0	0	0			REV__ENST00000397936.7_1_5:146614663-146614744:+|nuORF	REV__ENST00000397936.7_1_5:146614663-146614744:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.74749755859375	2	485.283149	968.551745	2.7704	0.0013444	2.0253	0.00098287	4.7958	0.0023273	485.28426644078985	99.192	0.53271	99.192	98.955	99.488	0					38	12	5	0	0	0	0.028476	1	10949	10949		35.201	0	1	1409800	+		24940	25366	20399	20423	27781	27781					0.06621097790105068
KMYDAAKLLY	10	Unmodified	_KMYDAAKLLY_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa9_classI_Rep4_	4	608.3274536132812	2	608.325742	1214.63693	0.27828	0.00016928	-1.0242	-0.00062304	-0.74591	-0.00045376	608.3251225354355	90.902	1.632	88.327	87.801	89.433	-2.575					70	31	3	0	0	0	0.17901	1	7852	7852		106.68	18.929	1	288730			24941	4906	20400	20424	27782	27782					0.03819798465247004
KMYDAAKLLY	10	Unmodified	_KMYDAAKLLY_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MATCH	OvCa9_classI_Rep2	2		2	608.325742	1214.63693	1.3058	0.00079435	-1.8983	-0.0011548	-0.59255	-0.00036047	608.3244544911215	89.513	1.2372	88.21	87.84	89.077	-1.302	-0.10275	-0.00028691	NaN	106.68	49	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302130			24942	4906	20400	20424							0.03819798465247004
KMYDAAKLLY	10	Unmodified	_KMYDAAKLLY_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MATCH	OvCa9_classI_Rep3	3		2	608.325742	1214.63693	0.97652	0.00059404	-2.6527	-0.0016137	-1.6761	-0.0010196	608.3245028569767	90.483	1.4226	88.402	88.004	89.427	-2.0805	0.088907	-0.0012046	NaN	106.68	72	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	350290			24943	4906	20400	20424							0.03819798465247004
KNAEEVIR	8	Unmodified	_KNAEEVIR_					0	0	0			REV__ENSG00000103415|ENST00000570646|HMOX2	REV__ENSG00000103415|ENST00000570646|HMOX2	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.805419921875	2	479.769448	957.524344	-1.2624	-0.00060565	1.2696	0.00060914	0.0072778	3.4917E-06	479.77000328204076	55.008	1.5423	52.194	51.722	53.265	-2.8139					50	30	3	0	0	0	0.028476	1	3892	3892		47.916	0	1	151630	+		24944	17616	20401	20425	27783	27783					0.043882857834205424
KNAERRAE	8	Unmodified	_KNAERRAE_					0	0	0			REV__DDX10-ATM|1|fusion	REV__DDX10-ATM|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.28662109375	2	487.262322	972.510091	-0.70237	-0.00034224	2.802	0.0013653	2.0997	0.0010231	487.26345004126165	49.279	1.3366	46.518	45.979	47.315	-2.7603					56	26	3	0	0	0	0.028476	1	3060	3060		79.451	8.1553	1	89100	+		24945	16276	20402	20426	27784	27784					0.02273633355127913
KNAILTQLI	9	Unmodified	_KNAILTQLI_					0	0	0			REV__tr|A0A553SGY6|A0A553SGY6_NIACIFoldaseproteinPrsAOS=NialliacirculansOX=1397GN=prsAPE=3SV=1	REV__tr|A0A553SGY6|A0A553SGY6_NIACIFoldaseproteinPrsAOS=NialliacirculansOX=1397GN=prsAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	507.3213195800781	2	507.321317	1012.62808	1.7978	0.00091208	-2.1486	-0.00109	-0.35076	-0.00017795	507.31979097350575	102.9	0.92271	102.9	102.72	103.64	0					70	21	5	0	0	0	0.16562	1	11471	11471		82.241	1.7859	1	10607000	+		24946	29751	20403	20427	27785	27785					0.12227192891100458
KNAKELQVK	9	Unmodified	_KNAKELQVK_					0	0	0			REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2	REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.2999267578125	2	529.321848	1056.62914	-2.0971	-0.00111	1.5896	0.00084141	-0.50747	-0.00026861	529.322305248136	48.802	0.576	45.694	45.553	46.129	-3.1077					18	10	2	0	0	0	0.027447	1	2738	2738		47.657	6.8792	1	61652	+		24947	28931	20404	20428	27786	27786					0.10309407260001535
KNAKELQVK	9	Unmodified	_KNAKELQVK_					0	0	0			REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2	REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	529.321848	1056.62914	-1.3331	-0.00070564	1.316	0.00069661	-0.017062	-9.0314E-06	529.3221065248491	48.476	0.64957	45.716	45.478	46.127	-2.7603	0.010842	-0.00018463	NaN	47.657	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26402	+		24948	28931	20404	20428							0.10309407260001535
KNAKRWNF	8	Unmodified	_KNAKRWNF_					0	0	0			REV__CCSER2|p.A763Efs*315|1|0.03|ENSG00000107771|chr10:84477626-84477627|-/AA|frameshift_variant	REV__CCSER2|p.A763Efs*315|1|0.03|ENSG00000107771|chr10:84477626-84477627|-/AA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.8085327148438	2	532.293425	1062.5723	-0.34045	-0.00018122	-1.6044	-0.000854	-1.9448	-0.0010352	532.2924841486753	110.99	1.5259	109.39	108.7	110.23	-1.6011					43	28	3	0	0	0	0.028476	1	10160	10160		19.36	0	1	52688	+		24949	15758	20405	20429	27787	27787					0.04351404494127564
KNAPLRVK	8	Unmodified	_KNAPLRVK_					0	0	0		CCT3-ARHGEF11|1|fusion;nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11	CCT3-ARHGEF11|1|fusion	CCT3-ARHGEF11|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep3	3	464.2802734375	2	463.300719	924.586885	-1.1791	-0.00054629	0.55984	0.00025937	-0.61929	-0.00028692	463.30080698405175	85.946	2.3757	83.726	83.235	85.61	-2.2204					119	46	4	0	0	0	0.028476	1	5233	5233		17.365	0	1	859250			24950	202	20406	20430	27788	27788					0.12157476642278198
KNASKMPVL	9	Unmodified	_KNASKMPVL_					0	0	0		tr|A0A7D6VME0|A0A7D6VME0_9CLOTMembranedipeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15015PE=4SV=1	tr|A0A7D6VME0|A0A7D6VME0_9CLOTMembranedipeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15015PE=4SV=1	tr|A0A7D6VME0|A0A7D6VME0_9CLOTMembranedipeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15015PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	494.28680419921875	2	494.28642	986.558287	-1.2403	-0.00061306	0.87686	0.00043342	-0.36342	-0.00017964	494.28670132933	84.122	2.6507	81.861	81.346	83.997	-2.261					153	54	4	0	0	0	0.16524	1	4824	4824		82.305	2.854	1	2419900			24951	34654	20407	20431	27789	27789					0.0644699095081478
KNAVIRVMQRR	11	Unmodified	_KNAVIRVMQRR_					0	0	0		ENSG00000181767|ENST00000313503|OR8H2	ENSG00000181767|ENST00000313503|OR8H2	ENSG00000181767|ENST00000313503|OR8H2	MULTI-MSMS	OvCa9_classI_Rep2	2	457.9423828125	3	457.610228	1369.80886	-3.7462	-0.0017143	-1.2014	-0.00054976	-4.9476	-0.0022641	457.60971240856696	157.06	2.9403	156.83	155.39	158.33	-0.22696					220	89	3	0	0	0	0.72477	1	15993	15993		18.531	1.8137	1	46638			24952	7952	20408	20432	27790	27790					0.13874387996111182
KNAVLPAKGL	10	Unmodified	_KNAVLPAKGL_					0	0	0			REV__tr|A0A7D6ZQJ5|A0A7D6ZQJ5_9CLOTsulfateadenylyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00570PE=3SV=1	REV__tr|A0A7D6ZQJ5|A0A7D6ZQJ5_9CLOTsulfateadenylyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00570PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.27880859375	2	505.821484	1009.62842	-0.13865	-7.0131E-05	-0.4852	-0.00024543	-0.62385	-0.00031556	505.8209186083113	61.28	0.9592	57.85	57.544	58.503	-3.43					46	19	3	0	0	0	0.026688	1	4168	4168		40.778	8.8233	1	230530	+		24953	32149	20409	20433	27791	27791					0.1239861261092301
KNAVLPAKGL	10	Unmodified	_KNAVLPAKGL_					0	0	0			REV__tr|A0A7D6ZQJ5|A0A7D6ZQJ5_9CLOTsulfateadenylyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00570PE=3SV=1	REV__tr|A0A7D6ZQJ5|A0A7D6ZQJ5_9CLOTsulfateadenylyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00570PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	505.821484	1009.62842	-1.1456	-0.00057946	1.0824	0.00054749	-0.063195	-3.1966E-05	505.8216916841523	60.364	1.0038	57.594	57.186	58.19	-2.7702	-0.1279	0.00081103	NaN	40.778	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133610	+		24954	32149	20409	20433							0.1239861261092301
KNCGLVRAI	9	Unmodified	_KNCGLVRAI_					0	0	0			REV__tr|A0A553SGE1|A0A553SGE1_NIACIDNAtopoisomeraseOS=NialliacirculansOX=1397GN=CEQ21_10660PE=3SV=1	REV__tr|A0A553SGE1|A0A553SGE1_NIACIDNAtopoisomeraseOS=NialliacirculansOX=1397GN=CEQ21_10660PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	487.28271484375	2	487.284211	972.55387	-1.0485	-0.0005109	-4.414	-0.0021509	-5.4624	-0.0026618	487.2819843698998	95.08	2.6649	93.185	92.561	95.226	-1.8956					196	52	7	0	0	0	0.29717	1	6222	6222		63.306	2.3343	1	4110600	+		24955	29691	20410	20434	27792	27792					0.06649526527905891
KNCILLVRL	9	Unmodified	_KNCILLVRL_					0	0	0			REV__ENST00000510078.5_1_3:129112637-129115133:-|nuORF	REV__ENST00000510078.5_1_3:129112637-129115133:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.3414306640625	2	536.338987	1070.66342	2.5098	0.0013461	3.4926	0.0018732	6.0024	0.0032193	536.3407702142576	130.99	1.0366	129.51	129.21	130.24	-1.4779					43	21	3	0	0	0	0.46377	1	12570	12570		45.952	6.6991	1	57751	+		24956	26933	20411	20435	27793	27793					0.13091532147245744
KNCILLVRL	9	Unmodified	_KNCILLVRL_					0	0	0			REV__ENST00000510078.5_1_3:129112637-129115133:-|nuORF	REV__ENST00000510078.5_1_3:129112637-129115133:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	536.338987	1070.66342	1.3964	0.00074897	4.805	0.0025771	6.2014	0.0033261	536.3416025321018	130.59	0.88988	129.47	128.92	129.81	-1.1202	-0.01868	0.0010883	NaN	45.952	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10435	+		24957	26933	20411	20435							0.13091532147245744
KNCILLVRL	9	Unmodified	_KNCILLVRL_					0	0	0			REV__ENST00000510078.5_1_3:129112637-129115133:-|nuORF	REV__ENST00000510078.5_1_3:129112637-129115133:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	536.338987	1070.66342	2.5098	0.0013461	3.4926	0.0018732	6.0024	0.0032193	536.3407702142576	130.99	1.0366	129.51	129.21	130.24	-1.4779	0.01868	-0.00031951	NaN	45.952	43	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57751	+		24958	26933	20411	20435							0.13091532147245744
KNCLLLLI	8	Unmodified	_KNCLLLLI_					0	0	0		ENST00000498340.5_1_2:33812358-33824321:-|nuORF	ENST00000498340.5_1_2:33812358-33824321:-|nuORF	ENST00000498340.5_1_2:33812358-33824321:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	465.2868347167969	2	465.296256	928.57796	0.39149	0.00018216	2.2782	0.00106	2.6697	0.0012422	465.29657419134577	125.11	0.29585	124.87	124.71	125.01	-0.2359					7	5	2	0	0	0	0.028476	1	12195	12195		37.028	0	1	27616			24959	12822	20412	20436	27794	27794					0.11081366961582262
KNDANCDCF	9	Unmodified	_KNDANCDCF_					0	0	0		ENSG00000149256|ENST00000278550|TENM4	ENSG00000149256|ENST00000278550|TENM4	ENSG00000149256|ENST00000278550|TENM4	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.283447265625	2	515.191859	1028.36917	0.94552	0.00048712	4.28	0.002205	5.2255	0.0026921	515.1929811989357	106.59	0.15667	105.32	105.22	105.37	-1.267					4	2	2	0	0	0	0.027462	1	7516	7516		35.618	18.253	1	6618.6			24960	5447	20413	20437	27795	27795					-0.14388449404827952
KNDAPSDFNL	10	Unmodified	_KNDAPSDFNL_					0	0	0			REV__nc|ENSG00000186638|Q5T7B8-4|KIF24	REV__nc|ENSG00000186638|Q5T7B8-4|KIF24	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.8289794921875	2	560.767103	1119.51965	0.23008	0.00012902	-1.8152	-0.0010179	-1.5851	-0.00088889	560.7658854920797	69.226	2.4581	69.226	68.692	71.15	0					112	60	2	0	0	0	0.026681	1	6842	6842		36.447	15.5	1	1109900	+		24961	22604	20414	20438	27796	27796					-0.03532643149992509
KNDDIHILK	9	Unmodified	_KNDDIHILK_					0	0	0			REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	MULTI-MSMS	OvCa99_classI_Rep5	1	548.3118286132812	2	548.31148	1094.60841	1.6207	0.00088863	-3.3197	-0.0018202	-1.699	-0.00093158	548.309506146691	126.52	0.82384	126.52	126.18	127.01	0					41	17	3	0	0	0	0.3249	1	14635	14635		60.118	1.8883	1	603140	+		24962	23220	20415	20439	27797	27797					0.06488816880323611
KNDDIHILK	9	Unmodified	_KNDDIHILK_					0	0	0			REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	548.31148	1094.60841	1.6207	0.00088863	-3.3197	-0.0018202	-1.699	-0.00093158	548.309506146691	126.52	0.82384	126.52	126.18	127.01	0	-0.20296	0.00047378	NaN	60.118	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	603140	+		24963	23220	20415	20439							0.06488816880323611
KNDDIHILK	9	Unmodified	_KNDDIHILK_					0	0	0			REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	MULTI-MATCH	OvCa9_classI_Rep2	2		2	548.31148	1094.60841	1.0492	0.00057529	-4.797	-0.0026303	-3.7478	-0.002055	548.3089710458412	126.83	0.59376	126.59	126.39	126.99	-0.2359	-0.12518	-0.0011463	NaN	60.118	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18184	+		24964	23220	20415	20439							0.06488816880323611
KNDDIHILK	9	Unmodified	_KNDDIHILK_					0	0	0			REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	MULTI-MATCH	OvCa9_classI_Rep3	3		2	548.31148	1094.60841	0.46371	0.00025426	-4.3327	-0.0023757	-3.869	-0.0021214	548.3091119512421	127.96	0.94973	126.87	126.57	127.52	-1.0933	0.15016	-0.00063719	NaN	60.118	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19634	+		24965	23220	20415	20439							0.06488816880323611
KNDDIHILK	9	Unmodified	_KNDDIHILK_					0	0	0			REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	548.31148	1094.60841	-0.28865	-0.00015827	-3.6914	-0.002024	-3.98	-0.0021823	548.3096139635265	128.34	0.82445	126.9	126.44	127.27	-1.4386	0.17797	6.6168E-05	NaN	60.118	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32074	+		24966	23220	20415	20439							0.06488816880323611
KNDEIAEPN	9	Unmodified	_KNDEIAEPN_					0	0	0			REV__ENSG00000113361|ENST00000265071|CDH6	REV__ENSG00000113361|ENST00000265071|CDH6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.2821655273438	2	515.246003	1028.47745	-1.6605	-0.00085559	-1.9668	-0.0010134	-3.6274	-0.001869	515.2446245164457	107.18	0.26251	105.3	105.17	105.43	-1.8785					6	4	2	0	0	0	0.027462	1	9766	9766		14.137	0	1	14586	+		24967	18147	20416	20440	27798	27798					-0.035646185583800616
KNDEKLLPS	9	Unmodified	_KNDEKLLPS_					0	0	0		ENST00000436625.1_1_7:63930096-63930567:+|nuORF	ENST00000436625.1_1_7:63930096-63930567:+|nuORF	ENST00000436625.1_1_7:63930096-63930567:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.280517578125	2	522.290214	1042.56587	-0.7528	-0.00039318	3.6504	0.0019066	2.8976	0.0015134	522.2921602580094	76.732	0.67245	73.793	73.645	74.317	-2.9389					20	13	2	0	0	0	0.027462	1	6141	6141		31.53	0	1	78879			24968	11879	20417	20441	27799	27799					0.04629421752088092
KNDIVEIIV	9	Unmodified	_KNDIVEIIV_					0	0	0		tr|A0A7D6VZ76|A0A7D6VZ76_9CLOTExonucleasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18555PE=4SV=1	tr|A0A7D6VZ76|A0A7D6VZ76_9CLOTExonucleasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18555PE=4SV=1	tr|A0A7D6VZ76|A0A7D6VZ76_9CLOTExonucleasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18555PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.815185546875	2	521.810782	1041.60701	0.46315	0.00024168	-4.3279	-0.0022583	-3.8648	-0.0020167	521.8082052773308	110.6	1.0866	110.43	110.25	111.34	-0.17237					29	21	2	0	0	0	0.027441	1	10409	10409		49.442	3.4896	1	87351			24969	35352	20418	20442	27800	27800					0.0878718279154782
KNDKKVLKI	9	Unmodified	_KNDKKVLKI_					0	0	0			REV__tr|A0A7D6VP54|A0A7D6VP54_9CLOT5'-nucleotidaseC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17410PE=4SV=1	REV__tr|A0A7D6VP54|A0A7D6VP54_9CLOT5'-nucleotidaseC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17410PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.3712768554688	2	543.355691	1084.69683	-1.4261	-0.00077489	1.0051	0.00054615	-0.42098	-0.00022874	543.3560794583125	40.925	0.72789	37.971	37.841	38.569	-2.9541					22	13	2	0	0	0	0.02744	1	1811	1811		52.937	0	1	41517	+		24970	31230	20419	20443	27801	27801					0.1578685719080113
KNDLIVID	8	Unmodified	_KNDLIVID_					0	0	0			REV__tr|A0A7D6VWJ8|A0A7D6VWJ8_9CLOTFMN-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08625PE=4SV=1	REV__tr|A0A7D6VWJ8|A0A7D6VWJ8_9CLOTFMN-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08625PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.2973327636719	2	465.26875	928.522947	-1.6473	-0.00076645	2.82	0.001312	1.1726	0.00054559	465.26980688356826	107.23	0.47091	105.35	105.17	105.64	-1.8785					10	8	2	0	0	0	0.028476	1	9774	9774		49.442	3.4896	1	13680	+		24971	31749	20420	20444	27802	27802					0.055826516946467564
KNDTLVKNL	9	Unmodified	_KNDTLVKNL_					0	0	0		tr|A0A7D6ZVK9|A0A7D6ZVK9_9CLOTGer(X)CfamilysporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04605PE=3SV=1	tr|A0A7D6ZVK9|A0A7D6ZVK9_9CLOTGer(X)CfamilysporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04605PE=3SV=1	tr|A0A7D6ZVK9|A0A7D6ZVK9_9CLOTGer(X)CfamilysporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04605PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.3099365234375	2	522.806031	1043.59751	-1.3579	-0.00070992	-3.7045	-0.0019367	-5.0624	-0.0026466	522.8042235575825	54.368	0.56307	51.121	50.825	51.388	-3.2474					21	10	3	0	0	0	0.027426	1	3334	3334		76.774	20.053	1	143470			24972	35805	20421	20445	27803	27803					0.07745414506052839
KNDVKATFF	9	Unmodified	_KNDVKATFF_					0	0	0		tr|A0A7D6W464|A0A7D6W464_9CLOTPolysaccharidedeacetylasefamilysporulationproteinPdaBOS=ClostridiumintestinaleOX=36845GN=pdaBPE=4SV=1	tr|A0A7D6W464|A0A7D6W464_9CLOTPolysaccharidedeacetylasefamilysporulationproteinPdaBOS=ClostridiumintestinaleOX=36845GN=pdaBPE=4SV=1	tr|A0A7D6W464|A0A7D6W464_9CLOTPolysaccharidedeacetylasefamilysporulationproteinPdaBOS=ClostridiumintestinaleOX=36845GN=pdaBPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	535.2861328125	2	535.287474	1068.5604	1.5626	0.00083643	1.0683	0.00057185	2.6309	0.0014083	535.2880941977756	93.218	0.87273	93.218	92.968	93.841	0					32	20	3	0	0	0	0.56189	1	10129	10129		36.447	0.82846	1	811610			24973	35471	20422	20446	27804	27804					0.028857429602794582
KNDYPFVTT	9	Unmodified	_KNDYPFVTT_					0	0	0			REV__tr|A0A7D6ZXW7|A0A7D6ZXW7_9CLOTAntisigmafactorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23600PE=4SV=1	REV__tr|A0A7D6ZXW7|A0A7D6ZXW7_9CLOTAntisigmafactorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23600PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.7861938476562	2	542.769114	1083.52368	-1.2482	-0.00067749	-3.0484	-0.0016546	-4.2966	-0.0023321	542.7674476503956	92.029	0.71114	89.486	89.162	89.873	-2.5425					15	13	2	0	0	0	0.027462	1	7960	7960		25.574	1.0549	1	16235	+		24974	32349	20423	20447	27805	27805					-0.014745536562941197
KNDYPFVTT	9	Unmodified	_KNDYPFVTT_					0	0	0			REV__tr|A0A7D6ZXW7|A0A7D6ZXW7_9CLOTAntisigmafactorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23600PE=4SV=1	REV__tr|A0A7D6ZXW7|A0A7D6ZXW7_9CLOTAntisigmafactorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23600PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.769114	1083.52368	0.88992	0.00048302	-4.6492	-0.0025234	-3.7593	-0.0020404	542.7653414949716	90.853	0.61768	89.617	89.39	90.007	-1.2355	0.10836	-0.0013627	NaN	32.812	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8725.3	+		24975	32349	20423	20447							-0.014745536562941197
KNDYPFVTT	9	Unmodified	_KNDYPFVTT_					0	0	0			REV__tr|A0A7D6ZXW7|A0A7D6ZXW7_9CLOTAntisigmafactorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23600PE=4SV=1	REV__tr|A0A7D6ZXW7|A0A7D6ZXW7_9CLOTAntisigmafactorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23600PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	542.769114	1083.52368	-0.66811	-0.00036263	-3.5056	-0.0019027	-4.1737	-0.0022654	542.7671044195874	91.447	0.65907	89.423	89.231	89.89	-2.0241	-0.08574	-0.00012128	NaN	32.812	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22712	+		24976	32349	20423	20447							-0.014745536562941197
KNEAKRREVL	10	Unmodified	_KNEAKRREVL_					0	0	0		nc|ENSG00000171365|P51795-1|CLCN5;ENSG00000171365|ENST00000376091|CLCN5	nc|ENSG00000171365|P51795-1|CLCN5	nc|ENSG00000171365|P51795-1|CLCN5	MULTI-SECPEP	OvCa9_classI_Rep2	2	414.8983154296875	3	414.914083	1241.72042	0.77173	0.0003202	-1.174	-0.00048712	-0.40228	-0.00016691	414.91367457403777	40.479	0.49207	37.769	37.65	38.142	-2.7097					11	9	2	0	0	0	0.02689	1	2045	2045		39.873	4.7211	1	10324			24977	7191	20424	20448	27806	27806					0.10922670957324954
KNEALELSN	9	Unmodified	_KNEALELSN_					0	0	0			REV__tr|A0A7D6ZET1|A0A7D6ZET1_9CLOTDUF4364familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14935PE=4SV=1	REV__tr|A0A7D6ZET1|A0A7D6ZET1_9CLOTDUF4364familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14935PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.7721252441406	2	509.264196	1016.51384	-1.1386	-0.00057983	2.0239	0.0010307	0.88535	0.00045088	509.26471837985173	53.968	1.1782	50.721	50.415	51.593	-3.2474					37	22	3	0	0	0	0.027453	1	3368	3368		37.812	0	1	129450	+		24978	31949	20425	20449	27807	27807					0.006242583383141209
KNEGQLTDCVK	11	Unmodified	_KNEGQLTDCVK_					0	0	0			REV__nc|ENSG00000173230|Q14789|GOLGB1	REV__nc|ENSG00000173230|Q14789|GOLGB1	MULTI-MSMS	OvCa99_classI_Rep5	1	617.8090209960938	2	617.808445	1233.60234	0.27009	0.00016686	-2.2194	-0.0013711	-1.9493	-0.0012043	617.8070096150186	45.909	1.3145	45.909	45.624	46.938	0					66	29	5	0	0	0	0.49333	1	3191	3191		53.089	0	1	4644300	+		24979	21758	20426	20450	27808	27808					-0.005120694135257509
KNEKFLKGLDK	11	Unmodified	_KNEKFLKGLDK_					0	0	0		tr|A0A553SQI9|A0A553SQI9_NIACIproteinadenylyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_07785PE=4SV=1	tr|A0A553SQI9|A0A553SQI9_NIACIproteinadenylyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_07785PE=4SV=1	tr|A0A553SQI9|A0A553SQI9_NIACIproteinadenylyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_07785PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	440.5945739746094	3	440.594238	1318.76089	0.39563	0.00017431	0.41848	0.00018438	0.81411	0.00035869	440.5943102018112	36.396	0.81264	36.396	36.164	36.977	0					42	17	4	0	0	0	0.68391	1	1915	1915		35.178	1.0917	1	389240			24980	34167	20427	20451	27809	27809					0.11425592557088748
KNEKKQDLRLV	11	Unmodified	_KNEKKQDLRLV_					0	0	0		tr|A0A553ST37|A0A553ST37_NIACIDUF1565domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04340PE=3SV=1	tr|A0A553ST37|A0A553ST37_NIACIDUF1565domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04340PE=3SV=1	tr|A0A553ST37|A0A553ST37_NIACIDUF1565domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04340PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	457.6092224121094	3	457.608659	1369.80415	-3.7463	-0.0017143	2.2282	0.0010197	-1.518	-0.00069467	457.60971240856696	157.06	2.9403	156.83	155.39	158.33	-0.22696					220	89	3	0	0	0	0.72511	1	16038	16038		14.086	1.1285	1	46638			24981	34451	20428	20452	27810	27810					0.1340378233435331
KNEKLKKP	8	Unmodified	_KNEKLKKP_					0	0	0			REV__ENSG00000116254|ENST00000262450|CHD5	REV__ENSG00000116254|ENST00000262450|CHD5	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.76953125	2	492.813659	983.612765	1.9154	0.00094396	1.2589	0.00062039	3.1743	0.0015643	492.81394246885503	100.42	0.16463	100.42	100.28	100.44	0					5	3	2	0	0	0	0.028476	1	11119	11119		40.778	8.8233	1	143440	+		24982	18295	20429	20453	27811	27811					0.12030326093884014
KNEKLLSKAS	10	Unmodified	_KNEKLLSKAS_					0	0	0		nc|ENSG00000164197|Q86T96-2|RNF180;ENSG00000164197|ENST00000389100|RNF180	nc|ENSG00000164197|Q86T96-2|RNF180	nc|ENSG00000164197|Q86T96-2|RNF180	MULTI-MSMS	OvCa9_classI_Rep2	2	559.3334350585938	2	559.332413	1116.65027	0.022736	1.2717E-05	1.9367	0.0010832	1.9594	0.001096	559.3338875168262	104.92	4.6529	104.34	102.39	107.04	-0.57639					237	93	5	0	0	0	0.26424	1	9765	9765		85.161	10.118	1	7580000			24983	6433	20430	20454	27812	27812					0.09661372568848492
KNELANII	8	Unmodified	_KNELANII_					0	0	0			REV__tr|A0A7D6ZWH4|A0A7D6ZWH4_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17800PE=4SV=1	REV__tr|A0A7D6ZWH4|A0A7D6ZWH4_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17800PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.2421569824219	2	457.768917	913.523281	-0.51833	-0.00023727	0.78056	0.00035732	0.26224	0.00012004	457.76882512429256	59.272	0.6409	59.272	58.932	59.573	0					22	16	2	0	0	0	0.028476	1	5117	5117		47.916	9.1095	1	410960	+		24984	32288	20431	20455	27813	27813					0.06306071414530834
KNEMELPF	8	Unmodified	_KNEMELPF_					0	0	0			REV__ENSG00000086570|ENST00000261800|FAT2	REV__ENSG00000086570|ENST00000261800|FAT2	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.8310852050781	2	504.24696	1006.47937	0.1939	9.7775E-05	-2.621	-0.0013216	-2.4271	-0.0012239	504.2445930345069	58.073	1.3784	58.073	57.396	58.774	0					59	32	4	0	0	0	0.028476	1	4979	4979		34.173	0	1	1154000	+		24985	17150	20432	20456	27814	27814					-0.023612810741155954
KNEPISKVAP	10	Unmodified	_KNEPISKVAP_					0	0	0		ENST00000495088.1_1_3:72821852-72822317:+|nuORF	ENST00000495088.1_1_3:72821852-72822317:+|nuORF	ENST00000495088.1_1_3:72821852-72822317:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.3400268554688	2	541.813856	1081.61316	-0.58505	-0.00031699	0.46351	0.00025114	-0.12154	-6.5851E-05	541.8139046218677	33.799	0.48242	33.799	33.583	34.065	0					19	9	3	0	0	0	0.026931	1	1576	1576		23.523	0	1	251170			24986	12769	20433	20457	27815	27815					0.07561701023087153
KNEPLASYLGY	11	Unmodified	_KNEPLASYLGY_					0	0	0		ENSG00000213949|ENST00000282588|ITGA1;ITGA1|p.L794Sfs*7|1|0.04|ENSG00000213949|chr5:52922862-52922863|-/T|frameshift_variant	ENSG00000213949|ENST00000282588|ITGA1	ENSG00000213949|ENST00000282588|ITGA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.752685546875	3	418.883677	1253.6292	0.63018	0.00026397	2.3419	0.00098098	2.9721	0.0012449	418.88440914347694	63.029	0.87978	63.029	62.378	63.257	0					33	21	2	0	0	0	0.025551	1	5556	5556		24.232	0	1	124310			24987	9157	20434	20458	27816	27816					0.012533624693332968
KNEQIAHLY	9	Unmodified	_KNEQIAHLY_					0	0	0			REV__ENSG00000111850|ENST00000392863|SMIM8	REV__ENSG00000111850|ENST00000392863|SMIM8	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.3004150390625	2	558.29583	1114.57711	-1.4011	-0.00078222	-2.8082	-0.0015678	-4.2093	-0.00235	558.2942478599156	108.1	1.0004	106.22	105.97	106.97	-1.8785					37	19	2	0	0	0	0.56889	1	9900	9900		35.618	1.4457	1	68370	+		24988	18064	20435	20459	27817	27817					0.024402438462402642
KNEQLKQMI	9	Unmodified	_KNEQLKQMI_					0	0	0		tr|A0A553SRU0|A0A553SRU0_NIACIPhytoenedesaturaseOS=NialliacirculansOX=1397GN=crtIPE=3SV=1	tr|A0A553SRU0|A0A553SRU0_NIACIPhytoenedesaturaseOS=NialliacirculansOX=1397GN=crtIPE=3SV=1	tr|A0A553SRU0|A0A553SRU0_NIACIPhytoenedesaturaseOS=NialliacirculansOX=1397GN=crtIPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.3121948242188	2	566.313166	1130.61178	1.1399	0.00064555	-1.0539	-0.00059685	0.085989	4.8697E-05	566.3125295267077	60.336	1.3875	56.906	56.65	58.038	-3.43					81	27	4	0	0	0	0.13504	1	4115	4115		87.696	10.379	1	1427600			24989	34296	20436	20460	27818	27818					0.05169743662690962
KNERACID	8	Unmodified	_KNERACID_					0	0	0		nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B;CACNA1B|p.Y1583Tfs*63|1|0.07|ENSG00000148408|chr9:138073559-138073559|C/-|frameshift_variant;nc|ENSG00000198216|Q15878-2|CACNA1E;nc|ENSG00000198216|Q15878-3|CACNA1E;ENSG00000198216|ENST00000367573|CACNA1E;nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;ENSG00000141837|ENST00000360228|CACNA1A	nc|ENSG00000148408|Q00975-2|CACNA1B;nc|ENSG00000198216|Q15878-2|CACNA1E	nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-MSMS	OvCa99_classI_Rep5	1	474.7348327636719	2	474.732009	947.449465	1.7775	0.00084385	0.97549	0.0004631	2.753	0.0013069	474.7323318887259	122.71	0.88103	122.71	122.49	123.37	0					36	18	3	0	0	0	0.65062	1	14128	14128		53.351	3.3269	1	432860			24990	8797;5410	20437	20461	27819	27819					-0.02636220019473967
KNERLKSSL	9	Unmodified	_KNERLKSSL_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-MSMS	OvCa99_classI_Rep5	1	537.8172607421875	2	537.81693	1073.61931	0.079629	4.2826E-05	1.0239	0.00055066	1.1035	0.00059349	537.8174516010757	31.847	0.94386	31.847	31.559	32.503	0					36	18	4	0	0	0	0.50149	1	1342	1342		42.396	1.8235	1	697390	+		24991	17095	20438	20462	27820	27820					0.08544219254599739
KNETGDLEIL	10	Unmodified	_KNETGDLEIL_					0	0	0			REV__tr|A0A7D6VSC3|A0A7D6VSC3_9CLOTEnolaseOS=ClostridiumintestinaleOX=36845GN=enoPE=3SV=1	REV__tr|A0A7D6VSC3|A0A7D6VSC3_9CLOTEnolaseOS=ClostridiumintestinaleOX=36845GN=enoPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.2979736328125	2	566.298236	1130.58192	0.65693	0.00037202	-3.5967	-0.0020368	-2.9397	-0.0016648	566.2962153602747	102.09	1.5172	99.889	99.471	100.99	-2.1994					58	28	3	0	0	0	0.45822	1	9201	9201		60.118	8.9256	1	297420	+		24992	31486	20439	20463	27821	27821					0.021850831983329044
KNEVHEREG	9	Unmodified	_KNEVHEREG_					0	0	0		ENSG00000159231|ENST00000290354|CBR3	ENSG00000159231|ENST00000290354|CBR3	ENSG00000159231|ENST00000290354|CBR3	MULTI-SECPEP	OvCa9_classI_Rep2	2	548.3168334960938	2	549.270344	1096.52613	-0.14968	-8.2214E-05	1.6276	0.00089399	1.4779	0.00081177	549.2710399298745	74.106	0.57716	72.135	71.904	72.481	-1.9711					15	10	2	0	0	0	0.027432	1	6090	6090		58.23	5.2932	1	17930			24993	6000	20440	20464	27822	27822					-0.018267051986185834
KNEVLKYY	8	Unmodified	_KNEVLKYY_					0	0	0		tr|A0A7D6VTT8|A0A7D6VTT8_9CLOTAlpha/betafoldhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12745PE=4SV=1	tr|A0A7D6VTT8|A0A7D6VTT8_9CLOTAlpha/betafoldhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12745PE=4SV=1	tr|A0A7D6VTT8|A0A7D6VTT8_9CLOTAlpha/betafoldhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12745PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	528.7888793945312	2	528.78985	1055.56515	-0.20402	-0.00010789	-3.5651	-0.0018852	-3.7691	-0.0019931	528.7878061663115	56.601	1.0957	56.601	56.3	57.396	0					66	25	4	0	0	0	0.42208	1	4726	4726		85.359	8.0419	1	9284300			24994	35144	20441	20465	27823	27823					0.03958627103043
KNEYIRKN	8	Unmodified	_KNEYIRKN_					0	0	0			REV__tr|A0A7D6ZS47|A0A7D6ZS47_9CLOTSite-specificintegraseOS=ClostridiumintestinaleOX=36845GN=HZF06_06345PE=3SV=1	REV__tr|A0A7D6ZS47|A0A7D6ZS47_9CLOTSite-specificintegraseOS=ClostridiumintestinaleOX=36845GN=HZF06_06345PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.7978515625	2	532.795998	1063.57744	-0.72238	-0.00038488	-0.11191	-5.9625E-05	-0.83429	-0.0004445	532.7958144484369	64.721	1.6985	61.236	60.627	62.325	-3.4854					76	34	3	0	0	0	0.65062	1	4625	4625		53.351	2.016	1	470820	+		24995	32176	20442	20466	27824	27824					0.048196635660815446
KNFFEILAEI	10	Unmodified	_KNFFEILAEI_					0	0	0			REV__tr|A0A7D6VZA3|A0A7D6VZA3_9CLOTNAD(P)-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18870PE=3SV=1	REV__tr|A0A7D6VZA3|A0A7D6VZA3_9CLOTNAD(P)-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18870PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	612.3385009765625	2	612.337164	1222.65977	-0.94157	-0.00057656	-3.529	-0.002161	-4.4706	-0.0027375	612.3349196366964	104.56	0.72243	104.56	104.24	104.96	0					26	16	2	0	0	0	0.47142	1	11711	11711		58.23	5.141	1	958790	+		24996	31835	20443	20467	27825	27825					0.05735140854380916
KNFFEILAEI	10	Unmodified	_KNFFEILAEI_					0	0	0			REV__tr|A0A7D6VZA3|A0A7D6VZA3_9CLOTNAD(P)-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18870PE=3SV=1	REV__tr|A0A7D6VZA3|A0A7D6VZA3_9CLOTNAD(P)-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18870PE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	612.337164	1222.65977	-0.94157	-0.00057656	-3.529	-0.002161	-4.4706	-0.0027375	612.3349196366964	104.56	0.72243	104.56	104.24	104.96	0	0	0	NaN	58.23	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	958790	+		24997	31835	20443	20467							0.05735140854380916
KNFLKNKIQ	9	Unmodified	_KNFLKNKIQ_					0	0	0		tr|A0A553SQ47|A0A553SQ47_NIACIDEAD/DEAHboxhelicaseOS=NialliacirculansOX=1397GN=CEQ21_20270PE=4SV=1	tr|A0A553SQ47|A0A553SQ47_NIACIDEAD/DEAHboxhelicaseOS=NialliacirculansOX=1397GN=CEQ21_20270PE=4SV=1	tr|A0A553SQ47|A0A553SQ47_NIACIDEAD/DEAHboxhelicaseOS=NialliacirculansOX=1397GN=CEQ21_20270PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.8106079101562	2	566.84549	1131.67643	1.3498	0.00076513	-1.9941	-0.0011303	-0.64428	-0.00036521	566.8442959206185	114.54	0.83736	113.14	112.89	113.72	-1.3977					34	15	3	0	0	0	0.027462	1	10666	10666		21.96	6.3181	1	38275			24998	34118	20444	20468	27826	27826					0.11585686530997918
KNFNLEVSL	9	Unmodified	_KNFNLEVSL_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	OvCa99_classI_Rep5	1	532.2932739257812	2	532.292756	1062.57096	2.6437	0.0014072	1.0888	0.00057959	3.7325	0.0019868	532.2933094836837	102.74	0.51002	102.74	102.5	103.01	0					29	11	3	0	0	0	0.33652	1	11479	11479		58.782	0.97068	1	2306300			24999	3631	20445	20469	27827	27827					0.04217725614716983
KNFQHAVQ	8	Unmodified	_KNFQHAVQ_					0	0	0		ENST00000403263.5_1_2:206863772-206864039:-|nuORF	ENST00000403263.5_1_2:206863772-206864039:-|nuORF	ENST00000403263.5_1_2:206863772-206864039:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.2961120605469	2	486.256508	970.498464	1.3528	0.00065778	0.48464	0.00023566	1.8374	0.00089345	486.257038302475	83.649	0.67139	83.649	83.293	83.965	0					18	15	2	0	0	0	0.028476	1	8720	8720		18.324	0	1	262740			25000	11438	20446	20470	27828	27828					0.012034363317980024
KNFQPFALN	9	Unmodified	_KNFQPFALN_					0	0	0		ENSG00000153561|ENST00000283632|RMND5A	ENSG00000153561|ENST00000283632|RMND5A	ENSG00000153561|ENST00000283632|RMND5A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.8280029296875	2	539.787641	1077.56073	-1.4348	-0.00077446	2.7246	0.0014707	1.2899	0.00069627	539.7889307719186	93.345	0.60745	90.838	90.563	91.171	-2.5072					26	11	3	0	0	0	0.027448	1	8142	8142		27.882	9.5578	1	512580			25001	5684	20447	20471	27829	27829					0.025051626801541715
KNFSVTMLF	9	Unmodified	_KNFSVTMLF_					0	0	0			REV__ENST00000574700.5_1_17:5384531-5389490:-|nuORF	REV__ENST00000574700.5_1_17:5384531-5389490:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	543.7877807617188	2	543.786253	1085.55795	1.4606	0.00079426	0.93893	0.00051058	2.3995	0.0013048	543.7865195416019	115.23	0.74821	115.23	114.93	115.68	0					38	15	3	0	0	0	0.3076	1	13178	13178		62.107	7.3311	1	783470	+		25002	27758	20448	20472	27830	27830					0.018595712309661394
KNFVENLKK	9	Unmodified	_KNFVENLKK_					0	0	0			REV__tr|A0A7D6VQY9|A0A7D6VQY9_9CLOTRiboflavinbiosynthesisproteinRibDOS=ClostridiumintestinaleOX=36845GN=ribDPE=3SV=1	REV__tr|A0A7D6VQY9|A0A7D6VQY9_9CLOTRiboflavinbiosynthesisproteinRibDOS=ClostridiumintestinaleOX=36845GN=ribDPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.3582153320312	2	560.329673	1118.64479	0.96161	0.00053882	-1.2373	-0.00069328	-0.27566	-0.00015446	560.3287593516267	98.519	1.6914	96.141	95.773	97.465	-2.3786					59	32	3	0	0	0	0.027459	1	8848	8848		52.937	0	1	82372	+		25003	31372	20449	20473	27831	27831					0.09021693777026485
KNFVPGKIEP	10	Unmodified	_KNFVPGKIEP_					0	0	0		ENSG00000255561|ENST00000260257|FDXACB1;nc|ENSG00000255561|Q9BRP7-2|FDXACB1	ENSG00000255561|ENST00000260257|FDXACB1	ENSG00000255561|ENST00000260257|FDXACB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.8051147460938	2	564.824224	1127.63389	0.084631	4.7801E-05	-1.128	-0.00063715	-1.0434	-0.00058935	564.8234707318347	71.378	0.31624	71.378	71.191	71.507	0					10	7	2	0	0	0	0.026849	1	6870	6870		25.574	1.3713	1	242840			25004	9458	20450	20474	27832	27832					0.07518291402766408
KNGAYTLPKSI	11	Unmodified	_KNGAYTLPKSI_					0	0	0		ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	596.8187866210938	2	596.340238	1190.66592	-0.50575	-0.0003016	1.4542	0.00086722	0.94849	0.00056562	596.3411180691177	54.935	1.6794	51.688	51.388	53.067	-3.2474					72	32	4	0	0	0	0.025656	1	3562	3562		47.96	31.486	1	144140			25005	9412	20451	20475	27833	27833					0.07821659085880128
KNGDYDQTQWR	11	Unmodified	_KNGDYDQTQWR_					0	0	0			REV__ENSG00000124019|ENST00000409685|FAM124B	REV__ENSG00000124019|ENST00000409685|FAM124B	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.2812805175781	3	470.88474	1409.63239	0.023219	1.0933E-05	-0.74902	-0.0003527	-0.7258	-0.00034177	471.2186722988442	68.739	0.20982	68.739	68.606	68.815	0					6	4	2	0	0	0	0.026324	1	6509	6509		16.53	0	1	102310	+		25006	18660	20452	20476	27834	27834					-0.056039944239728356
KNGEGPQVSI	10	Unmodified	_KNGEGPQVSI_					0	0	0			REV__ENSG00000163029|ENST00000448223|SMC6	REV__ENSG00000163029|ENST00000448223|SMC6	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.7728881835938	2	514.772188	1027.52982	-0.92242	-0.00047484	0.85007	0.00043759	-0.07235	-3.7244E-05	514.7724622149109	70.371	1.3105	66.89	66.589	67.899	-3.4812					70	26	4	0	0	0	0.32141	1	5318	5318		78.264	1.4171	1	1471700	+		25007	20801	20453	20477	27835	27835					0.017159645752371944
KNGEGPQVSI	10	Unmodified	_KNGEGPQVSI_					0	0	0			REV__ENSG00000163029|ENST00000448223|SMC6	REV__ENSG00000163029|ENST00000448223|SMC6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.772188	1027.52982	-0.28964	-0.0001491	0.33845	0.00017423	0.048811	2.5127E-05	514.7721338211803	69.53	1.6485	66.91	66.416	68.064	-2.6203	0.0098568	-0.00017755	NaN	78.264	61	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	294920	+		25008	20801	20453	20477							0.017159645752371944
KNGEGPQVSI	10	Unmodified	_KNGEGPQVSI_					0	0	0			REV__ENSG00000163029|ENST00000448223|SMC6	REV__ENSG00000163029|ENST00000448223|SMC6	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	514.772188	1027.52982	-0.92242	-0.00047484	0.85007	0.00043759	-0.07235	-3.7244E-05	514.7724622149109	70.371	1.3105	66.89	66.589	67.899	-3.4812	-0.0098568	0.00034918	NaN	78.264	70	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1471700	+		25009	20801	20453	20477							0.017159645752371944
KNGFSVKCQF	10	Carbamidomethyl (C)	_KNGFSVKC(Carbamidomethyl (C))QF_	KNGFSVKC(1)QF		KNGFSVKC(120)QF		0	1	0			REV__nc|ENSG00000179709|Q86W28-2|NLRP8	REV__nc|ENSG00000179709|Q86W28-2|NLRP8	MULTI-MSMS	OvCa99_classI_Rep5	1	607.8027954101562	2	607.802965	1213.59138	-0.049743	-3.0234E-05	-2.9828	-0.001813	-3.0326	-0.0018432	607.8011688367612	73.176	2.7238	73.176	72.877	75.601	0					204	68	6	0	0	0	0.09252	1	7144	7144		115.49	11.48	1	98437000	+		25010	22137	20454	20478	27836	27836	255				-0.006874269971376634
KNGFSVKCQF	10	Carbamidomethyl (C)	_KNGFSVKC(Carbamidomethyl (C))QF_					0	1	0			REV__nc|ENSG00000179709|Q86W28-2|NLRP8	REV__nc|ENSG00000179709|Q86W28-2|NLRP8	MULTI-MATCH	OvCa9_classI_Rep2	2		2	607.802965	1213.59138	-0.97803	-0.00059445	0.95553	0.00058078	-0.022502	-1.3677E-05	607.803717123922	74.774	0.72516	72.803	72.534	73.259	-1.9711	-0.15491	0.004619	NaN	115.49	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15434	+		25011	22137	20454	20478			255				-0.006874269971376634
KNGFSVKCQF	10	Carbamidomethyl (C)	_KNGFSVKC(Carbamidomethyl (C))QF_					0	1	0			REV__nc|ENSG00000179709|Q86W28-2|NLRP8	REV__nc|ENSG00000179709|Q86W28-2|NLRP8	MULTI-MATCH	OvCa9_classI_Rep3	3		2	607.802965	1213.59138	1.1065	0.00067254	-3.1279	-0.0019011	-2.0214	-0.0012286	607.8007490552282	75.305	0.49387	72.895	72.631	73.125	-2.4106	-0.062941	-0.00034475	NaN	115.49	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32325	+		25012	22137	20454	20478			255				-0.006874269971376634
KNGIAKKPPF	10	Unmodified	_KNGIAKKPPF_					0	0	0			REV__nc|ENSG00000048471|Q8TEQ0-2|SNX29	REV__nc|ENSG00000048471|Q8TEQ0-2|SNX29	MULTI-MSMS	OvCa9_classI_Rep2	2	550.3357543945312	2	550.334759	1098.65496	0.57262	0.00031513	1.8332	0.0010089	2.4058	0.001324	550.3357316353752	66.746	1.4881	64.051	63.617	65.105	-2.6958					65	29	3	0	0	0	0.6104	1	5189	5189		40.778	11.608	1	370560	+		25013	16670	20455	20479	27837	27837					0.10958301502250833
KNGIHLRLR	9	Unmodified	_KNGIHLRLR_					0	0	0		ENSG00000162365|ENST00000371891|CYP4A22;ENSG00000187048|ENST00000310638|CYP4A11	ENSG00000162365|ENST00000371891|CYP4A22	ENSG00000162365|ENST00000371891|CYP4A22	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.813232421875	2	553.848899	1105.68324	-0.82528	-0.00045708	-1.1382	-0.00063038	-1.9635	-0.0010875	553.8491074634661	45.479	1.563	42.441	41.765	43.328	-3.0385					79	29	4	0	0	0	0.027462	1	2363	2363		17.365	8.5426	1	91736			25014	6171	20456	20480	27838	27838					0.13463044202194396
KNGKEKEFE	9	Unmodified	_KNGKEKEFE_					0	0	0			REV__ENSG00000163728|ENST00000296015|TTC14	REV__ENSG00000163728|ENST00000296015|TTC14	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.7736206054688	2	554.785296	1107.55604	1.3915	0.00077201	-0.37939	-0.00021048	1.0122	0.00056153	554.7847860455613	96.821	1.2532	94.396	94.118	95.371	-2.4256					64	24	3	0	0	0	0.027462	1	8664	8664		39.253	2.8061	1	210960	+		25015	20879	20457	20481	27839	27839					0.006562337466903045
KNGKEKEFE	9	Unmodified	_KNGKEKEFE_					0	0	0			REV__ENSG00000163728|ENST00000296015|TTC14	REV__ENSG00000163728|ENST00000296015|TTC14	MULTI-MATCH	OvCa9_classI_Rep2	2		2	554.785296	1107.55604	0.57507	0.00031904	0.23211	0.00012877	0.80718	0.00044781	554.7848176975223	95.493	1.2412	94.465	94.12	95.361	-1.0281	0.062855	-0.000914	NaN	39.253	70	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126100	+		25016	20879	20457	20481							0.006562337466903045
KNGKEKEFE	9	Unmodified	_KNGKEKEFE_					0	0	0			REV__ENSG00000163728|ENST00000296015|TTC14	REV__ENSG00000163728|ENST00000296015|TTC14	MULTI-MATCH	OvCa9_classI_Rep3	3		2	554.785296	1107.55604	-1.2836	-0.00071212	2.0451	0.0011346	0.76148	0.00042246	554.7861384954091	96.173	1.0675	94.345	94.123	95.191	-1.8286	-0.056976	0.0010976	NaN	39.253	45	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220500	+		25017	20879	20457	20481							0.006562337466903045
KNGKGIAII	9	Unmodified	_KNGKGIAII_					0	0	0			REV__tr|A0A553SNL6|A0A553SNL6_NIACI3'-phosphate/5'-hydroxynucleicacidligaseOS=NialliacirculansOX=1397GN=CEQ21_24700PE=4SV=1	REV__tr|A0A553SNL6|A0A553SNL6_NIACI3'-phosphate/5'-hydroxynucleicacidligaseOS=NialliacirculansOX=1397GN=CEQ21_24700PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	457.776611328125	2	457.295102	912.575651	0.2987	0.00013659	-1.0467	-0.00047867	-0.74804	-0.00034207	457.2944138725913	103.89	0.62749	102.45	102.24	102.86	-1.4347					20	11	2	0	0	0	0.027462	1	7190	7190		10.866	0	1	42879	+		25018	30431	20458	20482	27840	27840					0.11586654548113984
KNGNYFAI	8	Unmodified	_KNGNYFAI_					0	0	0			REV__ENSG00000117528|ENST00000370214|ABCD3	REV__ENSG00000117528|ENST00000370214|ABCD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	463.7698669433594	2	463.74016	925.465767	-0.36739	-0.00017037	-3.6697	-0.0017018	-4.0371	-0.0018722	463.73835973468294	54.353	0.54277	54.353	54.089	54.632	0					26	12	3	0	0	0	0.028476	1	4396	4396		26.796	6.3143	1	917010	+		25019	18356	20459	20483	27841	27841					5.229208954915521E-05
KNGPVARVRSK	11	Unmodified	_KNGPVARVRSK_					0	0	0			REV__ENSG00000166439|ENST00000299563|RNF169	REV__ENSG00000166439|ENST00000299563|RNF169	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3698120117188	2	606.370195	1210.72584	-2.264	-0.0013728	1.1871	0.00071982	-1.0769	-0.00065302	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.72479	1	12583	12583		18.262	0	1	205770	+		25020	21194	20460	20484	27842	27842					0.12890394539772387
KNGQGKPRQDV	11	Unmodified	_KNGQGKPRQDV_					0	0	0			REV__ENST00000519428.5_1_8:64081436-64088020:+|nuORF	REV__ENST00000519428.5_1_8:64081436-64088020:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	409.578857421875	3	409.558187	1225.65273	0.18728	7.6704E-05	0.1016	4.161E-05	0.28888	0.00011831	409.5581889256916	27.216	0.24867	27.216	27.142	27.39	0					6	4	2	0	0	0	0.025908	1	794	794		21.78	7.6944	1	16450	+		25021	22523	20461	20485	27843	27843					0.04893221026509309
KNGQKAAVK	9	Unmodified	_KNGQKAAVK_					0	0	0		ENSG00000095777|ENST00000642920|MYO3A;nc|ENSG00000095777|Q8NEV4-2|MYO3A;chr10:26201305-26211843|273|11.34|0.44|4.7|+|ENST00000647478|MYO3A,MYO3A	ENSG00000095777|ENST00000642920|MYO3A	ENSG00000095777|ENST00000642920|MYO3A	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.28887939453125	2	472.287808	942.561064	-2.429	-0.0011472	2.5145	0.0011876	0.085513	4.0387E-05	472.2888822731472	151.46	1.6275	150.03	149.41	151.04	-1.4344					87	36	4	0	0	0	0.6653	1	14948	14948		24.203	3.7209	1	477430			25022	1939	20462	20486	27844	27844					0.08748582399982752
KNGQPATDV	9	Unmodified	_KNGQPATDV_					0	0	0			REV__nc|ENSG00000143390|P48382-2|RFX5	REV__nc|ENSG00000143390|P48382-2|RFX5	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.2874755859375	2	465.237981	928.461409	1.2028	0.00055957	3.5993	0.0016745	4.802	0.0022341	465.2391934973189	123.64	0.22644	123.64	123.47	123.69	0					7	4	2	0	0	0	0.027462	1	14257	14257		23.042	10.083	1	73002	+		25023	19838	20463	20487	27845	27845					-0.005682800046315606
KNGRHNPKPQ	10	Unmodified	_KNGRHNPKPQ_					0	0	0			REV__ENSG00000113555|ENST00000231484|PCDH12	REV__ENSG00000113555|ENST00000231484|PCDH12	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.3272705078125	2	588.323245	1174.63194	-0.065518	-3.8546E-05	-1.2009	-0.00070649	-1.2664	-0.00074503	588.3224770024757	60.88	0.4263	60.88	60.73	61.156	0					12	9	2	0	0	0	0.027056	1	5318	5318		20.947	0	1	439090	+		25024	18155	20464	20488	27846	27846					0.05160675437491591
KNGRRIIL	8	Unmodified	_KNGRRIIL_					0	0	0		ENST00000480653.5_1_20:32868842-32878296:-|nuORF;nc|ENSG00000101444|P23526-2|AHCY;USP6NL-AHCY|1|fusion;ENSG00000101444|ENST00000217426|AHCY	ENST00000480653.5_1_20:32868842-32878296:-|nuORF	ENST00000480653.5_1_20:32868842-32878296:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	485.32183837890625	2	485.319443	968.624333	0.8984	0.00043601	4.4177	0.002144	5.3161	0.00258	485.32170670896693	157.24	0.75632	157.24	157.05	157.8	0					19	14	2	0	0	0	0.73626	1	18441	18441		33.516	4.366	1	65502			25025	2177	20465	20489	27847	27847					0.13876567907891513
KNGSKKIIVM	10	Unmodified	_KNGSKKIIVM_					0	0	0			REV__L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|183|3|sense	REV__L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|183|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.3301391601562	2	559.341726	1116.6689	3.0518	0.001707	0.043167	2.4145E-05	3.095	0.0017311	559.3447343965385	98.85	0.85137	98.85	98.596	99.447	0					50	20	5	0	0	0	0.026826	1	10975	10975		44.377	5.1244	1	1460800	+		25026	28559	20466	20490	27848	27848					0.11523210939049022
KNGSLLIINP	10	Unmodified	_KNGSLLIINP_					0	0	0		tr|A0A553SL33|A0A553SL33_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_19875PE=4SV=1	tr|A0A553SL33|A0A553SL33_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_19875PE=4SV=1	tr|A0A553SL33|A0A553SL33_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_19875PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.2861328125	2	534.824224	1067.63389	-1.8158	-0.00097111	1.586	0.00084823	-0.22976	-0.00012288	534.8249746663703	53.756	0.5615	50.508	50.263	50.825	-3.2474					21	10	3	0	0	0	0.026653	1	3309	3309		49.536	7.1399	1	51210			25027	33680	20467	20491	27849	27849					0.10278291402732975
KNGSRLAII	9	Unmodified	_KNGSRLAII_					0	0	0			REV__ENST00000442955.2_1_9:6669517-6669934:-|nuORF	REV__ENST00000442955.2_1_9:6669517-6669934:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	486.30560302734375	2	486.303458	970.592364	0.60247	0.00029298	2.7724	0.0013482	3.3749	0.0016412	486.3047947264386	124.97	2.7662	124.74	124.37	127.13	-0.2359					156	55	5	0	0	0	0.44568	1	12214	12214		47.657	3.5405	1	3410600	+		25028	25861	20468	20492	27850	27850					0.10589155434081476
KNGTHIRRH	9	Unmodified	_KNGTHIRRH_					0	0	0			REV__ENSG00000143067|ENST00000421812|ZNF697	REV__ENSG00000143067|ENST00000421812|ZNF697	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.7665405273438	2	559.81813	1117.62171	0.17123	9.5855E-05	1.721	0.00096344	1.8922	0.0010593	559.8193549879635	61.915	0.50021	61.915	61.665	62.165	0					26	11	3	0	0	0	0.027462	1	5500	5500		20.947	0	1	1024500	+		25029	19813	20469	20493	27851	27851					0.06760112502934135
KNGVDQEII	9	Unmodified	_KNGVDQEII_					0	0	0		nc|ENSG00000289746|P0CF51|TRGC1	nc|ENSG00000289746|P0CF51|TRGC1	nc|ENSG00000289746|P0CF51|TRGC1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.27880859375	2	508.274564	1014.53457	0.92594	0.00047063	3.0777	0.0015643	4.0036	0.0020349	508.2759289105392	142.31	0.40082	142.31	142.04	142.44	0					12	7	2	0	0	0	0.33652	1	16632	16632		58.782	5.4305	1	37811			25030	15391	20470	20494	27852	27852					0.027888487179893673
KNGVKKTE	8	Unmodified	_KNGVKKTE_					0	0	0		ENSG00000082438|ENST00000652658|COBLL1;nc|ENSG00000082438|Q53SF7-3|COBLL1;nc|ENSG00000082438|Q53SF7-2|COBLL1	ENSG00000082438|ENST00000652658|COBLL1	ENSG00000082438|ENST00000652658|COBLL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	451.7506408691406	2	452.266542	902.51853	-0.69462	-0.00031416	0.68204	0.00030846	-0.012586	-5.6923E-06	452.26672891338814	34.78	1.6298	34.78	34.444	36.074	0					67	34	4	0	0	0	0.028476	1	1861	1861		40.778	3.6191	1	553100			25031	1678	20471	20495	27853	27853					0.0633718727174255
KNGYPALQDAL	11	Unmodified	_KNGYPALQDAL_					0	0	0			REV__tr|A0A553SJK2|A0A553SJK2_NIACIIron-containingalcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16940PE=4SV=1	REV__tr|A0A553SJK2|A0A553SJK2_NIACIIron-containingalcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16940PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	595.8529663085938	2	595.31422	1188.61389	-2.0184	-0.0012016	0.30142	0.00017944	-1.717	-0.0010222	595.3142164750736	88.014	1.1073	85.411	85.129	86.237	-2.6027					68	21	4	0	0	0	0.025306	1	7544	7544		45.022	0	1	247080	+		25032	30012	20472	20496	27854	27854					0.027124956721536364
KNHFESSPLPT	11	Unmodified	_KNHFESSPLPT_					0	0	0		KCNB1|p.C831Lfs*4|1|0.05|ENSG00000158445|chr20:49373069-49373070|-/G|frameshift_variant;ENSG00000158445|ENST00000371741|KCNB1	KCNB1|p.C831Lfs*4|1|0.05|ENSG00000158445|chr20:49373069-49373070|-/G|frameshift_variant	KCNB1|p.C831Lfs*4|1|0.05|ENSG00000158445|chr20:49373069-49373070|-/G|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	419.54962158203125	3	419.547177	1255.6197	0.23438	9.8335E-05	1.0893	0.00045703	1.3237	0.00055537	419.5476559666688	56.536	0.69759	56.536	56.178	56.875	0					36	16	3	0	0	0	0.65947	1	4705	4705		27.644	0	1	1182700			25033	5951	20473	20497	27855	27855					0.0021159418379284034
KNHFQEDEQFL	11	Unmodified	_KNHFQEDEQFL_					0	0	0		ENST00000443084.1_1_2:200524349-200524604:+|nuORF	ENST00000443084.1_1_2:200524349-200524604:+|nuORF	ENST00000443084.1_1_2:200524349-200524604:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.3203125	3	478.893124	1433.65754	0.087426	4.1867E-05	4.0694	0.0019488	4.1569	0.0019907	478.8952201750486	102.28	0.84254	100.08	99.78	100.62	-2.1994					24	15	3	0	0	0	0.025955	1	9214	9214		30.569	2.9249	1	33399			25034	11949	20474	20498	27856	27856					-0.041939396213820146
KNHIGTEIAPE	11	Unmodified	_KNHIGTEIAPE_					0	0	0		ENSG00000162669|ENST00000370425|HFM1;HFM1|p.F1400Lfs*25|1|0.44|ENSG00000162669|chr1:91262279-91262279|A/-|frameshift_variant	ENSG00000162669|ENST00000370425|HFM1	ENSG00000162669|ENST00000370425|HFM1	MULTI-MSMS	OvCa9_classI_Rep4_	4	604.8189697265625	2	604.817127	1207.6197	-0.047143	-2.8513E-05	-0.20522	-0.00012412	-0.25236	-0.00015263	604.8165736509299	48.437	1.4502	45.329	45.039	46.489	-3.1077					77	27	4	0	0	0	0.61983	1	2680	2680		42.864	0	1	364160			25035	6214	20475	20499	27857	27857					0.024195941838115687
KNHIIRFV	8	Unmodified	_KNHIIRFV_					0	0	0		tr|A0A553SSF2|A0A553SSF2_NIACILacIfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02795PE=4SV=1	tr|A0A553SSF2|A0A553SSF2_NIACILacIfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02795PE=4SV=1	tr|A0A553SSF2|A0A553SSF2_NIACILacIfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02795PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	513.811279296875	2	513.813993	1025.61343	-0.93005	-0.00047787	-3.0274	-0.0015555	-3.9575	-0.0020334	513.81235647259	44.331	0.53683	44.331	44.169	44.706	0					22	11	3	0	0	0	0.73288	1	2989	2989		35.201	2.3883	1	1027800			25036	34370	20476	20500	27858	27858					0.1016516553358997
KNHKPSVL	8	Unmodified	_KNHKPSVL_					0	0	0		ENSG00000101544|ENST00000262198|ADNP2;ADNP2|p.I1102T|1|0.57|ENSG00000101544|chr18:80138718-80138718|T/C|missense_variant	ENSG00000101544|ENST00000262198|ADNP2	ENSG00000101544|ENST00000262198|ADNP2	MULTI-SECPEP	OvCa9_classI_Rep2	2	461.8065490722656	2	461.777077	921.5396	-1.0339	-0.00047744	0.71768	0.00033141	-0.31623	-0.00014603	461.77727596794483	60.734	1.6285	57.964	57.448	59.077	-2.7702					51	30	3	0	0	0	0.028476	1	4453	4453		37.159	0	1	66186			25037	2185	20477	20501	27859	27859					0.0756919737127646
KNHLVFLVIY	10	Unmodified	_KNHLVFLVIY_					0	0	0		ENSG00000166535|ENST00000299698|A2ML1	ENSG00000166535|ENST00000299698|A2ML1	ENSG00000166535|ENST00000299698|A2ML1	MULTI-MSMS	OvCa99_classI_Rep5	1	415.9183044433594	3	415.916653	1244.72813	0.72022	0.00029955	-0.68453	-0.00028471	0.035696	1.4846E-05	415.9162900633508	64.975	0.87444	64.975	64.672	65.546	0					57	21	4	0	0	0	0.53807	1	5942	5942		49.536	5.1589	1	1726300			25038	6691	20478	20502	27860	27860					0.11555430224893826
KNIAKKLE	8	Unmodified	_KNIAKKLE_					0	0	0		tr|A0A7D7AFJ0|A0A7D7AFJ0_9CLOTProbabletRNAsulfurtransferaseOS=ClostridiumintestinaleOX=36845GN=thiIPE=3SV=1	tr|A0A7D7AFJ0|A0A7D7AFJ0_9CLOTProbabletRNAsulfurtransferaseOS=ClostridiumintestinaleOX=36845GN=thiIPE=3SV=1	tr|A0A7D7AFJ0|A0A7D7AFJ0_9CLOTProbabletRNAsulfurtransferaseOS=ClostridiumintestinaleOX=36845GN=thiIPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.80841064453125	2	472.300384	942.586216	-0.88575	-0.00041834	1.5654	0.00073932	0.67961	0.00032098	472.3008970049569	27.648	0.40018	27.648	27.491	27.891	0					17	7	4	0	0	0	0.028476	1	820	820		55.504	0	1	193460			25039	36254	20479	20503	27861	27861					0.11262637202571568
KNIDPDLD	8	Unmodified	_KNIDPDLD_					0	0	0			REV__ENSG00000124486|ENST00000378308|USP9X;REV__nc|ENSG00000114374|O00507-2|USP9Y	REV__ENSG00000124486|ENST00000378308|USP9X	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.7696228027344	2	465.232364	928.450176	-0.19373	-9.013E-05	0.92175	0.00042883	0.72802	0.0003387	465.2327679740436	35.748	0.50917	35.748	35.52	36.029	0					13	10	2	0	0	0	0.028476	1	1814	1814		21.96	0	1	28557	+		25040	18688;18184	20480	20504	27862	27862					-0.016911020987663505
KNIDTTIII	9	Unmodified	_KNIDTTIII_					0	0	0		ENSG00000165164|ENST00000378653|CFAP47;nc|ENSG00000165164|Q6ZTR5-2|CFAP47;nc|ENSG00000165164|Q6ZTR5-1|CFAP47;nc|ENSG00000165164|Q6ZTR5-6|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.8123168945312	2	515.810782	1029.60701	-0.052257	-2.6955E-05	-0.54172	-0.00027942	-0.59398	-0.00030638	515.8103852527659	56.847	1.6779	53.502	53.171	54.849	-3.3449					96	32	4	0	0	0	0.091859	1	3652	3652		99.375	3.5598	1	1285600			25041	6529	20481	20505	27863	27863					0.09339182791586609
KNIDVDIFAY	10	Unmodified	_KNIDVDIFAY_					0	0	0		tr|A0A7D7AE14|A0A7D7AE14_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_01165PE=4SV=1	tr|A0A7D7AE14|A0A7D7AE14_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_01165PE=4SV=1	tr|A0A7D7AE14|A0A7D7AE14_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_01165PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	599.3124389648438	2	599.311146	1196.60774	-0.22328	-0.00013381	1.2425	0.00074462	1.0192	0.0006108	599.3117934562655	69.545	1.6607	66.064	65.614	67.275	-3.4812					71	33	3	0	0	0	0.37918	1	5231	5231		71.296	7.7619	1	904750			25042	36245	20482	20506	27864	27864					0.017299774406183133
KNIEDEYNNK	10	Unmodified	_KNIEDEYNNK_					0	0	0			REV__ENST00000515599.1_1_5:146086275-146086944:-|nuORF	REV__ENST00000515599.1_1_5:146086275-146086944:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	423.2598571777344	3	422.870208	1265.58879	-0.35608	-0.00015058	-1.7534	-0.00074147	-2.1095	-0.00089204	422.8691738373953	40.113	0.32278	40.113	39.971	40.294	0					8	6	2	0	0	0	0.026819	1	2424	2424		35.178	12.617	1	22744	+		25043	27000	20483	20507	27865	27865					-0.03337603921113441
KNIEIYVR	8	Unmodified	_KNIEIYVR_					0	0	0			REV__tr|A0A553SH08|A0A553SH08_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_11905PE=4SV=1	REV__tr|A0A553SH08|A0A553SH08_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_11905PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.2394409179688	2	517.803291	1033.59203	-0.49928	-0.00025853	3.2353	0.0016752	2.736	0.0014167	517.8048272005227	46.99	1.2187	43.917	43.501	44.72	-3.0724					38	23	2	0	0	0	0.028476	1	2579	2579		25.45	0	1	48947	+		25044	29760	20484	20508	27866	27866					0.07657735714224145
KNIEWDEEL	9	Unmodified	_KNIEWDEEL_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.3096923828125	2	588.282586	1174.55062	-0.71213	-0.00041893	-4.2136	-0.0024788	-4.9257	-0.0028977	588.2813791226821	59.285	0.71345	59.285	58.973	59.686	0					32	18	3	0	0	0	0.027455	1	5116	5116		42.396	0	1	2598200	+		25045	16701	20485	20509	27867	27867					-0.029674898357598067
KNIFFVTNNI	10	Unmodified	_KNIFFVTNNI_					0	0	0			REV__tr|A0A7D6VQL1|A0A7D6VQL1_9CLOTDUF5050domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21585PE=4SV=1	REV__tr|A0A7D6VQL1|A0A7D6VQL1_9CLOTDUF5050domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21585PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	403.8910217285156	3	403.892396	1208.65536	1.3882	0.00056069	-3.5757	-0.0014442	-2.1874	-0.00088349	403.8909689346386	31.633	0.34756	31.633	31.46	31.807	0					21	6	4	0	0	0	0.53396	1	1314	1314		50.034	0.49747	1	720490	+		25046	31335	20486	20510	27868	27868					0.059376764314720276
KNIFFVTNNI	10	Unmodified	_KNIFFVTNNI_					0	0	0			REV__tr|A0A7D6VQL1|A0A7D6VQL1_9CLOTDUF5050domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21585PE=4SV=1	REV__tr|A0A7D6VQL1|A0A7D6VQL1_9CLOTDUF5050domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21585PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	403.892396	1208.65536	1.3882	0.00056069	-3.5757	-0.0014442	-2.1874	-0.00088349	403.8909689346386	31.633	0.34756	31.633	31.46	31.807	0	-0.18666	-0.00015148	NaN	50.034	21	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	720490	+		25047	31335	20486	20510							0.059376764314720276
KNIFFVTNNI	10	Unmodified	_KNIFFVTNNI_					0	0	0			REV__tr|A0A7D6VQL1|A0A7D6VQL1_9CLOTDUF5050domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21585PE=4SV=1	REV__tr|A0A7D6VQL1|A0A7D6VQL1_9CLOTDUF5050domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21585PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	403.892396	1208.65536	-0.28438	-0.00011486	-2.5915	-0.0010467	-2.8759	-0.0011615	403.8912092802878	34.716	0.54523	32.006	31.811	32.356	-2.7097	0.18666	0.001041	NaN	50.034	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17152	+		25048	31335	20486	20510							0.059376764314720276
KNIFRKAF	8	Unmodified	_KNIFRKAF_					0	0	0		ENST00000307968.11_1_5:131013418-131013520:-|nuORF	ENST00000307968.11_1_5:131013418-131013520:-|nuORF	ENST00000307968.11_1_5:131013418-131013520:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.2772827148438	2	512.308544	1022.60253	-0.59588	-0.00030527	2.2955	0.001176	1.6996	0.00087071	512.8108453224061	46.574	0.87758	43.501	43.136	44.014	-3.0724					19	16	2	0	0	0	0.028476	1	2419	2419		20.482	11.66	1	16244			25049	10262	20487	20511	27869	27869					0.09213763159311839
KNIGTLTTK	9	Unmodified	_KNIGTLTTK_					0	0	0			REV__tr|A0A7D6VRL4|A0A7D6VRL4_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12645PE=4SV=1	REV__tr|A0A7D6VRL4|A0A7D6VRL4_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12645PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	488.29840087890625	2	488.295299	974.576045	1.033	0.00050441	2.9978	0.0014638	4.0308	0.0019682	488.29662142573915	124.3	1.51	123.27	122.82	124.33	-1.0377					67	28	3	0	0	0	0.28934	1	9638	9638		64.207	4.089	1	248350	+		25050	31426	20488	20512	27870	27870					0.087740294773198
KNIIEIIIA	9	Unmodified	_KNIIEIIIA_					0	0	0		tr|A0A553SHP3|A0A553SHP3_NIACIReplicativeDNAhelicaseOS=NialliacirculansOX=1397GN=dnaBPE=3SV=1	tr|A0A553SHP3|A0A553SHP3_NIACIReplicativeDNAhelicaseOS=NialliacirculansOX=1397GN=dnaBPE=3SV=1	tr|A0A553SHP3|A0A553SHP3_NIACIReplicativeDNAhelicaseOS=NialliacirculansOX=1397GN=dnaBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	514.7970581054688	2	513.831517	1025.64848	-0.24514	-0.00012596	-3.4917	-0.0017941	-3.7368	-0.0019201	513.83180684386	117.84	0.44511	116.81	116.59	117.03	-1.0324					12	8	2	0	0	0	0.027462	1	8887	8887		19.997	5.1319	1	9843.9			25051	33294	20489	20513	27871	27871					0.13668363550914364
KNIINNLIL	9	Unmodified	_KNIINNLIL_					0	0	0			REV__ENSG00000184445|ENST00000333479|KNTC1	REV__ENSG00000184445|ENST00000333479|KNTC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.833251953125	2	527.834591	1053.65463	-0.87506	-0.00046189	0.055739	2.9421E-05	-0.81932	-0.00043247	527.8347953558856	105.6	1.5727	103.58	103.25	104.82	-2.0161					56	30	3	0	0	0	0.38529	1	9592	9592		53.351	5.6941	1	303840	+		25052	22428	20490	20514	27872	27872					0.12994881782424272
KNIKIKRAL	9	Unmodified	_KNIKIKRAL_					0	0	0			REV__ENSG00000174718|ENST00000312561|RESF1	REV__ENSG00000174718|ENST00000312561|RESF1	MULTI-MSMS	OvCa9_classI_Rep2	2	542.3718872070312	2	542.371675	1082.7288	0.093673	5.0806E-05	-0.44981	-0.00024396	-0.35614	-0.00019316	542.3713013214245	41.12	2.1196	38.411	38.093	40.213	-2.7097					118	42	4	0	0	0	0.46377	1	2112	2112		45.952	7.1458	1	313610	+		25053	21848	20491	20515	27873	27873					0.19074269664588428
KNIKLDYIYRF	11	Unmodified	_KNIKLDYIYRF_					0	0	0		tr|A0A7D6ZWM6|A0A7D6ZWM6_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_18540PE=4SV=1	tr|A0A7D6ZWM6|A0A7D6ZWM6_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_18540PE=4SV=1	tr|A0A7D6ZWM6|A0A7D6ZWM6_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_18540PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.7650451660156	3	491.613522	1471.81874	2.6142	0.0012852	-0.95892	-0.00047142	1.6553	0.00081375	491.61303183584613	100.83	1.2054	100.83	100.53	101.73	0					85	28	5	0	0	0	0.026277	1	11309	11309		17.833	4.8757	1	13681000			25054	35847	20492	20516	27874	27874					0.10169854482478513
KNIKRFLPA	9	Unmodified	_KNIKRFLPA_					0	0	0		tr|A0A553SU06|A0A553SU06_NIACICarotenoidbiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_06075PE=4SV=1	tr|A0A553SU06|A0A553SU06_NIACICarotenoidbiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_06075PE=4SV=1	tr|A0A553SU06|A0A553SU06_NIACICarotenoidbiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_06075PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.8331909179688	2	543.842751	1085.67095	0.91282	0.00049643	-1.8371	-0.00099908	-0.92425	-0.00050265	543.8414586924639	74.508	0.51436	74.508	74.366	74.88	0					23	12	2	0	0	0	0.027462	1	7385	7385		23.042	0	1	815860			25055	34559	20493	20517	27875	27875					0.13154007739171902
KNILREFV	8	Unmodified	_KNILREFV_					0	0	0		ENSG00000110395|ENST00000264033|CBL	ENSG00000110395|ENST00000264033|CBL	ENSG00000110395|ENST00000264033|CBL	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8033447265625	2	509.805834	1017.59712	-0.41042	-0.00020923	-3.6368	-0.0018541	-4.0473	-0.0020633	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.75241	1	13658	13658		25.45	1.2474	1	150140			25056	2771	20494	20518	27876	27876					0.08902039576844345
KNILTTPD	8	Unmodified	_KNILTTPD_					0	0	0		tr|A0A7D6VS53|A0A7D6VS53_9CLOTDUF1576domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04380PE=4SV=1	tr|A0A7D6VS53|A0A7D6VS53_9CLOTDUF1576domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04380PE=4SV=1	tr|A0A7D6VS53|A0A7D6VS53_9CLOTDUF1576domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04380PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.26739501953125	2	451.2531	900.491647	-0.3579	-0.0001615	1.0462	0.00047209	0.68828	0.00031059	451.2535872497759	71.888	1.1153	68.432	68.174	69.289	-3.4563					37	22	3	0	0	0	0.028476	1	5536	5536		40.573	4.9543	1	71737			25057	34988	20495	20519	27877	27877					0.037420786605480316
KNINIKIPK	9	Unmodified	_KNINIKIPK_					0	0	0		tr|A0A7D6VS94|A0A7D6VS94_9CLOTPeptidasedomain-containingABCtransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_22100PE=4SV=1	tr|A0A7D6VS94|A0A7D6VS94_9CLOTPeptidasedomain-containingABCtransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_22100PE=4SV=1	tr|A0A7D6VS94|A0A7D6VS94_9CLOTPeptidasedomain-containingABCtransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_22100PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	534.8251953125	2	534.350409	1066.68626	0.1823	9.741E-05	-2.5682	-0.0013723	-2.3859	-0.0012749	534.3495926487232	88.011	1.8438	85.88	85.493	87.337	-2.1309					70	36	4	0	0	0	0.027462	1	5474	5474		26.693	5.746	1	251540			25058	35000	20496	20520	27878	27878					0.1555887453635023
KNINIVRK	8	Unmodified	_KNINIVRK_					0	0	0		ENSG00000100412|ENST00000216254|ACO2	ENSG00000100412|ENST00000216254|ACO2	ENSG00000100412|ENST00000216254|ACO2	MULTI-MSMS	OvCa9_classI_Rep2	2	492.8201904296875	2	492.819276	983.623999	-1.0524	-0.00051866	0.60887	0.00030006	-0.44358	-0.0002186	492.81937696825383	61.985	2.6287	59.225	58.882	61.511	-2.7593					139	50	4	0	0	0	0.75241	1	4680	4680		25.45	1.2474	1	798600			25059	2064	20497	20521	27879	27879					0.13153148188030173
KNINLIIIL	9	Unmodified	_KNINLIIIL_					0	0	0		ENSG00000137507|ENST00000260061|LRRC32	ENSG00000137507|ENST00000260061|LRRC32	ENSG00000137507|ENST00000260061|LRRC32	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.3576049804688	2	527.35516	1052.69577	0.64821	0.00034183	-0.077186	-4.0705E-05	0.57102	0.00030113	527.3550440559598	85.182	2.5141	82.536	82.215	84.729	-2.6463					145	50	5	0	0	0	0.064607	2	7178	7178;7214		110.34	9.7675	1	2786200			25060	4594	20498	20522	27880;27881	27880					0.17152642821906738
KNINLPEIP	9	Unmodified	_KNINLPEIP_					0	0	0		ENSG00000157823|ENST00000336418|AP3S2;nc|ENSG00000242498|Q7Z6K5-2|ARPIN	ENSG00000157823|ENST00000336418|AP3S2	ENSG00000157823|ENST00000336418|AP3S2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.2992553710938	2	519.303124	1036.5917	-1.1395	-0.00059172	0.78955	0.00041002	-0.34991	-0.00018171	519.3034311915719	71.176	1.4084	67.72	67.393	68.802	-3.4563					47	28	2	0	0	0	0.027462	1	5518	5518		30.504	13.139	1	645750			25061	5912	20499	20523	27882	27882					0.07486315994378856
KNINQIGEIL	10	Unmodified	_KNINQIGEIL_					0	0	0			REV__tr|A0A7D6ZPT5|A0A7D6ZPT5_9CLOTPhosphopentomutaseOS=ClostridiumintestinaleOX=36845GN=deoBPE=3SV=1	REV__tr|A0A7D6ZPT5|A0A7D6ZPT5_9CLOTPhosphopentomutaseOS=ClostridiumintestinaleOX=36845GN=deoBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	571.331787109375	2	571.332413	1140.65027	-0.80515	-0.00046001	0.77941	0.0004453	-0.025739	-1.4706E-05	571.3325786177619	117.75	1.3144	116.4	116.1	117.42	-1.3444					78	24	6	0	0	0	0.45822	1	11015	11015		60.118	7.1816	1	282390	+		25062	32141	20500	20524	27883	27883					0.08557372568861865
KNIPKDVT	8	Unmodified	_KNIPKDVT_					0	0	0			REV__tr|A0A7D7A523|A0A7D7A523_9CLOTPseudouridinesynthaseOS=ClostridiumintestinaleOX=36845GN=rluFPE=3SV=1	REV__tr|A0A7D7A523|A0A7D7A523_9CLOTPseudouridinesynthaseOS=ClostridiumintestinaleOX=36845GN=rluFPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	458.5899658203125	2	457.768917	913.523281	-0.34074	-0.00015598	-0.17681	-8.094E-05	-0.51755	-0.00023692	457.76888894199584	53.479	0.8456	50.665	50.379	51.225	-2.8139					20	16	2	0	0	0	0.028476	1	3685	3685		15.642	0	1	19537	+		25063	32624	20501	20525	27884	27884					0.06306071414508096
KNIPLKRVV	9	Unmodified	_KNIPLKRVV_					0	0	0		tr|A0A7D6W283|A0A7D6W283_9CLOTPhosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_05505PE=3SV=1	tr|A0A7D6W283|A0A7D6W283_9CLOTPhosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_05505PE=3SV=1	tr|A0A7D6W283|A0A7D6W283_9CLOTPhosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_05505PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.2777709960938	2	533.858401	1065.70225	1.0565	0.00056401	1.0277	0.00054863	2.0841	0.0011126	533.8586926151978	83.344	0.59302	83.344	83.078	83.671	0					32	13	3	0	0	0	0.027462	1	8628	8628		11.511	4.7755	1	1022100			25064	35422	20502	20526	27885	27885					0.17202580773277987
KNIPWYISE	9	Unmodified	_KNIPWYISE_					0	0	0		tr|A0A7D6ZQP3|A0A7D6ZQP3_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01160PE=3SV=1	tr|A0A7D6ZQP3|A0A7D6ZQP3_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01160PE=3SV=1	tr|A0A7D6ZQP3|A0A7D6ZQP3_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01160PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.8330688476562	2	575.300581	1148.58661	-1.7196	-0.00098929	-1.8064	-0.0010392	-3.526	-0.0020285	575.8016659293701	84.529	1.0637	82.268	81.881	82.945	-2.261					31	21	2	0	0	0	0.027462	1	4928	4928		21.96	0	1	43022			25065	35704	20503	20527	27886	27886					0.018260121317325684
KNIRIKKRMV	10	Unmodified	_KNIRIKKRMV_					0	0	0			REV__tr|A0A7D7ADL5|A0A7D7ADL5_9CLOTEndonucleaseMutS2OS=ClostridiumintestinaleOX=36845GN=HZF06_23300PE=4SV=1	REV__tr|A0A7D7ADL5|A0A7D7ADL5_9CLOTEndonucleaseMutS2OS=ClostridiumintestinaleOX=36845GN=HZF06_23300PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	643.844482421875	2	643.416091	1284.81763	1.4791	0.00095165	-4.2249	-0.0027184	-2.7459	-0.0017667	643.4127789271414	144.34	0.53986	144.34	144.01	144.55	0					18	10	3	0	0	0	0.027147	1	16892	16892		21.96	4.4919	1	151910	+		25066	32696	20504	20528	27887	27887					0.1866136163257579
KNIRYVALT	9	Unmodified	_KNIRYVALT_					0	0	0		ENST00000565642.5_1_16:71777395-71799448:-|nuORF;AP1G1|p.N739Kfs*28|1|0.05|ENSG00000166747|chr16:71738993-71738994|-/C|frameshift_variant;ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.8186645507812	2	539.324391	1076.63423	0.22171	0.00011957	-0.80724	-0.00043536	-0.58553	-0.00031579	539.3240620950626	62.952	0.59632	62.952	62.661	63.257	0					21	14	2	0	0	0	0.027462	1	5611	5611		19.104	0.84144	1	543770			25067	98	20505	20529	27888	27888					0.09897711122584951
KNITQFHLSK	10	Unmodified	_KNITQFHLSK_					0	0	0		tr|A0A7D6ZV68|A0A7D6ZV68_9CLOTBglGfamilytranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02720PE=4SV=1	tr|A0A7D6ZV68|A0A7D6ZV68_9CLOTBglGfamilytranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02720PE=4SV=1	tr|A0A7D6ZV68|A0A7D6ZV68_9CLOTBglGfamilytranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02720PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	406.2436828613281	3	405.899662	1214.67716	1.7534	0.0007117	-2.6488	-0.0010752	-0.89546	-0.00036347	405.8984152262133	82.27	0.88667	80.622	80.231	81.117	-1.6485					25	16	2	0	0	0	0.027142	1	6985	6985		20.837	0	1	28344			25068	35793	20506	20530	27889	27889					0.07840481180028291
KNITQRGNV	9	Unmodified	_KNITQRGNV_					0	0	0		ENSG00000151778|ENST00000379179|SERP2;ENSG00000120742|ENST00000239944|SERP1	ENSG00000151778|ENST00000379179|SERP2	ENSG00000151778|ENST00000379179|SERP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.799560546875	2	515.293622	1028.57269	-0.70916	-0.00036543	-3.6188	-0.0018648	-4.328	-0.0022302	515.2916595586944	61.722	1.4211	61.722	61.2	62.621	0					87	33	5	0	0	0	0.027462	1	5420	5420		40.778	0	1	14549000			25069	3450	20507	20531	27890	27890					0.05954779423313994
KNITVPLKL	9	Unmodified	_KNITVPLKL_					0	0	0			REV__ENSG00000196961|ENST00000354293|AP2A1	REV__ENSG00000196961|ENST00000354293|AP2A1	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.8163452148438	2	513.33951	1024.66447	-0.36071	-0.00018516	-0.017064	-8.7595E-06	-0.37777	-0.00019392	513.3393824713853	75.668	1.3924	73.257	72.969	74.361	-2.4106					49	26	3	0	0	0	0.027462	1	3825	3825		34.173	2.6427	1	168560	+		25070	22880	20508	20532	27891	27891					0.15312069787796645
KNIVKKVNE	9	Unmodified	_KNIVKKVNE_					0	0	0			REV__tr|A0A553SJ69|A0A553SJ69_NIACIGlycerolkinaseOS=NialliacirculansOX=1397GN=glpKPE=3SV=1	REV__tr|A0A553SJ69|A0A553SJ69_NIACIGlycerolkinaseOS=NialliacirculansOX=1397GN=glpKPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.82861328125	2	536.329673	1070.64479	-0.80465	-0.00043156	-0.59454	-0.00031887	-1.3992	-0.00075043	536.3292112372454	66.115	0.46777	66.115	65.945	66.412	0					14	11	2	0	0	0	0.027455	1	6155	6155		42.396	13.247	1	1618900	+		25071	29971	20509	20533	27892	27892					0.11229693777045213
KNIYGVGW	8	Unmodified	_KNIYGVGW_					0	0	0			REV__tr|A0A7D6VMN9|A0A7D6VMN9_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12515PE=4SV=1	REV__tr|A0A7D6VMN9|A0A7D6VMN9_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12515PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	469.26922607421875	2	468.750527	935.486502	-0.77297	-0.00036233	-1.5485	-0.00072585	-2.3215	-0.0010882	468.7504845938982	49.79	0.26446	49.79	49.679	49.944	0					7	5	2	0	0	0	0.028476	1	3738	3738		35.201	19.559	1	70548	+		25072	31141	20510	20534	27893	27893					0.016178195886254798
KNKADKLAN	9	Unmodified	_KNKADKLAN_					0	0	0			REV__ENSG00000167768|ENST00000252244|KRT1	REV__ENSG00000167768|ENST00000252244|KRT1	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2907409667969	2	501.290548	1000.56654	-1.4695	-0.00073667	1.3149	0.00065914	-0.15466	-7.7529E-05	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.69403	1	11049	11049		19.997	0.6368	1	97838	+	+	25073	16188	20511	20535	27894	27894					0.06628261191792717
KNKALVNAGAK	11	Unmodified	_KNKALVNAGAK_					0	0	0			REV__ENST00000518253.5_1_6:90312741-90340720:+|nuORF	REV__ENST00000518253.5_1_6:90312741-90340720:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.3760986328125	2	557.340572	1112.66659	0.37426	0.00020859	-0.56364	-0.00031414	-0.18938	-0.00010555	557.3400594518198	31.587	0.59515	31.587	31.311	31.906	0					21	11	2	0	0	0	0.02557	1	1344	1344		39.253	16.673	1	142430	+		25074	19270	20512	20536	27895	27895					0.114764985255988
KNKDIDIKPF	10	Unmodified	_KNKDIDIKPF_					0	0	0			REV__tr|A0A7D7ABT9|A0A7D7ABT9_9CLOTComEC/Rec2familycompetenceproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16570PE=4SV=1	REV__tr|A0A7D7ABT9|A0A7D7ABT9_9CLOTComEC/Rec2familycompetenceproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16570PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	406.21575927734375	3	406.567801	1216.68157	0.10396	4.2267E-05	2.9659	0.0012058	3.0699	0.0012481	406.56908506031874	61.259	0.68211	58.5	58.147	58.829	-2.7593					19	12	2	0	0	0	0.027142	1	4525	4525		27.047	1.9213	1	15385	+		25075	32679	20513	20537	27896	27896					0.08189945602930493
KNKDIKTVSG	10	Unmodified	_KNKDIKTVSG_					0	0	0			REV__ENST00000427362.2_1_X:17755712-17763601:+|nuORF	REV__ENST00000427362.2_1_X:17755712-17763601:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3176879882812	2	545.316763	1088.61897	-1.9768	-0.001078	1.7183	0.00093701	-0.25853	-0.00014098	545.3174971514211	139.12	3.9663	138.06	135.98	139.95	-1.0595					186	80	3	0	0	0	0.70152	1	11337	11337		30.318	1.1682	1	94142	+		25076	25679	20514	20538	27897	27897					0.07820799534761136
KNKDKDFDV	9	Unmodified	_KNKDKDFDV_					0	0	0			REV__tr|A0A7D6VX20|A0A7D6VX20_9CLOTAcetatekinaseOS=ClostridiumintestinaleOX=36845GN=ackAPE=3SV=1	REV__tr|A0A7D6VX20|A0A7D6VX20_9CLOTAcetatekinaseOS=ClostridiumintestinaleOX=36845GN=ackAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	554.8278198242188	2	554.785296	1107.55604	1.2257	0.00067999	-0.32685	-0.00018133	0.89884	0.00049866	554.785200065986	65.066	0.77438	62.342	61.917	62.691	-2.7246					23	14	2	0	0	0	0.027462	1	4968	4968		21.96	0	1	26682	+		25077	31762	20515	20539	27898	27898					0.006562337466903045
KNKDVKNPE	9	Unmodified	_KNKDVKNPE_					0	0	0		ENST00000555711.5_1_12:25357018-25357243:+|nuORF;ENSG00000205707|ENST00000381356|ETFRF1	ENST00000555711.5_1_12:25357018-25357243:+|nuORF	ENST00000555711.5_1_12:25357018-25357243:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.2802734375	2	536.293288	1070.57202	1.9584	0.0010503	2.9374	0.0015753	4.8958	0.0026256	536.797461939025	81.959	0.28699	81.959	81.854	82.141	0					11	6	2	0	0	0	0.027455	1	8482	8482		26.693	0	1	149780			25078	9082	20516	20540	27899	27899					0.039559399836207376
KNKEIKIEP	9	Unmodified	_KNKEIKIEP_					0	0	0		EZH1|p.A344Efs*38|1|0.18|ENSG00000108799|chr17:42713381-42713382|TG/-|frameshift_variant;ENST00000586103.5_1_17:40855746-40880959:-|nuORF;nc|ENSG00000108799|Q92800-3|EZH1;ENSG00000108799|ENST00000428826|EZH1;nc|ENSG00000108799|Q92800-2|EZH1;ENST00000591330.5_1_17:40855746-40879722:-|nuORF;nc|ENSG00000108799|Q92800-5|EZH1;ENST00000585912.5_1_17:40855746-40880959:-|nuORF;nc|ENSG00000108799|Q92800-4|EZH1	EZH1|p.A344Efs*38|1|0.18|ENSG00000108799|chr17:42713381-42713382|TG/-|frameshift_variant	EZH1|p.A344Efs*38|1|0.18|ENSG00000108799|chr17:42713381-42713382|TG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	549.830078125	2	549.829506	1097.64446	-1.4364	-0.00078979	0.25665	0.00014112	-1.1798	-0.00064867	549.8296566613044	82.508	4.9298	80.211	79.735	84.665	-2.2963					199	100	5	0	0	0	0.047062	2	4713	4713;4731		120.62	13.613	1	6178900			25079	2676	20517	20541	27900;27901	27900					0.09954274057167822
KNKEIKIEP	9	Unmodified	_KNKEIKIEP_					0	0	0		EZH1|p.A344Efs*38|1|0.18|ENSG00000108799|chr17:42713381-42713382|TG/-|frameshift_variant;ENST00000586103.5_1_17:40855746-40880959:-|nuORF;nc|ENSG00000108799|Q92800-3|EZH1;ENSG00000108799|ENST00000428826|EZH1;nc|ENSG00000108799|Q92800-2|EZH1;ENST00000591330.5_1_17:40855746-40879722:-|nuORF;nc|ENSG00000108799|Q92800-5|EZH1;ENST00000585912.5_1_17:40855746-40880959:-|nuORF;nc|ENSG00000108799|Q92800-4|EZH1	EZH1|p.A344Efs*38|1|0.18|ENSG00000108799|chr17:42713381-42713382|TG/-|frameshift_variant	EZH1|p.A344Efs*38|1|0.18|ENSG00000108799|chr17:42713381-42713382|TG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.8309936523438	2	549.829506	1097.64446	-0.33948	-0.00018666	-0.54041	-0.00029713	-0.8799	-0.00048379	549.8292171061989	83.08	2.9395	80.397	79.733	82.673	-2.6829					155	60	5	0	0	0	0.0094524	1	6938	6938		171.38	26.229	1	5921500			25080	2676	20517	20541	27902	27902					0.09954274057167822
KNKFHVKII	9	Unmodified	_KNKFHVKII_					0	0	0			REV__ENSG00000198734|ENST00000367797|F5	REV__ENSG00000198734|ENST00000367797|F5	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.33837890625	2	563.858401	1125.70225	2.7756	0.001565	-4.4832	-0.0025279	-1.7076	-0.00096283	563.8556622767458	88.941	0.39316	88.941	88.76	89.153	0					15	9	2	0	0	0	0.027462	1	9473	9473		23.042	0	1	409700	+	+	25081	23055	20518	20542	27903	27903					0.14442580773265945
KNKFKNAGTE	10	Unmodified	_KNKFKNAGTE_					0	0	0			REV__L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|155|3|sense	REV__L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|155|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.8956298828125	2	568.806562	1135.59857	-0.419	-0.00023833	0.71808	0.00040845	0.29908	0.00017012	568.8064875601642	35.317	0.61058	35.317	34.864	35.475	0					20	12	2	0	0	0	0.026681	1	1792	1792		36.447	0	1	98362	+		25082	28530	20519	20543	27904	27904					0.03619628874935188
KNKFKNEDL	9	Unmodified	_KNKFKNEDL_					0	0	0		nc|ENSG00000112742|P33981-2|TTK;chr6:80022472-80026381|411|14.54|0.51|4.83|+|ENST00000509894|TTK,TTK;ENSG00000112742|ENST00000369798|TTK;TTK|p.K344Efs*3|1|0.22|ENSG00000112742|chr6:80014506-80014507|AA/-|frameshift_variant	nc|ENSG00000112742|P33981-2|TTK	nc|ENSG00000112742|P33981-2|TTK	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.8473510742188	2	568.308938	1134.60332	0.12355	7.0214E-05	-0.18038	-0.00010251	-0.056832	-3.2298E-05	568.3088554510151	71.82	0.44668	69.217	68.882	69.328	-2.6023					14	8	2	0	0	0	0.027462	1	3365	3365		20.947	0	1	134690			25083	520	20520	20544	27905	27905					0.04140513017705416
KNKFLKNN	8	Unmodified	_KNKFLKNN_					0	0	0			REV__tr|A0A7D7AEN9|A0A7D7AEN9_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03190PE=4SV=1	REV__tr|A0A7D7AEN9|A0A7D7AEN9_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03190PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.8296203613281	2	503.295633	1004.57671	1.3824	0.00069575	2.9226	0.0014709	4.305	0.0021667	503.29699157051687	93.611	0.45445	93.611	93.386	93.841	0					12	10	2	0	0	0	0.028476	1	10134	10134		47.916	7.343	1	289480	+		25084	32706	20521	20545	27906	27906					0.07460868917030439
KNKFSSIIGI	10	Unmodified	_KNKFSSIIGI_					0	0	0			REV__tr|A0A7D6VP68|A0A7D6VP68_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_21885PE=3SV=1	REV__tr|A0A7D6VP68|A0A7D6VP68_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_21885PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8297119140625	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.6104	1	14290	14290		40.778	7.2626	1	245610	+		25085	31233	20522	20546	27907	27907					0.10094577919812764
KNKFSSIIGI	10	Unmodified	_KNKFSSIIGI_					0	0	0			REV__tr|A0A7D6VP68|A0A7D6VP68_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_21885PE=3SV=1	REV__tr|A0A7D6VP68|A0A7D6VP68_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_21885PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	553.83056640625	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.49558	2	11988	11969;11988		54.776	21.964	1	308210	+		25086	31233	20522	20546	27908;27909	27909					0.10094577919812764
KNKGKKKKP	9	Unmodified	_KNKGKKKKP_					0	0	0		ENST00000399586.2_1_X:74960734-74966719:-|nuORF	ENST00000399586.2_1_X:74960734-74966719:-|nuORF	ENST00000399586.2_1_X:74960734-74966719:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.3333740234375	2	528.356025	1054.6975	-0.90641	-0.00047891	0.56684	0.0002995	-0.33957	-0.00017941	528.3561883966727	58.214	1.1052	54.869	54.596	55.702	-3.3449					51	21	3	0	0	0	0.027462	1	3812	3812		6.7355	0	1	125820			25087	11394	20523	20547	27910	27910					0.17233696630501072
KNKGPLSLD	9	Unmodified	_KNKGPLSLD_					0	0	0			REV__ENSG00000179409|ENST00000319004|GEMIN4	REV__ENSG00000179409|ENST00000319004|GEMIN4	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.2772521972656	2	486.279649	970.544745	-0.57568	-0.00027994	0.44154	0.00021471	-0.13414	-6.5229E-05	486.2798125909863	51.707	0.70942	51.707	51.504	52.214	0					39	16	4	0	0	0	0.027426	1	3980	3980		56.721	10.769	1	1218200	+		25088	22123	20524	20548	27911	27911					0.05829456443234449
KNKKESLLF	9	Unmodified	_KNKKESLLF_					0	0	0			REV__nc|ENSG00000156970|O60566-2|BUB1B	REV__nc|ENSG00000156970|O60566-2|BUB1B	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8303833007812	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.61208	1	11863	11863		30.504	1.3541	1	308210	+		25089	20507	20525	20549	27912	27912					0.10094577919812764
KNKKGWQNS	9	Unmodified	_KNKKGWQNS_					0	0	0		ENSG00000183770|ENST00000648323|FOXL2	ENSG00000183770|ENST00000648323|FOXL2	ENSG00000183770|ENST00000648323|FOXL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.7913208007812	2	545.293622	1088.57269	-1.4033	-0.00076522	-0.42939	-0.00023414	-1.8327	-0.00099937	545.2930132981413	54.715	0.66559	51.468	50.979	51.644	-3.2474					34	12	4	0	0	0	0.027462	1	3357	3357		35.618	1.4457	1	166330			25090	8105	20526	20550	27913	27913					0.031947794233246896
KNKKGWQNS	9	Unmodified	_KNKKGWQNS_					0	0	0		ENSG00000183770|ENST00000648323|FOXL2	ENSG00000183770|ENST00000648323|FOXL2	ENSG00000183770|ENST00000648323|FOXL2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	545.293622	1088.57269	-1.2943	-0.00070575	-1.2207	-0.00066564	-2.515	-0.0013714	545.2928313208515	54.545	0.34807	51.731	51.424	51.772	-2.8139	0.13161	-0.00047579	NaN	27.882	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27168			25091	8105	20526	20550							0.031947794233246896
KNKKHVLF	8	Unmodified	_KNKKHVLF_					0	0	0			REV__ENSG00000156299|ENST00000541036|TIAM1	REV__ENSG00000156299|ENST00000541036|TIAM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.762451171875	2	507.316369	1012.61818	-0.39169	-0.00019871	-3.7284	-0.0018915	-4.1201	-0.0020902	507.3145354594799	50.877	0.48468	50.877	50.551	51.036	0					13	10	2	0	0	0	0.028476	1	3899	3899		9.4706	0	1	213610	+		25092	20472	20527	20551	27914	27914					0.1123804967637625
KNKKISIDI	9	Unmodified	_KNKKISIDI_					0	0	0		tr|A0A7D7A1Z8|A0A7D7A1Z8_9CLOTStageIIsporulationproteinMOS=ClostridiumintestinaleOX=36845GN=spoIIMPE=4SV=1	tr|A0A7D7A1Z8|A0A7D7A1Z8_9CLOTStageIIsporulationproteinMOS=ClostridiumintestinaleOX=36845GN=spoIIMPE=4SV=1	tr|A0A7D7A1Z8|A0A7D7A1Z8_9CLOTStageIIsporulationproteinMOS=ClostridiumintestinaleOX=36845GN=spoIIMPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.7953491210938	2	529.832049	1057.64954	-1.8121	-0.00096013	-3.6206	-0.0019183	-5.4327	-0.0028784	530.329836809604	54.678	0.51232	51.43	51.183	51.695	-3.2474					16	9	2	0	0	0	0.027462	1	3419	3419		15.642	0	1	17757			25093	36055	20528	20552	27915	27915					0.12302577919808755
KNKLAYVMP	9	Unmodified	_KNKLAYVMP_					0	0	0			REV__ENSG00000181017|ENST00000641377|OR56B2P	REV__ENSG00000181017|ENST00000641377|OR56B2P	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.28076171875	2	532.30207	1062.58959	2.0503	0.0010914	-3.2149	-0.0017113	-1.1646	-0.00061991	532.2998231503232	85.47	0.74313	85.47	85.169	85.912	0					35	17	3	0	0	0	0.027462	1	8966	8966		31.955	0	1	499330	+		25094	22213	20529	20553	27916	27916					0.06079563984917513
KNKLHLSK	8	Unmodified	_KNKLHLSK_					0	0	0			REV__ENST00000491500.5_1_3:114412403-114519997:-|nuORF	REV__ENST00000491500.5_1_3:114412403-114519997:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.2645568847656	2	484.306001	966.597449	-0.76117	-0.00036864	0.26655	0.00012909	-0.49462	-0.00023955	484.30595155815917	55.627	1.4207	52.333	51.7	53.12	-3.2944					46	27	3	0	0	0	0.028476	1	3556	3556		10.866	0	1	97212	+		25095	26676	20530	20554	27917	27917					0.11281459296719731
KNKLIYTLQ	9	Unmodified	_KNKLIYTLQ_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.V2563Sfs*5|1|0.19|ENSG00000083857|chr4:186618896-186618899|TCAC/-|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.8438720703125	2	560.839874	1119.66519	4.6309	0.0025972	4.2854	0.0024034	8.9163	0.0050006	560.8421293783612	133.51	0.78203	131.99	131.66	132.44	-1.5257					45	15	4	0	0	0	0.51865	1	12873	12873		40.778	1.5253	1	66862			25096	1705	20531	20555	27918	27918					0.11014864436833705
KNKLIYTLQ	9	Unmodified	_KNKLIYTLQ_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.V2563Sfs*5|1|0.19|ENSG00000083857|chr4:186618896-186618899|TCAC/-|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	560.839874	1119.66519	0.96385	0.00054056	7.8313	0.0043921	8.7951	0.0049326	560.8441122625759	131.9	0.681	131.67	131.45	132.13	-0.22696	-0.21429	0.0012056	NaN	40.778	34	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31814			25097	1705	20531	20555							0.11014864436833705
KNKLIYTLQ	9	Unmodified	_KNKLIYTLQ_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.V2563Sfs*5|1|0.19|ENSG00000083857|chr4:186618896-186618899|TCAC/-|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	560.839874	1119.66519	-0.62888	-0.0003527	9.5083	0.0053326	8.8794	0.0049799	560.845279018048	133.13	0.68494	132	131.78	132.47	-1.1249	0.11528	0.0030867	NaN	40.778	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29097			25098	1705	20531	20555							0.11014864436833705
KNKLNINIV	9	Unmodified	_KNKLNINIV_					0	0	0			REV__nc|ENSG00000148834|P78417-2|GSTO1	REV__nc|ENSG00000148834|P78417-2|GSTO1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3285522460938	2	528.332216	1054.64988	1.3906	0.00073468	1.0669	0.00056366	2.4574	0.0012983	528.332690872167	93.255	0.78819	93.255	93.011	93.799	0					52	18	4	0	0	0	0.027462	1	10090	10090		16.473	0	1	4988900	+		25099	20129	20532	20556	27919	27919					0.12473997639631307
KNKLRQTE	8	Unmodified	_KNKLRQTE_					0	0	0		ENSG00000100629|ENST00000555265|CEP128;nc|ENSG00000100629|Q6ZU80-3|CEP128;nc|ENSG00000100629|Q6ZU80-1|CEP128	ENSG00000100629|ENST00000555265|CEP128	ENSG00000100629|ENST00000555265|CEP128	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.2670593261719	2	508.795998	1015.57744	-0.68971	-0.00035092	0.39379	0.00020036	-0.29592	-0.00015057	508.7960891915559	49.489	0.65821	49.489	49.33	49.988	0					12	7	2	0	0	0	0.028476	1	3734	3734		19.104	0	1	476960			25100	2093	20533	20557	27920	27920					0.07027663566077536
KNKLSKAII	9	Unmodified	_KNKLSKAII_					0	0	0			REV__ENSG00000165029|ENST00000374736|ABCA1	REV__ENSG00000165029|ENST00000374736|ABCA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.30535888671875	2	507.837134	1013.65972	2.774	0.0014087	-0.84005	-0.00042661	1.9339	0.00098213	507.8366043320962	89.401	0.77232	89.401	89.119	89.891	0					44	18	3	0	0	0	0.027411	1	9610	9610		37.812	9.9293	1	2298400	+		25101	21049	20534	20558	27921	27921					0.153431856450311
KNKLVYCN	8	Carbamidomethyl (C)	_KNKLVYC(Carbamidomethyl (C))N_	KNKLVYC(1)N		KNKLVYC(60)N		0	1	0			REV__nc|ENSG00000140563|Q6DN12-4|MCTP2	REV__nc|ENSG00000140563|Q6DN12-4|MCTP2	MULTI-MSMS	OvCa9_classI_Rep3	3	519.7741088867188	2	519.773677	1037.5328	1.0842	0.00056353	-0.45258	-0.00023524	0.63159	0.00032829	519.7733182741239	128.34	2.792	127.25	126.36	129.15	-1.0933					96	55	4	0	0	0	0.61758	1	10117	10117		60.294	12.637	1	251840	+		25102	19686	20535	20559	27922	27922	216				0.015535164283846825
KNKLYKVID	9	Unmodified	_KNKLYKVID_					0	0	0			REV__tr|A0A553SNJ9|A0A553SNJ9_NIACIATPsynthaseF0subunit8OS=NialliacirculansOX=1397GN=CEQ21_24500PE=4SV=1	REV__tr|A0A553SNJ9|A0A553SNJ9_NIACIATPsynthaseF0subunit8OS=NialliacirculansOX=1397GN=CEQ21_24500PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	561.7979736328125	2	560.839874	1119.66519	0.14099	7.9075E-05	-0.90166	-0.00050569	-0.76067	-0.00042661	560.839411168167	83.568	0.43011	81.969	81.64	82.07	-1.5988					14	8	2	0	0	0	0.027093	1	7169	7169		96.19	21.147	1	14771	+		25103	30428	20536	20560	27923	27923					0.11014864436833705
KNKLYKVID	9	Unmodified	_KNKLYKVID_					0	0	0			REV__tr|A0A553SNJ9|A0A553SNJ9_NIACIATPsynthaseF0subunit8OS=NialliacirculansOX=1397GN=CEQ21_24500PE=4SV=1	REV__tr|A0A553SNJ9|A0A553SNJ9_NIACIATPsynthaseF0subunit8OS=NialliacirculansOX=1397GN=CEQ21_24500PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	560.839874	1119.66519	-1.39	-0.00077957	-0.40444	-0.00022683	-1.7944	-0.0010064	560.8394157187961	84.612	0.54185	82.351	82.162	82.704	-2.261	0.1909	0.00016944	NaN	96.19	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18239	+		25104	30428	20536	20560							0.11014864436833705
KNKNFKCHRTY	11	Unmodified	_KNKNFKCHRTY_					0	0	0		ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10;ENST00000548656.2_1_14:19411434-19411701:-|nuORF;FGFR2-USP10|1|fusion	ENSG00000103194|ENST00000219473|USP10;FGFR2-USP10|1|fusion	ENSG00000103194|ENST00000219473|USP10	MULTI-SECPEP	OvCa9_classI_Rep3	3	480.2744140625	3	480.250589	1437.72994	-0.37419	-0.0001797	-0.0057559	-2.7643E-06	-0.37994	-0.00018247	480.2504162545315	94.518	0.95514	92.623	92.255	93.211	-1.8956					42	18	4	0	0	0	0.02625	1	6176	6176		9.2118	0	1	47928			25105	2292;14330	20537	20561	27924	27924					0.02858115971184816
KNKPFGPFL	9	Unmodified	_KNKPFGPFL_					0	0	0		ENST00000607810.5_2_6:19803822-19804023:-|nuORF	ENST00000607810.5_2_6:19803822-19804023:-|nuORF	ENST00000607810.5_2_6:19803822-19804023:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2713623046875	2	524.302927	1046.5913	-0.32628	-0.00017107	-4.0325	-0.0021142	-4.3588	-0.0022853	524.3004365384321	71.001	0.66426	71.001	70.565	71.23	0					21	16	2	0	0	0	0.027456	1	6815	6815		47.916	10.756	1	601500			25106	14288	20538	20562	27925	27925					0.06986941065179053
KNKPFRQV	8	Unmodified	_KNKPFRQV_					0	0	0		ENST00000421692.5_2_6:30003742-30025305:-|nuORF;ENST00000431012.5_1_6:30024744-30025305:-|nuORF	ENST00000421692.5_2_6:30003742-30025305:-|nuORF	ENST00000421692.5_2_6:30003742-30025305:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.2464904785156	2	508.803626	1015.5927	-0.23898	-0.0001216	-2.4409	-0.001242	-2.6799	-0.0013636	508.80282655840665	59.119	1.1439	55.727	55.35	56.494	-3.392					47	22	4	0	0	0	0.028476	1	4016	4016		12.207	0	1	108330			25107	11685	20539	20563	27926	27926					0.08552575153942144
KNKPIVNIDPH	11	Unmodified	_KNKPIVNIDPH_					0	0	0		ENSG00000226650|ENST00000435029|KIF4B	ENSG00000226650|ENST00000435029|KIF4B	ENSG00000226650|ENST00000435029|KIF4B	MULTI-SECPEP	OvCa9_classI_Rep2	2	425.7751159667969	3	425.5787	1273.71427	-0.73911	-0.00031455	3.8192	0.0016254	3.0801	0.0013108	425.58013196371047	69.21	0.24919	66.59	66.366	66.615	-2.6203					6	4	2	0	0	0	0.025818	1	5473	5473		23.378	0	1	5320.3			25108	9272	20540	20564	27927	27927					0.08836152725803004
KNKQLFRFL	9	Unmodified	_KNKQLFRFL_					0	0	0			REV__ENST00000344204.8_1_5:14508704-14508824:+|nuORF	REV__ENST00000344204.8_1_5:14508704-14508824:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	597.3582763671875	2	597.361308	1192.70806	-5.0217	-0.0029997	0.45711	0.00027306	-4.5646	-0.0027267	597.3613502692024	157	0.93945	156.78	156.54	157.48	-0.22696					63	26	4	0	0	0	0.70177	1	15992	15992		17.365	3.9109	1	80526	+		25109	24677	20541	20565	27928	27928					0.11941679284950624
KNKQLHLKY	9	Unmodified	_KNKQLHLKY_					0	0	0			REV__ENSG00000178177|ENST00000635767|LCORL	REV__ENSG00000178177|ENST00000635767|LCORL	MULTI-SECPEP	OvCa9_classI_Rep2	2	587.2958984375	2	586.35094	1170.68733	-1.8796	-0.0011021	0.72178	0.00042322	-1.1578	-0.00067887	586.3512639342055	119.24	0.29503	119.07	118.86	119.15	-0.17138					8	5	2	0	0	0	0.027462	1	11448	11448		44.117	7.67	1	14040	+		25110	22047	20542	20566	27929	27929					0.10881088905284741
KNKSGFALPE	10	Unmodified	_KNKSGFALPE_					0	0	0		tr|A0A553SQU7|A0A553SQU7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07310PE=4SV=1	tr|A0A553SQU7|A0A553SQU7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07310PE=4SV=1	tr|A0A553SQU7|A0A553SQU7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07310PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	545.7984619140625	2	545.798206	1089.58186	-0.84793	-0.0004628	0.69331	0.00037841	-0.15463	-8.4394E-05	545.7984441888154	134.15	1.3829	133.03	132.76	134.15	-1.1226					73	27	4	0	0	0	0.41408	1	10848	10848		66.429	4.3219	1	422680			25111	34199	20543	20567	27930	27930					0.04065127988997119
KNKSIVCLDI	10	Unmodified	_KNKSIVCLDI_					0	0	0			REV__ENSG00000136930|ENST00000259457|PSMB7	REV__ENSG00000136930|ENST00000259457|PSMB7	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.8057861328125	2	566.823366	1131.63218	0.39592	0.00022442	-4.3132	-0.0024448	-3.9173	-0.0022204	567.32398835873	69.926	0.25021	67.207	67.056	67.306	-2.7196					8	4	2	0	0	0	0.027028	1	3134	3134		24.519	7.0512	1	14866	+		25112	19422	20544	20568	27931	27931					0.07162914322498182
KNKSKTLDI	9	Unmodified	_KNKSKTLDI_					0	0	0			REV__nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	REV__nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	MSMS	OvCa9_classI_Rep2	2	523.8163452148438	2	523.813856	1045.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.44	1	122.22	121.72	122.72	-0.21803								0	0	0	0.16607	1	11855	11855		62.107	17.73	1		+		25113	22150	20545	20569	27932	27932					0.09217701023112568
KNKSLKELF	9	Unmodified	_KNKSLKELF_					0	0	0			REV__tr|A0A553SNS9|A0A553SNS9_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_25165PE=4SV=1	REV__tr|A0A553SNS9|A0A553SNS9_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_25165PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8311767578125	2	553.832049	1105.64954	0.13277	7.3535E-05	-3.4573	-0.0019148	-3.3245	-0.0018412	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.59259	1	13895	13895		32.812	2.3088	1	400120	+		25114	30446	20546	20570	27933	27933					0.10094577919812764
KNKSLLELA	9	Unmodified	_KNKSLLELA_					0	0	0			REV__chr7:44204650-44207388|97|13.85|0.42|5.04|+|0|YKT6,YKT6|1	REV__chr7:44204650-44207388|97|13.85|0.42|5.04|+|0|YKT6,YKT6|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.2670593261719	2	508.310949	1014.60735	-0.84702	-0.00043055	0.19519	9.9216E-05	-0.65183	-0.00033133	508.31066979029765	49.835	0.22028	49.835	49.679	49.899	0					7	4	2	0	0	0	0.027462	1	3734	3734		37.159	0	1	107090	+		25115	16095	20547	20571	27934	27934					0.10062602511425212
KNKSLMIKD	9	Unmodified	_KNKSLMIKD_					0	0	0		AKAP11|p.D1747Mfs*9|1|0.11|ENSG00000023516|chr13:42308573-42308573|A/-|frameshift_variant;ENSG00000023516|ENST00000025301|AKAP11;AKAP11|p.V710Sfs*3|1|0.03|ENSG00000023516|chr13:42300873-42300892|TGTGACCTTTACAACAAAGG/-|frameshift_variant	AKAP11|p.D1747Mfs*9|1|0.11|ENSG00000023516|chr13:42308573-42308573|A/-|frameshift_variant	AKAP11|p.D1747Mfs*9|1|0.11|ENSG00000023516|chr13:42308573-42308573|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	538.32861328125	2	538.810259	1075.60597	-0.31984	-0.00017233	-2.6271	-0.0014155	-2.947	-0.0015879	538.8085947645319	82.498	1.1382	80.9	80.593	81.731	-1.5988					42	22	3	0	0	0	0.027411	1	7128	7128		84.916	5.2029	1	134230			25116	54	20548	20572	27935	27935					0.07118645151035707
KNKTGLLAE	9	Unmodified	_KNKTGLLAE_					0	0	0			REV__ENSG00000196440|ENST00000423738|ARMCX4	REV__ENSG00000196440|ENST00000423738|ARMCX4	MULTI-MSMS	OvCa9_classI_Rep2	2	487.28662109375	2	487.287474	972.560395	-0.58577	-0.00028544	-0.5191	-0.00025295	-1.1049	-0.00053839	487.2873954078766	48.511	1.8372	45.75	45.428	47.266	-2.7603					98	36	4	0	0	0	0.22621	1	3060	3060		71.877	0.58177	1	1108600	+		25117	22826	20549	20573	27936	27936					0.0730174296027144
KNKTLIICV	9	Unmodified	_KNKTLIICV_					0	0	0		ENST00000237654.8_1_4:77969082-77969268:-|nuORF	ENST00000237654.8_1_4:77969082-77969268:-|nuORF	ENST00000237654.8_1_4:77969082-77969268:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	516.3137817382812	2	516.31772	1030.62089	-5.397	-0.0027865	-1.8495	-0.00095493	-7.2465	-0.0037415	516.3166994253895	156.49	2.0589	155.32	154.75	156.81	-1.1707					101	49	4	0	0	0	0.63422	1	13469	13469		27.882	2.4321	1	710990			25118	9745	20550	20574	27937	27937					0.10680137019016911
KNKTVLTEFI	10	Unmodified	_KNKTVLTEFI_					0	0	0		ENSG00000179615|ENST00000641114|OR2AP1	ENSG00000179615|ENST00000641114|OR2AP1	ENSG00000179615|ENST00000641114|OR2AP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.306884765625	2	596.850438	1191.68632	-0.30665	-0.00018302	-0.029577	-1.7653E-05	-0.33623	-0.00020068	596.8503257281452	50.811	0.52643	50.811	50.551	51.078	0					14	11	2	0	0	0	0.026802	1	3865	3865		51.335	10.557	1	92336			25119	7835	20551	20575	27938	27938					0.09814829745687348
KNKVANLMK	9	Unmodified	_KNKVANLMK_					0	0	0			REV__nc|ENSG00000254685|O14772-2|FPGT	REV__nc|ENSG00000254685|O14772-2|FPGT	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.312255859375	2	523.312969	1044.61138	-0.43354	-0.00022688	-0.045666	-2.3897E-05	-0.47921	-0.00025078	523.8140569854029	121.61	0.24739	121.41	121.3	121.54	-0.19719					7	4	2	0	0	0	0.027462	1	11758	11758		35.618	6.4687	1	5281.3	+		25120	23520	20552	20576	27939	27939					0.09086368733483141
KNKVEMII	8	Unmodified	_KNKVEMII_					0	0	0			REV__tr|A0A7D6VY10|A0A7D6VY10_9CLOTM23familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14030PE=4SV=1	REV__tr|A0A7D6VY10|A0A7D6VY10_9CLOTM23familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14030PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	487.78875732421875	2	487.788795	973.563038	2.065	0.0010073	-3.2562	-0.0015883	-1.1911	-0.00058103	487.7870427213753	101.13	0.87947	101.13	100.86	101.73	0					49	20	3	0	0	0	0.60331	1	11251	11251		63.306	6.8725	1	6341000	+		25121	31802	20553	20577	27940	27940					0.0751987509358969
KNKVGSISSK	10	Unmodified	_KNKVGSISSK_					0	0	0		tr|A0A7D6ZYD9|A0A7D6ZYD9_9CLOTCysteinehydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16095PE=3SV=1	tr|A0A7D6ZYD9|A0A7D6ZYD9_9CLOTCysteinehydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16095PE=3SV=1	tr|A0A7D6ZYD9|A0A7D6ZYD9_9CLOTCysteinehydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16095PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.25439453125	2	524.31148	1046.60841	-0.64384	-0.00033757	4.0964	0.0021478	3.4525	0.0018102	524.3137098115157	60.196	0.55022	60.196	59.802	60.352	0					20	13	3	0	0	0	0.026867	1	5192	5192		28.081	6.1216	1	220060			25122	35916	20554	20578	27941	27941					0.0869681688034234
KNKVKAVKP	9	Unmodified	_KNKVKAVKP_					0	0	0			REV__ENSG00000101343|ENST00000536226|CRNKL1	REV__ENSG00000101343|ENST00000536226|CRNKL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.8124084472656	2	506.337301	1010.66005	0.054272	2.748E-05	-4.186	-0.0021195	-4.1317	-0.002092	506.83759551658096	90.176	0.30075	87.601	87.501	87.801	-2.575					6	5	2	0	0	0	0.027462	1	7752	7752		35.618	11.416	1	6725.2	+		25123	17492	20555	20579	27942	27942					0.15514605364887757
KNKVLLEL	8	Unmodified	_KNKVLLEL_					0	0	0			REV__tr|A0A7D7A6L9|A0A7D7A6L9_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_11295PE=4SV=1	REV__tr|A0A7D7A6L9|A0A7D7A6L9_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_11295PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.793212890625	2	478.810585	955.606617	-0.036723	-1.7583E-05	-3.7522	-0.0017966	-3.7889	-0.0018142	478.80845284951386	83.302	0.14636	80.639	80.534	80.681	-2.6629					4	2	2	0	0	0	0.028476	1	6916	6916		27.882	6.9353	1	7922.6	+		25124	32661	20556	20580	27943	27943					0.12703807862362737
KNKVLNKLP	9	Unmodified	_KNKVLNKLP_					0	0	0			REV__ENSG00000164134|ENST00000296543|NAA15	REV__ENSG00000164134|ENST00000296543|NAA15	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.293701171875	2	527.342584	1052.67061	2.4763	0.0013058	3.5687	0.0018819	6.0449	0.0031878	527.3443357646146	86.504	0.94315	86.504	86.153	87.096	0					67	22	4	0	0	0	0.027462	1	9205	9205		37.159	9.2769	1	5113500	+		25125	20948	20557	20581	27944	27944					0.1463858801932929
KNKVPAESL	9	Unmodified	_KNKVPAESL_					0	0	0		tr|A0A553SGR8|A0A553SGR8_NIACIManganesecatalasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_11335PE=3SV=1	tr|A0A553SGR8|A0A553SGR8_NIACIManganesecatalasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_11335PE=3SV=1	tr|A0A553SGR8|A0A553SGR8_NIACIManganesecatalasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_11335PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.2890319824219	2	493.287474	984.560395	0.78535	0.0003874	-0.67126	-0.00033112	0.11409	5.6279E-05	493.2867946649882	67.06	1.1345	63.57	63.295	64.43	-3.4902					50	22	4	0	0	0	0.14998	1	4919	4919		84.916	8.1414	1	412210			25126	33187	20558	20582	27945	27945					0.06749742960278127
KNKVQLITY	9	Unmodified	_KNKVQLITY_					0	0	0		tr|A0A7D6ZMX2|A0A7D6ZMX2_9CLOTSucrosephosphorylaseOS=ClostridiumintestinaleOX=36845GN=gtfAPE=3SV=1	tr|A0A7D6ZMX2|A0A7D6ZMX2_9CLOTSucrosephosphorylaseOS=ClostridiumintestinaleOX=36845GN=gtfAPE=3SV=1	tr|A0A7D6ZMX2|A0A7D6ZMX2_9CLOTSucrosephosphorylaseOS=ClostridiumintestinaleOX=36845GN=gtfAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	553.830078125	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.68424	1	14336	14336		21.96	0	1	245610			25127	35669	20559	20583	27946	27946					0.10094577919812764
KNLAIVPTS	9	Unmodified	_KNLAIVPTS_					0	0	0			REV__tr|A0A553SRC9|A0A553SRC9_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00830PE=4SV=1	REV__tr|A0A553SRC9|A0A553SRC9_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00830PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.7961120605469	2	471.784567	941.554582	0.010872	5.1291E-06	3.2545	0.0015354	3.2653	0.0015405	471.7840793363575	80.67	0.34007	77.96	77.81	78.15	-2.7106					9	6	2	0	0	0	0.027462	1	6587	6587		27.882	6.9353	1	10574	+		25128	30720	20560	20584	27947	27947					0.08146644448629559
KNLAVNTLP	9	Unmodified	_KNLAVNTLP_					0	0	0			REV__nc|ENSG00000123977|Q8N136-2|DAW1	REV__nc|ENSG00000123977|Q8N136-2|DAW1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.25555419921875	2	485.290017	968.565481	0.7523	0.00036508	-0.47342	-0.00022975	0.27888	0.00013534	485.28976746059	110.6	0.63093	109	108.86	109.49	-1.6011					17	11	2	0	0	0	0.027462	1	10233	10233		20.947	0	1	10819	+		25129	18655	20561	20585	27948	27948					0.07994046822898326
KNLDKALKL	9	Unmodified	_KNLDKALKL_					0	0	0		ENSG00000184254|ENST00000329841|ALDH1A3	ENSG00000184254|ENST00000329841|ALDH1A3	ENSG00000184254|ENST00000329841|ALDH1A3	MULTI-MSMS	OvCa99_classI_Rep5	1	521.8355102539062	2	521.834591	1041.65463	0.78463	0.00040945	1.4574	0.00076053	2.242	0.00117	521.8351181191163	113.99	0.72277	113.99	113.66	114.38	0					34	15	3	0	0	0	0.33652	1	13013	13013		58.782	0.97068	1	382260			25130	8140	20562	20586	27949	27949					0.13546881782394848
KNLDTQEEL	9	Unmodified	_KNLDTQEEL_					0	0	0			REV__SLITRK4|p.A833D|1|0.36|ENSG00000179542|chrX:143628611-143628611|G/T|missense_variant	REV__SLITRK4|p.A833D|1|0.36|ENSG00000179542|chrX:143628611-143628611|G/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	545.2756958007812	2	545.274761	1088.53497	1.2966	0.00070701	1.2008	0.00065475	2.4974	0.0013618	545.2754507406441	147.03	0.78777	147.03	146.62	147.41	0					27	15	2	0	0	0	0.59259	1	17229	17229		32.812	1.1781	1	107030	+		25131	29375	20563	20587	27950	27950					-0.005757763527981297
KNLEVLENP	9	Unmodified	_KNLEVLENP_					0	0	0			REV__NCOA7|p.K137E|1|0.09|ENSG00000111912|chr6:125878320-125878320|A/G|missense_variant	REV__NCOA7|p.K137E|1|0.09|ENSG00000111912|chr6:125878320-125878320|A/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.288818359375	2	528.290214	1054.56587	-1.5603	-0.00082432	1.6597	0.00087682	0.099379	5.2501E-05	528.2907178031604	50.249	0.94055	47.455	47.232	48.172	-2.794					26	18	2	0	0	0	0.027462	1	3240	3240		26.693	4.733	1	41448	+		25132	29245	20564	20588	27951	27951					0.040774217520947786
KNLFSKLAI	9	Unmodified	_KNLFSKLAI_					0	0	0			REV__tr|A0A7D6ZQ70|A0A7D6ZQ70_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23185PE=4SV=1	REV__tr|A0A7D6ZQ70|A0A7D6ZQ70_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23185PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.3251342773438	2	517.32386	1032.63317	-0.42673	-0.00022076	-0.57604	-0.000298	-1.0028	-0.00051876	517.3235491607991	105.41	2.6032	103.4	102.95	105.55	-2.0161					144	50	4	0	0	0	0.28934	1	9621	9621		64.207	2.0999	1	3949100	+		25133	32144	20565	20589	27952	27952					0.11815496753706611
KNLFSKLVSA	10	Unmodified	_KNLFSKLVSA_					0	0	0			REV__ENST00000392722.3_1_X:100792574-100792805:-|nuORF	REV__ENST00000392722.3_1_X:100792574-100792805:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	553.82958984375	2	553.832049	1105.64954	-2.2198	-0.0012294	-1.4062	-0.0007788	-3.626	-0.0020082	553.8311075714116	139.08	3.9663	138.02	135.98	139.95	-1.0595					202	80	4	0	0	0	0.69073	1	11371	11371		31.53	3.6476	1	74733	+		25134	20852	20566	20590	27953	27953					0.10094577919812764
KNLFSKLVSA	10	Unmodified	_KNLFSKLVSA_					0	0	0			REV__ENST00000392722.3_1_X:100792574-100792805:-|nuORF	REV__ENST00000392722.3_1_X:100792574-100792805:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8300170898438	2	553.832049	1105.64954	0.13277	7.3535E-05	-3.4573	-0.0019148	-3.3245	-0.0018412	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.74374	1	14122	14122		25.574	1.3713	1	400120	+		25135	20852	20566	20590	27954	27954					0.10094577919812764
KNLGTIAKSGT	11	Unmodified	_KNLGTIAKSGT_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;HSP90B1|p.I687Vfs*9|1|0.07|ENSG00000166598|chr12:103946648-103946649|-/GTGCTCCAGGTACTTGGGACTC|frameshift_variant;ENST00000548462.5_1_12:104324233-104336580:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3161010742188	2	545.316763	1088.61897	-2.8527	-0.0015556	2.7212	0.0014839	-0.13151	-7.1714E-05	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.68757	1	11778	11778		33.922	2.3918	1	337600			25136	6697	20567	20591	27955	27955					0.07820799534783873
KNLHKIDI	8	Unmodified	_KNLHKIDI_					0	0	0			REV__tr|A0A7D6W432|A0A7D6W432_9CLOTAminoacidABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03120PE=4SV=1	REV__tr|A0A7D6W432|A0A7D6W432_9CLOTAminoacidABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03120PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.9234313964844	2	490.798009	979.581465	-0.62147	-0.00030502	0.47459	0.00023293	-0.14689	-7.2093E-05	490.7979108253963	61.776	0.66675	61.776	61.542	62.209	0					23	15	2	0	0	0	0.028476	1	5470	5470		47.916	18.766	1	560090	+		25137	31933	20568	20592	27956	27956					0.09085753059787294
KNLIKAYIN	9	Unmodified	_KNLIKAYIN_					0	0	0			REV__L1PA6_dup2267|chr6:2299837-2303022:+|1.5111882528479883|0.3006554191737456|2.33|429.0|66|3|sense	REV__L1PA6_dup2267|chr6:2299837-2303022:+|1.5111882528479883|0.3006554191737456|2.33|429.0|66|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.775146484375	2	538.826766	1075.63898	2.4493	0.0013197	-0.46426	-0.00025015	1.985	0.0010696	538.8264360267145	76.004	0.5639	76.004	75.801	76.365	0					30	13	3	0	0	0	0.027462	1	7642	7642		21.96	12.777	1	3248400	+		25138	28520	20569	20593	27957	27957					0.1041859526535518
KNLILKILV	9	Unmodified	_KNLILKILV_					0	0	0		nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-2|ATP2C1	nc|ENSG00000017260|P98194-3|ATP2C1	nc|ENSG00000017260|P98194-3|ATP2C1	MSMS	OvCa99_classI_Rep5	1	527.372802734375	2	527.373352	1052.73215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.1	1	104.1	103.6	104.6	0								0	0	0	0.16648	1	11656	11656		60.972	5.4677	1				25139	14865	20570	20594	27958	27958					0.2078951971859624
KNLILKILV	9	Unmodified	_KNLILKILV_					0	0	0		nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-2|ATP2C1	nc|ENSG00000017260|P98194-3|ATP2C1	nc|ENSG00000017260|P98194-3|ATP2C1	MSMS	OvCa99_classI_Rep5	1	527.3749389648438	2	527.373352	1052.73215	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.27	1	104.27	103.77	104.77	0								0	0	0	0.079017	1	11680	11680		73.975	2.679	1				25140	14865	20570	20594	27959	27959					0.2078951971859624
KNLITRACK	9	Unmodified	_KNLITRACK_					0	0	0			REV__ENST00000597476.5_1_19:41285769-41292865:+|nuORF	REV__ENST00000597476.5_1_19:41285769-41292865:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.805419921875	2	523.810593	1045.60663	0.80183	0.00042001	-1.3021	-0.00068205	-0.50025	-0.00026204	523.809385519277	92.175	0.68417	90.94	90.694	91.378	-1.2355					21	12	2	0	0	0	0.027441	1	8187	8187		49.442	16.629	1	23601	+		25141	28000	20571	20595	27960	27960					0.08565484590712913
KNLIVISII	9	Unmodified	_KNLIVISII_					0	0	0		tr|A0A7D6VSJ2|A0A7D6VSJ2_9CLOTFlagellarbiosyntheticproteinFlhBOS=ClostridiumintestinaleOX=36845GN=flhBPE=3SV=1	tr|A0A7D6VSJ2|A0A7D6VSJ2_9CLOTFlagellarbiosyntheticproteinFlhBOS=ClostridiumintestinaleOX=36845GN=flhBPE=3SV=1	tr|A0A7D6VSJ2|A0A7D6VSJ2_9CLOTFlagellarbiosyntheticproteinFlhBOS=ClostridiumintestinaleOX=36845GN=flhBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3173828125	2	506.841885	1011.66922	2.2671	0.001149	-1.7362	-0.00087999	0.53085	0.00026905	506.8410007669251	108.31	0.16839	108.31	108.2	108.37	0					5	3	2	0	0	0	0.027402	1	12247	12247		66.429	20.457	1	49931			25142	35030	20572	20596	27961	27961					0.16384953930560187
KNLKKFVAF	9	Unmodified	_KNLKKFVAF_					0	0	0			REV__ENST00000424279.5_1_X:9685823-9685994:+|nuORF	REV__ENST00000424279.5_1_X:9685823-9685994:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.813232421875	2	547.839677	1093.6648	2.1682	0.0011878	0.97471	0.00053398	3.1429	0.0017218	548.3416986542813	106.49	0.3999	106.49	106.27	106.67	0					12	8	2	0	0	0	0.027462	1	11984	11984		30.504	0	1	139550	+		25143	25641	20573	20597	27962	27962					0.12171489507659317
KNLKLTNI	8	Unmodified	_KNLKLTNI_					0	0	0		ENSG00000171206|ENST00000643721|TRIM8	ENSG00000171206|ENST00000643721|TRIM8	ENSG00000171206|ENST00000643721|TRIM8	MULTI-MSMS	OvCa99_classI_Rep5	1	472.301025390625	2	472.300384	942.586216	-0.3221	-0.00015213	0.13911	6.57E-05	-0.18299	-8.6427E-05	472.3002788124053	48.212	0.51687	48.212	47.984	48.501	0					26	11	3	0	0	0	0.48084	1	3524	3524		79.451	4.4077	1	1125500			25144	7182	20574	20598	27963	27963					0.11262637202537462
KNLKLVPL	8	Unmodified	_KNLKLVPL_					0	0	0		nc|ENSG00000214954|Q6ZNQ3-2|LRRC69;ENSG00000214954|ENST00000448384|LRRC69	nc|ENSG00000214954|Q6ZNQ3-2|LRRC69	nc|ENSG00000214954|Q6ZNQ3-2|LRRC69	MULTI-SECPEP	OvCa99_classI_Rep5	1	462.3224792480469	2	462.81567	923.616788	0.77016	0.00035644	4.3025	0.0019913	5.0727	0.0023477	462.81614555552466	159.04	1.0202	159.04	158.74	159.76	0					25	20	2	0	0	0	0.028476	1	18698	18698		25.45	1.2474	1	59554			25145	9193	20575	20599	27964	27964					0.15192415587591768
KNLLEVINL	9	Unmodified	_KNLLEVINL_					0	0	0		tr|A0A7D7A4Q3|A0A7D7A4Q3_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04090PE=4SV=1	tr|A0A7D7A4Q3|A0A7D7A4Q3_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04090PE=4SV=1	tr|A0A7D7A4Q3|A0A7D7A4Q3_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04090PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.2398681640625	2	528.326599	1054.63865	-1.199	-0.00063345	-0.28037	-0.00014813	-1.4794	-0.00078158	528.3263107739269	103.59	0.5744	101.47	101.28	101.85	-2.1192					26	10	3	0	0	0	0.027411	1	9359	9359		77.318	34.843	1	101000			25146	36151	20576	20600	27965	27965					0.11351175545519254
KNLLEVINL	9	Unmodified	_KNLLEVINL_					0	0	0		tr|A0A7D7A4Q3|A0A7D7A4Q3_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04090PE=4SV=1	tr|A0A7D7A4Q3|A0A7D7A4Q3_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04090PE=4SV=1	tr|A0A7D7A4Q3|A0A7D7A4Q3_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04090PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	528.326599	1054.63865	-1.5278	-0.00080718	0.13335	7.045E-05	-1.3945	-0.00073673	528.3263977076742	102.11	0.93936	101.37	101.18	102.12	-0.74206	-0.044721	0.00048332	NaN	77.318	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97999			25147	36151	20576	20600							0.11351175545519254
KNLLEVINL	9	Unmodified	_KNLLEVINL_					0	0	0		tr|A0A7D7A4Q3|A0A7D7A4Q3_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04090PE=4SV=1	tr|A0A7D7A4Q3|A0A7D7A4Q3_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04090PE=4SV=1	tr|A0A7D7A4Q3|A0A7D7A4Q3_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04090PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	528.326599	1054.63865	-0.56923	-0.00030074	-0.88207	-0.00046602	-1.4513	-0.00076676	528.3259450795225	102.93	0.57568	101.4	101.21	101.78	-1.5211	-0.011747	-0.00058962	NaN	77.318	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122090			25148	36151	20576	20600							0.11351175545519254
KNLLKALRK	9	Unmodified	_KNLLKALRK_					0	0	0		ENSG00000159212|ENST00000349499|CLIC6;nc|ENSG00000159212|Q96NY7|CLIC6	ENSG00000159212|ENST00000349499|CLIC6	ENSG00000159212|ENST00000349499|CLIC6	MULTI-MSMS	OvCa9_classI_Rep2	2	542.3704223632812	2	542.371675	1082.7288	0.093673	5.0806E-05	-0.44981	-0.00024396	-0.35614	-0.00019316	542.3713013214245	41.12	2.1196	38.411	38.093	40.213	-2.7097					118	42	4	0	0	0	0.56889	1	2172	2172		35.618	6.4687	1	313610			25149	5995	20577	20601	27966	27966					0.19074269664611165
KNLLKPCLI	9	Unmodified	_KNLLKPCLI_					0	0	0			REV__ENSG00000179542|ENST00000356928|SLITRK4	REV__ENSG00000179542|ENST00000356928|SLITRK4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.8121337890625	2	521.328088	1040.64162	2.1646	0.0011285	3.8678	0.0020164	6.0324	0.0031449	521.3298266202398	136	1.2682	134.45	134.2	135.47	-1.5437					55	25	4	0	0	0	0.027462	1	13248	13248		16.473	0	1	77859	+		25150	22128	20578	20602	27967	27967					0.12292727398676107
KNLLKPCLI	9	Unmodified	_KNLLKPCLI_					0	0	0			REV__ENSG00000179542|ENST00000356928|SLITRK4	REV__ENSG00000179542|ENST00000356928|SLITRK4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	521.328088	1040.64162	-0.8884	-0.00046315	6.9032	0.0035988	6.0148	0.0031357	521.3314946925697	135.69	1.0334	134.58	134.31	135.34	-1.1076	0.062202	0.0011661	NaN	35.618	40	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52441	+		25151	22128	20578	20602							0.12292727398676107
KNLLPSWYVQ	10	Unmodified	_KNLLPSWYVQ_					0	0	0			REV__ENSG00000115020|ENST00000264380|PIKFYVE	REV__ENSG00000115020|ENST00000264380|PIKFYVE	MULTI-SECPEP	OvCa9_classI_Rep4_	4	415.7230224609375	3	416.564279	1246.67101	-0.77987	-0.00032486	-3.3247	-0.001385	-4.1046	-0.0017098	416.5630198710293	46.099	0.781	43.027	42.771	43.552	-3.0724					42	14	4	0	0	0	0.027165	1	2392	2392		10.104	0.92098	1	114450	+		25152	18214	20579	20603	27968	27968					0.057539629485063415
KNLLSRSIN	9	Unmodified	_KNLLSRSIN_					0	0	0			REV__tr|A0A553SLK5|A0A553SLK5_NIACIHDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20795PE=4SV=1	REV__tr|A0A553SLK5|A0A553SLK5_NIACIHDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20795PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.3006591796875	2	522.811648	1043.60874	1.3191	0.00068966	4.4903	0.0023476	5.8094	0.0030372	522.8139100958708	112.62	0.4035	112.62	112.34	112.74	0					12	8	2	0	0	0	0.027462	1	12830	12830		29.15	0	1	59484	+		25153	30235	20580	20604	27969	27969					0.08868236600187629
KNLLSRSIN	9	Unmodified	_KNLLSRSIN_					0	0	0			REV__tr|A0A553SLK5|A0A553SLK5_NIACIHDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20795PE=4SV=1	REV__tr|A0A553SLK5|A0A553SLK5_NIACIHDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20795PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	522.811648	1043.60874	0.42179	0.00022052	2.7826	0.0014548	3.2044	0.0016753	523.3142080220207	113.89	0.47058	112.84	112.58	113.05	-1.055	0.10905	-0.0012949	NaN	26.693	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10099	+		25154	30235	20580	20604							0.08868236600187629
KNLLVSKFTT	10	Unmodified	_KNLLVSKFTT_					0	0	0			REV__ENSG00000196074|ENST00000357552|SYCP2	REV__ENSG00000196074|ENST00000357552|SYCP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8425903320312	2	575.845156	1149.67576	-1.5734	-0.00090602	-1.7064	-0.00098265	-3.2798	-0.0018887	575.8439449675558	145.55	4.7888	144.12	142.78	147.57	-1.4357					360	93	6	0	0	0	0.75313	1	14550	14550		24.519	2.5593	1	565210	+		25155	22780	20581	20605	27970	27970					0.10690847091291289
KNLLWEFP	8	Unmodified	_KNLLWEFP_					0	0	0		ENST00000360635.7_1_2:9548264-9552405:-|nuORF	ENST00000360635.7_1_2:9548264-9552405:-|nuORF	ENST00000360635.7_1_2:9548264-9552405:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.7686157226562	2	523.78711	1045.55967	1.6554	0.00086706	3.087	0.0016169	4.7424	0.002484	523.7881437586819	85.628	0.41515	85.628	85.334	85.75	0					13	9	2	0	0	0	0.028476	1	8984	8984		31.955	0	1	216800			25156	10777	20582	20606	27971	27971					0.038709483112370435
KNLNELEQA	9	Unmodified	_KNLNELEQA_					0	0	0			REV__nc|ENSG00000065989|P27815-4|PDE4A	REV__nc|ENSG00000065989|P27815-4|PDE4A	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.3084716796875	2	529.77747	1057.54039	-0.59647	-0.000316	2.121	0.0011237	1.5246	0.00080768	529.7784427835336	53.695	0.69807	53.695	53.432	54.13	0					27	16	3	0	0	0	0.027411	1	4277	4277		54.776	7.119	1	1227100	+		25157	28723	20583	20607	27972	27972					0.01391947229649304
KNLNEVYD	8	Unmodified	_KNLNEVYD_					0	0	0			REV__nc|ENSG00000129003|Q709C8-4|VPS13C	REV__nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	OvCa9_classI_Rep3	3	497.74395751953125	2	497.745639	993.476725	1.0884	0.00054174	-1.5068	-0.00075001	-0.41842	-0.00020827	497.744698590085	126.64	0.9929	125.57	125.23	126.22	-1.0715					40	18	3	0	0	0	0.73494	1	9884	9884		34.173	3.6689	1	123940	+		25158	18881	20584	20608	27973	27973					-0.020274132074405316
KNLPVQPAT	9	Unmodified	_KNLPVQPAT_					0	0	0		nc|ENSG00000164113|Q96M93-3|ADAD1;nc|ENSG00000164113|Q96M93-2|ADAD1;ENSG00000164113|ENST00000296513|ADAD1	nc|ENSG00000164113|Q96M93-3|ADAD1	nc|ENSG00000164113|Q96M93-3|ADAD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.2645568847656	2	484.282192	966.549831	-0.90387	-0.00043773	1.1112	0.00053813	0.20732	0.0001004	484.28235434748547	55.323	0.86401	52.028	51.854	52.718	-3.2944					23	16	2	0	0	0	0.027462	1	3556	3556		15.642	0.0055962	1	20002			25159	6412	20585	20609	27974	27974					0.06521760305838598
KNLPVVCFL	9	Unmodified	_KNLPVVCFL_					0	0	0			REV__ENST00000299300.10_1_12:69991432-69991465:+|nuORF	REV__ENST00000299300.10_1_12:69991432-69991465:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.3228149414062	2	516.799163	1031.58377	-0.5946	-0.00030729	-2.5605	-0.0013233	-3.1551	-0.0016305	517.298668508438	103.76	0.34563	103.19	102.93	103.28	-0.57639					9	6	2	0	0	0	0.027462	1	9597	9597		26.796	0	1	25111	+		25160	24220	20586	20610	27975	27975					0.06924465473252894
KNLPYGQQR	9	Unmodified	_KNLPYGQQR_					0	0	0		tr|A0A553SHV9|A0A553SHV9_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13700PE=4SV=1	tr|A0A553SHV9|A0A553SHV9_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13700PE=4SV=1	tr|A0A553SHV9|A0A553SHV9_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13700PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	552.8362426757812	2	552.301447	1102.58834	-0.55545	-0.00030678	-2.8565	-0.0015776	-3.4119	-0.0018844	552.3010565786432	109.21	0.87917	108.02	107.37	108.25	-1.1934					24	16	2	0	0	0	0.027462	1	7854	7854		35.618	12.096	1	14546			25161	33318	20587	20611	27976	27976					0.04115065940391105
KNLQAIILL	9	Unmodified	_KNLQAIILL_					0	0	0		tr|A0A553SLF2|A0A553SLF2_NIACIToxinOS=NialliacirculansOX=1397GN=CEQ21_20540PE=4SV=1	tr|A0A553SLF2|A0A553SLF2_NIACIToxinOS=NialliacirculansOX=1397GN=CEQ21_20540PE=4SV=1	tr|A0A553SLF2|A0A553SLF2_NIACIToxinOS=NialliacirculansOX=1397GN=CEQ21_20540PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	513.3391723632812	2	513.33951	1024.66447	0.26251	0.00013476	-0.12145	-6.2346E-05	0.14106	7.2412E-05	513.3392991785511	133.58	0.78902	133.35	133.07	133.85	-0.22696					35	15	3	0	0	0	0.55588	1	13219	13219		37.159	1.5408	1	45813			25162	33717	20588	20612	27977	27977					0.15312069787796645
KNLQEEISD	9	Unmodified	_KNLQEEISD_					0	0	0		MYH6|p.K1758Lfs*37|1|0.03|ENSG00000197616|chr14:23384933-23384934|-/TGAG|frameshift_variant;ENSG00000197616|ENST00000405093|MYH6;ENSG00000092054|ENST00000355349|MYH7;MYH13|p.Q1539Hfs*44|1|0.11|ENSG00000006788|chr17:10311142-10311143|-/G|frameshift_variant;ENSG00000006788|ENST00000252172|MYH13	MYH6|p.K1758Lfs*37|1|0.03|ENSG00000197616|chr14:23384933-23384934|-/TGAG|frameshift_variant;MYH13|p.Q1539Hfs*44|1|0.11|ENSG00000006788|chr17:10311142-10311143|-/G|frameshift_variant	MYH13|p.Q1539Hfs*44|1|0.11|ENSG00000006788|chr17:10311142-10311143|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.2864379882812	2	538.266936	1074.51932	-0.94868	-0.00051064	-2.8088	-0.0015119	-3.7575	-0.0020225	538.2645589260262	76.358	1.2819	73.419	72.79	74.072	-2.9389					47	26	3	0	0	0	0.027462	1	6022	6022		21.96	1.9631	1	79407			25163	14848;8730	20589	20613	27978	27978					-0.01496062869864545
KNLQEEISD	9	Unmodified	_KNLQEEISD_					0	0	0		MYH6|p.K1758Lfs*37|1|0.03|ENSG00000197616|chr14:23384933-23384934|-/TGAG|frameshift_variant;ENSG00000197616|ENST00000405093|MYH6;ENSG00000092054|ENST00000355349|MYH7;MYH13|p.Q1539Hfs*44|1|0.11|ENSG00000006788|chr17:10311142-10311143|-/G|frameshift_variant;ENSG00000006788|ENST00000252172|MYH13	MYH6|p.K1758Lfs*37|1|0.03|ENSG00000197616|chr14:23384933-23384934|-/TGAG|frameshift_variant;MYH13|p.Q1539Hfs*44|1|0.11|ENSG00000006788|chr17:10311142-10311143|-/G|frameshift_variant	MYH13|p.Q1539Hfs*44|1|0.11|ENSG00000006788|chr17:10311142-10311143|-/G|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	538.266936	1074.51932	-1.3185	-0.00070969	-3.343	-0.0017994	-4.6615	-0.0025091	538.7670696685182	75.438	0.98198	73.584	73.167	74.149	-1.854	0.082316	-0.00024715	NaN	21.96	27	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28232			25164	14848;8730	20589	20613							-0.01496062869864545
KNLQNWLVRA	10	Unmodified	_KNLQNWLVRA_					0	0	0			REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.86932373046875	3	414.57529	1240.70404	1.0389	0.00043072	-0.49156	-0.00020379	0.54739	0.00022693	414.57498217512006	67.292	0.46971	67.292	67.096	67.566	0					19	11	2	0	0	0	0.026849	1	6266	6266		30.569	4.6771	1	399560	+		25165	19775	20590	20614	27979	27979					0.09331589791213446
KNLSDEQAL	9	Unmodified	_KNLSDEQAL_					0	0	0			REV__ENST00000450512.1_3_15:100271609-100273550:-|nuORF	REV__ENST00000450512.1_3_15:100271609-100273550:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	509.2670593261719	2	509.264196	1016.51384	-0.80465	-0.00040978	1.5291	0.00077869	0.7244	0.00036891	509.26456317209255	49.656	0.5704	49.656	49.373	49.944	0					27	12	3	0	0	0	0.3249	1	3734	3734		60.118	5.3419	1	1175100	+		25166	22338	20591	20615	27980	27980					0.006242583383254896
KNLSDEQAL	9	Unmodified	_KNLSDEQAL_					0	0	0			REV__ENST00000450512.1_3_15:100271609-100273550:-|nuORF	REV__ENST00000450512.1_3_15:100271609-100273550:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	509.264196	1016.51384	-0.80465	-0.00040978	1.5291	0.00077869	0.7244	0.00036891	509.26456317209255	49.656	0.5704	49.656	49.373	49.944	0	0	0	NaN	60.118	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1175100	+		25167	22338	20591	20615							0.006242583383254896
KNLSNLIEL	9	Unmodified	_KNLSNLIEL_					0	0	0			REV__tr|A0A7D6VSX6|A0A7D6VSX6_9CLOTGeranyltranstransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14470PE=3SV=1	REV__tr|A0A7D6VSX6|A0A7D6VSX6_9CLOTGeranyltranstransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14470PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.3104858398438	2	522.308406	1042.60226	-1.3075	-0.00068294	-0.50604	-0.00026431	-1.8136	-0.00094724	522.3076708198822	53.786	1.7405	50.538	50.161	51.901	-3.2474					72	33	4	0	0	0	0.083631	1	3296	3296		101.6	0	1	1360800	+		25168	31551	20592	20616	27981	27981					0.0826629864880033
KNLSYFDL	8	Unmodified	_KNLSYFDL_					0	0	0		tr|A0A553SU87|A0A553SU87_NIACIDUF916andDUF3324domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06465PE=4SV=1	tr|A0A553SU87|A0A553SU87_NIACIDUF916andDUF3324domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06465PE=4SV=1	tr|A0A553SU87|A0A553SU87_NIACIDUF916andDUF3324domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06465PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.294189453125	2	500.260925	998.507297	0.5822	0.00029125	-3.4408	-0.0017213	-2.8586	-0.00143	500.25906847008554	74.373	0.86996	74.373	74.135	75.005	0					41	21	3	0	0	0	0.028476	1	7391	7391		26.693	0	1	2357100			25169	34583	20593	20617	27982	27982					0.007983651776157785
KNLTATLVL	9	Unmodified	_KNLTATLVL_					0	0	0		ENSG00000152240|ENST00000282058|HAUS1;nc|ENSG00000152240|Q96CS2-2|HAUS1	ENSG00000152240|ENST00000282058|HAUS1	ENSG00000152240|ENST00000282058|HAUS1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.8100891113281	2	486.808042	971.601532	-0.096422	-4.6939E-05	4.2465	0.0020672	4.1501	0.0020203	486.80997360124303	130.23	1.3225	129.12	128.88	130.21	-1.1121					55	26	3	0	0	0	0.56889	1	10388	10388		35.618	5.1146	1	142420			25170	5614	20594	20618	27983	27983					0.11459503999742537
KNLTEEVEF	9	Unmodified	_KNLTEEVEF_					0	0	0		ENSG00000144821|ENST00000693548|MYH15;ENST00000478998.5_1_3:108124174-108178278:-|nuORF	ENSG00000144821|ENST00000693548|MYH15	ENSG00000144821|ENST00000693548|MYH15	MULTI-SECPEP	OvCa9_classI_Rep3	3	554.8233032226562	2	554.779679	1107.5448	-1.2502	-0.00069357	0.59943	0.00033255	-0.65075	-0.00036102	554.7798839469154	101.91	0.73373	100.39	100	100.74	-1.5211					25	13	3	0	0	0	0.027462	1	6944	6944		21.96	3.6978	1	12639			25171	5183	20595	20619	27984	27984					-0.00466588347421748
KNLVEPKQKK	10	Unmodified	_KNLVEPKQKK_					0	0	0			REV__SUPT16H|p.L340V|1|0.06|ENSG00000092201|chr14:21366467-21366467|G/C|missense_variant	REV__SUPT16H|p.L340V|1|0.06|ENSG00000092201|chr14:21366467-21366467|G/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	405.23828125	3	404.587195	1210.73976	0.67573	0.00027339	-1.1702	-0.00047343	-0.49442	-0.00020004	404.5867140446957	45.91	0.57417	42.837	42.509	43.083	-3.0724					27	10	4	0	0	0	0.026596	1	2365	2365		51.528	6.5056	1	24637	+		25172	29465	20596	20620	27985	27985					0.14281627248215045
KNLWKLGP	8	Unmodified	_KNLWKLGP_					0	0	0			REV__ENSG00000168310|ENST00000393593|IRF2	REV__ENSG00000168310|ENST00000393593|IRF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.76318359375	2	478.28982	954.565087	-0.076853	-3.6758E-05	-4.3677	-0.002089	-4.4446	-0.0021258	478.28765801656266	56.408	0.73897	56.408	56.094	56.833	0					23	17	3	0	0	0	0.028476	1	4673	4673		25.45	0	1	536410	+		25173	21362	20597	20621	27986	27986					0.08598671893696519
KNMADKLLI	9	Unmodified	_KNMADKLLI_					0	0	0		tr|A0A7D6W444|A0A7D6W444_9CLOTRibosomalL7Ae/L30e/S12e/Gadd45familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10680PE=4SV=1	tr|A0A7D6W444|A0A7D6W444_9CLOTRibosomalL7Ae/L30e/S12e/Gadd45familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10680PE=4SV=1	tr|A0A7D6W444|A0A7D6W444_9CLOTRibosomalL7Ae/L30e/S12e/Gadd45familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10680PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.7686157226562	2	523.307352	1044.60015	1.6348	0.00085548	1.2613	0.00066003	2.896	0.0015155	523.3079325242628	85.675	0.45695	85.675	85.334	85.791	0					11	10	2	0	0	0	0.027462	1	8984	8984		27.882	0	1	440880			25174	35468	20598	20622	27987	27987					0.07963546639348351
KNMCILHSI	9	Unmodified	_KNMCILHSI_					0	0	0		ENSG00000196772|ENST00000641093|OR14A16	ENSG00000196772|ENST00000641093|OR14A16	ENSG00000196772|ENST00000641093|OR14A16	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.3076782226562	2	529.777905	1057.54126	-0.48778	-0.00025842	2.1659	0.0011474	1.6781	0.00088902	529.7783942780646	55.562	0.40799	55.562	55.315	55.723	0					22	9	3	0	0	0	0.027402	1	4520	4520		56.721	0	1	776280			25175	8648	20599	20623	27988	27988					0.014787470733608643
KNMEEMLGGGG	11	Unmodified	_KNMEEMLGGGG_					0	0	0			REV__nc|ENSG00000196405|Q9UI08-4|EVL	REV__nc|ENSG00000196405|Q9UI08-4|EVL	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.75146484375	2	561.749541	1121.48453	1.5754	0.000885	0.51746	0.00029068	2.0929	0.0011757	561.7497335181421	122.59	1.041	121.23	120.96	122	-1.3666					44	20	3	0	0	0	0.71498	1	11575	11575		24.519	0	1	82022	+		25176	22822	20600	20624	27989	27989					-0.07135345273809435
KNMIERAKK	9	Unmodified	_KNMIERAKK_					0	0	0		tr|A0A553SRG0|A0A553SRG0_NIACIClassISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_01025PE=4SV=1	tr|A0A553SRG0|A0A553SRG0_NIACIClassISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_01025PE=4SV=1	tr|A0A553SRG0|A0A553SRG0_NIACIClassISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_01025PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.7660522460938	2	559.32915	1116.64375	0.37507	0.00020979	3.1889	0.0017837	3.564	0.0019934	559.3309477310378	22.355	0.33838	22.355	22.142	22.481	0					10	7	2	0	0	0	0.027462	1	202	202		16.473	0	1	39913			25177	34260	20601	20625	27990	27990					0.09009156136471574
KNMIHMLY	8	Unmodified	_KNMIHMLY_					0	0	0		ENSG00000196620|ENST00000338206|UGT2B15	ENSG00000196620|ENST00000338206|UGT2B15	ENSG00000196620|ENST00000338206|UGT2B15	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.3211059570312	2	525.267173	1048.51979	0.10632	5.5846E-05	2.5658	0.0013477	2.6721	0.0014036	525.2685965514862	108.8	0.39552	108.58	108.22	108.62	-0.22498					12	7	2	0	0	0	0.028476	1	10171	10171		57.453	12.922	1	11762			25178	8636	20602	20626	27991	27991					-0.0025263795532737277
KNMIHMLY	8	Unmodified	_KNMIHMLY_					0	0	0		ENSG00000196620|ENST00000338206|UGT2B15	ENSG00000196620|ENST00000338206|UGT2B15	ENSG00000196620|ENST00000338206|UGT2B15	MULTI-MATCH	OvCa9_classI_Rep3	3		2	525.267173	1048.51979	-0.6757	-0.00035493	3.068	0.0016115	2.3923	0.0012566	525.2683852152189	109.52	0.47233	108.38	108.19	108.66	-1.1444	-0.096707	0.00066294	NaN	57.453	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20492			25179	8636	20602	20626							-0.0025263795532737277
KNMIHMLY	8	Unmodified	_KNMIHMLY_					0	0	0		ENSG00000196620|ENST00000338206|UGT2B15	ENSG00000196620|ENST00000338206|UGT2B15	ENSG00000196620|ENST00000338206|UGT2B15	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	525.267173	1048.51979	0.30393	0.00015964	2.1082	0.0011073	2.4121	0.001267	525.268009995666	110.06	0.47359	108.46	108.23	108.7	-1.6011	-0.0091864	-0.00034542	NaN	57.453	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20144			25180	8636	20602	20626							-0.0025263795532737277
KNMLNNAMGN	10	Unmodified	_KNMLNNAMGN_					0	0	0		tr|A0A7D6ZMH4|A0A7D6ZMH4_9CLOTNucleotidepyrophosphohydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11945PE=4SV=1	tr|A0A7D6ZMH4|A0A7D6ZMH4_9CLOTNucleotidepyrophosphohydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11945PE=4SV=1	tr|A0A7D6ZMH4|A0A7D6ZMH4_9CLOTNucleotidepyrophosphohydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11945PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.813232421875	2	553.757701	1105.50085	-0.80608	-0.00044638	-3.338	-0.0018484	-4.1441	-0.0022948	553.7559520743791	45.764	0.36657	42.725	42.543	42.909	-3.0385					9	6	2	0	0	0	0.027088	1	2363	2363		26.693	1.2427	1	12000			25181	35664	20603	20627	27992	27992					-0.047682193170430764
KNMRETLVY	9	Unmodified	_KNMRETLVY_					0	0	0		ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.322998046875	2	577.305341	1152.59613	0.99536	0.00057462	1.3974	0.00080672	2.3927	0.0013813	577.3075935493252	111.57	0.1367	111.57	111.47	111.6	0					4	2	2	0	0	0	0.027462	1	12672	12672		45.952	10.334	1	45417			25182	1685	20604	20628	27993	27993					0.025934571456446065
KNMVNVILV	9	Unmodified	_KNMVNVILV_					0	0	0		tr|A0A553SRS3|A0A553SRS3_NIACINa+/H+antiportersubunitAOS=NialliacirculansOX=1397GN=CEQ21_01800PE=3SV=1	tr|A0A553SRS3|A0A553SRS3_NIACINa+/H+antiportersubunitAOS=NialliacirculansOX=1397GN=CEQ21_01800PE=3SV=1	tr|A0A553SRS3|A0A553SRS3_NIACINa+/H+antiportersubunitAOS=NialliacirculansOX=1397GN=CEQ21_01800PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.3082885742188	2	515.309895	1028.60524	-0.74214	-0.00038243	-2.671	-0.0013764	-3.4132	-0.0017588	515.3083883346414	144.31	1.0396	142.88	142.58	143.62	-1.4357					42	19	3	0	0	0	0.52083	1	14153	14153		40.573	8.6178	1	70173			25183	34289	20605	20629	27994	27994					0.09207850501957182
KNMVNVILV	9	Unmodified	_KNMVNVILV_					0	0	0		tr|A0A553SRS3|A0A553SRS3_NIACINa+/H+antiportersubunitAOS=NialliacirculansOX=1397GN=CEQ21_01800PE=3SV=1	tr|A0A553SRS3|A0A553SRS3_NIACINa+/H+antiportersubunitAOS=NialliacirculansOX=1397GN=CEQ21_01800PE=3SV=1	tr|A0A553SRS3|A0A553SRS3_NIACINa+/H+antiportersubunitAOS=NialliacirculansOX=1397GN=CEQ21_01800PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.309895	1028.60524	-1.564	-0.00080594	-1.925	-0.00099198	-3.489	-0.0017979	515.3087111468307	142.91	0.84085	142.68	142.46	143.3	-0.22697	-0.14846	3.5497E-05	NaN	40.573	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33776			25184	34289	20605	20629							0.09207850501957182
KNMVVIFPL	9	Unmodified	_KNMVVIFPL_					0	0	0			REV__nc|ENSG00000198522|Q9HCN4-4|GPN1	REV__nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.340087890625	2	530.814813	1059.61507	0.30694	0.00016293	-4.259	-0.0022607	-3.952	-0.0020978	530.8123721680603	72.663	1.4181	72.663	72.374	73.792	0					71	35	4	0	0	0	0.027462	1	7052	7052		23.042	0	1	4526000	+		25185	23024	20606	20630	27995	27995					0.0876503850734025
KNNAEILVI	9	Unmodified	_KNNAEILVI_					0	0	0		ENST00000467551.1_1_1:151065823-151090440:+|nuORF;ENSG00000143458|ENST00000368918|GABPB2	ENST00000467551.1_1_1:151065823-151090440:+|nuORF	ENST00000467551.1_1_1:151065823-151090440:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.8136901855469	2	507.303124	1012.5917	-0.30846	-0.00015648	2.7567	0.0013985	2.4482	0.001242	507.3035017035898	95.815	0.99333	94.787	94.219	95.212	-1.0281					29	19	2	0	0	0	0.027448	1	8657	8657		44.117	0	1	63714			25186	5058	20607	20631	27996	27996					0.08590315994376851
KNNAIKKID	9	Unmodified	_KNNAIKKID_					0	0	0		tr|A0A7D7A1L7|A0A7D7A1L7_9CLOTFMN-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12905PE=4SV=1	tr|A0A7D7A1L7|A0A7D7A1L7_9CLOTFMN-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12905PE=4SV=1	tr|A0A7D7A1L7|A0A7D7A1L7_9CLOTFMN-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12905PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8021240234375	2	522.314023	1042.61349	2.1055	0.0010997	-1.6132	-0.0008426	0.49227	0.00025712	522.3127646846511	75.768	0.19337	75.768	75.68	75.874	0					8	4	2	0	0	0	0.027462	1	7577	7577		11.511	0	1	430430			25187	36042	20608	20632	27997	27997					0.0938912074293512
KNNFLVKLY	9	Unmodified	_KNNFLVKLY_					0	0	0			REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	MULTI-MSMS	OvCa9_classI_Rep2	2	569.8336181640625	2	569.834591	1137.65463	-0.84571	-0.00048192	-0.21981	-0.00012526	-1.0655	-0.00060717	569.8345191856214	98.031	6.1334	97.138	96.776	102.91	-0.89305					325	123	5	0	0	0	0.19758	1	9023	9023		76.774	10.345	1	9613600	+		25188	16668	20609	20633	27998	27998					0.09130881782425604
KNNFLVKLY	9	Unmodified	_KNNFLVKLY_					0	0	0			REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	MULTI-MSMS	OvCa9_classI_Rep3	3	569.8356323242188	2	569.834591	1137.65463	-0.6563	-0.00037398	-0.12934	-7.3703E-05	-0.78564	-0.00044768	569.8345222869018	99.284	4.3485	97.599	97.322	101.67	-1.685					272	84	6	0	0	0	0.29717	1	6840	6840		63.306	3.0123	1	12084000	+		25189	16668	20609	20633	27999	27999					0.09130881782425604
KNNFLVKLY	9	Unmodified	_KNNFLVKLY_					0	0	0			REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	MULTI-MSMS	OvCa9_classI_Rep4_	4	569.8345336914062	2	569.834591	1137.65463	-0.75134	-0.00042814	-0.049233	-2.8055E-05	-0.80058	-0.0004562	569.8345397385756	99.869	5.0637	97.543	97.212	102.28	-2.3253					291	98	6	0	0	0	0.31747	1	9086	9086		60.972	0.67798	1	9449400	+		25190	16668	20609	20633	28000	28000					0.09130881782425604
KNNFYQVPE	9	Unmodified	_KNNFYQVPE_					0	0	0			REV__nc|ENSG00000197879|O00159-2|MYO1C	REV__nc|ENSG00000197879|O00159-2|MYO1C	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.8019409179688	2	569.780013	1137.54547	1.6394	0.00093411	-3.7076	-0.0021125	-2.0682	-0.0011784	569.777681134417	92.231	0.80032	92.231	91.92	92.721	0					19	12	2	0	0	0	0.027462	1	9974	9974		31.955	0	1	295980	+		25191	22960	20610	20634	28001	28001					-0.017797489077111095
KNNIPTRSYV	10	Unmodified	_KNNIPTRSYV_					0	0	0		ENSG00000110077|ENST00000528851|MS4A6A;nc|ENSG00000110077|Q9H2W1|MS4A6A;nc|ENSG00000110077|Q9H2W1-5|MS4A6A	ENSG00000110077|ENST00000528851|MS4A6A	ENSG00000110077|ENST00000528851|MS4A6A	MULTI-MSMS	OvCa99_classI_Rep5	1	596.3297729492188	2	596.327662	1190.64077	0.4004	0.00023877	-0.70038	-0.00041766	-0.29999	-0.00017889	596.3271335367946	71.874	0.53918	71.874	71.668	72.208	0					22	12	2	0	0	0	0.55109	1	6974	6974		47.96	6.5329	1	1490400			25192	2756	20611	20635	28002	28002					0.053076042833026804
KNNKINVV	8	Unmodified	_KNNKINVV_					0	0	0		tr|A0A7D6VRS1|A0A7D6VRS1_9CLOTFeMocofactorbiosynthesisproteinNifBOS=ClostridiumintestinaleOX=36845GN=nifBPE=3SV=1	tr|A0A7D6VRS1|A0A7D6VRS1_9CLOTFeMocofactorbiosynthesisproteinNifBOS=ClostridiumintestinaleOX=36845GN=nifBPE=3SV=1	tr|A0A7D6VRS1|A0A7D6VRS1_9CLOTFeMocofactorbiosynthesisproteinNifBOS=ClostridiumintestinaleOX=36845GN=nifBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.7674560546875	2	464.782359	927.550165	-0.051066	-2.3735E-05	-1.0432	-0.00048485	-1.0942	-0.00050858	464.7820271817921	43.122	0.38704	43.122	42.883	43.27	0					12	8	2	0	0	0	0.028476	1	2794	2794		31.955	0	1	62483			25193	34952	20612	20636	28003	28003					0.08349180025697933
KNNKKKKRRRF	11	Unmodified	_KNNKKKKRRRF_					0	0	0			REV__L1M2_dup9102|chr21:15781465-15783675:+|1.9878716944661228|0.1805436335784144|3.46|428.0|62|3|sense	REV__L1M2_dup9102|chr21:15781465-15783675:+|1.9878716944661228|0.1805436335784144|3.46|428.0|62|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.2825012207031	3	501.654937	1501.94298	-0.76106	-0.00038179	-0.37633	-0.00018879	-1.1374	-0.00057058	501.9891992317971	68.147	0.44337	68.147	67.955	68.398	0					20	10	3	0	0	0	0.026435	1	6450	6450		9.6461	1.6118	1	300190	+		25194	28358	20613	20637	28004	28004					0.21208789813158546
KNNKLLDIIP	10	Unmodified	_KNNKLLDIIP_					0	0	0			REV__tr|A0A7D6VT78|A0A7D6VT78_9CLOT4Fe-4SbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01775PE=4SV=1	REV__tr|A0A7D6VT78|A0A7D6VT78_9CLOT4Fe-4SbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01775PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3576049804688	2	584.358431	1166.70231	-0.5033	-0.0002941	-2.654	-0.0015509	-3.1573	-0.001845	584.3567763295431	142.42	4.015	140.98	138.81	142.83	-1.4427					242	77	4	0	0	0	0.67931	1	13754	13754		32.812	1.2826	1	214670	+		25195	31578	20614	20638	28005	28005					0.1256253598260173
KNNLEILNEKM	11	Unmodified	_KNNLEILNEKM_					0	0	0		ENSG00000198707|ENST00000552810|CEP290	ENSG00000198707|ENST00000552810|CEP290	ENSG00000198707|ENST00000552810|CEP290	MULTI-SECPEP	OvCa99_classI_Rep5	1	449.73529052734375	3	449.242988	1344.70714	-0.23626	-0.00010614	-1.9732	-0.00088647	-2.2095	-0.0009926	449.242043963843	35.028	0.5674	35.028	34.772	35.339	0					23	11	3	0	0	0	0.025404	1	1714	1714		32.034	0.96598	1	94922			25196	8851	20615	20639	28006	28006					0.04857052063039191
KNNLTLDQPQ	10	Unmodified	_KNNLTLDQPQ_					0	0	0		ENSG00000136560|ENST00000392749|TANK;nc|ENSG00000136560|Q92844-2|TANK;nc|ENSG00000136560|Q92844-3|TANK	ENSG00000136560|ENST00000392749|TANK	ENSG00000136560|ENST00000392749|TANK	MULTI-MSMS	OvCa99_classI_Rep5	1	585.8128051757812	2	585.809302	1169.60405	1.7265	0.0010114	0.58287	0.00034145	2.3094	0.0013528	585.8102019200584	133.66	1.9611	133.66	133.35	135.31	0					87	42	4	0	0	0	0.47142	1	15519	15519		58.23	0	1	640670			25197	4499	20616	20640	28007	28007					0.026033076667545174
KNNNLSKIL	9	Unmodified	_KNNNLSKIL_					0	0	0			REV__tr|A0A7D6VUT7|A0A7D6VUT7_9CLOTHDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08355PE=4SV=1	REV__tr|A0A7D6VUT7|A0A7D6VUT7_9CLOTHDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08355PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.3104858398438	2	522.314023	1042.61349	-1.2377	-0.00064647	3.3182	0.0017331	2.0804	0.0010866	522.315765679682	53.417	1.0221	50.209	49.893	50.915	-3.208					36	19	3	0	0	0	0.027173	1	3296	3296		129.68	21.595	1	91192	+		25198	31694	20617	20641	28008	28008					0.0938912074293512
KNNNLSKIL	9	Unmodified	_KNNNLSKIL_					0	0	0			REV__tr|A0A7D6VUT7|A0A7D6VUT7_9CLOTHDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08355PE=4SV=1	REV__tr|A0A7D6VUT7|A0A7D6VUT7_9CLOTHDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08355PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	522.314023	1042.61349	-0.82909	-0.00043305	1.6433	0.00085834	0.81426	0.0004253	522.3142167830594	53.033	0.59068	50.219	49.739	50.33	-2.8139	0.0053151	-0.00057218	NaN	129.68	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31031	+		25199	31694	20617	20641							0.0938912074293512
KNNRRKSF	8	Unmodified	_KNNRRKSF_					0	0	0		ENSG00000170324|ENST00000374201|FRMPD2;nc|ENSG00000170324|Q68DX3-2|FRMPD2;ENST00000486151.5_1_10:49386068-49414901:-|nuORF	ENSG00000170324|ENST00000374201|FRMPD2	ENSG00000170324|ENST00000374201|FRMPD2	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.7837524414062	2	525.301781	1048.58901	-0.79032	-0.00041516	3.1957	0.0016787	2.4054	0.0012635	525.3034714230002	102.7	1.779	101.17	100.32	102.1	-1.5211					62	33	3	0	0	0	0.028476	1	7034	7034		31.955	0	1	324150			25200	7094	20618	20642	28009	28009					0.06665905380077675
KNNRVRNL	8	Unmodified	_KNNRVRNL_					0	0	0			REV__sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1	REV__sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.84295654296875	2	507.301781	1012.58901	3.0945	0.0015698	0.99025	0.00050236	4.0847	0.0020722	507.3025741819245	88.579	0.8545	88.579	88.298	89.153	0					34	20	3	0	0	0	0.028476	1	9402	9402		50.025	10.772	1	1012000	+		25201	29418	20619	20643	28010	28010					0.08321905380091721
KNNVFKSE	8	Unmodified	_KNNVFKSE_					0	0	0		ENSG00000213079|ENST00000367178|SCAF8;nc|ENSG00000213079|Q9UPN6-2|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.7779541015625	2	483.256174	964.497795	0.1621	7.8337E-05	-0.085369	-4.1255E-05	0.076733	3.7082E-05	483.2560667961179	62.731	0.43915	62.731	62.501	62.94	0					22	10	3	0	0	0	0.028476	1	5570	5570		24.203	10.427	1	1172700			25202	9116	20620	20644	28011	28011					0.01412596892100737
KNNVLCII	8	Unmodified	_KNNVLCII_					0	0	0			REV__ENSG00000178690|ENST00000648945|DYNAP	REV__ENSG00000178690|ENST00000648945|DYNAP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.2856750488281	2	458.767863	915.521173	-0.75743	-0.00034748	-3.5326	-0.0016206	-4.29	-0.0019681	458.76616656332106	94.996	0.70174	92.528	92.21	92.912	-2.4685					24	13	3	0	0	0	0.028476	1	8320	8320		35.201	6.9464	1	37942	+		25203	22070	20621	20645	28012	28012					0.06003319405044749
KNNVLLYF	8	Unmodified	_KNNVLLYF_					0	0	0			REV__ENSG00000197769|ENST00000357246|MAP1LC3C	REV__ENSG00000197769|ENST00000357246|MAP1LC3C	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.2738952636719	2	505.78711	1009.55967	-1.5329	-0.00077534	-2.8155	-0.001424	-4.3484	-0.0021994	505.7855396372585	53.1	1.4365	50.286	49.788	51.225	-2.8139					53	28	2	0	0	0	0.028476	1	3684	3684		8.8223	0	1	125520	+		25204	22949	20622	20646	28013	28013					0.055269483112283524
KNNVVVFNL	9	Unmodified	_KNNVVVFNL_					0	0	0		ENST00000380916.8_1_9:14611214-14611316:-|nuORF	ENST00000380916.8_1_9:14611214-14611316:-|nuORF	ENST00000380916.8_1_9:14611214-14611316:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.2822265625	2	523.803291	1045.59203	-0.52666	-0.00027587	3.8548	0.0020191	3.3281	0.0017433	523.8056693083896	73.49	0.3215	73.49	73.276	73.597	0					10	7	2	0	0	0	0.027462	1	7186	7186		21.96	0	1	205970			25205	11155	20623	20647	28014	28014					0.07105735714230832
KNNYCLQIN	9	Unmodified	_KNNYCLQIN_					0	0	0		ENST00000518683.5_1_8:87410815-87460532:+|nuORF;nc|ENSG00000123124|Q9H0M0-6|WWP1;nc|ENSG00000123124|Q9H0M0-3|WWP1;ENSG00000123124|ENST00000517970|WWP1;nc|ENSG00000198373|O00308-3|WWP2;WWP2|p.H601Pfs*8|1|0.44|ENSG00000198373|chr16:69934089-69934089|A/-|frameshift_variant;nc|ENSG00000198373|O00308-2|WWP2;NFAT5-WWP2|1|fusion;NFAT5-WWP2|3|fusion;ENSG00000198373|ENST00000359154|WWP2	ENST00000518683.5_1_8:87410815-87460532:+|nuORF	ENST00000518683.5_1_8:87410815-87460532:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.812255859375	2	555.274041	1108.53353	-0.58245	-0.00032342	4.3526	0.0024169	3.7701	0.0020935	555.2758748488192	100.81	0.20605	98.54	98.446	98.652	-2.2665					5	3	2	0	0	0	0.027462	1	9029	9029		23.042	13.337	1	5626.4			25206	3573	20624	20648	28015	28015					-0.016396889225461564
KNPAGMKILQ	10	Unmodified	_KNPAGMKILQ_					0	0	0		ENST00000261250.7_1_12:4639143-4639203:-|nuORF	ENST00000261250.7_1_12:4639143-4639203:-|nuORF	ENST00000261250.7_1_12:4639143-4639203:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3092651367188	2	550.318251	1098.62195	-2.6466	-0.0014565	-0.97196	-0.00053489	-3.6185	-0.0019913	550.3178271589588	104.23	0.60094	104.23	103.94	104.54	0					22	13	2	0	0	0	0.026659	1	11674	11674		54.776	14.204	1	428430			25207	9859	20625	20649	28016	28016					0.07658351387908624
KNPEHVKTF	9	Unmodified	_KNPEHVKTF_					0	0	0		nc|ENSG00000223519|B7ZC32|KIF28P	nc|ENSG00000223519|B7ZC32|KIF28P	nc|ENSG00000223519|B7ZC32|KIF28P	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.272216796875	2	550.298373	1098.58219	-0.027675	-1.523E-05	-2.2849	-0.0012574	-2.3126	-0.0012726	550.2969762810432	56.537	0.96253	53.243	52.92	53.883	-3.2944					27	18	2	0	0	0	0.027402	1	3586	3586		39.253	0	1	19813			25208	15321	20626	20650	28017	28017					0.03684547708826358
KNPFIPISL	9	Unmodified	_KNPFIPISL_					0	0	0		tr|A0A553SLQ1|A0A553SLQ1_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_21030PE=4SV=1	tr|A0A553SLQ1|A0A553SLQ1_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_21030PE=4SV=1	tr|A0A553SLQ1|A0A553SLQ1_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_21030PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.8003540039062	2	514.810585	1027.60662	-0.032679	-1.6823E-05	1.2831	0.00066056	1.2504	0.00064374	514.8120335439178	88.303	1.6017	86.172	85.442	87.044	-2.1309					67	31	4	0	0	0	0.027462	1	5347	5347		35.618	0	1	266760			25209	33751	20627	20651	28018	28018					0.0939180786238012
KNPGQTCEQL	10	Unmodified	_KNPGQTCEQL_					0	0	0		ENSG00000115232|ENST00000397033|ITGA4;ENST00000478440.1_1_2:182322968-182343489:+|nuORF;ENST00000484404.1_1_2:182322441-182339919:+|nuORF;nc|ENSG00000115232|P13612-2|ITGA4;ENST00000476089.1_1_2:182321937-182323202:+|nuORF;ENST00000465522.5_1_2:182322141-182350724:+|nuORF	ENSG00000115232|ENST00000397033|ITGA4	ENSG00000115232|ENST00000397033|ITGA4	MULTI-MSMS	OvCa9_classI_Rep2	2	559.2689819335938	2	559.268955	1116.52336	1.4523	0.00081223	-1.4973	-0.0008374	-0.044998	-2.5166E-05	559.2678795169845	42.253	1.5792	39.544	39.029	40.608	-2.7097					58	31	3	0	0	0	0.58067	1	2275	2275		44.377	1.981	1	102740			25210	3072	20628	20652	28019	28019					-0.030242966477771915
KNPIRIIL	8	Unmodified	_KNPIRIIL_					0	0	0		tr|A0A553SQ19|A0A553SQ19_NIACIRiboflavinbiosynthesisproteinRibDOS=NialliacirculansOX=1397GN=ribDPE=3SV=1	tr|A0A553SQ19|A0A553SQ19_NIACIRiboflavinbiosynthesisproteinRibDOS=NialliacirculansOX=1397GN=ribDPE=3SV=1	tr|A0A553SQ19|A0A553SQ19_NIACIRiboflavinbiosynthesisproteinRibDOS=NialliacirculansOX=1397GN=ribDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	483.8258972167969	2	483.826569	965.638586	-0.60225	-0.00029139	0.18575	8.987E-05	-0.41651	-0.00020152	483.82654204477944	76.923	1.8627	75.133	74.894	76.757	-1.7894					84	35	4	0	0	0	0.71369	1	6391	6391		40.573	0	1	705570			25211	34107	20629	20653	28020	28020					0.1543922033616809
KNPLQRFE	8	Unmodified	_KNPLQRFE_					0	0	0			REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9	REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.2866821289062	2	516.285266	1030.55598	-0.34066	-0.00017588	-0.66167	-0.00034161	-1.0023	-0.00051749	516.2849649091515	58.068	1.5558	54.723	54.444	56	-3.3449					55	30	2	0	0	0	0.57734	1	3819	3819		68.787	1.2932	1	1003400	+		25212	17178	20630	20654	28021	28021					0.04192278537357197
KNPPLVLTQ	9	Unmodified	_KNPPLVLTQ_					0	0	0			REV__ENSG00000079432|ENST00000681038|CIC	REV__ENSG00000079432|ENST00000681038|CIC	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.2597961425781	2	505.305667	1008.59678	-0.76135	-0.00038472	0.1731	8.7467E-05	-0.58826	-0.00029725	505.30570275529755	80.748	2.2248	78.425	78.081	80.305	-2.3226					122	43	4	0	0	0	0.027455	1	4423	4423		42.396	16.946	1	514660	+		25213	17043	20631	20655	28022	28022					0.09282619856969632
KNPQRPVPQ	9	Unmodified	_KNPQRPVPQ_					0	0	0			REV__nc|ENSG00000184788|Q86VE3-2|SATL1	REV__nc|ENSG00000184788|Q86VE3-2|SATL1	MULTI-SECPEP	OvCa9_classI_Rep3	3	533.2830810546875	2	532.30399	1062.59343	-1.0219	-0.00054395	-3.7171	-0.0019786	-4.739	-0.0025226	532.3023045762443	92.845	0.81024	90.884	90.468	91.279	-1.9617					36	16	3	0	0	0	0.027455	1	5940	5940		34.173	2.5937	1	140820	+		25214	22449	20632	20656	28023	28023					0.06463369802986563
KNPVFSVVV	9	Unmodified	_KNPVFSVVV_					0	0	0		ENST00000376717.6_3_9:79227295-79227583:-|nuORF	ENST00000376717.6_3_9:79227295-79227583:-|nuORF	ENST00000376717.6_3_9:79227295-79227583:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.7767028808594	2	494.794935	987.575317	-0.86748	-0.00042922	-2.5365	-0.001255	-3.404	-0.0016843	494.7935279104344	50.946	0.20157	47.773	47.671	47.872	-3.1734					5	3	2	0	0	0	0.027462	1	2961	2961		55.504	11.387	1	9478.2			25215	11077	20633	20657	28024	28024					0.08103234828286077
KNPYGGPK	8	Unmodified	_KNPYGGPK_					0	0	0			REV__ENST00000456732.2_10:48190054-48195746:+|nuORF	REV__ENST00000456732.2_10:48190054-48195746:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	429.8862609863281	2	430.734877	859.455202	-0.34581	-0.00014895	-4.1999	-0.001809	-4.5457	-0.001958	430.7330615007081	35.259	0.23897	35.259	35.1	35.339	0					7	4	2	0	0	0	0.028476	1	1747	1747		18.324	2.6826	1	41874	+		25216	26033	20634	20658	28025	28025					0.01985246554522746
KNPYITKVL	9	Unmodified	_KNPYITKVL_					0	0	0		tr|A0A7D6VSR3|A0A7D6VSR3_9CLOTAdenylosuccinatesynthetaseOS=ClostridiumintestinaleOX=36845GN=purAPE=3SV=1	tr|A0A7D6VSR3|A0A7D6VSR3_9CLOTAdenylosuccinatesynthetaseOS=ClostridiumintestinaleOX=36845GN=purAPE=3SV=1	tr|A0A7D6VSR3|A0A7D6VSR3_9CLOTAdenylosuccinatesynthetaseOS=ClostridiumintestinaleOX=36845GN=purAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	538.8275756835938	2	538.329142	1074.64373	-5.5921	-0.0030104	1.7538	0.0009441	-3.8384	-0.0020663	538.3299819955096	158.56	1.0599	158.33	158.09	159.15	-0.22697					66	21	5	0	0	0	0.69123	1	16090	16090		20.947	1.8434	1	327100			25217	35050	20635	20659	28026	28026					0.10939479408125408
KNPYLKATE	9	Unmodified	_KNPYLKATE_					0	0	0		tr|A0A553STE2|A0A553STE2_NIACIGlycosidehydrolasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_04895PE=3SV=1	tr|A0A553STE2|A0A553STE2_NIACIGlycosidehydrolasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_04895PE=3SV=1	tr|A0A553STE2|A0A553STE2_NIACIGlycosidehydrolasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_04895PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.8103637695312	2	532.292756	1062.57096	1.9453	0.0010355	0.035975	1.9149E-05	1.9812	0.0010546	532.2926232892419	108.57	1.347	108.57	108.16	109.5	0					68	30	3	0	0	0	0.027462	1	12233	12233		27.882	0	1	1320300			25218	34478	20636	20660	28027	28027					0.04217725614716983
KNQAKLIEF	9	Unmodified	_KNQAKLIEF_					0	0	0		ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	ENSG00000135932|ENST00000258418|CAB39	MULTI-SECPEP	OvCa9_classI_Rep3	3	546.80029296875	2	545.816399	1089.61824	0.9717	0.00053037	-1.309	-0.00071448	-0.33731	-0.00018411	545.8155944914055	121.32	1.3083	120.3	119.86	121.16	-1.0271					69	24	4	0	0	0	0.027462	1	9256	9256		47.657	10.498	1	234540			25219	4435	20637	20661	28028	28028					0.07702004885709357
KNQDRYVL	8	Unmodified	_KNQDRYVL_					0	0	0			REV__ENSG00000126214|ENST00000334553|KLC1	REV__ENSG00000126214|ENST00000334553|KLC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.2549438476562	2	518.282723	1034.55089	-1.1951	-0.00061938	0.61696	0.00031976	-0.5781	-0.00029962	518.2829629552638	49.656	0.48159	49.656	49.418	49.899	0					14	10	2	0	0	0	0.028476	1	3702	3702		66.429	11.653	1	217730	+		25220	18774	20638	20662	28029	28029					0.03499974674764417
KNQEKKLDE	9	Unmodified	_KNQEKKLDE_					0	0	0			REV__ENSG00000091844|ENST00000206262|RGS17	REV__ENSG00000091844|ENST00000206262|RGS17	MULTI-MSMS	OvCa9_classI_Rep2	2	566.3040161132812	2	566.303852	1130.59315	-1.6717	-0.0009467	0.7735	0.00043804	-0.89822	-0.00050867	566.304456990032	38.168	0.84065	35.458	35.271	36.112	-2.7097					32	16	3	0	0	0	0.38969	1	1771	1771		52.937	1.744	1	68343	+		25221	17257	20639	20663	28030	28030					0.033079052924676944
KNQELRSLI	9	Unmodified	_KNQELRSLI_					0	0	0		ENSG00000088538|ENST00000266037|DOCK3	ENSG00000088538|ENST00000266037|DOCK3	ENSG00000088538|ENST00000266037|DOCK3	MULTI-MSMS	OvCa99_classI_Rep5	1	550.3200073242188	2	550.824755	1099.63496	2.2318	0.0012293	4.1938	0.0023101	6.4257	0.0035394	550.8268559999206	86.159	0.72221	86.159	85.83	86.553	0					30	12	3	0	0	0	0.3249	1	9056	9056		60.118	6.7668	1	1719600			25222	1791	20640	20664	28031	28031					0.0891250577167284
KNQFLSFAY	9	Unmodified	_KNQFLSFAY_					0	0	0			REV__ENST00000465713.5_1_2:219472784-219498591:+|nuORF	REV__ENST00000465713.5_1_2:219472784-219498591:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.286376953125	2	559.287474	1116.5604	1.6773	0.00093807	-3.3543	-0.001876	-1.677	-0.00093792	559.2853993749533	33.558	2.4419	30.77	30.259	32.701	-2.7881					125	48	3	0	0	0	0.65476	1	910	910		25.45	1.2474	1	122450	+		25223	26175	20641	20665	28032	28032					0.006777429603062046
KNQGEGQRKQ	10	Unmodified	_KNQGEGQRKQ_					0	0	0		ENST00000563842.5_3_15:74916655-74918160:+|nuORF	ENST00000563842.5_3_15:74916655-74918160:+|nuORF	ENST00000563842.5_3_15:74916655-74918160:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.767578125	2	586.810168	1171.60578	1.5796	0.00092693	-1.6273	-0.00095492	-0.047692	-2.7986E-05	586.8088743862652	125.33	1.0367	125.33	125.14	126.18	0					31	24	2	0	0	0	0.026942	1	14558	14558		40.058	13.365	1	51200			25224	13792	20642	20666	28033	28033					0.026843614753715883
KNQGLKKN	8	Unmodified	_KNQGLKKN_					0	0	0			REV__nc|ENSG00000169905|Q9H496|TOR1AIP2	REV__nc|ENSG00000169905|Q9H496|TOR1AIP2	MULTI-MSMS	OvCa9_classI_Rep3	3	465.2795104980469	2	465.279983	928.545414	-2.2481	-0.001046	1.8834	0.00087632	-0.36466	-0.00016967	465.28073984197977	140.54	1.2277	139.51	139.24	140.46	-1.0339					42	24	2	0	0	0	0.75661	1	11581	11581		19.36	0	1	53002	+		25225	28997	20643	20667	28034	28034					0.07828295882939074
KNQILTNRI	9	Unmodified	_KNQILTNRI_					0	0	0		tr|A0A7D6W0P3|A0A7D6W0P3_9CLOTDNApolymeraseIIIsubunitgamma/tauOS=ClostridiumintestinaleOX=36845GN=dnaXPE=3SV=1	tr|A0A7D6W0P3|A0A7D6W0P3_9CLOTDNApolymeraseIIIsubunitgamma/tauOS=ClostridiumintestinaleOX=36845GN=dnaXPE=3SV=1	tr|A0A7D6W0P3|A0A7D6W0P3_9CLOTDNApolymeraseIIIsubunitgamma/tauOS=ClostridiumintestinaleOX=36845GN=dnaXPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.290283203125	2	550.332747	1098.65094	-0.76151	-0.00041908	-0.31288	-0.00017219	-1.0744	-0.00059127	550.3326641660153	65.615	0.72794	62.129	61.889	62.617	-3.4854					20	14	2	0	0	0	0.027462	1	4735	4735		29.15	0	1	42854			25226	35383	20644	20668	28035	28035					0.10556212008555121
KNQKSFVFI	9	Unmodified	_KNQKSFVFI_					0	0	0		ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	ENSG00000197943|ENST00000564138|PLCG2	MULTI-SECPEP	OvCa9_classI_Rep2	2	554.823486328125	2	555.818941	1109.62333	-0.26519	-0.0001474	-0.14746	-8.196E-05	-0.41265	-0.00022936	555.8185479448828	100.31	0.8927	99.482	99.014	99.906	-0.83051					24	17	2	0	0	0	0.027462	1	9198	9198		12.959	0	1	58998			25227	8765	20645	20669	28036	28036					0.0729030874831551
KNQLLVYPE	9	Unmodified	_KNQLLVYPE_					0	0	0			REV__nc|ENSG00000125257|O15439-2|ABCC4	REV__nc|ENSG00000125257|O15439-2|ABCC4	MULTI-SECPEP	OvCa9_classI_Rep2	2	553.2849731445312	2	552.308406	1102.60226	0.83411	0.00046069	-0.38102	-0.00021044	0.45309	0.00025024	552.3083812726596	109.18	0.74152	108.97	108.68	109.42	-0.21					26	14	3	0	0	0	0.027402	1	10219	10219		66.429	0	1	35550	+		25228	18716	20646	20670	28037	28037					0.05506298648788288
KNQLLVYPE	9	Unmodified	_KNQLLVYPE_					0	0	0			REV__nc|ENSG00000125257|O15439-2|ABCC4	REV__nc|ENSG00000125257|O15439-2|ABCC4	MULTI-MATCH	OvCa99_classI_Rep5	1		2	552.308406	1102.60226	1.4951	0.00082574	-0.67453	-0.00037255	0.82054	0.00045319	552.3082056294721	109.08	0.34859	109.08	108.8	109.15	0	0.11544	-0.00060248	NaN	66.429	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	264390	+		25229	18716	20646	20670							0.05506298648788288
KNQLNQEQP	9	Unmodified	_KNQLNQEQP_					0	0	0			REV__ENST00000483685.5_1_2:219487553-219498591:+|nuORF	REV__ENST00000483685.5_1_2:219487553-219498591:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.8301391601562	2	549.780544	1097.54654	0.1673	9.1976E-05	4.0509	0.0022271	4.2182	0.0023191	549.7826843731158	83.988	0.38996	81.325	81.022	81.412	-2.6629					11	7	2	0	0	0	0.027426	1	6989	6989		63.306	9.9548	1	20359	+		25230	18253	20647	20671	28038	28038					0.0016646546121137362
KNQRGLLTPS	10	Unmodified	_KNQRGLLTPS_					0	0	0		ENST00000566196.5_1_16:8896110-8896212:+|nuORF	ENST00000566196.5_1_16:8896110-8896212:+|nuORF	ENST00000566196.5_1_16:8896110-8896212:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.309326171875	2	557.32238	1112.63021	-0.20751	-0.00011565	1.0485	0.00058433	0.84096	0.00046868	557.3225470935205	38.278	0.6812	38.278	38.069	38.75	0					19	14	2	0	0	0	0.026523	1	2200	2200		71.877	25.421	1	148910			25231	13840	20648	20672	28039	28039					0.07839621628886562
KNQRIFNSL	9	Unmodified	_KNQRIFNSL_					0	0	0			REV__ENST00000313984.3_1_1:235643413-235647714:-|nuORF	REV__ENST00000313984.3_1_1:235643413-235647714:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	560.330078125	2	560.317097	1118.61964	-0.67539	-0.00037843	0.28384	0.00015904	-0.39155	-0.00021939	560.3171237260614	74.324	1.5248	71.913	71.548	73.073	-2.4106					80	30	5	0	0	0	0.027462	1	3637	3637		32.812	0	1	333220	+		25232	24376	20649	20673	28040	28040					0.06507638974471774
KNQRRREE	8	Unmodified	_KNQRRREE_					0	0	0			REV__ENSG00000168389|ENST00000372811|MFSD2A;REV__ENSG00000166260|ENST00000299335|COX11	REV__ENSG00000168389|ENST00000372811|MFSD2A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.2523193359375	2	558.305052	1114.59555	1.5181	0.00084759	-1.5465	-0.00086344	-0.028397	-1.5854E-05	558.3044244709611	67.168	1.184	63.677	63.198	64.381	-3.4902					55	23	3	0	0	0	0.028476	1	4927	4927		42.396	11.892	1	442150	+		25233	21370;21170	20650	20674	28041	28041					0.04283798540814132
KNQSASSTGAL	11	Unmodified	_KNQSASSTGAL_					0	0	0		ENSG00000170613|ENST00000302938|GARIN3	ENSG00000170613|ENST00000302938|GARIN3	ENSG00000170613|ENST00000302938|GARIN3	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.273681640625	2	532.272552	1062.53055	-2.0581	-0.0010955	1.7432	0.00092787	-0.31491	-0.00016762	532.2733959453928	44.524	0.9715	41.485	41.258	42.23	-3.0385					44	18	3	0	0	0	0.50761	1	2218	2218		53.089	5.4316	1	300760			25234	7124	20651	20675	28042	28042					0.0017875922428629565
KNQSASSTGAL	11	Unmodified	_KNQSASSTGAL_					0	0	0		ENSG00000170613|ENST00000302938|GARIN3	ENSG00000170613|ENST00000302938|GARIN3	ENSG00000170613|ENST00000302938|GARIN3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	532.272552	1062.53055	-0.77352	-0.00041172	0.45171	0.00024043	-0.32181	-0.00017129	532.2726858075779	44.492	0.84515	41.782	41.552	42.398	-2.7097	0.14819	-0.000846	NaN	53.089	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39024			25235	7124	20651	20675							0.0017875922428629565
KNQSSRHL	8	Unmodified	_KNQSSRHL_					0	0	0		nc|ENSG00000165555|Q6NXP6-2|NOXRED1;ENSG00000165555|ENST00000380835|NOXRED1	nc|ENSG00000165555|Q6NXP6-2|NOXRED1	nc|ENSG00000165555|Q6NXP6-2|NOXRED1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.3147888183594	2	485.264865	968.515176	-0.5767	-0.00027985	3.8939	0.0018896	3.3172	0.0016097	485.2663378259856	65.504	1.1141	62.018	61.647	62.761	-3.4854					40	22	2	0	0	0	0.028476	1	4677	4677		25.574	0.12388	1	138860			25236	6577	20652	20676	28043	28043					0.02965937217766168
KNQSSRHL	8	Unmodified	_KNQSSRHL_					0	0	0		nc|ENSG00000165555|Q6NXP6-2|NOXRED1;ENSG00000165555|ENST00000380835|NOXRED1	nc|ENSG00000165555|Q6NXP6-2|NOXRED1	nc|ENSG00000165555|Q6NXP6-2|NOXRED1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	485.264865	968.515176	0.39201	0.00019023	3.5035	0.0017001	3.8955	0.0018903	485.2661128768897	64.905	0.93392	62.18	61.758	62.691	-2.7246	0.080899	-0.00019979	NaN	32.812	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31325			25237	6577	20652	20676							0.02965937217766168
KNQYIKSLI	9	Unmodified	_KNQYIKSLI_					0	0	0			REV__tr|A0A553SLN1|A0A553SLN1_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_20980PE=4SV=1	REV__tr|A0A553SLN1|A0A553SLN1_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_20980PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	553.831298828125	2	553.832049	1105.64954	-2.2198	-0.0012294	-1.4062	-0.0007788	-3.626	-0.0020082	553.8311075714116	139.08	3.9663	138.02	135.98	139.95	-1.0595					202	80	4	0	0	0	0.46377	1	11360	11360		45.952	5.1738	1	74733	+		25238	30242	20653	20677	28044	28044					0.10094577919812764
KNRAIIQEV	9	Unmodified	_KNRAIIQEV_					0	0	0		ENSG00000178950|ENST00000314167|GAK;ENST00000513935.1_1_4:906456-925975:-|nuORF	ENSG00000178950|ENST00000314167|GAK	ENSG00000178950|ENST00000314167|GAK	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.7991333007812	2	535.819473	1069.62439	-0.80365	-0.00043061	1.1133	0.00059653	0.30966	0.00016592	535.8199993499903	78.581	0.75148	75.83	75.619	76.37	-2.7514					24	15	2	0	0	0	0.027411	1	6341	6341		64.207	9.431	1	72702			25239	7785	20654	20678	28045	28045					0.09236523117237994
KNRAYAIFF	9	Unmodified	_KNRAYAIFF_					0	0	0		ENST00000535009.5_1_11:68816453-68846494:+|nuORF;ENST00000442692.2_1_11:68822646-68853210:+|nuORF;ENSG00000162341|ENST00000294309|TPCN2	ENST00000535009.5_1_11:68816453-68846494:+|nuORF	ENST00000535009.5_1_11:68816453-68846494:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.781005859375	2	565.311284	1128.60801	0.23166	0.00013096	-3.7382	-0.0021132	-3.5065	-0.0019823	565.3091439285018	47.053	0.79119	47.053	46.631	47.422	0					28	17	3	0	0	0	0.027462	1	3367	3367		24.203	0	1	151880			25240	6170	20655	20679	28046	28046					0.04885441951114444
KNRELKLRE	9	Unmodified	_KNRELKLRE_					0	0	0			REV__nc|ENSG00000104218|Q1MSJ5-1|CSPP1	REV__nc|ENSG00000104218|Q1MSJ5-1|CSPP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.8182373046875	2	593.356754	1184.69895	-0.90353	-0.00053612	0.37408	0.00022196	-0.52945	-0.00031415	593.356967109429	27.717	0.89767	27.717	27.542	28.439	0					46	17	5	0	0	0	0.027462	1	923	923		37.159	0	1	1486600	+		25241	17651	20656	20680	28047	28047					0.11399285928564495
KNRIKLNN	8	Unmodified	_KNRIKLNN_					0	0	0		tr|A0A7D6ZJA0|A0A7D6ZJA0_9CLOTTetratricopeptiderepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07915PE=4SV=1	tr|A0A7D6ZJA0|A0A7D6ZJA0_9CLOTTetratricopeptiderepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07915PE=4SV=1	tr|A0A7D6ZJA0|A0A7D6ZJA0_9CLOTTetratricopeptiderepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07915PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	499.7525329589844	2	500.306532	998.598512	-0.33789	-0.00016905	-4.4612	-0.0022319	-4.799	-0.002401	500.30421650732313	97.292	1.9619	96.334	95.53	97.492	-0.95857					83	39	4	0	0	0	0.028476	1	8761	8761		35.201	1.6851	1	365140			25242	35638	20657	20681	28048	28048					0.09915673665602753
KNRILNSL	8	Unmodified	_KNRILNSL_					0	0	0		RICTOR|p.L1512Tfs*4|1|0.3|ENSG00000164327|chr5:38945587-38945594|GTAGTCCA/-|frameshift_variant;ENSG00000164327|ENST00000357387|RICTOR;nc|ENSG00000164327|Q6R327-3|RICTOR	RICTOR|p.L1512Tfs*4|1|0.3|ENSG00000164327|chr5:38945587-38945594|GTAGTCCA/-|frameshift_variant	RICTOR|p.L1512Tfs*4|1|0.3|ENSG00000164327|chr5:38945587-38945594|GTAGTCCA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	479.29730224609375	2	479.295633	956.576714	-0.26237	-0.00012575	4.2577	0.0020407	3.9954	0.001915	479.29752817551383	116.42	1.3352	115.38	115	116.33	-1.0414					70	26	3	0	0	0	0.66704	1	8705	8705		50.025	2.1089	1	529340			25243	6447	20658	20682	28049	28049					0.09668868917037798
KNRLVNIMP	9	Unmodified	_KNRLVNIMP_					0	0	0		nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD;nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-7|PTPRD;nc|ENSG00000153707|P23468-5|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-6|PTPRD;ENST00000477970.1_1_1:44078891-44086093:+|nuORF;nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000105426|Q13332-5|PTPRS;ENST00000588552.5_1_19:5159112-5286160:-|nuORF;nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS;nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF	nc|ENSG00000153707|P23468-2|PTPRD;nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000142949|P10586-2|PTPRF	nc|ENSG00000153707|P23468-2|PTPRD	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.8128662109375	2	542.818418	1083.62228	-2.0842	-0.0011313	-2.6552	-0.0014413	-4.7393	-0.0025726	542.8169069829659	127.08	0.84283	125.65	125.39	126.24	-1.4357					23	16	2	0	0	0	0.52083	1	12110	12110		40.573	8.6178	1	29905			25244	5688;2457;5003	20659	20683	28050	28050					0.08381771107792702
KNRLVNIMP	9	Unmodified	_KNRLVNIMP_					0	0	0		nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD;nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-7|PTPRD;nc|ENSG00000153707|P23468-5|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-6|PTPRD;ENST00000477970.1_1_1:44078891-44086093:+|nuORF;nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000105426|Q13332-5|PTPRS;ENST00000588552.5_1_19:5159112-5286160:-|nuORF;nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS;nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF	nc|ENSG00000153707|P23468-2|PTPRD;nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000142949|P10586-2|PTPRF	nc|ENSG00000153707|P23468-2|PTPRD	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.818418	1083.62228	0.16476	8.9432E-05	-4.1639	-0.0022602	-3.9991	-0.0021708	542.8156909982081	126.06	0.59034	125.83	125.6	126.19	-0.2359	0.11282	-0.00069271	NaN	40.573	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37465			25245	5688;2457;5003	20659	20683							0.08381771107792702
KNRLVNIMP	9	Unmodified	_KNRLVNIMP_					0	0	0		nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD;nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-7|PTPRD;nc|ENSG00000153707|P23468-5|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-6|PTPRD;ENST00000477970.1_1_1:44078891-44086093:+|nuORF;nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000105426|Q13332-5|PTPRS;ENST00000588552.5_1_19:5159112-5286160:-|nuORF;nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS;nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF	nc|ENSG00000153707|P23468-2|PTPRD;nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000142949|P10586-2|PTPRF	nc|ENSG00000153707|P23468-2|PTPRD	MULTI-MATCH	OvCa9_classI_Rep3	3		2	542.818418	1083.62228	1.4858	0.00080653	-6.3066	-0.0034234	-4.8208	-0.0026168	542.8151300242924	126.74	0.63057	125.67	125.44	126.07	-1.0715	-0.047216	-0.003019	NaN	40.573	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38009			25246	5688;2457;5003	20659	20683							0.08381771107792702
KNRNLDLDS	9	Unmodified	_KNRNLDLDS_					0	0	0		KRT79|p.N305K|1|0.48|ENSG00000185640|chr12:52824303-52824303|G/T|missense_variant	KRT79|p.N305K|1|0.48|ENSG00000185640|chr12:52824303-52824303|G/T|missense_variant	KRT79|p.N305K|1|0.48|ENSG00000185640|chr12:52824303-52824303|G/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.2953491210938	2	537.780544	1073.54654	-1.5818	-0.00085065	-0.92081	-0.00049519	-2.5026	-0.0013458	538.2812726087444	60.524	0.2127	57.754	57.606	57.819	-2.7702					6	3	2	0	0	0	0.027455	1	4465	4465		26.693	0	1	12037			25247	14528	20660	20684	28051	28051					0.01270465461175263
KNRNSSNLF	9	Unmodified	_KNRNSSNLF_					0	0	0		tr|A0A553SIQ9|A0A553SIQ9_NIACIUDP-glucose6-dehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_15320PE=3SV=1	tr|A0A553SIQ9|A0A553SIQ9_NIACIUDP-glucose6-dehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_15320PE=3SV=1	tr|A0A553SIQ9|A0A553SIQ9_NIACIUDP-glucose6-dehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_15320PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2542724609375	2	540.283254	1078.55196	2.1776	0.0011765	2.3725	0.0012818	4.5501	0.0024584	540.2844078009723	78.449	0.69745	78.449	78.053	78.75	0					35	16	3	0	0	0	0.027441	1	7992	7992		29.15	8.2026	1	741760			25248	33413	20661	20685	28052	28052					0.01582189043665494
KNRPIIEDT	9	Unmodified	_KNRPIIEDT_					0	0	0			REV__tr|A0A553SRR3|A0A553SRR3_NIACIIS110familytransposaseOS=NialliacirculansOX=1397GN=CEQ21_01655PE=4SV=1	REV__tr|A0A553SRR3|A0A553SRR3_NIACIIS110familytransposaseOS=NialliacirculansOX=1397GN=CEQ21_01655PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	542.6220703125	2	543.301113	1084.58767	0.12698	6.8989E-05	3.8491	0.0020912	3.9761	0.0021602	543.8032171463007	71.147	0.36736	68.639	68.437	68.805	-2.5071					9	6	2	0	0	0	0.027433	1	5716	5716		42.396	0.96952	1	6856.3	+		25249	30757	20662	20686	28053	28053					0.048762265006644157
KNRQQLRQEI	10	Unmodified	_KNRQQLRQEI_					0	0	0			REV__ENST00000606299.1_1_5:148886668-148892751:-|nuORF	REV__ENST00000606299.1_1_5:148886668-148892751:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	438.25250244140625	3	438.252987	1311.73713	-1.4532	-0.00063685	0.9077	0.0003978	-0.54545	-0.00023905	438.253412375869	50.192	1.3389	47.05	46.715	48.054	-3.1416					64	25	4	0	0	0	0.61634	1	2869	2869		40.058	6.1365	1	461750	+		25250	28075	20663	20687	28054	28054					0.09373171843276396
KNRVKVFNQ	9	Unmodified	_KNRVKVFNQ_					0	0	0			REV__nc|ENSG00000164221|Q8NEF3|CCDC112	REV__nc|ENSG00000164221|Q8NEF3|CCDC112	MULTI-MSMS	OvCa9_classI_Rep2	2	566.8328247070312	2	566.832914	1131.65128	-0.064987	-3.6837E-05	-0.13363	-7.5746E-05	-0.19862	-0.00011258	566.832677521409	31.523	0.83896	28.814	28.543	29.382	-2.7097					38	16	3	0	0	0	0.69895	1	973	973		18.324	1.8513	1	67070	+		25251	20961	20664	20688	28055	28055					0.0907163172842047
KNSELGPKI	9	Unmodified	_KNSELGPKI_					0	0	0		ENST00000355312.7_1_12:110367795-110368041:-|nuORF	ENST00000355312.7_1_12:110367795-110368041:-|nuORF	ENST00000355312.7_1_12:110367795-110368041:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.26092529296875	2	493.287474	984.560395	-0.79708	-0.00039319	0.19228	9.485E-05	-0.6048	-0.00029834	493.28772772858423	68.013	0.55335	68.013	67.803	68.356	0					25	13	3	0	0	0	0.02744	1	6412	6412		44.377	1.5129	1	580130			25252	10676	20665	20689	28056	28056					0.06749742960300864
KNSIDRLIN	9	Unmodified	_KNSIDRLIN_					0	0	0			REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.7462564563017426|0.2188578600898351|3.0|428.0|32|2|sense	REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.7462564563017426|0.2188578600898351|3.0|428.0|32|2|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	536.8088989257812	2	536.809105	1071.60366	0.07922	4.2526E-05	-0.75102	-0.00040315	-0.6718	-0.00036063	536.8087209266657	32.865	0.63499	32.865	32.7	33.335	0					22	12	3	0	0	0	0.3249	1	1465	1465		60.118	5.3419	1	347310	+		25253	28437	20666	20690	28057	28057					0.07071932737585485
KNSIKITI	8	Unmodified	_KNSIKITI_					0	0	0			REV__tr|A0A7D6ZUX2|A0A7D6ZUX2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01530PE=4SV=1	REV__tr|A0A7D6ZUX2|A0A7D6ZUX2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01530PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	459.2701110839844	2	458.794935	915.575317	-0.72254	-0.0003315	0.70743	0.00032457	-0.015105	-6.93E-06	458.7949691593891	46.358	1.1374	43.286	43.083	44.221	-3.0724					29	21	3	0	0	0	0.028476	1	2440	2440		35.618	8.9254	1	33452	+		25254	32230	20667	20691	28058	28058					0.11415234828268694
KNSKDFILQN	10	Unmodified	_KNSKDFILQN_					0	0	0			REV__L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|52|1|sense	REV__L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|52|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	602.8740234375	2	603.827495	1205.64044	0.42596	0.00025721	3.5781	0.0021605	4.004	0.0024178	603.8296809430649	105.03	1.0526	102.98	102.71	103.76	-2.0478					31	20	3	0	0	0	0.026685	1	9570	9570		30.318	12.056	1	43468	+		25255	28526	20668	20692	28059	28059					0.04584184563486815
KNSKNHKLI	9	Unmodified	_KNSKNHKLI_					0	0	0		HBS1L|p.N217Kfs*64|1|0.04|ENSG00000112339|chr6:134997545-134997546|-/AATCAGCTTATGATTTTTACTGTTTTTTTTC|frameshift_variant	HBS1L|p.N217Kfs*64|1|0.04|ENSG00000112339|chr6:134997545-134997546|-/AATCAGCTTATGATTTTTACTGTTTTTTTTC|frameshift_variant	HBS1L|p.N217Kfs*64|1|0.04|ENSG00000112339|chr6:134997545-134997546|-/AATCAGCTTATGATTTTTACTGTTTTTTTTC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	540.7709350585938	2	541.327465	1080.64038	-0.69147	-0.00037431	3.3489	0.0018129	2.6575	0.0014386	541.3291347807358	97.694	1.0282	96.735	96.365	97.393	-0.95857					41	20	3	0	0	0	0.027462	1	8815	8815		51.335	15.717	1	86283			25256	14390	20669	20693	28060	28060					0.10328229354149698
KNSLGKHLR	9	Unmodified	_KNSLGKHLR_					0	0	0		ENST00000486587.1_1_9:130215832-130215925:+|nuORF	ENST00000486587.1_1_9:130215832-130215925:+|nuORF	ENST00000486587.1_1_9:130215832-130215925:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2890625	2	526.819807	1051.62506	-0.12638	-6.6579E-05	3.5955	0.0018942	3.4691	0.0018276	526.8214492158017	72.784	0.8334	72.784	72.645	73.479	0					36	20	3	0	0	0	0.027426	1	7157	7157		56.721	10.769	1	611180			25257	12623	20670	20694	28061	28061					0.10131362556944623
KNSLHLDL	8	Unmodified	_KNSLHLDL_					0	0	0		nc|ENSG00000132872|Q9H2B2-2|SYT4;ENSG00000132872|ENST00000255224|SYT4	nc|ENSG00000132872|Q9H2B2-2|SYT4	nc|ENSG00000132872|Q9H2B2-2|SYT4	MULTI-SECPEP	OvCa9_classI_Rep2	2	470.7550048828125	2	470.266542	938.51853	-0.62679	-0.00029476	-0.11246	-5.2888E-05	-0.73926	-0.00034765	470.2663061075557	60.128	1.4086	57.358	56.304	57.712	-2.7702					33	26	2	0	0	0	0.028476	1	4354	4354		23.042	0	1	44796			25258	4181	20671	20695	28062	28062					0.0468118727176261
KNSLINEIL	9	Unmodified	_KNSLINEIL_					0	0	0			REV__tr|A0A7D7A3N5|A0A7D7A3N5_9CLOTHD-GYPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22320PE=4SV=1	REV__tr|A0A7D7A3N5|A0A7D7A3N5_9CLOTHD-GYPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22320PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	522.30810546875	2	522.308406	1042.60226	-0.81099	-0.00042359	-0.55121	-0.0002879	-1.3622	-0.00071149	522.3082136275447	53.391	1.7906	50.578	50.231	52.022	-2.8139					73	35	5	0	0	0	0.094616	1	3604	3604		98.629	5.4339	1	356130	+		25259	32590	20672	20696	28063	28063					0.08266298648823067
KNSLKQLTDP	10	Unmodified	_KNSLKQLTDP_					0	0	0		nc|ENSG00000174502|Q7LBE3-2|SLC26A9;ENSG00000174502|ENST00000367135|SLC26A9	nc|ENSG00000174502|Q7LBE3-2|SLC26A9	nc|ENSG00000174502|Q7LBE3-2|SLC26A9	MULTI-SECPEP	OvCa9_classI_Rep3	3	571.8062744140625	2	572.322045	1142.62954	-1.058	-0.00060552	0.094434	5.4047E-05	-0.96357	-0.00055147	572.3221949667127	90.231	0.82077	88.15	87.85	88.67	-2.0805					35	15	4	0	0	0	0.026659	1	5568	5568		45.972	0	1	56108			25260	15185	20673	20697	28064	28064					0.06392782189163881
KNSLKQLTDP	10	Unmodified	_KNSLKQLTDP_					0	0	0		nc|ENSG00000174502|Q7LBE3-2|SLC26A9;ENSG00000174502|ENST00000367135|SLC26A9	nc|ENSG00000174502|Q7LBE3-2|SLC26A9	nc|ENSG00000174502|Q7LBE3-2|SLC26A9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	571.8069458007812	2	572.322045	1142.62954	-0.27874	-0.00015953	-0.047664	-2.7279E-05	-0.3264	-0.00018681	572.321955609282	90.668	0.82304	88.093	87.904	88.727	-2.575					37	15	4	0	0	0	0.026714	1	7825	7825		51.193	1.6567	1	55763			25261	15185	20673	20697	28065	28065					0.06392782189163881
KNSLLWGTL	9	Unmodified	_KNSLLWGTL_					0	0	0			REV__L1MB2_dup734|chr2:41391481-41393110:-|2.5038669870492565|0.0056028466714037|8.8|420.0|13|1|sense	REV__L1MB2_dup734|chr2:41391481-41393110:-|2.5038669870492565|0.0056028466714037|8.8|420.0|13|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.8078002929688	2	516.297842	1030.58113	-0.79218	-0.000409	-3.2269	-0.0016661	-4.0191	-0.0020751	516.2960182369885	39.438	0.4783	39.438	39.151	39.63	0					23	10	4	0	0	0	0.027462	1	2327	2327		36.447	0	1	627850	+		25262	28407	20674	20698	28066	28066					0.06706333339957382
KNSPPKVTV	9	Unmodified	_KNSPPKVTV_					0	0	0		ENSG00000164252|ENST00000312916|AGGF1	ENSG00000164252|ENST00000312916|AGGF1	ENSG00000164252|ENST00000312916|AGGF1	MULTI-SECPEP	OvCa9_classI_Rep2	2	484.774169921875	2	485.290017	968.565481	0.93454	0.00045352	-4.2138	-0.0020449	-3.2793	-0.0015914	485.2873988353455	91.567	0.89472	90.332	90.219	91.114	-1.2355					21	16	2	0	0	0	0.027426	1	8121	8121		76.774	15.802	1	33524			25263	6436	20675	20699	28067	28067					0.07994046822909695
KNSPTSLLI	9	Unmodified	_KNSPTSLLI_					0	0	0		nc|ENSG00000130783|Q6P9F0-2|CCDC62;ENSG00000130783|ENST00000253079|CCDC62;nc|ENSG00000130783|Q6P9F0-3|CCDC62	nc|ENSG00000130783|Q6P9F0-2|CCDC62	nc|ENSG00000130783|Q6P9F0-2|CCDC62	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.2652587890625	2	486.78985	971.565146	0.26782	0.00013037	-0.42509	-0.00020693	-0.15727	-7.6557E-05	486.78929569520534	68.628	0.88635	65.138	64.916	65.802	-3.4902					37	17	3	0	0	0	0.027425	1	5159	5159		69.628	20.186	1	175690			25264	15013	20676	20700	28068	28068					0.07822627103064406
KNSPTSLLI	9	Unmodified	_KNSPTSLLI_					0	0	0		nc|ENSG00000130783|Q6P9F0-2|CCDC62;ENSG00000130783|ENST00000253079|CCDC62;nc|ENSG00000130783|Q6P9F0-3|CCDC62	nc|ENSG00000130783|Q6P9F0-2|CCDC62	nc|ENSG00000130783|Q6P9F0-2|CCDC62	MULTI-MATCH	OvCa9_classI_Rep2	2		2	486.78985	971.565146	-0.99587	-0.00048478	1.7829	0.00086791	0.78706	0.00038313	486.7898531703737	67.869	1.1355	65.208	64.941	66.077	-2.661	0.03506	0.0014909	NaN	69.628	39	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36813			25265	15013	20676	20700							0.07822627103064406
KNSRLPVW	8	Unmodified	_KNSRLPVW_					0	0	0		ENST00000267205.6_1_12:122216659-122216707:-|nuORF	ENST00000267205.6_1_12:122216659-122216707:-|nuORF	ENST00000267205.6_1_12:122216659-122216707:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.8097229003906	2	500.290351	998.566149	-0.90955	-0.00045504	-0.16124	-8.0666E-05	-1.0708	-0.00053571	500.2902666597362	75.589	1.3366	73.178	72.919	74.256	-2.4106					39	25	2	0	0	0	0.028476	1	3805	3805		31.955	6.5047	1	126720			25266	9966	20677	20701	28069	28069					0.06680886262608965
KNSRRVSF	8	Unmodified	_KNSRRVSF_					0	0	0		nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF;ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1	nc|ENSG00000137812|Q8NG31-3|KNL1	nc|ENSG00000137812|Q8NG31-3|KNL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.3134765625	2	497.283057	992.551562	-0.64548	-0.00032099	3.7443	0.001862	3.0988	0.001541	497.2845293514122	94.836	1.4976	92.367	91.714	93.211	-2.4685					47	29	2	0	0	0	0.028476	1	8340	8340		18.324	10.093	1	247900			25267	4620	20678	20702	28070	28070					0.054988141144804104
KNSRRVSF	8	Unmodified	_KNSRRVSF_					0	0	0		nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF;ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1	nc|ENSG00000137812|Q8NG31-3|KNL1	nc|ENSG00000137812|Q8NG31-3|KNL1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	497.283057	992.551562	-0.042586	-2.1177E-05	3.2654	0.0016238	3.2228	0.0016027	497.28427726911923	93.473	1.8576	92.305	91.288	93.145	-1.168	-0.023967	-0.00044168	NaN	12.207	55	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206220			25268	4620	20678	20702							0.054988141144804104
KNSRRVSF	8	Unmodified	_KNSRRVSF_					0	0	0		nc|ENSG00000137812|Q8NG31-3|KNL1;nc|ENSG00000137812|Q8NG31-4|KNL1;ENST00000533001.1_1_15:40886490-40917961:+|nuORF;ENSG00000137812|ENST00000399668|KNL1;nc|ENSG00000137812|Q8NG31|KNL1	nc|ENSG00000137812|Q8NG31-3|KNL1	nc|ENSG00000137812|Q8NG31-3|KNL1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	497.283057	992.551562	-0.91958	-0.00045729	3.8438	0.0019114	2.9242	0.0014542	497.28472864476396	94.21	1.2089	92.314	92.052	93.261	-1.8956	-0.014438	0.00013352	NaN	12.207	40	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	270940			25269	4620	20678	20702							0.054988141144804104
KNSSGAMALL	10	Unmodified	_KNSSGAMALL_					0	0	0			REV__COL6A6|p.D964N|1|0.37|ENSG00000206384|chr3:130571306-130571306|G/A|missense_variant	REV__COL6A6|p.D964N|1|0.37|ENSG00000206384|chr3:130571306-130571306|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.26739501953125	2	496.265684	990.516816	0.096742	4.801E-05	-0.30045	-0.0001491	-0.20371	-0.00010109	496.26531883907927	56.638	1.8272	53.343	52.718	54.545	-3.2944					107	35	5	0	0	0	0.52321	1	3655	3655		51.335	0.14276	1	946680	+		25270	16166	20679	20703	28071	28071					0.021178101914983927
KNSSSLKHSP	10	Unmodified	_KNSSSLKHSP_					0	0	0		ENSG00000283428|ENST00000638102|CCDC195	ENSG00000283428|ENST00000638102|CCDC195	ENSG00000283428|ENST00000638102|CCDC195	MULTI-MSMS	OvCa9_classI_Rep2	2	542.7941284179688	2	542.790912	1083.56727	0.33382	0.00018119	3.3192	0.0018016	3.653	0.0019828	542.7926281175575	130.39	0.69379	130.16	129.91	130.6	-0.22697					29	13	3	0	0	0	0.66721	1	12835	12835		34.173	0.65696	1	50501			25271	9613	20680	20704	28072	28072					0.02883055840857196
KNSVISLKE	9	Unmodified	_KNSVISLKE_					0	0	0			REV__tr|A0A7D6VQT4|A0A7D6VQT4_9CLOTGTPaseEraOS=ClostridiumintestinaleOX=36845GN=eraPE=3SV=1	REV__tr|A0A7D6VQT4|A0A7D6VQT4_9CLOTGTPaseEraOS=ClostridiumintestinaleOX=36845GN=eraPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	509.30010986328125	2	509.300581	1016.58661	0.73455	0.00037411	-0.98787	-0.00050312	-0.25332	-0.00012902	509.2999535995659	30.076	0.93833	27.366	27.063	28.002	-2.7097					40	18	3	0	0	0	0.62335	1	789	789		29.17	2.374	1	131680	+		25272	31357	20681	20705	28073	28073					0.07898012131772703
KNSWVIIVL	9	Unmodified	_KNSWVIIVL_					0	0	0		L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|343|2|anti-sense	L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|343|2|anti-sense	L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|343|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2801513671875	2	536.331685	1070.64882	1.6626	0.0008917	-0.27492	-0.00014745	1.3877	0.00074425	536.331259921025	135.53	0.5148	135.53	135.27	135.78	0					15	10	2	0	0	0	0.027462	1	15782	15782		7.6903	0	1	50432			25273	14692	20682	20706	28074	28074					0.11631783270763663
KNSYIRKK	8	Unmodified	_KNSYIRKK_					0	0	0		ENSG00000064270|ENST00000262429|ATP2C2;nc|ENSG00000064270|O75185-2|ATP2C2;nc|ENSG00000064270|O75185-3|ATP2C2	ENSG00000064270|ENST00000262429|ATP2C2	ENSG00000064270|ENST00000262429|ATP2C2	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.7913208007812	2	518.816733	1035.61891	-1.2674	-0.00065757	3.3848	0.0017561	2.1174	0.0010985	518.8185159002703	85.366	1.2353	83.875	83.357	84.592	-1.4906					43	24	2	0	0	0	0.028476	1	7462	7462		33.516	6.7195	1	63674			25274	1296	20683	20707	28075	28075					0.10252844325418664
KNSYNLIVN	9	Unmodified	_KNSYNLIVN_					0	0	0			REV__ENST00000502976.5_1_3:128888416-128888497:-|nuORF	REV__ENST00000502976.5_1_3:128888416-128888497:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.7911987304688	2	532.790381	1063.56621	-1.7072	-0.00090959	2.0759	0.001106	0.36869	0.00019644	532.7909915325047	106.25	1.348	104.23	104	105.35	-2.0161					60	25	4	0	0	0	0.35444	1	9677	9677		56.721	0.28726	1	351410	+		25275	26835	20684	20708	28076	28076					0.036968414719467546
KNTARGITIP	10	Unmodified	_KNTARGITIP_					0	0	0		L1PA15_dup4761|chrX:56137796-56140776:+|1.2704796762244717|0.2808252408673861|2.18|428.0|52|2|sense	L1PA15_dup4761|chrX:56137796-56140776:+|1.2704796762244717|0.2808252408673861|2.18|428.0|52|2|sense	L1PA15_dup4761|chrX:56137796-56140776:+|1.2704796762244717|0.2808252408673861|2.18|428.0|52|2|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	535.3328857421875	2	535.819473	1069.62439	-1.1917	-0.00063856	1.1266	0.00060365	-0.065154	-3.4911E-05	535.82006793437	77.576	0.94091	75.787	75.468	76.409	-1.7894					26	17	2	0	0	0	0.026931	1	6497	6497		37.812	25.605	1	23552			25276	14665	20685	20709	28077	28077					0.09236523117237994
KNTEDLSRP	9	Unmodified	_KNTEDLSRP_					0	0	0		ENSG00000257594|ENST00000529983|GALNT4	ENSG00000257594|ENST00000529983|GALNT4	ENSG00000257594|ENST00000529983|GALNT4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.2833862304688	2	530.275095	1058.53564	-0.51541	-0.00027331	1.4504	0.00076909	0.93495	0.00049578	530.2755062569289	90.232	0.65966	87.657	87.45	88.11	-2.575					16	12	2	0	0	0	0.027462	1	7803	7803		20.947	6.2828	1	58453			25277	9474	20686	20710	28078	28078					0.008710630869245506
KNTEDLSRP	9	Unmodified	_KNTEDLSRP_					0	0	0		ENSG00000257594|ENST00000529983|GALNT4	ENSG00000257594|ENST00000529983|GALNT4	ENSG00000257594|ENST00000529983|GALNT4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.275095	1058.53564	1.0247	0.00054339	-0.67436	-0.0003576	0.35037	0.00018579	530.2746787356953	88.987	0.44471	87.62	87.379	87.823	-1.3676	-0.02898	-0.0016754	NaN	20.947	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28321			25278	9474	20686	20710							0.008710630869245506
KNTEDLSRP	9	Unmodified	_KNTEDLSRP_					0	0	0		ENSG00000257594|ENST00000529983|GALNT4	ENSG00000257594|ENST00000529983|GALNT4	ENSG00000257594|ENST00000529983|GALNT4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	530.275095	1058.53564	-0.51536	-0.00027328	1.4111	0.00074826	0.89572	0.00047498	530.2755484250843	89.75	0.25702	87.67	87.541	87.798	-2.0805	0.021025	0.00053629	NaN	20.947	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51155			25279	9474	20686	20710							0.008710630869245506
KNTFLVQLL	9	Unmodified	_KNTFLVQLL_					0	0	0			REV__ZNF782|p.M133Ifs*18|1|0.06|ENSG00000196597|chr9:96819624-96819624|C/-|frameshift_variant	REV__ZNF782|p.M133Ifs*18|1|0.06|ENSG00000196597|chr9:96819624-96819624|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	538.3302612304688	2	538.329142	1074.64373	-0.07357	-3.9605E-05	-0.57478	-0.00030942	-0.64835	-0.00034902	538.3285886284546	84.118	2.7065	81.857	81.39	84.096	-2.261					127	55	4	0	0	0	0.14998	1	4874	4874		84.916	15.288	1	1124900	+		25280	22848	20687	20711	28079	28079					0.10939479408125408
KNTINLVPQ	9	Unmodified	_KNTINLVPQ_					0	0	0			REV__nc|ENSG00000021826|P31327-3|CPS1	REV__nc|ENSG00000021826|P31327-3|CPS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.7991943359375	2	513.800749	1025.58694	0.45399	0.00023326	-3.4555	-0.0017754	-3.0015	-0.0015422	513.7987957920849	32.115	0.81847	29.42	28.786	29.605	-2.6954					76	29	3	0	0	0	0.42676	1	757	757		49.442	7.0454	1	87672	+		25281	16550	20688	20712	28080	28080					0.07517431851601941
KNTKQQNNA	9	Unmodified	_KNTKQQNNA_					0	0	0		nc|ENSG00000112782|Q9NZA1-3|CLIC5;ENSG00000112782|ENST00000339561|CLIC5;nc|ENSG00000112782|Q9NZA1|CLIC5	nc|ENSG00000112782|Q9NZA1-3|CLIC5	nc|ENSG00000112782|Q9NZA1-3|CLIC5	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.2969360351562	2	523.272887	1044.53122	0.68688	0.00035942	4.0493	0.0021189	4.7361	0.0024783	523.2749893463724	124.39	0.92194	124.39	124.15	125.07	0					28	19	2	0	0	0	0.027462	1	14440	14440		23.042	3.0457	1	85919			25282	2927	20689	20713	28081	28081					0.010735986639929251
KNTKYDVI	8	Unmodified	_KNTKYDVI_					0	0	0			REV__tr|A0A7D6ZJJ5|A0A7D6ZJJ5_9CLOTVitaminB12-dependentribonucleotidereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08775PE=3SV=1	REV__tr|A0A7D6ZJJ5|A0A7D6ZJJ5_9CLOTVitaminB12-dependentribonucleotidereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08775PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	490.77484130859375	2	490.7742	979.533846	-1.1941	-0.00058601	0.83173	0.00040819	-0.36233	-0.00017782	490.77442955585013	91.231	1.3058	89.207	88.829	90.135	-2.0241					71	25	4	0	0	0	0.48084	1	5708	5708		79.451	2.6044	1	1112000	+		25283	32085	20690	20714	28082	28082					0.04326054068940266
KNTNYSLKQ	9	Unmodified	_KNTNYSLKQ_					0	0	0		tr|A0A7D6ZVU0|A0A7D6ZVU0_9CLOTAlanineracemaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16295PE=4SV=1	tr|A0A7D6ZVU0|A0A7D6ZVU0_9CLOTAlanineracemaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16295PE=4SV=1	tr|A0A7D6ZVU0|A0A7D6ZVU0_9CLOTAlanineracemaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16295PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.2920532226562	2	548.293288	1094.57202	0.25968	0.00014238	0.27955	0.00015327	0.53923	0.00029565	548.2932673425398	73.92	0.84146	73.92	73.636	74.478	0					33	21	2	0	0	0	0.027462	1	7270	7270		41.427	7.2541	1	769830			25284	35815	20691	20715	28083	28083					0.028519399836113735
KNTRKTLI	8	Unmodified	_KNTRKTLI_					0	0	0			REV__tr|A0A553SRP2|A0A553SRP2_NIACIHxlRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_01420PE=4SV=1	REV__tr|A0A553SRP2|A0A553SRP2_NIACIHxlRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_01420PE=4SV=1	MSMS	OvCa9_classI_Rep4_	4	487.3106384277344	2	487.311284	972.608014	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.81	1	103.79	103.29	104.29	-2.0161								0	0	0	0.30129	1	9615	9615		42.474	0	1		+		25285	30752	20692	20716	28084	28084					0.12061441951141205
KNTVAKAIKP	10	Unmodified	_KNTVAKAIKP_					0	0	0			REV__tr|A0A553SMX0|A0A553SMX0_NIACIPhospholipaseOS=NialliacirculansOX=1397GN=CEQ21_23345PE=4SV=1	REV__tr|A0A553SMX0|A0A553SMX0_NIACIPhospholipaseOS=NialliacirculansOX=1397GN=CEQ21_23345PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2474975585938	2	535.340041	1068.66553	1.0046	0.00053782	0.89862	0.00048107	1.9033	0.0010189	535.3405526777847	114.07	0.54472	114.07	113.83	114.38	0					18	11	2	0	0	0	0.026782	1	13016	13016		37.812	11.015	1	174080	+		25286	30378	20693	20717	28085	28085					0.13394284156697722
KNTVELLVED	10	Unmodified	_KNTVELLVED_					0	0	0		FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant;FLNB|p.S2513Rfs*5|1|0.04|ENSG00000136068|chr3:58169710-58169711|-/GATTC|frameshift_variant;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;FLNB|p.T1593Ifs*40|1|0.08|ENSG00000136068|chr3:58136084-58136085|-/TCTATCAAGTC|frameshift_variant;nc|ENSG00000136068|O75369-7|FLNB;FLNB|p.L1100Ffs*93|1|0.04|ENSG00000136068|chr3:58123263-58123263|C/-|frameshift_variant	FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant	FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	580.83837890625	2	580.313886	1158.61322	0.78905	0.0004579	0.42458	0.00024639	1.2136	0.00070429	580.3137085193347	91.291	1.1068	90.056	89.587	90.694	-1.2355					55	20	4	0	0	0	0.026688	1	8149	8149		40.778	0	1	126460			25287	4455	20694	20718	28086	28086					0.040256562324202605
KNTYLVLV	8	Unmodified	_KNTYLVLV_					0	0	0		ENST00000274242.9_2_5:40832528-40832603:-|nuORF	ENST00000274242.9_2_5:40832528-40832603:-|nuORF	ENST00000274242.9_2_5:40832528-40832603:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.2904968261719	2	475.289485	948.564418	1.349	0.00064118	-1.6559	-0.00078704	-0.30688	-0.00014586	475.2885760846297	97.366	1.7143	94.987	94.563	96.277	-2.3786					89	33	4	0	0	0	0.6962	1	8675	8675		44.117	5.3107	1	801880			25288	10017	20695	20719	28087	28087					0.08807832453987885
KNVARCIDI	9	Unmodified	_KNVARCIDI_					0	0	0			REV__tr|A0A553SSZ5|A0A553SSZ5_NIACITranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03990PE=4SV=1	REV__tr|A0A553SSZ5|A0A553SSZ5_NIACITranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03990PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.2845458984375	2	516.286951	1030.55935	-0.25382	-0.00013104	-3.169	-0.0016361	-3.4228	-0.0017671	516.2847369149343	71.67	0.40826	71.67	71.427	71.835	0					15	9	3	0	0	0	0.26076	1	6944	6944		67.494	7.3754	1	2911400	+		25289	30898	20696	20720	28088	28088					0.04529205319727225
KNVELNSHE	9	Unmodified	_KNVELNSHE_					0	0	0			REV__nc|ENSG00000105426|Q13332-7|PTPRS;REV__nc|ENSG00000153707|P23468-2|PTPRD;REV__nc|ENSG00000153707|P23468-7|PTPRD	REV__nc|ENSG00000105426|Q13332-7|PTPRS	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.2869873046875	2	535.26727	1068.51999	-1.8397	-0.00098475	1.4752	0.00078962	-0.36454	-0.00019513	535.2679612711992	54.235	0.71707	50.988	50.825	51.542	-3.2474					30	13	3	0	0	0	0.027462	1	3335	3335		47.657	8.4045	1	83874	+		25290	17725;20345;28936	20697	20721	28089	28089					-0.01153223430151229
KNVFQITTVS	10	Unmodified	_KNVFQITTVS_					0	0	0		ENST00000552641.5_1_2:143913059-144194625:+|nuORF;ENSG00000075884|ENST00000295095|ARHGAP15	ENST00000552641.5_1_2:143913059-144194625:+|nuORF	ENST00000552641.5_1_2:143913059-144194625:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.8483276367188	2	568.819138	1135.62372	-0.76388	-0.00043451	-1.0283	-0.00058489	-1.7921	-0.0010194	568.8182437284986	72.144	0.7804	68.687	68.509	69.289	-3.4563					43	15	3	0	0	0	0.02709	1	5599	5599		16.717	1.0756	1	401210			25291	1545	20698	20722	28090	28090					0.061336836774898984
KNVFYFLL	8	Unmodified	_KNVFYFLL_					0	0	0		tr|A0A7D7A3S5|A0A7D7A3S5_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_00905PE=4SV=1	tr|A0A7D7A3S5|A0A7D7A3S5_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_00905PE=4SV=1	tr|A0A7D7A3S5|A0A7D7A3S5_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_00905PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	522.2962646484375	2	522.299853	1042.58515	-0.45713	-0.00023876	-3.6738	-0.0019188	-4.1309	-0.0021576	522.297746706886	99.648	1.0909	98.818	98.467	99.558	-0.83052					63	21	4	0	0	0	0.65582	1	9090	9090		52.299	6.3472	1	252010			25292	36128	20699	20723	28091	28091					0.06556422833659781
KNVIEQSAPQ	10	Unmodified	_KNVIEQSAPQ_					0	0	0			REV__ENSG00000175105|ENST00000636215|ZNF654	REV__ENSG00000175105|ENST00000636215|ZNF654	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.8784790039062	2	557.29857	1112.58259	-0.2598	-0.00014478	-0.88008	-0.00049047	-1.1399	-0.00063525	557.2979938653519	38.031	0.26427	38.031	37.896	38.161	0					8	5	2	0	0	0	0.026551	1	2129	2129		69.628	27.231	1	31181	+		25293	21870	20700	20724	28092	28092					0.03079922638039534
KNVILPLFY	9	Unmodified	_KNVILPLFY_					0	0	0			REV__chr20:49135931-49143854|113|13.45|0.47|4.83|-|0|TE_info:Looper,Looper_dup505,PiggyBac,DNA,donor,-,49143854,49145139|STAU1,None|19	REV__chr20:49135931-49143854|113|13.45|0.47|4.83|-|0|TE_info:Looper,Looper_dup505,PiggyBac,DNA,donor,-,49143854,49145139|STAU1,None|19	MULTI-SECPEP	OvCa9_classI_Rep3	3	554.8233032226562	2	553.83406	1105.65357	-1.363	-0.00075489	-3.0308	-0.0016786	-4.3939	-0.0024335	553.8324837783566	101.03	1.7169	99.42	99.144	100.86	-1.6053					42	32	2	0	0	0	0.027462	1	6944	6944		33.516	25.825	1	55773	+		25294	16020	20701	20725	28093	28093					0.10496667413508476
KNVITIPLE	9	Unmodified	_KNVITIPLE_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-MSMS	OvCa9_classI_Rep2	2	513.8156127929688	2	513.813325	1025.6121	-0.4504	-0.00023142	3.9685	0.002039	3.5181	0.0018076	513.8152848157494	74.741	2.4404	72.77	72.324	74.764	-1.9711					110	46	3	0	0	0	0.37135	1	6148	6148		54.776	5.3348	1	2623500	+		25295	21079	20702	20726	28094	28094					0.10031486654202126
KNVKVEKKP	9	Unmodified	_KNVKVEKKP_					0	0	0			REV__ENST00000502972.1_1_4:48859213-48862776:+|nuORF	REV__ENST00000502972.1_1_4:48859213-48862776:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.30615234375	2	535.340041	1068.66553	0.26688	0.00014287	-0.73647	-0.00039426	-0.46959	-0.00025139	535.339498984182	72.77	0.54031	72.77	72.533	73.074	0					34	13	4	0	0	0	0.027418	1	7111	7111		49.442	0	1	1395700	+		25296	17922	20703	20727	28095	28095					0.13394284156697722
KNVKYLVPF	9	Unmodified	_KNVKYLVPF_					0	0	0			REV__ENST00000261168.8_1_12:14654701-14654992:+|nuORF	REV__ENST00000261168.8_1_12:14654701-14654992:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.813232421875	2	554.331685	1106.64882	-0.59308	-0.00032876	-3.2741	-0.0018149	-3.8671	-0.0021437	554.3294840009523	45.941	0.5231	42.869	42.718	43.241	-3.0724					12	9	2	0	0	0	0.027462	1	2363	2363		26.796	15.285	1	15034	+		25297	23939	20704	20728	28096	28096					0.09975783270760985
KNVLIEVNP	9	Unmodified	_KNVLIEVNP_					0	0	0		ENSG00000126749|ENST00000599672|EMG1	ENSG00000126749|ENST00000599672|EMG1	ENSG00000126749|ENST00000599672|EMG1	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.2655029296875	2	513.303124	1024.5917	3.6189	0.0018576	1.6811	0.00086291	5.3	0.0027205	513.30219283853	88.347	0.88148	88.347	87.962	88.843	0					52	20	4	0	0	0	0.027447	1	9414	9414		47.657	19.576	1	1534600			25298	3796	20705	20729	28097	28097					0.0803831599437217
KNVLKDGPA	9	Unmodified	_KNVLKDGPA_					0	0	0		nc|ENSG00000081026|Q5TCQ9-3|MAGI3;nc|ENSG00000081026|Q5TCQ9-2|MAGI3;ENSG00000081026|ENST00000307546|MAGI3;nc|ENSG00000081026|Q5TCQ9-1|MAGI3	nc|ENSG00000081026|Q5TCQ9-3|MAGI3	nc|ENSG00000081026|Q5TCQ9-3|MAGI3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.8092346191406	2	471.274367	940.53418	1.3895	0.00065482	-0.32761	-0.00015439	1.0619	0.00050042	471.27362848697146	68.339	0.63998	64.848	64.622	65.262	-3.4902					29	12	4	0	0	0	0.02744	1	5068	5068		36.447	0	1	74081			25299	1650	20706	20730	28098	28098					0.061534737887996016
KNVLPGVL	8	Unmodified	_KNVLPGVL_					0	0	0			REV__ENSG00000142583|ENST00000377424|SLC2A5	REV__ENSG00000142583|ENST00000377424|SLC2A5	MULTI-MSMS	OvCa9_classI_Rep4_	4	420.2713928222656	2	420.271096	838.527639	-1.0841	-0.00045562	1.3621	0.00057247	0.27804	0.00011685	420.27150279297234	121.04	1.2252	119.7	119.39	120.62	-1.3479					46	23	3	0	0	0	0.66704	1	11424	11424		50.025	7.5501	1	105860	+		25300	19792	20707	20731	28099	28099					0.10191580628099928
KNVLPGVLLS	10	Unmodified	_KNVLPGVLLS_					0	0	0			REV__ENSG00000142583|ENST00000377424|SLC2A5	REV__ENSG00000142583|ENST00000377424|SLC2A5	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.793701171875	2	520.329142	1038.64373	1.0904	0.00056736	1.0051	0.00052298	2.0955	0.0010903	520.3295151955708	92.278	0.3334	92.278	92.052	92.385	0					14	7	3	0	0	0	0.027056	1	9976	9976		14.865	0	1	173140	+		25301	19792	20708	20732	28100	28100					0.12595479408150823
KNVLVSSV	8	Unmodified	_KNVLVSSV_					0	0	0			REV__ENST00000549928.5_1_12:60154925-60173457:+|nuORF	REV__ENST00000549928.5_1_12:60154925-60173457:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	423.2580871582031	2	423.258185	844.501818	-0.75671	-0.00032028	1.1802	0.00049952	0.42347	0.00017924	423.2586030410109	40.349	1.0951	37.395	37.162	38.257	-2.9541					33	20	2	0	0	0	0.72896	1	1731	1731		37.159	3.6435	1	153350	+		25302	18407	20709	20733	28101	28101					0.07334686385809164
KNVLVSSV	8	Unmodified	_KNVLVSSV_					0	0	0			REV__ENST00000549928.5_1_12:60154925-60173457:+|nuORF	REV__ENST00000549928.5_1_12:60154925-60173457:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	423.258185	844.501818	-0.029588	-1.2524E-05	2.8578	0.0012096	2.8283	0.0011971	423.259386802011	40.3	1.0399	37.59	37.152	38.192	-2.7097	0.09762	0.0012166	NaN	37.159	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31314	+		25303	18407	20709	20733							0.07334686385809164
KNVLVSSV	8	Unmodified	_KNVLVSSV_					0	0	0			REV__ENST00000549928.5_1_12:60154925-60173457:+|nuORF	REV__ENST00000549928.5_1_12:60154925-60173457:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	423.258185	844.501818	-0.75671	-0.00032028	1.1802	0.00049952	0.42347	0.00017924	423.2586030410109	40.349	1.0951	37.395	37.162	38.257	-2.9541	-0.09762	-0.0002036	NaN	37.159	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153350	+		25304	18407	20709	20733							0.07334686385809164
KNVMTVKTDL	10	Unmodified	_KNVMTVKTDL_					0	0	0			REV__ENST00000463491.1_1_20:35457204-35467793:-|nuORF	REV__ENST00000463491.1_1_20:35457204-35467793:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	574.286865234375	2	574.820824	1147.62709	-0.17385	-9.9932E-05	-3.2815	-0.0018863	-3.4553	-0.0019862	574.8189763638293	112.22	1.1786	110.71	110.26	111.44	-1.5111					41	22	3	0	0	0	0.026849	1	10427	10427		25.574	0	1	49375	+		25305	26132	20710	20734	28102	28102					0.05918610459889351
KNVNEFKKLF	10	Unmodified	_KNVNEFKKLF_					0	0	0		tr|A0A7D6VR74|A0A7D6VR74_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00375PE=4SV=1	tr|A0A7D6VR74|A0A7D6VR74_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00375PE=4SV=1	tr|A0A7D6VR74|A0A7D6VR74_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00375PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	423.206787109375	3	422.911679	1265.71321	-0.68844	-0.00029115	-3.2858	-0.0013896	-3.9742	-0.0016807	423.2446938068872	52.656	0.54778	49.448	49.247	49.795	-3.208					13	10	2	0	0	0	0.02709	1	3182	3182		29.17	6.5904	1	27641			25306	34900	20711	20735	28103	28103					0.09097938356876512
KNVPIKITY	9	Unmodified	_KNVPIKITY_					0	0	0		tr|A0A7D7A581|A0A7D7A581_9CLOTArgininosuccinatesynthaseOS=ClostridiumintestinaleOX=36845GN=argGPE=3SV=1	tr|A0A7D7A581|A0A7D7A581_9CLOTArgininosuccinatesynthaseOS=ClostridiumintestinaleOX=36845GN=argGPE=3SV=1	tr|A0A7D7A581|A0A7D7A581_9CLOTArgininosuccinatesynthaseOS=ClostridiumintestinaleOX=36845GN=argGPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	538.3267822265625	2	538.329142	1074.64373	-5.6218	-0.0030264	1.9414	0.0010451	-3.6804	-0.0019813	538.3300395836094	158.87	1.4268	157.61	157.3	158.73	-1.267					79	27	5	0	0	0	0.61208	1	13763	13763		30.504	7.4612	1	528870			25307	36161	20712	20736	28104	28104					0.10939479408125408
KNVQVHLIH	9	Unmodified	_KNVQVHLIH_					0	0	0		tr|A0A7D6ZZD9|A0A7D6ZZD9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19730PE=4SV=1	tr|A0A7D6ZZD9|A0A7D6ZZD9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19730PE=4SV=1	tr|A0A7D6ZZD9|A0A7D6ZZD9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19730PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.8043823242188	2	544.322183	1086.62981	-0.52437	-0.00028542	-3.0871	-0.0016804	-3.6115	-0.0019658	544.3205892741986	54.71	0.55679	54.71	54.378	54.935	0					27	12	3	0	0	0	0.027462	1	4399	4399		33.516	0	1	460040			25308	35957	20713	20737	28105	28105					0.08996246699712174
KNVRHIKV	8	Unmodified	_KNVRHIKV_					0	0	0			REV__nc|ENSG00000134759|Q6IA86-7|ELP2	REV__nc|ENSG00000134759|Q6IA86-7|ELP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.27081298828125	2	497.319443	992.624333	-0.83003	-0.00041279	2.0179	0.0010035	1.1879	0.00059074	497.3198185265199	53.368	0.39112	53.368	53.172	53.564	0					12	8	2	0	0	0	0.028476	1	4218	4218		3.6843	0	1	162650	+		25309	19228	20714	20738	28106	28106					0.12772567907882149
KNVRTILI	8	Unmodified	_KNVRTILI_					0	0	0		ENST00000231498.7_1_5:37291884-37291974:-|nuORF	ENST00000231498.7_1_5:37291884-37291974:-|nuORF	ENST00000231498.7_1_5:37291884-37291974:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	478.81781005859375	2	478.816202	955.617851	2.2878	0.0010954	-0.31137	-0.00014909	1.9764	0.00094634	478.81591090514485	78.397	0.57506	78.397	78.093	78.668	0					28	13	3	0	0	0	0.64371	1	7956	7956		54.776	8.8244	1	1023500			25310	9724	20715	20739	28107	28107					0.13826629956531633
KNVRTNYLDSI	11	Unmodified	_KNVRTNYLDSI_					0	0	0			REV__NLRC5|p.F213Y|1|0.24|ENSG00000140853|chr16:57025581-57025581|T/A|missense_variant	REV__NLRC5|p.F213Y|1|0.24|ENSG00000140853|chr16:57025581-57025581|T/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.2670593261719	3	441.573614	1321.69901	-0.35968	-0.00015883	0.1526	6.7383E-05	-0.20708	-9.1442E-05	441.57355191068694	62.198	0.88045	58.741	58.523	59.403	-3.4577					22	17	2	0	0	0	0.026033	1	4377	4377		22.562	8.4756	1	37730	+		25311	29255	20716	20740	28108	28108					0.051032411379537734
KNVTFHGVLLD	11	Unmodified	_KNVTFHGVLLD_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OvCa9_classI_Rep2	2	414.8983459472656	3	414.89955	1241.67682	0.68431	0.00028392	-3.7605	-0.0015602	-3.0762	-0.0012763	414.8979200056025	40.385	1.1346	37.675	37.402	38.536	-2.7097					61	22	4	0	0	0	0.57194	1	2038	2038		47.228	14.415	1	373030			25312	7034	20717	20741	28109	28109					0.06565061460173638
KNVTIHADF	9	Unmodified	_KNVTIHADF_					0	0	0		tr|A0A553SFW1|A0A553SFW1_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09610PE=4SV=1	tr|A0A553SFW1|A0A553SFW1_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09610PE=4SV=1	tr|A0A553SFW1|A0A553SFW1_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09610PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	522.7792358398438	2	522.777274	1043.53999	0.62719	0.00032788	2.9366	0.0015352	3.5638	0.0018631	522.7785887312914	124.27	1.1341	124.04	123.63	124.77	-0.23193					52	22	4	0	0	0	0.5811	1	12102	12102		34.173	2.2177	1	132650			25313	33083	20718	20742	28110	28110					0.019965723004588654
KNVTRAFAY	9	Unmodified	_KNVTRAFAY_					0	0	0			REV__ENSG00000250821|ENST00000636125|EXOC1L	REV__ENSG00000250821|ENST00000636125|EXOC1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2935180664062	2	535.293091	1068.57163	1.7902	0.00095827	1.5383	0.00082342	3.3284	0.0017817	535.2944047166571	77.89	0.3391	77.89	77.672	78.011	0					10	7	2	0	0	0	0.027353	1	7849	7849		71.877	0	1	186570	+		25314	23496	20719	20743	28111	28111					0.04008565054414248
KNVVKVIVI	9	Unmodified	_KNVVKVIVI_					0	0	0		tr|A0A7D6VVC5|A0A7D6VVC5_9CLOTLeucine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=leuSPE=3SV=1	tr|A0A7D6VVC5|A0A7D6VVC5_9CLOTLeucine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=leuSPE=3SV=1	tr|A0A7D6VVC5|A0A7D6VVC5_9CLOTLeucine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=leuSPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.2662353515625	2	506.349877	1010.6852	2.1072	0.001067	-0.10827	-5.4822E-05	1.9989	0.0010121	506.3496852406694	85.027	1.1536	85.027	84.758	85.912	0					63	27	4	0	0	0	0.027462	1	8874	8874		24.203	10.749	1	7571700			25315	35217	20720	20744	28112	28112					0.18028660167453836
KNWEKALL	8	Unmodified	_KNWEKALL_					0	0	0		ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	ENSG00000165684|ENST00000684778|SNAPC4	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.76397705078125	2	501.292559	1000.57057	-0.33228	-0.00016657	-4.4459	-0.0022287	-4.7781	-0.0023952	501.2903358073717	35.788	0.55293	35.788	35.566	36.119	0					16	11	2	0	0	0	0.028476	1	1871	1871		17.365	3.5896	1	610810			25316	6591	20721	20745	28113	28113					0.07030350685522535
KNWKEFLN	8	Unmodified	_KNWKEFLN_					0	0	0		tr|A0A553SMP1|A0A553SMP1_NIACIGlycosyltransferasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_22940PE=4SV=1	tr|A0A553SMP1|A0A553SMP1_NIACIGlycosyltransferasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_22940PE=4SV=1	tr|A0A553SMP1|A0A553SMP1_NIACIGlycosyltransferasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_22940PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.8272094726562	2	539.787641	1077.56073	-0.4875	-0.00026314	3.4809	0.0018789	2.9934	0.0016158	539.7894369050609	93.364	0.80722	91.402	91.178	91.986	-1.9617					40	15	3	0	0	0	0.028476	1	5970	5970		55.504	0	1	545680			25317	33857	20722	20746	28114	28114					0.025051626801541715
KNWKRKII	8	Unmodified	_KNWKRKII_					0	0	0		ENSG00000146250|ENST00000369700|PRSS35	ENSG00000146250|ENST00000369700|PRSS35	ENSG00000146250|ENST00000369700|PRSS35	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.812744140625	2	543.350743	1084.68693	2.9032	0.0015775	-2.3732	-0.0012895	0.53006	0.00028801	543.3494785736742	89.617	1.2275	89.617	89.119	90.346	0					43	29	3	0	0	0	0.028476	1	9605	9605		79.939	0	1	822100			25318	5279	20723	20747	28115	28115					0.1479771397607692
KNWLLQGQ	8	Unmodified	_KNWLLQGQ_					0	0	0		nc|ENSG00000163808|Q9NS87-3|KIF15;nc|ENSG00000163808|Q9NS87-2|KIF15;ENSG00000163808|ENST00000326047|KIF15	nc|ENSG00000163808|Q9NS87-3|KIF15	nc|ENSG00000163808|Q9NS87-3|KIF15	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.7571105957031	2	493.774534	985.534515	-0.52744	-0.00026044	-3.6409	-0.0017978	-4.1683	-0.0020582	493.77260770088174	47.92	0.65269	47.92	47.551	48.204	0					30	14	3	0	0	0	0.028476	1	3450	3450		33.516	1.9858	1	1024200			25319	6361	20724	20748	28116	28116					0.04116893508660269
KNWRIFKG	8	Unmodified	_KNWRIFKG_					0	0	0		CON__Q28107	CON__Q28107	CON__Q28107	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.3209228515625	2	524.806168	1047.59778	0.1661	8.7169E-05	-1.8795	-0.00098637	-1.7134	-0.0008992	524.8049854912189	109	0.39572	108.78	108.47	108.87	-0.22498					11	7	2	0	0	0	0.028476	1	10189	10189		26.796	0	1	11556		+	25320	638	20725	20749	28117	28117					0.07588879016566352
KNWVIKPR	8	Unmodified	_KNWVIKPR_					0	0	0			REV__nc|ENSG00000153707|P23468-2|PTPRD;REV__nc|ENSG00000153707|P23468-7|PTPRD	REV__nc|ENSG00000153707|P23468-2|PTPRD	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.8157958984375	2	520.821818	1039.62908	0.72235	0.00037622	-4.0195	-0.0020934	-3.2971	-0.0017172	520.8195008680065	30.933	0.4917	28.224	28.051	28.543	-2.7097					11	9	2	0	0	0	0.028476	1	873	873		42.474	6.8562	1	18598	+		25321	20345;28936	20726	20750	28118	28118					0.11085452050656386
KNYKEKLAK	9	Unmodified	_KNYKEKLAK_					0	0	0			REV__nc|ENSG00000151746|Q96G01-4|BICD1	REV__nc|ENSG00000151746|Q96G01-4|BICD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.3399658203125	2	561.337498	1120.66044	2.9106	0.0016338	0.53812	0.00030207	3.4487	0.0019359	561.3377133109354	138.18	1.1265	136.65	136.26	137.38	-1.5284					44	25	2	0	0	0	0.61208	1	13462	13462		30.504	1.3541	1	51962	+		25322	20254	20727	20751	28119	28119					0.10493980294063476
KNYKGWIL	8	Unmodified	_KNYKGWIL_					0	0	0		tr|A0A7D7A6C3|A0A7D7A6C3_9CLOTNERDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09815PE=4SV=1	tr|A0A7D7A6C3|A0A7D7A6C3_9CLOTNERDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09815PE=4SV=1	tr|A0A7D7A6C3|A0A7D7A6C3_9CLOTNERDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09815PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.7780456542969	2	511.295102	1020.57565	-1.4227	-0.0007274	3.7592	0.0019221	2.3365	0.0011947	511.296853228176	72.595	1.3605	69.199	68.667	70.027	-3.3961					57	27	3	0	0	0	0.028476	1	5615	5615		25.45	0	1	62787			25323	36190	20728	20752	28120	28120					0.06618654548140057
KNYKQFYQIAR	11	Unmodified	_KNYKQFYQIAR_					0	0	0			REV__tr|A0A7D6ZZT5|A0A7D6ZZT5_9CLOTNucleartransportfactor2familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07520PE=4SV=1	REV__tr|A0A7D6ZZT5|A0A7D6ZZT5_9CLOTNucleartransportfactor2familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07520PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	486.93524169921875	3	486.933254	1457.77793	-0.34546	-0.00016822	3.711	0.001807	3.3655	0.0016388	486.9350378514625	44.78	0.62901	44.78	44.573	45.202	0					45	13	4	0	0	0	0.69735	1	3054	3054		30.569	1.9921	1	2512000	+		25324	32421	20729	20753	28121	28121					0.06735513162880125
KNYLKHQR	8	Unmodified	_KNYLKHQR_					0	0	0			REV__TRRAP|p.Q3700Cfs*14|1|0.37|ENSG00000196367|chr7:99011251-99011252|-/GTGCGTTAAATCTGTCACCAGAA|frameshift_variant	REV__TRRAP|p.Q3700Cfs*14|1|0.37|ENSG00000196367|chr7:99011251-99011252|-/GTGCGTTAAATCTGTCACCAGAA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7619018554688	2	543.811982	1085.60941	-1.0717	-0.00058282	-1.3448	-0.00073131	-2.4165	-0.0013141	543.8110375394218	36.729	0.49079	36.729	36.532	37.023	0					22	10	3	0	0	0	0.028476	1	1946	1946		24.203	6.8378	1	473700	+		25325	22817	20730	20754	28122	28122					0.07003076039904954
KNYLLQLIE	9	Unmodified	_KNYLLQLIE_					0	0	0			REV__tr|A0A7D6VMU2|A0A7D6VMU2_9CLOTHeat-inducibletranscriptionrepressorHrcAOS=ClostridiumintestinaleOX=36845GN=hrcAPE=3SV=1	REV__tr|A0A7D6VMU2|A0A7D6VMU2_9CLOTHeat-inducibletranscriptionrepressorHrcAOS=ClostridiumintestinaleOX=36845GN=hrcAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	567.833251953125	2	567.331882	1132.64921	1.8907	0.0010727	-1.9796	-0.0011231	-0.088848	-5.0406E-05	567.3321853755098	92.516	0.79472	92.516	92.216	93.011	0					55	18	4	0	0	0	0.094616	1	10008	10008		98.629	2.4389	1	3876300	+		25326	31148	20731	20755	28123	28123					0.08819158199980848
KNYLSGRSL	9	Unmodified	_KNYLSGRSL_					0	0	0			REV__tr|A0A553SMG3|A0A553SMG3_NIACIGlycosidehydrolase105familyproteinOS=NialliacirculansOX=1397GN=CEQ21_22525PE=4SV=1	REV__tr|A0A553SMG3|A0A553SMG3_NIACIGlycosidehydrolase105familyproteinOS=NialliacirculansOX=1397GN=CEQ21_22525PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	519.2925415039062	2	519.290548	1036.56654	0.36049	0.0001872	3.9646	0.0020588	4.3251	0.002246	519.2925810165003	109.55	1.3356	109.37	109.17	110.5	-0.17237					43	26	2	0	0	0	0.44568	1	10303	10303		47.657	4.7931	1	115850	+		25327	30326	20732	20756	28124	28124					0.049722611918241455
KNYNNLVVL	9	Unmodified	_KNYNNLVVL_					0	0	0			REV__tr|A0A7D6VSQ5|A0A7D6VSQ5_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05950PE=4SV=1	REV__tr|A0A7D6VSQ5|A0A7D6VSQ5_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05950PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.775146484375	2	538.808574	1075.60259	2.0871	0.0011246	3.4508	0.0018593	5.538	0.0029839	538.8101658752255	76.537	0.64161	76.537	76.199	76.841	0					21	15	2	0	0	0	0.027462	1	7642	7642		31.955	22.772	1	804980	+		25328	31530	20733	20757	28125	28125					0.06781718368665679
KNYREYQI	8	Unmodified	_KNYREYQI_					0	0	0		tr|A0A7D6ZXF0|A0A7D6ZXF0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22715PE=4SV=1	tr|A0A7D6ZXF0|A0A7D6ZXF0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22715PE=4SV=1	tr|A0A7D6ZXF0|A0A7D6ZXF0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22715PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.309326171875	2	557.288005	1112.56146	-0.14505	-8.0835E-05	-3.0077	-0.0016761	-3.1527	-0.001757	557.2863648940131	38.64	0.94821	38.64	38.114	39.063	0					45	20	3	0	0	0	0.028476	1	2200	2200		60.972	11.53	1	727060			25329	35877	20734	20758	28126	28126					0.009679573291805355
KNYSQESNL	9	Unmodified	_KNYSQESNL_					0	0	0			REV__ENSG00000240857|ENST00000381249|RDH14	REV__ENSG00000240857|ENST00000381249|RDH14	MULTI-SECPEP	OvCa9_classI_Rep2	2	540.7709350585938	2	541.759278	1081.504	-0.4674	-0.00025322	-0.3089	-0.00016735	-0.7763	-0.00042057	542.2597405751974	97.224	0.39517	96.265	96.019	96.414	-0.95857					11	7	2	0	0	0	0.027462	1	8797	8797		47.657	11.211	1	6767.1	+		25330	23443	20735	20759	28127	28127					-0.033489296670495605
KPAARQKA	8	Unmodified	_KPAARQKA_					0	0	0			REV__ENST00000481829.5_1_1:159035725-159038438:-|nuORF	REV__ENST00000481829.5_1_1:159035725-159038438:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.21417236328125	2	435.269419	868.524284	0.23662	0.00010299	-0.62435	-0.00027176	-0.38773	-0.00016877	435.2689830666612	39.634	0.74438	36.685	36.373	37.118	-2.9485					37	14	3	0	0	0	0.028476	1	1631	1631		18.324	5.3652	1	317580	+		25331	15584	20736	20760	28128	28128					0.08476330574080748
KPADLLWDT	9	Unmodified	_KPADLLWDT_					0	0	0			REV__nc|ENSG00000159082|O43426-4|SYNJ1	REV__nc|ENSG00000159082|O43426-4|SYNJ1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.3250732421875	2	529.779482	1057.54441	0.091269	4.8352E-05	-3.9328	-0.0020835	-3.8415	-0.0020351	529.7773100156137	37.26	0.29969	34.368	34.242	34.541	-2.8925					10	5	2	0	0	0	0.027462	1	1354	1354		20.947	8.7403	1	19239	+		25332	20592	20737	20761	28129	28129					0.017940367233677534
KPAEQTPLSAL	11	Unmodified	_KPAEQTPLSAL_					0	0	0		nc|ENSG00000128918|O94788-4|ALDH1A2;nc|ENSG00000128918|O94788-2|ALDH1A2;nc|ENSG00000128918|O94788-3|ALDH1A2;ENSG00000128918|ENST00000249750|ALDH1A2;ALDH1A2|p.I332Sfs*6|1|0.05|ENSG00000128918|chr15:57963978-57963978|G/-|frameshift_variant;ENST00000560923.5_1_15:58283776-58287296:-|nuORF;tr|A0A553SSS4|A0A553SSS4_NIACIAldehydedehydrogenasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_03565PE=3SV=1	nc|ENSG00000128918|O94788-4|ALDH1A2	nc|ENSG00000128918|O94788-4|ALDH1A2	MULTI-MSMS	OvCa9_classI_Rep4_	4	577.8250122070312	2	577.824421	1153.63429	0.70593	0.0004079	-1.4533	-0.00083973	-0.74733	-0.00043182	577.8235029762275	86.198	1.4874	83.552	83.142	84.629	-2.6463					55	29	2	0	0	0	0.29406	2	7294	7281;7294		68.846	15.757	1	660940			25333	3913	20738	20762	28130;28131	28131					0.06361666331963534
KPAEQTPLSAL	11	Unmodified	_KPAEQTPLSAL_					0	0	0		nc|ENSG00000128918|O94788-4|ALDH1A2;nc|ENSG00000128918|O94788-2|ALDH1A2;nc|ENSG00000128918|O94788-3|ALDH1A2;ENSG00000128918|ENST00000249750|ALDH1A2;ALDH1A2|p.I332Sfs*6|1|0.05|ENSG00000128918|chr15:57963978-57963978|G/-|frameshift_variant;ENST00000560923.5_1_15:58283776-58287296:-|nuORF;tr|A0A553SSS4|A0A553SSS4_NIACIAldehydedehydrogenasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_03565PE=3SV=1	nc|ENSG00000128918|O94788-4|ALDH1A2	nc|ENSG00000128918|O94788-4|ALDH1A2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	577.824421	1153.63429	-2.2177	-0.0012815	1.5328	0.00088567	-0.68496	-0.00039579	577.8253002993482	85.089	1.5834	83.542	83.053	84.636	-1.5462	0.042118	0.00050991	NaN	68.846	72	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	306090			25334	3913	20738	20762							0.06361666331963534
KPAEQTPLSAL	11	Unmodified	_KPAEQTPLSAL_					0	0	0		nc|ENSG00000128918|O94788-4|ALDH1A2;nc|ENSG00000128918|O94788-2|ALDH1A2;nc|ENSG00000128918|O94788-3|ALDH1A2;ENSG00000128918|ENST00000249750|ALDH1A2;ALDH1A2|p.I332Sfs*6|1|0.05|ENSG00000128918|chr15:57963978-57963978|G/-|frameshift_variant;ENST00000560923.5_1_15:58283776-58287296:-|nuORF;tr|A0A553SSS4|A0A553SSS4_NIACIAldehydedehydrogenasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_03565PE=3SV=1	nc|ENSG00000128918|O94788-4|ALDH1A2	nc|ENSG00000128918|O94788-4|ALDH1A2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	577.824421	1153.63429	-1.908	-0.0011025	1.3905	0.00080349	-0.51749	-0.00029902	577.825179387073	85.627	1.8521	83.407	82.888	84.74	-2.2204	-0.093349	0.00034555	NaN	68.846	85	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	674100			25335	3913	20738	20762							0.06361666331963534
KPAEYGYVSL	10	Unmodified	_KPAEYGYVSL_					0	0	0		nc|ENSG00000172216|P17676-2|CEBPB;ENSG00000172216|ENST00000303004|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	MULTI-MSMS	OvCa9_classI_Rep2	2	563.794189453125	2	563.792589	1125.57063	1.9225	0.0010839	-2.4477	-0.00138	-0.52524	-0.00029613	563.7910966326856	87.996	1.2748	86.58	86.155	87.43	-1.4156					83	25	4	0	0	0	0.18931	7	7697	7679;7685;7691;7697;7704;7710;7716		96.034	38.222	1	1009300			25336	7276	20739	20763	28132;28133;28134;28135;28136;28137;28138	28135					0.012863058948596517
KPAEYGYVSL	10	Unmodified	_KPAEYGYVSL_					0	0	0		nc|ENSG00000172216|P17676-2|CEBPB;ENSG00000172216|ENST00000303004|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	MULTI-MSMS	OvCa9_classI_Rep3	3	563.7943115234375	2	563.792589	1125.57063	-0.62466	-0.00035218	0.15204	8.5721E-05	-0.47262	-0.00026646	563.7925964248433	88.714	1.1745	86.583	86.214	87.388	-2.1309					84	23	5	0	0	0	0.11632	8	5431	5400;5406;5412;5418;5424;5431;5437;5444		109.48	29.158	1	2289600			25337	7276	20739	20763	28139;28140;28141;28142;28143;28144;28145;28146	28144					0.012863058948596517
KPAEYGYVSL	10	Unmodified	_KPAEYGYVSL_					0	0	0		nc|ENSG00000172216|P17676-2|CEBPB;ENSG00000172216|ENST00000303004|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.7937622070312	2	563.792589	1125.57063	1.1252	0.0006344	-1.5605	-0.00087979	-0.43526	-0.0002454	563.7915876917513	89.184	1.1349	86.581	86.237	87.371	-2.6027					78	22	5	0	0	0	0.12738	3	7638	7626;7638;7650		106.68	40.254	1	2005100			25338	7276	20739	20763	28147;28148;28149	28148					0.012863058948596517
KPAFFAEKL	9	Unmodified	_KPAFFAEKL_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000495713.5_1_9:75775181-75782501:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	OvCa9_classI_Rep2	2	525.8026733398438	2	525.80276	1049.59097	0.20444	0.00010749	-1.4558	-0.00076546	-1.2514	-0.00065796	525.8019562022189	79.838	3.0974	78.143	77.19	80.288	-1.6951					181	60	5	0	0	0	0.014158	13	6717	6703;6707;6712;6717;6723;6729;6735;6741;6747;6754;6760;6766;6775		155.58	52.773	1	3482200			25339	4351	20740	20764	28150;28151;28152;28153;28154;28155;28156;28157;28158;28159;28160;28161;28162	28153					0.06815521345333764
KPAFFAEKL	9	Unmodified	_KPAFFAEKL_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000495713.5_1_9:75775181-75782501:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	OvCa9_classI_Rep3	3	525.8035278320312	2	525.80276	1049.59097	-0.60669	-0.000319	-0.25033	-0.00013163	-0.85703	-0.00045063	525.8025876765724	80.4	2.8737	78.077	77.629	80.503	-2.3226					172	56	5	0	0	0	0.010153	18	4421	4383;4388;4392;4398;4403;4409;4415;4421;4427;4433;4439;4446;4453;4460;4466;4472;4478;4485		168.26	75.115	1	3738500			25340	4351	20740	20764	28163;28164;28165;28166;28167;28168;28169;28170;28171;28172;28173;28174;28175;28176;28177;28178;28179;28180	28170					0.06815521345333764
KPAFFAEKL	9	Unmodified	_KPAFFAEKL_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000495713.5_1_9:75775181-75782501:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.803466796875	2	525.80276	1049.59097	-1.3591	-0.00071462	0.35247	0.00018533	-1.0066	-0.00052929	525.802905054093	80.787	2.8213	78.077	77.665	80.486	-2.7106					170	57	5	0	0	0	0.027568	8	6601	6591;6601;6613;6625;6637;6650;6662;6676		138.06	42.48	1	4284200			25341	4351	20740	20764	28181;28182;28183;28184;28185;28186;28187;28188	28182					0.06815521345333764
KPAFFAEKL	9	Unmodified	_KPAFFAEKL_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000495713.5_1_9:75775181-75782501:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	525.80276	1049.59097	1.6311	0.00085765	-3.8735	-0.0020367	-2.2424	-0.001179	525.8004258871568	78.074	0.40988	78.074	77.884	78.294	0	-0.01894	-0.0034351	NaN	168.26	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	282780			25342	4351	20740	20764							0.06815521345333764
KPAFFTQLN	9	Unmodified	_KPAFFTQLN_					0	0	0		tr|A0A7D7ACP7|A0A7D7ACP7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20125PE=4SV=1	tr|A0A7D7ACP7|A0A7D7ACP7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20125PE=4SV=1	tr|A0A7D7ACP7|A0A7D7ACP7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20125PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.7877197265625	2	533.290017	1064.56548	-1.7455	-0.00093087	1.8276	0.00097464	0.082086	4.3776E-05	533.2907319767213	103.79	0.50926	103.79	103.43	103.94	0					21	11	2	0	0	0	0.027462	1	11615	11615		37.159	0	1	4032100			25343	36232	20741	20765	28189	28189					0.03578046822917713
KPAGPPGILAL	11	Unmodified	_KPAGPPGILAL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.A1773Sfs*19|1|0.04|ENSG00000100345|chr22:36285287-36285288|-/T|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3231811523438	2	517.32386	1032.63317	-0.51991	-0.00026896	-0.28143	-0.00014559	-0.80135	-0.00041456	517.3237144265391	103.88	2.5281	103.3	102.88	105.41	-0.57639					141	50	4	0	0	0	0.067687	13	9603	9587;9592;9597;9603;9609;9615;9621;9627;9634;9640;9654;9661;9667		104.75	51.81	1	3512100			25344	2050	20742	20766	28190;28191;28192;28193;28194;28195;28196;28197;28198;28199;28200;28201;28202	28193					0.11815496753706611
KPAGPPGILAL	11	Unmodified	_KPAGPPGILAL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.A1773Sfs*19|1|0.04|ENSG00000100345|chr22:36285287-36285288|-/T|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OvCa9_classI_Rep3	3	517.3243408203125	2	517.32386	1032.63317	0.92092	0.00047641	-1.7104	-0.00088481	-0.78945	-0.0004084	517.3229495347538	104.69	2.5463	103.25	102.81	105.36	-1.4347					145	48	4	0	0	0	0.048205	12	7306	7295;7300;7306;7312;7318;7324;7330;7336;7342;7348;7355;7361		116.9	62.127	1	4143600			25345	2050	20742	20766	28203;28204;28205;28206;28207;28208;28209;28210;28211;28212;28213;28214	28205					0.11815496753706611
KPAGPPGILAL	11	Unmodified	_KPAGPPGILAL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.A1773Sfs*19|1|0.04|ENSG00000100345|chr22:36285287-36285288|-/T|frameshift_variant;nc|ENSG00000100345|P35579-2|MYH9	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.323486328125	2	517.32386	1032.63317	-0.42673	-0.00022076	-0.57604	-0.000298	-1.0028	-0.00051876	517.3235491607991	105.41	2.6032	103.4	102.95	105.55	-2.0161					144	50	4	0	0	0	0.078771	7	9572	9548;9560;9572;9584;9596;9608;9634		101.6	57.07	1	3949100			25346	2050	20742	20766	28215;28216;28217;28218;28219;28220;28221	28217					0.11815496753706611
KPAGQQPRVL	10	Unmodified	_KPAGQQPRVL_					0	0	0		nc|ENSG00000143514|Q13625-2|TP53BP2;nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2	nc|ENSG00000143514|Q13625-2|TP53BP2	nc|ENSG00000143514|Q13625-2|TP53BP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.7732543945312	2	547.327465	1092.64038	-0.53477	-0.0002927	-0.9692	-0.00053047	-1.504	-0.00082317	547.3267966797712	49.186	0.25602	49.186	49.031	49.287	0					7	5	2	0	0	0	0.027088	1	3650	3650		19.997	10.814	1	171170			25347	5066	20743	20767	28222	28222					0.0977622935411091
KPAIPPKSP	9	Unmodified	_KPAIPPKSP_					0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.7894287109375	2	467.789653	933.564752	-0.84076	-0.0003933	0.078534	3.6737E-05	-0.76222	-0.00035656	467.7896725567256	44.78	2.7892	41.741	41.258	44.047	-3.0385					154	53	5	0	0	0	0.48324	1	2357	2357		44.117	1.6423	1	2362000	+		25348	22589	20744	20768	28223	28223					0.09531252173837856
KPAITAVEVA	10	Unmodified	_KPAITAVEVA_					0	0	0		ENST00000451728.6_2_3:128889931-128890333:-|nuORF;ENST00000446936.6_1_3:128889931-128890333:-|nuORF	ENST00000451728.6_2_3:128889931-128890333:-|nuORF	ENST00000451728.6_2_3:128889931-128890333:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	499.7959899902344	2	499.797675	997.580796	1.2387	0.00061911	-4.4901	-0.0022442	-3.2514	-0.001625	499.7951854889041	28.84	1.0646	26.13	25.716	26.781	-2.7097					46	22	4	0	0	0	0.74374	1	647	647		25.574	1.0549	1	100180			25349	11999	20745	20769	28224	28224					0.08190913620080664
KPAITNNKT	9	Unmodified	_KPAITNNKT_					0	0	0			REV__ENSG00000167522|ENST00000301030|ANKRD11	REV__ENSG00000167522|ENST00000301030|ANKRD11	MULTI-MSMS	OvCa9_classI_Rep2	2	493.7845764160156	2	493.785099	985.555644	1.4093	0.00069587	-1.7511	-0.00086466	-0.34184	-0.00016879	493.78415838053036	41.942	1.876	39.232	38.832	40.708	-2.7097					88	37	4	0	0	0	0.51865	1	2274	2274		40.778	2.9666	1	1028200	+		25350	21284	20746	20770	28225	28225					0.062288588175078985
KPAKPQPKL	9	Unmodified	_KPAKPQPKL_					0	0	0		ENSG00000185728|ENST00000539294|YTHDF3	ENSG00000185728|ENST00000539294|YTHDF3	ENSG00000185728|ENST00000539294|YTHDF3	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.82379150390625	2	503.824027	1005.6335	0.44961	0.00022653	-0.46525	-0.0002344	-0.015635	-7.8773E-06	503.8236889320676	35.498	0.99814	32.649	32.391	33.389	-2.849					43	19	3	0	0	0	0.24951	3	1144	1144;1154;1169		68.787	6.4687	1	114590			25351	8277	20747	20771	28226;28227;28228	28226					0.13090916473549896
KPAKTQKTSL	10	Unmodified	_KPAKTQKTSL_					0	0	0		ENSG00000143248|ENST00000313961|RGS5;nc|ENSG00000143248|O15539-3|RGS5	ENSG00000143248|ENST00000313961|RGS5	ENSG00000143248|ENST00000313961|RGS5	MULTI-MSMS	OvCa9_classI_Rep2	2	551.3350830078125	2	551.334956	1100.65536	2.0943	0.0011547	-2.1659	-0.0011941	-0.071538	-3.9442E-05	551.3336589332715	29.013	0.78313	26.304	26.096	26.88	-2.7097					37	16	3	0	0	0	0.36605	4	656	654;656;662;676		72.879	24.92	1	112050			25352	5025	20748	20772	28229;28230;28231;28232	28230					0.1090567643148006
KPALELLHYLK	11	Unmodified	_KPALELLHYLK_					0	0	0		ENST00000496863.5_1_1:155679570-155695280:+|nuORF;ENST00000471523.1_1_1:155679570-155695881:+|nuORF;ENST00000462002.5_1_1:155679570-155696073:+|nuORF;nc|ENSG00000132676|P51398-2|DAP3;nc|ENSG00000132676|P51398-3|DAP3;ENSG00000132676|ENST00000368336|DAP3	ENST00000496863.5_1_1:155679570-155695280:+|nuORF	ENST00000496863.5_1_1:155679570-155695280:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	441.78533935546875	3	442.271096	1323.79146	-0.3503	-0.00015493	2.7082	0.0011977	2.3579	0.0010428	442.6069423703181	21.075	0.87146	19.736	19.5	20.371	-1.3386					37	17	3	0	0	0	0.025908	1	196	196		16.53	7.7305	1	46262			25353	4160	20749	20773	28233	28233					0.1425137094213369
KPALFNVL	8	Unmodified	_KPALFNVL_					0	0	0		nc|ENSG00000185630|P40424-2|PBX1;nc|ENSG00000185630|P40424-3|PBX1;ENSG00000185630|ENST00000420696|PBX1	nc|ENSG00000185630|P40424-2|PBX1	nc|ENSG00000185630|P40424-2|PBX1	MULTI-MSMS	OvCa9_classI_Rep2	2	451.2786560058594	2	451.278921	900.543289	2.3933	0.00108	-2.6216	-0.0011831	-0.22834	-0.00010304	451.277592402024	110.6	2.0227	110.43	110.06	112.08	-0.17237					101	40	4	0	0	0	0.37872	8	10413	10403;10407;10413;10425;10431;10444;10450;10465		92.191	34.379	1	1089100			25354	8271	20750	20774	28234;28235;28236;28237;28238;28239;28240;28241	28236					0.08903867145113509
KPALFNVL	8	Unmodified	_KPALFNVL_					0	0	0		nc|ENSG00000185630|P40424-2|PBX1;nc|ENSG00000185630|P40424-3|PBX1;ENSG00000185630|ENST00000420696|PBX1	nc|ENSG00000185630|P40424-2|PBX1	nc|ENSG00000185630|P40424-2|PBX1	MULTI-MSMS	OvCa9_classI_Rep3	3	451.27825927734375	2	451.278921	900.543289	1.6818	0.00075895	-1.7921	-0.00080876	-0.11036	-4.9804E-05	451.2780132354674	111.71	1.8717	110.61	110.2	112.07	-1.1038					111	37	4	0	0	0	0.39692	8	8116	8106;8110;8116;8122;8128;8141;8153;8161		88.643	30.832	1	1060800			25355	8271	20750	20774	28242;28243;28244;28245;28246;28247;28248;28249	28244					0.08903867145113509
KPALFNVL	8	Unmodified	_KPALFNVL_					0	0	0		nc|ENSG00000185630|P40424-2|PBX1;nc|ENSG00000185630|P40424-3|PBX1;ENSG00000185630|ENST00000420696|PBX1	nc|ENSG00000185630|P40424-2|PBX1	nc|ENSG00000185630|P40424-2|PBX1	MULTI-MSMS	OvCa9_classI_Rep4_	4	451.2787170410156	2	451.278921	900.543289	0.9517	0.00042948	-1.2851	-0.00057994	-0.33341	-0.00015046	451.27828212128196	112.17	1.7679	110.66	110.32	112.08	-1.5111					105	34	4	0	0	0	0.47599	5	10370	10346;10370;10383;10397;10416		79.939	20.042	1	1261800			25356	8271	20750	20774	28250;28251;28252;28253;28254	28251					0.08903867145113509
KPALFSVL	8	Unmodified	_KPALFSVL_					0	0	0		ENST00000478678.5_1_6:32154995-32157692:-|nuORF;nc|ENSG00000167081|P40426-2|PBX3;nc|ENSG00000167081|P40426-5|PBX3;ENSG00000204304|ENST00000375050|PBX2;ENSG00000167081|ENST00000373489|PBX3;ENST00000497091.1_1_9:128509732-128559720:+|nuORF;ENSG00000105717|ENST00000251203|PBX4	ENST00000478678.5_1_6:32154995-32157692:-|nuORF	ENST00000478678.5_1_6:32154995-32157692:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	437.77398681640625	2	437.773471	873.53239	0.98931	0.00043309	-1.0022	-0.00043874	-0.012897	-5.6462E-06	437.7728834128316	113.77	1.1313	112.69	112.35	113.48	-1.0753					63	21	4	0	0	0	0.36941	1	8390	8390		94.006	28.203	1	207720			25357	6750	20751	20775	28255	28255					0.09056464770844741
KPALFSVL	8	Unmodified	_KPALFSVL_					0	0	0		ENST00000478678.5_1_6:32154995-32157692:-|nuORF;nc|ENSG00000167081|P40426-2|PBX3;nc|ENSG00000167081|P40426-5|PBX3;ENSG00000204304|ENST00000375050|PBX2;ENSG00000167081|ENST00000373489|PBX3;ENST00000497091.1_1_9:128509732-128559720:+|nuORF;ENSG00000105717|ENST00000251203|PBX4	ENST00000478678.5_1_6:32154995-32157692:-|nuORF	ENST00000478678.5_1_6:32154995-32157692:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	437.7734375	2	437.773471	873.53239	0.82511	0.00036121	-0.71939	-0.00031493	0.10572	4.628E-05	437.77302640897346	114.15	1.3423	112.71	112.43	113.77	-1.4461					66	25	4	0	0	0	0.42208	2	10594	10594;10619		85.359	22.053	1	209190			25358	6750	20751	20775	28256;28257	28256					0.09056464770844741
KPALFSVL	8	Unmodified	_KPALFSVL_					0	0	0		ENST00000478678.5_1_6:32154995-32157692:-|nuORF;nc|ENSG00000167081|P40426-2|PBX3;nc|ENSG00000167081|P40426-5|PBX3;ENSG00000204304|ENST00000375050|PBX2;ENSG00000167081|ENST00000373489|PBX3;ENST00000497091.1_1_9:128509732-128559720:+|nuORF;ENSG00000105717|ENST00000251203|PBX4	ENST00000478678.5_1_6:32154995-32157692:-|nuORF	ENST00000478678.5_1_6:32154995-32157692:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	437.773471	873.53239	1.3987	0.0006123	-1.1959	-0.00052354	0.20274	8.8756E-05	437.77280699376075	112.67	1.1842	112.55	112.28	113.46	-0.12174	-0.09959	-0.0002102	NaN	94.006	57	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194650			25359	6750	20751	20775							0.09056464770844741
KPALSFLFLSN	11	Unmodified	_KPALSFLFLSN_					0	0	0		ENSG00000069943|ENST00000164305|PIGB	ENSG00000069943|ENST00000164305|PIGB	ENSG00000069943|ENST00000164305|PIGB	MULTI-MSMS	OvCa9_classI_Rep4_	4	618.8526000976562	2	618.852981	1235.69141	-0.21745	-0.00013457	-3.4717	-0.0021485	-3.6892	-0.002283	618.8507851050184	62.444	1.1223	58.987	58.667	59.789	-3.4577					51	22	3	0	0	0	0.21275	1	4336	4336		78.264	12.986	1	452310			25360	1410	20752	20776	28258	28258					0.08299133608329612
KPALSFLFLSN	11	Unmodified	_KPALSFLFLSN_					0	0	0		ENSG00000069943|ENST00000164305|PIGB	ENSG00000069943|ENST00000164305|PIGB	ENSG00000069943|ENST00000164305|PIGB	MULTI-MATCH	OvCa9_classI_Rep2	2		2	618.852981	1235.69141	-1.939	-0.0011999	-1.575	-0.00097468	-3.5139	-0.0021746	618.8518506334468	61.562	1.2213	58.803	58.361	59.582	-2.7593	-0.091799	0.0012689	NaN	78.264	52	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135670			25361	1410	20752	20776							0.08299133608329612
KPAPKNEDEM	10	Oxidation (M)	_KPAPKNEDEM(Oxidation (M))_		KPAPKNEDEM(1)		KPAPKNEDEM(66)	0	0	1		ENSG00000088930|ENST00000377191|XRN2	ENSG00000088930|ENST00000377191|XRN2	ENSG00000088930|ENST00000377191|XRN2	MULTI-MSMS	OvCa99_classI_Rep5	1	587.7747192382812	2	587.774071	1173.53359	1.0004	0.00058803	1.8961	0.0011145	2.8965	0.0017025	587.775024719606	80.975	0.58549	80.975	80.744	81.329	0					27	13	3	0	0	0	0.41408	1	8324	8324		66.429	9.7082	1	1738400			25362	1799	20753	20777	28259	28259		65			-0.04623733713242473
KPAPPPQV	8	Unmodified	_KPAPPPQV_					0	0	0		nc|ENSG00000110713|P52948-4|NUP98;nc|ENSG00000110713|P52948-3|NUP98	nc|ENSG00000110713|P52948-4|NUP98	nc|ENSG00000110713|P52948-4|NUP98	MULTI-SECPEP	OvCa99_classI_Rep5	1	417.20916748046875	2	417.247621	832.480688	0.24734	0.0001032	-1.1361	-0.00047404	-0.88877	-0.00037084	417.24694322443224	43.281	0.37819	43.281	43.1	43.478	0					13	8	2	0	0	0	0.028476	1	2844	2844		35.201	0	1	71493			25363	14955	20754	20778	28260	28260					0.05774721076943479
KPAPRKQIL	9	Unmodified	_KPAPRKQIL_					0	0	0		ENST00000528758.1_1_11:7507087-7531416:+|nuORF;ENSG00000183801|ENST00000329293|OLFML1	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.8436279296875	2	525.842751	1049.67095	-0.2831	-0.00014886	-0.041483	-2.1813E-05	-0.32458	-0.00017068	525.8425830827058	38.419	1.2392	35.492	35.156	36.395	-2.9264					59	24	3	0	0	0	0.62352	1	1497	1497		29.15	7.1897	1	167030			25364	8108	20755	20779	28261	28261					0.1481000773917458
KPAPRKQIL	9	Unmodified	_KPAPRKQIL_					0	0	0		ENST00000528758.1_1_11:7507087-7531416:+|nuORF;ENSG00000183801|ENST00000329293|OLFML1	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	525.842751	1049.67095	-1.5987	-0.00084069	1.4288	0.00075132	-0.16995	-8.9369E-05	525.8433000252572	38.339	0.99047	35.629	35.37	36.36	-2.7097	0.068327	0.0011344	NaN	29.15	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79843			25365	8108	20755	20779							0.1481000773917458
KPAQHVQAL	9	Unmodified	_KPAQHVQAL_					0	0	0		TEP1|p.P1636Cfs*29|1|0.07|ENSG00000129566|chr14:20380332-20380333|-/CA|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;ENST00000557627.1_1_14:20869071-20871634:-|nuORF	TEP1|p.P1636Cfs*29|1|0.07|ENSG00000129566|chr14:20380332-20380333|-/CA|frameshift_variant	TEP1|p.P1636Cfs*29|1|0.07|ENSG00000129566|chr14:20380332-20380333|-/CA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.28717041015625	2	496.287808	990.561064	-0.72337	-0.000359	0.5639	0.00027985	-0.15948	-7.9147E-05	496.28780630824957	40.455	1.0467	37.501	37.315	38.362	-2.9541					32	19	2	0	0	0	0.091859	1	1744	1744		99.375	39.081	1	230660			25366	3936	20756	20780	28262	28262					0.06540582399975392
KPAQHVQAL	9	Unmodified	_KPAQHVQAL_					0	0	0		TEP1|p.P1636Cfs*29|1|0.07|ENSG00000129566|chr14:20380332-20380333|-/CA|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;ENST00000557627.1_1_14:20869071-20871634:-|nuORF	TEP1|p.P1636Cfs*29|1|0.07|ENSG00000129566|chr14:20380332-20380333|-/CA|frameshift_variant	TEP1|p.P1636Cfs*29|1|0.07|ENSG00000129566|chr14:20380332-20380333|-/CA|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	496.287808	990.561064	-0.028096	-1.3944E-05	0.076385	3.7909E-05	0.048289	2.3965E-05	496.2875649666388	40.243	0.74183	37.533	37.302	38.044	-2.7097	0.016106	-0.00020573	NaN	99.375	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47433			25367	3936	20756	20780							0.06540582399975392
KPASFMTSI	9	Oxidation (M)	_KPASFM(Oxidation (M))TSI_		KPASFM(1)TSI		KPASFM(93)TSI	0	0	1		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.2555236816406	2	499.254785	996.495018	-1.0151	-0.00050681	1.2715	0.00063478	0.25633	0.00012797	499.25515882848566	70.165	1.2103	66.684	66.393	67.603	-3.4812					73	24	4	0	0	0	0.1149	1	5289	5289		93.143	37.639	1	690270			25368	4070	20757	20781	28263	28263		124			-0.0033699455705118453
KPASFMTSI	9	Oxidation (M)	_KPASFM(Oxidation (M))TSI_					0	0	1		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MATCH	OvCa9_classI_Rep2	2		2	499.254785	996.495018	-0.79619	-0.0003975	0.93249	0.00046555	0.1363	6.8049E-05	499.25505451540596	69.296	1.3458	66.676	66.167	67.513	-2.6203	-0.0041979	-0.00011782	NaN	93.143	60	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175280			25369	4070	20757	20781				124			-0.0033699455705118453
KPASFMTSI	9	Unmodified	_KPASFMTSI_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	OvCa9_classI_Rep4_	4	491.2550964355469	2	491.257328	980.500103	-1.4164	-0.00069584	1.227	0.00060278	-0.18943	-9.3058E-05	491.2578621280451	88.612	0.94868	86.009	85.679	86.628	-2.6027					35	18	3	0	0	0	0.1944	1	7569	7569		77.318	16.346	1	468800			25370	4070	20757	20782	28264	28264					0.009073093055576464
KPASFMTSI	9	Unmodified	_KPASFMTSI_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MATCH	OvCa9_classI_Rep2	2		2	491.257328	980.500103	1.7479	0.00085866	-2.5189	-0.0012374	-0.77103	-0.00037877	491.25624792511144	87.386	1.0841	85.955	85.543	86.627	-1.4311	-0.030491	-0.0031695	NaN	77.318	52	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271850			25371	4070	20757	20782							0.009073093055576464
KPASFMTSI	9	Unmodified	_KPASFMTSI_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MATCH	OvCa9_classI_Rep3	3		2	491.257328	980.500103	-0.88912	-0.00043679	0.96041	0.00047181	0.07129	3.5022E-05	491.2577271117684	88.124	1.1134	85.993	85.493	86.607	-2.1309	0.0069283	0.00024897	NaN	77.318	41	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	355910			25372	4070	20757	20782							0.009073093055576464
KPASHKHF	8	Unmodified	_KPASHKHF_					0	0	0			REV__ENSG00000108622|ENST00000579788|ICAM2	REV__ENSG00000108622|ENST00000579788|ICAM2	MULTI-MSMS	OvCa99_classI_Rep5	1	476.2624206542969	2	476.261594	950.508634	1.059	0.00050434	3.6274	0.0017276	4.6863	0.0022319	476.26317187557686	157.12	1.161	157.12	156.85	158.01	0					51	22	4	0	0	0	0.75427	1	18399	18399		24.519	0.31644	1	703630	+		25373	17898	20758	20783	28265	28265					0.031400440570337196
KPATKTAEL	9	Unmodified	_KPATKTAEL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	OvCa9_classI_Rep2	2	479.78143310546875	2	479.782025	957.549496	-2.9508	-0.0014157	2.92	0.001401	-0.030781	-1.4768E-05	479.78329356454816	36.627	0.98598	33.918	33.548	34.534	-2.7097					53	19	4	0	0	0	0.14855	3	1587	1571;1581;1587		85.161	11.186	1	381500			25374	5987	20759	20784	28266;28267;28268	28268					0.06902340585986622
KPATSTQWKMK	11	Unmodified	_KPATSTQWKMK_					0	0	0			REV__tr|A0A553SMK2|A0A553SMK2_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_22725PE=4SV=1	REV__tr|A0A553SMK2|A0A553SMK2_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_22725PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	436.21435546875	3	435.904307	1304.69109	0.24788	0.00010805	-2.6714	-0.0011645	-2.4236	-0.0010564	435.90284752512736	33.644	0.82623	33.644	33.335	34.161	0					22	16	2	0	0	0	0.025904	1	1597	1597		30.139	3.3894	1	20212	+		25375	30340	20760	20785	28269	28269					0.05093390616798388
KPATSYVRTTI	11	Unmodified	_KPATSYVRTTI_					0	0	0		ENST00000464124.2_1_5:124144562-124144799:-|nuORF;ENSG00000108107|ENST00000344063|RPL28;nc|ENSG00000108107|P46779-2|RPL28;nc|ENSG00000108107|P46779-3|RPL28	ENST00000464124.2_1_5:124144562-124144799:-|nuORF	ENST00000464124.2_1_5:124144562-124144799:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	618.852783203125	2	618.85097	1235.68739	-0.21745	-0.00013457	-0.22155	-0.00013711	-0.439	-0.00027168	618.8507851050184	62.444	1.1223	58.987	58.667	59.789	-3.4577					51	22	3	0	0	0	0.33736	1	4348	4348		74.165	8.6996	1	452310			25376	2638	20761	20786	28270	28270					0.07897044114588425
KPAWAYIE	8	Unmodified	_KPAWAYIE_					0	0	0			REV__nc|ENSG00000154310|Q9UKE5-6|TNIK;REV__ENST00000459881.1_1_3:170784284-170789158:-|nuORF	REV__nc|ENSG00000154310|Q9UKE5-6|TNIK	MULTI-SECPEP	OvCa9_classI_Rep4_	4	489.2939147949219	2	489.258185	976.501818	0.42358	0.00020724	-4.2129	-0.0020612	-3.7893	-0.0018539	489.2559908710739	60.967	1.0314	57.537	57.194	58.225	-3.43					38	20	2	0	0	0	0.028476	1	4180	4180		55.504	7.8469	1	147780	+		25377	20378;26069	20762	20787	28271	28271					0.012626863857803983
KPCKNLIVD	9	Unmodified	_KPCKNLIVD_					0	0	0		tr|A0A7D6ZZ78|A0A7D6ZZ78_9CLOTYgiQfamilyradicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05060PE=3SV=1	tr|A0A7D6ZZ78|A0A7D6ZZ78_9CLOTYgiQfamilyradicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05060PE=3SV=1	tr|A0A7D6ZZ78|A0A7D6ZZ78_9CLOTYgiQfamilyradicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05060PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.8168334960938	2	515.291702	1028.56885	-0.48839	-0.00025166	-0.092348	-4.7586E-05	-0.58074	-0.00029925	515.2907201570873	47.735	1.0436	47.735	46.985	48.028	0					29	23	2	0	0	0	0.027462	1	3444	3444		37.159	3.6435	1	144040			25378	35948	20763	20788	28272	28272					0.05570973605267682
KPCRGLSLATK	11	Unmodified	_KPCRGLSLATK_					0	0	0			REV__nc|ENSG00000249139|O95925-2|EPPIN	REV__nc|ENSG00000249139|O95925-2|EPPIN	MULTI-MSMS	OvCa9_classI_Rep4_	4	587.3406982421875	2	587.342258	1172.66996	-0.087965	-5.1665E-05	-3.2943	-0.0019349	-3.3823	-0.0019866	587.3401785953889	38.596	1.636	35.67	35.106	36.742	-2.9264					64	32	3	0	0	0	0.41656	1	1517	1517		59.931	3.497	1	168580	+		25379	29168	20764	20789	28273	28273					0.09053425307956786
KPCRGLSLATK	11	Unmodified	_KPCRGLSLATK_					0	0	0			REV__nc|ENSG00000249139|O95925-2|EPPIN	REV__nc|ENSG00000249139|O95925-2|EPPIN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	587.342258	1172.66996	-1.7386	-0.0010211	-1.3292	-0.00078071	-3.0678	-0.0018019	587.341412167195	38.369	1.2376	35.659	35.37	36.607	-2.7097	-0.0051859	0.00093695	NaN	59.931	46	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56139	+		25380	29168	20764	20789							0.09053425307956786
KPCRGLSLATK	11	Unmodified	_KPCRGLSLATK_					0	0	0			REV__nc|ENSG00000249139|O95925-2|EPPIN	REV__nc|ENSG00000249139|O95925-2|EPPIN	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	587.342258	1172.66996	-0.087965	-5.1665E-05	-3.2943	-0.0019349	-3.3823	-0.0019866	587.3401785953889	38.596	1.636	35.67	35.106	36.742	-2.9264	0.0051859	-0.0013714	NaN	59.931	64	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168580	+		25381	29168	20764	20789							0.09053425307956786
KPDEDLPSP	9	Unmodified	_KPDEDLPSP_					0	0	0		ENSG00000106571|ENST00000395925|GLI3	ENSG00000106571|ENST00000395925|GLI3	ENSG00000106571|ENST00000395925|GLI3	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.73529052734375	2	499.245472	996.476391	2.2326	0.0011146	0.8316	0.00041517	3.0642	0.0015298	499.24498669261794	76.099	0.40932	76.099	75.956	76.365	0					13	9	2	0	0	0	0.027448	1	7643	7643		35.618	0	1	106390			25382	2562	20765	20790	28274	28274					-0.021988329272971896
KPDIVRIN	8	Unmodified	_KPDIVRIN_					0	0	0			REV__tr|A0A7D7A0Y4|A0A7D7A0Y4_9CLOTProteinkinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05200PE=4SV=1	REV__tr|A0A7D7A0Y4|A0A7D7A0Y4_9CLOTProteinkinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05200PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.7518615722656	2	477.790184	953.565815	-0.86794	-0.0004147	0.20043	9.5763E-05	-0.66752	-0.00031893	477.7899814895454	50.767	0.66236	47.594	47.36	48.022	-3.1734					24	12	3	0	0	0	0.028476	1	2965	2965		15.642	8.9063	1	74461	+		25383	32461	20766	20791	28275	28275					0.08717466542736929
KPDLDKVISLK	11	Unmodified	_KPDLDKVISLK_					0	0	0		ENST00000492171.1_1_3:100096542-100100595:-|nuORF;ENSG00000154174|ENST00000284320|TOMM70	ENST00000492171.1_1_3:100096542-100100595:-|nuORF	ENST00000492171.1_1_3:100096542-100100595:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	628.3824462890625	2	628.384645	1254.75474	-4.0512	-0.0025457	0.66972	0.00042084	-3.3814	-0.0021248	628.3849132400738	150.53	4.7174	149.58	148	152.71	-0.95647					178	94	2	0	0	0	0.71498	1	12891	12891		24.519	0	1	419100			25384	5717	20767	20792	28276	28276					0.1375507432555878
KPDPLIHVI	9	Unmodified	_KPDPLIHVI_					0	0	0		ZNF507|p.S166Rfs*9|1|0.07|ENSG00000168813|chr19:32353326-32353329|AGCC/-|frameshift_variant;nc|ENSG00000168813|Q8TCN5-2|ZNF507;ENSG00000168813|ENST00000355898|ZNF507	ZNF507|p.S166Rfs*9|1|0.07|ENSG00000168813|chr19:32353326-32353329|AGCC/-|frameshift_variant	ZNF507|p.S166Rfs*9|1|0.07|ENSG00000168813|chr19:32353326-32353329|AGCC/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	516.3131713867188	2	516.316035	1030.61752	-5.397	-0.0027865	1.4148	0.00073048	-3.9822	-0.0020561	516.3166994253895	156.49	2.0589	155.32	154.75	156.81	-1.1707					101	49	4	0	0	0	0.67509	1	13442	13442		23.042	1.0826	1	710990			25385	6945	20768	20793	28277	28277					0.10343210236646883
KPDPSQKQ	8	Unmodified	_KPDPSQKQ_					0	0	0		CON__P31096	CON__P31096	CON__P31096	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.72760009765625	2	464.248349	926.482145	-0.044738	-2.077E-05	0.27803	0.00012907	0.23329	0.0001083	464.2482966612374	30.508	0.69394	30.508	30.334	31.027	0					19	13	3	0	0	0	0.028476	1	1160	1160		25.574	3.6142	1	81090		+	25386	628	20769	20794	28278	28278					0.015963103750436858
KPDWGQTFTPC	11	Unmodified	_KPDWGQTFTPC_					0	0	0		ENST00000414423.6_1_1:224577357-224577483:-|nuORF	ENST00000414423.6_1_1:224577357-224577483:-|nuORF	ENST00000414423.6_1_1:224577357-224577483:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	426.2644958496094	3	427.197379	1278.57031	-0.44389	-0.00018963	-0.31511	-0.00013462	-0.759	-0.00032424	427.19713816776465	40.821	1.3527	37.866	37.527	38.88	-2.9541					47	25	3	0	0	0	0.026068	1	1775	1775		21.78	3.2494	1	88173			25387	11578	20770	20795	28279	28279					-0.05783437096624766
KPDWGQTFTPC	11	Unmodified	_KPDWGQTFTPC_					0	0	0		ENST00000414423.6_1_1:224577357-224577483:-|nuORF	ENST00000414423.6_1_1:224577357-224577483:-|nuORF	ENST00000414423.6_1_1:224577357-224577483:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	427.197379	1278.57031	0.036349	1.5528E-05	-0.64074	-0.00027372	-0.6044	-0.0002582	427.19704697630107	40.752	0.78756	38.043	37.7	38.487	-2.7097	0.088072	-0.00030104	NaN	21.78	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23713			25388	11578	20770	20795							-0.05783437096624766
KPEAAILHLF	10	Unmodified	_KPEAAILHLF_					0	0	0		ENST00000389735.7_1_3:129009583-129017204:+|nuORF	ENST00000389735.7_1_3:129009583-129017204:+|nuORF	ENST00000389735.7_1_3:129009583-129017204:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	570.7803344726562	2	569.834591	1137.65463	-0.23056	-0.00013138	-3.3939	-0.001934	-3.6244	-0.0020653	569.832519459157	92.749	1.0781	91.581	91.288	92.366	-1.168					39	20	3	0	0	0	0.026659	1	8257	8257		64.207	14.766	1	174440			25389	11198	20771	20796	28280	28280					0.09130881782402867
KPECVDSGQTN	11	Unmodified	_KPECVDSGQTN_					0	0	0			REV__ENSG00000112486|ENST00000341935|CCR6	REV__ENSG00000112486|ENST00000341935|CCR6	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.3305053710938	2	589.261327	1176.5081	2.8953	0.0017061	1.3783	0.00081216	4.2736	0.0025183	589.2626296937931	89.549	0.74486	89.549	89.275	90.02	0					45	17	4	0	0	0	0.025767	1	9623	9623		30.569	19.982	1	605510	+		25390	18103	20772	20797	28281	28281					-0.07309208235642473
KPECVDSGQTN	11	Unmodified	_KPECVDSGQTN_					0	0	0			REV__ENSG00000112486|ENST00000341935|CCR6	REV__ENSG00000112486|ENST00000341935|CCR6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	589.261327	1176.5081	1.2127	0.00071459	-3.481	-0.0020512	-2.2683	-0.0013366	589.2592463112268	90.669	0.44681	89.367	89.176	89.622	-1.302	-0.091195	-0.0047232	NaN	30.569	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5976.1	+		25391	18103	20772	20797							-0.07309208235642473
KPECVDSGQTN	11	Unmodified	_KPECVDSGQTN_					0	0	0			REV__ENSG00000112486|ENST00000341935|CCR6	REV__ENSG00000112486|ENST00000341935|CCR6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	589.261327	1176.5081	-2.1444	-0.0012636	-0.3124	-0.00018409	-2.4568	-0.0014477	589.2607828597628	91.482	0.65884	89.458	89.18	89.839	-2.0241	0.00019764	-0.00098891	NaN	30.569	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14474	+		25392	18103	20772	20797							-0.07309208235642473
KPEDLYVR	8	Unmodified	_KPEDLYVR_					0	0	0		ENSG00000196208|ENST00000381486|GREB1;nc|ENSG00000196208|Q4ZG55-4|GREB1	ENSG00000196208|ENST00000381486|GREB1	ENSG00000196208|ENST00000381486|GREB1	MULTI-MSMS	OvCa9_classI_Rep3	3	510.2813720703125	2	510.279649	1018.54475	1.5054	0.00076817	1.6141	0.00082366	3.1195	0.0015918	510.28027552379746	62.202	1.7602	59.168	58.656	60.417	-3.0339					84	39	3	0	0	0	0.72896	1	2253	2253		37.159	2.9866	1	77332			25393	8577	20773	20798	28282	28282					0.03621456443227089
KPEELVGRR	9	Unmodified	_KPEELVGRR_					0	0	0		tr|A0A553SHI8|A0A553SHI8_NIACIMethionine--tRNAligaseOS=NialliacirculansOX=1397GN=metGPE=3SV=1	tr|A0A553SHI8|A0A553SHI8_NIACIMethionine--tRNAligaseOS=NialliacirculansOX=1397GN=metGPE=3SV=1	tr|A0A553SHI8|A0A553SHI8_NIACIMethionine--tRNAligaseOS=NialliacirculansOX=1397GN=metGPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	542.3182373046875	2	542.317097	1082.61964	0.10352	5.6142E-05	3.2841	0.001781	3.3877	0.0018372	542.3188254627427	43.05	1.4876	40.341	40.065	41.552	-2.7097					93	29	6	0	0	0	0.50149	1	2386	2386		42.396	0	1	511100			25394	33279	20774	20799	28283	28283					0.08163638974474452
KPEEQRKTL	9	Unmodified	_KPEEQRKTL_					0	0	0		ENSG00000134697|ENST00000373062|GNL2;ENST00000479255.1_1_1:38032458-38033975:-|nuORF	ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	MULTI-MSMS	OvCa9_classI_Rep2	2	564.8223876953125	2	564.822212	1127.62987	0.88554	0.00050017	-1.0596	-0.00059848	-0.17406	-9.8312E-05	564.8213876376751	30.322	0.64195	27.613	27.36	28.002	-2.7097					22	12	3	0	0	0	0.60342	1	823	823		31.53	4.8369	1	38373			25395	4319	20775	20800	28284	28284					0.07116201909047959
KPEHKNVAK	9	Unmodified	_KPEHKNVAK_					0	0	0		tr|A0A553SG18|A0A553SG18_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09940PE=4SV=1	tr|A0A553SG18|A0A553SG18_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09940PE=4SV=1	tr|A0A553SG18|A0A553SG18_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09940PE=4SV=1	MSMS	OvCa9_classI_Rep4_	4	525.8074340820312	2	525.806365	1049.59818	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.076	1	18.737	18.237	19.237	-1.3386								0	0	0	0.19223	1	9	9		27.882	1.1893	1				25396	33105	20776	20801	28285	28285					0.07536253945750104
KPEKKRYF	8	Unmodified	_KPEKKRYF_					0	0	0		nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6	nc|ENSG00000138642|Q8IVU3-2|HERC6	nc|ENSG00000138642|Q8IVU3-2|HERC6	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.864990234375	2	548.319109	1094.62366	-0.38227	-0.0002096	-1.3596	-0.00074551	-1.7419	-0.00095511	548.3181332007808	56.319	0.24683	56.319	56.135	56.382	0					10	5	2	0	0	0	0.028476	1	4652	4652		24.519	5.1592	1	295980			25397	4703	20777	20802	28286	28286					0.0801372846817685
KPEQSRQF	8	Unmodified	_KPEQSRQF_					0	0	0			REV__ENST00000524388.5_1_11:73971178-73978288:-|nuORF	REV__ENST00000524388.5_1_11:73971178-73978288:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	509.8056945800781	2	510.267073	1018.51959	0.44401	0.00022657	-0.59687	-0.00030456	-0.15285	-7.7997E-05	510.2665858359981	41.102	0.8866	38.392	38.142	39.029	-2.7097					33	17	3	0	0	0	0.028476	1	2124	2124		32.812	11.865	1	50866	+		25398	27098	20778	20803	28287	28287					0.011074016406723786
KPERVGVCVL	10	Unmodified	_KPERVGVCVL_					0	0	0		CCT8L2|p.A207V|1|0.32|ENSG00000198445|chr22:16591931-16591931|G/A|missense_variant	CCT8L2|p.A207V|1|0.32|ENSG00000198445|chr22:16591931-16591931|G/A|missense_variant	CCT8L2|p.A207V|1|0.32|ENSG00000198445|chr22:16591931-16591931|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7777709960938	2	550.318251	1098.62195	-0.2752	-0.00015145	-1.2395	-0.00068211	-1.5147	-0.00083356	550.3158189719985	62.041	0.75797	62.041	61.743	62.501	0					49	17	5	0	0	0	0.02661	1	5526	5526		40.778	0	1	1816600			25399	203	20779	20804	28288	28288					0.07658351387908624
KPERVVTIQ	9	Unmodified	_KPERVVTIQ_					0	0	0		tr|A0A553SH66|A0A553SH66_NIACIIron-siderophoreABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_12180PE=3SV=1	tr|A0A553SH66|A0A553SH66_NIACIIron-siderophoreABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_12180PE=3SV=1	tr|A0A553SH66|A0A553SH66_NIACIIron-siderophoreABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_12180PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.3424072265625	2	535.321848	1068.62914	-0.10669	-5.7114E-05	0.18456	9.8796E-05	0.077864	4.1682E-05	535.3216660375971	60.554	0.49438	60.554	60.277	60.772	0					17	11	2	0	0	0	0.027462	1	5297	5297		26.693	11.051	1	261250			25400	33243	20780	20805	28289	28289					0.09757407259985484
KPESQRQRT	9	Unmodified	_KPESQRQRT_					0	0	0		ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.2974853515625	2	565.307261	1128.59997	2.5604	0.0014474	-1.0311	-0.00058291	1.5292	0.00086449	565.3064980383243	98.794	0.62328	98.794	98.332	98.955	0					26	14	2	0	0	0	0.027447	1	10879	10879		56.721	1.9447	1	1082000			25401	1139	20781	20806	28290	28290					0.04081262963700283
KPETIHLRF	9	Unmodified	_KPETIHLRF_					0	0	0			REV__ENSG00000154358|ENST00000680850|OBSCN	REV__ENSG00000154358|ENST00000680850|OBSCN	MULTI-MSMS	OvCa9_classI_Rep4_	4	570.8265380859375	2	570.82984	1139.64513	-0.85503	-0.00048808	-3.2605	-0.0018612	-4.1156	-0.0023493	570.8278920258332	45.813	1.2516	42.774	42.386	43.637	-3.0385					70	23	4	0	0	0	0.35444	1	2354	2354		56.721	0	1	348530	+		25402	20380	20782	20807	28291	28291					0.08089113496885147
KPEVRINI	8	Unmodified	_KPEVRINI_					0	0	0			REV__ENST00000515251.1_1_4:120376278-120381900:+|nuORF	REV__ENST00000515251.1_1_4:120376278-120381900:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	485.7879943847656	2	484.798009	967.581465	-0.87498	-0.00042419	0.4392	0.00021292	-0.43578	-0.00021127	484.7981102631955	88.048	0.76155	85.917	85.7	86.461	-2.1309					19	14	2	0	0	0	0.028476	1	5322	5322		44.117	1.7207	1	23492	+		25403	26995	20783	20808	28292	28292					0.09637753059791976
KPFDQTTISL	10	Unmodified	_KPFDQTTISL_					0	0	0		nc|ENSG00000117519|Q15417-3|CNN3;ENSG00000117519|ENST00000370206|CNN3;nc|ENSG00000117519|Q15417-2|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	MULTI-MSMS	OvCa9_classI_Rep2	2	575.309814453125	2	575.311146	1148.60774	-1.1239	-0.00064659	-0.1451	-8.3476E-05	-1.269	-0.00073006	575.3111142499293	98.321	3.118	97.428	96.974	100.09	-0.89306					184	62	6	0	0	0	0.017847	7	8949	8903;8920;8925;8943;8949;8967;8974		150.36	20.543	1	5141200			25404	3260	20784	20809	28293;28294;28295;28296;28297;28298;28299	28297					0.039379774406370416
KPFDQTTISL	10	Unmodified	_KPFDQTTISL_					0	0	0		nc|ENSG00000117519|Q15417-3|CNN3;ENSG00000117519|ENST00000370206|CNN3;nc|ENSG00000117519|Q15417-2|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	MULTI-MSMS	OvCa9_classI_Rep3	3	575.3116455078125	2	575.311146	1148.60774	-0.889	-0.00051145	0.061496	3.5379E-05	-0.8275	-0.00047607	575.3111564833367	99.127	2.7262	97.442	97.061	99.787	-1.685					178	53	6	0	0	0	0.017847	8	6646	6635;6646;6652;6658;6664;6671;6677;6703		150.36	20.94	1	7573400			25405	3260	20784	20809	28300;28301;28302;28303;28304;28305;28306;28307	28301					0.039379774406370416
KPFDQTTISL	10	Unmodified	_KPFDQTTISL_					0	0	0		nc|ENSG00000117519|Q15417-3|CNN3;ENSG00000117519|ENST00000370206|CNN3;nc|ENSG00000117519|Q15417-2|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.3116455078125	2	575.311146	1148.60774	-1.245	-0.00071626	0.28336	0.00016302	-0.96163	-0.00055324	575.3112834479634	99.615	3.1767	97.29	96.951	100.13	-2.3253					165	62	6	0	0	0	0.05764	4	8907	8870;8907;8919;8931		126.24	21.263	1	6971900			25406	3260	20784	20809	28308;28309;28310;28311	28309					0.039379774406370416
KPFEQVKGITL	11	Unmodified	_KPFEQVKGITL_					0	0	0		nc|ENSG00000151726|P33121-3|ACSL1;nc|ENSG00000151726|P33121-2|ACSL1;ENSG00000151726|ENST00000281455|ACSL1;ENST00000513001.5_1_4:185678281-185679089:-|nuORF	nc|ENSG00000151726|P33121-3|ACSL1	nc|ENSG00000151726|P33121-3|ACSL1	MULTI-MSMS	OvCa9_classI_Rep2	2	630.3720092773438	2	630.371538	1258.72852	-1.0398	-0.00065546	0.48254	0.00030418	-0.55726	-0.00035128	630.3717969488214	86.235	2.1731	84.744	84.394	86.567	-1.4906					125	42	5	0	0	0	2.3043E-05	6	7498	7482;7487;7492;7498;7505;7512		169.65	69.872	1	1252500			25407	15095	20785	20810	28312;28313;28314;28315;28316;28317	28315					0.10950805154084264
KPFEQVKGITL	11	Unmodified	_KPFEQVKGITL_					0	0	0		nc|ENSG00000151726|P33121-3|ACSL1;nc|ENSG00000151726|P33121-2|ACSL1;ENSG00000151726|ENST00000281455|ACSL1;ENST00000513001.5_1_4:185678281-185679089:-|nuORF	nc|ENSG00000151726|P33121-3|ACSL1	nc|ENSG00000151726|P33121-3|ACSL1	MULTI-MSMS	OvCa9_classI_Rep2	2	420.5838623046875	3	420.583451	1258.72852	-0.033517	-1.4097E-05	-0.29937	-0.00012591	-0.33289	-0.00014001	420.5832794369241	86.254	1.6856	84.763	84.394	86.08	-1.4906					106	32	5	0	0	0	0.19299	2	7495	7489;7495		80.916	27.827	1	760760			25408	15095	20785	20810	28318;28319	28319					0.10950805154084264
KPFEQVKGITL	11	Unmodified	_KPFEQVKGITL_					0	0	0		nc|ENSG00000151726|P33121-3|ACSL1;nc|ENSG00000151726|P33121-2|ACSL1;ENSG00000151726|ENST00000281455|ACSL1;ENST00000513001.5_1_4:185678281-185679089:-|nuORF	nc|ENSG00000151726|P33121-3|ACSL1	nc|ENSG00000151726|P33121-3|ACSL1	MULTI-MSMS	OvCa9_classI_Rep3	3	630.372314453125	2	630.371538	1258.72852	-0.45444	-0.00028646	0.15319	9.6565E-05	-0.30125	-0.0001899	630.3715679372694	87.131	2.0233	84.954	84.633	86.656	-2.1768					131	39	5	0	0	0	0.0076564	6	5219	5214;5219;5225;5232;5238;5245		158.47	82.301	1	2118500			25409	15095	20785	20810	28320;28321;28322;28323;28324;28325	28321					0.10950805154084264
KPFEQVKGITL	11	Unmodified	_KPFEQVKGITL_					0	0	0		nc|ENSG00000151726|P33121-3|ACSL1;nc|ENSG00000151726|P33121-2|ACSL1;ENSG00000151726|ENST00000281455|ACSL1;ENST00000513001.5_1_4:185678281-185679089:-|nuORF	nc|ENSG00000151726|P33121-3|ACSL1	nc|ENSG00000151726|P33121-3|ACSL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	630.3734130859375	2	630.371538	1258.72852	-1.1268	-0.00071028	0.33706	0.00021247	-0.78971	-0.00049781	630.3717241063566	87.458	2.0085	84.831	84.499	86.507	-2.6269					114	39	5	0	0	0	5.9497E-05	5	7434	7423;7434;7446;7459;7492		178.55	108.92	1	1545600			25410	15095	20785	20810	28326;28327;28328;28329;28330	28327					0.10950805154084264
KPFEQVKGITL	11	Unmodified	_KPFEQVKGITL_					0	0	0		nc|ENSG00000151726|P33121-3|ACSL1;nc|ENSG00000151726|P33121-2|ACSL1;ENSG00000151726|ENST00000281455|ACSL1;ENST00000513001.5_1_4:185678281-185679089:-|nuORF	nc|ENSG00000151726|P33121-3|ACSL1	nc|ENSG00000151726|P33121-3|ACSL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	420.5844421386719	3	420.583451	1258.72852	-1.7167	-0.00072201	1.1341	0.00047699	-0.58258	-0.00024502	420.5838914006679	87.454	1.7138	84.827	84.448	86.162	-2.6269					98	33	4	0	0	0	0.2322	4	7436	7425;7436;7448;7462		75.652	21.309	1	941980			25411	15095	20785	20810	28331;28332;28333;28334	28332					0.10950805154084264
KPFEQVKGITL	11	Unmodified	_KPFEQVKGITL_					0	0	0		nc|ENSG00000151726|P33121-3|ACSL1;nc|ENSG00000151726|P33121-2|ACSL1;ENSG00000151726|ENST00000281455|ACSL1;ENST00000513001.5_1_4:185678281-185679089:-|nuORF	nc|ENSG00000151726|P33121-3|ACSL1	nc|ENSG00000151726|P33121-3|ACSL1	MULTI-MATCH	OvCa9_classI_Rep3	3		3	420.583451	1258.72852	-0.22478	-9.4539E-05	-0.14087	-5.9246E-05	-0.36565	-0.00015378	420.58338156380074	87.136	1.7343	84.959	84.633	86.367	-2.1768	0.10934	-2.3231E-05	NaN	80.916	112	33	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1064100			25412	15095	20785	20810							0.10950805154084264
KPFHGDIQC	9	Unmodified	_KPFHGDIQC_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-MSMS	OvCa9_classI_Rep2	2	522.7517700195312	2	522.750201	1043.48585	3.3759	0.0017648	-0.33678	-0.00017605	3.0392	0.0015887	522.7498693889222	26.205	1.4035	23.495	23.207	24.61	-2.7097					77	38	3	0	0	0	0.50149	1	369	369		42.396	6.7778	1	431350			25413	8628	20786	20811	28335	28335					-0.03415343122719605
KPFLGIGL	8	Unmodified	_KPFLGIGL_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-MSMS	OvCa9_classI_Rep2	2	422.7677001953125	2	422.768189	843.521825	0.28041	0.00011855	-0.00064008	-2.7061E-07	0.27977	0.00011828	422.76803482183817	114	1.2826	113.88	113.61	114.9	-0.11777					57	25	4	0	0	0	0.35894	4	10841	10837;10841;10847;10861		96.048	0	1	192440			25414	2654	20787	20812	28336;28337;28338;28339	28337					0.09380482116409894
KPFLGIGL	8	Unmodified	_KPFLGIGL_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-MSMS	OvCa9_classI_Rep3	3	422.76812744140625	2	422.768189	843.521825	0.41678	0.0001762	-0.32058	-0.00013553	0.096193	4.0667E-05	422.76792007675357	114.98	1.1845	113.93	113.65	114.83	-1.055					56	23	3	0	0	0	0.35894	5	8515	8515;8518;8524;8531;8540		96.048	0	1	212020			25415	2654	20787	20812	28340;28341;28342;28343;28344	28340					0.09380482116409894
KPFLGIGL	8	Unmodified	_KPFLGIGL_					0	0	0		nc|ENSG00000108424|Q14974-2|KPNB1;ENSG00000108424|ENST00000290158|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	nc|ENSG00000108424|Q14974-2|KPNB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	422.76776123046875	2	422.768189	843.521825	0.14634	6.187E-05	-0.1411	-5.9652E-05	0.0052451	2.2174E-06	422.7679993952475	115.34	1.291	113.95	113.62	114.91	-1.3977					56	25	3	0	0	0	0.35894	4	10750	10727;10736;10750;10769		96.048	0	1	245810			25416	2654	20787	20812	28345;28346;28347;28348	28347					0.09380482116409894
KPFLKGPRPT	10	Unmodified	_KPFLKGPRPT_					0	0	0			REV__ENSG00000141424|ENST00000269187|SLC39A6	REV__ENSG00000141424|ENST00000269187|SLC39A6	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.3174438476562	2	570.848033	1139.68151	-0.88462	-0.00050498	-1.3718	-0.00078311	-2.2565	-0.0012881	570.8473284116808	34.089	0.38287	34.089	33.969	34.351	0					9	7	2	0	0	0	0.026606	1	1603	1603		52.937	0	1	42276	+		25417	19735	20788	20813	28349	28349					0.11725990393597385
KPFLSQPH	8	Unmodified	_KPFLSQPH_					0	0	0			REV__ENST00000361357.7_1_17:61772754-61773267:+|nuORF	REV__ENST00000361357.7_1_17:61772754-61773267:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	477.2606201171875	2	477.263802	952.513051	-0.5963	-0.00028459	-3.9617	-0.0018908	-4.558	-0.0021754	477.2617961097706	39.948	0.44402	39.948	39.756	40.2	0					17	9	2	0	0	0	0.6962	1	2395	2395		44.117	0	1	516980	+		25418	24848	20789	20814	28350	28350					0.0348950847994729
KPFNKLIE	8	Unmodified	_KPFNKLIE_					0	0	0			REV__ENSG00000156017|ENST00000376834|CARNMT1	REV__ENSG00000156017|ENST00000376834|CARNMT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.749755859375	2	494.794935	987.575317	-0.066529	-3.2918E-05	3.5282	0.0017457	3.4616	0.0017128	494.79654099825586	64.652	0.4175	64.652	64.417	64.834	0					15	9	2	0	0	0	0.028476	1	5905	5905		60.972	7.6205	1	505730	+		25419	20458	20790	20815	28351	28351					0.08103234828274708
KPFQALIQT	9	Unmodified	_KPFQALIQT_					0	0	0			REV__nc|ENSG00000158636|Q7Z589-2|EMSY	REV__nc|ENSG00000158636|Q7Z589-2|EMSY	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.77978515625	2	523.305667	1044.59678	-1.3125	-0.00068684	-3.1596	-0.0016534	-4.4721	-0.0023403	523.3040056353512	28.066	0.79795	28.066	27.641	28.439	0					25	15	2	0	0	0	0.027462	1	889	889		45.972	24.27	1	57682	+		25420	20576	20791	20816	28352	28352					0.0762661985700106
KPFVSVAQIPA	11	Unmodified	_KPFVSVAQIPA_					0	0	0			REV__ART5|p.F213V|1|0.09|ENSG00000167311|chr11:3639792-3639792|A/C|missense_variant	REV__ART5|p.F213V|1|0.09|ENSG00000167311|chr11:3639792-3639792|A/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	578.8552856445312	2	578.839874	1155.66519	-0.99147	-0.0005739	-3.8663	-0.002238	-4.8578	-0.0028119	578.838160612452	74.438	1.1451	72.467	71.957	73.102	-1.9711					53	21	3	0	0	0	0.025528	1	6065	6065		21.686	0	1	69788	+		25421	15665	20792	20817	28353	28353					0.09358864436876502
KPFWERPPQ	9	Unmodified	_KPFWERPPQ_					0	0	0		ENSG00000139629|ENST00000356317|GALNT6;GALNT6|p.C393Lfs*13|1|0.1|ENSG00000139629|chr12:51359322-51359322|C/-|frameshift_variant	ENSG00000139629|ENST00000356317|GALNT6	ENSG00000139629|ENST00000356317|GALNT6	MULTI-SECPEP	OvCa9_classI_Rep3	3	593.8079223632812	2	592.81419	1183.61383	-1.26	-0.00074695	-2.93	-0.001737	-4.19	-0.0024839	593.3121370297005	84.395	0.58671	82.134	82.02	82.607	-2.261					15	11	2	0	0	0	0.027462	1	4915	4915		14.865	0	1	16027			25422	4791	20793	20818	28354	28354					0.029365404627924363
KPGASRLLL	9	Unmodified	_KPGASRLLL_					0	0	0		ENST00000355387.6_1_1:44870947-44877656:+|nuORF;ENST00000361799.6_1_1:44870995-44877742:+|nuORF	ENST00000355387.6_1_1:44870947-44877656:+|nuORF	ENST00000355387.6_1_1:44870947-44877656:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.8088684082031	2	477.808377	953.6022	1.0264	0.00049042	-1.5216	-0.00072704	-0.49522	-0.00023662	477.80742981999833	37.517	1.441	34.624	34.343	35.784	-2.8925					80	28	4	0	0	0	0.22035	1	1400	1400		72.879	14.097	1	427420			25423	10677	20794	20819	28355	28355					0.12354343439471904
KPGDRIGII	9	Unmodified	_KPGDRIGII_					0	0	0		tr|A0A553SQ76|A0A553SQ76_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_20455PE=4SV=1	tr|A0A553SQ76|A0A553SQ76_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_20455PE=4SV=1	tr|A0A553SQ76|A0A553SQ76_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_20455PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	484.79901123046875	2	484.798009	967.581465	-0.83208	-0.00040339	0.012931	6.2689E-06	-0.81914	-0.00039712	484.7981247180956	97.675	2.4444	95.916	95.105	97.55	-1.7595					95	47	4	0	0	0	0.35444	1	6486	6486		56.721	7.5103	1	1805800			25424	34129	20795	20820	28356	28356					0.09637753059814713
KPGDRLIK	8	Unmodified	_KPGDRLIK_					0	0	0		nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13;PTPN13|p.R2338Qfs*21|1|0.05|ENSG00000163629|chr4:86807826-86807827|-/A|frameshift_variant	nc|ENSG00000163629|Q12923-2|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-MSMS	OvCa9_classI_Rep2	2	463.7919921875	2	463.792727	925.5709	-1.1345	-0.00052618	0.86769	0.00040243	-0.26683	-0.00012375	463.7931351732129	55.008	1.9913	52.194	51.125	53.116	-2.8139					104	39	4	0	0	0	0.68704	1	3826	3826		45.972	0.020292	1	1215200			25425	6337	20796	20821	28357	28357					0.10513770405384548
KPGKCGMSTG	10	Unmodified	_KPGKCGMSTG_					0	0	0			REV__ENST00000494536.5_1_2:64083453-64109797:+|nuORF	REV__ENST00000494536.5_1_2:64083453-64109797:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	483.2306213378906	2	483.230787	964.447022	-0.48832	-0.00023597	0.791	0.00038223	0.30268	0.00014626	483.23107601576424	29.161	0.64901	29.161	28.987	29.636	0					16	12	2	0	0	0	0.74374	1	1022	1022		25.574	2.5316	1	149290	+		25426	21482	20797	20822	28358	28358					-0.036623917487645485
KPGKQTSLAG	10	Unmodified	_KPGKQTSLAG_					0	0	0			REV__ENST00000273814.7_1_4:953005-953860:-|nuORF	REV__ENST00000273814.7_1_4:953005-953860:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	493.7843322753906	2	493.785099	985.555644	1.4093	0.00069587	-1.7511	-0.00086466	-0.34184	-0.00016879	493.78415838053036	41.942	1.876	39.232	38.832	40.708	-2.7097					88	37	4	0	0	0	0.47142	1	2268	2268		58.23	1.5089	1	1028200	+		25427	24084	20798	20823	28359	28359					0.06228858817530636
KPGKVPKLL	9	Unmodified	_KPGKVPKLL_					0	0	0		nc|ENSG00000244575|A0A075B6S5|IGKV1-27;nc|ENSG00000250036|P0DSN7|IGKV1D-37;ENST00000453184.2_1_2:90007722-90008108:+|nuORF	nc|ENSG00000244575|A0A075B6S5|IGKV1-27	nc|ENSG00000244575|A0A075B6S5|IGKV1-27	MULTI-MSMS	OvCa9_classI_Rep2	2	490.33660888671875	2	490.33677	978.658987	0.31976	0.00015679	-1.1553	-0.00056648	-0.83553	-0.00040969	490.3362879264998	135.18	3.9777	134.96	134.64	138.62	-0.22697					225	81	5	0	0	0	0.61208	1	13710	13710		30.504	6.3009	1	7114000			25428	15344	20799	20824	28360	28360					0.16880390995981998
KPGLFHGVG	9	Unmodified	_KPGLFHGVG_					0	0	0		ENSG00000158301|ENST00000483720|GPRASP2;GPRASP2|p.F508C|1|0.79|ENSG00000158301|chrX:102716392-102716392|T/G|missense_variant	ENSG00000158301|ENST00000483720|GPRASP2	ENSG00000158301|ENST00000483720|GPRASP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.2501525878906	2	456.25852	910.502486	-0.42068	-0.00019194	-3.2283	-0.0014729	-3.6489	-0.0016649	456.2569033211588	53.634	0.49342	53.634	53.475	53.969	0					21	11	3	0	0	0	0.027462	1	4316	4316		19.36	0	1	488630			25429	5945	20800	20825	28361	28361					0.043655258255284934
KPGLFSLTL	9	Unmodified	_KPGLFSLTL_					0	0	0		nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1	nc|ENSG00000104763|Q13510-3|ASAH1	nc|ENSG00000104763|Q13510-3|ASAH1	MULTI-MSMS	OvCa9_classI_Rep2	2	488.2975158691406	2	488.29731	974.580068	0.36578	0.00017861	-0.29652	-0.00014479	0.069252	3.3816E-05	488.2969871349096	123.24	1.4299	123.02	122.61	124.04	-0.21803					76	28	4	0	0	0	0.22621	2	11940	11940;11946		71.877	24.22	1	196650			25430	2390	20801	20826	28362;28363	28362					0.0917611897103825
KPGLFSLTL	9	Unmodified	_KPGLFSLTL_					0	0	0		nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1	nc|ENSG00000104763|Q13510-3|ASAH1	nc|ENSG00000104763|Q13510-3|ASAH1	MULTI-MSMS	OvCa9_classI_Rep3	3	488.2977600097656	2	488.29731	974.580068	1.033	0.00050441	-1.1213	-0.00054754	-0.088324	-4.3128E-05	488.29662142573915	124.3	1.51	123.27	122.82	124.33	-1.0377					67	28	3	0	0	0	0.22621	3	9607	9607;9612;9618		71.877	25.926	1	248350			25431	2390	20801	20826	28364;28365;28366	28364					0.0917611897103825
KPGLFSLTL	9	Unmodified	_KPGLFSLTL_					0	0	0		nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1	nc|ENSG00000104763|Q13510-3|ASAH1	nc|ENSG00000104763|Q13510-3|ASAH1	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.2975769042969	2	488.29731	974.580068	-1.012	-0.00049416	1.0324	0.00050413	0.020404	9.963E-06	488.29763994024694	124.62	1.6404	123.23	122.82	124.46	-1.3908					82	31	4	0	0	0	0.10363	2	11827	11815;11827		96.19	27.404	1	255520			25432	2390	20801	20826	28367;28368	28368					0.0917611897103825
KPGLKVLSI	9	Unmodified	_KPGLKVLSI_					0	0	0		ENSG00000170458|ENST00000302014|CD14	ENSG00000170458|ENST00000302014|CD14	ENSG00000170458|ENST00000302014|CD14	MULTI-MSMS	OvCa9_classI_Rep2	2	477.820556640625	2	477.820953	953.627353	0.18992	9.0749E-05	-0.6535	-0.00031226	-0.46358	-0.00022151	477.8205868417879	80.834	1.9387	79.139	78.819	80.757	-1.6951					91	37	4	0	0	0	0.075543	5	6835	6835;6839;6843;6851;6859		104.06	37.628	1	880650			25433	7104	20802	20827	28369;28370;28371;28372;28373	28369					0.14868398242049352
KPGLKVLSI	9	Unmodified	_KPGLKVLSI_					0	0	0		ENSG00000170458|ENST00000302014|CD14	ENSG00000170458|ENST00000302014|CD14	ENSG00000170458|ENST00000302014|CD14	MULTI-MSMS	OvCa9_classI_Rep3	3	477.8215637207031	2	477.820953	953.627353	-0.080766	-3.8592E-05	-0.13197	-6.3059E-05	-0.21274	-0.00010165	477.82083449277064	81.736	2.2441	79.413	78.905	81.149	-2.3226					105	44	4	0	0	0	0.045281	4	4562	4557;4562;4568;4574		122.18	45.402	1	1069300			25434	7104	20802	20827	28374;28375;28376;28377	28375					0.14868398242049352
KPGLKVLSI	9	Unmodified	_KPGLKVLSI_					0	0	0		ENSG00000170458|ENST00000302014|CD14	ENSG00000170458|ENST00000302014|CD14	ENSG00000170458|ENST00000302014|CD14	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.8218688964844	2	477.820953	953.627353	-0.49288	-0.00023551	-0.33121	-0.00015826	-0.82409	-0.00039377	477.82069406104654	81.961	1.7953	79.278	78.914	80.71	-2.6829					93	36	4	0	0	0	0.14855	3	6746	6746;6758;6770		85.161	33.825	1	1018200			25435	7104	20802	20827	28378;28379;28380	28378					0.14868398242049352
KPGMEEDIHVM	11	Unmodified	_KPGMEEDIHVM_					0	0	0			REV__ENSG00000101126|ENST00000621696|ADNP	REV__ENSG00000101126|ENST00000621696|ADNP	MULTI-SECPEP	OvCa99_classI_Rep5	1	643.6555786132812	2	643.299398	1284.58424	2.2917	0.0014743	-2.4075	-0.0015488	-0.11583	-7.4514E-05	643.2975767505607	77.476	0.54541	77.476	77.168	77.714	0					24	12	3	0	0	0	0.026099	1	7793	7793		14.137	0	1	311490	+		25436	17474	20803	20828	28381	28381					-0.04666527659901476
KPGPGRVAN	9	Unmodified	_KPGPGRVAN_					0	0	0			REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MSMS	OvCa9_classI_Rep2	2	448.2590637207031	2	448.259051	894.503549	0.91253	0.00040905	-0.89413	-0.0004008	0.018403	8.2495E-06	448.25856617736815	142.24	1.5311	142.01	141.52	143.05	-0.22696					82	30	4	0	0	0	0.62352	1	14303	14303		29.15	0.89528	1	131560	+		25437	19513	20804	20829	28382	28382					0.05207740194418875
KPGPLGPNGPI	11	Unmodified	_KPGPLGPNGPI_					0	0	0			REV__nc|ENSG00000188153|P29400|COL4A5	REV__nc|ENSG00000188153|P29400|COL4A5	MULTI-MSMS	OvCa99_classI_Rep5	1	523.8036499023438	2	523.803291	1045.59203	-0.41452	-0.00021713	0.41016	0.00021484	-0.0043615	-2.2846E-06	523.8034408426003	30.806	0.39367	30.806	30.682	31.076	0					17	7	3	0	0	0	0.69808	1	1220	1220		30.318	0	1	198610	+		25438	22695	20805	20830	28383	28383					0.07105735714230832
KPGPLRRA	8	Unmodified	_KPGPLRRA_					0	0	0		ENST00000354765.6_1_6:144285946-144286364:-|nuORF	ENST00000354765.6_1_6:144285946-144286364:-|nuORF	ENST00000354765.6_1_6:144285946-144286364:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	447.76141357421875	2	447.785236	893.555919	2.9863	0.0013372	4.4825	0.0020072	7.4688	0.0033444	447.78734971988683	41.221	0.29554	38.512	38.438	38.733	-2.7097					9	5	2	0	0	0	0.028476	1	2145	2145		25.45	0	1	9319.4			25439	10668	20806	20831	28384	28384					0.10488323328024762
KPGPQVSLAPI	11	Unmodified	_KPGPQVSLAPI_					0	0	0			REV__nc|ENSG00000105609|O75023-2|LILRB5	REV__nc|ENSG00000105609|O75023-2|LILRB5	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8296508789062	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.7046	1	11713	11713		28.081	3.8787	1	308210	+		25440	17739	20807	20832	28385	28385					0.10094577919790026
KPGPVPVPGPT	11	Unmodified	_KPGPVPVPGPT_					0	0	0			REV__nc|ENSG00000156219|Q13508-3|ART3	REV__nc|ENSG00000156219|Q13508-3|ART3	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3033447265625	2	523.305667	1044.59678	-0.69596	-0.0003642	-3.2951	-0.0017244	-3.9911	-0.0020886	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.71498	1	13824	13824		24.519	2.5593	1	130240	+		25441	20467	20808	20833	28386	28386					0.0762661985700106
KPGRKGISL	9	Unmodified	_KPGRKGISL_					0	0	0		ENST00000502453.1_1_5:32599051-32601187:+|nuORF;ENSG00000113387|ENST00000265073|SUB1;chr5:32585625-32586369|402|14.17|0.62|4.52|+|ENST00000515355|SUB1,SUB1;chr5:32531916-32571091|379|20.97|0.93|4.5|+|ENST00000512913|SUB1,SUB1	ENST00000502453.1_1_5:32599051-32601187:+|nuORF	ENST00000502453.1_1_5:32599051-32601187:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	478.30560302734375	2	478.306001	954.597449	-0.0091048	-4.3549E-06	-0.34741	-0.00016617	-0.35651	-0.00017052	478.3057665530243	40.536	2.2179	37.826	37.551	39.769	-2.7097					109	44	4	0	0	0	0.11471	7	2061	2043;2049;2061;2067;2080;2092;2098		93.195	26.736	1	1098200			25442	501	20809	20834	28387;28388;28389;28390;28391;28392;28393	28389					0.11833459296701676
KPGRKGISL	9	Unmodified	_KPGRKGISL_					0	0	0		ENST00000502453.1_1_5:32599051-32601187:+|nuORF;ENSG00000113387|ENST00000265073|SUB1;chr5:32585625-32586369|402|14.17|0.62|4.52|+|ENST00000515355|SUB1,SUB1;chr5:32531916-32571091|379|20.97|0.93|4.5|+|ENST00000512913|SUB1,SUB1	ENST00000502453.1_1_5:32599051-32601187:+|nuORF	ENST00000502453.1_1_5:32599051-32601187:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.30572509765625	2	478.306001	954.597449	-0.57959	-0.00027722	-0.42308	-0.00020236	-1.0027	-0.00047958	478.30577377690133	40.613	2.2753	37.659	37.421	39.697	-2.9541					122	43	5	0	0	0	0.1804	4	1759	1749;1759;1785;1821		79.713	16.406	1	2613300			25443	501	20809	20834	28394;28395;28396;28397	28395					0.11833459296701676
KPGRKLAEV	9	Unmodified	_KPGRKLAEV_					0	0	0		nc|ENSG00000075891|Q02962-4|PAX2;chr10:100824984-100827009|150|33.86|0.86|5.3|+|ENST00000370296|PAX2,PAX2;nc|ENSG00000075891|Q02962-2|PAX2	nc|ENSG00000075891|Q02962-4|PAX2	nc|ENSG00000075891|Q02962-4|PAX2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.7549743652344	2	499.311284	996.608014	-0.29536	-0.00014748	0.1137	5.6774E-05	-0.18166	-9.0705E-05	499.3108146851064	57.712	0.61084	54.367	54.138	54.748	-3.3449					15	11	2	0	0	0	0.027462	1	3748	3748		24.519	4.5224	1	28366			25444	269	20810	20835	28398	28398					0.10957441951131841
KPGRVGRL	8	Unmodified	_KPGRVGRL_					0	0	0			REV__tr|A0A7D7A6T9|A0A7D7A6T9_9CLOTDNAhelicaseRecQOS=ClostridiumintestinaleOX=36845GN=recQPE=3SV=1	REV__tr|A0A7D7A6T9|A0A7D7A6T9_9CLOTDNAhelicaseRecQOS=ClostridiumintestinaleOX=36845GN=recQPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	441.7850341796875	2	441.785236	881.555919	0.68642	0.00030325	-0.19072	-8.4257E-05	0.49571	0.000219	441.7849828834761	24.361	0.3478	24.361	24.188	24.536	0					10	6	2	0	0	0	0.75915	1	446	446		20.482	5.8177	1	31876	+		25445	32664	20811	20836	28399	28399					0.11040323328040813
KPGRVGRL	8	Unmodified	_KPGRVGRL_					0	0	0			REV__tr|A0A7D7A6T9|A0A7D7A6T9_9CLOTDNAhelicaseRecQOS=ClostridiumintestinaleOX=36845GN=recQPE=3SV=1	REV__tr|A0A7D7A6T9|A0A7D7A6T9_9CLOTDNAhelicaseRecQOS=ClostridiumintestinaleOX=36845GN=recQPE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	441.785236	881.555919	0.68642	0.00030325	-0.19072	-8.4257E-05	0.49571	0.000219	441.7849828834761	24.361	0.3478	24.361	24.188	24.536	0	0	0	NaN	20.482	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31876	+		25446	32664	20811	20836							0.11040323328040813
KPGSATFPFFG	11	Unmodified	_KPGSATFPFFG_					0	0	0		ENST00000481284.5_1_20:33462930-33515014:+|nuORF;ENSG00000131069|ENST00000360596|ACSS2;nc|ENSG00000131069|Q9NR19-2|ACSS2	ENST00000481284.5_1_20:33462930-33515014:+|nuORF	ENST00000481284.5_1_20:33462930-33515014:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2890014648438	2	578.295299	1154.57605	-7.6021	-0.0043963	-2.1936	-0.0012685	-9.7957	-0.0056648	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.68021	1	14085	14085		36.447	0.82846	1	1429200			25447	4043	20812	20837	28400	28400					0.004940294773177811
KPGTQGHTKN	10	Unmodified	_KPGTQGHTKN_					0	0	0		ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.317626953125	2	534.283254	1066.55196	-0.072018	-3.8478E-05	3.2036	0.0017116	3.1316	0.0016731	534.2848429891712	35.277	0.5499	32.428	32.24	32.79	-2.849					18	10	2	0	0	0	0.027033	1	1150	1150		33.922	1.9668	1	30654			25448	4311	20813	20838	28401	28401					0.021341890436588073
KPGVIPEVTK	10	Unmodified	_KPGVIPEVTK_					0	0	0		tr|A0A7D6VRA1|A0A7D6VRA1_9CLOTCarboxypeptidaseregulatory-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18615PE=3SV=1	tr|A0A7D6VRA1|A0A7D6VRA1_9CLOTCarboxypeptidaseregulatory-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18615PE=3SV=1	tr|A0A7D6VRA1|A0A7D6VRA1_9CLOTCarboxypeptidaseregulatory-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18615PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.7885131835938	2	534.326599	1066.63865	-0.33532	-0.00017917	0.11603	6.1997E-05	-0.2193	-0.00011718	534.3264880015334	42.731	0.64738	42.731	42.496	43.143	0					31	14	4	0	0	0	0.02706	1	2744	2744		17.468	0.99486	1	645330			25449	34907	20814	20839	28402	28402					0.10799175545480466
KPGWPHPK	8	Unmodified	_KPGWPHPK_					0	0	0			REV__chr19:51000101-51000424|105|10.38|0.05|7.82|-|1|None,KLK8|1	REV__chr19:51000101-51000424|105|10.38|0.05|7.82|-|1|None,KLK8|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.26861572265625	2	473.766512	945.518471	-0.42952	-0.00020349	-4.1611	-0.0019714	-4.5906	-0.0021749	473.7643774452161	44.625	1.8997	41.587	40.958	42.858	-3.0385					66	36	3	0	0	0	0.028476	1	2168	2168		17.365	0	1	152950	+		25450	15983	20815	20840	28403	28403					0.04353232062408097
KPHHSIKVP	9	Unmodified	_KPHHSIKVP_					0	0	0			REV__ENST00000497302.1_1_1:12042112-12052340:+|nuORF	REV__ENST00000497302.1_1_1:12042112-12052340:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	521.8125610351562	2	521.811451	1041.60835	-0.83564	-0.00043605	3.6163	0.001887	2.7806	0.001451	521.8134554363941	67.923	3.082	65.262	64.842	67.924	-2.661					124	61	3	0	0	0	0.5811	1	5379	5379		34.173	1.3601	1	4500900	+		25451	26774	20816	20841	28404	28404					0.08920861671003877
KPHILKTV	8	Unmodified	_KPHILKTV_					0	0	0		PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant;ENSG00000205038|ENST00000378402|PKHD1L1;PKHD1L1|p.W985Kfs*40|1|0.06|ENSG00000205038|chr8:109427107-109427108|-/CAAGACCACATCTCATGCTCCTTTGCCTCTCT|frameshift_variant;PKHD1L1|p.M2145Rfs*71|1|0.16|ENSG00000205038|chr8:109452207-109452207|T/-|frameshift_variant	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	469.254638671875	2	468.30547	934.596387	1.0232	0.00047916	-2.3729	-0.0011112	-1.3497	-0.00063206	468.3042623978981	86.747	1.1435	84.12	83.86	85.004	-2.6269					45	22	3	0	0	0	0.028476	1	7369	7369		12.812	0	1	137310			25452	9047	20817	20842	28405	28405					0.12647244927791235
KPHSGFHVAF	10	Unmodified	_KPHSGFHVAF_					0	0	0		ENSG00000165487|ENST00000382374|MICU2	ENSG00000165487|ENST00000382374|MICU2	ENSG00000165487|ENST00000382374|MICU2	MULTI-MSMS	OvCa9_classI_Rep2	2	563.7921142578125	2	563.793258	1125.57196	-1.061	-0.0005982	1.2566	0.00070848	0.1956	0.00011028	563.7936073770734	63.4	1.3112	60.656	60.374	61.685	-2.7444					82	24	5	0	0	0	0.28845	3	4793	4793;4800;4807		82.241	27.464	1	477890			25453	6566	20818	20843	28406;28407;28408	28406					0.014199847742702332
KPHSGFHVAF	10	Unmodified	_KPHSGFHVAF_					0	0	0		ENSG00000165487|ENST00000382374|MICU2	ENSG00000165487|ENST00000382374|MICU2	ENSG00000165487|ENST00000382374|MICU2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	563.793258	1125.57196	1.5461	0.00087168	-1.582	-0.00089189	-0.035855	-2.0215E-05	563.7921931300717	64.521	1.1646	61.037	60.775	61.939	-3.484	0.19077	-0.00072721	NaN	82.241	65	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	688560			25454	6566	20818	20843							0.014199847742702332
KPIARLIL	8	Unmodified	_KPIARLIL_					0	0	0			REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	462.32476806640625	2	462.323663	922.632772	-1.0288	-0.00047566	0.64098	0.00029634	-0.38786	-0.00017932	462.32384863852093	82.511	2.5875	80.215	79.684	82.272	-2.2963					118	53	4	0	0	0	0.67745	2	4653	4653;4658		47.916	0	1	920910	+		25455	17513	20819	20844	28409;28410	28409					0.16836121824519523
KPIARLIL	8	Unmodified	_KPIARLIL_					0	0	0			REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	462.324462890625	2	462.323663	922.632772	-1.0676	-0.00049358	0.69598	0.00032177	-0.37164	-0.00017182	462.3238381907604	91.619	1.0389	89.595	89.231	90.27	-2.0241					55	20	4	0	0	0	0.61758	1	5767	5767		60.294	7.9948	1	405380	+		25456	17513	20819	20844	28411	28411					0.16836121824519523
KPIEQLLGF	9	Unmodified	_KPIEQLLGF_					0	0	0		ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	ENSG00000166295|ENST00000299381|ANAPC16	MSMS	OvCa9_classI_Rep4_	4	522.8067626953125	2	522.808042	1043.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.87	1	118.52	118.02	119.02	-1.3444								0	0	0	0.14175	1	11261	11261		65.465	12.114	1				25457	6662	20820	20845	28412	28412					0.08147503999771288
KPIFHSLNC	9	Unmodified	_KPIFHSLNC_					0	0	0			REV__ENST00000321867.5_1_12:132406406-132406787:+|nuORF	REV__ENST00000321867.5_1_12:132406406-132406787:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2933349609375	2	529.776219	1057.53789	-0.65126	-0.00034502	3.9909	0.0021143	3.3396	0.0017693	529.7780682405207	35.188	0.24144	35.188	35.004	35.246	0					7	4	2	0	0	0	0.027462	1	1745	1745		16.473	0	1	16498	+		25458	24453	20821	20846	28413	28413					0.011418202910135733
KPIFSKIVSL	10	Unmodified	_KPIFSKIVSL_					0	0	0		ENSG00000130741|ENST00000253039|EIF2S3	ENSG00000130741|ENST00000253039|EIF2S3	ENSG00000130741|ENST00000253039|EIF2S3	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.3609619140625	2	566.360442	1130.70633	-0.29824	-0.00016891	0.4014	0.00022734	0.10316	5.8425E-05	566.3604606947199	100.45	0.96741	98.185	97.825	98.792	-2.2665					58	18	4	0	0	0	0.53807	2	8994	8994;9005		49.536	7.1399	1	327330			25459	4008	20822	20847	28414;28415	28414					0.1462062547630012
KPIHAELGI	9	Unmodified	_KPIHAELGI_					0	0	0		ENST00000583139.1_3:124870318-124870384:-|nuORF	ENST00000583139.1_3:124870318-124870384:-|nuORF	ENST00000583139.1_3:124870318-124870384:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	489.2916564941406	2	489.292559	976.570566	-0.29489	-0.00014429	-0.11707	-5.7281E-05	-0.41196	-0.00020157	489.2924862097453	60.206	1.6231	57.436	56.83	58.453	-2.7702					62	30	3	0	0	0	0.44294	1	4432	4432		47.916	5.5195	1	524080			25460	14010	20823	20848	28416	28416					0.0813435068552053
KPIIFTFR	8	Unmodified	_KPIIFTFR_					0	0	0		tr|A0A7D6VS79|A0A7D6VS79_9CLOT3-dehydroquinatedehydrataseOS=ClostridiumintestinaleOX=36845GN=aroDPE=3SV=1	tr|A0A7D6VS79|A0A7D6VS79_9CLOT3-dehydroquinatedehydrataseOS=ClostridiumintestinaleOX=36845GN=aroDPE=3SV=1	tr|A0A7D6VS79|A0A7D6VS79_9CLOT3-dehydroquinatedehydrataseOS=ClostridiumintestinaleOX=36845GN=aroDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	511.3101501464844	2	511.313295	1020.61204	-1.151	-0.0005885	-3.368	-0.0017221	-4.5189	-0.0023106	511.31154424823063	53.764	1.5438	50.951	50.578	52.122	-2.8139					82	30	5	0	0	0	0.61436	1	3645	3645		60.972	8.0352	1	1114000			25461	34994	20824	20849	28417	28417					0.10255531444840926
KPIILRAL	8	Unmodified	_KPIILRAL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP;DSP|p.R1308Pfs*18|1|0.56|ENSG00000096696|chr6:7580109-7580110|-/C|frameshift_variant;DSP|p.R1725Qfs*9|1|0.06|ENSG00000096696|chr6:7581363-7581364|-/A|frameshift_variant	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OvCa9_classI_Rep2	2	462.3238525390625	2	462.323663	922.632772	0.31728	0.00014669	-0.44559	-0.00020601	-0.12831	-5.9321E-05	462.32333321447794	81.386	1.7539	79.737	79.415	81.169	-1.6485					91	33	4	0	0	0	0.67745	1	6925	6925		47.916	9.1095	1	679600			25462	1949	20825	20850	28418	28418					0.16836121824496786
KPIILRAL	8	Unmodified	_KPIILRAL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP;DSP|p.R1308Pfs*18|1|0.56|ENSG00000096696|chr6:7580109-7580110|-/C|frameshift_variant;DSP|p.R1725Qfs*9|1|0.06|ENSG00000096696|chr6:7581363-7581364|-/A|frameshift_variant	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OvCa9_classI_Rep3	3	462.3240966796875	2	462.323663	922.632772	-1.0288	-0.00047566	0.64098	0.00029634	-0.38786	-0.00017932	462.32384863852093	82.511	2.5875	80.215	79.684	82.272	-2.2963					118	53	4	0	0	0	0.73938	1	4664	4664		31.955	1.4512	1	920910			25463	1949	20825	20850	28419	28419					0.16836121824496786
KPIILRAL	8	Unmodified	_KPIILRAL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP;DSP|p.R1308Pfs*18|1|0.56|ENSG00000096696|chr6:7580109-7580110|-/C|frameshift_variant;DSP|p.R1725Qfs*9|1|0.06|ENSG00000096696|chr6:7581363-7581364|-/A|frameshift_variant	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.3246765136719	2	462.323663	922.632772	-0.86535	-0.00040007	0.8667	0.00040069	0.0013422	6.2052E-07	462.3239230534907	82.848	1.8369	80.165	79.782	81.619	-2.683					88	37	4	0	0	0	0.42208	3	6879	6867;6879;6891		85.359	16.875	1	783480			25464	1949	20825	20850	28420;28421;28422	28421					0.16836121824496786
KPIKLSWD	8	Unmodified	_KPIKLSWD_					0	0	0			REV__ENSG00000124942|ENST00000378024|AHNAK	REV__ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.7866516113281	2	493.78711	985.559667	-0.82091	-0.00040535	-3.8194	-0.001886	-4.6403	-0.0022913	493.785226963214	42.316	2.1756	39.336	38.645	40.82	-2.9804					124	41	5	0	0	0	0.60331	1	1935	1935		63.306	2.3343	1	4863300	+		25465	18711	20826	20851	28423	28423					0.06630948311226348
KPIKRDLIL	9	Unmodified	_KPIKRDLIL_					0	0	0		ENSG00000142347|ENST00000644032|MYO1F	ENSG00000142347|ENST00000644032|MYO1F	ENSG00000142347|ENST00000644032|MYO1F	MULTI-MSMS	OvCa9_classI_Rep3	3	548.365478515625	2	548.366059	1094.71756	0.34637	0.00018994	-0.49439	-0.00027111	-0.14802	-8.1168E-05	548.3655745449837	67.748	1.9986	64.86	64.54	66.539	-2.8873					104	39	4	0	0	0	0.56189	1	2929	2929		36.447	0	1	404220			25466	4968	20827	20852	28424	28424					0.17399447570460325
KPILFAIVN	9	Unmodified	_KPILFAIVN_					0	0	0			REV__tr|A0A553SU60|A0A553SU60_NIACIRodshape-determiningproteinMreDOS=NialliacirculansOX=1397GN=CEQ21_06420PE=4SV=1	REV__tr|A0A553SU60|A0A553SU60_NIACIRodshape-determiningproteinMreDOS=NialliacirculansOX=1397GN=CEQ21_06420PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.81842041015625	2	507.820953	1013.62735	-2.0904	-0.0010616	-2.4016	-0.0012196	-4.4921	-0.0022812	507.81969227786175	62.868	2.0387	60.124	59.646	61.685	-2.7444					100	38	5	0	0	0	0.21395	1	4740	4740		73.975	8.5094	1	331210	+		25467	31041	20828	20853	28425	28425					0.12108398242025942
KPILIIRA	8	Unmodified	_KPILIIRA_					0	0	0			REV__L1PA7_dup9238|chr10:48372221-48377370:+|1.4943041569802586|0.2795461482764699|2.42|429.0|77|2|sense	REV__L1PA7_dup9238|chr10:48372221-48377370:+|1.4943041569802586|0.2795461482764699|2.42|429.0|77|2|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	462.32373046875	2	462.323663	922.632772	0.31728	0.00014669	-0.44559	-0.00020601	-0.12831	-5.9321E-05	462.32333321447794	81.386	1.7539	79.737	79.415	81.169	-1.6485					91	33	4	0	0	0	0.7224	1	6906	6906		38.806	6.8513	1	679600	+		25468	28576	20829	20854	28426	28426					0.16836121824496786
KPILPKIIPSK	11	Unmodified	_KPILPKIIPSK_					0	0	0			REV__nc|ENSG00000198554|O75717-2|WDHD1	REV__nc|ENSG00000198554|O75717-2|WDHD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.89959716796875	3	411.947953	1232.82203	0.52606	0.00021671	-1.2554	-0.00051716	-0.72935	-0.00030045	411.9473854537216	41.397	0.17509	41.397	41.33	41.505	0					5	3	2	0	0	0	0.026382	1	2590	2590		7.0192	0	1	79367	+		25469	23029	20830	20855	28427	28427					0.21493149327170613
KPILRNIN	8	Unmodified	_KPILRNIN_					0	0	0			REV__tr|A0A7D6VQJ5|A0A7D6VQJ5_9CLOTDNA-directedRNApolymerasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=rpoBPE=3SV=1	REV__tr|A0A7D6VQJ5|A0A7D6VQJ5_9CLOTDNA-directedRNApolymerasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=rpoBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.7923278808594	2	484.306001	966.597449	-0.076175	-3.6892E-05	0.35588	0.00017235	0.2797	0.00013546	484.3061401587448	51.237	0.42673	51.237	51.078	51.504	0					12	9	2	0	0	0	0.028476	1	3949	3949		47.916	0	1	113660	+		25470	31331	20831	20856	28428	28428					0.11281459296696994
KPINPRPSL	9	Unmodified	_KPINPRPSL_					0	0	0		nc|ENSG00000116690|Q92954-5|PRG4;nc|ENSG00000116690|Q92954-4|PRG4;nc|ENSG00000116690|Q92954-3|PRG4;nc|ENSG00000116690|Q92954-6|PRG4;nc|ENSG00000116690|Q92954-2|PRG4;ENSG00000116690|ENST00000445192|PRG4	nc|ENSG00000116690|Q92954-5|PRG4	nc|ENSG00000116690|Q92954-5|PRG4	MULTI-MSMS	OvCa9_classI_Rep2	2	511.31097412109375	2	511.311284	1020.60801	-1.151	-0.0005885	0.56578	0.00028929	-0.58518	-0.00029921	511.31154424823063	53.764	1.5438	50.951	50.578	52.122	-2.8139					82	30	5	0	0	0	0.043101	7	3651	3636;3651;3657;3663;3669;3676;3683		124.08	39.165	1	1114000			25471	3198	20832	20857	28429;28430;28431;28432;28433;28434;28435	28430					0.09853441951122477
KPINPRPSL	9	Unmodified	_KPINPRPSL_					0	0	0		nc|ENSG00000116690|Q92954-5|PRG4;nc|ENSG00000116690|Q92954-4|PRG4;nc|ENSG00000116690|Q92954-3|PRG4;nc|ENSG00000116690|Q92954-6|PRG4;nc|ENSG00000116690|Q92954-2|PRG4;ENSG00000116690|ENST00000445192|PRG4	nc|ENSG00000116690|Q92954-5|PRG4	nc|ENSG00000116690|Q92954-5|PRG4	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.3127136230469	2	511.311284	1020.60801	-1.0752	-0.00054978	0.39288	0.00020088	-0.68235	-0.0003489	511.31148128363685	54.098	2.3501	50.85	50.466	52.816	-3.2474					121	45	5	0	0	0	0.025955	5	3349	3326;3337;3349;3362;3374		139.97	51.58	1	3782700			25472	3198	20832	20857	28436;28437;28438;28439;28440	28438					0.09853441951122477
KPINRKVT	8	Unmodified	_KPINRKVT_					0	0	0			REV__ENSG00000075131|ENST00000261881|TIPIN	REV__ENSG00000075131|ENST00000261881|TIPIN	MULTI-MSMS	OvCa9_classI_Rep2	2	478.3059997558594	2	478.306001	954.597449	-0.0091048	-4.3549E-06	-0.34741	-0.00016617	-0.35651	-0.00017052	478.3057665530243	40.536	2.2179	37.826	37.551	39.769	-2.7097					109	44	4	0	0	0	0.60331	1	2055	2055		63.306	0	1	1098200	+		25473	16961	20833	20858	28441	28441					0.11833459296701676
KPINSSLLMR	10	Oxidation (M)	_KPINSSLLM(Oxidation (M))R_		KPINSSLLM(1)R		KPINSSLLM(60)R	0	0	1			REV__nc|ENSG00000113448|Q08499-6|PDE4D	REV__nc|ENSG00000113448|Q08499-6|PDE4D	MULTI-MSMS	OvCa9_classI_Rep2	2	587.83447265625	2	587.834265	1173.65398	-1.4259	-0.00083822	1.2564	0.00073856	-0.16953	-9.9653E-05	587.8349083775643	53.25	4.0724	50.436	49.985	54.058	-2.8139					184	81	4	0	0	0	0.45822	1	3580	3580		60.118	10.582	1	898450	+		25474	28803	20834	20859	28442	28442		633			0.07409719071074505
KPINVRVTTM	10	Oxidation (M)	_KPINVRVTTM(Oxidation (M))_		KPINVRVTTM(1)		KPINVRVTTM(100)	0	0	1		ENSG00000092820|ENST00000367075|EZR;nc|ENSG00000137710|P35241-3|RDX;ENST00000476189.1_1_6:159209469-159239197:-|nuORF;EZR-PARP3|1|fusion	ENSG00000092820|ENST00000367075|EZR;EZR-PARP3|1|fusion	EZR-PARP3|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	587.8341674804688	2	587.834265	1173.65398	-1.4259	-0.00083822	1.2564	0.00073856	-0.16953	-9.9653E-05	587.8349083775643	53.25	4.0724	50.436	49.985	54.058	-2.8139					184	81	4	0	0	0	0.13794	6	3585	3585;3591;3597;3615;3623;3634		104.01	27.067	1	898450			25475	14317;1900	20835	20860	28443;28444;28445;28446;28447;28448	28443		67			0.07409719071051768
KPINVRVTTM	10	Oxidation (M)	_KPINVRVTTM(Oxidation (M))_		KPINVRVTTM(1)		KPINVRVTTM(140)	0	0	1		ENSG00000092820|ENST00000367075|EZR;nc|ENSG00000137710|P35241-3|RDX;ENST00000476189.1_1_6:159209469-159239197:-|nuORF;EZR-PARP3|1|fusion	ENSG00000092820|ENST00000367075|EZR;EZR-PARP3|1|fusion	EZR-PARP3|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	587.8355102539062	2	587.834265	1173.65398	-1.162	-0.00068309	0.71106	0.00041799	-0.45098	-0.0002651	587.8348247212562	53.537	3.213	50.329	49.944	53.157	-3.208					169	62	6	0	0	0	0.030279	4	3265	3265;3277;3301;3313		136.27	37.639	1	4294100			25476	14317;1900	20835	20860	28449;28450;28451;28452	28449		67			0.07409719071051768
KPINVRVTTM	10	Oxidation (M)	_KPINVRVTTM(Oxidation (M))_					0	0	1		ENSG00000092820|ENST00000367075|EZR;nc|ENSG00000137710|P35241-3|RDX;ENST00000476189.1_1_6:159209469-159239197:-|nuORF;EZR-PARP3|1|fusion	ENSG00000092820|ENST00000367075|EZR;EZR-PARP3|1|fusion	EZR-PARP3|1|fusion	MULTI-MATCH	OvCa9_classI_Rep3	3		2	587.834265	1173.65398	0.68662	0.00040362	-0.90818	-0.00053386	-0.22156	-0.00013024	587.8335133651007	53.737	0.20261	50.539	50.391	50.593	-3.1978	0.10418	-0.0023002	NaN	136.27	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7332.2			25477	14317;1900	20835	20860				67			0.07409719071051768
KPINVRVTTM	10	Unmodified	_KPINVRVTTM_					0	0	0		ENSG00000092820|ENST00000367075|EZR;nc|ENSG00000137710|P35241-3|RDX;ENST00000476189.1_1_6:159209469-159239197:-|nuORF;EZR-PARP3|1|fusion	ENSG00000092820|ENST00000367075|EZR;EZR-PARP3|1|fusion	EZR-PARP3|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	579.8355712890625	2	579.836808	1157.65906	-0.59682	-0.00034606	0.35288	0.00020461	-0.24394	-0.00014145	579.8369831499307	64.403	2.0597	61.678	61.181	63.24	-2.7245					115	39	4	0	0	0	0.10472	10	4917	4885;4889;4901;4907;4913;4917;4923;4932;4938;4944		112.41	41.595	1	1521600			25478	14317;1900	20835	20861	28453;28454;28455;28456;28457;28458;28459;28460;28461;28462	28458					0.08654022933660599
KPINVRVTTM	10	Unmodified	_KPINVRVTTM_					0	0	0		ENSG00000092820|ENST00000367075|EZR;nc|ENSG00000137710|P35241-3|RDX;ENST00000476189.1_1_6:159209469-159239197:-|nuORF;EZR-PARP3|1|fusion	ENSG00000092820|ENST00000367075|EZR;EZR-PARP3|1|fusion	EZR-PARP3|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.8375854492188	2	579.836808	1157.65906	-0.9155	-0.00053084	0.73119	0.00042397	-0.18431	-0.00010687	579.8372239940724	65.236	2.1385	61.751	61.407	63.546	-3.4854					125	43	5	0	0	0	0.11632	4	4695	4671;4682;4695;4725		109.48	39.851	1	2731200			25479	14317;1900	20835	20861	28463;28464;28465;28466	28465					0.08654022933660599
KPINVRVTTM	10	Unmodified	_KPINVRVTTM_					0	0	0		ENSG00000092820|ENST00000367075|EZR;nc|ENSG00000137710|P35241-3|RDX;ENST00000476189.1_1_6:159209469-159239197:-|nuORF;EZR-PARP3|1|fusion	ENSG00000092820|ENST00000367075|EZR;EZR-PARP3|1|fusion	EZR-PARP3|1|fusion	MULTI-MATCH	OvCa9_classI_Rep3	3		2	579.836808	1157.65906	0.29992	0.00017391	-0.65426	-0.00037936	-0.35434	-0.00020546	579.83631147005	64.917	0.45333	61.923	61.546	61.999	-2.9933	0.13922	-0.001241	NaN	112.41	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12458			25480	14317;1900	20835	20861							0.08654022933660599
KPIPKRSPPHV	11	Unmodified	_KPIPKRSPPHV_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	OvCa9_classI_Rep3	3	628.3839721679688	2	628.385314	1254.75608	-4.0512	-0.0025457	-0.39444	-0.00024786	-4.4456	-0.0027935	628.3849132400738	150.53	4.7174	149.58	148	152.71	-0.95647					178	94	2	0	0	0	0.70142	1	12763	12763		29.17	3.596	1	419100	+		25481	23199	20836	20862	28467	28467					0.13888753204946624
KPIQRTIL	8	Unmodified	_KPIQRTIL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OvCa9_classI_Rep2	2	484.81634521484375	2	484.816202	967.617851	-0.92839	-0.0004501	0.72443	0.00035122	-0.20396	-9.8884E-05	484.81643297200304	55.856	1.9338	53.052	52.482	54.415	-2.804					94	38	4	0	0	0	0.50747	1	3904	3904		76.774	13.468	1	432030			25482	6826	20837	20863	28468	28468					0.13274629956515582
KPIQRTIL	8	Unmodified	_KPIQRTIL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.8178405761719	2	484.816202	967.617851	0.030261	1.4671E-05	-0.35128	-0.00017031	-0.32102	-0.00015563	484.8159441887316	56.421	1.7765	53.127	52.718	54.495	-3.2944					89	34	4	0	0	0	0.53252	1	3621	3621		74.255	7.8258	1	841740			25483	6826	20837	20863	28469	28469					0.13274629956515582
KPIQRTILM	9	Oxidation (M)	_KPIQRTILM(Oxidation (M))_		KPIQRTILM(1)		KPIQRTILM(80)	0	0	1		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OvCa9_classI_Rep2	2	558.33349609375	2	558.333901	1114.65325	-0.35352	-0.00019738	0.24372	0.00013608	-0.1098	-6.1303E-05	558.3338590374088	55.955	2.4288	53.151	52.482	54.911	-2.804					91	48	3	0	0	0	0.17606	1	3931	3931		80.455	19.483	1	248710			25484	6826	20838	20864	28470	28470		209			0.10050924421989293
KPIQRTILM	9	Oxidation (M)	_KPIQRTILM(Oxidation (M))_		KPIQRTILM(1)		KPIQRTILM(100)	0	0	1		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.3345947265625	2	558.333901	1114.65325	0.88961	0.0004967	-1.0304	-0.00057533	-0.14083	-7.8629E-05	558.3331576396482	56.491	2.1313	53.196	52.516	54.647	-3.2944					93	41	4	0	0	0	0.084918	2	3616	3616;3627		101.25	32.466	1	799700			25485	6826	20838	20864	28471;28472	28471		209			0.10050924421989293
KPIQRTILM	9	Unmodified	_KPIQRTILM_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OvCa9_classI_Rep2	2	550.3348999023438	2	550.336444	1098.65834	0.57262	0.00031513	-1.2293	-0.00067655	-0.65671	-0.00036141	550.3357316353752	66.746	1.4881	64.051	63.617	65.105	-2.6958					65	29	3	0	0	0	0.59259	1	5195	5195		32.812	4.9302	1	370560			25486	6826	20838	20865	28473	28473					0.11295228284620862
KPIRAGLEAF	10	Unmodified	_KPIRAGLEAF_					0	0	0			REV__tr|A0A553SHF3|A0A553SHF3_NIACIATP-dependentzincmetalloproteaseFtsHOS=NialliacirculansOX=1397GN=ftsHPE=3SV=1	REV__tr|A0A553SHF3|A0A553SHF3_NIACIATP-dependentzincmetalloproteaseFtsHOS=NialliacirculansOX=1397GN=ftsHPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.2731323242188	2	551.324391	1100.63423	-0.47273	-0.00026063	-0.10009	-5.5183E-05	-0.57282	-0.00031581	551.3248485583288	51.016	0.21635	51.016	50.819	51.036	0					6	4	2	0	0	0	0.027021	1	3910	3910		15.642	3.435	1	83179	+		25487	29796	20839	20866	28474	28474					0.08793711122598324
KPIREPLLL	9	Unmodified	_KPIREPLLL_					0	0	0		tr|A0A553SHY1|A0A553SHY1_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_13820PE=4SV=1	tr|A0A553SHY1|A0A553SHY1_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_13820PE=4SV=1	tr|A0A553SHY1|A0A553SHY1_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_13820PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.831298828125	2	539.852784	1077.69102	2.1371	0.0011537	-2.8627	-0.0015454	-0.72552	-0.00039167	539.8513403521576	126.1	1.2502	125.02	124.61	125.86	-1.0715					32	23	2	0	0	0	0.027462	1	9805	9805		11.511	8.5816	1	24796			25488	33325	20840	20867	28475	28475					0.15527758679127146
KPIRRPSLF	9	Unmodified	_KPIRRPSLF_					0	0	0			REV__ENST00000515726.1_1_4:124318844-124319012:+|nuORF	REV__ENST00000515726.1_1_4:124318844-124319012:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.8177490234375	2	557.3482	1112.68185	-0.18216	-0.00010152	-1.6371	-0.00091244	-1.8193	-0.001014	557.3473935215089	92.436	0.96062	89.893	89.618	90.578	-2.5425					35	18	3	0	0	0	0.027462	1	8017	8017		17.365	0	1	52318	+		25489	27004	20841	20868	28476	28476					0.1300141011345204
KPIRRVEL	8	Unmodified	_KPIRRVEL_					0	0	0			REV__ENST00000315302.6_1_4:183063492-183063612:-|nuORF	REV__ENST00000315302.6_1_4:183063492-183063612:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.25982666015625	2	505.827101	1009.63965	-1.1343	-0.00057378	0.083974	4.2476E-05	-1.0504	-0.00053131	505.8270474223964	81.173	1.5073	78.463	78.052	79.559	-2.7106					53	30	3	0	0	0	0.028476	1	6656	6656		47.916	10.887	1	172390	+		25490	24397	20842	20869	28477	28477					0.13521434705069169
KPISTVGVSFV	11	Unmodified	_KPISTVGVSFV_					0	0	0			REV__tr|A0A553SSN7|A0A553SSN7_NIACINitrate/nitritetransporterOS=NialliacirculansOX=1397GN=CEQ21_03340PE=3SV=1	REV__tr|A0A553SSN7|A0A553SSN7_NIACINitrate/nitritetransporterOS=NialliacirculansOX=1397GN=CEQ21_03340PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3286743164062	2	567.331882	1132.64921	-0.48412	-0.00027465	-3.1025	-0.0017602	-3.5866	-0.0020348	567.3299446868054	145.54	4.8872	144.11	142.68	147.57	-1.4357					247	95	4	0	0	0	0.70142	1	14182	14182		29.17	5.6474	1	208760	+		25491	30854	20843	20870	28478	28478					0.0881915819995811
KPITICRR	8	Unmodified	_KPITICRR_					0	0	0			REV__ENST00000508503.5_1_3:98235702-98241699:-|nuORF	REV__ENST00000508503.5_1_3:98235702-98241699:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.78485107421875	2	493.800029	985.585505	-0.81519	-0.00040254	1.6447	0.00081217	0.82954	0.00040963	493.8021030303241	42.292	0.60685	39.311	39.116	39.723	-2.9804					18	11	2	0	0	0	0.028476	1	1994	1994		51.335	23.453	1	22986	+		25492	26914	20844	20871	28479	28479					0.09213519281865956
KPIVELKRSQ	10	Unmodified	_KPIVELKRSQ_					0	0	0		ENST00000399455.2_2_11:11944388-11950990:+|nuORF	ENST00000399455.2_2_11:11944388-11950990:+|nuORF	ENST00000399455.2_2_11:11944388-11950990:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	600.30078125	2	599.36933	1196.72411	0.046399	2.781E-05	-1.3869	-0.00083127	-1.3405	-0.00080346	599.3686383075851	66.515	0.53944	63.025	62.805	63.344	-3.4902					17	10	3	0	0	0	0.027118	1	4875	4875		13.454	0	1	32253			25493	11389	20845	20872	28480	28480					0.13361340731171367
KPIVHTAIK	9	Unmodified	_KPIVHTAIK_					0	0	0		tr|A0A553SH77|A0A553SH77_NIACIYdbS-likePHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12315PE=4SV=1	tr|A0A553SH77|A0A553SH77_NIACIYdbS-likePHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12315PE=4SV=1	tr|A0A553SH77|A0A553SH77_NIACIYdbS-likePHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12315PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	503.82513427734375	2	503.824027	1005.6335	0.26461	0.00013331	-0.099833	-5.0298E-05	0.16477	8.3017E-05	503.82388925657506	73.837	0.41975	73.837	73.636	74.056	0					22	10	3	0	0	0	0.37182	1	7280	7280		54.722	3.3869	1	1061000			25494	33246	20846	20873	28481	28481					0.13090916473538527
KPIVIETQLYV	11	Unmodified	_KPIVIETQLYV_					0	0	0		ENSG00000108231|ENST00000371418|LGI1;nc|ENSG00000108231|O95970-3|LGI1	ENSG00000108231|ENST00000371418|LGI1	ENSG00000108231|ENST00000371418|LGI1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	435.2467346191406	3	434.927106	1301.75949	-0.55902	-0.00024313	-0.96806	-0.00042104	-1.5271	-0.00066417	434.92666675577004	44.145	0.59967	41.137	40.793	41.393	-3.0074					24	11	3	0	0	0	0.025819	1	2175	2175		20.315	0	1	16027			25495	2640	20847	20874	28482	28482					0.12067958468333018
KPIVLMKP	8	Unmodified	_KPIVLMKP_					0	0	0		ENSG00000105771|ENST00000270066|SMG9;nc|ENSG00000105771|Q9H0W8-2|SMG9;ENST00000595700.5_1_19:44242246-44254893:-|nuORF	ENSG00000105771|ENST00000270066|SMG9	ENSG00000105771|ENST00000270066|SMG9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.28045654296875	2	463.298799	924.583045	0.44708	0.00020713	-0.76249	-0.00035326	-0.31541	-0.00014613	463.2976237605203	86.374	2.3938	83.747	83.363	85.757	-2.6269					98	47	4	0	0	0	0.028476	1	7441	7441		7.6903	0	1	661780			25496	2497	20848	20875	28483	28483					0.1177367082419778
KPIVYFLAG	9	Unmodified	_KPIVYFLAG_					0	0	0		ENSG00000172935|ENST00000309099|MRGPRF	ENSG00000172935|ENST00000309099|MRGPRF	ENSG00000172935|ENST00000309099|MRGPRF	MULTI-SECPEP	OvCa9_classI_Rep2	2	504.95123291015625	2	504.299853	1006.58515	-1.096	-0.00055269	-3.0262	-0.0015261	-4.1221	-0.0020788	504.29810010224384	76.398	1.0966	74.544	74.255	75.351	-1.854					33	20	2	0	0	0	0.027433	1	6319	6319		38.806	4.6336	1	116970			25497	7331	20849	20876	28484	28484					0.08212422833662458
KPIVYFLAG	9	Unmodified	_KPIVYFLAG_					0	0	0		ENSG00000172935|ENST00000309099|MRGPRF	ENSG00000172935|ENST00000309099|MRGPRF	ENSG00000172935|ENST00000309099|MRGPRF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	504.299853	1006.58515	-1.2793	-0.00064514	-2.6503	-0.0013365	-3.9296	-0.0019817	504.2983434616147	76.798	1.1995	74.427	74.085	75.285	-2.3715	-0.16866	0.00017276	NaN	38.806	32	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150220			25498	7331	20849	20876							0.08212422833662458
KPIVYFLAG	9	Unmodified	_KPIVYFLAG_					0	0	0		ENSG00000172935|ENST00000309099|MRGPRF	ENSG00000172935|ENST00000309099|MRGPRF	ENSG00000172935|ENST00000309099|MRGPRF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	504.299853	1006.58515	-0.61779	-0.00031155	-3.7576	-0.001895	-4.3754	-0.0022065	504.29767944454073	77.634	0.87289	74.818	74.584	75.457	-2.8165	0.2223	-0.00094412	NaN	38.806	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105990			25499	7331	20849	20876							0.08212422833662458
KPIWEVAP	8	Unmodified	_KPIWEVAP_					0	0	0			REV__ADAMTS1|p.V753Efs*8|1|0.15|ENSG00000154734|chr21:26838225-26838226|-/GAGGGCTAAAGCTGCGAATT|frameshift_variant	REV__ADAMTS1|p.V753Efs*8|1|0.15|ENSG00000154734|chr21:26838225-26838226|-/GAGGGCTAAAGCTGCGAATT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.2562255859375	2	470.268553	938.522553	0.21321	0.00010027	-3.6268	-0.0017056	-3.4136	-0.0016053	470.2663935178327	46.555	0.43964	46.555	46.369	46.809	0					23	9	4	0	0	0	0.028476	1	3310	3310		11.511	0	1	303850	+		25500	15564	20850	20877	28485	28485					0.05083276765469691
KPIWQRPS	8	Unmodified	_KPIWQRPS_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;HSP90B1|p.I687Vfs*9|1|0.07|ENSG00000166598|chr12:103946648-103946649|-/GTGCTCCAGGTACTTGGGACTC|frameshift_variant;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000550479.1_1_12:104332030-104335334:+|nuORF;ENST00000559111.1_1_15:99798828-99798870:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.266357421875	2	506.290351	1010.56615	0.81573	0.000413	-1.5806	-0.00080026	-0.7649	-0.00038726	506.28958200852674	87.352	1.6241	85.921	84.856	86.48	-1.4311					60	31	3	0	0	0	0.028476	1	7533	7533		55.504	14.726	1	72380			25501	6697	20851	20878	28486	28486					0.061288862626156515
KPKAPPPSL	9	Unmodified	_KPKAPPPSL_					0	0	0		nc|ENSG00000086065|Q9NZZ3-2|CHMP5;ENSG00000086065|ENST00000223500|CHMP5	nc|ENSG00000086065|Q9NZZ3-2|CHMP5	nc|ENSG00000086065|Q9NZZ3-2|CHMP5	MULTI-MSMS	OvCa9_classI_Rep2	2	467.7893981933594	2	467.789653	933.564752	0.060124	2.8126E-05	-0.48203	-0.00022549	-0.42191	-0.00019736	467.7892957824747	44.579	2.0957	41.869	41.303	43.399	-2.7097					105	41	4	0	0	0	0.010652	14	2542	2526;2532;2536;2542;2548;2554;2560;2566;2572;2581;2585;2591;2597;2605		166.68	87.228	1	503650			25502	1748	20852	20879	28487;28488;28489;28490;28491;28492;28493;28494;28495;28496;28497;28498;28499;28500	28490					0.09531252173849225
KPKAPPPSL	9	Unmodified	_KPKAPPPSL_					0	0	0		nc|ENSG00000086065|Q9NZZ3-2|CHMP5;ENSG00000086065|ENST00000223500|CHMP5	nc|ENSG00000086065|Q9NZZ3-2|CHMP5	nc|ENSG00000086065|Q9NZZ3-2|CHMP5	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.7904968261719	2	467.789653	933.564752	-0.84076	-0.0003933	0.078534	3.6737E-05	-0.76222	-0.00035656	467.7896725567256	44.78	2.7892	41.741	41.258	44.047	-3.0385					154	53	5	0	0	0	0.0078217	10	2235	2223;2235;2246;2258;2270;2282;2294;2306;2320;2339		180.93	87.228	1	2362000			25503	1748	20852	20879	28501;28502;28503;28504;28505;28506;28507;28508;28509;28510	28502					0.09531252173849225
KPKEADESL	9	Unmodified	_KPKEADESL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OvCa9_classI_Rep2	2	508.7664489746094	2	508.766571	1015.51859	-2.5431	-0.0012939	2.0709	0.0010536	-0.47219	-0.00024023	508.7675091980884	37.121	1.4274	34.411	33.942	35.37	-2.7097					85	28	4	0	0	0	0.035142	9	1647	1627;1630;1635;1641;1647;1653;1659;1679;1686		131.03	36.563	1	798860			25504	4552	20853	20880	28511;28512;28513;28514;28515;28516;28517;28518;28519	28515					0.011451424810957178
KPKEADESL	9	Unmodified	_KPKEADESL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MSMS	OvCa9_classI_Rep4_	4	508.766845703125	2	508.766571	1015.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.449	1	33.6	33.1	34.1	-2.849								0	0	0	0.028307	1	1258	1258		90.601	13.827	1				25505	4552	20853	20880	28520	28520					0.011451424810957178
KPKEADESL	9	Unmodified	_KPKEADESL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MSMS	OvCa9_classI_Rep4_	4	508.76629638671875	2	508.766571	1015.51859	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.528	1	33.635	33.135	34.135	-2.8925								0	0	0	0.025443	1	1267	1267		124.08	41.84	1				25506	4552	20853	20880	28521	28521					0.011451424810957178
KPKEKKKGP	9	Unmodified	_KPKEKKKGP_					0	0	0		ENSG00000237452|ENST00000457052|MEIOSIN	ENSG00000237452|ENST00000457052|MEIOSIN	ENSG00000237452|ENST00000457052|MEIOSIN	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.34521484375	2	520.334759	1038.65496	3.956	0.0020584	-4.0654	-0.0021154	-0.10941	-5.6929E-05	520.332453498584	25.113	0.91686	22.404	22.29	23.207	-2.7097					29	19	2	0	0	0	0.027462	1	285	285		56.721	14.325	1	96974			25507	9317	20854	20881	28522	28522					0.13718301502285613
KPKELQQAR	9	Unmodified	_KPKELQQAR_					0	0	0		ARCN1|p.A163P|1|0.2|ENSG00000095139|chr11:118583848-118583848|G/C|missense_variant	ARCN1|p.A163P|1|0.2|ENSG00000095139|chr11:118583848-118583848|G/C|missense_variant	ARCN1|p.A163P|1|0.2|ENSG00000095139|chr11:118583848-118583848|G/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.7915649414062	2	549.324922	1096.63529	-0.98301	-0.00053999	0.22894	0.00012576	-0.75407	-0.00041423	549.3249270787226	44.314	0.71626	44.314	44.123	44.84	0					28	15	3	0	0	0	0.027462	1	3011	3011		10.265	3.0719	1	1585300			25508	104	20855	20882	28523	28523					0.0908392549151813
KPKFPSDKEKG	11	Unmodified	_KPKFPSDKEKG_					0	0	0			REV__ENSG00000117222|ENST00000264515|RBBP5	REV__ENSG00000117222|ENST00000264515|RBBP5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	631.830078125	2	630.85097	1259.68739	1.2537	0.00079087	-1.5488	-0.00097706	-0.29513	-0.00018618	630.8494798609047	96.912	0.592	94.486	94.22	94.812	-2.4256					17	11	2	0	0	0	0.025306	1	8595	8595		37.508	0	1	28687	+		25509	18343	20856	20883	28524	28524					0.06793044114601798
KPKGDKDKPIK	11	Unmodified	_KPKGDKDKPIK_					0	0	0			REV__ENST00000538134.1_1_11:114271453-114272668:+|nuORF	REV__ENST00000538134.1_1_11:114271453-114272668:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	627.3883666992188	2	627.382437	1252.75032	0.45246	0.00028386	-0.20501	-0.00012862	0.24745	0.00015525	627.381941059398	164.3	2.2705	164.3	163.48	165.75	0					225	84	3	0	0	0	0.72516	1	19233	19233		13.454	1.8181	1	178050	+		25510	16985	20857	20884	28525	28525					0.1340560990265658
KPKGPTFFSK	10	Unmodified	_KPKGPTFFSK_					0	0	0			REV__nc|ENSG00000083642|Q9NTI5-2|PDS5B	REV__nc|ENSG00000083642|Q9NTI5-2|PDS5B	MULTI-MSMS	OvCa9_classI_Rep2	2	568.8259887695312	2	568.826766	1135.63898	0.50848	0.00028924	-0.7439	-0.00042315	-0.23542	-0.00013391	568.8261808138619	127.14	1.0877	126.9	126.64	127.73	-0.2359					54	21	4	0	0	0	0.43433	1	12439	12439		63.534	15.574	1	176260	+		25511	17107	20858	20885	28526	28526					0.07658595265365875
KPKGPTFFSK	10	Unmodified	_KPKGPTFFSK_					0	0	0			REV__nc|ENSG00000083642|Q9NTI5-2|PDS5B	REV__nc|ENSG00000083642|Q9NTI5-2|PDS5B	MULTI-MSMS	OvCa9_classI_Rep4_	4	568.8244018554688	2	568.826766	1135.63898	0.43807	0.00024918	-0.54727	-0.0003113	-0.10921	-6.212E-05	568.826325230732	128.26	1.213	126.82	126.55	127.76	-1.4357					50	23	4	0	0	0	0.42082	2	12253	12253;12263		65.465	19.295	1	201430	+		25512	17107	20858	20885	28527;28528	28527					0.07658595265365875
KPKGPTFFSK	10	Unmodified	_KPKGPTFFSK_					0	0	0			REV__nc|ENSG00000083642|Q9NTI5-2|PDS5B	REV__nc|ENSG00000083642|Q9NTI5-2|PDS5B	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	568.826766	1135.63898	0.50848	0.00028924	-0.7439	-0.00042315	-0.23542	-0.00013391	568.8261808138619	127.14	1.0877	126.9	126.64	127.73	-0.2359	0.018693	3.4717E-06	NaN	65.465	54	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176260	+		25513	17107	20858	20885							0.07658595265365875
KPKGPTFFSK	10	Unmodified	_KPKGPTFFSK_					0	0	0			REV__nc|ENSG00000083642|Q9NTI5-2|PDS5B	REV__nc|ENSG00000083642|Q9NTI5-2|PDS5B	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	568.826766	1135.63898	0.43807	0.00024918	-0.54727	-0.0003113	-0.10921	-6.212E-05	568.826325230732	128.26	1.213	126.82	126.55	127.76	-1.4357	-0.061997	0.00022717	NaN	65.465	50	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201430	+		25514	17107	20858	20885							0.07658595265365875
KPKGVDFDDE	10	Unmodified	_KPKGVDFDDE_					0	0	0			REV__ENST00000552138.5_1_14:105821400-105836438:+|nuORF	REV__ENST00000552138.5_1_14:105821400-105836438:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.818603515625	2	575.274761	1148.53497	-1.9067	-0.0010969	-2.6079	-0.0015003	-4.5146	-0.0025972	575.2733726581972	93.364	0.90646	91.402	91.079	91.986	-1.9617					18	17	2	0	0	0	0.026659	1	5975	5975		37.812	0	1	36328	+		25515	22121	20859	20886	28529	28529					-0.033357763528101714
KPKGVIESLI	10	Unmodified	_KPKGVIESLI_					0	0	0			REV__tr|A0A7D6ZE12|A0A7D6ZE12_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17820PE=4SV=1	REV__tr|A0A7D6ZE12|A0A7D6ZE12_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17820PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.3187866210938	2	542.342249	1082.66995	-1.6901	-0.00091664	-2.6219	-0.001422	-4.3121	-0.0023386	542.3405151328573	43.441	0.36851	40.433	40.22	40.589	-3.0074					9	6	2	0	0	0	0.026968	1	2099	2099		29.17	13.528	1	5778.9	+		25516	31938	20860	20887	28530	28530					0.1319174857960661
KPKHKRKRKSL	11	Unmodified	_KPKHKRKRKSL_					0	0	0		ENSG00000152217|ENST00000649279|SETBP1	ENSG00000152217|ENST00000649279|SETBP1	ENSG00000152217|ENST00000649279|SETBP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.2676696777344	3	469.3124	1404.91537	-0.65428	-0.00030706	2.383	0.0011184	1.7287	0.00081132	469.64790183513287	44.247	0.5557	41.24	40.989	41.545	-3.0074					22	10	3	0	0	0	0.026482	1	2153	2153		4.8861	0	1	39351			25517	5611	20861	20888	28531	28531					0.22910886552972443
KPKIAEKL	8	Unmodified	_KPKIAEKL_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa9_classI_Rep2	2	463.8050537109375	2	463.805303	925.596052	-0.65055	-0.00030173	0.52362	0.00024286	-0.12693	-5.8872E-05	463.80540716889675	69.215	1.4488	66.594	66.266	67.715	-2.6203					67	28	4	0	0	0	0.65062	1	5503	5503		53.351	0	1	411020	+		25518	28942;32737	20862	20889	28532	28532					0.13027825207950627
KPKIATANL	9	Unmodified	_KPKIATANL_					0	0	0		ENSG00000119777|ENST00000238788|TMEM214;nc|ENSG00000119777|Q6NUQ4-2|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	MULTI-MSMS	OvCa9_classI_Rep2	2	478.2989807128906	2	478.300384	954.586216	-1.3958	-0.0006676	0.74282	0.00035529	-0.65296	-0.00031231	478.300797234432	52.175	1.9776	49.362	48.552	50.53	-2.8129					86	39	4	0	0	0	0.37182	1	3460	3460		54.722	5.2808	1	346960			25519	3394	20863	20890	28533	28533					0.10710637202555517
KPKIATANL	9	Unmodified	_KPKIATANL_					0	0	0		ENSG00000119777|ENST00000238788|TMEM214;nc|ENSG00000119777|Q6NUQ4-2|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.29864501953125	2	478.300384	954.586216	-0.26146	-0.00012506	-0.8577	-0.00041024	-1.1192	-0.0005353	478.3000234419401	52.48	1.8643	49.272	48.692	50.556	-3.208					84	36	4	0	0	0	0.2784	1	3152	3152		65.465	8.7443	1	1238200			25520	3394	20863	20890	28534	28534					0.10710637202555517
KPKKGGGISF	10	Unmodified	_KPKKGGGISF_					0	0	0		ENST00000467099.6_1_17:18003545-18010551:+|nuORF;ENSG00000108591|ENST00000225729|DRG2	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8059387207031	2	509.805834	1017.59712	0.31382	0.00015999	-0.67327	-0.00034324	-0.35945	-0.00018325	509.8053412397936	40.93	1.3292	38.22	37.946	39.275	-2.7097					71	26	4	0	0	0	0.24425	4	2105	2099;2105;2111;2118		87.696	26.724	1	327210			25521	2665	20864	20891	28535;28536;28537;28538	28536					0.08902039576855714
KPKKGGGISF	10	Unmodified	_KPKKGGGISF_					0	0	0		ENST00000467099.6_1_17:18003545-18010551:+|nuORF;ENSG00000108591|ENST00000225729|DRG2	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	ENST00000467099.6_1_17:18003545-18010551:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.8054504394531	2	509.805834	1017.59712	-1.068	-0.00054449	0.3064	0.0001562	-0.76164	-0.00038829	509.8059685547136	40.976	1.6583	38.022	37.632	39.291	-2.9541					93	28	6	0	0	0	0.3094	3	1798	1798;1809;1823		79.713	26.361	1	829920			25522	2665	20864	20891	28539;28540;28541	28539					0.08902039576855714
KPKKILLLF	9	Unmodified	_KPKKILLLF_					0	0	0		tr|A0A553SIL7|A0A553SIL7_NIACIBeta-xylanaseOS=NialliacirculansOX=1397GN=CEQ21_15075PE=3SV=1	tr|A0A553SIL7|A0A553SIL7_NIACIBeta-xylanaseOS=NialliacirculansOX=1397GN=CEQ21_15075PE=3SV=1	tr|A0A553SIL7|A0A553SIL7_NIACIBeta-xylanaseOS=NialliacirculansOX=1397GN=CEQ21_15075PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.2731323242188	2	550.38372	1098.75289	-0.41456	-0.00022817	2.8253	0.001555	2.4107	0.0013268	550.3852114909786	51.083	0.21336	51.083	50.907	51.12	0					6	4	2	0	0	0	0.027462	1	3910	3910		0	0	1	50918			25523	33396	20865	20892	28542	28542					0.20746110098275494
KPKKKKVK	8	Unmodified	_KPKKKKVK_					0	0	0			REV__ENST00000523897.5_1_8:62496079-62555960:-|nuORF	REV__ENST00000523897.5_1_8:62496079-62555960:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.2733154296875	2	492.358037	982.701521	0.69773	0.00034353	1.7392	0.00085633	2.437	0.0011999	492.3585022217574	38.326	0.14816	35.4	35.305	35.453	-2.9264					4	2	2	0	0	0	0.028476	1	1483	1483		1.3276	0	1	5633.4	+		25524	23013	20866	20893	28543	28543					0.20947786124224876
KPKKKQVPPG	10	Unmodified	_KPKKKQVPPG_					0	0	0			REV__ENSG00000169340|ENST00000302451|PDILT	REV__ENSG00000169340|ENST00000302451|PDILT	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.8031005859375	2	553.855858	1105.69716	-0.011962	-6.6253E-06	-0.62605	-0.00034674	-0.63801	-0.00035337	553.8554651866408	66.563	0.61037	66.563	66.288	66.898	0					33	14	3	0	0	0	0.026871	1	6142	6142		21.96	0	1	810730	+		25525	21455	20867	20894	28544	28544					0.14854276910659792
KPKLLLLLVN	10	Unmodified	_KPKLLLLLVN_					0	0	0			REV__ENST00000462787.5_1_3:160146675-160146711:+|nuORF	REV__ENST00000462787.5_1_3:160146675-160146711:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.8529052734375	2	575.899734	1149.78492	2.2412	0.0012907	1.5962	0.00091927	3.8375	0.00221	575.8995222469332	84.479	0.45441	84.479	84.261	84.716	0					12	10	2	0	0	0	0.027174	1	8807	8807		14.865	0	1	159190	+		25526	26117	20868	20895	28545	28545					0.21601477781428002
KPKLTGRGW	9	Unmodified	_KPKLTGRGW_					0	0	0		ENST00000382031.5_1_15:43822480-43822663:+|nuORF	ENST00000382031.5_1_15:43822480-43822663:+|nuORF	ENST00000382031.5_1_15:43822480-43822663:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	521.81396484375	2	521.811451	1041.60835	-0.83564	-0.00043605	3.6163	0.001887	2.7806	0.001451	521.8134554363941	67.923	3.082	65.262	64.842	67.924	-2.661					124	61	3	0	0	0	0.44568	1	5397	5397		47.657	1.6851	1	4500900			25527	11173	20869	20896	28546	28546					0.08920861671003877
KPKPAERKV	9	Unmodified	_KPKPAERKV_					0	0	0		nc|ENSG00000188107|Q5T1H1|EYS	nc|ENSG00000188107|Q5T1H1|EYS	nc|ENSG00000188107|Q5T1H1|EYS	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.3063354492188	2	526.832383	1051.65021	2.3316	0.0012284	3.4418	0.0018132	5.7734	0.0030416	526.8339297334799	75.147	0.76189	75.147	74.761	75.523	0					50	18	4	0	0	0	0.027455	1	7493	7493		42.396	16.946	1	2277300			25528	15229	20870	20897	28547	28547					0.12645417359499334
KPKPKIFP	8	Unmodified	_KPKPKIFP_					0	0	0			REV__ENST00000442440.1_1_20:23337427-23338640:-|nuORF	REV__ENST00000442440.1_1_20:23337427-23338640:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	477.80816650390625	2	477.810388	953.606223	-2.2806	-0.0010897	-2.1235	-0.0010146	-4.4041	-0.0021043	477.80923760882655	37.498	1.0346	34.788	34.534	35.568	-2.7097					41	20	3	0	0	0	0.62934	1	1685	1685		57.811	15.337	1	138380	+		25529	25857	20871	20898	28548	28548					0.12756432933178985
KPKPKPEEF	9	Unmodified	_KPKPKPEEF_					0	0	0			REV__ENSG00000152767|ENST00000319562|FARP1	REV__ENSG00000152767|ENST00000319562|FARP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.8322143554688	2	550.310949	1098.60735	-1.084	-0.00059651	-3.0723	-0.0016907	-4.1562	-0.0022872	550.3094634129518	73.372	0.96613	69.976	69.591	70.557	-3.3961					47	19	5	0	0	0	0.027462	1	5654	5654		42.396	15.703	1	94018	+		25530	20303	20872	20899	28549	28549					0.06198602511403806
KPKPNNIFG	9	Unmodified	_KPKPNNIFG_					0	0	0			REV__nc|ENSG00000136827|O14656-2|TOR1A	REV__nc|ENSG00000136827|O14656-2|TOR1A	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7893981933594	2	507.790184	1013.56581	-1.0317	-0.00052386	-3.1581	-0.0016037	-4.1898	-0.0021275	507.78846049471156	32.995	1.0937	30.285	30.075	31.168	-2.7097					38	21	3	0	0	0	0.44294	1	1145	1145		47.916	0.25827	1	88774	+		25531	19408	20873	20900	28550	28550					0.05957466542747625
KPKQISHIE	9	Unmodified	_KPKQISHIE_					0	0	0		ENST00000420058.1_2_7:102628891-102629017:+|nuORF	ENST00000420058.1_2_7:102628891-102629017:+|nuORF	ENST00000420058.1_2_7:102628891-102629017:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3146362304688	2	540.314023	1078.61349	-3.1635	-0.0017093	2.1906	0.0011836	-0.97297	-0.00052571	540.3151490756045	88.289	1.2549	85.686	85.228	86.483	-2.6027					73	24	4	0	0	0	0.1944	2	7537	7537;7552		77.318	10.888	1	512420			25532	11665	20874	20901	28551;28552	28551					0.0773312074295518
KPKQKATSKS	10	Unmodified	_KPKQKATSKS_					0	0	0		ENSG00000124795|ENST00000652689|DEK;nc|ENSG00000124795|P35659-2|DEK;ENST00000512145.1_1_6:18237336-18256602:-|nuORF	ENSG00000124795|ENST00000652689|DEK	ENSG00000124795|ENST00000652689|DEK	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.2606201171875	2	551.83258	1101.65061	-0.67837	-0.00037435	2.6261	0.0014492	1.9478	0.0010748	551.8338918277611	69.419	0.24661	65.938	65.762	66.009	-3.4812					7	4	2	0	0	0	0.027145	1	5179	5179		18.262	0	1	9490			25533	3682	20875	20902	28553	28553					0.10384792288709832
KPKRMLMSTL	10	Unmodified	_KPKRMLMSTL_					0	0	0			REV__ENST00000354675.10_1_6:151673307-151673391:+|nuORF	REV__ENST00000354675.10_1_6:151673307-151673391:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	602.8482666015625	2	602.848861	1203.68317	-0.51063	-0.00030783	0.83117	0.00050107	0.32054	0.00019324	602.8492587951795	33.961	0.52709	33.961	33.824	34.351	0					19	10	3	0	0	0	0.6898	1	1609	1609		26.693	0.62953	1	345300	+		25534	24739	20876	20903	28554	28554					0.08947540095709883
KPKRRYFLKY	10	Unmodified	_KPKRRYFLKY_					0	0	0			REV__nc|ENSG00000196678|A8K979-3|ERI2	REV__nc|ENSG00000196678|A8K979-3|ERI2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	467.6036376953125	3	466.950468	1397.82957	-0.74768	-0.00034913	-4.219	-0.0019701	-4.9667	-0.0023192	466.9487387078919	41.029	1.3001	38.075	37.527	38.827	-2.9541					35	24	2	0	0	0	0.027349	1	1763	1763		10.587	0	1	102570	+		25535	22856	20877	20904	28555	28555					0.14657301647457643
KPKSFKVNVTL	11	Unmodified	_KPKSFKVNVTL_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MSMS	OvCa9_classI_Rep3	3	630.886962890625	2	630.887355	1259.76016	1	0.00063092	-1.1084	-0.00069928	-0.10836	-6.8365E-05	630.8865236906727	69.679	1.8593	66.92	66.617	68.476	-2.7594					106	36	4	0	0	0	0.11714	2	3123	3123;3129		96.034	23.094	1	431790			25536	4651	20878	20905	28556;28557	28556					0.1406679790804901
KPKSFKVNVTL	11	Unmodified	_KPKSFKVNVTL_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	630.887355	1259.76016	-0.59521	-0.00037551	0.51411	0.00032435	-0.081093	-5.1161E-05	630.8875765023208	70.412	1.2605	66.931	66.589	67.849	-3.4812	0.005505	0.0017242	NaN	96.034	74	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	334250			25537	4651	20878	20905							0.1406679790804901
KPKSVSKKL	9	Unmodified	_KPKSVSKKL_					0	0	0		ENSG00000132274|ENST00000379965|TRIM22;nc|ENSG00000132274|Q8IYM9-2|TRIM22	ENSG00000132274|ENST00000379965|TRIM22	ENSG00000132274|ENST00000379965|TRIM22	MULTI-MSMS	OvCa9_classI_Rep2	2	507.83673095703125	2	507.837134	1013.65972	1.5913	0.0008081	-1.9271	-0.00097867	-0.33587	-0.00017057	507.8360989059997	28.421	0.96409	25.712	25.443	26.407	-2.7097					44	20	3	0	0	0	0.2422	2	592	583;592		69.628	25.25	1	67466			25538	4120	20879	20906	28558;28559	28559					0.15343185645053836
KPKSYSSSL	9	Unmodified	_KPKSYSSSL_					0	0	0		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2;ENST00000583822.5_1_17:59949574-59962361:-|nuORF	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.7716979980469	2	498.771657	995.528761	-0.30917	-0.00015421	0.14144	7.0548E-05	-0.16773	-8.3658E-05	498.77154537891454	39.217	1.4916	36.29	35.799	37.291	-2.9264					61	29	3	0	0	0	0.1944	1	1607	1607		77.318	3.0625	1	232330			25539	2658	20880	20907	28560	28560					0.030817502063428037
KPKTDKEL	8	Unmodified	_KPKTDKEL_					0	0	0			REV__nc|ENSG00000149474|Q9H8E8-2|KAT14	REV__nc|ENSG00000149474|Q9H8E8-2|KAT14	MULTI-MSMS	OvCa9_classI_Rep2	2	479.7813415527344	2	479.782025	957.549496	-2.9508	-0.0014157	2.92	0.001401	-0.030781	-1.4768E-05	479.78329356454816	36.627	0.98598	33.918	33.548	34.534	-2.7097					53	19	4	0	0	0	0.60331	1	1575	1575		63.306	0	1	381500	+		25540	20162	20881	20908	28561	28561					0.06902340586009359
KPKTELKVH	9	Unmodified	_KPKTELKVH_					0	0	0			REV__ENSG00000186648|ENST00000342740|CARMIL3	REV__ENSG00000186648|ENST00000342740|CARMIL3	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3320922851562	2	540.332216	1078.64988	0.34656	0.00018726	-4.1131	-0.0022225	-3.7666	-0.0020352	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.61208	1	13688	13688		30.504	2.6214	1	342200	+		25541	22606	20882	20909	28562	28562					0.11369997639667417
KPKTTNIEL	9	Unmodified	_KPKTTNIEL_					0	0	0		nc|ENSG00000117222|Q15291-2|RBBP5;ENSG00000117222|ENST00000264515|RBBP5	nc|ENSG00000117222|Q15291-2|RBBP5	nc|ENSG00000117222|Q15291-2|RBBP5	MULTI-MSMS	OvCa9_classI_Rep2	2	522.3084106445312	2	522.308406	1042.60226	-0.81099	-0.00042359	-0.55121	-0.0002879	-1.3622	-0.00071149	522.3082136275447	53.391	1.7906	50.578	50.231	52.022	-2.8139					73	35	5	0	0	0	0.035142	1	3600	3600		131.03	15.537	1	356130			25542	3244	20883	20910	28563	28563					0.0826629864880033
KPKTTNIEL	9	Unmodified	_KPKTTNIEL_					0	0	0		nc|ENSG00000117222|Q15291-2|RBBP5;ENSG00000117222|ENST00000264515|RBBP5	nc|ENSG00000117222|Q15291-2|RBBP5	nc|ENSG00000117222|Q15291-2|RBBP5	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.3101806640625	2	522.308406	1042.60226	-1.3075	-0.00068294	-0.50604	-0.00026431	-1.8136	-0.00094724	522.3076708198822	53.786	1.7405	50.538	50.161	51.901	-3.2474					72	33	4	0	0	0	0.074342	1	3285	3285		104.75	11.551	1	1360800			25543	3244	20883	20910	28564	28564					0.0826629864880033
KPKVRIKNR	9	Unmodified	_KPKVRIKNR_					0	0	0		tr|A0A553SUE8|A0A553SUE8_NIACINAD-dependentmalicenzymeOS=NialliacirculansOX=1397GN=CEQ21_06865PE=3SV=1	tr|A0A553SUE8|A0A553SUE8_NIACINAD-dependentmalicenzymeOS=NialliacirculansOX=1397GN=CEQ21_06865PE=3SV=1	tr|A0A553SUE8|A0A553SUE8_NIACINAD-dependentmalicenzymeOS=NialliacirculansOX=1397GN=CEQ21_06865PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.248291015625	2	569.880199	1137.74584	-0.04714	-2.6864E-05	-0.032623	-1.8591E-05	-0.079763	-4.5455E-05	569.8800583529152	30.76	0.29788	30.76	30.632	30.93	0					11	5	3	0	0	0	0.027462	1	1196	1196		10.866	0	1	78125			25544	34602	20884	20911	28565	28565					0.1824819027040121
KPKVTMIAW	9	Unmodified	_KPKVTMIAW_					0	0	0		nc|ENSG00000185658|Q9NSI6|BRWD1;BRWD1|p.E1531Dfs*2|1|0.06|ENSG00000185658|chr21:39200379-39200380|-/AA|frameshift_variant;BRWD1|p.V1635Wfs*6|1|0.05|ENSG00000185658|chr21:39199514-39199514|A/-|frameshift_variant;BRWD1|p.Q1709Mfs*18|1|0.17|ENSG00000185658|chr21:39199286-39199292|GCTCTGG/-|frameshift_variant;nc|ENSG00000185658|Q9NSI6-3|BRWD1;ENSG00000185658|ENST00000342449|BRWD1	nc|ENSG00000185658|Q9NSI6|BRWD1	nc|ENSG00000185658|Q9NSI6|BRWD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.294921875	2	537.312438	1072.61032	2.7856	0.0014968	0.63106	0.00033908	3.4167	0.0018358	537.8127658499247	107.77	0.46515	107.77	107.56	108.03	0					15	10	2	0	0	0	0.027462	1	12202	12202		25.574	0	1	304650			25545	15215	20885	20912	28566	28566					0.07692154364576709
KPLCWAVTL	9	Unmodified	_KPLCWAVTL_					0	0	0			REV__nc|ENSG00000188672|P18577-14|RHCE	REV__nc|ENSG00000188672|P18577-14|RHCE	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.7632446289062	2	515.791338	1029.56812	1.9489	0.0010052	-2.2915	-0.0011819	-0.34258	-0.0001767	516.2933961876078	110.59	0.58018	110.59	110.4	110.98	0					17	12	2	0	0	0	0.027461	1	12596	12596		49.442	20.292	1	77522	+		25546	22727	20886	20913	28567	28567					0.054521789561931655
KPLDKIKIS	9	Unmodified	_KPLDKIKIS_					0	0	0			REV__ENSG00000105851|ENST00000496166|PIK3CG	REV__ENSG00000105851|ENST00000496166|PIK3CG	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.2739868164062	2	521.336967	1040.65938	-1.665	-0.00086804	0.76139	0.00039694	-0.90365	-0.00047111	521.3372390801145	72.633	1.2117	69.237	68.96	70.172	-3.3961					58	24	4	0	0	0	0.027462	1	5681	5681		14.137	0	1	349420	+		25547	17761	20887	20914	28568	28568					0.14067765925165077
KPLDKIKIS	9	Unmodified	_KPLDKIKIS_					0	0	0			REV__ENSG00000105851|ENST00000496166|PIK3CG	REV__ENSG00000105851|ENST00000496166|PIK3CG	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.336967	1040.65938	0.85697	0.00044677	-1.1723	-0.00061118	-0.31536	-0.00016441	521.3362163910595	71.444	1.1013	68.936	68.594	69.695	-2.5071	-0.10139	-0.00068483	NaN	9.1829	49	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	318860	+		25548	17761	20887	20914							0.14067765925165077
KPLDNASKL	9	Unmodified	_KPLDNASKL_					0	0	0		ENSG00000116266|ENST00000370008|STXBP3;STXBP3|p.N396Mfs*7|1|0.17|ENSG00000116266|chr1:108796307-108796316|TCAACAAAAA/-|frameshift_variant	ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	MULTI-MSMS	OvCa9_classI_Rep2	2	493.28656005859375	2	493.287474	984.560395	-0.35771	-0.00017645	1.1821	0.0005831	0.82435	0.00040664	493.2874848537779	48.825	0.99188	46.064	45.679	46.671	-2.7603					42	19	3	0	0	0	0.24899	1	3055	3055		68.846	22.874	1	126270			25549	3170	20888	20915	28569	28569					0.06749742960278127
KPLDNASKL	9	Unmodified	_KPLDNASKL_					0	0	0		ENSG00000116266|ENST00000370008|STXBP3;STXBP3|p.N396Mfs*7|1|0.17|ENSG00000116266|chr1:108796307-108796316|TCAACAAAAA/-|frameshift_variant	ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.28741455078125	2	493.287474	984.560395	-1.507	-0.0007434	-0.69428	-0.00034248	-2.2013	-0.0010859	493.2877481274009	49.066	1.1414	45.924	45.417	46.558	-3.1416					67	21	4	0	0	0	0.012992	2	2756	2745;2756		159.28	49.798	1	642040			25550	3170	20888	20915	28570;28571	28571					0.06749742960278127
KPLDNASKL	9	Unmodified	_KPLDNASKL_					0	0	0		ENSG00000116266|ENST00000370008|STXBP3;STXBP3|p.N396Mfs*7|1|0.17|ENSG00000116266|chr1:108796307-108796316|TCAACAAAAA/-|frameshift_variant	ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	MULTI-MATCH	OvCa99_classI_Rep5	1		2	493.287474	984.560395	0.20668	0.00010195	6.7856	0.0033472	6.9923	0.0034492	493.2927962499636	45.978	0.66067	45.978	45.624	46.284	0	-0.010908	0.0054214	NaN	159.28	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154280			25551	3170	20888	20915							0.06749742960278127
KPLDRKLIL	9	Unmodified	_KPLDRKLIL_					0	0	0		ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000460343.5_1_3:53260493-53260973:-|nuORF	ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53260493-53260973:-|nuORF	ENST00000461139.5_1_3:53259774-53265639:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	548.3652954101562	2	548.366059	1094.71756	-0.45292	-0.00024837	-0.036865	-2.0216E-05	-0.48979	-0.00026858	548.3659544093618	67.379	1.6792	64.718	64.298	65.977	-2.661					91	33	4	0	0	0	0.19758	3	5275	5263;5275;5280		76.774	11.653	1	479850			25552	6380;12150	20889	20916	28572;28573;28574	28573					0.17399447570483062
KPLDRKLIL	9	Unmodified	_KPLDRKLIL_					0	0	0		ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000460343.5_1_3:53260493-53260973:-|nuORF	ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53260493-53260973:-|nuORF	ENST00000461139.5_1_3:53259774-53265639:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	548.3661499023438	2	548.366059	1094.71756	0.34637	0.00018994	-0.49439	-0.00027111	-0.14802	-8.1168E-05	548.3655745449837	67.748	1.9986	64.86	64.54	66.539	-2.8873					104	39	4	0	0	0	0.16562	8	2898	2877;2880;2886;2892;2898;2904;2910;2923		82.241	23.459	1	404220			25553	6380;12150	20889	20916	28575;28576;28577;28578;28579;28580;28581;28582	28579					0.17399447570483062
KPLDRKLIL	9	Unmodified	_KPLDRKLIL_					0	0	0		ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000460343.5_1_3:53260493-53260973:-|nuORF	ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53260493-53260973:-|nuORF	ENST00000461139.5_1_3:53259774-53265639:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	548.3667602539062	2	548.366059	1094.71756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.459	1	64.969	64.469	65.469	-3.4902								0	0	0	0.03228	1	5079	5079		87.696	5.3914	1				25554	6380;12150	20889	20916	28583	28583					0.17399447570483062
KPLDRKLIL	9	Unmodified	_KPLDRKLIL_					0	0	0		ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000460343.5_1_3:53260493-53260973:-|nuORF	ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENST00000460343.5_1_3:53260493-53260973:-|nuORF	ENST00000461139.5_1_3:53259774-53265639:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	548.3673706054688	2	548.366059	1094.71756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.564	1	65.074	64.574	65.574	-3.4902								0	0	0	0.07114	1	5092	5092		75.043	12.936	1				25555	6380;12150	20889	20916	28584	28584					0.17399447570483062
KPLEDQWV	8	Unmodified	_KPLEDQWV_					0	0	0		ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.P6706Tfs*18|1|0.25|ENSG00000154358|chr1:228370088-228370089|-/GA|frameshift_variant;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;OBSCN|p.G3435Vfs*25|1|0.11|ENSG00000154358|chr1:228288852-228288853|-/T|frameshift_variant;OBSCN|p.E3436Rfs*24|1|0.11|ENSG00000154358|chr1:228288854-228288855|-/A|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN	ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN	ENSG00000154358|ENST00000680850|OBSCN	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.81842041015625	2	507.766374	1013.5182	-2.0619	-0.001047	-2.7566	-0.0013997	-4.8185	-0.0024467	507.76407555331707	62.597	2.0524	59.853	58.949	61.002	-2.7444					61	22	4	0	0	0	0.028476	1	4740	4740		55.504	0	1	159370			25556	5731;15107	20890	20917	28585	28585					0.01197767551900597
KPLEVTGSR	9	Unmodified	_KPLEVTGSR_					0	0	0			REV__ENSG00000100077|ENST00000324198|GRK3	REV__ENSG00000100077|ENST00000324198|GRK3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.76287841796875	2	493.785099	985.555644	-0.91008	-0.00044938	0.77358	0.00038198	-0.1365	-6.74E-05	493.78520142767246	44.599	1.5326	41.56	40.958	42.491	-3.0385					56	29	3	0	0	0	0.027453	1	2297	2297		30.318	0	1	92174	+		25557	17360	20891	20918	28586	28586					0.06228858817530636
KPLEVTGSR	9	Unmodified	_KPLEVTGSR_					0	0	0			REV__ENSG00000100077|ENST00000324198|GRK3	REV__ENSG00000100077|ENST00000324198|GRK3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	493.785099	985.555644	0.66999	0.00033083	-0.65885	-0.00032533	0.011143	5.5022E-06	493.7845475860473	44.403	1.294	41.693	41.054	42.348	-2.7097	0.066414	-0.00098817	NaN	30.318	37	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23902	+		25558	17360	20891	20918							0.06228858817530636
KPLFAIFLI	9	Unmodified	_KPLFAIFLI_					0	0	0		ENSG00000136939|ENST00000259466|OR1L4;ENSG00000171459|ENST00000304720|OR1L6;nc|ENSG00000171459|Q8NGR2|OR1L6	ENSG00000136939|ENST00000259466|OR1L4	ENSG00000136939|ENST00000259466|OR1L4	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.294677734375	2	531.341521	1060.66849	2.3322	0.0012392	-3.888	-0.0020658	-1.5558	-0.00082665	531.3394596006734	88.941	0.27984	88.941	88.803	89.082	0					9	6	2	0	0	0	0.027462	1	9481	9481		12.959	0	1	226990			25559	4539	20892	20919	28587	28587					0.1405815928148968
KPLFFDIK	8	Unmodified	_KPLFFDIK_					0	0	0		tr|A0A7D6VTD8|A0A7D6VTD8_9CLOTDihydrofolatereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08515PE=4SV=1	tr|A0A7D6VTD8|A0A7D6VTD8_9CLOTDihydrofolatereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08515PE=4SV=1	tr|A0A7D6VTD8|A0A7D6VTD8_9CLOTDihydrofolatereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08515PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	504.2967834472656	2	504.299853	1006.58515	-0.69871	-0.00035236	-3.2624	-0.0016452	-3.9611	-0.0019976	504.2979938045065	40.04	1.1397	37.33	37.052	38.192	-2.7097					47	22	3	0	0	0	0.60331	1	1998	1998		63.306	1.1989	1	159290			25560	35108	20893	20920	28588	28588					0.0821242283365109
KPLGALPDQ	9	Unmodified	_KPLGALPDQ_					0	0	0			REV__ENSG00000198597|ENST00000355537|ZNF536	REV__ENSG00000198597|ENST00000355537|ZNF536	MULTI-SECPEP	OvCa9_classI_Rep4_	4	469.8059387207031	2	469.768917	937.523281	0.97793	0.0004594	-1.478	-0.0006943	-0.50004	-0.0002349	469.7683965084879	89.987	0.75745	87.412	87.198	87.956	-2.575					21	14	2	0	0	0	0.027462	1	7796	7796		34.173	5.023	1	54057	+		25561	23033	20894	20921	28589	28589					0.05202071414510101
KPLGIKTAL	9	Unmodified	_KPLGIKTAL_					0	0	0		RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.T5031Rfs*29|1|0.06|ENSG00000173821|chr17:80389261-80389262|-/TCGG|frameshift_variant;RNF213|p.G5057Vfs*8|1|0.18|ENSG00000173821|chr17:80389340-80389340|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	470.81207275390625	2	470.813128	939.611703	0.75687	0.00035634	-1.2842	-0.00060461	-0.52732	-0.00024827	470.8125039454618	66.089	3.02	63.393	62.922	65.942	-2.6958					136	60	4	0	0	0	0.0072874	13	5103	5088;5092;5097;5103;5109;5115;5121;5127;5133;5140;5147;5154;5160		195.06	102.51	1	2182700			25562	7416	20895	20922	28590;28591;28592;28593;28594;28595;28596;28597;28598;28599;28600;28601;28602	28593					0.13948111724982937
KPLGIKTAL	9	Unmodified	_KPLGIKTAL_					0	0	0		RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.T5031Rfs*29|1|0.06|ENSG00000173821|chr17:80389261-80389262|-/TCGG|frameshift_variant;RNF213|p.G5057Vfs*8|1|0.18|ENSG00000173821|chr17:80389340-80389340|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.8143310546875	2	470.813128	939.611703	0.97487	0.00045898	-1.43	-0.00067328	-0.45516	-0.0002143	470.81240361499255	66.908	2.6538	63.418	63	65.654	-3.4902					135	53	5	0	0	0	0.0072874	8	4915	4871;4879;4891;4903;4915;4929;4941;4954		190.26	99.485	1	2451900			25563	7416	20895	20922	28603;28604;28605;28606;28607;28608;28609;28610	28607					0.13948111724982937
KPLGIKTAL	9	Unmodified	_KPLGIKTAL_					0	0	0		RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.T5031Rfs*29|1|0.06|ENSG00000173821|chr17:80389261-80389262|-/TCGG|frameshift_variant;RNF213|p.G5057Vfs*8|1|0.18|ENSG00000173821|chr17:80389340-80389340|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	470.813128	939.611703	1.4388	0.0006774	-1.138	-0.00053576	0.30083	0.00014164	470.8124117891034	66.524	1.4651	63.578	63.265	64.73	-2.9459	0.11497	0.00017505	NaN	190.26	36	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22193			25564	7416	20895	20922							0.13948111724982937
KPLKHKGIL	9	Unmodified	_KPLKHKGIL_					0	0	0		tr|A0A7D6ZNI0|A0A7D6ZNI0_9CLOTDNApolymeraseIIIsubunitdeltaOS=ClostridiumintestinaleOX=36845GN=holAPE=4SV=1	tr|A0A7D6ZNI0|A0A7D6ZNI0_9CLOTDNApolymeraseIIIsubunitdeltaOS=ClostridiumintestinaleOX=36845GN=holAPE=4SV=1	tr|A0A7D6ZNI0|A0A7D6ZNI0_9CLOTDNApolymeraseIIIsubunitdeltaOS=ClostridiumintestinaleOX=36845GN=holAPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.762451171875	2	517.347669	1032.68079	-0.27385	-0.00014167	2.817	0.0014574	2.5432	0.0013157	517.3490935068605	101.61	0.51147	101.61	101.44	101.95	0					15	11	2	0	0	0	0.027462	1	11299	11299		10.866	0	1	115480			25565	35680	20896	20923	28611	28611					0.1657519574455364
KPLKILTPL	9	Unmodified	_KPLKILTPL_					0	0	0		MYBPC1|p.Q927Pfs*4|1|0.04|ENSG00000196091|chr12:101673611-101673612|-/A|frameshift_variant;nc|ENSG00000196091|Q00872-5|MYBPC1;nc|ENSG00000196091|Q00872-3|MYBPC1;nc|ENSG00000196091|Q00872-9|MYBPC1;nc|ENSG00000196091|Q00872-8|MYBPC1;nc|ENSG00000196091|Q00872-7|MYBPC1;nc|ENSG00000196091|Q00872|MYBPC1;nc|ENSG00000196091|Q00872-10|MYBPC1;nc|ENSG00000196091|Q00872-2|MYBPC1;ENSG00000196091|ENST00000361466|MYBPC1;nc|ENSG00000196091|Q00872-6|MYBPC1	MYBPC1|p.Q927Pfs*4|1|0.04|ENSG00000196091|chr12:101673611-101673612|-/A|frameshift_variant	MYBPC1|p.Q927Pfs*4|1|0.04|ENSG00000196091|chr12:101673611-101673612|-/A|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.8174743652344	2	511.852253	1021.68995	1.2197	0.0006243	0.43867	0.00022453	1.6584	0.00084884	511.8510690583775	145.47	0.17006	145.47	145.36	145.53	0					5	3	2	0	0	0	0.027462	1	17017	17017		23.042	9.2672	1	8466.6			25566	8561	20897	20924	28612	28612					0.1799754431023075
KPLKQKNMN	9	Unmodified	_KPLKQKNMN_					0	0	0		ENSG00000175267|ENST00000389398|VWA3A;VWA3A|p.L778Afs*11|2|0.13|ENSG00000175267|chr16:22140185-22140186|-/C|frameshift_variant;VWA3A|p.E437Gfs*20|1|0.11|ENSG00000175267|chr16:22121568-22121569|-/AG|frameshift_variant	ENSG00000175267|ENST00000389398|VWA3A	ENSG00000175267|ENST00000389398|VWA3A	MULTI-SECPEP	OvCa9_classI_Rep2	2	550.3363037109375	2	550.815876	1099.6172	0.78518	0.00043249	-1.9872	-0.0010946	-1.202	-0.0006621	550.815149169163	66.552	1.7833	63.856	63.517	65.3	-2.6958					64	35	3	0	0	0	0.027462	1	5184	5184		27.882	0	1	348540			25567	7531	20898	20925	28613	28613					0.07137467245138396
KPLKSKGII	9	Unmodified	_KPLKSKGII_					0	0	0			REV__nc|ENSG00000140993|Q6NT04-2|TIGD7	REV__nc|ENSG00000140993|Q6NT04-2|TIGD7	MULTI-MSMS	OvCa9_classI_Rep2	2	492.3343200683594	2	492.334227	982.653902	0.58016	0.00028563	-1.0688	-0.0005262	-0.48863	-0.00024057	492.33353393369697	45.15	1.1509	42.441	42.049	43.2	-2.7097					49	22	3	0	0	0	0.59259	1	2623	2623		32.812	0	1	156000	+		25568	19713	20899	20926	28614	28614					0.1618808713337785
KPLKTDRE	8	Unmodified	_KPLKTDRE_					0	0	0			REV__ENSG00000164715|ENST00000297293|LMTK2	REV__ENSG00000164715|ENST00000297293|LMTK2	MULTI-MSMS	OvCa9_classI_Rep2	2	493.7853698730469	2	493.785099	985.555644	1.4093	0.00069587	-1.7511	-0.00086466	-0.34184	-0.00016879	493.78415838053036	41.942	1.876	39.232	38.832	40.708	-2.7097					88	37	4	0	0	0	0.65062	2	2209	2209;2255		53.351	3.9099	1	1028200	+		25569	21014	20900	20927	28615;28616	28615					0.062288588175078985
KPLLLAGRT	9	Unmodified	_KPLLLAGRT_					0	0	0		ENST00000357749.6_1_X:85218995-85233876:-|nuORF	ENST00000357749.6_1_X:85218995-85233876:-|nuORF	ENST00000357749.6_1_X:85218995-85233876:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	484.8156433105469	2	484.816202	967.617851	-0.92839	-0.0004501	0.72443	0.00035122	-0.20396	-9.8884E-05	484.81643297200304	55.856	1.9338	53.052	52.482	54.415	-2.804					94	38	4	0	0	0	0.37135	1	3916	3916		54.776	1.4249	1	432030			25570	10723	20901	20928	28617	28617					0.13274629956515582
KPLLNKVFE	9	Unmodified	_KPLLNKVFE_					0	0	0			REV__ENSG00000140396|ENST00000452400|NCOA2;REV__nc|ENSG00000084676|Q15788-3|NCOA1	REV__nc|ENSG00000084676|Q15788-3|NCOA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.2743530273438	2	544.329142	1086.64373	-0.1108	-6.0313E-05	0.309	0.0001682	0.1982	0.00010788	544.3290567077739	46.915	0.31329	46.915	46.762	47.076	0					11	6	2	0	0	0	0.027462	1	3347	3347		11.511	0	1	90628	+		25571	17125;19667	20902	20929	28618	28618					0.10387479408132094
KPLLRALL	8	Unmodified	_KPLLRALL_					0	0	0		ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENST00000522359.2_1_11:61630757-61632750:+|nuORF	ENSG00000134824|ENST00000278840|FADS2	ENSG00000134824|ENST00000278840|FADS2	MULTI-MSMS	OvCa9_classI_Rep2	2	462.3238220214844	2	462.323663	922.632772	0.31728	0.00014669	-0.44559	-0.00020601	-0.12831	-5.9321E-05	462.32333321447794	81.386	1.7539	79.737	79.415	81.169	-1.6485					91	33	4	0	0	0	0.73938	2	6912	6912;6937		31.955	0	1	679600			25572	4334	20903	20930	28619;28620	28619					0.16836121824496786
KPLLRALL	8	Unmodified	_KPLLRALL_					0	0	0		ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENST00000522359.2_1_11:61630757-61632750:+|nuORF	ENSG00000134824|ENST00000278840|FADS2	ENSG00000134824|ENST00000278840|FADS2	MULTI-MSMS	OvCa9_classI_Rep3	3	462.3240661621094	2	462.323663	922.632772	-1.0288	-0.00047566	0.64098	0.00029634	-0.38786	-0.00017932	462.32384863852093	82.511	2.5875	80.215	79.684	82.272	-2.2963					118	53	4	0	0	0	0.74229	1	4676	4676		30.504	0	1	920910			25573	4334	20903	20930	28621	28621					0.16836121824496786
KPLLRALL	8	Unmodified	_KPLLRALL_					0	0	0		ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENST00000522359.2_1_11:61630757-61632750:+|nuORF	ENSG00000134824|ENST00000278840|FADS2	ENSG00000134824|ENST00000278840|FADS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.3248291015625	2	462.323663	922.632772	-0.86535	-0.00040007	0.8667	0.00040069	0.0013422	6.2052E-07	462.3239230534907	82.848	1.8369	80.165	79.782	81.619	-2.683					88	37	4	0	0	0	0.7224	1	6856	6856		38.806	0	1	783480			25574	4334	20903	20930	28622	28622					0.16836121824496786
KPLLRALL	8	Unmodified	_KPLLRALL_					0	0	0		ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;ENST00000522359.2_1_11:61630757-61632750:+|nuORF	ENSG00000134824|ENST00000278840|FADS2	ENSG00000134824|ENST00000278840|FADS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.3247375488281	2	462.323663	922.632772	-1.2966	-0.00059946	1.1557	0.00053433	-0.14087	-6.5129E-05	462.3240471065514	92.205	1.7143	89.663	89.262	90.976	-2.5425					75	33	3	0	0	0	0.73938	1	8006	8006		31.955	5.1588	1	358670			25575	4334	20903	20930	28623	28623					0.16836121824496786
KPLLRLLW	8	Unmodified	_KPLLRLLW_					0	0	0		ENST00000577506.5_1_17:62479067-62487080:-|nuORF	ENST00000577506.5_1_17:62479067-62487080:-|nuORF	ENST00000577506.5_1_17:62479067-62487080:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3119506835938	2	519.844762	1037.67497	-0.28448	-0.00014788	-3.8752	-0.0020145	-4.1597	-0.0021624	519.8426755570052	47.367	1.0087	44.295	44.065	45.074	-3.0724					25	19	2	0	0	0	0.028476	1	2621	2621		3.9852	0	1	33018			25576	13958	20904	20931	28624	28624					0.15764097232886343
KPLLRLLW	8	Unmodified	_KPLLRLLW_					0	0	0		ENST00000577506.5_1_17:62479067-62487080:-|nuORF	ENST00000577506.5_1_17:62479067-62487080:-|nuORF	ENST00000577506.5_1_17:62479067-62487080:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	519.844762	1037.67497	-0.19994	-0.00010394	-4.0247	-0.0020922	-4.2246	-0.0021962	519.8423993642024	46.845	0.94211	44.135	43.794	44.737	-2.7097	-0.079837	-5.9345E-05	NaN	3.9852	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18905			25577	13958	20904	20931							0.15764097232886343
KPLNSEIREL	10	Unmodified	_KPLNSEIREL_					0	0	0		ENSG00000150054|ENST00000683449|MPP7	ENSG00000150054|ENST00000683449|MPP7	ENSG00000150054|ENST00000683449|MPP7	MULTI-MSMS	OvCa99_classI_Rep5	1	400.2294921875	3	400.231189	1197.67174	0.83897	0.00033578	-2.8393	-0.0011364	-2.0003	-0.00080058	400.2299870985861	40.085	1.3842	40.085	39.63	41.014	0					53	30	3	0	0	0	0.48398	1	2406	2406		56.434	0	1	1465000			25578	5499	20905	20932	28625	28625					0.08080757597554111
KPLNSEIREL	10	Unmodified	_KPLNSEIREL_					0	0	0		ENSG00000150054|ENST00000683449|MPP7	ENSG00000150054|ENST00000683449|MPP7	ENSG00000150054|ENST00000683449|MPP7	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	400.231189	1197.67174	1.1229	0.00044941	0.14167	5.6702E-05	1.2646	0.00050612	400.2309707901553	43.079	0.68282	40.072	39.853	40.536	-3.0074	-0.006329	0.0027212	NaN	56.434	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38917			25579	5499	20905	20932							0.08080757597554111
KPLPADPQ	8	Unmodified	_KPLPADPQ_					0	0	0		nc|ENSG00000143537|Q13444-2|ADAM15;nc|ENSG00000143537|Q13444-12|ADAM15;nc|ENSG00000143537|Q13444-5|ADAM15;nc|ENSG00000143537|Q13444-4|ADAM15;ENST00000527418.5_1_1:155025082-155034975:+|nuORF;nc|ENSG00000143537|Q13444-3|ADAM15;ENSG00000143537|ENST00000356955|ADAM15;nc|ENSG00000143537|Q13444-11|ADAM15;ENST00000464824.2_1_1:155034702-155034975:+|nuORF	nc|ENSG00000143537|Q13444-2|ADAM15	nc|ENSG00000143537|Q13444-2|ADAM15	MULTI-SECPEP	OvCa99_classI_Rep5	1	433.74896240234375	2	433.242535	864.470518	0.3359	0.00014553	-0.26648	-0.00011545	0.069421	3.0076E-05	433.2423618539724	73.064	1.1083	73.064	72.684	73.792	0					42	27	3	0	0	0	0.028476	1	7199	7199		55.504	11.387	1	601910			25580	5068	20906	20933	28626	28626					0.032861133517030794
KPLPKPLC	8	Unmodified	_KPLPKPLC_					0	0	0			REV__nc|ENSG00000188672|P18577-14|RHCE	REV__nc|ENSG00000188672|P18577-14|RHCE	MULTI-MSMS	OvCa9_classI_Rep2	2	448.2772521972656	2	448.275324	894.536095	5.9919	0.002686	-1.6893	-0.00075728	4.3025	0.0019287	448.2744393122276	25.364	1.3734	22.654	22.379	23.752	-2.7097					68	30	4	0	0	0	0.75426	1	237	237		18.324	1.6194	1	341610	+		25581	22727	20907	20934	28627	28627					0.08460811273050695
KPLPLKTAL	9	Unmodified	_KPLPLKTAL_					0	0	0		nc|ENSG00000170802|P32314-2|FOXN2;ENSG00000170802|ENST00000340553|FOXN2	nc|ENSG00000170802|P32314-2|FOXN2	nc|ENSG00000170802|P32314-2|FOXN2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.7566223144531	2	490.828778	979.643003	-0.62657	-0.00030754	0.28762	0.00014117	-0.33895	-0.00016637	490.82879154532634	71.306	1.2674	67.85	67.486	68.753	-3.4563					52	25	3	0	0	0	0.027432	1	5441	5441		49.536	10.73	1	190080			25582	7137	20908	20935	28628	28628					0.1523668475906561
KPLPLKTAL	9	Unmodified	_KPLPLKTAL_					0	0	0		nc|ENSG00000170802|P32314-2|FOXN2;ENSG00000170802|ENST00000340553|FOXN2	nc|ENSG00000170802|P32314-2|FOXN2	nc|ENSG00000170802|P32314-2|FOXN2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	490.828778	979.643003	0.14033	6.8876E-05	-0.092825	-4.5561E-05	0.047502	2.3315E-05	490.82860567313884	70.463	1.3602	67.743	67.354	68.714	-2.7196	-0.017956	0.0002438	NaN	49.536	45	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96314			25583	7137	20908	20935							0.1523668475906561
KPLQAELQS	9	Unmodified	_KPLQAELQS_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	MULTI-MSMS	OvCa9_classI_Rep2	2	507.28302001953125	2	507.284931	1012.55531	0.0066851	3.3913E-06	-2.7534	-0.0013968	-2.7467	-0.0013934	507.283412188162	31.081	1.5294	28.371	28.15	29.679	-2.7097					66	30	3	0	0	0	0.63422	1	947	947		27.882	0	1	500220	+		25584	29026	20909	20936	28629	28629					0.04953439097653245
KPLRERLWP	9	Unmodified	_KPLRERLWP_					0	0	0		ENST00000444757.5_3_6:33168321-33168510:+|nuORF	ENST00000444757.5_3_6:33168321-33168510:+|nuORF	ENST00000444757.5_3_6:33168321-33168510:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	597.857421875	2	597.858932	1193.70331	-3.1766	-0.0018991	-1.0809	-0.0006462	-4.2574	-0.0025453	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.67509	1	15245	15245		23.042	2.0956	1	436470			25585	11962	20910	20937	28630	28630					0.11420795142180395
KPLRGESR	8	Unmodified	_KPLRGESR_					0	0	0		ENST00000221859.8_1_19:36605839-36605938:-|nuORF	ENST00000221859.8_1_19:36605839-36605938:-|nuORF	ENST00000221859.8_1_19:36605839-36605938:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.21905517578125	2	471.777608	941.540663	-0.14532	-6.8559E-05	0.21369	0.00010081	0.068368	3.2255E-05	471.7775850481607	47.568	0.34461	47.568	47.336	47.681	0					18	7	3	0	0	0	0.028476	1	3420	3420		44.117	13.613	1	342810			25586	9695	20911	20938	28631	28631					0.06755411740186901
KPLRKKPE	8	Unmodified	_KPLRKKPE_					0	0	0		tr|A0A553SKJ9|A0A553SKJ9_NIACIStageIIsporulationproteinPOS=NialliacirculansOX=1397GN=CEQ21_18915PE=4SV=1	tr|A0A553SKJ9|A0A553SKJ9_NIACIStageIIsporulationproteinPOS=NialliacirculansOX=1397GN=CEQ21_18915PE=4SV=1	tr|A0A553SKJ9|A0A553SKJ9_NIACIStageIIsporulationproteinPOS=NialliacirculansOX=1397GN=CEQ21_18915PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	499.2879333496094	2	498.321651	994.62875	0.16099	8.0225E-05	-0.47103	-0.00023472	-0.31004	-0.0001545	498.3211224495711	79.733	0.80694	78.037	77.662	78.469	-1.6951					22	15	2	0	0	0	0.028476	1	6690	6690		23.042	0	1	15975			25587	33623	20912	20939	28632	28632					0.1312203233079572
KPLRLPLQD	9	Unmodified	_KPLRLPLQD_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENSG00000101210|ENST00000217182|EEF1A2	nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000101210|ENST00000217182|EEF1A2	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3291015625	2	540.332216	1078.64988	-1.5762	-0.00085169	-2.2598	-0.001221	-3.836	-0.0020727	540.3309156564876	138.68	4.2384	138.45	137.13	141.37	-0.22697					227	86	3	0	0	0	0.64427	1	14087	14087		26.693	3.6504	1	66382			25588	5844;2151	20913	20940	28633	28633					0.11369997639667417
KPLRSHITL	9	Unmodified	_KPLRSHITL_					0	0	0		ENSG00000165164|ENST00000378653|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.7877197265625	2	532.832383	1063.65021	-2.5633	-0.0013658	4.3912	0.0023397	1.8278	0.00097393	533.3388937452726	103.96	0.67883	103.96	103.69	104.36	0					24	15	3	0	0	0	0.027441	1	11615	11615		40.778	3.6191	1	154490			25589	6529	20914	20941	28634	28634					0.1209341735950602
KPLRTINL	8	Unmodified	_KPLRTINL_					0	0	0		nc|ENSG00000215568|Q2WGN9|GAB4;NARS2-GAB4|1|fusion	nc|ENSG00000215568|Q2WGN9|GAB4	nc|ENSG00000215568|Q2WGN9|GAB4	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.80938720703125	2	477.808377	953.6022	1.0264	0.00049042	-1.5216	-0.00072704	-0.49522	-0.00023662	477.80742981999833	37.517	1.441	34.624	34.343	35.784	-2.8925					80	28	4	0	0	0	0.61436	1	1378	1378		60.972	0	1	427420			25590	15316	20915	20942	28635	28635					0.12354343439449167
KPLRTVPVAL	10	Unmodified	_KPLRTVPVAL_					0	0	0		ENST00000308278.12_1_17:645091-645304:+|nuORF;ENST00000570892.1_1_17:645091-645854:+|nuORF	ENST00000308278.12_1_17:645091-645304:+|nuORF	ENST00000308278.12_1_17:645091-645304:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	548.3174438476562	2	547.358234	1092.70191	-0.912	-0.00049919	0.3518	0.00019256	-0.5602	-0.00030663	547.3581425986729	74.723	0.29712	72.312	72.142	72.439	-2.4106					10	5	2	0	0	0	0.027088	1	3722	3722		19.997	6.5427	1	8277.8			25591	10265	20916	20943	28636	28636					0.15927161053400596
KPLSISAPR	9	Unmodified	_KPLSISAPR_					0	0	0		ENST00000460934.1_1_1:205627129-205627225:-|nuORF	ENST00000460934.1_1_1:205627129-205627225:-|nuORF	ENST00000460934.1_1_1:205627129-205627225:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	484.7986755371094	2	484.798009	967.581465	2.8519	0.0013826	-2.9026	-0.0014072	-0.050769	-2.4613E-05	484.7963669439601	26.614	0.46519	23.905	23.706	24.171	-2.7097					22	13	2	0	0	0	0.70914	1	391	391		14.865	1.4108	1	19778			25592	12163	20917	20944	28637	28637					0.09637753059791976
KPLSLRDAS	9	Unmodified	_KPLSLRDAS_					0	0	0		ENST00000296824.3_1_5:205851-205899:-|nuORF	ENST00000296824.3_1_5:205851-205899:-|nuORF	ENST00000296824.3_1_5:205851-205899:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	493.7848815917969	2	493.785099	985.555644	1.4093	0.00069587	-1.7511	-0.00086466	-0.34184	-0.00016879	493.78415838053036	41.942	1.876	39.232	38.832	40.708	-2.7097					88	37	4	0	0	0	0.24951	1	2237	2237		68.787	0	1	1028200			25593	10147	20918	20945	28638	28638					0.062288588175078985
KPLSRLSTV	9	Unmodified	_KPLSRLSTV_					0	0	0			REV__ENSG00000187833|ENST00000409561|C2orf78	REV__ENSG00000187833|ENST00000409561|C2orf78	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.8118896484375	2	500.811116	999.60768	-0.23852	-0.00011945	-0.2188	-0.00010958	-0.45732	-0.00022903	500.810889421349	59.423	1.378	56.031	55.755	57.133	-3.392					74	27	4	0	0	0	0.1944	1	3969	3969		77.318	0	1	926570	+		25594	22670	20919	20946	28639	28639					0.10786022231275183
KPLSRSAEL	9	Unmodified	_KPLSRSAEL_					0	0	0		MTSS1L-DGCR8|1|fusion;ENST00000498171.5_1_22:20077477-20097628:+|nuORF;ENST00000495826.5_1_22:20074657-20094820:+|nuORF;MTSS1L-DGCR8|2|fusion;nc|ENSG00000128191|Q8WYQ5-3|DGCR8;ENSG00000128191|ENST00000351989|DGCR8	MTSS1L-DGCR8|1|fusion	MTSS1L-DGCR8|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.8118896484375	2	500.792924	999.571294	-0.18191	-9.1099E-05	-0.25663	-0.00012852	-0.43854	-0.00021962	500.792730798532	59.534	0.83418	56.142	55.854	56.689	-3.392					38	16	3	0	0	0	0.027411	1	3969	3969		64.207	5.4253	1	147020			25595	3866	20920	20947	28640	28640					0.07149145334562945
KPLSRVTSL	9	Unmodified	_KPLSRVTSL_					0	0	0		ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-3|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3	ENSG00000163947|ENST00000296315|ARHGEF3	ENSG00000163947|ENST00000296315|ARHGEF3	MULTI-MSMS	OvCa9_classI_Rep2	2	500.8110656738281	2	500.811116	999.60768	-0.87671	-0.00043907	0.90088	0.00045117	0.024171	1.2105E-05	500.81145799775607	58.682	1.9963	55.902	55.285	57.281	-2.7801					105	38	4	0	0	0	0.2422	6	4253	4229;4235;4241;4248;4253;4259		69.628	19.157	1	505510			25596	6385	20921	20948	28641;28642;28643;28644;28645;28646	28645					0.10786022231286552
KPLSRVTSL	9	Unmodified	_KPLSRVTSL_					0	0	0		ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-3|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3	ENSG00000163947|ENST00000296315|ARHGEF3	ENSG00000163947|ENST00000296315|ARHGEF3	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.8130187988281	2	500.811116	999.60768	-0.23852	-0.00011945	-0.2188	-0.00010958	-0.45732	-0.00022903	500.810889421349	59.423	1.378	56.031	55.755	57.133	-3.392					74	27	4	0	0	0	0.094791	1	3981	3981		98.582	31.088	1	926570			25597	6385	20921	20948	28647	28647					0.10786022231286552
KPLSTSGGLV	10	Unmodified	_KPLSTSGGLV_					0	0	0		SH2D5|p.S174T|1|0.12|ENSG00000189410|chr1:20724505-20724505|C/G|missense_variant	SH2D5|p.S174T|1|0.12|ENSG00000189410|chr1:20724505-20724505|C/G|missense_variant	SH2D5|p.S174T|1|0.12|ENSG00000189410|chr1:20724505-20724505|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.7821044921875	2	479.782025	957.549496	0.99322	0.00047653	-1.0427	-0.00050026	-0.049469	-2.3734E-05	479.78127825386844	36.379	1.6962	33.53	33.238	34.935	-2.849					94	33	5	0	0	0	0.56767	1	1250	1250		45.952	1.4209	1	447690			25598	32817	20922	20949	28648	28648					0.06902340586020728
KPLSTSGGLV	10	Unmodified	_KPLSTSGGLV_					0	0	0		SH2D5|p.S174T|1|0.12|ENSG00000189410|chr1:20724505-20724505|C/G|missense_variant	SH2D5|p.S174T|1|0.12|ENSG00000189410|chr1:20724505-20724505|C/G|missense_variant	SH2D5|p.S174T|1|0.12|ENSG00000189410|chr1:20724505-20724505|C/G|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	479.782025	957.549496	-2.6252	-0.0012595	4.2121	0.0020209	1.5868	0.00076134	479.78390370395334	35.911	0.847	33.202	32.75	33.597	-2.7097	-0.16434	0.0028815	NaN	45.952	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34287			25599	32817	20922	20949							0.06902340586020728
KPLTLIIDEM	10	Unmodified	_KPLTLIIDEM_					0	0	0			REV__DDX6|p.T310Yfs*16|1|0.04|ENSG00000110367|chr11:118758840-118758841|-/GACTTAAACTCTTTGCCACACTGTAC|frameshift_variant	REV__DDX6|p.T310Yfs*16|1|0.04|ENSG00000110367|chr11:118758840-118758841|-/GACTTAAACTCTTTGCCACACTGTAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.8323974609375	2	586.8334	1171.65225	-1.3959	-0.00081919	2.3695	0.0013905	0.97355	0.00057131	586.8348196312893	145.67	2.8806	144.23	143.04	145.92	-1.4357					88	55	2	0	0	0	0.78463	1	14323	14323		20.947	0	1	38613	+		25600	16282	20923	20950	28649	28649					0.07328665262434697
KPLVKIRD	8	Unmodified	_KPLVKIRD_					0	0	0		tr|A0A7D6VPE2|A0A7D6VPE2_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22725PE=3SV=1	tr|A0A7D6VPE2|A0A7D6VPE2_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22725PE=3SV=1	tr|A0A7D6VPE2|A0A7D6VPE2_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22725PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	484.8161926269531	2	484.816202	967.617851	-0.92839	-0.0004501	0.72443	0.00035122	-0.20396	-9.8884E-05	484.81643297200304	55.856	1.9338	53.052	52.482	54.415	-2.804					94	38	4	0	0	0	0.66057	1	3898	3898		51.335	0	1	432030			25601	34764	20924	20951	28650	28650					0.13274629956504214
KPLVLWSL	8	Unmodified	_KPLVLWSL_					0	0	0		ENSG00000170522|ENST00000302274|ELOVL6	ENSG00000170522|ENST00000302274|ELOVL6	ENSG00000170522|ENST00000302274|ELOVL6	MULTI-MSMS	OvCa9_classI_Rep2	2	478.2995300292969	2	478.302396	954.590239	-1.3958	-0.0006676	-3.4624	-0.0016561	-4.8582	-0.0023237	478.300797234432	52.175	1.9776	49.362	48.552	50.53	-2.8129					86	39	4	0	0	0	0.64026	1	3455	3455		55.504	4.1688	1	346960			25602	7113	20925	20952	28651	28651					0.11112726696285335
KPLVPVVW	8	Unmodified	_KPLVPVVW_					0	0	0			REV__ENSG00000124486|ENST00000378308|USP9X;REV__nc|ENSG00000114374|O00507-2|USP9Y	REV__ENSG00000124486|ENST00000378308|USP9X	MULTI-SECPEP	OvCa9_classI_Rep3	3	469.27734375	2	469.297114	936.579674	-0.014612	-6.8576E-06	2.5253	0.0011851	2.5106	0.0011782	469.2985224177406	98.421	0.25782	96.661	96.52	96.778	-1.7595					6	4	2	0	0	0	0.028476	1	6574	6574		28.254	11.549	1	8940.7	+		25603	18688;18184	20926	20953	28652	28652					0.10884744041845806
KPLYHYFIK	9	Unmodified	_KPLYHYFIK_					0	0	0		ENST00000432615.5_1_7:158461124-158468267:-|nuORF	ENST00000432615.5_1_7:158461124-158468267:-|nuORF	ENST00000432615.5_1_7:158461124-158468267:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	605.822021484375	2	604.844959	1207.67537	0.19698	0.00011914	-1.1721	-0.00070896	-0.97515	-0.00058982	604.8442310658759	46.786	0.61953	46.786	46.501	47.121	0					18	13	2	0	0	0	0.027462	1	3313	3313		16.473	7.7795	1	200320			25604	11813	20927	20954	28653	28653					0.07983472162072758
KPLYKRLE	8	Unmodified	_KPLYKRLE_					0	0	0			REV__ENSG00000151151|ENST00000373935|IPMK	REV__ENSG00000151151|ENST00000373935|IPMK	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.34326171875	2	523.821484	1045.62842	0.95535	0.00050043	0.95315	0.00049928	1.9085	0.00099971	523.821972452323	93.406	0.41026	93.406	93.221	93.632	0					15	9	2	0	0	0	0.028476	1	10152	10152		47.916	0.25827	1	653250	+		25605	20220	20928	20955	28654	28654					0.10742612610920332
KPMLLKIF	8	Unmodified	_KPMLLKIF_					0	0	0			REV__ENST00000521389.5_1_5:179382493-179382619:-|nuORF	REV__ENST00000521389.5_1_5:179382493-179382619:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.7735900878906	2	495.314449	988.614345	2.3087	0.0011435	4.2907	0.0021252	6.5994	0.0032688	495.3164315928267	86.241	0.39553	86.241	85.994	86.389	0					16	9	2	0	0	0	0.028476	1	9095	9095		13.775	0	1	353620	+		25606	27068	20929	20956	28655	28655					0.11958243858293827
KPMNPLPRS	9	Unmodified	_KPMNPLPRS_					0	0	0			REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.858642578125	2	520.289494	1038.56443	2.1159	0.0011009	-0.92778	-0.00048271	1.1881	0.00061817	520.2887856312011	86.381	0.60846	86.381	86.153	86.761	0					24	14	2	0	0	0	0.027403	1	9089	9089		79.713	18.741	1	438880	+		25607	17348	20930	20957	28656	28656					0.046695091823494295
KPMSSKPKP	9	Unmodified	_KPMSSKPKP_					0	0	0		ENST00000560115.5_1_15:81584907-81587720:+|nuORF;IL16|p.R889Efs*54|1|0.09|ENSG00000172349|chr15:81299987-81299987|G/-|frameshift_variant;nc|ENSG00000172349|Q14005-2|IL16;ENSG00000172349|ENST00000683961|IL16	ENST00000560115.5_1_15:81584907-81587720:+|nuORF	ENST00000560115.5_1_15:81584907-81587720:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.8090515136719	2	500.28642	998.558287	-0.64231	-0.00032134	-2.4668	-0.0012341	-3.1091	-0.0015554	500.2850960034278	74.397	1.8176	71.987	71.151	72.969	-2.4106					59	36	3	0	0	0	0.027455	1	3799	3799		26.693	6.6961	1	154450			25608	7292	20931	20958	28657	28657					0.058949909508328346
KPMVEVART	9	Unmodified	_KPMVEVART_					0	0	0			REV__CON__Q3SX14	REV__CON__Q3SX14	MULTI-MSMS	OvCa9_classI_Rep3	3	515.7925415039062	2	515.789327	1029.5641	1.8377	0.00094786	4.0485	0.0020882	5.8862	0.003036	515.7912976606297	121.49	1.5717	120.46	120.17	121.74	-1.0286					56	29	3	0	0	0	0.37135	1	9307	9307		54.776	7.119	1	182990	+	+	25609	16207	20932	20959	28658	28658					0.050500894624974535
KPNANRIAL	9	Unmodified	_KPNANRIAL_					0	0	0		ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENSG00000131981|ENST00000254301|LGALS3	ENSG00000131981|ENST00000254301|LGALS3	MULTI-MSMS	OvCa9_classI_Rep2	2	498.800537109375	2	498.801083	995.587613	-1.4377	-0.00071715	0.77807	0.0003881	-0.65968	-0.00032905	498.8014440110007	51.637	2.1267	48.824	48.353	50.48	-2.8129					131	42	5	0	0	0	0.11171	10	3387	3381;3387;3393;3399;3405;3417;3423;3429;3462;3481		94.006	25.22	1	2284200			25610	4103	20933	20960	28659;28660;28661;28662;28663;28664;28665;28666;28667;28668	28660					0.08964271291313253
KPNANRIAL	9	Unmodified	_KPNANRIAL_					0	0	0		ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENSG00000131981|ENST00000254301|LGALS3	ENSG00000131981|ENST00000254301|LGALS3	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.8006591796875	2	498.801083	995.587613	-0.50379	-0.00025129	-0.50154	-0.00025017	-1.0053	-0.00050146	498.8008484771887	51.926	2.2205	48.753	48.421	50.642	-3.1734					148	43	5	0	0	0	0.098892	8	3064	3064;3073;3085;3097;3109;3122;3134;3147		97.473	39.661	1	6378800			25611	4103	20933	20960	28669;28670;28671;28672;28673;28674;28675;28676	28669					0.08964271291313253
KPNANRIALDF	11	Unmodified	_KPNANRIALDF_					0	0	0		ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENSG00000131981|ENST00000254301|LGALS3	ENSG00000131981|ENST00000254301|LGALS3	MULTI-MSMS	OvCa9_classI_Rep2	2	629.8489379882812	2	629.848761	1257.68297	-0.34769	-0.00021899	0.12327	7.7642E-05	-0.22442	-0.00014135	629.8487924267984	81.295	1.6955	79.647	79.265	80.961	-1.6485					98	32	5	0	0	0	0.063347	4	6905	6893;6899;6905;6913		80.455	30.919	1	931020			25612	4103	20934	20961	28677;28678;28679;28680	28679					0.0644357969167686
KPNANRIALDF	11	Unmodified	_KPNANRIALDF_					0	0	0		ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENSG00000131981|ENST00000254301|LGALS3	ENSG00000131981|ENST00000254301|LGALS3	MULTI-MSMS	OvCa9_classI_Rep2	2	420.23443603515625	3	420.234933	1257.68297	0.68567	0.00028814	-1.0276	-0.00043182	-0.34189	-0.00014367	420.2344713128282	81.289	1.7459	79.641	79.215	80.961	-1.6485					104	33	5	0	0	0	0.4397	1	6895	6895		58.246	12.274	1	784250			25613	4103	20934	20961	28681	28681					0.0644357969167686
KPNANRIALDF	11	Unmodified	_KPNANRIALDF_					0	0	0		ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENSG00000131981|ENST00000254301|LGALS3	ENSG00000131981|ENST00000254301|LGALS3	MULTI-MSMS	OvCa9_classI_Rep3	3	629.8493041992188	2	629.848761	1257.68297	-0.30872	-0.00019444	0.018761	1.1816E-05	-0.28995	-0.00018263	629.8487031721623	81.948	1.9431	79.652	79.233	81.176	-2.2963					122	38	5	0	0	0	0.020621	3	4599	4587;4599;4611		114.89	44.078	1	965080			25614	4103	20934	20961	28682;28683;28684	28683					0.0644357969167686
KPNANRIALDF	11	Unmodified	_KPNANRIALDF_					0	0	0		ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF	ENSG00000131981|ENST00000254301|LGALS3	ENSG00000131981|ENST00000254301|LGALS3	MULTI-MSMS	OvCa9_classI_Rep4_	4	629.8494262695312	2	629.848761	1257.68297	-0.51346	-0.0003234	0.17277	0.00010882	-0.34069	-0.00021458	629.8488554548073	82.276	1.7509	79.593	79.251	81.002	-2.683					96	35	5	0	0	0	0.054709	4	6784	6784;6795;6807;6820		85.862	44.435	1	1106900			25615	4103	20934	20961	28685;28686;28687;28688	28685					0.0644357969167686
KPNHTLVLL	9	Unmodified	_KPNHTLVLL_					0	0	0		ENSG00000162654|ENST00000355754|GBP4;GBP6|p.T98N|1|0.25|ENSG00000183347|chr1:89369648-89369648|C/A|missense_variant;GBP6|p.T346Hfs*15|1|0.24|ENSG00000183347|chr1:89381853-89381854|-/C|frameshift_variant;ENSG00000183347|ENST00000370456|GBP6	ENSG00000162654|ENST00000355754|GBP4;GBP6|p.T346Hfs*15|1|0.24|ENSG00000183347|chr1:89381853-89381854|-/C|frameshift_variant	ENSG00000162654|ENST00000355754|GBP4	MSMS	OvCa9_classI_Rep2	2	517.8195190429688	2	517.821484	1033.62842	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.66	1	76.92	76.42	77.42	-1.7398								0	0	0	0.15102	1	6583	6583		64.207	8.7031	1				25616	6212;8069	20935	20962	28689	28689					0.1129461261095912
KPNIGRQSQL	10	Unmodified	_KPNIGRQSQL_					0	0	0		ENSG00000064932|ENST00000361757|SBNO2;nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENST00000587673.5_1_19:1109158-1109530:-|nuORF	ENSG00000064932|ENST00000361757|SBNO2	ENSG00000064932|ENST00000361757|SBNO2	MULTI-MSMS	OvCa9_classI_Rep4_	4	570.8262329101562	2	570.827829	1139.64111	-0.85503	-0.00048808	0.26305	0.00015015	-0.59198	-0.00033792	570.8278920258332	45.813	1.2516	42.774	42.386	43.637	-3.0385					70	23	4	0	0	0	0.36605	1	2381	2381		72.879	1.5835	1	348530			25617	1308	20936	20963	28690	28690					0.07687024003189435
KPNLIQILVNM	11	Unmodified	_KPNLIQILVNM_					0	0	0			REV__ENST00000309720.9_1_X:119393056-119393188:-|nuORF	REV__ENST00000309720.9_1_X:119393056-119393188:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8837890625	2	641.881216	1281.74788	-2.5182	-0.0016164	4.166	0.002674	1.6478	0.0010577	641.8839546837315	150.47	2.9704	149.03	147.78	150.75	-1.4344					235	64	4	0	0	0	0.72473	1	14888	14888		19.104	1.6355	1	344900	+		25618	24326	20937	20964	28691	28691					0.11827438173349947
KPNLKQTQIA	10	Unmodified	_KPNLKQTQIA_					0	0	0			REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	MULTI-SECPEP	OvCa9_classI_Rep3	3	570.8240966796875	2	570.840405	1139.66626	-1.3924	-0.00079481	-2.4555	-0.0014017	-3.8479	-0.0021965	570.8395047191912	84.155	0.22907	81.894	81.745	81.974	-2.261					5	4	2	0	0	0	0.026464	1	4860	4860		79.713	8.8964	1	15919	+		25619	17076	20938	20965	28692	28692					0.10201078805766883
KPNLYTLYE	9	Unmodified	_KPNLYTLYE_					0	0	0			REV__tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	REV__tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	570.8240966796875	2	570.800414	1139.58628	-1.3754	-0.00078505	2.9026	0.0016568	1.5272	0.00087175	570.8016479525068	83.794	1.0962	81.533	81.211	82.307	-2.261					35	23	2	0	0	0	0.027441	1	4860	4860		58.782	7.4465	1	82766	+		25620	31876	20939	20966	28693	28693					0.022065924119033298
KPNNLTFT	8	Unmodified	_KPNNLTFT_					0	0	0			REV__tr|A0A553SSQ9|A0A553SSQ9_NIACIMalonylCoA-acylcarrierproteintransacylaseOS=NialliacirculansOX=1397GN=CEQ21_03555PE=3SV=1	REV__tr|A0A553SSQ9|A0A553SSQ9_NIACIMalonylCoA-acylcarrierproteintransacylaseOS=NialliacirculansOX=1397GN=CEQ21_03555PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	466.76483154296875	2	467.753267	933.491981	2.6627	0.0012455	-0.13897	-6.5003E-05	2.5237	0.0011805	467.753070976793	75.662	0.67134	75.662	75.444	76.115	0					38	16	4	0	0	0	0.028476	1	7585	7585		30.504	11.144	1	2236500	+		25621	30867	20940	20967	28694	28694					0.022574983804247495
KPNNVRAVV	9	Unmodified	_KPNNVRAVV_					0	0	0			REV__tr|A0A7D6ZVK2|A0A7D6ZVK2_9CLOTTrksystempotassiumuptakeproteinTrkAOS=ClostridiumintestinaleOX=36845GN=HZF06_14115PE=4SV=1	REV__tr|A0A7D6ZVK2|A0A7D6ZVK2_9CLOTTrksystempotassiumuptakeproteinTrkAOS=ClostridiumintestinaleOX=36845GN=HZF06_14115PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.8009948730469	2	498.801083	995.587613	-1.4377	-0.00071715	0.77807	0.0003881	-0.65968	-0.00032905	498.8014440110007	51.637	2.1267	48.824	48.353	50.48	-2.8129					131	42	5	0	0	0	0.36502	1	3456	3456		55.504	0	1	2284200	+		25622	32255	20941	20968	28695	28695					0.08964271291324621
KPNRGKAQRL	10	Unmodified	_KPNRGKAQRL_					0	0	0		ENST00000545700.5_1_12:6561414-6561684:+|nuORF	ENST00000545700.5_1_12:6561414-6561684:+|nuORF	ENST00000545700.5_1_12:6561414-6561684:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	584.3562622070312	2	584.357088	1166.69962	-4.6254	-0.0027029	3.4374	0.0020087	-1.1881	-0.00069425	584.3589865391973	145.25	4.5766	144.28	142.9	147.48	-0.97299					233	91	4	0	0	0	0.67931	1	12195	12195		32.812	4.7309	1	156220			25623	13524	20942	20969	28696	28696					0.122941253683166
KPNRVNQN	8	Unmodified	_KPNRVNQN_					0	0	0			REV__tr|A0A553SPG1|A0A553SPG1_NIACIYkyB-likeproteinOS=NialliacirculansOX=1397GN=CEQ21_26310PE=4SV=1	REV__tr|A0A553SPG1|A0A553SPG1_NIACIYkyB-likeproteinOS=NialliacirculansOX=1397GN=CEQ21_26310PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	484.8160705566406	2	485.264865	968.515176	-0.94171	-0.00045698	-2.3733	-0.0011517	-3.315	-0.0016087	485.2635721853038	55.458	1.8843	52.644	52.322	54.206	-2.8139					64	37	3	0	0	0	0.028476	1	3893	3893		68.485	12.98	1	155060	+		25624	30532	20943	20970	28697	28697					0.029659372177547993
KPNSKELLI	9	Unmodified	_KPNSKELLI_					0	0	0			REV__L1P2_dup554|chr5:118974817-118975709:-|1.3792945865888482|0.1408758943517007|3.29|429.0|21|2|sense	REV__L1P2_dup554|chr5:118974817-118975709:-|1.3792945865888482|0.1408758943517007|3.29|429.0|21|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.7833862304688	2	521.318774	1040.623	0.16348	8.5226E-05	1.873	0.00097645	2.0365	0.0010617	521.3196655565658	141.49	0.70026	141.49	141.18	141.88	0					28	13	3	0	0	0	0.027432	1	16522	16522		49.536	0	1	80587	+		25625	28452	20944	20971	28698	28698					0.10430889028475576
KPNVQKLK	8	Unmodified	_KPNVQKLK_					0	0	0		ENSG00000113328|ENST00000340828|CCNG1;nc|ENSG00000113328|P51959-2|CCNG1	ENSG00000113328|ENST00000340828|CCNG1	ENSG00000113328|ENST00000340828|CCNG1	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.809326171875	2	477.808377	953.6022	1.0264	0.00049042	-1.5216	-0.00072704	-0.49522	-0.00023662	477.80742981999833	37.517	1.441	34.624	34.343	35.784	-2.8925					80	28	4	0	0	0	0.57878	1	1388	1388		68.485	2.6815	1	427420			25626	2966	20945	20972	28699	28699					0.12354343439460536
KPPHSPLVL	9	Unmodified	_KPPHSPLVL_					0	0	0		nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC	nc|ENSG00000136997|P01106-1|MYC	nc|ENSG00000136997|P01106-1|MYC	MULTI-MSMS	OvCa9_classI_Rep3	3	494.3004455566406	2	494.302927	986.591301	-5.5844	-0.0027604	1.3123	0.0006487	-4.2721	-0.0021117	494.3034903870968	153.96	1.4815	152.95	152.62	154.1	-1.0076					78	30	5	0	0	0	0.67509	1	13223	13223		23.042	0	1	602630			25627	4547	20946	20973	28700	28700					0.09746941065179726
KPPIVEEDTI	10	Unmodified	_KPPIVEEDTI_					0	0	0		tr|A0A7D6VTN9|A0A7D6VTN9_9CLOTTransmembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21960PE=4SV=1	tr|A0A7D6VTN9|A0A7D6VTN9_9CLOTTransmembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21960PE=4SV=1	tr|A0A7D6VTN9|A0A7D6VTN9_9CLOTTransmembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21960PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	570.80908203125	2	570.810979	1139.6074	0.40803	0.00023291	-2.8784	-0.001643	-2.4704	-0.0014101	570.8091259353043	29.792	0.62796	27.082	26.88	27.508	-2.7097					23	12	3	0	0	0	0.79213	1	761	761		19.997	1.6724	1	67359			25628	35129	20947	20974	28701	28701					0.04318557720762328
KPPKKLKS	8	Unmodified	_KPPKKLKS_					0	0	0			REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A	REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.2717590332031	2	463.313295	924.612037	-0.87086	-0.00040348	0.71552	0.00033151	-0.15535	-7.1974E-05	463.3135782022714	33.043	0.49886	30.334	30.173	30.672	-2.7097					14	9	2	0	0	0	0.028476	1	1131	1131		12.207	0	1	18027	+		25629	22872	20948	20975	28702	28702					0.14671531444855646
KPPLAPKPGTT	11	Unmodified	_KPPLAPKPGTT_					0	0	0		ENSG00000169221|ENST00000409939|TBC1D10B	ENSG00000169221|ENST00000409939|TBC1D10B	ENSG00000169221|ENST00000409939|TBC1D10B	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8289184570312	2	553.832049	1105.64954	-4.2449	-0.002351	0.4939	0.00027354	-3.751	-0.0020775	553.8322290482797	161.53	0.68175	161.3	161.04	161.72	-0.22696					23	13	2	0	0	0	0.70142	1	16472	16472		29.17	2.4771	1	35281			25630	6989	20949	20976	28703	28703					0.10094577919812764
KPPLKISSDPL	11	Unmodified	_KPPLKISSDPL_					0	0	0			REV__ENSG00000198092|ENST00000356291|TMPRSS11F	REV__ENSG00000198092|ENST00000356291|TMPRSS11F	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8555908203125	2	597.858264	1193.70197	-1.9041	-0.0011384	-1.3848	-0.00082789	-3.2889	-0.0019663	597.8573316932594	144.83	3.9651	143.86	141.71	145.68	-0.97301					192	79	4	0	0	0	0.69455	2	12122	12122;12153		31.53	3.6476	1	187110	+		25631	22987	20950	20977	28704;28705	28704					0.11287116262769814
KPPLLWSH	8	Unmodified	_KPPLLWSH_					0	0	0		ENSG00000153292|ENST00000371253|ADGRF1;ENST00000491283.5_1_6:46988465-46993719:-|nuORF;nc|ENSG00000153292|Q5T601-2|ADGRF1;ENST00000471487.5_1_6:46982380-46993719:-|nuORF	ENSG00000153292|ENST00000371253|ADGRF1	ENSG00000153292|ENST00000371253|ADGRF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	489.219482421875	2	489.281995	976.549437	0.17745	8.6821E-05	2.7796	0.00136	2.957	0.0014468	489.28490896476404	47.416	0.65413	44.311	43.93	44.584	-3.1049					22	12	3	0	0	0	0.028476	1	2536	2536		42.474	0	1	38699			25632	5675	20951	20978	28706	28706					0.060223853766501634
KPPLRGAV	8	Unmodified	_KPPLRGAV_					0	0	0		ENST00000526460.1_1_16:87990354-87990582:+|nuORF	ENST00000526460.1_1_16:87990354-87990582:+|nuORF	ENST00000526460.1_1_16:87990354-87990582:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	418.8856201171875	2	419.268887	836.523222	-0.073368	-3.0761E-05	0.19486	8.1698E-05	0.12149	5.0937E-05	419.2687333942579	55.199	1.1265	55.199	54.718	55.845	0					53	26	3	0	0	0	0.028476	1	4480	4480		19.36	0	1	511210			25633	13217	20952	20979	28707	28707					0.09842116205174989
KPPLRIKSN	9	Unmodified	_KPPLRIKSN_					0	0	0		ENST00000502960.1_1_5:140025109-140025175:-|nuORF	ENST00000502960.1_1_5:140025109-140025175:-|nuORF	ENST00000502960.1_1_5:140025109-140025175:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.275146484375	2	526.832383	1051.65021	-1.2291	-0.00064751	2.7276	0.001437	1.4985	0.00078948	526.8323299124435	94.477	0.70895	92.581	92.255	92.964	-1.8956					30	13	3	0	0	0	0.027418	1	6120	6120		49.442	0	1	26907			25634	12857	20953	20980	28708	28708					0.12645417359499334
KPPLRIKSN	9	Unmodified	_KPPLRIKSN_					0	0	0		ENST00000502960.1_1_5:140025109-140025175:-|nuORF	ENST00000502960.1_1_5:140025109-140025175:-|nuORF	ENST00000502960.1_1_5:140025109-140025175:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.2745361328125	2	526.832383	1051.65021	-1.5184	-0.00079993	3.3173	0.0017477	1.799	0.00094775	526.8321795358661	95.054	0.90111	92.585	92.36	93.262	-2.4685					30	17	3	0	0	0	0.027185	1	8360	8360		62.107	0	1	25084			25635	12857	20953	20980	28709	28709					0.12645417359499334
KPPLTSDPE	9	Unmodified	_KPPLTSDPE_					0	0	0			REV__ENST00000402966.1_1_22:42093436-42094048:+|nuORF	REV__ENST00000402966.1_1_22:42093436-42094048:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.2733154296875	2	492.25584	982.497126	0.68316	0.00033629	-2.0444	-0.0010064	-1.3612	-0.00067006	492.2548554158812	38.305	0.49481	35.379	35.206	35.7	-2.9264					14	9	2	0	0	0	0.027462	1	1483	1483		37.159	8.0096	1	29709	+		25636	25423	20954	20981	28710	28710					0.0051775745238273885
KPPLYCYDV	9	Unmodified	_KPPLYCYDV_					0	0	0		nc|ENSG00000147231|Q6NSI4-2|RADX;nc|ENSG00000147231|Q6NSI4-4|RADX;ENSG00000147231|ENST00000372548|RADX	nc|ENSG00000147231|Q6NSI4-2|RADX	nc|ENSG00000147231|Q6NSI4-2|RADX	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.3175659179688	2	549.270435	1096.52632	-0.18993	-0.00010432	0.42149	0.00023151	0.23156	0.00012719	549.2701828139226	75.032	1.0157	71.801	71.58	72.596	-3.2308					32	20	3	0	0	0	0.027462	1	5961	5961		29.15	0	1	64873			25637	5343	20955	20982	28711	28711					-0.01808421522991921
KPPMPVVK	8	Unmodified	_KPPMPVVK_					0	0	0			REV__nc|ENSG00000010539|P98182-3|ZNF200	REV__nc|ENSG00000010539|P98182-3|ZNF200	MULTI-MSMS	OvCa9_classI_Rep2	2	448.2772521972656	2	448.275324	894.536095	5.9919	0.002686	-1.6893	-0.00075728	4.3025	0.0019287	448.2744393122276	25.364	1.3734	22.654	22.379	23.752	-2.7097					68	30	4	0	0	0	0.75241	1	261	261		25.45	3.7478	1	341610	+		25638	16481	20956	20983	28712	28712					0.08460811273062063
KPPPETER	8	Unmodified	_KPPPETER_					0	0	0			REV__LIG1|p.T614Ifs*112|1|0.04|ENSG00000105486|chr19:48128003-48128004|-/GGAGGCGGAGGTTGCAGTGAGCTGAGATC|frameshift_variant	REV__LIG1|p.T614Ifs*112|1|0.04|ENSG00000105486|chr19:48128003-48128004|-/GGAGGCGGAGGTTGCAGTGAGCTGAGATC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.77203369140625	2	477.256174	952.497795	-0.9986	-0.00047659	1.5875	0.00075763	0.58887	0.00028104	477.25690197050915	56.351	0.74373	53.547	53.175	53.919	-2.804					36	14	3	0	0	0	0.028476	1	3930	3930		27.882	6.9353	1	98636	+		25639	17729	20957	20984	28713	28713					0.019645968920940504
KPPPPIIVV	9	Unmodified	_KPPPPIIVV_					0	0	0		ENSG00000008853|ENST00000251822|RHOBTB2;nc|ENSG00000008853|Q9BYZ6-3|RHOBTB2;nc|ENSG00000008853|Q9BYZ6-2|RHOBTB2	ENSG00000008853|ENST00000251822|RHOBTB2	ENSG00000008853|ENST00000251822|RHOBTB2	MULTI-MSMS	OvCa9_classI_Rep2	2	480.3175964355469	2	480.318046	958.621539	0.60293	0.0002896	-0.4826	-0.0002318	0.12033	5.7799E-05	480.3176337071437	130.34	1.4398	130.11	129.86	131.3	-0.22697					62	28	4	0	0	0	0.69895	1	12857	12857		18.324	4.5491	1	107540			25640	926	20958	20985	28714	28714					0.14057299730382056
KPPPSPGDR	9	Unmodified	_KPPPSPGDR_					0	0	0		nc|ENSG00000160326|Q9UGQ3-2|SLC2A6;ENSG00000160326|ENST00000371899|SLC2A6;ENST00000485978.1_1_9:136344088-136344181:-|nuORF;ENST00000414172.1_2_9:136342329-136344181:-|nuORF	nc|ENSG00000160326|Q9UGQ3-2|SLC2A6	nc|ENSG00000160326|Q9UGQ3-2|SLC2A6	MULTI-MSMS	OvCa99_classI_Rep5	1	475.75439453125	2	475.756341	949.498129	-0.16721	-7.9552E-05	-3.0561	-0.001454	-3.2233	-0.0015335	475.75481479330756	23.41	0.74202	23.41	23.144	23.886	0					21	14	2	0	0	0	0.5811	1	315	315		34.173	5.023	1	61907			25641	6059	20959	20986	28715	28715					0.021360166119507085
KPPRNIGL	8	Unmodified	_KPPRNIGL_					0	0	0		L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|83|2|sense	L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|83|2|sense	L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|83|2|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	447.760986328125	2	447.779619	893.544686	3.0244	0.0013543	2.7822	0.0012458	5.8067	0.0026001	447.7813409888874	41.32	0.3449	38.61	38.487	38.832	-2.7097					9	6	2	0	0	0	0.028476	1	2169	2169		33.516	21.309	1	10661			25642	14751	20960	20987	28716	28716					0.09365501233889972
KPPSGKSTPV	10	Unmodified	_KPPSGKSTPV_					0	0	0		nc|ENSG00000127527|Q9UBC2|EPS15L1;ENSG00000127527|ENST00000455140|EPS15L1	nc|ENSG00000127527|Q9UBC2|EPS15L1	nc|ENSG00000127527|Q9UBC2|EPS15L1	MULTI-MSMS	OvCa9_classI_Rep2	2	499.28656005859375	2	499.287474	996.560395	1.4373	0.00071765	-4.0729	-0.0020335	-2.6355	-0.0013159	499.2852483844891	28.641	0.87767	25.931	25.716	26.594	-2.7097					28	18	3	0	0	0	0.65849	1	605	605		35.152	2.3396	1	139830			25643	3837	20961	20988	28717	28717					0.06197742960284813
KPPVFLHLA	9	Unmodified	_KPPVFLHLA_					0	0	0		ENST00000266458.9_1_12:10365411-10365633:+|nuORF	ENST00000266458.9_1_12:10365411-10365633:+|nuORF	ENST00000266458.9_1_12:10365411-10365633:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	511.311279296875	2	511.313295	1020.61204	-1.151	-0.0005885	-3.368	-0.0017221	-4.5189	-0.0023106	511.31154424823063	53.764	1.5438	50.951	50.578	52.122	-2.8139					82	30	5	0	0	0	0.47884	1	3689	3689		44.531	1.6668	1	1114000			25644	9957	20962	20989	28718	28718					0.10255531444852295
KPQALTSLME	10	Unmodified	_KPQALTSLME_					0	0	0		HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|30|1|sense	HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|30|1|sense	HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|30|1|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.2967529296875	2	559.299724	1116.5849	-2.4871	-0.001391	-0.24777	-0.00013858	-2.7349	-0.0015296	559.2996528952687	152.06	0.67981	150.62	150.4	151.08	-1.435					20	13	2	0	0	0	0.66721	1	15044	15044		34.173	7.3764	1	18910			25645	14475	20963	20990	28719	28719					0.03126635051489757
KPQALTSLME	10	Unmodified	_KPQALTSLME_					0	0	0		HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|30|1|sense	HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|30|1|sense	HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|30|1|sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	559.299724	1116.5849	-2.8416	-0.0015893	-0.74931	-0.00041909	-3.591	-0.0020084	559.299480591927	151.15	0.39798	150.92	150.75	151.14	-0.22696	0.19536	-0.0017363	NaN	34.173	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13630			25646	14475	20963	20990							0.03126635051489757
KPQALTSLME	10	Unmodified	_KPQALTSLME_					0	0	0		HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|30|1|sense	HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|30|1|sense	HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|30|1|sense	MULTI-MATCH	OvCa9_classI_Rep3	3		2	559.299724	1116.5849	-5.1633	-0.0028878	1.9496	0.0010904	-3.2137	-0.0017974	559.300724434476	151.59	0.65416	150.63	150.4	151.06	-0.95647	-0.094972	0.0012826	NaN	34.173	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23662			25647	14475	20963	20990							0.03126635051489757
KPQDGKALHSS	11	Unmodified	_KPQDGKALHSS_					0	0	0			REV__nc|ENSG00000002919|Q9Y5W9-2|SNX11	REV__nc|ENSG00000002919|Q9Y5W9-2|SNX11	MULTI-MSMS	OvCa99_classI_Rep5	1	584.3084716796875	2	584.309469	1166.60439	-0.33011	-0.00019288	-0.00074888	-4.3758E-07	-0.33086	-0.00019332	584.3092269809172	22.291	0.23828	22.291	22.142	22.381	0					11	5	3	0	0	0	0.7046	1	194	194		28.081	2.5074	1	50514	+		25648	16368	20964	20991	28720	28720					0.02774727386622544
KPQDYKKRL	9	Unmodified	_KPQDYKKRL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENST00000465552.1_1_3:41277978-41278230:+|nuORF;ENST00000485265.1_1_3:41277322-41278230:+|nuORF	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OvCa9_classI_Rep2	2	588.3486328125	2	588.348397	1174.68224	-1.7548	-0.0010324	1.6869	0.00099251	-0.067867	-3.9929E-05	588.3492584572326	34.182	0.98975	31.472	31.168	32.158	-2.7097					48	19	3	0	0	0	0.42676	2	1289	1289;1302		49.442	4.9991	1	164020			25649	6867	20965	20992	28721;28722	28721					0.10188785042646487
KPQDYKKRL	9	Unmodified	_KPQDYKKRL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENST00000465552.1_1_3:41277978-41278230:+|nuORF;ENST00000485265.1_1_3:41277322-41278230:+|nuORF	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	588.3480834960938	2	588.348397	1174.68224	0.45677	0.00026874	-0.45757	-0.00026921	-0.00079463	-4.6752E-07	588.3479881563707	32.763	1.7903	30.067	29.403	31.193	-2.6954					123	40	4	0	0	0	0.083631	7	800	755;777;787;800;811;847;862		101.6	43.371	1	200610			25650	6867	20965	20992	28723;28724;28725;28726;28727;28728;28729	28726					0.10188785042646487
KPQELSSDL	9	Unmodified	_KPQELSSDL_					0	0	0		ENSG00000127947|ENST00000248594|PTPN12;PTPN12-RSBN1L|6|fusion;PTPN12-RSBN1L|3|fusion;nc|ENSG00000127947|Q05209-2|PTPN12;nc|ENSG00000127947|Q05209-3|PTPN12;PTPN12-RSBN1L|4|fusion;PTPN12-RSBN1L|5|fusion;PTPN12-RSBN1L|1|fusion;PTPN12-RSBN1L|2|fusion	ENSG00000127947|ENST00000248594|PTPN12	ENSG00000127947|ENST00000248594|PTPN12	MULTI-MSMS	OvCa9_classI_Rep2	2	508.7667236328125	2	508.766571	1015.51859	-2.5431	-0.0012939	2.0709	0.0010536	-0.47219	-0.00024023	508.7675091980884	37.121	1.4274	34.411	33.942	35.37	-2.7097					85	28	4	0	0	0	0.27001	1	1693	1693		66.429	9.7082	1	798860			25651	3852	20966	20993	28730	28730					0.011451424810957178
KPQGMRRF	8	Unmodified	_KPQGMRRF_					0	0	0			REV__nc|ENSG00000116731|Q13029-2|PRDM2	REV__nc|ENSG00000116731|Q13029-2|PRDM2	MULTI-MSMS	OvCa9_classI_Rep3	3	510.2809143066406	2	510.282003	1018.54945	1.5054	0.00076817	-2.9992	-0.0015305	-1.4938	-0.00076228	510.28027552379746	62.202	1.7602	59.168	58.656	60.417	-3.0339					84	39	3	0	0	0	0.66704	1	2231	2231		50.025	5.9077	1	77332	+		25652	18317	20967	20994	28731	28731					0.04092062105007699
KPQGQRTSL	9	Unmodified	_KPQGQRTSL_					0	0	0		ENSG00000163781|ENST00000260810|TOPBP1;ENST00000513818.1_1_3:133337003-133343000:-|nuORF	ENSG00000163781|ENST00000260810|TOPBP1	ENSG00000163781|ENST00000260810|TOPBP1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7889709472656	2	507.788173	1013.56179	-1.0317	-0.00052386	0.80291	0.00040771	-0.22875	-0.00011615	507.78846049471156	32.995	1.0937	30.285	30.075	31.168	-2.7097					38	21	3	0	0	0	0.44568	1	1141	1141		47.657	5.1829	1	88774			25653	6358	20968	20995	28732	28732					0.05555377049051913
KPQGRVVNV	9	Unmodified	_KPQGRVVNV_					0	0	0		ENSG00000159228|ENST00000290349|CBR1	ENSG00000159228|ENST00000290349|CBR1	ENSG00000159228|ENST00000290349|CBR1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.800048828125	2	498.801083	995.587613	-1.4377	-0.00071715	0.77807	0.0003881	-0.65968	-0.00032905	498.8014440110007	51.637	2.1267	48.824	48.353	50.48	-2.8129					131	42	5	0	0	0	0.44294	1	3373	3373		47.916	0	1	2284200			25654	5999	20969	20996	28733	28733					0.08964271291324621
KPQIKTSDP	9	Unmodified	_KPQIKTSDP_					0	0	0		nc|ENSG00000164520|Q8TD07-4|RAET1E;nc|ENSG00000164520|Q8TD07-3|RAET1E;nc|ENSG00000164520|Q8TD07-5|RAET1E;nc|ENSG00000164520|Q8TD07-2|RAET1E;ENSG00000164520|ENST00000357183|RAET1E;nc|ENSG00000164520|Q8TD07-6|RAET1E	nc|ENSG00000164520|Q8TD07-4|RAET1E	nc|ENSG00000164520|Q8TD07-4|RAET1E	MULTI-MSMS	OvCa9_classI_Rep2	2	507.2815246582031	2	507.284931	1012.55531	0.0066851	3.3913E-06	-2.7534	-0.0013968	-2.7467	-0.0013934	507.283412188162	31.081	1.5294	28.371	28.15	29.679	-2.7097					66	30	3	0	0	0	0.53483	1	954	954		39.253	5.0803	1	500220			25655	6463	20970	20997	28734	28734					0.04953439097653245
KPQILQYTL	9	Unmodified	_KPQILQYTL_					0	0	0			REV__tr|A0A7D6VY77|A0A7D6VY77_9CLOTNUDIXdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15745PE=3SV=1	REV__tr|A0A7D6VY77|A0A7D6VY77_9CLOTNUDIXdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15745PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.3240356445312	2	552.326599	1102.63865	1.1282	0.00062312	2.1737	0.0012006	3.3019	0.0018237	552.3275168124161	123.6	0.96943	123.6	122.91	123.87	0					34	20	2	0	0	0	0.027462	1	14180	14180		25.574	3.6142	1	106360	+		25656	31811	20971	20998	28735	28735					0.09143175545523263
KPQNKIKML	9	Unmodified	_KPQNKIKML_					0	0	0			REV__nc|ENSG00000168297|Q7Z7A4-5|PXK	REV__nc|ENSG00000168297|Q7Z7A4-5|PXK	MULTI-MSMS	OvCa9_classI_Rep2	2	550.3363037109375	2	550.336444	1098.65834	0.57262	0.00031513	-1.2293	-0.00067655	-0.65671	-0.00036141	550.3357316353752	66.746	1.4881	64.051	63.617	65.105	-2.6958					65	29	3	0	0	0	0.48324	1	5184	5184		44.117	6.9577	1	370560	+		25657	21360	20972	20999	28736	28736					0.11295228284643599
KPQPRPQTL	9	Unmodified	_KPQPRPQTL_					0	0	0		ENSG00000010219|ENST00000543431|DYRK4;nc|ENSG00000010219|Q9NR20-3|DYRK4;nc|ENSG00000010219|Q9NR20-4|DYRK4;ENST00000544050.1_1_12:4721694-4722916:+|nuORF;nc|ENSG00000010219|Q9NR20-5|DYRK4;nc|ENSG00000010219|Q9NR20-2|DYRK4;nc|ENSG00000010219|Q9NR20|DYRK4	ENSG00000010219|ENST00000543431|DYRK4	ENSG00000010219|ENST00000543431|DYRK4	MSMS	OvCa9_classI_Rep4_	4	532.8135986328125	2	532.81419	1063.61383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.904	1	37.949	37.449	38.449	-2.9541								0	0	0	0.022462	1	1791	1791		95.815	21.84	1				25658	939	20973	21000	28737	28737					0.0845654046281652
KPQPRPQTL	9	Unmodified	_KPQPRPQTL_					0	0	0		ENSG00000010219|ENST00000543431|DYRK4;nc|ENSG00000010219|Q9NR20-3|DYRK4;nc|ENSG00000010219|Q9NR20-4|DYRK4;ENST00000544050.1_1_12:4721694-4722916:+|nuORF;nc|ENSG00000010219|Q9NR20-5|DYRK4;nc|ENSG00000010219|Q9NR20-2|DYRK4;nc|ENSG00000010219|Q9NR20|DYRK4	ENSG00000010219|ENST00000543431|DYRK4	ENSG00000010219|ENST00000543431|DYRK4	MSMS	OvCa9_classI_Rep4_	4	532.8142700195312	2	532.81419	1063.61383	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.022	1	38.067	37.567	38.567	-2.9541								0	0	0	0.11726	1	1805	1805		68.787	14.011	1				25659	939	20973	21000	28738	28738					0.0845654046281652
KPQRQCNIY	9	Unmodified	_KPQRQCNIY_					0	0	0			REV__ENST00000302014.10_1_5:140012753-140012807:-|nuORF	REV__ENST00000302014.10_1_5:140012753-140012807:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.345947265625	2	575.295307	1148.57606	-0.042944	-2.4706E-05	0.031	1.7834E-05	-0.011944	-6.8713E-06	575.7969591910392	45.207	0.35406	45.207	44.977	45.332	0					17	7	3	0	0	0	0.027462	1	3110	3110		24.203	12.567	1	50651	+		25660	24254	20974	21001	28739	28739					0.007717062056826762
KPQVHQAF	8	Unmodified	_KPQVHQAF_					0	0	0			REV__tr|A0A553SLY5|A0A553SLY5_NIACIAnthranilatephosphoribosyltransferaseOS=NialliacirculansOX=1397GN=trpDPE=3SV=1	REV__tr|A0A553SLY5|A0A553SLY5_NIACIAnthranilatephosphoribosyltransferaseOS=NialliacirculansOX=1397GN=trpDPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.80816650390625	2	477.761426	953.5083	-2.1715	-0.0010374	-2.2741	-0.0010865	-4.4455	-0.0021239	477.76021987558903	37.662	0.73773	34.952	34.731	35.469	-2.7097					19	14	2	0	0	0	0.028476	1	1685	1685		40.573	0	1	41044	+		25661	30277	20975	21002	28740	28740					0.029686243371884302
KPQVSLQPLP	10	Unmodified	_KPQVSLQPLP_					0	0	0			REV__ENSG00000186806|ENST00000335624|VSIG10L	REV__ENSG00000186806|ENST00000335624|VSIG10L	MULTI-MSMS	OvCa9_classI_Rep2	2	553.829833984375	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.73378	1	14318	14318		26.693	2.4902	1	245610	+		25662	22611	20976	21003	28741	28741					0.10094577919812764
KPRAAARSAW	10	Unmodified	_KPRAAARSAW_					0	0	0			REV__ENSG00000189227|ENST00000342683|C15orf61	REV__ENSG00000189227|ENST00000342683|C15orf61	MULTI-MSMS	OvCa9_classI_Rep2	2	557.3169555664062	2	557.317432	1112.62031	-1.9914	-0.0011099	1.5109	0.00084204	-0.48054	-0.00026782	557.3181775816473	36.131	1.4315	33.421	33.152	34.583	-2.7097					66	28	4	0	0	0	0.55359	1	1527	1527		47.657	3.5405	1	384370	+		25663	22769	20977	21004	28742	28742					0.06850478414162353
KPRAKSVI	8	Unmodified	_KPRAKSVI_					0	0	0			REV__tr|A0A7D6VTU1|A0A7D6VTU1_9CLOTGTPaseObgOS=ClostridiumintestinaleOX=36845GN=obgEPE=3SV=1	REV__tr|A0A7D6VTU1|A0A7D6VTU1_9CLOTGTPaseObgOS=ClostridiumintestinaleOX=36845GN=obgEPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	449.2795715332031	2	449.795269	897.575986	-0.58371	-0.00026255	0.48178	0.0002167	-0.10193	-4.585E-05	449.7953931223599	43.615	0.47331	43.615	43.393	43.866	0					22	10	3	0	0	0	0.028476	1	2917	2917		12.959	0	1	319620	+		25664	31631	20978	21005	28743	28743					0.12310074267998061
KPRAKSVISL	10	Unmodified	_KPRAKSVISL_					0	0	0			REV__tr|A0A7D6VTU1|A0A7D6VTU1_9CLOTGTPaseObgOS=ClostridiumintestinaleOX=36845GN=obgEPE=3SV=1	REV__tr|A0A7D6VTU1|A0A7D6VTU1_9CLOTGTPaseObgOS=ClostridiumintestinaleOX=36845GN=obgEPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.33154296875	2	549.853316	1097.69208	2.412	0.0013262	-0.14315	-7.8713E-05	2.2689	0.0012475	549.8534363466324	75.412	0.35418	75.412	75.209	75.563	0					11	8	2	0	0	0	0.027145	1	7519	7519		18.262	4.125	1	364120	+		25665	31631	20979	21006	28744	28744					0.14713973048060325
KPRAQLPD	8	Unmodified	_KPRAQLPD_					0	0	0		ENSG00000105656|ENST00000262809|ELL	ENSG00000105656|ENST00000262809|ELL	ENSG00000105656|ENST00000262809|ELL	MULTI-SECPEP	OvCa9_classI_Rep2	2	461.8065490722656	2	462.766709	923.518865	-0.95854	-0.00044358	1.081	0.00050023	0.12243	5.6655E-05	462.7667235202378	60.616	0.52982	57.845	57.606	58.136	-2.7702					12	9	2	0	0	0	0.028476	1	4453	4453		38.806	13.356	1	6151.3			25666	2484	20980	21007	28745	28745					0.054046069916125816
KPRDVSSVEL	10	Unmodified	_KPRDVSSVEL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OvCa9_classI_Rep2	2	565.31396484375	2	565.31422	1128.61389	-0.33863	-0.00019143	-0.4419	-0.00024981	-0.78053	-0.00044124	565.3146090333048	59.402	2.1276	56.622	55.838	57.966	-2.7801					203	40	7	0	0	0	0.020903	2	4317	4311;4317		146.79	13.644	1	1937000			25667	3083	20981	21008	28746;28747	28747					0.05472495672142941
KPRDVSSVEL	10	Unmodified	_KPRDVSSVEL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.3150024414062	2	565.31422	1128.61389	1.334	0.00075416	-0.55902	-0.00031602	0.77503	0.00043813	565.3143654450615	59.91	2.2145	56.48	55.964	58.178	-3.43					94	44	7	0	0	0	0.03438	3	4010	4010;4021;4033		134.77	33.165	1	5926000			25668	3083	20981	21008	28748;28749;28750	28748					0.05472495672142941
KPRDVSSVELL	11	Unmodified	_KPRDVSSVELL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	621.8580322265625	2	621.856252	1241.69795	-0.0062306	-3.8745E-06	-0.035067	-2.1806E-05	-0.041297	-2.5681E-05	621.8560319397119	78.643	1.6093	75.892	75.619	77.228	-2.7514					102	33	5	0	0	0	0.1354	1	6353	6353		81.525	33.565	1	976280			25669	3083	20982	21009	28751	28751					0.08677026769055374
KPRDVSSVELL	11	Unmodified	_KPRDVSSVELL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	621.856252	1241.69795	-0.93887	-0.00058384	0.93409	0.00058087	-0.0047756	-2.9698E-06	621.8566298119666	77.566	1.4854	75.777	75.416	76.901	-1.7894	0.012763	0.0009101	NaN	81.525	93	28	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	557070			25670	3083	20982	21009							0.08677026769055374
KPRDVSSVELL	11	Unmodified	_KPRDVSSVELL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1;ENST00000496323.1_1_2:54880712-54887220:+|nuORF	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	621.856252	1241.69795	0.3388	0.00021068	-0.47981	-0.00029837	-0.14101	-8.7691E-05	621.8557696174132	77.976	1.9407	75.623	75.304	77.244	-2.3527	-0.14068	-0.00084839	NaN	81.525	133	38	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	810810			25671	3083	20982	21009							0.08677026769055374
KPREKVLVI	9	Unmodified	_KPREKVLVI_					0	0	0		nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13;METTL13|p.Q653Hfs*14|1|0.03|ENSG00000010165|chr1:171796615-171796615|G/-|frameshift_variant;ENSG00000010165|ENST00000361735|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	MULTI-MSMS	OvCa9_classI_Rep2	2	541.357421875	2	541.358234	1080.70191	-1.2137	-0.00065704	0.7343	0.00039752	-0.47939	-0.00025952	541.3585147699355	57.508	1.3	54.716	54.377	55.678	-2.792					74	25	4	0	0	0	0.2422	4	4103	4099;4103;4110;4123		69.628	14.851	1	268020			25672	938	20983	21010	28752;28753;28754;28755	28753					0.16479161053416647
KPREKVLVI	9	Unmodified	_KPREKVLVI_					0	0	0		nc|ENSG00000010165|Q8N6R0-1|METTL13;nc|ENSG00000010165|Q8N6R0-4|METTL13;METTL13|p.Q653Hfs*14|1|0.03|ENSG00000010165|chr1:171796615-171796615|G/-|frameshift_variant;ENSG00000010165|ENST00000361735|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	nc|ENSG00000010165|Q8N6R0-1|METTL13	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	541.358234	1080.70191	-0.81374	-0.00044053	0.20186	0.00010928	-0.61188	-0.00033124	541.3582189406661	58.269	1.3527	54.924	54.647	56	-3.3449	0.10399	-0.00025115	NaN	69.628	59	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	295230			25673	938	20983	21010							0.16479161053416647
KPREQWLF	8	Unmodified	_KPREQWLF_					0	0	0		nc|ENSG00000007174|Q9NYC9-2|DNAH9;DNAH9|p.H4399Qfs*22|1|0.04|ENSG00000007174|chr17:11962220-11962220|T/-|frameshift_variant;ENSG00000007174|ENST00000262442|DNAH9	nc|ENSG00000007174|Q9NYC9-2|DNAH9	nc|ENSG00000007174|Q9NYC9-2|DNAH9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.7810668945312	2	552.303458	1102.59236	-0.33332	-0.00018409	-1.8529	-0.0010233	-2.1862	-0.0012074	552.8057943642841	117.14	0.26222	115.77	115.61	115.88	-1.3645					7	4	2	0	0	0	0.028476	1	10934	10934		35.618	11.416	1	6035.4			25674	749	20984	21011	28756	28756					0.04517155434086817
KPRGFARGL	9	Unmodified	_KPRGFARGL_					0	0	0		ENSG00000108468|ENST00000225603|CBX1;ENSG00000122565|ENST00000396386|CBX3	ENSG00000108468|ENST00000225603|CBX1	ENSG00000108468|ENST00000225603|CBX1	MULTI-MSMS	OvCa9_classI_Rep2	2	501.3031005859375	2	501.303793	1000.59303	-0.60395	-0.00030276	0.045197	2.2657E-05	-0.55875	-0.00028011	501.3036625968001	45.316	1.7944	42.606	42.199	43.993	-2.7097					88	35	4	0	0	0	0.61208	1	2665	2665		30.504	4.9296	1	439250			25675	2656	20985	21012	28757	28757					0.09275994873792115
KPRGGRPG	8	Unmodified	_KPRGGRPG_					0	0	0			REV__ENST00000490531.2_1_7:45125488-45125533:-|nuORF	REV__ENST00000490531.2_1_7:45125488-45125533:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	412.7456359863281	2	412.746111	823.477669	3.7849	0.0015622	-3.2675	-0.0013487	0.51741	0.00021356	412.74457223546	130.99	1.0366	129.51	129.21	130.24	-1.4779					35	21	3	0	0	0	0.73417	1	12577	12577		9.4706	4.3837	1	52457	+		25676	26655	20986	21013	28758	28758					0.05886890742806372
KPRGKPKTP	9	Unmodified	_KPRGKPKTP_					0	0	0			REV__ENSG00000131668|ENST00000253968|BARX1	REV__ENSG00000131668|ENST00000253968|BARX1	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.3293762207031	2	504.819276	1007.624	0.093882	4.7394E-05	2.6032	0.0013141	2.6971	0.0013615	504.81910030981584	71.134	1.4491	68.627	67.828	69.277	-2.5071					49	27	4	0	0	0	0.027462	1	5779	5779		11.511	0	1	57620	+		25677	19026	20987	21014	28759	28759					0.12049148188032177
KPRGLVTGK	9	Unmodified	_KPRGLVTGK_					0	0	0			REV__tr|A0A7D6ZG52|A0A7D6ZG52_9CLOTRecombinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20890PE=4SV=1	REV__tr|A0A7D6ZG52|A0A7D6ZG52_9CLOTRecombinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20890PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	478.3064880371094	2	478.306001	954.597449	-0.0091048	-4.3549E-06	-0.34741	-0.00016617	-0.35651	-0.00017052	478.3057665530243	40.536	2.2179	37.826	37.551	39.769	-2.7097					109	44	4	0	0	0	0.49652	1	2074	2074		42.864	2.0861	1	1098200	+		25678	31990	20988	21015	28760	28760					0.11833459296701676
KPRHSLRWRY	10	Unmodified	_KPRHSLRWRY_					0	0	0			REV__nc|ENSG00000137801|P07996-2|THBS1	REV__nc|ENSG00000137801|P07996-2|THBS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.2523498535156	3	466.9337	1397.77927	-0.5941	-0.0002774	-3.5502	-0.0016577	-4.1443	-0.0019351	466.93190602642255	41.761	0.38809	41.761	41.594	41.982	0					20	8	3	0	0	0	0.027165	1	2624	2624		14.694	0	1	188770	+		25679	19477	20989	21016	28761	28761					0.09629192042325485
KPRIHGTRW	9	Unmodified	_KPRIHGTRW_					0	0	0			REV__ENST00000315762.5_9:67793260-67793749:+|nuORF	REV__ENST00000315762.5_9:67793260-67793749:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.2849731445312	2	575.833249	1149.65194	-0.16764	-9.6533E-05	-1.8676	-0.0010754	-2.0353	-0.001172	575.8321415293902	31.827	0.44689	31.827	31.658	32.105	0					17	8	3	0	0	0	0.027462	1	1348	1348		21.96	2.6972	1	144600	+		25680	24400	20990	21017	28762	28762					0.0831047116814716
KPRKAKDL	8	Unmodified	_KPRKAKDL_					0	0	0		ENSG00000136383|ENST00000258888|ALPK3	ENSG00000136383|ENST00000258888|ALPK3	ENSG00000136383|ENST00000258888|ALPK3	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.3053894042969	2	478.306001	954.597449	-0.57959	-0.00027722	-0.42308	-0.00020236	-1.0027	-0.00047958	478.30577377690133	40.613	2.2753	37.659	37.421	39.697	-2.9541					122	43	5	0	0	0	0.59148	1	1808	1808		65.803	1.5959	1	2613300			25681	4488	20991	21018	28763	28763					0.11833459296701676
KPRKLVNTI	9	Unmodified	_KPRKLVNTI_					0	0	0		nc|ENSG00000005007|Q92900|UPF1;ENSG00000005007|ENST00000262803|UPF1;ENST00000600689.1_1_19:18974163-18976510:+|nuORF	nc|ENSG00000005007|Q92900|UPF1	nc|ENSG00000005007|Q92900|UPF1	MULTI-MSMS	OvCa9_classI_Rep2	2	534.8479614257812	2	534.848033	1067.68151	-1.2741	-0.00068147	0.73507	0.00039315	-0.53906	-0.00028832	534.8483651209563	46.243	2.4803	43.534	43.048	45.529	-2.7097					129	49	4	0	0	0	0.083631	8	2745	2727;2733;2745;2757;2763;2769;2790;2797		101.6	30.139	1	907090			25682	841	20992	21019	28764;28765;28766;28767;28768;28769;28770;28771	28766					0.1503799039360274
KPRKLVNTI	9	Unmodified	_KPRKLVNTI_					0	0	0		nc|ENSG00000005007|Q92900|UPF1;ENSG00000005007|ENST00000262803|UPF1;ENST00000600689.1_1_19:18974163-18976510:+|nuORF	nc|ENSG00000005007|Q92900|UPF1	nc|ENSG00000005007|Q92900|UPF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.8484497070312	2	534.848033	1067.68151	-1.2647	-0.00067643	0.84691	0.00045297	-0.41781	-0.00022346	534.8484503258775	46.599	2.5564	43.526	43.083	45.64	-3.0724					115	49	3	0	0	0	0.026923	4	2488	2462;2475;2488;2501		138.83	42.635	1	1089400			25683	841	20992	21019	28772;28773;28774;28775	28774					0.1503799039360274
KPRKNHIAVM	10	Unmodified	_KPRKNHIAVM_					0	0	0			REV__tr|A0A553SMG5|A0A553SMG5_NIACIDNAtopoisomerase4subunitAOS=NialliacirculansOX=1397GN=parCPE=3SV=1	REV__tr|A0A553SMG5|A0A553SMG5_NIACIDNAtopoisomerase4subunitAOS=NialliacirculansOX=1397GN=parCPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.3231201171875	2	597.350417	1192.68628	1.4779	0.00088281	0.54575	0.000326	2.0236	0.0012088	597.3505269824597	111.7	0.45694	111.7	111.47	111.93	0					15	9	2	0	0	0	0.027204	1	12715	12715		17.365	0.89182	1	63454	+		25684	30327	20993	21020	28776	28776					0.0976455126469773
KPRKVSVF	8	Unmodified	_KPRKVSVF_					0	0	0		nc|ENSG00000168685|P16871-2|IL7R	nc|ENSG00000168685|P16871-2|IL7R	nc|ENSG00000168685|P16871-2|IL7R	MULTI-MSMS	OvCa9_classI_Rep2	2	480.80133056640625	2	480.803094	959.591636	-3.5276	-0.0016961	-0.80978	-0.00038934	-4.3374	-0.0020854	480.80256125573777	150.83	1.6209	150.61	150.17	151.79	-0.22696					93	32	4	0	0	0	0.74971	2	15275	15275;15359		26.796	4.9683	1	676150			25685	15168	20994	21021	28777;28778	28777					0.11022360785045748
KPRLQVLT	8	Unmodified	_KPRLQVLT_					0	0	0		ENST00000240364.6_1_17:47788888-47793614:-|nuORF	ENST00000240364.6_1_17:47788888-47793614:-|nuORF	ENST00000240364.6_1_17:47788888-47793614:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	477.80810546875	2	477.808377	953.6022	1.9488	0.00093115	-1.9172	-0.00091603	0.031633	1.5115E-05	477.8073051342162	64.159	1.1625	61.166	60.836	61.999	-2.9933					49	22	3	0	0	0	0.71369	1	2459	2459		40.573	7.057	1	160040			25686	9759	20995	21022	28779	28779					0.12354343439449167
KPRLTHTLL	9	Unmodified	_KPRLTHTLL_					0	0	0			REV__ENST00000535831.5_1_12:123319323-123319551:+|nuORF	REV__ENST00000535831.5_1_12:123319323-123319551:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.8048095703125	2	539.840208	1077.66586	0.38531	0.00020801	-0.95816	-0.00051725	-0.57285	-0.00030925	539.8396148805728	63.132	0.39683	63.132	62.94	63.337	0					16	9	2	0	0	0	0.027462	1	5672	5672		26.693	3.6504	1	204400	+		25687	27291	20996	21023	28780	28780					0.13013703876549698
KPRNKSYGI	9	Unmodified	_KPRNKSYGI_					0	0	0		ENST00000519288.5_1_8:28573184-28573232:+|nuORF	ENST00000519288.5_1_8:28573184-28573232:+|nuORF	ENST00000519288.5_1_8:28573184-28573232:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8056030273438	2	531.806365	1061.59818	-0.13133	-6.9841E-05	0.10118	5.381E-05	-0.030145	-1.6031E-05	531.8062968450569	34.713	1.4032	31.924	31.648	33.051	-2.7881					74	27	5	0	0	0	0.12515	3	1052	1052;1064;1091		90.37	28.44	1	530470			25688	13085	20997	21024	28781;28782;28783	28781					0.06984253945756791
KPRNKSYGI	9	Unmodified	_KPRNKSYGI_					0	0	0		ENST00000519288.5_1_8:28573184-28573232:+|nuORF	ENST00000519288.5_1_8:28573184-28573232:+|nuORF	ENST00000519288.5_1_8:28573184-28573232:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	531.806365	1061.59818	-2.4236	-0.0012889	2.4882	0.0013232	0.064601	3.4355E-05	531.8072127398124	34.347	0.19818	31.637	31.513	31.712	-2.7097	-0.14362	0.0024912	NaN	90.37	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4725.2			25689	13085	20997	21024							0.06984253945756791
KPRNLNVSF	9	Unmodified	_KPRNLNVSF_					0	0	0		nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MULTI-MSMS	OvCa9_classI_Rep2	2	537.8054809570312	2	537.806365	1073.59818	-0.73907	-0.00039747	0.57469	0.00030907	-0.16438	-8.8404E-05	537.8066238213836	64.565	1.7005	61.841	61.441	63.142	-2.7245					97	32	4	0	0	0	0.10363	6	4929	4920;4925;4929;4941;4947;4956		96.19	25.044	1	1245100			25690	825	20998	21025	28784;28785;28786;28787;28788;28789	28786					0.0643225394574074
KPRNLNVSF	9	Unmodified	_KPRNLNVSF_					0	0	0		nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.8072509765625	2	537.806365	1073.59818	-1.3443	-0.00072297	0.7647	0.00041126	-0.57959	-0.00031171	537.8067238632285	65.449	1.4092	61.963	61.694	63.104	-3.4854					85	28	4	0	0	0	0.10363	3	4719	4708;4719;4731		96.19	19.416	1	1793100			25691	825	20998	21025	28790;28791;28792	28791					0.0643225394574074
KPRPPRPRIPE	11	Unmodified	_KPRPPRPRIPE_					0	0	0			REV__nc|ENSG00000163297|P58335-2|ANTXR2	REV__nc|ENSG00000163297|P58335-2|ANTXR2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	447.76129150390625	3	448.273722	1341.79934	-0.48875	-0.0002191	-0.035055	-1.5714E-05	-0.52381	-0.00023481	448.2743241640052	41.445	1.0415	38.465	38.075	39.116	-2.9804					42	19	3	0	0	0	0.026033	1	1903	1903		28.577	6.0151	1	73380	+		25692	20824	20999	21026	28793	28793					0.14210942982253982
KPRPRSPKA	9	Unmodified	_KPRPRSPKA_					0	0	0			REV__SETD5|p.R1157Ifs*12|1|0.41|ENSG00000168137|chr3:9473509-9473521|AGACCTCAAGAGA/-|frameshift_variant	REV__SETD5|p.R1157Ifs*12|1|0.41|ENSG00000168137|chr3:9473509-9473521|AGACCTCAAGAGA/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.8202514648438	2	518.82235	1035.63015	0.51774	0.00026861	1.912	0.00099199	2.4297	0.0012606	518.8233410283354	132.97	1.2332	132.74	132.52	133.76	-0.22696					44	24	2	0	0	0	0.027462	1	13111	13111		23.523	1.5628	1	98719	+		25693	21349	21000	21027	28794	28794					0.11375666419553454
KPRQKKAPE	9	Unmodified	_KPRQKKAPE_					0	0	0		ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4	ENSG00000140463|ENST00000268057|BBS4	ENSG00000140463|ENST00000268057|BBS4	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2867431640625	2	541.327465	1080.64038	0.05725	3.0991E-05	-2.6859	-0.001454	-2.6286	-0.001423	541.3259271158296	62.196	0.46535	62.196	61.994	62.46	0					11	10	2	0	0	0	0.027462	1	5518	5518		29.15	3.6994	1	136650			25694	4842	21001	21028	28795	28795					0.10328229354149698
KPRQTYDDI	9	Unmodified	_KPRQTYDDI_					0	0	0		nc|ENSG00000127663|O94953-2|KDM4B;nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B	nc|ENSG00000127663|O94953-2|KDM4B	nc|ENSG00000127663|O94953-2|KDM4B	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.3268432617188	2	568.290745	1134.56694	-0.96834	-0.0005503	1.4119	0.00080237	0.44355	0.00025206	568.2908346525726	34.404	0.42202	34.404	34.257	34.679	0					14	8	2	0	0	0	0.027462	1	1651	1651		29.15	10.825	1	59778			25695	3842	21002	21029	28796	28796					0.005036361209931783
KPRRVGRAVE	10	Unmodified	_KPRRVGRAVE_					0	0	0		ENST00000276416.10_1_8:22477976-22478066:-|nuORF	ENST00000276416.10_1_8:22477976-22478066:-|nuORF	ENST00000276416.10_1_8:22477976-22478066:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3557739257812	2	584.357088	1166.69962	-2.312	-0.0013511	1.1487	0.00067126	-1.1633	-0.0006798	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.82648	1	14514	14514		15.642	0.77694	1	180810			25696	10030	21003	21030	28797	28797					0.122941253683166
KPRSLQTGF	9	Unmodified	_KPRSLQTGF_					0	0	0		chr20:57393333-57399928|405|15.88|0.73|4.45|+|ENST00000344785|RBM38,RBM38;ENSG00000132819|ENST00000356208|RBM38	chr20:57393333-57399928|405|15.88|0.73|4.45|+|ENST00000344785|RBM38,RBM38	chr20:57393333-57399928|405|15.88|0.73|4.45|+|ENST00000344785|RBM38,RBM38	MULTI-MSMS	OvCa9_classI_Rep2	2	517.2927856445312	2	517.293091	1032.57163	-0.99481	-0.00051461	0.45853	0.00023719	-0.53628	-0.00027741	517.2930565214009	52.492	2.0297	49.679	49.146	51.176	-2.8129					90	40	5	0	0	0	0.38969	1	3504	3504		52.937	6.9645	1	322850			25697	457	21004	21031	28798	28798					0.05664565054416926
KPRSLQTGF	9	Unmodified	_KPRSLQTGF_					0	0	0		chr20:57393333-57399928|405|15.88|0.73|4.45|+|ENST00000344785|RBM38,RBM38;ENSG00000132819|ENST00000356208|RBM38	chr20:57393333-57399928|405|15.88|0.73|4.45|+|ENST00000344785|RBM38,RBM38	chr20:57393333-57399928|405|15.88|0.73|4.45|+|ENST00000344785|RBM38,RBM38	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.2945556640625	2	517.293091	1032.57163	-0.88153	-0.00045601	0.32318	0.00016718	-0.55835	-0.00028883	517.2931193992495	52.808	1.4627	49.6	49.196	50.659	-3.208					81	28	4	0	0	0	0.1944	1	3178	3178		77.318	13.11	1	977110			25698	457	21004	21031	28799	28799					0.05664565054416926
KPRSPDHVL	9	Unmodified	_KPRSPDHVL_					0	0	0		MACF1-CMTM4|1|fusion;MACF1-CMTM4|2|fusion;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1	MACF1-CMTM4|1|fusion;nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OvCa9_classI_Rep2	2	524.7990112304688	2	524.79854	1047.58253	0.25296	0.00013275	-0.57516	-0.00030184	-0.3222	-0.00016909	524.7981408684497	40.677	1.8723	37.968	37.551	39.423	-2.7097					98	37	4	0	0	0	0.22961	8	2075	2052;2057;2063;2075;2081;2087;2100;2106		71.296	23.38	1	622190			25699	15005;14812	21005	21032	28800;28801;28802;28803;28804;28805;28806;28807	28803					0.06063967428713113
KPRSPDHVL	9	Unmodified	_KPRSPDHVL_					0	0	0		MACF1-CMTM4|1|fusion;MACF1-CMTM4|2|fusion;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1	MACF1-CMTM4|1|fusion;nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.7976684570312	2	524.79854	1047.58253	-1.3866	-0.0007277	0.31516	0.0001654	-1.0715	-0.00056231	524.7987265732014	40.872	2.4846	37.918	37.474	39.959	-2.9541					114	47	4	0	0	0	0.074342	5	1790	1769;1778;1790;1802;1815		104.75	35.96	1	1831400			25700	15005;14812	21005	21032	28808;28809;28810;28811;28812	28810					0.06063967428713113
KPRSPVVEL	9	Unmodified	_KPRSPVVEL_					0	0	0		ENSG00000173020|ENST00000308595|GRK2;ENST00000416281.6_1_11:67049840-67052918:+|nuORF;ENST00000524899.1_1_11:67052494-67052918:+|nuORF	ENSG00000173020|ENST00000308595|GRK2	ENSG00000173020|ENST00000308595|GRK2	MULTI-MSMS	OvCa9_classI_Rep2	2	512.8108520507812	2	512.811116	1023.60768	-1.8058	-0.00092605	1.1623	0.00059606	-0.64348	-0.00032999	512.811598612442	62.701	1.4465	59.957	59.449	60.895	-2.7444					78	27	4	0	0	0	0.2077	2	4713	4707;4713		75.043	12.936	1	1076400			25701	7343	21006	21033	28813;28814	28814					0.09682022231288556
KPRSPVVEL	9	Unmodified	_KPRSPVVEL_					0	0	0		ENSG00000173020|ENST00000308595|GRK2;ENST00000416281.6_1_11:67049840-67052918:+|nuORF;ENST00000524899.1_1_11:67052494-67052918:+|nuORF	ENSG00000173020|ENST00000308595|GRK2	ENSG00000173020|ENST00000308595|GRK2	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.8114013671875	2	512.811116	1023.60768	-0.41663	-0.00021365	-0.32455	-0.00016643	-0.74118	-0.00038009	512.8108378200972	63.609	1.5966	60.134	59.772	61.368	-3.475					87	32	4	0	0	0	0.1944	3	4489	4468;4477;4489		77.318	10.846	1	1546800			25702	7343	21006	21033	28815;28816;28817	28817					0.09682022231288556
KPRSTTPHSLK	11	Unmodified	_KPRSTTPHSLK_					0	0	0			REV__nc|ENSG00000147010|Q96B97-3|SH3KBP1	REV__nc|ENSG00000147010|Q96B97-3|SH3KBP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	626.3627319335938	2	626.362036	1250.70952	0.91603	0.00057377	-0.84789	-0.00053109	0.068141	4.2681E-05	626.3614117570846	35.259	1.4998	32.41	32.139	33.639	-2.849					82	29	4	0	0	0	0.50761	1	1143	1143		53.089	4.4874	1	384260	+		25703	20037	21007	21034	28818	28818					0.0941926858304214
KPRTKAPK	8	Unmodified	_KPRTKAPK_					0	0	0		ENST00000498815.1_1_9:19376293-19376674:-|nuORF;ENST00000422735.1_1_9:88989919-88990300:-|nuORF;ENSG00000137154|ENST00000380394|RPS6	ENST00000498815.1_1_9:19376293-19376674:-|nuORF	ENST00000498815.1_1_9:19376293-19376674:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	463.2998962402344	2	463.300719	924.586885	0.3212	0.00014881	-0.65578	-0.00030382	-0.33458	-0.00015501	463.3002881383064	30.933	0.49146	28.224	28.1	28.592	-2.7097					16	9	2	0	0	0	0.6962	1	899	899		44.117	0	1	57602			25704	4562	21008	21035	28819	28819					0.12157476642266829
KPRTQPGLL	9	Unmodified	_KPRTQPGLL_					0	0	0			REV__ENST00000393599.2_1_19:10677298-10677478:-|nuORF	REV__ENST00000393599.2_1_19:10677298-10677478:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	505.3124084472656	2	505.311284	1008.60801	0.47509	0.00024007	-0.54013	-0.00027293	-0.065038	-3.2864E-05	505.31058796975003	74.13	0.60912	74.13	73.907	74.517	0					34	15	3	0	0	0	0.3076	1	7313	7313		62.107	3.3255	1	3699900	+		25705	25284	21009	21036	28820	28820					0.10405441951138528
KPRTVATPL	9	Unmodified	_KPRTVATPL_					0	0	0		nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	MULTI-MSMS	OvCa9_classI_Rep2	2	491.8053894042969	2	491.805834	981.597115	-0.58237	-0.00028641	0.39596	0.00019474	-0.18641	-9.1676E-05	491.8059066811213	50.582	1.7337	47.788	47.331	49.065	-2.794					87	34	4	0	0	0	0.19758	3	3282	3263;3270;3282		76.774	14.13	1	434780			25706	2570	21010	21037	28821;28822;28823	28823					0.10558039576847023
KPRTVATPL	9	Unmodified	_KPRTVATPL_					0	0	0		nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	MULTI-MSMS	OvCa9_classI_Rep4_	4	491.8049011230469	2	491.805834	981.597115	-0.68971	-0.0003392	0.11781	5.794E-05	-0.5719	-0.00028126	491.805848800366	50.819	1.8717	47.646	47.308	49.18	-3.1734					91	36	4	0	0	0	0.091859	5	2972	2938;2948;2960;2972;2984		99.375	30.89	1	1525200			25707	2570	21010	21037	28824;28825;28826;28827;28828	28827					0.10558039576847023
KPRVTTPTV	9	Unmodified	_KPRVTTPTV_					0	0	0		ENSG00000198807|ENST00000361487|PAX9	ENSG00000198807|ENST00000361487|PAX9	ENSG00000198807|ENST00000361487|PAX9	MULTI-MSMS	OvCa9_classI_Rep2	2	499.80401611328125	2	499.803291	997.59203	-0.79283	-0.00039626	0.56419	0.00028199	-0.22863	-0.00011427	499.803503863494	58.325	1.5782	55.54	55.08	56.658	-2.7844					54	30	2	0	0	0	0.21231	1	4215	4215		74.255	5.4682	1	917370			25708	8880	21011	21038	28829	28829					0.09313735714215454
KPRWQRHR	8	Unmodified	_KPRWQRHR_					0	0	0			REV__ENST00000489998.5_1_1:157773664-157773814:-|nuORF	REV__ENST00000489998.5_1_1:157773664-157773814:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	582.9898071289062	2	582.33649	1162.65843	-0.85605	-0.00049851	-0.35155	-0.00020472	-1.2076	-0.00070323	582.3361643363486	21.639	0.75846	20.3	20.017	20.776	-1.3386					38	14	3	0	0	0	0.028476	1	220	220		19.36	3.7182	1	142050	+		25709	26648	21012	21039	28830	28830					0.08360409119495671
KPSAASRK	8	Unmodified	_KPSAASRK_					0	0	0			REV__ENST00000361711.7_1_16:83983049-83992865:+|nuORF	REV__ENST00000361711.7_1_16:83983049-83992865:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	422.5750732421875	2	422.753601	843.49265	-0.53163	-0.00022475	0.17736	7.4978E-05	-0.35427	-0.00014977	422.7535332951231	37.368	0.32587	37.368	37.159	37.485	0					13	6	3	0	0	0	0.028476	1	2033	2033		6.7355	0	1	175710	+		25710	24859	21013	21040	28831	28831					0.06464337820136734
KPSASQYKSKL	11	Unmodified	_KPSASQYKSKL_					0	0	0		ENSG00000135837|ENST00000367607|CEP350;CEP350|p.M1638Ifs*15|1|0.05|ENSG00000135837|chr1:180053090-180053091|-/ATGGCATAACAACATTGAA|frameshift_variant	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MULTI-MSMS	OvCa99_classI_Rep5	1	412.9031066894531	3	412.903072	1235.68739	0.50485	0.00020846	-2.4715	-0.0010205	-1.9666	-0.00081203	412.90194365821856	68.42	0.82711	68.42	68.192	69.019	0					50	19	3	0	0	0	0.65267	1	6488	6488		39.873	1.1195	1	3985200			25711	4421	21014	21041	28832	28832					0.07897044114611163
KPSATGPKP	9	Unmodified	_KPSATGPKP_					0	0	0			REV__ENSG00000275342|ENST00000615670|PRAG1	REV__ENSG00000275342|ENST00000615670|PRAG1	MULTI-SECPEP	OvCa99_classI_Rep5	1	441.7889709472656	2	441.75581	881.497067	0.18916	8.3563E-05	0.1459	6.4452E-05	0.33506	0.00014801	441.7556652969026	65.595	0.40446	65.595	65.426	65.831	0					15	9	2	0	0	0	0.027462	1	6060	6060		14.137	0	1	181250	+		25712	23625	21015	21042	28833	28833					0.05157802243036258
KPSCWYKEC	9	Unmodified	_KPSCWYKEC_					0	0	0			REV__ATP2C2|p.C933W|1|0.16|ENSG00000064270|chr16:84463690-84463690|T/G|missense_variant	REV__ATP2C2|p.C933W|1|0.16|ENSG00000064270|chr16:84463690-84463690|T/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.3171997070312	2	572.25172	1142.48889	-0.9749	-0.00055789	3.6279	0.0020761	2.653	0.0015182	572.2535521559213	28.18	0.29911	28.18	28.041	28.34	0					7	5	2	0	0	0	0.027462	1	906	906		24.519	6.1948	1	10148	+		25713	15677	21016	21043	28834	28834					-0.07665836060232323
KPSDLGTKL	9	Unmodified	_KPSDLGTKL_					0	0	0		STIP1-GPR137|1|fusion;nc|ENSG00000168439|P31948-3|STIP1;ENSG00000168439|ENST00000305218|STIP1;nc|ENSG00000168439|P31948-2|STIP1	STIP1-GPR137|1|fusion	STIP1-GPR137|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	479.78173828125	2	479.782025	957.549496	-2.9508	-0.0014157	2.92	0.001401	-0.030781	-1.4768E-05	479.78329356454816	36.627	0.98598	33.918	33.548	34.534	-2.7097					53	19	4	0	0	0	0.40818	1	1602	1602		51.193	1.6567	1	381500			25714	6908	21017	21044	28835	28835					0.06902340586009359
KPSEKIQVL	9	Unmodified	_KPSEKIQVL_					0	0	0		nc|ENSG00000135218|P16671-4|CD36;nc|ENSG00000135218|P16671-3|CD36;ENSG00000135218|ENST00000447544|CD36	nc|ENSG00000135218|P16671-4|CD36	nc|ENSG00000135218|P16671-4|CD36	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.3193359375	2	521.318774	1040.623	-0.078119	-4.0725E-05	-0.414	-0.00021582	-0.49212	-0.00025655	521.3183953969705	60.496	1.045	57.066	56.799	57.844	-3.43					60	20	4	0	0	0	0.14855	2	4097	4097;4107		85.161	18.033	1	421300			25715	4358	21018	21045	28836;28837	28836					0.10430889028475576
KPSFIGTIR	9	Unmodified	_KPSFIGTIR_					0	0	0			REV__tr|A0A7D6ZGT2|A0A7D6ZGT2_9CLOTNucleoidocclusionproteinOS=ClostridiumintestinaleOX=36845GN=nocPE=3SV=1	REV__tr|A0A7D6ZGT2|A0A7D6ZGT2_9CLOTNucleoidocclusionproteinOS=ClostridiumintestinaleOX=36845GN=nocPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	509.80584716796875	2	509.805834	1017.59712	0.20522	0.00010462	-0.48984	-0.00024972	-0.28462	-0.0001451	509.8054777946676	71.178	1.5389	68.499	68.203	69.742	-2.6795					58	30	2	0	0	0	0.33652	1	3296	3296		58.782	0.97068	1	358630	+		25716	32007	21019	21046	28838	28838					0.08902039576855714
KPSIDSLVLDE	11	Unmodified	_KPSIDSLVLDE_					0	0	0			REV__ENSG00000055609|ENST00000262189|KMT2C	REV__ENSG00000055609|ENST00000262189|KMT2C	MULTI-SECPEP	OvCa9_classI_Rep4_	4	608.2985229492188	2	608.326993	1214.63943	0.30866	0.00018777	3.2679	0.001988	3.5766	0.0021757	608.3288429692205	58.471	1.5081	55.079	54.346	55.854	-3.392					57	29	3	0	0	0	0.025404	1	3901	3901		36.447	12.924	1	198930	+		25717	16712	21020	21047	28839	28839					0.04069925403905472
KPSKEAKAQ	9	Unmodified	_KPSKEAKAQ_					0	0	0			REV__ENSG00000134744|ENST00000257177|TUT4	REV__ENSG00000134744|ENST00000257177|TUT4	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.7847595214844	2	493.785099	985.555644	-0.82091	-0.00040535	0.25396	0.0001254	-0.56695	-0.00027995	493.785226963214	42.316	2.1756	39.336	38.645	40.82	-2.9804					124	41	5	0	0	0	0.1804	1	2044	2044		79.713	5.7379	1	4863300	+		25718	19225	21021	21048	28840	28840					0.06228858817519267
KPSKEELK	8	Unmodified	_KPSKEELK_					0	0	0		tr|A0A7D6VUE2|A0A7D6VUE2_9CLOTPeptidemethioninesulfoxidereductaseMsrBOS=ClostridiumintestinaleOX=36845GN=msrBPE=3SV=1	tr|A0A7D6VUE2|A0A7D6VUE2_9CLOTPeptidemethioninesulfoxidereductaseMsrBOS=ClostridiumintestinaleOX=36845GN=msrBPE=3SV=1	tr|A0A7D6VUE2|A0A7D6VUE2_9CLOTPeptidemethioninesulfoxidereductaseMsrBOS=ClostridiumintestinaleOX=36845GN=msrBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	479.7816467285156	2	479.782025	957.549496	-2.9508	-0.0014157	2.92	0.001401	-0.030781	-1.4768E-05	479.78329356454816	36.627	0.98598	33.918	33.548	34.534	-2.7097					53	19	4	0	0	0	0.73039	1	1594	1594		36.447	1.2947	1	381500			25719	35180	21022	21049	28841	28841					0.0690234058599799
KPSKTKTSK	9	Unmodified	_KPSKTKTSK_					0	0	0		ENST00000474433.5_1_7:105254161-105283525:-|nuORF;nc|ENSG00000146776|Q9ULK2-3|ATXN7L1;ENSG00000146776|ENST00000419735|ATXN7L1	ENST00000474433.5_1_7:105254161-105283525:-|nuORF	ENST00000474433.5_1_7:105254161-105283525:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.2452697753906	2	502.808574	1003.60259	-0.85481	-0.00042981	2.5933	0.0013039	1.7385	0.00087413	502.8100355671722	41.966	0.1268	41.966	41.897	42.024	0					4	2	2	0	0	0	0.027462	1	2657	2657		19.997	0	1	56666			25720	5305	21023	21050	28842	28842					0.10093718368682403
KPSLEREK	8	Unmodified	_KPSLEREK_					0	0	0			REV__ENST00000489430.1_1_1:228296601-228296928:-|nuORF	REV__ENST00000489430.1_1_1:228296601-228296928:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	493.7851867675781	2	493.785099	985.555644	1.4093	0.00069587	-1.7511	-0.00086466	-0.34184	-0.00016879	493.78415838053036	41.942	1.876	39.232	38.832	40.708	-2.7097					88	37	4	0	0	0	0.42649	1	2213	2213		84.916	5.4645	1	1028200	+		25721	26640	21024	21051	28843	28843					0.06228858817519267
KPSLEREK	8	Unmodified	_KPSLEREK_					0	0	0			REV__ENST00000489430.1_1_1:228296601-228296928:-|nuORF	REV__ENST00000489430.1_1_1:228296601-228296928:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.7859191894531	2	493.785099	985.555644	-0.82091	-0.00040535	0.25396	0.0001254	-0.56695	-0.00027995	493.785226963214	42.316	2.1756	39.336	38.645	40.82	-2.9804					124	41	5	0	0	0	0.32444	1	1946	1946		102.77	3.3984	1	4863300	+		25722	26640	21024	21051	28844	28844					0.06228858817519267
KPSLGAVK	8	Unmodified	_KPSLGAVK_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-2|PRRC2B;nc|ENSG00000288701|Q5JSZ5-3|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.2189636230469	2	400.255446	798.496338	1.0876	0.00043533	-1.8755	-0.00075067	-0.78783	-0.00031533	400.25454949556786	44.728	0.44545	44.728	44.44	44.886	0					12	9	2	0	0	0	0.028476	1	3043	3043		11.511	0	1	78435			25723	15389	21025	21052	28845	28845					0.08903007593994516
KPSLHLFIP	9	Unmodified	_KPSLHLFIP_					0	0	0		tr|A0A7D7A2V0|A0A7D7A2V0_9CLOTFlippaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18955PE=4SV=1	tr|A0A7D7A2V0|A0A7D7A2V0_9CLOTFlippaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18955PE=4SV=1	tr|A0A7D7A2V0|A0A7D7A2V0_9CLOTFlippaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18955PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.7944946289062	2	526.318577	1050.6226	0.77985	0.00041045	2.2262	0.0011717	3.0061	0.0015822	526.319345223261	139.32	0.53229	139.32	139.12	139.66	0					18	10	2	0	0	0	0.027462	1	16288	16288		30.504	9.5567	1	51222			25724	36091	21026	21053	28846	28846					0.09931514099275773
KPSLNKSNV	9	Unmodified	_KPSLNKSNV_					0	0	0		ENSG00000103540|ENST00000694978|CCP110;nc|ENSG00000103540|O43303|CCP110	ENSG00000103540|ENST00000694978|CCP110	ENSG00000103540|ENST00000694978|CCP110	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.7849426269531	2	493.785099	985.555644	-0.82091	-0.00040535	0.25396	0.0001254	-0.56695	-0.00027995	493.785226963214	42.316	2.1756	39.336	38.645	40.82	-2.9804					124	41	5	0	0	0	0.28934	1	2007	2007		64.207	0	1	4863300			25725	2327	21027	21054	28847	28847					0.06228858817530636
KPSLPFTSL	9	Unmodified	_KPSLPFTSL_					0	0	0		ENST00000473378.1_1_X:70331248-70331389:-|nuORF;ENST00000276110.6_1_X:70331245-70331389:-|nuORF;ENST00000512747.3_1_X:70329223-70331389:-|nuORF;ENSG00000147168|ENST00000374202|IL2RG	ENST00000473378.1_1_X:70331248-70331389:-|nuORF	ENST00000473378.1_1_X:70331248-70331389:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	495.28662109375	2	495.286943	988.559333	0.20595	0.00010201	-0.30592	-0.00015152	-0.099963	-4.951E-05	495.28664794488304	106.83	1.5678	106.52	106.13	107.69	-0.30836					90	31	4	0	0	0	0.1804	4	9948	9948;9952;9978;9983		79.713	15.505	1	400820			25726	5339	21028	21055	28848;28849;28850;28851	28848					0.06459528591392427
KPSLPFTSL	9	Unmodified	_KPSLPFTSL_					0	0	0		ENST00000473378.1_1_X:70331248-70331389:-|nuORF;ENST00000276110.6_1_X:70331245-70331389:-|nuORF;ENST00000512747.3_1_X:70329223-70331389:-|nuORF;ENSG00000147168|ENST00000374202|IL2RG	ENST00000473378.1_1_X:70331248-70331389:-|nuORF	ENST00000473378.1_1_X:70331248-70331389:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	495.2854919433594	2	495.286943	988.559333	0.022917	1.135E-05	-0.20463	-0.00010135	-0.18171	-8.9999E-05	495.2867278887102	107.82	1.6029	106.62	106.17	107.77	-1.1978					86	30	4	0	0	0	0.075543	5	7658	7658;7663;7668;7674;7682		104.06	27.283	1	471660			25727	5339	21028	21055	28852;28853;28854;28855;28856	28852					0.06459528591392427
KPSLPFTSL	9	Unmodified	_KPSLPFTSL_					0	0	0		ENST00000473378.1_1_X:70331248-70331389:-|nuORF;ENST00000276110.6_1_X:70331245-70331389:-|nuORF;ENST00000512747.3_1_X:70329223-70331389:-|nuORF;ENSG00000147168|ENST00000374202|IL2RG	ENST00000473378.1_1_X:70331248-70331389:-|nuORF	ENST00000473378.1_1_X:70331248-70331389:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.2860107421875	2	495.286943	988.559333	-1.8823	-0.00093227	1.1765	0.00058273	-0.70574	-0.00034954	495.2873689989915	108.37	1.9345	106.64	106.22	108.15	-1.7256					94	37	4	0	0	0	0.1944	3	9926	9903;9926;9940		77.318	17.375	1	532550			25728	5339	21028	21055	28857;28858;28859	28858					0.06459528591392427
KPSLWDKI	8	Unmodified	_KPSLWDKI_					0	0	0			REV__nc|ENSG00000166928|Q96JA4-2|MS4A14	REV__nc|ENSG00000166928|Q96JA4-2|MS4A14	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.78607177734375	2	493.78711	985.559667	-0.82091	-0.00040535	-3.8194	-0.001886	-4.6403	-0.0022913	493.785226963214	42.316	2.1756	39.336	38.645	40.82	-2.9804					124	41	5	0	0	0	0.37357	4	1958	1958;1970;1994;2032		93.195	18.967	1	4863300	+		25729	21238	21029	21056	28860;28861;28862;28863	28860					0.06630948311226348
KPSPKTIAF	9	Unmodified	_KPSPKTIAF_					0	0	0		ENSG00000147679|ENST00000309822|UTP23	ENSG00000147679|ENST00000309822|UTP23	ENSG00000147679|ENST00000309822|UTP23	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.79583740234375	2	494.794935	987.575317	0.37179	0.00018396	-1.7333	-0.00085761	-1.3615	-0.00067366	494.79389405866465	59.762	1.5289	56.37	55.904	57.433	-3.392					80	30	4	0	0	0	0.10421	2	4000	4000;4013		96.034	27.295	1	564670			25730	5372	21030	21057	28864;28865	28864					0.08103234828286077
KPSPKTIAF	9	Unmodified	_KPSPKTIAF_					0	0	0		ENSG00000147679|ENST00000309822|UTP23	ENSG00000147679|ENST00000309822|UTP23	ENSG00000147679|ENST00000309822|UTP23	MULTI-MATCH	OvCa9_classI_Rep2	2		2	494.794935	987.575317	-0.077476	-3.8335E-05	-0.030961	-1.5319E-05	-0.10844	-5.3654E-05	494.7947329776676	59.039	1.3828	56.259	55.689	57.072	-2.7801	-0.055915	0.00032851	NaN	96.034	80	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265550			25731	5372	21030	21057							0.08103234828286077
KPSQKATVL	9	Unmodified	_KPSQKATVL_					0	0	0		nc|ENSG00000114541|Q9Y2L6-2|FRMD4B;ENSG00000114541|ENST00000398540|FRMD4B	nc|ENSG00000114541|Q9Y2L6-2|FRMD4B	nc|ENSG00000114541|Q9Y2L6-2|FRMD4B	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.2971496582031	2	486.297842	970.581131	-0.26833	-0.00013049	-0.32722	-0.00015913	-0.59555	-0.00028962	486.29756122474794	39.644	1.3717	36.69	36.417	37.789	-2.9541					48	26	2	0	0	0	0.14855	1	1642	1642		85.161	5.7098	1	381690			25732	3026	21031	21058	28866	28866					0.09466333339935318
KPSQQGRY	8	Unmodified	_KPSQQGRY_					0	0	0		nc|ENSG00000211776|A0A0B4J234|TRAV2	nc|ENSG00000211776|A0A0B4J234|TRAV2	nc|ENSG00000211776|A0A0B4J234|TRAV2	MULTI-MSMS	OvCa99_classI_Rep5	1	482.2549743652344	2	482.253966	962.493378	0.26143	0.00012607	0.59148	0.00028524	0.8529	0.00041132	482.2541213530398	46.217	1.3147	46.217	45.979	47.294	0					67	29	3	0	0	0	0.67745	1	3239	3239		47.916	1.9636	1	3710100			25733	15291	21032	21059	28867	28867					0.010631324691871669
KPSRLGPSH	9	Unmodified	_KPSRLGPSH_					0	0	0			REV__ENST00000302351.8_1_5:73936805-73937162:-|nuORF	REV__ENST00000302351.8_1_5:73936805-73937162:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.80035400390625	2	489.777608	977.540663	0.40717	0.00019942	-3.0673	-0.0015023	-2.6602	-0.0013029	489.77594532729455	160.63	0.40472	160.63	160.4	160.81	0					11	7	2	0	0	0	0.027462	1	18823	18823		21.96	3.6355	1	47894	+		25734	24258	21033	21060	28868	28868					0.05099411740184223
KPSSLAQKE	9	Unmodified	_KPSSLAQKE_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.M3578Ifs*3|1|0.03|ENSG00000048707|chr1:12369624-12369625|-/TATAT|frameshift_variant	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.7861022949219	2	494.277106	986.53966	-0.90211	-0.00044589	4.0538	0.0020037	3.1517	0.0015578	494.2792642981298	42.971	0.57742	39.964	39.853	40.431	-3.0074					15	10	2	0	0	0	0.027418	1	2032	2032		65.465	19.009	1	37415			25735	1159	21034	21061	28869	28869					0.04585152580625618
KPSSRELLL	9	Unmodified	_KPSSRELLL_					0	0	0			REV__ENST00000549209.5_1_12:56565201-56568439:-|nuORF	REV__ENST00000549209.5_1_12:56565201-56568439:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.338623046875	2	521.816399	1041.61824	-1.3529	-0.00070599	1.3357	0.00069698	-0.017276	-9.015E-06	521.8171648916834	66.002	0.74149	66.002	65.79	66.531	0					23	18	2	0	0	0	0.027462	1	6157	6157		16.473	0	1	1183500	+		25736	27454	21035	21062	28870	28870					0.09910004885728085
KPSSTTPRL	9	Unmodified	_KPSSTTPRL_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	OvCa9_classI_Rep2	2	493.7847595214844	2	493.785099	985.555644	1.4093	0.00069587	-1.7511	-0.00086466	-0.34184	-0.00016879	493.78415838053036	41.942	1.876	39.232	38.832	40.708	-2.7097					88	37	4	0	0	0	0.1944	6	2231	2219;2225;2231;2243;2261;2286		77.318	18.526	1	1028200			25737	1151	21036	21063	28871;28872;28873;28874;28875;28876	28873					0.062288588175078985
KPSSTTPRL	9	Unmodified	_KPSSTTPRL_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-2|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.7850036621094	2	493.785099	985.555644	-0.82091	-0.00040535	0.25396	0.0001254	-0.56695	-0.00027995	493.785226963214	42.316	2.1756	39.336	38.645	40.82	-2.9804					124	41	5	0	0	0	0.16562	2	1982	1982;2020		82.241	5.4664	1	4863300			25738	1151	21036	21063	28877;28878	28877					0.062288588175078985
KPSTIIGRD	9	Unmodified	_KPSTIIGRD_					0	0	0			REV__CUBN|p.N2467Tfs*26|1|0.51|ENSG00000107611|chr10:16913949-16913949|A/-|frameshift_variant	REV__CUBN|p.N2467Tfs*26|1|0.51|ENSG00000107611|chr10:16913949-16913949|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	493.78497314453125	2	493.785099	985.555644	1.4093	0.00069587	-1.7511	-0.00086466	-0.34184	-0.00016879	493.78415838053036	41.942	1.876	39.232	38.832	40.708	-2.7097					88	37	4	0	0	0	0.3249	1	2281	2281		60.118	14.146	1	1028200	+		25739	16257	21037	21064	28879	28879					0.06228858817530636
KPSTKALVL	9	Unmodified	_KPSTKALVL_					0	0	0		nc|ENSG00000113456|O60671-2|RAD1;ENSG00000113456|ENST00000382038|RAD1	nc|ENSG00000113456|O60671-2|RAD1	nc|ENSG00000113456|O60671-2|RAD1	MULTI-MSMS	OvCa9_classI_Rep2	2	478.810302734375	2	478.810585	955.606617	-0.54522	-0.00026105	0.41903	0.00020064	-0.12618	-6.0418E-05	478.81062665352715	59.19	1.7052	56.41	55.838	57.544	-2.7801					91	32	4	0	0	0	0.045281	6	4296	4296;4303;4309;4315;4320;4326		122.18	23.053	1	541770			25740	2973	21038	21065	28880;28881;28882;28883;28884;28885	28880					0.12703807862362737
KPSTKALVL	9	Unmodified	_KPSTKALVL_					0	0	0		nc|ENSG00000113456|O60671-2|RAD1;ENSG00000113456|ENST00000382038|RAD1	nc|ENSG00000113456|O60671-2|RAD1	nc|ENSG00000113456|O60671-2|RAD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.81201171875	2	478.810585	955.606617	0.48308	0.0002313	-1.0882	-0.00052106	-0.60516	-0.00028976	478.80990582618574	59.939	1.6324	56.509	56.062	57.694	-3.43					84	32	4	0	0	0	0.083631	2	4023	4023;4049		101.6	10.415	1	732580			25741	2973	21038	21065	28886;28887	28886					0.12703807862362737
KPSVAVLVT	9	Unmodified	_KPSVAVLVT_					0	0	0			REV__ENSG00000102195|ENST00000218316|GPR50	REV__ENSG00000102195|ENST00000218316|GPR50	MULTI-MSMS	OvCa99_classI_Rep5	1	457.290771484375	2	457.289485	912.564418	0.99148	0.00045339	1.428	0.000653	2.4195	0.0011064	457.28999347617025	141.89	2.9183	141.89	141.44	144.35	0					112	58	3	0	0	0	0.42676	1	16673	16673		49.442	7.0454	1	466050	+		25742	17543	21039	21066	28888	28888					0.10463832454001931
KPSVKGRAQL	10	Unmodified	_KPSVKGRAQL_					0	0	0		ENSG00000146731|ENST00000275603|CCT6A;nc|ENSG00000146731|P40227-2|CCT6A;ENST00000492618.5_1_7:56127237-56129562:+|nuORF	ENSG00000146731|ENST00000275603|CCT6A	ENSG00000146731|ENST00000275603|CCT6A	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.3357543945312	2	542.33529	1082.65603	0.34726	0.00018833	-0.58303	-0.0003162	-0.23577	-0.00012787	542.3347918687969	36.811	1.0958	33.918	33.645	34.741	-2.8925					42	21	2	0	0	0	0.34811	1	1304	1304		75.043	14.071	1	213790			25743	5303	21040	21067	28889	28889					0.1180051587118669
KPSVKRGKAI	10	Unmodified	_KPSVKRGKAI_					0	0	0			REV__tr|A0A7D7A4G7|A0A7D7A4G7_9CLOT3-isopropylmalatedehydrataselargesubunitOS=ClostridiumintestinaleOX=36845GN=leuCPE=3SV=1	REV__tr|A0A7D7A4G7|A0A7D7A4G7_9CLOT3-isopropylmalatedehydrataselargesubunitOS=ClostridiumintestinaleOX=36845GN=leuCPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.3187866210938	2	542.353483	1082.69241	-1.6932	-0.00091831	0.3279	0.00017784	-1.3653	-0.00074048	542.353443283606	43.412	0.72327	40.404	40.168	40.891	-3.0074					21	13	2	0	0	0	0.026968	1	2099	2099		29.17	6.1276	1	47186	+		25744	32606	21041	21068	28890	28890					0.15437392767898928
KPSVNEQN	8	Unmodified	_KPSVNEQN_					0	0	0		ENST00000523321.5_1_8:95835614-95871872:+|nuORF;INTS8|p.V788Gfs*31|1|0.04|ENSG00000164941|chr8:94867286-94867286|T/-|frameshift_variant;nc|ENSG00000164941|Q75QN2-2|INTS8;ENSG00000164941|ENST00000523731|INTS8	ENST00000523321.5_1_8:95835614-95871872:+|nuORF	ENST00000523321.5_1_8:95835614-95871872:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	458.2306213378906	2	458.230156	914.445759	4.3066	0.0019734	-3.6892	-0.0016905	0.61746	0.00028294	458.2283650485069	25.264	0.7321	22.554	22.428	23.161	-2.7097					23	15	2	0	0	0	0.65062	1	233	233		53.351	7.3792	1	57819			25745	6503	21042	21069	28891	28891					-0.0148856652166387
KPTAAPTET	9	Unmodified	_KPTAAPTET_					0	0	0			REV__nc|ENSG00000156983|P55201-4|BRPF1	REV__nc|ENSG00000156983|P55201-4|BRPF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.295166015625	2	458.242732	914.470912	0.070795	3.2441E-05	0.43421	0.00019898	0.50501	0.00023142	458.24270922760326	68.911	0.97971	68.911	68.692	69.672	0					43	23	3	0	0	0	0.027426	1	6539	6539		56.721	1.2168	1	2881200	+		25746	20508	21043	21070	28892	28892					0.010254882809135779
KPTAETLVP	9	Unmodified	_KPTAETLVP_					0	0	0			REV__nc|ENSG00000183530|Q5THK1-2|PRR14L	REV__nc|ENSG00000183530|Q5THK1-2|PRR14L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.7626647949219	2	478.276575	954.538597	-0.7094	-0.00033929	1.7456	0.00083488	1.0362	0.00049559	478.2774063568425	54.176	1.3298	50.929	50.263	51.593	-3.2474					41	25	2	0	0	0	0.027462	1	3283	3283		40.573	22.248	1	79912	+		25747	22367	21044	21071	28893	28893					0.059509382117198584
KPTAVIVKPVV	11	Unmodified	_KPTAVIVKPVV_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.88134765625	2	575.881542	1149.74853	2.6187	0.0015081	-2.856	-0.0016447	-0.23732	-0.00013667	575.8797536026407	130.77	1.5941	129.29	128.86	130.45	-1.4779					88	32	4	0	0	0	0.72064	1	12613	12613		22.58	0.61977	1	237440	+		25748	28942;32737;28943	21045	21072	28894	28894					0.1796460088467029
KPTGLEFQP	9	Unmodified	_KPTGLEFQP_					0	0	0		L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|4|1|sense	L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|4|1|sense	L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|4|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.295166015625	2	508.7742	1015.53385	2.3019	0.0011712	0.016878	8.587E-06	2.3188	0.0011798	508.77400803118195	86.036	0.39923	86.036	85.912	86.311	0					15	9	3	0	0	0	0.027462	1	9040	9040		24.519	4.5224	1	183370			25749	14680	21046	21073	28895	28895					0.02670054068948957
KPTIAPKPQL	10	Unmodified	_KPTIAPKPQL_					0	0	0			REV__ENST00000424518.5_1_12:54357896-54358059:-|nuORF	REV__ENST00000424518.5_1_12:54357896-54358059:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	546.83935546875	2	546.842416	1091.67028	-4.8246	-0.0026383	1.033	0.00056488	-3.7916	-0.0020734	546.8429110027589	158.57	1.287	158.34	158.06	159.35	-0.22697					77	26	5	0	0	0	0.74374	1	16092	16092		25.574	0.12388	1	487190	+		25750	25646	21047	21074	28896	28896					0.12811168299458586
KPTIAPKPQL	10	Unmodified	_KPTIAPKPQL_					0	0	0			REV__ENST00000424518.5_1_12:54357896-54358059:-|nuORF	REV__ENST00000424518.5_1_12:54357896-54358059:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	546.8402709960938	2	546.842416	1091.67028	-7.0439	-0.0038519	3.2968	0.0018028	-3.7471	-0.0020491	546.8440760274939	158.88	1.6198	157.61	157.26	158.88	-1.267					96	31	5	0	0	0	0.62299	4	13707	13698;13707;13713;13719		39.253	6.4404	1	890150	+		25751	25646	21047	21074	28897;28898;28899;28900	28898					0.12811168299458586
KPTIAPKPQL	10	Unmodified	_KPTIAPKPQL_					0	0	0			REV__ENST00000424518.5_1_12:54357896-54358059:-|nuORF	REV__ENST00000424518.5_1_12:54357896-54358059:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.8401489257812	2	546.842416	1091.67028	-6.4593	-0.0035322	2.5386	0.0013882	-3.9208	-0.0021441	546.8437237604664	159.32	1.8651	157.73	157.41	159.27	-1.5858					118	42	5	0	0	0	0.50999	2	15726	15726;15815		52.937	6.9645	1	864300	+		25752	25646	21047	21074	28901;28902	28901					0.12811168299458586
KPTIKMLF	8	Unmodified	_KPTIKMLF_					0	0	0		tr|A0A7D6VSU6|A0A7D6VSU6_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08295PE=4SV=1	tr|A0A7D6VSU6|A0A7D6VSU6_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08295PE=4SV=1	tr|A0A7D6VSU6|A0A7D6VSU6_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08295PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.2980651855469	2	489.296256	976.57796	-0.53933	-0.00026389	4.1282	0.0020199	3.5888	0.001756	489.29812618715977	46.129	1.2425	43.056	42.771	44.014	-3.0724					56	23	3	0	0	0	0.73626	1	2409	2409		33.516	3.0119	1	565190			25753	35059	21048	21075	28903	28903					0.08873366961586271
KPTMLYITL	9	Unmodified	_KPTMLYITL_					0	0	0			REV__ENST00000285083.9_1_3:16307006-16312478:+|nuORF	REV__ENST00000285083.9_1_3:16307006-16312478:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.861572265625	2	540.312103	1078.60965	-1.013	-0.00054733	3.9397	0.0021287	2.9267	0.0015813	540.3140859018927	76.649	0.56732	73.71	73.504	74.072	-2.9389					29	11	3	0	0	0	0.027462	1	6122	6122		44.117	14.967	1	259350	+		25754	24131	21049	21076	28904	28904					0.07349314924840655
KPTMLYITL	9	Unmodified	_KPTMLYITL_					0	0	0			REV__ENST00000285083.9_1_3:16307006-16312478:+|nuORF	REV__ENST00000285083.9_1_3:16307006-16312478:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	540.312103	1078.60965	-0.10814	-5.8432E-05	3.1599	0.0017073	3.0518	0.0016489	540.3136505698832	76.304	1.411	73.933	73.67	75.081	-2.3715	0.11136	-0.00041446	NaN	44.117	59	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	322980	+		25755	24131	21049	21076							0.07349314924840655
KPTNMTSTPIF	11	Unmodified	_KPTNMTSTPIF_					0	0	0			REV__tr|A0A553SHS3|A0A553SHS3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_13505PE=4SV=1	REV__tr|A0A553SHS3|A0A553SHS3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_13505PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	618.8187866210938	2	618.818281	1235.62201	0.91929	0.00056887	-1.2435	-0.0007695	-0.32421	-0.00020063	618.817489083801	142.93	2.1583	142.93	142.49	144.64	0					116	43	5	0	0	0	0.55686	1	16700	16700		48.602	12.155	1	3336600	+		25756	29832	21050	21077	28905	28905					0.0136230659722969
KPTPLFLLSY	10	Unmodified	_KPTPLFLLSY_					0	0	0			REV__ENSG00000140323|ENST00000267889|DISP2	REV__ENSG00000140323|ENST00000267889|DISP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.8466186523438	2	589.844625	1177.6747	0.89552	0.00052822	2.2635	0.0013351	3.159	0.0018633	589.8458241780872	36.274	1.5457	33.425	33.139	34.685	-2.849					73	30	4	0	0	0	0.67931	1	1235	1235		32.812	1.2826	1	187130	+		25757	19662	21051	21078	28906	28906					0.09296632722384857
KPTPRPIAWIS	11	Unmodified	_KPTPRPIAWIS_					0	0	0		ENST00000335997.11_1_X:129199166-129199613:-|nuORF	ENST00000335997.11_1_X:129199166-129199613:-|nuORF	ENST00000335997.11_1_X:129199166-129199613:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3670654296875	2	633.371872	1264.72919	-4.8823	-0.0030923	0.81247	0.0005146	-4.0699	-0.0025777	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.72491	1	13300	13300		16.717	0.24424	1	765700			25758	10505	21052	21079	28907	28907					0.10741644593804267
KPTQSKLIE	9	Unmodified	_KPTQSKLIE_					0	0	0			REV__ENST00000502249.6_1_4:119435248-119475252:+|nuORF	REV__ENST00000502249.6_1_4:119435248-119475252:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.3101196289062	2	522.308406	1042.60226	-1.3075	-0.00068294	-0.50604	-0.00026431	-1.8136	-0.00094724	522.3076708198822	53.786	1.7405	50.538	50.161	51.901	-3.2474					72	33	4	0	0	0	0.12515	1	3308	3308		90.37	0	1	1360800	+		25759	19862	21053	21080	28908	28908					0.0826629864880033
KPTRHFLP	8	Unmodified	_KPTRHFLP_					0	0	0		nc|nan|Q96M02|C10orf90;ENSG00000154493|ENST00000488181|C10orf90	nc|nan|Q96M02|C10orf90	nc|nan|Q96M02|C10orf90	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.2889404296875	2	498.292894	994.571235	0.019808	9.8703E-06	3.5275	0.0017577	3.5473	0.0017676	498.2955925361808	79.976	0.29649	77.636	77.513	77.81	-2.3399					6	5	2	0	0	0	0.028476	1	4359	4359		44.117	17.321	1	11496			25760	5742	21054	21081	28909	28909					0.07373190125224482
KPTRKKLAYN	10	Unmodified	_KPTRKKLAYN_					0	0	0			REV__tr|A0A7D6VWX0|A0A7D6VWX0_9CLOTAcyltransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05755PE=4SV=1	REV__tr|A0A7D6VWX0|A0A7D6VWX0_9CLOTAcyltransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05755PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	406.916748046875	3	406.915423	1217.72444	0.49251	0.00020041	-0.74675	-0.00030386	-0.25424	-0.00010345	406.91504632771233	59.475	1.6783	59.475	59.265	60.943	0					109	41	4	0	0	0	0.76328	1	5119	5119		23.378	0.79825	1	8973700	+		25761	31757	21055	21082	28910	28910					0.1242876045103003
KPTRLFLSG	9	Unmodified	_KPTRLFLSG_					0	0	0			REV__ENST00000437325.2_1_1:235901419-235901638:+|nuORF	REV__ENST00000437325.2_1_1:235901419-235901638:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	509.8058776855469	2	509.805834	1017.59712	0.20522	0.00010462	-0.48984	-0.00024972	-0.28462	-0.0001451	509.8054777946676	71.178	1.5389	68.499	68.203	69.742	-2.6795					58	30	2	0	0	0	0.21231	1	3309	3309		74.255	13.283	1	358630	+		25762	19197	21056	21083	28911	28911					0.08902039576832976
KPTSSEGSF	9	Unmodified	_KPTSSEGSF_					0	0	0		nc|ENSG00000147724|Q49AJ0-3|FAM135B;nc|ENSG00000147724|Q49AJ0-4|FAM135B;nc|ENSG00000147724|Q49AJ0-2|FAM135B;ENST00000482951.6_1_8:139144838-139379577:-|nuORF;ENSG00000147724|ENST00000395297|FAM135B	nc|ENSG00000147724|Q49AJ0-3|FAM135B	nc|ENSG00000147724|Q49AJ0-3|FAM135B	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.25408935546875	2	470.224539	938.434526	-0.9216	-0.00043336	0.40416	0.00019004	-0.51745	-0.00024332	470.2246859099477	34.328	0.42383	34.328	34.209	34.632	0					12	8	2	0	0	0	0.027462	1	1676	1676		34.173	12.47	1	29321			25763	5375	21057	21084	28912	28912					-0.037153886157966554
KPTTLPQKV	9	Unmodified	_KPTTLPQKV_					0	0	0		ENSG00000119685|ENST00000298832|TTLL5;nc|ENSG00000119685|Q6EMB2-2|TTLL5;ENST00000557219.1_1_14:76349072-76368569:+|nuORF	ENSG00000119685|ENST00000298832|TTLL5	ENSG00000119685|ENST00000298832|TTLL5	MULTI-MSMS	OvCa9_classI_Rep2	2	506.31195068359375	2	506.313492	1010.61243	-2.3314	-0.0011804	-0.43282	-0.00021914	-2.7642	-0.0013995	506.3130527025525	35.126	0.94359	32.416	32.158	33.102	-2.7097					40	18	3	0	0	0	0.63422	1	1410	1410		27.882	4.8398	1	144430			25764	3382	21058	21085	28913	28913					0.1075490637402936
KPTTPASKIT	10	Unmodified	_KPTTPASKIT_					0	0	0			REV__nc|ENSG00000116690|Q92954-5|PRG4	REV__nc|ENSG00000116690|Q92954-5|PRG4	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.3084106445312	2	522.308406	1042.60226	-1.0242	-0.00053494	0.335	0.00017497	-0.68919	-0.00035997	522.3084396585988	51.271	1.0058	48.098	47.771	48.776	-3.1734					38	19	3	0	0	0	0.58067	1	3005	3005		44.377	5.1244	1	337360	+		25765	18312	21059	21086	28914	28914					0.0826629864880033
KPTTPASKIT	10	Unmodified	_KPTTPASKIT_					0	0	0			REV__nc|ENSG00000116690|Q92954-5|PRG4	REV__nc|ENSG00000116690|Q92954-5|PRG4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	522.308406	1042.60226	-0.90722	-0.00047385	0.51218	0.00026752	-0.39504	-0.00020633	522.3086289219711	50.907	0.79298	48.113	47.827	48.62	-2.794	0.0073598	9.8686E-05	NaN	44.377	38	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82753	+		25766	18312	21059	21086							0.0826629864880033
KPTTPASKIT	10	Unmodified	_KPTTPASKIT_					0	0	0			REV__nc|ENSG00000116690|Q92954-5|PRG4	REV__nc|ENSG00000116690|Q92954-5|PRG4	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	522.308406	1042.60226	-1.0242	-0.00053494	0.335	0.00017497	-0.68919	-0.00035997	522.3084396585988	51.271	1.0058	48.098	47.771	48.776	-3.1734	-0.0073598	-8.6396E-05	NaN	44.377	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	337360	+		25767	18312	21059	21086							0.0826629864880033
KPTWKEKR	8	Unmodified	_KPTWKEKR_					0	0	0			REV__tr|A0A7D7AEQ8|A0A7D7AEQ8_9CLOTDihydroxy-aciddehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_03400PE=3SV=1	REV__tr|A0A7D7AEQ8|A0A7D7AEQ8_9CLOTDihydroxy-aciddehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_03400PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.3442993164062	2	536.816733	1071.61891	-1.6732	-0.0008982	0.86235	0.00046292	-0.81084	-0.00043527	536.817835103144	45.974	0.83625	42.901	42.613	43.45	-3.0724					21	15	2	0	0	0	0.028476	1	2350	2350		24.203	0	1	44559	+		25768	32707	21060	21087	28915	28915					0.08596844325415987
KPTWTDKRQLI	11	Unmodified	_KPTWTDKRQLI_					0	0	0			REV__ENSG00000266074|ENST00000675386|BAHCC1	REV__ENSG00000266074|ENST00000675386|BAHCC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.7239685058594	3	462.601504	1384.78268	-1.5026	-0.00069512	2.966	0.0013721	1.4634	0.00067695	462.60299459113907	50.836	1.1701	47.663	47.153	48.323	-3.1734					29	22	2	0	0	0	0.026113	1	2996	2996		30.569	21.77	1	39332	+		25769	23585	21061	21088	28916	28916					0.10568397305655708
KPTWTDKRQLI	11	Unmodified	_KPTWTDKRQLI_					0	0	0			REV__ENSG00000266074|ENST00000675386|BAHCC1	REV__ENSG00000266074|ENST00000675386|BAHCC1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	462.601504	1384.78268	-1.2404	-0.00057379	2.5835	0.0011951	1.3431	0.00062133	462.93701322332015	50.579	0.64249	47.785	47.48	48.123	-2.794	0.061258	-0.00012259	NaN	30.569	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20450	+		25770	23585	21061	21088							0.10568397305655708
KPVAAASHRK	10	Unmodified	_KPVAAASHRK_					0	0	0		tr|A0A553SJD7|A0A553SJD7_NIACI3-hydroxyacyl-CoAdehydrogenase/enoyl-CoAhydratasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_16645PE=4SV=1	tr|A0A553SJD7|A0A553SJD7_NIACI3-hydroxyacyl-CoAdehydrogenase/enoyl-CoAhydratasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_16645PE=4SV=1	tr|A0A553SJD7|A0A553SJD7_NIACI3-hydroxyacyl-CoAdehydrogenase/enoyl-CoAhydratasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_16645PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.8200073242188	2	532.819807	1063.62506	-1.3449	-0.00071657	0.79775	0.00042506	-0.54712	-0.00029151	532.8201736351998	52.226	1.2526	49.018	48.742	49.995	-3.208					61	24	4	0	0	0	0.67931	1	3118	3118		32.812	0.85756	1	615210			25771	33494	21062	21089	28917	28917					0.09579362556928572
KPVAAASHRK	10	Unmodified	_KPVAAASHRK_					0	0	0		tr|A0A553SJD7|A0A553SJD7_NIACI3-hydroxyacyl-CoAdehydrogenase/enoyl-CoAhydratasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_16645PE=4SV=1	tr|A0A553SJD7|A0A553SJD7_NIACI3-hydroxyacyl-CoAdehydrogenase/enoyl-CoAhydratasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_16645PE=4SV=1	tr|A0A553SJD7|A0A553SJD7_NIACI3-hydroxyacyl-CoAdehydrogenase/enoyl-CoAhydratasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_16645PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	532.819807	1063.62506	-2.2308	-0.0011886	1.8541	0.0009879	-0.3767	-0.00020071	532.8206779115825	51.838	1.0401	49.025	48.7	49.74	-2.8129	0.0038063	0.00060502	NaN	32.812	50	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115300			25772	33494	21062	21089							0.09579362556928572
KPVAPSFGVL	10	Unmodified	_KPVAPSFGVL_					0	0	0		ENST00000520639.1_1_5:153873511-153874012:+|nuORF	ENST00000520639.1_1_5:153873511-153874012:+|nuORF	ENST00000520639.1_1_5:153873511-153874012:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.731689453125	2	507.80276	1013.59097	-0.53745	-0.00027292	-4.1309	-0.0020977	-4.6683	-0.0023706	507.80055091992284	66.564	0.78714	63.074	62.902	63.689	-3.4902					28	15	2	0	0	0	0.026956	1	4913	4913		34.173	9.9698	1	217870			25773	13110	21063	21090	28918	28918					0.08471521345325073
KPVFLFSF	8	Unmodified	_KPVFLFSF_					0	0	0			REV__ENST00000305883.5_1_2:10193335-10193581:+|nuORF	REV__ENST00000305883.5_1_2:10193335-10193581:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.2601623535156	2	492.781296	983.54804	-0.52517	-0.00025879	3.352	0.0016518	2.8268	0.001393	492.78275165132396	40.717	1.1491	37.763	37.368	38.517	-2.9541					32	21	2	0	0	0	0.028476	1	1851	1851		18.324	6.8134	1	97583	+		25774	24288	21064	21091	28919	28919					0.05560751287907806
KPVFLRREP	9	Unmodified	_KPVFLRREP_					0	0	0		ENST00000529121.2_1_11:61101092-61101212:+|nuORF	ENST00000529121.2_1_11:61101092-61101212:+|nuORF	ENST00000529121.2_1_11:61101092-61101212:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	571.3438720703125	2	571.345658	1140.67676	-1.0604	-0.00060586	-3.2487	-0.0018561	-4.3091	-0.002462	571.3437229435598	42.834	1.0492	39.827	39.434	40.483	-3.0074					47	19	3	0	0	0	0.33652	1	2021	2021		58.782	5.8453	1	329570			25775	13269	21065	21092	28920	28920					0.11205106250849894
KPVGFRPE	8	Unmodified	_KPVGFRPE_					0	0	0		ENST00000559779.1_1_15:52497253-52497520:+|nuORF	ENST00000559779.1_1_15:52497253-52497520:+|nuORF	ENST00000559779.1_1_15:52497253-52497520:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.2384948730469	2	465.263802	928.513051	-1.207	-0.00056159	0.90793	0.00042243	-0.2991	-0.00013916	465.2639892565844	43.961	1.4672	40.953	40.483	41.951	-3.0074					53	28	3	0	0	0	0.028476	1	2139	2139		40.573	16.37	1	295050			25776	13722	21066	21093	28921	28921					0.04593508479945285
KPVHKKPSL	9	Unmodified	_KPVHKKPSL_					0	0	0			REV__tr|A0A553SQ29|A0A553SQ29_NIACIPseudouridinesynthaseOS=NialliacirculansOX=1397GN=CEQ21_17460PE=3SV=1	REV__tr|A0A553SQ29|A0A553SQ29_NIACIPseudouridinesynthaseOS=NialliacirculansOX=1397GN=CEQ21_17460PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.2900390625	2	517.329476	1032.6444	-1.1314	-0.00058533	0.53192	0.00027518	-0.59952	-0.00031015	517.3297944171384	53.485	1.0235	50.277	49.995	51.018	-3.208					48	19	3	0	0	0	0.027462	1	3279	3279		34.173	16.808	1	221620	+		25777	30601	21067	21094	28922	28922					0.129383188478414
KPVHRRILF	9	Unmodified	_KPVHRRILF_					0	0	0		tr|A0A7D6VPS3|A0A7D6VPS3_9CLOTDNAgyrasesubunitAOS=ClostridiumintestinaleOX=36845GN=gyrAPE=3SV=1	tr|A0A7D6VPS3|A0A7D6VPS3_9CLOTDNAgyrasesubunitAOS=ClostridiumintestinaleOX=36845GN=gyrAPE=3SV=1	tr|A0A7D6VPS3|A0A7D6VPS3_9CLOTDNAgyrasesubunitAOS=ClostridiumintestinaleOX=36845GN=gyrAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.3084716796875	2	583.369467	1164.72438	-0.37867	-0.0002209	3.9258	0.0022902	3.5472	0.0020693	583.3716533264386	22.246	0.19553	22.246	22.185	22.381	0					6	4	2	0	0	0	0.027462	1	194	194		7.1934	0	1	11742			25778	34792	21068	21095	28923	28923					0.14860805241687558
KPVIPAAVL	9	Unmodified	_KPVIPAAVL_					0	0	0		ENSG00000157557|ENST00000360938|ETS2;ETS2|p.G356C|1|0.81|ENSG00000157557|chr21:38819757-38819757|G/T|missense_variant	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	454.3031005859375	2	454.302396	906.590239	0.722	0.00032801	-0.96632	-0.000439	-0.24432	-0.000111	454.301800088698	98.136	1.5847	95.758	95.47	97.054	-2.3786					59	30	3	0	0	0	0.53957	1	8718	8718		38.806	0	1	209630			25779	5900	21069	21096	28924	28924					0.1332072669625859
KPVIPAAVL	9	Unmodified	_KPVIPAAVL_					0	0	0		ENSG00000157557|ENST00000360938|ETS2;ETS2|p.G356C|1|0.81|ENSG00000157557|chr21:38819757-38819757|G/T|missense_variant	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	454.302396	906.590239	1.8263	0.00082967	-1.8575	-0.00084385	-0.0312	-1.4174E-05	454.3013988160758	96.662	1.3294	95.703	95.431	96.76	-0.95857	-0.050709	-0.00085909	NaN	38.806	59	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186140			25780	5900	21069	21096							0.1332072669625859
KPVIPAAVL	9	Unmodified	_KPVIPAAVL_					0	0	0		ENSG00000157557|ENST00000360938|ETS2;ETS2|p.G356C|1|0.81|ENSG00000157557|chr21:38819757-38819757|G/T|missense_variant	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	454.302396	906.590239	-0.45418	-0.00020633	0.25066	0.00011387	-0.20352	-9.2461E-05	454.3023611611548	97.56	1.4166	95.8	95.465	96.882	-1.7595	0.046517	0.0010564	NaN	38.806	61	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230830			25781	5900	21069	21096							0.1332072669625859
KPVIVPLIRL	10	Unmodified	_KPVIVPLIRL_					0	0	0			REV__ENST00000487002.1_1_1:155279413-155279551:+|nuORF	REV__ENST00000487002.1_1_1:155279413-155279551:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.8375244140625	2	574.399902	1146.78525	1.3665	0.00078493	-1.0701	-0.00061466	0.29643	0.00017027	574.8987838680615	81.779	0.32236	81.779	81.572	81.895	0					12	7	3	0	0	0	0.027284	1	8428	8428		9.7057	0	1	218400	+		25782	26595	21070	21097	28925	28925					0.21772897501250554
KPVKKVNTPK	10	Unmodified	_KPVKKVNTPK_					0	0	0			REV__ENSG00000196350|ENST00000601693|ZNF729	REV__ENSG00000196350|ENST00000601693|ZNF729	MULTI-MSMS	OvCa9_classI_Rep2	2	569.8695068359375	2	569.868966	1137.72338	1.4908	0.00084956	-1.3607	-0.0007754	0.13013	7.416E-05	569.8680060004389	27.967	1.4627	25.257	24.994	26.456	-2.7097					48	31	3	0	0	0	0.87331	1	550	550		9.7057	0.52274	1	71415	+		25783	22814	21071	21098	28926	28926					0.1600254608213163
KPVKPHSSF	9	Unmodified	_KPVKPHSSF_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	OvCa9_classI_Rep2	2	513.7900390625	2	513.790184	1025.56581	-1.1871	-0.00060992	0.94498	0.00048552	-0.24211	-0.00012439	513.791082037333	33.841	0.98759	31.131	30.972	31.959	-2.7097					51	19	5	0	0	0	0.5811	1	1255	1255		34.173	6.2903	1	165300			25784	3261	21072	21099	28927	28927					0.05405466542742943
KPVKPHSSF	9	Unmodified	_KPVKPHSSF_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.789794921875	2	513.790184	1025.56581	0.50225	0.00025805	-0.19654	-0.00010098	0.30572	0.00015707	513.7899765240271	32.531	1.3336	29.836	29.515	30.848	-2.6954					79	29	4	0	0	0	0.16562	6	788	766;776;788;801;813;845		82.241	21.269	1	161300			25785	3261	21072	21099	28928;28929;28930;28931;28932;28933	28930					0.05405466542742943
KPVKPHSSF	9	Unmodified	_KPVKPHSSF_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	513.790184	1025.56581	0.63777	0.00032768	-0.39865	-0.00020482	0.23912	0.00012286	513.7901893326385	34.316	0.69967	31.528	31.399	32.099	-2.7881	0.1987	-0.00083727	NaN	34.173	15	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8631.5			25786	3261	21072	21099							0.05405466542742943
KPVKYQLGF	9	Unmodified	_KPVKYQLGF_					0	0	0		ENSG00000196417|ENST00000396408|ZNF765;ZNF765|p.S167Lfs*27|1|0.07|ENSG00000196417|chr19:53408053-53408065|GTCTATCCACGAT/-|frameshift_variant	ENSG00000196417|ENST00000396408|ZNF765	ENSG00000196417|ENST00000396408|ZNF765	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.8623046875	2	540.316035	1078.61752	-1.0195	-0.00055083	-3.4318	-0.0018543	-4.4513	-0.0024051	540.3140144116176	77.333	1.1183	74.516	74.145	75.263	-2.8165					56	22	3	0	0	0	0.027462	1	6136	6136		16.473	0	1	359610			25787	8605	21073	21100	28934	28934					0.08135210236650892
KPVLAPFPP	9	Unmodified	_KPVLAPFPP_					0	0	0			REV__nc|ENSG00000183530|Q5THK1-2|PRR14L	REV__nc|ENSG00000183530|Q5THK1-2|PRR14L	MULTI-SECPEP	OvCa9_classI_Rep3	3	484.28240966796875	2	483.294571	964.574589	-1.2188	-0.00058903	-2.9862	-0.0014432	-4.205	-0.0020323	483.29294512111153	85.376	1.4886	83.156	82.598	84.087	-2.2204					70	29	3	0	0	0	0.027462	1	5084	5084		19.36	7.1531	1	397270	+		25788	22367	21074	21101	28935	28935					0.09088440179232293
KPVLDIPHL	9	Unmodified	_KPVLDIPHL_					0	0	0		nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2;ENST00000424981.1_1_20:20616022-20621447:-|nuORF	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	MULTI-MSMS	OvCa9_classI_Rep3	3	516.3157958984375	2	516.316035	1030.61752	0.13924	7.1892E-05	-0.39337	-0.0002031	-0.25413	-0.00013121	516.3156185467874	115.81	0.88774	114.77	114.45	115.34	-1.0414					47	17	3	0	0	0	0.33652	1	8630	8630		58.782	7.4465	1	119080			25789	8478	21075	21102	28936	28936					0.10343210236646883
KPVLDIPHL	9	Unmodified	_KPVLDIPHL_					0	0	0		nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2;ENST00000424981.1_1_20:20616022-20621447:-|nuORF	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.315673828125	2	516.316035	1030.61752	-0.12697	-6.5557E-05	-0.20276	-0.00010469	-0.32973	-0.00017025	516.3156944800825	116.08	1.1553	114.72	114.3	115.46	-1.3645					52	22	3	0	0	0	0.50149	1	10826	10826		42.396	0	1	146310			25790	8478	21075	21102	28937	28937					0.10343210236646883
KPVLDIPHL	9	Unmodified	_KPVLDIPHL_					0	0	0		nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2;ENST00000424981.1_1_20:20616022-20621447:-|nuORF	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	516.316035	1030.61752	-0.13711	-7.079E-05	0.13726	7.087E-05	0.00015623	8.0666E-08	516.3159564257851	114.95	1.1352	114.83	114.26	115.39	-0.11777	0.059041	0.00022916	NaN	58.782	46	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118520			25791	8478	21075	21102							0.10343210236646883
KPVLLMIL	8	Unmodified	_KPVLLMIL_					0	0	0		tr|A0A7D6ZZ84|A0A7D6ZZ84_9CLOT2,3-bisphosphoglycerate-independentphosphoglyceratemutaseOS=ClostridiumintestinaleOX=36845GN=gpmIPE=3SV=1	tr|A0A7D6ZZ84|A0A7D6ZZ84_9CLOT2,3-bisphosphoglycerate-independentphosphoglyceratemutaseOS=ClostridiumintestinaleOX=36845GN=gpmIPE=3SV=1	tr|A0A7D6ZZ84|A0A7D6ZZ84_9CLOT2,3-bisphosphoglycerate-independentphosphoglyceratemutaseOS=ClostridiumintestinaleOX=36845GN=gpmIPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.79364013671875	2	463.808999	925.603446	-1.3003	-0.0006031	3.1334	0.0014533	1.8331	0.00085021	463.8124040875557	55.49	0.25185	52.195	52.008	52.26	-3.2944					6	4	2	0	0	0	0.028476	1	3482	3482		29.842	0	1	6735			25792	35949	21076	21103	28938	28938					0.13766841484005
KPVNRISL	8	Unmodified	_KPVNRISL_					0	0	0		ENSG00000102699|ENST00000381989|PARP4;PARP4|p.Y1344Afs*5|1|0.08|ENSG00000102699|chr13:24435111-24435112|-/GC|frameshift_variant	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	OvCa9_classI_Rep2	2	463.79327392578125	2	463.792727	925.5709	-1.1345	-0.00052618	0.86769	0.00040243	-0.26683	-0.00012375	463.7931351732129	55.008	1.9913	52.194	51.125	53.116	-2.8139					104	39	4	0	0	0	0.40148	9	3807	3780;3786;3791;3797;3803;3807;3813;3820;3832		87.754	22.92	1	1215200			25793	2249	21077	21104	28939;28940;28941;28942;28943;28944;28945;28946;28947	28944					0.1051377040537318
KPVNRISL	8	Unmodified	_KPVNRISL_					0	0	0		ENSG00000102699|ENST00000381989|PARP4;PARP4|p.Y1344Afs*5|1|0.08|ENSG00000102699|chr13:24435111-24435112|-/GC|frameshift_variant	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.79376220703125	2	463.792727	925.5709	-1.1937	-0.00055365	0.4259	0.00019753	-0.76784	-0.00035612	463.79306876032103	55.435	1.8299	52.14	51.341	53.171	-3.2944					91	35	4	0	0	0	0.38806	4	3518	3493;3505;3518;3531		90.37	19.074	1	2918300			25794	2249	21077	21104	28948;28949;28950;28951	28950					0.1051377040537318
KPVPKKSQ	8	Unmodified	_KPVPKKSQ_					0	0	0		ENSG00000147082|ENST00000376042|CCNB3;nc|ENSG00000147082|Q8WWL7-3|CCNB3;nc|ENSG00000147082|Q8WWL7-2|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	MULTI-MSMS	OvCa9_classI_Rep2	2	456.2877502441406	2	456.287277	910.560001	4.1276	0.0018834	-4.1915	-0.0019125	-0.063884	-2.915E-05	456.2852328717181	26.379	0.62901	23.669	23.468	24.097	-2.7097					27	15	2	0	0	0	0.75241	1	372	372		25.45	4.9683	1	26563			25795	5329	21078	21105	28952	28952					0.10114368031088361
KPVRAIVTR	9	Unmodified	_KPVRAIVTR_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.8080444335938	2	520.340375	1038.6662	-1.2297	-0.00063987	0.94214	0.00049023	-0.28758	-0.00014964	520.3406708142231	37.508	0.41622	37.508	37.344	37.761	0					18	8	3	0	0	0	0.027462	1	2050	2050		24.203	15.509	1	160260	+		25796	17073	21079	21106	28953	28953					0.14841123596397665
KPVRPLFAH	9	Unmodified	_KPVRPLFAH_					0	0	0			REV__ENSG00000204767|ENST00000377365|INSYN2B	REV__ENSG00000204767|ENST00000377365|INSYN2B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.3353881835938	2	532.821818	1063.62908	-2.0733	-0.0011047	-2.0795	-0.001108	-4.1528	-0.0022127	532.8205755036931	44.088	0.90291	41.081	40.842	41.745	-3.0074					37	17	3	0	0	0	0.027462	1	2230	2230		38.806	8.3025	1	109620	+		25797	23185	21080	21107	28954	28954					0.09981452050647022
KPVRPLFAH	9	Unmodified	_KPVRPLFAH_					0	0	0			REV__ENSG00000204767|ENST00000377365|INSYN2B	REV__ENSG00000204767|ENST00000377365|INSYN2B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	532.821818	1063.62908	-0.65628	-0.00034968	-3.224	-0.0017178	-3.8802	-0.0020675	532.8201973822156	44.01	1.1439	41.301	40.955	42.099	-2.7097	0.17084	-0.0010276	NaN	30.504	42	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46773	+		25798	23185	21080	21107							0.09981452050647022
KPVRRNHSL	9	Unmodified	_KPVRRNHSL_					0	0	0			REV__ENSG00000204217|ENST00000374580|BMPR2	REV__ENSG00000204217|ENST00000374580|BMPR2	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8350830078125	2	553.830706	1105.64686	1.4061	0.00077877	-2.5843	-0.0014313	-1.1781	-0.00065248	553.8291816775361	139.45	3.0735	137.95	136.76	139.84	-1.4952					150	61	3	0	0	0	0.68424	1	13504	13504		21.96	1.9631	1	110800	+		25799	23132	21081	21108	28955	28955					0.09826167305527633
KPVSVAISL	9	Unmodified	_KPVSVAISL_					0	0	0		nc|ENSG00000126391|Q9BZ67-2|FRMD8;nc|ENSG00000126391|Q9BZ67-3|FRMD8;ENSG00000126391|ENST00000317568|FRMD8	nc|ENSG00000126391|Q9BZ67-2|FRMD8	nc|ENSG00000126391|Q9BZ67-2|FRMD8	MULTI-MSMS	OvCa99_classI_Rep5	1	457.2906799316406	2	457.289485	912.564418	0.99148	0.00045339	1.428	0.000653	2.4195	0.0011064	457.28999347617025	141.89	2.9183	141.89	141.44	144.35	0					112	58	3	0	0	0	0.3076	1	16576	16576		62.107	1.1355	1	466050			25800	3779	21082	21109	28956	28956					0.10463832454001931
KPVVISGKKI	10	Unmodified	_KPVVISGKKI_					0	0	0		tr|A0A7D6VZB4|A0A7D6VZB4_9CLOTHDODdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18985PE=4SV=1	tr|A0A7D6VZB4|A0A7D6VZB4_9CLOTHDODdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18985PE=4SV=1	tr|A0A7D6VZB4|A0A7D6VZB4_9CLOTHDODdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18985PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.8480834960938	2	534.860609	1067.70667	-1.3511	-0.00072265	0.52344	0.00027997	-0.82767	-0.00044269	534.860786671422	46.599	1.2797	43.526	43.189	44.468	-3.0724					60	24	4	0	0	0	0.026523	1	2452	2452		44.377	0	1	214390			25801	35356	21083	21110	28957	28957					0.17552045196180188
KPVYPGQTL	9	Unmodified	_KPVYPGQTL_					0	0	0		ENST00000507353.1_1_5:118861592-118865690:+|nuORF;ENST00000442060.7_1_5:118860916-118866997:+|nuORF;ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4	ENST00000507353.1_1_5:118861592-118865690:+|nuORF	ENST00000507353.1_1_5:118861592-118865690:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	501.7835693359375	2	501.784567	1001.55458	-1.7608	-0.00088353	-1.4225	-0.00071381	-3.1833	-0.0015973	501.78362247721066	68.033	2.2324	65.372	64.743	66.975	-2.661					87	44	4	0	0	0	0.1944	2	5338	5334;5338		77.318	18.292	1	470920			25802	4239	21084	21111	28958;28959	28959					0.053866444486288856
KPVYPGQTL	9	Unmodified	_KPVYPGQTL_					0	0	0		ENST00000507353.1_1_5:118861592-118865690:+|nuORF;ENST00000442060.7_1_5:118860916-118866997:+|nuORF;ENST00000515235.6_1_5:118829562-118961685:+|nuORF;nc|ENSG00000133835|P51659-3|HSD17B4;ENSG00000133835|ENST00000510025|HSD17B4;nc|ENSG00000133835|P51659-2|HSD17B4	ENST00000507353.1_1_5:118861592-118865690:+|nuORF	ENST00000507353.1_1_5:118861592-118865690:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.7856140136719	2	501.784567	1001.55458	-0.43477	-0.00021816	-1.358	-0.00068145	-1.7928	-0.00089961	501.7842640966431	68.796	1.3718	65.306	64.916	66.288	-3.4902					36	27	2	0	0	0	0.045281	4	5119	5110;5119;5131;5143		122.18	34.599	1	2072800			25803	4239	21084	21111	28960;28961;28962;28963	28961					0.053866444486288856
KPWIKDIREQ	10	Unmodified	_KPWIKDIREQ_					0	0	0			REV__nc|ENSG00000157087|Q01814-4|ATP2B2	REV__nc|ENSG00000157087|Q01814-4|ATP2B2	MULTI-MSMS	OvCa99_classI_Rep5	1	438.25335693359375	3	438.250583	1311.72992	0.73159	0.00032062	4.3116	0.0018896	5.0432	0.0022102	438.2525142604776	42.876	1.1114	42.876	42.583	43.694	0					71	25	5	0	0	0	0.58667	1	2782	2782		43.651	7.3331	1	4734000	+		25804	20511	21085	21112	28964	28964					0.0865243924281458
KPYLKSKN	8	Unmodified	_KPYLKSKN_					0	0	0		ENST00000481732.5_1_2:113514720-113522175:-|nuORF;ENSG00000169607|ENST00000302450|CKAP2L	ENST00000481732.5_1_2:113514720-113522175:-|nuORF	ENST00000481732.5_1_2:113514720-113522175:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.2934265136719	2	489.292559	976.570566	0.42184	0.00020641	-1.1367	-0.00055619	-0.71488	-0.00034979	489.29193832315656	60.999	1.7478	57.569	57.144	58.891	-3.43					60	35	2	0	0	0	0.71267	1	4154	4154		40.778	0.20554	1	1072400			25805	7025	21086	21113	28965	28965					0.08134350685509162
KPYPSKKEI	9	Unmodified	_KPYPSKKEI_					0	0	0		ENSG00000101544|ENST00000262198|ADNP2	ENSG00000101544|ENST00000262198|ADNP2	ENSG00000101544|ENST00000262198|ADNP2	MULTI-MSMS	OvCa9_classI_Rep2	2	545.316162109375	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.67509	1	14297	14297		23.042	1.0826	1	202430			25806	2185	21087	21114	28966	28966					0.08222889028479585
KPYSLTLRN	9	Unmodified	_KPYSLTLRN_					0	0	0			REV__tr|A0A553SP59|A0A553SP59_NIACIOrotatephosphoribosyltransferaseOS=NialliacirculansOX=1397GN=pyrEPE=3SV=1	REV__tr|A0A553SP59|A0A553SP59_NIACIOrotatephosphoribosyltransferaseOS=NialliacirculansOX=1397GN=pyrEPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.3212280273438	2	546.314023	1090.61349	-1.2974	-0.00070878	2.0199	0.0011035	0.72255	0.00039474	546.817140589643	69.974	0.4537	69.974	69.756	70.21	0					18	10	2	0	0	0	0.027462	1	6659	6659		42.396	3.59	1	803930	+		25807	30498	21088	21115	28967	28967					0.07181120742939129
KPYVDGKGREL	11	Unmodified	_KPYVDGKGREL_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	421.23590087890625	3	421.234822	1260.68264	-1.4546	-0.00061275	1.9862	0.00083666	0.53157	0.00022391	421.2356577330444	43.875	1.3617	40.867	40.589	41.951	-3.0074					71	26	3	0	0	0	0.15372	1	2133	2133		86.189	19.269	1	663870			25808	8736	21089	21116	28968	28968					0.06272159971854308
KPYVDGKGREL	11	Unmodified	_KPYVDGKGREL_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	421.234822	1260.68264	0.72256	0.00030437	-0.43569	-0.00018353	0.28687	0.00012084	421.23452511857187	43.531	1.2423	40.821	40.41	41.653	-2.7097	-0.023015	-0.0019419	NaN	86.189	58	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167130			25809	8736	21089	21116							0.06272159971854308
KPYVVFWI	8	Unmodified	_KPYVVFWI_					0	0	0			REV__tr|A0A7D6ZH57|A0A7D6ZH57_9CLOTYcxBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01570PE=4SV=1	REV__tr|A0A7D6ZH57|A0A7D6ZH57_9CLOTYcxBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01570PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2861328125	2	526.302396	1050.59024	1.4073	0.00074064	-0.86746	-0.00045655	0.53979	0.00028409	526.3014289830203	98.158	0.59471	98.158	97.912	98.506	0					24	13	3	0	0	0	0.028476	1	10838	10838		29.842	27.123	1	472820	+		25810	32017	21090	21117	28969	28969					0.06696726696281985
KQAGVPEFLL	10	Unmodified	_KQAGVPEFLL_					0	0	0		tr|A0A553STP6|A0A553STP6_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05500PE=4SV=1	tr|A0A553STP6|A0A553STP6_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05500PE=4SV=1	tr|A0A553STP6|A0A553STP6_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05500PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.288818359375	2	551.318774	1100.623	-0.49572	-0.0002733	-3.7536	-0.0020694	-4.2493	-0.0023427	551.3164777531559	40.676	0.71583	40.676	40.479	41.195	0					17	15	2	0	0	0	0.026956	1	2530	2530		34.173	8.5985	1	100810			25811	34516	21091	21118	28970	28970					0.07670889028463534
KQAKQVKEL	9	Unmodified	_KQAKQVKEL_					0	0	0		tr|A0A553SI95|A0A553SI95_NIACIC5apeptidaseOS=NialliacirculansOX=1397GN=CEQ21_14480PE=3SV=1	tr|A0A553SI95|A0A553SI95_NIACIC5apeptidaseOS=NialliacirculansOX=1397GN=CEQ21_14480PE=3SV=1	tr|A0A553SI95|A0A553SI95_NIACIC5apeptidaseOS=NialliacirculansOX=1397GN=CEQ21_14480PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.8097534179688	2	536.329673	1070.64479	-0.35211	-0.00018885	-3.7892	-0.0020323	-4.1413	-0.0022211	536.3292089031295	54.151	0.77333	54.151	53.774	54.547	0					28	18	2	0	0	0	0.027462	1	4315	4315		42.396	5.9494	1	217170			25812	33357	21092	21119	28971	28971					0.11229693777045213
KQALKYFNL	9	Unmodified	_KQALKYFNL_					0	0	0		ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	ENSG00000071537|ENST00000336735|SEL1L	MULTI-MSMS	OvCa99_classI_Rep5	1	562.8281860351562	2	562.826766	1123.63898	2.5982	0.0014623	-0.015438	-8.6888E-06	2.5828	0.0014537	562.8264310259613	82.291	1.0992	82.291	81.979	83.078	0					76	25	7	0	0	0	0.27001	1	8537	8537		66.429	11.653	1	6963000			25813	1451	21093	21120	28972	28972					0.08210595265359188
KQAMKPLR	8	Unmodified	_KQAMKPLR_					0	0	0		ENST00000221859.8_1_19:36605839-36605938:-|nuORF	ENST00000221859.8_1_19:36605839-36605938:-|nuORF	ENST00000221859.8_1_19:36605839-36605938:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	486.7961730957031	2	486.294579	970.574605	-0.35425	-0.00017227	2.2585	0.0010983	1.9043	0.00092603	486.2979447832471	56.205	0.61465	56.205	55.845	56.459	0					39	14	4	0	0	0	0.7043	1	4649	4649		42.474	0.078325	1	975460			25814	9695	21094	21121	28973	28973					0.08814116907569769
KQAQGTGH	8	Unmodified	_KQAQGTGH_					0	0	0		nc|ENSG00000095383|Q9BYX2-3|TBC1D2;nc|ENSG00000095383|Q9BYX2-2|TBC1D2;ENSG00000095383|ENST00000465784|TBC1D2;nc|ENSG00000095383|Q9BYX2-4|TBC1D2;TBC1D2|p.Q313Lfs*43|1|0.05|ENSG00000095383|chr9:98228992-98228993|-/ATCA|frameshift_variant;TBC1D2|p.Q313Hfs*44|1|0.06|ENSG00000095383|chr9:98228991-98228992|-/GCCCAGA|frameshift_variant	nc|ENSG00000095383|Q9BYX2-3|TBC1D2	nc|ENSG00000095383|Q9BYX2-3|TBC1D2	MULTI-SECPEP	OvCa99_classI_Rep5	1	413.49029541015625	2	413.711934	825.409314	0.36662	0.00015168	2.0668	0.00085506	2.4334	0.0010067	413.7141069703359	38.652	0.54265	38.652	38.207	38.75	0					16	11	2	0	0	0	0.028476	1	2174	2174		25.45	4.9683	1	59190			25815	1927	21095	21122	28974	28974					-0.01037398627715902
KQAQIPLAA	9	Unmodified	_KQAQIPLAA_					0	0	0		ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D;ENST00000514561.5_1_4:119681750-119745902:-|nuORF;ENST00000509818.5_1_4:119687763-119745832:-|nuORF	ENSG00000150961|ENST00000280551|SEC24D;ENST00000509818.5_1_4:119687763-119745832:-|nuORF	ENSG00000150961|ENST00000280551|SEC24D	MULTI-MSMS	OvCa99_classI_Rep5	1	470.2862548828125	2	470.284734	938.554916	-0.33497	-0.00015753	-0.18366	-8.637E-05	-0.51862	-0.0002439	470.2844679347185	67.827	1.1927	67.827	67.371	68.564	0					65	29	4	0	0	0	0.14739	1	6371	6371		85.359	22.053	1	4354800			25816	5524;12966	21096	21123	28975	28975					0.08318064168463479
KQARELIKV	9	Unmodified	_KQARELIKV_					0	0	0		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000216019.11_1_22:38881942-38884127:-|nuORF;ENST00000431312.2_1_22:38881942-38884127:-|nuORF	nc|ENSG00000100201|Q92841-1|DDX17	nc|ENSG00000100201|Q92841-1|DDX17	MULTI-MSMS	OvCa99_classI_Rep5	1	542.8453979492188	2	542.84549	1083.67643	-1.0565	-0.0005735	-0.25622	-0.00013909	-1.3127	-0.00071259	542.8452437487728	44.149	0.70917	44.149	43.909	44.618	0					44	15	4	0	0	0	0.1944	1	2959	2959		77.318	9.8239	1	2486800			25817	2023	21097	21124	28976	28976					0.1379368653099391
KQARSLQAVP	10	Unmodified	_KQARSLQAVP_					0	0	0		ENSG00000184363|ENST00000331563|PKP3;nc|ENSG00000184363|Q9Y446-2|PKP3	ENSG00000184363|ENST00000331563|PKP3	ENSG00000184363|ENST00000331563|PKP3	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.3236694335938	2	549.324922	1096.63529	0.69445	0.00038148	-1.3166	-0.00072326	-0.62217	-0.00034178	549.3241630662727	35.315	2.0009	32.466	31.936	33.937	-2.849					105	39	5	0	0	0	0.70152	1	1130	1130		30.318	1.1477	1	1387800			25818	8151	21098	21125	28977	28977					0.0908392549151813
KQCCFLTVV	9	Unmodified	_KQCCFLTVV_					0	0	0			REV__ENSG00000180772|ENST00000371906|AGTR2	REV__ENSG00000180772|ENST00000371906|AGTR2	MULTI-MSMS	OvCa99_classI_Rep5	1	520.7685546875	2	520.767006	1039.51946	0.016547	8.6173E-06	-0.80559	-0.00041952	-0.78904	-0.00041091	520.7665795556696	73.986	3.2446	73.986	73.678	76.922	0					206	81	5	0	0	0	0.35444	1	7445	7445		56.721	6.6965	1	128020000	+		25819	22192	21099	21126	28978	28978					0.001279423247979139
KQDELWVTF	9	Unmodified	_KQDELWVTF_					0	0	0			REV__ENST00000427559.1_1_2:112698001-112698598:-|nuORF	REV__ENST00000427559.1_1_2:112698001-112698598:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	583.296875	2	583.298039	1164.58152	1.7419	0.0010161	-2.9405	-0.0017152	-1.1986	-0.00069916	583.2962852953101	74.922	0.53282	74.922	74.635	75.168	0					42	12	4	0	0	0	0.14855	1	7426	7426		85.161	1.5138	1	5049300	+		25820	25684	21100	21127	28979	28979					0.005817082691237374
KQDELWVTF	9	Unmodified	_KQDELWVTF_					0	0	0			REV__ENST00000427559.1_1_2:112698001-112698598:-|nuORF	REV__ENST00000427559.1_1_2:112698001-112698598:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	583.298039	1164.58152	1.7419	0.0010161	-2.9405	-0.0017152	-1.1986	-0.00069916	583.2962852953101	74.922	0.53282	74.922	74.635	75.168	0	-0.12395	-0.00056361	NaN	85.161	42	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5049300	+		25821	25684	21100	21127							0.005817082691237374
KQDELWVTF	9	Unmodified	_KQDELWVTF_					0	0	0			REV__ENST00000427559.1_1_2:112698001-112698598:-|nuORF	REV__ENST00000427559.1_1_2:112698001-112698598:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	583.298039	1164.58152	-0.65831	-0.00038399	1.0283	0.0005998	0.36998	0.00021581	583.2968469042003	76.989	1.3019	75.199	74.582	75.884	-1.7894	0.15392	0.0040664	NaN	85.161	55	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70595	+		25822	25684	21100	21127							0.005817082691237374
KQDELWVTF	9	Unmodified	_KQDELWVTF_					0	0	0			REV__ENST00000427559.1_1_2:112698001-112698598:-|nuORF	REV__ENST00000427559.1_1_2:112698001-112698598:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	583.298039	1164.58152	-0.89319	-0.000521	-2.3295	-0.0013588	-3.2226	-0.0018798	583.2966886956991	77.832	0.96652	75.015	74.729	75.696	-2.8165	-0.029971	0.00014928	NaN	85.161	32	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	281220	+		25823	25684	21100	21127							0.005817082691237374
KQDETQTKI	9	Unmodified	_KQDETQTKI_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	OvCa99_classI_Rep5	1	545.7902221679688	2	545.790578	1089.5666	-0.16024	-8.7456E-05	-0.69156	-0.00037744	-0.85179	-0.0004649	545.7902430296992	30.656	0.83107	30.656	30.433	31.264	0					59	16	6	0	0	0	0.0079674	2	1204	1184;1204		199.89	41.817	1	8708400			25824	1131	21101	21128	28980;28981	28981					0.0254021640114388
KQDHISGKG	9	Unmodified	_KQDHISGKG_					0	0	0			REV__ENSG00000198300|ENST00000326441|PEG3	REV__ENSG00000198300|ENST00000326441|PEG3	MULTI-MSMS	OvCa99_classI_Rep5	1	485.2590637207031	2	485.259248	968.503943	-0.84983	-0.00041239	0.43246	0.00020985	-0.41737	-0.00020253	485.25944349984024	42.006	0.52002	42.006	41.766	42.286	0					31	11	4	0	0	0	0.37135	1	2665	2665		54.776	1.4249	1	935470	+		25825	23008	21102	21129	28982	28982					0.01843115123631378
KQDHISGKG	9	Unmodified	_KQDHISGKG_					0	0	0			REV__ENSG00000198300|ENST00000326441|PEG3	REV__ENSG00000198300|ENST00000326441|PEG3	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	485.259248	968.503943	-0.84983	-0.00041239	0.43246	0.00020985	-0.41737	-0.00020253	485.25944349984024	42.006	0.52002	42.006	41.766	42.286	0	0	0	NaN	54.776	31	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	935470	+		25826	23008	21102	21129							0.01843115123631378
KQDLEQQW	8	Unmodified	_KQDLEQQW_					0	0	0		GOLGA1|p.L630Wfs*9|1|0.05|ENSG00000136935|chr9:124888270-124888271|-/CGCAGGACCA|frameshift_variant	GOLGA1|p.L630Wfs*9|1|0.05|ENSG00000136935|chr9:124888270-124888271|-/CGCAGGACCA|frameshift_variant	GOLGA1|p.L630Wfs*9|1|0.05|ENSG00000136935|chr9:124888270-124888271|-/CGCAGGACCA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.8125	2	537.764363	1073.51417	-0.80418	-0.00043246	3.1016	0.0016679	2.2975	0.0012355	537.7661579316404	28.295	0.29907	28.295	28.091	28.39	0					6	5	2	0	0	0	0.028476	1	910	910		102.77	17.613	1	13988			25827	14344	21103	21130	28983	28983					-0.019643219418185254
KQDSMDLKV	9	Unmodified	_KQDSMDLKV_					0	0	0		GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant;ENSG00000131459|ENST00000253778|GFPT2;GFPT2|p.K136Qfs*18|1|0.12|ENSG00000131459|chr5:180330828-180330829|-/TG|frameshift_variant	GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant	GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	532.276611328125	2	532.276249	1062.53795	-0.33031	-0.00017582	0.51098	0.00027198	0.18067	9.6166E-05	532.2762956006487	56.027	0.49604	56.027	55.804	56.3	0					28	11	4	0	0	0	0.030867	1	4621	4621		134.77	8.523	1	3668700			25828	4066	21104	21131	28984	28984					0.00917775500352036
KQDSMDLKV	9	Unmodified	_KQDSMDLKV_					0	0	0		GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant;ENSG00000131459|ENST00000253778|GFPT2;GFPT2|p.K136Qfs*18|1|0.12|ENSG00000131459|chr5:180330828-180330829|-/TG|frameshift_variant	GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant	GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	532.276249	1062.53795	-1.4238	-0.00075788	1.4323	0.00076237	0.0084364	4.4905E-06	532.2768594645229	58.597	2.3489	55.817	54.984	57.333	-2.7801	-0.06653	0.00052594	NaN	134.77	93	45	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190630			25829	4066	21104	21131							0.00917775500352036
KQEAMKREYEI	11	Unmodified	_KQEAMKREYEI_					0	0	0		tr|A0A7D6VNB1|A0A7D6VNB1_9CLOTGIY-YIGnucleasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18205PE=3SV=1	tr|A0A7D6VNB1|A0A7D6VNB1_9CLOTGIY-YIGnucleasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18205PE=3SV=1	tr|A0A7D6VNB1|A0A7D6VNB1_9CLOTGIY-YIGnucleasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18205PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.608154296875	3	475.57826	1423.71295	0.22648	0.00010771	1.4223	0.0006764	1.6487	0.0007841	475.5789537921002	80.838	0.25163	79.143	79.017	79.269	-1.6951					5	4	2	0	0	0	0.025818	1	6837	6837		23.378	0	1	13561			25830	34688	21105	21132	28985	28985					0.018041505747305564
KQEDGKNRSLS	11	Unmodified	_KQEDGKNRSLS_					0	0	0		ENST00000467622.2_1_12:110874278-110874939:-|nuORF	ENST00000467622.2_1_12:110874278-110874939:-|nuORF	ENST00000467622.2_1_12:110874278-110874939:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	632.300048828125	2	631.32839	1260.64223	0.18635	0.00011765	3.3408	0.0021091	3.5271	0.0022268	631.3307469964753	51.413	0.5495	51.413	51.078	51.627	0					16	12	2	0	0	0	0.025714	1	3970	3970		38.754	17.916	1	153840			25831	12316	21106	21133	28986	28986					0.022331935814236203
KQEEARSRPLV	11	Unmodified	_KQEEARSRPLV_					0	0	0			REV__ENST00000485769.5_1_1:164528990-164529047:+|nuORF	REV__ENST00000485769.5_1_1:164528990-164529047:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	437.2609558105469	3	438.249242	1311.7259	-0.35612	-0.00015607	-3.8494	-0.001687	-4.2055	-0.0018431	438.24762171962635	50.662	0.49347	47.868	47.531	48.024	-2.794					15	9	2	0	0	0	0.025445	1	3243	3243		42.338	0.91146	1	23738	+		25832	26569	21107	21134	28987	28987					0.08250349749141606
KQEEKFVGQ	9	Unmodified	_KQEEKFVGQ_					0	0	0		nc|ENSG00000117174|Q9NWK9-2|ZNHIT6;ENSG00000117174|ENST00000370574|ZNHIT6	nc|ENSG00000117174|Q9NWK9-2|ZNHIT6	nc|ENSG00000117174|Q9NWK9-2|ZNHIT6	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.7855834960938	2	546.787838	1091.56112	-1.2902	-0.00070546	-2.1031	-0.00115	-3.3933	-0.0018554	546.7866680087051	41.972	1.7543	38.992	38.388	40.142	-2.9804					103	30	5	0	0	0	0.40667	1	1909	1909		51.335	6.9583	1	751890			25833	3242	21108	21135	28988	28988					0.019005376093446102
KQEEKFVGQ	9	Unmodified	_KQEEKFVGQ_					0	0	0		nc|ENSG00000117174|Q9NWK9-2|ZNHIT6;ENSG00000117174|ENST00000370574|ZNHIT6	nc|ENSG00000117174|Q9NWK9-2|ZNHIT6	nc|ENSG00000117174|Q9NWK9-2|ZNHIT6	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	546.787838	1091.56112	0.94001	0.00051398	-3.7276	-0.0020382	-2.7876	-0.0015242	546.7855253614701	41.767	1.6768	39.057	38.684	40.361	-2.7097	0.032903	-0.001033	NaN	51.335	63	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129370			25834	3242	21108	21135							0.019005376093446102
KQEEYEAAIKK	11	Unmodified	_KQEEYEAAIKK_					0	0	0			REV__tr|A0A553SPI3|A0A553SPI3_NIACIPhosphoenolpyruvate-proteinphosphotransferaseOS=NialliacirculansOX=1397GN=ptsPPE=3SV=1	REV__tr|A0A553SPI3|A0A553SPI3_NIACIPhosphoenolpyruvate-proteinphosphotransferaseOS=NialliacirculansOX=1397GN=ptsPPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	446.2424621582031	3	446.241753	1335.70343	1.5961	0.00071226	-1.633	-0.0007287	-0.036847	-1.6443E-05	446.24100701459264	57.983	1.6668	55.191	54.773	56.44	-2.7921					91	32	5	0	0	0	0.34309	1	4165	4165		65.278	0	1	418310	+		25835	30538	21109	21136	28989	28989					0.04900705560839924
KQEEYEAAIKK	11	Unmodified	_KQEEYEAAIKK_					0	0	0			REV__tr|A0A553SPI3|A0A553SPI3_NIACIPhosphoenolpyruvate-proteinphosphotransferaseOS=NialliacirculansOX=1397GN=ptsPPE=3SV=1	REV__tr|A0A553SPI3|A0A553SPI3_NIACIPhosphoenolpyruvate-proteinphosphotransferaseOS=NialliacirculansOX=1397GN=ptsPPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	446.24224853515625	3	446.241753	1335.70343	0.073488	3.2794E-05	-0.037564	-1.6763E-05	0.035925	1.6031E-05	446.2417256988566	58.769	1.5942	55.377	54.802	56.396	-3.392					98	31	4	0	0	0	0.51772	1	3893	3893		52.167	7.5277	1	536790	+		25836	30538	21109	21136	28990	28990					0.04900705560839924
KQEEYEAAIKK	11	Unmodified	_KQEEYEAAIKK_					0	0	0			REV__tr|A0A553SPI3|A0A553SPI3_NIACIPhosphoenolpyruvate-proteinphosphotransferaseOS=NialliacirculansOX=1397GN=ptsPPE=3SV=1	REV__tr|A0A553SPI3|A0A553SPI3_NIACIPhosphoenolpyruvate-proteinphosphotransferaseOS=NialliacirculansOX=1397GN=ptsPPE=3SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		3	446.241753	1335.70343	0.073488	3.2794E-05	-0.037564	-1.6763E-05	0.035925	1.6031E-05	446.2417256988566	58.769	1.5942	55.377	54.802	56.396	-3.392	0.092789	0.0018763	NaN	65.278	98	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	536790	+		25837	30538	21109	21136							0.04900705560839924
KQEGNQISL	9	Unmodified	_KQEGNQISL_					0	0	0			REV__nc|ENSG00000175471|Q6DN14-5|MCTP1	REV__nc|ENSG00000175471|Q6DN14-5|MCTP1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.7735900878906	2	508.772188	1015.52982	2.2546	0.0011471	0.4045	0.0002058	2.6591	0.0013529	508.77221262996073	79.933	1.2954	79.933	79.276	80.571	0					65	31	4	0	0	0	0.094616	1	8177	8177		98.629	0	1	2723400	+		25838	21899	21110	21137	28991	28991					0.022679645752418764
KQEQKHLQPQ	10	Unmodified	_KQEQKHLQPQ_					0	0	0		ENSG00000260916|ENST00000442196|CCPG1;ENST00000310958.10_2_15:55648420-55648633:-|nuORF;nc|ENSG00000260916|Q9ULG6-3|CCPG1	ENSG00000260916|ENST00000442196|CCPG1	ENSG00000260916|ENST00000442196|CCPG1	MULTI-MSMS	OvCa9_classI_Rep4_	4	632.3452758789062	2	632.343843	1262.67313	-0.49398	-0.00031236	-0.68472	-0.00043298	-1.1787	-0.00074535	632.3433077508505	101.17	1.7454	98.901	98.652	100.4	-2.2665					71	34	3	0	0	0	0.50999	1	9063	9063		52.937	3.4952	1	245770			25839	9497	21111	21138	28992	28992					0.052303916863365885
KQEVALEAE	9	Unmodified	_KQEVALEAE_					0	0	0			REV__ENST00000481441.1_1_6:33164057-33166316:-|nuORF	REV__ENST00000481441.1_1_6:33164057-33166316:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	508.7659912109375	2	508.766571	1015.51859	-2.5431	-0.0012939	2.0709	0.0010536	-0.47219	-0.00024023	508.7675091980884	37.121	1.4274	34.411	33.942	35.37	-2.7097					85	28	4	0	0	0	0.10363	1	1665	1665		96.19	16.478	1	798860	+		25840	23135	21112	21139	28993	28993					0.011451424810843491
KQEWTPKP	8	Unmodified	_KQEWTPKP_					0	0	0		tr|A0A7D6VN02|A0A7D6VN02_9CLOTDihydroxy-aciddehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_15615PE=3SV=1	tr|A0A7D6VN02|A0A7D6VN02_9CLOTDihydroxy-aciddehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_15615PE=3SV=1	tr|A0A7D6VN02|A0A7D6VN02_9CLOTDihydroxy-aciddehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_15615PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3087158203125	2	507.274367	1012.53418	-0.41427	-0.00021015	-3.6848	-0.0018692	-4.099	-0.0020793	507.2725348367859	48.126	0.92051	45.018	44.736	45.657	-3.1077					41	17	3	0	0	0	0.028476	1	2648	2648		71.296	5.8303	1	75166			25841	34673	21113	21140	28994	28994					0.028414737888056152
KQEYSRYQRWR	11	Unmodified	_KQEYSRYQRWR_					0	0	0		ENSG00000174574|ENST00000432648|AKIRIN1;nc|ENSG00000174574|Q9H9L7-2|AKIRIN1	ENSG00000174574|ENST00000432648|AKIRIN1	ENSG00000174574|ENST00000432648|AKIRIN1	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.8106689453125	3	533.942812	1598.80661	0.047681	2.5459E-05	-3.899	-0.0020818	-3.8513	-0.0020564	533.940678617624	91.554	0.94942	90.318	89.954	90.904	-1.2355					34	17	3	0	0	0	0.026478	1	8134	8134		6.6596	0	1	64935			25842	7476	21114	21141	28995	28995					0.0311563079201278
KQFDKILEL	9	Unmodified	_KQFDKILEL_					0	0	0		ENSG00000184254|ENST00000329841|ALDH1A3	ENSG00000184254|ENST00000329841|ALDH1A3	ENSG00000184254|ENST00000329841|ALDH1A3	MULTI-MSMS	OvCa99_classI_Rep5	1	567.3338623046875	2	567.331882	1132.64921	1.8907	0.0010727	-1.9796	-0.0011231	-0.088848	-5.0406E-05	567.3321853755098	92.516	0.79472	92.516	92.216	93.011	0					55	18	4	0	0	0	0.075618	1	9979	9979		104.01	13.413	1	3876300			25843	8140	21115	21142	28996	28996					0.0881915819995811
KQFDKILELI	10	Unmodified	_KQFDKILELI_					0	0	0		ENSG00000184254|ENST00000329841|ALDH1A3	ENSG00000184254|ENST00000329841|ALDH1A3	ENSG00000184254|ENST00000329841|ALDH1A3	MULTI-MSMS	OvCa99_classI_Rep5	1	623.8766479492188	2	623.873914	1245.73327	1.3099	0.00081723	0.90608	0.00056528	2.216	0.0013825	623.8741917604166	119.02	0.56758	119.02	118.72	119.29	0					26	11	3	0	0	0	0.45822	1	13658	13658		60.118	8.5905	1	207900			25844	8140	21116	21143	28997	28997					0.12023689296847806
KQFEKQVEL	9	Unmodified	_KQFEKQVEL_					0	0	0		DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.F3496Wfs*92|1|0.14|ENSG00000197102|chr14:102034043-102034044|-/GACCTGGCAGCTGTCGAGGC|frameshift_variant;DYNC1H1|p.P2596Tfs*19|1|0.06|ENSG00000197102|chr14:102016936-102016937|-/A|frameshift_variant;DYNC1H1|p.E1316*|1|0.12|ENSG00000197102|chr14:102000128-102000129|-/C|frameshift_variant;DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	574.8207397460938	2	574.819138	1147.62372	-0.6534	-0.00037559	-1.62	-0.00093121	-2.2734	-0.0013068	574.8190584429813	55.442	0.61095	55.442	55.193	55.804	0					36	14	4	0	0	0	0.046778	1	4532	4532		120.87	25.053	1	1457300			25845	767;768	21117	21144	28998	28998					0.0558168367754206
KQFGAQANVI	10	Unmodified	_KQFGAQANVI_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	OvCa99_classI_Rep5	1	538.3005981445312	2	538.298373	1074.58219	-0.021968	-1.1825E-05	-0.19755	-0.00010634	-0.21952	-0.00011817	538.2981505519808	69.084	0.85808	69.084	68.774	69.632	0					31	20	2	0	0	0	0.48198	1	6545	6545		56.721	6.6965	1	2948500			25846	1464	21118	21145	28999	28999					0.047885477088584594
KQFGVAPFTI	10	Unmodified	_KQFGVAPFTI_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;COL6A3|p.T1393Cfs*9|1|0.09|ENSG00000163359|chr2:237371828-237371840|GCTCCCGGAAGGT/-|frameshift_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	554.3145141601562	2	554.313492	1106.61243	0.29235	0.00016205	1.3741	0.00076169	1.6665	0.00092375	554.3143259234861	114.4	2.7187	114.4	113.88	116.6	0					179	58	6	0	0	0	0.068739	4	13058	13035;13058;13082;13106		122.18	41.969	1	35652000			25847	6293	21119	21146	29000;29001;29002;29003	29001					0.0633890637402601
KQFISYKRS	9	Unmodified	_KQFISYKRS_					0	0	0			REV__ENST00000593409.5_1_19:16757215-16757275:-|nuORF	REV__ENST00000593409.5_1_19:16757215-16757275:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	578.8270263671875	2	578.827298	1155.64004	-0.5315	-0.00030764	-2.9965	-0.0017345	-3.528	-0.0020421	578.8254381308788	31.72	0.59286	29.011	28.838	29.431	-2.7097					24	11	3	0	0	0	0.68424	1	990	990		21.96	1.013	1	55417	+		25848	27964	21120	21147	29004	29004					0.06844809634276317
KQFKSPKIY	9	Unmodified	_KQFKSPKIY_					0	0	0			REV__ENST00000414296.2_1_7:29736649-29749689:+|nuORF	REV__ENST00000414296.2_1_7:29736649-29749689:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	569.8341064453125	2	569.834591	1137.65463	-0.75134	-0.00042814	-0.049233	-2.8055E-05	-0.80058	-0.0004562	569.8345397385756	99.869	5.0637	97.543	97.212	102.28	-2.3253					291	98	6	0	0	0	0.28934	1	9075	9075		64.207	1.2288	1	9449400	+		25849	25518	21121	21148	29005	29005					0.09130881782425604
KQFLMKVLI	9	Unmodified	_KQFLMKVLI_					0	0	0		nc|ENSG00000066027|Q15172-2|PPP2R5A;ENSG00000066027|ENST00000261461|PPP2R5A	nc|ENSG00000066027|Q15172-2|PPP2R5A	nc|ENSG00000066027|Q15172-2|PPP2R5A	MULTI-MSMS	OvCa99_classI_Rep5	1	560.3557739257812	2	560.351563	1118.68857	2.6273	0.0014722	0.010672	5.98E-06	2.638	0.0014782	560.3513544184773	100.22	0.71259	100.22	99.896	100.61	0					36	16	3	0	0	0	0.14998	1	11099	11099		84.916	17.954	1	2213100			25850	1340	21122	21149	29006	29006					0.133975869498272
KQFLVKVLI	9	Unmodified	_KQFLVKVLI_					0	0	0		nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E	nc|ENSG00000154001|Q16537-3|PPP2R5E	nc|ENSG00000154001|Q16537-3|PPP2R5E	MULTI-MSMS	OvCa99_classI_Rep5	1	544.3663330078125	2	544.365527	1086.7165	1.3732	0.0007475	0.20487	0.00011152	1.578	0.00085903	544.3654341231608	98.272	1.0823	98.272	97.954	99.036	0					66	25	4	0	0	0	0.12365	1	10805	10805		90.777	23.283	1	2415000			25851	5706	21123	21150	29007	29007					0.1766123320155657
KQFPEALFA	9	Unmodified	_KQFPEALFA_					0	0	0			REV__ENST00000263398.10_1_11:35253510-35253573:+|nuORF	REV__ENST00000263398.10_1_11:35253510-35253573:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.8076171875	2	525.784567	1049.55458	0.077928	4.0973E-05	1.6459	0.00086541	1.7239	0.00090638	525.7848659339505	67.28	0.47297	67.28	67.055	67.528	0					20	11	2	0	0	0	0.027462	1	6262	6262		39.253	5.7372	1	189810	+		25852	24001	21124	21151	29008	29008					0.031786444485987886
KQFPIDILKID	11	Unmodified	_KQFPIDILKID_					0	0	0		tr|A0A553SQB9|A0A553SQB9_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26305PE=4SV=1	tr|A0A553SQB9|A0A553SQB9_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26305PE=4SV=1	tr|A0A553SQB9|A0A553SQB9_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26305PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	443.9324951171875	3	443.930739	1328.77039	0.30276	0.00013441	2.7202	0.0012076	3.0229	0.001342	443.93203706460594	28.814	1.1472	28.814	28.588	29.735	0					74	22	5	0	0	0	0.1228	1	970	970		92.239	23.613	1	3380500			25853	34144	21125	21152	29009	29009					0.11915360842613154
KQGENVKGAL	10	Unmodified	_KQGENVKGAL_					0	0	0			REV__nc|ENSG00000118200|Q08AD1-2|CAMSAP2	REV__nc|ENSG00000118200|Q08AD1-2|CAMSAP2	MULTI-MSMS	OvCa99_classI_Rep5	1	522.2955932617188	2	522.29583	1042.57711	-0.95181	-0.00049713	0.18644	9.7378E-05	-0.76537	-0.00039975	522.2959955759313	29.211	1.8946	29.211	28.588	30.483	0					77	37	5	0	0	0	0.32926	1	1012	1012		77.318	2.2743	1	5920500	+		25854	18384	21126	21153	29010	29010					0.057522438462456194
KQGHVRSL	8	Unmodified	_KQGHVRSL_					0	0	0		ENSG00000126016|ENST00000371959|AMOT;nc|ENSG00000166025|Q8IY63-2|AMOTL1;ENSG00000166025|ENST00000433060|AMOTL1	ENSG00000126016|ENST00000371959|AMOT;nc|ENSG00000166025|Q8IY63-2|AMOTL1	ENSG00000126016|ENST00000371959|AMOT	MULTI-MSMS	OvCa99_classI_Rep5	1	462.7725524902344	2	462.772326	923.530098	-0.76958	-0.00035614	0.55954	0.00025894	-0.21005	-9.7203E-05	462.77252611260724	26.417	0.59941	26.417	26.242	26.841	0					14	11	2	0	0	0	0.73766	1	685	685		32.812	3.6629	1	184830			25855	3763;6629	21127	21154	29011	29011					0.0652742908575874
KQGKVVQVI	9	Unmodified	_KQGKVVQVI_					0	0	0		ENSG00000143314|ENST00000361531|MRPL24	ENSG00000143314|ENST00000361531|MRPL24	ENSG00000143314|ENST00000361531|MRPL24	MULTI-MSMS	OvCa99_classI_Rep5	1	499.82183837890625	2	499.821484	997.628415	-0.48812	-0.00024397	0.49601	0.00024792	0.0078872	3.9422E-06	499.82174363755206	48.02	0.90718	48.02	47.768	48.675	0					39	20	3	0	0	0	0.38529	1	3512	3512		53.351	1.0523	1	2551400			25856	5031	21128	21155	29012	29012					0.1295061261095043
KQGLSSPT	8	Unmodified	_KQGLSSPT_					0	0	0			REV__ENST00000298119.8_1_14:42076845-42077079:+|nuORF	REV__ENST00000298119.8_1_14:42076845-42077079:+|nuORF	MSMS	OvCa9_classI_Rep3	3	409.21990966796875	2	409.224342	816.434132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	157.45	1	156.28	155.78	156.78	-1.1707								0	0	0	0.30129	1	13578	13578		26.796	2.5934	1		+		25857	24212	21129	21156	29013	29013					0.018572364549982012
KQGQVQAVSS	10	Unmodified	_KQGQVQAVSS_					0	0	0		ENST00000461375.1_1_1:44280573-44366462:+|nuORF	ENST00000461375.1_1_1:44280573-44366462:+|nuORF	ENST00000461375.1_1_1:44280573-44366462:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.2437744140625	2	516.277638	1030.54072	-0.6361	-0.0003284	0.22152	0.00011436	-0.41458	-0.00021404	516.2777788818197	47.99	0.56472	47.99	47.768	48.332	0					22	12	3	0	0	0	0.026956	1	3484	3484		34.173	5.9183	1	611130			25858	12176	21130	21157	29014	29014					0.026673669495039576
KQGRTPLMV	9	Unmodified	_KQGRTPLMV_					0	0	0		ENSG00000115183|ENST00000263635|TANC1;TANC1|p.T1589Ifs*85|1|0.16|ENSG00000115183|chr2:159230192-159230192|C/-|frameshift_variant;nc|ENSG00000115183|Q9C0D5-2|TANC1;ENST00000470074.1_1_2:160055548-160076048:+|nuORF	ENSG00000115183|ENST00000263635|TANC1	ENSG00000115183|ENST00000263635|TANC1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.298828125	2	515.297319	1028.58008	-0.59886	-0.00030859	0.55547	0.00028623	-0.043387	-2.2357E-05	515.2974377815378	51.603	1.1039	51.603	51.374	52.478	0					67	25	4	0	0	0	0.14998	2	3988	3988;4021		84.916	33.58	1	3775500			25859	3067	21131	21158	29015;29016	29015					0.06693795699402472
KQGSPIHVLK	10	Unmodified	_KQGSPIHVLK_					0	0	0		ENST00000489767.5_1_2:219130391-219134818:-|nuORF;ENSG00000127837|ENST00000248450|AAMP;ENST00000475678.5_1_2:219130391-219130901:-|nuORF;ENST00000465442.1_1_2:219130391-219131358:-|nuORF	ENST00000489767.5_1_2:219130391-219134818:-|nuORF	ENST00000489767.5_1_2:219130391-219134818:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8381958007812	2	553.837665	1105.66078	0.061409	3.4011E-05	-0.26525	-0.00014691	-0.20385	-0.0001129	553.837451783885	21.657	1.2142	20.318	19.966	21.18	-1.3386					43	23	3	0	0	0	0.6349	1	201	201		37.812	3.639	1	116510			25860	3848	21132	21159	29017	29017					0.11217400013924816
KQGYVIYRI	9	Unmodified	_KQGYVIYRI_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;nc|ENSG00000174748|P61313-2|RPL15	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-MSMS	OvCa99_classI_Rep5	1	570.3334350585938	2	570.332216	1138.64988	0.19995	0.00011404	-0.94261	-0.0005376	-0.74266	-0.00042356	570.3316611476074	72.743	1.1857	72.743	72.492	73.678	0					102	29	4	0	0	0	0.18193	1	7147	7147		79.451	2.1334	1	52662000			25861	7488	21133	21160	29018	29018					0.08609997639655376
KQHFINQAV	9	Unmodified	_KQHFINQAV_					0	0	0		ENST00000589445.1_1_19:901889-913148:-|nuORF;ENST00000590454.2_1_19:900936-902165:-|nuORF;ENSG00000198858|ENST00000361574|R3HDM4	ENST00000589445.1_1_19:901889-913148:-|nuORF	ENST00000589445.1_1_19:901889-913148:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	542.7996826171875	2	542.79854	1083.58253	-0.17644	-9.5774E-05	0.097769	5.3069E-05	-0.078676	-4.2705E-05	542.7984942779483	51.141	0.80759	51.141	50.819	51.627	0					50	18	4	0	0	0	0.18193	2	3914	3914;3935		79.451	16.145	1	4402700			25862	8892	21134	21161	29019;29020	29019					0.04407967428687698
KQHGVNVSV	9	Unmodified	_KQHGVNVSV_					0	0	0		nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;WDR59-UBAP2L|1|fusion;CTSB-UBAP2L|1|fusion;nc|ENSG00000143569|Q14157-4|UBAP2L;nc|ENSG00000143569|Q14157-1|UBAP2L;WDR59-UBAP2L|2|fusion;CTSB-UBAP2L|2|fusion	nc|ENSG00000143569|Q14157-3|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	MULTI-MSMS	OvCa99_classI_Rep5	1	484.2681579589844	2	484.269616	966.524678	-0.74255	-0.00035959	0.078429	3.7981E-05	-0.66412	-0.00032161	484.26959400805873	39.862	0.95039	39.862	39.669	40.619	0					57	20	4	0	0	0	0.11471	2	2372	2372;2401		93.195	35.384	1	8256100			25863	5073	21135	21162	29021;29022	29021					0.04007705503283887
KQHIDLIVLD	10	Unmodified	_KQHIDLIVLD_					0	0	0		tr|A0A7D6VLQ9|A0A7D6VLQ9_9CLOTHemeresponseregulatorHssROS=ClostridiumintestinaleOX=36845GN=HZF06_12885PE=4SV=1	tr|A0A7D6VLQ9|A0A7D6VLQ9_9CLOTHemeresponseregulatorHssROS=ClostridiumintestinaleOX=36845GN=HZF06_12885PE=4SV=1	tr|A0A7D6VLQ9|A0A7D6VLQ9_9CLOTHemeresponseregulatorHssROS=ClostridiumintestinaleOX=36845GN=HZF06_12885PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.3211059570312	2	597.348063	1192.68157	2.6831	0.0016027	-0.0068505	-4.0921E-06	2.6762	0.0015987	597.3480931614987	121.53	0.46259	121.53	121.29	121.75	0					16	9	2	0	0	0	0.027145	1	13972	13972		24.519	2.5593	1	124230			25864	34640	21136	21163	29023	29023					0.09293945602939857
KQHNITQHM	9	Unmodified	_KQHNITQHM_					0	0	0		ENSG00000118096|ENST00000264021|IFT46;ENST00000531201.5_1_11:118415633-118427808:-|nuORF;nc|ENSG00000118096|Q9NQC8-2|IFT46	ENSG00000118096|ENST00000264021|IFT46	ENSG00000118096|ENST00000264021|IFT46	MULTI-MSMS	OvCa99_classI_Rep5	1	568.7846069335938	2	568.785107	1135.55566	-0.5794	-0.00032955	0.34979	0.00019896	-0.22961	-0.0001306	568.785143297108	28.764	0.34924	28.764	28.638	28.987	0					17	6	4	0	0	0	0.35444	1	973	973		56.721	10.749	1	131380			25865	3287	21137	21164	29024	29024					-0.006694644541539674
KQHRSQQS	8	Unmodified	_KQHRSQQS_					0	0	0		MUC13|p.S145Afs*25|1|0.11|ENSG00000173702|chr3:124927582-124927613|CCTGATGATTGATTGTCTTCTGTGGTGGGGGA/-|frameshift_variant	MUC13|p.S145Afs*25|1|0.11|ENSG00000173702|chr3:124927582-124927613|CCTGATGATTGATTGTCTTCTGTGGTGGGGGA/-|frameshift_variant	MUC13|p.S145Afs*25|1|0.11|ENSG00000173702|chr3:124927582-124927613|CCTGATGATTGATTGTCTTCTGTGGTGGGGGA/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.30517578125	2	499.759946	997.50534	-1.3987	-0.000699	1.1239	0.00056168	-0.27477	-0.00013732	499.7603540045133	43.824	1.1115	40.817	40.483	41.595	-3.0074					56	21	3	0	0	0	0.028476	1	2092	2092		42.474	18.272	1	233330			25866	14843	21138	21165	29025	29025					0.006487492123824268
KQHRSQQS	8	Unmodified	_KQHRSQQS_					0	0	0		MUC13|p.S145Afs*25|1|0.11|ENSG00000173702|chr3:124927582-124927613|CCTGATGATTGATTGTCTTCTGTGGTGGGGGA/-|frameshift_variant	MUC13|p.S145Afs*25|1|0.11|ENSG00000173702|chr3:124927582-124927613|CCTGATGATTGATTGTCTTCTGTGGTGGGGGA/-|frameshift_variant	MUC13|p.S145Afs*25|1|0.11|ENSG00000173702|chr3:124927582-124927613|CCTGATGATTGATTGTCTTCTGTGGTGGGGGA/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	499.759946	997.50534	0.19229	9.6098E-05	-0.80688	-0.00040324	-0.61459	-0.00030715	499.75943550003785	43.542	0.99337	40.832	40.509	41.502	-2.7097	0.0076553	-0.00088831	NaN	25.45	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96709			25867	14843	21138	21165							0.006487492123824268
KQHSKLLSM	9	Unmodified	_KQHSKLLSM_					0	0	0		ENST00000571914.1_1_17:79604394-79604607:+|nuORF	ENST00000571914.1_1_17:79604394-79604607:+|nuORF	ENST00000571914.1_1_17:79604394-79604607:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.2967529296875	2	536.302601	1070.59065	-0.79518	-0.00042646	-2.2361	-0.0011992	-3.0313	-0.0016257	536.3017335233357	61.834	0.99847	58.376	57.963	58.962	-3.4577					31	20	2	0	0	0	0.027462	1	4279	4279		25.574	10.709	1	54466			25868	13907	21139	21166	29026	29026					0.05817778353821268
KQIANIDRI	9	Unmodified	_KQIANIDRI_					0	0	0		nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11;nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11;ENST00000381584.5_2_10:225952-243884:+|nuORF	nc|ENSG00000015171|Q15326-6|ZMYND11	nc|ENSG00000015171|Q15326-6|ZMYND11	MSMS	OvCa99_classI_Rep5	1	535.8211059570312	2	535.819473	1069.62439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.303	1	57.303	56.803	57.803	0								0	0	0	0.054374	1	4805	4805		77.318	7.69	1				25869	1002	21140	21167	29027	29027					0.09236523117237994
KQIFEERKRRI	11	Unmodified	_KQIFEERKRRI_					0	0	0			REV__ENSG00000182934|ENST00000332118|SRPRA	REV__ENSG00000182934|ENST00000332118|SRPRA	MULTI-MSMS	OvCa9_classI_Rep2	2	501.6343994140625	3	501.63532	1501.88413	-5.5139	-0.002766	3.033	0.0015215	-2.4809	-0.0012445	501.63686894791874	162.29	1.9089	162.06	160.59	162.5	-0.22696					90	37	3	0	0	0	0.72568	1	16442	16442		6.6596	0.33873	1	106580	+		25870	22328	21141	21168	29028	29028					0.15326268728199466
KQIFEERKRRI	11	Unmodified	_KQIFEERKRRI_					0	0	0			REV__ENSG00000182934|ENST00000332118|SRPRA	REV__ENSG00000182934|ENST00000332118|SRPRA	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.63580322265625	3	501.63532	1501.88413	-6.8749	-0.0034487	3.7017	0.0018569	-3.1732	-0.0015918	501.63750106294935	161.08	3.6355	159.45	157.11	160.75	-1.6239					206	87	3	0	0	0	0.72511	1	15876	15876		14.086	3.9821	1	47462	+		25871	22328	21141	21168	29029	29029					0.15326268728199466
KQIIGPNKK	9	Unmodified	_KQIIGPNKK_					0	0	0			REV__tr|A0A7D6VRS8|A0A7D6VRS8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13310PE=4SV=1	REV__tr|A0A7D6VRS8|A0A7D6VRS8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13310PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	513.3269653320312	2	513.326934	1024.63931	0.26441	0.00013573	-0.33992	-0.00017449	-0.075507	-3.876E-05	513.3265060249057	31.277	0.7384	28.567	28.396	29.134	-2.7097					27	14	3	0	0	0	0.48324	1	943	943		44.117	4.864	1	56610	+		25872	31443	21142	21169	29030	29030					0.12798014985219197
KQIKEIKEV	9	Unmodified	_KQIKEIKEV_					0	0	0		ENST00000581764.1_1_17:61907522-61908306:+|nuORF;ENST00000579147.5_1_17:61906826-61909326:+|nuORF;nc|ENSG00000087191|P62195-2|PSMC5;ENSG00000087191|ENST00000310144|PSMC5	ENST00000581764.1_1_17:61907522-61908306:+|nuORF	ENST00000581764.1_1_17:61907522-61908306:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	557.844970703125	2	557.845156	1113.67576	0.092229	5.145E-05	-0.42655	-0.00023795	-0.33432	-0.0001865	557.844763548245	35.464	0.45942	35.464	35.293	35.753	0					21	9	3	0	0	0	0.22621	1	1802	1802		71.877	0	1	323630			25873	1766	21143	21170	29031	29031					0.12346847091248492
KQIKLVHKNM	10	Unmodified	_KQIKLVHKNM_					0	0	0			REV__ENSG00000136937|ENST00000375147|NCBP1	REV__ENSG00000136937|ENST00000375147|NCBP1	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8684692382812	2	619.873725	1237.7329	-3.8587	-0.0023919	-3.029	-0.0018776	-6.8877	-0.0042695	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.69986	1	15399	15399		30.504	3.4563	1	492670	+		25874	19423	21144	21171	29032	29032					0.12353991096006212
KQILCLVNVSH	11	Unmodified	_KQILCLVNVSH_					0	0	0		ENSG00000113971|ENST00000337331|NPHP3;ENST00000474871.5_1_3:132405102-132413706:-|nuORF;nc|ENSG00000113971|Q7Z494-2|NPHP3;ENST00000471702.2_2_3:132363653-132416205:-|nuORF	ENSG00000113971|ENST00000337331|NPHP3	ENSG00000113971|ENST00000337331|NPHP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.5599670410156	3	418.572669	1252.69618	0.30279	0.00012674	2.1893	0.00091639	2.4921	0.0010431	418.9080074286668	43.17	0.3418	43.17	42.97	43.312	0					13	7	2	0	0	0	0.025466	1	2818	2818		25.068	6.5367	1	71953			25875	3005	21145	21172	29033	29033					0.07993694479432634
KQILCVNVK	9	Unmodified	_KQILCVNVK_					0	0	0		ENST00000585769.5_1_18:77736771-77746670:-|nuORF	ENST00000585769.5_1_18:77736771-77746670:-|nuORF	ENST00000585769.5_1_18:77736771-77746670:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.294189453125	2	522.815344	1043.61614	-1.0757	-0.0005624	-3.251	-0.0016997	-4.3267	-0.0022621	522.8133682002144	65.622	0.58313	62.137	61.889	62.472	-3.4854					20	11	2	0	0	0	0.02741	1	4713	4713		82.305	2.854	1	49891			25876	14040	21146	21173	29034	29034					0.0960725287625337
KQIRILLLNEM	11	Unmodified	_KQIRILLLNEM_					0	0	0		ENSG00000162688|ENST00000361915|AGL;AGL|p.K422Tfs*12|1|0.04|ENSG00000162688|chr1:99875436-99875437|-/CTCCTGAGGTTAGAATATTTGGT|frameshift_variant	ENSG00000162688|ENST00000361915|AGL	ENSG00000162688|ENST00000361915|AGL	MULTI-MSMS	OvCa9_classI_Rep3	3	457.60858154296875	3	457.611124	1369.81154	-6.2055	-0.0028397	-0.31855	-0.00014577	-6.5241	-0.0029855	457.6108688134911	157.03	3.4081	155.86	154.91	158.32	-1.1707					147	80	2	0	0	0	0.72466	2	13543	13466;13543		20.03	4.8757	1	68588			25877	6215	21147	21174	29035;29036	29036					0.14142798610464524
KQISLAPETL	10	Unmodified	_KQISLAPETL_					0	0	0		nc|ENSG00000165801|Q8TER5-2|ARHGEF40;ENSG00000165801|ENST00000298694|ARHGEF40	nc|ENSG00000165801|Q8TER5-2|ARHGEF40	nc|ENSG00000165801|Q8TER5-2|ARHGEF40	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.7860107421875	2	550.321514	1098.62847	2.2139	0.0012184	2.9696	0.0016342	5.1835	0.0028526	550.3238777881201	120.99	0.47279	120.99	120.74	121.21	0					14	10	2	0	0	0	0.026994	1	13927	13927		32.812	15.447	1	101060			25878	6600	21148	21175	29037	29037					0.08310567820262804
KQITYKND	8	Unmodified	_KQITYKND_					0	0	0		tr|A0A553SQV6|A0A553SQV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07360PE=4SV=1	tr|A0A553SQV6|A0A553SQV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07360PE=4SV=1	tr|A0A553SQV6|A0A553SQV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07360PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.2862548828125	2	505.269281	1008.52401	-0.15199	-7.6795E-05	-1.3927	-0.00070367	-1.5446	-0.00078046	505.26626184263813	67.528	0.23456	67.528	67.448	67.683	0					9	5	2	0	0	0	0.028476	1	6342	6342		24.203	3.7209	1	127270			25879	34202	21149	21176	29038	29038					0.020088660635678934
KQIWAWSK	8	Unmodified	_KQIWAWSK_					0	0	0		nc|ENSG00000106003|Q8NES3-4|LFNG	nc|ENSG00000106003|Q8NES3-4|LFNG	nc|ENSG00000106003|Q8NES3-4|LFNG	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.292724609375	2	523.792727	1045.5709	-0.18346	-9.6094E-05	-4.4656	-0.002339	-4.649	-0.0024351	523.7900975434364	64.292	0.94757	61.567	61.286	62.233	-2.7245					31	17	3	0	0	0	0.028476	1	4945	4945		32.812	10.853	1	67193			25880	14944	21150	21177	29039	29039					0.049937704053718335
KQIYRLAVKE	10	Unmodified	_KQIYRLAVKE_					0	0	0		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	OvCa9_classI_Rep4_	4	624.3731689453125	2	624.377155	1246.73976	-6.4688	-0.004039	-2.9173	-0.0018215	-9.3861	-0.0058604	624.3749313698447	163.73	0.6391	162.09	161.79	162.43	-1.6336					37	17	3	0	0	0	0.62299	1	16183	16183		39.253	2.8061	1	75169			25881	3330	21151	21178	29040	29040					0.12625627248235105
KQKARRLTIL	10	Unmodified	_KQKARRLTIL_					0	0	0		ENSG00000165621|ENST00000541038|OXGR1;chr13:96987775-96989758|344|15.04|0.62|4.6|-|ENST00000543457|OXGR1,OXGR1	ENSG00000165621|ENST00000541038|OXGR1	ENSG00000165621|ENST00000541038|OXGR1	MULTI-MSMS	OvCa9_classI_Rep3	3	409.60845947265625	3	409.606701	1225.79827	1.1396	0.00046679	1.9436	0.00079611	3.0832	0.0012629	409.6074659919173	107.95	5.8573	106.76	106.27	112.13	-1.1978					409	114	4	0	0	0	0.71173	1	8009	8009		29.17	2.1227	1	1037400			25882	338	21152	21179	29041	29041					0.19440728613380998
KQKAVKEVI	9	Unmodified	_KQKAVKEVI_					0	0	0			REV__tr|A0A7D6VMM7|A0A7D6VMM7_9CLOTPhosphateacetyltransferaseOS=ClostridiumintestinaleOX=36845GN=ptaPE=3SV=1	REV__tr|A0A7D6VMM7|A0A7D6VMM7_9CLOTPhosphateacetyltransferaseOS=ClostridiumintestinaleOX=36845GN=ptaPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.7987670898438	2	521.834591	1041.65463	-0.34378	-0.0001794	-0.35666	-0.00018612	-0.70044	-0.00036551	521.8342369112922	59.172	1.1861	55.78	55.502	56.689	-3.392					44	23	3	0	0	0	0.027462	1	3910	3910		38.806	5.2906	1	172620	+		25883	31139	21153	21180	29042	29042					0.13546881782417586
KQKAVKEVI	9	Unmodified	_KQKAVKEVI_					0	0	0			REV__tr|A0A7D6VMM7|A0A7D6VMM7_9CLOTPhosphateacetyltransferaseOS=ClostridiumintestinaleOX=36845GN=ptaPE=3SV=1	REV__tr|A0A7D6VMM7|A0A7D6VMM7_9CLOTPhosphateacetyltransferaseOS=ClostridiumintestinaleOX=36845GN=ptaPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.834591	1041.65463	-0.11414	-5.9563E-05	-0.20831	-0.0001087	-0.32245	-0.00016827	521.8343309529884	58.495	1.0143	55.715	55.385	56.399	-2.7801	-0.032509	4.5777E-05	NaN	38.806	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68629	+		25884	31139	21153	21180							0.13546881782417586
KQKDIEEKL	9	Unmodified	_KQKDIEEKL_					0	0	0			REV__tr|A0A553SLM8|A0A553SLM8_NIACIHADfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_20900PE=4SV=1	REV__tr|A0A553SLM8|A0A553SLM8_NIACIHADfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_20900PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	565.8234252929688	2	565.824421	1129.63429	-1.6624	-0.00094061	1.3407	0.00075858	-0.32171	-0.00018203	565.8250621645125	34.497	1.3866	31.787	31.513	32.9	-2.7097					82	27	4	0	0	0	0.35694	1	1354	1354		56.434	8.4743	1	859200	+		25885	30241	21154	21181	29043	29043					0.07465666331927423
KQKDIEEKL	9	Unmodified	_KQKDIEEKL_					0	0	0			REV__tr|A0A553SLM8|A0A553SLM8_NIACIHADfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_20900PE=4SV=1	REV__tr|A0A553SLM8|A0A553SLM8_NIACIHADfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_20900PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.8233032226562	2	565.824421	1129.63429	1.6596	0.00093904	-2.0536	-0.001162	-0.39402	-0.00022295	565.8229237234004	33.487	1.6381	30.699	30.359	31.997	-2.7881					114	32	6	0	0	0	0.26076	1	919	919		67.494	8.7117	1	556400	+		25886	30241	21154	21181	29044	29044					0.07465666331927423
KQKDLGDGV	9	Unmodified	_KQKDLGDGV_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.H2029Qfs*32|1|0.9|ENSG00000196924|chrX:154353130-154353140|TGCTGGCCACG/-|frameshift_variant;FLNA|p.Y538D|1|0.84|ENSG00000196924|chrX:154365215-154365215|A/C|missense_variant	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OvCa99_classI_Rep5	1	480.26116943359375	2	480.261456	958.50836	-0.057382	-2.7558E-05	-0.010679	-5.1285E-06	-0.06806	-3.2687E-05	480.2612759358844	33.257	0.5443	33.257	33.039	33.583	0					27	10	4	0	0	0	0.2422	1	1511	1511		69.628	16.276	1	457850			25887	8659	21155	21182	29045	29045					0.02744579546526893
KQKDLQEKI	9	Unmodified	_KQKDLQEKI_					0	0	0		nc|ENSG00000136940|Q13371-2|PDCL;ENSG00000136940|ENST00000259467|PDCL	nc|ENSG00000136940|Q13371-2|PDCL	nc|ENSG00000136940|Q13371-2|PDCL	MULTI-MSMS	OvCa99_classI_Rep5	1	565.3316040039062	2	565.332413	1128.65027	0.32	0.00018091	-1.4475	-0.00081834	-1.1275	-0.00063743	565.3314530600347	33.014	1.8404	33.014	32.651	34.491	0					91	37	5	0	0	0	0.033166	2	1474	1474;1499		132.76	5.3742	1	4884600			25888	4540	21156	21183	29046;29047	29046					0.09109372568855179
KQKEAERKI	9	Unmodified	_KQKEAERKI_					0	0	0		nc|ENSG00000264522|Q6GQQ9-2|OTUD7B;ENSG00000264522|ENST00000581312|OTUD7B	nc|ENSG00000264522|Q6GQQ9-2|OTUD7B	nc|ENSG00000264522|Q6GQQ9-2|OTUD7B	MULTI-MSMS	OvCa99_classI_Rep5	1	565.3383178710938	2	565.33803	1128.66151	0.22784	0.0001288	-0.1239	-7.0043E-05	0.10394	5.8762E-05	565.3378052470453	22.297	0.47479	22.297	22.142	22.617	0					27	10	4	0	0	0	0.53483	1	190	190		39.253	1.4413	1	376830			25889	9519	21157	21184	29048	29048					0.10232194662989968
KQKEVEEQLQ	10	Unmodified	_KQKEVEEQLQ_					0	0	0			REV__PCNT|p.A2734Qfs*36|1|0.3|ENSG00000160299|chr21:46431663-46431664|-/CAGAA|frameshift_variant	REV__PCNT|p.A2734Qfs*36|1|0.3|ENSG00000160299|chr21:46431663-46431664|-/CAGAA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	629.835205078125	2	629.835517	1257.65648	-0.52126	-0.00032831	0.32829	0.00020677	-0.19297	-0.00012154	629.8355493868769	37.415	0.55542	37.415	37.205	37.761	0					29	11	4	0	0	0	0.34811	1	2053	2053		75.043	9.5779	1	548170	+		25890	20654	21158	21185	29049	29049					0.037958460097115676
KQKIWFKT	8	Unmodified	_KQKIWFKT_					0	0	0			REV__nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	REV__nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	539.822021484375	2	539.824027	1077.6335	-0.70708	-0.0003817	-3.4255	-0.0018491	-4.1325	-0.0022308	539.8221244498429	33.964	0.52828	33.964	33.776	34.304	0					26	10	3	0	0	0	0.68714	1	1595	1595		45.952	1.8352	1	774800	+		25891	18445	21159	21186	29050	29050					0.0977891647355591
KQKKPLVGK	9	Unmodified	_KQKKPLVGK_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000422486.1_1_3:185135285-185135612:-|nuORF;ENST00000567229.5_1_15:66791747-66793486:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	OvCa9_classI_Rep2	2	513.3445434570312	2	513.345126	1024.6757	2.252	0.0011561	-2.4669	-0.0012664	-0.21488	-0.00011031	513.3436996113568	27.778	1.0347	25.068	24.871	25.906	-2.7097					48	22	3	0	0	0	0.31747	4	512	507;512;515;520		60.972	12.282	1	181780			25892	7465	21160	21187	29051;29052;29053;29054	29052					0.16434891881931435
KQKKRDRPP	9	Unmodified	_KQKKRDRPP_					0	0	0			REV__ENST00000413498.1_1_7:22921730-22922006:+|nuORF	REV__ENST00000413498.1_1_7:22921730-22922006:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	576.8512573242188	2	576.851638	1151.68872	1.83	0.0010556	-1.8159	-0.0010475	0.014148	8.1615E-06	576.8506192016633	27.345	0.44167	24.635	24.43	24.871	-2.7097					20	9	3	0	0	0	0.72091	1	452	452		10.866	0.6003	1	24247	+		25893	22972	21161	21188	29055	29055					0.1189472299404315
KQKLLENIKQ	10	Unmodified	_KQKLLENIKQ_					0	0	0			REV__ENSG00000134318|ENST00000315872|ROCK2	REV__ENSG00000134318|ENST00000315872|ROCK2	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.5916442871094	3	414.590717	1240.75032	0.92323	0.00038276	0.25554	0.00010595	1.1788	0.00048871	414.5907458901833	32.76	2.0475	30.065	29.544	31.591	-2.6954					114	43	4	0	0	0	0.6898	1	772	772		31.634	7.4025	1	215500	+		25894	19194	21162	21189	29056	29056					0.13957609902649892
KQKLQDVHV	9	Unmodified	_KQKLQDVHV_					0	0	0		nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-11|MYLK;nc|ENSG00000065534|Q15746-7|MYLK;MYLK|p.E1444Sfs*9|1|0.06|ENSG00000065534|chr3:123649056-123649056|C/-|frameshift_variant;ENST00000504946.5_1_3:123400948-123419770:-|nuORF	nc|ENSG00000065534|Q15746-5|MYLK	nc|ENSG00000065534|Q15746-5|MYLK	MULTI-MSMS	OvCa99_classI_Rep5	1	547.8193969726562	2	547.819473	1093.62439	-0.69177	-0.00037897	0.14292	7.8293E-05	-0.54886	-0.00030067	547.8194125434903	38.046	0.54283	38.046	37.851	38.394	0					31	11	4	0	0	0	0.60342	1	2144	2144		31.53	1.0262	1	458260			25895	1330	21163	21190	29057	29057					0.0813252311722863
KQKNEQIRKV	10	Unmodified	_KQKNEQIRKV_					0	0	0			REV__nc|ENSG00000123360|Q01064-2|PDE1B	REV__nc|ENSG00000123360|Q01064-2|PDE1B	MULTI-MSMS	OvCa9_classI_Rep4_	4	424.2590026855469	3	424.257849	1269.75172	-0.96426	-0.00040909	0.71015	0.00030129	-0.25411	-0.00010781	424.2581474428706	54.863	1.4795	51.615	51.336	52.816	-3.2474					82	28	4	0	0	0	0.64812	1	3437	3437		36.318	6.7669	1	508750	+		25896	18636	21164	21191	29058	29058					0.12763243991389572
KQKNLDYFSL	10	Unmodified	_KQKNLDYFSL_					0	0	0			REV__tr|A0A7D6ZI13|A0A7D6ZI13_9CLOTAminoacidABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02315PE=3SV=1	REV__tr|A0A7D6ZI13|A0A7D6ZI13_9CLOTAminoacidABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02315PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	628.3477172851562	2	628.337695	1254.66084	2.2927	0.0014406	3.6539	0.0022959	5.9467	0.0037365	628.3384281487307	84.983	0.87138	84.983	84.631	85.502	0					26	20	2	0	0	0	0.027028	1	8918	8918		31.53	0	1	1013100	+		25897	32043	21165	21192	29059	29059					0.04369355223298044
KQKRHKNT	8	Unmodified	_KQKRHKNT_					0	0	0		TMEM2|p.T1263Rfs*15|1|0.07|ENSG00000135048|chr9:71690156-71690156|T/-|frameshift_variant;nc|ENSG00000135048|Q9UHN6-2|CEMIP2;ENSG00000135048|ENST00000377044|CEMIP2	TMEM2|p.T1263Rfs*15|1|0.07|ENSG00000135048|chr9:71690156-71690156|T/-|frameshift_variant	TMEM2|p.T1263Rfs*15|1|0.07|ENSG00000135048|chr9:71690156-71690156|T/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2885131835938	2	520.309606	1038.60466	-0.84835	-0.00044141	0.082104	4.272E-05	-0.76625	-0.00039869	520.3096550032185	54.15	0.24444	54.15	54.048	54.293	0					6	5	2	0	0	0	0.028476	1	4348	4348		29.15	0	1	126570			25898	4352	21166	21193	29060	29060					0.08690191897130717
KQKSTVLTI	9	Unmodified	_KQKSTVLTI_					0	0	0		ENSG00000124491|ENST00000264870|F13A1	ENSG00000124491|ENST00000264870|F13A1	ENSG00000124491|ENST00000264870|F13A1	MULTI-MSMS	OvCa99_classI_Rep5	1	509.3202819824219	2	509.318774	1016.623	-0.38431	-0.00019573	0.3391	0.00017271	-0.045206	-2.3024E-05	509.31881367773417	53.841	0.81544	53.841	53.519	54.334	0					55	19	4	0	0	0	0.070405	1	4308	4308		107.01	11.192	1	6134000			25899	3654	21167	21194	29061	29061					0.11534889028473572
KQKTEEKEI	9	Unmodified	_KQKTEEKEI_					0	0	0		ENST00000462803.5_1_9:82286241-82340056:+|nuORF;nc|ENSG00000106829|Q04727-2|TLE4;nc|ENSG00000106829|Q04727-4|TLE4;ENSG00000106829|ENST00000376552|TLE4;nc|ENSG00000106829|Q04727-3|TLE4	ENST00000462803.5_1_9:82286241-82340056:+|nuORF	ENST00000462803.5_1_9:82286241-82340056:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	566.812255859375	2	566.814053	1131.61355	-0.24601	-0.00013944	0.49161	0.00027865	0.2456	0.00013921	566.8141095022962	24.461	0.44819	24.461	24.188	24.636	0					16	8	3	0	0	0	0.51865	1	451	451		40.778	7.9657	1	107160			25900	2577	21168	21195	29062	29062					0.05301075952274914
KQKVMNHV	8	Unmodified	_KQKVMNHV_					0	0	0		ENSG00000177606|ENST00000371222|JUN	ENSG00000177606|ENST00000371222|JUN	ENSG00000177606|ENST00000371222|JUN	MULTI-MSMS	OvCa99_classI_Rep5	1	492.2762145996094	2	492.276386	982.53822	-1.105	-0.00054394	1.0194	0.00050181	-0.08559	-4.2134E-05	492.2765492308316	27.216	0.79994	27.216	26.742	27.542	0					29	15	3	0	0	0	0.44269	1	780	780		83.287	19.981	1	651420			25901	7699	21169	21196	29063	29063					0.046252400108755864
KQKVMTHV	8	Unmodified	_KQKVMTHV_					0	0	0		ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	MULTI-MSMS	OvCa99_classI_Rep5	1	485.7785949707031	2	485.778762	969.542971	-0.69862	-0.00033937	0.68343	0.00033199	-0.015194	-7.3811E-06	485.77902690102394	28.764	1.1969	28.764	28.588	29.785	0					41	23	3	0	0	0	0.35163	1	964	964		97.473	12.113	1	1261700			25902	7187	21170	21197	29064	29064					0.05698124153639128
KQLAGMSLTI	10	Unmodified	_KQLAGMSLTI_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;ENST00000568206.1_1_15:28360544-28362081:-|nuORF;ENST00000566635.5_1_15:28356911-28362639:-|nuORF	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	OvCa9_classI_Rep2	2	531.3031005859375	2	531.30481	1060.59507	-1.6359	-0.00086914	-2.0539	-0.0010912	-3.6897	-0.0019604	531.3036361456938	121.24	1.2365	121.04	120.75	121.99	-0.19718					54	24	3	0	0	0	0.50999	1	11717	11717		52.937	5.0211	1	173930			25903	3901	21171	21198	29065	29065					0.0671924277673952
KQLAHLAKL	9	Unmodified	_KQLAHLAKL_					0	0	0			REV__ENSG00000275023|ENST00000621332|MLLT6	REV__ENSG00000275023|ENST00000621332|MLLT6	MULTI-MSMS	OvCa9_classI_Rep2	2	511.326904296875	2	511.329476	1020.6444	-3.9215	-0.0020052	-0.26328	-0.00013462	-4.1848	-0.0021398	511.32921715256015	153.82	1.2958	153.59	153.28	154.58	-0.22696					76	27	4	0	0	0	0.65476	1	15702	15702		25.45	1.2474	1	348680	+		25904	23623	21172	21199	29066	29066					0.13490318847846083
KQLAVRVF	8	Unmodified	_KQLAVRVF_					0	0	0		tr|A0A553SJK2|A0A553SJK2_NIACIIron-containingalcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16940PE=4SV=1	tr|A0A553SJK2|A0A553SJK2_NIACIIron-containingalcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16940PE=4SV=1	tr|A0A553SJK2|A0A553SJK2_NIACIIron-containingalcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16940PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	480.8021240234375	2	480.803094	959.591636	1.2048	0.00057928	-3.7018	-0.0017798	-2.4969	-0.0012005	480.8012000041993	155.2	0.90724	155.2	154.83	155.73	0					48	17	4	0	0	0	0.72922	1	18200	18200		37.028	0.58173	1	491110			25905	33512	21173	21200	29067	29067					0.11022360785045748
KQLAVRVF	8	Unmodified	_KQLAVRVF_					0	0	0		tr|A0A553SJK2|A0A553SJK2_NIACIIron-containingalcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16940PE=4SV=1	tr|A0A553SJK2|A0A553SJK2_NIACIIron-containingalcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16940PE=4SV=1	tr|A0A553SJK2|A0A553SJK2_NIACIIron-containingalcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16940PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	480.8013000488281	2	480.803094	959.591636	-3.5276	-0.0016961	-0.80978	-0.00038934	-4.3374	-0.0020854	480.80256125573777	150.83	1.6209	150.61	150.17	151.79	-0.22696					93	32	4	0	0	0	0.72922	4	15291	15291;15309;15327;15365		37.028	15.326	1	676150			25906	33512	21173	21200	29068;29069;29070;29071	29068					0.11022360785045748
KQLAVRVF	8	Unmodified	_KQLAVRVF_					0	0	0		tr|A0A553SJK2|A0A553SJK2_NIACIIron-containingalcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16940PE=4SV=1	tr|A0A553SJK2|A0A553SJK2_NIACIIron-containingalcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16940PE=4SV=1	tr|A0A553SJK2|A0A553SJK2_NIACIIron-containingalcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16940PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	480.8006896972656	2	480.803094	959.591636	-4.4906	-0.0021591	0.15627	7.5133E-05	-4.3343	-0.002084	480.8030459689351	151.04	2.008	150.08	149.7	151.71	-0.95647					103	39	4	0	0	0	0.64377	6	12875	12829;12851;12857;12875;12883;12889		54.765	26.51	1	1013500			25907	33512	21173	21200	29072;29073;29074;29075;29076;29077	29075					0.11022360785045748
KQLAVRVF	8	Unmodified	_KQLAVRVF_					0	0	0		tr|A0A553SJK2|A0A553SJK2_NIACIIron-containingalcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16940PE=4SV=1	tr|A0A553SJK2|A0A553SJK2_NIACIIron-containingalcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16940PE=4SV=1	tr|A0A553SJK2|A0A553SJK2_NIACIIron-containingalcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16940PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.8013610839844	2	480.803094	959.591636	-3.2353	-0.0015556	-1.1249	-0.00054087	-4.3603	-0.0020964	480.80242897085384	151.49	1.9682	150.06	149.63	151.6	-1.4344					128	43	5	0	0	0	0.74679	1	14958	14958		28.254	4.0515	1	1260100			25908	33512	21173	21200	29078	29078					0.11022360785045748
KQLCPAIQKL	10	Unmodified	_KQLCPAIQKL_					0	0	0		ENSG00000151065|ENST00000280665|DCP1B;nc|ENSG00000151065|Q8IZD4-2|DCP1B;ENST00000543381.5_1_12:2055374-2100299:-|nuORF	ENSG00000151065|ENST00000280665|DCP1B	ENSG00000151065|ENST00000280665|DCP1B	MULTI-MSMS	OvCa99_classI_Rep5	1	571.344482421875	2	571.341726	1140.6689	-0.55924	-0.00031952	3.3994	0.0019422	2.8401	0.0016227	571.3437173018539	54.696	1.0594	54.696	54.214	55.273	0					71	24	5	0	0	0	0.45225	1	4438	4438		60.972	13.056	1	7790200			25909	5531	21174	21201	29079	29079					0.10419210939039658
KQLDEWLK	8	Unmodified	_KQLDEWLK_					0	0	0		nc|ENSG00000111783|Q33E94-4|RFX4;ENST00000536688.5_1_12:106995054-107126892:+|nuORF;nc|ENSG00000111783|Q33E94-3|RFX4;ENSG00000111783|ENST00000392842|RFX4;nc|ENSG00000111783|Q33E94-2|RFX4	nc|ENSG00000111783|Q33E94-4|RFX4	nc|ENSG00000111783|Q33E94-4|RFX4	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.2942504882812	2	530.295299	1058.57605	-1.9405	-0.001029	-2.4894	-0.0013201	-4.4299	-0.0023492	530.293909155729	44.778	1.2913	41.739	41.514	42.805	-3.0385					71	24	4	0	0	0	0.20102	2	2240	2240;2264		124.59	14.474	1	1647600			25910	2851	21175	21202	29080;29081	29080					0.04910029477309763
KQLDSLTAR	9	Unmodified	_KQLDSLTAR_					0	0	0		ENST00000477288.5_1_6:30884740-30893984:+|nuORF;nc|ENSG00000137411|Q5ST30-3|VARS2;ENSG00000137411|ENST00000676266|VARS2;nc|ENSG00000137411|Q5ST30-4|VARS2;ENST00000473916.1_1_6:30891971-30893984:+|nuORF;nc|ENSG00000137411|Q5ST30-2|VARS2;ENST00000469358.5_1_6:30889720-30893984:+|nuORF	ENST00000477288.5_1_6:30884740-30893984:+|nuORF	ENST00000477288.5_1_6:30884740-30893984:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	516.2952270507812	2	516.29583	1030.57711	-1.0165	-0.00052483	-0.30965	-0.00015987	-1.3262	-0.0006847	516.2958083039246	26.211	1.1989	26.211	25.992	27.191	0					78	23	6	0	0	0	0.50149	1	770	770		42.396	3.59	1	11731000			25911	4581	21176	21203	29082	29082					0.06304243846238933
KQLEDGRTL	9	Unmodified	_KQLEDGRTL_					0	0	0		ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000221983|ENST00000442744|UBA52;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000399822.2_1_9:22012279-22012411:+|nuORF	ENSG00000150991|ENST00000339647|UBC	ENSG00000150991|ENST00000339647|UBC	MULTI-MSMS	OvCa9_classI_Rep2	2	530.2926635742188	2	530.293288	1058.57202	-0.57106	-0.00030283	0.21307	0.00011299	-0.35799	-0.00018984	530.2932941647349	44.621	1.194	41.912	41.603	42.797	-2.7097					53	23	3	0	0	0	0.1243	2	2549	2549;2555		90.601	10.379	1	328810			25912	5110	21177	21204	29083;29084	29083					0.04507939983614051
KQLEDGRTL	9	Unmodified	_KQLEDGRTL_					0	0	0		ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000221983|ENST00000442744|UBA52;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000399822.2_1_9:22012279-22012411:+|nuORF	ENSG00000150991|ENST00000339647|UBC	ENSG00000150991|ENST00000339647|UBC	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.2941284179688	2	530.293288	1058.57202	-1.9405	-0.001029	1.3035	0.00069126	-0.63698	-0.00033778	530.293909155729	44.778	1.2913	41.739	41.514	42.805	-3.0385					71	24	4	0	0	0	0.13504	1	2279	2279		87.696	5.4559	1	1647600			25913	5110	21177	21204	29085	29085					0.04507939983614051
KQLELDLND	9	Unmodified	_KQLELDLND_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.2930908203125	2	544.285128	1086.5557	-0.90278	-0.00049137	-0.77586	-0.00042229	-1.6786	-0.00091366	544.2848230133424	82.77	0.97648	80.087	79.832	80.808	-2.683					26	19	2	0	0	0	0.027462	1	6843	6843		39.253	12.56	1	165190			25914	8720	21178	21205	29086	29086					0.015888140268771167
KQLELDLND	9	Unmodified	_KQLELDLND_					0	0	0		nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	544.285128	1086.5557	0.12258	6.672E-05	-2.6229	-0.0014276	-2.5003	-0.0013609	544.2845285714991	81.684	1.6413	80.035	79.215	80.856	-1.6485	-0.025634	-0.00072011	NaN	39.253	94	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83147			25915	8720	21178	21205							0.015888140268771167
KQLERSRE	8	Unmodified	_KQLERSRE_					0	0	0			REV__ENST00000600677.5_1_19:6744980-6751219:+|nuORF	REV__ENST00000600677.5_1_19:6744980-6751219:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.294189453125	2	523.291079	1044.56761	-0.84528	-0.00044233	1.9848	0.0010386	1.1395	0.00059628	523.2914501614295	65.301	1.8444	61.816	61.358	63.202	-3.4854					92	37	5	0	0	0	0.35163	1	4713	4713		97.473	1.2823	1	2760200	+		25916	18740	21179	21206	29087	29087					0.04710475560705163
KQLESNKI	8	Unmodified	_KQLESNKI_					0	0	0		ENSG00000197746|ENST00000394936|PSAP;nc|ENSG00000197746|P07602-2|PSAP;nc|ENSG00000197746|P07602-3|PSAP	ENSG00000197746|ENST00000394936|PSAP	ENSG00000197746|ENST00000394936|PSAP	MULTI-MSMS	OvCa99_classI_Rep5	1	480.2795715332031	2	480.279649	958.544745	0.168	8.0686E-05	-1.4146	-0.00067941	-1.2466	-0.00059873	480.2787853578824	32.675	0.53616	32.675	32.453	32.989	0					25	10	4	0	0	0	0.55617	1	1440	1440		71.877	5.4482	1	929230			25917	8742	21180	21207	29088	29088					0.06381456443239131
KQLFAYPG	8	Unmodified	_KQLFAYPG_					0	0	0		nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA;ENST00000515096.5_1_4:151186876-151231561:-|nuORF;ENST00000503716.5_1_4:151186876-151502511:-|nuORF	nc|ENSG00000198589|P50851-2|LRBA	nc|ENSG00000198589|P50851-2|LRBA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.2356872558594	2	462.252903	922.491253	-1.4931	-0.0006902	-3.2588	-0.0015064	-4.7519	-0.0021966	462.251236482899	73.399	0.86552	70.003	69.785	70.65	-3.3961					24	17	2	0	0	0	0.028476	1	5672	5672		54.765	29.315	1	52721			25918	8832	21181	21208	29089	29089					0.02690703731366284
KQLHKLVSI	9	Unmodified	_KQLHKLVSI_					0	0	0			REV__ENST00000480065.1_1_1:222742724-222743894:-|nuORF	REV__ENST00000480065.1_1_1:222742724-222743894:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	533.3402709960938	2	533.342584	1064.67061	-5.4005	-0.0028803	1.293	0.00068962	-4.1075	-0.0021907	533.3431631989303	156.44	1.0857	156.21	155.92	157	-0.22696					71	26	4	0	0	0	0.6653	1	15909	15909		24.203	1.1603	1	260540	+		25919	26451	21182	21209	29090	29090					0.1408658801931324
KQLHPQLL	8	Unmodified	_KQLHPQLL_					0	0	0		nc|ENSG00000063660|P35052-2|GPC1;ENST00000469694.5_1_2:241381745-241403123:+|nuORF;ENSG00000063660|ENST00000264039|GPC1	nc|ENSG00000063660|P35052-2|GPC1	nc|ENSG00000063660|P35052-2|GPC1	MULTI-SECPEP	OvCa9_classI_Rep3	3	488.81341552734375	2	488.800552	975.58655	-1.093	-0.00053428	-1.3736	-0.00067142	-2.4666	-0.0012057	488.799363183821	94.406	0.25232	92.511	92.409	92.662	-1.8956					6	4	2	0	0	0	0.028476	1	6094	6094		35.201	6.9464	1	16959			25920	12348	21183	21210	29091	29091					0.09778056922436917
KQLHQLYADT	10	Unmodified	_KQLHQLYADT_					0	0	0			REV__nc|ENSG00000147099|Q9BY41-8|HDAC8	REV__nc|ENSG00000147099|Q9BY41-8|HDAC8	MULTI-SECPEP	OvCa99_classI_Rep5	1	406.1979675292969	3	406.215539	1215.62479	0.77547	0.00031501	-0.81463	-0.00033092	-0.039161	-1.5908E-05	406.21449386226567	48.333	0.29521	48.333	48.16	48.455	0					10	6	2	0	0	0	0.02661	1	3550	3550		24.232	0	1	184540	+		25921	20041	21184	21211	29092	29092					0.025598980464110355
KQLIAKKI	8	Unmodified	_KQLIAKKI_					0	0	0		ENSG00000057252|ENST00000367619|SOAT1	ENSG00000057252|ENST00000367619|SOAT1	ENSG00000057252|ENST00000367619|SOAT1	MULTI-MSMS	OvCa99_classI_Rep5	1	471.3288879394531	2	471.328945	940.643337	-0.2342	-0.00011039	0.29207	0.00013766	0.057865	2.7273E-05	471.3289225524588	35.365	0.8314	35.365	35.198	36.029	0					32	17	3	0	0	0	0.36941	1	1777	1777		94.006	0	1	535680			25922	1234	21185	21212	29093	29093					0.17064104478936315
KQLILGRIPMN	11	Unmodified	_KQLILGRIPMN_					0	0	0		ENST00000406845.1_1_21:24463107-24463425:-|nuORF	ENST00000406845.1_1_21:24463107-24463425:-|nuORF	ENST00000406845.1_1_21:24463107-24463425:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8825073242188	2	641.886832	1281.75911	-5.3554	-0.0034376	-1.2716	-0.00081624	-6.627	-0.0042538	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.69081	1	12977	12977		32.812	7.2384	1	804890			25923	11486	21186	21213	29094	29094					0.12950260267484737
KQLILGRIPMN	11	Unmodified	_KQLILGRIPMN_					0	0	0		ENST00000406845.1_1_21:24463107-24463425:-|nuORF	ENST00000406845.1_1_21:24463107-24463425:-|nuORF	ENST00000406845.1_1_21:24463107-24463425:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8829345703125	2	641.886832	1281.75911	-3.6311	-0.0023307	-2.9625	-0.0019016	-6.5935	-0.0042323	641.8847801872174	153.39	4.0845	151.94	150.68	154.77	-1.4516					420	106	6	0	0	0	0.72473	1	15362	15362		19.104	0.84144	1	809780			25924	11486	21186	21213	29095	29095					0.12950260267484737
KQLKEQQMV	9	Unmodified	_KQLKEQQMV_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;SEC61A2|p.R402G|1|0.07|ENSG00000065665|chr10:12162249-12162249|A/G|missense_variant;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1	MSMS	OvCa99_classI_Rep5	1	566.311767578125	2	566.313166	1130.61178	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.547	1	38.547	38.047	39.047	0								0	0	0	0.043201	1	2198	2198		79.713	18.741	1				25925	1242;1335;12773;14885	21187	21214	29096	29096					0.05169743662668225
KQLKKIHKKL	10	Unmodified	_KQLKKIHKKL_					0	0	0			REV__ENSG00000225830|ENST00000355832|ERCC6;REV__nc|ENSG00000225830|P0DP91|ERCC6	REV__ENSG00000225830|ENST00000355832|ERCC6	MULTI-MSMS	OvCa9_classI_Rep2	2	632.4317016601562	2	632.434807	1262.85506	-5.7395	-0.0036299	-0.067111	-4.2443E-05	-5.8066	-0.0036723	632.4345273657251	163.44	1.2114	163.21	162.72	163.93	-0.22696					106	40	3	0	0	0	1.0078	1	16617	16617		0.99688	0	1	356230	+		25926	23366;29141	21188	21215	29097	29097					0.2341477616987504
KQLKKILQNQ	10	Unmodified	_KQLKKILQNQ_					0	0	0		nc|ENSG00000132554|Q8NE09-3|RGS22;ENSG00000132554|ENST00000360863|RGS22;nc|ENSG00000132554|Q8NE09-2|RGS22;RGS22|p.S135Vfs*9|1|0.38|ENSG00000132554|chr8:100072167-100072167|T/-|frameshift_variant	nc|ENSG00000132554|Q8NE09-3|RGS22	nc|ENSG00000132554|Q8NE09-3|RGS22	MULTI-SECPEP	OvCa99_classI_Rep5	1	621.3314208984375	2	620.890429	1239.76631	-0.79271	-0.00049219	1.4472	0.00089858	0.65453	0.00040639	620.8912579602695	69.612	0.40858	69.612	69.39	69.798	0					21	9	3	0	0	0	0.027193	1	6649	6649		3.1592	0	1	288040			25927	4147	21189	21216	29098	29098					0.1560131613955491
KQLKLYKET	9	Unmodified	_KQLKLYKET_					0	0	0			REV__ENSG00000166105|ENST00000431683|GLB1L3	REV__ENSG00000166105|ENST00000431683|GLB1L3	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8432006835938	2	575.845156	1149.67576	-1.5734	-0.00090602	-1.7064	-0.00098265	-3.2798	-0.0018887	575.8439449675558	145.55	4.7888	144.12	142.78	147.57	-1.4357					360	93	6	0	0	0	0.59259	1	14299	14299		32.812	2.3088	1	565210	+		25928	21156	21190	21217	29099	29099					0.10690847091291289
KQLKRGSPY	9	Unmodified	_KQLKRGSPY_					0	0	0		ENST00000460289.5_1_2:120517896-120637673:+|nuORF;ENST00000485247.1_1_2:120517896-120640079:+|nuORF;PTPN4|p.L831Qfs*34|1|0.07|ENSG00000088179|chr2:119965578-119965603|CTAGATTTTGTTTGTCATGTACGAAA/-|frameshift_variant;ENSG00000088179|ENST00000263708|PTPN4	ENST00000460289.5_1_2:120517896-120637673:+|nuORF	ENST00000460289.5_1_2:120517896-120637673:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	538.8181762695312	2	538.81419	1075.61383	-0.33405	-0.00017999	-2.0855	-0.0011237	-2.4196	-0.0013037	538.8129348390605	23.811	0.23931	23.811	23.697	23.937	0					8	4	2	0	0	0	0.61208	1	378	378		30.504	3.8107	1	34238			25929	1782	21191	21218	29100	29100					0.07904540462800469
KQLLADIIQ	9	Unmodified	_KQLLADIIQ_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.283447265625	2	521.318774	1040.623	-1.0859	-0.00056609	3.3576	0.0017504	2.2717	0.0011843	521.320783412715	70.855	0.57131	67.399	67.106	67.677	-3.4563					15	11	2	0	0	0	0.027462	1	5365	5365		42.396	0	1	23164			25930	8118	21192	21219	29101	29101					0.10430889028475576
KQLLFSDHAV	10	Unmodified	_KQLLFSDHAV_					0	0	0		ENST00000547997.5_1_12:95650374-95694446:+|nuORF;ENST00000552660.5_1_12:95650374-95694446:+|nuORF;ENSG00000028203|ENST00000436874|VEZT;METAP2-VEZT|1|fusion;METAP2-VEZT|2|fusion	ENST00000547997.5_1_12:95650374-95694446:+|nuORF	ENST00000547997.5_1_12:95650374-95694446:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.8096923828125	2	579.319306	1156.62406	-1.3708	-0.00079412	-1.8561	-0.0010753	-3.2269	-0.0018694	579.317966130633	34.748	0.707	34.748	34.539	35.246	0					18	14	2	0	0	0	0.027147	1	1729	1729		15.642	0	1	213690			25931	1059	21193	21220	29102	29102					0.05201103397371298
KQLLPKTFG	9	Unmodified	_KQLLPKTFG_					0	0	0		ENSG00000183434|ENST00000310125|TFDP3;ENST00000465174.1_1_13:114240152-114286060:+|nuORF;ENSG00000198176|ENST00000375370|TFDP1	ENSG00000183434|ENST00000310125|TFDP3	ENSG00000183434|ENST00000310125|TFDP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.3125610351562	2	516.316035	1030.61752	-0.75242	-0.00038849	0.48934	0.00025265	-0.26308	-0.00013583	516.316098446986	66.417	0.60387	66.417	66.136	66.739	0					22	14	2	0	0	0	0.027462	1	6172	6172		34.173	2.6427	1	810130			25932	8074	21194	21221	29103	29103					0.10343210236646883
KQLLPKTFG	9	Unmodified	_KQLLPKTFG_					0	0	0		ENSG00000183434|ENST00000310125|TFDP3;ENST00000465174.1_1_13:114240152-114286060:+|nuORF;ENSG00000198176|ENST00000375370|TFDP1	ENSG00000183434|ENST00000310125|TFDP3	ENSG00000183434|ENST00000310125|TFDP3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	516.316035	1030.61752	-0.97173	-0.00050172	-1.3336	-0.00068858	-2.3054	-0.0011903	516.3139282832514	70.194	0.2961	66.713	66.442	66.738	-3.4812	0.14776	-0.0017662	NaN	60.972	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12534			25933	8074	21194	21221							0.10343210236646883
KQLLVQQLGL	10	Unmodified	_KQLLVQQLGL_					0	0	0		nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	MULTI-MSMS	OvCa9_classI_Rep4_	4	570.358154296875	2	570.360973	1138.70739	-3.6448	-0.0020789	-0.079296	-4.5227E-05	-3.7241	-0.0021241	570.3607585251723	152.95	1.1827	151.52	151.24	152.42	-1.435					78	29	4	0	0	0	0.71192	1	15123	15123		29.15	2.4566	1	189880			25934	8658	21195	21222	29104	29104					0.14358839845226612
KQLLYLMKKK	10	Unmodified	_KQLLYLMKKK_					0	0	0			REV__ENST00000501704.3_1_13:45148883-45148931:-|nuORF	REV__ENST00000501704.3_1_13:45148883-45148931:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	431.89111328125	3	431.608943	1291.805	-0.22804	-9.8425E-05	-2.6296	-0.001135	-2.8577	-0.0012334	431.607824489384	38.417	0.41199	38.417	38.207	38.619	0					13	8	2	0	0	0	0.027062	1	2164	2164		20.03	0	1	56384	+		25935	26820	21196	21223	29105	29105					0.17076905449698643
KQLNHFWEI	9	Unmodified	_KQLNHFWEI_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;IGFBP2-XRCC5|1|fusion	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	OvCa99_classI_Rep5	1	607.8219604492188	2	607.819473	1213.62439	3.179	0.0019322	-0.85019	-0.00051676	2.3288	0.0014155	607.8187179091001	89.664	0.78773	89.664	89.313	90.101	0					50	18	4	0	0	0	0.083631	1	9584	9584		101.6	31.973	1	1694600			25936	1607	21197	21224	29106	29106					0.026125231172272834
KQLNRGKPV	9	Unmodified	_KQLNRGKPV_					0	0	0		PGBD2|p.H285N|1|0.1|ENSG00000185220|chr1:248917437-248917437|C/A|missense_variant	PGBD2|p.H285N|1|0.1|ENSG00000185220|chr1:248917437-248917437|C/A|missense_variant	PGBD2|p.H285N|1|0.1|ENSG00000185220|chr1:248917437-248917437|C/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.282470703125	2	520.322183	1038.62981	0.33068	0.00017206	-2.5956	-0.0013505	-2.2649	-0.0011785	520.3202925540095	70.168	1.7463	67.598	67.311	69.058	-2.5707					77	33	4	0	0	0	0.027462	1	5572	5572		24.203	0	1	290970			25937	15493	21198	21225	29107	29107					0.11204246699708165
KQLPQYHD	8	Unmodified	_KQLPQYHD_					0	0	0			REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|130|3|sense	REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|130|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.82470703125	2	514.761623	1027.50869	-0.17539	-9.0285E-05	-0.69132	-0.00035586	-0.86671	-0.00044615	514.7611622661873	46.801	0.2192	46.801	46.719	46.938	0					7	4	2	0	0	0	0.028476	1	3344	3344		37.159	0	1	86048	+		25938	28463	21199	21226	29108	29108					-0.003960007336445415
KQLRGLNP	8	Unmodified	_KQLRGLNP_					0	0	0			REV__nc|ENSG00000275763|Q6ZTR6|ZNF516-DT	REV__nc|ENSG00000275763|Q6ZTR6|ZNF516-DT	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.2679748535156	2	463.282526	924.550499	0.93034	0.00043101	-0.98592	-0.00045676	-0.055578	-2.5748E-05	463.2819937562679	85.712	0.64458	83.066	82.848	83.493	-2.6463					18	12	2	0	0	0	0.028476	1	7215	7215		25.45	4.9683	1	35106	+		25939	29193	21200	21227	29109	29109					0.08520599745554591
KQLTELIIT	9	Unmodified	_KQLTELIIT_					0	0	0			REV__ENSG00000188107|ENST00000503581|EYS	REV__ENSG00000188107|ENST00000503581|EYS	MULTI-SECPEP	OvCa9_classI_Rep2	2	530.8173828125	2	529.826432	1057.63831	-0.15883	-8.4152E-05	1.0448	0.00055357	0.88598	0.00046942	529.826794573254	71.003	1.36	68.432	68.114	69.474	-2.5707					55	25	3	0	0	0	0.027462	1	5803	5803		21.96	0	1	189170	+		25940	22690	21201	21228	29110	29110					0.11179755825651227
KQLTKEQVI	9	Unmodified	_KQLTKEQVI_					0	0	0		tr|A0A7D6VPK3|A0A7D6VPK3_9CLOTTyrosine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=tyrSPE=3SV=1	tr|A0A7D6VPK3|A0A7D6VPK3_9CLOTTyrosine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=tyrSPE=3SV=1	tr|A0A7D6VPK3|A0A7D6VPK3_9CLOTTyrosine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=tyrSPE=3SV=1	MSMS	OvCa99_classI_Rep5	1	543.8294067382812	2	543.829506	1085.64446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.481	1	33.481	32.981	33.981	0								0	0	0	0.058381	1	1541	1541		76.774	4.8967	1				25941	34776	21202	21229	29111	29111					0.10506274057183873
KQLVETLHAAR	11	Unmodified	_KQLVETLHAAR_					0	0	0		ENSG00000151838|ENST00000537690|CCDC175	ENSG00000151838|ENST00000537690|CCDC175	ENSG00000151838|ENST00000537690|CCDC175	MULTI-MSMS	OvCa9_classI_Rep2	2	633.36865234375	2	633.369861	1264.72517	-4.5141	-0.0028591	3.4388	0.002178	-1.0753	-0.00068108	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.72491	1	15452	15452		16.717	0.71061	1	369460			25942	5588	21203	21230	29112	29112					0.10339555100085818
KQMEQVAQFL	10	Unmodified	_KQMEQVAQFL_					0	0	0		ENSG00000149591|ENST00000392951|TAGLN;ENST00000533863.1_2_11:117074025-117074655:+|nuORF	ENSG00000149591|ENST00000392951|TAGLN	ENSG00000149591|ENST00000392951|TAGLN	MULTI-MSMS	OvCa99_classI_Rep5	1	611.3200073242188	2	611.318448	1220.62234	2.8472	0.0017406	-0.47706	-0.00029163	2.3702	0.0014489	611.3179167755338	97.211	0.85709	97.211	96.923	97.78	0					62	19	5	0	0	0	0.0512	1	10684	10684		128.6	0	1	5651400			25943	5478	21204	21231	29113	29113					0.020857263171137674
KQMLSTFFI	9	Unmodified	_KQMLSTFFI_					0	0	0			REV__ENSG00000134716|ENST00000371204|CYP2J2	REV__ENSG00000134716|ENST00000371204|CYP2J2	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.7626342773438	2	557.801903	1113.58925	0.58754	0.00032773	2.6534	0.0014801	3.241	0.0018078	557.8034268041982	58.033	0.83802	58.033	57.775	58.613	0					23	19	2	0	0	0	0.027449	1	4884	4884		60.294	26.121	1	555870	+		25944	19223	21205	21232	29114	29114					0.03700144265076233
KQMYHLLL	8	Unmodified	_KQMYHLLL_					0	0	0			REV__tr|A0A553SK20|A0A553SK20_NIACIFxsAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_17815PE=4SV=1	REV__tr|A0A553SK20|A0A553SK20_NIACIFxsAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_17815PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.7655639648438	2	523.296788	1044.57902	-1.1305	-0.00059161	-2.2797	-0.001193	-3.4102	-0.0017846	523.2955363064864	44.418	0.75455	44.418	43.995	44.75	0					29	16	2	0	0	0	0.028476	1	2968	2968		21.702	0	1	1682100	+		25945	30067	21206	21233	29115	29115					0.0585158133051209
KQNEIILRA	9	Unmodified	_KQNEIILRA_					0	0	0		nc|ENSG00000166750|Q08AF3-2|SLFN5;ENSG00000166750|ENST00000299977|SLFN5	nc|ENSG00000166750|Q08AF3-2|SLFN5	nc|ENSG00000166750|Q08AF3-2|SLFN5	MULTI-MSMS	OvCa99_classI_Rep5	1	542.8281860351562	2	542.827298	1083.64004	-0.49712	-0.00026985	0.74922	0.0004067	0.2521	0.00013685	542.8274837476496	55.086	0.67536	55.086	54.805	55.48	0					46	15	4	0	0	0	0.029147	2	4472	4472;4492		136.27	29.261	1	4426000			25946	6707	21207	21234	29116;29117	29116					0.10156809634281672
KQNKKKVE	8	Unmodified	_KQNKKKVE_					0	0	0		ENSG00000108468|ENST00000225603|CBX1	ENSG00000108468|ENST00000225603|CBX1	ENSG00000108468|ENST00000225603|CBX1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.7649230957031	2	501.308741	1000.60293	-0.040706	-2.0406E-05	-0.1721	-8.6276E-05	-0.21281	-0.00010668	501.30851575394985	31.081	0.38377	31.081	30.881	31.264	0					18	7	4	0	0	0	0.028476	1	1254	1254		53.351	0	1	182210			25947	2656	21208	21235	29118	29118					0.10265138088516323
KQNKQKKP	8	Unmodified	_KQNKQKKP_					0	0	0		nc|ENSG00000181378|Q6ZU64-3|CFAP65	nc|ENSG00000181378|Q6ZU64-3|CFAP65	nc|ENSG00000181378|Q6ZU64-3|CFAP65	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.8067321777344	2	499.808908	997.603263	-0.40135	-0.0002006	-1.0232	-0.00051141	-1.4246	-0.000712	499.8083629765502	57.998	0.4041	54.653	54.495	54.899	-3.3449					10	7	2	0	0	0	0.028476	1	3820	3820		31.955	0	1	19762			25948	15206	21209	21236	29119	29119					0.10436557808372982
KQNKQKKP	8	Unmodified	_KQNKQKKP_					0	0	0		nc|ENSG00000181378|Q6ZU64-3|CFAP65	nc|ENSG00000181378|Q6ZU64-3|CFAP65	nc|ENSG00000181378|Q6ZU64-3|CFAP65	MULTI-MATCH	OvCa9_classI_Rep2	2		2	499.808908	997.603263	-0.98531	-0.00049247	0.067107	3.3541E-05	-0.91821	-0.00045893	499.808925324254	57.292	0.54526	54.5	54.178	54.724	-2.792	-0.07627	0.00058812	NaN	30.504	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8225.7			25949	15206	21209	21236							0.10436557808372982
KQNQDDFFG	9	Unmodified	_KQNQDDFFG_					0	0	0			REV__tr|A0A553SQ34|A0A553SQ34_NIACIDUF1027domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16760PE=4SV=1	REV__tr|A0A553SQ34|A0A553SQ34_NIACIDUF1027domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16760PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.8553466796875	2	549.74617	1097.47779	-0.033202	-1.8253E-05	-1.6275	-0.00089471	-1.6607	-0.00091297	549.7452593145132	62.792	0.47751	62.792	62.581	63.058	0					22	11	3	0	0	0	0.027426	1	5651	5651		63.306	17.354	1	1367500	+		25950	30602	21210	21237	29120	29120					-0.06705198838540127
KQNQLNMQRQ	10	Unmodified	_KQNQLNMQRQ_					0	0	0			REV__ENST00000354759.7_1_10:35467826-35467865:+|nuORF	REV__ENST00000354759.7_1_10:35467826-35467865:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	429.89202880859375	3	429.891061	1286.65135	-0.20785	-8.9353E-05	2.8886	0.0012418	2.6808	0.0011525	429.89229437503934	41.659	2.1219	38.678	38.336	40.458	-2.9804					92	40	4	0	0	0	0.71192	1	1887	1887		20.837	0	1	342190	+		25951	24741	21211	21238	29121	29121					0.019492636660970675
KQNRKLLLQ	9	Unmodified	_KQNRKLLLQ_					0	0	0		IZUMO2|p.R213K|1|0.11|ENSG00000161652|chr19:50152637-50152637|C/T|missense_variant	IZUMO2|p.R213K|1|0.11|ENSG00000161652|chr19:50152637-50152637|C/T|missense_variant	IZUMO2|p.R213K|1|0.11|ENSG00000161652|chr19:50152637-50152637|C/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.3174438476562	2	570.864215	1139.71388	-1.0028	-0.00057244	4.386	0.0025038	3.3833	0.0019314	570.866559436838	34.312	0.47559	34.312	33.969	34.444	0					15	9	2	0	0	0	0.027418	1	1603	1603		68.787	3.3214	1	33434			25952	14512	21212	21239	29122	29122					0.1496077779661391
KQNVAAHERL	10	Unmodified	_KQNVAAHERL_					0	0	0			REV__ENST00000603621.1_1_6:112405349-112408468:-|nuORF	REV__ENST00000603621.1_1_6:112405349-112408468:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	583.329833984375	2	583.325454	1164.63635	0.4818	0.00028105	4.0079	0.0023379	4.4897	0.0026189	583.3276725011998	158.76	1.379	158.76	157.91	159.28	0					43	28	3	0	0	0	0.45822	1	18608	18608		60.118	0.18749	1	379480	+		25953	16957	21213	21240	29123	29123					0.06062139860409843
KQPFAALPAF	10	Unmodified	_KQPFAALPAF_					0	0	0		ENST00000608357.1_1_1:113060547-113060847:-|nuORF	ENST00000608357.1_1_1:113060547-113060847:-|nuORF	ENST00000608357.1_1_1:113060547-113060847:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.2861938476562	2	545.30821	1088.60187	1.8935	0.0010325	0.55627	0.00030334	2.4498	0.0013359	545.3083284613602	133.84	0.94003	133.84	133.53	134.47	0					32	19	2	0	0	0	0.027056	1	15624	15624		27.882	0	1	347920			25954	14295	21214	21241	29124	29124					0.061109237195978494
KQPTHESRI	9	Unmodified	_KQPTHESRI_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	OvCa99_classI_Rep5	1	548.2981567382812	2	548.298904	1094.58326	-0.82629	-0.00045305	-0.15118	-8.289E-05	-0.97747	-0.00053594	548.2992397223545	25.724	0.44856	25.724	25.594	26.042	0					16	8	3	0	0	0	0.48047	1	608	608		44.377	3.599	1	117140			25955	7620	21215	21242	29125	29125					0.03974762077768901
KQPYIKIDT	9	Unmodified	_KQPYIKIDT_					0	0	0			REV__nc|ENSG00000165240|Q04656-5|ATP7A	REV__nc|ENSG00000165240|Q04656-5|ATP7A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.2216796875	2	553.316232	1104.61791	-1.0357	-0.00057309	-0.54482	-0.00030146	-1.5806	-0.00087455	553.3165321334504	124.73	0.93758	123.34	122.92	123.86	-1.3908					30	17	3	0	0	0	0.027462	1	11829	11829		23.042	0	1	37625	+		25956	21072	21216	21243	29126	29126					0.0697858516582528
KQPYIKIDT	9	Unmodified	_KQPYIKIDT_					0	0	0			REV__nc|ENSG00000165240|Q04656-5|ATP7A	REV__nc|ENSG00000165240|Q04656-5|ATP7A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	553.316232	1104.61791	1.0137	0.00056088	-1.3826	-0.00076504	-0.36897	-0.00020416	553.3154471084858	124.32	0.88477	123.29	122.97	123.86	-1.0377	-0.026676	-0.00050733	NaN	23.042	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40823	+		25957	21072	21216	21243							0.0697858516582528
KQQAAQAAAP	10	Unmodified	_KQQAAQAAAP_					0	0	0			REV__ENSG00000175592|ENST00000312562|FOSL1	REV__ENSG00000175592|ENST00000312562|FOSL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.80133056640625	2	492.267073	982.519593	-0.71252	-0.00035075	-0.92324	-0.00045448	-1.6358	-0.00080523	492.26553138726496	44.55	0.26551	44.55	44.44	44.706	0					6	5	2	0	0	0	0.026915	1	3019	3019		20.947	0	1	48655	+		25958	21906	21217	21244	29127	29127					0.027634016406523187
KQQAFDLDK	9	Unmodified	_KQQAFDLDK_					0	0	0			REV__ENST00000598240.1_1_19:19105804-19136912:-|nuORF	REV__ENST00000598240.1_1_19:19105804-19136912:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	546.7859497070312	2	546.787838	1091.56112	0.94001	0.00051398	-3.7276	-0.0020382	-2.7876	-0.0015242	546.7855253614701	41.767	1.6768	39.057	38.684	40.361	-2.7097					63	33	3	0	0	0	0.56189	1	2201	2201		36.447	3.6343	1	129370	+		25959	28008	21218	21245	29128	29128					0.01900537609321873
KQQFDKILK	9	Unmodified	_KQQFDKILK_					0	0	0			REV__nc|ENSG00000158528|Q9ULJ8|PPP1R9A	REV__nc|ENSG00000158528|Q9ULJ8|PPP1R9A	MULTI-MSMS	OvCa99_classI_Rep5	1	574.3466796875	2	574.345323	1146.67609	-0.5314	-0.00030521	0.72267	0.00041506	0.19127	0.00010986	574.3458026494483	53.091	0.55928	53.091	52.873	53.432	0					37	12	4	0	0	0	0.075543	1	4195	4195		104.06	2.8042	1	2018700	+		25960	20570	21219	21246	29129	29129					0.10862266811136578
KQQFDKILK	9	Unmodified	_KQQFDKILK_					0	0	0			REV__nc|ENSG00000158528|Q9ULJ8|PPP1R9A	REV__nc|ENSG00000158528|Q9ULJ8|PPP1R9A	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	574.345323	1146.67609	-0.5314	-0.00030521	0.72267	0.00041506	0.19127	0.00010986	574.3458026494483	53.091	0.55928	53.091	52.873	53.432	0	0	0	NaN	104.06	37	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2018700	+		25961	20570	21219	21246							0.10862266811136578
KQQFKKPK	8	Unmodified	_KQQFKKPK_					0	0	0			REV__ENST00000341170.4_1_9:100388110-100389693:-|nuORF	REV__ENST00000341170.4_1_9:100388110-100389693:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.2855224609375	2	516.321651	1030.62875	-1.0155	-0.00052435	-2.4697	-0.0012752	-3.4852	-0.0017995	516.3204148839104	34.998	0.28468	34.998	34.864	35.149	0					8	5	2	0	0	0	0.028476	1	1742	1742		8.2313	0	1	44095	+		25962	24633	21220	21247	29130	29130					0.1146603233080441
KQQGVNEMV	9	Unmodified	_KQQGVNEMV_					0	0	0			REV__ENSG00000004700|ENST00000444129|RECQL	REV__ENSG00000004700|ENST00000444129|RECQL	MULTI-MSMS	OvCa99_classI_Rep5	1	516.7593994140625	2	516.760766	1031.50698	-0.49801	-0.00025735	-3.0298	-0.0015657	-3.5278	-0.001823	516.7590717978939	41.084	0.44482	41.084	40.795	41.24	0					20	9	3	0	0	0	0.51865	1	2539	2539		40.778	6.6056	1	360030	+		25963	16379	21221	21248	29131	29131					-0.007513778138900307
KQQGVNEMV	9	Unmodified	_KQQGVNEMV_					0	0	0			REV__ENSG00000004700|ENST00000444129|RECQL	REV__ENSG00000004700|ENST00000444129|RECQL	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	516.760766	1031.50698	-0.49801	-0.00025735	-3.0298	-0.0015657	-3.5278	-0.001823	516.7590717978939	41.084	0.44482	41.084	40.795	41.24	0	0	0	NaN	40.778	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	360030	+		25964	16379	21221	21248							-0.007513778138900307
KQQKGEFAI	9	Unmodified	_KQQKGEFAI_					0	0	0		ENSG00000005020|ENST00000345317|SKAP2;CHN2-SKAP2|1|fusion;ENST00000468712.5_1_7:26766479-26894483:-|nuORF	ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	MULTI-MSMS	OvCa99_classI_Rep5	1	524.7938232421875	2	524.792924	1047.57129	-0.68926	-0.00036172	0.099327	5.2126E-05	-0.58993	-0.00030959	524.7929251932062	48.697	0.96073	48.697	48.412	49.373	0					64	21	5	0	0	0	0.049969	2	3581	3581;3605		118.74	8.6232	1	7427900			25965	235	21222	21249	29132;29133	29132					0.049411453345555856
KQQLQEQPLK	10	Unmodified	_KQQLQEQPLK_					0	0	0		nc|ENSG00000166049|Q8IV76-2|PASD1;ENST00000464219.1_1_X:150770025-150841134:+|nuORF;ENSG00000166049|ENST00000370357|PASD1	nc|ENSG00000166049|Q8IV76-2|PASD1	nc|ENSG00000166049|Q8IV76-2|PASD1	MULTI-MSMS	OvCa99_classI_Rep5	1	620.3624877929688	2	620.356419	1238.69829	1.8803	0.0011665	-0.30452	-0.00018891	1.5758	0.00097756	620.3557659265313	77.17	0.91465	77.17	76.799	77.714	0					36	21	3	0	0	0	0.71173	1	7796	7796		29.17	1.2878	1	276140			25966	6632	21223	21250	29134	29134					0.08848446488900663
KQQMAQEYRE	10	Unmodified	_KQQMAQEYRE_					0	0	0		ENST00000399764.3_1_9:34922653-34922707:-|nuORF	ENST00000399764.3_1_9:34922653-34922707:-|nuORF	ENST00000399764.3_1_9:34922653-34922707:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	437.54498291015625	3	437.543438	1309.60848	0.14744	6.4513E-05	2.6268	0.0011494	2.7743	0.0012139	437.5444898560607	41.9	0.5615	41.9	41.681	42.242	0					27	12	4	0	0	0	0.67987	1	2652	2652		32.751	1.1163	1	469360			25967	11399	21224	21251	29135	29135					-0.033935511820118336
KQQQQQQFV	9	Unmodified	_KQQQQQQFV_					0	0	0		ENST00000503853.1_1_5:176733373-176733568:+|nuORF;nc|ENSG00000169230|Q9Y255-2|PRELID1;ENSG00000169230|ENST00000303204|PRELID1	ENST00000503853.1_1_5:176733373-176733568:+|nuORF	ENST00000503853.1_1_5:176733373-176733568:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	581.3035888671875	2	581.304187	1160.59382	-1.1815	-0.00068681	0.70397	0.00040922	-0.47754	-0.00027759	581.3045483991458	44.329	1.025	44.329	43.952	44.977	0					53	22	4	0	0	0	0.012034	1	2992	2992		162.31	61.053	1	3267100			25968	6991	21225	21252	29136	29136					0.01994744732178333
KQQQQRLSH	9	Unmodified	_KQQQQRLSH_					0	0	0			REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|85|2|sense	REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|85|2|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	576.8154296875	2	576.815253	1151.61595	2.8486	0.0016431	-2.9341	-0.0016924	-0.085567	-4.9356E-05	576.8135000601841	25.468	0.7966	22.758	22.579	23.376	-2.7097					36	18	3	0	0	0	0.56889	1	252	252		35.618	0	1	58707	+		25969	28473	21226	21253	29137	29137					0.04620969200618674
KQQTIPLKK	9	Unmodified	_KQQTIPLKK_					0	0	0		ENSG00000152240|ENST00000282058|HAUS1;nc|ENSG00000152240|Q96CS2-2|HAUS1;ENST00000439908.1_1_X:18884431-18884560:+|nuORF	ENSG00000152240|ENST00000282058|HAUS1	ENSG00000152240|ENST00000282058|HAUS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.2825927734375	2	542.347866	1082.68118	-0.37715	-0.00020455	0.086629	4.6983E-05	-0.29053	-0.00015757	542.3477380813555	33.508	0.44471	33.508	33.236	33.681	0					28	8	5	0	0	0	0.027462	1	1565	1565		41.427	3.6151	1	294010			25970	5614	21227	21254	29138	29138					0.14314570673764138
KQRAQEALL	9	Unmodified	_KQRAQEALL_					0	0	0		PLIN3|p.Q335Lfs*60|1|0.19|ENSG00000105355|chr19:4839495-4839496|-/CTGGAGT|frameshift_variant;nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3;nc|ENSG00000105355|O60664-2|PLIN3	PLIN3|p.Q335Lfs*60|1|0.19|ENSG00000105355|chr19:4839495-4839496|-/CTGGAGT|frameshift_variant	PLIN3|p.Q335Lfs*60|1|0.19|ENSG00000105355|chr19:4839495-4839496|-/CTGGAGT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	528.8109741210938	2	528.811648	1055.60874	-1.4143	-0.00074789	1.0674	0.00056444	-0.34691	-0.00018345	528.8120681576424	43.931	0.96513	43.931	43.608	44.573	0					41	21	4	0	0	0	0.1944	1	2929	2929		77.318	13.11	1	1875300			25971	2444	21228	21255	29139	29139					0.08316236600194316
KQREFESRL	9	Unmodified	_KQREFESRL_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA;ENST00000496738.5_1_1:156104631-156105741:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	OvCa99_classI_Rep5	1	596.8253784179688	2	596.825286	1191.63602	-0.34519	-0.00020602	0.15169	9.0531E-05	-0.1935	-0.00011549	596.8253602120336	38.417	1.1688	38.417	38.207	39.376	0					59	25	5	0	0	0	0.2077	1	2172	2172		75.043	5.4157	1	3016700			25972	6091	21229	21256	29140	29140					0.047867201405551896
KQRHKISSSVL	11	Unmodified	_KQRHKISSSVL_					0	0	0		ENST00000464585.1_1_3:51741837-51742137:+|nuORF	ENST00000464585.1_1_3:51741837-51742137:+|nuORF	ENST00000464585.1_1_3:51741837-51742137:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.881591796875	2	641.883136	1281.75172	-3.6311	-0.0023307	2.7968	0.0017952	-0.8343	-0.00053552	641.8847801872174	153.39	4.0845	151.94	150.68	154.77	-1.4516					420	106	6	0	0	0	0.71498	1	15097	15097		24.519	0.99649	1	809780			25973	12255	21230	21257	29141	29141					0.12211243991418996
KQRIAEETI	9	Unmodified	_KQRIAEETI_					0	0	0		ENSG00000145945|ENST00000648326|FAM50B	ENSG00000145945|ENST00000648326|FAM50B	ENSG00000145945|ENST00000648326|FAM50B	MULTI-MSMS	OvCa99_classI_Rep5	1	544.30908203125	2	544.308938	1086.60332	-0.34884	-0.00018988	-0.61917	-0.00033702	-0.96801	-0.0005269	544.3087269554139	44.774	0.71707	44.774	44.528	45.245	0					50	15	5	0	0	0	0.059253	1	3048	3048		113.41	6.4041	1	1715000			25974	5256	21231	21258	29142	29142					0.06348513017701407
KQRIAEETI	9	Unmodified	_KQRIAEETI_					0	0	0		ENSG00000145945|ENST00000648326|FAM50B	ENSG00000145945|ENST00000648326|FAM50B	ENSG00000145945|ENST00000648326|FAM50B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	544.308938	1086.60332	-0.92498	-0.00050347	-0.5362	-0.00029186	-1.4612	-0.00079533	544.3092275985255	47.559	0.3966	44.849	44.637	45.034	-2.7097	0.032381	-0.00018118	NaN	113.41	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22027			25975	5256	21231	21258							0.06348513017701407
KQRIAEETI	9	Unmodified	_KQRIAEETI_					0	0	0		ENSG00000145945|ENST00000648326|FAM50B	ENSG00000145945|ENST00000648326|FAM50B	ENSG00000145945|ENST00000648326|FAM50B	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	544.308938	1086.60332	-0.25831	-0.0001406	0.14828	8.0707E-05	-0.11003	-5.9891E-05	544.3087504898292	47.934	0.50863	44.826	44.581	45.09	-3.1077	0.0099746	0.00056396	NaN	113.41	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76182			25976	5256	21231	21258							0.06348513017701407
KQRIIDKLEV	10	Unmodified	_KQRIIDKLEV_					0	0	0			REV__nc|ENSG00000173230|Q14789|GOLGB1	REV__nc|ENSG00000173230|Q14789|GOLGB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.5906677246094	3	414.590717	1240.75032	0.92323	0.00038276	0.25554	0.00010595	1.1788	0.00048871	414.5907458901833	32.76	2.0475	30.065	29.544	31.591	-2.6954					114	43	4	0	0	0	0.61634	1	782	782		40.058	0.18502	1	215500	+		25977	21758	21232	21259	29143	29143					0.13957609902649892
KQRKATIE	8	Unmodified	_KQRKATIE_					0	0	0			REV__ENST00000606893.5_1_6:110501354-110532119:+|nuORF	REV__ENST00000606893.5_1_6:110501354-110532119:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.2918701171875	2	487.293091	972.571629	-0.41955	-0.00020444	0.51677	0.00025182	0.09722	4.7375E-05	487.29330176490924	144.21	0.93372	142.77	142.48	143.41	-1.4357					30	17	2	0	0	0	0.75661	1	14124	14124		19.36	0	1	39708	+		25978	21375	21233	21260	29144	29144					0.08424565054428967
KQRLCFKTA	9	Unmodified	_KQRLCFKTA_					0	0	0			REV__nc|ENSG00000189056|P78509-3|RELN	REV__nc|ENSG00000189056|P78509-3|RELN	MULTI-MSMS	OvCa9_classI_Rep2	2	547.8077392578125	2	547.810593	1093.60663	-0.63286	-0.00034669	-2.5955	-0.0014218	-3.2284	-0.0017685	547.8089203979869	48.592	1.4896	45.831	45.28	46.769	-2.7603					73	29	4	0	0	0	0.56889	1	3049	3049		35.618	10.044	1	224700	+		25979	22758	21234	21261	29145	29145					0.0635748459073966
KQRLSKVV	8	Unmodified	_KQRLSKVV_					0	0	0		ENST00000439215.1_1_1:43369124-43369580:+|nuORF;ENST00000481365.5_1_22:18080958-18102283:-|nuORF;nc|ENSG00000131100|P36543-2|ATP6V1E1;ENSG00000131100|ENST00000253413|ATP6V1E1;ENST00000484653.5_1_22:18083848-18102283:-|nuORF	ENST00000439215.1_1_1:43369124-43369580:+|nuORF	ENST00000439215.1_1_1:43369124-43369580:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	479.31365966796875	2	479.313826	956.613099	0.16762	8.0342E-05	-0.99518	-0.000477	-0.82756	-0.00039666	479.3133430575794	31.633	0.79422	31.633	31.41	32.204	0					42	15	5	0	0	0	0.57734	1	1312	1312		68.787	7.8149	1	2911600			25980	4044	21235	21262	29146	29146					0.13305745813750036
KQRPASSEK	9	Unmodified	_KQRPASSEK_					0	0	0		DIDO1|p.E134Q|1|0.24|ENSG00000101191|chr20:62911213-62911213|C/G|missense_variant	DIDO1|p.E134Q|1|0.24|ENSG00000101191|chr20:62911213-62911213|C/G|missense_variant	DIDO1|p.E134Q|1|0.24|ENSG00000101191|chr20:62911213-62911213|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7866821289062	2	515.78563	1029.55671	0.6162	0.00031783	3.5992	0.0018564	4.2154	0.0021742	515.7872216200942	34.731	1.4032	31.943	31.648	33.051	-2.7881					67	27	4	0	0	0	0.59259	1	1097	1097		32.812	2.4947	1	298250			25981	736	21236	21263	29147	29147					0.04311073186431713
KQRQEARKRLL	11	Unmodified	_KQRQEARKRLL_					0	0	0		ENST00000489701.5_1_20:35154375-35155431:+|nuORF;SLC3A2-DLGAP4|1|fusion;nc|ENSG00000080845|Q9Y2H0-3|DLGAP4;nc|ENSG00000080845|Q9Y2H0-1|DLGAP4;ENSG00000080845|ENST00000339266|DLGAP4	ENST00000489701.5_1_20:35154375-35155431:+|nuORF	ENST00000489701.5_1_20:35154375-35155431:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.9615783691406	3	475.963548	1424.86881	-1.6328	-0.00077717	-4.0232	-0.0019149	-5.656	-0.0026921	475.9615468309244	107.77	2.2527	105.89	105.54	107.79	-1.8785					122	44	4	0	0	0	0.7252	1	9891	9891		12.957	0.52465	1	542170			25982	1645	21237	21264	29148	29148					0.1733740193101312
KQRQSQKY	8	Unmodified	_KQRQSQKY_					0	0	0			REV__L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|190|3|sense	REV__L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|190|3|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.2516479492188	2	533.293622	1064.57269	-0.084479	-4.5052E-05	0.36934	0.00019696	0.28486	0.00015191	533.2936889414432	127.13	1.039	126.89	126.54	127.58	-0.2359					33	20	2	0	0	0	0.028476	1	12474	12474		23.042	3.0457	1	49069	+		25983	28346	21238	21265	29149	29149					0.04298779423334054
KQRSLLPRR	9	Unmodified	_KQRSLLPRR_					0	0	0			REV__nc|ENSG00000144406|Q8N2C7-7|UNC80	REV__nc|ENSG00000144406|Q8N2C7-7|UNC80	MULTI-MSMS	OvCa9_classI_Rep2	2	577.3673095703125	2	577.367456	1152.72036	-5.5665	-0.0032139	4.4712	0.0025815	-1.0953	-0.0006324	577.369928690125	160.74	1.397	160.51	160.13	161.53	-0.22696					95	27	5	0	0	0	0.61208	1	16370	16370		30.504	5.9844	1	1195800	+		25984	19910	21239	21266	29150	29150					0.1501071574798516
KQRVLVYV	8	Unmodified	_KQRVLVYV_					0	0	0			REV__FAR1|p.G252Vfs*27|1|0.15|ENSG00000197601|chr11:13711794-13711794|G/-|frameshift_variant	REV__FAR1|p.G252Vfs*27|1|0.15|ENSG00000197601|chr11:13711794-13711794|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	502.8135681152344	2	502.816202	1003.61785	-5.7843	-0.0029085	1.4056	0.00070674	-4.3788	-0.0022017	502.8168335130942	153.97	1.772	152.96	152.62	154.39	-1.0076					110	37	4	0	0	0	0.74679	1	13171	13171		28.254	1.4582	1	860080	+		25985	22939	21240	21267	29151	29151					0.11618629956524273
KQRVWDWVIV	10	Unmodified	_KQRVWDWVIV_					0	0	0			REV__ENSG00000226372|ENST00000441525|DCAF8L1	REV__ENSG00000226372|ENST00000441525|DCAF8L1	MULTI-MSMS	OvCa9_classI_Rep4_	4	443.58575439453125	3	443.587307	1327.74009	-0.26653	-0.00011823	-2.649	-0.0011751	-2.9156	-0.0012933	443.586126734505	20.222	1.1246	18.883	18.689	19.813	-1.3386					60	23	4	0	0	0	0.66944	1	22	22		33.922	4.3709	1	137320	+		25986	23371	21241	21268	29152	29152					0.08933046968058989
KQSAHKPQP	9	Unmodified	_KQSAHKPQP_					0	0	0			REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.7633056640625	2	510.78289	1019.55123	0.123	6.2826E-05	-0.61417	-0.00031371	-0.49118	-0.00025088	510.782651810681	31.676	0.29787	31.676	31.46	31.757	0					7	5	2	0	0	0	0.027462	1	1310	1310		37.159	8.9048	1	37966	+		25987	19243	21242	21269	29153	29153					0.04223394394614388
KQSGDDRIHN	10	Unmodified	_KQSGDDRIHN_					0	0	0		tr|A0A553SQV6|A0A553SQV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07360PE=4SV=1	tr|A0A553SQV6|A0A553SQV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07360PE=4SV=1	tr|A0A553SQV6|A0A553SQV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07360PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	585.3501586914062	2	585.286525	1168.5585	-1.3507	-0.00079057	0.5204	0.00030458	-0.83033	-0.00048598	585.2873327654784	72.994	0.1964	70.506	70.432	70.628	-2.4873					5	3	2	0	0	0	0.027056	1	3511	3511		27.882	10.517	1	13182			25988	34202	21243	21270	29154	29154					-0.019039177956074127
KQSGDDRIHN	10	Unmodified	_KQSGDDRIHN_					0	0	0		tr|A0A553SQV6|A0A553SQV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07360PE=4SV=1	tr|A0A553SQV6|A0A553SQV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07360PE=4SV=1	tr|A0A553SQV6|A0A553SQV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07360PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	585.286525	1168.5585	-1.4091	-0.00082475	-2.2527	-0.0013185	-3.6618	-0.0021432	585.2853797605559	73.663	0.33853	70.267	70.124	70.462	-3.3961	-0.11986	-0.0014407	NaN	40.778	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23538			25989	34202	21243	21270							-0.019039177956074127
KQSNKLHVLA	10	Unmodified	_KQSNKLHVLA_					0	0	0			REV__ENSG00000163217|ENST00000295379|BMP10	REV__ENSG00000163217|ENST00000295379|BMP10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	569.80126953125	2	569.340572	1136.66659	0.60932	0.00034691	-1.6365	-0.00093173	-1.0272	-0.00058482	569.3394782540703	38.436	1.0911	35.509	35.354	36.445	-2.9264					35	21	2	0	0	0	0.026891	1	1520	1520		39.253	0	1	51215	+		25990	20817	21244	21271	29155	29155					0.10372498525612173
KQSPPIVKI	9	Unmodified	_KQSPPIVKI_					0	0	0		ENST00000506102.5_1_3:125725861-125741959:-|nuORF;ENST00000512557.5_1_3:125725252-125741959:-|nuORF;nc|ENSG00000114544|Q96GZ6-8|SLC41A3;nc|ENSG00000114544|Q96GZ6-6|SLC41A3;nc|ENSG00000114544|Q96GZ6-7|SLC41A3;nc|ENSG00000114544|Q96GZ6-4|SLC41A3;nc|ENSG00000114544|Q96GZ6-3|SLC41A3;nc|ENSG00000114544|Q96GZ6-5|SLC41A3;ENSG00000114544|ENST00000360370|SLC41A3;nc|ENSG00000114544|Q96GZ6-2|SLC41A3;nc|ENSG00000114544|Q96GZ6|SLC41A3	ENST00000506102.5_1_3:125725861-125741959:-|nuORF	ENST00000506102.5_1_3:125725861-125741959:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	505.3253479003906	2	505.32386	1008.63317	-0.26524	-0.00013403	0.036016	1.82E-05	-0.22922	-0.00011583	505.32373805117857	60.218	1.1533	60.218	59.918	61.071	0					67	27	4	0	0	0	0.035142	1	5249	5249		131.03	33.559	1	7742600			25991	3027	21245	21272	29156	29156					0.12919496753715976
KQSRTGSIVL	10	Unmodified	_KQSRTGSIVL_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25246445-25268811:+|nuORF	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MULTI-MSMS	OvCa99_classI_Rep5	1	544.82861328125	2	544.824755	1087.63496	1.7075	0.0009303	4.2054	0.0022912	5.9129	0.0032215	544.8267498499578	125.99	0.9174	125.99	125.45	126.37	0					39	19	3	0	0	0	0.55359	1	14585	14585		47.657	1.7054	1	172600			25992	5360	21246	21273	29157	29157					0.09464505771666154
KQSSPNYH	8	Unmodified	_KQSSPNYH_					0	0	0		ENSG00000118985|ENST00000237853|ELL2;nc|ENSG00000118985|O00472-2|ELL2	ENSG00000118985|ENST00000237853|ELL2	ENSG00000118985|ENST00000237853|ELL2	MSMS	OvCa9_classI_Rep3	3	480.73272705078125	2	480.730323	959.446094	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.959	1	50.761	50.261	51.261	-3.1978								0	0	0	0.30129	1	1344	1344		19.36	0	1				25993	3336	21247	21274	29158	29158					-0.035251468018145715
KQSSVAEEV	9	Unmodified	_KQSSVAEEV_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	OvCa99_classI_Rep5	1	488.7508850097656	2	488.750921	975.48729	-0.82224	-0.00040187	0.9195	0.00044941	0.097264	4.7538E-05	488.75121574191	42.22	0.94479	42.22	41.982	42.926	0					40	21	3	0	0	0	0.094616	1	2702	2702		98.629	21.312	1	1032900			25994	2033	21248	21275	29159	29159					-0.0014343055298695617
KQSVPAHFV	9	Unmodified	_KQSVPAHFV_					0	0	0		nc|ENSG00000166278|P06681-3|C2;ENSG00000166278|ENST00000299367|C2;ENST00000486124.5_1_6:31905151-31913001:+|nuORF;nc|ENSG00000166278|P06681-2|C2	nc|ENSG00000166278|P06681-3|C2	nc|ENSG00000166278|P06681-3|C2	MULTI-MSMS	OvCa99_classI_Rep5	1	506.7828674316406	2	506.782359	1011.55016	0.19847	0.00010058	-0.39418	-0.00019976	-0.19571	-9.918E-05	506.7820037003358	52.744	0.69411	52.744	52.478	53.172	0					34	15	3	0	0	0	0.19758	1	4160	4160		76.774	14.667	1	1274800			25995	6661	21249	21276	29160	29160					0.04485180025710633
KQSYLTVWF	9	Unmodified	_KQSYLTVWF_					0	0	0			REV__ENST00000448876.5_1_3:185010146-185010218:+|nuORF	REV__ENST00000448876.5_1_3:185010146-185010218:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	585.3515014648438	2	586.310949	1170.60735	-0.66538	-0.00039012	4.386	0.0025715	3.7206	0.0021814	586.3134888021922	74.763	0.62807	71.532	71.192	71.82	-3.2308					17	12	2	0	0	0	0.027462	1	5854	5854		32.812	8.6097	1	26616	+		25996	25937	21250	21277	29161	29161					0.02886602511421188
KQTAKNPVQ	9	Unmodified	_KQTAKNPVQ_					0	0	0			REV__ENST00000348335.6_1_17:3788988-3796337:-|nuORF	REV__ENST00000348335.6_1_17:3788988-3796337:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.29339599609375	2	507.290548	1012.56654	-2.3623	-0.0011984	1.983	0.001006	-0.37931	-0.00019242	507.29150736276665	35.317	0.94425	32.607	32.306	33.251	-2.7097					37	18	3	0	0	0	0.53957	1	1429	1429		38.806	5.2906	1	73221	+		25997	24706	21251	21278	29162	29162					0.06076261191810772
KQTENDIKL	9	Unmodified	_KQTENDIKL_					0	0	0			REV__nc|ENSG00000140464|P29590-11|PML	REV__nc|ENSG00000140464|P29590-11|PML	MULTI-MSMS	OvCa99_classI_Rep5	1	544.8023681640625	2	544.800946	1087.58734	-0.59068	-0.00032181	1.186	0.00064616	0.59536	0.00032435	544.8007522381895	53.726	0.6574	53.726	53.432	54.089	0					45	15	3	0	0	0	0.10502	1	4270	4270		95.815	7.6382	1	12615000	+		25998	19677	21252	21279	29163	29163					0.04704806780796389
KQTGIKPF	8	Unmodified	_KQTGIKPF_					0	0	0			REV__ENST00000589245.5_1_19:37569451-37580012:+|nuORF	REV__ENST00000589245.5_1_19:37569451-37580012:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	459.25531005859375	2	459.774003	917.533452	-0.23245	-0.00010688	3.6038	0.0016569	3.3714	0.0015501	459.7753984704386	47.126	0.44535	44.416	44.142	44.588	-2.7097					12	8	2	0	0	0	0.028476	1	2868	2868		25.45	0	1	8116.6	+		25999	27906	21253	21280	29164	29164					0.07138679139745818
KQTHVKQAI	9	Unmodified	_KQTHVKQAI_					0	0	0		nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;SUPT5H|p.F340Rfs*39|1|0.15|ENSG00000196235|chr19:39466722-39466731|GCTGTTTGAT/-|frameshift_variant;SUPT5H|p.G241R|1|0.36|ENSG00000196235|chr19:39464894-39464894|G/A|missense_variant	nc|ENSG00000196235|O00267-2|SUPT5H	nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-MSMS	OvCa99_classI_Rep5	1	526.81396484375	2	526.81419	1051.61383	-1.1749	-0.00061897	0.55304	0.00029135	-0.62189	-0.00032762	526.8144970077967	27.366	1.1489	27.366	27.191	28.34	0					50	22	5	0	0	0	0.025955	1	796	796		139.97	54.611	1	2310700			26000	8581	21254	21281	29165	29165					0.09008540462787096
KQTKCIIAI	9	Unmodified	_KQTKCIIAI_					0	0	0			REV__tr|A0A553SN01|A0A553SN01_NIACIDNA3'-5'helicaseOS=NialliacirculansOX=1397GN=CEQ21_23525PE=4SV=1	REV__tr|A0A553SN01|A0A553SN01_NIACIDNA3'-5'helicaseOS=NialliacirculansOX=1397GN=CEQ21_23525PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	509.308349609375	2	509.309895	1016.60524	0.10074	5.1308E-05	-3.7855	-0.001928	-3.6848	-0.0018767	509.3078646236339	110.29	0.84051	109.14	108.87	109.71	-1.1444					41	15	3	0	0	0	0.42676	1	7976	7976		49.442	5.0644	1	152990	+		26001	30384	21255	21282	29166	29166					0.09759850501961864
KQTNLTKAQ	9	Unmodified	_KQTNLTKAQ_					0	0	0		ENSG00000080839|ENST00000373664|RBL1;nc|ENSG00000080839|P28749-2|RBL1	ENSG00000080839|ENST00000373664|RBL1	ENSG00000080839|ENST00000373664|RBL1	MULTI-MSMS	OvCa9_classI_Rep2	2	516.2959594726562	2	516.29583	1030.57711	0.9175	0.0004737	-1.1848	-0.0006117	-0.26729	-0.000138	516.295098499438	30.292	1.2323	27.582	27.36	28.592	-2.7097					62	24	4	0	0	0	0.44568	1	845	845		47.657	1.6851	1	509350			26002	1644	21256	21283	29167	29167					0.06304243846238933
KQTPKVLVV	9	Unmodified	_KQTPKVLVV_					0	0	0		ARID5B|p.M861Cfs*21|1|0.05|ENSG00000150347|chr10:62092044-62092044|A/-|frameshift_variant;ENSG00000150347|ENST00000279873|ARID5B;nc|ENSG00000150347|Q14865-2|ARID5B	ARID5B|p.M861Cfs*21|1|0.05|ENSG00000150347|chr10:62092044-62092044|A/-|frameshift_variant	ARID5B|p.M861Cfs*21|1|0.05|ENSG00000150347|chr10:62092044-62092044|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	506.33319091796875	2	506.331685	1010.64882	0.22174	0.00011228	-0.87801	-0.00044456	-0.65626	-0.00033229	506.3311496543887	57.754	1.0503	57.754	57.48	58.53	0					67	24	4	0	0	0	0.060996	2	4854	4854;4883		112.41	59.474	1	8866600			26003	116	21257	21284	29168;29169	29168					0.14391783270752967
KQTQKLLKV	9	Unmodified	_KQTQKLLKV_					0	0	0		ENST00000569891.5_1_16:50783609-50818363:+|nuORF;nc|ENSG00000083799|Q9NQC7-2|CYLD;ENSG00000083799|ENST00000427738|CYLD	ENST00000569891.5_1_16:50783609-50818363:+|nuORF	ENST00000569891.5_1_16:50783609-50818363:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	543.3565063476562	2	543.355691	1084.69683	-0.3493	-0.00018979	0.37867	0.00020575	0.029377	1.5962E-05	543.3557838172487	52.298	0.70326	52.298	52.038	52.741	0					40	15	4	0	0	0	0.19758	1	4098	4098		76.774	4.8967	1	1561100			26004	1699	21258	21285	29170	29170					0.1578685719080113
KQTRQLLLIDE	11	Unmodified	_KQTRQLLLIDE_					0	0	0			REV__ENSG00000172071|ENST00000303236|EIF2AK3	REV__ENSG00000172071|ENST00000303236|EIF2AK3	MULTI-MSMS	OvCa9_classI_Rep3	3	452.9330749511719	3	452.933031	1355.77726	1.2617	0.00057148	-0.39048	-0.00017686	0.87124	0.00039461	452.932778614781	65.409	1.321	62.463	62.198	63.519	-2.9459					63	25	4	0	0	0	0.71582	1	2607	2607		24.232	5.7008	1	128460	+		26005	21673	21259	21286	29171	29171					0.11360673723174841
KQTTLSYLLK	10	Unmodified	_KQTTLSYLLK_					0	0	0			REV__L1M2_dup9102|chr21:15781465-15783675:+|1.9878716944661228|0.1805436335784144|3.46|428.0|95|2|anti-sense	REV__L1M2_dup9102|chr21:15781465-15783675:+|1.9878716944661228|0.1805436335784144|3.46|428.0|95|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8567504882812	2	597.858264	1193.70197	-2.7036	-0.0016164	-0.53743	-0.00032131	-3.241	-0.0019377	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.74374	1	12605	12605		25.574	0	1	591030	+		26006	28359	21260	21287	29172	29172					0.11287116262747077
KQTVWLRL	8	Unmodified	_KQTVWLRL_					0	0	0		ENST00000230914.4_1_5:44817254-44817353:+|nuORF	ENST00000230914.4_1_5:44817254-44817353:+|nuORF	ENST00000230914.4_1_5:44817254-44817353:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.2955932617188	2	522.321651	1042.62875	-0.9844	-0.00051418	-1.0491	-0.00054799	-2.0336	-0.0010622	522.3210181321645	29.178	0.19978	29.178	29.037	29.237	0					6	3	2	0	0	0	0.028476	1	1012	1012		63.306	0	1	12862			26007	9721	21261	21288	29173	29173					0.10914032330788359
KQVEDETSY	9	Unmodified	_KQVEDETSY_					0	0	0			REV__tr|A0A553SLZ5|A0A553SLZ5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_21625PE=4SV=1	REV__tr|A0A553SLZ5|A0A553SLZ5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_21625PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.3215942382812	2	549.751118	1097.48768	-0.93509	-0.00051407	-4.3681	-0.0024014	-5.3032	-0.0029154	549.7482942918049	36.37	0.3215	36.37	36.211	36.532	0					13	6	3	0	0	0	0.027441	1	1922	1922		58.782	16.386	1	82699	+		26008	30281	21262	21289	29174	29174					-0.057160556237931814
KQVHPDTGI	9	Unmodified	_KQVHPDTGI_					0	0	0		ENSG00000276410|ENST00000615966|H2BC3;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000146047|ENST00000274764|H2BC1;ENSG00000196890|ENST00000693095|H2BC26;ENST00000436555.1_1_1:228651947-228652295:-|nuORF;HIST1H2BN|p.S57P|1|0.03|ENSG00000233822|chr6:27838830-27838830|T/C|missense_variant;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;nc|ENSG00000203814|Q5QNW6-2|H2BC18	ENSG00000276410|ENST00000615966|H2BC3;ENSG00000278588|ENST00000377733|H2BC10	ENSG00000278588|ENST00000377733|H2BC10	MULTI-MSMS	OvCa99_classI_Rep5	1	497.7688903808594	2	497.769448	993.524344	-0.88617	-0.00044111	0.042661	2.1235E-05	-0.84351	-0.00041987	497.76944795910276	36.373	1.9121	36.373	35.984	37.896	0					109	41	6	0	0	0	0.045281	2	1901	1901;1924		122.18	47.921	1	10562000			26009	3666;5948	21263	21290	29175;29176	29175					0.027322857834292336
KQVICLCKQSL	11	Unmodified	_KQVICLCKQSL_					0	0	0			REV__ENST00000572179.5_1_17:3617947-3618004:-|nuORF	REV__ENST00000572179.5_1_17:3617947-3618004:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	631.830810546875	2	631.851601	1261.68865	-0.40859	-0.00025817	-0.09831	-6.2117E-05	-0.5069	-0.00032029	631.8513970775734	96.686	0.46757	94.857	94.672	95.14	-1.8286					15	8	2	0	0	0	0.025265	1	6378	6378		42.864	21.179	1	32323	+		26010	27750	21264	21291	29177	29177					0.06827218887519848
KQVSDLISV	9	Unmodified	_KQVSDLISV_					0	0	0		DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	494.78900146484375	2	494.787307	987.560061	3.1734	0.0015701	-0.67102	-0.00033201	2.5023	0.0012381	494.78672078808637	88.095	0.7991	88.095	87.838	88.637	0					40	18	4	0	0	0	0.48047	1	9347	9347		44.377	0.26039	1	2964000			26011	721	21265	21292	29178	29178					0.06578323240432837
KQVSDLISV	9	Unmodified	_KQVSDLISV_					0	0	0		DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	494.787307	987.560061	-0.79399	-0.00039285	1.3932	0.00068936	0.59926	0.0002965	494.78756595725434	90.402	0.71783	88.321	88.004	88.722	-2.0805	0.069401	0.0016767	NaN	44.377	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190800			26012	721	21265	21292							0.06578323240432837
KQVSDLISV	9	Unmodified	_KQVSDLISV_					0	0	0		DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000581230.5_1_17:62496043-62497015:-|nuORF	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	494.787307	987.560061	-0.14005	-6.9297E-05	-1.3117	-0.00064901	-1.4518	-0.00071831	494.78711925960414	90.914	0.72018	88.339	88.007	88.727	-2.575	0.087172	-0.001	NaN	44.377	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169780			26013	721	21265	21292							0.06578323240432837
KQVSRMAYPE	10	Unmodified	_KQVSRMAYPE_					0	0	0			REV__tr|A0A553SI95|A0A553SI95_NIACIC5apeptidaseOS=NialliacirculansOX=1397GN=CEQ21_14480PE=3SV=1	REV__tr|A0A553SI95|A0A553SI95_NIACIC5apeptidaseOS=NialliacirculansOX=1397GN=CEQ21_14480PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	605.3373413085938	2	604.808248	1207.60194	1.3189	0.0007977	1.2439	0.00075229	2.5628	0.00155	604.8087968873099	155.3	1.6655	155.3	154.17	155.84	0					95	32	4	0	0	0	0.026891	1	18247	18247		24.519	11.707	1	1119600	+		26014	29873	21266	21293	29179	29179					0.006445556572998612
KQVTLERAR	9	Unmodified	_KQVTLERAR_					0	0	0			REV__ENSG00000146540|ENST00000397098|C7orf50	REV__ENSG00000146540|ENST00000397098|C7orf50	MULTI-MSMS	OvCa9_classI_Rep2	2	550.83251953125	2	550.830372	1099.64619	0.7561	0.00041648	2.8034	0.0015442	3.5595	0.0019607	550.831810295029	31.273	0.88647	28.563	28.347	29.233	-2.7097					37	17	3	0	0	0	0.3249	1	940	940		60.118	6.7668	1	181500	+		26015	20021	21267	21294	29180	29180					0.10035327865784893
KQYHRILKR	9	Unmodified	_KQYHRILKR_					0	0	0		nc|ENSG00000001167|P23511-2|NFYA;ENSG00000001167|ENST00000341376|NFYA	nc|ENSG00000001167|P23511-2|NFYA	nc|ENSG00000001167|P23511-2|NFYA	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.59130859375	3	414.591163	1240.75166	0.92323	0.00038276	-0.81974	-0.00033986	0.10349	4.2907E-05	414.5907458901833	32.76	2.0475	30.065	29.544	31.591	-2.6954					114	43	4	0	0	0	0.37135	2	805	805;829		54.776	5.2403	1	215500			26016	804	21268	21295	29181;29182	29181					0.14091288782060474
KQYLGVVTDNL	11	Unmodified	_KQYLGVVTDNL_					0	0	0			REV__ENSG00000133020|ENST00000403437|MYH8	REV__ENSG00000133020|ENST00000403437|MYH8	MULTI-SECPEP	OvCa9_classI_Rep2	2	416.2337951660156	3	417.231077	1248.6714	0.41823	0.0001745	4.4239	0.0018458	4.8421	0.0020203	417.56686362024	78.348	0.41079	76.609	76.301	76.712	-1.7398					13	7	3	0	0	0	0.025701	1	6522	6522		15.337	0	1	8726.4	+		26017	19118	21269	21296	29183	29183					0.05701337877735568
KQYREEPT	8	Unmodified	_KQYREEPT_					0	0	0			REV__ENST00000566021.1_1_16:14704654-14724033:-|nuORF	REV__ENST00000566021.1_1_16:14704654-14724033:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.3720092773438	2	525.764363	1049.51417	-0.18902	-9.9382E-05	1.1673	0.00061371	0.97824	0.00051432	525.7648034688214	57.198	0.34708	57.198	57.048	57.396	0					15	7	3	0	0	0	0.028476	1	4788	4788		42.396	3.59	1	698100	+		26018	19696	21270	21297	29184	29184					-0.008603219418091612
KQYRWFLFLLF	11	Unmodified	_KQYRWFLFLLF_					0	0	0			REV__tr|A0A553SIN4|A0A553SIN4_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_15220PE=4SV=1	REV__tr|A0A553SIN4|A0A553SIN4_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_15220PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.3112182617188	3	520.962374	1559.86529	-0.94713	-0.00049342	-3.4281	-0.0017859	-4.3752	-0.0022793	521.2940369335801	84.107	0.51015	81.846	81.7	82.21	-2.261					11	10	2	0	0	0	0.026497	1	4894	4894		6.001	0	1	28623	+		26019	29912	21271	21298	29185	29185					0.10775339104429804
KQYTGINAI	9	Unmodified	_KQYTGINAI_					0	0	0		ENSG00000115091|ENST00000263238|ACTR3;nc|ENSG00000133627|Q9P1U1-2|ACTR3B;nc|ENSG00000133627|Q9P1U1-3|ACTR3B;DPP6-ACTR3B|2|fusion;ENSG00000133627|ENST00000256001|ACTR3B;DPP6-ACTR3B|1|fusion;ENSG00000106526|ENST00000683684|ACTR3C	ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	MULTI-MSMS	OvCa99_classI_Rep5	1	504.2814025878906	2	504.279649	1006.54475	-0.12424	-6.2652E-05	0.27276	0.00013755	0.14852	7.4897E-05	504.2797417842987	68.729	0.86636	68.729	68.523	69.39	0					47	20	4	0	0	0	0.066102	1	6499	6499		109.48	29.766	1	2474700			26020	3061	21272	21299	29186	29186					0.04173456443231771
KQYVTSLLL	9	Unmodified	_KQYVTSLLL_					0	0	0		ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6;ENST00000555222.5_1_12:57492966-57496222:-|nuORF	ENSG00000166888|ENST00000300134|STAT6	ENSG00000166888|ENST00000300134|STAT6	MULTI-MSMS	OvCa99_classI_Rep5	1	532.8226318359375	2	532.82115	1063.62775	2.4623	0.001312	0.24624	0.0001312	2.7085	0.0014432	532.8211055758045	106.38	0.83376	106.38	106.1	106.93	0					48	18	4	0	0	0	0.21231	1	11994	11994		74.255	13.961	1	2348800			26021	6730	21273	21300	29187	29187					0.0984777317123644
KRAGTKKKPM	10	Unmodified	_KRAGTKKKPM_					0	0	0			REV__ENST00000514826.5_1_4:142143525-142143672:+|nuORF	REV__ENST00000514826.5_1_4:142143525-142143672:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	572.8526611328125	2	572.852793	1143.69103	-1.5514	-0.00088872	0.62004	0.00035519	-0.93134	-0.00053352	572.8528910049216	47.94	1.5397	45.23	44.44	45.979	-2.7097					71	30	3	0	0	0	0.73378	1	2958	2958		26.693	3.6504	1	96494	+		26022	17929	21274	21301	29188	29188					0.12493435407463949
KRAGTKKKPM	10	Unmodified	_KRAGTKKKPM_					0	0	0			REV__ENST00000514826.5_1_4:142143525-142143672:+|nuORF	REV__ENST00000514826.5_1_4:142143525-142143672:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	572.852793	1143.69103	-1.5514	-0.00088872	0.62004	0.00035519	-0.93134	-0.00053352	572.8528910049216	47.94	1.5397	45.23	44.44	45.979	-2.7097	0.010148	0.00034958	NaN	26.693	71	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96494	+		26023	17929	21274	21301							0.12493435407463949
KRAGTKKKPM	10	Unmodified	_KRAGTKKKPM_					0	0	0			REV__ENST00000514826.5_1_4:142143525-142143672:+|nuORF	REV__ENST00000514826.5_1_4:142143525-142143672:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	572.852793	1143.69103	-0.71111	-0.00040736	-0.57434	-0.00032901	-1.2854	-0.00073637	572.8522347866835	48.317	1.1858	45.21	44.838	46.024	-3.1077	-0.010148	-0.0010188	NaN	26.693	52	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195380	+		26024	17929	21274	21301							0.12493435407463949
KRALGRFK	8	Unmodified	_KRALGRFK_					0	0	0		ENSG00000175143|ENST00000642005|OR2T1;nc|ENSG00000175143|O43869|OR2T1	ENSG00000175143|ENST00000642005|OR2T1	ENSG00000175143|ENST00000642005|OR2T1	MSMS	OvCa9_classI_Rep4_	4	488.3150634765625	2	488.314161	974.613768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	31.588	1	29.057	28.557	29.557	-2.5308								0	0	0	0.30129	1	704	704		4.3163	0	1				26025	7519	21275	21302	29189	29189					0.12544585253453988
KRANKTPIR	9	Unmodified	_KRANKTPIR_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OvCa99_classI_Rep5	1	542.3400268554688	2	542.340907	1082.66726	-0.57582	-0.00031229	-0.012921	-7.0077E-06	-0.58874	-0.0003193	542.3407752047092	33.752	0.62583	33.752	33.583	34.209	0					30	12	4	0	0	0	0.34132	1	1576	1576		58.23	3.4536	1	759580			26026	5793;36288	21276	21303	29190	29190					0.12923337965298742
KRANKTPIR	9	Unmodified	_KRANKTPIR_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.340907	1082.66726	-3.2027	-0.001737	-7.4197	-0.004024	-10.622	-0.0057609	542.3367311152859	36.775	0.64095	34.066	33.844	34.485	-2.7097	0.15354	0.00016863	NaN	58.23	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52448			26027	5793;36288	21276	21303							0.12923337965298742
KRAQRDEHI	9	Unmodified	_KRAQRDEHI_					0	0	0		tr|A0A7D6VP34|A0A7D6VP34_9CLOTGTPdiphosphokinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15075PE=3SV=1	tr|A0A7D6VP34|A0A7D6VP34_9CLOTGTPdiphosphokinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15075PE=3SV=1	tr|A0A7D6VP34|A0A7D6VP34_9CLOTGTPdiphosphokinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15075PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	576.8163452148438	2	576.815253	1151.61595	2.8486	0.0016431	-2.9341	-0.0016924	-0.085567	-4.9356E-05	576.8135000601841	25.468	0.7966	22.758	22.579	23.376	-2.7097					36	18	3	0	0	0	0.61208	1	268	268		30.504	0	1	58707			26028	34746	21277	21304	29191	29191					0.04620969200618674
KRAVKERR	8	Unmodified	_KRAVKERR_					0	0	0			REV__chr19:16076697-16088027|114|11.31|0.3|5.22|+|0|TPM4,TPM4|1	REV__chr19:16076697-16088027|114|11.31|0.3|5.22|+|0|TPM4,TPM4|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.313720703125	2	521.833249	1041.65194	-0.80858	-0.00042194	3.1561	0.0016469	2.3475	0.001225	521.8347155714963	47.726	0.38954	47.726	47.508	47.897	0					13	8	2	0	0	0	0.028476	1	3454	3454		31.955	2.8053	1	126010	+		26029	15967	21278	21305	29192	29192					0.13278471168109718
KRCEKTLV	8	Carbamidomethyl (C)	_KRC(Carbamidomethyl (C))EKTLV_	KRC(1)EKTLV		KRC(61)EKTLV		0	1	0			REV__ENSG00000166289|ENST00000436066|PLEKHF1	REV__ENSG00000166289|ENST00000436066|PLEKHF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.2941284179688	2	517.294776	1032.575	-0.88153	-0.00045601	-2.9349	-0.0015182	-3.8165	-0.0019742	517.2931193992495	52.808	1.4627	49.6	49.196	50.659	-3.208					81	28	4	0	0	0	0.61436	1	3207	3207		60.972	11.53	1	977110	+		26030	21173	21279	21306	29193	29193	234				0.06001491836786954
KRCLSIRIQ	9	Unmodified	_KRCLSIRIQ_					0	0	0			REV__ENST00000448115.1_1_1:220490746-220490923:-|nuORF	REV__ENST00000448115.1_1_1:220490746-220490923:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	558.8404541015625	2	558.837143	1115.65973	1.1066	0.00061842	4.4686	0.0024972	5.5752	0.0031156	558.8394771772328	30.588	0.88633	27.878	27.706	28.592	-2.7097					39	17	3	0	0	0	0.14998	1	846	846		84.916	22.808	1	114560	+		26031	25929	21280	21307	29194	29194					0.1065286237339933
KRDCGAIL	8	Unmodified	_KRDCGAIL_					0	0	0		ENSG00000157796|ENST00000399820|WDR19;ENST00000512095.5_1_4:39217537-39276579:+|nuORF	ENSG00000157796|ENST00000399820|WDR19	ENSG00000157796|ENST00000399820|WDR19	MULTI-MSMS	OvCa99_classI_Rep5	1	438.24176025390625	2	438.242012	874.469472	1.1069	0.00048507	1.9636	0.00086055	3.0705	0.0013456	438.242648290707	114.47	0.54451	114.47	114.2	114.74	0					19	11	2	0	0	0	0.73626	1	13074	13074		33.516	0	1	110590			26032	5911	21281	21308	29195	29195					0.027215757111662242
KRDEMGEIL	9	Oxidation (M)	_KRDEM(Oxidation (M))GEIL_		KRDEM(1)GEIL		KRDEM(110)GEIL	0	0	1			REV__nc|ENSG00000039319|Q7Z3T8-3|ZFYVE16	REV__nc|ENSG00000039319|Q7Z3T8-3|ZFYVE16	MULTI-MSMS	OvCa99_classI_Rep5	1	553.7770385742188	2	553.779156	1105.54376	1.1687	0.0006472	-4.1276	-0.0022858	-2.9589	-0.0016386	553.7768587031202	109.61	0.80582	109.61	109.33	110.13	0					37	17	3	0	0	0	0.059253	1	12432	12432		113.41	10.638	1	1968300	+		26033	16621	21282	21309	29196	29196		394			-0.004791259879766585
KRDFRKVVF	9	Unmodified	_KRDFRKVVF_					0	0	0		ENSG00000168259|ENST00000457167|DNAJC7;nc|ENSG00000168259|Q99615-2|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	ENSG00000168259|ENST00000457167|DNAJC7	MULTI-MSMS	OvCa9_classI_Rep2	2	597.856201171875	2	597.858932	1193.70331	-3.1766	-0.0018991	-1.0809	-0.0006462	-4.2574	-0.0025453	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.6653	1	14816	14816		24.203	3.2558	1	436470			26034	6883	21283	21310	29197	29197					0.11420795142180395
KRDKNLNLRTI	11	Unmodified	_KRDKNLNLRTI_					0	0	0			REV__ENST00000415623.1_1_10:70184604-70184751:+|nuORF	REV__ENST00000415623.1_1_10:70184604-70184751:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	457.6085205078125	3	457.612404	1369.81538	-6.2055	-0.0028397	-3.1156	-0.0014257	-9.3211	-0.0042654	457.6108688134911	157.03	3.4081	155.86	154.91	158.32	-1.1707					147	80	2	0	0	0	0.72483	1	13488	13488		17.833	3.1395	1	68588	+		26035	25533	21284	21311	29198	29198					0.145266044284881
KREKIFLDGS	10	Unmodified	_KREKIFLDGS_					0	0	0			REV__tr|A0A553SGW3|A0A553SGW3_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11645PE=4SV=1	REV__tr|A0A553SGW3|A0A553SGW3_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11645PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	596.838134765625	2	596.837862	1191.66117	1.9846	0.0011845	-2.1538	-0.0012854	-0.16912	-0.00010094	596.836527250184	27.345	0.47887	24.635	24.472	24.951	-2.7097					14	10	2	0	0	0	0.81208	1	460	460		17.468	2.6031	1	29991	+		26036	29744	21285	21312	29199	29199					0.073007749431099
KRELHTIS	8	Unmodified	_KRELHTIS_					0	0	0		nc|ENSG00000167130|Q86YN1-2|DOLPP1;ENSG00000167130|ENST00000372546|DOLPP1	nc|ENSG00000167130|Q86YN1-2|DOLPP1	nc|ENSG00000167130|Q86YN1-2|DOLPP1	MULTI-MSMS	OvCa9_classI_Rep3	3	492.284423828125	2	492.285266	982.555979	-4.5363	-0.0022332	4.3023	0.002118	-0.23399	-0.00011519	492.28737227483106	149.34	1.4054	148.39	148.05	149.46	-0.95119					58	27	4	0	0	0	0.73938	1	12655	12655		31.955	7.7521	1	182000			26037	6761	21286	21313	29200	29200					0.06400278537375925
KREPLITQ	8	Unmodified	_KREPLITQ_					0	0	0		tr|A0A7D6ZZA7|A0A7D6ZZA7_9CLOTAmidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05555PE=4SV=1	tr|A0A7D6ZZA7|A0A7D6ZZA7_9CLOTAmidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05555PE=4SV=1	tr|A0A7D6ZZA7|A0A7D6ZZA7_9CLOTAmidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05555PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.3244934082031	2	492.795466	983.57638	-0.15767	-7.7701E-05	0.11558	5.6958E-05	-0.042094	-2.0744E-05	492.7952280816611	79.591	0.61841	76.839	76.61	77.228	-2.7514					18	12	2	0	0	0	0.028476	1	6445	6445		52.937	8.5595	1	120140			26038	35952	21287	21314	29201	29201					0.08393449197183145
KREPPKRN	8	Unmodified	_KREPPKRN_					0	0	0			REV__ENSG00000269437|ENST00000602195|NXF2B	REV__ENSG00000269437|ENST00000602195|NXF2B	MULTI-MSMS	OvCa9_classI_Rep3	3	512.8036499023438	2	512.804157	1023.59376	0.48569	0.00024906	2.1223	0.0010883	2.608	0.0013374	512.8051194113467	130.74	1.1749	129.61	129.32	130.49	-1.1249					50	23	3	0	0	0	0.74229	1	10430	10430		30.504	3.7075	1	153750	+		26039	23601	21288	21315	29202	29202					0.08290789522845898
KRFDHSPCD	9	Unmodified	_KRFDHSPCD_					0	0	0		ENST00000444273.6_1_6:56954967-57015704:+|nuORF;nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451	ENST00000444273.6_1_6:56954967-57015704:+|nuORF	ENST00000444273.6_1_6:56954967-57015704:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.7481689453125	2	552.74819	1103.48183	-0.90023	-0.0004976	1.1582	0.00064022	0.25802	0.00014262	552.7488642845091	41.86	1.3929	38.88	38.645	40.037	-2.9804					41	26	3	0	0	0	0.38529	1	1907	1907		53.351	0	1	234990			26040	2885	21289	21316	29203	29203					-0.06577432616450096
KRFEHSAKL	9	Unmodified	_KRFEHSAKL_					0	0	0		nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22;ENST00000478443.1_1_17:20910195-20914666:-|nuORF	nc|ENSG00000124422|Q9UPT9-2|USP22	nc|ENSG00000124422|Q9UPT9-2|USP22	MULTI-MSMS	OvCa99_classI_Rep5	1	558.318115234375	2	558.31964	1114.62473	0.29299	0.00016358	-0.70213	-0.00039201	-0.40914	-0.00022843	558.3192260308019	30.552	0.74252	30.552	30.285	31.027	0					24	14	2	0	0	0	0.13504	1	1177	1177		87.696	18.91	1	1045700			26041	3649	21290	21317	29204	29204					0.07199942837087292
KRFEQQQKL	9	Unmodified	_KRFEQQQKL_					0	0	0		nc|ENSG00000275066|Q9UMZ2-6|SYNRG;nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG;SYNRG|p.Q605Ifs*5|1|0.09|ENSG00000275066|chr17:37553910-37553911|-/AT|frameshift_variant	nc|ENSG00000275066|Q9UMZ2-6|SYNRG	nc|ENSG00000275066|Q9UMZ2-6|SYNRG	MULTI-MSMS	OvCa99_classI_Rep5	1	602.843505859375	2	602.843479	1203.67241	0.26914	0.00016225	-0.93998	-0.00056666	-0.67085	-0.00040442	602.8429266469971	32.868	1.0296	32.868	32.651	33.681	0					51	20	5	0	0	0	0.023079	1	1462	1462		127.46	34.266	1	2612000			26042	9567	21291	21318	29205	29205					0.07871597037296851
KRFEQQQKL	9	Unmodified	_KRFEQQQKL_					0	0	0		nc|ENSG00000275066|Q9UMZ2-6|SYNRG;nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG;SYNRG|p.Q605Ifs*5|1|0.09|ENSG00000275066|chr17:37553910-37553911|-/AT|frameshift_variant	nc|ENSG00000275066|Q9UMZ2-6|SYNRG	nc|ENSG00000275066|Q9UMZ2-6|SYNRG	MULTI-MATCH	OvCa9_classI_Rep2	2		2	602.843479	1203.67241	-2.526	-0.0015228	1.11	0.00066917	-1.4159	-0.00085359	602.8440319470237	35.377	0.29597	32.667	32.454	32.75	-2.7097	-0.10077	0.0021854	NaN	127.46	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10065			26043	9567	21291	21318							0.07871597037296851
KRFFVLRAAS	10	Unmodified	_KRFFVLRAAS_					0	0	0		IRS1|p.M733Ifs*27|1|0.06|ENSG00000169047|chr2:226796540-226796541|-/AAAGAAAAAAAGGATA|frameshift_variant;IRS1|p.S794Afs*149|1|0.14|ENSG00000169047|chr2:226796360-226796360|A/-|frameshift_variant;ENSG00000169047|ENST00000305123|IRS1	IRS1|p.M733Ifs*27|1|0.06|ENSG00000169047|chr2:226796540-226796541|-/AAAGAAAAAAAGGATA|frameshift_variant	IRS1|p.M733Ifs*27|1|0.06|ENSG00000169047|chr2:226796540-226796541|-/AAAGAAAAAAAGGATA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8565673828125	2	597.858932	1193.70331	-2.4902	-0.0014888	-1.9599	-0.0011718	-4.4501	-0.0026606	597.8575960796461	144.35	4.0594	144.12	142.06	146.12	-0.22696					210	81	4	0	0	0	0.74374	1	14549	14549		25.574	1.0549	1	136500			26044	6971	21292	21319	29206	29206					0.11420795142203133
KRFFVLRAAS	10	Unmodified	_KRFFVLRAAS_					0	0	0		IRS1|p.M733Ifs*27|1|0.06|ENSG00000169047|chr2:226796540-226796541|-/AAAGAAAAAAAGGATA|frameshift_variant;IRS1|p.S794Afs*149|1|0.14|ENSG00000169047|chr2:226796360-226796360|A/-|frameshift_variant;ENSG00000169047|ENST00000305123|IRS1	IRS1|p.M733Ifs*27|1|0.06|ENSG00000169047|chr2:226796540-226796541|-/AAAGAAAAAAAGGATA|frameshift_variant	IRS1|p.M733Ifs*27|1|0.06|ENSG00000169047|chr2:226796540-226796541|-/AAAGAAAAAAAGGATA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8567504882812	2	597.858932	1193.70331	-2.7036	-0.0016164	-1.6559	-0.00099001	-4.3595	-0.0026064	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.73378	1	12384	12384		26.693	5.746	1	591030			26045	6971	21292	21319	29207	29207					0.11420795142203133
KRFLALFY	8	Unmodified	_KRFLALFY_					0	0	0		tr|A0A553SGE1|A0A553SGE1_NIACIDNAtopoisomeraseOS=NialliacirculansOX=1397GN=CEQ21_10660PE=3SV=1	tr|A0A553SGE1|A0A553SGE1_NIACIDNAtopoisomeraseOS=NialliacirculansOX=1397GN=CEQ21_10660PE=3SV=1	tr|A0A553SGE1|A0A553SGE1_NIACIDNAtopoisomeraseOS=NialliacirculansOX=1397GN=CEQ21_10660PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	530.2987060546875	2	529.313295	1056.61204	-1.3627	-0.00072128	-3.9235	-0.0020768	-5.2862	-0.002798	529.3108675958258	99.645	1.439	98.814	98.169	99.608	-0.83052					56	28	4	0	0	0	0.028476	1	9131	9131		46.766	18.884	1	162630			26046	33148	21293	21320	29208	29208					0.08599531444838249
KRFLAMKSIT	10	Unmodified	_KRFLAMKSIT_					0	0	0		STPG2|p.P208A|1|0.08|ENSG00000163116|chr4:97981309-97981309|G/C|missense_variant	STPG2|p.P208A|1|0.08|ENSG00000163116|chr4:97981309-97981309|G/C|missense_variant	STPG2|p.P208A|1|0.08|ENSG00000163116|chr4:97981309-97981309|G/C|missense_variant	MSMS	OvCa9_classI_Rep4_	4	597.8563232421875	2	597.855001	1193.69545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	150.7	1	149.27	148.77	149.77	-1.4344								0	0	0	0.1467	1	14892	14892		37.812	4.2959	1				26047	32926	21294	21321	29209	29209					0.10634899830392897
KRFQAPPL	8	Unmodified	_KRFQAPPL_					0	0	0			REV__nc|ENSG00000134884|Q9NWB6-2|ARGLU1	REV__nc|ENSG00000134884|Q9NWB6-2|ARGLU1	MULTI-MSMS	OvCa9_classI_Rep3	3	478.78485107421875	2	478.787444	955.560336	-3.0173	-0.0014446	-1.2965	-0.00062077	-4.3138	-0.0020654	478.78669233564773	146.16	1.5937	145.21	144.8	146.39	-0.95947					82	31	4	0	0	0	0.75661	1	12275	12275		19.36	0	1	384210	+		26048	28865	21295	21322	29210	29210					0.0807778775093766
KRFRKSIE	8	Unmodified	_KRFRKSIE_					0	0	0			REV__ENSG00000159399|ENST00000290573|HK2	REV__ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	OvCa99_classI_Rep5	1	532.3220825195312	2	532.322183	1062.62981	-0.27651	-0.00014719	-0.51225	-0.00027268	-0.78876	-0.00041987	532.3219154166727	44.728	1.585	44.728	44.484	46.069	0					88	35	5	0	0	0	0.6962	1	3052	3052		44.117	3.3386	1	12016000	+		26049	20613	21296	21323	29211	29211					0.10100246699721538
KRFRSLAVSN	10	Unmodified	_KRFRSLAVSN_					0	0	0		HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|105|2|anti-sense	HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|105|2|anti-sense	HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|105|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3428344726562	2	589.343646	1176.67274	-3.0463	-0.0017953	1.897	0.001118	-1.1493	-0.00067734	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.762	1	15028	15028		23.523	2.5758	1	272220			26050	14410	21297	21324	29212	29212					0.09147016757151505
KRFTFSLFG	9	Unmodified	_KRFTFSLFG_					0	0	0		ENST00000370982.3_1_1:68171034-68171088:-|nuORF	ENST00000370982.3_1_1:68171034-68171088:-|nuORF	ENST00000370982.3_1_1:68171034-68171088:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.7858276367188	2	551.805834	1101.59712	1.7913	0.00098845	-2.2345	-0.001233	-0.44324	-0.00024458	551.8042640651473	29.669	0.57858	26.959	26.781	27.36	-2.7097					15	11	2	0	0	0	0.027462	1	773	773		26.796	3.7536	1	15209			26051	10944	21298	21325	29213	29213					0.05038039576834308
KRFVIRKRLNY	11	Unmodified	_KRFVIRKRLNY_					0	0	0			REV__nc|ENSG00000143473|O95259-2|KCNH1	REV__nc|ENSG00000143473|O95259-2|KCNH1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3097839355469	3	498.312288	1491.91504	-6.6762	-0.0033268	2.0273	0.0010102	-4.6489	-0.0023166	498.3133001501435	161.41	1.8887	159.79	158.52	160.4	-1.6239					107	42	4	0	0	0	0.72582	1	15949	15949		3.4087	0.19739	1	100850	+		26052	19843	21299	21326	29214	29214					0.18875466833128485
KRFVKEVMP	9	Unmodified	_KRFVKEVMP_					0	0	0			REV__ENSG00000197557|ENST00000355689|TTC30A	REV__ENSG00000197557|ENST00000355689|TTC30A	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3295288085938	2	567.328619	1132.64269	-2.3399	-0.0013275	4.3821	0.0024861	2.0422	0.0011586	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.65476	1	14637	14637		25.45	0.93098	1	241060	+		26053	22934	21300	21327	29215	29215					0.08166941767581193
KRFVLKATT	9	Unmodified	_KRFVLKATT_					0	0	0		EFCAB6|p.G346V|1|0.32|ENSG00000186976|chr22:43687576-43687576|C/A|missense_variant	EFCAB6|p.G346V|1|0.32|ENSG00000186976|chr22:43687576-43687576|C/A|missense_variant	EFCAB6|p.G346V|1|0.32|ENSG00000186976|chr22:43687576-43687576|C/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.3353881835938	2	532.334759	1062.65496	-2.0584	-0.0010958	1.3756	0.00073226	-0.68287	-0.00036352	532.3354292636116	44.676	1.2856	41.638	41.362	42.647	-3.0385					66	24	4	0	0	0	0.53483	1	2230	2230		39.253	2.8061	1	354190			26054	780	21301	21328	29216	29216					0.1261430150225351
KRFVLKATT	9	Unmodified	_KRFVLKATT_					0	0	0		EFCAB6|p.G346V|1|0.32|ENSG00000186976|chr22:43687576-43687576|C/A|missense_variant	EFCAB6|p.G346V|1|0.32|ENSG00000186976|chr22:43687576-43687576|C/A|missense_variant	EFCAB6|p.G346V|1|0.32|ENSG00000186976|chr22:43687576-43687576|C/A|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	532.334759	1062.65496	-0.78635	-0.0004186	0.18442	9.8175E-05	-0.60193	-0.00032043	532.3347722507184	44.475	1.2941	41.765	41.402	42.697	-2.7097	0.063582	-0.00053503	NaN	39.253	49	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113310			26055	780	21301	21328							0.1261430150225351
KRGDVIYIL	9	Unmodified	_KRGDVIYIL_					0	0	0		ENSG00000005020|ENST00000345317|SKAP2;CHN2-SKAP2|1|fusion	ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	MULTI-MSMS	OvCa9_classI_Rep3	3	538.826904296875	2	538.826766	1075.63898	-0.48403	-0.00026081	-0.63187	-0.00034047	-1.1159	-0.00060128	538.8264089521746	92.869	3.0409	90.907	90.606	93.647	-1.9617					158	60	5	0	0	0	0.2422	3	5920	5920;5932;5938		69.628	9.224	1	3810900			26056	235	21302	21329	29217;29218;29219	29217					0.1041859526535518
KRGDVIYIL	9	Unmodified	_KRGDVIYIL_					0	0	0		ENSG00000005020|ENST00000345317|SKAP2;CHN2-SKAP2|1|fusion	ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.8276977539062	2	538.826766	1075.63898	-1.3695	-0.0007379	0.5105	0.00027507	-0.85896	-0.00046283	538.8270006767474	93.446	2.9138	90.938	90.614	93.527	-2.5072					151	59	5	0	0	0	0.1804	3	8166	8142;8154;8166		79.713	10.926	1	3549600			26057	235	21302	21329	29220;29221;29222	29222					0.1041859526535518
KRGDVIYIL	9	Unmodified	_KRGDVIYIL_					0	0	0		ENSG00000005020|ENST00000345317|SKAP2;CHN2-SKAP2|1|fusion	ENSG00000005020|ENST00000345317|SKAP2	ENSG00000005020|ENST00000345317|SKAP2	MULTI-MATCH	OvCa99_classI_Rep5	1		2	538.826766	1075.63898	0.95228	0.00051312	-5.4464	-0.0029346	-4.4941	-0.0024215	538.8238990645456	90.906	0.12136	90.906	90.816	90.938	0	0.064258	-0.0040709	NaN	79.713	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193040			26058	235	21302	21329							0.1041859526535518
KRGGVKSH	8	Unmodified	_KRGGVKSH_					0	0	0			REV__ENST00000473478.5_1_2:148779198-148811970:+|nuORF	REV__ENST00000473478.5_1_2:148779198-148811970:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	434.7591247558594	2	434.759218	867.503883	-1.3377	-0.00058158	1.4594	0.00063449	0.12169	5.2907E-05	434.7597358333452	139.11	1.8707	138.05	137.63	139.51	-1.0595					91	37	4	0	0	0	0.75241	1	11467	11467		25.45	2.4135	1	610970	+		26059	26330	21303	21330	29223	29223					0.06483159914284897
KRGQLLATSE	10	Unmodified	_KRGQLLATSE_					0	0	0			REV__nc|ENSG00000145241|Q03188-2|CENPC	REV__nc|ENSG00000145241|Q03188-2|CENPC	MSMS	OvCa99_classI_Rep5	1	551.8140869140625	2	551.814387	1101.61422	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.817	1	41.817	41.317	42.317	0								0	0	0	0.13503	1	2641	2641		54.776	10.399	1		+		26060	19956	21304	21331	29224	29224					0.06747915391997594
KRGQLLQAS	9	Unmodified	_KRGQLLQAS_					0	0	0			REV__ENSG00000144445|ENST00000281772|KANSL1L	REV__ENSG00000144445|ENST00000281772|KANSL1L	MULTI-MSMS	OvCa9_classI_Rep2	2	500.79754638671875	2	500.79854	999.582528	-3.3891	-0.0016973	3.13	0.0015675	-0.25912	-0.00012977	500.79997207948645	149.12	1.1552	148.89	148.52	149.67	-0.22696					61	22	4	0	0	0	0.67509	1	15092	15092		23.042	1.0826	1	177980	+		26061	19911	21305	21332	29225	29225					0.08271967428697735
KRGTKLTAI	9	Unmodified	_KRGTKLTAI_					0	0	0			REV__CON__P02777	REV__CON__P02777	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.7757873535156	2	494.319109	986.623664	1.8153	0.00089736	4.3177	0.0021343	6.1331	0.0030317	494.3209602907567	77.517	0.84103	77.517	77.293	78.134	0					27	19	3	0	0	0	0.027462	1	7842	7842		52.937	15.908	1	533590	+	+	26062	16186	21306	21333	29226	29226					0.12981728468162146
KRHLKHKFRWH	11	Unmodified	_KRHLKHKFRWH_					0	0	0			REV__ENST00000333003.9_1_12:95434350-95442961:-|nuORF	REV__ENST00000333003.9_1_12:95434350-95442961:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2865600585938	3	524.976011	1571.9062	-0.53952	-0.00028324	-0.9972	-0.0005235	-1.5367	-0.00080674	525.3092544740955	69.474	0.20404	69.474	69.347	69.552	0					6	4	2	0	0	0	0.026534	1	6595	6595		6.001	4.6791	1	110220	+		26063	24553	21307	21334	29227	29227					0.14312537987279939
KRHLVPTF	8	Unmodified	_KRHLVPTF_					0	0	0			REV__tr|A0A553SF24|A0A553SF24_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_08085PE=4SV=1	REV__tr|A0A553SF24|A0A553SF24_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_08085PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.27252197265625	2	499.300719	996.586885	0.35786	0.00017868	3.4738	0.0017345	3.8316	0.0019131	499.80242103797207	89.611	0.94759	87.036	86.752	87.7	-2.575					41	18	3	0	0	0	0.028476	1	7710	7710		60.294	42.032	1	53136	+		26064	29529	21308	21335	29228	29228					0.08845476642272843
KRHNYVRKV	9	Unmodified	_KRHNYVRKV_					0	0	0		ENST00000503183.1_1_5:137848440-137853282:-|nuORF;ENST00000506345.5_1_5:137847134-137853282:-|nuORF;nc|ENSG00000120705|P62495-2|ETF1;ENSG00000120705|ENST00000360541|ETF1	ENST00000503183.1_1_5:137848440-137853282:-|nuORF	ENST00000503183.1_1_5:137848440-137853282:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	600.3629760742188	2	600.359631	1198.70471	-0.52139	-0.00031302	0.16368	9.8267E-05	-0.35771	-0.00021475	600.359782671401	25.919	0.79875	25.919	25.693	26.492	0					27	15	2	0	0	0	0.2784	2	617	617;641		58.782	29.445	1	1341200			26065	3446	21309	21336	29229;29230	29229					0.1133042923092944
KRHPSIKVTAE	11	Unmodified	_KRHPSIKVTAE_					0	0	0		ZNF462|p.Q1930Rfs*3|1|0.04|ENSG00000148143|chr9:106929701-106929701|A/-|frameshift_variant;ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;nc|ENSG00000148143|Q96JM2-2|ZNF462	ZNF462|p.Q1930Rfs*3|1|0.04|ENSG00000148143|chr9:106929701-106929701|A/-|frameshift_variant	ZNF462|p.Q1930Rfs*3|1|0.04|ENSG00000148143|chr9:106929701-106929701|A/-|frameshift_variant	MSMS	OvCa9_classI_Rep4_	4	633.3695678710938	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	154.18	1	152.72	152.22	153.22	-1.4516								0	0	0	0.19458	1	15261	15261		30.318	3.6248	1				26066	5386	21310	21337	29231	29231					0.10339555100085818
KRHVFGHTQ	9	Unmodified	_KRHVFGHTQ_					0	0	0			REV__ENSG00000164237|ENST00000296658|CMBL	REV__ENSG00000164237|ENST00000296658|CMBL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.3654174804688	2	555.301781	1108.58901	0.76689	0.00042586	3.6272	0.0020142	4.3941	0.00244	555.3040946469887	38.393	0.59365	35.467	35.206	35.799	-2.9264					26	11	3	0	0	0	0.027462	1	1511	1511		34.173	5.023	1	19665	+		26067	20962	21311	21338	29232	29232					0.0390590538008837
KRHVSVGRGK	10	Unmodified	_KRHVSVGRGK_					0	0	0			REV__tr|A0A7D6VP34|A0A7D6VP34_9CLOTGTPdiphosphokinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15075PE=3SV=1	REV__tr|A0A7D6VP34|A0A7D6VP34_9CLOTGTPdiphosphokinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15075PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	562.3422241210938	2	562.343981	1122.67341	-2.9015	-0.0016316	1.6805	0.00094503	-1.221	-0.00068662	562.3448419475409	142.33	4.504	141.32	140	144.5	-1.0106					205	90	3	0	0	0	0.81289	1	11829	11829		17.365	0	1	106680	+		26068	31225	21312	21339	29233	29233					0.11697856196838075
KRIDIIHNL	9	Unmodified	_KRIDIIHNL_					0	0	0		ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	MULTI-MSMS	OvCa99_classI_Rep5	1	561.3450317382812	2	561.343115	1120.67168	0.97365	0.00054655	-1.5421	-0.00086562	-0.5684	-0.00031907	561.3421224939409	66.797	0.68381	66.797	66.412	67.096	0					46	16	4	0	0	0	0.2077	2	6221	6204;6221		75.043	2.1641	1	2460400			26069	6369	21313	21340	29234;29235	29235					0.11616802388221004
KRIHLAREQ	9	Unmodified	_KRIHLAREQ_					0	0	0			REV__SRGAP2|p.D724Vfs*88|1|0.04|ENSG00000266028|chr1:206450460-206450460|A/-|frameshift_variant	REV__SRGAP2|p.D724Vfs*88|1|0.04|ENSG00000266028|chr1:206450460-206450460|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8432006835938	2	575.843813	1149.67307	-4.018	-0.0023138	2.8816	0.0016594	-1.1364	-0.0006544	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.62352	1	12245	12245		29.15	1.2673	1	445630	+		26070	23584	21314	21341	29236	29236					0.10422436476960684
KRIIEGLNEVL	11	Unmodified	_KRIIEGLNEVL_					0	0	0		tr|A0A553SKM8|A0A553SKM8_NIACIProbableendonuclease4OS=NialliacirculansOX=1397GN=nfoPE=3SV=1	tr|A0A553SKM8|A0A553SKM8_NIACIProbableendonuclease4OS=NialliacirculansOX=1397GN=nfoPE=3SV=1	tr|A0A553SKM8|A0A553SKM8_NIACIProbableendonuclease4OS=NialliacirculansOX=1397GN=nfoPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	641.8426513671875	2	642.387719	1282.76089	1.0878	0.00069877	1.449	0.00093082	2.5368	0.0016296	642.3847382331263	158.21	1.992	158.21	157	158.99	0					85	40	4	0	0	0	0.025814	1	18633	18633		33.922	3.6039	1	59174			26071	33635	21315	21342	29237	29237					0.13081592557091426
KRIIGKILN	9	Unmodified	_KRIIGKILN_					0	0	0			REV__tr|A0A7D7A128|A0A7D7A128_9CLOTDUF2238domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13675PE=4SV=1	REV__tr|A0A7D7A128|A0A7D7A128_9CLOTDUF2238domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13675PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	527.86181640625	2	527.858401	1053.70225	-0.81487	-0.00043014	0.68105	0.0003595	-0.13382	-7.0639E-05	527.8585964680295	59.245	0.90625	59.245	58.973	59.879	0					58	23	3	0	0	0	0.29717	1	5102	5102		63.306	15.649	1	1771100	+		26072	32467	21316	21343	29238	29238					0.17754580773294037
KRIPEPMAP	9	Unmodified	_KRIPEPMAP_					0	0	0			REV__ENST00000477508.1_1_17:18183848-18186112:-|nuORF	REV__ENST00000477508.1_1_17:18183848-18186112:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.8115234375	2	519.791869	1037.56919	-0.0010663	-5.5424E-07	-2.1429	-0.0011139	-2.144	-0.0011144	520.2924668691395	98.724	0.6235	97.039	96.646	97.27	-1.685					29	11	3	0	0	0	0.027462	1	6565	6565		29.15	0	1	114360	+		26073	21996	21317	21344	29239	29239					0.0519039332509692
KRIPEPMAP	9	Unmodified	_KRIPEPMAP_					0	0	0			REV__ENST00000477508.1_1_17:18183848-18186112:-|nuORF	REV__ENST00000477508.1_1_17:18183848-18186112:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	519.791869	1037.56919	1.8171	0.0009445	-1.7617	-0.0009157	0.055414	2.8804E-05	519.7905490511721	96.589	0.50517	96.589	96.418	96.923	0	-0.29238	0.00049368	NaN	29.15	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	596440	+		26074	21996	21317	21344							0.0519039332509692
KRIPEPMAP	9	Unmodified	_KRIPEPMAP_					0	0	0			REV__ENST00000477508.1_1_17:18183848-18186112:-|nuORF	REV__ENST00000477508.1_1_17:18183848-18186112:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	519.791869	1037.56919	0.11659	6.0601E-05	-2.5962	-0.0013495	-2.4796	-0.0012889	520.2921009891337	97.845	0.63577	96.886	96.612	97.247	-0.95856	0.0045377	-0.00037386	NaN	29.15	34	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102980	+		26075	21996	21317	21344							0.0519039332509692
KRKAEAAVV	9	Unmodified	_KRKAEAAVV_					0	0	0		ENSG00000211450|ENST00000534355|SELENOH	ENSG00000211450|ENST00000534355|SELENOH	ENSG00000211450|ENST00000534355|SELENOH	MULTI-MSMS	OvCa99_classI_Rep5	1	486.3033752441406	2	486.303458	970.592364	-0.9016	-0.00043845	0.34714	0.00016881	-0.55446	-0.00026964	486.30348082925934	28.253	0.64723	28.253	27.941	28.588	0					28	12	4	0	0	0	0.5811	1	904	904		34.173	3.6689	1	329890			26076	9105	21318	21345	29240	29240					0.10589155434081476
KRKAEMELKM	10	Unmodified	_KRKAEMELKM_					0	0	0			REV__nc|ENSG00000196586|Q9UM54-5|MYO6	REV__nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-MSMS	OvCa9_classI_Rep4_	4	632.3519287109375	2	632.349225	1262.6839	-0.81799	-0.00051726	3.414	0.0021588	2.596	0.0016416	632.3512790362679	100.73	0.69672	98.465	98.187	98.883	-2.2665					42	13	5	0	0	0	0.67931	1	9042	9042		32.812	0.061884	1	547900	+		26077	22846	21319	21346	29241	29241					0.06306334744726882
KRKALDILP	9	Unmodified	_KRKALDILP_					0	0	0		tr|A0A553SFM1|A0A553SFM1_NIACICarbamoylphosphatesynthaselargechainOS=NialliacirculansOX=1397GN=carBPE=3SV=1	tr|A0A553SFM1|A0A553SFM1_NIACICarbamoylphosphatesynthaselargechainOS=NialliacirculansOX=1397GN=carBPE=3SV=1	tr|A0A553SFM1|A0A553SFM1_NIACICarbamoylphosphatesynthaselargechainOS=NialliacirculansOX=1397GN=carBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	527.3408813476562	2	527.342584	1052.67061	2.2817	0.0012032	-2.4212	-0.0012768	-0.13953	-7.3579E-05	527.3412130770646	27.081	0.8382	24.371	24.073	24.911	-2.7097					49	23	3	0	0	0	0.67509	1	440	440		23.042	1.0826	1	32709			26078	33050	21320	21347	29242	29242					0.1463858801932929
KRKERVEKWR	10	Unmodified	_KRKERVEKWR_					0	0	0		nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46	nc|ENSG00000145833|Q7L014|DDX46	nc|ENSG00000145833|Q7L014|DDX46	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.2832946777344	3	472.28451	1413.8317	-5.3969	-0.0025489	4.0171	0.0018972	-1.3798	-0.00065166	472.28668669654706	159.46	3.529	157.88	156.69	160.22	-1.5858					186	88	4	0	0	0	0.8236	1	15788	15788		16.007	3.0493	1	120390			26079	5247	21321	21348	29243	29243					0.14133730385242416
KRKGCSKQI	9	Unmodified	_KRKGCSKQI_					0	0	0			REV__tr|A0A7D6ZFU7|A0A7D6ZFU7_9CLOTCellshape-determiningproteinMreBOS=ClostridiumintestinaleOX=36845GN=mreBPE=3SV=1	REV__tr|A0A7D6ZFU7|A0A7D6ZFU7_9CLOTCellshape-determiningproteinMreBOS=ClostridiumintestinaleOX=36845GN=mreBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.80615234375	2	524.308218	1046.60188	-1.3343	-0.00069956	-1.9683	-0.001032	-3.3026	-0.0017316	524.3077292741302	117.79	1.8803	116.44	116	117.88	-1.3444					65	35	2	0	0	0	0.44568	1	11090	11090		47.657	1.6851	1	1315600	+		26080	31981	21322	21349	29244	29244					0.08044600447965422
KRKKKKKK	8	Unmodified	_KRKKKKKK_					0	0	0		ENSG00000196663|ENST00000359520|TECPR2;nc|ENSG00000196663|O15040-2|TECPR2;TECPR2|p.S766Pfs*6|1|0.06|ENSG00000196663|chr14:102435113-102435113|T/-|frameshift_variant;ENST00000475181.1_1_3:112359734-112359896:-|nuORF;ENST00000439685.6_1_3:112358751-112359896:-|nuORF	ENSG00000196663|ENST00000359520|TECPR2;REV__ENSG00000072657|ENST00000261180|TRHDE;REV__ENSG00000055483|ENST00000449938|USP36;REV__ENSG00000088205|ENST00000263239|DDX18	REV__ENSG00000055483|ENST00000449938|USP36	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.34326171875	2	536.395485	1070.77642	-1.923	-0.0010315	-2.9346	-0.0015741	-4.8576	-0.0026056	536.3928841369807	45.172	0.20641	42.133	42.023	42.23	-3.0385					5	3	2	0	0	0	0.028476	1	2277	2277		8.8223	0	1	7747.9			26081	16711;8640;17173;16918	21323	21350	29245	29245					0.24385968655451506
KRKKRWNNLRN	11	Unmodified	_KRKKRWNNLRN_					0	0	0			REV__ENST00000462527.2_1_10:120816464-120817472:-|nuORF	REV__ENST00000462527.2_1_10:120816464-120817472:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.7911071777344	3	504.970925	1511.89095	0.16529	8.3466E-05	-1.856	-0.00093721	-1.6907	-0.00085374	504.9698241242454	38.021	0.54615	35.12	34.882	35.428	-2.9015					17	10	3	0	0	0	0.026497	1	1474	1474		9.6461	0.43434	1	20890	+		26082	26114	21324	21351	29246	29246					0.15547626399461478
KRKLESQRRRE	11	Unmodified	_KRKLESQRRRE_					0	0	0			REV__ENSG00000171467|ENST00000361428|ZNF318	REV__ENSG00000171467|ENST00000361428|ZNF318	MULTI-MSMS	OvCa9_classI_Rep3	3	495.95953369140625	3	495.962207	1484.86479	-6.9468	-0.0034453	-0.084622	-4.1969E-05	-7.0314	-0.0034873	495.96210445138047	163.05	2.2058	161.66	160.17	162.38	-1.3926					163	48	5	0	0	0	0.72552	2	14125	14125;14272		8.7993	1.3886	1	227040	+		26083	21615	21325	21352	29247;29248	29247					0.14175312437305365
KRKLHEELSS	10	Unmodified	_KRKLHEELSS_					0	0	0		CIR1|p.K405Nfs*42|1|0.15|ENSG00000138433|chr2:174348635-174348635|T/-|frameshift_variant;ENSG00000138433|ENST00000342016|CIR1	CIR1|p.K405Nfs*42|1|0.15|ENSG00000138433|chr2:174348635-174348635|T/-|frameshift_variant	CIR1|p.K405Nfs*42|1|0.15|ENSG00000138433|chr2:174348635-174348635|T/-|frameshift_variant	MSMS	OvCa9_classI_Rep3	3	613.8434448242188	2	613.846219	1225.67788	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.001	1	57.932	57.432	58.432	-3.0685								0	0	0	0.14661	1	2098	2098		15.642	0.77694	1				26084	581	21326	21353	29249	29249					0.07407275829109494
KRKMEFQRK	9	Unmodified	_KRKMEFQRK_					0	0	0			REV__PPP1R2|p.E173Rfs*24|1|0.04|ENSG00000184203|chr3:195519072-195519073|-/G|frameshift_variant	REV__PPP1R2|p.E173Rfs*24|1|0.04|ENSG00000184203|chr3:195519072-195519073|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	417.5754089355469	3	417.576525	1249.70774	0.52909	0.00022093	-3.1424	-0.0013122	-2.6133	-0.0010912	417.5751692049267	37.659	1.1432	34.766	34.541	35.685	-2.8925					38	22	2	0	0	0	0.47363	1	1408	1408		45.022	7.514	1	159850	+		26085	22410	21327	21354	29250	29250					0.0928793629343545
KRKMEFQRK	9	Unmodified	_KRKMEFQRK_					0	0	0			REV__PPP1R2|p.E173Rfs*24|1|0.04|ENSG00000184203|chr3:195519072-195519073|-/G|frameshift_variant	REV__PPP1R2|p.E173Rfs*24|1|0.04|ENSG00000184203|chr3:195519072-195519073|-/G|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		3	417.576525	1249.70774	-1.4767	-0.00061665	-1.1888	-0.00049643	-2.6656	-0.0011131	417.5759173442413	37.666	1.1336	34.956	34.633	35.766	-2.7097	0.094949	0.0014895	NaN	45.022	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43910	+		26086	22410	21327	21354							0.0928793629343545
KRKMEFQRK	9	Unmodified	_KRKMEFQRK_					0	0	0			REV__PPP1R2|p.E173Rfs*24|1|0.04|ENSG00000184203|chr3:195519072-195519073|-/G|frameshift_variant	REV__PPP1R2|p.E173Rfs*24|1|0.04|ENSG00000184203|chr3:195519072-195519073|-/G|frameshift_variant	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		3	417.576525	1249.70774	0.52909	0.00022093	-3.1424	-0.0013122	-2.6133	-0.0010912	417.5751692049267	37.659	1.1432	34.766	34.541	35.685	-2.8925	-0.094949	-0.0009578	NaN	45.022	38	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159850	+		26087	22410	21327	21354							0.0928793629343545
KRKNGELYQQ	10	Unmodified	_KRKNGELYQQ_					0	0	0		tr|A0A553SSN7|A0A553SSN7_NIACINitrate/nitritetransporterOS=NialliacirculansOX=1397GN=CEQ21_03340PE=3SV=1	tr|A0A553SSN7|A0A553SSN7_NIACINitrate/nitritetransporterOS=NialliacirculansOX=1397GN=CEQ21_03340PE=3SV=1	tr|A0A553SSN7|A0A553SSN7_NIACINitrate/nitritetransporterOS=NialliacirculansOX=1397GN=CEQ21_03340PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	632.3466796875	2	632.343843	1262.67313	-1.5963	-0.0010094	2.0012	0.0012654	0.4049	0.00025603	632.345049771065	99.719	1.3387	98.889	98.716	100.06	-0.83051					67	26	4	0	0	0	0.55359	1	9091	9091		47.657	4.0065	1	211480			26088	34394	21328	21355	29251	29251					0.05230391686313851
KRKNLEASH	9	Unmodified	_KRKNLEASH_					0	0	0		L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|199|3|sense	L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|199|3|sense	L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|199|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.2852783203125	2	541.806897	1081.59924	-0.63019	-0.00034144	0.50766	0.00027505	-0.12253	-6.6387E-05	541.8070344696465	42.376	1.0759	42.376	42.024	43.1	0					52	24	4	0	0	0	0.027462	1	2682	2682		26.693	5.746	1	1695000			26089	14690	21329	21356	29252	29252					0.06170468314644495
KRKQMRLNYRW	11	Unmodified	_KRKQMRLNYRW_					0	0	0		nc|ENSG00000131620|Q5XXA6-2|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;nc|ENSG00000131620|Q5XXA6-3|ANO1;ANO1|p.I577Sfs*11|1|0.24|ENSG00000131620|chr11:70161311-70161312|-/GC|frameshift_variant	nc|ENSG00000131620|Q5XXA6-2|ANO1	nc|ENSG00000131620|Q5XXA6-2|ANO1	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.281005859375	3	526.964783	1577.87252	-1.5873	-0.00083643	2.6489	0.0013959	1.0616	0.00055944	526.9670723775248	43.836	0.25818	43.836	43.694	43.952	0					8	5	2	0	0	0	0.026538	1	2934	2934		3.026	1.503	1	46674			26090	4077	21330	21357	29253	29253					0.1066974843324715
KRKQQGEHLL	10	Unmodified	_KRKQQGEHLL_					0	0	0		ENST00000507488.6_1_3:130569478-130569547:+|nuORF	ENST00000507488.6_1_3:130569478-130569547:+|nuORF	ENST00000507488.6_1_3:130569478-130569547:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	412.9103088378906	3	412.910561	1235.70985	1.4214	0.00058692	-1.2527	-0.00051726	0.1687	6.9657E-05	412.90997305484035	43.139	2.0837	40.43	40.016	42.099	-2.7097					93	41	4	0	0	0	0.59317	1	2389	2389		42.864	4.1107	1	208390			26091	12929	21331	21358	29254	29254					0.1014268830290348
KRKRKEVALCV	11	Unmodified	_KRKRKEVALCV_					0	0	0			REV__ENST00000526606.1_3_11:46570578-46615429:-|nuORF	REV__ENST00000526606.1_3_11:46570578-46615429:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	443.58575439453125	3	443.943096	1328.80746	-0.23114	-0.00010261	-4.0275	-0.001788	-4.2586	-0.0018906	443.94135980808187	20.215	0.77438	18.876	18.637	19.412	-1.3386					30	15	3	0	0	0	0.026042	1	22	22		14.694	4.1069	1	43999	+		26092	27144	21332	21359	29255	29255					0.15620753907387552
KRKRKQTEKER	11	Unmodified	_KRKRKQTEKER_					0	0	0			REV__ENST00000601980.1_1_19:53357334-53357582:-|nuORF	REV__ENST00000601980.1_1_19:53357334-53357582:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.26739501953125	3	496.30234	1485.88519	0.072971	3.6216E-05	1.6507	0.00081924	1.7237	0.00085545	496.30306842831465	57.197	0.56018	53.852	53.577	54.138	-3.3449					24	10	3	0	0	0	0.026401	1	3670	3670		17.167	11.468	1	68931	+		26093	28039	21333	21360	29256	29256					0.16168483097112585
KRKRKQTEKER	11	Unmodified	_KRKRKQTEKER_					0	0	0			REV__ENST00000601980.1_1_19:53357334-53357582:-|nuORF	REV__ENST00000601980.1_1_19:53357334-53357582:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	496.30234	1485.88519	-0.70828	-0.00035152	2.5486	0.0012649	1.8404	0.00091338	496.30346685509676	56.418	0.74374	53.614	53.275	54.018	-2.804	-0.11907	0.00055497	NaN	12.433	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51405	+		26094	28039	21333	21360							0.16168483097112585
KRKRLEDKLAR	11	Unmodified	_KRKRLEDKLAR_					0	0	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.30987548828125	3	471.631798	1411.87356	0.61341	0.0002893	2.6396	0.0012449	3.253	0.0015342	471.6329340666927	21.924	0.65756	20.586	20.422	21.079	-1.3386					15	12	2	0	0	0	0.025995	1	258	258		23.378	5.5448	1	19697	+		26095	19327	21334	21361	29257	29257					0.1841028607377666
KRKRQRSERLE	11	Unmodified	_KRKRQRSERLE_					0	0	0		SRCAP|p.L2600Afs*30|1|0.06|ENSG00000080603|chr16:30737837-30737838|-/G|frameshift_variant;nc|ENSG00000080603|Q6ZRS2-3|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;ENSG00000080603|ENST00000262518|SRCAP	SRCAP|p.L2600Afs*30|1|0.06|ENSG00000080603|chr16:30737837-30737838|-/G|frameshift_variant	SRCAP|p.L2600Afs*30|1|0.06|ENSG00000080603|chr16:30737837-30737838|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	495.9576721191406	3	495.962207	1484.86479	-4.8163	-0.0023887	-2.3422	-0.0011617	-7.1585	-0.0035504	495.96094978154576	162.14	1.4092	161.91	160.94	162.35	-0.22696					77	27	3	0	0	0	0.72516	1	16546	16546		13.508	3.404	1	83644			26096	1638	21335	21362	29258	29258					0.14175312437305365
KRKVPRNRIAE	11	Unmodified	_KRKVPRNRIAE_					0	0	0		ENST00000498418.5_1_22:45593059-45595943:-|nuORF;ENST00000474515.5_1_22:45593059-45598540:-|nuORF;nc|ENSG00000100364|Q6ICG6-3|KIAA0930;ENSG00000100364|ENST00000336156|KIAA0930;nc|ENSG00000100364|Q6ICG6-2|KIAA0930	ENST00000498418.5_1_22:45593059-45595943:-|nuORF	ENST00000498418.5_1_22:45593059-45595943:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	457.282470703125	3	456.28451	1365.8317	0.73479	0.00033528	1.2157	0.0005547	1.9505	0.00088998	456.2849517060909	58.742	1.1811	55.962	55.639	56.82	-2.7801					43	22	3	0	0	0	0.025908	1	4246	4246		41.08	13.436	1	40760			26097	2057	21336	21363	29259	29259					0.1634173038528388
KRKVSFAFR	9	Unmodified	_KRKVSFAFR_					0	0	0		tr|A0A7D7A1X1|A0A7D7A1X1_9CLOTPolysaccharidebiosynthesisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06090PE=4SV=1	tr|A0A7D7A1X1|A0A7D7A1X1_9CLOTPolysaccharidebiosynthesisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06090PE=4SV=1	tr|A0A7D7A1X1|A0A7D7A1X1_9CLOTPolysaccharidebiosynthesisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06090PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	569.8458251953125	2	569.845825	1137.6771	0.70876	0.00040389	-0.79562	-0.00045338	-0.086856	-4.9495E-05	569.8452383624614	66.591	2.2644	63.645	63.265	65.53	-2.9459					89	44	4	0	0	0	0.65371	1	2766	2766		25.574	8.106	1	226750			26098	36051	21337	21364	29260	29260					0.11376525970695184
KRKWAAQTI	9	Unmodified	_KRKWAAQTI_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	OvCa99_classI_Rep5	1	551.330322265625	2	551.330008	1100.64546	-0.63363	-0.00034934	-0.048368	-2.6667E-05	-0.682	-0.000376	551.3299742678406	39.265	0.56693	39.265	39.063	39.63	0					34	12	4	0	0	0	0.16524	1	2287	2287		82.305	13.518	1	1105000			26099	8756	21338	21365	29261	29261					0.09916533216733114
KRKYRIIDF	9	Unmodified	_KRKYRIIDF_					0	0	0		tr|A0A7D6VS28|A0A7D6VS28_9CLOTLargeribosomalsubunitproteinuL2OS=ClostridiumintestinaleOX=36845GN=rplBPE=3SV=1	tr|A0A7D6VS28|A0A7D6VS28_9CLOTLargeribosomalsubunitproteinuL2OS=ClostridiumintestinaleOX=36845GN=rplBPE=3SV=1	tr|A0A7D6VS28|A0A7D6VS28_9CLOTLargeribosomalsubunitproteinuL2OS=ClostridiumintestinaleOX=36845GN=rplBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	619.868408203125	2	619.87204	1237.72953	-3.8587	-0.0023919	-0.31006	-0.00019219	-4.1687	-0.0025841	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.72268	1	15582	15582		10.265	0	1	492670			26100	34980	21339	21366	29262	29262					0.1201706431365892
KRLDSLRKYS	10	Unmodified	_KRLDSLRKYS_					0	0	0		tr|A0A7D7A2W9|A0A7D7A2W9_9CLOTPcfJdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19305PE=4SV=1	tr|A0A7D7A2W9|A0A7D7A2W9_9CLOTPcfJdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19305PE=4SV=1	tr|A0A7D7A2W9|A0A7D7A2W9_9CLOTPcfJdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19305PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3673706054688	2	633.369861	1264.72517	-4.1446	-0.0026251	2.9938	0.0018962	-1.1508	-0.00072888	633.3716506579397	149.94	3.0119	148.99	147.85	150.86	-0.9512					218	59	5	0	0	0	0.80581	1	12818	12818		18.262	1.5447	1	281260			26101	36092	21340	21367	29263	29263					0.10339555100085818
KRLFIDIN	8	Unmodified	_KRLFIDIN_					0	0	0			REV__chr2:95592149-95594020|192|10.02|0.01|9.48|+|1|TRIM43,TRIM43|1	REV__chr2:95592149-95594020|192|10.02|0.01|9.48|+|1|TRIM43,TRIM43|1	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8037109375	2	509.805834	1017.59712	-0.41042	-0.00020923	-3.6368	-0.0018541	-4.0473	-0.0020633	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.7594	1	13582	13582		21.96	0.25755	1	150140	+		26102	16009	21341	21368	29264	29264					0.08902039576832976
KRLFLVSTR	9	Unmodified	_KRLFLVSTR_					0	0	0			REV__ENST00000430010.1_1_2:55451599-55452256:+|nuORF	REV__ENST00000430010.1_1_2:55451599-55452256:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.7678833007812	2	560.353483	1118.69241	0.72811	0.000408	-0.83355	-0.00046709	-0.10545	-5.9087E-05	560.3528080892867	62.402	0.5389	62.402	62.122	62.661	0					35	12	4	0	0	0	0.027403	1	5558	5558		90.37	18.492	1	950720	+		26103	25705	21342	21369	29265	29265					0.13781392767873513
KRLGSRKFN	9	Unmodified	_KRLGSRKFN_					0	0	0			REV__ENSG00000075035|ENST00000547525|WSCD2	REV__ENSG00000075035|ENST00000547525|WSCD2	MULTI-MSMS	OvCa9_classI_Rep2	2	553.33154296875	2	553.333082	1104.65161	-2.8766	-0.0015917	1.5395	0.00085183	-1.3372	-0.00073989	553.3337794849177	152.41	1.17	152.18	151.83	153	-0.22696					55	23	3	0	0	0	0.70177	1	15478	15478		17.365	1.7232	1	86016	+		26104	16959	21343	21370	29266	29266					0.10347051448297861
KRLHPAPG	8	Unmodified	_KRLHPAPG_					0	0	0			REV__nc|ENSG00000078487|Q9H0M4-3|ZCWPW1	REV__nc|ENSG00000078487|Q9H0M4-3|ZCWPW1	MULTI-MSMS	OvCa99_classI_Rep5	1	438.2650146484375	2	438.264136	874.51372	1.7194	0.00075355	-3.1424	-0.0013772	-1.423	-0.00062366	438.26265014927577	66.907	1.2325	66.907	66.372	67.604	0					63	30	3	0	0	0	0.74971	1	6252	6252		26.796	0	1	3607700	+		26105	26649	21344	21371	29267	29267					0.07144347919643224
KRLKDFQQ	8	Unmodified	_KRLKDFQQ_					0	0	0			REV__ENSG00000037042|ENST00000251412|TUBG2	REV__ENSG00000037042|ENST00000251412|TUBG2	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8073120117188	2	531.806365	1061.59818	-0.15092	-8.026E-05	-0.093261	-4.9597E-05	-0.24418	-0.00012986	531.8061431998083	41.419	1.3311	38.709	38.438	39.769	-2.7097					48	26	3	0	0	0	0.64026	1	2179	2179		55.504	4.1688	1	199510	+		26106	16610	21345	21372	29268	29268					0.06984253945756791
KRLKEYRVF	9	Unmodified	_KRLKEYRVF_					0	0	0		ENST00000424459.7_2_5:56471743-56471803:+|nuORF	ENST00000424459.7_2_5:56471743-56471803:+|nuORF	ENST00000424459.7_2_5:56471743-56471803:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8684692382812	2	619.87204	1237.72953	-3.6059	-0.0022352	-0.65337	-0.00040501	-4.2593	-0.0026402	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.65476	1	12905	12905		25.45	0	1	664560			26107	11713	21346	21373	29269	29269					0.12017064313636183
KRLKFLIDDL	10	Unmodified	_KRLKFLIDDL_					0	0	0		tr|A0A7D7ADW5|A0A7D7ADW5_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00575PE=4SV=1	tr|A0A7D7ADW5|A0A7D7ADW5_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00575PE=4SV=1	tr|A0A7D7ADW5|A0A7D7ADW5_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00575PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	420.9272766113281	3	420.927329	1259.76016	1.2533	0.00052756	-1.2851	-0.00054095	-0.031812	-1.3391E-05	420.9267661520996	69.682	2.4064	66.928	66.572	68.979	-2.754					153	47	6	0	0	0	0.55109	1	3109	3109		47.96	0	1	1507300			26108	36244	21347	21374	29270	29270					0.1406679790804901
KRLKRALAE	9	Unmodified	_KRLKRALAE_					0	0	0		tr|A0A7D6W2Z0|A0A7D6W2Z0_9CLOTTypeIIsecretionsystemFfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07875PE=4SV=1	tr|A0A7D6W2Z0|A0A7D6W2Z0_9CLOTTypeIIsecretionsystemFfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07875PE=4SV=1	tr|A0A7D6W2Z0|A0A7D6W2Z0_9CLOTTypeIIsecretionsystemFfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07875PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.8511962890625	2	542.851107	1083.68766	0.19137	0.00010389	-0.10052	-5.4567E-05	0.09085	4.9318E-05	542.8508997812937	34.107	1.1485	31.319	31.051	32.2	-2.7881					51	22	3	0	0	0	0.68424	1	1001	1001		21.96	1.013	1	181430			26109	35443	21348	21375	29271	29271					0.14916508625105962
KRLLDNIN	8	Unmodified	_KRLLDNIN_					0	0	0		tr|A0A553SLT8|A0A553SLT8_NIACISugarphosphateisomerase/epimeraseOS=NialliacirculansOX=1397GN=CEQ21_21290PE=4SV=1	tr|A0A553SLT8|A0A553SLT8_NIACISugarphosphateisomerase/epimeraseOS=NialliacirculansOX=1397GN=CEQ21_21290PE=4SV=1	tr|A0A553SLT8|A0A553SLT8_NIACISugarphosphateisomerase/epimeraseOS=NialliacirculansOX=1397GN=CEQ21_21290PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.2942810058594	2	493.293091	984.571629	0.8364	0.00041259	-1.5465	-0.00076286	-0.71006	-0.00035027	493.29220672489055	32.044	1.3124	29.349	28.84	30.153	-2.6954					72	40	2	0	0	0	0.74038	1	735	735		12.207	0	1	42685			26110	33763	21349	21376	29272	29272					0.07872565054412917
KRLLELIFHWL	11	Unmodified	_KRLLELIFHWL_					0	0	0			REV__ENSG00000105722|ENST00000222329|ERF	REV__ENSG00000105722|ENST00000222329|ERF	MULTI-SECPEP	OvCa9_classI_Rep3	3	490.27764892578125	3	489.966007	1466.87619	-1.4586	-0.00071467	-3.2167	-0.0015761	-4.6753	-0.0022907	490.2986578812723	86.382	0.14948	84.162	84.037	84.187	-2.2204					4	2	2	0	0	0	0.026497	1	5119	5119		9.6461	6.4348	1	8185.7	+		26111	17755	21350	21377	29273	29273					0.16142741478734024
KRLLFMLVF	9	Unmodified	_KRLLFMLVF_					0	0	0			REV__ENSG00000048462|ENST00000053243|TNFRSF17	REV__ENSG00000048462|ENST00000053243|TNFRSF17	MULTI-MSMS	OvCa9_classI_Rep2	2	583.8583984375	2	583.859555	1165.70456	-4.2591	-0.0024867	3.1532	0.001841	-1.1059	-0.00064568	583.8612282732444	154.9	1.2136	154.67	154.34	155.56	-0.22696					82	33	4	0	0	0	0.65476	1	15766	15766		25.45	4.5032	1	148650	+		26112	16669	21351	21378	29274	29274					0.12833293186736228
KRLLVFMDD	9	Unmodified	_KRLLVFMDD_					0	0	0		nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;DNAH10|p.N3904Vfs*37|1|0.07|ENSG00000197653|chr12:123926777-123926778|-/GGTACAGAGAAGTCCCTGCC|frameshift_variant	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.80908203125	2	568.810259	1135.60597	-0.21166	-0.00012039	4.4193	0.0025138	4.2077	0.0023934	569.3154156530367	29.842	0.29988	29.842	29.686	29.986	0					8	5	2	0	0	0	0.027462	1	1100	1100		29.15	3.6994	1	11578			26113	8733	21352	21379	29275	29275					0.04358645151023666
KRLLVRNWFIN	11	Unmodified	_KRLLVRNWFIN_					0	0	0		ENSG00000181698|ENST00000641665|OR5T1	ENSG00000181698|ENST00000641665|OR5T1	ENSG00000181698|ENST00000641665|OR5T1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.95806884765625	3	486.961256	1457.86194	-7.2825	-0.0035463	2.5142	0.0012243	-4.7683	-0.002322	486.9623381995862	161.08	3.4384	159.71	158.52	161.96	-1.3692					219	70	4	0	0	0	0.72548	1	13913	13913		9.2118	0.41249	1	133400			26114	7947	21353	21380	29276	29276					0.15132089050462127
KRLSKFNYLL	10	Unmodified	_KRLSKFNYLL_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5;DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant;DNAH5|p.M2992Ifs*5|1|0.15|ENSG00000039139|chr5:13777331-13777332|-/AA|frameshift_variant;DNAH5|p.M2992Sfs*34|1|0.14|ENSG00000039139|chr5:13777333-13777334|-/ACAGATAGATAGATAGACAGACAGA|frameshift_variant	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-MSMS	OvCa9_classI_Rep3	3	427.93017578125	3	427.92744	1280.76049	1.7119	0.00073257	3.8354	0.0016413	5.5473	0.0023739	427.9290217090034	65.493	1.4717	62.547	62.198	63.67	-2.9459					92	28	4	0	0	0	0.72319	1	2610	2610		26.063	0	1	349590			26115	1103	21354	21381	29277	29277					0.13134217627884937
KRLSLLSHAGR	11	Unmodified	_KRLSLLSHAGR_					0	0	0		nc|ENSG00000175920|Q18PE1-2|DOK7;chr4:3500403-3500692|393|16.8|0.0|20.68|+|ENST00000643608|DOK7,DOK7;chr4:3496862-3500251|354|12.82|0.0|20.29|+|ENST00000643608|DOK7,DOK7;chr4:3493483-3496820|384|12.32|0.64|4.28|+|ENST00000643608|DOK7,DOK7;ENSG00000175920|ENST00000340083|DOK7;nc|ENSG00000175920|Q18PE1-3|DOK7	nc|ENSG00000175920|Q18PE1-2|DOK7	nc|ENSG00000175920|Q18PE1-2|DOK7	MULTI-MSMS	OvCa9_classI_Rep3	3	619.3721313476562	2	619.37802	1236.74149	-5.649	-0.0034989	-4.3697	-0.0027065	-10.019	-0.0062054	619.3752552398936	159.28	1.2139	158.02	157.66	158.88	-1.267					65	23	4	0	0	0	0.72473	1	13753	13753		19.104	3.0967	1	112740			26116	490	21355	21382	29278	29278					0.1325868105684549
KRLTLGEALQH	11	Unmodified	_KRLTLGEALQH_					0	0	0		FDPS-CLK2|1|fusion;FDPS-CLK2|2|fusion;nc|ENSG00000176444|P49760-3|CLK2;ENSG00000176444|ENST00000368361|CLK2	FDPS-CLK2|1|fusion	FDPS-CLK2|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3661499023438	2	633.369861	1264.72517	-3.894	-0.0024663	2.7981	0.0017723	-1.0959	-0.00069408	633.3715080583703	149.82	2.9263	149.6	148.42	151.35	-0.22696					170	58	4	0	0	0	0.71789	1	15227	15227		23.523	2.5758	1	116220			26117	7610	21356	21383	29279	29279					0.1033955510006308
KRLVKRIN	8	Unmodified	_KRLVKRIN_					0	0	0			REV__ENSG00000117643|ENST00000374332|MAN1C1	REV__ENSG00000117643|ENST00000374332|MAN1C1	MULTI-MSMS	OvCa99_classI_Rep5	1	513.851318359375	2	513.848368	1025.68218	1.1554	0.00059372	3.5627	0.0018307	4.7182	0.0024244	513.8500598427398	143.75	1.2297	143.75	143.41	144.64	0					60	24	3	0	0	0	0.71369	1	16841	16841		40.573	1.3198	1	200580	+		26118	18363	21357	21384	29280	29280					0.17036829833318734
KRLVPDKPL	9	Unmodified	_KRLVPDKPL_					0	0	0			REV__nc|ENSG00000110888|Q6IMN6-4|CAPRIN2	REV__nc|ENSG00000110888|Q6IMN6-4|CAPRIN2	MULTI-MSMS	OvCa9_classI_Rep3	3	533.3404541015625	2	533.342584	1064.67061	-5.4486	-0.002906	1.332	0.00071043	-4.1166	-0.0021955	533.3431726379797	156.49	1.098	155.32	155.02	156.12	-1.1707					66	21	4	0	0	0	0.67509	1	13487	13487		23.042	2.0956	1	385900	+		26119	18007	21358	21385	29281	29281					0.1408658801931324
KRLYKKKIK	9	Unmodified	_KRLYKKKIK_					0	0	0			REV__ENST00000543809.5_1_12:28605516-28605582:+|nuORF	REV__ENST00000543809.5_1_12:28605516-28605582:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.23138427734375	3	402.279926	1203.81795	1.4567	0.00058602	3.0757	0.0012373	4.5324	0.0018233	402.28118103941483	32.868	0.24092	32.868	32.7	32.941	0					5	4	2	0	0	0	0.027185	1	1458	1458		71.877	7.6702	1	16564	+		26120	27392	21359	21386	29282	29282					0.22419104624100328
KRLYQLAQFV	10	Unmodified	_KRLYQLAQFV_					0	0	0			REV__ENSG00000095564|ENST00000265990|BTAF1	REV__ENSG00000095564|ENST00000265990|BTAF1	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3665771484375	2	633.371872	1264.72919	-3.894	-0.0024663	-0.37753	-0.00023912	-4.2715	-0.0027055	633.3715080583703	149.82	2.9263	149.6	148.42	151.35	-0.22696					170	58	4	0	0	0	0.71192	2	15238	15174;15238		29.15	7.1897	1	116220	+		26121	17292	21360	21387	29283;29284	29284					0.10741644593804267
KRLYQLAQFV	10	Unmodified	_KRLYQLAQFV_					0	0	0			REV__ENSG00000095564|ENST00000265990|BTAF1	REV__ENSG00000095564|ENST00000265990|BTAF1	MULTI-MSMS	OvCa9_classI_Rep2	2	633.368896484375	2	633.371872	1264.72919	-4.5141	-0.0028591	0.26314	0.00016666	-4.251	-0.0026925	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.71192	2	15655	15458;15655		29.15	3.5755	1	369460	+		26122	17292	21360	21387	29285;29286	29286					0.10741644593804267
KRMAEKIIE	9	Oxidation (M)	_KRM(Oxidation (M))AEKIIE_		KRM(1)AEKIIE		KRM(77)AEKIIE	0	0	1		ENSG00000166169|ENST00000370162|POLL;nc|ENSG00000166169|Q9UGP5-2|POLL	ENSG00000166169|ENST00000370162|POLL	ENSG00000166169|ENST00000370162|POLL	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3206787109375	2	567.320991	1132.62743	-1.2368	-0.00070167	-1.763	-0.0010002	-2.9998	-0.0017018	567.3201786014721	85.424	2.0958	83.204	82.744	84.84	-2.2204					134	41	5	0	0	0	0.1944	1	5021	5021		77.318	8.5308	1	1900400			26123	6646	21361	21388	29287	29287		207			0.06642030179705216
KRNDYVHAL	9	Unmodified	_KRNDYVHAL_					0	0	0		nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-2|PRMT1	nc|ENSG00000126457|Q99873-2|PRMT1	MULTI-MSMS	OvCa99_classI_Rep5	1	558.3009033203125	2	558.301447	1114.58834	0.059026	3.2954E-05	-0.50724	-0.00028319	-0.44822	-0.00025024	558.301071715443	42.776	0.51775	42.776	42.496	43.014	0					35	11	5	0	0	0	0.3249	1	2764	2764		60.118	14.166	1	1798000			26124	3781	21362	21389	29288	29288					0.03563065940352317
KRNILGDHEL	10	Unmodified	_KRNILGDHEL_					0	0	0			REV__tr|A0A7D6VMN9|A0A7D6VMN9_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12515PE=4SV=1	REV__tr|A0A7D6VMN9|A0A7D6VMN9_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12515PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	598.3395385742188	2	597.833111	1193.65167	1.9112	0.0011426	-2.4085	-0.0014399	-0.49733	-0.00029732	597.8313962652186	129.38	1.5576	129.38	129.12	130.68	0					110	32	4	0	0	0	0.6104	1	15055	15055		40.778	1.5253	1	1050800	+		26125	31141	21363	21390	29289	29289					0.06259006657637656
KRNLQVSL	8	Unmodified	_KRNLQVSL_					0	0	0		L1MDa_dup2778|chr7:47340719-47342131:-|2.305162096757514|0.4082244758708406|2.5|429.0|31|2|sense	L1MDa_dup2778|chr7:47340719-47342131:-|2.305162096757514|0.4082244758708406|2.5|429.0|31|2|sense	L1MDa_dup2778|chr7:47340719-47342131:-|2.305162096757514|0.4082244758708406|2.5|429.0|31|2|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.2981262207031	2	479.295633	956.576714	-0.079369	-3.8041E-05	3.8756	0.0018575	3.7962	0.0018195	479.29735582244143	116.79	1.2501	115.43	115.04	116.29	-1.3645					65	23	3	0	0	0	0.64026	1	10894	10894		55.504	9.5523	1	647920			26126	14613	21364	21391	29290	29290					0.09668868917037798
KRNRHRFR	8	Unmodified	_KRNRHRFR_					0	0	0			REV__ENSG00000109072|ENST00000226218|VTN	REV__ENSG00000109072|ENST00000226218|VTN	MULTI-MSMS	OvCa99_classI_Rep5	1	585.3467407226562	2	585.347389	1168.68023	-0.35457	-0.00020755	-0.82602	-0.00048351	-1.1806	-0.00069106	585.3468564945299	22.655	0.50973	22.655	22.431	22.94	0					28	11	3	0	0	0	0.73288	1	229	229		35.201	1.0282	1	244510	+		26127	17915	21365	21392	29291	29291					0.10263213868074672
KRNRYWRCFYY	11	Unmodified	_KRNRYWRCFYY_					0	0	0			REV__ENST00000503689.1_1_4:75248329-75250522:+|nuORF	REV__ENST00000503689.1_1_4:75248329-75250522:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.2644653320312	3	552.273505	1653.79869	0.79393	0.00043847	0.7333	0.00040498	1.5272	0.00084345	552.6083079299328	153.34	1.3737	153.34	152.9	154.27	0					54	27	4	0	0	0	0.026559	1	18053	18053		1.523	0.10423	1	118270	+		26128	18709	21366	21393	29292	29292					-0.002062197290797485
KRNSSVAIL	9	Unmodified	_KRNSSVAIL_					0	0	0			REV__ENSG00000241322|ENST00000395906|FBXW10B;REV__nc|ENSG00000171931|Q5XX13-3|FBXW10	REV__nc|ENSG00000171931|Q5XX13-3|FBXW10	MULTI-MSMS	OvCa9_classI_Rep3	3	494.30120849609375	2	494.300916	986.587279	1.1771	0.00058186	2.3792	0.0011761	3.5564	0.0017579	494.3019240355176	126.28	1.1552	125.2	124.86	126.02	-1.0715					43	21	3	0	0	0	0.42676	1	9858	9858		49.442	5.3247	1	106780	+		26129	21658;23446	21367	21394	29293	29293					0.09344851571484014
KRPGGSTFT	9	Unmodified	_KRPGGSTFT_					0	0	0		ENSG00000105464|ENST00000263269|GRIN2D;GRIN2D|p.S691Lfs*18|1|0.08|ENSG00000105464|chr19:48419795-48419795|C/-|frameshift_variant;RHPN2-GRIN2D|1|fusion	ENSG00000105464|ENST00000263269|GRIN2D;RHPN2-GRIN2D|1|fusion	RHPN2-GRIN2D|1|fusion	MSMS	OvCa99_classI_Rep5	1	475.75799560546875	2	475.756341	949.498129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.323	1	55.323	54.823	55.823	0								0	0	0	0.17066	1	4519	4519		49.442	4.9105	1				26130	32786;2461	21368	21395	29294	29294					0.021360166119507085
KRPGRPAS	8	Unmodified	_KRPGRPAS_					0	0	0			REV__nc|ENSG00000129993|O75081-5|CBFA2T3	REV__nc|ENSG00000129993|O75081-5|CBFA2T3	MULTI-MSMS	OvCa9_classI_Rep2	2	434.7586364746094	2	434.759218	867.503883	-0.54476	-0.00023684	0.73073	0.00031769	0.18597	8.0851E-05	434.7594502813862	138.35	2.0585	138.12	137.54	139.6	-0.22697					104	41	4	0	0	0	0.75241	1	13862	13862		25.45	1.2474	1	279250	+		26131	18913	21369	21396	29295	29295					0.06483159914273529
KRPGRPPKN	9	Unmodified	_KRPGRPPKN_					0	0	0		nc|ENSG00000156983|P55201-3|BRPF1;nc|ENSG00000156983|P55201|BRPF1;ENSG00000156983|ENST00000383829|BRPF1	nc|ENSG00000156983|P55201-3|BRPF1	nc|ENSG00000156983|P55201-3|BRPF1	MULTI-MSMS	OvCa9_classI_Rep2	2	525.3208618164062	2	525.319974	1048.6254	0.086273	4.5321E-05	2.0827	0.0010941	2.169	0.0011394	525.3209005823802	108.58	1.5334	108.35	108.03	109.56	-0.22498					66	30	4	0	0	0	0.53957	1	10182	10182		38.806	3.6541	1	308970			26132	5868	21370	21397	29296	29296					0.10302782276789912
KRPKLAGVLV	10	Unmodified	_KRPKLAGVLV_					0	0	0		tr|A0A553SI44|A0A553SI44_NIACISite-2proteasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_14160PE=3SV=1	tr|A0A553SI44|A0A553SI44_NIACISite-2proteasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_14160PE=3SV=1	tr|A0A553SI44|A0A553SI44_NIACISite-2proteasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_14160PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.7803344726562	2	540.866226	1079.7179	0.69434	0.00037555	1.6084	0.00086991	2.3027	0.0012455	540.8667433654826	101.5	0.67349	101.5	101.15	101.82	0					26	15	2	0	0	0	0.027021	1	11298	11298		29.15	1.2673	1	324200			26133	33341	21371	21398	29297	29297					0.18122867290298927
KRPNINVQP	9	Unmodified	_KRPNINVQP_					0	0	0			REV__nc|ENSG00000249715|A0AVI2-4|FER1L5	REV__nc|ENSG00000249715|A0AVI2-4|FER1L5	MULTI-MSMS	OvCa9_classI_Rep2	2	533.3123168945312	2	533.311815	1064.60908	-1.0201	-0.00054405	0.69126	0.00036866	-0.32887	-0.00017539	533.3120608238993	40.28	1.7779	37.571	37.202	38.98	-2.7097					89	35	4	0	0	0	0.55588	1	2058	2058		37.159	1.5408	1	555430	+		26134	23490	21372	21399	29298	29298					0.07935656320046292
KRPPDVVL	8	Unmodified	_KRPPDVVL_					0	0	0			REV__tr|A0A553SGK9|A0A553SGK9_NIACI23SrRNA(Uracil(1939)-C(5))-methyltransferaseRlmDOS=NialliacirculansOX=1397GN=rlmDPE=3SV=1	REV__tr|A0A553SGK9|A0A553SGK9_NIACI23SrRNA(Uracil(1939)-C(5))-methyltransferaseRlmDOS=NialliacirculansOX=1397GN=rlmDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	462.2874450683594	2	462.287277	922.560001	-1.6663	-0.0007703	0.90288	0.00041739	-0.7634	-0.00035291	462.28766330557994	85.301	1.5459	83.81	83.357	84.903	-1.4906					91	30	4	0	0	0	0.56113	1	7410	7410		71.378	5.5747	1	1328200	+		26135	29715	21373	21400	29299	29299					0.09562368031083679
KRPRSHLKRDW	11	Unmodified	_KRPRSHLKRDW_					0	0	0			REV__ENSG00000148925|ENST00000278174|BTBD10	REV__ENSG00000148925|ENST00000278174|BTBD10	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.28778076171875	3	493.619892	1477.83785	-0.82613	-0.00040779	-0.96272	-0.00047522	-1.7888	-0.00088301	493.61952974125325	28.713	0.25025	28.713	28.588	28.838	0					6	4	2	0	0	0	0.026401	1	966	966		12.433	0	1	16468	+		26136	20136	21374	21401	29300	29300					0.11804248616795121
KRPRVAVT	8	Unmodified	_KRPRVAVT_					0	0	0		nc|ENSG00000184672|Q86SE5-2|RALYL;ENSG00000184672|ENST00000521268|RALYL;nc|ENSG00000184672|Q86SE5-3|RALYL	nc|ENSG00000184672|Q86SE5-2|RALYL	nc|ENSG00000184672|Q86SE5-2|RALYL	MULTI-MSMS	OvCa9_classI_Rep2	2	463.79815673828125	2	463.798343	925.582134	0.21037	9.7568E-05	-1.0086	-0.0004678	-0.79827	-0.00037024	463.7978667804196	70.561	4.2201	67.99	67.714	71.934	-2.5707					173	80	4	0	0	0	0.73288	1	5679	5679		35.201	3.2459	1	2590100			26137	8181	21375	21402	29301	29301					0.11636592499519338
KRPSSVKVF	9	Unmodified	_KRPSSVKVF_					0	0	0		ENSG00000104824|ENST00000221419|HNRNPL;nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000595443.5_1_19:39327988-39329682:-|nuORF;ENST00000595164.5_1_19:39327364-39331218:-|nuORF;ENST00000597731.1_1_19:39327364-39331218:-|nuORF;ENST00000568980.1_1_15:34781237-34781759:-|nuORF	ENSG00000104824|ENST00000221419|HNRNPL	ENSG00000104824|ENST00000221419|HNRNPL	MULTI-MSMS	OvCa99_classI_Rep5	1	524.3098754882812	2	524.319109	1046.62366	-0.76442	-0.0004008	-0.11055	-5.7962E-05	-0.87497	-0.00045876	524.3190862553206	40.456	1.305	40.456	40.2	41.505	0					93	28	7	0	0	0	0.46356	1	2448	2448		45.972	3.5761	1	5753900			26138	2394	21376	21403	29302	29302					0.10221728468172842
KRPVAAMI	8	Unmodified	_KRPVAAMI_					0	0	0		ENST00000463988.1_1_1:31766057-31769628:-|nuORF	ENST00000463988.1_1_1:31766057-31769628:-|nuORF	ENST00000463988.1_1_1:31766057-31769628:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	443.2726745605469	2	443.270573	884.526593	0.83529	0.00037026	3.5014	0.001552	4.3366	0.0019223	443.27205335230417	138.39	1.523	138.16	137.68	139.21	-0.22696					79	30	3	0	0	0	0.74595	1	13854	13854		14.664	0	1	138730			26139	12237	21377	21404	29303	29303					0.07971042987526289
KRPVAAMI	8	Unmodified	_KRPVAAMI_					0	0	0		ENST00000463988.1_1_1:31766057-31769628:-|nuORF	ENST00000463988.1_1_1:31766057-31769628:-|nuORF	ENST00000463988.1_1_1:31766057-31769628:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	443.27386474609375	2	443.270573	884.526593	1.1525	0.00051086	2.9913	0.001326	4.1438	0.0018368	443.27180064343105	139.52	2.0991	138.02	137.22	139.32	-1.4952					91	40	3	0	0	0	0.75991	1	13584	13584		21.702	1.2205	1	858700			26140	12237	21377	21404	29304	29304					0.07971042987526289
KRPVIVKVL	9	Unmodified	_KRPVIVKVL_					0	0	0		nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	MULTI-MSMS	OvCa99_classI_Rep5	1	526.3728637695312	2	526.371144	1050.72774	-0.17519	-9.2214E-05	-0.61856	-0.00032559	-0.79375	-0.00041781	526.3707377631758	57.119	0.47791	57.119	56.875	57.353	0					36	10	4	0	0	0	0.38529	2	4766	4766;4788		53.351	39.824	1	4984100			26141	6329	21378	21405	29305;29306	29305					0.20440055295694037
KRPVKGPPPMA	11	Unmodified	_KRPVKGPPPMA_					0	0	0			REV__ENST00000527206.1_1_11:118992311-118998053:+|nuORF	REV__ENST00000527206.1_1_11:118992311-118998053:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3411865234375	2	589.347343	1176.68013	-4.3129	-0.0025418	-3.2634	-0.0019233	-7.5763	-0.0044651	589.3453728975387	144.79	3.9151	143.81	141.71	145.63	-0.97299					242	78	5	0	0	0	0.71191	1	12121	12121		25.574	2.0514	1	192050	+		26142	27149	21379	21406	29307	29307					0.09886033033194508
KRPVKGPPPMA	11	Unmodified	_KRPVKGPPPMA_					0	0	0			REV__ENST00000527206.1_1_11:118992311-118998053:+|nuORF	REV__ENST00000527206.1_1_11:118992311-118998053:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3433227539062	2	589.347343	1176.68013	-5.1334	-0.0030254	-2.3752	-0.0013998	-7.5086	-0.0044252	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.70518	1	12795	12795		27.882	4.3595	1	589610	+		26143	27149	21379	21406	29308	29308					0.09886033033194508
KRPVNVPF	8	Unmodified	_KRPVNVPF_					0	0	0		KCNA4|p.C325Afs*18|1|0.1|ENSG00000182255|chr11:30011710-30011710|G/-|frameshift_variant;ENSG00000182255|ENST00000328224|KCNA4	KCNA4|p.C325Afs*18|1|0.1|ENSG00000182255|chr11:30011710-30011710|G/-|frameshift_variant	KCNA4|p.C325Afs*18|1|0.1|ENSG00000182255|chr11:30011710-30011710|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	478.7851257324219	2	478.787444	955.560336	-2.4635	-0.0011795	-1.8767	-0.00089854	-4.3402	-0.0020781	478.7864521794397	145.79	1.5385	145.57	144.98	146.52	-0.22696					81	30	4	0	0	0	0.75915	1	14766	14766		20.482	2.1574	1	230950			26144	7985	21380	21407	29309	29309					0.08077787750949028
KRPWKEPVKA	10	Unmodified	_KRPWKEPVKA_					0	0	0		ENSG00000162104|ENST00000294016|ADCY9	ENSG00000162104|ENST00000294016|ADCY9	ENSG00000162104|ENST00000294016|ADCY9	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8673706054688	2	619.87204	1237.72953	-3.8587	-0.0023919	-0.31006	-0.00019219	-4.1687	-0.0025841	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.78463	1	15577	15577		20.947	0.95016	1	492670			26145	6157	21381	21408	29310	29310					0.1201706431365892
KRQAKYTE	8	Unmodified	_KRQAKYTE_					0	0	0		nc|ENSG00000196369|P0DMP2|SRGAP2B;ENSG00000196369|ENST00000641863|SRGAP2B;SRGAP2|p.D724Vfs*88|1|0.04|ENSG00000266028|chr1:206450460-206450460|A/-|frameshift_variant;ENSG00000266028|ENST00000573034|SRGAP2;ENST00000483628.1_1:206566231-206579954:+|nuORF	nc|ENSG00000196369|P0DMP2|SRGAP2B	nc|ENSG00000196369|P0DMP2|SRGAP2B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.3203735351562	2	512.282723	1022.55089	-1.0855	-0.00055607	1.374	0.00070386	0.2885	0.00014779	512.2833379821747	55.188	0.96948	51.928	51.632	52.601	-3.2595					32	18	2	0	0	0	0.028476	1	3436	3436		35.618	0	1	74070			26146	8598	21382	21409	29311	29311					0.040519746747463614
KRQEAIFEL	9	Unmodified	_KRQEAIFEL_					0	0	0		ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-3|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3	ENSG00000163947|ENST00000296315|ARHGEF3	ENSG00000163947|ENST00000296315|ARHGEF3	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3194580078125	2	567.319306	1132.62406	-1.5919	-0.00090313	1.8841	0.0010689	0.29214	0.00016573	567.3204758129912	84.581	1.3452	83.034	82.745	84.091	-1.5462					89	26	5	0	0	0	0.070405	5	7288	7276;7282;7288;7300;7312		107.01	19.311	1	1915100			26147	6385	21383	21410	29312;29313;29314;29315;29316	29314					0.06305103397380662
KRQEAIFEL	9	Unmodified	_KRQEAIFEL_					0	0	0		ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-3|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3	ENSG00000163947|ENST00000296315|ARHGEF3	ENSG00000163947|ENST00000296315|ARHGEF3	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3202514648438	2	567.319306	1132.62406	-1.2368	-0.00070167	1.2078	0.00068523	-0.028977	-1.6439E-05	567.3201786014721	85.424	2.0958	83.204	82.744	84.84	-2.2204					134	41	5	0	0	0	0.064985	4	5015	5015;5026;5032;5051		110.12	19.75	1	1900400			26148	6385	21383	21410	29317;29318;29319;29320	29317					0.06305103397380662
KRQEAIFEL	9	Unmodified	_KRQEAIFEL_					0	0	0		ENSG00000163947|ENST00000296315|ARHGEF3;nc|ENSG00000163947|Q9NR81-3|ARHGEF3;nc|ENSG00000163947|Q9NR81-2|ARHGEF3	ENSG00000163947|ENST00000296315|ARHGEF3	ENSG00000163947|ENST00000296315|ARHGEF3	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3201904296875	2	567.319306	1132.62406	1.937	0.0010989	-1.933	-0.0010966	0.00398	2.2579E-06	567.3183195729122	86.015	1.9422	83.369	83.042	84.984	-2.6463					114	38	5	0	0	0	0.084918	5	7254	7254;7266;7291;7305;7318		101.25	13.441	1	2305000			26149	6385	21383	21410	29321;29322;29323;29324;29325	29321					0.06305103397380662
KRQKCPMRGL	10	Unmodified	_KRQKCPMRGL_					0	0	0			REV__nc|ENSG00000104442|Q9NVT9-2|ARMC1	REV__nc|ENSG00000104442|Q9NVT9-2|ARMC1	MULTI-MSMS	OvCa9_classI_Rep2	2	608.836181640625	2	608.841902	1215.66925	-3.9035	-0.0023766	-4.2546	-0.0025904	-8.1581	-0.004967	608.8391511731406	151.54	1.2369	151.31	150.94	152.18	-0.22697					74	24	4	0	0	0	0.72319	1	15394	15394		27.882	4.8398	1	158260	+		26150	28779	21384	21411	29326	29326					0.07004307387251174
KRQKQINP	8	Unmodified	_KRQKQINP_					0	0	0			REV__nc|ENSG00000140750|Q68EM7-2|ARHGAP17;REV__nc|ENSG00000006740|Q17R89-3|ARHGAP44	REV__nc|ENSG00000006740|Q17R89-3|ARHGAP44	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.83428955078125	2	506.306532	1010.59851	-0.92645	-0.00046907	-3.0664	-0.0015526	-3.9929	-0.0020216	506.80573270825914	37.063	0.49845	37.063	36.707	37.205	0					17	10	3	0	0	0	0.028476	1	2014	2014		50.025	5.6474	1	71357	+		26151	16424;19699	21385	21412	29327	29327					0.0936367366560944
KRQLPASVF	9	Unmodified	_KRQLPASVF_					0	0	0		ENST00000416247.3_1_6:11134852-11134888:+|nuORF	ENST00000416247.3_1_6:11134852-11134888:+|nuORF	ENST00000416247.3_1_6:11134852-11134888:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.2692260742188	2	523.311284	1044.60801	-1.1095	-0.0005806	-1.4658	-0.00076705	-2.5752	-0.0013477	523.3101875543963	69.42	0.44075	65.939	65.713	66.153	-3.4812					13	8	2	0	0	0	0.027462	1	5203	5203		53.351	21.397	1	24476			26152	11601	21386	21413	29328	29328					0.08749441951113113
KRQPAVASP	9	Unmodified	_KRQPAVASP_					0	0	0			REV__nc|ENSG00000169180|Q96QU8-2|XPO6	REV__nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-MSMS	OvCa99_classI_Rep5	1	477.2801513671875	2	477.279983	952.545414	0.17022	8.1241E-05	-0.50363	-0.00024037	-0.33341	-0.00015913	477.2796555598478	32.772	1.2774	32.772	32.403	33.681	0					54	25	3	0	0	0	0.31747	1	1448	1448		60.972	4.2509	1	980030	+		26153	21438	21387	21414	29329	29329					0.06724295882941078
KRQPVMISH	9	Unmodified	_KRQPVMISH_					0	0	0			REV__ENST00000261798.9_1_5:148872814-148873015:-|nuORF	REV__ENST00000261798.9_1_5:148872814-148873015:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.304931640625	2	548.308218	1094.60188	-1.829	-0.0010029	-2.6766	-0.0014676	-4.5056	-0.0024705	548.3065012456914	119.53	0.46942	118.19	117.88	118.35	-1.3444					10	8	2	0	0	0	0.027462	1	11226	11226		27.882	10.517	1	11931	+		26154	23958	21388	21415	29330	29330					0.05836600447969431
KRQRVIRRHRL	11	Unmodified	_KRQRVIRRHRL_					0	0	0		nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2;MYCBP2|p.D2940Mfs*5|1|0.04|ENSG00000005810|chr13:77098223-77098223|T/-|frameshift_variant;MYCBP2|p.M1002Nfs*3|1|0.3|ENSG00000005810|chr13:77212099-77212100|-/T|frameshift_variant	nc|ENSG00000005810|O75592-2|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.806884765625	3	506.662314	1516.96511	1.3411	0.00067949	3.2701	0.0016568	4.6112	0.0023363	506.6640037442328	109.28	0.57171	109.28	109.06	109.64	0					25	12	3	0	0	0	0.026488	1	12384	12384		10.104	8.5809	1	209210			26155	859	21389	21416	29331	29331					0.22731014281634998
KRRAKLLMK	9	Oxidation (M)	_KRRAKLLM(Oxidation (M))K_		KRRAKLLM(1)K		KRRAKLLM(66)K	0	0	1			REV__ENST00000421245.2_1_X:72755416-72755509:+|nuORF	REV__ENST00000421245.2_1_X:72755416-72755509:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	580.3751831054688	2	580.376435	1158.73832	-0.52632	-0.00030547	-2.4088	-0.001398	-2.9351	-0.0017035	580.3749027985505	43.051	0.89759	43.051	42.839	43.737	0					44	20	4	0	0	0	0.27546	1	2814	2814		65.803	10.299	1	1661100	+		26156	25601	21390	21417	29332	29332		575			0.1652971467849511
KRRDHVFFILK	11	Unmodified	_KRRDHVFFILK_					0	0	0			REV__ENSG00000164604|ENST00000424100|GPR85	REV__ENSG00000164604|ENST00000424100|GPR85	MULTI-MSMS	OvCa9_classI_Rep3	3	486.95867919921875	3	486.961256	1457.86194	-6.9542	-0.0033864	2.3403	0.0011397	-4.6139	-0.0022468	486.9622029105925	158.45	2.296	157.18	156.33	158.63	-1.267					151	56	3	0	0	0	0.7257	1	13686	13686		6.3209	0.6221	1	50747	+		26157	21001	21391	21418	29333	29333					0.1513208905043939
KRRERRPRERL	11	Unmodified	_KRRERRPRERL_					0	0	0			REV__ENST00000594295.5_1_19:52580327-52588101:-|nuORF	REV__ENST00000594295.5_1_19:52580327-52588101:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	517.9849243164062	3	517.985346	1550.93421	1.3669	0.00070803	-2.7918	-0.0014461	-1.4249	-0.0007381	517.9835649013266	125.33	0.77364	125.33	125.17	125.95	0					25	18	2	0	0	0	0.72516	1	14488	14488		13.508	3.8618	1	146840	+		26158	27979	21392	21419	29334	29334					0.1807781617674209
KRREWLLRKSS	11	Unmodified	_KRREWLLRKSS_					0	0	0		ENST00000509976.1_1_5:41904493-41911314:+|nuORF;ENSG00000205765|ENST00000381647|RIMOC1	ENST00000509976.1_1_5:41904493-41911314:+|nuORF	ENST00000509976.1_1_5:41904493-41911314:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	486.9589538574219	3	486.959915	1457.85791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	162.24	1	160.62	160.12	161.12	-1.6239								0	0	0	0.19474	1	16037	16037		9.6461	1.2389	1				26159	9086	21393	21420	29335	29335					0.1472999955672094
KRRFFEYKRKY	11	Unmodified	_KRRFFEYKRKY_					0	0	0			REV__nc|ENSG00000069869|P46934-3|NEDD4	REV__nc|ENSG00000069869|P46934-3|NEDD4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	405.2392883300781	4	405.983493	1619.90486	0.89038	0.00036148	2.8601	0.0011612	3.7505	0.0015226	405.98508509482434	46.46	0.46758	43.388	43.136	43.604	-3.0724					10	8	2	0	0	0	0.026549	1	2428	2428		3.6191	2.2971	1	8759.4	+		26160	28729	21394	21421	29336	29336					0.11970859107873366
KRRHWRRTKL	10	Unmodified	_KRRHWRRTKL_					0	0	0		ENSG00000198918|ENST00000361575|RPL39;ENSG00000163923|ENST00000296277|RPL39L	ENSG00000198918|ENST00000361575|RPL39	ENSG00000198918|ENST00000361575|RPL39	MULTI-MSMS	OvCa99_classI_Rep5	1	479.6322326660156	3	479.632244	1435.8749	-0.20282	-9.7278E-05	-0.40601	-0.00019474	-0.60883	-0.00029202	479.6320653010283	29.762	1.3942	29.762	29.337	30.731	0					81	27	5	0	0	0	0.7855	1	1091	1091		20.837	11.191	1	598080			26161	6379	21395	21422	29337	29337					0.17439964953200615
KRRIKKLV	8	Unmodified	_KRRIKKLV_					0	0	0			REV__CREB3L3|p.S395Ffs*17|1|0.35|ENSG00000060566|chr19:4171767-4171767|C/-|frameshift_variant	REV__CREB3L3|p.S395Ffs*17|1|0.35|ENSG00000060566|chr19:4171767-4171767|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.3246459960938	2	520.874385	1039.73422	2.0133	0.0010487	3.1849	0.001659	5.1983	0.0027076	520.8758734565439	98.832	1.1909	98.832	98.461	99.652	0					61	28	3	0	0	0	0.028476	1	10978	10978		25.45	7.1258	1	701720	+		26162	16240	21396	21423	29338	29338					0.2159399324707465
KRRKAHLRRLD	11	Unmodified	_KRRKAHLRRLD_					0	0	0		ENSG00000107957|ENST00000369774|SH3PXD2A	ENSG00000107957|ENST00000369774|SH3PXD2A	ENSG00000107957|ENST00000369774|SH3PXD2A	MULTI-MSMS	OvCa9_classI_Rep4_	4	483.6349792480469	3	483.639287	1447.89603	-6.2422	-0.003019	-3.5304	-0.0017074	-9.7726	-0.0047264	483.63750108223127	159.48	3.4267	157.89	156.66	160.09	-1.5894					215	86	4	0	0	0	0.72579	1	15852	15852		5.1424	1.7337	1	104790			26163	2631	21397	21424	29339	29339					0.18999930262043563
KRRLEWENWEY	11	Unmodified	_KRRLEWENWEY_					0	0	0			REV__ENST00000489338.6_1_6:88125312-88173965:+|nuORF	REV__ENST00000489338.6_1_6:88125312-88173965:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.7803955078125	3	536.935435	1607.78447	-0.35231	-0.00018917	-3.4709	-0.0018636	-3.8232	-0.0020528	537.2681675516076	41.323	0.53596	41.323	40.969	41.505	0					14	11	2	0	0	0	0.026383	1	2580	2580		5.4129	0	1	37327	+		26164	23614	21398	21425	29340	29340					0.004894063236179136
KRRLVVQTS	9	Unmodified	_KRRLVVQTS_					0	0	0			REV__SNRK|p.T715Lfs*6|1|0.32|ENSG00000163788|chr3:43348400-43348403|CCAC/-|frameshift_variant	REV__SNRK|p.T715Lfs*6|1|0.32|ENSG00000163788|chr3:43348400-43348403|CCAC/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	543.8400268554688	2	543.840739	1085.66693	1.5392	0.00083707	-1.7767	-0.00096622	-0.23749	-0.00012915	543.8395786919444	28.227	0.75276	25.518	25.344	26.096	-2.7097					24	15	2	0	0	0	0.69123	1	585	585		20.947	2.6225	1	48605	+		26165	20886	21399	21426	29341	29341					0.1275191824547619
KRRMVTRRRRR	11	Unmodified	_KRRMVTRRRRR_					0	0	0		HSP90AA1|p.E244Kfs*72|1|0.42|ENSG00000080824|chr14:102084929-102084932|TTTC/-|frameshift_variant	HSP90AA1|p.E244Kfs*72|1|0.42|ENSG00000080824|chr14:102084929-102084932|TTTC/-|frameshift_variant	HSP90AA1|p.E244Kfs*72|1|0.42|ENSG00000080824|chr14:102084929-102084932|TTTC/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2689819335938	3	524.33057	1569.96988	-0.54004	-0.00028316	-0.25919	-0.0001359	-0.79923	-0.00041906	524.3301864584716	30.161	0.39757	30.161	29.986	30.383	0					12	7	2	0	0	0	0.026534	1	1121	1121		6.001	4.6791	1	29904			26166	14490	21400	21427	29342	29342					0.20769575152712605
KRRPKPTER	9	Unmodified	_KRRPKPTER_					0	0	0			REV__nc|ENSG00000186660|Q96JP5-2|ZFP91	REV__nc|ENSG00000186660|Q96JP5-2|ZFP91	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3560180664062	2	584.357088	1166.69962	-2.312	-0.0013511	1.1487	0.00067126	-1.1633	-0.0006798	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.67509	1	14632	14632		23.042	0	1	180810	+		26167	22607	21401	21428	29343	29343					0.122941253683166
KRRQEERLR	9	Unmodified	_KRRQEERLR_					0	0	0		nc|ENSG00000131188|Q8TB68-2|PRR7;ENSG00000131188|ENST00000323249|PRR7;chr5:177446960-177454829|427|73.44|0.86|6.42|+|ENST00000502922|PRR7,PRR7	nc|ENSG00000131188|Q8TB68-2|PRR7	nc|ENSG00000131188|Q8TB68-2|PRR7	MULTI-MSMS	OvCa99_classI_Rep5	1	635.876220703125	2	635.876176	1269.7378	0.20421	0.00012986	-0.21252	-0.00013514	-0.0083054	-5.2812E-06	635.8759168275292	22.506	0.41327	22.506	22.333	22.746	0					17	8	3	0	0	0	0.40818	1	218	218		51.193	0	1	94726			26168	499	21402	21429	29344	29344					0.11372011282969652
KRRRDSPSHL	10	Unmodified	_KRRRDSPSHL_					0	0	0		ENSG00000139767|ENST00000267260|SRRM4	ENSG00000139767|ENST00000267260|SRRM4	ENSG00000139767|ENST00000267260|SRRM4	MULTI-MSMS	OvCa99_classI_Rep5	1	626.353759765625	2	626.355077	1250.6956	-0.095981	-6.0118E-05	0.22046	0.00013809	0.12448	7.7969E-05	626.3551023273419	22.409	0.3895	22.409	22.228	22.617	0					17	8	3	0	0	0	0.69928	1	209	209		32.812	7.2384	1	86141			26169	4804	21403	21430	29345	29345					0.08028035874599482
KRRRKEQRWDQ	11	Unmodified	_KRRRKEQRWDQ_					0	0	0		ENST00000574201.1_1_17:7217587-7218431:-|nuORF	ENST00000574201.1_1_17:7217587-7218431:-|nuORF	ENST00000574201.1_1_17:7217587-7218431:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.2966918945312	3	529.297589	1584.87094	-0.92121	-0.0004876	-0.42601	-0.00022549	-1.3472	-0.00071308	529.2973943446033	21.891	1.5143	20.552	20.27	21.785	-1.3386					128	35	6	0	0	0	0.72548	1	234	234		9.2118	5.8031	1	1347900			26170	13929	21404	21431	29346	29346					0.10189830668832656
KRRRRRKPKQK	11	Unmodified	_KRRRRRKPKQK_					0	0	0		ENSG00000132793|ENST00000373257|LPIN3;nc|ENSG00000132793|Q9BQK8-2|LPIN3	ENSG00000132793|ENST00000373257|LPIN3	ENSG00000132793|ENST00000373257|LPIN3	MSMS	OvCa99_classI_Rep5	1	513.0083618164062	3	513.009714	1536.00731	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.389	1	20.389	19.889	20.889	0								0	0	0	0.19474	1	25	25		1.523	0.10423	1				26171	4174	21405	21432	29347	29347					0.2607498969000517
KRRRRRRRWQW	11	Unmodified	_KRRRRRRRWQW_					0	0	0		ENST00000487093.5_1_3:51575631-51661706:+|nuORF	ENST00000487093.5_1_3:51575631-51661706:+|nuORF	ENST00000487093.5_1_3:51575631-51661706:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	436.21435546875	4	435.764904	1739.03051	-0.015738	-6.8582E-06	2.5464	0.0011096	2.5307	0.0011028	435.76593791918447	33.98	1.1027	33.98	33.483	34.586	0					52	22	5	0	0	0	0.02656	1	1597	1597		0.3405	0	1	134670			26172	12635	21406	21433	29348	29348					0.19055428527326512
KRRRRRRRWQW	11	Unmodified	_KRRRRRRRWQW_					0	0	0		ENST00000487093.5_1_3:51575631-51661706:+|nuORF	ENST00000487093.5_1_3:51575631-51661706:+|nuORF	ENST00000487093.5_1_3:51575631-51661706:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.8197631835938	3	580.684113	1739.03051	-1.1395	-0.0006617	2.9444	0.0017097	1.8048	0.001048	581.3545159625129	33.993	0.43225	33.993	33.824	34.257	0					16	8	3	0	0	0	0.02656	1	1618	1618		1.3219	0	1	31601			26173	12635	21406	21433	29349	29349					0.19055428527326512
KRRRTCLVHL	10	Unmodified	_KRRRTCLVHL_					0	0	0			REV__IL1B|p.L145Tfs*15|1|0.06|ENSG00000125538|chr2:112832668-112832696|GCTCCATATCCTGTCCCTGGAGGTGGAGA/-|frameshift_variant	REV__IL1B|p.L145Tfs*15|1|0.06|ENSG00000125538|chr2:112832668-112832696|GCTCCATATCCTGTCCCTGGAGGTGGAGA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	641.3853759765625	2	641.387865	1280.76118	-6.9547	-0.0044607	2.1891	0.0014041	-4.7656	-0.0030566	641.3889588117827	161.52	1.4957	160.15	159.74	161.23	-1.3692					63	30	3	0	0	0	0.81992	1	14034	14034		16.473	0	1	83087	+		26174	28301	21407	21434	29350	29350					0.13202733795947097
KRRSTRQN	8	Unmodified	_KRRSTRQN_					0	0	0			REV__ENSG00000132740|ENST00000255078|IGHMBP2	REV__ENSG00000132740|ENST00000255078|IGHMBP2	MULTI-MSMS	OvCa9_classI_Rep2	2	523.304443359375	2	523.302313	1044.59007	-0.69596	-0.0003642	3.1142	0.0016297	2.4183	0.0012655	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.74754	1	13726	13726		27.882	1.0861	1	130240	+		26175	19102	21408	21435	29351	29351					0.0695611974899748
KRRVKQLWGA	10	Unmodified	_KRRVKQLWGA_					0	0	0			REV__chr8:127733959-127738794|400|10.04|0.42|4.57|-|2|CASC11,CASC11|1	REV__chr8:127733959-127738794|400|10.04|0.42|4.57|-|2|CASC11,CASC11|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	621.3826293945312	2	621.383106	1240.75166	0.63091	0.00039204	-0.58959	-0.00036636	0.041318	2.5674E-05	621.3825974566482	32.776	1.7235	30.08	29.569	31.293	-2.6954					81	36	3	0	0	0	0.77834	1	838	838		16.473	0	1	73112	+		26176	16107	21409	21436	29352	29352					0.1409128878208321
KRRWLLFHRWR	11	Unmodified	_KRRWLLFHRWR_					0	0	0		ENST00000603928.2_2_9:136890984-136891107:+|nuORF	ENST00000603928.2_2_9:136890984-136891107:+|nuORF	ENST00000603928.2_2_9:136890984-136891107:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.275634765625	3	551.995294	1652.96405	1.9384	0.00107	-1.8367	-0.0010138	0.10175	5.6167E-05	552.3282744573247	118	0.74055	118	117.74	118.49	0					18	15	2	0	0	0	0.026551	1	13558	13558		1.4188	0.096825	1	57796			26177	14260	21410	21437	29353	29353					0.16368799912697796
KRRWRRGY	8	Unmodified	_KRRWRRGY_					0	0	0			REV__nc|ENSG00000250423|Q9ULL0|KIAA1210	REV__nc|ENSG00000250423|Q9ULL0|KIAA1210	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3418579101562	2	589.344315	1176.67408	-4.3129	-0.0025418	1.8746	0.0011048	-2.4383	-0.001437	589.3453728975387	144.79	3.9151	143.81	141.71	145.63	-0.97299					242	78	5	0	0	0	0.74971	1	12140	12140		26.796	4.8362	1	192050	+		26178	23494	21411	21438	29354	29354					0.09280695636562086
KRRWWKFYDKK	11	Unmodified	_KRRWWKFYDKK_					0	0	0		tr|A0A553SRX5|A0A553SRX5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02025PE=4SV=1	tr|A0A553SRX5|A0A553SRX5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02025PE=4SV=1	tr|A0A553SRX5|A0A553SRX5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02025PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	547.6431884765625	3	547.643927	1639.90995	-0.24629	-0.00013488	-0.78757	-0.00043131	-1.0339	-0.00056619	547.6435846512553	22.506	0.45595	22.506	22.333	22.789	0					13	9	2	0	0	0	0.72582	1	220	220		0.37141	0.03091	1	88548			26179	34308	21412	21439	29355	29355					0.1155916297047952
KRSAALTAR	9	Unmodified	_KRSAALTAR_					0	0	0			REV__ENST00000449592.6_1_12:122217458-122217530:+|nuORF	REV__ENST00000449592.6_1_12:122217458-122217530:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.298583984375	2	487.298707	972.582862	-1.2796	-0.00062354	0.94841	0.00046216	-0.33118	-0.00016138	487.29906414689214	146.58	1.2256	145.15	144.7	145.92	-1.4357					56	23	3	0	0	0	0.69123	1	14419	14419		20.947	2.6225	1	319100	+		26180	25949	21413	21440	29356	29356					0.0954738714854102
KRSATRRTN	9	Unmodified	_KRSATRRTN_					0	0	0			REV__ENST00000590503.5_1_19:37710520-37721347:+|nuORF	REV__ENST00000590503.5_1_19:37710520-37721347:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3157348632812	2	545.31542	1088.61629	-1.9768	-0.001078	4.1805	0.0022797	2.2037	0.0012017	545.3174971514211	139.12	3.9663	138.06	135.98	139.95	-1.0595					186	80	3	0	0	0	0.66262	1	11504	11504		24.519	1.4767	1	94142	+		26181	27918	21414	21441	29357	29357					0.07552388920453268
KRSEFGAPIK	10	Unmodified	_KRSEFGAPIK_					0	0	0		nc|ENSG00000162643|Q8IWG1-2|DNAI3;ENSG00000162643|ENST00000294664|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	MULTI-MSMS	OvCa99_classI_Rep5	1	566.8280639648438	2	566.827298	1131.64004	-0.23429	-0.0001328	-0.26288	-0.00014901	-0.49717	-0.00028181	566.8271171795466	38.728	1.0721	38.728	38.348	39.42	0					65	23	5	0	0	0	0.012025	2	2218	2218;2244		157.34	44.934	1	3351000			26182	6210	21415	21442	29358;29359	29358					0.07948809634262943
KRSKLLKQGD	10	Unmodified	_KRSKLLKQGD_					0	0	0		ENSG00000159915|ENST00000683810|ZNF233	ENSG00000159915|ENST00000683810|ZNF233	ENSG00000159915|ENST00000683810|ZNF233	MULTI-SECPEP	OvCa9_classI_Rep4_	4	587.3406982421875	2	586.859129	1171.70371	-0.25859	-0.00015176	-0.01094	-6.4199E-06	-0.26953	-0.00015818	586.8591540153602	38.899	0.89341	35.973	35.601	36.495	-2.9264					26	17	2	0	0	0	0.027056	1	1517	1517		27.882	5.3026	1	29153			26183	6033	21416	21443	29360	29360					0.12472170071396249
KRSLKNKIV	9	Unmodified	_KRSLKNKIV_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.361083984375	2	543.361308	1084.70806	-0.74826	-0.00040658	0.78081	0.00042426	0.032546	1.7684E-05	543.3616145864607	20.908	1.2121	19.569	19.311	20.523	-1.3386					60	24	3	0	0	0	0.59259	1	97	97		32.812	0	1	288780	+		26184	18516	21417	21444	29361	29361					0.16909679284913182
KRSPLDAIV	9	Unmodified	_KRSPLDAIV_					0	0	0		ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	MULTI-MSMS	OvCa9_classI_Rep2	2	499.8048400878906	2	499.803291	997.59203	-0.79283	-0.00039626	0.56419	0.00028199	-0.22863	-0.00011427	499.803503863494	58.325	1.5782	55.54	55.08	56.658	-2.7844					54	30	2	0	0	0	0.35444	1	4183	4183		56.721	3.7844	1	917370			26185	1668	21418	21445	29362	29362					0.09313735714215454
KRSTRREGK	9	Unmodified	_KRSTRREGK_					0	0	0		ENSG00000149260|ENST00000648180|CAPN5	ENSG00000149260|ENST00000648180|CAPN5	ENSG00000149260|ENST00000648180|CAPN5	MULTI-MSMS	OvCa9_classI_Rep2	2	559.3345336914062	2	559.33107	1116.64759	0.022736	1.2717E-05	4.3372	0.0024259	4.3599	0.0024386	559.3338875168262	104.92	4.6529	104.34	102.39	107.04	-0.57639					237	93	5	0	0	0	0.42676	1	9793	9793		49.442	1.7842	1	7580000			26186	5449	21419	21446	29363	29363					0.09392961954563361
KRSTVSTGPL	10	Unmodified	_KRSTVSTGPL_					0	0	0			REV__ENST00000601033.1_1_19:46531262-46531590:+|nuORF	REV__ENST00000601033.1_1_19:46531262-46531590:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	523.3026733398438	2	523.303655	1044.59276	-1.2004	-0.00062819	0.32413	0.00016962	-0.87631	-0.00045857	523.3038645088309	26.368	1.4	26.368	26.142	27.542	0					63	27	4	0	0	0	0.58067	1	724	724		44.377	11.565	1	3642300	+		26187	28034	21420	21447	29364	29364					0.07224530363282611
KRSVKSTRR	9	Unmodified	_KRSVKSTRR_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-7|BLTP1;REV__nc|ENSG00000138688|Q2LD37-6|BLTP1	REV__nc|ENSG00000138688|Q2LD37-6|BLTP1	MULTI-SECPEP	OvCa9_classI_Rep3	3	559.33544921875	2	559.349263	1116.68397	0.047941	2.6816E-05	2.1637	0.0012103	2.2116	0.0012371	559.3501046532595	105.73	0.41492	104.38	104.15	104.56	-1.3482					10	7	2	0	0	0	0.027353	1	7410	7410		93.195	0	1	71509	+		26188	19560;28886	21421	21448	29365	29365					0.130298388512756
KRSWIIMF	8	Unmodified	_KRSWIIMF_					0	0	0		tr|A0A553SIN4|A0A553SIN4_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_15220PE=4SV=1	tr|A0A553SIN4|A0A553SIN4_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_15220PE=4SV=1	tr|A0A553SIN4|A0A553SIN4_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_15220PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	540.8047485351562	2	540.80478	1079.59501	-2.4915	-0.0013474	2.8073	0.0015182	0.31571	0.00017074	540.8058905637274	34.869	1.1922	32.159	31.91	33.102	-2.7097					80	23	5	0	0	0	0.75241	1	1356	1356		25.45	3.4903	1	239100			26189	33401	21422	21449	29366	29366					0.05839287567391693
KRTFPEMQF	9	Unmodified	_KRTFPEMQF_					0	0	0		nc|ENSG00000131374|Q92609|TBC1D5;ENSG00000131374|ENST00000696125|TBC1D5	nc|ENSG00000131374|Q92609|TBC1D5	nc|ENSG00000131374|Q92609|TBC1D5	MULTI-MSMS	OvCa9_classI_Rep4_	4	592.3027954101562	2	592.300059	1182.58556	-0.73573	-0.00043577	3.65	0.0021619	2.9143	0.0017262	592.3020126327639	54.508	0.97409	51.261	50.979	51.953	-3.2474					56	18	5	0	0	0	0.46356	1	3401	3401		45.972	0.020292	1	443840			26190	4058	21423	21450	29367	29367					0.0015747449119771773
KRTHKQMEEHS	11	Unmodified	_KRTHKQMEEHS_					0	0	0		L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|93|2|sense	L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|93|2|sense	L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|93|2|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.73114013671875	3	470.901737	1409.68338	-0.34874	-0.00016422	-3.6566	-0.0017219	-4.0053	-0.0018861	471.23425169198634	55.46	0.45753	52.165	51.803	52.26	-3.2944					10	8	2	0	0	0	0.026113	1	3463	3463		30.569	4.5055	1	20232			26191	14715	21424	21451	29368	29368					-0.005073686507103048
KRTHKQMEEHS	11	Unmodified	_KRTHKQMEEHS_					0	0	0		L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|93|2|sense	L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|93|2|sense	L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|93|2|sense	MULTI-MATCH	OvCa9_classI_Rep2	2		3	470.901737	1409.68338	-1.1503	-0.00054166	-3.6547	-0.001721	-4.805	-0.0022627	470.90003041847467	54.798	0.45048	51.985	51.822	52.272	-2.8139	-0.09038	5.9655E-07	NaN	24.232	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13590			26192	14715	21424	21451							-0.005073686507103048
KRTICLVVVC	10	Unmodified	_KRTICLVVVC_					0	0	0			REV__ENSG00000144339|ENST00000272771|TMEFF2	REV__ENSG00000144339|ENST00000272771|TMEFF2	MULTI-MSMS	OvCa9_classI_Rep3	3	567.33056640625	2	567.330304	1132.64606	-3.474	-0.0019709	2.5615	0.0014532	-0.91249	-0.00051769	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.73378	1	12350	12350		26.693	1.1189	1	458690	+		26193	19902	21425	21452	29369	29369					0.08503868549951221
KRTICLVVVC	10	Unmodified	_KRTICLVVVC_					0	0	0			REV__ENSG00000144339|ENST00000272771|TMEFF2	REV__ENSG00000144339|ENST00000272771|TMEFF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3300170898438	2	567.330304	1132.64606	-0.48412	-0.00027465	-0.32253	-0.00018298	-0.80665	-0.00045764	567.3299446868054	145.54	4.8872	144.11	142.68	147.57	-1.4357					247	95	4	0	0	0	0.69986	1	14452	14452		30.504	1.3541	1	208760	+		26194	19902	21425	21452	29370	29370					0.08503868549951221
KRTRLHISLN	10	Unmodified	_KRTRLHISLN_					0	0	0			REV__tr|A0A553SQD7|A0A553SQD7_NIACItRNA-dihydrouridinesynthaseOS=NialliacirculansOX=1397GN=CEQ21_24895PE=3SV=1	REV__tr|A0A553SQD7|A0A553SQD7_NIACItRNA-dihydrouridinesynthaseOS=NialliacirculansOX=1397GN=CEQ21_24895PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	619.3753051757812	2	619.37802	1236.74149	-5.5629	-0.0034455	4.1142	0.0025482	-1.4487	-0.00089731	619.3807056035699	161.45	0.43851	161.22	160.99	161.43	-0.22697					13	8	2	0	0	0	0.77039	1	16448	16448		22.58	3.4761	1	25208	+		26195	30626	21426	21453	29371	29371					0.13258681056868227
KRTTNEALL	9	Unmodified	_KRTTNEALL_					0	0	0			REV__ENST00000594688.1_1_19:42929068-42929311:+|nuORF	REV__ENST00000594688.1_1_19:42929068-42929311:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	523.30322265625	2	523.303655	1044.59276	-2.1228	-0.0011108	2.0352	0.001065	-0.087543	-4.5811E-05	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.50149	1	11388	11388		42.396	9.5837	1	183010	+		26196	27968	21427	21454	29372	29372					0.07224530363282611
KRVIFPRFYFL	11	Unmodified	_KRVIFPRFYFL_					0	0	0		ENSG00000115423|ENST00000389394|DNAH6;nc|ENSG00000115423|Q9C0G6-4|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	MULTI-MSMS	OvCa9_classI_Rep3	3	495.9575500488281	3	495.962485	1484.86563	-6.9468	-0.0034453	-0.64572	-0.00032025	-7.5925	-0.0037656	495.96210445138047	163.05	2.2058	161.66	160.17	162.38	-1.3926					163	48	5	0	0	0	0.72538	1	14242	14242		10.587	1.375	1	227040			26197	3097	21428	21455	29373	29373					0.14258758824325923
KRVKSKPANPN	11	Unmodified	_KRVKSKPANPN_					0	0	0			REV__nc|ENSG00000189007|Q7Z6V5-2|ADAT2	REV__nc|ENSG00000189007|Q7Z6V5-2|ADAT2	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.867919921875	2	619.870028	1237.7255	-1.8762	-0.001163	0.9332	0.00057847	-0.94295	-0.00058451	619.8704234308321	147.79	3.8764	146.35	144.25	148.12	-1.4351					189	77	4	0	0	0	0.67712	2	14547	14535;14547		37.508	5.9784	1	269210	+		26198	22754	21429	21456	29374;29375	29375					0.11614974819940471
KRVQSGLLF	9	Unmodified	_KRVQSGLLF_					0	0	0			REV__ENST00000335255.9_2_17:80561515-80561617:+|nuORF	REV__ENST00000335255.9_2_17:80561515-80561617:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	524.315185546875	2	524.319109	1046.62366	-0.76442	-0.0004008	-0.11055	-5.7962E-05	-0.87497	-0.00045876	524.3190862553206	40.456	1.305	40.456	40.2	41.505	0					93	28	7	0	0	0	0.51865	1	2477	2477		40.778	0	1	5753900	+		26199	24576	21430	21457	29376	29376					0.10221728468172842
KRVSIAAASA	10	Unmodified	_KRVSIAAASA_					0	0	0			REV__tr|A0A7D6ZP98|A0A7D6ZP98_9CLOTM23familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19460PE=4SV=1	REV__tr|A0A7D6ZP98|A0A7D6ZP98_9CLOTM23familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19460PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	487.29290771484375	2	487.293091	972.571629	-1.5876	-0.0007736	1.367	0.00066614	-0.22054	-0.00010747	487.2937066188987	143.42	1.0862	143.19	142.8	143.89	-0.22696					37	21	2	0	0	0	0.79213	1	14412	14412		19.997	0.6368	1	43295	+		26200	32131	21431	21458	29377	29377					0.08424565054417599
KRWTLIGLV	9	Unmodified	_KRWTLIGLV_					0	0	0			REV__ENST00000380152.7_1_13:32929245-32929386:+|nuORF	REV__ENST00000380152.7_1_13:32929245-32929386:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.3077392578125	2	543.345126	1084.6757	-0.8695	-0.00047244	-0.89491	-0.00048625	-1.7644	-0.00095868	543.3444135573533	56.228	1.2646	52.933	52.16	53.425	-3.2944					38	24	2	0	0	0	0.027462	1	3629	3629		37.159	2.9866	1	36355	+		26201	25174	21432	21459	29378	29378					0.1367489188194213
KRWTLIGLV	9	Unmodified	_KRWTLIGLV_					0	0	0			REV__ENST00000380152.7_1_13:32929245-32929386:+|nuORF	REV__ENST00000380152.7_1_13:32929245-32929386:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	543.345126	1084.6757	-1.4186	-0.0007708	0.38326	0.00020824	-1.0354	-0.00056256	543.3448981588394	55.534	1.3431	52.73	51.932	53.275	-2.804	-0.10175	0.00051509	NaN	42.396	44	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30798	+		26202	25174	21432	21459							0.1367489188194213
KRYASSNIK	9	Unmodified	_KRYASSNIK_					0	0	0			REV__nc|ENSG00000042286|Q9BRQ8-2|AIFM2	REV__nc|ENSG00000042286|Q9BRQ8-2|AIFM2	MULTI-MSMS	OvCa9_classI_Rep2	2	533.7991333007812	2	533.803823	1065.59309	-1.2593	-0.00067223	1.1362	0.00060651	-0.12313	-6.5727E-05	533.8043186764647	45.985	1.0451	43.275	42.998	44.043	-2.7097					58	20	4	0	0	0	0.16562	1	2716	2716		82.241	4.9229	1	355770	+		26203	16637	21433	21460	29379	29379					0.06291950083118536
KRYDNITN	8	Unmodified	_KRYDNITN_					0	0	0			REV__tr|A0A7D6ZZ20|A0A7D6ZZ20_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18605PE=4SV=1	REV__tr|A0A7D6ZZ20|A0A7D6ZZ20_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18605PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	512.2661743164062	2	512.26453	1022.51451	-0.36663	-0.00018781	0.31998	0.00016391	-0.04666	-2.3902E-05	512.2645514121816	50.902	0.48045	50.902	50.64	51.12	0					28	10	4	0	0	0	0.58851	1	3896	3896		66.429	4.3219	1	1022400	+		26204	32396	21434	21461	29380	29380					0.004150977780227549
KRYILFCLVI	10	Unmodified	_KRYILFCLVI_					0	0	0		ENSG00000125910|ENST00000246115|S1PR4	ENSG00000125910|ENST00000246115|S1PR4	ENSG00000125910|ENST00000246115|S1PR4	MULTI-MSMS	OvCa9_classI_Rep2	2	634.374267578125	2	634.383394	1266.75224	-5.7659	-0.0036578	-2.6305	-0.0016687	-8.3963	-0.0053265	634.3814892688545	163.56	1.4089	163.33	162.75	164.16	-0.22696					114	47	3	0	0	0	0.81289	1	16711	16711		17.365	0.89182	1	320930			26205	3754	21435	21462	29381	29381					0.12952947386907
KRYILFCLVI	10	Unmodified	_KRYILFCLVI_					0	0	0		ENSG00000125910|ENST00000246115|S1PR4	ENSG00000125910|ENST00000246115|S1PR4	ENSG00000125910|ENST00000246115|S1PR4	MULTI-MSMS	OvCa9_classI_Rep3	3	634.3780517578125	2	634.383394	1266.75224	-6.5589	-0.0041609	-3.0428	-0.0019303	-9.6017	-0.0060912	634.3812595385845	164.92	1.7179	163.51	162.81	164.52	-1.4083					155	61	3	0	0	0	0.7759	1	14402	14402		21.96	2.8564	1	179530			26206	3754	21435	21462	29382	29382					0.12952947386907
KRYKEAQKI	9	Unmodified	_KRYKEAQKI_					0	0	0		nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENSG00000108344|ENST00000264639|PSMD3;ENST00000580980.1_1_17:38142938-38146259:+|nuORF	nc|ENSG00000108344|O43242-2|PSMD3	nc|ENSG00000108344|O43242-2|PSMD3	MULTI-MSMS	OvCa99_classI_Rep5	1	582.3486328125	2	582.348397	1162.68224	-1.1785	-0.00068628	0.73764	0.00042956	-0.44082	-0.00025671	582.3488787987717	26.667	0.94838	26.667	26.442	27.39	0					55	18	4	0	0	0	0.13504	1	706	706		87.696	20.203	1	3024500			26207	2646	21436	21463	29383	29383					0.10740785042662537
KRYKSIVKY	9	Unmodified	_KRYKSIVKY_					0	0	0		ENSG00000160752|ENST00000368356|FDPS;nc|ENSG00000160752|P14324-2|FDPS	ENSG00000160752|ENST00000368356|FDPS	ENSG00000160752|ENST00000368356|FDPS	MULTI-MSMS	OvCa99_classI_Rep5	1	592.8611450195312	2	592.861141	1183.70773	-1.0436	-0.00061873	0.63611	0.00037713	-0.40752	-0.0002416	592.8614945782524	34.609	0.98764	34.609	34.351	35.339	0					58	20	5	0	0	0	0.16524	1	1678	1678		82.305	31.112	1	2553700			26208	6086	21437	21464	29384	29384					0.12322259565098648
KRYKSIVKY	9	Unmodified	_KRYKSIVKY_					0	0	0		ENSG00000160752|ENST00000368356|FDPS;nc|ENSG00000160752|P14324-2|FDPS	ENSG00000160752|ENST00000368356|FDPS	ENSG00000160752|ENST00000368356|FDPS	MULTI-MATCH	OvCa9_classI_Rep2	2		2	592.861141	1183.70773	-2.5297	-0.0014998	-0.82749	-0.00049059	-3.3572	-0.0019903	592.8606505310291	37.564	0.53953	34.854	34.731	35.271	-2.7097	0.10945	-0.00042798	NaN	82.305	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18145			26209	6086	21437	21464							0.12322259565098648
KRYKSIVKY	9	Unmodified	_KRYKSIVKY_					0	0	0		ENSG00000160752|ENST00000368356|FDPS;nc|ENSG00000160752|P14324-2|FDPS	ENSG00000160752|ENST00000368356|FDPS	ENSG00000160752|ENST00000368356|FDPS	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	592.861141	1183.70773	0.98425	0.00058352	-4.8003	-0.0028459	-3.816	-0.0022624	592.8581668956034	37.664	0.94524	34.771	34.541	35.487	-2.8925	0.026358	-0.0051386	NaN	82.305	46	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89741			26210	6086	21437	21464							0.12322259565098648
KRYLSVNSF	9	Unmodified	_KRYLSVNSF_					0	0	0			REV__ENST00000462266.1_1_17:73316451-73322393:-|nuORF	REV__ENST00000462266.1_1_17:73316451-73322393:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	557.3042602539062	2	557.306198	1112.59784	0.76161	0.00042445	-1.1921	-0.00066436	-0.43049	-0.00023991	557.305338519675	79.155	2.3119	77.415	76.512	78.824	-1.7398					80	45	2	0	0	0	0.3249	1	6616	6616		60.118	0.18749	1	417440	+		26211	26111	21438	21465	29385	29385					0.04604834225892773
KRYTLRKVM	9	Unmodified	_KRYTLRKVM_					0	0	0		ENSG00000134278|ENST00000409402|SPIRE1;nc|ENSG00000134278|Q08AE8-4|SPIRE1;nc|ENSG00000134278|Q08AE8-3|SPIRE1;nc|ENSG00000134278|Q08AE8-5|SPIRE1;nc|ENSG00000134278|Q08AE8-2|SPIRE1	ENSG00000134278|ENST00000409402|SPIRE1	ENSG00000134278|ENST00000409402|SPIRE1	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8558959960938	2	597.860618	1193.70668	-3.1765	-0.0018991	-3.8999	-0.0023316	-7.0765	-0.0042307	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.67509	1	14795	14795		23.042	2.0956	1	436470			26212	4276	21439	21466	29386	29386					0.11757721924504949
KRYVELTDLE	10	Unmodified	_KRYVELTDLE_					0	0	0		ENST00000515762.5_1_5:10442078-10461472:+|nuORF;ENSG00000145491|ENST00000274134|ROPN1L;ENST00000510520.5_1_5:10442060-10472024:+|nuORF	ENST00000515762.5_1_5:10442078-10461472:+|nuORF	ENST00000515762.5_1_5:10442078-10461472:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	633.3665771484375	2	633.340435	1264.66632	-3.9298	-0.0024889	0.64272	0.00040706	-3.287	-0.0020818	633.8424142050795	150.23	1.777	150	148.97	150.75	-0.22697					79	35	3	0	0	0	0.027187	1	15238	15238		26.693	7.5894	1	41850			26213	5227	21440	21467	29387	29387					0.044570340150812626
KRYVKMVNL	9	Unmodified	_KRYVKMVNL_					0	0	0			REV__L1ME3D_dup2897|chr11:77321448-77321863:+|1.1025883766517437|0.4690870771856612|1.23|429.0|9|2|sense	REV__L1ME3D_dup2897|chr11:77321448-77321863:+|1.1025883766517437|0.4690870771856612|1.23|429.0|9|2|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8432006835938	2	575.841894	1149.66923	-0.33973	-0.00019563	3.0801	0.0017736	2.7403	0.001578	575.8433458482052	142.38	3.7668	140.93	139.05	142.82	-1.4532					179	72	3	0	0	0	0.61208	1	13962	13962		30.504	4.9296	1	165140	+		26214	28440	21441	21468	29388	29388					0.10038630658937109
KSAELWLH	8	Unmodified	_KSAELWLH_					0	0	0			REV__ENST00000468415.6_1_3:58739536-58855213:-|nuORF	REV__ENST00000468415.6_1_3:58739536-58855213:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.2616882324219	2	492.269084	982.523616	-0.62654	-0.00030843	-1.3	-0.00063994	-1.9265	-0.00094836	492.2688916188425	41.702	0.31103	38.721	38.542	38.853	-2.9804					7	5	2	0	0	0	0.028476	1	1864	1864		8.8223	0	1	8880.2	+		26215	20873	21442	21469	29389	29389					0.03165491134382137
KSAQKVLIK	9	Unmodified	_KSAQKVLIK_					0	0	0		nc|ENSG00000179299|Q8NE18-2|NSUN7;ENSG00000179299|ENST00000381782|NSUN7;nc|ENSG00000179299|Q8NE18-3|NSUN7;ENST00000473399.5_1_4:40752710-40776973:+|nuORF	nc|ENSG00000179299|Q8NE18-2|NSUN7	nc|ENSG00000179299|Q8NE18-2|NSUN7	MULTI-MSMS	OvCa9_classI_Rep2	2	507.8387145996094	2	507.837134	1013.65972	1.5913	0.0008081	-1.9271	-0.00097867	-0.33587	-0.00017057	507.8360989059997	28.421	0.96409	25.712	25.443	26.407	-2.7097					44	20	3	0	0	0	0.69913	1	624	624		18.262	0.79408	1	67466			26216	7814	21443	21470	29390	29390					0.15343185645042468
KSASTLCLPS	10	Unmodified	_KSASTLCLPS_					0	0	0		ENSG00000131941|ENST00000254260|RHPN2;nc|ENSG00000131941|Q8IUC4-2|RHPN2;ENST00000592247.1_1_19:33470904-33481620:-|nuORF;nc|ENSG00000258628|A8MT19|RHPN2P1	ENSG00000131941|ENST00000254260|RHPN2;nc|ENSG00000258628|A8MT19|RHPN2P1	ENSG00000131941|ENST00000254260|RHPN2	MULTI-SECPEP	OvCa9_classI_Rep3	3	502.7802429199219	2	503.765517	1005.51648	-1.0808	-0.00054445	-1.7138	-0.00086337	-2.7946	-0.0014078	504.2673390400065	88.002	0.41215	85.871	85.545	85.957	-2.1309					11	7	2	0	0	0	0.026659	1	5333	5333		54.776	20.604	1	16818			26217	4099;15361	21444	21471	29391	29391					0.013943904716484212
KSAVEHAK	8	Unmodified	_KSAVEHAK_					0	0	0			REV__ENSG00000147459|ENST00000276440|DOCK5	REV__ENSG00000147459|ENST00000276440|DOCK5	MULTI-MSMS	OvCa99_classI_Rep5	1	435.245361328125	2	435.245609	868.476666	0.23553	0.00010251	-0.22563	-9.8206E-05	0.0098993	4.3086E-06	435.2454029154414	35.962	0.64393	35.962	35.707	36.351	0					31	13	3	0	0	0	0.52468	1	1855	1855		75.043	1.0686	1	1195900	+		26218	20067	21445	21472	29392	29392					0.037166315832337204
KSAVEHAK	8	Unmodified	_KSAVEHAK_					0	0	0			REV__ENSG00000147459|ENST00000276440|DOCK5	REV__ENSG00000147459|ENST00000276440|DOCK5	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	435.245609	868.476666	0.23553	0.00010251	-0.22563	-9.8206E-05	0.0098993	4.3086E-06	435.2454029154414	35.962	0.64393	35.962	35.707	36.351	0	0	0	NaN	75.043	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1195900	+		26219	20067	21445	21472							0.037166315832337204
KSAVRHQLVLD	11	Unmodified	_KSAVRHQLVLD_					0	0	0		nc|ENSG00000221949|Q8N7H1|LINC01465	nc|ENSG00000221949|Q8N7H1|LINC01465	nc|ENSG00000221949|Q8N7H1|LINC01465	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3700561523438	2	633.369861	1264.72517	-3.7282	-0.0023614	2.641	0.0016727	-1.0872	-0.00068862	633.3713996689777	148.4	0.94901	147.45	146.95	147.9	-0.9512					59	18	4	0	0	0	0.72497	1	12549	12549		16.007	1.8697	1	94692			26220	15320	21446	21473	29393	29393					0.1033955510006308
KSCAKWKL	8	Unmodified	_KSCAKWKL_					0	0	0			REV__ENSG00000218819|ENST00000405799|TDRD15	REV__ENSG00000218819|ENST00000405799|TDRD15	MULTI-MSMS	OvCa99_classI_Rep5	1	482.2765197753906	2	482.275855	962.537157	-0.90675	-0.00043731	2.1192	0.0010221	1.2125	0.00058475	482.27684440786703	36.596	0.71702	36.596	36.397	37.114	0					41	15	4	0	0	0	0.24597	1	1937	1937		116.9	7.4253	1	2865800	+		26221	23329	21447	21474	29394	29394					0.05439025641965145
KSCAKWKL	8	Unmodified	_KSCAKWKL_					0	0	0			REV__ENSG00000218819|ENST00000405799|TDRD15	REV__ENSG00000218819|ENST00000405799|TDRD15	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	482.275855	962.537157	-0.90675	-0.00043731	2.1192	0.0010221	1.2125	0.00058475	482.27684440786703	36.596	0.71702	36.596	36.397	37.114	0	0	0	NaN	116.9	41	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2865800	+		26222	23329	21447	21474							0.05439025641965145
KSDANKRVR	9	Unmodified	_KSDANKRVR_					0	0	0			REV__APC|p.S2449Yfs*25|1|0.1|ENSG00000134982|chr5:112842938-112842939|-/TACTTCAGAAACAATCCACTTTTCCCCAGTC|frameshift_variant	REV__APC|p.S2449Yfs*25|1|0.1|ENSG00000134982|chr5:112842938-112842939|-/TACTTCAGAAACAATCCACTTTTCCCCAGTC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.619384765625	2	537.312346	1072.61014	-0.18438	-9.9072E-05	2.2052	0.0011849	2.0209	0.0010858	537.3133642794659	60.37	0.73114	60.37	59.957	60.688	0					31	17	3	0	0	0	0.027462	1	5267	5267		2.5243	0	1	657090	+		26223	15647	21448	21475	29395	29395					0.07673870688950046
KSDKKPLH	8	Unmodified	_KSDKKPLH_					0	0	0			REV__ENSG00000145911|ENST00000274605|N4BP3	REV__ENSG00000145911|ENST00000274605|N4BP3	MULTI-MSMS	OvCa99_classI_Rep5	1	476.7819519042969	2	476.782359	951.550165	-0.051995	-2.479E-05	0.092661	4.4179E-05	0.040667	1.9389E-05	476.7822756524666	22.767	0.36621	22.767	22.574	22.94	0					15	8	3	0	0	0	0.71369	1	250	250		40.573	0	1	53422	+		26224	19990	21449	21476	29396	29396					0.07245180025711306
KSDKYSIR	8	Unmodified	_KSDKYSIR_					0	0	0			REV__tr|A0A7D6VRP8|A0A7D6VRP8_9CLOTTIMbarrelproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06515PE=4SV=1	REV__tr|A0A7D6VRP8|A0A7D6VRP8_9CLOTTIMbarrelproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06515PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	497.7875671386719	2	498.777274	995.539994	-1.8452	-0.00092035	2.8642	0.0014286	1.019	0.00050827	498.7784236475268	38.136	0.59383	35.427	35.222	35.816	-2.7097					19	11	2	0	0	0	0.028476	1	1765	1765		25.45	6.0902	1	24334	+		26225	31432	21450	21477	29397	29397					0.04204572300477594
KSDLVKLEKVK	11	Unmodified	_KSDLVKLEKVK_					0	0	0			REV__nc|ENSG00000131504|O60610-2|DIAPH1	REV__nc|ENSG00000131504|O60610-2|DIAPH1	MULTI-SECPEP	OvCa99_classI_Rep5	1	643.2999267578125	2	643.905745	1285.79694	2.6073	0.0016789	-3.2162	-0.0020709	-0.60888	-0.00039206	643.9034948032366	100.52	0.40726	100.52	100.36	100.77	0					13	9	2	0	0	0	0.025958	1	11158	11158		7.0187	0	1	318050	+		26226	19020	21451	21478	29398	29398					0.165470497339129
KSDLVKLEKVK	11	Unmodified	_KSDLVKLEKVK_					0	0	0			REV__nc|ENSG00000131504|O60610-2|DIAPH1	REV__nc|ENSG00000131504|O60610-2|DIAPH1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	643.905745	1285.79694	-1.9982	-0.0012867	-8.6609	-0.0055768	-10.659	-0.0068635	643.9013584770537	100.96	0.1488	100.2	100.07	100.22	-0.76401	-0.16409	-0.0034736	NaN	7.0187	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7629.8	+		26227	19020	21451	21478							0.165470497339129
KSEAESLK	8	Unmodified	_KSEAESLK_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5;ENST00000560075.1_1_15:52439654-52476873:-|nuORF	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MULTI-SECPEP	OvCa99_classI_Rep5	1	447.24102783203125	2	446.242732	890.470912	0.27151	0.00012116	-1.7857	-0.00079687	-1.5142	-0.00067572	446.2424353310657	55.469	0.28639	55.469	55.273	55.559	0					12	6	3	0	0	0	0.028476	1	4552	4552		47.657	0	1	160200			26228	1412	21452	21479	29399	29399					0.021294882809002047
KSEHSKSKYSE	11	Unmodified	_KSEHSKSKYSE_					0	0	0			REV__nc|ENSG00000164828|O94901-3|SUN1	REV__nc|ENSG00000164828|O94901-3|SUN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	436.764892578125	3	437.217608	1308.63099	0.39553	0.00017293	-3.008	-0.0013152	-2.6125	-0.0011422	437.21626503835176	54.913	0.348	54.913	54.675	55.023	0					12	7	2	0	0	0	0.025298	1	4435	4435		50.791	31.825	1	248520	+		26229	24629	21453	21480	29400	29400					-0.010976285127071606
KSEIQPTIVSL	11	Unmodified	_KSEIQPTIVSL_					0	0	0			REV__ENST00000260323.15_1_15:54557693-54586214:+|nuORF	REV__ENST00000260323.15_1_15:54557693-54586214:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	607.3121337890625	2	607.853178	1213.6918	0.99712	0.0006061	-0.84816	-0.00051556	0.14896	9.0547E-05	607.8519774782856	89.509	0.2494	86.934	86.801	87.05	-2.575					6	4	2	0	0	0	0.025912	1	7686	7686		16.717	0	1	16239	+		26230	23922	21454	21481	29401	29401					0.09350508537522728
KSEKIVSPL	9	Unmodified	_KSEKIVSPL_					0	0	0			REV__nc|ENSG00000133943|Q7Z3D6-4|DGLUCY	REV__nc|ENSG00000133943|Q7Z3D6-4|DGLUCY	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.7658996582031	2	500.8055	999.596446	1.7754	0.00088913	0.47239	0.00023658	2.2478	0.0011257	500.80541383742474	82.907	0.46816	82.907	82.652	83.12	0					14	10	2	0	0	0	0.027462	1	8581	8581		54.776	3.4409	1	503200	+		26231	28860	21455	21482	29402	29402					0.09663200137140393
KSENPELEIK	10	Unmodified	_KSENPELEIK_					0	0	0			REV__tr|A0A7D6VWB6|A0A7D6VWB6_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=bglXPE=3SV=1	REV__tr|A0A7D6VWB6|A0A7D6VWB6_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=bglXPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	593.8197631835938	2	593.819335	1185.62412	-0.30051	-0.00017845	0.10235	6.078E-05	-0.19815	-0.00011767	593.8193214479901	110.88	1.6772	110.74	110.29	111.96	-0.13961					90	33	4	0	0	0	0.50873	1	10440	10440		53.089	0.15226	1	215050	+		26232	31744	21456	21483	29403	29403					0.03873058606700397
KSETERKKP	9	Unmodified	_KSETERKKP_					0	0	0		ENST00000312438.7_1_11:67141097-67141175:-|nuORF	ENST00000312438.7_1_11:67141097-67141175:-|nuORF	ENST00000312438.7_1_11:67141097-67141175:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	552.2826538085938	2	551.814387	1101.61422	0.21534	0.00011883	1.8131	0.0010005	2.0285	0.0011193	552.3162400435561	110.81	0.56911	109.7	109.33	109.9	-1.1038					18	10	2	0	0	0	0.027462	1	8036	8036		23.523	0	1	15654			26233	10308	21457	21484	29404	29404					0.06747915391997594
KSETERKKP	9	Unmodified	_KSETERKKP_					0	0	0		ENST00000312438.7_1_11:67141097-67141175:-|nuORF	ENST00000312438.7_1_11:67141097-67141175:-|nuORF	ENST00000312438.7_1_11:67141097-67141175:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	551.814387	1101.61422	0.77323	0.00042668	2.2236	0.001227	2.9968	0.0016537	551.8157039419823	109.67	0.54516	109.5	109.31	109.86	-0.17237	-0.11888	0.00023557	NaN	42.864	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16116			26234	10308	21457	21484							0.06747915391997594
KSEVKHPK	8	Unmodified	_KSEVKHPK_					0	0	0			REV__MAP1B|p.P578H|2|0.14|ENSG00000131711|chr5:72195088-72195088|C/A|missense_variant	REV__MAP1B|p.P578H|2|0.14|ENSG00000131711|chr5:72195088-72195088|C/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.2924499511719	2	476.782359	951.550165	-0.36094	-0.00017209	2.8462	0.001357	2.4853	0.0011849	476.7847141236494	73.364	1.3607	70.964	70.534	71.895	-2.3999					45	25	3	0	0	0	0.028476	1	6075	6075		26.693	9.3279	1	28601	+		26235	28639	21458	21485	29405	29405					0.07245180025711306
KSEVKHPK	8	Unmodified	_KSEVKHPK_					0	0	0			REV__MAP1B|p.P578H|2|0.14|ENSG00000131711|chr5:72195088-72195088|C/A|missense_variant	REV__MAP1B|p.P578H|2|0.14|ENSG00000131711|chr5:72195088-72195088|C/A|missense_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	476.782359	951.550165	0.046127	2.1993E-05	-0.37875	-0.00018058	-0.33262	-0.00015859	476.78207679576565	74.492	0.67813	71.261	71	71.678	-3.2308	0.14874	-0.00029238	NaN	24.519	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83131	+		26236	28639	21458	21485							0.07245180025711306
KSFAVFRNE	9	Unmodified	_KSFAVFRNE_					0	0	0			REV__tr|A0A7D6VZ95|A0A7D6VZ95_9CLOTCapsidproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19250PE=4SV=1	REV__tr|A0A7D6VZ95|A0A7D6VZ95_9CLOTCapsidproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19250PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.8050537109375	2	549.290548	1096.56654	-0.34842	-0.00019138	0.061294	3.3668E-05	-0.28712	-0.00015771	549.2904129460412	42.992	0.51621	42.992	42.753	43.27	0					26	11	4	0	0	0	0.027462	1	2833	2833		31.53	8.0071	1	655400	+		26237	31834	21459	21486	29406	29406					0.022122611918121038
KSFEGLFYF	9	Unmodified	_KSFEGLFYF_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa9_classI_Rep4_	4	569.2828979492188	2	569.2844	1136.55425	3.5918	0.0020448	-3.7715	-0.002147	-0.17965	-0.00010227	569.2820671370904	134.05	1.1369	132.52	132.19	133.33	-1.5257					54	22	3	0	0	0	0.51865	1	12963	12963		40.778	4.3314	1	90201			26238	4906	21460	21487	29407	29407					-0.008567752712451693
KSFLKLVEIQ	10	Unmodified	_KSFLKLVEIQ_					0	0	0		tr|A0A7D7ADC5|A0A7D7ADC5_9CLOT1,4-dihydroxy-2-naphthoatepolyprenyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22445PE=4SV=1	tr|A0A7D7ADC5|A0A7D7ADC5_9CLOT1,4-dihydroxy-2-naphthoatepolyprenyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22445PE=4SV=1	tr|A0A7D7ADC5|A0A7D7ADC5_9CLOT1,4-dihydroxy-2-naphthoatepolyprenyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22445PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	403.2315979003906	3	402.24818	1203.72271	0.90754	0.00036505	-3.8867	-0.0015634	-2.9792	-0.0011984	402.24613278497526	35.284	0.8428	35.284	34.864	35.707	0					27	17	3	0	0	0	0.027115	1	1759	1759		18.531	0.69791	1	72740			26239	36239	21461	21488	29408	29408					0.1289970664242901
KSFLLMFR	8	Unmodified	_KSFLLMFR_					0	0	0			REV__nc|ENSG00000161791|Q8IVF7-2|FMNL3	REV__nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-MSMS	OvCa9_classI_Rep2	2	521.2996826171875	2	521.29933	1040.58411	-0.71732	-0.00037394	3.9303	0.0020488	3.213	0.0016749	521.3013451951931	49.755	2.2298	46.995	46.325	48.555	-2.7603					109	44	4	0	0	0	0.71267	1	3171	3171		40.778	0.20554	1	840970	+		26240	20707	21462	21489	29409	29409					0.0654388519310487
KSFRLNSH	8	Unmodified	_KSFRLNSH_					0	0	0		ENSG00000162714|ENST00000682384|ZNF496;nc|ENSG00000162714|Q96IT1-2|ZNF496	ENSG00000162714|ENST00000682384|ZNF496	ENSG00000162714|ENST00000682384|ZNF496	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.74041748046875	2	494.769783	987.525013	-0.96959	-0.00047972	-1.4128	-0.00069902	-2.3824	-0.0011787	494.7688533296382	37.321	0.46209	37.321	37.069	37.531	0					16	9	2	0	0	0	0.028476	1	2036	2036		18.324	0	1	61040			26241	6219	21463	21490	29410	29410					0.030751252231198123
KSFSQSSSLIR	11	Unmodified	_KSFSQSSSLIR_					0	0	0		ENSG00000180938|ENST00000319286|ZNF572	ENSG00000180938|ENST00000319286|ZNF572	ENSG00000180938|ENST00000319286|ZNF572	MULTI-MSMS	OvCa99_classI_Rep5	1	413.895263671875	3	413.894577	1238.6619	-0.10168	-4.2085E-05	0.54354	0.00022497	0.44186	0.00018288	413.89479072541457	36.554	1.5941	36.554	36.257	37.851	0					80	34	5	0	0	0	0.60035	1	1927	1927		44.639	1.7752	1	3553700			26242	7903	21464	21491	29411	29411					0.05211569592188425
KSFTPDHVV	9	Unmodified	_KSFTPDHVV_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.2726440429688	2	515.271824	1028.5291	0.10607	5.4653E-05	-0.43996	-0.0002267	-0.33389	-0.00017205	515.2713620045929	60.283	1.387	56.853	56.407	57.794	-3.43					52	27	3	0	0	0	0.35444	1	4067	4067		56.721	0	1	444840			26243	7686	21465	21492	29412	29412					0.015971699261854155
KSFVEILSEID	11	Unmodified	_KSFVEILSEID_					0	0	0			REV__tr|A0A7D6VNG0|A0A7D6VNG0_9CLOT1-deoxy-D-xylulose-5-phosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12740PE=3SV=1	REV__tr|A0A7D6VNG0|A0A7D6VNG0_9CLOT1-deoxy-D-xylulose-5-phosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12740PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	640.3410034179688	2	640.342643	1278.67073	-2.0951	-0.0013416	-0.23179	-0.00014843	-2.3269	-0.00149	640.3424545682959	51.93	1.532	49.117	48.7	50.232	-2.8129					86	30	4	0	0	0	0.6511	1	3436	3436		37.508	17.478	1	488120	+		26244	31179	21466	21493	29413	29413					0.04254498438012888
KSFVYLLNLV	10	Unmodified	_KSFVYLLNLV_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	OvCa99_classI_Rep5	1	599.3121337890625	2	598.357899	1194.70125	1.289	0.0007713	-2.5952	-0.0015528	-1.3061	-0.00078153	598.3560296467863	113.94	0.4995	113.94	113.74	114.24	0					13	10	2	0	0	0	0.02706	1	13012	13012		23.523	12.657	1	78772	+		26245	17152	21467	21494	29414	29414					0.11168321613695298
KSGDKALYG	9	Unmodified	_KSGDKALYG_					0	0	0			REV__ENST00000470945.1_1_2:179330657-179343310:-|nuORF	REV__ENST00000470945.1_1_2:179330657-179343310:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.21551513671875	2	469.750724	937.486896	-0.90822	-0.00042664	0.66623	0.00031296	-0.24199	-0.00011367	469.7508264218776	44.101	1.1844	44.101	43.521	44.706	0					47	26	2	0	0	0	0.027462	1	2966	2966		39.253	0	1	240560	+		26246	17035	21468	21495	29415	29415					0.01565194517809232
KSGGTALHV	9	Unmodified	_KSGGTALHV_					0	0	0		ENST00000551191.1_1_12:80222078-80226230:-|nuORF;nc|ENSG00000058272|O14974-5|PPP1R12A;nc|ENSG00000058272|O14974-4|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A;ENSG00000058272|ENST00000450142|PPP1R12A	ENST00000551191.1_1_12:80222078-80226230:-|nuORF;nc|ENSG00000058272|O14974-5|PPP1R12A	nc|ENSG00000058272|O14974-5|PPP1R12A	MULTI-MSMS	OvCa9_classI_Rep4_	4	435.2457275390625	2	435.245609	868.476666	-0.39612	-0.00017241	0.423	0.00018411	0.026888	1.1703E-05	435.24565436424297	41.289	1.0922	38.309	38.075	39.167	-2.9804					55	20	4	0	0	0	0.18193	1	1833	1833		79.451	8.1553	1	482080			26247	13596;1243	21469	21496	29416	29416					0.037166315832337204
KSGLIHVTI	9	Unmodified	_KSGLIHVTI_					0	0	0			REV__tr|A0A7D6VRY6|A0A7D6VRY6_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07490PE=4SV=1	REV__tr|A0A7D6VRY6|A0A7D6VRY6_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07490PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.7727355957031	2	484.300384	966.586216	-0.18427	-8.9244E-05	1.2602	0.00061033	1.076	0.00052108	484.3006824127293	67.566	0.82765	67.566	67.014	67.842	0					28	20	2	0	0	0	0.027462	1	6258	6258		18.262	0	1	435500	+		26248	31456	21470	21497	29417	29417					0.10158637202584941
KSGRRHPVR	9	Unmodified	_KSGRRHPVR_					0	0	0		ENST00000275517.7_2_11:64850985-64851446:-|nuORF	ENST00000275517.7_2_11:64850985-64851446:-|nuORF	ENST00000275517.7_2_11:64850985-64851446:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	546.8116455078125	2	546.828498	1091.64244	-0.74502	-0.0004074	1.7215	0.00094138	0.9765	0.00053398	546.8299841562485	78.527	0.40546	76.175	76.048	76.453	-2.3527					10	7	2	0	0	0	0.027433	1	4181	4181		64.207	0.901	1	15732			26249	10028	21471	21498	29418	29418					0.10028702882596008
KSGVLWLHK	9	Unmodified	_KSGVLWLHK_					0	0	0		tr|A0A553SSY0|A0A553SSY0_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_03825PE=3SV=1	tr|A0A553SSY0|A0A553SSY0_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_03825PE=3SV=1	tr|A0A553SSY0|A0A553SSY0_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_03825PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	533.3397827148438	2	534.321651	1066.62875	-5.4207	-0.0028964	3.8607	0.0020629	-1.5599	-0.00083351	534.3235224923812	157.15	0.99728	155.98	155.4	156.39	-1.1707					37	19	3	0	0	0	0.027462	1	13499	13499		32.812	7.2384	1	39055			26250	34433	21472	21499	29419	29419					0.09810032330778995
KSHLLKIR	8	Unmodified	_KSHLLKIR_					0	0	0			REV__tr|A0A553SIG3|A0A553SIG3_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14705PE=4SV=1	REV__tr|A0A553SIG3|A0A553SIG3_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14705PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	497.7864990234375	2	497.829643	993.644734	-0.026406	-1.3146E-05	-0.17357	-8.6407E-05	-0.19997	-9.9553E-05	497.829219765479	66.845	0.49615	64.184	63.95	64.446	-2.661					17	9	2	0	0	0	0.028476	1	5209	5209		35.618	18.253	1	31543	+		26251	29890	21473	21500	29420	29420					0.14765738567700737
KSHLVGRTLR	10	Unmodified	_KSHLVGRTLR_					0	0	0			REV__ENSG00000166428|ENST00000392593|PLD4	REV__ENSG00000166428|ENST00000392593|PLD4	MULTI-MSMS	OvCa9_classI_Rep2	2	583.8576049804688	2	583.859464	1165.70437	-4.2591	-0.0024867	3.3098	0.0019325	-0.94924	-0.00055422	583.8612282732444	154.9	1.2136	154.67	154.34	155.56	-0.22696					82	33	4	0	0	0	0.80581	1	15807	15807		18.262	1.5447	1	148650	+		26252	21191	21474	21501	29421	29421					0.1281500951106409
KSHQDYIPVL	10	Unmodified	_KSHQDYIPVL_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	MULTI-MSMS	OvCa9_classI_Rep4_	4	600.3231201171875	2	600.324588	1198.63462	-2.8982	-0.0017399	0.96892	0.00058166	-1.9293	-0.0011582	600.3250269871453	152.11	1.1286	150.68	150.36	151.49	-1.435					68	24	4	0	0	0	0.79213	1	15060	15060		19.997	0	1	134150			26253	7677	21475	21502	29422	29422					0.043250860517900946
KSIALHKKF	9	Unmodified	_KSIALHKKF_					0	0	0		tr|A0A553SJ77|A0A553SJ77_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_16260PE=4SV=1	tr|A0A553SJ77|A0A553SJ77_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_16260PE=4SV=1	tr|A0A553SJ77|A0A553SJ77_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_16260PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.272216796875	2	536.337301	1070.66005	2.731	0.0014648	2.5514	0.0013684	5.2824	0.0028332	536.3385414756754	87.889	1.005	87.889	87.463	88.467	0					39	23	2	0	0	0	0.027462	1	9407	9407		31.53	0	1	624940			26254	33472	21476	21503	29423	29423					0.12754605364875715
KSIARVLTV	9	Unmodified	_KSIARVLTV_					0	0	0		ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF	ENSG00000136942|ENST00000348462|RPL35	ENSG00000136942|ENST00000348462|RPL35	MULTI-MSMS	OvCa9_classI_Rep2	2	493.8214416503906	2	493.821484	985.628415	-0.43874	-0.00021666	0.86873	0.000429	0.42998	0.00021234	493.8217288949413	68.747	1.2464	66.126	65.869	67.115	-2.6203					62	24	3	0	0	0	0.23241	1	5431	5431		70.816	16.04	1	304150			26255	4541	21477	21504	29424	29424					0.13502612610932374
KSIARVLTV	9	Unmodified	_KSIARVLTV_					0	0	0		ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF	ENSG00000136942|ENST00000348462|RPL35	ENSG00000136942|ENST00000348462|RPL35	MULTI-MSMS	OvCa9_classI_Rep3	3	493.8217468261719	2	493.821484	985.628415	0.45674	0.00022555	-0.32961	-0.00016277	0.12713	6.2781E-05	493.8211719252292	68.951	1.3458	66.137	65.914	67.259	-2.8144					64	26	4	0	0	0	0.20111	4	3044	3032;3037;3044;3051		76.17	19.736	1	296900			26256	4541	21477	21504	29425;29426;29427;29428	29427					0.13502612610932374
KSIARVLTV	9	Unmodified	_KSIARVLTV_					0	0	0		ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF	ENSG00000136942|ENST00000348462|RPL35	ENSG00000136942|ENST00000348462|RPL35	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.8216552734375	2	493.821484	985.628415	-0.58492	-0.00028884	0.74474	0.00036777	0.15982	7.8924E-05	493.8216854197062	69.88	1.1691	66.398	66.105	67.275	-3.4812					57	23	3	0	0	0	0.17606	1	5255	5255		80.455	0.74203	1	376730			26257	4541	21477	21504	29429	29429					0.13502612610932374
KSIAYLLD	8	Unmodified	_KSIAYLLD_					0	0	0			REV__ENST00000487434.1_1_21:35885613-35893875:-|nuORF	REV__ENST00000487434.1_1_21:35885613-35893875:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	462.7615966796875	2	461.765843	921.517133	0.19695	9.0945E-05	1.2367	0.00057104	1.4336	0.00066199	461.76639212102634	79.435	0.47017	77.695	77.408	77.878	-1.7398					12	8	2	0	0	0	0.028476	1	6689	6689		15.642	0	1	7043	+		26258	20602	21478	21505	29430	29430					0.05323553182984142
KSIFVVKKDS	10	Unmodified	_KSIFVVKKDS_					0	0	0		tr|A0A553SPK8|A0A553SPK8_NIACIPhosphate/phosphite/phosphonateABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_26610PE=3SV=1	tr|A0A553SPK8|A0A553SPK8_NIACIPhosphate/phosphite/phosphonateABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_26610PE=3SV=1	tr|A0A553SPK8|A0A553SPK8_NIACIPhosphate/phosphite/phosphonateABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_26610PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8430786132812	2	575.845156	1149.67576	-2.8608	-0.0016474	-0.58729	-0.00033819	-3.4481	-0.0019856	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.74374	1	14679	14679		25.574	4.6271	1	356230			26259	34056	21479	21506	29431	29431					0.10690847091291289
KSIGRAPE	8	Unmodified	_KSIGRAPE_					0	0	0		nc|ENSG00000121807|P41597|CCR2	nc|ENSG00000121807|P41597|CCR2	nc|ENSG00000121807|P41597|CCR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	429.7561340332031	2	429.245609	856.476666	0.328	0.00014079	-0.54749	-0.00023501	-0.21949	-9.4216E-05	429.2455618518739	46.467	0.56524	46.467	46.154	46.719	0					20	12	2	0	0	0	0.028476	1	3240	3240		21.96	0	1	127260			26260	14989	21480	21507	29432	29432					0.04268631583215665
KSIIALPE	8	Unmodified	_KSIIALPE_					0	0	0			REV__tr|A0A553SFD4|A0A553SFD4_NIACIAdeninedeaminaseOS=NialliacirculansOX=1397GN=adePE=3SV=1	REV__tr|A0A553SFD4|A0A553SFD4_NIACIAdeninedeaminaseOS=NialliacirculansOX=1397GN=adePE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	435.245361328125	2	435.768386	869.522219	0.38577	0.00016811	-1.9048	-0.00083004	-1.519	-0.00066193	435.7673861440745	35.784	0.45829	35.784	35.661	36.119	0					14	9	2	0	0	0	0.028476	1	1855	1855		44.117	1.7207	1	180780	+		26261	29565	21481	21508	29433	29433					0.08223857045618388
KSIPRSSNLS	10	Unmodified	_KSIPRSSNLS_					0	0	0			REV__ENST00000515095.5_1_5:96228145-96238354:+|nuORF	REV__ENST00000515095.5_1_5:96228145-96238354:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	544.8097534179688	2	544.806562	1087.59857	-0.34732	-0.00018922	3.2478	0.0017694	2.9005	0.0015802	544.807894746868	78.293	2.6731	76.553	75.205	77.878	-1.7398					144	51	4	0	0	0	0.48398	1	6559	6559		56.434	3.4971	1	701020	+		26262	20973	21482	21509	29434	29434					0.05827628874953916
KSIRLPNKL	9	Unmodified	_KSIRLPNKL_					0	0	0			REV__tr|A0A7D6ZX76|A0A7D6ZX76_9CLOTDUF1963domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12120PE=4SV=1	REV__tr|A0A7D6ZX76|A0A7D6ZX76_9CLOTDUF1963domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12120PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.8480834960938	2	534.848033	1067.68151	-1.2647	-0.00067643	0.84691	0.00045297	-0.41781	-0.00022346	534.8484503258775	46.599	2.5564	43.526	43.083	45.64	-3.0724					115	49	3	0	0	0	0.28934	1	2452	2452		64.207	0	1	1089400	+		26263	32318	21483	21510	29435	29435					0.1503799039360274
KSIRSIPAYL	10	Unmodified	_KSIRSIPAYL_					0	0	0		ENSG00000164111|ENST00000296511|ANXA5;ENST00000506395.5_1_4:122589625-122599515:-|nuORF;ENST00000515717.1_1_4:122590675-122593697:-|nuORF	ENSG00000164111|ENST00000296511|ANXA5	ENSG00000164111|ENST00000296511|ANXA5	MULTI-MSMS	OvCa99_classI_Rep5	1	574.3458862304688	2	574.345323	1146.67609	1.8882	0.0010845	0.27673	0.00015894	2.1649	0.0012434	574.345381725549	78.285	0.65623	78.285	77.884	78.54	0					24	15	2	0	0	0	0.32926	1	7927	7927		77.318	8.4714	1	1647900			26264	6410	21484	21511	29436	29436					0.10862266811136578
KSISRFVF	8	Unmodified	_KSISRFVF_					0	0	0			REV__ENST00000495880.1_1_3:52084162-52084369:-|nuORF	REV__ENST00000495880.1_1_3:52084162-52084369:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.2848205566406	2	492.287277	982.560001	-2.2796	-0.0011222	-1.7094	-0.00084154	-3.989	-0.0019637	492.2864131588537	149.81	0.85445	148.38	148.07	148.93	-1.4344					41	16	4	0	0	0	0.7549	1	14787	14787		24.203	1.1603	1	96209	+		26265	26749	21485	21512	29437	29437					0.06802368031094375
KSITSLYAAKI	11	Unmodified	_KSITSLYAAKI_					0	0	0			REV__ENSG00000145777|ENST00000344895|TSLP	REV__ENSG00000145777|ENST00000344895|TSLP	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8556518554688	2	597.858264	1193.70197	-3.1766	-0.0018991	0.037639	2.2503E-05	-3.1389	-0.0018766	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.69099	1	15032	15032		32.751	4.669	1	436470	+		26266	19983	21486	21513	29438	29438					0.11287116262747077
KSIVAHVL	8	Unmodified	_KSIVAHVL_					0	0	0			REV__tr|A0A553SIA2|A0A553SIA2_NIACIYwpF-likeproteinOS=NialliacirculansOX=1397GN=CEQ21_14475PE=4SV=1	REV__tr|A0A553SIA2|A0A553SIA2_NIACIYwpF-likeproteinOS=NialliacirculansOX=1397GN=CEQ21_14475PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	433.7781677246094	2	433.776545	865.538538	0.32865	0.00014256	-0.098838	-4.2874E-05	0.22981	9.9687E-05	433.7764030288957	52.399	1.6913	52.399	52.083	53.774	0					64	38	2	0	0	0	0.73205	1	4115	4115		35.618	0	1	1907000	+		26267	29875	21487	21514	29439	29439					0.10038983002368695
KSIVKADISL	10	Unmodified	_KSIVKADISL_					0	0	0		tr|A0A7D6ZXT7|A0A7D6ZXT7_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_00400PE=4SV=1	tr|A0A7D6ZXT7|A0A7D6ZXT7_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_00400PE=4SV=1	tr|A0A7D6ZXT7|A0A7D6ZXT7_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_00400PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.785888671875	2	537.331882	1072.64921	1.428	0.00076731	1.2942	0.0006954	2.7222	0.0014627	537.8338654051938	124.88	0.41734	124.88	124.61	125.02	0					12	8	2	0	0	0	0.026522	1	14429	14429		32.751	0	1	46949			26268	35890	21488	21515	29440	29440					0.11579158199947415
KSIVKPQIY	9	Unmodified	_KSIVKPQIY_					0	0	0			REV__tr|A0A553SMI3|A0A553SMI3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_22595PE=4SV=1	REV__tr|A0A553SMI3|A0A553SMI3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_22595PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.785888671875	2	538.329142	1074.64373	1.45	0.00078056	-0.37038	-0.00019939	1.0796	0.00058117	538.3285241620977	124.94	0.23297	124.94	124.74	124.98	0					8	4	2	0	0	0	0.027426	1	14429	14429		47.657	12.505	1	44644	+		26269	30333	21489	21516	29441	29441					0.10939479408125408
KSIYAKVK	8	Unmodified	_KSIYAKVK_					0	0	0			REV__tr|A0A7D7A203|A0A7D7A203_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17680PE=4SV=1	REV__tr|A0A7D7A203|A0A7D7A203_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17680PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	468.79937744140625	2	468.797478	935.580402	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.71	1	119.71	119.21	120.21	0								0	0	0	0.30129	1	13744	13744		45.952	3.5558	1		+		26270	32516	21490	21517	29442	29442					0.11003538690886217
KSKAPRVN	8	Unmodified	_KSKAPRVN_					0	0	0			REV__nc|ENSG00000095627|Q9BXT4-2|TDRD1	REV__nc|ENSG00000095627|Q9BXT4-2|TDRD1	MULTI-MSMS	OvCa9_classI_Rep3	3	450.27447509765625	2	450.274701	898.534849	-3.7498	-0.0016884	3.5683	0.0016067	-0.18149	-8.172E-05	450.27623858459356	147.83	1.7988	146.88	146.5	148.3	-0.95119					100	35	5	0	0	0	0.745	1	12462	12462		29.15	0.89528	1	751980	+		26271	17294	21491	21518	29443	29443					0.08152313228515595
KSKAPRVN	8	Unmodified	_KSKAPRVN_					0	0	0			REV__nc|ENSG00000095627|Q9BXT4-2|TDRD1	REV__nc|ENSG00000095627|Q9BXT4-2|TDRD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.2718811035156	2	450.274701	898.534849	-1.3926	-0.00062703	1.3713	0.00061744	-0.0213	-9.5907E-06	450.2752805302911	148.27	1.3965	146.84	146.48	147.87	-1.435					87	28	5	0	0	0	0.75241	1	14682	14682		25.45	3.7478	1	541000	+		26272	17294	21491	21518	29444	29444					0.08152313228515595
KSKELGGLII	10	Unmodified	_KSKELGGLII_					0	0	0		ENST00000479950.5_1_6:41034807-41034939:-|nuORF	ENST00000479950.5_1_6:41034807-41034939:-|nuORF	ENST00000479950.5_1_6:41034807-41034939:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	529.3338012695312	2	529.334424	1056.6543	1.2484	0.0006608	-0.61448	-0.00032526	0.63388	0.00033554	529.3335476420067	123.24	1.3997	122.2	121.89	123.29	-1.0377					61	26	4	0	0	0	0.52439	1	9511	9511		51.193	4.7359	1	115190			26273	12514	21492	21519	29445	29445					0.12823462062578983
KSKFLQIDK	9	Unmodified	_KSKFLQIDK_					0	0	0			REV__ENST00000514047.1_1_5:24171013-24171163:+|nuORF	REV__ENST00000514047.1_1_5:24171013-24171163:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8313598632812	2	553.832049	1105.64954	-0.12008	-6.6502E-05	-3.596	-0.0019916	-3.7161	-0.0020581	553.8299276335473	138.55	4.0786	138.32	136.16	140.24	-0.22696					182	83	3	0	0	0	0.69913	1	13686	13686		18.262	3.3972	1	64451	+		26274	21243	21493	21520	29446	29446					0.10094577919790026
KSKHSENM	8	Unmodified	_KSKHSENM_					0	0	0			REV__tr|A0A7D6ZXA0|A0A7D6ZXA0_9CLOTArsenatereductaseArsCOS=ClostridiumintestinaleOX=36845GN=HZF06_12560PE=4SV=1	REV__tr|A0A7D6ZXA0|A0A7D6ZXA0_9CLOTArsenatereductaseArsCOS=ClostridiumintestinaleOX=36845GN=HZF06_12560PE=4SV=1	MSMS	OvCa9_classI_Rep3	3	480.73162841796875	2	480.732009	959.449465	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.627	1	51.455	50.955	51.955	-3.1715								0	0	0	0.30129	1	1415	1415		21.96	2.5999	1		+		26275	32323	21494	21521	29447	29447					-0.03188220019455912
KSKICDYY	8	Unmodified	_KSKICDYY_					0	0	0			REV__ENSG00000188334|ENST00000344839|BSPH1	REV__ENSG00000188334|ENST00000344839|BSPH1	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.95489501953125	2	510.24696	1018.47937	-0.33153	-0.00016916	0.41982	0.00021421	0.08829	4.505E-05	510.24702486358376	42.687	0.43043	42.687	42.496	42.926	0					13	9	2	0	0	0	0.028476	1	2783	2783		40.778	15.204	1	146780	+		26276	22707	21495	21522	29448	29448					-0.02913281074143015
KSKIKEDKAS	10	Unmodified	_KSKIKEDKAS_					0	0	0			REV__nc|ENSG00000180347|Q6ZRS4-4|ITPRID1	REV__nc|ENSG00000180347|Q6ZRS4-4|ITPRID1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.328857421875	2	567.32987	1132.64519	-1.6483	-0.00093515	1.3836	0.00078493	-0.26477	-0.00015021	567.3305014697371	141.66	3.9446	141.43	139.35	143.3	-0.22697					200	79	3	0	0	0	0.72142	1	14202	14202		28.081	0.19925	1	83872	+		26277	29031	21496	21523	29449	29449					0.08417068706239661
KSKIKGKMS	9	Oxidation (M)	_KSKIKGKM(Oxidation (M))S_		KSKIKGKM(1)S		KSKIKGKM(48)S	0	0	1			REV__ENSG00000198730|ENST00000361367|CTR9	REV__ENSG00000198730|ENST00000361367|CTR9	MULTI-MSMS	OvCa99_classI_Rep5	1	511.8030700683594	2	511.804977	1021.5954	-0.99682	-0.00051018	-2.5483	-0.0013042	-3.5451	-0.0018144	511.80353775954643	27.716	0.39938	27.716	27.542	27.941	0					16	7	3	0	0	0	0.44568	1	847	847		47.657	10.498	1	269950	+		26278	23053	21497	21524	29450	29450		536			0.08546662496598856
KSKIPTYCSI	10	Unmodified	_KSKIPTYCSI_					0	0	0		nc|ENSG00000163138|Q8N7B6-3|PACRGL;nc|ENSG00000163138|Q8N7B6-2|PACRGL;ENSG00000163138|ENST00000503585|PACRGL	nc|ENSG00000163138|Q8N7B6-3|PACRGL	nc|ENSG00000163138|Q8N7B6-3|PACRGL	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.318359375	2	570.310092	1138.60563	1.6156	0.0009214	-0.088855	-5.0675E-05	1.5268	0.00087072	570.3100777275442	125.12	0.40233	125.12	124.93	125.33	0					13	9	2	0	0	0	0.026931	1	14463	14463		30.318	2.4355	1	90784			26279	6271	21498	21525	29451	29451					0.04187225431155639
KSKKKSMVR	9	Unmodified	_KSKKKSMVR_					0	0	0		tr|A0A553SF50|A0A553SF50_NIACItRNApseudouridinesynthaseAOS=NialliacirculansOX=1397GN=truAPE=3SV=1	tr|A0A553SF50|A0A553SF50_NIACItRNApseudouridinesynthaseAOS=NialliacirculansOX=1397GN=truAPE=3SV=1	tr|A0A553SF50|A0A553SF50_NIACItRNApseudouridinesynthaseAOS=NialliacirculansOX=1397GN=truAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.3096923828125	2	546.339518	1090.66448	-0.30698	-0.00016771	1.1613	0.00063446	0.85431	0.00046674	546.3406107947739	51.099	0.12742	51.099	50.993	51.12	0					4	2	2	0	0	0	0.027403	1	3913	3913		72.879	18.103	1	49230			26280	32991	21499	21526	29452	29452					0.12277746516133448
KSKNARAE	8	Unmodified	_KSKNARAE_					0	0	0			REV__L1P3_dup682|chr3:196908842-196910335:+|1.1693758815815145|0.2885488685750818|2.02|428.0|1|1|sense	REV__L1P3_dup682|chr3:196908842-196910335:+|1.1693758815815145|0.2885488685750818|2.02|428.0|1|1|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	452.2538757324219	2	452.253966	902.493378	0.86129	0.00038952	-0.9954	-0.00045017	-0.13411	-6.065E-05	452.2534208986577	33.657	1.7812	30.947	30.722	32.503	-2.7097					88	35	4	0	0	0	0.74496	1	1265	1265		29.17	0.020503	1	1170300	+		26281	28454	21500	21527	29453	29453					0.03823132469176471
KSKNTIVTK	9	Unmodified	_KSKNTIVTK_					0	0	0			REV__ENSG00000188596|ENST00000524981|CFAP54	REV__ENSG00000188596|ENST00000524981|CFAP54	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.7922058105469	2	509.816399	1017.61824	1.9354	0.00098669	3.9537	0.0020157	5.8891	0.0030024	509.81830367359004	87.589	0.50172	87.589	87.42	87.921	0					22	11	3	0	0	0	0.027462	1	9320	9320		30.569	0	1	667830	+		26282	22722	21501	21528	29454	29454					0.11014004885714712
KSKQRFRQ	8	Unmodified	_KSKQRFRQ_					0	0	0			REV__nc|ENSG00000122420|P43088-6|PTGFR	REV__nc|ENSG00000122420|P43088-6|PTGFR	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.310546875	2	539.317432	1076.62031	-0.65363	-0.00035251	2.3122	0.001247	1.6586	0.00089449	539.3183155948535	68.093	0.31214	68.093	67.88	68.192	0					13	7	2	0	0	0	0.028476	1	6380	6380		29.15	0	1	184510	+		26283	18595	21502	21529	29455	29455					0.08506478414165031
KSKRKERRNYE	11	Unmodified	_KSKRKERRNYE_					0	0	0			REV__chr12:91002578-91007836|96|28.81|0.0|14.24|-|2|TE_info:L2a,L2a_dup124733,L2,LINE,donor,+,91007836,91008983|EPYC,None|9	REV__chr12:91002578-91007836|96|28.81|0.0|14.24|-|2|TE_info:L2a,L2a_dup124733,L2,LINE,donor,+,91007836,91008983|EPYC,None|9	MULTI-SECPEP	OvCa9_classI_Rep2	2	499.28631591796875	3	498.614696	1492.82226	0.11082	5.5255E-05	0.61637	0.00030733	0.72718	0.00036259	498.949130736078	79.443	0.61546	77.703	77.513	78.128	-1.7398					15	11	2	0	0	0	0.026132	1	6661	6661		25.892	6.629	1	17095	+		26284	15895	21503	21530	29456	29456					0.09555917309103279
KSKSPLPLTLQ	11	Unmodified	_KSKSPLPLTLQ_					0	0	0		nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3705444335938	2	606.371538	1210.72852	-3.14	-0.001904	-0.05994	-3.6346E-05	-3.1999	-0.0019404	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.70761	1	15052	15052		27.047	3.5246	1	257720			26285	859	21504	21531	29457	29457					0.13158805154080255
KSKSPLPLTLQ	11	Unmodified	_KSKSPLPLTLQ_					0	0	0		nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-MSMS	OvCa9_classI_Rep3	3	606.36865234375	2	606.371538	1210.72852	-2.264	-0.0013728	-1.0272	-0.00062285	-3.2912	-0.0019957	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.72064	1	12477	12477		22.58	1.6327	1	205770			26286	859	21504	21531	29458	29458					0.13158805154080255
KSKSPLPLTLQ	11	Unmodified	_KSKSPLPLTLQ_					0	0	0		nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.369873046875	2	606.371538	1210.72852	-1.3399	-0.00081245	-1.8512	-0.0011225	-3.191	-0.001935	606.3703052098949	148.27	2.4393	146.84	145.43	147.87	-1.4351					149	49	5	0	0	0	0.70761	1	14504	14504		27.047	0.3544	1	591330			26287	859	21504	21531	29459	29459					0.13158805154080255
KSKVALKALG	10	Unmodified	_KSKVALKALG_					0	0	0			REV__tr|A0A553SLV2|A0A553SLV2_NIACISerine/threonineproteinkinaseOS=NialliacirculansOX=1397GN=CEQ21_21330PE=3SV=1	REV__tr|A0A553SLV2|A0A553SLV2_NIACISerine/threonineproteinkinaseOS=NialliacirculansOX=1397GN=CEQ21_21330PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.836669921875	2	507.837134	1013.65972	1.5913	0.0008081	-1.9271	-0.00097867	-0.33587	-0.00017057	507.8360989059997	28.421	0.96409	25.712	25.443	26.407	-2.7097					44	20	3	0	0	0	0.6349	1	604	604		37.812	2.1932	1	67466	+		26288	30268	21505	21532	29460	29460					0.15343185645042468
KSKVYSKTPI	10	Unmodified	_KSKVYSKTPI_					0	0	0			REV__ENST00000379887.8_2_15:72877016-72877142:+|nuORF	REV__ENST00000379887.8_2_15:72877016-72877142:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8428955078125	2	575.845156	1149.67576	-4.018	-0.0023138	0.54994	0.00031668	-3.4681	-0.0019971	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.64697	1	12252	12252		36.447	1.2947	1	445630	+		26289	25165	21506	21533	29461	29461					0.10690847091291289
KSKVYSKTPI	10	Unmodified	_KSKVYSKTPI_					0	0	0			REV__ENST00000379887.8_2_15:72877016-72877142:+|nuORF	REV__ENST00000379887.8_2_15:72877016-72877142:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8440551757812	2	575.845156	1149.67576	-0.33973	-0.00019563	-2.5857	-0.0014889	-2.9254	-0.0016846	575.8433458482052	142.38	3.7668	140.93	139.05	142.82	-1.4532					179	72	3	0	0	0	0.71173	1	13926	13926		29.17	0.020503	1	165140	+		26290	25165	21506	21533	29462	29462					0.10690847091291289
KSKYVQGLTD	10	Unmodified	_KSKYVQGLTD_					0	0	0			REV__SAMD9|p.E1289Dfs*17|1|0.04|ENSG00000205413|chr7:93102231-93102232|-/AG|frameshift_variant	REV__SAMD9|p.E1289Dfs*17|1|0.04|ENSG00000205413|chr7:93102231-93102232|-/AG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	569.8350830078125	2	569.808771	1137.60299	-0.55503	-0.00031626	2.3447	0.0013361	1.7897	0.0010198	570.3118812950488	99.685	0.15366	97.36	97.263	97.417	-2.3253					4	2	2	0	0	0	0.026994	1	8895	8895		8.6937	0	1	6289.9	+		26291	23216	21507	21534	29463	29463					0.03969093297860127
KSLAAQIEV	9	Unmodified	_KSLAAQIEV_					0	0	0			REV__ENSG00000112118|ENST00000596288|MCM3	REV__ENSG00000112118|ENST00000596288|MCM3	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.31365966796875	2	479.782025	957.549496	0.16613	7.9708E-05	-0.67255	-0.00032268	-0.50641	-0.00024297	479.7818808887195	31.625	0.2481	31.625	31.509	31.757	0					9	4	3	0	0	0	0.027462	1	1312	1312		54.776	0	1	45656	+		26292	18075	21508	21535	29464	29464					0.06902340585986622
KSLAAQIEV	9	Unmodified	_KSLAAQIEV_					0	0	0			REV__ENSG00000112118|ENST00000596288|MCM3	REV__ENSG00000112118|ENST00000596288|MCM3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	479.782025	957.549496	0.86723	0.00041608	0.77272	0.00037074	1.64	0.00078682	479.78206051904937	34.318	2.0435	31.53	30.458	32.502	-2.7881	-0.047591	0.00038644	NaN	64.207	73	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20325	+		26293	18075	21508	21535							0.06902340585986622
KSLASTGVAM	10	Unmodified	_KSLASTGVAM_					0	0	0			REV__ENSG00000256980|ENST00000370388|KHDC1L	REV__ENSG00000256980|ENST00000370388|KHDC1L	MULTI-MSMS	OvCa9_classI_Rep3	3	482.7605285644531	2	482.760235	963.505917	2.1391	0.0010327	-2.3365	-0.001128	-0.1974	-9.5296E-05	482.7588804234167	57.803	3.1186	54.676	53.456	56.575	-3.1264					158	85	3	0	0	0	0.65434	1	1673	1673		35.618	5.3006	1	89902	+		26294	23541	21509	21536	29465	29465					0.022704078172068876
KSLDIRLSN	9	Unmodified	_KSLDIRLSN_					0	0	0			REV__ENSG00000137766|ENST00000260323|UNC13C	REV__ENSG00000137766|ENST00000260323|UNC13C	MULTI-MSMS	OvCa9_classI_Rep2	2	523.30322265625	2	523.303655	1044.59276	-0.69596	-0.0003642	0.54848	0.00028702	-0.14748	-7.7179E-05	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.69403	1	13781	13781		19.997	2.6318	1	130240	+		26295	19474	21510	21537	29466	29466					0.07224530363282611
KSLEIRTLA	9	Unmodified	_KSLEIRTLA_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;CTNNA1-KDM3B|1|fusion	ENSG00000044115|ENST00000302763|CTNNA1;CTNNA1-KDM3B|1|fusion	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.8020629882812	2	515.816399	1029.61824	-0.60021	-0.0003096	-2.495	-0.0012869	-3.0952	-0.0015965	515.815425416195	48.675	0.1771	48.675	48.585	48.762	0					5	3	2	0	0	0	0.027462	1	3590	3590		24.519	10.382	1	24164			26296	1131;693	21511	21538	29467	29467					0.10462004885721399
KSLEKIAELF	10	Unmodified	_KSLEKIAELF_					0	0	0		tr|A0A7D6W3J6|A0A7D6W3J6_9CLOTDnaDdomainproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10095PE=4SV=1	tr|A0A7D6W3J6|A0A7D6W3J6_9CLOTDnaDdomainproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10095PE=4SV=1	tr|A0A7D6W3J6|A0A7D6W3J6_9CLOTDnaDdomainproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10095PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3365478515625	2	589.344989	1176.67542	-0.99558	-0.00058674	-2.469	-0.0014551	-3.4645	-0.0020418	589.3433618627441	145.15	3.8411	143.72	141.74	145.58	-1.4357					179	73	4	0	0	0	0.74374	1	14295	14295		25.574	2.5316	1	92509			26297	35454	21512	21539	29468	29468					0.09415427371413898
KSLEKKHET	9	Unmodified	_KSLEKKHET_					0	0	0			REV__ENSG00000167014|ENST00000340827|TERB2	REV__ENSG00000167014|ENST00000340827|TERB2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.2783203125	2	550.308938	1098.60332	-0.002671	-1.4699E-06	2.6097	0.0014361	2.607	0.0014347	550.3101201756448	122.31	0.96236	120.94	120.44	121.41	-1.3666					28	18	2	0	0	0	0.027462	1	11493	11493		15.642	0	1	30064	+		26298	21248	21513	21540	29469	29469					0.05796513017708094
KSLERATQL	9	Unmodified	_KSLERATQL_					0	0	0		ENST00000496071.5_1_10:22607528-22608924:+|nuORF;ENSG00000148444|ENST00000376836|COMMD3	ENST00000496071.5_1_10:22607528-22608924:+|nuORF	ENST00000496071.5_1_10:22607528-22608924:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.3058471679688	2	523.303655	1044.59276	-0.71284	-0.00037303	0.64095	0.00033541	-0.071889	-3.762E-05	523.3036933574358	48.165	1.6469	45.057	44.482	46.129	-3.1077					80	31	4	0	0	0	0.13326	1	2637	2637		88.177	20.683	1	648070			26299	5413	21514	21541	29470	29470					0.07224530363282611
KSLFGRISSY	10	Unmodified	_KSLFGRISSY_					0	0	0			REV__RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	REV__RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	579.3170776367188	2	579.319306	1156.62406	-1.8182	-0.0010533	-1.7368	-0.0010062	-3.555	-0.0020595	579.3181889414963	38.501	0.98943	35.791	35.568	36.558	-2.7097					52	19	3	0	0	0	0.55359	1	1830	1830		47.657	8.4045	1	338070	+		26300	21802	21515	21542	29471	29471					0.05201103397394036
KSLGSNRKK	9	Unmodified	_KSLGSNRKK_					0	0	0			REV__nc|ENSG00000136504|O95251-3|KAT7	REV__nc|ENSG00000136504|O95251-3|KAT7	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.3111572265625	2	509.311815	1016.60908	-2.7879	-0.0014199	2.4916	0.001269	-0.29628	-0.0001509	509.3129934375174	149.78	1.2073	148.35	147.97	149.18	-1.4344					57	23	4	0	0	0	0.69123	1	14799	14799		20.947	2.6225	1	218320	+		26301	19388	21516	21543	29472	29472					0.10143656320030914
KSLIQKVE	8	Unmodified	_KSLIQKVE_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.7645568847656	2	472.792392	943.570232	0.88377	0.00041784	-0.92086	-0.00043537	-0.037081	-1.7532E-05	472.7918178922163	56.666	1.1156	53.372	52.97	54.086	-3.2944					49	21	3	0	0	0	0.028476	1	3601	3601		25.574	0	1	101060	+		26302	18516	21517	21544	29473	29473					0.09618930965655181
KSLIRGTDPTL	11	Unmodified	_KSLIRGTDPTL_					0	0	0			REV__nc|ENSG00000180764|A2A3N6|PIPSL	REV__nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-MSMS	OvCa9_classI_Rep2	2	400.90289306640625	3	400.903072	1199.68739	1.9621	0.00078662	-2.2187	-0.00088949	-0.25661	-0.00010288	400.90216541386343	82.659	1.9425	81.06	80.645	82.588	-1.5989					100	38	4	0	0	0	0.16771	1	7051	7051		84.31	12.021	1	1122800	+		26303	26463	21518	21545	29474	29474					0.09553044114591103
KSLIRGTDPTL	11	Unmodified	_KSLIRGTDPTL_					0	0	0			REV__nc|ENSG00000180764|A2A3N6|PIPSL	REV__nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-MATCH	OvCa9_classI_Rep3	3		3	400.903072	1199.68739	0.022558	9.0437E-06	-0.12213	-4.8964E-05	-0.099575	-3.992E-05	400.9029632439613	83.579	2.0765	81.318	80.967	83.044	-2.261	0.16903	0.0015149	NaN	84.31	115	43	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1211700	+		26304	26463	21518	21545							0.09553044114591103
KSLKFKVSY	9	Unmodified	_KSLKFKVSY_					0	0	0		tr|A0A7D6ZHG8|A0A7D6ZHG8_9CLOTGlycosidehydrolasefamily65proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02965PE=3SV=1	tr|A0A7D6ZHG8|A0A7D6ZHG8_9CLOTGlycosidehydrolasefamily65proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02965PE=3SV=1	tr|A0A7D6ZHG8|A0A7D6ZHG8_9CLOTGlycosidehydrolasefamily65proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02965PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.8048706054688	2	550.329142	1098.64373	-0.68891	-0.00037913	-3.6371	-0.0020016	-4.326	-0.0023807	550.327071458999	68.372	0.53996	68.372	68.152	68.692	0					25	12	3	0	0	0	0.027462	1	6460	6460		42.396	13.226	1	1088200			26305	35578	21519	21546	29475	29475					0.09835479408138781
KSLKFKVSY	9	Unmodified	_KSLKFKVSY_					0	0	0		tr|A0A7D6ZHG8|A0A7D6ZHG8_9CLOTGlycosidehydrolasefamily65proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02965PE=3SV=1	tr|A0A7D6ZHG8|A0A7D6ZHG8_9CLOTGlycosidehydrolasefamily65proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02965PE=3SV=1	tr|A0A7D6ZHG8|A0A7D6ZHG8_9CLOTGlycosidehydrolasefamily65proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02965PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	550.329142	1098.64373	-0.054199	-2.9827E-05	-3.363	-0.0018507	-3.4172	-0.0018806	550.8286493174603	70.908	0.50975	68.188	67.957	68.466	-2.7196	-0.091762	0.00024485	NaN	34.173	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22439			26306	35578	21519	21546							0.09835479408138781
KSLKKLVE	8	Unmodified	_KSLKKLVE_					0	0	0		ENSG00000148484|ENST00000345264|RSU1	ENSG00000148484|ENST00000345264|RSU1	ENSG00000148484|ENST00000345264|RSU1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.7645568847656	2	472.810585	943.606617	0.51508	0.00024354	-0.68473	-0.00032375	-0.16964	-8.0209E-05	472.81010687585655	56.122	0.80775	52.827	52.617	53.425	-3.2944					21	15	2	0	0	0	0.028476	1	3601	3601		25.574	0	1	24175			26307	5415	21520	21547	29476	29476					0.1325580786236742
KSLKQVALP	9	Unmodified	_KSLKQVALP_					0	0	0		tr|A0A7D6VRM2|A0A7D6VRM2_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_20190PE=4SV=1	tr|A0A7D6VRM2|A0A7D6VRM2_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_20190PE=4SV=1	tr|A0A7D6VRM2|A0A7D6VRM2_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_20190PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.3055114746094	2	492.316035	982.617516	0.73646	0.00036257	-1.2489	-0.00061485	-0.51242	-0.00025227	492.3152898348004	114.88	1.8363	113.48	112.68	114.51	-1.3977					70	35	3	0	0	0	0.027462	1	10742	10742		39.253	0	1	47001			26308	34943	21521	21548	29477	29477					0.12551210236654242
KSLLFVNTL	9	Unmodified	_KSLLFVNTL_					0	0	0		ENST00000446987.5_1_7:44605603-44612175:-|nuORF;DDX56|p.L390Tfs*12|1|0.04|ENSG00000136271|chr7:44569860-44569861|-/T|frameshift_variant;nc|ENSG00000136271|Q9NY93-2|DDX56;ENSG00000136271|ENST00000258772|DDX56	ENST00000446987.5_1_7:44605603-44612175:-|nuORF	ENST00000446987.5_1_7:44605603-44612175:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	517.8156127929688	2	517.815867	1033.61718	0.23181	0.00012004	-0.50452	-0.00026125	-0.27271	-0.00014121	517.8152439273973	114.92	2.1217	113.87	113.4	115.53	-1.055					111	42	5	0	0	0	0.14445	1	8528	8528		85.862	10.819	1	141530			26309	723	21522	21549	29478	29478					0.10171790516801593
KSLLFVNTL	9	Unmodified	_KSLLFVNTL_					0	0	0		ENST00000446987.5_1_7:44605603-44612175:-|nuORF;DDX56|p.L390Tfs*12|1|0.04|ENSG00000136271|chr7:44569860-44569861|-/T|frameshift_variant;nc|ENSG00000136271|Q9NY93-2|DDX56;ENSG00000136271|ENST00000258772|DDX56	ENST00000446987.5_1_7:44605603-44612175:-|nuORF	ENST00000446987.5_1_7:44605603-44612175:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.8153686523438	2	517.815867	1033.61718	0.064242	3.3266E-05	-0.63643	-0.00032955	-0.57219	-0.00029629	517.8152387210511	115.26	1.708	113.86	113.25	114.96	-1.3977					91	33	5	0	0	0	0.20111	2	10740	10726;10740		76.17	8.7094	1	175080			26310	723	21522	21549	29479;29480	29480					0.10171790516801593
KSLLFVNTL	9	Unmodified	_KSLLFVNTL_					0	0	0		ENST00000446987.5_1_7:44605603-44612175:-|nuORF;DDX56|p.L390Tfs*12|1|0.04|ENSG00000136271|chr7:44569860-44569861|-/T|frameshift_variant;nc|ENSG00000136271|Q9NY93-2|DDX56;ENSG00000136271|ENST00000258772|DDX56	ENST00000446987.5_1_7:44605603-44612175:-|nuORF	ENST00000446987.5_1_7:44605603-44612175:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	517.815867	1033.61718	0.39312	0.00020356	-0.6643	-0.00034399	-0.27119	-0.00014042	517.815231740093	113.95	1.5798	113.84	113.27	114.85	-0.11777	-0.019171	-7.4898E-05	NaN	85.862	89	31	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134040			26311	723	21522	21549							0.10171790516801593
KSLLRSPEN	9	Unmodified	_KSLLRSPEN_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	OvCa9_classI_Rep3	3	522.2979125976562	2	522.29583	1042.57711	-0.86049	-0.00044943	3.8713	0.002022	3.0108	0.0015725	522.2974281798174	100.54	1.3601	98.933	98.612	99.972	-1.6053					79	26	5	0	0	0	0.48047	1	6823	6823		44.377	3.599	1	361150			26312	1811	21523	21550	29481	29481					0.057522438462456194
KSLNRYILL	9	Unmodified	_KSLNRYILL_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MULTI-SECPEP	OvCa9_classI_Rep3	3	560.3123779296875	2	560.347866	1118.68118	-1.3187	-0.00073894	0.94609	0.00053014	-0.37264	-0.00020881	560.348698969794	82.92	0.92926	80.623	80.381	81.311	-2.2963					37	17	3	0	0	0	0.027462	1	4701	4701		29.15	0	1	49680	+		26313	19860	21524	21551	29482	29482					0.1265857067376146
KSLPLVTQL	9	Unmodified	_KSLPLVTQL_					0	0	0		ENST00000556514.5_1_14:77662417-77685215:+|nuORF	ENST00000556514.5_1_14:77662417-77685215:+|nuORF	ENST00000556514.5_1_14:77662417-77685215:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.2500915527344	2	499.815867	997.617182	2.1533	0.0010763	-0.19133	-9.5629E-05	1.962	0.00098063	499.81552964564185	107.42	0.75618	107.42	107.14	107.9	0					34	17	3	0	0	0	0.027462	1	12139	12139		25.574	0	1	672370			26314	13662	21525	21552	29483	29483					0.11827790516804271
KSLSLSPGK	9	Unmodified	_KSLSLSPGK_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211897|P01860-1|IGHG3	nc|ENSG00000211896|P01857-1|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.7766418457031	2	458.776742	915.538931	-1.1528	-0.00052886	1.1441	0.00052487	-0.0086935	-3.9884E-06	458.7771328761946	45.555	1.2527	42.517	42.075	43.328	-3.0385					55	23	3	0	0	0	0.20111	1	2333	2333		76.17	8.676	1	304260			26315	15299	21526	21553	29484	29484					0.07778357931567825
KSLSPNFSI	9	Unmodified	_KSLSPNFSI_					0	0	0			REV__ENSG00000178966|ENST00000445877|RMI1	REV__ENSG00000178966|ENST00000445877|RMI1	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.75115966796875	2	496.7742	991.533846	-0.81215	-0.00040346	0.59017	0.00029318	-0.22198	-0.00011027	496.774170140338	39.973	0.45412	39.973	39.84	40.294	0					21	9	4	0	0	0	0.02744	1	2402	2402		29.17	4.6509	1	196610	+		26316	22091	21527	21554	29485	29485					0.037740540689469526
KSLTDVKFSL	10	Unmodified	_KSLTDVKFSL_					0	0	0			REV__nc|ENSG00000144674|Q13439-3|GOLGA4	REV__nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	570.2852172851562	2	569.329339	1136.64412	-0.64427	-0.0003668	-2.1014	-0.0011964	-2.7457	-0.0015632	569.3280162288236	54.11	0.92225	50.863	50.466	51.388	-3.2474					42	17	4	0	0	0	0.027033	1	3329	3329		27.047	0	1	59587	+		26317	19927	21528	21555	29486	29486					0.08126854337319855
KSLVRLLLL	9	Unmodified	_KSLVRLLLL_					0	0	0		RNASE1|p.S50Kfs*7|1|0.04|ENSG00000129538|chr14:20801920-20801921|-/CGTT|frameshift_variant;ENSG00000129538|ENST00000397967|RNASE1	RNASE1|p.S50Kfs*7|1|0.04|ENSG00000129538|chr14:20801920-20801921|-/CGTT|frameshift_variant	RNASE1|p.S50Kfs*7|1|0.04|ENSG00000129538|chr14:20801920-20801921|-/CGTT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	527.8698120117188	2	527.870977	1053.7274	-1.3813	-0.00072913	2.0933	0.001105	0.71202	0.00037586	527.8713910531205	116.68	2.0312	116.55	116.22	118.25	-0.12869					98	40	4	0	0	0	0.64427	1	11155	11155		26.693	2.4902	1	144700			26318	3934	21529	21556	29487	29487					0.20268635575848748
KSLVRLLLL	9	Unmodified	_KSLVRLLLL_					0	0	0		RNASE1|p.S50Kfs*7|1|0.04|ENSG00000129538|chr14:20801920-20801921|-/CGTT|frameshift_variant;ENSG00000129538|ENST00000397967|RNASE1	RNASE1|p.S50Kfs*7|1|0.04|ENSG00000129538|chr14:20801920-20801921|-/CGTT|frameshift_variant	RNASE1|p.S50Kfs*7|1|0.04|ENSG00000129538|chr14:20801920-20801921|-/CGTT|frameshift_variant	MSMS	OvCa9_classI_Rep3	3	527.8712158203125	2	527.870977	1053.7274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.97	1	117.94	117.44	118.44	-1.0271								0	0	0	0.1756	1	9001	9001		40.778	6.6056	1				26319	3934	21529	21556	29488	29488					0.20268635575848748
KSLVRLLLL	9	Unmodified	_KSLVRLLLL_					0	0	0		RNASE1|p.S50Kfs*7|1|0.04|ENSG00000129538|chr14:20801920-20801921|-/CGTT|frameshift_variant;ENSG00000129538|ENST00000397967|RNASE1	RNASE1|p.S50Kfs*7|1|0.04|ENSG00000129538|chr14:20801920-20801921|-/CGTT|frameshift_variant	RNASE1|p.S50Kfs*7|1|0.04|ENSG00000129538|chr14:20801920-20801921|-/CGTT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.87060546875	2	527.870977	1053.7274	-2.1953	-0.0011589	2.0164	0.0010644	-0.17898	-9.4478E-05	527.8718847076725	119.34	2.3787	117.99	117.58	119.95	-1.3444					59	45	2	0	0	0	0.23241	5	11219	11183;11193;11206;11219;11244		70.816	18.622	1	151710			26320	3934	21529	21556	29489;29490;29491;29492;29493	29492					0.20268635575848748
KSLVSAPTQI	10	Unmodified	_KSLVSAPTQI_					0	0	0		nc|ENSG00000158636|Q7Z589-6|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY;ENST00000427574.6_1_11:76157982-76207767:+|nuORF;nc|ENSG00000158636|Q7Z589-2|EMSY	nc|ENSG00000158636|Q7Z589-6|EMSY	nc|ENSG00000158636|Q7Z589-6|EMSY	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.281494140625	2	522.308406	1042.60226	-0.38177	-0.0001994	2.6962	0.0014082	2.3144	0.0012088	522.3088966129308	73.623	0.89674	73.623	73.317	74.214	0					40	22	3	0	0	0	0.026906	1	7222	7222		33.922	12.236	1	833470			26321	5966	21530	21557	29494	29494					0.08266298648823067
KSLVSKISL	9	Unmodified	_KSLVSKISL_					0	0	0		ENST00000484919.5_1_8:67405883-67422509:+|nuORF	ENST00000484919.5_1_8:67405883-67422509:+|nuORF	ENST00000484919.5_1_8:67405883-67422509:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	487.81610107421875	2	487.815867	973.617182	-0.66632	-0.00032504	-0.52719	-0.00025717	-1.1935	-0.00058221	487.81538755588923	53.729	0.86613	53.729	53.347	54.214	0					47	20	3	0	0	0	0.35694	1	4273	4273		56.434	3.4971	1	801140			26322	12607	21531	21558	29495	29495					0.12931790516802266
KSLVTNNLN	9	Unmodified	_KSLVTNNLN_					0	0	0			REV__ENSG00000136628|ENST00000366923|EPRS1	REV__ENSG00000136628|ENST00000366923|EPRS1	MSMS	OvCa99_classI_Rep5	1	501.7806091308594	2	501.782556	1001.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.131	1	45.131	44.631	45.631	0								0	0	0	0.14175	1	3098	3098		65.465	5.3471	1		+		26323	19395	21532	21559	29496	29496					0.049845549548990675
KSMDGIHHINR	11	Unmodified	_KSMDGIHHINR_					0	0	0		L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|145|3|sense	L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|145|3|sense	L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|145|3|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.26263427734375	3	436.559422	1306.65644	0.35164	0.00015351	2.9275	0.001278	3.2791	0.0014315	436.5589911759996	65.038	0.28728	61.552	61.456	61.743	-3.4854					9	5	2	0	0	0	0.025294	1	4657	4657		57.149	12.127	1	10289			26324	14782	21533	21560	29497	29497					0.015375675287486956
KSMQAKAK	8	Unmodified	_KSMQAKAK_					0	0	0			REV__tr|A0A7D7A2M1|A0A7D7A2M1_9CLOTIron-containingalcoholdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17690PE=4SV=1	REV__tr|A0A7D7A2M1|A0A7D7A2M1_9CLOTIron-containingalcoholdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17690PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	446.7782287597656	2	446.257662	890.500772	0.34069	0.00015204	-3.2064	-0.0014309	-2.8657	-0.0012788	446.2544036532075	55.924	0.16905	55.924	55.804	55.973	0					5	3	2	0	0	0	0.028476	1	4597	4597		34.173	9.6685	1	67638	+		26325	32545	21534	21561	29498	29498					0.05114148745246894
KSMSDQHRLI	10	Oxidation (M)	_KSM(Oxidation (M))SDQHRLI_		KSM(1)SDQHRLI		KSM(82)SDQHRLI	0	0	1			REV__ENSG00000216937|ENST00000639629|CCDC7	REV__ENSG00000216937|ENST00000639629|CCDC7	MULTI-MSMS	OvCa99_classI_Rep5	1	615.8159790039062	2	615.816604	1229.61866	0.42951	0.0002645	-4.2967	-0.002646	-3.8672	-0.0023815	615.8135297732185	72.006	0.41376	72.006	71.835	72.249	0					17	9	2	0	0	0	0.28845	1	6997	6997		82.241	14.747	1	979450	+		26326	23324	21535	21562	29499	29499		544			0.01303056543247294
KSMSDQHRLI	10	Oxidation (M)	_KSM(Oxidation (M))SDQHRLI_					0	0	1			REV__ENSG00000216937|ENST00000639629|CCDC7	REV__ENSG00000216937|ENST00000639629|CCDC7	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	615.816604	1229.61866	0.42951	0.0002645	-4.2967	-0.002646	-3.8672	-0.0023815	615.8135297732185	72.006	0.41376	72.006	71.835	72.249	0	0	0	NaN	82.241	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	979450	+		26327	23324	21535	21562				544			0.01303056543247294
KSNEEQVPQ	9	Unmodified	_KSNEEQVPQ_					0	0	0			REV__ENSG00000172238|ENST00000306011|ATOH1	REV__ENSG00000172238|ENST00000306011|ATOH1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.3072509765625	2	529.759278	1057.504	-0.8333	-0.00044145	0.84899	0.00044976	0.015685	8.3092E-06	529.7594544027816	59.043	1.7341	55.651	55.35	57.084	-3.392					75	34	4	0	0	0	0.027304	1	3997	3997		77.318	31.345	1	508000	+		26328	21684	21536	21563	29500	29500					-0.022449296670401964
KSNKLTLKQIL	11	Unmodified	_KSNKLTLKQIL_					0	0	0		ENST00000484571.5_1_2:98709636-98715687:+|nuORF;VWA3B|p.M316Ifs*8|1|0.04|ENSG00000168658|chr2:98133899-98133899|G/-|frameshift_variant;nc|ENSG00000168658|Q502W6-2|VWA3B;nc|ENSG00000168658|Q502W6-8|VWA3B;ENST00000409460.5_1_2:98703705-98907168:+|nuORF;ENSG00000168658|ENST00000477737|VWA3B;nc|ENSG00000168658|Q502W6-6|VWA3B	ENST00000484571.5_1_2:98709636-98715687:+|nuORF	ENST00000484571.5_1_2:98709636-98715687:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	643.4076538085938	2	643.413737	1284.81292	-6.0899	-0.0039183	-3.9676	-0.0025528	-10.058	-0.0064712	643.4113037901998	164.11	0.25311	162.48	162.32	162.57	-1.6336					13	5	4	0	0	0	0.70761	1	16210	16210		27.047	1.4733	1	815040			26329	6931	21537	21564	29501	29501					0.18190755970840655
KSNLALTPPLP	11	Unmodified	_KSNLALTPPLP_					0	0	0			REV__ENST00000485887.1_1_2:25043436-25046221:-|nuORF	REV__ENST00000485887.1_1_2:25043436-25046221:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8428955078125	2	575.845156	1149.67576	-4.018	-0.0023138	0.54994	0.00031668	-3.4681	-0.0019971	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.67529	1	12210	12210		37.812	6.2817	1	445630	+		26330	26574	21538	21565	29502	29502					0.10690847091291289
KSNNALIKQ	9	Unmodified	_KSNNALIKQ_					0	0	0		tr|A0A7D6ZYL2|A0A7D6ZYL2_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03140PE=4SV=1	tr|A0A7D6ZYL2|A0A7D6ZYL2_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03140PE=4SV=1	tr|A0A7D6ZYL2|A0A7D6ZYL2_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03140PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.28765869140625	2	508.298373	1014.58219	-1.1369	-0.00057786	-3.0028	-0.0015263	-4.1396	-0.0021042	508.2965420250759	34.596	0.32718	34.596	34.351	34.679	0					9	6	2	0	0	0	0.027462	1	1661	1661		27.882	3.6795	1	52937			26331	35921	21539	21566	29503	29503					0.07548547708847764
KSNNKRIR	8	Unmodified	_KSNNKRIR_					0	0	0			REV__L1PB1_dup435|chr1:148902763-148905178:-|1.8547645190966555|0.2878265206874703|2.69|429.0|12|1|sense	REV__L1PB1_dup435|chr1:148902763-148905178:-|1.8547645190966555|0.2878265206874703|2.69|429.0|12|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.2695617675781	2	508.309606	1014.60466	0.036449	1.8527E-05	2.4019	0.0012209	2.4383	0.0012394	508.31071783433566	30.905	0.6786	30.905	30.781	31.46	0					19	13	3	0	0	0	0.028476	1	1243	1243		16.473	4.9621	1	76182	+		26332	28586	21540	21567	29504	29504					0.09794191897140081
KSNPIIRTV	9	Unmodified	_KSNPIIRTV_					0	0	0		ENST00000470741.1_1_22:43015781-43027088:-|nuORF;nc|ENSG00000100243|P00387-2|CYB5R3;ENSG00000100243|ENST00000352397|CYB5R3;nc|ENSG00000100243|P00387-3|CYB5R3	ENST00000470741.1_1_22:43015781-43027088:-|nuORF	ENST00000470741.1_1_22:43015781-43027088:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.317626953125	2	514.316566	1026.61858	-0.98722	-0.00050774	0.43858	0.00022557	-0.54864	-0.00028217	514.316698680198	55.48	1.7737	52.185	51.854	53.628	-3.2944					86	34	4	0	0	0	0.19314	1	3503	3503		77.533	12.376	1	571240			26333	2034	21541	21568	29505	29505					0.10633424605566688
KSNPIIRTV	9	Unmodified	_KSNPIIRTV_					0	0	0		ENST00000470741.1_1_22:43015781-43027088:-|nuORF;nc|ENSG00000100243|P00387-2|CYB5R3;ENSG00000100243|ENST00000352397|CYB5R3;nc|ENSG00000100243|P00387-3|CYB5R3	ENST00000470741.1_1_22:43015781-43027088:-|nuORF	ENST00000470741.1_1_22:43015781-43027088:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.316566	1026.61858	-0.9513	-0.00048927	0.77519	0.00039869	-0.17611	-9.0579E-05	514.316841601359	55.061	2.2384	52.247	51.225	53.463	-2.8139	0.03096	0.00019562	NaN	77.533	93	44	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198240			26334	2034	21541	21568							0.10633424605566688
KSNQGLVSKVT	11	Unmodified	_KSNQGLVSKVT_					0	0	0			REV__nc|ENSG00000137812|Q8NG31-3|KNL1	REV__nc|ENSG00000137812|Q8NG31-3|KNL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	581.3114013671875	2	580.83532	1159.65609	-1.0413	-0.00060485	0.7202	0.00041832	-0.32114	-0.00018653	580.8356377769948	56.006	0.85916	52.711	52.464	53.323	-3.2944					27	16	2	0	0	0	0.022071	1	3563	3563		68.846	8.7279	1	88069	+		26335	19480	21542	21569	29506	29506					0.08264471080519797
KSPAIGKYK	9	Unmodified	_KSPAIGKYK_					0	0	0			REV__tr|A0A553SQ22|A0A553SQ22_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16765PE=4SV=1	REV__tr|A0A553SQ22|A0A553SQ22_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16765PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	496.30078125	2	496.300384	990.586216	-0.35919	-0.00017827	0.21743	0.00010791	-0.14176	-7.0356E-05	496.30031555631194	121.97	1.1373	121.75	121.47	122.61	-0.21803					58	22	4	0	0	0	0.53483	1	11826	11826		39.253	5.0803	1	202890	+		26336	30599	21543	21570	29507	29507					0.0905463720255284
KSPEQSPPAI	10	Unmodified	_KSPEQSPPAI_					0	0	0		ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	MULTI-SECPEP	OvCa9_classI_Rep3	3	527.8172607421875	2	527.282389	1052.55022	-0.099945	-5.2699E-05	0.70751	0.00037306	0.60756	0.00032036	527.2817556766397	105.48	0.98892	104.13	103.89	104.87	-1.3482					38	18	3	0	0	0	0.026826	1	7417	7417		29.17	0	1	100390			26337	6288	21544	21571	29508	29508					0.026051352350577872
KSPKTKGKTG	10	Unmodified	_KSPKTKGKTG_					0	0	0			REV__ENSG00000126461|ENST00000360565|SCAF1	REV__ENSG00000126461|ENST00000360565|SCAF1	MULTI-MSMS	OvCa9_classI_Rep2	2	516.313232421875	2	516.314023	1030.61349	-4.2539	-0.0021964	4.0398	0.0020858	-0.21417	-0.00011058	516.3160035152533	156.4	1.1562	156.18	155.89	157.05	-0.22696					77	28	5	0	0	0	0.6349	1	15913	15913		37.812	7.3079	1	397210	+		26338	18783	21545	21572	29509	29509					0.0994112074295117
KSPLRHAR	8	Unmodified	_KSPLRHAR_					0	0	0		ENSG00000188636|ENST00000341255|RTL6	ENSG00000188636|ENST00000341255|RTL6	ENSG00000188636|ENST00000341255|RTL6	MULTI-MSMS	OvCa99_classI_Rep5	1	482.7926330566406	2	482.793592	963.572632	1.1104	0.00053611	-4.2198	-0.0020373	-3.1094	-0.0015012	482.79146252518456	155.03	3.9291	155.03	153.98	157.91	0					134	77	2	0	0	0	0.74992	1	18137	18137		26.693	2.4902	1	132880			26339	8485	21546	21573	29510	29510					0.08938824213976204
KSPPLTYKR	9	Unmodified	_KSPPLTYKR_					0	0	0			REV__chr7:76303865-76304159|140|10.83|0.04|7.99|+|1|HSPB1,None|1	REV__chr7:76303865-76304159|140|10.83|0.04|7.99|+|1|HSPB1,None|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.2406005859375	2	545.324391	1088.63423	-0.28103	-0.00015325	-1.9394	-0.0010576	-2.2204	-0.0012109	545.8249056056688	22.966	0.18794	22.966	22.854	23.042	0					5	3	2	0	0	0	0.027462	1	282	282		19.104	0	1	23890	+		26340	16099	21547	21574	29511	29511					0.09345711122591638
KSPPYSYET	9	Unmodified	_KSPPYSYET_					0	0	0			REV__ENSG00000187021|ENST00000358834|PNLIPRP1	REV__ENSG00000187021|ENST00000358834|PNLIPRP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.3077392578125	2	536.253297	1070.49204	2.4158	0.0012955	2.3785	0.0012755	4.7943	0.002571	536.2545722805044	108.18	0.42517	108.18	107.94	108.37	0					15	9	2	0	0	0	0.027461	1	12251	12251		32.812	4.5581	1	207220	+		26341	22625	21548	21575	29512	29512					-0.04038546410242816
KSPPYSYET	9	Unmodified	_KSPPYSYET_					0	0	0			REV__ENSG00000187021|ENST00000358834|PNLIPRP1	REV__ENSG00000187021|ENST00000358834|PNLIPRP1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	536.253297	1070.49204	0.89339	0.00047908	5.2712	0.0028267	6.1646	0.0033058	536.255978784327	109.27	0.47437	108.12	107.93	108.4	-1.1444	-0.039847	0.0012972	NaN	40.778	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10809	+		26342	22625	21548	21575							-0.04038546410242816
KSPPYSYET	9	Unmodified	_KSPPYSYET_					0	0	0			REV__ENSG00000187021|ENST00000358834|PNLIPRP1	REV__ENSG00000187021|ENST00000358834|PNLIPRP1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	536.253297	1070.49204	-0.30512	-0.00016362	6.3372	0.0033983	6.0321	0.0032347	536.2564708604066	109.79	0.63242	108.19	108.02	108.65	-1.6011	0.023663	0.0024405	NaN	40.778	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19694	+		26343	22625	21548	21575							-0.04038546410242816
KSPYFLSQL	9	Unmodified	_KSPYFLSQL_					0	0	0		ENSG00000100852|ENST00000345122|ARHGAP5;nc|ENSG00000100852|Q13017-2|ARHGAP5	ENSG00000100852|ENST00000345122|ARHGAP5	ENSG00000100852|ENST00000345122|ARHGAP5	MULTI-MSMS	OvCa99_classI_Rep5	1	541.7979125976562	2	541.797675	1081.5808	2.1336	0.001156	-3.8686	-0.002096	-1.7349	-0.00093998	541.7954928707851	77.274	0.92337	77.274	76.961	77.884	0					49	21	4	0	0	0	0.049969	1	7775	7775		118.74	1.8395	1	6391800			26344	2112	21549	21576	29513	29513					0.043269136200933644
KSQDNVIKV	9	Unmodified	_KSQDNVIKV_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7994384765625	2	515.798206	1029.58186	-1.7067	-0.00088034	1.3607	0.00070187	-0.34601	-0.00017847	515.7986493325816	50.269	1.7884	47.128	46.715	48.503	-3.1416					97	34	4	0	0	0	0.07097	2	2889	2878;2889		106.68	21.522	1	524120			26345	3633	21550	21577	29514;29515	29515					0.06825127989009161
KSQDNVIKV	9	Unmodified	_KSQDNVIKV_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;nc|ENSG00000124207|P55060-2|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.798206	1029.58186	-0.91232	-0.00047057	0.70271	0.00036246	-0.20961	-0.00010811	515.7982131535019	49.959	1.239	47.165	46.785	48.024	-2.794	0.018755	-0.00045178	NaN	106.68	64	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145090			26346	3633	21550	21577							0.06825127989009161
KSQFGKFMNVL	11	Unmodified	_KSQFGKFMNVL_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-MSMS	OvCa99_classI_Rep5	1	433.56903076171875	3	433.569036	1297.68528	2.4126	0.001046	-2.8109	-0.0012187	-0.39828	-0.00017268	433.56777291242446	87.651	0.62457	87.651	87.378	88.003	0					35	14	3	0	0	0	0.48315	1	9288	9288		55.084	10.062	1	1359700	+		26347	20520	21551	21578	29516	29516					0.048342921051698795
KSQINVDAGN	10	Unmodified	_KSQINVDAGN_					0	0	0			REV__nc|ENSG00000065413|Q8N8A2-5|ANKRD44	REV__nc|ENSG00000065413|Q8N8A2-5|ANKRD44	MULTI-MSMS	OvCa9_classI_Rep3	3	523.26953125	2	523.26727	1044.51999	1.3489	0.00070584	2.1543	0.0011273	3.5033	0.0018331	523.2682579368221	111.72	1.4316	110.62	110.2	111.63	-1.1038					79	28	4	0	0	0	0.47142	1	8143	8143		58.23	1.5089	1	588020	+		26348	16792	21552	21579	29517	29517					-0.0004922343014186481
KSQKNGKRK	9	Unmodified	_KSQKNGKRK_					0	0	0			REV__ENSG00000078403|ENST00000307729|MLLT10	REV__ENSG00000078403|ENST00000307729|MLLT10	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.7484741210938	2	537.330539	1072.64652	-0.29795	-0.0001601	-0.21888	-0.00011761	-0.51682	-0.0002777	537.330501707012	35.822	0.59959	35.822	35.429	36.029	0					19	12	3	0	0	0	0.027462	1	1860	1860		20.947	14.211	1	108250	+		26349	17024	21553	21580	29518	29518					0.11310747585639547
KSQRCGFV	8	Unmodified	_KSQRCGFV_					0	0	0			REV__nc|ENSG00000089250|P29475-3|NOS1	REV__nc|ENSG00000089250|P29475-3|NOS1	MULTI-MSMS	OvCa99_classI_Rep5	1	462.7397155761719	2	462.739637	923.464721	-0.41824	-0.00019354	0.40253	0.00018627	-0.015713	-7.2711E-06	462.7396736021877	48.271	1.0028	48.271	48.028	49.031	0					49	22	3	0	0	0	0.59148	1	3534	3534		65.803	5.5092	1	1830700	+		26350	17205	21554	21581	29519	29519					-7.308431599994947E-05
KSQRCGFV	8	Unmodified	_KSQRCGFV_					0	0	0			REV__nc|ENSG00000089250|P29475-3|NOS1	REV__nc|ENSG00000089250|P29475-3|NOS1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	462.739637	923.464721	-0.41824	-0.00019354	0.40253	0.00018627	-0.015713	-7.2711E-06	462.7396736021877	48.271	1.0028	48.271	48.028	49.031	0	0	0	NaN	65.803	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1830700	+		26351	17205	21554	21581							-7.308431599994947E-05
KSQRFLGML	9	Unmodified	_KSQRFLGML_					0	0	0			REV__ENSG00000182783|ENST00000641069|OR2T29	REV__ENSG00000182783|ENST00000641069|OR2T29	MULTI-MSMS	OvCa99_classI_Rep5	1	540.3028564453125	2	540.305144	1078.59573	0.034226	1.8493E-05	-2.7781	-0.001501	-2.7439	-0.0014826	540.3030642723793	66.543	0.88641	66.543	66.25	67.136	0					57	21	4	0	0	0	0.35444	1	6187	6187		56.721	7.5103	1	1615300	+		26352	22318	21555	21582	29520	29520					0.05958082216443472
KSRAGPLILV	10	Unmodified	_KSRAGPLILV_					0	0	0		chr15:89616495-89618152|402|16.09|0.71|4.51|+|2|TICRR,TICRR|1	chr15:89616495-89618152|402|16.09|0.71|4.51|+|2|TICRR,TICRR|1	chr15:89616495-89618152|402|16.09|0.71|4.51|+|2|TICRR,TICRR|1	MULTI-MSMS	OvCa9_classI_Rep2	2	527.3438110351562	2	527.342584	1052.67061	2.2817	0.0012032	-2.4212	-0.0012768	-0.13953	-7.3579E-05	527.3412130770646	27.081	0.8382	24.371	24.073	24.911	-2.7097					49	23	3	0	0	0	0.82648	1	420	420		15.642	0	1	32709			26353	364	21556	21583	29521	29521					0.1463858801932929
KSRFPDSHK	9	Unmodified	_KSRFPDSHK_					0	0	0			REV__ENSG00000104356|ENST00000401707|POP1	REV__ENSG00000104356|ENST00000401707|POP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.7890014648438	2	551.293622	1100.57269	0.34763	0.00019164	-0.13914	-7.6706E-05	0.20849	0.00011494	551.2936643610382	72.275	0.60071	72.275	72.045	72.645	0					24	14	3	0	0	0	0.027462	1	6996	6996		36.447	0	1	1423100	+		26354	17661	21557	21584	29522	29522					0.026427794233086388
KSRFRGSRL	9	Unmodified	_KSRFRGSRL_					0	0	0		ENST00000375167.1_1_11:118964738-118965206:-|nuORF;ENST00000530167.1_1_11:118964738-118965038:-|nuORF	ENST00000375167.1_1_11:118964738-118965206:-|nuORF	ENST00000375167.1_1_11:118964738-118965206:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8301391601562	2	553.830706	1105.64686	-3.0789	-0.0017052	1.7991	0.0009964	-1.2798	-0.00070877	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.60342	1	11765	11765		31.53	1.0262	1	308210			26355	11050	21558	21585	29523	29523					0.09826167305527633
KSRIITSGR	9	Unmodified	_KSRIITSGR_					0	0	0			REV__ENSG00000113645|ENST00000265293|WWC1	REV__ENSG00000113645|ENST00000265293|WWC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.2590026855469	2	509.311815	1016.60908	-0.90491	-0.00046088	-3.1383	-0.0015984	-4.0432	-0.0020592	509.3100968058652	34.232	0.57021	34.232	33.969	34.539	0					16	11	2	0	0	0	0.027462	1	1633	1633		37.812	14.769	1	47564	+		26356	18165	21559	21586	29524	29524					0.10143656320042282
KSRKVNRLLI	10	Unmodified	_KSRKVNRLLI_					0	0	0		tr|A0A7D7A6J7|A0A7D7A6J7_9CLOTSignalrecognitionparticlereceptorFtsYOS=ClostridiumintestinaleOX=36845GN=ftsYPE=3SV=1	tr|A0A7D7A6J7|A0A7D7A6J7_9CLOTSignalrecognitionparticlereceptorFtsYOS=ClostridiumintestinaleOX=36845GN=ftsYPE=3SV=1	tr|A0A7D7A6J7|A0A7D7A6J7_9CLOTSignalrecognitionparticlereceptorFtsYOS=ClostridiumintestinaleOX=36845GN=ftsYPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	409.60784912109375	3	409.606701	1225.79827	0.6889	0.00028218	2.4344	0.00099713	3.1233	0.0012793	409.60766459120623	104.29	12.102	103.72	103.28	115.38	-0.57639					699	244	5	0	0	0	0.55109	1	10313	10313		47.96	14.038	1	1628000			26357	36194	21560	21587	29525	29525					0.19440728613380998
KSRKVNRLLI	10	Unmodified	_KSRKVNRLLI_					0	0	0		tr|A0A7D7A6J7|A0A7D7A6J7_9CLOTSignalrecognitionparticlereceptorFtsYOS=ClostridiumintestinaleOX=36845GN=ftsYPE=3SV=1	tr|A0A7D7A6J7|A0A7D7A6J7_9CLOTSignalrecognitionparticlereceptorFtsYOS=ClostridiumintestinaleOX=36845GN=ftsYPE=3SV=1	tr|A0A7D7A6J7|A0A7D7A6J7_9CLOTSignalrecognitionparticlereceptorFtsYOS=ClostridiumintestinaleOX=36845GN=ftsYPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	409.60809326171875	3	409.606701	1225.79827	0.55097	0.00022568	2.443	0.0010007	2.994	0.0012264	409.60762934156605	108.64	8.1164	106.92	106.42	114.53	-1.7256					461	158	5	0	0	0	0.69073	1	10312	10312		31.53	1.2121	1	863570			26358	36194	21560	21587	29526	29526					0.19440728613380998
KSRLCGSWE	9	Unmodified	_KSRLCGSWE_					0	0	0		ENST00000577088.5_1_17:7487180-7490172:+|nuORF	ENST00000577088.5_1_17:7487180-7490172:+|nuORF	ENST00000577088.5_1_17:7487180-7490172:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.75	2	533.260933	1064.50731	1.4427	0.00076932	-3.6004	-0.00192	-2.1577	-0.0011506	533.7608558428974	123.09	0.32871	123.09	123	123.33	0					9	6	2	0	0	0	0.027453	1	14175	14175		54.776	10.399	1	28742			26359	13954	21561	21588	29527	29527					-0.022359580940246815
KSRLLPRY	8	Unmodified	_KSRLLPRY_					0	0	0		ENST00000357717.6_1_10:14981831-14996009:-|nuORF	ENST00000357717.6_1_10:14981831-14996009:-|nuORF	ENST00000357717.6_1_10:14981831-14996009:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.3110961914062	2	516.819276	1031.624	0.18059	9.3331E-05	2.4987	0.0012914	2.6793	0.0013847	516.820570060837	31.675	0.54314	28.966	28.789	29.332	-2.7097					15	10	2	0	0	0	0.028476	1	1023	1023		33.516	4.366	1	16531			26360	10720	21562	21589	29528	29528					0.10945148188034182
KSRVKQVLQ	9	Unmodified	_KSRVKQVLQ_					0	0	0			REV__nc|ENSG00000101665|O15105-3|SMAD7	REV__nc|ENSG00000101665|O15105-3|SMAD7	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.2987060546875	2	543.343115	1084.67168	-0.49678	-0.00026992	-0.24023	-0.00013053	-0.737	-0.00040045	543.3429392122655	29.312	0.29945	29.312	29.186	29.486	0					9	5	2	0	0	0	0.027462	1	1033	1033		19.104	0.84144	1	41524	+		26361	17511	21563	21590	29529	29529					0.1327280238822368
KSRYIRKREKR	11	Unmodified	_KSRYIRKREKR_					0	0	0		ENST00000604081.1_1_12:54388028-54388532:-|nuORF	ENST00000604081.1_1_12:54388028-54388532:-|nuORF	ENST00000604081.1_1_12:54388028-54388532:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	507.64404296875	3	507.31458	1518.92191	-7.2505	-0.0036783	-1.6601	-0.00084219	-8.9106	-0.0045205	507.31400483839707	163.92	1.3967	162.53	161.26	162.66	-1.3925					92	31	4	0	0	0	0.72555	1	14224	14224		8.4073	2.4062	1	78750			26362	14261	21564	21591	29530	29530					0.18320779713667434
KSSAKFDDPLL	11	Unmodified	_KSSAKFDDPLL_					0	0	0			REV__PIP4K2C|p.V213Rfs*20|1|0.08|ENSG00000166908|chr12:57599187-57599188|-/AGGATCTCACTGTGTTCCCCGGGCTG|frameshift_variant	REV__PIP4K2C|p.V213Rfs*20|1|0.08|ENSG00000166908|chr12:57599187-57599188|-/AGGATCTCACTGTGTTCCCCGGGCTG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	610.353759765625	2	610.829703	1219.64485	1.2351	0.00075442	-3.1721	-0.0019376	-1.937	-0.0011832	610.8276193014088	35.113	0.35216	32.264	32.089	32.441	-2.849					9	6	2	0	0	0	0.026068	1	1083	1083		18.262	0	1	10428	+		26363	21235	21565	21592	29531	29531					0.04381648986372966
KSSDQPLTV	9	Unmodified	_KSSDQPLTV_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.76239013671875	2	487.761289	973.508025	0.41919	0.00020447	-0.60629	-0.00029572	-0.1871	-9.1259E-05	487.76076942504557	60.285	1.387	56.855	56.407	57.794	-3.43					63	27	4	0	0	0	0.1944	1	4072	4072		77.318	7.69	1	604500			26364	1789	21566	21593	29532	29532					0.020211598266769215
KSSGLFPFL	9	Unmodified	_KSSGLFPFL_					0	0	0		ENSG00000124107|ENST00000338380|SLPI	ENSG00000124107|ENST00000338380|SLPI	ENSG00000124107|ENST00000338380|SLPI	MULTI-MSMS	OvCa9_classI_Rep2	2	498.2810974121094	2	498.28166	994.548768	0.43376	0.00021614	-0.53163	-0.0002649	-0.097869	-4.8766E-05	498.28127650436284	131.63	1.4224	131.41	131	132.42	-0.22697					82	28	4	0	0	0	0.12365	3	12959	12959;12964;12984		90.777	18.255	1	388250			26365	3623	21567	21594	29533;29534;29535	29533					0.05127545936932165
KSSGLFPFL	9	Unmodified	_KSSGLFPFL_					0	0	0		ENSG00000124107|ENST00000338380|SLPI	ENSG00000124107|ENST00000338380|SLPI	ENSG00000124107|ENST00000338380|SLPI	MULTI-MSMS	OvCa9_classI_Rep3	3	498.2809143066406	2	498.28166	994.548768	-0.41723	-0.0002079	0.29547	0.00014723	-0.12177	-6.0673E-05	498.2816571764264	132.68	1.1796	131.56	131.24	132.42	-1.1249					65	23	4	0	0	0	0.21231	5	10623	10607;10611;10623;10642;10649		74.255	15.094	1	310840			26366	3623	21567	21594	29536;29537;29538;29539;29540	29538					0.05127545936932165
KSSGLFPFL	9	Unmodified	_KSSGLFPFL_					0	0	0		ENSG00000124107|ENST00000338380|SLPI	ENSG00000124107|ENST00000338380|SLPI	ENSG00000124107|ENST00000338380|SLPI	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.2811279296875	2	498.28166	994.548768	3.4548	0.0017215	-3.7364	-0.0018618	-0.28161	-0.00014032	498.27969539761534	133.03	1.2718	131.52	131.13	132.4	-1.5114					73	25	4	0	0	0	0.1804	2	12853	12853;12879		79.713	18.741	1	540930			26367	3623	21567	21594	29541;29542	29541					0.05127545936932165
KSSIFDELKGL	11	Unmodified	_KSSIFDELKGL_					0	0	0			REV__ENSG00000171798|ENST00000304613|KNDC1	REV__ENSG00000171798|ENST00000304613|KNDC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	413.21441650390625	3	412.899328	1235.67615	0.33184	0.00013702	1.8439	0.00076135	2.1757	0.00089836	412.90014018504115	29.001	0.24896	29.001	28.888	29.137	0					6	4	2	0	0	0	0.025908	1	1004	1004		21.78	0	1	14663	+		26368	21646	21568	21595	29543	29543					0.06774222020453635
KSSKRKKNP	9	Unmodified	_KSSKRKKNP_					0	0	0			REV__ENSG00000177791|ENST00000359322|MYOZ1	REV__ENSG00000177791|ENST00000359322|MYOZ1	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.8289184570312	2	536.832914	1071.65128	-2.2741	-0.0012208	-4.4771	-0.0024035	-6.7513	-0.0036243	536.830328046513	124.92	2.2203	123.53	122.97	125.19	-1.3908					87	42	4	0	0	0	0.46356	1	11887	11887		45.972	0.020292	1	342970	+		26369	22027	21569	21596	29544	29544					0.11831631728409775
KSSKYQSSH	9	Unmodified	_KSSKYQSSH_					0	0	0		nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.281005859375	2	526.261988	1050.50942	-1.4252	-0.00075001	1.8004	0.0009475	0.37527	0.00019749	526.2629403992788	44.075	0.25745	44.075	43.866	44.123	0					8	5	2	0	0	0	0.027462	1	2934	2934		10.866	0	1	67253			26370	1902	21570	21597	29545	29545					-0.01381206084556652
KSSRDLIGL	9	Unmodified	_KSSRDLIGL_					0	0	0			REV__nc|ENSG00000127914|Q99996-5|AKAP9	REV__nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.80682373046875	2	494.792924	987.571294	0.49322	0.00024404	3.2457	0.001606	3.7389	0.00185	494.79446862304474	97.978	1.1109	95.6	95.166	96.277	-2.3786					54	21	4	0	0	0	0.02744	1	8657	8657		52.937	3.4952	1	495090	+		26371	18830	21571	21598	29546	29546					0.07701145334567627
KSSSKVKAI	9	Unmodified	_KSSSKVKAI_					0	0	0			REV__ENSG00000124818|ENST00000371211|OPN5	REV__ENSG00000124818|ENST00000371211|OPN5	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.7427673339844	2	474.297842	946.581131	-0.20458	-9.703E-05	-1.9893	-0.0009435	-2.1938	-0.0010405	474.2965264275246	40.721	0.49548	40.721	40.386	40.881	0					16	10	2	0	0	0	0.027462	1	2449	2449		34.173	3.6689	1	86658	+		26372	18707	21572	21599	29547	29547					0.10570333339933313
KSSSLPPK	8	Unmodified	_KSSSLPPK_					0	0	0			REV__nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7	REV__nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7	MULTI-MSMS	OvCa99_classI_Rep5	1	422.25018310546875	2	422.25036	842.486168	1.7019	0.00071864	0.94365	0.00039846	2.6456	0.0011171	422.25050152578086	79.363	0.27556	79.363	79.16	79.436	0					13	6	3	0	0	0	0.65267	1	8096	8096		52.937	1.6012	1	415850	+		26373	23514	21573	21600	29548	29548					0.05862399868749435
KSSTVSEDV	9	Unmodified	_KSSTVSEDV_					0	0	0		ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	MULTI-SECPEP	OvCa99_classI_Rep5	1	476.7634582519531	2	476.235104	950.455655	-0.60033	-0.0002859	-0.57914	-0.00027581	-1.1795	-0.00056171	476.23470299426384	37.553	0.36805	37.553	37.438	37.806	0					9	7	2	0	0	0	0.027433	1	2052	2052		51.335	27.133	1	27699			26374	4513	21574	21601	29549	29549					-0.02155423306942339
KSTETEVIDLT	11	Unmodified	_KSTETEVIDLT_					0	0	0			REV__ENSG00000146233|ENST00000275016|CYP39A1	REV__ENSG00000146233|ENST00000275016|CYP39A1	MULTI-MSMS	OvCa99_classI_Rep5	1	618.32275390625	2	618.321908	1234.62926	0.79262	0.0004901	-0.39661	-0.00024523	0.39601	0.00024486	618.3215326136908	124.25	1.4482	124.25	123.92	125.37	0					114	32	5	0	0	0	0.68021	1	14414	14414		36.447	0	1	10117000	+		26375	20001	21575	21602	29550	29550					0.021333176786811237
KSTGFFTIK	9	Unmodified	_KSTGFFTIK_					0	0	0		FANCB|p.K829Sfs*12|1|0.15|ENSG00000181544|chrX:14843663-14843664|-/GAGAGGGAGATAAAATGGCCCTAGTTGAG|frameshift_variant;ENSG00000181544|ENST00000650831|FANCB	FANCB|p.K829Sfs*12|1|0.15|ENSG00000181544|chrX:14843663-14843664|-/GAGAGGGAGATAAAATGGCCCTAGTTGAG|frameshift_variant	FANCB|p.K829Sfs*12|1|0.15|ENSG00000181544|chrX:14843663-14843664|-/GAGAGGGAGATAAAATGGCCCTAGTTGAG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.7874145507812	2	514.792392	1027.57023	-0.043179	-2.2228E-05	-3.9486	-0.0020327	-3.9918	-0.002055	514.7901413853975	78.15	1.5935	75.797	75.497	77.091	-2.3527					42	31	2	0	0	0	0.027411	1	4177	4177		54.776	5.3348	1	143730			26376	7936	21576	21603	29551	29551					0.05754930965645144
KSTLHFSIL	9	Unmodified	_KSTLHFSIL_					0	0	0		tr|A0A7D6ZSF5|A0A7D6ZSF5_9CLOTMurR/RpiRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15645PE=4SV=1	tr|A0A7D6ZSF5|A0A7D6ZSF5_9CLOTMurR/RpiRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15645PE=4SV=1	tr|A0A7D6ZSF5|A0A7D6ZSF5_9CLOTMurR/RpiRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15645PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3037109375	2	523.305667	1044.59678	-0.69596	-0.0003642	-3.2951	-0.0017244	-3.9911	-0.0020886	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.63422	1	13788	13788		27.882	4.8398	1	130240			26377	35737	21577	21604	29552	29552					0.0762661985700106
KSTLKHSE	8	Unmodified	_KSTLKHSE_					0	0	0			REV__nc|ENSG00000005889|P17010-2|ZFX;REV__nc|ENSG00000067646|P08048-3|ZFY	REV__nc|ENSG00000067646|P08048-3|ZFY	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.9123840332031	2	465.256174	928.497795	-0.40723	-0.00018946	1.4327	0.00066658	1.0255	0.00047712	465.2567622839195	38.547	0.49168	38.547	38.301	38.793	0					22	10	3	0	0	0	0.028476	1	2215	2215		27.882	10.517	1	212060	+		26378	16406;16837	21578	21605	29553	29553					0.030685968920806772
KSTMLIKMMM	10	Unmodified	_KSTMLIKMMM_					0	0	0			REV__ENST00000379607.9_1_X:20146365-20150302:-|nuORF	REV__ENST00000379607.9_1_X:20146365-20150302:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	607.3119506835938	2	607.312408	1212.61026	1.197	0.00072693	-3.9286	-0.0023859	-2.7316	-0.0016589	607.3099558090541	89.383	2.1504	87.252	86.315	88.465	-2.1309					113	42	3	0	0	0	0.65849	1	5498	5498		35.152	2.3396	1	757940	+		26379	25160	21579	21606	29554	29554					0.012463269863928872
KSTTDKMEL	9	Unmodified	_KSTTDKMEL_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa99_classI_Rep5	1	526.766845703125	2	526.768257	1051.52196	1.7636	0.00092902	-2.7684	-0.0014583	-1.0047	-0.00052927	526.76673858604	91.987	1.0099	91.987	91.625	92.635	0					33	23	2	0	0	0	0.34132	1	9919	9919		58.23	1.5089	1	2113300	+		26380	28942;32737	21580	21607	29555	29555					-0.0017393073653693136
KSTTVHGRVP	10	Unmodified	_KSTTVHGRVP_					0	0	0		ENST00000434366.5_1_2:165561593-165697754:-|nuORF	ENST00000434366.5_1_2:165561593-165697754:-|nuORF	ENST00000434366.5_1_2:165561593-165697754:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.7861938476562	2	541.309272	1080.60399	-1.283	-0.00069452	3.252	0.0017603	1.969	0.0010658	541.3103324014675	91.932	0.15292	89.389	89.313	89.466	-2.5425					4	2	2	0	0	0	0.027033	1	7960	7960		41.427	23.165	1	18768			26381	11841	21581	21608	29556	29556					0.06691352457414723
KSTYRQLSV	9	Unmodified	_KSTYRQLSV_					0	0	0		USP24|p.S1294T|1|0.27|ENSG00000162402|chr1:55125400-55125400|A/T|missense_variant	USP24|p.S1294T|1|0.27|ENSG00000162402|chr1:55125400-55125400|A/T|missense_variant	USP24|p.S1294T|1|0.27|ENSG00000162402|chr1:55125400-55125400|A/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.7841186523438	2	541.303655	1080.59276	1.1794	0.00063839	1.4568	0.00078855	2.6361	0.0014269	541.3042623977044	89.958	0.54544	88.656	88.433	88.978	-1.302					17	10	2	0	0	0	0.027447	1	7971	7971		47.657	1.6851	1	44664			26382	36294	21582	21609	29557	29557					0.05568530363279933
KSTYRQLSV	9	Unmodified	_KSTYRQLSV_					0	0	0		USP24|p.S1294T|1|0.27|ENSG00000162402|chr1:55125400-55125400|A/T|missense_variant	USP24|p.S1294T|1|0.27|ENSG00000162402|chr1:55125400-55125400|A/T|missense_variant	USP24|p.S1294T|1|0.27|ENSG00000162402|chr1:55125400-55125400|A/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.78515625	2	541.303655	1080.59276	-0.20048	-0.00010852	2.1813	0.0011808	1.9808	0.0010722	541.3046264330352	90.832	0.60941	88.752	88.464	89.073	-2.0805					16	11	2	0	0	0	0.027446	1	5687	5687		51.193	0	1	61192			26383	36294	21582	21609	29558	29558					0.05568530363279933
KSVEKEDMA	9	Unmodified	_KSVEKEDMA_					0	0	0		nc|ENSG00000211694|A0A0A0MS01|TRGV10	nc|ENSG00000211694|A0A0A0MS01|TRGV10	nc|ENSG00000211694|A0A0A0MS01|TRGV10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.8282470703125	2	518.752607	1035.49066	-0.49051	-0.00025445	-2.498	-0.0012959	-2.9885	-0.0015503	518.7510941207531	123.65	0.49477	122.28	122	122.49	-1.3728					16	9	2	0	0	0	0.027462	1	11685	11685		31.53	14.165	1	22878			26384	15288	21583	21610	29559	29559					-0.025665037706403382
KSVEKEDMA	9	Unmodified	_KSVEKEDMA_					0	0	0		nc|ENSG00000211694|A0A0A0MS01|TRGV10	nc|ENSG00000211694|A0A0A0MS01|TRGV10	nc|ENSG00000211694|A0A0A0MS01|TRGV10	MULTI-MATCH	OvCa9_classI_Rep2	2		2	518.752607	1035.49066	0.01598	8.2897E-06	-2.8014	-0.0014532	-2.7854	-0.001445	518.7504671222198	122.62	0.64162	122.4	122.17	122.81	-0.21803	0.059005	-0.00028007	NaN	31.53	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15969			26385	15288	21583	21610							-0.025665037706403382
KSVELYFYI	9	Unmodified	_KSVELYFYI_					0	0	0			REV__ENST00000443314.5_1_2:211299010-211299184:-|nuORF	REV__ENST00000443314.5_1_2:211299010-211299184:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.2810668945312	2	581.313158	1160.61176	-0.62041	-0.00036065	-0.77731	-0.00045186	-1.3977	-0.00081252	581.3120247802303	40.844	0.3052	40.844	40.754	41.059	0					8	6	2	0	0	0	0.027462	1	2520	2520		31.53	4.4825	1	46100	+		26386	25866	21584	21611	29560	29560					0.0378806693433944
KSVKTSSA	8	Unmodified	_KSVKTSSA_					0	0	0		tr|A0A553SLU4|A0A553SLU4_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_21185PE=4SV=1	tr|A0A553SLU4|A0A553SLU4_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_21185PE=4SV=1	tr|A0A553SLU4|A0A553SLU4_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_21185PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	404.2324523925781	2	404.232168	806.449782	1.4985	0.00060574	0.40137	0.00016225	1.8999	0.00076799	404.2322157005619	134.25	0.93222	134.02	133.46	134.39	-0.22697					47	18	3	0	0	0	0.75006	1	13308	13308		16.473	2.6978	1	139150			26387	33764	21585	21612	29561	29561					0.038815229720512434
KSVLEQPKL	9	Unmodified	_KSVLEQPKL_					0	0	0			REV__DIDO1|p.E760Q|1|0.08|ENSG00000101191|chr20:62895102-62895102|C/G|missense_variant	REV__DIDO1|p.E760Q|1|0.08|ENSG00000101191|chr20:62895102-62895102|C/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.262451171875	2	521.318774	1040.623	-1.1882	-0.00061944	0.12839	6.6934E-05	-1.0598	-0.0005525	521.3184933155562	99.686	1.2286	97.361	96.951	98.179	-2.3253					41	23	3	0	0	0	0.027462	1	8859	8859		42.864	0	1	113430	+		26388	16300	21586	21613	29562	29562					0.10430889028475576
KSVLKDVQ	8	Unmodified	_KSVLKDVQ_					0	0	0		ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.77679443359375	2	458.776742	915.538931	-1.1528	-0.00052886	1.1441	0.00052487	-0.0086935	-3.9884E-06	458.7771328761946	45.555	1.2527	42.517	42.075	43.328	-3.0385					55	23	3	0	0	0	0.50747	1	2344	2344		76.774	9.8122	1	304260			26389	8305	21587	21614	29563	29563					0.07778357931567825
KSVLKDVQ	8	Unmodified	_KSVLKDVQ_					0	0	0		ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	458.776742	915.538931	0.47771	0.00021916	-0.4525	-0.0002076	0.025211	1.1566E-05	458.77640324029187	45.347	1.0509	42.637	42.298	43.349	-2.7097	0.060078	-0.00070714	NaN	76.774	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71348			26390	8305	21587	21614							0.07778357931567825
KSVLLDKI	8	Unmodified	_KSVLLDKI_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238252944-238263658:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	458.29803466796875	2	458.29731	914.580068	0.0031602	1.4483E-06	-0.084774	-3.8852E-05	-0.081614	-3.7403E-05	458.29719173066195	69.084	1.6349	69.084	68.774	70.408	0					88	39	4	0	0	0	0.17193	1	6564	6564		129.42	13.927	1	12019000			26391	6293	21588	21615	29564	29564					0.11936118971038923
KSVLVKQTI	9	Unmodified	_KSVLVKQTI_					0	0	0		nc|ENSG00000179950|Q9UHX1-4|PUF60;nc|ENSG00000179950|Q9UHX1-6|PUF60;nc|ENSG00000179950|Q9UHX1-3|PUF60;nc|ENSG00000179950|Q9UHX1-5|PUF60;nc|ENSG00000179950|Q9UHX1-2|PUF60;ENSG00000179950|ENST00000526683|PUF60;SCRIB-PUF60|2|fusion;SCRIB-PUF60|1|fusion;ENST00000531995.1_1_8:144902796-144903907:-|nuORF;ENST00000532127.5_1_8:144902796-144911473:-|nuORF;ENST00000526151.5_1_8:144903610-144911473:-|nuORF	nc|ENSG00000179950|Q9UHX1-4|PUF60	nc|ENSG00000179950|Q9UHX1-4|PUF60	MULTI-MSMS	OvCa99_classI_Rep5	1	508.3299255371094	2	508.329142	1014.64373	-0.44807	-0.00022777	-0.032736	-1.6641E-05	-0.4808	-0.00024441	508.3290266162964	50.752	1.0354	50.752	50.509	51.544	0					55	23	4	0	0	0	0.012992	1	3864	3864		159.28	17.756	1	5697100			26392	7850	21589	21616	29565	29565					0.1369947940813745
KSVRKPKFK	9	Unmodified	_KSVRKPKFK_					0	0	0		nc|ENSG00000148600|Q96JP9-2|CDHR1	nc|ENSG00000148600|Q96JP9-2|CDHR1	nc|ENSG00000148600|Q96JP9-2|CDHR1	MULTI-SECPEP	OvCa9_classI_Rep3	3	559.3338623046875	2	559.36385	1116.71315	0.059428	3.3242E-05	1.8064	0.0010104	1.8658	0.0010437	559.364077085884	105.95	0.26173	104.61	104.4	104.67	-1.3482					7	4	2	0	0	0	0.027462	1	7456	7456		34.173	9.9698	1	9260			26393	15082	21590	21617	29566	29566					0.1594598314754876
KSVSFRLFG	9	Unmodified	_KSVSFRLFG_					0	0	0		ENSG00000127989|ENST00000351870|MTERF1	ENSG00000127989|ENST00000351870|MTERF1	ENSG00000127989|ENST00000351870|MTERF1	MSMS	OvCa99_classI_Rep5	1	520.7997436523438	2	520.798009	1039.58147	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.15	1	130.15	129.65	130.65	0								0	0	0	0.17671	1	15101	15101		39.253	7.298	1				26394	3858	21591	21618	29567	29567					0.06325753059809358
KSVTRGFIDI	10	Unmodified	_KSVTRGFIDI_					0	0	0			REV__nc|ENSG00000134884|Q9NWB6-2|ARGLU1	REV__nc|ENSG00000134884|Q9NWB6-2|ARGLU1	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.297607421875	2	568.327131	1134.63971	-0.087092	-4.9497E-05	0.27779	0.00015787	0.19069	0.00010838	568.3270986225699	62.016	0.5923	62.016	61.743	62.335	0					24	13	2	0	0	0	0.026867	1	5480	5480		42.864	5.7052	1	1157900	+		26395	28865	21592	21619	29568	29568					0.07777389914440391
KSVTSKGT	8	Unmodified	_KSVTSKGT_					0	0	0			REV__tr|A0A7D6VNQ2|A0A7D6VNQ2_9CLOTDephospho-CoAkinaseOS=ClostridiumintestinaleOX=36845GN=coaEPE=3SV=1	REV__tr|A0A7D6VNQ2|A0A7D6VNQ2_9CLOTDephospho-CoAkinaseOS=ClostridiumintestinaleOX=36845GN=coaEPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	404.2328186035156	2	404.232168	806.449782	1.3505	0.00054594	0.46264	0.00018701	1.8132	0.00073295	404.23224424215823	134.98	1.1763	134.75	134.34	135.52	-0.22696					59	23	3	0	0	0	0.75723	1	13384	13384		23.042	0	1	117390	+		26396	31200	21593	21620	29569	29569					0.03881522972062612
KSVTWYLLA	9	Unmodified	_KSVTWYLLA_					0	0	0		ENSG00000174123|ENST00000308973|TLR10	ENSG00000174123|ENST00000308973|TLR10	ENSG00000174123|ENST00000308973|TLR10	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.7841796875	2	540.808042	1079.60153	0.98585	0.00053316	0.12869	6.9597E-05	1.1145	0.00060276	541.310519266214	90.598	0.69362	89.296	88.929	89.622	-1.302					30	13	3	0	0	0	0.027418	1	7986	7986		79.451	31.794	1	21851			26397	7437	21594	21621	29570	29570					0.06491503999768611
KSVVFSCKP	9	Unmodified	_KSVVFSCKP_					0	0	0			REV__ENST00000528375.1_1_11:61905314-61909007:+|nuORF	REV__ENST00000528375.1_1_11:61905314-61909007:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	497.7728271484375	2	497.773145	993.531738	0.65036	0.00032373	-2.1024	-0.0010465	-1.452	-0.00072278	497.77204137274555	158.87	0.72887	158.87	158.56	159.28	0					20	14	2	0	0	0	0.55011	1	18624	18624		37.812	0.65241	1	137350	+		26398	27167	21595	21622	29571	29571					0.03471302059483605
KSWFSSKL	8	Unmodified	_KSWFSSKL_					0	0	0			REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10	REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-MSMS	OvCa99_classI_Rep5	1	491.7695617675781	2	491.77146	981.528367	-1.1169	-0.00054925	-3.2375	-0.0015921	-4.3543	-0.0021413	491.769692686762	36.97	0.68706	36.97	36.751	37.438	0					30	14	4	0	0	0	0.69491	1	1994	1994		44.377	6.5657	1	244370	+		26399	20373	21596	21623	29572	29572					0.03686375277152365
KSWLIYVV	8	Unmodified	_KSWLIYVV_					0	0	0		nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;nc|ENSG00000198089|A8K8P3-5|SFI1;ENST00000382162.7_1_22:31904270-32000328:+|nuORF	nc|ENSG00000198089|A8K8P3-10|SFI1	nc|ENSG00000198089|A8K8P3-10|SFI1	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.7825622558594	2	504.299853	1006.58515	1.2085	0.00060946	1.894	0.00095514	3.1025	0.0015646	504.3028200168554	74.593	0.43919	74.593	74.441	74.88	0					15	10	2	0	0	0	0.028476	1	7362	7362		40.573	17.53	1	177110			26400	8783	21597	21624	29573	29573					0.08212422833673827
KSWNNQPLS	9	Unmodified	_KSWNNQPLS_					0	0	0		ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.619384765625	2	537.272355	1072.53016	-0.21682	-0.00011649	2.8141	0.0015119	2.5973	0.0013954	537.2735798510475	60.232	0.80914	60.232	59.879	60.688	0					31	19	2	0	0	0	0.027462	1	5267	5267		4.3388	0	1	319000			26401	7737	21598	21625	29574	29574					-0.003206157049135072
KSWQLLDV	8	Unmodified	_KSWQLLDV_					0	0	0			REV__ENST00000459872.1_1_6:10557103-10619499:+|nuORF	REV__ENST00000459872.1_1_6:10557103-10619499:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	494.777099609375	2	494.776742	987.538931	-1.6043	-0.00079376	-3.2019	-0.0015842	-4.8062	-0.002378	494.77511638470475	34.991	0.4935	32.281	32.109	32.602	-2.7097					25	9	4	0	0	0	0.6345	1	1375	1375		56.721	9.0637	1	92760	+		26402	26068	21599	21626	29575	29575					0.04466357931573839
KSWTKSFKR	9	Unmodified	_KSWTKSFKR_					0	0	0			REV__ENST00000430010.1_1_2:55451599-55452256:+|nuORF	REV__ENST00000430010.1_1_2:55451599-55452256:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	584.333740234375	2	584.33529	1166.65603	-1.2681	-0.00074098	-2.2731	-0.0013283	-3.5412	-0.0020692	584.3339090960189	33.507	1.6858	30.797	30.571	32.257	-2.7097					89	33	4	0	0	0	0.69123	1	1254	1254		20.947	0	1	807420	+		26403	25705	21600	21627	29576	29576					0.07936515871188021
KSYAGFLTV	9	Unmodified	_KSYAGFLTV_					0	0	0		CPVL|p.V418Ffs*24|1|0.38|ENSG00000106066|chr7:29030646-29030646|T/-|frameshift_variant;ENSG00000106066|ENST00000265394|CPVL	CPVL|p.V418Ffs*24|1|0.38|ENSG00000106066|chr7:29030646-29030646|T/-|frameshift_variant	CPVL|p.V418Ffs*24|1|0.38|ENSG00000106066|chr7:29030646-29030646|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.2708435058594	2	493.271293	984.528032	-0.48362	-0.00023856	-2.1438	-0.0010575	-2.6274	-0.001296	493.2700862357715	101.11	1.1654	98.846	98.652	99.817	-2.2665					44	23	2	0	0	0	0.1944	1	9065	9065		77.318	3.0625	1	219060			26404	678	21601	21628	29577	29577					0.03514955557284338
KSYFDNQLN	9	Unmodified	_KSYFDNQLN_					0	0	0		tr|A0A7D6VT51|A0A7D6VT51_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07760PE=3SV=1	tr|A0A7D6VT51|A0A7D6VT51_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07760PE=3SV=1	tr|A0A7D6VT51|A0A7D6VT51_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07760PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.8217163085938	2	564.769645	1127.52474	2.2003	0.0012427	3.2208	0.001819	5.4211	0.0030617	564.7707693431202	120.16	0.4866	120.16	119.79	120.27	0					22	10	3	0	0	0	0.027462	1	13795	13795		19.104	0	1	328020			26405	35086	21602	21629	29578	29578					-0.03392339287370305
KSYKGKAF	8	Unmodified	_KSYKGKAF_					0	0	0			REV__tr|A0A7D7ADL5|A0A7D7ADL5_9CLOTEndonucleaseMutS2OS=ClostridiumintestinaleOX=36845GN=HZF06_23300PE=4SV=1	REV__tr|A0A7D7ADL5|A0A7D7ADL5_9CLOTEndonucleaseMutS2OS=ClostridiumintestinaleOX=36845GN=HZF06_23300PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.9123840332031	2	464.766178	927.517802	-0.4177	-0.00019413	-3.6726	-0.0017069	-4.0903	-0.001901	464.76442277816085	38.548	0.35728	38.548	38.348	38.705	0					18	7	3	0	0	0	0.028476	1	2215	2215		18.324	0	1	440210	+		26406	32696	21603	21630	29579	29579					0.051143926227155134
KTAAFALPVL	10	Unmodified	_KTAAFALPVL_					0	0	0		nc|ENSG00000124228|Q96GQ7|DDX27;DDX27|p.E703Dfs*18|1|0.04|ENSG00000124228|chr20:49242105-49242106|-/TTTGCAGCCCGTGGCTTCCTGTGTT|frameshift_variant;ENSG00000124228|ENST00000618172|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF;DDX27|p.C321Vfs*21|1|0.11|ENSG00000124228|chr20:49228875-49228876|-/G|frameshift_variant	nc|ENSG00000124228|Q96GQ7|DDX27	nc|ENSG00000124228|Q96GQ7|DDX27	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.7461547851562	2	515.81841	1029.62227	-0.28519	-0.0001471	-0.34134	-0.00017607	-0.62652	-0.00032317	515.8181194590187	96.13	0.80085	94.301	94.027	94.827	-1.8286					24	15	2	0	0	0	0.026635	1	6289	6289		47.657	1.6851	1	43264			26407	14999	21604	21631	29580	29580					0.10864094379394373
KTAAFALPVL	10	Unmodified	_KTAAFALPVL_					0	0	0		nc|ENSG00000124228|Q96GQ7|DDX27;DDX27|p.E703Dfs*18|1|0.04|ENSG00000124228|chr20:49242105-49242106|-/TTTGCAGCCCGTGGCTTCCTGTGTT|frameshift_variant;ENSG00000124228|ENST00000618172|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF;DDX27|p.C321Vfs*21|1|0.11|ENSG00000124228|chr20:49228875-49228876|-/G|frameshift_variant	nc|ENSG00000124228|Q96GQ7|DDX27	nc|ENSG00000124228|Q96GQ7|DDX27	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.81841	1029.62227	-0.064685	-3.3366E-05	-0.15372	-7.9293E-05	-0.21841	-0.00011266	515.818320593005	95.206	0.89092	94.178	93.923	94.813	-1.0281	-0.061787	5.8818E-05	NaN	24.519	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42642			26408	14999	21604	21631							0.10864094379394373
KTAATKRT	8	Unmodified	_KTAATKRT_					0	0	0			REV__tr|A0A553SM52|A0A553SM52_NIACILactateutilizationproteinCOS=NialliacirculansOX=1397GN=lutCPE=3SV=1	REV__tr|A0A553SM52|A0A553SM52_NIACILactateutilizationproteinCOS=NialliacirculansOX=1397GN=lutCPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	438.7337951660156	2	438.766709	875.518865	1.1969	0.00052516	3.8845	0.0017044	5.0814	0.0022295	438.76827896303297	70.794	0.38921	70.794	70.641	71.031	0					12	9	2	0	0	0	0.028476	1	6810	6810		24.519	10.744	1	226380	+		26409	30297	21605	21632	29581	29581					0.07612606991608573
KTAEFLSKLNT	11	Unmodified	_KTAEFLSKLNT_					0	0	0		ENSG00000133106|ENST00000313624|EPSTI1;nc|ENSG00000133106|Q96J88|EPSTI1;nc|ENSG00000133106|Q96J88-3|EPSTI1;ENST00000535677.5_1_13:43491732-43537592:-|nuORF;NSFL1C-EPSTI1|2|fusion;NSFL1C-EPSTI1|1|fusion	ENSG00000133106|ENST00000313624|EPSTI1;NSFL1C-EPSTI1|2|fusion	NSFL1C-EPSTI1|2|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	417.9170837402344	3	417.902961	1250.68705	-1.1552	-0.00048277	2.5568	0.0010685	1.4015	0.0005857	417.90338040507305	54.279	0.25577	51.032	50.927	51.183	-3.2474					6	4	2	0	0	0	0.025943	1	3351	3351		29.245	3.3533	1	6394.9			26410	4199;15440	21606	21633	29582	29582					0.0717362439477256
KTAEFLSKLNT	11	Unmodified	_KTAEFLSKLNT_					0	0	0		ENSG00000133106|ENST00000313624|EPSTI1;nc|ENSG00000133106|Q96J88|EPSTI1;nc|ENSG00000133106|Q96J88-3|EPSTI1;ENST00000535677.5_1_13:43491732-43537592:-|nuORF;NSFL1C-EPSTI1|2|fusion;NSFL1C-EPSTI1|1|fusion	ENSG00000133106|ENST00000313624|EPSTI1;NSFL1C-EPSTI1|2|fusion	NSFL1C-EPSTI1|2|fusion	MULTI-MATCH	OvCa99_classI_Rep5	1		3	417.902961	1250.68705	0.1513	6.323E-05	-3.3987	-0.0014203	-3.2474	-0.0013571	418.23629362930365	50.947	0.52245	50.947	50.685	51.207	0	-0.042607	-0.0030085	NaN	23.514	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	328260			26411	4199;15440	21606	21633							0.0717362439477256
KTAFSKAW	8	Unmodified	_KTAFSKAW_					0	0	0		ENST00000368576.7_1_6:116979985-116981934:-|nuORF	ENST00000368576.7_1_6:116979985-116981934:-|nuORF	ENST00000368576.7_1_6:116979985-116981934:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	469.75775146484375	2	469.758352	937.502152	-0.25415	-0.00011939	-3.5484	-0.0016669	-3.8026	-0.0017863	469.75632826583853	54.123	1.241	54.123	53.564	54.805	0					58	29	4	0	0	0	0.6962	1	4338	4338		44.117	4.864	1	3869200			26412	10876	21607	21634	29583	29583					0.030901061056624712
KTAFVIIMI	9	Unmodified	_KTAFVIIMI_					0	0	0		ENST00000506359.1_1_4:73012322-73013526:+|nuORF;ENSG00000056291|ENST00000308744|NPFFR2;nc|ENSG00000056291|Q9Y5X5-3|NPFFR2;nc|ENSG00000056291|Q9Y5X5|NPFFR2	ENST00000506359.1_1_4:73012322-73013526:+|nuORF	ENST00000506359.1_1_4:73012322-73013526:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	518.31689453125	2	518.317189	1034.61982	0.28775	0.00014915	2.799	0.0014508	3.0867	0.0015999	518.3186116061291	93.146	2.9926	91.978	91.235	94.227	-1.168					136	58	5	0	0	0	0.40667	1	8313	8313		51.335	1.3109	1	2212200			26413	1228	21608	21635	29584	29584					0.10389922650119843
KTAKAPKTK	9	Unmodified	_KTAKAPKTK_					0	0	0			REV__tr|A0A7D6VSD6|A0A7D6VSD6_9CLOTInorganicphosphatetransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_05310PE=4SV=1	REV__tr|A0A7D6VSD6|A0A7D6VSD6_9CLOTInorganicphosphatetransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_05310PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.8150329589844	2	486.813659	971.612765	0.0092768	4.5161E-06	-0.57834	-0.00028154	-0.56906	-0.00027703	486.81330722283235	57.818	1.9114	54.473	54.138	56.049	-3.3449					99	37	4	0	0	0	0.10502	1	3764	3764		95.815	16.103	1	1449700	+		26414	31490	21609	21636	29585	29585					0.12582326093900065
KTAKFIGI	8	Unmodified	_KTAKFIGI_					0	0	0		tr|A0A553SFF1|A0A553SFF1_NIACIGluconokinaseOS=NialliacirculansOX=1397GN=gntKPE=3SV=1	tr|A0A553SFF1|A0A553SFF1_NIACIGluconokinaseOS=NialliacirculansOX=1397GN=gntKPE=3SV=1	tr|A0A553SFF1|A0A553SFF1_NIACIGluconokinaseOS=NialliacirculansOX=1397GN=gntKPE=3SV=1	MSMS	OvCa9_classI_Rep2	2	439.2781066894531	2	439.278921	876.543289	NaN	NaN	NaN	NaN	NaN	NaN	NaN	160.88	1	160.66	160.16	161.16	-0.22696								0	0	0	0.30129	1	16374	16374		18.324	3.6603	1				26415	33032	21610	21637	29586	29586					0.1000786714514561
KTAKKVAQN	9	Unmodified	_KTAKKVAQN_					0	0	0		tr|A0A553SKH9|A0A553SKH9_NIACILatecompetenceproteinComEROS=NialliacirculansOX=1397GN=CEQ21_18875PE=3SV=1	tr|A0A553SKH9|A0A553SKH9_NIACILatecompetenceproteinComEROS=NialliacirculansOX=1397GN=CEQ21_18875PE=3SV=1	tr|A0A553SKH9|A0A553SKH9_NIACILatecompetenceproteinComEROS=NialliacirculansOX=1397GN=CEQ21_18875PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	494.302001953125	2	494.300916	986.587279	1.1771	0.00058186	2.3792	0.0011761	3.5564	0.0017579	494.3019240355176	126.28	1.1552	125.2	124.86	126.02	-1.0715					43	21	3	0	0	0	0.53483	1	9864	9864		39.253	6.4404	1	106780			26416	33617	21611	21638	29587	29587					0.09344851571472645
KTALMFTVT	9	Unmodified	_KTALMFTVT_					0	0	0			REV__tr|A0A553SKG4|A0A553SKG4_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_18625PE=4SV=1	REV__tr|A0A553SKG4|A0A553SKG4_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_18625PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.3182067871094	2	506.280803	1010.54705	-0.65595	-0.00033209	-0.41382	-0.00020951	-1.0698	-0.0005416	506.2822082942209	59.381	0.4206	56.601	56.399	56.82	-2.7801					12	7	2	0	0	0	0.027462	1	4325	4325		37.812	4.9991	1	13430	+		26417	30122	21612	21639	29588	29588					0.042201688566933626
KTANDFVF	8	Unmodified	_KTANDFVF_					0	0	0		nc|ENSG00000172869|Q9Y485|DMXL1;ENSG00000172869|ENST00000539542|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-SECPEP	OvCa9_classI_Rep2	2	470.2666320800781	2	471.239993	940.465432	0.51595	0.00024313	-4.4262	-0.0020858	-3.9103	-0.0018427	471.2374639682525	43.309	0.59428	40.599	40.41	41.005	-2.7097					13	11	2	0	0	0	0.028476	1	2437	2437		30.504	1.3541	1	20212			26418	7324	21613	21640	29589	29589					-0.007181905109064246
KTAPHLQDYTV	11	Unmodified	_KTAPHLQDYTV_					0	0	0		nc|ENSG00000239961|P59901-2|LILRA4;ENSG00000239961|ENST00000291759|LILRA4	nc|ENSG00000239961|P59901-2|LILRA4	nc|ENSG00000239961|P59901-2|LILRA4	MULTI-MSMS	OvCa9_classI_Rep4_	4	424.8900146484375	3	424.890944	1271.651	-0.11144	-4.7351E-05	-2.4509	-0.0010414	-2.5623	-0.0010887	424.89005057309436	20.59	2.4808	19.252	18.851	21.331	-1.3386					183	49	7	0	0	0	0.72464	1	189	189		20.315	1.0523	1	5179600			26419	9333	21614	21641	29590	29590					0.02604167217896247
KTAQLFALFRA	11	Unmodified	_KTAQLFALFRA_					0	0	0			REV__nc|ENSG00000138741|Q13507-3|TRPC3	REV__nc|ENSG00000138741|Q13507-3|TRPC3	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3704833984375	2	633.371872	1264.72919	-4.5141	-0.0028591	0.26314	0.00016666	-4.251	-0.0026925	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.72466	1	15745	15745		19.997	3.5236	1	369460	+		26420	19566	21615	21642	29591	29591					0.10741644593804267
KTASLKYLLN	10	Unmodified	_KTASLKYLLN_					0	0	0			REV__nc|ENSG00000124721|Q96JB1-2|DNAH8	REV__nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8428344726562	2	575.845156	1149.67576	-1.5734	-0.00090602	-1.7064	-0.00098265	-3.2798	-0.0018887	575.8439449675558	145.55	4.7888	144.12	142.78	147.57	-1.4357					360	93	6	0	0	0	0.75313	1	14169	14169		24.519	0.99649	1	565210	+		26421	18702	21616	21643	29592	29592					0.10690847091314026
KTASLSSVPR	10	Unmodified	_KTASLSSVPR_					0	0	0			REV__ENST00000587486.6_1_19:13050259-13050340:+|nuORF	REV__ENST00000587486.6_1_19:13050259-13050340:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	523.303466796875	2	523.303655	1044.59276	-0.69596	-0.0003642	0.54848	0.00028702	-0.14748	-7.7179E-05	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.70152	1	13971	13971		30.318	1.1477	1	130240	+		26422	27876	21617	21644	29593	29593					0.07224530363305348
KTDEGHPFK	9	Unmodified	_KTDEGHPFK_					0	0	0		ENSG00000139970|ENST00000267484|RTN1;ENST00000474911.5_1_14:60063465-60074250:-|nuORF;nc|ENSG00000139970|Q16799-3|RTN1;nc|ENSG00000139970|Q16799-2|RTN1;ENST00000432103.6_1_14:60063465-60194426:-|nuORF	ENSG00000139970|ENST00000267484|RTN1	ENSG00000139970|ENST00000267484|RTN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.7723388671875	2	529.766906	1057.51926	2.4267	0.0012856	-0.51403	-0.00027231	1.9127	0.0010133	529.7668488371553	96.49	1.0101	96.49	96.082	97.093	0					52	23	4	0	0	0	0.027462	1	10514	10514		20.947	0	1	2485000			26423	4813	21618	21645	29594	29594					-0.00720018079186957
KTDLSNATQL	10	Unmodified	_KTDLSNATQL_					0	0	0		tr|A0A553SJI8|A0A553SJI8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_16860PE=4SV=1	tr|A0A553SJI8|A0A553SJI8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_16860PE=4SV=1	tr|A0A553SJI8|A0A553SJI8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_16860PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	545.7903442382812	2	545.790578	1089.5666	-0.16024	-8.7456E-05	-0.69156	-0.00037744	-0.85179	-0.0004649	545.7902430296992	30.656	0.83107	30.656	30.433	31.264	0					59	16	6	0	0	0	0.30325	1	1232	1232		80.455	14.989	1	8708400			26424	33508	21619	21646	29595	29595					0.0254021640114388
KTEASKKILE	10	Unmodified	_KTEASKKILE_					0	0	0		nc|ENSG00000174527|Q8N1T3-3|MYO1H;nc|ENSG00000174527|Q8N1T3|MYO1H;ENSG00000174527|ENST00000310903|MYO1H	nc|ENSG00000174527|Q8N1T3-3|MYO1H	nc|ENSG00000174527|Q8N1T3-3|MYO1H	MULTI-MSMS	OvCa99_classI_Rep5	1	573.8452758789062	2	573.840071	1145.66559	1.1202	0.00064283	2.1127	0.0012123	3.2329	0.0018552	573.841168785433	79.098	0.88384	79.098	78.625	79.509	0					55	21	4	0	0	0	0.47142	1	8028	8028		58.23	3.4536	1	6020300			26425	7472	21620	21647	29596	29596					0.0985823936603083
KTEDKVRVM	9	Oxidation (M)	_KTEDKVRVM(Oxidation (M))_		KTEDKVRVM(1)		KTEDKVRVM(72)	0	0	1		ENSG00000196954|ENST00000444739|CASP4;nc|ENSG00000196954|P49662-5|CASP4;ENST00000531546.1_1_11:104822523-104839261:-|nuORF;nc|ENSG00000196954|P49662-4|CASP4;ENST00000524843.5_1_11:104820261-104839261:-|nuORF;ENST00000529183.5_1_11:104820451-104839261:-|nuORF;ENST00000531333.5_1_11:104821760-104839261:-|nuORF;nc|ENSG00000196954|P49662-3|CASP4;ENST00000533730.5_1_11:104822704-104839261:-|nuORF	ENSG00000196954|ENST00000444739|CASP4	ENSG00000196954|ENST00000444739|CASP4	MULTI-MSMS	OvCa9_classI_Rep2	2	561.3026733398438	2	561.302798	1120.59104	0.12113	6.7993E-05	-0.025704	-1.4428E-05	0.09543	5.3565E-05	561.3024934414574	32.135	1.0883	29.425	29.184	30.272	-2.7097					48	21	4	0	0	0	0.22621	2	1043	1035;1043		71.877	15.156	1	95225			26426	8664	21621	21648	29597;29598	29598		260			0.03557153283009029
KTEKSSLF	8	Unmodified	_KTEKSSLF_					0	0	0			REV__ENSG00000155085|ENST00000424296|AK9	REV__ENSG00000155085|ENST00000424296|AK9	MULTI-SECPEP	OvCa99_classI_Rep5	1	469.7688903808594	2	470.260925	938.507297	-0.72546	-0.00034115	0.9048	0.00042549	0.17934	8.4339E-05	470.2611203598938	37.232	0.37124	37.232	37.114	37.485	0					17	7	3	0	0	0	0.028476	1	2020	2020		10.265	0	1	148530	+		26427	20411	21622	21649	29599	29599					0.0355836517762782
KTELYTKF	8	Unmodified	_KTELYTKF_					0	0	0			REV__ARMC9-PSMD1|2|fusion	REV__ARMC9-PSMD1|2|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	516.2847290039062	2	515.2844	1028.55425	0.55826	0.00028766	1.357	0.00069922	1.9152	0.00098688	515.7859972463107	81.958	0.78038	80.309	79.919	80.7	-1.6485					22	14	2	0	0	0	0.028476	1	7015	7015		20.947	1.587	1	31696	+		26428	15663	21623	21650	29600	29600					0.04111224728740126
KTERINDDNV	10	Unmodified	_KTERINDDNV_					0	0	0			REV__nc|ENSG00000138347|Q86TC9-2|MYPN	REV__nc|ENSG00000138347|Q86TC9-2|MYPN	MULTI-MSMS	OvCa99_classI_Rep5	1	602.3009033203125	2	602.301841	1202.58913	2.7643	0.0016649	-4.4068	-0.0026542	-1.6425	-0.0009893	602.2991058656592	75.135	1.1545	75.135	74.841	75.996	0					59	28	3	0	0	0	0.52162	1	7474	7474		51.528	7.1506	1	6866900	+		26429	19531	21624	21651	29601	29601					-0.004061842012561101
KTESNGKAF	9	Unmodified	_KTESNGKAF_					0	0	0		nc|ENSG00000138336|Q8NFU7-2|TET1;ENSG00000138336|ENST00000373644|TET1;TET1|p.K1722Rfs*51|1|0.02|ENSG00000138336|chr10:68686467-68686468|-/GGCTTTCTCC|frameshift_variant	nc|ENSG00000138336|Q8NFU7-2|TET1	nc|ENSG00000138336|Q8NFU7-2|TET1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.7830810546875	2	491.253631	980.49271	-0.97764	-0.00048027	-0.33302	-0.0001636	-1.3107	-0.00064387	491.25370266037	72.35	1.2644	68.954	68.52	69.785	-3.3961					52	25	3	0	0	0	0.027462	1	5521	5521		29.15	0	1	128060			26430	4674	21625	21652	29602	29602					0.0016829302946916869
KTETKTVSAPG	11	Unmodified	_KTETKTVSAPG_					0	0	0		tr|A0A7D6VP11|A0A7D6VP11_9CLOTFlagellarM-ringproteinOS=ClostridiumintestinaleOX=36845GN=fliFPE=3SV=1	tr|A0A7D6VP11|A0A7D6VP11_9CLOTFlagellarM-ringproteinOS=ClostridiumintestinaleOX=36845GN=fliFPE=3SV=1	tr|A0A7D6VP11|A0A7D6VP11_9CLOTFlagellarM-ringproteinOS=ClostridiumintestinaleOX=36845GN=fliFPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	560.8043212890625	2	559.806228	1117.5979	1.6144	0.00090376	2.3358	0.0013076	3.9502	0.0022114	559.8080511471721	91.323	0.95314	90.087	89.689	90.642	-1.2355					25	17	2	0	0	0	0.025759	1	8141	8141		28.081	7.2443	1	66893			26431	34743	21626	21653	29603	29603					0.04380789435231236
KTETKTVSAPG	11	Unmodified	_KTETKTVSAPG_					0	0	0		tr|A0A7D6VP11|A0A7D6VP11_9CLOTFlagellarM-ringproteinOS=ClostridiumintestinaleOX=36845GN=fliFPE=3SV=1	tr|A0A7D6VP11|A0A7D6VP11_9CLOTFlagellarM-ringproteinOS=ClostridiumintestinaleOX=36845GN=fliFPE=3SV=1	tr|A0A7D6VP11|A0A7D6VP11_9CLOTFlagellarM-ringproteinOS=ClostridiumintestinaleOX=36845GN=fliFPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	559.806228	1117.5979	-1.4511	-0.00081235	5.8102	0.0032526	4.3591	0.0024403	559.8088394405165	92.077	0.64088	90.052	89.584	90.225	-2.0241	0.013739	0.00075295	NaN	10.104	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83220			26432	34743	21626	21653							0.04380789435231236
KTEVATQEKES	11	Unmodified	_KTEVATQEKES_					0	0	0			REV__ENST00000475010.5_1_7:140155450-140179030:-|nuORF	REV__ENST00000475010.5_1_7:140155450-140179030:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	624.3513793945312	2	625.317157	1248.61976	1.5638	0.00097786	-0.43162	-0.0002699	1.1322	0.00070796	625.316211494987	126.94	0.62382	126.94	126.61	127.23	0					24	13	2	0	0	0	0.025551	1	14708	14708		30.569	0	1	76804	+		26433	26351	21627	21654	29604	29604					0.005395493931473538
KTEVMPLAL	9	Unmodified	_KTEVMPLAL_					0	0	0		ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	MULTI-MSMS	OvCa99_classI_Rep5	1	501.29248046875	2	501.288628	1000.5627	-0.0020585	-1.0319E-06	3.7923	0.0019011	3.7903	0.0019	501.29049593732833	64.666	0.9796	64.666	64.21	65.19	0					58	23	5	0	0	0	0.44294	1	5874	5874		47.916	1.9434	1	5023000			26434	1630	21628	21655	29605	29605					0.06244455373712299
KTEWEMHV	8	Unmodified	_KTEWEMHV_					0	0	0			REV__tr|A0A553SM01|A0A553SM01_NIACIAntibioticbiosynthesismonooxygenaseOS=NialliacirculansOX=1397GN=CEQ21_21650PE=4SV=1	REV__tr|A0A553SM01|A0A553SM01_NIACIAntibioticbiosynthesismonooxygenaseOS=NialliacirculansOX=1397GN=CEQ21_21650PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.7883911132812	2	530.250034	1058.48552	2.0575	0.001091	0.66044	0.0003502	2.7179	0.0014412	530.2503684682239	85.148	0.49294	85.148	84.841	85.334	0					15	11	2	0	0	0	0.028476	1	8933	8933		18.324	4.1873	1	370710	+		26435	30283	21629	21656	29606	29606					-0.04138762842603683
KTFCQKSDL	9	Unmodified	_KTFCQKSDL_					0	0	0		nc|ENSG00000189180|Q06730|ZNF33A;ENSG00000189180|ENST00000432900|ZNF33A;nc|ENSG00000189180|Q06730-3|ZNF33A	nc|ENSG00000189180|Q06730|ZNF33A	nc|ENSG00000189180|Q06730|ZNF33A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.7254638671875	2	535.270967	1068.52738	-1.6303	-0.00087263	0.86251	0.00046168	-0.76775	-0.00041096	535.271563105933	66.417	1.3193	62.927	62.321	63.64	-3.4902					37	26	2	0	0	0	0.027462	1	4795	4795		27.882	4.8398	1	92899			26436	8542	21630	21657	29607	29607					-0.004142071540854886
KTFEEFPLK	9	Unmodified	_KTFEEFPLK_					0	0	0			REV__tr|A0A7D6VSS5|A0A7D6VSS5_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17955PE=4SV=1	REV__tr|A0A7D6VSS5|A0A7D6VSS5_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17955PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	569.8082885742188	2	569.810782	1137.60701	-0.10687	-6.0896E-05	-4.1486	-0.0023639	-4.2554	-0.0024248	569.8081212691537	48.223	1.3941	45.115	44.787	46.181	-3.1077					61	26	3	0	0	0	0.44248	1	2669	2669		47.96	1.5027	1	643110	+		26437	31533	21631	21658	29608	29608					0.04371182791555839
KTFEGNLTTK	10	Unmodified	_KTFEGNLTTK_					0	0	0		PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant;PRPF8|p.Q2065Hfs*8|1|0.04|ENSG00000174231|chr17:1653809-1653810|-/G|frameshift_variant;ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.Q1835Afs*4|1|0.07|ENSG00000174231|chr17:1658255-1658256|-/C|frameshift_variant;PITPNA-PRPF8|1|fusion	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant;PITPNA-PRPF8|1|fusion	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	569.8095703125	2	569.808771	1137.60299	-0.10687	-6.0896E-05	-0.61868	-0.00035253	-0.72555	-0.00041343	569.8081212691537	48.223	1.3941	45.115	44.787	46.181	-3.1077					61	26	3	0	0	0	0.073842	1	2641	2641		120.31	10.828	1	643110			26438	7449;15503	21632	21659	29609	29609					0.039690932978373894
KTFEGNLTTK	10	Unmodified	_KTFEGNLTTK_					0	0	0		PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant;PRPF8|p.Q2065Hfs*8|1|0.04|ENSG00000174231|chr17:1653809-1653810|-/G|frameshift_variant;ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.Q1835Afs*4|1|0.07|ENSG00000174231|chr17:1658255-1658256|-/C|frameshift_variant;PITPNA-PRPF8|1|fusion	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant;PITPNA-PRPF8|1|fusion	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	569.808771	1137.60299	-1.1862	-0.00067589	0.44632	0.00025432	-0.73985	-0.00042157	569.8088015615606	47.867	1.0435	45.157	44.836	45.879	-2.7097	0.020928	0.0006646	NaN	120.31	42	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154260			26439	7449;15503	21632	21659							0.039690932978373894
KTFFKDIDI	9	Unmodified	_KTFFKDIDI_					0	0	0			REV__tr|A0A7D6ZWZ1|A0A7D6ZWZ1_9CLOTAlanyl-tRNAeditingproteinAlaX-LOS=ClostridiumintestinaleOX=36845GN=HZF06_21065PE=4SV=1	REV__tr|A0A7D6ZWZ1|A0A7D6ZWZ1_9CLOTAlanyl-tRNAeditingproteinAlaX-LOS=ClostridiumintestinaleOX=36845GN=HZF06_21065PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	564.8069458007812	2	563.810782	1125.60701	-1.0139	-0.00057167	1.014	0.00057173	0.00010368	5.8457E-08	564.3132317843022	91.086	0.96279	89.062	88.52	89.483	-2.0241					25	18	2	0	0	0	0.027462	1	5642	5642		20.947	6.8098	1	30942	+		26440	32306	21633	21660	29610	29610					0.04923182791549152
KTFKKKDAEVQ	11	Unmodified	_KTFKKKDAEVQ_					0	0	0		tr|A0A553SQ09|A0A553SQ09_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15360PE=4SV=1	tr|A0A553SQ09|A0A553SQ09_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15360PE=4SV=1	tr|A0A553SQ09|A0A553SQ09_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15360PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	441.25433349609375	3	441.253993	1320.74015	1.4046	0.00061976	-0.43491	-0.00019191	0.96964	0.00042786	441.2537172485591	65.982	1.8287	63.036	62.554	64.383	-2.9459					68	35	4	0	0	0	0.72069	1	2677	2677		22.562	0	1	107960			26441	34103	21634	21661	29611	29611					0.09261002177413502
KTFLAGTAAM	10	Unmodified	_KTFLAGTAAM_					0	0	0			REV__ENST00000456845.6_1_8:38848603-38848879:-|nuORF	REV__ENST00000456845.6_1_8:38848603-38848879:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	505.77044677734375	2	505.770603	1009.52665	0.77379	0.00039136	-2.4668	-0.0012477	-1.6931	-0.0008563	505.7692553783024	81.352	1.4901	81.352	81.162	82.652	0					78	35	4	0	0	0	0.3094	1	8371	8371		79.713	0.26157	1	6347500	+		26442	26036	21635	21662	29612	29612					0.022269981968747743
KTFLAGTAAM	10	Unmodified	_KTFLAGTAAM_					0	0	0			REV__ENST00000456845.6_1_8:38848603-38848879:-|nuORF	REV__ENST00000456845.6_1_8:38848603-38848879:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	505.770603	1009.52665	-0.30076	-0.00015212	-5.8703	-0.002969	-6.1711	-0.0031211	506.26785908053967	83.073	0.18069	81.474	81.369	81.55	-1.5989	0.060897	-0.0031505	NaN	79.713	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6113	+		26443	26036	21635	21662							0.022269981968747743
KTFLMCSV	8	Unmodified	_KTFLMCSV_					0	0	0		ENST00000372629.4_1_X:102842228-102842288:+|nuORF	ENST00000372629.4_1_X:102842228-102842288:+|nuORF	ENST00000372629.4_1_X:102842228-102842288:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.27545166015625	2	464.735174	927.455795	-1.3075	-0.00060764	1.6985	0.00078935	0.39099	0.00018171	464.73576606306665	63.956	0.35905	63.956	63.732	64.091	0					14	8	2	0	0	0	0.028476	1	5758	5758		10.265	0	1	483850			26444	10984	21636	21663	29613	29613					-0.010834181122959308
KTFLSHFE	8	Unmodified	_KTFLSHFE_					0	0	0		PLCE1|p.M1919Hfs*27|1|0.04|ENSG00000138193|chr10:94306554-94306555|-/T|frameshift_variant;ENSG00000138193|ENST00000371380|PLCE1	PLCE1|p.M1919Hfs*27|1|0.04|ENSG00000138193|chr10:94306554-94306555|-/T|frameshift_variant	PLCE1|p.M1919Hfs*27|1|0.04|ENSG00000138193|chr10:94306554-94306555|-/T|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.7838134765625	2	504.761092	1007.50763	-0.22674	-0.00011445	1.9181	0.00096818	1.6914	0.00085373	504.76212683819324	101.72	0.42587	101.72	101.48	101.91	0					15	9	2	0	0	0	0.028476	1	11312	11312		38.806	19.446	1	319750			26445	4669	21637	21664	29614	29614					0.004177848974677545
KTFPKAVAR	9	Unmodified	_KTFPKAVAR_					0	0	0		DLGAP3|p.S416F|1|0.09|ENSG00000116544|chr1:34900134-34900134|G/A|missense_variant	DLGAP3|p.S416F|1|0.09|ENSG00000116544|chr1:34900134-34900134|G/A|missense_variant	DLGAP3|p.S416F|1|0.09|ENSG00000116544|chr1:34900134-34900134|G/A|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	509.31475830078125	2	509.313826	1016.6131	-0.27068	-0.00013786	3.139	0.0015987	2.8683	0.0014609	509.3152813200738	40.689	0.761	40.689	40.479	41.24	0					33	16	3	0	0	0	0.1149	1	2490	2490		93.143	26.714	1	883250			26446	740	21638	21665	29615	29615					0.10545745813737994
KTFSKAEDL	9	Unmodified	_KTFSKAEDL_					0	0	0		tr|A0A7D6VQD6|A0A7D6VQD6_9CLOTSite-specificDNA-methyltransferase(adenine-specific)OS=ClostridiumintestinaleOX=36845GN=HZF06_20580PE=4SV=1	tr|A0A7D6VQD6|A0A7D6VQD6_9CLOTSite-specificDNA-methyltransferase(adenine-specific)OS=ClostridiumintestinaleOX=36845GN=HZF06_20580PE=4SV=1	tr|A0A7D6VQD6|A0A7D6VQD6_9CLOTSite-specificDNA-methyltransferase(adenine-specific)OS=ClostridiumintestinaleOX=36845GN=HZF06_20580PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.778564453125	2	519.776939	1037.53933	-0.50328	-0.00026159	0.04528	2.3536E-05	-0.458	-0.00023806	519.7768395446219	62.297	1.9726	58.839	58.057	60.029	-3.4577					89	40	3	0	0	0	0.48047	1	4315	4315		44.377	1.981	1	1427500			26447	34843	21639	21666	29616	29616					0.022057328607616
KTFSQKGHL	9	Unmodified	_KTFSQKGHL_					0	0	0		ENST00000427606.2_1_8:146202527-146219907:-|nuORF;ENST00000426361.6_2_8:146202527-146225127:-|nuORF	ENST00000427606.2_1_8:146202527-146219907:-|nuORF	ENST00000427606.2_1_8:146202527-146219907:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.293212890625	2	523.293091	1044.57163	0.34424	0.00018014	-1.3569	-0.00071007	-1.0127	-0.00052993	523.292611985913	34.411	1.6477	31.622	30.953	32.601	-2.7881					71	32	4	0	0	0	0.56889	1	1005	1005		35.618	2.8059	1	71254			26448	11735	21640	21667	29617	29617					0.05112565054423612
KTFVRWWQWHR	11	Unmodified	_KTFVRWWQWHR_					0	0	0			REV__nc|ENSG00000133026|P35580|MYH10	REV__nc|ENSG00000133026|P35580|MYH10	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.78466796875	3	543.956505	1628.84768	0.1655	9.0025E-05	2.4585	0.0013373	2.624	0.0014273	543.9577081178735	58.17	0.46206	58.17	57.941	58.403	0					14	10	2	0	0	0	0.026505	1	4950	4950		5.6988	4.5505	1	207680	+		26449	19119	21641	21668	29618	29618					0.058414366221313685
KTFYMVLL	8	Unmodified	_KTFYMVLL_					0	0	0		ENSG00000023839|ENST00000647814|ABCC2	ENSG00000023839|ENST00000647814|ABCC2	ENSG00000023839|ENST00000647814|ABCC2	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.3038024902344	2	507.788264	1013.56198	1.3264	0.00067354	-1.0482	-0.00053226	0.27822	0.00014128	508.287156471758	90.674	0.19705	89.372	89.225	89.422	-1.302					5	3	2	0	0	0	0.028476	1	8004	8004		38.806	13.232	1	5388			26450	1041	21642	21669	29619	29619					0.05573660724689944
KTGDLTIVQ	9	Unmodified	_KTGDLTIVQ_					0	0	0			REV__ENST00000487266.1_1_21:27107719-27124637:+|nuORF	REV__ENST00000487266.1_1_21:27107719-27124637:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	487.78082275390625	2	487.779482	973.544411	0.47488	0.00023164	-0.30275	-0.00014768	0.17213	8.3961E-05	487.7791943093154	74.268	0.99019	74.268	74.056	75.046	0					51	24	4	0	0	0	0.084152	1	7328	7328		101.46	2.8305	1	5940100	+		26451	20394	21643	21670	29620	29620					0.05658036723366422
KTGDLTIVQ	9	Unmodified	_KTGDLTIVQ_					0	0	0			REV__ENST00000487266.1_1_21:27107719-27124637:+|nuORF	REV__ENST00000487266.1_1_21:27107719-27124637:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	487.779482	973.544411	0.47488	0.00023164	-0.30275	-0.00014768	0.17213	8.3961E-05	487.7791943093154	74.268	0.99019	74.268	74.056	75.046	0	-0.022656	0.00015946	NaN	101.46	51	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5940100	+		26452	20394	21643	21670							0.05658036723366422
KTGDLTIVQ	9	Unmodified	_KTGDLTIVQ_					0	0	0			REV__ENST00000487266.1_1_21:27107719-27124637:+|nuORF	REV__ENST00000487266.1_1_21:27107719-27124637:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	487.779482	973.544411	-0.36378	-0.00017745	-0.92615	-0.00045176	-1.2899	-0.0006292	487.77884115524745	76.167	1.8688	74.313	73.586	75.455	-1.854	0.022656	-0.00044869	NaN	101.46	44	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29627	+		26453	20394	21643	21670							0.05658036723366422
KTGKAKKQL	9	Unmodified	_KTGKAKKQL_					0	0	0		tr|A0A7D6ZZX0|A0A7D6ZZX0_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_21880PE=3SV=1	tr|A0A7D6ZZX0|A0A7D6ZZX0_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_21880PE=3SV=1	tr|A0A7D6ZZX0|A0A7D6ZZX0_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_21880PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.2884216308594	2	501.326934	1000.63931	1.6879	0.00084619	-0.91502	-0.00045873	0.77288	0.00038747	501.32625862037906	137.03	1.3492	135.48	135.32	136.67	-1.5437					29	28	2	0	0	0	0.027462	1	13397	13397		21.96	1.9631	1	18478			26454	35977	21644	21671	29621	29621					0.13902014985217193
KTGLLRAAATL	11	Unmodified	_KTGLLRAAATL_					0	0	0			REV__ENSG00000062485|ENST00000351328|CS	REV__ENSG00000062485|ENST00000351328|CS	MULTI-SECPEP	OvCa9_classI_Rep2	2	558.8173828125	2	557.850773	1113.68699	0.32698	0.0001824	-0.68712	-0.00038331	-0.36014	-0.0002009	557.8502499008415	45.767	1.0479	43.057	42.747	43.794	-2.7097					41	20	3	0	0	0	0.025673	1	2668	2668		65.465	7.2355	1	65840	+		26455	16751	21645	21672	29622	29622					0.1346966918540602
KTGPALHT	8	Unmodified	_KTGPALHT_					0	0	0			REV__ENSG00000153048|ENST00000311052|CARHSP1	REV__ENSG00000153048|ENST00000311052|CARHSP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	413.2278747558594	2	412.734877	823.455202	0.4884	0.00020158	4.0779	0.0016831	4.5663	0.0018847	412.73489483961697	55.754	0.29124	55.754	55.641	55.932	0					9	6	2	0	0	0	0.028476	1	4577	4577		21.96	0	1	53062	+		26456	20317	21646	21673	29623	29623					0.03641246554514055
KTGPLLILCL	10	Unmodified	_KTGPLLILCL_					0	0	0			REV__nc|ENSG00000005189|Q96IC2-2|REXO5	REV__nc|ENSG00000005189|Q96IC2-2|REXO5	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.818603515625	2	535.835746	1069.65694	0.31852	0.00017068	2.4002	0.0012861	2.7187	0.0014568	535.8367892560997	63.097	0.63494	63.097	62.741	63.376	0					34	15	3	0	0	0	0.027204	1	5634	5634		11.511	0	1	1214100	+		26457	16395	21647	21674	29624	29624					0.12489594195858444
KTGRCLRRENL	11	Unmodified	_KTGRCLRRENL_					0	0	0		ENST00000547933.1_1_17:3593719-3599299:-|nuORF;P2RX5|p.D187Tfs*6|1|0.11|ENSG00000083454|chr17:3690125-3690125|C/-|frameshift_variant;nc|ENSG00000083454|Q93086-2|P2RX5;nc|ENSG00000083454|Q93086-5|P2RX5;nc|ENSG00000083454|Q93086-1|P2RX5;ENSG00000083454|ENST00000225328|P2RX5;nc|ENSG00000083454|Q93086-4|P2RX5;nc|ENSG00000083454|Q93086|P2RX5	ENST00000547933.1_1_17:3593719-3599299:-|nuORF	ENST00000547933.1_1_17:3593719-3599299:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	449.7588806152344	3	449.254222	1344.74084	2.9517	0.0013261	3.2626	0.0014657	6.2143	0.0027918	449.5908012877973	72.264	0.3145	69.757	69.485	69.799	-2.5071					7	5	2	0	0	0	0.025568	1	5827	5827		21.032	8.0748	1	8908.9			26458	1692	21648	21675	29625	29625					0.08225518345489036
KTGTVFEIGLL	11	Unmodified	_KTGTVFEIGLL_					0	0	0			REV__ENST00000293208.13_1_17:73701692-73702598:+|nuORF	REV__ENST00000293208.13_1_17:73701692-73702598:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3421020507812	2	589.344989	1176.67542	-2.1868	-0.0012888	-1.3084	-0.00077111	-3.4952	-0.0020599	589.3441619466173	148.26	4.549	146.82	145.53	150.08	-1.435					304	95	6	0	0	0	0.7046	1	14529	14529		28.081	1.3886	1	385010	+		26459	24167	21649	21676	29626	29626					0.09415427371436635
KTHNPKLKK	9	Unmodified	_KTHNPKLKK_					0	0	0			REV__ENSG00000272636|ENST00000613549|DOC2B	REV__ENSG00000272636|ENST00000613549|DOC2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.7745971679688	2	547.345658	1092.67676	2.4405	0.0013358	2.4775	0.001356	4.918	0.0026918	547.3471188942262	97.208	0.43094	97.208	96.966	97.397	0					17	9	2	0	0	0	0.027462	1	10644	10644		29.15	17.639	1	159960	+		26460	23615	21650	21677	29627	29627					0.13413106250845885
KTHQKVKRFSQ	11	Unmodified	_KTHQKVKRFSQ_					0	0	0			REV__nc|ENSG00000114062|Q05086-2|UBE3A	REV__nc|ENSG00000114062|Q05086-2|UBE3A	MULTI-MSMS	OvCa9_classI_Rep2	2	462.9366455078125	3	462.936999	1385.78917	0.079191	3.666E-05	-0.90827	-0.00042047	-0.82908	-0.00038381	462.9367014144655	44.408	4.3763	41.698	41.303	45.679	-2.7097					263	87	6	0	0	0	0.66539	1	2589	2589		38.714	3.5359	1	4456400	+		26461	18177	21651	21678	29628	29628					0.1117033525702027
KTIALLVAGL	10	Unmodified	_KTIALLVAGL_					0	0	0		nc|ENSG00000196776|Q08722-2|CD47;nc|ENSG00000196776|Q08722-3|CD47;nc|ENSG00000196776|Q08722-4|CD47;ENSG00000196776|ENST00000361309|CD47	nc|ENSG00000196776|Q08722-2|CD47	nc|ENSG00000196776|Q08722-2|CD47	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.8280944824219	2	499.83406	997.653567	-0.60853	-0.00030416	0.14417	7.2061E-05	-0.46436	-0.0002321	499.8340558930564	73.48	2.1907	71.08	70.534	72.725	-2.3999					61	41	2	0	0	0	0.026659	1	6047	6047		45.972	0	1	185510			26462	8649	21652	21679	29629	29629					0.1546466741350514
KTICYRIK	8	Carbamidomethyl (C)	_KTIC(Carbamidomethyl (C))YRIK_	KTIC(1)YRIK		KTIC(56)YRIK		0	1	0			REV__ENSG00000155363|ENST00000369645|MOV10	REV__ENSG00000155363|ENST00000369645|MOV10	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.3148803710938	2	541.312969	1080.61138	2.3286	0.0012605	1.1973	0.00064809	3.5259	0.0019086	541.3134189727126	134.82	1.0887	133.28	132.97	134.05	-1.5437					46	20	3	0	0	0	0.64026	1	13044	13044		55.504	11.387	1	159960	+		26463	20422	21653	21680	29630	29630	224				0.07430368733480464
KTIDASVSKK	10	Unmodified	_KTIDASVSKK_					0	0	0		nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP;ENST00000537653.5_1_12:14576849-14628955:+|nuORF;ENST00000535179.1_1_12:14619386-14628955:+|nuORF	nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	MULTI-MSMS	OvCa9_classI_Rep2	2	538.818603515625	2	538.819138	1075.62372	-0.81642	-0.0004399	0.74317	0.00040044	-0.073246	-3.9466E-05	538.8193767994228	31.825	0.5936	29.115	28.937	29.53	-2.7097					24	11	3	0	0	0	0.43433	1	1003	1003		63.534	6.8128	1	41232			26464	7223	21654	21681	29631	29631					0.08893683677524677
KTIDTLTL	8	Unmodified	_KTIDTLTL_					0	0	0			REV__tr|A0A7D6ZK28|A0A7D6ZK28_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23750PE=4SV=1	REV__tr|A0A7D6ZK28|A0A7D6ZK28_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23750PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	452.77178955078125	2	452.771126	903.527698	1.1688	0.00052922	-1.3063	-0.00059147	-0.13748	-6.2249E-05	452.7704123603052	139.8	1.0809	139.8	139.51	140.59	0					44	22	3	0	0	0	0.70469	1	16312	16312		42.396	0	1	354730	+		26465	32098	21655	21682	29632	29632					0.07207535837426349
KTIDYVPLE	9	Unmodified	_KTIDYVPLE_					0	0	0			REV__nc|ENSG00000102078|O95258-2|SLC25A14	REV__nc|ENSG00000102078|O95258-2|SLC25A14	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.7926635742188	2	539.294965	1076.57538	-0.80735	-0.0004354	-2.0561	-0.0011088	-2.8634	-0.0015442	539.2938831819134	57.919	0.76239	54.574	54.086	54.849	-3.3449					29	14	3	0	0	0	0.027411	1	3794	3794		54.776	0	1	441130	+		26466	17536	21656	21683	29633	29633					0.040151900376031335
KTIGEGLIP	9	Unmodified	_KTIGEGLIP_					0	0	0		tr|A0A553SH48|A0A553SH48_NIACIInorganicphosphatetransporterOS=NialliacirculansOX=1397GN=CEQ21_12110PE=4SV=1	tr|A0A553SH48|A0A553SH48_NIACIInorganicphosphatetransporterOS=NialliacirculansOX=1397GN=CEQ21_12110PE=4SV=1	tr|A0A553SH48|A0A553SH48_NIACIInorganicphosphatetransporterOS=NialliacirculansOX=1397GN=CEQ21_12110PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.2679748535156	2	464.279118	926.543683	1.0236	0.00047524	-1.3237	-0.00061457	-0.3001	-0.00013933	464.27819825196946	85.698	1.579	83.052	82.8	84.379	-2.6463					41	31	2	0	0	0	0.027462	1	7215	7215		30.318	3.6248	1	70450			26467	33238	21657	21684	29634	29634					0.07747242074333371
KTIGEGLIP	9	Unmodified	_KTIGEGLIP_					0	0	0		tr|A0A553SH48|A0A553SH48_NIACIInorganicphosphatetransporterOS=NialliacirculansOX=1397GN=CEQ21_12110PE=4SV=1	tr|A0A553SH48|A0A553SH48_NIACIInorganicphosphatetransporterOS=NialliacirculansOX=1397GN=CEQ21_12110PE=4SV=1	tr|A0A553SH48|A0A553SH48_NIACIInorganicphosphatetransporterOS=NialliacirculansOX=1397GN=CEQ21_12110PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	464.279118	926.543683	-1.1851	-0.00055022	1.117	0.00051862	-0.06807	-3.1604E-05	464.2792043627778	85.277	0.78849	83.056	82.648	83.436	-2.2204	-0.076503	0.00051617	NaN	37.812	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89639			26468	33238	21657	21684							0.07747242074333371
KTIHLTLKV	9	Unmodified	_KTIHLTLKV_					0	0	0		ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	ENSG00000213886|ENST00000377050|UBD	MULTI-MSMS	OvCa99_classI_Rep5	1	526.8419799804688	2	526.844959	1051.67537	-0.12236	-6.4466E-05	-0.7109	-0.00037453	-0.83326	-0.000439	526.8443915358555	64.912	0.79556	64.912	64.672	65.467	0					38	19	3	0	0	0	0.42048	1	5936	5936		50.034	0.59196	1	1664900			26469	9152	21658	21685	29635	29635					0.1515947216207678
KTIILQEKI	9	Unmodified	_KTIILQEKI_					0	0	0		ENSG00000118600|ENST00000261234|RXYLT1	ENSG00000118600|ENST00000261234|RXYLT1	ENSG00000118600|ENST00000261234|RXYLT1	MULTI-MSMS	OvCa9_classI_Rep2	2	543.3480224609375	2	543.350074	1084.6856	-0.55112	-0.00029945	0.16238	8.823E-05	-0.38874	-0.00021122	543.35003399243	64.404	1.5541	61.679	61.389	62.943	-2.7246					78	29	4	0	0	0	0.13504	1	4914	4914		87.696	7.9839	1	578800			26470	3318	21659	21686	29636	29636					0.14664035096643602
KTIILQEKI	9	Unmodified	_KTIILQEKI_					0	0	0		ENSG00000118600|ENST00000261234|RXYLT1	ENSG00000118600|ENST00000261234|RXYLT1	ENSG00000118600|ENST00000261234|RXYLT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.349365234375	2	543.350074	1084.6856	-1.037	-0.00056347	0.41925	0.0002278	-0.61777	-0.00033567	543.3501392794037	65.394	1.6504	61.909	61.552	63.202	-3.4854					81	33	4	0	0	0	0.1149	1	4703	4703		93.143	7.9824	1	594830			26471	3318	21659	21686	29637	29637					0.14664035096643602
KTIINSGFQ	9	Unmodified	_KTIINSGFQ_					0	0	0		ENST00000417404.2_1_17:28960066-28961284:+|nuORF	ENST00000417404.2_1_17:28960066-28961284:+|nuORF	ENST00000417404.2_1_17:28960066-28961284:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.75921630859375	2	504.279649	1006.54475	-1.1851	-0.0005976	-0.52823	-0.00026637	-1.7133	-0.00086397	504.2785943482346	52.998	1.1077	49.79	49.602	50.71	-3.208					35	21	2	0	0	0	0.027462	1	3284	3284		27.882	3.6795	1	74185			26472	11621	21660	21687	29638	29638					0.0417345644324314
KTIIYLFK	8	Unmodified	_KTIIYLFK_					0	0	0			REV__nc|ENSG00000141556|Q9BTW9-5|TBCD	REV__nc|ENSG00000141556|Q9BTW9-5|TBCD	MULTI-MSMS	OvCa9_classI_Rep3	3	513.3287963867188	2	513.323328	1024.6321	1.1851	0.00060836	2.3203	0.0011911	3.5055	0.0017994	513.8246530993847	67.449	2.102	64.562	64.137	66.239	-2.8873					146	41	6	0	0	0	0.76021	1	2953	2953		20.947	0	1	2025700	+		26473	19747	21661	21688	29639	29639					0.12077282384802857
KTIKAFKN	8	Unmodified	_KTIKAFKN_					0	0	0		ENSG00000011007|ENST00000613537|ELOA;nc|ENSG00000011007|Q14241-1|ELOA	ENSG00000011007|ENST00000613537|ELOA	ENSG00000011007|ENST00000613537|ELOA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	474.9192810058594	2	475.295102	948.575651	-0.66083	-0.00031409	1.523	0.00072387	0.86217	0.00040978	475.2955070535954	95.484	1.5568	93.016	92.11	93.666	-2.4685					45	30	3	0	0	0	0.028476	1	8338	8338		23.042	10.836	1	77487			26474	952	21662	21689	29640	29640					0.09930654548134044
KTIKIEMVL	9	Unmodified	_KTIKIEMVL_					0	0	0		tr|A0A553SM39|A0A553SM39_NIACICopperresistanceproteinOS=NialliacirculansOX=1397GN=CEQ21_21855PE=4SV=1	tr|A0A553SM39|A0A553SM39_NIACICopperresistanceproteinOS=NialliacirculansOX=1397GN=CEQ21_21855PE=4SV=1	tr|A0A553SM39|A0A553SM39_NIACICopperresistanceproteinOS=NialliacirculansOX=1397GN=CEQ21_21855PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.2996215820312	2	537.833203	1073.65185	2.1154	0.0011377	-3.0518	-0.0016414	-0.9364	-0.00050363	537.8314221677764	95.687	0.75523	95.687	95.37	96.126	0					38	17	3	0	0	0	0.027462	1	10448	10448		51.335	0	1	1066900			26475	33796	21663	21690	29641	29641					0.11797290333242927
KTIKMWEV	8	Unmodified	_KTIKMWEV_					0	0	0		ENST00000572915.6_1_17:2573570-2586914:+|nuORF;nc|ENSG00000007168|P43034-2|PAFAH1B1;ENSG00000007168|ENST00000397195|PAFAH1B1	ENST00000572915.6_1_17:2573570-2586914:+|nuORF	ENST00000572915.6_1_17:2573570-2586914:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	517.7903442382812	2	517.788795	1033.56304	-0.31655	-0.0001639	0.69989	0.0003624	0.38335	0.00019849	517.7890717256447	73.579	0.74403	73.579	73.276	74.02	0					32	18	2	0	0	0	0.18374	1	7230	7230		127.46	23.405	1	3749200			26476	894	21664	21691	29642	29642					0.04759875093577648
KTILILVMR	9	Unmodified	_KTILILVMR_					0	0	0		ENSG00000111432|ENST00000229030|FZD10	ENSG00000111432|ENST00000229030|FZD10	ENSG00000111432|ENST00000229030|FZD10	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.81982421875	2	543.857012	1085.69947	0.49414	0.00026874	-0.094975	-5.1653E-05	0.39916	0.00021709	543.8568847516511	74.197	0.46057	74.197	74.056	74.517	0					14	11	2	0	0	0	0.027462	1	7324	7324		44.117	12.587	1	445040			26477	2826	21665	21692	29643	29643					0.1600498932409664
KTILIQRETN	10	Unmodified	_KTILIQRETN_					0	0	0			REV__HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|170|3|anti-sense	REV__HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|170|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	405.7641296386719	3	405.906705	1214.69829	1.0495	0.00042598	2.803	0.0011378	3.8525	0.0015637	406.2427888489185	91.353	0.9654	88.811	88.449	89.415	-2.5425					23	18	2	0	0	0	0.027233	1	7924	7924		10.587	0	1	21628	+		26478	28291	21666	21693	29644	29644					0.09952446488910027
KTILNVTLDP	10	Unmodified	_KTILNVTLDP_					0	0	0		tr|A0A7D6VVM4|A0A7D6VVM4_9CLOTPhagemajorcapsidproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11800PE=4SV=1	tr|A0A7D6VVM4|A0A7D6VVM4_9CLOTPhagemajorcapsidproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11800PE=4SV=1	tr|A0A7D6VVM4|A0A7D6VVM4_9CLOTPhagemajorcapsidproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11800PE=4SV=1	MSMS	OvCa9_classI_Rep2	2	557.3291625976562	2	557.329339	1112.64412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.032	1	79.383	78.883	79.883	-1.6485								0	0	0	0.10026	1	6865	6865		69.628	7.5202	1				26479	35225	21667	21694	29645	29645					0.0923085433732922
KTILTDIIV	9	Unmodified	_KTILTDIIV_					0	0	0			REV__nc|ENSG00000122779|O15164-2|TRIM24	REV__nc|ENSG00000122779|O15164-2|TRIM24	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.296630859375	2	508.323525	1014.6325	0.59549	0.0003027	-1.1693	-0.00059437	-0.57378	-0.00029167	508.3227181743554	45.563	0.17116	45.563	45.496	45.667	0					6	3	2	0	0	0	0.027433	1	3172	3172		74.255	0	1	120840	+		26480	18614	21668	21695	29646	29646					0.1257665731400266
KTILTTSH	8	Unmodified	_KTILTTSH_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;ENST00000467758.1_1_1:62941350-62941566:-|nuORF	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-SECPEP	OvCa99_classI_Rep5	1	451.7534484863281	2	450.761092	899.507631	-0.084137	-3.7926E-05	0.28663	0.0001292	0.20249	9.1274E-05	450.76104374223536	53.824	1.4162	53.824	53.564	54.98	0					72	33	4	0	0	0	0.028476	1	4458	4458		16.473	8.7829	1	4210900			26481	3189	21669	21696	29647	29647					0.053857848974644185
KTIRLNNL	8	Unmodified	_KTIRLNNL_					0	0	0		tr|A0A553SR59|A0A553SR59_NIACI5-methyltetrahydropteroyltriglutamate--homocysteinemethyltransferaseOS=NialliacirculansOX=1397GN=metEPE=3SV=1	tr|A0A553SR59|A0A553SR59_NIACI5-methyltetrahydropteroyltriglutamate--homocysteinemethyltransferaseOS=NialliacirculansOX=1397GN=metEPE=3SV=1	tr|A0A553SR59|A0A553SR59_NIACI5-methyltetrahydropteroyltriglutamate--homocysteinemethyltransferaseOS=NialliacirculansOX=1397GN=metEPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.30450439453125	2	486.303458	970.592364	0.78572	0.0003821	2.8872	0.0014041	3.673	0.0017862	486.30477333878326	121.54	2.2543	120.51	120.01	122.27	-1.0286					108	42	4	0	0	0	0.74229	1	9316	9316		30.504	0.6621	1	892460			26482	34231	21670	21697	29648	29648					0.10589155434081476
KTISRIKAK	9	Unmodified	_KTISRIKAK_					0	0	0			REV__tr|A0A553SRL7|A0A553SRL7_NIACIIS3familytransposaseOS=NialliacirculansOX=1397GN=CEQ21_01350PE=4SV=1	REV__tr|A0A553SRL7|A0A553SRL7_NIACIIS3familytransposaseOS=NialliacirculansOX=1397GN=CEQ21_01350PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.8240356445312	2	522.848033	1043.68151	0.65949	0.00034481	-1.1933	-0.00062391	-0.5338	-0.0002791	522.8469825873935	80.456	0.15017	78.76	78.668	78.819	-1.6951					4	2	2	0	0	0	0.027462	1	6802	6802		34.173	3.6689	1	6739.8	+		26483	30746	21671	21698	29649	29649					0.16141990393589367
KTITGDID	8	Unmodified	_KTITGDID_					0	0	0			REV__ENSG00000101577|ENST00000677752|LPIN2	REV__ENSG00000101577|ENST00000677752|LPIN2	MULTI-MSMS	OvCa99_classI_Rep5	1	431.7295837402344	2	431.729458	861.444362	-0.38367	-0.00016564	2.113	0.00091227	1.7294	0.00074662	431.7302574507996	25.618	0.35097	25.618	25.442	25.793	0					10	6	2	0	0	0	0.66057	1	595	595		51.335	7.2187	1	105440	+		26484	17506	21672	21699	29650	29650					0.008097993895603395
KTKAKTLIN	9	Unmodified	_KTKAKTLIN_					0	0	0			REV__ENSG00000133020|ENST00000403437|MYH8	REV__ENSG00000133020|ENST00000403437|MYH8	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.2903747558594	2	508.826766	1015.63898	-0.66	-0.00033583	3.9201	0.0019947	3.2601	0.0016588	508.8287226869196	115.27	1.0377	115.15	114.9	115.94	-0.11777					35	20	3	0	0	0	0.027446	1	11026	11026		60.118	17.722	1	62444	+		26485	19118	21673	21700	29651	29651					0.1317859526537859
KTKAQNQLT	9	Unmodified	_KTKAQNQLT_					0	0	0			REV__ENST00000591270.1_1_17:49270805-49337516:-|nuORF	REV__ENST00000591270.1_1_17:49270805-49337516:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	516.29345703125	2	516.29583	1030.57711	-1.0165	-0.00052483	-0.30965	-0.00015987	-1.3262	-0.0006847	516.2958083039246	26.211	1.1989	26.211	25.992	27.191	0					78	23	6	0	0	0	0.48047	1	721	721		44.377	3.599	1	11731000	+		26486	16486	21674	21701	29652	29652					0.06304243846216195
KTKDGVREV	9	Unmodified	_KTKDGVREV_					0	0	0		ENSG00000067560|ENST00000418115|RHOA	ENSG00000067560|ENST00000418115|RHOA	ENSG00000067560|ENST00000418115|RHOA	MULTI-MSMS	OvCa99_classI_Rep5	1	516.2955932617188	2	516.29583	1030.57711	-1.0165	-0.00052483	-0.30965	-0.00015987	-1.3262	-0.0006847	516.2958083039246	26.211	1.1989	26.211	25.992	27.191	0					78	23	6	0	0	0	0.023079	1	670	670		143.37	26.47	1	11731000			26487	1376	21675	21702	29653	29653					0.06304243846238933
KTKDGVREV	9	Unmodified	_KTKDGVREV_					0	0	0		ENSG00000067560|ENST00000418115|RHOA	ENSG00000067560|ENST00000418115|RHOA	ENSG00000067560|ENST00000418115|RHOA	MULTI-MSMS	OvCa9_classI_Rep2	2	516.29541015625	2	516.29583	1030.57711	0.9175	0.0004737	-1.1848	-0.0006117	-0.26729	-0.000138	516.295098499438	30.292	1.2323	27.582	27.36	28.592	-2.7097					62	24	4	0	0	0	0.13326	2	819	819;834		88.177	28.059	1	509350			26488	1376	21675	21702	29654;29655	29654					0.06304243846238933
KTKDPIIREK	10	Unmodified	_KTKDPIIREK_					0	0	0		ENSG00000126947|ENST00000372829|ARMCX1	ENSG00000126947|ENST00000372829|ARMCX1	ENSG00000126947|ENST00000372829|ARMCX1	MULTI-MSMS	OvCa9_classI_Rep4_	4	409.91900634765625	3	409.918834	1226.73467	0.73118	0.00029973	-0.74204	-0.00030418	-0.010859	-4.4513E-06	409.9183768328793	21.331	1.4714	19.992	19.456	20.927	-1.3386					61	29	4	0	0	0	0.50453	2	153	153;165		53.597	11.889	1	143580			26489	3813	21676	21703	29656;29657	29656					0.13037323385583477
KTKDSGALRV	10	Unmodified	_KTKDSGALRV_					0	0	0		ENSG00000204439|ENST00000375911|C6orf47	ENSG00000204439|ENST00000375911|C6orf47	ENSG00000204439|ENST00000375911|C6orf47	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.7598876953125	2	537.81693	1073.61931	-0.40872	-0.00021981	3.5901	0.0019308	3.1814	0.001711	537.8187877974669	54.42	0.50466	54.42	54.214	54.718	0					22	11	3	0	0	0	0.027145	1	4390	4390		12.812	6.8906	1	461560			26490	8985	21677	21704	29658	29658					0.08544219254599739
KTKEEYVKH	9	Unmodified	_KTKEEYVKH_					0	0	0			REV__ENSG00000165632|ENST00000344293|TAF3	REV__ENSG00000165632|ENST00000344293|TAF3	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.2803955078125	2	581.316763	1160.61897	-1.1073	-0.00064368	-2.8944	-0.0016826	-4.0017	-0.0023262	581.3152271595211	42.26	0.30466	42.26	42.068	42.372	0					11	6	2	0	0	0	0.027462	1	2686	2686		41.427	0	1	53156	+		26491	21102	21678	21705	29659	29659					0.04508799534755781
KTKEGVLYV	9	Unmodified	_KTKEGVLYV_					0	0	0		nc|ENSG00000145335|P37840-2|SNCA;ENSG00000145335|ENST00000394991|SNCA;nc|ENSG00000145335|P37840-3|SNCA;ENSG00000074317|ENST00000393693|SNCB	nc|ENSG00000145335|P37840-2|SNCA	nc|ENSG00000145335|P37840-2|SNCA	MULTI-MSMS	OvCa9_classI_Rep2	2	519.30810546875	2	518.8055	1035.59645	-0.79718	-0.00041358	0.75546	0.00039194	-0.041718	-2.1643E-05	519.3078279562977	60.967	2.5872	58.197	57.082	59.669	-2.7702					124	49	3	0	0	0	0.13504	2	4483	4483;4488		87.696	32.192	1	1302900			26492	5216	21679	21706	29660;29661	29660					0.08007200137149084
KTKEGVLYV	9	Unmodified	_KTKEGVLYV_					0	0	0		nc|ENSG00000145335|P37840-2|SNCA;ENSG00000145335|ENST00000394991|SNCA;nc|ENSG00000145335|P37840-3|SNCA;ENSG00000074317|ENST00000393693|SNCB	nc|ENSG00000145335|P37840-2|SNCA	nc|ENSG00000145335|P37840-2|SNCA	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.30908203125	2	518.8055	1035.59645	-0.26477	-0.00013736	0.78313	0.00040629	0.51835	0.00026893	519.3076174502748	61.805	2.1207	58.347	57.717	59.838	-3.4577					108	43	6	0	0	0	0.075543	3	4287	4245;4287;4300		104.06	27.283	1	2603400			26493	5216	21679	21706	29662;29663;29664	29663					0.08007200137149084
KTKEGVREV	9	Unmodified	_KTKEGVREV_					0	0	0		ENSG00000143878|ENST00000272233|RHOB;ENSG00000155366|ENST00000339083|RHOC;ENST00000473074.1_1_1:113244164-113245337:-|nuORF	ENSG00000143878|ENST00000272233|RHOB;ENSG00000155366|ENST00000339083|RHOC	ENSG00000155366|ENST00000339083|RHOC	MULTI-MSMS	OvCa99_classI_Rep5	1	523.3031616210938	2	523.303655	1044.59276	-1.2004	-0.00062819	0.32413	0.00016962	-0.87631	-0.00045857	523.3038645088309	26.368	1.4	26.368	26.142	27.542	0					63	27	4	0	0	0	0.22035	1	673	673		72.879	16.158	1	3642300			26494	5104;5782	21680	21707	29665	29665					0.07224530363282611
KTKEIFLAR	9	Unmodified	_KTKEIFLAR_					0	0	0		tr|A0A7D7A0P6|A0A7D7A0P6_9CLOTasparaginesynthase(glutamine-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=asnBPE=3SV=1	tr|A0A7D7A0P6|A0A7D7A0P6_9CLOTasparaginesynthase(glutamine-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=asnBPE=3SV=1	tr|A0A7D7A0P6|A0A7D7A0P6_9CLOTasparaginesynthase(glutamine-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=asnBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.3057250976562	2	553.340041	1104.66553	-0.13333	-7.3776E-05	-0.89673	-0.0004962	-1.0301	-0.00056997	553.3392356972917	43.187	0.42161	43.187	43.014	43.435	0					16	9	3	0	0	0	0.027462	1	2837	2837		45.972	16.823	1	151270			26495	36002	21681	21708	29666	29666					0.11738284156695045
KTKEVADRV	9	Unmodified	_KTKEVADRV_					0	0	0		DCST2|p.F512Lfs*57|1|0.11|ENSG00000163354|chr1:155026380-155026381|-/A|frameshift_variant;nc|ENSG00000163354|Q5T1A1-2|DCST2;ENSG00000163354|ENST00000368424|DCST2	DCST2|p.F512Lfs*57|1|0.11|ENSG00000163354|chr1:155026380-155026381|-/A|frameshift_variant	DCST2|p.F512Lfs*57|1|0.11|ENSG00000163354|chr1:155026380-155026381|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3034057617188	2	523.303655	1044.59276	0.92494	0.00048402	-1.1511	-0.00060237	-0.22615	-0.00011835	523.3029320659484	30.44	0.93634	27.73	27.557	28.494	-2.7097					40	18	3	0	0	0	0.2784	1	840	840		65.465	1.9315	1	187740			26496	712	21682	21709	29667	29667					0.07224530363282611
KTKIKLHLKWR	11	Unmodified	_KTKIKLHLKWR_					0	0	0			REV__ENST00000359568.9_1_21:47865495-47865651:+|nuORF	REV__ENST00000359568.9_1_21:47865495-47865651:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.30242919921875	3	484.317151	1449.92962	2.5241	0.0012225	-0.83585	-0.00040482	1.6883	0.00081766	484.6503035641763	89.103	0.92109	89.103	88.883	89.804	0					35	22	3	0	0	0	0.025682	1	9474	9474		33.542	13.227	1	515710	+		26497	24816	21683	21710	29668	29668					0.22265538981218924
KTKLLVAKEG	10	Unmodified	_KTKLLVAKEG_					0	0	0			REV__ENSG00000188739|ENST00000408888|RBM34	REV__ENSG00000188739|ENST00000408888|RBM34	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.81982421875	2	543.847699	1085.68084	0.48518	0.00026386	0.64473	0.00035063	1.1299	0.0006145	543.84804955448	74.267	0.10929	74.267	74.176	74.286	0					4	2	2	0	0	0	0.02709	1	7324	7324		36.447	13.404	1	450310	+		26498	22732	21684	21711	29669	29669					0.14143150953873374
KTKLSKSQDTL	11	Unmodified	_KTKLSKSQDTL_					0	0	0			REV__ENST00000474184.1_1_2:136736721-136740991:-|nuORF	REV__ENST00000474184.1_1_2:136736721-136740991:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	416.9147033691406	3	416.910115	1247.70852	2.9969	0.0012494	4.1402	0.0017261	7.137	0.0029755	416.9117539358964	57.729	0.79951	54.603	54.118	54.917	-3.1264					31	19	2	0	0	0	0.71831	1	1735	1735		23.378	0.79825	1	13439	+		26499	26341	21685	21712	29670	29670					0.09457009423476848
KTKMAKMIGE	10	Unmodified	_KTKMAKMIGE_					0	0	0		ENSG00000127362|ENST00000247879|TAS2R3	ENSG00000127362|ENST00000247879|TAS2R3	ENSG00000127362|ENST00000247879|TAS2R3	MULTI-MSMS	OvCa99_classI_Rep5	1	569.3168334960938	2	568.811944	1135.60934	1.6973	0.00096545	3.135	0.0017832	4.8323	0.0027487	569.3143712532918	125.17	0.60088	125.17	124.79	125.39	0					21	14	2	0	0	0	0.57535	1	14441	14441		45.022	4.244	1	262470			26500	3828	21686	21713	29671	29671					0.04695571933370957
KTKMKQFLL	9	Unmodified	_KTKMKQFLL_					0	0	0		ENST00000287727.7_2_1:52698933-52703207:+|nuORF	ENST00000287727.7_2_1:52698933-52703207:+|nuORF	ENST00000287727.7_2_1:52698933-52703207:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	568.8455810546875	2	568.846645	1135.67874	1.1361	0.00064626	-1.1496	-0.00065395	-0.013528	-7.6955E-06	568.845786397459	122.98	2.0826	121.95	121	123.08	-1.034					125	39	4	0	0	0	0.56189	1	9478	9478		36.447	7.2972	1	474050			26501	10079	21687	21714	29672	29672					0.11632398944448141
KTKPAKATK	9	Unmodified	_KTKPAKATK_					0	0	0		tr|A0A7D6VSD6|A0A7D6VSD6_9CLOTInorganicphosphatetransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_05310PE=4SV=1	tr|A0A7D6VSD6|A0A7D6VSD6_9CLOTInorganicphosphatetransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_05310PE=4SV=1	tr|A0A7D6VSD6|A0A7D6VSD6_9CLOTInorganicphosphatetransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_05310PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	486.81280517578125	2	486.813659	971.612765	-0.51721	-0.00025178	0.25856	0.00012587	-0.25865	-0.00012592	486.8136606093423	57.145	2.3904	54.353	53.634	56.024	-2.792					128	47	4	0	0	0	0.2422	1	4078	4078		69.628	0.8408	1	495540			26502	35017	21688	21715	29673	29673					0.12582326093877327
KTKPLVLKV	9	Unmodified	_KTKPLVLKV_					0	0	0			REV__ENSG00000066583|ENST00000173527|ISOC1	REV__ENSG00000066583|ENST00000173527|ISOC1	MULTI-MSMS	OvCa99_classI_Rep5	1	513.359619140625	2	513.357702	1024.70085	0.77329	0.00039697	0.91426	0.00046934	1.6875	0.00086632	513.3580192906047	152.93	1.5038	152.93	152.62	154.12	0					70	31	3	0	0	0	0.34132	1	17948	17948		58.23	5.2932	1	214180	+		26503	16818	21689	21716	29674	29674					0.18948946684486145
KTKQQHQE	8	Unmodified	_KTKQQHQE_					0	0	0		ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-SECPEP	OvCa9_classI_Rep2	2	514.3113403320312	2	513.76998	1025.52541	-1.0877	-0.00055884	0.2018	0.00010368	-0.88591	-0.00045516	513.769935136483	52.805	1.5823	49.991	49.492	51.075	-2.8139					41	27	2	0	0	0	0.028476	1	3521	3521		40.778	3.6191	1	45936			26504	2227	21690	21717	29675	29675					0.013665001523349929
KTKQQHQE	8	Unmodified	_KTKQQHQE_					0	0	0		ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.3119506835938	2	513.76998	1025.52541	-0.86146	-0.00044259	0.57223	0.000294	-0.28923	-0.0001486	513.7700212976823	52.995	1.4131	49.787	49.451	50.864	-3.208					59	27	3	0	0	0	0.028476	1	3200	3200		62.107	14.192	1	290970			26505	2227	21690	21717	29676	29676					0.013665001523349929
KTKSNTWSP	9	Unmodified	_KTKSNTWSP_					0	0	0		ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.7937622070312	2	524.774731	1047.53491	-1.166	-0.00061189	-0.98472	-0.00051675	-2.1507	-0.0011286	525.2751211561465	91.887	0.45711	89.345	89.212	89.669	-2.5425					11	8	2	0	0	0	0.027462	1	7970	7970		19.104	5.6495	1	31934			26506	4614	21691	21718	29677	29677					0.013042684378433478
KTKSREAET	9	Unmodified	_KTKSREAET_					0	0	0		ENSG00000175267|ENST00000389398|VWA3A;nc|ENSG00000175267|A6NCI4-2|VWA3A	ENSG00000175267|ENST00000389398|VWA3A	ENSG00000175267|ENST00000389398|VWA3A	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2984008789062	2	525.28292	1048.55129	1.0431	0.00054791	-3.5088	-0.0018431	-2.4658	-0.0012952	525.2807317434646	102.01	0.6875	102.01	101.69	102.38	0					25	15	2	0	0	0	0.027433	1	11359	11359		51.335	0	1	202660			26507	7531	21692	21719	29678	29678					0.028953496039548554
KTKSRRAEA	9	Unmodified	_KTKSRRAEA_					0	0	0			REV__ENST00000577759.1_1_17:37360679-37360898:+|nuORF	REV__ENST00000577759.1_1_17:37360679-37360898:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.7941284179688	2	523.806897	1045.59924	-0.6025	-0.00031559	4.137	0.002167	3.5345	0.0018514	523.8088409580245	79.066	0.47788	76.314	76.085	76.562	-2.7514					15	9	2	0	0	0	0.027462	1	6389	6389		37.812	18.452	1	35335	+		26508	17878	21693	21720	29679	29679					0.07826468314647173
KTKSRRAEA	9	Unmodified	_KTKSRRAEA_					0	0	0			REV__ENST00000577759.1_1_17:37360679-37360898:+|nuORF	REV__ENST00000577759.1_1_17:37360679-37360898:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	523.806897	1045.59924	-0.023853	-1.2494E-05	4.3644	0.0022861	4.3405	0.0022736	523.8091015328931	78.02	0.89133	76.231	75.571	76.462	-1.7894	-0.041829	7.2343E-05	NaN	35.152	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23208	+		26509	17878	21693	21720							0.07826468314647173
KTKTGVVI	8	Unmodified	_KTKTGVVI_					0	0	0			REV__tr|A0A7D6VZL8|A0A7D6VZL8_9CLOTPilusassemblyproteinPilMOS=ClostridiumintestinaleOX=36845GN=pilMPE=4SV=1	REV__tr|A0A7D6VZL8|A0A7D6VZL8_9CLOTPilusassemblyproteinPilMOS=ClostridiumintestinaleOX=36845GN=pilMPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	423.2748107910156	2	423.276378	844.538203	-1.0746	-0.00045487	-1.9263	-0.00081535	-3.0009	-0.0012702	423.27545611036373	140.26	1.6211	140.03	139.45	141.07	-0.22696					84	32	4	0	0	0	0.75661	1	13980	13980		19.36	4.6959	1	166850	+		26510	31840	21694	21721	29680	29680					0.10971563282521402
KTKTGVVI	8	Unmodified	_KTKTGVVI_					0	0	0			REV__tr|A0A7D6VZL8|A0A7D6VZL8_9CLOTPilusassemblyproteinPilMOS=ClostridiumintestinaleOX=36845GN=pilMPE=4SV=1	REV__tr|A0A7D6VZL8|A0A7D6VZL8_9CLOTPilusassemblyproteinPilMOS=ClostridiumintestinaleOX=36845GN=pilMPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	423.2755126953125	2	423.276378	844.538203	0.49298	0.00020867	-3.7053	-0.0015684	-3.2124	-0.0013597	423.27473332954634	141.2	1.9317	139.74	139.4	141.33	-1.4627					94	36	4	0	0	0	0.745	2	13793	13793;13855		29.15	5.8783	1	1644700	+		26511	31840	21694	21721	29681;29682	29681					0.10971563282521402
KTKTKKFF	8	Unmodified	_KTKTKKFF_					0	0	0			REV__ENST00000455332.6_1_11:119227426-119227513:-|nuORF	REV__ENST00000455332.6_1_11:119227426-119227513:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.272705078125	2	514.318577	1026.6226	-0.30464	-0.00015668	-3.4551	-0.001777	-3.7597	-0.0019337	514.3165626544901	58.801	1.0978	55.409	55.101	56.199	-3.392					33	21	3	0	0	0	0.028476	1	3941	3941		40.778	2.9666	1	203980	+		26512	26015	21695	21722	29683	29683					0.110355140992624
KTKTKTKF	8	Unmodified	_KTKTKTKF_					0	0	0			REV__ENST00000233813.4_1_2:217559507-217559828:-|nuORF	REV__ENST00000233813.4_1_2:217559507-217559828:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	492.2931213378906	2	491.30821	980.601866	-1.3213	-0.00064914	-0.27915	-0.00013715	-1.6004	-0.00078629	491.30775680079563	83.391	0.91841	81.122	80.909	81.828	-2.2688					25	19	2	0	0	0	0.028476	1	4771	4771		40.778	18.818	1	63209	+		26513	23799	21696	21723	29684	29684					0.11078923719594513
KTKTKTKF	8	Unmodified	_KTKTKTKF_					0	0	0			REV__ENST00000233813.4_1_2:217559507-217559828:-|nuORF	REV__ENST00000233813.4_1_2:217559507-217559828:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.29315185546875	2	491.30821	980.601866	0.41249	0.00020266	-1.4896	-0.00073186	-1.0771	-0.00052921	491.30727475260784	83.66	0.68209	80.998	80.73	81.412	-2.6629					22	13	2	0	0	0	0.028476	1	7015	7015		21.96	0	1	48765	+		26514	23799	21696	21723	29685	29685					0.11078923719594513
KTKTSRSPK	9	Unmodified	_KTKTSRSPK_					0	0	0			REV__ENSG00000180834|ENST00000318631|MAP6D1	REV__ENSG00000180834|ENST00000318631|MAP6D1	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2946166992188	2	516.811648	1031.60874	-1.0307	-0.00053267	3.4292	0.0017723	2.3986	0.0012396	516.8135017086506	26.216	0.19992	26.216	26.042	26.242	0					5	3	2	0	0	0	0.027309	1	646	646		101.25	24.478	1	33141	+		26515	22200	21697	21724	29686	29686					0.09420236600158205
KTKVFLAF	8	Unmodified	_KTKVFLAF_					0	0	0			REV__TSTD2|p.G285Efs*2|1|0.05|ENSG00000136925|chr9:97606243-97606244|-/T|frameshift_variant	REV__TSTD2|p.G285Efs*2|1|0.05|ENSG00000136925|chr9:97606243-97606244|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	477.27398681640625	2	477.294571	952.574589	0.024651	1.1766E-05	-4.4159	-0.0021077	-4.3912	-0.0020959	477.29224098372	94.501	1.4082	92.605	92.255	93.664	-1.8956					73	27	4	0	0	0	0.028476	1	6097	6097		13.775	0	1	452590	+		26516	19421	21698	21725	29687	29687					0.09640440179214238
KTKVIEGRD	9	Unmodified	_KTKVIEGRD_					0	0	0			REV__nc|ENSG00000104728|O15013-7|ARHGEF10	REV__nc|ENSG00000104728|O15013-7|ARHGEF10	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3037109375	2	523.303655	1044.59276	0.92494	0.00048402	-1.1511	-0.00060237	-0.22615	-0.00011835	523.3029320659484	30.44	0.93634	27.73	27.557	28.494	-2.7097					40	18	3	0	0	0	0.34132	1	832	832		58.23	13.853	1	187740	+		26517	17676	21699	21726	29688	29688					0.07224530363305348
KTLCFVENL	9	Unmodified	_KTLCFVENL_					0	0	0			REV__ENST00000339950.4_1_1:62914231-62914300:+|nuORF	REV__ENST00000339950.4_1_1:62914231-62914300:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.8048706054688	2	533.78371	1065.55287	-1.153	-0.00061543	-1.0543	-0.00056277	-2.2073	-0.0011782	533.7835917130959	56.24	0.20102	52.945	52.819	53.02	-3.2944					5	3	2	0	0	0	0.027462	1	3595	3595		45.972	14.017	1	29209	+		26518	24620	21700	21727	29689	29689					0.022712673683372486
KTLDHVLTH	9	Unmodified	_KTLDHVLTH_					0	0	0		ENST00000575132.5_1_17:80888388-80890612:+|nuORF;nc|ENSG00000141556|Q9BTW9-2|TBCD;ENST00000576677.5_1_17:80888388-80900336:+|nuORF;ENST00000576603.5_1_17:80889830-80900336:+|nuORF;ENSG00000141556|ENST00000355528|TBCD;nc|ENSG00000141556|Q9BTW9-4|TBCD	ENST00000575132.5_1_17:80888388-80890612:+|nuORF	ENST00000575132.5_1_17:80888388-80890612:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	532.8001098632812	2	532.298373	1062.58219	-1.5339	-0.00081649	2.9764	0.0015843	1.4425	0.00076786	532.801691081124	47.218	1.836	44.509	43.943	45.779	-2.7097					114	36	4	0	0	0	0.13504	2	2875	2875;2881		87.696	25.589	1	343440			26519	4926	21701	21728	29690;29691	29690					0.053405477088290354
KTLEVRVSI	9	Unmodified	_KTLEVRVSI_					0	0	0			REV__ENSG00000178567|ENST00000322716|EPM2AIP1	REV__ENSG00000178567|ENST00000322716|EPM2AIP1	MULTI-MSMS	OvCa9_classI_Rep3	3	522.8247680664062	2	522.824224	1043.63389	-0.61715	-0.00032266	-0.12179	-6.3677E-05	-0.73894	-0.00038634	522.8241473129543	81.355	1.6752	79.033	78.337	80.012	-2.3226					150	32	6	0	0	0	0.16264	1	4545	4545		82.75	10.873	1	2046900	+		26520	22065	21702	21729	29692	29692					0.11382291402765077
KTLFTFPII	9	Unmodified	_KTLFTFPII_					0	0	0			REV__ENSG00000181074|ENST00000641350|OR52N4	REV__ENSG00000181074|ENST00000641350|OR52N4	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3302612304688	2	540.328611	1078.64267	-1.5762	-0.00085169	4.4127	0.0023843	2.8364	0.0015326	540.3309156564876	138.68	4.2384	138.45	137.13	141.37	-0.22697					227	86	3	0	0	0	0.68424	1	13756	13756		21.96	1.9631	1	66382	+		26521	22216	21703	21730	29693	29693					0.1064926503922834
KTLHGEVILKE	11	Unmodified	_KTLHGEVILKE_					0	0	0			REV__nc|ENSG00000163681|Q14BN4-6|SLMAP	REV__nc|ENSG00000163681|Q14BN4-6|SLMAP	MULTI-MSMS	OvCa9_classI_Rep2	2	422.9189147949219	3	422.918722	1265.73434	-0.42407	-0.00017935	1.0922	0.0004619	0.6681	0.00028255	422.9191804294928	74.511	2.5984	72.54	72.114	74.713	-1.9711					157	49	5	0	0	0	0.55686	2	6094	6089;6094		48.602	12.074	1	1026300	+		26522	28968	21704	21731	29694;29695	29695					0.11209903665758247
KTLIKFPNP	9	Unmodified	_KTLIKFPNP_					0	0	0			REV__tr|A0A7D6VNQ0|A0A7D6VNQ0_9CLOTTripartitetricarboxylatetransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13840PE=4SV=1	REV__tr|A0A7D6VNQ0|A0A7D6VNQ0_9CLOTTripartitetricarboxylatetransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13840PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.3115234375	2	529.32386	1056.63317	-0.53117	-0.00028116	-2.4752	-0.0013102	-3.0063	-0.0015913	529.3220055560306	38.592	0.4422	38.592	38.394	38.836	0					21	9	4	0	0	0	0.027462	1	2188	2188		56.721	12.604	1	301250	+		26523	31199	21705	21732	29696	29696					0.10711496753697247
KTLKGKKAM	9	Unmodified	_KTLKGKKAM_					0	0	0		tr|A0A7D6ZG08|A0A7D6ZG08_9CLOTIron-containingalcoholdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20315PE=4SV=1	tr|A0A7D6ZG08|A0A7D6ZG08_9CLOTIron-containingalcoholdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20315PE=4SV=1	tr|A0A7D6ZG08|A0A7D6ZG08_9CLOTIron-containingalcoholdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20315PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	502.81396484375	2	502.817887	1003.62122	-5.7843	-0.0029085	-1.9464	-0.00097867	-7.7307	-0.0038871	502.8168335130942	153.97	1.772	152.96	152.62	154.39	-1.0076					110	37	4	0	0	0	0.69123	1	13272	13272		20.947	0.4651	1	860080			26524	35532	21706	21733	29697	29697					0.11955556738871564
KTLKGLTSIQ	10	Unmodified	_KTLKGLTSIQ_					0	0	0		ENSG00000039319|ENST00000505560|ZFYVE16;nc|ENSG00000039319|Q7Z3T8-3|ZFYVE16;ENST00000510995.1_1_5:79729945-79735859:+|nuORF;ENST00000512558.5_1_5:79729945-79747536:+|nuORF	ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	MULTI-MSMS	OvCa99_classI_Rep5	1	544.8369140625	2	544.837331	1087.66011	-0.48199	-0.0002626	0.38494	0.00020973	-0.097042	-5.2872E-05	544.8374346018711	24.192	0.39956	24.192	23.937	24.336	0					12	7	3	0	0	0	0.65849	1	427	427		35.152	0.97948	1	47357			26525	1104	21707	21734	29698	29698					0.11978560574243602
KTLKPVIT	8	Unmodified	_KTLKPVIT_					0	0	0		tr|A0A7D6ZW92|A0A7D6ZW92_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18080PE=4SV=1	tr|A0A7D6ZW92|A0A7D6ZW92_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18080PE=4SV=1	tr|A0A7D6ZW92|A0A7D6ZW92_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18080PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.7817687988281	2	450.299853	898.585153	0.60532	0.00027257	-3.6771	-0.0016558	-3.0718	-0.0013832	450.29803220770214	57.734	1.0084	57.734	57.522	58.53	0					48	23	4	0	0	0	0.028476	1	4866	4866		23.042	0	1	606100			26526	35832	21708	21735	29699	29699					0.13180422833659122
KTLLDGILL	9	Unmodified	_KTLLDGILL_					0	0	0		ENST00000486463.5_1_2:96687909-96693504:-|nuORF;nc|ENSG00000186281|Q6NUI2|GPAT2;ENSG00000186281|ENST00000434632|GPAT2;ENST00000484440.5_1_2:96688852-96698107:-|nuORF;nc|ENSG00000186281|Q6NUI2-3|GPAT2;ENST00000482704.1_1_2:96692637-96693504:-|nuORF;ENST00000471757.5_1_2:96691131-96693504:-|nuORF	ENST00000486463.5_1_2:96687909-96693504:-|nuORF	ENST00000486463.5_1_2:96687909-96693504:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	493.3175354003906	2	493.318243	984.621933	0.61838	0.00030506	-0.65148	-0.00032139	-0.033099	-1.6328E-05	493.31777001150425	123.45	1.971	123.21	122.89	124.86	-0.23193					97	39	4	0	0	0	0.26076	1	11975	11975		67.494	0	1	599460			26527	8327	21709	21736	29700	29700					0.12900674659567812
KTLLELLR	8	Unmodified	_KTLLELLR_					0	0	0			REV__ENST00000460295.1_1_3:38180152-38181542:+|nuORF	REV__ENST00000460295.1_1_3:38180152-38181542:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.2873229980469	2	493.32386	984.633166	0.86391	0.00042619	-1.3928	-0.00068711	-0.5289	-0.00026092	493.32309620047135	85.796	3.0776	83.149	82.66	85.737	-2.6463					77	61	2	0	0	0	0.028476	1	7426	7426		36.447	4.9169	1	22024	+		26528	26078	21710	21737	29701	29701					0.14023496753702602
KTLLKIKAE	9	Unmodified	_KTLLKIKAE_					0	0	0			REV__ENSG00000153879|ENST00000284000|CEBPG	REV__ENSG00000153879|ENST00000284000|CEBPG	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.2969970703125	2	522.344792	1042.67503	-0.30686	-0.00016028	0.021357	1.1156E-05	-0.2855	-0.00014913	522.3445188112026	52.665	0.6114	52.665	52.304	52.915	0					18	13	2	0	0	0	0.027462	1	4092	4092		13.454	0	1	207250	+		26529	20350	21711	21738	29702	29702					0.15540052442224805
KTLLLDYF	8	Unmodified	_KTLLLDYF_					0	0	0		tr|A0A7D7AGN9|A0A7D7AGN9_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_09420PE=4SV=1	tr|A0A7D7AGN9|A0A7D7AGN9_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_09420PE=4SV=1	tr|A0A7D7AGN9|A0A7D7AGN9_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_09420PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.2736511230469	2	506.789318	1011.56408	-1.4304	-0.00072494	0.73123	0.00037058	-0.69922	-0.00035436	506.7897356130987	54.052	0.79735	51.238	50.875	51.673	-2.8139					21	15	2	0	0	0	0.028476	1	3694	3694		19.36	0	1	25198			26530	36267	21712	21739	29703	29703					0.05876412734130554
KTLLRAPL	8	Unmodified	_KTLLRAPL_					0	0	0			REV__ENST00000512260.5_2_5:175603743-175612170:-|nuORF	REV__ENST00000512260.5_2_5:175603743-175612170:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.79669189453125	2	456.30547	910.596387	-0.9209	-0.00042021	0.85024	0.00038797	-0.07066	-3.2243E-05	456.30574051157436	106.81	0.68477	104.93	104.7	105.38	-1.8785					21	12	3	0	0	0	0.028476	1	9720	9720		55.504	4.1688	1	40080	+		26531	26967	21713	21740	29704	29704					0.13751244927777861
KTLLRAPL	8	Unmodified	_KTLLRAPL_					0	0	0			REV__ENST00000512260.5_2_5:175603743-175612170:-|nuORF	REV__ENST00000512260.5_2_5:175603743-175612170:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	456.30547	910.596387	0.71241	0.00032508	-0.70391	-0.0003212	0.0085034	3.8801E-06	456.305070973112	105.11	0.94262	104.68	104.46	105.4	-0.43642	-0.11846	-0.00032567	NaN	55.504	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41162	+		26532	26967	21713	21740							0.13751244927777861
KTLLRAPL	8	Unmodified	_KTLLRAPL_					0	0	0			REV__ENST00000512260.5_2_5:175603743-175612170:-|nuORF	REV__ENST00000512260.5_2_5:175603743-175612170:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	456.30547	910.596387	0.47761	0.00021793	-0.56616	-0.00025834	-0.088551	-4.0406E-05	456.3051296843978	106.13	0.73075	104.78	104.46	105.19	-1.3482	-0.016719	-0.00019995	NaN	55.504	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37051	+		26533	26967	21713	21740							0.13751244927777861
KTLLTAPLF	9	Unmodified	_KTLLTAPLF_					0	0	0		Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|35|1|sense	Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|35|1|sense	Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|35|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.2767028808594	2	502.312961	1002.61137	0.15139	7.6045E-05	0.014846	7.4572E-06	0.16624	8.3503E-05	502.3128724189496	84.206	1.1786	81.543	81.215	82.394	-2.6629					55	24	3	0	0	0	0.027462	1	7107	7107		31.53	10.583	1	258320			26534	14379	21714	21741	29705	29705					0.11016692005125606
KTLLWKKI	8	Unmodified	_KTLLWKKI_					0	0	0		ENSG00000154511|ENST00000370310|DIPK1A;nc|ENSG00000165716|Q5VUD6-2|DIPK1B;ENSG00000165716|ENST00000371692|DIPK1B	ENSG00000154511|ENST00000370310|DIPK1A	ENSG00000154511|ENST00000370310|DIPK1A	MULTI-MSMS	OvCa99_classI_Rep5	1	515.3458251953125	2	515.344595	1028.67464	-0.85738	-0.00044185	0.55563	0.00028634	-0.30175	-0.00015551	515.3446524877189	68.172	0.98376	68.172	67.916	68.9	0					51	23	3	0	0	0	0.47824	1	6424	6424		79.713	2.9384	1	4116200			26535	5743	21715	21742	29706	29706					0.16144677513034367
KTLQTATSL	9	Unmodified	_KTLQTATSL_					0	0	0		ENSG00000261652|ENST00000569691|PIERCE2	ENSG00000261652|ENST00000569691|PIERCE2	ENSG00000261652|ENST00000569691|PIERCE2	MULTI-SECPEP	OvCa9_classI_Rep2	2	482.26123046875	2	481.779482	961.544411	-1.0121	-0.00048763	-2.8739	-0.0013846	-3.8861	-0.0018722	481.779634286373	56.797	0.49547	53.993	53.721	54.216	-2.804					11	9	2	0	0	0	0.027462	1	4045	4045		21.96	3.6355	1	10513			26536	9503	21716	21743	29707	29707					0.06210036723382473
KTLRLATSY	9	Unmodified	_KTLRLATSY_					0	0	0		nc|ENSG00000164107|P61296-2|HAND2;ENSG00000113196|ENST00000231121|HAND1;ENSG00000164107|ENST00000359562|HAND2	nc|ENSG00000164107|P61296-2|HAND2	nc|ENSG00000164107|P61296-2|HAND2	MULTI-MSMS	OvCa99_classI_Rep5	1	527.3089599609375	2	526.808574	1051.60259	0.33046	0.00017409	-2.2	-0.001159	-1.8696	-0.00098491	526.8075062539502	160.94	1.1563	160.94	160.35	161.51	0					55	22	3	0	0	0	0.61365	1	18855	18855		30.318	2.2362	1	140160			26537	2953	21717	21744	29708	29708					0.07885718368675043
KTLRPRFK	8	Unmodified	_KTLRPRFK_					0	0	0		nc|ENSG00000122861|P00749-2|PLAU;ENSG00000122861|ENST00000372764|PLAU	nc|ENSG00000122861|P00749-2|PLAU	nc|ENSG00000122861|P00749-2|PLAU	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.2977294921875	2	523.335093	1044.65563	-0.96892	-0.00050707	3.4066	0.0017828	2.4377	0.0012757	523.3365543340042	117.36	0.88959	115.99	115.67	116.56	-1.3645					36	16	3	0	0	0	0.028476	1	11036	11036		16.473	0	1	51451			26538	3561	21718	21745	29709	29709					0.13509140941982878
KTLRRLFDI	9	Unmodified	_KTLRRLFDI_					0	0	0		ENST00000609118.1_1_1:111505930-111506428:+|nuORF	ENST00000609118.1_1_1:111505930-111506428:+|nuORF	ENST00000609118.1_1_1:111505930-111506428:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.2799072265625	2	581.358765	1160.70298	-0.97434	-0.00056644	3.7863	0.0022012	2.8119	0.0016347	581.360870212743	42.351	0.59724	42.351	42.199	42.796	0					17	13	2	0	0	0	0.027462	1	2714	2714		24.519	6.1948	1	166080			26539	14300	21719	21746	29710	29710					0.12905375422337784
KTLSDVFVSST	11	Unmodified	_KTLSDVFVSST_					0	0	0			REV__nc|ENSG00000196924|P21333-2|FLNA	REV__nc|ENSG00000196924|P21333-2|FLNA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	592.3011474609375	2	592.313886	1182.61322	-0.47684	-0.00028244	4.2021	0.0024889	3.7252	0.0022065	592.316424962714	82.164	0.29117	79.481	79.393	79.684	-2.6829					8	5	2	0	0	0	0.025551	1	6772	6772		37.508	13.985	1	32874	+		26540	22875	21720	21747	29711	29711					0.029216562324108963
KTLSFNKI	8	Unmodified	_KTLSFNKI_					0	0	0			REV__ENSG00000177511|ENST00000324000|ST8SIA3	REV__ENSG00000177511|ENST00000324000|ST8SIA3	MULTI-MSMS	OvCa9_classI_Rep2	2	475.78704833984375	2	475.78711	949.559667	-1.1235	-0.00053453	1.082	0.00051482	-0.041421	-1.9707E-05	475.7874263780674	139.39	1.0332	139.16	138.81	139.84	-0.22696					43	20	3	0	0	0	0.745	1	13944	13944		29.15	4.9468	1	86387	+		26541	22012	21721	21748	29712	29712					0.08286948311229025
KTLSTPYIEIK	11	Unmodified	_KTLSTPYIEIK_					0	0	0			REV__ENSG00000171234|ENST00000305231|UGT2B7	REV__ENSG00000171234|ENST00000305231|UGT2B7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	430.7594909667969	3	431.586861	1291.73875	0.34713	0.00014982	3.701	0.0015973	4.0481	0.0017471	431.5886633824912	69.296	0.58714	65.815	65.614	66.201	-3.4812					16	11	2	0	0	0	0.025908	1	5189	5189		11.932	2.2862	1	21920	+		26542	21604	21722	21749	29713	29713					0.10455368088628347
KTLSTVKI	8	Unmodified	_KTLSTVKI_					0	0	0		tr|A0A7D6VPU8|A0A7D6VPU8_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20450PE=4SV=1	tr|A0A7D6VPU8|A0A7D6VPU8_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20450PE=4SV=1	tr|A0A7D6VPU8|A0A7D6VPU8_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20450PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	445.2870788574219	2	445.289485	888.564418	-2.8277	-0.0012591	-0.24741	-0.00011017	-3.0751	-0.0013693	445.2892592248726	144.41	1.3401	143.44	143.15	144.49	-0.97301					68	26	4	0	0	0	0.74038	1	12055	12055		12.207	0.69583	1	266430			26543	34800	21723	21750	29714	29714					0.11567832453999927
KTLSTVKI	8	Unmodified	_KTLSTVKI_					0	0	0		tr|A0A7D6VPU8|A0A7D6VPU8_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20450PE=4SV=1	tr|A0A7D6VPU8|A0A7D6VPU8_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20450PE=4SV=1	tr|A0A7D6VPU8|A0A7D6VPU8_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20450PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	445.289485	888.564418	0.078733	3.5059E-05	-3.1359	-0.0013964	-3.0572	-0.0013613	445.28800561734323	144.05	1.1861	143.82	143.25	144.44	-0.22697	0.19185	-0.0006219	NaN	12.207	65	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219310			26544	34800	21723	21750							0.11567832453999927
KTLTLKKGNF	10	Unmodified	_KTLTLKKGNF_					0	0	0			REV__tr|A0A553SJY7|A0A553SJY7_NIACICelldivisionproteinFtsAOS=NialliacirculansOX=1397GN=CEQ21_17585PE=4SV=1	REV__tr|A0A553SJY7|A0A553SJY7_NIACICelldivisionproteinFtsAOS=NialliacirculansOX=1397GN=CEQ21_17585PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.3492431640625	2	575.353148	1148.69174	-5.9938	-0.0034485	2.2431	0.0012906	-3.7507	-0.002158	575.3543564636343	157.84	0.77951	156.29	156.09	156.87	-1.545					44	22	3	0	0	0	0.762	1	15620	15620		23.523	1.5628	1	71149	+		26545	30057	21724	21751	29715	29715					0.1233455332817357
KTMGRENPGDT	11	Unmodified	_KTMGRENPGDT_					0	0	0		nc|ENSG00000186376|P51815-2|ZNF75D;ENSG00000186376|ENST00000370766|ZNF75D	nc|ENSG00000186376|P51815-2|ZNF75D	nc|ENSG00000186376|P51815-2|ZNF75D	MULTI-SECPEP	OvCa99_classI_Rep5	1	602.3392944335938	2	603.282594	1204.55064	0.20544	0.00012394	2.9211	0.0017622	3.1265	0.0018862	603.2842118948637	52.805	1.3014	52.805	51.871	53.172	0					50	29	2	0	0	0	0.025701	1	4126	4126		11.636	0	1	628030			26546	8333	21725	21752	29716	29716					-0.043458131074203266
KTMLVTVLN	9	Unmodified	_KTMLVTVLN_					0	0	0		ENST00000566986.1_1_17:80251923-80252148:+|nuORF	ENST00000566986.1_1_17:80251923-80252148:+|nuORF	ENST00000566986.1_1_17:80251923-80252148:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.80322265625	2	509.801903	1017.58925	2.0238	0.0010317	1.6092	0.00082039	3.633	0.0018521	509.80258654056354	136.53	4.9049	134.99	133.61	138.51	-1.5437					290	101	5	0	0	0	0.64427	1	13264	13264		26.693	1.1189	1	173450			26547	13854	21726	21753	29717	29717					0.08116144265056846
KTMQVCEMLP	10	Unmodified	_KTMQVCEMLP_					0	0	0			REV__ENST00000466134.5_1_21:45735979-45739299:+|nuORF	REV__ENST00000466134.5_1_21:45735979-45739299:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.8167114257812	2	590.282163	1178.54977	0.13572	8.0111E-05	-3.3847	-0.0019979	-3.249	-0.0019178	590.2806627315498	70.828	0.19316	70.828	70.761	70.954	0					6	4	2	0	0	0	0.026674	1	6820	6820		40.058	0	1	233680	+		26548	19762	21727	21754	29718	29718					-0.03236067072316473
KTNEVFPDQ	9	Unmodified	_KTNEVFPDQ_					0	0	0			REV__ENSG00000160868|ENST00000651514|CYP3A4	REV__ENSG00000160868|ENST00000651514|CYP3A4	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.3005981445312	2	539.264196	1076.51384	-0.042517	-2.2928E-05	3.7602	0.0020278	3.7177	0.0020048	539.2661328059343	69.203	0.49394	69.203	68.939	69.433	0					19	11	2	0	0	0	0.027462	1	6545	6545		31.53	0	1	396570	+		26549	20678	21728	21755	29719	29719					-0.021357416616638147
KTNLMQLFE	9	Oxidation (M)	_KTNLM(Oxidation (M))QLFE_		KTNLM(1)QLFE		KTNLM(58)QLFE	0	0	1		ENST00000507004.1_1_5:43298575-43313480:-|nuORF;ENST00000507293.1_1_5:43298575-43313499:-|nuORF;ENSG00000112972|ENST00000325110|HMGCS1;ENST00000400943.3_1_1:240136137-240136869:+|nuORF	ENST00000507004.1_1_5:43298575-43313480:-|nuORF	ENST00000507004.1_1_5:43298575-43313480:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	570.7936401367188	2	570.291899	1138.56925	1.3077	0.00074579	-1.964	-0.00112	-0.65623	-0.00037424	570.29065491434	119.59	0.85052	119.59	119.29	120.14	0					52	20	4	0	0	0	0.34132	1	13713	13713		58.23	7.0372	1	985650			26550	2940	21729	21756	29720	29720		92			0.0055034853444340115
KTNLRIQPT	9	Unmodified	_KTNLRIQPT_					0	0	0			REV__nc|ENSG00000060749|Q2KHR3|QSER1	REV__nc|ENSG00000060749|Q2KHR3|QSER1	MULTI-MSMS	OvCa9_classI_Rep2	2	535.8217163085938	2	535.819473	1069.62439	-1.4267	-0.00076446	0.97666	0.00052332	-0.45004	-0.00024114	535.8198506740164	57.839	1.5468	55.047	54.477	56.024	-2.792					83	30	3	0	0	0	0.51177	1	4151	4151		41.427	1.3684	1	571980	+		26551	16742	21730	21757	29721	29721					0.09236523117237994
KTNLRIQPT	9	Unmodified	_KTNLRIQPT_					0	0	0			REV__nc|ENSG00000060749|Q2KHR3|QSER1	REV__nc|ENSG00000060749|Q2KHR3|QSER1	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.822265625	2	535.819473	1069.62439	-1.04	-0.00055725	0.095876	5.1372E-05	-0.94411	-0.00050587	535.8194085007677	58.425	1.7438	55.033	54.701	56.445	-3.392					92	34	5	0	0	0	0.45842	1	3865	3865		46.457	5.0302	1	1693300	+		26552	16742	21730	21757	29722	29722					0.09236523117237994
KTNLSTEFSD	10	Unmodified	_KTNLSTEFSD_					0	0	0		tr|A0A7D7A020|A0A7D7A020_9CLOTAminoacidpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08585PE=4SV=1	tr|A0A7D7A020|A0A7D7A020_9CLOTAminoacidpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08585PE=4SV=1	tr|A0A7D7A020|A0A7D7A020_9CLOTAminoacidpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08585PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.7984619140625	2	571.272218	1140.52988	0.84935	0.00048521	2.1019	0.0012007	2.9512	0.001686	571.2732198528677	142.39	1.5314	142.39	141.64	143.17	0					65	30	3	0	0	0	0.026994	1	16730	16730		19.104	0	1	933830			26553	35983	21731	21758	29723	29723					-0.03476080215409638
KTNPGLTRAI	10	Unmodified	_KTNPGLTRAI_					0	0	0		tr|A0A553SLF5|A0A553SLF5_NIACITerDfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20535PE=4SV=1	tr|A0A553SLF5|A0A553SLF5_NIACITerDfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20535PE=4SV=1	tr|A0A553SLF5|A0A553SLF5_NIACITerDfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20535PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	535.8218994140625	2	535.819473	1069.62439	-1.4267	-0.00076446	0.97666	0.00052332	-0.45004	-0.00024114	535.8198506740164	57.839	1.5468	55.047	54.477	56.024	-2.792					83	30	3	0	0	0	0.47142	1	4139	4139		58.23	8.6939	1	571980			26554	33718	21732	21759	29724	29724					0.09236523117237994
KTNPGLTRAI	10	Unmodified	_KTNPGLTRAI_					0	0	0		tr|A0A553SLF5|A0A553SLF5_NIACITerDfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20535PE=4SV=1	tr|A0A553SLF5|A0A553SLF5_NIACITerDfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20535PE=4SV=1	tr|A0A553SLF5|A0A553SLF5_NIACITerDfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20535PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.8211059570312	2	535.819473	1069.62439	-1.04	-0.00055725	0.095876	5.1372E-05	-0.94411	-0.00050587	535.8194085007677	58.425	1.7438	55.033	54.701	56.445	-3.392					92	34	5	0	0	0	0.58067	1	3853	3853		44.377	0.26039	1	1693300			26555	33718	21732	21759	29725	29725					0.09236523117237994
KTNPRQMTME	10	Unmodified	_KTNPRQMTME_					0	0	0		nc|ENSG00000095794|Q03060-32|CREM;nc|ENSG00000095794|Q03060-26|CREM;nc|ENSG00000095794|Q03060-21|CREM;ENSG00000095794|ENST00000685392|CREM;nc|ENSG00000095794|Q03060-6|CREM;nc|ENSG00000095794|Q03060-19|CREM;nc|ENSG00000095794|Q03060-17|CREM;nc|ENSG00000095794|Q03060-2|CREM;nc|ENSG00000095794|Q03060-20|CREM;nc|ENSG00000095794|Q03060-16|CREM;nc|ENSG00000095794|Q03060-15|CREM;nc|ENSG00000095794|Q03060-1|CREM;ENST00000482646.5_1_10:35426742-35437470:+|nuORF	nc|ENSG00000095794|Q03060-32|CREM;ENST00000482646.5_1_10:35426742-35437470:+|nuORF	nc|ENSG00000095794|Q03060-32|CREM	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.7040100097656	3	412.533885	1234.57983	0.98285	0.00040546	0.51395	0.00021202	1.4968	0.00061748	412.86841123691397	31.484	0.14876	31.484	31.361	31.509	0					4	2	2	0	0	0	0.027006	1	1289	1289		30.569	10.254	1	9795.5			26556	1940;12575	21733	21760	29726	29726					-0.028079920827622118
KTNSLIFVVK	10	Unmodified	_KTNSLIFVVK_					0	0	0			REV__tr|A0A7D6ZNS0|A0A7D6ZNS0_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17500PE=4SV=1	REV__tr|A0A7D6ZNS0|A0A7D6ZNS0_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17500PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.8521118164062	2	574.855524	1147.69649	-0.63338	-0.0003641	-0.22829	-0.00013123	-0.86167	-0.00049533	574.8554273625299	89.126	1.0849	86.524	86.136	87.221	-2.6027					38	21	2	0	0	0	0.02706	1	7656	7656		30.318	13.845	1	46713	+		26557	32122	21734	21761	29727	29727					0.12855437470943798
KTNVKFLAI	9	Unmodified	_KTNVKFLAI_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3232421875	2	517.32386	1032.63317	0.31361	0.00016224	-0.22893	-0.00011843	0.084683	4.3809E-05	517.3237178370956	82.824	2.9871	81.225	80.854	83.841	-1.5988					110	59	2	0	0	0	0.029147	7	7072	7067;7072;7078;7085;7091;7104;7110		136.27	33.479	1	2459000			26558	6867	21735	21762	29728;29729;29730;29731;29732;29733;29734	29729					0.11815496753706611
KTNVKFLAI	9	Unmodified	_KTNVKFLAI_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OvCa9_classI_Rep3	3	517.3255615234375	2	517.32386	1032.63317	-0.49455	-0.00025584	2.8399	0.0014691	2.3453	0.0012133	517.324549544396	83.847	3.2794	81.586	81.067	84.346	-2.261					206	67	6	0	0	0	0.012051	10	4829	4811;4817;4823;4829;4835;4849;4855;4862;4880;4886		162.25	49.842	1	2886700			26559	6867	21735	21762	29735;29736;29737;29738;29739;29740;29741;29742;29743;29744	29738					0.11815496753706611
KTPICVAQP	9	Unmodified	_KTPICVAQP_					0	0	0			REV__ENSG00000184344|ENST00000329913|GDF3	REV__ENSG00000184344|ENST00000329913|GDF3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.74652099609375	2	478.76532	955.516088	1.1448	0.00054808	1.6051	0.00076846	2.7499	0.0013165	478.76586412486836	36.782	1.1471	33.889	33.295	34.442	-2.8925					36	22	3	0	0	0	0.027462	1	1331	1331		26.693	1.1189	1	42797	+		26560	22423	21736	21763	29745	29745					0.03655015542437923
KTPICVAQP	9	Unmodified	_KTPICVAQP_					0	0	0			REV__ENSG00000184344|ENST00000329913|GDF3	REV__ENSG00000184344|ENST00000329913|GDF3	MULTI-MATCH	OvCa99_classI_Rep5	1		2	478.76532	955.516088	-0.60821	-0.00029119	3.4033	0.0016294	2.7951	0.0013382	478.7674153423844	33.945	0.28875	33.945	33.824	34.113	0	0.027779	0.001034	NaN	34.173	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50884	+		26561	22423	21736	21763							0.03655015542437923
KTPILAINPID	11	Unmodified	_KTPILAINPID_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OvCa9_classI_Rep2	2	597.855712890625	2	597.858264	1193.70197	-3.1766	-0.0018991	0.037639	2.2503E-05	-3.1389	-0.0018766	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.70142	1	15002	15002		29.17	5.6474	1	436470			26562	5793;36288	21737	21764	29746	29746					0.11287116262747077
KTPKADAVFI	10	Unmodified	_KTPKADAVFI_					0	0	0			REV__tr|A0A7D6VSS4|A0A7D6VSS4_9CLOTErythromycinesterasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08055PE=4SV=1	REV__tr|A0A7D6VSS4|A0A7D6VSS4_9CLOTErythromycinesterasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08055PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3162841796875	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.62299	1	14187	14187		39.253	2.0937	1	202430	+		26563	31532	21738	21765	29747	29747					0.08222889028456848
KTPKLLSLS	9	Unmodified	_KTPKLLSLS_					0	0	0			REV__tr|A0A553SIV2|A0A553SIV2_NIACIFlagellarproteinFlgNOS=NialliacirculansOX=1397GN=CEQ21_15570PE=4SV=1	REV__tr|A0A553SIV2|A0A553SIV2_NIACIFlagellarproteinFlgNOS=NialliacirculansOX=1397GN=CEQ21_15570PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.74737548828125	2	493.815867	985.617182	-0.044476	-2.1963E-05	-1.4455	-0.0007138	-1.49	-0.00073576	493.8152118028449	64.896	0.40042	64.896	64.672	65.072	0					15	9	2	0	0	0	0.027462	1	5917	5917		14.865	0	1	517790	+		26564	29933	21739	21766	29748	29748					0.12379790516808953
KTPKLWRLFRN	11	Unmodified	_KTPKLWRLFRN_					0	0	0		ENST00000339758.7_1_10:69571379-69597705:-|nuORF	ENST00000339758.7_1_10:69571379-69597705:-|nuORF	ENST00000339758.7_1_10:69571379-69597705:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	486.9599304199219	3	486.961256	1457.86194	-4.7825	-0.0023289	0.04792	2.3335E-05	-4.7346	-0.0023056	486.9610953135575	160.39	2.6298	160.16	159.25	161.88	-0.22696					128	53	4	0	0	0	0.72552	1	16319	16319		8.7993	0.99479	1	96650			26565	10554	21740	21767	29749	29749					0.15132089050416653
KTPKPIPAIL	10	Unmodified	_KTPKPIPAIL_					0	0	0			REV__tr|A0A553SFR3|A0A553SFR3_NIACIFAAhydrolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09365PE=3SV=1	REV__tr|A0A553SFR3|A0A553SFR3_NIACIFAAhydrolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09365PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.7781982421875	2	539.35516	1076.69577	-0.97965	-0.00052838	-1.8698	-0.0010085	-2.8494	-0.0015368	539.3540285337322	63.749	1.208	60.274	59.772	60.98	-3.475					49	24	3	0	0	0	0.027241	1	4510	4510		18.262	11.527	1	108220	+		26566	29612	21741	21768	29750	29750					0.16048642821874637
KTPLRHKIM	9	Unmodified	_KTPLRHKIM_					0	0	0		chr11:76194844-76195255|173|10.36|0.61|4.07|-|2|TE_info:MLT1C,MLT1C_dup12967,ERVL-MaLR,LTR,donor,+,76195255,76195657|WNT11,None|5	chr11:76194844-76195255|173|10.36|0.61|4.07|-|2|TE_info:MLT1C,MLT1C_dup12967,ERVL-MaLR,LTR,donor,+,76195255,76195657|WNT11,None|5	chr11:76194844-76195255|173|10.36|0.61|4.07|-|2|TE_info:MLT1C,MLT1C_dup12967,ERVL-MaLR,LTR,donor,+,76195255,76195657|WNT11,None|5	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3441772460938	2	562.342061	1122.66957	1.2434	0.00069921	1.201	0.00067537	2.4444	0.0013746	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.67509	1	14116	14116		23.042	0	1	683710			26567	306	21742	21769	29751	29751					0.11314050378769025
KTPLSSKLHL	10	Unmodified	_KTPLSSKLHL_					0	0	0			REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19	REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19	MULTI-MSMS	OvCa9_classI_Rep3	3	562.3432006835938	2	562.345323	1122.67609	-2.9015	-0.0016316	-0.70711	-0.00039764	-3.6086	-0.0020293	562.3448419475409	142.33	4.504	141.32	140	144.5	-1.0106					205	90	3	0	0	0	0.73378	1	11941	11941		26.693	4.733	1	106680	+		26568	16127	21743	21770	29752	29752					0.11966266811123205
KTPNGAPKPD	10	Unmodified	_KTPNGAPKPD_					0	0	0			REV__ENSG00000117620|ENST00000533028|SLC35A3	REV__ENSG00000117620|ENST00000533028|SLC35A3	MULTI-SECPEP	OvCa9_classI_Rep2	2	512.8104248046875	2	512.774731	1023.53491	-1.8102	-0.00092824	2.0769	0.001065	0.26666	0.00013674	512.7755972961685	62.656	0.26122	59.912	59.795	60.056	-2.7444					6	4	2	0	0	0	0.026573	1	4702	4702		61.691	8.7546	1	22570	+		26569	18361	21744	21771	29753	29753					0.024082684378413433
KTPNVKVPL	9	Unmodified	_KTPNVKVPL_					0	0	0			REV__ENST00000533321.1_1_11:57509317-57509464:+|nuORF	REV__ENST00000533321.1_1_11:57509317-57509464:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3159484863281	2	498.316035	994.617516	-0.044391	-2.2121E-05	-0.21861	-0.00010894	-0.263	-0.00013106	498.3157300992715	110.05	1.7303	109.88	109.41	111.14	-0.17236					105	34	7	0	0	0	0.11471	1	10359	10359		93.195	27.392	1	1087000	+		26570	23243	21745	21772	29754	29754					0.11999210236660929
KTPNVKVPL	9	Unmodified	_KTPNVKVPL_					0	0	0			REV__ENST00000533321.1_1_11:57509317-57509464:+|nuORF	REV__ENST00000533321.1_1_11:57509317-57509464:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	498.31512451171875	2	498.316035	994.617516	0.7807	0.00038904	-1.1222	-0.00055921	-0.3415	-0.00017018	498.31525557924255	111.08	1.6999	109.97	109.44	111.14	-1.1038					98	33	7	0	0	0	0.16562	1	8044	8044		82.241	18.033	1	1109600	+		26571	23243	21745	21772	29755	29755					0.11999210236660929
KTPPRRLP	8	Unmodified	_KTPPRRLP_					0	0	0		nc|ENSG00000112983|Q9H0E9-3|BRD8;nc|ENSG00000112983|Q9H0E9-4|BRD8;nc|ENSG00000112983|Q9H0E9-2|BRD8;ENST00000471892.6_1_5:137503584-137506561:-|nuORF;ENSG00000112983|ENST00000254900|BRD8	nc|ENSG00000112983|Q9H0E9-3|BRD8	nc|ENSG00000112983|Q9H0E9-3|BRD8	MULTI-SECPEP	OvCa9_classI_Rep2	2	482.26123046875	2	482.806168	963.597784	-0.90715	-0.00043798	-0.15986	-7.7183E-05	-1.067	-0.00051516	482.8061452733024	57.011	0.24874	54.219	54.129	54.377	-2.792					5	4	2	0	0	0	0.028476	1	4045	4045		16.473	4.9621	1	5913.8			26572	14964	21746	21773	29756	29756					0.11452879016553652
KTPPWKKN	8	Unmodified	_KTPPWKKN_					0	0	0			REV__ENST00000497498.1_1_7:26242571-26246069:+|nuORF	REV__ENST00000497498.1_1_7:26242571-26246069:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.2688903808594	2	499.792727	997.5709	-0.76934	-0.00038451	1.0914	0.00054547	0.32205	0.00016096	499.79310826081934	103.62	0.94107	101.5	101.17	102.11	-2.1192					30	17	2	0	0	0	0.028476	1	9394	9394		45.952	5.3793	1	69484	+		26573	24601	21747	21774	29757	29757					0.07201770405356456
KTPQLPLSH	9	Unmodified	_KTPQLPLSH_					0	0	0		ENST00000557868.1_1_15:48449979-48451083:-|nuORF	ENST00000557868.1_1_15:48449979-48451083:-|nuORF	ENST00000557868.1_1_15:48449979-48451083:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.276123046875	2	510.795466	1019.57638	-1.2382	-0.00063245	3.4536	0.0017641	2.2154	0.0011316	511.2982553193108	44.661	1.7981	41.623	41.007	42.805	-3.0385					48	34	2	0	0	0	0.027426	1	2325	2325		39.253	5.7372	1	41847			26574	13689	21748	21775	29758	29758					0.06737449197191836
KTPSKSPLK	9	Unmodified	_KTPSKSPLK_					0	0	0			REV__nc|ENSG00000167566|Q9HCH0-2|NCKAP5L	REV__nc|ENSG00000167566|Q9HCH0-2|NCKAP5L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.2703552246094	2	493.305667	984.596781	-0.30846	-0.00015217	-1.0044	-0.00049547	-1.3128	-0.00064763	493.30516855404767	101.44	0.88841	99.171	98.929	99.817	-2.2665					20	17	2	0	0	0	0.027462	1	9076	9076		36.447	0	1	49954	+		26575	21288	21749	21776	29759	29759					0.10386619856990364
KTPTKILW	8	Unmodified	_KTPTKILW_					0	0	0			REV__ENSG00000175895|ENST00000315367|PLEKHF2	REV__ENSG00000175895|ENST00000315367|PLEKHF2	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.3182678222656	2	493.805303	985.596052	-0.23966	-0.00011835	0.020296	1.0022E-05	-0.21937	-0.00010832	493.8053481578894	104.22	1.1378	103.64	103.23	104.36	-0.57639					56	22	3	0	0	0	0.028476	1	9610	9610		40.778	12.896	1	201540	+		26576	21921	21750	21777	29760	29760					0.10267825207949954
KTPYDPRW	8	Unmodified	_KTPYDPRW_					0	0	0		nc|ENSG00000278540|Q13085-3|ACACA;nc|ENSG00000278540|Q13085-2|ACACA;nc|ENSG00000278540|Q13085|ACACA;ENSG00000278540|ENST00000616317|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	nc|ENSG00000278540|Q13085-3|ACACA	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.8094482421875	2	531.771991	1061.52943	0.54381	0.00028918	2.4604	0.0013084	3.0042	0.0015975	531.7729204390355	74.231	0.15044	74.231	74.135	74.286	0					5	3	2	0	0	0	0.028476	1	7327	7327		42.396	12.555	1	223010			26577	9590	21751	21778	29761	29761					0.0011258964605076471
KTQIQNVSK	9	Unmodified	_KTQIQNVSK_					0	0	0		nc|ENSG00000172752|A8TX70-2|COL6A5;ENSG00000172752|ENST00000373157|COL6A5;nc|ENSG00000172752|A8TX70|COL6A5	nc|ENSG00000172752|A8TX70-2|COL6A5	nc|ENSG00000172752|A8TX70-2|COL6A5	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3035888671875	2	523.303655	1044.59276	0.92494	0.00048402	-1.1511	-0.00060237	-0.22615	-0.00011835	523.3029320659484	30.44	0.93634	27.73	27.557	28.494	-2.7097					40	18	3	0	0	0	0.37182	2	864	827;864		54.722	6.7628	1	187740			26578	7316	21752	21779	29762;29763	29763					0.07224530363282611
KTQKGKLNIN	10	Unmodified	_KTQKGKLNIN_					0	0	0			REV__L1PA7_dup9238|chr10:48372221-48377370:+|1.4943041569802586|0.2795461482764699|2.42|429.0|7|1|sense	REV__L1PA7_dup9238|chr10:48372221-48377370:+|1.4943041569802586|0.2795461482764699|2.42|429.0|7|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.8294677734375	2	572.345855	1142.67716	-0.48442	-0.00027726	0.74929	0.00042885	0.26487	0.0001516	572.3461543986476	53.153	0.56014	53.153	52.915	53.475	0					20	12	2	0	0	0	0.026931	1	4183	4183		23.523	0	1	609090	+		26579	28575	21753	21780	29764	29764					0.11152481180033647
KTQMEVIY	8	Unmodified	_KTQMEVIY_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.2782897949219	2	506.26261	1010.51067	3.3503	0.0016961	-1.4253	-0.00072159	1.925	0.00097453	506.26176461744683	88.109	0.54472	88.109	87.754	88.298	0					18	12	2	0	0	0	0.028476	1	9335	9335		29.15	4.9468	1	542770	+		26580	28942;32737	21754	21781	29765	29765					0.0058329195995838745
KTQRAPKAF	9	Unmodified	_KTQRAPKAF_					0	0	0		chrX:118419411-118432781|190|10.3|0.42|4.6|+|0|TE_info:L1PB1,L1PB1_dup8380,L1,LINE,donor,-,118415804,118419411|None,WDR44|46	chrX:118419411-118432781|190|10.3|0.42|4.6|+|0|TE_info:L1PB1,L1PB1_dup8380,L1,LINE,donor,-,118415804,118419411|None,WDR44|46	chrX:118419411-118432781|190|10.3|0.42|4.6|+|0|TE_info:L1PB1,L1PB1_dup8380,L1,LINE,donor,-,118415804,118419411|None,WDR44|46	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.3163452148438	2	523.808908	1045.60326	-1.4895	-0.00078019	3.5749	0.0018726	2.0854	0.0010924	523.8105972081506	34.463	0.23461	34.463	34.351	34.586	0					9	4	3	0	0	0	0.027462	1	1664	1664		19.104	0	1	168350			26581	562	21755	21782	29766	29766					0.08228557808342885
KTQTHLLAH	9	Unmodified	_KTQTHLLAH_					0	0	0			REV__ENSG00000118873|ENST00000358951|RAB3GAP2	REV__ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-MSMS	OvCa9_classI_Rep2	2	524.798095703125	2	524.79854	1047.58253	0.25296	0.00013275	-0.57516	-0.00030184	-0.3222	-0.00016909	524.7981408684497	40.677	1.8723	37.968	37.551	39.423	-2.7097					98	37	4	0	0	0	0.50149	1	2094	2094		42.396	1.8235	1	622190	+		26582	18418	21756	21783	29767	29767					0.06063967428713113
KTQTIIREG	9	Unmodified	_KTQTIIREG_					0	0	0			REV__nc|ENSG00000114302|P13861-2|PRKAR2A	REV__nc|ENSG00000114302|P13861-2|PRKAR2A	MULTI-MSMS	OvCa99_classI_Rep5	1	523.3035888671875	2	523.303655	1044.59276	-1.2004	-0.00062819	0.32413	0.00016962	-0.87631	-0.00045857	523.3038645088309	26.368	1.4	26.368	26.142	27.542	0					63	27	4	0	0	0	0.2077	1	694	694		75.043	6.2565	1	3642300	+		26583	28806	21757	21784	29768	29768					0.07224530363282611
KTRDPCSH	8	Unmodified	_KTRDPCSH_					0	0	0		SVA_B_dup173|chr4:48185818-48187447:+|1.7426897649738875|0.0421009603888101|5.37|413.0|10|1|sense	SVA_B_dup173|chr4:48185818-48187447:+|1.7426897649738875|0.0421009603888101|5.37|413.0|10|1|sense	SVA_B_dup173|chr4:48185818-48187447:+|1.7426897649738875|0.0421009603888101|5.37|413.0|10|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.7991027832031	2	472.224351	942.434149	0.84212	0.00039767	3.1247	0.0014756	3.9668	0.0018732	472.225659524099	116.25	0.91151	114.88	114.6	115.51	-1.3645					26	17	2	0	0	0	0.028476	1	10901	10901		20.947	0	1	48693			26584	32929	21758	21785	29769	29769					-0.039370868166543005
KTRGRFYKRVW	11	Unmodified	_KTRGRFYKRVW_					0	0	0			REV__FAM111B|p.E418Gfs*12|1|0.09|ENSG00000189057|chr11:59125346-59125347|-/G|frameshift_variant	REV__FAM111B|p.E418Gfs*12|1|0.09|ENSG00000189057|chr11:59125346-59125347|-/G|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.2872619628906	3	499.624755	1495.85244	-0.47369	-0.00023667	-0.079013	-3.9477E-05	-0.5527	-0.00027614	499.62466720298744	41.308	0.44579	41.308	41.104	41.55	0					16	9	2	0	0	0	0.026324	1	2586	2586		21.78	7.0868	1	230090	+		26585	28124	21759	21786	29770	29770					0.12434320764896256
KTRICWKY	8	Unmodified	_KTRICWKY_					0	0	0		ENST00000535589.3_1_2:114648352-114674470:+|nuORF;ENST00000263238.6_1_2:114647705-114674470:+|nuORF;ENST00000415792.5_1_2:114647705-114688890:+|nuORF;ENST00000446821.5_1_2:114647705-114684940:+|nuORF	ENST00000535589.3_1_2:114648352-114674470:+|nuORF	ENST00000535589.3_1_2:114648352-114674470:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.2890014648438	2	549.299862	1096.58517	-1.192	-0.00065477	4.3432	0.0023857	3.1512	0.0017309	549.3020396094744	42.589	1.2886	39.609	39.011	40.3	-2.9804					42	24	2	0	0	0	0.028476	1	1929	1929		30.504	21.681	1	97109			26586	9908	21760	21787	29771	29771					0.04074099562012634
KTRICWKY	8	Unmodified	_KTRICWKY_					0	0	0		ENST00000535589.3_1_2:114648352-114674470:+|nuORF;ENST00000263238.6_1_2:114647705-114674470:+|nuORF;ENST00000415792.5_1_2:114647705-114688890:+|nuORF;ENST00000446821.5_1_2:114647705-114684940:+|nuORF	ENST00000535589.3_1_2:114648352-114674470:+|nuORF	ENST00000535589.3_1_2:114648352-114674470:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	549.299862	1096.58517	1.2405	0.00068143	2.0665	0.0011351	3.307	0.0018166	549.3008505444081	42.352	0.88827	39.642	39.177	40.065	-2.7097	0.01652	-0.0018549	NaN	30.504	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20822			26587	9908	21760	21787							0.04074099562012634
KTRKLRGH	8	Unmodified	_KTRKLRGH_					0	0	0		RPL27A-EEF1G|1|fusion;ENST00000526562.5_1_11:8704757-8706293:+|nuORF;ENSG00000166441|ENST00000314138|RPL27A	RPL27A-EEF1G|1|fusion	RPL27A-EEF1G|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.2688903808594	2	498.314692	994.614831	-0.66845	-0.0003331	3.0307	0.0015102	2.3622	0.0011771	498.31605974986115	104.27	1.2513	102.15	101.75	103	-2.1192					45	23	3	0	0	0	0.028476	1	9394	9394		25.45	1.2474	1	91705			26588	32789	21761	21788	29772	29772					0.11730799622375798
KTRLQPPAAN	10	Unmodified	_KTRLQPPAAN_					0	0	0		ENST00000281938.6_1_12:119616657-119616711:+|nuORF	ENST00000281938.6_1_12:119616657-119616711:+|nuORF	ENST00000281938.6_1_12:119616657-119616711:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	548.316650390625	2	548.317097	1094.61964	-0.2708	-0.00014849	0.43643	0.0002393	0.16562	9.0814E-05	548.3170454569442	74.409	2.3514	72.438	71.221	73.572	-1.9711					105	44	4	0	0	0	0.55359	1	6097	6097		47.657	12.039	1	413940			26589	10051	21762	21789	29773	29773					0.07611638974458401
KTRLVYER	8	Unmodified	_KTRLVYER_					0	0	0		ENSG00000121101|ENST00000349033|TEX14;nc|ENSG00000121101|Q8IWB6-2|TEX14;nc|ENSG00000121101|Q8IWB6|TEX14;TEX14|p.S1106Rfs*18|1|0.46|ENSG00000121101|chr17:58579723-58579724|-/AATCAGAGACTTTTTCACATACTTCATGTGT|frameshift_variant	ENSG00000121101|ENST00000349033|TEX14	ENSG00000121101|ENST00000349033|TEX14	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.290771484375	2	532.81419	1063.61383	2.8035	0.0014938	-1.1776	-0.00062745	1.6259	0.00086631	532.8133412064126	90.11	0.64309	90.11	89.933	90.577	0					28	15	3	0	0	0	0.028476	1	9714	9714		54.776	10.66	1	437800			26590	3471	21763	21790	29774	29774					0.08456540462793782
KTRPALPQ	8	Unmodified	_KTRPALPQ_					0	0	0		EPB42|p.M334K|1|0.39|ENSG00000166947|chr15:43208304-43208304|A/T|missense_variant	EPB42|p.M334K|1|0.39|ENSG00000166947|chr15:43208304-43208304|A/T|missense_variant	EPB42|p.M334K|1|0.39|ENSG00000166947|chr15:43208304-43208304|A/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.72589111328125	2	455.777077	909.5396	-0.3493	-0.0001592	0.31952	0.00014563	-0.029776	-1.3571E-05	455.7771590250626	49.278	0.64818	49.278	49.075	49.723	0					21	14	2	0	0	0	0.028476	1	3713	3713		26.693	8.3685	1	590480			26591	14312	21764	21791	29775	29775					0.08121197371269773
KTRQKSAR	8	Unmodified	_KTRQKSAR_					0	0	0			REV__ENST00000485400.1_1_10:99219355-99219481:-|nuORF	REV__ENST00000485400.1_1_10:99219355-99219481:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.26092529296875	2	487.796332	973.578111	0.70321	0.00034302	2.6574	0.0012963	3.3606	0.0016393	487.79739555309	67.047	0.31635	67.047	66.939	67.255	0					13	7	2	0	0	0	0.028476	1	6253	6253		21.96	5.4867	1	536630	+		26592	26564	21765	21792	29776	29776					0.09026503005793529
KTRQKSAR	8	Unmodified	_KTRQKSAR_					0	0	0			REV__ENST00000485400.1_1_10:99219355-99219481:-|nuORF	REV__ENST00000485400.1_1_10:99219355-99219481:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	487.796332	973.578111	-0.62362	-0.0003042	2.1878	0.0010672	1.5641	0.00076299	487.7972031217254	70.308	0.58795	66.827	66.639	67.227	-3.4812	-0.10997	-0.00024072	NaN	15.642	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51646	+		26593	26564	21765	21792							0.09026503005793529
KTRSIHSLA	9	Unmodified	_KTRSIHSLA_					0	0	0			REV__nc|ENSG00000120498|Q8IYF3-2|TEX11	REV__nc|ENSG00000120498|Q8IYF3-2|TEX11	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.845703125	2	506.79854	1011.58253	-1.2702	-0.00064372	1.783	0.00090361	0.51282	0.00025989	507.2981923173608	76.631	0.62967	74.26	73.928	74.558	-2.3715					28	11	3	0	0	0	0.027462	1	3951	3951		17.365	0	1	37200	+		26594	18501	21766	21793	29777	29777					0.07719967428704422
KTRSPSAPI	9	Unmodified	_KTRSPSAPI_					0	0	0			REV__ENSG00000075218|ENST00000454366|GTSE1	REV__ENSG00000075218|ENST00000454366|GTSE1	MULTI-MSMS	OvCa9_classI_Rep2	2	478.77783203125	2	478.779816	955.545079	-0.62041	-0.00029704	-0.49203	-0.00023558	-1.1124	-0.00053261	478.77933923625665	74.056	2.9189	72.085	71.378	74.297	-1.9711					156	55	6	0	0	0	0.27001	1	6001	6001		66.429	2.222	1	2474400	+		26595	16963	21767	21794	29778	29778					0.0655287616308442
KTRYKLKV	8	Unmodified	_KTRYKLKV_					0	0	0		nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC	nc|ENSG00000041982|P24821-6|TNC	nc|ENSG00000041982|P24821-6|TNC	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.2958374023438	2	518.337301	1034.66005	-0.89179	-0.00046225	0.63572	0.00032952	-0.25607	-0.00013273	518.3361295997248	93.34	0.34792	91.379	91.079	91.427	-1.9617					9	6	2	0	0	0	0.028476	1	5968	5968		19.36	6.4008	1	13434			26596	1119	21768	21795	29779	29779					0.14410605364878393
KTSAGKEVIN	10	Unmodified	_KTSAGKEVIN_					0	0	0		ENSG00000171865|ENST00000315212|RNASEH1	ENSG00000171865|ENST00000315212|RNASEH1	ENSG00000171865|ENST00000315212|RNASEH1	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.7946166992188	2	523.795663	1045.57677	-0.90941	-0.00047634	0.39018	0.00020437	-0.51923	-0.00027197	523.795823719714	39.941	1.4356	36.987	36.665	38.101	-2.9541					63	27	4	0	0	0	0.34811	1	1676	1676		75.043	1.0686	1	430070			26597	7244	21769	21796	29780	29780					0.055808241263775926
KTSDFLKVL	9	Unmodified	_KTSDFLKVL_					0	0	0		ENSG00000163466|ENST00000315717|ARPC2;ENST00000487321.1_1_2:219114510-219118635:+|nuORF	ENSG00000163466|ENST00000315717|ARPC2	ENSG00000163466|ENST00000315717|ARPC2	MULTI-MSMS	OvCa9_classI_Rep2	2	525.8117065429688	2	525.813325	1049.6121	-0.54659	-0.0002874	-0.30508	-0.00016042	-0.85167	-0.00044782	525.8130999174671	94.535	1.6279	93.435	93.114	94.742	-1.0995					76	32	5	0	0	0	0.07097	2	8478	8478;8485		106.68	21.522	1	526540			26598	6310	21770	21797	29781;29782	29781					0.08927486654192762
KTSDFLKVL	9	Unmodified	_KTSDFLKVL_					0	0	0		ENSG00000163466|ENST00000315717|ARPC2;ENST00000487321.1_1_2:219114510-219118635:+|nuORF	ENSG00000163466|ENST00000315717|ARPC2	ENSG00000163466|ENST00000315717|ARPC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.8147583007812	2	525.813325	1049.6121	-0.67463	-0.00035473	-0.095271	-5.0095E-05	-0.7699	-0.00040482	525.8132293569852	96.163	1.5089	93.738	93.457	94.966	-2.4256					60	29	5	0	0	0	0.1149	3	8487	8478;8487;8502		93.143	17.361	1	568510			26599	6310	21770	21797	29783;29784;29785	29784					0.08927486654192762
KTSDFLKVL	9	Unmodified	_KTSDFLKVL_					0	0	0		ENSG00000163466|ENST00000315717|ARPC2;ENST00000487321.1_1_2:219114510-219118635:+|nuORF	ENSG00000163466|ENST00000315717|ARPC2	ENSG00000163466|ENST00000315717|ARPC2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	525.813325	1049.6121	-1.2323	-0.00064794	0.44003	0.00023137	-0.79224	-0.00041657	525.8135154611688	95.587	1.7099	93.758	93.378	95.088	-1.8286	0.11456	0.00057812	NaN	106.68	60	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	609990			26600	6310	21770	21797							0.08927486654192762
KTSDKYNSI	9	Unmodified	_KTSDKYNSI_					0	0	0			REV__tr|A0A7D6VR54|A0A7D6VR54_9CLOTalpha,alpha-phosphotrehalaseOS=ClostridiumintestinaleOX=36845GN=treCPE=4SV=1	REV__tr|A0A7D6VR54|A0A7D6VR54_9CLOTalpha,alpha-phosphotrehalaseOS=ClostridiumintestinaleOX=36845GN=treCPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3279418945312	2	528.272021	1054.52949	1.9186	0.0010135	1.9191	0.0010138	3.8377	0.0020273	528.2731753348122	92.947	0.20786	92.947	92.803	93.011	0					8	4	2	0	0	0	0.027462	1	10063	10063		23.523	0	1	256020	+		26601	31387	21771	21798	29786	29786					0.004405448553598035
KTSFHHIV	8	Unmodified	_KTSFHHIV_					0	0	0			REV__ENST00000529978.1_1_8:12870155-12879550:+|nuORF	REV__ENST00000529978.1_1_8:12870155-12879550:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	484.7675476074219	2	484.769252	967.52395	-0.66432	-0.00032204	-3.857	-0.0018697	-4.5213	-0.0021918	484.7672527547426	52.105	0.60974	52.105	51.912	52.522	0					29	13	3	0	0	0	0.60331	1	4055	4055		63.306	5.495	1	2597100	+		26602	23493	21772	21799	29787	29787					0.038889108542207396
KTSFLTELID	10	Unmodified	_KTSFLTELID_					0	0	0		ENST00000478403.5_1_2:242436769-242438604:-|nuORF;ENST00000487962.5_1_2:242435079-242438851:-|nuORF;nc|ENSG00000115694|O00506-3|STK25;nc|ENSG00000115694|O00506-2|STK25;ENSG00000115694|ENST00000316586|STK25;ENST00000495143.5_1_2:242438052-242438731:-|nuORF	ENST00000478403.5_1_2:242436769-242438604:-|nuORF	ENST00000478403.5_1_2:242436769-242438604:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	584.3084716796875	2	583.818804	1165.62306	-1.9436	-0.0011347	0.29584	0.00017272	-1.6478	-0.00096201	583.8189927015379	100.39	0.87691	98.789	98.518	99.395	-1.6053					30	17	3	0	0	0	0.027028	1	6878	6878		31.53	3.6476	1	83028			26603	3121	21773	21800	29788	29788					0.046868442377899555
KTSGPEKKP	9	Unmodified	_KTSGPEKKP_					0	0	0		nc|ENSG00000163629|Q12923-2|PTPN13;nc|ENSG00000163629|Q12923-3|PTPN13;ENSG00000163629|ENST00000411767|PTPN13;nc|ENSG00000163629|Q12923-4|PTPN13;PTPN13|p.R2338Qfs*21|1|0.05|ENSG00000163629|chr4:86807826-86807827|-/A|frameshift_variant	nc|ENSG00000163629|Q12923-2|PTPN13	nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.2926940917969	2	486.279649	970.544745	0.029404	1.4299E-05	0.036169	1.7588E-05	0.065573	3.1887E-05	486.27938233845856	83.483	1.3106	80.82	80.193	81.504	-2.6629					42	26	2	0	0	0	0.027461	1	6880	6880		32.812	7.2384	1	56163			26604	6337	21774	21801	29789	29789					0.05829456443234449
KTSGPRAAPE	10	Unmodified	_KTSGPRAAPE_					0	0	0		ENST00000521393.1_1_14:106188133-106188816:-|nuORF;nc|ENSG00000211891|P01854-1|IGHE;nc|ENSG00000211891|P01854-3|IGHE;nc|ENSG00000211891|P01854|IGHE	ENST00000521393.1_1_14:106188133-106188816:-|nuORF	ENST00000521393.1_1_14:106188133-106188816:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.79644775390625	2	507.272355	1012.53016	1.5403	0.00078136	-2.5012	-0.0012688	-0.96089	-0.00048743	507.2710671578159	138.31	1.1568	138.31	137.87	139.03	0					39	24	2	0	0	0	0.026618	1	16186	16186		28.577	0	1	57550			26605	13122	21775	21802	29790	29790					0.02439384295075797
KTSHLKGHQRI	11	Unmodified	_KTSHLKGHQRI_					0	0	0		nc|ENSG00000274349|Q5TYW1-2|ZNF658;nc|ENSG00000198416|Q4V348|ZNF658B;ENST00000602828.1_9:39444499-39446956:-|nuORF;ENSG00000274349|ENST00000621410|ZNF658;ENST00000377618.4_9:39444499-39464431:-|nuORF	nc|ENSG00000274349|Q5TYW1-2|ZNF658	nc|ENSG00000274349|Q5TYW1-2|ZNF658	MULTI-SECPEP	OvCa9_classI_Rep3	3	436.2613220214844	3	435.58971	1303.7473	1.7242	0.00075104	-0.67964	-0.00029604	1.0446	0.000455	435.9234640415155	64.527	0.25206	61.534	61.344	61.596	-2.9933					7	4	2	0	0	0	0.025818	1	2507	2507		41.109	18.547	1	5328.7			26606	9563	21776	21803	29791	29791					0.1075777956850743
KTSIPVRGIV	10	Unmodified	_KTSIPVRGIV_					0	0	0			REV__tr|A0A553SFC6|A0A553SFC6_NIACIMalonate-semialdehydedehydrogenaseOS=NialliacirculansOX=1397GN=iolAPE=3SV=1	REV__tr|A0A553SFC6|A0A553SFC6_NIACIMalonate-semialdehydedehydrogenaseOS=NialliacirculansOX=1397GN=iolAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	535.3392333984375	2	535.340041	1068.66553	-1.5363	-0.00082246	1.039	0.00055624	-0.49729	-0.00026622	535.3405413095446	47.805	1.5411	45.095	44.588	46.129	-2.7097					85	30	4	0	0	0	0.67931	1	2970	2970		32.812	3.6629	1	476770	+		26607	29563	21777	21804	29792	29792					0.13394284156697722
KTSLTDVVKP	10	Unmodified	_KTSLTDVVKP_					0	0	0		chr14:103584996-103587274|232|16.82|0.0|20.68|+|2|TE_info:AluSg,AluSg_dup27341,Alu,SINE,donor,+,103584858,103584996|None,COA8|2	chr14:103584996-103587274|232|16.82|0.0|20.68|+|2|TE_info:AluSg,AluSg_dup27341,Alu,SINE,donor,+,103584858,103584996|None,COA8|2	chr14:103584996-103587274|232|16.82|0.0|20.68|+|2|TE_info:AluSg,AluSg_dup27341,Alu,SINE,donor,+,103584858,103584996|None,COA8|2	MULTI-SECPEP	OvCa9_classI_Rep2	2	543.337646484375	2	544.321514	1086.62847	-2.1939	-0.0011942	2.915	0.0015867	0.7211	0.00039251	544.3229284735202	62.67	1.0951	59.925	59.695	60.79	-2.7444					27	20	2	0	0	0	0.026494	1	4728	4728		49.536	3.5638	1	37058			26608	342	21778	21805	29793	29793					0.08862567820256118
KTSPKALVI	9	Unmodified	_KTSPKALVI_					0	0	0		CDYL|p.S377Pfs*29|1|0.79|ENSG00000153046|chr6:4937582-4937603|GAGTGCTCTGAGCACGGCCGCT/-|frameshift_variant;ENSG00000153046|ENST00000397588|CDYL;nc|ENSG00000153046|Q9Y232|CDYL	CDYL|p.S377Pfs*29|1|0.79|ENSG00000153046|chr6:4937582-4937603|GAGTGCTCTGAGCACGGCCGCT/-|frameshift_variant	CDYL|p.S377Pfs*29|1|0.79|ENSG00000153046|chr6:4937582-4937603|GAGTGCTCTGAGCACGGCCGCT/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	478.8104553222656	2	478.810585	955.606617	-0.54522	-0.00026105	0.41903	0.00020064	-0.12618	-6.0418E-05	478.81062665352715	59.19	1.7052	56.41	55.838	57.544	-2.7801					91	32	4	0	0	0	0.055627	1	4291	4291		115.49	13.893	1	541770			26609	216	21779	21806	29794	29794					0.12703807862362737
KTSPSRSI	8	Unmodified	_KTSPSRSI_					0	0	0			REV__NT5C1B|p.L549Sfs*12|1|0.06|ENSG00000185013|chr2:18563985-18563986|-/CTCCACCCATTGCAGGTTCTCCAGACAAGGAA|frameshift_variant	REV__NT5C1B|p.L549Sfs*12|1|0.06|ENSG00000185013|chr2:18563985-18563986|-/CTCCACCCATTGCAGGTTCTCCAGACAAGGAA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	438.2506408691406	2	438.250892	874.48723	0.8337	0.00036537	-0.71804	-0.00031468	0.11567	5.069E-05	438.2504606921411	40.369	1.2824	37.66	37.402	38.684	-2.7097					65	25	5	0	0	0	0.68704	1	2047	2047		45.972	0.020292	1	308830	+		26610	22470	21780	21807	29795	29795					0.04496614237655194
KTSVTSSLKW	10	Unmodified	_KTSVTSSLKW_					0	0	0		DGKG|p.F695Sfs*16|1|0.12|ENSG00000058866|chr3:186188213-186188213|A/-|frameshift_variant	DGKG|p.F695Sfs*16|1|0.12|ENSG00000058866|chr3:186188213-186188213|A/-|frameshift_variant	DGKG|p.F695Sfs*16|1|0.12|ENSG00000058866|chr3:186188213-186188213|A/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.8082885742188	2	568.819138	1135.62372	-0.52852	-0.00030063	-1.8888	-0.0010744	-2.4173	-0.001375	568.8178724481593	28.962	0.59853	28.962	28.739	29.337	0					19	11	4	0	0	0	0.026782	1	1002	1002		30.318	0	1	335660			26611	732	21781	21808	29796	29796					0.06133683677535373
KTTAVRLI	8	Unmodified	_KTTAVRLI_					0	0	0		tr|A0A7D6ZVR6|A0A7D6ZVR6_9CLOTUPF0210proteinHZF06_05225OS=ClostridiumintestinaleOX=36845GN=HZF06_05225PE=3SV=1	tr|A0A7D6ZVR6|A0A7D6ZVR6_9CLOTUPF0210proteinHZF06_05225OS=ClostridiumintestinaleOX=36845GN=HZF06_05225PE=3SV=1	tr|A0A7D6ZVR6|A0A7D6ZVR6_9CLOTUPF0210proteinHZF06_05225OS=ClostridiumintestinaleOX=36845GN=HZF06_05225PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.7684020996094	2	451.295102	900.575651	0.37162	0.00016771	-0.27385	-0.00012359	0.097775	4.4126E-05	451.29508441458813	65.108	0.35464	65.108	64.916	65.271	0					12	8	2	0	0	0	0.028476	1	5969	5969		47.657	7.0847	1	64125			26612	35812	21782	21809	29797	29797					0.12138654548141403
KTTELDTII	9	Unmodified	_KTTELDTII_					0	0	0			REV__tr|A0A7D7AFV2|A0A7D7AFV2_9CLOTDaunorubicinresistanceproteinDrrAfamilyABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07120PE=4SV=1	REV__tr|A0A7D7AFV2|A0A7D7AFV2_9CLOTDaunorubicinresistanceproteinDrrAfamilyABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07120PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	517.2923583984375	2	517.292422	1032.57029	-0.99481	-0.00051461	1.7512	0.0009059	0.75642	0.00039129	517.2930565214009	52.492	2.0297	49.679	49.146	51.176	-2.8129					90	40	5	0	0	0	0.40667	1	3509	3509		51.335	6.8044	1	322850	+		26613	32719	21783	21810	29798	29798					0.05530886175006344
KTTGKLVE	8	Unmodified	_KTTGKLVE_					0	0	0			REV__ENST00000546999.5_1_12:96374470-96386548:-|nuORF	REV__ENST00000546999.5_1_12:96374470-96386548:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	438.9144592285156	2	438.263468	874.512382	0.58378	0.00025585	1.2976	0.00056868	1.8814	0.00082453	438.26409890438964	55.902	0.45306	55.902	55.641	56.094	0					16	10	2	0	0	0	0.028476	1	4602	4602		26.693	5.746	1	104110	+		26614	17120	21784	21811	29799	29799					0.07010669040232642
KTTKIVWVD	9	Unmodified	_KTTKIVWVD_					0	0	0			REV__tr|A0A553SP52|A0A553SP52_NIACIRibosomematurationfactorRimMOS=NialliacirculansOX=1397GN=rimMPE=3SV=1	REV__tr|A0A553SP52|A0A553SP52_NIACIRibosomematurationfactorRimMOS=NialliacirculansOX=1397GN=rimMPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3162841796875	2	545.318774	1088.623	-2.8527	-0.0015556	-0.96726	-0.00052747	-3.8199	-0.0020831	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.66262	1	11964	11964		24.519	4.5224	1	337600	+		26615	30493	21785	21812	29800	29800					0.08222889028479585
KTTKNLTSH	9	Unmodified	_KTTKNLTSH_					0	0	0			REV__tr|A0A7D7A1M8|A0A7D7A1M8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16110PE=4SV=1	REV__tr|A0A7D7A1M8|A0A7D7A1M8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16110PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2744750976562	2	515.288005	1028.56146	1.4913	0.00076845	-3.1034	-0.0015992	-1.6121	-0.00083071	515.286347268745	80.806	0.46577	80.806	80.571	81.037	0					25	10	3	0	0	0	0.027462	1	8329	8329		31.53	5.9558	1	982380	+		26616	32500	21786	21813	29801	29801					0.04831957329179204
KTTKRRNL	8	Unmodified	_KTTKRRNL_					0	0	0		ENST00000333896.5_1_2:54839436-54843425:+|nuORF	ENST00000333896.5_1_2:54839436-54843425:+|nuORF	ENST00000333896.5_1_2:54839436-54843425:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7861022949219	2	508.819807	1015.62506	-0.49019	-0.00024942	3.412	0.0017361	2.9218	0.0014867	508.82157897998246	68.343	0.37193	68.343	68.192	68.564	0					14	8	2	0	0	0	0.028476	1	6434	6434		37.812	1.3648	1	536620			26617	10471	21787	21814	29802	29802					0.11787362556935932
KTTKRRNL	8	Unmodified	_KTTKRRNL_					0	0	0		ENST00000333896.5_1_2:54839436-54843425:+|nuORF	ENST00000333896.5_1_2:54839436-54843425:+|nuORF	ENST00000333896.5_1_2:54839436-54843425:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.77471923828125	2	508.819807	1015.62506	-0.4373	-0.00022251	2.5265	0.0012855	2.0892	0.001063	508.82097181110237	55.179	0.24998	55.179	55.023	55.273	0					10	5	2	0	0	0	0.028476	1	4499	4499		45.972	14.017	1	229860			26618	10471	21787	21814	29803	29803					0.11787362556935932
KTTLRAGLI	9	Unmodified	_KTTLRAGLI_					0	0	0		ENSG00000086200|ENST00000325324|IPO11;nc|ENSG00000086200|Q9UI26-2|IPO11	ENSG00000086200|ENST00000325324|IPO11	ENSG00000086200|ENST00000325324|IPO11	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.2812194824219	2	486.813659	971.612765	0.28799	0.0001402	3.7057	0.001804	3.9937	0.0019442	486.8154026791851	82.937	1.0571	81.338	81.063	82.12	-1.5988					30	21	2	0	0	0	0.027462	1	7068	7068		36.447	14.487	1	39407			26619	1749	21788	21815	29804	29804					0.12582326093888696
KTTPGLRML	9	Unmodified	_KTTPGLRML_					0	0	0		tr|A0A553SN70|A0A553SN70_NIACInicotinate-nucleotidediphosphorylase(carboxylating)OS=NialliacirculansOX=1397GN=nadCPE=3SV=1	tr|A0A553SN70|A0A553SN70_NIACInicotinate-nucleotidediphosphorylase(carboxylating)OS=NialliacirculansOX=1397GN=nadCPE=3SV=1	tr|A0A553SN70|A0A553SN70_NIACInicotinate-nucleotidediphosphorylase(carboxylating)OS=NialliacirculansOX=1397GN=nadCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	508.79766845703125	2	508.799694	1015.58484	-0.073799	-3.7549E-05	-3.3685	-0.0017139	-3.4423	-0.0017514	508.79781426148145	110.04	1.2366	109.86	109.56	110.8	-0.17236					63	24	4	0	0	0	0.46356	1	10356	10356		45.972	5.3996	1	341650			26620	33906	21789	21816	29805	29805					0.07766679842154645
KTTSRPFL	8	Unmodified	_KTTSRPFL_					0	0	0		ENST00000261880.9_1_15:67494793-67494964:-|nuORF	ENST00000261880.9_1_15:67494793-67494964:-|nuORF	ENST00000261880.9_1_15:67494793-67494964:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	474.7475280761719	2	475.276909	948.539266	-1.1058	-0.00052557	0.25847	0.00012285	-0.84734	-0.00040272	475.2768217010906	68.608	1.1893	65.987	65.376	66.565	-2.6203					28	23	2	0	0	0	0.028476	1	5350	5350		20.947	0	1	38096			26621	9876	21790	21817	29806	29806					0.06293777651421806
KTTTIAVEV	9	Unmodified	_KTTTIAVEV_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OvCa9_classI_Rep2	2	481.28240966796875	2	481.281857	960.549162	-0.78203	-0.00037638	0.71594	0.00034457	-0.066098	-3.1812E-05	481.2820178551359	74.89	2.1831	72.918	72.376	74.559	-1.9711					93	41	3	0	0	0	0.17606	1	6145	6145		80.455	5.4113	1	492480			26622	3119	21791	21818	29807	29807					0.06730920866141332
KTTTTILV	8	Unmodified	_KTTTTILV_					0	0	0			REV__tr|A0A7D7AEE0|A0A7D7AEE0_9CLOTPutativeselenium-dependenthydroxylaseaccessoryproteinYqeCOS=ClostridiumintestinaleOX=36845GN=yqeCPE=4SV=1	REV__tr|A0A7D7AEE0|A0A7D7AEE0_9CLOTPutativeselenium-dependenthydroxylaseaccessoryproteinYqeCOS=ClostridiumintestinaleOX=36845GN=yqeCPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	438.7295227050781	2	438.773668	875.532783	0.97738	0.00042885	0.43343	0.00019018	1.4108	0.00061903	438.77351020288137	70.634	0.39561	70.634	70.286	70.681	0					13	9	2	0	0	0	0.028476	1	6780	6780		8.2313	0	1	235260	+		26623	32704	21792	21819	29808	29808					0.0900383970005123
KTTVSGSK	8	Unmodified	_KTTVSGSK_					0	0	0			REV__CRB1|p.L523Sfs*28|1|0.04|ENSG00000134376|chr1:197421393-197421394|-/G|frameshift_variant	REV__CRB1|p.L523Sfs*28|1|0.04|ENSG00000134376|chr1:197421393-197421394|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	404.2325439453125	2	404.232168	806.449782	1.3505	0.00054594	0.46264	0.00018701	1.8132	0.00073295	404.23224424215823	134.98	1.1763	134.75	134.34	135.52	-0.22696					59	23	3	0	0	0	0.7549	1	13343	13343		24.203	3.2558	1	117390	+		26624	16239	21793	21820	29809	29809					0.03881522972062612
KTTVVANIT	9	Unmodified	_KTTVVANIT_					0	0	0			REV__tr|A0A553SNA8|A0A553SNA8_NIACIMannosylglyceratehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_24105PE=3SV=1	REV__tr|A0A553SNA8|A0A553SNA8_NIACIMannosylglyceratehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_24105PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	474.7475280761719	2	473.782025	945.549496	-1.2966	-0.00061431	-0.64112	-0.00030375	-1.9377	-0.00091806	473.7813852285128	67.906	0.8865	65.245	65.041	65.927	-2.661					19	17	2	0	0	0	0.027441	1	5350	5350		13.454	0	1	10381	+		26625	30402	21794	21821	29810	29810					0.07454340585979935
KTTVVANIT	9	Unmodified	_KTTVVANIT_					0	0	0			REV__tr|A0A553SNA8|A0A553SNA8_NIACIMannosylglyceratehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_24105PE=3SV=1	REV__tr|A0A553SNA8|A0A553SNA8_NIACIMannosylglyceratehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_24105PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	473.782025	945.549496	0.80111	0.00037955	-2.8428	-0.0013469	-2.0417	-0.00096733	473.78020491252687	68.621	0.88683	65.131	64.965	65.852	-3.4902	-0.056929	-0.00086865	NaN	19.104	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44754	+		26626	30402	21794	21821							0.07454340585979935
KTTYGQVSE	9	Unmodified	_KTTYGQVSE_					0	0	0			REV__ENSG00000103194|ENST00000219473|USP10	REV__ENSG00000103194|ENST00000219473|USP10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.33831787109375	2	506.750921	1011.48729	3.0866	0.0015641	-3.6235	-0.0018362	-0.53693	-0.00027209	506.7489241426548	131.03	0.75177	129.56	129.35	130.1	-1.4779					20	15	2	0	0	0	0.027462	1	12630	12630		28.081	0	1	16384	+		26627	17601	21795	21822	29811	29811					-0.017994305529896337
KTVDRIEK	8	Unmodified	_KTVDRIEK_					0	0	0		tr|A0A7D6VP67|A0A7D6VP67_9CLOTDNA-directedRNApolymerasesubunitbeta'OS=ClostridiumintestinaleOX=36845GN=rpoCPE=3SV=1	tr|A0A7D6VP67|A0A7D6VP67_9CLOTDNA-directedRNApolymerasesubunitbeta'OS=ClostridiumintestinaleOX=36845GN=rpoCPE=3SV=1	tr|A0A7D6VP67|A0A7D6VP67_9CLOTDNA-directedRNApolymerasesubunitbeta'OS=ClostridiumintestinaleOX=36845GN=rpoCPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	494.7667236328125	2	494.792924	987.571294	0.56713	0.00028061	2.9093	0.0014395	3.4765	0.0017201	494.7942199973234	70.621	1.0293	68.051	67.765	68.794	-2.5707					45	19	3	0	0	0	0.028476	1	5653	5653		23.523	0	1	96233			26628	34753	21796	21823	29812	29812					0.07701145334567627
KTVEKFGR	8	Unmodified	_KTVEKFGR_					0	0	0		tr|A0A553STN2|A0A553STN2_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05470PE=3SV=1	tr|A0A553STN2|A0A553STN2_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05470PE=3SV=1	tr|A0A553STN2|A0A553STN2_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05470PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.762451171875	2	482.782359	963.550165	2.6231	0.0012664	-3.4947	-0.0016872	-0.87162	-0.0004208	482.78045222466125	75.4	0.39525	75.4	75.128	75.523	0					14	9	2	0	0	0	0.028476	1	7508	7508		9.7057	0	1	314390			26629	34509	21797	21824	29813	29813					0.06693180025706624
KTVEPLTVK	9	Unmodified	_KTVEPLTVK_					0	0	0		nc|ENSG00000165626|Q8N7W2-2|BEND7;ENSG00000165626|ENST00000466271|BEND7;nc|ENSG00000165626|Q8N7W2-3|BEND7	nc|ENSG00000165626|Q8N7W2-2|BEND7	nc|ENSG00000165626|Q8N7W2-2|BEND7	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.8249206542969	2	507.813325	1013.6121	-0.26177	-0.00013293	-0.4565	-0.00023181	-0.71827	-0.00036475	507.8131519628418	29.859	0.29988	29.859	29.686	29.986	0					6	5	2	0	0	0	0.027462	1	1106	1106		53.089	10.225	1	32155			26630	6580	21798	21825	29814	29814					0.10583486654184071
KTVEVFVE	8	Unmodified	_KTVEVFVE_					0	0	0		tr|A0A7D7A0Q6|A0A7D7A0Q6_9CLOTtRNA-2-methylthio-N(6)-dimethylallyladenosinesynthaseOS=ClostridiumintestinaleOX=36845GN=miaBPE=3SV=1	tr|A0A7D7A0Q6|A0A7D7A0Q6_9CLOTtRNA-2-methylthio-N(6)-dimethylallyladenosinesynthaseOS=ClostridiumintestinaleOX=36845GN=miaBPE=3SV=1	tr|A0A7D7A0Q6|A0A7D7A0Q6_9CLOTtRNA-2-methylthio-N(6)-dimethylallyladenosinesynthaseOS=ClostridiumintestinaleOX=36845GN=miaBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	474.79241943359375	2	475.7633	949.512048	0.13265	6.3111E-05	0.64996	0.00030923	0.78261	0.00037234	475.76313373874507	105.91	0.71101	103.9	103.6	104.31	-2.0161					23	13	2	0	0	0	0.028476	1	9652	9652		18.324	3.4595	1	48124			26631	36004	21799	21826	29815	29815					0.03527249320381998
KTVFCLVLV	9	Unmodified	_KTVFCLVLV_					0	0	0		nc|ENSG00000136160|P24530-2|EDNRB;ENSG00000136160|ENST00000646607|EDNRB;nc|ENSG00000136160|P24530-3|EDNRB	nc|ENSG00000136160|P24530-2|EDNRB	nc|ENSG00000136160|P24530-2|EDNRB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.2468872070312	2	511.309364	1020.60417	-0.86377	-0.00044165	-1.0957	-0.00056022	-1.9594	-0.0010019	511.31053458974924	80.524	0.87974	77.813	77.123	78.003	-2.7106					23	17	3	0	0	0	0.027462	1	6533	6533		35.618	0	1	49718			26632	4467	21800	21827	29816	29816					0.09469636133042059
KTVFCLVLV	9	Unmodified	_KTVFCLVLV_					0	0	0		nc|ENSG00000136160|P24530-2|EDNRB;ENSG00000136160|ENST00000646607|EDNRB;nc|ENSG00000136160|P24530-3|EDNRB	nc|ENSG00000136160|P24530-2|EDNRB	nc|ENSG00000136160|P24530-2|EDNRB	MULTI-MATCH	OvCa9_classI_Rep2	2		2	511.309364	1020.60417	0.25944	0.00013266	2.425	0.0012399	2.6844	0.0013726	511.3101085156292	79.546	0.62198	77.851	77.452	78.074	-1.6951	-0.1046	0.00039121	NaN	35.618	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31427			26633	4467	21800	21827							0.09469636133042059
KTVFCLVLV	9	Unmodified	_KTVFCLVLV_					0	0	0		nc|ENSG00000136160|P24530-2|EDNRB;ENSG00000136160|ENST00000646607|EDNRB;nc|ENSG00000136160|P24530-3|EDNRB	nc|ENSG00000136160|P24530-2|EDNRB	nc|ENSG00000136160|P24530-2|EDNRB	MULTI-MATCH	OvCa9_classI_Rep3	3		2	511.309364	1020.60417	-0.058439	-2.988E-05	2.3027	0.0011774	2.2443	0.0011475	511.3103514505611	80.525	1.2791	78.203	77.678	78.957	-2.3226	0.24695	0.00026618	NaN	35.618	52	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165160			26634	4467	21800	21827							0.09469636133042059
KTVGHHQGALL	11	Unmodified	_KTVGHHQGALL_					0	0	0			REV__ENSG00000006210|ENST00000006053|CX3CL1	REV__ENSG00000006210|ENST00000006053|CX3CL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.3035888671875	2	580.830372	1159.64619	-1.0915	-0.00063397	3.5384	0.0020552	2.4469	0.0014212	580.83218664866	44.418	0.3127	44.418	44.26	44.573	0					11	6	2	0	0	0	0.025344	1	2992	2992		49.536	0.094497	1	176990	+		26635	16413	21801	21828	29817	29817					0.07275327865818326
KTVGRVINDA	10	Unmodified	_KTVGRVINDA_					0	0	0			REV__tr|A0A553SHR7|A0A553SHR7_NIACIPspA/IM30familyproteinOS=NialliacirculansOX=1397GN=CEQ21_13510PE=3SV=1	REV__tr|A0A553SHR7|A0A553SHR7_NIACIPspA/IM30familyproteinOS=NialliacirculansOX=1397GN=CEQ21_13510PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.2940673828125	2	536.809105	1071.60366	1.8864	0.0010126	-2.0511	-0.001101	-0.1647	-8.8413E-05	536.8090451488916	82.946	0.25381	82.946	82.781	83.035	0					8	5	2	0	0	0	0.027117	1	8603	8603		21.686	0	1	215520	+		26636	29829	21802	21829	29818	29818					0.0707193273754001
KTVGYTSR	8	Unmodified	_KTVGYTSR_					0	0	0			REV__ENSG00000214753|ENST00000301785|HNRNPUL2	REV__ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.2702941894531	2	456.250892	910.48723	-0.39905	-0.00018206	1.078	0.00049183	0.67894	0.00030977	456.2513034322902	46.345	1.6072	43.272	42.613	44.221	-3.0724					51	30	2	0	0	0	0.028476	1	2399	2399		23.042	10.836	1	44083	+		26637	23296	21803	21830	29819	29819					0.02840614237675254
KTVHVKRVT	9	Unmodified	_KTVHVKRVT_					0	0	0			REV__ENST00000528224.1_1_11:66616372-66617354:-|nuORF	REV__ENST00000528224.1_1_11:66616372-66617354:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.7998657226562	2	534.337833	1066.66111	3.3963	0.0018147	2.3244	0.001242	5.7206	0.0030567	534.3390766941039	88.089	0.4606	88.089	87.881	88.342	0					13	10	2	0	0	0	0.027462	1	9356	9356		23.523	4.4192	1	114260	+		26638	21789	21804	21831	29820	29820					0.1304481973379552
KTVKIQAF	8	Unmodified	_KTVKIQAF_					0	0	0			REV__nc|ENSG00000111880|O60942-2|RNGTT	REV__nc|ENSG00000111880|O60942-2|RNGTT	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.7942810058594	2	467.789653	933.564752	0.52666	0.00024637	-0.33614	-0.00015724	0.19052	8.9125E-05	467.78967985024445	115.4	0.49467	114.01	113.82	114.32	-1.3977					14	9	2	0	0	0	0.028476	1	10733	10733		28.254	9.9299	1	33119	+		26639	18068	21805	21832	29821	29821					0.09531252173849225
KTVKIQAF	8	Unmodified	_KTVKIQAF_					0	0	0			REV__nc|ENSG00000111880|O60942-2|RNGTT	REV__nc|ENSG00000111880|O60942-2|RNGTT	MULTI-MATCH	OvCa9_classI_Rep2	2		2	467.789653	933.564752	-0.027894	-1.3049E-05	-0.068571	-3.2077E-05	-0.096466	-4.5126E-05	467.78965294953144	114.32	0.44384	114.21	114.01	114.45	-0.11777	0.10014	1.6736E-05	NaN	28.254	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16332	+		26640	18068	21805	21832							0.09531252173849225
KTVKRKTHR	9	Unmodified	_KTVKRKTHR_					0	0	0		ENST00000475185.5_1_18:20877812-20889646:-|nuORF	ENST00000475185.5_1_18:20877812-20889646:-|nuORF	ENST00000475185.5_1_18:20877812-20889646:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	577.3668212890625	2	577.367456	1152.72036	-5.5665	-0.0032139	4.4712	0.0025815	-1.0953	-0.0006324	577.369928690125	160.74	1.397	160.51	160.13	161.53	-0.22696					95	27	5	0	0	0	0.59259	1	16364	16364		32.812	0.85756	1	1195800			26641	12443	21806	21833	29822	29822					0.15010715747962422
KTVLFTKKN	9	Unmodified	_KTVLFTKKN_					0	0	0		ENST00000253233.5_1_12:123741426-123741600:+|nuORF	ENST00000253233.5_1_12:123741426-123741600:+|nuORF	ENST00000253233.5_1_12:123741426-123741600:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	539.8363037109375	2	539.834591	1077.65463	-0.99253	-0.0005358	-1.2166	-0.00065678	-2.2092	-0.0011926	539.8339858096044	27.666	1.4976	27.666	27.291	28.789	0					65	29	5	0	0	0	0.3076	1	809	809		62.107	12.666	1	2677600			26642	9804	21807	21834	29823	29823					0.11890881782437646
KTVMSFLLL	9	Unmodified	_KTVMSFLLL_					0	0	0			REV__STRIP2|p.N588Tfs*21|1|0.05|ENSG00000128578|chr7:129464723-129464723|C/-|frameshift_variant	REV__STRIP2|p.N588Tfs*21|1|0.05|ENSG00000128578|chr7:129464723-129464723|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.7825317382812	2	526.314646	1050.61474	-0.34461	-0.00018138	1.7739	0.00093361	1.4292	0.00075223	526.3156476171355	62.092	0.25564	62.092	61.953	62.209	0					8	5	2	0	0	0	0.027447	1	5513	5513		56.721	3.3696	1	146840	+		26643	18859	21808	21835	29824	29824					0.09145618787488274
KTVNEKTGEIS	11	Unmodified	_KTVNEKTGEIS_					0	0	0		tr|A0A553SSE7|A0A553SSE7_NIACIBacterialIgdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02835PE=4SV=1	tr|A0A553SSE7|A0A553SSE7_NIACIBacterialIgdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02835PE=4SV=1	tr|A0A553SSE7|A0A553SSE7_NIACIBacterialIgdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02835PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	401.7381591796875	3	402.550587	1204.62993	1.5467	0.00062261	2.788	0.0011223	4.3347	0.0017449	402.5516006927623	62.816	1.6928	59.359	58.913	60.606	-3.4577					64	34	3	0	0	0	0.025759	1	4537	4537		19.627	0	1	219310			26644	34367	21809	21836	29825	29825					0.035801571183810665
KTVNKILQI	9	Unmodified	_KTVNKILQI_					0	0	0		nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72	nc|ENSG00000174780|O76094-2|SRP72	nc|ENSG00000174780|O76094-2|SRP72	MULTI-MSMS	OvCa9_classI_Rep3	3	528.8426513671875	2	528.842416	1055.67028	-0.08716	-4.6094E-05	-0.31234	-0.00016518	-0.3995	-0.00021127	528.8421592144327	72.302	1.8827	69.699	69.424	71.307	-2.6023					108	37	4	0	0	0	0.014964	2	3439	3439;3447		153.04	27.222	1	703400			26645	7490	21810	21837	29826;29827	29826					0.14467168299461264
KTVNKILQI	9	Unmodified	_KTVNKILQI_					0	0	0		nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72	nc|ENSG00000174780|O76094-2|SRP72	nc|ENSG00000174780|O76094-2|SRP72	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	528.842416	1055.67028	-0.23596	-0.00012479	-0.14714	-7.7814E-05	-0.3831	-0.0002026	528.8421928218222	72.071	1.5109	69.564	69.226	70.737	-2.5071	-0.19768	-0.0001657	NaN	153.04	74	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	490930			26646	7490	21810	21837							0.14467168299461264
KTVNKILQI	9	Unmodified	_KTVNKILQI_					0	0	0		nc|ENSG00000174780|O76094-2|SRP72;ENSG00000174780|ENST00000642900|SRP72	nc|ENSG00000174780|O76094-2|SRP72	nc|ENSG00000174780|O76094-2|SRP72	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	528.842416	1055.67028	-1.7011	-0.0008996	0.81408	0.00043052	-0.887	-0.00046908	528.8427383522746	73.417	1.3868	70.021	69.736	71.123	-3.3961	0.25968	0.00085097	NaN	153.04	68	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	513410			26647	7490	21810	21837							0.14467168299461264
KTVNNSSLV	9	Unmodified	_KTVNNSSLV_					0	0	0		ENSG00000196267|ENST00000682614|ZNF836	ENSG00000196267|ENST00000682614|ZNF836	ENSG00000196267|ENST00000682614|ZNF836	MULTI-SECPEP	OvCa9_classI_Rep3	3	480.29156494140625	2	481.269281	960.52401	-0.71249	-0.0003429	-4.0806	-0.0019639	-4.7931	-0.0023068	481.26635609009855	91.28	0.40383	89.256	89.079	89.483	-2.0241					10	7	2	0	0	0	0.027462	1	5730	5730		32.812	12.816	1	18855			26648	8583	21811	21838	29828	29828					0.042168660635638844
KTVPMPPLDA	10	Unmodified	_KTVPMPPLDA_					0	0	0			REV__nc|ENSG00000135870|Q5TC82-2|RC3H1	REV__nc|ENSG00000135870|Q5TC82-2|RC3H1	MULTI-MSMS	OvCa9_classI_Rep3	3	534.7916870117188	2	534.791535	1067.56852	3.0352	0.0016232	-3.1332	-0.0016756	-0.09798	-5.2399E-05	534.7896759823677	56.343	2.6096	53.193	52.451	55.06	-3.1504					179	83	3	0	0	0	0.73378	1	1577	1577		26.693	0	1	87189	+		26649	19330	21812	21839	29829	29829					0.037435538853969774
KTVQAVLTVPK	11	Unmodified	_KTVQAVLTVPK_					0	0	0		ENST00000572517.1_1_17:1679804-1680737:+|nuORF;SERPINF1|p.L329Hfs*11|1|0.07|ENSG00000132386|chr17:1776730-1776731|-/ACTACAGAATAGTCTTTTTT|frameshift_variant;ENSG00000132386|ENST00000254722|SERPINF1	ENST00000572517.1_1_17:1679804-1680737:+|nuORF	ENST00000572517.1_1_17:1679804-1680737:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	592.3740234375	2	592.374081	1182.73361	0.72908	0.00043189	-2.6716	-0.0015826	-1.9425	-0.0011507	592.37235559255	159.94	1.2378	159.94	159.57	160.81	0					71	24	5	0	0	0	0.71498	1	18732	18732		24.519	0	1	1417800			26650	4135	21813	21840	29830	29830					0.149551090166824
KTVQINIKI	9	Unmodified	_KTVQINIKI_					0	0	0			REV__nc|ENSG00000140470|Q8TE56-2|ADAMTS17	REV__nc|ENSG00000140470|Q8TE56-2|ADAMTS17	MULTI-MSMS	OvCa9_classI_Rep2	2	528.842041015625	2	528.842416	1055.67028	-0.23596	-0.00012479	-0.14714	-7.7814E-05	-0.3831	-0.0002026	528.8421928218222	72.071	1.5109	69.564	69.226	70.737	-2.5071					74	28	4	0	0	0	0.16562	1	5826	5826		82.241	0	1	490930	+		26651	19678	21814	21841	29831	29831					0.14467168299438526
KTVRNPKDK	9	Unmodified	_KTVRNPKDK_					0	0	0			REV__ENST00000526570.5_1_8:38271148-38285795:-|nuORF	REV__ENST00000526570.5_1_8:38271148-38285795:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.2693481445312	2	543.324922	1084.63529	-1.5725	-0.00085437	0.33479	0.0001819	-1.2377	-0.00067247	543.3250459838429	73.26	1.2951	69.864	69.446	70.741	-3.3961					64	26	3	0	0	0	0.027462	1	5633	5633		24.519	13.008	1	401670	+		26652	27142	21815	21842	29832	29832					0.09635925491488706
KTVRSIQEA	9	Unmodified	_KTVRSIQEA_					0	0	0		ENST00000527867.5_1_1:179853135-179857037:+|nuORF;ENST00000524653.1_1_1:179853135-179873887:+|nuORF;nc|ENSG00000143337|Q5JTV8-2|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-4|TOR1AIP1;ENSG00000143337|ENST00000606911|TOR1AIP1;nc|ENSG00000143337|Q5JTV8-3|TOR1AIP1	ENST00000527867.5_1_1:179853135-179857037:+|nuORF	ENST00000527867.5_1_1:179853135-179857037:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	516.2958984375	2	516.29583	1030.57711	0.9175	0.0004737	-1.1848	-0.0006117	-0.26729	-0.000138	516.295098499438	30.292	1.2323	27.582	27.36	28.592	-2.7097					62	24	4	0	0	0	0.26076	1	802	802		67.494	1.0644	1	509350			26653	5037	21816	21843	29833	29833					0.06304243846238933
KTVRTQNEL	9	Unmodified	_KTVRTQNEL_					0	0	0			REV__OR6B1|p.Y250Ifs*19|1|0.18|ENSG00000221813|chr7:144004743-144004743|C/-|frameshift_variant	REV__OR6B1|p.Y250Ifs*19|1|0.18|ENSG00000221813|chr7:144004743-144004743|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	544.808837890625	2	544.806562	1087.59857	-0.34732	-0.00018922	3.2478	0.0017694	2.9005	0.0015802	544.807894746868	78.293	2.6731	76.553	75.205	77.878	-1.7398					144	51	4	0	0	0	0.18193	1	6545	6545		79.451	5.196	1	701020	+		26654	23337	21817	21844	29834	29834					0.05827628874953916
KTVSWHFTL	9	Unmodified	_KTVSWHFTL_					0	0	0			REV__ENSG00000132182|ENST00000254508|NUP210	REV__ENSG00000132182|ENST00000254508|NUP210	MULTI-SECPEP	OvCa9_classI_Rep2	2	558.81689453125	2	559.803291	1117.59203	0.092512	5.1789E-05	-0.64592	-0.00036159	-0.55341	-0.0003098	559.8026312316582	46.523	1.1894	43.813	43.25	44.44	-2.7097					40	23	2	0	0	0	0.027461	1	2725	2725		40.778	0	1	33377	+		26655	19058	21818	21845	29835	29835					0.03793735714225477
KTVTINASSSR	11	Unmodified	_KTVTINASSSR_					0	0	0		ENSG00000073756|ENST00000367468|PTGS2	ENSG00000073756|ENST00000367468|PTGS2	ENSG00000073756|ENST00000367468|PTGS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.3140869140625	2	582.322576	1162.6306	-0.2826	-0.00016456	-2.0222	-0.0011776	-2.3048	-0.0013421	582.3214261982097	45	0.35674	45	44.932	45.289	0					13	7	2	0	0	0	0.025955	1	3073	3073		18.531	2.0579	1	178370			26656	1500	21819	21846	29836	29836					0.0557899655809706
KTVVKLAAR	9	Unmodified	_KTVVKLAAR_					0	0	0			REV__ENST00000257700.6_1_7:105172682-105177020:+|nuORF	REV__ENST00000257700.6_1_7:105172682-105177020:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3189392089844	2	493.329476	984.6444	0.11281	5.5653E-05	3.895	0.0019215	4.0079	0.0019772	493.33125344071	104.38	0.46767	102.94	102.71	103.18	-1.4347					17	8	3	0	0	0	0.027462	1	7294	7294		19.997	7.7899	1	36810	+		26657	23903	21820	21847	29837	29837					0.15146318847826024
KTVVQLAKNQH	11	Unmodified	_KTVVQLAKNQH_					0	0	0		CHID1|p.V180L|1|0.32|ENSG00000177830|chr11:900012-900012|C/G|missense_variant	CHID1|p.V180L|1|0.32|ENSG00000177830|chr11:900012-900012|C/G|missense_variant	CHID1|p.V180L|1|0.32|ENSG00000177830|chr11:900012-900012|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3695678710938	2	633.369861	1264.72517	-4.1446	-0.0026251	2.9938	0.0018962	-1.1508	-0.00072888	633.3716506579397	149.94	3.0119	148.99	147.85	150.86	-0.9512					218	59	5	0	0	0	0.70142	1	12680	12680		29.17	4.6509	1	281260			26658	233	21821	21848	29838	29838					0.1033955510006308
KTWALTLLLL	10	Unmodified	_KTWALTLLLL_					0	0	0		ENST00000405333.5_1_2:10581650-10581749:-|nuORF	ENST00000405333.5_1_2:10581650-10581749:-|nuORF	ENST00000405333.5_1_2:10581650-10581749:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	586.3788452148438	2	586.376092	1170.73763	0.27539	0.00016148	2.7747	0.001627	3.0501	0.0017885	586.377547850614	161.87	1.2169	161.87	161.26	162.48	0					63	23	3	0	0	0	0.48398	1	18991	18991		56.434	1.6691	1	183130			26659	11462	21822	21849	29839	29839					0.15909198510439637
KTWHIKAR	8	Unmodified	_KTWHIKAR_					0	0	0		ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295	ENSG00000166004|ENST00000325212|CEP295	ENSG00000166004|ENST00000325212|CEP295	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.3250732421875	2	520.311618	1038.60868	1.2019	0.00062534	3.8066	0.0019806	5.0085	0.002606	520.3133494951403	129.7	0.70244	129.7	129.4	130.1	0					21	14	2	0	0	0	0.028476	1	15029	15029		18.324	0	1	125170			26660	6628	21823	21850	29840	29840					0.09092281390826429
KTYAYGKLL	9	Unmodified	_KTYAYGKLL_					0	0	0		tr|A0A7D6VUS7|A0A7D6VUS7_9CLOT23SrRNA(Uracil(1939)-C(5))-methyltransferaseRlmDOS=ClostridiumintestinaleOX=36845GN=rlmDPE=3SV=1	tr|A0A7D6VUS7|A0A7D6VUS7_9CLOT23SrRNA(Uracil(1939)-C(5))-methyltransferaseRlmDOS=ClostridiumintestinaleOX=36845GN=rlmDPE=3SV=1	tr|A0A7D6VUS7|A0A7D6VUS7_9CLOT23SrRNA(Uracil(1939)-C(5))-methyltransferaseRlmDOS=ClostridiumintestinaleOX=36845GN=rlmDPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.7964477539062	2	528.808042	1055.60153	-0.95796	-0.00050658	-3.4542	-0.0018266	-4.4122	-0.0023332	528.8059841919661	58.749	0.50439	55.357	55.15	55.655	-3.392					15	9	2	0	0	0	0.027462	1	3878	3878		37.812	0	1	40672			26661	35198	21824	21851	29841	29841					0.07595503999755238
KTYERISEI	9	Unmodified	_KTYERISEI_					0	0	0			REV__tr|A0A7D6ZFA0|A0A7D6ZFA0_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16955PE=4SV=1	REV__tr|A0A7D6ZFA0|A0A7D6ZFA0_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16955PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	569.8075561523438	2	569.808771	1137.60299	-1.1862	-0.00067589	0.44632	0.00025432	-0.73985	-0.00042157	569.8088015615606	47.867	1.0435	45.157	44.836	45.879	-2.7097					42	20	3	0	0	0	0.44568	1	2959	2959		47.657	1.2006	1	154260	+		26662	31962	21825	21852	29842	29842					0.03969093297882864
KTYGEIFEK	9	Unmodified	_KTYGEIFEK_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.79443359375	2	557.792589	1113.57063	0.27729	0.00015467	-0.85736	-0.00047823	-0.58007	-0.00032356	557.792060892181	62.931	0.86786	59.473	59.21	60.078	-3.4577					30	17	2	0	0	0	0.066102	1	4403	4403		109.48	35.504	1	922840			26663	5549	21826	21853	29843	29843					0.01838305894852965
KTYGEIFEK	9	Unmodified	_KTYGEIFEK_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	557.792589	1113.57063	-1.0525	-0.00058706	0.52396	0.00029226	-0.52851	-0.0002948	557.792766130959	62.164	1.0024	59.405	58.882	59.884	-2.7593	-0.034356	0.00099725	NaN	109.48	55	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	264310			26664	5549	21826	21853							0.01838305894852965
KTYGKVTEV	9	Unmodified	_KTYGKVTEV_					0	0	0			REV__tr|A0A7D6ZXU9|A0A7D6ZXU9_9CLOTLemAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23395PE=3SV=1	REV__tr|A0A7D6ZXU9|A0A7D6ZXU9_9CLOTLemAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23395PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.7697143554688	2	512.787307	1023.56006	1.1846	0.00060747	0.036164	1.8544E-05	1.2208	0.00062602	512.7867661910356	74.64	0.51572	74.64	74.405	74.92	0					21	12	3	0	0	0	0.027462	1	7418	7418		14.137	0	1	594050	+		26665	32347	21827	21854	29844	29844					0.04922323240418791
KVAAALTK	8	Unmodified	_KVAAALTK_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	OvCa9_classI_Rep2	2	401.2618713378906	2	401.263271	800.511988	1.296	0.00052003	-4.2066	-0.001688	-2.9106	-0.0011679	401.26147123184654	136.26	1.7613	136.04	135.22	136.99	-0.22696					76	35	3	0	0	0	0.72896	1	13533	13533		37.159	1.5408	1	533840		+	26666	615	21828	21855	29845	29845					0.10375294111031508
KVAAALTK	8	Unmodified	_KVAAALTK_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	OvCa9_classI_Rep3	3	401.26220703125	2	401.263271	800.511988	-0.21441	-8.6037E-05	-2.9352	-0.0011778	-3.1496	-0.0012638	401.26203375308216	137.05	1.2653	135.96	135.51	136.78	-1.0858					61	25	3	0	0	0	0.74394	1	11157	11157		13.775	0	1	224680		+	26667	615	21828	21855	29846	29846					0.10375294111031508
KVAAALTK	8	Unmodified	_KVAAALTK_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	401.263271	800.511988	4.1232	0.0016545	-7.3693	-0.002957	-3.2461	-0.0013025	401.2602178856634	137.33	1.1523	135.79	135.52	136.67	-1.5437	-0.14069	-0.0020805	NaN	37.159	74	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	856570		+	26668	615	21828	21855							0.10375294111031508
KVADKVLEG	9	Unmodified	_KVADKVLEG_					0	0	0		ENST00000515682.5_1_4:8207046-8242679:+|nuORF;ENSG00000125089|ENST00000245105|SH3TC1;ENST00000513495.5_1_4:8230952-8235052:+|nuORF;ENST00000507801.1_1_4:8230952-8234403:+|nuORF;ENST00000508183.5_1_4:8230913-8237300:+|nuORF;ENST00000506360.5_1_4:8220037-8234255:+|nuORF;ENST00000502669.5_1_4:8220037-8239209:+|nuORF	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.7852783203125	2	479.782025	957.549496	1.4078	0.00067544	-1.025	-0.00049176	0.38283	0.00018367	479.7816242766973	85.53	1.5719	82.883	82.561	84.133	-2.6463					88	31	5	0	0	0	0.2422	1	7195	7195		69.628	2.134	1	453630			26669	3690	21829	21856	29847	29847					0.06902340586009359
KVADMALHY	9	Unmodified	_KVADMALHY_					0	0	0		nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF	nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-3|CCT8	MULTI-MSMS	OvCa9_classI_Rep2	2	524.2669067382812	2	524.268227	1046.5219	0.1945	0.00010197	-0.83038	-0.00043534	-0.63588	-0.00033337	524.2676521989473	70.306	1.7809	67.735	67.066	68.847	-2.5707					94	34	5	0	0	0	0.1804	4	5604	5604;5611;5622;5628		79.713	21.407	1	484180			26670	5830	21830	21857	29848;29849;29850;29851	29848					0.000501140541246059
KVADMALHY	9	Unmodified	_KVADMALHY_					0	0	0		nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF	nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-3|CCT8	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.2684326171875	2	524.268227	1046.5219	-1.4094	-0.00073893	0.41977	0.00022007	-0.98967	-0.00051885	524.2683138449125	71.409	2.1344	67.952	67.155	69.289	-3.4563					71	43	3	0	0	0	0.094616	2	5438	5438;5450		98.629	23.489	1	945340			26671	5830	21830	21857	29852;29853	29852					0.000501140541246059
KVADMALHY	9	Unmodified	_KVADMALHY_					0	0	0		nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF	nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-3|CCT8	MULTI-MATCH	OvCa9_classI_Rep3	3		2	524.268227	1046.5219	0.10123	5.307E-05	-0.53078	-0.00027827	-0.42955	-0.0002252	524.2678246009949	70.426	1.8567	67.706	67.402	69.259	-2.7196	-0.091545	-0.0001207	NaN	98.629	48	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24177			26672	5830	21830	21857							0.000501140541246059
KVADMALHY	9	Oxidation (M)	_KVADM(Oxidation (M))ALHY_		KVADM(1)ALHY		KVADM(53)ALHY	0	0	1		nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF	nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-3|CCT8	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.2675170898438	2	532.265684	1062.51682	-1.3451	-0.00071595	1.2804	0.00068152	-0.064684	-3.4429E-05	532.2661881211424	56.038	0.6578	52.744	52.412	53.07	-3.2944					32	12	3	0	0	0	0.38969	1	3569	3569		52.937	10.541	1	432350			26673	5830	21830	21858	29854	29854		189			-0.011941898085069624
KVADMALHY	9	Oxidation (M)	_KVADM(Oxidation (M))ALHY_					0	0	1		nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF	nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-3|CCT8	MULTI-MATCH	OvCa9_classI_Rep2	2		2	532.265684	1062.51682	-1.9387	-0.0010319	2.0615	0.0010973	0.12285	6.5388E-05	532.2665966456377	55.621	0.59482	52.817	52.482	53.077	-2.804	0.036866	0.00041058	NaN	52.937	32	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103510			26674	5830	21830	21858				189			-0.011941898085069624
KVAFGACE	8	Unmodified	_KVAFGACE_					0	0	0			REV__ENST00000535723.1_3_11:61560510-61560672:+|nuORF	REV__ENST00000535723.1_3_11:61560510-61560672:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	412.7039794921875	2	412.702189	823.389824	0.74793	0.00030867	2.4921	0.0010285	3.24	0.0013372	412.70357783628623	32.14	6.2924	32.14	31.559	37.851	0					232	132	4	0	0	0	0.67745	1	1488	1488		47.916	1.9636	1	839830	+		26675	27289	21831	21859	29855	29855					-0.028934909628333116
KVAFGSLAAN	10	Unmodified	_KVAFGSLAAN_					0	0	0		ENST00000405676.2_1_6:25140296-25141628:+|nuORF;NUP50|p.K188Ifs*2|1|0.39|ENSG00000093000|chr22:45178458-45178473|TAAAGACTATGAGAAA/-|frameshift_variant;ENST00000502634.1_1_5:20304521-20305535:-|nuORF;nc|ENSG00000093000|Q9UKX7-2|NUP50;ENSG00000093000|ENST00000347635|NUP50;ENST00000556933.1_1_14:65067322-65068336:-|nuORF	ENST00000405676.2_1_6:25140296-25141628:+|nuORF;ENST00000556933.1_1_14:65067322-65068336:-|nuORF	ENST00000556933.1_1_14:65067322-65068336:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	489.27557373046875	2	489.274367	976.53418	1.7707	0.00086637	0.39069	0.00019115	2.1614	0.0010575	489.27443564956394	82.844	1.1481	82.844	82.609	83.757	0					44	26	2	0	0	0	0.13777	1	8591	8591		104.06	19.141	1	2245400			26676	11468;13676	21832	21860	29856	29856					0.04497473788808293
KVAFGSLAAN	10	Unmodified	_KVAFGSLAAN_					0	0	0		ENST00000405676.2_1_6:25140296-25141628:+|nuORF;NUP50|p.K188Ifs*2|1|0.39|ENSG00000093000|chr22:45178458-45178473|TAAAGACTATGAGAAA/-|frameshift_variant;ENST00000502634.1_1_5:20304521-20305535:-|nuORF;nc|ENSG00000093000|Q9UKX7-2|NUP50;ENSG00000093000|ENST00000347635|NUP50;ENST00000556933.1_1_14:65067322-65068336:-|nuORF	ENST00000405676.2_1_6:25140296-25141628:+|nuORF;ENST00000556933.1_1_14:65067322-65068336:-|nuORF	ENST00000556933.1_1_14:65067322-65068336:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	489.274367	976.53418	-1.0957	-0.00053611	0.96	0.0004697	-0.13574	-6.6412E-05	489.27474381132527	84.774	1.0963	83.228	82.797	83.893	-1.5462	0.073463	0.00051998	NaN	104.06	42	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	360700			26677	11468;13676	21832	21860							0.04497473788808293
KVAFGSLAAN	10	Unmodified	_KVAFGSLAAN_					0	0	0		ENST00000405676.2_1_6:25140296-25141628:+|nuORF;NUP50|p.K188Ifs*2|1|0.39|ENSG00000093000|chr22:45178458-45178473|TAAAGACTATGAGAAA/-|frameshift_variant;ENST00000502634.1_1_5:20304521-20305535:-|nuORF;nc|ENSG00000093000|Q9UKX7-2|NUP50;ENSG00000093000|ENST00000347635|NUP50;ENST00000556933.1_1_14:65067322-65068336:-|nuORF	ENST00000405676.2_1_6:25140296-25141628:+|nuORF;ENST00000556933.1_1_14:65067322-65068336:-|nuORF	ENST00000556933.1_1_14:65067322-65068336:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	489.274367	976.53418	-1.4732	-0.0007208	1.2746	0.00062361	-0.19865	-9.7193E-05	489.2749084222084	85.496	1.3449	83.276	82.792	84.137	-2.2204	0.12186	0.00082779	NaN	104.06	50	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	592600			26678	11468;13676	21832	21860							0.04497473788808293
KVAFKKSAM	9	Unmodified	_KVAFKKSAM_					0	0	0			REV__ENSG00000149346|ENST00000334534|SLX4IP	REV__ENSG00000149346|ENST00000334534|SLX4IP	MULTI-MSMS	OvCa99_classI_Rep5	1	505.2976989746094	2	505.296788	1008.57902	-0.089711	-4.5331E-05	3.7562	0.001898	3.6665	0.0018527	505.2985791198611	22.246	0.53699	22.246	22.08	22.617	0					29	12	4	0	0	0	0.70177	1	208	208		17.365	1.7232	1	624720	+		26679	20159	21833	21861	29857	29857					0.0750758133049203
KVAGAATPK	9	Unmodified	_KVAGAATPK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MULTI-MSMS	OvCa9_classI_Rep2	2	421.7586364746094	2	421.758352	841.502152	1.3122	0.00055342	-1.0755	-0.0004536	0.23667	9.9818E-05	421.7577701350753	29.614	1.4673	26.904	26.682	28.15	-2.7097					69	29	4	0	0	0	0.0086488	7	737	725;731;737;747;753;765;771		176.09	51.493	1	542820			26680	3662	21834	21862	29858;29859;29860;29861;29862;29863;29864	29860					0.07506106105665822
KVAGILGVLAI	11	Unmodified	_KVAGILGVLAI_					0	0	0			REV__ENSG00000106537|ENST00000262067|TSPAN13	REV__ENSG00000106537|ENST00000262067|TSPAN13	MULTI-MSMS	OvCa9_classI_Rep2	2	527.3549194335938	2	527.35516	1052.69577	-0.14415	-7.6019E-05	0.083086	4.3816E-05	-0.061065	-3.2203E-05	527.3549928566696	133.68	0.83745	133.46	133.11	133.95	-0.22697					42	16	3	0	0	0	0.72466	1	13235	13235		19.997	0.6368	1	97589	+		26681	17808	21835	21863	29865	29865					0.17152642821906738
KVAGLVLKV	9	Unmodified	_KVAGLVLKV_					0	0	0		nc|ENSG00000135931|Q7Z3E5-2|ARMC9;ENSG00000135931|ENST00000611582|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	MULTI-MSMS	OvCa99_classI_Rep5	1	463.82440185546875	2	463.823495	925.632438	2.2393	0.0010386	-0.14779	-6.8549E-05	2.0915	0.0009701	463.8232775621532	76.343	0.60235	76.343	76.115	76.718	0					33	14	3	0	0	0	0.18193	1	7637	7637		79.451	2.6044	1	2731600			26682	4434	21836	21864	29866	29866					0.16664702104651496
KVAKGPAVGGL	11	Unmodified	_KVAKGPAVGGL_					0	0	0			REV__nc|ENSG00000112769|Q16363-2|LAMA4	REV__nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-MSMS	OvCa9_classI_Rep3	3	498.81298828125	2	498.813659	995.612765	-0.10557	-5.2658E-05	-0.22118	-0.00011033	-0.32674	-0.00016298	498.8134286419306	107.86	2.1308	106.67	106.38	108.51	-1.1978					94	40	3	0	0	0	0.22384	1	7680	7680		76.774	2.7994	1	572750	+		26683	18117	21837	21865	29867	29867					0.11478326093913438
KVAKPSVNI	9	Unmodified	_KVAKPSVNI_					0	0	0			REV__nc|ENSG00000136155|O95171-3|SCEL	REV__nc|ENSG00000136155|O95171-3|SCEL	MULTI-MSMS	OvCa9_classI_Rep2	2	478.2996826171875	2	478.300384	954.586216	-1.3958	-0.0006676	0.74282	0.00035529	-0.65296	-0.00031231	478.300797234432	52.175	1.9776	49.362	48.552	50.53	-2.8129					86	39	4	0	0	0	0.3076	1	3450	3450		62.107	1.9892	1	346960	+		26684	19363	21838	21866	29868	29868					0.10710637202555517
KVAKRNGRA	9	Unmodified	_KVAKRNGRA_					0	0	0			REV__nc|ENSG00000154429|Q6IQ19-2|CCSAP	REV__nc|ENSG00000154429|Q6IQ19-2|CCSAP	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.310302734375	2	500.312149	998.609745	-0.42284	-0.00021155	3.0425	0.0015222	2.6197	0.0013107	500.31329407144653	47.875	0.38927	47.875	47.551	47.941	0					15	8	2	0	0	0	0.027456	1	3464	3464		38.806	0	1	282460	+		26685	20382	21839	21867	29869	29869					0.11038495759748912
KVAKRYNGRLY	11	Unmodified	_KVAKRYNGRLY_					0	0	0			REV__nc|ENSG00000182973|Q9H9A5-4|CNOT10	REV__nc|ENSG00000182973|Q9H9A5-4|CNOT10	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.9246826171875	3	456.601727	1366.78335	0.2146	9.7986E-05	-3.6062	-0.0016466	-3.3916	-0.0015486	456.600046781794	31.951	0.44685	31.951	31.708	32.154	0					20	8	3	0	0	0	0.026113	1	1334	1334		18.531	2.5243	1	146120	+		26686	22330	21840	21868	29870	29870					0.11463236745385075
KVAKWNQHS	9	Unmodified	_KVAKWNQHS_					0	0	0			REV__nc|ENSG00000185090|Q5VSG8-2|MANEAL	REV__nc|ENSG00000185090|Q5VSG8-2|MANEAL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.8301391601562	2	549.296165	1096.57778	0.4283	0.00023526	-3.6047	-0.0019801	-3.1764	-0.0017448	549.2944711830296	84.2	0.9857	81.538	81.07	82.056	-2.6629					27	20	2	0	0	0	0.027343	1	6989	6989		79.451	5.196	1	35676	+		26687	22480	21841	21869	29871	29871					0.03335083285946894
KVALFGQDT	9	Unmodified	_KVALFGQDT_					0	0	0			REV__tr|A0A7D6VTU5|A0A7D6VTU5_9CLOTNitrite/sulfitereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22795PE=4SV=1	REV__tr|A0A7D6VTU5|A0A7D6VTU5_9CLOTNitrite/sulfitereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22795PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	490.7366027832031	2	489.766374	977.518196	0.44429	0.0002176	-0.1251	-6.127E-05	0.31919	0.00015633	489.76610262618425	78.535	1.9873	76.795	76.092	78.079	-1.7398					101	38	4	0	0	0	0.027462	1	6503	6503		39.253	20.928	1	127540	+		26688	31633	21842	21870	29872	29872					0.028537675519032746
KVALFGQDT	9	Unmodified	_KVALFGQDT_					0	0	0			REV__tr|A0A7D6VTU5|A0A7D6VTU5_9CLOTNitrite/sulfitereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22795PE=4SV=1	REV__tr|A0A7D6VTU5|A0A7D6VTU5_9CLOTNitrite/sulfitereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22795PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	489.766374	977.518196	-0.48446	-0.00023727	0.8628	0.00042257	0.37834	0.0001853	489.7666231322345	78.758	1.5031	76.405	76.048	77.551	-2.3527	-0.23794	0.00042406	NaN	31.53	94	29	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	400510	+		26689	31633	21842	21870							0.028537675519032746
KVALQHTKT	9	Unmodified	_KVALQHTKT_					0	0	0			REV__ENSG00000097096|ENST00000341460|SYDE2	REV__ENSG00000097096|ENST00000341460|SYDE2	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.7750854492188	2	513.308741	1024.60293	1.3815	0.00070913	-0.12344	-6.3362E-05	1.258	0.00064576	513.3085079667688	78.902	0.60729	78.902	78.668	79.276	0					21	13	2	0	0	0	0.027462	1	8004	8004		25.574	3.6142	1	376730	+		26690	17312	21843	21871	29873	29873					0.09161138088529697
KVALRSLPE	9	Unmodified	_KVALRSLPE_					0	0	0		ENSG00000103549|ENST00000324685|RNF40;nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;ENST00000566703.1_1_16:30776326-30777900:+|nuORF	ENSG00000103549|ENST00000324685|RNF40	ENSG00000103549|ENST00000324685|RNF40	MULTI-MSMS	OvCa9_classI_Rep3	3	506.811767578125	2	506.811116	1011.60768	-1.285	-0.00065125	-0.29635	-0.00015019	-1.5813	-0.00080144	506.8109472666925	100.58	3.0909	98.975	98.659	101.75	-1.6053					152	59	4	0	0	0	0.14855	2	6874	6874;6908		85.161	0.2453	1	2966100			26691	2330	21844	21872	29874;29875	29874					0.1023402223128187
KVANIILSY	9	Unmodified	_KVANIILSY_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11;RBFA-SPG11|2|fusion;RBFA-SPG11|1|fusion	nc|ENSG00000104133|Q96JI7-3|SPG11;RBFA-SPG11|2|fusion	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	OvCa9_classI_Rep2	2	510.8064270019531	2	510.808042	1019.60153	-0.66848	-0.00034146	0.00090626	4.6292E-07	-0.66757	-0.000341	510.8080315850244	98.975	2.1364	98.081	97.459	99.595	-0.89305					130	42	4	0	0	0	0.0094524	12	9003	8991;8997;9003;9009;9015;9021;9027;9033;9039;9051;9057;9063		171.38	72.01	1	3909300			26692	2354;15543	21845	21873	29876;29877;29878;29879;29880;29881;29882;29883;29884;29885;29886;29887	29878					0.09251503999757915
KVANIILSY	9	Unmodified	_KVANIILSY_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11;RBFA-SPG11|2|fusion;RBFA-SPG11|1|fusion	nc|ENSG00000104133|Q96JI7-3|SPG11;RBFA-SPG11|2|fusion	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	OvCa9_classI_Rep3	3	510.807373046875	2	510.808042	1019.60153	-0.57256	-0.00029247	-1.126	-0.00057515	-1.6985	-0.00086762	510.8073767914597	99.946	2.7442	98.261	97.829	100.57	-1.685					194	53	6	0	0	0	0.0094524	8	6742	6738;6742;6748;6754;6760;6766;6778;6790		171.38	72.01	1	4000100			26693	2354;15543	21845	21873	29888;29889;29890;29891;29892;29893;29894;29895	29889					0.09251503999757915
KVANIILSY	9	Unmodified	_KVANIILSY_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11;RBFA-SPG11|2|fusion;RBFA-SPG11|1|fusion	nc|ENSG00000104133|Q96JI7-3|SPG11;RBFA-SPG11|2|fusion	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.80853271484375	2	510.808042	1019.60153	-1.2224	-0.00062443	0.47995	0.00024516	-0.74249	-0.00037927	510.8082079723016	100.48	2.3584	98.214	97.775	100.13	-2.2665					158	46	6	0	0	0	0.0094524	5	8996	8974;8984;8996;9008;9020		171.38	59.737	1	4699600			26694	2354;15543	21845	21873	29896;29897;29898;29899;29900	29898					0.09251503999757915
KVAPAPAVV	9	Unmodified	_KVAPAPAVV_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	OvCa99_classI_Rep5	1	426.2713928222656	2	426.271096	850.527639	0.16713	7.1241E-05	0.44638	0.00019028	0.61351	0.00026152	426.27109725475805	60.75	0.7226	60.75	60.477	61.2	0					32	16	3	0	0	0	0.44294	1	5309	5309		47.916	12.715	1	1218700			26695	5398	21846	21874	29901	29901					0.09639580628083877
KVAPAPAVV	9	Unmodified	_KVAPAPAVV_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	426.271096	850.527639	-1.4246	-0.00060728	1.8911	0.00080612	0.46647	0.00019884	426.271764883705	63.521	1.2588	60.777	60.32	61.579	-2.7444	0.013761	0.001384	NaN	47.916	48	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112360			26696	5398	21846	21874							0.09639580628083877
KVAPAPAVV	9	Unmodified	_KVAPAPAVV_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	426.271096	850.527639	0.4019	0.00017132	-0.24309	-0.00010362	0.15881	6.7694E-05	426.2708614566583	64.237	1.4091	60.762	60.49	61.9	-3.475	-0.001003	-0.00043554	NaN	47.916	65	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	499620			26697	5398	21846	21874							0.09639580628083877
KVAPAPAVVK	10	Unmodified	_KVAPAPAVVK_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	OvCa9_classI_Rep2	2	490.3179016113281	2	490.318577	978.622602	0.1435	7.0363E-05	-0.35642	-0.00017476	-0.21292	-0.0001044	490.318244843414	46.136	1.2404	43.426	43.15	44.39	-2.7097					61	24	4	0	0	0	0.26424	3	2736	2731;2736;2741		85.161	39.189	1	292540			26698	5398	21847	21875	29902;29903;29904	29903					0.1324351409926976
KVAPAPAVVK	10	Unmodified	_KVAPAPAVVK_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.3191223144531	2	490.318577	978.622602	-0.247	-0.00012111	-0.3246	-0.00015916	-0.5716	-0.00028027	490.3183442735367	46.496	1.5317	43.424	43.136	44.668	-3.0724					84	29	4	0	0	0	0.044571	4	2443	2435;2443;2456;2469		131.03	64.602	1	1355400			26699	5398	21847	21875	29905;29906;29907;29908	29906					0.1324351409926976
KVAPAPAVVKK	11	Unmodified	_KVAPAPAVVKK_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.3654174804688	2	554.366059	1106.71756	0.55853	0.00030963	-1.0149	-0.0005626	-0.45633	-0.00025297	554.3653317784527	38.494	0.89203	35.568	35.354	36.246	-2.9264					43	17	4	0	0	0	0.34051	1	1511	1511		65.465	29.847	1	153320			26700	5398	21848	21876	29909	29909					0.1684744757046701
KVAPAPAVVKK	11	Unmodified	_KVAPAPAVVKK_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000424041.1_1_20:36073469-36073910:-|nuORF;ENST00000463740.5_1_9:136215098-136217195:+|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	554.366059	1106.71756	-0.8965	-0.00049699	0.61917	0.00034324	-0.27733	-0.00015374	554.3661742111444	38.233	0.64378	35.523	35.32	35.964	-2.7097	-0.022526	0.0012955	NaN	65.465	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36927			26701	5398	21848	21876							0.1684744757046701
KVAPKRPP	8	Unmodified	_KVAPKRPP_					0	0	0		ENSG00000255587|ENST00000612677|RAB44	ENSG00000255587|ENST00000612677|RAB44	ENSG00000255587|ENST00000612677|RAB44	MULTI-SECPEP	OvCa99_classI_Rep5	1	447.26531982421875	2	446.789987	891.565421	1.234	0.00055132	-1.2022	-0.00053715	0.031712	1.4169E-05	446.7892870405541	72.208	0.45517	72.208	71.956	72.412	0					15	10	2	0	0	0	0.028476	1	7007	7007		25.45	16.628	1	250760			26702	9459	21849	21877	29910	29910					0.1153009161355385
KVAQALCEDL	10	Unmodified	_KVAQALCEDL_					0	0	0		nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.E3356Afs*12|1|0.31|ENSG00000151914|chr6:56535225-56535226|-/CCAG|frameshift_variant	nc|ENSG00000151914|Q03001|DST	nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.8170776367188	2	545.284074	1088.5536	2.545	0.0013877	4.0353	0.0022004	6.5802	0.0035881	545.2862791170442	86.435	0.20029	86.435	86.271	86.471	0					7	4	2	0	0	0	0.026891	1	9118	9118		47.657	12.039	1	229540			26703	5594	21850	21878	29911	29911					0.012860620173796633
KVAQATKP	8	Unmodified	_KVAQATKP_					0	0	0		ENSG00000170748|ENST00000306904|RBMXL2	ENSG00000170748|ENST00000306904|RBMXL2	ENSG00000170748|ENST00000306904|RBMXL2	MULTI-MSMS	OvCa9_classI_Rep2	2	421.7584533691406	2	421.758352	841.502152	1.3122	0.00055342	-1.0755	-0.0004536	0.23667	9.9818E-05	421.7577701350753	29.614	1.4673	26.904	26.682	28.15	-2.7097					69	29	4	0	0	0	0.36941	2	742	719;742		94.006	3.6366	1	542820			26704	7131	21851	21879	29912;29913	29913					0.07506106105665822
KVAQQPLSL	9	Unmodified	_KVAQQPLSL_					0	0	0		nc|ENSG00000169129|Q8N4X5-2|AFAP1L2;ENSG00000169129|ENST00000304129|AFAP1L2;nc|ENSG00000169129|Q8N4X5-4|AFAP1L2	nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.82794189453125	2	492.297842	982.581131	-0.76206	-0.00037516	0.73987	0.00036424	-0.022187	-1.0923E-05	492.2980121663136	106.65	1.1476	104.77	104.49	105.64	-1.8785					35	21	2	0	0	0	0.027433	1	9808	9808		26.693	0	1	119630			26705	6979	21852	21880	29914	29914					0.08914333339953373
KVAQSLPK	8	Unmodified	_KVAQSLPK_					0	0	0			REV__nc|ENSG00000036530|Q9Y6A2-3|CYP46A1	REV__nc|ENSG00000036530|Q9Y6A2-3|CYP46A1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.2141418457031	2	435.774003	869.533452	0.47191	0.00020564	-0.087883	-3.8297E-05	0.38402	0.00016735	435.7739310015477	39.087	0.59649	36.161	35.898	36.495	-2.9264					15	11	2	0	0	0	0.028476	1	1591	1591		29.15	21.956	1	11973	+		26706	16607	21853	21881	29915	29915					0.09346679139764547
KVAQVLEPA	9	Unmodified	_KVAQVLEPA_					0	0	0			REV__nc|ENSG00000183091|P20929-4|NEB	REV__nc|ENSG00000183091|P20929-4|NEB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.2720947265625	2	477.784567	953.554582	-0.044472	-2.1248E-05	-1.4103	-0.00067381	-1.4547	-0.00069505	477.7835697901909	52.152	0.65668	48.944	48.641	49.298	-3.208					29	12	4	0	0	0	0.027462	1	3140	3140		15.642	0	1	127200	+		26707	22341	21854	21882	29916	29916					0.07594644448602139
KVARAILYV	9	Unmodified	_KVARAILYV_					0	0	0		nc|ENSG00000143093|Q5VSL9-2|STRIP1;ENSG00000143093|ENST00000369795|STRIP1;ENST00000540970.1_1_1:110581774-110582138:+|nuORF;nc|ENSG00000143093|Q5VSL9-4|STRIP1;STRIP1|p.L583Afs*6|1|0.11|ENSG00000143093|chr1:110049197-110049201|CTGCT/-|frameshift_variant	nc|ENSG00000143093|Q5VSL9-2|STRIP1	nc|ENSG00000143093|Q5VSL9-2|STRIP1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.8330078125	2	516.831852	1031.64915	-0.65486	-0.00033845	0.35515	0.00018355	-0.29971	-0.0001549	516.8318617162815	70.447	0.90444	70.447	70.089	70.994	0					49	22	4	0	0	0	0.46377	1	6757	6757		45.952	1.4209	1	2468100			26708	5010	21855	21883	29917	29917					0.1345920299061163
KVARGWSGL	9	Unmodified	_KVARGWSGL_					0	0	0		ENST00000579002.5_1_17:73257996-73258065:+|nuORF;ENSG00000125445|ENST00000245539|MRPS7	ENST00000579002.5_1_17:73257996-73258065:+|nuORF	ENST00000579002.5_1_17:73257996-73258065:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.779541015625	2	487.282526	972.550499	-0.25696	-0.00012521	1.6615	0.00080962	1.4045	0.00068441	487.2822511152635	35.618	0.32421	35.618	35.475	35.799	0					10	6	2	0	0	0	0.027462	1	1831	1831		24.203	0	1	28947			26709	3708	21856	21884	29918	29918					0.06312599745569969
KVARVFMQQL	10	Unmodified	_KVARVFMQQL_					0	0	0		nc|ENSG00000140474|Q6PHR2-3|ULK3;ENSG00000140474|ENST00000440863|ULK3;nc|ENSG00000140474|Q6PHR2-4|ULK3;nc|ENSG00000140474|Q6PHR2-2|ULK3;ENST00000570276.5_1_15:75132809-75135659:-|nuORF	nc|ENSG00000140474|Q6PHR2-3|ULK3;ENST00000570276.5_1_15:75132809-75135659:-|nuORF	ENST00000570276.5_1_15:75132809-75135659:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	407.2372131347656	3	407.237509	1218.6907	1.2553	0.0005112	-3.9327	-0.0016016	-2.6774	-0.0010904	407.23582197298515	57.088	1.197	57.088	56.662	57.859	0					53	27	4	0	0	0	0.32141	1	4800	4800		78.264	7.4476	1	1326900			26710	4846;13894	21857	21885	29919	29919					0.09010015687636042
KVASLLHQV	9	Unmodified	_KVASLLHQV_					0	0	0		nc|ENSG00000168884|Q8NFZ5-2|TNIP2;ENSG00000168884|ENST00000315423|TNIP2;ENST00000502256.1_1_4:2743986-2746461:-|nuORF;ENST00000505186.1_1_4:2743986-2747794:-|nuORF	nc|ENSG00000168884|Q8NFZ5-2|TNIP2	nc|ENSG00000168884|Q8NFZ5-2|TNIP2	MULTI-MSMS	OvCa99_classI_Rep5	1	497.80706787109375	2	497.805834	993.597115	-0.50171	-0.00024975	0.16866	8.3958E-05	-0.33305	-0.00016579	497.8057566612815	61.264	0.71473	61.264	61.028	61.743	0					38	16	4	0	0	0	0.049969	1	5389	5389		118.74	39.03	1	1555000			26711	6950	21858	21886	29920	29920					0.10006039576865078
KVAYRKIGT	9	Unmodified	_KVAYRKIGT_					0	0	0		nc|ENSG00000215421|Q9C0G0-3|ZNF407	nc|ENSG00000215421|Q9C0G0-3|ZNF407	nc|ENSG00000215421|Q9C0G0-3|ZNF407	MULTI-MSMS	OvCa9_classI_Rep2	2	518.3158569335938	2	518.319109	1034.62366	-0.11493	-5.9568E-05	-4.0503	-0.0020994	-4.1652	-0.0021589	518.3169369231541	136.26	0.73642	136.04	135.76	136.5	-0.22696					22	14	2	0	0	0	0.63422	1	13541	13541		27.882	2.4321	1	172490			26712	15315	21859	21887	29921	29921					0.10773728468188892
KVCHKDHEI	9	Unmodified	_KVCHKDHEI_					0	0	0		UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.Q2012Sfs*13|1|0.03|ENSG00000127481|chr1:19156309-19156310|-/A|frameshift_variant;UBR4|p.M2075Wfs*25|1|0.07|ENSG00000127481|chr1:19155519-19155519|A/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF	UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.7780151367188	2	554.782033	1107.54951	-1.881	-0.0010436	-2.5595	-0.00142	-4.4406	-0.0024636	554.7804236053477	148.65	1.6994	147.21	146.98	148.68	-1.4344					63	34	3	0	0	0	0.69895	1	14651	14651		18.324	0	1	77925			26713	3833	21860	21888	29922	29922					4.017314358861768E-05
KVCKKELEE	9	Unmodified	_KVCKKELEE_					0	0	0			REV__tr|A0A7D6ZGC5|A0A7D6ZGC5_9CLOTStageIIsporulationproteinEOS=ClostridiumintestinaleOX=36845GN=spoIIEPE=4SV=1	REV__tr|A0A7D6ZGC5|A0A7D6ZGC5_9CLOTStageIIsporulationproteinEOS=ClostridiumintestinaleOX=36845GN=spoIIEPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.2977294921875	2	553.299724	1104.5849	-0.30854	-0.00017072	-1.6192	-0.00089589	-1.9277	-0.0010666	553.297994158776	121.22	1.2876	119.87	119.59	120.88	-1.3479					45	24	2	0	0	0	0.48324	1	11435	11435		44.117	4.864	1	92303	+		26714	31993	21861	21889	29923	29923					0.0367863505148307
KVCPQVAVVL	10	Unmodified	_KVCPQVAVVL_					0	0	0		ENST00000462753.5_1_7:129841718-129841784:-|nuORF	ENST00000462753.5_1_7:129841718-129841784:-|nuORF	ENST00000462753.5_1_7:129841718-129841784:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	528.3174438476562	2	528.31772	1054.62089	-0.93969	-0.00049646	-2.0134	-0.0010637	-2.9531	-0.0015602	528.3165311420901	102.19	1.3583	100.67	100	101.36	-1.5211					57	25	3	0	0	0	0.59703	1	7016	7016		42.396	1.618	1	508870			26715	12210	21862	21890	29924	29924					0.09576137019007547
KVCQFILSM	9	Unmodified	_KVCQFILSM_					0	0	0		ENST00000483613.1_1_8:12428002-12428092:-|nuORF	ENST00000483613.1_1_8:12428002-12428092:-|nuORF	ENST00000483613.1_1_8:12428002-12428092:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.7426147460938	2	534.782656	1067.55076	0.10431	5.5785E-05	4.0301	0.0021553	4.1345	0.002211	534.7852962984862	65.035	0.48064	65.035	64.75	65.231	0					15	11	2	0	0	0	0.027462	1	5934	5934		34.173	5.023	1	342160			26716	12589	21863	21891	29925	29925					0.0196851535888527
KVCQKVEASG	10	Unmodified	_KVCQKVEASG_					0	0	0		ENST00000602599.1_1_2:61194615-61239025:-|nuORF;ENSG00000162927|ENST00000316752|PUS10	ENST00000602599.1_1_2:61194615-61239025:-|nuORF	ENST00000602599.1_1_2:61194615-61239025:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.2793579101562	2	524.776416	1047.53828	-1.5461	-0.00081136	1.7827	0.0009355	0.23656	0.00012414	524.777074109305	42.512	1.4463	39.532	39.011	40.458	-2.9804					89	27	6	0	0	0	0.53807	1	1967	1967		49.536	5.4192	1	359970			26717	6248	21864	21892	29926	29926					0.01641195220213376
KVCQKVEASG	10	Unmodified	_KVCQKVEASG_					0	0	0		ENST00000602599.1_1_2:61194615-61239025:-|nuORF;ENSG00000162927|ENST00000316752|PUS10	ENST00000602599.1_1_2:61194615-61239025:-|nuORF	ENST00000602599.1_1_2:61194615-61239025:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	524.776416	1047.53828	-0.92734	-0.00048665	8.6688	0.0045492	7.7414	0.0040625	524.7807935425745	39.558	0.25692	39.558	39.332	39.589	0	0.013214	0.0069338	NaN	49.536	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184990			26718	6248	21864	21892							0.01641195220213376
KVCSLPHAAL	10	Unmodified	_KVCSLPHAAL_					0	0	0			REV__ENST00000458236.1_1_6:29706172-29706229:-|nuORF	REV__ENST00000458236.1_1_6:29706172-29706229:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.7928466796875	2	519.791869	1037.56919	-0.39548	-0.00020557	4.0333	0.0020965	3.6378	0.0018909	519.7938318646319	121.84	4.0005	120.49	119.9	123.9	-1.3479					152	78	4	0	0	0	0.6104	1	11544	11544		40.778	0.71999	1	769080	+		26719	26056	21865	21893	29927	29927					0.05190393325119658
KVDANTKIVQ	10	Unmodified	_KVDANTKIVQ_					0	0	0			REV__ENSG00000183960|ENST00000328405|KCNH8	REV__ENSG00000183960|ENST00000328405|KCNH8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.3104248046875	2	558.324588	1114.63462	-0.085002	-4.7459E-05	-0.47401	-0.00026465	-0.55902	-0.00031211	558.3243112453825	71.325	0.87984	67.868	67.58	68.46	-3.4563					42	17	3	0	0	0	0.026968	1	5477	5477		22.58	5.1116	1	130080	+		26720	22395	21866	21894	29928	29928					0.08189086051788763
KVDANTKIVQ	10	Unmodified	_KVDANTKIVQ_					0	0	0			REV__ENSG00000183960|ENST00000328405|KCNH8	REV__ENSG00000183960|ENST00000328405|KCNH8	MULTI-MATCH	OvCa9_classI_Rep2	2		2	558.324588	1114.63462	0.57851	0.000323	-0.98182	-0.00054818	-0.40331	-0.00022518	558.3239522455823	70.237	0.90645	67.666	67.311	68.218	-2.5707	-0.10111	-0.00015569	NaN	22.58	42	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95644	+		26721	22395	21866	21894							0.08189086051788763
KVDEKRDKL	9	Unmodified	_KVDEKRDKL_					0	0	0			REV__SHOX2|p.A127V|1|0.24|ENSG00000168779|chr3:158102853-158102853|G/A|missense_variant	REV__SHOX2|p.A127V|1|0.24|ENSG00000168779|chr3:158102853-158102853|G/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	565.3087158203125	2	565.830037	1129.64552	-0.70341	-0.00039801	1.9575	0.0011076	1.2541	0.00070962	565.83075527558	97.601	1.0548	95.841	95.465	96.52	-1.7595					52	20	3	0	0	0	0.027295	1	6532	6532		84.916	0	1	108830	+		26722	29360	21867	21895	29929	29929					0.0858848842608495
KVDELVPKPSN	11	Unmodified	_KVDELVPKPSN_					0	0	0			REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF;REV__nc|ENSG00000182670|P53804-3|TTC3	REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	613.348876953125	2	613.342978	1224.6714	1.3203	0.00080977	0.35248	0.00021619	1.6727	0.001026	613.3436121753967	145.05	0.53041	145.05	144.79	145.32	0					22	10	3	0	0	0	0.66495	1	16973	16973		38.754	1.2454	1	127520	+		26723	25391;22310	21868	21896	29930	29930					0.06805337877722195
KVDIGLLPS	9	Unmodified	_KVDIGLLPS_					0	0	0		nc|ENSG00000111877|Q9NXL9-4|MCM9;ENSG00000111877|ENST00000619706|MCM9	nc|ENSG00000111877|Q9NXL9-4|MCM9	nc|ENSG00000111877|Q9NXL9-4|MCM9	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.785400390625	2	471.286943	940.559333	2.8935	0.0013637	-0.23699	-0.00011169	2.6565	0.001252	471.286541772487	96.346	0.50308	96.346	96.039	96.543	0					15	11	2	0	0	0	0.027461	1	10568	10568		49.442	0	1	413290			26724	2860	21869	21897	29931	29931					0.0866752859137705
KVDQLLIVK	9	Unmodified	_KVDQLLIVK_					0	0	0			REV__tr|A0A7D6VR83|A0A7D6VR83_9CLOTLargeribosomalsubunitproteinbL9OS=ClostridiumintestinaleOX=36845GN=rplIPE=3SV=1	REV__tr|A0A7D6VR83|A0A7D6VR83_9CLOTLargeribosomalsubunitproteinbL9OS=ClostridiumintestinaleOX=36845GN=rplIPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	528.3465576171875	2	528.344792	1054.67503	2.2568	0.0011924	-0.52445	-0.00027709	1.7324	0.00091529	528.3445243532176	87.69	1.8968	87.69	87.378	89.275	0					154	45	5	0	0	0	0.12515	1	9396	9396		90.37	2.6734	1	60651000	+		26725	31396	21870	21898	29932	29932					0.14988052442231492
KVDRDNLD	8	Unmodified	_KVDRDNLD_					0	0	0		tr|A0A7D6W0F9|A0A7D6W0F9_9CLOTLow-specificityL-threoninealdolaseOS=ClostridiumintestinaleOX=36845GN=ltaEPE=3SV=1	tr|A0A7D6W0F9|A0A7D6W0F9_9CLOTLow-specificityL-threoninealdolaseOS=ClostridiumintestinaleOX=36845GN=ltaEPE=3SV=1	tr|A0A7D6W0F9|A0A7D6W0F9_9CLOTLow-specificityL-threoninealdolaseOS=ClostridiumintestinaleOX=36845GN=ltaEPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	487.7496032714844	2	487.748713	973.482873	-0.51789	-0.0002526	0.20081	9.7946E-05	-0.31708	-0.00015466	487.74867639590553	48.521	1.4312	48.521	48.204	49.635	0					65	32	4	0	0	0	0.30448	1	3582	3582		106.42	0	1	3318700			26726	35377	21871	21899	29933	29933					-0.00492894975911895
KVDRFLYH	8	Unmodified	_KVDRFLYH_					0	0	0		nc|ENSG00000156510|Q2TB90-3|HKDC1;nc|ENSG00000156510|Q2TB90-2|HKDC1;ENSG00000156510|ENST00000354624|HKDC1;HKDC1|p.V440Pfs*51|1|0.33|ENSG00000156510|chr10:69248475-69248485|TGTCCGCTTCC/-|frameshift_variant	nc|ENSG00000156510|Q2TB90-3|HKDC1	nc|ENSG00000156510|Q2TB90-3|HKDC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.3251342773438	2	539.295633	1076.57671	-0.94095	-0.00050745	-0.37326	-0.0002013	-1.3142	-0.00070875	539.2953637050231	27.33	0.6482	27.33	27.043	27.691	0					19	12	2	0	0	0	0.028476	1	787	787		29.15	0	1	41267			26727	5845	21872	21900	29934	29934					0.04148868917013715
KVDSLNLQN	9	Unmodified	_KVDSLNLQN_					0	0	0		nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L	nc|ENSG00000009413|O60673-2|REV3L	nc|ENSG00000009413|O60673-2|REV3L	MULTI-MSMS	OvCa99_classI_Rep5	1	515.7802734375	2	515.780013	1029.54547	1.0439	0.00053842	-2.1842	-0.0011266	-1.1403	-0.00058815	515.7786163340129	146.25	0.59102	146.25	146.03	146.62	0					27	11	3	0	0	0	0.35694	1	17115	17115		56.434	4.906	1	116250			26728	929	21873	21901	29935	29935					0.03188251092274186
KVDVIHEKN	9	Unmodified	_KVDVIHEKN_					0	0	0		ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	MULTI-MSMS	OvCa99_classI_Rep5	1	541.3033447265625	2	541.303655	1080.59276	1.3945	0.00075487	2.3422	0.0012678	3.7367	0.0020227	541.3044161703891	111.35	1.0283	111.35	110.76	111.79	0					59	22	4	0	0	0	0.5811	1	12614	12614		34.173	1.3601	1	1550700			26729	9220	21874	21902	29936	29936					0.055685303633026706
KVEALFARAR	10	Unmodified	_KVEALFARAR_					0	0	0			REV__ENSG00000121764|ENST00000403528|HCRTR1	REV__ENSG00000121764|ENST00000403528|HCRTR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.8142700195312	2	580.848564	1159.68258	-1.475	-0.00085676	-0.18948	-0.00011006	-1.6645	-0.00096682	581.3502232738623	44.146	0.30619	44.146	43.909	44.215	0					9	6	2	0	0	0	0.027088	1	2947	2947		14.137	0	1	108120	+		26730	18555	21875	21903	29937	29937					0.10912204762485089
KVEARYTF	8	Unmodified	_KVEARYTF_					0	0	0			REV__nc|ENSG00000166557|Q9Y3Q3-2|TMED3	REV__nc|ENSG00000166557|Q9Y3Q3-2|TMED3	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.81341552734375	2	507.274367	1012.53418	-0.98399	-0.00049915	-3.7889	-0.001922	-4.7729	-0.0024212	507.27208370518497	57.059	0.9412	54.267	53.832	54.773	-2.7921					39	18	3	0	0	0	0.028476	1	4107	4107		26.693	0	1	46522	+		26731	21206	21876	21904	29938	29938					0.028414737888056152
KVEAWSPLAN	10	Unmodified	_KVEAWSPLAN_					0	0	0		tr|A0A553SG02|A0A553SG02_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_09805PE=4SV=1	tr|A0A553SG02|A0A553SG02_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_09805PE=4SV=1	tr|A0A553SG02|A0A553SG02_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_09805PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.8031616210938	2	557.798206	1113.58186	0.12473	6.9573E-05	-0.20401	-0.0001138	-0.079283	-4.4224E-05	557.7978713463458	33.309	0.64268	33.309	32.989	33.632	0					28	12	3	0	0	0	0.02663	1	1558	1558		35.152	7.2698	1	243560			26732	33100	21877	21905	29939	29939					0.02961127988987755
KVEDALSYLDQ	11	Unmodified	_KVEDALSYLDQ_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	428.2568664550781	3	427.550475	1279.6296	0.35258	0.00015075	-2.7983	-0.0011964	-2.4458	-0.0010457	427.8841062104122	62.176	0.53578	58.719	58.475	59.011	-3.4577					17	10	3	0	0	0	0.025298	1	4295	4295		24.276	6.5544	1	23401			26733	7004	21878	21906	29940	29940					0.000967373985076847
KVEDALSYLDQ	11	Unmodified	_KVEDALSYLDQ_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MATCH	OvCa9_classI_Rep2	2		3	427.550475	1279.6296	-1.4032	-0.00059992	-1.955	-0.00083585	-3.3581	-0.0014358	427.5496378683121	61.227	0.57492	58.467	58.254	58.829	-2.7593	-0.12551	0.00051823	NaN	24.276	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8748			26734	7004	21878	21906							0.000967373985076847
KVEEKLLAI	9	Unmodified	_KVEEKLLAI_					0	0	0			REV__tr|A0A553SM50|A0A553SM50_NIACIBifunctionalaldolase/short-chaindehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_21905PE=3SV=1	REV__tr|A0A553SM50|A0A553SM50_NIACIBifunctionalaldolase/short-chaindehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_21905PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	522.8115844726562	2	521.828975	1041.6434	0.84485	0.00044087	-1.4968	-0.0007811	-0.652	-0.00034023	521.8281534234953	119.79	0.73793	118.77	118.63	119.36	-1.0271					21	14	2	0	0	0	0.027462	1	9110	9110		26.693	0	1	26487	+		26735	30295	21879	21907	29941	29941					0.12424059688282796
KVEELQLPL	9	Unmodified	_KVEELQLPL_					0	0	0		tr|A0A553SJN3|A0A553SJN3_NIACIAdeninedeaminaseOS=NialliacirculansOX=1397GN=adePE=3SV=1	tr|A0A553SJN3|A0A553SJN3_NIACIAdeninedeaminaseOS=NialliacirculansOX=1397GN=adePE=3SV=1	tr|A0A553SJN3|A0A553SJN3_NIACIAdeninedeaminaseOS=NialliacirculansOX=1397GN=adePE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	534.8187255859375	2	534.818607	1067.62266	-5.0006	-0.0026744	4.3349	0.0023184	-0.66564	-0.000356	534.8210524896705	155.66	0.53845	154.59	154.4	154.94	-1.073					27	16	2	0	0	0	0.65371	1	13394	13394		25.574	1.3713	1	27276			26736	33521	21880	21908	29942	29942					0.09155469308620923
KVEEWSVKDL	10	Unmodified	_KVEEWSVKDL_					0	0	0			REV__ENST00000506579.5_1_5:140056223-140057407:-|nuORF	REV__ENST00000506579.5_1_5:140056223-140057407:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	617.3311767578125	2	616.829703	1231.64485	2.6624	0.0016423	-1.2002	-0.0007403	1.4623	0.00090196	616.8290752110601	100.97	0.66777	100.97	100.73	101.4	0					37	15	3	0	0	0	0.45953	1	11197	11197		59.931	1.7009	1	2758500	+		26737	21539	21881	21909	29943	29943					0.0382964898640239
KVEEWSVKDL	10	Unmodified	_KVEEWSVKDL_					0	0	0			REV__ENST00000506579.5_1_5:140056223-140057407:-|nuORF	REV__ENST00000506579.5_1_5:140056223-140057407:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	616.829703	1231.64485	-1.7545	-0.0010822	0.73205	0.00045155	-1.0225	-0.00063068	616.8300055032012	101.4	0.94183	100.63	100.37	101.31	-0.76401	-0.28813	0.0016602	NaN	59.931	41	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114630	+		26738	21539	21881	21909							0.0382964898640239
KVEEWSVKDL	10	Unmodified	_KVEEWSVKDL_					0	0	0			REV__ENST00000506579.5_1_5:140056223-140057407:-|nuORF	REV__ENST00000506579.5_1_5:140056223-140057407:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	616.829703	1231.64485	0.79839	0.00049247	-2.8924	-0.0017841	-2.0941	-0.0012917	616.8277982601068	102.69	0.31191	101.16	101	101.31	-1.5211	0.24399	-0.0028112	NaN	59.931	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17965	+		26739	21539	21881	21909							0.0382964898640239
KVEISAILII	10	Unmodified	_KVEISAILII_					0	0	0			REV__ENST00000545721.1_1_11:71719136-71719322:-|nuORF	REV__ENST00000545721.1_1_11:71719136-71719322:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	549.8623046875	2	549.860275	1097.706	1.2204	0.00067105	1.1209	0.00061635	2.3413	0.0012874	549.860835672545	147.18	0.492	147.18	146.96	147.45	0					15	9	2	0	0	0	0.53807	1	17223	17223		49.536	0.094497	1	140670	+		26740	27411	21882	21910	29944	29944					0.16105205756480245
KVEISAILII	10	Unmodified	_KVEISAILII_					0	0	0			REV__ENST00000545721.1_1_11:71719136-71719322:-|nuORF	REV__ENST00000545721.1_1_11:71719136-71719322:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	549.860275	1097.706	1.2204	0.00067105	1.1209	0.00061635	2.3413	0.0012874	549.860835672545	147.18	0.492	147.18	146.96	147.45	0	0	0	NaN	49.536	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140670	+		26741	27411	21882	21910							0.16105205756480245
KVEKGHTRVE	10	Unmodified	_KVEKGHTRVE_					0	0	0			REV__L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|132|3|sense	REV__L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|132|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	591.2958984375	2	591.833111	1181.65167	3.3251	0.0019679	1.6635	0.00098449	4.9886	0.0029524	591.834112105426	88.532	0.67156	88.532	88.212	88.883	0					30	15	3	0	0	0	0.027033	1	9454	9454		27.047	3.5246	1	466480	+		26742	28508	21883	21911	29945	29945					0.06811006657608232
KVEKSVAR	8	Unmodified	_KVEKSVAR_					0	0	0			REV__ENST00000508867.5_1_5:74842847-74877278:+|nuORF	REV__ENST00000508867.5_1_5:74842847-74877278:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.25390625	2	458.782359	915.550165	-0.42851	-0.00019659	0.5147	0.00023614	0.086191	3.9543E-05	458.7824535477061	41.482	0.65752	41.482	41.24	41.897	0					33	14	4	0	0	0	0.028476	1	2618	2618		24.519	6.1948	1	1207100	+		26743	18572	21884	21912	29946	29946					0.08901180025713984
KVEKVIVKPE	10	Unmodified	_KVEKVIVKPE_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.3109130859375	2	584.868631	1167.72271	0.73248	0.0004284	0.33208	0.00019423	1.0646	0.00062263	584.8691454078187	157.07	0.40089	157.07	156.85	157.25	0					11	7	2	0	0	0	0.027145	1	18388	18388		31.53	2.3803	1	14004	+		26744	21314	21885	21913	29947	29947					0.1455570664240895
KVEPLRKLI	9	Unmodified	_KVEPLRKLI_					0	0	0			REV__tr|A0A553SGB0|A0A553SGB0_NIACI23SrRNA(Uracil(1939)-C(5))-methyltransferaseRlmDOS=NialliacirculansOX=1397GN=rlmDPE=3SV=1	REV__tr|A0A553SGB0|A0A553SGB0_NIACI23SrRNA(Uracil(1939)-C(5))-methyltransferaseRlmDOS=NialliacirculansOX=1397GN=rlmDPE=3SV=1	MSMS	OvCa9_classI_Rep4_	4	548.3670654296875	2	548.366059	1094.71756	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.664	1	65.174	64.674	65.674	-3.4902								0	0	0	0.076951	1	5104	5104		74.255	7.8258	1		+		26745	29679	21886	21914	29948	29948					0.17399447570483062
KVERALIR	8	Unmodified	_KVERALIR_					0	0	0			REV__ENSG00000170832|ENST00000300896|USP32;REV__ENST00000425211.5_1_17:18418869-18422825:-|nuORF	REV__ENSG00000170832|ENST00000300896|USP32	MULTI-MSMS	OvCa9_classI_Rep2	2	492.81732177734375	2	492.819276	983.623999	-1.0524	-0.00051866	0.60887	0.00030006	-0.44358	-0.0002186	492.81937696825383	61.985	2.6287	59.225	58.882	61.511	-2.7593					139	50	4	0	0	0	0.61436	3	4618	4618;4630;4635		60.972	7.6205	1	798600	+		26746	21564;18889	21887	21915	29949;29950;29951	29949					0.1315314818804154
KVERKWPNVE	10	Unmodified	_KVERKWPNVE_					0	0	0			REV__ENSG00000101474|ENST00000217456|APMAP	REV__ENSG00000101474|ENST00000217456|APMAP	MULTI-MSMS	OvCa9_classI_Rep4_	4	643.3599853515625	2	642.856586	1283.69862	-0.029427	-1.8917E-05	4.1477	0.0026664	4.1183	0.0026474	642.8584568770414	117.19	1.8195	115.83	114.89	116.71	-1.3645					73	34	4	0	0	0	0.62712	1	10962	10962		38.754	2.436	1	103900	+		26747	17504	21888	21916	29952	29952					0.06811866208749962
KVERKWPNVE	10	Unmodified	_KVERKWPNVE_					0	0	0			REV__ENSG00000101474|ENST00000217456|APMAP	REV__ENSG00000101474|ENST00000217456|APMAP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	642.856586	1283.69862	-1.6686	-0.0010727	5.3058	0.0034109	3.6372	0.0023382	642.8596039379473	116	1.3856	115.88	115.34	116.73	-0.11777	0.010637	0.0004174	NaN	38.754	57	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72846	+		26748	17504	21888	21916							0.06811866208749962
KVERKWPNVE	10	Unmodified	_KVERKWPNVE_					0	0	0			REV__ENSG00000101474|ENST00000217456|APMAP	REV__ENSG00000101474|ENST00000217456|APMAP	MULTI-MATCH	OvCa9_classI_Rep3	3		2	642.856586	1283.69862	-0.9685	-0.00062261	4.9461	0.0031796	3.9775	0.002557	642.8591032958201	116.93	1.5343	115.9	115.15	116.69	-1.0324	0.03156	-4.5115E-05	NaN	38.754	58	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105560	+		26749	17504	21888	21916							0.06811866208749962
KVERKWPNVE	10	Unmodified	_KVERKWPNVE_					0	0	0			REV__ENSG00000101474|ENST00000217456|APMAP	REV__ENSG00000101474|ENST00000217456|APMAP	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	642.856586	1283.69862	-0.029427	-1.8917E-05	4.1477	0.0026664	4.1183	0.0026474	642.8584568770414	117.19	1.8195	115.83	114.89	116.71	-1.3645	-0.042197	-0.0010716	NaN	38.754	73	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103900	+		26750	17504	21888	21916							0.06811866208749962
KVESTKTDSR	10	Unmodified	_KVESTKTDSR_					0	0	0		ENSG00000166794|ENST00000300026|PPIB	ENSG00000166794|ENST00000300026|PPIB	ENSG00000166794|ENST00000300026|PPIB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.8567504882812	2	575.806759	1149.59897	-1.2006	-0.00069133	-1.5535	-0.00089454	-2.7542	-0.0015859	575.8058252746728	69.808	2.0898	66.327	65.96	68.05	-3.4812					121	42	4	0	0	0	0.026968	1	5357	5357		29.17	12.697	1	3004400			26751	6712	21889	21917	29953	29953					0.03015003804148364
KVETNRKLS	9	Unmodified	_KVETNRKLS_					0	0	0			REV__ENSG00000196110|ENST00000591998|ZNF699	REV__ENSG00000196110|ENST00000591998|ZNF699	MULTI-MSMS	OvCa99_classI_Rep5	1	537.8201904296875	2	537.81693	1073.61931	2.0468	0.0011008	3.8432	0.0020669	5.89	0.0031678	537.818792319545	117.79	0.74255	117.79	117.51	118.25	0					35	15	3	0	0	0	0.42576	1	13502	13502		49.536	5.1589	1	236260	+		26752	22783	21890	21918	29954	29954					0.08544219254622476
KVEVKNAKD	9	Unmodified	_KVEVKNAKD_					0	0	0		tr|A0A553SJ00|A0A553SJ00_NIACINAD-dependentmalicenzymeOS=NialliacirculansOX=1397GN=CEQ21_15820PE=3SV=1	tr|A0A553SJ00|A0A553SJ00_NIACINAD-dependentmalicenzymeOS=NialliacirculansOX=1397GN=CEQ21_15820PE=3SV=1	tr|A0A553SJ00|A0A553SJ00_NIACINAD-dependentmalicenzymeOS=NialliacirculansOX=1397GN=CEQ21_15820PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.7984008789062	2	515.798206	1029.58186	-0.66319	-0.00034207	-0.2229	-0.00011497	-0.88609	-0.00045704	515.7978583714896	38.694	0.66698	38.694	38.44	39.107	0					26	14	3	0	0	0	0.21231	1	2220	2220		74.255	0	1	556570			26753	33447	21891	21919	29955	29955					0.06825127989009161
KVFAGYYTK	9	Unmodified	_KVFAGYYTK_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MSMS	OvCa9_classI_Rep4_	4	538.79345703125	2	538.792392	1075.57023	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.881	1	54.536	54.036	55.036	-3.3449								0	0	0	0.024858	1	3781	3781		101.46	35.031	1				26754	5651	21892	21920	29956	29956					0.03546930965649153
KVFAKPEIPVI	11	Unmodified	_KVFAKPEIPVI_					0	0	0		ENSG00000153283|ENST00000352690|CD96;nc|ENSG00000153283|P40200|CD96	ENSG00000153283|ENST00000352690|CD96	ENSG00000153283|ENST00000352690|CD96	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.26220703125	3	414.260308	1239.7591	0.073708	3.0534E-05	3.7672	0.0015606	3.841	0.0015912	414.2618187943835	20.482	1.3692	19.143	18.851	20.22	-1.3386					77	27	4	0	0	0	0.72469	1	69	69		19.627	0.36425	1	397370			26755	5674	21893	21921	29957	29957					0.14880583539115833
KVFAMCGETS	10	Unmodified	_KVFAMCGETS_					0	0	0			REV__ENST00000491018.1_1_9:123921018-123923571:+|nuORF	REV__ENST00000491018.1_1_9:123921018-123923571:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.619384765625	2	536.743728	1071.4729	-0.078933	-4.2367E-05	3.7446	0.0020099	3.6657	0.0019675	537.2483682253205	60.707	1.2624	60.707	60.238	61.501	0					45	29	2	0	0	0	0.026994	1	5267	5267		19.104	8.8383	1	326530	+		26756	26666	21894	21922	29958	29958					-0.05997542297131986
KVFCVTLLL	9	Unmodified	_KVFCVTLLL_					0	0	0			REV__nc|ENSG00000134121|O00533|CHL1	REV__nc|ENSG00000134121|O00533|CHL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.3163452148438	2	518.317189	1034.61982	2.0408	0.0010578	-2.584	-0.0013393	-0.54319	-0.00028155	518.3157944372941	136.58	3.063	135.03	133.61	136.67	-1.5437					148	63	3	0	0	0	0.68424	1	13258	13258		21.96	2.5999	1	141910	+		26757	19176	21895	21923	29959	29959					0.10389922650119843
KVFDAKPSAK	10	Unmodified	_KVFDAKPSAK_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.8182373046875	2	545.816399	1089.61824	0.43426	0.00023703	-0.87838	-0.00047944	-0.44412	-0.00024241	545.8158518153542	37.414	0.9482	34.521	34.242	35.19	-2.8925					42	18	3	0	0	0	0.33877	1	1371	1371		76.17	6.5421	1	146830			26758	5106	21896	21924	29960	29960					0.07702004885709357
KVFDAKPSAK	10	Unmodified	_KVFDAKPSAK_					0	0	0		nc|ENSG00000143889|Q8WVV9-5|HNRNPLL;nc|ENSG00000143889|Q8WVV9-4|HNRNPLL;ENSG00000143889|ENST00000449105|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	nc|ENSG00000143889|Q8WVV9-5|HNRNPLL	MULTI-MATCH	OvCa9_classI_Rep2	2		2	545.816399	1089.61824	-2.2243	-0.0012141	2.1995	0.0012005	-0.024772	-1.3521E-05	545.8174753657912	37.564	0.73697	34.854	34.583	35.32	-2.7097	0.16652	0.0013441	NaN	76.17	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40034			26759	5106	21896	21924							0.07702004885709357
KVFDGIPPPY	10	Unmodified	_KVFDGIPPPY_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;nc|ENSG00000293056|Q6NVV1|RPL13AP3;ENST00000468655.1_1_19:49994004-49994437:+|nuORF;ENST00000472481.5_1_19:49990877-49994169:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.8074951171875	2	566.8055	1131.59645	0.42274	0.00023961	-0.46397	-0.00026298	-0.041231	-2.337E-05	566.8051055015428	103.17	3.0728	100.97	100.04	103.12	-2.1994					161	58	4	0	0	0	0.28845	3	9293	9281;9293;9317		82.241	10.945	1	392830			26760	4978	21897	21925	29961;29962;29963	29962					0.03591200137134365
KVFEQVLIN	9	Unmodified	_KVFEQVLIN_					0	0	0			REV__ENSG00000096968|ENST00000381652|JAK2	REV__ENSG00000096968|ENST00000381652|JAK2	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3165893554688	2	545.318774	1088.623	-2.8527	-0.0015556	-0.96726	-0.00052747	-3.8199	-0.0020831	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.64427	1	11696	11696		26.693	0	1	337600	+		26761	17310	21898	21926	29964	29964					0.08222889028479585
KVFFIATIF	9	Unmodified	_KVFFIATIF_					0	0	0			REV__tr|A0A7D7AB64|A0A7D7AB64_9CLOTCation-transportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14125PE=4SV=1	REV__tr|A0A7D7AB64|A0A7D7AB64_9CLOTCation-transportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14125PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7980346679688	2	543.323328	1084.6321	1.3251	0.00071995	-1.1586	-0.00062948	0.16652	9.0474E-05	543.3225356499845	119.17	0.46944	119.17	118.91	119.38	0					16	9	2	0	0	0	0.027462	1	13653	13653		23.042	0	1	173920	+		26762	32675	21899	21927	29965	29965					0.09317282384790815
KVFFKYVIN	9	Unmodified	_KVFFKYVIN_					0	0	0			REV__tr|A0A7D6ZHM8|A0A7D6ZHM8_9CLOTUPF0182proteinHZF06_00075OS=ClostridiumintestinaleOX=36845GN=HZF06_00075PE=3SV=1	REV__tr|A0A7D6ZHM8|A0A7D6ZHM8_9CLOTUPF0182proteinHZF06_00075OS=ClostridiumintestinaleOX=36845GN=HZF06_00075PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	579.33935546875	2	579.33951	1156.66447	1.4602	0.00084597	-3.4585	-0.0020037	-1.9983	-0.0011577	579.3373392530043	117.24	1.067	117.24	116.86	117.93	0					43	22	3	0	0	0	0.46377	1	13426	13426		45.952	3.0877	1	408800	+		26763	32031	21900	21928	29966	29966					0.09240069787801986
KVFFKYVIN	9	Unmodified	_KVFFKYVIN_					0	0	0			REV__tr|A0A7D6ZHM8|A0A7D6ZHM8_9CLOTUPF0182proteinHZF06_00075OS=ClostridiumintestinaleOX=36845GN=HZF06_00075PE=3SV=1	REV__tr|A0A7D6ZHM8|A0A7D6ZHM8_9CLOTUPF0182proteinHZF06_00075OS=ClostridiumintestinaleOX=36845GN=HZF06_00075PE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	579.33951	1156.66447	1.4602	0.00084597	-3.4585	-0.0020037	-1.9983	-0.0011577	579.3373392530043	117.24	1.067	117.24	116.86	117.93	0	0	0	NaN	45.952	43	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	408800	+		26764	32031	21900	21928							0.09240069787801986
KVFFMFLI	8	Unmodified	_KVFFMFLI_					0	0	0		tr|A0A7D6VNZ9|A0A7D6VNZ9_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20455PE=4SV=1	tr|A0A7D6VNZ9|A0A7D6VNZ9_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20455PE=4SV=1	tr|A0A7D6VNZ9|A0A7D6VNZ9_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20455PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.2695922851562	2	522.801174	1043.5878	0.59793	0.0003126	4.1675	0.0021788	4.7654	0.0024914	522.8036495624424	111.3	0.29561	111.16	110.98	111.27	-0.13961					8	5	2	0	0	0	0.028476	1	10482	10482		28.254	0	1	7780.3			26765	34740	21901	21929	29967	29967					0.0677455496697803
KVFGGTVHK	9	Unmodified	_KVFGGTVHK_					0	0	0		KDM4C-GMPS|1|fusion;KDM4C-GMPS|2|fusion;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS	KDM4C-GMPS|1|fusion	KDM4C-GMPS|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	486.78485107421875	2	486.784902	971.55525	-2.2106	-0.0010761	1.7885	0.0008706	-0.42209	-0.00020547	486.7855876587518	35.786	0.84615	33.077	32.85	33.696	-2.7097					31	16	2	0	0	0	0.44568	1	1482	1482		47.657	1.7054	1	81016			26766	14520	21902	21930	29968	29968					0.0683348388831746
KVFGGTVHK	9	Unmodified	_KVFGGTVHK_					0	0	0		KDM4C-GMPS|1|fusion;KDM4C-GMPS|2|fusion;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS	KDM4C-GMPS|1|fusion	KDM4C-GMPS|1|fusion	MSMS	OvCa9_classI_Rep4_	4	486.7847900390625	2	486.784902	971.55525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.436	1	32.587	32.087	33.087	-2.849								0	0	0	0.023656	1	1136	1136		98.629	27.334	1				26767	14520	21902	21930	29969	29969					0.0683348388831746
KVFGGTVHK	9	Unmodified	_KVFGGTVHK_					0	0	0		KDM4C-GMPS|1|fusion;KDM4C-GMPS|2|fusion;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS	KDM4C-GMPS|1|fusion	KDM4C-GMPS|1|fusion	MSMS	OvCa9_classI_Rep4_	4	486.7850341796875	2	486.784902	971.55525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.536	1	32.687	32.187	33.187	-2.849								0	0	0	0.022462	1	1148	1148		95.815	21.84	1				26768	14520	21902	21930	29970	29970					0.0683348388831746
KVFGGTVHK	9	Unmodified	_KVFGGTVHK_					0	0	0		KDM4C-GMPS|1|fusion;KDM4C-GMPS|2|fusion;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS	KDM4C-GMPS|1|fusion	KDM4C-GMPS|1|fusion	MSMS	OvCa9_classI_Rep4_	4	486.7849426269531	2	486.784902	971.55525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.65	1	32.801	32.301	33.301	-2.849								0	0	0	0.094478	1	1162	1162		71.877	0.58177	1				26769	14520	21902	21930	29971	29971					0.0683348388831746
KVFGGTVHKK	10	Unmodified	_KVFGGTVHKK_					0	0	0		KDM4C-GMPS|1|fusion;KDM4C-GMPS|2|fusion;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS	KDM4C-GMPS|1|fusion	KDM4C-GMPS|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	550.8329467773438	2	550.832383	1099.65021	0.7561	0.00041648	-0.8481	-0.00046716	-0.092004	-5.0679E-05	550.831810295029	31.273	0.88647	28.563	28.347	29.233	-2.7097					37	17	3	0	0	0	0.34811	1	925	925		75.043	5.4157	1	181500			26770	14520	21903	21931	29972	29972					0.10437417359503343
KVFGIGLNF	9	Unmodified	_KVFGIGLNF_					0	0	0			REV__MFSD6|p.V594Sfs*35|1|0.11|ENSG00000151690|chr2:190488804-190488805|-/A|frameshift_variant	REV__MFSD6|p.V594Sfs*35|1|0.11|ENSG00000151690|chr2:190488804-190488805|-/A|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.7597961425781	2	497.789653	993.564752	-0.72498	-0.00036089	-4.2451	-0.0021132	-4.9701	-0.0024741	497.7874105279441	79.957	0.92634	77.205	76.891	77.817	-2.7514					41	18	3	0	0	0	0.027462	1	6500	6500		30.504	11.4	1	125320	+		26771	20248	21904	21932	29973	29973					0.06771252173848552
KVFGNEIKL	9	Unmodified	_KVFGNEIKL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000494618.1_1_2:232322276-232325237:-|nuORF;ENST00000461347.5_1_2:232323706-232327997:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	OvCa99_classI_Rep5	1	524.3119506835938	2	524.313492	1046.61243	1.7207	0.00090217	0.27857	0.00014606	1.9993	0.0010482	524.313545709358	76.702	0.80586	76.702	76.405	77.211	0					40	19	3	0	0	0	0.10502	1	7712	7712		95.815	2.6197	1	2197000			26772	3058	21905	21933	29974	29974					0.09098906374038052
KVFILFLTL	9	Unmodified	_KVFILFLTL_					0	0	0		ENSG00000176928|ENST00000652361|GCNT4	ENSG00000176928|ENST00000652361|GCNT4	ENSG00000176928|ENST00000652361|GCNT4	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.7997436523438	2	547.354628	1092.6947	0.05601	3.0657E-05	-3.6204	-0.0019816	-3.5644	-0.001951	547.3532896624187	105.21	1.4862	105.21	104.74	106.23	0					57	33	3	0	0	0	0.027462	1	11810	11810		34.173	0	1	379060			26773	7641	21906	21934	29975	29975					0.15206428452961518
KVFIVMGKDL	10	Unmodified	_KVFIVMGKDL_					0	0	0		ENST00000033079.7_2_5:137321001-137323237:-|nuORF	ENST00000033079.7_2_5:137321001-137323237:-|nuORF	ENST00000033079.7_2_5:137321001-137323237:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.6341552734375	2	575.338652	1148.66275	2.0608	0.0011857	0.18093	0.0001041	2.2417	0.0012898	575.3388157803988	86.942	0.41294	86.942	86.761	87.174	0					15	9	3	0	0	0	0.026494	1	9216	9216		58.23	16.803	1	830250			26774	9628	21907	21935	29976	29976					0.0943669270754981
KVFKIYKEL	9	Unmodified	_KVFKIYKEL_					0	0	0			REV__FNBP1|p.Q503Pfs*31|1|0.07|ENSG00000187239|chr9:129900470-129900471|-/GA|frameshift_variant	REV__FNBP1|p.Q503Pfs*31|1|0.07|ENSG00000187239|chr9:129900470-129900471|-/GA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	584.356201171875	2	584.360442	1166.70633	-4.6254	-0.0027029	-2.3023	-0.0013454	-6.9277	-0.0040483	584.3589865391973	145.25	4.5766	144.28	142.9	147.48	-0.97299					233	91	4	0	0	0	0.56889	1	12219	12219		35.618	2.8678	1	156220	+		26775	28140	21908	21936	29977	29977					0.1296462547632018
KVFKPLVF	8	Unmodified	_KVFKPLVF_					0	0	0			REV__tr|A0A553SI47|A0A553SI47_NIACIPolyamineaminopropyltransferaseOS=NialliacirculansOX=1397GN=speEPE=3SV=1	REV__tr|A0A553SI47|A0A553SI47_NIACIPolyamineaminopropyltransferaseOS=NialliacirculansOX=1397GN=speEPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.2692565917969	2	489.312764	976.610974	-0.57606	-0.00028187	-4.1124	-0.0020123	-4.6885	-0.0022941	489.3104212940833	55.662	0.41352	55.662	55.559	55.973	0					13	9	2	0	0	0	0.028476	1	4606	4606		47.916	33.051	1	115980	+		26776	29862	21909	21937	29978	29978					0.12173317075939849
KVFLRLLH	8	Unmodified	_KVFLRLLH_					0	0	0			REV__nc|ENSG00000224287|P0C860|MSL3B	REV__nc|ENSG00000224287|P0C860|MSL3B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.3295288085938	2	513.334562	1024.65457	-0.17472	-8.9689E-05	3.3272	0.001708	3.1525	0.0016183	513.3363311697796	68.925	0.24431	65.435	65.262	65.507	-3.4902					6	4	2	0	0	0	0.028476	1	5120	5120		13.775	5.544	1	16633	+		26777	29137	21910	21938	29979	29979					0.14322926573095174
KVFNIKSH	8	Unmodified	_KVFNIKSH_					0	0	0		ENSG00000213793|ENST00000638862|ZNF888	ENSG00000213793|ENST00000638862|ZNF888	ENSG00000213793|ENST00000638862|ZNF888	MULTI-MSMS	OvCa9_classI_Rep2	2	486.78533935546875	2	486.784902	971.55525	-2.2106	-0.0010761	1.7885	0.0008706	-0.42209	-0.00020547	486.7855876587518	35.786	0.84615	33.077	32.85	33.696	-2.7097					31	16	2	0	0	0	0.60331	1	1476	1476		63.306	1.1989	1	81016			26778	9148	21911	21939	29980	29980					0.0683348388831746
KVFNQQKTV	9	Unmodified	_KVFNQQKTV_					0	0	0			REV__tr|A0A553SSE4|A0A553SSE4_NIACICytochromeP450OS=NialliacirculansOX=1397GN=CEQ21_02955PE=3SV=1	REV__tr|A0A553SSE4|A0A553SSE4_NIACICytochromeP450OS=NialliacirculansOX=1397GN=CEQ21_02955PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	546.3150634765625	2	546.314023	1090.61349	2.0178	0.0011023	0.41012	0.00022405	2.4279	0.0013264	546.3141687326503	83.943	0.71661	83.943	83.671	84.388	0					29	16	2	0	0	0	0.37135	1	8750	8750		54.776	1.4249	1	1270800	+		26779	30830	21912	21940	29981	29981					0.07181120742939129
KVFNQQKTV	9	Unmodified	_KVFNQQKTV_					0	0	0			REV__tr|A0A553SSE4|A0A553SSE4_NIACICytochromeP450OS=NialliacirculansOX=1397GN=CEQ21_02955PE=3SV=1	REV__tr|A0A553SSE4|A0A553SSE4_NIACICytochromeP450OS=NialliacirculansOX=1397GN=CEQ21_02955PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	546.314023	1090.61349	-1.7461	-0.0009539	1.0808	0.00059047	-0.66525	-0.00036344	546.3143994622561	85.13	0.98717	83.584	83.153	84.14	-1.5462	-0.17892	0.000748	NaN	54.776	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46187	+		26780	30830	21912	21940							0.07181120742939129
KVFNQQKTV	9	Unmodified	_KVFNQQKTV_					0	0	0			REV__tr|A0A553SSE4|A0A553SSE4_NIACICytochromeP450OS=NialliacirculansOX=1397GN=CEQ21_02955PE=3SV=1	REV__tr|A0A553SSE4|A0A553SSE4_NIACICytochromeP450OS=NialliacirculansOX=1397GN=CEQ21_02955PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	546.314023	1090.61349	-1.4389	-0.00078611	2.1075	0.0011513	0.66854	0.00036523	546.3156096020172	85.992	0.75114	83.772	83.636	84.387	-2.2204	0.009093	0.0018697	NaN	54.776	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93399	+		26781	30830	21912	21940							0.07181120742939129
KVFNQQKTV	9	Unmodified	_KVFNQQKTV_					0	0	0			REV__tr|A0A553SSE4|A0A553SSE4_NIACICytochromeP450OS=NialliacirculansOX=1397GN=CEQ21_02955PE=3SV=1	REV__tr|A0A553SSE4|A0A553SSE4_NIACICytochromeP450OS=NialliacirculansOX=1397GN=CEQ21_02955PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	546.314023	1090.61349	0.86842	0.00047443	-1.8524	-0.001012	-0.98394	-0.00053754	546.31257106474	86.379	0.68809	83.752	83.562	84.25	-2.6269	-0.010349	-0.0024569	NaN	54.776	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83536	+		26782	30830	21912	21940							0.07181120742939129
KVFPFALLP	9	Unmodified	_KVFPFALLP_					0	0	0			REV__ENST00000524307.5_1_8:124089445-124141439:+|nuORF	REV__ENST00000524307.5_1_8:124089445-124141439:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.3035888671875	2	516.318046	1030.62154	2.1309	0.0011002	0.26508	0.00013686	2.396	0.0012371	516.821790411384	125.28	0.98557	124.22	123.9	124.88	-1.0519					39	18	3	0	0	0	0.027462	1	9722	9722		12.207	5.8942	1	47573	+		26783	20494	21913	21941	29982	29982					0.10745299730365332
KVFPMNMKR	9	Unmodified	_KVFPMNMKR_					0	0	0			REV__ENSG00000164500|ENST00000297001|SPATA48	REV__ENSG00000164500|ENST00000297001|SPATA48	MULTI-MSMS	OvCa99_classI_Rep5	1	575.8142700195312	2	575.814822	1149.61509	2.903	0.0016716	-2.8764	-0.0016563	0.026578	1.5304E-05	575.813067443262	88.039	1.5425	88.039	87.42	88.962	0					79	36	4	0	0	0	0.50149	1	9350	9350		42.396	0.96952	1	1580500	+		26784	20993	21914	21942	29983	29983					0.04626715235690426
KVFQEPLFY	9	Unmodified	_KVFQEPLFY_					0	0	0		CTSL|p.S117Lfs*10|1|0.42|ENSG00000135047|chr9:87728350-87728350|C/-|frameshift_variant;nc|ENSG00000135047|P07711-3|CTSL;ENSG00000135047|ENST00000343150|CTSL	CTSL|p.S117Lfs*10|1|0.42|ENSG00000135047|chr9:87728350-87728350|C/-|frameshift_variant	CTSL|p.S117Lfs*10|1|0.42|ENSG00000135047|chr9:87728350-87728350|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	585.8130493164062	2	585.813325	1169.6121	-0.10687	-6.2607E-05	-0.051478	-3.0157E-05	-0.15835	-9.2764E-05	585.8131917334592	109.95	1.4347	109.78	109.46	110.9	-0.17237					68	28	3	0	0	0	0.035142	6	10344	10325;10329;10336;10344;10350;10357		131.03	33.649	1	344850			26785	696	21915	21943	29984;29985;29986;29987;29988;29989	29987					0.03407486654191416
KVFQEPLFY	9	Unmodified	_KVFQEPLFY_					0	0	0		CTSL|p.S117Lfs*10|1|0.42|ENSG00000135047|chr9:87728350-87728350|C/-|frameshift_variant;nc|ENSG00000135047|P07711-3|CTSL;ENSG00000135047|ENST00000343150|CTSL	CTSL|p.S117Lfs*10|1|0.42|ENSG00000135047|chr9:87728350-87728350|C/-|frameshift_variant	CTSL|p.S117Lfs*10|1|0.42|ENSG00000135047|chr9:87728350-87728350|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	585.8114624023438	2	585.813325	1169.6121	-0.38659	-0.00022647	0.053807	3.1521E-05	-0.33278	-0.00019495	585.8132566944333	111.03	1.6892	109.93	109.6	111.29	-1.1038					73	33	3	0	0	0	0.049969	6	8041	8035;8041;8046;8053;8059;8065		118.74	29.837	1	406130			26786	696	21915	21943	29990;29991;29992;29993;29994;29995	29991					0.03407486654191416
KVFQEPLFY	9	Unmodified	_KVFQEPLFY_					0	0	0		CTSL|p.S117Lfs*10|1|0.42|ENSG00000135047|chr9:87728350-87728350|C/-|frameshift_variant;nc|ENSG00000135047|P07711-3|CTSL;ENSG00000135047|ENST00000343150|CTSL	CTSL|p.S117Lfs*10|1|0.42|ENSG00000135047|chr9:87728350-87728350|C/-|frameshift_variant	CTSL|p.S117Lfs*10|1|0.42|ENSG00000135047|chr9:87728350-87728350|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	585.8126831054688	2	585.813325	1169.6121	-0.067962	-3.9813E-05	-0.13073	-7.6586E-05	-0.1987	-0.0001164	585.8131526661441	111.51	1.5109	110	109.68	111.2	-1.5111					66	28	3	0	0	0	0.064985	3	10283	10271;10283;10293		110.12	29.154	1	417560			26787	696	21915	21943	29996;29997;29998	29997					0.03407486654191416
KVFRRQLL	8	Unmodified	_KVFRRQLL_					0	0	0			REV__nc|ENSG00000130055|Q9HCC8-2|GDPD2	REV__nc|ENSG00000130055|Q9HCC8-2|GDPD2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.7899780273438	2	530.342918	1058.67128	-1.2499	-0.0006629	0.39238	0.00020809	-0.85757	-0.00045481	530.3430734112909	76.87	1.2465	73.931	73.504	74.751	-2.9389					54	25	3	0	0	0	0.028476	1	6173	6173		19.36	0	1	123060	+		26788	18920	21916	21944	29999	29999					0.14429427459026556
KVFSLMTVI	9	Unmodified	_KVFSLMTVI_					0	0	0			REV__tr|A0A553SRB9|A0A553SRB9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00780PE=4SV=1	REV__tr|A0A553SRB9|A0A553SRB9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00780PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.8308715820312	2	519.306821	1036.59909	-0.14065	-7.304E-05	3.5949	0.0018668	3.4542	0.0017938	519.3086812367785	63.049	0.87413	63.049	62.581	63.455	0					38	21	3	0	0	0	0.027462	1	5580	5580		21.96	0	1	1798500	+		26789	30717	21917	21945	30000	30000					0.08225332270444596
KVFSNINII	9	Unmodified	_KVFSNINII_					0	0	0		ENSG00000132623|ENST00000378392|ANKEF1	ENSG00000132623|ENST00000378392|ANKEF1	ENSG00000132623|ENST00000378392|ANKEF1	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.3048706054688	2	524.313492	1046.61243	0.52356	0.00027451	-0.47875	-0.00025101	0.044816	2.3497E-05	524.3132838440899	128.38	1.341	127.28	126.62	127.96	-1.0933					46	26	3	0	0	0	0.027462	1	10021	10021		14.865	0	1	44502			26790	4154	21918	21946	30001	30001					0.09098906374038052
KVFVGRFKSR	10	Unmodified	_KVFVGRFKSR_					0	0	0		ENSG00000070756|ENST00000318607|PABPC1;nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4	ENSG00000070756|ENST00000318607|PABPC1;nc|ENSG00000090621|Q13310-2|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	MULTI-SECPEP	OvCa9_classI_Rep2	2	409.5752868652344	3	408.583897	1222.72986	1.2209	0.00049885	-0.92081	-0.00037623	0.30012	0.00012262	408.58329634529844	44.748	1.194	42.038	41.603	42.797	-2.7097					59	23	4	0	0	0	0.026891	1	2653	2653		23.378	6.8481	1	65937			26791	1844;1433	21919	21947	30002	30002					0.12740484033497523
KVFVGRFKSR	10	Unmodified	_KVFVGRFKSR_					0	0	0		ENSG00000070756|ENST00000318607|PABPC1;nc|ENSG00000070756|P11940-2|PABPC1;nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4	ENSG00000070756|ENST00000318607|PABPC1;nc|ENSG00000090621|Q13310-2|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	408.583897	1222.72986	0.0035058	1.4324E-06	-0.014297	-5.8414E-06	-0.010791	-4.409E-06	408.58382941150603	44.889	1.296	41.85	41.613	42.909	-3.0385	-0.093712	0.00054973	NaN	12.957	54	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61557			26792	1844;1433	21919	21947							0.12740484033497523
KVFVKWDN	8	Unmodified	_KVFVKWDN_					0	0	0			REV__tr|A0A7D6VTS6|A0A7D6VTS6_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_18070PE=3SV=1	REV__tr|A0A7D6VTS6|A0A7D6VTS6_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_18070PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.2886962890625	2	518.284734	1034.55492	1.4923	0.00077343	0.52425	0.00027171	2.0165	0.0010451	518.2847289052374	77.732	0.92193	77.732	77.252	78.174	0					83	21	5	0	0	0	0.028476	1	7799	7799		23.042	0	1	9733300	+		26793	31627	21920	21948	30003	30003					0.03902064168460129
KVFVLLMY	8	Unmodified	_KVFVLLMY_					0	0	0			REV__ENSG00000178789|ENST00000392621|CD300LB	REV__ENSG00000178789|ENST00000392621|CD300LB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.82098388671875	2	506.798632	1011.58271	0.06621	3.3555E-05	2.9165	0.0014781	2.9827	0.0015116	506.80000289311675	111.83	0.68492	110.32	109.95	110.63	-1.5111					20	12	2	0	0	0	0.028476	1	10308	10308		20.482	0	1	26905	+		26794	22080	21921	21949	30004	30004					0.07738251104353822
KVFYFSFTY	9	Unmodified	_KVFYFSFTY_					0	0	0		L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|282|2|anti-sense;L1PA3_dup1152|chr2:117623254-117629278:+|1.1606400945596698|0.0841542146032081|3.79|394.0|284|2|anti-sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.448906025747238|0.1317034148076854|3.46|417.0|338|3|anti-sense;L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|335|3|anti-sense;chr8:91197524-91200613|99|17.84|0.22|6.31|+|2|TE_info:L1PA3,L1PA3_dup5484,L1,LINE,donor,-,91191845,91197524|None,LRRC69|84;chr6:109250991-109254448|247|18.56|0.13|7.16|+|2|TE_info:L1PA2,L1PA2_dup2028,L1,LINE,donor,-,109245219,109250991|None,CCDC162P|63;chr3:195070111-195087933|297|11.33|0.27|5.37|-|0|TE_info:L1PA2,L1PA2_dup1050,L1,LINE,donor,+,195087933,195093677|XXYLT1,None|105;chr15:53523322-53540662|224|18.24|0.17|6.76|-|2|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|61	L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|282|2|anti-sense	L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|282|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.85650634765625	3	401.202459	1200.58555	0.96046	0.00038534	-4.2684	-0.0017125	-3.308	-0.0013272	401.2004868263127	40.422	0.46523	40.422	40.2	40.666	0					24	9	3	0	0	0	0.027462	1	2437	2437		37.812	1.3648	1	256150			26795	359	21922	21950	30005	30005					-0.006722022371377534
KVGAGWAGR	9	Unmodified	_KVGAGWAGR_					0	0	0		ENST00000536092.1_12:7243942-7244984:-|nuORF	ENST00000536092.1_12:7243942-7244984:-|nuORF	ENST00000536092.1_12:7243942-7244984:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.7817687988281	2	451.253769	900.492984	0.56018	0.00025278	-2.7687	-0.0012494	-2.2086	-0.00099662	451.2548835568139	58.127	0.75588	58.127	57.732	58.488	0					25	17	3	0	0	0	0.027462	1	4866	4866		29.15	0	1	343470			26796	13387	21923	21951	30006	30006					0.03875757540004088
KVGAVPPAK	9	Unmodified	_KVGAVPPAK_					0	0	0		ENST00000482878.5_1_16:772680-772797:-|nuORF;ENST00000481804.5_1_16:772680-773505:-|nuORF;ENST00000485091.5_1_16:772680-775160:-|nuORF;ENSG00000162004|ENST00000345165|CCDC78	ENST00000482878.5_1_16:772680-772797:-|nuORF	ENST00000482878.5_1_16:772680-772797:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	434.2875671386719	2	433.776545	865.538538	-0.56784	-0.00024631	0.55603	0.00024119	-0.011807	-5.1218E-06	433.7766428646741	83.682	1.6397	81.421	80.967	82.607	-2.261					84	34	4	0	0	0	0.027462	1	4948	4948		21.96	3.6355	1	911500			26797	6150	21924	21952	30007	30007					0.10038983002368695
KVGEEQFTSSF	11	Unmodified	_KVGEEQFTSSF_					0	0	0		ENST00000369800.5_1_5:172114442-172114610:+|nuORF	ENST00000369800.5_1_5:172114442-172114610:+|nuORF	ENST00000369800.5_1_5:172114442-172114610:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	630.048583984375	2	629.801143	1257.58773	-0.54386	-0.00034252	-4.4105	-0.0027777	-4.9544	-0.0031203	629.797680490963	44.357	0.35929	44.357	44.169	44.528	0					16	7	4	0	0	0	0.025818	1	2972	2972		36.318	24.111	1	157240			26798	10904	21925	21953	30008	30008					-0.030758182899944586
KVGENLTLI	9	Unmodified	_KVGENLTLI_					0	0	0			REV__nc|ENSG00000119383|Q15257-4|PTPA	REV__nc|ENSG00000119383|Q15257-4|PTPA	MULTI-MSMS	OvCa99_classI_Rep5	1	493.79962158203125	2	493.797675	985.580796	-0.73808	-0.00036446	0.42036	0.00020757	-0.31772	-0.00015689	493.7976360204997	49.369	0.82697	49.369	48.986	49.813	0					44	18	4	0	0	0	0.44568	1	3704	3704		47.657	0	1	1733900	+		26799	18438	21926	21954	30009	30009					0.08742913620108084
KVGIYKLT	8	Unmodified	_KVGIYKLT_					0	0	0		MYH13|p.Q1539Hfs*44|1|0.11|ENSG00000006788|chr17:10311142-10311143|-/G|frameshift_variant;ENSG00000006788|ENST00000252172|MYH13;MYH13|p.I840Sfs*5|1|0.23|ENSG00000006788|chr17:10328039-10328039|T/-|frameshift_variant;MYH13|p.E538Gfs*66|1|0.09|ENSG00000006788|chr17:10344081-10344081|T/-|frameshift_variant;MYH13|p.N751Lfs*37|1|0.1|ENSG00000006788|chr17:10332146-10332147|-/GAAGTATGTGCAG|frameshift_variant	MYH13|p.Q1539Hfs*44|1|0.11|ENSG00000006788|chr17:10311142-10311143|-/G|frameshift_variant	MYH13|p.Q1539Hfs*44|1|0.11|ENSG00000006788|chr17:10311142-10311143|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.28851318359375	2	461.292028	920.569503	0.51392	0.00023707	-2.2183	-0.0010233	-1.7044	-0.00078621	461.29079428145974	86.705	0.44069	84.078	83.908	84.349	-2.6269					13	8	2	0	0	0	0.028476	1	7326	7326		23.042	1.0826	1	21207			26800	14848	21927	21955	30010	30010					0.10604136316601398
KVGKVLKALE	10	Unmodified	_KVGKVLKALE_					0	0	0			REV__tr|A0A553SP49|A0A553SP49_NIACIProbabledual-specificityRNAmethyltransferaseRlmNOS=NialliacirculansOX=1397GN=rlmNPE=3SV=1	REV__tr|A0A553SP49|A0A553SP49_NIACIProbabledual-specificityRNAmethyltransferaseRlmNOS=NialliacirculansOX=1397GN=rlmNPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.8668823242188	2	542.858067	1083.70158	-0.41941	-0.00022768	-1.1238	-0.00061007	-1.5432	-0.00083775	543.3590539018135	39.154	0.22445	39.154	39.017	39.242	0					7	4	2	0	0	0	0.027174	1	2276	2276		20.947	0	1	38630	+		26801	30491	21928	21956	30011	30011					0.1630774133354862
KVGLLTTPT	9	Unmodified	_KVGLLTTPT_					0	0	0		ENST00000505555.5_1_5:218470-251793:+|nuORF	ENST00000505555.5_1_5:218470-251793:+|nuORF	ENST00000505555.5_1_5:218470-251793:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.2865905761719	2	465.286943	928.559333	1.4861	0.00069147	-4.2923	-0.0019971	-2.8062	-0.0013057	465.28490580371215	138.56	1.1696	137.03	136.79	137.96	-1.5284					44	23	3	0	0	0	0.6653	1	13485	13485		24.203	0	1	68502			26802	12896	21929	21957	30012	30012					0.09219528591347625
KVGNIYERIT	10	Unmodified	_KVGNIYERIT_					0	0	0			REV__tr|A0A7D7A027|A0A7D7A027_9CLOTHDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22400PE=4SV=1	REV__tr|A0A7D7A027|A0A7D7A027_9CLOTHDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22400PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	597.804931640625	2	596.837862	1191.66117	1.8552	0.0011072	3.5987	0.0021478	5.4539	0.0032551	596.8397350137659	82.927	0.59591	82.927	82.781	83.377	0					22	13	3	0	0	0	0.026653	1	8604	8604		33.922	10.399	1	361370	+		26803	32433	21930	21958	30013	30013					0.073007749431099
KVGPGRVL	8	Unmodified	_KVGPGRVL_					0	0	0		ENSG00000166169|ENST00000370162|POLL;nc|ENSG00000166169|Q9UGP5-2|POLL;ENST00000463515.1_1_10:103339212-103340251:-|nuORF	ENSG00000166169|ENST00000370162|POLL	ENSG00000166169|ENST00000370162|POLL	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.2350158691406	2	413.268887	824.523222	0.06419	2.6528E-05	0.42051	0.00017379	0.4847	0.00020031	413.2690472050378	43.584	0.59452	43.584	43.185	43.78	0					20	13	2	0	0	0	0.028476	1	2902	2902		38.806	18.324	1	53513			26804	6646	21931	21959	30014	30014					0.1039411620519104
KVGPLHTPTL	10	Unmodified	_KVGPLHTPTL_					0	0	0			REV__nc|ENSG00000186090|Q70Z44-3|HTR3D	REV__nc|ENSG00000186090|Q70Z44-3|HTR3D	MULTI-MSMS	OvCa9_classI_Rep2	2	531.81640625	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.78463	1	13810	13810		20.947	1.8434	1	166960	+		26805	22553	21932	21960	30015	30015					0.09498308748334239
KVGPTSAPPQ	10	Unmodified	_KVGPTSAPPQ_					0	0	0			REV__ENST00000482870.6_1_19:42071403-42092879:+|nuORF	REV__ENST00000482870.6_1_19:42071403-42092879:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	491.8039855957031	2	491.271824	980.529095	-0.7143	-0.00035092	0.46136	0.00022665	-0.25294	-0.00012426	491.2717037176632	98.033	0.76447	96.273	95.962	96.726	-1.7595					20	14	2	0	0	0	0.026522	1	6536	6536		65.465	0	1	48559	+		26806	26512	21933	21961	30016	30016					0.038051699261814065
KVGPTSAPPQ	10	Unmodified	_KVGPTSAPPQ_					0	0	0			REV__ENST00000482870.6_1_19:42071403-42092879:+|nuORF	REV__ENST00000482870.6_1_19:42071403-42092879:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	491.271824	980.529095	0.65001	0.00031933	-0.092578	-4.5481E-05	0.55743	0.00027385	491.2710477853308	97.226	0.69133	96.268	95.97	96.661	-0.95857	-0.002723	-0.00028832	NaN	53.089	22	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40617	+		26807	26512	21933	21961							0.038051699261814065
KVGRRIANL	9	Unmodified	_KVGRRIANL_					0	0	0			REV__ENST00000520771.1_1_8:125565235-125568613:-|nuORF	REV__ENST00000520771.1_1_8:125565235-125568613:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.8351440429688	2	513.830175	1025.6458	0.27009	0.00013878	0.81061	0.00041651	1.0807	0.00055529	513.8307344479023	90.158	0.90681	87.583	87.1	88.007	-2.575					23	17	2	0	0	0	0.027448	1	7772	7772		53.351	39.214	1	76982	+		26808	21571	21934	21962	30017	30017					0.1339995293658376
KVGTVENS	8	Unmodified	_KVGTVENS_					0	0	0		ENST00000320474.8_1_3:160803439-160803586:-|nuORF	ENST00000320474.8_1_3:160803439-160803586:-|nuORF	ENST00000320474.8_1_3:160803439-160803586:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	417.2233581542969	2	417.2218	832.429047	-0.16608	-6.9294E-05	1.6701	0.00069679	1.504	0.00062749	417.222334431684	39.816	0.74695	39.816	39.547	40.294	0					37	16	3	0	0	0	0.65062	1	2359	2359		53.351	3.3269	1	1093000			26809	10365	21935	21963	30018	30018					0.0061293259238937026
KVGYCTYFAS	10	Unmodified	_KVGYCTYFAS_					0	0	0		tr|A0A7D6ZYR3|A0A7D6ZYR3_9CLOTTransglutaminasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17350PE=4SV=1	tr|A0A7D6ZYR3|A0A7D6ZYR3_9CLOTTransglutaminasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17350PE=4SV=1	tr|A0A7D6ZYR3|A0A7D6ZYR3_9CLOTTransglutaminasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17350PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.8260498046875	2	569.765517	1137.51648	-0.22405	-0.00012765	-4.3697	-0.0024897	-4.5937	-0.0026173	569.7630532211707	29.993	0.25173	29.993	29.835	30.086	0					8	4	2	0	0	0	0.02663	1	1115	1115		28.081	8.0847	1	27691			26810	35926	21936	21964	30019	30019					-0.04677609528357607
KVHDIELAI	9	Unmodified	_KVHDIELAI_					0	0	0		tr|A0A7D6ZYP2|A0A7D6ZYP2_9CLOTN5-carboxyaminoimidazoleribonucleotidesynthaseOS=ClostridiumintestinaleOX=36845GN=purKPE=3SV=1	tr|A0A7D6ZYP2|A0A7D6ZYP2_9CLOTN5-carboxyaminoimidazoleribonucleotidesynthaseOS=ClostridiumintestinaleOX=36845GN=purKPE=3SV=1	tr|A0A7D6ZYP2|A0A7D6ZYP2_9CLOTN5-carboxyaminoimidazoleribonucleotidesynthaseOS=ClostridiumintestinaleOX=36845GN=purKPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.32568359375	2	519.303124	1036.5917	0.92471	0.0004802	-1.4877	-0.00077257	-0.56301	-0.00029237	519.3024666189027	112.85	0.64025	112.73	112.38	113.02	-0.12174					16	12	2	0	0	0	0.02741	1	10708	10708		71.296	7.9894	1	9439.5			26811	35924	21937	21965	30020	30020					0.07486315994356119
KVHDIELAI	9	Unmodified	_KVHDIELAI_					0	0	0		tr|A0A7D6ZYP2|A0A7D6ZYP2_9CLOTN5-carboxyaminoimidazoleribonucleotidesynthaseOS=ClostridiumintestinaleOX=36845GN=purKPE=3SV=1	tr|A0A7D6ZYP2|A0A7D6ZYP2_9CLOTN5-carboxyaminoimidazoleribonucleotidesynthaseOS=ClostridiumintestinaleOX=36845GN=purKPE=3SV=1	tr|A0A7D6ZYP2|A0A7D6ZYP2_9CLOTN5-carboxyaminoimidazoleribonucleotidesynthaseOS=ClostridiumintestinaleOX=36845GN=purKPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	519.303124	1036.5917	1.0682	0.00055471	-2.4698	-0.0012826	-1.4017	-0.00072788	519.3016291693773	113.69	0.4174	112.61	112.4	112.82	-1.0753	-0.060746	-0.00038606	NaN	71.296	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15670			26812	35924	21937	21965							0.07486315994356119
KVHGCPVIDF	10	Unmodified	_KVHGCPVIDF_					0	0	0			REV__ENST00000460444.5_1_3:11340169-11346011:+|nuORF	REV__ENST00000460444.5_1_3:11340169-11346011:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.8031616210938	2	557.789327	1113.5641	-0.29916	-0.00016687	1.3541	0.00075528	1.0549	0.00058841	557.7890872387111	33.806	0.53032	33.806	33.583	34.113	0					16	10	3	0	0	0	0.02658	1	1558	1558		45.972	1.4412	1	45230	+		26813	26082	21938	21966	30021	30021					0.01186089462498785
KVHHKTYED	9	Unmodified	_KVHHKTYED_					0	0	0		ENSG00000175110|ENST00000680020|MRPS22;ENST00000498505.5_1_3:139068252-139075853:+|nuORF	ENSG00000175110|ENST00000680020|MRPS22	ENSG00000175110|ENST00000680020|MRPS22	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.8133544921875	2	578.790912	1155.56727	1.143	0.00066155	-2.1521	-0.0012456	-1.0092	-0.00058409	578.7895762806769	133.1	1.1631	133.1	132.8	133.96	0					31	24	2	0	0	0	0.027459	1	15561	15561		52.937	0	1	195240			26814	7517	21939	21967	30022	30022					-0.004289441591481591
KVHIKRPTT	9	Unmodified	_KVHIKRPTT_					0	0	0		ENSG00000140557|ENST00000268164|ST8SIA2	ENSG00000140557|ENST00000268164|ST8SIA2	ENSG00000140557|ENST00000268164|ST8SIA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2911987304688	2	540.337833	1078.66111	-0.15799	-8.5367E-05	0.57729	0.00031193	0.4193	0.00022656	540.3379550526838	47.24	0.34597	47.24	47.076	47.422	0					10	6	2	0	0	0	0.027462	1	3412	3412		26.693	6.2111	1	111450			26815	4860	21940	21968	30023	30023					0.1249281973377947
KVHKKPFIAIN	11	Unmodified	_KVHKKPFIAIN_					0	0	0			REV__ENST00000503937.5_1_4:83740135-83740261:-|nuORF	REV__ENST00000503937.5_1_4:83740135-83740261:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	432.961669921875	3	432.271319	1293.79213	-1.055	-0.00045606	-2.6214	-0.0011332	-3.6765	-0.0015892	432.2702509850698	60.644	0.42283	57.873	57.606	58.029	-2.7702					16	7	3	0	0	0	0.026145	1	4447	4447		12.957	0	1	15934	+		26816	26852	21941	21969	30024	30024					0.15698210381879107
KVHLLRQV	8	Unmodified	_KVHLLRQV_					0	0	0			REV__ENSG00000127831|ENST00000248444|VIL1	REV__ENSG00000127831|ENST00000248444|VIL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.7882080078125	2	496.821818	991.629084	-0.60922	-0.00030267	0.77076	0.00038293	0.16153	8.0253E-05	496.8219665092192	69.295	0.29654	65.814	65.614	65.91	-3.4812					6	5	2	0	0	0	0.028476	1	5177	5177		16.473	3.514	1	6921.9	+		26817	18827	21942	21970	30025	30025					0.13293452050652377
KVHPAVVI	8	Unmodified	_KVHPAVVI_					0	0	0		ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	MULTI-MSMS	OvCa99_classI_Rep5	1	431.78045654296875	2	431.779088	861.543623	-0.11107	-4.7958E-05	0.3321	0.00014339	0.22103	9.5434E-05	431.7790820335642	54.313	0.97472	54.313	54.048	55.023	0					43	22	3	0	0	0	0.25884	1	4376	4376		114.6	45.503	1	1787100			26818	3723	21943	21971	30026	30026					0.10731286864995582
KVHPRHNI	8	Unmodified	_KVHPRHNI_					0	0	0			REV__ENSG00000166211|ENST00000551346|SPIC	REV__ENSG00000166211|ENST00000551346|SPIC	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.310302734375	2	500.793592	999.572632	-0.39778	-0.00019921	-0.52165	-0.00026124	-0.91944	-0.00046045	500.79309148826616	47.746	0.25863	47.746	47.595	47.854	0					8	5	2	0	0	0	0.028476	1	3464	3464		33.516	0	1	270080	+		26819	21167	21944	21972	30027	30027					0.07282824213973527
KVHRAGVV	8	Unmodified	_KVHRAGVV_					0	0	0			REV__ENSG00000139531|ENST00000266971|SUOX	REV__ENSG00000139531|ENST00000266971|SUOX	MULTI-SECPEP	OvCa99_classI_Rep5	1	434.252197265625	2	433.271961	864.52937	0.99631	0.00043167	-1.4141	-0.00061268	-0.41778	-0.00018101	433.2712940636543	63.373	0.23611	63.373	63.219	63.455	0					7	5	2	0	0	0	0.028476	1	5710	5710		13.775	0.81615	1	143490	+		26820	19615	21945	21973	30028	30028					0.09168634436707634
KVHRGKGS	8	Unmodified	_KVHRGKGS_					0	0	0			REV__tr|A0A553SR12|A0A553SR12_NIACICatalaseOS=NialliacirculansOX=1397GN=CEQ21_00175PE=3SV=1	REV__tr|A0A553SR12|A0A553SR12_NIACICatalaseOS=NialliacirculansOX=1397GN=CEQ21_00175PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	434.7594299316406	2	434.759218	867.503883	-0.8615	-0.00037455	1.0242	0.00044527	0.16266	7.0719E-05	434.75957544629813	33.558	0.84127	30.848	30.672	31.513	-2.7097					25	16	2	0	0	0	0.74754	1	1213	1213		27.882	1.0861	1	74042	+		26821	30679	21946	21974	30029	30029					0.06483159914296266
KVHRGKGS	8	Unmodified	_KVHRGKGS_					0	0	0			REV__tr|A0A553SR12|A0A553SR12_NIACICatalaseOS=NialliacirculansOX=1397GN=CEQ21_00175PE=3SV=1	REV__tr|A0A553SR12|A0A553SR12_NIACICatalaseOS=NialliacirculansOX=1397GN=CEQ21_00175PE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	434.759218	867.503883	0.63817	0.00027745	-1.2267	-0.00053332	-0.58853	-0.00025587	434.758482712506	31.026	0.2905	31.026	30.881	31.171	0	0.088776	-0.0018445	NaN	27.882	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7308.1	+		26822	30679	21946	21974							0.06483159914296266
KVHRGKGS	8	Unmodified	_KVHRGKGS_					0	0	0			REV__tr|A0A553SR12|A0A553SR12_NIACICatalaseOS=NialliacirculansOX=1397GN=CEQ21_00175PE=3SV=1	REV__tr|A0A553SR12|A0A553SR12_NIACICatalaseOS=NialliacirculansOX=1397GN=CEQ21_00175PE=3SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	434.759218	867.503883	-0.8615	-0.00037455	1.0242	0.00044527	0.16266	7.0719E-05	434.75957544629813	33.558	0.84127	30.848	30.672	31.513	-2.7097	-0.088776	0.0001127	NaN	27.882	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74042	+		26823	30679	21946	21974							0.06483159914296266
KVHRKNPLRA	10	Unmodified	_KVHRKNPLRA_					0	0	0		ENST00000506793.5_1_4:44680541-44700695:+|nuORF;ENSG00000151806|ENST00000281543|GUF1	ENST00000506793.5_1_4:44680541-44700695:+|nuORF	ENST00000506793.5_1_4:44680541-44700695:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	406.923828125	3	406.922912	1217.74691	1.0879	0.00044271	-0.70037	-0.000285	0.38757	0.00015771	406.92256656608504	20.522	0.91062	19.184	18.954	19.864	-1.3386					42	18	3	0	0	0	0.79186	1	66	66		20.03	1.4994	1	67717			26824	5585	21947	21975	30030	30030					0.14674404639322347
KVHTGRLHPR	10	Unmodified	_KVHTGRLHPR_					0	0	0		ENST00000420509.1_1_2:206951001-206951199:+|nuORF	ENST00000420509.1_1_2:206951001-206951199:+|nuORF	ENST00000420509.1_1_2:206951001-206951199:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	400.2206115722656	3	400.907262	1199.69996	3.0381	0.001218	-3.4573	-0.0013861	-0.41921	-0.00016806	400.90582537246286	35.801	0.89914	32.952	32.64	33.539	-2.849					42	17	3	0	0	0	0.027062	1	1179	1179		22.562	5.8442	1	112350			26825	11671	21948	21976	30031	30031					0.10809545088159211
KVHTGRLHPR	10	Unmodified	_KVHTGRLHPR_					0	0	0		ENST00000420509.1_1_2:206951001-206951199:+|nuORF	ENST00000420509.1_1_2:206951001-206951199:+|nuORF	ENST00000420509.1_1_2:206951001-206951199:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	400.907262	1199.69996	-0.82869	-0.00033223	0.12306	4.9336E-05	-0.70563	-0.00028289	400.9073101150326	36.054	0.89342	33.344	32.95	33.844	-2.7097	0.19622	0.0028367	NaN	27.644	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35826			26826	11671	21948	21976							0.10809545088159211
KVHTHYSL	8	Unmodified	_KVHTHYSL_					0	0	0			REV__ENSG00000197410|ENST00000357232|DCHS2	REV__ENSG00000197410|ENST00000357232|DCHS2	MULTI-MSMS	OvCa99_classI_Rep5	1	492.7710876464844	2	492.766709	983.518865	2.2013	0.0010847	3.9037	0.0019236	6.105	0.0030083	492.7683320279566	76.136	0.49145	76.136	75.913	76.405	0					30	11	3	0	0	0	0.7224	1	7604	7604		38.806	3.1879	1	1491100	+		26827	22920	21949	21977	30032	30032					0.026446069916119086
KVHTHYSL	8	Unmodified	_KVHTHYSL_					0	0	0			REV__ENSG00000197410|ENST00000357232|DCHS2	REV__ENSG00000197410|ENST00000357232|DCHS2	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	492.766709	983.518865	2.2013	0.0010847	3.9037	0.0019236	6.105	0.0030083	492.7683320279566	76.136	0.49145	76.136	75.913	76.405	0	0	0	NaN	38.806	30	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1491100	+		26828	22920	21949	21977							0.026446069916119086
KVHVGLGSFV	10	Unmodified	_KVHVGLGSFV_					0	0	0			REV__nc|ENSG00000100578|Q9BVV6-3|KIAA0586	REV__nc|ENSG00000100578|Q9BVV6-3|KIAA0586	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.3386840820312	2	521.805834	1041.59712	-0.99625	-0.00051985	-1.8694	-0.00097547	-2.8657	-0.0014953	521.8042150757349	35.222	0.51717	35.222	34.957	35.475	0					17	10	3	0	0	0	0.026752	1	1766	1766		35.618	0	1	49578	+		26829	28768	21950	21978	30033	30033					0.0779803957684635
KVHVLPLLQ	9	Unmodified	_KVHVLPLLQ_					0	0	0		nc|ENSG00000172262|P52739-2|ZNF131;ENSG00000172262|ENST00000682664|ZNF131	nc|ENSG00000172262|P52739-2|ZNF131	nc|ENSG00000172262|P52739-2|ZNF131	MULTI-SECPEP	OvCa9_classI_Rep3	3	524.7942504882812	2	523.839677	1045.6648	-1.2619	-0.00066101	0.81439	0.00042661	-0.44747	-0.0002344	523.8400764204692	91.622	1.0598	89.598	89.029	90.089	-2.0241					42	20	3	0	0	0	0.027462	1	5750	5750		29.15	0	1	47743			26830	7285	21951	21979	30034	30034					0.14379489507678045
KVIAFALALL	10	Unmodified	_KVIAFALALL_					0	0	0		tr|A0A553SH58|A0A553SH58_NIACIYbbR-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12195PE=4SV=1	tr|A0A553SH58|A0A553SH58_NIACIYbbR-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12195PE=4SV=1	tr|A0A553SH58|A0A553SH58_NIACIYbbR-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12195PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.3346557617188	2	529.852253	1057.68995	-0.56524	-0.00029949	0.35866	0.00019004	-0.20658	-0.00010946	530.3542705752365	97.673	1.0537	95.914	95.26	96.314	-1.7595					26	20	2	0	0	0	0.027021	1	6440	6440		29.15	0	1	31041			26831	33240	21952	21980	30035	30035					0.16341544310193967
KVIDDLNIL	9	Unmodified	_KVIDDLNIL_					0	0	0			REV__tr|A0A553SRP3|A0A553SRP3_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_01510PE=4SV=1	REV__tr|A0A553SRP3|A0A553SRP3_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_01510PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.8138427734375	2	521.810782	1041.60701	-0.59233	-0.00030908	4.4862	0.0023409	3.8938	0.0020318	521.8131591315095	68.904	2.2928	65.414	65.113	67.406	-3.4902					139	46	6	0	0	0	0.68424	1	5150	5150		21.96	1.4781	1	4748000	+		26832	30753	21953	21981	30036	30036					0.0878718279154782
KVIDTLTPR	9	Unmodified	_KVIDTLTPR_					0	0	0			REV__MMRN1|p.E458K|1|0.82|ENSG00000138722|chr4:89935052-89935052|G/A|missense_variant	REV__MMRN1|p.E458K|1|0.82|ENSG00000138722|chr4:89935052-89935052|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.7471313476562	2	521.816399	1041.61824	-0.54336	-0.00028353	-0.69498	-0.00036265	-1.2383	-0.00064619	521.8162231985041	58.471	0.61478	58.471	58.237	58.852	0					31	14	3	0	0	0	0.027462	1	4999	4999		37.812	4.9991	1	977860	+		26833	28674	21954	21982	30037	30037					0.0991000488568261
KVIDTQQKV	9	Unmodified	_KVIDTQQKV_					0	0	0		ENSG00000113068|ENST00000261813|PFDN1;ENST00000507185.1_1_5:139661015-139682658:-|nuORF	ENSG00000113068|ENST00000261813|PFDN1	ENSG00000113068|ENST00000261813|PFDN1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.8135986328125	2	529.813856	1057.61316	-0.43885	-0.00023251	-0.5212	-0.00027614	-0.96005	-0.00050865	529.8138246825246	39.129	0.78737	39.129	38.882	39.669	0					47	17	4	0	0	0	0.0090534	2	2266	2266;2290		214.23	33.361	1	6346100			26834	2946	21955	21983	30038;30039	30038					0.0866570102307378
KVIDVPGPV	9	Unmodified	_KVIDVPGPV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	461.7437438964844	2	462.28166	922.548768	-0.95914	-0.00044339	0.71948	0.0003326	-0.23966	-0.00011079	462.28137826494424	117.27	0.15757	115.9	115.82	115.98	-1.3645					4	2	2	0	0	0	0.027456	1	10958	10958		30.504	0	1	4708			26835	5793;36288	21956	21984	30040	30040					0.08439545936948889
KVIEINPYL	9	Unmodified	_KVIEINPYL_					0	0	0		PSMB8|p.G255Vfs*3|1|0.1|ENSG00000204264|chr6:32841026-32841026|C/-|frameshift_variant;ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000100804|P28074-2|PSMB5;ENSG00000100804|ENST00000361611|PSMB5;nc|ENSG00000204264|P28062-2|PSMB8	PSMB8|p.G255Vfs*3|1|0.1|ENSG00000204264|chr6:32841026-32841026|C/-|frameshift_variant	PSMB8|p.G255Vfs*3|1|0.1|ENSG00000204264|chr6:32841026-32841026|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	544.822998046875	2	544.82115	1087.62775	1.8714	0.0010196	-0.44634	-0.00024318	1.425	0.00077639	544.8208728602101	102.91	1.217	102.91	102.68	103.89	0					83	28	5	0	0	0	0.055627	1	11476	11476		115.49	41.239	1	12333000			26836	8964	21957	21985	30041	30041					0.08743773171227076
KVIEINPYL	9	Unmodified	_KVIEINPYL_					0	0	0		PSMB8|p.G255Vfs*3|1|0.1|ENSG00000204264|chr6:32841026-32841026|C/-|frameshift_variant;ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000100804|P28074-2|PSMB5;ENSG00000100804|ENST00000361611|PSMB5;nc|ENSG00000204264|P28062-2|PSMB8	PSMB8|p.G255Vfs*3|1|0.1|ENSG00000204264|chr6:32841026-32841026|C/-|frameshift_variant	PSMB8|p.G255Vfs*3|1|0.1|ENSG00000204264|chr6:32841026-32841026|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	544.82080078125	2	544.82115	1087.62775	-1.0141	-0.00055252	0.29678	0.00016169	-0.71734	-0.00039082	544.8213006071867	103.63	1.6317	103.06	102.73	104.36	-0.57639					87	32	4	0	0	0	0.13326	4	9565	9565;9570;9575;9581		88.177	20.683	1	672420			26837	8964	21957	21985	30042;30043;30044;30045	30042					0.08743773171227076
KVIEINPYL	9	Unmodified	_KVIEINPYL_					0	0	0		PSMB8|p.G255Vfs*3|1|0.1|ENSG00000204264|chr6:32841026-32841026|C/-|frameshift_variant;ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000100804|P28074-2|PSMB5;ENSG00000100804|ENST00000361611|PSMB5;nc|ENSG00000204264|P28062-2|PSMB8	PSMB8|p.G255Vfs*3|1|0.1|ENSG00000204264|chr6:32841026-32841026|C/-|frameshift_variant	PSMB8|p.G255Vfs*3|1|0.1|ENSG00000204264|chr6:32841026-32841026|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	544.8216552734375	2	544.82115	1087.62775	0.23912	0.00013028	-0.98655	-0.00053749	-0.74743	-0.00040722	544.82058708923	104.53	1.976	103.1	102.66	104.63	-1.4347					96	37	4	0	0	0	0.13326	2	7290	7280;7290		88.177	10.859	1	847720			26838	8964	21957	21985	30046;30047	30047					0.08743773171227076
KVIEINPYL	9	Unmodified	_KVIEINPYL_					0	0	0		PSMB8|p.G255Vfs*3|1|0.1|ENSG00000204264|chr6:32841026-32841026|C/-|frameshift_variant;ENSG00000204264|ENST00000374882|PSMB8;nc|ENSG00000100804|P28074-2|PSMB5;ENSG00000100804|ENST00000361611|PSMB5;nc|ENSG00000204264|P28062-2|PSMB8	PSMB8|p.G255Vfs*3|1|0.1|ENSG00000204264|chr6:32841026-32841026|C/-|frameshift_variant	PSMB8|p.G255Vfs*3|1|0.1|ENSG00000204264|chr6:32841026-32841026|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.8211669921875	2	544.82115	1087.62775	-0.67318	-0.00036676	-0.067323	-3.6679E-05	-0.74051	-0.00040344	544.8211092336934	105.19	2.1342	103.18	102.85	104.98	-2.0161					101	41	4	0	0	0	0.040625	4	9549	9537;9549;9562;9574		126.24	33.047	1	776500			26839	8964	21957	21985	30048;30049;30050;30051	30049					0.08743773171227076
KVIESPWPL	9	Unmodified	_KVIESPWPL_					0	0	0		ENSG00000205978|ENST00000382554|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.7426147460938	2	534.808042	1067.60153	-0.42549	-0.00022755	2.6057	0.0013935	2.1802	0.001166	534.8093604267536	64.701	1.9332	64.701	63.732	65.665	0					84	47	2	0	0	0	0.027448	1	5934	5934		44.117	6.3053	1	529880			26840	9092	21958	21986	30052	30052					0.07043503999739187
KVIKHWFRNTL	11	Unmodified	_KVIKHWFRNTL_					0	0	0		ZFHX4|p.S2870Mfs*29|1|0.03|ENSG00000091656|chr8:76855527-76855545|CAAGCCCATCCATCCATTT/-|frameshift_variant;nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ENSG00000091656|ENST00000651372|ZFHX4;ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3	ZFHX4|p.S2870Mfs*29|1|0.03|ENSG00000091656|chr8:76855527-76855545|CAAGCCCATCCATCCATTT/-|frameshift_variant;ENSG00000140836|ENST00000268489|ZFHX3	ZFHX4|p.S2870Mfs*29|1|0.03|ENSG00000091656|chr8:76855527-76855545|CAAGCCCATCCATCCATTT/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	481.2824401855469	3	481.285739	1440.83539	-6.6786	-0.0032143	2.0959	0.0010087	-4.5828	-0.0022056	481.2868612614486	161.01	3.7232	159.65	158.49	162.21	-1.3523					206	77	3	0	0	0	0.72524	1	14101	14101		12.433	2.3289	1	127690			26841	1875;4876	21959	21987	30053	30053					0.13260400159106212
KVIKIDRLD	9	Unmodified	_KVIKIDRLD_					0	0	0			REV__nc|ENSG00000115484|P50991-2|CCT4	REV__nc|ENSG00000115484|P50991-2|CCT4	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.776123046875	2	550.345323	1098.67609	-0.47973	-0.00026402	0.55778	0.00030697	0.078049	4.2954E-05	550.3453019593053	69.481	0.36458	69.481	69.347	69.712	0					11	8	2	0	0	0	0.027462	1	6610	6610		19.997	0	1	141280	+		26842	18246	21960	21988	30054	30054					0.13070266811109832
KVIKILITI	9	Unmodified	_KVIKILITI_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	OvCa99_classI_Rep5	1	520.876708984375	2	520.875728	1039.7369	2.3379	0.0012177	-0.20723	-0.00010794	2.1306	0.0011098	520.8754650398729	102.51	1.8151	102.51	102	103.81	0					103	42	4	0	0	0	0.013607	3	11425	11400;11425;11455		157.33	64.134	1	3672500			26843	7740	21961	21989	30055;30056;30057	30056					0.2186240386135978
KVIKKAKEK	9	Unmodified	_KVIKKAKEK_					0	0	0		tr|A0A7D6ZV64|A0A7D6ZV64_9CLOTPhosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_02615PE=4SV=1	tr|A0A7D6ZV64|A0A7D6ZV64_9CLOTPhosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_02615PE=4SV=1	tr|A0A7D6ZV64|A0A7D6ZV64_9CLOTPhosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_02615PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3294067382812	2	536.366059	1070.71756	-0.97523	-0.00052308	-3.8502	-0.0020651	-4.8255	-0.0025882	536.3622390165747	34.328	0.23555	34.328	34.209	34.444	0					6	4	2	0	0	0	0.027462	1	1654	1654		32.812	19.853	1	44322			26844	35792	21962	21990	30058	30058					0.18503447570446951
KVIKLPSRS	9	Unmodified	_KVIKLPSRS_					0	0	0			REV__nc|ENSG00000082397|Q9Y2J2-3|EPB41L3	REV__nc|ENSG00000082397|Q9Y2J2-3|EPB41L3	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.7810668945312	2	514.334759	1026.65496	-0.28847	-0.00014837	0.01493	7.6791E-06	-0.27354	-0.00014069	514.3346061752966	68.685	1.035	68.685	68.233	69.268	0					29	24	2	0	0	0	0.027462	1	6553	6553		37.159	11.709	1	431090	+		26845	17085	21963	21991	30059	30059					0.14270301502256189
KVIKPNSG	8	Unmodified	_KVIKPNSG_					0	0	0		nc|ENSG00000168546|O00451-2|GFRA2;nc|ENSG00000168546|O00451-3|GFRA2;ENSG00000168546|ENST00000524240|GFRA2;ENST00000306793.4_1_8:21550792-21640469:-|nuORF	nc|ENSG00000168546|O00451-2|GFRA2	nc|ENSG00000168546|O00451-2|GFRA2	MULTI-MSMS	OvCa9_classI_Rep2	2	421.7583312988281	2	421.758352	841.502152	1.3122	0.00055342	-1.0755	-0.0004536	0.23667	9.9818E-05	421.7577701350753	29.614	1.4673	26.904	26.682	28.15	-2.7097					69	29	4	0	0	0	0.60331	1	784	784		63.306	11.971	1	542820			26846	6920	21964	21992	30060	30060					0.07506106105665822
KVILEKILT	9	Unmodified	_KVILEKILT_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23;nc|ENSG00000112282|Q9ULK4-6|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.8056030273438	2	528.854993	1055.69543	0.63424	0.00033542	-1.6936	-0.00089565	-1.0593	-0.00056023	528.8540535607096	87.336	0.64387	85.904	85.692	86.335	-1.4311					21	12	2	0	0	0	0.027462	1	7591	7591		12.812	10.287	1	22810			26847	2892	21965	21993	30061	30061					0.16981223102015974
KVILEKILT	9	Unmodified	_KVILEKILT_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23;nc|ENSG00000112282|Q9ULK4-6|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-MATCH	OvCa9_classI_Rep3	3		2	528.854993	1055.69543	-0.72913	-0.00038561	0.091007	4.813E-05	-0.63813	-0.00033748	528.854944535662	88.253	0.60474	86.122	85.906	86.51	-2.1309	0.076529	-0.00029496	NaN	18.262	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24241			26848	2892	21965	21993							0.16981223102015974
KVILEKILT	9	Unmodified	_KVILEKILT_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23;nc|ENSG00000112282|Q9ULK4-6|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	528.854993	1055.69543	-2.1934	-0.00116	1.6699	0.00088314	-0.52346	-0.00027683	528.8558837618174	88.713	0.64912	86.11	85.882	86.532	-2.6027	0.06468	0.0013751	NaN	18.262	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29371			26849	2892	21965	21993							0.16981223102015974
KVILLIAIL	9	Unmodified	_KVILLIAIL_					0	0	0		tr|A0A7D7A092|A0A7D7A092_9CLOTLCPfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09060PE=3SV=1	tr|A0A7D7A092|A0A7D7A092_9CLOTLCPfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09060PE=3SV=1	tr|A0A7D7A092|A0A7D7A092_9CLOTLCPfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09060PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.7728271484375	2	498.364996	994.715439	0.6877	0.00034273	1.6383	0.00081647	2.326	0.0011592	498.3658028323293	158.47	0.76749	158.47	158.32	159.09	0					26	15	2	0	0	0	0.027462	1	18624	18624		24.203	5.8783	1	34785			26850	35990	21966	21994	30062	30062					0.21787018832628746
KVILPAIII	9	Unmodified	_KVILPAIII_					0	0	0		tr|A0A553SHV5|A0A553SHV5_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_13660PE=3SV=1	tr|A0A553SHV5|A0A553SHV5_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_13660PE=3SV=1	tr|A0A553SHV5|A0A553SHV5_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_13660PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	490.3365783691406	2	490.349346	978.684139	-1.5694	-0.00076955	1.1647	0.0005711	-0.40471	-0.00019845	490.3499597350595	137	0.29475	135.91	135.71	136	-1.0858					8	5	2	0	0	0	0.027456	1	11150	11150		30.504	0	1	27716			26851	33316	21967	21995	30063	30063					0.19394445798559445
KVIQVIWMGK	10	Unmodified	_KVIQVIWMGK_					0	0	0		ENST00000406462.6_1_1:109474009-109474177:+|nuORF	ENST00000406462.6_1_1:109474009-109474177:+|nuORF	ENST00000406462.6_1_1:109474009-109474177:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	400.2493591308594	3	401.242372	1200.70529	2.1772	0.00087359	0.50389	0.00020218	2.6811	0.0010758	401.2424949985652	57.287	0.91743	53.942	53.628	54.546	-3.3449					31	17	2	0	0	0	0.026688	1	3680	3680		18.531	12.832	1	80249			26852	11482	21968	21996	30064	30064					0.11296087835762592
KVIQYPIMY	9	Oxidation (M)	_KVIQYPIM(Oxidation (M))Y_		KVIQYPIM(1)Y		KVIQYPIM(56)Y	0	0	1		chr1:165631293-165651014|103|20.11|0.8|4.66|+|0|MGST3,MGST3|1	chr1:165631293-165651014|103|20.11|0.8|4.66|+|0|MGST3,MGST3|1	chr1:165631293-165651014|103|20.11|0.8|4.66|+|0|MGST3,MGST3|1	MULTI-MSMS	OvCa9_classI_Rep2	2	585.8130493164062	2	585.81501	1169.61547	-0.10687	-6.2607E-05	-2.9285	-0.0017156	-3.0354	-0.0017782	585.8131917334592	109.95	1.4347	109.78	109.46	110.9	-0.17237					68	28	3	0	0	0	0.36502	1	10369	10369		55.504	7.8469	1	344850			26853	247	21969	21997	30065	30065		5			0.0374441343651597
KVIRDELSH	9	Unmodified	_KVIRDELSH_					0	0	0			REV__ENST00000481421.1_1_3:156431675-156432128:-|nuORF	REV__ENST00000481421.1_1_3:156431675-156432128:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	548.3652954101562	2	548.809105	1095.60366	-0.15435	-8.471E-05	3.388	0.0018594	3.2337	0.0017747	548.8109006242211	67.21	1.039	64.549	64.199	65.238	-2.661					34	20	2	0	0	0	0.027462	1	5275	5275		56.721	12.604	1	93919	+		26854	21467	21970	21998	30066	30066					0.059679327375761204
KVIREAPSVLI	11	Unmodified	_KVIREAPSVLI_					0	0	0		ENST00000565827.1_1_16:2508907-2509869:-|nuORF	ENST00000565827.1_1_16:2508907-2509869:-|nuORF	ENST00000565827.1_1_16:2508907-2509869:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	612.8865966796875	2	612.887355	1223.76016	4.3071	0.0026398	-4.3846	-0.0026872	-0.077441	-4.7463E-05	612.8847060890863	132.09	0.96576	130.59	130.27	131.24	-1.5015					29	18	2	0	0	0	0.70142	1	12718	12718		29.17	5.6474	1	29391			26855	13830	21971	21999	30067	30067					0.1572279790805169
KVIREAPSVLI	11	Unmodified	_KVIREAPSVLI_					0	0	0		ENST00000565827.1_1_16:2508907-2509869:-|nuORF	ENST00000565827.1_1_16:2508907-2509869:-|nuORF	ENST00000565827.1_1_16:2508907-2509869:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	612.887355	1223.76016	1.4242	0.00087288	-1.3683	-0.00083861	0.055919	3.4272E-05	612.8864310274865	131.74	0.79599	130.62	130.29	131.09	-1.1249	0.012602	0.0015496	NaN	29.17	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19059			26856	13830	21971	21999							0.1572279790805169
KVIRNLHSR	9	Unmodified	_KVIRNLHSR_					0	0	0		MER4-int_dup2271|chr13:22891256-22892771:+|2.029533609635038|0.1446850670061226|3.81|418.0|71|1|anti-sense	MER4-int_dup2271|chr13:22891256-22892771:+|2.029533609635038|0.1446850670061226|3.81|418.0|71|1|anti-sense	MER4-int_dup2271|chr13:22891256-22892771:+|2.029533609635038|0.1446850670061226|3.81|418.0|71|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.8449096679688	2	561.846356	1121.67816	-2.5142	-0.0014126	1.3558	0.00076176	-1.1584	-0.00065086	561.8469845001015	152.99	1.31	151.56	151.24	152.55	-1.4351					96	32	4	0	0	0	0.68424	1	15122	15122		21.96	1.013	1	225430			26857	14831	21972	22000	30068	30068					0.12218740339585565
KVISRMLE	8	Unmodified	_KVISRMLE_					0	0	0		ENSG00000185056|ENST00000340147|C5orf47	ENSG00000185056|ENST00000340147|C5orf47	ENSG00000185056|ENST00000340147|C5orf47	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.2862548828125	2	488.28642	974.558287	-0.26209	-0.00012797	-4.3464	-0.0021223	-4.6084	-0.0022502	488.2841897132088	101.66	1.3309	99.393	99.066	100.4	-2.2665					71	25	4	0	0	0	0.67745	1	9159	9159		47.916	1.9636	1	466970			26858	8222	21973	22001	30069	30069					0.0699899095083083
KVITASHCKS	10	Unmodified	_KVITASHCKS_					0	0	0		chr11:65455331-65466085|384|11.49|0.33|5.13|+|0|FAUP4,None|1	chr11:65455331-65466085|384|11.49|0.33|5.13|+|0|FAUP4,None|1	chr11:65455331-65466085|384|11.49|0.33|5.13|+|0|FAUP4,None|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.619384765625	2	537.292233	1072.56991	-0.30339	-0.00016301	-2.5612	-0.0013761	-2.8646	-0.0015391	537.290349910481	60.098	0.95944	60.098	59.686	60.646	0					25	23	2	0	0	0	0.026714	1	5267	5267		16.007	13.661	1	447320			26859	298	21974	22002	30070	30070					0.03653187974168759
KVIVGHIAL	9	Unmodified	_KVIVGHIAL_					0	0	0			REV__tr|A0A7D6ZZI6|A0A7D6ZZI6_9CLOTM18familyaminopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06230PE=3SV=1	REV__tr|A0A7D6ZZI6|A0A7D6ZZI6_9CLOTM18familyaminopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06230PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.9615783691406	2	475.313295	948.612037	-1.595	-0.00075815	-0.1654	-7.8617E-05	-1.7604	-0.00083676	475.31291534970103	108.35	0.65083	106.63	106.32	106.97	-1.7256					20	12	2	0	0	0	0.027462	1	9891	9891		18.324	4.5491	1	24794	+		26860	32412	21975	22003	30071	30071					0.1356753144484628
KVIVGHIALP	10	Unmodified	_KVIVGHIALP_					0	0	0			REV__tr|A0A7D6ZZI6|A0A7D6ZZI6_9CLOTM18familyaminopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06230PE=3SV=1	REV__tr|A0A7D6ZZI6|A0A7D6ZZI6_9CLOTM18familyaminopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06230PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	523.8399658203125	2	523.839677	1045.6648	-0.6268	-0.00032835	0.17947	9.4014E-05	-0.44733	-0.00023433	523.8396857548527	102.58	3.3388	101.05	100.63	103.97	-1.5211					147	63	4	0	0	0	0.39971	1	7075	7075		68.485	2.0554	1	1024800	+		26861	32412	21976	22004	30072	30072					0.14379489507655308
KVIVGNSLLE	10	Unmodified	_KVIVGNSLLE_					0	0	0			REV__tr|A0A7D6VVN7|A0A7D6VVN7_9CLOTATP-dependentzincmetalloproteaseFtsHOS=ClostridiumintestinaleOX=36845GN=hflBPE=3SV=1	REV__tr|A0A7D6VVN7|A0A7D6VVN7_9CLOTATP-dependentzincmetalloproteaseFtsHOS=ClostridiumintestinaleOX=36845GN=hflBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.8182373046875	2	536.324057	1070.63356	0.56471	0.00030287	-2.3778	-0.0012753	-1.8131	-0.00097239	536.3228528720603	67.719	0.58993	64.229	63.888	64.478	-3.4902					14	11	2	0	0	0	0.026653	1	5008	5008		58.23	12.258	1	25765	+		26862	31728	21977	22005	30073	30073					0.10106871682910423
KVIVGNSLLE	10	Unmodified	_KVIVGNSLLE_					0	0	0			REV__tr|A0A7D6VVN7|A0A7D6VVN7_9CLOTATP-dependentzincmetalloproteaseFtsHOS=ClostridiumintestinaleOX=36845GN=hflBPE=3SV=1	REV__tr|A0A7D6VVN7|A0A7D6VVN7_9CLOTATP-dependentzincmetalloproteaseFtsHOS=ClostridiumintestinaleOX=36845GN=hflBPE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	536.324057	1070.63356	-0.23031	-0.00012352	-8.8498	-0.0047463	-9.0801	-0.0048699	536.3191954573991	64.506	0.49977	64.506	64.21	64.71	0	0.13842	-0.00054231	NaN	58.23	31	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2619700	+		26863	31728	21977	22005							0.10106871682910423
KVIVSVVSIDP	11	Unmodified	_KVIVSVVSIDP_					0	0	0			REV__nc|ENSG00000143373|Q8N1G0-2|ZNF687	REV__nc|ENSG00000143373|Q8N1G0-2|ZNF687	MULTI-SECPEP	OvCa9_classI_Rep4_	4	579.304443359375	2	578.352814	1154.69108	-0.41856	-0.00024208	3.597	0.0020803	3.1784	0.0018382	578.3547979555482	86.988	0.79594	84.361	84.054	84.85	-2.6269					41	15	3	0	0	0	0.025528	1	7389	7389		28.081	7.1346	1	198380	+		26864	19835	21978	22006	30074	30074					0.11991713888460254
KVIVSVVSIDP	11	Unmodified	_KVIVSVVSIDP_					0	0	0			REV__nc|ENSG00000143373|Q8N1G0-2|ZNF687	REV__nc|ENSG00000143373|Q8N1G0-2|ZNF687	MULTI-MATCH	OvCa9_classI_Rep3	3		2	578.352814	1154.69108	-1.9482	-0.0011268	5.5239	0.0031947	3.5757	0.002068	578.3558904107025	86.578	0.80271	84.401	84.081	84.884	-2.1768	0.020061	0.00041865	NaN	28.081	47	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265990	+		26865	19835	21978	22006							0.11991713888460254
KVIYAEEPE	9	Unmodified	_KVIYAEEPE_					0	0	0			REV__nc|ENSG00000182168|O95185-2|UNC5C	REV__nc|ENSG00000182168|O95185-2|UNC5C	MULTI-MSMS	OvCa99_classI_Rep5	1	539.27978515625	2	539.276772	1076.53899	1.1393	0.00061438	4.2034	0.0022668	5.3426	0.0028812	539.278937733628	155.35	0.51071	155.35	155.07	155.58	0					22	9	3	0	0	0	0.19758	1	18203	18203		76.774	4.8967	1	150610	+		26866	22266	21979	22007	30075	30075					0.0037831314089089574
KVKAIGVSNF	10	Unmodified	_KVKAIGVSNF_					0	0	0		tr|A0A553SMW9|A0A553SMW9_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_23325PE=4SV=1;tr|A0A553SIZ5|A0A553SIZ5_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_15755PE=4SV=1	tr|A0A553SMW9|A0A553SMW9_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_23325PE=4SV=1	tr|A0A553SMW9|A0A553SMW9_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_23325PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8165893554688	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.79213	1	14086	14086		19.997	0	1	166960			26867	33444	21980	22008	30076	30076					0.09498308748334239
KVKATITKK	9	Unmodified	_KVKATITKK_					0	0	0		tr|A0A7D6ZG62|A0A7D6ZG62_9CLOTYbbR-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20995PE=4SV=1	tr|A0A7D6ZG62|A0A7D6ZG62_9CLOTYbbR-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20995PE=4SV=1	tr|A0A7D6ZG62|A0A7D6ZG62_9CLOTYbbR-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20995PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.81500244140625	2	508.844959	1015.67537	-0.72188	-0.00036732	-0.50175	-0.00025531	-1.2236	-0.00062264	508.8445456123266	74.996	0.46385	73.025	72.586	73.05	-1.9711					10	8	2	0	0	0	0.027462	1	6123	6123		19.104	0	1	32262			26868	35536	21981	22009	30077	30077					0.16815472162090828
KVKAVLKQV	9	Unmodified	_KVKAVLKQV_					0	0	0			REV__ENSG00000177303|ENST00000321617|CASKIN2	REV__ENSG00000177303|ENST00000321617|CASKIN2	MULTI-MSMS	OvCa99_classI_Rep5	1	506.84698486328125	2	506.847502	1011.68045	-0.55759	-0.00028261	0.070733	3.5851E-05	-0.48685	-0.00024676	506.84748614934307	41.554	1.211	41.554	41.285	42.496	0					72	27	4	0	0	0	0.18193	1	2594	2594		79.451	10.664	1	2806600	+		26869	21997	21982	22010	30078	30078					0.17507776024706345
KVKDGAKP	8	Unmodified	_KVKDGAKP_					0	0	0		nc|ENSG00000133858|O60293-4|ZFC3H1;nc|ENSG00000133858|O60293-2|ZFC3H1;ENSG00000133858|ENST00000378743|ZFC3H1	nc|ENSG00000133858|O60293-4|ZFC3H1	nc|ENSG00000133858|O60293-4|ZFC3H1	MULTI-MSMS	OvCa9_classI_Rep2	2	421.7585144042969	2	421.758352	841.502152	1.3122	0.00055342	-1.0755	-0.0004536	0.23667	9.9818E-05	421.7577701350753	29.614	1.4673	26.904	26.682	28.15	-2.7097					69	29	4	0	0	0	0.45246	1	759	759		82.305	0	1	542820			26870	4240	21983	22011	30079	30079					0.07506106105665822
KVKDTTFR	8	Unmodified	_KVKDTTFR_					0	0	0		ENSG00000157578|ENST00000288350|LCA5L	ENSG00000157578|ENST00000288350|LCA5L	ENSG00000157578|ENST00000288350|LCA5L	MULTI-MSMS	OvCa9_classI_Rep2	2	497.785400390625	2	497.787641	993.56073	-0.11038	-5.4945E-05	0.11227	5.5885E-05	0.0018873	9.3948E-07	497.7875261142517	66.888	0.9423	64.227	63.85	64.793	-2.661					53	18	4	0	0	0	0.48084	1	5203	5203		79.451	20.669	1	291090			26871	5902	21984	22012	30080	30080					0.06369162680130103
KVKEFTMI	8	Unmodified	_KVKEFTMI_					0	0	0			REV__ENSG00000165471|ENST00000674931|MBL2	REV__ENSG00000165471|ENST00000674931|MBL2	MULTI-MSMS	OvCa99_classI_Rep5	1	498.2861328125	2	498.283346	994.552139	0.40936	0.00020398	2.9795	0.0014846	3.3888	0.0016886	498.28471204404184	63.305	0.58918	63.305	63.058	63.648	0					37	14	4	0	0	0	0.40148	1	5689	5689		87.754	10.437	1	2031000	+		26872	21090	21985	22013	30081	30081					0.05464472719290825
KVKEHDIKT	9	Unmodified	_KVKEHDIKT_					0	0	0			REV__tr|A0A553SLN3|A0A553SLN3_NIACIPTSsugartransporterOS=NialliacirculansOX=1397GN=CEQ21_20990PE=4SV=1	REV__tr|A0A553SLN3|A0A553SLN3_NIACIPTSsugartransporterOS=NialliacirculansOX=1397GN=CEQ21_20990PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	550.2811279296875	2	549.319306	1096.62406	-1.1534	-0.0006336	1.6961	0.00093173	0.54272	0.00029813	549.3203699740445	95.533	1.7943	93.638	92.914	94.709	-1.8956					98	35	5	0	0	0	0.027461	1	6188	6188		32.812	0	1	266550	+		26873	30243	21986	22014	30082	30082					0.0796110339738334
KVKEKEER	8	Unmodified	_KVKEKEER_					0	0	0			REV__nc|ENSG00000171634|Q12830-4|BPTF	REV__nc|ENSG00000171634|Q12830-4|BPTF	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3034057617188	2	523.303655	1044.59276	-0.69596	-0.0003642	0.54848	0.00028702	-0.14748	-7.7179E-05	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.7549	1	13811	13811		24.203	0.68005	1	130240	+		26874	21633	21987	22015	30083	30083					0.07224530363282611
KVKEKKETSG	10	Unmodified	_KVKEKKETSG_					0	0	0			REV__nc|ENSG00000043143|Q9NQC1-3|JADE2	REV__nc|ENSG00000043143|Q9NQC1-3|JADE2	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3290405273438	2	567.32987	1132.64519	-2.3399	-0.0013275	2.1766	0.0012349	-0.16324	-9.2608E-05	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.72319	1	14723	14723		27.882	5.3026	1	241060	+		26875	16645	21988	22016	30084	30084					0.08417068706239661
KVKEQKDI	8	Unmodified	_KVKEQKDI_					0	0	0			REV__nc|ENSG00000101040|Q9ULU4-20|ZMYND8	REV__nc|ENSG00000101040|Q9ULU4-20|ZMYND8	MULTI-MSMS	OvCa9_classI_Rep2	2	494.29443359375	2	494.295299	986.576045	1.7975	0.0008885	-2.2609	-0.0011176	-0.46343	-0.00022907	494.2941466087284	90.898	1.7806	89.662	88.598	90.379	-1.2355					117	34	4	0	0	0	0.66057	1	8062	8062		51.335	1.3109	1	1147000	+		26876	26221	21989	22017	30085	30085					0.08222029477315118
KVKFGQND	8	Unmodified	_KVKFGQND_					0	0	0		nc|ENSG00000151952|Q14C87-2|TMEM132D;TMEM132D|p.T1049Afs*28|1|0.05|ENSG00000151952|chr12:129074030-129074031|-/ACTGTACTCTGGAATGTGTGCGTCGATGC|frameshift_variant;ENSG00000151952|ENST00000422113|TMEM132D;TMEM132D|p.K948Tfs*15|1|0.06|ENSG00000151952|chr12:129074331-129074332|TT/-|frameshift_variant	nc|ENSG00000151952|Q14C87-2|TMEM132D	nc|ENSG00000151952|Q14C87-2|TMEM132D	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.2752380371094	2	468.250892	934.48723	0.63643	0.00029801	-0.73806	-0.0003456	-0.10163	-4.7588E-05	468.25045437923177	72.144	0.37341	72.144	72	72.374	0					15	8	2	0	0	0	0.028476	1	7020	7020		34.173	0	1	572440			26877	5598	21990	22018	30086	30086					0.017366142376545213
KVKGFLFG	8	Unmodified	_KVKGFLFG_					0	0	0		nc|ENSG00000178997|Q8NHP7-2|EXD1;nc|ENSG00000178997|Q8NHP7|EXD1;ENSG00000178997|ENST00000458580|EXD1	nc|ENSG00000178997|Q8NHP7-2|EXD1	nc|ENSG00000178997|Q8NHP7-2|EXD1	MULTI-MSMS	OvCa9_classI_Rep2	2	448.2772216796875	2	448.273638	894.532724	5.9919	0.002686	2.0705	0.00092813	8.0623	0.0036141	448.2744393122276	25.364	1.3734	22.654	22.379	23.752	-2.7097					68	30	4	0	0	0	0.75991	1	249	249		21.702	2.3424	1	341610			26878	7792	21991	22019	30087	30087					0.08123884490703404
KVKGQSVPFY	10	Unmodified	_KVKGQSVPFY_					0	0	0			REV__tr|A0A553SSD5|A0A553SSD5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02925PE=4SV=1	REV__tr|A0A553SSD5|A0A553SSD5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02925PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	576.8248291015625	2	576.824224	1151.63389	0.33751	0.00019468	-0.48894	-0.00028203	-0.15143	-8.7346E-05	576.8238272522236	110.1	2.633	108.5	107.86	110.49	-1.6011					111	49	4	0	0	0	0.52439	1	10114	10114		51.193	5.2407	1	307950	+		26879	30826	21992	22020	30088	30088					0.06414291402757044
KVKGQSVPFY	10	Unmodified	_KVKGQSVPFY_					0	0	0			REV__tr|A0A553SSD5|A0A553SSD5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02925PE=4SV=1	REV__tr|A0A553SSD5|A0A553SSD5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02925PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	576.824224	1151.63389	-0.86338	-0.00049802	0.67429	0.00038895	-0.1891	-0.00010908	576.8244100524695	109.58	2.1727	108.43	108.09	110.26	-1.1444	0.037847	0.00053365	NaN	51.193	98	40	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	317390	+		26880	30826	21992	22020							0.06414291402757044
KVKGQSVPFY	10	Unmodified	_KVKGQSVPFY_					0	0	0			REV__tr|A0A553SSD5|A0A553SSD5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02925PE=4SV=1	REV__tr|A0A553SSD5|A0A553SSD5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02925PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	576.824224	1151.63389	0.33751	0.00019468	-0.48894	-0.00028203	-0.15143	-8.7346E-05	576.8238272522236	110.1	2.633	108.5	107.86	110.49	-1.6011	0.10958	-0.0008083	NaN	51.193	111	49	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307950	+		26881	30826	21992	22020							0.06414291402757044
KVKGSWKKFGG	11	Unmodified	_KVKGSWKKFGG_					0	0	0			REV__tr|A0A553SKT1|A0A553SKT1_NIACIRhodanese-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_19385PE=4SV=1	REV__tr|A0A553SKT1|A0A553SKT1_NIACIRhodanese-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_19385PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	611.355224609375	2	611.358765	1220.70298	-3.7398	-0.0022864	-0.61625	-0.00037675	-4.3561	-0.0026631	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.70761	1	15301	15301		27.047	1.4733	1	331570	+		26882	30150	21993	22021	30089	30089					0.10145375422303005
KVKHVKKL	8	Unmodified	_KVKHVKKL_					0	0	0		nc|ENSG00000134909|A7KAX9|ARHGAP32	nc|ENSG00000134909|A7KAX9|ARHGAP32	nc|ENSG00000134909|A7KAX9|ARHGAP32	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.7737121582031	2	490.342387	978.67022	-1.0761	-0.00052767	0.51361	0.00025184	-0.56251	-0.00027582	490.3427407257789	65.644	0.15777	65.644	65.507	65.665	0					6	3	2	0	0	0	0.028476	1	6034	6034		26.796	17.974	1	80232			26883	15029	21994	22022	30090	30090					0.18003213090128156
KVKIDGALIT	10	Unmodified	_KVKIDGALIT_					0	0	0			REV__ENSG00000170604|ENST00000302165|IRF2BP1	REV__ENSG00000170604|ENST00000302165|IRF2BP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3463134765625	2	529.334424	1056.6543	2.5098	0.0013285	-0.32685	-0.00017301	2.1829	0.0011555	529.3341724399678	75.503	0.6647	75.503	75.209	75.874	0					41	16	3	0	0	0	0.026906	1	7554	7554		49.536	21.654	1	2573100	+		26884	21550	21995	22023	30091	30091					0.12823462062556246
KVKIIFIR	8	Unmodified	_KVKIIFIR_					0	0	0		nc|ENSG00000107186|O75970-5|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-2|MPDZ;ENSG00000107186|ENST00000319217|MPDZ;ENST00000539508.5_1_9:13136054-13190160:-|nuORF	nc|ENSG00000107186|O75970-5|MPDZ	nc|ENSG00000107186|O75970-5|MPDZ	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.8159484863281	2	508.852587	1015.69062	-0.77321	-0.00039345	3.7987	0.001933	3.0255	0.0015395	508.8543243186845	75.113	0.23903	72.703	72.631	72.87	-2.4106					11	4	3	0	0	0	0.028476	1	3779	3779		26.796	6.3143	1	47104			26885	2594	21996	22024	30092	30092					0.1834038374992133
KVKIKSNPR	9	Unmodified	_KVKIKSNPR_					0	0	0			REV__ENSG00000010072|ENST00000295050|SPRTN	REV__ENSG00000010072|ENST00000295050|SPRTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.342041015625	2	535.345658	1068.67676	-0.42598	-0.00022805	0.43089	0.00023067	0.0049037	2.6252E-06	535.3456591602021	41.427	0.26569	41.427	41.24	41.505	0					9	5	2	0	0	0	0.027462	1	2575	2575		23.042	0	1	42795	+		26886	16473	21997	22025	30093	30093					0.14517106250832512
KVKKEKRR	8	Unmodified	_KVKKEKRR_					0	0	0			REV__ENSG00000114857|ENST00000232978|NKTR	REV__ENSG00000114857|ENST00000232978|NKTR	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.34228515625	2	536.359099	1070.70365	-0.69889	-0.00037485	3.3683	0.0018066	2.6694	0.0014318	536.359527481721	39.948	0.26218	39.948	39.798	40.06	0					9	5	2	0	0	0	0.028476	1	2399	2399		35.618	0	1	76552	+		26887	18207	21998	22026	30094	30094					0.1711221486202703
KVKKEKRR	8	Unmodified	_KVKKEKRR_					0	0	0			REV__ENSG00000114857|ENST00000232978|NKTR	REV__ENSG00000114857|ENST00000232978|NKTR	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.34326171875	2	536.359099	1070.70365	-1.9201	-0.0010299	-0.3918	-0.00021015	-2.3119	-0.00124	536.359473831555	45.14	0.4146	42.101	41.971	42.386	-3.0385					11	7	3	0	0	0	0.028476	1	2277	2277		17.365	0.89182	1	27768	+		26888	18207	21998	22026	30095	30095					0.1711221486202703
KVKKRVSFAH	10	Unmodified	_KVKKRVSFAH_					0	0	0		PPP1R3B|p.D67H|1|0.1|ENSG00000173281|chr8:9141453-9141453|C/G|missense_variant	PPP1R3B|p.D67H|1|0.1|ENSG00000173281|chr8:9141453-9141453|C/G|missense_variant	PPP1R3B|p.D67H|1|0.1|ENSG00000173281|chr8:9141453-9141453|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	400.58673095703125	3	400.583897	1198.72986	4.6344	0.0018565	3.7415	0.0014988	8.3759	0.0033553	400.58524212682823	26.421	0.50592	23.711	23.567	24.073	-2.7097					20	12	2	0	0	0	0.74773	1	378	378		25.126	0.6068	1	24033			26889	15518	21999	22027	30096	30096					0.13844484033506887
KVKKSIGSVF	10	Unmodified	_KVKKSIGSVF_					0	0	0		tr|A0A7D6ZRE2|A0A7D6ZRE2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12335PE=4SV=1	tr|A0A7D6ZRE2|A0A7D6ZRE2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12335PE=4SV=1	tr|A0A7D6ZRE2|A0A7D6ZRE2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12335PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	546.840576171875	2	546.842416	1091.67028	-4.8246	-0.0026383	1.033	0.00056488	-3.7916	-0.0020734	546.8429110027589	158.57	1.287	158.34	158.06	159.35	-0.22697					77	26	5	0	0	0	0.73378	1	16149	16149		26.693	3.6504	1	487190			26890	35713	22000	22028	30097	30097					0.12811168299458586
KVKKYRRS	8	Unmodified	_KVKKYRRS_					0	0	0			REV__ENST00000529132.1_1_11:67172517-67173239:+|nuORF	REV__ENST00000529132.1_1_11:67172517-67173239:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	532.8091430664062	2	532.838	1063.66145	-1.6528	-0.00088066	4.1994	0.0022376	2.5466	0.0013569	532.8402659926553	76.557	0.26234	74.703	74.466	74.728	-1.854					6	4	2	0	0	0	0.028476	1	6333	6333		30.504	0	1	9996.7	+		26891	21898	22001	22029	30098	30098					0.1321623945364081
KVKLEMKEE	9	Unmodified	_KVKLEMKEE_					0	0	0		ENSG00000128944|ENST00000249776|KNSTRN;ENST00000416151.6_1_15:40685627-40685795:+|nuORF;ENST00000560220.5_1_15:40676698-40685795:+|nuORF	ENSG00000128944|ENST00000249776|KNSTRN	ENSG00000128944|ENST00000249776|KNSTRN	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3141479492188	2	567.315374	1132.6162	2.0704	0.0011746	-2.1966	-0.0012462	-0.12617	-7.1576E-05	567.3139739099872	57.536	1.95	54.41	53.788	55.738	-3.1264					89	52	3	0	0	0	0.65371	1	1754	1754		25.574	1.0549	1	66904			26892	3915	22002	22030	30099	30099					0.055192080855931636
KVKLLTESV	9	Unmodified	_KVKLLTESV_					0	0	0		ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532-4|DMD;DMD|p.I1389*|1|0.08|ENSG00000198947|chrX:32411819-32411820|AT/-|frameshift_variant	ENSG00000198947|ENST00000357033|DMD	ENSG00000198947|ENST00000357033|DMD	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.7882080078125	2	508.82115	1015.62775	-1.2055	-0.0006134	0.57451	0.00029232	-0.63104	-0.00032108	508.8213359224362	100.74	1.4232	98.471	98.083	99.506	-2.2665					82	28	6	0	0	0	0.027462	1	9107	9107		24.519	0	1	810670			26893	8914	22003	22031	30100	30100					0.12055773171221063
KVKLNYNL	8	Unmodified	_KVKLNYNL_					0	0	0			REV__nc|ENSG00000115415|P42224-2|STAT1	REV__nc|ENSG00000115415|P42224-2|STAT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.7695007324219	2	496.300384	990.586216	-1.0029	-0.00049774	0.58473	0.0002902	-0.41817	-0.00020754	496.2993290964924	66.002	0.22951	66.002	65.945	66.174	0					6	5	2	0	0	0	0.028476	1	6110	6110		19.36	0	1	138230	+		26894	18243	22004	22032	30101	30101					0.0905463720255284
KVKLTFGQL	9	Unmodified	_KVKLTFGQL_					0	0	0			REV__tr|A0A7D7AC87|A0A7D7AC87_9CLOTSulfate/molybdateABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18245PE=4SV=1	REV__tr|A0A7D7AC87|A0A7D7AC87_9CLOTSulfate/molybdateABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18245PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.7739868164062	2	517.32386	1032.63317	1.9861	0.0010274	0.11237	5.8132E-05	2.0984	0.0010856	517.3238185451635	86.081	0.71944	86.081	85.791	86.511	0					36	17	3	0	0	0	0.027425	1	9031	9031		51.193	15.574	1	979540	+		26895	32686	22005	22033	30102	30102					0.11815496753729349
KVKPEDRR	8	Unmodified	_KVKPEDRR_					0	0	0			REV__nc|ENSG00000139220|O75334-7|PPFIA2	REV__nc|ENSG00000139220|O75334-7|PPFIA2	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.301025390625	2	514.30399	1026.59343	-1.2863	-0.00066153	1.9843	0.0010205	0.69801	0.00035899	514.3049089302478	50.701	0.81425	47.528	47.36	48.174	-3.1734					35	15	3	0	0	0	0.66057	1	2933	2933		51.335	1.8939	1	195660	+		26896	19599	22006	22034	30103	30103					0.0811936980298924
KVKPEDRR	8	Unmodified	_KVKPEDRR_					0	0	0			REV__nc|ENSG00000139220|O75334-7|PPFIA2	REV__nc|ENSG00000139220|O75334-7|PPFIA2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.30399	1026.59343	-1.0359	-0.00053276	1.6047	0.0008253	0.56881	0.00029254	514.3046153601359	50.399	1.1398	47.605	47.132	48.272	-2.794	0.038833	-0.00027007	NaN	51.335	42	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60559	+		26897	19599	22006	22034							0.0811936980298924
KVKPEDRR	8	Unmodified	_KVKPEDRR_					0	0	0			REV__nc|ENSG00000139220|O75334-7|PPFIA2	REV__nc|ENSG00000139220|O75334-7|PPFIA2	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	514.30399	1026.59343	-1.2863	-0.00066153	1.9843	0.0010205	0.69801	0.00035899	514.3049089302478	50.701	0.81425	47.528	47.36	48.174	-3.1734	-0.038833	0.00012037	NaN	51.335	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195660	+		26898	19599	22006	22034							0.0811936980298924
KVKQDVKNLK	10	Unmodified	_KVKQDVKNLK_					0	0	0			REV__ENSG00000126814|ENST00000261249|TRMT5	REV__ENSG00000126814|ENST00000261249|TRMT5	MULTI-MSMS	OvCa9_classI_Rep2	2	600.376953125	2	600.377155	1198.73976	2.4727	0.0014845	-2.4024	-0.0014424	0.070273	4.219E-05	600.3755689581569	26.426	0.84442	23.716	23.517	24.362	-2.7097					46	24	3	0	0	0	0.77039	1	385	385		22.58	4.3176	1	69653	+		26899	18797	22007	22035	30104	30104					0.1483362724820836
KVKRASVY	8	Unmodified	_KVKRASVY_					0	0	0		ENSG00000180113|ENST00000316081|TDRD6;nc|ENSG00000180113|O60522-2|TDRD6;TDRD6|p.V938Wfs*4|1|0.11|ENSG00000180113|chr6:46690940-46690940|G/-|frameshift_variant	ENSG00000180113|ENST00000316081|TDRD6	ENSG00000180113|ENST00000316081|TDRD6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	474.9192810058594	2	475.792727	949.5709	-0.24015	-0.00011426	-0.57705	-0.00027456	-0.8172	-0.00038882	475.7925824917535	94.994	0.70171	92.525	92.26	92.962	-2.4685					29	13	3	0	0	0	0.028476	1	8338	8338		33.516	8.0654	1	73927			26900	7857	22008	22036	30105	30105					0.09409770405363815
KVKRKTQP	8	Unmodified	_KVKRKTQP_					0	0	0		HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|22|1|sense	HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|22|1|sense	HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|22|1|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	492.8184814453125	2	492.819276	983.623999	-1.0524	-0.00051866	0.60887	0.00030006	-0.44358	-0.0002186	492.81937696825383	61.985	2.6287	59.225	58.882	61.511	-2.7593					139	50	4	0	0	0	0.73938	1	4647	4647		31.955	2.8053	1	798600			26901	14426	22009	22037	30106	30106					0.13153148188030173
KVKRVDPA	8	Unmodified	_KVKRVDPA_					0	0	0			REV__nc|ENSG00000183715|Q14982-3|OPCML	REV__nc|ENSG00000183715|Q14982-3|OPCML	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.2696533203125	2	456.784902	911.55525	-0.40229	-0.00018376	0.60286	0.00027538	0.20057	9.1617E-05	456.78498606984647	41.572	0.39057	41.572	41.375	41.766	0					16	8	3	0	0	0	0.028476	1	2582	2582		51.335	7.2187	1	206620	+		26902	22378	22010	22038	30107	30107					0.09593483888306764
KVKSAELEKI	10	Unmodified	_KVKSAELEKI_					0	0	0			REV__ENSG00000029725|ENST00000537505|RABEP1	REV__ENSG00000029725|ENST00000537505|RABEP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.8421630859375	2	572.850438	1143.68632	1.1468	0.00065694	1.7107	0.00097997	2.8575	0.0016369	572.8511141570979	79.224	0.47786	79.224	78.996	79.474	0					28	10	4	0	0	0	0.028125	1	8057	8057		85.161	0	1	1308400	+		26903	16583	22011	22039	30108	30108					0.12022829745706076
KVKSLFVRG	9	Unmodified	_KVKSLFVRG_					0	0	0		tr|A0A553SNJ1|A0A553SNJ1_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_24615PE=4SV=1	tr|A0A553SNJ1|A0A553SNJ1_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_24615PE=4SV=1	tr|A0A553SNJ1|A0A553SNJ1_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_24615PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3279418945312	2	517.329476	1032.6444	-0.96898	-0.00050128	0.18183	9.4066E-05	-0.78715	-0.00040722	517.3296389860662	52.976	1.0878	50.162	49.887	50.975	-2.8139					50	21	3	0	0	0	0.56889	1	3576	3576		35.618	1.4457	1	189920			26904	33929	22012	22040	30109	30109					0.129383188478414
KVKSPLFGPGL	11	Unmodified	_KVKSPLFGPGL_					0	0	0			REV__ENST00000339570.9_1_12:125262502-125262823:-|nuORF	REV__ENST00000339570.9_1_12:125262502-125262823:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	571.798583984375	2	571.850242	1141.68593	-1.5349	-0.00087775	-0.58072	-0.00033209	-2.1156	-0.0012098	571.8498100990704	50.459	0.25967	47.318	47.132	47.392	-3.1416					5	4	2	0	0	0	0.02538	1	2890	2890		45.972	5.1941	1	7365.1	+		26905	24614	22013	22041	30110	30110					0.12075454816499587
KVKSTEVEI	9	Unmodified	_KVKSTEVEI_					0	0	0		ENSG00000160953|ENST00000591337|PWWP3A;nc|ENSG00000160953|Q2TAK8-3|PWWP3A	ENSG00000160953|ENST00000591337|PWWP3A	ENSG00000160953|ENST00000591337|PWWP3A	MULTI-MSMS	OvCa99_classI_Rep5	1	516.801513671875	2	516.800414	1031.58628	-0.53286	-0.00027538	-0.056953	-2.9433E-05	-0.58982	-0.00030482	516.8002583298056	44.79	0.96794	44.79	44.528	45.496	0					45	21	3	0	0	0	0.1944	1	3070	3070		77.318	5.4401	1	3357700			26906	6108	22014	22042	30111	30111					0.07174592411888625
KVKSYKKY	8	Unmodified	_KVKSYKKY_					0	0	0			REV__tr|A0A553SUD7|A0A553SUD7_NIACIZincmetallopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_06830PE=4SV=1	REV__tr|A0A553SUD7|A0A553SUD7_NIACIZincmetallopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_06830PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.7655639648438	2	522.316035	1042.61752	-1.1918	-0.00062251	-3.5811	-0.0018705	-4.7729	-0.002493	522.3141148802134	44.397	0.53874	44.397	44.123	44.662	0					22	11	3	0	0	0	0.028476	1	2968	2968		11.511	7.5258	1	290360	+		26907	31065	22015	22043	30112	30112					0.09791210236653569
KVKTERNV	8	Unmodified	_KVKTERNV_					0	0	0			REV__ENSG00000169299|ENST00000381967|PGM2	REV__ENSG00000169299|ENST00000381967|PGM2	MULTI-SECPEP	OvCa9_classI_Rep2	2	488.2839660644531	2	487.293091	972.571629	-0.73981	-0.00036051	-2.9703	-0.0014474	-3.7101	-0.0018079	487.29165043116285	100.36	0.29729	99.533	99.36	99.658	-0.83051					8	5	2	0	0	0	0.028476	1	9168	9168		23.042	10.836	1	18105	+		26908	21452	22016	22044	30113	30113					0.08424565054417599
KVKTLMEFI	9	Unmodified	_KVKTLMEFI_					0	0	0		ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.780517578125	2	554.825378	1107.6362	0.23112	0.00012823	2.3573	0.0013079	2.5885	0.0014361	554.8268524364985	47.27	0.85777	44.198	43.81	44.668	-3.0724					21	16	2	0	0	0	0.027462	1	2531	2531		25.574	0	1	22624			26909	1535	22017	22045	30114	30114					0.08669003816203258
KVKTPQPKK	9	Unmodified	_KVKTPQPKK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MULTI-MSMS	OvCa9_classI_Rep2	2	527.3428955078125	2	527.342584	1052.67061	2.2817	0.0012032	-2.4212	-0.0012768	-0.13953	-7.3579E-05	527.3412130770646	27.081	0.8382	24.371	24.073	24.911	-2.7097					49	23	3	0	0	0	0.53483	1	436	436		39.253	5.0803	1	32709			26910	3662	22018	22046	30115	30115					0.1463858801932929
KVKTYLNQV	9	Unmodified	_KVKTYLNQV_					0	0	0		ENSG00000196440|ENST00000423738|ARMCX4	ENSG00000196440|ENST00000423738|ARMCX4	ENSG00000196440|ENST00000423738|ARMCX4	MULTI-MSMS	OvCa99_classI_Rep5	1	546.823486328125	2	546.824224	1091.63389	-0.28343	-0.00015498	-0.49794	-0.00027229	-0.78136	-0.00042727	546.8240233396563	33.261	1.0282	33.261	32.796	33.824	0					48	20	5	0	0	0	0.11471	1	1510	1510		93.195	4.1666	1	1841600			26911	8609	22019	22047	30116	30116					0.09174291402746348
KVKVLAHHM	9	Unmodified	_KVKVLAHHM_					0	0	0		ENST00000343505.9_2_6:138754136-138754187:-|nuORF	ENST00000343505.9_2_6:138754136-138754187:-|nuORF	ENST00000343505.9_2_6:138754136-138754187:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8167724609375	2	531.815679	1061.6168	-1.6193	-0.00086116	3.9009	0.0020745	2.2816	0.0012134	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.59983	1	11684	11684		31.955	5.2619	1	178650			26912	10599	22020	22048	30117	30117					0.08846092315957321
KVKVLAHHM	9	Unmodified	_KVKVLAHHM_					0	0	0		ENST00000343505.9_2_6:138754136-138754187:-|nuORF	ENST00000343505.9_2_6:138754136-138754187:-|nuORF	ENST00000343505.9_2_6:138754136-138754187:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	531.8167114257812	2	531.815679	1061.6168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.52	1	135.98	135.48	136.48	-1.5437								0	0	0	0.18203	1	13369	13369		31.955	11.958	1				26913	10599	22020	22048	30118	30118					0.08846092315957321
KVKWVRHPLLL	11	Unmodified	_KVKWVRHPLLL_					0	0	0			REV__ENSG00000128731|ENST00000261609|HERC2	REV__ENSG00000128731|ENST00000261609|HERC2	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.28460693359375	3	463.63448	1387.88161	-0.44288	-0.00020533	-2.4571	-0.0011392	-2.9	-0.0013445	463.6333014855352	94.849	0.78642	93.75	93.46	94.246	-1.0995					21	15	2	0	0	0	0.025911	1	8542	8542		6.001	0	1	17349	+		26914	18868	22021	22049	30119	30119					0.20318465061222923
KVLAHFVAM	9	Unmodified	_KVLAHFVAM_					0	0	0		ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.3082275390625	2	508.291505	1014.56846	-0.96199	-0.00048897	-1.3832	-0.00070309	-2.3452	-0.0011921	508.2912088703204	48.395	0.99594	45.654	45.051	46.047	-2.7415					32	19	3	0	0	0	0.027462	1	2934	2934		25.45	7.1258	1	31554			26915	7859	22022	22050	30120	30120					0.061755986760545056
KVLAVEWYP	9	Unmodified	_KVLAVEWYP_					0	0	0			REV__nc|ENSG00000130023|Q5T6L9-4|ERMARD	REV__nc|ENSG00000130023|Q5T6L9-4|ERMARD	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.2726440429688	2	552.808042	1103.60153	1.1339	0.00062683	0.98228	0.00054301	2.1162	0.0011698	552.8084939637774	138.88	0.77048	138.88	138.5	139.27	0					26	15	3	0	0	0	0.027433	1	16163	16163		34.173	11.13	1	126470	+		26916	18915	22023	22051	30121	30121					0.05387503999736509
KVLCERGNSL	10	Unmodified	_KVLCERGNSL_					0	0	0		ENST00000463422.5_1_2:85981774-86000028:+|nuORF;nc|ENSG00000168874|Q96SQ7-2|ATOH8	ENST00000463422.5_1_2:85981774-86000028:+|nuORF	ENST00000463422.5_1_2:85981774-86000028:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	559.8041381835938	2	559.802965	1117.59138	2.5187	0.00141	0.29016	0.00016243	2.8089	0.0015724	559.8031270985522	82.06	1.341	82.06	81.694	83.035	0					70	31	4	0	0	0	0.48398	1	8489	8489		56.434	6.4093	1	5595400			26917	12225	22024	22052	30122	30122					0.037285730028543185
KVLDKLLLY	9	Unmodified	_KVLDKLLLY_					0	0	0		nc|ENSG00000087087|Q9BXP5-5|SRRT;nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT	nc|ENSG00000087087|Q9BXP5-5|SRRT	nc|ENSG00000087087|Q9BXP5-5|SRRT	MULTI-MSMS	OvCa9_classI_Rep2	2	552.8544311523438	2	552.854993	1103.69543	-0.081199	-4.4891E-05	-0.19005	-0.00010507	-0.27125	-0.00014996	552.8547372876944	103.29	1.2841	102.6	102.33	103.61	-0.68459					72	25	4	0	0	0	0.20111	1	9534	9534		76.17	15.766	1	243990			26918	1762	22025	22053	30123	30123					0.1477322310204272
KVLDTIMATKL	11	Unmodified	_KVLDTIMATKL_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	OvCa9_classI_Rep4_	4	616.8679809570312	2	616.867774	1231.72099	-1.0492	-0.00064724	1.2321	0.00076007	0.18291	0.00011283	616.8683541139678	100.27	1.0733	97.945	97.568	98.641	-2.3253					51	20	3	0	0	0	0.060853	1	8970	8970		155.53	84.717	1	322790			26919	7356	22026	22054	30124	30124					0.11440329562128682
KVLDTIMATKL	11	Unmodified	_KVLDTIMATKL_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MATCH	OvCa9_classI_Rep2	2		2	616.867774	1231.72099	-1.0385	-0.00064063	0.63222	0.00038999	-0.40631	-0.00025064	616.8679706447225	98.617	1.3422	97.724	97.361	98.703	-0.89306	-0.17816	-0.00016715	NaN	155.53	71	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	277370			26920	7356	22026	22054							0.11440329562128682
KVLDTIMATKL	11	Unmodified	_KVLDTIMATKL_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MATCH	OvCa9_classI_Rep3	3		2	616.867774	1231.72099	0.71227	0.00043937	-0.98011	-0.0006046	-0.26784	-0.00016522	616.866973497259	99.721	1.5383	98.036	97.676	99.214	-1.685	0.13459	-0.0021563	NaN	155.53	64	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233230			26921	7356	22026	22054							0.11440329562128682
KVLEEELLI	9	Unmodified	_KVLEEELLI_					0	0	0		tr|A0A553SQ42|A0A553SQ42_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_19225PE=4SV=1	tr|A0A553SQ42|A0A553SQ42_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_19225PE=4SV=1	tr|A0A553SQ42|A0A553SQ42_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_19225PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	543.8097534179688	2	543.326265	1084.63798	0.21251	0.00011546	0.5491	0.00029834	0.76161	0.0004138	543.3263380792126	113.11	0.83938	112.98	112.62	113.46	-0.12174					34	16	3	0	0	0	0.02741	1	10773	10773		51.335	10.557	1	93865			26922	34117	22027	22055	30125	30125					0.09904336105796574
KVLEQARK	8	Unmodified	_KVLEQARK_					0	0	0		tr|A0A7D6VZM9|A0A7D6VZM9_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_20340PE=4SV=1	tr|A0A7D6VZM9|A0A7D6VZM9_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_20340PE=4SV=1	tr|A0A7D6VZM9|A0A7D6VZM9_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_20340PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.3032531738281	2	486.303458	970.592364	0.91147	0.00044325	-1.0195	-0.00049581	-0.10807	-5.2556E-05	486.302842900714	35.165	1.4521	32.316	31.987	33.439	-2.849					75	28	4	0	0	0	0.66057	1	1120	1120		51.335	0	1	400850			26923	35364	22028	22056	30126	30126					0.10589155434081476
KVLERVNAV	9	Unmodified	_KVLERVNAV_					0	0	0		ENST00000471700.6_1_14:24612807-24615772:-|nuORF;ENSG00000100911|ENST00000216802|PSME2;ENST00000559359.1_1_14:24613399-24613677:-|nuORF;ENST00000453033.1_1_13:49345602-49345743:+|nuORF;ENST00000442824.1_1_5:97549420-97549822:+|nuORF	ENST00000471700.6_1_14:24612807-24615772:-|nuORF	ENST00000471700.6_1_14:24612807-24615772:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	514.3177490234375	2	514.316566	1026.61858	-0.67072	-0.00034496	0.10407	5.3526E-05	-0.56664	-0.00029143	514.3166575175037	49.271	1.125	49.271	49.031	50.156	0					66	25	4	0	0	0	0.16264	1	3661	3661		82.75	13.123	1	6774500			26924	2121	22029	22057	30127	30127					0.10633424605566688
KVLEVACNM	9	Unmodified	_KVLEVACNM_					0	0	0		tr|A0A553SSX3|A0A553SSX3_NIACIClassISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_03960PE=4SV=1	tr|A0A553SSX3|A0A553SSX3_NIACIClassISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_03960PE=4SV=1	tr|A0A553SSX3|A0A553SSX3_NIACIClassISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_03960PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.7635803222656	2	503.756638	1005.49872	-0.93583	-0.00047143	4.2109	0.0021213	3.2751	0.0016498	504.2610200960388	63.142	0.6276	59.667	59.433	60.061	-3.475					15	12	2	0	0	0	0.027418	1	4424	4424		49.442	10.635	1	57068			26925	34432	22030	22058	30128	30128					-0.003806480548746549
KVLFKKMWHIY	11	Unmodified	_KVLFKKMWHIY_					0	0	0		ENST00000356189.5_1_10:15120101-15120344:-|nuORF	ENST00000356189.5_1_10:15120101-15120344:-|nuORF	ENST00000356189.5_1_10:15120101-15120344:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	498.6213684082031	3	498.288092	1491.84245	-0.4969	-0.0002476	-0.9919	-0.00049425	-1.4888	-0.00074185	498.2875261435202	24.112	0.40049	24.112	23.886	24.287	0					17	7	3	0	0	0	0.7246	1	416	416		20.837	0.80668	1	47311			26926	10691	22031	22059	30129	30129					0.11619996715353409
KVLGALLFV	9	Unmodified	_KVLGALLFV_					0	0	0		ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	MULTI-MSMS	OvCa9_classI_Rep2	2	480.3175048828125	2	480.318046	958.621539	0.60293	0.0002896	-0.4826	-0.0002318	0.12033	5.7799E-05	480.3176337071437	130.34	1.4398	130.11	129.86	131.3	-0.22697					62	28	4	0	0	0	0.52083	2	12815	12809;12815		40.573	5.3719	1	107540			26927	7915	22032	22060	30130;30131	30131					0.14057299730382056
KVLGALLFV	9	Unmodified	_KVLGALLFV_					0	0	0		ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	MULTI-MSMS	OvCa9_classI_Rep3	3	480.31744384765625	2	480.318046	958.621539	0.28938	0.000139	-0.33238	-0.00015965	-0.042999	-2.0653E-05	480.317700980333	131.71	1.0449	130.58	130.29	131.34	-1.1249					43	20	3	0	0	0	0.44294	1	10500	10500		47.916	9.1095	1	66984			26928	7915	22032	22060	30132	30132					0.14057299730382056
KVLGALLFV	9	Unmodified	_KVLGALLFV_					0	0	0		ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.3181457519531	2	480.318046	958.621539	4.0104	0.0019263	-4.1147	-0.0019764	-0.10425	-5.0071E-05	480.3158855709112	132.07	1.2133	130.57	130.27	131.48	-1.5014					57	23	4	0	0	0	0.53957	1	12702	12702		38.806	6.8513	1	95732			26929	7915	22032	22060	30133	30133					0.14057299730382056
KVLGALVEL	9	Unmodified	_KVLGALVEL_					0	0	0		ENSG00000119508|ENST00000395097|NR4A3;nc|ENSG00000119508|Q92570-3|NR4A3	ENSG00000119508|ENST00000395097|NR4A3	ENSG00000119508|ENST00000395097|NR4A3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.2955322265625	2	471.305136	940.595718	0.20885	9.8434E-05	-0.44791	-0.0002111	-0.23905	-0.00011267	471.30477814724463	95.927	1.167	93.501	93.204	94.371	-2.4256					40	22	2	0	0	0	0.027462	1	8508	8508		27.882	4.8398	1	46617			26930	3366	22033	22061	30134	30134					0.12304405488100656
KVLGMAPVL	9	Unmodified	_KVLGMAPVL_					0	0	0		ZSCAN21|p.E111Ifs*100|1|0.28|ENSG00000166529|chr7:100057336-100057337|-/ATTGCAACCTCTGCCTCCCATGTTCA|frameshift_variant;ENSG00000166529|ENST00000292450|ZSCAN21	ZSCAN21|p.E111Ifs*100|1|0.28|ENSG00000166529|chr7:100057336-100057337|-/ATTGCAACCTCTGCCTCCCATGTTCA|frameshift_variant	ZSCAN21|p.E111Ifs*100|1|0.28|ENSG00000166529|chr7:100057336-100057337|-/ATTGCAACCTCTGCCTCCCATGTTCA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	464.29150390625	2	464.288431	926.562309	-0.52136	-0.00024206	4.3254	0.0020082	3.8041	0.0017662	464.2903804442876	70.348	1.2622	70.348	70.046	71.308	0					75	31	4	0	0	0	0.58665	1	6754	6754		33.516	4.366	1	16927000			26931	6689	22034	22062	30135	30135					0.09609080444522533
KVLHKVVLQTS	11	Unmodified	_KVLHKVVLQTS_					0	0	0			REV__tr|A0A553SU12|A0A553SU12_NIACIIsochorismatasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_06105PE=3SV=1	REV__tr|A0A553SU12|A0A553SU12_NIACIIsochorismatasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_06105PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	626.3909301757812	2	626.392805	1250.77106	-5.6586	-0.0035445	-3.473	-0.0021755	-9.1316	-0.00572	626.8920656002647	163.54	1.1058	163.31	162.97	164.08	-0.22697					56	36	2	0	0	0	0.72466	1	16684	16684		19.997	3.5236	1	65883	+		26932	31029	22035	22063	30136	30136					0.15570200282309088
KVLHNGKI	8	Unmodified	_KVLHNGKI_					0	0	0			REV__CD3G|p.R143Lfs*16|1|0.06|ENSG00000160654|chr11:118350671-118350672|-/TACA|frameshift_variant	REV__CD3G|p.R143Lfs*16|1|0.06|ENSG00000160654|chr11:118350671-118350672|-/TACA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	454.787353515625	2	454.787444	907.560336	-0.53136	-0.00024165	0.53955	0.00024538	0.0081897	3.7246E-06	454.78750280784647	26.117	0.39963	26.117	25.943	26.342	0					15	7	3	0	0	0	0.69415	1	654	654		44.531	3.9584	1	98758	+		26933	15761	22036	22064	30137	30137					0.1028578775093365
KVLIPVHLI	9	Unmodified	_KVLIPVHLI_					0	0	0		ENSG00000177150|ENST00000651643|FAM210A;ENST00000588475.1_1_18:13666687-13682076:-|nuORF	ENSG00000177150|ENST00000651643|FAM210A	ENSG00000177150|ENST00000651643|FAM210A	MULTI-MSMS	OvCa9_classI_Rep2	2	516.3527221679688	2	516.35242	1030.69029	-1.2427	-0.00064168	1.1474	0.00059244	-0.095354	-4.9236E-05	516.3528479748071	141.53	1.0414	141.3	140.92	141.97	-0.22696					40	20	3	0	0	0	0.6959	1	14184	14184		19.36	1.995	1	40535			26934	7662	22037	22065	30138	30138					0.17616964030071358
KVLIPVHLI	9	Unmodified	_KVLIPVHLI_					0	0	0		ENSG00000177150|ENST00000651643|FAM210A;ENST00000588475.1_1_18:13666687-13682076:-|nuORF	ENSG00000177150|ENST00000651643|FAM210A	ENSG00000177150|ENST00000651643|FAM210A	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.3530883789062	2	516.35242	1030.69029	-0.42341	-0.00021863	0.33536	0.00017317	-0.088051	-4.5465E-05	516.3524564445221	143.41	1.0818	141.97	141.55	142.63	-1.4427					41	20	3	0	0	0	0.58665	1	14060	14060		33.516	1.5607	1	70807			26935	7662	22037	22065	30139	30139					0.17616964030071358
KVLKIKNV	8	Unmodified	_KVLKIKNV_					0	0	0			REV__tr|A0A7D6VSB8|A0A7D6VSB8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15530PE=4SV=1	REV__tr|A0A7D6VSB8|A0A7D6VSB8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15530PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	472.2892150878906	2	471.328945	940.643337	-0.26714	-0.00012591	0.14041	6.6179E-05	-0.12673	-5.9729E-05	471.3289890558957	97.903	0.63299	96.959	96.775	97.408	-0.94355					17	12	2	0	0	0	0.028476	1	8927	8927		12.959	0	1	20340	+		26936	31485	22038	22066	30140	30140					0.17064104478924946
KVLKKHGKV	9	Unmodified	_KVLKKHGKV_					0	0	0			REV__tr|A0A553STH0|A0A553STH0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04830PE=4SV=1	REV__tr|A0A553STH0|A0A553STH0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04830PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.2969970703125	2	518.853119	1035.69168	1.3016	0.00067535	0.52752	0.00027371	1.8291	0.00094905	518.8532642265242	91.338	0.40424	91.338	91.098	91.502	0					16	9	2	0	0	0	0.027462	1	9832	9832		40.573	0	1	387370	+		26937	30960	22039	22067	30141	30141					0.1752659811884314
KVLLILNKL	9	Unmodified	_KVLLILNKL_					0	0	0			REV__ENSG00000111331|ENST00000228928|OAS3	REV__ENSG00000111331|ENST00000228928|OAS3	MULTI-SECPEP	OvCa9_classI_Rep3	3	527.35595703125	2	527.373352	1052.73215	-1.5746	-0.00083039	3.2814	0.0017305	1.7068	0.00090014	527.375036956665	84.777	0.58946	82.516	82.258	82.848	-2.261					16	11	2	0	0	0	0.027462	1	4949	4949		37.159	0	1	22661	+		26938	18027	22040	22068	30142	30142					0.2078951971859624
KVLLKRIF	8	Unmodified	_KVLLKRIF_					0	0	0			REV__ENST00000558076.1_1_15:64216999-64218270:-|nuORF	REV__ENST00000558076.1_1_15:64216999-64218270:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.8160705566406	2	508.852587	1015.69062	-0.20988	-0.0001068	-1.2179	-0.00061974	-1.4278	-0.00072654	508.85182321826255	75.995	0.28879	73.056	72.839	73.128	-2.9389					8	5	2	0	0	0	0.028476	1	6007	6007		13.775	0	1	30827	+		26939	16601	22041	22069	30143	30143					0.1834038374992133
KVLLPPAPW	9	Unmodified	_KVLLPPAPW_					0	0	0		ENST00000460614.1_1_9:139943111-139943842:-|nuORF	ENST00000460614.1_1_9:139943111-139943842:-|nuORF	ENST00000460614.1_1_9:139943111-139943842:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.2886047363281	2	510.81567	1019.61679	2.0551	0.0010498	-3.7438	-0.0019124	-1.6887	-0.00086263	510.8135668859566	77.51	0.42102	77.51	77.293	77.714	0					17	9	2	0	0	0	0.027462	1	7798	7798		33.516	16.151	1	845860			26940	12154	22042	22070	30144	30144					0.10776415587599786
KVLNAADPT	9	Unmodified	_KVLNAADPT_					0	0	0		ENST00000407450.1_1_6:118774123-118774444:-|nuORF	ENST00000407450.1_1_6:118774123-118774444:-|nuORF	ENST00000407450.1_1_6:118774123-118774444:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	464.76007080078125	2	464.758549	927.502546	-0.37967	-0.00017645	-0.022364	-1.0394E-05	-0.40203	-0.00018685	464.7586046781556	53.791	1.6311	53.791	53.519	55.15	0					100	38	5	0	0	0	0.074342	1	4312	4312		104.75	3.535	1	9336200			26941	11494	22043	22071	30145	30145					0.03589481034839537
KVLNRMINL	9	Unmodified	_KVLNRMINL_					0	0	0			REV__ENSG00000141560|ENST00000269373|FN3KRP	REV__ENSG00000141560|ENST00000269373|FN3KRP	MULTI-SECPEP	OvCa9_classI_Rep3	3	550.2811279296875	2	550.834069	1099.65358	-1.2554	-0.00069153	-2.3427	-0.0012904	-3.5981	-0.001982	550.8327148598817	94.103	1.4131	92.207	91.898	93.311	-1.8956					62	27	3	0	0	0	0.027462	1	6188	6188		45.952	29.479	1	177440	+		26942	19748	22044	22072	30146	30146					0.10774344141850634
KVLPIPVLSDN	11	Unmodified	_KVLPIPVLSDN_					0	0	0		nc|ENSG00000127838|Q8N490-4|PNKD;nc|ENSG00000127838|Q8N490-3|PNKD;ENSG00000127838|ENST00000273077|PNKD	nc|ENSG00000127838|Q8N490-4|PNKD	nc|ENSG00000127838|Q8N490-4|PNKD	MULTI-MSMS	OvCa9_classI_Rep2	2	597.85595703125	2	597.858264	1193.70197	-3.1766	-0.0018991	0.037639	2.2503E-05	-3.1389	-0.0018766	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.70142	1	15014	15014		29.17	4.6509	1	436470			26943	3849	22045	22073	30147	30147					0.11287116262769814
KVLPKQKILE	10	Unmodified	_KVLPKQKILE_					0	0	0			REV__tr|A0A7D6ZVX2|A0A7D6ZVX2_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15485PE=3SV=1	REV__tr|A0A7D6ZVX2|A0A7D6ZVX2_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15485PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	598.31640625	2	598.392273	1194.76999	-0.36099	-0.00021602	-2.0441	-0.0012232	-2.4051	-0.0014392	598.3916940555259	107.49	0.4336	107.18	106.97	107.4	-0.30836					17	8	3	0	0	0	0.026956	1	10059	10059		34.173	0.65696	1	24519	+		26944	32266	22046	22074	30148	30148					0.18039985913424061
KVLPPADCFF	10	Unmodified	_KVLPPADCFF_					0	0	0			REV__ENSG00000172457|ENST00000641668|OR9G4	REV__ENSG00000172457|ENST00000641668|OR9G4	MULTI-SECPEP	OvCa9_classI_Rep2	2	567.806396484375	2	568.794078	1135.5736	-1.387	-0.00078891	-3.0269	-0.0017217	-4.4139	-0.0025106	568.7921023004842	68.613	1.0924	65.993	65.573	66.665	-2.6203					33	21	2	0	0	0	0.026956	1	5463	5463		19.997	0	1	36735	+		26945	21699	22048	22075	30149	30149					0.011238577480071399
KVLQGIEAFE	10	Unmodified	_KVLQGIEAFE_					0	0	0			REV__tr|A0A553SI57|A0A553SI57_NIACIUVDNAdamageendonucleaseOS=NialliacirculansOX=1397GN=uvsEPE=3SV=1	REV__tr|A0A553SI57|A0A553SI57_NIACIUVDNAdamageendonucleaseOS=NialliacirculansOX=1397GN=uvsEPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3154907226562	2	567.313689	1132.61282	2.0704	0.0011746	0.77426	0.00043925	2.8447	0.0016138	567.3139739099872	57.536	1.95	54.41	53.788	55.738	-3.1264					89	52	3	0	0	0	0.75313	1	1761	1761		24.519	1.9395	1	66904	+		26946	29864	22049	22076	30150	30150					0.05182281303223135
KVLQILFV	8	Unmodified	_KVLQILFV_					0	0	0			REV__nc|ENSG00000211806|A0A0B4J276|TRAV25	REV__nc|ENSG00000211806|A0A0B4J276|TRAV25	MULTI-MSMS	OvCa99_classI_Rep5	1	480.31805419921875	2	480.318046	958.621539	1.8034	0.00086621	-0.10606	-5.0943E-05	1.6974	0.00081527	480.3178828185007	129.65	0.70277	129.65	129.45	130.15	0					27	14	3	0	0	0	0.7043	1	15030	15030		42.474	1.9018	1	225300	+		26947	29119	22050	22077	30151	30151					0.14057299730382056
KVLQILFV	8	Unmodified	_KVLQILFV_					0	0	0			REV__nc|ENSG00000211806|A0A0B4J276|TRAV25	REV__nc|ENSG00000211806|A0A0B4J276|TRAV25	MULTI-MSMS	OvCa9_classI_Rep2	2	480.31787109375	2	480.318046	958.621539	0.60293	0.0002896	-0.4826	-0.0002318	0.12033	5.7799E-05	480.3176337071437	130.34	1.4398	130.11	129.86	131.3	-0.22697					62	28	4	0	0	0	0.62934	1	12821	12821		57.811	7.7867	1	107540	+		26948	29119	22050	22077	30152	30152					0.14057299730382056
KVLQILFV	8	Unmodified	_KVLQILFV_					0	0	0			REV__nc|ENSG00000211806|A0A0B4J276|TRAV25	REV__nc|ENSG00000211806|A0A0B4J276|TRAV25	MULTI-MSMS	OvCa9_classI_Rep3	3	480.3177185058594	2	480.318046	958.621539	0.28938	0.000139	-0.33238	-0.00015965	-0.042999	-2.0653E-05	480.317700980333	131.71	1.0449	130.58	130.29	131.34	-1.1249					43	20	3	0	0	0	0.73288	2	10524	10506;10524		35.201	1.6851	1	66984	+		26949	29119	22050	22077	30153;30154	30154					0.14057299730382056
KVLQILFV	8	Unmodified	_KVLQILFV_					0	0	0			REV__nc|ENSG00000211806|A0A0B4J276|TRAV25	REV__nc|ENSG00000211806|A0A0B4J276|TRAV25	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.3188171386719	2	480.318046	958.621539	4.0104	0.0019263	-4.1147	-0.0019764	-0.10425	-5.0071E-05	480.3158855709112	132.07	1.2133	130.57	130.27	131.48	-1.5014					57	23	4	0	0	0	0.73938	2	12694	12694;12714		31.955	6.5047	1	95732	+		26950	29119	22050	22077	30155;30156	30155					0.14057299730382056
KVLQILFV	8	Unmodified	_KVLQILFV_					0	0	0			REV__nc|ENSG00000211806|A0A0B4J276|TRAV25	REV__nc|ENSG00000211806|A0A0B4J276|TRAV25	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	480.318046	958.621539	1.8034	0.00086621	-0.10606	-5.0943E-05	1.6974	0.00081527	480.3178828185007	129.65	0.70277	129.65	129.45	130.15	0	0	0	NaN	42.474	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225300	+		26951	29119	22050	22077							0.14057299730382056
KVLRARDDL	9	Unmodified	_KVLRARDDL_					0	0	0		ENST00000439215.1_1_1:43369124-43369580:+|nuORF;ENST00000481365.5_1_22:18080958-18102283:-|nuORF;nc|ENSG00000131100|P36543-2|ATP6V1E1;ENSG00000131100|ENST00000253413|ATP6V1E1;ENST00000484653.5_1_22:18083848-18102283:-|nuORF;nc|ENSG00000131100|P36543-3|ATP6V1E1;ENST00000478963.5_1_22:18095568-18111476:-|nuORF	ENST00000439215.1_1_1:43369124-43369580:+|nuORF	ENST00000439215.1_1_1:43369124-43369580:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	543.8088989257812	2	543.324922	1084.63529	0.48781	0.00026504	2.7117	0.0014733	3.1995	0.0017384	543.3262546884762	114.06	0.91981	113.01	112.63	113.55	-1.055					39	17	3	0	0	0	0.027164	1	8443	8443		68.787	0	1	81449			26952	4044	22051	22078	30157	30157					0.09635925491488706
KVLRGIFTI	9	Unmodified	_KVLRGIFTI_					0	0	0			REV__tr|A0A553SH18|A0A553SH18_NIACIGlycosyltransferasefamily4proteinOS=NialliacirculansOX=1397GN=CEQ21_11945PE=4SV=1	REV__tr|A0A553SH18|A0A553SH18_NIACIGlycosyltransferasefamily4proteinOS=NialliacirculansOX=1397GN=CEQ21_11945PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.8405151367188	2	523.839677	1045.6648	-0.84837	-0.00044441	0.57936	0.00030349	-0.26901	-0.00014092	523.8398892974864	103.3	2.59	101.1	100.67	103.26	-2.1994					128	49	4	0	0	0	0.35444	2	9365	9365;9383		56.721	3.4896	1	841680	+		26953	29765	22052	22079	30158;30159	30158					0.14379489507678045
KVLRKAPNAI	10	Unmodified	_KVLRKAPNAI_					0	0	0		tr|A0A7D7A069|A0A7D7A069_9CLOTArginine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=argSPE=3SV=1	tr|A0A7D7A069|A0A7D7A069_9CLOTArginine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=argSPE=3SV=1	tr|A0A7D7A069|A0A7D7A069_9CLOTArginine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=argSPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	555.362060546875	2	555.361308	1108.70806	2.5839	0.001435	-0.93614	-0.00051989	1.6477	0.00091508	555.3606483139098	75.978	2.0338	75.978	75.723	77.757	0					96	49	4	0	0	0	0.59703	1	7608	7608		42.396	5.9494	1	8395400			26954	35987	22053	22080	30160	30160					0.15805679284926555
KVLRNPKSN	9	Unmodified	_KVLRNPKSN_					0	0	0		ENST00000412707.1_1_17:69617202-69617574:+|nuORF	ENST00000412707.1_1_17:69617202-69617574:+|nuORF	ENST00000412707.1_1_17:69617202-69617574:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	528.3192749023438	2	528.31964	1054.62473	-1.2877	-0.00068031	1.0635	0.00056189	-0.22415	-0.00011842	528.3201028484496	56.253	2.2315	53.449	52.879	55.11	-2.804					126	44	4	0	0	0	0.61365	1	3984	3984		30.318	2.4355	1	541320			26955	11551	22054	22081	30161	30161					0.09959942837076596
KVLRSIVGI	9	Unmodified	_KVLRSIVGI_					0	0	0		ENSG00000186918|ENST00000344423|ZNF395	ENSG00000186918|ENST00000344423|ZNF395	ENSG00000186918|ENST00000344423|ZNF395	MULTI-MSMS	OvCa99_classI_Rep5	1	492.8319091796875	2	492.831852	983.649151	2.416	0.0011907	-0.36839	-0.00018156	2.0476	0.0010091	492.83155886579794	75.542	0.63576	75.542	75.087	75.723	0					34	15	3	0	0	0	0.40818	1	7531	7531		51.193	3.2771	1	914340			26956	8374	22055	22082	30162	30162					0.1566720299060762
KVLSKEFHL	9	Unmodified	_KVLSKEFHL_					0	0	0		nc|ENSG00000119335|Q01105-3|SET;nc|ENSG00000119335|Q01105-4|SET;ENSG00000119335|ENST00000322030|SET;nc|ENSG00000119335|Q01105|SET	nc|ENSG00000119335|Q01105-3|SET	nc|ENSG00000119335|Q01105-3|SET	MULTI-MSMS	OvCa99_classI_Rep5	1	550.8276977539062	2	550.826766	1099.63898	-0.25821	-0.00014223	-0.40373	-0.00022239	-0.66195	-0.00036462	550.8263745637471	60.986	0.51734	60.986	60.772	61.289	0					31	11	3	0	0	0	0.37135	1	5353	5353		54.776	0	1	1242600			26957	3356	22056	22083	30163	30163					0.09314595265368553
KVLSLGLVGF	10	Unmodified	_KVLSLGLVGF_					0	0	0			REV__tr|A0A553SHD0|A0A553SHD0_NIACICysteine--tRNAligaseOS=NialliacirculansOX=1397GN=cysSPE=3SV=1	REV__tr|A0A553SHD0|A0A553SHD0_NIACICysteine--tRNAligaseOS=NialliacirculansOX=1397GN=cysSPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.8287963867188	2	516.826235	1031.63792	1.8469	0.0009545	-1.0745	-0.00055535	0.77231	0.00039915	516.8254524192696	91.545	1.7151	91.545	91.296	93.011	0					83	40	3	0	0	0	0.46756	1	9883	9883		58.782	0.55203	1	778440	+		26958	29791	22057	22084	30164	30164					0.12336380896454102
KVLSTLEKL	9	Unmodified	_KVLSTLEKL_					0	0	0			REV__ENST00000434334.1_1_2:182559249-182559624:+|nuORF	REV__ENST00000434334.1_1_2:182559249-182559624:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2845458984375	2	515.828975	1029.6434	-0.12488	-6.4415E-05	-0.0011421	-5.8914E-07	-0.12602	-6.5004E-05	515.8288744311794	71.729	0.90448	71.729	71.507	72.412	0					50	21	4	0	0	0	0.027425	1	6944	6944		46.457	10.01	1	3726600	+		26959	20189	22058	22085	30165	30165					0.1297605968827611
KVLSWAARSP	10	Unmodified	_KVLSWAARSP_					0	0	0			REV__ENST00000369244.6_1_6:99382683-99395786:-|nuORF	REV__ENST00000369244.6_1_6:99382683-99395786:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.8031616210938	2	557.822015	1113.62948	-0.15673	-8.7427E-05	-3.4644	-0.0019325	-3.6211	-0.0020199	557.8208061293109	33.705	0.24157	33.705	33.583	33.824	0					6	4	2	0	0	0	0.026659	1	1558	1558		30.318	9.3708	1	41427	+		26960	24936	22059	22086	30166	30166					0.0772082697985752
KVLSYISVR	9	Unmodified	_KVLSYISVR_					0	0	0		SLC7A9|p.V425Ffs*21|1|0.07|ENSG00000021488|chr19:32833275-32833275|C/-|frameshift_variant;ENSG00000021488|ENST00000023064|SLC7A9	SLC7A9|p.V425Ffs*21|1|0.07|ENSG00000021488|chr19:32833275-32833275|C/-|frameshift_variant	SLC7A9|p.V425Ffs*21|1|0.07|ENSG00000021488|chr19:32833275-32833275|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.809326171875	2	532.826766	1063.63898	-1.1818	-0.00062969	3.2443	0.0017287	2.0626	0.001099	532.8285528262421	77.714	0.5819	74.897	74.632	75.214	-2.8165					20	11	2	0	0	0	0.02715	1	6211	6211		80.455	3.6805	1	30134			26961	1025	22060	22087	30167	30167					0.1097059526537123
KVLTANHVM	9	Unmodified	_KVLTANHVM_					0	0	0		tr|A0A553SPK6|A0A553SPK6_NIACIQuaternaryaminetransportATP-bindingproteinOS=NialliacirculansOX=1397GN=proVPE=3SV=1	tr|A0A553SPK6|A0A553SPK6_NIACIQuaternaryaminetransportATP-bindingproteinOS=NialliacirculansOX=1397GN=proVPE=3SV=1	tr|A0A553SPK6|A0A553SPK6_NIACIQuaternaryaminetransportATP-bindingproteinOS=NialliacirculansOX=1397GN=proVPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3087158203125	2	506.784044	1011.55354	-0.58705	-0.00029751	0.16745	8.486E-05	-0.4196	-0.00021265	506.7839727226201	48.349	0.35779	45.242	44.938	45.296	-3.1077					9	6	2	0	0	0	0.02741	1	2648	2648		42.396	0	1	14238			26962	34055	22061	22088	30168	30168					0.048221068080579244
KVLTKEVEL	9	Unmodified	_KVLTKEVEL_					0	0	0		ENST00000549935.6_1_12:54107863-54119026:-|nuORF;nc|ENSG00000012822|Q9P1Z2-4|CALCOCO1;nc|ENSG00000012822|Q9P1Z2-2|CALCOCO1;nc|ENSG00000012822|Q9P1Z2-3|CALCOCO1;ENSG00000012822|ENST00000550804|CALCOCO1	ENST00000549935.6_1_12:54107863-54119026:-|nuORF	ENST00000549935.6_1_12:54107863-54119026:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	529.8269653320312	2	529.826432	1057.63831	0.33473	0.00017735	-0.56759	-0.00030072	-0.23286	-0.00012337	529.8260452845803	71.977	1.2452	71.977	71.749	72.994	0					60	30	4	0	0	0	0.094616	1	6977	6977		98.629	2.8142	1	13247000			26963	977	22062	22089	30169	30169					0.11179755825651227
KVLTQSLRA	9	Unmodified	_KVLTQSLRA_					0	0	0			REV__nc|ENSG00000099814|Q9Y4F5-3|CEP170B	REV__nc|ENSG00000099814|Q9Y4F5-3|CEP170B	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.31768798828125	2	508.316566	1014.61858	-0.71229	-0.00036207	0.75997	0.00038631	0.047685	2.4239E-05	508.3167665349076	55.836	1.5724	52.541	52.361	53.934	-3.2944					67	30	3	0	0	0	0.3249	1	3545	3545		60.118	3.3972	1	377950	+		26964	17335	22063	22090	30170	30170					0.11185424605560002
KVLTQSLRA	9	Unmodified	_KVLTQSLRA_					0	0	0			REV__nc|ENSG00000099814|Q9Y4F5-3|CEP170B	REV__nc|ENSG00000099814|Q9Y4F5-3|CEP170B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	508.316566	1014.61858	-1.2179	-0.00061909	1.3687	0.00069576	0.15081	7.6661E-05	508.31712866111417	55.334	1.4421	52.52	51.972	53.414	-2.8139	-0.010839	0.00028161	NaN	60.118	67	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149070	+		26965	17335	22063	22090							0.11185424605560002
KVLTQSLRA	9	Unmodified	_KVLTQSLRA_					0	0	0			REV__nc|ENSG00000099814|Q9Y4F5-3|CEP170B	REV__nc|ENSG00000099814|Q9Y4F5-3|CEP170B	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	508.316566	1014.61858	-0.71229	-0.00036207	0.75997	0.00038631	0.047685	2.4239E-05	508.3167665349076	55.836	1.5724	52.541	52.361	53.934	-3.2944	0.010839	-0.00033729	NaN	60.118	67	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	377950	+		26966	17335	22063	22090							0.11185424605560002
KVLVDFFF	8	Unmodified	_KVLVDFFF_					0	0	0			REV__DOCK9|p.I967V|1|0.05|ENSG00000088387|chr13:98879942-98879942|T/C|missense_variant	REV__DOCK9|p.I967V|1|0.05|ENSG00000088387|chr13:98879942-98879942|T/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7892761230469	2	507.786579	1013.5586	-0.34924	-0.00017734	2.695	0.0013685	2.3458	0.0011912	507.78796796196445	47.165	1.8311	44.093	43.604	45.435	-3.0724					104	35	4	0	0	0	0.73288	1	2509	2509		35.201	2.3883	1	3261100	+		26967	16333	22064	22091	30171	30171					0.05236733942331284
KVLVDMSRV	9	Unmodified	_KVLVDMSRV_					0	0	0		nc|ENSG00000166226|P78371-2|CCT2;ENSG00000166226|ENST00000299300|CCT2;ENST00000546859.5_1_12:69979244-69981900:+|nuORF;ENST00000550638.5_1_12:69979244-69982049:+|nuORF;ENST00000551620.5_1_12:69979244-69983508:+|nuORF	nc|ENSG00000166226|P78371-2|CCT2	nc|ENSG00000166226|P78371-2|CCT2	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.8410034179688	2	523.804977	1045.5954	2.4892	0.0013039	-1.3615	-0.00071315	1.1278	0.00059072	523.8045628980296	99.105	0.49165	99.105	98.955	99.447	0					29	11	4	0	0	0	0.027185	1	10972	10972		93.195	0	1	1319700			26968	6655	22065	22092	30172	30172					0.07442662496578123
KVLYVGRAQ	9	Unmodified	_KVLYVGRAQ_					0	0	0		nc|ENSG00000174740|Q96DU9-2|PABPC5;ENSG00000174740|ENST00000312600|PABPC5	nc|ENSG00000174740|Q96DU9-2|PABPC5	nc|ENSG00000174740|Q96DU9-2|PABPC5	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3113403320312	2	517.311284	1032.60801	0.010128	5.2392E-06	-0.21635	-0.00011192	-0.20622	-0.00010668	517.3110169376656	31.938	1.2365	29.228	28.986	30.222	-2.7097					60	24	4	0	0	0	0.29717	1	1011	1011		63.306	6.5852	1	305470			26969	7486	22066	22093	30173	30173					0.09301441951129163
KVMAELEEN	9	Unmodified	_KVMAELEEN_					0	0	0			REV__MYL10|p.F163Sfs*22|1|0.12|ENSG00000106436|chr7:101616267-101616267|G/-|frameshift_variant	REV__MYL10|p.F163Sfs*22|1|0.12|ENSG00000106436|chr7:101616267-101616267|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	531.8434448242188	2	531.760432	1061.50631	-0.50445	-0.00026825	-1.7831	-0.00094818	-2.2875	-0.0012164	531.7591482027054	87.66	0.30933	85.483	85.293	85.602	-2.1768					6	5	2	0	0	0	0.027438	1	5281	5281		32.751	0	1	12319	+		26970	17802	22067	22094	30174	30174					-0.021982172535899736
KVMAYIGV	8	Unmodified	_KVMAYIGV_					0	0	0			REV__nc|ENSG00000150967|Q9NP78-3|ABCB9	REV__nc|ENSG00000150967|Q9NP78-3|ABCB9	MULTI-SECPEP	OvCa9_classI_Rep2	2	439.84881591796875	2	440.751682	879.48881	2.2155	0.00097648	2.1257	0.00093692	4.3412	0.0019134	440.7524869532	41.812	0.83835	39.103	38.881	39.72	-2.7097					34	16	3	0	0	0	0.028476	1	2245	2245		13.775	0	1	84795	+		26971	20208	22068	22095	30175	30175					0.044245320020763756
KVMFIEQQI	9	Unmodified	_KVMFIEQQI_					0	0	0			REV__ENSG00000012983|ENST00000682126|MAP4K5	REV__ENSG00000012983|ENST00000682126|MAP4K5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.7864379882812	2	568.312635	1134.61072	0.014543	8.2647E-06	2.7335	0.0015535	2.748	0.0015617	568.3138284262799	63.376	0.43373	59.901	59.723	60.156	-3.475					15	8	3	0	0	0	0.027462	1	4466	4466		42.396	15.703	1	57616	+		26972	16502	22069	22096	30176	30176					0.048795292937711565
KVMHILAVL	9	Unmodified	_KVMHILAVL_					0	0	0			REV__ENST00000494880.5_1_1:185269193-185269247:-|nuORF	REV__ENST00000494880.5_1_1:185269193-185269247:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.279052734375	2	512.322805	1022.63106	1.5343	0.00078606	-2.0638	-0.0010573	-0.52944	-0.00027125	512.3226634720901	98.201	0.46471	98.201	97.954	98.419	0					16	10	2	0	0	0	0.027462	1	10835	10835		18.324	0	1	249470	+		26973	26735	22070	22097	30177	30177					0.12064744744259315
KVMKAQQV	8	Unmodified	_KVMKAQQV_					0	0	0		ENSG00000104442|ENST00000276569|ARMC1;nc|ENSG00000104442|Q9NVT9-2|ARMC1	ENSG00000104442|ENST00000276569|ARMC1	ENSG00000104442|ENST00000276569|ARMC1	MULTI-MSMS	OvCa99_classI_Rep5	1	466.27325439453125	2	466.273312	930.532072	0.054004	2.5181E-05	-0.18803	-8.7675E-05	-0.13403	-6.2495E-05	466.27310657758187	30.856	0.5389	30.856	30.632	31.171	0					25	10	4	0	0	0	0.2589	1	1224	1224		114.59	31.299	1	414580			26974	2377	22071	22098	30178	30178					0.06402721779340936
KVMKAQQVV	9	Unmodified	_KVMKAQQVV_					0	0	0		ENSG00000104442|ENST00000276569|ARMC1;nc|ENSG00000104442|Q9NVT9-2|ARMC1	ENSG00000104442|ENST00000276569|ARMC1	ENSG00000104442|ENST00000276569|ARMC1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.8078002929688	2	515.807519	1029.60049	-0.80479	-0.00041512	0.66756	0.00034433	-0.13723	-7.0784E-05	515.8078343953733	39.486	0.42454	39.486	39.332	39.756	0					21	9	4	0	0	0	0.079296	1	2327	2327		102.77	39.467	1	1013100			26975	2377	22072	22099	30179	30179					0.08686966359186954
KVMKLENE	8	Unmodified	_KVMKLENE_					0	0	0		ENSG00000198707|ENST00000552810|CEP290	ENSG00000198707|ENST00000552810|CEP290	ENSG00000198707|ENST00000552810|CEP290	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.7628479003906	2	495.76806	989.521567	0.015771	7.8187E-06	-0.49108	-0.00024346	-0.47531	-0.00023564	495.76756227806743	75.135	0.57635	71.905	71.629	72.205	-3.2308					16	11	2	0	0	0	0.028476	1	5875	5875		51.335	0	1	41058			26976	8851	22073	22100	30180	30180					0.026386943342572522
KVMLRIWP	8	Unmodified	_KVMLRIWP_					0	0	0		ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.8145141601562	2	521.815147	1041.61574	-0.59232	-0.00030908	-3.8798	-0.0020246	-4.4722	-0.0023336	521.8131591315095	68.904	2.2928	65.414	65.113	67.406	-3.4902					139	46	6	0	0	0	0.73288	2	5198	5162;5198		35.201	3.2459	1	4748000			26977	1358	22074	22101	30181;30182	30182					0.0965987794704688
KVMPLLQIF	9	Unmodified	_KVMPLLQIF_					0	0	0		nc|ENSG00000109680|Q8N5T2-2|TBC1D19;ENSG00000109680|ENST00000264866|TBC1D19	nc|ENSG00000109680|Q8N5T2-2|TBC1D19	nc|ENSG00000109680|Q8N5T2-2|TBC1D19	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.7913818359375	2	544.830463	1087.64637	-1.3376	-0.00072879	-3.6813	-0.0020057	-5.0189	-0.0027345	544.8276833042415	92.526	1.0096	89.983	89.669	90.678	-2.5425					29	19	2	0	0	0	0.027462	1	8025	8025		30.504	8.5438	1	119240			26978	2725	22075	22102	30183	30183					0.10605611541427606
KVMPLLQIF	9	Unmodified	_KVMPLLQIF_					0	0	0		nc|ENSG00000109680|Q8N5T2-2|TBC1D19;ENSG00000109680|ENST00000264866|TBC1D19	nc|ENSG00000109680|Q8N5T2-2|TBC1D19	nc|ENSG00000109680|Q8N5T2-2|TBC1D19	MULTI-MATCH	OvCa9_classI_Rep2	2		2	544.830463	1087.64637	0.94474	0.00051472	-3.3429	-0.0018213	-2.3982	-0.0013066	544.8271123532325	91.305	1.0053	90.069	89.689	90.694	-1.2355	0.042768	0.00020079	NaN	30.504	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67566			26979	2725	22075	22102							0.10605611541427606
KVMWMKSVNS	10	Unmodified	_KVMWMKSVNS_					0	0	0		DNAH11|p.E683Kfs*20|1|0.17|ENSG00000105877|chr7:21589281-21589281|G/-|frameshift_variant	DNAH11|p.E683Kfs*20|1|0.17|ENSG00000105877|chr7:21589281-21589281|G/-|frameshift_variant	DNAH11|p.E683Kfs*20|1|0.17|ENSG00000105877|chr7:21589281-21589281|G/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	403.88800048828125	3	403.875471	1208.60458	1.3901	0.00056143	1.1556	0.00046671	2.5457	0.0010281	404.2112911657282	31.863	0.24836	31.863	31.757	32.006	0					5	4	2	0	0	0	0.026942	1	1343	1343		26.063	0	1	6947.2			26980	746	22076	22103	30184	30184					0.008626877906181107
KVNATKLRI	9	Unmodified	_KVNATKLRI_					0	0	0		tr|A0A553SM75|A0A553SM75_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21975PE=4SV=1	tr|A0A553SM75|A0A553SM75_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21975PE=4SV=1	tr|A0A553SM75|A0A553SM75_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21975PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.8157958984375	2	521.840208	1041.66586	0.84071	0.00043872	-1.1383	-0.000594	-0.29758	-0.00015529	521.8394324796321	30.72	0.59122	28.011	27.853	28.445	-2.7097					19	11	2	0	0	0	0.027462	1	873	873		45.972	15.655	1	23187			26981	33808	22077	22104	30185	30185					0.14669703876552376
KVNDAPCLYL	10	Unmodified	_KVNDAPCLYL_					0	0	0			REV__ENST00000482209.1_1_12:6978793-6979262:+|nuORF	REV__ENST00000482209.1_1_12:6978793-6979262:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.8255004882812	2	568.294442	1134.57433	1.3617	0.00077383	-4.1577	-0.0023628	-2.796	-0.001589	568.2925863282671	79.167	0.39687	79.167	78.955	79.352	0					16	9	2	0	0	0	0.026782	1	8035	8035		54.776	20.604	1	557810	+		26982	26496	22078	22105	30186	30186					0.012426523970589187
KVNDAPCLYL	10	Unmodified	_KVNDAPCLYL_					0	0	0			REV__ENST00000482209.1_1_12:6978793-6979262:+|nuORF	REV__ENST00000482209.1_1_12:6978793-6979262:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	568.294442	1134.57433	0.035062	1.9926E-05	-6.5877	-0.0037438	-6.5527	-0.0037238	568.2908322033392	80.77	1.0491	79.075	78.519	79.568	-1.6951	0.17983	-0.00014005	NaN	62.107	24	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11903	+		26983	26496	22078	22105							0.012426523970589187
KVNDAPCLYL	10	Unmodified	_KVNDAPCLYL_					0	0	0			REV__ENST00000482209.1_1_12:6978793-6979262:+|nuORF	REV__ENST00000482209.1_1_12:6978793-6979262:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	568.294442	1134.57433	-0.49201	-0.0002796	-6.2333	-0.0035424	-6.7254	-0.003822	568.2906892339365	81.045	0.76609	78.722	78.44	79.206	-2.3226	-0.17278	0.00026275	NaN	62.107	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49545	+		26984	26496	22078	22105							0.012426523970589187
KVNDAPCLYL	10	Unmodified	_KVNDAPCLYL_					0	0	0			REV__ENST00000482209.1_1_12:6978793-6979262:+|nuORF	REV__ENST00000482209.1_1_12:6978793-6979262:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	568.294442	1134.57433	-0.28235	-0.00016046	-6.9818	-0.0039677	-7.2642	-0.0041282	568.2902023311566	81.326	0.58923	78.616	78.396	78.985	-2.7106	-0.27903	-0.00058797	NaN	62.107	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48676	+		26985	26496	22078	22105							0.012426523970589187
KVNDLALKL	9	Unmodified	_KVNDLALKL_					0	0	0			REV__tr|A0A553SRZ7|A0A553SRZ7_NIACIRidAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_02125PE=4SV=1	REV__tr|A0A553SRZ7|A0A553SRZ7_NIACIRidAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_02125PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	507.322998046875	2	507.321317	1012.62808	2.2284	0.0011305	-0.44012	-0.00022328	1.7883	0.00090724	507.321082159916	120.64	0.38446	120.64	120.4	120.78	0					12	8	2	0	0	0	0.48324	1	13870	13870		44.117	1.7207	1	304270	+		26986	30782	22079	22106	30187	30187					0.1222719289107772
KVNDLALKL	9	Unmodified	_KVNDLALKL_					0	0	0			REV__tr|A0A553SRZ7|A0A553SRZ7_NIACIRidAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_02125PE=4SV=1	REV__tr|A0A553SRZ7|A0A553SRZ7_NIACIRidAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_02125PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	507.321317	1012.62808	2.2284	0.0011305	-0.44012	-0.00022328	1.7883	0.00090724	507.321082159916	120.64	0.38446	120.64	120.4	120.78	0	0	0	NaN	44.117	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	304270	+		26987	30782	22079	22106							0.1222719289107772
KVNGDKGVLL	10	Unmodified	_KVNGDKGVLL_					0	0	0			REV__nc|ENSG00000091986|Q76M96-2|CCDC80	REV__nc|ENSG00000091986|Q76M96-2|CCDC80	MULTI-MSMS	OvCa9_classI_Rep2	2	521.8157958984375	2	521.816399	1041.61824	0.79827	0.00041655	-3.2909	-0.0017172	-2.4926	-0.0013007	521.8145751675044	30.789	0.8863	28.08	27.903	28.789	-2.7097					32	17	3	0	0	0	0.5635	1	873	873		46.457	0.48454	1	123530	+		26988	17259	22080	22107	30188	30188					0.09910004885728085
KVNGGLLV	8	Unmodified	_KVNGGLLV_					0	0	0		tr|A0A7D6ZEZ6|A0A7D6ZEZ6_9CLOTGer(X)CfamilysporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15795PE=3SV=1	tr|A0A7D6ZEZ6|A0A7D6ZEZ6_9CLOTGer(X)CfamilysporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15795PE=3SV=1	tr|A0A7D6ZEZ6|A0A7D6ZEZ6_9CLOTGer(X)CfamilysporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15795PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	400.25640869140625	2	400.255446	798.496338	3.2316	0.0012935	-0.57686	-0.00023089	2.6547	0.0010626	400.25511225610796	125.92	0.65562	125.92	125.67	126.32	0					22	13	2	0	0	0	0.61758	1	14555	14555		60.294	10.269	1	202900			26989	35494	22081	22108	30189	30189					0.08903007593994516
KVNIVPVIAK	10	Unmodified	_KVNIVPVIAK_					0	0	0		ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2	ENSG00000168385|ENST00000391971|SEPTIN2	ENSG00000168385|ENST00000391971|SEPTIN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.861572265625	2	540.860609	1079.70667	-1.0558	-0.00057104	0.52236	0.00028252	-0.53344	-0.00028852	540.8607209706881	76.841	1.396	73.902	73.598	74.994	-2.9389					66	28	4	0	0	0	0.28845	2	6122	6122;6136		82.241	25.018	1	762290			26990	6897	22082	22109	30190;30191	30190					0.17000045196164137
KVNIVPVIAK	10	Unmodified	_KVNIVPVIAK_					0	0	0		ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2	ENSG00000168385|ENST00000391971|SEPTIN2	ENSG00000168385|ENST00000391971|SEPTIN2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	540.860609	1079.70667	-1.2228	-0.00066139	0.46156	0.00024964	-0.76129	-0.00041175	540.8607412729303	75.767	1.9197	73.913	73.638	75.558	-1.854	0.10442	0.00050505	NaN	82.241	78	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	556580			26991	6897	22082	22109							0.17000045196164137
KVNIVPVIAK	10	Unmodified	_KVNIVPVIAK_					0	0	0		ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2	ENSG00000168385|ENST00000391971|SEPTIN2	ENSG00000168385|ENST00000391971|SEPTIN2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	540.860609	1079.70667	-0.14311	-7.7401E-05	-0.22445	-0.0001214	-0.36756	-0.0001988	540.8603706604204	75.982	1.7616	73.611	73.267	75.028	-2.3715	-0.19758	-0.00023702	NaN	82.241	88	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	836690			26992	6897	22082	22109							0.17000045196164137
KVNKNKNSI	9	Unmodified	_KVNKNKNSI_					0	0	0		ENSG00000187091|ENST00000334661|PLCD1;nc|ENSG00000187091|P51178-2|PLCD1;ENST00000461445.5_1_3:38049266-38050137:-|nuORF	ENSG00000187091|ENST00000334661|PLCD1	ENSG00000187091|ENST00000334661|PLCD1	MULTI-MSMS	OvCa99_classI_Rep5	1	522.8118286132812	2	522.811648	1043.60874	-1.0446	-0.00054611	0.83263	0.00043531	-0.21193	-0.0001108	522.8119901844366	25.414	1.1018	25.414	24.99	26.092	0					52	21	4	0	0	0	0.28934	1	532	532		64.207	2.516	1	970860			26993	8385	22083	22110	30192	30192					0.08868236600187629
KVNKRKSPP	9	Unmodified	_KVNKRKSPP_					0	0	0		nc|ENSG00000167525|Q8NCQ7-2|PROCA1;nc|ENSG00000167525|Q8NCQ7-3|PROCA1;nc|ENSG00000167525|Q8NCQ7|PROCA1;ENSG00000167525|ENST00000682792|PROCA1	nc|ENSG00000167525|Q8NCQ7-2|PROCA1	nc|ENSG00000167525|Q8NCQ7-2|PROCA1	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.290771484375	2	527.330008	1052.64546	0.26791	0.00014128	2.4211	0.0012767	2.689	0.001418	527.3312193069333	119.76	0.78754	118.74	118.48	119.27	-1.0271					27	15	2	0	0	0	0.027433	1	9133	9133		42.396	0	1	37179			26994	6797	22084	22111	30193	30193					0.12124533216751843
KVNLNIFLL	9	Unmodified	_KVNLNIFLL_					0	0	0		nc|ENSG00000007062|O43490-5|PROM1;nc|ENSG00000007062|O43490-3|PROM1;nc|ENSG00000007062|O43490-4|PROM1;nc|ENSG00000007062|O43490-6|PROM1;nc|ENSG00000007062|O43490-7|PROM1;nc|ENSG00000007062|O43490-2|PROM1;ENSG00000007062|ENST00000447510|PROM1	nc|ENSG00000007062|O43490-5|PROM1	nc|ENSG00000007062|O43490-5|PROM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.7744750976562	2	537.33951	1072.66447	1.7498	0.00094025	0.86882	0.00046685	2.6187	0.0014071	537.3386091916536	92.294	1.0921	92.294	91.502	92.594	0					38	25	3	0	0	0	0.027462	1	10007	10007		24.203	7.7296	1	177350			26995	893	22085	22112	30194	30194					0.13104069787800654
KVNLTDASF	9	Unmodified	_KVNLTDASF_					0	0	0		tr|A0A7D6VPU8|A0A7D6VPU8_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20450PE=4SV=1	tr|A0A7D6VPU8|A0A7D6VPU8_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20450PE=4SV=1	tr|A0A7D6VPU8|A0A7D6VPU8_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20450PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.7577819824219	2	497.763832	993.513111	0.19156	9.535E-05	-3.1442	-0.0015651	-2.9526	-0.0014697	497.761792825828	79.293	1.9215	77.553	76.951	78.873	-1.7398					53	37	2	0	0	0	0.027462	1	6623	6623		29.15	0	1	56294			26996	34800	22086	22113	30195	30195					0.01609463689283075
KVNNIPGLL	9	Unmodified	_KVNNIPGLL_					0	0	0			REV__tr|A0A7D6ZZS4|A0A7D6ZZS4_9CLOTBifunctional4-hydroxy-2-oxoglutaratealdolase/2-dehydro-3-deoxy-phosphogluconatealdolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07270PE=3SV=1	REV__tr|A0A7D6ZZS4|A0A7D6ZZS4_9CLOTBifunctional4-hydroxy-2-oxoglutaratealdolase/2-dehydro-3-deoxy-phosphogluconatealdolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07270PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.7682800292969	2	484.300384	966.586216	1.96	0.00094924	0.24796	0.00012009	2.208	0.0010693	484.3004581507507	91.408	0.81554	91.408	90.938	91.753	0					32	19	3	0	0	0	0.027462	1	9817	9817		24.203	0	1	630550	+		26997	32420	22087	22114	30196	30196					0.10158637202562204
KVNQAFETL	9	Unmodified	_KVNQAFETL_					0	0	0		ENSG00000111049|ENST00000228644|MYF5	ENSG00000111049|ENST00000228644|MYF5	ENSG00000111049|ENST00000228644|MYF5	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.8070068359375	2	525.284931	1048.55531	1.7788	0.00093437	-1.7634	-0.00092627	0.015408	8.0938E-06	525.284016817391	100.34	0.63327	100.34	99.896	100.53	0					16	14	2	0	0	0	0.027453	1	11112	11112		45.972	3.5761	1	289630			26998	2807	22088	22115	30197	30197					0.03297439097673305
KVNSLEKGEY	10	Unmodified	_KVNSLEKGEY_					0	0	0		tr|A0A7D6ZMP3|A0A7D6ZMP3_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12815PE=3SV=1	tr|A0A7D6ZMP3|A0A7D6ZMP3_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12815PE=3SV=1	tr|A0A7D6ZMP3|A0A7D6ZMP3_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12815PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	584.330322265625	2	583.806228	1165.5979	0.41643	0.00024312	1.8173	0.0010609	2.2337	0.0013041	583.8074450416863	112.33	1.0847	112.2	111.69	112.77	-0.12174					34	21	2	0	0	0	0.026826	1	10625	10625		36.447	0	1	35161			26999	35666	22089	22116	30198	30198					0.021727894352579824
KVNYLLCSLL	10	Unmodified	_KVNYLLCSLL_					0	0	0		CNNM4|p.G239V|1|0.24|ENSG00000158158|chr2:96761715-96761715|G/T|missense_variant	CNNM4|p.G239V|1|0.24|ENSG00000158158|chr2:96761715-96761715|G/T|missense_variant	CNNM4|p.G239V|1|0.24|ENSG00000158158|chr2:96761715-96761715|G/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.333251953125	2	583.33611	1164.65767	1.6797	0.00097985	-2.8171	-0.0016433	-1.1374	-0.00066347	583.3344106571227	115.48	1.1207	115.48	114.88	116	0					36	23	2	0	0	0	0.026915	1	13181	13181		27.882	6.1965	1	356830			27000	586	22090	22117	30199	30199					0.08192388844918241
KVPARVPAA	9	Unmodified	_KVPARVPAA_					0	0	0		ENSG00000282936|ENST00000634965|unknown	ENSG00000282936|ENST00000634965|unknown	ENSG00000282936|ENST00000634965|unknown	MULTI-SECPEP	OvCa99_classI_Rep5	1	454.22003173828125	2	454.787444	907.560336	-0.53136	-0.00024165	0.53955	0.00024538	0.0081897	3.7246E-06	454.78750280784647	26.117	0.39963	26.117	25.943	26.342	0					15	7	3	0	0	0	0.027462	1	644	644		38.806	3.6054	1	98758			27001	9609	22091	22118	30200	30200					0.1028578775093365
KVPEKKVLV	9	Unmodified	_KVPEKKVLV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.P12974Lfs*4|1|0.05|ENSG00000155657|chr2:178631204-178631205|-/GTACA|frameshift_variant;TTN|p.E11597Rfs*5|1|0.5|ENSG00000155657|chr2:178651954-178651954|A/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.7969970703125	2	520.347335	1038.68012	-1.1042	-0.00057458	-1.8829	-0.00097979	-2.9872	-0.0015544	520.3458981959106	80.984	0.54001	78.273	78.052	78.592	-2.7106					19	10	3	0	0	0	0.027462	1	6619	6619		14.865	0	1	49921			27002	5793;36288	22092	22119	30201	30201					0.16232356304840323
KVPFMNWFGNQ	11	Unmodified	_KVPFMNWFGNQ_					0	0	0			REV__ENST00000493727.5_1_13:115047468-115051873:+|nuORF	REV__ENST00000493727.5_1_13:115047468-115051873:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	456.55792236328125	3	456.557019	1366.64923	-0.32245	-0.00014722	-1.4076	-0.00064265	-1.7301	-0.00078987	456.556362786401	54.827	0.72477	54.827	54.59	55.315	0					41	16	5	0	0	0	0.63942	1	4446	4446		41.08	2.366	1	1957700	+		27003	26712	22093	22120	30202	30202					-0.01943165071702424
KVPFMNWFGNQ	11	Unmodified	_KVPFMNWFGNQ_					0	0	0			REV__ENST00000493727.5_1_13:115047468-115051873:+|nuORF	REV__ENST00000493727.5_1_13:115047468-115051873:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	456.557019	1366.64923	-0.32245	-0.00014722	-1.4076	-0.00064265	-1.7301	-0.00078987	456.556362786401	54.827	0.72477	54.827	54.59	55.315	0	0	0	NaN	41.08	41	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1957700	+		27004	26712	22093	22120							-0.01943165071702424
KVPFQNRGK	9	Unmodified	_KVPFQNRGK_					0	0	0		ENSG00000101639|ENST00000506447|CEP192;nc|ENSG00000101639|Q8TEP8-2|CEP192;nc|ENSG00000101639|Q8TEP8-1|CEP192;ENST00000513432.5_1_18:13030586-13057756:+|nuORF	ENSG00000101639|ENST00000506447|CEP192	ENSG00000101639|ENST00000506447|CEP192	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.80908203125	2	537.314358	1072.61416	-0.98251	-0.00052791	-0.066149	-3.5543E-05	-1.0487	-0.00056346	537.3140942124868	65.156	0.77149	61.67	61.407	62.179	-3.4854					24	15	3	0	0	0	0.027462	1	4731	4731		30.504	1.3541	1	132830			27005	2192	22094	22121	30203	30203					0.08075960182668496
KVPKGKIVP	9	Unmodified	_KVPKGKIVP_					0	0	0		nc|ENSG00000197057|Q6ZMT9-2|DTHD1;nc|ENSG00000197057|Q6ZMT9|DTHD1;ENSG00000197057|ENST00000639862|DTHD1	nc|ENSG00000197057|Q6ZMT9-2|DTHD1	nc|ENSG00000197057|Q6ZMT9-2|DTHD1	MULTI-SECPEP	OvCa9_classI_Rep3	3	484.3173828125	2	483.328945	964.643337	-0.51086	-0.00024691	-0.24171	-0.00011683	-0.75257	-0.00036374	483.3285923895368	115.47	0.54285	114.43	114.26	114.8	-1.0414					19	10	3	0	0	0	0.027462	1	8599	8599		30.504	0	1	21424			27006	8673	22095	22122	30204	30204					0.15960104478949688
KVPVPRELI	9	Unmodified	_KVPVPRELI_					0	0	0			REV__tr|A0A553SRT7|A0A553SRT7_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_01865PE=4SV=1	REV__tr|A0A553SRT7|A0A553SRT7_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_01865PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.8369140625	2	525.837134	1049.65972	0.017548	9.2276E-06	-0.43437	-0.00022841	-0.41682	-0.00021918	525.8368001771031	114.12	1.6848	112.67	112.34	114.02	-1.4461					77	32	4	0	0	0	0.29717	1	10595	10595		63.306	2.3343	1	141600	+		27007	30764	22096	22123	30205	30205					0.1368718564503979
KVPVRPKDP	9	Unmodified	_KVPVRPKDP_					0	0	0		ENSG00000171094|ENST00000389048|ALK	ENSG00000171094|ENST00000389048|ALK	ENSG00000171094|ENST00000389048|ALK	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.8177490234375	2	518.319109	1034.62366	-0.28709	-0.0001488	-0.1031	-5.3438E-05	-0.39019	-0.00020224	518.3187538322953	57.304	1.2359	57.304	56.623	57.859	0					52	28	3	0	0	0	0.027462	1	4832	4832		27.882	0	1	573460			27008	7169	22097	22124	30206	30206					0.10773728468188892
KVQDKSYSL	9	Unmodified	_KVQDKSYSL_					0	0	0		tr|A0A553SSN9|A0A553SSN9_NIACIL,D-TPasecatalyticdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03410PE=4SV=1	tr|A0A553SSN9|A0A553SSN9_NIACIL,D-TPasecatalyticdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03410PE=4SV=1	tr|A0A553SSN9|A0A553SSN9_NIACIL,D-TPasecatalyticdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03410PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	534.2907104492188	2	534.290214	1066.56587	1.9384	0.0010357	0.23639	0.0001263	2.1748	0.001162	534.2902066276332	122.34	1.337	122.34	122.04	123.37	0					82	28	4	0	0	0	0.51865	1	14121	14121		40.778	0	1	3180200			27009	34396	22098	22125	30207	30207					0.03525421752101465
KVQEETTLVV	10	Unmodified	_KVQEETTLVV_					0	0	0		ENST00000461762.5_1_9:132595912-132596119:-|nuORF	ENST00000461762.5_1_9:132595912-132596119:-|nuORF	ENST00000461762.5_1_9:132595912-132596119:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	573.320068359375	2	573.324254	1144.63395	-1.7625	-0.0010105	1.1332	0.00064969	-0.62933	-0.00036081	573.3246679032849	146.58	1.5788	145.15	144.65	146.22	-1.4357					69	30	3	0	0	0	0.72319	1	14472	14472		27.882	2.3082	1	161770			27010	12186	22099	22126	30208	30208					0.06742246612066083
KVQEQVHTL	9	Unmodified	_KVQEQVHTL_					0	0	0		ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.35791015625	2	541.303655	1080.59276	-1.205	-0.00065227	1.3449	0.00072801	0.13994	7.5747E-05	541.304121801623	57.683	0.79524	54.891	54.427	55.223	-2.792					27	15	3	0	0	0	0.027462	1	4123	4123		29.15	8.2026	1	28257			27011	4448	22100	22127	30209	30209					0.05568530363279933
KVQEQVHTL	9	Unmodified	_KVQEQVHTL_					0	0	0		ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	541.303655	1080.59276	-0.84212	-0.00045584	-0.84101	-0.00045524	-1.6831	-0.00091108	541.3034861041554	58.379	0.95258	54.987	54.397	55.35	-3.392	0.047808	-0.0013072	NaN	56.721	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64039			27012	4448	22100	22127							0.05568530363279933
KVQGKRTGSSL	11	Unmodified	_KVQGKRTGSSL_					0	0	0		ENST00000528737.5_1_11:58911990-58912182:+|nuORF	ENST00000528737.5_1_11:58911990-58912182:+|nuORF	ENST00000528737.5_1_11:58911990-58912182:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	580.8391723632812	2	580.840936	1159.66732	-2.2913	-0.0013309	-1.8276	-0.0010616	-4.119	-0.0023925	580.8394821835539	92.528	4.8826	90.545	87.741	92.624	-1.9836					169	97	3	0	0	0	0.52842	1	5881	5881		51.193	3.2332	1	529950			27013	13261	22101	22128	30210	30210					0.09387293174654587
KVQGQQPR	8	Unmodified	_KVQGQQPR_					0	0	0			REV__nc|ENSG00000171634|Q12830-4|BPTF	REV__nc|ENSG00000171634|Q12830-4|BPTF	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.3089294433594	2	470.769783	939.525013	-0.40332	-0.00018987	0.30775	0.00014488	-0.095571	-4.4992E-05	470.76984003910934	24.863	0.45461	24.863	24.687	25.142	0					10	8	2	0	0	0	0.028476	1	502	502		18.324	0	1	48893	+		27014	21633	22102	22129	30211	30211					0.052831252231385406
KVQGTTIWETI	11	Unmodified	_KVQGTTIWETI_					0	0	0			REV__tr|A0A553SPX2|A0A553SPX2_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08575PE=4SV=1	REV__tr|A0A553SPX2|A0A553SPX2_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08575PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	637.82763671875	2	638.350803	1274.68705	1.145	0.00073089	3.6027	0.0022998	4.7477	0.0030307	638.3535079189818	153.01	0.49881	153.01	152.85	153.35	0					12	9	2	0	0	0	0.025912	1	17923	17923		11.636	3.8314	1	46852	+		27015	30581	22103	22130	30212	30212					0.06069624394740458
KVQGVNKVL	9	Unmodified	_KVQGVNKVL_					0	0	0			REV__tr|A0A7D6VWB6|A0A7D6VWB6_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=bglXPE=3SV=1	REV__tr|A0A7D6VWB6|A0A7D6VWB6_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=bglXPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.8188781738281	2	492.813659	983.612765	-0.059501	-2.9323E-05	-1.2313	-0.00060681	-1.2908	-0.00063613	492.812883549601	62.711	0.48637	59.253	59.011	59.498	-3.4577					20	9	3	0	0	0	0.02741	1	4390	4390		60.972	8.6728	1	282730	+		27016	31744	22104	22131	30213	30213					0.12030326093884014
KVQHVAPIIVG	11	Unmodified	_KVQHVAPIIVG_					0	0	0			REV__tr|A0A553SKJ8|A0A553SKJ8_NIACIYrhC-likeproteinOS=NialliacirculansOX=1397GN=CEQ21_18770PE=4SV=1	REV__tr|A0A553SKJ8|A0A553SKJ8_NIACIYrhC-likeproteinOS=NialliacirculansOX=1397GN=CEQ21_18770PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	580.861328125	2	580.861141	1159.70773	-0.2089	-0.00012134	0.25713	0.00014936	0.048238	2.8019E-05	580.8611123258897	107.98	1.0318	107.76	107.44	108.47	-0.22498					59	20	4	0	0	0	0.69808	1	10116	10116		30.318	4.7437	1	208450	+		27017	30133	22105	22132	30214	30214					0.13426259565062537
KVQHVAPIIVG	11	Unmodified	_KVQHVAPIIVG_					0	0	0			REV__tr|A0A553SKJ8|A0A553SKJ8_NIACIYrhC-likeproteinOS=NialliacirculansOX=1397GN=CEQ21_18770PE=4SV=1	REV__tr|A0A553SKJ8|A0A553SKJ8_NIACIYrhC-likeproteinOS=NialliacirculansOX=1397GN=CEQ21_18770PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	580.861083984375	2	580.861141	1159.70773	-0.46261	-0.00026871	0.52019	0.00030216	0.057586	3.345E-05	580.8612138300758	109.64	1.0004	107.92	107.58	108.58	-1.7256					54	18	4	0	0	0	0.56722	1	10060	10060		47.657	3.2801	1	304000	+		27018	30133	22105	22132	30215	30215					0.13426259565062537
KVQIRNLE	8	Unmodified	_KVQIRNLE_					0	0	0			REV__ENSG00000128731|ENST00000261609|HERC2	REV__ENSG00000128731|ENST00000261609|HERC2	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.82373046875	2	500.300916	998.587279	-1.8828	-0.00094198	2.6643	0.0013329	0.78146	0.00039096	500.3020754608396	61.854	0.65405	59.095	58.829	59.483	-2.7593					30	12	3	0	0	0	0.028476	1	4619	4619		29.15	0	1	71442	+		27019	18868	22106	22133	30216	30216					0.08792851571467963
KVQPKKLP	8	Unmodified	_KVQPKKLP_					0	0	0		ENSG00000136381|ENST00000258886|IREB2;nc|ENSG00000136381|P48200-2|IREB2	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.2808837890625	2	469.313295	936.612037	-0.76887	-0.00036084	0.42838	0.00020104	-0.34049	-0.0001598	469.31358640838226	49.772	0.30637	49.772	49.55	49.856	0					9	6	2	0	0	0	0.028476	1	3727	3727		25.45	1.2474	1	90700			27020	4487	22107	22134	30217	30217					0.14119531444839595
KVQPPRKVV	9	Unmodified	_KVQPPRKVV_					0	0	0			REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.2738037109375	2	525.842751	1049.67095	-0.24601	-0.00012936	-0.22946	-0.00012066	-0.47548	-0.00025003	525.8425299906795	93.613	1.0872	92.445	92.157	93.244	-1.168					36	20	3	0	0	0	0.027462	1	8385	8385		11.511	0	1	60458	+		27021	19775	22108	22135	30218	30218					0.1481000773917458
KVQPRRPK	8	Unmodified	_KVQPRRPK_					0	0	0		ENST00000276431.8_1_8:22926459-22926618:-|nuORF	ENST00000276431.8_1_8:22926459-22926618:-|nuORF	ENST00000276431.8_1_8:22926459-22926618:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.8212585449219	2	504.824892	1007.63523	0.43752	0.00022087	2.0762	0.0010481	2.5137	0.001269	504.8256465388924	110.97	0.80094	109.86	109.6	110.4	-1.1038					23	15	2	0	0	0	0.028476	1	8071	8071		24.203	0	1	29065			27022	10031	22109	22136	30219	30219					0.13171970282166967
KVQRVEAL	8	Unmodified	_KVQRVEAL_					0	0	0		nc|ENSG00000011275|Q9NWF9-3|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;RNF216|p.L834Pfs*8|1|0.1|ENSG00000011275|chr7:5622959-5622960|CA/-|frameshift_variant;ENSG00000011275|ENST00000389902|RNF216	nc|ENSG00000011275|Q9NWF9-3|RNF216	nc|ENSG00000011275|Q9NWF9-3|RNF216	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.2626953125	2	471.790184	941.565815	-0.1389	-6.5531E-05	0.91669	0.00043249	0.77779	0.00036695	471.79017368844825	53.631	0.972	50.388	50.062	51.034	-3.243					35	18	3	0	0	0	0.028476	1	3269	3269		16.473	0	1	84956			27023	960	22110	22137	30220	30220					0.0926946654275298
KVQRVEAL	8	Unmodified	_KVQRVEAL_					0	0	0		nc|ENSG00000011275|Q9NWF9-3|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;RNF216|p.L834Pfs*8|1|0.1|ENSG00000011275|chr7:5622959-5622960|CA/-|frameshift_variant;ENSG00000011275|ENST00000389902|RNF216	nc|ENSG00000011275|Q9NWF9-3|RNF216	nc|ENSG00000011275|Q9NWF9-3|RNF216	MULTI-MATCH	OvCa9_classI_Rep2	2		2	471.790184	941.565815	-1.2247	-0.00057779	0.68158	0.00032156	-0.54309	-0.00025622	471.7902457393759	53.318	0.79166	50.504	50.084	50.875	-2.8139	0.057689	-0.00012394	NaN	30.504	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26440			27024	960	22110	22137							0.0926946654275298
KVQVMGKVP	9	Unmodified	_KVQVMGKVP_					0	0	0		ENST00000476047.1_1_3:76483919-76484456:+|nuORF;ENST00000461993.1_1_1:40535258-40537202:+|nuORF;ZMPSTE24-CAP1|1|fusion;nc|ENSG00000131236|Q01518-2|CAP1;ENSG00000131236|ENST00000372805|CAP1;PPT1-CAP1|1|fusion;PPT1-CAP1|2|fusion	ENST00000476047.1_1_3:76483919-76484456:+|nuORF	ENST00000476047.1_1_3:76483919-76484456:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	493.2976989746094	2	493.296788	984.579022	3.1299	0.001544	0.74498	0.0003675	3.8749	0.0019115	493.29693905803276	26.988	0.77444	24.278	24.097	24.871	-2.7097					47	21	3	0	0	0	0.71901	1	441	441		11.511	0	1	72756			27025	4050	22111	22138	30221	30221					0.08611581330490026
KVRAPKSKH	9	Unmodified	_KVRAPKSKH_					0	0	0			REV__nc|ENSG00000041982|P24821-4|TNC	REV__nc|ENSG00000041982|P24821-4|TNC	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.7627563476562	2	525.830175	1049.6458	-0.97944	-0.00051502	-0.13527	-7.1128E-05	-1.1147	-0.00058615	525.8296769669541	63.867	0.52443	61.123	60.949	61.473	-2.7444					19	9	3	0	0	0	0.027462	1	4836	4836		20.947	0	1	54861	+		27026	16634	22112	22139	30222	30222					0.1229595293661987
KVREEVVTV	9	Unmodified	_KVREEVVTV_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-12|FN1;ENST00000492816.6_1_2:216226280-216244056:-|nuORF;ENST00000480024.1_1_2:216232580-216235161:-|nuORF	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.8154907226562	2	529.813856	1057.61316	-0.29314	-0.00015531	-0.61581	-0.00032626	-0.90895	-0.00048157	529.8135501116423	51.484	1.3146	51.484	51.207	52.522	0					48	30	2	0	0	0	0.22621	1	3959	3959		71.877	0.58177	1	8407200			27027	3093	22113	22140	30223	30223					0.0866570102307378
KVREIPAVAT	10	Unmodified	_KVREIPAVAT_					0	0	0			REV__ENSG00000151729|ENST00000281456|SLC25A4;REV__ENSG00000005022|ENST00000317881|SLC25A5	REV__ENSG00000151729|ENST00000281456|SLC25A4	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.35791015625	2	542.329673	1082.64479	-1.1773	-0.0006385	0.45863	0.00024873	-0.7187	-0.00038977	542.329505057716	57.576	1.0948	54.784	54.278	55.373	-2.792					28	21	2	0	0	0	0.026956	1	4123	4123		14.137	0	1	27813	+		27028	20252;16389	22114	22141	30224	30224					0.10677693777029162
KVRGMDIIFV	10	Unmodified	_KVRGMDIIFV_					0	0	0		tr|A0A7D6VQI8|A0A7D6VQI8_9CLOTLargeribosomalsubunitproteinuL5OS=ClostridiumintestinaleOX=36845GN=rplEPE=3SV=1	tr|A0A7D6VQI8|A0A7D6VQI8_9CLOTLargeribosomalsubunitproteinuL5OS=ClostridiumintestinaleOX=36845GN=rplEPE=3SV=1	tr|A0A7D6VQI8|A0A7D6VQI8_9CLOTLargeribosomalsubunitproteinuL5OS=ClostridiumintestinaleOX=36845GN=rplEPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3422241210938	2	589.341726	1176.6689	-2.1868	-0.0012888	4.2276	0.0024915	2.0407	0.0012027	589.3441619466173	148.26	4.549	146.82	145.53	150.08	-1.435					304	95	6	0	0	0	0.71192	1	14516	14516		29.15	4.6304	1	385010			27029	34852	22115	22142	30225	30225					0.0876321093903698
KVRHPWACP	9	Unmodified	_KVRHPWACP_					0	0	0		ENST00000434752.3_1_5:138727297-138727579:-|nuORF	ENST00000434752.3_1_5:138727297-138727579:-|nuORF	ENST00000434752.3_1_5:138727297-138727579:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.28369140625	2	547.289828	1092.5651	2.3643	0.001294	-0.20988	-0.00011487	2.1545	0.0011791	547.2896875631318	94.783	0.85497	94.783	94.306	95.161	0					26	19	2	0	0	0	0.027456	1	10272	10272		23.042	0	1	558420			27030	11850	22116	22143	30226	30226					0.02252348622050704
KVRKELTF	8	Unmodified	_KVRKELTF_					0	0	0			REV__ENSG00000118308|ENST00000556887|IRAG2	REV__ENSG00000118308|ENST00000556887|IRAG2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.7640075683594	2	510.813659	1019.61277	-1.1869	-0.00060631	1.0133	0.00051758	-0.1737	-8.8727E-05	510.8139327770997	42.802	0.47175	39.795	39.696	40.168	-3.0074					9	8	2	0	0	0	0.028476	1	2015	2015		45.952	3.5558	1	9284.5	+		27031	18391	22117	22144	30227	30227					0.10374326093881336
KVRKPGRKP	9	Unmodified	_KVRKPGRKP_					0	0	0		ENSG00000167173|ENST00000394987|C15orf39;nc|nan|Q6ZRI6-3|C15orf39;ENST00000567617.1_1_15:75501147-75503457:+|nuORF	ENSG00000167173|ENST00000394987|C15orf39	ENSG00000167173|ENST00000394987|C15orf39	MULTI-SECPEP	OvCa9_classI_Rep2	2	533.8041381835938	2	533.353817	1064.69308	-1.967	-0.0010491	3.173	0.0016923	1.206	0.00064321	533.3553326964192	55.415	0.84279	52.601	52.422	53.265	-2.8139					31	16	3	0	0	0	0.027462	1	3928	3928		47.916	25.956	1	60932			27032	6764	22118	22145	30228	30228					0.1633223220758282
KVRLVPLQIQL	11	Unmodified	_KVRLVPLQIQL_					0	0	0		ENSG00000066583|ENST00000173527|ISOC1	ENSG00000066583|ENST00000173527|ISOC1	ENSG00000066583|ENST00000173527|ISOC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.2414245605469	3	436.29049	1305.84964	0.25802	0.00011257	-0.15215	-6.6381E-05	0.10587	4.6192E-05	436.29027897978386	21.934	1.1079	20.596	20.27	21.378	-1.3386					65	21	4	0	0	0	0.026364	1	188	188		13.508	4.7086	1	103230			27033	1354	22119	22146	30229	30229					0.20895052587434293
KVRREGVKV	9	Unmodified	_KVRREGVKV_					0	0	0		ENSG00000156709|ENST00000287295|AIFM1;nc|ENSG00000156709|O95831-5|AIFM1;nc|ENSG00000156709|O95831-2|AIFM1;nc|ENSG00000156709|O95831-3|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	MULTI-MSMS	OvCa99_classI_Rep5	1	535.8438720703125	2	535.843282	1069.67201	-0.15264	-8.1792E-05	-0.18738	-0.0001004	-0.34002	-0.0001822	535.8431141522316	35.586	0.36874	35.586	35.384	35.753	0					23	7	4	0	0	0	0.22621	1	1808	1808		71.877	0	1	662580			27034	5855	22120	22147	30230	30230					0.13996222108062284
KVRTDTPLYK	10	Unmodified	_KVRTDTPLYK_					0	0	0			REV__tr|A0A7D6VUX4|A0A7D6VUX4_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22180PE=4SV=1	REV__tr|A0A7D6VUX4|A0A7D6VUX4_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22180PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.21771240234375	3	407.571434	1219.69247	0.46775	0.00019064	0.29231	0.00011914	0.76007	0.00030978	407.5710797964549	53.465	0.42843	53.465	53.305	53.733	0					20	9	3	0	0	0	0.02678	1	4289	4289		51.528	27.296	1	175770	+		27035	31698	22121	22148	30231	30231					0.09141347977219993
KVRTVYIP	8	Unmodified	_KVRTVYIP_					0	0	0			REV__COPA|p.H613Tfs*3|1|0.05|ENSG00000122218|chr1:160298986-160298986|C/-|frameshift_variant	REV__COPA|p.H613Tfs*3|1|0.05|ENSG00000122218|chr1:160298986-160298986|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.3149108886719	2	488.302927	974.591301	-0.22563	-0.00011018	0.33385	0.00016302	0.10822	5.2844E-05	488.3029566010033	105.1	0.43689	105.1	104.79	105.22	0					14	9	2	0	0	0	0.028476	1	11762	11762		30.504	1.3541	1	199630	+		27036	16226	22122	22149	30232	30232					0.10298941065184408
KVRVKVQDP	9	Unmodified	_KVRVKVQDP_					0	0	0			REV__ENSG00000155087|ENST00000285402|ODF1	REV__ENSG00000155087|ENST00000285402|ODF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.7426147460938	2	534.82984	1067.64513	0.11495	6.1481E-05	-0.72443	-0.00038745	-0.60947	-0.00032596	534.8291888664501	65.116	0.47983	65.116	64.71	65.19	0					17	11	2	0	0	0	0.027455	1	5934	5934		42.396	1.618	1	231730	+		27037	20412	22123	22150	30233	30233					0.11401113496890503
KVSEKVSAHT	10	Unmodified	_KVSEKVSAHT_					0	0	0		ENST00000420686.5_1_2:85836070-85838959:-|nuORF;ENSG00000168887|ENST00000306336|C2orf68	ENST00000420686.5_1_2:85836070-85838959:-|nuORF	ENST00000420686.5_1_2:85836070-85838959:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	543.2978515625	2	543.301113	1084.58767	-0.24382	-0.00013247	-3.9742	-0.0021592	-4.218	-0.0022917	543.2979720057091	22.966	0.52527	22.966	22.821	23.347	0					19	10	3	0	0	0	0.69073	1	273	273		31.53	1.2121	1	76832			27038	6951	22124	22151	30234	30234					0.04876226500641678
KVSERYLTM	9	Oxidation (M)	_KVSERYLTM(Oxidation (M))_		KVSERYLTM(1)		KVSERYLTM(46)	0	0	1		nc|ENSG00000060982|P54687-2|BCAT1;nc|ENSG00000060982|P54687-3|BCAT1;chr12:24878649-24894275|315|12.83|0.4|5.01|-|ENST00000539780|BCAT1,BCAT1;nc|ENSG00000060982|P54687-4|BCAT1;ENSG00000060982|ENST00000261192|BCAT1;nc|ENSG00000060982|P54687-5|BCAT1	nc|ENSG00000060982|P54687-2|BCAT1	nc|ENSG00000060982|P54687-2|BCAT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	571.7982788085938	2	571.797349	1141.58014	-1.5751	-0.00090061	1.4545	0.00083166	-0.12059	-6.8952E-05	571.7980551306781	50.352	0.93077	47.211	46.922	47.853	-3.1416					43	17	3	0	0	0	0.45842	1	2902	2902		46.457	7.2039	1	463090			27039	313	22125	22152	30235	30235		7			0.01501750908687427
KVSESTHVL	9	Unmodified	_KVSESTHVL_					0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.790771484375	2	500.277106	998.53966	-0.86148	-0.00043098	0.74057	0.00037049	-0.12091	-6.0489E-05	500.2774261406239	48.394	0.72289	45.286	45.039	45.761	-3.1077					20	13	2	0	0	0	0.027441	1	2716	2716		29.15	0	1	53504			27040	8850	22126	22153	30236	30236					0.04033152580609567
KVSFKKKV	8	Unmodified	_KVSFKKKV_					0	0	0		ENSG00000177150|ENST00000651643|FAM210A	ENSG00000177150|ENST00000651643|FAM210A	ENSG00000177150|ENST00000651643|FAM210A	MULTI-SECPEP	OvCa9_classI_Rep2	2	482.2799072265625	2	482.32112	962.627687	-0.16395	-7.9075E-05	-1.9043	-0.00091851	-2.0683	-0.00099758	482.3202629966332	107.38	0.19791	107.07	106.92	107.12	-0.30836					5	3	2	0	0	0	0.028476	1	10011	10011		33.516	24.045	1	9318			27041	7662	22127	22154	30237	30237					0.1448781796188996
KVSGGILRI	9	Unmodified	_KVSGGILRI_					0	0	0		nc|ENSG00000135766|Q9GZT9-3|EGLN1;ENSG00000135766|ENST00000366641|EGLN1;ENST00000476717.1_1_1:231502159-231556008:-|nuORF	nc|ENSG00000135766|Q9GZT9-3|EGLN1	nc|ENSG00000135766|Q9GZT9-3|EGLN1	MULTI-MSMS	OvCa99_classI_Rep5	1	471.8097839355469	2	471.808377	941.6022	-0.30372	-0.0001433	-0.059829	-2.8228E-05	-0.36355	-0.00017153	471.8082393163938	68.419	0.91093	68.419	68.152	69.063	0					62	21	4	0	0	0	0.075543	2	6445	6445;6472		104.06	16.302	1	10171000			27042	4413	22128	22155	30238;30239	30238					0.1290634343945385
KVSGVILSV	9	Unmodified	_KVSGVILSV_					0	0	0		ENST00000564968.1_1_16:1507514-1509320:-|nuORF;ENST00000563822.1_1_16:1505719-1509320:-|nuORF;nc|ENSG00000103249|P51798-2|CLCN7;ENSG00000103249|ENST00000382745|CLCN7	ENST00000564968.1_1_16:1507514-1509320:-|nuORF	ENST00000564968.1_1_16:1507514-1509320:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	451.2865905761719	2	451.289485	900.564418	3.2822	0.0014812	-0.72948	-0.00032921	2.5527	0.001152	451.28898020059523	89.974	0.78103	89.974	89.681	90.462	0					30	18	3	0	0	0	0.34132	1	9619	9619		58.23	2.7257	1	785840			27043	2298	22129	22156	30240	30240					0.11015832454006613
KVSHLGLL	8	Unmodified	_KVSHLGLL_					0	0	0			REV__ENSG00000173926|ENST00000308660|MARCHF3	REV__ENSG00000173926|ENST00000308660|MARCHF3	MULTI-MSMS	OvCa9_classI_Rep2	2	433.7760009765625	2	433.776545	865.538538	-0.012289	-5.3307E-06	0.31994	0.00013878	0.30765	0.00013345	433.77652204102844	83.183	2.0991	81.584	80.645	82.744	-1.5989					79	41	3	0	0	0	0.71369	1	7153	7153		40.573	0	1	545560	+		27044	21809	22130	22157	30241	30241					0.10038983002368695
KVSIDLAFEV	10	Unmodified	_KVSIDLAFEV_					0	0	0			REV__ENST00000446993.5_1_7:124568995-124569909:-|nuORF	REV__ENST00000446993.5_1_7:124568995-124569909:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.2672729492188	2	560.816064	1119.61758	3.2975	0.0018493	-0.18023	-0.00010108	3.1173	0.0017482	560.8155901618284	86.537	0.49042	86.537	86.311	86.801	0					22	11	3	0	0	0	0.02676	1	9157	9157		58.23	15.834	1	626810	+		27045	24788	22131	22158	30242	30242					0.06255165445986677
KVSKAAVLAR	10	Unmodified	_KVSKAAVLAR_					0	0	0			REV__nc|ENSG00000175054|Q13535-2|ATR	REV__nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.7933349609375	2	521.840208	1041.66586	-0.89163	-0.00046529	-0.7759	-0.0004049	-1.6675	-0.00087019	521.8397075719865	38.98	0.35999	38.98	38.836	39.196	0					11	7	2	0	0	0	0.027174	1	2260	2260		9.7057	0	1	53587	+		27046	21866	22132	22159	30243	30243					0.14669703876552376
KVSKAVAQTSA	11	Unmodified	_KVSKAVAQTSA_					0	0	0		tr|A0A553SH13|A0A553SH13_NIACIHelix-turn-helixconjugativetransposon-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11980PE=4SV=1	tr|A0A553SH13|A0A553SH13_NIACIHelix-turn-helixconjugativetransposon-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11980PE=4SV=1	tr|A0A553SH13|A0A553SH13_NIACIHelix-turn-helixconjugativetransposon-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11980PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3167724609375	2	545.316763	1088.61897	-1.7047	-0.0009296	1.3026	0.00071033	-0.40209	-0.00021926	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.7046	1	14123	14123		28.081	0.19925	1	202430			27047	33218	22133	22160	30244	30244					0.07820799534761136
KVSLGIAGILI	11	Unmodified	_KVSLGIAGILI_					0	0	0		nc|ENSG00000141458|O15118-2|NPC1;ENSG00000141458|ENST00000269228|NPC1;ENST00000540608.5_1_18:21119776-21166285:-|nuORF	nc|ENSG00000141458|O15118-2|NPC1	nc|ENSG00000141458|O15118-2|NPC1	MULTI-SECPEP	OvCa9_classI_Rep3	3	542.8113403320312	2	542.360442	1082.70633	0.16836	9.1314E-05	-0.88606	-0.00048057	-0.7177	-0.00038925	542.3600045234597	73.673	0.39961	71.185	70.925	71.324	-2.4873					9	7	2	0	0	0	0.025806	1	3572	3572		24.519	4.5224	1	9841.2			27048	4917	22134	22161	30245	30245					0.16828625476341585
KVSNKVRVG	9	Unmodified	_KVSNKVRVG_					0	0	0			REV__ENST00000486444.1_1_3:101568430-101571632:+|nuORF	REV__ENST00000486444.1_1_3:101568430-101571632:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.80828857421875	2	493.808908	985.603263	0.72189	0.00035648	-1.0814	-0.00053399	-0.35948	-0.00017751	493.8082033689365	31.126	0.76694	28.595	28.34	29.107	-2.5308					53	29	3	0	0	0	0.64427	1	672	672		26.693	1.1189	1	34842	+		27049	19934	22135	22162	30246	30246					0.10988557808377664
KVSQCPYIS	9	Unmodified	_KVSQCPYIS_					0	0	0			REV__chr21:37013618-37017874|361|11.92|0.71|4.07|+|2|RIPPLY3,RIPPLY3|2	REV__chr21:37013618-37017874|361|11.92|0.71|4.07|+|2|RIPPLY3,RIPPLY3|2	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.3040771484375	2	512.760235	1023.50592	0.16637	8.5309E-05	-3.9025	-0.002001	-3.7361	-0.0019157	512.7568664149891	103.21	0.73627	101.77	101.45	102.18	-1.4347					33	13	4	0	0	0	0.027448	1	7157	7157		27.882	0	1	30978	+		27050	16027	22136	22163	30247	30247					-0.004895921827937855
KVSQSTSSLVD	11	Unmodified	_KVSQSTSSLVD_					0	0	0		nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	574.8367919921875	2	575.801143	1149.58773	-1.604	-0.00092357	0.45505	0.00026202	-1.1489	-0.00066155	576.3023812758711	120.16	0.68043	118.81	118.56	119.24	-1.3444					15	12	2	0	0	0	0.02548	1	11268	11268		51.528	17.355	1	23704			27051	1070	22137	22164	30248	30248					0.018921817099908367
KVSRFLRP	8	Unmodified	_KVSRFLRP_					0	0	0		nc|ENSG00000175356|Q9NQ36-2|SCUBE2;nc|ENSG00000175356|Q9NQ36|SCUBE2;ENSG00000175356|ENST00000649792|SCUBE2;ENST00000518447.1_1_11:9042594-9043530:-|nuORF;ENST00000524317.1_1_11:9042594-9047435:-|nuORF;nc|ENSG00000175356|Q9NQ36-3|SCUBE2;ENSG00000159307|ENST00000360835|SCUBE1	nc|ENSG00000175356|Q9NQ36-2|SCUBE2	nc|ENSG00000175356|Q9NQ36-2|SCUBE2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.76416015625	2	501.813993	1001.61343	-0.23655	-0.0001187	-0.8072	-0.00040507	-1.0437	-0.00052377	501.81354375450695	60.915	1.0188	57.485	57.345	58.364	-3.43					27	20	2	0	0	0	0.028476	1	4240	4240		45.952	18.07	1	51006			27052	7539	22138	22165	30249	30249					0.11269165533610703
KVSRFLRP	8	Unmodified	_KVSRFLRP_					0	0	0		nc|ENSG00000175356|Q9NQ36-2|SCUBE2;nc|ENSG00000175356|Q9NQ36|SCUBE2;ENSG00000175356|ENST00000649792|SCUBE2;ENST00000518447.1_1_11:9042594-9043530:-|nuORF;ENST00000524317.1_1_11:9042594-9047435:-|nuORF;nc|ENSG00000175356|Q9NQ36-3|SCUBE2;ENSG00000159307|ENST00000360835|SCUBE1	nc|ENSG00000175356|Q9NQ36-2|SCUBE2	nc|ENSG00000175356|Q9NQ36-2|SCUBE2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	501.813993	1001.61343	-1.2743	-0.00063947	0.66386	0.00033314	-0.61045	-0.00030633	501.81428220660644	60.209	1.4676	57.439	56.882	58.35	-2.7702	-0.023332	0.00063707	NaN	45.952	43	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29283			27053	7539	22138	22165							0.11269165533610703
KVSRKNIQGVL	11	Unmodified	_KVSRKNIQGVL_					0	0	0		nc|ENSG00000090889|O95239-2|KIF4A	nc|ENSG00000090889|O95239-2|KIF4A	nc|ENSG00000090889|O95239-2|KIF4A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	415.2132263183594	3	414.594461	1240.76155	-0.81345	-0.00033725	1.0111	0.00041919	0.19763	8.1936E-05	414.5947249812607	43.232	0.83506	40.225	39.958	40.793	-3.0074					23	15	2	0	0	0	0.025908	1	2119	2119		27.644	0	1	51034			27054	14917	22139	22166	30250	30250					0.15080431996761945
KVSRLSVIGF	10	Unmodified	_KVSRLSVIGF_					0	0	0		tr|A0A7D6VS36|A0A7D6VS36_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14360PE=4SV=1	tr|A0A7D6VS36|A0A7D6VS36_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14360PE=4SV=1	tr|A0A7D6VS36|A0A7D6VS36_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14360PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	553.3369140625	2	553.340041	1104.66553	-3.3842	-0.0018726	-0.6074	-0.0003361	-3.9916	-0.0022087	553.3396004097149	154.97	0.78694	154.74	154.48	155.26	-0.22696					36	19	3	0	0	0	0.69986	1	15789	15789		30.504	8.5438	1	38307			27055	34983	22140	22167	30251	30251					0.11738284156695045
KVSSIVGPLLY	11	Unmodified	_KVSSIVGPLLY_					0	0	0		tr|A0A553SPG4|A0A553SPG4_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_26325PE=4SV=1	tr|A0A553SPG4|A0A553SPG4_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_26325PE=4SV=1	tr|A0A553SPG4|A0A553SPG4_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_26325PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.309326171875	2	588.355357	1174.69616	0.64018	0.00037665	2.0612	0.0012127	2.7014	0.0015894	588.3560959035797	81.387	0.20679	81.387	81.248	81.455	0					7	4	3	0	0	0	0.025746	1	8392	8392		13.454	0	1	360730			27056	34039	22141	22168	30252	30252					0.11580017751111882
KVSSPLLHF	9	Unmodified	_KVSSPLLHF_					0	0	0			REV__MID1-SPAG17|2|fusion	REV__MID1-SPAG17|2|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.2669677734375	2	514.300384	1026.58622	1.9746	0.0010155	1.772	0.00091132	3.7465	0.0019269	514.8030571556051	107.38	0.75517	107.38	106.97	107.73	0					29	17	2	0	0	0	0.027462	1	12156	12156		29.15	0	1	210480	+		27057	20441	22142	22169	30253	30253					0.07398637202550162
KVSVKTRRS	9	Unmodified	_KVSVKTRRS_					0	0	0		TAF4|p.K971Ffs*103|1|0.04|ENSG00000130699|chr20:61998986-61998987|-/GAGGGTGAAG|frameshift_variant	TAF4|p.K971Ffs*103|1|0.04|ENSG00000130699|chr20:61998986-61998987|-/GAGGGTGAAG|frameshift_variant	TAF4|p.K971Ffs*103|1|0.04|ENSG00000130699|chr20:61998986-61998987|-/GAGGGTGAAG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	531.8084716796875	2	530.832914	1059.65128	0.23152	0.0001229	4.0103	0.0021288	4.2418	0.0022517	530.8350428340175	79.44	0.79476	77.1	76.514	77.309	-2.3399					20	15	2	0	0	0	0.027462	1	4236	4236		32.812	3.6629	1	48438			27058	32943	22143	22170	30254	30254					0.12383631728403088
KVSVNKVKFG	10	Unmodified	_KVSVNKVKFG_					0	0	0			REV__nc|ENSG00000196205|Q5VTE0|EEF1A1P5	REV__nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.3362426757812	2	553.340041	1104.66553	-4.5455	-0.0025152	0.49685	0.00027493	-4.0487	-0.0022403	553.340345188633	155.45	1.0287	153.96	153.73	154.76	-1.4911					55	29	3	0	0	0	0.72319	1	15416	15416		27.882	11.409	1	130600	+		27059	29074	22144	22171	30255	30255					0.11738284156695045
KVSVRRRG	8	Unmodified	_KVSVRRRG_					0	0	0		ENST00000464111.1_1_7:100283679-100283991:-|nuORF	ENST00000464111.1_1_7:100283679-100283991:-|nuORF	ENST00000464111.1_1_7:100283679-100283991:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.7879333496094	2	479.306867	956.599181	0.11447	5.4868E-05	-4.2779	-0.0020504	-4.1634	-0.0019955	479.3024977880481	78.855	0.23383	76.104	75.945	76.179	-2.7514					6	4	2	0	0	0	0.028476	1	6357	6357		7.1934	0	1	13574			27060	12239	22145	22172	30256	30256					0.11914513105318747
KVTDAIAIL	9	Unmodified	_KVTDAIAIL_					0	0	0			REV__nc|ENSG00000165240|Q04656-5|ATP7A	REV__nc|ENSG00000165240|Q04656-5|ATP7A	MULTI-MSMS	OvCa9_classI_Rep3	3	472.29522705078125	2	472.294768	942.574983	-0.054715	-2.5842E-05	-0.61041	-0.00028829	-0.66512	-0.00031413	472.2944757607567	95.336	1.9099	93.441	93.111	95.021	-1.8956					127	37	5	0	0	0	0.18193	1	6234	6234		79.451	2.6769	1	2171700	+		27061	21072	22146	22173	30257	30257					0.10139815108414041
KVTEKQAKP	9	Unmodified	_KVTEKQAKP_					0	0	0			REV__nc|ENSG00000159023|P11171-6|EPB41	REV__nc|ENSG00000159023|P11171-6|EPB41	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.2681274414062	2	514.808574	1027.60259	-0.58909	-0.00030327	0.57164	0.00029429	-0.017445	-8.981E-06	514.8086561472982	55.62	0.77898	55.62	55.273	56.052	0					29	18	2	0	0	0	0.027411	1	4603	4603		58.23	8.6939	1	1113000	+		27062	20591	22147	22174	30258	30258					0.0898971836866167
KVTEYTLSH	9	Unmodified	_KVTEYTLSH_					0	0	0			REV__tr|A0A553SQJ5|A0A553SQJ5_NIACIInitiatorRepproteindomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07810PE=4SV=1	REV__tr|A0A553SQJ5|A0A553SQJ5_NIACIInitiatorRepproteindomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07810PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	539.2763671875	2	539.282389	1076.55022	-4.5199	-0.0024375	-2.9609	-0.0015968	-7.4808	-0.0040343	539.2808318920751	153.09	0.86078	151.66	151.27	152.13	-1.4351					34	19	3	0	0	0	0.63422	1	15176	15176		27.882	1.0861	1	34140	+		27063	30637	22148	22175	30259	30259					0.01501135235048423
KVTFLEKKN	9	Unmodified	_KVTFLEKKN_					0	0	0		tr|A0A553SIQ7|A0A553SIQ7_NIACISporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_15330PE=3SV=1	tr|A0A553SIQ7|A0A553SIQ7_NIACISporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_15330PE=3SV=1	tr|A0A553SIQ7|A0A553SIQ7_NIACISporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_15330PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8297119140625	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.63422	1	14440	14440		27.882	4.8398	1	245610			27064	33412	22149	22176	30260	30260					0.10094577919812764
KVTFLEKKN	9	Unmodified	_KVTFLEKKN_					0	0	0		tr|A0A553SIQ7|A0A553SIQ7_NIACISporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_15330PE=3SV=1	tr|A0A553SIQ7|A0A553SIQ7_NIACISporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_15330PE=3SV=1	tr|A0A553SIQ7|A0A553SIQ7_NIACISporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_15330PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	553.829833984375	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.63422	1	11682	11682		27.882	3.3631	1	308210			27065	33412	22149	22176	30261	30261					0.10094577919812764
KVTFTKVLTGT	11	Unmodified	_KVTFTKVLTGT_					0	0	0		ENSG00000100888|ENST00000646647|CHD8	ENSG00000100888|ENST00000646647|CHD8	ENSG00000100888|ENST00000646647|CHD8	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8558959960938	2	597.858264	1193.70197	-3.1766	-0.0018991	0.037639	2.2503E-05	-3.1389	-0.0018766	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.72491	1	14996	14996		16.717	0.24424	1	436470			27066	2115	22150	22177	30262	30262					0.11287116262747077
KVTHSRSHII	10	Unmodified	_KVTHSRSHII_					0	0	0			REV__ENST00000522207.1_1_8:86351138-86354561:+|nuORF	REV__ENST00000522207.1_1_8:86351138-86354561:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3431396484375	2	589.343646	1176.67274	-5.1334	-0.0030254	3.8974	0.0022969	-1.236	-0.00072842	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.69073	1	12413	12413		31.53	2.3803	1	589610	+		27067	27081	22151	22178	30263	30263					0.09147016757151505
KVTHSRSHII	10	Unmodified	_KVTHSRSHII_					0	0	0			REV__ENST00000522207.1_1_8:86351138-86354561:+|nuORF	REV__ENST00000522207.1_1_8:86351138-86354561:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.34326171875	2	589.343646	1176.67274	-2.1868	-0.0012888	0.96983	0.00057157	-1.217	-0.00071722	589.3441619466173	148.26	4.549	146.82	145.53	150.08	-1.435					304	95	6	0	0	0	0.73378	1	14793	14793		26.693	1.2427	1	385010	+		27068	27081	22151	22178	30264	30264					0.09147016757151505
KVTIKKPTV	9	Unmodified	_KVTIKKPTV_					0	0	0		tr|A0A7D6VMT6|A0A7D6VMT6_9CLOTCelldivisionproteinSepFOS=ClostridiumintestinaleOX=36845GN=sepFPE=3SV=1	tr|A0A7D6VMT6|A0A7D6VMT6_9CLOTCelldivisionproteinSepFOS=ClostridiumintestinaleOX=36845GN=sepFPE=3SV=1	tr|A0A7D6VMT6|A0A7D6VMT6_9CLOTCelldivisionproteinSepFOS=ClostridiumintestinaleOX=36845GN=sepFPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	507.3402404785156	2	507.33951	1012.66447	0.015586	7.9076E-06	0.13772	6.9871E-05	0.15331	7.7779E-05	507.3393906649797	64.61	0.58216	64.61	64.334	64.916	0					28	13	3	0	0	0	0.38969	1	5882	5882		52.937	3.4952	1	981590			27069	34668	22152	22179	30265	30265					0.15864069787789958
KVTILSTLI	9	Unmodified	_KVTILSTLI_					0	0	0		tr|A0A7D6ZHZ7|A0A7D6ZHZ7_9CLOTHemeNO-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01900PE=4SV=1	tr|A0A7D6ZHZ7|A0A7D6ZHZ7_9CLOTHemeNO-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01900PE=4SV=1	tr|A0A7D6ZHZ7|A0A7D6ZHZ7_9CLOTHemeNO-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01900PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	494.3276062011719	2	494.326068	986.637583	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.243	1	20.243	19.743	20.743	0								0	0	0	0.18042	1	12	12		34.173	0	1				27070	35596	22153	22180	30266	30266					0.14372961176616172
KVTKEEKPE	9	Unmodified	_KVTKEEKPE_					0	0	0			REV__tr|A0A553SQB5|A0A553SQB5_NIACIProtein-glutamatemethylesterase/protein-glutamineglutaminaseOS=NialliacirculansOX=1397GN=cheBPE=3SV=1	REV__tr|A0A553SQB5|A0A553SQB5_NIACIProtein-glutamatemethylesterase/protein-glutamineglutaminaseOS=NialliacirculansOX=1397GN=cheBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.323486328125	2	544.303321	1086.59209	-0.44753	-0.00024359	0.16884	9.1901E-05	-0.27869	-0.00015169	544.3043233229574	75.316	0.4798	72.085	71.726	72.205	-3.2308					10	9	2	0	0	0	0.027462	1	5914	5914		19.997	0	1	28004	+		27071	30620	22154	22181	30267	30267					0.05225690923566617
KVTKEPAALS	10	Unmodified	_KVTKEPAALS_					0	0	0			REV__ENST00000427497.3_1_17:17106083-17118331:-|nuORF	REV__ENST00000427497.3_1_17:17106083-17118331:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.2803344726562	2	522.308406	1042.60226	-0.69843	-0.0003648	-1.4905	-0.00077852	-2.189	-0.0011433	522.3067059970285	76.594	0.95348	73.655	73.412	74.366	-2.9389					37	19	3	0	0	0	0.026867	1	6117	6117		28.081	2.5074	1	112460	+		27072	25680	22155	22182	30268	30268					0.0826629864880033
KVTKEPAALS	10	Unmodified	_KVTKEPAALS_					0	0	0			REV__ENST00000427497.3_1_17:17106083-17118331:-|nuORF	REV__ENST00000427497.3_1_17:17106083-17118331:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	522.308406	1042.60226	-0.69934	-0.00036527	1.8483	0.00096537	1.1489	0.0006001	522.3081610438857	75.692	0.81702	73.281	72.969	73.786	-2.4106	-0.23884	0.0004056	NaN	56.434	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44497	+		27073	25680	22155	22182							0.0826629864880033
KVTLLNYV	8	Unmodified	_KVTLLNYV_					0	0	0			REV__nc|ENSG00000126838|P20742-2|PZP	REV__nc|ENSG00000126838|P20742-2|PZP	MULTI-MSMS	OvCa9_classI_Rep3	3	475.29022216796875	2	475.289485	948.564418	0.11408	5.4223E-05	-0.31457	-0.00014951	-0.20049	-9.5289E-05	475.2892422104888	96.735	1.571	94.906	94.571	96.142	-1.8286					87	30	4	0	0	0	0.67745	1	6398	6398		47.916	1.9636	1	851960	+		27074	28835	22156	22183	30269	30269					0.08807832453987885
KVTLLVFET	9	Unmodified	_KVTLLVFET_					0	0	0			REV__nc|ENSG00000171931|Q5XX13-3|FBXW10	REV__nc|ENSG00000171931|Q5XX13-3|FBXW10	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.2999267578125	2	525.3157	1048.61685	-0.66261	-0.00034808	-2.9009	-0.0015239	-3.5635	-0.0018719	525.3141245086714	58.948	0.69069	58.948	58.613	59.304	0					37	17	3	0	0	0	0.027462	1	5020	5020		15.642	7.9515	1	2463800	+		27075	21658	22157	22184	30270	30270					0.09448370796940253
KVTNKEPLL	9	Unmodified	_KVTNKEPLL_					0	0	0		tr|A0A553SM20|A0A553SM20_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21750PE=4SV=1	tr|A0A553SM20|A0A553SM20_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21750PE=4SV=1	tr|A0A553SM20|A0A553SM20_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21750PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.8173217773438	2	521.318774	1040.623	-0.82892	-0.00043213	-1.2891	-0.00067201	-2.118	-0.0011041	521.8189432756967	121.23	1.4357	119.89	119.59	121.03	-1.3479					61	27	4	0	0	0	0.48047	1	11448	11448		44.377	1.5129	1	81220			27076	33785	22158	22185	30271	30271					0.10430889028475576
KVTNKEPLL	9	Unmodified	_KVTNKEPLL_					0	0	0		tr|A0A553SM20|A0A553SM20_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21750PE=4SV=1	tr|A0A553SM20|A0A553SM20_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21750PE=4SV=1	tr|A0A553SM20|A0A553SM20_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21750PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.318774	1040.623	-1.0175	-0.00053042	-0.5971	-0.00031128	-1.6146	-0.0008417	521.3191684045872	120.06	0.98758	119.89	119.55	120.53	-0.17138	0.0030074	0.001313	NaN	44.377	53	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52170			27077	33785	22158	22185							0.10430889028475576
KVTNKEPLL	9	Unmodified	_KVTNKEPLL_					0	0	0		tr|A0A553SM20|A0A553SM20_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21750PE=4SV=1	tr|A0A553SM20|A0A553SM20_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21750PE=4SV=1	tr|A0A553SM20|A0A553SM20_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21750PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	521.318774	1040.623	1.2686	0.00066132	-3.0798	-0.0016056	-1.8113	-0.00094425	521.3179054343296	120.92	1.3999	119.89	119.61	121.01	-1.0271	0.00075713	-0.0012756	NaN	44.377	56	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75735			27078	33785	22158	22185							0.10430889028475576
KVTPKGVTE	9	Unmodified	_KVTPKGVTE_					0	0	0		tr|A0A553SHC2|A0A553SHC2_NIACIDNA-directedRNApolymerasesubunitbetaOS=NialliacirculansOX=1397GN=rpoBPE=3SV=1	tr|A0A553SHC2|A0A553SHC2_NIACIDNA-directedRNApolymerasesubunitbetaOS=NialliacirculansOX=1397GN=rpoBPE=3SV=1	tr|A0A553SHC2|A0A553SHC2_NIACIDNA-directedRNApolymerasesubunitbetaOS=NialliacirculansOX=1397GN=rpoBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2633056640625	2	479.782025	957.549496	0.063575	3.0502E-05	2.2679	0.0010881	2.3315	0.0011186	479.7826104582343	73.52	0.51134	73.52	73.317	73.829	0					19	12	2	0	0	0	0.027433	1	7194	7194		42.396	21.449	1	777890			27079	33256	22159	22186	30272	30272					0.0690234058599799
KVTPPSKVTPP	11	Unmodified	_KVTPPSKVTPP_					0	0	0			REV__ENSG00000138813|ENST00000326581|C4orf17	REV__ENSG00000138813|ENST00000326581|C4orf17	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8431396484375	2	575.845156	1149.67576	-2.8608	-0.0016474	-0.58729	-0.00033819	-3.4481	-0.0019856	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.72324	1	14808	14808		21.686	2.3258	1	356230	+		27080	19578	22160	22187	30273	30273					0.10690847091291289
KVTRKKQP	8	Unmodified	_KVTRKKQP_					0	0	0		L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|182|3|sense	L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|182|3|sense	L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|182|3|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.8203125	2	492.819276	983.623999	-0.15633	-7.7044E-05	-0.23118	-0.00011393	-0.38752	-0.00019098	492.8190082291614	62.974	3.1431	59.501	59.195	62.338	-3.4731					139	64	4	0	0	0	0.65062	1	4400	4400		53.351	7.3995	1	1132000			27081	14744	22161	22188	30274	30274					0.13153148188030173
KVTRMGLLV	9	Unmodified	_KVTRMGLLV_					0	0	0		ENSG00000168807|ENST00000336278|SNTB2	ENSG00000168807|ENST00000336278|SNTB2	ENSG00000168807|ENST00000336278|SNTB2	MULTI-MSMS	OvCa99_classI_Rep5	1	508.8191223144531	2	508.817887	1015.62122	0.50607	0.0002575	-0.34102	-0.00017352	0.16505	8.3978E-05	508.8174736785243	72.431	0.94765	72.431	72.165	73.113	0					54	23	4	0	0	0	0.22035	1	7046	7046		72.879	12.585	1	4116200			27082	6944	22162	22189	30275	30275					0.11403556738878251
KVTSIAVTN	9	Unmodified	_KVTSIAVTN_					0	0	0			REV__ENSG00000183354|ENST00000399933|KIAA2026	REV__ENSG00000183354|ENST00000399933|KIAA2026	MULTI-SECPEP	OvCa99_classI_Rep5	1	466.26519775390625	2	466.7742	931.533846	0.50924	0.0002377	-0.41719	-0.00019474	0.092045	4.2964E-05	466.7737708976566	67.32	0.27222	67.32	67.136	67.408	0					10	6	2	0	0	0	0.027462	1	6288	6288		47.657	12.039	1	550580	+		27083	22359	22163	22190	30276	30276					0.06534054068936257
KVTSIAVTN	9	Unmodified	_KVTSIAVTN_					0	0	0			REV__ENSG00000183354|ENST00000399933|KIAA2026	REV__ENSG00000183354|ENST00000399933|KIAA2026	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	466.7742	931.533846	-0.66909	-0.00031231	-0.54723	-0.00025543	-1.2163	-0.00056775	466.77383771795525	70.993	0.47813	67.536	67.347	67.825	-3.4563	0.10804	-6.7846E-05	NaN	44.377	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17821	+		27084	22359	22163	22190							0.06534054068936257
KVTSISIFL	9	Unmodified	_KVTSISIFL_					0	0	0			REV__tr|A0A7D7A155|A0A7D7A155_9CLOTHTHluxR-typedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14280PE=4SV=1	REV__tr|A0A7D7A155|A0A7D7A155_9CLOTHTHluxR-typedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14280PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.31103515625	2	504.310418	1006.60628	-0.31749	-0.00016011	0.20268	0.00010221	-0.11481	-5.7899E-05	504.3102186301609	122.18	1.1611	120.82	120.44	121.6	-1.3666					60	22	5	0	0	0	0.33652	1	11524	11524		58.782	0	1	126760	+		27085	32473	22164	22191	30277	30277					0.10324388142510088
KVTSSKGT	8	Unmodified	_KVTSSKGT_					0	0	0			REV__tr|A0A7D6VVP1|A0A7D6VVP1_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04180PE=4SV=1	REV__tr|A0A7D6VVP1|A0A7D6VVP1_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04180PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	404.2329406738281	2	404.232168	806.449782	1.4985	0.00060574	0.40137	0.00016225	1.8999	0.00076799	404.2322157005619	134.25	0.93222	134.02	133.46	134.39	-0.22697					47	18	3	0	0	0	0.75805	1	13266	13266		19.997	0.6368	1	139150	+		27086	31729	22165	22192	30278	30278					0.03881522972062612
KVTVIAKNI	9	Unmodified	_KVTVIAKNI_					0	0	0		tr|A0A7D6VQ77|A0A7D6VQ77_9CLOTRibosomehibernationpromotingfactorOS=ClostridiumintestinaleOX=36845GN=raiAPE=3SV=1	tr|A0A7D6VQ77|A0A7D6VQ77_9CLOTRibosomehibernationpromotingfactorOS=ClostridiumintestinaleOX=36845GN=raiAPE=3SV=1	tr|A0A7D6VQ77|A0A7D6VQ77_9CLOTRibosomehibernationpromotingfactorOS=ClostridiumintestinaleOX=36845GN=raiAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2214660644531	2	493.32386	984.633166	-0.45273	-0.00022334	0.2944	0.00014523	-0.15833	-7.8108E-05	493.32379708552185	35.818	0.46042	35.818	35.614	36.074	0					22	9	4	0	0	0	0.027446	1	1818	1818		35.152	6.0025	1	382560			27087	34827	22166	22193	30279	30279					0.14023496753691234
KVTVVFGNA	9	Unmodified	_KVTVVFGNA_					0	0	0		ENST00000555200.1_1_14:77565532-77566285:+|nuORF	ENST00000555200.1_1_14:77565532-77566285:+|nuORF	ENST00000555200.1_1_14:77565532-77566285:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	467.76959228515625	2	467.77146	933.528367	0.35334	0.00016528	-3.454	-0.0016157	-3.1006	-0.0014504	467.76972173276937	30.873	0.8863	28.163	27.903	28.789	-2.7097					36	17	3	0	0	0	0.64427	1	892	892		26.693	1.2427	1	69508			27088	13642	22167	22194	30280	30280					0.05894375277136987
KVVAGAKVAK	10	Unmodified	_KVVAGAKVAK_					0	0	0		ENSG00000173599|ENST00000393960|PC;ENST00000528224.1_1_11:66616372-66617354:-|nuORF	ENSG00000173599|ENST00000393960|PC	ENSG00000173599|ENST00000393960|PC	MULTI-MSMS	OvCa9_classI_Rep2	2	485.8224792480469	2	485.824027	969.633501	3.8206	0.0018561	-4.2045	-0.0020427	-0.38393	-0.00018652	485.8218265833188	25.048	0.19587	22.338	22.233	22.428	-2.7097					7	4	2	0	0	0	0.74374	1	202	202		25.574	8.2091	1	15576			27089	7394	22168	22195	30281	30281					0.14746916473563942
KVVALVHAV	9	Unmodified	_KVVALVHAV_					0	0	0		nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;nc|ENSG00000008517|P24001-7|IL32	nc|ENSG00000008517|P24001-5|IL32	nc|ENSG00000008517|P24001-5|IL32	MULTI-MSMS	OvCa99_classI_Rep5	1	468.3066711425781	2	468.30547	934.596387	0.25979	0.00012166	-0.049135	-2.301E-05	0.21065	9.865E-05	468.3053079789557	62.338	1.2146	62.338	62.081	63.296	0					69	29	4	0	0	0	0.037679	2	5530	5530;5561		128.82	76.517	1	5708800			27090	923	22169	22196	30282;30283	30282					0.12647244927791235
KVVARYLGH	9	Unmodified	_KVVARYLGH_					0	0	0		tr|A0A553SMJ9|A0A553SMJ9_NIACIDUF1906domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22600PE=4SV=1	tr|A0A553SMJ9|A0A553SMJ9_NIACIDUF1906domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22600PE=4SV=1	tr|A0A553SMJ9|A0A553SMJ9_NIACIDUF1906domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22600PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	521.81201171875	2	521.811451	1041.60835	-0.83564	-0.00043605	3.6163	0.001887	2.7806	0.001451	521.8134554363941	67.923	3.082	65.262	64.842	67.924	-2.661					124	61	3	0	0	0	0.61208	1	5337	5337		30.504	2.6214	1	4500900			27091	33840	22170	22197	30284	30284					0.0892086167098114
KVVDVVRNL	9	Unmodified	_KVVDVVRNL_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1;MX1|p.Y275Ifs*40|1|0.05|ENSG00000157601|chr21:41441807-41441808|-/ATAATGGGCCACACACAGTGGCTCAGTCCTA|frameshift_variant	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	OvCa99_classI_Rep5	1	521.3258056640625	2	521.324391	1040.63423	0.0053125	2.7696E-06	0.50268	0.00026206	0.50799	0.00026483	521.3243234627935	72.216	0.93448	72.216	71.749	72.684	0					53	22	4	0	0	0	0.14445	1	7013	7013		85.862	21.655	1	2729400			27092	5904	22171	22198	30285	30285					0.11553711122610366
KVVEDGILKLR	11	Unmodified	_KVVEDGILKLR_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;CTNNA1-KDM3B|1|fusion	ENSG00000044115|ENST00000302763|CTNNA1;CTNNA1-KDM3B|1|fusion	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	OvCa99_classI_Rep5	1	635.4000854492188	2	635.398087	1268.78162	-0.17446	-0.00011085	0.11155	7.088E-05	-0.062909	-3.9972E-05	635.3980894634163	70.382	1.5379	70.382	70.13	71.668	0					91	38	5	0	0	0	0.24327	1	6732	6732		74.165	17.731	1	13258000			27093	1131;693	22172	22199	30286	30286					0.15798182936759986
KVVEERVIN	9	Unmodified	_KVVEERVIN_					0	0	0			REV__nc|ENSG00000164283|Q9NQ30-2|ESM1	REV__nc|ENSG00000164283|Q9NQ30-2|ESM1	MSMS	OvCa99_classI_Rep5	1	543.3203735351562	2	543.319306	1084.62406	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.513	1	60.513	60.013	61.013	0								0	0	0	0.027021	1	5285	5285		118.74	6.3322	1		+		27094	20965	22173	22200	30287	30287					0.08513103397399391
KVVEIFDPEI	10	Unmodified	_KVVEIFDPEI_					0	0	0		tr|A0A7D6VY68|A0A7D6VY68_9CLOT6-phospho-alpha-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15635PE=3SV=1	tr|A0A7D6VY68|A0A7D6VY68_9CLOT6-phospho-alpha-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15635PE=3SV=1	tr|A0A7D6VY68|A0A7D6VY68_9CLOT6-phospho-alpha-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15635PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	594.8287353515625	2	594.829172	1187.64379	-1.0911	-0.00064901	-0.95289	-0.00056681	-2.044	-0.0012158	594.8287093087835	76.656	1.4596	74.802	74.518	75.977	-1.854					101	27	5	0	0	0	0.45822	1	6346	6346		60.118	0	1	1003200			27095	35320	22174	22201	30288	30288					0.05747434617478575
KVVENALKV	9	Unmodified	_KVVENALKV_					0	0	0		ENSG00000086200|ENST00000325324|IPO11;nc|ENSG00000086200|Q9UI26-2|IPO11	ENSG00000086200|ENST00000325324|IPO11	ENSG00000086200|ENST00000325324|IPO11	MULTI-MSMS	OvCa9_classI_Rep3	3	500.31329345703125	2	500.313492	998.612431	0.37155	0.00018589	-0.7555	-0.00037799	-0.38395	-0.00019209	500.31302313941114	128.99	2.6573	127.9	127.57	130.22	-1.0933					135	53	5	0	0	0	0.55011	1	10304	10304		37.812	0	1	747300			27096	1749	22175	22202	30289	30289					0.11306906374034043
KVVFAGKIVP	10	Unmodified	_KVVFAGKIVP_					0	0	0		ENST00000518921.1_1_8:63056787-63057258:-|nuORF	ENST00000518921.1_1_8:63056787-63057258:-|nuORF	ENST00000518921.1_1_8:63056787-63057258:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.2942504882812	2	529.342052	1056.66955	-1.8921	-0.0010016	-2.3017	-0.0012184	-4.1938	-0.00222	529.3405876497148	43.98	1.0012	40.973	40.744	41.745	-3.0074					40	19	3	0	0	0	0.027056	1	2240	2240		27.882	19.651	1	102800			27097	13076	22176	22203	30290	30290					0.14348373650409485
KVVFAGKIVP	10	Unmodified	_KVVFAGKIVP_					0	0	0		ENST00000518921.1_1_8:63056787-63057258:-|nuORF	ENST00000518921.1_1_8:63056787-63057258:-|nuORF	ENST00000518921.1_1_8:63056787-63057258:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	529.342052	1056.66955	-0.13197	-6.9857E-05	-3.9381	-0.0020846	-4.07	-0.0021544	529.3397968540999	43.735	0.84468	41.025	40.758	41.603	-2.7097	0.026102	-0.0006084	NaN	27.882	25	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42322			27098	13076	22176	22203							0.14348373650409485
KVVHKSFV	8	Unmodified	_KVVHKSFV_					0	0	0		ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	MULTI-MSMS	OvCa9_classI_Rep2	2	472.2875061035156	2	472.28982	942.565087	-3.3722	-0.0015927	-0.90359	-0.00042676	-4.2758	-0.0020194	472.2892568382278	150.85	1.4757	150.62	150.22	151.7	-0.22697					85	29	4	0	0	0	0.75915	1	15304	15304		20.482	1.1219	1	396600			27099	3659	22177	22204	30291	30291					0.09150671893701201
KVVICQRVS	9	Unmodified	_KVVICQRVS_					0	0	0		nc|ENSG00000117152|P49798-5|RGS4;nc|ENSG00000117152|P49798-2|RGS4;ENSG00000117152|ENST00000367909|RGS4;nc|ENSG00000117152|P49798-3|RGS4;nc|ENSG00000117152|P49798-4|RGS4	nc|ENSG00000117152|P49798-5|RGS4	nc|ENSG00000117152|P49798-5|RGS4	MULTI-MSMS	OvCa9_classI_Rep2	2	516.3016967773438	2	516.305144	1030.59573	-1.364	-0.00070426	-2.6442	-0.0013652	-4.0083	-0.0020695	516.3037096883031	61.9	2.366	59.14	58.568	60.934	-2.7593					127	45	4	0	0	0	0.56889	1	4668	4668		35.618	1.4457	1	1077700			27100	3240	22178	22205	30292	30292					0.08166082216439463
KVVILGYRCV	10	Unmodified	_KVVILGYRCV_					0	0	0		RHEBL1|p.L58Sfs*9|1|0.03|ENSG00000167550|chr12:49066989-49066990|-/G|frameshift_variant;nc|ENSG00000167550|Q8TAI7-2|RHEBL1;RHEBL1|p.H91Ifs*26|1|0.05|ENSG00000167550|chr12:49066623-49066623|G/-|frameshift_variant;RHEBL1|p.Y100Nfs*18|1|0.06|ENSG00000167550|chr12:49066510-49066511|-/TT|frameshift_variant;ENSG00000167550|ENST00000301068|RHEBL1	RHEBL1|p.L58Sfs*9|1|0.03|ENSG00000167550|chr12:49066989-49066990|-/G|frameshift_variant	RHEBL1|p.L58Sfs*9|1|0.03|ENSG00000167550|chr12:49066989-49066990|-/G|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	575.3465576171875	2	575.344269	1148.67399	0.41999	0.00024164	3.1112	0.00179	3.5312	0.0020317	575.345898604362	159.91	1.5859	159.91	159.52	161.11	0					89	31	5	0	0	0	0.66721	1	18751	18751		34.173	3.8548	1	1545400			27101	6804	22179	22206	30293	30293					0.10559514801661862
KVVITRLN	8	Unmodified	_KVVITRLN_					0	0	0		ENST00000415623.1_1_10:70184604-70184751:+|nuORF	ENST00000415623.1_1_10:70184604-70184751:+|nuORF	ENST00000415623.1_1_10:70184604-70184751:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	471.8079833984375	2	471.808377	941.6022	-0.71288	-0.00033634	0.595	0.00028073	-0.11787	-5.5613E-05	471.8085684718405	67.366	1.6796	64.705	64.347	66.027	-2.661					77	33	3	0	0	0	0.62474	1	5262	5262		58.782	9.3404	1	422510			27102	11591	22180	22207	30294	30294					0.12906343439465218
KVVKIEGDFV	10	Unmodified	_KVVKIEGDFV_					0	0	0		tr|A0A553SUP7|A0A553SUP7_NIACICupindomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04660PE=4SV=1	tr|A0A553SUP7|A0A553SUP7_NIACICupindomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04660PE=4SV=1	tr|A0A553SUP7|A0A553SUP7_NIACICupindomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04660PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.32958984375	2	567.331882	1132.64921	-2.3399	-0.0013275	-1.3687	-0.0007765	-3.7086	-0.002104	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.75313	2	14553	14483;14553		24.519	1.4767	1	241060			27103	34630	22181	22208	30295;30296	30296					0.08819158199935373
KVVKMRVEF	9	Unmodified	_KVVKMRVEF_					0	0	0			REV__nc|ENSG00000025039|Q9NQL2-2|RRAGD	REV__nc|ENSG00000025039|Q9NQL2-2|RRAGD	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.7644653320312	2	568.336444	1134.65834	1.5155	0.0008613	3.2088	0.0018237	4.7242	0.002685	568.3392967640538	149.4	0.23596	149.4	149.21	149.44	0					5	4	2	0	0	0	0.027455	1	17475	17475		34.173	0	1	8362.4	+		27104	16565	22182	22209	30297	30297					0.09639228284618184
KVVLFGPPGA	10	Unmodified	_KVVLFGPPGA_					0	0	0		tr|A0A7D6ZH12|A0A7D6ZH12_9CLOTAdenylatekinaseOS=ClostridiumintestinaleOX=36845GN=adkPE=3SV=1	tr|A0A7D6ZH12|A0A7D6ZH12_9CLOTAdenylatekinaseOS=ClostridiumintestinaleOX=36845GN=adkPE=3SV=1	tr|A0A7D6ZH12|A0A7D6ZH12_9CLOTAdenylatekinaseOS=ClostridiumintestinaleOX=36845GN=adkPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3240661621094	2	492.797478	983.580402	-0.38584	-0.00019014	0.27633	0.00013618	-0.10951	-5.3965E-05	492.79647450824024	78.949	0.39	76.609	76.315	76.705	-2.3399					11	7	2	0	0	0	0.026669	1	4200	4200		30.504	7.4612	1	95235			27105	35559	22183	22210	30298	30298					0.08795538690901594
KVVLPWLL	8	Unmodified	_KVVLPWLL_					0	0	0			REV__ENSG00000099338|ENST00000409235|CATSPERG	REV__ENSG00000099338|ENST00000409235|CATSPERG	MULTI-MSMS	OvCa9_classI_Rep3	3	484.3187255859375	2	484.320589	966.626624	-0.71351	-0.00034557	-3.8468	-0.0018631	-4.5603	-0.0022087	484.318588992095	115.68	1.0854	114.64	114.35	115.44	-1.0414					53	21	3	0	0	0	0.72922	1	8618	8618		37.028	3.5129	1	180240	+		27106	17322	22184	22211	30299	30299					0.14197603592981523
KVVLVLLLV	9	Unmodified	_KVVLVLLLV_					0	0	0		ENSG00000212127|ENST00000537503|TAS2R14	ENSG00000212127|ENST00000537503|TAS2R14	ENSG00000212127|ENST00000537503|TAS2R14	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.3354797363281	2	498.364996	994.715439	1.2098	0.00060293	0.66821	0.00033301	1.878	0.00093594	498.36602751979245	123.86	0.30667	122.82	122.62	122.92	-1.0377					7	5	2	0	0	0	0.027433	1	9556	9556		38.806	13.356	1	10281			27107	9108	22185	22212	30300	30300					0.21787018832662852
KVVMELKKD	9	Unmodified	_KVVMELKKD_					0	0	0			REV__ENSG00000115020|ENST00000264380|PIKFYVE	REV__ENSG00000115020|ENST00000264380|PIKFYVE	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3168334960938	2	545.32046	1088.62637	-2.8527	-0.0015556	-4.0579	-0.0022129	-6.9106	-0.0037685	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.62335	1	11951	11951		29.17	1.2878	1	337600	+		27108	18214	22186	22213	30301	30301					0.08559815810804139
KVVMKELRL	9	Unmodified	_KVVMKELRL_					0	0	0			REV__ENST00000448052.1_1_1:84551619-84551913:+|nuORF	REV__ENST00000448052.1_1_1:84551619-84551913:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	558.3508911132812	2	558.352094	1114.68964	-1.3961	-0.00077949	-2.557	-0.0014277	-3.953	-0.0022072	558.3506628523401	83.366	2.2805	81.079	80.639	82.919	-2.2867					139	47	4	0	0	0	0.1804	1	4754	4754		79.713	10.926	1	1662600	+		27109	25928	22187	22214	30302	30302					0.1368780131872427
KVVNIVPVI	9	Unmodified	_KVVNIVPVI_					0	0	0		nc|ENSG00000184640|Q9UHD8-7|SEPTIN9;nc|ENSG00000184640|Q9UHD8-2|SEPTIN9;nc|ENSG00000184640|Q9UHD8-5|SEPTIN9;ENSG00000184640|ENST00000427177|SEPTIN9;NCAPD2-SEPT9|1|fusion;nc|ENSG00000184640|Q9UHD8-4|SEPTIN9;nc|ENSG00000184640|Q9UHD8-9|SEPTIN9;ENST00000592481.5_1_17:75447336-75492345:+|nuORF;BCAP29-SEPT9|1|fusion;nc|ENSG00000184640|Q9UHD8-3|SEPTIN9;nc|ENSG00000184640|Q9UHD8-8|SEPTIN9	nc|ENSG00000184640|Q9UHD8-7|SEPTIN9	nc|ENSG00000184640|Q9UHD8-7|SEPTIN9	MULTI-MSMS	OvCa99_classI_Rep5	1	490.8296203613281	2	490.828778	979.643003	1.3526	0.00066392	0.29972	0.00014711	1.6524	0.00081103	490.8287973144604	109.04	0.56983	109.04	108.8	109.37	0					22	12	2	0	0	0	0.19716	1	12350	12350		76.847	8.3619	1	500620			27110	8179	22188	22215	30303	30303					0.15236684759088348
KVVNKIGQV	9	Unmodified	_KVVNKIGQV_					0	0	0		tr|A0A7D6ZIP8|A0A7D6ZIP8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07925PE=4SV=1	tr|A0A7D6ZIP8|A0A7D6ZIP8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07925PE=4SV=1	tr|A0A7D6ZIP8|A0A7D6ZIP8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07925PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.81732177734375	2	492.813659	983.612765	-0.86983	-0.00042866	-0.74186	-0.0003656	-1.6117	-0.00079426	492.8133681784795	61.74	0.66582	58.981	58.62	59.286	-2.7593					25	12	4	0	0	0	0.027417	1	4618	4618		65.803	0	1	150340			27111	35623	22189	22216	30304	30304					0.12030326093884014
KVVNQRQT	8	Unmodified	_KVVNQRQT_					0	0	0			REV__nc|ENSG00000005175|Q9H6T3-3|RPAP3	REV__nc|ENSG00000005175|Q9H6T3-3|RPAP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.7800598144531	2	486.78289	971.551228	-0.68107	-0.00033153	0.57554	0.00028016	-0.10554	-5.1373E-05	486.78315591645753	37.874	0.40023	37.874	37.714	38.114	0					13	8	2	0	0	0	0.028476	1	2090	2090		29.15	0	1	129970	+		27112	16394	22190	22217	30305	30305					0.06431394394610379
KVVQFTPLN	9	Unmodified	_KVVQFTPLN_					0	0	0		tr|A0A7D6ZF91|A0A7D6ZF91_9CLOTFlagellarhook-lengthcontrolproteinFliKOS=ClostridiumintestinaleOX=36845GN=HZF06_16855PE=4SV=1	tr|A0A7D6ZF91|A0A7D6ZF91_9CLOTFlagellarhook-lengthcontrolproteinFliKOS=ClostridiumintestinaleOX=36845GN=HZF06_16855PE=4SV=1	tr|A0A7D6ZF91|A0A7D6ZF91_9CLOTFlagellarhook-lengthcontrolproteinFliKOS=ClostridiumintestinaleOX=36845GN=HZF06_16855PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3034057617188	2	523.305667	1044.59678	-0.69596	-0.0003642	-3.2951	-0.0017244	-3.9911	-0.0020886	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.60342	1	13847	13847		31.53	3.6476	1	130240			27113	35503	22191	22218	30306	30306					0.0762661985700106
KVVRGLPDV	9	Unmodified	_KVVRGLPDV_					0	0	0		ENSG00000142661|ENST00000374434|MYOM3;nc|ENSG00000142661|Q5VTT5-3|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.2522277832031	2	491.805834	981.597115	-0.33642	-0.00016546	-0.07599	-3.7372E-05	-0.41241	-0.00020283	491.80539386596496	56.47	0.19963	56.47	56.382	56.581	0					6	4	2	0	0	0	0.027462	1	4675	4675		19.997	6.2214	1	47283			27114	4988	22192	22219	30307	30307					0.10558039576835654
KVVRGRIWGP	10	Unmodified	_KVVRGRIWGP_					0	0	0		ENST00000463419.1_1_14:51273386-51297283:-|nuORF	ENST00000463419.1_1_14:51273386-51297283:-|nuORF	ENST00000463419.1_1_14:51273386-51297283:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.356201171875	2	584.359099	1166.70365	-1.7162	-0.0010029	-2.8243	-0.0016504	-4.5405	-0.0026533	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.78463	1	14398	14398		20.947	1.8434	1	833330			27115	12224	22193	22220	30308	30308					0.1269621486203505
KVVSESDKED	10	Unmodified	_KVVSESDKED_					0	0	0		ENSG00000183644|ENST00000375618|HOATZ;nc|ENSG00000183644|Q6PI97-3|HOATZ	ENSG00000183644|ENST00000375618|HOATZ	ENSG00000183644|ENST00000375618|HOATZ	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.329345703125	2	568.2775	1134.54045	-0.87714	-0.00049846	-2.3823	-0.0013538	-3.2595	-0.0018523	568.2761256091773	146.61	0.61154	145.17	145.02	145.63	-1.4357					13	11	2	0	0	0	0.026906	1	14392	14392		49.536	6.6718	1	9670.2			27116	8092	22194	22221	30309	30309					-0.02144097560994851
KVVSGFFRKAI	11	Unmodified	_KVVSGFFRKAI_					0	0	0		CCR8|p.Y113Ffs*19|1|0.04|ENSG00000179934|chr3:39332668-39332669|-/TTAGGAAAGCA|frameshift_variant	CCR8|p.Y113Ffs*19|1|0.04|ENSG00000179934|chr3:39332668-39332669|-/TTAGGAAAGCA|frameshift_variant	CCR8|p.Y113Ffs*19|1|0.04|ENSG00000179934|chr3:39332668-39332669|-/TTAGGAAAGCA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	417.9170837402344	3	417.923919	1250.74993	-1.1534	-0.00048205	3.9647	0.0016569	2.8113	0.0011749	417.92525160390227	54.225	0.30725	50.977	50.825	51.132	-3.2474					7	5	2	0	0	0	0.026068	1	3351	3351		21.78	2.5177	1	10036			27117	201	22195	22222	30310	30310					0.1345823497345009
KVVTEKPL	8	Unmodified	_KVVTEKPL_					0	0	0			REV__tr|A0A7D6ZGT4|A0A7D6ZGT4_9CLOTNADPH-dependentglutamatesynthaseOS=ClostridiumintestinaleOX=36845GN=gltAPE=4SV=1	REV__tr|A0A7D6ZGT4|A0A7D6ZGT4_9CLOTNADPH-dependentglutamatesynthaseOS=ClostridiumintestinaleOX=36845GN=gltAPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.280029296875	2	457.289485	912.564418	-0.14171	-6.4803E-05	0.087944	4.0216E-05	-0.053766	-2.4587E-05	457.2893176601271	76.447	0.9958	73.508	73.175	74.171	-2.9389					27	20	2	0	0	0	0.028476	1	6052	6052		35.618	0	1	33574	+		27118	32008	22196	22223	30311	30311					0.10463832454001931
KVVTEKPL	8	Unmodified	_KVVTEKPL_					0	0	0			REV__tr|A0A7D6ZGT4|A0A7D6ZGT4_9CLOTNADPH-dependentglutamatesynthaseOS=ClostridiumintestinaleOX=36845GN=gltAPE=4SV=1	REV__tr|A0A7D6ZGT4|A0A7D6ZGT4_9CLOTNADPH-dependentglutamatesynthaseOS=ClostridiumintestinaleOX=36845GN=gltAPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	457.289485	912.564418	0.33687	0.00015405	-0.41244	-0.00018861	-0.07557	-3.4557E-05	457.28924350911046	75.518	0.66811	73.664	73.219	73.887	-1.854	0.077968	-0.00016301	NaN	35.618	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23136	+		27119	32008	22196	22223							0.10463832454001931
KVVVFPLF	8	Unmodified	_KVVVFPLF_					0	0	0		ENST00000368194.7_1_1:157014344-157014518:-|nuORF	ENST00000368194.7_1_1:157014344-157014518:-|nuORF	ENST00000368194.7_1_1:157014344-157014518:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	474.80072021484375	2	474.799489	947.584425	1.3805	0.00065545	0.77234	0.00036671	2.1528	0.0010222	474.7997342623719	143.73	0.89056	143.73	143.46	144.35	0					38	17	3	0	0	0	0.57589	1	16803	16803		69.093	14.328	1	180620			27120	10864	22197	22224	30312	30312					0.10853628184599984
KVVVKFPSN	9	Unmodified	_KVVVKFPSN_					0	0	0			REV__ENSG00000206557|ENST00000383763|TRIM71	REV__ENSG00000206557|ENST00000383763|TRIM71	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.3057556152344	2	509.30821	1016.60187	-1.8721	-0.00095349	-2.4633	-0.0012546	-4.3354	-0.0022081	509.306823448672	147.28	1.1942	145.84	145.53	146.73	-1.4351					49	23	3	0	0	0	0.69123	1	14496	14496		20.947	0.95016	1	91709	+		27121	23241	22198	22225	30313	30313					0.09422923719603205
KVVVKTKTEY	10	Unmodified	_KVVVKTKTEY_					0	0	0		ENSG00000168824|ENST00000621129|NSG1;D4S234E|p.R140Tfs*52|1|0.15|ENSG00000168824|chr4:4417293-4417294|-/GACGCGTGCTCTCAGTGGCCTCTTGTCTTTCAGAACA|frameshift_variant	ENSG00000168824|ENST00000621129|NSG1	ENSG00000168824|ENST00000621129|NSG1	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8565673828125	2	597.858264	1193.70197	-3.1766	-0.0018991	0.037639	2.2503E-05	-3.1389	-0.0018766	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.69073	1	14846	14846		31.53	11.533	1	436470			27122	706	22199	22226	30314	30314					0.11287116262769814
KVVYKIVDK	9	Unmodified	_KVVYKIVDK_					0	0	0		tr|A0A7D6VPU8|A0A7D6VPU8_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20450PE=4SV=1	tr|A0A7D6VPU8|A0A7D6VPU8_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20450PE=4SV=1	tr|A0A7D6VPU8|A0A7D6VPU8_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20450PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	547.323486328125	2	546.344792	1090.67503	0.087892	4.8019E-05	-0.86214	-0.00047103	-0.77425	-0.00042301	546.3440610358494	123.43	0.73827	123.2	122.94	123.68	-0.23193					24	14	3	0	0	0	0.027462	1	11957	11957		47.657	5.2612	1	14874			27123	34800	22200	22227	30315	30315					0.13332052442228814
KVWAYMKI	8	Unmodified	_KVWAYMKI_					0	0	0			REV__ENSG00000114770|ENST00000334444|ABCC5	REV__ENSG00000114770|ENST00000334444|ABCC5	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.7925415039062	2	519.793881	1037.57321	-0.39548	-0.00020557	0.16373	8.5103E-05	-0.23175	-0.00012046	519.7938318646319	121.84	4.0005	120.49	119.9	123.9	-1.3479					152	78	4	0	0	0	0.66704	1	11461	11461		50.025	0	1	769080	+		27124	18201	22201	22228	30316	30316					0.0559248281881537
KVWGTDSMN	9	Unmodified	_KVWGTDSMN_					0	0	0			REV__ENSG00000215009|ENST00000399422|ACSM4	REV__ENSG00000215009|ENST00000399422|ACSM4	MULTI-MSMS	OvCa99_classI_Rep5	1	519.2421264648438	2	519.239667	1036.46478	-0.36621	-0.00019015	-0.27259	-0.00014154	-0.63879	-0.00033169	519.2394697277111	64.899	1.9913	64.899	64.461	66.452	0					129	49	4	0	0	0	0.42676	1	5976	5976		49.442	0	1	24342000	+		27125	23308	22202	22229	30317	30317					-0.05199353222269565
KVWLLREQK	9	Unmodified	_KVWLLREQK_					0	0	0		nc|ENSG00000196562|Q8IWU5-2|SULF2;ENSG00000196562|ENST00000688720|SULF2	nc|ENSG00000196562|Q8IWU5-2|SULF2	nc|ENSG00000196562|Q8IWU5-2|SULF2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	400.2206115722656	3	400.580152	1198.71863	3.0876	0.0012368	-2.7025	-0.0010825	0.38519	0.0001543	400.5790164950794	36.148	1.1973	33.299	32.839	34.037	-2.849					47	23	3	0	0	0	0.027462	1	1179	1179		24.519	13.008	1	114210			27126	8626	22203	22230	30318	30318					0.1272166193934936
KVWQLLLP	8	Unmodified	_KVWQLLLP_					0	0	0			REV__ENST00000465443.5_1_1:45270304-45271347:+|nuORF	REV__ENST00000465443.5_1_1:45270304-45271347:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.8143615722656	2	498.81567	995.616788	-1.804	-0.00089985	-2.8656	-0.0014294	-4.6695	-0.0023292	498.81412167064707	108.42	2.0013	106.69	106.42	108.42	-1.7256					88	38	3	0	0	0	0.52992	1	9948	9948		74.517	14.223	1	538280	+		27127	21804	22204	22231	30319	30319					0.1188041558760915
KVWVQVWHS	9	Unmodified	_KVWVQVWHS_					0	0	0		IKBKB|p.G431V|1|0.07|ENSG00000104365|chr8:42318603-42318603|G/T|missense_variant	IKBKB|p.G431V|1|0.07|ENSG00000104365|chr8:42318603-42318603|G/T|missense_variant	IKBKB|p.G431V|1|0.07|ENSG00000104365|chr8:42318603-42318603|G/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	585.3543701171875	2	584.816733	1167.61891	-0.3322	-0.00019428	3.0482	0.0017827	2.716	0.0015884	584.8216247341603	64.435	0.97546	60.96	60.49	61.466	-3.475					37	19	4	0	0	0	0.027462	1	4557	4557		24.203	0	1	66538			27128	14502	22205	22232	30320	30320					0.04180844325401267
KVYDKAINR	9	Unmodified	_KVYDKAINR_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8184204101562	2	553.819473	1105.62439	-1.2585	-0.00069699	1.1297	0.00062564	-0.12883	-7.1349E-05	553.8199416966768	37.666	0.83724	34.956	34.781	35.618	-2.7097					27	16	3	0	0	0	0.1804	1	1711	1711		79.713	38.934	1	76338			27129	6432	22206	22233	30321	30321					0.07580523117235316
KVYDKAINR	9	Unmodified	_KVYDKAINR_					0	0	0		nc|ENSG00000164190|Q6KC79-2|NIPBL;ENSG00000164190|ENST00000282516|NIPBL;ENST00000514335.1_1_5:37051847-37064632:+|nuORF	nc|ENSG00000164190|Q6KC79-2|NIPBL	nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8204345703125	2	553.819473	1105.62439	0.98332	0.00054458	-1.5302	-0.00084744	-0.54684	-0.00030285	553.8185412682857	37.46	1.5901	34.567	34.293	35.883	-2.8925					57	31	3	0	0	0	0.024645	3	1379	1379;1391;1403		141.52	43.895	1	280790			27130	6432	22206	22233	30322;30323;30324	30322					0.07580523117235316
KVYENYPTY	9	Unmodified	_KVYENYPTY_					0	0	0		ENSG00000124795|ENST00000652689|DEK;nc|ENSG00000124795|P35659-2|DEK	ENSG00000124795|ENST00000652689|DEK	ENSG00000124795|ENST00000652689|DEK	MULTI-MSMS	OvCa9_classI_Rep2	2	588.7833251953125	2	588.782222	1175.54989	-0.59137	-0.00034819	0.69711	0.00041045	0.10574	6.2259E-05	588.7824926583461	69.709	2.2261	67.139	66.515	68.741	-2.5707					112	43	4	0	0	0	0.0076265	2	5548	5548;5555		195.06	78.16	1	1090500			27131	3682	22207	22234	30325;30326	30325					-0.030862844848115856
KVYENYPTY	9	Unmodified	_KVYENYPTY_					0	0	0		ENSG00000124795|ENST00000652689|DEK;nc|ENSG00000124795|P35659-2|DEK	ENSG00000124795|ENST00000652689|DEK	ENSG00000124795|ENST00000652689|DEK	MULTI-MSMS	OvCa9_classI_Rep4_	4	588.783935546875	2	588.782222	1175.54989	-0.90583	-0.00053334	0.78829	0.00046413	-0.11754	-6.9207E-05	588.7826234965701	70.634	2.3318	67.153	66.836	69.168	-3.4812					139	47	5	0	0	0	5.2427E-07	6	5337	5337;5347;5359;5373;5386;5405		261.4	69.77	1	5231000			27132	3682	22207	22234	30327;30328;30329;30330;30331;30332	30327					-0.030862844848115856
KVYENYPTY	9	Unmodified	_KVYENYPTY_					0	0	0		ENSG00000124795|ENST00000652689|DEK;nc|ENSG00000124795|P35659-2|DEK	ENSG00000124795|ENST00000652689|DEK	ENSG00000124795|ENST00000652689|DEK	MULTI-MATCH	OvCa9_classI_Rep3	3		2	588.782222	1175.54989	-0.81164	-0.00047788	0.028091	1.6539E-05	-0.78355	-0.00046134	588.7827384567777	69.725	0.94433	67.005	66.806	67.75	-2.7196	-0.093758	-0.00075714	NaN	261.4	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17233			27133	3682	22207	22234							-0.030862844848115856
KVYFTFVDQM	10	Unmodified	_KVYFTFVDQM_					0	0	0			REV__nc|ENSG00000169851|O60245|PCDH7	REV__nc|ENSG00000169851|O60245|PCDH7	MULTI-SECPEP	OvCa99_classI_Rep5	1	640.266845703125	2	639.315374	1276.6162	2.0637	0.0013194	-3.6491	-0.0023329	-1.5854	-0.0010135	639.3130356695685	126	0.70317	126	125.71	126.42	0					27	14	3	0	0	0	0.026968	1	14540	14540		29.17	13.837	1	306070	+		27134	21488	22208	22235	30333	30333					-0.011047919144175466
KVYGSGEKV	9	Unmodified	_KVYGSGEKV_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;TXNIP|p.E165Rfs*11|1|0.2|ENSG00000265972|chr1:145995010-145995011|-/T|frameshift_variant	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	OvCa99_classI_Rep5	1	483.7662658691406	2	483.766374	965.518196	0.076546	3.703E-05	-0.46042	-0.00022273	-0.38387	-0.0001857	483.7660698733954	32.724	0.63331	32.724	32.503	33.136	0					20	12	2	0	0	0	0.1243	1	1452	1452		90.601	5.6853	1	514670			27135	9525	22209	22236	30334	30334					0.03405767551907957
KVYIHGIL	8	Unmodified	_KVYIHGIL_					0	0	0		tr|A0A553SJ36|A0A553SJ36_NIACI2,3-bisphosphoglycerate-independentphosphoglyceratemutaseOS=NialliacirculansOX=1397GN=gpmIPE=3SV=1	tr|A0A553SJ36|A0A553SJ36_NIACI2,3-bisphosphoglycerate-independentphosphoglyceratemutaseOS=NialliacirculansOX=1397GN=gpmIPE=3SV=1	tr|A0A553SJ36|A0A553SJ36_NIACI2,3-bisphosphoglycerate-independentphosphoglyceratemutaseOS=NialliacirculansOX=1397GN=gpmIPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.21905517578125	2	471.792195	941.569838	-0.1643	-7.7517E-05	-4.2886	-0.0020233	-4.4529	-0.0021008	471.79001133250614	47.647	0.346	47.647	47.422	47.768	0					12	7	2	0	0	0	0.028476	1	3420	3420		23.037	0	1	240910			27136	33460	22210	22237	30335	30335					0.09671556036471429
KVYLEHLKKL	10	Unmodified	_KVYLEHLKKL_					0	0	0		tr|A0A7D6VSA4|A0A7D6VSA4_9CLOTM48familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22205PE=4SV=1	tr|A0A7D6VSA4|A0A7D6VSA4_9CLOTM48familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22205PE=4SV=1	tr|A0A7D6VSA4|A0A7D6VSA4_9CLOTM48familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22205PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	424.2697448730469	3	424.267574	1269.78089	2.1849	0.00092699	3.4621	0.0014688	5.647	0.0023958	424.26901414012116	62.593	1.0533	59.559	59.313	60.366	-3.0339					48	20	4	0	0	0	0.66944	1	2302	2302		33.922	5.8401	1	93226			27137	35004	22211	22238	30336	30336					0.1567938828768547
KVYNIQIRY	9	Unmodified	_KVYNIQIRY_					0	0	0		ENSG00000043462|ENST00000046794|LCP2	ENSG00000043462|ENST00000046794|LCP2	ENSG00000043462|ENST00000046794|LCP2	MULTI-MSMS	OvCa9_classI_Rep2	2	598.8418579101562	2	598.842948	1195.67134	-0.60896	-0.00036467	0.40909	0.00024498	-0.19987	-0.00011969	598.8431054117602	78.025	1.3154	76.235	75.937	77.252	-1.7894					70	25	3	0	0	0	0.22961	1	6517	6517		71.296	23.38	1	379980			27138	1129	22212	22239	30337	30337					0.08133382668370359
KVYNIQIRY	9	Unmodified	_KVYNIQIRY_					0	0	0		ENSG00000043462|ENST00000046794|LCP2	ENSG00000043462|ENST00000046794|LCP2	ENSG00000043462|ENST00000046794|LCP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	598.8441162109375	2	598.842948	1195.67134	0.37279	0.00022324	-0.82113	-0.00049173	-0.44834	-0.00026849	598.8422026768429	79.034	1.2393	76.283	76.038	77.277	-2.7514					62	25	4	0	0	0	0.22961	1	6400	6400		71.296	9.1883	1	608440			27139	1129	22212	22239	30338	30338					0.08133382668370359
KVYNIQIRY	9	Unmodified	_KVYNIQIRY_					0	0	0		ENSG00000043462|ENST00000046794|LCP2	ENSG00000043462|ENST00000046794|LCP2	ENSG00000043462|ENST00000046794|LCP2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	598.842948	1195.67134	1.4386	0.00086148	-1.5697	-0.00093999	-0.13111	-7.8512E-05	598.842081282191	78.814	2.2595	76.47	76.056	78.316	-2.3441	0.14062	-0.0014193	NaN	71.296	94	44	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	427970			27140	1129	22212	22239							0.08133382668370359
KVYNTPST	8	Unmodified	_KVYNTPST_					0	0	0		nc|ENSG00000139154|Q6ZN18-3|AEBP2;ENSG00000139154|ENST00000266508|AEBP2;nc|ENSG00000139154|Q6ZN18|AEBP2	nc|ENSG00000139154|Q6ZN18-3|AEBP2	nc|ENSG00000139154|Q6ZN18-3|AEBP2	MULTI-SECPEP	OvCa9_classI_Rep2	2	455.7580261230469	2	455.23745	908.460347	0.12511	5.6955E-05	0.71714	0.00032647	0.84225	0.00038342	455.2373687750876	51.156	0.94142	48.362	47.975	48.916	-2.794					31	18	2	0	0	0	0.028476	1	3375	3375		53.351	14.545	1	49110			27141	4747	22213	22240	30339	30339					0.002455056264693667
KVYTFNSVRK	10	Unmodified	_KVYTFNSVRK_					0	0	0		nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4;nc|ENSG00000058668|P23634-5|ATP2B4;nc|ENSG00000058668|P23634-4|ATP2B4;nc|ENSG00000058668|P23634-3|ATP2B4;nc|ENSG00000058668|P23634-2|ATP2B4;nc|ENSG00000058668|P23634-7|ATP2B4;ENSG00000058668|ENST00000357681|ATP2B4;ATP2B4|p.T807Kfs*11|1|0.14|ENSG00000058668|chr1:203720559-203720569|GCACAGATGTA/-|frameshift_variant;ATP2B1|p.N713Ifs*22|1|0.46|ENSG00000070961|chr12:89611302-89611302|T/-|frameshift_variant;ATP2B3|p.K912Qfs*72|1|0.12|ENSG00000067842|chrX:153559836-153559837|-/C|frameshift_variant;nc|ENSG00000070961|P20020-4|ATP2B1;ENSG00000157087|ENST00000360273|ATP2B2;nc|ENSG00000157087|Q01814-5|ATP2B2;ENSG00000067842|ENST00000263519|ATP2B3;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000157087|Q01814-8|ATP2B2;nc|ENSG00000067842|Q16720-4|ATP2B3;nc|ENSG00000157087|Q01814-2|ATP2B2;nc|ENSG00000157087|Q01814-6|ATP2B2;nc|ENSG00000157087|Q01814-3|ATP2B2;nc|ENSG00000070961|P20020-6|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000067842|Q16720-2|ATP2B3;nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000067842|Q16720-5|ATP2B3;nc|ENSG00000157087|Q01814-7|ATP2B2;nc|ENSG00000067842|Q16720-3|ATP2B3;nc|ENSG00000067842|Q16720-6|ATP2B3;nc|ENSG00000157087|Q01814-4|ATP2B2;nc|ENSG00000067842|Q16720-7|ATP2B3;nc|ENSG00000067842|Q16720-8|ATP2B3;nc|ENSG00000070961|P20020-1|ATP2B1	nc|ENSG00000058668|P23634-8|ATP2B4;ATP2B1|p.N713Ifs*22|1|0.46|ENSG00000070961|chr12:89611302-89611302|T/-|frameshift_variant	nc|ENSG00000058668|P23634-8|ATP2B4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.5875244140625	3	414.571545	1240.69281	0.15917	6.5986E-05	-3.1376	-0.0013008	-2.9785	-0.0012348	414.5701603463615	22.263	1.2333	20.925	20.523	21.757	-1.3386					73	29	3	0	0	0	0.027253	1	332	332		20.03	0	1	105330			27142	14878;129	22214	22241	30340	30340					0.08208767697078656
KVYTGRVV	8	Unmodified	_KVYTGRVV_					0	0	0		tr|A0A553SH99|A0A553SH99_NIACISmallribosomalsubunitproteinuS17OS=NialliacirculansOX=1397GN=rpsQPE=3SV=1	tr|A0A553SH99|A0A553SH99_NIACISmallribosomalsubunitproteinuS17OS=NialliacirculansOX=1397GN=rpsQPE=3SV=1	tr|A0A553SH99|A0A553SH99_NIACISmallribosomalsubunitproteinuS17OS=NialliacirculansOX=1397GN=rpsQPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	461.7419738769531	2	461.279452	920.544351	-0.751	-0.00034642	-0.18402	-8.4885E-05	-0.93502	-0.00043131	461.2792224877934	49.529	0.35027	49.529	49.373	49.723	0					12	7	2	0	0	0	0.028476	1	3728	3728		37.159	8.9048	1	191850			27143	33250	22215	22242	30341	30341					0.08090081514046688
KVYVQHRL	8	Unmodified	_KVYVQHRL_					0	0	0		nc|ENSG00000188566|Q9UHB4-3|NDOR1;nc|ENSG00000188566|Q9UHB4-4|NDOR1;ENSG00000188566|ENST00000684003|NDOR1;nc|ENSG00000188566|Q9UHB4-2|NDOR1	nc|ENSG00000188566|Q9UHB4-3|NDOR1	nc|ENSG00000188566|Q9UHB4-3|NDOR1	MULTI-MSMS	OvCa9_classI_Rep2	2	521.81396484375	2	521.811451	1041.60835	-0.83564	-0.00043605	3.6163	0.001887	2.7806	0.001451	521.8134554363941	67.923	3.082	65.262	64.842	67.924	-2.661					124	61	3	0	0	0	0.73626	1	5391	5391		33.516	3.0119	1	4500900			27144	8479	22216	22243	30342	30342					0.08920861671003877
KVYYPKYLSK	10	Unmodified	_KVYYPKYLSK_					0	0	0		MOSPD2|p.N451Lfs*4|1|0.44|ENSG00000130150|chrX:14918712-14918715|CAAA/-|frameshift_variant;nc|ENSG00000130150|Q8NHP6-2|MOSPD2;ENSG00000130150|ENST00000380492|MOSPD2	MOSPD2|p.N451Lfs*4|1|0.44|ENSG00000130150|chrX:14918712-14918715|CAAA/-|frameshift_variant	MOSPD2|p.N451Lfs*4|1|0.44|ENSG00000130150|chrX:14918712-14918715|CAAA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	430.24835205078125	3	430.24818	1287.72271	-0.91962	-0.00039567	1.0995	0.00047305	0.17986	7.7386E-05	430.2485155323633	58.14	1.769	55.348	54.724	56.493	-2.792					95	34	4	0	0	0	0.19075	1	4182	4182		128.6	59.756	1	315700			27145	3958	22217	22244	30343	30343					0.09035706642407604
KVYYPKYLSK	10	Unmodified	_KVYYPKYLSK_					0	0	0		MOSPD2|p.N451Lfs*4|1|0.44|ENSG00000130150|chrX:14918712-14918715|CAAA/-|frameshift_variant;nc|ENSG00000130150|Q8NHP6-2|MOSPD2;ENSG00000130150|ENST00000380492|MOSPD2	MOSPD2|p.N451Lfs*4|1|0.44|ENSG00000130150|chrX:14918712-14918715|CAAA/-|frameshift_variant	MOSPD2|p.N451Lfs*4|1|0.44|ENSG00000130150|chrX:14918712-14918715|CAAA/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	430.24818	1287.72271	0.70021	0.00030126	-0.62883	-0.00027055	0.071377	3.071E-05	430.2478208597443	58.935	1.8849	55.543	54.952	56.837	-3.392	0.097606	-0.00084093	NaN	128.6	78	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	313090			27146	3958	22217	22244							0.09035706642407604
KWEILLQY	8	Unmodified	_KWEILLQY_					0	0	0			REV__UVRAG-TMEM194A|1|fusion	REV__UVRAG-TMEM194A|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	546.80712890625	2	546.808042	1091.60153	-0.5412	-0.00029593	-3.3981	-0.0018581	-3.9393	-0.0021541	546.8061006605118	57.83	1.5522	55.038	54.625	56.177	-2.792					87	30	4	0	0	0	0.59148	1	4153	4153		65.803	5.5092	1	347280	+		27147	23014	22218	22245	30344	30344					0.059395039997752974
KWFFQKLRF	9	Unmodified	_KWFFQKLRF_					0	0	0		ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-MSMS	OvCa99_classI_Rep5	1	433.91851806640625	3	433.916876	1298.7288	2.7855	0.0012087	-0.52788	-0.00022906	2.2576	0.00097961	433.9167153881013	99.672	1.0852	99.672	99.318	100.4	0					52	25	3	0	0	0	0.13504	2	11011	11011;11041		87.696	50.097	1	4186700			27148	4068	22219	22246	30345;30346	30345					0.09138269664572363
KWGICLIYIL	10	Unmodified	_KWGICLIYIL_					0	0	0		ENST00000608354.1_1_22:30642479-30642794:+|nuORF	ENST00000608354.1_1_22:30642479-30642794:+|nuORF	ENST00000608354.1_1_22:30642479-30642794:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3535766601562	2	611.356845	1220.69914	-2.3862	-0.0014588	0.96492	0.00058991	-1.4212	-0.00086888	611.3572929291362	147.43	3.7918	146.48	144.56	148.35	-0.9512					254	75	5	0	0	0	0.76627	1	12380	12380		23.042	0.46283	1	250910			27149	14294	22220	22247	30347	30347					0.09761569604233955
KWGKPLVID	9	Unmodified	_KWGKPLVID_					0	0	0		nc|ENSG00000240303|Q709F0-3|ACAD11;nc|ENSG00000240303|Q709F0-2|ACAD11;ENSG00000240303|ENST00000264990|ACAD11;ENST00000469042.5_1_3:132298334-132378619:-|nuORF	nc|ENSG00000240303|Q709F0-3|ACAD11	nc|ENSG00000240303|Q709F0-3|ACAD11	MULTI-MSMS	OvCa9_classI_Rep2	2	528.3157958984375	2	528.316035	1054.61752	-1.6359	-0.00086425	1.6184	0.00085502	-0.017477	-9.2333E-06	528.3167083597772	101.46	1.3869	100.7	100.32	101.71	-0.76401					60	19	4	0	0	0	0.35444	1	9318	9318		56.721	3.3696	1	372150			27150	9337	22221	22248	30348	30348					0.09239210236637518
KWGKPLVID	9	Unmodified	_KWGKPLVID_					0	0	0		nc|ENSG00000240303|Q709F0-3|ACAD11;nc|ENSG00000240303|Q709F0-2|ACAD11;ENSG00000240303|ENST00000264990|ACAD11;ENST00000469042.5_1_3:132298334-132378619:-|nuORF	nc|ENSG00000240303|Q709F0-3|ACAD11	nc|ENSG00000240303|Q709F0-3|ACAD11	MULTI-MSMS	OvCa9_classI_Rep3	3	528.3173217773438	2	528.316035	1054.61752	-0.93969	-0.00049646	1.1767	0.00062168	0.23703	0.00012523	528.3165311420901	102.19	1.3583	100.67	100	101.36	-1.5211					57	25	3	0	0	0	0.33652	2	7021	7021;7040		58.782	19.529	1	508870			27151	9337	22221	22248	30349;30350	30349					0.09239210236637518
KWGKPLVID	9	Unmodified	_KWGKPLVID_					0	0	0		nc|ENSG00000240303|Q709F0-3|ACAD11;nc|ENSG00000240303|Q709F0-2|ACAD11;ENSG00000240303|ENST00000264990|ACAD11;ENST00000469042.5_1_3:132298334-132378619:-|nuORF	nc|ENSG00000240303|Q709F0-3|ACAD11	nc|ENSG00000240303|Q709F0-3|ACAD11	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.3179321289062	2	528.316035	1054.61752	-0.93602	-0.00049451	1.3857	0.00073207	0.44965	0.00023756	528.3166159596233	102.86	1.7279	100.66	99.727	101.46	-2.1994					72	29	4	0	0	0	0.42676	1	9294	9294		49.442	7.0454	1	493660			27152	9337	22221	22248	30351	30351					0.09239210236637518
KWIGCYSSL	9	Unmodified	_KWIGCYSSL_					0	0	0			REV__NLRX1|p.R928Qfs*65|1|0.06|ENSG00000160703|chr11:119183293-119183294|-/AGATCACACAGGCCCTTAAAGCAGTA|frameshift_variant	REV__NLRX1|p.R928Qfs*65|1|0.06|ENSG00000160703|chr11:119183293-119183294|-/AGATCACACAGGCCCTTAAAGCAGTA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.3236083984375	2	528.762778	1055.511	-1.2447	-0.00065814	2.5679	0.0013578	1.3232	0.00069967	528.764203637149	135.91	0.98482	134.8	134.51	135.49	-1.1076					34	19	2	0	0	0	0.027462	1	11027	11027		27.882	3.6795	1	24093	+		27153	29256	22222	22249	30352	30352					-0.014532883201809454
KWIGTLVALHQ	11	Unmodified	_KWIGTLVALHQ_					0	0	0			REV__ENST00000467077.1_1_3:142074240-142074312:-|nuORF	REV__ENST00000467077.1_1_3:142074240-142074312:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3690185546875	2	633.371872	1264.72919	-4.8823	-0.0030923	0.81247	0.0005146	-4.0699	-0.0025777	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.71191	1	13224	13224		25.574	0	1	765700	+		27154	26193	22223	22250	30353	30353					0.10741644593804267
KWIIFGFIL	9	Unmodified	_KWIIFGFIL_					0	0	0		NCKAP1|p.R611Efs*31|1|0.04|ENSG00000061676|chr2:182962210-182962210|A/-|frameshift_variant;ENSG00000061676|ENST00000361354|NCKAP1;nc|ENSG00000061676|Q9Y2A7-2|NCKAP1	NCKAP1|p.R611Efs*31|1|0.04|ENSG00000061676|chr2:182962210-182962210|A/-|frameshift_variant	NCKAP1|p.R611Efs*31|1|0.04|ENSG00000061676|chr2:182962210-182962210|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	568.8453979492188	2	568.846971	1135.67939	1.1361	0.00064626	-1.7226	-0.00097992	-0.58655	-0.00033366	568.845786397459	122.98	2.0826	121.95	121	123.08	-1.034					125	39	4	0	0	0	0.42057	1	9466	9466		50.025	5.9077	1	474050			27155	1272	22224	22251	30354	30354					0.116975616558193
KWKLGPRL	8	Unmodified	_KWKLGPRL_					0	0	0			REV__ENST00000528251.1_2_11:77790746-77790857:-|nuORF	REV__ENST00000528251.1_2_11:77790746-77790857:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.3045959472656	2	499.318912	996.62327	-0.49175	-0.00024554	0.53247	0.00026587	0.040716	2.033E-05	499.3189270406589	98.615	1.5442	96.93	96.388	97.932	-1.685					70	29	3	0	0	0	0.028476	1	6554	6554		24.203	2.2429	1	190600	+		27156	27164	22225	22252	30355	30355					0.1248235353898508
KWKNWLMRILS	11	Unmodified	_KWKNWLMRILS_					0	0	0			REV__ENST00000459737.5_1_14:56108470-56114768:+|nuORF	REV__ENST00000459737.5_1_14:56108470-56114768:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.2834777832031	3	492.28323	1473.82786	0.073279	3.6074E-05	-1.3311	-0.00065525	-1.2578	-0.00061918	492.2824806767738	20.267	1.2263	18.928	18.689	19.915	-1.3386					64	25	3	0	0	0	0.7252	1	58	58		12.957	0.52465	1	202630	+		27157	26064	22226	22253	30356	30356					0.10989924567206799
KWKSFTLSRI	10	Unmodified	_KWKSFTLSRI_					0	0	0		ENSG00000196569|ENST00000421865|LAMA2;LAMA2|p.K2491Lfs*57|1|0.05|ENSG00000196569|chr6:129478711-129478712|-/CT|frameshift_variant	ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.3688354492188	2	633.371872	1264.72919	-2.0264	-0.0012835	-2.0965	-0.0013279	-4.123	-0.0026114	633.3704245475564	148.87	1.0967	147.43	146.93	148.02	-1.4344					53	22	3	0	0	0	0.78463	1	14670	14670		20.947	5.3051	1	50822			27158	8627	22227	22254	30357	30357					0.10741644593804267
KWKSFTLSRI	10	Unmodified	_KWKSFTLSRI_					0	0	0		ENSG00000196569|ENST00000421865|LAMA2;LAMA2|p.K2491Lfs*57|1|0.05|ENSG00000196569|chr6:129478711-129478712|-/CT|frameshift_variant	ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.3665161132812	2	633.371872	1264.72919	-2.6571	-0.001683	-1.6654	-0.0010548	-4.3225	-0.0027377	633.3706685096566	150.42	2.9234	148.98	147.78	150.7	-1.4344					195	63	4	0	0	0	0.70152	1	14905	14905		30.318	1.1477	1	147740			27159	8627	22227	22254	30358	30358					0.10741644593804267
KWLDPAEL	8	Unmodified	_KWLDPAEL_					0	0	0			REV__ENST00000477790.1_1_10:38385521-38404340:+|nuORF	REV__ENST00000477790.1_1_10:38385521-38404340:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	486.2646484375	2	486.263468	970.512382	1.1545	0.00056141	2.1439	0.0010425	3.2985	0.0016039	486.26439439503525	61.985	2.2064	58.916	57.872	60.078	-3.0685					97	53	2	0	0	0	0.67745	1	2255	2255		47.916	7.1374	1	48498	+		27160	26395	22228	22255	30359	30359					0.025946690402406603
KWLGRAGPELV	11	Unmodified	_KWLGRAGPELV_					0	0	0			REV__nc|ENSG00000137098|Q99932-1|SPAG8	REV__nc|ENSG00000137098|Q99932-1|SPAG8	MULTI-MSMS	OvCa9_classI_Rep4_	4	409.2424621582031	3	409.239907	1224.69789	1.9244	0.00078752	4.2593	0.0017431	6.1836	0.0025306	409.24151722865713	36.236	1.595	33.387	32.99	34.585	-2.849					71	31	3	0	0	0	0.71831	1	1228	1228		23.378	1.5975	1	214070	+		27161	19434	22229	22256	30360	30360					0.09453071559687487
KWLHYTPLAL	10	Unmodified	_KWLHYTPLAL_					0	0	0			REV__nc|ENSG00000099866|Q13477-3|MADCAM1	REV__nc|ENSG00000099866|Q13477-3|MADCAM1	MULTI-MSMS	OvCa9_classI_Rep2	2	414.5704650878906	3	414.572886	1240.69683	-0.18545	-7.6882E-05	-3.0744	-0.0012746	-3.2599	-0.0013515	414.5715900774845	67.622	1.8304	64.961	64.545	66.375	-2.661					91	36	4	0	0	0	0.70152	1	5305	5305		30.318	1.1477	1	490760	+		27162	17337	22230	22257	30361	30361					0.08610857190819843
KWLLLLSI	8	Unmodified	_KWLLLLSI_					0	0	0			REV__tr|A0A553SU61|A0A553SU61_NIACICPBPfamilyintramembranemetalloproteaseOS=NialliacirculansOX=1397GN=CEQ21_06325PE=4SV=1	REV__tr|A0A553SU61|A0A553SU61_NIACICPBPfamilyintramembranemetalloproteaseOS=NialliacirculansOX=1397GN=CEQ21_06325PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	493.3233947753906	2	493.325871	984.637189	-0.72862	-0.00035945	-3.5931	-0.0017726	-4.3217	-0.002132	493.32396108529844	115.77	1.6299	114.73	114.45	116.08	-1.0414					67	32	3	0	0	0	0.67745	1	8660	8660		47.916	1.9636	1	204450	+		27163	31042	22231	22258	30362	30362					0.14425586247421052
KWLPRYRKWKQ	11	Unmodified	_KWLPRYRKWKQ_					0	0	0			REV__ENSG00000197653|ENST00000673944|DNAH10	REV__ENSG00000197653|ENST00000673944|DNAH10	MULTI-MSMS	OvCa99_classI_Rep5	1	530.6482543945312	3	530.312288	1587.91504	-0.78698	-0.00041735	3.4756	0.0018432	2.6887	0.0014258	530.314069367432	26.27	0.55064	26.27	26.042	26.593	0					31	10	4	0	0	0	0.72548	1	667	667		9.2118	0.80454	1	245010	+		27164	22941	22232	22259	30363	30363					0.14459466833113765
KWLPRYRKWKQ	11	Unmodified	_KWLPRYRKWKQ_					0	0	0			REV__ENSG00000197653|ENST00000673944|DNAH10	REV__ENSG00000197653|ENST00000673944|DNAH10	MULTI-MSMS	OvCa9_classI_Rep2	2	530.648681640625	3	530.312288	1587.91504	2.9528	0.0015659	-0.31791	-0.00016859	2.6349	0.0013973	530.3122639289564	25.136	0.8143	22.427	22.261	23.076	-2.7097					43	17	4	0	0	0	0.72516	2	223	223;241		13.508	7.5069	1	119880	+		27165	22941	22232	22259	30364;30365	30364					0.14459466833113765
KWLPRYRKWKQ	11	Unmodified	_KWLPRYRKWKQ_					0	0	0			REV__ENSG00000197653|ENST00000673944|DNAH10	REV__ENSG00000197653|ENST00000673944|DNAH10	MULTI-SECPEP	OvCa9_classI_Rep2	2	530.648681640625	3	530.312288	1587.91504	2.9528	0.0015659	-0.31791	-0.00016859	2.6349	0.0013973	530.3122639289564	25.136	0.8143	22.427	22.261	23.076	-2.7097					43	17	4	0	0	0	0.026364	1	223	223		13.508	7.5069	1	119880	+		27166	22941	22232	22259	30366	30366					0.14459466833113765
KWLPRYRKWKQ	11	Unmodified	_KWLPRYRKWKQ_					0	0	0			REV__ENSG00000197653|ENST00000673944|DNAH10	REV__ENSG00000197653|ENST00000673944|DNAH10	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	530.312288	1587.91504	-0.78698	-0.00041735	3.4756	0.0018432	2.6887	0.0014258	530.314069367432	26.27	0.55064	26.27	26.042	26.593	0	0	0	NaN	9.2118	31	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	245010	+		27167	22941	22232	22259							0.14459466833113765
KWLVYHYKEWL	11	Unmodified	_KWLVYHYKEWL_					0	0	0			REV__ENST00000355774.6_2_14:75497265-75497367:-|nuORF	REV__ENST00000355774.6_2_14:75497265-75497367:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.814453125	3	522.281883	1563.82382	1.051	0.00054893	-3.9985	-0.0020883	-2.9475	-0.0015394	522.2788565635213	107.12	0.21255	107.12	107.02	107.23	0					6	4	2	0	0	0	0.026497	1	12070	12070		9.6461	0.43434	1	99568	+		27168	24755	22233	22260	30367	30367					0.06446158345102049
KWNPTAGVAF	10	Unmodified	_KWNPTAGVAF_					0	0	0		ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF;ENSG00000102978|ENST00000219252|POLR2C	ENST00000564651.5_1_16:57496627-57504171:+|nuORF	ENST00000564651.5_1_16:57496627-57504171:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	545.7903442382812	2	545.787641	1089.56073	2.9496	0.0016098	-0.67717	-0.00036959	2.2724	0.0012403	545.7871753384218	97.765	1.1546	97.765	97.397	98.552	0					89	26	5	0	0	0	0.30325	1	10750	10750		80.455	3.6805	1	18229000			27169	2272	22234	22261	30368	30368					0.019531626801381208
KWNTMIGLQ	9	Unmodified	_KWNTMIGLQ_					0	0	0			REV__ENST00000608891.1_1_6:88068830-88075111:+|nuORF	REV__ENST00000608891.1_1_6:88068830-88075111:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	545.7900390625	2	545.789327	1089.5641	2.9496	0.0016098	-3.7652	-0.002055	-0.81561	-0.00044515	545.7871753384218	97.765	1.1546	97.765	97.397	98.552	0					89	26	5	0	0	0	0.10363	1	10776	10776		96.19	15.736	1	18229000	+		27170	23117	22235	22262	30369	30369					0.022900894624854118
KWQKSIVN	8	Unmodified	_KWQKSIVN_					0	0	0		ENSG00000142303|ENST00000597188|ADAMTS10;nc|ENSG00000142303|Q9H324|ADAMTS10;ENST00000601163.1_1_19:8661189-8662174:-|nuORF	ENSG00000142303|ENST00000597188|ADAMTS10	ENSG00000142303|ENST00000597188|ADAMTS10	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.30230712890625	2	501.790184	1001.56581	-1.2139	-0.0006091	1.3391	0.00067195	0.12525	6.2848E-05	501.7914804813339	99.173	0.24861	98.28	98.156	98.405	-0.89305					5	4	2	0	0	0	0.028476	1	9043	9043		44.117	8.4985	1	4194.6			27171	4965	22236	22263	30370	30370					0.06509466542752307
KWQQEGLTV	9	Unmodified	_KWQQEGLTV_					0	0	0			REV__ENSG00000148677|ENST00000371697|ANKRD1	REV__ENSG00000148677|ENST00000371697|ANKRD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.7913208007812	2	544.790381	1087.56621	-1.3996	-0.00076248	1.1638	0.000634	-0.23583	-0.00012848	544.7909643849708	54.096	1.2817	50.848	50.517	51.798	-3.2474					45	24	4	0	0	0	0.14998	1	3343	3343		84.916	13.62	1	652890	+		27172	20120	22237	22264	30371	30371					0.025928414719373905
KWQRYEIKPYL	11	Unmodified	_KWQRYEIKPYL_					0	0	0			REV__tr|A0A7D7A3A4|A0A7D7A3A4_9CLOTPHdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22945PE=4SV=1	REV__tr|A0A7D7A3A4|A0A7D7A3A4_9CLOTPHdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22945PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.6207275390625	3	508.617155	1522.82963	0.26282	0.00013368	3.9317	0.0019997	4.1945	0.0021334	508.61901347445894	57.813	1.0504	57.813	57.522	58.572	0					91	24	6	0	0	0	0.72488	1	4870	4870		17.167	0.63689	1	9158400	+		27173	32577	22238	22265	30372	30372					0.0891325685679476
KWQRYEIKPYL	11	Unmodified	_KWQRYEIKPYL_					0	0	0			REV__tr|A0A7D7A3A4|A0A7D7A3A4_9CLOTPHdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22945PE=4SV=1	REV__tr|A0A7D7A3A4|A0A7D7A3A4_9CLOTPHdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22945PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	508.617155	1522.82963	0.26282	0.00013368	3.9317	0.0019997	4.1945	0.0021334	508.61901347445894	57.813	1.0504	57.813	57.522	58.572	0	0	0	NaN	17.167	91	24	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9158400	+		27174	32577	22238	22265							0.0891325685679476
KWRIYIKRIER	11	Unmodified	_KWRIYIKRIER_					0	0	0		tr|A0A7D6VT05|A0A7D6VT05_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07245PE=4SV=1	tr|A0A7D6VT05|A0A7D6VT05_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07245PE=4SV=1	tr|A0A7D6VT05|A0A7D6VT05_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07245PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.9857788085938	3	520.987693	1559.94125	-6.8333	-0.0035601	0.88294	0.00046	-5.9504	-0.0031001	520.9883932811922	164.14	0.24614	162.51	162.36	162.61	-1.6336					10	5	3	0	0	0	0.026538	1	16209	16209		1.2319	0	1	127120			27175	35074	22239	22266	30373	30373					0.1836773600455217
KWSELGLWGP	10	Unmodified	_KWSELGLWGP_					0	0	0		chr12:52897618-52898826|89|116.3|0.0|23.47|-|1|KRT8,None|1	chr12:52897618-52898826|89|116.3|0.0|23.47|-|1|KRT8,None|1	chr12:52897618-52898826|89|116.3|0.0|23.47|-|1|KRT8,None|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.8029174804688	2	586.808574	1171.60259	-6.8597	-0.0040253	-2.4887	-0.0014604	-9.3484	-0.0054857	586.8069299890403	160.36	3.1265	158.75	158.28	161.4	-1.61					144	76	3	0	0	0	0.79715	1	15931	15931		19.36	3.7182	1	162470			27176	317	22240	22267	30374	30374					0.023657183686509597
KWWVAKSVE	9	Unmodified	_KWWVAKSVE_					0	0	0			REV__ENST00000401408.5_1_2:55455228-55459402:-|nuORF	REV__ENST00000401408.5_1_2:55455228-55459402:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	566.8087158203125	2	566.811116	1131.60768	-1.2191	-0.00069098	-2.3121	-0.0013105	-3.5312	-0.0020015	566.8096697785414	54.761	1.297	51.947	51.424	52.721	-2.8139					80	25	4	0	0	0	0.48324	1	3793	3793		44.117	1.2525	1	651890	+		27177	25410	22241	22268	30375	30375					0.04714022231269155
KYADKIYSI	9	Unmodified	_KYADKIYSI_					0	0	0		nc|ENSG00000086205|Q04609-10|FOLH1;nc|ENSG00000086205|Q04609-6|FOLH1;nc|ENSG00000086205|Q04609-3|FOLH1;nc|ENSG00000086205|Q04609-9|FOLH1;nc|ENSG00000086205|Q04609-8|FOLH1;nc|ENSG00000086205|Q04609-7|FOLH1;ENSG00000086205|ENST00000256999|FOLH1	nc|ENSG00000086205|Q04609-10|FOLH1	nc|ENSG00000086205|Q04609-10|FOLH1	MULTI-MSMS	OvCa99_classI_Rep5	1	550.8048706054688	2	550.802957	1099.59136	-0.59922	-0.00033005	0.46361	0.00025536	-0.1356	-7.4691E-05	550.8030064762427	68.42	0.78524	68.42	68.192	68.977	0					45	18	3	0	0	0	0.034473	1	6460	6460		131.62	41.015	1	5440300			27178	1750	22242	22269	30376	30376					0.045548962744987875
KYADLSHNRL	10	Unmodified	_KYADLSHNRL_					0	0	0		nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1	nc|ENSG00000113643|P54136-2|RARS1	nc|ENSG00000113643|P54136-2|RARS1	MULTI-MSMS	OvCa99_classI_Rep5	1	608.825927734375	2	608.825286	1215.63602	0.20184	0.00012289	-0.3036	-0.00018484	-0.10176	-6.1955E-05	608.8250222031418	46.739	0.53093	46.739	46.545	47.076	0					21	11	2	0	0	0	0.18931	1	3326	3326		96.034	42.945	1	1384900			27179	2985	22243	22270	30377	30377					0.03682720140568563
KYAFEITDI	9	Unmodified	_KYAFEITDI_					0	0	0		tr|A0A7D6W0P1|A0A7D6W0P1_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00240PE=4SV=1	tr|A0A7D6W0P1|A0A7D6W0P1_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00240PE=4SV=1	tr|A0A7D6W0P1|A0A7D6W0P1_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00240PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	550.2901611328125	2	550.28714	1098.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.063	1	69.063	68.563	69.563	0								0	0	0	0.028067	1	6552	6552		90.777	3.0224	1				27180	35382	22244	22271	30378	30378					0.01438903520556778
KYAHMINGF	9	Unmodified	_KYAHMINGF_					0	0	0		ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	ENSG00000035687|ENST00000366535|ADSS2	MULTI-MSMS	OvCa99_classI_Rep5	1	540.7698974609375	2	540.768394	1079.52224	-0.13819	-7.4729E-05	0.83599	0.00045208	0.6978	0.00037735	540.7687010758511	67.523	0.97952	67.523	67.212	68.192	0					72	24	4	0	0	0	0.019428	2	6313	6313;6341		147.69	70.919	1	6031500			27181	1084	22245	22272	30379;30380	30379					-0.014344662260555197
KYALIIGSKN	10	Unmodified	_KYALIIGSKN_					0	0	0		tr|A0A7D7A286|A0A7D7A286_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15790PE=3SV=1	tr|A0A7D7A286|A0A7D7A286_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15790PE=3SV=1	tr|A0A7D7A286|A0A7D7A286_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15790PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	553.829345703125	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.75313	1	11772	11772		24.519	2.5593	1	308210			27182	36066	22246	22273	30381	30381					0.10094577919812764
KYAPRPIFI	9	Unmodified	_KYAPRPIFI_					0	0	0		nc|ENSG00000116984|Q99707-2|MTR;ENSG00000116984|ENST00000366577|MTR	nc|ENSG00000116984|Q99707-2|MTR	nc|ENSG00000116984|Q99707-2|MTR	MULTI-MSMS	OvCa99_classI_Rep5	1	552.8333740234375	2	552.831852	1103.64915	0.50869	0.00028122	1.38	0.0007629	1.8887	0.0010441	552.8324661405451	81.155	0.54245	81.155	80.871	81.413	0					20	12	2	0	0	0	0.29717	1	8342	8342		63.306	15.391	1	2577500			27183	3224	22247	22274	30382	30382					0.10147202990583537
KYCILFFVY	9	Unmodified	_KYCILFFVY_					0	0	0			REV__ENST00000469535.5_1_1:207940917-207941046:+|nuORF	REV__ENST00000469535.5_1_1:207940917-207941046:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	598.316162109375	2	598.314646	1194.61474	-0.34945	-0.00020908	2.0808	0.001245	1.7313	0.0010359	598.3162323551261	107.59	8.1344	107.28	106.62	114.76	-0.30836					394	164	6	0	0	0	0.58665	1	10339	10339		33.516	0.70317	1	20062000	+		27184	26243	22248	22275	30383	30383					0.025216187875003016
KYCLYLLIL	9	Unmodified	_KYCLYLLIL_					0	0	0			REV__ENSG00000178904|ENST00000392250|DPY19L3	REV__ENSG00000178904|ENST00000392250|DPY19L3	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.3244018554688	2	571.338121	1140.66169	1.6744	0.00095666	-1.5485	-0.0008847	0.12594	7.1955E-05	571.336275993238	92.136	0.41959	92.136	92.008	92.428	0					14	9	3	0	0	0	0.027462	1	9938	9938		26.796	9.3281	1	250890	+		27185	22086	22249	22276	30384	30384					0.09698478338623318
KYDEIFYNL	9	Unmodified	_KYDEIFYNL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	OvCa99_classI_Rep5	1	602.7987060546875	2	602.797872	1203.58119	1.3798	0.00083174	0.71177	0.00042905	2.0916	0.0012608	602.798245176616	115.09	1.536	115.09	114.6	116.14	0					107	32	5	0	0	0	0.094791	1	13131	13131		98.582	13.421	1	3934000			27186	1044	22250	22277	30385	30385					-0.012457114507014921
KYDLNGTVDP	10	Unmodified	_KYDLNGTVDP_					0	0	0			REV__ENSG00000111245|ENST00000228841|MYL2	REV__ENSG00000111245|ENST00000228841|MYL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.8269653320312	2	561.277303	1120.54005	0.93183	0.00052301	-0.7093	-0.00039811	0.22253	0.0001249	561.2753621523834	101.66	0.97224	101.66	100.98	101.95	0					34	22	3	0	0	0	0.026803	1	11258	11258		40.058	10.909	1	268220	+		27187	18023	22251	22278	30386	30386					-0.015394724901852896
KYDPNVYSI	9	Unmodified	_KYDPNVYSI_					0	0	0		ENSG00000138448|ENST00000261023|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;nc|ENSG00000138448|P06756-3|ITGAV	ENSG00000138448|ENST00000261023|ITGAV;nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	OvCa99_classI_Rep5	1	549.7779541015625	2	549.776939	1097.53933	0.97564	0.00053638	1.3492	0.00074174	2.3248	0.0012781	549.7775509446394	81.551	1.2733	81.551	81.206	82.479	0					88	30	4	0	0	0	0.070405	2	8393	8393;8424		107.01	23.107	1	10863000			27188	4689;15046	22252	22279	30387;30388	30387					-0.005542671392504417
KYEELFPAF	9	Unmodified	_KYEELFPAF_					0	0	0		ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	ENSG00000105402|ENST00000263354|NAPA	MULTI-MSMS	OvCa99_classI_Rep5	1	572.291015625	2	572.289682	1142.56481	1.9792	0.0011327	0.32775	0.00018757	2.3069	0.0013202	572.2898241875617	122.08	1.8537	122.08	121.71	123.56	0					122	39	6	0	0	0	0.041116	3	14054	14031;14054;14078		125.81	56.186	1	9288900			27189	2453	22253	22280	30389;30390;30391	30390					-0.0007679261682369543
KYELDFSHF	9	Unmodified	_KYELDFSHF_					0	0	0		ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	MULTI-MSMS	OvCa99_classI_Rep5	1	593.2840576171875	2	593.282389	1184.55022	2.8236	0.0016752	-0.77514	-0.00045988	2.0485	0.0012153	593.2818037586609	99.295	0.69565	99.295	98.916	99.612	0					47	16	4	0	0	0	0.0086488	1	10958	10958		176.09	85.486	1	4067900			27190	4585	22254	22281	30392	30392					-0.034668647649596096
KYEWLKRV	8	Unmodified	_KYEWLKRV_					0	0	0			REV__LARS2|p.A725V|1|0.41|ENSG00000011376|chr3:45518032-45518032|C/T|missense_variant	REV__LARS2|p.A725V|1|0.41|ENSG00000011376|chr3:45518032-45518032|C/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	561.3283081054688	2	561.326934	1120.63931	2.7052	0.0015185	-0.93908	-0.00052713	1.7661	0.00099136	561.3263738091098	76.904	1.2763	76.904	76.48	77.757	0					96	30	5	0	0	0	0.62474	1	7708	7708		58.782	3.2778	1	18271000	+		27191	28615	22255	22282	30393	30393					0.08382014985227215
KYFAQNEI	8	Unmodified	_KYFAQNEI_					0	0	0			REV__nc|ENSG00000171877|Q7Z6J6-2|FRMD5	REV__nc|ENSG00000171877|Q7Z6J6-2|FRMD5	MULTI-MSMS	OvCa99_classI_Rep5	1	506.7567138671875	2	506.758549	1011.50255	1.0494	0.00053179	-3.404	-0.001725	-2.3546	-0.0011932	506.756812219355	156.25	1.162	156.25	155.73	156.9	0					36	22	2	0	0	0	0.66704	1	18298	18298		50.025	2.1089	1	136150	+		27192	21655	22256	22283	30394	30394					-0.0027451896515913177
KYFEKQFEL	9	Unmodified	_KYFEKQFEL_					0	0	0		ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	616.3233642578125	2	616.321514	1230.62847	2.0622	0.001271	-0.2312	-0.00014249	1.831	0.0011285	616.321332007672	82.781	1.3635	82.781	82.437	83.801	0					66	31	3	0	0	0	0.041232	2	8590	8568;8590		132.76	47.597	1	15653000			27193	5373	22257	22284	30395;30396	30396					0.02238567820290882
KYFEKQFEL	9	Unmodified	_KYFEKQFEL_					0	0	0		ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	616.321514	1230.62847	-1.954	-0.0012043	-1.4006	-0.00086322	-3.3546	-0.0020675	616.3205433895905	84.522	1.5989	82.975	82.64	84.239	-1.5462	-0.023736	-0.00033594	NaN	132.76	46	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69167			27194	5373	22257	22284							0.02238567820290882
KYFEKQFEL	9	Unmodified	_KYFEKQFEL_					0	0	0		ENST00000521973.5_1_8:125516164-125531109:-|nuORF;nc|ENSG00000147687|Q6P1N9-2|TATDN1;ENSG00000147687|ENST00000276692|TATDN1	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	ENST00000521973.5_1_8:125516164-125531109:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	616.321514	1230.62847	0.11042	6.8052E-05	-3.2171	-0.0019828	-3.1067	-0.0019147	616.3191741246193	85.461	1.4467	83.241	82.84	84.287	-2.2204	0.24158	-0.002575	NaN	132.76	45	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184940			27195	5373	22257	22284							0.02238567820290882
KYFEVPSVL	9	Unmodified	_KYFEVPSVL_					0	0	0		ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	MULTI-MSMS	OvCa99_classI_Rep5	1	541.3021850585938	2	541.30005	1080.58555	2.6406	0.0014294	0.57411	0.00031077	3.2147	0.0017401	541.3008330272287	115.92	1.2492	115.92	115.35	116.6	0					42	26	3	0	0	0	0.21231	1	13227	13227		74.255	15.473	1	914000			27196	4102	22258	22285	30397	30397					0.04847797762840855
KYFHPPAHL	9	Unmodified	_KYFHPPAHL_					0	0	0		PCCA-MBNL2|3|fusion;PCCA-MBNL2|1|fusion;nc|ENSG00000139793|Q5VZF2-2|MBNL2;nc|ENSG00000076770|Q9NUK0-5|MBNL3;ENSG00000139793|ENST00000679496|MBNL2;nc|ENSG00000152601|Q9NR56|MBNL1;ENSG00000152601|ENST00000324210|MBNL1;nc|ENSG00000139793|Q5VZF2|MBNL2;nc|ENSG00000152601|Q9NR56-2|MBNL1;ENST00000460166.1_1_3:152132852-152173345:+|nuORF;nc|ENSG00000152601|Q9NR56-6|MBNL1;nc|ENSG00000152601|Q9NR56-7|MBNL1;nc|ENSG00000076770|Q9NUK0-2|MBNL3;nc|ENSG00000152601|Q9NR56-4|MBNL1;nc|ENSG00000076770|Q9NUK0-3|MBNL3;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000076770|Q9NUK0-4|MBNL3;ENSG00000076770|ENST00000370853|MBNL3;nc|ENSG00000139793|Q5VZF2-3|MBNL2;PCCA-MBNL2|2|fusion;PCCA-MBNL2|4|fusion	PCCA-MBNL2|3|fusion;nc|ENSG00000139793|Q5VZF2-3|MBNL2	PCCA-MBNL2|3|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	555.2990112304688	2	555.298176	1108.5818	-0.025213	-1.4001E-05	-0.3632	-0.00020168	-0.38841	-0.00021568	555.2980022278747	56.396	2.0095	56.396	55.723	57.732	0					129	47	4	0	0	0	0.27546	3	4666	4637;4666;4721		65.803	4.6418	1	7892400			27197	15050;15051	22259	22286	30398;30399;30400	30399					0.031851727796492924
KYFLKPEVL	9	Unmodified	_KYFLKPEVL_					0	0	0		nc|ENSG00000144959|Q6PIU2-3|NCEH1;ENSG00000144959|ENST00000475381|NCEH1;nc|ENSG00000144959|Q6PIU2-2|NCEH1	nc|ENSG00000144959|Q6PIU2-3|NCEH1	nc|ENSG00000144959|Q6PIU2-3|NCEH1	MULTI-MSMS	OvCa99_classI_Rep5	1	568.8427124023438	2	568.839342	1135.66413	2.223	0.0012645	0.09818	5.5848E-05	2.3212	0.0013204	568.8392867526536	85.837	1.2575	85.837	85.544	86.801	0					63	30	3	0	0	0	0.2784	1	9041	9041		65.465	12.114	1	4366200			27198	5195	22260	22287	30401	30401					0.10172650067943323
KYFLWEEKF	9	Unmodified	_KYFLWEEKF_					0	0	0		ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	ENSG00000154016|ENST00000284154|GRAP	MULTI-MSMS	OvCa99_classI_Rep5	1	645.3333129882812	2	645.331882	1288.64921	-0.5263	-0.00033964	-0.33883	-0.00021866	-0.86513	-0.0005583	645.3316210069635	104.59	1.0782	104.59	104.28	105.36	0					83	24	5	0	0	0	0.0073128	2	11735	11707;11735		190.62	71.879	1	8675500			27199	5708	22261	22288	30402;30403	30403					0.016431581999313494
KYFLWVVKF	9	Unmodified	_KYFLWVVKF_					0	0	0		nc|ENSG00000177885|P62993-2|GRB2;ENST00000462266.1_1_17:73316451-73322393:-|nuORF;ENSG00000177885|ENST00000316804|GRB2	nc|ENSG00000177885|P62993-2|GRB2	nc|ENSG00000177885|P62993-2|GRB2	MULTI-MSMS	OvCa99_classI_Rep5	1	615.3590087890625	2	615.357702	1228.70085	1.7493	0.0010765	0.24564	0.00015115	1.995	0.0012276	615.35783660833	125.76	1.8636	125.76	125.45	127.32	0					122	40	5	0	0	0	0.019133	5	14539	14515;14539;14563;14589;14644		148.04	62.181	1	4289000			27200	7718	22262	22289	30404;30405;30406;30407;30408	30405					0.09564946684486131
KYFSFPVFF	9	Unmodified	_KYFSFPVFF_					0	0	0		nc|ENSG00000133059|Q6XUX3-2|DSTYK;ENSG00000133059|ENST00000367162|DSTYK;nc|ENSG00000133059|Q6XUX3-3|DSTYK	nc|ENSG00000133059|Q6XUX3-2|DSTYK	nc|ENSG00000133059|Q6XUX3-2|DSTYK	MULTI-MSMS	OvCa99_classI_Rep5	1	591.3071899414062	2	591.305136	1180.59572	0.83651	0.00049463	2.0627	0.0012197	2.8992	0.0017143	591.3064533844391	151.64	0.86139	151.64	151.35	152.21	0					37	17	3	0	0	0	0.33652	1	17752	17752		58.782	2.0609	1	186170			27201	4194	22263	22290	30409	30409					0.012644054880638578
KYGALVNNF	9	Unmodified	_KYGALVNNF_					0	0	0		ENSG00000117481|ENST00000474844|NSUN4;nc|ENSG00000117481|Q96CB9-2|NSUN4;nc|ENSG00000117481|Q96CB9-4|NSUN4;ENST00000495427.1_2_1:46810505-46812688:+|nuORF;ENST00000475281.1_1_1:46810505-46810817:+|nuORF	ENSG00000117481|ENST00000474844|NSUN4	ENSG00000117481|ENST00000474844|NSUN4	MULTI-MSMS	OvCa99_classI_Rep5	1	513.275634765625	2	513.274367	1024.53418	1.2011	0.00061647	-0.62676	-0.0003217	0.5743	0.00029478	513.2736610327736	83.14	0.68032	83.14	82.949	83.629	0					33	15	3	0	0	0	0.13482	1	8653	8653		87.754	26.782	1	1280000			27202	3257	22264	22291	30410	30410					0.02289473788800933
KYGFFLLQM	9	Unmodified	_KYGFFLLQM_					0	0	0		ENSG00000165972|ENST00000344280|CCDC38	ENSG00000165972|ENST00000344280|CCDC38	ENSG00000165972|ENST00000344280|CCDC38	MULTI-MSMS	OvCa99_classI_Rep5	1	573.8048706054688	2	573.804445	1145.59434	-0.61872	-0.00035502	-1.0236	-0.00058732	-1.6423	-0.00094234	573.8037062838122	24.315	0.60026	24.315	24.188	24.788	0					33	11	4	0	0	0	0.70177	1	480	480		17.365	3.9109	1	362810			27203	6623	22265	22292	30411	30411					0.027364481276663355
KYGFGYQL	8	Unmodified	_KYGFGYQL_					0	0	0		ENSG00000145632|ENST00000274289|PLK2;nc|ENSG00000185988|Q496M5-2|PLK5;ENSG00000185988|ENST00000454744|PLK5	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	OvCa99_classI_Rep5	1	488.2507019042969	2	488.25036	974.486168	1.77	0.0008642	0.23044	0.00011251	2.0004	0.00097671	488.2503222363108	91.376	0.78487	91.376	91.135	91.92	0					46	18	4	0	0	0	0.45246	1	9824	9824		82.305	13.518	1	3777800			27204	5233	22266	22293	30412	30412					-0.0020960013124522447
KYGIQMPAF	9	Unmodified	_KYGIQMPAF_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	527.7738647460938	2	527.773145	1053.53174	1.8848	0.00099472	0.40488	0.00021368	2.2896	0.0012084	527.7731935382726	108.51	1.6922	108.51	107.94	109.64	0					84	38	4	0	0	0	0.055688	2	12269	12269;12295		115.46	17.986	1	2742500			27205	4862	22267	22294	30413;30414	30413					0.007113020594943009
KYGIVFLLTL	10	Unmodified	_KYGIVFLLTL_					0	0	0		tr|A0A553SMA1|A0A553SMA1_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_22175PE=3SV=1	tr|A0A553SMA1|A0A553SMA1_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_22175PE=3SV=1	tr|A0A553SMA1|A0A553SMA1_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_22175PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	583.858154296875	2	583.862818	1165.71108	-6.9004	-0.0040289	-0.15251	-8.9045E-05	-7.053	-0.004118	583.8626216517176	154.95	1.1831	153.88	153.56	154.74	-1.073					81	29	4	0	0	0	0.72319	1	13297	13297		27.882	5.9224	1	200380			27206	33813	22268	22295	30415	30415					0.13485509619090408
KYGIVQEF	8	Unmodified	_KYGIVQEF_					0	0	0		ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-1|MTCL2;AURKA-SOGA1|1|fusion;nc|ENSG00000149639|O94964-3|MTCL2	ENSG00000149639|ENST00000237536|SOGA1;nc|ENSG00000149639|O94964-3|MTCL2	ENSG00000149639|ENST00000237536|SOGA1	MULTI-MSMS	OvCa99_classI_Rep5	1	492.26470947265625	2	492.263468	982.512382	1.7006	0.00083716	0.63859	0.00031436	2.3392	0.0011515	492.2637307642024	87.264	1.2402	87.264	86.931	88.171	0					42	29	2	0	0	0	0.064388	1	9229	9229		152.47	8.5839	1	4341300			27207	5483;15086	22269	22296	30416	30416					0.02042669040235978
KYGKERLISGL	11	Unmodified	_KYGKERLISGL_					0	0	0			REV__tr|A0A7D7AAW4|A0A7D7AAW4_9CLOTN-acetylmuramoyl-L-alanineamidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12935PE=4SV=1	REV__tr|A0A7D7AAW4|A0A7D7AAW4_9CLOTN-acetylmuramoyl-L-alanineamidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12935PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	421.9194030761719	3	421.918834	1262.73467	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.912	1	37.912	37.412	38.412	0								0	0	0	0.19302	1	2114	2114		41.08	2.3265	1		+		27208	32671	22270	22297	30417	30417					0.11381323385603537
KYGMEDAVKL	10	Unmodified	_KYGMEDAVKL_					0	0	0			REV__tr|A0A7D6W464|A0A7D6W464_9CLOTPolysaccharidedeacetylasefamilysporulationproteinPdaBOS=ClostridiumintestinaleOX=36845GN=pdaBPE=4SV=1	REV__tr|A0A7D6W464|A0A7D6W464_9CLOTPolysaccharidedeacetylasefamilysporulationproteinPdaBOS=ClostridiumintestinaleOX=36845GN=pdaBPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	577.2998046875	2	577.299724	1152.5849	0.67429	0.00038927	-1.2604	-0.00072762	-0.5861	-0.00033835	577.2985886158132	153.8	3.8009	153.8	153.4	157.2	0					185	75	4	0	0	0	0.5675	1	18164	18164		45.972	1.5951	1	5848200	+		27209	31935	22271	22298	30418	30418					0.014706350514870792
KYGNFIDKL	9	Unmodified	_KYGNFIDKL_					0	0	0		ENST00000477972.1_1_7:89976055-89982324:+|nuORF;nc|ENSG00000105793|A4D1E9-3|GTPBP10;nc|ENSG00000105793|A4D1E9-2|GTPBP10;ENSG00000105793|ENST00000222511|GTPBP10	ENST00000477972.1_1_7:89976055-89982324:+|nuORF	ENST00000477972.1_1_7:89976055-89982324:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	549.3069458007812	2	549.303124	1096.5917	0.33335	0.00018311	1.1804	0.00064838	1.5137	0.00083149	549.3033550046463	81.211	0.99198	81.211	80.744	81.736	0					38	23	4	0	0	0	0.26076	1	8372	8372		67.494	10.773	1	1797700			27210	2501	22272	22299	30419	30419					0.04726315994344077
KYGPIRQI	8	Unmodified	_KYGPIRQI_					0	0	0		ENSG00000115128|ENST00000233468|SF3B6;ENST00000478050.1_1_2:24296944-24299099:-|nuORF	ENSG00000115128|ENST00000233468|SF3B6	ENSG00000115128|ENST00000233468|SF3B6	MULTI-MSMS	OvCa99_classI_Rep5	1	487.7940368652344	2	487.792727	973.5709	-0.56492	-0.00027556	-0.031723	-1.5474E-05	-0.59664	-0.00029104	487.79269712472353	53.835	1.7177	53.835	53.475	55.193	0					108	40	5	0	0	0	0.35163	3	4307	4280;4307;4337		97.473	28.988	1	39389000			27211	3063	22273	22300	30420;30421;30422	30421					0.08305770405377189
KYGPVFSF	8	Unmodified	_KYGPVFSF_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-MSMS	OvCa99_classI_Rep5	1	472.7489929199219	2	472.747453	943.480354	-0.072432	-3.4242E-05	0.067552	3.1935E-05	-0.0048796	-2.3068E-06	472.74736840059956	104.85	1.6908	104.85	104.49	106.18	0					74	38	3	0	0	0	0.14547	3	11766	11742;11766;11789		133.81	39.806	1	5893000			27212	807	22274	22301	30423;30424;30425	30424					0.006353013570901567
KYGPVVSLL	9	Unmodified	_KYGPVVSLL_					0	0	0		nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	MULTI-MSMS	OvCa99_classI_Rep5	1	488.2981872558594	2	488.29731	974.580068	0.059658	2.9131E-05	0.61241	0.00029904	0.67207	0.00032817	488.297452312238	105.47	0.61336	105.47	105.13	105.75	0					33	13	3	0	0	0	0.35444	1	11840	11840		56.721	3.3696	1	927750			27213	15099	22275	22302	30426	30426					0.0917611897103825
KYGRIVEVL	9	Unmodified	_KYGRIVEVL_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX;ENST00000567262.5_1_X:135958813-135961586:-|nuORF;nc|ENSG00000147274|P38159-3|RBMX;ENSG00000170748|ENST00000306904|RBMXL2	nc|ENSG00000147274|P38159-2|RBMX;ENSG00000170748|ENST00000306904|RBMXL2	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	OvCa99_classI_Rep5	1	538.8280639648438	2	538.826766	1075.63898	2.5944	0.0013979	-0.15457	-8.3288E-05	2.4398	0.0013146	538.8266148910775	75.462	0.50953	75.462	75.292	75.801	0					47	12	5	0	0	0	0.12515	2	7512	7512;7541		90.37	7.6193	1	25419000			27214	5348;7131	22276	22303	30427;30428	30427					0.1041859526535518
KYHGYPYSF	9	Unmodified	_KYHGYPYSF_					0	0	0		ENSG00000102158|ENST00000618282|MAGT1;nc|ENSG00000104723|Q13454-2|TUSC3	ENSG00000102158|ENST00000618282|MAGT1;nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-MSMS	OvCa99_classI_Rep5	1	581.2730712890625	2	581.271824	1160.5291	-0.46388	-0.00026964	0.57524	0.00033437	0.11137	6.4735E-05	581.2720737004308	69.195	1.0234	69.195	68.939	69.962	0					75	24	6	0	0	0	0.019133	2	6588	6557;6588		148.04	62.683	1	5939700			27215	14937;2225	22277	22304	30429;30430	30430					-0.04474830073831981
KYHQVVTL	8	Unmodified	_KYHQVVTL_					0	0	0		nc|ENSG00000130270|O60423-3|ATP8B3;ENSG00000130270|ENST00000310127|ATP8B3;nc|ENSG00000130270|O60423-1|ATP8B3;ATP8B3|p.L1041Ffs*14|1|0.43|ENSG00000130270|chr19:1787135-1787136|-/AA|frameshift_variant	nc|ENSG00000130270|O60423-3|ATP8B3	nc|ENSG00000130270|O60423-3|ATP8B3	MULTI-MSMS	OvCa9_classI_Rep2	2	494.28521728515625	2	494.284734	986.554916	-0.09699	-4.7941E-05	3.0706	0.0015177	2.9736	0.0014698	494.28606431515385	83.612	2.4718	82.013	81.369	83.841	-1.5988					133	49	4	0	0	0	0.59148	1	7150	7150		65.803	2.4969	1	1379300			27216	15011	22278	22305	30431	30431					0.06110064168478857
KYHQVVTL	8	Unmodified	_KYHQVVTL_					0	0	0		nc|ENSG00000130270|O60423-3|ATP8B3;ENSG00000130270|ENST00000310127|ATP8B3;nc|ENSG00000130270|O60423-1|ATP8B3;ATP8B3|p.L1041Ffs*14|1|0.43|ENSG00000130270|chr19:1787135-1787136|-/AA|frameshift_variant	nc|ENSG00000130270|O60423-3|ATP8B3	nc|ENSG00000130270|O60423-3|ATP8B3	MULTI-MSMS	OvCa9_classI_Rep3	3	494.2874755859375	2	494.284734	986.554916	-1.2403	-0.00061306	4.2867	0.0021188	3.0464	0.0015058	494.28670132933	84.122	2.6507	81.861	81.346	83.997	-2.261					153	54	4	0	0	0	0.59148	1	4916	4916		65.803	1.5959	1	2419900			27217	15011	22278	22305	30432	30432					0.06110064168478857
KYIDFDHVF	9	Unmodified	_KYIDFDHVF_					0	0	0		ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	ENSG00000007545|ENST00000397412|CRAMP1	MULTI-MSMS	OvCa99_classI_Rep5	1	592.2951049804688	2	592.292756	1182.57096	-1.5278	-0.00090491	-0.85276	-0.00050508	-2.3806	-0.00141	592.2921296590187	103.71	1.15	103.71	103.43	104.58	0					80	26	4	0	0	0	0.030815	2	11609	11585;11609		134.81	74.692	1	8198300			27218	906	22279	22306	30433;30434	30434					-0.013022743853071006
KYIDQKFVL	9	Unmodified	_KYIDQKFVL_					0	0	0		nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;RCOR1-PPP2R5C|2|fusion;ENSG00000078304|ENST00000694906|PPP2R5C;RCOR1-PPP2R5C|3|fusion;RCOR1-PPP2R5C|1|fusion;ENST00000467447.1_1_6:42974755-42975804:+|nuORF;ENST00000495716.1_1_3:52407964-52408519:+|nuORF;nc|ENSG00000112640|Q14738-3|PPP2R5D;nc|ENSG00000112640|Q14738-2|PPP2R5D;ENSG00000112640|ENST00000485511|PPP2R5D;nc|ENSG00000154001|Q16537-3|PPP2R5E;nc|ENSG00000154001|Q16537-2|PPP2R5E;ENSG00000154001|ENST00000337537|PPP2R5E	nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000154001|Q16537-3|PPP2R5E	nc|ENSG00000078304|Q13362-2|PPP2R5C	MULTI-MSMS	OvCa99_classI_Rep5	1	577.3387451171875	2	577.334424	1152.6543	1.8486	0.0010673	0.33412	0.0001929	2.1827	0.0012602	577.3345915307505	83.966	1.2919	83.966	83.671	84.963	0					88	30	4	0	0	0	0.0078313	1	8740	8740		180.87	62.126	1	17703000			27219	1592;5706	22280	22307	30435	30435					0.08407462062564264
KYIDYIFNV	9	Unmodified	_KYIDYIFNV_					0	0	0		nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6	nc|ENSG00000138642|Q8IVU3-2|HERC6	nc|ENSG00000138642|Q8IVU3-2|HERC6	MULTI-MSMS	OvCa99_classI_Rep5	1	587.8107299804688	2	587.810782	1173.60701	0.8027	0.00047184	0.96546	0.00056751	1.7682	0.0010393	587.8111540387368	124.2	1.149	124.2	123.92	125.07	0					42	24	3	0	0	0	0.45842	1	14324	14324		46.457	3.5925	1	835640			27220	4703	22281	22308	30436	30436					0.027151827915531612
KYIEGVSDF	9	Unmodified	_KYIEGVSDF_					0	0	0		nc|ENSG00000197429|Q9Y573-2|IPP;ENSG00000197429|ENST00000396478|IPP	nc|ENSG00000197429|Q9Y573-2|IPP	nc|ENSG00000197429|Q9Y573-2|IPP	MULTI-MSMS	OvCa99_classI_Rep5	1	529.2653198242188	2	529.263665	1056.51278	2.1596	0.001143	0.12007	6.3546E-05	2.2797	0.0012065	529.2636650441112	86.014	1.137	86.014	85.624	86.761	0					59	27	5	0	0	0	0.055627	1	9042	9042		115.49	30.579	1	5929900			27221	8711	22282	22309	30437	30437					-0.013219560305742561
KYIESPVLF	9	Unmodified	_KYIESPVLF_					0	0	0		ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	MULTI-MSMS	OvCa99_classI_Rep5	1	548.3090209960938	2	548.307875	1094.6012	1.1365	0.00062315	0.95267	0.00052236	2.0892	0.0011455	548.3083297500901	109.35	0.97687	109.35	109.02	110	0					44	21	4	0	0	0	0.18193	2	12380	12380;12400		79.451	4.9344	1	1085100			27222	2043	22283	22310	30438;30439	30438					0.05768084279884533
KYIHSANVL	9	Unmodified	_KYIHSANVL_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6;ENST00000483869.1_1_16:30129346-30134419:-|nuORF;ENST00000478356.5_2_16:30128576-30134273:-|nuORF;ENSG00000141639|ENST00000400384|MAPK4;nc|ENSG00000100030|P28482-2|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000100030|ENST00000215832|MAPK1;ENSG00000102882|ENST00000263025|MAPK3	ENSG00000069956|ENST00000261845|MAPK6;nc|ENSG00000100030|P28482-2|MAPK1	ENSG00000069956|ENST00000261845|MAPK6	MULTI-MSMS	OvCa99_classI_Rep5	1	522.7969970703125	2	522.795466	1043.57638	-0.8213	-0.00042937	0.71257	0.00037253	-0.10874	-5.6846E-05	522.7957050896806	53.912	1.1114	53.912	53.564	54.675	0					84	25	7	0	0	0	0.018335	2	4324	4324;4355		148.99	80.2	1	20102000			27223	1411;1997	22284	22311	30440;30441	30440					0.05633449197171103
KYIIELNHM	9	Unmodified	_KYIIELNHM_					0	0	0		nc|ENSG00000090238|P61236|YPEL3;ENSG00000090238|ENST00000398841|YPEL3;ENST00000565479.5_1_16:30104033-30107516:-|nuORF	nc|ENSG00000090238|P61236|YPEL3	nc|ENSG00000090238|P61236|YPEL3	MULTI-MSMS	OvCa99_classI_Rep5	1	580.8125610351562	2	580.810259	1159.60597	1.1504	0.00066815	0.56583	0.00032864	1.7162	0.00099679	580.8106902047476	83.693	0.63202	83.693	83.377	84.009	0					25	14	2	0	0	0	0.060996	1	8712	8712		112.41	48.204	1	1643900			27224	1833	22285	22312	30442	30442					0.032546451510143015
KYIKDDFRF	9	Unmodified	_KYIKDDFRF_					0	0	0		ENST00000581302.5_1_18:21033283-21057068:+|nuORF;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3	ENST00000581302.5_1_18:21033283-21057068:+|nuORF	ENST00000581302.5_1_18:21033283-21057068:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	616.331787109375	2	616.327131	1230.63971	0.075568	4.6575E-05	0.41298	0.00025453	0.48855	0.0003011	616.3271297261387	70.7	0.62063	70.7	70.488	71.109	0					46	15	4	0	0	0	0.094791	1	6787	6787		98.582	42.148	1	4713900			27225	2199	22286	22313	30443	30443					0.03361389914380197
KYIKDDFRF	9	Unmodified	_KYIKDDFRF_					0	0	0		ENST00000581302.5_1_18:21033283-21057068:+|nuORF;nc|ENSG00000101782|O14730-2|RIOK3;ENSG00000101782|ENST00000339486|RIOK3	ENST00000581302.5_1_18:21033283-21057068:+|nuORF	ENST00000581302.5_1_18:21033283-21057068:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	411.22235107421875	3	411.220513	1230.63971	1.1206	0.0004608	-0.60325	-0.00024807	0.51732	0.00021273	411.22014700900434	70.695	1.0575	70.695	70.408	71.466	0					78	26	6	0	0	0	0.40818	1	6808	6808		76.17	33.832	1	10053000			27226	2199	22286	22313	30444	30444					0.03361389914380197
KYIKEAVRL	9	Unmodified	_KYIKEAVRL_					0	0	0		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	MULTI-MSMS	OvCa99_classI_Rep5	1	560.34912109375	2	560.347866	1118.68118	0.35096	0.00019666	-0.68389	-0.00038322	-0.33293	-0.00018656	560.3475494017059	51.435	1.4894	51.435	51.12	52.61	0					75	34	5	0	0	0	0.014964	2	3977	3956;3977		153.04	28.956	1	8689800			27227	4811	22287	22314	30445;30446	30446					0.12658570673738723
KYIKKSIN	8	Unmodified	_KYIKKSIN_					0	0	0			REV__tr|A0A7D6ZZX0|A0A7D6ZZX0_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_21880PE=3SV=1	REV__tr|A0A7D6ZZX0|A0A7D6ZZX0_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_21880PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.7596130371094	2	497.30821	992.601866	0.15529	7.7228E-05	0.45611	0.00022683	0.6114	0.00030406	497.30775586540375	64.732	1.3557	61.247	60.921	62.276	-3.4854					54	27	4	0	0	0	0.028476	1	4707	4707		24.203	0	1	322070	+		27228	32427	22288	22315	30447	30447					0.10526923719612569
KYINTDAKF	9	Unmodified	_KYINTDAKF_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	OvCa99_classI_Rep5	1	550.2940063476562	2	550.292756	1098.57096	-0.78158	-0.0004301	0.97105	0.00053436	0.18947	0.00010426	550.2932235141029	59.175	1.3017	59.175	58.852	60.153	0					109	33	5	0	0	0	0.021573	2	5062	5062;5092		145.16	36.774	1	22662000			27229	2130	22289	22316	30448;30449	30448					0.02561725614691568
KYIPKQSFL	9	Unmodified	_KYIPKQSFL_					0	0	0		nc|ENSG00000125037|Q9P0I2-2|EMC3;ENSG00000125037|ENST00000245046|EMC3;ENST00000487465.5_1_3:10011273-10028351:-|nuORF	nc|ENSG00000125037|Q9P0I2-2|EMC3	nc|ENSG00000125037|Q9P0I2-2|EMC3	MULTI-MSMS	OvCa99_classI_Rep5	1	562.330810546875	2	562.329142	1122.64373	0.27931	0.00015706	-0.033722	-1.8963E-05	0.24558	0.0001381	562.3290849325325	69.393	0.93977	69.393	69.106	70.046	0					41	22	2	0	0	0	0.12515	1	6600	6600		90.37	8.1293	1	3092800			27230	3688	22290	22317	30450	30450					0.08731479408129417
KYIQLFME	8	Unmodified	_KYIQLFME_					0	0	0			REV__nc|ENSG00000185499|P15941-13|MUC1	REV__nc|ENSG00000185499|P15941-13|MUC1	MSMS	OvCa99_classI_Rep5	1	536.2839965820312	2	536.280803	1070.54705	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.498	1	50.498	49.998	50.998	0								0	0	0	0.27318	1	3838	3838		97.473	18.022	1		+		27231	22509	22291	22318	30451	30451					0.014601688566699522
KYIQRQETI	9	Unmodified	_KYIQRQETI_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1;MX1|p.Y275Ifs*40|1|0.05|ENSG00000157601|chr21:41441807-41441808|-/ATAATGGGCCACACACAGTGGCTCAGTCCTA|frameshift_variant	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	OvCa99_classI_Rep5	1	589.8305053710938	2	589.830037	1177.64552	-0.44507	-0.00026252	-0.30532	-0.00018008	-0.75039	-0.0004426	589.8299064770205	44.596	1.7616	44.596	44.35	46.112	0					85	39	5	0	0	0	0.025955	2	3034	3014;3034		139.97	47.007	1	14876000			27232	5904	22292	22319	30452;30453	30453					0.0638048842608896
KYIQRQQTI	9	Unmodified	_KYIQRQQTI_					0	0	0		ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENSG00000183486|ENST00000330714|MX2	ENST00000482953.5_1_21:42762449-42780157:+|nuORF	ENST00000482953.5_1_21:42762449-42780157:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	589.3370361328125	2	589.33803	1176.66151	-0.65201	-0.00038426	0.50376	0.00029689	-0.14825	-8.737E-05	589.3381970801746	41.702	0.69167	41.702	41.42	42.111	0					38	15	4	0	0	0	0.030815	1	2623	2623		134.81	30.754	1	1167600			27233	8078	22293	22320	30454	30454					0.08024194662993978
KYISGPHEL	9	Unmodified	_KYISGPHEL_					0	0	0		ENSG00000117724|ENST00000366955|CENPF;CENPF|p.T1281A|1|0.58|ENSG00000117724|chr1:214642179-214642179|A/G|missense_variant	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-MSMS	OvCa99_classI_Rep5	1	522.28125	2	522.279649	1042.54475	-1.0104	-0.00052774	0.52063	0.00027191	-0.48982	-0.00025582	522.279900304441	53.237	1.8481	53.237	52.956	54.805	0					81	43	5	0	0	0	0.084918	1	4211	4211		101.25	32.466	1	18834000			27234	3276	22294	22321	30455	30455					0.025174564432290936
KYISILLSLY	10	Unmodified	_KYISILLSLY_					0	0	0		tr|A0A553SI82|A0A553SI82_NIACIATPsynthasesubunitIOS=NialliacirculansOX=1397GN=CEQ21_14355PE=4SV=1	tr|A0A553SI82|A0A553SI82_NIACIATPsynthasesubunitIOS=NialliacirculansOX=1397GN=CEQ21_14355PE=4SV=1	tr|A0A553SI82|A0A553SI82_NIACIATPsynthasesubunitIOS=NialliacirculansOX=1397GN=CEQ21_14355PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	404.9119567871094	3	404.912797	1211.71656	2.0403	0.00082616	-4.1556	-0.0016827	-2.1153	-0.0008565	404.9110205708817	66.24	1.1195	63.294	62.857	63.976	-2.9459					44	21	3	0	0	0	0.7855	1	2696	2696		20.837	2.3061	1	49827			27235	33354	22295	22322	30456	30456					0.11917188410916424
KYISKPENL	9	Unmodified	_KYISKPENL_					0	0	0		ENSG00000102547|ENST00000409308|CAB39L;ENST00000493540.1_1_2:231678823-231682621:+|nuORF;ENSG00000135932|ENST00000258418|CAB39	ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39	ENSG00000102547|ENST00000409308|CAB39L	MULTI-MSMS	OvCa99_classI_Rep5	1	546.3095703125	2	546.308406	1090.60226	-0.23521	-0.0001285	-0.59029	-0.00032248	-0.8255	-0.00045098	546.3080854454435	51.187	1.6587	51.187	50.907	52.566	0					131	38	5	0	0	0	0.0093048	2	3934	3934;3964		172.25	33.606	1	39933000			27236	2243;4435	22296	22323	30457;30458	30457					0.060582986487816015
KYITDVVKL	9	Unmodified	_KYITDVVKL_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	OvCa99_classI_Rep5	1	539.830078125	2	539.828975	1077.6434	1.8274	0.00098647	-0.11531	-6.2249E-05	1.7121	0.00092422	539.8287749397163	87.559	1.3295	87.559	87.054	88.384	0					94	31	4	0	0	0	0.0441	1	9274	9274		123.21	16.201	1	6975400			27237	3453	22297	22324	30459	30459					0.10768059688280118
KYITKSFNF	9	Unmodified	_KYITKSFNF_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;ENST00000566021.1_1_16:14704654-14724033:-|nuORF	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-MSMS	OvCa99_classI_Rep5	1	574.3125	2	574.310949	1146.60735	2.3983	0.0013774	-1.1283	-0.00064799	1.27	0.00072937	574.3102614976654	75.301	1.1536	75.301	74.962	76.115	0					66	28	4	0	0	0	0.049969	1	7488	7488		118.74	38.804	1	9462800			27238	4870	22298	22325	30460	30460					0.03990602511407815
KYKDAANLL	9	Unmodified	_KYKDAANLL_					0	0	0		nc|ENSG00000126214|Q07866-8|KLC1;nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866-3|KLC1;nc|ENSG00000126214|Q07866|KLC1;nc|ENSG00000126214|Q07866-7|KLC1;nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-6|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1	nc|ENSG00000126214|Q07866-8|KLC1	nc|ENSG00000126214|Q07866-8|KLC1	MULTI-MSMS	OvCa99_classI_Rep5	1	518.2969970703125	2	518.295299	1034.57605	-0.8022	-0.00041577	0.44023	0.00022817	-0.36197	-0.00018761	518.2953538981981	60.015	1.4551	60.015	59.573	61.028	0					105	35	5	0	0	0	0.075543	2	5200	5200;5232		104.06	21.306	1	11366000			27239	3768	22299	22326	30461;30462	30461					0.06014029477319127
KYKDIQDKL	9	Unmodified	_KYKDIQDKL_					0	0	0		nc|ENSG00000163029|Q96SB8-2|SMC6;ENSG00000163029|ENST00000448223|SMC6;SMC6|p.E338Rfs*12|1|0.06|ENSG00000163029|chr2:17718158-17718158|T/-|frameshift_variant	nc|ENSG00000163029|Q96SB8-2|SMC6	nc|ENSG00000163029|Q96SB8-2|SMC6	MULTI-MSMS	OvCa99_classI_Rep5	1	575.8262939453125	2	575.826963	1149.63937	-0.75268	-0.00043341	0.23478	0.00013519	-0.51789	-0.00029822	575.8275935265177	44.539	0.57967	44.539	44.26	44.84	0					22	12	3	0	0	0	0.16264	1	3026	3026		82.75	7.7072	1	610490			27240	6257	22300	22327	30463	30463					0.07053970194556314
KYKGIFNGF	9	Unmodified	_KYKGIFNGF_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3;ENST00000547908.1_1_12:98989476-98991822:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	537.2936401367188	2	537.292559	1072.57057	1.5968	0.00085795	0.18052	9.6991E-05	1.7773	0.00095494	537.2926085076225	83.014	1.4406	83.014	82.694	84.135	0					93	33	4	0	0	0	0.023378	2	8633	8603;8633		143.02	63.568	1	14467000			27241	1531	22301	22328	30464;30465	30465					0.0371835068551718
KYKILLHGL	9	Unmodified	_KYKILLHGL_					0	0	0		ENST00000462934.5_1_7:6449470-6461666:-|nuORF;nc|ENSG00000164535|Q8NCG7-2|DAGLB;nc|ENSG00000164535|Q8NCG7-4|DAGLB;ENSG00000164535|ENST00000297056|DAGLB	ENST00000462934.5_1_7:6449470-6461666:-|nuORF	ENST00000462934.5_1_7:6449470-6461666:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.267578125	2	542.847502	1083.68045	-0.41433	-0.00022492	0.802	0.00043537	0.38767	0.00021045	542.8478143081716	58.974	0.1986	58.974	58.812	59.011	0					6	4	2	0	0	0	0.027462	1	5046	5046		24.203	0	1	144640			27242	6464	22302	22329	30466	30466					0.1419577602471236
KYKKSLLL	8	Unmodified	_KYKKSLLL_					0	0	0			REV__ENSG00000163328|ENST00000392552|GPR155	REV__ENSG00000163328|ENST00000392552|GPR155	MULTI-MSMS	OvCa99_classI_Rep5	1	496.83038330078125	2	496.828778	991.643003	1.4547	0.00072276	-0.073364	-3.6449E-05	1.3814	0.00068631	496.82868474743657	148.53	2.5161	148.53	148.18	150.69	0					110	50	4	0	0	0	0.56113	1	17407	17407		71.378	0	1	2754700	+		27243	20827	22303	22330	30467	30467					0.14684684759083666
KYKLGPKNL	9	Unmodified	_KYKLGPKNL_					0	0	0			REV__nc|ENSG00000196139|P42330-2|AKR1C3;REV__nc|ENSG00000227471|C9JRZ8|AKR1B15	REV__nc|ENSG00000196139|P42330-2|AKR1C3	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.2767333984375	2	530.829309	1059.64407	1.752	0.00092999	-2.2886	-0.0012148	-0.5366	-0.00028484	530.828026737299	122.61	0.59667	122.61	122.45	123.04	0					15	12	2	0	0	0	0.027418	1	14151	14151		79.451	31.535	1	104840	+		27244	22789;22982	22304	22331	30468	30468					0.11662899127986748
KYKMWYIWHIR	11	Unmodified	_KYKMWYIWHIR_					0	0	0			REV__ENST00000312814.10_1_7:112424908-112424962:-|nuORF	REV__ENST00000312814.10_1_7:112424908-112424962:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.6646118164062	3	541.958746	1622.85441	2.4009	0.0013012	-1.5311	-0.00082977	0.86984	0.00047142	541.9577341120075	89.061	0.23055	89.061	88.922	89.153	0					6	5	2	0	0	0	0.026448	1	9502	9502		9.2118	7.793	1	440560	+		27245	24361	22305	22332	30469	30469					0.06789613458522581
KYKNFASIW	9	Unmodified	_KYKNFASIW_					0	0	0		tr|A0A7D6ZW92|A0A7D6ZW92_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18080PE=4SV=1	tr|A0A7D6ZW92|A0A7D6ZW92_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18080PE=4SV=1	tr|A0A7D6ZW92|A0A7D6ZW92_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18080PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	578.813232421875	2	578.811116	1155.60768	1.9759	0.0011437	-0.21404	-0.00012389	1.7619	0.0010198	578.8109760557832	84.116	2.2372	84.116	83.757	85.994	0					146	53	6	0	0	0	0.041116	1	8764	8764		125.81	3.638	1	40063000			27246	35832	22306	22333	30470	30470					0.03610022231259791
KYKNIFTRIAP	11	Unmodified	_KYKNIFTRIAP_					0	0	0			REV__tr|A0A7D6VVJ0|A0A7D6VVJ0_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05315PE=4SV=1	REV__tr|A0A7D6VVJ0|A0A7D6VVJ0_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05315PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	450.9374694824219	3	450.934595	1349.78196	1.6146	0.00072808	3.5249	0.0015895	5.1395	0.0023176	450.9360997934693	63.19	1.2421	60.156	59.756	60.998	-3.0339					70	24	4	0	0	0	0.71831	1	2399	2399		23.378	0.81632	1	192240	+		27247	31720	22307	22334	30471	30471					0.12105602656606607
KYKTAVQT	8	Unmodified	_KYKTAVQT_					0	0	0		GCNT7|p.Y78Cfs*27|1|0.07|ENSG00000124091|chr20:56497009-56497010|AT/-|frameshift_variant;ENSG00000124091|ENST00000243913|GCNT7;nc|ENSG00000124091|Q6ZNI0|GCNT7	GCNT7|p.Y78Cfs*27|1|0.07|ENSG00000124091|chr20:56497009-56497010|AT/-|frameshift_variant	GCNT7|p.Y78Cfs*27|1|0.07|ENSG00000124091|chr20:56497009-56497010|AT/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.616943359375	2	469.768917	937.523281	-0.24215	-0.00011376	-2.9545	-0.0013879	-3.1966	-0.0015017	469.7674962278359	23.911	0.28815	23.911	23.748	24.036	0					7	5	2	0	0	0	0.028476	1	373	373		27.882	4.8398	1	30609			27248	3622	22308	22335	30472	30472					0.05202071414510101
KYLAILGSVTF	11	Unmodified	_KYLAILGSVTF_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	OvCa99_classI_Rep5	1	606.3573608398438	2	606.355357	1210.69616	2.2003	0.0013342	0.57733	0.00035007	2.7776	0.0016842	606.3557438275323	133.87	0.75842	133.87	133.58	134.34	0					37	15	4	0	0	0	0.21275	2	15563	15563;15586		78.264	29.362	1	321150			27249	3322	22309	22336	30473;30474	30473					0.09924017751086467
KYLAKHSSI	9	Unmodified	_KYLAKHSSI_					0	0	0		nc|ENSG00000130830|Q00013-3|MPP1;ENSG00000130830|ENST00000369534|MPP1;nc|ENSG00000130830|Q00013-2|MPP1;ENST00000493871.1_1_X:154012222-154014489:-|nuORF;ENST00000462825.5_1_X:154011696-154028031:-|nuORF	nc|ENSG00000130830|Q00013-3|MPP1	nc|ENSG00000130830|Q00013-3|MPP1	MULTI-MSMS	OvCa99_classI_Rep5	1	523.8037109375	2	523.803291	1045.59203	-0.29641	-0.00015526	1.6522	0.00086541	1.3558	0.00071016	524.3058680052662	32.613	0.98205	32.613	32.254	33.236	0					55	19	6	0	0	0	0.10502	1	1429	1429		95.815	21.56	1	1063700			27250	4021	22310	22337	30475	30475					0.07105735714230832
KYLDIPKML	9	Unmodified	_KYLDIPKML_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ENSG00000248746|ENST00000513398|ACTN3;ACTN4|p.M373Tfs*31|1|0.33|ENSG00000130402|chr19:38717290-38717291|-/CT|frameshift_variant;ENST00000513398.1_1_11:66314411-66328094:+|nuORF;ENST00000502692.5_1_11:66313918-66328094:+|nuORF;ENST00000554508.5_1_14:69367621-69387744:-|nuORF;ENSG00000130402|ENST00000252699|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF	nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	OvCa99_classI_Rep5	1	560.8265991210938	2	560.825378	1119.6362	2.637	0.0014789	-0.85739	-0.00048085	1.7796	0.00099807	560.8244959106977	101.17	0.79633	101.17	100.77	101.57	0					46	18	3	0	0	0	0.036986	1	11226	11226		129.42	57.544	1	2691800			27251	1464;3986	22311	22338	30476	30476					0.08117003816209944
KYLDNPNAL	9	Unmodified	_KYLDNPNAL_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	OvCa99_classI_Rep5	1	524.2789306640625	2	524.277106	1046.53966	-0.010687	-5.6028E-06	-0.36402	-0.00019085	-0.37471	-0.00019645	524.2768184982763	71.922	0.86195	71.922	71.589	72.45	0					53	19	4	0	0	0	0.094616	2	7002	6971;7002		98.629	27.334	1	12054000			27252	8694	22312	22339	30477;30478	30478					0.01825152580613576
KYLDREKAL	9	Unmodified	_KYLDREKAL_					0	0	0			REV__ENSG00000182759|ENST00000333480|MAFA	REV__ENSG00000182759|ENST00000333480|MAFA	MULTI-MSMS	OvCa99_classI_Rep5	1	568.324462890625	2	568.327131	1134.63971	-0.087092	-4.9497E-05	0.27779	0.00015787	0.19069	0.00010838	568.3270986225699	62.016	0.5923	62.016	61.743	62.335	0					24	13	2	0	0	0	0.19758	1	5504	5504		76.774	7.9873	1	1157900	+		27253	22316	22313	22340	30479	30479					0.07777389914417654
KYLEENVMRHF	11	Unmodified	_KYLEENVMRHF_					0	0	0		ENSG00000126016|ENST00000371959|AMOT;nc|ENSG00000126016|Q4VCS5-2|AMOT	ENSG00000126016|ENST00000371959|AMOT	ENSG00000126016|ENST00000371959|AMOT	MULTI-MSMS	OvCa99_classI_Rep5	1	489.2486877441406	3	489.246733	1464.71837	0.31505	0.00015414	0.10575	5.174E-05	0.42081	0.00020588	489.2464657337045	72.064	0.58153	72.064	71.792	72.374	0					39	13	4	0	0	0	0.10754	1	7015	7015		95.483	64.914	1	1376500			27254	3763	22314	22341	30480	30480					0.004598741571953724
KYLEERAMRQF	11	Unmodified	_KYLEERAMRQF_					0	0	0		nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF	nc|ENSG00000114019|Q9Y2J4-3|AMOTL2	nc|ENSG00000114019|Q9Y2J4-3|AMOTL2	MULTI-MSMS	OvCa99_classI_Rep5	1	490.923583984375	3	490.922249	1469.74492	-0.79215	-0.00038888	-0.85019	-0.00041738	-1.6423	-0.00080626	490.9221423107047	61.556	2.7293	61.556	61.245	63.974	0					184	66	6	0	0	0	0.24568	2	5440	5410;5440		73.841	12.077	1	71519000			27255	3006	22315	22342	30481;30482	30482					0.028835630485218644
KYLEESTIRHF	11	Unmodified	_KYLEESTIRHF_					0	0	0		nc|ENSG00000166025|Q8IY63-2|AMOTL1;ENSG00000166025|ENST00000433060|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	nc|ENSG00000166025|Q8IY63-2|AMOTL1	MULTI-MSMS	OvCa99_classI_Rep5	1	474.91876220703125	3	474.917381	1421.73031	0.1726	8.197E-05	-0.41579	-0.00019747	-0.2432	-0.0001155	474.91713139544294	63.584	0.8336	63.584	63.337	64.17	0					57	20	4	0	0	0	0.14211	1	5732	5732		88.134	17.735	1	4978200			27256	6629	22316	22343	30483	30483					0.036318141720357744
KYLEETNSL	9	Unmodified	_KYLEETNSL_					0	0	0		nc|ENSG00000198945|Q96JM7-2|L3MBTL3;ENSG00000198945|ENST00000361794|L3MBTL3	nc|ENSG00000198945|Q96JM7-2|L3MBTL3	nc|ENSG00000198945|Q96JM7-2|L3MBTL3	MULTI-MSMS	OvCa99_classI_Rep5	1	548.7809448242188	2	548.779679	1095.5448	-0.34685	-0.00019034	0.31373	0.00017217	-0.033116	-1.8173E-05	548.7795764438887	68.632	0.86986	68.632	68.398	69.268	0					42	20	3	0	0	0	0.084918	1	6485	6485		101.25	8.0572	1	3759100			27257	8913	22317	22344	30484	30484					0.0008541165257156536
KYLEHPLLL	9	Unmodified	_KYLEHPLLL_					0	0	0		ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	MULTI-MSMS	OvCa99_classI_Rep5	1	563.3389892578125	2	563.336967	1124.65938	2.9291	0.0016501	-0.67443	-0.00037993	2.2547	0.0012701	563.3364285540272	88.828	1.469	88.828	88.508	89.977	0					93	35	5	0	0	0	0.047062	2	9443	9443;9473		120.62	43.774	1	11833000			27258	3056	22318	22345	30485;30486	30485					0.10203765925189145
KYLFLIYHLS	10	Unmodified	_KYLFLIYHLS_					0	0	0		ENST00000328299.3_1_1:77094996-77095116:+|nuORF	ENST00000328299.3_1_1:77094996-77095116:+|nuORF	ENST00000328299.3_1_1:77094996-77095116:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	432.91680908203125	3	432.916541	1295.72779	-0.11601	-5.0221E-05	-3.2343	-0.0014002	-3.3503	-0.0014504	432.9152849032118	55.33	2.9994	52.035	51.546	54.545	-3.2944					163	58	5	0	0	0	0.64812	1	3537	3537		36.318	2.2311	1	3156400			27259	10421	22319	22346	30487	30487					0.09176010505052545
KYLFYRFLDD	10	Unmodified	_KYLFYRFLDD_					0	0	0		nc|ENSG00000091428|Q8WZA2-5|RAPGEF4;nc|ENSG00000091428|Q8WZA2-4|RAPGEF4;nc|ENSG00000091428|Q8WZA2-3|RAPGEF4;ENSG00000091428|ENST00000397081|RAPGEF4;RAPGEF4|p.E469Nfs*32|1|0.05|ENSG00000091428|chr2:172990840-172990840|G/-|frameshift_variant	nc|ENSG00000091428|Q8WZA2-5|RAPGEF4	nc|ENSG00000091428|Q8WZA2-5|RAPGEF4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	461.25714111328125	3	460.571322	1378.69214	-2.2354	-0.0010296	-1.0229	-0.0004711	-3.2583	-0.0015007	460.57074418971854	88.469	0.80365	85.867	85.679	86.483	-2.6027					37	15	3	0	0	0	0.027193	1	7564	7564		11.636	0	1	85812			27260	1869	22320	22347	30488	30488					0.017939282573706805
KYLFYRFLDD	10	Unmodified	_KYLFYRFLDD_					0	0	0		nc|ENSG00000091428|Q8WZA2-5|RAPGEF4;nc|ENSG00000091428|Q8WZA2-4|RAPGEF4;nc|ENSG00000091428|Q8WZA2-3|RAPGEF4;ENSG00000091428|ENST00000397081|RAPGEF4;RAPGEF4|p.E469Nfs*32|1|0.05|ENSG00000091428|chr2:172990840-172990840|G/-|frameshift_variant	nc|ENSG00000091428|Q8WZA2-5|RAPGEF4	nc|ENSG00000091428|Q8WZA2-5|RAPGEF4	MULTI-MATCH	OvCa9_classI_Rep2	2		3	460.571322	1378.69214	1.3748	0.0006332	-4.5102	-0.0020773	-3.1354	-0.0014441	460.5691244814374	87.452	1.0829	86.021	85.791	86.874	-1.4311	0.032661	-0.0028598	NaN	16.007	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87709			27261	1869	22320	22347							0.017939282573706805
KYLFYRFLDD	10	Unmodified	_KYLFYRFLDD_					0	0	0		nc|ENSG00000091428|Q8WZA2-5|RAPGEF4;nc|ENSG00000091428|Q8WZA2-4|RAPGEF4;nc|ENSG00000091428|Q8WZA2-3|RAPGEF4;ENSG00000091428|ENST00000397081|RAPGEF4;RAPGEF4|p.E469Nfs*32|1|0.05|ENSG00000091428|chr2:172990840-172990840|G/-|frameshift_variant	nc|ENSG00000091428|Q8WZA2-5|RAPGEF4	nc|ENSG00000091428|Q8WZA2-5|RAPGEF4	MULTI-MATCH	OvCa9_classI_Rep3	3		3	460.571322	1378.69214	-0.53777	-0.00024768	-2.5669	-0.0011822	-3.1046	-0.0014299	460.5700649115599	88.209	0.79958	86.078	85.854	86.654	-2.1309	0.089461	-0.00017469	NaN	16.007	39	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112710			27262	1869	22320	22347							0.017939282573706805
KYLGLLENL	9	Unmodified	_KYLGLLENL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;MYO1C|p.V657M|1|0.09|ENSG00000197879|chr17:1471959-1471959|C/T|missense_variant	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	OvCa99_classI_Rep5	1	532.3123779296875	2	531.813325	1061.6121	1.6383	0.00087127	0.098808	5.2547E-05	1.7371	0.00092382	531.8134048326061	118.81	0.94396	118.81	118.2	119.15	0					28	19	2	0	0	0	0.2077	2	13617	13617;13634		75.043	7.2824	1	138580			27263	8756	22321	22348	30489;30490	30489					0.08375486654176711
KYLHQEKK	8	Unmodified	_KYLHQEKK_					0	0	0		ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK;chr8:27833133-27837710|421|26.09|0.78|5.07|-|ENST00000522944|PBK,PBK	ENSG00000168078|ENST00000301905|PBK	ENSG00000168078|ENST00000301905|PBK	MULTI-MSMS	OvCa99_classI_Rep5	1	537.3087158203125	2	537.308741	1072.60293	-0.40858	-0.00021953	4.0119	0.0021556	3.6033	0.0019361	537.3108743431387	33.509	1.0267	33.509	33.039	34.065	0					49	20	4	0	0	0	0.65062	1	1571	1571		53.351	2.016	1	859210			27264	546	22322	22349	30491	30491					0.06953138088488231
KYLKKRRHMRK	11	Unmodified	_KYLKKRRHMRK_					0	0	0			REV__ENST00000472297.2_1_19:24014717-24015296:+|nuORF	REV__ENST00000472297.2_1_19:24014717-24015296:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.269287109375	3	515.320789	1542.94054	-0.36013	-0.00018558	-3.4153	-0.00176	-3.7755	-0.0019456	515.3185337214294	30.16	0.69685	30.16	29.935	30.632	0					29	13	3	0	0	0	0.026534	1	1127	1127		3.2113	0	1	97607	+		27265	26308	22323	22350	30492	30492					0.190786180838586
KYLKRKDIE	9	Unmodified	_KYLKRKDIE_					0	0	0		ENSG00000117593|ENST00000649689|DARS2;DARS2|p.H508Tfs*24|1|0.08|ENSG00000117593|chr1:173853522-173853522|T/-|frameshift_variant;DARS2|p.K558Yfs*9|1|0.05|ENSG00000117593|chr1:173853901-173853902|-/ATACTTCCAAATCA|frameshift_variant;DARS2|p.L557Sfs*56|1|0.05|ENSG00000117593|chr1:173853899-173853900|-/T|frameshift_variant	ENSG00000117593|ENST00000649689|DARS2	ENSG00000117593|ENST00000649689|DARS2	MULTI-MSMS	OvCa99_classI_Rep5	1	596.860107421875	2	596.856055	1191.69756	2.7614	0.0016482	2.977	0.0017768	5.7384	0.003425	596.8575646079304	96.09	0.71547	96.09	95.785	96.501	0					29	16	3	0	0	0	0.12515	1	10519	10519		90.37	16.115	1	731020			27266	3263	22324	22351	30493	30493					0.10937651839822138
KYLLHSLVF	9	Unmodified	_KYLLHSLVF_					0	0	0		ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF	ENSG00000087008|ENST00000356406|ACOX3	ENSG00000087008|ENST00000356406|ACOX3	MULTI-MSMS	OvCa99_classI_Rep5	1	560.3336791992188	2	560.331685	1118.64882	2.6216	0.001469	-0.71365	-0.00039988	1.908	0.0010691	560.3310097537161	99.966	1.1177	99.966	99.694	100.81	0					48	26	3	0	0	0	0.16562	2	11059	11059;11083		82.241	24.429	1	3035500			27267	1758	22325	22352	30494;30495	30494					0.09423783270767672
KYLPEWTAW	9	Unmodified	_KYLPEWTAW_					0	0	0		nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1	nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1	nc|ENSG00000080815|P49768-7|PSEN1	MULTI-MSMS	OvCa99_classI_Rep5	1	597.3038940429688	2	597.303124	1192.5917	1.4333	0.00085613	0.78253	0.00046741	2.2159	0.0013235	597.3033979389437	119.45	0.98956	119.45	119.19	120.18	0					52	23	3	0	0	0	0.13504	1	13701	13701		87.696	25.589	1	1049100			27268	1641;14901	22326	22353	30496	30496					0.0031031599437483237
KYLRRLFRF	9	Unmodified	_KYLRRLFRF_					0	0	0		ENSG00000115446|ENST00000357765|UNC50	ENSG00000115446|ENST00000357765|UNC50	ENSG00000115446|ENST00000357765|UNC50	MULTI-MSMS	OvCa99_classI_Rep5	1	433.6005859375	3	433.599658	1297.77715	-0.28189	-0.00012223	0.3067	0.00013299	0.024811	1.0758E-05	433.59971217599616	69.695	1.3747	69.695	69.347	70.722	0					98	33	4	0	0	0	0.67104	1	6636	6636		23.523	1.4472	1	2991000			27269	3099	22327	22354	30497	30497					0.14016763304493907
KYLSFWSI	8	Unmodified	_KYLSFWSI_					0	0	0		ENST00000280904.10_2_18:28671106-28672218:-|nuORF	ENST00000280904.10_2_18:28671106-28672218:-|nuORF	ENST00000280904.10_2_18:28671106-28672218:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	522.2809448242188	2	522.28166	1042.54877	-1.0104	-0.00052774	-3.3305	-0.0017395	-4.3409	-0.0022672	522.279900304441	53.237	1.8481	53.237	52.956	54.805	0					81	43	5	0	0	0	0.31378	1	4234	4234		104.75	3.4939	1	18834000			27270	10044	22328	22355	30498	30498					0.029195459369248056
KYLSISDIVL	10	Unmodified	_KYLSISDIVL_					0	0	0			REV__tr|A0A553SSD1|A0A553SSD1_NIACICircadianclockproteinKaiCOS=NialliacirculansOX=1397GN=CEQ21_02800PE=4SV=1	REV__tr|A0A553SSD1|A0A553SSD1_NIACICircadianclockproteinKaiCOS=NialliacirculansOX=1397GN=CEQ21_02800PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.2918090820312	2	575.839539	1149.66453	1.5503	0.00089272	2.4757	0.0014256	4.026	0.0023183	575.8407987394263	98.136	0.5514	98.136	97.867	98.419	0					29	12	3	0	0	0	0.027056	1	10817	10817		35.618	20.753	1	656500	+		27271	30823	22329	22356	30499	30499					0.09568024997133762
KYLSVQGQLF	10	Unmodified	_KYLSVQGQLF_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MSMS	OvCa99_classI_Rep5	1	591.8305053710938	2	591.829506	1181.64446	1.2718	0.00075272	-0.22953	-0.00013584	1.0423	0.00061688	591.829351246068	103.16	2.196	103.16	102.81	105	0					123	51	5	0	0	0	0.042975	3	11530	11503;11530;11563		131.62	18.716	1	20663000			27272	4580	22330	22357	30500;30501;30502	30501					0.06090274057191891
KYLSVQGQLF	10	Unmodified	_KYLSVQGQLF_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	591.829506	1181.64446	-0.16235	-9.6082E-05	-1.7329	-0.0010256	-1.8952	-0.0011217	591.8290363970584	104.61	0.46518	103.18	102.86	103.33	-1.4347	-0.018654	-0.0016936	NaN	131.62	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9777.8			27273	4580	22330	22357							0.06090274057191891
KYLSVQGQLF	10	Unmodified	_KYLSVQGQLF_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1;ENST00000471737.1_1_6:36936681-36938521:-|nuORF	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	591.829506	1181.64446	-0.020319	-1.2025E-05	-0.69555	-0.00041164	-0.71587	-0.00042367	591.8289097575805	105.26	0.14877	103.25	103.15	103.3	-2.0161	0.052741	-0.00046574	NaN	131.62	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4436.4			27274	4580	22330	22357							0.06090274057191891
KYLTEGLLQF	10	Unmodified	_KYLTEGLLQF_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1;NFE2L1|p.L707Tfs*5|1|0.59|ENSG00000082641|chr17:48059439-48059440|-/GA|frameshift_variant	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-MSMS	OvCa99_classI_Rep5	1	606.3387451171875	2	606.337164	1210.65977	1.2689	0.00076939	0.63492	0.00038498	1.9038	0.0011544	606.3374314729865	124.44	0.92216	124.44	124.1	125.02	0					52	19	4	0	0	0	0.26708	1	14359	14359		84.817	18.388	1	1608200			27275	1683	22331	22358	30503	30503					0.06287140854374229
KYLTLSSIKDH	11	Unmodified	_KYLTLSSIKDH_					0	0	0		ENSG00000165997|ENST00000377275|ARL5B	ENSG00000165997|ENST00000377275|ARL5B	ENSG00000165997|ENST00000377275|ARL5B	MULTI-MSMS	OvCa9_classI_Rep2	2	435.577392578125	3	435.578477	1303.7136	-3.9701	-0.0017293	1.8541	0.00080763	-2.116	-0.00092168	435.57922182732636	156.17	0.67278	155.94	155.7	156.37	-0.22696					41	19	3	0	0	0	0.72493	1	15891	15891		16.53	1.8362	1	23638			27276	6626	22332	22359	30504	30504					0.07389313286080323
KYLTSCLLIS	10	Unmodified	_KYLTSCLLIS_					0	0	0		ENST00000482393.1_1_13:103309549-103320211:+|nuORF	ENST00000482393.1_1_13:103309549-103320211:+|nuORF	ENST00000482393.1_1_13:103309549-103320211:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	570.8223876953125	2	570.820292	1139.62603	-0.297	-0.00016953	3.1685	0.0018087	2.8715	0.0016391	570.8219755050607	80.686	1.9254	78.991	78.519	80.444	-1.6951					85	37	3	0	0	0	0.40664	1	6823	6823		67.494	1.0644	1	552300			27277	12570	22333	22360	30505	30505					0.06180396090985596
KYLVIGDLLF	10	Unmodified	_KYLVIGDLLF_					0	0	0		ENST00000591770.1_1_17:76164697-76167257:+|nuORF;ENSG00000108639|ENST00000225777|SYNGR2;nc|ENSG00000108639|O43760-2|SYNGR2	ENST00000591770.1_1_17:76164697-76167257:+|nuORF	ENST00000591770.1_1_17:76164697-76167257:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	590.8527221679688	2	590.85245	1179.69035	1.3638	0.00080578	-2.409	-0.0014233	-1.0452	-0.00061756	590.8508903636731	149.63	1.5921	149.63	149.4	150.99	0					86	31	5	0	0	0	0.34811	1	17510	17510		75.043	12.936	1	2278800			27278	2669	22334	22361	30506	30506					0.1076891923939911
KYLVIGDLLF	10	Unmodified	_KYLVIGDLLF_					0	0	0		ENST00000591770.1_1_17:76164697-76167257:+|nuORF;ENSG00000108639|ENST00000225777|SYNGR2;nc|ENSG00000108639|O43760-2|SYNGR2	ENST00000591770.1_1_17:76164697-76167257:+|nuORF	ENST00000591770.1_1_17:76164697-76167257:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	590.85245	1179.69035	-5.348	-0.0031599	-1.9113	-0.0011293	-7.2593	-0.0042892	590.8513369864926	150.71	0.355	149.75	149.5	149.86	-0.95645	0.061216	0.00052875	NaN	75.043	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8323.7			27279	2669	22334	22361							0.1076891923939911
KYLYVDKNF	9	Unmodified	_KYLYVDKNF_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.A1773Sfs*19|1|0.04|ENSG00000100345|chr22:36285287-36285288|-/T|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OvCa99_classI_Rep5	1	595.3181762695312	2	595.316232	1188.61791	0.51183	0.0003047	-0.4096	-0.00024384	0.10223	6.0858E-05	595.3158888092315	72.626	1.0297	72.626	72.165	73.195	0					67	25	4	0	0	0	0.0094273	2	7105	7074;7105		171.53	91.773	1	8586100			27280	2050	22335	22362	30507;30508	30508					0.031145851658493484
KYLYVDKNF	9	Unmodified	_KYLYVDKNF_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.A1773Sfs*19|1|0.04|ENSG00000100345|chr22:36285287-36285288|-/T|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MATCH	OvCa9_classI_Rep2	2		2	595.316232	1188.61791	-1.0536	-0.0006272	0.71913	0.00042811	-0.33443	-0.00019909	595.316206810724	74.959	2.1297	72.988	72.481	74.611	-1.9711	0.060927	0.00062378	NaN	171.53	99	40	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96583			27281	2050	22335	22362							0.031145851658493484
KYLYVDKNF	9	Unmodified	_KYLYVDKNF_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.A1773Sfs*19|1|0.04|ENSG00000100345|chr22:36285287-36285288|-/T|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MATCH	OvCa9_classI_Rep3	3		2	595.316232	1188.61791	-0.16127	-9.6007E-05	-0.098743	-5.8784E-05	-0.26001	-0.00015479	595.3157917766985	75.578	1.8732	73.168	72.488	74.361	-2.4106	0.24045	-0.00035001	NaN	171.53	69	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34688			27282	2050	22335	22362							0.031145851658493484
KYMDIEFDF	9	Unmodified	_KYMDIEFDF_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000166866|ENST00000300119|MYO1A	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	OvCa99_classI_Rep5	1	604.2725219726562	2	604.270632	1206.52671	2.1417	0.0012942	-0.34091	-0.000206	1.8008	0.0010882	604.2702305005478	128.72	1.3044	128.72	128.47	129.77	0					82	27	5	0	0	0	0.014964	2	14933	14909;14933		153.04	56.845	1	1793800			27283	3897;6726	22336	22363	30509;30510	30510					-0.06829046593793464
KYMDINFDF	9	Unmodified	_KYMDINFDF_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D;nc|ENSG00000136286|B0I1T2-2|MYO1G;ENST00000483585.5_1_7:45011810-45018578:-|nuORF;ENST00000480503.5_1_7:45014700-45018578:-|nuORF;ENSG00000136286|ENST00000258787|MYO1G;MYO1G|p.N590Kfs*17|1|0.22|ENSG00000136286|chr7:44967617-44967618|-/C|frameshift_variant;nc|ENSG00000136286|B0I1T2-4|MYO1G;nc|ENSG00000136286|B0I1T2-3|MYO1G	ENSG00000176658|ENST00000318217|MYO1D;ENSG00000136286|ENST00000258787|MYO1G	ENSG00000136286|ENST00000258787|MYO1G	MULTI-MSMS	OvCa99_classI_Rep5	1	596.7724609375	2	596.7708	1191.52705	1.6018	0.00095589	0.040521	2.4182E-05	1.6423	0.00098007	596.7707501597447	124.89	2.1275	124.89	124.56	126.69	0					118	48	5	0	0	0	0.012992	3	14425	14403;14425;14449		159.28	35.196	1	10185000			27284	7620;4482	22337	22364	30511;30512;30513	30512					-0.06105626873932124
KYMDVQFDF	9	Oxidation (M)	_KYM(Oxidation (M))DVQFDF_		KYM(1)DVQFDF		KYM(51)DVQFDF	0	0	1		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	OvCa99_classI_Rep5	1	604.7699584960938	2	604.768257	1207.52196	0.95579	0.00057803	1.2431	0.00075178	2.1989	0.0013298	604.7688214704785	101.47	0.84664	101.47	101.11	101.95	0					40	19	3	0	0	0	0.40818	1	11288	11288		51.193	9.7661	1	967550			27285	8756	22338	22365	30514	30514		266			-0.07349930736563692
KYMDVQFDF	9	Oxidation (M)	_KYM(Oxidation (M))DVQFDF_					0	0	1		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MATCH	OvCa9_classI_Rep2	2		2	604.768257	1207.52196	-1.5566	-0.00094137	2.0546	0.0012425	0.49798	0.00030116	604.7694377156316	102.05	0.24836	101.29	101.16	101.41	-0.76401	-0.089508	0.00091162	NaN	51.193	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15834			27286	8756	22338	22365				266			-0.07349930736563692
KYMDVQFDF	9	Unmodified	_KYMDVQFDF_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	OvCa99_classI_Rep5	1	596.7723388671875	2	596.7708	1191.52705	1.9394	0.0011574	0.43626	0.00026035	2.3757	0.0014177	596.7709679082075	116.66	2.2091	116.66	116.32	118.53	0					124	47	4	0	0	0	0.0086667	3	13351	13331;13351;13376		209.19	37.663	1	16151000			27287	8756	22338	22366	30515;30516;30517	30516					-0.06105626873932124
KYMDVVKERI	10	Unmodified	_KYMDVVKERI_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENST00000555762.1_1_14:94517539-94521656:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	OvCa99_classI_Rep5	1	427.5738525390625	3	427.572557	1279.69584	-0.80351	-0.00034356	0.58693	0.00025096	-0.21658	-9.2603E-05	427.5726735573218	65.686	0.66904	65.686	65.426	66.096	0					48	16	5	0	0	0	0.22809	1	6036	6036		90.149	37.06	1	5695400			27288	1827	22339	22367	30518	30518					0.0671827475957798
KYMDVVKERI	10	Unmodified	_KYMDVVKERI_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENST00000555762.1_1_14:94517539-94521656:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	OvCa99_classI_Rep5	1	640.8570556640625	2	640.855198	1279.69584	-0.73517	-0.00047114	0.71902	0.00046079	-0.016148	-1.0349E-05	640.8552781433732	65.686	0.51805	65.686	65.426	65.945	0					20	12	2	0	0	0	0.48897	1	6048	6048		51.528	17.355	1	1617900			27289	1827	22339	22367	30519	30519					0.0671827475957798
KYMDVVKERI	10	Unmodified	_KYMDVVKERI_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENST00000555762.1_1_14:94517539-94521656:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MATCH	OvCa9_classI_Rep3	3		2	640.855198	1279.69584	0.66077	0.00042346	8.1376	0.005215	8.7984	0.0056385	640.8603285411277	68.338	1.0515	65.524	64.912	65.964	-2.8144	-0.081375	0.0036579	NaN	51.528	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21221			27290	1827	22339	22367							0.0671827475957798
KYMEDYHQF	9	Unmodified	_KYMEDYHQF_					0	0	0		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	OvCa99_classI_Rep5	1	630.77294921875	2	630.771331	1259.52811	0.37975	0.00023954	0.043957	2.7727E-05	0.42371	0.00026726	630.771135886423	64.652	0.7385	64.652	64.334	65.072	0					49	17	4	0	0	0	0.013371	1	5885	5885		158.07	75.834	1	3326100			27291	3330	22340	22368	30520	30520					-0.09127412505040411
KYMETIEKL	9	Unmodified	_KYMETIEKL_					0	0	0		nc|ENSG00000162869|Q6ZMI0-4|PPP1R21;nc|ENSG00000162869|Q6ZMI0-3|PPP1R21;nc|ENSG00000162869|Q6ZMI0-5|PPP1R21;nc|ENSG00000162869|Q6ZMI0-2|PPP1R21;ENSG00000162869|ENST00000294952|PPP1R21;PPP1R21-TTC7B|3|fusion;PPP1R21-TTC7B|1|fusion;PPP1R21-TTC7B|2|fusion	nc|ENSG00000162869|Q6ZMI0-4|PPP1R21	nc|ENSG00000162869|Q6ZMI0-4|PPP1R21	MULTI-MSMS	OvCa99_classI_Rep5	1	577.8114013671875	2	577.809925	1153.6053	-0.34029	-0.00019662	1.1995	0.00069311	0.85926	0.00049649	577.8103727448093	71.611	0.94081	71.611	71.308	72.249	0					61	22	4	0	0	0	0.060996	2	6926	6926;6955		112.41	15.366	1	3619000			27292	6242	22341	22369	30521;30522	30521					0.03463805711317036
KYMEVHEKASF	11	Unmodified	_KYMEVHEKASF_					0	0	0		ENSG00000076201|ENST00000265562|PTPN23;PTPN23|p.R1398Cfs*54|1|0.11|ENSG00000076201|chr3:47412295-47412296|-/TG|frameshift_variant;PTPN23|p.L1259Afs*14|1|0.14|ENSG00000076201|chr3:47411565-47411566|-/C|frameshift_variant	ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	MULTI-MSMS	OvCa99_classI_Rep5	1	456.893310546875	3	456.892067	1367.65437	0.22506	0.00010283	-0.40096	-0.00018319	-0.1759	-8.0366E-05	456.89174776092784	52.588	0.74006	52.588	52.347	53.087	0					35	16	3	0	0	0	0.4744	1	4135	4135		55.721	17.007	1	1909100			27293	1551	22342	22370	30523	30523					-0.014749059997484437
KYMKEKLLF	9	Unmodified	_KYMKEKLLF_					0	0	0		ENST00000453153.6_2_2:170428583-170430242:-|nuORF	ENST00000453153.6_2_2:170428583-170430242:-|nuORF	ENST00000453153.6_2_2:170428583-170430242:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	600.348876953125	2	600.346477	1198.6784	0.45022	0.00027029	-0.28829	-0.00017307	0.16193	9.7213E-05	600.3462102001912	67.316	1.4131	67.316	66.779	68.192	0					94	35	4	0	0	0	0.028475	2	6276	6276;6304		120.87	35.708	1	6876000			27294	12065	22343	22371	30524;30525	30524					0.08700979224568073
KYMKYEKSYRF	11	Unmodified	_KYMKYEKSYRF_					0	0	0		ENST00000538768.2_1_16:31138259-31142577:+|nuORF;ENSG00000103510|ENST00000219797|KAT8;nc|ENSG00000103510|Q9H7Z6-2|KAT8	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	ENST00000538768.2_1_16:31138259-31142577:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7858276367188	3	514.930633	1541.77007	-0.58933	-0.00030346	0.36838	0.00018969	-0.22095	-0.00011378	515.2650180207169	48.524	0.51416	48.524	48.248	48.762	0					25	11	3	0	0	0	0.026444	1	3554	3554		15.337	6.1257	1	351140			27295	2323	22344	22372	30526	30526					0.02085617851093957
KYMPNVKVAVF	11	Unmodified	_KYMPNVKVAVF_					0	0	0		ENST00000481456.1_1_6:31503008-31508408:-|nuORF;ENSG00000198563|ENST00000396172|DDX39B;nc|ENSG00000198563|Q13838-2|DDX39B	ENST00000481456.1_1_6:31503008-31508408:-|nuORF	ENST00000481456.1_1_6:31503008-31508408:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	648.3643798828125	2	648.362659	1294.71076	2.6157	0.0016959	-0.42842	-0.00027777	2.1873	0.0014182	648.3623417511451	91.645	1.7567	91.645	91.296	93.053	0					95	41	4	0	0	0	0.080408	3	9892	9863;9892;9926		101.25	44.819	1	24094000			27296	8828	22345	22373	30527;30528;30529	30528					0.0751976662756988
KYMPSVKVSVF	11	Unmodified	_KYMPSVKVSVF_					0	0	0		ENSG00000123136|ENST00000242776|DDX39A;nc|ENSG00000123136|O00148-3|DDX39A;ENST00000589318.5_1_19:14520811-14524032:-|nuORF;nc|ENSG00000123136|O00148-2|DDX39A	ENSG00000123136|ENST00000242776|DDX39A	ENSG00000123136|ENST00000242776|DDX39A	MULTI-MSMS	OvCa99_classI_Rep5	1	642.8558959960938	2	642.854667	1283.69478	2.7081	0.0017409	-0.31025	-0.00019945	2.3978	0.0015414	642.8542403744738	91.665	0.63318	91.665	91.459	92.092	0					38	14	4	0	0	0	0.1126	1	9882	9882		94.409	46.752	1	1695300			27297	3575	22346	22374	30530	30530					0.06428060390658175
KYMTAVVKL	9	Unmodified	_KYMTAVVKL_					0	0	0		ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA	ENST00000566534.5_1_16:88713161-88717421:-|nuORF	ENST00000566534.5_1_16:88713161-88717421:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	526.8134765625	2	526.81227	1051.60999	0.30734	0.00016191	-0.23215	-0.0001223	0.075188	3.961E-05	526.8121967991177	74.115	1.3412	74.115	73.868	75.209	0					112	33	5	0	0	0	0.010478	2	7330	7296;7330		167.23	23.342	1	82924000			27298	1188	22347	22375	30531;30532	30532					0.08624734644718046
KYMVNGEEM	9	Oxidation (M)	_KYMVNGEEM(Oxidation (M))_		KYMVNGEEM(1)		KYM(-57)VNGEEM(57)	0	0	1			REV__TANC1|p.T1589Ifs*85|1|0.16|ENSG00000115183|chr2:159230192-159230192|C/-|frameshift_variant	REV__TANC1|p.T1589Ifs*85|1|0.16|ENSG00000115183|chr2:159230192-159230192|C/-|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	558.74072265625	2	558.738642	1115.46273	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.188	1	97.188	96.688	97.688	0								0	0	0	0.12679	1	10669	10669		67.494	14.557	2		+		27299	18224	22348	22376	30533	30533		418			-0.09038150022388436
KYNANFVTF	9	Unmodified	_KYNANFVTF_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENST00000527157.1_1_11:66888787-66947744:+|nuORF	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MULTI-MSMS	OvCa99_classI_Rep5	1	552.2813110351562	2	552.279649	1102.54475	2.2869	0.001263	-0.46715	-0.000258	1.8198	0.001005	552.2794096549643	95.909	1.1334	95.909	95.577	96.71	0					41	26	2	0	0	0	0.022645	2	10498	10476;10498		143.89	56.132	1	12130000			27300	7350	22349	22377	30534;30535	30535					-0.0024254355678294814
KYNDNFFGL	9	Unmodified	_KYNDNFFGL_					0	0	0		ENSG00000012963|ENST00000013070|UBR7;UBR7|p.C189Wfs*3|1|0.45|ENSG00000012963|chr14:93215244-93215274|TTGTTCTTTTTTGTGGGCTTATGCTGCACAA/-|frameshift_variant	ENSG00000012963|ENST00000013070|UBR7	ENSG00000012963|ENST00000013070|UBR7	MULTI-MSMS	OvCa99_classI_Rep5	1	559.2703247070312	2	559.269281	1116.52401	2.4471	0.0013686	-0.44007	-0.00024612	2.007	0.0011225	559.268951096346	112.81	0.96969	112.81	112.48	113.45	0					66	21	5	0	0	0	0.029147	2	12856	12832;12856		136.27	34.667	1	4670600			27301	978	22350	22378	30536;30537	30537					-0.029591339364287705
KYPASSSVF	9	Unmodified	_KYPASSSVF_					0	0	0		ENSG00000260027|ENST00000239165|HOXB7	ENSG00000260027|ENST00000239165|HOXB7	ENSG00000260027|ENST00000239165|HOXB7	MULTI-MSMS	OvCa99_classI_Rep5	1	493.2541809082031	2	493.2531	984.491647	-0.1789	-8.8244E-05	-0.15211	-7.5031E-05	-0.33102	-0.00016328	493.25298102202004	68.906	0.58154	68.906	68.564	69.145	0					22	13	2	0	0	0	0.1804	1	6521	6521		79.713	13.815	1	2694900			27302	9489	22351	22379	30538	30538					-0.0012192133942789951
KYPDAVATW	9	Unmodified	_KYPDAVATW_					0	0	0		CON__P31096;ENST00000505146.1_1_4:88898047-88901296:+|nuORF;ENST00000508002.5_1_4:88896921-88901631:+|nuORF;nc|ENSG00000118785|P10451-4|SPP1;nc|ENSG00000118785|P10451-5|SPP1;ENSG00000118785|ENST00000395080|SPP1;ENST00000509659.5_1_4:88898870-88904045:+|nuORF	CON__P31096	CON__P31096	MULTI-MSMS	OvCa99_classI_Rep5	1	525.7684326171875	2	525.766374	1049.5182	1.9037	0.0010009	0.36224	0.00019045	2.266	0.0011914	525.766456330325	85.933	0.97	85.933	85.624	86.594	0					41	23	2	0	0	0	0.064985	1	9034	9034		110.12	19.343	1	5667600		+	27303	628	22352	22380	30539	30539					-0.004582324481134492
KYPDIISRI	9	Unmodified	_KYPDIISRI_					0	0	0		LIG1|p.T614Ifs*112|1|0.04|ENSG00000105486|chr19:48128003-48128004|-/GGAGGCGGAGGTTGCAGTGAGCTGAGATC|frameshift_variant;nc|ENSG00000105486|P18858-2|LIG1;ENSG00000105486|ENST00000263274|LIG1;nc|ENSG00000105486|P18858-3|LIG1	LIG1|p.T614Ifs*112|1|0.04|ENSG00000105486|chr19:48128003-48128004|-/GGAGGCGGAGGTTGCAGTGAGCTGAGATC|frameshift_variant	LIG1|p.T614Ifs*112|1|0.04|ENSG00000105486|chr19:48128003-48128004|-/GGAGGCGGAGGTTGCAGTGAGCTGAGATC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	552.8239135742188	2	552.824224	1103.63389	2.0018	0.0011066	0.29099	0.00016087	2.2928	0.0012675	552.8248166468763	87.694	1.6205	87.694	86.931	88.551	0					159	38	6	0	0	0	0.42576	1	9234	9234		49.536	6.6718	1	6785400			27304	2463	22353	22381	30540	30540					0.08622291402753035
KYPDLANFW	9	Unmodified	_KYPDLANFW_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;ENST00000549137.1_1_12:50039600-50046016:-|nuORF	nc|ENSG00000161791|Q8IVF7-2|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-MSMS	OvCa99_classI_Rep5	1	577.2891235351562	2	577.287474	1152.5604	1.2599	0.0007273	0.49233	0.00028422	1.7522	0.0010115	577.2876401549662	125	0.73159	125	124.56	125.29	0					43	16	4	0	0	0	0.025955	2	14443	14423;14443		139.97	40.596	1	1416700			27305	6138	22354	22382	30541;30542	30542					-0.009782570397419477
KYPDRVPVI	9	Unmodified	_KYPDRVPVI_					0	0	0		GABARAP|p.F103Lfs*9|1|0.05|ENSG00000170296|chr17:7240899-7240900|-/C|frameshift_variant;ENSG00000170296|ENST00000302386|GABARAP;ENSG00000139112|ENST00000266458|GABARAPL1;ENSG00000034713|ENST00000037243|GABARAPL2;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1	GABARAP|p.F103Lfs*9|1|0.05|ENSG00000170296|chr17:7240899-7240900|-/C|frameshift_variant	GABARAP|p.F103Lfs*9|1|0.05|ENSG00000170296|chr17:7240899-7240900|-/C|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	543.81982421875	2	543.818941	1085.62333	0.57419	0.00031226	-0.56446	-0.00030697	0.0097299	5.2913E-06	543.8186673995651	74.235	1.6912	74.235	73.56	75.251	0					142	42	7	0	0	0	0.03923	5	7324	7297;7324;7355;7415;7444		127.46	21.329	1	131110000			27306	1079	22355	22383	30543;30544;30545;30546;30547	30544					0.08394308748324875
KYPDSHLPTL	10	Unmodified	_KYPDSHLPTL_					0	0	0		ENSG00000120549|ENST00000376454|KIAA1217;KIAA1217|p.V1115Sfs*19|1|0.06|ENSG00000120549|chr10:24533166-24533166|G/-|frameshift_variant;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217;nc|ENSG00000120549|Q5T5P2-3|KIAA1217;nc|ENSG00000120549|Q5T5P2-4|KIAA1217;nc|ENSG00000120549|Q5T5P2-8|KIAA1217;nc|ENSG00000120549|Q5T5P2-6|KIAA1217	ENSG00000120549|ENST00000376454|KIAA1217	ENSG00000120549|ENST00000376454|KIAA1217	MULTI-MSMS	OvCa99_classI_Rep5	1	585.8118286132812	2	585.811313	1169.60807	1.9754	0.0011572	0.05972	3.4985E-05	2.0351	0.0011922	585.8112517527384	77.139	1.0436	77.139	76.757	77.801	0					57	24	4	0	0	0	0.12609	2	7776	7747;7776		107.01	32.752	1	2998700			27307	3435	22356	22384	30548;30549	30549					0.030053971604502294
KYPEIKSLM	9	Unmodified	_KYPEIKSLM_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	OvCa99_classI_Rep5	1	554.8079223632812	2	554.807185	1107.59982	1.6446	0.00091244	-0.15636	-8.675E-05	1.4883	0.00082569	554.8069567094944	79.349	2.1187	79.349	78.54	80.659	0					119	51	4	0	0	0	0.26538	1	8083	8083		66.962	1.1587	1	5170200			27308	5090	22357	22385	30550	30550					0.0503212691949102
KYPENFFL	8	Unmodified	_KYPENFFL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;PLB1-PPP1CB|1|fusion;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	nc|ENSG00000186298|P36873-2|PPP1CC	MULTI-MSMS	OvCa99_classI_Rep5	1	529.27294921875	2	529.271293	1056.52803	2.0165	0.0010673	-0.44202	-0.00023395	1.5745	0.00083334	529.2709143301529	110.62	2.1589	110.62	109.86	112.02	0					135	47	5	0	0	0	0.42649	1	12574	12574		84.916	0	1	8549300			27309	8328;7303;9139	22358	22386	30551	30551					0.002029555572789832
KYPENFFLL	9	Unmodified	_KYPENFFLL_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000172531|P62136-3|PPP1CA;PLB1-PPP1CB|1|fusion;ENST00000526510.5_1_11:67166008-67168740:-|nuORF;nc|ENSG00000172531|P62136-2|PPP1CA;ENST00000532446.5_1_11:67166008-67168991:-|nuORF;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000186298|ENST00000335007|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	ENSG00000172531|ENST00000376745|PPP1CA;nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000213639|ENST00000395366|PPP1CB	nc|ENSG00000186298|P36873-2|PPP1CC	MULTI-MSMS	OvCa99_classI_Rep5	1	585.8145141601562	2	585.813325	1169.6121	0.73185	0.00042873	0.42836	0.00025094	1.1602	0.00067966	585.8136759324592	131.89	2.4742	131.89	131.15	133.63	0					227	52	6	0	0	0	0.084918	3	15309	15285;15309;15374		101.25	12.61	1	37991000			27310	8328;7303;9139	22359	22387	30552;30553;30554	30553					0.03407486654191416
KYPFLKGAL	9	Unmodified	_KYPFLKGAL_					0	0	0		tr|A0A553SNF8|A0A553SNF8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24305PE=4SV=1	tr|A0A553SNF8|A0A553SNF8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24305PE=4SV=1	tr|A0A553SNF8|A0A553SNF8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24305PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.8088989257812	2	518.813128	1035.6117	-0.92869	-0.00048182	-4.1517	-0.0021539	-5.0804	-0.0026358	518.81101868621	89.013	3.7261	86.41	85.882	89.609	-2.6027					155	73	4	0	0	0	0.55588	1	7695	7695		37.159	5.6293	1	7911300			27311	33923	22360	22388	30555	30555					0.09532111724979586
KYPGHLAAITL	11	Unmodified	_KYPGHLAAITL_					0	0	0		ACTR5|p.Q306Rfs*29|1|0.16|ENSG00000101442|chr20:38755097-38755097|C/-|frameshift_variant;ACTR5|p.D388Afs*22|1|0.07|ENSG00000101442|chr20:38756026-38756026|A/-|frameshift_variant;ENSG00000101442|ENST00000243903|ACTR5	ACTR5|p.Q306Rfs*29|1|0.16|ENSG00000101442|chr20:38755097-38755097|C/-|frameshift_variant	ACTR5|p.Q306Rfs*29|1|0.16|ENSG00000101442|chr20:38755097-38755097|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	592.345947265625	2	592.345323	1182.67609	2.0901	0.0012381	1.0125	0.00059975	3.1026	0.0018378	592.3451631154185	85.407	0.53877	85.407	85.211	85.75	0					59	12	6	0	0	0	0.31264	1	8965	8965		67.494	14.557	1	2878900			27312	25	22361	22389	30556	30556					0.09206266811133901
KYPHLVAGA	9	Unmodified	_KYPHLVAGA_					0	0	0		ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	MULTI-MSMS	OvCa99_classI_Rep5	1	478.2728271484375	2	478.271627	954.528701	0.73263	0.0003504	-0.20563	-9.8348E-05	0.527	0.00025205	478.2715319013167	74.253	1.7299	74.253	73.678	75.407	0					122	43	5	0	0	0	0.55698	1	7336	7336		37.028	0	1	20838000			27313	7646	22362	22390	30557	30557					0.04961794996984281
KYPHYFPLL	9	Unmodified	_KYPHYFPLL_					0	0	0		ENSG00000172009|ENST00000307741|THOP1	ENSG00000172009|ENST00000307741|THOP1	ENSG00000172009|ENST00000307741|THOP1	MULTI-MSMS	OvCa99_classI_Rep5	1	589.3250122070312	2	589.32386	1176.63317	-0.60866	-0.0003587	-0.33453	-0.00019715	-0.9432	-0.00055585	589.3235401968542	104.64	1.3368	104.64	104.24	105.57	0					86	30	4	0	0	0	0.049137	2	11754	11725;11754		119.22	49.594	1	4097900			27314	7260	22363	22391	30558;30559	30559					0.05191496753695901
KYPHYFPVM	9	Unmodified	_KYPHYFPVM_					0	0	0		ENSG00000123213|ENST00000380985|NLN;ENST00000506539.5_1_5:65018131-65088776:+|nuORF;ENST00000506677.1_1_5:65076017-65081739:+|nuORF	ENSG00000123213|ENST00000380985|NLN	ENSG00000123213|ENST00000380985|NLN	MULTI-MSMS	OvCa99_classI_Rep5	1	591.2958984375	2	591.294245	1180.57394	2.6697	0.0015786	-0.88945	-0.00052593	1.7803	0.0010527	591.29386811507	88.812	0.85098	88.812	88.384	89.235	0					74	20	6	0	0	0	0.057208	3	9454	9428;9454;9486		114.59	51.052	1	8270900			27315	3583	22364	22392	30560;30561;30562	30561					-0.009127225321435617
KYPKERSHIRK	11	Unmodified	_KYPKERSHIRK_					0	0	0			REV__ENSG00000197472|ENST00000339986|ZNF695	REV__ENSG00000197472|ENST00000339986|ZNF695	MULTI-MSMS	OvCa9_classI_Rep2	2	481.283935546875	3	481.284398	1440.83137	-4.9615	-0.0023879	3.1803	0.0015306	-1.7812	-0.00085727	481.2860740283405	157.97	1.8192	157.75	157.13	158.95	-0.22696					94	52	3	0	0	0	0.72573	1	16047	16047		6.001	0.30226	1	26892	+		27316	22928	22365	22393	30563	30563					0.12858310665387762
KYPLLISRI	9	Unmodified	_KYPLLISRI_					0	0	0		YY1AP1-ARHGEF2|2|fusion;YY1AP1-ARHGEF2|3|fusion;YY1AP1-ARHGEF2|1|fusion;YY1AP1-ARHGEF2|14|fusion;YY1AP1-ARHGEF2|13|fusion;YY1AP1-ARHGEF2|8|fusion;YY1AP1-ARHGEF2|7|fusion;YY1AP1-ARHGEF2|16|fusion;YY1AP1-ARHGEF2|15|fusion;YY1AP1-ARHGEF2|4|fusion;YY1AP1-ARHGEF2|6|fusion;YY1AP1-ARHGEF2|5|fusion;YY1AP1-ARHGEF2|12|fusion;YY1AP1-ARHGEF2|11|fusion;YY1AP1-ARHGEF2|10|fusion;YY1AP1-ARHGEF2|9|fusion;ENSG00000116584|ENST00000361247|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;nc|ENSG00000116584|Q92974-3|ARHGEF2;ARHGEF2|p.D414Lfs*135|1|0.04|ENSG00000116584|chr1:155961889-155961890|-/GTAG|frameshift_variant;ENST00000474428.6_1_1:155922555-155932010:-|nuORF;ENST00000608543.1_1_1:155931890-155932010:-|nuORF;ARHGEF2-GON4L|1|fusion;ARHGEF2-GON4L|2|fusion;ARHGEF2-GON4L|3|fusion	YY1AP1-ARHGEF2|2|fusion;ARHGEF2-GON4L|1|fusion	YY1AP1-ARHGEF2|2|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	551.8540649414062	2	551.852784	1101.69102	2.1122	0.0011656	-0.1579	-8.714E-05	1.9543	0.0010785	551.8526094754586	91.669	1.9925	91.669	90.976	92.968	0					147	47	5	0	0	0	0.075618	2	9856	9821;9856		104.01	21.263	1	12124000			27317	36311;112	22366	22394	30564;30565	30565					0.14423758679117782
KYPLLLDNI	9	Unmodified	_KYPLLLDNI_					0	0	0		nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12;ENST00000529970.5_1_11:120278459-120348246:+|nuORF	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	MULTI-MSMS	OvCa99_classI_Rep5	1	544.8231811523438	2	544.82115	1087.62775	1.7238	0.00093917	1.3222	0.00072035	3.046	0.0016595	544.8217438691742	118.57	1.0369	118.57	118.11	119.15	0					60	21	4	0	0	0	0.23241	1	13603	13603		70.816	2.0294	1	557490			27318	8658	22367	22395	30566	30566					0.08743773171227076
KYPLLLKEL	9	Unmodified	_KYPLLLKEL_					0	0	0		nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1;PREX1|p.C968Wfs*56|1|0.22|ENSG00000124126|chr20:48650120-48650121|-/ACCAAGGGTCCCACTGGCTGGCCCGAAGCTGC|frameshift_variant;PREX1|p.T970Vfs*46|1|0.08|ENSG00000124126|chr20:48650116-48650117|-/CATGGTGGTGATGCAGTGCTGGGTGTAC|frameshift_variant;nc|ENSG00000146426|Q8IVF5-3|TIAM2;nc|ENSG00000146426|Q8IVF5-4|TIAM2;TIAM2|p.L1515Yfs*5|1|0.15|ENSG00000146426|chr6:155256558-155256559|-/A|frameshift_variant;ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2	nc|ENSG00000124126|Q8TCU6-3|PREX1;PREX1|p.T970Vfs*46|1|0.08|ENSG00000124126|chr20:48650116-48650117|-/CATGGTGGTGATGCAGTGCTGGGTGTAC|frameshift_variant;nc|ENSG00000146426|Q8IVF5-3|TIAM2	nc|ENSG00000124126|Q8TCU6-3|PREX1	MULTI-MSMS	OvCa99_classI_Rep5	1	558.8565673828125	2	558.854993	1115.69543	3.0156	0.0016853	-0.61324	-0.00034271	2.4024	0.0013426	558.8544510420222	94.417	1.3205	94.417	93.841	95.161	0					67	30	4	0	0	0	0.28108	1	10279	10279		65.157	0	1	1111600			27319	14997;15520;5293	22368	22396	30567	30567					0.14221223102049407
KYPLLLQSI	9	Unmodified	_KYPLLLQSI_					0	0	0		ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1;ENST00000595897.5_1_19:42402462-42407822:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	537.8324584960938	2	537.831517	1073.64848	1.8608	0.0010008	0.054941	2.9549E-05	1.9158	0.0010304	537.8314357283649	116.68	2.1535	116.68	116	118.16	0					121	46	4	0	0	0	0.03923	2	13334	13311;13334		127.46	15.051	1	2724200			27320	1560	22369	22397	30568;30569	30569					0.11460363550895636
KYPNLLNQL	9	Unmodified	_KYPNLLNQL_					0	0	0		ENST00000530657.1_1_11:85906626-85907241:+|nuORF;nc|ENSG00000168522|P49354-2|FNTA;ENSG00000168522|ENST00000302279|FNTA;ENST00000528400.1_1_8:42939784-42940422:+|nuORF	ENST00000530657.1_1_11:85906626-85907241:+|nuORF	ENST00000530657.1_1_11:85906626-85907241:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	551.818115234375	2	551.816399	1101.61824	-2.0884	-0.0011524	-0.09755	-5.3829E-05	-2.186	-0.0012062	551.8162910762125	104.31	1.7126	104.31	103.55	105.27	0					113	39	4	0	0	0	0.012034	2	11651	11651;11668		162.31	24.063	1	2988300			27321	6917	22370	22398	30570;30571	30570					0.07150004885693306
KYPNVDARL	9	Unmodified	_KYPNVDARL_					0	0	0		ENSG00000148154|ENST00000374279|UGCG	ENSG00000148154|ENST00000374279|UGCG	ENSG00000148154|ENST00000374279|UGCG	MULTI-MSMS	OvCa99_classI_Rep5	1	538.3007202148438	2	538.298373	1074.58219	0.16482	8.8721E-05	-0.70102	-0.00037736	-0.53621	-0.00028864	538.297934613525	62.67	0.8058	62.67	62.294	63.1	0					42	19	3	0	0	0	0.1243	1	5581	5581		90.601	8.3603	1	4170100			27322	5388	22371	22399	30572	30572					0.04788547708835722
KYPNVFKKI	9	Unmodified	_KYPNVFKKI_					0	0	0		nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	MULTI-MSMS	OvCa99_classI_Rep5	1	568.8467407226562	2	568.844959	1135.67537	-0.28393	-0.00016151	-0.18193	-0.00010349	-0.46587	-0.00026501	568.8447356192063	60.094	2.5611	60.094	59.265	61.826	0					173	62	4	0	0	0	0.012034	5	5226	5166;5195;5226;5257;5288		162.31	77.145	1	8513800			27323	6935	22372	22400	30573;30574;30575;30576;30577	30575					0.11295472162078113
KYPRYMNRYFK	11	Unmodified	_KYPRYMNRYFK_					0	0	0		tr|A0A7D6VNI3|A0A7D6VNI3_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12735PE=3SV=1	tr|A0A7D6VNI3|A0A7D6VNI3_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12735PE=3SV=1	tr|A0A7D6VNI3|A0A7D6VNI3_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12735PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.3084106445312	3	522.606373	1564.79729	-1.303	-0.00068096	-0.45859	-0.00023966	-1.7616	-0.00092062	522.6060000200899	50.95	0.65622	47.777	47.568	48.224	-3.1734					22	12	2	0	0	0	0.026383	1	3005	3005		8.7993	0	1	68586			27324	34708	22373	22401	30578	30578					0.03748146182124401
KYPSDLPYM	9	Unmodified	_KYPSDLPYM_					0	0	0		nc|ENSG00000157554|P11308-2|ERG;nc|ENSG00000157554|P11308-1|ERG;ENSG00000157554|ENST00000288319|ERG;nc|ENSG00000157554|P11308-3|ERG	nc|ENSG00000157554|P11308-2|ERG	nc|ENSG00000157554|P11308-2|ERG	MULTI-MSMS	OvCa99_classI_Rep5	1	557.27001953125	2	557.267893	1112.52123	2.944	0.0016406	-0.59434	-0.00033121	2.3497	0.0013094	557.2677368130519	94.228	0.55305	94.228	93.964	94.517	0					33	12	3	0	0	0	0.14998	1	10237	10237		84.916	21.609	1	3497800			27325	5899	22374	22402	30579	30579					-0.03052725385600752
KYPSDLPYM	9	Unmodified	_KYPSDLPYM_					0	0	0		nc|ENSG00000157554|P11308-2|ERG;nc|ENSG00000157554|P11308-1|ERG;ENSG00000157554|ENST00000288319|ERG;nc|ENSG00000157554|P11308-3|ERG	nc|ENSG00000157554|P11308-2|ERG	nc|ENSG00000157554|P11308-2|ERG	MULTI-MATCH	OvCa9_classI_Rep2	2		2	557.267893	1112.52123	0.38357	0.00021375	-7.3986	-0.004123	-7.015	-0.0039093	557.2636333796985	95.207	1.0403	94.179	93.873	94.913	-1.0281	-0.020295	-0.0051128	NaN	84.916	42	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30895			27326	5899	22374	22402							-0.03052725385600752
KYPSDLPYM	9	Unmodified	_KYPSDLPYM_					0	0	0		nc|ENSG00000157554|P11308-2|ERG;nc|ENSG00000157554|P11308-1|ERG;ENSG00000157554|ENST00000288319|ERG;nc|ENSG00000157554|P11308-3|ERG	nc|ENSG00000157554|P11308-2|ERG	nc|ENSG00000157554|P11308-2|ERG	MULTI-MATCH	OvCa9_classI_Rep3	3		2	557.267893	1112.52123	-1.2282	-0.00068446	-5.6224	-0.0031332	-6.8507	-0.0038177	557.2649111532547	96.038	1.2581	94.209	93.83	95.088	-1.8286	0.010193	-0.0031332	NaN	84.916	37	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51888			27327	5899	22374	22402							-0.03052725385600752
KYPSDLPYM	9	Unmodified	_KYPSDLPYM_					0	0	0		nc|ENSG00000157554|P11308-2|ERG;nc|ENSG00000157554|P11308-1|ERG;ENSG00000157554|ENST00000288319|ERG;nc|ENSG00000157554|P11308-3|ERG	nc|ENSG00000157554|P11308-2|ERG	nc|ENSG00000157554|P11308-2|ERG	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	557.267893	1112.52123	1.4328	0.00079844	-6.8218	-0.0038016	-5.389	-0.0030031	557.2644045965694	96.606	1.0023	94.18	93.964	94.966	-2.4256	-0.018964	-0.0044699	NaN	84.916	28	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54203			27328	5899	22374	22402							-0.03052725385600752
KYPSPFFV	8	Unmodified	_KYPSPFFV_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	OvCa99_classI_Rep5	1	492.76336669921875	2	492.763104	983.511654	1.6285	0.00080245	0.4777	0.00023539	2.1062	0.0010378	492.7632124295318	107.24	1.0549	107.24	106.76	107.82	0					41	24	2	0	0	0	0.64026	1	12073	12073		55.504	7.5886	1	1927000			27329	4419	22375	22403	30580	30580					0.019238743911841993
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	OvCa99_classI_Rep5	1	566.2987060546875	2	566.29731	1130.58007	2.0218	0.0011449	-0.12287	-6.9581E-05	1.8989	0.0010754	566.2973096531085	134.72	3.632	134.72	133.77	137.4	0					253	77	6	0	0	0	0.059253	9	15713	15650;15674;15713;15737;15761;15785;15827;15851;15876		113.41	41.534	1	76455000			27330	4419	22376	22404	30581;30582;30583;30584;30585;30586;30587;30588;30589	30583					0.020001189710455947
KYPSPFFVF	9	Unmodified	_KYPSPFFVF_					0	0	0		ENSG00000135829|ENST00000367549|DHX9;ENST00000485081.5_1_1:182847108-182856566:+|nuORF;nc|ENSG00000135829|Q08211-2|DHX9	ENSG00000135829|ENST00000367549|DHX9	ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.296630859375	2	566.29731	1130.58007	3.7657	0.0021325	-4.3217	-0.0024474	-0.55604	-0.00031488	566.2948114602365	134.96	1.3846	133.42	132.97	134.35	-1.5437					58	27	3	0	0	0	0.59259	1	13052	13052		32.812	1.2826	1	64161			27331	4419	22376	22404	30590	30590					0.020001189710455947
KYPVEWAKF	9	Unmodified	_KYPVEWAKF_					0	0	0		ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	MULTI-MSMS	OvCa99_classI_Rep5	1	584.3156127929688	2	584.313492	1166.61243	2.6776	0.0015645	-0.25648	-0.00014986	2.4211	0.0014147	584.3131818611272	89.578	1.1167	89.578	89.193	90.31	0					78	26	5	0	0	0	0.075618	2	9556	9556;9586		104.01	34.386	1	9963600			27332	2375	22377	22405	30591;30592	30591					0.035789063740367055
KYPVLFQRI	9	Unmodified	_KYPVLFQRI_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	OvCa99_classI_Rep5	1	582.352294921875	2	582.350409	1162.68626	2.159	0.0012573	0.28486	0.00016589	2.4438	0.0014232	582.3504573785581	90.376	1.6913	90.376	89.891	91.582	0					100	41	4	0	0	0	0.31747	2	9686	9656;9686		60.972	10.557	1	8376100			27333	7133	22378	22406	30593;30594	30594					0.11142874536380987
KYPYHLMLQ	9	Unmodified	_KYPYHLMLQ_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	OvCa9_classI_Rep3	3	596.8162231445312	2	596.812802	1191.61105	3.1335	0.0018701	2.7756	0.0016565	5.9091	0.0035267	596.8143723057162	57.305	2.9299	54.154	53.228	56.158	-3.1504					108	83	2	0	0	0	0.71696	1	1713	1713		12.207	1.3413	1	40554			27334	1754	22379	22407	30595	30595					0.022909490136271415
KYQAVTATL	9	Unmodified	_KYQAVTATL_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A;nc|ENSG00000293056|Q6NVV1|RPL13AP3;ENST00000478813.1_1_8:81177882-81177960:-|nuORF;ENST00000425147.1_1_21:26734448-26734742:+|nuORF	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MSMS	OvCa99_classI_Rep5	1	497.7836608886719	2	497.782025	993.549496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.496	1	68.496	67.996	68.996	0								0	0	0	0.12679	1	6470	6470		67.494	3.2864	1				27335	4978	22380	22408	30596	30596					0.052463405860066814
KYQDILNEI	9	Unmodified	_KYQDILNEI_					0	0	0		ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2	ENSG00000145703|ENST00000274364|IQGAP2	ENSG00000145703|ENST00000274364|IQGAP2	MULTI-MSMS	OvCa99_classI_Rep5	1	568.3088989257812	2	568.303321	1134.59209	1.9411	0.0011031	-0.40501	-0.00023017	1.5361	0.00087297	568.3029256080376	106.79	0.78577	106.79	106.32	107.1	0					42	17	4	0	0	0	0.1243	1	12028	12028		90.601	0.23104	1	3331700			27336	5238	22381	22409	30597	30597					0.030176909235706262
KYQDILNEI	9	Unmodified	_KYQDILNEI_					0	0	0		ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2	ENSG00000145703|ENST00000274364|IQGAP2	ENSG00000145703|ENST00000274364|IQGAP2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	568.303321	1134.59209	-0.26869	-0.0001527	-0.61706	-0.00035068	-0.88575	-0.00050337	568.3032983274454	107.37	0.54057	107.06	106.72	107.26	-0.30836	0.13059	-0.00026537	NaN	90.601	16	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21827			27337	5238	22381	22409							0.030176909235706262
KYQDILNEI	9	Unmodified	_KYQDILNEI_					0	0	0		ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2	ENSG00000145703|ENST00000274364|IQGAP2	ENSG00000145703|ENST00000274364|IQGAP2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	568.303321	1134.59209	-0.046846	-2.6623E-05	0.3733	0.00021215	0.32645	0.00018552	568.3037368790456	108.14	0.47318	106.94	106.69	107.17	-1.1978	0.011468	0.00086027	NaN	90.601	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29182			27338	5238	22381	22409							0.030176909235706262
KYQEEFEHF	9	Unmodified	_KYQEEFEHF_					0	0	0		ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	ENSG00000074695|ENST00000251047|LMAN1	MULTI-MSMS	OvCa99_classI_Rep5	1	628.7842407226562	2	628.782753	1255.55095	0.11319	7.1172E-05	0.34416	0.0002164	0.45735	0.00028757	628.782782603575	69.221	0.61417	69.221	68.977	69.591	0					35	14	4	0	0	0	0.041116	1	6576	6576		125.81	48.496	1	2070300			27339	1515	22382	22410	30598	30598					-0.06660070115890449
KYQEVTNNL	9	Unmodified	_KYQEVTNNL_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	OvCa99_classI_Rep5	1	554.7869262695312	2	554.785296	1107.55604	-0.38483	-0.0002135	0.98713	0.00054764	0.6023	0.00033415	554.7859038139467	59.032	1.2228	59.032	58.734	59.957	0					98	31	6	0	0	0	0.021573	2	5038	5038;5068		145.16	56.979	1	35474000			27340	4372	22383	22411	30599;30600	30599					0.006562337467130419
KYQEVTNNL	9	Unmodified	_KYQEVTNNL_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	554.785296	1107.55604	1.2163	0.00067477	1.7635	0.00097839	2.9798	0.0016532	554.7864573130882	61.898	0.69439	58.829	58.682	59.377	-3.0685	-0.10122	0.00069686	NaN	145.16	19	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8150.2			27341	4372	22383	22411							0.006562337467130419
KYQIINEEF	9	Unmodified	_KYQIINEEF_					0	0	0		ENSG00000163755|ENST00000296051|HPS3;nc|ENSG00000163755|Q969F9-2|HPS3;ENST00000486530.1_1_3:148847510-148871436:+|nuORF	ENSG00000163755|ENST00000296051|HPS3	ENSG00000163755|ENST00000296051|HPS3	MULTI-MSMS	OvCa99_classI_Rep5	1	592.3057250976562	2	592.303321	1182.59209	2.6957	0.0015967	0.082469	4.8847E-05	2.7782	0.0016455	592.3032656623517	94.092	1.0206	94.092	93.841	94.861	0					61	23	4	0	0	0	0.030867	2	10240	10217;10240		134.77	13.897	1	7441500			27342	6357	22384	22412	30601;30602	30602					0.008096909235518979
KYQKGFSLW	9	Unmodified	_KYQKGFSLW_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	OvCa99_classI_Rep5	1	578.8121948242188	2	578.811116	1155.60768	1.9759	0.0011437	-0.21404	-0.00012389	1.7619	0.0010198	578.8109760557832	84.116	2.2372	84.116	83.757	85.994	0					146	53	6	0	0	0	0.025955	2	8794	8794;8824		139.97	29.851	1	40063000			27343	1368	22385	22413	30603;30604	30603					0.03610022231282528
KYQPRIAVF	9	Unmodified	_KYQPRIAVF_					0	0	0		ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	ENSG00000139372|ENST00000392872|TDG	MULTI-MSMS	OvCa99_classI_Rep5	1	561.3284301757812	2	561.326934	1120.63931	2.7052	0.0015185	-0.93908	-0.00052713	1.7661	0.00099136	561.3263738091098	76.904	1.2763	76.904	76.48	77.757	0					96	30	5	0	0	0	0.079296	2	7769	7738;7769		102.77	41.801	1	18271000			27344	4771	22386	22414	30605;30606	30606					0.08382014985227215
KYRDVIVV	8	Unmodified	_KYRDVIVV_					0	0	0		nc|ENSG00000162929|Q6NSI8-3|SANBR;nc|ENSG00000162929|Q6NSI8-2|SANBR;ENSG00000162929|ENST00000402291|SANBR	nc|ENSG00000162929|Q6NSI8-3|SANBR	nc|ENSG00000162929|Q6NSI8-3|SANBR	MULTI-MSMS	OvCa9_classI_Rep2	2	496.3002624511719	2	496.300384	990.586216	-0.35919	-0.00017827	0.21743	0.00010791	-0.14176	-7.0356E-05	496.30031555631194	121.97	1.1373	121.75	121.47	122.61	-0.21803					58	22	4	0	0	0	0.74229	1	11838	11838		30.504	1.3541	1	202890			27345	6249	22387	22415	30607	30607					0.0905463720255284
KYRKVIDL	8	Unmodified	_KYRKVIDL_					0	0	0			REV__tr|A0A7D6VNR2|A0A7D6VNR2_9CLOTHistidinol-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_13625PE=3SV=1	REV__tr|A0A7D6VNR2|A0A7D6VNR2_9CLOTHistidinol-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_13625PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	517.8207397460938	2	517.821484	1033.62842	0.65327	0.00033828	-4.0118	-0.0020774	-3.3585	-0.0017391	517.8192290042126	150.79	1.1612	150.79	150.44	151.6	0					68	22	4	0	0	0	0.67745	1	17710	17710		47.916	3.3845	1	403000	+		27346	31201	22388	22416	30608	30608					0.1129461261095912
KYRPLFDYF	9	Unmodified	_KYRPLFDYF_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	OvCa99_classI_Rep5	1	624.825439453125	2	624.824224	1247.63389	2.6334	0.0016454	-0.62928	-0.00039319	2.0041	0.0012522	624.8236981162514	107.73	1.018	107.73	107.48	108.5	0					58	23	4	0	0	0	0.11471	2	12152	12152;12179		93.195	33.077	1	2981500			27347	8588	22389	22417	30609;30610	30609					0.01998291402742325
KYRQKFNTL	9	Unmodified	_KYRQKFNTL_					0	0	0		ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2;nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2;ITSN2|p.Q316Lfs*62|1|0.25|ENSG00000198399|chr2:24301989-24302013|GGAGGTAAAGTCAGTGGTAATGGCT/-|frameshift_variant	ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant	ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	599.3399047851562	2	599.340572	1196.66659	-0.44399	-0.0002661	0.094399	5.6577E-05	-0.34959	-0.00020952	599.3405103701343	40.07	1.3475	40.07	39.756	41.104	0					64	29	5	0	0	0	0.18193	1	2410	2410		79.451	11.957	1	1085900			27348	8815	22390	22418	30611	30611					0.07612498525622868
KYRRYHPLF	9	Unmodified	_KYRRYHPLF_					0	0	0		nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;ENST00000465814.5_1_11:72407932-72423670:-|nuORF	nc|ENSG00000186635|Q96P48-3|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	427.2406005859375	3	427.24013	1278.69856	-0.057885	-2.4731E-05	-0.17254	-7.3717E-05	-0.23043	-9.8448E-05	427.2399971634606	47.494	1.8194	47.494	47.076	48.895	0					113	41	5	0	0	0	0.31747	1	3425	3425		60.972	10.938	1	6261900			27349	8350	22391	22419	30612	30612					0.07035910999411499
KYSDITIMF	9	Unmodified	_KYSDITIMF_					0	0	0		nc|ENSG00000130005|Q14353-2|GAMT;ENSG00000130005|ENST00000252288|GAMT	nc|ENSG00000130005|Q14353-2|GAMT	nc|ENSG00000130005|Q14353-2|GAMT	MULTI-MSMS	OvCa99_classI_Rep5	1	559.283935546875	2	559.283543	1116.55253	2.5702	0.0014374	-0.13662	-7.6412E-05	2.4335	0.001361	559.2832340875505	118	0.74039	118	117.7	118.44	0					35	15	3	0	0	0	0.10363	1	13531	13531		96.19	8.494	1	1372300			27350	15009	22392	22420	30613	30613					-0.0010815235150403169
KYSDSKVE	8	Unmodified	_KYSDSKVE_					0	0	0		nc|ENSG00000138468|Q9BQF6-2|SENP7;ENSG00000138468|ENST00000394095|SENP7;nc|ENSG00000138468|Q9BQF6-4|SENP7;nc|ENSG00000138468|Q9BQF6-5|SENP7	nc|ENSG00000138468|Q9BQF6-2|SENP7	nc|ENSG00000138468|Q9BQF6-2|SENP7	MULTI-MSMS	OvCa99_classI_Rep5	1	478.2423400878906	2	478.24019	954.465826	0.49507	0.00023676	-0.3856	-0.00018441	0.10948	5.2357E-05	478.2400569799378	66.746	1.6997	66.746	66.452	68.152	0					115	42	5	0	0	0	0.48084	1	6242	6242		79.451	0	1	26673000			27351	4691	22393	22421	30614	30614					-0.013228155817046172
KYSEQAPLLF	10	Unmodified	_KYSEQAPLLF_					0	0	0			REV__ENST00000592078.1_1_18:47811607-47811793:-|nuORF	REV__ENST00000592078.1_1_18:47811607-47811793:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	598.3235473632812	2	598.321514	1194.62847	4.0482	0.0024221	-3.3757	-0.0020198	0.67253	0.00040239	598.3194309070321	131.19	0.94769	129.71	129.35	130.3	-1.4779					34	19	4	0	0	0	0.58067	1	12595	12595		44.377	0	1	45469	+		27352	27943	22394	22422	30615	30615					0.03894567820270822
KYSKRFPEL	9	Unmodified	_KYSKRFPEL_					0	0	0		nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31;ENST00000498612.1_1_19:54622012-54631467:+|nuORF;nc|ENSG00000105618|Q8WWY3-2|PRPF31	nc|ENSG00000105618|Q8WWY3-3|PRPF31;nc|ENSG00000105618|Q8WWY3-2|PRPF31	nc|ENSG00000105618|Q8WWY3-3|PRPF31	MULTI-MSMS	OvCa99_classI_Rep5	1	584.3319702148438	2	584.329673	1166.64479	-0.75821	-0.00044304	0.42921	0.0002508	-0.32899	-0.00019224	584.3298722798236	53.749	0.99036	53.749	53.432	54.422	0					59	23	4	0	0	0	0.13326	1	4283	4283		88.177	10.859	1	2789500			27353	2475;14939	22395	22423	30616	30616					0.06813693777030494
KYSLIKGNF	9	Unmodified	_KYSLIKGNF_					0	0	0		ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	ENSG00000143546|ENST00000368733|S100A8	MULTI-MSMS	OvCa99_classI_Rep5	1	535.3069458007812	2	535.305667	1068.59678	0.13924	7.4538E-05	-0.7811	-0.00041813	-0.64186	-0.00034359	535.3052875505005	70.78	2.0823	70.78	69.962	72.045	0					164	51	5	0	0	0	0.03923	5	6814	6785;6814;6844;6876;6950		127.46	45.157	1	174960000			27354	5069	22396	22424	30617;30618;30619;30620;30621	30618					0.06522619856991696
KYSLVKNK	8	Unmodified	_KYSLVKNK_					0	0	0		ENSG00000188643|ENST00000368706|S100A16;ENST00000474991.1_1_1:153580188-153585458:-|nuORF	ENSG00000188643|ENST00000368706|S100A16	ENSG00000188643|ENST00000368706|S100A16	MULTI-MSMS	OvCa99_classI_Rep5	1	490.2986755371094	2	490.300384	978.586216	-0.48117	-0.00023592	-1.822	-0.00089331	-2.3031	-0.0011292	490.299316266943	43.212	1.07	43.212	42.883	43.952	0					45	24	3	0	0	0	0.6345	1	2838	2838		56.721	3.3696	1	742810			27355	8487	22397	22425	30622	30622					0.09606637202557522
KYSLVKNKI	9	Unmodified	_KYSLVKNKI_					0	0	0		ENSG00000188643|ENST00000368706|S100A16;ENST00000474991.1_1_1:153580188-153585458:-|nuORF	ENSG00000188643|ENST00000368706|S100A16	ENSG00000188643|ENST00000368706|S100A16	MULTI-MSMS	OvCa99_classI_Rep5	1	546.84228515625	2	546.842416	1091.67028	-0.52736	-0.00028838	-0.12534	-6.8542E-05	-0.6527	-0.00035692	546.8423468927958	43.291	2.145	43.291	43.014	45.159	0					110	48	5	0	0	0	0.013607	3	2888	2832;2860;2888		157.33	66.552	1	15020000			27356	8487	22398	22426	30623;30624;30625	30625					0.12811168299458586
KYSPFVVSF	9	Unmodified	_KYSPFVVSF_					0	0	0		ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	MULTI-MSMS	OvCa99_classI_Rep5	1	537.2885131835938	2	537.286943	1072.55933	2.7005	0.001451	-0.52325	-0.00028114	2.1773	0.0011698	537.286561674576	116.02	1.2833	116.02	115.44	116.73	0					76	27	5	0	0	0	0.012051	2	13279	13279;13306		162.25	74.498	1	3836900			27357	1751	22399	22427	30626;30627	30626					0.0259552859138239
KYSQISTALQ	10	Unmodified	_KYSQISTALQ_					0	0	0			REV__tr|A0A553STT5|A0A553STT5_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_05510PE=3SV=1	REV__tr|A0A553STT5|A0A553STT5_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_05510PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	569.8095703125	2	569.808771	1137.60299	-0.10687	-6.0896E-05	-0.61868	-0.00035253	-0.72555	-0.00041343	569.8081212691537	48.223	1.3941	45.115	44.787	46.181	-3.1077					61	26	3	0	0	0	0.36605	1	2654	2654		72.879	7.4139	1	643110	+		27358	31009	22400	22428	30628	30628					0.039690932978373894
KYSSGFRNI	9	Unmodified	_KYSSGFRNI_					0	0	0		ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MSMS	OvCa99_classI_Rep5	1	536.2846069335938	2	536.282723	1070.55089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.32	1	50.32	49.82	50.82	0								0	0	0	0.022462	1	3814	3814		95.815	10.9	1				27359	5455	22401	22429	30629	30629					0.01843974674761739
KYTAQMVVA	9	Unmodified	_KYTAQMVVA_					0	0	0		ENSG00000131899|ENST00000316843|LLGL1	ENSG00000131899|ENST00000316843|LLGL1	ENSG00000131899|ENST00000316843|LLGL1	MULTI-MSMS	OvCa99_classI_Rep5	1	505.7698974609375	2	505.770603	1009.52665	0.77379	0.00039136	-2.4668	-0.0012477	-1.6931	-0.0008563	505.7692553783024	81.352	1.4901	81.352	81.162	82.652	0					78	35	4	0	0	0	0.22961	1	8401	8401		71.296	2.2027	1	6347500			27360	4096	22402	22430	30630	30630					0.022269981968747743
KYTEGVQSL	9	Unmodified	_KYTEGVQSL_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16552211-16552709:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MSMS	OvCa99_classI_Rep5	1	512.7715454101562	2	512.769114	1023.52368	-0.017173	-8.806E-06	0.0022698	1.1639E-06	-0.014904	-7.6421E-06	512.7688155790139	62.255	0.87822	62.255	61.743	62.621	0					44	20	4	0	0	0	0.075618	1	5521	5521		104.01	24.301	1	1770600			27361	1891	22403	22431	30631	30631					0.01285446343717922
KYTEGVQSL	9	Unmodified	_KYTEGVQSL_					0	0	0		ENSG00000092201|ENST00000216297|SUPT16H;ENST00000537175.1_1_12:16552211-16552709:-|nuORF	ENSG00000092201|ENST00000216297|SUPT16H	ENSG00000092201|ENST00000216297|SUPT16H	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	512.769114	1023.52368	-0.51403	-0.00026358	-3.7232	-0.0019091	-4.2372	-0.0021727	512.7670845809733	65.362	0.29089	61.877	61.791	62.082	-3.4854	-0.1893	-0.003035	NaN	104.01	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26117			27362	1891	22403	22431							0.01285446343717922
KYTEKLEE	8	Unmodified	_KYTEKLEE_					0	0	0		nc|ENSG00000106477|Q9BYV8-2|CEP41;ENSG00000106477|ENST00000223208|CEP41;ENST00000482730.1_1_7:130051992-130056799:-|nuORF;ENST00000498527.5_1_7:130050951-130080846:-|nuORF	nc|ENSG00000106477|Q9BYV8-2|CEP41	nc|ENSG00000106477|Q9BYV8-2|CEP41	MULTI-MSMS	OvCa99_classI_Rep5	1	520.2665405273438	2	520.268947	1038.52334	0.40372	0.00021004	-4.2715	-0.0022223	-3.8678	-0.0020123	520.2665765593395	131.83	1.6957	131.83	131.25	132.94	0					116	35	4	0	0	0	0.50206	1	15345	15345		77.318	5.4401	1	1907800			27363	2555	22404	22432	30632	30632					0.005620266238565819
KYTEKLEEI	9	Unmodified	_KYTEKLEEI_					0	0	0		nc|ENSG00000106477|Q9BYV8-2|CEP41;ENSG00000106477|ENST00000223208|CEP41;ENST00000482730.1_1_7:130051992-130056799:-|nuORF;ENST00000498527.5_1_7:130050951-130080846:-|nuORF	nc|ENSG00000106477|Q9BYV8-2|CEP41	nc|ENSG00000106477|Q9BYV8-2|CEP41	MULTI-MSMS	OvCa99_classI_Rep5	1	576.8126220703125	2	576.810979	1151.6074	-0.49951	-0.00028812	0.010092	5.8215E-06	-0.48941	-0.0002823	576.8110310997973	61.176	0.81261	61.176	60.73	61.542	0					49	18	4	0	0	0	0.060996	1	5372	5372		112.41	10.81	1	2656800			27364	2555	22405	22433	30633	30633					0.037665577207462775
KYTHFIQSF	9	Unmodified	_KYTHFIQSF_					0	0	0		nc|ENSG00000148288|Q8N5D6-3|GBGT1;ENSG00000148288|ENST00000372040|GBGT1	nc|ENSG00000148288|Q8N5D6-3|GBGT1	nc|ENSG00000148288|Q8N5D6-3|GBGT1	MULTI-MSMS	OvCa99_classI_Rep5	1	585.802490234375	2	585.800749	1169.58694	1.9576	0.0011468	-0.39174	-0.00022948	1.5659	0.00091729	585.8007872154774	76.45	0.76508	76.45	76.076	76.841	0					56	18	5	0	0	0	0.028475	1	7650	7650		136.99	7.3065	1	3783500			27365	5394	22406	22434	30634	30634					0.008934318516139683
KYTIKVIQTT	10	Unmodified	_KYTIKVIQTT_					0	0	0			REV__nc|ENSG00000151812|A4IF30-2|SLC35F4	REV__nc|ENSG00000151812|A4IF30-2|SLC35F4	MSMS	OvCa9_classI_Rep4_	4	597.8558349609375	2	597.858264	1193.70197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	150.22	1	148.79	148.29	149.29	-1.4344								0	0	0	0.14088	1	14835	14835		22.58	4.3176	1		+		27366	20256	22407	22435	30635	30635					0.11287116262747077
KYTKIFNDF	9	Unmodified	_KYTKIFNDF_					0	0	0		nc|ENSG00000015171|Q15326-6|ZMYND11;nc|ENSG00000015171|Q15326-3|ZMYND11;ENSG00000015171|ENST00000381604|ZMYND11;nc|ENSG00000015171|Q15326-4|ZMYND11;nc|ENSG00000015171|Q15326-5|ZMYND11;nc|ENSG00000015171|Q15326-2|ZMYND11	nc|ENSG00000015171|Q15326-6|ZMYND11	nc|ENSG00000015171|Q15326-6|ZMYND11	MULTI-MSMS	OvCa99_classI_Rep5	1	588.310302734375	2	588.308406	1174.60226	0.74547	0.00043857	0.41493	0.00024411	1.1604	0.00068268	588.3086665456802	81.356	2.4259	81.356	81.037	83.463	0					162	57	4	0	0	0	0.00038699	6	8422	8362;8392;8422;8453;8484;8513		243.29	126.39	1	117090000			27367	1002	22408	22436	30636;30637;30638;30639;30640;30641	30638					0.02194298648782933
KYTKSRDL	8	Unmodified	_KYTKSRDL_					0	0	0			REV__ENSG00000119686|ENST00000238667|FLVCR2	REV__ENSG00000119686|ENST00000238667|FLVCR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.77044677734375	2	505.785099	1009.55564	0.40557	0.00020513	-0.61877	-0.00031297	-0.2132	-0.00010783	505.78511215589174	81.207	0.25132	81.207	81.12	81.372	0					7	5	2	0	0	0	0.028476	1	8371	8371		99.375	8.5983	1	125450	+		27368	18461	22409	22437	30642	30642					0.05124858817509903
KYTKSRDL	8	Unmodified	_KYTKSRDL_					0	0	0			REV__ENSG00000119686|ENST00000238667|FLVCR2	REV__ENSG00000119686|ENST00000238667|FLVCR2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	505.785099	1009.55564	-0.084887	-4.2934E-05	0.55417	0.00028029	0.46928	0.00023736	505.7848597701225	82.747	0.68876	81.148	80.906	81.594	-1.5988	-0.019352	0.0002646	NaN	99.375	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19454	+		27369	18461	22409	22437							0.05124858817509903
KYTKSRDL	8	Unmodified	_KYTKSRDL_					0	0	0			REV__ENSG00000119686|ENST00000238667|FLVCR2	REV__ENSG00000119686|ENST00000238667|FLVCR2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	505.785099	1009.55564	-0.1259	-6.3677E-05	0.57266	0.00028964	0.44676	0.00022597	505.7854424973799	83.81	0.58089	81.147	80.877	81.458	-2.6629	-0.019973	0.00028331	NaN	99.375	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21506	+		27370	18461	22409	22437							0.05124858817509903
KYTLDDLTK	9	Unmodified	_KYTLDDLTK_					0	0	0			REV__tr|A0A7D6VS68|A0A7D6VS68_9CLOT6-phospho-beta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03725PE=3SV=1	REV__tr|A0A7D6VS68|A0A7D6VS68_9CLOT6-phospho-beta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03725PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	548.3174438476562	2	548.797872	1095.58119	-0.77081	-0.00042302	0.90895	0.00049883	0.13814	7.5809E-05	548.7976906561352	74.263	0.59418	71.825	71.471	72.065	-2.438					18	11	2	0	0	0	0.027447	1	3691	3691		66.429	0	1	14106	+		27371	31474	22410	22438	30643	30643					0.03722288549261066
KYTNWKAFL	9	Unmodified	_KYTNWKAFL_					0	0	0		nc|ENSG00000011258|Q05BQ5-3|MBTD1;ENST00000591270.1_1_17:49270805-49337516:-|nuORF;ENSG00000011258|ENST00000586178|MBTD1	nc|ENSG00000011258|Q05BQ5-3|MBTD1	nc|ENSG00000011258|Q05BQ5-3|MBTD1	MULTI-MSMS	OvCa99_classI_Rep5	1	585.8206787109375	2	585.818941	1169.62333	1.4359	0.00084117	1.1263	0.00065979	2.5621	0.001501	585.8194281015027	92.387	0.79523	92.387	92.008	92.803	0					41	18	3	0	0	0	0.1944	1	9980	9980		77.318	15.21	1	1185500			27372	959	22411	22439	30644	30644					0.04530308748326206
KYTPPPHHI	9	Unmodified	_KYTPPPHHI_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-MSMS	OvCa99_classI_Rep5	1	545.2952880859375	2	545.295633	1088.57671	-0.48618	-0.00026511	-0.46925	-0.00025588	-0.95543	-0.00052099	545.2954141368673	35.316	1.165	35.316	34.864	36.029	0					88	24	6	0	0	0	0.023378	3	1774	1750;1774;1799		143.02	60.269	1	8164200			27373	6930	22412	22440	30645;30646;30647	30646					0.03596868917043139
KYTPPPHHI	9	Unmodified	_KYTPPPHHI_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	545.295633	1088.57671	-1.972	-0.0010753	1.2953	0.00070633	-0.67664	-0.00036897	545.2961292254118	37.956	0.69041	35.246	34.977	35.667	-2.7097	0.038452	0.0018894	NaN	143.02	22	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27151			27374	6930	22412	22440							0.03596868917043139
KYTPPPHHI	9	Unmodified	_KYTPPPHHI_					0	0	0		ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	ENSG00000168653|ENST00000372969|NDUFS5	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	545.295633	1088.57671	0.12707	6.9292E-05	-1.2305	-0.00067096	-1.1034	-0.00060167	545.2947350400365	37.954	0.99329	35.061	34.741	35.734	-2.8925	-0.14675	-0.00086519	NaN	143.02	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117320			27375	6930	22412	22440							0.03596868917043139
KYTTLIAKL	9	Unmodified	_KYTTLIAKL_					0	0	0		ENST00000485009.1_1_7:115863047-115889401:+|nuORF;ENST00000461440.5_1_7:115850593-115889401:+|nuORF;nc|ENSG00000135269|Q9UGI8-2|TES;ENSG00000135269|ENST00000358204|TES	ENST00000485009.1_1_7:115863047-115889401:+|nuORF	ENST00000485009.1_1_7:115863047-115889401:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	525.8321533203125	2	525.831517	1049.64848	1.736	0.00091285	-0.23334	-0.0001227	1.5027	0.00079016	525.8311289412534	79.729	0.75615	79.729	79.436	80.192	0					44	18	4	0	0	0	0.084918	2	8135	8135;8168		101.25	49.917	1	1900800			27376	4360	22413	22441	30648;30649	30648					0.12564363550905
KYVDLTVSF	9	Unmodified	_KYVDLTVSF_					0	0	0		HEXB-UBA6|1|fusion;nc|ENSG00000033178|A0AVT1-2|UBA6;ENSG00000033178|ENST00000322244|UBA6	HEXB-UBA6|1|fusion	HEXB-UBA6|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	536.2914428710938	2	536.289682	1070.56481	2.1097	0.0011314	-0.051949	-2.786E-05	2.0577	0.0011035	536.2896135512111	110.41	0.80288	110.41	110.13	110.94	0					47	17	4	0	0	0	0.1944	1	12547	12547		77.318	14.011	1	1112400			27377	14480	22414	22442	30650	30650					0.0323520738318166
KYVENFGLI	9	Unmodified	_KYVENFGLI_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2;ENST00000561636.2_1_15:43423309-43423531:+|nuORF	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MSMS	OvCa99_classI_Rep5	1	541.7991333007812	2	541.797675	1081.5808	2.4427	0.0013234	-2.8631	-0.0015512	-0.42044	-0.0002278	541.7972697958703	106.29	1.3925	106.29	105.92	107.31	0					94	31	6	0	0	0	0.16562	1	11945	11945		82.241	2.7895	1	2576100			27378	3303	22415	22443	30651	30651					0.043269136200933644
KYVENFGLI	9	Unmodified	_KYVENFGLI_					0	0	0		ENSG00000118363|ENST00000263672|SPCS2;ENST00000561636.2_1_15:43423309-43423531:+|nuORF	ENSG00000118363|ENST00000263672|SPCS2	ENSG00000118363|ENST00000263672|SPCS2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	541.797675	1081.5808	-2.8978	-0.00157	-2.5955	-0.0014063	-5.4934	-0.0029763	542.2958621824521	108.08	0.54266	106.2	106.02	106.56	-1.8785	-0.048342	0.00020541	NaN	82.241	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11101			27379	3303	22415	22443							0.043269136200933644
KYVFLGLTLL	10	Unmodified	_KYVFLGLTLL_					0	0	0		tr|A0A7D7ACD6|A0A7D7ACD6_9CLOTOligosacchariderepeatunitpolymeraseOS=ClostridiumintestinaleOX=36845GN=HZF06_18755PE=4SV=1	tr|A0A7D7ACD6|A0A7D7ACD6_9CLOTOligosacchariderepeatunitpolymeraseOS=ClostridiumintestinaleOX=36845GN=HZF06_18755PE=4SV=1	tr|A0A7D7ACD6|A0A7D7ACD6_9CLOTOligosacchariderepeatunitpolymeraseOS=ClostridiumintestinaleOX=36845GN=HZF06_18755PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	583.859130859375	2	583.862818	1165.71108	-5.3703	-0.0031355	-1.4651	-0.00085544	-6.8354	-0.0039909	583.8618452827162	155.36	1.2983	153.87	153.54	154.84	-1.4911					100	37	4	0	0	0	0.65434	1	15366	15366		35.618	10.044	1	230740			27380	36227	22416	22444	30652	30652					0.13485509619090408
KYVHLFPKL	9	Unmodified	_KYVHLFPKL_					0	0	0		SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant;ENSG00000144028|ENST00000323853|SNRNP200;SNRNP200|p.D1323Lfs*87|1|0.04|ENSG00000144028|chr2:96286347-96286348|-/AG|frameshift_variant	SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	572.8486938476562	2	572.847502	1143.68045	1.9266	0.0011036	0.23428	0.0001342	2.1609	0.0012378	572.8474098496655	76.611	1.0123	76.611	76.28	77.293	0					61	24	4	0	0	0	0.16562	1	7680	7680		82.241	13.394	1	2792500			27381	5119	22417	22445	30653	30653					0.11435776024700317
KYVINAIQVG	10	Unmodified	_KYVINAIQVG_					0	0	0		tr|A0A553SFF4|A0A553SFF4_NIACIAlpha-glucosidase/alpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_08775PE=3SV=1	tr|A0A553SFF4|A0A553SFF4_NIACIAlpha-glucosidase/alpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_08775PE=3SV=1	tr|A0A553SFF4|A0A553SFF4_NIACIAlpha-glucosidase/alpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_08775PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	552.8244018554688	2	552.824224	1103.63389	2.0018	0.0011066	0.29099	0.00016087	2.2928	0.0012675	552.8248166468763	87.694	1.6205	87.694	86.931	88.551	0					159	38	6	0	0	0	0.59703	1	9262	9262		42.396	3.1433	1	6785400			27382	33033	22418	22446	30654	30654					0.08622291402753035
KYVKDFHKF	9	Unmodified	_KYVKDFHKF_					0	0	0		ENSG00000196081|ENST00000418100|ZNF724	ENSG00000196081|ENST00000418100|ZNF724	ENSG00000196081|ENST00000418100|ZNF724	MULTI-MSMS	OvCa99_classI_Rep5	1	606.3323364257812	2	606.332216	1210.64988	-0.58157	-0.00035262	0.54722	0.0003318	-0.034345	-2.0824E-05	606.3323749959834	42.1	0.55898	42.1	41.853	42.412	0					31	12	3	0	0	0	0.046778	1	2675	2675		120.87	39.343	1	1699100			27383	8560	22419	22447	30655	30655					0.05297997639627283
KYVKDFHKF	9	Unmodified	_KYVKDFHKF_					0	0	0		ENSG00000196081|ENST00000418100|ZNF724	ENSG00000196081|ENST00000418100|ZNF724	ENSG00000196081|ENST00000418100|ZNF724	MULTI-MSMS	OvCa99_classI_Rep5	1	404.5569763183594	3	404.557236	1210.64988	0.51807	0.00020959	-0.70751	-0.00028623	-0.18944	-7.6639E-05	404.556971685712	42.089	0.55898	42.089	41.853	42.412	0					24	12	2	0	0	0	0.28934	1	2692	2692		80.455	16.921	1	12154000			27384	8560	22419	22447	30656	30656					0.05297997639627283
KYVKGLISI	9	Unmodified	_KYVKGLISI_					0	0	0		nc|ENSG00000118965|Q9P2L0|WDR35;ENSG00000118965|ENST00000281405|WDR35	nc|ENSG00000118965|Q9P2L0|WDR35	nc|ENSG00000118965|Q9P2L0|WDR35	MULTI-MSMS	OvCa99_classI_Rep5	1	510.8287048339844	2	510.826235	1019.63792	1.9131	0.00097724	0.30531	0.00015596	2.2184	0.0011332	510.82626641743315	78.69	0.89646	78.69	78.415	79.311	0					49	21	4	0	0	0	0.10502	1	7975	7975		95.815	42.464	1	3656000			27385	3334	22420	22448	30657	30657					0.1288838089649289
KYVKGLISI	9	Unmodified	_KYVKGLISI_					0	0	0		nc|ENSG00000118965|Q9P2L0|WDR35;ENSG00000118965|ENST00000281405|WDR35	nc|ENSG00000118965|Q9P2L0|WDR35	nc|ENSG00000118965|Q9P2L0|WDR35	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	510.826235	1019.63792	-0.94744	-0.00048398	-0.50278	-0.00025683	-1.4502	-0.00074081	510.82586712162305	81.304	0.24546	78.593	78.494	78.739	-2.7106	-0.048525	-0.00079601	NaN	95.815	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7757.1			27386	3334	22420	22448							0.1288838089649289
KYVKIFDNF	9	Unmodified	_KYVKIFDNF_					0	0	0		nc|ENSG00000005801|O14628-4|ZNF195;nc|ENSG00000005801|O14628-7|ZNF195;nc|ENSG00000005801|O14628-5|ZNF195;nc|ENSG00000005801|O14628-6|ZNF195;ENSG00000005801|ENST00000399602|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	nc|ENSG00000005801|O14628-4|ZNF195	MULTI-MSMS	OvCa99_classI_Rep5	1	587.3200073242188	2	587.318774	1172.623	1.7133	0.0010062	0.70352	0.00041319	2.4168	0.0014194	587.3190339263978	90.618	1.2477	90.618	90.421	91.668	0					76	30	5	0	0	0	0.024645	1	9719	9719		141.52	45.705	1	9552400			27387	858	22421	22449	30658	30658					0.043588890284581794
KYVKILYDF	9	Unmodified	_KYVKILYDF_					0	0	0		ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000527832.5_1_11:724661-726978:+|nuORF;nc|ENSG00000177106|Q9H6S3-2|EPS8L2;ENST00000531393.5_1_11:721935-726978:+|nuORF	ENST00000526909.5_1_11:710402-726978:+|nuORF	ENST00000526909.5_1_11:710402-726978:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	594.8378295898438	2	594.8368	1187.65905	2.5779	0.0015334	0.31813	0.00018923	2.896	0.0017226	594.8368146296689	94.802	0.68312	94.802	94.56	95.244	0					43	15	4	0	0	0	0.10502	1	10321	10321		95.815	15.361	1	2654700			27388	7660	22422	22450	30659	30659					0.07272346205309077
KYVKVFHKF	9	Unmodified	_KYVKVFHKF_					0	0	0		ENSG00000172687|ENST00000683779|ZNF738;ENST00000594254.1_1_19:21565732-21566473:+|nuORF;ENSG00000229676|ENST00000456783|ZNF492;ENSG00000197360|ENST00000357774|ZNF98;nc|ENSG00000146757|Q03936-3|ZNF92;nc|ENSG00000146757|Q03936-2|ZNF92;ENSG00000268696|ENST00000600766|ZNF723;ENSG00000183850|ENST00000597761|ZNF730;ENST00000600766.1_3_19:23032061-23041232:+|nuORF;ENSG00000146757|ENST00000328747|ZNF92;ENST00000600692.5_1_19:21350445-21366834:+|nuORF;ENSG00000196705|ENST00000311048|ZNF431	ENSG00000172687|ENST00000683779|ZNF738;ENST00000600692.5_1_19:21350445-21366834:+|nuORF	ENST00000600692.5_1_19:21350445-21366834:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	598.351806640625	2	598.352951	1194.69135	0.70643	0.00042269	-0.98036	-0.0005866	-0.27393	-0.00016391	598.3523377147576	45.566	0.91091	45.566	45.332	46.242	0					46	20	4	0	0	0	0.19758	1	3156	3156		76.774	21.998	1	1933000			27389	8644;7313	22423	22451	30660	30660					0.1017917839897109
KYVKVKVNF	9	Unmodified	_KYVKVKVNF_					0	0	0		nc|ENSG00000073712|Q96AC1-2|FERMT2;ENSG00000073712|ENST00000341590|FERMT2;nc|ENSG00000073712|Q96AC1-3|FERMT2	nc|ENSG00000073712|Q96AC1-2|FERMT2	nc|ENSG00000073712|Q96AC1-2|FERMT2	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.3033447265625	2	562.844959	1123.67537	0.52589	0.000296	-0.80085	-0.00045075	-0.27495	-0.00015476	562.8444768326051	57.076	0.52058	57.076	56.833	57.353	0					28	11	3	0	0	0	0.027462	1	4768	4768		35.618	20.753	1	648540			27390	1498	22424	22452	30661	30661					0.11847472162094164
KYVPAIAHL	9	Unmodified	_KYVPAIAHL_					0	0	0		CPVL|p.V418Ffs*24|1|0.38|ENSG00000106066|chr7:29030646-29030646|T/-|frameshift_variant;ENSG00000106066|ENST00000265394|CPVL	CPVL|p.V418Ffs*24|1|0.38|ENSG00000106066|chr7:29030646-29030646|T/-|frameshift_variant	CPVL|p.V418Ffs*24|1|0.38|ENSG00000106066|chr7:29030646-29030646|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	506.3041076660156	2	506.302927	1010.5913	0.41337	0.00020929	0.22757	0.00011522	0.64094	0.00032451	506.302880214695	74.004	0.72253	74.004	73.755	74.478	0					50	18	4	0	0	0	0.13818	2	7279	7279;7308		86.935	42.818	1	8690600			27391	678	22425	22453	30662;30663	30662					0.08642941065158993
KYVPWAIL	8	Unmodified	_KYVPWAIL_					0	0	0		ENST00000404155.1_1_6:3177457-3179994:-|nuORF	ENST00000404155.1_1_6:3177457-3179994:-|nuORF	ENST00000404155.1_1_6:3177457-3179994:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.29205322265625	2	495.294571	988.574589	0.55198	0.00027339	-4.4444	-0.0022013	-3.8924	-0.0019279	495.29207447088186	141.57	0.73334	140.1	139.82	140.55	-1.4627					26	13	3	0	0	0	0.73288	1	13825	13825		35.201	0	1	63124			27392	11449	22426	22454	30664	30664					0.07984440179222929
KYVSGEFRF	9	Unmodified	_KYVSGEFRF_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MSMS	OvCa99_classI_Rep5	1	566.7939453125	2	566.792924	1131.57129	2.4831	0.0014074	-0.82118	-0.00046544	1.6619	0.00094195	566.7923596053536	74.977	1.6028	74.977	74.635	76.238	0					102	39	5	0	0	0	0.021573	2	7423	7423;7450		145.16	48.965	1	15014000			27393	3680	22427	22455	30665;30666	30665					0.01077145334556917
KYVSSVLSF	9	Unmodified	_KYVSSVLSF_					0	0	0		nc|ENSG00000198862|O94822-3|LTN1;ENSG00000198862|ENST00000361371|LTN1	nc|ENSG00000198862|O94822-3|LTN1	nc|ENSG00000198862|O94822-3|LTN1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.2852783203125	2	515.2844	1028.55425	1.9408	0.0010001	0.33494	0.00017259	2.2757	0.0011726	515.2842793034987	100.39	0.66399	100.39	100.11	100.77	0					30	15	3	0	0	0	0.12515	1	11132	11132		90.37	31.588	1	1719700			27394	15262	22428	22456	30667	30667					0.04111224728740126
KYWDVPPPGF	10	Unmodified	_KYWDVPPPGF_					0	0	0		ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2;U2AF2-POLR2E|1|fusion	ENSG00000063244|ENST00000308924|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	MULTI-MSMS	OvCa99_classI_Rep5	1	603.3045654296875	2	603.303124	1204.5917	2.1249	0.0012819	-0.017108	-1.0321E-05	2.1077	0.0012716	603.8046381545558	112.99	3.5867	112.99	111.16	114.74	0					164	80	3	0	0	0	0.5675	2	12846	12846;12893		45.972	4.319	1	1182000			27395	1288	22429	22457	30668;30669	30668					-0.002416840056412184
LAAAALEQQ	9	Unmodified	_LAAAALEQQ_					0	0	0			REV__ENSG00000146830|ENST00000678049|GIGYF1	REV__ENSG00000146830|ENST00000678049|GIGYF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	457.7518615722656	2	457.750724	913.486896	-0.86166	-0.00039442	-2.4326	-0.0011135	-3.2943	-0.001508	457.7509740711609	48.557	1.5026	45.449	45.09	46.592	-3.1077					82	28	4	0	0	0	0.12365	1	2678	2678		90.777	0	1	863230	+		27396	16084	22430	22458	30670	30670					0.026691945177958587
LAAAALEQQ	9	Unmodified	_LAAAALEQQ_					0	0	0			REV__ENSG00000146830|ENST00000678049|GIGYF1	REV__ENSG00000146830|ENST00000678049|GIGYF1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	457.750724	913.486896	0.0359	1.6433E-05	-0.55434	-0.00025375	-0.51844	-0.00023732	457.75057529838784	48.305	1.0455	45.595	45.231	46.277	-2.7097	0.073091	0.00064222	NaN	90.777	49	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81833	+		27397	16084	22430	22458							0.026691945177958587
LAAAALEQQ	9	Unmodified	_LAAAALEQQ_					0	0	0			REV__ENSG00000146830|ENST00000678049|GIGYF1	REV__ENSG00000146830|ENST00000678049|GIGYF1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	457.750724	913.486896	-0.86166	-0.00039442	-2.4326	-0.0011135	-3.2943	-0.001508	457.7509740711609	48.557	1.5026	45.449	45.09	46.592	-3.1077	-0.073091	-0.0010774	NaN	90.777	82	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	863230	+		27398	16084	22430	22458							0.026691945177958587
LAAAAPPTR	9	Unmodified	_LAAAAPPTR_					0	0	0			REV__ENSG00000112787|ENST00000680143|FBRSL1	REV__ENSG00000112787|ENST00000680143|FBRSL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	434.7313232421875	2	434.255977	866.497401	0.15453	6.7104E-05	2.8867	0.0012536	3.0412	0.0013207	434.25704380737454	54.285	0.78876	54.285	53.929	54.718	0					24	18	2	0	0	0	0.027433	1	4391	4391		47.916	1.9636	1	136310	+		27399	18118	22431	22459	30671	30671					0.05881221962897598
LAAACASRDGY	11	Unmodified	_LAAACASRDGY_					0	0	0		ENST00000531788.5_1_6:135756348-135768167:-|nuORF;nc|ENSG00000135541|Q8N157-2|AHI1;ENSG00000135541|ENST00000265602|AHI1	ENST00000531788.5_1_6:135756348-135768167:-|nuORF	ENST00000531788.5_1_6:135756348-135768167:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7877807617188	2	549.255848	1096.49714	0.65185	0.00035803	-1.6617	-0.00091271	-1.0099	-0.00055468	549.2546242773428	140.06	0.85246	140.06	139.83	140.68	0					34	17	3	0	0	0	0.025605	1	16377	16377		63.534	8.7575	1	285850			27400	4389	22432	22460	30672	30672					-0.04724565819265081
LAAALGEAEP	10	Unmodified	_LAAALGEAEP_					0	0	0		ENSG00000090061|ENST00000389879|CCNK;nc|ENSG00000090061|O75909-4|CCNK	ENSG00000090061|ENST00000389879|CCNK	ENSG00000090061|ENST00000389879|CCNK	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.80963134765625	2	471.250557	940.486562	0.73305	0.00034545	-1.2429	-0.00058571	-0.50983	-0.00024026	471.2488494990295	63.386	0.27735	63.386	63.219	63.496	0					8	6	2	0	0	0	0.026752	1	5692	5692		27.882	0	1	76852			27401	1832	22433	22461	30673	30673					0.013937747979412052
LAAAPAFALPL	11	Unmodified	_LAAAPAFALPL_					0	0	0			REV__FOXL1|p.G120Efs*147|1|0.08|ENSG00000176678|chr16:86579081-86579082|-/AACATTCA|frameshift_variant	REV__FOXL1|p.G120Efs*147|1|0.08|ENSG00000176678|chr16:86579081-86579082|-/AACATTCA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2749633789062	2	527.81841	1053.62227	-1.1451	-0.00060438	-2.6338	-0.0013902	-3.7788	-0.0019945	527.8169619497068	34.328	0.33053	34.328	34.161	34.491	0					9	6	2	0	0	0	0.025652	1	1643	1643		31.955	11.008	1	60994	+		27402	21962	22434	22462	30674	30674					0.09760094379407747
LAAARLAAAS	10	Unmodified	_LAAARLAAAS_					0	0	0		ENSG00000167004|ENST00000300289|PDIA3;ENST00000469684.1_1_15:44038662-44048907:+|nuORF;ENST00000471856.1_1_1:146649692-146651075:+|nuORF	ENSG00000167004|ENST00000300289|PDIA3	ENSG00000167004|ENST00000300289|PDIA3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	457.7518615722656	2	457.774534	913.534515	0.053706	2.4585E-05	-0.45491	-0.00020825	-0.40121	-0.00018366	457.77411855471877	47.971	1.0242	44.863	44.632	45.657	-3.1077					23	19	2	0	0	0	0.026936	1	2678	2678		84.916	2.675	1	41938			27403	6746	22435	22463	30675	30675					0.07428893508642886
LAADGSAELLH	11	Unmodified	_LAADGSAELLH_					0	0	0			REV__ENSG00000107731|ENST00000335350|UNC5B	REV__ENSG00000107731|ENST00000335350|UNC5B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.8433837890625	2	548.785296	1095.55604	-1.4922	-0.00081889	1.1315	0.00062097	-0.36065	-0.00019792	548.785670657914	72.817	1.258	69.421	69.156	70.414	-3.3961					72	25	4	0	0	0	0.025909	1	5593	5593		19.997	0	1	450920	+		27404	17854	22436	22464	30676	30676					0.012082337467063553
LAADYLCCD	9	Unmodified	_LAADYLCCD_					0	0	0		sp|P09722|US22_HCMVAEarlynuclearproteinHWLF1OS=Humancytomegalovirus(strainAD169)OX=10360GN=US22PE=3SV=2;sp|F5HDC7|US22_HCMVMTegumentproteinUS22OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US22PE=3SV=1	sp|P09722|US22_HCMVAEarlynuclearproteinHWLF1OS=Humancytomegalovirus(strainAD169)OX=10360GN=US22PE=3SV=2	sp|P09722|US22_HCMVAEarlynuclearproteinHWLF1OS=Humancytomegalovirus(strainAD169)OX=10360GN=US22PE=3SV=2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.24853515625	2	493.701528	985.388504	0.75929	0.00037486	2.2674	0.0011194	3.0266	0.0014943	493.7023302736147	96.55	0.6029	94.125	93.913	94.516	-2.4256					15	11	2	0	0	0	0.027462	1	8568	8568		23.042	0	1	30284			27405	32861	22437	22465	30677	30677					-0.1047749311392181
LAAFGHML	8	Unmodified	_LAAFGHML_					0	0	0		ENSG00000185133|ENST00000331075|INPP5J;ENST00000461241.1_1_22:31523357-31529733:+|nuORF;nc|ENSG00000185133|Q15735-3|INPP5J;nc|ENSG00000185133|Q15735-2|INPP5J	ENSG00000185133|ENST00000331075|INPP5J	ENSG00000185133|ENST00000331075|INPP5J	MULTI-SECPEP	OvCa9_classI_Rep2	2	429.9303894042969	2	430.228374	858.442194	0.56047	0.00024113	2.3607	0.0010157	2.9212	0.0012568	430.22907229971815	42.093	0.78967	39.384	39.177	39.966	-2.7097					19	15	2	0	0	0	0.028476	1	2239	2239		33.493	0	1	21155			27406	8228	22438	22466	30678	30678					0.007310921707698981
LAAFINKF	8	Unmodified	_LAAFINKF_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.9379577636719	2	462.271096	922.527639	-1.609	-0.0007438	-3.0427	-0.0014066	-4.6517	-0.0021504	462.2693762721587	45.41	0.6255	42.372	42.127	42.752	-3.0385					14	11	2	0	0	0	0.028476	1	2318	2318		39.021	24.357	1	32397			27407	6494	22439	22467	30679	30679					0.0632758062808989
LAAGFQWYL	9	Unmodified	_LAAGFQWYL_					0	0	0		ENSG00000059588|ENST00000040877|TARBP1;ENST00000484454.1_1_1:234534119-234536616:-|nuORF;ENST00000462259.5_1_1:234527325-234536616:-|nuORF	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.7781372070312	2	534.779285	1067.54402	-1.2405	-0.0006634	-3.5113	-0.0018778	-4.7518	-0.0025412	534.7774103718646	76.653	3.4334	73.714	73.27	76.703	-2.9389					191	71	5	0	0	0	0.11842	1	6127	6127		92.191	6.8311	1	12000000			27408	1254	22440	22468	30680	30680					0.012946617941679506
LAAGKSLLFE	10	Unmodified	_LAAGKSLLFE_					0	0	0			REV__TANC1|p.T1589Ifs*85|1|0.16|ENSG00000115183|chr2:159230192-159230192|C/-|frameshift_variant	REV__TANC1|p.T1589Ifs*85|1|0.16|ENSG00000115183|chr2:159230192-159230192|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	524.8046875	2	524.8055	1047.59645	0.75625	0.00039688	-1.5948	-0.00083698	-0.83859	-0.0004401	524.8046333600537	91.954	3.2465	90.719	90.272	93.519	-1.2355					182	62	5	0	0	0	0.044571	9	8163	8146;8152;8157;8163;8169;8175;8181;8193;8212		131.03	14.686	1	5304800	+		27409	18224	22441	22469	30681;30682;30683;30684;30685;30686;30687;30688;30689	30684					0.07455200137133033
LAAGKSLLFE	10	Unmodified	_LAAGKSLLFE_					0	0	0			REV__TANC1|p.T1589Ifs*85|1|0.16|ENSG00000115183|chr2:159230192-159230192|C/-|frameshift_variant	REV__TANC1|p.T1589Ifs*85|1|0.16|ENSG00000115183|chr2:159230192-159230192|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	524.8056030273438	2	524.8055	1047.59645	-1.7559	-0.00092148	0.090516	4.7503E-05	-1.6653	-0.00087398	524.8054976909301	92.637	3.4	90.676	90.197	93.597	-1.9617					189	68	5	0	0	0	0.068739	8	5908	5872;5878;5908;5915;5939;5946;5959;5965		122.18	16.364	1	8798500	+		27410	18224	22441	22469	30690;30691;30692;30693;30694;30695;30696;30697	30692					0.07455200137133033
LAAGKSLLFE	10	Unmodified	_LAAGKSLLFE_					0	0	0			REV__TANC1|p.T1589Ifs*85|1|0.16|ENSG00000115183|chr2:159230192-159230192|C/-|frameshift_variant	REV__TANC1|p.T1589Ifs*85|1|0.16|ENSG00000115183|chr2:159230192-159230192|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.805419921875	2	524.8055	1047.59645	-1.2668	-0.00066484	0.27215	0.00014283	-0.99469	-0.00052202	524.8056155005146	93.196	3.165	90.689	90.412	93.577	-2.5072					175	64	5	0	0	0	0.12609	2	8172	8172;8237		107.01	13.812	1	7764100	+		27411	18224	22441	22469	30698;30699	30698					0.07455200137133033
LAAGPSARLL	10	Unmodified	_LAAGPSARLL_					0	0	0		ENST00000282096.8_1_11:14665308-14793517:+|nuORF	ENST00000282096.8_1_11:14665308-14793517:+|nuORF	ENST00000282096.8_1_11:14665308-14793517:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	484.7980651855469	2	484.798009	967.581465	0.22924	0.00011113	-0.80006	-0.00038787	-0.57082	-0.00027673	484.7977670768121	96.694	2.3628	95.735	94.933	97.296	-0.95857					93	47	4	0	0	0	0.55359	1	8734	8734		47.657	0	1	1346100			27412	10054	22442	22470	30700	30700					0.09637753059791976
LAAHKSPFSR	10	Unmodified	_LAAHKSPFSR_					0	0	0			REV__ENSG00000148123|ENST00000374874|PLPPR1	REV__ENSG00000148123|ENST00000374874|PLPPR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.7923583984375	2	557.311815	1112.60908	3.186	0.0017756	-2.1168	-0.0011797	1.0692	0.00059588	557.3105792601305	90.057	0.7409	90.057	89.763	90.504	0					37	17	3	0	0	0	0.026826	1	9655	9655		36.447	3.6343	1	2664300	+		27413	20089	22443	22471	30701	30701					0.057276563200503006
LAAIEYELKK	10	Unmodified	_LAAIEYELKK_					0	0	0		tr|A0A553SJX9|A0A553SJX9_NIACIAminopeptidasePfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_17755PE=4SV=1	tr|A0A553SJX9|A0A553SJX9_NIACIAminopeptidasePfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_17755PE=4SV=1	tr|A0A553SJX9|A0A553SJX9_NIACIAminopeptidasePfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_17755PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	589.3494262695312	2	589.344989	1176.67542	2.0879	0.0012305	0.45159	0.00026614	2.5395	0.0014967	589.3450778885775	95.355	0.41959	95.355	95.119	95.538	0					22	9	3	0	0	0	0.55359	1	10405	10405		47.657	3.5405	1	1402700			27414	33551	22444	22472	30702	30702					0.09415427371413898
LAAIIEHLYR	10	Unmodified	_LAAIIEHLYR_					0	0	0		ENSG00000047365|ENST00000303965|ARAP2	ENSG00000047365|ENST00000303965|ARAP2	ENSG00000047365|ENST00000303965|ARAP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.2189636230469	3	400.236274	1197.68699	1.216	0.0004867	-1.6112	-0.00064487	-0.39519	-0.00015817	400.2355675998418	44.797	0.80337	44.797	44.528	45.332	0					49	17	4	0	0	0	0.02678	1	3043	3043		59.931	29.362	1	700860			27415	1143	22445	22473	30703	30703					0.0960566918540735
LAAILDLARG	10	Unmodified	_LAAILDLARG_					0	0	0		ENSG00000117154|ENST00000251296|IGSF21	ENSG00000117154|ENST00000251296|IGSF21	ENSG00000117154|ENST00000251296|IGSF21	MULTI-MSMS	OvCa9_classI_Rep2	2	506.8118896484375	2	506.811116	1011.60768	-0.19535	-9.9005E-05	-0.46138	-0.00023383	-0.65673	-0.00033284	506.81088140623655	72.437	2.0408	69.929	69.537	71.578	-2.5071					74	38	2	0	0	0	0.28845	1	5880	5880		82.241	2.5279	1	1427900			27416	3241	22446	22474	30704	30704					0.1023402223128187
LAAKFKAL	8	Unmodified	_LAAKFKAL_					0	0	0			REV__tr|A0A553SLD3|A0A553SLD3_NIACIATP-dependentDNAhelicaseOS=NialliacirculansOX=1397GN=CEQ21_20305PE=4SV=1	REV__tr|A0A553SLD3|A0A553SLD3_NIACIATP-dependentDNAhelicaseOS=NialliacirculansOX=1397GN=CEQ21_20305PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	431.2829895019531	2	431.281463	860.548374	1.8157	0.00078309	0.24146	0.00010414	2.0572	0.00088723	431.2814861154707	148.53	0.8329	148.53	148.28	149.11	0					25	16	2	0	0	0	0.75661	1	17389	17389		19.36	2.655	1	93593	+		27417	30211	22447	22475	30705	30705					0.11252171007743073
LAALALLSTLH	11	Unmodified	_LAALALLSTLH_					0	0	0			REV__ENSG00000068001|ENST00000357750|HYAL2	REV__ENSG00000068001|ENST00000357750|HYAL2	MULTI-MSMS	OvCa9_classI_Rep2	2	561.8460693359375	2	561.847699	1121.68084	-3.2197	-0.001809	-0.49496	-0.00027809	-3.7146	-0.002087	561.8472802195274	152.47	1.17	152.24	151.83	153	-0.22697					70	23	4	0	0	0	0.72499	1	15567	15567		15.642	1.5047	1	142980	+		27418	16844	22448	22476	30706	30706					0.12487150953893433
LAALKAGR	8	Unmodified	_LAALKAGR_					0	0	0		MDN1|p.H1818R|1|0.63|ENSG00000112159|chr6:89727852-89727852|T/C|missense_variant	MDN1|p.H1818R|1|0.63|ENSG00000112159|chr6:89727852-89727852|T/C|missense_variant	MDN1|p.H1818R|1|0.63|ENSG00000112159|chr6:89727852-89727852|T/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.9039306640625	2	400.261062	798.507572	1.5293	0.00061211	-0.85078	-0.00034053	0.67849	0.00027157	400.26072101834586	32.179	0.44644	32.179	31.906	32.353	0					13	8	2	0	0	0	0.028476	1	1370	1370		8.8223	0.59103	1	38148			27419	14827	22449	22477	30707	30707					0.10025829688129306
LAALLGVERA	10	Unmodified	_LAALLGVERA_					0	0	0		ENSG00000160932|ENST00000292494|LY6E	ENSG00000160932|ENST00000292494|LY6E	ENSG00000160932|ENST00000292494|LY6E	MULTI-MSMS	OvCa9_classI_Rep2	2	506.8117980957031	2	506.811116	1011.60768	-0.19535	-9.9005E-05	-0.46138	-0.00023383	-0.65673	-0.00033284	506.81088140623655	72.437	2.0408	69.929	69.537	71.578	-2.5071					74	38	2	0	0	0	0.32926	1	5892	5892		77.318	5.4401	1	1427900			27420	6104	22450	22478	30708	30708					0.1023402223128187
LAALLGVERA	10	Unmodified	_LAALLGVERA_					0	0	0		ENSG00000160932|ENST00000292494|LY6E	ENSG00000160932|ENST00000292494|LY6E	ENSG00000160932|ENST00000292494|LY6E	MULTI-MSMS	OvCa9_classI_Rep3	3	506.8115539550781	2	506.811116	1011.60768	-0.44114	-0.00022357	0.073781	3.7393E-05	-0.36736	-0.00018618	506.8111165678339	72.595	2.3799	69.993	69.521	71.901	-2.6023					124	47	4	0	0	0	0.086943	1	3494	3494		116.9	1.4095	1	1583400			27421	6104	22450	22478	30709	30709					0.1023402223128187
LAALMKLPVT	10	Unmodified	_LAALMKLPVT_					0	0	0		tr|A0A553SIY9|A0A553SIY9_NIACITransketolaseOS=NialliacirculansOX=1397GN=tktPE=3SV=1	tr|A0A553SIY9|A0A553SIY9_NIACITransketolaseOS=NialliacirculansOX=1397GN=tktPE=3SV=1	tr|A0A553SIY9|A0A553SIY9_NIACITransketolaseOS=NialliacirculansOX=1397GN=tktPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.810791015625	2	528.827921	1055.64129	-2.0776	-0.0010987	-3.4914	-0.0018463	-5.569	-0.0029451	528.8253271326047	62.153	0.59297	59.394	59.038	59.631	-2.7593					17	11	2	0	0	0	0.026931	1	4607	4607		23.523	13.817	1	17903			27422	33442	22451	22479	30710	30710					0.11569307678814766
LAALRRQAAR	10	Unmodified	_LAALRRQAAR_					0	0	0		ENST00000355083.9_1_3:52931309-52931540:-|nuORF	ENST00000355083.9_1_3:52931309-52931540:-|nuORF	ENST00000355083.9_1_3:52931309-52931540:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.3201293945312	2	563.351806	1124.68906	-3.4711	-0.0019555	1.7939	0.0010106	-1.6772	-0.00094486	563.3526768291488	155.95	1.0883	154.46	153.97	155.06	-1.4911					49	32	2	0	0	0	0.027088	1	15448	15448		26.693	5.746	1	20000			27423	10671	22452	22480	30711	30711					0.13170142713852329
LAAMKRSFE	9	Oxidation (M)	_LAAM(Oxidation (M))KRSFE_		LAAM(1)KRSFE		LAAM(85)KRSFE	0	0	1			REV__tr|A0A553SK49|A0A553SK49_NIACITetratricopeptiderepeatproteinOS=NialliacirculansOX=1397GN=CEQ21_18195PE=4SV=1	REV__tr|A0A553SK49|A0A553SK49_NIACITetratricopeptiderepeatproteinOS=NialliacirculansOX=1397GN=CEQ21_18195PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	534.7781372070312	2	534.778959	1067.54336	0.17246	9.2226E-05	-4.4184	-0.0023629	-4.246	-0.0022707	534.7766830786852	75.665	3.912	73.254	72.919	76.831	-2.4106					230	76	5	0	0	0	0.14739	1	3889	3889		85.359	11.385	1	12370000	+		27424	30077	22453	22481	30712	30712		659			0.012294990828195296
LAANAKVRGT	10	Unmodified	_LAANAKVRGT_					0	0	0			REV__ENSG00000140955|ENST00000315906|ADAD2	REV__ENSG00000140955|ENST00000315906|ADAD2	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.798583984375	2	500.79854	999.582528	-2.9685	-0.0014866	2.7229	0.0013636	-0.24564	-0.00012302	500.7998390995193	149.78	1.7039	148.35	147.52	149.23	-1.4344					90	34	4	0	0	0	0.73378	1	14767	14767		26.693	0	1	346200	+		27425	19708	22454	22482	30713	30713					0.08271967428709104
LAANGWTLKN	10	Unmodified	_LAANGWTLKN_					0	0	0		ENST00000434856.1_1_1:120144028-120151554:+|nuORF	ENST00000434856.1_1_1:120144028-120151554:+|nuORF	ENST00000434856.1_1_1:120144028-120151554:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	544.2990112304688	2	544.298373	1086.58219	0.37477	0.00020399	2.9716	0.0016175	3.3464	0.0018214	544.299673732713	92.131	1.7141	90.896	90.272	91.987	-1.2355					65	23	4	0	0	0	0.19075	1	8203	8203		95.815	2.6197	1	540920			27426	11852	22455	22483	30714	30714					0.042365477088424086
LAAPGARSLL	10	Unmodified	_LAAPGARSLL_					0	0	0			REV__ENSG00000148672|ENST00000277865|GLUD1	REV__ENSG00000148672|ENST00000277865|GLUD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.79901123046875	2	484.798009	967.581465	0.089874	4.3571E-05	-0.69983	-0.00033928	-0.60995	-0.0002957	484.79781846303956	98.297	1.9447	95.919	95.47	97.414	-2.3786					88	37	5	0	0	0	0.3976	1	8735	8735		68.787	0	1	1577700	+		27427	20119	22456	22484	30715	30715					0.09637753059814713
LAAPGHLLL	9	Unmodified	_LAAPGHLLL_					0	0	0			REV__ENST00000401766.6_2_17:28545150-28545855:-|nuORF	REV__ENST00000401766.6_2_17:28545150-28545855:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	452.7857971191406	2	452.78437	903.554188	0.28966	0.00013115	2.186	0.00098979	2.4757	0.0011209	452.78519628339916	101.67	0.81049	101.67	101.36	102.17	0					46	18	4	0	0	0	0.32242	1	11330	11330		60.404	0	1	2410900	+		27428	25414	22457	22485	30716	30716					0.09855269519437115
LAAPLRHAER	10	Unmodified	_LAAPLRHAER_					0	0	0		ENSG00000150471|ENST00000683033|ADGRL3	ENSG00000150471|ENST00000683033|ADGRL3	ENSG00000150471|ENST00000683033|ADGRL3	MULTI-MSMS	OvCa9_classI_Rep3	3	567.329833984375	2	567.330539	1132.64652	-3.474	-0.0019709	2.1482	0.0012187	-1.3258	-0.00075219	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.74374	1	12125	12125		25.574	2.9944	1	458690			27429	5508	22458	22486	30717	30717					0.08550747585650242
LAAPLVWIL	9	Unmodified	_LAAPLVWIL_					0	0	0		ENSG00000183128|ENST00000369783|CALHM3	ENSG00000183128|ENST00000369783|CALHM3	ENSG00000183128|ENST00000369783|CALHM3	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3148498535156	2	498.318046	994.621539	0.13626	6.7901E-05	-4.3129	-0.0021492	-4.1766	-0.0020813	498.3155716071176	112.96	0.84042	111.52	111.16	112	-1.4461					41	16	3	0	0	0	0.61768	1	10464	10464		29.842	0	1	145370			27430	8052	22459	22487	30718	30718					0.12401299730356641
LAAPSPRPPL	10	Unmodified	_LAAPSPRPPL_					0	0	0			REV__nc|ENSG00000170836|O15297-2|PPM1D	REV__nc|ENSG00000170836|O15297-2|PPM1D	MULTI-MSMS	OvCa9_classI_Rep3	3	509.8033447265625	2	509.805834	1017.59712	-1.3099	-0.00066782	-2.9211	-0.0014892	-4.231	-0.002157	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.70152	1	11118	11118		30.318	3.5216	1	99460	+		27431	21565	22460	22488	30719	30719					0.08902039576844345
LAAPSRECLET	11	Carbamidomethyl (C)	_LAAPSREC(Carbamidomethyl (C))LET_	LAAPSREC(1)LET		LAAPSREC(60)LET		0	1	0			REV__ENST00000557619.5_1_14:24035015-24036327:-|nuORF	REV__ENST00000557619.5_1_14:24035015-24036327:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	624.3072509765625	2	623.808445	1245.60234	1.2528	0.00078154	0.57135	0.00035641	1.8242	0.001138	623.8086073578006	133.04	1.7337	133.04	132.6	134.34	0					70	36	4	0	0	0	0.41398	1	15444	15444		60.118	8.9256	1	1236500	+		27432	23278	22461	22489	30720	30720	276				-0.010640694135190643
LAAPVISVLLL	11	Unmodified	_LAAPVISVLLL_					0	0	0		nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	MULTI-MSMS	OvCa9_classI_Rep2	2	554.8690795898438	2	554.870643	1107.72673	-1.9281	-0.0010698	-0.68563	-0.00038043	-2.6137	-0.0014503	554.8701070642081	36.184	1.0367	33.474	33.251	34.287	-2.7097					47	20	3	0	0	0	0.72493	1	1549	1549		16.473	0.83134	1	161970			27433	5228	22462	22490	30721	30721					0.1771779613613944
LAAPVPVVPD	10	Unmodified	_LAAPVPVVPD_					0	0	0			REV__ENST00000360612.4_1_22:50356588-50356684:+|nuORF	REV__ENST00000360612.4_1_22:50356588-50356684:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	489.2747802734375	2	489.286943	976.559333	1.4668	0.00071768	-2.1169	-0.0010358	-0.65014	-0.0003181	489.2857503775162	86.178	0.98946	83.531	83.192	84.182	-2.6463					29	19	2	0	0	0	0.026552	1	7264	7264		73.975	29.858	1	54799	+		27434	24834	22463	22491	30722	30722					0.07011528591374372
LAAQKKYGKV	10	Unmodified	_LAAQKKYGKV_					0	0	0			REV__nc|ENSG00000121289|Q96ST8-2|CEP89	REV__nc|ENSG00000121289|Q96ST8-2|CEP89	MULTI-MSMS	OvCa9_classI_Rep3	3	553.3366088867188	2	553.340041	1104.66553	-6.0893	-0.0033694	1.9384	0.0010726	-4.1508	-0.0022968	553.3412907390741	155.01	0.65959	153.94	153.69	154.35	-1.073					28	14	3	0	0	0	0.71192	1	13336	13336		29.15	8.2026	1	33019	+		27435	18536	22464	22492	30723	30723					0.11738284156695045
LAAQVQLQCSP	11	Unmodified	_LAAQVQLQCSP_					0	0	0		ENST00000593156.1_1_17:73913837-73918141:-|nuORF;nc|ENSG00000188878|Q8TES7-3|FBF1;ENST00000585990.5_1_17:73916156-73934230:-|nuORF;nc|ENSG00000188878|Q8TES7-2|FBF1;nc|ENSG00000188878|Q8TES7|FBF1;nc|ENSG00000188878|Q8TES7-5|FBF1;ENSG00000188878|ENST00000636174|FBF1	ENST00000593156.1_1_17:73913837-73918141:-|nuORF	ENST00000593156.1_1_17:73913837-73918141:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	578.6278076171875	2	579.302798	1156.59104	0.32108	0.000186	-0.8695	-0.0005037	-0.54842	-0.0003177	579.3021569763887	36.001	0.8992	33.152	32.59	33.489	-2.849					22	17	2	0	0	0	0.026007	1	1217	1217		18.262	0	1	9480.2			27436	8511	22465	22493	30724	30724					0.019011532830063516
LAARALDH	8	Unmodified	_LAARALDH_					0	0	0			REV__nc|ENSG00000138029|P55084-2|HADHB	REV__nc|ENSG00000138029|P55084-2|HADHB	MULTI-MSMS	OvCa99_classI_Rep5	1	433.74749755859375	2	433.745776	865.477	2.0896	0.00090634	1.527	0.00066234	3.6166	0.0015687	433.7464505411655	74.74	1.16	74.74	74.441	75.601	0					40	28	2	0	0	0	0.57878	1	7399	7399		68.485	10.673	1	2061900	+		27437	19501	22466	22494	30725	30725					0.03888051303067641
LAARASLGH	9	Unmodified	_LAARASLGH_					0	0	0			REV__ENST00000530220.1_1_19:10461512-10463916:-|nuORF	REV__ENST00000530220.1_1_19:10461512-10463916:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	448.25738525390625	2	448.259051	894.503549	-2.462	-0.0011036	2.7472	0.0012315	0.28525	0.00012786	448.2601337945915	142.71	1.2357	141.7	141.38	142.62	-1.0102					68	24	5	0	0	0	0.64339	1	11907	11907		26.796	1.3459	1	329850	+		27438	27199	22467	22495	30726	30726					0.05207740194418875
LAARPFIAI	9	Unmodified	_LAARPFIAI_					0	0	0			REV__ENST00000448782.5_1_2:178128165-178128255:-|nuORF	REV__ENST00000448782.5_1_2:178128165-178128255:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	486.3041076660156	2	486.30547	970.596387	0.86253	0.00041945	-1.5289	-0.00074351	-0.66637	-0.00032406	486.3047324036629	126.22	3.5173	125.15	124.71	128.23	-1.0715					158	68	5	0	0	0	0.25214	2	9828	9828;9880		68.485	5.1784	1	3175900	+		27439	25342	22468	22496	30727;30728	30727					0.10991244927777188
LAARPFIAI	9	Unmodified	_LAARPFIAI_					0	0	0			REV__ENST00000448782.5_1_2:178128165-178128255:-|nuORF	REV__ENST00000448782.5_1_2:178128165-178128255:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.3050842285156	2	486.30547	970.596387	-1.8727	-0.00091069	1.17	0.00056898	-0.70267	-0.00034171	486.3060163931478	126.56	4.5912	125.14	124.48	129.07	-1.4143					192	91	5	0	0	0	0.6653	1	12161	12161		24.203	3.7209	1	3302400	+		27440	25342	22468	22496	30729	30729					0.10991244927777188
LAARSPVLR	9	Unmodified	_LAARSPVLR_					0	0	0		ENSG00000273604|ENST00000621654|EPOP	ENSG00000273604|ENST00000621654|EPOP	ENSG00000273604|ENST00000621654|EPOP	MULTI-MSMS	OvCa99_classI_Rep5	1	491.8132019042969	2	491.811451	981.608348	-0.85582	-0.0004209	0.72753	0.00035781	-0.12829	-6.3092E-05	491.81162644095303	68.097	0.56016	68.097	67.88	68.44	0					31	13	3	0	0	0	0.38529	1	6404	6404		53.351	2.016	1	2378300			27441	9557	22469	22497	30730	30730					0.11680861670981812
LAASKAPPPAA	11	Unmodified	_LAASKAPPPAA_					0	0	0			REV__ENST00000371084.7_1_1:64059088-64059166:+|nuORF	REV__ENST00000371084.7_1_1:64059088-64059166:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.8373107910156	2	497.290017	992.565481	1.8975	0.00094361	3.5261	0.0017535	5.4237	0.0026971	497.29147893825154	112.86	0.54134	112.86	112.61	113.15	0					25	11	3	0	0	0	0.025377	1	12870	12870		56.721	3.3696	1	369270	+		27442	24975	22470	22498	30731	30731					0.06890046822888962
LAASSAARPL	10	Unmodified	_LAASSAARPL_					0	0	0			REV__ENST00000392894.7_1_3:149530688-149531075:+|nuORF	REV__ENST00000392894.7_1_3:149530688-149531075:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.77618408203125	2	478.779816	955.545079	0.15186	7.2709E-05	-2.3367	-0.0011188	-2.1849	-0.0010461	478.77859349645075	75.028	2.9296	71.797	71.289	74.218	-3.2308					117	60	4	0	0	0	0.15262	1	5870	5870		101.6	11.231	1	7866200	+		27443	25270	22471	22499	30732	30732					0.0655287616308442
LAASSAARPL	10	Unmodified	_LAASSAARPL_					0	0	0			REV__ENST00000392894.7_1_3:149530688-149531075:+|nuORF	REV__ENST00000392894.7_1_3:149530688-149531075:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	478.779816	955.545079	0.19576	9.3726E-05	-0.047964	-2.2964E-05	0.1478	7.0762E-05	478.77957779348566	74.006	1.2323	71.519	71.275	72.507	-2.4873	-0.13932	0.0010744	NaN	101.6	42	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41510	+		27444	25270	22471	22499							0.0655287616308442
LAATDIALN	9	Unmodified	_LAATDIALN_					0	0	0		ENSG00000171944|ENST00000307388|OR52A5	ENSG00000171944|ENST00000307388|OR52A5	ENSG00000171944|ENST00000307388|OR52A5	MULTI-MSMS	OvCa9_classI_Rep4_	4	451.25384521484375	2	451.2531	900.491647	2.0505	0.00092528	-2.0225	-0.00091266	0.027972	1.2622E-05	451.2520290251248	67.799	0.63481	64.308	63.988	64.622	-3.4902					29	12	3	0	0	0	0.16524	1	4996	4996		82.305	2.854	1	734180			27445	7252	22472	22500	30733	30733					0.037420786605594
LAATTWPV	8	Unmodified	_LAATTWPV_					0	0	0			REV__ENST00000361565.8_1_1:201845464-201845701:+|nuORF	REV__ENST00000361565.8_1_1:201845464-201845701:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	429.7376403808594	2	429.739628	857.464704	-0.1352	-5.8101E-05	-4.2732	-0.0018363	-4.4084	-0.0018944	429.73765555310104	40.68	1.2309	37.97	37.7	38.931	-2.7097					50	24	3	0	0	0	0.64377	1	2095	2095		54.765	0	1	378750	+		27446	24856	22473	22501	30734	30734					0.03027014840040465
LAAVKALSL	9	Unmodified	_LAAVKALSL_					0	0	0		ABTB2|p.W379Cfs*31|1|0.16|ENSG00000166016|chr11:34197432-34197432|C/-|frameshift_variant;ENSG00000166016|ENST00000435224|ABTB2	ABTB2|p.W379Cfs*31|1|0.16|ENSG00000166016|chr11:34197432-34197432|C/-|frameshift_variant	ABTB2|p.W379Cfs*31|1|0.16|ENSG00000166016|chr11:34197432-34197432|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	443.2938537597656	2	443.292028	884.569503	0.72332	0.00032064	0.94863	0.00042052	1.6719	0.00074116	443.29227416232646	60.136	1.2744	60.136	59.839	61.113	0					62	30	3	0	0	0	0.46377	1	5220	5220		45.952	0	1	3932900			27447	13	22474	22502	30735	30735					0.12260136316615444
LAAVRFNYETG	11	Unmodified	_LAAVRFNYETG_					0	0	0			REV__ENST00000558807.1_1_15:73547133-73551321:+|nuORF	REV__ENST00000558807.1_1_15:73547133-73551321:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.2142639160156	3	414.215539	1239.62479	0.34694	0.00014371	-3.5205	-0.0014582	-3.1735	-0.0013145	414.2140822138603	38.915	2.2177	35.989	35.651	37.868	-2.9264					117	43	4	0	0	0	0.71191	1	1594	1594		22.562	2.5311	1	957150	+		27448	16829	22475	22503	30736	30736					0.014558980464244087
LAAVSSELFF	10	Unmodified	_LAAVSSELFF_					0	0	0		CTLA4|p.G173E|1|0.22|ENSG00000163599|chr2:203871438-203871438|G/A|missense_variant	CTLA4|p.G173E|1|0.22|ENSG00000163599|chr2:203871438-203871438|G/A|missense_variant	CTLA4|p.G173E|1|0.22|ENSG00000163599|chr2:203871438-203871438|G/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.7736206054688	2	542.289682	1082.56481	-1.6354	-0.00088687	3.3266	0.001804	1.6912	0.00091711	542.7929541163303	42.855	0.78458	39.848	39.383	40.168	-3.0074					22	14	3	0	0	0	0.027048	1	2051	2051		18.324	0	1	66753			27449	692	22476	22504	30737	30737					0.026832073831883463
LAAVTAESPL	10	Unmodified	_LAAVTAESPL_					0	0	0		ENST00000368491.7_2_6:118972582-118972996:-|nuORF	ENST00000368491.7_2_6:118972582-118972996:-|nuORF	ENST00000368491.7_2_6:118972582-118972996:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.3041076660156	2	486.274032	970.533512	0.90368	0.00043943	-4.3048	-0.0020933	-3.4011	-0.0016539	486.27293947930195	126.17	0.41983	125.1	124.97	125.39	-1.0715					9	7	2	0	0	0	0.026462	1	9828	9828		66.429	0	1	13764			27450	10874	22477	22505	30738	30738					0.0470663434908829
LAAWLMFFSQ	10	Unmodified	_LAAWLMFFSQ_					0	0	0		ENST00000583842.1_1_11:118882763-118885798:+|nuORF	ENST00000583842.1_1_11:118882763-118885798:+|nuORF	ENST00000583842.1_1_11:118882763-118885798:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	607.3121948242188	2	607.307352	1212.60015	1.1671	0.00070881	4.4318	0.0026915	5.5989	0.0034003	607.310005002933	89.7	1.9611	87.125	86.559	88.52	-2.575					96	38	3	0	0	0	0.55359	1	7736	7736		47.657	13.485	1	823340			27451	14015	22478	22506	30739	30739					0.002355466393282768
LACARVQAE	9	Unmodified	_LACARVQAE_					0	0	0		ENST00000513886.1_1_16:61684-61825:+|nuORF	ENST00000513886.1_1_16:61684-61825:+|nuORF	ENST00000513886.1_1_16:61684-61825:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	481.28338623046875	2	480.750201	959.48585	-0.69412	-0.0003337	-3.7109	-0.001784	-4.405	-0.0021177	480.75045977086097	58.179	1.8854	55.387	54.922	56.808	-2.7921					42	36	2	0	0	0	0.027462	1	4162	4162		37.159	5.2042	1	11384			27452	13022	22479	22507	30740	30740					0.004486568772449573
LACAVLFVM	9	Unmodified	_LACAVLFVM_					0	0	0			REV__ENSG00000177706|ENST00000313766|FAM20C	REV__ENSG00000177706|ENST00000313766|FAM20C	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.2734069824219	2	483.761192	965.507831	-1.3093	-0.00063337	-2.4863	-0.0012028	-3.7956	-0.0018361	483.75977511940414	48.843	0.7306	45.735	45.451	46.181	-3.1077					22	13	2	0	0	0	0.027462	1	2752	2752		29.842	0	1	61054	+		27453	22023	22480	22508	30741	30741					0.023697453014619896
LACGTRPNAR	10	Unmodified	_LACGTRPNAR_					0	0	0		ENST00000296805.7_1_5:74059587-74062791:-|nuORF;ENST00000506778.1_2_5:74056792-74062791:-|nuORF	ENST00000296805.7_1_5:74059587-74062791:-|nuORF	ENST00000296805.7_1_5:74059587-74062791:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.8184204101562	2	529.779825	1057.5451	-1.6604	-0.00087967	0.57644	0.00030538	-1.084	-0.00057429	529.7799189732325	100.61	1.4871	99.782	99.509	101	-0.83051					46	29	3	0	0	0	0.027028	1	9199	9199		24.519	7.8018	1	159130			27454	10146	22481	22509	30742	30742					0.01862552891429914
LACKDRLK	8	Unmodified	_LACKDRLK_					0	0	0		ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	MULTI-MSMS	OvCa99_classI_Rep5	1	473.7792053222656	2	473.778762	945.542971	-0.48297	-0.00022882	-1.6937	-0.00080246	-2.1767	-0.0010313	473.7777418362187	49.424	0.8705	49.424	48.986	49.856	0					30	19	3	0	0	0	0.58851	1	3692	3692		66.429	10.925	1	681530			27455	6173	22482	22510	30743	30743					0.06802124153625755
LACRPHAPM	9	Unmodified	_LACRPHAPM_					0	0	0			REV__ENST00000336967.7_1_19:54378000-54378504:+|nuORF	REV__ENST00000336967.7_1_19:54378000-54378504:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.2814636230469	2	498.249314	994.484076	0.036365	1.8119E-05	3.7997	0.0018932	3.8361	0.0019113	498.2507770397294	58.209	0.46132	58.209	58.027	58.488	0					15	10	2	0	0	0	0.027462	1	4927	4927		26.796	14.589	1	226980	+		27456	24592	22483	22511	30744	30744					-0.013386754123530409
LACSLCPQDH	10	Unmodified	_LACSLCPQDH_					0	0	0		nc|ENSG00000173567|Q8IZF5-2|ADGRF3;nc|ENSG00000173567|Q8IZF5-3|ADGRF3;ENSG00000173567|ENST00000651242|ADGRF3;nc|ENSG00000173567|Q8IZF5|ADGRF3;ENST00000459892.5_1_2:26531956-26538428:-|nuORF	nc|ENSG00000173567|Q8IZF5-2|ADGRF3	nc|ENSG00000173567|Q8IZF5-2|ADGRF3	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.324462890625	2	543.738976	1085.4634	2.529	0.0013751	-0.92405	-0.00050244	1.6049	0.00087267	544.2399552804693	75.584	0.28195	75.584	75.482	75.764	0					11	6	2	0	0	0	0.026688	1	7536	7536		40.778	0	1	203440			27457	7389	22484	22512	30745	30745					-0.07591310582665756
LACVARLII	9	Unmodified	_LACVARLII_					0	0	0			REV__nc|ENSG00000166750|Q08AF3-2|SLFN5	REV__nc|ENSG00000166750|Q08AF3-2|SLFN5	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.304931640625	2	486.307155	970.599758	-1.8727	-0.00091069	-2.2957	-0.0011164	-4.1684	-0.0020271	486.3060163931478	126.56	4.5912	125.14	124.48	129.07	-1.4143					192	91	5	0	0	0	0.42057	1	12030	12030		50.025	2.1089	1	3302400	+		27458	21217	22485	22513	30746	30746					0.11328171710158585
LADDSVRSL	9	Unmodified	_LADDSVRSL_					0	0	0		ENSG00000138078|ENST00000409411|PREPL;nc|ENSG00000138078|Q4J6C6-2|PREPL;nc|ENSG00000138078|Q4J6C6|PREPL	ENSG00000138078|ENST00000409411|PREPL	ENSG00000138078|ENST00000409411|PREPL	MULTI-MSMS	OvCa99_classI_Rep5	1	488.26092529296875	2	488.258914	974.503274	0.65626	0.00032042	-0.49409	-0.00024124	0.16217	7.9182E-05	488.25858064785047	67.063	0.82533	67.063	66.779	67.604	0					35	20	3	0	0	0	0.07097	1	6253	6253		106.68	18.987	1	2568200			27459	4654	22486	22514	30747	30747					0.01500275683918062
LADEKGRCI	9	Unmodified	_LADEKGRCI_					0	0	0			REV__ENST00000599159.1_1_19:40329665-40336940:-|nuORF	REV__ENST00000599159.1_1_19:40329665-40336940:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	502.7628173828125	2	502.763309	1003.51206	1.2962	0.00065166	-1.3666	-0.00068706	-0.070404	-3.5396E-05	502.76247959947113	61.457	2.958	58.389	57.803	60.761	-3.0685					131	69	3	0	0	0	0.51865	1	2127	2127		40.778	3.7497	1	112640	+		27460	17703	22487	22515	30748	30748					0.010449260487234824
LADELVKHTKI	11	Unmodified	_LADELVKHTKI_					0	0	0			REV__tr|A0A7D7A0Q9|A0A7D7A0Q9_9CLOTGlutamatesynthaselargesubunitOS=ClostridiumintestinaleOX=36845GN=gltBPE=3SV=1	REV__tr|A0A7D7A0Q9|A0A7D7A0Q9_9CLOTGlutamatesynthaselargesubunitOS=ClostridiumintestinaleOX=36845GN=gltBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	422.9192199707031	3	422.918722	1265.73434	-0.42407	-0.00017935	1.0922	0.0004619	0.6681	0.00028255	422.9191804294928	74.511	2.5984	72.54	72.114	74.713	-1.9711					157	49	5	0	0	0	0.57194	1	6126	6126		47.228	0.7709	1	1026300	+		27461	32453	22488	22516	30749	30749					0.1120990366573551
LADELVKHTKI	11	Unmodified	_LADELVKHTKI_					0	0	0			REV__tr|A0A7D7A0Q9|A0A7D7A0Q9_9CLOTGlutamatesynthaselargesubunitOS=ClostridiumintestinaleOX=36845GN=gltBPE=3SV=1	REV__tr|A0A7D7A0Q9|A0A7D7A0Q9_9CLOTGlutamatesynthaselargesubunitOS=ClostridiumintestinaleOX=36845GN=gltBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	422.9197998046875	3	422.918722	1265.73434	-0.036263	-1.5336E-05	0.8095	0.00034235	0.77324	0.00032702	422.9190110204645	75.916	2.7671	73.545	72.861	75.628	-2.3715					169	53	5	0	0	0	0.62561	1	3854	3854		42.338	3.624	1	908720	+		27462	32453	22488	22516	30750	30750					0.1120990366573551
LADGLYTI	8	Unmodified	_LADGLYTI_					0	0	0		tr|A0A553SFC3|A0A553SFC3_NIACISortaseBprotein-sortingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_08635PE=4SV=1	tr|A0A553SFC3|A0A553SFC3_NIACISortaseBprotein-sortingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_08635PE=4SV=1	tr|A0A553SFC3|A0A553SFC3_NIACISortaseBprotein-sortingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_08635PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	432.91680908203125	2	433.236919	864.459284	0.081082	3.5128E-05	1.0078	0.00043662	1.0889	0.00047175	433.237619289313	55.867	0.30674	52.573	52.311	52.617	-3.2944					7	5	2	0	0	0	0.028476	1	3537	3537		26.796	0	1	4512.8			27463	33023	22489	22517	30751	30751					0.02163291257579658
LADGVQKV	8	Unmodified	_LADGVQKV_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OvCa99_classI_Rep5	1	415.24365234375	2	415.242535	828.470518	0.29802	0.00012375	0.10611	4.406E-05	0.40412	0.00016781	415.2424510432496	58.941	0.41851	58.941	58.774	59.192	0					27	10	3	0	0	0	0.064388	1	5039	5039		152.47	27.876	1	4331200			27464	2048	22490	22518	30752	30752					0.04942113351705757
LADKVRPRNI	10	Unmodified	_LADKVRPRNI_					0	0	0		tr|A0A7D6VSI2|A0A7D6VSI2_9CLOTReplication-associatedrecombinationproteinAOS=ClostridiumintestinaleOX=36845GN=HZF06_09380PE=3SV=1	tr|A0A7D6VSI2|A0A7D6VSI2_9CLOTReplication-associatedrecombinationproteinAOS=ClostridiumintestinaleOX=36845GN=HZF06_09380PE=3SV=1	tr|A0A7D6VSI2|A0A7D6VSI2_9CLOTReplication-associatedrecombinationproteinAOS=ClostridiumintestinaleOX=36845GN=HZF06_09380PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	591.3599243164062	2	591.359296	1180.70404	1.5777	0.00093301	0.16315	9.6481E-05	1.7409	0.0010295	591.3589665224553	130.36	0.66719	130.36	130.06	130.72	0					27	13	3	0	0	0	0.70152	1	15130	15130		30.318	2.2362	1	273550			27465	35027	22491	22519	30753	30753					0.12091589791248225
LADKVRPRNI	10	Unmodified	_LADKVRPRNI_					0	0	0		tr|A0A7D6VSI2|A0A7D6VSI2_9CLOTReplication-associatedrecombinationproteinAOS=ClostridiumintestinaleOX=36845GN=HZF06_09380PE=3SV=1	tr|A0A7D6VSI2|A0A7D6VSI2_9CLOTReplication-associatedrecombinationproteinAOS=ClostridiumintestinaleOX=36845GN=HZF06_09380PE=3SV=1	tr|A0A7D6VSI2|A0A7D6VSI2_9CLOTReplication-associatedrecombinationproteinAOS=ClostridiumintestinaleOX=36845GN=HZF06_09380PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	591.3623046875	2	591.359296	1180.70404	-0.18923	-0.0001119	-2.5774	-0.0015242	-2.7666	-0.0016361	591.3562587131781	130	2.1652	128.88	128.64	130.8	-1.1121					72	43	3	0	0	0	0.69073	1	10291	10291		31.53	1.2121	1	89398			27466	35027	22491	22519	30754	30754					0.12091589791248225
LADLLKTVN	9	Unmodified	_LADLLKTVN_					0	0	0			REV__ENSG00000099999|ENST00000382363|RNF215	REV__ENSG00000099999|ENST00000382363|RNF215	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.30438232421875	2	493.797675	985.580796	-0.08797	-4.3439E-05	-0.20419	-0.00010083	-0.29216	-0.00014427	493.79738471172664	98.675	1.3933	97.782	97.508	98.901	-0.89305					54	27	4	0	0	0	0.027462	1	9025	9025		44.117	1.7207	1	347850	+		27467	17352	22492	22520	30755	30755					0.08742913620085346
LADLVTTKP	9	Unmodified	_LADLVTTKP_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.P9131Lfs*70|1|0.1|ENSG00000181143|chr19:8949378-8949379|-/CATCCTTCCACAA|frameshift_variant;MUC16|p.F9515*|1|0.24|ENSG00000181143|chr19:8948225-8948226|AA/-|frameshift_variant;MUC16|p.T9803Vfs*24|1|0.05|ENSG00000181143|chr19:8947363-8947364|-/GGAC|frameshift_variant;MUC16|p.D9802Vfs*25|1|0.05|ENSG00000181143|chr19:8947365-8947366|-/ATCAACAACACCCAACTGGGTAGAAA|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.301513671875	2	479.2844	956.554247	0.14301	6.8543E-05	-0.67378	-0.00032293	-0.53077	-0.00025439	479.28388993219005	58.381	0.62226	58.381	58.112	58.734	0					32	14	3	0	0	0	0.027017	1	5004	5004		93.195	5.4412	1	1657700			27468	7920	22493	22521	30756	30756					0.07423224728745481
LADMRTGVE	9	Unmodified	_LADMRTGVE_					0	0	0		ENSG00000134253|ENST00000256649|TRIM45;nc|ENSG00000134253|Q9H8W5-2|TRIM45	ENSG00000134253|ENST00000256649|TRIM45	ENSG00000134253|ENST00000256649|TRIM45	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.2552185058594	2	496.247492	990.48043	-1.2109	-0.0006009	2.2161	0.0010997	1.0052	0.00049884	496.2483902141358	43.675	0.72269	43.675	43.143	43.866	0					37	16	4	0	0	0	0.027462	1	2920	2920		10.866	0	1	2043900			27469	4271	22494	22522	30757	30757					-0.015190667052138451
LADPDKRK	8	Unmodified	_LADPDKRK_					0	0	0			REV__ITGAL|p.Q447Rfs*31|1|0.29|ENSG00000005844|chr16:30494336-30494342|CCAGGTC/-|frameshift_variant	REV__ITGAL|p.Q447Rfs*31|1|0.29|ENSG00000005844|chr16:30494336-30494342|CCAGGTC/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	471.7708740234375	2	471.771991	941.529429	-0.3694	-0.00017427	0.43984	0.00020751	0.070441	3.3232E-05	471.772087375345	64.335	1.9301	61.61	60.862	62.792	-2.7246					82	36	3	0	0	0	0.60486	1	4902	4902		62.978	2.6845	1	448050	+		27470	16404	22495	22523	30758	30758					0.05632589646040742
LADPENRQL	9	Unmodified	_LADPENRQL_					0	0	0		ENST00000519177.5_1_8:121583594-121823792:-|nuORF;nc|ENSG00000172164|Q13884-2|SNTB1;ENSG00000172164|ENST00000517992|SNTB1	ENST00000519177.5_1_8:121583594-121823792:-|nuORF	ENST00000519177.5_1_8:121583594-121823792:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	528.278564453125	2	528.277638	1054.54072	0.10509	5.5515E-05	-0.59545	-0.00031456	-0.49036	-0.00025905	528.2772252969182	57.844	1.2157	57.844	57.48	58.696	0					69	28	5	0	0	0	0.1243	2	4872	4872;4900		90.601	23.107	1	7459200			27471	7270	22496	22524	30759;30760	30759					0.015633669495173308
LADPLPIS	8	Unmodified	_LADPLPIS_					0	0	0		ENST00000377028.9_1_13:95091181-95091223:-|nuORF	ENST00000377028.9_1_13:95091181-95091223:-|nuORF	ENST00000377028.9_1_13:95091181-95091223:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	413.2402038574219	2	413.239461	824.46437	0.32223	0.00013316	-1.8868	-0.00077972	-1.5646	-0.00064656	413.2391158329503	53.666	1.0322	53.666	53.432	54.464	0					27	24	2	0	0	0	0.59103	1	4298	4298		65.897	0	1	1040500			27472	11083	22497	22525	30761	30761					0.04511595120197853
LADPSAKAV	9	Unmodified	_LADPSAKAV_					0	0	0		ENSG00000107854|ENST00000371627|TNKS2;ENSG00000173273|ENST00000310430|TNKS;nc|ENSG00000173273|O95271-2|TNKS;TNKS-KHDRBS3|1|fusion	ENSG00000107854|ENST00000371627|TNKS2	ENSG00000107854|ENST00000371627|TNKS2	MULTI-MSMS	OvCa99_classI_Rep5	1	436.2490234375	2	436.247818	870.481082	0.44557	0.00019438	-0.24406	-0.00010647	0.20151	8.7908E-05	436.24760929436394	50.959	1.1893	50.959	50.64	51.829	0					61	27	4	0	0	0	0.2077	1	3888	3888		75.043	0.78827	1	4993700			27473	2619	22498	22526	30762	30762					0.04066096006135922
LADQKNYF	8	Unmodified	_LADQKNYF_					0	0	0			REV__CHD1|p.E778D|1|0.22|ENSG00000153922|chr5:98889085-98889085|C/G|missense_variant	REV__CHD1|p.E778D|1|0.22|ENSG00000153922|chr5:98889085-98889085|C/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.30615234375	2	499.750724	997.486896	2.5821	0.0012904	3.1978	0.0015981	5.7798	0.0028885	499.75243990489247	96.509	0.41698	96.509	96.126	96.543	0					16	9	2	0	0	0	0.028476	1	10540	10540		45.952	5.3793	1	413520	+		27474	15787	22499	22527	30763	30763					-0.011948054821914411
LADSKQLLF	9	Unmodified	_LADSKQLLF_					0	0	0			REV__tr|A0A553SLA9|A0A553SLA9_NIACIUPF0398proteinCEQ21_20285OS=NialliacirculansOX=1397GN=CEQ21_20285PE=3SV=1	REV__tr|A0A553SLA9|A0A553SLA9_NIACIUPF0398proteinCEQ21_20285OS=NialliacirculansOX=1397GN=CEQ21_20285PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	518.2975463867188	2	517.797675	1033.5808	1.6447	0.00085161	-0.37683	-0.00019512	1.2679	0.00065649	517.7976629712007	117.67	0.97816	117.67	117.27	118.25	0					49	20	4	0	0	0	0.48047	1	13504	13504		44.377	7.9304	1	650450	+		27475	30207	22500	22528	30764	30764					0.06534913620089355
LADTVKQW	8	Unmodified	_LADTVKQW_					0	0	0		tr|A0A553SG59|A0A553SG59_NIACITIGR01777familyproteinOS=NialliacirculansOX=1397GN=CEQ21_10240PE=3SV=1	tr|A0A553SG59|A0A553SG59_NIACITIGR01777familyproteinOS=NialliacirculansOX=1397GN=CEQ21_10240PE=3SV=1	tr|A0A553SG59|A0A553SG59_NIACITIGR01777familyproteinOS=NialliacirculansOX=1397GN=CEQ21_10240PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.75115966796875	2	480.761092	959.507631	-2.1081	-0.0010135	3.4877	0.0016767	1.3795	0.00066323	480.7626131524557	49.372	0.30938	46.231	46.043	46.352	-3.1416					7	5	2	0	0	0	0.028476	1	2779	2779		42.474	10.52	1	47360			27476	33122	22501	22529	30765	30765					0.026257848974637454
LADVKVHIL	9	Unmodified	_LADVKVHIL_					0	0	0		ENSG00000115946|ENST00000263657|PNO1	ENSG00000115946|ENST00000263657|PNO1	ENSG00000115946|ENST00000263657|PNO1	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.3536682128906	2	504.316035	1006.61752	2.0391	0.0010283	-0.19266	-9.7163E-05	1.8464	0.00093117	504.3158455450057	136.85	0.71921	136.85	136.49	137.21	0					28	14	3	0	0	0	0.027448	1	15953	15953		53.351	3.9099	1	146940			27477	3140	22502	22530	30766	30766					0.11447210236656247
LADYGAEPNA	10	Unmodified	_LADYGAEPNA_					0	0	0			REV__tr|A0A7D6ZK86|A0A7D6ZK86_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11595PE=4SV=1	REV__tr|A0A7D6ZK86|A0A7D6ZK86_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11595PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.7783508300781	2	510.735271	1019.45599	-1.4425	-0.00073672	1.7158	0.00087629	0.27329	0.00013958	510.7355157638219	72.608	0.77847	69.212	68.765	69.543	-3.3961					24	15	2	0	0	0	0.026493	1	5626	5626		54.776	5.3348	1	42410	+		27478	32102	22503	22531	30767	30767					-0.05296003587102405
LAEADHVQ	8	Unmodified	_LAEADHVQ_					0	0	0			REV__nc|ENSG00000140853|Q86WI3-5|NLRC5	REV__nc|ENSG00000140853|Q86WI3-5|NLRC5	MULTI-SECPEP	OvCa99_classI_Rep5	1	441.7625427246094	2	441.719424	881.424296	0.93375	0.00041245	-0.77785	-0.00034359	0.1559	6.8863E-05	441.71891998775413	58.71	0.40439	58.71	58.488	58.892	0					19	9	3	0	0	0	0.028476	1	5033	5033		53.351	3.3269	1	661180	+		27479	19703	22504	22532	30768	30768					-0.021159515503882176
LAEAELLKL	9	Unmodified	_LAEAELLKL_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	OvCa99_classI_Rep5	1	500.30902099609375	2	500.307875	998.601197	0.45654	0.00022841	-0.95662	-0.0004786	-0.50007	-0.00025019	500.3072384549448	160.94	0.95584	160.94	160.61	161.56	0					45	18	4	0	0	0	0.21231	1	18876	18876		74.255	0	1	594550			27480	8118	22505	22533	30769	30769					0.10184084279887884
LAEAGGRAL	9	Unmodified	_LAEAGGRAL_					0	0	0		SPG7|p.L543Hfs*33|1|0.32|ENSG00000197912|chr16:89548077-89548078|-/A|frameshift_variant;ENSG00000197912|ENST00000645818|SPG7;nc|ENSG00000197912|Q9UQ90-2|SPG7	SPG7|p.L543Hfs*33|1|0.32|ENSG00000197912|chr16:89548077-89548078|-/A|frameshift_variant	SPG7|p.L543Hfs*33|1|0.32|ENSG00000197912|chr16:89548077-89548078|-/A|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	429.2461853027344	2	429.245609	856.476666	-0.15263	-6.5515E-05	0.21076	9.0468E-05	0.058131	2.4952E-05	429.24553536353403	50.906	0.99097	50.906	50.594	51.585	0					41	22	4	0	0	0	0.12515	1	3895	3895		90.37	8.1293	1	899110			27481	8762	22506	22534	30770	30770					0.04268631583215665
LAEATWGLL	9	Unmodified	_LAEATWGLL_					0	0	0			REV__ZNF589-CLIP4|1|fusion	REV__ZNF589-CLIP4|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.2678527832031	2	487.271293	972.528032	-2.2926	-0.0011171	-2.2864	-0.0011141	-4.579	-0.0022312	487.27017643386034	126.26	0.83515	124.84	124.63	125.46	-1.4143					24	16	2	0	0	0	0.61208	1	12015	12015		30.504	2.2494	1	28714	+		27482	20926	22507	22535	30771	30771					0.04066955557277652
LAECIQHGG	9	Unmodified	_LAECIQHGG_					0	0	0		ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.2792663574219	2	464.221277	926.428001	-0.37852	-0.00017572	1.1714	0.0005438	0.7929	0.00036808	464.2217301587268	86.416	1.4857	84.926	84.146	85.632	-1.4906					57	28	3	0	0	0	0.027462	1	7523	7523		38.806	10.552	1	76419			27483	1176	22508	22536	30772	30772					-0.03815605048157522
LAECIQHGG	9	Unmodified	_LAECIQHGG_					0	0	0		ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	464.221277	926.428001	2.094	0.00097207	0.95895	0.00044517	3.0529	0.0014172	464.2216396508261	85.107	0.49789	85.107	84.882	85.38	0	0.090412	-0.00012352	NaN	38.806	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	824640			27484	1176	22508	22536							-0.03815605048157522
LAEEASQEP	9	Unmodified	_LAEEASQEP_					0	0	0		APBB1|p.I367Sfs*9|1|0.05|ENSG00000166313|chr11:6403151-6403151|C/-|frameshift_variant;nc|ENSG00000166313|O00213-2|APBB1;ENSG00000166313|ENST00000609360|APBB1	APBB1|p.I367Sfs*9|1|0.05|ENSG00000166313|chr11:6403151-6403151|C/-|frameshift_variant	APBB1|p.I367Sfs*9|1|0.05|ENSG00000166313|chr11:6403151-6403151|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	487.2823486328125	2	487.227279	972.440005	-1.0307	-0.00050218	-0.9572	-0.00046638	-1.9879	-0.00096856	487.2283540941094	95.196	0.25118	93.301	93.111	93.362	-1.8956					6	4	2	0	0	0	0.027462	1	6184	6184		15.642	0	1	12413			27485	100	22509	22537	30773	30773					-0.047317098239886946
LAEELKAQ	8	Unmodified	_LAEELKAQ_					0	0	0			REV__ENSG00000150764|ENST00000440460|DIXDC1	REV__ENSG00000150764|ENST00000440460|DIXDC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.79742431640625	2	451.2531	900.491647	-0.36771	-0.00016593	1.2578	0.00056759	0.8901	0.00040166	451.25367376214746	45.088	1.1438	42.049	41.714	42.858	-3.0385					32	21	2	0	0	0	0.028476	1	2372	2372		47.916	9.1095	1	197580	+		27486	20203	22510	22538	30774	30774					0.03742078660570769
LAEELQAQ	8	Unmodified	_LAEELQAQ_					0	0	0		nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;ENST00000382162.7_1_22:32002284-32014401:+|nuORF;nc|ENSG00000198089|A8K8P3-5|SFI1;ENST00000464333.5_1_22:32012607-32014401:+|nuORF	nc|ENSG00000198089|A8K8P3-10|SFI1;ENST00000464333.5_1_22:32012607-32014401:+|nuORF	nc|ENSG00000198089|A8K8P3-10|SFI1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.79742431640625	2	451.234907	900.455261	-0.22067	-9.9574E-05	0.66931	0.00030202	0.44864	0.00020244	451.23513864397194	45.781	1.0954	42.742	42.491	43.586	-3.0385					35	20	3	0	0	0	0.028476	1	2372	2372		47.916	0	1	169400			27487	8783;12249	22511	22539	30775	30775					0.001052017638585312
LAEERAQLL	9	Unmodified	_LAEERAQLL_					0	0	0		ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.8209228515625	2	521.798206	1041.58186	-1.1575	-0.00060399	-0.27585	-0.00014394	-1.4334	-0.00074793	521.7980317355155	104.59	0.8956	104.59	104.19	105.09	0					39	20	3	0	0	0	0.027137	1	11779	11779		101.6	0	1	1667600			27488	9125	22512	22540	30776	30776					0.06273127989015848
LAEGLSLVV	9	Unmodified	_LAEGLSLVV_					0	0	0		ENSG00000170876|ENST00000306077|TMEM43	ENSG00000170876|ENST00000306077|TMEM43	ENSG00000170876|ENST00000306077|TMEM43	MULTI-MSMS	OvCa99_classI_Rep5	1	450.7745666503906	2	450.773668	899.532783	1.9774	0.00089136	0.019555	8.8148E-06	1.997	0.00090018	450.77358642576394	129.95	0.71292	129.95	129.72	130.44	0					22	14	2	0	0	0	0.14739	1	15071	15071		85.359	3.0545	1	138090			27489	7146	22513	22541	30777	30777					0.07899839700041866
LAEGTGSQLVQ	11	Unmodified	_LAEGTGSQLVQ_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	OvCa99_classI_Rep5	1	551.7923583984375	2	551.790578	1101.5666	2.1768	0.0012011	1.046	0.00057716	3.2227	0.0017783	551.7909384074394	101.12	0.7544	101.12	100.81	101.57	0					36	17	3	0	0	0	0.15616	1	11225	11225		85.862	3.5568	1	3379800	+		27490	20615	22514	22542	30778	30778					0.01988216401127829
LAEGTGSQLVQ	11	Unmodified	_LAEGTGSQLVQ_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	551.790578	1101.5666	2.1768	0.0012011	1.046	0.00057716	3.2227	0.0017783	551.7909384074394	101.12	0.7544	101.12	100.81	101.57	0	0	0	NaN	85.862	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3379800	+		27491	20615	22514	22542							0.01988216401127829
LAEHNVAS	8	Unmodified	_LAEHNVAS_					0	0	0		ENST00000397881.7_2_19:10197589-10201972:+|nuORF	ENST00000397881.7_2_19:10197589-10201972:+|nuORF	ENST00000397881.7_2_19:10197589-10201972:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	420.7132873535156	2	420.714142	839.413731	2.8396	0.0011947	-3.2064	-0.001349	-0.3668	-0.00015432	420.7126976357209	75.66	0.9938	75.66	75.33	76.324	0					42	24	2	0	0	0	0.74229	1	7532	7532		30.504	5.0535	1	601210			27492	11357	22515	22543	30779	30779					-0.012399342048070139
LAEHQTTHP	9	Unmodified	_LAEHQTTHP_					0	0	0		ENSG00000180884|ENST00000404801|ZNF792	ENSG00000180884|ENST00000404801|ZNF792	ENSG00000180884|ENST00000404801|ZNF792	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2794189453125	2	517.256705	1032.49886	1.9249	0.00099567	-3.8933	-0.0020138	-1.9684	-0.0010181	517.2545421290483	86.91	1.0355	86.91	86.511	87.546	0					34	24	2	0	0	0	0.027462	1	9227	9227		24.203	0	1	1718600			27493	7895	22516	22544	30780	30780					-0.0160918873900755
LAEKEQEY	8	Unmodified	_LAEKEQEY_					0	0	0			REV__ENST00000521308.5_1_5:150563000-150603580:-|nuORF	REV__ENST00000521308.5_1_5:150563000-150603580:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	505.2450256347656	2	505.245472	1008.47639	1.1737	0.00059298	-4.428	-0.0022372	-3.2543	-0.0016442	505.24316907629907	61.932	0.69547	58.863	58.583	59.278	-3.0685					29	18	2	0	0	0	0.75723	1	2188	2188		23.042	2.0956	1	18185	+		27494	23036	22517	22545	30781	30781					-0.027508329272791343
LAEKEQEY	8	Unmodified	_LAEKEQEY_					0	0	0			REV__ENST00000521308.5_1_5:150563000-150603580:-|nuORF	REV__ENST00000521308.5_1_5:150563000-150603580:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	505.245472	1008.47639	1.1737	0.00059298	-4.428	-0.0022372	-3.2543	-0.0016442	505.24316907629907	61.932	0.69547	58.863	58.583	59.278	-3.0685	-0.068655	-0.00043705	NaN	23.042	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18185	+		27495	23036	22517	22545							-0.027508329272791343
LAEKEQEY	8	Unmodified	_LAEKEQEY_					0	0	0			REV__ENST00000521308.5_1_5:150563000-150603580:-|nuORF	REV__ENST00000521308.5_1_5:150563000-150603580:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	505.245472	1008.47639	-0.60936	-0.00030788	-3.3029	-0.0016688	-3.9123	-0.0019767	505.24368963988724	62.458	0.73476	59	58.715	59.45	-3.4577	0.068655	0.00069985	NaN	23.042	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92796	+		27496	23036	22517	22545							-0.027508329272791343
LAELLYII	8	Unmodified	_LAELLYII_					0	0	0		ENST00000484926.1_1_2:202050494-202050848:+|nuORF;nc|ENSG00000003400|Q92851-7|CASP10;nc|ENSG00000003400|Q92851-3|CASP10;ENST00000460140.5_1_2:202050494-202070750:+|nuORF;nc|ENSG00000003400|Q92851-6|CASP10;nc|ENSG00000003400|Q92851-5|CASP10;nc|ENSG00000003400|Q92851-2|CASP10;nc|ENSG00000003400|Q92851|CASP10;ENSG00000003400|ENST00000286186|CASP10	ENST00000484926.1_1_2:202050494-202050848:+|nuORF	ENST00000484926.1_1_2:202050494-202050848:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.7555236816406	2	474.294236	946.57392	0.12046	5.7133E-05	-3.2335	-0.0015336	-3.1131	-0.0014765	474.29256693966965	70.607	0.5854	70.607	70.369	70.954	0					25	14	3	0	0	0	0.028476	1	6764	6764		42.474	0	1	758400			27497	819	22518	22546	30782	30782					0.09849600739516973
LAELRAGIEF	10	Unmodified	_LAELRAGIEF_					0	0	0			REV__ENST00000522580.5_1_8:133790074-133801062:+|nuORF	REV__ENST00000522580.5_1_8:133790074-133801062:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	559.8175048828125	2	559.813856	1117.61316	2.0742	0.0011611	3.1356	0.0017553	5.2097	0.0029165	559.8156915922438	133.1	8.2265	133.1	132.6	140.83	0					464	175	6	0	0	0	0.52439	1	15578	15578		51.193	1.9819	1	47573000	+		27498	18892	22519	22547	30783	30783					0.05905701023084475
LAENRILF	8	Unmodified	_LAENRILF_					0	0	0		ENST00000318037.3_1_3:196230069-196230132:-|nuORF	ENST00000318037.3_1_3:196230069-196230132:-|nuORF	ENST00000318037.3_1_3:196230069-196230132:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	488.2835388183594	2	488.284734	974.554916	-0.60534	-0.00029558	-0.41478	-0.00020253	-1.0201	-0.00049811	488.2844519822403	100.12	1.1905	99.289	98.964	100.15	-0.83051					71	23	4	0	0	0	0.64026	1	9144	9144		55.504	0	1	404010			27499	10361	22520	22548	30784	30784					0.0666206416847217
LAERCEQR	8	Unmodified	_LAERCEQR_					0	0	0		nc|ENSG00000154529|Q96NU0-2|CNTNAP3B;ENSG00000154529|ENST00000377561|CNTNAP3B;nc|ENSG00000283378|Q9BZ76-2|CNTNAP3;ENSG00000106714|ENST00000297668|CNTNAP3;ENST00000448573.2_1_9:39118101-39140549:-|nuORF	nc|ENSG00000154529|Q96NU0-2|CNTNAP3B	nc|ENSG00000154529|Q96NU0-2|CNTNAP3B	MULTI-SECPEP	OvCa9_classI_Rep3	3	502.7803039550781	2	502.750733	1003.48691	-0.9622	-0.00048375	1.4434	0.00072568	0.48122	0.00024193	502.7517426806151	88.1	0.36023	85.969	85.752	86.112	-2.1309					9	6	2	0	0	0	0.028476	1	5323	5323		42.474	11.971	1	7900.1			27500	5744	22521	22549	30785	30785					-0.014691287538425968
LAEREEATL	9	Unmodified	_LAEREEATL_					0	0	0			REV__KDM6A|p.F953Sfs*25|1|0.5|ENSG00000147050|chrX:45078424-45078425|TT/-|frameshift_variant;REV__nc|ENSG00000147050|O15550|KDM6A	REV__nc|ENSG00000147050|O15550|KDM6A	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.27197265625	2	516.272021	1030.52949	-0.89294	-0.000461	-1.1264	-0.00058155	-2.0194	-0.0010426	516.2711421933835	82.279	1.3083	79.596	79.109	80.417	-2.683					92	26	5	0	0	0	0.31747	1	6808	6808		60.972	4.5381	1	796880	+		27501	28331;20039	22522	22550	30786	30786					0.01544544855391905
LAERHLGP	8	Unmodified	_LAERHLGP_					0	0	0			REV__ENST00000458578.6_1_22:21976624-21976675:+|nuORF	REV__ENST00000458578.6_1_22:21976624-21976675:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	445.7781677246094	2	446.753601	891.49265	3.2239	0.0014403	2.7333	0.0012211	5.9572	0.0026614	446.75505411408983	98.923	0.40044	98.923	98.596	98.996	0					13	9	2	0	0	0	0.028476	1	10922	10922		20.482	0	1	225860	+		27502	26058	22523	22551	30787	30787					0.04256337820140743
LAERVKLAI	9	Unmodified	_LAERVKLAI_					0	0	0			REV__tr|A0A553SKQ7|A0A553SKQ7_NIACIDNAprimaseOS=NialliacirculansOX=1397GN=dnaGPE=3SV=1	REV__tr|A0A553SKQ7|A0A553SKQ7_NIACIDNAprimaseOS=NialliacirculansOX=1397GN=dnaGPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.8096923828125	2	506.829309	1011.64407	1.3877	0.00070332	-4.1008	-0.0020784	-2.7132	-0.0013751	506.8271451313241	88.444	0.24636	87.076	86.888	87.135	-1.3676					6	4	2	0	0	0	0.027343	1	7743	7743		79.451	13.022	1	18302	+		27503	30145	22524	22552	30788	30788					0.1387089912798274
LAESFERI	8	Unmodified	_LAESFERI_					0	0	0		tr|A0A553SMY7|A0A553SMY7_NIACIAconitatehydrataseOS=NialliacirculansOX=1397GN=acnAPE=3SV=1	tr|A0A553SMY7|A0A553SMY7_NIACIAconitatehydrataseOS=NialliacirculansOX=1397GN=acnAPE=3SV=1	tr|A0A553SMY7|A0A553SMY7_NIACIAconitatehydrataseOS=NialliacirculansOX=1397GN=acnAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	482.7604064941406	2	482.758549	963.502546	2.1392	0.0010327	1.1547	0.00055742	3.2938	0.0015901	482.7588804234167	57.803	3.1186	54.676	53.456	56.575	-3.1264					158	85	3	0	0	0	0.72896	1	1797	1797		37.159	0	1	89902			27504	33886	22525	22553	30789	30789					0.019334810348709652
LAEVDRGDV	9	Unmodified	_LAEVDRGDV_					0	0	0			REV__nc|ENSG00000007350|P51854-4|TKTL1	REV__nc|ENSG00000007350|P51854-4|TKTL1	MULTI-MSMS	OvCa99_classI_Rep5	1	487.251220703125	2	487.251089	972.487624	1.1075	0.00053963	-1.4269	-0.00069527	-0.31943	-0.00015564	487.2502605241177	102.03	0.98427	102.03	101.69	102.68	0					50	22	3	0	0	0	0.18193	1	11357	11357		79.451	2.6044	1	6443200	+		27505	16434	22526	22554	30790	30790					0.0002798916685833319
LAEVGRALAL	10	Unmodified	_LAEVGRALAL_					0	0	0			REV__ENST00000514507.1_1_5:663600-666098:+|nuORF	REV__ENST00000514507.1_1_5:663600-666098:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	506.8096923828125	2	506.811116	1011.60768	1.4081	0.00071364	-2.4174	-0.0012251	-1.0093	-0.00051151	506.809990859047	88.555	2.3705	87.187	86.69	89.061	-1.3676					168	47	5	0	0	0	0.22663	2	7743	7743;7749		90.37	16.115	1	5233500	+		27506	26987	22527	22555	30791;30792	30791					0.10234022231270501
LAEVGRALAL	10	Unmodified	_LAEVGRALAL_					0	0	0			REV__ENST00000514507.1_1_5:663600-666098:+|nuORF	REV__ENST00000514507.1_1_5:663600-666098:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.8115234375	2	506.811116	1011.60768	0.31561	0.00015995	-1.485	-0.00075259	-1.1694	-0.00059264	506.81045586251577	89.749	2.4253	87.174	86.704	89.129	-2.575					167	47	5	0	0	0	0.35465	1	7728	7728		74.255	0.28031	1	8441000	+		27507	26987	22527	22555	30793	30793					0.10234022231270501
LAFAYGIVLI	10	Unmodified	_LAFAYGIVLI_					0	0	0		tr|A0A7D6VVM5|A0A7D6VVM5_9CLOTProbablemultidrugresistanceproteinNorMOS=ClostridiumintestinaleOX=36845GN=HZF06_05535PE=4SV=1	tr|A0A7D6VVM5|A0A7D6VVM5_9CLOTProbablemultidrugresistanceproteinNorMOS=ClostridiumintestinaleOX=36845GN=HZF06_05535PE=4SV=1	tr|A0A7D6VVM5|A0A7D6VVM5_9CLOTProbablemultidrugresistanceproteinNorMOS=ClostridiumintestinaleOX=36845GN=HZF06_05535PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3297119140625	2	540.328611	1078.64267	-1.5762	-0.00085169	4.4127	0.0023843	2.8364	0.0015326	540.3309156564876	138.68	4.2384	138.45	137.13	141.37	-0.22697					227	86	3	0	0	0	0.73286	1	13961	13961		26.796	5.8492	1	66382			27508	35226	22528	22556	30794	30794					0.1064926503922834
LAFCRRHV	8	Unmodified	_LAFCRRHV_					0	0	0		ENSG00000158050|ENST00000288943|DUSP2	ENSG00000158050|ENST00000288943|DUSP2	ENSG00000158050|ENST00000288943|DUSP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.2926940917969	2	501.276721	1000.53889	-1.6786	-0.00084142	-3.0946	-0.0015513	-4.7732	-0.0023927	501.27504331993276	106.86	0.57975	104.99	104.8	105.38	-1.8785					18	10	2	0	0	0	0.028476	1	9738	9738		14.664	0	1	55903			27509	5927	22529	22557	30795	30795					0.038640794505795384
LAFCTGIFSHF	11	Unmodified	_LAFCTGIFSHF_					0	0	0			REV__ENSG00000144935|ENST00000476941|TRPC1	REV__ENSG00000144935|ENST00000476941|TRPC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	622.3289184570312	2	621.802434	1241.59032	-0.50556	-0.00031436	0.10017	6.2286E-05	-0.40539	-0.00025207	621.8023685780826	30.111	0.44814	30.111	29.935	30.383	0					13	8	2	0	0	0	0.026079	1	1111	1111		10.265	0	1	101080	+		27510	19945	22530	22558	30796	30796					-0.020816413660440958
LAFHTLSH	8	Unmodified	_LAFHTLSH_					0	0	0			REV__ENSG00000234224|ENST00000455783|TMEM229A	REV__ENSG00000234224|ENST00000455783|TMEM229A	MULTI-SECPEP	OvCa99_classI_Rep5	1	462.76214599609375	2	463.248152	924.481751	2.7387	0.0012687	2.7663	0.0012815	5.5049	0.0025502	463.24934943098987	86.551	0.53059	86.551	86.271	86.801	0					17	12	2	0	0	0	0.028476	1	9126	9126		25.45	0	1	268610	+		27511	23399	22531	22559	30797	30797					0.016489354458599337
LAFLFVLLL	9	Unmodified	_LAFLFVLLL_					0	0	0		ENSG00000100147|ENST00000255784|CCDC134	ENSG00000100147|ENST00000255784|CCDC134	ENSG00000100147|ENST00000255784|CCDC134	MULTI-SECPEP	OvCa9_classI_Rep3	3	524.805419921875	2	524.843897	1047.67324	-1.7272	-0.0009065	1.1166	0.00058602	-0.61062	-0.00032048	524.8446038576892	92.637	0.22978	90.675	90.514	90.744	-1.9617					8	4	2	0	0	0	0.02744	1	5872	5872		60.404	0	1	27386			27512	2015	22532	22560	30798	30798					0.15131043424275958
LAFLPRRR	8	Unmodified	_LAFLPRRR_					0	0	0			REV__TNFRSF11A|p.N174Tfs*9|1|0.08|ENSG00000141655|chr18:62358338-62358338|C/-|frameshift_variant	REV__TNFRSF11A|p.N174Tfs*9|1|0.08|ENSG00000141655|chr18:62358338-62358338|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	514.2428588867188	2	514.827435	1027.64032	-0.63785	-0.00032838	-1.7668	-0.00090958	-2.4046	-0.001238	514.826513173587	84.94	1.1883	82.72	82.398	83.586	-2.2204					43	23	2	0	0	0	0.028476	1	5023	5023		20.482	1.1219	1	105350	+		27513	19756	22533	22561	30799	30799					0.1276027414478449
LAFLSYLS	8	Unmodified	_LAFLSYLS_					0	0	0		ENST00000443016.1_1_10:11607160-11607337:-|nuORF	ENST00000443016.1_1_10:11607160-11607337:-|nuORF	ENST00000443016.1_1_10:11607160-11607337:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.7801513671875	2	457.255111	912.49567	-0.69622	-0.00031835	-3.3173	-0.0015169	-4.0136	-0.0018352	457.2534868158945	81.326	0.92738	78.616	78.249	79.176	-2.7106					21	18	2	0	0	0	0.028476	1	6640	6640		44.531	0	1	31639			27514	11948	22534	22562	30800	30800					0.035921681542731676
LAFLSYLS	8	Unmodified	_LAFLSYLS_					0	0	0		ENST00000443016.1_1_10:11607160-11607337:-|nuORF	ENST00000443016.1_1_10:11607160-11607337:-|nuORF	ENST00000443016.1_1_10:11607160-11607337:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	457.255111	912.49567	-0.067922	-3.1058E-05	-4.0108	-0.0018339	-4.0787	-0.001865	457.2530761017926	80.598	0.92675	78.275	78.03	78.957	-2.3226	-0.17033	-0.00020986	NaN	44.531	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31068			27515	11948	22534	22562							0.035921681542731676
LAFMSFCII	9	Unmodified	_LAFMSFCII_					0	0	0		SIGLEC8|p.L375M|1|0.17|ENSG00000105366|chr19:51454709-51454709|G/T|missense_variant	SIGLEC8|p.L375M|1|0.17|ENSG00000105366|chr19:51454709-51454709|G/T|missense_variant	SIGLEC8|p.L375M|1|0.17|ENSG00000105366|chr19:51454709-51454709|G/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	522.7691040039062	2	522.766474	1043.5184	0.69254	0.00036204	4.2484	0.0022209	4.9409	0.0025829	522.7685836509113	155.48	0.76801	155.48	155.12	155.89	0					35	14	3	0	0	0	0.27546	1	18229	18229		65.803	14.468	1	333210			27516	32819	22535	22563	30801	30801					-0.001622720440991543
LAFNKKLGW	9	Unmodified	_LAFNKKLGW_					0	0	0			REV__ENST00000506400.1_1_5:64906824-64920129:-|nuORF	REV__ENST00000506400.1_1_5:64906824-64920129:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.3016357421875	2	538.816202	1075.61785	-0.36371	-0.00019597	-4.1609	-0.002242	-4.5246	-0.0024379	538.8138591799512	54.25	0.32982	54.25	54.048	54.378	0					9	7	2	0	0	0	0.027462	1	4362	4362		26.796	0	1	133860	+		27517	18162	22536	22564	30802	30802					0.08306629956518918
LAFPCCSSSL	10	Unmodified	_LAFPCCSSSL_					0	0	0			REV__ENST00000380243.8_2_14:99979836-99979959:-|nuORF	REV__ENST00000380243.8_2_14:99979836-99979959:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	514.2344970703125	2	514.232996	1026.45144	1.798	0.00092457	0.11836	6.0867E-05	1.9163	0.00098544	514.2329702513193	110.87	0.57294	110.87	110.63	111.2	0					30	12	4	0	0	0	0.33376	1	12594	12594		76.774	8.2894	1	499570	+		27518	25176	22537	22565	30803	30803					-0.0607292732586302
LAFPCCSSSL	10	Unmodified	_LAFPCCSSSL_					0	0	0			REV__ENST00000380243.8_2_14:99979836-99979959:-|nuORF	REV__ENST00000380243.8_2_14:99979836-99979959:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	514.232996	1026.45144	1.798	0.00092457	0.11836	6.0867E-05	1.9163	0.00098544	514.2329702513193	110.87	0.57294	110.87	110.63	111.2	0	0	0	NaN	76.774	30	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	499570	+		27519	25176	22537	22565							-0.0607292732586302
LAFPLPILA	9	Unmodified	_LAFPLPILA_					0	0	0		ENST00000593139.1_1_17:40832056-40832152:+|nuORF	ENST00000593139.1_1_17:40832056-40832152:+|nuORF	ENST00000593139.1_1_17:40832056-40832152:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.77838134765625	2	477.804771	953.59499	-0.81823	-0.00039095	0.9901	0.00047308	0.17188	8.2123E-05	477.8048470157542	43.726	0.75335	40.718	40.536	41.289	-3.0074					26	14	2	0	0	0	0.027412	1	2174	2174		60.404	15.873	1	61270			27520	14151	22538	22566	30804	30804					0.11633610839032826
LAFPTASAAPK	11	Unmodified	_LAFPTASAAPK_					0	0	0			REV__nc|ENSG00000139496|Q9BVL2-2|NUP58	REV__nc|ENSG00000139496|Q9BVL2-2|NUP58	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.7764892578125	2	537.303124	1072.5917	2.6076	0.0014011	-1.5597	-0.00083801	1.048	0.00056307	537.3029109937711	75.16	0.2817	75.16	75.087	75.369	0					10	6	2	0	0	0	0.025759	1	7480	7480		21.686	6.0439	1	532740	+		27521	19613	22539	22567	30805	30805					0.058303159943761784
LAFQISKEL	9	Unmodified	_LAFQISKEL_					0	0	0			REV__nc|ENSG00000134283|Q8NEY8-6|PPHLN1	REV__nc|ENSG00000134283|Q8NEY8-6|PPHLN1	MULTI-MSMS	OvCa9_classI_Rep2	2	524.8072509765625	2	524.8055	1047.59645	-1.0909	-0.00057252	-1.8521	-0.00097202	-2.9431	-0.0015445	524.8041430606991	117.22	1.2891	117.09	116.96	118.25	-0.12869					58	25	3	0	0	0	0.27001	1	11251	11251		66.429	3.4509	1	262990	+		27522	19191	22540	22568	30806	30806					0.07455200137133033
LAFQISKEL	9	Unmodified	_LAFQISKEL_					0	0	0			REV__nc|ENSG00000134283|Q8NEY8-6|PPHLN1	REV__nc|ENSG00000134283|Q8NEY8-6|PPHLN1	MULTI-MSMS	OvCa9_classI_Rep3	3	524.8065795898438	2	524.8055	1047.59645	-0.80273	-0.00042128	-1.7483	-0.0009175	-2.551	-0.0013388	524.8041196356187	117.99	1.0403	116.96	116.79	117.83	-1.0324					61	20	4	0	0	0	0.091859	1	8891	8891		99.375	0.74558	1	347220	+		27523	19191	22540	22568	30807	30807					0.07455200137133033
LAFSRVDIL	9	Unmodified	_LAFSRVDIL_					0	0	0		CASS4|p.G35V|1|0.06|ENSG00000087589|chr20:56437231-56437231|G/T|missense_variant	CASS4|p.G35V|1|0.06|ENSG00000087589|chr20:56437231-56437231|G/T|missense_variant	CASS4|p.G35V|1|0.06|ENSG00000087589|chr20:56437231-56437231|G/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	517.3042602539062	2	517.305667	1032.59678	2.058	0.0010646	-1.7496	-0.00090509	0.30838	0.00015953	517.3046010027335	125.01	0.9949	123.96	123.58	124.58	-1.0519					44	18	3	0	0	0	0.44568	1	9710	9710		47.657	5.2612	1	149470			27524	187	22541	22569	30808	30808					0.08178619856994374
LAFVFVII	8	Unmodified	_LAFVFVII_					0	0	0			REV__SCN10A|p.F1193Sfs*12|1|0.06|ENSG00000185313|chr3:38718756-38718757|-/G|frameshift_variant	REV__SCN10A|p.F1193Sfs*12|1|0.06|ENSG00000185313|chr3:38718756-38718757|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	461.25714111328125	2	461.29404	920.573526	-2.4187	-0.0011157	-2.5567	-0.0011794	-4.9754	-0.0022951	461.2927376120069	88.53	0.6077	85.927	85.629	86.237	-2.6027					16	11	2	0	0	0	0.028476	1	7564	7564		16.705	6.5202	1	21574	+		27525	22494	22542	22570	30809	30809					0.11006225810342585
LAFVFVII	8	Unmodified	_LAFVFVII_					0	0	0			REV__SCN10A|p.F1193Sfs*12|1|0.06|ENSG00000185313|chr3:38718756-38718757|-/G|frameshift_variant	REV__SCN10A|p.F1193Sfs*12|1|0.06|ENSG00000185313|chr3:38718756-38718757|-/G|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	461.29404	920.573526	1.0962	0.00050569	-6.1904	-0.0028556	-5.0941	-0.0023499	461.29120702327185	87.38	0.78872	85.949	85.642	86.431	-1.4311	0.037311	-0.0018838	NaN	24.504	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14523	+		27526	22494	22542	22570							0.11006225810342585
LAFVFVII	8	Unmodified	_LAFVFVII_					0	0	0			REV__SCN10A|p.F1193Sfs*12|1|0.06|ENSG00000185313|chr3:38718756-38718757|-/G|frameshift_variant	REV__SCN10A|p.F1193Sfs*12|1|0.06|ENSG00000185313|chr3:38718756-38718757|-/G|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	461.29404	920.573526	-0.61233	-0.00028246	-3.3103	-0.001527	-3.9226	-0.0018095	461.292399052163	87.989	0.71568	85.858	85.648	86.364	-2.1309	-0.053271	0.00077331	NaN	24.504	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25286	+		27527	22494	22542	22570							0.11006225810342585
LAFVHAAL	8	Unmodified	_LAFVHAAL_					0	0	0			REV__ENSG00000170412|ENST00000392627|GPRC5C	REV__ENSG00000170412|ENST00000392627|GPRC5C	MULTI-SECPEP	OvCa9_classI_Rep2	2	422.2225341796875	2	421.250163	840.485774	-0.75766	-0.00031916	-4.408	-0.0018569	-5.1657	-0.0021761	421.2481852731434	60.841	0.89751	58.071	57.659	58.557	-2.7702					19	16	2	0	0	0	0.028476	1	4495	4495		24.504	7.799	1	20210	+		27528	21538	22543	22571	30810	30810					0.05915024939565683
LAGAELLTK	9	Unmodified	_LAGAELLTK_					0	0	0			REV__tr|A0A7D7A1H9|A0A7D7A1H9_9CLOTAnkyrinrepeatdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15355PE=4SV=1	REV__tr|A0A7D7A1H9|A0A7D7A1H9_9CLOTAnkyrinrepeatdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15355PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	459.2173767089844	2	458.279118	914.543683	2.4222	0.00111	-2.0491	-0.00093907	0.37305	0.00017096	458.27904778127106	86.126	0.59897	86.126	85.912	86.511	0					31	14	4	0	0	0	0.027418	1	9050	9050		44.377	0	1	985820	+		27529	32492	22544	22572	30811	30811					0.08299242074326685
LAGAERDHS	9	Unmodified	_LAGAERDHS_					0	0	0		ENST00000415816.6_2_17:41158824-41164235:+|nuORF	ENST00000415816.6_2_17:41158824-41164235:+|nuORF	ENST00000415816.6_2_17:41158824-41164235:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.2650146484375	2	478.23323	954.451907	0.20154	9.6382E-05	-3.5679	-0.0017063	-3.3664	-0.0016099	478.23165292432964	62.051	0.77087	58.593	58.29	59.061	-3.4577					21	15	2	0	0	0	0.027426	1	4310	4310		63.306	5.495	1	44820			27530	11594	22545	22573	30812	30812					-0.027140482901359064
LAGAGGGG	8	Unmodified	_LAGAGGGG_					0	0	0		nc|ENSG00000127980|O43933-2|PEX1;ENSG00000127980|ENST00000248633|PEX1;ENST00000484913.5_1_7:92148293-92157749:-|nuORF;ENSG00000142408|ENST00000270458|CACNG8;nc|ENSG00000157353|Q8N0W3-2|FCSK;ENSG00000157353|ENST00000288078|FCSK	nc|ENSG00000127980|O43933-2|PEX1;ENSG00000142408|ENST00000270458|CACNG8;nc|ENSG00000157353|Q8N0W3-2|FCSK	nc|ENSG00000127980|O43933-2|PEX1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.7798461914062	1	559.283451	558.276175	0.34297	0.00019182	3.4904	0.0019521	3.8333	0.0021439	559.2817878370797	82.414	0.48895	79.731	79.441	79.93	-2.6829					10	9	2	0	0	0	0.028476	1	6832	6832		5.0869	0	1	19893			27531	3857;4970;5889	22546	22574	30813	30813					-0.020632180135748968
LAGAGRTRLA	10	Unmodified	_LAGAGRTRLA_					0	0	0			REV__ENST00000378203.5_1_10:15139264-15139378:+|nuORF	REV__ENST00000378203.5_1_10:15139264-15139378:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.7809143066406	2	493.298707	984.582862	0.18093	8.9251E-05	-0.84617	-0.00041742	-0.66525	-0.00032817	493.2981868603723	48.112	1.2848	45.004	44.581	45.866	-3.1077					38	24	3	0	0	0	0.026982	1	2603	2603		23.042	6.5693	1	150620	+		27532	25137	22547	22575	30814	30814					0.08995387148547707
LAGAGRTRLA	10	Unmodified	_LAGAGRTRLA_					0	0	0			REV__ENST00000378203.5_1_10:15139264-15139378:+|nuORF	REV__ENST00000378203.5_1_10:15139264-15139378:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	493.298707	984.582862	-0.13694	-6.7553E-05	-0.20928	-0.00010324	-0.34623	-0.00017079	493.29846649883353	47.697	0.64353	44.988	44.737	45.38	-2.7097	-0.0082359	0.00034961	NaN	23.042	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51743	+		27533	25137	22547	22575							0.08995387148547707
LAGAIAQSSI	10	Unmodified	_LAGAIAQSSI_					0	0	0		nc|ENSG00000148339|Q6KCM7-2|SLC25A25;ENSG00000148339|ENST00000373069|SLC25A25;nc|ENSG00000148339|Q6KCM7-6|SLC25A25;nc|ENSG00000148339|Q6KCM7|SLC25A25;nc|ENSG00000148339|Q6KCM7-4|SLC25A25;nc|ENSG00000148339|Q6KCM7-5|SLC25A25	nc|ENSG00000148339|Q6KCM7-2|SLC25A25	nc|ENSG00000148339|Q6KCM7-2|SLC25A25	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.7538757324219	2	465.766374	929.518196	-0.92912	-0.00043275	0.85619	0.00039878	-0.072934	-3.397E-05	465.7665310494898	53.473	1.0229	50.265	49.944	50.967	-3.208					41	19	3	0	0	0	0.02792	1	3260	3260		79.713	0	1	91843			27534	5401	22548	22576	30815	30815					0.05061767551910634
LAGALVWVL	9	Unmodified	_LAGALVWVL_					0	0	0			REV__nc|ENSG00000089060|Q6J4K2-2|SLC8B1	REV__nc|ENSG00000089060|Q6J4K2-2|SLC8B1	MULTI-SECPEP	OvCa9_classI_Rep2	2	470.75482177734375	2	471.294571	940.574589	-0.66149	-0.00031175	-3.7537	-0.0017691	-4.4152	-0.0020809	471.29278419212005	59.982	0.98936	57.212	56.83	57.819	-2.7702					33	18	3	0	0	0	0.027462	1	4363	4363		21.702	1.2205	1	47807	+		27535	17198	22549	22577	30816	30816					0.1019244017921892
LAGALVWVL	9	Unmodified	_LAGALVWVL_					0	0	0			REV__nc|ENSG00000089060|Q6J4K2-2|SLC8B1	REV__nc|ENSG00000089060|Q6J4K2-2|SLC8B1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	471.294571	940.574589	0.94398	0.00044489	-5.2735	-0.0024854	-4.3295	-0.0020405	471.29200818820584	60.828	0.80007	57.398	57.144	57.944	-3.43	0.092955	-0.00094719	NaN	21.702	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93160	+		27536	17198	22549	22577							0.1019244017921892
LAGANVRLV	9	Unmodified	_LAGANVRLV_					0	0	0			REV__ENSG00000075089|ENST00000188312|ACTR6	REV__ENSG00000075089|ENST00000188312|ACTR6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.76715087890625	2	456.784902	911.55525	1.0836	0.00049499	0.36896	0.00016854	1.4526	0.00066352	456.7859869089904	37.339	0.49909	34.447	34.092	34.591	-2.8925					13	9	2	0	0	0	0.027462	1	1375	1375		42.474	1.9018	1	12630	+		27537	16960	22550	22578	30817	30817					0.09593483888318133
LAGATGVSPQ	10	Unmodified	_LAGATGVSPQ_					0	0	0			REV__ENST00000520810.5_1_8:42188602-42189049:+|nuORF	REV__ENST00000520810.5_1_8:42188602-42189049:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.79742431640625	2	450.742899	899.471246	-0.36406	-0.0001641	0.92881	0.00041865	0.56475	0.00025455	450.7431538295252	45.542	1.2021	42.504	42.281	43.484	-3.0385					39	22	3	0	0	0	0.02792	1	2372	2372		60.118	10.677	1	164360	+		27538	27061	22551	22579	30818	30818					0.017489080007635494
LAGATVQAIL	10	Unmodified	_LAGATVQAIL_					0	0	0			REV__ENSG00000085117|ENST00000227155|CD82	REV__ENSG00000085117|ENST00000227155|CD82	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.81072998046875	2	478.792392	955.570232	-0.52633	-0.000252	1.7679	0.00084644	1.2415	0.00059444	478.7931149179463	59.191	0.83592	56.411	56.137	56.973	-2.7801					24	15	2	0	0	0	0.026752	1	4320	4320		53.351	22.848	1	24320	+		27539	17128	22552	22580	30819	30819					0.09066930965661868
LAGATVQAIL	10	Unmodified	_LAGATVQAIL_					0	0	0			REV__ENSG00000085117|ENST00000227155|CD82	REV__ENSG00000085117|ENST00000227155|CD82	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.81201171875	2	478.792392	955.570232	0.46732	0.00022375	-0.90693	-0.00043423	-0.43961	-0.00021048	478.79191767122325	59.803	0.93383	56.411	56.002	56.936	-3.392					39	18	3	0	0	0	0.026639	1	4023	4023		53.351	19.179	1	101440	+		27540	17128	22552	22580	30820	30820					0.09066930965661868
LAGDKVGKL	9	Unmodified	_LAGDKVGKL_					0	0	0		ENSG00000198759|ENST00000361306|EGFL6;nc|ENSG00000198759|Q8IUX8-2|EGFL6	ENSG00000198759|ENST00000361306|EGFL6	ENSG00000198759|ENST00000361306|EGFL6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.2336120605469	2	450.779285	899.544017	-0.42161	-0.00019005	-4.3027	-0.0019395	-4.7243	-0.0021296	450.77934428763933	43.65	1.0664	40.642	40.378	41.444	-3.0074					34	20	2	0	0	0	0.027441	1	2155	2155		25.574	0	1	27557			27541	8869	22553	22581	30821	30821					0.09022661794188025
LAGDTIKVTL	10	Unmodified	_LAGDTIKVTL_					0	0	0			REV__tr|A0A553SSE0|A0A553SSE0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02825PE=4SV=1	REV__tr|A0A553SSE0|A0A553SSE0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02825PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.7567138671875	2	515.810782	1029.60701	-1.5915	-0.00082091	-3.8457	-0.0019836	-5.4372	-0.0028046	515.8089832905914	103.88	0.59541	103.88	103.43	104.02	0					18	13	2	0	0	0	0.026802	1	11604	11604		34.173	1.3601	1	143010	+		27542	30827	22554	22582	30822	30822					0.09339182791586609
LAGDTIKVTL	10	Unmodified	_LAGDTIKVTL_					0	0	0			REV__tr|A0A553SSE0|A0A553SSE0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02825PE=4SV=1	REV__tr|A0A553SSE0|A0A553SSE0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02825PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	515.810782	1029.60701	-0.31598	-0.00016299	-10.574	-0.005454	-10.89	-0.005617	515.8049049519725	105.5	0.39615	103.48	103.4	103.79	-2.0161	-0.19805	-0.0048563	NaN	19.997	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22703	+		27543	30827	22554	22582							0.09339182791586609
LAGEEELSK	9	Unmodified	_LAGEEELSK_					0	0	0		nc|ENSG00000172667|Q9HA38-2|ZMAT3;ENSG00000172667|ENST00000311417|ZMAT3	nc|ENSG00000172667|Q9HA38-2|ZMAT3	nc|ENSG00000172667|Q9HA38-2|ZMAT3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	488.7703857421875	2	488.253297	974.492041	-0.48121	-0.00023495	0.39537	0.00019304	-0.085835	-4.1909E-05	488.25332924529056	65.562	1.8971	62.076	61.599	63.496	-3.4854					71	38	4	0	0	0	0.027447	1	4701	4701		39.253	0	1	702880			27544	7310	22555	22583	30823	30823					0.0037745358976053467
LAGFFKSRA	9	Unmodified	_LAGFFKSRA_					0	0	0		chr20:58891865-58892822|404|17.68|0.42|5.38|+|1|GNAS,None|1	chr20:58891865-58892822|404|17.68|0.42|5.38|+|1|GNAS,None|1	chr20:58891865-58892822|404|17.68|0.42|5.38|+|1|GNAS,None|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.8010559082031	2	498.784902	995.55525	-0.46691	-0.00023289	2.5465	0.0012702	2.0796	0.0010373	498.78606763783694	52.05	0.25164	48.859	48.709	48.961	-3.1906					7	4	2	0	0	0	0.027456	1	3097	3097		38.806	0	1	35266			27545	458	22556	22584	30824	30824					0.05729483888319464
LAGFFLLAD	9	Unmodified	_LAGFFLLAD_					0	0	0		ENST00000610073.1_1_13:114523839-114538639:-|nuORF	ENST00000610073.1_1_13:114523839-114538639:-|nuORF	ENST00000610073.1_1_13:114523839-114538639:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.2939758300781	2	483.768386	965.522219	-0.34662	-0.00016768	-3.3794	-0.0016348	-3.726	-0.0018025	483.7666237242627	91.204	0.66855	88.661	88.193	88.862	-2.5425					20	12	2	0	0	0	0.027441	1	7830	7830		42.474	0	1	20993			27546	14308	22557	22585	30825	30825					0.038078570456150374
LAGFGFLTLL	10	Unmodified	_LAGFGFLTLL_					0	0	0		ENSG00000113946|ENST00000264734|CLDN16	ENSG00000113946|ENST00000264734|CLDN16	ENSG00000113946|ENST00000264734|CLDN16	MULTI-MSMS	OvCa9_classI_Rep2	2	526.3143920898438	2	526.312961	1050.61137	0.087693	4.6154E-05	3.0503	0.0016054	3.138	0.0016515	526.3143544270938	124.13	1.5768	123.9	123.24	124.82	-0.23193					93	31	4	0	0	0	0.50656	1	12031	12031		53.351	7.3792	1	220960			27547	3003	22558	22586	30826	30826					0.08808692005140983
LAGFGFLTLL	10	Unmodified	_LAGFGFLTLL_					0	0	0		ENSG00000113946|ENST00000264734|CLDN16	ENSG00000113946|ENST00000264734|CLDN16	ENSG00000113946|ENST00000264734|CLDN16	MULTI-MSMS	OvCa9_classI_Rep3	3	526.3139038085938	2	526.312961	1050.61137	0.91829	0.00048331	2.2599	0.0011894	3.1782	0.0016727	526.3139752685214	125.3	2.0349	124.25	123.69	125.72	-1.0519					99	38	3	0	0	0	0.43592	1	9774	9774		63.306	4.5243	1	239120			27548	3003	22558	22586	30827	30827					0.08808692005140983
LAGFGLDVTV	10	Unmodified	_LAGFGLDVTV_					0	0	0		ENSG00000197763|ENST00000524230|TXNRD3;ENST00000524230.6_3_3:126326756-126373974:-|nuORF	ENSG00000197763|ENST00000524230|TXNRD3	ENSG00000197763|ENST00000524230|TXNRD3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.8030090332031	2	496.276575	990.538597	0.81366	0.0004038	-0.76113	-0.00037773	0.052523	2.6066E-05	496.27551297005607	96.654	1.0023	94.229	93.964	94.966	-2.4256					29	19	2	0	0	0	0.026802	1	8616	8616		51.335	5.3835	1	52102			27549	8746	22559	22587	30828	30828					0.04294938211705812
LAGFGLDVTV	10	Unmodified	_LAGFGLDVTV_					0	0	0		ENSG00000197763|ENST00000524230|TXNRD3;ENST00000524230.6_3_3:126326756-126373974:-|nuORF	ENSG00000197763|ENST00000524230|TXNRD3	ENSG00000197763|ENST00000524230|TXNRD3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	496.276575	990.538597	-0.043349	-2.1513E-05	-0.43919	-0.00021796	-0.48254	-0.00023947	496.2759624011251	95.321	0.84184	94.293	94.022	94.863	-1.0281	0.037077	-0.00029262	NaN	71.296	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46519			27550	8746	22559	22587							0.04294938211705812
LAGFGLDVTV	10	Unmodified	_LAGFGLDVTV_					0	0	0		ENSG00000197763|ENST00000524230|TXNRD3;ENST00000524230.6_3_3:126326756-126373974:-|nuORF	ENSG00000197763|ENST00000524230|TXNRD3	ENSG00000197763|ENST00000524230|TXNRD3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	496.276575	990.538597	-0.96452	-0.00047867	0.87115	0.00043233	-0.093366	-4.6335E-05	496.27639518454544	96.075	0.84916	94.246	93.978	94.827	-1.8286	-0.0098108	0.001008	NaN	71.296	31	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64769			27551	8746	22559	22587							0.04294938211705812
LAGFLFSH	8	Unmodified	_LAGFLFSH_					0	0	0			REV__nc|ENSG00000114487|Q86VD1-2|MORC1	REV__nc|ENSG00000114487|Q86VD1-2|MORC1	MULTI-MSMS	OvCa99_classI_Rep5	1	446.2418518066406	2	446.239796	890.465038	0.27319	0.00012191	-0.60751	-0.00027109	-0.33431	-0.00014918	446.23939330441766	67.815	1.0355	67.815	67.528	68.564	0					63	25	4	0	0	0	0.38514	1	6398	6398		90.939	16.422	1	4338400	+		27552	18189	22560	22588	30829	30829					0.015424345598944456
LAGFLFSH	8	Unmodified	_LAGFLFSH_					0	0	0			REV__nc|ENSG00000114487|Q86VD1-2|MORC1	REV__nc|ENSG00000114487|Q86VD1-2|MORC1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	446.239796	890.465038	0.27319	0.00012191	-0.60751	-0.00027109	-0.33431	-0.00014918	446.23939330441766	67.815	1.0355	67.815	67.528	68.564	0	0	0	NaN	90.939	63	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4338400	+		27553	18189	22560	22588							0.015424345598944456
LAGFLHSDLEL	11	Unmodified	_LAGFLHSDLEL_					0	0	0		ENSG00000154252|ENST00000192314|GAL3ST2	ENSG00000154252|ENST00000192314|GAL3ST2	ENSG00000154252|ENST00000192314|GAL3ST2	MULTI-MSMS	OvCa99_classI_Rep5	1	607.8252563476562	2	607.824421	1213.63429	0.80608	0.00048995	1.6793	0.0010207	2.4854	0.0015107	607.8251557533721	141.21	0.7552	141.21	140.88	141.64	0					30	14	3	0	0	0	0.48315	1	16492	16492		54.776	0	1	125160			27554	5722	22561	22589	30830	30830					0.03601666331951492
LAGFVSQS	8	Unmodified	_LAGFVSQS_					0	0	0		ENST00000517973.1_1_5:150400197-150406463:+|nuORF;ENST00000519214.5_1_5:150400197-150400430:+|nuORF;ENSG00000211445|ENST00000388825|GPX3	ENST00000517973.1_1_5:150400197-150406463:+|nuORF	ENST00000517973.1_1_5:150400197-150406463:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	404.7386474609375	2	404.713611	807.412668	1.6469	0.00066654	-0.84005	-0.00033998	0.8069	0.00032656	404.71299552298115	57.406	0.8657	54.061	53.832	54.698	-3.3449					28	16	2	0	0	0	0.028476	1	3788	3788		11.511	0	1	25206			27555	9104	22562	22590	30831	30831					0.0012585142628722679
LAGGAAGSLAI	11	Unmodified	_LAGGAAGSLAI_					0	0	0			REV__tr|A0A553SS20|A0A553SS20_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_02095PE=4SV=1	REV__tr|A0A553SS20|A0A553SS20_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_02095PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	450.26788330078125	2	450.761092	899.507631	1.7603	0.00079347	-1.2866	-0.00057993	0.47372	0.00021353	450.7601120261078	62.257	1.6289	59.223	58.535	60.163	-3.0339					61	37	2	0	0	0	0.025681	1	2176	2176		34.173	6.2903	1	13038	+		27556	30790	22563	22591	30832	30832					0.053857848974644185
LAGGDESYGP	10	Unmodified	_LAGGDESYGP_					0	0	0			REV__ENST00000590402.1_1_17:66422197-66423441:-|nuORF	REV__ENST00000590402.1_1_17:66422197-66423441:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.82781982421875	2	483.214172	964.413791	-0.33287	-0.00016085	3.8085	0.0018403	3.4756	0.0016795	483.21602100400844	74.64	0.58117	71.409	71.192	71.773	-3.2308					16	11	2	0	0	0	0.026871	1	5825	5825		21.96	0	1	49626	+		27557	16882	22564	22592	30833	30833					-0.06983978995469897
LAGGGGGL	8	Unmodified	_LAGGGGGL_					0	0	0		tr|A0A553SS88|A0A553SS88_NIACI2,3-butanedioldehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_02645PE=3SV=1;ENST00000538335.1_1_12:122239626-122241682:-|nuORF	tr|A0A553SS88|A0A553SS88_NIACI2,3-butanedioldehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_02645PE=3SV=1	tr|A0A553SS88|A0A553SS88_NIACI2,3-butanedioldehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_02645PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	601.805419921875	1	601.330402	600.323125	0.11715	7.0445E-05	-1.8116	-0.0010894	-1.6945	-0.0010189	601.329243730295	68.727	0.20938	68.727	68.649	68.858	0					6	4	2	0	0	0	0.028476	1	6514	6514		5.0869	0	1	155290			27558	34345	22565	22593	30834	30834					0.00697641537567506
LAGGPWIL	8	Unmodified	_LAGGPWIL_					0	0	0		ENST00000344773.6_1_2:28561412-28561616:+|nuORF	ENST00000344773.6_1_2:28561412-28561616:+|nuORF	ENST00000344773.6_1_2:28561412-28561616:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.2259216308594	2	413.744714	825.474875	3.2851	0.0013592	0.41388	0.00017124	3.699	0.0015304	413.7443368499139	86.758	0.66364	86.758	86.511	87.174	0					33	15	4	0	0	0	0.028476	1	9218	9218		24.504	0	1	540750			27559	10615	22566	22594	30835	30835					0.05515622565269496
LAGGSEKGPL	10	Unmodified	_LAGGSEKGPL_					0	0	0		L1MC1_dup7132|chr8:144750012-144750846:-|1.0695587535362288|0.4006023584430365|1.42|429.0|4|1|sense	L1MC1_dup7132|chr8:144750012-144750846:-|1.0695587535362288|0.4006023584430365|1.42|429.0|4|1|sense	L1MC1_dup7132|chr8:144750012-144750846:-|1.0695587535362288|0.4006023584430365|1.42|429.0|4|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.782470703125	2	464.758549	927.502546	-0.71225	-0.00033102	3.9234	0.0018234	3.2112	0.0014924	464.7588894721304	52.562	1.3097	49.354	49.044	50.354	-3.208					50	25	3	0	0	0	0.027005	1	3183	3183		51.335	12.083	1	97317			27560	14602	22567	22595	30836	30836					0.03589481034862274
LAGGVQKIIN	10	Unmodified	_LAGGVQKIIN_					0	0	0			REV__ENST00000532147.1_1_11:129742643-129743711:-|nuORF	REV__ENST00000532147.1_1_11:129742643-129743711:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	506.8111572265625	2	506.811116	1011.60768	-1.285	-0.00065125	-0.29635	-0.00015019	-1.5813	-0.00080144	506.8109472666925	100.58	3.0909	98.975	98.659	101.75	-1.6053					152	59	4	0	0	0	0.12182	1	6850	6850		108.09	1.08	1	2966100	+		27561	27229	22568	22596	30837	30837					0.1023402223128187
LAGHCTVL	8	Unmodified	_LAGHCTVL_					0	0	0		PCDHA7|p.A363Vfs*11|1|0.1|ENSG00000204963|chr5:140835470-140835471|-/T|frameshift_variant;nc|ENSG00000204963|Q9UN72-2|PCDHA7;ENSG00000204963|ENST00000525929|PCDHA7	PCDHA7|p.A363Vfs*11|1|0.1|ENSG00000204963|chr5:140835470-140835471|-/T|frameshift_variant	PCDHA7|p.A363Vfs*11|1|0.1|ENSG00000204963|chr5:140835470-140835471|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	407.2189025878906	2	407.218006	812.421459	1.2712	0.00051765	0.17451	7.1064E-05	1.4457	0.00058872	407.2179432617135	104.07	1.0398	102.63	102.34	103.38	-1.4347					45	19	3	0	0	0	0.72134	1	7238	7238		39.021	1.993	1	243550			27562	9042	22569	22597	30838	30838					0.007745017911020113
LAGHPLYPY	9	Unmodified	_LAGHPLYPY_					0	0	0		ENSG00000165655|ENST00000372524|ZNF503;nc|ENSG00000165655|Q96F45-2|ZNF503;nc|ENSG00000165655|Q96F45-3|ZNF503	ENSG00000165655|ENST00000372524|ZNF503	ENSG00000165655|ENST00000372524|ZNF503	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2597045898438	2	515.77146	1029.52837	-0.70643	-0.00036436	-3.2988	-0.0017014	-4.0052	-0.0020658	515.7694307244058	44.535	0.76306	44.535	44.169	44.932	0					22	16	2	0	0	0	0.027462	1	2984	2984		29.842	9.8448	1	103220			27563	6585	22570	22598	30839	30839					0.014783752771336367
LAGIAQNPE	9	Unmodified	_LAGIAQNPE_					0	0	0		tr|A0A7D6ZWM7|A0A7D6ZWM7_9CLOTCyanophycinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19625PE=3SV=1	tr|A0A7D6ZWM7|A0A7D6ZWM7_9CLOTCyanophycinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19625PE=3SV=1	tr|A0A7D6ZWM7|A0A7D6ZWM7_9CLOTCyanophycinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19625PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	456.7445983886719	2	456.742899	911.471246	0.83476	0.00038127	1.2097	0.00055251	2.0444	0.00093378	456.7432871851498	105.62	0.69778	105.62	105.4	106.1	0					32	15	3	0	0	0	0.19758	1	11862	11862		76.774	8.2894	1	1442100			27564	35848	22571	22599	30840	30840					0.011969080007588673
LAGILMVIAI	10	Unmodified	_LAGILMVIAI_					0	0	0		ENSG00000157211|ENST00000530059|CDCP2	ENSG00000157211|ENST00000530059|CDCP2	ENSG00000157211|ENST00000530059|CDCP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.75103759765625	2	507.325014	1012.63547	-0.25202	-0.00012786	0.7276	0.00036913	0.47558	0.00024128	507.3254746247899	78.353	0.95848	75.536	74.922	75.88	-2.8165					23	19	2	0	0	0	0.026839	1	6301	6301		26.796	0	1	47062			27565	5881	22572	22600	30841	30841					0.12966209167132092
LAGKNPREF	9	Unmodified	_LAGKNPREF_					0	0	0		tr|A0A7D6ZW07|A0A7D6ZW07_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17125PE=4SV=1	tr|A0A7D6ZW07|A0A7D6ZW07_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17125PE=4SV=1	tr|A0A7D6ZW07|A0A7D6ZW07_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17125PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	516.2854614257812	2	516.285266	1030.55598	-0.48899	-0.00025246	-0.030607	-1.5802E-05	-0.5196	-0.00026826	516.285153684191	57.372	1.6977	54.58	54.03	55.728	-2.792					82	33	3	0	0	0	0.48324	1	4066	4066		44.117	0	1	519060			27566	35822	22573	22601	30842	30842					0.04192278537357197
LAGKQPGRT	9	Unmodified	_LAGKQPGRT_					0	0	0			REV__ENST00000318787.13_1_6:125613996-125621705:-|nuORF	REV__ENST00000318787.13_1_6:125613996-125621705:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.2521667480469	2	464.272158	926.529764	0.63832	0.00029636	4.1377	0.001921	4.776	0.0022174	464.2738796270754	74.255	0.81951	74.255	73.983	74.802	0					37	20	2	0	0	0	0.027462	1	7397	7397		51.335	7.2187	1	1822000	+		27567	24427	22574	22602	30843	30843					0.06356009365902082
LAGLATENL	9	Unmodified	_LAGLATENL_					0	0	0			REV__nc|ENSG00000075945|Q92845-4|KIFAP3	REV__nc|ENSG00000075945|Q92845-4|KIFAP3	MULTI-MSMS	OvCa99_classI_Rep5	1	451.25537109375	2	451.2531	900.491647	-0.82087	-0.00037042	1.9378	0.00087445	1.117	0.00050403	451.2540183904949	64.176	0.77695	64.176	63.854	64.631	0					35	18	3	0	0	0	0.055688	1	5815	5815		115.46	10.712	1	1888400	+		27568	16982	22575	22603	30844	30844					0.03742078660570769
LAGLATENL	9	Unmodified	_LAGLATENL_					0	0	0			REV__nc|ENSG00000075945|Q92845-4|KIFAP3	REV__nc|ENSG00000075945|Q92845-4|KIFAP3	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	451.2531	900.491647	-0.82087	-0.00037042	1.9378	0.00087445	1.117	0.00050403	451.2540183904949	64.176	0.77695	64.176	63.854	64.631	0	-0.15527	0.0031686	NaN	115.46	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1888400	+		27569	16982	22575	22603							0.03742078660570769
LAGLATENL	9	Unmodified	_LAGLATENL_					0	0	0			REV__nc|ENSG00000075945|Q92845-4|KIFAP3	REV__nc|ENSG00000075945|Q92845-4|KIFAP3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	451.2531	900.491647	2.0176	0.00091047	-1.5248	-0.00068806	0.49288	0.00022241	451.25214182657396	67.171	0.64407	64.51	64	64.644	-2.661	0.1785	4.3535E-05	NaN	115.46	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136030	+		27570	16982	22575	22603							0.03742078660570769
LAGLAYLVWS	10	Unmodified	_LAGLAYLVWS_					0	0	0			REV__nc|ENSG00000290320|P0DW85|H2BN1	REV__nc|ENSG00000290320|P0DW85|H2BN1	MULTI-SECPEP	OvCa9_classI_Rep3	3	545.8291015625	2	546.808042	1091.60153	-1.2576	-0.00068764	-1.8347	-0.0010032	-3.0922	-0.0016909	546.8069474328641	96.11	1.2614	94.281	93.93	95.191	-1.8286					45	24	2	0	0	0	0.026768	1	6395	6395		50.025	4.0726	1	77560	+		27571	29212	22576	22604	30845	30845					0.0593950399975256
LAGLGLPFDP	10	Unmodified	_LAGLGLPFDP_					0	0	0			REV__ENST00000486818.5_1_7:72951185-72951437:-|nuORF	REV__ENST00000486818.5_1_7:72951185-72951437:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	500.777587890625	2	500.279118	998.543683	1.5528	0.00077681	-4.0991	-0.0020507	-2.5463	-0.0012739	500.2775619125229	98.119	0.8979	98.119	97.654	98.552	0					52	20	4	0	0	0	0.55145	1	10777	10777		47.916	3.5384	1	4060200	+		27572	26589	22577	22605	30846	30846					0.04435242074328016
LAGLKTVSSY	10	Unmodified	_LAGLKTVSSY_					0	0	0		ENST00000441182.1_1_1:87018809-87018965:-|nuORF;ENSG00000170779|ENST00000336219|CDCA4	ENST00000441182.1_1_1:87018809-87018965:-|nuORF	ENST00000441182.1_1_1:87018809-87018965:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.79345703125	2	519.795132	1037.57571	-0.39548	-0.00020557	-2.2434	-0.0011661	-2.6389	-0.0013717	519.7938318646319	121.84	4.0005	120.49	119.9	123.9	-1.3479					152	78	4	0	0	0	0.41408	1	11532	11532		66.429	0.6261	1	769080			27573	7134	22578	22606	30847	30847					0.05842609757473838
LAGLQELGLL	10	Unmodified	_LAGLQELGLL_					0	0	0		nc|ENSG00000168907|Q68DD2-2|PLA2G4F;ENSG00000168907|ENST00000397272|PLA2G4F;nc|ENSG00000168907|Q68DD2-3|PLA2G4F	nc|ENSG00000168907|Q68DD2-2|PLA2G4F	nc|ENSG00000168907|Q68DD2-2|PLA2G4F	MULTI-MSMS	OvCa99_classI_Rep5	1	513.81396484375	2	513.813325	1025.6121	2.7039	0.0013893	0.036982	1.9002E-05	2.7409	0.0014083	513.8131075613927	97.286	0.81387	97.286	96.966	97.78	0					39	18	3	0	0	0	0.34811	1	10667	10667		75.043	0	1	3389700			27574	6954	22579	22607	30848	30848					0.10031486654179389
LAGLQELGLL	10	Unmodified	_LAGLQELGLL_					0	0	0		nc|ENSG00000168907|Q68DD2-2|PLA2G4F;ENSG00000168907|ENST00000397272|PLA2G4F;nc|ENSG00000168907|Q68DD2-3|PLA2G4F	nc|ENSG00000168907|Q68DD2-2|PLA2G4F	nc|ENSG00000168907|Q68DD2-2|PLA2G4F	MULTI-MATCH	OvCa9_classI_Rep2	2		2	513.813325	1025.6121	-0.33059	-0.00016986	-0.87143	-0.00044775	-1.202	-0.00061762	513.8128218025563	98.474	1.1391	97.581	97.216	98.355	-0.89305	0.14743	-0.00040911	NaN	75.043	40	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184180			27575	6954	22579	22607							0.10031486654179389
LAGLRKFV	8	Unmodified	_LAGLRKFV_					0	0	0		SDK1|p.G1830Rfs*24|1|0.09|ENSG00000146555|chr7:4210109-4210110|-/CAGACAATGGACTC|frameshift_variant;nc|ENSG00000146555|Q7Z5N4-3|SDK1;ENSG00000146555|ENST00000404826|SDK1;ENST00000476701.5_1_7:4169443-4308379:+|nuORF	SDK1|p.G1830Rfs*24|1|0.09|ENSG00000146555|chr7:4210109-4210110|-/CAGACAATGGACTC|frameshift_variant;ENST00000476701.5_1_7:4169443-4308379:+|nuORF	SDK1|p.G1830Rfs*24|1|0.09|ENSG00000146555|chr7:4210109-4210110|-/CAGACAATGGACTC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	451.7701721191406	2	452.292362	902.570172	-0.65724	-0.00029727	0.19478	8.8097E-05	-0.46246	-0.00020917	452.29222252860995	70.231	0.59787	70.231	70.005	70.603	0					29	14	3	0	0	0	0.028476	1	6769	6769		8.8223	0	1	849570			27576	5298;12470	22580	22608	30849	30849					0.11498975756330765
LAGLSILVLGA	11	Unmodified	_LAGLSILVLGA_					0	0	0			REV__nc|ENSG00000170909|Q8IYS5-6|OSCAR	REV__nc|ENSG00000170909|Q8IYS5-6|OSCAR	MULTI-MSMS	OvCa99_classI_Rep5	1	513.8323364257812	2	513.831517	1025.64848	1.8151	0.00093266	0.10403	5.3455E-05	1.9191	0.00098611	513.831411441901	110.25	1.1198	110.25	109.73	110.85	0					56	24	4	0	0	0	0.22384	1	12505	12505		76.774	7.9873	1	1416800	+		27577	21573	22581	22609	30850	30850					0.13668363550914364
LAGLSILVLGA	11	Unmodified	_LAGLSILVLGA_					0	0	0			REV__nc|ENSG00000170909|Q8IYS5-6|OSCAR	REV__nc|ENSG00000170909|Q8IYS5-6|OSCAR	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	513.831517	1025.64848	1.8151	0.00093266	0.10403	5.3455E-05	1.9191	0.00098611	513.831411441901	110.25	1.1198	110.25	109.73	110.85	0	0	0	NaN	76.774	56	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1416800	+		27578	21573	22581	22609							0.13668363550914364
LAGLWLGLGL	10	Unmodified	_LAGLWLGLGL_					0	0	0			REV__nc|ENSG00000008710|P98161-2|PKD1	REV__nc|ENSG00000008710|P98161-2|PKD1	MULTI-MSMS	OvCa9_classI_Rep2	2	506.8088684082031	2	506.813128	1011.6117	-1.1259	-0.00057063	-3.6411	-0.0018454	-4.767	-0.002416	506.81130069607957	99.678	3.3722	98.848	98.219	101.59	-0.83051					157	66	4	0	0	0	0.32406	1	9111	9111		77.944	3.9691	1	2351400	+		27579	16459	22582	22610	30851	30851					0.1063611172498895
LAGLYPMGY	9	Unmodified	_LAGLYPMGY_					0	0	0			REV__ENST00000194118.8_1_5:141305030-141307797:+|nuORF	REV__ENST00000194118.8_1_5:141305030-141307797:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.2890319824219	2	492.746596	983.478639	0.61806	0.00030455	-4.099	-0.0020198	-3.4809	-0.0017152	492.744369405379	66.974	0.54309	63.484	63.295	63.839	-3.4902					18	10	2	0	0	0	0.027462	1	4919	4919		14.664	3.7985	1	23987	+		27580	23692	22583	22611	30852	30852					-0.013760757231693788
LAGMALMK	8	Unmodified	_LAGMALMK_					0	0	0			REV__ENST00000503013.2_1_4:114891653-114899990:-|nuORF	REV__ENST00000503013.2_1_4:114891653-114899990:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	417.5754089355469	2	417.732435	833.450316	0.55799	0.00023309	0.35067	0.00014649	0.90866	0.00037958	417.7325097040523	37.59	0.44952	34.697	34.541	34.991	-2.8925					15	8	2	0	0	0	0.028476	1	1408	1408		14.664	0	1	10131	+		27581	22197	22584	22612	30853	30853					0.026929030958967815
LAGNGLLALL	10	Unmodified	_LAGNGLLALL_					0	0	0			REV__ENSG00000175485|ENST00000311352|OR52W1	REV__ENSG00000175485|ENST00000311352|OR52W1	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.2826232910156	2	477.80276	953.590967	1.5641	0.00074734	-3.6105	-0.0017251	-2.0464	-0.00097777	477.8007938093559	89.166	1.1365	87.799	87.28	88.417	-1.3676					31	22	2	0	0	0	0.026822	1	7801	7801		30.504	0	1	32993	+		27582	21900	22585	22613	30854	30854					0.11231521345325746
LAGNHQEPSL	10	Unmodified	_LAGNHQEPSL_					0	0	0		ENST00000377403.6_1_1:9330292-9330553:+|nuORF	ENST00000377403.6_1_1:9330292-9330553:+|nuORF	ENST00000377403.6_1_1:9330292-9330553:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.8220825195312	2	533.269813	1064.52507	2.2033	0.001175	-1.1124	-0.00059319	1.0909	0.00058177	533.2690630525617	137.23	0.62668	137.23	136.97	137.59	0					30	12	3	0	0	0	0.026606	1	16019	16019		44.377	0.26039	1	276100			27583	11087	22586	22614	30855	30855					-0.004609195675357114
LAGNQLKALT	10	Unmodified	_LAGNQLKALT_					0	0	0		nc|ENSG00000239732|Q9NR96-2|TLR9;nc|ENSG00000239732|Q9NR96-5|TLR9;ENSG00000239732|ENST00000360658|TLR9;nc|ENSG00000239732|Q9NR96-3|TLR9;nc|ENSG00000239732|Q9NR96-4|TLR9;PCBP4-TLR9|1|fusion	nc|ENSG00000239732|Q9NR96-2|TLR9	nc|ENSG00000239732|Q9NR96-2|TLR9	MULTI-MSMS	OvCa9_classI_Rep2	2	514.8108520507812	2	514.808574	1027.60259	0.28993	0.00014926	2.4273	0.0012496	2.7172	0.0013988	514.8099201043075	113.96	1.7767	113.84	113.47	115.24	-0.11777					99	35	4	0	0	0	0.49558	1	10865	10865		54.776	7.119	1	416770			27584	9330	22587	22615	30856	30856					0.08989718368638933
LAGPAAAVAA	10	Unmodified	_LAGPAAAVAA_					0	0	0			REV__AUH|p.E132Rfs*11|1|0.06|ENSG00000148090|chr9:91355907-91355908|-/T|frameshift_variant	REV__AUH|p.E132Rfs*11|1|0.06|ENSG00000148090|chr9:91355907-91355908|-/T|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.2174987792969	2	406.237253	810.459953	0.84719	0.00034416	4.385	0.0017813	5.2322	0.0021255	406.23891876255647	55.914	0.45521	55.914	55.723	56.178	0					18	10	3	0	0	0	0.026672	1	4589	4589		35.201	14.719	1	152510	+		27585	15687	22588	22616	30857	30857					0.04714130697266228
LAGPGPRVSV	10	Unmodified	_LAGPGPRVSV_					0	0	0			REV__ENST00000355703.3_1_11:65383672-65384310:+|nuORF	REV__ENST00000355703.3_1_11:65383672-65384310:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	476.7822570800781	2	476.782359	951.550165	0.47987	0.00022879	-0.57998	-0.00027652	-0.10011	-4.7731E-05	476.7819652613016	43.145	1.2386	40.436	40.114	41.353	-2.7097					56	24	4	0	0	0	0.59317	1	2380	2380		42.864	2.0861	1	295300	+		27586	24752	22589	22617	30858	30858					0.07245180025711306
LAGPGRLQP	9	Unmodified	_LAGPGRLQP_					0	0	0		ENST00000480356.1_1_1:95006521-95007279:-|nuORF	ENST00000480356.1_1_1:95006521-95007279:-|nuORF	ENST00000480356.1_1_1:95006521-95007279:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	455.24407958984375	2	454.769252	907.52395	0.30445	0.00013845	-0.89297	-0.0004061	-0.58853	-0.00026764	454.76871369711387	58.071	1.0541	54.726	54.393	55.447	-3.3449					46	20	3	0	0	0	0.027425	1	3848	3848		40.573	8.6178	1	283700			27587	12526	22590	22618	30859	30859					0.06648910854232781
LAGPGSRSLS	10	Unmodified	_LAGPGSRSLS_					0	0	0		ENSG00000138771|ENST00000296043|SHROOM3	ENSG00000138771|ENST00000296043|SHROOM3	ENSG00000138771|ENST00000296043|SHROOM3	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.7630615234375	2	472.761623	943.508694	0.81682	0.00038616	-1.1676	-0.000552	-0.35078	-0.00016584	472.7608951583114	64.219	0.63339	60.744	60.298	60.931	-3.475					31	12	4	0	0	0	0.40664	1	4574	4574		67.494	0.53175	1	1404000			27588	4728	22591	22619	30860	30860					0.03467999266388233
LAGPLQTPR	9	Unmodified	_LAGPLQTPR_					0	0	0		ENSG00000231274|ENST00000612221|SBK3	ENSG00000231274|ENST00000612221|SBK3	ENSG00000231274|ENST00000612221|SBK3	MULTI-MSMS	OvCa9_classI_Rep2	2	476.7831726074219	2	476.782359	951.550165	0.47987	0.00022879	-0.57998	-0.00027652	-0.10011	-4.7731E-05	476.7819652613016	43.145	1.2386	40.436	40.114	41.353	-2.7097					56	24	4	0	0	0	0.28934	3	2363	2358;2363;2395		64.207	7.9657	1	295300			27589	9287	22592	22620	30861;30862;30863	30862					0.07245180025699938
LAGPLQTPR	9	Unmodified	_LAGPLQTPR_					0	0	0		ENSG00000231274|ENST00000612221|SBK3	ENSG00000231274|ENST00000612221|SBK3	ENSG00000231274|ENST00000612221|SBK3	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.7821350097656	2	476.782359	951.550165	-0.71651	-0.00034162	0.34545	0.0001647	-0.37106	-0.00017692	476.78251062896163	43.464	1.7317	40.457	40.115	41.847	-3.0074					59	33	2	0	0	0	0.10363	2	2096	2074;2096		96.19	11.275	1	1543100			27590	9287	22592	22620	30864;30865	30865					0.07245180025699938
LAGPPPRPH	9	Unmodified	_LAGPPPRPH_					0	0	0		ENST00000524821.5_2_8:145752624-145753086:-|nuORF	ENST00000524821.5_2_8:145752624-145753086:-|nuORF	ENST00000524821.5_2_8:145752624-145753086:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	471.8081970214844	2	471.269419	940.524284	-0.26178	-0.00012337	4.3714	0.0020601	4.1097	0.0019368	471.27080153591317	67.092	0.74348	64.431	64.049	64.793	-2.661					32	14	3	0	0	0	0.027462	1	5268	5268		28.254	6.5519	1	32183			27591	13170	22593	22621	30866	30866					0.05164330574075393
LAGPTPAIAM	10	Unmodified	_LAGPTPAIAM_					0	0	0			REV__ENSG00000278803|ENST00000458091|PWWP4	REV__ENSG00000278803|ENST00000458091|PWWP4	MULTI-SECPEP	OvCa9_classI_Rep2	2	470.8124694824219	2	471.259871	940.505189	0.96515	0.00045484	3.8894	0.0018329	4.8545	0.0022877	471.26174317507883	65.885	1.2932	63.189	62.821	64.114	-2.6958					49	25	3	0	0	0	0.026822	1	5154	5154		30.504	0	1	134760	+		27592	23646	22594	22622	30867	30867					0.03255613168153104
LAGPWLGEV	9	Unmodified	_LAGPWLGEV_					0	0	0		ENST00000524048.1_1_7:27162808-27163667:+|nuORF;ENST00000521159.5_1_7:27162261-27164022:+|nuORF;ENST00000521687.5_1_7:27162261-27168026:+|nuORF;ENST00000517550.1_1_7:27161590-27163258:+|nuORF	ENST00000524048.1_1_7:27162808-27163667:+|nuORF	ENST00000524048.1_1_7:27162808-27163667:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.2808837890625	2	471.258185	940.501818	-0.7182	-0.00033846	-3.1849	-0.0015009	-3.9031	-0.0018393	471.2563102774961	49.966	0.87364	49.966	49.635	50.509	0					26	19	2	0	0	0	0.027462	1	3727	3727		8.2313	0	1	264080			27593	13057	22595	22623	30868	30868					0.029186863858058132
LAGQLLSDIL	10	Unmodified	_LAGQLLSDIL_					0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.7755737304688	2	521.810782	1041.60701	-0.66412	-0.00034654	4.0103	0.0020926	3.3462	0.0017461	522.3141769815725	74.579	1.011	71.349	70.952	71.963	-3.2308					27	20	2	0	0	0	0.026782	1	5855	5855		37.812	0	1	77985			27594	8850	22597	22624	30869	30869					0.0878718279154782
LAGRAFIK	8	Unmodified	_LAGRAFIK_					0	0	0			REV__tr|A0A553SJR9|A0A553SJR9_NIACIDipeptidasePepVOS=NialliacirculansOX=1397GN=pepVPE=4SV=1	REV__tr|A0A553SJR9|A0A553SJR9_NIACIDipeptidasePepVOS=NialliacirculansOX=1397GN=pepVPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	439.22808837890625	2	438.276712	874.538872	0.16648	7.2966E-05	2.122	0.00093004	2.2885	0.001003	438.2778611260103	50.167	0.3443	50.167	49.988	50.332	0					11	7	2	0	0	0	0.028476	1	3788	3788		18.324	0	1	83523	+		27595	30035	22598	22625	30870	30870					0.09658402722209303
LAGRAQHKGT	10	Unmodified	_LAGRAQHKGT_					0	0	0		ENSG00000162461|ENST00000294454|SLC25A34	ENSG00000162461|ENST00000294454|SLC25A34	ENSG00000162461|ENST00000294454|SLC25A34	MULTI-MSMS	OvCa9_classI_Rep3	3	519.7930297851562	2	519.793789	1037.57303	1.5307	0.00079564	-1.6022	-0.00083281	-0.07152	-3.7176E-05	519.7927708482009	121.53	4.9018	120.5	119.85	124.76	-1.0286					197	93	4	0	0	0	0.41408	1	9370	9370		66.429	2.222	1	827300			27596	6185	22599	22626	30871	30871					0.0557419914316597
LAGREVPLL	9	Unmodified	_LAGREVPLL_					0	0	0		ENST00000394805.7_1_5:138629377-138643017:+|nuORF	ENST00000394805.7_1_5:138629377-138643017:+|nuORF	ENST00000394805.7_1_5:138629377-138643017:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	484.7984924316406	2	484.300384	966.586216	-0.52477	-0.00025414	0.49358	0.00023904	-0.031184	-1.5103E-05	484.3003583756493	98.675	3.4546	97.782	95.694	99.149	-0.89305					112	69	3	0	0	0	0.027462	1	8747	8747		45.952	3.5558	1	150340			27597	11278	22600	22627	30872	30872					0.10158637202562204
LAGRVTRRG	9	Unmodified	_LAGRVTRRG_					0	0	0		ENST00000570276.5_1_15:75132809-75135659:-|nuORF	ENST00000570276.5_1_15:75132809-75135659:-|nuORF	ENST00000570276.5_1_15:75132809-75135659:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3243713378906	2	493.304324	984.594095	-0.016379	-8.0797E-06	0.096425	4.7567E-05	0.080046	3.9487E-05	493.3059168874623	79.439	0.46001	77.099	76.952	77.412	-2.3399					12	8	2	0	0	0	0.027455	1	4319	4319		42.396	0	1	11790			27598	13894	22601	22628	30873	30873					0.10118209242693865
LAGRWANEV	9	Unmodified	_LAGRWANEV_					0	0	0		ENST00000481918.1_1_1:213186656-213188829:-|nuORF	ENST00000481918.1_1_1:213186656-213188829:-|nuORF	ENST00000481918.1_1_1:213186656-213188829:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.81036376953125	2	508.269616	1014.52468	-0.36438	-0.0001852	1.0227	0.00051981	0.65833	0.00033461	508.26969564080497	55.903	0.61855	55.903	55.559	56.178	0					29	14	3	0	0	0	0.027462	1	4562	4562		31.955	0	1	465600			27599	12558	22602	22629	30874	30874					0.017997055032651588
LAGRYLSE	8	Unmodified	_LAGRYLSE_					0	0	0		ENST00000541836.5_1_16:15021147-15029115:+|nuORF	ENST00000541836.5_1_16:15021147-15029115:+|nuORF	ENST00000541836.5_1_16:15021147-15029115:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	454.2973937988281	2	454.745442	907.476331	2.7895	0.0012685	-0.16029	-7.2892E-05	2.6292	0.0011956	454.745083425326	75.659	0.2412	75.659	75.523	75.764	0					8	5	2	0	0	0	0.028476	1	7526	7526		51.335	1.8939	1	313040			27600	13469	22603	22630	30875	30875					0.01889211863374385
LAGSKGRI	8	Unmodified	_LAGSKGRI_					0	0	0		ENSG00000249853|ENST00000312719|HS3ST5	ENSG00000249853|ENST00000312719|HS3ST5	ENSG00000249853|ENST00000312719|HS3ST5	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.89434814453125	2	401.250695	800.486836	1.3177	0.00052874	-1.0134	-0.00040663	0.30434	0.00012212	401.25018768611295	60.579	0.29545	60.579	60.434	60.73	0					9	6	2	0	0	0	0.028476	1	5299	5299		17.365	0	1	141340			27601	9413	22604	22631	30876	30876					0.07861239308465429
LAGSLHPVPG	10	Unmodified	_LAGSLHPVPG_					0	0	0			REV__ENST00000260702.3_1_10:100008260-100008497:-|nuORF	REV__ENST00000260702.3_1_10:100008260-100008497:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.7551574707031	2	474.269084	946.523616	0.33425	0.00015852	-0.60353	-0.00028623	-0.26928	-0.00012771	474.269506241666	52.685	0.30717	52.685	52.566	52.873	0					10	6	2	0	0	0	0.026939	1	4133	4133		31.955	13.63	1	100790	+		27602	23932	22605	22632	30877	30877					0.048214911343848144
LAGSLLPKQGM	11	Unmodified	_LAGSLLPKQGM_					0	0	0			REV__ENST00000372648.9_1_9:131570248-131570605:+|nuORF	REV__ENST00000372648.9_1_9:131570248-131570605:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.3237915039062	2	557.818084	1113.62162	0.22695	0.0001266	3.4543	0.0019268	3.6812	0.0020534	557.8196909824145	106.04	1.1267	104.03	103.7	104.82	-2.0161					47	21	3	0	0	0	0.025457	1	9606	9606		36.447	1.2947	1	142810	+		27603	25008	22606	22633	30878	30878					0.06934931668070021
LAGSLLPKQGM	11	Unmodified	_LAGSLLPKQGM_					0	0	0			REV__ENST00000372648.9_1_9:131570248-131570605:+|nuORF	REV__ENST00000372648.9_1_9:131570248-131570605:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	557.818084	1113.62162	0.022096	1.2326E-05	5.0953	0.0028423	5.1174	0.0028546	557.8205693518994	104.71	0.98883	104.13	103.82	104.81	-0.57639	0.10845	0.00050901	NaN	36.447	48	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89152	+		27604	25008	22606	22633							0.06934931668070021
LAGSLLPKQGM	11	Unmodified	_LAGSLLPKQGM_					0	0	0			REV__ENST00000372648.9_1_9:131570248-131570605:+|nuORF	REV__ENST00000372648.9_1_9:131570248-131570605:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	557.818084	1113.62162	-0.0017845	-9.9542E-07	3.7583	0.0020965	3.7566	0.0020955	557.8199161435081	105.38	0.88434	104.03	103.83	104.72	-1.3482	0.0096824	-0.00098259	NaN	36.447	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136520	+		27605	25008	22606	22633							0.06934931668070021
LAGSMSLKAAL	11	Unmodified	_LAGSMSLKAAL_					0	0	0		ENSG00000151881|ENST00000397080|TMEM267	ENSG00000151881|ENST00000397080|TMEM267	ENSG00000151881|ENST00000397080|TMEM267	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.2471923828125	2	531.30481	1060.59507	-0.56209	-0.00029864	-2.5114	-0.0013343	-3.0735	-0.0016329	531.3035265258715	42.357	0.81316	42.357	41.94	42.753	0					39	18	3	0	0	0	0.025529	1	2684	2684		58.23	7.0372	1	356990			27606	5589	22607	22634	30879	30879					0.06719242776716783
LAGSVQDLL	9	Unmodified	_LAGSVQDLL_					0	0	0		ENSG00000120332|ENST00000239462|TNN;TNN|p.R111Qfs*8|1|0.05|ENSG00000120332|chr1:175077749-175077750|-/AAGTCTGCCTTGGTTCA|frameshift_variant	ENSG00000120332|ENST00000239462|TNN	ENSG00000120332|ENST00000239462|TNN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.7776184082031	2	458.260925	914.507297	-1.0239	-0.00046923	1.2643	0.00057938	0.24037	0.00011015	458.2613003640067	54.764	0.61642	51.516	51.285	51.901	-3.2474					19	11	2	0	0	0	0.027461	1	3388	3388		19.104	9.3979	1	100880			27607	3428	22608	22635	30880	30880					0.04662365177614447
LAGSVQDLL	9	Unmodified	_LAGSVQDLL_					0	0	0		ENSG00000120332|ENST00000239462|TNN;TNN|p.R111Qfs*8|1|0.05|ENSG00000120332|chr1:175077749-175077750|-/AAGTCTGCCTTGGTTCA|frameshift_variant	ENSG00000120332|ENST00000239462|TNN	ENSG00000120332|ENST00000239462|TNN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	458.260925	914.507297	-0.39244	-0.00017984	1.1312	0.00051839	0.73878	0.00033856	458.26139830969225	54.611	0.5985	51.797	51.473	52.072	-2.8139	0.14028	-9.0449E-05	NaN	19.104	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22430			27608	3428	22608	22635							0.04662365177614447
LAGTANPTD	9	Unmodified	_LAGTANPTD_					0	0	0		TENM3|p.V1731D|1|0.2|ENSG00000218336|chr4:182775041-182775041|T/A|missense_variant	TENM3|p.V1731D|1|0.2|ENSG00000218336|chr4:182775041-182775041|T/A|missense_variant	TENM3|p.V1731D|1|0.2|ENSG00000218336|chr4:182775041-182775041|T/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	430.2101135253906	2	430.211432	858.408311	1.3451	0.00057868	-2.9355	-0.0012629	-1.5904	-0.00068421	430.21006545642274	113.54	1.2833	112.47	112.15	113.43	-1.0753					58	24	4	0	0	0	0.38969	1	8354	8354		52.937	8.8199	1	196220			27609	32949	22609	22636	30881	30881					-0.026556577872838716
LAGTANPTD	9	Unmodified	_LAGTANPTD_					0	0	0		TENM3|p.V1731D|1|0.2|ENSG00000218336|chr4:182775041-182775041|T/A|missense_variant	TENM3|p.V1731D|1|0.2|ENSG00000218336|chr4:182775041-182775041|T/A|missense_variant	TENM3|p.V1731D|1|0.2|ENSG00000218336|chr4:182775041-182775041|T/A|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	430.211432	858.408311	0.24696	0.00010624	-1.8344	-0.00078916	-1.5874	-0.00068292	430.21050864723986	112.86	1.5303	112.73	112.23	113.76	-0.12174	0.15496	0.00052281	NaN	52.937	68	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116820			27610	32949	22609	22636							-0.026556577872838716
LAGTNDGLP	9	Unmodified	_LAGTNDGLP_					0	0	0			REV__nc|ENSG00000105639|P52333-2|JAK3	REV__nc|ENSG00000105639|P52333-2|JAK3	MULTI-MSMS	OvCa99_classI_Rep5	1	429.2215576171875	2	429.2218	856.429047	-1.288	-0.00055285	-2.6585	-0.0011411	-3.9465	-0.0016939	429.22048203947554	104.4	0.67741	104.4	104.19	104.87	0					35	15	3	0	0	0	0.24951	1	11696	11696		68.787	2.9837	1	2021500	+		27611	17741	22610	22637	30882	30882					-0.004910674076199939
LAGTVTPAILL	11	Unmodified	_LAGTVTPAILL_					0	0	0		ENST00000263026.9_1_16:22298140-22298332:+|nuORF	ENST00000263026.9_1_16:22298140-22298332:+|nuORF	ENST00000263026.9_1_16:22298140-22298332:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.2861328125	2	534.8368	1067.65905	1.2839	0.00068668	0.66338	0.0003548	1.9473	0.0010415	534.8372130146578	93.528	0.40921	93.528	93.305	93.714	0					13	9	2	0	0	0	0.025909	1	10129	10129		26.693	0	1	417210			27612	9905	22611	22638	30883	30883					0.12792346205310423
LAGVARIFNTR	11	Unmodified	_LAGVARIFNTR_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.20550537109375	3	406.57529	1216.70404	0.8232	0.00033469	-1.5609	-0.00063463	-0.73772	-0.00029994	406.57453578507113	35.341	0.18359	35.341	35.246	35.429	0					5	3	2	0	0	0	0.02538	1	1783	1783		21.032	0	1	21586			27613	13545	22612	22639	30884	30884					0.10435589791200073
LAGVGSFWLMT	11	Oxidation (M)	_LAGVGSFWLM(Oxidation (M))T_		LAGVGSFWLM(1)T		LAGVGSFWLM(42)T	0	0	1			REV__ENST00000496609.1_1_7:33945135-33977005:+|nuORF	REV__ENST00000496609.1_1_7:33945135-33977005:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	599.3054809570312	2	599.302267	1196.58998	1.0173	0.00060969	3.9485	0.0023663	4.9658	0.002976	599.3045242947921	114.98	0.79409	114.98	114.65	115.44	0					28	16	2	0	0	0	0.62497	1	13145	13145		42.396	8.4745	1	828650	+		27614	26765	22613	22640	30885	30885		597			-0.0004506108591613156
LAGVIFPE	8	Unmodified	_LAGVIFPE_					0	0	0			REV__ENSG00000113838|ENST00000338733|TBCCD1	REV__ENSG00000113838|ENST00000338733|TBCCD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	423.72784423828125	2	423.242004	844.469455	-1.0752	-0.00045507	-3.5928	-0.0015206	-4.668	-0.0019757	423.24045662801336	54.303	1.3826	51.055	50.825	52.207	-3.2474					41	26	2	0	0	0	0.028476	1	3386	3386		65.897	8.4448	1	195900	+		27615	18172	22614	22641	30886	30886					0.04099898982792638
LAGVIFPE	8	Unmodified	_LAGVIFPE_					0	0	0			REV__ENSG00000113838|ENST00000338733|TBCCD1	REV__ENSG00000113838|ENST00000338733|TBCCD1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	423.242004	844.469455	-1.0214	-0.0004323	-4.0258	-0.0017039	-5.0472	-0.0021362	423.2401933499991	54.114	0.69791	51.3	50.975	51.673	-2.8139	0.12246	-0.00026951	NaN	52.299	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28496	+		27616	18172	22614	22641							0.04099898982792638
LAGVLTLR	8	Unmodified	_LAGVLTLR_					0	0	0			REV__tr|A0A553SH92|A0A553SH92_NIACIProteintranslocasesubunitSecYOS=NialliacirculansOX=1397GN=secYPE=3SV=1	REV__tr|A0A553SH92|A0A553SH92_NIACIProteintranslocasesubunitSecYOS=NialliacirculansOX=1397GN=secYPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	421.7536315917969	2	421.776545	841.538538	0.12395	5.2279E-05	-0.54118	-0.00022826	-0.41723	-0.00017598	421.7761621119966	89.5	1.0422	86.925	86.608	87.65	-2.575					25	20	2	0	0	0	0.028476	1	7725	7725		7.1934	0.45781	1	30635	+		27617	29784	22615	22642	30887	30887					0.11142983002366691
LAGWARQLE	9	Unmodified	_LAGWARQLE_					0	0	0			REV__ENSG00000074356|ENST00000389005|NCBP3	REV__ENSG00000074356|ENST00000389005|NCBP3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.8192749023438	2	522.285266	1042.55598	0.31445	0.00016423	-4.3941	-0.002295	-4.0797	-0.0021307	522.7821006500529	68.399	0.39196	64.909	64.622	65.014	-3.4902					14	7	2	0	0	0	0.027462	1	5038	5038		37.159	0	1	16555	+		27618	16949	22616	22643	30888	30888					0.036402785373638835
LAGYFKGIQ	9	Unmodified	_LAGYFKGIQ_					0	0	0		nc|ENSG00000147454|Q9NYZ2-4|SLC25A37;ENSG00000147454|ENST00000519973|SLC25A37	nc|ENSG00000147454|Q9NYZ2-4|SLC25A37	nc|ENSG00000147454|Q9NYZ2-4|SLC25A37	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.8014831542969	2	498.779285	995.544017	-0.45397	-0.00022643	-4.1235	-0.0020567	-4.5775	-0.0022832	498.77670987255584	51.872	0.50502	48.699	48.372	48.877	-3.1734					12	9	2	0	0	0	0.027425	1	3073	3073		50.025	0	1	43705			27619	5358	22617	22644	30889	30889					0.046066617941846744
LAHAHGLPQ	9	Unmodified	_LAHAHGLPQ_					0	0	0		ENSG00000162460|ENST00000375782|TMEM82	ENSG00000162460|ENST00000375782|TMEM82	ENSG00000162460|ENST00000375782|TMEM82	MULTI-SECPEP	OvCa9_classI_Rep2	2	472.77459716796875	2	472.259051	942.503549	-0.28079	-0.0001326	0.89576	0.00042303	0.61497	0.00029042	472.2591771186561	69.9	0.69861	67.33	67.015	67.714	-2.5707					26	13	3	0	0	0	0.027456	1	5550	5550		26.796	17.09	1	70810			27620	6184	22618	22645	30890	30890					0.02999740194422884
LAHAHGLPQ	9	Unmodified	_LAHAHGLPQ_					0	0	0		ENSG00000162460|ENST00000375782|TMEM82	ENSG00000162460|ENST00000375782|TMEM82	ENSG00000162460|ENST00000375782|TMEM82	MULTI-MATCH	OvCa9_classI_Rep3	3		2	472.259051	942.503549	1.1284	0.00053289	-0.79239	-0.00037421	0.336	0.00015868	472.2585552965524	69.93	0.89742	67.211	66.956	67.853	-2.7196	-0.16637	-0.0003054	NaN	12.959	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40980			27621	6184	22618	22645							0.02999740194422884
LAHALRFPAF	10	Unmodified	_LAHALRFPAF_					0	0	0			REV__ENSG00000164690|ENST00000297261|SHH	REV__ENSG00000164690|ENST00000297261|SHH	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.2919311523438	2	571.827101	1141.63965	1.7569	0.0010046	-2.4006	-0.0013727	-0.64373	-0.0003681	571.8263086234011	122.48	0.22926	122.48	122.4	122.63	0					6	4	2	0	0	0	0.026669	1	14114	14114		23.042	0	1	69433	+		27622	21012	22619	22646	30891	30891					0.0744943470506314
LAHAPPQT	8	Unmodified	_LAHAPPQT_					0	0	0		ENSG00000173065|ENST00000581407|FAM222B	REV__ENSG00000167548|ENST00000301067|KMT2D	REV__ENSG00000167548|ENST00000301067|KMT2D	MULTI-SECPEP	OvCa99_classI_Rep5	1	416.85498046875	2	417.727052	833.439552	0.65717	0.00027452	0.09686	4.0461E-05	0.75404	0.00031498	417.7269044938267	62.724	0.55773	62.724	62.501	63.058	0					18	13	2	0	0	0	0.028476	1	5579	5579		12.207	0	1	216010	+		27623	21287	22620	22647	30892	30892					0.016169600374723814
LAHAVYASL	9	Unmodified	_LAHAVYASL_					0	0	0		tr|A0A7D6W392|A0A7D6W392_9CLOTArginaseOS=ClostridiumintestinaleOX=36845GN=rocFPE=3SV=1	tr|A0A7D6W392|A0A7D6W392_9CLOTArginaseOS=ClostridiumintestinaleOX=36845GN=rocFPE=3SV=1	tr|A0A7D6W392|A0A7D6W392_9CLOTArginaseOS=ClostridiumintestinaleOX=36845GN=rocFPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.2959289550781	2	472.763635	943.512717	2.2323	0.0010553	2.201	0.0010405	4.4332	0.0020959	472.76399821803346	92.723	0.37643	92.723	92.635	93.011	0					11	8	2	0	0	0	0.027462	1	10026	10026		24.203	0	1	418510			27624	35447	22621	22648	30893	30893					0.03870088760083945
LAHGIDEPVP	10	Unmodified	_LAHGIDEPVP_					0	0	0			REV__ENSG00000184144|ENST00000331830|CNTN2	REV__ENSG00000184144|ENST00000331830|CNTN2	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.32373046875	2	524.277106	1046.53966	0.67498	0.00035388	-0.30426	-0.00015951	0.37073	0.00019436	524.2766052322319	131.8	0.68037	131.57	131.3	131.98	-0.22696					19	13	2	0	0	0	0.027021	1	12961	12961		29.15	1.2673	1	23954	+		27625	22405	22622	22649	30894	30894					0.01825152580613576
LAHLGSTL	8	Unmodified	_LAHLGSTL_					0	0	0		ENSG00000167595|ENST00000646935|PROSER3	ENSG00000167595|ENST00000646935|PROSER3	ENSG00000167595|ENST00000646935|PROSER3	MULTI-SECPEP	OvCa99_classI_Rep5	1	406.7200012207031	2	406.237253	810.459953	0.45726	0.00018575	-0.13577	-5.5156E-05	0.32148	0.0001306	406.23710766971845	69.74	0.57207	69.74	69.433	70.005	0					23	13	3	0	0	0	0.028476	1	6646	6646		44.531	9.3304	1	605540			27626	6810	22623	22650	30895	30895					0.047141306972775965
LAHPKVEVK	9	Unmodified	_LAHPKVEVK_					0	0	0		tr|A0A7D6VSQ2|A0A7D6VSQ2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17640PE=4SV=1	tr|A0A7D6VSQ2|A0A7D6VSQ2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17640PE=4SV=1	tr|A0A7D6VSQ2|A0A7D6VSQ2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17640PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.8133239746094	2	510.813659	1019.61277	-2.1881	-0.0011177	1.9319	0.00098683	-0.25623	-0.00013089	510.814522374635	148.32	0.8961	146.88	146.63	147.52	-1.435					43	17	3	0	0	0	0.67509	1	14639	14639		23.042	4.7181	1	141170			27627	35047	22624	22651	30896	30896					0.10374326093904074
LAHRGHGVR	9	Unmodified	_LAHRGHGVR_					0	0	0		ENST00000392401.3_1_6:132713415-132722602:-|nuORF	ENST00000392401.3_1_6:132713415-132722602:-|nuORF	ENST00000392401.3_1_6:132713415-132722602:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.79034423828125	2	501.788841	1001.56313	0.18165	9.1152E-05	2.1776	0.0010927	2.3593	0.0011839	501.7897348150944	32.473	0.94865	29.777	29.403	30.352	-2.6954					46	23	3	0	0	0	0.67509	1	795	795		23.042	0	1	37577			27628	11223	22625	22652	30897	30897					0.06241055928478545
LAHRPPVN	8	Unmodified	_LAHRPPVN_					0	0	0			REV__nc|ENSG00000100722|Q6PJT7-8|ZC3H14	REV__nc|ENSG00000100722|Q6PJT7-8|ZC3H14	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.7449645996094	2	452.261594	902.508634	0.60432	0.00027331	-2.4135	-0.0010915	-1.8092	-0.00081824	452.26035380915886	58.234	1.3558	54.889	54.546	55.901	-3.3449					46	26	2	0	0	0	0.028476	1	3833	3833		31.955	5.2619	1	126420	+		27629	17446	22626	22653	30898	30898					0.05348044057041079
LAHRPPVN	8	Unmodified	_LAHRPPVN_					0	0	0			REV__nc|ENSG00000100722|Q6PJT7-8|ZC3H14	REV__nc|ENSG00000100722|Q6PJT7-8|ZC3H14	MULTI-MATCH	OvCa9_classI_Rep2	2		2	452.261594	902.508634	1.5035	0.00067996	-2.9974	-0.0013556	-1.4939	-0.00067564	452.259924637063	57.854	1.0538	55.062	54.724	55.777	-2.792	0.08649	-0.00044907	NaN	17.365	30	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25063	+		27630	17446	22626	22653							0.05348044057041079
LAHSGSDL	8	Unmodified	_LAHSGSDL_					0	0	0		nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1;ENST00000414990.2_3_7:143295168-143301929:+|nuORF;ENST00000392900.3_1_7:143551228-143582358:-|nuORF	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MULTI-MSMS	OvCa99_classI_Rep5	1	400.2008056640625	2	400.200867	798.387182	0.97897	0.00039179	-0.56271	-0.0002252	0.41626	0.00016659	400.2005328661946	38.463	1.0802	38.463	38.207	39.287	0					42	23	3	0	0	0	0.33245	1	2183	2183		101.21	35.314	1	1561600			27631	8817	22627	22654	30899	30899					-0.02007623096142197
LAHSVSLL	8	Unmodified	_LAHSVSLL_					0	0	0			REV__ENSG00000127580|ENST00000293883|WDR24	REV__ENSG00000127580|ENST00000293883|WDR24	MULTI-MSMS	OvCa9_classI_Rep2	2	420.2525939941406	2	420.252903	838.491253	0.41101	0.00017273	-0.075014	-3.1525E-05	0.336	0.0001412	420.2527341495351	108.37	2.424	108.15	107.78	110.2	-0.22498					119	48	4	0	0	0	0.63104	1	10152	10152		57.453	5.1535	1	477420	+		27632	18821	22628	22655	30900	30900					0.06554703731376321
LAHVGPRL	8	Unmodified	_LAHVGPRL_					0	0	0		ENSG00000181625|ENST00000330181|SLX1B;ENSG00000132207|ENST00000251303|SLX1A;ENST00000565219.1_1_16:29466524-29469442:+|nuORF;SLX1B-FOXRED1|1|fusion	ENSG00000181625|ENST00000330181|SLX1B	ENSG00000181625|ENST00000330181|SLX1B	MULTI-MSMS	OvCa99_classI_Rep5	1	431.768310546875	2	431.766512	861.518471	0.25404	0.00010969	0.15143	6.5381E-05	0.40547	0.00017507	431.766480835126	52.943	1.0388	52.943	52.653	53.692	0					58	23	5	0	0	0	0.40641	2	4186	4165;4186		86.935	32.17	1	3690800			27633	4118	22629	22656	30901;30902	30902					0.08217232062418134
LAIAITALYS	10	Unmodified	_LAIAITALYS_					0	0	0		ENSG00000116329|ENST00000234961|OPRD1	ENSG00000116329|ENST00000234961|OPRD1	ENSG00000116329|ENST00000234961|OPRD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.3074340820312	2	518.307875	1034.6012	-0.75506	-0.00039136	0.35935	0.00018625	-0.39571	-0.0002051	518.3079776494031	127.8	1.0346	126.37	126.19	127.22	-1.4357					44	19	3	0	0	0	0.35697	1	12218	12218		73.975	9.7675	1	109700			27634	3174	22630	22657	30903	30903					0.08528084279896575
LAIAITALYS	10	Unmodified	_LAIAITALYS_					0	0	0		ENSG00000116329|ENST00000234961|OPRD1	ENSG00000116329|ENST00000234961|OPRD1	ENSG00000116329|ENST00000234961|OPRD1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	518.307875	1034.6012	1.026	0.00053177	-1.3804	-0.00071546	-0.3544	-0.00018369	518.3070188282194	126.63	1.0861	126.39	126.1	127.18	-0.2359	0.057203	-0.00067106	NaN	73.975	51	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123820			27635	3174	22630	22657							0.08528084279896575
LAIAITALYS	10	Unmodified	_LAIAITALYS_					0	0	0		ENSG00000116329|ENST00000234961|OPRD1	ENSG00000116329|ENST00000234961|OPRD1	ENSG00000116329|ENST00000234961|OPRD1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	518.307875	1034.6012	1.4862	0.00077032	-1.6342	-0.00084702	-0.14799	-7.6703E-05	518.3070833751897	127.67	0.86983	126.58	126.25	127.12	-1.0933	0.24257	-0.0009342	NaN	73.975	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35730			27636	3174	22630	22657							0.08528084279896575
LAIDTSNLVL	10	Unmodified	_LAIDTSNLVL_					0	0	0		tr|A0A553SGT2|A0A553SGT2_NIACItRNA(Adenosine(37)-N6)-threonylcarbamoyltransferasecomplexdimerizationsubunittype1TsaBOS=NialliacirculansOX=1397GN=tsaBPE=4SV=1	tr|A0A553SGT2|A0A553SGT2_NIACItRNA(Adenosine(37)-N6)-threonylcarbamoyltransferasecomplexdimerizationsubunittype1TsaBOS=NialliacirculansOX=1397GN=tsaBPE=4SV=1	tr|A0A553SGT2|A0A553SGT2_NIACItRNA(Adenosine(37)-N6)-threonylcarbamoyltransferasecomplexdimerizationsubunittype1TsaBOS=NialliacirculansOX=1397GN=tsaBPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	529.8096313476562	2	529.808239	1057.60193	-0.50017	-0.00026499	0.17125	9.0729E-05	-0.32892	-0.00017427	529.8081448658007	81.247	2.3145	78.925	78.44	80.755	-2.3226					139	45	5	0	0	0	0.45822	2	4483	4483;4488		60.118	3.0823	1	2361100			27637	33194	22631	22658	30904;30905	30904					0.0754287892893899
LAIEDQLIK	9	Unmodified	_LAIEDQLIK_					0	0	0			REV__tr|A0A553SIZ8|A0A553SIZ8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15810PE=4SV=1	REV__tr|A0A553SIZ8|A0A553SIZ8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15810PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	521.8109741210938	2	521.810782	1041.60701	0.84043	0.00043855	1.8894	0.00098592	2.7298	0.0014245	521.8116732875379	90.77	0.39903	90.77	90.577	90.976	0					17	9	2	0	0	0	0.21231	1	9746	9746		74.255	4.6274	1	1543000	+		27638	29950	22632	22659	30906	30906					0.0878718279154782
LAIGLPFQI	9	Unmodified	_LAIGLPFQI_					0	0	0		nc|ENSG00000123297|P43897-4|TSFM	nc|ENSG00000123297|P43897-4|TSFM	nc|ENSG00000123297|P43897-4|TSFM	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.28125	2	486.299853	970.585153	-0.086296	-4.1966E-05	-3.1572	-0.0015353	-3.2435	-0.0015773	486.29736330108744	93.822	0.68068	92.722	92.329	93.01	-1.0995					23	12	2	0	0	0	0.027441	1	8339	8339		42.474	14.592	1	60384			27639	14994	22633	22660	30907	30907					0.09868422833653767
LAIGNMGF	8	Unmodified	_LAIGNMGF_					0	0	0			REV__tr|A0A553SF94|A0A553SF94_NIACIBcr/CflAfamilyeffluxtransporterOS=NialliacirculansOX=1397GN=CEQ21_08445PE=3SV=1	REV__tr|A0A553SF94|A0A553SF94_NIACIBcr/CflAfamilyeffluxtransporterOS=NialliacirculansOX=1397GN=CEQ21_08445PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	411.7156066894531	2	411.712556	821.41056	1.1912	0.00049042	1.9074	0.00078532	3.0986	0.0012757	411.7137330187845	57.711	1.2157	57.711	57.48	58.696	0					69	28	4	0	0	0	0.67106	1	4889	4889		49.211	2.4444	1	5962200	+		27640	29551	22634	22661	30908	30908					-0.00728900583169434
LAIHLIFLS	9	Unmodified	_LAIHLIFLS_					0	0	0		ENST00000465348.5_1_6:31610527-31611963:-|nuORF	ENST00000465348.5_1_6:31610527-31611963:-|nuORF	ENST00000465348.5_1_6:31610527-31611963:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.3003540039062	2	513.820953	1025.62735	2.2473	0.0011547	-3.8833	-0.0019953	-1.636	-0.00084064	513.8188735009146	80.576	0.97214	80.576	80.234	81.206	0					51	22	3	0	0	0	0.027449	1	8339	8339		40.573	16.053	1	3955000			27641	12271	22635	22662	30909	30909					0.11556398242032628
LAIHTGLEA	9	Unmodified	_LAIHTGLEA_					0	0	0			REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4	REV__nc|ENSG00000253953|Q9UN71-2|PCDHGB4	MULTI-MSMS	OvCa9_classI_Rep3	3	462.7619934082031	2	462.761092	923.507631	0.13025	6.0273E-05	-0.745	-0.00034476	-0.61476	-0.00028448	462.7607352709524	79.909	2.6877	77.569	77.257	79.945	-2.3399					136	52	5	0	0	0	0.13154	1	4375	4375		88.643	3.2834	1	3296900	+		27642	23511	22636	22663	30910	30910					0.04281784897466423
LAIIEKEH	8	Unmodified	_LAIIEKEH_					0	0	0			REV__ENSG00000137831|ENST00000322954|UACA	REV__ENSG00000137831|ENST00000322954|UACA	MULTI-MSMS	OvCa9_classI_Rep2	2	476.77606201171875	2	476.776742	951.538931	0.48207	0.00022984	2.7493	0.0013108	3.2314	0.0015406	476.776256085318	113.03	1.6288	112.91	112.52	114.15	-0.12174					105	32	5	0	0	0	0.52992	1	10737	10737		74.517	0	1	498690	+		27643	19486	22637	22664	30911	30911					0.06122357931565148
LAIIVLVLDN	10	Unmodified	_LAIIVLVLDN_					0	0	0			REV__ENST00000493965.5_1_9:39078319-39086841:-|nuORF	REV__ENST00000493965.5_1_9:39078319-39086841:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.8201293945312	2	541.844625	1081.6747	-0.17402	-9.429E-05	3.7274	0.0020197	3.5534	0.0019254	541.8465227007098	75.509	0.15671	73.099	73.02	73.177	-2.4106					4	2	2	0	0	0	0.026871	1	3822	3822		29.15	0	1	9909.6	+		27644	26717	22638	22665	30912	30912					0.13712632722376839
LAIKQLSFT	9	Unmodified	_LAIKQLSFT_					0	0	0			REV__tr|A0A553SGU5|A0A553SGU5_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11580PE=4SV=1	REV__tr|A0A553SGU5|A0A553SGU5_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11580PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.7658386230469	2	510.808042	1019.60153	0.22552	0.0001152	0.58379	0.00029821	0.80932	0.0004134	510.80778655386354	62.438	0.41828	62.438	62.122	62.541	0					10	9	2	0	0	0	0.027462	1	5539	5539		29.15	7.4472	1	131670	+		27645	29738	22639	22666	30913	30913					0.09251503999769284
LAILDRPE	8	Unmodified	_LAILDRPE_					0	0	0		ENSG00000186862|ENST00000619208|PDZD7;ENST00000474125.6_1_10:102770610-102771988:-|nuORF	ENSG00000186862|ENST00000619208|PDZD7	ENSG00000186862|ENST00000619208|PDZD7	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.2979431152344	2	463.768917	925.523281	2.7744	0.0012867	0.19709	9.1406E-05	2.9715	0.0013781	463.76883976785757	102.35	0.34209	102.35	102.12	102.47	0					12	7	2	0	0	0	0.028476	1	11408	11408		73.975	0	1	168150			27646	8367	22640	22667	30914	30914					0.05754071414514783
LAIMPIPGTL	10	Unmodified	_LAIMPIPGTL_					0	0	0		nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6;nc|ENSG00000158987|Q8TEU7-6|RAPGEF6;ENST00000514179.5_1_5:130808265-130808373:-|nuORF	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.789794921875	2	513.306821	1024.59909	0.12794	6.5672E-05	2.9954	0.0015376	3.1233	0.0016032	513.3080559757124	58.156	0.46206	58.156	57.941	58.403	0					17	9	2	0	0	0	0.026871	1	4948	4948		29.15	10.825	1	329430			27647	5982	22641	22668	30915	30915					0.08777332270460647
LAIMVKHL	8	Unmodified	_LAIMVKHL_					0	0	0		tr|A0A553SMN5|A0A553SMN5_NIACIDUF475domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22865PE=3SV=1	tr|A0A553SMN5|A0A553SMN5_NIACIDUF475domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22865PE=3SV=1	tr|A0A553SMN5|A0A553SMN5_NIACIDUF475domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22865PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.79034423828125	2	462.788598	923.562644	0.27277	0.00012624	3.9679	0.0018363	4.2407	0.0019625	462.7903124837854	33.565	1.4882	30.777	30.259	31.747	-2.7881					68	29	3	0	0	0	0.60486	1	898	898		62.978	8.2138	1	162630			27648	33855	22642	22669	30916	30916					0.0978050016439056
LAIPTDVLVD	10	Unmodified	_LAIPTDVLVD_					0	0	0			REV__nc|ENSG00000169851|O60245|PCDH7	REV__nc|ENSG00000169851|O60245|PCDH7	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.7439575195312	2	528.30279	1054.59103	2.3847	0.0012599	0.097106	5.1302E-05	2.4818	0.0013112	528.8032863328172	106.36	0.26435	106.36	106.18	106.45	0					7	5	2	0	0	0	0.026665	1	11956	11956		60.972	20.399	1	47769	+		27649	21488	22643	22670	30917	30917					0.06591476554672226
LAIQGSAPLL	10	Unmodified	_LAIQGSAPLL_					0	0	0			REV__ENSG00000178896|ENST00000316052|EXOSC4	REV__ENSG00000178896|ENST00000316052|EXOSC4	MULTI-SECPEP	OvCa9_classI_Rep3	3	491.8039855957031	2	491.800217	981.585882	-0.68331	-0.00033605	-2.1374	-0.0010512	-2.8208	-0.0013872	491.79895222159075	98.093	0.46171	96.333	96.11	96.572	-1.7595					17	8	3	0	0	0	0.026493	1	6536	6536		64.207	14.766	1	116030	+		27650	22085	22644	22671	30918	30918					0.09435217482700864
LAIQGSAPLL	10	Unmodified	_LAIQGSAPLL_					0	0	0			REV__ENSG00000178896|ENST00000316052|EXOSC4	REV__ENSG00000178896|ENST00000316052|EXOSC4	MULTI-MATCH	OvCa99_classI_Rep5	1		2	491.800217	981.585882	2.5738	0.0012658	-0.47768	-0.00023492	2.0961	0.0010309	491.7999047407929	96.412	0.4157	96.412	96.168	96.584	0	0.079707	0.00097076	NaN	75.043	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	314740	+		27651	22085	22644	22671							0.09435217482700864
LAIQKPADL	9	Unmodified	_LAIQKPADL_					0	0	0		nc|ENSG00000115839|Q15042-3|RAB3GAP1;nc|ENSG00000115839|Q15042-4|RAB3GAP1;ENSG00000115839|ENST00000264158|RAB3GAP1	nc|ENSG00000115839|Q15042-3|RAB3GAP1	nc|ENSG00000115839|Q15042-3|RAB3GAP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	485.2655029296875	2	484.792392	967.570232	0.40564	0.00019665	-0.94246	-0.0004569	-0.53682	-0.00026025	484.7916940398976	70.94	1.1851	68.369	67.714	68.899	-2.5707					34	22	2	0	0	0	0.027462	1	5747	5747		16.473	4.2663	1	45584			27652	14978	22645	22672	30919	30919					0.08514930965645817
LAIRIPLLI	9	Unmodified	_LAIRIPLLI_					0	0	0		nc|ENSG00000116984|Q99707-2|MTR;ENSG00000116984|ENST00000366577|MTR	nc|ENSG00000116984|Q99707-2|MTR	nc|ENSG00000116984|Q99707-2|MTR	MULTI-MSMS	OvCa99_classI_Rep5	1	511.3619079589844	2	511.360245	1020.70594	0.93894	0.00048014	-0.011725	-5.9958E-06	0.92722	0.00047414	511.3600251706519	151.21	0.66031	151.21	150.94	151.6	0					27	12	3	0	0	0	0.61208	1	17703	17703		30.504	6.3009	1	90701			27653	3224	22646	22673	30920	30920					0.1964125054713577
LAIRNPLR	8	Unmodified	_LAIRNPLR_					0	0	0			REV__tr|A0A7D6ZYG3|A0A7D6ZYG3_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16300PE=4SV=1	REV__tr|A0A7D6ZYG3|A0A7D6ZYG3_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16300PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.8056640625	2	476.806168	951.597784	-0.54019	-0.00025756	-0.3732	-0.00017794	-0.91338	-0.00043551	476.80595009891266	41.29	1.8569	38.309	37.918	39.775	-2.9804					79	35	3	0	0	0	0.61758	1	1837	1837		60.294	0	1	1153600	+		27654	32370	22647	22674	30921	30921					0.12004879016546965
LAIRSAFLVF	10	Unmodified	_LAIRSAFLVF_					0	0	0		tr|A0A553SJP0|A0A553SJP0_NIACICytochromedubiquinoloxidasesubunitIIOS=NialliacirculansOX=1397GN=CEQ21_17325PE=3SV=1	tr|A0A553SJP0|A0A553SJP0_NIACICytochromedubiquinoloxidasesubunitIIOS=NialliacirculansOX=1397GN=CEQ21_17325PE=3SV=1	tr|A0A553SJP0|A0A553SJP0_NIACICytochromedubiquinoloxidasesubunitIIOS=NialliacirculansOX=1397GN=CEQ21_17325PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	568.8458862304688	2	568.844959	1135.67537	1.1361	0.00064626	1.8132	0.0010315	2.9493	0.0016777	568.845786397459	122.98	2.0826	121.95	121	123.08	-1.034					125	39	4	0	0	0	0.46756	1	9460	9460		58.782	16.386	1	474050			27655	33523	22648	22675	30922	30922					0.11295472162078113
LAISIFMCNSV	11	Unmodified	_LAISIFMCNSV_					0	0	0			REV__ENST00000528511.6_2_11:71595487-71639632:-|nuORF	REV__ENST00000528511.6_2_11:71595487-71639632:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	599.3036499023438	2	599.303952	1196.59335	1.2016	0.00072011	-1.4934	-0.00089502	-0.29186	-0.00017491	599.3027980261922	115.74	1.1842	114.7	114.4	115.59	-1.0414					49	23	4	0	0	0	0.56391	1	8611	8611		47.96	1.9873	1	169750	+		27656	27171	22649	22676	30923	30923					0.002918656964538968
LAITKIGHNEI	11	Unmodified	_LAITKIGHNEI_					0	0	0			REV__tr|A0A7D6VY97|A0A7D6VY97_9CLOTtetrahydrofolatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14960PE=3SV=1	REV__tr|A0A7D6VY97|A0A7D6VY97_9CLOTtetrahydrofolatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14960PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	404.57098388671875	3	403.571434	1207.69247	0.34941	0.00014101	-0.0132	-5.3272E-06	0.33621	0.00013568	403.57101282686125	50.362	1.2329	47.22	46.922	48.155	-3.1416					56	23	3	0	0	0	0.025746	1	2879	2879		17.167	0	1	122180	+		27657	31815	22650	22677	30924	30924					0.09693347977213307
LAITLKKGK	9	Unmodified	_LAITLKKGK_					0	0	0			REV__tr|A0A553SP65|A0A553SP65_NIACIStk1familyPASTAdomain-containingSer/ThrkinaseOS=NialliacirculansOX=1397GN=pknBPE=4SV=1	REV__tr|A0A553SP65|A0A553SP65_NIACIStk1familyPASTAdomain-containingSer/ThrkinaseOS=NialliacirculansOX=1397GN=pknBPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.3052978515625	2	486.334227	970.653902	-2.0874	-0.0010152	-1.614	-0.00078492	-3.7013	-0.0018001	486.33318029851966	126.51	0.3469	125.09	125.02	125.36	-1.4143					10	6	2	0	0	0	0.027456	1	12076	12076		57.811	19.005	1	13062	+		27658	30501	22651	22678	30925	30925					0.1674008713338253
LAIVYITY	8	Unmodified	_LAIVYITY_					0	0	0			REV__ENSG00000115414|ENST00000354785|FN1	REV__ENSG00000115414|ENST00000354785|FN1	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.8066711425781	2	478.278586	954.54262	-1.4289	-0.0006834	-0.94233	-0.0004507	-2.3712	-0.0011341	478.2779717608097	68.038	0.93632	65.377	65.041	65.977	-2.661					29	18	2	0	0	0	0.028476	1	5317	5317		46.766	0	1	33063	+		27659	18242	22652	22679	30926	30926					0.06353027705404202
LAIYRLPTL	9	Unmodified	_LAIYRLPTL_					0	0	0		ENSG00000198876|ENST00000361264|DCAF12	ENSG00000198876|ENST00000361264|DCAF12	ENSG00000198876|ENST00000361264|DCAF12	MULTI-SECPEP	OvCa9_classI_Rep3	3	530.3116455078125	2	530.331685	1058.64882	0.41234	0.00021868	-0.4504	-0.00023886	-0.038065	-2.0187E-05	530.3320938087481	105.5	0.31157	104.15	103.99	104.3	-1.3482					7	5	2	0	0	0	0.027342	1	7402	7402		113.41	25.657	1	18807			27660	8896	22653	22680	30927	30927					0.12183783270756976
LAKAAKEV	8	Unmodified	_LAKAAKEV_					0	0	0		tr|A0A7D6VUU4|A0A7D6VUU4_9CLOTProbablecytosolaminopeptidaseOS=ClostridiumintestinaleOX=36845GN=pepAPE=3SV=1	tr|A0A7D6VUU4|A0A7D6VUU4_9CLOTProbablecytosolaminopeptidaseOS=ClostridiumintestinaleOX=36845GN=pepAPE=3SV=1	tr|A0A7D6VUU4|A0A7D6VUU4_9CLOTProbablecytosolaminopeptidaseOS=ClostridiumintestinaleOX=36845GN=pepAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	415.260986328125	2	415.260728	828.506903	-0.98554	-0.00040926	1.1241	0.00046678	0.13852	5.7522E-05	415.2610696855443	34.499	1.0395	31.789	31.513	32.553	-2.7097					31	20	3	0	0	0	0.7224	1	1326	1326		38.806	0	1	69011			27661	35200	22654	22681	30928	30928					0.08578990248417995
LAKAPVLKL	9	Unmodified	_LAKAPVLKL_					0	0	0			REV__tr|A0A7D6VR18|A0A7D6VR18_9CLOTPyruvate:ferredoxinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=nifJPE=3SV=1	REV__tr|A0A7D6VR18|A0A7D6VR18_9CLOTPyruvate:ferredoxinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=nifJPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	477.27496337890625	2	476.83132	951.648088	-0.14862	-7.0865E-05	0.20457	9.7543E-05	0.055949	2.6678E-05	476.8312314265202	77.179	1.3755	74.808	74.505	75.881	-2.3715					56	26	3	0	0	0	0.027462	1	4141	4141		16.473	0	1	175630	+		27662	31379	22655	22682	30929	30929					0.17032988621690492
LAKDHSPDL	9	Unmodified	_LAKDHSPDL_					0	0	0		ENSG00000182220|ENST00000636580|ATP6AP2;ENST00000417716.1_1_1:197191903-197192119:+|nuORF;nc|ENSG00000182220|O75787-2|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2;nc|ENSG00000182220|O75787-2|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	MULTI-MSMS	OvCa99_classI_Rep5	1	498.2612609863281	2	498.261456	994.50836	-0.51484	-0.00025652	0.27277	0.00013591	-0.24207	-0.00012061	498.2614714925055	40.502	0.49735	40.502	40.34	40.838	0					22	10	3	0	0	0	0.045281	1	2466	2466		122.18	17.429	1	551980			27663	7982;15208	22656	22683	30930	30930					0.010885795465128467
LAKEHLKH	8	Unmodified	_LAKEHLKH_					0	0	0			REV__tr|A0A553SJ01|A0A553SJ01_NIACIAlanine--glyoxylateaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15840PE=3SV=1	REV__tr|A0A553SJ01|A0A553SJ01_NIACIAlanine--glyoxylateaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15840PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	487.7912902832031	2	488.290351	974.566149	-0.51248	-0.00025024	2.1519	0.0010507	1.6394	0.0008005	488.29105031727767	132.51	1.3401	131.38	130.59	131.93	-1.1249					46	26	3	0	0	0	0.028476	1	10560	10560		19.36	1.0356	1	29247	+		27664	29951	22657	22684	30931	30931					0.07784886262618329
LAKELKAK	8	Unmodified	_LAKELKAK_					0	0	0			REV__tr|A0A7D6ZZL6|A0A7D6ZZL6_9CLOTTypeIIrestrictionendonucleaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20850PE=4SV=1	REV__tr|A0A7D6ZZL6|A0A7D6ZZL6_9CLOTTypeIIrestrictionendonucleaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20850PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.79742431640625	2	450.797478	899.580402	-0.31024	-0.00013986	0.048929	2.2057E-05	-0.26131	-0.0001178	450.79747179139	45.66	1.9722	42.621	42.334	44.306	-3.0385					97	37	4	0	0	0	0.61436	1	2372	2372		60.972	0	1	1556900	+		27665	32413	22658	22685	30932	30932					0.12659538690900263
LAKFYELNTN	10	Unmodified	_LAKFYELNTN_					0	0	0		tr|A0A7D7ABR8|A0A7D7ABR8_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16345PE=4SV=1	tr|A0A7D7ABR8|A0A7D7ABR8_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16345PE=4SV=1	tr|A0A7D7ABR8|A0A7D7ABR8_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16345PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.818359375	2	606.816596	1211.61864	1.4365	0.00087168	-1.7555	-0.0010653	-0.31902	-0.00019359	606.8153601007599	97.372	1.9587	94.993	94.114	96.072	-2.3786					97	37	5	0	0	0	0.49558	1	8645	8645		54.776	0.053964	1	1168400			27666	36218	22659	22686	30933	30933					0.021293798149145005
LAKHKWLM	8	Oxidation (M)	_LAKHKWLM(Oxidation (M))_		LAKHKWLM(1)		LAKHKWLM(45)	0	0	1			REV__ENSG00000120662|ENST00000379480|MTRF1	REV__ENSG00000120662|ENST00000379480|MTRF1	MULTI-MSMS	OvCa9_classI_Rep2	2	521.7996215820312	2	521.796955	1041.57936	0.7122	0.00037162	3.5382	0.0018462	4.2504	0.0022178	521.798133945385	124.62	1.1845	124.39	124.03	125.21	-0.23193					47	23	3	0	0	0	0.69415	1	12131	12131		44.531	12.576	1	135240	+		27667	18506	22660	22687	30934	30934		426			0.06023001050334642
LAKIINWAE	9	Unmodified	_LAKIINWAE_					0	0	0			REV__nc|ENSG00000172349|Q14005-3|IL16	REV__nc|ENSG00000172349|Q14005-3|IL16	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.3040771484375	2	529.305667	1056.59678	-1.1667	-0.00061756	-3.4246	-0.0018127	-4.5913	-0.0024302	529.3038359069677	51.534	1.3624	48.36	48.072	49.435	-3.1734					81	26	4	0	0	0	0.27001	1	3034	3034		66.429	2.222	1	450830	+		27668	21691	22661	22688	30935	30935					0.07074619856962272
LAKKSTALTGQ	11	Unmodified	_LAKKSTALTGQ_					0	0	0			REV__ENSG00000196460|ENST00000428343|RFX8	REV__ENSG00000196460|ENST00000428343|RFX8	MULTI-MSMS	OvCa9_classI_Rep2	2	559.33349609375	2	559.332413	1116.65027	0.022736	1.2717E-05	1.9367	0.0010832	1.9594	0.001096	559.3338875168262	104.92	4.6529	104.34	102.39	107.04	-0.57639					237	93	5	0	0	0	0.10496	8	9753	9714;9718;9724;9729;9735;9747;9753;9759		96.034	16.234	1	7580000	+		27669	22832	22662	22689	30936;30937;30938;30939;30940;30941;30942;30943	30942					0.09661372568825755
LAKKSTALTGQ	11	Unmodified	_LAKKSTALTGQ_					0	0	0			REV__ENSG00000196460|ENST00000428343|RFX8	REV__ENSG00000196460|ENST00000428343|RFX8	MULTI-MSMS	OvCa9_classI_Rep3	3	559.3333129882812	2	559.332413	1116.65027	0.059927	3.3519E-05	2.2701	0.0012697	2.33	0.0013032	559.3337743770333	105.67	2.6036	104.33	103.89	106.49	-1.3482					139	50	4	0	0	0	0.10496	5	7432	7410;7415;7432;7456;7480		96.034	28.54	1	6929000	+		27670	22832	22662	22689	30944;30945;30946;30947;30948	30946					0.09661372568825755
LAKKSTALTGQ	11	Unmodified	_LAKKSTALTGQ_					0	0	0			REV__ENSG00000196460|ENST00000428343|RFX8	REV__ENSG00000196460|ENST00000428343|RFX8	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.3359985351562	2	559.332413	1116.65027	0.1153	6.449E-05	2.4074	0.0013466	2.5227	0.001411	559.3338934185311	106.4	2.878	104.38	103.6	106.47	-2.0161					138	56	4	0	0	0	0.15616	2	9669	9669;9680		85.862	10.819	1	9929600	+		27671	22832	22662	22689	30949;30950	30949					0.09661372568825755
LAKLQTNPK	9	Unmodified	_LAKLQTNPK_					0	0	0		ENSG00000174125|ENST00000308979|TLR1	ENSG00000174125|ENST00000308979|TLR1	ENSG00000174125|ENST00000308979|TLR1	MULTI-MSMS	OvCa9_classI_Rep2	2	506.80975341796875	2	506.811116	1011.60768	-1.1259	-0.00057063	0.32757	0.00016601	-0.79835	-0.00040461	506.81130069607957	99.678	3.3722	98.848	98.219	101.59	-0.83051					157	66	4	0	0	0	0.13482	2	9105	9099;9105		87.754	6.3214	1	2351400			27672	7438	22663	22690	30951;30952	30952					0.10234022231270501
LAKLQTNPK	9	Unmodified	_LAKLQTNPK_					0	0	0		ENSG00000174125|ENST00000308979|TLR1	ENSG00000174125|ENST00000308979|TLR1	ENSG00000174125|ENST00000308979|TLR1	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.8119201660156	2	506.811116	1011.60768	-0.91945	-0.00046599	-1.1845	-0.0006003	-2.1039	-0.0010663	506.81048510289196	101.22	3.3613	98.954	98.29	101.65	-2.2665					172	65	4	0	0	0	0.14998	1	9116	9116		84.916	21.609	1	2669900			27673	7438	22663	22690	30953	30953					0.10234022231270501
LAKMNKNH	8	Unmodified	_LAKMNKNH_					0	0	0			REV__ENSG00000081386|ENST00000223428|ZNF510	REV__ENSG00000081386|ENST00000223428|ZNF510	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.76861572265625	2	478.260736	954.50692	2.3065	0.0011031	3.4365	0.0016436	5.7431	0.0027467	478.2622433518231	84.916	0.28624	84.916	84.8	85.087	0					10	6	2	0	0	0	0.028476	1	8912	8912		33.516	9.9929	1	159610	+		27674	17072	22664	22691	30954	30954					0.027846669767768617
LAKMRQISL	9	Oxidation (M)	_LAKM(Oxidation (M))RQISL_		LAKM(1)RQISL		LAKM(140)RQISL	0	0	1			REV__nc|ENSG00000040275|Q96EA4-2|SPDL1	REV__nc|ENSG00000040275|Q96EA4-2|SPDL1	MULTI-MSMS	OvCa9_classI_Rep3	3	538.3160400390625	2	538.318251	1074.62195	1.2512	0.00067356	-4.3889	-0.0023626	-3.1377	-0.0016891	538.3155795894885	71.752	2.0773	69.15	68.782	70.859	-2.6023					139	41	5	0	0	0	0.026923	2	3379	3366;3379		138.83	14.231	1	1426400	+		27675	16627	22665	22692	30955;30956	30956		395			0.08762351387917988
LAKNLELAD	9	Unmodified	_LAKNLELAD_					0	0	0			REV__ENSG00000164751|ENST00000357039|PEX2	REV__ENSG00000164751|ENST00000357039|PEX2	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.3184814453125	2	493.779482	985.544411	-0.47455	-0.00023432	-0.055449	-2.7379E-05	-0.53	-0.0002617	493.7795747260754	103.16	0.78902	102.47	102.08	102.87	-0.68459					22	15	2	0	0	0	0.027462	1	9551	9551		27.882	1.1893	1	20505	+		27676	21018	22666	22693	30957	30957					0.051060367233731085
LAKNLLQL	8	Unmodified	_LAKNLLQL_					0	0	0			REV__ENST00000484611.7_1_X:200851-207455:+|nuORF	REV__ENST00000484611.7_1_X:200851-207455:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.76715087890625	2	456.797478	911.580402	0.99	0.00045223	0.9498	0.00043387	1.9398	0.0008861	456.79857773444263	37.496	0.39857	34.603	34.392	34.791	-2.8925					10	7	2	0	0	0	0.028476	1	1375	1375		52.299	0	1	17712	+		27677	22289	22667	22694	30958	30958					0.1210753869090695
LAKNPVSKQ	9	Unmodified	_LAKNPVSKQ_					0	0	0			REV__ANKRD30A|p.K1183Sfs*12|1|0.04|ENSG00000148513|chr10:37219257-37219258|-/GTCATTTG|frameshift_variant	REV__ANKRD30A|p.K1183Sfs*12|1|0.04|ENSG00000148513|chr10:37219257-37219258|-/GTCATTTG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.27520751953125	2	492.795466	983.57638	-1.0205	-0.00050289	0.54095	0.00026658	-0.47953	-0.00023631	492.7957447181235	76.414	1.9183	74.042	73.367	75.285	-2.3715					95	36	4	0	0	0	0.027441	1	3932	3932		45.952	15.448	1	719090	+		27678	15634	22668	22695	30959	30959					0.08393449197183145
LAKNRKRL	8	Unmodified	_LAKNRKRL_					0	0	0			REV__ENSG00000091138|ENST00000340010|SLC26A3	REV__ENSG00000091138|ENST00000340010|SLC26A3	MULTI-MSMS	OvCa99_classI_Rep5	1	499.8338623046875	2	499.832717	997.650882	0.12928	6.4617E-05	-0.51935	-0.00025959	-0.39007	-0.00019497	499.8323311232228	57.74	1.0913	57.74	57.522	58.613	0					53	25	3	0	0	0	0.69415	1	4874	4874		44.531	3.7529	1	1086900	+		27679	17244	22669	22696	30960	30960					0.1519625679922001
LAKRALHPK	9	Unmodified	_LAKRALHPK_					0	0	0			REV__ENST00000521696.1_1_8:100025101-100025236:-|nuORF	REV__ENST00000521696.1_1_8:100025101-100025236:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.3246459960938	2	517.335093	1032.65563	0.90718	0.00046932	3.2459	0.0016792	4.1531	0.0021485	517.3370088593945	104.64	0.46617	103.2	103.12	103.59	-1.4347					17	8	4	0	0	0	0.027456	1	7342	7342		47.916	9.1095	1	32087	+		27680	27073	22670	22697	30961	30961					0.14061140941953454
LAKRKPPS	8	Unmodified	_LAKRKPPS_					0	0	0			REV__ENST00000527257.1_1_11:124972301-124972424:-|nuORF	REV__ENST00000527257.1_1_11:124972301-124972424:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	448.7881164550781	2	448.787444	895.560336	0.54524	0.0002447	-0.86697	-0.00038908	-0.32172	-0.00014439	448.78693781374767	47.503	1.5749	44.395	44.082	45.657	-3.1077					80	30	4	0	0	0	0.50674	2	2566	2566;2578		76.847	10.949	1	680440	+		27681	27150	22671	22698	30962;30963	30962					0.10837787750949701
LAKRVGMDD	9	Unmodified	_LAKRVGMDD_					0	0	0		tr|A0A553SL19|A0A553SL19_NIACIStageVsporulationproteinABOS=NialliacirculansOX=1397GN=CEQ21_19800PE=4SV=1	tr|A0A553SL19|A0A553SL19_NIACIStageVsporulationproteinABOS=NialliacirculansOX=1397GN=CEQ21_19800PE=4SV=1	tr|A0A553SL19|A0A553SL19_NIACIStageVsporulationproteinABOS=NialliacirculansOX=1397GN=CEQ21_19800PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.76318359375	2	502.763309	1003.51206	-0.9446	-0.00047491	-0.52187	-0.00026238	-1.4665	-0.00073729	502.7627934318169	52.483	1.8154	49.275	48.792	50.607	-3.208					66	35	3	0	0	0	0.068524	1	3151	3151		108.09	4.0739	1	2006800			27682	33676	22672	22699	30964	30964					0.01044926048734851
LAKYRMRNV	9	Unmodified	_LAKYRMRNV_					0	0	0		nc|ENSG00000011021|P51797-6|CLCN6;ENSG00000011021|ENST00000346436|CLCN6;nc|ENSG00000011021|P51797-5|CLCN6	nc|ENSG00000011021|P51797-6|CLCN6	nc|ENSG00000011021|P51797-6|CLCN6	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.8510131835938	2	575.829317	1149.64408	-1.0909	-0.00062816	0.10938	6.2983E-05	-0.9815	-0.00056518	575.8294310774701	89.001	0.24404	86.87	86.75	86.994	-2.1309					7	4	2	0	0	0	0.027462	1	5452	5452		45.952	5.1738	1	34515			27683	954	22673	22700	30965	30965					0.07524575856336924
LALALARGVE	10	Unmodified	_LALALARGVE_					0	0	0		ENST00000514507.1_1_5:663600-666098:+|nuORF	ENST00000514507.1_1_5:663600-666098:+|nuORF	ENST00000514507.1_1_5:663600-666098:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	506.81170654296875	2	506.811116	1011.60768	-0.19535	-9.9005E-05	-0.46138	-0.00023383	-0.65673	-0.00033284	506.81088140623655	72.437	2.0408	69.929	69.537	71.578	-2.5071					74	38	2	0	0	0	0.11378	1	5867	5867		110.12	5.3733	1	1427900			27684	13031	22674	22701	30966	30966					0.10234022231293238
LALALARGVE	10	Unmodified	_LALALARGVE_					0	0	0		ENST00000514507.1_1_5:663600-666098:+|nuORF	ENST00000514507.1_1_5:663600-666098:+|nuORF	ENST00000514507.1_1_5:663600-666098:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	506.8120422363281	2	506.811116	1011.60768	-0.44114	-0.00022357	0.073781	3.7393E-05	-0.36736	-0.00018618	506.8111165678339	72.595	2.3799	69.993	69.521	71.901	-2.6023					124	47	4	0	0	0	0.20801	3	3474	3474;3500;3507		93.195	10.445	1	1583400			27685	13031	22674	22701	30967;30968;30969	30967					0.10234022231293238
LALALTASPR	10	Unmodified	_LALALTASPR_					0	0	0		ENST00000569706.5_1_16:718312-718747:+|nuORF	ENST00000569706.5_1_16:718312-718747:+|nuORF	ENST00000569706.5_1_16:718312-718747:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	506.81146240234375	2	506.811116	1011.60768	-0.44114	-0.00022357	0.073781	3.7393E-05	-0.36736	-0.00018618	506.8111165678339	72.595	2.3799	69.993	69.521	71.901	-2.6023					124	47	4	0	0	0	0.11378	1	3481	3481		110.12	5.3733	1	1583400			27686	13885	22675	22702	30970	30970					0.1023402223128187
LALALTASPR	10	Unmodified	_LALALTASPR_					0	0	0		ENST00000569706.5_1_16:718312-718747:+|nuORF	ENST00000569706.5_1_16:718312-718747:+|nuORF	ENST00000569706.5_1_16:718312-718747:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.81256103515625	2	506.811116	1011.60768	-1.0201	-0.00051702	-0.14225	-7.2094E-05	-1.1624	-0.00058911	506.81103376209654	73.738	1.9166	70.341	69.93	71.847	-3.3961					71	39	2	0	0	0	0.22663	2	5745	5745;5764		90.37	5.4482	1	1698900			27687	13885	22675	22702	30971;30972	30971					0.1023402223128187
LALANHLRT	9	Unmodified	_LALANHLRT_					0	0	0			REV__ENSG00000113790|ENST00000231887|EHHADH	REV__ENSG00000113790|ENST00000231887|EHHADH	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.80078125	2	504.801083	1007.58761	-0.51627	-0.00026061	0.016581	8.3702E-06	-0.49969	-0.00025224	504.8009963645628	39.298	1.0939	36.371	36.146	37.24	-2.9264					65	21	4	0	0	0	0.44568	1	1593	1593		47.657	5.2612	1	680690	+		27688	18171	22676	22703	30973	30973					0.08412271291331308
LALAPRLL	8	Unmodified	_LALAPRLL_					0	0	0		ENST00000482974.1_1_3:50614485-50617422:+|nuORF;ENST00000448997.5_1_3:50608680-50617422:+|nuORF;ENSG00000114735|ENST00000232854|HEMK1	ENST00000482974.1_1_3:50614485-50617422:+|nuORF	ENST00000482974.1_1_3:50614485-50617422:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	433.79437255859375	2	433.794738	865.574923	1.1641	0.000505	-1.5519	-0.00067321	-0.38776	-0.00016821	433.79394637933103	113.56	1.8167	112.11	111.75	113.57	-1.4461					87	35	4	0	0	0	0.61706	1	10544	10544		60.404	0	1	638440			27689	3035	22677	22704	30974	30974					0.13675859899092302
LALARGVEAL	10	Unmodified	_LALARGVEAL_					0	0	0		ENST00000514507.1_1_5:663600-666098:+|nuORF	ENST00000514507.1_1_5:663600-666098:+|nuORF	ENST00000514507.1_1_5:663600-666098:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	506.8120422363281	2	506.811116	1011.60768	-0.19535	-9.9005E-05	-0.46138	-0.00023383	-0.65673	-0.00033284	506.81088140623655	72.437	2.0408	69.929	69.537	71.578	-2.5071					74	38	2	0	0	0	0.13777	1	5886	5886		104.06	5.4274	1	1427900			27690	13031	22678	22705	30975	30975					0.10234022231293238
LALARGVEALL	11	Unmodified	_LALARGVEALL_					0	0	0		ENST00000514507.1_1_5:663600-666098:+|nuORF	ENST00000514507.1_1_5:663600-666098:+|nuORF	ENST00000514507.1_1_5:663600-666098:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	563.3533935546875	2	563.353148	1124.69174	-1.0854	-0.00061147	0.27756	0.00015637	-0.80785	-0.00045511	563.3535121729102	117.2	1.8826	116.17	115.84	117.73	-1.0324					63	37	2	0	0	0	0.26031	2	8825	8794;8825		71.877	5.4482	1	2467900			27691	13031	22679	22706	30976;30977	30977					0.1343855332820567
LALAVIQL	8	Unmodified	_LALAVIQL_					0	0	0		ENSG00000253598|ENST00000518568|SLC10A5	ENSG00000253598|ENST00000518568|SLC10A5	ENSG00000253598|ENST00000518568|SLC10A5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	420.2593688964844	2	420.781296	839.54804	-0.52528	-0.00022103	0.53205	0.00022387	0.0067606	2.8447E-06	420.78138973342027	74.919	1.259	71.689	71.434	72.693	-3.2308					53	25	3	0	0	0	0.028476	1	5867	5867		29.842	0	1	315280			27692	9434	22680	22707	30978	30978					0.12184751287907147
LALAVIQL	8	Unmodified	_LALAVIQL_					0	0	0		ENSG00000253598|ENST00000518568|SLC10A5	ENSG00000253598|ENST00000518568|SLC10A5	ENSG00000253598|ENST00000518568|SLC10A5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	420.781296	839.54804	-0.096286	-4.0516E-05	0.19373	8.1516E-05	0.097439	4.1001E-05	420.7812764610942	73.892	1.7771	71.844	71.196	72.973	-2.0482	0.077576	-6.0069E-05	NaN	46.766	69	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125510			27693	9434	22680	22707							0.12184751287907147
LALAWSLAL	9	Unmodified	_LALAWSLAL_					0	0	0			REV__ENSG00000181656|ENST00000315033|GPR88	REV__ENSG00000181656|ENST00000315033|GPR88	MULTI-MSMS	OvCa9_classI_Rep2	2	479.2896423339844	2	479.292028	956.569503	-1.152	-0.00055214	-2.7735	-0.0013293	-3.9255	-0.0018815	479.2905830575166	116.71	1.0385	116.58	116.27	117.31	-0.12869					45	20	3	0	0	0	0.30002	1	11178	11178		62.978	2.0065	1	230600	+		27694	22243	22681	22708	30979	30979					0.0894813631659872
LALCDHLA	8	Unmodified	_LALCDHLA_					0	0	0			REV__sp|P16727|UL84_HCMVAProteinUL84OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL84PE=1SV=1	REV__sp|P16727|UL84_HCMVAProteinUL84OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL84PE=1SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	428.2232971191406	2	428.223288	854.432024	2.1294	0.00091187	-2.0334	-0.00087077	0.095985	4.1103E-05	428.2222618775492	62.473	1.7234	59.439	58.937	60.66	-3.0339					58	35	3	0	0	0	0.72134	1	2260	2260		39.021	1.8624	1	42700	+		27695	29390	22682	22709	30980	30980					-0.0010151555446782368
LALCHLGIF	9	Unmodified	_LALCHLGIF_					0	0	0			REV__ATRIP|p.Q432L|1|0.17|ENSG00000164053|chr3:48460349-48460349|A/T|missense_variant	REV__ATRIP|p.Q432L|1|0.17|ENSG00000164053|chr3:48460349-48460349|A/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3045654296875	2	493.778231	985.541908	-0.36491	-0.00018018	2.694	0.0013302	2.3291	0.00115	493.7795854897177	114.68	0.98713	113.63	113.35	114.34	-1.055					34	19	2	0	0	0	0.02744	1	8552	8552		60.404	25.203	1	32688	+		27696	15683	22683	22710	30981	30981					0.04855909784726009
LALDILPPI	9	Unmodified	_LALDILPPI_					0	0	0			REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9	REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	482.755126953125	2	482.807511	963.600469	-0.11304	-5.4576E-05	-3.5206	-0.0016998	-3.6336	-0.0017543	482.8057937475916	57.712	0.45862	54.367	54.189	54.647	-3.3449					9	8	2	0	0	0	0.027462	1	3765	3765		35.201	0	1	18963	+		27697	16315	22684	22711	30982	30982					0.1172128963086152
LALDKCSLS	9	Unmodified	_LALDKCSLS_					0	0	0			REV__ENSG00000171763|ENST00000305560|SPATA5L1	REV__ENSG00000171763|ENST00000305560|SPATA5L1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	474.256591796875	2	475.254785	948.495018	0.68254	0.00032438	1.1679	0.00055503	1.8504	0.00087941	475.2541073973633	61.448	0.90884	57.99	57.567	58.475	-3.4577					55	18	5	0	0	0	0.027449	1	4247	4247		31.955	0	1	126770	+		27698	21642	22685	22712	30983	30983					0.018710054429334377
LALDPKLPA	9	Unmodified	_LALDPKLPA_					0	0	0			REV__nc|ENSG00000134262|Q9Y6B7-2|AP4B1	REV__nc|ENSG00000134262|Q9Y6B7-2|AP4B1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	469.2771911621094	2	469.289485	936.564418	0.5484	0.00025736	1.0189	0.00047818	1.5673	0.00073553	469.2908289717038	78.582	0.18523	75.831	75.714	75.899	-2.7514					5	3	2	0	0	0	0.027462	1	6321	6321		47.916	0	1	10384	+		27699	28862	22686	22713	30984	30984					0.09359832453981198
LALDPVVVE	9	Unmodified	_LALDPVVVE_					0	0	0			REV__ENST00000417185.6_1_3:38049266-38049721:-|nuORF	REV__ENST00000417185.6_1_3:38049266-38049721:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	477.7771911621094	2	477.778951	953.543348	0.30924	0.00014775	-3.8089	-0.0018198	-3.4997	-0.0016721	477.7771636832581	43.542	2.3879	40.832	40.509	42.897	-2.7097					104	47	3	0	0	0	0.53957	1	2484	2484		38.806	0	1	3363800	+		27700	22630	22687	22714	30985	30985					0.06471822354478718
LALEIYWL	8	Unmodified	_LALEIYWL_					0	0	0			REV__nc|ENSG00000146842|Q96SK2-2|TMEM209	REV__nc|ENSG00000146842|Q96SK2-2|TMEM209	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.2708740234375	2	510.791861	1019.56917	1.853	0.00094651	-2.9588	-0.0015113	-1.1058	-0.00056483	510.79000929852015	133.56	0.51184	133.56	133.35	133.86	0					20	10	2	0	0	0	0.028476	1	15539	15539		39.021	14.819	1	94102	+		27701	20031	22688	22715	30986	30986					0.060167165967413894
LALEIYWL	8	Unmodified	_LALEIYWL_					0	0	0			REV__nc|ENSG00000146842|Q96SK2-2|TMEM209	REV__nc|ENSG00000146842|Q96SK2-2|TMEM209	MULTI-MATCH	OvCa9_classI_Rep2	2		2	510.791861	1019.56917	0.047369	2.4196E-05	-4.1926	-0.0021415	-4.1452	-0.0021173	510.78958348748273	133.94	0.88322	133.72	133.46	134.34	-0.22696	0.058629	0.00050778	NaN	39.021	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27561	+		27702	20031	22688	22715							0.060167165967413894
LALELRLP	8	Unmodified	_LALELRLP_					0	0	0			REV__ENST00000423414.5_1_7:130630482-130792495:-|nuORF	REV__ENST00000423414.5_1_7:130630482-130792495:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	462.7989807128906	2	462.797478	923.580402	2.6424	0.0012229	-0.73163	-0.0003386	1.9107	0.00088428	462.7973451408314	94.317	0.68121	94.317	94.051	94.732	0					43	15	5	0	0	0	0.45246	1	10259	10259		82.305	8.3303	1	1863800	+		27703	25631	22689	22716	30987	30987					0.11555538690890899
LALETNALS	9	Unmodified	_LALETNALS_					0	0	0		tr|A0A553SGT0|A0A553SGT0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_11430PE=4SV=1	tr|A0A553SGT0|A0A553SGT0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_11430PE=4SV=1	tr|A0A553SGT0|A0A553SGT0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_11430PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.27667236328125	2	466.258382	930.502212	-0.39204	-0.00018279	0.35134	0.00016381	-0.0407	-1.8977E-05	466.2585263189215	74.304	1.3842	71.073	70.531	71.915	-3.2308					51	28	3	0	0	0	0.027072	1	5801	5801		79.713	13.283	1	360940			27704	33193	22690	22717	30988	30988					0.034180613149942474
LALETNALS	9	Unmodified	_LALETNALS_					0	0	0		tr|A0A553SGT0|A0A553SGT0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_11430PE=4SV=1	tr|A0A553SGT0|A0A553SGT0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_11430PE=4SV=1	tr|A0A553SGT0|A0A553SGT0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_11430PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	466.258382	930.502212	0.14709	6.8582E-05	0.10798	5.0347E-05	0.25507	0.00011893	466.25840363538725	70.906	0.53954	70.906	70.528	71.068	0	-0.064955	-0.00025232	NaN	79.713	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	359060			27705	33193	22690	22717							0.034180613149942474
LALEVQARL	9	Unmodified	_LALEVQARL_					0	0	0		ENST00000546536.5_1_14:105957646-105963882:+|nuORF;nc|ENSG00000185347|Q86SX3-5|TEDC1;nc|ENSG00000185347|Q86SX3-3|TEDC1;nc|ENSG00000185347|Q86SX3-2|TEDC1;nc|ENSG00000185347|Q86SX3-6|TEDC1;ENSG00000185347|ENST00000392523|TEDC1	ENST00000546536.5_1_14:105957646-105963882:+|nuORF	ENST00000546536.5_1_14:105957646-105963882:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	506.811279296875	2	506.811116	1011.60768	-1.285	-0.00065125	-0.29635	-0.00015019	-1.5813	-0.00080144	506.8109472666925	100.58	3.0909	98.975	98.659	101.75	-1.6053					152	59	4	0	0	0	0.1804	1	6862	6862		79.713	0	1	2966100			27706	13536	22691	22718	30989	30989					0.10234022231270501
LALEWTVLM	9	Unmodified	_LALEWTVLM_					0	0	0			REV__ENST00000443213.5_1_2:38977282-38978406:-|nuORF	REV__ENST00000443213.5_1_2:38977282-38978406:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.2792358398438	2	538.296453	1074.57835	1.2333	0.0006639	-2.7174	-0.0014627	-1.484	-0.00079885	538.2953795380856	138.81	0.2381	138.81	138.69	138.93	0					8	4	2	0	0	0	0.027462	1	16197	16197		35.201	24.335	1	31534	+		27707	25864	22692	22719	30990	30990					0.04404741890743935
LALFLKRP	8	Unmodified	_LALFLKRP_					0	0	0		nc|ENSG00000173638|P41440-3|SLC19A1;nc|ENSG00000173638|P41440-2|SLC19A1;ENSG00000173638|ENST00000311124|SLC19A1	nc|ENSG00000173638|P41440-3|SLC19A1	nc|ENSG00000173638|P41440-3|SLC19A1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.2896728515625	2	479.315838	956.617122	-0.93101	-0.00044625	-0.93593	-0.0004486	-1.8669	-0.00089485	479.3152558835459	43.233	0.2625	40.226	40.01	40.273	-3.0074					5	4	2	0	0	0	0.028476	1	2048	2048		26.796	0	1	6976.2			27708	7401	22693	22720	30991	30991					0.13707835307468486
LALFLPVSV	9	Unmodified	_LALFLPVSV_					0	0	0		ENST00000481999.1_1_17:7813558-7814900:+|nuORF	ENST00000481999.1_1_17:7813558-7814900:+|nuORF	ENST00000481999.1_1_17:7813558-7814900:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.75042724609375	2	479.802229	957.589904	-1.4459	-0.00069376	-2.8652	-0.0013747	-4.3111	-0.0020685	479.80078774770294	49.019	0.47249	45.877	45.623	46.095	-3.1416					12	8	2	0	0	0	0.027449	1	2755	2755		50.025	0	1	16223			27709	12561	22694	22721	30992	30992					0.10941306976428677
LALFPGVAL	9	Unmodified	_LALFPGVAL_					0	0	0		ENSG00000167004|ENST00000300289|PDIA3;ENST00000469684.1_1_15:44038662-44048907:+|nuORF	ENSG00000167004|ENST00000300289|PDIA3	ENSG00000167004|ENST00000300289|PDIA3	MULTI-MSMS	OvCa99_classI_Rep5	1	450.7823181152344	2	450.781296	899.54804	0.79993	0.0003606	-0.51895	-0.00023393	0.28099	0.00012666	450.780903197218	161.79	0.71451	161.79	161.51	162.23	0					30	13	3	0	0	0	0.42921	2	18978	18956;18978		49.211	6.7363	1	223400			27710	6746	22695	22722	30993;30994	30994					0.09424751287883737
LALFTYVK	8	Unmodified	_LALFTYVK_					0	0	0		nc|ENSG00000105792|A5D8W1-2|CFAP69;nc|ENSG00000105792|A5D8W1-5|CFAP69;ENSG00000105792|ENST00000389297|CFAP69;ENST00000451029.5_1_7:89905415-89916830:+|nuORF;ENST00000475031.5_1_7:89901258-89916830:+|nuORF;CFAP69|p.A899Gfs*2|1|0.08|ENSG00000105792|chr7:90310105-90310127|CTGCCCGATTAGTAGGAGGACCT/-|frameshift_variant	nc|ENSG00000105792|A5D8W1-2|CFAP69	nc|ENSG00000105792|A5D8W1-2|CFAP69	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.2996826171875	2	477.786579	953.558604	-1.4012	-0.00066946	-3.7213	-0.001778	-5.1225	-0.0024475	477.7845349608538	51.798	0.59536	48.985	48.7	49.295	-2.8129					18	11	2	0	0	0	0.028476	1	3450	3450		26.796	3.7594	1	29987			27711	2500	22696	22723	30995	30995					0.07996733942320589
LALFVGPEGTG	11	Unmodified	_LALFVGPEGTG_					0	0	0			REV__nc|ENSG00000119139|Q9UDY2-5|TJP2	REV__nc|ENSG00000119139|Q9UDY2-5|TJP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8115844726562	2	530.787307	1059.56006	1.3377	0.00071004	3.1502	0.0016721	4.4879	0.0023821	530.7885444331104	113.88	0.8859	113.88	113.45	114.33	0					27	20	2	0	0	0	0.025792	1	12936	12936		10.265	0	1	97288	+		27712	28814	22697	22724	30996	30996					0.03266323240427482
LALFVLPKP	9	Unmodified	_LALFVLPKP_					0	0	0		nc|ENSG00000162086|Q96N20|ZNF75A;ENSG00000162086|ENST00000669516|ZNF75A	nc|ENSG00000162086|Q96N20|ZNF75A	nc|ENSG00000162086|Q96N20|ZNF75A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.8014831542969	2	499.325871	996.637189	-0.44927	-0.00022433	1.4732	0.00073562	1.024	0.00051129	499.32647219445346	51.925	0.15216	48.751	48.624	48.776	-3.1734					4	2	2	0	0	0	0.027462	1	3073	3073		18.324	0	1	13736			27713	6156	22698	22725	30997	30997					0.13873586247405
LALGAVKNIS	10	Unmodified	_LALGAVKNIS_					0	0	0		ITGA9|p.V741Gfs*12|1|0.08|ENSG00000144668|chr3:37736969-37736970|-/G|frameshift_variant;ITGA9|p.T742Lfs*28|1|0.06|ENSG00000144668|chr3:37736971-37736972|-/GTTGCAAATATTAGACCATTGCC|frameshift_variant;ENSG00000144668|ENST00000264741|ITGA9;ENST00000461533.1_1_3:37725371-37774349:+|nuORF	ITGA9|p.V741Gfs*12|1|0.08|ENSG00000144668|chr3:37736969-37736970|-/G|frameshift_variant	ITGA9|p.V741Gfs*12|1|0.08|ENSG00000144668|chr3:37736969-37736970|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.7809143066406	2	493.305667	984.596781	0.33804	0.00016675	-3.1437	-0.0015508	-2.8057	-0.0013841	493.30504486212743	47.646	0.75742	44.538	44.03	44.787	-3.1077					22	14	3	0	0	0	0.026994	1	2603	2603		19.104	0	1	42969			27714	5171	22699	22726	30998	30998					0.10386619857001733
LALGKATHMP	10	Unmodified	_LALGKATHMP_					0	0	0			REV__ENSG00000066027|ENST00000261461|PPP2R5A	REV__ENSG00000066027|ENST00000261461|PPP2R5A	MULTI-MSMS	OvCa9_classI_Rep3	3	519.7932739257812	2	519.791869	1037.56919	1.5307	0.00079564	2.0914	0.0010871	3.6221	0.0018827	519.7927708482009	121.53	4.9018	120.5	119.85	124.76	-1.0286					197	93	4	0	0	0	0.49558	1	9378	9378		54.776	12.38	1	827300	+		27715	16806	22700	22727	30999	30999					0.0519039332509692
LALGVPCL	8	Carbamidomethyl (C)	_LALGVPC(Carbamidomethyl (C))L_	LALGVPC(1)L		LALGVPC(44)L		0	1	0		ENST00000466436.5_3_X:149999750-150067053:-|nuORF	ENST00000466436.5_3_X:149999750-150067053:-|nuORF	ENST00000466436.5_3_X:149999750-150067053:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	421.7437744140625	2	421.743857	841.47316	0.41227	0.00017387	-3.7404	-0.0015775	-3.3281	-0.0014036	421.74209254671	71.774	0.82588	71.774	71.548	72.374	0					36	19	3	0	0	0	0.69862	1	6967	6967		43.626	6.5976	1	1690000			27716	12290	22701	22728	31000	31000	141				0.046082454850193244
LALHLARKR	9	Unmodified	_LALHLARKR_					0	0	0		ALS2|p.G883A|1|0.57|ENSG00000003393|chr2:201729116-201729116|C/G|missense_variant	ALS2|p.G883A|1|0.57|ENSG00000003393|chr2:201729116-201729116|C/G|missense_variant	ALS2|p.G883A|1|0.57|ENSG00000003393|chr2:201729116-201729116|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	539.3540649414062	2	539.353817	1076.69308	2.2939	0.0012372	-2.3996	-0.0012943	-0.10574	-5.7029E-05	539.3523735364151	63.128	1.3441	60.094	59.756	61.1	-3.0339					58	26	3	0	0	0	0.71234	1	2374	2374		13.775	0.81615	1	102560			27717	62	22702	22729	31001	31001					0.15780232207589506
LALHVKFL	8	Unmodified	_LALHVKFL_					0	0	0			REV__ENST00000332408.8_1_15:49127111-49135710:-|nuORF	REV__ENST00000332408.8_1_15:49127111-49135710:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.78753662109375	2	470.802563	939.590573	-0.2472	-0.00011638	0.73403	0.00034558	0.48683	0.0002292	470.802856580182	41.133	0.67671	38.179	37.841	38.517	-2.9541					17	12	2	0	0	0	0.028476	1	1825	1825		29.842	16.066	1	21831	+		27718	24546	22703	22730	31002	31002					0.11836146416135307
LALIAIFVTY	10	Unmodified	_LALIAIFVTY_					0	0	0		tr|A0A553SLT6|A0A553SLT6_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_21270PE=3SV=1	tr|A0A553SLT6|A0A553SLT6_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_21270PE=3SV=1	tr|A0A553SLT6|A0A553SLT6_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_21270PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	562.3425903320312	2	562.341718	1122.66888	-1.142	-0.00064221	3.7902	0.0021314	2.6482	0.0014892	562.3438081477608	141.84	4.7959	141.62	140.24	145.03	-0.22697					133	96	2	0	0	0	0.75594	1	14411	14411		24.203	0.68005	1	113870			27719	33761	22704	22731	31003	31003					0.11245534210706865
LALINNIVE	9	Unmodified	_LALINNIVE_					0	0	0		ENSG00000171714|ENST00000324559|ANO5;ENST00000532043.1_1_11:22294373-22299379:+|nuORF	ENSG00000171714|ENST00000324559|ANO5	ENSG00000171714|ENST00000324559|ANO5	MULTI-MSMS	OvCa9_classI_Rep2	2	499.79638671875	2	499.797675	997.580796	1.2387	0.00061911	-4.4901	-0.0022442	-3.2514	-0.001625	499.7951854889041	28.84	1.0646	26.13	25.716	26.781	-2.7097					46	22	4	0	0	0	0.51865	1	642	642		40.778	4.3314	1	100180			27720	7226	22705	22732	31004	31004					0.08190913620080664
LALIQGGPKI	10	Unmodified	_LALIQGGPKI_					0	0	0			REV__nc|ENSG00000170324|Q68DX3-2|FRMPD2	REV__nc|ENSG00000170324|Q68DX3-2|FRMPD2	MULTI-MSMS	OvCa9_classI_Rep2	2	505.3238830566406	2	505.32386	1008.63317	-0.88225	-0.00044582	0.098992	5.0023E-05	-0.78326	-0.0003958	505.32395200705264	104.82	2.7808	104.24	103.97	106.75	-0.57639					155	55	5	0	0	0	0.22395	1	9786	9786		90.777	5.4172	1	5956700	+		27721	21532	22706	22733	31005	31005					0.12919496753715976
LALKDGHGTA	10	Unmodified	_LALKDGHGTA_					0	0	0		LY75|p.S1527*|1|0.06|ENSG00000054219|chr2:159810645-159810645|G/-|frameshift_variant;ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75;ENST00000484559.1_1_2:160728960-160761235:-|nuORF	LY75|p.S1527*|1|0.06|ENSG00000054219|chr2:159810645-159810645|G/-|frameshift_variant	LY75|p.S1527*|1|0.06|ENSG00000054219|chr2:159810645-159810645|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	491.7681579589844	2	491.769448	981.524344	-0.32988	-0.00016222	0.18333	9.0158E-05	-0.14655	-7.2067E-05	491.76948339461615	67.661	1.5803	65	64.397	65.977	-2.661					96	31	4	0	0	0	0.28845	1	5315	5315		82.241	7.7239	1	811710			27722	1206	22707	22734	31006	31006					0.03284285783411178
LALKPKQPW	9	Unmodified	_LALKPKQPW_					0	0	0		ENSG00000159208|ENST00000290363|CIART	ENSG00000159208|ENST00000290363|CIART	ENSG00000159208|ENST00000290363|CIART	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.8308715820312	2	540.831852	1079.64915	-2.0025	-0.001083	1.179	0.00063766	-0.82347	-0.00044536	540.8325567076699	124.8	3.4681	123.41	123.02	126.49	-1.3908					189	68	4	0	0	0	0.65476	1	11994	11994		25.45	8.0852	1	9581200			27723	5993	22708	22735	31007	31007					0.11251202990592901
LALKTLSES	9	Unmodified	_LALKTLSES_					0	0	0		ENST00000592558.1_1_19:39123109-39125644:+|nuORF	ENST00000592558.1_1_19:39123109-39125644:+|nuORF	ENST00000592558.1_1_19:39123109-39125644:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	481.2827453613281	2	481.281857	960.549162	-0.81055	-0.0003901	1.8299	0.00088072	1.0194	0.00049061	481.28269787534566	57.799	2.0625	55.007	54.377	56.44	-2.7921					121	40	4	0	0	0	0.50149	1	4120	4120		42.396	1.618	1	1037900			27724	14137	22709	22736	31008	31008					0.06730920866141332
LALLARSQPA	10	Unmodified	_LALLARSQPA_					0	0	0		ENST00000376440.6_1_13:100038329-100038548:+|nuORF	ENST00000376440.6_1_13:100038329-100038548:+|nuORF	ENST00000376440.6_1_13:100038329-100038548:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.8154296875	2	520.316566	1038.61858	-1.3774	-0.0007167	1.4863	0.00077334	0.10887	5.6644E-05	520.3170657261769	66.025	0.5407	66.025	65.831	66.372	0					20	12	3	0	0	0	0.026688	1	6128	6128		40.778	7.9657	1	441080			27725	11070	22710	22737	31009	31009					0.10081424605550637
LALLLVCVL	9	Unmodified	_LALLLVCVL_					0	0	0			REV__sp|P09705|US29_HCMVAUncharacterizedproteinHHRF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US29PE=3SV=1	REV__sp|P09705|US29_HCMVAUncharacterizedproteinHHRF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US29PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.78118896484375	2	478.814282	955.614011	-0.39236	-0.00018787	3.5856	0.0017168	3.1932	0.001529	478.8159376385073	55.798	1.0111	52.503	52.21	53.221	-3.2944					24	19	2	0	0	0	0.02744	1	3529	3529		29.842	0	1	25866	+		27726	29411	22711	22738	31010	31010					0.13442824138428477
LALLPAGHH	9	Unmodified	_LALLPAGHH_					0	0	0		ENST00000308020.5_1_11:490050-490476:+|nuORF	ENST00000308020.5_1_11:490050-490476:+|nuORF	ENST00000308020.5_1_11:490050-490476:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	463.7797546386719	2	464.771794	927.529036	-0.13261	-6.1635E-05	-1.9439	-0.00090348	-2.0765	-0.00096512	464.76974357326793	35.567	0.5056	35.567	35.293	35.799	0					25	10	4	0	0	0	0.027462	1	1776	1776		14.664	4.4793	1	270530			27727	10263	22712	22739	31011	31011					0.062372147168503034
LALLPSVGI	9	Unmodified	_LALLPSVGI_					0	0	0			REV__ENST00000402010.6_1_11:63676765-63677272:+|nuORF	REV__ENST00000402010.6_1_11:63676765-63677272:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	441.7882080078125	2	441.786579	881.558604	1.974	0.00087209	1.2013	0.00053073	3.1753	0.0014028	441.7869815621319	65.076	1.9762	62.352	61.811	63.787	-2.7245					98	38	4	0	0	0	0.6653	1	4986	4986		24.203	0	1	329800	+		27728	25417	22713	22740	31012	31012					0.11308733942325944
LALLRPALPL	10	Unmodified	_LALLRPALPL_					0	0	0		ENSG00000033100|ENST00000035307|CHPF2;nc|ENSG00000033100|Q9P2E5-2|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	MULTI-MSMS	OvCa9_classI_Rep3	3	538.8621215820312	2	538.863152	1075.71175	0.50313	0.00027112	-1.3946	-0.0007515	-0.89148	-0.00048038	538.8625358740957	133.13	11.263	132	131.63	142.9	-1.1249					494	228	5	0	0	0	0.71192	1	11247	11247		29.15	0	1	10229000			27729	1074	22714	22741	31013	31013					0.17692349058779655
LALLRPALPLI	11	Unmodified	_LALLRPALPLI_					0	0	0		ENSG00000033100|ENST00000035307|CHPF2;nc|ENSG00000033100|Q9P2E5-2|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	MULTI-MSMS	OvCa9_classI_Rep3	3	595.4055786132812	2	595.405184	1188.79581	-3.7371	-0.0022251	3.7133	0.0022109	-0.02382	-1.4183E-05	595.4073030705598	149.52	1.6605	148.57	148.15	149.81	-0.95119					91	32	4	0	0	0	0.46066	1	12649	12649		56.721	9.0637	1	294470			27730	1074	22715	22742	31014	31014					0.20896880155692088
LALLRTLSV	9	Unmodified	_LALLRTLSV_					0	0	0		ENSG00000180739|ENST00000333430|S1PR5	ENSG00000180739|ENST00000333430|S1PR5	ENSG00000180739|ENST00000333430|S1PR5	MULTI-MSMS	OvCa9_classI_Rep3	3	493.3243103027344	2	493.32386	984.633166	-0.72862	-0.00035945	0.48404	0.00023879	-0.24458	-0.00012066	493.32396108529844	115.77	1.6299	114.73	114.45	116.08	-1.0414					67	32	3	0	0	0	0.40667	1	8612	8612		51.335	7.2187	1	204450			27731	7882	22716	22743	31015	31015					0.14023496753702602
LALLRVSGW	9	Unmodified	_LALLRVSGW_					0	0	0		ENST00000558637.1_1_15:86293743-86293866:-|nuORF	ENST00000558637.1_1_15:86293743-86293866:-|nuORF	ENST00000558637.1_1_15:86293743-86293866:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.27239990234375	2	507.808377	1013.6022	-0.94111	-0.0004779	-3.1129	-0.0015807	-4.054	-0.0020586	507.8066895154668	34.281	0.75246	34.281	34.065	34.818	0					23	15	3	0	0	0	0.027462	1	1705	1705		18.324	3.6603	1	239150			27732	13702	22717	22744	31016	31016					0.09594343439471231
LALLVLTYVS	10	Unmodified	_LALLVLTYVS_					0	0	0		ENST00000464590.1_1_11:3844931-3845577:+|nuORF;ENST00000478773.5_1_11:3829798-3845998:+|nuORF;ENST00000532017.5_1_11:3832520-3846091:+|nuORF;nc|ENSG00000148985|Q9UHJ9-4|PGAP2;nc|ENSG00000148985|Q9UHJ9-3|PGAP2;nc|ENSG00000148985|Q9UHJ9|PGAP2;nc|ENSG00000148985|Q9UHJ9-5|PGAP2;ENSG00000148985|ENST00000278243|PGAP2	ENST00000464590.1_1_11:3844931-3845577:+|nuORF	ENST00000464590.1_1_11:3844931-3845577:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	546.2525024414062	2	546.339175	1090.6638	0.78059	0.00042647	-0.51065	-0.00027899	0.26994	0.00014748	546.339042502296	120.37	0.24607	119.34	119.22	119.46	-1.0271					6	4	2	0	0	0	0.026752	1	9173	9173		27.882	0	1	5257.3			27733	12257	22718	22745	31017	31017					0.12209230348094025
LALLWPRFELI	11	Unmodified	_LALLWPRFELI_					0	0	0		ENST00000471309.1_1_6:33231312-33232261:-|nuORF;nc|ENSG00000223501|Q8N1B4-2|VPS52;ENSG00000223501|ENST00000445902|VPS52	ENST00000471309.1_1_6:33231312-33232261:-|nuORF	ENST00000471309.1_1_6:33231312-33232261:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	457.6075439453125	3	457.611341	1369.81219	-3.7462	-0.0017143	-3.6323	-0.0016622	-7.3785	-0.0033765	457.60971240856696	157.06	2.9403	156.83	155.39	158.33	-0.22696					220	89	3	0	0	0	0.72538	1	16036	16036		10.587	0	1	46638			27734	9248	22719	22746	31018	31018					0.14207961321812945
LALLYWVL	8	Unmodified	_LALLYWVL_					0	0	0		ENST00000313368.7_1_5:140698470-140698509:-|nuORF	ENST00000313368.7_1_5:140698470-140698509:-|nuORF	ENST00000313368.7_1_5:140698470-140698509:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	495.802978515625	2	495.804771	989.59499	2.2845	0.0011327	-3.1204	-0.0015471	-0.83587	-0.00041443	495.80302956480034	94.872	0.63641	94.872	94.648	95.284	0					32	14	3	0	0	0	0.58426	1	10346	10346		67.327	0	1	831100			27735	10312	22720	22747	31019	31019					0.09977610839030149
LALLYWVL	8	Unmodified	_LALLYWVL_					0	0	0		ENST00000313368.7_1_5:140698470-140698509:-|nuORF	ENST00000313368.7_1_5:140698470-140698509:-|nuORF	ENST00000313368.7_1_5:140698470-140698509:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	495.804771	989.59499	0.17531	8.6922E-05	-4.6579	-0.0023094	-4.4826	-0.0022225	495.8022990458876	95.822	0.69651	94.794	94.565	95.262	-1.0281	-0.06187	-0.00045466	NaN	67.327	39	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142540			27736	10312	22720	22747							0.09977610839030149
LALLYWVL	8	Unmodified	_LALLYWVL_					0	0	0		ENST00000313368.7_1_5:140698470-140698509:-|nuORF	ENST00000313368.7_1_5:140698470-140698509:-|nuORF	ENST00000313368.7_1_5:140698470-140698509:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	495.804771	989.59499	-0.91965	-0.00045596	-3.5321	-0.0017512	-4.4517	-0.0022072	495.8028429616157	96.73	0.77357	94.901	94.571	95.345	-1.8286	0.045604	0.0006617	NaN	67.327	39	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174690			27737	10312	22720	22747							0.09977610839030149
LALMLSIVIPP	11	Unmodified	_LALMLSIVIPP_					0	0	0		ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	MULTI-MSMS	OvCa9_classI_Rep4_	4	583.8602294921875	2	583.864503	1165.71445	-5.3703	-0.0031355	-4.3518	-0.0025409	-9.722	-0.0056764	583.8618452827162	155.36	1.2983	153.87	153.54	154.84	-1.4911					100	37	4	0	0	0	0.72244	1	15441	15441		21.96	1.9631	1	230740			27738	8849	22721	22748	31020	31020					0.138224364014377
LALNDLPNN	9	Unmodified	_LALNDLPNN_					0	0	0			REV__ENST00000335730.6_1_18:44089558-44181581:-|nuORF	REV__ENST00000335730.6_1_18:44089558-44181581:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.7822570800781	2	492.261456	982.50836	-0.76409	-0.00037613	-0.30382	-0.00014956	-1.0679	-0.00052569	492.2611906717592	71.824	0.62856	68.368	68.222	68.851	-3.4563					21	12	2	0	0	0	0.027433	1	5509	5509		60.972	13.315	1	177040	+		27739	21263	22722	22749	31021	31021					0.016405795465175288
LALNTRPDI	9	Unmodified	_LALNTRPDI_					0	0	0			REV__tr|A0A7D6VRB7|A0A7D6VRB7_9CLOTV-typeATPsynthasealphachainOS=ClostridiumintestinaleOX=36845GN=atpAPE=3SV=1	REV__tr|A0A7D6VRB7|A0A7D6VRB7_9CLOTV-typeATPsynthasealphachainOS=ClostridiumintestinaleOX=36845GN=atpAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.8113708496094	2	506.792924	1011.57129	-0.20609	-0.00010444	0.54538	0.0002764	0.33929	0.00017195	506.7929990008411	72.593	1.1474	70.193	69.645	70.792	-2.3999					41	21	3	0	0	0	0.027343	1	5873	5873		68.787	0	1	58858	+		27740	31403	22723	22750	31022	31022					0.06597145334569632
LALPFLTSF	9	Unmodified	_LALPFLTSF_					0	0	0		ENST00000466409.1_1_9:95873162-95873573:+|nuORF	ENST00000466409.1_1_9:95873162-95873573:+|nuORF	ENST00000466409.1_1_9:95873162-95873573:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	504.7895812988281	2	504.791861	1007.56917	-1.5143	-0.00076442	-2.7771	-0.0014019	-4.2915	-0.0021663	504.79037457999766	54.562	1.2968	51.748	51.375	52.671	-2.8139					67	25	4	0	0	0	0.32337	1	3769	3769		60.294	0	1	416460			27741	12288	22724	22751	31023	31023					0.0656871659675744
LALPLAPQDP	10	Unmodified	_LALPLAPQDP_					0	0	0			REV__ENST00000343125.8_1_17:72691060-72691132:-|nuORF	REV__ENST00000343125.8_1_17:72691060-72691132:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.7537841796875	2	517.797675	1033.5808	0.027831	1.4411E-05	-1.5911	-0.00082385	-1.5632	-0.00080944	517.7963848450651	99.908	0.45792	98.223	97.932	98.39	-1.685					11	8	2	0	0	0	0.026697	1	6722	6722		37.159	0	1	17771	+		27742	24667	22725	22752	31024	31024					0.06534913620089355
LALPLVPPSI	10	Unmodified	_LALPLVPPSI_					0	0	0			REV__ENST00000533210.5_1_8:144649355-144650416:-|nuORF	REV__ENST00000533210.5_1_8:144649355-144650416:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.3115539550781	2	510.328611	1018.64267	1.8245	0.00093108	3.5261	0.0017995	5.3506	0.0027305	510.33046418024776	126.49	0.18848	126.49	126.37	126.56	0					5	3	2	0	0	0	0.026519	1	14629	14629		76.847	20.126	1	33924	+		27743	27255	22726	22753	31025	31025					0.13409265039229012
LALPPATK	8	Unmodified	_LALPPATK_					0	0	0		ENSG00000141905|ENST00000443272|NFIC;nc|ENSG00000141905|P08651-2|NFIC;ENST00000589969.1_1_19:3453784-3454096:+|nuORF	ENSG00000141905|ENST00000443272|NFIC	ENSG00000141905|ENST00000443272|NFIC	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.7454833984375	2	405.757821	809.501089	0.78762	0.00031958	-0.86804	-0.00035221	-0.080415	-3.2629E-05	405.7573501143733	40.396	0.23215	40.396	40.294	40.526	0					7	4	2	0	0	0	0.028476	1	2446	2446		23.042	3.6825	1	25044			27744	4945	22727	22754	31026	31026					0.08871891736760062
LALPTALKR	9	Unmodified	_LALPTALKR_					0	0	0		ENST00000515049.1_1_17:48016676-48017012:+|nuORF	ENST00000515049.1_1_17:48016676-48017012:+|nuORF	ENST00000515049.1_1_17:48016676-48017012:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	491.822998046875	2	491.824027	981.633501	-0.60972	-0.00029987	0.45985	0.00022617	-0.14986	-7.3707E-05	491.82410532808257	68.139	1.6844	65.478	65.09	66.774	-2.661					84	33	4	0	0	0	0.31747	1	5347	5347		60.972	5.4677	1	431140			27745	13038	22728	22755	31027	31027					0.14194916473547892
LALQPLGPGLQ	11	Unmodified	_LALQPLGPGLQ_					0	0	0		nc|ENSG00000256453|Q8IYX4|DND1	nc|ENSG00000256453|Q8IYX4|DND1	nc|ENSG00000256453|Q8IYX4|DND1	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8302001953125	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.71191	1	12011	12011		25.574	0	1	308210			27746	15355	22729	22756	31028	31028					0.10094577919812764
LALQRGEDP	9	Unmodified	_LALQRGEDP_					0	0	0		nc|ENSG00000100029|O00541-2|PES1;ENSG00000100029|ENST00000354694|PES1;ENST00000508165.1_1_4:135249290-135249890:+|nuORF;ENST00000488719.1_1_22:30975561-30975981:-|nuORF	nc|ENSG00000100029|O00541-2|PES1;ENST00000488719.1_1_22:30975561-30975981:-|nuORF	nc|ENSG00000100029|O00541-2|PES1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.32733154296875	2	499.766906	997.519259	1.0075	0.00050352	-3.4644	-0.0017314	-2.4569	-0.0012279	499.7653040632196	105.77	0.30572	105.77	105.57	105.88	0					10	6	2	0	0	0	0.027462	1	11890	11890		21.96	0	1	161660			27747	1996;12669	22730	22757	31029	31029					0.020399819208023473
LALQSEQVL	9	Unmodified	_LALQSEQVL_					0	0	0		nc|ENSG00000044459|Q9NXG0|CNTLN;ENSG00000044459|ENST00000380647|CNTLN	nc|ENSG00000044459|Q9NXG0|CNTLN	nc|ENSG00000044459|Q9NXG0|CNTLN	MULTI-MSMS	OvCa99_classI_Rep5	1	501.29241943359375	2	500.787307	999.560061	1.8388	0.00092086	3.6604	0.0018331	5.4993	0.002754	500.7872958122554	96.8	0.97971	96.8	96.543	97.522	0					58	22	6	0	0	0	0.44294	1	10608	10608		47.916	3.5384	1	5115100			27748	1133	22731	22758	31030	31030					0.060263232404167866
LALRALRDPKK	11	Unmodified	_LALRALRDPKK_					0	0	0		ENSG00000203859|ENST00000369416|HSD3B2	ENSG00000203859|ENST00000369416|HSD3B2	ENSG00000203859|ENST00000369416|HSD3B2	MULTI-SECPEP	OvCa9_classI_Rep3	3	427.9298400878906	3	427.610223	1279.80884	1.7567	0.00075116	-2.0153	-0.00086176	-0.25865	-0.0001106	427.60939242720275	65.372	0.25406	62.426	62.3	62.554	-2.9459					5	4	2	0	0	0	0.026174	1	2622	2622		22.562	6.5548	1	10153			27749	8937	22732	22759	31031	31031					0.18012711267761006
LALRARAL	8	Unmodified	_LALRARAL_					0	0	0			REV__nc|ENSG00000164506|Q5T5C0-3|STXBP5	REV__nc|ENSG00000164506|Q5T5C0-3|STXBP5	MULTI-MSMS	OvCa9_classI_Rep3	3	442.29541015625	2	442.295436	882.57632	1.1711	0.00051796	-1.1461	-0.00050691	0.024984	1.105E-05	442.29478158901236	67.455	1.5001	64.568	64.341	65.841	-2.8873					61	29	3	0	0	0	0.74816	1	2856	2856		15.636	0	1	227400	+		27750	20994	22733	22760	31032	31032					0.13033493987825295
LALRFYEA	8	Unmodified	_LALRFYEA_					0	0	0			REV__ENST00000466482.5_1_3:98489996-98501720:+|nuORF	REV__ENST00000466482.5_1_3:98489996-98501720:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	491.76849365234375	2	491.77146	981.528367	-0.32988	-0.00016222	-3.9067	-0.0019212	-4.2366	-0.0020834	491.76948339461615	67.661	1.5803	65	64.397	65.977	-2.661					96	31	4	0	0	0	0.47599	1	5329	5329		79.939	0	1	811710	+		27751	16766	22734	22761	31033	31033					0.036863752771296276
LALRKTVMPAL	11	Unmodified	_LALRKTVMPAL_					0	0	0		ENST00000527370.5_1_11:67264693-67266053:-|nuORF;nc|ENSG00000110697|O00562-2|PITPNM1;ENSG00000110697|ENST00000356404|PITPNM1	ENST00000527370.5_1_11:67264693-67266053:-|nuORF	ENST00000527370.5_1_11:67264693-67266053:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	606.8159790039062	2	606.878476	1211.7424	-0.33155	-0.00020121	-3.1027	-0.0018829	-3.4342	-0.0020841	606.8765372479077	95.966	1.236	94.938	94.664	95.9	-1.0281					39	24	2	0	0	0	0.025277	1	8628	8628		47.96	0.30219	1	49218			27752	2787	22735	22762	31034	31034					0.14499759381556032
LALRLVVSP	9	Unmodified	_LALRLVVSP_					0	0	0			REV__ENST00000373509.5_1_6:37137999-37138269:+|nuORF	REV__ENST00000373509.5_1_6:37137999-37138269:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.318115234375	2	484.318577	966.622602	0.062107	3.008E-05	-0.5238	-0.00025369	-0.4617	-0.00022361	484.31822110517277	116.03	1.267	114.67	114.4	115.67	-1.3645					57	24	4	0	0	0	0.55588	1	10834	10834		37.159	3.6435	1	196150	+		27753	25042	22736	22763	31035	31035					0.13795514099274442
LALRVANII	9	Unmodified	_LALRVANII_					0	0	0		tr|A0A7D6W2E1|A0A7D6W2E1_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05930PE=3SV=1	tr|A0A7D6W2E1|A0A7D6W2E1_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05930PE=3SV=1	tr|A0A7D6W2E1|A0A7D6W2E1_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05930PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	491.82281494140625	2	491.824027	981.633501	-0.60972	-0.00029987	0.45985	0.00022617	-0.14986	-7.3707E-05	491.82410532808257	68.139	1.6844	65.478	65.09	66.774	-2.661					84	33	4	0	0	0	0.34496	1	5358	5358		57.811	1.0902	1	431140			27754	35427	22737	22764	31036	31036					0.14194916473547892
LALSKRLH	8	Unmodified	_LALSKRLH_					0	0	0			REV__nc|ENSG00000173040|Q86UK5-2|EVC2	REV__nc|ENSG00000173040|Q86UK5-2|EVC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	469.7707214355469	2	469.300719	936.586885	0.60067	0.0002819	-1.8484	-0.00086746	-1.2477	-0.00058556	469.2996868710715	61.421	0.75869	57.977	57.731	58.489	-3.4439					22	15	2	0	0	0	0.028476	1	4228	4228		40.573	0	1	81062	+		27755	21743	22738	22765	31037	31037					0.11605476642262147
LALSKRLH	8	Unmodified	_LALSKRLH_					0	0	0			REV__nc|ENSG00000173040|Q86UK5-2|EVC2	REV__nc|ENSG00000173040|Q86UK5-2|EVC2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	469.300719	936.586885	-0.97323	-0.00045674	2.1519	0.0010099	1.1787	0.00055316	469.30066933240676	60.65	1.1086	57.879	57.448	58.557	-2.7702	-0.04899	0.0028847	NaN	24.203	39	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58212	+		27756	21743	22738	22765							0.11605476642262147
LALSLDSTL	9	Unmodified	_LALSLDSTL_					0	0	0			REV__nc|ENSG00000138617|Q8N5Y8-3|PARP16	REV__nc|ENSG00000138617|Q8N5Y8-3|PARP16	MULTI-MSMS	OvCa99_classI_Rep5	1	466.77099609375	2	466.768583	931.522613	2.0325	0.00094872	0.86488	0.0004037	2.8974	0.0013524	466.76926594166116	90.491	3.1615	90.491	90.143	93.305	0					192	76	6	0	0	0	0.53957	1	9847	9847		38.806	1.647	1	25081000	+		27757	19549	22739	22766	31038	31038					0.05411231974801467
LALSLLELLG	10	Unmodified	_LALSLLELLG_					0	0	0		nc|ENSG00000011021|P51797-6|CLCN6;ENSG00000011021|ENST00000346436|CLCN6;nc|ENSG00000011021|P51797-5|CLCN6;nc|ENSG00000011021|P51797-4|CLCN6;nc|ENSG00000011021|P51797-2|CLCN6;nc|ENSG00000011021|P51797-3|CLCN6	nc|ENSG00000011021|P51797-6|CLCN6	nc|ENSG00000011021|P51797-6|CLCN6	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.8154296875	2	521.33135	1040.64815	-1.2773	-0.00066589	1.8059	0.00094146	0.52857	0.00027556	521.3321138860645	66.156	0.22866	66.156	66.059	66.288	0					8	5	2	0	0	0	0.026523	1	6128	6128		40.778	6.6056	1	155700			27758	954	22740	22767	31039	31039					0.12944943831030287
LALSRVLLM	9	Unmodified	_LALSRVLLM_					0	0	0			REV__ENST00000369441.7_1_1:118472393-118476258:+|nuORF	REV__ENST00000369441.7_1_1:118472393-118476258:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	508.31585693359375	2	508.320263	1014.62597	1.3208	0.00067137	-4.1282	-0.0020985	-2.8075	-0.0014271	508.31794640443843	149.8	0.84294	149.8	149.4	150.24	0					32	16	3	0	0	0	0.40667	1	17516	17516		51.335	0.14276	1	90862	+		27759	24713	22741	22768	31040	31040					0.11924440881625742
LALSSRSGLE	10	Unmodified	_LALSSRSGLE_					0	0	0		ENST00000584868.1_1_19:40827171-40828232:-|nuORF;ENST00000582734.1_1_19:40827791-40830098:-|nuORF;nc|nan|Q8N9M1-3|C19orf47;nc|nan|Q8N9M1-2|C19orf47;ENSG00000160392|ENST00000683109|C19orf47;nc|nan|Q8N9M1|C19orf47	ENST00000584868.1_1_19:40827171-40828232:-|nuORF	ENST00000584868.1_1_19:40827171-40828232:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.8291015625	2	516.787838	1031.56112	3.0789	0.0015912	-0.52561	-0.00027163	2.5533	0.0013195	516.7876350751418	134	0.49417	132.47	132.29	132.78	-1.5257					10	9	2	0	0	0	0.027001	1	12951	12951		42.864	14.61	1	6776			27760	6062	22742	22769	31041	31041					0.046605376093339146
LALSWAELRTI	11	Unmodified	_LALSWAELRTI_					0	0	0			REV__ENSG00000003989|ENST00000494857|SLC7A2	REV__ENSG00000003989|ENST00000494857|SLC7A2	MULTI-MSMS	OvCa9_classI_Rep2	2	424.9132080078125	3	424.915201	1271.72377	-1.447	-0.00061484	-1.8753	-0.00079685	-3.3223	-0.0014117	424.9143610103723	63.409	1.7871	60.665	60.004	61.791	-2.7444					105	33	5	0	0	0	0.69081	1	4798	4798		28.577	0	1	695510	+		27761	16377	22743	22770	31042	31042					0.09877921011297985
LALSWRLL	8	Unmodified	_LALSWRLL_					0	0	0			REV__ENST00000409835.5_1_2:63587012-63815411:-|nuORF	REV__ENST00000409835.5_1_2:63587012-63815411:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	486.30584716796875	2	486.30547	970.596387	0.60247	0.00029298	-1.3637	-0.00066315	-0.76119	-0.00037017	486.3047947264386	124.97	2.7662	124.74	124.37	127.13	-0.2359					156	55	5	0	0	0	0.60331	1	12153	12153		63.306	2.3343	1	3410600	+		27762	25483	22744	22771	31043	31043					0.10991244927799926
LALSWRLL	8	Unmodified	_LALSWRLL_					0	0	0			REV__ENST00000409835.5_1_2:63587012-63815411:-|nuORF	REV__ENST00000409835.5_1_2:63587012-63815411:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	486.3044128417969	2	486.30547	970.596387	0.86253	0.00041945	-1.5289	-0.00074351	-0.66637	-0.00032406	486.3047324036629	126.22	3.5173	125.15	124.71	128.23	-1.0715					158	68	5	0	0	0	0.60331	2	9856	9856;9936		63.306	3.7988	1	3175900	+		27763	25483	22744	22771	31044;31045	31044					0.10991244927799926
LALSWRLL	8	Unmodified	_LALSWRLL_					0	0	0			REV__ENST00000409835.5_1_2:63587012-63815411:-|nuORF	REV__ENST00000409835.5_1_2:63587012-63815411:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.3052978515625	2	486.30547	970.596387	-1.8727	-0.00091069	1.17	0.00056898	-0.70267	-0.00034171	486.3060163931478	126.56	4.5912	125.14	124.48	129.07	-1.4143					192	91	5	0	0	0	0.60331	1	12076	12076		63.306	3.0123	1	3302400	+		27764	25483	22744	22771	31046	31046					0.10991244927799926
LALTSLQSL	9	Unmodified	_LALTSLQSL_					0	0	0			REV__ENST00000473978.5_1_3:195974976-195997402:-|nuORF	REV__ENST00000473978.5_1_3:195974976-195997402:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	473.28338623046875	2	473.2844	944.554247	0.23176	0.00010969	-1.092	-0.00051685	-0.86028	-0.00040716	473.2837734695887	86.706	1.6364	85.275	84.553	86.189	-1.4311					90	31	4	0	0	0	0.041116	1	7540	7540		125.81	1.7339	1	769710	+		27765	26337	22745	22772	31047	31047					0.079752247287729
LALTSLQSL	9	Unmodified	_LALTSLQSL_					0	0	0			REV__ENST00000473978.5_1_3:195974976-195997402:-|nuORF	REV__ENST00000473978.5_1_3:195974976-195997402:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	473.2850646972656	2	473.2844	944.554247	-0.10806	-5.1144E-05	-0.40018	-0.0001894	-0.50824	-0.00024054	473.28413493565273	87.445	1.1311	85.268	84.884	86.015	-2.1768					74	21	4	0	0	0	0.019133	1	5256	5256		148.04	6.5225	1	1460100	+		27766	26337	22745	22772	31048	31048					0.079752247287729
LALTVERLQ	9	Unmodified	_LALTVERLQ_					0	0	0			REV__ENSG00000142207|ENST00000382751|URB1	REV__ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	OvCa99_classI_Rep5	1	521.8209228515625	2	521.816399	1041.61824	-0.58471	-0.00030511	1.3743	0.00071711	0.78955	0.000412	521.8172328719529	105.06	0.61461	105.06	104.79	105.4	0					36	13	4	0	0	0	0.079296	1	11779	11779		102.77	0	1	3411400	+		27767	19776	22746	22773	31049	31049					0.09910004885705348
LALVEMVE	8	Unmodified	_LALVEMVE_					0	0	0			REV__tr|A0A553STQ0|A0A553STQ0_NIACIIclRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_05130PE=4SV=1	REV__tr|A0A553STQ0|A0A553STQ0_NIACIIclRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_05130PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	452.24920654296875	2	452.246429	902.478305	0.15665	7.0842E-05	3.7604	0.0017006	3.917	0.0017715	452.2480983931767	52.736	1.7702	49.528	49.145	50.915	-3.208					96	34	4	0	0	0	0.52992	1	3214	3214		74.517	3.1387	1	3132400	+		27768	30994	22747	22774	31050	31050					0.023165045569726317
LALVLPKAR	9	Unmodified	_LALVLPKAR_					0	0	0		ENST00000507952.1_1_10:75490350-75491018:+|nuORF	ENST00000507952.1_1_10:75490350-75491018:+|nuORF	ENST00000507952.1_1_10:75490350-75491018:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.73870849609375	2	490.834394	979.654236	0.22111	0.00010853	-0.68318	-0.00033533	-0.46208	-0.0002268	490.8339210461978	78.081	1.3834	75.264	74.922	76.305	-2.8165					59	28	3	0	0	0	0.027462	1	6347	6347		26.796	0	1	347640			27769	12937	22748	22775	31051	31051					0.16359506853223138
LALVQAIER	9	Unmodified	_LALVQAIER_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;TRIP12-MFI2|1|fusion;ENST00000470302.5_1_2:230656574-230657731:-|nuORF	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MSMS	OvCa9_classI_Rep2	2	506.8096618652344	2	506.811116	1011.60768	1.4081	0.00071364	-2.4174	-0.0012251	-1.0093	-0.00051151	506.809990859047	88.555	2.3705	87.187	86.69	89.061	-1.3676					168	47	5	0	0	0	0.21395	1	7791	7791		73.975	8.1716	1	5233500			27770	5697	22749	22776	31052	31052					0.10234022231270501
LALVRAPSM	9	Unmodified	_LALVRAPSM_					0	0	0			REV__ENSG00000158008|ENST00000374280|EXTL1	REV__ENSG00000158008|ENST00000374280|EXTL1	MULTI-MSMS	OvCa9_classI_Rep3	3	479.28021240234375	2	479.281137	956.547722	-0.4527	-0.00021697	-3.0726	-0.0014726	-3.5253	-0.0016896	479.2796688729981	96.325	1.9148	94.496	94.027	95.941	-1.8286					106	37	4	0	0	0	0.16524	1	6380	6380		82.305	5.4584	1	3171600	+		27771	20544	22750	22777	31053	31053					0.06771008296391301
LALVTRHG	8	Unmodified	_LALVTRHG_					0	0	0		ENSG00000083290|ENST00000395544|ULK2	ENSG00000083290|ENST00000395544|ULK2	ENSG00000083290|ENST00000395544|ULK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	432.9032287597656	2	433.763969	865.513385	-0.073841	-3.203E-05	0.15254	6.6167E-05	0.0787	3.4137E-05	433.7639365994206	37.975	0.35433	37.975	37.806	38.161	0					11	7	2	0	0	0	0.028476	1	2105	2105		19.36	0	1	47845			27772	1690	22751	22778	31054	31054					0.07524928199791248
LALWGGLLPP	10	Unmodified	_LALWGGLLPP_					0	0	0		ENSG00000179431|ENST00000317811|FJX1	ENSG00000179431|ENST00000317811|FJX1	ENSG00000179431|ENST00000317811|FJX1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.2855224609375	2	518.813128	1035.6117	-1.5939	-0.00082694	3.8025	0.0019728	2.2086	0.0011459	518.8155618235371	127.35	0.44797	125.92	125.59	126.04	-1.4357					11	8	2	0	0	0	0.027007	1	12109	12109		26.796	11.154	1	11179			27773	7822	22752	22779	31055	31055					0.09532111724979586
LALWLTNLL	9	Unmodified	_LALWLTNLL_					0	0	0		ENSG00000148935|ENST00000454584|GAS2;nc|ENSG00000148935|O43903-2|GAS2;ENST00000533092.1_1_11:22696415-22723789:+|nuORF	ENSG00000148935|ENST00000454584|GAS2	ENSG00000148935|ENST00000454584|GAS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3649291992188	2	528.826235	1055.63792	0.67219	0.00035547	0.67921	0.00035918	1.3514	0.00071465	529.3281916137267	158.79	0.3828	158.79	158.61	158.99	0					11	7	2	0	0	0	0.027433	1	18622	18622		57.811	13.434	1	26751			27774	5433	22753	22780	31056	31056					0.11232380896467475
LALWPRLA	8	Unmodified	_LALWPRLA_					0	0	0		ENST00000344823.9_1_16:3451289-3451709:+|nuORF	ENST00000344823.9_1_16:3451289-3451709:+|nuORF	ENST00000344823.9_1_16:3451289-3451709:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	470.2901306152344	2	470.292362	938.570172	-0.39524	-0.00018588	-4.1264	-0.0019406	-4.5217	-0.0021265	470.2902710292615	46.08	1.59	43.371	42.998	44.588	-2.7097					64	31	3	0	0	0	0.68312	1	2749	2749		46.766	7.7449	1	432530			27775	10617	22754	22781	31057	31057					0.09842975756316719
LALYNKRKWKR	11	Unmodified	_LALYNKRKWKR_					0	0	0			REV__nc|ENSG00000106443|O94880-2|PHF14	REV__nc|ENSG00000106443|O94880-2|PHF14	MULTI-MSMS	OvCa9_classI_Rep2	2	492.6349182128906	3	492.636772	1474.88849	-4.4123	-0.0021737	-0.46274	-0.00022796	-4.8751	-0.0024016	492.6364518280441	160.52	2.4825	160.29	159.35	161.83	-0.22697					136	50	4	0	0	0	0.72568	1	16306	16306		6.6596	0	1	91160	+		27776	17803	22755	22782	31058	31058					0.1700377794174983
LALYPAKSF	9	Unmodified	_LALYPAKSF_					0	0	0		tr|A0A553SJB2|A0A553SJB2_NIACIAldehydedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16455PE=3SV=1	tr|A0A553SJB2|A0A553SJB2_NIACIAldehydedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16455PE=3SV=1	tr|A0A553SJB2|A0A553SJB2_NIACIAldehydedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16455PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.8146057128906	2	505.289485	1008.56442	-0.27619	-0.00013956	0.0075553	3.8176E-06	-0.26864	-0.00013574	505.2893187599981	107.61	1.1708	107.3	107.07	108.24	-0.30836					42	23	3	0	0	0	0.027402	1	10062	10062		76.774	5.4784	1	64754			27777	33486	22756	22783	31059	31059					0.060478324539985806
LAMASLQITGT	11	Unmodified	_LAMASLQITGT_					0	0	0			REV__ENSG00000144035|ENST00000272425|NAT8	REV__ENSG00000144035|ENST00000272425|NAT8	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.2644653320312	2	553.299724	1104.5849	0.9687	0.00053598	1.7029	0.00094223	2.6716	0.0014782	553.3002806998236	154.08	0.79727	154.08	153.93	154.72	0					19	15	2	0	0	0	0.025912	1	18053	18053		16.717	8.4861	1	29093	+		27778	19886	22757	22784	31060	31060					0.036786350515058075
LAMEASWIAL	10	Oxidation (M)	_LAM(Oxidation (M))EASWIAL_		LAM(1)EASWIAL		LAM(63)EASWIAL	0	0	1		ENST00000460006.5_1_20:5170384-5170444:+|nuORF	ENST00000460006.5_1_20:5170384-5170444:+|nuORF	ENST00000460006.5_1_20:5170384-5170444:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	560.7896728515625	2	560.788992	1119.56343	0.076238	4.2753E-05	3.0459	0.0017081	3.1221	0.0017508	560.7906951341574	64.273	2.9179	61.548	60.968	63.886	-2.7245					181	56	6	0	0	0	0.43592	1	4888	4888		63.306	6.8725	1	2758800			27779	12145	22758	22785	31061	31061		333			0.008432500227627315
LAMFGNAK	8	Oxidation (M)	_LAM(Oxidation (M))FGNAK_		LAM(1)FGNAK		LAM(66)FGNAK	0	0	1			REV__ENSG00000181017|ENST00000641377|OR56B2P	REV__ENSG00000181017|ENST00000641377|OR56B2P	MULTI-MSMS	OvCa99_classI_Rep5	1	434.2252197265625	2	434.223288	866.432024	2.3422	0.001017	1.126	0.00048894	3.4682	0.001506	434.22360779184106	134.67	1.4472	134.67	134.43	135.88	0					70	31	3	0	0	0	0.59103	1	15739	15739		65.897	8.0862	1	1064400	+		27780	22213	22759	22786	31062	31062		513			-0.006535155544497684
LAMIHGHVL	9	Unmodified	_LAMIHGHVL_					0	0	0			REV__tr|A0A7D6VP23|A0A7D6VP23_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14975PE=4SV=1	REV__tr|A0A7D6VP23|A0A7D6VP23_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14975PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.7242431640625	2	495.781305	989.548056	-0.29755	-0.00014752	4.026	0.001996	3.7284	0.0018485	495.78292805129183	76.595	0.57074	73.656	73.55	74.121	-2.9389					16	11	2	0	0	0	0.02744	1	6089	6089		60.404	21.597	1	58579	+		27781	31224	22760	22787	31063	31063					0.0528642801625665
LAMIHGHVL	9	Unmodified	_LAMIHGHVL_					0	0	0			REV__tr|A0A7D6VP23|A0A7D6VP23_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14975PE=4SV=1	REV__tr|A0A7D6VP23|A0A7D6VP23_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14975PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	495.781305	989.548056	-0.41338	-0.00020495	4.0649	0.0020153	3.6515	0.0018104	495.7835735156795	75.666	0.30479	73.812	73.739	74.044	-1.854	0.078059	2.7283E-05	NaN	49.211	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17461	+		27782	31224	22760	22787							0.0528642801625665
LAMTNVWH	8	Unmodified	_LAMTNVWH_					0	0	0			REV__ENSG00000073536|ENST00000442241|NLE1	REV__ENSG00000073536|ENST00000442241|NLE1	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.3041076660156	2	486.242012	970.469472	0.96289	0.0004682	1.1446	0.00055656	2.1075	0.0010248	486.2422355638327	125.94	0.77716	124.89	124.53	125.3	-1.0519					25	14	3	0	0	0	0.028476	1	9828	9828		60.294	0.17569	1	19022	+		27783	16935	22761	22788	31064	31064					-0.016944242888371264
LAMVSVVKN	9	Unmodified	_LAMVSVVKN_					0	0	0			REV__nc|ENSG00000273085|Q8NGJ3|OR52E1	REV__nc|ENSG00000273085|Q8NGJ3|OR52E1	MULTI-MSMS	OvCa99_classI_Rep5	1	480.781494140625	2	480.78097	959.547388	1.6806	0.00080802	-3.1608	-0.0015196	-1.4801	-0.00071163	480.77915172270156	122.89	0.27503	122.89	122.72	123	0					8	5	2	0	0	0	0.40667	1	14165	14165		51.335	3.4199	1	70403	+		27784	29191	22762	22789	31065	31065					0.06599588576546012
LANAERTL	8	Unmodified	_LANAERTL_					0	0	0			REV__SPTBN2|p.R1805Qfs*108|1|0.25|ENSG00000173898|chr11:66691414-66691435|TGGCGTGCCCCGTGCAGGAAGC/-|frameshift_variant	REV__SPTBN2|p.R1805Qfs*108|1|0.25|ENSG00000173898|chr11:66691414-66691435|TGGCGTGCCCCGTGCAGGAAGC/-|frameshift_variant	MSMS	OvCa9_classI_Rep4_	4	444.2519226074219	2	444.250892	886.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.239	1	44.167	43.667	44.667	-3.0724								0	0	0	0.30129	1	2528	2528		73.975	2.0973	1		+		27785	21807	22763	22790	31066	31066					0.03944614237661881
LANALLIN	8	Unmodified	_LANALLIN_					0	0	0			REV__tr|A0A7D6VR24|A0A7D6VR24_9CLOTDUF4173domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00800PE=4SV=1	REV__tr|A0A7D6VR24|A0A7D6VR24_9CLOTDUF4173domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00800PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	421.2591247558594	2	421.260728	840.506903	0.1688	7.111E-05	-3.1201	-0.0013144	-2.9513	-0.0012433	421.2592965587955	134.89	1.4682	134.66	133.66	135.13	-0.22696					55	29	3	0	0	0	0.75661	1	13345	13345		19.36	0	1	378840	+		27786	31380	22764	22791	31067	31067					0.08026990248413313
LANDKAKAE	9	Unmodified	_LANDKAKAE_					0	0	0			REV__tr|A0A553SGU6|A0A553SGU6_NIACIUVDNAdamagerepairendonucleaseUvsEOS=NialliacirculansOX=1397GN=uvsEPE=4SV=1	REV__tr|A0A553SGU6|A0A553SGU6_NIACIUVDNAdamagerepairendonucleaseUvsEOS=NialliacirculansOX=1397GN=uvsEPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.2626647949219	2	480.261456	958.50836	-0.20179	-9.6911E-05	0.085067	4.0855E-05	-0.11672	-5.6057E-05	480.26138226800697	46.911	1.9338	43.839	43.501	45.435	-3.0724					64	37	4	0	0	0	0.029147	1	2512	2512		136.27	42.671	1	1060000	+		27787	29739	22765	22792	31068	31068					0.027445795465155243
LANFLRPL	8	Unmodified	_LANFLRPL_					0	0	0		ENST00000498652.1_1_7:27186997-27192018:-|nuORF;ENST00000518451.1_1_7:27166683-27192069:-|nuORF;ENST00000467897.2_1_7:27168846-27192162:-|nuORF	ENST00000498652.1_1_7:27186997-27192018:-|nuORF	ENST00000498652.1_1_7:27186997-27192018:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.27752685546875	2	472.28982	942.565087	-0.15588	-7.3621E-05	0.36296	0.00017142	0.20708	9.78E-05	472.2899538328053	70.714	1.3105	70.714	69.798	71.109	0					41	32	2	0	0	0	0.028476	1	6670	6670		40.573	10.069	1	470280			27788	12317	22766	22793	31069	31069					0.09150671893701201
LANFLYNV	8	Unmodified	_LANFLYNV_					0	0	0		ENST00000494601.5_1_2:172848237-172848321:+|nuORF	ENST00000494601.5_1_2:172848237-172848321:+|nuORF	ENST00000494601.5_1_2:172848237-172848321:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.77301025390625	2	477.258185	952.501818	-0.63398	-0.00030257	0.51661	0.00024656	-0.11736	-5.6012E-05	477.2582489036952	73.47	1.0106	70.074	69.64	70.65	-3.3961					33	20	3	0	0	0	0.028476	1	5743	5743		33.516	0	1	123940			27789	12758	22767	22794	31070	31070					0.023666863858124998
LANGQTKVL	9	Unmodified	_LANGQTKVL_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440216-145440639:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	OvCa99_classI_Rep5	1	472.2837219238281	2	472.282192	942.549831	-0.22815	-0.00010775	0.25625	0.00012102	0.028101	1.3271E-05	472.282179264154	53.99	1.1172	53.99	53.774	54.891	0					52	26	4	0	0	0	0.045281	2	4322	4322;4351		122.18	28.17	1	5750100			27790	9525	22768	22795	31071;31072	31071					0.0762576030585933
LANIGPLLVT	10	Unmodified	_LANIGPLLVT_					0	0	0		nc|ENSG00000101276|Q9NQ40-2|SLC52A3;ENSG00000101276|ENST00000645534|SLC52A3	nc|ENSG00000101276|Q9NQ40-2|SLC52A3	nc|ENSG00000101276|Q9NQ40-2|SLC52A3	MSMS	OvCa9_classI_Rep4_	4	505.8163757324219	2	505.815867	1009.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.04	1	107.32	106.82	107.82	-1.7256								0	0	0	0.084954	1	9998	9998		82.241	2.7895	1				27791	2158	22769	22796	31073	31073					0.11275790516799589
LANILVNSPKV	11	Unmodified	_LANILVNSPKV_					0	0	0			REV__nc|ENSG00000108984|P52564-2|MAP2K6	REV__nc|ENSG00000108984|P52564-2|MAP2K6	MULTI-MSMS	OvCa9_classI_Rep3	3	584.3565063476562	2	584.358431	1166.70231	-4.6254	-0.0027029	1.1397	0.00066599	-3.4857	-0.0020369	584.3589865391973	145.25	4.5766	144.28	142.9	147.48	-0.97299					233	91	4	0	0	0	0.69808	1	12169	12169		30.318	1.1477	1	156220	+		27792	17913	22770	22797	31074	31074					0.12562535982578993
LANLQHLL	8	Unmodified	_LANLQHLL_					0	0	0			REV__ENSG00000113328|ENST00000340828|CCNG1	REV__ENSG00000113328|ENST00000340828|CCNG1	MULTI-MSMS	OvCa9_classI_Rep4_	4	461.280517578125	2	461.279452	920.544351	-0.77821	-0.00035897	0.44539	0.00020545	-0.33282	-0.00015352	461.2795100457454	77.329	1.8276	74.512	74.145	75.973	-2.8165					85	37	3	0	0	0	0.35894	1	6219	6219		96.048	21.531	1	1290900	+		27793	18146	22771	22798	31075	31075					0.08090081514046688
LANNLNLKL	9	Unmodified	_LANNLNLKL_					0	0	0		tr|A0A553SIZ7|A0A553SIZ7_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15800PE=4SV=1	tr|A0A553SIZ7|A0A553SIZ7_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15800PE=4SV=1	tr|A0A553SIZ7|A0A553SIZ7_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15800PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	506.81011962890625	2	506.811116	1011.60768	-1.1259	-0.00057063	0.32757	0.00016601	-0.79835	-0.00040461	506.81130069607957	99.678	3.3722	98.848	98.219	101.59	-0.83051					157	66	4	0	0	0	0.079296	1	9093	9093		102.77	6.9582	1	2351400			27794	33445	22772	22799	31076	31076					0.10234022231270501
LANNLNLKL	9	Unmodified	_LANNLNLKL_					0	0	0		tr|A0A553SIZ7|A0A553SIZ7_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15800PE=4SV=1	tr|A0A553SIZ7|A0A553SIZ7_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15800PE=4SV=1	tr|A0A553SIZ7|A0A553SIZ7_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15800PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	506.81109619140625	2	506.811116	1011.60768	-1.285	-0.00065125	-0.29635	-0.00015019	-1.5813	-0.00080144	506.8109472666925	100.58	3.0909	98.975	98.659	101.75	-1.6053					152	59	4	0	0	0	0.11171	4	6844	6844;6856;6886;6913		94.006	1.8158	1	2966100			27795	33445	22772	22799	31077;31078;31079;31080	31077					0.10234022231270501
LANNLNLKL	9	Unmodified	_LANNLNLKL_					0	0	0		tr|A0A553SIZ7|A0A553SIZ7_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15800PE=4SV=1	tr|A0A553SIZ7|A0A553SIZ7_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15800PE=4SV=1	tr|A0A553SIZ7|A0A553SIZ7_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15800PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.8114013671875	2	506.811116	1011.60768	-0.91945	-0.00046599	-1.1845	-0.0006003	-2.1039	-0.0010663	506.81048510289196	101.22	3.3613	98.954	98.29	101.65	-2.2665					172	65	4	0	0	0	0.071436	1	9092	9092		106.42	0	1	2669900			27796	33445	22772	22799	31081	31081					0.10234022231270501
LANRALVSK	9	Unmodified	_LANRALVSK_					0	0	0			REV__ENSG00000166268|ENST00000552032|MYRFL	REV__ENSG00000166268|ENST00000552032|MYRFL	MULTI-MSMS	OvCa9_classI_Rep3	3	486.30462646484375	2	486.303458	970.592364	0.86253	0.00041945	2.6071	0.0012679	3.4697	0.0016873	486.3047324036629	126.22	3.5173	125.15	124.71	128.23	-1.0715					158	68	5	0	0	0	0.21231	2	9868	9868;9949		74.255	13.283	1	3175900	+		27797	21172	22773	22800	31082;31083	31082					0.10589155434081476
LANRLNSLS	9	Unmodified	_LANRLNSLS_					0	0	0		tr|A0A553SQB5|A0A553SQB5_NIACIProtein-glutamatemethylesterase/protein-glutamineglutaminaseOS=NialliacirculansOX=1397GN=cheBPE=3SV=1	tr|A0A553SQB5|A0A553SQB5_NIACIProtein-glutamatemethylesterase/protein-glutamineglutaminaseOS=NialliacirculansOX=1397GN=cheBPE=3SV=1	tr|A0A553SQB5|A0A553SQB5_NIACIProtein-glutamatemethylesterase/protein-glutamineglutaminaseOS=NialliacirculansOX=1397GN=cheBPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	494.2861328125	2	494.282723	986.550893	-0.18377	-9.0836E-05	3.6331	0.0017958	3.4493	0.001705	494.2844598093376	56.812	1.0682	56.812	56.498	57.566	0					70	24	4	0	0	0	0.21231	1	4770	4770		74.255	2.9593	1	11090000			27798	34142	22774	22801	31084	31084					0.057079746747604077
LANRRDEH	8	Unmodified	_LANRRDEH_					0	0	0			REV__SPHKAP|p.T374R|1|0.05|ENSG00000153820|chr2:228019733-228019733|G/C|missense_variant	REV__SPHKAP|p.T374R|1|0.05|ENSG00000153820|chr2:228019733-228019733|G/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.8091735839844	2	505.759946	1009.50534	-0.46522	-0.00023529	2.7491	0.0013904	2.2839	0.0011551	506.26268744903604	73.166	0.51924	70.766	70.534	71.054	-2.3999					12	9	2	0	0	0	0.028476	1	5935	5935		58.782	22.335	1	12653	+		27799	29448	22775	22802	31085	31085					0.000967492123777447
LANVRIPSV	9	Unmodified	_LANVRIPSV_					0	0	0			REV__ADAMTS9|p.T768Lfs*29|1|0.04|ENSG00000163638|chr3:64631542-64631542|T/-|frameshift_variant	REV__ADAMTS9|p.T768Lfs*29|1|0.04|ENSG00000163638|chr3:64631542-64631542|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	484.7987060546875	2	484.798009	967.581465	-0.83208	-0.00040339	0.012931	6.2689E-06	-0.81914	-0.00039712	484.7981247180956	97.675	2.4444	95.916	95.105	97.55	-1.7595					95	47	4	0	0	0	0.35444	1	6475	6475		56.721	3.3696	1	1805800	+		27800	15566	22776	22803	31086	31086					0.09637753059803345
LAPAARLLLAG	11	Unmodified	_LAPAARLLLAG_					0	0	0		nc|ENSG00000171603|O94985-2|CLSTN1;ENSG00000171603|ENST00000377298|CLSTN1;CLSTN1|p.S509Wfs*13|1|0.11|ENSG00000171603|chr1:9737548-9737549|-/CC|frameshift_variant	nc|ENSG00000171603|O94985-2|CLSTN1	nc|ENSG00000171603|O94985-2|CLSTN1	MULTI-MSMS	OvCa9_classI_Rep2	2	533.339599609375	2	533.342584	1064.67061	-5.4005	-0.0028803	1.293	0.00068962	-4.1075	-0.0021907	533.3431631989303	156.44	1.0857	156.21	155.92	157	-0.22696					71	26	4	0	0	0	0.72493	1	15937	15937		16.473	0	1	260540			27801	7217	22777	22804	31087	31087					0.1408658801931324
LAPADIIPPR	10	Unmodified	_LAPADIIPPR_					0	0	0			REV__CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	REV__CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	531.816162109375	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.75313	1	13998	13998		24.519	1.4767	1	166960	+		27802	15732	22778	22805	31088	31088					0.09498308748311501
LAPAIEKIGPK	11	Unmodified	_LAPAIEKIGPK_					0	0	0			REV__tr|A0A7D6VQF1|A0A7D6VQF1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01880PE=3SV=1	REV__tr|A0A7D6VQF1|A0A7D6VQF1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01880PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	568.8534545898438	2	568.855524	1135.69649	-7.0365	-0.0040027	3.4991	0.0019905	-3.5374	-0.0020123	568.857375140279	161.4	1.8223	160.03	159.69	161.51	-1.3692					107	37	5	0	0	0	0.71498	1	14025	14025		24.519	0	1	827460	+		27803	31320	22779	22806	31089	31089					0.1340743747093711
LAPALALLRL	10	Unmodified	_LAPALALLRL_					0	0	0			REV__ENST00000217289.8_1_20:6103562-6103802:-|nuORF	REV__ENST00000217289.8_1_20:6103562-6103802:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	525.85498046875	2	525.855327	1049.6961	0.33138	0.00017426	-0.66182	-0.00034802	-0.33044	-0.00017376	525.85482904703	128.29	1.7807	127.2	126.73	128.51	-1.0933					95	35	4	0	0	0	0.76627	1	10136	10136		23.042	4.7181	1	248690	+		27804	23729	22780	22807	31090	31090					0.17324062541752028
LAPALEHKAL	10	Unmodified	_LAPALEHKAL_					0	0	0			REV__ENSG00000135723|ENST00000258201|FHOD1	REV__ENSG00000135723|ENST00000258201|FHOD1	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8165893554688	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.67931	1	11539	11539		32.812	7.2384	1	178650	+		27805	19315	22781	22808	31091	31091					0.09498308748334239
LAPALHKVTV	10	Unmodified	_LAPALHKVTV_					0	0	0		PET112-FAM160A1|1|fusion;ENSG00000164142|ENST00000435205|FHIP1A	PET112-FAM160A1|1|fusion	PET112-FAM160A1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.8280029296875	2	524.829309	1047.64407	-5.767	-0.0030267	1.6173	0.0008488	-4.1497	-0.0021779	524.8300427930473	156.94	1.6972	155.39	155.01	156.7	-1.545					136	47	6	0	0	0	0.73378	1	15490	15490		26.693	2.4902	1	1010500			27806	15490	22782	22809	31092	31092					0.12214899127957324
LAPALVPVLF	10	Unmodified	_LAPALVPVLF_					0	0	0			REV__PET112-FAM160A1|1|fusion	REV__PET112-FAM160A1|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.3118286132812	2	520.331153	1038.64775	-0.89866	-0.0004676	2.0735	0.0010789	1.1749	0.00061133	520.3330146211435	86.042	0.65037	83.822	83.235	83.885	-2.2204					14	12	2	0	0	0	0.027007	1	5028	5028		26.796	13.837	1	17919	+		27807	29287	22783	22810	31093	31093					0.12997568901823797
LAPDEVLATL	10	Unmodified	_LAPDEVLATL_					0	0	0			REV__tr|A0A553SQ18|A0A553SQ18_NIACIUPF0354proteinCEQ21_17550OS=NialliacirculansOX=1397GN=CEQ21_17550PE=3SV=1	REV__tr|A0A553SQ18|A0A553SQ18_NIACIUPF0354proteinCEQ21_17550OS=NialliacirculansOX=1397GN=CEQ21_17550PE=3SV=1	MSMS	OvCa9_classI_Rep4_	4	521.2918701171875	2	521.294965	1040.57538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.29	1	124.88	124.38	125.38	-1.4143								0	0	0	0.15062	1	12019	12019		40.778	0	1		+		27808	30597	22784	22811	31094	31094					0.056711900376285485
LAPERPTLLL	10	Unmodified	_LAPERPTLLL_					0	0	0			REV__YY1AP1-ARHGEF2|2|fusion	REV__YY1AP1-ARHGEF2|2|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	561.8468017578125	2	561.847699	1121.68084	-3.2197	-0.001809	-0.49496	-0.00027809	-3.7146	-0.002087	561.8472802195274	152.47	1.17	152.24	151.83	153	-0.22697					70	23	4	0	0	0	0.83261	1	15544	15544		14.865	3.3539	1	142980	+		27809	32762	22785	22812	31095	31095					0.12487150953893433
LAPFAQSVR	9	Unmodified	_LAPFAQSVR_					0	0	0			REV__chr21:45492713-45497607|95|23.56|0.1|7.86|+|1|COL18A1,None|1	REV__chr21:45492713-45497607|95|23.56|0.1|7.86|+|1|COL18A1,None|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.24853515625	2	494.782359	987.550165	1.2262	0.00060672	-0.25945	-0.00012837	0.9668	0.00047836	494.78249641265046	97.062	0.74953	94.636	94.42	95.169	-2.4256					20	14	2	0	0	0	0.027433	1	8568	8568		38.806	1.647	1	44758	+		27810	16033	22786	22813	31096	31096					0.05589180025708629
LAPFAQSVR	9	Unmodified	_LAPFAQSVR_					0	0	0			REV__chr21:45492713-45497607|95|23.56|0.1|7.86|+|1|COL18A1,None|1	REV__chr21:45492713-45497607|95|23.56|0.1|7.86|+|1|COL18A1,None|1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	494.782359	987.550165	0.18673	9.2391E-05	-0.91301	-0.00045174	-0.72628	-0.00035935	494.7820410526226	95.568	0.54535	94.54	94.268	94.813	-1.0281	-0.048022	-0.00031661	NaN	38.806	16	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36072	+		27811	16033	22786	22813							0.05589180025708629
LAPFRGKEL	9	Unmodified	_LAPFRGKEL_					0	0	0		CHDH|p.C514Hfs*3|1|0.4|ENSG00000016391|chr3:53818021-53818022|CA/-|frameshift_variant;ENSG00000016391|ENST00000315251|CHDH	CHDH|p.C514Hfs*3|1|0.4|ENSG00000016391|chr3:53818021-53818022|CA/-|frameshift_variant	CHDH|p.C514Hfs*3|1|0.4|ENSG00000016391|chr3:53818021-53818022|CA/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.2708740234375	2	515.805834	1029.59712	-0.11927	-6.152E-05	4.0915	0.0021104	3.9722	0.0020489	516.3072098078851	102.04	1.6727	100.52	100.11	101.78	-1.5211					55	31	4	0	0	0	0.027462	1	7128	7128		20.947	0	1	64434			27812	232	22787	22814	31097	31097					0.08350039576839663
LAPGGTVML	9	Unmodified	_LAPGGTVML_					0	0	0			REV__nc|ENSG00000182095|O15417-2|TNRC18	REV__nc|ENSG00000182095|O15417-2|TNRC18	MULTI-SECPEP	OvCa9_classI_Rep2	2	429.9303894042969	2	429.741314	857.468075	0.64544	0.00027737	0.91267	0.00039221	1.5581	0.00066958	429.7427864998346	41.925	0.59187	39.215	39.029	39.621	-2.7097					15	11	2	0	0	0	0.027462	1	2239	2239		25.45	1.2474	1	17258	+		27813	22262	22788	22815	31098	31098					0.033639416224104934
LAPGLLLL	8	Unmodified	_LAPGLLLL_					0	0	0			REV__ENST00000528368.2_1_11:119209668-119209890:-|nuORF	REV__ENST00000528368.2_1_11:119209668-119209890:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	405.279541015625	2	405.278389	808.542226	1.7928	0.00072657	-0.96277	-0.00039019	0.82999	0.00033638	405.27799811906704	161.03	2.9084	161.03	159.62	162.53	0					81	57	2	0	0	0	0.69862	1	18872	18872		43.626	0	1	75161	+		27814	27166	22789	22816	31099	31099					0.13029652776242528
LAPGRLNALL	10	Unmodified	_LAPGRLNALL_					0	0	0			REV__ENSG00000237988|ENST00000641137|OR2I1P	REV__ENSG00000237988|ENST00000641137|OR2I1P	MULTI-MSMS	OvCa9_classI_Rep2	2	519.32666015625	2	519.326934	1036.63931	0.91528	0.00047533	-0.11424	-5.9329E-05	0.80104	0.000416	519.3263854293617	112.97	1.2349	112.84	112.62	113.86	-0.12174					63	24	3	0	0	0	0.41846	1	10735	10735		65.803	10.299	1	264040	+		27815	23425	22790	22817	31100	31100					0.12246014985225884
LAPKGTPGPL	10	Unmodified	_LAPKGTPGPL_					0	0	0			REV__ENSG00000198700|ENST00000361565|IPO9	REV__ENSG00000198700|ENST00000361565|IPO9	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.7860107421875	2	475.78711	949.559667	0.94635	0.00045026	-1.4711	-0.00069993	-0.52474	-0.00024966	475.7862320617159	113.57	1.4959	112.13	111.66	113.15	-1.4461					55	29	3	0	0	0	0.52439	1	10541	10541		51.193	3.2771	1	158300	+		27816	23046	22791	22818	31101	31101					0.08286948311229025
LAPLFLGL	8	Unmodified	_LAPLFLGL_					0	0	0			REV__ENST00000409780.5_1_2:112656225-112702538:+|nuORF	REV__ENST00000409780.5_1_2:112656225-112702538:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	422.9256286621094	2	422.270564	842.526576	-0.48141	-0.00020329	-3.7823	-0.0015972	-4.2637	-0.0018004	422.2689728599654	39.508	0.84583	36.581	36.445	37.291	-2.9264					23	16	2	0	0	0	0.028476	1	1667	1667		10.185	0	1	31148	+		27817	20328	22792	22819	31102	31102					0.09901366259180122
LAPLGCIHAA	10	Unmodified	_LAPLGCIHAA_					0	0	0		nc|ENSG00000023041|Q9H6R6-2|ZDHHC6;ENSG00000023041|ENST00000369405|ZDHHC6	nc|ENSG00000023041|Q9H6R6-2|ZDHHC6	nc|ENSG00000023041|Q9H6R6-2|ZDHHC6	MULTI-MSMS	OvCa9_classI_Rep2	2	483.2679443359375	2	483.265487	964.516422	2.2911	0.0011072	1.6639	0.00080412	3.955	0.0019113	483.26610670592925	27.345	0.47915	24.635	24.515	24.994	-2.7097					19	10	3	0	0	0	0.73286	1	464	464		26.796	3.7536	1	26008			27818	1034	22793	22820	31103	31103					0.0327443526227853
LAPLKFLYP	9	Unmodified	_LAPLKFLYP_					0	0	0			REV__ENSG00000176809|ENST00000584306|LRRC37A3	REV__ENSG00000176809|ENST00000584306|LRRC37A3	MULTI-MSMS	OvCa99_classI_Rep5	1	531.3246459960938	2	531.323328	1060.6321	1.0459	0.0005557	2.9521	0.0015685	3.998	0.0021242	531.3250445466404	142.74	0.54454	142.74	142.39	142.93	0					18	10	2	0	0	0	0.44294	1	16679	16679		47.916	1.9434	1	69131	+		27819	21963	22794	22821	31104	31104					0.10421282384777442
LAPLPHEVTQL	11	Unmodified	_LAPLPHEVTQL_					0	0	0		ENSG00000174705|ENST00000311601|SH3PXD2B	ENSG00000174705|ENST00000311601|SH3PXD2B	ENSG00000174705|ENST00000311601|SH3PXD2B	MULTI-MSMS	OvCa99_classI_Rep5	1	406.56915283203125	3	406.567801	1216.68157	1.1463	0.00046603	-0.96603	-0.00039276	0.18022	7.3272E-05	406.56732673923227	58.5	1.2769	58.5	58.027	59.304	0					58	21	4	0	0	0	0.56391	1	4964	4964		47.96	3.3201	1	3069900			27820	7483	22795	22822	31105	31105					0.0818994560295323
LAPLSTIQAD	10	Unmodified	_LAPLSTIQAD_					0	0	0			REV__ENSG00000058453|ENST00000375541|CROCC	REV__ENSG00000058453|ENST00000375541|CROCC	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.8255615234375	2	514.784764	1027.55498	0.20937	0.00010778	0.90939	0.00046814	1.1188	0.00057592	514.7853617209308	66.717	1.4871	64.021	63.716	65.203	-2.6958					39	29	2	0	0	0	0.026665	1	5269	5269		51.335	0	1	99050	+		27821	16728	22796	22823	31106	31106					0.04230019377814642
LAPMPLFL	8	Unmodified	_LAPMPLFL_					0	0	0			REV__ENST00000603027.5_2_10:75563086-75563657:-|nuORF	REV__ENST00000603027.5_2_10:75563086-75563657:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	451.2668151855469	2	451.264425	900.514297	-0.25133	-0.00011342	4.1755	0.0018843	3.9242	0.0017708	451.26616946408643	88.666	1.1235	86.535	86.265	87.388	-2.1309					67	22	4	0	0	0	0.58426	1	5408	5408		67.327	12.433	1	605850	+		27822	28048	22797	22824	31107	31107					0.0600600652447838
LAPMPLFL	8	Unmodified	_LAPMPLFL_					0	0	0			REV__ENST00000603027.5_2_10:75563086-75563657:-|nuORF	REV__ENST00000603027.5_2_10:75563086-75563657:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	451.26678466796875	2	451.264425	900.514297	0.55964	0.00025254	3.289	0.0014842	3.8487	0.0017368	451.2657863867747	89.158	1.2365	86.555	86.286	87.523	-2.6027					47	24	2	0	0	0	0.58426	1	7666	7666		67.327	12.433	1	573870	+		27823	28048	22797	22824	31108	31108					0.0600600652447838
LAPPRNTVL	9	Unmodified	_LAPPRNTVL_					0	0	0			REV__ADCY4|p.T926Afs*10|1|0.07|ENSG00000129467|chr14:24319388-24319394|CGATGGT/-|frameshift_variant	REV__ADCY4|p.T926Afs*10|1|0.07|ENSG00000129467|chr14:24319388-24319394|CGATGGT/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.7304382324219	2	490.798009	979.581465	-0.62481	-0.00030665	0.18264	8.9641E-05	-0.44216	-0.00021701	490.7976333614664	45.9	1.0954	42.827	42.457	43.552	-3.0724					30	20	2	0	0	0	0.027433	1	2331	2331		60.972	7.6205	1	29990	+		27824	15570	22798	22825	31109	31109					0.09085753059787294
LAPPVTLGT	9	Unmodified	_LAPPVTLGT_					0	0	0			REV__nc|ENSG00000161681|Q9Y566-3|SHANK1	REV__nc|ENSG00000161681|Q9Y566-3|SHANK1	MULTI-MSMS	OvCa9_classI_Rep3	3	434.7591247558594	2	434.760561	867.506569	-1.3377	-0.00058158	-1.6289	-0.00070818	-2.9666	-0.0012898	434.7597358333452	139.11	1.8707	138.05	137.63	139.51	-1.0595					91	37	4	0	0	0	0.59983	1	11387	11387		31.955	1.4512	1	610970	+		27825	20703	22799	22826	31110	31110					0.06751570528592765
LAPQLWQGFL	10	Unmodified	_LAPQLWQGFL_					0	0	0		tr|A0A553SQA8|A0A553SQA8_NIACITransglycosylaseSLTdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24400PE=4SV=1	tr|A0A553SQA8|A0A553SQA8_NIACITransglycosylaseSLTdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24400PE=4SV=1	tr|A0A553SQA8|A0A553SQA8_NIACITransglycosylaseSLTdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24400PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.8236694335938	2	586.826766	1171.63898	-2.8595	-0.001678	-2.3802	-0.0013968	-5.2397	-0.0030748	586.8252260558515	149.49	1.5706	148.05	147.61	149.18	-1.4344					87	31	4	0	0	0	0.7759	1	14766	14766		21.96	2.6972	1	272440			27826	34138	22800	22827	31111	31111					0.06002595265385935
LAPRLLALL	9	Unmodified	_LAPRLLALL_					0	0	0			REV__nc|ENSG00000033100|Q9P2E5-2|CHPF2	REV__nc|ENSG00000033100|Q9P2E5-2|CHPF2	MULTI-MSMS	OvCa9_classI_Rep2	2	490.33685302734375	2	490.33677	978.658987	0.31976	0.00015679	-1.1553	-0.00056648	-0.83553	-0.00040969	490.3362879264998	135.18	3.9777	134.96	134.64	138.62	-0.22697					225	81	5	0	0	0	0.65476	1	13589	13589		25.45	0	1	7114000	+		27827	16593	22801	22828	31112	31112					0.16880390995981998
LAPRLLALL	9	Unmodified	_LAPRLLALL_					0	0	0			REV__nc|ENSG00000033100|Q9P2E5-2|CHPF2	REV__nc|ENSG00000033100|Q9P2E5-2|CHPF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.3365783691406	2	490.33677	978.658987	2.3125	0.0011339	-3.376	-0.0016554	-1.0635	-0.00052147	490.335203673426	137.13	5.8682	135.59	135.18	141.05	-1.5437					314	118	5	0	0	0	0.36502	1	13347	13347		55.504	0	1	8417000	+		27828	16593	22801	22828	31113	31113					0.16880390995981998
LAPRNSSLRLT	11	Unmodified	_LAPRNSSLRLT_					0	0	0		nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3;ENSG00000105339|ENST00000519811|DENND3;ENST00000520482.1_1_8:142168222-142185717:+|nuORF	nc|ENSG00000105339|A2RUS2-2|DENND3	nc|ENSG00000105339|A2RUS2-2|DENND3	MULTI-SECPEP	OvCa9_classI_Rep2	2	409.8805236816406	3	409.910449	1226.70952	-0.19493	-7.9902E-05	-0.4437	-0.00018188	-0.63863	-0.00026178	410.24410974516013	52.048	0.24831	49.235	49.146	49.394	-2.8129					6	4	2	0	0	0	0.025759	1	3459	3459		44.639	28.719	1	20852			27829	2443	22802	22829	31114	31114					0.10523268583028766
LAPSIILLTL	10	Unmodified	_LAPSIILLTL_					0	0	0		tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	527.3489990234375	2	527.349543	1052.68453	-1.2054	-0.00063568	1.7287	0.00091165	0.52333	0.00027598	527.3502416173696	99.97	2.0822	99.14	98.617	100.7	-0.83051					105	41	4	0	0	0	0.67931	1	9133	9133		32.812	9.7699	1	314340			27830	35116	22803	22830	31115	31115					0.1602982072774921
LAPSKERR	8	Unmodified	_LAPSKERR_					0	0	0			REV__nc|ENSG00000143494|Q86V25-6|VASH2	REV__nc|ENSG00000143494|Q86V25-6|VASH2	MULTI-MSMS	OvCa9_classI_Rep2	2	478.7857971191406	2	478.785433	955.556313	-2.4635	-0.0011795	2.3243	0.0011128	-0.13927	-6.6679E-05	478.7864521794397	145.79	1.5385	145.57	144.98	146.52	-0.22696					81	30	4	0	0	0	0.74229	1	14673	14673		30.504	0	1	230950	+		27831	19847	22804	22831	31116	31116					0.07675698257230579
LAPSKKKP	8	Unmodified	_LAPSKKKP_					0	0	0			REV__ENST00000309988.8_1_2:95719231-95719417:+|nuORF	REV__ENST00000309988.8_1_2:95719231-95719417:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.7720031738281	2	434.78437	867.554188	-0.43155	-0.00018763	4.2146	0.0018325	3.7831	0.0016448	434.7864304893576	42.275	0.50192	39.295	39.064	39.566	-2.9804					19	9	3	0	0	0	0.028476	1	1975	1975		29.15	8.6677	1	46170	+		27832	24331	22805	22832	31117	31117					0.11511269519417056
LAPSKKKP	8	Unmodified	_LAPSKKKP_					0	0	0			REV__ENST00000309988.8_1_2:95719231-95719417:+|nuORF	REV__ENST00000309988.8_1_2:95719231-95719417:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.7712097167969	2	434.78437	867.554188	-0.46416	-0.00020181	-1.0795	-0.00046935	-1.5437	-0.00067116	434.7836133400419	42.677	1.2072	39.697	39.461	40.668	-2.9804					47	22	3	0	0	0	0.028476	1	2025	2025		24.203	0	1	221050	+		27833	24331	22805	22832	31118	31118					0.11511269519417056
LAPSPFMLQR	10	Oxidation (M)	_LAPSPFM(Oxidation (M))LQR_		LAPSPFM(1)LQR		LAPSPFM(49)LQR	0	0	1			REV__ENST00000592414.1_1_19:3053819-3054095:-|nuORF	REV__ENST00000592414.1_1_19:3053819-3054095:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	588.31689453125	2	588.315709	1174.61686	-0.86515	-0.00050898	3.563	0.0020962	2.6979	0.0015872	588.3178156551718	47.322	1.787	44.612	44.142	45.929	-2.7097					114	35	4	0	0	0	0.53885	1	2935	2935		49.442	8.6634	1	1251100	+		27834	27951	22806	22833	31119	31119		621			0.03654047525287751
LAPSSAPPT	9	Unmodified	_LAPSSAPPT_					0	0	0			REV__ENST00000392845.7_1_3:155572024-155572093:-|nuORF	REV__ENST00000392845.7_1_3:155572024-155572093:-|nuORF	MSMS	OvCa99_classI_Rep5	1	420.732177734375	2	420.726718	839.438883	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.82	1	134.82	134.32	135.32	0								0	0	0	0.18309	1	15698	15698		30.504	1.3541	1		+		27835	25267	22807	22834	31120	31120					0.01274120597770434
LAPTVFPTAV	10	Unmodified	_LAPTVFPTAV_					0	0	0			REV__ENST00000510052.5_1_5:10227736-10249985:-|nuORF	REV__ENST00000510052.5_1_5:10227736-10249985:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	508.29229736328125	2	508.294768	1014.57498	-0.83799	-0.00042594	-3.3015	-0.0016781	-4.1394	-0.0021041	508.29289679219295	26.784	0.45003	26.784	26.642	27.092	0					14	8	2	0	0	0	0.58282	1	731	731		44.117	1.6423	1	103530	+		27836	20201	22808	22835	31121	31121					0.06827815108408686
LAPVFLLRWFY	11	Unmodified	_LAPVFLLRWFY_					0	0	0		nc|ENSG00000116138|Q9Y2G8-2|DNAJC16;ENSG00000116138|ENST00000375847|DNAJC16;ENST00000483270.1_1_1:15886792-15891842:+|nuORF	nc|ENSG00000116138|Q9Y2G8-2|DNAJC16	nc|ENSG00000116138|Q9Y2G8-2|DNAJC16	MULTI-MSMS	OvCa9_classI_Rep2	2	475.608154296875	3	475.607819	1423.80163	0.21695	0.00010318	0.43319	0.00020603	0.65014	0.00030921	475.6080820872315	80.588	3.0505	78.893	78.222	81.273	-1.6951					178	59	5	0	0	0	0.69099	1	6837	6837		32.751	2.1817	1	4080000			27837	3158	22809	22836	31122	31122					0.1066797866737943
LAPVLRWL	8	Unmodified	_LAPVLRWL_					0	0	0			REV__ENST00000380138.3_1_5:83476291-83680146:-|nuORF	REV__ENST00000380138.3_1_5:83476291-83680146:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	484.30828857421875	2	484.308013	966.601472	0.93371	0.0004522	-0.79171	-0.00038343	0.142	6.877E-05	484.3074830204417	129.68	1.0861	129.46	129.12	130.21	-0.22696					46	21	4	0	0	0	0.73288	1	12724	12724		35.201	0	1	157450	+		27838	25173	22810	22837	31123	31123					0.11683548790404075
LAPYFDMVSL	10	Unmodified	_LAPYFDMVSL_					0	0	0			REV__tr|A0A553SRI3|A0A553SRI3_NIACID-alanine--D-alanylcarrierproteinligaseOS=NialliacirculansOX=1397GN=dltAPE=3SV=1	REV__tr|A0A553SRI3|A0A553SRI3_NIACID-alanine--D-alanylcarrierproteinligaseOS=NialliacirculansOX=1397GN=dltAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.790771484375	2	578.291368	1154.56818	-6.4834	-0.0037493	2.5464	0.0014725	-3.937	-0.0022767	578.2924756503293	159.15	2.0345	157.57	156.14	158.17	-1.5858					77	57	2	0	0	0	0.7759	1	15718	15718		21.96	0	1	24594	+		27839	30731	22811	22838	31124	31124					-0.0029186583444698044
LAQARDMIFQ	10	Unmodified	_LAQARDMIFQ_					0	0	0			REV__ENSG00000105576|ENST00000425528|TNPO2	REV__ENSG00000105576|ENST00000425528|TNPO2	MULTI-MSMS	OvCa99_classI_Rep5	1	596.8115234375	2	596.81079	1191.60703	2.3001	0.0013727	-3.2874	-0.0019619	-0.98723	-0.00058919	596.8087943125465	76.386	1.5055	76.386	75.956	77.461	0					112	36	6	0	0	0	0.6349	1	7632	7632		37.812	2.6595	1	6926100	+		27840	17738	22812	22839	31125	31125					0.01888859519908692
LAQELYSSGLL	11	Unmodified	_LAQELYSSGLL_					0	0	0		ENSG00000102547|ENST00000409308|CAB39L	ENSG00000102547|ENST00000409308|CAB39L	ENSG00000102547|ENST00000409308|CAB39L	MULTI-MSMS	OvCa99_classI_Rep5	1	597.3268432617188	2	597.324254	1192.63395	2.2311	0.0013327	0.064158	3.8323E-05	2.2953	0.001371	597.3243300812327	100.25	0.58192	100.25	100.03	100.61	0					31	13	3	0	0	0	0.29406	1	11108	11108		68.846	8.7279	1	1052800			27841	2243	22813	22840	31126	31126					0.04534246612115567
LAQELYSSGLL	11	Unmodified	_LAQELYSSGLL_					0	0	0		ENSG00000102547|ENST00000409308|CAB39L	ENSG00000102547|ENST00000409308|CAB39L	ENSG00000102547|ENST00000409308|CAB39L	MULTI-MATCH	OvCa9_classI_Rep2	2		2	597.324254	1192.63395	-1.5694	-0.00093746	0.44751	0.00026731	-1.1219	-0.00067015	597.3251420341346	100.93	0.59509	100.17	99.973	100.57	-0.76401	-0.043077	0.00040423	NaN	68.846	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9774.2			27842	2243	22813	22840							0.04534246612115567
LAQGAVGLLSP	11	Unmodified	_LAQGAVGLLSP_					0	0	0		ENSG00000164946|ENST00000380880|FREM1;nc|ENSG00000164946|Q5H8C1-2|FREM1	ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.30322265625	2	513.303124	1024.5917	-0.6359	-0.00032641	0.10313	5.2935E-05	-0.53277	-0.00027347	513.3031570189453	104.08	2.9198	101.97	101.54	104.46	-2.1192					129	56	4	0	0	0	0.26031	1	9466	9466		71.877	7.6702	1	1348000			27843	6504	22814	22841	31127	31127					0.08038315994394907
LAQGDRTL	8	Unmodified	_LAQGDRTL_					0	0	0		tr|A0A7D6VNK8|A0A7D6VNK8_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13305PE=4SV=1	tr|A0A7D6VNK8|A0A7D6VNK8_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13305PE=4SV=1	tr|A0A7D6VNK8|A0A7D6VNK8_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13305PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	437.54498291015625	2	437.243067	872.47158	0.19908	8.7048E-05	-0.09634	-4.2124E-05	0.10274	4.4924E-05	437.24289916961663	41.743	0.65025	41.743	41.505	42.156	0					32	14	3	0	0	0	0.028476	1	2652	2652		34.173	0	1	767510			27844	34711	22815	22842	31128	31128					0.03024327720618203
LAQGPSLTRA	10	Unmodified	_LAQGPSLTRA_					0	0	0			REV__nc|ENSG00000163218|Q96LB8-2|PGLYRP4	REV__nc|ENSG00000163218|Q96LB8-2|PGLYRP4	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.2930908203125	2	507.290548	1012.56654	0.4756	0.00024127	3.3837	0.0017165	3.8593	0.0019578	507.29226202220127	110.52	2.2631	108.91	108.28	110.54	-1.6011					95	42	4	0	0	0	0.28845	1	10169	10169		82.241	7.9855	1	396390	+		27845	20818	22816	22843	31129	31129					0.060762611917994036
LAQHRPEVL	9	Unmodified	_LAQHRPEVL_					0	0	0			REV__EP400|p.P1343Qfs*17|1|0.1|ENSG00000183495|chr12:132017637-132017637|C/-|frameshift_variant	REV__EP400|p.P1343Qfs*17|1|0.1|ENSG00000183495|chr12:132017637-132017637|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8062744140625	2	531.806365	1061.59818	-0.91057	-0.00048425	3.617	0.0019236	2.7065	0.0014393	531.8082920504281	78.41	2.6713	76.671	76.301	78.972	-1.7398					132	52	4	0	0	0	0.33652	1	6550	6550		58.782	5.4305	1	952730	+		27846	28107	22817	22844	31130	31130					0.06984253945756791
LAQKQHLLLP	10	Unmodified	_LAQKQHLLLP_					0	0	0			REV__MAN1A2-TTF2|1|fusion	REV__MAN1A2-TTF2|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	580.85986328125	2	580.861141	1159.70773	-1.1634	-0.00067577	1.2543	0.0007286	0.090949	5.2829E-05	580.8617132618992	109.08	1.2039	107.88	107.51	108.72	-1.1978					64	22	4	0	0	0	0.61209	1	7826	7826		40.573	4.9543	1	267670	+		27847	18322	22818	22845	31131	31131					0.13426259565085275
LAQLEHKN	8	Unmodified	_LAQLEHKN_					0	0	0			REV__ENST00000509141.5_1_16:29362993-29370594:+|nuORF	REV__ENST00000509141.5_1_16:29362993-29370594:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	475.79364013671875	2	476.764166	951.513779	0.48314	0.00023034	-4.4182	-0.0021065	-3.9351	-0.0018761	476.76186226347147	80.957	0.66805	78.634	78.389	79.057	-2.3226					30	12	3	0	0	0	0.028476	1	4465	4465		60.294	7.9948	1	59479	+		27848	26922	22819	22846	31132	31132					0.036083031289877
LAQLEHKN	8	Unmodified	_LAQLEHKN_					0	0	0			REV__ENST00000509141.5_1_16:29362993-29370594:+|nuORF	REV__ENST00000509141.5_1_16:29362993-29370594:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	476.764166	951.513779	-0.44823	-0.0002137	-3.4574	-0.0016484	-3.9056	-0.0018621	476.7624333823435	81.546	0.67736	78.836	78.641	79.318	-2.7106	0.10085	0.00046325	NaN	60.294	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57399	+		27849	26922	22819	22846							0.036083031289877
LAQLPHQAL	9	Unmodified	_LAQLPHQAL_					0	0	0		ENST00000529976.5_1_20:57288690-57289536:+|nuORF	ENST00000529976.5_1_20:57288690-57289536:+|nuORF	ENST00000529976.5_1_20:57288690-57289536:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	495.7911682128906	2	495.790184	989.565815	1.1123	0.00055149	0.86785	0.00043027	1.9802	0.00098176	495.79053571311687	79.124	0.60295	79.124	78.791	79.394	0					35	14	4	0	0	0	0.32337	1	8040	8040		60.294	0	1	4460200			27850	13281	22820	22847	31133	31133					0.0706146654274562
LAQLRAGPE	9	Unmodified	_LAQLRAGPE_					0	0	0			REV__ENSG00000100092|ENST00000649765|SH3BP1	REV__ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MSMS	OvCa99_classI_Rep5	1	477.77374267578125	2	477.771991	953.529429	2.4624	0.0011765	3.2085	0.0015329	5.6708	0.0027094	477.77352925286857	113.22	0.44597	113.22	112.97	113.42	0					16	9	2	0	0	0	0.31747	1	12925	12925		60.972	9.6365	1	206300	+		27851	17363	22821	22848	31134	31134					0.0508058964603606
LAQLRAGPE	9	Unmodified	_LAQLRAGPE_					0	0	0			REV__ENSG00000100092|ENST00000649765|SH3BP1	REV__ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	477.771991	953.529429	2.4624	0.0011765	3.2085	0.0015329	5.6708	0.0027094	477.77352925286857	113.22	0.44597	113.22	112.97	113.42	0	0	0	NaN	60.972	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206300	+		27852	17363	22821	22848							0.0508058964603606
LAQLRELL	8	Unmodified	_LAQLRELL_					0	0	0			REV__ENSG00000084073|ENST00000372759|ZMPSTE24	REV__ENSG00000084073|ENST00000372759|ZMPSTE24	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.28106689453125	2	478.300384	954.586216	0.82802	0.00039604	-0.87696	-0.00041945	-0.048945	-2.341E-05	478.29972750417795	97.821	0.71381	95.442	94.962	95.675	-2.3786					29	13	3	0	0	0	0.028476	1	8625	8625		35.618	11.416	1	75947	+		27853	17116	22822	22849	31135	31135					0.10710637202555517
LAQLRELL	8	Unmodified	_LAQLRELL_					0	0	0			REV__ENSG00000084073|ENST00000372759|ZMPSTE24	REV__ENSG00000084073|ENST00000372759|ZMPSTE24	MULTI-MATCH	OvCa9_classI_Rep2	2		2	478.300384	954.586216	0.014573	6.9702E-06	-0.31697	-0.00015161	-0.3024	-0.00014464	478.3002972533868	96.454	0.79253	95.426	94.963	95.756	-1.0281	-0.044157	-1.6669E-05	NaN	27.882	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71717	+		27854	17116	22822	22849							0.10710637202555517
LAQLRELL	8	Unmodified	_LAQLRELL_					0	0	0			REV__ENSG00000084073|ENST00000372759|ZMPSTE24	REV__ENSG00000084073|ENST00000372759|ZMPSTE24	MULTI-MATCH	OvCa9_classI_Rep3	3		2	478.300384	954.586216	-0.094125	-4.502E-05	0.19264	9.2141E-05	0.098517	4.7121E-05	478.300287560107	97.303	0.71257	95.543	95.105	95.818	-1.7595	0.072575	0.00047083	NaN	27.882	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105670	+		27855	17116	22822	22849							0.10710637202555517
LAQMKKNAI	9	Unmodified	_LAQMKKNAI_					0	0	0		ENST00000478554.5_1_1:244641263-244662323:+|nuORF	ENST00000478554.5_1_1:244641263-244662323:+|nuORF	ENST00000478554.5_1_1:244641263-244662323:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.79644775390625	2	508.799694	1015.58484	0.15989	8.1351E-05	-3.4058	-0.0017329	-3.2459	-0.0016515	508.79770880532556	111.59	1.4617	110.08	109.68	111.15	-1.5111					73	27	4	0	0	0	0.52083	1	10332	10332		40.573	1.3198	1	395290			27856	12494	22823	22850	31136	31136					0.07766679842154645
LAQNLLKLISN	11	Unmodified	_LAQNLLKLISN_					0	0	0		L1PA7_dup7105|chr8:140902960-140905176:-|1.928403484305532|0.1763547852274372|3.45|429.0|56|3|sense	L1PA7_dup7105|chr8:140902960-140905176:-|1.928403484305532|0.1763547852274372|3.45|429.0|56|3|sense	L1PA7_dup7105|chr8:140902960-140905176:-|1.928403484305532|0.1763547852274372|3.45|429.0|56|3|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	409.5879821777344	3	409.587084	1225.73942	1.9489	0.00079826	-0.69775	-0.00028579	1.2512	0.00051247	409.5866589829611	66.281	1.6712	63.335	62.959	64.63	-2.9459					68	32	4	0	0	0	0.71338	1	2706	2706		25.068	5.8051	1	144930			27857	14752	22824	22851	31137	31137					0.13558207528376442
LAQNNNSLL	9	Unmodified	_LAQNNNSLL_					0	0	0			REV__ENST00000413279.1_1_2:136269117-136269381:-|nuORF	REV__ENST00000413279.1_1_2:136269117-136269381:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	493.766357421875	2	493.766906	985.519259	0.035446	1.7502E-05	-0.50839	-0.00025103	-0.47295	-0.00023353	493.76662126445797	67.226	1.1895	64.565	63.95	65.139	-2.661					65	23	4	0	0	0	0.33652	1	5273	5273		58.782	5.4305	1	1407400	+		27858	25507	22825	22852	31138	31138					0.025919819208070294
LAQPVRRSLP	10	Unmodified	_LAQPVRRSLP_					0	0	0		ENSG00000109171|ENST00000264313|SLAIN2	ENSG00000109171|ENST00000264313|SLAIN2	ENSG00000109171|ENST00000264313|SLAIN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	568.8453369140625	2	568.848564	1135.68258	0.54685	0.00031108	-4.2377	-0.0024106	-3.6909	-0.0020995	568.8459810585302	123.26	2.2433	121.89	120.96	123.2	-1.3666					118	44	3	0	0	0	0.37436	1	11647	11647		71.877	11.759	1	383340			27859	2703	22826	22853	31139	31139					0.12016204762517191
LAQREAEKRL	10	Unmodified	_LAQREAEKRL_					0	0	0			REV__ENST00000536613.6_1_17:37342683-37349731:-|nuORF	REV__ENST00000536613.6_1_17:37342683-37349731:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	607.3530883789062	2	607.354211	1212.69387	-0.61354	-0.00037263	0.40041	0.00024319	-0.21312	-0.00012944	607.3543577015784	45.588	1.5455	42.878	42.497	44.043	-2.7097					76	30	4	0	0	0	0.63752	1	2681	2681		25.574	6.4705	1	376690	+		27860	16831	22827	22854	31140	31140					0.09602982065985088
LAQRLEEP	8	Unmodified	_LAQRLEEP_					0	0	0			REV__nc|ENSG00000005339|Q92793-2|CREBBP;REV__ENSG00000100393|ENST00000263253|EP300	REV__nc|ENSG00000005339|Q92793-2|CREBBP	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.2650146484375	2	478.263999	954.513445	0.1499	7.1694E-05	-0.93042	-0.00044498	-0.78051	-0.00037329	478.2635310226388	62.047	3.0424	58.589	57.417	60.459	-3.4577					136	62	4	0	0	0	0.64026	1	4310	4310		55.504	0.72789	1	2869500	+		27861	16398;17411	22828	22855	31141	31141					0.03436883409131042
LAQSFSCLE	9	Unmodified	_LAQSFSCLE_					0	0	0			REV__nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C	REV__nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.75274658203125	2	499.236593	996.458632	-0.69929	-0.00034911	-2.515	-0.0012556	-3.2143	-0.0016047	499.2354085190356	97.865	0.44865	96.105	95.865	96.314	-1.7595					10	8	2	0	0	0	0.027459	1	6487	6487		52.937	20.124	1	22290	+		27862	23361	22829	22856	31142	31142					-0.03973871453774791
LAQSIIQLRQH	11	Unmodified	_LAQSIIQLRQH_					0	0	0			REV__nc|ENSG00000162994|Q8NHS4-2|CLHC1	REV__nc|ENSG00000162994|Q8NHS4-2|CLHC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	436.28558349609375	3	436.257849	1305.75172	3.184	0.001389	2.1975	0.00095866	5.3815	0.0023477	436.25890448258883	86.866	0.33508	86.866	86.637	86.972	0					11	7	2	0	0	0	0.025988	1	9151	9151		32.034	12.004	1	135130	+		27863	20797	22830	22857	31143	31143					0.1110724399143237
LAQSVAQTI	9	Unmodified	_LAQSVAQTI_					0	0	0			REV__HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|41|1|sense	REV__HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|41|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.7543029785156	2	465.766374	929.518196	0.23403	0.000109	-2.1743	-0.0010127	-1.9402	-0.0009037	465.7652317414238	60.501	0.14726	57.071	56.947	57.095	-3.43					4	2	2	0	0	0	0.027462	1	4087	4087		47.657	19.775	1	58679	+		27864	28244	22831	22858	31144	31144					0.05061767551910634
LAQVFPLIW	9	Unmodified	_LAQVFPLIW_					0	0	0			REV__C16orf57-MAPKAPK5|1|fusion;REV__ENSG00000103005|ENST00000219281|USB1	REV__ENSG00000103005|ENST00000219281|USB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.8179321289062	2	543.820953	1085.62735	-1.0476	-0.0005697	-3.2569	-0.0017712	-4.3045	-0.0023409	543.8192276601923	103.89	1.4672	101.77	101.43	102.9	-2.1192					89	27	4	0	0	0	0.22913	1	9380	9380		71.378	7.1706	1	1545600	+		27865	15717;17587	22832	22859	31145	31145					0.08796398242043324
LAQYGTVEN	9	Unmodified	_LAQYGTVEN_					0	0	0		nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-5|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-1|IGF2BP2;ENST00000461957.5_1_3:185411014-185540996:-|nuORF;ENST00000466476.1_1_3:185414391-185542667:-|nuORF;ENST00000499130.6_1_17:47091311-47113981:+|nuORF;ENST00000515586.5_1_17:47075143-47113981:+|nuORF;nc|ENSG00000159217|Q9NZI8-2|IGF2BP1;ENSG00000159217|ENST00000290341|IGF2BP1	nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000159217|Q9NZI8-2|IGF2BP1	nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2	MULTI-MSMS	OvCa9_classI_Rep3	3	497.74468994140625	2	497.745639	993.476725	1.0884	0.00054174	-1.5068	-0.00075001	-0.41842	-0.00020827	497.744698590085	126.64	0.9929	125.57	125.23	126.22	-1.0715					40	18	3	0	0	0	0.59259	1	9889	9889		32.812	2.3088	1	123940			27866	1501;5997	22833	22860	31146	31146					-0.02027413207429163
LAQYYKVL	8	Unmodified	_LAQYYKVL_					0	0	0		ENSG00000167971|ENST00000343516|CASKIN1	ENSG00000167971|ENST00000343516|CASKIN1	ENSG00000167971|ENST00000343516|CASKIN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.75372314453125	2	499.289485	996.564418	0.50298	0.00025113	-1.8503	-0.00092384	-1.3473	-0.00067271	499.2884849418353	141.15	0.70525	141.15	140.88	141.59	0					19	13	2	0	0	0	0.028476	1	16468	16468		52.299	21.796	1	36947			27867	6853	22834	22861	31147	31147					0.06599832453991894
LARAARAEP	9	Unmodified	_LARAARAEP_					0	0	0		MYH13|p.Q1539Hfs*44|1|0.11|ENSG00000006788|chr17:10311142-10311143|-/G|frameshift_variant	MYH13|p.Q1539Hfs*44|1|0.11|ENSG00000006788|chr17:10311142-10311143|-/G|frameshift_variant	MYH13|p.Q1539Hfs*44|1|0.11|ENSG00000006788|chr17:10311142-10311143|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	477.7774353027344	2	477.777608	953.540663	0.30924	0.00014775	-0.9987	-0.00047716	-0.68946	-0.00032941	477.7771636832581	43.542	2.3879	40.832	40.509	42.897	-2.7097					104	47	3	0	0	0	0.53957	1	2433	2433		38.806	0	1	3363800			27868	14848	22835	22862	31148	31148					0.0620341174017085
LARAKENL	8	Unmodified	_LARAKENL_					0	0	0			REV__ENSG00000114209|ENST00000392750|PDCD10	REV__ENSG00000114209|ENST00000392750|PDCD10	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.7365417480469	2	457.774534	913.534515	-0.85534	-0.00039155	0.28871	0.00013216	-0.56663	-0.00025939	457.7745626093775	65.86	0.8662	65.86	65.665	66.531	0					33	21	3	0	0	0	0.028476	1	6109	6109		27.882	3.6795	1	981400	+		27869	18182	22836	22863	31149	31149					0.07428893508654255
LARALRAEP	9	Unmodified	_LARALRAEP_					0	0	0		ENSG00000134830|ENST00000595464|C5AR2	ENSG00000134830|ENST00000595464|C5AR2	ENSG00000134830|ENST00000595464|C5AR2	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.832275390625	2	498.801083	995.587613	-0.17706	-8.8315E-05	2.6682	0.0013309	2.4912	0.0012426	498.80233387488516	72.77	0.4474	70.283	70.083	70.531	-2.4873					11	8	2	0	0	0	0.027418	1	3492	3492		62.107	12.083	1	9166.1			27870	4336	22837	22864	31150	31150					0.08964271291324621
LARALRPDD	9	Unmodified	_LARALRPDD_					0	0	0		ENSG00000006283|ENST00000359106|CACNA1G;nc|ENSG00000006283|O43497-8|CACNA1G;nc|ENSG00000006283|O43497-9|CACNA1G;nc|ENSG00000006283|O43497-13|CACNA1G;nc|ENSG00000006283|O43497-6|CACNA1G;nc|ENSG00000006283|O43497-17|CACNA1G;nc|ENSG00000006283|O43497-11|CACNA1G;nc|ENSG00000006283|O43497-25|CACNA1G;nc|ENSG00000006283|O43497-20|CACNA1G;nc|ENSG00000006283|O43497-15|CACNA1G;nc|ENSG00000006283|O43497-10|CACNA1G;nc|ENSG00000006283|O43497-16|CACNA1G;nc|ENSG00000006283|O43497-7|CACNA1G;nc|ENSG00000006283|O43497-12|CACNA1G;nc|ENSG00000006283|O43497-33|CACNA1G;nc|ENSG00000006283|O43497-4|CACNA1G;nc|ENSG00000006283|O43497-21|CACNA1G;nc|ENSG00000006283|O43497-34|CACNA1G;nc|ENSG00000006283|O43497-35|CACNA1G;nc|ENSG00000006283|O43497-36|CACNA1G;nc|ENSG00000006283|O43497-3|CACNA1G;nc|ENSG00000006283|O43497-26|CACNA1G;nc|ENSG00000006283|O43497-23|CACNA1G;nc|ENSG00000006283|O43497-22|CACNA1G;nc|ENSG00000006283|O43497-24|CACNA1G;nc|ENSG00000006283|O43497-2|CACNA1G;nc|ENSG00000006283|O43497-27|CACNA1G;nc|ENSG00000006283|O43497-30|CACNA1G;nc|ENSG00000006283|O43497-19|CACNA1G;nc|ENSG00000006283|O43497-28|CACNA1G;nc|ENSG00000006283|O43497-29|CACNA1G;nc|ENSG00000006283|O43497-18|CACNA1G;nc|ENSG00000006283|O43497-32|CACNA1G;nc|ENSG00000006283|O43497-31|CACNA1G;nc|ENSG00000006283|O43497-5|CACNA1G;CACNA1G|p.L1529Qfs*112|1|0.06|ENSG00000006283|chr17:50607900-50607901|TG/-|frameshift_variant	ENSG00000006283|ENST00000359106|CACNA1G	ENSG00000006283|ENST00000359106|CACNA1G	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.7642822265625	2	513.788173	1025.56179	-1.1164	-0.00057357	-0.8107	-0.00041653	-1.9271	-0.0009901	513.7888889531573	34.351	0.28275	34.351	34.209	34.491	0					13	5	3	0	0	0	0.027462	1	1639	1639		16.473	0.83134	1	41450			27871	875	22838	22865	31151	31151					0.05003377049047231
LARASQIH	8	Unmodified	_LARASQIH_					0	0	0			REV__nc|ENSG00000164007|Q8N6F1-2|CLDN19	REV__nc|ENSG00000164007|Q8N6F1-2|CLDN19	MULTI-MSMS	OvCa9_classI_Rep4_	4	448.2590637207031	2	448.259051	894.503549	0.30648	0.00013738	-0.11996	-5.3774E-05	0.18652	8.3608E-05	448.2589237443711	143.15	0.90617	141.71	141.41	142.31	-1.4427					48	17	3	0	0	0	0.75241	1	14027	14027		25.45	3.4903	1	179280	+		27872	20920	22839	22866	31152	31152					0.05207740194430244
LARAVPAARL	10	Unmodified	_LARAVPAARL_					0	0	0			REV__ENST00000293190.9_1_17:72838445-72839279:-|nuORF	REV__ENST00000293190.9_1_17:72838445-72839279:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	519.3319091796875	2	519.33255	1036.65055	0.67622	0.00035118	-1.2042	-0.00062537	-0.52796	-0.00027419	519.3318594599918	71.111	1.2027	68.392	68.008	69.211	-2.7196					78	23	4	0	0	0	0.66721	1	3312	3312		34.173	1.3601	1	1378400	+		27873	24166	22840	22867	31153	31153					0.13368837079360674
LARAVPRKVAL	11	Unmodified	_LARAVPRKVAL_					0	0	0		ENSG00000134463|ENST00000379215|ECHDC3;nc|ENSG00000134463|Q96DC8-2|ECHDC3	ENSG00000134463|ENST00000379215|ECHDC3	ENSG00000134463|ENST00000379215|ECHDC3	MSMS	OvCa99_classI_Rep5	1	597.3941040039062	2	597.395682	1192.77681	NaN	NaN	NaN	NaN	NaN	NaN	NaN	157.15	1	157.15	156.65	157.65	0								0	0	0	0.19474	1	18416	18416		25.574	0	1				27874	4301	22841	22868	31154	31154					0.1881334358465665
LARDEGWLA	9	Unmodified	_LARDEGWLA_					0	0	0		ENST00000558674.5_1_14:24567646-24569225:+|nuORF;nc|ENSG00000100889|Q16822-2|PCK2;nc|ENSG00000100889|Q16822-3|PCK2;ENSG00000100889|ENST00000216780|PCK2	ENST00000558674.5_1_14:24567646-24569225:+|nuORF	ENST00000558674.5_1_14:24567646-24569225:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7698364257812	2	515.769448	1029.52434	0.050745	2.6173E-05	2.7364	0.0014113	2.7871	0.0014375	515.770787080636	38.602	0.94186	35.676	35.354	36.296	-2.9264					41	18	3	0	0	0	0.31747	1	1510	1510		60.972	0.85368	1	181230			27875	2116	22842	22869	31155	31155					0.010762857834379247
LARDNTQLL	9	Unmodified	_LARDNTQLL_					0	0	0		ENSG00000179041|ENST00000320270|RRS1	ENSG00000179041|ENST00000320270|RRS1	ENSG00000179041|ENST00000320270|RRS1	MULTI-MSMS	OvCa9_classI_Rep3	3	522.2979736328125	2	522.29583	1042.57711	-0.86049	-0.00044943	3.8713	0.002022	3.0108	0.0015725	522.2974281798174	100.54	1.3601	98.933	98.612	99.972	-1.6053					79	26	5	0	0	0	0.27001	1	6836	6836		66.429	0	1	361150			27876	7796	22843	22870	31156	31156					0.057522438462456194
LARDWIAL	8	Unmodified	_LARDWIAL_					0	0	0			REV__nc|ENSG00000251692|Q96A99-2|PTX4	REV__nc|ENSG00000251692|Q96A99-2|PTX4	MULTI-MSMS	OvCa9_classI_Rep2	2	479.2794494628906	2	479.279452	956.544351	-0.31076	-0.00014894	0.33219	0.00015921	0.021432	1.0272E-05	479.2797349881233	95.486	3.0134	94.457	93.134	96.147	-1.0281					131	60	4	0	0	0	0.50674	2	8578	8578;8583		76.847	2.8719	1	2203400	+		27877	23499	22844	22871	31157;31158	31157					0.06434081514021273
LARDWIAL	8	Unmodified	_LARDWIAL_					0	0	0			REV__nc|ENSG00000251692|Q96A99-2|PTX4	REV__nc|ENSG00000251692|Q96A99-2|PTX4	MULTI-MSMS	OvCa9_classI_Rep3	3	479.2802429199219	2	479.279452	956.544351	-0.4527	-0.00021697	0.44392	0.00021276	-0.0087808	-4.2085E-06	479.2796688729981	96.325	1.9148	94.496	94.027	95.941	-1.8286					106	37	4	0	0	0	0.56113	1	6328	6328		71.378	2.5911	1	3171600	+		27878	23499	22844	22871	31159	31159					0.06434081514021273
LARDWIAL	8	Unmodified	_LARDWIAL_					0	0	0			REV__nc|ENSG00000251692|Q96A99-2|PTX4	REV__nc|ENSG00000251692|Q96A99-2|PTX4	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.2798767089844	2	479.279452	956.544351	1.2379	0.0005933	-1.3085	-0.00062712	-0.070549	-3.3813E-05	479.2787787537371	96.937	2.2657	94.512	93.76	96.025	-2.4256					110	44	4	0	0	0	0.61758	1	8601	8601		60.294	0	1	2968100	+		27879	23499	22844	22871	31160	31160					0.06434081514021273
LAREKSIPLPL	11	Unmodified	_LAREKSIPLPL_					0	0	0			REV__ENSG00000176641|ENST00000312828|RNF152	REV__ENSG00000176641|ENST00000312828|RNF152	MULTI-MSMS	OvCa99_classI_Rep5	1	412.9273376464844	3	412.927329	1235.76016	1.3925	0.00057501	-0.5646	-0.00023314	0.82794	0.00034188	412.9271482474017	45.564	1.926	45.564	44.75	46.676	0					97	43	4	0	0	0	0.71831	1	3149	3149		23.378	3.3474	1	3464900	+		27880	21961	22845	22872	31161	31161					0.15170797908035638
LARGVRILD	9	Unmodified	_LARGVRILD_					0	0	0			REV__ENSG00000186185|ENST00000593135|KIF18B	REV__ENSG00000186185|ENST00000593135|KIF18B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.83111572265625	2	506.816733	1011.61891	-0.19037	-9.6485E-05	0.61664	0.00031253	0.42627	0.00021604	506.81716638473233	66.87	0.69019	63.379	63.148	63.839	-3.4902					24	13	3	0	0	0	0.027462	1	4883	4883		35.618	15.136	1	26379	+		27881	22563	22846	22873	31162	31162					0.11356844325405291
LARHAALKE	9	Unmodified	_LARHAALKE_					0	0	0		ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-4|SPTBN4;nc|ENSG00000160460|Q9H254-2|SPTBN4	ENSG00000160460|ENST00000598249|SPTBN4	ENSG00000160460|ENST00000598249|SPTBN4	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.8009338378906	2	504.801083	1007.58761	-0.51627	-0.00026061	0.016581	8.3702E-06	-0.49969	-0.00025224	504.8009963645628	39.298	1.0939	36.371	36.146	37.24	-2.9264					65	21	4	0	0	0	0.37135	1	1604	1604		54.776	7.119	1	680690			27882	6068	22847	22874	31163	31163					0.0841227129130857
LARHSAAKKPA	11	Unmodified	_LARHSAAKKPA_					0	0	0			REV__ENST00000539788.5_1_11:114314891-114320694:+|nuORF	REV__ENST00000539788.5_1_11:114314891-114320694:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	575.3453369140625	2	575.346189	1148.67783	-4.8723	-0.0028032	3.718	0.0021391	-1.1543	-0.00066411	575.3482857575835	154.87	1.1278	154.64	154.34	155.47	-0.22696					59	30	3	0	0	0	0.72064	1	15805	15805		22.58	2.5829	1	84487	+		27883	16984	22848	22875	31164	31164					0.10943320619730912
LARILPNKN	9	Unmodified	_LARILPNKN_					0	0	0		nc|ENSG00000059377|P24557-3|TBXAS1;ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-4|TBXAS1;nc|ENSG00000059377|P24557-2|TBXAS1;ENSG00000059377|ENST00000448866|TBXAS1	nc|ENSG00000059377|P24557-3|TBXAS1	nc|ENSG00000059377|P24557-3|TBXAS1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.8421630859375	2	519.824558	1037.63456	-0.91264	-0.00047441	-1.4228	-0.00073963	-2.3355	-0.001214	519.8245552041882	101.38	0.3462	100.62	100.42	100.77	-0.76401					8	6	2	0	0	0	0.027279	1	9310	9310		71.296	7.0884	1	10331			27884	14879	22849	22876	31165	31165					0.11725130842478393
LARILPNKN	9	Unmodified	_LARILPNKN_					0	0	0		nc|ENSG00000059377|P24557-3|TBXAS1;ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-4|TBXAS1;nc|ENSG00000059377|P24557-2|TBXAS1;ENSG00000059377|ENST00000448866|TBXAS1	nc|ENSG00000059377|P24557-3|TBXAS1	nc|ENSG00000059377|P24557-3|TBXAS1	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.8419799804688	2	519.824558	1037.63456	0.35714	0.00018565	-1.8697	-0.00097194	-1.5126	-0.00078629	519.823029954003	103.62	0.89326	102.19	101.76	102.66	-1.4347					21	16	2	0	0	0	0.027417	1	7198	7198		55.504	0	1	12161			27885	14879	22849	22876	31166	31166					0.11725130842478393
LARITLPDF	9	Unmodified	_LARITLPDF_					0	0	0		APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB;APOB|p.N3224Tfs*50|1|0.31|ENSG00000084674|chr2:21007197-21007198|-/CTTCTTCATATTCTGCACTGAAG|frameshift_variant	APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant	APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.3141479492188	2	523.305667	1044.59678	-0.60967	-0.00031904	-3.1693	-0.0016585	-3.779	-0.0019775	523.3038604363768	30.111	0.59806	30.111	29.735	30.334	0					14	11	2	0	0	0	0.027462	1	1136	1136		20.947	2.6848	1	47139			27886	102	22850	22877	31167	31167					0.07626619856978323
LARKGCVE	8	Unmodified	_LARKGCVE_					0	0	0		nc|ENSG00000142733|O95382-3|MAP3K6;ENSG00000142733|ENST00000357582|MAP3K6;nc|ENSG00000142733|O95382-2|MAP3K6	nc|ENSG00000142733|O95382-3|MAP3K6	nc|ENSG00000142733|O95382-3|MAP3K6	MULTI-SECPEP	OvCa99_classI_Rep5	1	438.19873046875	2	438.242012	874.469472	0.99422	0.00043571	-0.82933	-0.00036345	0.16488	7.2259E-05	438.2416867435113	46.593	0.70682	46.593	46.369	47.076	0					22	15	2	0	0	0	0.028476	1	3270	3270		31.955	5.1588	1	130880			27887	4994	22851	22878	31168	31168					0.027215757111662242
LARKNGSL	8	Unmodified	_LARKNGSL_					0	0	0			REV__ENSG00000173110|ENST00000309758|HSPA6	REV__ENSG00000173110|ENST00000309758|HSPA6	MULTI-MSMS	OvCa99_classI_Rep5	1	429.76263427734375	2	429.761426	857.5083	-0.46898	-0.00020155	0.38757	0.00016656	-0.081414	-3.4989E-05	429.7614828006545	70.305	0.94121	70.305	70.089	71.031	0					52	23	3	0	0	0	0.71369	1	6756	6756		40.573	0	1	7582400	+		27888	21748	22852	22879	31169	31169					0.07384624337191781
LARKRIWNKKY	11	Unmodified	_LARKRIWNKKY_					0	0	0		ENSG00000136478|ENST00000584379|TEX2;nc|ENSG00000136478|Q8IWB9-2|TEX2	ENSG00000136478|ENST00000584379|TEX2	ENSG00000136478|ENST00000584379|TEX2	MULTI-MSMS	OvCa9_classI_Rep2	2	492.6350402832031	3	492.636772	1474.88849	-4.4123	-0.0021737	-0.46274	-0.00022796	-4.8751	-0.0024016	492.6364518280441	160.52	2.4825	160.29	159.35	161.83	-0.22697					136	50	4	0	0	0	0.72548	1	16337	16337		9.2118	0	1	91160			27889	4490	22853	22880	31170	31170					0.1700377794177257
LARLAENLI	9	Unmodified	_LARLAENLI_					0	0	0		DGKK|p.N1110Cfs*6|1|0.17|ENSG00000274588|chrX:50376111-50376112|-/ACAG|frameshift_variant;ENSG00000274588|ENST00000611977|DGKK	DGKK|p.N1110Cfs*6|1|0.17|ENSG00000274588|chrX:50376111-50376112|-/ACAG|frameshift_variant	DGKK|p.N1110Cfs*6|1|0.17|ENSG00000274588|chrX:50376111-50376112|-/ACAG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	506.81060791015625	2	506.811116	1011.60768	1.4081	0.00071364	-2.4174	-0.0012251	-1.0093	-0.00051151	506.809990859047	88.555	2.3705	87.187	86.69	89.061	-1.3676					168	47	5	0	0	0	0.35444	1	7803	7803		56.721	3.3696	1	5233500			27890	733	22854	22881	31171	31171					0.10234022231293238
LARLAPPLL	9	Unmodified	_LARLAPPLL_					0	0	0			REV__nc|ENSG00000259803|A6NKX4|SLC22A31	REV__nc|ENSG00000259803|A6NKX4|SLC22A31	MULTI-MSMS	OvCa9_classI_Rep3	3	482.3217468261719	2	482.32112	962.627687	0.84383	0.000407	-1.2403	-0.00059824	-0.39651	-0.00019125	482.32039973806343	113.45	1.7723	112.37	112.01	113.78	-1.0753					105	34	5	0	0	0	0.53957	1	8320	8320		38.806	0	1	798060	+		27891	29181	22855	22882	31172	31172					0.14487817961901328
LARLGLLRL	9	Unmodified	_LARLGLLRL_					0	0	0		ENST00000395900.1_1_11:32457375-32459526:+|nuORF	ENST00000395900.1_1_11:32457375-32459526:+|nuORF	ENST00000395900.1_1_11:32457375-32459526:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	512.8543090820312	2	512.853119	1023.69168	2.3338	0.0011969	-0.48805	-0.0002503	1.8458	0.00094662	512.8527581511023	95.894	1.3896	95.894	95.577	96.966	0					78	32	4	0	0	0	0.69895	1	10470	10470		18.324	0	1	8035900			27892	11306	22856	22883	31173	31173					0.18078598118836453
LARLLQFTT	9	Unmodified	_LARLLQFTT_					0	0	0		RPL4-KIAA0317|1|fusion;ENST00000557688.1_1_14:75130600-75131628:-|nuORF;nc|ENSG00000119682|O15033-2|AREL1;ENST00000557401.5_1_14:75130603-75152321:-|nuORF;ENSG00000119682|ENST00000356357|AREL1	RPL4-KIAA0317|1|fusion;nc|ENSG00000119682|O15033-2|AREL1	RPL4-KIAA0317|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	531.817138671875	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.62352	1	11358	11358		29.15	2.4566	1	178650			27893	32790;3380	22857	22884	31174	31174					0.09498308748334239
LARLNAELN	9	Unmodified	_LARLNAELN_					0	0	0			REV__tr|A0A7D6ZK11|A0A7D6ZK11_9CLOTNitronatemonooxygenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19010PE=4SV=1	REV__tr|A0A7D6ZK11|A0A7D6ZK11_9CLOTNitronatemonooxygenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19010PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.2931213378906	2	507.290548	1012.56654	0.4756	0.00024127	3.3837	0.0017165	3.8593	0.0019578	507.29226202220127	110.52	2.2631	108.91	108.28	110.54	-1.6011					95	42	4	0	0	0	0.40667	1	10179	10179		51.335	3.4199	1	396390	+		27894	32095	22858	22885	31175	31175					0.06076261191810772
LARLPASLL	9	Unmodified	_LARLPASLL_					0	0	0		ENST00000598913.5_1_19:39874412-39874778:+|nuORF	ENST00000598913.5_1_19:39874412-39874778:+|nuORF	ENST00000598913.5_1_19:39874412-39874778:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	477.3133239746094	2	477.310752	952.606951	-0.45941	-0.00021928	0.50838	0.00024266	0.048968	2.3373E-05	477.310800606091	114.94	1.2339	114.82	114.5	115.74	-0.11777					50	24	4	0	0	0	0.24951	1	10950	10950		68.787	7.8149	1	171330			27895	14201	22859	22886	31176	31176					0.12875227582219395
LARLPASLL	9	Unmodified	_LARLPASLL_					0	0	0		ENST00000598913.5_1_19:39874412-39874778:+|nuORF	ENST00000598913.5_1_19:39874412-39874778:+|nuORF	ENST00000598913.5_1_19:39874412-39874778:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	477.310752	952.606951	0.12623	6.0251E-05	-0.16627	-7.9361E-05	-0.040038	-1.9111E-05	477.31051214970125	116.06	1.3831	115.02	114.65	116.03	-1.0414	0.073178	2.6116E-05	NaN	68.787	50	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134840			27896	14201	22859	22886							0.12875227582219395
LARLPASLL	9	Unmodified	_LARLPASLL_					0	0	0		ENST00000598913.5_1_19:39874412-39874778:+|nuORF	ENST00000598913.5_1_19:39874412-39874778:+|nuORF	ENST00000598913.5_1_19:39874412-39874778:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	477.310752	952.606951	0.28551	0.00013628	-1.178	-0.00056227	-0.89247	-0.00042599	477.3100269944572	116.36	1.4862	114.99	114.6	116.08	-1.3645	0.047577	-0.00093969	NaN	68.787	52	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125910			27897	14201	22859	22886							0.12875227582219395
LARLRAVPQS	10	Unmodified	_LARLRAVPQS_					0	0	0		nc|ENSG00000157927|Q96JH8-1|RADIL;ENSG00000157927|ENST00000399583|RADIL	nc|ENSG00000157927|Q96JH8-1|RADIL	nc|ENSG00000157927|Q96JH8-1|RADIL	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.7854614257812	2	555.840739	1109.66693	2.2765	0.0012654	0.12404	6.8944E-05	2.4005	0.0013343	555.8405768125734	93.891	0.62759	93.891	93.508	94.136	0					25	14	2	0	0	0	0.026994	1	10146	10146		32.812	0	1	697410			27898	5920	22860	22887	31177	31177					0.11647918245444089
LARNGKPL	8	Unmodified	_LARNGKPL_					0	0	0		tr|A0A553STI6|A0A553STI6_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_04950PE=3SV=1	tr|A0A553STI6|A0A553STI6_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_04950PE=3SV=1	tr|A0A553STI6|A0A553STI6_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_04950PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	434.77093505859375	2	434.771794	867.529036	-0.43364	-0.00018854	-0.093561	-4.0678E-05	-0.52721	-0.00022921	434.7718097454051	42.269	2.713	39.288	38.959	41.672	-2.9804					147	52	5	0	0	0	0.73288	1	2037	2037		35.201	1.6851	1	8719800			27899	34492	22861	22888	31178	31178					0.08997214716850976
LARNVLIAL	9	Unmodified	_LARNVLIAL_					0	0	0		ENSG00000213903|ENST00000345363|LTB4R	ENSG00000213903|ENST00000345363|LTB4R	ENSG00000213903|ENST00000345363|LTB4R	MULTI-MSMS	OvCa9_classI_Rep2	2	491.8230285644531	2	491.824027	981.633501	-0.60972	-0.00029987	0.45985	0.00022617	-0.14986	-7.3707E-05	491.82410532808257	68.139	1.6844	65.478	65.09	66.774	-2.661					84	33	4	0	0	0	0.44294	1	5364	5364		47.916	1.9636	1	431140			27900	9155	22862	22889	31179	31179					0.14194916473547892
LARPALLL	8	Unmodified	_LARPALLL_					0	0	0		ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	MULTI-MSMS	OvCa9_classI_Rep2	2	433.7948913574219	2	433.794738	865.574923	0.58254	0.0002527	-0.42547	-0.00018457	0.15707	6.8137E-05	433.7944359498501	111.98	2.1215	111.84	111.47	113.59	-0.13961					92	42	4	0	0	0	0.56113	1	10587	10587		71.378	0	1	565240			27901	8139	22863	22890	31180	31180					0.13675859899092302
LARPALLLL	9	Unmodified	_LARPALLLL_					0	0	0		ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	MULTI-MSMS	OvCa9_classI_Rep2	2	490.33648681640625	2	490.33677	978.658987	0.31976	0.00015679	-1.1553	-0.00056648	-0.83553	-0.00040969	490.3362879264998	135.18	3.9777	134.96	134.64	138.62	-0.22697					225	81	5	0	0	0	0.19716	9	13401	13401;13407;13419;13425;13431;13455;13467;13515;13638		76.847	16.553	1	7114000			27902	8139	22864	22891	31181;31182;31183;31184;31185;31186;31187;31188;31189	31181					0.16880390996004735
LARPALLLL	9	Unmodified	_LARPALLLL_					0	0	0		ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	MULTI-MSMS	OvCa9_classI_Rep3	3	490.3364562988281	2	490.33677	978.658987	-1.5535	-0.00076172	0.74111	0.00036339	-0.81236	-0.00039833	490.33716888209767	136.71	4.5569	135.62	135.22	139.77	-1.0858					270	92	5	0	0	0	0.19716	10	11102	11090;11096;11102;11108;11114;11126;11138;11156;11186;11268		76.847	19.035	1	5555400			27903	8139	22864	22891	31190;31191;31192;31193;31194;31195;31196;31197;31198;31199	31192					0.16880390996004735
LARPALLLL	9	Unmodified	_LARPALLLL_					0	0	0		ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.33648681640625	2	490.33677	978.658987	2.3125	0.0011339	-3.376	-0.0016554	-1.0635	-0.00052147	490.335203673426	137.13	5.8682	135.59	135.18	141.05	-1.5437					314	118	5	0	0	0	0.19716	7	13311	13299;13311;13323;13359;13371;13394;13432		76.847	16.553	1	8417000			27904	8139	22864	22891	31200;31201;31202;31203;31204;31205;31206	31201					0.16880390996004735
LARPDLDL	8	Unmodified	_LARPDLDL_					0	0	0			REV__ENST00000293880.9_1_11:57100225-57103093:-|nuORF	REV__ENST00000293880.9_1_11:57100225-57103093:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.3011779785156	2	456.761092	911.507631	-2.3707	-0.0010828	1.3992	0.00063911	-0.97143	-0.00044371	456.761787193125	88.257	0.95903	85.654	85.377	86.336	-2.6027					28	18	2	0	0	0	0.028476	1	7600	7600		34.173	3.6689	1	57216	+		27905	24175	22865	22892	31207	31207					0.04833784897471105
LARPGTTD	8	Unmodified	_LARPGTTD_					0	0	0		ENSG00000113657|ENST00000343218|DPYSL3	ENSG00000113657|ENST00000343218|DPYSL3	ENSG00000113657|ENST00000343218|DPYSL3	MULTI-MSMS	OvCa9_classI_Rep2	2	415.7214050292969	2	415.721967	829.429381	-1.0163	-0.00042249	0.92585	0.0003849	-0.090424	-3.7591E-05	415.72221629127785	119.3	1.3301	119.13	118.81	120.14	-0.17138					54	26	3	0	0	0	0.7549	1	11464	11464		24.203	4.8428	1	206540			27906	2989	22866	22893	31208	31208					0.00784352312223291
LARPPHSND	9	Unmodified	_LARPPHSND_					0	0	0			REV__ENSG00000266074|ENST00000675386|BAHCC1	REV__ENSG00000266074|ENST00000675386|BAHCC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.80035400390625	2	503.756872	1005.49919	0.58932	0.00029687	2.3781	0.001198	2.9674	0.0014948	504.25967851125165	97.313	0.50487	94.935	94.611	95.116	-2.3786					13	9	2	0	0	0	0.02744	1	8628	8628		36.447	0	1	13507	+		27907	23585	22867	22894	31209	31209					-0.0033376901915289636
LARPVRNIVLR	11	Unmodified	_LARPVRNIVLR_					0	0	0			REV__ENST00000496433.5_1_2:3193107-3197993:-|nuORF	REV__ENST00000496433.5_1_2:3193107-3197993:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.26263427734375	3	436.285851	1305.83572	0.36718	0.0001602	-1.7436	-0.00076069	-1.3764	-0.00060049	436.6185621853618	65.073	0.38428	61.587	61.407	61.791	-3.4854					11	7	2	0	0	0	0.02537	1	4657	4657		48.602	31.435	1	71222	+		27908	16590	22868	22895	31210	31210					0.19503819878968898
LARQHFKKRKI	11	Unmodified	_LARQHFKKRKI_					0	0	0		nc|ENSG00000196535|Q92614-3|MYO18A;nc|ENSG00000196535|Q92614-4|MYO18A;ENSG00000196535|ENST00000527372|MYO18A;nc|ENSG00000196535|Q92614-5|MYO18A;nc|ENSG00000196535|Q92614-2|MYO18A;PHF12-MYO18A|2|fusion;PHF12-MYO18A|3|fusion	nc|ENSG00000196535|Q92614-3|MYO18A	nc|ENSG00000196535|Q92614-3|MYO18A	MULTI-SECPEP	OvCa9_classI_Rep3	3	475.60968017578125	3	475.636883	1423.88882	0.4491	0.00021361	1.8002	0.00085626	2.2493	0.0010699	475.6372959846105	81.37	0.40318	79.048	78.905	79.308	-2.3226					9	7	2	0	0	0	0.025911	1	4529	4529		31.634	13.801	1	12100			27909	8622	22869	22896	31211	31211					0.19383197661636586
LARQVAAALQ	10	Unmodified	_LARQVAAALQ_					0	0	0		chr11:68030733-68036462|106|81.53|0.06|10.44|+|2|NDUFS8,NDUFS8|1;ENST00000528492.1_1_11:67798160-67803736:+|nuORF;chr11:68030733-68032940|90|68.22|0.1|9.46|+|2|NDUFS8,None|1;chr11:68030733-68032923|407|15.64|0.93|4.07|+|2|NDUFS8,NDUFS8|1;ENST00000531796.1_1_11:67798160-67799680:+|nuORF;ENST00000526446.5_1_11:67798169-67799804:+|nuORF;ENST00000313468.9_1_11:67798160-67800438:+|nuORF	chr11:68030733-68036462|106|81.53|0.06|10.44|+|2|NDUFS8,NDUFS8|1	chr11:68030733-68036462|106|81.53|0.06|10.44|+|2|NDUFS8,NDUFS8|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.8092651367188	2	520.81419	1039.61383	-3.2806	-0.0017086	-4.4159	-0.0022999	-7.6965	-0.0040084	520.8117536553452	150.77	1.053	149.34	149.03	150.08	-1.4344					36	24	2	0	0	0	0.65434	1	14893	14893		35.618	0.41757	1	49496			27910	302	22870	22897	31212	31212					0.09560540462780409
LARQVAAALQ	10	Unmodified	_LARQVAAALQ_					0	0	0		chr11:68030733-68036462|106|81.53|0.06|10.44|+|2|NDUFS8,NDUFS8|1;ENST00000528492.1_1_11:67798160-67803736:+|nuORF;chr11:68030733-68032940|90|68.22|0.1|9.46|+|2|NDUFS8,None|1;chr11:68030733-68032923|407|15.64|0.93|4.07|+|2|NDUFS8,NDUFS8|1;ENST00000531796.1_1_11:67798160-67799680:+|nuORF;ENST00000526446.5_1_11:67798169-67799804:+|nuORF;ENST00000313468.9_1_11:67798160-67800438:+|nuORF	chr11:68030733-68036462|106|81.53|0.06|10.44|+|2|NDUFS8,NDUFS8|1	chr11:68030733-68036462|106|81.53|0.06|10.44|+|2|NDUFS8,NDUFS8|1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	520.81419	1039.61383	-2.7599	-0.0014374	-4.6471	-0.0024203	-7.407	-0.0038577	520.8115585078942	149.77	0.80133	149.54	149.22	150.02	-0.22696	0.11923	-0.00061656	NaN	35.618	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38807			27911	302	22870	22897							0.09560540462780409
LARQVAAALQ	10	Unmodified	_LARQVAAALQ_					0	0	0		chr11:68030733-68036462|106|81.53|0.06|10.44|+|2|NDUFS8,NDUFS8|1;ENST00000528492.1_1_11:67798160-67803736:+|nuORF;chr11:68030733-68032940|90|68.22|0.1|9.46|+|2|NDUFS8,None|1;chr11:68030733-68032923|407|15.64|0.93|4.07|+|2|NDUFS8,NDUFS8|1;ENST00000531796.1_1_11:67798160-67799680:+|nuORF;ENST00000526446.5_1_11:67798169-67799804:+|nuORF;ENST00000313468.9_1_11:67798160-67800438:+|nuORF	chr11:68030733-68036462|106|81.53|0.06|10.44|+|2|NDUFS8,NDUFS8|1	chr11:68030733-68036462|106|81.53|0.06|10.44|+|2|NDUFS8,NDUFS8|1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	520.81419	1039.61383	-4.3817	-0.0022821	-3.1928	-0.0016628	-7.5745	-0.0039449	520.8123881263654	150.34	0.85776	149.39	149.05	149.91	-0.95186	-0.034818	0.00089827	NaN	35.618	31	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42907			27912	302	22870	22897							0.09560540462780409
LARRAPGP	8	Unmodified	_LARRAPGP_					0	0	0			REV__ENST00000177694.1_1_17:45810693-45811185:+|nuORF	REV__ENST00000177694.1_1_17:45810693-45811185:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	419.256591796875	2	419.256311	836.49807	-0.30895	-0.00012953	0.56585	0.00023724	0.2569	0.00010771	419.2564271002057	38.885	1.3396	35.959	35.601	36.941	-2.9264					48	26	2	0	0	0	0.75991	1	1557	1557		21.702	0	1	347090	+		27913	23688	22871	22898	31213	31213					0.0732806140260891
LARRDVLIT	9	Unmodified	_LARRDVLIT_					0	0	0		BSN|p.P2901Lfs*27|1|0.18|ENSG00000164061|chr3:49660542-49660542|C/-|frameshift_variant;ENSG00000164061|ENST00000296452|BSN	BSN|p.P2901Lfs*27|1|0.18|ENSG00000164061|chr3:49660542-49660542|C/-|frameshift_variant	BSN|p.P2901Lfs*27|1|0.18|ENSG00000164061|chr3:49660542-49660542|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.8429565429688	2	528.82984	1055.64513	-0.18273	-9.6633E-05	-0.2392	-0.0001265	-0.42193	-0.00022313	528.8296392166291	72.823	0.94113	70.336	69.884	70.826	-2.4873					36	18	3	0	0	0	0.027462	1	3447	3447		23.042	0	1	37962			27914	162	22872	22899	31214	31214					0.11953113496883816
LARRMWLHILW	11	Unmodified	_LARRMWLHILW_					0	0	0			REV__ENST00000559345.5_1_15:79187167-79187245:+|nuORF	REV__ENST00000559345.5_1_15:79187167-79187245:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.31048583984375	3	498.955336	1493.84418	-5.1839	-0.0025865	3.5333	0.0017629	-1.6506	-0.00082358	499.2927642288211	160.8	0.30406	160.57	160.33	160.64	-0.22697					7	5	2	0	0	0	0.02642	1	16349	16349		6.3209	1.4347	1	8258.5	+		27915	27597	22873	22900	31215	31215					0.11701050523947742
LARSCYEP	8	Unmodified	_LARSCYEP_					0	0	0			REV__ENSG00000070601|ENST00000377765|FRMPD1	REV__ENSG00000070601|ENST00000377765|FRMPD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	469.758056640625	2	469.723652	937.432752	-0.34675	-0.00016287	-3.435	-0.0016135	-3.7818	-0.0017764	469.721864016757	55.061	1.1011	55.061	54.172	55.273	0					34	25	2	0	0	0	0.028476	1	4368	4368		25.45	0	1	149400	+		27916	16883	22874	22901	31216	31216					-0.03846720905414713
LARSFSAIL	9	Unmodified	_LARSFSAIL_					0	0	0			REV__tr|A0A553SRY8|A0A553SRY8_NIACIfructose-bisphosphatealdolaseOS=NialliacirculansOX=1397GN=CEQ21_02115PE=3SV=1	REV__tr|A0A553SRY8|A0A553SRY8_NIACIfructose-bisphosphatealdolaseOS=NialliacirculansOX=1397GN=CEQ21_02115PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	489.2938232421875	2	489.292559	976.570566	3.4365	0.0016814	-1.2572	-0.00061514	2.1793	0.0010663	489.291709655442	97.593	0.47014	97.593	97.397	97.867	0					22	10	3	0	0	0	0.14998	1	10727	10727		84.916	8.1414	1	792940	+		27917	30777	22875	22902	31217	31217					0.0813435068552053
LARSFSAIL	9	Unmodified	_LARSFSAIL_					0	0	0			REV__tr|A0A553SRY8|A0A553SRY8_NIACIfructose-bisphosphatealdolaseOS=NialliacirculansOX=1397GN=CEQ21_02115PE=3SV=1	REV__tr|A0A553SRY8|A0A553SRY8_NIACIfructose-bisphosphatealdolaseOS=NialliacirculansOX=1397GN=CEQ21_02115PE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	489.292559	976.570566	3.4365	0.0016814	-1.2572	-0.00061514	2.1793	0.0010663	489.291709655442	97.593	0.47014	97.593	97.397	97.867	0	-0.1197	-0.0013981	NaN	84.916	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	792940	+		27918	30777	22875	22902							0.0813435068552053
LARSFSAIL	9	Unmodified	_LARSFSAIL_					0	0	0			REV__tr|A0A553SRY8|A0A553SRY8_NIACIfructose-bisphosphatealdolaseOS=NialliacirculansOX=1397GN=CEQ21_02115PE=3SV=1	REV__tr|A0A553SRY8|A0A553SRY8_NIACIfructose-bisphosphatealdolaseOS=NialliacirculansOX=1397GN=CEQ21_02115PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	489.292559	976.570566	-0.076395	-3.7379E-05	-0.065815	-3.2203E-05	-0.14221	-6.9582E-05	489.292385883584	98.59	1.1443	97.697	97.41	98.554	-0.89306	-0.016142	-0.00023225	NaN	84.916	46	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109180	+		27919	30777	22875	22902							0.0813435068552053
LARSFSAIL	9	Unmodified	_LARSFSAIL_					0	0	0			REV__tr|A0A553SRY8|A0A553SRY8_NIACIfructose-bisphosphatealdolaseOS=NialliacirculansOX=1397GN=CEQ21_02115PE=3SV=1	REV__tr|A0A553SRY8|A0A553SRY8_NIACIfructose-bisphosphatealdolaseOS=NialliacirculansOX=1397GN=CEQ21_02115PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	489.292559	976.570566	-0.73693	-0.00036058	0.63747	0.00031191	-0.099463	-4.8667E-05	489.2927077873045	99.505	0.81931	97.82	97.524	98.344	-1.685	0.10676	0.00045597	NaN	84.916	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97842	+		27920	30777	22875	22902							0.0813435068552053
LARSFSAIL	9	Unmodified	_LARSFSAIL_					0	0	0			REV__tr|A0A553SRY8|A0A553SRY8_NIACIfructose-bisphosphatealdolaseOS=NialliacirculansOX=1397GN=CEQ21_02115PE=3SV=1	REV__tr|A0A553SRY8|A0A553SRY8_NIACIfructose-bisphosphatealdolaseOS=NialliacirculansOX=1397GN=CEQ21_02115PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	489.292559	976.570566	-0.88219	-0.00043165	0.73569	0.00035997	-0.14649	-7.1678E-05	489.2927622034955	100.07	1.0731	97.742	97.366	98.439	-2.3253	0.029081	0.00055209	NaN	84.916	39	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135950	+		27921	30777	22875	22902							0.0813435068552053
LARSPARGL	9	Unmodified	_LARSPARGL_					0	0	0		ENST00000595692.1_1_19:7679981-7682940:+|nuORF;nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3;ENSG00000076826|ENST00000160298|CAMSAP3	ENST00000595692.1_1_19:7679981-7682940:+|nuORF;nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3	nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3	MULTI-MSMS	OvCa9_classI_Rep2	2	470.7880859375	2	470.787976	939.561398	0.23229	0.00010936	-0.89827	-0.0004229	-0.66598	-0.00031354	470.78745923109625	40.781	2.1682	38.071	37.601	39.769	-2.7097					104	43	4	0	0	0	0.48324	1	2085	2085		44.117	3.3386	1	1630700			27922	14893;14179	22876	22903	31218	31218					0.08920002119862147
LARSPARGL	9	Unmodified	_LARSPARGL_					0	0	0		ENST00000595692.1_1_19:7679981-7682940:+|nuORF;nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3;ENSG00000076826|ENST00000160298|CAMSAP3	ENST00000595692.1_1_19:7679981-7682940:+|nuORF;nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3	nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.7882080078125	2	470.787976	939.561398	-0.18553	-8.7345E-05	-1.1363	-0.00053496	-1.3218	-0.00062231	470.78744487463723	40.717	3.4773	37.763	37.112	40.589	-2.9541					147	66	5	0	0	0	0.38529	1	1850	1850		53.351	0.41475	1	6500500			27923	14893;14179	22876	22903	31219	31219					0.08920002119862147
LARSPHRVL	9	Unmodified	_LARSPHRVL_					0	0	0			REV__ENST00000518928.1_1_8:143381726-143407541:-|nuORF	REV__ENST00000518928.1_1_8:143381726-143407541:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.8049926757812	2	524.82235	1047.63015	0.72492	0.00038046	-1.9884	-0.0010436	-1.2635	-0.0006631	524.8210288764824	92.113	0.68388	90.877	90.589	91.273	-1.2355					20	12	2	0	0	0	0.027295	1	8175	8175		45.972	0	1	44021	+		27924	27034	22877	22904	31220	31220					0.1082366641956014
LARSVLKQG	9	Unmodified	_LARSVLKQG_					0	0	0			REV__ENSG00000174145|ENST00000309447|NWD2	REV__ENSG00000174145|ENST00000309447|NWD2	MULTI-MSMS	OvCa9_classI_Rep2	2	486.3050842285156	2	486.303458	970.592364	0.60247	0.00029298	2.7724	0.0013482	3.3749	0.0016412	486.3047947264386	124.97	2.7662	124.74	124.37	127.13	-0.2359					156	55	5	0	0	0	0.18193	1	12147	12147		79.451	8.0731	1	3410600	+		27925	21813	22878	22905	31221	31221					0.10589155434104214
LARTRNHS	8	Unmodified	_LARTRNHS_					0	0	0			REV__nc|ENSG00000127838|Q8N490-2|PNKD	REV__nc|ENSG00000127838|Q8N490-2|PNKD	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.7820739746094	2	477.765032	953.515511	-0.79221	-0.00037849	2.8436	0.0013586	2.0514	0.00098006	477.7663029291649	43.186	0.83957	40.179	39.853	40.693	-3.0074					30	15	3	0	0	0	0.028476	1	2083	2083		47.916	0	1	41991	+		27926	18828	22879	22906	31222	31222					0.03689356937604771
LARVPVILD	9	Unmodified	_LARVPVILD_					0	0	0		nc|ENSG00000163832|Q0PNE2-2|ELP6	nc|ENSG00000163832|Q0PNE2-2|ELP6	nc|ENSG00000163832|Q0PNE2-2|ELP6	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3155517578125	2	498.316035	994.617516	0.23096	0.00011509	-0.60423	-0.0003011	-0.37328	-0.00018601	498.315540241021	111.53	1.5703	110.02	109.53	111.1	-1.5111					86	29	7	0	0	0	0.22961	1	10280	10280		71.296	2.5089	1	1295000			27927	15141	22880	22907	31223	31223					0.11999210236660929
LASALSVHLL	10	Unmodified	_LASALSVHLL_					0	0	0			REV__nc|ENSG00000166736|P46098-2|HTR3A	REV__nc|ENSG00000166736|P46098-2|HTR3A	MULTI-MSMS	OvCa99_classI_Rep5	1	512.3145141601562	2	512.313492	1022.61243	2.2379	0.0011465	0.084105	4.3088E-05	2.322	0.0011896	512.3133813952836	95.098	3.4314	95.098	94.69	98.121	0					162	80	4	0	0	0	0.22395	1	10460	10460		90.777	3.0802	1	10178000	+		27928	28981	22881	22908	31224	31224					0.10202906374036047
LASARRTQAQT	11	Unmodified	_LASARRTQAQT_					0	0	0			REV__nc|ENSG00000082397|Q9Y2J2-3|EPB41L3	REV__nc|ENSG00000082397|Q9Y2J2-3|EPB41L3	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.69580078125	3	401.558187	1201.65273	1.4793	0.00059401	-3.3173	-0.0013321	-1.8381	-0.00073809	401.8910293295942	32.179	0.24823	32.179	31.956	32.204	0					5	4	2	0	0	0	0.025568	1	1379	1379		47.228	14.477	1	8461.4	+		27929	17085	22882	22909	31225	31225					0.05997221026495936
LASAVSQLAI	10	Unmodified	_LASAVSQLAI_					0	0	0			REV__ENST00000554656.5_1_12:57624115-57624707:+|nuORF	REV__ENST00000554656.5_1_12:57624115-57624707:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	486.7898254394531	2	486.78985	971.565146	0.24536	0.00011944	-0.56855	-0.00027677	-0.32319	-0.00015733	486.7894405313225	128.9	1.0381	127.81	127.52	128.56	-1.0933					33	20	2	0	0	0	0.39172	1	10172	10172		69.628	5.4204	1	48985	+		27930	27532	22883	22910	31226	31226					0.07822627103041668
LASCLTPSGAE	11	Unmodified	_LASCLTPSGAE_					0	0	0		ENSG00000135437|ENST00000257895|RDH5;ENST00000547301.1_1_12:56114279-56115319:+|nuORF;ENST00000553187.5_1_12:56114279-56115732:+|nuORF;ENST00000550608.1_1_12:56114968-56115732:+|nuORF	ENSG00000135437|ENST00000257895|RDH5	ENSG00000135437|ENST00000257895|RDH5	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.771240234375	2	524.752607	1047.49066	1.7727	0.00093025	-1.7946	-0.00094173	-0.021865	-1.1474E-05	524.7515373446778	82.296	0.33593	82.296	82.101	82.437	0					10	7	2	0	0	0	0.02557	1	8490	8490		24.519	4.5224	1	108800			27931	4380	22884	22911	31227	31227					-0.031185037706336516
LASDPGPDPQ	10	Unmodified	_LASDPGPDPQ_					0	0	0		GMIP|p.S830Rfs*8|1|0.07|ENSG00000089639|chr19:19630519-19630520|CA/-|frameshift_variant;nc|ENSG00000089639|Q9P107-2|GMIP;ENSG00000089639|ENST00000203556|GMIP	GMIP|p.S830Rfs*8|1|0.07|ENSG00000089639|chr19:19630519-19630520|CA/-|frameshift_variant	GMIP|p.S830Rfs*8|1|0.07|ENSG00000089639|chr19:19630519-19630520|CA/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.76092529296875	2	498.735271	995.45599	-0.51987	-0.00025928	-1.1353	-0.00056622	-1.6552	-0.0008255	498.7369008569989	104.92	0.3587	102.8	102.64	103	-2.1192					11	6	3	0	0	0	0.026994	1	9521	9521		19.104	0	1	13594			27932	1824	22885	22912	31228	31228					-0.041920035870930406
LASFIMSIK	9	Unmodified	_LASFIMSIK_					0	0	0		ENST00000485946.1_1_13:100806772-100812980:+|nuORF	ENST00000485946.1_1_13:100806772-100812980:+|nuORF	ENST00000485946.1_1_13:100806772-100812980:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	504.77777099609375	2	505.291171	1008.56779	-0.25676	-0.00012974	2.7314	0.0013802	2.4746	0.0012504	505.29220064947634	57.125	0.86561	53.78	53.476	54.342	-3.3449					25	16	3	0	0	0	0.027433	1	3745	3745		23.523	0	1	60106			27933	12617	22886	22913	31229	31229					0.06384759236345872
LASFLQRPS	9	Unmodified	_LASFLQRPS_					0	0	0			REV__ENST00000564785.5_1_15:75652863-75653028:-|nuORF	REV__ENST00000564785.5_1_15:75652863-75653028:-|nuORF	MSMS	OvCa9_classI_Rep2	2	509.7856750488281	2	509.787641	1017.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.841	1	99.01	98.51	99.51	-0.83051								0	0	0	0.16648	1	9112	9112		60.972	0	1		+		27934	19669	22887	22914	31230	31230					0.05265162680143476
LASFPWLVL	9	Unmodified	_LASFPWLVL_					0	0	0		ENST00000396987.7_1_8:41456432-41456600:+|nuORF	ENST00000396987.7_1_8:41456432-41456600:+|nuORF	ENST00000396987.7_1_8:41456432-41456600:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.7471313476562	2	523.307678	1044.6008	-0.63401	-0.00033178	-0.23812	-0.00012461	-0.87214	-0.0004564	523.3078215849682	58.714	0.27948	58.714	58.613	58.892	0					8	6	2	0	0	0	0.027462	1	4999	4999		40.573	0	1	92243			27935	11332	22888	22915	31231	31231					0.08028709350696772
LASFVLVNLTG	11	Unmodified	_LASFVLVNLTG_					0	0	0		ENSG00000173456|ENST00000311413|RNF26	ENSG00000173456|ENST00000311413|RNF26	ENSG00000173456|ENST00000311413|RNF26	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3297119140625	2	567.331882	1132.64921	-2.3399	-0.0013275	-1.3687	-0.0007765	-3.7086	-0.002104	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.71789	1	14710	14710		23.523	0.48021	1	241060			27936	7378	22889	22916	31232	31232					0.0881915819995811
LASGAKWPL	9	Unmodified	_LASGAKWPL_					0	0	0		nc|ENSG00000198026|Q9H4Z2-2|ZNF335;ENSG00000198026|ENST00000322927|ZNF335	nc|ENSG00000198026|Q9H4Z2-2|ZNF335	nc|ENSG00000198026|Q9H4Z2-2|ZNF335	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.7720031738281	2	471.774003	941.533452	-0.17183	-8.1063E-05	-4.2398	-0.0020002	-4.4117	-0.0020813	471.77207588102766	73.444	1.1934	70.048	69.736	70.93	-3.3961					60	24	4	0	0	0	0.21395	1	5704	5704		73.975	3.1585	1	844830			27937	8773	22890	22917	31233	31233					0.06034679139747823
LASGGLLRAR	10	Unmodified	_LASGGLLRAR_					0	0	0		ENST00000523677.5_1_1:43748977-43751229:-|nuORF	ENST00000523677.5_1_1:43748977-43751229:-|nuORF	ENST00000523677.5_1_1:43748977-43751229:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.2724304199219	2	507.314358	1012.61416	-0.76305	-0.00038711	-0.76207	-0.00038661	-1.5251	-0.00077372	507.3141975161216	35.012	0.377	35.012	34.772	35.149	0					9	7	2	0	0	0	0.027145	1	1726	1726		18.262	0.89712	1	23692			27938	13152	22891	22918	31234	31234					0.108359601826578
LASGYFLIV	9	Unmodified	_LASGYFLIV_					0	0	0			REV__ENSG00000179055|ENST00000641530|OR13D1	REV__ENSG00000179055|ENST00000641530|OR13D1	MULTI-MSMS	OvCa9_classI_Rep2	2	491.7814025878906	2	491.784036	981.553519	-0.96887	-0.00047648	-3.5823	-0.0017617	-4.5512	-0.0022382	491.7821166855375	85.065	2.7262	83.519	82.95	85.676	-1.5462					113	53	3	0	0	0	0.25214	1	7325	7325		68.485	0	1	636350	+		27939	22097	22892	22919	31235	31235					0.06200430079718444
LASKKKEK	8	Unmodified	_LASKKKEK_					0	0	0		nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.7543029785156	2	466.300384	930.586216	0.30119	0.00014044	1.2764	0.0005952	1.5776	0.00073564	466.30077858010065	60.699	0.24868	57.269	57.046	57.294	-3.43					5	4	2	0	0	0	0.028476	1	4111	4111		44.117	0	1	5631.3			27940	8721	22893	22920	31236	31236					0.11814637202564882
LASKNKHVL	9	Unmodified	_LASKNKHVL_					0	0	0			REV__ENST00000559009.1_1_15:102312406-102316387:-|nuORF	REV__ENST00000559009.1_1_15:102312406-102316387:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	505.3105773925781	2	505.311284	1008.60801	-0.31971	-0.00016155	0.41098	0.00020767	0.091273	4.6121E-05	505.31135070665835	72.278	1.6332	69.676	69.376	71.01	-2.6023					63	32	4	0	0	0	0.40667	1	3441	3441		51.335	1.8939	1	522480	+		27941	27591	22894	22921	31237	31237					0.10405441951138528
LASKNLNN	8	Unmodified	_LASKNLNN_					0	0	0			REV__ENSG00000198954|ENST00000361983|KIFBP	REV__ENSG00000198954|ENST00000361983|KIFBP	MULTI-MSMS	OvCa99_classI_Rep5	1	437.2430114746094	2	437.243067	872.47158	0.19908	8.7048E-05	-0.09634	-4.2124E-05	0.10274	4.4924E-05	437.24289916961663	41.743	0.65025	41.743	41.505	42.156	0					32	14	3	0	0	0	0.48084	1	2630	2630		79.451	4.4077	1	767510	+		27942	23100	22895	22922	31238	31238					0.03024327720618203
LASLRELG	8	Unmodified	_LASLRELG_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-MSMS	OvCa9_classI_Rep2	2	429.7562561035156	2	429.75581	857.497067	-0.065104	-2.7979E-05	0.19038	8.1818E-05	0.12528	5.3839E-05	429.75572507805686	31.13	0.63941	28.42	28.15	28.789	-2.7097					31	12	3	0	0	0	0.745	1	911	911		29.15	2.4566	1	162230			27943	4112	22896	22923	31239	31239					0.06261802243034253
LASMGKLIRM	10	2 Oxidation (M)	_LASM(Oxidation (M))GKLIRM(Oxidation (M))_		LASM(1)GKLIRM(1)		LASM(53)GKLIRM(53)	0	0	2		ENST00000434116.6_1_15:65916409-65944223:+|nuORF	ENST00000434116.6_1_15:65916409-65944223:+|nuORF	ENST00000434116.6_1_15:65916409-65944223:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	576.3212280273438	2	576.317394	1150.62024	0.13914	8.0186E-05	2.0108	0.0011589	2.1499	0.001239	576.3183784303181	162.32	0.55284	162.32	161.97	162.53	0					25	10	3	0	0	0	0.50999	1	19028	19028		52.937	6.4799	1	297850			27944	11836	22897	22924	31240	31240		327;328			0.05094974307689881
LASNVKYKKD	10	Unmodified	_LASNVKYKKD_					0	0	0		ENSG00000078114|ENST00000377122|NEBL	ENSG00000078114|ENST00000377122|NEBL	ENSG00000078114|ENST00000377122|NEBL	MULTI-MSMS	OvCa99_classI_Rep5	1	583.3295288085938	2	583.332413	1164.65027	-0.77054	-0.00044948	-1.684	-0.00098231	-2.4545	-0.0014318	583.331363247372	29.263	0.4486	29.263	29.087	29.536	0					15	8	2	0	0	0	0.69073	1	1028	1028		31.53	1.0262	1	377060			27945	1585	22898	22925	31241	31241					0.07453372568852501
LASPLPRPHG	10	Unmodified	_LASPLPRPHG_					0	0	0			REV__ENST00000559827.1_1_15:101142731-101143157:-|nuORF	REV__ENST00000559827.1_1_15:101142731-101143157:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.650390625	2	522.801083	1043.58761	-1.1281	-0.00058979	-0.049305	-2.5777E-05	-1.1774	-0.00061557	522.8008397851765	28.626	0.3989	28.626	28.489	28.888	0					12	7	2	0	0	0	0.027028	1	960	960		18.262	0	1	48839	+		27946	27604	22899	22926	31242	31242					0.0675627129132863
LASPLRSIYSQ	11	Unmodified	_LASPLRSIYSQ_					0	0	0			REV__ENST00000555945.1_1_14:45431624-45465140:+|nuORF	REV__ENST00000555945.1_1_14:45431624-45465140:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.7041931152344	3	412.231189	1233.67174	0.83406	0.00034383	3.2089	0.0013228	4.043	0.0016666	412.23246936572326	30.458	0.64481	30.458	30.186	30.831	0					20	12	2	0	0	0	0.025772	1	1162	1162		39.873	8.2389	1	31703	+		27947	23048	22900	22927	31243	31243					0.06424757597551434
LASPSRNG	8	Unmodified	_LASPSRNG_					0	0	0			REV__IL32|p.V135Sfs*24|1|0.23|ENSG00000008517|chr16:3069051-3069052|-/GAGTGCTT|frameshift_variant	REV__IL32|p.V135Sfs*24|1|0.23|ENSG00000008517|chr16:3069051-3069052|-/GAGTGCTT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	401.19146728515625	2	401.214309	800.414065	-0.033262	-1.3345E-05	0.59849	0.00024012	0.56523	0.00022678	401.2143866058277	37.956	1.1856	35.246	35.075	36.261	-2.7097					32	23	2	0	0	0	0.028476	1	1729	1729		10.866	0	1	41589	+		27948	28304	22901	22928	31244	31244					0.005874855150523217
LASQASRPT	9	Unmodified	_LASQASRPT_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.K1327Rfs*8|1|0.05|ENSG00000065526|chr1:15930219-15930220|-/G|frameshift_variant;SPEN|p.L1328Vfs*10|1|0.05|ENSG00000065526|chr1:15930221-15930222|-/GTCCAATCAAAAAAGCC|frameshift_variant;SPEN|p.S920Wfs*24|1|0.06|ENSG00000065526|chr1:15928998-15928999|-/GGTCTCAAATTCCTGAC|frameshift_variant;ENST00000471538.1_1_1:16200459-16203174:+|nuORF	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	OvCa9_classI_Rep2	2	465.7529602050781	2	465.753798	929.493044	-0.59884	-0.00027891	-0.26594	-0.00012386	-0.86478	-0.00040278	465.75348977247216	47.109	0.79227	44.399	44.192	44.984	-2.7097					37	15	3	0	0	0	0.48324	1	2855	2855		44.117	0	1	315460			27949	1329	22902	22929	31245	31245					0.025477127493331864
LASQASRPT	9	Unmodified	_LASQASRPT_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.K1327Rfs*8|1|0.05|ENSG00000065526|chr1:15930219-15930220|-/G|frameshift_variant;SPEN|p.L1328Vfs*10|1|0.05|ENSG00000065526|chr1:15930221-15930222|-/GTCCAATCAAAAAAGCC|frameshift_variant;SPEN|p.S920Wfs*24|1|0.06|ENSG00000065526|chr1:15928998-15928999|-/GGTCTCAAATTCCTGAC|frameshift_variant;ENST00000471538.1_1_1:16200459-16203174:+|nuORF	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.75262451171875	2	465.753798	929.493044	-0.081161	-3.7801E-05	-3.8228	-0.0017805	-3.904	-0.0018183	465.7514399168433	47.319	2.4038	44.246	42.876	45.279	-3.0724					87	46	3	0	0	0	0.091859	1	2559	2559		99.375	6.2317	1	2414500			27950	1329	22902	22929	31246	31246					0.025477127493331864
LASQASRPT	9	Unmodified	_LASQASRPT_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.K1327Rfs*8|1|0.05|ENSG00000065526|chr1:15930219-15930220|-/G|frameshift_variant;SPEN|p.L1328Vfs*10|1|0.05|ENSG00000065526|chr1:15930221-15930222|-/GTCCAATCAAAAAAGCC|frameshift_variant;SPEN|p.S920Wfs*24|1|0.06|ENSG00000065526|chr1:15928998-15928999|-/GGTCTCAAATTCCTGAC|frameshift_variant;ENST00000471538.1_1_1:16200459-16203174:+|nuORF	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	465.753798	929.493044	-0.54466	-0.00025368	-10.834	-0.0050459	-11.378	-0.0052996	465.7485375275622	46.927	0.44735	44.217	43.844	44.291	-2.7097	-0.014751	-0.0016351	NaN	99.375	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135880			27951	1329	22902	22929							0.025477127493331864
LASQLDLLA	9	Unmodified	_LASQLDLLA_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.27740478515625	2	472.276575	942.538597	0.43065	0.00020338	-0.7507	-0.00035454	-0.32005	-0.00015115	472.2760494379954	62.742	1.0695	59.284	58.864	59.933	-3.4577					51	21	3	0	0	0	0.33652	1	4372	4372		58.782	2.0609	1	775190	+		27952	29026	22903	22930	31247	31247					0.0650293821172454
LASQLDLLA	9	Unmodified	_LASQLDLLA_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	MULTI-MATCH	OvCa99_classI_Rep5	1		2	472.276575	942.538597	-0.43826	-0.00020698	-1.8019	-0.00085101	-2.2402	-0.001058	472.2768886685868	59.183	0.45207	59.183	58.852	59.304	0	-0.088041	-0.0017594	NaN	58.782	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	618050	+		27953	29026	22903	22930							0.0650293821172454
LASQLDLLA	9	Unmodified	_LASQLDLLA_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	472.276575	942.538597	-1.6758	-0.00079143	1.5402	0.00072742	-0.13552	-6.4003E-05	472.27711720133084	62.105	1.0547	59.345	58.882	59.937	-2.7593	0.074703	0.0013975	NaN	58.782	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125320	+		27954	29026	22903	22930							0.0650293821172454
LASQLDLLA	9	Unmodified	_LASQLDLLA_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	472.276575	942.538597	0.43065	0.00020338	-0.7507	-0.00035454	-0.32005	-0.00015115	472.2760494379954	62.742	1.0695	59.284	58.864	59.933	-3.4577	0.013338	-0.00076643	NaN	58.782	51	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	775190	+		27955	29026	22903	22930							0.0650293821172454
LASQLLSGAI	10	Unmodified	_LASQLLSGAI_					0	0	0		ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	MSMS	OvCa9_classI_Rep4_	4	486.7922058105469	2	486.78985	971.565146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.801	1	79.118	78.618	79.618	-2.6829								0	0	0	0.053748	1	6736	6736		107.01	7.6326	1				27956	4876	22904	22931	31248	31248					0.07822627103064406
LASQSGQPLAI	11	Unmodified	_LASQSGQPLAI_					0	0	0		nc|ENSG00000101251|Q5TEA6-2|SEL1L2;ENSG00000101251|ENST00000284951|SEL1L2	nc|ENSG00000101251|Q5TEA6-2|SEL1L2	nc|ENSG00000101251|Q5TEA6-2|SEL1L2	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.8057861328125	2	542.803488	1083.59242	0.68477	0.0003717	-1.6929	-0.00091889	-1.0081	-0.00054719	542.8024828624872	86.214	1.0363	83.568	83.293	84.33	-2.6463					58	20	4	0	0	0	0.25285	1	7276	7276		72.879	4.0331	1	934860			27957	14929	22905	22932	31249	31249					0.053971106434119065
LASQSGQPLAI	11	Unmodified	_LASQSGQPLAI_					0	0	0		nc|ENSG00000101251|Q5TEA6-2|SEL1L2;ENSG00000101251|ENST00000284951|SEL1L2	nc|ENSG00000101251|Q5TEA6-2|SEL1L2	nc|ENSG00000101251|Q5TEA6-2|SEL1L2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.803488	1083.59242	-2.1663	-0.0011759	1.3714	0.00074441	-0.79489	-0.00043147	542.8041997983155	84.968	1.0862	83.421	83.104	84.19	-1.5462	-0.11911	0.0011575	NaN	72.879	68	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405730			27958	14929	22905	22932							0.053971106434119065
LASQSGQPLAI	11	Unmodified	_LASQSGQPLAI_					0	0	0		nc|ENSG00000101251|Q5TEA6-2|SEL1L2;ENSG00000101251|ENST00000284951|SEL1L2	nc|ENSG00000101251|Q5TEA6-2|SEL1L2	nc|ENSG00000101251|Q5TEA6-2|SEL1L2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	542.803488	1083.59242	-0.87014	-0.00047231	-0.043947	-2.3854E-05	-0.91408	-0.00049617	542.8034196901115	85.852	0.95113	83.632	83.386	84.337	-2.2204	0.091495	-0.00037899	NaN	72.879	56	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1061600			27959	14929	22905	22932							0.053971106434119065
LASRLKFDRY	10	Unmodified	_LASRLKFDRY_					0	0	0			REV__ENSG00000163093|ENST00000295240|BBS5	REV__ENSG00000163093|ENST00000295240|BBS5	MULTI-MSMS	OvCa9_classI_Rep4_	4	634.8585815429688	2	634.859129	1267.70371	0.91743	0.00058244	-2.2393	-0.0014216	-1.3218	-0.00083918	634.8576710032044	97.52	2.7566	95.141	94.708	97.465	-2.3786					143	53	5	0	0	0	0.45822	1	8648	8648		60.118	1.3363	1	2559000	+		27960	20807	22906	22933	31250	31250					0.08056170071358792
LASRLLTPG	9	Unmodified	_LASRLLTPG_					0	0	0		ENST00000532336.1_1_11:8602460-8615297:-|nuORF	ENST00000532336.1_1_11:8602460-8615297:-|nuORF	ENST00000532336.1_1_11:8602460-8615297:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.2970275878906	2	464.284734	926.554916	-0.79146	-0.00036746	-2.9056	-0.001349	-3.6971	-0.0017165	464.282790837602	104.1	0.1575	101.98	101.9	102.06	-2.1192					4	2	2	0	0	0	0.027462	1	9412	9412		35.618	0	1	8285.8			27961	13322	22907	22934	31251	31251					0.08870064168468161
LASRLQPPTL	10	Unmodified	_LASRLQPPTL_					0	0	0			REV__ENST00000467643.5_1_3:122474254-122512599:-|nuORF	REV__ENST00000467643.5_1_3:122474254-122512599:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	548.330322265625	2	548.329673	1094.64479	-0.12096	-6.6329E-05	-0.25476	-0.00013969	-0.37573	-0.00020602	548.3294214278715	46.156	1.5889	43.446	43.048	44.637	-2.7097					78	31	4	0	0	0	0.37436	1	2758	2758		71.877	4.3838	1	518670	+		27962	26209	22908	22935	31252	31252					0.10125693777035849
LASRLRGGP	9	Unmodified	_LASRLRGGP_					0	0	0			REV__ENST00000474018.1_1_6:170101688-170101769:-|nuORF	REV__ENST00000474018.1_1_6:170101688-170101769:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.2970275878906	2	463.780151	925.545748	-0.81543	-0.00037818	3.816	0.0017698	3.0006	0.0013916	463.7817211388495	103.68	0.83647	101.56	101.17	102.01	-2.1192					21	15	2	0	0	0	0.027462	1	9412	9412		35.618	10.168	1	14657	+		27963	26338	22909	22936	31253	31253					0.079997156028071
LASRLRGGP	9	Unmodified	_LASRLRGGP_					0	0	0			REV__ENST00000474018.1_1_6:170101688-170101769:-|nuORF	REV__ENST00000474018.1_1_6:170101688-170101769:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	463.780151	925.545748	-0.24381	-0.00011307	3.3039	0.0015323	3.0601	0.0014192	463.78137577764915	103.19	0.73309	101.76	101.24	101.97	-1.4347	0.098694	-0.00029916	NaN	32.812	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15607	+		27964	26338	22909	22936							0.079997156028071
LASRPLLL	8	Unmodified	_LASRPLLL_					0	0	0		ENSG00000134247|ENST00000393203|PTGFRN	ENSG00000134247|ENST00000393203|PTGFRN	ENSG00000134247|ENST00000393203|PTGFRN	MULTI-MSMS	OvCa9_classI_Rep2	2	441.7909240722656	2	441.792195	881.569838	0.82414	0.0003641	-0.58903	-0.00026023	0.23511	0.00010387	441.79181108762515	98.876	1.2936	97.983	97.707	99.001	-0.89305					68	25	4	0	0	0	0.60331	1	9019	9019		63.306	0	1	472290			27965	4267	22910	22937	31254	31254					0.12431556036472102
LASSESLRR	9	Unmodified	_LASSESLRR_					0	0	0			REV__ENSG00000124535|ENST00000380773|WRNIP1	REV__ENSG00000124535|ENST00000380773|WRNIP1	MSMS	OvCa9_classI_Rep2	2	509.7863464355469	2	509.78563	1017.55671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.94	1	99.11	98.61	99.61	-0.83051								0	0	0	0.16648	1	9124	9124		60.972	2.19	1		+		27966	18691	22911	22938	31255	31255					0.048630731864250265
LASSQRALLS	10	Unmodified	_LASSQRALLS_					0	0	0			REV__chr3:185644587-185647025|93|28.32|0.1|8.13|-|1|None,IGF2BP2|1	REV__chr3:185644587-185647025|93|28.32|0.1|8.13|-|1|None,IGF2BP2|1	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3031005859375	2	523.303655	1044.59276	-0.69596	-0.0003642	0.54848	0.00028702	-0.14748	-7.7179E-05	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.73378	1	13887	13887		26.693	0	1	130240	+		27967	16039	22912	22939	31256	31256					0.07224530363305348
LASSSRLP	8	Unmodified	_LASSSRLP_					0	0	0			REV__ENSG00000185219|ENST00000396077|ZNF445	REV__ENSG00000185219|ENST00000396077|ZNF445	MSMS	OvCa99_classI_Rep5	1	415.7403564453125	2	415.74016	829.465767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.069	1	42.069	41.569	42.569	0								0	0	0	0.30129	1	2676	2676		30.504	1.3541	1		+		27968	22486	22913	22940	31257	31257					0.044212292089468974
LASSSVSGVL	10	Unmodified	_LASSSVSGVL_					0	0	0			REV__ENSG00000123643|ENST00000243389|SLC36A1;REV__ENSG00000186334|ENST00000335230|SLC36A3	REV__ENSG00000123643|ENST00000243389|SLC36A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	460.25927734375	2	460.258382	918.502212	-0.48062	-0.00022121	0.097999	4.5105E-05	-0.38262	-0.00017611	460.258286152919	58.272	1.7494	54.924	54.543	56.292	-3.3478					64	34	3	0	0	0	0.56767	1	3849	3849		45.952	1.5748	1	794340	+		27969	18652;22576	22914	22941	31258	31258					0.03970061315010298
LASTRGAE	8	Unmodified	_LASTRGAE_					0	0	0			REV__ENST00000493518.5_1_10:120514304-120514760:-|nuORF	REV__ENST00000493518.5_1_10:120514304-120514760:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.90081787109375	2	402.714142	803.413731	0.9357	0.00037682	4.3538	0.0017533	5.2895	0.0021301	402.71587936639327	55.569	0.57174	55.569	55.401	55.973	0					19	13	2	0	0	0	0.028476	1	4573	4573		38.806	16.846	1	199310	+		27970	26707	22915	22942	31259	31259					0.00416065795184295
LASTVLALAL	10	Unmodified	_LASTVLALAL_					0	0	0		ENST00000264705.8_1_2:27455482-27455539:+|nuORF	ENST00000264705.8_1_2:27455482-27455539:+|nuORF	ENST00000264705.8_1_2:27455482-27455539:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	486.31134033203125	2	486.310418	970.606283	1.5649	0.00076102	0.56222	0.00027341	2.1271	0.0010344	486.3105740309342	122.81	0.64694	122.81	122.58	123.23	0					31	13	3	0	0	0	0.50656	1	14162	14162		53.351	3.9099	1	514120			27971	9935	22916	22943	31260	31260					0.11980388142490028
LASVAYLINTL	11	Unmodified	_LASVAYLINTL_					0	0	0		nc|ENSG00000138443|Q9NYB9-4|ABI2;nc|ENSG00000138443|Q9NYB9|ABI2;ABI2|p.E467Kfs*27|1|0.4|ENSG00000138443|chr2:203427208-203427208|G/-|frameshift_variant;ENSG00000138443|ENST00000261018|ABI2;ENST00000376135.5_1_2:204193204-204247972:+|nuORF;nc|ENSG00000138443|Q9NYB9-2|ABI2;ENST00000494215.1_1_2:204193204-204231797:+|nuORF	nc|ENSG00000138443|Q9NYB9-4|ABI2	nc|ENSG00000138443|Q9NYB9-4|ABI2	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3422241210938	2	589.344989	1176.67542	-3.0463	-0.0017953	-0.38122	-0.00022467	-3.4276	-0.00202	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.72064	1	14932	14932		22.58	0	1	272220			27972	9	22917	22944	31261	31261					0.09415427371436635
LATARGLVSR	10	Unmodified	_LATARGLVSR_					0	0	0		ENST00000575478.5_2_17:19263690-19266015:-|nuORF	ENST00000575478.5_2_17:19263690-19266015:-|nuORF	ENST00000575478.5_2_17:19263690-19266015:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.2742309570312	2	522.31964	1042.62473	-0.36675	-0.00019156	-3.563	-0.001861	-3.9298	-0.0020526	522.3181942661196	64.961	0.43713	64.961	64.793	65.231	0					13	10	2	0	0	0	0.027028	1	5960	5960		31.53	0	1	127550			27973	13939	22918	22945	31262	31262					0.10511942837092647
LATAVTQQVQ	10	Unmodified	_LATAVTQQVQ_					0	0	0		ENSG00000197953|ENST00000356517|AADACL2	ENSG00000197953|ENST00000356517|AADACL2	ENSG00000197953|ENST00000356517|AADACL2	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.8092041015625	2	529.795663	1057.57677	-2.1387	-0.001133	-3.5732	-0.0018931	-5.7118	-0.0030261	529.7934125757994	61.851	2.0522	59.091	58.094	60.146	-2.7593					91	39	3	0	0	0	0.026665	1	4593	4593		26.693	0	1	207110			27974	8766	22919	22946	31263	31263					0.05028824126384279
LATELDSLEF	10	Unmodified	_LATELDSLEF_					0	0	0			REV__ENSG00000138735|ENST00000354960|PDE5A	REV__ENSG00000138735|ENST00000354960|PDE5A	MULTI-MSMS	OvCa99_classI_Rep5	1	569.2852172851562	2	569.287337	1136.56012	-0.86594	-0.00049297	-1.9494	-0.0011098	-2.8154	-0.0016028	569.286217449846	28.03	0.44886	28.03	27.841	28.29	0					14	8	3	0	0	0	0.66721	1	884	884		34.173	1.3601	1	75533	+		27975	19564	22920	22947	31264	31264					-0.0026972155023941013
LATETLSIFFG	11	Unmodified	_LATETLSIFFG_					0	0	0			REV__ENSG00000279111|ENST00000623167|OR10X1	REV__ENSG00000279111|ENST00000623167|OR10X1	MULTI-SECPEP	OvCa99_classI_Rep5	1	600.79931640625	2	599.821347	1197.62814	-0.36859	-0.00022109	0.70398	0.00042226	0.33539	0.00020118	599.8214615728267	25.016	0.70448	25.016	24.738	25.442	0					15	13	2	0	0	0	0.026289	1	551	551		19.104	1.6355	1	14229	+		27976	23652	22921	22948	31265	31265					0.03723148100425533
LATFFCVTQ	9	Unmodified	_LATFFCVTQ_					0	0	0			REV__ENST00000432299.5_1_3:37035261-37038145:+|nuORF	REV__ENST00000432299.5_1_3:37035261-37038145:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7932739257812	2	515.257328	1028.5001	-0.6079	-0.00031323	4.0477	0.0020856	3.4398	0.0017724	515.2592654034333	33.608	0.54022	33.608	33.236	33.776	0					16	10	3	0	0	0	0.02744	1	1542	1542		52.937	17.318	1	69556	+		27977	25732	22922	22949	31266	31266					-0.013006906944610819
LATFPRGLG	9	Unmodified	_LATFPRGLG_					0	0	0		ENST00000564988.5_1_15:83776528-83788831:+|nuORF	ENST00000564988.5_1_15:83776528-83788831:+|nuORF	ENST00000564988.5_1_15:83776528-83788831:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	466.77044677734375	2	466.271627	930.528701	1.4643	0.00068274	1.6716	0.00077943	3.1359	0.0014622	466.2719472250812	83.532	0.42381	83.532	83.377	83.801	0					12	9	2	0	0	0	0.027462	1	8678	8678		23.042	3.6825	1	278410			27978	13815	22923	22950	31267	31267					0.06065794996993645
LATGRGEI	8	Unmodified	_LATGRGEI_					0	0	0		tr|A0A553SHI3|A0A553SHI3_NIACI4-diphosphocytidyl-2-C-methyl-D-erythritolkinaseOS=NialliacirculansOX=1397GN=ispEPE=3SV=1	tr|A0A553SHI3|A0A553SHI3_NIACI4-diphosphocytidyl-2-C-methyl-D-erythritolkinaseOS=NialliacirculansOX=1397GN=ispEPE=3SV=1	tr|A0A553SHI3|A0A553SHI3_NIACI4-diphosphocytidyl-2-C-methyl-D-erythritolkinaseOS=NialliacirculansOX=1397GN=ispEPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	408.7319030761719	2	408.732335	815.450116	-0.1039	-4.2468E-05	0.28926	0.00011823	0.18536	7.5763E-05	408.73234956894896	50.795	1.6344	48.001	47.48	49.115	-2.794					54	32	4	0	0	0	0.71267	1	3295	3295		40.778	6.6056	1	140210			27979	33276	22924	22951	31268	31268					0.03500942691914588
LATIDVALQ	9	Unmodified	_LATIDVALQ_					0	0	0		tr|A0A553SJZ2|A0A553SJZ2_NIACIDNApolymeraseIIIsubunitalphaOS=NialliacirculansOX=1397GN=CEQ21_17785PE=3SV=1	tr|A0A553SJZ2|A0A553SJZ2_NIACIDNApolymeraseIIIsubunitalphaOS=NialliacirculansOX=1397GN=CEQ21_17785PE=3SV=1	tr|A0A553SJZ2|A0A553SJZ2_NIACIDNApolymeraseIIIsubunitalphaOS=NialliacirculansOX=1397GN=CEQ21_17785PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	472.27703857421875	2	472.276575	942.538597	2.3533	0.0011114	3.674	0.0017352	6.0273	0.0028466	472.27660716031306	84.867	0.9502	84.867	84.472	85.422	0					64	22	5	0	0	0	0.16524	1	8906	8906		82.305	0	1	1724900			27980	33557	22925	22952	31269	31269					0.06502938211713172
LATIDVALQ	9	Unmodified	_LATIDVALQ_					0	0	0		tr|A0A553SJZ2|A0A553SJZ2_NIACIDNApolymeraseIIIsubunitalphaOS=NialliacirculansOX=1397GN=CEQ21_17785PE=3SV=1	tr|A0A553SJZ2|A0A553SJZ2_NIACIDNApolymeraseIIIsubunitalphaOS=NialliacirculansOX=1397GN=CEQ21_17785PE=3SV=1	tr|A0A553SJZ2|A0A553SJZ2_NIACIDNApolymeraseIIIsubunitalphaOS=NialliacirculansOX=1397GN=CEQ21_17785PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	472.276575	942.538597	-1.0343	-0.00048847	-0.85864	-0.00040552	-1.8929	-0.00089399	472.2760938825974	87.806	0.70457	85.179	84.799	85.503	-2.6269	0.15624	-0.0011454	NaN	82.305	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35166			27981	33557	22925	22952							0.06502938211713172
LATIKKLLH	9	Unmodified	_LATIKKLLH_					0	0	0			REV__ENST00000248071.5_1_19:16438326-16438434:+|nuORF	REV__ENST00000248071.5_1_19:16438326-16438434:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.83642578125	2	518.847502	1035.68045	-0.84537	-0.00043862	3.7385	0.0019397	2.8932	0.0015011	518.848088491919	55.646	0.16334	55.646	55.559	55.723	0					7	3	3	0	0	0	0.027462	1	4558	4558		12.207	0	1	124240	+		27982	23842	22926	22953	31270	31270					0.1640377602470835
LATKGSDIHG	10	Unmodified	_LATKGSDIHG_					0	0	0			REV__ENSG00000132394|ENST00000254730|EEFSEC	REV__ENSG00000132394|ENST00000254730|EEFSEC	MULTI-MSMS	OvCa9_classI_Rep2	2	499.76531982421875	2	499.766906	997.519259	0.42625	0.00021303	-4.146	-0.002072	-3.7197	-0.001859	499.76512722989173	126.31	4.05	126.07	125.5	129.55	-0.2359					192	81	3	0	0	0	0.62299	1	12303	12303		39.253	0	1	11682000	+		27983	19075	22927	22954	31271	31271					0.020399819207909786
LATLAACLV	9	Unmodified	_LATLAACLV_					0	0	0		nc|ENSG00000003137|Q9NR63-2|CYP26B1;ENSG00000003137|ENST00000001146|CYP26B1	nc|ENSG00000003137|Q9NR63-2|CYP26B1	nc|ENSG00000003137|Q9NR63-2|CYP26B1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	437.2278747558594	2	437.756964	873.499375	-0.17669	-7.7347E-05	-4.127	-0.0018066	-4.3037	-0.001884	437.7550675236239	91.35	0.60876	88.808	88.553	89.162	-2.5425					16	11	2	0	0	0	0.027462	1	7912	7912		50.025	2.1089	1	28284			27984	817	22928	22955	31272	31272					0.05756514656479794
LATLYLLGM	9	Unmodified	_LATLYLLGM_					0	0	0		ENSG00000110448|ENST00000347785|CD5	ENSG00000110448|ENST00000347785|CD5	ENSG00000110448|ENST00000347785|CD5	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.2756652832031	2	497.785721	993.55689	0.44688	0.00022245	2.9858	0.0014863	3.4326	0.0017087	497.78746424861794	68.76	3.0103	65.945	65.361	68.372	-2.8144					76	59	2	0	0	0	0.027462	1	2999	2999		30.504	0	1	25867			27985	2779	22929	22956	31273	31273					0.05985356862061053
LATPRHVVF	9	Unmodified	_LATPRHVVF_					0	0	0			REV__ENST00000542289.1_1_12:13349755-13367993:+|nuORF	REV__ENST00000542289.1_1_12:13349755-13367993:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.7694702148438	2	520.306001	1038.59745	-0.68295	-0.00035534	-4.0583	-0.0021115	-4.7412	-0.0024669	520.3039079010828	55.596	1.1422	52.792	52.182	53.324	-2.804					47	22	3	0	0	0	0.027462	1	3870	3870		10.866	0	1	46013	+		27986	27382	22930	22957	31274	31274					0.07969459296691639
LATPRILL	8	Unmodified	_LATPRILL_					0	0	0			REV__ENSG00000213822|ENST00000396477|CEACAM18	REV__ENSG00000213822|ENST00000396477|CEACAM18	MULTI-MSMS	OvCa9_classI_Rep2	2	448.79998779296875	2	448.80002	895.585488	1.1656	0.00052313	-1.2994	-0.00058316	-0.13374	-6.0023E-05	448.7993403222566	118.17	1.7331	118.03	117.69	119.42	-0.14755					87	34	4	0	0	0	0.66057	1	11371	11371		51.335	3.4199	1	562320	+		27987	23272	22931	22958	31275	31275					0.1335184255351578
LATQQNNLP	9	Unmodified	_LATQQNNLP_					0	0	0		nc|ENSG00000185053|Q96LD1|SGCZ;ENSG00000185053|ENST00000382080|SGCZ	nc|ENSG00000185053|Q96LD1|SGCZ	nc|ENSG00000185053|Q96LD1|SGCZ	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.3053894042969	2	499.766906	997.519259	0.28237	0.00014112	-2.5134	-0.0012561	-2.2311	-0.001115	499.76538365423824	96.533	0.80418	94.107	93.76	94.564	-2.4256					38	15	3	0	0	0	0.027402	1	8559	8559		76.774	25.581	1	126290			27988	8221	22932	22959	31276	31276					0.020399819208023473
LATQQNNLP	9	Unmodified	_LATQQNNLP_					0	0	0		nc|ENSG00000185053|Q96LD1|SGCZ;ENSG00000185053|ENST00000382080|SGCZ	nc|ENSG00000185053|Q96LD1|SGCZ	nc|ENSG00000185053|Q96LD1|SGCZ	MULTI-MATCH	OvCa99_classI_Rep5	1		2	499.766906	997.519259	2.2018	0.0011004	4.5245	0.0022612	6.7263	0.0033616	500.2710841334026	93.911	0.25171	93.911	93.799	94.051	0	-0.082658	0.0064938	NaN	76.774	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221590			27989	8221	22932	22959							0.020399819208023473
LATRGMDILPE	11	Unmodified	_LATRGMDILPE_					0	0	0			REV__tr|A0A553SPU2|A0A553SPU2_NIACIL-cystineuptakeproteinTcyPOS=NialliacirculansOX=1397GN=CEQ21_09270PE=3SV=1	REV__tr|A0A553SPU2|A0A553SPU2_NIACIL-cystineuptakeproteinTcyPOS=NialliacirculansOX=1397GN=CEQ21_09270PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	405.8863220214844	3	405.884913	1214.63291	0.55221	0.00022413	2.4127	0.00097929	2.9649	0.0012034	405.88591487355274	25.818	0.9994	25.818	25.643	26.642	0					47	19	5	0	0	0	0.70032	1	637	637		29.551	2.5034	1	1699500	+		27990	30570	22933	22960	31277	31277					0.03417708971551292
LATRTLQPL	9	Unmodified	_LATRTLQPL_					0	0	0		PHLDB1|p.P441Lfs*20|1|0.05|ENSG00000019144|chr11:118628144-118628144|C/-|frameshift_variant	PHLDB1|p.P441Lfs*20|1|0.05|ENSG00000019144|chr11:118628144-118628144|C/-|frameshift_variant	PHLDB1|p.P441Lfs*20|1|0.05|ENSG00000019144|chr11:118628144-118628144|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	506.8110046386719	2	506.811116	1011.60768	-0.96963	-0.00049142	-0.36531	-0.00018514	-1.3349	-0.00067656	506.8110395873254	89.248	2.4224	87.118	86.702	89.124	-2.1309					173	47	5	0	0	0	0.21395	1	5482	5482		73.975	0	1	9108500			27991	15497	22934	22961	31278	31278					0.10234022231293238
LAVALFQVLPQ	11	Unmodified	_LAVALFQVLPQ_					0	0	0		nc|ENSG00000126895|P30518-2|AVPR2;ENSG00000126895|ENST00000646375|AVPR2;AVPR1B|p.Y112Tfs*17|1|0.56|ENSG00000198049|chr1:206116557-206116557|A/-|frameshift_variant;ENSG00000198049|ENST00000367126|AVPR1B	nc|ENSG00000126895|P30518-2|AVPR2	nc|ENSG00000126895|P30518-2|AVPR2	MULTI-MSMS	OvCa9_classI_Rep2	2	400.2434997558594	3	400.244658	1197.71214	1.3067	0.00052301	-3.2433	-0.0012981	-1.9365	-0.00077509	400.2432245254957	39.743	1.7317	37.033	36.755	38.487	-2.7097					74	34	3	0	0	0	0.69735	1	1987	1987		30.569	5.4429	1	139570			27992	3811	22935	22962	31279	31279					0.12119723987984798
LAVAPRNV	8	Unmodified	_LAVAPRNV_					0	0	0		ENST00000337304.2_1_22:39916921-39917209:+|nuORF	ENST00000337304.2_1_22:39916921-39917209:+|nuORF	ENST00000337304.2_1_22:39916921-39917209:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	420.2598876953125	2	420.25852	838.502486	0.79424	0.00033378	-0.27541	-0.00011574	0.51882	0.00021804	420.2582469559048	72.459	0.62825	72.459	72.249	72.877	0					26	15	2	0	0	0	0.40641	1	7064	7064		86.935	15.557	1	995110			27993	10520	22936	22963	31280	31280					0.07677525825511111
LAVASFPKKQE	11	Unmodified	_LAVASFPKKQE_					0	0	0		ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	MULTI-MSMS	OvCa99_classI_Rep5	1	609.3494262695312	2	609.348063	1216.68157	0.11598	7.0675E-05	-0.14496	-8.8331E-05	-0.028976	-1.7656E-05	609.347846970463	58.51	0.86261	58.51	58.069	58.932	0					53	19	4	0	0	0	0.18124	2	4968	4968;5000		74.165	12.657	1	2235500			27994	2919	22937	22964	31281;31282	31281					0.08189945602930493
LAVASFPKKQE	11	Unmodified	_LAVASFPKKQE_					0	0	0		ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	MULTI-MSMS	OvCa99_classI_Rep5	1	406.568603515625	3	406.567801	1216.68157	1.1463	0.00046603	-0.96603	-0.00039276	0.18022	7.3272E-05	406.56732673923227	58.5	1.2769	58.5	58.027	59.304	0					58	21	4	0	0	0	0.27273	1	4992	4992		70.399	15.676	1	3069900			27995	2919	22937	22964	31283	31283					0.08189945602930493
LAVAVDGHF	9	Unmodified	_LAVAVDGHF_					0	0	0		ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	MULTI-SECPEP	OvCa9_classI_Rep3	3	464.2797546386719	2	464.747985	927.481417	-1.1186	-0.00051986	2.1145	0.00098273	0.99596	0.00046287	464.74941868816273	83.516	0.47914	81.255	80.867	81.346	-2.261					10	9	2	0	0	0	0.027441	1	4730	4730		62.978	10.679	1	17764			27996	4439	22938	22965	31284	31284					0.014775157260032756
LAVDHYNI	8	Unmodified	_LAVDHYNI_					0	0	0		ENSG00000125522|ENST00000684052|NPBWR2	ENSG00000125522|ENST00000684052|NPBWR2	ENSG00000125522|ENST00000684052|NPBWR2	MULTI-SECPEP	OvCa9_classI_Rep3	3	473.2850646972656	2	472.745442	943.476331	-0.40518	-0.00019155	0.26212	0.00012392	-0.14306	-6.763E-05	472.7453939887196	86.829	1.5768	84.653	84.18	85.757	-2.1768					62	30	3	0	0	0	0.028476	1	5256	5256		40.573	29.707	1	216550			27997	3714	22939	22966	31285	31285					0.002332118633717073
LAVDKSASL	9	Unmodified	_LAVDKSASL_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	OvCa99_classI_Rep5	1	452.26202392578125	2	452.260925	902.507297	-0.10854	-4.9087E-05	-0.60837	-0.00027514	-0.71691	-0.00032423	452.26049746417306	65.362	1.0247	65.362	65.034	66.059	0					53	25	4	0	0	0	0.051592	1	5993	5993		117.81	30.057	1	5923700			27998	1329	22940	22967	31286	31286					0.052143651776077604
LAVELLCSM	9	Unmodified	_LAVELLCSM_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.756103515625	2	489.753564	977.492575	0.96492	0.00047257	4.3805	0.0021454	5.3454	0.0026179	489.75553304007275	33.559	2.5913	30.771	30.259	32.85	-2.7881					111	51	3	0	0	0	0.58665	1	928	928		33.516	3.0119	1	83915	+		27999	17630	22941	22968	31287	31287					0.0029283371362680555
LAVEQKPAP	9	Unmodified	_LAVEQKPAP_					0	0	0			REV__nc|ENSG00000006118|Q24JP5-4|TMEM132A	REV__nc|ENSG00000006118|Q24JP5-4|TMEM132A	MULTI-MSMS	OvCa9_classI_Rep2	2	477.7830810546875	2	476.776742	951.538931	0.48207	0.00022984	2.7493	0.0013108	3.2314	0.0015406	476.776256085318	113.03	1.6288	112.91	112.52	114.15	-0.12174					105	32	5	0	0	0	0.50149	1	10710	10710		42.396	1.8235	1	498690	+		28000	16410	22942	22969	31288	31288					0.06122357931565148
LAVGHPPAA	9	Unmodified	_LAVGHPPAA_					0	0	0		ENST00000529336.1_1_8:10971599-11058129:-|nuORF;ENST00000297303.4_1_8:11052685-11058303:-|nuORF	ENST00000529336.1_1_8:10971599-11058129:-|nuORF	ENST00000529336.1_1_8:10971599-11058129:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	416.73828125	2	416.73742	831.460287	3.0561	0.0012736	-0.59424	-0.00024764	2.4619	0.001026	416.73704343174717	84.558	0.61771	84.558	84.345	84.963	0					30	14	3	0	0	0	0.53728	1	8844	8844		39.021	3.8208	1	1326600			28001	10150	22943	22970	31289	31289					0.03781550417136259
LAVHIKPAD	9	Unmodified	_LAVHIKPAD_					0	0	0			REV__ENSG00000182885|ENST00000333493|ADGRG3	REV__ENSG00000182885|ENST00000333493|ADGRG3	MULTI-MSMS	OvCa99_classI_Rep5	1	482.2859191894531	2	482.284734	962.554916	2.4902	0.001201	-0.95183	-0.00045905	1.5383	0.00074192	482.2842582822878	84.565	2.6695	84.565	84.261	86.931	0					144	64	5	0	0	0	0.091859	1	8818	8818		99.375	0	1	48343000	+		28002	22324	22944	22971	31290	31290					0.07214064168454115
LAVHLPDAK	9	Unmodified	_LAVHLPDAK_					0	0	0			REV__ENSG00000147799|ENST00000377307|ARHGAP39	REV__ENSG00000147799|ENST00000377307|ARHGAP39	MULTI-MSMS	OvCa99_classI_Rep5	1	482.2857971191406	2	482.284734	962.554916	2.4902	0.001201	-0.95183	-0.00045905	1.5383	0.00074192	482.2842582822878	84.565	2.6695	84.565	84.261	86.931	0					144	64	5	0	0	0	0.071436	2	8848	8848;8879		106.42	7.0402	1	48343000	+		28003	20083	22945	22972	31291;31292	31291					0.07214064168454115
LAVIKTAAII	10	Unmodified	_LAVIKTAAII_					0	0	0		tr|A0A553SPN4|A0A553SPN4_NIACIAminoacidpermeaseOS=NialliacirculansOX=1397GN=CEQ21_26710PE=4SV=1	tr|A0A553SPN4|A0A553SPN4_NIACIAminoacidpermeaseOS=NialliacirculansOX=1397GN=CEQ21_26710PE=4SV=1	tr|A0A553SPN4|A0A553SPN4_NIACIAminoacidpermeaseOS=NialliacirculansOX=1397GN=CEQ21_26710PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.8121337890625	2	506.841885	1011.66922	0.38757	0.00019644	0.96655	0.00048989	1.3541	0.00068632	507.34147280930574	89.794	0.50007	87.219	86.95	87.45	-2.575					16	9	2	0	0	0	0.026936	1	7716	7716		84.916	18.486	1	18007			28004	34065	22946	22973	31293	31293					0.16384953930560187
LAVKVSEILK	10	Unmodified	_LAVKVSEILK_					0	0	0		tr|A0A7D6ZGK5|A0A7D6ZGK5_9CLOTCobalt-precorrin5AhydrolaseOS=ClostridiumintestinaleOX=36845GN=cbiGPE=4SV=1	tr|A0A7D6ZGK5|A0A7D6ZGK5_9CLOTCobalt-precorrin5AhydrolaseOS=ClostridiumintestinaleOX=36845GN=cbiGPE=4SV=1	tr|A0A7D6ZGK5|A0A7D6ZGK5_9CLOTCobalt-precorrin5AhydrolaseOS=ClostridiumintestinaleOX=36845GN=cbiGPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.3580322265625	2	550.357899	1098.70125	-0.71683	-0.00039451	0.6705	0.00036901	-0.046331	-2.5498E-05	550.3581986959526	124.07	1.0647	122.67	122.37	123.44	-1.3908					42	20	3	0	0	0	0.59317	1	11743	11743		42.864	7.6636	1	73380			28005	35547	22947	22974	31294	31294					0.15584321613710017
LAVLERAES	9	Unmodified	_LAVLERAES_					0	0	0			REV__ENSG00000138061|ENST00000610745|CYP1B1	REV__ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MSMS	OvCa99_classI_Rep5	1	494.27838134765625	2	494.277106	986.53966	1.031	0.0005096	0.55816	0.00027589	1.5892	0.00078548	494.27755965193165	83.411	1.057	83.411	83.078	84.135	0					73	24	4	0	0	0	0.22961	1	8664	8664		71.296	7.9894	1	5233200	+		28006	19504	22948	22975	31295	31295					0.04585152580625618
LAVLKQVN	8	Unmodified	_LAVLKQVN_					0	0	0			REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|65|1|sense	REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|65|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.7590026855469	2	442.781828	883.549102	1.025	0.00045383	-1.0012	-0.00044333	0.023729	1.0507E-05	442.7812866846381	96.965	0.89784	94.54	94.271	95.169	-2.4256					25	17	2	0	0	0	0.028476	1	8562	8562		25.45	6.0902	1	66626	+		28007	28507	22949	22976	31296	31296					0.10266965656796856
LAVLKQVN	8	Unmodified	_LAVLKQVN_					0	0	0			REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|65|1|sense	REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|65|1|sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	442.781828	883.549102	1.4394	0.00063736	-1.7386	-0.00076982	-0.29917	-0.00013247	442.7809459959321	95.482	0.94331	94.454	94.169	95.113	-1.0281	-0.042797	-0.00085821	NaN	25.45	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48807	+		28008	28507	22949	22976							0.10266965656796856
LAVLKQVN	8	Unmodified	_LAVLKQVN_					0	0	0			REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|65|1|sense	REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|65|1|sense	MULTI-MATCH	OvCa9_classI_Rep3	3		2	442.781828	883.549102	-0.57402	-0.00025417	0.3255	0.00014413	-0.24852	-0.00011004	442.78186123942584	96.325	0.96961	94.496	94.221	95.191	-1.8286	-0.00035411	0.00096969	NaN	25.45	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83202	+		28009	28507	22949	22976							0.10266965656796856
LAVLRPQR	8	Unmodified	_LAVLRPQR_					0	0	0			REV__ENSG00000073169|ENST00000380903|SELENOO	REV__ENSG00000073169|ENST00000380903|SELENOO	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.8060607910156	2	476.806168	951.597784	-0.54019	-0.00025756	-0.3732	-0.00017794	-0.91338	-0.00043551	476.80595009891266	41.29	1.8569	38.309	37.918	39.775	-2.9804					79	35	3	0	0	0	0.7043	1	1862	1862		42.474	1.9018	1	1153600	+		28010	16934	22950	22977	31297	31297					0.12004879016558334
LAVLSHMLL	9	Unmodified	_LAVLSHMLL_					0	0	0		ENSG00000170185|ENST00000307017|USP38;nc|ENSG00000170185|Q8NB14-2|USP38	ENSG00000170185|ENST00000307017|USP38	ENSG00000170185|ENST00000307017|USP38	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.3329772949219	2	498.799163	995.583773	-2.6091	-0.0013014	-2.4299	-0.001212	-5.039	-0.0025134	498.79762629362045	126.42	0.38934	125.01	124.78	125.17	-1.4143					11	7	2	0	0	0	0.027462	1	12026	12026		18.324	0	1	13579			28011	7080	22951	22978	31298	31298					0.08580465473244203
LAVLSVLVE	9	Unmodified	_LAVLSVLVE_					0	0	0		nc|ENSG00000188452|Q49MI3-8|CERKL	nc|ENSG00000188452|Q49MI3-8|CERKL	nc|ENSG00000188452|Q49MI3-8|CERKL	MULTI-SECPEP	OvCa9_classI_Rep2	2	471.3108215332031	2	471.797143	941.579734	-1.4751	-0.00069596	-1.4991	-0.00070729	-2.9743	-0.0014033	471.7961788749128	34.179	0.7403	31.469	31.021	31.761	-2.7097					18	14	2	0	0	0	0.027449	1	1276	1276		40.573	16.37	1	12866			28012	15231	22952	22979	31299	31299					0.10660699251184269
LAVNAVEEPK	10	Unmodified	_LAVNAVEEPK_					0	0	0			REV__tr|A0A553SFH3|A0A553SFH3_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_08865PE=3SV=1	REV__tr|A0A553SFH3|A0A553SFH3_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_08865PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.2799682617188	2	535.298039	1068.58152	-0.8219	-0.00043996	3.9019	0.0020887	3.08	0.0016487	535.3002328934041	47.648	1.1117	44.54	43.927	45.039	-3.1077					35	21	2	0	0	0	0.026891	1	2585	2585		24.519	0	1	65367	+		28013	29578	22953	22980	31300	31300					0.04997708269138457
LAVNQQANL	9	Unmodified	_LAVNQQANL_					0	0	0		nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-3|IGF2BP2;nc|ENSG00000073792|Q9Y6M1-4|IGF2BP2;ENSG00000073792|ENST00000382199|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2	nc|ENSG00000073792|Q9Y6M1-6|IGF2BP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.79443359375	2	485.769448	969.524344	-0.30611	-0.0001487	0.73297	0.00035606	0.42687	0.00020736	485.76948697145366	66.509	0.91446	66.509	65.984	66.898	0					31	22	2	0	0	0	0.027462	1	6197	6197		21.96	0	1	776840			28014	1501	22954	22981	31301	31301					0.03836285783427229
LAVNSHPIL	9	Unmodified	_LAVNSHPIL_					0	0	0		ENSG00000147113|ENST00000398000|DIPK2B	ENSG00000147113|ENST00000398000|DIPK2B	ENSG00000147113|ENST00000398000|DIPK2B	MULTI-MSMS	OvCa99_classI_Rep5	1	482.28607177734375	2	482.284734	962.554916	2.4902	0.001201	-0.95183	-0.00045905	1.5383	0.00074192	482.2842582822878	84.565	2.6695	84.565	84.261	86.931	0					144	64	5	0	0	0	0.14998	1	8911	8911		84.916	2.675	1	48343000			28015	5331	22955	22982	31302	31302					0.07214064168476853
LAVQIRPR	8	Unmodified	_LAVQIRPR_					0	0	0			REV__ENST00000587411.5_1_19:5925055-5932565:-|nuORF	REV__ENST00000587411.5_1_19:5925055-5932565:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.80572509765625	2	476.806168	951.597784	-0.54019	-0.00025756	-0.3732	-0.00017794	-0.91338	-0.00043551	476.80595009891266	41.29	1.8569	38.309	37.918	39.775	-2.9804					79	35	3	0	0	0	0.7043	1	1875	1875		42.474	1.9018	1	1153600	+		28016	27874	22956	22983	31303	31303					0.12004879016558334
LAVQRPRL	8	Unmodified	_LAVQRPRL_					0	0	0		ENST00000393432.8_1_5:179050143-179050636:-|nuORF	ENST00000393432.8_1_5:179050143-179050636:-|nuORF	ENST00000393432.8_1_5:179050143-179050636:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	476.8057861328125	2	476.806168	951.597784	0.28578	0.00013626	-0.46686	-0.0002226	-0.18107	-8.6337E-05	476.80579878083404	40.986	1.3783	38.276	37.848	39.226	-2.7097					68	27	3	0	0	0	0.74679	1	2129	2129		28.254	1.4582	1	368580			28017	11246	22957	22984	31304	31304					0.12004879016558334
LAVRHAVPSI	10	Unmodified	_LAVRHAVPSI_					0	0	0			REV__ENSG00000170915|ENST00000442253|PAQR8	REV__ENSG00000170915|ENST00000442253|PAQR8	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.2836303710938	2	531.824558	1061.63456	-0.63174	-0.00033597	-0.10569	-5.6207E-05	-0.73742	-0.00039218	531.8244841967606	64.354	0.2928	64.354	64.21	64.503	0					12	6	2	0	0	0	0.026802	1	5831	5831		34.173	13.226	1	494450	+		28018	21574	22958	22985	31305	31305					0.10621130842469029
LAVSGWAVAL	10	Unmodified	_LAVSGWAVAL_					0	0	0			REV__ENST00000437276.1_2_11:47279534-47280796:+|nuORF	REV__ENST00000437276.1_2_11:47279534-47280796:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	493.7869873046875	2	493.78711	985.559667	-0.2692	-0.00013293	-0.32819	-0.00016205	-0.59738	-0.00029498	493.7867393201552	121.47	1.3357	121.27	120.95	122.29	-0.19718					61	26	3	0	0	0	0.35697	1	11747	11747		73.975	2.0973	1	176810	+		28019	25791	22959	22986	31306	31306					0.06630948311226348
LAVSIRAKN	9	Unmodified	_LAVSIRAKN_					0	0	0		tr|A0A7D6VT24|A0A7D6VT24_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_15205PE=4SV=1	tr|A0A7D6VT24|A0A7D6VT24_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_15205PE=4SV=1	tr|A0A7D6VT24|A0A7D6VT24_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_15205PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.3047790527344	2	486.303458	970.592364	0.86253	0.00041945	2.6071	0.0012679	3.4697	0.0016873	486.3047324036629	126.22	3.5173	125.15	124.71	128.23	-1.0715					158	68	5	0	0	0	0.44294	1	9833	9833		47.916	3.5384	1	3175900			28020	35082	22960	22987	31307	31307					0.10589155434081476
LAVSLLGLR	9	Unmodified	_LAVSLLGLR_					0	0	0			REV__ENSG00000186452|ENST00000398458|TMPRSS12	REV__ENSG00000186452|ENST00000398458|TMPRSS12	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.3106384277344	2	471.310752	940.606951	1.3289	0.00062632	-1.6854	-0.00079433	-0.35646	-0.000168	471.3099028886094	32.057	2.5601	29.362	28.732	31.293	-2.6954					224	67	4	0	0	0	0.53957	1	799	799		38.806	0	1	1074400	+		28021	22587	22961	22988	31308	31308					0.13427227582235446
LAVSVILRV	9	Unmodified	_LAVSVILRV_					0	0	0		ENSG00000081051|ENST00000395792|AFP	ENSG00000081051|ENST00000395792|AFP	ENSG00000081051|ENST00000395792|AFP	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.2968444824219	2	485.326402	968.638252	-0.6589	-0.00031978	0.39807	0.00019319	-0.26083	-0.00012659	485.3264653171959	67.395	1.2338	64.734	64.446	65.68	-2.661					54	24	3	0	0	0	0.027462	1	5233	5233		25.45	7.1258	1	152380			28022	1651	22962	22989	31309	31309					0.1526780061634554
LAVTTGNR	8	Unmodified	_LAVTTGNR_					0	0	0		ENST00000515682.5_1_4:8207046-8242679:+|nuORF;ENSG00000125089|ENST00000245105|SH3TC1;ENST00000502559.1_1_4:8237989-8238388:+|nuORF;ENST00000506360.5_1_4:8234964-8238388:+|nuORF;ENST00000502350.5_1_4:8234964-8242679:+|nuORF	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	416.5514221191406	2	416.237784	830.461016	0.38413	0.00015989	2.8823	0.0011997	3.2665	0.0013596	416.2382642738437	38.302	1.5386	35.376	34.807	36.346	-2.9264					65	30	3	0	0	0	0.028476	1	1576	1576		21.96	0	1	90755			28023	3690	22963	22990	31310	31310					0.03900345066188038
LAVVKQEI	8	Unmodified	_LAVVKQEI_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1;REV__ENST00000367256.9_1_6:152443573-152639413:-|nuORF	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	OvCa99_classI_Rep5	1	450.279541015625	2	450.28166	898.548768	2.046	0.00092128	0.23085	0.00010395	2.2769	0.0010252	450.2815696618192	98.187	0.63861	98.187	97.78	98.419	0					29	14	3	0	0	0	0.32444	1	10799	10799		102.77	8.7669	1	2178800	+		28024	18991;24893	22964	22991	31311	31311					0.09543545936958253
LAVVKQEI	8	Unmodified	_LAVVKQEI_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1;REV__ENST00000367256.9_1_6:152443573-152639413:-|nuORF	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	450.28166	898.548768	1.8323	0.00082507	-1.4863	-0.00066925	0.34605	0.00015582	450.2808032428992	99.122	1.0436	98.229	98.007	99.05	-0.89306	-0.034917	-0.0011148	NaN	102.77	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74645	+		28025	18991;24893	22964	22991							0.09543545936958253
LAVVKQEI	8	Unmodified	_LAVVKQEI_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1;REV__ENST00000367256.9_1_6:152443573-152639413:-|nuORF	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	450.28166	898.548768	-0.38317	-0.00017253	0.11526	5.1899E-05	-0.26791	-0.00012063	450.2814811550388	99.994	0.63751	98.309	98.038	98.675	-1.685	0.044775	0.00032754	NaN	102.77	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74487	+		28026	18991;24893	22964	22991							0.09543545936958253
LAVVKQEI	8	Unmodified	_LAVVKQEI_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1;REV__ENST00000367256.9_1_6:152443573-152639413:-|nuORF	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	450.28166	898.548768	-0.46783	-0.00021065	0.82003	0.00036925	0.35221	0.00015859	450.28178706417566	100.6	0.66964	98.331	98.03	98.7	-2.2665	0.066855	0.00096224	NaN	102.77	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95666	+		28027	18991;24893	22964	22991							0.09543545936958253
LAVYRACIQ	9	Unmodified	_LAVYRACIQ_					0	0	0		sp|C1BEG3|UL74A_HCMVMUncharacterizedproteinUL74AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL74APE=4SV=2	sp|C1BEG3|UL74A_HCMVMUncharacterizedproteinUL74AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL74APE=4SV=2	sp|C1BEG3|UL74A_HCMVMUncharacterizedproteinUL74AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL74APE=4SV=2	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.7694702148438	2	518.784044	1035.55354	-0.73279	-0.00038016	0.58789	0.00030499	-0.1449	-7.5172E-05	518.7842053818559	55.495	0.79289	52.688	52.479	53.272	-2.807					25	15	2	0	0	0	0.027462	1	3870	3870		27.882	6.9353	1	33531			28028	32845	22965	22992	31312	31312					0.03718106808059929
LAWALGDVGLG	11	Unmodified	_LAWALGDVGLG_					0	0	0		tr|A0A553SRV7|A0A553SRV7_NIACIAlanine:cationsymporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01790PE=3SV=1	tr|A0A553SRV7|A0A553SRV7_NIACIAlanine:cationsymporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01790PE=3SV=1	tr|A0A553SRV7|A0A553SRV7_NIACIAlanine:cationsymporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01790PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.3065795898438	2	536.295299	1070.57605	0.20122	0.00010792	-3.8466	-0.0020629	-3.6454	-0.001955	536.2931290910485	76.798	0.83766	74.427	74.295	75.132	-2.3715					25	15	2	0	0	0	0.025239	1	3978	3978		40.778	1.5253	1	240890			28029	34304	22966	22993	31313	31313					0.043580294773164496
LAWCLWNQ	8	Unmodified	_LAWCLWNQ_					0	0	0		ENST00000309862.10_1_17:37829058-37830070:-|nuORF;nc|ENSG00000161395|Q96FM1-2|PGAP3;nc|ENSG00000161395|Q96FM1-3|PGAP3;ENSG00000161395|ENST00000300658|PGAP3	ENST00000309862.10_1_17:37829058-37830070:-|nuORF	ENST00000309862.10_1_17:37829058-37830070:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.3235473632812	2	517.249837	1032.48512	-0.3509	-0.0001815	-2.5855	-0.0013374	-2.9364	-0.0015189	517.7481316296007	105.6	0.19796	103.58	103.45	103.65	-2.0161					5	3	2	0	0	0	0.028476	1	9596	9596		44.531	0.15388	1	6639.6			28030	6128	22967	22994	31314	31314					-0.029821377718235453
LAWIGLNLI	9	Unmodified	_LAWIGLNLI_					0	0	0			REV__ENST00000553478.1_1_15:93856588-94100707:+|nuORF	REV__ENST00000553478.1_1_15:93856588-94100707:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	506.8096008300781	2	506.813128	1011.6117	-1.1259	-0.00057063	-3.6411	-0.0018454	-4.767	-0.002416	506.81130069607957	99.678	3.3722	98.848	98.219	101.59	-0.83051					157	66	4	0	0	0	0.1595	1	9123	9123		83.287	3.348	1	2351400	+		28031	27513	22968	22995	31315	31315					0.1063611172498895
LAWIHALL	8	Unmodified	_LAWIHALL_					0	0	0			REV__EPS15L1-SLC15A5|1|fusion	REV__EPS15L1-SLC15A5|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	469.758056640625	2	468.786913	935.559273	-0.26636	-0.00012487	-3.8113	-0.0017867	-4.0777	-0.0019116	468.78489721134827	54.153	0.74551	54.153	53.929	54.675	0					34	17	3	0	0	0	0.028476	1	4368	4368		33.493	0	1	770680	+		28032	28113	22969	22996	31316	31316					0.08891573382038587
LAWMLLQPK	9	Unmodified	_LAWMLLQPK_					0	0	0			REV__ENST00000512078.5_1_5:59893582-59984814:-|nuORF	REV__ENST00000512078.5_1_5:59893582-59984814:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.8063354492188	2	550.320263	1098.62597	-1.947	-0.0010714	-2.3583	-0.0012978	-4.3052	-0.0023692	550.3187954934192	50.008	1.3476	46.866	46.455	47.803	-3.1416					34	25	2	0	0	0	0.027425	1	2921	2921		50.025	0	1	42299	+		28033	16600	22970	22997	31317	31317					0.08060440881627073
LAWPQPWKLI	10	Unmodified	_LAWPQPWKLI_					0	0	0			REV__ENST00000473880.5_1_7:102113268-102113493:+|nuORF	REV__ENST00000473880.5_1_7:102113268-102113493:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	417.9102783203125	3	417.913131	1250.71756	-1.7632	-0.00073688	-4.4658	-0.0018663	-6.229	-0.0026032	417.91121073978496	35.511	1.2418	32.801	32.553	33.795	-2.7097					63	24	4	0	0	0	0.75313	1	1452	1452		24.519	2.8334	1	264540	+		28034	20688	22971	22998	31318	31318					0.10223447570456301
LAWRLAEL	8	Unmodified	_LAWRLAEL_					0	0	0		nc|ENSG00000143554|Q5K4L6-2|SLC27A3;ENSG00000143554|ENST00000624995|SLC27A3;nc|ENSG00000143554|Q5K4L6-3|SLC27A3;ENST00000468403.1_1_1:153747811-153748660:+|nuORF	nc|ENSG00000143554|Q5K4L6-2|SLC27A3	nc|ENSG00000143554|Q5K4L6-2|SLC27A3	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.3053894042969	2	486.287277	970.560001	0.56745	0.00027595	1.0438	0.00050758	1.6112	0.00078353	486.28631432302797	124.91	0.54273	124.67	124.57	125.11	-0.23589					17	10	2	0	0	0	0.028476	1	12196	12196		57.811	7.7867	1	18108			28035	5072	22972	22999	31319	31319					0.0735436803107632
LAWRLILS	8	Unmodified	_LAWRLILS_					0	0	0		ENST00000216237.9_1_22:41626261-41626363:+|nuORF	ENST00000216237.9_1_22:41626261-41626363:+|nuORF	ENST00000216237.9_1_22:41626261-41626363:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	486.3047790527344	2	486.30547	970.596387	0.86253	0.00041945	-1.5289	-0.00074351	-0.66637	-0.00032406	486.3047324036629	126.22	3.5173	125.15	124.71	128.23	-1.0715					158	68	5	0	0	0	0.47599	1	9886	9886		79.939	16.633	1	3175900			28036	9669	22973	23000	31320	31320					0.10991244927799926
LAWRLILS	8	Unmodified	_LAWRLILS_					0	0	0		ENST00000216237.9_1_22:41626261-41626363:+|nuORF	ENST00000216237.9_1_22:41626261-41626363:+|nuORF	ENST00000216237.9_1_22:41626261-41626363:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.30499267578125	2	486.30547	970.596387	-1.8727	-0.00091069	1.17	0.00056898	-0.70267	-0.00034171	486.3060163931478	126.56	4.5912	125.14	124.48	129.07	-1.4143					192	91	5	0	0	0	0.65582	1	12088	12088		52.299	4.3836	1	3302400			28037	9669	22973	23000	31321	31321					0.10991244927799926
LAWRSLLL	8	Unmodified	_LAWRSLLL_					0	0	0		L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|371|3|anti-sense	L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|371|3|anti-sense	L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|371|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	486.3056945800781	2	486.30547	970.596387	0.60247	0.00029298	-1.3637	-0.00066315	-0.76119	-0.00037017	486.3047947264386	124.97	2.7662	124.74	124.37	127.13	-0.2359					156	55	5	0	0	0	0.73938	1	12270	12270		31.955	1.4512	1	3410600			28038	14732	22974	23001	31322	31322					0.10991244927799926
LAWRSLLL	8	Unmodified	_LAWRSLLL_					0	0	0		L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|371|3|anti-sense	L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|371|3|anti-sense	L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|371|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	486.3047790527344	2	486.30547	970.596387	0.86253	0.00041945	-1.5289	-0.00074351	-0.66637	-0.00032406	486.3047324036629	126.22	3.5173	125.15	124.71	128.23	-1.0715					158	68	5	0	0	0	0.62934	2	9943	9924;9943		57.811	7.7867	1	3175900			28039	14732	22974	23001	31323;31324	31324					0.10991244927799926
LAWRSLLL	8	Unmodified	_LAWRSLLL_					0	0	0		L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|371|3|anti-sense	L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|371|3|anti-sense	L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|371|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.3038635253906	2	486.30547	970.596387	-1.8727	-0.00091069	1.17	0.00056898	-0.70267	-0.00034171	486.3060163931478	126.56	4.5912	125.14	124.48	129.07	-1.4143					192	91	5	0	0	0	0.62934	1	12112	12112		57.811	4.4598	1	3302400			28040	14732	22974	23001	31325	31325					0.10991244927799926
LAYARQVIE	9	Unmodified	_LAYARQVIE_					0	0	0		tr|A0A7D7AAP3|A0A7D7AAP3_9CLOTLysRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12290PE=3SV=1	tr|A0A7D7AAP3|A0A7D7AAP3_9CLOTLysRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12290PE=3SV=1	tr|A0A7D7AAP3|A0A7D7AAP3_9CLOTLysRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12290PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	531.7996826171875	2	531.800749	1061.58694	-2.0802	-0.0011063	3.4629	0.0018415	1.3826	0.00073527	531.8016786180416	117.39	1.3379	117.26	116.72	118.05	-0.12869					51	26	4	0	0	0	0.56889	1	11242	11242		35.618	1.4457	1	182060			28041	36206	22975	23002	31326	31326					0.058614318515992636
LAYKHLFEI	9	Unmodified	_LAYKHLFEI_					0	0	0		L1MB3_dup1513|chr1:246270299-246273131:-|1.1805691521590191|0.3959605958472513|1.58|429.0|183|3|anti-sense	L1MB3_dup1513|chr1:246270299-246273131:-|1.1805691521590191|0.3959605958472513|1.58|429.0|183|3|anti-sense	L1MB3_dup1513|chr1:246270299-246273131:-|1.1805691521590191|0.3959605958472513|1.58|429.0|183|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3225708007812	2	567.321317	1132.62808	-1.2368	-0.00070167	-2.3376	-0.0013261	-3.5744	-0.0020278	567.3201786014721	85.424	2.0958	83.204	82.744	84.84	-2.2204					134	41	5	0	0	0	0.34496	1	5083	5083		57.811	4.8746	1	1900400			28042	14594	22976	23003	31327	31327					0.06707192891099112
LAYLAKVIV	9	Unmodified	_LAYLAKVIV_					0	0	0			REV__ENSG00000196455|ENST00000356763|PIK3R4	REV__ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	OvCa9_classI_Rep2	2	495.3226318359375	2	495.323328	988.632104	-0.33743	-0.00016714	0.094885	4.6999E-05	-0.24255	-0.00012014	495.32325174233563	104.47	2.4848	103.9	103.57	106.06	-0.57639					111	49	3	0	0	0	0.19716	1	9703	9703		76.847	16.553	1	462520	+		28043	22828	22977	23004	31328	31328					0.13733282384805534
LAYLQRIAL	9	Unmodified	_LAYLQRIAL_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2;ENST00000467892.1_1_2:80816479-80835548:+|nuORF	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	OvCa99_classI_Rep5	1	530.8309936523438	2	530.829309	1059.64407	1.3527	0.00071803	0.070513	3.7431E-05	1.4232	0.00075546	530.8291800730535	111.36	0.94769	111.36	111.02	111.97	0					50	20	4	0	0	0	0.013398	2	12667	12641;12667		157.99	75.684	1	1314100			28044	1131	22978	23005	31329;31330	31330					0.1166289912796401
LAYLVLFCI	9	Unmodified	_LAYLVLFCI_					0	0	0			REV__ENSG00000198712|ENST00000361739|MT-CO2	REV__ENSG00000198712|ENST00000361739|MT-CO2	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2749633789062	2	527.803914	1053.59328	-1.0223	-0.00053955	-0.42951	-0.0002267	-1.4518	-0.00076625	527.8039577421165	34.167	0.52279	34.167	33.969	34.491	0					14	10	2	0	0	0	0.027462	1	1643	1643		29.842	0	1	16638	+		28045	23047	22979	23006	31331	31331					0.06862233758761249
LAYLVLFCI	9	Unmodified	_LAYLVLFCI_					0	0	0			REV__ENSG00000198712|ENST00000361739|MT-CO2	REV__ENSG00000198712|ENST00000361739|MT-CO2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	527.803914	1053.59328	-2.8926	-0.0015267	-7.521	-0.0039696	-10.414	-0.0054963	527.8000158185479	36.989	0.39444	34.279	34.041	34.436	-2.7097	0.058427	0.0018245	NaN	29.842	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19936	+		28046	23047	22979	23006							0.06862233758761249
LAYPARPAQL	10	Unmodified	_LAYPARPAQL_					0	0	0		ENSG00000161904|ENST00000293760|LEMD2	ENSG00000161904|ENST00000293760|LEMD2	ENSG00000161904|ENST00000293760|LEMD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.8294677734375	2	550.316566	1098.61858	0.697	0.00038357	0.3892	0.00021418	1.0862	0.00059775	550.3163896808743	81.08	0.37859	81.08	80.827	81.206	0					18	8	3	0	0	0	0.026802	1	8330	8330		42.396	11.892	1	494520			28047	6141	22980	23007	31332	31332					0.07321424605561333
LAYPELLVQF	10	Unmodified	_LAYPELLVQF_					0	0	0			REV__nc|ENSG00000008226|Q9Y238-2|DLEC1	REV__nc|ENSG00000008226|Q9Y238-2|DLEC1	MULTI-MSMS	OvCa99_classI_Rep5	1	596.8353271484375	2	596.834257	1191.65396	2.038	0.0012164	-0.065853	-3.9303E-05	1.9722	0.0011771	596.834156842729	117.42	1.968	117.42	117.09	119.05	0					100	41	5	0	0	0	0.42082	1	13430	13430		65.465	8.7443	1	4303800	+		28048	16447	22981	23008	31333	31333					0.0658004234269356
LAYRSHGVL	9	Unmodified	_LAYRSHGVL_					0	0	0		nc|ENSG00000120942|Q9Y5Z9-2|UBIAD1;ENSG00000120942|ENST00000376810|UBIAD1	nc|ENSG00000120942|Q9Y5Z9-2|UBIAD1	nc|ENSG00000120942|Q9Y5Z9-2|UBIAD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.2688903808594	2	508.287808	1014.56106	0.21616	0.00010987	-2.3693	-0.0012043	-2.1531	-0.0010944	508.2865085266883	96.482	0.90022	94.057	93.811	94.711	-2.4256					30	17	2	0	0	0	0.027462	1	8514	8514		40.573	0	1	121760			28049	3462	22982	23009	31334	31334					0.05436582400000134
LAYSSLFMLL	10	Unmodified	_LAYSSLFMLL_					0	0	0		ENST00000358701.9_2_9:139100252-139100573:-|nuORF	ENST00000358701.9_2_9:139100252-139100573:-|nuORF	ENST00000358701.9_2_9:139100252-139100573:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.3722534179688	2	579.317386	1156.62022	0.70938	0.00041096	-3.8198	-0.0022129	-3.1104	-0.0018019	579.314935879064	115.03	0.74762	115.03	114.79	115.54	0					29	15	3	0	0	0	0.026822	1	13115	13115		30.504	0	1	254010			28050	10740	22983	23010	31335	31335					0.04817297579302249
LAYYKAYDSF	10	Unmodified	_LAYYKAYDSF_					0	0	0			REV__ENSG00000078098|ENST00000188790|FAP	REV__ENSG00000078098|ENST00000188790|FAP	MULTI-MSMS	OvCa9_classI_Rep3	3	620.8040771484375	2	620.797872	1239.58119	2.9545	0.0018341	-0.62903	-0.0003905	2.3255	0.0014436	620.7973066046181	59.56	1.1006	56.461	55.808	56.909	-3.0993					42	28	2	0	0	0	0.72319	1	1967	1967		27.882	3.3631	1	21672	+		28051	17020	22984	23011	31336	31336					-0.029017114507496444
LCALELPR	8	Unmodified	_LCALELPR_					0	0	0		ENST00000295759.11_1_2:220107598-220107923:-|nuORF	ENST00000295759.11_1_2:220107598-220107923:-|nuORF	ENST00000295759.11_1_2:220107598-220107923:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	457.75067138671875	2	457.760038	913.505523	1.6065	0.00073541	2.1575	0.00098761	3.764	0.001723	457.76058897287015	42.598	0.34516	39.889	39.72	40.065	-2.7097					10	6	2	0	0	0	0.028476	1	2317	2317		40.573	5.3719	1	5413.9			28052	10124	22985	23012	31337	31337					0.045310328880191264
LCALMGNVL	9	Unmodified	_LCALMGNVL_					0	0	0		ENSG00000196772|ENST00000641093|OR14A16	ENSG00000196772|ENST00000641093|OR14A16	ENSG00000196772|ENST00000641093|OR14A16	MULTI-MSMS	OvCa99_classI_Rep5	1	467.2496337890625	2	467.248449	932.482345	0.30816	0.00014399	-1.7057	-0.00079699	-1.3976	-0.000653	467.24774327677414	57.873	1.3235	57.873	57.609	58.932	0					69	31	5	0	0	0	0.30002	1	4907	4907		62.978	0.87101	1	2740700			28053	8648	22986	23013	31338	31338					0.0134027077904193
LCAPALTL	8	Unmodified	_LCAPALTL_					0	0	0		nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000460623.5_1_8:144657010-144657124:-|nuORF	nc|ENSG00000147813|Q6XQN6-2|NAPRT	nc|ENSG00000147813|Q6XQN6-2|NAPRT	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.19049072265625	2	401.230582	800.446611	1.3801	0.00055373	3.1908	0.0012802	4.5708	0.001834	401.23176966629984	33.063	0.83617	33.063	32.892	33.728	0					27	16	2	0	0	0	0.028476	1	1518	1518		62.978	0	1	482440			28054	15080	22987	23014	31339	31339					0.03840556593684141
LCAPLPFFIL	10	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))APLPFFIL_	LC(1)APLPFFIL		LC(55)APLPFFIL		0	1	0			REV__LGR4|p.F803Sfs*13|1|0.15|ENSG00000205213|chr11:27368315-27368315|A/-|frameshift_variant	REV__LGR4|p.F803Sfs*13|1|0.15|ENSG00000205213|chr11:27368315-27368315|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	595.8360595703125	2	595.835746	1189.65694	-0.62615	-0.00037308	2.0892	0.0012448	1.4631	0.00087176	595.8369355850919	122.45	1.9732	122.24	121.97	123.94	-0.21803					88	39	3	0	0	0	0.49566	1	11862	11862		54.765	11.9	1	76830	+		28055	23205	22988	23015	31340	31340	273				0.06969594195857098
LCCCKRNVLI	10	Unmodified	_LCCCKRNVLI_					0	0	0			REV__chr5:124062510-124213455|90|11.21|0.0|12.03|-|2|TE_info:L1PA4,L1PA4_dup4151,L1,LINE,donor,+,124213455,124219314|LINC01170,None|93	REV__chr5:124062510-124213455|90|11.21|0.0|12.03|-|2|TE_info:L1PA4,L1PA4_dup4151,L1,LINE,donor,+,124213455,124219314|LINC01170,None|93	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.7491455078125	2	582.806139	1163.59773	-0.36127	-0.00021055	3.3906	0.0019761	3.0293	0.0017655	582.8080590111365	30.806	0.19864	30.806	30.682	30.881	0					5	3	2	0	0	0	0.027117	1	1211	1211		16.473	0	1	15813	+		28056	16059	22989	23016	31341	31341					0.022470516383918948
LCCLGGPKLV	10	Unmodified	_LCCLGGPKLV_					0	0	0			REV__tr|A0A7D6W2N5|A0A7D6W2N5_9CLOTClassISAM-dependentmethyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07015PE=4SV=1	REV__tr|A0A7D6W2N5|A0A7D6W2N5_9CLOTClassISAM-dependentmethyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07015PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.79400634765625	2	501.777373	1001.54019	-0.49912	-0.00025045	4.262	0.0021386	3.7629	0.0018881	501.7793829177295	109.37	0.36882	108.23	107.98	108.35	-1.1444					9	6	2	0	0	0	0.026822	1	7864	7864		30.504	11.144	1	14266	+		28057	31902	22990	23017	31342	31342					0.03948532704464469
LCCLPFPFG	9	Unmodified	_LCCLPFPFG_					0	0	0		ENST00000591590.1_1_19:55997561-55997735:+|nuORF	ENST00000591590.1_1_19:55997561-55997735:+|nuORF	ENST00000591590.1_1_19:55997561-55997735:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.73681640625	2	498.737717	995.460881	-2.7102	-0.0013517	0.75174	0.00037492	-1.9584	-0.00097675	498.7379490618299	36.706	1.6243	33.997	33.745	35.37	-2.7097					56	32	2	0	0	0	0.53728	1	1621	1621		39.021	0.21535	1	78249			28058	14121	22991	23018	31343	31343					-0.037031142496743996
LCDADALYSAL	11	Unmodified	_LCDADALYSAL_					0	0	0			REV__CAMTA1|p.V1621Gfs*12|1|0.03|ENSG00000171735|chr1:7751370-7751371|-/GGGACCACGTGGTTATTCAGCTGGAGTGGGTT|frameshift_variant	REV__CAMTA1|p.V1621Gfs*12|1|0.03|ENSG00000171735|chr1:7751370-7751371|-/GGGACCACGTGGTTATTCAGCTGGAGTGGGTT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	577.3671875	2	577.773539	1153.53253	-1.9415	-0.0011218	0.6171	0.00035655	-1.3244	-0.00076521	577.774154779899	127.11	0.59647	125.68	125.44	126.04	-1.4357					19	11	2	0	0	0	0.02567	1	12118	12118		71.877	0	1	21214	+		28059	15735	22992	23019	31344	31344					-0.03809948082130177
LCDGVLGLLL	10	Unmodified	_LCDGVLGLLL_					0	0	0			REV__ENST00000456101.6_1_6:109766698-109772967:-|nuORF;REV__ENSG00000135596|ENST00000358807|MICAL1	REV__ENSG00000135596|ENST00000358807|MICAL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.7665100097656	2	508.296453	1014.57835	0.70296	0.00035731	3.0512	0.0015509	3.7542	0.0019082	508.2980037460868	36.711	0.4973	33.819	33.496	33.993	-2.8925					12	9	2	0	0	0	0.026939	1	1280	1280		31.955	0	1	10714	+		28060	26025;19302	22993	23020	31345	31345					0.07164741890778714
LCDILPVLR	9	Unmodified	_LCDILPVLR_					0	0	0		ENSG00000175398|ENST00000309675|OR10P1	ENSG00000175398|ENST00000309675|OR10P1	ENSG00000175398|ENST00000309675|OR10P1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.25732421875	2	521.309895	1040.60524	-1.1781	-0.00061418	3.5475	0.0018493	2.3693	0.0012352	521.3121063527352	28.721	0.39873	28.721	28.539	28.937	0					16	7	3	0	0	0	0.027456	1	942	942		47.916	1.9636	1	48563			28061	7542	22994	23021	31346	31346					0.08655850501963869
LCDSCKHPL	9	Unmodified	_LCDSCKHPL_					0	0	0			REV__ENSG00000121864|ENST00000496856|ZNF639	REV__ENSG00000121864|ENST00000496856|ZNF639	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.7978515625	2	508.238612	1014.46267	-0.10827	-5.5027E-05	-1.2695	-0.00064521	-1.3778	-0.00070023	508.23773351644417	109.68	1.1868	109.5	109.07	110.25	-0.17236					49	23	3	0	0	0	0.027462	1	10361	10361		37.159	0	1	46380	+		28062	18562	22995	23022	31347	31347					-0.04398105231723548
LCEDGDIPYTK	11	Unmodified	_LCEDGDIPYTK_					0	0	0		ENST00000457430.2_1_14:21945409-21955635:+|nuORF	ENST00000457430.2_1_14:21945409-21955635:+|nuORF	ENST00000457430.2_1_14:21945409-21955635:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	627.2899780273438	2	627.289553	1252.56455	-0.24332	-0.00015263	3.0395	0.0019066	2.7962	0.001754	627.2913318726058	116.94	1.872	115.57	114.89	116.77	-1.3645					78	35	3	0	0	0	0.7046	1	10942	10942		28.081	1.3886	1	271510			28063	12127	22996	23023	31348	31348					-0.051625803989736596
LCEDVERKMA	10	Unmodified	_LCEDVERKMA_					0	0	0		ENSG00000214866|ENST00000399143|DCDC2C	ENSG00000214866|ENST00000399143|DCDC2C	ENSG00000214866|ENST00000399143|DCDC2C	MULTI-SECPEP	OvCa9_classI_Rep4_	4	596.3305053710938	2	597.286291	1192.55803	-0.22979	-0.00013725	0.47317	0.00028262	0.24337	0.00014536	597.7869073931327	73.804	0.80589	70.408	70.124	70.93	-3.3961					30	16	3	0	0	0	0.027021	1	5708	5708		29.15	0	1	44550			28064	9187	22997	23024	31349	31349					-0.03054796831315798
LCFFRFLL	8	Unmodified	_LCFFRFLL_					0	0	0			REV__chr14:94062621-94065779|133|19.53|0.06|8.3|-|0|TE_info:L1PB1,L1PB1_dup11175,L1,LINE,donor,+,94065779,94071367|DDX24,None|71	REV__chr14:94062621-94065779|133|19.53|0.06|8.3|-|0|TE_info:L1PB1,L1PB1_dup11175,L1,LINE,donor,+,94065779,94071367|DDX24,None|71	MULTI-MSMS	OvCa99_classI_Rep5	1	529.7972412109375	2	529.796423	1057.57829	3.229	0.0017107	-3.0842	-0.001634	0.14482	7.6723E-05	529.7940408594311	97.493	1.7045	97.493	96.543	98.247	0					73	39	3	0	0	0	0.59103	1	10721	10721		65.897	15.873	1	2200900	+		28065	15911	22998	23025	31350	31350					0.051807866814442605
LCFLKFSQLL	10	Unmodified	_LCFLKFSQLL_					0	0	0			REV__ENST00000369878.8_1_10:104837250-104837358:+|nuORF	REV__ENST00000369878.8_1_10:104837250-104837358:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3474731445312	2	606.346477	1210.6784	0.43475	0.00026361	-1.1144	-0.00067571	-0.67964	-0.0004121	606.3456901284329	58.226	1.2551	54.881	54.596	55.852	-3.3449					78	24	5	0	0	0	0.62712	1	3824	3824		19.997	0	1	782000	+		28066	24951	22999	23026	31351	31351					0.08148979224597497
LCFLSNKLI	9	Unmodified	_LCFLSNKLI_					0	0	0			REV__chr1:121538420-121539658|311|22.96|0.14|7.31|+|1|TE_info:MER92A,MER92A_dup4,ERV1,LTR,acceptor,+,121539658,121539920|EMBP1,None|4	REV__chr1:121538420-121539658|311|22.96|0.14|7.31|+|1|TE_info:MER92A,MER92A_dup4,ERV1,LTR,acceptor,+,121539658,121539920|EMBP1,None|4	MULTI-MSMS	OvCa99_classI_Rep5	1	525.8049926757812	2	525.804445	1049.59434	-0.12238	-6.4348E-05	1.3144	0.00069112	1.192	0.00062678	525.804986234643	20.706	0.17575	20.706	20.6	20.776	0					9	6	2	0	0	0	0.7044	1	49	49		16.473	2.6978	1	22334	+		28067	15797	23000	23027	31352	31352					0.07152448127681055
LCFLSNKLI	9	Unmodified	_LCFLSNKLI_					0	0	0			REV__chr1:121538420-121539658|311|22.96|0.14|7.31|+|1|TE_info:MER92A,MER92A_dup4,ERV1,LTR,acceptor,+,121539658,121539920|EMBP1,None|4	REV__chr1:121538420-121539658|311|22.96|0.14|7.31|+|1|TE_info:MER92A,MER92A_dup4,ERV1,LTR,acceptor,+,121539658,121539920|EMBP1,None|4	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	525.804445	1049.59434	-0.12238	-6.4348E-05	1.3144	0.00069112	1.192	0.00062678	525.804986234643	20.706	0.17575	20.706	20.6	20.776	0	0	0	NaN	16.473	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22334	+		28068	15797	23000	23027							0.07152448127681055
LCFPELINL	9	Unmodified	_LCFPELINL_					0	0	0			REV__nc|ENSG00000118961|Q9H6V9-4|LDAH	REV__nc|ENSG00000118961|Q9H6V9-4|LDAH	MULTI-MSMS	OvCa99_classI_Rep5	1	531.29052734375	2	531.288628	1060.5627	-0.36768	-0.00019535	4.2722	0.0022698	3.9045	0.0020744	531.2908263288952	58.924	0.64859	58.924	58.655	59.304	0					36	16	3	0	0	0	0.33652	1	5028	5028		58.782	0.55203	1	3590000	+		28069	18422	23001	23028	31353	31353					0.03484455373745732
LCFPELINL	9	Unmodified	_LCFPELINL_					0	0	0			REV__nc|ENSG00000118961|Q9H6V9-4|LDAH	REV__nc|ENSG00000118961|Q9H6V9-4|LDAH	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	531.288628	1060.5627	-0.36768	-0.00019535	4.2722	0.0022698	3.9045	0.0020744	531.2908263288952	58.924	0.64859	58.924	58.655	59.304	0	0	0	NaN	58.782	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3590000	+		28070	18422	23001	23028							0.03484455373745732
LCGHHFHGNHS	11	Unmodified	_LCGHHFHGNHS_					0	0	0		ENST00000491814.1_1_10:116056685-116061337:-|nuORF	ENST00000491814.1_1_10:116056685-116061337:-|nuORF	ENST00000491814.1_1_10:116056685-116061337:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.9085693359375	3	415.849196	1244.52576	0.42315	0.00017597	3.5944	0.0014947	4.0176	0.0016707	416.1839037714783	42.905	0.39098	42.905	42.709	43.1	0					16	8	2	0	0	0	0.02596	1	2800	2800		12.433	4.7534	1	97360			28071	12716	23002	23029	31354	31354					-0.08672403399464201
LCGLHWRKI	9	Unmodified	_LCGLHWRKI_					0	0	0		ENST00000307834.9_1_2:192551145-192551184:+|nuORF	ENST00000307834.9_1_2:192551145-192551184:+|nuORF	ENST00000307834.9_1_2:192551145-192551184:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	563.31884765625	2	563.321128	1124.6277	1.2142	0.000684	-3.3282	-0.0018748	-2.114	-0.0011908	563.3191568945346	158.92	3.1151	158.92	156.55	159.66	0					133	63	5	0	0	0	0.55588	1	18652	18652		37.159	0.71236	1	3146600			28072	10260	23003	23030	31355	31355					0.07037494690257518
LCGLLLLPEF	10	Unmodified	_LCGLLLLPEF_					0	0	0			REV__Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|223|3|anti-sense	REV__Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|223|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.3216552734375	2	559.319928	1116.6253	1.1752	0.00065733	-0.21083	-0.00011792	0.9644	0.00053941	559.3210472875452	112.15	1.3731	110.64	110.32	111.69	-1.5111					54	26	3	0	0	0	0.47435	1	10367	10367		57.811	11.859	1	308030	+		28073	28182	23004	23031	31356	31356					0.07165601441943181
LCGLLLLPEF	10	Unmodified	_LCGLLLLPEF_					0	0	0			REV__Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|223|3|anti-sense	REV__Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|223|3|anti-sense	MULTI-MATCH	OvCa9_classI_Rep3	3		2	559.319928	1116.6253	1.2234	0.0006843	-0.81804	-0.00045755	0.40541	0.00022675	559.3210639387117	111.73	1.382	110.62	110.25	111.63	-1.1038	0.012914	-0.00029769	NaN	57.811	60	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	293710	+		28074	28182	23004	23031							0.07165601441943181
LCGPPGSGK	9	Unmodified	_LCGPPGSGK_					0	0	0		DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.F3496Wfs*92|1|0.14|ENSG00000197102|chr14:102034043-102034044|-/GACCTGGCAGCTGTCGAGGC|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.2176208496094	2	408.207638	814.400723	0.79529	0.00032464	-3.41	-0.001392	-2.6147	-0.0010673	408.20549784736926	53.919	0.23407	53.919	53.774	54.008	0					7	5	2	0	0	0	0.027448	1	4319	4319		63.306	15.391	1	86801			28075	767	23005	23032	31357	31357					-0.013900885885504977
LCGVALFSY	9	Unmodified	_LCGVALFSY_					0	0	0		tr|A0A553SKH9|A0A553SKH9_NIACILatecompetenceproteinComEROS=NialliacirculansOX=1397GN=CEQ21_18875PE=3SV=1	tr|A0A553SKH9|A0A553SKH9_NIACILatecompetenceproteinComEROS=NialliacirculansOX=1397GN=CEQ21_18875PE=3SV=1	tr|A0A553SKH9|A0A553SKH9_NIACILatecompetenceproteinComEROS=NialliacirculansOX=1397GN=CEQ21_18875PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.75457763671875	2	486.746596	971.478639	0.73219	0.00035639	-3.3724	-0.0016415	-2.6402	-0.0012851	486.7448770230365	152.79	0.47562	152.79	152.52	153	0					13	12	2	0	0	0	0.027462	1	17885	17885		24.203	1.1603	1	53643			28076	33617	23006	23033	31358	31358					-0.008240757231760654
LCHALGWPS	9	Unmodified	_LCHALGWPS_					0	0	0			REV__ENST00000315150.9_1_3:128809278-128809476:-|nuORF	REV__ENST00000315150.9_1_3:128809278-128809476:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.28887939453125	2	492.242012	982.469472	1.098	0.00054047	0.60729	0.00029894	1.7053	0.00083941	492.24200721462137	111.4	0.44994	111.4	111.16	111.6	0					11	9	2	0	0	0	0.027462	1	12656	12656		30.504	0	1	82397	+		28077	24392	23007	23034	31359	31359					-0.022464242888418084
LCHAPWCLE	9	Unmodified	_LCHAPWCLE_					0	0	0			REV__ENST00000513432.5_1_18:13059017-13124766:+|nuORF	REV__ENST00000513432.5_1_18:13059017-13124766:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.8230590820312	2	536.241155	1070.46776	-1.8398	-0.00098656	-4.3254	-0.0023195	-6.1652	-0.003306	536.2388883506758	120.51	0.31358	119.16	118.98	119.29	-1.3444					9	5	2	0	0	0	0.027456	1	11339	11339		35.201	0	1	17512	+		28078	17510	23008	23035	31360	31360					-0.06465801369131441
LCHFSKGML	9	Unmodified	_LCHFSKGML_					0	0	0		chr15:53523322-53540662|224|18.24|0.17|6.76|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|50	chr15:53523322-53540662|224|18.24|0.17|6.76|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|50	chr15:53523322-53540662|224|18.24|0.17|6.76|-|0|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|50	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.287353515625	2	518.259348	1034.50414	-1.3191	-0.00068366	0.14276	7.3986E-05	-1.1764	-0.00060967	518.2600916488698	34.835	0.32497	34.835	34.632	34.957	0					9	6	2	0	0	0	0.027456	1	1708	1708		38.806	0	1	73167			28079	356	23009	23036	31361	31361					-0.011729244723710508
LCHKILILL	9	Unmodified	_LCHKILILL_					0	0	0		ENSG00000178795|ENST00000315938|GDPD4;nc|ENSG00000178795|Q6W3E5|GDPD4	ENSG00000178795|ENST00000315938|GDPD4	ENSG00000178795|ENST00000315938|GDPD4	MULTI-MSMS	OvCa9_classI_Rep2	2	533.347412109375	2	533.34628	1064.67801	-0.6187	-0.00032998	3.5676	0.0019028	2.9489	0.0015728	533.348160054999	92.553	1.6565	91.385	91.024	92.68	-1.168					102	31	5	0	0	0	0.11842	3	8273	8225;8260;8273		92.191	23.462	1	1110800			28080	7776	23010	23037	31362;31363;31364	31364					0.14825604295401718
LCHLGDLGHM	10	Oxidation (M)	_LCHLGDLGHM(Oxidation (M))_		LCHLGDLGHM(1)		LCHLGDLGHM(74)	0	0	1		tr|A0A7D7A300|A0A7D7A300_9CLOTMBLfoldmetallo-hydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21495PE=4SV=1	tr|A0A7D7A300|A0A7D7A300_9CLOTMBLfoldmetallo-hydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21495PE=4SV=1	tr|A0A7D7A300|A0A7D7A300_9CLOTMBLfoldmetallo-hydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21495PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	556.255615234375	2	556.254794	1110.49503	1.6899	0.00093999	-0.77757	-0.00043252	0.91229	0.00050747	556.2542553723156	119.68	0.80444	119.68	119.38	120.18	0					49	19	3	0	0	0	0.35697	1	13740	13740		73.975	13.681	1	1007900			28081	36097	23011	23038	31365	31365		779			-0.05579317828710373
LCHLGDLGHM	10	Oxidation (M)	_LCHLGDLGHM(Oxidation (M))_					0	0	1		tr|A0A7D7A300|A0A7D7A300_9CLOTMBLfoldmetallo-hydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21495PE=4SV=1	tr|A0A7D7A300|A0A7D7A300_9CLOTMBLfoldmetallo-hydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21495PE=4SV=1	tr|A0A7D7A300|A0A7D7A300_9CLOTMBLfoldmetallo-hydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21495PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	556.254794	1110.49503	0.77971	0.00043372	3.4874	0.0019399	4.2671	0.0023736	556.2564365276049	120.54	0.34212	119.52	119.27	119.61	-1.0271	-0.079593	0.004537	NaN	73.975	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18787			28082	36097	23011	23038				779			-0.05579317828710373
LCHPASTYN	9	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))HPASTYN_	LC(1)HPASTYN		LC(44)HPASTYN		0	1	0			REV__ENSG00000198753|ENST00000361971|PLXNB3	REV__ENSG00000198753|ENST00000361971|PLXNB3	MULTI-MSMS	OvCa9_classI_Rep2	2	531.7379150390625	2	531.737291	1061.46003	0.0073479	3.9071E-06	0.90633	0.00048193	0.91368	0.00048584	531.7375688517346	129.89	1.6824	129.66	129.07	130.75	-0.22697					67	33	3	0	0	0	0.48324	1	12781	12781		44.117	9.9443	1	62425	+		28083	23057	23012	23039	31366	31366	271				-0.0682423736502642
LCHVKIREN	9	Unmodified	_LCHVKIREN_					0	0	0		nc|ENSG00000153930|Q8N957-2|ANKFN1;ENSG00000153930|ENST00000682825|ANKFN1	nc|ENSG00000153930|Q8N957-2|ANKFN1	nc|ENSG00000153930|Q8N957-2|ANKFN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.2555541992188	2	556.305675	1110.5968	1.5893	0.00088412	-0.86118	-0.00047908	0.72809	0.00040504	556.3049159906368	119.18	1.1109	119.18	118.77	119.88	0					57	25	5	0	0	0	0.027402	1	13765	13765		76.774	0	1	1531400			28084	5702	23013	23040	31367	31367					0.045922965853606
LCICREIM	8	Unmodified	_LCICREIM_					0	0	0			REV__nc|ENSG00000070748|P28329-3|CHAT	REV__nc|ENSG00000070748|P28329-3|CHAT	MSMS	OvCa9_classI_Rep4_	4	490.7408447265625	2	490.739934	979.465314	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.973	1	46.832	46.332	47.332	-3.1416								0	0	0	0.27318	1	2848	2848		97.473	9.7763	1		+		28085	16888	23014	23041	31368	31368					-0.025239730984139896
LCIFIFQKVT	10	Unmodified	_LCIFIFQKVT_					0	0	0			REV__tr|A0A7D6VNP0|A0A7D6VNP0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13400PE=4SV=1	REV__tr|A0A7D6VNP0|A0A7D6VNP0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13400PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	404.56787109375	3	404.566744	1210.6784	1.4857	0.00060107	-1.779	-0.00071973	-0.29331	-0.00011866	404.5660077907759	58.263	1.5035	54.918	54.546	56.049	-3.3449					68	29	3	0	0	0	0.59317	1	3823	3823		42.864	12.295	1	954190	+		28086	31196	23015	23042	31369	31369					0.0814897922457476
LCIFWRSVL	9	Unmodified	_LCIFWRSVL_					0	0	0			REV__nc|ENSG00000139835|Q5TC63-2|GRTP1	REV__nc|ENSG00000139835|Q5TC63-2|GRTP1	MULTI-SECPEP	OvCa9_classI_Rep3	3	569.2872314453125	2	568.817887	1135.62122	-0.17065	-9.7067E-05	1.2585	0.00071583	1.0878	0.00061877	568.8183951170097	103.43	0.94566	102	101.71	102.66	-1.4347					36	17	3	0	0	0	0.027462	1	7130	7130		29.15	14.285	1	141630	+		28087	19636	23016	23043	31370	31370					0.05883556738876905
LCIFWRSVL	9	Unmodified	_LCIFWRSVL_					0	0	0			REV__nc|ENSG00000139835|Q5TC63-2|GRTP1	REV__nc|ENSG00000139835|Q5TC63-2|GRTP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	568.817887	1135.62122	-1.3776	-0.00078358	1.6393	0.00093245	0.26171	0.00014886	568.8184341945675	102.64	0.7888	101.96	101.74	102.53	-0.68459	-0.0011073	0.00047813	NaN	29.15	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132080	+		28088	19636	23016	23043							0.05883556738876905
LCISELAAL	9	Unmodified	_LCISELAAL_					0	0	0			REV__ENST00000396821.7_1_22:38879929-38880097:-|nuORF	REV__ENST00000396821.7_1_22:38879929-38880097:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	466.7588195800781	2	466.759704	931.504854	-0.3019	-0.00014091	1.0345	0.00048286	0.73258	0.00034194	466.7601856124712	29.574	0.49757	29.574	29.337	29.835	0					16	9	3	0	0	0	0.36502	1	1062	1062		55.504	0	1	219530	+		28089	25337	23017	23044	31371	31371					0.03636193448301128
LCIVAVLRH	9	Unmodified	_LCIVAVLRH_					0	0	0		MED12|p.K1768Qfs*3|1|0.17|ENSG00000184634|chrX:71136550-71136551|-/C|frameshift_variant;nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12;ENST00000462984.1_1_X:70346235-70347318:+|nuORF	MED12|p.K1768Qfs*3|1|0.17|ENSG00000184634|chrX:71136550-71136551|-/C|frameshift_variant	MED12|p.K1768Qfs*3|1|0.17|ENSG00000184634|chrX:71136550-71136551|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.3128051757812	2	512.310229	1022.60591	0.7933	0.00040642	2.7793	0.0014239	3.5726	0.0018303	512.3115033647524	35.959	0.94899	33.11	32.79	33.739	-2.849					50	18	4	0	0	0	0.59983	1	1185	1185		31.955	8.9124	1	358410			28090	8177	23018	23045	31372	31372					0.09550689941670498
LCIWVEETL	9	Unmodified	_LCIWVEETL_					0	0	0			REV__ENST00000510871.5_1_4:40468688-40631461:-|nuORF	REV__ENST00000510871.5_1_4:40468688-40631461:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.2216796875	2	553.283543	1104.55253	-0.7512	-0.00041563	-1.3133	-0.00072662	-2.0645	-0.0011422	553.2828954143198	124.3	0.61992	122.91	122.77	123.39	-1.3908					21	11	3	0	0	0	0.027462	1	11829	11829		40.573	8.6178	1	44012	+		28091	26948	23019	23046	31373	31373					0.004438476485120191
LCKKWVPN	8	Unmodified	_LCKKWVPN_					0	0	0			REV__ENST00000498694.1_1_1:41474453-41475914:+|nuORF	REV__ENST00000498694.1_1_1:41474453-41475914:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.2873229980469	2	494.275855	986.537157	0.4187	0.00020695	0.83337	0.00041192	1.2521	0.00061887	494.27608427109556	86.804	1.5404	84.177	83.762	85.303	-2.6269					67	30	3	0	0	0	0.028476	1	7426	7426		50.025	12.213	1	376220	+		28092	21645	23020	23047	31374	31374					0.043350256419671496
LCKKWVPN	8	Unmodified	_LCKKWVPN_					0	0	0			REV__ENST00000498694.1_1_1:41474453-41475914:+|nuORF	REV__ENST00000498694.1_1_1:41474453-41475914:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	494.275855	986.537157	-0.62744	-0.00031013	2.4985	0.001235	1.8711	0.00092484	494.27700093155005	85.733	1.7325	84.242	83.801	85.534	-1.4906	0.13921	0.00019953	NaN	50.025	85	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214360	+		28093	21645	23020	23047							0.043350256419671496
LCKKWVPN	8	Unmodified	_LCKKWVPN_					0	0	0			REV__ENST00000498694.1_1_1:41474453-41475914:+|nuORF	REV__ENST00000498694.1_1_1:41474453-41475914:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	494.275855	986.537157	-1.2856	-0.00063542	6.6158	0.00327	5.3302	0.0026346	494.27762626640794	86.111	1.3045	83.89	83.586	84.89	-2.2204	-0.21287	0.0042696	NaN	50.025	56	25	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	355110	+		28094	21645	23020	23047							0.043350256419671496
LCKKYISSV	9	Unmodified	_LCKKYISSV_					0	0	0		MER4A1_dup1701|chr13:22892801-22893203:+|2.555759800461922|0.1586828425988767|4.01|411.0|15|1|anti-sense	MER4A1_dup1701|chr13:22892801-22893203:+|2.555759800461922|0.1586828425988767|4.01|411.0|15|1|anti-sense	MER4A1_dup1701|chr13:22892801-22893203:+|2.555759800461922|0.1586828425988767|4.01|411.0|15|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.822509765625	2	520.794078	1039.5736	0.6247	0.00032534	-1.8602	-0.00096876	-1.2355	-0.00064342	520.7927273593136	132.75	0.47926	132.75	132.51	132.99	0					18	9	2	0	0	0	0.027462	1	15418	15418		15.642	0	1	81844			28095	14832	23021	23048	31375	31375					0.05539857747999122
LCKNRLVSGG	10	Unmodified	_LCKNRLVSGG_					0	0	0		nc|ENSG00000241322|O95170-2|FBXW10B;ENST00000574478.1_1_17:18651366-18682393:+|nuORF;ENSG00000241322|ENST00000395906|FBXW10B;nc|ENSG00000171931|Q5XX13-3|FBXW10;nc|ENSG00000171931|Q5XX13-4|FBXW10;ENSG00000171931|ENST00000395665|FBXW10;nc|ENSG00000171931|Q5XX13-2|FBXW10	nc|ENSG00000241322|O95170-2|FBXW10B	nc|ENSG00000241322|O95170-2|FBXW10B	MULTI-SECPEP	OvCa9_classI_Rep3	3	523.8087768554688	2	523.792401	1045.57025	-0.10844	-5.6802E-05	-2.3346	-0.0012229	-2.4431	-0.0012797	523.7926152665951	79.411	0.85802	77.071	76.705	77.563	-2.3399					24	16	2	0	0	0	0.026849	1	4245	4245		40.778	9.2484	1	49612			28096	7250	23022	23049	31376	31376					0.04928607694000675
LCKVKPPVM	9	Unmodified	_LCKVKPPVM_					0	0	0			REV__nc|ENSG00000184182|Q969M7-4|UBE2F	REV__nc|ENSG00000184182|Q969M7-4|UBE2F	MULTI-MSMS	OvCa9_classI_Rep3	3	507.7960510253906	2	507.795566	1013.57658	0.46567	0.00023646	-1.6036	-0.00081431	-1.1379	-0.00057784	507.79468027624847	128.34	1.2845	127.25	126.97	128.26	-1.0933					67	25	4	0	0	0	0.59983	1	10135	10135		31.955	2.8053	1	352990	+		28097	22409	23023	23050	31377	31377					0.07033409601183394
LCKVRSKSI	9	Unmodified	_LCKVRSKSI_					0	0	0			REV__ENSG00000170264|ENST00000404929|FAM161A	REV__ENSG00000170264|ENST00000404929|FAM161A	MULTI-MSMS	OvCa9_classI_Rep2	2	517.310791015625	2	517.312969	1032.61138	0.010128	5.2392E-06	-3.4744	-0.0017973	-3.4642	-0.0017921	517.3110169376656	31.938	1.2365	29.228	28.986	30.222	-2.7097					60	24	4	0	0	0	0.5811	1	1049	1049		34.173	0.65696	1	305470	+		28098	21525	23024	23051	31378	31378					0.09638368733499192
LCLCLIISL	9	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))LCLIISL_	LC(0.998)LC(0.002)LIISL		LC(27)LC(-27)LIISL		0	1	0			REV__ENST00000607830.1_1_5:43034579-43034714:+|nuORF	REV__ENST00000607830.1_1_5:43034579-43034714:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	524.300537109375	2	524.300681	1046.58681	2.3525	0.0012334	0.55865	0.0002929	2.9112	0.0015263	524.300774422991	96.219	0.75742	96.219	95.826	96.584	0					36	17	3	0	0	0	0.39645	1	10532	10532		52.299	6.3269	2	945120	+		28099	28091	23025	23052	31379	31379	344				0.06537972535761583
LCLCLIISL	9	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))LCLIISL_					0	1	0			REV__ENST00000607830.1_1_5:43034579-43034714:+|nuORF	REV__ENST00000607830.1_1_5:43034579-43034714:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	524.300681	1046.58681	2.3525	0.0012334	0.55865	0.0002929	2.9112	0.0015263	524.300774422991	96.219	0.75742	96.219	95.826	96.584	0	0	0	NaN	52.299	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	945120	+		28100	28091	23025	23052			344				0.06537972535761583
LCLCQVLES	9	Unmodified	_LCLCQVLES_					0	0	0		L1PA8_dup7672|chr19:21549449-21550650:-|1.0893067253068611|0.363832208290546|1.58|386.0|41|1|anti-sense	L1PA8_dup7672|chr19:21549449-21550650:-|1.0893067253068611|0.363832208290546|1.58|386.0|41|1|anti-sense	L1PA8_dup7672|chr19:21549449-21550650:-|1.0893067253068611|0.363832208290546|1.58|386.0|41|1|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	504.2488098144531	2	504.248646	1006.48274	-0.49821	-0.00025122	0.85451	0.00043089	0.3563	0.00017966	504.2489377404503	38.556	0.85549	38.556	38.207	39.063	0					47	18	4	0	0	0	0.074342	1	2201	2201		104.75	3.1458	1	563670			28101	14767	23026	23053	31380	31380					-0.02024354291779673
LCLFLVLEL	9	Unmodified	_LCLFLVLEL_					0	0	0		ENST00000581166.5_1_17:56423483-56423582:-|nuORF	ENST00000581166.5_1_17:56423483-56423582:-|nuORF	ENST00000581166.5_1_17:56423483-56423582:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	531.8162231445312	2	531.817021	1061.61949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.73	1	135.19	134.69	135.69	-1.5437								0	0	0	0.20692	1	13272	13272		25.45	1.2474	1				28102	13993	23027	23054	31381	31381					0.09114502930242452
LCLGWGWHR	9	Unmodified	_LCLGWGWHR_					0	0	0			REV__ENSG00000093010|ENST00000361682|COMT	REV__ENSG00000093010|ENST00000361682|COMT	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.2716674804688	2	564.282003	1126.54945	2.4659	0.0013915	4.0753	0.0022996	6.5413	0.0036911	564.2839951487427	100.34	0.29527	100.34	100.15	100.44	0					10	6	2	0	0	0	0.027462	1	11105	11105		18.324	0.95945	1	253430	+		28103	17274	23028	23055	31382	31382					-0.008759378949889651
LCLKNLHLV	9	Unmodified	_LCLKNLHLV_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.3416137695312	2	526.817887	1051.62122	-1.6333	-0.00086047	-1.1945	-0.00062929	-2.8278	-0.0014898	527.3189144951974	86.969	0.7065	84.792	84.38	85.087	-2.1768					18	13	2	0	0	0	0.027449	1	5209	5209		40.573	0	1	40421			28104	8395	23029	23056	31383	31383					0.09747556738852836
LCLLPMPSM	9	Unmodified	_LCLLPMPSM_					0	0	0			REV__tr|A0A553SPI9|A0A553SPI9_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_26505PE=4SV=1	REV__tr|A0A553SPI9|A0A553SPI9_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_26505PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.2304992675781	2	502.75251	1003.49047	-1.7948	-0.00090233	0.55339	0.00027822	-1.2414	-0.00062411	503.25402439907725	48.953	0.26173	45.842	45.653	45.915	-3.1114					6	4	2	0	0	0	0.027441	1	2734	2734		52.299	0	1	12925	+		28105	30540	23030	23057	31384	31384					-0.01113918295845906
LCLLPRNLRI	10	Unmodified	_LCLLPRNLRI_					0	0	0		ENST00000606377.6_3_11:31832493-31832604:-|nuORF	ENST00000606377.6_3_11:31832493-31832604:-|nuORF	ENST00000606377.6_3_11:31832493-31832604:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	605.8724365234375	2	605.876268	1209.73798	-4.4327	-0.0026857	-2.6387	-0.0015988	-7.0715	-0.0042844	605.8745511795182	157.17	1.2501	156	155.65	156.91	-1.1707					83	31	4	0	0	0	0.81289	1	13580	13580		17.365	2.5001	1	204530			28106	14275	23031	23058	31385	31385					0.14150294958608356
LCLPEATAL	9	Unmodified	_LCLPEATAL_					0	0	0			REV__ENSG00000223611|ENST00000486479|SUPT20HL2;REV__nc|ENSG00000223731|Q3ZLR7|SUPT20HL1	REV__nc|ENSG00000223731|Q3ZLR7|SUPT20HL1	MULTI-MSMS	OvCa9_classI_Rep2	2	465.7518615722656	2	465.751879	929.489204	-0.59884	-0.00027891	3.8562	0.001796	3.2574	0.0015171	465.75348977247216	47.109	0.79227	44.399	44.192	44.984	-2.7097					37	15	3	0	0	0	0.36502	1	2869	2869		55.504	6.0627	1	315460	+		28107	23354;23355	23032	23059	31386	31386					0.021639069312413994
LCLRGGLPF	9	Unmodified	_LCLRGGLPF_					0	0	0		ENST00000334512.9_1_10:81073174-81073993:+|nuORF	ENST00000334512.9_1_10:81073174-81073993:+|nuORF	ENST00000334512.9_1_10:81073174-81073993:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	488.7331237792969	2	488.275855	974.537157	-0.20548	-0.00010033	-3.9882	-0.0019473	-4.1936	-0.0020476	488.2738577189064	39.702	0.99357	36.992	36.755	37.749	-2.7097					31	19	2	0	0	0	0.027462	1	1961	1961		40.573	16.37	1	63180			28108	10483	23033	23060	31387	31387					0.048870256419718316
LCLSCAPRPSL	11	Unmodified	_LCLSCAPRPSL_					0	0	0		ENST00000565736.1_1_16:29815990-29816668:+|nuORF	ENST00000565736.1_1_16:29815990-29816668:+|nuORF	ENST00000565736.1_1_16:29815990-29816668:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	580.30224609375	2	580.301744	1158.58893	-1.4545	-0.00084403	4.2067	0.0024412	2.7523	0.0015971	580.3040479313358	63.681	2.5997	60.937	60.374	62.973	-2.7444					149	49	6	0	0	0	0.16138	1	4834	4834		85.161	10.118	1	676090			28109	13826	23034	23061	31388	31388					0.01598401273554373
LCLVRPSL	8	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))LVRPSL_	LC(1)LVRPSL		LC(71)LVRPSL		0	1	0		ENST00000421462.5_1_2:159314085-159314565:+|nuORF	ENST00000421462.5_1_2:159314085-159314565:+|nuORF	ENST00000421462.5_1_2:159314085-159314565:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	479.2792663574219	2	479.281137	956.547722	-0.31076	-0.00014894	-3.1843	-0.0015262	-3.4951	-0.0016751	479.2797349881233	95.486	3.0134	94.457	93.134	96.147	-1.0281					131	60	4	0	0	0	0.56195	1	8607	8607		71.296	8.3173	1	2203400			28110	11683	23035	23062	31389	31389	125				0.06771008296391301
LCLVWNNSL	9	Unmodified	_LCLVWNNSL_					0	0	0		nc|ENSG00000112414|Q86SQ4-2|ADGRG6;nc|ENSG00000112414|Q86SQ4|ADGRG6;nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENSG00000112414|ENST00000367609|ADGRG6;ENST00000415128.6_1_6:142623466-142692070:+|nuORF	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.3076782226562	2	531.276052	1060.53755	-0.43358	-0.00023035	2.9242	0.0015535	2.4906	0.0013232	531.2774534548853	55.427	0.57477	55.427	55.107	55.682	0					29	13	3	0	0	0	0.027408	1	4520	4520		68.485	26.089	1	841750			28111	2904	23036	23063	31390	31390					0.00970400571168284
LCLWEQIETL	10	Unmodified	_LCLWEQIETL_					0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-MSMS	OvCa99_classI_Rep5	1	624.82666015625	2	624.320657	1246.62676	1.6032	0.0010009	1.5642	0.00097659	3.1675	0.0019775	624.3220171811765	133.49	0.78821	133.49	133.17	133.96	0					40	16	3	0	0	0	0.09252	1	15521	15521		115.49	0.63578	1	635790	+		28112	22589	23037	23064	31391	31391					0.013311907400293421
LCLYHYIL	8	Unmodified	_LCLYHYIL_					0	0	0			REV__ENST00000344442.9_2_4:113566021-113567542:+|nuORF	REV__ENST00000344442.9_2_4:113566021-113567542:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.8109741210938	2	519.278063	1036.54157	0.52065	0.00027036	2.0168	0.0010473	2.5375	0.0013177	519.2789091066904	110.37	1.7366	108.77	108.12	109.86	-1.6011					61	32	4	0	0	0	0.028476	1	10167	10167		43.626	4.6046	1	135390	+		28113	24679	23038	23065	31392	31392					0.0247649006487336
LCMGHRQN	8	Unmodified	_LCMGHRQN_					0	0	0			REV__nc|ENSG00000065243|Q16513-5|PKN2	REV__nc|ENSG00000065243|Q16513-5|PKN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.78173828125	2	479.720921	957.427289	1.6425	0.00078794	1.3563	0.00065066	2.9988	0.0014386	479.72209929715643	83.014	0.25544	83.014	82.949	83.204	0					6	5	2	0	0	0	0.028476	1	8639	8639		37.028	7.8789	1	71930	+		28114	16788	23039	23066	31393	31393					-0.05312722968858452
LCMVGNTLV	9	Unmodified	_LCMVGNTLV_					0	0	0		ENSG00000148734|ENST00000277942|NPFFR1	ENSG00000148734|ENST00000277942|NPFFR1	ENSG00000148734|ENST00000277942|NPFFR1	MULTI-MSMS	OvCa99_classI_Rep5	1	475.2466125488281	2	475.245906	948.477259	-0.74103	-0.00035217	-0.10921	-5.1901E-05	-0.85023	-0.00040407	475.2457450267043	49.91	0.91633	49.91	49.593	50.509	0					53	20	4	0	0	0	0.068524	1	3767	3767		108.09	6.8759	1	3676000			28115	5422	23040	23067	31394	31394					0.0009596691643309896
LCNIVPAQR	9	Unmodified	_LCNIVPAQR_					0	0	0		CON__ENSEMBL:ENSBTAP00000023055	CON__ENSEMBL:ENSBTAP00000023055	CON__ENSEMBL:ENSBTAP00000023055	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.7953186035156	2	507.281669	1012.54878	1.3568	0.00068827	-1.2098	-0.00061371	0.14697	7.4556E-05	507.2805513636086	115.16	0.22903	115.16	115.07	115.3	0					8	4	2	0	0	0	0.027462	1	13168	13168		31.955	11.958	1	23111		+	28116	605	23041	23068	31395	31395					0.04301222665287696
LCPCLVKGQLS	11	Unmodified	_LCPCLVKGQLS_					0	0	0			REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	MULTI-SECPEP	OvCa9_classI_Rep3	3	580.8309326171875	2	580.811944	1159.60934	-1.7446	-0.0010133	0.077444	4.498E-05	-1.6671	-0.00096829	580.8129000786721	76.05	1.448	73.679	73.267	74.715	-2.3715					37	27	3	0	0	0	0.025265	1	3894	3894		42.864	11.334	1	43900	+		28117	29108	23042	23069	31396	31396					0.035915719333615925
LCPCLVKGQLS	11	Unmodified	_LCPCLVKGQLS_					0	0	0			REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	580.811944	1159.60934	-0.17456	-0.00010139	6.3727	0.0037013	6.1981	0.0035999	580.815993758731	73.815	0.34768	73.815	73.52	73.868	0	0.068165	0.0034049	NaN	65.157	9	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141890	+		28118	29108	23042	23069							0.035915719333615925
LCPGQPGTLL	10	Unmodified	_LCPGQPGTLL_					0	0	0			REV__ENST00000482301.1_1_3:49714104-49717481:+|nuORF	REV__ENST00000482301.1_1_3:49714104-49717481:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.7674560546875	2	499.770603	997.526652	-0.65935	-0.00032952	-3.1299	-0.0015642	-3.7892	-0.0018937	499.76874646722524	104.67	0.92801	102.55	102.22	103.15	-2.1192					44	17	3	0	0	0	0.50999	1	9490	9490		52.937	3.4952	1	321940	+		28119	26499	23043	23070	31397	31397					0.02778998196890825
LCPNEMAVIP	10	Unmodified	_LCPNEMAVIP_					0	0	0			REV__ENSG00000142327|ENST00000270357|RNPEPL1	REV__ENSG00000142327|ENST00000270357|RNPEPL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.3018188476562	2	543.769745	1085.52494	0.74185	0.0004034	4.3096	0.0023434	5.0515	0.0027468	543.771599635179	85.027	0.77683	82.38	82.12	82.896	-2.6463					33	15	3	0	0	0	0.026635	1	7125	7125		39.253	0.44669	1	91613	+		28120	19782	23044	23071	31398	31398					-0.014403788833988074
LCPNEMAVIP	10	Unmodified	_LCPNEMAVIP_					0	0	0			REV__ENSG00000142327|ENST00000270357|RNPEPL1	REV__ENSG00000142327|ENST00000270357|RNPEPL1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	543.769745	1085.52494	-1.0155	-0.00055217	5.4835	0.0029818	4.468	0.0024296	543.7722737904751	83.8	0.82037	82.253	81.925	82.745	-1.5462	-0.063502	0.00051995	NaN	39.253	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69190	+		28121	19782	23044	23071							-0.014403788833988074
LCPQLAKR	8	Unmodified	_LCPQLAKR_					0	0	0			REV__ENST00000373242.6_1_10:71911919-71912228:-|nuORF	REV__ENST00000373242.6_1_10:71911919-71912228:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.7590637207031	2	464.77348	927.532406	0.010658	4.9535E-06	-3.9747	-0.0018473	-3.964	-0.0018424	464.77154826400294	52.883	1.5238	52.883	52.566	54.089	0					98	35	4	0	0	0	0.028476	1	4343	4343		62.978	17.026	1	10355000	+		28122	25033	23045	23072	31399	31399					0.06574141499208963
LCPRCTCPV	9	Unmodified	_LCPRCTCPV_					0	0	0		nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3	nc|ENSG00000170004|Q12873-2|CHD3	nc|ENSG00000170004|Q12873-2|CHD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.2565002441406	2	496.229733	990.444913	-1.3558	-0.00067278	-3.6143	-0.0017935	-4.9701	-0.0024663	496.22812702117915	44.004	0.21418	44.004	43.866	44.08	0					6	4	2	0	0	0	0.027462	1	2945	2945		34.173	18.531	1	101870			28123	7063	23046	23073	31400	31400					-0.0506914375823726
LCPRILLLP	9	Unmodified	_LCPRILLLP_					0	0	0			REV__Harlequin-int_dup372|chr10:84170027-84170994:-|2.0484706391337646|0.252139802420439|3.02|427.0|57|1|anti-sense	REV__Harlequin-int_dup372|chr10:84170027-84170994:-|2.0484706391337646|0.252139802420439|3.02|427.0|57|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.792236328125	2	519.33063	1036.64671	0.67811	0.00035216	-0.26287	-0.00013652	0.41524	0.00021565	519.3302973814731	86.642	0.93681	84.015	83.812	84.748	-2.6269					20	18	2	0	0	0	0.027462	1	7393	7393		31.955	1.4512	1	31816	+		28124	28185	23047	23074	31401	31401					0.12985031261291624
LCQLVWIYL	9	Unmodified	_LCQLVWIYL_					0	0	0			REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|236|3|anti-sense	REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|236|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	575.81982421875	2	575.820095	1149.62564	-1.4276	-0.00082203	3.3833	0.0019482	1.9557	0.0011261	575.8217900967206	101.92	1.8305	100.4	99.898	101.73	-1.5211					92	34	4	0	0	0	0.34496	1	6997	6997		57.811	4.4598	1	461040	+		28125	28384	23048	23075	31402	31402					0.05681021161785793
LCQLVWIYL	9	Unmodified	_LCQLVWIYL_					0	0	0			REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|236|3|anti-sense	REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|236|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8206787109375	2	575.820095	1149.62564	-0.53993	-0.0003109	2.4273	0.0013977	1.8873	0.0010868	575.8213366276692	102.55	1.3596	100.35	100.1	101.46	-2.1994					72	25	4	0	0	0	0.42057	1	9255	9255		50.025	7.6284	1	373490	+		28126	28384	23048	23075	31403	31403					0.05681021161785793
LCQPYRDSP	9	Unmodified	_LCQPYRDSP_					0	0	0			REV__ENST00000569319.5_1_16:70395351-70399888:+|nuORF	REV__ENST00000569319.5_1_16:70395351-70399888:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.8016357421875	2	539.752941	1077.49133	1.9056	0.0010285	-4.0415	-0.0021814	-2.1359	-0.0011529	539.7506552259765	117.45	0.47243	117.45	117.23	117.7	0					16	9	2	0	0	0	0.027403	1	13425	13425		90.37	16.115	1	119760	+		28127	21411	23049	23076	31404	31404					-0.04431664330923013
LCQVRPKR	8	Unmodified	_LCQVRPKR_					0	0	0			REV__nc|ENSG00000146414|Q149N8-4|SHPRH	REV__nc|ENSG00000146414|Q149N8-4|SHPRH	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.8257141113281	2	500.297653	998.580753	-1.1147	-0.00055767	-4.2224	-0.0021124	-5.337	-0.0026701	500.29554089546417	65.72	0.63251	65.72	65.426	66.059	0					41	15	4	0	0	0	0.028476	1	6076	6076		25.45	5.4534	1	1966400	+		28128	20017	23050	23077	31405	31405					0.08140635139113783
LCREMHQRR	9	Unmodified	_LCREMHQRR_					0	0	0			REV__MFN1|p.K336Ifs*24|1|0.12|ENSG00000171109|chr3:179375250-179375251|-/TTCTAATGAGGAAATTTTTTAACATTGAAAAT|frameshift_variant	REV__MFN1|p.K336Ifs*24|1|0.12|ENSG00000171109|chr3:179375250-179375251|-/TTCTAATGAGGAAATTTTTTAACATTGAAAAT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	614.3489990234375	2	614.811133	1227.60771	2.5577	0.0015725	4.3623	0.002682	6.92	0.0042545	614.813761728244	75.304	0.80231	75.304	74.761	75.563	0					35	19	4	0	0	0	0.027462	1	7439	7439		21.96	0	1	829660	+		28129	21593	23051	23078	31406	31406					0.0030137568796817504
LCRFESVL	8	Unmodified	_LCRFESVL_					0	0	0		ENSG00000112144|ENST00000676107|CILK1	ENSG00000112144|ENST00000676107|CILK1	ENSG00000112144|ENST00000676107|CILK1	MULTI-MSMS	OvCa9_classI_Rep3	3	483.7571716308594	2	483.757495	965.500437	-0.55005	-0.00026609	1.5607	0.00075502	1.0107	0.00048893	483.7581117979979	133.25	1.079	132.13	131.88	132.96	-1.1249					46	21	3	0	0	0	0.59148	1	10692	10692		65.803	0	1	117690			28130	2881	23052	23079	31407	31407					0.01630729025407618
LCRFESVL	8	Unmodified	_LCRFESVL_					0	0	0		ENSG00000112144|ENST00000676107|CILK1	ENSG00000112144|ENST00000676107|CILK1	ENSG00000112144|ENST00000676107|CILK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	483.75799560546875	2	483.757495	965.500437	3.3614	0.0016261	-2.501	-0.0012099	0.86034	0.0004162	483.7561891827334	133.64	1.3276	132.12	131.71	133.03	-1.5257					68	26	4	0	0	0	0.68714	1	12900	12900		45.952	5.3793	1	265510			28131	2881	23052	23079	31408	31408					0.01630729025407618
LCRFESVL	8	Unmodified	_LCRFESVL_					0	0	0		ENSG00000112144|ENST00000676107|CILK1	ENSG00000112144|ENST00000676107|CILK1	ENSG00000112144|ENST00000676107|CILK1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	483.757495	965.500437	0.28695	0.00013881	0.74664	0.00036119	1.0336	0.00050001	483.7577260156993	132.6	1.2336	132.37	131.98	133.21	-0.22697	0.16381	0.00015189	NaN	65.803	57	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135570			28132	2881	23052	23079							0.01630729025407618
LCRLHNVHT	9	Unmodified	_LCRLHNVHT_					0	0	0			REV__ENSG00000148341|ENST00000372564|SH3GLB2	REV__ENSG00000148341|ENST00000372564|SH3GLB2	MULTI-MSMS	OvCa99_classI_Rep5	1	546.7965698242188	2	546.790192	1091.56583	-1.2718	-0.00069542	-3.6041	-0.0019707	-4.8759	-0.0026661	546.7881137926465	69.987	1.2471	69.987	69.475	70.722	0					89	30	4	0	0	0	0.13482	1	6679	6679		87.754	5.5138	1	18649000	+		28133	20103	23053	23080	31409	31409					0.023711432711024827
LCRNIRDRRRK	11	Unmodified	_LCRNIRDRRRK_					0	0	0			REV__nc|ENSG00000187821|A6NFD8-4|HELT	REV__nc|ENSG00000187821|A6NFD8-4|HELT	MULTI-MSMS	OvCa9_classI_Rep2	2	495.9593811035156	3	495.960032	1484.85827	-4.8163	-0.0023887	2.0433	0.0010134	-2.773	-0.0013753	495.96094978154576	162.14	1.4092	161.91	160.94	162.35	-0.22696					77	27	3	0	0	0	0.72524	1	16499	16499		12.433	2.3289	1	83644	+		28134	22668	23054	23081	31410	31410					0.13523096004928448
LCRRPCVPD	9	Unmodified	_LCRRPCVPD_					0	0	0		ENST00000543196.6_1_12:51753021-51754538:-|nuORF	ENST00000543196.6_1_12:51753021-51754538:-|nuORF	ENST00000543196.6_1_12:51753021-51754538:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.7960815429688	2	529.765329	1057.5161	-0.8259	-0.00043753	3.3092	0.0017531	2.4833	0.0013156	529.7670971900566	97.795	1.0775	96.837	96.365	97.442	-0.95857					64	21	5	0	0	0	0.027462	1	8911	8911		38.806	8.3025	1	60782			28135	13490	23055	23082	31411	31411					-0.010353077292165835
LCRSFYIT	8	Unmodified	_LCRSFYIT_					0	0	0		CYP4F22|p.F349Lfs*21|1|0.04|ENSG00000171954|chr19:15544190-15544190|C/-|frameshift_variant;CYP4F22|p.M270Ffs*111|1|0.04|ENSG00000171954|chr19:15540585-15540586|-/TTTTTAAAAAATAATGGCTTTGTTGAGACACA|frameshift_variant;ENSG00000171954|ENST00000269703|CYP4F22	CYP4F22|p.F349Lfs*21|1|0.04|ENSG00000171954|chr19:15544190-15544190|C/-|frameshift_variant	CYP4F22|p.F349Lfs*21|1|0.04|ENSG00000171954|chr19:15544190-15544190|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	501.7656555175781	2	501.757495	1001.50044	-1.0857	-0.00054474	3.8763	0.001945	2.7907	0.0014002	501.75923326321686	36.729	0.44479	36.729	36.532	36.977	0					23	9	3	0	0	0	0.65062	1	1962	1962		53.351	0.41475	1	540630			28136	703	23056	23083	31412	31412					-0.00025270974606428354
LCRWEEKDP	9	Unmodified	_LCRWEEKDP_					0	0	0		ENSG00000119421|ENST00000373768|NDUFA8;NDUFA8|p.F43L|1|0.05|ENSG00000119421|chr9:122152333-122152333|A/G|missense_variant	ENSG00000119421|ENST00000373768|NDUFA8	ENSG00000119421|ENST00000373768|NDUFA8	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.2894287109375	2	588.279323	1174.54409	0.69821	0.00041074	3.1742	0.0018673	3.8724	0.002278	588.2800860265111	158.75	0.19023	158.75	158.65	158.84	0					5	3	2	0	0	0	0.027462	1	18609	18609		21.96	0	1	18165			28137	3363	23057	23084	31413	31413					-0.03619706268136724
LCSCLHSC	8	Unmodified	_LCSCLHSC_					0	0	0			REV__ENSG00000134013|ENST00000389131|LOXL2	REV__ENSG00000134013|ENST00000389131|LOXL2	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1715393066406	2	433.171884	864.329215	2.6506	0.0011482	-3.8381	-0.0016626	-1.1875	-0.00051439	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.73288	1	1985	1985		35.201	1.6851	1	60065	+		28138	19169	23058	23085	31414	31414					-0.1083766760908702
LCSFRTFGPA	10	Unmodified	_LCSFRTFGPA_					0	0	0			REV__ENST00000518472.1_2_8:23189434-23191051:-|nuORF	REV__ENST00000518472.1_2_8:23189434-23191051:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.2540283203125	2	549.773677	1097.5328	1.0353	0.00056919	-0.27993	-0.0001539	0.75538	0.00041529	549.7732909616839	145.29	0.49393	145.29	144.94	145.43	0					25	10	3	0	0	0	0.026523	1	16971	16971		68.787	15.85	1	192480	+		28139	27031	23059	23086	31415	31415					-0.012064835715818845
LCSFSCCLN	9	Unmodified	_LCSFSCCLN_					0	0	0		ENST00000366654.4_1_1:231155070-231155202:-|nuORF	ENST00000366654.4_1_1:231155070-231155202:-|nuORF	ENST00000366654.4_1_1:231155070-231155202:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.25042724609375	2	495.198099	988.381644	-0.049396	-2.4461E-05	2.94	0.0014559	2.8906	0.0014314	495.1991573017292	102.63	0.36859	100.43	100.25	100.62	-2.1994					15	6	4	0	0	0	0.027462	1	9232	9232		30.504	18.297	1	13690			28140	10826	23060	23087	31416	31416					-0.11301129266132648
LCSFSCCLN	9	Unmodified	_LCSFSCCLN_					0	0	0		ENST00000366654.4_1_1:231155070-231155202:-|nuORF	ENST00000366654.4_1_1:231155070-231155202:-|nuORF	ENST00000366654.4_1_1:231155070-231155202:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	495.198099	988.381644	-0.98478	-0.00048766	2.9727	0.0014721	1.9879	0.0009844	495.19936785994696	101.85	0.31625	100.32	100.21	100.53	-1.5211	-0.051352	2.0109E-05	NaN	30.504	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11134			28141	10826	23060	23087							-0.11301129266132648
LCSQNTYTL	9	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))SQNTYTL_	LC(1)SQNTYTL		LC(93)SQNTYTL		0	1	0		ENSG00000130338|ENST00000367097|TULP4	ENSG00000130338|ENST00000367097|TULP4	ENSG00000130338|ENST00000367097|TULP4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.3040161132812	2	550.258056	1098.50156	-0.36375	-0.00020016	1.7354	0.00095493	1.3717	0.00075477	550.259806081853	63.703	0.67373	60.228	60.012	60.686	-3.475					17	13	2	0	0	0	0.027353	1	4495	4495		93.195	21.318	1	81797			28142	3979	23061	23088	31417	31417	38				-0.04375101396340142
LCSVQGRPE	9	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))SVQGRPE_	LC(1)SVQGRPE		LC(69)SVQGRPE		0	1	0		ENSG00000101842|ENST00000217957|VSIG1;nc|ENSG00000101842|Q86XK7-2|VSIG1	ENSG00000101842|ENST00000217957|VSIG1	ENSG00000101842|ENST00000217957|VSIG1	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.2623291015625	2	523.258391	1044.50223	-0.1774	-9.2828E-05	0.27691	0.0001449	0.099511	5.207E-05	523.2582442682037	60.699	1.6607	57.269	56.749	58.41	-3.43					62	33	3	0	0	0	0.24951	1	4127	4127		68.787	7.8149	1	479790			28143	2202	23062	23089	31418	31418	18				-0.01824261956630835
LCTAPILS	8	Unmodified	_LCTAPILS_					0	0	0			REV__ENST00000492257.1_1_2:72406466-72490463:-|nuORF	REV__ENST00000492257.1_1_2:72406466-72490463:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.75067138671875	2	409.228039	816.441526	0.54828	0.00022437	3.1081	0.0012719	3.6564	0.0014963	409.2293537108256	33.834	0.2407	33.834	33.632	33.873	0					7	4	2	0	0	0	0.028476	1	1562	1562		40.573	10.731	1	47487	+		28144	26690	23063	23090	31419	31419					0.025962527310753103
LCTITLNVLTS	11	Unmodified	_LCTITLNVLTS_					0	0	0			REV__L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|199|1|anti-sense	REV__L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|199|1|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	589.3302612304688	2	589.328482	1176.64241	1.8646	0.0010989	-1.5336	-0.00090377	0.33108	0.00019511	589.3273639336933	77.67	0.79953	77.67	77.168	77.968	0					61	18	5	0	0	0	0.4646	1	7830	7830		56.434	6.9922	1	4425500	+		28145	28567	23064	23091	31420	31420					0.06115477257071689
LCTRIIDAITK	11	Unmodified	_LCTRIIDAITK_					0	0	0			REV__ENST00000368256.3_1_1:156302875-156308050:-|nuORF	REV__ENST00000368256.3_1_1:156302875-156308050:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	623.3145141601562	2	623.863023	1245.71149	-2.0413	-0.0012735	-1.8766	-0.0011708	-3.918	-0.0024443	623.8618473119682	103.79	0.50927	103.79	103.55	104.06	0					24	11	3	0	0	0	0.025418	1	11647	11647		32.751	4.669	1	409140	+		28146	15759	23065	23092	31421	31421					0.09846561276594912
LCTVMAKIP	9	Unmodified	_LCTVMAKIP_					0	0	0			REV__nc|ENSG00000112337|O00624-2|SLC17A2	REV__nc|ENSG00000112337|O00624-2|SLC17A2	MULTI-SECPEP	OvCa9_classI_Rep2	2	488.7588195800781	2	488.271924	974.529295	-0.74756	-0.00036501	2.3825	0.0011633	1.635	0.00079832	488.2728012271872	67.791	2.7254	65.13	64.149	66.874	-2.661					58	54	2	0	0	0	0.027462	1	5407	5407		34.173	0	1	87745	+		28147	18096	23066	23093	31422	31422					0.04101130330184333
LCVGGFIRGL	10	Unmodified	_LCVGGFIRGL_					0	0	0		ENSG00000151458|ENST00000504087|ANKRD50	ENSG00000151458|ENST00000504087|ANKRD50	ENSG00000151458|ENST00000504087|ANKRD50	MULTI-MSMS	OvCa9_classI_Rep3	3	517.7982788085938	2	517.794412	1033.57427	1.4247	0.00073772	4.1073	0.0021267	5.532	0.0028644	517.7964964999819	110.93	1.598	109.83	109.49	111.09	-1.1038					49	31	2	0	0	0	0.35697	1	8032	8032		73.975	4.3471	1	549860			28148	5552	23067	23094	31423	31423					0.05882697187735175
LCVLISKQA	9	Unmodified	_LCVLISKQA_					0	0	0		ENST00000435306.1_1_X:102942274-102942946:+|nuORF	ENST00000435306.1_1_X:102942274-102942946:+|nuORF	ENST00000435306.1_1_X:102942274-102942946:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	487.7912902832031	2	487.788795	973.563038	-0.81941	-0.0003997	2.8605	0.0013953	2.0411	0.00099561	487.79010480424614	132.71	4.2431	131.59	130.54	134.78	-1.1249					147	85	2	0	0	0	0.61208	1	10560	10560		30.504	4.9296	1	99955			28149	11857	23068	23095	31424	31424					0.0751987509358969
LCVLRSPL	8	Carbamidomethyl (C)	_LC(Carbamidomethyl (C))VLRSPL_	LC(1)VLRSPL		LC(89)VLRSPL		0	1	0			REV__ENST00000303436.10_1_3:57582936-57583008:-|nuORF	REV__ENST00000303436.10_1_3:57582936-57583008:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	479.2789001464844	2	479.281137	956.547722	-0.31076	-0.00014894	-3.1843	-0.0015262	-3.4951	-0.0016751	479.2797349881233	95.486	3.0134	94.457	93.134	96.147	-1.0281					131	60	4	0	0	0	0.39692	1	8601	8601		88.643	6.3378	1	2203400	+		28150	24271	23069	23096	31425	31425	289				0.06771008296391301
LCWVAPASL	9	Unmodified	_LCWVAPASL_					0	0	0			REV__GLIS3|p.T657Qfs*50|1|0.04|ENSG00000107249|chr9:3856048-3856048|T/-|frameshift_variant	REV__GLIS3|p.T657Qfs*50|1|0.04|ENSG00000107249|chr9:3856048-3856048|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.29205322265625	2	480.254588	958.494624	0.7888	0.00037883	-4.4193	-0.0021224	-3.6305	-0.0017435	480.25234002752836	110.57	1.1573	108.97	108.65	109.8	-1.6011					47	21	3	0	0	0	0.027462	1	10224	10224		26.796	0	1	51497	+		28151	28159	23070	23097	31426	31426					0.013716305137222662
LCYLQDCLQ	9	2 Carbamidomethyl (C)	_LC(Carbamidomethyl (C))YLQDC(Carbamidomethyl (C))LQ_	LC(1)YLQDC(1)LQ		LC(48)YLQDC(48)LQ		0	2	0		ENST00000434479.2_1_1:235596454-235596487:+|nuORF	ENST00000434479.2_1_1:235596454-235596487:+|nuORF	ENST00000434479.2_1_1:235596454-235596487:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	606.776611328125	2	606.773016	1211.53148	0.85223	0.00051711	4.4499	0.0027001	5.3021	0.0032172	606.7754588297506	159.93	1.8224	159.93	159.24	161.06	0					77	36	3	0	0	0	0.44568	1	18768	18768		47.657	6.2307	1	717280			28152	11844	23071	23098	31427	31427	129;130				-0.06582485722674392
LCYNHQSL	8	Unmodified	_LCYNHQSL_					0	0	0			REV__ENSG00000182263|ENST00000333129|FIGN	REV__ENSG00000182263|ENST00000333129|FIGN	MULTI-MSMS	OvCa9_classI_Rep3	3	489.23089599609375	2	489.229102	976.443651	0.015164	7.4185E-06	1.7788	0.00087026	1.794	0.00087768	489.229832467345	105.42	1.3539	104.07	103.73	105.08	-1.3482					49	25	3	0	0	0	0.74229	1	7406	7406		30.504	2.2494	1	218410	+		28153	22277	23072	23099	31428	31428					-0.045513185311165216
LDAGRMFLPNV	11	Unmodified	_LDAGRMFLPNV_					0	0	0		ENST00000546833.5_1_12:56391260-56391503:+|nuORF	ENST00000546833.5_1_12:56391260-56391503:+|nuORF	ENST00000546833.5_1_12:56391260-56391503:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	617.3311767578125	2	616.82644	1231.63833	2.6624	0.0016423	4.0891	0.0025223	6.7516	0.0041645	616.8290752110601	100.97	0.66777	100.97	100.73	101.4	0					37	15	3	0	0	0	0.025824	1	11197	11197		42.864	0	1	2758500			28154	13540	23073	23100	31429	31429					0.03177432554002735
LDAILRIP	8	Unmodified	_LDAILRIP_					0	0	0			REV__L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|137|3|sense	REV__L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|137|3|sense	MSMS	OvCa9_classI_Rep3	3	455.790283203125	2	455.789653	909.564752	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.33	1	106.06	105.56	106.56	-1.267								0	0	0	0.30129	1	7615	7615		85.359	8.5128	1		+		28155	28529	23074	23101	31430	31430					0.1063525217384722
LDAIPILYYII	11	Unmodified	_LDAIPILYYII_					0	0	0		ENSG00000180772|ENST00000371906|AGTR2	ENSG00000180772|ENST00000371906|AGTR2	ENSG00000180772|ENST00000371906|AGTR2	MULTI-MSMS	OvCa9_classI_Rep3	3	436.2615661621094	3	436.260085	1305.75843	1.694	0.00073904	1.39	0.0006064	3.084	0.0013454	436.26077678089143	64.483	2.8395	61.49	61.14	63.98	-2.9933					174	55	5	0	0	0	0.71831	1	2655	2655		23.378	2.3457	1	3808000			28156	7884	23075	23102	31431	31431					0.1177774409943595
LDAKEDAWI	9	Unmodified	_LDAKEDAWI_					0	0	0		tr|A0A553SGG2|A0A553SGG2_NIACISporegernimationproteinKCOS=NialliacirculansOX=1397GN=CEQ21_10810PE=3SV=1	tr|A0A553SGG2|A0A553SGG2_NIACISporegernimationproteinKCOS=NialliacirculansOX=1397GN=CEQ21_10810PE=3SV=1	tr|A0A553SGG2|A0A553SGG2_NIACISporegernimationproteinKCOS=NialliacirculansOX=1397GN=CEQ21_10810PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.767822265625	2	530.769114	1059.52368	-1.8559	-0.00098504	-1.6061	-0.00085245	-3.4619	-0.0018375	530.7681137567506	99.869	1.3316	97.544	97.16	98.491	-2.3253					64	25	4	0	0	0	0.40818	1	8916	8916		51.193	1.6567	1	305160			28157	33153	23076	23103	31432	31432					-0.0037055365630749293
LDAKSLCAAEL	11	Unmodified	_LDAKSLCAAEL_					0	0	0		BTRC|p.L271Ifs*16|1|0.16|ENSG00000166167|chr10:101531303-101531304|-/ATAGATGAATT|frameshift_variant;nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC	BTRC|p.L271Ifs*16|1|0.16|ENSG00000166167|chr10:101531303-101531304|-/ATAGATGAATT|frameshift_variant	BTRC|p.L271Ifs*16|1|0.16|ENSG00000166167|chr10:101531303-101531304|-/ATAGATGAATT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	567.2981567382812	2	567.297181	1132.57981	0.42871	0.0002432	0.22004	0.00012483	0.64875	0.00036803	567.2971466273868	129.51	1.1381	128.4	128.04	129.18	-1.1121					71	22	5	0	0	0	0.34475	1	10242	10242		65.157	3.0498	1	263930			28158	164	23077	23104	31433	31433					0.018823311888581884
LDANHKALYK	10	Unmodified	_LDANHKALYK_					0	0	0			REV__MTHFD1-CASK|2|fusion	REV__MTHFD1-CASK|2|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	586.8235473632812	2	586.824755	1171.63496	-5.6686	-0.0033265	3.6369	0.0021342	-2.0317	-0.0011922	586.8267226357335	149.07	1.5069	148.12	147.65	149.16	-0.9512					81	29	4	0	0	0	0.75313	1	12613	12613		24.519	2.5593	1	213470	+		28159	28684	23078	23105	31434	31434					0.05600505771644748
LDANQPVL	8	Unmodified	_LDANQPVL_					0	0	0		FBXO27|p.T214P|1|0.09|ENSG00000161243|chr19:39026938-39026938|T/G|missense_variant	FBXO27|p.T214P|1|0.09|ENSG00000161243|chr19:39026938-39026938|T/G|missense_variant	FBXO27|p.T214P|1|0.09|ENSG00000161243|chr19:39026938-39026938|T/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	435.2421875	2	435.239993	868.465432	-0.35563	-0.00015478	1.6601	0.00072253	1.3044	0.00056774	435.2402664734223	53.43	2.0267	50.222	49.349	51.376	-3.208					97	39	4	0	0	0	0.50674	1	3267	3267		76.847	2.8719	1	337520			28160	14327	23079	23106	31435	31435					0.025938094890989305
LDAREAEIL	9	Unmodified	_LDAREAEIL_					0	0	0			REV__tr|A0A553SN67|A0A553SN67_NIACIStageVsporulationproteinKOS=NialliacirculansOX=1397GN=spoVKPE=3SV=1	REV__tr|A0A553SN67|A0A553SN67_NIACIStageVsporulationproteinKOS=NialliacirculansOX=1397GN=spoVKPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	515.2830200195312	2	515.282389	1028.55022	0.94124	0.00048501	-1.1969	-0.00061674	-0.25566	-0.00013174	515.2818157223961	106.61	4.2629	105.34	104.28	108.54	-1.267					165	82	5	0	0	0	0.44568	1	7608	7608		47.657	6.8792	1	4317700	+		28161	30397	23080	23107	31436	31436					0.03709135235044414
LDASAVDEEP	10	Unmodified	_LDASAVDEEP_					0	0	0		ARHGEF18|p.C504Wfs*18|1|0.1|ENSG00000104880|chr19:7453686-7453687|-/GCATGAGCCACCATGCCACGCCCAGC|frameshift_variant;ARHGEF18|p.E529Kfs*25|1|0.05|ENSG00000104880|chr19:7456369-7456369|A/-|frameshift_variant;ARHGEF18|p.E555Dfs*22|1|0.14|ENSG00000104880|chr19:7458559-7458560|AG/-|frameshift_variant;ARHGEF18|p.C504Lfs*75|1|0.12|ENSG00000104880|chr19:7453685-7453686|-/TACA|frameshift_variant;nc|ENSG00000104880|Q6ZSZ5-6|ARHGEF18;nc|ENSG00000104880|Q6ZSZ5-5|ARHGEF18;ENSG00000104880|ENST00000668164|ARHGEF18	ARHGEF18|p.C504Wfs*18|1|0.1|ENSG00000104880|chr19:7453686-7453687|-/GCATGAGCCACCATGCCACGCCCAGC|frameshift_variant	ARHGEF18|p.C504Wfs*18|1|0.1|ENSG00000104880|chr19:7453686-7453687|-/GCATGAGCCACCATGCCACGCCCAGC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.2796630859375	2	523.237844	1044.46113	-0.31404	-0.00016432	3.4064	0.0017824	3.0924	0.001618	523.2390609085703	75.604	0.29996	73.75	73.638	73.938	-1.854					7	5	2	0	0	0	0.027021	1	6239	6239		21.96	1.013	1	8184.7			28162	111	23081	23108	31437	31437					-0.0593174451514642
LDASILNV	8	Unmodified	_LDASILNV_					0	0	0		ENST00000502947.1_1_4:3317897-3344786:+|nuORF;nc|ENSG00000159788|O14924-5|RGS12;nc|ENSG00000159788|O14924-4|RGS12;ENSG00000159788|ENST00000336727|RGS12	ENST00000502947.1_1_4:3317897-3344786:+|nuORF	ENST00000502947.1_1_4:3317897-3344786:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	421.75390625	2	422.742368	843.470183	-1.2735	-0.00053837	1.0227	0.00043232	-0.25086	-0.00010605	422.7427681478322	87.46	0.80361	84.833	84.549	85.353	-2.6269					22	15	2	0	0	0	0.028476	1	7400	7400		18.324	0	1	41464			28163	6028	23082	23109	31438	31438					0.04218693631867154
LDASLLQKQI	10	Unmodified	_LDASLLQKQI_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-MSMS	OvCa9_classI_Rep2	2	564.8280639648438	2	564.834788	1127.65502	-0.67675	-0.00038225	0.6916	0.00039064	0.014847	8.3861E-06	564.8346997579999	99.67	1.1901	98.839	98.567	99.757	-0.83051					56	23	5	0	0	0	0.13794	2	9095	9089;9095		104.01	5.4316	1	334020			28164	4146	23083	23110	31439;31440	31440					0.09630256711625407
LDATQHTL	8	Unmodified	_LDATQHTL_					0	0	0		ENST00000576628.1_1_17:7240053-7245794:+|nuORF;ENSG00000072818|ENST00000158762|ACAP1	ENST00000576628.1_1_17:7240053-7245794:+|nuORF	ENST00000576628.1_1_17:7240053-7245794:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	449.73529052734375	2	449.735074	897.455596	0.7456	0.00033532	-0.62258	-0.00028	0.12302	5.5328E-05	449.7346410562763	46.091	1.0082	46.091	45.754	46.762	0					50	22	4	0	0	0	0.24597	2	3224	3224;3248		116.9	14.081	1	2938200			28165	1481	23084	23111	31441;31442	31441					0.0027662148370382056
LDAVALALVAA	11	Unmodified	_LDAVALALVAA_					0	0	0		ENSG00000145217|ENST00000398516|SLC26A1	ENSG00000145217|ENST00000398516|SLC26A1	ENSG00000145217|ENST00000398516|SLC26A1	MULTI-MSMS	OvCa9_classI_Rep3	3	513.8143920898438	2	513.813325	1025.6121	-0.52087	-0.00026763	0.12081	6.2073E-05	-0.40006	-0.00020556	513.8133179520387	96.39	1.8725	94.561	93.78	95.652	-1.8286					114	36	4	0	0	0	0.062333	1	6331	6331		108.09	1.08	1	1310500			28166	5209	23085	23112	31443	31443					0.10031486654179389
LDAVNHGTT	9	Unmodified	_LDAVNHGTT_					0	0	0			REV__ENSG00000143621|ENST00000361891|ILF2	REV__ENSG00000143621|ENST00000361891|ILF2	MULTI-SECPEP	OvCa9_classI_Rep3	3	464.28314208984375	2	464.230156	926.445759	-0.97077	-0.00045066	0.5328	0.00024734	-0.43797	-0.00020332	464.2303003203418	96.341	0.96756	94.513	94.172	95.14	-1.8286					24	18	2	0	0	0	0.027402	1	6302	6302		66.429	14.13	1	35028	+		28167	19857	23086	23113	31444	31444					-0.02040566521668552
LDAYVFGF	8	Unmodified	_LDAYVFGF_					0	0	0		nc|ENSG00000177034|Q5HYI7-4|MTX3;nc|ENSG00000177034|Q5HYI7-5|MTX3;ENSG00000177034|ENST00000512528|MTX3	nc|ENSG00000177034|Q5HYI7-4|MTX3	nc|ENSG00000177034|Q5HYI7-4|MTX3	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.7444763183594	2	466.231636	930.448719	-0.69758	-0.00032523	2.4317	0.0011337	1.7341	0.00080849	466.2322168364882	43.518	0.72345	43.518	43.1	43.823	0					33	16	3	0	0	0	0.028476	1	2857	2857		20.482	0	1	51873			28168	7650	23087	23114	31445	31445					-0.01928691396847171
LDCGLCFASPG	11	Unmodified	_LDCGLCFASPG_					0	0	0		ENST00000426871.1_1_1:151262664-151263682:+|nuORF;ENSG00000143373|ENST00000336715|ZNF687	ENST00000426871.1_1_1:151262664-151263682:+|nuORF	ENST00000426871.1_1_1:151262664-151263682:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	541.7359619140625	2	541.735902	1081.45725	0.70515	0.00038201	-0.63806	-0.00034566	0.067092	3.6346E-05	541.7353203825772	140.42	0.71539	140.42	140.22	140.93	0					27	14	3	0	0	0	0.64273	1	16416	16416		40.778	0	1	65575			28169	5043	23088	23115	31446	31446					-0.08021828814185028
LDCGVGERYLL	11	Carbamidomethyl (C)	_LDC(Carbamidomethyl (C))GVGERYLL_	LDC(1)GVGERYLL		LDC(85)GVGERYLL		0	1	0			REV__ENSG00000185271|ENST00000636854|KLHL33	REV__ENSG00000185271|ENST00000636854|KLHL33	MULTI-MSMS	OvCa9_classI_Rep4_	4	432.22296142578125	3	432.220184	1293.63872	0.80495	0.00034791	3.5518	0.0015352	4.3568	0.0018831	432.2216930877392	63.939	2.4217	60.464	60.109	62.531	-3.475					134	49	5	0	0	0	0.16394	1	4516	4516		84.817	19.66	1	2524200	+		28170	22491	23089	23116	31447	31447	260				0.003648074831971826
LDCLHLAL	8	Unmodified	_LDCLHLAL_					0	0	0			REV__nc|ENSG00000110080|Q11206-7|ST3GAL4	REV__nc|ENSG00000110080|Q11206-7|ST3GAL4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	448.7881164550781	2	449.246763	896.478974	0.41526	0.00018656	2.8704	0.0012895	3.2857	0.0014761	449.24795129411484	47.163	0.90967	44.091	43.81	44.72	-3.0724					26	17	2	0	0	0	0.028476	1	2566	2566		33.516	0	1	59751	+		28171	17971	23090	23117	31448	31448					0.026593439966859478
LDCLINIV	8	Unmodified	_LDCLINIV_					0	0	0			REV__ADAMTSL3|p.R1207M|1|0.65|ENSG00000156218|chr15:83983248-83983248|G/T|missense_variant	REV__ADAMTSL3|p.R1207M|1|0.65|ENSG00000156218|chr15:83983248-83983248|G/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	451.7562255859375	2	451.754421	901.494289	0.30458	0.00013759	3.9357	0.0017779	4.2402	0.0019155	451.75610653537314	60.838	0.73061	60.838	60.559	61.289	0					33	16	3	0	0	0	0.50674	1	5336	5336		76.847	2.8719	1	1684300	+		28172	15567	23091	23118	31449	31449					0.0396021079387765
LDCLINIV	8	Unmodified	_LDCLINIV_					0	0	0			REV__ADAMTSL3|p.R1207M|1|0.65|ENSG00000156218|chr15:83983248-83983248|G/T|missense_variant	REV__ADAMTSL3|p.R1207M|1|0.65|ENSG00000156218|chr15:83983248-83983248|G/T|missense_variant	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	451.754421	901.494289	0.30458	0.00013759	3.9357	0.0017779	4.2402	0.0019155	451.75610653537314	60.838	0.73061	60.838	60.559	61.289	0	0	0	NaN	76.847	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1684300	+		28173	15567	23091	23118							0.0396021079387765
LDCMVNYLEI	10	Unmodified	_LDCMVNYLEI_					0	0	0			REV__ENSG00000136960|ENST00000075322|ENPP2	REV__ENSG00000136960|ENST00000075322|ENPP2	MULTI-SECPEP	OvCa9_classI_Rep3	3	606.8333740234375	2	606.785592	1211.55663	1.1949	0.00072502	4.047	0.0024556	5.2418	0.0031807	607.2895431195909	88.268	0.20491	86.137	86.009	86.214	-2.1309					5	3	2	0	0	0	0.027632	1	5340	5340		67.494	0	1	17892	+		28174	19427	23092	23119	31450	31450					-0.04068430920096944
LDCRMALV	8	Oxidation (M)	_LDCRM(Oxidation (M))ALV_		LDCRM(1)ALV		LDCRM(63)ALV	0	0	1			REV__ENST00000557156.1_1_12:56745011-56748252:-|nuORF	REV__ENST00000557156.1_1_12:56745011-56748252:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	468.7347106933594	2	468.735706	935.456858	-0.76934	-0.00036062	-2.1378	-0.0010021	-2.9072	-0.0013627	468.7345404549694	118.42	0.99333	117.08	116.84	117.83	-1.3444					36	18	3	0	0	0	0.60331	1	11087	11087		63.306	6.5852	1	107700	+		28175	27570	23093	23120	31451	31451		612			-0.01345203743392176
LDCRMALV	8	Oxidation (M)	_LDCRM(Oxidation (M))ALV_					0	0	1			REV__ENST00000557156.1_1_12:56745011-56748252:-|nuORF	REV__ENST00000557156.1_1_12:56745011-56748252:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	468.735706	935.456858	2.0619	0.00096648	-3.3357	-0.0015636	-1.2739	-0.0005971	468.7343781811227	117.61	0.33161	117.61	117.41	117.74	0	0.36076	-0.0010704	NaN	63.306	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44670	+		28176	27570	23093	23120				612			-0.01345203743392176
LDCRMALV	8	Oxidation (M)	_LDCRM(Oxidation (M))ALV_					0	0	1			REV__ENST00000557156.1_1_12:56745011-56748252:-|nuORF	REV__ENST00000557156.1_1_12:56745011-56748252:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	468.735706	935.456858	-1.2279	-0.00057558	-1.6952	-0.0007946	-2.9231	-0.0013702	468.73475632282714	117.39	1.0906	117.26	116.86	117.96	-0.12869	0.0042939	0.0004676	NaN	63.306	35	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47369	+		28177	27570	23093	23120				612			-0.01345203743392176
LDCRMALV	8	Oxidation (M)	_LDCRM(Oxidation (M))ALV_					0	0	1			REV__ENST00000557156.1_1_12:56745011-56748252:-|nuORF	REV__ENST00000557156.1_1_12:56745011-56748252:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	468.735706	935.456858	-0.14993	-7.0278E-05	-2.4903	-0.0011673	-2.6402	-0.0012376	468.73434954453967	118.1	0.94173	117.06	116.74	117.68	-1.0324	-0.18823	-0.00027779	NaN	63.306	43	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92339	+		28178	27570	23093	23120				612			-0.01345203743392176
LDCRMALV	8	Oxidation (M)	_LDCRM(Oxidation (M))ALV_					0	0	1			REV__ENST00000557156.1_1_12:56745011-56748252:-|nuORF	REV__ENST00000557156.1_1_12:56745011-56748252:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	468.735706	935.456858	-0.76934	-0.00036062	-2.1378	-0.0010021	-2.9072	-0.0013627	468.7345404549694	118.42	0.99333	117.08	116.84	117.83	-1.3444	-0.17682	5.2623E-05	NaN	63.306	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107700	+		28179	27570	23093	23120				612			-0.01345203743392176
LDCVDCQFPK	10	Unmodified	_LDCVDCQFPK_					0	0	0			REV__ENST00000505484.5_1_4:121616268-121652778:-|nuORF	REV__ENST00000505484.5_1_4:121616268-121652778:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.8240966796875	2	584.262284	1166.51002	-2.4676	-0.0014417	1.5513	0.00090639	-0.91631	-0.00053536	584.2631748211674	104.27	0.25742	104.27	104.11	104.36	0					8	5	2	0	0	0	0.02663	1	11683	11683		42.864	7.246	1	119600	+		28180	19565	23094	23121	31452	31452					-0.06657870751382688
LDCVDCQFPK	10	Unmodified	_LDCVDCQFPK_					0	0	0			REV__ENST00000505484.5_1_4:121616268-121652778:-|nuORF	REV__ENST00000505484.5_1_4:121616268-121652778:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	584.262284	1166.51002	-0.72194	-0.0004218	1.1609	0.00067824	0.43892	0.00025644	584.2629166225578	104.55	0.74273	103.98	103.62	104.36	-0.57639	-0.031198	-0.00037317	NaN	42.864	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24595	+		28181	19565	23094	23121							-0.06657870751382688
LDCVDCQFPK	10	Unmodified	_LDCVDCQFPK_					0	0	0			REV__ENST00000505484.5_1_4:121616268-121652778:-|nuORF	REV__ENST00000505484.5_1_4:121616268-121652778:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	584.262284	1166.51002	-0.88646	-0.00051792	1.2846	0.00075056	0.39818	0.00023264	584.2629340017799	105.24	0.72759	103.89	103.73	104.46	-1.3482	-0.11477	-0.00022853	NaN	42.864	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34470	+		28182	19565	23094	23121							-0.06657870751382688
LDCVDCQFPK	10	Unmodified	_LDCVDCQFPK_					0	0	0			REV__ENST00000505484.5_1_4:121616268-121652778:-|nuORF	REV__ENST00000505484.5_1_4:121616268-121652778:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	584.262284	1166.51002	-1.0218	-0.000597	2.2729	0.0013279	1.2511	0.00073095	584.2636491289073	105.91	0.61215	103.89	103.7	104.31	-2.0161	-0.11849	0.00092624	NaN	42.864	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44612	+		28183	19565	23094	23121							-0.06657870751382688
LDDDVPLILTL	11	Unmodified	_LDDDVPLILTL_					0	0	0		ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1;TPCN1|p.L334Ffs*42|1|0.26|ENSG00000186815|chr12:113276977-113276978|-/TGAGACAGAGACTTGCTCTGTTGCCCAGGCTGTA|frameshift_variant;TPCN1|p.A407Vfs*15|1|0.26|ENSG00000186815|chr12:113278223-113278224|-/T|frameshift_variant;ENST00000552077.5_1_12:113664633-113726187:+|nuORF	ENSG00000186815|ENST00000335509|TPCN1	ENSG00000186815|ENST00000335509|TPCN1	MULTI-MSMS	OvCa9_classI_Rep2	2	409.5653381347656	3	409.567466	1225.68057	0.26604	0.00010896	-2.3112	-0.0009466	-2.0452	-0.00083764	409.5665107141036	60.403	1.4723	57.633	57.032	58.504	-2.7702					87	27	4	0	0	0	0.63942	1	4445	4445		41.08	1.0219	1	535930			28184	8364	23095	23122	31453	31453					0.07675686443394625
LDDFFVGGR	9	Unmodified	_LDDFFVGGR_					0	0	0			REV__tr|A0A7D7A165|A0A7D7A165_9CLOTRNaseadapterRapZOS=ClostridiumintestinaleOX=36845GN=rapZPE=3SV=1	REV__tr|A0A7D7A165|A0A7D7A165_9CLOTRNaseadapterRapZOS=ClostridiumintestinaleOX=36845GN=rapZPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.7717895507812	2	513.256174	1024.49779	-0.78737	-0.00040412	-3.571	-0.0018328	-4.3583	-0.0022369	513.2541685481608	50.518	0.44174	50.518	50.288	50.73	0					21	9	3	0	0	0	0.027462	1	3830	3830		15.642	0	1	523890	+		28185	32474	23096	23123	31454	31454					-0.013474031079113047
LDDFFVGGR	9	Unmodified	_LDDFFVGGR_					0	0	0			REV__tr|A0A7D7A165|A0A7D7A165_9CLOTRNaseadapterRapZOS=ClostridiumintestinaleOX=36845GN=rapZPE=3SV=1	REV__tr|A0A7D7A165|A0A7D7A165_9CLOTRNaseadapterRapZOS=ClostridiumintestinaleOX=36845GN=rapZPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	513.256174	1024.49779	-1.0706	-0.0005495	-2.5973	-0.0013331	-3.6679	-0.0018826	513.7575384844286	53.539	0.14825	50.725	50.628	50.776	-2.8139	0.10354	0.00094232	NaN	21.96	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3406.9	+		28186	32474	23096	23123							-0.013474031079113047
LDDFSFHLE	9	Unmodified	_LDDFSFHLE_					0	0	0			REV__ENST00000377403.6_1_1:9325871-9326042:+|nuORF	REV__ENST00000377403.6_1_1:9325871-9326042:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	561.7581176757812	2	561.758746	1121.50294	1.0872	0.00061075	-1.5864	-0.00089116	-0.49917	-0.00028041	561.757717613742	63.682	3.3714	60.689	60	63.371	-2.9933					120	66	3	0	0	0	0.53957	1	2448	2448		38.806	0.99462	1	89773	+		28187	25120	23097	23124	31455	31455					-0.052951440359720436
LDDGKRLLI	9	Unmodified	_LDDGKRLLI_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-8|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-2|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	OvCa9_classI_Rep3	3	521.8145751953125	2	521.816399	1041.61824	1.2388	0.00064644	-1.0859	-0.00056666	0.15289	7.9782E-05	521.8156556672232	111.31	1.926	110.21	109.9	111.83	-1.1038					90	38	4	0	0	0	0.22621	1	8093	8093		71.877	2.2498	1	431530			28188	4036	23098	23125	31456	31456					0.09910004885705348
LDDKRLYLL	9	Unmodified	_LDDKRLYLL_					0	0	0			REV__ENST00000457079.1_1_3:195869639-195869705:+|nuORF	REV__ENST00000457079.1_1_3:195869639-195869705:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	574.8375244140625	2	574.837331	1147.66011	-1.4106	-0.00081085	0.80962	0.0004654	-0.60095	-0.00034545	574.8376960382861	90.862	4.6623	88.781	88.464	93.126	-2.0805					220	93	6	0	0	0	0.21231	1	5662	5662		74.255	0	1	4849000	+		28189	26039	23099	23126	31457	31457					0.09218560574208823
LDDLLLLLQR	10	Unmodified	_LDDLLLLLQR_					0	0	0		ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1;ENST00000595897.5_1_19:42407837-42410617:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.37060546875	2	606.371538	1210.72852	-2.0217	-0.0012259	-1.2081	-0.00073258	-3.2298	-0.0019585	606.3706888805716	149.57	2.6994	148.14	147.52	150.22	-1.4344					165	58	4	0	0	0	0.83261	1	14916	14916		14.865	1.4108	1	304910			28190	1560	23100	23127	31458	31458					0.13158805154080255
LDDLTVNDN	9	Unmodified	_LDDLTVNDN_					0	0	0			REV__ENST00000400979.2_1_1:166244929-166246012:-|nuORF	REV__ENST00000400979.2_1_1:166244929-166246012:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.8005676269531	2	509.738011	1017.46147	0.41456	0.00021132	-1.0275	-0.00052377	-0.61297	-0.00031246	509.7374243905636	114.1	0.61122	112.65	112.38	112.99	-1.4461					27	11	3	0	0	0	0.027433	1	10559	10559		37.812	0	1	81226	+		28191	25406	23101	23128	31459	31459					-0.04656324795280398
LDDQLVQPE	9	Unmodified	_LDDQLVQPE_					0	0	0			REV__ENST00000477533.5_1_1:155023817-155026448:+|nuORF	REV__ENST00000477533.5_1_1:155023817-155026448:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7485961914062	2	528.764029	1055.5135	-0.29969	-0.00015846	0.079912	4.2255E-05	-0.21978	-0.00011621	528.7638149122968	61.114	0.88776	61.114	60.816	61.704	0					30	20	3	0	0	0	0.027418	1	5338	5338		52.937	0	1	543040	+		28192	19849	23102	23129	31460	31460					-0.012031613815224773
LDDRAQVL	8	Unmodified	_LDDRAQVL_					0	0	0			REV__sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1	REV__sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	465.25689697265625	2	465.256174	928.497795	-0.040842	-1.9002E-05	0.25347	0.00011793	0.21262	9.8925E-05	465.2561363322207	62.07	0.87719	62.07	61.784	62.661	0					50	20	4	0	0	0	0.32444	1	5501	5501		102.77	5.3007	1	1840400	+		28193	29417	23103	23130	31461	31461					0.03068596892092046
LDDRAQVL	8	Unmodified	_LDDRAQVL_					0	0	0			REV__sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1	REV__sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	465.256174	928.497795	-0.040842	-1.9002E-05	0.25347	0.00011793	0.21262	9.8925E-05	465.2561363322207	62.07	0.87719	62.07	61.784	62.661	0	0	0	NaN	102.77	50	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1840400	+		28194	29417	23103	23130							0.03068596892092046
LDDRPDEVD	9	Unmodified	_LDDRPDEVD_					0	0	0			REV__sp|P16766|UL35_HCMVAProteinUL35OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL35PE=1SV=1	REV__sp|P16766|UL35_HCMVAProteinUL35OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL35PE=1SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.2459716796875	2	537.240918	1072.46728	-0.41126	-0.00022095	0.00084236	4.5255E-07	-0.41042	-0.00022049	537.240989151594	115.17	1.1692	113.77	113.15	114.32	-1.3977					58	22	4	0	0	0	0.027432	1	10707	10707		33.922	11.342	1	148460	+		28195	29405	23104	23131	31462	31462					-0.06605226283613774
LDDSVQHT	8	Unmodified	_LDDSVQHT_					0	0	0			REV__nc|ENSG00000170011|Q8NFW9-4|MYRIP	REV__nc|ENSG00000170011|Q8NFW9-4|MYRIP	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.2628173828125	2	457.714339	913.414125	0.11071	5.0674E-05	-0.11943	-5.4665E-05	-0.0087187	-3.9907E-06	457.71417172871287	56.93	0.4354	56.93	56.702	57.138	0					14	9	2	0	0	0	0.028476	1	4748	4748		47.916	25.956	1	295750	+		28196	21508	23105	23132	31463	31463					-0.04604559275617248
LDDVDPLYVN	10	Unmodified	_LDDVDPLYVN_					0	0	0			REV__tr|A0A7D6VUJ1|A0A7D6VUJ1_9CLOTUvrABCsystemproteinCOS=ClostridiumintestinaleOX=36845GN=uvrCPE=3SV=1	REV__tr|A0A7D6VUJ1|A0A7D6VUJ1_9CLOTUvrABCsystemproteinCOS=ClostridiumintestinaleOX=36845GN=uvrCPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	581.789306640625	2	581.784961	1161.55537	0.8625	0.00050179	4.2649	0.0024813	5.1274	0.002983	581.7873873628653	143.41	0.74179	143.41	143.02	143.76	0					23	14	2	0	0	0	0.42962	1	16760	16760		64.207	2.0999	1	224700	+		28197	31682	23106	23133	31464	31464					-0.01894605692996265
LDDVDPLYVN	10	Unmodified	_LDDVDPLYVN_					0	0	0			REV__tr|A0A7D6VUJ1|A0A7D6VUJ1_9CLOTUvrABCsystemproteinCOS=ClostridiumintestinaleOX=36845GN=uvrCPE=3SV=1	REV__tr|A0A7D6VUJ1|A0A7D6VUJ1_9CLOTUvrABCsystemproteinCOS=ClostridiumintestinaleOX=36845GN=uvrCPE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	581.784961	1161.55537	0.8625	0.00050179	4.2649	0.0024813	5.1274	0.002983	581.7873873628653	143.41	0.74179	143.41	143.02	143.76	0	0	0	NaN	64.207	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224700	+		28198	31682	23106	23133							-0.01894605692996265
LDEAPLRGR	9	Unmodified	_LDEAPLRGR_					0	0	0		ENST00000233630.10_1_2:74735142-74735247:-|nuORF	ENST00000233630.10_1_2:74735142-74735247:-|nuORF	ENST00000233630.10_1_2:74735142-74735247:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.7717895507812	2	513.788173	1025.56179	-0.90028	-0.00046255	0.18198	9.3497E-05	-0.7183	-0.00036906	513.7881582298656	50.224	0.52153	50.224	49.944	50.465	0					22	11	3	0	0	0	0.027462	1	3830	3830		15.642	0	1	666400			28199	9731	23107	23134	31465	31465					0.05003377049024493
LDEFLLPA	8	Unmodified	_LDEFLLPA_					0	0	0		nc|ENSG00000148384|Q9NRR6-2|INPP5E;ENSG00000148384|ENST00000371712|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.28387451171875	2	459.252569	916.490584	-0.5625	-0.00025833	-0.53963	-0.00024783	-1.1021	-0.00050616	459.2526280445237	51.682	1.5622	48.509	47.516	49.078	-3.1734					37	30	2	0	0	0	0.028476	1	3017	3017		14.664	0	1	74135			28200	5407	23108	23135	31466	31466					0.0289986429165765
LDEFRKLVR	9	Unmodified	_LDEFRKLVR_					0	0	0		MACF1-CMTM4|1|fusion;MACF1-CMTM4|2|fusion;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1	MACF1-CMTM4|1|fusion;nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.3234252929688	2	588.348397	1174.68224	1.9618	0.0011542	0.23026	0.00013547	2.192	0.0012897	588.3483516902427	85.542	0.66174	85.542	85.292	85.954	0					42	15	4	0	0	0	0.027462	1	9005	9005		26.693	0	1	4076500			28201	15005;14812	23109	23136	31467	31467					0.10188785042646487
LDEGIRYR	8	Unmodified	_LDEGIRYR_					0	0	0		nc|ENSG00000142910|Q9GZM7-3|TINAGL1;ENSG00000142910|ENST00000271064|TINAGL1	nc|ENSG00000142910|Q9GZM7-3|TINAGL1	nc|ENSG00000142910|Q9GZM7-3|TINAGL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.2945251464844	2	511.274898	1020.53524	-0.57053	-0.0002917	0.41946	0.00021446	-0.15107	-7.724E-05	511.27419067589693	70.39	0.43478	70.39	70.13	70.565	0					13	10	2	0	0	0	0.028476	1	6748	6748		19.36	7.1531	1	213360			28202	5000	23110	23137	31468	31468					0.0257968815770937
LDEHNPPLK	9	Unmodified	_LDEHNPPLK_					0	0	0			REV__ENSG00000163751|ENST00000296046|CPA3	REV__ENSG00000163751|ENST00000296046|CPA3	MULTI-MSMS	OvCa9_classI_Rep2	2	531.7822265625	2	531.782556	1061.55056	-1.5399	-0.00081889	1.1515	0.00061235	-0.38839	-0.00020654	531.7830281716216	47.648	1.6888	44.939	44.39	46.079	-2.7097					102	33	5	0	0	0	0.18193	1	2913	2913		79.451	7.5735	1	612800	+		28203	20883	23111	23138	31469	31469					0.022245549548870258
LDEHVQRV	8	Unmodified	_LDEHVQRV_					0	0	0		ENST00000461023.5_1_16:343426-396314:-|nuORF;nc|ENSG00000103126|O15169-2|AXIN1;ENSG00000103126|ENST00000262320|AXIN1	ENST00000461023.5_1_16:343426-396314:-|nuORF	ENST00000461023.5_1_16:343426-396314:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	498.2676696777344	2	498.267073	994.519593	-0.55552	-0.0002768	0.090116	4.4902E-05	-0.4654	-0.0002319	498.26695765666864	55.421	0.78194	55.421	55.15	55.932	0					35	18	3	0	0	0	0.34187	1	4530	4530		99.375	32.946	1	1870300			28204	2283	23112	23139	31470	31470					0.02211401640670374
LDEILSRIA	9	Unmodified	_LDEILSRIA_					0	0	0		nc|ENSG00000119397|Q7Z7A1-2|CNTRL;nc|ENSG00000119397|Q7Z7A1-5|CNTRL;ENSG00000119397|ENST00000373855|CNTRL;ENST00000373851.6_1_9:123874787-123912836:+|nuORF	nc|ENSG00000119397|Q7Z7A1-2|CNTRL	nc|ENSG00000119397|Q7Z7A1-2|CNTRL	MULTI-MSMS	OvCa9_classI_Rep2	2	515.2992553710938	2	515.300581	1028.58661	-0.71327	-0.00036755	1.3484	0.00069485	0.63517	0.0003273	515.3010385104841	103.22	1.4324	102.53	102.23	103.66	-0.68459					89	28	4	0	0	0	0.24951	1	9527	9527		68.787	7.8149	1	289490			28205	3358	23113	23140	31471	31471					0.07346012131779389
LDEIRLLYA	9	Unmodified	_LDEIRLLYA_					0	0	0			REV__ENST00000562413.2_1_6:147124063-147124576:-|nuORF	REV__ENST00000562413.2_1_6:147124063-147124576:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.3153076171875	2	553.316232	1104.61791	0.65241	0.00036099	-1.5832	-0.00087603	-0.93083	-0.00051504	553.3154482722001	111.27	0.94742	109.76	109.42	110.37	-1.5111					31	17	2	0	0	0	0.21395	1	10259	10259		73.975	2.5968	1	102360	+		28206	19177	23114	23141	31472	31472					0.06978585165870754
LDEIRLLYA	9	Unmodified	_LDEIRLLYA_					0	0	0			REV__ENST00000562413.2_1_6:147124063-147124576:-|nuORF	REV__ENST00000562413.2_1_6:147124063-147124576:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	553.316232	1104.61791	0.84261	0.00046623	-1.7134	-0.00094807	-0.87083	-0.00048185	553.315412678634	109.92	0.89065	109.75	109.46	110.35	-0.17236	0.047784	-0.00050343	NaN	73.975	46	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66423	+		28207	19177	23114	23141							0.06978585165870754
LDEIRLLYA	9	Unmodified	_LDEIRLLYA_					0	0	0			REV__ENST00000562413.2_1_6:147124063-147124576:-|nuORF	REV__ENST00000562413.2_1_6:147124063-147124576:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	553.316232	1104.61791	0.24215	0.00013398	-0.97122	-0.00053739	-0.72907	-0.00040341	553.3155927571255	110.73	0.81332	109.58	109.35	110.16	-1.1444	-0.11335	0.00031793	NaN	73.975	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83129	+		28208	19177	23114	23141							0.06978585165870754
LDEIRLLYA	9	Unmodified	_LDEIRLLYA_					0	0	0			REV__ENST00000562413.2_1_6:147124063-147124576:-|nuORF	REV__ENST00000562413.2_1_6:147124063-147124576:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	553.316232	1104.61791	0.65241	0.00036099	-1.5832	-0.00087603	-0.93083	-0.00051504	553.3154482722001	111.27	0.94742	109.76	109.42	110.37	-1.5111	0.065568	-0.00035934	NaN	73.975	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102360	+		28209	19177	23114	23141							0.06978585165870754
LDEKISPLSV	10	Unmodified	_LDEKISPLSV_					0	0	0		nc|ENSG00000156467|P14927-2|UQCRB	nc|ENSG00000156467|P14927-2|UQCRB	nc|ENSG00000156467|P14927-2|UQCRB	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.8163452148438	2	550.813522	1099.61249	-2.1422	-0.00118	0.87934	0.00048435	-1.2629	-0.00069562	550.813949243727	107.78	1.8325	105.9	105.64	107.47	-1.8785					70	36	4	0	0	0	0.59317	1	9876	9876		42.864	2.0861	1	230570			28210	15114	23115	23142	31473	31473					0.06666861583380523
LDEKRQII	8	Unmodified	_LDEKRQII_					0	0	0		ENSG00000165091|ENST00000297784|TMC1	ENSG00000165091|ENST00000297784|TMC1	ENSG00000165091|ENST00000297784|TMC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.8326110839844	2	507.800749	1013.58694	2.4928	0.0012659	-0.35716	-0.00018137	2.1357	0.0010845	507.8010157398315	86.241	0.80844	86.241	85.912	86.72	0					32	19	3	0	0	0	0.028476	1	9150	9150		111.65	18.453	1	1297800			28211	6517	23116	23143	31474	31474					0.0806943185162936
LDEKTQCN	8	Carbamidomethyl (C)	_LDEKTQC(Carbamidomethyl (C))N_	LDEKTQC(1)N		LDEKTQC(85)N		0	1	0		nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;DNAH10|p.N3904Vfs*37|1|0.07|ENSG00000197653|chr12:123926777-123926778|-/GGTACAGAGAAGTCCCTGCC|frameshift_variant	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	504.2797546386719	2	504.226756	1006.43896	-1.5371	-0.00077507	3.7412	0.0018864	2.204	0.0011113	504.22852391474487	50.799	0.20452	47.626	47.516	47.721	-3.1734					5	3	2	0	0	0	0.028476	1	2953	2953		85.359	18.93	1	5448.2			28212	8733	23117	23144	31475	31475	87				-0.06400247464534914
LDELDSFPR	9	Unmodified	_LDELDSFPR_					0	0	0			REV__ENSG00000183463|ENST00000332715|URAD	REV__ENSG00000183463|ENST00000332715|URAD	MULTI-SECPEP	OvCa9_classI_Rep2	2	546.8097534179688	2	546.272021	1090.52949	-0.14774	-8.0706E-05	0.88483	0.00048336	0.73709	0.00040265	546.2728791935192	78.278	0.85519	76.538	76.144	76.999	-1.7398					22	16	2	0	0	0	0.027402	1	6505	6505		66.429	13.078	1	21712	+		28213	22363	23118	23145	31476	31476					-0.012154551446201367
LDELDSFPR	9	Unmodified	_LDELDSFPR_					0	0	0			REV__ENSG00000183463|ENST00000332715|URAD	REV__ENSG00000183463|ENST00000332715|URAD	MULTI-MATCH	OvCa99_classI_Rep5	1		2	546.272021	1090.52949	1.9716	0.0010771	-0.098905	-5.4029E-05	1.8727	0.001023	546.2719358056487	76.703	1.0939	76.703	76.158	77.252	0	0.17129	-0.00017721	NaN	66.429	57	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1967300	+		28214	22363	23118	23145							-0.012154551446201367
LDELEEDFA	9	Unmodified	_LDELEEDFA_					0	0	0		tr|A0A553STU8|A0A553STU8_NIACIFour-carbonacidsugarkinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05650PE=3SV=1	tr|A0A553STU8|A0A553STU8_NIACIFour-carbonacidsugarkinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05650PE=3SV=1	tr|A0A553STU8|A0A553STU8_NIACIFour-carbonacidsugarkinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05650PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.2738647460938	2	540.740219	1079.46589	-1.6303	-0.00088157	-0.4599	-0.00024868	-2.0902	-0.0011303	540.7402385185537	71.615	0.78169	68.159	67.776	68.558	-3.4563					21	15	2	0	0	0	0.027462	1	5428	5428		24.203	0	1	77655			28215	34537	23119	23146	31477	31477					-0.07066860372378869
LDELEKLPV	9	Unmodified	_LDELEKLPV_					0	0	0		ENST00000463866.1_1_2:201736120-201746236:-|nuORF;ENSG00000240344|ENST00000392283|PPIL3;nc|ENSG00000240344|Q9H2H8-2|PPIL3	ENST00000463866.1_1_2:201736120-201746236:-|nuORF	ENST00000463866.1_1_2:201736120-201746236:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.30322265625	2	528.30279	1054.59103	-1.2291	-0.00064936	0.46731	0.00024688	-0.76183	-0.00040248	528.3027283949289	95.964	1.317	93.538	92.954	94.271	-2.4256					79	25	5	0	0	0	0.074342	1	8470	8470		104.75	19.586	1	624490			28216	9338	23120	23147	31478	31478					0.06591476554649489
LDELEKLPV	9	Unmodified	_LDELEKLPV_					0	0	0		ENST00000463866.1_1_2:201736120-201746236:-|nuORF;ENSG00000240344|ENST00000392283|PPIL3;nc|ENSG00000240344|Q9H2H8-2|PPIL3	ENST00000463866.1_1_2:201736120-201746236:-|nuORF	ENST00000463866.1_1_2:201736120-201746236:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	528.30279	1054.59103	-0.85614	-0.0004523	-0.079077	-4.1777E-05	-0.93522	-0.00049408	528.3025766948404	94.721	1.0815	93.621	93.165	94.246	-1.0995	0.057568	-0.0003282	NaN	104.75	66	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	392120			28217	9338	23120	23147							0.06591476554649489
LDELERMRQRR	11	Unmodified	_LDELERMRQRR_					0	0	0			REV__ENST00000521903.5_1_8:124361561-124413087:-|nuORF;REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF	REV__ENST00000521903.5_1_8:124361561-124413087:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	501.27520751953125	3	501.272053	1500.79433	2.485	0.0012456	3.4648	0.0017368	5.9497	0.0029824	501.2737845133326	75.151	0.64308	75.151	74.92	75.563	0					19	15	2	0	0	0	0.70315	1	7465	7465		28.577	0.93281	1	1359200	+		28218	20495;27016	23121	23148	31479	31479					0.06396271057315062
LDELGIHLTK	10	Unmodified	_LDELGIHLTK_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000590367.5_1_17:42931463-42950195:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.7868041992188	2	569.826963	1137.63937	3.6854	0.0021	2.4762	0.001411	6.1616	0.003511	569.8285890176251	88.449	0.12584	88.449	88.342	88.467	0					4	2	2	0	0	0	0.026891	1	9394	9394		31.53	0	1	167830			28219	2685	23122	23149	31480	31480					0.07605970194549627
LDEMRQKDP	9	Unmodified	_LDEMRQKDP_					0	0	0		ENSG00000174238|ENST00000313486|PITPNA	ENSG00000174238|ENST00000313486|PITPNA	ENSG00000174238|ENST00000313486|PITPNA	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.2799072265625	2	566.27678	1130.53901	2.9222	0.0016548	2.5154	0.0014244	5.4376	0.0030792	566.2772979541994	137.4	0.82829	135.85	135.37	136.2	-1.5437					32	16	3	0	0	0	0.61365	1	13339	13339		30.318	1.1682	1	37133			28220	7451	23123	23150	31481	31481					-0.021040101307335135
LDEMRQKDP	9	Unmodified	_LDEMRQKDP_					0	0	0		ENSG00000174238|ENST00000313486|PITPNA	ENSG00000174238|ENST00000313486|PITPNA	ENSG00000174238|ENST00000313486|PITPNA	MULTI-MATCH	OvCa9_classI_Rep2	2		2	566.27678	1130.53901	-0.40757	-0.0002308	6.5478	0.0037079	6.1403	0.0034771	566.2800641670208	136.24	0.98163	136.02	135.52	136.5	-0.22696	0.082547	0.0012733	NaN	30.318	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36272			28221	7451	23123	23150							-0.021040101307335135
LDENISKVSKE	11	Unmodified	_LDENISKVSKE_					0	0	0		nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-MSMS	OvCa9_classI_Rep2	2	631.334228515625	2	631.33535	1260.65615	-0.24957	-0.00015756	1.9404	0.0012251	1.6908	0.0010675	631.3365935308134	66.385	1.4888	63.689	63.418	64.907	-2.6958					83	29	4	0	0	0	0.43443	1	5161	5161		41.427	19.467	1	672470			28222	2599	23124	23151	31482	31482					0.03624426289843541
LDENQTMQI	9	Unmodified	_LDENQTMQI_					0	0	0			REV__ENSG00000085382|ENST00000262903|HACE1	REV__ENSG00000085382|ENST00000262903|HACE1	MULTI-MSMS	OvCa9_classI_Rep3	3	546.2533569335938	2	546.255514	1090.49647	0.83945	0.00045855	-4.3456	-0.0023738	-3.5062	-0.0019153	546.252954781133	120.47	3.1949	119.44	119.02	122.21	-1.0271					129	61	5	0	0	0	0.37135	2	9179	9179;9191		54.776	3.599	1	501180	+		28223	17133	23125	23152	31483;31484	31483					-0.04515405258962346
LDENQTMQI	9	Unmodified	_LDENQTMQI_					0	0	0			REV__ENSG00000085382|ENST00000262903|HACE1	REV__ENSG00000085382|ENST00000262903|HACE1	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.2521362304688	2	546.255514	1090.49647	-1.0578	-0.00057781	-2.4113	-0.0013172	-3.4691	-0.001895	546.2540824199572	120.78	3.5873	119.44	118.98	122.56	-1.3479					124	70	4	0	0	0	0.44568	1	11391	11391		47.657	6.8792	1	370910	+		28224	17133	23125	23152	31485	31485					-0.04515405258962346
LDEPLGALDL	10	Unmodified	_LDEPLGALDL_					0	0	0		tr|A0A7D7A262|A0A7D7A262_9CLOTSpermidine/putrescineimportATP-bindingproteinPotAOS=ClostridiumintestinaleOX=36845GN=potAPE=3SV=1;tr|A0A7D6ZYH4|A0A7D6ZYH4_9CLOTSpermidine/putrescineimportATP-bindingproteinPotAOS=ClostridiumintestinaleOX=36845GN=potAPE=3SV=1	tr|A0A7D7A262|A0A7D7A262_9CLOTSpermidine/putrescineimportATP-bindingproteinPotAOS=ClostridiumintestinaleOX=36845GN=potAPE=3SV=1	tr|A0A7D7A262|A0A7D7A262_9CLOTSpermidine/putrescineimportATP-bindingproteinPotAOS=ClostridiumintestinaleOX=36845GN=potAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	528.2847290039062	2	528.284597	1054.55464	-1.7589	-0.00092921	1.7414	0.00091994	-0.017547	-9.2698E-06	528.2853995863809	141.02	1.0894	140.79	140.48	141.57	-0.22697					51	21	4	0	0	0	0.53885	2	14152	14145;14152		49.442	7.0454	1	215050			28225	36065	23126	23153	31486;31487	31487					0.029545996579599887
LDEPLGALDL	10	Unmodified	_LDEPLGALDL_					0	0	0		tr|A0A7D7A262|A0A7D7A262_9CLOTSpermidine/putrescineimportATP-bindingproteinPotAOS=ClostridiumintestinaleOX=36845GN=potAPE=3SV=1;tr|A0A7D6ZYH4|A0A7D6ZYH4_9CLOTSpermidine/putrescineimportATP-bindingproteinPotAOS=ClostridiumintestinaleOX=36845GN=potAPE=3SV=1	tr|A0A7D7A262|A0A7D7A262_9CLOTSpermidine/putrescineimportATP-bindingproteinPotAOS=ClostridiumintestinaleOX=36845GN=potAPE=3SV=1	tr|A0A7D7A262|A0A7D7A262_9CLOTSpermidine/putrescineimportATP-bindingproteinPotAOS=ClostridiumintestinaleOX=36845GN=potAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	528.2843017578125	2	528.284597	1054.55464	-2.691	-0.0014216	2.5626	0.0013538	-0.12841	-6.7835E-05	528.2858404974387	141.55	1.2874	140.54	140.14	141.43	-1.0106					66	25	4	0	0	0	0.5675	1	11706	11706		45.972	3.5761	1	289450			28226	36065	23126	23153	31488	31488					0.029545996579599887
LDEVKCAKLV	10	Unmodified	_LDEVKCAKLV_					0	0	0			REV__WDR48|p.N504Afs*10|1|0.18|ENSG00000114742|chr3:39088161-39088177|GAAATGGATATTTTCAA/-|frameshift_variant	REV__WDR48|p.N504Afs*10|1|0.18|ENSG00000114742|chr3:39088161-39088177|GAAATGGATATTTTCAA/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.7936401367188	2	559.317917	1116.62128	0.75145	0.0004203	0.31686	0.00017722	1.0683	0.00059753	559.3180111737765	105.5	0.65549	105.5	105.27	105.92	0					30	14	3	0	0	0	0.026942	1	11866	11866		32.751	0	1	1403800	+		28227	18199	23127	23154	31489	31489					0.06763511948179257
LDEWDKLL	8	Unmodified	_LDEWDKLL_					0	0	0		tr|A0A553SL90|A0A553SL90_NIACI3'-5'exonucleaseDinGOS=NialliacirculansOX=1397GN=dinGPE=3SV=1	tr|A0A553SL90|A0A553SL90_NIACI3'-5'exonucleaseDinGOS=NialliacirculansOX=1397GN=dinGPE=3SV=1	tr|A0A553SL90|A0A553SL90_NIACI3'-5'exonucleaseDinGOS=NialliacirculansOX=1397GN=dinGPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.8048095703125	2	516.274032	1030.53351	-1.1557	-0.00059667	-4.3372	-0.0022392	-5.493	-0.0028359	516.2724560682649	55.44	0.86512	52.146	51.803	52.668	-3.2944					38	16	4	0	0	0	0.028476	1	3479	3479		17.365	0	1	110310			28228	33696	23128	23155	31490	31490					0.01946634349087617
LDFALEEYVI	10	Unmodified	_LDFALEEYVI_					0	0	0		ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4;nc|ENSG00000134744|Q5TAX3-2|TUT4	ENSG00000134744|ENST00000257177|TUT4	ENSG00000134744|ENST00000257177|TUT4	MULTI-SECPEP	OvCa99_classI_Rep5	1	606.7547607421875	2	606.313354	1210.61216	2.0182	0.0012236	-1.934	-0.0011726	0.084199	5.1051E-05	606.3117002639094	112.59	0.72007	112.59	112.34	113.06	0					27	15	3	0	0	0	0.026915	1	12864	12864		27.882	1.1893	1	240990			28229	4322	23129	23156	31491	31491					0.015274418635272013
LDFALSIVY	9	Unmodified	_LDFALSIVY_					0	0	0		tr|A0A7D6ZWE6|A0A7D6ZWE6_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=HZF06_07575PE=4SV=1	tr|A0A7D6ZWE6|A0A7D6ZWE6_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=HZF06_07575PE=4SV=1	tr|A0A7D6ZWE6|A0A7D6ZWE6_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=HZF06_07575PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.7752075195312	2	520.786776	1039.559	-0.6374	-0.00033195	-0.071704	-3.7343E-05	-0.7091	-0.00036929	520.7876835686433	74.593	0.24255	71.362	71.24	71.483	-3.2308					6	4	2	0	0	0	0.027462	1	5843	5843		15.642	0	1	8198.4			28230	35839	23130	23157	31492	31492					0.04080108871517041
LDFFFQKPS	9	Unmodified	_LDFFFQKPS_					0	0	0		nc|ENSG00000041515|Q9Y6X6-3|MYO16;nc|ENSG00000041515|Q9Y6X6-4|MYO16;nc|ENSG00000041515|Q9Y6X6-2|MYO16;nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16;ENST00000375857.6_1_13:109445985-109707944:+|nuORF	nc|ENSG00000041515|Q9Y6X6-3|MYO16	nc|ENSG00000041515|Q9Y6X6-3|MYO16	MULTI-SECPEP	OvCa9_classI_Rep2	2	564.8104858398438	2	564.78985	1127.56515	0.2557	0.00014442	4.3381	0.0024501	4.5938	0.0025945	564.79333537646	108.18	0.44617	107.95	107.73	108.17	-0.22498					11	8	2	0	0	0	0.027462	1	10133	10133		19.997	5.1319	1	10336			28231	14870	23131	23158	31493	31493					0.006466271030376447
LDFFSVPAK	9	Unmodified	_LDFFSVPAK_					0	0	0		tr|A0A553SSA8|A0A553SSA8_NIACIAcetolactatesynthaseAlsSOS=NialliacirculansOX=1397GN=alsSPE=3SV=1	tr|A0A553SSA8|A0A553SSA8_NIACIAcetolactatesynthaseAlsSOS=NialliacirculansOX=1397GN=alsSPE=3SV=1	tr|A0A553SSA8|A0A553SSA8_NIACIAcetolactatesynthaseAlsSOS=NialliacirculansOX=1397GN=alsSPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	512.281982421875	2	512.279118	1022.54368	1.1228	0.00057519	-1.3985	-0.0007164	-0.27565	-0.00014121	512.2782138302921	155.44	0.4604	155.44	155.22	155.68	0					13	8	2	0	0	0	0.19758	1	18219	18219		76.774	34.378	1	146650			28232	34352	23132	23159	31494	31494					0.03331242074330021
LDFGSLSNL	9	Unmodified	_LDFGSLSNL_					0	0	0		ENST00000396783.2_1_6:29457050-29457287:-|nuORF;ENST00000561068.5_3_15:83205554-83208094:-|nuORF;ENST00000423610.1_1_22:32435574-32435880:+|nuORF;ENSG00000182774|ENST00000647841|RPS17	ENST00000396783.2_1_6:29457050-29457287:-|nuORF	ENST00000396783.2_1_6:29457050-29457287:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	483.2510681152344	2	483.250557	964.486562	0.80856	0.00039074	1.6332	0.00078926	2.4418	0.00118	483.2512267918651	140.16	1.055	140.16	139.88	140.93	0					49	21	3	0	0	0	0.011767	1	16358	16358		163.15	49.739	1	709780			28233	8024	23133	23160	31495	31495					0.002897747979545784
LDFIRAFLL	9	Unmodified	_LDFIRAFLL_					0	0	0		ENST00000373887.7_1_9:123688936-123689077:-|nuORF	ENST00000373887.7_1_9:123688936-123689077:-|nuORF	ENST00000373887.7_1_9:123688936-123689077:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	554.3333740234375	2	554.331685	1106.64882	1.2798	0.00070944	0.44245	0.00024527	1.7223	0.00095471	554.3318219733803	145.31	1.6317	145.31	144.99	146.62	0					56	33	3	0	0	0	0.33652	1	17006	17006		58.782	0	1	261590			28234	11018	23134	23161	31496	31496					0.09975783270760985
LDFISKLMN	9	Unmodified	_LDFISKLMN_					0	0	0		sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1;sp|F5HC79|TRM1_HCMVMTripartiteterminasesubunit1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=TRM1PE=3SV=1	sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1	sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.284423828125	2	540.791535	1079.56852	1.7265	0.00093366	-1.4956	-0.00080881	0.23087	0.00012485	540.7911428389132	127.86	0.36807	127.86	127.63	128	0					10	7	2	0	0	0	0.027462	1	14820	14820		32.812	0	1	74513			28235	32855	23135	23162	31497	31497					0.03191553885403664
LDFISKLMN	9	Unmodified	_LDFISKLMN_					0	0	0		sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1;sp|F5HC79|TRM1_HCMVMTripartiteterminasesubunit1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=TRM1PE=3SV=1	sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1	sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	540.791535	1079.56852	1.2807	0.00069259	5.8591	0.0031686	7.1398	0.0038612	540.7944559300183	129.14	0.93912	128.03	127.5	128.44	-1.1121	0.08559	0.001636	NaN	40.778	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18411			28236	32855	23135	23162							0.03191553885403664
LDFLDPFLLL	10	Unmodified	_LDFLDPFLLL_					0	0	0		nc|ENSG00000021461|Q9HB55-4|CYP3A43;CYP3A43|p.V394Sfs*4|1|0.05|ENSG00000021461|chr7:99861764-99861765|-/CTCTGCTG|frameshift_variant;CYP3A43|p.V394Yfs*7|1|0.04|ENSG00000021461|chr7:99861765-99861766|-/TATTGGCTGGACTCGCT|frameshift_variant;nc|ENSG00000021461|Q9HB55-3|CYP3A43;ENSG00000021461|ENST00000354829|CYP3A43;nc|ENSG00000021461|Q9HB55-2|CYP3A43	nc|ENSG00000021461|Q9HB55-4|CYP3A43	nc|ENSG00000021461|Q9HB55-4|CYP3A43	MULTI-SECPEP	OvCa99_classI_Rep5	1	602.8109130859375	2	603.344458	1204.67436	1.4592	0.0008804	-0.18735	-0.00011304	1.2719	0.00076737	603.3436599859033	123.56	0.46671	123.56	123.18	123.65	0					14	9	2	0	0	0	0.027056	1	14231	14231		20.947	1.8434	1	56063			28237	702	23136	23163	31498	31498					0.08021213002530203
LDFLLKKFI	9	Unmodified	_LDFLLKKFI_					0	0	0			REV__ENST00000469937.2_1_7:46729000-46799342:-|nuORF	REV__ENST00000469937.2_1_7:46729000-46799342:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	568.8531494140625	2	568.857535	1135.70052	-5.375	-0.0030576	-1.5179	-0.00086345	-6.8929	-0.0039211	568.8565433281535	160.72	1.3933	160.5	160.18	161.57	-0.22696					89	27	5	0	0	0	0.70177	1	16426	16426		17.365	0	1	747650	+		28238	26253	23137	23164	31499	31499					0.1380952696465556
LDFLQSPLF	9	Unmodified	_LDFLQSPLF_					0	0	0			REV__ENSG00000163596|ENST00000358299|ICA1L	REV__ENSG00000163596|ENST00000358299|ICA1L	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.2731323242188	2	540.292225	1078.5699	0.11354	6.1342E-05	-3.976	-0.0021482	-3.8624	-0.0020868	540.2897683792404	90.22	0.61623	88.139	87.592	88.209	-2.0805					15	11	2	0	0	0	0.027047	1	5533	5533		99.375	30.588	1	27799	+		28239	20857	23138	23165	31500	31500					0.033755112457811265
LDFLQSPLF	9	Unmodified	_LDFLQSPLF_					0	0	0			REV__ENSG00000163596|ENST00000358299|ICA1L	REV__ENSG00000163596|ENST00000358299|ICA1L	MULTI-MATCH	OvCa99_classI_Rep5	1		2	540.292225	1078.5699	3.4883	0.0018847	-7.3273	-0.0039589	-3.839	-0.0020742	540.2927055551396	88.431	0.83924	88.431	88.044	88.883	0	0.146	-0.0018107	NaN	99.375	45	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	458800	+		28240	20857	23138	23165							0.033755112457811265
LDFLRTVY	8	Unmodified	_LDFLRTVY_					0	0	0		nc|ENSG00000113407|P26639-2|TARS1;ENSG00000113407|ENST00000265112|TARS1;ENST00000509410.1_1_5:33461160-33466106:+|nuORF	nc|ENSG00000113407|P26639-2|TARS1	nc|ENSG00000113407|P26639-2|TARS1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.8080444335938	2	513.784567	1025.55458	0.09021	4.6349E-05	3.321	0.0017063	3.4112	0.0017526	513.7865305499811	112.14	0.57934	110.63	110.32	110.9	-1.5111					14	10	2	0	0	0	0.028476	1	10362	10362		34.173	8.7224	1	13111			28241	14966	23139	23166	31501	31501					0.04282644448608153
LDFRLVVRVIW	11	Unmodified	_LDFRLVVRVIW_					0	0	0			REV__tr|A0A7D6ZR02|A0A7D6ZR02_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_02560PE=4SV=1	REV__tr|A0A7D6ZR02|A0A7D6ZR02_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_02560PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.60955810546875	3	472.62224	1414.84489	1.8422	0.00087064	0.49802	0.00023537	2.3402	0.001106	472.62230093137265	93.169	0.25172	93.169	93.011	93.263	0					9	5	2	0	0	0	0.026204	1	10102	10102		16.53	0	1	240900	+		28242	32151	23140	23167	31502	31502					0.15406168444656032
LDFVPKIVE	9	Unmodified	_LDFVPKIVE_					0	0	0			REV__nc|ENSG00000110514|Q8WXG6-6|MADD	REV__nc|ENSG00000110514|Q8WXG6-6|MADD	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.7908935546875	2	530.307875	1058.6012	0.53656	0.00028454	1.98	0.00105	2.5166	0.0013346	530.3091906389325	160.73	0.35236	160.73	160.56	160.91	0					9	6	2	0	0	0	0.027459	1	18860	18860		36.447	0	1	13171	+		28243	17989	23141	23168	31503	31503					0.07424084279909948
LDFWNLAN	8	Unmodified	_LDFWNLAN_					0	0	0		tr|A0A7D6ZK05|A0A7D6ZK05_9CLOT1-deoxy-D-xylulose5-phosphatereductoisomeraseOS=ClostridiumintestinaleOX=36845GN=dxrPE=3SV=1	tr|A0A7D6ZK05|A0A7D6ZK05_9CLOT1-deoxy-D-xylulose5-phosphatereductoisomeraseOS=ClostridiumintestinaleOX=36845GN=dxrPE=3SV=1	tr|A0A7D6ZK05|A0A7D6ZK05_9CLOT1-deoxy-D-xylulose5-phosphatereductoisomeraseOS=ClostridiumintestinaleOX=36845GN=dxrPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.7627258300781	2	496.745442	991.476331	-0.65986	-0.00032778	-1.832	-0.00091004	-2.4919	-0.0012378	496.74417142396504	73.997	0.70952	70.766	70.434	71.144	-3.2308					29	14	3	0	0	0	0.028476	1	5779	5779		24.203	0	1	140820			28244	35654	23142	23169	31504	31504					-0.019747881366356523
LDGDEIKLNI	10	Unmodified	_LDGDEIKLNI_					0	0	0			REV__tr|A0A553SS96|A0A553SS96_NIACIGlycosidehydrolasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_02680PE=3SV=1	REV__tr|A0A553SS96|A0A553SS96_NIACIGlycosidehydrolasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_02680PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.3067016601562	2	565.308603	1128.60265	3.3072	0.0018696	-3.5134	-0.0019862	-0.20627	-0.0001166	565.3064668312807	136.75	0.73138	135.21	135.03	135.76	-1.5437					24	14	2	0	0	0	0.59317	1	13274	13274		42.864	1.4377	1	53938	+		28245	30814	23143	23170	31505	31505					0.043496735779854134
LDGFAKQKVI	10	Unmodified	_LDGFAKQKVI_					0	0	0			REV__ENSG00000115339|ENST00000392701|GALNT3	REV__ENSG00000115339|ENST00000392701|GALNT3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	560.2764282226562	2	559.832049	1117.64954	-1.0853	-0.00060759	0.68085	0.00038116	-0.40445	-0.00022642	559.8320918419419	108.32	0.75189	106.59	106.27	107.02	-1.7256					20	14	2	0	0	0	0.027198	1	9882	9882		14.137	3.2716	1	38103	+		28246	18237	23144	23171	31506	31506					0.09542577919796713
LDGFAKQKVI	10	Unmodified	_LDGFAKQKVI_					0	0	0			REV__ENSG00000115339|ENST00000392701|GALNT3	REV__ENSG00000115339|ENST00000392701|GALNT3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	559.832049	1117.64954	0.44226	0.00024759	-0.75396	-0.00042209	-0.3117	-0.0001745	559.8309779026214	106.88	0.74352	106.58	106.27	107.02	-0.30836	0.040048	-0.00043162	NaN	14.137	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19071	+		28247	18237	23144	23171							0.09542577919796713
LDGFAKQKVI	10	Unmodified	_LDGFAKQKVI_					0	0	0			REV__ENSG00000115339|ENST00000392701|GALNT3	REV__ENSG00000115339|ENST00000392701|GALNT3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	559.832049	1117.64954	-0.14209	-7.9548E-05	-0.59659	-0.00033399	-0.73868	-0.00041354	559.8315451969788	107.71	0.63358	106.44	106.25	106.89	-1.267	-0.096371	-0.00025542	NaN	14.137	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34885	+		28248	18237	23144	23171							0.09542577919796713
LDGGRLFDLI	10	Unmodified	_LDGGRLFDLI_					0	0	0			REV__ENST00000474934.1_1_1:26877949-26879989:+|nuORF	REV__ENST00000474934.1_1_1:26877949-26879989:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	559.81640625	2	559.813856	1117.61316	2.0742	0.0011611	3.1356	0.0017553	5.2097	0.0029165	559.8156915922438	133.1	8.2265	133.1	132.6	140.83	0					464	175	6	0	0	0	0.37436	1	15602	15602		71.877	3.0906	1	47573000	+		28249	16901	23145	23172	31507	31507					0.05905701023084475
LDGGRLFDLI	10	Unmodified	_LDGGRLFDLI_					0	0	0			REV__ENST00000474934.1_1_1:26877949-26879989:+|nuORF	REV__ENST00000474934.1_1_1:26877949-26879989:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	559.8158569335938	2	559.813856	1117.61316	-0.97774	-0.00054735	4.3631	0.0024425	3.3854	0.0018952	559.8160584775942	134.25	2.5628	133.13	132.52	135.08	-1.1226					125	51	4	0	0	0	0.60504	1	10806	10806		41.427	5.8083	1	225320	+		28250	16901	23145	23172	31508	31508					0.05905701023084475
LDGHKIKLL	9	Unmodified	_LDGHKIKLL_					0	0	0			REV__ENST00000570300.1_1_17:79575918-79596804:-|nuORF	REV__ENST00000570300.1_1_17:79575918-79596804:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	518.8289794921875	2	518.829309	1035.64407	-0.53777	-0.00027901	0.10892	5.6512E-05	-0.42884	-0.0002225	518.8292895658562	121.25	2.223	121.05	120.51	122.73	-0.19719					126	44	4	0	0	0	0.24951	1	11715	11715		68.787	2.3575	1	627930	+		28251	22292	23146	23173	31509	31509					0.12766899127996112
LDGIIYIVTS	10	Unmodified	_LDGIIYIVTS_					0	0	0			REV__tr|A0A553SR86|A0A553SR86_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00630PE=3SV=1	REV__tr|A0A553SR86|A0A553SR86_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00630PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.267822265625	2	547.310615	1092.60668	-0.48966	-0.000268	-3.5265	-0.0019301	-4.0162	-0.0021981	547.3086676703086	63.745	1.1609	60.27	59.964	61.125	-3.475					31	23	2	0	0	0	0.026956	1	4545	4545		34.173	0	1	285000	+		28252	30702	23147	23174	31510	31510					0.0640776307170654
LDGIPCSDYI	10	Unmodified	_LDGIPCSDYI_					0	0	0		nc|ENSG00000132334|P23469-3|PTPRE;nc|ENSG00000132334|P23469-2|PTPRE;ENSG00000132334|ENST00000254667|PTPRE	nc|ENSG00000132334|P23469-3|PTPRE	nc|ENSG00000132334|P23469-3|PTPRE	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.8060302734375	2	548.254982	1094.49541	-2.5155	-0.0013791	-4.4074	-0.0024164	-6.9229	-0.0037955	548.2523546501079	103.92	0.29364	103.92	103.73	104.02	0					8	6	2	0	0	0	0.026956	1	11620	11620		34.173	13.226	1	121350			28253	4130	23148	23175	31511	31511					-0.04805619627904889
LDGLEDEIRLL	11	Unmodified	_LDGLEDEIRLL_					0	0	0			REV__tr|A0A553SJ41|A0A553SJ41_NIACIEnolaseOS=NialliacirculansOX=1397GN=enoPE=3SV=1	REV__tr|A0A553SJ41|A0A553SJ41_NIACIEnolaseOS=NialliacirculansOX=1397GN=enoPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	429.2640075683594	3	429.23812	1284.69253	0.12628	5.4205E-05	-2.1895	-0.00093984	-2.0633	-0.00088563	429.23698772401707	40.926	0.98502	38.216	38.093	39.078	-2.7097					20	19	2	0	0	0	0.025551	1	2119	2119		30.569	10.538	1	18020	+		28254	29962	23149	23176	31512	31512					0.06157303186569152
LDGLLPPHV	9	Unmodified	_LDGLLPPHV_					0	0	0		tr|A0A553SGR5|A0A553SGR5_NIACINAD-dependentmalicenzymeOS=NialliacirculansOX=1397GN=CEQ21_11380PE=3SV=1	tr|A0A553SGR5|A0A553SGR5_NIACINAD-dependentmalicenzymeOS=NialliacirculansOX=1397GN=CEQ21_11380PE=3SV=1	tr|A0A553SGR5|A0A553SGR5_NIACINAD-dependentmalicenzymeOS=NialliacirculansOX=1397GN=CEQ21_11380PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.2964782714844	2	480.779285	959.544017	-0.81384	-0.00039128	3.3906	0.0016301	2.5768	0.0012389	480.7806857929073	93.196	0.8474	90.689	90.212	91.059	-2.5072					27	16	2	0	0	0	0.027441	1	8149	8149		18.324	0	1	83420			28255	33186	23150	23177	31513	31513					0.06262661794175983
LDGLVDEP	8	Unmodified	_LDGLVDEP_					0	0	0			REV__tr|A0A7D6VXZ5|A0A7D6VXZ5_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10720PE=3SV=1	REV__tr|A0A7D6VXZ5|A0A7D6VXZ5_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10720PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	430.2101135253906	2	429.216183	856.417813	1.4151	0.0006074	-0.87664	-0.00037627	0.53849	0.00023113	429.21588800281626	113.52	0.67092	112.44	112.15	112.82	-1.0753					21	12	2	0	0	0	0.028476	1	8354	8354		31.955	12.595	1	25144	+		28256	31798	23151	23178	31514	31514					-0.01613889501754784
LDGLVDEP	8	Unmodified	_LDGLVDEP_					0	0	0			REV__tr|A0A7D6VXZ5|A0A7D6VXZ5_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10720PE=3SV=1	REV__tr|A0A7D6VXZ5|A0A7D6VXZ5_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10720PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	429.216183	856.417813	0.32029	0.00013747	0.30047	0.00012897	0.62076	0.00026644	429.2163698236587	112.68	1.0851	112.56	112.23	113.31	-0.12173	0.050085	0.00055056	NaN	24.203	30	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17458	+		28257	31798	23151	23178							-0.01613889501754784
LDGMGCRRGP	10	Unmodified	_LDGMGCRRGP_					0	0	0			REV__ENST00000520794.1_1_5:179290450-179293075:-|nuORF	REV__ENST00000520794.1_1_5:179290450-179293075:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2883911132812	2	531.252585	1060.49062	2.6609	0.0014136	1.1583	0.00061535	3.8192	0.002029	531.2531780257907	100.99	0.58449	100.99	100.69	101.27	0					19	13	2	0	0	0	0.026697	1	11252	11252		29.15	1.2673	1	341460	+		28258	27060	23152	23179	31515	31515					-0.037207822516165834
LDGMHVKND	9	Unmodified	_LDGMHVKND_					0	0	0			REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	REV__nc|ENSG00000154930|Q9NUB1-3|ACSS1	MULTI-SECPEP	OvCa9_classI_Rep2	2	514.3113403320312	2	514.745116	1027.47568	-1.0626	-0.00054695	3.6033	0.0018548	2.5407	0.0013078	514.7464353663887	52.775	0.34423	49.961	49.887	50.231	-2.8139					10	6	2	0	0	0	0.02744	1	3541	3541		52.937	19.015	1	10454	+		28259	20406	23153	23180	31516	31516					-0.036959508479640135
LDGNIVIGKP	10	Unmodified	_LDGNIVIGKP_					0	0	0		tr|A0A7D6ZFZ4|A0A7D6ZFZ4_9CLOTPhageportalproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20110PE=4SV=1	tr|A0A7D6ZFZ4|A0A7D6ZFZ4_9CLOTPhageportalproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20110PE=4SV=1	tr|A0A7D6ZFZ4|A0A7D6ZFZ4_9CLOTPhageportalproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20110PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	512.8350219726562	2	513.303124	1024.5917	-0.31748	-0.00016296	-0.7893	-0.00040515	-1.1068	-0.00056811	513.3023941140683	90.283	0.56336	88.203	87.747	88.31	-2.0805					17	10	3	0	0	0	0.026891	1	5546	5546		31.53	1.2121	1	110620			28260	35530	23154	23181	31517	31517					0.0803831599437217
LDGNIVIGKP	10	Unmodified	_LDGNIVIGKP_					0	0	0		tr|A0A7D6ZFZ4|A0A7D6ZFZ4_9CLOTPhageportalproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20110PE=4SV=1	tr|A0A7D6ZFZ4|A0A7D6ZFZ4_9CLOTPhageportalproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20110PE=4SV=1	tr|A0A7D6ZFZ4|A0A7D6ZFZ4_9CLOTPhageportalproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20110PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	513.303124	1024.5917	-0.15769	-8.0943E-05	-1.7236	-0.0008847	-1.8812	-0.00096565	513.3020007351041	90.761	0.35898	88.186	87.853	88.212	-2.575	-0.058941	-0.0014644	NaN	47.657	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129570			28261	35530	23154	23181							0.0803831599437217
LDGPHDTIIV	10	Unmodified	_LDGPHDTIIV_					0	0	0			REV__nc|ENSG00000284690|A0A0K2S4Q6-2|CD300H	REV__nc|ENSG00000284690|A0A0K2S4Q6-2|CD300H	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.8094482421875	2	540.290214	1078.56587	2.4764	0.001338	3.7547	0.0020286	6.2312	0.0033666	540.7945328014359	100.57	0.41061	100.57	100.49	100.9	0					11	9	2	0	0	0	0.026802	1	11180	11180		26.693	3.6504	1	164960	+		28262	29200	23155	23182	31518	31518					0.029734217520854145
LDGPHRDKLT	10	Unmodified	_LDGPHRDKLT_					0	0	0			REV__ENSG00000137338|ENST00000682144|PGBD1	REV__ENSG00000137338|ENST00000682144|PGBD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.2842407226562	2	576.312012	1150.60947	1.7998	0.0010372	3.0966	0.0017846	4.8964	0.0028219	576.3126768467498	96.803	0.38013	96.803	96.501	96.881	0					14	8	3	0	0	0	0.026826	1	10606	10606		36.447	20.805	1	223690	+		28263	19446	23156	23183	31519	31519					0.04019031249231375
LDGRYITE	8	Unmodified	_LDGRYITE_					0	0	0		tr|A0A7D6W431|A0A7D6W431_9CLOTAminopeptidasePfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07395PE=4SV=1	tr|A0A7D6W431|A0A7D6W431_9CLOTAminopeptidasePfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07395PE=4SV=1	tr|A0A7D6W431|A0A7D6W431_9CLOTAminopeptidasePfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07395PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.2930908203125	2	483.748182	965.481811	-0.99305	-0.00048039	0.59302	0.00028687	-0.40003	-0.00019351	483.74844577863985	95.155	0.8008	92.686	92.36	93.161	-2.4685					23	15	2	0	0	0	0.028476	1	8384	8384		26.796	0	1	46882			28264	35467	23157	23184	31520	31520					-0.002311093448270185
LDGSEKVVL	9	Unmodified	_LDGSEKVVL_					0	0	0		ENSG00000168702|ENST00000389484|LRP1B;LRP1B|p.Y2986Sfs*28|1|0.8|ENSG00000168702|chr2:140495631-140495643|TGTAAGTCCCGTA/-|frameshift_variant	ENSG00000168702|ENST00000389484|LRP1B	ENSG00000168702|ENST00000389484|LRP1B	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.2745056152344	2	480.274032	958.533512	-0.60525	-0.00029068	-0.16153	-7.758E-05	-0.76678	-0.00036826	480.27392490834393	80.008	1.8075	77.257	76.891	78.698	-2.7514					121	36	5	0	0	0	0.14998	1	6599	6599		84.916	8.1414	1	3550800			28265	6934	23158	23185	31521	31521					0.05258634349092972
LDGSFVELIE	10	Unmodified	_LDGSFVELIE_					0	0	0			REV__ENSG00000042781|ENST00000307340|USH2A	REV__ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	OvCa9_classI_Rep2	2	560.8295288085938	2	561.289879	1120.56521	-0.82516	-0.00046315	0.32697	0.00018352	-0.49819	-0.00027963	561.2897889179015	117.91	1.4398	117.76	117.09	118.53	-0.14755					40	28	2	0	0	0	0.026734	1	11227	11227		31.53	0	1	40858	+		28266	16642	23159	23186	31522	31522					0.009745823124148956
LDGSRKSL	8	Unmodified	_LDGSRKSL_					0	0	0		ENST00000483450.1_1_6:28962780-28967471:-|nuORF;ENSG00000197935|ENST00000377179|ZNF311	ENST00000483450.1_1_6:28962780-28967471:-|nuORF	ENST00000483450.1_1_6:28962780-28967471:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	438.250732421875	2	438.250892	874.48723	-0.59791	-0.00026204	0.25648	0.0001124	-0.34143	-0.00014963	438.2509557447157	40.557	1.9268	37.603	37.315	39.242	-2.9541					110	36	5	0	0	0	0.61436	1	1792	1792		60.972	5.4677	1	1459300			28267	8764	23160	23187	31523	31523					0.04496614237655194
LDGSTVQRND	10	Unmodified	_LDGSTVQRND_					0	0	0			REV__tr|A0A7D6VMB6|A0A7D6VMB6_9CLOTUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=ClostridiumintestinaleOX=36845GN=murEPE=3SV=1	REV__tr|A0A7D6VMB6|A0A7D6VMB6_9CLOTUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=ClostridiumintestinaleOX=36845GN=murEPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.7923583984375	2	552.767634	1103.52072	2.8518	0.0015764	-1.5209	-0.00084073	1.3308	0.00073563	553.2691125618577	100.96	0.16519	100.96	100.9	101.06	0					5	3	2	0	0	0	0.026694	1	11225	11225		63.534	14.092	1	74560	+		28268	31129	23161	23188	31524	31524					-0.026904287811021277
LDGVSELRHS	10	Unmodified	_LDGVSELRHS_					0	0	0		ENSG00000136535|ENST00000389554|TBR1	ENSG00000136535|ENST00000389554|TBR1	ENSG00000136535|ENST00000389554|TBR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.3229370117188	2	556.78837	1111.56219	0.96669	0.00053824	3.6699	0.0020433	4.6365	0.0025816	556.7920833802342	90.082	0.45354	87.507	87.399	87.853	-2.575					10	8	2	0	0	0	0.026653	1	7780	7780		41.427	4.2675	1	17055			28269	4495	23162	23189	31525	31525					0.010867519782550517
LDGWEIGQGV	10	Unmodified	_LDGWEIGQGV_					0	0	0			REV__tr|A0A7D6ZRE2|A0A7D6ZRE2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12335PE=4SV=1	REV__tr|A0A7D6ZRE2|A0A7D6ZRE2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12335PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.810791015625	2	537.266739	1072.51892	0.2043	0.00010976	-0.43181	-0.000232	-0.22751	-0.00012223	537.2663813399002	58.031	1.1615	58.031	57.65	58.812	0					67	27	3	0	0	0	0.026522	1	4930	4930		75.043	25.602	1	1839100	+		28270	32156	23163	23190	31526	31526					-0.014434377990482972
LDGYYCDHEQ	10	Unmodified	_LDGYYCDHEQ_					0	0	0		nc|ENSG00000073670|O75078-2|ADAM11;ENSG00000073670|ENST00000200557|ADAM11	nc|ENSG00000073670|O75078-2|ADAM11	nc|ENSG00000073670|O75078-2|ADAM11	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.90850830078125	3	414.829244	1241.4659	0.15396	6.3866E-05	0.086526	3.5893E-05	0.24048	9.976E-05	415.16318163054257	42.468	0.46547	42.468	42.199	42.665	0					22	10	3	0	0	0	0.027115	1	2753	2753		24.232	5.7008	1	65650			28271	1496	23164	23191	31527	31527					-0.14517183644034048
LDHETQPV	8	Unmodified	_LDHETQPV_					0	0	0		ENSG00000197410|ENST00000357232|DCHS2;nc|ENSG00000197410|Q6V1P9-5|DCHS2	ENSG00000197410|ENST00000357232|DCHS2	ENSG00000197410|ENST00000357232|DCHS2	MULTI-SECPEP	OvCa9_classI_Rep3	3	469.29449462890625	2	469.732532	937.45051	-0.10603	-4.9803E-05	-0.48156	-0.00022621	-0.58759	-0.00027601	469.73221698322425	102.49	1.4119	100.97	100.69	102.1	-1.5211					37	26	2	0	0	0	0.028476	1	7175	7175		31.955	1.4512	1	67983			28272	8709	23165	23192	31528	31528					-0.02071682378903006
LDHLFSEP	8	Unmodified	_LDHLFSEP_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.3040466308594	2	479.23745	956.460347	1.7472	0.00083733	-3.1739	-0.0015211	-1.4267	-0.00068375	479.2355207748067	110.06	0.4074	110.06	109.86	110.27	0					12	8	2	0	0	0	0.028476	1	12494	12494		42.474	6.8562	1	77146	+		28273	29089	23166	23193	31529	31529					-0.019624943735266243
LDHNVLVKL	9	Unmodified	_LDHNVLVKL_					0	0	0		tr|A0A7D6VRY6|A0A7D6VRY6_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07490PE=4SV=1	tr|A0A7D6VRY6|A0A7D6VRY6_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07490PE=4SV=1	tr|A0A7D6VRY6|A0A7D6VRY6_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07490PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	525.8192138671875	2	525.818941	1049.62333	-1.4795	-0.00077795	1.0475	0.0005508	-0.432	-0.00022715	525.8193652814851	93.871	1.5687	91.909	91.476	93.045	-1.9617					67	30	4	0	0	0	0.34132	1	6043	6043		58.23	1.5089	1	850070			28274	34966	23167	23194	31530	31530					0.10050308748327552
LDHPDLFQN	9	Unmodified	_LDHPDLFQN_					0	0	0		ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	MULTI-MSMS	OvCa99_classI_Rep5	1	549.76123046875	2	549.764363	1097.51417	1.0082	0.00055426	0.36375	0.00019998	1.3719	0.00075424	549.7642897467599	149.63	2.5698	149.63	149.31	151.88	0					74	51	2	0	0	0	0.24951	3	17614	17614;17621;17769		68.787	8.9393	1	363850			28275	7253	23168	23195	31531;31532;31533	31531					-0.030683219418278895
LDHPDLFQN	9	Unmodified	_LDHPDLFQN_					0	0	0		ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	ENSG00000171951|ENST00000305409|SCG2	MULTI-MSMS	OvCa99_classI_Rep5	1	549.763427734375	2	549.764363	1097.51417	0.74232	0.0004081	-2.4274	-0.0013345	-1.6851	-0.0009264	549.7629575946962	154.06	4.3631	154.06	151.88	156.24	0					128	91	2	0	0	0	0.40667	1	17793	17793		51.335	1.8939	1	70978			28276	7253	23168	23195	31534	31534					-0.030683219418278895
LDHQFDSLV	9	Unmodified	_LDHQFDSLV_					0	0	0			REV__ENSG00000147697|ENST00000276708|GSDMC	REV__ENSG00000147697|ENST00000276708|GSDMC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.3057250976562	2	537.266739	1072.51892	-0.86034	-0.00046223	-3.7075	-0.0019919	-4.5678	-0.0024541	537.7644324472941	102.48	0.42131	100.28	100.1	100.52	-2.1994					11	7	2	0	0	0	0.027462	1	9218	9218		27.882	5.3026	1	9396	+		28277	20081	23169	23196	31535	31535					-0.014434377990482972
LDHVIRSNALK	11	Unmodified	_LDHVIRSNALK_					0	0	0		tr|A0A553SH45|A0A553SH45_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_12130PE=3SV=1	tr|A0A553SH45|A0A553SH45_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_12130PE=3SV=1	tr|A0A553SH45|A0A553SH45_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_12130PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.3674926757812	2	633.369861	1264.72517	-2.6571	-0.001683	1.5103	0.00095658	-1.1468	-0.00072637	633.3706685096566	150.42	2.9234	148.98	147.78	150.7	-1.4344					195	63	4	0	0	0	0.71789	1	14823	14823		23.523	1.5628	1	147740			28278	33237	23170	23197	31536	31536					0.1033955510006308
LDICEFIDN	9	Unmodified	_LDICEFIDN_					0	0	0		ENSG00000127585|ENST00000397621|FBXL16	ENSG00000127585|ENST00000397621|FBXL16	ENSG00000127585|ENST00000397621|FBXL16	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.806884765625	2	541.247157	1080.47976	-0.30438	-0.00016474	-3.1352	-0.0016969	-3.4396	-0.0018617	541.2454170126365	65.329	0.35759	65.329	65.15	65.507	0					11	8	2	0	0	0	0.027462	1	6010	6010		27.882	1.1893	1	186880			28279	3841	23171	23198	31537	31537					-0.0572590614492583
LDIDKLVHL	9	Unmodified	_LDIDKLVHL_					0	0	0			REV__tr|A0A7D6VSV7|A0A7D6VSV7_9CLOTAminoacidABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18275PE=3SV=1	REV__tr|A0A7D6VSV7|A0A7D6VSV7_9CLOTAminoacidABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18275PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.31591796875	2	533.318774	1064.623	-0.80981	-0.00043189	0.31819	0.00016969	-0.49162	-0.00026219	533.3187898534811	123.14	1.0894	121.77	121.46	122.55	-1.3666					47	21	3	0	0	0	0.55011	1	11631	11631		37.812	0.65241	1	110230	+		28280	31544	23172	23199	31538	31538					0.09326889028466212
LDIDVEKLT	9	Unmodified	_LDIDVEKLT_					0	0	0		PIK3C2A|p.F1330Sfs*13|1|0.04|ENSG00000011405|chr11:17101297-17101298|-/TAACATTTTAGAAAGAG|frameshift_variant;ENSG00000011405|ENST00000691414|PIK3C2A;nc|ENSG00000011405|O00443-2|PIK3C2A	PIK3C2A|p.F1330Sfs*13|1|0.04|ENSG00000011405|chr11:17101297-17101298|-/TAACATTTTAGAAAGAG|frameshift_variant	PIK3C2A|p.F1330Sfs*13|1|0.04|ENSG00000011405|chr11:17101297-17101298|-/TAACATTTTAGAAAGAG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.2587890625	2	523.292422	1044.57029	-1.8177	-0.00095119	1.6226	0.00084907	-0.19515	-0.00010212	523.2932965176681	35.228	0.79536	32.518	32.306	33.102	-2.7097					29	15	3	0	0	0	0.027462	1	1423	1423		26.693	1.1189	1	16234			28281	964	23173	23200	31539	31539					0.04978886175013031
LDIERPLVV	9	Unmodified	_LDIERPLVV_					0	0	0			REV__ENST00000526698.1_1_11:1501682-1502057:-|nuORF	REV__ENST00000526698.1_1_11:1501682-1502057:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	527.2726440429688	2	527.318774	1052.623	-1.2995	-0.00068528	0.80073	0.00042224	-0.49882	-0.00026304	527.3191335272734	96.682	0.62103	94.853	94.724	95.345	-1.8286					12	11	2	0	0	0	0.027462	1	6404	6404		33.516	3.1979	1	16911	+		28282	22270	23174	23201	31540	31540					0.09878889028482263
LDIETRKIV	9	Unmodified	_LDIETRKIV_					0	0	0		ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7880859375	2	543.829506	1085.64446	2.1103	0.0011476	-2.3555	-0.001281	-0.2452	-0.00013335	543.8284898988823	113.05	0.54461	113.05	112.7	113.24	0					18	11	2	0	0	0	0.027418	1	12895	12895		58.782	14.405	1	216830			28283	4348	23175	23202	31541	31541					0.10506274057183873
LDIFSTDINLI	11	Unmodified	_LDIFSTDINLI_					0	0	0		tr|A0A7D6VRE9|A0A7D6VRE9_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19170PE=4SV=1	tr|A0A7D6VRE9|A0A7D6VRE9_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19170PE=4SV=1	tr|A0A7D6VRE9|A0A7D6VRE9_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19170PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	632.34619140625	2	632.345186	1262.67582	-1.5963	-0.0010094	-0.12213	-7.723E-05	-1.7184	-0.0010866	632.345049771065	99.719	1.3387	98.889	98.716	100.06	-0.83051					67	26	4	0	0	0	0.29406	1	9096	9096		68.846	3.3808	1	211480			28284	34924	23176	23203	31542	31542					0.054988023006444564
LDIGSVKK	8	Unmodified	_LDIGSVKK_					0	0	0		ENSG00000130052|ENST00000374599|STARD8	ENSG00000130052|ENST00000374599|STARD8	ENSG00000130052|ENST00000374599|STARD8	MULTI-MSMS	OvCa99_classI_Rep5	1	430.265869140625	2	430.26601	858.517468	-0.46418	-0.00019972	0.45222	0.00019457	-0.011963	-5.1474E-06	430.2660930382368	39.61	1.1468	39.61	39.332	40.479	0					42	25	3	0	0	0	0.23117	1	2334	2334		119.56	9.2196	1	611950			28285	3955	23177	23204	31543	31543					0.08254972902852842
LDIIIHSL	8	Unmodified	_LDIIIHSL_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5-VWA3B|1|fusion	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	OvCa9_classI_Rep2	2	462.28125	2	462.28166	922.548768	-0.31533	-0.00014577	1.5811	0.0007309	1.2657	0.00058513	462.2816240398439	114.69	2.0254	114.58	114.16	116.18	-0.11777					96	40	3	0	0	0	0.56195	1	10936	10936		71.296	2.5089	1	274680			28286	1607	23178	23205	31544	31544					0.08439545936960258
LDIIIHSL	8	Unmodified	_LDIIIHSL_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5-VWA3B|1|fusion	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	OvCa9_classI_Rep3	3	462.28173828125	2	462.28166	922.548768	-0.47671	-0.00022038	-0.3521	-0.00016277	-0.82881	-0.00038314	462.2813772603221	115.55	1.5308	114.51	114.21	115.74	-1.0414					54	30	2	0	0	0	0.32444	3	8579	8574;8579;8590		102.77	5.3636	1	302690			28287	1607	23178	23205	31545;31546;31547	31546					0.08439545936960258
LDIISEFILL	10	Unmodified	_LDIISEFILL_					0	0	0		ENST00000475860.1_1_2:242038724-242041688:-|nuORF;ENSG00000122085|ENST00000391980|MTERF4	ENST00000475860.1_1_2:242038724-242041688:-|nuORF	ENST00000475860.1_1_2:242038724-242041688:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.819091796875	2	588.34974	1174.68493	2.0486	0.0012053	2.3028	0.0013549	4.3514	0.0025601	588.3510658663984	120.41	0.69229	120.41	120.27	120.97	0					19	16	2	0	0	0	0.026752	1	13863	13863		35.618	6.4687	1	1114300			28288	3517	23179	23206	31548	31548					0.10457195656977092
LDIKNLKEF	9	Unmodified	_LDIKNLKEF_					0	0	0			REV__L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|180|3|sense	REV__L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|180|3|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	560.3241577148438	2	560.324057	1118.63356	2.1233	0.0011897	0.36767	0.00020601	2.491	0.0013958	560.3241783878202	138.32	0.81566	138.32	138.02	138.83	0					43	16	4	0	0	0	0.068524	1	16126	16126		108.09	3.3409	1	1854000	+		28289	28366	23180	23207	31549	31549					0.07898871682891695
LDIKRFDEP	9	Unmodified	_LDIKRFDEP_					0	0	0			REV__ENSG00000134744|ENST00000257177|TUT4	REV__ENSG00000134744|ENST00000257177|TUT4	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.8336181640625	2	566.803488	1131.59242	2.6821	0.0015202	1.0511	0.00059575	3.7332	0.002116	566.8040715395849	99.509	0.50076	99.509	99.236	99.736	0					24	11	3	0	0	0	0.027017	1	10988	10988		93.195	33.077	1	2030800	+		28290	19225	23181	23208	31550	31550					0.031891106434159155
LDILGDNAVSN	11	Unmodified	_LDILGDNAVSN_					0	0	0		ENSG00000188385|ENST00000684848|JAKMIP3	ENSG00000188385|ENST00000684848|JAKMIP3	ENSG00000188385|ENST00000684848|JAKMIP3	MULTI-MSMS	OvCa9_classI_Rep2	2	565.78564453125	2	565.788035	1129.56152	-0.38704	-0.00021898	-0.057876	-3.2745E-05	-0.44492	-0.00025173	565.7878905137007	94.337	2.1556	93.237	92.487	94.642	-1.0995					110	42	4	0	0	0	0.34475	1	8455	8455		65.157	1.6234	1	537310			28291	8471	23182	23209	31551	31551					0.0019191253854842216
LDILTARTL	9	Unmodified	_LDILTARTL_					0	0	0		ENST00000480001.5_1_3:25470222-25636040:+|nuORF	ENST00000480001.5_1_3:25470222-25636040:+|nuORF	ENST00000480001.5_1_3:25470222-25636040:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.79522705078125	2	508.310949	1014.60735	0.74681	0.00037961	-0.77067	-0.00039174	-0.023862	-1.2129E-05	508.3103938132572	127.39	0.84045	127.16	126.89	127.73	-0.2359					40	16	4	0	0	0	0.027462	1	12467	12467		26.693	0	1	96736			28292	12515	23183	23210	31552	31552					0.10062602511413843
LDILYQLR	8	Unmodified	_LDILYQLR_					0	0	0			REV__ENSG00000137547|ENST00000260102|MRPL15	REV__ENSG00000137547|ENST00000260102|MRPL15	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3046264648438	2	517.305667	1032.59678	0.50544	0.00026147	-0.58019	-0.00030013	-0.074744	-3.8665E-05	517.3051776406942	124.31	0.98633	124.07	123.68	124.67	-0.23193					45	19	3	0	0	0	0.72896	1	12083	12083		37.159	1.5408	1	148560	+		28293	19461	23184	23211	31553	31553					0.08178619856971636
LDINDNNP	8	Unmodified	_LDINDNNP_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4;FAT4|p.I3243Efs*10|1|0.29|ENSG00000196159|chr4:125450742-125450743|-/GAAAA|frameshift_variant;FAT4|p.D3244Lfs*13|1|0.23|ENSG00000196159|chr4:125450744-125450745|-/ACTTACTGTTTCGGCAA|frameshift_variant	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.79852294921875	2	457.714339	913.414125	-0.42	-0.00019224	-0.85311	-0.00039048	-1.2731	-0.00058272	457.7121173835171	106.07	0.25854	104.05	103.9	104.16	-2.0161					7	4	2	0	0	0	0.028476	1	9633	9633		45.952	0	1	3419.5			28294	8571	23185	23212	31554	31554					-0.04604559275617248
LDINEMVRT	9	Unmodified	_LDINEMVRT_					0	0	0		ENSG00000100014|ENST00000314328|SPECC1L;nc|ENSG00000100014|Q69YQ0-2|SPECC1L;ENST00000472799.1_1_22:24808300-24810588:+|nuORF	ENSG00000100014|ENST00000314328|SPECC1L	ENSG00000100014|ENST00000314328|SPECC1L	MULTI-SECPEP	OvCa9_classI_Rep2	2	544.8209228515625	2	545.781699	1089.54884	-0.95331	-0.0005203	0.24891	0.00013585	-0.70439	-0.00038445	545.7819401501786	103.34	0.83885	102.66	102.43	103.27	-0.68459					31	16	3	0	0	0	0.027461	1	9575	9575		58.782	19.529	1	34426			28295	1993	23186	23213	31555	31555					0.007651778746321725
LDISGDFKDQ	10	Unmodified	_LDISGDFKDQ_					0	0	0			REV__nc|ENSG00000189056|P78509-3|RELN	REV__nc|ENSG00000189056|P78509-3|RELN	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.8115844726562	2	569.274761	1136.53497	1.8586	0.0010581	-4.3663	-0.0024857	-2.5077	-0.0014276	569.2723060678171	136.07	0.33037	136.07	135.88	136.21	0					11	6	2	0	0	0	0.02663	1	15847	15847		60.118	6.7668	1	38572	+		28296	22758	23187	23214	31556	31556					-0.02783776352816858
LDISIIQPE	9	Unmodified	_LDISIIQPE_					0	0	0			REV__nc|ENSG00000189056|P78509-3|RELN	REV__nc|ENSG00000189056|P78509-3|RELN	MULTI-MSMS	OvCa99_classI_Rep5	1	514.78955078125	2	514.28714	1026.55973	-0.068276	-3.5113E-05	3.5407	0.0018209	3.4724	0.0017858	514.2890122350611	101.71	0.89513	101.71	101.4	102.29	0					46	20	3	0	0	0	0.22621	1	11354	11354		71.877	2.2498	1	1628000	+		28297	22758	23188	23215	31557	31557					0.047509035205848704
LDISKEETP	9	Unmodified	_LDISKEETP_					0	0	0		ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7650146484375	2	516.266404	1030.51826	-1.2043	-0.00062175	-1.3781	-0.00071145	-2.5824	-0.0013332	516.2657834547875	54.866	1.0768	51.619	50.979	52.055	-3.2474					31	20	2	0	0	0	0.027462	1	3431	3431		37.159	0	1	95543			28298	2836	23189	23216	31558	31558					0.004217227612343777
LDISQRKLY	9	Unmodified	_LDISQRKLY_					0	0	0		ENSG00000171295|ENST00000304060|ZNF440;nc|ENSG00000198429|Q9UC07-2|ZNF69;ENSG00000197054|ENST00000358987|ZNF763;nc|ENSG00000197054|Q0D2J5-2|ZNF763;ENSG00000198429|ENST00000429654|ZNF69	ENSG00000171295|ENST00000304060|ZNF440	ENSG00000171295|ENST00000304060|ZNF440	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.8115844726562	2	568.327131	1134.63971	1.8164	0.0010323	3.6381	0.0020676	5.4545	0.0030999	568.3291707251518	135.78	0.6105	135.78	135.46	136.07	0					33	12	3	0	0	0	0.027462	1	15847	15847		29.15	3.6994	1	213750			28299	7189	23190	23217	31559	31559					0.07777389914440391
LDITDRLCFAI	11	Unmodified	_LDITDRLCFAI_					0	0	0		nc|ENSG00000081377|O60729-2|CDC14B;nc|ENSG00000081377|O60729-3|CDC14B;nc|ENSG00000081377|O60729-4|CDC14B;ENSG00000081377|ENST00000375241|CDC14B	nc|ENSG00000081377|O60729-2|CDC14B	nc|ENSG00000081377|O60729-2|CDC14B	MULTI-SECPEP	OvCa99_classI_Rep5	1	427.2451171875	3	427.228679	1278.66421	-0.10204	-4.3595E-05	3.8604	0.0016493	3.7584	0.0016057	427.2302376443161	47.65	0.91331	47.65	47.379	48.292	0					49	20	4	0	0	0	0.025239	1	3452	3452		50.034	32.867	1	962000			28300	1660	23191	23218	31560	31560					0.03602282005658708
LDIVITGKYK	10	Unmodified	_LDIVITGKYK_					0	0	0		nc|ENSG00000104970|Q9H7L2|KIR3DX1	nc|ENSG00000104970|Q9H7L2|KIR3DX1	nc|ENSG00000104970|Q9H7L2|KIR3DX1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.3455200195312	2	575.347532	1148.68051	-4.8722	-0.0028032	1.3843	0.00079645	-3.488	-0.0020068	575.3482857575835	154.87	1.1278	154.64	154.34	155.47	-0.22696					59	30	3	0	0	0	0.82648	1	15781	15781		15.642	0	1	84487			28301	14938	23192	23219	31561	31561					0.1121173123403878
LDIVWKTN	8	Unmodified	_LDIVWKTN_					0	0	0		nc|ENSG00000113597|A5PLN9-7|TRAPPC13;ENST00000512009.5_1_5:64920875-64956772:+|nuORF;nc|ENSG00000113597|A5PLN9-2|TRAPPC13;nc|ENSG00000113597|A5PLN9-4|TRAPPC13;ENSG00000113597|ENST00000399438|TRAPPC13;nc|ENSG00000113597|A5PLN9-5|TRAPPC13	nc|ENSG00000113597|A5PLN9-7|TRAPPC13	nc|ENSG00000113597|A5PLN9-7|TRAPPC13	MULTI-MSMS	OvCa99_classI_Rep5	1	494.77825927734375	2	494.776742	987.538931	1.4216	0.00070338	0.81403	0.00040276	2.2356	0.0011061	494.7770725387936	138.33	0.53064	138.33	138.06	138.59	0					18	10	2	0	0	0	0.66992	1	16139	16139		49.442	5.3247	1	98623			28302	12990	23193	23220	31562	31562					0.044663579315511015
LDKAQDLFGD	10	Unmodified	_LDKAQDLFGD_					0	0	0		ENSG00000163975|ENST00000296350|MELTF	ENSG00000163975|ENST00000296350|MELTF	ENSG00000163975|ENST00000296350|MELTF	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.7760620117188	2	561.277303	1120.54005	3.0038	0.0016859	-2.3001	-0.001291	0.70368	0.00039496	561.2760021926787	121.73	0.5116	121.73	121.38	121.9	0					20	10	3	0	0	0	0.026782	1	14008	14008		30.318	0	1	225220			28303	6391	23194	23221	31563	31563					-0.015394724901852896
LDKATLIWNG	10	Unmodified	_LDKATLIWNG_					0	0	0		nc|ENSG00000101888|Q9NPJ8-4|NXT2;ENSG00000101888|ENST00000372106|NXT2;nc|ENSG00000101888|Q9NPJ8-3|NXT2;chrX:109535977-109536937|243|44.07|0.39|6.81|+|ENST00000218004|NXT2,NXT2	nc|ENSG00000101888|Q9NPJ8-4|NXT2	nc|ENSG00000101888|Q9NPJ8-4|NXT2	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.802001953125	2	565.813856	1129.61316	-1.6099	-0.00091092	3.7767	0.0021369	2.1668	0.001226	565.815569228727	104.36	0.63668	104.36	103.98	104.62	0					32	14	3	0	0	0	0.026968	1	11728	11728		22.58	0	1	384870			28304	560	23195	23222	31564	31564					0.05353701023113899
LDKATVLL	8	Unmodified	_LDKATVLL_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.7765197753906	2	436.776211	871.537869	0.6505	0.00028412	-0.41078	-0.00017942	0.23972	0.00010471	436.77589068903694	90.162	1.4275	87.587	87.248	88.676	-2.575					57	27	3	0	0	0	0.29515	1	7762	7762		108.09	8.7125	1	172670			28305	5511	23196	23223	31565	31565					0.09696143562666748
LDKATVLL	8	Unmodified	_LDKATVLL_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	436.776211	871.537869	2.3226	0.0010144	-1.9665	-0.00085893	0.35605	0.00015551	436.77520789525346	88.971	1.4831	87.604	87.231	88.715	-1.3676	0.058623	-0.0010935	NaN	108.09	62	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97027			28306	5511	23196	23223							0.09696143562666748
LDKATVLL	8	Unmodified	_LDKATVLL_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	436.776211	871.537869	-0.10339	-4.516E-05	0.29129	0.00012723	0.1879	8.2068E-05	436.7762167716205	89.525	1.829	87.444	87.094	88.923	-2.0805	-0.1009	0.00087882	NaN	108.09	66	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133320			28307	5511	23196	23223							0.09696143562666748
LDKCIGCHT	9	Unmodified	_LDKCIGCHT_					0	0	0		tr|A0A553SSL3|A0A553SSL3_NIACINitratereductasesubunitbetaOS=NialliacirculansOX=1397GN=narHPE=4SV=1	tr|A0A553SSL3|A0A553SSL3_NIACINitratereductasesubunitbetaOS=NialliacirculansOX=1397GN=narHPE=4SV=1	tr|A0A553SSL3|A0A553SSL3_NIACINitratereductasesubunitbetaOS=NialliacirculansOX=1397GN=narHPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	494.295654296875	2	495.230787	988.447022	-1.077	-0.00053338	-1.9406	-0.00096102	-3.0176	-0.0014944	495.2298728093651	91.422	0.86156	89.398	89.079	89.941	-2.0241					27	16	3	0	0	0	0.027441	1	5740	5740		19.104	0	1	23987			28308	34388	23197	23224	31566	31566					-0.047663917487852814
LDKDPPVF	8	Unmodified	_LDKDPPVF_					0	0	0			REV__PDPR|p.H811Mfs*23|1|0.02|ENSG00000090857|chr16:70156669-70156670|-/ATGGATTT|frameshift_variant	REV__PDPR|p.H811Mfs*23|1|0.02|ENSG00000090857|chr16:70156669-70156670|-/ATGGATTT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.2800598144531	2	465.750193	929.485833	-0.42936	-0.00019997	1.4667	0.0006831	1.0373	0.00048313	465.75094815580064	35.174	0.70206	35.174	34.864	35.566	0					21	14	2	0	0	0	0.028476	1	1763	1763		25.45	0	1	35072	+		28309	17234	23198	23225	31567	31567					0.01826980148905477
LDKEKAAELI	10	Unmodified	_LDKEKAAELI_					0	0	0		tr|A0A553SU58|A0A553SU58_NIACIDUF2089domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06405PE=4SV=1	tr|A0A553SU58|A0A553SU58_NIACIDUF2089domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06405PE=4SV=1	tr|A0A553SU58|A0A553SU58_NIACIDUF2089domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06405PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.3097534179688	2	565.326796	1128.63904	2.5706	0.0014532	3.7313	0.0021094	6.3019	0.0035626	565.3280026406727	96.643	0.29321	96.643	96.459	96.753	0					13	6	3	0	0	0	0.02706	1	10594	10594		30.318	6.795	1	474630			28310	34570	23199	23226	31568	31568					0.07986550474697651
LDKERQVLV	9	Unmodified	_LDKERQVLV_					0	0	0			REV__ENSG00000170498|ENST00000367194|KISS1	REV__ENSG00000170498|ENST00000367194|KISS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.3277587890625	2	550.327131	1098.63971	0.71282	0.00039229	-2.7777	-0.0015287	-2.0649	-0.0011364	550.3256260191897	86.705	1.5914	84.078	83.613	85.204	-2.6269					98	31	4	0	0	0	0.44568	1	7376	7376		47.657	1.2006	1	3279500	+		28311	21543	23200	23227	31569	31569					0.09433389914420331
LDKGRPLRTR	10	Unmodified	_LDKGRPLRTR_					0	0	0			REV__ENSG00000118564|ENST00000341285|FBXL5	REV__ENSG00000118564|ENST00000341285|FBXL5	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3695068359375	2	606.370195	1210.72584	-2.264	-0.0013728	1.1871	0.00071982	-1.0769	-0.00065302	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.818	1	12614	12614		16.717	2.5803	1	205770	+		28312	18406	23201	23228	31570	31570					0.12890394539772387
LDKGRPLRTR	10	Unmodified	_LDKGRPLRTR_					0	0	0			REV__ENSG00000118564|ENST00000341285|FBXL5	REV__ENSG00000118564|ENST00000341285|FBXL5	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3705444335938	2	606.370195	1210.72584	-2.0217	-0.0012259	1.0061	0.00061009	-1.0156	-0.00061581	606.3706888805716	149.57	2.6994	148.14	147.52	150.22	-1.4344					165	58	4	0	0	0	0.72142	1	14899	14899		28.081	7.1346	1	304910	+		28313	18406	23201	23228	31571	31571					0.12890394539772387
LDKLEDILE	9	Unmodified	_LDKLEDILE_					0	0	0			REV__tr|A0A7D6ZKB1|A0A7D6ZKB1_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06715PE=4SV=1	REV__tr|A0A7D6ZKB1|A0A7D6ZKB1_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06715PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	544.2987670898438	2	544.297704	1086.58086	0.37477	0.00020399	4.2002	0.0022862	4.575	0.0024901	544.299673732713	92.131	1.7141	90.896	90.272	91.987	-1.2355					65	23	4	0	0	0	0.13504	1	8208	8208		87.696	5.4559	1	540920	+		28314	32104	23202	23229	31572	31572					0.04102868829431827
LDKLEKLAE	9	Unmodified	_LDKLEKLAE_					0	0	0		nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.8099365234375	2	529.808239	1057.60193	-0.58449	-0.00030967	-1.5012	-0.00079536	-2.0857	-0.001105	529.807658457611	104.6	3.6666	104.6	104.15	107.82	0					240	84	6	0	0	0	0.049969	1	11788	11788		118.74	8.6232	1	177490000			28315	4796	23203	23230	31573	31573					0.0754287892893899
LDKLRSDF	8	Unmodified	_LDKLRSDF_					0	0	0			REV__ENSG00000205359|ENST00000506729|SLCO6A1	REV__ENSG00000205359|ENST00000506729|SLCO6A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.78973388671875	2	497.271824	992.529095	2.3755	0.0011813	-0.40868	-0.00020323	1.9668	0.00097804	497.27115085521314	91.69	0.41843	91.69	91.502	91.92	0					19	9	3	0	0	0	0.028476	1	9893	9893		31.955	0	1	686010	+		28316	23213	23204	23231	31574	31574					0.03253169926188093
LDKMQLKLL	9	Unmodified	_LDKMQLKLL_					0	0	0		tr|A0A7D6VWB6|A0A7D6VWB6_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=bglXPE=3SV=1	tr|A0A7D6VWB6|A0A7D6VWB6_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=bglXPE=3SV=1	tr|A0A7D6VWB6|A0A7D6VWB6_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=bglXPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.7883911132812	2	551.338652	1100.66275	0.28447	0.00015684	-3.9369	-0.0021705	-3.6524	-0.0020137	551.3364117222499	111.84	0.94757	110.33	110	110.95	-1.5111					36	17	3	0	0	0	0.027418	1	10323	10323		32.812	0	1	51175			28317	35245	23205	23232	31575	31575					0.11644692707523063
LDKPIETKE	9	Unmodified	_LDKPIETKE_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	OvCa99_classI_Rep5	1	536.80029296875	2	536.797872	1071.58119	1.8376	0.00098641	-0.48425	-0.00025995	1.3533	0.00072647	536.7975577786453	106.78	1.0256	106.78	106.54	107.56	0					61	23	4	0	0	0	0.1243	1	12011	12011		90.601	0	1	11763000	+		28318	21918	23206	23233	31576	31576					0.04826288549293167
LDKRLPLA	8	Unmodified	_LDKRLPLA_					0	0	0			REV__TMOD3|p.F5L|1|0.13|ENSG00000138594|chr15:51862899-51862899|C/A|missense_variant	REV__TMOD3|p.F5L|1|0.13|ENSG00000138594|chr15:51862899-51862899|C/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.2853088378906	2	463.295102	924.575651	-0.53828	-0.00024938	0.73985	0.00034277	0.20157	9.3385E-05	463.2954313064334	96.198	0.56036	93.773	93.609	94.169	-2.4256					12	10	2	0	0	0	0.028476	1	8510	8510		31.955	7.7521	1	16343	+		28319	29516	23207	23234	31577	31577					0.11034654548132039
LDKVKEMGS	9	Unmodified	_LDKVKEMGS_					0	0	0		ENSG00000117501|ENST00000367759|MROH9;MROH9|p.I346Rfs*9|1|0.37|ENSG00000117501|chr1:170992167-170992194|TCTGATACAGATGTGGAAGGCGGCATGT/-|frameshift_variant;nc|ENSG00000117501|Q5TGP6|MROH9	ENSG00000117501|ENST00000367759|MROH9	ENSG00000117501|ENST00000367759|MROH9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	504.27923583984375	2	503.765517	1005.51648	-0.70084	-0.00035306	0.52531	0.00026463	-0.17553	-8.8427E-05	503.76548788403915	51.945	1.715	48.772	47.771	49.486	-3.1734					51	33	3	0	0	0	0.027453	1	2979	2979		54.776	3.4409	1	135330			28320	3259	23208	23235	31578	31578					0.013943904716597899
LDKVPEDVQ	9	Unmodified	_LDKVPEDVQ_					0	0	0		ENSG00000213822|ENST00000396477|CEACAM18;CEACAM18|p.N95Kfs*14|1|0.74|ENSG00000213822|chr19:51480564-51480565|AC/-|frameshift_variant	ENSG00000213822|ENST00000396477|CEACAM18	ENSG00000213822|ENST00000396477|CEACAM18	MULTI-MSMS	OvCa99_classI_Rep5	1	521.7733154296875	2	521.774396	1041.53424	-1.4135	-0.00073754	-1.9351	-0.0010097	-3.3487	-0.0017472	521.7734200465217	27.117	0.84912	27.117	26.942	27.791	0					37	16	4	0	0	0	0.49652	1	766	766		42.864	2.0861	1	1980500			28321	9150	23209	23236	31579	31579					0.015134289981460824
LDKYEKFFR	9	Unmodified	_LDKYEKFFR_					0	0	0		ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	ENSG00000116285|ENST00000377482|ERRFI1	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.9082946777344	3	415.892396	1244.65536	-0.041879	-1.7417E-05	-3.4446	-0.0014326	-3.4865	-0.00145	416.2251957191858	42.276	0.21819	42.276	42.111	42.329	0					6	4	2	0	0	0	0.027462	1	2698	2698		10.104	0	1	35300			28322	3171	23210	23237	31580	31580					0.04281676431446613
LDLADYTYDL	10	Unmodified	_LDLADYTYDL_					0	0	0		nc|ENSG00000168487|P13497-3|BMP1;nc|ENSG00000168487|P13497-4|BMP1;nc|ENSG00000168487|P13497-5|BMP1;nc|ENSG00000168487|P13497-2|BMP1;BMP1|p.H749Qfs*3|1|0.09|ENSG00000168487|chr8:22206867-22206867|C/-|frameshift_variant;BMP1|p.H740Qfs*12|1|0.11|ENSG00000168487|chr8:22201915-22201915|C/-|frameshift_variant;nc|ENSG00000168487|P13497-6|BMP1;ENSG00000168487|ENST00000306385|BMP1	nc|ENSG00000168487|P13497-3|BMP1	nc|ENSG00000168487|P13497-3|BMP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	600.8021850585938	2	601.284794	1200.55504	2.3536	0.0014152	3.3891	0.0020378	5.7427	0.003453	601.7899192135651	137.55	0.38687	137.55	137.3	137.69	0					12	7	2	0	0	0	0.026956	1	16046	16046		14.137	3.2716	1	22423			28323	152	23211	23238	31581	31581					-0.03722025412844232
LDLAKKKHA	9	Unmodified	_LDLAKKKHA_					0	0	0		nc|ENSG00000115504|Q8NDI1|EHBP1;ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1	nc|ENSG00000115504|Q8NDI1|EHBP1	nc|ENSG00000115504|Q8NDI1|EHBP1	MULTI-MSMS	OvCa9_classI_Rep2	2	512.3185424804688	2	512.319109	1022.62366	-1.0601	-0.00054311	0.66174	0.00033902	-0.39836	-0.00020409	512.3193628969464	54.362	1.9918	51.548	51.075	53.067	-2.8139					110	39	4	0	0	0	0.37135	1	3708	3708		54.776	3.4409	1	832500			28324	14976	23212	23239	31582	31582					0.11325728468182206
LDLAKKKHA	9	Unmodified	_LDLAKKKHA_					0	0	0		nc|ENSG00000115504|Q8NDI1|EHBP1;ENSG00000115504|ENST00000431489|EHBP1;nc|ENSG00000115504|Q8NDI1-2|EHBP1	nc|ENSG00000115504|Q8NDI1|EHBP1	nc|ENSG00000115504|Q8NDI1|EHBP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.3203125	2	512.319109	1022.62366	-1.0918	-0.00055934	0.44728	0.00022915	-0.6445	-0.00033019	512.3192622301821	54.713	1.7342	51.465	51.132	52.866	-3.2474					92	33	4	0	0	0	0.2422	2	3423	3423;3449		69.628	6.2073	1	2084000			28325	14976	23212	23239	31583;31584	31583					0.11325728468182206
LDLEKLPEF	9	Unmodified	_LDLEKLPEF_					0	0	0		ENST00000564987.1_1_16:23541198-23555881:-|nuORF;ENSG00000103356|ENST00000449606|EARS2;nc|ENSG00000103356|Q5JPH6-2|EARS2	ENST00000564987.1_1_16:23541198-23555881:-|nuORF	ENST00000564987.1_1_16:23541198-23555881:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	552.3029174804688	2	552.30279	1102.59103	-0.82911	-0.00045792	-0.12485	-6.8957E-05	-0.95397	-0.00052688	552.3026423287465	102.49	3.7537	100.97	100.53	104.28	-1.5211					161	71	3	0	0	0	0.083631	1	7134	7134		101.6	0	1	4641500			28326	2311	23213	23240	31585	31585					0.043834765546762355
LDLEMQQFIE	10	Unmodified	_LDLEMQQFIE_					0	0	0			REV__tr|A0A7D6VZ95|A0A7D6VZ95_9CLOTCapsidproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19250PE=4SV=1	REV__tr|A0A7D6VZ95|A0A7D6VZ95_9CLOTCapsidproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19250PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	633.6626586914062	2	633.307746	1264.60094	2.0697	0.0013108	4.2016	0.0026609	6.2713	0.0039717	633.3102356669596	108.82	0.52324	108.82	108.67	109.19	0					18	11	2	0	0	0	0.026826	1	12325	12325		22.58	0	1	284130	+		28327	31834	23214	23241	31586	31586					-0.020777035022774726
LDLEPRTL	8	Unmodified	_LDLEPRTL_					0	0	0		tr|A0A7D6ZF15|A0A7D6ZF15_9CLOTN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16005PE=4SV=1	tr|A0A7D6ZF15|A0A7D6ZF15_9CLOTN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16005PE=4SV=1	tr|A0A7D6ZF15|A0A7D6ZF15_9CLOTN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16005PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.79833984375	2	478.7742	955.533846	0.00067545	3.2339E-07	0.023165	1.1091E-05	0.023841	1.1414E-05	478.77424406624175	60.587	0.54473	60.587	60.314	60.859	0					22	12	3	0	0	0	0.028476	1	5317	5317		42.396	0	1	738580			28328	35497	23215	23242	31587	31587					0.05430054068960999
LDLERELLE	9	Unmodified	_LDLERELLE_					0	0	0		ENSG00000186472|ENST00000333891|PCLO;nc|ENSG00000186472|Q9Y6V0-6|PCLO	ENSG00000186472|ENST00000333891|PCLO	ENSG00000186472|ENST00000333891|PCLO	MULTI-MSMS	OvCa9_classI_Rep2	2	565.3082275390625	2	565.308603	1128.60265	0.20207	0.00011423	-1.6397	-0.00092695	-1.4377	-0.00081272	565.3076159501649	96.83	2.3607	95.871	95.481	97.841	-0.95857					161	47	5	0	0	0	0.043101	2	8782	8782;8788		124.08	13.893	1	3204400			28329	8338	23216	23243	31588;31589	31588					0.04349673578008151
LDLERELLE	9	Unmodified	_LDLERELLE_					0	0	0		ENSG00000186472|ENST00000333891|PCLO;nc|ENSG00000186472|Q9Y6V0-6|PCLO	ENSG00000186472|ENST00000333891|PCLO	ENSG00000186472|ENST00000333891|PCLO	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.3092041015625	2	565.308603	1128.60265	1.1361	0.00064226	-2.3807	-0.0013458	-1.2445	-0.00070355	565.3072068648027	98.126	2.7067	95.747	95.368	98.074	-2.3786					164	52	5	0	0	0	0.046778	1	8769	8769		120.87	5.4095	1	4552600			28330	8338	23216	23243	31590	31590					0.04349673578008151
LDLFIKSN	8	Unmodified	_LDLFIKSN_					0	0	0			REV__ENSG00000058056|ENST00000263966|USP13	REV__ENSG00000058056|ENST00000263966|USP13	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.31256103515625	2	475.271293	948.528032	0.24223	0.00011512	-0.8798	-0.00041814	-0.63757	-0.00030302	475.2706480594015	104.99	0.45798	102.87	102.64	103.1	-2.1192					15	8	2	0	0	0	0.028476	1	9494	9494		40.778	14.085	1	29126	+		28331	16723	23217	23244	31591	31591					0.05170955557275647
LDLFMDSLH	9	Unmodified	_LDLFMDSLH_					0	0	0			REV__ENSG00000066651|ENST00000334379|TRMT11	REV__ENSG00000066651|ENST00000334379|TRMT11	MULTI-MSMS	OvCa99_classI_Rep5	1	546.2694091796875	2	545.765517	1089.51648	-0.37661	-0.00020554	-2.8841	-0.001574	-3.2607	-0.0017796	545.7634424748566	58.798	0.71637	58.798	58.403	59.12	0					38	17	3	0	0	0	0.56889	1	5048	5048		35.618	1.4457	1	2088900	+		28332	16820	23218	23245	31592	31592					-0.02469609528361616
LDLGSCLDVL	10	Unmodified	_LDLGSCLDVL_					0	0	0		ENSG00000130487|ENST00000648057|KLHDC7B;nc|ENSG00000130487|Q96G42|KLHDC7B	ENSG00000130487|ENST00000648057|KLHDC7B	ENSG00000130487|ENST00000648057|KLHDC7B	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.8410034179688	2	524.273175	1046.5318	2.2364	0.0011725	-1.7207	-0.0009021	0.51571	0.00027037	524.2718307083745	99.384	0.69998	99.384	99.036	99.736	0					28	16	3	0	0	0	0.027255	1	10972	10972		111.65	29.408	1	762410			28333	3989	23219	23246	31593	31593					0.01039257268826077
LDLHELNTL	9	Unmodified	_LDLHELNTL_					0	0	0			REV__nc|ENSG00000136869|O00206-2|TLR4	REV__nc|ENSG00000136869|O00206-2|TLR4	MULTI-MSMS	OvCa99_classI_Rep5	1	534.29150390625	2	534.290214	1066.56587	1.9384	0.0010357	0.23639	0.0001263	2.1748	0.001162	534.2902066276332	122.34	1.337	122.34	122.04	123.37	0					82	28	4	0	0	0	0.2784	1	14071	14071		65.465	3.358	1	3180200	+		28334	19414	23220	23247	31594	31594					0.035254217521242026
LDLKDDDIE	9	Unmodified	_LDLKDDDIE_					0	0	0		tr|A0A7D6ZFS1|A0A7D6ZFS1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16215PE=4SV=1	tr|A0A7D6ZFS1|A0A7D6ZFS1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16215PE=4SV=1	tr|A0A7D6ZFS1|A0A7D6ZFS1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16215PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.8438720703125	2	538.261319	1074.50808	-0.45592	-0.00024541	0.37163	0.00020003	-0.084296	-4.5373E-05	538.2613283355039	54.87	0.55782	54.87	54.675	55.233	0					16	12	2	0	0	0	0.027459	1	4462	4462		44.377	0	1	1136900			28335	35522	23221	23248	31595	31595					-0.026188849640220724
LDLKGVRLGE	10	Unmodified	_LDLKGVRLGE_					0	0	0		ENST00000504241.1_1_5:180622168-180622936:-|nuORF;nc|ENSG00000146054|Q9C029-3|TRIM7;nc|ENSG00000146054|Q9C029-4|TRIM7;ENSG00000146054|ENST00000274773|TRIM7	ENST00000504241.1_1_5:180622168-180622936:-|nuORF	ENST00000504241.1_1_5:180622168-180622936:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.807373046875	2	550.327131	1098.63971	-0.37785	-0.00020794	-0.098261	-5.4076E-05	-0.47611	-0.00026202	550.3269593038539	68.991	1.1254	65.501	65.163	66.288	-3.4902					50	22	3	0	0	0	0.026826	1	5195	5195		36.447	7.2972	1	191020			28336	5261	23222	23249	31596	31596					0.09433389914443069
LDLKGVRLGE	10	Unmodified	_LDLKGVRLGE_					0	0	0		ENST00000504241.1_1_5:180622168-180622936:-|nuORF;nc|ENSG00000146054|Q9C029-3|TRIM7;nc|ENSG00000146054|Q9C029-4|TRIM7;ENSG00000146054|ENST00000274773|TRIM7	ENST00000504241.1_1_5:180622168-180622936:-|nuORF	ENST00000504241.1_1_5:180622168-180622936:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	550.327131	1098.63971	-0.74772	-0.00041149	0.68325	0.00037601	-0.064477	-3.5483E-05	550.3275081377941	68.063	1.4833	65.402	64.892	66.375	-2.661	-0.049651	0.00060122	NaN	22.58	58	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146590			28337	5261	23222	23249							0.09433389914443069
LDLKKIFFL	9	Unmodified	_LDLKKIFFL_					0	0	0			REV__ENSG00000112659|ENST00000252050|CUL9;REV__ENST00000515773.5_1_6:43152048-43164205:+|nuORF	REV__ENSG00000112659|ENST00000252050|CUL9	MULTI-MSMS	OvCa99_classI_Rep5	1	568.8587036132812	2	568.857535	1135.70052	1.0597	0.00060279	0.66106	0.00037605	1.7207	0.00097884	568.8577347609626	131.55	1.6957	131.55	131.25	132.94	0					89	35	4	0	0	0	0.35444	1	15342	15342		56.721	5.3856	1	1323300	+		28338	18111;27007	23223	23250	31597	31597					0.1380952696465556
LDLLQAIQI	9	Unmodified	_LDLLQAIQI_					0	0	0			REV__nc|ENSG00000175305|O96020-2|CCNE2	REV__nc|ENSG00000175305|O96020-2|CCNE2	MULTI-MSMS	OvCa9_classI_Rep2	2	513.8126831054688	2	513.813325	1025.6121	0.034126	1.7535E-05	-0.62139	-0.00031928	-0.58727	-0.00030175	513.812915073237	95.614	2.7183	94.586	93.824	96.542	-1.0281					131	54	4	0	0	0	0.059253	1	8602	8602		113.41	0	1	975360	+		28339	21890	23224	23251	31598	31598					0.10031486654179389
LDLLSPEYVV	10	Unmodified	_LDLLSPEYVV_					0	0	0		tr|A0A7D6VZB4|A0A7D6VZB4_9CLOTHDODdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18985PE=4SV=1	tr|A0A7D6VZB4|A0A7D6VZB4_9CLOTHDODdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18985PE=4SV=1	tr|A0A7D6VZB4|A0A7D6VZB4_9CLOTHDODdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18985PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	575.2974243164062	2	574.315897	1146.61724	-0.92317	-0.00053019	-2.9968	-0.0017211	-3.92	-0.0022513	574.3161014665753	97.697	0.2966	96.738	96.562	96.859	-0.95857					8	5	2	0	0	0	0.026553	1	8854	8854		56.721	15.943	1	11421			28340	35356	23225	23252	31599	31599					0.04979745726132023
LDLLVARPIYH	11	Unmodified	_LDLLVARPIYH_					0	0	0			REV__ENSG00000037042|ENST00000251412|TUBG2	REV__ENSG00000037042|ENST00000251412|TUBG2	MULTI-MSMS	OvCa9_classI_Rep2	2	437.25665283203125	3	437.259079	1308.75541	-3.525	-0.0015413	-0.35709	-0.00015614	-3.8821	-0.0016975	437.25900137272055	155.13	2.0506	154.9	154.06	156.11	-0.22697					105	58	2	0	0	0	0.72516	1	15784	15784		13.508	0	1	24211	+		28341	16610	23226	23253	31600	31600					0.11337913765282792
LDLMPLEPS	9	Unmodified	_LDLMPLEPS_					0	0	0		ENST00000439362.5_1_2:111965809-111965902:-|nuORF	ENST00000439362.5_1_2:111965809-111965902:-|nuORF	ENST00000439362.5_1_2:111965809-111965902:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7654724121094	2	507.762443	1013.51033	-0.74501	-0.00037829	3.7583	0.0019083	3.0132	0.00153	507.7640165755125	63.315	2.1825	59.84	58.797	60.98	-3.475					83	34	4	0	0	0	0.22961	2	4448	4437;4448		71.296	9.7792	1	871910			28342	11913	23227	23254	31601;31602	31602					0.004118722401130981
LDLNVQTNQI	10	Unmodified	_LDLNVQTNQI_					0	0	0			REV__nc|ENSG00000165495|Q96KN3-2|PKNOX2	REV__nc|ENSG00000165495|Q96KN3-2|PKNOX2	MULTI-MSMS	OvCa9_classI_Rep2	2	579.31005859375	2	579.311677	1156.6088	-0.99433	-0.00057603	0.45682	0.00026464	-0.53751	-0.00031139	579.3119014879636	98.774	1.8386	97.881	97.41	99.248	-0.89306					101	36	5	0	0	0	0.34811	1	8986	8986		75.043	3.1658	1	886160	+		28343	21094	23228	23255	31603	31603					0.036761918094953216
LDLNYKTKY	9	Unmodified	_LDLNYKTKY_					0	0	0			REV__ENSG00000100697|ENST00000343455|DICER1	REV__ENSG00000100697|ENST00000343455|DICER1	MULTI-MSMS	OvCa9_classI_Rep3	3	579.3114624023438	2	579.313689	1156.61282	-1.3424	-0.00077765	-2.7361	-0.001585	-4.0784	-0.0023627	579.3120320052601	99.586	2.05	97.901	97.474	99.524	-1.685					95	40	4	0	0	0	0.3076	1	6733	6733		62.107	1.9892	1	1018700	+		28344	17445	23229	23256	31604	31604					0.040782813032365084
LDLQGEDELY	10	Unmodified	_LDLQGEDELY_					0	0	0			REV__nc|ENSG00000160953|Q2TAK8-2|PWWP3A	REV__nc|ENSG00000160953|Q2TAK8-2|PWWP3A	MULTI-SECPEP	OvCa99_classI_Rep5	1	597.8493041992188	2	597.779876	1193.5452	2.2262	0.0013308	1.8927	0.0011314	4.1189	0.0024622	598.2829528607364	85.66	0.65942	85.66	85.334	85.994	0					36	15	3	0	0	0	0.026624	1	8987	8987		63.534	10.182	1	542980	+		28345	20682	23230	23257	31605	31605					-0.043832134182366644
LDLQGHLDAA	10	Unmodified	_LDLQGHLDAA_					0	0	0		RAB11FIP5-UBE2E3|1|fusion;ENST00000493523.2_1_2:73302651-73316730:-|nuORF;nc|ENSG00000135631|Q9BXF6|RAB11FIP5;RAB11FIP5|p.Q575Pfs*30|1|0.03|ENSG00000135631|chr2:73076027-73076028|-/G|frameshift_variant;ENSG00000135631|ENST00000486777|RAB11FIP5	RAB11FIP5-UBE2E3|1|fusion;RAB11FIP5|p.Q575Pfs*30|1|0.03|ENSG00000135631|chr2:73076027-73076028|-/G|frameshift_variant	RAB11FIP5-UBE2E3|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	526.7716064453125	2	526.772188	1051.52982	0.53416	0.00028138	-1.461	-0.00076962	-0.92685	-0.00048824	526.7712273408915	151.81	1.3029	151.81	151.25	152.55	0					61	27	4	0	0	0	0.61634	1	17778	17778		40.058	3.6114	1	373300			28346	15536;4394	23231	23258	31606	31606					0.006119645752278302
LDLQLWLF	8	Unmodified	_LDLQLWLF_					0	0	0			REV__nc|ENSG00000211788|A0A0B4J241|TRAV13-1	REV__nc|ENSG00000211788|A0A0B4J241|TRAV13-1	MULTI-SECPEP	OvCa9_classI_Rep3	3	523.8406372070312	2	524.29731	1046.58007	-0.50776	-0.00026622	-3.1351	-0.0016437	-3.6429	-0.00191	524.2953792065387	103.05	0.57623	101.53	101.26	101.83	-1.5211					19	10	2	0	0	0	0.028476	1	7088	7088		54.765	0	1	58468	+		28347	29116	23232	23259	31607	31607					0.05864118971044263
LDLQNKLPLAR	11	Unmodified	_LDLQNKLPLAR_					0	0	0		ENSG00000064932|ENST00000361757|SBNO2;nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENST00000592222.5_1_19:1115804-1132196:-|nuORF	ENSG00000064932|ENST00000361757|SBNO2	ENSG00000064932|ENST00000361757|SBNO2	MULTI-MSMS	OvCa9_classI_Rep3	3	640.8909912109375	2	640.887887	1279.76122	-0.17161	-0.00010998	3.4108	0.002186	3.2392	0.002076	640.8899625944715	132.12	1.093	131	130.64	131.73	-1.1249					68	21	4	0	0	0	0.69808	1	10583	10583		30.318	1.1477	1	271940			28348	1308	23233	23260	31608	31608					0.13253012276936715
LDLRDGPLV	9	Unmodified	_LDLRDGPLV_					0	0	0			REV__tr|A0A7D7A672|A0A7D7A672_9CLOT3-hydroxyacyl-[acyl-carrier-protein]dehydrataseFabZOS=ClostridiumintestinaleOX=36845GN=fabZPE=3SV=1	REV__tr|A0A7D7A672|A0A7D7A672_9CLOT3-hydroxyacyl-[acyl-carrier-protein]dehydrataseFabZOS=ClostridiumintestinaleOX=36845GN=fabZPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	499.2883605957031	2	499.287474	996.560395	0.0027377	1.3669E-06	-0.79579	-0.00039733	-0.79305	-0.00039596	499.28710705090845	79.766	2.0701	77.426	76.61	78.68	-2.3399					104	40	4	0	0	0	0.1804	1	4326	4326		79.713	5.4575	1	2058500	+		28349	32654	23234	23261	31609	31609					0.06197742960284813
LDLRSIPEL	9	Unmodified	_LDLRSIPEL_					0	0	0			REV__HDAC9|p.P23R|1|0.05|ENSG00000048052|chr7:18585326-18585326|C/G|missense_variant	REV__HDAC9|p.P23R|1|0.05|ENSG00000048052|chr7:18585326-18585326|C/G|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	528.3082885742188	2	528.308406	1054.60226	2.5062	0.001324	1.1301	0.00059704	3.6363	0.0019211	528.308738306785	94.213	0.72575	94.213	93.964	94.69	0					46	16	4	0	0	0	0.060996	1	10228	10228		112.41	27.495	1	5715700	+		28350	28196	23235	23262	31610	31610					0.07714298648784279
LDLRSIPEL	9	Unmodified	_LDLRSIPEL_					0	0	0			REV__HDAC9|p.P23R|1|0.05|ENSG00000048052|chr7:18585326-18585326|C/G|missense_variant	REV__HDAC9|p.P23R|1|0.05|ENSG00000048052|chr7:18585326-18585326|C/G|missense_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	528.308406	1054.60226	0.31783	0.00016791	0.15101	7.9778E-05	0.46884	0.00024769	528.3082469485184	96.824	1.2532	94.398	94.118	95.371	-2.4256	0.041079	-0.00065179	NaN	112.41	76	24	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	666590	+		28351	28196	23235	23262							0.07714298648784279
LDLRVPLHQ	9	Unmodified	_LDLRVPLHQ_					0	0	0		ENST00000470335.1_1_22:20838156-20850080:-|nuORF	ENST00000470335.1_1_22:20838156-20850080:-|nuORF	ENST00000470335.1_1_22:20838156-20850080:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.8240356445312	2	545.822015	1089.62948	0.91688	0.00050046	-1.874	-0.0010229	-0.95709	-0.0005224	545.8213801996834	85.8	1.7749	83.154	82.755	84.53	-2.6463					94	35	6	0	0	0	0.44568	1	7231	7231		47.657	1.6851	1	631300			28352	12363	23236	23263	31611	31611					0.08824826979844147
LDLSELILV	9	Unmodified	_LDLSELILV_					0	0	0		nc|ENSG00000148053|Q16620|NTRK2;ENSG00000148053|ENST00000277120|NTRK2;nc|ENSG00000148053|Q16620-2|NTRK2;nc|ENSG00000148053|Q16620-3|NTRK2;nc|ENSG00000148053|Q16620-5|NTRK2;nc|ENSG00000148053|Q16620-6|NTRK2	nc|ENSG00000148053|Q16620|NTRK2	nc|ENSG00000148053|Q16620|NTRK2	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.30322265625	2	507.807708	1013.60086	-0.96851	-0.00049182	2.5265	0.001283	1.558	0.00079116	507.81199809153236	97.179	3.3265	95.419	94.897	98.223	-1.7595					117	64	5	0	0	0	0.027433	1	6494	6494		60.972	0	1	1877500			28353	5384	23237	23264	31612	31612					0.09460664560049281
LDLSFNGVITM	11	Unmodified	_LDLSFNGVITM_					0	0	0		nc|ENSG00000136869|O00206-2|TLR4;ENSG00000136869|ENST00000355622|TLR4;TLR4|p.Q578Rfs*3|1|0.03|ENSG00000136869|chr9:117713860-117713861|-/G|frameshift_variant;nc|ENSG00000136869|O00206-3|TLR4	nc|ENSG00000136869|O00206-2|TLR4	nc|ENSG00000136869|O00206-2|TLR4	MULTI-MSMS	OvCa99_classI_Rep5	1	605.3135986328125	2	605.312832	1208.61111	1.8592	0.0011254	-0.36177	-0.00021898	1.4974	0.00090639	605.312365867529	138.18	0.59373	138.18	137.91	138.5	0					37	12	4	0	0	0	0.16138	1	16128	16128		85.161	17.667	1	346540			28354	4525	23238	23265	31613	31613					0.015149042229722909
LDLSLHSCD	9	Unmodified	_LDLSLHSCD_					0	0	0			REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.2853698730469	2	501.731674	1001.4488	-1.2449	-0.00062461	-2.6001	-0.0013046	-3.845	-0.0019292	501.73032078814157	81.958	0.76987	79.275	79.012	79.782	-2.6829					25	15	2	0	0	0	0.027462	1	6751	6751		24.203	0	1	60935	+		28355	19851	23239	23266	31614	31614					-0.051870594591719055
LDLTFIIHA	9	Unmodified	_LDLTFIIHA_					0	0	0		ENSG00000116903|ENST00000366645|EXOC8	ENSG00000116903|ENST00000366645|EXOC8	ENSG00000116903|ENST00000366645|EXOC8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.2730712890625	2	521.800217	1041.58588	-1.2585	-0.0006567	-3.2451	-0.0016933	-4.5037	-0.00235	521.7984301575574	95.09	1.7638	92.621	92.26	94.024	-2.4685					58	33	2	0	0	0	0.027462	1	8452	8452		24.203	0	1	173000			28356	3218	23240	23267	31615	31615					0.06675217482734297
LDLTGASAAP	10	Unmodified	_LDLTGASAAP_					0	0	0			REV__ENST00000467411.5_1_2:174223518-174228029:+|nuORF	REV__ENST00000467411.5_1_2:174223518-174228029:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	458.24969482421875	2	458.242732	914.470912	0.070795	3.2441E-05	0.43421	0.00019898	0.50501	0.00023142	458.24270922760326	68.911	0.97971	68.911	68.692	69.672	0					43	23	3	0	0	0	0.22395	1	6535	6535		90.777	0	1	2881200	+		28357	26206	23241	23268	31616	31616					0.010254882809022092
LDLTKLGIV	9	Unmodified	_LDLTKLGIV_					0	0	0			REV__ENSG00000188906|ENST00000298910|LRRK2	REV__ENSG00000188906|ENST00000298910|LRRK2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.78814697265625	2	486.310418	970.606283	-1.2736	-0.00061936	1.3873	0.00067465	0.1137	5.5295E-05	486.3110335045218	88.764	0.79366	86.161	85.882	86.676	-2.6027					25	15	2	0	0	0	0.027433	1	7556	7556		37.812	0	1	65665	+		28358	22748	23242	23269	31617	31617					0.11980388142524134
LDLTNKDF	8	Unmodified	_LDLTNKDF_					0	0	0			REV__ENSG00000068394|ENST00000156109|GPKOW	REV__ENSG00000068394|ENST00000156109|GPKOW	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.8276062011719	2	483.250557	964.486562	-0.45994	-0.00022226	0.12931	6.249E-05	-0.33063	-0.00015977	483.25019396030814	74.41	0.67054	71.179	70.861	71.532	-3.2308					28	13	3	0	0	0	0.028476	1	5811	5811		49.442	20.292	1	45955	+		28359	16852	23243	23270	31618	31618					0.002897747979545784
LDLTYEMGR	9	Unmodified	_LDLTYEMGR_					0	0	0			REV__nc|ENSG00000033100|Q9P2E5-2|CHPF2	REV__nc|ENSG00000033100|Q9P2E5-2|CHPF2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.2736206054688	2	549.268424	1096.5223	-1.2486	-0.0006858	0.98958	0.00054355	-0.25898	-0.00014225	549.7705735273516	43.309	0.52602	40.301	40.063	40.589	-3.0074					15	9	2	0	0	0	0.027462	1	2062	2062		23.523	17.21	1	14194	+		28360	16593	23244	23271	31619	31619					-0.02210511016687633
LDLVALMTPN	10	Unmodified	_LDLVALMTPN_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.84716796875	2	543.796817	1085.57908	1.2489	0.00067914	0.34268	0.00018635	1.5916	0.00086549	544.2986715189755	79.084	0.56671	79.084	78.869	79.436	0					17	13	2	0	0	0	0.026659	1	8071	8071		37.812	0	1	1150300	+		28361	18424	23245	23272	31620	31620					0.03971536539847875
LDLVFDVNI	9	Unmodified	_LDLVFDVNI_					0	0	0			REV__tr|A0A7D6VQF6|A0A7D6VQF6_9CLOTGlycyl-radicalenzymeactivatingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20700PE=3SV=1	REV__tr|A0A7D6VQF6|A0A7D6VQF6_9CLOTGlycyl-radicalenzymeactivatingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20700PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	523.8407592773438	2	524.289682	1046.56481	-1.0283	-0.00053914	-2.8385	-0.0014882	-3.8669	-0.0020274	524.2879681669532	101.99	1.5163	100.47	99.845	101.36	-1.5211					45	28	2	0	0	0	0.027118	1	7081	7081		74.255	0	1	177010	+		28362	31321	23246	23273	31621	31621					0.04339207383191024
LDLVFMDLKHG	11	Unmodified	_LDLVFMDLKHG_					0	0	0			REV__tr|A0A7D6ZW72|A0A7D6ZW72_9CLOTDUF975familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17875PE=4SV=1	REV__tr|A0A7D6ZW72|A0A7D6ZW72_9CLOTDUF975familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17875PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	643.373291015625	2	644.341923	1286.66929	-1.2612	-0.00081263	2.4391	0.0015716	1.1779	0.00075899	644.3435314031974	91.855	1.0189	89.831	89.433	90.452	-2.0241					45	20	3	0	0	0	0.02539	1	5784	5784		51.193	3.2332	1	164210	+		28363	32275	23247	23274	31622	31622					0.037425858682354374
LDLVQLNP	8	Unmodified	_LDLVQLNP_					0	0	0			REV__nc|ENSG00000139292|O75473-3|LGR5	REV__nc|ENSG00000139292|O75473-3|LGR5	MULTI-SECPEP	OvCa9_classI_Rep3	3	456.79827880859375	2	456.263468	910.512382	0.41339	0.00018861	0.56016	0.00025558	0.97355	0.00044419	456.26358545712924	104.86	0.57185	103.51	103.26	103.83	-1.3482					18	10	2	0	0	0	0.028476	1	7331	7331		79.451	5.4763	1	20416	+		28364	15893	23248	23275	31623	31623					0.05354669040218596
LDLVSKKL	8	Unmodified	_LDLVSKKL_					0	0	0		ENST00000549100.5_1_12:100631797-100646034:-|nuORF;ENSG00000166153|ENST00000550587|DEPDC4	ENST00000549100.5_1_12:100631797-100646034:-|nuORF	ENST00000549100.5_1_12:100631797-100646034:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	458.295166015625	2	458.29731	914.580068	0.0031602	1.4483E-06	-0.084774	-3.8852E-05	-0.081614	-3.7403E-05	458.29719173066195	69.084	1.6349	69.084	68.774	70.408	0					88	39	4	0	0	0	0.61436	1	6539	6539		60.972	2.19	1	12019000			28365	6643	23249	23276	31624	31624					0.11936118971038923
LDLYTTPED	9	Unmodified	_LDLYTTPED_					0	0	0			REV__tr|A0A7D6VR03|A0A7D6VR03_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03560PE=4SV=1	REV__tr|A0A7D6VR03|A0A7D6VR03_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03560PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.31591796875	2	533.750587	1065.48662	-0.74675	-0.00039858	-2.1513	-0.0011483	-2.8981	-0.0015468	533.7518296315776	123.24	0.34698	121.88	121.6	121.95	-1.3666					9	6	2	0	0	0	0.02741	1	11631	11631		51.335	0	1	9458.7	+		28366	31375	23250	23277	31625	31625					-0.043502699927103095
LDMAWVYR	8	Unmodified	_LDMAWVYR_					0	0	0			REV__ENSG00000103335|ENST00000301015|PIEZO1	REV__ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	OvCa9_classI_Rep3	3	527.2607421875	2	527.262945	1052.51134	-0.070225	-3.7027E-05	-3.7075	-0.0019548	-3.7778	-0.0019919	527.2609378955284	106.61	1.4567	105.34	104.96	106.41	-1.267					71	28	4	0	0	0	0.62934	1	7538	7538		57.811	2.3071	1	624930	+		28367	17612	23251	23278	31626	31626					-0.012818686003129187
LDMEFITMLKQ	11	Unmodified	_LDMEFITMLKQ_					0	0	0		tr|A0A553SNA4|A0A553SNA4_NIACISporulationhistidinekinaseinhibitorSdaOS=NialliacirculansOX=1397GN=CEQ21_24095PE=4SV=1	tr|A0A553SNA4|A0A553SNA4_NIACISporulationhistidinekinaseinhibitorSdaOS=NialliacirculansOX=1397GN=CEQ21_24095PE=4SV=1	tr|A0A553SNA4|A0A553SNA4_NIACISporulationhistidinekinaseinhibitorSdaOS=NialliacirculansOX=1397GN=CEQ21_24095PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.9244384765625	3	456.901575	1367.68289	0.20313	9.2811E-05	0.47546	0.00021724	0.6786	0.00031005	456.90227865557057	31.584	0.2481	31.584	31.509	31.757	0					6	4	2	0	0	0	0.026033	1	1306	1306		17.167	0.44936	1	9427.5			28368	33912	23252	23279	31627	31627					0.013760755851762951
LDMFHVFF	8	Unmodified	_LDMFHVFF_					0	0	0			REV__nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	REV__nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.28955078125	2	528.254588	1054.49462	-1.7044	-0.00090037	0.99977	0.00052813	-0.70466	-0.00037224	528.2545441337553	120.6	0.31358	119.25	118.98	119.29	-1.3468					7	5	2	0	0	0	0.028476	1	11334	11334		8.8223	0	1	11934	+		28369	18955	23253	23280	31628	31628					-0.030443694862697157
LDMHIVKT	8	Unmodified	_LDMHIVKT_					0	0	0		tr|A0A7D6W479|A0A7D6W479_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_15370PE=3SV=1	tr|A0A7D6W479|A0A7D6W479_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_15370PE=3SV=1	tr|A0A7D6W479|A0A7D6W479_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_15370PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.78240966796875	2	478.76532	955.516088	-2.3682	-0.0011338	-2.5861	-0.0012381	-4.9542	-0.0023719	478.76354223139265	104.18	0.51315	104.18	103.98	104.49	0					15	11	2	0	0	0	0.028476	1	11663	11663		87.754	2.3948	1	101400			28370	35472	23254	23281	31629	31629					0.036550155424492914
LDMHWIRW	8	Unmodified	_LDMHWIRW_					0	0	0			REV__ENST00000467733.1_1_3:156262080-156272878:-|nuORF	REV__ENST00000467733.1_1_3:156262080-156272878:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	578.7907104492188	2	578.789661	1155.56477	1.3855	0.00080189	-3.3655	-0.0019479	-1.98	-0.001146	578.7874595301851	125.36	0.80071	125.36	125.14	125.95	0					41	19	3	0	0	0	0.7224	1	14480	14480		38.806	1.647	1	658390	+		28371	18204	23255	23282	31630	31630					-0.006790710978066272
LDMKTKQIQ	9	Oxidation (M)	_LDM(Oxidation (M))KTKQIQ_		LDM(1)KTKQIQ		LDM(49)KTKQIQ	0	0	1			REV__ENSG00000153347|ENST00000283357|FAM81B	REV__ENSG00000153347|ENST00000283357|FAM81B	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.8032836914062	2	560.805174	1119.59579	1.6271	0.00091251	-4.4862	-0.0025159	-2.8591	-0.0016034	560.802565252688	113.47	2.0685	112.03	111.61	113.67	-1.4461					95	40	3	0	0	0	0.42676	1	10583	10583		49.442	7.0454	1	624400	+		28372	20339	23256	23283	31631	31631		476			0.04078037425779257
LDMSHQLE	8	Unmodified	_LDMSHQLE_					0	0	0		tr|A0A7D6VY27|A0A7D6VY27_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14230PE=4SV=1	tr|A0A7D6VY27|A0A7D6VY27_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14230PE=4SV=1	tr|A0A7D6VY27|A0A7D6VY27_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14230PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.7784118652344	2	486.726392	971.438231	-0.54811	-0.00026678	0.75861	0.00036924	0.2105	0.00010246	486.72661796061067	73.9	1.0485	70.669	70.434	71.483	-3.2308					31	21	2	0	0	0	0.028476	1	5830	5830		55.504	0	1	83515			28373	35312	23257	23284	31632	31632					-0.04863042113584015
LDNDENRK	8	Unmodified	_LDNDENRK_					0	0	0			REV__tr|A0A7D7A633|A0A7D7A633_9CLOTDUF2334domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08770PE=4SV=1	REV__tr|A0A7D7A633|A0A7D7A633_9CLOTDUF2334domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08770PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	502.2436218261719	2	502.243795	1002.47304	2.08	0.0010447	-3.573	-0.0017945	-1.493	-0.00074984	502.24187681544856	137.04	0.91562	137.04	136.77	137.69	0					42	18	4	0	0	0	0.66057	1	16002	16002		51.335	1.8939	1	692550	+		28374	32650	23258	23285	31633	31633					-0.028100829812842676
LDNGTIPSKVN	11	Unmodified	_LDNGTIPSKVN_					0	0	0			REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	579.3109130859375	2	579.311677	1156.6088	-1.3424	-0.00077765	0.73594	0.00042634	-0.60642	-0.00035131	579.3120320052601	99.586	2.05	97.901	97.474	99.524	-1.685					95	40	4	0	0	0	0.55686	1	6725	6725		48.602	0.68595	1	1018700	+		28375	17779	23259	23286	31634	31634					0.03676191809518059
LDNNGVGELN	10	Unmodified	_LDNNGVGELN_					0	0	0			REV__HFM1|p.F1400Lfs*25|1|0.44|ENSG00000162669|chr1:91262279-91262279|A/-|frameshift_variant	REV__HFM1|p.F1400Lfs*25|1|0.44|ENSG00000162669|chr1:91262279-91262279|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.291259765625	2	522.751453	1043.48835	-1.3489	-0.00070516	-1.4273	-0.00074611	-2.7762	-0.0014513	523.2513380990661	92.762	0.60353	90.255	90.01	90.614	-2.5072					32	11	4	0	0	0	0.026656	1	8037	8037		56.434	6.9922	1	32413	+		28376	20763	23260	23287	31635	31635					-0.031652161840838744
LDNNGVGELN	10	Unmodified	_LDNNGVGELN_					0	0	0			REV__HFM1|p.F1400Lfs*25|1|0.44|ENSG00000162669|chr1:91262279-91262279|A/-|frameshift_variant	REV__HFM1|p.F1400Lfs*25|1|0.44|ENSG00000162669|chr1:91262279-91262279|A/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	522.751453	1043.48835	-1.2977	-0.00067836	-2.2707	-0.001187	-3.5684	-0.0018654	523.2495774182468	92.155	0.23911	90.131	89.941	90.18	-2.0241	-0.061956	-0.00041848	NaN	56.434	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46862	+		28377	20763	23260	23287							-0.031652161840838744
LDNRVVLI	8	Unmodified	_LDNRVVLI_					0	0	0			REV__ENSG00000141378|ENST00000393038|PTRH2	REV__ENSG00000141378|ENST00000393038|PTRH2	MULTI-MSMS	OvCa9_classI_Rep2	2	471.2925109863281	2	471.292559	940.570566	0.33373	0.00015729	-0.47934	-0.00022591	-0.14561	-6.8623E-05	471.2921963660587	81.554	1.3417	79.906	79.514	80.856	-1.6485					81	25	4	0	0	0	0.56195	1	6949	6949		71.296	7.0884	1	678110	+		28378	19730	23261	23288	31636	31636					0.09790350685523208
LDNRVVLI	8	Unmodified	_LDNRVVLI_					0	0	0			REV__ENSG00000141378|ENST00000393038|PTRH2	REV__ENSG00000141378|ENST00000393038|PTRH2	MULTI-MSMS	OvCa9_classI_Rep3	3	471.2932434082031	2	471.292559	940.570566	-0.27751	-0.00013079	0.10562	4.9779E-05	-0.17189	-8.101E-05	471.2925260681946	81.937	1.3959	79.64	79.284	80.68	-2.2963					82	27	4	0	0	0	0.57734	1	4598	4598		68.787	5.4806	1	1242100	+		28379	19730	23261	23288	31637	31637					0.09790350685523208
LDNRVVLI	8	Unmodified	_LDNRVVLI_					0	0	0			REV__ENSG00000141378|ENST00000393038|PTRH2	REV__ENSG00000141378|ENST00000393038|PTRH2	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.2934265136719	2	471.292559	940.570566	0.20034	9.4418E-05	-0.50937	-0.00024006	-0.30903	-0.00014564	471.29218878217125	82.54	1.368	79.857	79.489	80.857	-2.6829					80	27	4	0	0	0	0.6962	1	6815	6815		44.117	0	1	1141500	+		28380	19730	23261	23288	31638	31638					0.09790350685523208
LDNTMNESD	9	Unmodified	_LDNTMNESD_					0	0	0			REV__tr|A0A553SG06|A0A553SG06_NIACIGlyoxalaseOS=NialliacirculansOX=1397GN=CEQ21_09895PE=4SV=1	REV__tr|A0A553SG06|A0A553SG06_NIACIGlyoxalaseOS=NialliacirculansOX=1397GN=CEQ21_09895PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.7930297851562	2	519.705854	1037.39715	-2.1742	-0.00113	0.66509	0.00034565	-1.5091	-0.00078431	519.7060623452933	87.729	0.80571	85.102	84.799	85.605	-2.6269					23	15	2	0	0	0	0.027462	1	7443	7443		37.812	11.119	1	51353	+		28381	29644	23262	23289	31639	31639					-0.12004847943717323
LDNVRMTLRE	10	Unmodified	_LDNVRMTLRE_					0	0	0			REV__nc|ENSG00000182923|Q96MT8-4|CEP63	REV__nc|ENSG00000182923|Q96MT8-4|CEP63	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.56988525390625	3	416.223928	1245.64996	-0.0079559	-3.3114E-06	3.5194	0.0014649	3.5115	0.0014616	416.2252327975078	39.641	0.16399	39.641	39.505	39.669	0					5	3	2	0	0	0	0.027089	1	2330	2330		25.126	0	1	57509	+		28382	22327	23263	23290	31640	31640					0.03695629577373438
LDNWILVL	8	Unmodified	_LDNWILVL_					0	0	0		ENST00000332843.2_1_8:120079524-120116116:+|nuORF	ENST00000332843.2_1_8:120079524-120116116:+|nuORF	ENST00000332843.2_1_8:120079524-120116116:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3246154785156	2	493.289485	984.564418	0.041319	2.0382E-05	-4.1524	-0.0020483	-4.1111	-0.002028	493.28705397720586	79.777	1.2033	77.437	76.657	77.861	-2.3399					41	23	3	0	0	0	0.024229	1	4376	4376		128.86	27.65	1	79277			28383	10463	23264	23291	31641	31641					0.07151832453996576
LDPATHTK	8	Unmodified	_LDPATHTK_					0	0	0		tr|A0A7D6W3N9|A0A7D6W3N9_9CLOTBranched-chain-amino-acidaminotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10905PE=3SV=1	tr|A0A7D6W3N9|A0A7D6W3N9_9CLOTBranched-chain-amino-acidaminotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10905PE=3SV=1	tr|A0A7D6W3N9|A0A7D6W3N9_9CLOTBranched-chain-amino-acidaminotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10905PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	442.1979064941406	2	441.737617	881.460681	0.66471	0.00029363	0.38311	0.00016923	1.0478	0.00046286	441.7374949816686	68.391	0.41587	68.391	68.233	68.649	0					15	9	2	0	0	0	0.028476	1	6469	6469		25.574	0	1	332890			28384	35457	23265	23292	31642	31642					0.015209253463126515
LDPATSDGRV	10	Unmodified	_LDPATSDGRV_					0	0	0		nc|ENSG00000115159|P43304-2|GPD2;ENSG00000115159|ENST00000438166|GPD2	nc|ENSG00000115159|P43304-2|GPD2	nc|ENSG00000115159|P43304-2|GPD2	MULTI-MSMS	OvCa99_classI_Rep5	1	515.7631225585938	2	515.76182	1029.50909	-0.5229	-0.00026969	1.3376	0.00068987	0.81468	0.00042018	515.7619151982608	60.195	0.84921	60.195	59.839	60.688	0					37	20	4	0	0	0	0.39172	1	5221	5221		69.628	3.8245	1	2804400			28385	3065	23266	23293	31643	31643					-0.00448625804438052
LDPDMFLPDL	10	Unmodified	_LDPDMFLPDL_					0	0	0			REV__UBR1|p.D1423Vfs*11|1|0.83|ENSG00000159459|chr15:42976794-42976818|GAACTAACTGAAGAAGGCTGCAGAT/-|frameshift_variant	REV__UBR1|p.D1423Vfs*11|1|0.83|ENSG00000159459|chr15:42976794-42976818|GAACTAACTGAAGAAGGCTGCAGAT/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.8082885742188	2	588.286282	1174.55801	0.060306	3.5477E-05	-1.0521	-0.00061893	-0.99178	-0.00058345	588.2857893531973	105.38	0.70261	105.38	105.04	105.75	0					25	15	2	0	0	0	0.026849	1	11818	11818		25.574	3.6142	1	569410	+		28386	20617	23267	23294	31644	31644					-0.022284735596940664
LDPGSLDL	8	Unmodified	_LDPGSLDL_					0	0	0			REV__ENST00000591912.1_1_19:11664563-11664692:-|nuORF	REV__ENST00000591912.1_1_19:11664563-11664692:-|nuORF	MSMS	OvCa99_classI_Rep5	1	415.2196044921875	2	415.218726	828.422899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.021	1	54.021	53.521	54.521	0								0	0	0	0.30129	1	4334	4334		73.975	2.5968	1		+		28387	27938	23268	23295	31645	31645					0.0018241436084736051
LDPHPMLPN	9	Unmodified	_LDPHPMLPN_					0	0	0		nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2951049804688	2	517.260402	1032.50625	-0.25289	-0.00013081	4.3578	0.0022541	4.1049	0.0021233	517.7632333236971	31.772	0.14923	31.772	31.658	31.807	0					4	2	2	0	0	0	0.027462	1	1333	1333		37.159	12.64	1	7805			28388	1564	23269	23296	31646	31646					-0.008701724629190721
LDPKAIKEL	9	Unmodified	_LDPKAIKEL_					0	0	0		tr|A0A7D6W389|A0A7D6W389_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09325PE=4SV=1	tr|A0A7D6W389|A0A7D6W389_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09325PE=4SV=1	tr|A0A7D6W389|A0A7D6W389_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09325PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	513.8153076171875	2	513.813325	1025.6121	-0.4504	-0.00023142	3.9685	0.002039	3.5181	0.0018076	513.8152848157494	74.741	2.4404	72.77	72.324	74.764	-1.9711					110	46	3	0	0	0	0.55588	1	6142	6142		37.159	0.13063	1	2623500			28389	35446	23270	23297	31647	31647					0.10031486654179389
LDPLAEGR	8	Unmodified	_LDPLAEGR_					0	0	0		nc|ENSG00000155886|Q9UI40-2|SLC24A2	nc|ENSG00000155886|Q9UI40-2|SLC24A2	nc|ENSG00000155886|Q9UI40-2|SLC24A2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.262451171875	2	435.737617	869.460681	-0.24818	-0.00010814	0.20946	9.1271E-05	-0.038713	-1.6869E-05	435.73768660912884	65.626	0.5826	62.14	61.938	62.521	-3.4854					15	11	2	0	0	0	0.028476	1	4709	4709		65.803	0	1	19800			28390	15111	23271	23298	31648	31648					0.02072925346340071
LDPLAPLNP	9	Unmodified	_LDPLAPLNP_					0	0	0		nc|ENSG00000175854|Q1ZZU3|SWI5	nc|ENSG00000175854|Q1ZZU3|SWI5	nc|ENSG00000175854|Q1ZZU3|SWI5	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.31304931640625	2	475.271293	948.528032	-0.9503	-0.00045165	-0.04109	-1.9529E-05	-0.99139	-0.00047118	475.27085084638577	103.48	0.83885	102.8	102.43	103.27	-0.68459					23	16	2	0	0	0	0.027426	1	9532	9532		66.429	23.955	1	24408			28391	15188	23272	23299	31649	31649					0.05170955557287016
LDPLHGREV	9	Unmodified	_LDPLHGREV_					0	0	0			REV__HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|218|3|anti-sense	REV__HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|218|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	518.2818603515625	2	518.282723	1034.55089	0.26729	0.00013853	-0.81508	-0.00042244	-0.54778	-0.00028391	518.2822567889135	66.733	2.873	64.037	63.567	66.44	-2.6958					124	57	4	0	0	0	0.3249	1	5206	5206		60.118	3.3972	1	1284900	+		28392	28249	23273	23300	31650	31650					0.03499974674764417
LDPLQKALLPS	11	Unmodified	_LDPLQKALLPS_					0	0	0		ENST00000409988.7_1_2:201170916-201171069:+|nuORF	ENST00000409988.7_1_2:201170916-201171069:+|nuORF	ENST00000409988.7_1_2:201170916-201171069:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8565063476562	2	597.858264	1193.70197	-2.7036	-0.0016164	-0.53743	-0.00032131	-3.241	-0.0019377	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.70142	1	12390	12390		29.17	1.0886	1	591030			28393	11541	23274	23301	31651	31651					0.11287116262769814
LDPNGALD	8	Unmodified	_LDPNGALD_					0	0	0			REV__ENST00000519834.5_1_17:4855124-4857242:+|nuORF	REV__ENST00000519834.5_1_17:4855124-4857242:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	407.7037658691406	2	407.7007	813.386848	1.266	0.00051616	4.4787	0.001826	5.7447	0.0023421	407.7024208469781	62.223	0.62301	62.223	62.038	62.661	0					25	14	3	0	0	0	0.72896	1	5534	5534		37.159	6.6555	1	696920	+		28394	16355	23275	23302	31652	31652					-0.027310428159921685
LDPNGALD	8	Unmodified	_LDPNGALD_					0	0	0			REV__ENST00000519834.5_1_17:4855124-4857242:+|nuORF	REV__ENST00000519834.5_1_17:4855124-4857242:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	407.7007	813.386848	1.266	0.00051616	4.4787	0.001826	5.7447	0.0023421	407.7024208469781	62.223	0.62301	62.223	62.038	62.661	0	0	0	NaN	37.159	25	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	696920	+		28395	16355	23275	23302							-0.027310428159921685
LDPQSYSLI	9	Unmodified	_LDPQSYSLI_					0	0	0		nc|ENSG00000148200|Q15406-3|NR6A1;nc|ENSG00000148200|Q15406-5|NR6A1;nc|ENSG00000148200|Q15406-2|NR6A1;nc|ENSG00000148200|Q15406-4|NR6A1;ENSG00000148200|ENST00000487099|NR6A1	nc|ENSG00000148200|Q15406-3|NR6A1	nc|ENSG00000148200|Q15406-3|NR6A1	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.811767578125	2	518.27149	1034.52843	0.0086683	4.4925E-06	1.7382	0.00090083	1.7468	0.00090533	518.2720665934028	97.745	1.6777	95.986	95.722	97.399	-1.7595					44	32	2	0	0	0	0.027433	1	6584	6584		37.812	6.2817	1	122470			28396	5391	23276	23303	31653	31653					0.012543304864948368
LDPQYGSAQL	10	Unmodified	_LDPQYGSAQL_					0	0	0			REV__ENSG00000197557|ENST00000355689|TTC30A	REV__ENSG00000197557|ENST00000355689|TTC30A	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.2694091796875	2	546.272021	1090.52949	-0.58721	-0.00032077	1.8621	0.0010172	1.2749	0.00069643	546.2733029570787	59.044	0.44759	59.044	58.892	59.34	0					14	11	2	0	0	0	0.02663	1	5048	5048		51.193	6.8155	1	1316400	+		28397	22934	23277	23304	31654	31654					-0.012154551446201367
LDPRTLRLLW	10	Unmodified	_LDPRTLRLLW_					0	0	0		ENST00000492515.1_1_11:558546-558956:-|nuORF;ENSG00000185522|ENST00000329451|LMNTD2	ENST00000492515.1_1_11:558546-558956:-|nuORF	ENST00000492515.1_1_11:558546-558956:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8836669921875	2	641.885147	1281.75574	-3.6311	-0.0023307	-0.33677	-0.00021616	-3.9678	-0.0025469	641.8847801872174	153.39	4.0845	151.94	150.68	154.77	-1.4516					420	106	6	0	0	0	0.74374	1	15277	15277		25.574	1.0549	1	809780			28398	8260	23278	23305	31655	31655					0.12613333485114708
LDPTKPPSLA	10	Unmodified	_LDPTKPPSLA_					0	0	0		ENSG00000111981|ENST00000229708|ULBP1	ENSG00000111981|ENST00000229708|ULBP1	ENSG00000111981|ENST00000229708|ULBP1	MULTI-MSMS	OvCa9_classI_Rep2	2	519.7942504882812	2	519.795132	1037.57571	-0.83173	-0.00043233	-1.6752	-0.00087074	-2.5069	-0.0013031	519.7941003158112	120.39	3.5079	120.22	119.69	123.2	-0.17137					148	70	4	0	0	0	0.49595	1	11608	11608		54.722	1.7857	1	553870			28399	2870	23279	23306	31656	31656					0.05842609757473838
LDPTNVDVL	9	Unmodified	_LDPTNVDVL_					0	0	0			REV__ENST00000488537.1_1_1:145439826-145440208:+|nuORF	REV__ENST00000488537.1_1_1:145439826-145440208:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.32452392578125	2	493.263665	984.512776	0.37889	0.00018689	-1.6844	-0.00083086	-1.3055	-0.00064397	493.26294273662137	115.93	0.69275	114.56	114.24	114.94	-1.3712					18	13	2	0	0	0	0.02744	1	10845	10845		44.377	0	1	21631	+		28400	26621	23280	23307	31657	31657					0.01990043969431099
LDPTQRILY	9	Unmodified	_LDPTQRILY_					0	0	0		ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	MULTI-MSMS	OvCa99_classI_Rep5	1	559.8174438476562	2	559.813856	1117.61316	2.0742	0.0011611	3.1356	0.0017553	5.2097	0.0029165	559.8156915922438	133.1	8.2265	133.1	132.6	140.83	0					464	175	6	0	0	0	0.33652	1	15554	15554		58.782	0.97068	1	47573000			28401	9589	23281	23308	31658	31658					0.05905701023107213
LDPTSHALTL	10	Unmodified	_LDPTSHALTL_					0	0	0		ENST00000255631.9_1_19:55773740-55773947:-|nuORF	ENST00000255631.9_1_19:55773740-55773947:-|nuORF	ENST00000255631.9_1_19:55773740-55773947:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.2894287109375	2	534.290214	1066.56587	-1.2292	-0.00065674	1.2751	0.00068125	0.045877	2.4512E-05	534.2907381876073	123.64	1.1885	122.28	121.7	122.89	-1.3687					49	23	3	0	0	0	0.59703	1	11710	11710		42.396	1.618	1	92199			28402	9822	23282	23309	31659	31659					0.03525421752101465
LDQERQLERII	11	Unmodified	_LDQERQLERII_					0	0	0			REV__nc|ENSG00000165288|Q6RI45-5|BRWD3	REV__nc|ENSG00000165288|Q6RI45-5|BRWD3	MULTI-SECPEP	OvCa9_classI_Rep2	2	470.7956848144531	3	471.600052	1411.77833	0.21052	9.9282E-05	-0.87562	-0.00041294	-0.6651	-0.00031366	471.9340401543096	79.436	0.31292	77.696	77.565	77.878	-1.7398					6	5	2	0	0	0	0.026101	1	6691	6691		21.032	12.625	1	8609.6	+		28403	21077	23283	23310	31660	31660					0.08890888092082605
LDQGGFKIY	9	Unmodified	_LDQGGFKIY_					0	0	0		ENST00000484717.5_1_3:38035793-38043423:+|nuORF;nc|ENSG00000136059|O15195-2|VILL;ENSG00000136059|ENST00000383759|VILL	ENST00000484717.5_1_3:38035793-38043423:+|nuORF	ENST00000484717.5_1_3:38035793-38043423:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.8382568359375	2	520.7742	1039.53385	-1.3543	-0.00070529	-2.4093	-0.0012547	-3.7636	-0.00196	520.7727269801812	34.888	0.74953	34.888	34.725	35.475	0					23	15	3	0	0	0	0.027462	1	1721	1721		37.159	5.2042	1	133760			28404	4454	23284	23311	31661	31661					0.015660540689623303
LDQIKSFFA	9	Unmodified	_LDQIKSFFA_					0	0	0		tr|A0A7D7ABB7|A0A7D7ABB7_9CLOTDivIVAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14630PE=3SV=1	tr|A0A7D7ABB7|A0A7D7ABB7_9CLOTDivIVAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14630PE=3SV=1	tr|A0A7D7ABB7|A0A7D7ABB7_9CLOTDivIVAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14630PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.3053588867188	2	534.78985	1067.56515	-0.31996	-0.00017111	1.3822	0.0007392	1.0623	0.00056809	535.2911437465475	52.334	2.1465	52.334	51.669	53.815	0					119	49	3	0	0	0	0.027047	1	4008	4008		99.375	55.258	1	1449700			28405	36216	23285	23312	31662	31662					0.034066271030496864
LDQIYVPK	8	Unmodified	_LDQIYVPK_					0	0	0			REV__ENSG00000112249|ENST00000369162|ASCC3	REV__ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	OvCa9_classI_Rep2	2	488.2793273925781	2	488.279118	974.543683	-0.5288	-0.0002582	0.51997	0.00025389	-0.0088288	-4.3109E-06	488.27920793179874	103.4	1.5829	102.71	102.38	103.96	-0.68459					65	31	4	0	0	0	0.48084	1	9553	9553		79.451	0	1	313430	+		28406	18089	23286	23313	31663	31663					0.055392420743373805
LDQLAHLL	8	Unmodified	_LDQLAHLL_					0	0	0			REV__ENSG00000188770|ENST00000367222|OPTC	REV__ENSG00000188770|ENST00000367222|OPTC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.3245849609375	2	461.77146	921.528367	-0.87018	-0.00040182	1.2337	0.0005697	0.36355	0.00016788	461.7715683923257	83.044	0.53601	80.361	80.124	80.66	-2.6829					15	10	2	0	0	0	0.028476	1	6891	6891		35.201	0	1	39136	+		28407	22735	23287	23314	31664	31664					0.06446375277153038
LDQLLEVEP	9	Unmodified	_LDQLLEVEP_					0	0	0			REV__ENSG00000144010|ENST00000639673|TRIM43B	REV__ENSG00000144010|ENST00000639673|TRIM43B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.3042602539062	2	528.284597	1054.55464	-1.0125	-0.00053491	3.0626	0.0016179	2.0501	0.001083	528.2863593199471	96.211	0.55795	93.785	93.457	94.015	-2.4256					16	10	2	0	0	0	0.027462	1	8458	8458		42.864	5.0528	1	33078	+		28408	19882	23288	23315	31665	31665					0.029545996579372513
LDQLLEVEP	9	Unmodified	_LDQLLEVEP_					0	0	0			REV__ENSG00000144010|ENST00000639673|TRIM43B	REV__ENSG00000144010|ENST00000639673|TRIM43B	MULTI-MATCH	OvCa99_classI_Rep5	1		2	528.284597	1054.55464	1.2018	0.00063488	9.769	0.0051608	10.971	0.0057957	528.7908432191805	93.512	0.53476	93.512	93.179	93.714	0	-0.18563	0.0053798	NaN	53.089	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	270620	+		28409	19882	23288	23315							0.029545996579372513
LDQLWVFCL	9	Unmodified	_LDQLWVFCL_					0	0	0			REV__ENST00000471395.1_1_2:70043067-70043361:+|nuORF	REV__ENST00000471395.1_1_2:70043067-70043361:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	568.8006591796875	2	568.794078	1135.5736	1.4874	0.00084601	2.2816	0.0012978	3.769	0.0021438	568.7952670848045	138.59	0.38078	138.59	138.4	138.78	0					11	7	2	0	0	0	0.53957	1	16169	16169		38.806	0	1	124930	+		28410	26281	23289	23316	31666	31666					0.011238577480071399
LDQQTSILI	9	Unmodified	_LDQQTSILI_					0	0	0		CHML|p.T511Sfs*6|1|0.06|ENSG00000203668|chr1:241634235-241634236|-/C|frameshift_variant;CHML|p.E537Gfs*15|1|0.28|ENSG00000203668|chr1:241634147-241634157|CTCGTTTATTT/-|frameshift_variant;ENSG00000203668|ENST00000366553|CHML	CHML|p.T511Sfs*6|1|0.06|ENSG00000203668|chr1:241634235-241634236|-/C|frameshift_variant	CHML|p.T511Sfs*6|1|0.06|ENSG00000203668|chr1:241634235-241634236|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7941284179688	2	515.792589	1029.57063	-0.98838	-0.0005098	1.5653	0.00080738	0.57694	0.00029758	515.7931682974696	53.212	0.8096	50.004	49.746	50.556	-3.208					41	15	3	0	0	0	0.42676	1	3245	3245		49.442	6.5773	1	235430			28411	234	23290	23317	31667	31667					0.05702305894874371
LDQRNQLLEV	10	Unmodified	_LDQRNQLLEV_					0	0	0		nc|ENSG00000144524|Q9H9Q2-2|COPS7B;ENSG00000144524|ENST00000350033|COPS7B;nc|ENSG00000144524|Q9H9Q2-3|COPS7B	nc|ENSG00000144524|Q9H9Q2-2|COPS7B	nc|ENSG00000144524|Q9H9Q2-2|COPS7B	MULTI-SECPEP	OvCa9_classI_Rep2	2	409.9046936035156	3	409.894577	1226.6619	0.5095	0.00020884	-1.8262	-0.00074854	-1.3167	-0.0005397	409.8938274290874	69.389	0.19983	66.768	66.665	66.865	-2.6203					5	3	2	0	0	0	0.02716	1	5509	5509		28.577	2.5133	1	5099.1			28412	5156	23291	23318	31668	31668					0.05763569592181739
LDQRNQRIR	9	Unmodified	_LDQRNQRIR_					0	0	0			REV__nc|ENSG00000128253|O75678-3|RFPL2	REV__nc|ENSG00000128253|O75678-3|RFPL2	MULTI-MSMS	OvCa99_classI_Rep5	1	400.2305908203125	3	400.230294	1197.66905	1.4758	0.00059066	-1.7684	-0.00070777	-0.29261	-0.00011711	400.2296656139339	31.004	2.2168	31.004	30.483	32.7	0					86	44	4	0	0	0	0.51177	1	1252	1252		41.427	0.34655	1	6329900	+		28413	18847	23292	23319	31669	31669					0.0781234698326898
LDQRYLLVP	9	Unmodified	_LDQRYLLVP_					0	0	0		ENSG00000105671|ENST00000247003|DDX49;ENST00000601803.5_1_19:19032987-19035509:+|nuORF;nc|ENSG00000105671|Q9Y6V7-2|DDX49;ENST00000595858.5_1_19:19032475-19037138:+|nuORF;DDX49|p.M267Tfs*129|1|0.04|ENSG00000105671|chr19:18924256-18924257|TG/-|frameshift_variant	ENSG00000105671|ENST00000247003|DDX49	ENSG00000105671|ENST00000247003|DDX49	MULTI-MSMS	OvCa9_classI_Rep2	2	558.8234252929688	2	558.824224	1115.63389	0.7464	0.0004171	-0.83231	-0.00046512	-0.085917	-4.8012E-05	558.8236659810575	123.68	2.1192	123.45	122.89	125.01	-0.23193					85	36	4	0	0	0	0.44568	1	12037	12037		47.657	8.4045	1	148050			28414	2487	23293	23320	31670	31670					0.08070291402736984
LDQRYLLVP	9	Unmodified	_LDQRYLLVP_					0	0	0		ENSG00000105671|ENST00000247003|DDX49;ENST00000601803.5_1_19:19032987-19035509:+|nuORF;nc|ENSG00000105671|Q9Y6V7-2|DDX49;ENST00000595858.5_1_19:19032475-19037138:+|nuORF;DDX49|p.M267Tfs*129|1|0.04|ENSG00000105671|chr19:18924256-18924257|TG/-|frameshift_variant	ENSG00000105671|ENST00000247003|DDX49	ENSG00000105671|ENST00000247003|DDX49	MULTI-MATCH	OvCa9_classI_Rep3	3		2	558.824224	1115.63389	1.1111	0.00062091	-1.0535	-0.00058871	0.05763	3.2205E-05	558.8234813578719	124.63	1.8182	123.58	123.22	125.04	-1.0519	0.033009	-0.00070401	NaN	47.657	74	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149880			28415	2487	23293	23320							0.08070291402736984
LDQSDQDFQE	10	Unmodified	_LDQSDQDFQE_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;ENST00000560020.1_1_15:91017736-91017973:+|nuORF	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	613.3550415039062	2	612.754389	1223.49423	0.90281	0.0005532	3.0796	0.0018871	3.9824	0.0024403	612.7560284071166	158.87	0.33862	158.87	158.65	158.99	0					10	6	2	0	0	0	0.026714	1	18602	18602		51.193	11.94	1	43208			28416	4862	23294	23321	31671	31671					-0.10858162463068766
LDQSRPADP	9	Unmodified	_LDQSRPADP_					0	0	0			REV__ENST00000534205.1_1_11:35881882-35882566:-|nuORF	REV__ENST00000534205.1_1_11:35881882-35882566:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	499.76495361328125	2	499.748713	997.482873	0.4273	0.00021354	1.628	0.00081361	2.0553	0.0010272	499.74959833807867	126.38	0.78752	126.15	125.9	126.69	-0.2359					22	15	3	0	0	0	0.027402	1	12400	12400		47.657	5.2612	1	34322	+		28417	27263	23295	23322	31672	31672					-0.015968949759098905
LDQTGRWTES	10	Unmodified	_LDQTGRWTES_					0	0	0			REV__ENSG00000162592|ENST00000294600|CCDC27	REV__ENSG00000162592|ENST00000294600|CCDC27	MULTI-SECPEP	OvCa9_classI_Rep4_	4	596.3231201171875	2	596.783284	1191.55202	0.24493	0.00014617	4.1168	0.0024569	4.3618	0.002603	596.7844096005571	90.812	0.77079	88.237	88.058	88.829	-2.575					21	14	2	0	0	0	0.026891	1	7870	7870		18.262	2.6203	1	16528	+		28418	20749	23296	23323	31673	31673					-0.03609855747004076
LDQVDGSFGI	10	Unmodified	_LDQVDGSFGI_					0	0	0		ENSG00000118156|ENST00000391901|ZNF541	ENSG00000118156|ENST00000391901|ZNF541	ENSG00000118156|ENST00000391901|ZNF541	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.8119506835938	2	525.758746	1049.50294	-1.3472	-0.00070829	-1.5027	-0.00079004	-2.8499	-0.0014983	525.7578288596236	70.925	1.7453	67.468	67.008	68.753	-3.4563					64	31	3	0	0	0	0.026659	1	5476	5476		37.812	3.639	1	545600			28419	3290	23297	23324	31674	31674					-0.01983144035943951
LDQVDGSFGI	10	Unmodified	_LDQVDGSFGI_					0	0	0		ENSG00000118156|ENST00000391901|ZNF541	ENSG00000118156|ENST00000391901|ZNF541	ENSG00000118156|ENST00000391901|ZNF541	MULTI-MATCH	OvCa9_classI_Rep2	2		2	525.758746	1049.50294	-0.24976	-0.00013131	-2.8744	-0.0015113	-3.1242	-0.0016426	525.7571197837215	70.008	1.4052	67.437	66.865	68.27	-2.5707	-0.015474	-0.00041459	NaN	37.812	80	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200610			28420	3290	23297	23324							-0.01983144035943951
LDQVKLVH	8	Unmodified	_LDQVKLVH_					0	0	0			REV__BRAT1|p.D190*|1|0.06|ENSG00000106009|chr7:2543826-2543827|-/C|frameshift_variant	REV__BRAT1|p.D190*|1|0.06|ENSG00000106009|chr7:2543826-2543827|-/C|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	477.27398681640625	2	476.284734	950.554916	-0.068206	-3.2486E-05	0.14313	6.817E-05	0.074923	3.5685E-05	476.2848417448836	93.957	1.0686	91.995	91.729	92.798	-1.9617					27	20	2	0	0	0	0.028476	1	6097	6097		31.955	1.4512	1	36661	+		28421	15708	23298	23325	31675	31675					0.07766064168470166
LDQVKLVH	8	Unmodified	_LDQVKLVH_					0	0	0			REV__BRAT1|p.D190*|1|0.06|ENSG00000106009|chr7:2543826-2543827|-/C|frameshift_variant	REV__BRAT1|p.D190*|1|0.06|ENSG00000106009|chr7:2543826-2543827|-/C|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	476.284734	950.554916	-0.15057	-7.1714E-05	0.63561	0.00030273	0.48504	0.00023102	476.28484144252155	93.315	1.0339	92.147	91.855	92.889	-1.168	0.049737	0.00067749	NaN	31.955	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21739	+		28422	15708	23298	23325							0.07766064168470166
LDRAPALPAL	10	Unmodified	_LDRAPALPAL_					0	0	0		ENST00000263026.9_1_16:22217644-22236999:+|nuORF	ENST00000263026.9_1_16:22217644-22236999:+|nuORF	ENST00000263026.9_1_16:22217644-22236999:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	518.8115844726562	2	518.811116	1035.60768	0.088256	4.5788E-05	-0.5995	-0.00031103	-0.51125	-0.00026524	518.8107342114864	98.351	1.6273	96.591	95.722	97.349	-1.7595					39	20	2	0	0	0	0.50999	1	6577	6577		52.937	3.4952	1	724000			28423	9904	23299	23326	31676	31676					0.09130022231261137
LDRAPGSADL	10	Unmodified	_LDRAPGSADL_					0	0	0			REV__ENSG00000167600|ENST00000310054|CYP2S1	REV__ENSG00000167600|ENST00000310054|CYP2S1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.3028259277344	2	507.764363	1013.51417	-0.88664	-0.0004502	-1.3607	-0.00069091	-2.2473	-0.0011411	507.7634370051108	91.905	0.65721	89.362	89.012	89.669	-2.5425					17	12	2	0	0	0	0.026681	1	7927	7927		44.377	25.274	1	21920	+		28424	21289	23300	23327	31677	31677					0.007956780581821477
LDRCSALEVE	10	Unmodified	_LDRCSALEVE_					0	0	0		ENST00000558180.2_1_16:54318156-54318291:-|nuORF	ENST00000558180.2_1_16:54318156-54318291:-|nuORF	ENST00000558180.2_1_16:54318156-54318291:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	567.7767944335938	2	567.776613	1133.53867	-0.86752	-0.00049256	1.2511	0.00071033	0.38356	0.00021778	567.7771994508223	121.62	2.1249	121.42	121.15	123.27	-0.19719					95	42	4	0	0	0	0.30325	1	11763	11763		80.455	0.74203	1	400470			28425	13694	23301	23328	31678	31678					-0.022754298506015402
LDREDILL	8	Unmodified	_LDREDILL_					0	0	0		tr|A0A7D6VSN2|A0A7D6VSN2_9CLOTDUF47domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05305PE=3SV=1	tr|A0A7D6VSN2|A0A7D6VSN2_9CLOTDUF47domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05305PE=3SV=1	tr|A0A7D6VSN2|A0A7D6VSN2_9CLOTDUF47domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05305PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.7812805175781	2	493.779482	985.544411	-0.6596	-0.0003257	0.16657	8.2248E-05	-0.49303	-0.00024345	493.779465098626	65.75	1.3135	62.264	61.938	63.251	-3.4854					70	26	4	0	0	0	0.60331	1	4761	4761		63.306	0	1	877510			28426	35039	23302	23329	31679	31679					0.05106036723384477
LDREMEEIRV	10	Unmodified	_LDREMEEIRV_					0	0	0			REV__ENSG00000107554|ENST00000324109|DNMBP	REV__ENSG00000107554|ENST00000324109|DNMBP	MULTI-MSMS	OvCa9_classI_Rep2	2	645.3251342773438	2	645.329544	1288.64454	-1.4341	-0.00092546	-3.6114	-0.0023305	-5.0455	-0.003256	645.327117611008	98.778	3.0684	97.885	96.974	100.04	-0.89305					168	61	4	0	0	0	0.73063	1	8947	8947		27.047	0.3544	1	979390	+		28427	16323	23303	23330	31680	31680					0.01175905994864479
LDRETEEL	8	Unmodified	_LDRETEEL_					0	0	0		ENSG00000107223|ENST00000224073|EDF1;nc|ENSG00000107223|O60869-2|EDF1;nc|ENSG00000107223|O60869-3|EDF1	ENSG00000107223|ENST00000224073|EDF1	ENSG00000107223|ENST00000224073|EDF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.7496643066406	2	502.748379	1003.4822	-0.1666	-8.3757E-05	-0.41521	-0.00020875	-0.58181	-0.0002925	502.74803794516146	60.208	1.5341	56.778	56.504	58.038	-3.43					59	30	3	0	0	0	0.4531	1	4073	4073		82.241	0	1	445540			28428	2597	23304	23331	31681	31681					-0.019397344156004692
LDRETEEL	8	Unmodified	_LDRETEEL_					0	0	0		ENSG00000107223|ENST00000224073|EDF1;nc|ENSG00000107223|O60869-2|EDF1;nc|ENSG00000107223|O60869-3|EDF1	ENSG00000107223|ENST00000224073|EDF1	ENSG00000107223|ENST00000224073|EDF1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	502.748379	1003.4822	-1.0678	-0.00053682	0.658	0.00033081	-0.40978	-0.00020602	502.7486482799583	59.827	0.98658	57.057	56.62	57.606	-2.7702	0.13973	0.00047314	NaN	82.241	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92969			28429	2597	23304	23331							-0.019397344156004692
LDRFYNADI	9	Unmodified	_LDRFYNADI_					0	0	0		ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	MULTI-MSMS	OvCa99_classI_Rep5	1	563.7803344726562	2	563.780013	1125.54547	0.41163	0.00023207	-2.2927	-0.0012926	-1.8811	-0.0010605	563.7786191033973	68.924	0.86901	68.924	68.564	69.433	0					45	20	4	0	0	0	0.3076	1	6560	6560		62.107	10.915	1	2615800			28430	8712	23305	23332	31682	31682					-0.012277489077177961
LDRHVFIDL	9	Unmodified	_LDRHVFIDL_					0	0	0		SPG7|p.L543Hfs*33|1|0.32|ENSG00000197912|chr16:89548077-89548078|-/A|frameshift_variant;ENSG00000197912|ENST00000645818|SPG7;ENST00000563218.5_1_16:89599028-89614565:+|nuORF	SPG7|p.L543Hfs*33|1|0.32|ENSG00000197912|chr16:89548077-89548078|-/A|frameshift_variant	SPG7|p.L543Hfs*33|1|0.32|ENSG00000197912|chr16:89548077-89548078|-/A|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.7738037109375	2	564.314023	1126.61349	0.2902	0.00016376	-3.5089	-0.0019801	-3.2187	-0.0018163	564.3117048271988	67.522	0.54757	67.522	67.255	67.803	0					20	13	2	0	0	0	0.027462	1	6340	6340		37.159	1.5408	1	592070			28431	8762	23306	23333	31683	31683					0.055251207429591886
LDRIINLQ	8	Unmodified	_LDRIINLQ_					0	0	0			REV__tr|A0A553SS25|A0A553SS25_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02295PE=4SV=1	REV__tr|A0A553SS25|A0A553SS25_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02295PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	492.7954406738281	2	492.795466	983.57638	-0.61364	-0.0003024	0.50992	0.00025129	-0.10372	-5.1115E-05	492.7955881517548	74.379	1.8789	71.969	71.499	73.378	-2.4106					135	37	6	0	0	0	0.61436	1	3699	3699		60.972	9.7792	1	461870	+		28432	30792	23307	23334	31684	31684					0.08393449197183145
LDRIKQPM	8	Unmodified	_LDRIKQPM_					0	0	0		tr|A0A7D6VSL7|A0A7D6VSL7_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23255PE=4SV=1	tr|A0A7D6VSL7|A0A7D6VSL7_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23255PE=4SV=1	tr|A0A7D6VSL7|A0A7D6VSL7_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23255PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.8068542480469	2	500.784044	999.553536	1.6569	0.00082977	0.59555	0.00029824	2.2525	0.001128	500.78376285764335	127.86	0.50818	127.86	127.58	128.09	0					12	10	2	0	0	0	0.028476	1	14822	14822		30.504	0	1	31576			28433	35035	23308	23335	31685	31685					0.05374106808073975
LDRINPQL	8	Unmodified	_LDRINPQL_					0	0	0		tr|A0A7D7A391|A0A7D7A391_9CLOTTransposaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20770PE=4SV=1	tr|A0A7D7A391|A0A7D7A391_9CLOTTransposaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20770PE=4SV=1	tr|A0A7D7A391|A0A7D7A391_9CLOTTransposaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20770PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	484.78070068359375	2	484.779816	967.545079	2.1213	0.0010284	0.29639	0.00014369	2.4177	0.0011721	484.7796352860423	77.147	1.0436	77.147	76.757	77.801	0					50	24	3	0	0	0	0.26545	1	7765	7765		113.41	8.665	1	1604800			28434	36108	23309	23336	31686	31686					0.06000876163091107
LDRKLSFSH	9	Unmodified	_LDRKLSFSH_					0	0	0		ENSG00000249481|ENST00000674044|SPATS1	ENSG00000249481|ENST00000674044|SPATS1	ENSG00000249481|ENST00000674044|SPATS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.8138427734375	2	551.803823	1101.59309	0.97705	0.00053914	-0.30345	-0.00016745	0.67359	0.00037169	551.8037775196331	81.546	0.73098	81.546	81.248	81.979	0					52	17	4	0	0	0	0.027462	1	8365	8365		23.042	0	1	7145000			28435	9410	23310	23337	31687	31687					0.046359500831158584
LDRKYLLA	8	Unmodified	_LDRKYLLA_					0	0	0			REV__TNPO3-DYM|1|fusion	REV__TNPO3-DYM|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	496.3016662597656	2	496.300384	990.586216	1.2461	0.00061845	-1.3256	-0.00065787	-0.079436	-3.9424E-05	496.29955522437075	123.03	1.3483	121.99	121.68	123.03	-1.0377					64	25	3	0	0	0	0.73494	1	9527	9527		34.173	0.65696	1	228980	+		28436	19753	23311	23338	31688	31688					0.09054637202564209
LDRLASRN	8	Unmodified	_LDRLASRN_					0	0	0		tr|A0A553SQG8|A0A553SQG8_NIACIYbfB/YjiJfamilyMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_07620PE=4SV=1	tr|A0A553SQG8|A0A553SQG8_NIACIYbfB/YjiJfamilyMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_07620PE=4SV=1	tr|A0A553SQG8|A0A553SQG8_NIACIYbfB/YjiJfamilyMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_07620PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.770263671875	2	472.76724	943.519927	0.56045	0.00026496	3.7091	0.0017535	4.2696	0.0020185	472.7689761506423	77.711	0.96806	74.894	74.681	75.649	-2.8165					39	19	4	0	0	0	0.67872	1	6232	6232		47.657	0	1	413490			28437	34160	23312	23339	31689	31689					0.04590821360523023
LDRLASRN	8	Unmodified	_LDRLASRN_					0	0	0		tr|A0A553SQG8|A0A553SQG8_NIACIYbfB/YjiJfamilyMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_07620PE=4SV=1	tr|A0A553SQG8|A0A553SQG8_NIACIYbfB/YjiJfamilyMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_07620PE=4SV=1	tr|A0A553SQG8|A0A553SQG8_NIACIYbfB/YjiJfamilyMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_07620PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	472.76724	943.519927	-0.70261	-0.00033217	4.6722	0.0022089	3.9696	0.0018767	472.76934218943376	76.718	1.2504	74.928	74.372	75.623	-1.7894	0.01691	0.00043999	NaN	47.657	43	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122730			28438	34160	23312	23339							0.04590821360523023
LDRLKVLMQ	9	Unmodified	_LDRLKVLMQ_					0	0	0		nc|ENSG00000148339|Q6KCM7-2|SLC25A25;ENSG00000148339|ENST00000373069|SLC25A25;nc|ENSG00000148339|Q6KCM7-6|SLC25A25;nc|ENSG00000148339|Q6KCM7|SLC25A25;nc|ENSG00000148339|Q6KCM7-4|SLC25A25;nc|ENSG00000148339|Q6KCM7-5|SLC25A25	nc|ENSG00000148339|Q6KCM7-2|SLC25A25	nc|ENSG00000148339|Q6KCM7-2|SLC25A25	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.3355102539062	2	558.333901	1114.65325	1.418	0.00079173	1.9286	0.0010768	3.3467	0.0018686	558.3348203882426	32.25	1.185	29.555	28.968	30.153	-2.6954					65	35	2	0	0	0	0.71901	1	767	767		11.511	0	1	36609			28439	5401	23313	23340	31690	31690					0.10050924422012031
LDRLNFTY	8	Unmodified	_LDRLNFTY_					0	0	0			REV__CACNA1D-DNAH1|1|fusion;REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__CACNA1D-DNAH1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.2733764648438	2	521.271824	1040.5291	-1.2873	-0.00067101	4.131	0.0021533	2.8437	0.0014823	521.2737458464608	73.449	1.4837	70.053	69.688	71.172	-3.3961					80	30	5	0	0	0	0.71267	1	5711	5711		40.778	5.1599	1	856360	+		28440	15726;18203	23314	23341	31691	31691					0.010451699261921021
LDRLNRSPPA	10	Unmodified	_LDRLNRSPPA_					0	0	0			REV__ENST00000556356.1_1_12:57597999-57598570:+|nuORF	REV__ENST00000556356.1_1_12:57597999-57598570:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.3123779296875	2	569.820004	1137.62546	1.0763	0.00061331	0.65008	0.00037043	1.7264	0.00098374	569.8206619329561	156.11	0.40506	156.11	155.89	156.29	0					11	7	2	0	0	0	0.026849	1	18268	18268		32.812	4.7309	1	36062	+		28441	27556	23315	23342	31692	31692					0.06214737486152444
LDRLQPICP	9	Unmodified	_LDRLQPICP_					0	0	0		ENSG00000249853|ENST00000312719|HS3ST5;HS3ST5|p.Y170Tfs*5|1|0.09|ENSG00000249853|chr6:114057790-114057791|-/CTGGT|frameshift_variant	ENSG00000249853|ENST00000312719|HS3ST5	ENSG00000249853|ENST00000312719|HS3ST5	MULTI-MSMS	OvCa9_classI_Rep2	2	527.7893676757812	2	527.789327	1053.5641	-0.74734	-0.00039444	0.47	0.00024806	-0.27734	-0.00014638	527.7894834080746	69.548	1.3006	66.928	66.615	67.916	-2.6203					64	25	3	0	0	0	0.35444	1	5521	5521		56.721	3.7844	1	501900			28442	9413	23316	23343	31693	31693					0.03946089462488089
LDRLQPICP	9	Unmodified	_LDRLQPICP_					0	0	0		ENSG00000249853|ENST00000312719|HS3ST5;HS3ST5|p.Y170Tfs*5|1|0.09|ENSG00000249853|chr6:114057790-114057791|-/CTGGT|frameshift_variant	ENSG00000249853|ENST00000312719|HS3ST5	ENSG00000249853|ENST00000312719|HS3ST5	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.789306640625	2	527.789327	1053.5641	-1.4516	-0.00076615	1.0873	0.00057385	-0.36436	-0.0001923	527.7898436298075	70.538	1.5567	67.057	66.688	68.245	-3.4812					78	31	3	0	0	0	0.28934	1	5294	5294		64.207	2.0999	1	2116500			28443	9413	23316	23343	31694	31694					0.03946089462488089
LDRPGLSQ	8	Unmodified	_LDRPGLSQ_					0	0	0		nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.7192687988281	2	443.243067	884.47158	-0.38889	-0.00017237	-0.1826	-8.0937E-05	-0.57149	-0.00025331	443.24248492447543	46.96	0.87643	43.888	43.189	44.065	-3.0724					21	16	2	0	0	0	0.028476	1	2471	2471		23.042	0	1	17853			28444	5408	23317	23344	31695	31695					0.024723277206248895
LDRQFNKN	8	Unmodified	_LDRQFNKN_					0	0	0			REV__ENSG00000164128|ENST00000296533|NPY1R	REV__ENSG00000164128|ENST00000296533|NPY1R	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.2996826171875	2	517.772522	1033.53049	-1.4153	-0.00073282	1.0985	0.00056877	-0.31683	-0.00016405	517.7729648678517	118.46	0.84175	117.11	116.89	117.73	-1.3444					25	15	2	0	0	0	0.028476	1	11122	11122		47.916	9.1095	1	55736	+		28445	20947	23318	23345	31696	31696					0.01506804014957197
LDRQFNKN	8	Unmodified	_LDRQFNKN_					0	0	0			REV__ENSG00000164128|ENST00000296533|NPY1R	REV__ENSG00000164128|ENST00000296533|NPY1R	MULTI-MATCH	OvCa9_classI_Rep3	3		2	517.772522	1033.53049	0.17226	8.9192E-05	-1.4524	-0.00075203	-1.2802	-0.00066284	517.7715296899371	118.2	1.0901	117.17	116.54	117.63	-1.0324	0.029652	-0.0017438	NaN	47.916	30	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70563	+		28446	20947	23318	23345							0.01506804014957197
LDRSAALCIP	10	Unmodified	_LDRSAALCIP_					0	0	0			REV__nc|ENSG00000149090|Q6UXH9-3|PAMR1	REV__nc|ENSG00000149090|Q6UXH9-3|PAMR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.7991943359375	2	529.786784	1057.55902	-0.016261	-8.6146E-06	-0.078785	-4.1739E-05	-0.095046	-5.0354E-05	529.787963596754	37.477	0.29913	34.584	34.492	34.791	-2.8925					8	5	2	0	0	0	0.026782	1	1395	1395		23.523	0	1	10565	+		28447	20142	23319	23346	31697	31697					0.03253785599872572
LDRSKDQHRI	10	Unmodified	_LDRSKDQHRI_					0	0	0			REV__ENST00000447282.5_1_12:53874154-53874502:+|nuORF	REV__ENST00000447282.5_1_12:53874154-53874502:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	423.23504638671875	3	423.233704	1266.67928	-0.30161	-0.00012765	2.5652	0.0010857	2.2636	0.00095801	423.23451237461825	42.437	0.42319	42.437	42.286	42.709	0					29	9	4	0	0	0	0.63752	1	2731	2731		37.508	0.98027	1	759760	+		28448	25914	23320	23347	31698	31698					0.05660909917855861
LDRSKDQHRI	10	Unmodified	_LDRSKDQHRI_					0	0	0			REV__ENST00000447282.5_1_12:53874154-53874502:+|nuORF	REV__ENST00000447282.5_1_12:53874154-53874502:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	423.233704	1266.67928	-0.30161	-0.00012765	2.5652	0.0010857	2.2636	0.00095801	423.23451237461825	42.437	0.42319	42.437	42.286	42.709	0	0	0	NaN	37.508	29	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	759760	+		28449	25914	23320	23347							0.05660909917855861
LDRSKQTRSL	10	Unmodified	_LDRSKQTRSL_					0	0	0			REV__nc|ENSG00000108395|O94972-2|TRIM37	REV__nc|ENSG00000108395|O94972-2|TRIM37	MULTI-MSMS	OvCa9_classI_Rep2	2	401.8998107910156	3	401.898321	1202.67313	0.43726	0.00017574	3.2457	0.0013044	3.683	0.0014802	401.8994230610732	50.361	1.934	47.567	46.686	48.62	-2.794					100	38	5	0	0	0	0.4826	1	3239	3239		56.632	17.879	1	232540	+		28450	17886	23321	23348	31699	31699					0.07990391686325893
LDRSKQTRSL	10	Unmodified	_LDRSKQTRSL_					0	0	0			REV__nc|ENSG00000108395|O94972-2|TRIM37	REV__nc|ENSG00000108395|O94972-2|TRIM37	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	401.898321	1202.67313	1.0097	0.0004058	2.2527	0.00090536	3.2624	0.0013112	401.8991473489617	50.848	1.1118	47.674	47.36	48.472	-3.1734	0.053908	-0.00045173	NaN	56.632	50	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209480	+		28451	17886	23321	23348							0.07990391686325893
LDRSLALGR	9	Unmodified	_LDRSLALGR_					0	0	0		RAB25|p.S194Kfs*?|1|0.07|ENSG00000132698|chr1:156070225-156070226|-/AAGATCCTATG|frameshift_variant	RAB25|p.S194Kfs*?|1|0.07|ENSG00000132698|chr1:156070225-156070226|-/AAGATCCTATG|frameshift_variant	RAB25|p.S194Kfs*?|1|0.07|ENSG00000132698|chr1:156070225-156070226|-/AAGATCCTATG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.30499267578125	2	500.79854	999.582528	-1.1805	-0.00059121	-4.1261	-0.0020664	-5.3066	-0.0026576	500.7935714745533	96.392	1.0164	94.563	94.123	95.14	-1.8286					59	19	5	0	0	0	0.027461	1	6325	6325		25.574	0	1	65058			28452	15537	23322	23349	31700	31700					0.08271967428709104
LDRSSWIYS	9	Unmodified	_LDRSSWIYS_					0	0	0		ENST00000535387.5_2_9:95072482-95076565:-|nuORF	ENST00000535387.5_2_9:95072482-95076565:-|nuORF	ENST00000535387.5_2_9:95072482-95076565:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	563.780029296875	2	563.780013	1125.54547	0.41163	0.00023207	-2.2927	-0.0012926	-1.8811	-0.0010605	563.7786191033973	68.924	0.86901	68.924	68.564	69.433	0					45	20	4	0	0	0	0.27001	1	6529	6529		66.429	7.6473	1	2615800			28453	13374	23323	23350	31701	31701					-0.012277489076950587
LDRTLQTA	8	Unmodified	_LDRTLQTA_					0	0	0			REV__ENSG00000177542|ENST00000628067|SLC25A22	REV__ENSG00000177542|ENST00000628067|SLC25A22	MULTI-MSMS	OvCa9_classI_Rep4_	4	459.2572021484375	2	459.256174	916.497795	-0.14326	-6.5794E-05	-0.61921	-0.00028438	-0.76248	-0.00035017	459.25583040570086	47.417	1.3179	44.311	44.032	45.35	-3.1055					78	25	4	0	0	0	0.66057	1	2596	2596		51.335	0	1	1474600	+		28454	22013	23324	23351	31702	31702					0.03620596892085359
LDRTRISP	8	Unmodified	_LDRTRISP_					0	0	0		ENST00000502125.6_1_15:96833953-96870491:-|nuORF	ENST00000502125.6_1_15:96833953-96870491:-|nuORF	ENST00000502125.6_1_15:96833953-96870491:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.2798767089844	2	479.277441	956.540328	1.2379	0.0005933	2.8882	0.0013843	4.1261	0.0019776	479.2787787537371	96.937	2.2657	94.512	93.76	96.025	-2.4256					110	44	4	0	0	0	0.35821	1	8564	8564		96.19	19.344	1	2968100			28455	12845	23325	23352	31703	31703					0.06031992020314192
LDRVGLVRS	9	Unmodified	_LDRVGLVRS_					0	0	0			REV__ENST00000595800.1_1_19:7711991-7712510:+|nuORF	REV__ENST00000595800.1_1_19:7711991-7712510:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.6207275390625	2	507.806365	1013.59818	0.25642	0.00013021	-0.58661	-0.00029788	-0.33019	-0.00016767	507.80635463586765	57.796	0.50266	57.796	57.65	58.153	0					18	11	2	0	0	0	0.027462	1	4870	4870		17.468	0	1	383660	+		28456	27991	23326	23353	31704	31704					0.09192253945775519
LDRVKELF	8	Unmodified	_LDRVKELF_					0	0	0			REV__nc|ENSG00000143921|Q9H221-2|ABCG8	REV__nc|ENSG00000143921|Q9H221-2|ABCG8	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.29864501953125	2	510.297842	1018.58113	-0.54448	-0.00027785	0.43106	0.00021997	-0.11342	-5.7879E-05	510.29735156137053	101.7	1.1457	99.43	99.304	100.45	-2.2665					32	21	3	0	0	0	0.59148	1	9154	9154		65.803	2.4969	1	518170	+		28457	19874	23327	23354	31705	31705					0.07258333339950696
LDRVKEYE	8	Unmodified	_LDRVKEYE_					0	0	0		nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1	nc|ENSG00000197283|Q96PV0-3|SYNGAP1	nc|ENSG00000197283|Q96PV0-3|SYNGAP1	MULTI-SECPEP	OvCa9_classI_Rep3	3	527.272705078125	2	526.274564	1050.53457	-1.2718	-0.00066932	0.31574	0.00016617	-0.95606	-0.00050315	526.7757548407805	97.209	1.6209	95.449	94.59	96.211	-1.7595					54	31	2	0	0	0	0.028476	1	6410	6410		34.173	0	1	88210			28458	8697	23328	23355	31706	31706					0.011328487179980584
LDRWQLGAL	9	Unmodified	_LDRWQLGAL_					0	0	0			REV__ENST00000561302.5_1_15:76430142-76521275:+|nuORF	REV__ENST00000561302.5_1_15:76430142-76521275:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.819580078125	2	536.300916	1070.58728	-0.036969	-1.9826E-05	1.3967	0.00074905	1.3597	0.00072922	536.3020165606765	68.264	0.58829	64.774	64.574	65.163	-3.4902					19	11	3	0	0	0	0.027449	1	5045	5045		31.955	0	1	53611	+		28459	27633	23329	23356	31707	31707					0.05480851571473977
LDRYLTSP	8	Unmodified	_LDRYLTSP_					0	0	0			REV__ENSG00000186907|ENST00000335099|RTN4RL2	REV__ENSG00000186907|ENST00000335099|RTN4RL2	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.7603759765625	2	482.758549	963.502546	-0.19275	-9.3051E-05	3.4304	0.001656	3.2376	0.001563	482.76002636237183	58.142	1.7602	54.797	54.24	56	-3.3449					64	34	4	0	0	0	0.65062	1	3777	3777		53.351	0	1	733120	+		28460	22620	23330	23357	31708	31708					0.01933481034848228
LDSAIQKWIQ	10	Unmodified	_LDSAIQKWIQ_					0	0	0			REV__ENSG00000263002|ENST00000426739|ZNF234	REV__ENSG00000263002|ENST00000426739|ZNF234	MULTI-SECPEP	OvCa9_classI_Rep3	3	601.79296875	2	601.332413	1200.65027	1.5964	0.00095998	-1.4958	-0.00089946	0.10065	6.0525E-05	601.331926679779	78.425	0.30042	76.073	75.9	76.2	-2.3527					7	5	2	0	0	0	0.026577	1	4161	4161		49.536	0	1	13087	+		28461	23577	23331	23358	31709	31709					0.057973725688498234
LDSHKKTSVL	10	Unmodified	_LDSHKKTSVL_					0	0	0		nc|ENSG00000155719|Q7RTW8-2|OTOA;nc|ENSG00000155719|Q7RTW8-4|OTOA;ENSG00000155719|ENST00000646100|OTOA;nc|ENSG00000155719|Q7RTW8|OTOA	nc|ENSG00000155719|Q7RTW8-2|OTOA	nc|ENSG00000155719|Q7RTW8-2|OTOA	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.3255004882812	2	564.324588	1126.63462	0.97654	0.00055109	-1.4497	-0.00081813	-0.47321	-0.00026704	564.3237500544434	102.85	2.5142	100.65	100.25	102.77	-2.1994					128	47	4	0	0	0	0.47142	1	9329	9329		58.23	10.573	1	5226800			28462	5797	23332	23359	31710	31710					0.07637086051818187
LDSIKFTFN	9	Unmodified	_LDSIKFTFN_					0	0	0			REV__nc|ENSG00000014919|Q7KZN9-2|COX15	REV__nc|ENSG00000014919|Q7KZN9-2|COX15	MULTI-MSMS	OvCa99_classI_Rep5	1	542.7888793945312	2	542.787307	1083.56006	2.4999	0.0013569	-0.90673	-0.00049216	1.5932	0.00086477	542.7871930585201	121.31	0.74478	121.31	121.06	121.8	0					23	16	2	0	0	0	0.2422	1	13967	13967		69.628	2.134	1	224310	+		28463	28707	23333	23360	31711	31711					0.02162323240418118
LDSINYDNIL	10	Unmodified	_LDSINYDNIL_					0	0	0			REV__tr|A0A7D6VMP6|A0A7D6VMP6_9CLOTUvrABCsystemproteinAOS=ClostridiumintestinaleOX=36845GN=HZF06_12625PE=3SV=1	REV__tr|A0A7D6VMP6|A0A7D6VMP6_9CLOTUvrABCsystemproteinAOS=ClostridiumintestinaleOX=36845GN=HZF06_12625PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.3234252929688	2	590.298236	1178.58192	2.1108	0.001246	0.24326	0.00014359	2.3541	0.0013896	590.2983300422314	85.797	0.32917	85.797	85.624	85.954	0					12	7	2	0	0	0	0.026849	1	9005	9005		25.574	9.9322	1	337250	+		28464	31142	23334	23361	31712	31712					-0.00022916801663086517
LDSIQCHVL	9	Carbamidomethyl (C)	_LDSIQC(Carbamidomethyl (C))HVL_	LDSIQC(1)HVL		LDSIQC(72)HVL		0	1	0		ENST00000366554.2_1_1:241757265-241757319:-|nuORF	ENST00000366554.2_1_1:241757265-241757319:-|nuORF	ENST00000366554.2_1_1:241757265-241757319:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.7888793945312	2	542.776416	1083.53828	2.5063	0.0013604	-3.2969	-0.0017895	-0.79058	-0.00042911	543.2776451414106	121.33	0.37414	121.33	121.15	121.52	0					11	8	2	0	0	0	0.027353	1	13967	13967		71.877	17.101	1	39183			28465	10819	23335	23362	31713	31713	111				-0.00014804779789301392
LDSISRKS	8	Unmodified	_LDSISRKS_					0	0	0		tr|A0A7D6VUC0|A0A7D6VUC0_9CLOTGTPpyrophosphokinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11030PE=4SV=1	tr|A0A7D6VUC0|A0A7D6VUC0_9CLOTGTPpyrophosphokinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11030PE=4SV=1	tr|A0A7D6VUC0|A0A7D6VUC0_9CLOTGTPpyrophosphokinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11030PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	453.2557678222656	2	453.256174	904.497795	0.87584	0.00039698	-0.9165	-0.00041541	-0.040654	-1.8427E-05	453.2556671396332	49.258	2.2776	46.498	46.078	48.356	-2.7603					121	45	5	0	0	0	0.71369	1	3144	3144		40.573	2.7611	1	1197000			28466	35177	23336	23363	31714	31714					0.0417259689210141
LDSLHNGLI	9	Unmodified	_LDSLHNGLI_					0	0	0		ENST00000323116.9_2_3:182635813-182635903:+|nuORF	ENST00000323116.9_2_3:182635813-182635903:+|nuORF	ENST00000323116.9_2_3:182635813-182635903:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.73870849609375	2	491.271824	980.529095	0.21011	0.00010322	-0.91839	-0.00045118	-0.70828	-0.00034796	491.2711738350188	78.021	1.101	75.204	74.825	75.926	-2.8165					30	22	2	0	0	0	0.027462	1	6347	6347		34.173	0	1	48811			28467	10388	23337	23364	31715	31715					0.03805169926192775
LDSLHNGLI	9	Unmodified	_LDSLHNGLI_					0	0	0		ENST00000323116.9_2_3:182635813-182635903:+|nuORF	ENST00000323116.9_2_3:182635813-182635903:+|nuORF	ENST00000323116.9_2_3:182635813-182635903:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	491.271824	980.529095	0.085702	4.2103E-05	-4.1843	-0.0020556	-4.0986	-0.0020135	491.2715448244769	77.23	1.3543	75.441	74.635	75.99	-1.7894	0.11814	-0.0028624	NaN	34.173	38	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18974			28468	10388	23337	23364							0.03805169926192775
LDSLTIIFY	9	Unmodified	_LDSLTIIFY_					0	0	0			REV__nc|ENSG00000143771|Q9P003-2|CNIH4	REV__nc|ENSG00000143771|Q9P003-2|CNIH4	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.7931518554688	2	542.799883	1083.58521	1.9261	0.0010455	2.905	0.0015768	4.831	0.0026223	542.8008855676354	78.181	0.4902	78.181	77.844	78.335	0					17	11	2	0	0	0	0.027449	1	7873	7873		40.573	20.576	1	489450	+		28469	19865	23338	23365	31716	31716					0.04676378042995566
LDSLVLQLL	9	Unmodified	_LDSLVLQLL_					0	0	0		ENST00000465315.1_1_2:131099551-131099698:-|nuORF;ENSG00000136710|ENST00000259229|CCDC115	ENST00000465315.1_1_2:131099551-131099698:-|nuORF	ENST00000465315.1_1_2:131099551-131099698:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.3153381347656	2	507.3157	1012.61685	-1.2635	-0.00064101	0.79123	0.00040141	-0.4723	-0.0002396	507.31593965363254	118.1	1.9854	116.76	116.42	118.4	-1.3444					95	37	4	0	0	0	0.40667	1	11105	11105		51.335	0	1	576430			28470	4505	23339	23366	31717	31717					0.11104370796954299
LDSNDSEIE	9	Unmodified	_LDSNDSEIE_					0	0	0		nc|ENSG00000119321|Q5T1M5-3|FKBP15;FKBP15|p.E679Rfs*44|1|0.14|ENSG00000119321|chr9:113178681-113178681|C/-|frameshift_variant;nc|ENSG00000119321|Q5T1M5-2|FKBP15;ENSG00000119321|ENST00000238256|FKBP15	nc|ENSG00000119321|Q5T1M5-3|FKBP15	nc|ENSG00000119321|Q5T1M5-3|FKBP15	MULTI-MSMS	OvCa99_classI_Rep5	1	511.21990966796875	2	511.219651	1020.42475	1.1854	0.00060598	-0.75284	-0.00038487	0.43251	0.00022111	511.21914277262067	138.94	1.573	138.94	138.64	140.22	0					62	32	3	0	0	0	0.24951	1	16227	16227		68.787	12.066	1	545500			28471	3353	23340	23367	31718	31718					-0.08464621411849294
LDSPKRKRPK	10	Unmodified	_LDSPKRKRPK_					0	0	0		nc|ENSG00000111877|Q9NXL9-4|MCM9;ENSG00000111877|ENST00000619706|MCM9	nc|ENSG00000111877|Q9NXL9-4|MCM9	nc|ENSG00000111877|Q9NXL9-4|MCM9	MULTI-SECPEP	OvCa9_classI_Rep2	2	409.9046325683594	3	408.922689	1223.74624	0.49881	0.00020398	-0.18672	-7.6354E-05	0.31209	0.00012762	408.9224553749321	69.169	1.1959	66.549	66.217	67.413	-2.6203					32	23	2	0	0	0	0.027325	1	5515	5515		11.097	0	1	57539			28472	2860	23341	23368	31719	31719					0.1433156519960903
LDSRYVTLT	9	Unmodified	_LDSRYVTLT_					0	0	0		ENSG00000163449|ENST00000437356|TMEM169	ENSG00000163449|ENST00000437356|TMEM169	ENSG00000163449|ENST00000437356|TMEM169	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.2904663085938	2	534.290214	1066.56587	-2.008	-0.0010729	1.9908	0.0010637	-0.017157	-9.1671E-06	534.2911228670016	100.1	1.7796	97.77	97.417	99.197	-2.3253					73	35	3	0	0	0	0.1944	1	8950	8950		77.318	11.42	1	519230			28473	6306	23342	23369	31720	31720					0.03525421752101465
LDSRYVTLT	9	Unmodified	_LDSRYVTLT_					0	0	0		ENSG00000163449|ENST00000437356|TMEM169	ENSG00000163449|ENST00000437356|TMEM169	ENSG00000163449|ENST00000437356|TMEM169	MULTI-MATCH	OvCa9_classI_Rep2	2		2	534.290214	1066.56587	-1.4976	-0.00080013	1.2142	0.00064871	-0.28341	-0.00015142	534.2907302855571	98.775	2.3853	97.882	97.558	99.943	-0.89305	0.0039173	-2.1845E-05	NaN	77.318	97	47	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	452990			28474	6306	23342	23369							0.03525421752101465
LDSRYVTLT	9	Unmodified	_LDSRYVTLT_					0	0	0		ENSG00000163449|ENST00000437356|TMEM169	ENSG00000163449|ENST00000437356|TMEM169	ENSG00000163449|ENST00000437356|TMEM169	MULTI-MATCH	OvCa9_classI_Rep3	3		2	534.290214	1066.56587	0.30379	0.00016231	-0.43237	-0.00023101	-0.12859	-6.8702E-05	534.2898088129127	99.54	2.2557	97.855	97.373	99.629	-1.685	-0.022793	-0.0017813	NaN	77.318	76	44	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	507440			28475	6306	23342	23369							0.03525421752101465
LDSSNTSKHD	10	Unmodified	_LDSSNTSKHD_					0	0	0			REV__nc|ENSG00000147180|Q9Y462|ZNF711	REV__nc|ENSG00000147180|Q9Y462|ZNF711	MULTI-MSMS	OvCa99_classI_Rep5	1	552.2545166015625	2	552.251817	1102.48908	-0.4983	-0.00027519	3.6952	0.0020407	3.1969	0.0017655	552.2537663683548	51.644	1.1918	51.644	51.418	52.61	0					60	27	4	0	0	0	0.44431	1	3991	3991		62.107	5.3864	1	3345400	+		28476	20050	23343	23370	31721	31721					-0.058064215350214
LDSSRFIAQ	9	Unmodified	_LDSSRFIAQ_					0	0	0		tr|A0A7D6ZRF3|A0A7D6ZRF3_9CLOTBeta-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03595PE=3SV=1	tr|A0A7D6ZRF3|A0A7D6ZRF3_9CLOTBeta-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03595PE=3SV=1	tr|A0A7D6ZRF3|A0A7D6ZRF3_9CLOTBeta-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03595PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.7760009765625	2	518.774731	1035.53491	-1.0421	-0.00054064	1.1636	0.00060362	0.12141	6.2987E-05	518.7751606740917	69.518	1.1717	66.037	65.762	66.934	-3.4812					59	23	3	0	0	0	0.091859	1	5218	5218		99.375	14.015	1	643580			28477	35714	23344	23371	31722	31722					0.018562684378366612
LDSSTPLKL	9	Unmodified	_LDSSTPLKL_					0	0	0			REV__ENST00000216039.9_1_22:39083023-39083575:-|nuORF	REV__ENST00000216039.9_1_22:39083023-39083575:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.2829895019531	2	487.281857	972.549162	-0.75313	-0.00036699	0.06037	2.9417E-05	-0.69276	-0.00033757	487.28181617652046	95.712	2.666	93.287	92.554	95.22	-2.4256					181	52	5	0	0	0	0.068524	1	8457	8457		108.09	1.08	1	3865200	+		28478	23714	23345	23372	31723	31723					0.06178920866148019
LDSSTVTHLF	10	Unmodified	_LDSSTVTHLF_					0	0	0		nc|ENSG00000100902|P60900-2|PSMA6;ENSG00000100902|ENST00000261479|PSMA6;ENST00000554843.5_1_14:35761682-35780127:+|nuORF	nc|ENSG00000100902|P60900-2|PSMA6	nc|ENSG00000100902|P60900-2|PSMA6	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.8287963867188	2	560.287671	1118.56079	-0.54024	-0.00030269	1.7219	0.00096478	1.1817	0.00066209	560.7909223200647	70.207	0.28056	70.207	70.005	70.286	0					10	6	2	0	0	0	0.026688	1	6715	6715		32.812	6.1195	1	571540			28479	2119	23346	23373	31724	31724					0.006251178894899567
LDSTACKITI	10	Unmodified	_LDSTACKITI_					0	0	0		nc|ENSG00000113749|P25021|HRH2;nc|ENSG00000113749|P25021-2|HRH2;ENSG00000113749|ENST00000636584|HRH2	nc|ENSG00000113749|P25021|HRH2	nc|ENSG00000113749|P25021|HRH2	MULTI-MSMS	OvCa99_classI_Rep5	1	532.7874755859375	2	532.78645	1063.55835	0.031521	1.6794E-05	-3.5162	-0.0018734	-3.4846	-0.0018566	532.7845997903096	70.969	1.7607	70.969	70.447	72.208	0					103	43	3	0	0	0	0.38315	1	6900	6900		70.816	3.3225	1	58304000			28480	2992	23347	23374	31725	31725					0.029109461601592557
LDSVRGFT	8	Unmodified	_LDSVRGFT_					0	0	0			REV__ENSG00000108599|ENST00000225737|AKAP10	REV__ENSG00000108599|ENST00000225737|AKAP10	MULTI-MSMS	OvCa99_classI_Rep5	1	447.73785400390625	2	447.737617	893.460681	-0.28536	-0.00012777	0.12764	5.7151E-05	-0.15771	-7.0615E-05	447.73750700236235	65.633	0.91089	65.633	65.111	66.022	0					44	22	3	0	0	0	0.62474	1	6031	6031		58.782	3.2778	1	2318900	+		28481	17897	23348	23375	31726	31726					0.009689253463534442
LDSVRGFT	8	Unmodified	_LDSVRGFT_					0	0	0			REV__ENSG00000108599|ENST00000225737|AKAP10	REV__ENSG00000108599|ENST00000225737|AKAP10	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	447.737617	893.460681	-0.28536	-0.00012777	0.12764	5.7151E-05	-0.15771	-7.0615E-05	447.73750700236235	65.633	0.91089	65.633	65.111	66.022	0	-0.17582	5.357E-05	NaN	58.782	44	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2318900	+		28482	17897	23348	23375							0.009689253463534442
LDSVRGFT	8	Unmodified	_LDSVRGFT_					0	0	0			REV__ENSG00000108599|ENST00000225737|AKAP10	REV__ENSG00000108599|ENST00000225737|AKAP10	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	447.737617	893.460681	-0.38993	-0.00017459	-0.99978	-0.00044764	-1.3897	-0.00062223	447.73661562901265	69.465	0.1964	65.984	65.861	66.057	-3.4812	0.17582	-0.00095601	NaN	58.782	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9396	+		28483	17897	23348	23375							0.009689253463534442
LDSVYSHLPDL	11	Unmodified	_LDSVYSHLPDL_					0	0	0		ENSG00000146072|ENST00000296861|TNFRSF21	ENSG00000146072|ENST00000296861|TNFRSF21	ENSG00000146072|ENST00000296861|TNFRSF21	MULTI-MSMS	OvCa99_classI_Rep5	1	420.215087890625	3	420.215316	1257.62412	-0.19676	-8.268E-05	-0.61235	-0.00025732	-0.80911	-0.00034	420.2150247392154	38.283	1.0771	38.283	37.94	39.017	0					53	23	4	0	0	0	0.62561	1	2159	2159		42.338	3.624	1	1472000			28484	5263	23349	23376	31727	31727					0.005610586067177792
LDSWKKHDS	9	Unmodified	_LDSWKKHDS_					0	0	0		ENSG00000124449|ENST00000244314|IRGC	ENSG00000124449|ENST00000244314|IRGC	ENSG00000124449|ENST00000244314|IRGC	MULTI-SECPEP	OvCa9_classI_Rep2	2	558.3502197265625	2	558.277638	1114.54072	0.94734	0.00052888	-0.99916	-0.00055781	-0.051826	-2.8933E-05	558.2769339150188	81.673	1.5457	80.025	79.415	80.961	-1.6485					62	29	3	0	0	0	0.027441	1	7033	7033		58.782	7.4465	1	63053			28485	3652	23350	23377	31728	31728					-0.011966330504719735
LDSYRYLE	8	Unmodified	_LDSYRYLE_					0	0	0			REV__tr|A0A7D6ZSH6|A0A7D6ZSH6_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15860PE=4SV=1	REV__tr|A0A7D6ZSH6|A0A7D6ZSH6_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15860PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.760986328125	2	529.761289	1057.50803	-0.8333	-0.00044145	-2.9478	-0.0015616	-3.7811	-0.0020031	529.7594544027816	59.043	1.7341	55.651	55.35	57.084	-3.392					75	34	4	0	0	0	0.48084	1	3934	3934		79.451	4.4077	1	508000	+		28486	32187	23351	23378	31729	31729					-0.01842840173321747
LDTARSLSV	9	Unmodified	_LDTARSLSV_					0	0	0			REV__nc|ENSG00000102804|Q15714-4|TSC22D1	REV__nc|ENSG00000102804|Q15714-4|TSC22D1	MULTI-MSMS	OvCa99_classI_Rep5	1	481.2732849121094	2	481.269281	960.52401	-0.74028	-0.00035627	0.44831	0.00021576	-0.29197	-0.00014052	481.2694850107459	49.592	0.87155	49.592	49.33	50.201	0					50	19	4	0	0	0	0.31747	1	3731	3731		60.972	2.742	1	4217900	+		28487	17573	23352	23379	31730	31730					0.04216866063586622
LDTDSLSARR	10	Unmodified	_LDTDSLSARR_					0	0	0		nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4;ENSG00000242419|ENST00000306593|PCDHGC4	nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	nc|ENSG00000242419|Q9Y5F7-2|PCDHGC4	MULTI-MSMS	OvCa99_classI_Rep5	1	567.3024291992188	2	567.299101	1132.58365	-0.21997	-0.00012479	2.7308	0.0015492	2.5108	0.0014244	567.3006852173389	58.912	2.4584	58.912	58.613	61.071	0					174	61	6	0	0	0	0.24425	1	5015	5015		87.696	10.379	1	116410000			28488	9366	23353	23380	31731	31731					0.022661370069499753
LDTETLTK	8	Unmodified	_LDTETLTK_					0	0	0			REV__ENSG00000196576|ENST00000359337|PLXNB2;REV__TUBGCP6-PLXNB2|1|fusion	REV__ENSG00000196576|ENST00000359337|PLXNB2	MULTI-SECPEP	OvCa99_classI_Rep5	1	460.7818298339844	2	460.75039	919.486227	-0.31633	-0.00014575	2.4227	0.0011163	2.1063	0.0009705	460.7515714090815	43.29	0.2501	43.29	43.185	43.435	0					7	5	2	0	0	0	0.028476	1	2849	2849		16.473	6.7675	1	47581	+		28489	22843;32739	23354	23381	31732	31732					0.023263550780825426
LDTFQRKRKLN	11	Unmodified	_LDTFQRKRKLN_					0	0	0		ENSG00000156787|ENST00000287380|TBC1D31;nc|ENSG00000156787|Q96DN5-3|TBC1D31;nc|ENSG00000156787|Q96DN5-2|TBC1D31;ENST00000524307.5_1_8:124089445-124141439:+|nuORF;ENST00000521980.1_1_8:124096343-124109714:+|nuORF;ENST00000518099.5_1_8:124085009-124113262:+|nuORF	ENSG00000156787|ENST00000287380|TBC1D31	ENSG00000156787|ENST00000287380|TBC1D31	MULTI-SECPEP	OvCa9_classI_Rep3	3	473.2850646972656	3	473.612404	1417.81538	-0.015328	-7.2595E-06	-2.4527	-0.0011616	-2.4681	-0.0011689	473.6111627398519	87.684	0.77317	85.508	85.241	86.015	-2.1768					23	14	2	0	0	0	0.025908	1	5256	5256		21.78	19.092	1	33308			28490	5856	23355	23382	31733	31733					0.12318604428492108
LDTGCVAKAKL	11	Unmodified	_LDTGCVAKAKL_					0	0	0			REV__nc|ENSG00000116586|Q9Y2Q5-2|LAMTOR2	REV__nc|ENSG00000116586|Q9Y2Q5-2|LAMTOR2	MULTI-MSMS	OvCa9_classI_Rep3	3	559.81591796875	2	559.815541	1117.61653	-0.97774	-0.00054735	1.3525	0.00075713	0.37473	0.00020978	559.8160584775942	134.25	2.5628	133.13	132.52	135.08	-1.1226					125	51	4	0	0	0	0.60323	1	10829	10829		44.377	0	1	225320	+		28491	28812	23356	23383	31734	31734					0.06242627805431766
LDTHFRLL	8	Unmodified	_LDTHFRLL_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;ZNFX1|p.V1053Afs*12|1|0.06|ENSG00000124201|chr20:49252778-49252779|-/TCTCGGCTCACTGCAACCACCG|frameshift_variant;nc|ENSG00000124201|Q9P2E3-2|ZNFX1;ZNFX1|p.S394Lfs*12|1|0.07|ENSG00000124201|chr20:49270633-49270634|-/ATGTGGCATATATACACCACGGAATACTATGCAGC|frameshift_variant;ZNFX1|p.R534Sfs*17|1|0.07|ENSG00000124201|chr20:49270210-49270211|-/TAGAAACCTAGAGTGAAGGCTCCGTCCCTTG|frameshift_variant	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.8326110839844	2	507.790184	1013.56581	2.6143	0.0013275	0.98556	0.00050046	3.5999	0.001828	507.7895391973648	86.692	0.29068	86.692	86.511	86.801	0					15	6	3	0	0	0	0.028476	1	9150	9150		82.305	2.854	1	312070			28492	3631	23357	23384	31735	31735					0.05957466542747625
LDTILIRRG	9	Unmodified	_LDTILIRRG_					0	0	0		ENST00000537919.5_1_17:40024130-40025012:-|nuORF	ENST00000537919.5_1_17:40024130-40025012:-|nuORF	ENST00000537919.5_1_17:40024130-40025012:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.3091430664062	2	528.82984	1055.64513	-1.0174	-0.00053802	3.3941	0.0017949	2.3767	0.0012569	528.8294798195709	95.618	0.98904	93.79	93.582	94.571	-1.8286					26	19	2	0	0	0	0.027462	1	6326	6326		20.947	0	1	12044			28493	13413	23358	23385	31736	31736					0.11953113496883816
LDTILPSRDDN	11	Unmodified	_LDTILPSRDDN_					0	0	0		ENSG00000038295|ENST00000061240|TLL1;nc|ENSG00000038295|O43897-2|TLL1	ENSG00000038295|ENST00000061240|TLL1	ENSG00000038295|ENST00000061240|TLL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	629.6568603515625	2	629.817324	1257.62009	-0.26433	-0.00016648	2.4114	0.0015188	2.1471	0.0013523	629.8187699394912	38.278	0.63652	38.278	37.983	38.619	0					33	13	4	0	0	0	0.025277	1	2202	2202		47.96	11.513	1	636400			28494	1096	23359	23386	31737	31737					0.0015896911302206718
LDTLLVLGGL	10	Unmodified	_LDTLLVLGGL_					0	0	0			REV__nc|ENSG00000180900|Q14160-2|SCRIB	REV__nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.8315734863281	2	507.3157	1012.61685	2.3072	0.0011705	-0.7711	-0.00039119	1.5361	0.00077928	507.3151945071052	113.18	0.65588	113.18	112.88	113.53	0					33	15	3	0	0	0	0.026635	1	12938	12938		47.657	0	1	1511300	+		28495	22204	23360	23387	31738	31738					0.11104370796954299
LDTLSAIGAL	10	Unmodified	_LDTLSAIGAL_					0	0	0			REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.2826843261719	2	487.281857	972.549162	-0.75313	-0.00036699	0.06037	2.9417E-05	-0.69276	-0.00033757	487.28181617652046	95.712	2.666	93.287	92.554	95.22	-2.4256					181	52	5	0	0	0	0.52321	1	8518	8518		51.335	1.8939	1	3865200	+		28496	20958	23361	23388	31739	31739					0.06178920866148019
LDTMECVLE	9	Unmodified	_LDTMECVLE_					0	0	0		ENST00000488068.5_1_7:143088552-143095662:-|nuORF;ENSG00000146904|ENST00000275815|EPHA1	ENST00000488068.5_1_7:143088552-143095662:-|nuORF	ENST00000488068.5_1_7:143088552-143095662:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.2860717773438	2	526.735568	1051.45658	-1.1633	-0.00061277	1.0275	0.00054124	-0.13581	-7.1538E-05	526.7358516812282	104.12	0.94482	102	101.75	102.69	-2.1192					32	17	3	0	0	0	0.027462	1	9492	9492		45.952	3.4775	1	44904			28497	5316	23362	23389	31740	31740					-0.06708668253895667
LDTMKNRRVQL	11	Unmodified	_LDTMKNRRVQL_					0	0	0			REV__tr|A0A553SHD5|A0A553SHD5_NIACILysine--tRNAligaseOS=NialliacirculansOX=1397GN=lysSPE=3SV=1	REV__tr|A0A553SHD5|A0A553SHD5_NIACILysine--tRNAligaseOS=NialliacirculansOX=1397GN=lysSPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.2373962402344	3	458.594244	1372.7609	-0.14589	-6.6905E-05	-3.8595	-0.0017699	-4.0054	-0.0018368	458.5926239450759	41.044	0.35946	41.044	40.926	41.285	0					17	7	3	0	0	0	0.025864	1	2555	2555		22.562	6.0317	1	82204	+		28498	29792	23363	23390	31741	31741					0.08943269285441602
LDTPELQLLF	10	Unmodified	_LDTPELQLLF_					0	0	0			REV__ENSG00000006611|ENST00000005226|USH1C	REV__ENSG00000006611|ENST00000005226|USH1C	MULTI-MSMS	OvCa9_classI_Rep3	3	594.8280029296875	2	594.829172	1187.64379	-0.46601	-0.0002772	-2.193	-0.0013045	-2.659	-0.0015816	594.8280468711656	76.9	1.7487	74.529	74.033	75.781	-2.3715					90	33	4	0	0	0	0.34811	2	3980	3980;3984		75.043	20.267	1	1276600	+		28499	16420	23364	23391	31742;31743	31742					0.05747434617478575
LDTTDIKSTE	10	Unmodified	_LDTTDIKSTE_					0	0	0			REV__tr|A0A7D6VTC6|A0A7D6VTC6_9CLOTFlagellarbiosyntheticproteinFliPOS=ClostridiumintestinaleOX=36845GN=fliPPE=3SV=1	REV__tr|A0A7D6VTC6|A0A7D6VTC6_9CLOTFlagellarbiosyntheticproteinFliPOS=ClostridiumintestinaleOX=36845GN=fliPPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	561.7778930664062	2	561.779876	1121.5452	2.3552	0.0013231	-3.645	-0.0020477	-1.2898	-0.00072458	561.777958148264	135.95	1.6553	135.95	135.46	137.11	0					70	34	4	0	0	0	0.42962	1	15836	15836		64.207	0.67341	1	1077800	+		28500	31594	23365	23392	31744	31744					-0.01071213418208572
LDTTDIKSTE	10	Unmodified	_LDTTDIKSTE_					0	0	0			REV__tr|A0A7D6VTC6|A0A7D6VTC6_9CLOTFlagellarbiosyntheticproteinFliPOS=ClostridiumintestinaleOX=36845GN=fliPPE=3SV=1	REV__tr|A0A7D6VTC6|A0A7D6VTC6_9CLOTFlagellarbiosyntheticproteinFliPOS=ClostridiumintestinaleOX=36845GN=fliPPE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	561.779876	1121.5452	2.3552	0.0013231	-3.645	-0.0020477	-1.2898	-0.00072458	561.777958148264	135.95	1.6553	135.95	135.46	137.11	0	0	0	NaN	64.207	70	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1077800	+		28501	31594	23365	23392							-0.01071213418208572
LDTTLNHEF	9	Unmodified	_LDTTLNHEF_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-7|BLTP1;REV__nc|ENSG00000138688|Q2LD37-6|BLTP1	REV__nc|ENSG00000138688|Q2LD37-6|BLTP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.846435546875	2	545.264196	1088.51384	2.5007	0.0013635	-3.3557	-0.0018297	-0.85499	-0.00046619	545.7633329345391	116.17	0.73323	116.17	115.77	116.51	0					26	15	2	0	0	0	0.027462	1	13240	13240		23.042	0	1	201200	+		28502	19560;28886	23366	23393	31745	31745					-0.026877416616798655
LDTTSFHSVI	10	Unmodified	_LDTTSFHSVI_					0	0	0		ENST00000467024.5_1_20:42242523-42252704:+|nuORF;ENSG00000101052|ENST00000373030|IFT52	ENST00000467024.5_1_20:42242523-42252704:+|nuORF	ENST00000467024.5_1_20:42242523-42252704:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.3104248046875	2	560.287671	1118.56079	0.15504	8.6865E-05	2.4844	0.001392	2.6395	0.0014789	560.288565098181	71.406	0.83208	67.95	67.628	68.46	-3.4563					29	16	3	0	0	0	0.026752	1	5477	5477		35.618	0	1	101920			28503	2135	23367	23394	31746	31746					0.006251178894899567
LDTVETFGTT	10	Unmodified	_LDTVETFGTT_					0	0	0		ENSG00000183625|ENST00000395940|CCR3;nc|ENSG00000183625|P51677-2|CCR3	ENSG00000183625|ENST00000395940|CCR3	ENSG00000183625|ENST00000395940|CCR3	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.7816162109375	2	542.263862	1082.51317	1.2565	0.00068134	-1.2935	-0.00070141	-0.036994	-2.0061E-05	542.263127033882	150.03	0.85043	150.03	149.44	150.29	0					24	16	2	0	0	0	0.026871	1	17560	17560		10.265	0	1	28717			28504	8089	23368	23395	31747	31747					-0.02478581101377131
LDTWDQVF	8	Unmodified	_LDTWDQVF_					0	0	0		nc|ENSG00000148180|P06396|GSN;ENST00000373806.1_2_9:124089055-124094878:+|nuORF;ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;ENST00000373807.5_1_9:124074589-124093809:+|nuORF;CON__Q3SX14;nc|ENSG00000135407|O75366-2|AVIL;ENST00000549851.5_1_12:58191667-58209405:-|nuORF;ENSG00000135407|ENST00000549994|AVIL	nc|ENSG00000148180|P06396|GSN	nc|ENSG00000148180|P06396|GSN	MULTI-MSMS	OvCa99_classI_Rep5	1	512.2446899414062	2	512.242732	1022.47091	1.9362	0.0009918	0.077924	3.9916E-05	2.0141	0.0010317	512.2426592468727	136.43	0.7126	136.43	136.21	136.92	0					28	14	3	0	0	0	0.60331	1	15906	15906		63.306	5.495	1	224440		+	28505	15081	23369	23396	31748	31748					-0.03942511719083086
LDTWGVWPRP	10	Unmodified	_LDTWGVWPRP_					0	0	0		ENSG00000176978|ENST00000371579|DPP7;ENST00000483783.1_1_9:140005102-140007040:-|nuORF	ENSG00000176978|ENST00000371579|DPP7	ENSG00000176978|ENST00000371579|DPP7	MULTI-MSMS	OvCa99_classI_Rep5	1	613.8235473632812	2	613.819473	1225.62439	1.9793	0.001215	2.969	0.0018224	4.9483	0.0030374	613.8211310976798	83.462	8.351	83.462	82.264	90.615	0					423	201	4	0	0	0	0.63752	1	9004	9004		32.812	1.2826	1	13312000			28506	7646	23370	23397	31749	31749					0.0206052311723397
LDVAQTGGH	9	Unmodified	_LDVAQTGGH_					0	0	0		nc|ENSG00000109756|Q9Y4G8|RAPGEF2;ENSG00000109756|ENST00000691494|RAPGEF2	nc|ENSG00000109756|Q9Y4G8|RAPGEF2	nc|ENSG00000109756|Q9Y4G8|RAPGEF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	449.7585144042969	2	449.224874	896.435195	0.48967	0.00021997	-3.719	-0.0016707	-3.2293	-0.0014507	449.22303277919735	44.985	0.79044	44.985	44.75	45.54	0					27	17	3	0	0	0	0.027453	1	3155	3155		30.318	7.2752	1	252770			28507	2731	23371	23398	31750	31750					-0.017165491760806617
LDVDQLTQN	9	Unmodified	_LDVDQLTQN_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4|ABCA13	REV__nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MSMS	OvCa99_classI_Rep5	1	523.2655029296875	2	523.261653	1044.50875	0.85017	0.00044486	4.2495	0.0022236	5.0997	0.0026685	523.2636863145636	143.86	1.0388	143.86	143.37	144.4	0					43	20	3	0	0	0	0.29519	1	16816	16816		63.534	10.597	1	121710	+		28508	22143	23372	23399	31751	31751					-0.011720455242766548
LDVFDRPSI	9	Unmodified	_LDVFDRPSI_					0	0	0			REV__ENSG00000172345|ENST00000302824|STARD5	REV__ENSG00000172345|ENST00000302824|STARD5	MULTI-SECPEP	OvCa9_classI_Rep3	3	531.3034057617188	2	531.284931	1060.55531	1.5112	0.00080287	1.2926	0.00068675	2.8038	0.0014896	531.2848813287063	122.03	0.41865	121	120.85	121.27	-1.0286					14	7	3	0	0	0	0.027426	1	9377	9377		44.117	0	1	10229	+		28509	21690	23373	23400	31752	31752					0.027454390976799914
LDVFLRRHLPP	11	Unmodified	_LDVFLRRHLPP_					0	0	0		nc|nan|Q8IXR9-2|C12orf56;ENSG00000185306|ENST00000543942|C12orf56	nc|nan|Q8IXR9-2|C12orf56	nc|nan|Q8IXR9-2|C12orf56	MULTI-SECPEP	OvCa99_classI_Rep5	1	454.605712890625	3	454.93834	1361.79319	0.029751	1.3535E-05	2.5242	0.0011484	2.554	0.0011619	454.9394429113061	22.878	0.24483	22.878	22.746	22.991	0					8	5	2	0	0	0	0.026497	1	267	267		9.6461	0	1	31487			28510	8246	23374	23401	31753	31753					0.12676424750748083
LDVKHKVYLQK	11	Unmodified	_LDVKHKVYLQK_					0	0	0			REV__DOCK3|p.K1465Pfs*18|1|0.29|ENSG00000088538|chr3:51356230-51356231|-/TCCCCTCACCTTTCACACACAGCTTCCTTGGGGACCA|frameshift_variant	REV__DOCK3|p.K1465Pfs*18|1|0.29|ENSG00000088538|chr3:51356230-51356231|-/TCCCCTCACCTTTCACACACAGCTTCCTTGGGGACCA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	457.6085510253906	3	457.61	1369.80817	-3.7462	-0.0017143	-0.70205	-0.00032127	-4.4483	-0.0020356	457.60971240856696	157.06	2.9403	156.83	155.39	158.33	-0.22696					220	89	3	0	0	0	0.72516	1	15958	15958		13.508	0.55046	1	46638	+		28511	16329	23375	23402	31754	31754					0.13805871828071759
LDVKPVFKP	9	Unmodified	_LDVKPVFKP_					0	0	0			REV__nc|ENSG00000263528|Q14164-2|IKBKE	REV__nc|ENSG00000263528|Q14164-2|IKBKE	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.8148193359375	2	521.81841	1041.62227	-0.050482	-2.6343E-05	-3.9247	-0.002048	-3.9752	-0.0020743	521.8161194968234	111.82	1.7882	110.31	110	111.79	-1.5111					76	34	4	0	0	0	0.38969	1	10305	10305		52.937	5.2794	1	478680	+		28512	23579	23376	23403	31755	31755					0.10312094379423797
LDVKPVFKP	9	Unmodified	_LDVKPVFKP_					0	0	0			REV__nc|ENSG00000263528|Q14164-2|IKBKE	REV__nc|ENSG00000263528|Q14164-2|IKBKE	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.2730712890625	2	521.81841	1041.62227	-0.83354	-0.00043496	-3.4074	-0.001778	-4.2409	-0.002213	521.8159255438204	96.11	0.30243	93.684	93.457	93.76	-2.4256					9	5	2	0	0	0	0.027462	1	8452	8452		12.812	0	1	18739	+		28513	23579	23376	23403	31756	31756					0.10312094379423797
LDVLIRAPV	9	Unmodified	_LDVLIRAPV_					0	0	0			REV__ENST00000480182.1_1_2:130940128-130948196:+|nuORF	REV__ENST00000480182.1_1_2:130940128-130948196:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3155517578125	2	498.316035	994.617516	0.7807	0.00038904	-1.1222	-0.00055921	-0.3415	-0.00017018	498.31525557924255	111.08	1.6999	109.97	109.44	111.14	-1.1038					98	33	7	0	0	0	0.29717	1	8062	8062		63.306	6.5852	1	1109600	+		28514	26454	23377	23404	31757	31757					0.11999210236660929
LDVLQGRVAEL	11	Unmodified	_LDVLQGRVAEL_					0	0	0		ENSG00000221890|ENST00000333039|NPTXR	ENSG00000221890|ENST00000333039|NPTXR	ENSG00000221890|ENST00000333039|NPTXR	MULTI-SECPEP	OvCa9_classI_Rep3	3	606.8333740234375	2	606.85097	1211.68739	1.2077	0.00073292	-1.215	-0.00073733	-0.0072564	-4.4036E-06	606.8510057769377	88.263	0.35773	86.133	85.957	86.315	-2.1309					8	6	2	0	0	0	0.018913	1	5340	5340		88.177	2.3151	1	14355			28515	9232	23378	23405	31758	31758					0.09001044114620527
LDVPRFGN	8	Unmodified	_LDVPRFGN_					0	0	0			REV__ENSG00000132681|ENST00000368081|ATP1A4	REV__ENSG00000132681|ENST00000368081|ATP1A4	MULTI-MSMS	OvCa9_classI_Rep4_	4	459.2463684082031	2	459.245609	916.476666	-0.18391	-8.4462E-05	-0.74235	-0.00034092	-0.92627	-0.00042538	459.2451303587808	61.862	1.7275	58.405	57.963	59.691	-3.4577					84	35	3	0	0	0	0.61436	1	4301	4301		60.972	3.1607	1	1057900	+		28516	19095	23379	23406	31759	31759					0.015086315832377295
LDVRRYYLLY	10	Unmodified	_LDVRRYYLLY_					0	0	0			REV__ENSG00000103194|ENST00000219473|USP10	REV__ENSG00000103194|ENST00000219473|USP10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	459.2701416015625	3	458.590717	1372.75032	-0.41476	-0.0001902	4.3351	0.001988	3.9204	0.0017978	458.59263014651424	46.805	0.82136	43.733	43.501	44.322	-3.0724					24	15	2	0	0	0	0.027268	1	2453	2453		17.468	0	1	58641	+		28517	17601	23380	23407	31760	31760					0.0788560990267797
LDVSVVYREDP	11	Unmodified	_LDVSVVYREDP_					0	0	0			REV__tr|A0A553SG63|A0A553SG63_NIACILactonasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10260PE=3SV=1	REV__tr|A0A553SG63|A0A553SG63_NIACILactonasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10260PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	645.8696899414062	2	646.330067	1290.64558	0.62882	0.00040642	2.0345	0.001315	2.6633	0.0017214	646.3314500225093	114.25	0.54554	114.25	114.01	114.56	0					20	11	2	0	0	0	0.025594	1	13055	13055		49.536	14.384	1	153510	+		28518	29665	23381	23408	31761	31761					0.011884436354421268
LDVVAGEAAGL	11	Unmodified	_LDVVAGEAAGL_					0	0	0		ENSG00000158473|ENST00000674085|CD1D	ENSG00000158473|ENST00000674085|CD1D	ENSG00000158473|ENST00000674085|CD1D	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.7955322265625	2	507.776939	1013.53933	0.78134	0.00039675	0.8275	0.00042019	1.6088	0.00081694	507.77645563676583	127.77	0.54185	127.54	127.29	127.83	-0.22697					20	10	3	0	0	0	0.025377	1	12493	12493		56.721	29.925	1	28906			28519	5954	23382	23409	31762	31762					0.033097328607595955
LDVVQRPLL	9	Unmodified	_LDVVQRPLL_					0	0	0		ENSG00000198753|ENST00000361971|PLXNB3;nc|ENSG00000198753|Q9ULL4-2|PLXNB3	ENSG00000198753|ENST00000361971|PLXNB3	ENSG00000198753|ENST00000361971|PLXNB3	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.3238525390625	2	526.826766	1051.63898	1.9245	0.0010139	3.7627	0.0019823	5.6873	0.0029962	526.8285429057694	137.03	1.0943	137.03	136.73	137.82	0					55	22	4	0	0	0	0.027447	1	15957	15957		47.657	3.5405	1	490570			28520	8866	23383	23410	31763	31763					0.11522595265387281
LDVYFGDV	8	Unmodified	_LDVYFGDV_					0	0	0			REV__tr|A0A7D6VX91|A0A7D6VX91_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07570PE=4SV=1	REV__tr|A0A7D6VX91|A0A7D6VX91_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07570PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	464.2856750488281	2	464.226551	926.438549	-0.72349	-0.00033586	2.4639	0.0011438	1.7404	0.00080796	464.2276006376004	95.356	0.2029	93.461	93.362	93.565	-1.8956					5	3	2	0	0	0	0.028476	1	6220	6220		40.573	7.057	1	7564.2	+		28521	31770	23384	23411	31764	31764					-0.027612991220848926
LDVYFGDV	8	Unmodified	_LDVYFGDV_					0	0	0			REV__tr|A0A7D6VX91|A0A7D6VX91_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07570PE=4SV=1	REV__tr|A0A7D6VX91|A0A7D6VX91_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07570PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	464.2856750488281	2	464.226551	926.438549	-0.77684	-0.00036063	-2.3881	-0.0011086	-3.1649	-0.0014692	464.224513536079	95.57	0.24797	93.724	93.564	93.812	-1.8468					6	4	2	0	0	0	0.028476	1	6220	6220		40.573	0	1	6860.6	+		28522	31770	23384	23411	31765	31765					-0.027612991220848926
LDVYKKPS	8	Unmodified	_LDVYKKPS_					0	0	0		ENSG00000136960|ENST00000075322|ENPP2;nc|ENSG00000136960|Q13822-3|ENPP2;nc|ENSG00000136960|Q13822-2|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	MULTI-SECPEP	OvCa9_classI_Rep3	3	475.3133544921875	2	475.271293	948.528032	1.2214	0.0005805	-2.0304	-0.00096497	-0.80895	-0.00038447	475.2701345531249	104.27	0.72616	102.84	102.6	103.33	-1.4347					21	13	2	0	0	0	0.028476	1	7247	7247		34.173	0	1	33968			28523	4544	23385	23412	31766	31766					0.05170955557287016
LDWLKIHLV	9	Unmodified	_LDWLKIHLV_					0	0	0		ENST00000578759.1_1_17:60214444-60217453:-|nuORF;ENSG00000099821|ENST00000588649|POLRMT	ENST00000578759.1_1_17:60214444-60217453:-|nuORF	ENST00000578759.1_1_17:60214444-60217453:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	568.8455200195312	2	568.844959	1135.67537	1.1361	0.00064626	1.8132	0.0010315	2.9493	0.0016777	568.845786397459	122.98	2.0826	121.95	121	123.08	-1.034					125	39	4	0	0	0	0.35444	1	9443	9443		56.721	12.604	1	474050			28524	13973	23386	23413	31767	31767					0.11295472162055376
LDWQRAVN	8	Unmodified	_LDWQRAVN_					0	0	0			REV__nc|ENSG00000137821|Q8IUZ0-3|LRRC49	REV__nc|ENSG00000137821|Q8IUZ0-3|LRRC49	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.3047180175781	2	501.261791	1000.50903	-1.1645	-0.0005837	0.46832	0.00023475	-0.69615	-0.00034895	501.2619827279932	96.319	1.3765	94.491	94.123	95.5	-1.8286					33	26	2	0	0	0	0.028476	1	6319	6319		42.396	3.59	1	24173	+		28525	19483	23387	23414	31768	31768					0.008794189862328494
LDWRPLEPD	9	Unmodified	_LDWRPLEPD_					0	0	0		ENST00000564440.5_1_15:72491534-72491750:-|nuORF	ENST00000564440.5_1_15:72491534-72491750:-|nuORF	ENST00000564440.5_1_15:72491534-72491750:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.7647094726562	2	570.787838	1139.56112	-0.50029	-0.00028556	-2.9328	-0.001674	-3.4331	-0.0019596	570.7856122150869	41.397	0.17747	41.397	41.285	41.462	0					5	3	2	0	0	0	0.027462	1	2576	2576		27.882	0	1	28681			28526	13807	23388	23415	31769	31769					-0.003074623906513807
LDYFLLKFIL	10	Unmodified	_LDYFLLKFIL_					0	0	0			REV__ENST00000419819.2_3_7:80275924-80276026:+|nuORF	REV__ENST00000419819.2_3_7:80275924-80276026:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	429.2510681152344	3	428.924925	1283.75295	-0.29197	-0.00012523	-3.7136	-0.0015929	-4.0056	-0.0017181	428.9226169528698	91.156	0.95893	89.131	88.829	89.788	-2.0241					38	18	3	0	0	0	0.026867	1	5776	5776		11.097	0	1	118330	+		28527	25588	23389	23416	31770	31770					0.12242065307623307
LDYIRLLK	8	Unmodified	_LDYIRLLK_					0	0	0			REV__ENSG00000023734|ENST00000419869|STRAP	REV__ENSG00000023734|ENST00000419869|STRAP	MULTI-MSMS	OvCa9_classI_Rep3	3	517.3242797851562	2	517.32386	1032.63317	0.92092	0.00047641	-1.7104	-0.00088481	-0.78945	-0.0004084	517.3229495347538	104.69	2.5463	103.25	102.81	105.36	-1.4347					145	48	4	0	0	0	0.71267	1	7375	7375		40.778	1.5253	1	4143600	+		28528	16560	23390	23417	31771	31771					0.11815496753706611
LDYIRQVLE	9	Unmodified	_LDYIRQVLE_					0	0	0			REV__ENSG00000147174|ENST00000373696|GCNA	REV__ENSG00000147174|ENST00000373696|GCNA	MULTI-SECPEP	OvCa9_classI_Rep2	2	575.8177490234375	2	574.819138	1147.62372	0.10969	6.3054E-05	0.3636	0.000209	0.47329	0.00027206	574.8190888993122	91.676	0.84201	90.44	90.167	91.009	-1.2355					23	15	2	0	0	0	0.027433	1	8183	8183		60.972	0	1	41037	+		28529	20049	23391	23418	31772	31772					0.0558168367754206
LDYIRQVLE	9	Unmodified	_LDYIRQVLE_					0	0	0			REV__ENSG00000147174|ENST00000373696|GCNA	REV__ENSG00000147174|ENST00000373696|GCNA	MULTI-MATCH	OvCa9_classI_Rep3	3		2	574.819138	1147.62372	-1.9206	-0.001104	1.3652	0.00078474	-0.55541	-0.00031926	574.8196093346801	92.471	0.5546	90.447	90.315	90.87	-2.0241	0.003275	0.0006926	NaN	60.972	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49516	+		28530	20049	23391	23418							0.0558168367754206
LDYLKDFF	8	Unmodified	_LDYLKDFF_					0	0	0		nc|ENSG00000107201|O95786-2|RIGI;ENSG00000107201|ENST00000379883|RIGI	nc|ENSG00000107201|O95786-2|RIGI	nc|ENSG00000107201|O95786-2|RIGI	MULTI-MSMS	OvCa99_classI_Rep5	1	530.7722778320312	2	530.771126	1059.5277	1.5762	0.00083659	0.25395	0.00013479	1.8301	0.00097138	530.7711398999143	148.39	0.9857	148.39	147.98	148.97	0					48	19	4	0	0	0	0.62474	1	17378	17378		58.782	0	1	279470			28531	2596	23392	23419	31773	31773					0.00031535837410956447
LDYLKNQPA	9	Unmodified	_LDYLKNQPA_					0	0	0		nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6;ENST00000451107.3_1_12:95475298-95611245:-|nuORF	nc|ENSG00000180263|Q6ZV73-2|FGD6	nc|ENSG00000180263|Q6ZV73-2|FGD6	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.8098754882812	2	531.284931	1060.55531	0.91356	0.00048536	-1.6941	-0.00090006	-0.78056	-0.0004147	531.7845812544149	74.553	0.47816	74.553	74.324	74.802	0					20	11	4	0	0	0	0.027461	1	7414	7414		49.442	3.4896	1	632720			28532	7866	23393	23420	31774	31774					0.027454390976799914
LDYNKINMN	9	Unmodified	_LDYNKINMN_					0	0	0		tr|A0A7D6VZ76|A0A7D6VZ76_9CLOTExonucleasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18555PE=4SV=1	tr|A0A7D6VZ76|A0A7D6VZ76_9CLOTExonucleasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18555PE=4SV=1	tr|A0A7D6VZ76|A0A7D6VZ76_9CLOTExonucleasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18555PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.783935546875	2	562.773874	1123.53319	2.8974	0.0016306	0.054533	3.069E-05	2.952	0.0016613	562.7736578525569	96.589	0.33232	96.589	96.378	96.71	0					12	7	2	0	0	0	0.027462	1	10573	10573		19.997	0	1	518590			28533	35352	23394	23421	31775	31775					-0.02363108642384759
LDYQNQVALI	10	Unmodified	_LDYQNQVALI_					0	0	0			REV__nc|ENSG00000166960|Q5BJE1-4|CCDC178	REV__nc|ENSG00000166960|Q5BJE1-4|CCDC178	MULTI-MSMS	OvCa9_classI_Rep3	3	588.8173217773438	2	588.816596	1175.61864	-0.63539	-0.00037413	0.48748	0.00028704	-0.1479	-8.7089E-05	588.8167831837943	129.05	0.98856	127.95	127.56	128.55	-1.1011					50	19	4	0	0	0	0.66721	1	10195	10195		34.173	1.3601	1	135200	+		28534	28982	23395	23422	31776	31776					0.037853798148944406
LDYTLSTF	8	Unmodified	_LDYTLSTF_					0	0	0			REV__nc|ENSG00000187908|Q9UGM3-3|DMBT1	REV__nc|ENSG00000187908|Q9UGM3-3|DMBT1	MULTI-MSMS	OvCa99_classI_Rep5	1	480.2314453125	2	480.239658	958.464763	-0.41202	-0.00019787	-3.864	-0.0018557	-4.276	-0.0020535	480.237753486205	51.729	1.2799	51.729	51.461	52.741	0					60	29	4	0	0	0	0.44269	1	4000	4000		83.287	0.98216	1	9541700	+		28535	29062	23396	23423	31777	31777					-0.016130299506244228
LDYWEQWVT	9	Unmodified	_LDYWEQWVT_					0	0	0			REV__ENSG00000197653|ENST00000673944|DNAH10	REV__ENSG00000197653|ENST00000673944|DNAH10	MULTI-SECPEP	OvCa99_classI_Rep5	1	413.7149658203125	3	413.860873	1238.56079	-0.047678	-1.9732E-05	-2.8028	-0.00116	-2.8505	-0.0011797	413.8599446378717	65.599	0.28017	65.599	65.426	65.707	0					11	6	2	0	0	0	0.027462	1	6007	6007		32.751	8.2313	1	194550	+		28536	22941	23397	23424	31778	31778					-0.04894882110534127
LEAAAQAARDV	11	Unmodified	_LEAAAQAARDV_					0	0	0		ENSG00000178896|ENST00000316052|EXOSC4	ENSG00000178896|ENST00000316052|EXOSC4	ENSG00000178896|ENST00000316052|EXOSC4	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.7967529296875	2	557.796195	1113.57784	0.49114	0.00027396	-1.3644	-0.00076105	-0.87324	-0.00048709	557.7953291619052	63.705	1.5015	60.23	59.916	61.417	-3.475					51	30	2	0	0	0	0.63561	1	4511	4511		41.427	2.1738	1	994850			28537	7783	23398	23425	31779	31779					0.025590384952693057
LEAAEAPGPQP	11	Unmodified	_LEAAEAPGPQP_					0	0	0		ENSG00000165238|ENST00000427277|WNK2;nc|ENSG00000165238|Q9Y3S1-2|WNK2;nc|ENSG00000165238|Q9Y3S1-4|WNK2;nc|ENSG00000165238|Q9Y3S1|WNK2;nc|ENSG00000165238|Q9Y3S1-3|WNK2	ENSG00000165238|ENST00000427277|WNK2	ENSG00000165238|ENST00000427277|WNK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.3696899414062	2	540.272021	1078.52949	2.1815	0.0011786	0.048009	2.5938E-05	2.2296	0.0012046	540.2720672771094	77.094	0.37056	77.094	76.922	77.293	0					13	8	2	0	0	0	0.025257	1	7766	7766		44.377	0	1	142860			28538	6538	23399	23426	31780	31780					-0.0066345514460408594
LEAAKALVL	9	Unmodified	_LEAAKALVL_					0	0	0		ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF	ENSG00000166888|ENST00000300134|STAT6	ENSG00000166888|ENST00000300134|STAT6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.2841796875	2	464.29731	926.580068	-1.1552	-0.00053635	-0.60446	-0.00028065	-1.7597	-0.000817	464.29699197794804	95.857	0.55555	93.432	93.204	93.76	-2.4256					24	10	3	0	0	0	0.027447	1	8450	8450		56.721	19.562	1	228180			28539	6730	23400	23427	31781	31781					0.1138411897103424
LEAAKGFNPH	10	Unmodified	_LEAAKGFNPH_					0	0	0		nc|ENSG00000166348|Q70EL1-7|USP54;ENSG00000166348|ENST00000687698|USP54;nc|ENSG00000166348|Q70EL1-6|USP54;ENST00000498143.5_1_10:75279553-75335416:-|nuORF	nc|ENSG00000166348|Q70EL1-7|USP54	nc|ENSG00000166348|Q70EL1-7|USP54	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.818603515625	2	542.282723	1082.55089	-0.46826	-0.00025393	0.10792	5.8522E-05	-0.36034	-0.00019541	542.2826257092747	72.678	0.78092	70.278	69.959	70.74	-2.3999					20	14	2	0	0	0	0.026734	1	5855	5855		47.657	12.039	1	22947			28540	6668	23401	23428	31782	31782					0.012919746747684258
LEAANLFQLD	10	Unmodified	_LEAANLFQLD_					0	0	0		ENST00000487643.1_1_3:183240843-183262455:-|nuORF	ENST00000487643.1_1_3:183240843-183262455:-|nuORF	ENST00000487643.1_1_3:183240843-183262455:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	566.3132934570312	2	567.295496	1132.57644	0.91828	0.00052093	1.5647	0.00088766	2.483	0.0014086	567.7977466312836	60.405	0.4437	56.975	56.7	57.144	-3.43					24	8	4	0	0	0	0.026553	1	4088	4088		39.253	5.0803	1	35814			28541	12652	23402	23429	31783	31783					0.015454044065108974
LEADFNNLN	9	Unmodified	_LEADFNNLN_					0	0	0		tr|A0A553SIN5|A0A553SIN5_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_15210PE=3SV=1	tr|A0A553SIN5|A0A553SIN5_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_15210PE=3SV=1	tr|A0A553SIN5|A0A553SIN5_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_15210PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.776611328125	2	525.248546	1048.48254	0.87988	0.00046216	-1.8032	-0.00094714	-0.92335	-0.00048499	525.2473012647835	74.453	0.83795	74.453	74.249	75.087	0					33	20	2	0	0	0	0.027462	1	7412	7412		37.812	11.119	1	153950			28542	33402	23403	23430	31784	31784					-0.03976314695751171
LEADRSSY	8	Unmodified	_LEADRSSY_					0	0	0			REV__nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1	REV__nc|ENSG00000149115|Q9C0C2-2|TNKS1BP1	MULTI-MSMS	OvCa99_classI_Rep5	1	470.7247314453125	2	470.722164	939.429775	1.6004	0.00075336	4.4494	0.0020944	6.0499	0.0028478	470.72413445495187	112.05	0.82472	112.05	111.74	112.57	0					35	17	3	0	0	0	0.39692	1	12738	12738		88.643	6.3378	1	786710	+		28543	20144	23404	23431	31785	31785					-0.042362727585668836
LEADVNIKL	9	Unmodified	_LEADVNIKL_					0	0	0		ENSG00000100883|ENST00000216774|SRP54;ENST00000555317.5_1_14:35465915-35468856:+|nuORF;ENST00000555535.1_1_14:35465915-35473764:+|nuORF	ENSG00000100883|ENST00000216774|SRP54	ENSG00000100883|ENST00000216774|SRP54	MSMS	OvCa99_classI_Rep5	1	507.7959289550781	2	507.795132	1013.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.278	1	99.278	98.778	99.778	0								0	0	0	0.027296	1	10968	10968		117.81	21.996	1				28544	2114	23405	23432	31786	31786					0.06946609757460465
LEADVNIKL	9	Unmodified	_LEADVNIKL_					0	0	0		ENSG00000100883|ENST00000216774|SRP54;ENST00000555317.5_1_14:35465915-35468856:+|nuORF;ENST00000555535.1_1_14:35465915-35473764:+|nuORF	ENSG00000100883|ENST00000216774|SRP54	ENSG00000100883|ENST00000216774|SRP54	MSMS	OvCa99_classI_Rep5	1	507.7957763671875	2	507.795132	1013.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.477	1	99.477	98.977	99.977	0								0	0	0	0.023636	1	10996	10996		98.582	2.5484	1				28545	2114	23405	23432	31787	31787					0.06946609757460465
LEAELIRDV	9	Unmodified	_LEAELIRDV_					0	0	0			REV__ENST00000481441.1_1_6:33164057-33166316:-|nuORF	REV__ENST00000481441.1_1_6:33164057-33166316:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.8154907226562	2	529.298039	1056.58152	0.35854	0.00018977	-2.6578	-0.0014068	-2.2992	-0.001217	529.2986505732781	68.107	0.58389	64.617	64.087	64.671	-3.4902					19	11	2	0	0	0	0.027462	1	5015	5015		32.812	3.6629	1	62741	+		28546	23135	23406	23433	31788	31788					0.055497082691545074
LEAENFALP	9	Unmodified	_LEAENFALP_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.8008117675781	2	502.258382	1002.50221	-0.18532	-9.3078E-05	-2.5237	-0.0012676	-2.7091	-0.0013606	502.2571082897451	73.471	0.36034	73.471	73.317	73.678	0					12	8	2	0	0	0	0.027418	1	7232	7232		68.787	2.3575	1	234600			28547	8857	23407	23434	31789	31789					0.0010606131498889226
LEAEPKMLL	9	Unmodified	_LEAEPKMLL_					0	0	0			REV__nc|ENSG00000126838|P20742-2|PZP	REV__nc|ENSG00000126838|P20742-2|PZP	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.3092041015625	2	522.293911	1042.57327	-1.0687	-0.00055816	-2.5111	-0.0013115	-3.5797	-0.0018697	522.2919083520426	103.57	0.58801	103.57	103.26	103.85	0					25	13	4	0	0	0	0.027411	1	11538	11538		74.255	8.4519	1	240390	+		28548	28835	23408	23435	31790	31790					0.0536843802817657
LEAGGQSEAP	10	Unmodified	_LEAGGQSEAP_					0	0	0			REV__PCED1A|p.D40Gfs*35|1|0.07|ENSG00000132635|chr20:2839796-2839797|-/G|frameshift_variant	REV__PCED1A|p.D40Gfs*35|1|0.07|ENSG00000132635|chr20:2839796-2839797|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.783447265625	2	479.727446	957.44034	-0.27474	-0.0001318	-2.2014	-0.0010561	-2.4761	-0.0011879	479.7250602687821	48.353	0.30975	45.245	45.09	45.399	-3.1077					9	5	2	0	0	0	0.027632	1	2663	2663		58.23	29.08	1	10134	+		28549	29283	23409	23436	31791	31791					-0.04008290104138723
LEAGLPLV	8	Unmodified	_LEAGLPLV_					0	0	0			REV__ENST00000485984.1_1_1:3389348-3394597:+|nuORF	REV__ENST00000485984.1_1_1:3389348-3394597:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	406.2483825683594	2	406.249829	810.485105	0.12737	5.1745E-05	-3.126	-0.00127	-2.9987	-0.0012182	406.2484453732125	140.19	2.0181	139.96	139.4	141.42	-0.22697					109	40	4	0	0	0	0.75991	1	14025	14025		21.702	0	1	304300	+		28550	26575	23410	23437	31792	31792					0.07228185499843676
LEAGNTAIVNK	11	Unmodified	_LEAGNTAIVNK_					0	0	0			REV__tr|A0A553SNU4|A0A553SNU4_NIACIGlycosidehydrolasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_25045PE=3SV=1	REV__tr|A0A553SNU4|A0A553SNU4_NIACIGlycosidehydrolasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_25045PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	565.3133544921875	2	565.31422	1128.61389	-0.33863	-0.00019143	-0.4419	-0.00024981	-0.78053	-0.00044124	565.3146090333048	59.402	2.1276	56.622	55.838	57.966	-2.7801					203	40	7	0	0	0	0.14417	1	4307	4307		87.696	5.4559	1	1937000	+		28551	30455	23411	23438	31793	31793					0.054724956721202034
LEAGVSMLPTF	11	Unmodified	_LEAGVSMLPTF_					0	0	0		ENST00000441052.1_1_7:44079131-44079272:+|nuORF	ENST00000441052.1_1_7:44079131-44079272:+|nuORF	ENST00000441052.1_1_7:44079131-44079272:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	582.8015747070312	2	582.8021	1163.58965	1.1315	0.00065944	-2.4573	-0.0014321	-1.3258	-0.00077268	582.8006818033648	147.53	6.6763	147.53	147.01	153.69	0					349	139	4	0	0	0	0.3578	1	17352	17352		64.207	9.431	1	20317000			28552	11926	23412	23439	31794	31794					0.014395191942412566
LEAHCGAALL	10	Unmodified	_LEAHCGAALL_					0	0	0			REV__nc|ENSG00000132185|Q7L513-4|FCRLA	REV__nc|ENSG00000132185|Q7L513-4|FCRLA	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.9446105957031	2	499.260402	996.506251	-0.75523	-0.00037706	-1.5408	-0.00076927	-2.296	-0.0011463	499.25999341867043	81.453	1.1137	79.13	78.645	79.759	-2.3226					40	21	3	0	0	0	0.02649	1	4581	4581		60.972	16.441	1	139230	+		28553	28851	23413	23440	31795	31795					0.00785827537060868
LEAHTIATL	9	Unmodified	_LEAHTIATL_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;ZNFX1|p.V1053Afs*12|1|0.06|ENSG00000124201|chr20:49252778-49252779|-/TCTCGGCTCACTGCAACCACCG|frameshift_variant	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	OvCa99_classI_Rep5	1	484.77728271484375	2	484.7742	967.533846	1.5532	0.00075297	0.5325	0.00025814	2.0857	0.0010111	484.7742652735255	79.394	0.74658	79.394	79.16	79.907	0					23	18	2	0	0	0	0.27546	1	8094	8094		65.803	0	1	787320			28554	3631	23414	23441	31796	31796					0.048780540689676855
LEAHTIATL	9	Unmodified	_LEAHTIATL_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;ZNFX1|p.V1053Afs*12|1|0.06|ENSG00000124201|chr20:49252778-49252779|-/TCTCGGCTCACTGCAACCACCG|frameshift_variant	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	484.7742	967.533846	-1.0605	-0.00051409	1.6664	0.00080784	0.60594	0.00029374	484.77482878352384	81.822	0.65364	79.508	79.317	79.971	-2.3137	0.010765	0.00060755	NaN	65.803	43	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161730			28555	3631	23414	23441							0.048780540689676855
LEAHTIATL	9	Unmodified	_LEAHTIATL_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;ZNFX1|p.V1053Afs*12|1|0.06|ENSG00000124201|chr20:49252778-49252779|-/TCTCGGCTCACTGCAACCACCG|frameshift_variant	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	484.7742	967.533846	-0.64976	-0.00031499	1.0509	0.00050944	0.40111	0.00019445	484.77447859090336	82.273	0.77884	79.59	79.346	80.124	-2.683	0.092922	1.0746E-05	NaN	65.803	38	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122710			28556	3631	23414	23441							0.048780540689676855
LEAIRTEVPD	10	Unmodified	_LEAIRTEVPD_					0	0	0		nc|ENSG00000133958|Q9P2D8-2|UNC79;nc|ENSG00000133958|Q9P2D8|UNC79;nc|ENSG00000133958|Q9P2D8-3|UNC79;ENSG00000133958|ENST00000695012|UNC79	nc|ENSG00000133958|Q9P2D8-2|UNC79	nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-MSMS	OvCa9_classI_Rep3	3	571.807373046875	2	571.806228	1141.5979	-1.0141	-0.00057984	0.69566	0.00039778	-0.3184	-0.00018206	571.8065418779107	90.155	1.8847	88.075	87.592	89.477	-2.0805					116	36	7	0	0	0	0.10472	1	5578	5578		112.41	8.3973	1	2048900			28557	4243	23415	23442	31797	31797					0.03276789435244609
LEAIRTEVPD	10	Unmodified	_LEAIRTEVPD_					0	0	0		nc|ENSG00000133958|Q9P2D8-2|UNC79;nc|ENSG00000133958|Q9P2D8|UNC79;nc|ENSG00000133958|Q9P2D8-3|UNC79;ENSG00000133958|ENST00000695012|UNC79	nc|ENSG00000133958|Q9P2D8-2|UNC79	nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-MSMS	OvCa9_classI_Rep4_	4	571.80712890625	2	571.806228	1141.5979	-0.092548	-5.292E-05	-0.21324	-0.00012193	-0.30579	-0.00017485	571.8060449907583	90.555	1.7834	87.98	87.65	89.433	-2.575					116	34	4	0	0	0	0.13777	1	7788	7788		104.06	8.0232	1	1782900			28558	4243	23415	23442	31798	31798					0.03276789435244609
LEAIVTVTE	9	Unmodified	_LEAIVTVTE_					0	0	0		nc|ENSG00000132692|Q96GW7-2|BCAN;ENSG00000132692|ENST00000329117|BCAN	nc|ENSG00000132692|Q96GW7-2|BCAN	nc|ENSG00000132692|Q96GW7-2|BCAN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.8150329589844	2	487.773865	973.533177	0.0063464	3.0956E-06	0.67909	0.00033124	0.68544	0.00033434	487.773919762442	58.188	0.95569	54.843	54.291	55.247	-3.3449					28	18	2	0	0	0	0.027462	1	3764	3764		37.159	0	1	24494			28559	4165	23416	23443	31799	31799					0.04535214629243001
LEAIWSNIFSL	11	Unmodified	_LEAIWSNIFSL_					0	0	0		ENSG00000159337|ENST00000290472|PLA2G4D;nc|ENSG00000159337|Q86XP0-2|PLA2G4D	ENSG00000159337|ENST00000290472|PLA2G4D	ENSG00000159337|ENST00000290472|PLA2G4D	MULTI-MSMS	OvCa99_classI_Rep5	1	646.8477783203125	2	646.847896	1291.68124	1.878	0.0012148	-0.30591	-0.00019788	1.5721	0.0010169	646.8486261840292	119.88	0.66956	119.88	119.65	120.32	0					35	15	3	0	0	0	0.16771	1	13758	13758		76.17	9.7404	1	1205100			28560	6004	23417	23444	31800	31800					0.047065258830798484
LEAKKCVKN	9	Unmodified	_LEAKKCVKN_					0	0	0		nc|ENSG00000228970|P0CB48|UBTFL6	nc|ENSG00000228970|P0CB48|UBTFL6	nc|ENSG00000228970|P0CB48|UBTFL6	MULTI-SECPEP	OvCa9_classI_Rep3	3	516.8265380859375	2	516.797152	1031.57975	-0.15301	-7.9074E-05	1.3492	0.00069724	1.1961	0.00061816	517.3000043488099	94.192	1.4127	92.297	92.001	93.414	-1.8956					36	27	2	0	0	0	0.027343	1	6095	6095		32.812	0	1	89881			28561	15326	23418	23445	31801	31801					0.06522375979557182
LEAKKVFPK	9	Unmodified	_LEAKKVFPK_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.8172607421875	2	530.331685	1058.64882	-1.8497	-0.00098096	0.78765	0.00041772	-1.0621	-0.00056325	530.3330157820038	73.447	0.14557	70.051	69.93	70.076	-3.3961					4	2	2	0	0	0	0.027426	1	5680	5680		44.117	0	1	12462			28562	6864	23419	23446	31802	31802					0.12183783270756976
LEAKLDKPDV	10	Unmodified	_LEAKLDKPDV_					0	0	0		ENSG00000213398|ENST00000264005|LCAT	ENSG00000213398|ENST00000264005|LCAT	ENSG00000213398|ENST00000264005|LCAT	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.811767578125	2	564.318971	1126.62339	2.1212	0.001197	3.3886	0.0019122	5.5098	0.0031093	564.3207965819222	108.86	0.95445	108.86	108.24	109.19	0					18	13	2	0	0	0	0.026493	1	12323	12323		80.455	20.336	1	1492800			28563	9127	23420	23447	31803	31803					0.0651426395766066
LEALCSLIL	9	Unmodified	_LEALCSLIL_					0	0	0			REV__ENSG00000138161|ENST00000392790|CUZD1	REV__ENSG00000138161|ENST00000392790|CUZD1	MULTI-MSMS	OvCa99_classI_Rep5	1	487.7843017578125	2	487.783179	973.551804	0.93563	0.00045638	1.1679	0.00056967	2.1035	0.0010261	487.7835429881119	156.22	1.465	156.22	155.68	157.15	0					56	28	3	0	0	0	0.55588	1	18328	18328		37.159	0	1	192870	+		28564	19517	23421	23448	31804	31804					0.06397052999466268
LEALLEGCPNL	11	Unmodified	_LEALLEGCPNL_					0	0	0			REV__ENSG00000196620|ENST00000338206|UGT2B15	REV__ENSG00000196620|ENST00000338206|UGT2B15	MULTI-MSMS	OvCa99_classI_Rep5	1	586.3067016601562	2	586.305007	1170.59546	2.032	0.0011914	0.97689	0.00057275	3.0089	0.0017641	586.3054552516699	116.39	0.8577	116.39	116.09	116.95	0					60	18	5	0	0	0	0.50928	1	13329	13329		52.937	1.6012	1	3529500	+		28565	22850	23422	23449	31805	31805					0.01698617705937977
LEALLNKTM	9	Unmodified	_LEALLNKTM_					0	0	0		ENSG00000183011|ENST00000575771|NAA38;nc|ENSG00000183011|Q9BRA0-2|NAA38	ENSG00000183011|ENST00000575771|NAA38	ENSG00000183011|ENST00000575771|NAA38	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.27197265625	2	516.791535	1031.56852	-0.81016	-0.00041869	-3.8567	-0.0019931	-4.6669	-0.0024118	516.7898479951511	82.586	0.441	79.904	79.587	80.028	-2.6829					14	8	2	0	0	0	0.027433	1	6808	6808		51.335	8.9393	1	12527			28566	8044	23423	23450	31806	31806					0.053995538853769176
LEALSRLLV	9	Unmodified	_LEALSRLLV_					0	0	0		tr|A0A553SUR8|A0A553SUR8_NIACIDUF2264domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05885PE=4SV=1	tr|A0A553SUR8|A0A553SUR8_NIACIDUF2264domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05885PE=4SV=1	tr|A0A553SUR8|A0A553SUR8_NIACIDUF2264domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05885PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	507.3221740722656	2	507.321317	1012.62808	1.7978	0.00091208	-2.1486	-0.00109	-0.35076	-0.00017795	507.31979097350575	102.9	0.92271	102.9	102.72	103.64	0					70	21	5	0	0	0	0.055627	1	11502	11502		115.49	3.0831	1	10607000			28567	34633	23424	23451	31807	31807					0.12227192891089089
LEALVELEAAF	11	Unmodified	_LEALVELEAAF_					0	0	0			REV__ENSG00000127586|ENST00000262315|CHTF18	REV__ENSG00000127586|ENST00000262315|CHTF18	MULTI-MSMS	OvCa9_classI_Rep2	2	602.8252563476562	2	602.826629	1203.63871	-1.3677	-0.00082446	-0.91718	-0.0005529	-2.2848	-0.0013774	602.8260393808384	68.613	1.5415	65.993	65.671	67.213	-2.6203					87	30	4	0	0	0	0.55686	1	5424	5424		24.519	0	1	469290	+		28568	18822	23425	23452	31808	31808					0.04503130754847007
LEALVMVEF	9	Unmodified	_LEALVMVEF_					0	0	0			REV__nc|ENSG00000158941|Q8N163-2|CCAR2	REV__nc|ENSG00000158941|Q8N163-2|CCAR2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.298583984375	2	525.780636	1049.54672	0.34901	0.0001835	-1.2756	-0.00067066	-0.92654	-0.00048716	526.2798145583882	97.314	0.60896	94.936	94.708	95.317	-2.3786					14	11	2	0	0	0	0.027448	1	8626	8626		53.351	3.3269	1	25073	+		28569	20589	23426	23453	31809	31809					0.023927491368112896
LEALVRRVP	9	Unmodified	_LEALVRRVP_					0	0	0			REV__tr|A0A7D6VNW9|A0A7D6VNW9_9CLOTPhospho-sugarmutaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14760PE=3SV=1	REV__tr|A0A7D6VNW9|A0A7D6VNW9_9CLOTPhospho-sugarmutaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14760PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	526.8348388671875	2	526.832383	1051.65021	-0.49163	-0.00025901	2.7129	0.0014293	2.2213	0.0011703	526.8320416625822	69.753	1.7679	67.183	66.815	68.583	-2.5707					57	34	3	0	0	0	0.36502	1	5563	5563		55.504	4.1688	1	983010	+		28570	31210	23427	23454	31810	31810					0.12645417359499334
LEAMRSNAL	9	Unmodified	_LEAMRSNAL_					0	0	0			REV__nc|ENSG00000103549|O75150-3|RNF40	REV__nc|ENSG00000103549|O75150-3|RNF40	MULTI-MSMS	OvCa9_classI_Rep3	3	502.7627868652344	2	502.763309	1003.51206	1.2962	0.00065166	-1.3666	-0.00068706	-0.070404	-3.5396E-05	502.76247959947113	61.457	2.958	58.389	57.803	60.761	-3.0685					131	69	3	0	0	0	0.53483	2	2190	2160;2190		39.253	2.8061	1	112640	+		28571	17626	23428	23455	31811;31812	31812					0.010449260487234824
LEAMRSNAL	9	Unmodified	_LEAMRSNAL_					0	0	0			REV__nc|ENSG00000103549|O75150-3|RNF40	REV__nc|ENSG00000103549|O75150-3|RNF40	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.76416015625	2	502.763309	1003.51206	-0.43024	-0.00021631	-0.40945	-0.00020586	-0.83969	-0.00042217	502.7630183578163	61.859	1.2959	58.401	57.963	59.259	-3.4577					72	26	4	0	0	0	0.21231	1	4240	4240		74.255	8.3576	1	1046700	+		28572	17626	23428	23455	31813	31813					0.010449260487234824
LEANMQTYME	10	Unmodified	_LEANMQTYME_					0	0	0			REV__ENSG00000139433|ENST00000318348|GLTP	REV__ENSG00000139433|ENST00000318348|GLTP	MULTI-SECPEP	OvCa99_classI_Rep5	1	409.72222900390625	3	410.510746	1228.51041	0.47076	0.00019325	2.3336	0.00095797	2.8044	0.0011512	410.51165310118296	41.62	0.52058	41.62	41.42	41.94	0					24	11	3	0	0	0	0.026819	1	2634	2634		35.178	14.863	1	183340	+		28573	19610	23429	23456	31814	31814					-0.09470495822188241
LEAPALCALL	10	Unmodified	_LEAPALCALL_					0	0	0		ENST00000376572.7_1_1:11980159-11980375:-|nuORF	ENST00000376572.7_1_1:11980159-11980375:-|nuORF	ENST00000376572.7_1_1:11980159-11980375:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.765625	2	507.288628	1012.5627	-0.79903	-0.00040534	3.6325	0.0018427	2.8335	0.0014374	507.2903703887646	63.312	0.7708	59.837	59.386	60.156	-3.475					33	15	3	0	0	0	0.026639	1	4475	4475		63.306	13.865	1	59352			28574	11073	23430	23457	31815	31815					0.05692455373730354
LEAPCLLLPI	10	Unmodified	_LEAPCLLLPI_					0	0	0			REV__ENST00000539304.1_1_12:7344181-7354515:+|nuORF	REV__ENST00000539304.1_1_12:7344181-7354515:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.7843017578125	2	541.319928	1080.6253	-1.051	-0.00056895	2.9059	0.001573	1.8549	0.0010041	541.3214341105127	96.043	1.2668	93.618	93.005	94.271	-2.4256					38	24	2	0	0	0	0.026871	1	8511	8511		37.159	0	1	42232	+		28575	27335	23431	23458	31816	31816					0.08821601441923121
LEAREGHAL	9	Unmodified	_LEAREGHAL_					0	0	0			REV__nc|ENSG00000175166|Q13200-2|PSMD2	REV__nc|ENSG00000175166|Q13200-2|PSMD2	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.9446105957031	2	498.267073	994.519593	-1.0581	-0.00052723	-1.8363	-0.00091497	-2.8945	-0.0014422	498.2652083443582	82.226	0.99623	79.93	79.385	80.381	-2.2963					24	19	2	0	0	0	0.027411	1	4581	4581		54.776	3.5836	1	43774	+		28576	21875	23432	23459	31817	31817					0.022114016406590054
LEAREGHAL	9	Unmodified	_LEAREGHAL_					0	0	0			REV__nc|ENSG00000175166|Q13200-2|PSMD2	REV__nc|ENSG00000175166|Q13200-2|PSMD2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	498.267073	994.519593	-0.58781	-0.00029289	-3.0945	-0.0015419	-3.6823	-0.0018348	498.26569254915603	82.846	0.58389	80.163	79.979	80.563	-2.683	0.11641	-0.00020875	NaN	54.776	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36882	+		28577	21875	23432	23459							0.022114016406590054
LEARQTPAFS	10	Unmodified	_LEARQTPAFS_					0	0	0		ENSG00000239620|ENST00000465482|PRR20G	ENSG00000239620|ENST00000465482|PRR20G	ENSG00000239620|ENST00000465482|PRR20G	MULTI-SECPEP	OvCa9_classI_Rep4_	4	560.8013916015625	2	560.293288	1118.57202	5.0083	0.0028061	-1.6755	-0.00093878	3.3328	0.0018674	560.2930651189519	131.65	0.3508	130.15	129.87	130.22	-1.5015					10	7	2	0	0	0	0.027117	1	12649	12649		35.152	12.11	1	9981.2			28578	9329	23433	23460	31818	31818					0.017479399836020093
LEARSLVAVE	10	Unmodified	_LEARSLVAVE_					0	0	0			REV__nc|ENSG00000168016|O15050|TRANK1	REV__nc|ENSG00000168016|O15050|TRANK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.8124389648438	2	543.811313	1085.60807	-0.19446	-0.00010575	-4.2871	-0.0023314	-4.4815	-0.0024371	543.8082250452802	122.74	1.2517	121.37	120.6	121.85	-1.3666					60	24	3	0	0	0	0.50999	1	11626	11626		52.937	1.744	1	106640	+		28579	21335	23434	23461	31819	31819					0.06869397160471635
LEASCWIPL	9	Unmodified	_LEASCWIPL_					0	0	0		ENSG00000132740|ENST00000255078|IGHMBP2	ENSG00000132740|ENST00000255078|IGHMBP2	ENSG00000132740|ENST00000255078|IGHMBP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2845458984375	2	516.265153	1030.51575	-0.11656	-6.0178E-05	3.4639	0.0017883	3.3474	0.0017281	516.2668265884738	71.813	0.20628	71.813	71.629	71.835	0					7	4	2	0	0	0	0.02721	1	6944	6944		73.975	17.254	1	1779000			28580	4169	23435	23462	31820	31820					0.0017159582259864692
LEASTHLLV	9	Unmodified	_LEASTHLLV_					0	0	0		LEFTY1|p.A303Sfs*20|1|0.07|ENSG00000243709|chr1:225886921-225886922|-/T|frameshift_variant;ENSG00000243709|ENST00000272134|LEFTY1	LEFTY1|p.A303Sfs*20|1|0.07|ENSG00000243709|chr1:225886921-225886922|-/T|frameshift_variant	LEFTY1|p.A303Sfs*20|1|0.07|ENSG00000243709|chr1:225886921-225886922|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	491.78179931640625	2	491.782025	981.549496	-0.96888	-0.00047648	0.50767	0.00024966	-0.46121	-0.00022681	491.7821166855375	85.065	2.7262	83.519	82.95	85.676	-1.5462					113	53	3	0	0	0	0.098892	1	7331	7331		97.473	20.626	1	636350			28581	9381	23436	23463	31821	31821					0.057983405860113635
LEAVARTSPG	10	Unmodified	_LEAVARTSPG_					0	0	0			REV__ENST00000560913.1_1_14:23768682-23770724:-|nuORF	REV__ENST00000560913.1_1_14:23768682-23770724:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.8280944824219	2	500.774731	999.534909	-0.70783	-0.00035447	-0.29919	-0.00014982	-1.007	-0.00050429	500.77472895574726	73.708	1.938	71.308	70.22	72.158	-2.3999					68	36	2	0	0	0	0.027716	1	6047	6047		96.19	8.4361	1	114640	+		28582	25974	23437	23464	31822	31822					0.035122684378507074
LEAVKFRR	8	Unmodified	_LEAVKFRR_					0	0	0			REV__tr|A0A553SSB0|A0A553SSB0_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_02620PE=3SV=1	REV__tr|A0A553SSB0|A0A553SSB0_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_02620PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.7606201171875	2	509.811451	1017.60835	0.14082	7.1794E-05	-1.7176	-0.00087563	-1.5767	-0.00080384	509.8104708732895	57.242	0.86211	57.242	56.788	57.65	0					38	19	4	0	0	0	0.028476	1	4794	4794		34.173	0	1	928950	+		28583	30818	23438	23465	31823	31823					0.10024861670990504
LEAWNEQL	8	Unmodified	_LEAWNEQL_					0	0	0		tr|A0A553SPT5|A0A553SPT5_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_08335PE=4SV=1	tr|A0A553SPT5|A0A553SPT5_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_08335PE=4SV=1	tr|A0A553SPT5|A0A553SPT5_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_08335PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	501.7513427734375	2	501.748182	1001.48181	0.41091	0.00020617	3.8747	0.0019441	4.2856	0.0021503	501.7499781759531	161.52	0.55779	161.52	161.26	161.82	0					17	10	2	0	0	0	0.73205	1	18939	18939		35.618	0	1	51428			28584	34082	23439	23466	31824	31824					-0.018871093448183274
LECCEFPF	8	Carbamidomethyl (C)	_LEC(Carbamidomethyl (C))CEFPF_	LEC(0.5)C(0.5)EFPF		LEC(0)C(0)EFPF		0	1	0		nc|ENSG00000120693|O15198-2|SMAD9;ENSG00000170365|ENST00000302085|SMAD1;ENSG00000120693|ENST00000379826|SMAD9;SMAD9|p.K120N|1|0.04|ENSG00000120693|chr13:36879330-36879330|C/A|missense_variant	nc|ENSG00000120693|O15198-2|SMAD9	nc|ENSG00000120693|O15198-2|SMAD9	MULTI-MSMS	OvCa9_classI_Rep2	2	522.7135009765625	2	522.711896	1043.40924	-0.20675	-0.00010807	3.3392	0.0017454	3.1324	0.0016374	522.7134409180147	121.82	1.2367	121.63	121.25	122.48	-0.19718					53	24	3	0	0	0	0.60486	1	11796	11796		62.978	9.627	2	131430			28585	3441	23440	23467	31825	31825	32;33				-0.11072902734235868
LECDPILPV	9	Unmodified	_LECDPILPV_					0	0	0			REV__ENST00000503518.2_1_4:2967477-2967627:+|nuORF	REV__ENST00000503518.2_1_4:2967477-2967627:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	499.7650451660156	2	499.764986	997.515419	0.8461	0.00042285	-0.85495	-0.00042727	-0.0088517	-4.4238E-06	499.7649286167221	127.27	5.5139	126.2	124.35	129.86	-1.0715					229	108	5	0	0	0	0.59983	1	10099	10099		31.955	0	1	11725000	+		28586	26844	23441	23468	31826	31826					0.016561761027332977
LECIFHGW	8	Unmodified	_LECIFHGW_					0	0	0		ENST00000532201.5_3_1:90299304-90309245:+|nuORF	ENST00000532201.5_3_1:90299304-90309245:+|nuORF	ENST00000532201.5_3_1:90299304-90309245:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	502.2832336425781	2	502.736563	1003.45857	-0.92868	-0.00046688	-1.3946	-0.00070113	-2.3233	-0.001168	502.73568787902553	95.109	0.2485	93.214	93.063	93.311	-1.8956					6	4	2	0	0	0	0.028476	1	6164	6164		28.254	0	1	8081.4			28587	13321	23442	23469	31827	31827					-0.043018266631293045
LECLFRAQR	9	Unmodified	_LECLFRAQR_					0	0	0		ENST00000349155.6_3_12:115121317-115121416:-|nuORF	ENST00000349155.6_3_12:115121317-115121416:-|nuORF	ENST00000349155.6_3_12:115121317-115121416:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2738647460938	2	568.305675	1134.5968	2.1976	0.0012489	1.9946	0.0011336	4.1922	0.0023825	568.8086447164753	118.01	0.31955	118.01	117.79	118.11	0					9	6	2	0	0	0	0.027462	1	13537	13537		19.997	6.5427	1	59160			28588	10643	23443	23470	31828	31828					0.03488296585351236
LECNPVMIDA	10	Carbamidomethyl (C)	_LEC(Carbamidomethyl (C))NPVMIDA_	LEC(1)NPVMIDA		LEC(50)NPVMIDA		0	1	0		nc|ENSG00000088305|Q9UBC3-7|DNMT3B;nc|ENSG00000088305|Q9UBC3-4|DNMT3B;nc|ENSG00000088305|Q9UBC3-8|DNMT3B;nc|ENSG00000088305|Q9UBC3-3|DNMT3B;nc|ENSG00000088305|Q9UBC3-5|DNMT3B;nc|ENSG00000088305|Q9UBC3-2|DNMT3B;nc|ENSG00000088305|Q9UBC3-6|DNMT3B;ENSG00000088305|ENST00000328111|DNMT3B	nc|ENSG00000088305|Q9UBC3-7|DNMT3B	nc|ENSG00000088305|Q9UBC3-7|DNMT3B	MULTI-MSMS	OvCa99_classI_Rep5	1	581.2700805664062	2	581.267567	1160.52058	1.6836	0.00097865	-0.14342	-8.3367E-05	1.5402	0.00089528	581.2679476470689	99.915	0.71023	99.915	99.652	100.36	0					40	16	4	0	0	0	0.53807	1	11069	11069		49.536	10.283	1	2059900			28589	1788	23444	23471	31829	31829	12				-0.05325888096945164
LECSLKFVG	9	Unmodified	_LECSLKFVG_					0	0	0		nc|ENSG00000105726|Q9HD20-2|ATP13A1;ENSG00000105726|ENST00000357324|ATP13A1;EHMT1-ATP13A1|1|fusion;ENST00000491221.1_1_19:19762333-19764718:-|nuORF;ENST00000469641.5_1_19:19762333-19763700:-|nuORF;ENST00000473243.5_1_19:19762333-19765368:-|nuORF	nc|ENSG00000105726|Q9HD20-2|ATP13A1	nc|ENSG00000105726|Q9HD20-2|ATP13A1	MSMS	OvCa99_classI_Rep5	1	498.2668151855469	2	498.265153	994.515753	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.533	1	38.533	38.033	39.033	0								0	0	0	0.16648	1	2196	2196		60.972	0.85368	1				28590	786	23445	23472	31830	31830					0.018275958226013245
LEDAAQQP	8	Unmodified	_LEDAAQQP_					0	0	0		ENST00000237596.6_1_4:88959434-88959464:+|nuORF	ENST00000237596.6_1_4:88959434-88959464:+|nuORF	ENST00000237596.6_1_4:88959434-88959464:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	436.2124328613281	2	436.211432	870.408311	0.036272	1.5822E-05	-0.78276	-0.00034145	-0.74649	-0.00032563	436.2111664694348	65.494	0.67395	65.494	65.271	65.945	0					50	16	4	0	0	0	0.36941	1	6012	6012		94.006	6.2521	1	2873800			28591	9743	23446	23473	31831	31831					-0.03207657787288554
LEDAGVREL	9	Unmodified	_LEDAGVREL_					0	0	0		ENST00000525522.5_1_11:494693-499199:-|nuORF;ENST00000525701.5_1_11:494693-500690:-|nuORF;ENSG00000023191|ENST00000354420|RNH1	ENST00000525522.5_1_11:494693-499199:-|nuORF	ENST00000525522.5_1_11:494693-499199:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.26708984375	2	501.266739	1000.51892	-1.7437	-0.00087403	0.98418	0.00049334	-0.75947	-0.0003807	501.2670424595722	72.679	1.1154	69.283	68.96	70.076	-3.3961					50	22	5	0	0	0	0.084152	1	5597	5597		101.46	13.763	1	448030			28592	1036	23447	23474	31832	31832					0.01868562200957058
LEDAKLRRPM	10	Unmodified	_LEDAKLRRPM_					0	0	0		nc|ENSG00000171204|Q8IUX1-3|TMEM126B;ENST00000528361.5_1_11:85342739-85345346:+|nuORF;nc|ENSG00000171204|Q8IUX1-4|TMEM126B;nc|ENSG00000171204|Q8IUX1-5|TMEM126B;nc|ENSG00000171204|Q8IUX1-2|TMEM126B;ENSG00000171204|ENST00000358867|TMEM126B	nc|ENSG00000171204|Q8IUX1-3|TMEM126B	nc|ENSG00000171204|Q8IUX1-3|TMEM126B	MULTI-MSMS	OvCa99_classI_Rep5	1	614.8495483398438	2	614.845165	1227.67578	2.5206	0.0015498	4.2981	0.0026427	6.8187	0.0041924	614.8476921141728	75.867	0.76632	75.867	75.639	76.405	0					45	18	4	0	0	0	0.66944	1	7586	7586		15.642	3.4351	1	1623200			28593	7181	23448	23475	31833	31833					0.07104523819634778
LEDALEPLPH	10	Unmodified	_LEDALEPLPH_					0	0	0			REV__ENSG00000168758|ENST00000305476|SEMA4C	REV__ENSG00000168758|ENST00000305476|SEMA4C	MULTI-MSMS	OvCa9_classI_Rep2	2	567.297607421875	2	567.295496	1132.57644	0.96103	0.00054519	2.4931	0.0014143	3.4541	0.0019595	567.2967185608663	128.69	1.2374	128.46	128.13	129.37	-0.22696					75	24	5	0	0	0	0.59703	1	12623	12623		42.396	3.1433	1	313380	+		28594	21398	23449	23476	31834	31834					0.015454044065108974
LEDAVVEIKN	10	Unmodified	_LEDAVVEIKN_					0	0	0		ENSG00000198707|ENST00000552810|CEP290	ENSG00000198707|ENST00000552810|CEP290	ENSG00000198707|ENST00000552810|CEP290	MULTI-MSMS	OvCa9_classI_Rep2	2	565.3079223632812	2	565.308603	1128.60265	0.20207	0.00011423	-1.6397	-0.00092695	-1.4377	-0.00081272	565.3076159501649	96.83	2.3607	95.871	95.481	97.841	-0.95857					161	47	5	0	0	0	0.15262	1	8771	8771		101.6	2.2258	1	3204400			28595	8851	23450	23477	31835	31835					0.04349673578008151
LEDAVVEIKN	10	Unmodified	_LEDAVVEIKN_					0	0	0		ENSG00000198707|ENST00000552810|CEP290	ENSG00000198707|ENST00000552810|CEP290	ENSG00000198707|ENST00000552810|CEP290	MULTI-MSMS	OvCa9_classI_Rep3	3	565.3086547851562	2	565.308603	1128.60265	-0.66072	-0.00037351	-0.72628	-0.00041058	-1.387	-0.00078408	565.3081769044711	97.601	2.4979	95.841	95.465	97.963	-1.7595					157	48	5	0	0	0	0.11378	1	6510	6510		110.12	5.3733	1	5088000			28596	8851	23450	23477	31836	31836					0.04349673578008151
LEDCSRGSVS	10	Unmodified	_LEDCSRGSVS_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C;nc|ENSG00000015133|Q9P219-3|CCDC88C;nc|ENSG00000015133|Q9P219-2|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.2858276367188	2	526.737488	1051.46042	-0.55455	-0.0002921	-3.2693	-0.0017221	-3.8239	-0.0020142	526.7356045564076	103.43	0.68443	102	101.76	102.45	-1.4347					21	12	2	0	0	0	0.026915	1	7201	7201		35.618	5.1146	1	62245			28597	1000	23451	23478	31837	31837					-0.06324862435826617
LEDEKLVW	8	Unmodified	_LEDEKLVW_					0	0	0			REV__ENST00000442561.6_1_1:203734313-203734412:+|nuORF	REV__ENST00000442561.6_1_1:203734313-203734412:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	516.2833251953125	2	516.274032	1030.53351	1.2259	0.00063292	-2.2304	-0.0011515	-1.0045	-0.00051858	516.2727394663556	79.32	0.83333	79.32	79.037	79.87	0					54	20	4	0	0	0	0.6962	1	8138	8138		44.117	0	1	12625000	+		28598	25859	23452	23479	31838	31838					0.019466343491103544
LEDELVDID	9	Unmodified	_LEDELVDID_					0	0	0		tr|A0A7D6ZX98|A0A7D6ZX98_9CLOTIron-onlyhydrogenasesystemregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11155PE=4SV=1	tr|A0A7D6ZX98|A0A7D6ZX98_9CLOTIron-onlyhydrogenasesystemregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11155PE=4SV=1	tr|A0A7D6ZX98|A0A7D6ZX98_9CLOTIron-onlyhydrogenasesystemregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11155PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.306884765625	2	530.755869	1059.49719	-2.2611	-0.0012001	2.9869	0.0015853	0.72586	0.00038525	530.7577501680189	118.88	0.61927	117.53	117.31	117.93	-1.3444					15	11	2	0	0	0	0.027441	1	11142	11142		58.782	17.355	1	15065			28599	35869	23453	23480	31839	31839					-0.030182873382955222
LEDFLDYE	8	Unmodified	_LEDFLDYE_					0	0	0		nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3	nc|ENSG00000170004|Q12873-2|CHD3	nc|ENSG00000170004|Q12873-2|CHD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.3092041015625	2	522.23203	1042.44951	1.0641	0.00055572	3.1368	0.0016381	4.2009	0.0021939	522.2335410150513	103.12	0.74962	103.12	102.85	103.6	0					35	17	3	0	0	0	0.028476	1	11538	11538		57.811	5.5121	1	1133300			28600	7063	23454	23481	31840	31840					-0.07001941538487699
LEDFPKSAE	9	Unmodified	_LEDFPKSAE_					0	0	0		tr|A0A553SH31|A0A553SH31_NIACIIsoleucine--tRNAligaseOS=NialliacirculansOX=1397GN=ileSPE=3SV=1	tr|A0A553SH31|A0A553SH31_NIACIIsoleucine--tRNAligaseOS=NialliacirculansOX=1397GN=ileSPE=3SV=1	tr|A0A553SH31|A0A553SH31_NIACIIsoleucine--tRNAligaseOS=NialliacirculansOX=1397GN=ileSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.2901611328125	2	518.253297	1034.49204	-1.1968	-0.00062027	-1.59	-0.00082403	-2.7869	-0.0014443	518.2528429838213	53.841	0.71727	50.593	50.466	51.183	-3.2474					17	13	2	0	0	0	0.027432	1	3292	3292		49.536	0	1	29321			28601	33230	23455	23482	31841	31841					-0.023825464102401384
LEDFRVKT	8	Unmodified	_LEDFRVKT_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;ENST00000486268.5_1_20:34129846-34130758:+|nuORF;nc|ENSG00000125991|Q9Y282-2|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.263427734375	2	504.279649	1006.54475	0.39551	0.00019945	2.1293	0.0010737	2.5248	0.0012732	504.28066368127253	72.512	0.50338	72.512	72.374	72.877	0					21	12	2	0	0	0	0.028476	1	7103	7103		51.335	0	1	532390			28602	3759	23456	23483	31842	31842					0.04173456443231771
LEDFVPQKV	9	Unmodified	_LEDFVPQKV_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.2802734375	2	537.795132	1073.57571	2.1034	0.0011312	-2.4244	-0.0013038	-0.32098	-0.00017262	537.7933770869934	82.256	0.502	82.256	82.02	82.522	0					29	11	4	0	0	0	0.027462	1	8482	8482		42.396	19.354	1	298520			28603	5429	23457	23484	31843	31843					0.0418660975747116
LEDGDGINLN	10	Unmodified	_LEDGDGINLN_					0	0	0		ENSG00000134030|ENST00000256413|CTIF;nc|ENSG00000134030|O43310-2|CTIF	ENSG00000134030|ENST00000256413|CTIF	ENSG00000134030|ENST00000256413|CTIF	MULTI-SECPEP	OvCa9_classI_Rep3	3	530.2825927734375	2	530.251286	1058.48802	-0.44904	-0.0002381	-1.7983	-0.00095357	-2.2474	-0.0011917	530.2501360799437	89.37	1.6022	87.24	86.607	88.209	-2.1309					78	31	3	0	0	0	0.026931	1	5563	5563		37.812	13.609	1	194190			28604	4253	23458	23485	31844	31844					-0.03888635903922477
LEDGDGINLN	10	Unmodified	_LEDGDGINLN_					0	0	0		ENSG00000134030|ENST00000256413|CTIF;nc|ENSG00000134030|O43310-2|CTIF	ENSG00000134030|ENST00000256413|CTIF	ENSG00000134030|ENST00000256413|CTIF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	530.251286	1058.48802	1.8012	0.0009551	-0.87954	-0.00046638	0.92168	0.00048872	530.2507075748726	87.251	0.86537	87.251	87.096	87.962	0	-0.016706	0.0012955	NaN	35.152	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	582540			28605	4253	23458	23485							-0.03888635903922477
LEDGDGINLN	10	Unmodified	_LEDGDGINLN_					0	0	0		ENSG00000134030|ENST00000256413|CTIF;nc|ENSG00000134030|O43310-2|CTIF	ENSG00000134030|ENST00000256413|CTIF	ENSG00000134030|ENST00000256413|CTIF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.251286	1058.48802	0.99946	0.00052996	-3.2067	-0.0017004	-2.2073	-0.0011704	530.2492279950968	88.722	1.479	87.354	86.592	88.071	-1.3676	0.085879	-0.0011725	NaN	35.152	73	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137580			28606	4253	23458	23485							-0.03888635903922477
LEDGEDVRRL	10	Unmodified	_LEDGEDVRRL_					0	0	0		nc|ENSG00000141622|Q6ZSG1-2|ARK2C;ENSG00000141622|ENST00000269439|RNF165	nc|ENSG00000141622|Q6ZSG1-2|ARK2C	nc|ENSG00000141622|Q6ZSG1-2|ARK2C	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.8877258300781	3	401.210565	1200.60986	0.48221	0.00019347	0.66706	0.00026763	1.1493	0.0004611	401.210805709168	43.586	0.47331	43.586	43.393	43.866	0					17	10	2	0	0	0	0.026657	1	2910	2910		72.243	1.8447	1	128150			28607	4931	23459	23486	31845	31845					0.017584061784191363
LEDGNFLKL	9	Unmodified	_LEDGNFLKL_					0	0	0		ENSG00000178425|ENST00000319550|NT5DC1	ENSG00000178425|ENST00000319550|NT5DC1	ENSG00000178425|ENST00000319550|NT5DC1	MSMS	OvCa99_classI_Rep5	1	524.7876586914062	2	524.787307	1047.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.03	1	108.03	107.53	108.53	0								0	0	0	0.03228	1	12205	12205		87.696	7.7572	1				28608	7756	23460	23487	31846	31846					0.038183232404207956
LEDGTLLVI	9	Unmodified	_LEDGTLLVI_					0	0	0		ENSG00000143341|ENST00000271588|HMCN1;nc|ENSG00000143341|Q96RW7-2|HMCN1;HMCN1|p.T3358Sfs*4|1|0.06|ENSG00000143341|chr1:186093545-186093546|-/GT|frameshift_variant	ENSG00000143341|ENST00000271588|HMCN1	ENSG00000143341|ENST00000271588|HMCN1	MULTI-MSMS	OvCa9_classI_Rep2	2	486.7838439941406	2	486.784233	971.553913	-0.097442	-4.7433E-05	-3.2568	-0.0015853	-3.3542	-0.0016328	486.78173231785576	73.585	1.8326	71.185	70.167	72	-2.3999					51	34	2	0	0	0	0.22961	1	6000	6000		71.296	5.4925	1	551590			28609	5038	23461	23488	31847	31847					0.0669980500889551
LEDILKLK	8	Unmodified	_LEDILKLK_					0	0	0		tr|A0A7D6VUZ9|A0A7D6VUZ9_9CLOTMethyl-acceptingtransducerdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08975PE=4SV=1	tr|A0A7D6VUZ9|A0A7D6VUZ9_9CLOTMethyl-acceptingtransducerdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08975PE=4SV=1	tr|A0A7D6VUZ9|A0A7D6VUZ9_9CLOTMethyl-acceptingtransducerdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08975PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	486.3107604980469	2	486.310418	970.606283	-0.063392	-3.0828E-05	0.43301	0.00021058	0.36962	0.00017975	486.31053033420585	122.61	0.98836	122.39	122.17	123.15	-0.21803					49	19	3	0	0	0	0.60331	1	11904	11904		63.306	7.8021	1	121260			28610	35205	23462	23489	31848	31848					0.11980388142524134
LEDKHQLI	8	Unmodified	_LEDKHQLI_					0	0	0			REV__ENSG00000206075|ENST00000382771|SERPINB5	REV__ENSG00000206075|ENST00000382771|SERPINB5	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.9450988769531	2	498.279649	994.544745	1.7087	0.00085139	1.0712	0.00053375	2.7798	0.0013851	498.28004550559325	78.728	0.62245	78.728	78.415	79.037	0					24	14	2	0	0	0	0.028476	1	7982	7982		64.207	0	1	1433100	+		28611	23233	23463	23490	31849	31849					0.04725456443236453
LEDKHVLN	8	Unmodified	_LEDKHVLN_					0	0	0		nc|ENSG00000136270|Q969Z0-2|TBRG4	nc|ENSG00000136270|Q969Z0-2|TBRG4	nc|ENSG00000136270|Q969Z0-2|TBRG4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.8276672363281	2	484.263999	966.513445	-0.082892	-4.0142E-05	-2.4303	-0.0011769	-2.5132	-0.001217	484.2639177377756	78.164	0.29295	75.347	75.116	75.409	-2.8165					8	5	2	0	0	0	0.028476	1	6281	6281		44.117	0	1	23176			28612	15036	23464	23491	31850	31850					0.02884883409149097
LEDKQQIPK	9	Unmodified	_LEDKQQIPK_					0	0	0			REV__tr|A0A553SRI8|A0A553SRI8_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_01140PE=4SV=1	REV__tr|A0A553SRI8|A0A553SRI8_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_01140PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	549.8285522460938	2	549.811313	1097.60807	0.84574	0.000465	0.7677	0.00042209	1.6134	0.00088709	550.3127459047281	82.019	0.41726	80.37	80.231	80.648	-1.6485					13	7	3	0	0	0	0.027137	1	6975	6975		90.37	8.1293	1	30262	+		28613	30733	23465	23492	31851	31851					0.06317397160455585
LEDMEDQGFE	10	Oxidation (M)	_LEDM(Oxidation (M))EDQGFE_		LEDM(1)EDQGFE		LEDM(72)EDQGFE	0	0	1			REV__nc|ENSG00000168016|O15050|TRANK1	REV__nc|ENSG00000168016|O15050|TRANK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	614.7399291992188	2	614.737351	1227.46015	-1.3373	-0.0008221	3.0482	0.0018739	1.7109	0.0010518	614.739888567499	119.3	1.8196	117.96	117.63	119.45	-1.3444					101	34	5	0	0	0	0.37436	1	11192	11192		71.877	15.156	1	912670	+		28614	21335	23466	23493	31852	31852		497			-0.1444832694633078
LEDNILTS	8	Unmodified	_LEDNILTS_					0	0	0			REV__tr|A0A7D6VSG2|A0A7D6VSG2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06465PE=4SV=1	REV__tr|A0A7D6VSG2|A0A7D6VSG2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06465PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	451.7523498535156	2	452.73474	903.454927	0.77091	0.00034902	-0.73721	-0.00033376	0.033701	1.5257E-05	452.7345365219185	57.254	1.019	53.909	53.577	54.596	-3.3449					37	19	4	0	0	0	0.028476	1	3749	3749		10.866	0	1	51385	+		28615	31499	23467	23494	31853	31853					-0.0006621795599812685
LEDNILTS	8	Unmodified	_LEDNILTS_					0	0	0			REV__tr|A0A7D6VSG2|A0A7D6VSG2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06465PE=4SV=1	REV__tr|A0A7D6VSG2|A0A7D6VSG2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06465PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	452.73474	903.454927	1.2186	0.00055169	-1.4921	-0.0006755	-0.27348	-0.00012382	452.7342808046756	56.896	0.74447	54.104	53.733	54.477	-2.792	0.097636	-0.00050529	NaN	10.866	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11315	+		28616	31499	23467	23494							-0.0006621795599812685
LEDNQCSRIV	10	Unmodified	_LEDNQCSRIV_					0	0	0			REV__ENSG00000187871|ENST00000340465|GFRAL	REV__ENSG00000187871|ENST00000340465|GFRAL	MULTI-MSMS	OvCa99_classI_Rep5	1	588.7896118164062	2	588.787512	1175.56047	1.8436	0.0010855	1.6133	0.00094988	3.4569	0.0020354	588.7881207472794	136.36	0.7072	136.36	135.88	136.58	0					31	14	3	0	0	0	0.61634	1	15891	15891		40.058	2.2467	1	162170	+		28617	22672	23468	23495	31854	31854					-0.02028625102047954
LEDPRPLPGS	10	Unmodified	_LEDPRPLPGS_					0	0	0		ENST00000359518.7_1_11:6486953-6494439:-|nuORF	ENST00000359518.7_1_11:6486953-6494439:-|nuORF	ENST00000359518.7_1_11:6486953-6494439:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.8314208984375	2	540.787838	1079.56112	-0.40623	-0.00021969	-0.17128	-9.2626E-05	-0.57752	-0.00031231	540.787680126309	54.397	0.8047	54.397	54.13	54.935	0					43	18	4	0	0	0	0.027363	1	4408	4408		85.161	0	1	2381700			28618	10752	23469	23496	31855	31855					0.024525376093151863
LEDQISYL	8	Unmodified	_LEDQISYL_					0	0	0		ENSG00000179152|ENST00000342649|TCAIM;ENST00000431657.5_1_3:44409097-44442080:+|nuORF;nc|ENSG00000179152|Q8N3R3-4|TCAIM	ENSG00000179152|ENST00000342649|TCAIM	ENSG00000179152|ENST00000342649|TCAIM	MULTI-MSMS	OvCa99_classI_Rep5	1	490.75238037109375	2	490.75039	979.486227	-0.045862	-2.2507E-05	0.85815	0.00042114	0.81229	0.00039863	490.75082913067587	52.793	0.95312	52.793	52.522	53.475	0					50	21	4	0	0	0	0.42208	1	4152	4152		85.359	0	1	2241200			28619	7807	23470	23497	31856	31856					-0.004336449219067617
LEDQLLAAVVA	11	Unmodified	_LEDQLLAAVVA_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;ENST00000586052.5_1_17:76435259-76454697:-|nuORF	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	OvCa9_classI_Rep2	2	571.3258056640625	2	571.326796	1140.63904	-2.0255	-0.0011572	1.9291	0.0011021	-0.096394	-5.5072E-05	571.3277455089909	140.97	0.79214	140.75	140.53	141.32	-0.22696					36	15	3	0	0	0	0.71191	1	14118	14118		25.574	0	1	64933			28620	8432	23471	23498	31857	31857					0.07434550474727075
LEDQQNIRL	9	Unmodified	_LEDQQNIRL_					0	0	0		ENSG00000156804|ENST00000517956|FBXO32;ENST00000287396.2_1_8:124515615-124544254:-|nuORF	ENSG00000156804|ENST00000517956|FBXO32	ENSG00000156804|ENST00000517956|FBXO32	MULTI-MSMS	OvCa99_classI_Rep5	1	564.8062133789062	2	564.80402	1127.59349	0.43573	0.0002461	0.39069	0.00022066	0.82642	0.00046676	564.8041428917529	73.657	0.54875	73.657	73.359	73.907	0					41	13	4	0	0	0	0.029147	2	7225	7225;7253		136.27	22.857	1	7855900			28621	5858	23472	23499	31858;31859	31858					0.03479325012312984
LEDREDELL	9	Unmodified	_LEDREDELL_					0	0	0			REV__nc|ENSG00000142609|Q9C0B2|CFAP74	REV__nc|ENSG00000142609|Q9C0B2|CFAP74	MULTI-MSMS	OvCa9_classI_Rep2	2	566.2835083007812	2	566.280043	1130.54553	0.10353	5.8626E-05	3.9046	0.0022111	4.0082	0.0022697	566.2822211008561	96.266	1.6313	95.238	94.615	96.246	-1.0281					77	32	4	0	0	0	0.48047	1	8701	8701		44.377	1.5129	1	436830	+		28622	19794	23473	23500	31860	31860					-0.014517936983793334
LEDREVLN	8	Unmodified	_LEDREVLN_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B;nc|ENSG00000116117|Q8TEW8-5|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.799072265625	2	494.258914	986.503274	0.2449	0.00012104	3.7869	0.0018717	4.0318	0.0019928	494.2617064664008	81.197	0.24977	81.197	81.08	81.329	0					8	5	2	0	0	0	0.028476	1	8345	8345		47.657	0	1	152640			28623	3153	23474	23501	31861	31861					0.009482756839020112
LEDRSVFLL	9	Unmodified	_LEDRSVFLL_					0	0	0		tr|A0A553STR2|A0A553STR2_NIACIHelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05445PE=4SV=1	tr|A0A553STR2|A0A553STR2_NIACIHelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05445PE=4SV=1	tr|A0A553STR2|A0A553STR2_NIACIHelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05445PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	546.326904296875	2	546.308406	1090.60226	0.067695	3.6983E-05	2.3315	0.0012737	2.3992	0.0013107	546.3090250523207	105.53	1.25	104.18	103.68	104.93	-1.3482					28	21	2	0	0	0	0.027462	1	7376	7376		34.173	3.6689	1	39521			28624	34520	23475	23502	31862	31862					0.06058298648804339
LEDSLILKRL	10	Unmodified	_LEDSLILKRL_					0	0	0			REV__nc|ENSG00000143393|Q9UBF8-2|PI4KB	REV__nc|ENSG00000143393|Q9UBF8-2|PI4KB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	600.2952270507812	2	600.371538	1198.72852	0.22599	0.00013568	-0.45725	-0.00027452	-0.23126	-0.00013884	600.3712760579366	117.12	0.83754	115.76	115.3	116.14	-1.3645					27	15	2	0	0	0	0.02706	1	10900	10900		37.812	6.2817	1	18177	+		28625	19839	23476	23503	31863	31863					0.13710805154119043
LEDTKLIK	8	Unmodified	_LEDTKLIK_					0	0	0		nc|ENSG00000150753|P48643-2|CCT5;ENSG00000150753|ENST00000280326|CCT5;ENST00000502314.1_1_5:114848367-114848511:+|nuORF;ENST00000423695.6_1_5:10250480-10261980:+|nuORF	nc|ENSG00000150753|P48643-2|CCT5	nc|ENSG00000150753|P48643-2|CCT5	MULTI-MSMS	OvCa9_classI_Rep2	2	480.2921142578125	2	480.292225	958.569897	0.0078083	3.7502E-06	-0.024863	-1.1942E-05	-0.017055	-8.1914E-06	480.2920690065583	111	1.1828	110.86	110.58	111.77	-0.13961					60	23	4	0	0	0	0.38598	1	10473	10473		90.777	5.8611	1	401970			28626	5516	23477	23504	31864	31864					0.0889551124580521
LEDTWQGIL	9	Unmodified	_LEDTWQGIL_					0	0	0			REV__nc|ENSG00000196277|Q14831-5|GRM7	REV__nc|ENSG00000196277|Q14831-5|GRM7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.317138671875	2	537.776939	1073.53933	-2.1162	-0.001138	-4.1216	-0.0022165	-6.2378	-0.0033545	537.7743482480812	72.681	0.58128	69.285	69.058	69.64	-3.3961					23	11	3	0	0	0	0.027426	1	5600	5600		66.429	27.176	1	45617	+		28627	22807	23478	23505	31865	31865					0.005497328607589225
LEDVVRVLV	9	Unmodified	_LEDVVRVLV_					0	0	0			REV__ENSG00000107263|ENST00000683357|RAPGEF1	REV__ENSG00000107263|ENST00000683357|RAPGEF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.30419921875	2	521.318774	1040.623	-0.95581	-0.00049828	0.87111	0.00045413	-0.084696	-4.4153E-05	521.3189768244871	54.488	0.64217	54.488	54.293	54.935	0					37	14	4	0	0	0	0.027455	1	4445	4445		34.173	7.4796	1	1193300	+		28628	17839	23479	23506	31866	31866					0.10430889028475576
LEEAARRL	8	Unmodified	_LEEAARRL_					0	0	0			REV__ENST00000390665.8_1_X:306258-308059:-|nuORF	REV__ENST00000390665.8_1_X:306258-308059:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.7527770996094	2	479.277441	956.540328	-0.11442	-5.484E-05	0.65527	0.00031406	0.54085	0.00025922	479.2772817345225	52.043	0.50468	48.857	48.612	49.117	-3.1858					16	9	2	0	0	0	0.028476	1	3065	3065		26.796	0	1	40723	+		28629	25236	23480	23507	31867	31867					0.06031992020314192
LEEAEGHSND	10	Unmodified	_LEEAEGHSND_					0	0	0		nc|ENSG00000153820|Q2M3C7-2|SPHKAP;ENSG00000153820|ENST00000392056|SPHKAP	nc|ENSG00000153820|Q2M3C7-2|SPHKAP	nc|ENSG00000153820|Q2M3C7-2|SPHKAP	MULTI-MSMS	OvCa9_classI_Rep3	3	550.7273559570312	2	550.728175	1099.4418	0.73562	0.00040513	-2.4931	-0.001373	-1.7575	-0.00096788	550.7263877852107	120.48	1.8402	119.45	119.17	121.01	-1.0271					94	35	5	0	0	0	0.6349	1	9200	9200		37.812	3.639	1	207170			28630	5696	23481	23508	31868	31868					-0.10394700806023138
LEEAISFPK	9	Unmodified	_LEEAISFPK_					0	0	0			REV__ENSG00000163867|ENST00000357182|ZMYM6	REV__ENSG00000163867|ENST00000357182|ZMYM6	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.32373046875	2	517.281857	1032.54916	-0.59885	-0.00030977	1.4228	0.00073599	0.82395	0.00042621	517.2828955462703	103.6	0.59232	103.02	102.83	103.42	-0.57639					17	11	2	0	0	0	0.027446	1	9609	9609		35.152	0	1	12588	+		28631	20901	23482	23509	31869	31869					0.03418920866147346
LEEAPPSW	8	Unmodified	_LEEAPPSW_					0	0	0			REV__ENSG00000221829|ENST00000378643|FANCG	REV__ENSG00000221829|ENST00000378643|FANCG	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.7991027832031	2	464.724175	927.433798	-1.0492	-0.00048761	0.86498	0.00040198	-0.18425	-8.5628E-05	464.7245036825275	71.208	0.87886	67.751	67.533	68.412	-3.4563					27	17	2	0	0	0	0.028476	1	5492	5492		35.201	12.158	1	164950	+		28632	23340	23483	23510	31870	31870					-0.03282183264855121
LEEAQRVIL	9	Unmodified	_LEEAQRVIL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	535.8150634765625	2	535.813856	1069.61316	2.0766	0.0011127	0.12031	6.4465E-05	2.1969	0.0011771	535.8139100440258	82.166	1.2235	82.166	81.854	83.078	0					71	28	5	0	0	0	0.083631	2	8524	8494;8524		101.6	16.44	1	19190000			28633	6293	23484	23511	31871;31872	31872					0.08113701023103204
LEEATKILV	9	Unmodified	_LEEATKILV_					0	0	0			REV__nc|ENSG00000156261|P50990-3|CCT8	REV__nc|ENSG00000156261|P50990-3|CCT8	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.2939147949219	2	508.305332	1014.59611	2.7875	0.0014169	-2.0384	-0.0010361	0.74911	0.00038078	508.30407072339625	99.014	0.42905	99.014	98.725	99.154	0					21	10	3	0	0	0	0.027462	1	10898	10898		39.253	14.734	1	3553300	+		28634	20471	23485	23512	31873	31873					0.08939780417279053
LEEATKILV	9	Unmodified	_LEEATKILV_					0	0	0			REV__nc|ENSG00000156261|P50990-3|CCT8	REV__nc|ENSG00000156261|P50990-3|CCT8	MULTI-MATCH	OvCa9_classI_Rep2	2		2	508.305332	1014.59611	-1.0905	-0.0005543	0.6801	0.0003457	-0.41039	-0.0002086	508.30517843753245	100.03	0.9922	99.201	98.964	99.956	-0.83052	0.033222	-0.00026501	NaN	49.536	27	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67620	+		28635	20471	23485	23512							0.08939780417279053
LEEATKILV	9	Unmodified	_LEEATKILV_					0	0	0			REV__nc|ENSG00000156261|P50990-3|CCT8	REV__nc|ENSG00000156261|P50990-3|CCT8	MULTI-MATCH	OvCa9_classI_Rep3	3		2	508.305332	1014.59611	-1.214	-0.00061708	2.0016	0.0010174	0.78757	0.00040032	508.30626958898563	100.88	1.2972	99.272	99.043	100.34	-1.6053	0.10471	0.0010784	NaN	49.536	40	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79710	+		28636	20471	23485	23512							0.08939780417279053
LEEATKILV	9	Unmodified	_LEEATKILV_					0	0	0			REV__nc|ENSG00000156261|P50990-3|CCT8	REV__nc|ENSG00000156261|P50990-3|CCT8	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	508.305332	1014.59611	-0.77757	-0.00039524	0.87842	0.0004465	0.10084	5.126E-05	508.3055249227823	101.45	0.89566	99.184	98.974	99.87	-2.2665	0.016073	-6.3396E-05	NaN	49.536	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61445	+		28637	20471	23485	23512							0.08939780417279053
LEEAVWQPE	9	Unmodified	_LEEAVWQPE_					0	0	0		ENSG00000197748|ENST00000357060|CFAP43;nc|ENSG00000197748|Q8NDM7-2|CFAP43	ENSG00000197748|ENST00000357060|CFAP43	ENSG00000197748|ENST00000357060|CFAP43	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.8069458007812	2	550.766571	1099.51859	-0.68712	-0.00037845	3.444	0.0018968	2.7569	0.0015184	550.7675869261546	44.62	0.26595	44.62	44.484	44.75	0					7	5	2	0	0	0	0.027403	1	3016	3016		51.193	24.397	1	71274			28638	8744	23486	23513	31874	31874					-0.027188575189029507
LEEAYIPVV	9	Unmodified	_LEEAYIPVV_					0	0	0		ENSG00000167104|ENST00000349552|BPIFB6	ENSG00000167104|ENST00000349552|BPIFB6	ENSG00000167104|ENST00000349552|BPIFB6	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.32373046875	2	516.784233	1031.55391	-0.57032	-0.00029473	3.6195	0.0018705	3.0492	0.0015758	516.7851400787159	103.87	0.4935	103.3	103.03	103.52	-0.57639					12	9	2	0	0	0	0.027462	1	9609	9609		29.15	0	1	18589			28639	6755	23487	23514	31875	31875					0.039398050088948366
LEECTVDYD	9	Unmodified	_LEECTVDYD_					0	0	0		tr|A0A7D6VT01|A0A7D6VT01_9CLOT4-hydroxy-tetrahydrodipicolinatereductaseOS=ClostridiumintestinaleOX=36845GN=dapBPE=3SV=1	tr|A0A7D6VT01|A0A7D6VT01_9CLOT4-hydroxy-tetrahydrodipicolinatereductaseOS=ClostridiumintestinaleOX=36845GN=dapBPE=3SV=1	tr|A0A7D6VT01|A0A7D6VT01_9CLOT4-hydroxy-tetrahydrodipicolinatereductaseOS=ClostridiumintestinaleOX=36845GN=dapBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	543.3231201171875	2	543.71843	1085.42231	1.1172	0.00060743	0.90007	0.00048938	2.0172	0.0010968	543.7184869014346	120.14	0.39379	119.12	119.02	119.41	-1.0271					12	7	2	0	0	0	0.027462	1	9161	9161		44.117	6.3053	1	10954			28640	35072	23488	23515	31876	31876					-0.11698793141158603
LEEDGLHLV	9	Unmodified	_LEEDGLHLV_					0	0	0		ENSG00000260458|ENST00000567955|KCNJ18	ENSG00000260458|ENST00000567955|KCNJ18	ENSG00000260458|ENST00000567955|KCNJ18	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.30859375	2	512.769114	1023.52368	-0.56883	-0.00029168	2.3768	0.0012187	1.8079	0.00092705	512.7702754105815	77.693	1.1078	75.34	74.89	75.998	-2.3527					32	19	2	0	0	0	0.027462	1	4028	4028		33.516	1.5607	1	29222			28641	9494	23489	23516	31877	31877					0.012854463437292907
LEEDLKGYL	9	Unmodified	_LEEDLKGYL_					0	0	0		ERC1-CACNA1C|23|fusion;ERC1-CACNA1C|37|fusion;ERC1-CACNA1C|9|fusion;ERC1-CACNA1C|18|fusion;ERC1-CACNA1C|11|fusion;ERC1-CACNA1C|17|fusion;ERC1-CACNA1C|14|fusion;ERC1-CACNA1C|35|fusion;ERC1-CACNA1C|33|fusion;ERC1-CACNA1C|39|fusion;ERC1-CACNA1C|25|fusion;ERC1-CACNA1C|5|fusion;ERC1-CACNA1C|43|fusion;ERC1-CACNA1C|38|fusion;ERC1-CACNA1C|44|fusion;ERC1-CACNA1C|45|fusion;ERC1-CACNA1C|31|fusion;ERC1-CACNA1C|32|fusion;ERC1-CACNA1C|40|fusion;ERC1-CACNA1C|30|fusion;ERC1-CACNA1C|34|fusion;ERC1-CACNA1C|36|fusion;ERC1-CACNA1C|41|fusion;ERC1-CACNA1C|8|fusion;ERC1-CACNA1C|22|fusion;ERC1-CACNA1C|19|fusion;ERC1-CACNA1C|46|fusion;ERC1-CACNA1C|6|fusion;ERC1-CACNA1C|3|fusion;ERC1-CACNA1C|1|fusion;ERC1-CACNA1C|4|fusion;ERC1-CACNA1C|42|fusion;ERC1-CACNA1C|13|fusion;ERC1-CACNA1C|29|fusion;ERC1-CACNA1C|12|fusion;ERC1-CACNA1C|2|fusion;ERC1-CACNA1C|10|fusion;ERC1-CACNA1C|16|fusion;ERC1-CACNA1C|20|fusion;ERC1-CACNA1C|26|fusion;ERC1-CACNA1C|21|fusion;ERC1-CACNA1C|15|fusion;ERC1-CACNA1C|24|fusion;ERC1-CACNA1C|27|fusion;ERC1-CACNA1C|7|fusion;ERC1-CACNA1C|28|fusion;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;CACNA1C|p.V1586Wfs*9|1|0.1|ENSG00000151067|chr12:2666770-2666770|C/-|frameshift_variant;CACNA1C|p.S1498Afs*17|1|0.18|ENSG00000151067|chr12:2664940-2664940|A/-|frameshift_variant;CACNA1C|p.I1373Sfs*65|1|0.06|ENSG00000151067|chr12:2651667-2651668|-/G|frameshift_variant;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C;nc|ENSG00000157388|Q01668-2|CACNA1D;nc|ENSG00000157388|Q01668-4|CACNA1D;CACNA1D|p.Q1955Pfs*19|1|0.09|ENSG00000157388|chr3:53808762-53808763|-/CTCCTCCTTCAGAGAGTGTTGTGCAG|frameshift_variant;nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D	ERC1-CACNA1C|23|fusion;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000157388|Q01668-2|CACNA1D	ERC1-CACNA1C|23|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	540.28662109375	2	540.284597	1078.55464	2.5362	0.0013703	0.45951	0.00024827	2.9957	0.0016185	540.2847767972073	86.315	1.1424	86.315	85.912	87.054	0					81	27	4	0	0	0	0.083631	2	9086	9086;9112		101.6	0	1	4300900			28642	14314;15092;15117	23490	23517	31878;31879	31878					0.018505996579506245
LEEDLLVEV	9	Unmodified	_LEEDLLVEV_					0	0	0		ENSG00000100288|ENST00000406938|CHKB	ENSG00000100288|ENST00000406938|CHKB	ENSG00000100288|ENST00000406938|CHKB	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.8310546875	2	529.78443	1057.55431	-0.4419	-0.00023411	1.5999	0.00084759	1.158	0.00061348	529.7848760893827	55.91	0.49409	55.91	55.641	56.135	0					22	11	3	0	0	0	0.027441	1	4576	4576		45.952	0	1	442700			28643	2039	23491	23518	31880	31880					0.02783179938091962
LEEDNRIAL	9	Unmodified	_LEEDNRIAL_					0	0	0			REV__ENST00000479986.1_1_6:27858584-27860837:-|nuORF	REV__ENST00000479986.1_1_6:27858584-27860837:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.8168334960938	2	536.785296	1071.55604	-1.2005	-0.00064439	0.28114	0.00015091	-0.91931	-0.00049347	536.7851093220048	99.02	0.571	96.694	96.484	97.055	-2.3253					15	10	2	0	0	0	0.027418	1	8796	8796		44.377	0	1	20801	+		28644	20995	23492	23519	31881	31881					0.02312233746692982
LEEDQRAW	8	Unmodified	_LEEDQRAW_					0	0	0		nc|ENSG00000167702|Q96AC6|KIFC2;ENSG00000167702|ENST00000645548|KIFC2;ENST00000533114.1_1_8:145692923-145693538:+|nuORF	nc|ENSG00000167702|Q96AC6|KIFC2	nc|ENSG00000167702|Q96AC6|KIFC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.7464599609375	2	523.748713	1045.48287	3.3823	0.0017715	-0.59085	-0.00030946	2.7914	0.001462	523.7485623179307	132.52	0.54019	131.02	130.8	131.34	-1.5015					19	10	2	0	0	0	0.66704	1	12764	12764		50.025	12.865	1	16827			28645	6835	23493	23520	31882	31882					-0.038048949759058814
LEEDVNKLIN	10	Unmodified	_LEEDVNKLIN_					0	0	0		tr|A0A7D7A3M3|A0A7D7A3M3_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00310PE=4SV=1	tr|A0A7D7A3M3|A0A7D7A3M3_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00310PE=4SV=1	tr|A0A7D7A3M3|A0A7D7A3M3_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00310PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	593.8193359375	2	593.819335	1185.62412	0.42905	0.00025478	-0.63897	-0.00037943	-0.20991	-0.00012465	593.8189020934431	127.2	1.333	126.96	126.69	128.02	-0.2359					73	26	4	0	0	0	0.5675	1	12456	12456		45.972	0	1	411120			28646	36120	23494	23521	31883	31883					0.03873058606745872
LEEDVVGQR	9	Unmodified	_LEEDVVGQR_					0	0	0		ENSG00000169962|ENST00000339381|TAS1R3	ENSG00000169962|ENST00000339381|TAS1R3	ENSG00000169962|ENST00000339381|TAS1R3	MULTI-SECPEP	OvCa9_classI_Rep3	3	523.3024291992188	2	522.769645	1043.52474	-2.1609	-0.0011297	0.49692	0.00025978	-1.664	-0.00086988	522.7694844282248	140.13	0.54237	139.09	138.89	139.43	-1.0339					20	10	3	0	0	0	0.027462	1	11534	11534		40.778	18.818	1	14609			28647	7059	23495	23522	31884	31884					0.004716607126283634
LEEEDKDYLK	10	Unmodified	_LEEEDKDYLK_					0	0	0		nc|ENSG00000150275|Q96QU1-4|PCDH15	nc|ENSG00000150275|Q96QU1-4|PCDH15	nc|ENSG00000150275|Q96QU1-4|PCDH15	MULTI-SECPEP	OvCa99_classI_Rep5	1	427.5243835449219	3	427.878481	1280.61361	-0.19569	-8.3733E-05	-2.5411	-0.0010873	-2.7368	-0.001171	427.8773280413592	59.99	0.51231	59.99	59.802	60.314	0					33	12	4	0	0	0	0.026856	1	5243	5243		41.08	16.804	1	1404300			28648	15089	23496	23523	31885	31885					-0.015469688383745961
LEEELPIP	8	Unmodified	_LEEELPIP_					0	0	0			REV__nc|ENSG00000152582|Q9C093-2|SPEF2	REV__nc|ENSG00000152582|Q9C093-2|SPEF2	MULTI-MSMS	OvCa99_classI_Rep5	1	470.25701904296875	2	470.255308	938.496064	-0.50673	-0.00023829	1.7323	0.00081462	1.2256	0.00057632	470.25585548179026	65.423	0.8324	65.423	65.19	66.022	0					49	20	3	0	0	0	0.64377	1	5999	5999		54.765	0	1	2463000	+		28649	20295	23497	23524	31886	31886					0.024355430834930303
LEEEQSEPK	9	Unmodified	_LEEEQSEPK_					0	0	0			REV__ENSG00000215148|ENST00000399677|PRSS41	REV__ENSG00000215148|ENST00000399677|PRSS41	MULTI-SECPEP	OvCa9_classI_Rep3	3	545.3038940429688	2	544.758943	1087.50333	-0.69882	-0.00038069	-0.24399	-0.00013292	-0.94281	-0.00051361	544.7590263953358	102.24	0.78191	100.72	100.37	101.15	-1.5211					25	14	3	0	0	0	0.027462	1	7046	7046		25.574	0	1	26758	+		28650	23312	23498	23525	31887	31887					-0.03691769106740139
LEEERSLLM	9	Unmodified	_LEEERSLLM_					0	0	0			REV__sp|Q6SWC5|UL05_HCMVMProteinUL5OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL5PE=3SV=1	REV__sp|Q6SWC5|UL05_HCMVMProteinUL5OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL5PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	560.289306640625	2	560.289356	1118.56416	1.7057	0.00095569	0.82728	0.00046352	2.533	0.0014192	560.2895655443789	83.437	0.93141	83.437	83.161	84.093	0					40	21	3	0	0	0	0.16562	1	8684	8684		82.241	2.7895	1	1256500	+		28651	29428	23499	23526	31888	31888					0.009620446718372477
LEEFLASTQR	10	Unmodified	_LEEFLASTQR_					0	0	0		ENSG00000104805|ENST00000405315|NUCB1;ENST00000492367.1_1_19:49422384-49425678:+|nuORF	ENSG00000104805|ENST00000405315|NUCB1	ENSG00000104805|ENST00000405315|NUCB1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	597.8558349609375	2	597.311677	1192.6088	-1.9845	-0.0011853	1.3871	0.00082851	-0.5974	-0.00035683	598.315764799951	149.58	0.60165	148.15	147.82	148.42	-1.4344					16	11	3	0	0	0	0.026681	1	14737	14737		52.937	3.4952	1	17229			28652	2393	23500	23527	31889	31889					0.02020191809538119
LEEFLKAKNI	10	Unmodified	_LEEFLKAKNI_					0	0	0		tr|A0A7D6VXH8|A0A7D6VXH8_9CLOTBglGfamilytranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12975PE=4SV=1	tr|A0A7D6VXH8|A0A7D6VXH8_9CLOTBglGfamilytranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12975PE=4SV=1	tr|A0A7D6VXH8|A0A7D6VXH8_9CLOTBglGfamilytranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12975PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.7306823730469	3	402.236051	1203.68632	2.0238	0.00081406	0.35413	0.00014244	2.378	0.00095651	402.2360542171627	74.452	0.53989	74.452	74.056	74.596	0					16	13	2	0	0	0	0.026906	1	7382	7382		15.333	0	1	338670			28653	35283	23501	23528	31890	31890					0.09262829745716772
LEEHELVKY	9	Unmodified	_LEEHELVKY_					0	0	0		tr|A0A7D6VUK4|A0A7D6VUK4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01955PE=4SV=1	tr|A0A7D6VUK4|A0A7D6VUK4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01955PE=4SV=1	tr|A0A7D6VUK4|A0A7D6VUK4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01955PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.7749633789062	2	580.303321	1158.59209	-0.41658	-0.00024174	-2.5242	-0.0014648	-2.9408	-0.0017065	580.3033429706161	63.626	0.12038	63.626	63.57	63.69	0					4	2	2	0	0	0	0.027462	1	5730	5730		16.473	0	1	148410			28654	35190	23502	23529	31891	31891					0.019136909235839994
LEEIEKLDPP	10	Unmodified	_LEEIEKLDPP_					0	0	0			REV__tr|A0A7D6ZX34|A0A7D6ZX34_9CLOTATP-dependentClpproteaseATP-bindingsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_21475PE=3SV=1	REV__tr|A0A7D6ZX34|A0A7D6ZX34_9CLOTATP-dependentClpproteaseATP-bindingsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_21475PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	591.373046875	2	591.816261	1181.61797	-0.74315	-0.00043981	2.0584	0.0012182	1.3153	0.00077841	591.817484699784	73.609	0.72606	70.213	69.736	70.462	-3.3961					21	13	2	0	0	0	0.026871	1	5725	5725		29.15	0	1	48971	+		28655	32313	23503	23530	31892	31892					0.034425403751811245
LEEIKKVSIY	10	Unmodified	_LEEIKKVSIY_					0	0	0			REV__ENST00000261396.5_1_1:229584927-229588291:-|nuORF	REV__ENST00000261396.5_1_1:229584927-229588291:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3562622070312	2	611.358096	1220.70164	-3.1571	-0.0019301	-0.12375	-7.5658E-05	-3.2809	-0.0020058	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.71192	1	12881	12881		29.15	2.4566	1	666990	+		28656	23946	23504	23531	31893	31893					0.1001169654291516
LEEIQLIQN	9	Unmodified	_LEEIQLIQN_					0	0	0			REV__tr|A0A7D6ZWP7|A0A7D6ZWP7_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08850PE=4SV=1	REV__tr|A0A7D6ZWP7|A0A7D6ZWP7_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08850PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	550.3018798828125	2	550.303321	1098.59209	0.61725	0.00033968	-3.7608	-0.0020696	-3.1436	-0.0017299	550.3010836773232	141.86	2.0274	141.86	141.49	143.51	0					101	40	5	0	0	0	0.35444	1	16625	16625		56.721	1.9447	1	2049300	+		28657	32297	23505	23532	31894	31894					0.04673690923596041
LEEIQTKLEAN	11	Unmodified	_LEEIQTKLEAN_					0	0	0			REV__ENSG00000140044|ENST00000651602|JDP2	REV__ENSG00000140044|ENST00000651602|JDP2	MULTI-MSMS	OvCa9_classI_Rep2	2	644.8456420898438	2	644.343175	1286.6718	-5.9104	-0.0038083	3.5609	0.0022944	-2.3495	-0.0015139	644.3481939078952	161.98	1.0774	161.75	161.23	162.31	-0.22696					70	20	6	0	0	0	0.7246	1	16502	16502		20.837	0	1	104250	+		28658	19652	23506	23533	31895	31895					0.03992712806916643
LEEIVLPPL	9	Unmodified	_LEEIVLPPL_					0	0	0		ENST00000320017.10_1_3:47459280-47460886:-|nuORF;ENST00000265565.9_1_3:47459280-47460886:-|nuORF	ENST00000320017.10_1_3:47459280-47460886:-|nuORF	ENST00000320017.10_1_3:47459280-47460886:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.80914306640625	2	511.810251	1021.60595	0.46078	0.00023583	-3.6356	-0.0018607	-3.1748	-0.0016249	511.80831442868	37.858	1.6886	34.966	34.541	36.23	-2.8925					89	33	4	0	0	0	0.59983	1	1456	1456		31.955	1.4512	1	929280			28659	9952	23507	23534	31896	31896					0.09600968422660117
LEEIWEGSP	9	Unmodified	_LEEIWEGSP_					0	0	0			REV__nc|ENSG00000151490|Q16827-5|PTPRO	REV__nc|ENSG00000151490|Q16827-5|PTPRO	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.825439453125	2	530.253297	1058.49204	1.1325	0.00060054	-4.152	-0.0022016	-3.0194	-0.0016011	531.7544456194371	155.45	0.71692	155.45	155.17	155.89	0					31	13	5	0	0	0	0.027448	1	18185	18185		27.882	0	1	37171	+		28660	20236	23508	23535	31897	31897					-0.03486546410226765
LEEIYRVSK	9	Unmodified	_LEEIYRVSK_					0	0	0			REV__nc|ENSG00000136828|Q5JS13-4|RALGPS1	REV__nc|ENSG00000136828|Q5JS13-4|RALGPS1	MULTI-SECPEP	OvCa9_classI_Rep2	2	567.8464965820312	2	568.819138	1135.62372	0.13583	7.7261E-05	-1.406	-0.00079978	-1.2702	-0.00072252	568.8180384045611	71.055	0.78699	68.524	68.258	69.045	-2.531					39	14	3	0	0	0	0.027462	1	5755	5755		12.812	0	1	289240	+		28661	19409	23509	23536	31898	31898					0.06133683677512636
LEEKAIKT	8	Unmodified	_LEEKAIKT_					0	0	0		tr|A0A7D7A581|A0A7D7A581_9CLOTArgininosuccinatesynthaseOS=ClostridiumintestinaleOX=36845GN=argGPE=3SV=1	tr|A0A7D7A581|A0A7D7A581_9CLOTArgininosuccinatesynthaseOS=ClostridiumintestinaleOX=36845GN=argGPE=3SV=1	tr|A0A7D7A581|A0A7D7A581_9CLOTArgininosuccinatesynthaseOS=ClostridiumintestinaleOX=36845GN=argGPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.7861022949219	2	466.276575	930.538597	-0.15877	-7.4031E-05	0.40913	0.00019077	0.25036	0.00011674	466.2763801161896	73.122	0.76254	73.122	72.915	73.678	0					39	18	3	0	0	0	0.028476	1	7138	7138		9.7057	0	1	1052700			28662	36161	23510	23537	31899	31899					0.07054938211717854
LEEKAIKT	8	Unmodified	_LEEKAIKT_					0	0	0		tr|A0A7D7A581|A0A7D7A581_9CLOTArgininosuccinatesynthaseOS=ClostridiumintestinaleOX=36845GN=argGPE=3SV=1	tr|A0A7D7A581|A0A7D7A581_9CLOTArgininosuccinatesynthaseOS=ClostridiumintestinaleOX=36845GN=argGPE=3SV=1	tr|A0A7D7A581|A0A7D7A581_9CLOTArgininosuccinatesynthaseOS=ClostridiumintestinaleOX=36845GN=argGPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	466.276575	930.538597	-0.6524	-0.0003042	0.47811	0.00022293	-0.17429	-8.1265E-05	466.2766918121804	75.374	1.8147	73.52	72.964	74.779	-1.854	0.17109	0.00012744	NaN	13.454	70	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196740			28663	36161	23510	23537							0.07054938211717854
LEEKTQEYWQT	11	Unmodified	_LEEKTQEYWQT_					0	0	0			REV__ENSG00000153107|ENST00000341068|ANAPC1	REV__ENSG00000153107|ENST00000341068|ANAPC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.2624816894531	3	485.564785	1453.67252	0.023702	1.1509E-05	-3.2942	-0.0015995	-3.2705	-0.001588	485.56314468683297	57.159	0.94376	57.159	56.788	57.732	0					37	21	2	0	0	0	0.02616	1	4853	4853		14.779	6.7445	1	1941600	+		28664	20321	23511	23538	31900	31900					-0.03616492544051653
LEELGLLI	8	Unmodified	_LEELGLLI_					0	0	0			REV__ENST00000273859.7_1_4:47593407-47593530:+|nuORF	REV__ENST00000273859.7_1_4:47593407-47593530:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	450.2738342285156	2	450.276044	898.537535	-0.13529	-6.0919E-05	-2.8912	-0.0013019	-3.0265	-0.0013628	450.27464677011136	147.54	1.7967	147.31	146.82	148.62	-0.22696					100	35	5	0	0	0	0.74679	1	14901	14901		28.254	0	1	344090	+		28665	24086	23512	23539	31901	31901					0.08420723842812095
LEELGLPLQ	9	Unmodified	_LEELGLPLQ_					0	0	0		SOHLH2|p.P152L|1|0.06|ENSG00000120669|chr13:36191870-36191870|G/A|missense_variant	SOHLH2|p.P152L|1|0.06|ENSG00000120669|chr13:36191870-36191870|G/A|missense_variant	SOHLH2|p.P152L|1|0.06|ENSG00000120669|chr13:36191870-36191870|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.7762145996094	2	506.289682	1010.56481	-0.45979	-0.00023279	3.2028	0.0016215	2.743	0.0013887	506.7936372535105	55.355	0.16758	55.355	55.273	55.44	0					5	3	2	0	0	0	0.027462	1	4516	4516		30.504	0	1	77447			28666	32841	23513	23540	31902	31902					0.059952073831937014
LEELGVLPT	9	Unmodified	_LEELGVLPT_					0	0	0			REV__ENSG00000128594|ENST00000249363|LRRC4	REV__ENSG00000128594|ENST00000249363|LRRC4	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.7740783691406	2	485.776408	969.538263	-1.0285	-0.00049961	-2.4659	-0.0011979	-3.4944	-0.0016975	485.7752351689222	43.149	1.3869	40.142	39.801	41.188	-3.0074					74	26	5	0	0	0	0.59983	1	2065	2065		31.955	1.4512	1	1096600	+		28667	18861	23514	23541	31903	31903					0.05227518491858518
LEELKLAIL	9	Unmodified	_LEELKLAIL_					0	0	0			REV__ENSG00000111300|ENST00000261745|NAA25	REV__ENSG00000111300|ENST00000261745|NAA25	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.29833984375	2	521.33135	1040.64815	0.2404	0.00012533	3.0444	0.0015871	3.2848	0.0017125	521.333767461048	114.72	1.8984	114.72	114.38	116.28	0					51	40	2	0	0	0	0.027447	1	13253	13253		56.721	9.0637	1	309320	+		28668	18025	23515	23542	31904	31904					0.12944943831030287
LEELQLFKN	9	Unmodified	_LEELQLFKN_					0	0	0		nc|ENSG00000091127|Q96PZ0-2|PUS7;ENSG00000091127|ENST00000469408|PUS7	nc|ENSG00000091127|Q96PZ0-2|PUS7	nc|ENSG00000091127|Q96PZ0-2|PUS7	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.31298828125	2	567.313689	1132.61282	0.9405	0.00053356	-1.4514	-0.00082342	-0.51093	-0.00028986	567.3126999442823	115.55	1.0391	114.15	113.82	114.86	-1.3977					45	20	4	0	0	0	0.12515	1	10780	10780		90.37	10.919	1	282240			28669	1862	23516	23543	31905	31905					0.051822813032458726
LEELQLFKN	9	Unmodified	_LEELQLFKN_					0	0	0		nc|ENSG00000091127|Q96PZ0-2|PUS7;ENSG00000091127|ENST00000469408|PUS7	nc|ENSG00000091127|Q96PZ0-2|PUS7	nc|ENSG00000091127|Q96PZ0-2|PUS7	MULTI-MATCH	OvCa99_classI_Rep5	1		2	567.313689	1132.61282	0.20285	0.00011508	-0.71213	-0.000404	-0.50928	-0.00028892	567.3139230147516	114.52	0.40687	114.52	114.29	114.7	0	0.24982	-0.00033554	NaN	90.37	15	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153560			28670	1862	23516	23543							0.051822813032458726
LEELRTQIL	9	Unmodified	_LEELRTQIL_					0	0	0		nc|ENSG00000156958|Q01415-2|GALK2;ENSG00000156958|ENST00000560031|GALK2;ENST00000561014.1_1_15:49531438-49610381:+|nuORF;ENST00000560119.5_1_15:49527865-49611209:+|nuORF	nc|ENSG00000156958|Q01415-2|GALK2	nc|ENSG00000156958|Q01415-2|GALK2	MULTI-MSMS	OvCa99_classI_Rep5	1	557.8291625976562	2	557.826963	1113.63937	1.196	0.00066716	1.5395	0.00085876	2.7355	0.0015259	557.8276473095889	132.06	1.6479	132.06	131.34	132.99	0					82	34	4	0	0	0	0.26076	1	15333	15333		67.494	0	1	1556100			28671	5865	23517	23544	31906	31906					0.08709970194581729
LEELTIIGKMT	11	Unmodified	_LEELTIIGKMT_					0	0	0			REV__tr|A0A7D6ZPY2|A0A7D6ZPY2_9CLOTCarbamoylphosphatesynthasesmallchainOS=ClostridiumintestinaleOX=36845GN=carAPE=3SV=1	REV__tr|A0A7D6ZPY2|A0A7D6ZPY2_9CLOTCarbamoylphosphatesynthasesmallchainOS=ClostridiumintestinaleOX=36845GN=carAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	415.5887145996094	3	416.568701	1246.68428	-0.21127	-8.8007E-05	2.5007	0.0010417	2.2894	0.0009537	416.5696471066584	58.729	0.50188	55.337	55.051	55.553	-3.392					13	9	2	0	0	0	0.025746	1	3857	3857		12.433	0	1	19566	+		28672	32142	23518	23545	31907	31907					0.07080032945577841
LEEMDQEFG	9	Unmodified	_LEEMDQEFG_					0	0	0		ENSG00000175467|ENST00000312397|SART1;ENST00000529532.5_1_11:65732585-65733974:+|nuORF	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-MSMS	OvCa99_classI_Rep5	1	549.2293090820312	2	549.226422	1096.43829	3.037	0.001668	2.2873	0.0012562	5.3243	0.0029242	549.2274796439616	88.561	0.62395	88.561	88.298	88.922	0					33	14	3	0	0	0	0.12365	1	9413	9413		90.777	0	1	2725200			28673	7547	23519	23546	31908	31908					-0.10607086904246898
LEEMDQEFG	9	Unmodified	_LEEMDQEFG_					0	0	0		ENSG00000175467|ENST00000312397|SART1;ENST00000529532.5_1_11:65732585-65733974:+|nuORF	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	549.226422	1096.43829	2.0988	0.0011527	1.1554	0.00063456	3.2541	0.0017873	549.2271313542309	89.899	1.1386	88.597	88.037	89.176	-1.302	0.018201	-0.00060912	NaN	90.777	30	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17707			28674	7547	23519	23546							-0.10607086904246898
LEENLLYAP	9	Unmodified	_LEENLLYAP_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-SECPEP	OvCa9_classI_Rep3	3	530.3092041015625	2	531.279315	1060.54408	0.55874	0.00029685	-1.718	-0.00091273	-1.1592	-0.00061588	531.278130214836	105.09	0.9874	103.74	103.36	104.35	-1.3482					21	18	2	0	0	0	0.027164	1	7396	7396		49.442	0	1	21764			28675	4112	23520	23547	31909	31909					0.01622617003522464
LEENTPIVFA	10	Unmodified	_LEENTPIVFA_					0	0	0			REV__tr|A0A7D6VX20|A0A7D6VX20_9CLOTAcetatekinaseOS=ClostridiumintestinaleOX=36845GN=ackAPE=3SV=1	REV__tr|A0A7D6VX20|A0A7D6VX20_9CLOTAcetatekinaseOS=ClostridiumintestinaleOX=36845GN=ackAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	566.318603515625	2	566.797872	1131.58119	0.67591	0.0003831	-2.5722	-0.0014579	-1.8963	-0.0010748	566.7951273451071	56.242	0.96014	52.948	52.668	53.628	-3.2944					40	18	3	0	0	0	0.026891	1	3574	3574		39.253	3.6345	1	47402	+		28676	31762	23521	23548	31910	31910					0.02066288549303863
LEENVHEVL	9	Unmodified	_LEENVHEVL_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89971082-89977643:+|nuORF;ENST00000563484.1_1_16:89971421-89975542:+|nuORF;chr16:89900794-89905029|124|25.31|0.04|9.37|+|0|TCF25,None|1	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-MSMS	OvCa99_classI_Rep5	1	541.2813110351562	2	541.279846	1080.54514	2.1108	0.0011425	0.27403	0.00014833	2.3848	0.0012908	541.2798889491341	76.858	1.0571	76.858	76.365	77.422	0					48	25	3	0	0	0	0.029147	1	7716	7716		136.27	37.639	1	4476300			28677	4889	23522	23549	31911	31911					0.008088313724329055
LEEPFFYNWRR	11	Unmodified	_LEEPFFYNWRR_					0	0	0			REV__nc|ENSG00000164306|Q96LW4-2|PRIMPOL	REV__nc|ENSG00000164306|Q96LW4-2|PRIMPOL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.8201904296875	3	519.593009	1555.7572	3.3519	0.0017416	-3.5758	-0.0018579	-0.22385	-0.00011631	519.9245789075242	133.12	0.34358	131.59	131.31	131.66	-1.5257					9	6	2	0	0	0	0.02625	1	12839	12839		18.531	9.3192	1	11249	+		28678	20971	23523	23550	31912	31912					0.0015492278321289632
LEEPIDLSCGS	11	Unmodified	_LEEPIDLSCGS_					0	0	0			REV__ENST00000582263.1_1_17:38092096-38095731:+|nuORF	REV__ENST00000582263.1_1_17:38092096-38095731:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.7879028320312	2	581.768454	1161.52235	-0.61901	-0.00036012	2.0252	0.0011782	1.4062	0.00081808	581.769740763451	68.628	0.1257	68.628	68.523	68.649	0					4	2	2	0	0	0	0.025457	1	6490	6490		29.17	0	1	197130	+		28679	27827	23524	23551	31913	31913					-0.051945558073384746
LEEPIKVKVEV	11	Unmodified	_LEEPIKVKVEV_					0	0	0			REV__ENST00000560710.1_1_15:79184565-79186592:+|nuORF	REV__ENST00000560710.1_1_15:79184565-79186592:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8840942382812	2	641.884478	1281.7544	-4.605	-0.0029559	1.1694	0.00075061	-3.4356	-0.0022053	641.8852528126143	150.24	3.761	149.29	147.05	150.81	-0.95119					231	74	4	0	0	0	0.71789	1	12746	12746		23.523	1.5628	1	246170	+		28680	22529	23525	23552	31914	31914					0.12479654605704127
LEEPQCIW	8	Unmodified	_LEEPQCIW_					0	0	0			REV__nc|ENSG00000235931|A4QN01|LINC01553	REV__nc|ENSG00000235931|A4QN01|LINC01553	MULTI-MSMS	OvCa9_classI_Rep3	3	509.2408142089844	2	509.239135	1016.46372	1.5833	0.00080629	1.5319	0.00078011	3.1152	0.0015864	509.2399801613584	60.9	1.9539	57.832	56.783	58.737	-3.0685					78	52	2	0	0	0	0.75991	1	2080	2080		21.702	0.7554	1	24864	+		28681	29152	23526	23553	31915	31915					-0.043855675911686376
LEEPRLIL	8	Unmodified	_LEEPRLIL_					0	0	0			REV__ENSG00000088205|ENST00000263239|DDX18	REV__ENSG00000088205|ENST00000263239|DDX18	MULTI-MSMS	OvCa9_classI_Rep4_	4	491.80072021484375	2	491.800217	981.585882	-1.7475	-0.00085943	1.401	0.00068899	-0.34656	-0.00017044	491.80078103129136	107.83	3.5166	105.95	105.59	109.11	-1.8785					134	68	3	0	0	0	0.58851	1	9866	9866		66.429	0	1	2385200	+		28682	17173	23527	23554	31916	31916					0.09435217482723601
LEEPSDLKSQS	11	Unmodified	_LEEPSDLKSQS_					0	0	0			REV__ENSG00000070950|ENST00000264926|RAD18	REV__ENSG00000070950|ENST00000264926|RAD18	MULTI-MSMS	OvCa99_classI_Rep5	1	616.8095703125	2	616.803882	1231.59321	1.57	0.00096837	3.4437	0.0021241	5.0137	0.0030924	616.806231797573	119.92	0.56779	119.92	119.62	120.18	0					44	12	6	0	0	0	0.68399	1	13761	13761		35.152	2.3396	1	477830	+		28683	16894	23528	23555	31917	31917					-0.013321394981858248
LEEPVGGGG	9	Unmodified	_LEEPVGGGG_					0	0	0			REV__ENSG00000178188|ENST00000684370|SH2B1	REV__ENSG00000178188|ENST00000684370|SH2B1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	407.5798645019531	2	407.7007	813.386848	0.99749	0.00040668	0.96917	0.00039513	1.9667	0.00080181	407.7000236723081	58.43	0.44788	55.038	54.902	55.35	-3.392					11	8	2	0	0	0	0.027449	1	3884	3884		31.955	7.7521	1	12712	+		28684	22049	23529	23556	31918	31918					-0.02731042815969431
LEEQGSIAL	9	Unmodified	_LEEQGSIAL_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;SPTAN1|p.Q1734Rfs*19|1|0.63|ENSG00000197694|chr9:128615697-128615725|CCAAGTAAAGGACAAGAGGGACACCATCA/-|frameshift_variant;SPTAN1|p.M1752Ifs*16|1|0.07|ENSG00000197694|chr9:128615752-128615753|-/TTCCTGAGTTCTTATG|frameshift_variant	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	OvCa99_classI_Rep5	1	480.2558898925781	2	480.25584	958.497126	2.7508	0.0013211	-0.08283	-3.978E-05	2.6679	0.0012813	480.2557110274805	96.204	1.4838	96.204	95.913	97.397	0					59	34	3	0	0	0	0.13504	1	10520	10520		87.696	5.4559	1	1632400			28685	8736	23530	23557	31919	31919					0.01621757452392103
LEEQRLLPM	9	Unmodified	_LEEQRLLPM_					0	0	0			REV__ENSG00000024422|ENST00000263277|EHD2	REV__ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	OvCa9_classI_Rep3	3	564.8074340820312	2	564.807716	1127.60088	-0.90919	-0.00051352	-2.4007	-0.001356	-3.3099	-0.0018695	564.8063205858946	100.34	2.2734	98.734	97.909	100.18	-1.6053					92	44	3	0	0	0	0.22961	1	6809	6809		71.296	9.1883	1	528660	+		28686	16564	23531	23558	31920	31920					0.042183412884014615
LEEREGEP	8	Unmodified	_LEEREGEP_					0	0	0			REV__ENST00000367537.7_2_1:183521209-183521392:+|nuORF	REV__ENST00000367537.7_2_1:183521209-183521392:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	480.29144287109375	2	479.727446	957.44034	1.8397	0.00088254	-2.9489	-0.0014147	-1.1092	-0.00053212	479.7260173518529	111.7	0.59377	110.59	110.35	110.94	-1.1038					16	11	2	0	0	0	0.028476	1	8162	8162		55.504	11.387	1	13402	+		28687	24901	23532	23559	31921	31921					-0.040082901041273544
LEERGIWSQ	9	Unmodified	_LEERGIWSQ_					0	0	0		ENST00000574501.1_1_17:1963911-1964085:-|nuORF	ENST00000574501.1_1_17:1963911-1964085:-|nuORF	ENST00000574501.1_1_17:1963911-1964085:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	559.2877197265625	2	559.285463	1116.55637	1.8335	0.0010255	1.1991	0.00067063	3.0326	0.0016961	559.285935160322	57.961	2.4261	54.834	53.92	56.346	-3.1264					105	62	3	0	0	0	0.56889	1	1739	1739		35.618	2.1027	1	45402			28688	13933	23533	23560	31922	31922					0.002756534665650179
LEERLPTF	8	Unmodified	_LEERLPTF_					0	0	0		L1M1_dup621|chr1:224985612-224987088:+|1.1406864670825911|0.0275683224481481|5.37|427.0|94|3|anti-sense	L1M1_dup621|chr1:224985612-224987088:+|1.1406864670825911|0.0275683224481481|5.37|427.0|94|3|anti-sense	L1M1_dup621|chr1:224985612-224987088:+|1.1406864670825911|0.0275683224481481|5.37|427.0|94|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	502.2261657714844	2	502.7742	1003.53385	1.1502	0.00057829	-2.3799	-0.0011966	-1.2297	-0.00061828	502.77265131278523	88.625	1.43	87.257	86.641	88.071	-1.3676					48	28	2	0	0	0	0.028476	1	7825	7825		25.45	17.219	1	39903			28689	14539	23534	23561	31923	31923					0.03222054068953639
LEERLPTF	8	Unmodified	_LEERLPTF_					0	0	0		L1M1_dup621|chr1:224985612-224987088:+|1.1406864670825911|0.0275683224481481|5.37|427.0|94|3|anti-sense	L1M1_dup621|chr1:224985612-224987088:+|1.1406864670825911|0.0275683224481481|5.37|427.0|94|3|anti-sense	L1M1_dup621|chr1:224985612-224987088:+|1.1406864670825911|0.0275683224481481|5.37|427.0|94|3|anti-sense	MULTI-MATCH	OvCa9_classI_Rep3	3		2	502.7742	1003.53385	-0.85605	-0.0004304	-1.1415	-0.00057391	-1.9975	-0.0010043	502.7733760296954	89.301	1.9061	87.17	86.559	88.465	-2.1309	0.01302	0.00053382	NaN	25.45	67	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67723			28690	14539	23534	23561							0.03222054068953639
LEERPFVI	8	Unmodified	_LEERPFVI_					0	0	0		ENSG00000105464|ENST00000263269|GRIN2D;GRIN2D|p.S691Lfs*18|1|0.08|ENSG00000105464|chr19:48419795-48419795|C/-|frameshift_variant;ENST00000584176.1_1_17:72843434-72846906:-|nuORF;ENSG00000161509|ENST00000293190|GRIN2C	ENSG00000105464|ENST00000263269|GRIN2D;ENST00000584176.1_1_17:72843434-72846906:-|nuORF	ENSG00000105464|ENST00000263269|GRIN2D	MULTI-MSMS	OvCa99_classI_Rep5	1	501.778564453125	2	501.784567	1001.55458	-1.0048	-0.0005042	-4.3059	-0.0021607	-5.3108	-0.0026649	501.78234769362433	36.595	1.3207	36.595	36.164	37.485	0					59	28	4	0	0	0	0.59148	1	1954	1954		65.803	1.5959	1	2717900			28691	2461;6129	23535	23562	31924	31924					0.053866444486288856
LEERPVNK	8	Unmodified	_LEERPVNK_					0	0	0		nc|ENSG00000171634|Q12830|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830-4|BPTF	nc|ENSG00000171634|Q12830|BPTF	nc|ENSG00000171634|Q12830|BPTF	MULTI-MSMS	OvCa99_classI_Rep5	1	492.77862548828125	2	492.777274	983.539994	-0.5474	-0.00026975	0.26056	0.0001284	-0.28684	-0.00014135	492.77723190671105	53.11	0.85892	53.11	52.915	53.774	0					49	19	4	0	0	0	0.64026	1	4200	4200		55.504	2.1528	1	2195100			28692	7221	23536	23563	31925	31925					0.04756572300482276
LEESEPAKN	9	Unmodified	_LEESEPAKN_					0	0	0			REV__nc|ENSG00000171105|P06213-2|INSR;REV__MAP2K2-INSR|1|fusion	REV__nc|ENSG00000171105|P06213-2|INSR	MULTI-MSMS	OvCa99_classI_Rep5	1	508.7479248046875	2	508.748379	1015.4822	2.5055	0.0012747	-2.3331	-0.001187	0.17243	8.7721E-05	508.74700576834215	94.575	1.5231	94.575	94.22	95.743	0					62	35	3	0	0	0	0.091859	1	10292	10292		99.375	8.5983	1	1106200	+		28693	21592;28640	23537	23564	31926	31926					-0.0249173441561652
LEESLNRVL	9	Unmodified	_LEESLNRVL_					0	0	0		tr|A0A553SQM9|A0A553SQM9_NIACIConjugaltransferproteinOS=NialliacirculansOX=1397GN=CEQ21_07930PE=4SV=1	tr|A0A553SQM9|A0A553SQM9_NIACIConjugaltransferproteinOS=NialliacirculansOX=1397GN=CEQ21_07930PE=4SV=1	tr|A0A553SQM9|A0A553SQM9_NIACIConjugaltransferproteinOS=NialliacirculansOX=1397GN=CEQ21_07930PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.7484741210938	2	536.803488	1071.59242	-0.23468	-0.00012598	-0.9362	-0.00050255	-1.1709	-0.00062853	536.8029933730874	35.73	0.55293	35.73	35.566	36.119	0					16	11	2	0	0	0	0.027462	1	1860	1860		11.511	0	1	163350			28694	34182	23538	23565	31927	31927					0.05949110643427957
LEESLSMTQWE	11	Unmodified	_LEESLSMTQWE_					0	0	0		ENSG00000112902|ENST00000382496|SEMA5A	ENSG00000112902|ENST00000382496|SEMA5A	ENSG00000112902|ENST00000382496|SEMA5A	MULTI-SECPEP	OvCa99_classI_Rep5	1	451.75653076171875	3	451.539471	1351.59658	-0.58956	-0.00026621	0.76703	0.00034634	0.17747	8.0135E-05	451.87417172314906	28.016	0.24919	28.016	27.891	28.14	0					7	4	2	0	0	0	0.026364	1	890	890		18.531	0	1	19507			28695	2936	23539	23566	31928	31928					-0.0651521271583988
LEESNIVSLNH	11	Unmodified	_LEESNIVSLNH_					0	0	0			REV__nc|ENSG00000134352|P40189-2|IL6ST	REV__nc|ENSG00000134352|P40189-2|IL6ST	MULTI-SECPEP	OvCa99_classI_Rep5	1	418.5634460449219	3	418.882337	1253.62518	-0.37786	-0.00015828	0.62278	0.00026087	0.24493	0.0001026	418.88253127855575	37.335	0.50724	37.335	37.114	37.621	0					25	10	3	0	0	0	0.025487	1	2040	2040		28.384	0	1	217760	+		28696	19199	23540	23567	31929	31929					0.008512729756375848
LEETHSIFL	9	Unmodified	_LEETHSIFL_					0	0	0		nc|ENSG00000184887|Q96KE9-2|BTBD6;nc|ENSG00000184887|Q96KE9-1|BTBD6;ENSG00000184887|ENST00000392554|BTBD6	nc|ENSG00000184887|Q96KE9-2|BTBD6	nc|ENSG00000184887|Q96KE9-2|BTBD6	MULTI-SECPEP	OvCa9_classI_Rep3	3	544.2999877929688	2	544.784764	1087.55498	-1.4583	-0.00079446	-1.6714	-0.00091057	-3.1297	-0.001705	544.7839960295059	92.686	0.81441	90.724	90.514	91.328	-1.9617					21	16	2	0	0	0	0.027408	1	5904	5904		79.939	14.136	1	70756			28697	8198	23541	23568	31930	31930					0.014700193778253379
LEETQKLL	8	Unmodified	_LEETQKLL_					0	0	0		ENSG00000110318|ENST00000263468|CEP126	ENSG00000110318|ENST00000263468|CEP126	ENSG00000110318|ENST00000263468|CEP126	MULTI-MSMS	OvCa9_classI_Rep2	2	487.281005859375	2	487.281857	972.549162	0.41655	0.00020298	-1.4122	-0.00068813	-0.99564	-0.00048516	487.28120490509764	96.794	4.5464	95.835	95.182	99.728	-0.95857					234	91	6	0	0	0	0.30448	1	8813	8813		106.42	8.9425	1	7137300			28698	2766	23542	23569	31931	31931					0.06178920866148019
LEEVQSLPLP	10	Unmodified	_LEEVQSLPLP_					0	0	0		ENSG00000145912|ENST00000274606|NHP2	ENSG00000145912|ENST00000274606|NHP2	ENSG00000145912|ENST00000274606|NHP2	MULTI-MSMS	OvCa9_classI_Rep2	2	562.8190307617188	2	562.813522	1123.61249	-0.9656	-0.00054345	0.86138	0.0004848	-0.10422	-5.8656E-05	562.813897286719	140.98	1.3862	140.75	140.43	141.82	-0.22696					80	27	4	0	0	0	0.59703	1	14159	14159		42.396	1.618	1	329770			28699	5253	23543	23570	31932	31932					0.055628615833938966
LEEVQTSLAK	10	Unmodified	_LEEVQTSLAK_					0	0	0			REV__ENSG00000165813|ENST00000369287|CCDC186	REV__ENSG00000165813|ENST00000369287|CCDC186	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.3359985351562	2	559.308603	1116.60265	0.13205	7.3858E-05	0.21999	0.00012304	0.35205	0.0001969	559.3093002338532	106.35	0.97898	104.34	103.95	104.93	-2.0161					27	18	3	0	0	0	0.026717	1	9669	9669		106.68	33.804	1	56512	+		28700	21123	23544	23571	31933	31933					0.04901673578001464
LEEVREELL	9	Unmodified	_LEEVREELL_					0	0	0			REV__tr|A0A553SQV9|A0A553SQV9_NIACIRecombinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07395PE=4SV=1	REV__tr|A0A553SQV9|A0A553SQV9_NIACIRecombinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07395PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	565.3069458007812	2	565.308603	1128.60265	0.20207	0.00011423	-1.6397	-0.00092695	-1.4377	-0.00081272	565.3076159501649	96.83	2.3607	95.871	95.481	97.841	-0.95857					161	47	5	0	0	0	0.055627	2	8817	8777;8817		115.49	5.1568	1	3204400	+		28701	30666	23545	23572	31934;31935	31935					0.04349673578008151
LEEWIIWG	8	Unmodified	_LEEWIIWG_					0	0	0			REV__TOP2A|p.D196Gfs*45|1|0.45|ENSG00000131747|chr17:40412961-40412962|-/CCATC|frameshift_variant	REV__TOP2A|p.D196Gfs*45|1|0.45|ENSG00000131747|chr17:40412961-40412962|-/CCATC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8087768554688	2	523.271293	1044.52803	1.2023	0.00062912	-4.1879	-0.0021914	-2.9856	-0.0015623	523.2691140622584	111.08	0.35333	111.08	110.94	111.29	0					11	7	2	0	0	0	0.028476	1	12612	12612		33.516	0	1	95806	+		28702	29518	23546	23573	31936	31936					0.007549555572722966
LEEWNDVL	8	Unmodified	_LEEWNDVL_					0	0	0		ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.2670593261719	2	509.248015	1016.48148	-0.75392	-0.00038393	0.69848	0.0003557	-0.055441	-2.8233E-05	509.2481978580279	49.571	0.39449	49.571	49.373	49.768	0					15	8	2	0	0	0	0.028476	1	3734	3734		51.335	1.8939	1	340110			28703	8305	23547	23574	31937	31937					-0.026105290646682988
LEEYADFF	8	Unmodified	_LEEYADFF_					0	0	0			REV__tr|A0A7D6W1N2|A0A7D6W1N2_9CLOTProlyloligopeptidasefamilyserinepeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03840PE=4SV=1	REV__tr|A0A7D6W1N2|A0A7D6W1N2_9CLOTProlyloligopeptidasefamilyserinepeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03840PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.3236083984375	2	517.22929	1032.44403	-0.37604	-0.0001945	3.1172	0.0016123	2.7411	0.0014178	517.7324274150559	105.49	0.24803	103.47	103.3	103.55	-2.0161					5	4	2	0	0	0	0.028476	1	9584	9584		12.959	2.6939	1	6807.4	+		28704	31887	23548	23575	31938	31938					-0.07089620330293656
LEEYEFLYLFE	11	Unmodified	_LEEYEFLYLFE_					0	0	0		tr|A0A7D7A0Z9|A0A7D7A0Z9_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13350PE=4SV=1	tr|A0A7D7A0Z9|A0A7D7A0Z9_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13350PE=4SV=1	tr|A0A7D7A0Z9|A0A7D7A0Z9_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13350PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.27935791015625	3	498.906148	1493.69661	-0.75346	-0.0003759	3.7362	0.001864	2.9828	0.0014881	498.90769456305503	61.574	0.45213	61.574	61.374	61.826	0					23	10	3	0	0	0	0.025818	1	5471	5471		29.551	13.021	1	480070			28705	36016	23549	23576	31939	31939					-0.030486521103739506
LEEYILNK	8	Unmodified	_LEEYILNK_					0	0	0			REV__ARID4A|p.N712Y|1|0.11|ENSG00000032219|chr14:58364223-58364223|A/T|missense_variant	REV__ARID4A|p.N712Y|1|0.11|ENSG00000032219|chr14:58364223-58364223|A/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	511.2832946777344	2	511.281857	1020.54916	1.8414	0.00094146	0.201	0.00010277	2.0424	0.0010442	511.2817927370661	81.861	1.2928	81.861	81.613	82.906	0					77	30	4	0	0	0	0.36941	1	8473	8473		94.006	14.555	1	5101700	+		28706	15657	23550	23577	31940	31940					0.03970920866152028
LEEYKKEVE	9	Unmodified	_LEEYKKEVE_					0	0	0		nc|ENSG00000075340|P35612-5|ADD2;nc|ENSG00000075340|P35612-6|ADD2;nc|ENSG00000075340|P35612-4|ADD2;nc|ENSG00000075340|P35612-3|ADD2;ENSG00000075340|ENST00000264436|ADD2	nc|ENSG00000075340|P35612-5|ADD2	nc|ENSG00000075340|P35612-5|ADD2	MULTI-MSMS	OvCa99_classI_Rep5	1	584.3015747070312	2	583.800611	1165.58667	-1.0571	-0.00061716	0.329	0.00019207	-0.72814	-0.00042509	583.8008237979673	49.571	3.147	49.571	49.287	52.434	0					143	72	5	0	0	0	0.28934	1	3818	3818		64.207	0	1	37994000			28707	1529	23551	23578	31941	31941					0.010499673411231925
LEFGFYLA	8	Unmodified	_LEFGFYLA_					0	0	0		tr|A0A553SJY2|A0A553SJY2_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_17830PE=4SV=1	tr|A0A553SJY2|A0A553SJY2_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_17830PE=4SV=1	tr|A0A553SJY2|A0A553SJY2_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_17830PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.79766845703125	2	480.247286	958.48002	-0.18159	-8.7209E-05	0.10412	5.0005E-05	-0.077468	-3.7204E-05	480.24722960031886	105.85	0.80697	103.84	103.35	104.16	-2.0161					24	15	2	0	0	0	0.028476	1	9640	9640		21.702	0	1	40549			28708	33552	23552	23579	31942	31942					-0.0008811836277118346
LEFGFYLA	8	Unmodified	_LEFGFYLA_					0	0	0		tr|A0A553SJY2|A0A553SJY2_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_17830PE=4SV=1	tr|A0A553SJY2|A0A553SJY2_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_17830PE=4SV=1	tr|A0A553SJY2|A0A553SJY2_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_17830PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	480.247286	958.48002	-0.86783	-0.00041677	1.4065	0.00067545	0.53864	0.00025868	480.2479255851708	104.16	1.0894	103.58	103.23	104.32	-0.57639	-0.14497	0.0011474	NaN	14.664	35	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15943			28709	33552	23552	23579							-0.0008811836277118346
LEFGFYLA	8	Unmodified	_LEFGFYLA_					0	0	0		tr|A0A553SJY2|A0A553SJY2_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_17830PE=4SV=1	tr|A0A553SJY2|A0A553SJY2_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_17830PE=4SV=1	tr|A0A553SJY2|A0A553SJY2_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_17830PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	480.247286	958.48002	0.66036	0.00031713	-0.785	-0.00037699	-0.12464	-5.9859E-05	480.24667671867866	105.12	0.52174	103.77	103.52	104.04	-1.3482	0.038151	-0.00095745	NaN	14.664	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31627			28710	33552	23552	23579							-0.0008811836277118346
LEFGLVHET	9	Unmodified	_LEFGLVHET_					0	0	0			REV__sp|P16832|GL_HCMVAEnvelopeglycoproteinLOS=Humancytomegalovirus(strainAD169)OX=10360GN=gLPE=1SV=2	REV__sp|P16832|GL_HCMVAEnvelopeglycoproteinLOS=Humancytomegalovirus(strainAD169)OX=10360GN=gLPE=1SV=2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.8174438476562	2	522.771657	1043.52876	-0.2967	-0.00015511	-0.066839	-3.4942E-05	-0.36354	-0.00019005	522.7720383247456	116.03	0.49545	114.66	114.5	114.99	-1.3645					12	9	2	0	0	0	0.027462	1	10814	10814		5.9211	0	1	12300	+		28711	29397	23553	23580	31943	31943					0.008737502063468128
LEFGNRVI	8	Unmodified	_LEFGNRVI_					0	0	0			REV__tr|A0A553SRA9|A0A553SRA9_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_00720PE=3SV=1	REV__tr|A0A553SRA9|A0A553SRA9_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_00720PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.2696838378906	2	474.269084	946.523616	-1.4851	-0.00070433	1.2857	0.00060976	-0.19939	-9.4566E-05	474.2696437691795	88.46	1.1559	85.857	85.327	86.483	-2.6027					40	22	2	0	0	0	0.50674	1	7558	7558		76.847	2.8719	1	183220	+		28712	30713	23554	23581	31944	31944					0.048214911343848144
LEFKAEKKL	9	Unmodified	_LEFKAEKKL_					0	0	0			REV__nc|ENSG00000157654|Q9Y2D5-7|PALM2AKAP2	REV__nc|ENSG00000157654|Q9Y2D5-7|PALM2AKAP2	MULTI-MSMS	OvCa9_classI_Rep3	3	553.33154296875	2	553.334424	1104.6543	-5.4992	-0.0030429	1.7092	0.00094578	-3.7899	-0.0020971	553.3351787520976	152.55	1.4112	151.58	151.19	152.61	-0.97301					72	28	4	0	0	0	0.69895	1	13035	13035		18.324	0	1	153020	+		28713	28948	23555	23582	31945	31945					0.10615462062582992
LEFKAEKKL	9	Unmodified	_LEFKAEKKL_					0	0	0			REV__nc|ENSG00000157654|Q9Y2D5-7|PALM2AKAP2	REV__nc|ENSG00000157654|Q9Y2D5-7|PALM2AKAP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.3319091796875	2	553.334424	1104.6543	-3.6376	-0.0020128	-0.28672	-0.00015865	-3.9243	-0.0021714	553.3340858441829	153.01	1.0617	151.57	151.24	152.3	-1.435					63	25	4	0	0	0	0.70685	1	15169	15169		15.642	0	1	106460	+		28714	28948	23555	23582	31946	31946					0.10615462062582992
LEFKPLLL	8	Unmodified	_LEFKPLLL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa9_classI_Rep2	2	486.81005859375	2	486.810054	971.605554	1.2422	0.00060471	-1.0668	-0.00051931	0.17542	8.5394E-05	486.80935668338475	129.16	1.5814	128.93	128.62	130.21	-0.22696					73	31	4	0	0	0	0.50747	4	12676	12671;12676;12682;12695		76.774	10.976	1	189380			28715	4906	23556	23583	31947;31948;31949;31950	31948					0.11861593493483724
LEFKPLLL	8	Unmodified	_LEFKPLLL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa9_classI_Rep3	3	486.8092041015625	2	486.810054	971.605554	-0.096422	-4.6939E-05	0.11474	5.5858E-05	0.018322	8.9192E-06	486.80997360124303	130.23	1.3225	129.12	128.88	130.21	-1.1121					55	26	3	0	0	0	0.61436	5	10324	10324;10336;10351;10364;10375		60.972	15.961	1	142420			28716	4906	23556	23583	31951;31952;31953;31954;31955	31951					0.11861593493483724
LEFKPLLL	8	Unmodified	_LEFKPLLL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.80975341796875	2	486.810054	971.605554	2.9731	0.0014473	-3.1013	-0.0015098	-0.12826	-6.2438E-05	486.80837264323793	130.6	1.3349	129.12	128.81	130.14	-1.478					69	27	4	0	0	0	0.36941	4	12538	12516;12538;12551;12582		94.006	15.193	1	239820			28717	4906	23556	23583	31956;31957;31958;31959	31957					0.11861593493483724
LEFPKVGGAF	10	Unmodified	_LEFPKVGGAF_					0	0	0			REV__nc|ENSG00000196663|O15040-2|TECPR2	REV__nc|ENSG00000196663|O15040-2|TECPR2	MULTI-MSMS	OvCa99_classI_Rep5	1	532.7916870117188	2	532.792392	1063.57023	1.0864	0.00057882	-2.6587	-0.0014166	-1.5723	-0.00083773	532.7910217995403	155.89	1.117	155.89	155.58	156.7	0					42	21	2	0	0	0	0.48198	1	18262	18262		56.721	12.604	1	53609	+		28718	22853	23557	23584	31960	31960					0.04098930965665204
LEFPLLALV	9	Unmodified	_LEFPLLALV_					0	0	0		tr|A0A553SGS4|A0A553SGS4_NIACItRNAN6-adenosinethreonylcarbamoyltransferaseOS=NialliacirculansOX=1397GN=tsaDPE=3SV=1	tr|A0A553SGS4|A0A553SGS4_NIACItRNAN6-adenosinethreonylcarbamoyltransferaseOS=NialliacirculansOX=1397GN=tsaDPE=3SV=1	tr|A0A553SGS4|A0A553SGS4_NIACItRNAN6-adenosinethreonylcarbamoyltransferaseOS=NialliacirculansOX=1397GN=tsaDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	507.8125	2	507.815336	1013.61612	-5.2506	-0.0026663	1.1828	0.00060065	-4.0678	-0.0020657	507.8157920918579	151.79	1.2085	150.83	150.5	151.71	-0.95647					49	23	3	0	0	0	0.52083	1	12951	12951		40.573	1.7665	1	103240			28719	33188	23558	23585	31961	31961					0.10985576147891152
LEFQHQVE	8	Unmodified	_LEFQHQVE_					0	0	0		ENSG00000275835|ENST00000615383|TUBGCP5;nc|ENSG00000275835|Q96RT8-2|TUBGCP5	ENSG00000275835|ENST00000615383|TUBGCP5	ENSG00000275835|ENST00000615383|TUBGCP5	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.8135375976562	2	515.253631	1028.49271	-1.6194	-0.00083441	3.138	0.0016169	1.5186	0.00078246	515.2550884288172	103.69	0.5099	103.69	103.47	103.98	0					18	11	2	0	0	0	0.028476	1	11576	11576		34.173	0	1	281540			28720	9575	23559	23586	31962	31962					-0.02039706970504085
LEFRCGKKMV	10	Unmodified	_LEFRCGKKMV_					0	0	0		ENST00000581967.1_1_17:8136173-8137964:-|nuORF	ENST00000581967.1_1_17:8136173-8137964:-|nuORF	ENST00000581967.1_1_17:8136173-8137964:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	606.2667846679688	2	605.825386	1209.63622	1.0566	0.00064013	-2.2367	-0.001355	-1.18	-0.0007149	606.3261634927226	158.02	0.33661	158.02	157.85	158.19	0					8	6	2	0	0	0	0.027021	1	18511	18511		10.265	0.5596	1	18187			28721	14000	23560	23587	31963	31963					0.03978680544537383
LEGAGSPATL	10	Unmodified	_LEGAGSPATL_					0	0	0		ENST00000314393.5_1_8:123985527-123985677:+|nuORF	ENST00000314393.5_1_8:123985527-123985677:+|nuORF	ENST00000314393.5_1_8:123985527-123985677:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.7691650390625	2	458.242732	914.470912	1.4711	0.00067413	1.7564	0.00080484	3.2275	0.001479	458.24348303730795	80.893	0.7146	80.893	80.615	81.329	0					20	16	2	0	0	0	0.026635	1	8305	8305		47.657	9.8458	1	227930			28722	10324	23561	23588	31964	31964					0.010254882809135779
LEGDDPSLRK	10	Unmodified	_LEGDDPSLRK_					0	0	0		ENSG00000146005|ENST00000274710|PSD2	ENSG00000146005|ENST00000274710|PSD2	ENSG00000146005|ENST00000274710|PSD2	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.2960205078125	2	565.296027	1128.5775	1.2652	0.0007152	-1.6596	-0.00093819	-0.39445	-0.00022298	565.2949666828802	61.05	1.2052	57.62	57.345	58.55	-3.43					61	24	3	0	0	0	0.40664	1	4160	4160		67.494	8.7117	1	794190			28723	5259	23562	23589	31965	31965					0.01835618775430703
LEGDDPSLRK	10	Unmodified	_LEGDDPSLRK_					0	0	0		ENSG00000146005|ENST00000274710|PSD2	ENSG00000146005|ENST00000274710|PSD2	ENSG00000146005|ENST00000274710|PSD2	MULTI-MATCH	OvCa99_classI_Rep5	1		2	565.296027	1128.5775	0.42859	0.00024228	4.0958	0.0023153	4.5244	0.0025576	565.2977117762991	57.331	0.30212	57.331	57.093	57.396	0	-0.19548	0.0052559	NaN	67.494	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119330			28724	5259	23562	23589							0.01835618775430703
LEGDDPSLRK	10	Unmodified	_LEGDDPSLRK_					0	0	0		ENSG00000146005|ENST00000274710|PSD2	ENSG00000146005|ENST00000274710|PSD2	ENSG00000146005|ENST00000274710|PSD2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	565.296027	1128.5775	-0.72528	-0.00041	0.87547	0.0004949	0.1502	8.4905E-05	565.2963969349846	60.399	1.1635	57.629	57.133	58.297	-2.7702	0.10236	0.001615	NaN	67.494	49	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198090			28725	5259	23562	23589							0.01835618775430703
LEGDHYVL	8	Unmodified	_LEGDHYVL_					0	0	0		tr|A0A7D6W3H3|A0A7D6W3H3_9CLOTAcyl-CoAdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09780PE=3SV=1	tr|A0A7D6W3H3|A0A7D6W3H3_9CLOTAcyl-CoAdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09780PE=3SV=1	tr|A0A7D6W3H3|A0A7D6W3H3_9CLOTAcyl-CoAdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09780PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	473.28411865234375	2	473.23745	944.460347	1.5794	0.00074745	-0.46296	-0.00021909	1.1165	0.00052835	473.23717998772463	88.335	1.0301	86.968	86.153	87.183	-1.3676					25	20	2	0	0	0	0.028476	1	7717	7717		44.531	20.328	1	10968			28726	35452	23563	23590	31966	31966					-0.014104943735219422
LEGDHYVL	8	Unmodified	_LEGDHYVL_					0	0	0		tr|A0A7D6W3H3|A0A7D6W3H3_9CLOTAcyl-CoAdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09780PE=3SV=1	tr|A0A7D6W3H3|A0A7D6W3H3_9CLOTAcyl-CoAdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09780PE=3SV=1	tr|A0A7D6W3H3|A0A7D6W3H3_9CLOTAcyl-CoAdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09780PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	473.23745	944.460347	0.26319	0.00012455	0.34041	0.0001611	0.6036	0.00028565	473.2376585511437	88.847	1.2262	86.716	86.061	87.287	-2.1309	-0.12579	0.00036845	NaN	54.765	31	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25296			28727	35452	23563	23590							-0.014104943735219422
LEGEEPIDI	9	Unmodified	_LEGEEPIDI_					0	0	0		ENSG00000015676|ENST00000355451|NUDCD3;ENST00000338427.10_1_7:44425612-44442312:-|nuORF	ENSG00000015676|ENST00000355451|NUDCD3	ENSG00000015676|ENST00000355451|NUDCD3	MULTI-MSMS	OvCa99_classI_Rep5	1	507.7547607421875	2	507.75313	1013.49171	2.5904	0.0013153	-0.67618	-0.00034333	1.9142	0.00097196	507.7526526588141	100.67	1.5421	100.67	100.28	101.82	0					88	36	4	0	0	0	0.14998	2	11148	11148;11177		84.916	13.62	1	13015000			28728	1006	23564	23591	31967;31968	31967					-0.014499661300874322
LEGELIHDLL	10	Unmodified	_LEGELIHDLL_					0	0	0		ENSG00000149100|ENST00000531120|EIF3M;nc|ENSG00000149100|Q7L2H7-2|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	MULTI-MSMS	OvCa99_classI_Rep5	1	576.321533203125	2	576.318971	1150.62339	1.458	0.0008403	0.40263	0.00023204	1.8607	0.0010723	576.3191880495826	125.33	0.64345	125.33	125.02	125.67	0					30	16	3	0	0	0	0.12609	1	14481	14481		107.01	16.231	1	477130			28729	5441	23565	23592	31969	31969					0.05410263957674033
LEGELIHDLL	10	Unmodified	_LEGELIHDLL_					0	0	0		ENSG00000149100|ENST00000531120|EIF3M;nc|ENSG00000149100|Q7L2H7-2|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	MULTI-MATCH	OvCa9_classI_Rep3	3		2	576.318971	1150.62339	0.59763	0.00034443	-1.3179	-0.00075954	-0.72029	-0.00041512	576.3176036868402	126.54	0.63025	125.47	125.28	125.91	-1.0715	0.08326	-0.00184	NaN	107.01	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17481			28730	5441	23565	23592							0.05410263957674033
LEGELIHDLL	10	Unmodified	_LEGELIHDLL_					0	0	0		ENSG00000149100|ENST00000531120|EIF3M;nc|ENSG00000149100|Q7L2H7-2|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	576.318971	1150.62339	-2.2266	-0.0012832	0.54832	0.00031601	-1.6783	-0.00096724	576.319411832767	126.79	0.64476	125.36	125.15	125.8	-1.4285	-0.02481	0.00031114	NaN	107.01	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15264			28731	5441	23565	23592							0.05410263957674033
LEGELIVLK	9	Unmodified	_LEGELIVLK_					0	0	0			REV__ENST00000604975.1_1_9:35685264-35689844:-|nuORF	REV__ENST00000604975.1_1_9:35685264-35689844:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.31512451171875	2	507.3157	1012.61685	-1.2635	-0.00064101	0.79123	0.00040141	-0.4723	-0.0002396	507.31593965363254	118.1	1.9854	116.76	116.42	118.4	-1.3444					95	37	4	0	0	0	0.48324	1	11066	11066		44.117	3.3386	1	576430	+	+	28732	16208	23566	23593	31970	31970					0.1110437079694293
LEGELQEANQN	11	Unmodified	_LEGELQEANQN_					0	0	0		ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	MULTI-SECPEP	OvCa99_classI_Rep5	1	622.8329467773438	2	622.791306	1243.56806	1.7371	0.0010818	2.2671	0.0014119	4.0042	0.0024938	622.7915893529708	108.6	0.17424	108.6	108.5	108.67	0					6	3	2	0	0	0	0.025423	1	12290	12290		25.126	0	1	85387			28733	2513	23567	23594	31971	31971					-0.04398194300756586
LEGGENVRPQ	10	Unmodified	_LEGGENVRPQ_					0	0	0		ENST00000445000.2_1_6:2988718-2988880:+|nuORF	ENST00000445000.2_1_6:2988718-2988880:+|nuORF	ENST00000445000.2_1_6:2988718-2988880:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	549.8299560546875	2	549.780544	1097.54654	-0.77707	-0.00042722	4.119	0.0022645	3.3419	0.0018373	549.782863253788	81.355	3.8695	79.033	77.326	81.196	-2.3226					128	76	3	0	0	0	0.02361	1	4667	4667		132.76	0	1	135000			28734	11968	23568	23595	31972	31972					0.0016646546118863625
LEGGNQTSTF	10	Unmodified	_LEGGNQTSTF_					0	0	0		nc|ENSG00000262085|Q8NH06|OR1P1	nc|ENSG00000262085|Q8NH06|OR1P1	nc|ENSG00000262085|Q8NH06|OR1P1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.2312622070312	2	527.246003	1052.47745	2.1652	0.0011416	0.7123	0.00037556	2.8775	0.0015171	527.2462512168026	100.54	0.44978	100.54	100.28	100.73	0					17	10	2	0	0	0	0.027028	1	11120	11120		31.53	16.665	1	956120			28735	15365	23569	23596	31973	31973					-0.04668618558389426
LEGGQITSEP	10	Unmodified	_LEGGQITSEP_					0	0	0			REV__nc|ENSG00000233295|A6NIJ5|FAM90A20	REV__nc|ENSG00000233295|A6NIJ5|FAM90A20	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.2732543945312	2	515.756204	1029.49785	0.63566	0.00032784	-0.78641	-0.0004056	-0.15076	-7.7754E-05	515.755780774129	101.48	0.29167	101.48	101.27	101.57	0					9	6	2	0	0	0	0.026523	1	11268	11268		62.107	1.9892	1	101180	+		28736	29150	23570	23597	31974	31974					-0.01571447898572842
LEGIWRLVRP	10	Unmodified	_LEGIWRLVRP_					0	0	0			REV__tr|A0A7D7AG41|A0A7D7AG41_9CLOTTransportpermeaseproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07630PE=3SV=1	REV__tr|A0A7D7AG41|A0A7D7AG41_9CLOTTransportpermeaseproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07630PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8685302734375	2	619.87204	1237.72953	-3.8587	-0.0023919	-0.31006	-0.00019219	-4.1687	-0.0025841	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.72319	1	15235	15235		27.882	3.3631	1	492670	+		28737	32721	23571	23598	31975	31975					0.1201706431365892
LEGKLTTRK	9	Unmodified	_LEGKLTTRK_					0	0	0		L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|7|1|sense	L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|7|1|sense	L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|7|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.2764282226562	2	523.321848	1044.62914	-1.3295	-0.00069573	2.0452	0.0010703	0.71571	0.00037455	523.3228239904249	41.169	1.2498	38.197	37.875	39.124	-2.9721					41	23	2	0	0	0	0.027462	1	1831	1831		37.159	6.6555	1	77258			28738	14535	23572	23599	31976	31976					0.10861407259972111
LEGKVISLQ	9	Unmodified	_LEGKVISLQ_					0	0	0		TRIP11|p.N1845Tfs*4|1|0.37|ENSG00000100815|chr14:91974669-91974669|G/-|frameshift_variant;nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11	TRIP11|p.N1845Tfs*4|1|0.37|ENSG00000100815|chr14:91974669-91974669|G/-|frameshift_variant	TRIP11|p.N1845Tfs*4|1|0.37|ENSG00000100815|chr14:91974669-91974669|G/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	493.7970275878906	2	493.797675	985.580796	-0.73808	-0.00036446	0.42036	0.00020757	-0.31772	-0.00015689	493.7976360204997	49.369	0.82697	49.369	48.986	49.813	0					44	18	4	0	0	0	0.35444	1	3672	3672		56.721	0	1	1733900			28739	2108	23573	23600	31977	31977					0.08742913620108084
LEGLGRSHIA	10	Unmodified	_LEGLGRSHIA_					0	0	0		ENST00000490265.5_1_X:13771424-13787224:+|nuORF;nc|ENSG00000046651|O75665-3|OFD1;ENSG00000046651|ENST00000340096|OFD1	ENST00000490265.5_1_X:13771424-13787224:+|nuORF	ENST00000490265.5_1_X:13771424-13787224:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.8348999023438	2	526.795998	1051.57744	-1.3813	-0.00072765	-2.3159	-0.00122	-3.6972	-0.0019477	526.7947676459194	70.743	1.0647	67.268	66.891	67.955	-3.4754					40	21	2	0	0	0	0.027632	1	5399	5399		87.696	0	1	356070			28740	1136	23574	23601	31978	31978					0.05371663566097595
LEGLKGSEII	10	Unmodified	_LEGLKGSEII_					0	0	0			REV__tr|A0A553SSN8|A0A553SSN8_NIACINAD(P)-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_03420PE=4SV=1	REV__tr|A0A553SSN8|A0A553SSN8_NIACINAD(P)-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_03420PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.7843627929688	2	529.808239	1057.60193	-1.1969	-0.00063411	-0.87547	-0.00046383	-2.0723	-0.0010979	529.8076712243487	101.82	1.4541	99.552	98.838	100.29	-2.2665					73	28	5	0	0	0	0.026602	1	9172	9172		47.96	7.9014	1	177360	+		28741	30855	23575	23602	31979	31979					0.07542878928961727
LEGLKVELL	9	Unmodified	_LEGLKVELL_					0	0	0			REV__nc|ENSG00000241468|P56134-4|ATP5MF	REV__nc|ENSG00000241468|P56134-4|ATP5MF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.3143615722656	2	507.3157	1012.61685	-0.93512	-0.0004744	0.56256	0.00028539	-0.37257	-0.00018901	507.31573307245935	104.13	1.2851	103.55	103.28	104.56	-0.57639					52	25	4	0	0	0	0.13326	2	9637	9637;9643		88.177	5.9364	1	258050	+		28742	23447	23576	23603	31980;31981	31980					0.11104370796954299
LEGLKVELL	9	Unmodified	_LEGLKVELL_					0	0	0			REV__nc|ENSG00000241468|P56134-4|ATP5MF	REV__nc|ENSG00000241468|P56134-4|ATP5MF	MULTI-MSMS	OvCa9_classI_Rep3	3	507.3157958984375	2	507.3157	1012.61685	-0.96298	-0.00048854	0.6153	0.00031215	-0.34769	-0.00017639	507.3158623915197	117.79	1.8845	116.76	116.44	118.32	-1.0324					99	37	4	0	0	0	0.22621	1	8855	8855		71.877	2.2498	1	576140	+		28743	23447	23576	23603	31982	31982					0.11104370796954299
LEGLKVELL	9	Unmodified	_LEGLKVELL_					0	0	0			REV__nc|ENSG00000241468|P56134-4|ATP5MF	REV__nc|ENSG00000241468|P56134-4|ATP5MF	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.3153076171875	2	507.3157	1012.61685	-0.45576	-0.00023121	-0.10681	-5.4186E-05	-0.56257	-0.0002854	507.31539890745773	105.64	1.2079	103.63	103.3	104.51	-2.0161					49	23	3	0	0	0	0.084918	1	9598	9598		101.25	5.4375	1	353210	+		28744	23447	23576	23603	31983	31983					0.11104370796954299
LEGLKVELL	9	Unmodified	_LEGLKVELL_					0	0	0			REV__nc|ENSG00000241468|P56134-4|ATP5MF	REV__nc|ENSG00000241468|P56134-4|ATP5MF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	507.3157	1012.61685	-0.93512	-0.0004744	0.56256	0.00028539	-0.37257	-0.00018901	507.31573307245935	104.13	1.2851	103.55	103.28	104.56	-0.57639	-0.047456	0.00054737	NaN	101.25	52	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	258050	+		28745	23447	23576	23603							0.11104370796954299
LEGLKVELL	9	Unmodified	_LEGLKVELL_					0	0	0			REV__nc|ENSG00000241468|P56134-4|ATP5MF	REV__nc|ENSG00000241468|P56134-4|ATP5MF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	507.3157	1012.61685	-0.065204	-3.3079E-05	-0.50641	-0.00025691	-0.57161	-0.00028999	507.3151294902505	104.96	1.4038	103.61	103.26	104.67	-1.3482	0.017673	-0.00053723	NaN	101.25	52	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	355530	+		28746	23447	23576	23603							0.11104370796954299
LEGLLITAR	9	Unmodified	_LEGLLITAR_					0	0	0			REV__ENSG00000164327|ENST00000357387|RICTOR	REV__ENSG00000164327|ENST00000357387|RICTOR	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.27154541015625	2	493.305667	984.596781	-0.78766	-0.00038856	-0.69818	-0.00034442	-1.4858	-0.00073297	493.3052328661329	99.888	1.4864	98.203	97.932	99.419	-1.685					58	29	4	0	0	0	0.027462	1	6830	6830		38.806	17.859	1	205800	+		28747	20977	23577	23604	31984	31984					0.10386619857001733
LEGLWAAPRL	10	Unmodified	_LEGLWAAPRL_					0	0	0		nc|ENSG00000172508|A5YM72-4|CARNS1;ENSG00000172508|ENST00000687366|CARNS1;nc|ENSG00000172508|A5YM72-3|CARNS1;nc|ENSG00000172508|A5YM72|CARNS1	nc|ENSG00000172508|A5YM72-4|CARNS1	nc|ENSG00000172508|A5YM72-4|CARNS1	MULTI-MSMS	OvCa9_classI_Rep3	3	563.3194580078125	2	563.324391	1124.63423	-6.0709	-0.0034199	-3.7207	-0.0020959	-9.7915	-0.0055158	563.322073230946	155.76	0.93549	154.68	154.4	155.34	-1.073					61	26	3	0	0	0	0.66721	1	13397	13397		34.173	0	1	103840			28748	7302	23578	23605	31985	31985					0.0768971112258896
LEGPAGLLPE	10	Unmodified	_LEGPAGLLPE_					0	0	0			REV__ENSG00000170689|ENST00000311177|HOXB9	REV__ENSG00000170689|ENST00000311177|HOXB9	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.333740234375	2	498.274032	994.533512	0.04037	2.0115E-05	-3.8972	-0.0019419	-3.8568	-0.0019217	498.2720579362259	123.6	0.19642	123.37	123.29	123.48	-0.23193					5	3	2	0	0	0	0.027422	1	11998	11998		71.877	16.373	1	6274.1	+		28749	21557	23579	23606	31986	31986					0.03602634349101663
LEGQAREAI	9	Unmodified	_LEGQAREAI_					0	0	0			REV__ENST00000488316.1_1_20:62290755-62293122:+|nuORF	REV__ENST00000488316.1_1_20:62290755-62293122:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	493.7659606933594	2	493.766906	985.519259	0.035446	1.7502E-05	-0.50839	-0.00025103	-0.47295	-0.00023353	493.76662126445797	67.226	1.1895	64.565	63.95	65.139	-2.661					65	23	4	0	0	0	0.22621	1	5247	5247		71.877	0	1	1407400	+		28750	23550	23580	23607	31987	31987					0.025919819208070294
LEGQDGPPD	9	Unmodified	_LEGQDGPPD_					0	0	0			REV__chr7:101223842-101224038|87|89.47|0.25|8.47|+|0|ZNHIT1,None|1	REV__chr7:101223842-101224038|87|89.47|0.25|8.47|+|0|ZNHIT1,None|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.2841796875	2	464.206347	926.39814	-0.52109	-0.00024189	-0.64326	-0.00029861	-1.1643	-0.0005405	464.20547250290326	94.633	0.29287	93.534	93.411	93.703	-1.0995					10	5	2	0	0	0	0.027459	1	8493	8493		36.447	11.928	1	6972.7	+		28751	16086	23581	23608	31988	31988					-0.0680026551251558
LEGQHEKS	8	Unmodified	_LEGQHEKS_					0	0	0			REV__ENSG00000182150|ENST00000653738|ERCC6L2	REV__ENSG00000182150|ENST00000653738|ERCC6L2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.79290771484375	2	464.230156	926.445759	-0.7154	-0.00033211	0.70058	0.00032523	-0.014819	-6.8795E-06	464.2303531781853	55.902	0.80902	52.607	52.412	53.221	-3.2944					24	15	2	0	0	0	0.028476	1	3531	3531		14.865	0	1	48455	+		28752	22264	23582	23609	31989	31989					-0.02040566521668552
LEGRALLPKI	10	Unmodified	_LEGRALLPKI_					0	0	0			REV__tr|A0A7D7A537|A0A7D7A537_9CLOTChaperoneproteinClpBOS=ClostridiumintestinaleOX=36845GN=clpBPE=3SV=1	REV__tr|A0A7D7A537|A0A7D7A537_9CLOTChaperoneproteinClpBOS=ClostridiumintestinaleOX=36845GN=clpBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.7954711914062	2	555.355691	1108.69683	0.75698	0.00042039	-1.1423	-0.0006344	-0.38536	-0.00021401	555.3550138676909	115.32	0.94114	113.92	113.67	114.61	-1.3977					39	18	3	0	0	0	0.027028	1	10768	10768		24.519	4.5224	1	77597	+		28753	32625	23583	23610	31990	31990					0.14682857190791765
LEGRALLPKI	10	Unmodified	_LEGRALLPKI_					0	0	0			REV__tr|A0A7D7A537|A0A7D7A537_9CLOTChaperoneproteinClpBOS=ClostridiumintestinaleOX=36845GN=clpBPE=3SV=1	REV__tr|A0A7D7A537|A0A7D7A537_9CLOTChaperoneproteinClpBOS=ClostridiumintestinaleOX=36845GN=clpBPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	555.355691	1108.69683	0.86679	0.00048138	-1.3779	-0.00076522	-0.51111	-0.00028385	555.3548698034604	113.95	0.83844	113.84	113.61	114.45	-0.11777	-0.048806	-0.00055752	NaN	24.519	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57254	+		28754	32625	23583	23610							0.14682857190791765
LEGRALLPKI	10	Unmodified	_LEGRALLPKI_					0	0	0			REV__tr|A0A7D7A537|A0A7D7A537_9CLOTChaperoneproteinClpBOS=ClostridiumintestinaleOX=36845GN=clpBPE=3SV=1	REV__tr|A0A7D7A537|A0A7D7A537_9CLOTChaperoneproteinClpBOS=ClostridiumintestinaleOX=36845GN=clpBPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	555.355691	1108.69683	-0.65736	-0.00036507	0.28405	0.00015775	-0.37331	-0.00020732	555.3558277679962	114.95	0.88821	113.9	113.65	114.54	-1.055	0.013972	0.0012884	NaN	24.519	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66314	+		28755	32625	23583	23610							0.14682857190791765
LEGRDRPKN	9	Unmodified	_LEGRDRPKN_					0	0	0			REV__ENST00000368908.9_1_1:151138065-151138233:-|nuORF	REV__ENST00000368908.9_1_1:151138065-151138233:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	542.7974853515625	2	542.796529	1083.5785	0.8602	0.00046691	2.7687	0.0015028	3.6289	0.0019697	542.7978567793076	153.16	2.0687	153.16	152.45	154.52	0					102	45	3	0	0	0	0.50149	1	17941	17941		42.396	1.618	1	105310	+		28756	24929	23584	23611	31991	31991					0.04005877934991986
LEGRIWLK	8	Unmodified	_LEGRIWLK_					0	0	0		ENST00000539289.5_1_12:10366177-10366713:+|nuORF	ENST00000539289.5_1_12:10366177-10366713:+|nuORF	ENST00000539289.5_1_12:10366177-10366713:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.8098449707031	2	507.808377	1013.6022	-0.40484	-0.00020558	3.7312	0.0018947	3.3264	0.0016892	507.8101556003436	21.786	0.85966	20.447	20.22	21.079	-1.3386					26	16	2	0	0	0	0.73626	1	213	213		33.516	1.5607	1	49098			28757	13434	23585	23612	31992	31992					0.09594343439459863
LEGRQMLAR	9	Unmodified	_LEGRQMLAR_					0	0	0		ENST00000542210.1_1_12:123594968-123634504:-|nuORF	ENST00000542210.1_1_12:123594968-123634504:-|nuORF	ENST00000542210.1_1_12:123594968-123634504:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.3067016601562	2	537.29785	1072.58115	0.18567	9.9761E-05	1.0767	0.00057851	1.2624	0.00067828	537.8006917401821	101.68	0.31558	100.16	99.951	100.27	-1.5211					8	5	2	0	0	0	0.027455	1	6956	6956		34.173	0	1	16299			28758	13475	23586	23613	31993	31993					0.04776010068303549
LEGRVAPKTV	10	Unmodified	_LEGRVAPKTV_					0	0	0		ENSG00000186472|ENST00000333891|PCLO;nc|ENSG00000186472|Q9Y6V0-6|PCLO;PCLO|p.D1482Ifs*22|1|0.1|ENSG00000186472|chr7:82956510-82956510|T/-|frameshift_variant;PCLO|p.F2659Vfs*15|1|0.11|ENSG00000186472|chr7:82952978-82952979|-/C|frameshift_variant	ENSG00000186472|ENST00000333891|PCLO	ENSG00000186472|ENST00000333891|PCLO	MULTI-MSMS	OvCa9_classI_Rep2	2	535.3202514648438	2	535.321848	1068.62914	-1.7161	-0.00091867	0.79105	0.00042347	-0.92505	-0.0004952	535.3223243487321	99.775	1.5869	98.945	98.666	100.25	-0.83051					64	31	3	0	0	0	0.49595	1	9109	9109		54.722	1.6334	1	176390			28759	8338	23587	23614	31994	31994					0.09757407259962747
LEGSHTDEAVL	11	Unmodified	_LEGSHTDEAVL_					0	0	0			REV__tr|A0A553SI67|A0A553SI67_NIACIN-acetyltransferasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14305PE=4SV=1	REV__tr|A0A553SI67|A0A553SI67_NIACIN-acetyltransferasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14305PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	585.312744140625	2	585.785492	1169.55643	-1.2621	-0.00073932	-1.4165	-0.00082977	-2.6786	-0.0015691	585.7849747000436	80.154	0.50491	77.814	77.66	78.165	-2.3399					11	9	2	0	0	0	0.025496	1	4411	4411		19.104	0	1	9635.1	+		28760	29865	23588	23615	31995	31995					-0.021563913241152477
LEGSVGMPYLV	11	Unmodified	_LEGSVGMPYLV_					0	0	0			REV__ENSG00000206527|ENST00000383657|HACD2	REV__ENSG00000206527|ENST00000383657|HACD2	MULTI-MSMS	OvCa9_classI_Rep2	2	582.8037109375	2	582.8021	1163.58965	-0.70194	-0.00040909	3.636	0.0021191	2.9341	0.00171	582.8041189340825	74.55	1.0923	72.579	72.167	73.259	-1.9711					69	20	4	0	0	0	0.68684	1	6115	6115		34.173	2.6427	1	410780	+		28761	23239	23589	23616	31996	31996					0.01439519194263994
LEGVLGTLR	9	Unmodified	_LEGVLGTLR_					0	0	0		ENST00000401813.7_1_1:2130482-2130731:-|nuORF	ENST00000401813.7_1_1:2130482-2130731:-|nuORF	ENST00000401813.7_1_1:2130482-2130731:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.27850341796875	2	479.290017	956.565481	-0.33098	-0.00015863	0.26024	0.00012473	-0.07074	-3.3905E-05	479.2897746060867	55.594	0.48647	55.594	55.358	55.845	0					13	11	2	0	0	0	0.027462	1	4537	4537		23.042	0	1	128250			28762	11422	23590	23617	31997	31997					0.08546046822903008
LEGWHCAL	8	Unmodified	_LEGWHCAL_					0	0	0		ENST00000454036.6_2_20:44673649-44676200:+|nuORF	ENST00000454036.6_2_20:44673649-44676200:+|nuORF	ENST00000454036.6_2_20:44673649-44676200:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.2937927246094	2	464.720913	927.427273	1.7886	0.00083118	0.74169	0.00034468	2.5303	0.0011759	464.72115316317377	98.08	0.63895	98.08	97.867	98.506	0					25	14	3	0	0	0	0.028476	1	10850	10850		31.955	18.18	1	316880			28763	12080	23591	23618	31998	31998					-0.03934399697232038
LEGYILKY	8	Unmodified	_LEGYILKY_					0	0	0		tr|A0A7D6W145|A0A7D6W145_9CLOT4-hydroxy-tetrahydrodipicolinatereductaseOS=ClostridiumintestinaleOX=36845GN=dapBPE=3SV=1	tr|A0A7D6W145|A0A7D6W145_9CLOT4-hydroxy-tetrahydrodipicolinatereductaseOS=ClostridiumintestinaleOX=36845GN=dapBPE=3SV=1	tr|A0A7D6W145|A0A7D6W145_9CLOT4-hydroxy-tetrahydrodipicolinatereductaseOS=ClostridiumintestinaleOX=36845GN=dapBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.7800598144531	2	499.781493	997.548434	-5.7767	-0.0028871	0.6814	0.00034055	-5.0953	-0.0025465	499.781991249076	157.6	0.67072	156.05	155.83	156.5	-1.545					22	15	3	0	0	0	0.75241	1	15579	15579		25.45	1.2474	1	34000			28764	35400	23592	23619	31999	31999					0.04956126217109613
LEGYNQLKTEA	11	Unmodified	_LEGYNQLKTEA_					0	0	0			REV__nc|ENSG00000167258|Q9NYV4-2|CDK12	REV__nc|ENSG00000167258|Q9NYV4-2|CDK12	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.31982421875	2	633.322242	1264.62993	0.018717	1.1854E-05	-3.1238	-0.0019783	-3.105	-0.0019665	633.319874027502	21.211	0.87702	19.873	19.646	20.523	-1.3386					35	17	3	0	0	0	0.69808	1	146	146		30.318	2.2362	1	43405	+		28765	21265	23593	23620	32000	32000					0.008201571184144996
LEGYNSLEV	9	Unmodified	_LEGYNSLEV_					0	0	0		ENSG00000189337|ENST00000376030|KAZN	ENSG00000189337|ENST00000376030|KAZN	ENSG00000189337|ENST00000376030|KAZN	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.28411865234375	2	512.253297	1022.49204	1.1303	0.00057903	-2.8039	-0.0014363	-1.6735	-0.00085728	512.7532959005447	90.879	0.20004	90.879	90.738	90.938	0					5	4	2	0	0	0	0.027462	1	9764	9764		16.473	0	1	141140			28766	8550	23594	23621	32001	32001					-0.018305464102354563
LEHCIYKN	8	Unmodified	_LEHCIYKN_					0	0	0			REV__Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|24|1|sense	REV__Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|24|1|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	510.25811767578125	2	510.252577	1018.4906	0.19464	9.9317E-05	2.3473	0.0011977	2.5419	0.001297	510.253743555238	52.691	1.0492	52.691	52.038	53.087	0					40	23	3	0	0	0	0.39692	1	4148	4148		88.643	5.8924	1	1135700	+		28767	28177	23595	23622	32002	32002					-0.017904589799968562
LEHILWPFTRL	11	Unmodified	_LEHILWPFTRL_					0	0	0		ENSG00000118308|ENST00000556887|IRAG2;nc|ENSG00000118308|Q12912|IRAG2	ENSG00000118308|ENST00000556887|IRAG2	ENSG00000118308|ENST00000556887|IRAG2	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.6094055175781	3	475.606478	1423.79761	-0.31997	-0.00015218	3.7336	0.0017757	3.4136	0.0016235	475.6082822814047	81.327	2.6289	78.616	78.297	80.926	-2.7106					180	53	6	0	0	0	0.68391	1	6735	6735		35.178	1.0917	1	5314900			28768	3301	23596	23623	32003	32003					0.10265889173638243
LEHIVALL	8	Unmodified	_LEHIVALL_					0	0	0			REV__ENSG00000197275|ENST00000336148|RAD54B	REV__ENSG00000197275|ENST00000336148|RAD54B	MULTI-SECPEP	OvCa99_classI_Rep5	1	454.24603271484375	2	454.284203	906.553853	0.36792	0.00016714	-0.11413	-5.1846E-05	0.25379	0.00011529	454.2838392163904	62.708	0.27888	62.708	62.581	62.86	0					9	6	2	0	0	0	0.028476	1	5615	5615		44.531	0	1	117310	+		28769	22907	23597	23624	32004	32004					0.0968384979955772
LEHLRGNVL	9	Unmodified	_LEHLRGNVL_					0	0	0			REV__ENSG00000100139|ENST00000215957|MICALL1	REV__ENSG00000100139|ENST00000215957|MICALL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.7922973632812	2	525.806365	1049.59818	-1.0293	-0.00054124	1.8278	0.00096109	0.79848	0.00041985	525.8073623088044	66.145	0.62758	66.145	65.904	66.531	0					24	15	2	0	0	0	0.027462	1	6118	6118		7.6903	0	1	797840	+		28770	17372	23598	23625	32005	32005					0.07536253945750104
LEHSSEISL	9	Unmodified	_LEHSSEISL_					0	0	0		tr|A0A7D6VRG7|A0A7D6VRG7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05460PE=4SV=1	tr|A0A7D6VRG7|A0A7D6VRG7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05460PE=4SV=1	tr|A0A7D6VRG7|A0A7D6VRG7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05460PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7585144042969	2	507.758746	1013.50294	-2.4747	-0.0012565	4.1285	0.0020963	1.6538	0.00083974	507.7606847903374	145.52	1.1407	145.29	144.98	146.12	-0.22696					50	22	3	0	0	0	0.44294	1	14669	14669		47.916	8.6628	1	73594			28771	34929	23599	23626	32006	32006					-0.003271440359412736
LEHSWKALI	9	Unmodified	_LEHSWKALI_					0	0	0		nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF	nc|ENSG00000180764|A2A3N6|PIPSL	nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7772827148438	2	548.811116	1095.60768	1.7721	0.00097256	1.7971	0.00098625	3.5692	0.0019588	549.3137744408102	81.949	1.12	81.949	81.532	82.652	0					34	26	2	0	0	0	0.027462	1	8456	8456		37.159	0	1	1874800			28772	12529	23600	23627	32007	32007					0.0637002223129457
LEHTVGALLQ	10	Unmodified	_LEHTVGALLQ_					0	0	0			REV__tr|A0A553SG76|A0A553SG76_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_10270PE=4SV=1	REV__tr|A0A553SG76|A0A553SG76_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_10270PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.77001953125	2	540.806031	1079.59751	0.23682	0.00012807	-0.54026	-0.00029217	-0.30344	-0.0001641	540.8053983266528	67.319	0.62811	67.319	67.014	67.642	0					26	15	2	0	0	0	0.026994	1	6341	6341		32.812	11.865	1	277080	+		28773	29669	23601	23628	32008	32008					0.060894145060501614
LEHYRRTHCVV	11	Unmodified	_LEHYRRTHCVV_					0	0	0		nc|ENSG00000134571|Q14896-2|MYBPC3;ENSG00000134571|ENST00000545968|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.2669372558594	3	471.578705	1411.71429	0.18954	8.9385E-05	0.67259	0.00031718	0.86213	0.00040656	471.5785569237834	31.604	0.24797	31.604	31.46	31.708	0					7	4	2	0	0	0	0.026277	1	1324	1324		17.833	2.5	1	23557			28774	4309	23602	23629	32009	32009					0.024898294541571886
LEIARQLIP	9	Unmodified	_LEIARQLIP_					0	0	0			REV__ENSG00000130227|ENST00000252512|XPO7	REV__ENSG00000130227|ENST00000252512|XPO7	MULTI-MSMS	OvCa9_classI_Rep2	2	526.8259887695312	2	526.826766	1051.63898	-1.2645	-0.00066616	0.28089	0.00014798	-0.98358	-0.00051818	526.8270166019133	100.56	1.3878	99.727	99.36	100.75	-0.83051					64	27	4	0	0	0	0.44294	1	9235	9235		47.916	0	1	388760	+		28775	18932	23603	23630	32010	32010					0.11522595265387281
LEIDPQKVN	9	Unmodified	_LEIDPQKVN_					0	0	0		ENST00000533597.1_1_11:108016907-108018114:+|nuORF;ENSG00000075239|ENST00000265838|ACAT1	ENST00000533597.1_1_11:108016907-108018114:+|nuORF	ENST00000533597.1_1_11:108016907-108018114:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.2913208007812	2	528.290214	1054.56587	1.4671	0.00077506	-2.5573	-0.001351	-1.0902	-0.00057594	528.2887860998823	136.91	1.0262	135.37	135.08	136.11	-1.5437					37	20	3	0	0	0	0.42676	1	13285	13285		49.442	1.482	1	33606			28776	1527	23604	23631	32011	32011					0.04077421752117516
LEIDPQKVN	9	Unmodified	_LEIDPQKVN_					0	0	0		ENST00000533597.1_1_11:108016907-108018114:+|nuORF;ENSG00000075239|ENST00000265838|ACAT1	ENST00000533597.1_1_11:108016907-108018114:+|nuORF	ENST00000533597.1_1_11:108016907-108018114:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	528.290214	1054.56587	1.5009	0.0007929	-9.6111	-0.0050775	-8.1103	-0.0042846	528.2836105025596	135.38	0.2356	135.38	135.22	135.46	0	0.0085956	-0.0049026	NaN	49.442	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29432			28777	1527	23604	23631							0.04077421752117516
LEIELQSQL	9	Unmodified	_LEIELQSQL_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;CON__P19001;ENST00000468880.1_1_17:39680334-39681232:-|nuORF;ENSG00000171346|ENST00000254043|KRT15;ENST00000471565.2_1_17:39680334-39680852:-|nuORF;CON__P19012;CON__P08730-1;CON__Q9QWL7;nc|ENSG00000171401|P13646-3|KRT13;CON__ENSEMBL:ENSP00000377550;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;CON__Q99456;CON__P02533;CON__A2A4G1;CON__P13646-1;ENSG00000171401|ENST00000246635|KRT13;ENSG00000186847|ENST00000167586|KRT14;ENSG00000187242|ENST00000251643|KRT12;CON__P35527;ENST00000474031.5_1_17:39671722-39674667:-|nuORF;nc|ENSG00000171346|P19012-2|KRT15;ENST00000468313.5_1_17:39657932-39661743:-|nuORF;KRT9|p.E379K|1|0.12|ENSG00000171403|chr17:41568543-41568543|C/T|missense_variant;KRT17|p.A309T|1|0.34|ENSG00000128422|chr17:41621001-41621001|C/T|missense_variant;ENST00000540749.1_1_12:9280913-9281237:+|nuORF;nc|ENSG00000171401|P13646-2|KRT13;CON__Q6IFX2;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENSG00000167916|ENST00000264651|KRT24;CON__Q2M2I5;CON__Q9Z2K1;CON__Q3ZAW8;ENST00000399211.7_1_17:16744211-16749072:-|nuORF	CON__P08727;ENSG00000186832|ENST00000301653|KRT16;ENSG00000167916|ENST00000264651|KRT24;CON__Q9Z2K1;ENST00000399211.7_1_17:16744211-16749072:-|nuORF	CON__P08727	MULTI-MSMS	OvCa99_classI_Rep5	1	536.7991333007812	2	536.797872	1071.58119	1.1779	0.0006323	0.20494	0.00011001	1.3828	0.00074231	536.7979200338933	124.4	1.3124	124.4	124.06	125.37	0					55	29	2	0	0	0	0.094791	1	14355	14355		98.582	8.2122	1	588660		+	28778	625;626;641;11383;651	23605	23632	32012	32012					0.04826288549293167
LEIERPIL	8	Unmodified	_LEIERPIL_					0	0	0		nc|ENSG00000101079|Q9UGV2-3|NDRG3;nc|ENSG00000101079|Q9UGV2-2|NDRG3;ENSG00000101079|ENST00000349004|NDRG3	nc|ENSG00000101079|Q9UGV2-3|NDRG3	nc|ENSG00000101079|Q9UGV2-3|NDRG3	MULTI-MSMS	OvCa9_classI_Rep2	2	491.8006591796875	2	491.800217	981.585882	0.45767	0.00022508	-0.86132	-0.0004236	-0.40365	-0.00019852	491.7997614216502	106.26	3.1068	105.82	105.5	108.61	-0.43642					130	62	3	0	0	0	0.50747	1	9921	9921		76.774	2.5191	1	1827600			28779	2136	23606	23633	32013	32013					0.09435217482700864
LEIHNFAPN	9	Unmodified	_LEIHNFAPN_					0	0	0			REV__ENSG00000256870|ENST00000536262|SLC5A8	REV__ENSG00000256870|ENST00000536262|SLC5A8	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.310302734375	2	527.769448	1053.52434	2.2188	0.001171	-0.24335	-0.00012843	1.9754	0.0010426	527.7689061503818	84.282	0.33736	84.282	84.135	84.472	0					10	7	2	0	0	0	0.027462	1	8815	8815		29.15	0	1	193290	+		28780	23540	23607	23634	32014	32014					-0.00027714216571439465
LEIHSTPGPP	10	Unmodified	_LEIHSTPGPP_					0	0	0		ENSG00000165164|ENST00000378653|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	ENSG00000165164|ENST00000378653|CFAP47	MULTI-MSMS	OvCa9_classI_Rep3	3	524.2778930664062	2	524.277106	1046.53966	1.2201	0.00063968	1.7979	0.0009426	3.018	0.0015823	524.2778574863617	62.52	2.1768	59.486	58.872	61.049	-3.0339					76	45	2	0	0	0	0.69986	1	2322	2322		30.504	2.6214	1	81064			28781	6529	23608	23635	32015	32015					0.018251525806363134
LEIIAVPT	8	Unmodified	_LEIIAVPT_					0	0	0			REV__ENST00000471704.1_1_2:62132813-62228123:+|nuORF	REV__ENST00000471704.1_1_2:62132813-62228123:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	428.26171875	2	428.262936	854.51132	-0.2241	-9.5974E-05	-2.8688	-0.0012286	-3.0929	-0.0013246	428.2616025856162	144.91	1.2947	143.47	143.1	144.39	-1.4357					70	24	4	0	0	0	0.7043	1	14261	14261		42.474	1.9018	1	398580	+		28782	21752	23609	23636	32016	32016					0.0782445467133357
LEIINGFPD	9	Unmodified	_LEIINGFPD_					0	0	0			REV__tr|A0A553SG06|A0A553SG06_NIACIGlyoxalaseOS=NialliacirculansOX=1397GN=CEQ21_09895PE=4SV=1	REV__tr|A0A553SG06|A0A553SG06_NIACIGlyoxalaseOS=NialliacirculansOX=1397GN=CEQ21_09895PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	510.25634765625	2	509.266207	1016.51786	-0.96238	-0.00049011	4.4715	0.0022772	3.5091	0.0017871	509.2683350800039	94.19	1.5696	92.294	91.493	93.063	-1.8956					54	21	3	0	0	0	0.027462	1	6008	6008		37.159	20.686	1	169220	+		28783	29644	23610	23637	32017	32017					0.010263478320553077
LEIITSKT	8	Unmodified	_LEIITSKT_					0	0	0		Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|74|2|sense	Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|74|2|sense	Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|74|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	452.2571716308594	2	452.771126	903.527698	0.058052	2.6284E-05	1.3147	0.00059528	1.3728	0.00062156	452.7715697116496	60.296	0.44272	60.296	60.116	60.559	0					17	10	2	0	0	0	0.028476	1	5246	5246		17.365	0	1	176970			28784	14376	23611	23638	32018	32018					0.07207535837449086
LEIIVQTVM	9	Unmodified	_LEIIVQTVM_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MSMS	OvCa9_classI_Rep4_	4	523.306640625	2	523.301736	1044.58892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.07	1	137.54	137.04	138.04	-1.5284								0	0	0	0.19941	1	13548	13548		26.693	1.1189	1				28785	3959	23612	23639	32019	32019					0.06840724545213561
LEIKFVIDTI	10	Unmodified	_LEIKFVIDTI_					0	0	0			REV__nc|ENSG00000154265|Q8WWZ7-3|ABCA5	REV__nc|ENSG00000154265|Q8WWZ7-3|ABCA5	MULTI-MSMS	OvCa9_classI_Rep4_	4	595.8541259765625	2	595.855189	1189.69583	-2.1329	-0.0012709	-0.98061	-0.0005843	-3.1135	-0.0018552	595.8544938651914	88.211	1.2045	85.608	85.327	86.532	-2.6027					65	23	4	0	0	0	0.70152	1	7522	7522		30.318	1.1477	1	599470	+		28786	20374	23613	23640	32020	32020					0.10856598031227804
LEIKGAKKPGL	11	Unmodified	_LEIKGAKKPGL_					0	0	0		nc|ENSG00000136010|Q3SY69-3|ALDH1L2;ENSG00000136010|ENST00000258494|ALDH1L2	nc|ENSG00000136010|Q3SY69-3|ALDH1L2	nc|ENSG00000136010|Q3SY69-3|ALDH1L2	MULTI-MSMS	OvCa9_classI_Rep2	2	577.3668212890625	2	577.368798	1152.72304	-5.5665	-0.0032139	2.1457	0.0012388	-3.4208	-0.0019751	577.369928690125	160.74	1.397	160.51	160.13	161.53	-0.22696					95	27	5	0	0	0	0.69455	1	16406	16406		31.53	3.6476	1	1195800			28787	4446	23614	23641	32021	32021					0.1527912636227029
LEIKGAKKPGL	11	Unmodified	_LEIKGAKKPGL_					0	0	0		nc|ENSG00000136010|Q3SY69-3|ALDH1L2;ENSG00000136010|ENST00000258494|ALDH1L2	nc|ENSG00000136010|Q3SY69-3|ALDH1L2	nc|ENSG00000136010|Q3SY69-3|ALDH1L2	MULTI-MSMS	OvCa9_classI_Rep4_	4	577.367431640625	2	577.368798	1152.72304	-6.9908	-0.0040363	3.1619	0.0018256	-3.8289	-0.0022107	577.3704843168063	161.9	1.6912	160.28	159.86	161.55	-1.6239					125	44	4	0	0	0	0.68021	1	16050	16050		36.447	0	1	1020600			28788	4446	23614	23641	32022	32022					0.1527912636227029
LEIKKPTST	9	Unmodified	_LEIKKPTST_					0	0	0			REV__nc|ENSG00000155714|Q8IXQ8-2|PDZD9	REV__nc|ENSG00000155714|Q8IXQ8-2|PDZD9	MULTI-SECPEP	OvCa9_classI_Rep2	2	509.7992248535156	2	508.802957	1015.59136	0.89042	0.00045305	-1.6746	-0.00085203	-0.78417	-0.00039899	508.8018851887778	65.662	1.8997	62.966	62.314	64.213	-2.6958					68	37	2	0	0	0	0.027462	1	5089	5089		44.117	20.594	1	285730	+		28789	20435	23615	23642	32023	32023					0.08418896274520193
LEIKSDKLNIS	11	Unmodified	_LEIKSDKLNIS_					0	0	0		tr|A0A7D6VPU8|A0A7D6VPU8_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20450PE=4SV=1	tr|A0A7D6VPU8|A0A7D6VPU8_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20450PE=4SV=1	tr|A0A7D6VPU8|A0A7D6VPU8_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20450PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	420.9272155761719	3	420.578365	1258.71327	1.2584	0.00052926	3.6901	0.001552	4.9485	0.0020812	420.5787526735693	69.956	0.34855	67.237	67.006	67.354	-2.7196					9	6	2	0	0	0	0.025594	1	3132	3132		14.243	2.7886	1	8775.1			28790	34800	23616	23643	32024	32024					0.09425893566253762
LEILGFEED	9	Unmodified	_LEILGFEED_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.2836303710938	2	532.760955	1063.50736	-0.19833	-0.00010566	4.1508	0.0022114	3.9525	0.0021057	532.762948424976	103.45	0.46608	103.45	103.26	103.73	0					17	10	2	0	0	0	0.027455	1	11593	11593		19.997	0	1	316940			28791	1130	23617	23644	32025	32025					-0.02185679613035063
LEILLHLTSLS	11	Unmodified	_LEILLHLTSLS_					0	0	0		ENSG00000237765|ENST00000422728|FAM200B;ENSG00000221909|ENST00000449309|FAM200A	ENSG00000237765|ENST00000422728|FAM200B;ENSG00000221909|ENST00000449309|FAM200A	ENSG00000221909|ENST00000449309|FAM200A	MULTI-MSMS	OvCa9_classI_Rep3	3	619.866455078125	2	619.871371	1237.72819	-2.7857	-0.0017268	-0.3761	-0.00023313	-3.1618	-0.0019599	619.8709153162803	147.4	3.9416	146.45	144.36	148.3	-0.9512					241	78	4	0	0	0	0.71498	1	12319	12319		24.519	7.1542	1	225770			28792	9320;9234	23618	23645	32026	32026					0.11883385434225602
LEIMCAPVR	9	Unmodified	_LEIMCAPVR_					0	0	0		ENSG00000111647|ENST00000279907|BLTP3B;nc|ENSG00000111647|A0JNW5-2|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.3143920898438	2	516.272455	1030.53036	1.698	0.00087664	-0.61192	-0.00031592	1.0861	0.00056072	516.272428467524	77.596	0.54876	77.596	77.252	77.801	0					20	12	3	0	0	0	0.027462	1	7807	7807		35.618	0	1	754900			28793	2836	23619	23646	32027	32027					0.01631344699080728
LEINETLR	8	Unmodified	_LEINETLR_					0	0	0		ENSG00000273136|ENST00000620612|NBPF26;ENSG00000270629|ENST00000619423|NBPF14;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000271383|ENST00000651566|NBPF19	ENSG00000273136|ENST00000620612|NBPF26	ENSG00000273136|ENST00000620612|NBPF26	MULTI-MSMS	OvCa99_classI_Rep5	1	494.2768859863281	2	494.277106	986.53966	-0.59406	-0.00029363	0.24781	0.00012249	-0.34625	-0.00017114	494.27724758368373	39.255	0.52928	39.255	39.017	39.547	0					25	11	3	0	0	0	0.64371	1	2288	2288		54.776	3.4409	1	379750			28794	9555	23620	23647	32028	32028					0.04585152580625618
LEINHEKF	8	Unmodified	_LEINHEKF_					0	0	0			REV__tr|A0A553SR79|A0A553SR79_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_00590PE=3SV=1	REV__tr|A0A553SR79|A0A553SR79_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_00590PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.2732543945312	2	515.271824	1028.5291	0.91393	0.00047092	1.0244	0.00052782	1.9383	0.00099874	515.2721880846603	101.36	0.54317	101.36	101.06	101.61	0					31	12	3	0	0	0	0.53531	1	11268	11268		73.975	5.1879	1	2810300	+		28795	30700	23621	23648	32029	32029					0.015971699261854155
LEINIECLEF	10	Unmodified	_LEINIECLEF_					0	0	0		ENST00000370435.4_1_6:72014589-72014727:+|nuORF	ENST00000370435.4_1_6:72014589-72014727:+|nuORF	ENST00000370435.4_1_6:72014589-72014727:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	611.3722534179688	2	611.804839	1221.59513	1.3922	0.00085174	-1.7394	-0.0010642	-0.34728	-0.00021246	612.305965703352	144.96	0.61617	144.96	144.74	145.36	0					23	12	3	0	0	0	0.026782	1	16961	16961		30.318	0	1	47699			28796	10926	23622	23649	32030	32030					-0.006808020139260407
LEINSKPVL	9	Unmodified	_LEINSKPVL_					0	0	0		ENSG00000107882|ENST00000369902|SUFU;nc|ENSG00000107882|Q9UMX1-2|SUFU;nc|ENSG00000107882|Q9UMX1-3|SUFU	ENSG00000107882|ENST00000369902|SUFU	ENSG00000107882|ENST00000369902|SUFU	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.75262451171875	2	506.8055	1011.59645	2.6981	0.0013674	-0.71072	-0.0003602	1.9874	0.0010072	506.8051123738398	86.528	0.49061	86.528	86.271	86.761	0					21	11	2	0	0	0	0.027154	1	9133	9133		88.177	2.3151	1	553790			28797	2625	23623	23650	32031	32031					0.0911120013714708
LEIPPPFRPR	10	Unmodified	_LEIPPPFRPR_					0	0	0		nc|ENSG00000126583|P05129-2|PRKCG;ENSG00000126583|ENST00000263431|PRKCG	nc|ENSG00000126583|P05129-2|PRKCG	nc|ENSG00000126583|P05129-2|PRKCG	MULTI-MSMS	OvCa9_classI_Rep2	2	611.3546142578125	2	611.358765	1220.70298	-3.7398	-0.0022864	-0.61625	-0.00037675	-4.3561	-0.0026631	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.69073	1	15173	15173		31.53	3.6476	1	331570			28798	3790	23624	23651	32032	32032					0.10145375422325742
LEIQDKEYL	9	Unmodified	_LEIQDKEYL_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF;PI4KA|p.H215Lfs*10|1|0.04|ENSG00000241973|chr22:20819786-20819787|-/A|frameshift_variant	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	OvCa99_classI_Rep5	1	575.805419921875	2	575.803154	1149.59175	2.3114	0.0013309	-0.45359	-0.00026118	1.8579	0.0010698	575.8028956590612	89.144	1.0111	89.144	88.922	89.933	0					33	24	2	0	0	0	0.049969	1	9511	9511		118.74	14.686	1	3226800			28799	9359	23625	23652	32033	32033					0.02294271203709286
LEIREKVLGA	10	Unmodified	_LEIREKVLGA_					0	0	0		KLC3|p.G417Afs*45|1|0.09|ENSG00000104892|chr19:45350527-45350527|A/-|frameshift_variant;nc|ENSG00000104892|Q6P597-2|KLC3;ENSG00000104892|ENST00000391946|KLC3;nc|ENSG00000104892|Q6P597-3|KLC3	KLC3|p.G417Afs*45|1|0.09|ENSG00000104892|chr19:45350527-45350527|A/-|frameshift_variant	KLC3|p.G417Afs*45|1|0.09|ENSG00000104892|chr19:45350527-45350527|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	564.343505859375	2	564.342781	1126.67101	0.082602	4.6616E-05	0.28115	0.00015866	0.36375	0.00020528	564.3428011768873	73.292	0.60375	73.292	73.074	73.678	0					37	14	4	0	0	0	0.36605	1	7182	7182		72.879	1.0018	1	2440300			28800	2404	23626	23653	32034	32034					0.11273962948507688
LEISGVKKV	9	Unmodified	_LEISGVKKV_					0	0	0		tr|A0A553SP30|A0A553SP30_NIACIFlagellarmotorswitchproteinFliGOS=NialliacirculansOX=1397GN=fliGPE=3SV=1	tr|A0A553SP30|A0A553SP30_NIACIFlagellarmotorswitchproteinFliGOS=NialliacirculansOX=1397GN=fliGPE=3SV=1	tr|A0A553SP30|A0A553SP30_NIACIFlagellarmotorswitchproteinFliGOS=NialliacirculansOX=1397GN=fliGPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.80889892578125	2	486.808042	971.601532	-0.096422	-4.6939E-05	4.2465	0.0020672	4.1501	0.0020203	486.80997360124303	130.23	1.3225	129.12	128.88	130.21	-1.1121					55	26	3	0	0	0	0.44568	1	10330	10330		47.657	1.7054	1	142420			28801	33996	23627	23654	32035	32035					0.11459503999765275
LEISQQKGIW	10	Unmodified	_LEISQQKGIW_					0	0	0		ENSG00000047188|ENST00000161863|YTHDC2;ENST00000512600.1_1_5:112919975-112927944:+|nuORF	ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	MULTI-MSMS	OvCa99_classI_Rep5	1	401.2230224609375	3	401.224034	1200.65027	1.0421	0.00041814	-4.2943	-0.001723	-3.2521	-0.0013048	401.222281247938	29.56	0.5982	29.56	29.337	29.935	0					27	11	4	0	0	0	0.54579	1	1060	1060		48.602	6.2635	1	563630			28802	1139	23628	23655	32036	32036					0.057973725688498234
LEISVLNNI	9	Unmodified	_LEISVLNNI_					0	0	0			REV__tr|A0A7D7A290|A0A7D7A290_9CLOTDiscoidindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07485PE=3SV=1	REV__tr|A0A7D7A290|A0A7D7A290_9CLOTDiscoidindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07485PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7864074707031	2	507.795132	1013.57571	-0.29614	-0.00015038	0.41084	0.00020862	0.1147	5.8245E-05	507.79518807609384	73.243	0.5229	73.243	72.877	73.4	0					20	12	2	0	0	0	0.027462	1	7153	7153		30.504	0	1	429710	+		28803	32528	23629	23656	32037	32037					0.06946609757483202
LEITIMMV	8	Unmodified	_LEITIMMV_					0	0	0		ENST00000565246.6_2_16:70263639-70265228:-|nuORF	ENST00000565246.6_2_16:70263639-70265228:-|nuORF	ENST00000565246.6_2_16:70263639-70265228:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	475.2598571777344	2	475.258482	948.502411	-0.32032	-0.00015223	0.8004	0.0003804	0.48009	0.00022817	475.25877165411737	48.436	1.346	48.436	48.116	49.462	0					52	30	3	0	0	0	0.28613	1	3548	3548		109.7	3.2886	1	1840600			28804	13817	23630	23657	32038	32038					0.026100217190105468
LEIVPNGITL	10	Unmodified	_LEIVPNGITL_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000522958.5_1_5:179046175-179048291:-|nuORF;ENST00000469172.5_1_10:70097616-70097877:+|nuORF;nc|ENSG00000096746|P31942-2|HNRNPH3;ENSG00000096746|ENST00000265866|HNRNPH3;ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000469172.5_1_10:70097616-70097877:+|nuORF;ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169045|ENST00000393432|HNRNPH1	MULTI-MSMS	OvCa99_classI_Rep5	1	534.8196411132812	2	534.818607	1067.62266	1.2549	0.00067113	0.98969	0.00052931	2.2446	0.0012004	534.8189922325787	144.51	1.1146	144.51	144.16	145.27	0					53	22	4	0	0	0	0.50873	1	16880	16880		53.089	12.311	1	784270			28805	6970;1951;7039	23631	23658	32039	32039					0.09155469308620923
LEIVPNGITLT	11	Unmodified	_LEIVPNGITLT_					0	0	0		ENST00000469172.5_1_10:70097616-70097877:+|nuORF;nc|ENSG00000096746|P31942-2|HNRNPH3;ENSG00000096746|ENST00000265866|HNRNPH3	ENST00000469172.5_1_10:70097616-70097877:+|nuORF	ENST00000469172.5_1_10:70097616-70097877:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	585.3449096679688	2	585.342446	1168.67034	0.91677	0.00053662	1.5194	0.00088935	2.4361	0.001426	585.3433013941719	138.98	0.82355	138.98	138.78	139.61	0					28	16	3	0	0	0	0.31995	1	16223	16223		66.962	11.458	1	228180			28806	1951	23632	23659	32040	32040					0.09275123508814431
LEIVTVNYFE	10	Unmodified	_LEIVTVNYFE_					0	0	0		ENST00000358372.8_1_6:160176668-160176878:+|nuORF	ENST00000358372.8_1_6:160176668-160176878:+|nuORF	ENST00000358372.8_1_6:160176668-160176878:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	409.5511779785156	3	409.548295	1225.62306	3.0803	0.0012615	3.0445	0.0012469	6.1248	0.0025084	409.54942248250336	83.432	8.3397	83.432	82.437	90.777	0					407	201	4	0	0	0	0.60504	1	8687	8687		41.427	0.64845	1	7486300			28807	10734	23633	23660	32041	32041					0.01926844237800651
LEIVVNTIL	9	Unmodified	_LEIVVNTIL_					0	0	0			REV__ENSG00000164946|ENST00000380880|FREM1	REV__ENSG00000164946|ENST00000380880|FREM1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.3160705566406	2	507.3157	1012.61685	-1.2891	-0.00065398	1.1986	0.00060809	-0.090461	-4.5892E-05	507.3161252150664	116.87	1.585	116.74	116.42	118	-0.12869					86	31	4	0	0	0	0.48047	1	11176	11176		44.377	0	1	305710	+		28808	21042	23634	23661	32042	32042					0.11104370796954299
LEIYEVMQP	9	Unmodified	_LEIYEVMQP_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	OvCa9_classI_Rep2	2	560.7977905273438	2	561.281	1120.54745	-0.66435	-0.00037288	-2.9629	-0.001663	-3.6273	-0.0020359	561.2793222636832	101.01	0.69473	100.24	99.873	100.57	-0.76401					24	13	2	0	0	0	0.027456	1	9261	9261		57.811	0	1	65073	+		28809	23342	23635	23662	32043	32043					-0.008004562141195493
LEIYNKRVRDL	11	Unmodified	_LEIYNKRVRDL_					0	0	0		KIF16B|p.E156K|1|0.49|ENSG00000089177|chr20:16511508-16511508|C/T|missense_variant	KIF16B|p.E156K|1|0.49|ENSG00000089177|chr20:16511508-16511508|C/T|missense_variant	KIF16B|p.E156K|1|0.49|ENSG00000089177|chr20:16511508-16511508|C/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	473.2838134765625	3	473.608659	1417.80415	0.12861	6.0913E-05	4.2322	0.0020044	4.3608	0.0020653	473.6107167167237	86.726	0.77575	85.295	85.015	85.791	-1.4311					20	14	2	0	0	0	0.025908	1	7534	7534		16.53	0	1	21239			28810	14522	23636	23663	32044	32044					0.11195782334357318
LEKAAASPLD	10	Unmodified	_LEKAAASPLD_					0	0	0			REV__nc|ENSG00000121988|Q5FWF4-5|ZRANB3	REV__nc|ENSG00000121988|Q5FWF4-5|ZRANB3	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3099670410156	2	507.776939	1013.53933	-1.1399	-0.00057883	0.80979	0.00041119	-0.33014	-0.00016764	507.7770855187182	63.89	0.80985	63.89	63.607	64.417	0					47	19	4	0	0	0	0.026548	1	5820	5820		54.722	0	1	3031500	+		28811	18571	23637	23664	32045	32045					0.033097328607595955
LEKALKAQN	9	Unmodified	_LEKALKAQN_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;PARP1|p.V490Afs*2|1|0.06|ENSG00000143799|chr1:226379996-226379997|-/G|frameshift_variant	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	OvCa99_classI_Rep5	1	507.802490234375	2	507.800749	1013.58694	-0.086451	-4.39E-05	-0.81425	-0.00041348	-0.9007	-0.00045738	507.80043436316447	60.572	0.75704	60.572	60.314	61.071	0					35	17	3	0	0	0	0.29717	1	5298	5298		63.306	1.1989	1	1372000			28812	5096	23638	23665	32046	32046					0.08069431851617992
LEKALKAQNDL	11	Unmodified	_LEKALKAQNDL_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;PARP1|p.V490Afs*2|1|0.06|ENSG00000143799|chr1:226379996-226379997|-/G|frameshift_variant	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.9062194824219	3	414.906594	1241.69795	1.0957	0.00045463	-3.3033	-0.0013706	-2.2075	-0.00091592	414.9051689011235	35.699	1.347	32.85	32.54	33.887	-2.849					68	26	4	0	0	0	0.69015	1	1184	1184		33.039	2.4705	1	304470			28813	5096	23639	23666	32047	32047					0.08677026769055374
LEKALTTMVT	10	Unmodified	_LEKALTTMVT_					0	0	0		ENSG00000196420|ENST00000368717|S100A5;nc|ENSG00000196420|P33763-2|S100A5	ENSG00000196420|ENST00000368717|S100A5	ENSG00000196420|ENST00000368717|S100A5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.9623413085938	2	553.809925	1105.6053	-0.17552	-9.7204E-05	-2.7697	-0.0015339	-2.9452	-0.0016311	553.8083650247523	82.931	0.38916	80.248	80.028	80.417	-2.6829					17	7	3	0	0	0	0.026849	1	6887	6887		25.574	0	1	42338			28814	8607	23640	23667	32048	32048					0.0567180571129029
LEKAYEKSLLR	11	Unmodified	_LEKAYEKSLLR_					0	0	0			REV__tr|A0A553SJZ9|A0A553SJZ9_NIACIGlutathionehydrolaseproenzymeOS=NialliacirculansOX=1397GN=ggtPE=3SV=1	REV__tr|A0A553SJZ9|A0A553SJZ9_NIACIGlutathionehydrolaseproenzymeOS=NialliacirculansOX=1397GN=ggtPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	450.5983581542969	3	450.59776	1348.77145	-0.36922	-0.00016637	0.94492	0.00042578	0.57569	0.00025941	450.5981883929496	75.04	3.3509	72.629	71.944	75.295	-2.4106					204	65	5	0	0	0	0.66539	1	3813	3813		38.714	2.3964	1	1091400	+		28815	30061	23641	23668	32049	32049					0.11101575211500858
LEKAYYVL	8	Unmodified	_LEKAYYVL_					0	0	0			REV__ENST00000545710.1_1_12:9659830-9660388:-|nuORF	REV__ENST00000545710.1_1_12:9659830-9660388:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.7808532714844	2	499.781493	997.548434	-5.7767	-0.0028871	0.6814	0.00034055	-5.0953	-0.0025465	499.781991249076	157.6	0.67072	156.05	155.83	156.5	-1.545					22	15	3	0	0	0	0.75724	1	15588	15588		23.037	4.7123	1	34000	+		28816	19429	23642	23669	32050	32050					0.04956126217086876
LEKDIQQHIQ	10	Unmodified	_LEKDIQQHIQ_					0	0	0			REV__ENSG00000158106|ENST00000289013|RHPN1	REV__ENSG00000158106|ENST00000289013|RHPN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	417.9065856933594	3	417.894577	1250.6619	-0.6526	-0.00027272	1.5521	0.00064862	0.89951	0.0003759	417.89525091747066	51.472	0.75431	48.298	48.022	48.776	-3.1734					21	14	2	0	0	0	0.027083	1	3032	3032		70.399	0	1	71479	+		28817	20548	23643	23670	32051	32051					0.04659569592195112
LEKDKRIQQKI	11	Unmodified	_LEKDKRIQQKI_					0	0	0		ENSG00000171316|ENST00000423902|CHD7;CHD7|p.S2860Kfs*9|1|0.3|ENSG00000171316|chr8:60865513-60865514|-/A|frameshift_variant;nc|ENSG00000171316|Q9P2D1-2|CHD7	ENSG00000171316|ENST00000423902|CHD7	ENSG00000171316|ENST00000423902|CHD7	MULTI-MSMS	OvCa9_classI_Rep3	3	466.9521484375	3	466.952426	1397.83545	1.5916	0.00074322	-2.0144	-0.00094062	-0.42273	-0.00019739	466.9514863874782	62.714	2.1935	59.681	59.362	61.555	-3.0339					129	43	5	0	0	0	0.65267	1	2289	2289		39.873	1.1591	1	504980			28818	231	23644	23671	32052	32052					0.15244355368463403
LEKDSVTL	8	Unmodified	_LEKDSVTL_					0	0	0		ENST00000476031.1_1_1:161515507-161519517:-|nuORF;ENSG00000203747|ENST00000443193|FCGR3A;ENSG00000162747|ENST00000650385|FCGR3B	ENST00000476031.1_1_1:161515507-161519517:-|nuORF	ENST00000476031.1_1_1:161515507-161519517:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	452.75445556640625	2	452.752933	903.491313	1.4494	0.00065622	-1.6058	-0.00072701	-0.15636	-7.0792E-05	452.7520983077927	68.123	2.4449	64.633	64.333	66.778	-3.4902					124	49	5	0	0	0	0.24597	3	5055	5042;5055;5067		116.9	22.897	1	1541100			28819	8931	23645	23672	32053;32054;32055	32054					0.035706589407254796
LEKEFYREN	9	Unmodified	_LEKEFYREN_					0	0	0		nc|ENSG00000106038|P49640-2|EVX1;ENSG00000106038|ENST00000496902|EVX1;ENSG00000174279|ENST00000308618|EVX2	nc|ENSG00000106038|P49640-2|EVX1	nc|ENSG00000106038|P49640-2|EVX1	MULTI-SECPEP	OvCa99_classI_Rep5	1	614.326171875	2	614.303852	1226.59315	2.7512	0.0016901	1.8357	0.0011277	4.5869	0.0028178	614.3050752323785	89.355	0.69499	89.355	89.153	89.848	0					17	9	3	0	0	0	0.027462	1	9576	9576		42.864	13.715	1	571350			28820	2525	23646	23673	32056	32056					-0.011080947075015501
LEKEILFYRKT	11	Unmodified	_LEKEILFYRKT_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.77130126953125	3	480.61341	1438.8184	0.048705	2.3409E-05	4.2514	0.0020433	4.3001	0.0020667	480.615480661098	72.133	1.1493	69.626	69.329	70.478	-2.5071					54	21	4	0	0	0	0.025677	1	5856	5856		44.639	16.996	1	143100			28821	5663	23647	23674	32057	32057					0.11654434762635901
LEKELRKN	8	Unmodified	_LEKELRKN_					0	0	0			REV__nc|ENSG00000111879|Q8NB25-3|FAM184A	REV__nc|ENSG00000111879|Q8NB25-3|FAM184A	MULTI-MSMS	OvCa99_classI_Rep5	1	515.3096923828125	2	515.306198	1028.59784	1.6691	0.00086009	4.1655	0.0021465	5.8345	0.0030066	515.3082519868889	102.97	0.70849	102.97	102.72	103.43	0					31	16	2	0	0	0	0.3457	1	11491	11491		98.629	9.9865	1	1649400	+		28822	18067	23648	23675	32058	32058					0.08468834225914179
LEKENKELL	9	Unmodified	_LEKENKELL_					0	0	0		ENSG00000132688|ENST00000368223|NES;NES|p.V1249Gfs*6|1|0.06|ENSG00000132688|chr1:156670442-156670443|-/C|frameshift_variant	ENSG00000132688|ENST00000368223|NES	ENSG00000132688|ENST00000368223|NES	MULTI-MSMS	OvCa99_classI_Rep5	1	558.3204956054688	2	558.318971	1114.62339	0.054682	3.053E-05	-0.62182	-0.00034718	-0.56714	-0.00031665	558.3184903165978	48.825	0.83284	48.825	48.412	49.245	0					37	18	3	0	0	0	0.014622	1	3618	3618		154.12	8.9627	1	1172300			28823	4164	23649	23676	32059	32059					0.0706626395767671
LEKERVLRYIL	11	Unmodified	_LEKERVLRYIL_					0	0	0			REV__tr|A0A7D6W1C2|A0A7D6W1C2_9CLOTPutativebeta-lysineN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=ablBPE=4SV=1	REV__tr|A0A7D6W1C2|A0A7D6W1C2_9CLOTPutativebeta-lysineN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=ablBPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.9581604003906	3	477.960921	1430.86093	-5.9329	-0.0028357	2.4838	0.0011872	-3.449	-0.0016485	478.2967649500702	159.34	2.8374	157.75	156.72	159.56	-1.5858					174	71	3	0	0	0	0.72488	1	15733	15733		17.167	0	1	81225	+		28824	31881	23650	23677	32060	32060					0.162738298909062
LEKESRSIK	9	Unmodified	_LEKESRSIK_					0	0	0			REV__EPC2|p.S751Lfs*15|1|0.05|ENSG00000135999|chr2:148784899-148784900|-/GCTGGAGCCAAATATGGTAT|frameshift_variant	REV__EPC2|p.S751Lfs*15|1|0.05|ENSG00000135999|chr2:148784899-148784900|-/GCTGGAGCCAAATATGGTAT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.3163452148438	2	545.316763	1088.61897	-0.51373	-0.00028014	0.45215	0.00024656	-0.061581	-3.3581E-05	545.3169196404446	142.63	4.7541	141.19	139.73	144.49	-1.4427					172	91	2	0	0	0	0.50149	1	13873	13873		42.396	0.96952	1	155190	+		28825	19346	23651	23678	32061	32061					0.07820799534761136
LEKFLSTVQL	10	Unmodified	_LEKFLSTVQL_					0	0	0			REV__nc|ENSG00000123240|Q96CV9-3|OPTN	REV__nc|ENSG00000123240|Q96CV9-3|OPTN	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3427734375	2	589.344989	1176.67542	-5.1334	-0.0030254	1.6192	0.00095427	-3.5142	-0.0020711	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.69928	1	12504	12504		30.569	0.25114	1	589610	+		28826	18632	23652	23679	32062	32062					0.09415427371436635
LEKFPLKTP	9	Unmodified	_LEKFPLKTP_					0	0	0			REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B	REV__nc|ENSG00000139718|Q9UPS6-2|SETD1B	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.8230590820312	2	536.823692	1071.63283	-1.8484	-0.00099229	2.116	0.0011359	0.26757	0.00014364	536.8246347480563	120.45	1.2908	119.1	118.46	119.75	-1.3444					38	23	4	0	0	0	0.40667	1	11339	11339		51.335	0	1	113340	+		28827	19630	23653	23680	32063	32063					0.09988077033858644
LEKFSITRI	9	Unmodified	_LEKFSITRI_					0	0	0			REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	REV__ENST00000484913.5_1_7:92116773-92148321:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8295288085938	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.51865	1	11845	11845		40.778	1.5253	1	308210	+		28828	26553	23654	23681	32064	32064					0.10094577919812764
LEKGHRTFRVR	11	Unmodified	_LEKGHRTFRVR_					0	0	0			REV__ENSG00000181381|ENST00000682922|DDX60L	REV__ENSG00000181381|ENST00000682922|DDX60L	MULTI-SECPEP	OvCa9_classI_Rep2	2	467.25567626953125	3	466.940743	1397.8004	-1.1971	-0.00055898	-0.05026	-2.3469E-05	-1.2474	-0.00058244	466.94067305715555	53.966	1.145	51.152	50.727	51.872	-2.8139					55	22	4	0	0	0	0.026132	1	3667	3667		15.337	1.2515	1	81495	+		28829	22230	23655	23682	32065	32065					0.11741157351161746
LEKGKETLL	9	Unmodified	_LEKGKETLL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	MULTI-MSMS	OvCa9_classI_Rep2	2	515.810302734375	2	515.810782	1029.60701	-0.67933	-0.0003504	0.2906	0.00014989	-0.38873	-0.00020051	515.8107542347046	56.253	1.6846	53.45	53.027	54.712	-2.804					94	33	4	0	0	0	0.075543	4	3960	3954;3960;3964;3970		104.06	10.861	1	455670			28830	9006	23656	23683	32066;32067;32068;32069	32067					0.09339182791586609
LEKGKETLL	9	Unmodified	_LEKGKETLL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.8121337890625	2	515.810782	1029.60701	-0.052257	-2.6955E-05	-0.54172	-0.00027942	-0.59398	-0.00030638	515.8103852527659	56.847	1.6779	53.502	53.171	54.849	-3.3449					96	32	4	0	0	0	0.036986	3	3661	3661;3674;3689		129.42	17.221	1	1285600			28831	9006	23656	23683	32070;32071;32072	32070					0.09339182791586609
LEKGLATSL	9	Unmodified	_LEKGLATSL_					0	0	0		ENSG00000133104|ENST00000438666|SPART;ENST00000495510.1_1_13:36900679-36920374:-|nuORF	ENSG00000133104|ENST00000438666|SPART	ENSG00000133104|ENST00000438666|SPART	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.27752685546875	2	466.276575	930.538597	-0.20892	-9.7417E-05	0.16501	7.6941E-05	-0.043912	-2.0475E-05	466.2765812227024	76.343	1.9139	73.404	72.741	74.655	-2.9389					69	39	3	0	0	0	0.043101	1	6065	6065		124.08	1.9041	1	575170			28832	4198	23657	23684	32073	32073					0.07054938211717854
LEKGSFVGNIV	11	Unmodified	_LEKGSFVGNIV_					0	0	0		ENSG00000253731|ENST00000517434|PCDHGA6;nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6;PCDHGA6|p.P541Sfs*2|1|0.08|ENSG00000253731|chr5:141375704-141375705|CC/-|frameshift_variant	ENSG00000253731|ENST00000517434|PCDHGA6	ENSG00000253731|ENST00000517434|PCDHGA6	MULTI-SECPEP	OvCa9_classI_Rep2	2	582.3616333007812	2	581.826963	1161.63937	-1.0487	-0.00061014	0.82163	0.00047805	-0.22703	-0.00013209	581.8275904456838	116.15	0.64449	116.03	115.79	116.43	-0.11777					18	12	2	0	0	0	0.025457	1	11122	11122		36.447	15.61	1	14501			28833	9438	23658	23685	32074	32074					0.06501970194563
LEKGTTPKEN	10	Unmodified	_LEKGTTPKEN_					0	0	0			REV__ENSG00000147082|ENST00000376042|CCNB3	REV__ENSG00000147082|ENST00000376042|CCNB3	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.8536987304688	2	558.798403	1115.58225	0.85221	0.00047622	-0.96885	-0.00054139	-0.11664	-6.5178E-05	558.7977420437378	114.29	0.68184	114.29	114.01	114.7	0					28	14	3	0	0	0	0.026867	1	13078	13078		35.152	0	1	315400	+		28834	20040	23659	23686	32075	32075					0.029085029181942446
LEKGYLDKV	9	Unmodified	_LEKGYLDKV_					0	0	0		tr|A0A7D6VS50|A0A7D6VS50_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14560PE=4SV=1	tr|A0A7D6VS50|A0A7D6VS50_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14560PE=4SV=1	tr|A0A7D6VS50|A0A7D6VS50_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14560PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.8084106445312	2	532.802957	1063.59136	-0.2961	-0.00015776	-1.3881	-0.00073958	-1.6842	-0.00089734	532.8025841777338	76.206	0.93803	73.835	73.62	74.558	-2.3715					27	17	2	0	0	0	0.024313	1	3989	3989		139.97	7.2126	1	54066			28835	34987	23660	23687	32076	32076					0.062108962745242025
LEKGYLDKV	9	Unmodified	_LEKGYLDKV_					0	0	0		tr|A0A7D6VS50|A0A7D6VS50_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14560PE=4SV=1	tr|A0A7D6VS50|A0A7D6VS50_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14560PE=4SV=1	tr|A0A7D6VS50|A0A7D6VS50_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14560PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	532.802957	1063.59136	-1.6086	-0.00085708	1.8869	0.0010053	0.27828	0.00014827	533.3056921293673	76.043	0.31662	74.19	73.938	74.255	-1.854	0.17727	0.0012272	NaN	139.97	15	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54395			28836	34987	23660	23687							0.062108962745242025
LEKHIRKLAM	10	Unmodified	_LEKHIRKLAM_					0	0	0			REV__ENSG00000131508|ENST00000398733|UBE2D2	REV__ENSG00000131508|ENST00000398733|UBE2D2	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8688354492188	2	619.873725	1237.7329	-3.8587	-0.0023919	-3.029	-0.0018776	-6.8877	-0.0042695	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.69073	1	15328	15328		31.53	6.0796	1	492670	+		28837	19021	23661	23688	32077	32077					0.12353991096006212
LEKHIRKLAM	10	Unmodified	_LEKHIRKLAM_					0	0	0			REV__ENSG00000131508|ENST00000398733|UBE2D2	REV__ENSG00000131508|ENST00000398733|UBE2D2	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8688354492188	2	619.873725	1237.7329	-3.6059	-0.0022352	-3.3723	-0.0020904	-6.9782	-0.0043256	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.69073	1	12923	12923		31.53	1.0262	1	664560	+		28838	19021	23661	23688	32078	32078					0.12353991096006212
LEKHIRKLAM	10	Unmodified	_LEKHIRKLAM_					0	0	0			REV__ENSG00000131508|ENST00000398733|UBE2D2	REV__ENSG00000131508|ENST00000398733|UBE2D2	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8701782226562	2	619.873725	1237.7329	-3.1194	-0.0019336	-3.9204	-0.0024301	-7.0397	-0.0043637	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.6349	2	14862	14826;14862		37.812	2.6595	1	806750	+		28839	19021	23661	23688	32079;32080	32080					0.12353991096006212
LEKHSLRLR	9	Unmodified	_LEKHSLRLR_					0	0	0			REV__SEMA3E|p.Q570Sfs*24|1|0.08|ENSG00000170381|chr7:83387011-83387011|A/-|frameshift_variant	REV__SEMA3E|p.Q570Sfs*24|1|0.08|ENSG00000170381|chr7:83387011-83387011|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	576.355224609375	2	576.354014	1150.69348	-1.6325	-0.0009409	0.36768	0.00021191	-1.2648	-0.00072899	576.3541628827252	73.012	2.7388	69.615	69.301	72.04	-3.3961					157	56	5	0	0	0	0.35444	1	5671	5671		56.721	3.3696	1	5280500	+		28840	21535	23662	23689	32081	32081					0.1241560713679064
LEKIAPHKI	9	Unmodified	_LEKIAPHKI_					0	0	0			REV__tr|A0A553STK3|A0A553STK3_NIACIOrnithineaminotransferaseOS=NialliacirculansOX=1397GN=rocDPE=3SV=1	REV__tr|A0A553STK3|A0A553STK3_NIACIOrnithineaminotransferaseOS=NialliacirculansOX=1397GN=rocDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	524.8269653320312	2	524.829309	1047.64407	-4.3888	-0.0023034	0.2202	0.00011557	-4.1686	-0.0021878	524.8292785030237	156.45	1.4045	156.23	155.89	157.3	-0.22696					98	36	4	0	0	0	0.51865	2	15917	15917;15931		40.778	5.5774	1	556080	+		28841	30977	23663	23690	32082;32083	32082					0.12214899127980061
LEKIAPHKI	9	Unmodified	_LEKIAPHKI_					0	0	0			REV__tr|A0A553STK3|A0A553STK3_NIACIOrnithineaminotransferaseOS=NialliacirculansOX=1397GN=rocDPE=3SV=1	REV__tr|A0A553STK3|A0A553STK3_NIACIOrnithineaminotransferaseOS=NialliacirculansOX=1397GN=rocDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	524.8273315429688	2	524.829309	1047.64407	-6.4209	-0.0033699	2.2692	0.001191	-4.1517	-0.0021789	524.8303693371411	156.49	1.5557	155.32	154.95	156.51	-1.1687					100	33	5	0	0	0	0.42676	3	13462	13450;13462;13497		49.442	15.926	1	1025700	+		28842	30977	23663	23690	32084;32085;32086	32085					0.12214899127980061
LEKIAPHKI	9	Unmodified	_LEKIAPHKI_					0	0	0			REV__tr|A0A553STK3|A0A553STK3_NIACIOrnithineaminotransferaseOS=NialliacirculansOX=1397GN=rocDPE=3SV=1	REV__tr|A0A553STK3|A0A553STK3_NIACIOrnithineaminotransferaseOS=NialliacirculansOX=1397GN=rocDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.8270263671875	2	524.829309	1047.64407	-5.767	-0.0030267	1.6173	0.0008488	-4.1497	-0.0021779	524.8300427930473	156.94	1.6972	155.39	155.01	156.7	-1.545					136	47	6	0	0	0	0.44568	2	15510	15510;15533		47.657	17.154	1	1010500	+		28843	30977	23663	23690	32087;32088	32087					0.12214899127980061
LEKIEKILI	9	Unmodified	_LEKIEKILI_					0	0	0			REV__tr|A0A7D6VM85|A0A7D6VM85_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12630PE=4SV=1	REV__tr|A0A7D6VM85|A0A7D6VM85_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12630PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.8302612304688	2	549.860275	1097.706	2.0604	0.0011329	-1.4079	-0.00077415	0.65248	0.00035877	549.859887753796	80.009	0.40961	80.009	79.783	80.192	0					11	9	2	0	0	0	0.023563	1	8171	8171		180.87	44.601	1	317710	+		28844	31127	23664	23691	32089	32089					0.16105205756480245
LEKIKYDLVFK	11	Unmodified	_LEKIKYDLVFK_					0	0	0			REV__ENSG00000243710|ENST00000372492|CFAP57	REV__ENSG00000243710|ENST00000372492|CFAP57	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.7722473144531	3	465.946389	1394.81734	0.71049	0.00033105	3.269	0.0015232	3.9795	0.0018542	466.2820579630067	37.633	0.84692	34.74	34.442	35.289	-2.8925					24	16	2	0	0	0	0.026068	1	1449	1449		21.78	0.094677	1	98850	+		28845	23467	23665	23692	32090	32090					0.13572220393712087
LEKIQFFLI	9	Unmodified	_LEKIQFFLI_					0	0	0			REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|208|2|anti-sense	REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|208|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	575.84228515625	2	575.847167	1149.67978	-2.8608	-0.0016474	-4.0802	-0.0023496	-6.941	-0.0039969	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.55588	1	14642	14642		37.159	0	1	356230	+		28846	16150	23666	23693	32091	32091					0.11092936585009738
LEKISPLSKY	10	Unmodified	_LEKISPLSKY_					0	0	0			REV__tr|A0A553SN84|A0A553SN84_NIACIL-aspartateoxidaseOS=NialliacirculansOX=1397GN=nadBPE=3SV=1	REV__tr|A0A553SN84|A0A553SN84_NIACIL-aspartateoxidaseOS=NialliacirculansOX=1397GN=nadBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3421630859375	2	589.344989	1176.67542	-2.1868	-0.0012888	-1.3084	-0.00077111	-3.4952	-0.0020599	589.3441619466173	148.26	4.549	146.82	145.53	150.08	-1.435					304	95	6	0	0	0	0.6349	2	14636	14636;14736		37.812	1.3648	1	385010	+		28847	30400	23667	23694	32092;32093	32092					0.09415427371436635
LEKKEKRHRRL	11	Unmodified	_LEKKEKRHRRL_					0	0	0			REV__ENSG00000155100|ENST00000404789|OTUD6B	REV__ENSG00000155100|ENST00000404789|OTUD6B	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.31048583984375	3	498.310947	1491.91101	-6.1524	-0.0030658	4.4758	0.0022303	-1.6766	-0.00083549	498.3133054732335	158.89	2.5083	157.31	156.27	158.78	-1.5859					162	69	3	0	0	0	0.72545	1	15709	15709		9.6461	4.2332	1	46050	+		28848	20415	23668	23695	32094	32094					0.18473377339387298
LEKKEKRHRRL	11	Unmodified	_LEKKEKRHRRL_					0	0	0			REV__ENSG00000155100|ENST00000404789|OTUD6B	REV__ENSG00000155100|ENST00000404789|OTUD6B	MULTI-MATCH	OvCa9_classI_Rep3	3		3	498.310947	1491.91101	-6.6637	-0.0033206	5.4633	0.0027224	-1.2004	-0.00059816	498.6477168678567	158.44	0.81821	157.17	156.63	157.45	-1.267	-0.068594	0.0013599	NaN	9.6461	27	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13462	+		28849	20415	23668	23695							0.18473377339387298
LEKKFGIQL	9	Unmodified	_LEKKFGIQL_					0	0	0		nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENSG00000179222|ENST00000326587|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51640434-51640983:+|nuORF	nc|ENSG00000179222|Q9Y5V3-2|MAGED1	nc|ENSG00000179222|Q9Y5V3-2|MAGED1	MULTI-MSMS	OvCa9_classI_Rep2	2	538.3275756835938	2	538.329142	1074.64373	-0.88877	-0.00047845	0.3787	0.00020386	-0.51007	-0.00027458	538.329151646269	83.15	2.4766	81.551	81.167	83.643	-1.5989					116	49	4	0	0	0	0.043101	3	7117	7111;7117;7121		124.08	14.602	1	763280			28850	7811	23669	23696	32095;32096;32097	32096					0.10939479408148145
LEKKFGIQL	9	Unmodified	_LEKKFGIQL_					0	0	0		nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENSG00000179222|ENST00000326587|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51640434-51640983:+|nuORF	nc|ENSG00000179222|Q9Y5V3-2|MAGED1	nc|ENSG00000179222|Q9Y5V3-2|MAGED1	MULTI-MSMS	OvCa9_classI_Rep3	3	538.3295288085938	2	538.329142	1074.64373	-0.07357	-3.9605E-05	-0.57478	-0.00030942	-0.64835	-0.00034902	538.3285886284546	84.118	2.7065	81.857	81.39	84.096	-2.261					127	55	4	0	0	0	0.018335	3	4856	4850;4856;4868		148.99	28.118	1	1124900			28851	7811	23669	23696	32098;32099;32100	32099					0.10939479408148145
LEKKFGIQL	9	Unmodified	_LEKKFGIQL_					0	0	0		nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENSG00000179222|ENST00000326587|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51640434-51640983:+|nuORF	nc|ENSG00000179222|Q9Y5V3-2|MAGED1	nc|ENSG00000179222|Q9Y5V3-2|MAGED1	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.3301391601562	2	538.329142	1074.64373	0.032421	1.7453E-05	-0.57899	-0.00031169	-0.54657	-0.00029424	538.3286452406022	84.37	2.265	81.707	81.412	83.677	-2.6629					106	46	4	0	0	0	0.03923	2	7064	7052;7064		127.46	26.209	1	906360			28852	7811	23669	23696	32101;32102	32102					0.10939479408148145
LEKKIEQEL	9	Unmodified	_LEKKIEQEL_					0	0	0		ENSG00000101421|ENST00000217402|CHMP4B	ENSG00000101421|ENST00000217402|CHMP4B	ENSG00000101421|ENST00000217402|CHMP4B	MULTI-MSMS	OvCa99_classI_Rep5	1	565.3287353515625	2	565.326796	1128.63904	-0.14575	-8.2398E-05	0.66741	0.0003773	0.52165	0.00029491	565.3270314467675	55.355	1.028	55.355	55.107	56.135	0					75	24	5	0	0	0	0.0077394	1	4508	4508		181.41	9.1585	1	3605000			28853	2174	23670	23697	32103	32103					0.07986550474720389
LEKKKSSSIAS	11	Unmodified	_LEKKKSSSIAS_					0	0	0			REV__ENSG00000187240|ENST00000375735|DYNC2H1	REV__ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3428955078125	2	589.342978	1176.6714	-2.1868	-0.0012888	2.1045	0.0012403	-0.082325	-4.8518E-05	589.3441619466173	148.26	4.549	146.82	145.53	150.08	-1.435					304	95	6	0	0	0	0.68757	2	14589	14589;14614		33.922	4.7516	1	385010	+		28854	22636	23671	23698	32104;32105	32104					0.09013337877718186
LEKKKWLKEKE	11	Unmodified	_LEKKKWLKEKE_					0	0	0			REV__nc|ENSG00000153237|Q8NFR7-2|CCDC148	REV__nc|ENSG00000153237|Q8NFR7-2|CCDC148	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.9587707519531	3	486.96081	1457.8606	-6.3941	-0.0031137	2.4788	0.0012071	-3.9153	-0.0019066	486.96182500070705	161.6	3.2719	159.97	158.36	161.63	-1.6239					171	80	4	0	0	0	0.72555	1	15890	15890		8.4073	1.7476	1	99720	+		28855	20331	23672	23699	32106	32106					0.14998410170983334
LEKKSRIPK	9	Unmodified	_LEKKSRIPK_					0	0	0		tr|A0A7D7A2J7|A0A7D7A2J7_9CLOTMultidrugresistanceeffluxtransporterfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08755PE=4SV=1	tr|A0A7D7A2J7|A0A7D7A2J7_9CLOTMultidrugresistanceeffluxtransporterfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08755PE=4SV=1	tr|A0A7D7A2J7|A0A7D7A2J7_9CLOTMultidrugresistanceeffluxtransporterfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08755PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.830810546875	2	549.853316	1097.69208	2.2391	0.0012312	-2.2043	-0.0012121	0.034772	1.912E-05	549.851913457852	80.301	0.62206	80.301	79.907	80.529	0					27	14	3	0	0	0	0.027301	1	8201	8201		72.879	0	1	948550			28856	36082	23673	23700	32107	32107					0.14713973048037587
LEKKSRIPK	9	Unmodified	_LEKKSRIPK_					0	0	0		tr|A0A7D7A2J7|A0A7D7A2J7_9CLOTMultidrugresistanceeffluxtransporterfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08755PE=4SV=1	tr|A0A7D7A2J7|A0A7D7A2J7_9CLOTMultidrugresistanceeffluxtransporterfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08755PE=4SV=1	tr|A0A7D7A2J7|A0A7D7A2J7_9CLOTMultidrugresistanceeffluxtransporterfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08755PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	549.8299560546875	2	549.853316	1097.69208	-1.4371	-0.0007902	-3.8251	-0.0021032	-5.2622	-0.0028934	549.8512120353977	82.722	0.69184	80.426	80.039	80.731	-2.2963					19	13	2	0	0	0	0.023563	1	4667	4667		163.15	10.518	1	17876			28857	36082	23673	23700	32108	32108					0.14713973048037587
LEKKTWQP	8	Unmodified	_LEKKTWQP_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4|ABCA13	REV__nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.78955078125	2	515.290017	1028.56548	1.8376	0.00094689	1.172	0.00060393	3.0096	0.0015508	515.290523545336	102.23	0.60098	102.23	101.82	102.42	0					32	13	3	0	0	0	0.028476	1	11354	11354		37.159	5.6293	1	815360	+		28858	22143	23674	23701	32109	32109					0.05234046822897653
LEKKVEKV	8	Unmodified	_LEKKVEKV_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF;ENST00000436135.1_1_1:158495166-158495214:+|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	OvCa99_classI_Rep5	1	486.8079833984375	2	486.808042	971.601532	-0.81267	-0.00039561	-0.053919	-2.6248E-05	-0.86659	-0.00042186	486.8081054914388	37.509	1.7356	37.509	36.796	38.531	0					64	37	4	0	0	0	0.55617	1	2059	2059		71.877	3.0906	1	1528300			28859	1643	23675	23702	32110	32110					0.11459503999765275
LEKKVSVAVPK	11	Unmodified	_LEKKVSVAVPK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.P12974Lfs*4|1|0.05|ENSG00000155657|chr2:178631204-178631205|-/GTACA|frameshift_variant;TTN|p.E11597Rfs*5|1|0.5|ENSG00000155657|chr2:178651954-178651954|A/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OvCa9_classI_Rep3	3	599.3801879882812	2	599.381906	1196.74926	-5.1251	-0.0030719	2.9172	0.0017485	-2.2079	-0.0013234	599.3837594263146	163.98	0.39844	162.59	162.3	162.69	-1.3925					19	8	3	0	0	0	0.71191	1	14298	14298		25.574	4.6271	1	1825400			28860	5793;36288	23676	23703	32111	32111					0.15875395533748815
LEKLAKFDTI	10	Unmodified	_LEKLAKFDTI_					0	0	0			REV__tr|A0A553SP64|A0A553SP64_NIACIDihydroorotaseOS=NialliacirculansOX=1397GN=pyrCPE=3SV=1	REV__tr|A0A553SP64|A0A553SP64_NIACIDihydroorotaseOS=NialliacirculansOX=1397GN=pyrCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	589.343017578125	2	589.344989	1176.67542	-5.1334	-0.0030254	1.6192	0.00095427	-3.5142	-0.0020711	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.77834	1	12662	12662		21.686	1.689	1	589610	+		28861	30500	23677	23704	32112	32112					0.09415427371436635
LEKLAKKCV	9	Unmodified	_LEKLAKKCV_					0	0	0			REV__tr|A0A7D6ZUQ2|A0A7D6ZUQ2_9CLOTAlpha-1,4glucanphosphorylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01110PE=3SV=1	REV__tr|A0A7D6ZUQ2|A0A7D6ZUQ2_9CLOTAlpha-1,4glucanphosphorylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01110PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	516.3135986328125	2	516.31772	1030.62089	-4.2539	-0.0021964	-3.1202	-0.001611	-7.3741	-0.0038074	516.3160035152533	156.4	1.1562	156.18	155.89	157.05	-0.22696					77	28	5	0	0	0	0.68424	1	15927	15927		21.96	1.4781	1	397210	+		28862	32226	23678	23705	32113	32113					0.10680137019016911
LEKLAKKCV	9	Unmodified	_LEKLAKKCV_					0	0	0			REV__tr|A0A7D6ZUQ2|A0A7D6ZUQ2_9CLOTAlpha-1,4glucanphosphorylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01110PE=3SV=1	REV__tr|A0A7D6ZUQ2|A0A7D6ZUQ2_9CLOTAlpha-1,4glucanphosphorylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01110PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.31396484375	2	516.31772	1030.62089	-5.454	-0.002816	-1.8366	-0.00094829	-7.2906	-0.0037643	516.3166829666766	156.94	1.6079	155.39	155.01	156.62	-1.545					108	44	5	0	0	0	0.59259	1	15514	15514		32.812	2.3088	1	509660	+		28863	32226	23678	23705	32114	32114					0.10680137019016911
LEKLASMLETL	11	Unmodified	_LEKLASMLETL_					0	0	0		ENSG00000170955|ENST00000303927|CAVIN3	ENSG00000170955|ENST00000303927|CAVIN3	ENSG00000170955|ENST00000303927|CAVIN3	MULTI-MSMS	OvCa99_classI_Rep5	1	624.3513793945312	2	624.349414	1246.68428	1.457	0.0009097	0.41074	0.00025645	1.8678	0.0011661	624.3495537214495	127.12	0.36028	127.12	126.91	127.27	0					13	7	2	0	0	0	0.25759	1	14708	14708		72.243	19.154	1	277540			28864	7157	23679	23706	32115	32115					0.07080032945577841
LEKLEKSKKT	10	Unmodified	_LEKLEKSKKT_					0	0	0		nc|ENSG00000048649|Q96T23-2|RSF1;ENSG00000048649|ENST00000308488|RSF1;nc|ENSG00000048649|Q96T23-3|RSF1	nc|ENSG00000048649|Q96T23-2|RSF1	nc|ENSG00000048649|Q96T23-2|RSF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	603.3010864257812	2	602.368995	1202.72344	0.91456	0.00055091	-1.3549	-0.00081613	-0.4403	-0.00026522	602.3695628483057	60.288	0.64398	56.858	56.65	57.294	-3.43					23	12	3	0	0	0	0.027062	1	4119	4119		32.751	10.171	1	44163			28865	1158	23680	23707	32116	32116					0.1301850129145805
LEKLGEHQLSL	11	Unmodified	_LEKLGEHQLSL_					0	0	0			REV__nc|ENSG00000154760|Q68D06-2|SLFN13	REV__nc|ENSG00000154760|Q68D06-2|SLFN13	MULTI-SECPEP	OvCa99_classI_Rep5	1	633.3614501953125	2	633.856252	1265.69795	1.5331	0.00097179	3.0949	0.0019617	4.6281	0.0029335	633.8585923198203	131.2	0.52026	131.2	131.01	131.53	0					16	10	2	0	0	0	0.025726	1	15244	15244		27.047	22.142	1	291400	+		28866	20396	23681	23708	32117	32117					0.07573026769068747
LEKLGGKKEP	10	Unmodified	_LEKLGGKKEP_					0	0	0			REV__ENSG00000187079|ENST00000527636|TEAD1	REV__ENSG00000187079|ENST00000527636|TEAD1	MULTI-MSMS	OvCa9_classI_Rep2	2	549.8297729492188	2	549.829506	1097.64446	0.80067	0.00044023	-1.6255	-0.00089376	-0.82486	-0.00045353	549.8286388284898	82.164	4.5681	80.515	79.767	84.335	-1.6485					186	90	5	0	0	0	0.015566	1	7017	7017		153.04	4.9929	1	3206100	+		28867	16439	23682	23709	32118	32118					0.09954274057213297
LEKLGVTV	8	Unmodified	_LEKLGVTV_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	OvCa9_classI_Rep4_	4	429.7691650390625	2	429.768386	857.522219	-0.087412	-3.7567E-05	0.094535	4.0628E-05	0.0071228	3.0611E-06	429.7682538110629	81.723	1.406	79.04	78.767	80.173	-2.6829					55	28	3	0	0	0	0.47824	1	6724	6724		79.713	2.9384	1	341820			28868	4652	23683	23710	32119	32119					0.08775857045611701
LEKLGVTV	8	Unmodified	_LEKLGVTV_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	429.768386	857.522219	-0.0080162	-3.4451E-06	0.084473	3.6304E-05	0.076457	3.2859E-05	429.7682577114361	80.969	1.6732	79.321	78.765	80.438	-1.6485	0.20652	4.0556E-05	NaN	79.713	68	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161060			28869	4652	23683	23710							0.08775857045611701
LEKLGVTV	8	Unmodified	_LEKLGVTV_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	429.768386	857.522219	0.058838	2.5287E-05	-0.067442	-2.8984E-05	-0.0086033	-3.6974E-06	429.768187753184	81.305	1.7095	78.982	78.645	80.355	-2.3226	-0.13246	-9.002E-05	NaN	79.713	69	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	379990			28870	4652	23683	23710							0.08775857045611701
LEKLIYIRE	9	Unmodified	_LEKLIYIRE_					0	0	0			REV__ENST00000377861.4_3_13:67783303-67783480:-|nuORF	REV__ENST00000377861.4_3_13:67783303-67783480:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	588.8140869140625	2	588.852981	1175.69141	-0.037696	-2.2197E-05	-0.061868	-3.6431E-05	-0.099564	-5.8628E-05	588.8528129285979	56.541	1.6257	53.247	52.97	54.596	-3.2944					58	31	3	0	0	0	0.027441	1	3707	3707		58.782	0	1	141190	+		28871	25129	23684	23711	32120	32120					0.11059133608296179
LEKLKDPYK	9	Unmodified	_LEKLKDPYK_					0	0	0			REV__tr|A0A7D6ZVD1|A0A7D6ZVD1_9CLOTABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03545PE=3SV=1	REV__tr|A0A7D6ZVD1|A0A7D6ZVD1_9CLOTABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03545PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3290405273438	2	567.331882	1132.64921	-2.3399	-0.0013275	-1.3687	-0.0007765	-3.7086	-0.002104	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.63422	1	14764	14764		27.882	0	1	241060	+		28872	32247	23685	23712	32121	32121					0.08819158199935373
LEKLMKAFE	9	Unmodified	_LEKLMKAFE_					0	0	0		ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	MULTI-SECPEP	OvCa9_classI_Rep2	2	554.8282470703125	2	554.807185	1107.59982	0.89197	0.00049487	3.5768	0.0019845	4.4688	0.0024793	554.8084331224267	64.848	0.68245	62.123	61.758	62.44	-2.7245					16	12	2	0	0	0	0.027462	1	4979	4979		34.173	0	1	15997			28873	8708	23686	23713	32122	32122					0.050321269195137575
LEKLNQQLL	9	Unmodified	_LEKLNQQLL_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-MSMS	OvCa9_classI_Rep2	2	549.8292236328125	2	549.829506	1097.64446	0.80067	0.00044023	-1.6255	-0.00089376	-0.82486	-0.00045353	549.8286388284898	82.164	4.5681	80.515	79.767	84.335	-1.6485					186	90	5	0	0	0	0.012051	1	6999	6999		162.25	4.9234	1	3206100			28874	7361	23687	23714	32123	32123					0.09954274057213297
LEKLNWVRLP	10	Unmodified	_LEKLNWVRLP_					0	0	0		ENSG00000104998|ENST00000263379|IL27RA	ENSG00000104998|ENST00000263379|IL27RA	ENSG00000104998|ENST00000263379|IL27RA	MULTI-MSMS	OvCa9_classI_Rep2	2	634.3783569335938	2	634.379697	1266.74484	-5.7659	-0.0036578	3.1969	0.0020281	-2.569	-0.0016297	634.3814892688545	163.56	1.4089	163.33	162.75	164.16	-0.22696					114	47	3	0	0	0	0.7759	1	16698	16698		21.96	1.9631	1	320930			28875	2417	23688	23715	32124	32124					0.12213931110863996
LEKLQTFEGTE	11	Unmodified	_LEKLQTFEGTE_					0	0	0			REV__ENST00000412878.2_1_10:53079965-53080385:+|nuORF	REV__ENST00000412878.2_1_10:53079965-53080385:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	431.8624572753906	3	432.222359	1293.64525	-0.36077	-0.00015593	-0.44341	-0.00019165	-0.80418	-0.00034758	432.222200899437	59.592	2.2773	59.592	59.265	61.542	0					136	55	5	0	0	0	0.025863	1	5113	5113		14.779	0	1	33411000	+		28876	25501	23689	23716	32125	32125					0.010170239155513627
LEKLRLLNDL	10	Unmodified	_LEKLRLLNDL_					0	0	0			REV__nc|ENSG00000105341|Q9NW81-5|DMAC2	REV__nc|ENSG00000105341|Q9NW81-5|DMAC2	MULTI-MSMS	OvCa9_classI_Rep3	3	409.5882568359375	3	409.587084	1225.73942	1.9489	0.00079826	-0.69775	-0.00028579	1.2512	0.00051247	409.5866589829611	66.281	1.6712	63.335	62.959	64.63	-2.9459					68	32	4	0	0	0	0.72142	1	2702	2702		28.081	0	1	144930	+		28877	17713	23690	23717	32126	32126					0.13558207528376442
LEKLTGGEVL	10	Unmodified	_LEKLTGGEVL_					0	0	0		tr|A0A553SUH0|A0A553SUH0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_07005PE=3SV=1	tr|A0A553SUH0|A0A553SUH0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_07005PE=3SV=1	tr|A0A553SUH0|A0A553SUH0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_07005PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.809814453125	2	529.808239	1057.60193	2.3904	0.0012665	3.715	0.0019682	6.1054	0.0032347	529.8080074192247	95.913	0.8447	95.913	95.615	96.459	0					56	19	4	0	0	0	0.47142	1	10487	10487		58.23	0	1	1161400			28878	34608	23691	23718	32127	32127					0.07542878928961727
LEKMRWII	8	Unmodified	_LEKMRWII_					0	0	0			REV__tr|A0A7D6VWF8|A0A7D6VWF8_9CLOTDUF1835domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08200PE=4SV=1	REV__tr|A0A7D6VWF8|A0A7D6VWF8_9CLOTDUF1835domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08200PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	544.299072265625	2	544.817887	1087.62122	0.75678	0.00041231	2.4416	0.0013302	3.1984	0.0017425	544.8190664877862	91.542	0.94791	90.307	90.061	91.009	-1.2355					36	17	3	0	0	0	0.028476	1	8184	8184		29.15	0	1	94839	+		28879	31746	23692	23719	32128	32128					0.08091556738872896
LEKNKLELN	9	Unmodified	_LEKNKLELN_					0	0	0			REV__tr|A0A7D6VP05|A0A7D6VP05_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14755PE=4SV=1	REV__tr|A0A7D6VP05|A0A7D6VP05_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14755PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	549.8297729492188	2	550.819138	1099.62372	0.97464	0.00053685	-0.84575	-0.00046585	0.12889	7.0994E-05	550.8187519480866	82.389	0.77592	80.79	80.593	81.369	-1.5988					37	14	3	0	0	0	0.027259	1	7017	7017		110.12	0	1	91890	+		28880	31219	23693	23720	32129	32129					0.07789683677515313
LEKNKLELN	9	Unmodified	_LEKNKLELN_					0	0	0			REV__tr|A0A7D6VP05|A0A7D6VP05_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14755PE=4SV=1	REV__tr|A0A7D6VP05|A0A7D6VP05_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14755PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.8301391601562	2	550.819138	1099.62372	0.035431	1.9516E-05	0.035813	1.9726E-05	0.071244	3.9243E-05	550.8191121780541	83.653	0.77751	80.99	80.681	81.458	-2.6629					37	15	3	0	0	0	0.027137	1	6989	6989		87.696	20.203	1	96203	+		28881	31219	23693	23720	32130	32130					0.07789683677515313
LEKNKQILVL	10	Unmodified	_LEKNKQILVL_					0	0	0		ENSG00000196503|ENST00000640821|ARL9	ENSG00000196503|ENST00000640821|ARL9	ENSG00000196503|ENST00000640821|ARL9	MULTI-MSMS	OvCa9_classI_Rep3	3	599.3811645507812	2	599.381906	1196.74926	-5.1251	-0.0030719	2.9172	0.0017485	-2.2079	-0.0013234	599.3837594263146	163.98	0.39844	162.59	162.3	162.69	-1.3925					19	8	3	0	0	0	0.79917	1	14306	14306		19.104	0	1	1825400			28882	8616	23694	23721	32131	32131					0.15875395533748815
LEKNQITAL	9	Unmodified	_LEKNQITAL_					0	0	0		nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;ENST00000538453.5_1_16:57103718-57116437:+|nuORF;ENST00000545081.5_1_16:57093337-57116437:+|nuORF;ENST00000543049.1_1_16:57114926-57116437:+|nuORF;ENST00000543103.1_1_16:57115217-57116437:+|nuORF	nc|ENSG00000140853|Q86WI3-4|NLRC5	nc|ENSG00000140853|Q86WI3-4|NLRC5	MULTI-MSMS	OvCa9_classI_Rep2	2	515.301025390625	2	515.300581	1028.58661	-0.71327	-0.00036755	1.3484	0.00069485	0.63517	0.0003273	515.3010385104841	103.22	1.4324	102.53	102.23	103.66	-0.68459					89	28	4	0	0	0	0.42576	1	9533	9533		49.536	1.5765	1	289490			28883	4878	23695	23722	32132	32132					0.07346012131756652
LEKPIRLTH	9	Unmodified	_LEKPIRLTH_					0	0	0		nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;ENSG00000160111|ENST00000443236|CPAMD8	nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.3250732421875	2	553.837665	1105.66078	-0.29026	-0.00016076	1.4761	0.00081751	1.1858	0.00065675	553.8383404074492	106.04	1.3939	104.02	103.74	105.14	-2.0161					50	26	3	0	0	0	0.027455	1	9708	9708		51.335	8.9393	1	114600			28884	6038	23696	23723	32133	32133					0.11217400013924816
LEKPIRLTH	9	Unmodified	_LEKPIRLTH_					0	0	0		nc|ENSG00000160111|Q8IZJ3-2|CPAMD8;ENSG00000160111|ENST00000443236|CPAMD8	nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	MULTI-MATCH	OvCa9_classI_Rep2	2		2	553.837665	1105.66078	0.10264	5.6844E-05	-0.16936	-9.3797E-05	-0.066721	-3.6953E-05	553.837484757586	104.32	1.2373	103.74	103.47	104.71	-0.57639	-0.14083	-0.00072569	NaN	51.335	48	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87388			28885	6038	23696	23723							0.11217400013924816
LEKPLITL	8	Unmodified	_LEKPLITL_					0	0	0			REV__ENSG00000137338|ENST00000682144|PGBD1	REV__ENSG00000137338|ENST00000682144|PGBD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.7989196777344	2	463.799686	925.584819	-1.4154	-0.00065646	-2.4017	-0.0011139	-3.8171	-0.0017704	463.7985594679424	71.828	2.2794	68.371	68.074	70.354	-3.4563					134	46	4	0	0	0	0.64026	1	5553	5553		55.504	0	1	2935000	+		28886	19446	23697	23724	32134	32134					0.11905003113804469
LEKPYFPNR	9	Unmodified	_LEKPYFPNR_					0	0	0		ENSG00000182150|ENST00000653738|ERCC6L2;nc|ENSG00000182150|Q5T890-2|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.2816162109375	2	582.314023	1162.61349	1.6316	0.00095008	-0.66199	-0.00038549	0.96957	0.00056459	582.3113616591961	77.568	0.50425	77.568	77.252	77.757	0					24	11	3	0	0	0	0.027447	1	7850	7850		47.657	16.128	1	244100			28887	7971	23698	23725	32135	32135					0.03869120742933774
LEKQLAIEL	9	Unmodified	_LEKQLAIEL_					0	0	0		ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1;nc|ENSG00000123143|Q16512-3|PKN1;ENST00000585839.5_1_19:14544333-14578454:+|nuORF;PKN1|p.M704Sfs*38|1|0.04|ENSG00000123143|chr19:14469475-14469475|T/-|frameshift_variant;ENST00000587429.1_1_19:14544333-14557253:+|nuORF	ENSG00000123143|ENST00000242783|PKN1	ENSG00000123143|ENST00000242783|PKN1	MULTI-MSMS	OvCa99_classI_Rep5	1	528.8202514648438	2	528.818607	1055.62266	1.9559	0.0010343	0.21128	0.00011173	2.1671	0.001146	528.818439497973	99.917	0.41177	99.917	99.694	100.11	0					20	9	3	0	0	0	0.14445	1	11060	11060		85.862	8.5442	1	1251100			28888	3576	23699	23726	32136	32136					0.09707469308591499
LEKQLAIEL	9	Unmodified	_LEKQLAIEL_					0	0	0		ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1;nc|ENSG00000123143|Q16512-3|PKN1;ENST00000585839.5_1_19:14544333-14578454:+|nuORF;PKN1|p.M704Sfs*38|1|0.04|ENSG00000123143|chr19:14469475-14469475|T/-|frameshift_variant;ENST00000587429.1_1_19:14544333-14557253:+|nuORF	ENSG00000123143|ENST00000242783|PKN1	ENSG00000123143|ENST00000242783|PKN1	MULTI-MSMS	OvCa9_classI_Rep2	2	528.8184204101562	2	528.818607	1055.62266	-1.5272	-0.00080763	0.70097	0.00037069	-0.82626	-0.00043694	528.8190270551064	100.56	0.8934	99.732	99.459	100.35	-0.83051					47	17	3	0	0	0	0.23241	1	9199	9199		70.816	6.6089	1	230190			28889	3576	23699	23726	32137	32137					0.09707469308591499
LEKQLKEVF	9	Unmodified	_LEKQLKEVF_					0	0	0		nc|ENSG00000187398|Q86TE4-3|LUZP2;nc|ENSG00000187398|Q86TE4-2|LUZP2;ENST00000405855.6_1_11:24518789-24853530:+|nuORF;ENST00000531187.5_1_11:24518651-24912476:+|nuORF;ENST00000449567.6_1_11:24518651-24807587:+|nuORF;ENSG00000187398|ENST00000336930|LUZP2	nc|ENSG00000187398|Q86TE4-3|LUZP2	nc|ENSG00000187398|Q86TE4-3|LUZP2	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3302612304688	2	567.331882	1132.64921	-2.3399	-0.0013275	-1.3687	-0.0007765	-3.7086	-0.002104	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.60342	1	14739	14739		31.53	4.7337	1	241060			28890	8400	23700	23727	32138	32138					0.0881915819995811
LEKQLQQYMP	10	Unmodified	_LEKQLQQYMP_					0	0	0			REV__nc|ENSG00000107949|Q9P287-4|BCCIP	REV__nc|ENSG00000107949|Q9P287-4|BCCIP	MULTI-MSMS	OvCa99_classI_Rep5	1	639.8363647460938	2	639.331556	1276.64856	1.5936	0.0010188	0.32015	0.00020468	1.9137	0.0012235	639.3316958384813	93.532	0.74257	93.532	93.221	93.964	0					35	17	4	0	0	0	0.3094	1	10169	10169		79.713	33.256	1	4798100	+		28891	17867	23701	23728	32139	32139					0.02129995488598979
LEKQQGQP	8	Unmodified	_LEKQQGQP_					0	0	0		ENSG00000163207|ENST00000368764|IVL	ENSG00000163207|ENST00000368764|IVL	ENSG00000163207|ENST00000368764|IVL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.2841796875	2	464.248349	926.482145	-0.73038	-0.00033908	-4.3246	-0.0020077	-5.055	-0.0023468	464.2455528942091	96.093	0.50668	93.668	93.406	93.913	-2.4256					12	9	2	0	0	0	0.028476	1	8450	8450		45.952	5.1738	1	19732			28892	6277	23702	23729	32140	32140					0.015963103750550545
LEKQSRKRRER	11	Unmodified	_LEKQSRKRRER_					0	0	0			REV__nc|ENSG00000291035|Q9NSQ0|RRP7BP	REV__nc|ENSG00000291035|Q9NSQ0|RRP7BP	MULTI-MSMS	OvCa9_classI_Rep2	2	495.957763671875	3	495.962207	1484.86479	-4.8163	-0.0023887	-2.3422	-0.0011617	-7.1585	-0.0035504	495.96094978154576	162.14	1.4092	161.91	160.94	162.35	-0.22696					77	27	3	0	0	0	0.72488	1	16452	16452		17.167	11.166	1	83644	+		28893	24790	23703	23730	32141	32141					0.14175312437328103
LEKQSRKRRER	11	Unmodified	_LEKQSRKRRER_					0	0	0			REV__nc|ENSG00000291035|Q9NSQ0|RRP7BP	REV__nc|ENSG00000291035|Q9NSQ0|RRP7BP	MULTI-MSMS	OvCa9_classI_Rep3	3	495.95843505859375	3	495.962207	1484.86479	-6.9468	-0.0034453	-0.084622	-4.1969E-05	-7.0314	-0.0034873	495.96210445138047	163.05	2.2058	161.66	160.17	162.38	-1.3926					163	48	5	0	0	0	0.72524	3	14214	14121;14140;14214		12.433	2.4062	1	227040	+		28894	24790	23703	23730	32142;32143;32144	32144					0.14175312437328103
LEKQSTQI	8	Unmodified	_LEKQSTQI_					0	0	0			REV__ENST00000588751.5_2_19:56403369-56407359:-|nuORF	REV__ENST00000588751.5_2_19:56403369-56407359:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	473.7638244628906	2	473.763832	945.513111	-0.59409	-0.00028146	1.1325	0.00053654	0.53842	0.00025508	473.764393322028	39.779	2.609	39.779	39.547	42.156	0					136	58	4	0	0	0	0.6962	1	2429	2429		44.117	0	1	28423000	+		28895	27893	23704	23731	32145	32145					0.03817463689301803
LEKRDYNLRRL	11	Unmodified	_LEKRDYNLRRL_					0	0	0			REV__ENST00000531657.1_1_11:70218293-70228249:+|nuORF	REV__ENST00000531657.1_1_11:70218293-70228249:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	492.61944580078125	3	492.619558	1474.83684	-0.93979	-0.00046296	0.29074	0.00014322	-0.64905	-0.00031974	492.6196655584546	26.268	0.69951	26.268	26.042	26.742	0					33	13	4	0	0	0	0.71582	1	664	664		24.232	1.6702	1	333780	+		28896	19024	23705	23732	32146	32146					0.11841989457207092
LEKRLSLL	8	Unmodified	_LEKRLSLL_					0	0	0		nc|ENSG00000175920|Q18PE1-2|DOK7;chr4:3500403-3500692|393|16.8|0.0|20.68|+|ENST00000643608|DOK7,DOK7;chr4:3496862-3500251|354|12.82|0.0|20.29|+|ENST00000643608|DOK7,DOK7;chr4:3493483-3496820|384|12.32|0.64|4.28|+|ENST00000643608|DOK7,DOK7;ENSG00000175920|ENST00000340083|DOK7;nc|ENSG00000175920|Q18PE1-3|DOK7	nc|ENSG00000175920|Q18PE1-2|DOK7	nc|ENSG00000175920|Q18PE1-2|DOK7	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.2935485839844	2	486.316035	970.617516	1.8502	0.00089978	-0.11071	-5.3841E-05	1.7395	0.00084594	486.3159889034164	134.35	0.18591	134.35	134.2	134.38	0					5	3	2	0	0	0	0.028476	1	15632	15632		33.516	0	1	67267			28897	490	23706	23733	32147	32147					0.13103210236681662
LEKRLTLEP	9	Unmodified	_LEKRLTLEP_					0	0	0		nc|ENSG00000128881|Q6IQ55-2|TTBK2;ENSG00000128881|ENST00000267890|TTBK2;nc|ENSG00000128881|Q6IQ55-3|TTBK2;TTBK2|p.G531Afs*12|1|0.05|ENSG00000128881|chr15:42775541-42775542|-/AATAAACATAATTAAGG|frameshift_variant;TTBK2|p.T566Qfs*5|1|0.14|ENSG00000128881|chr15:42775438-42775438|C/-|frameshift_variant	nc|ENSG00000128881|Q6IQ55-2|TTBK2	nc|ENSG00000128881|Q6IQ55-2|TTBK2	MULTI-MSMS	OvCa99_classI_Rep5	1	549.830078125	2	549.829506	1097.64446	2.0083	0.0011042	-0.6702	-0.0003685	1.3381	0.00073573	549.8291049728731	79.959	3.6419	79.959	79.436	83.078	0					224	87	5	0	0	0	0.13482	1	8232	8232		87.754	0.057861	1	44234000			28898	3910	23707	23734	32148	32148					0.09954274057213297
LEKRQSPHVK	10	Unmodified	_LEKRQSPHVK_					0	0	0			REV__ENST00000244709.8_1_6:41243274-41243478:-|nuORF	REV__ENST00000244709.8_1_6:41243274-41243478:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	611.353271484375	2	611.356754	1220.69895	-3.1571	-0.0019301	2.0725	0.001267	-1.0847	-0.00066312	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.762	1	12974	12974		23.523	0.48021	1	666990	+		28899	23830	23708	23735	32149	32149					0.09743285928584555
LEKRRGGR	8	Unmodified	_LEKRRGGR_					0	0	0			REV__nc|ENSG00000048392|Q7LG56-6|RRM2B	REV__nc|ENSG00000048392|Q7LG56-6|RRM2B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.7794494628906	2	486.296499	970.578445	-0.50511	-0.00024563	2.8227	0.0013726	2.3175	0.001127	486.298508045636	91.689	1.0617	89.147	88.811	89.873	-2.5425					26	20	2	0	0	0	0.028476	1	7990	7990		35.618	6.4687	1	68492	+		28900	28713	23709	23736	32150	32150					0.09197922725672925
LEKRSPNKHL	10	Unmodified	_LEKRSPNKHL_					0	0	0			REV__CASD1|p.Y478Ffs*22|1|0.05|ENSG00000127995|chr7:94544486-94544487|-/TCATCCTTCACAAGAACCCTTCAAGGAAGGA|frameshift_variant	REV__CASD1|p.Y478Ffs*22|1|0.05|ENSG00000127995|chr7:94544486-94544487|-/TCATCCTTCACAAGAACCCTTCAAGGAAGGA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3552856445312	2	611.356754	1220.69895	-3.1571	-0.0019301	2.0725	0.001267	-1.0847	-0.00066312	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.70152	1	12900	12900		30.318	3.6248	1	666990	+		28901	15740	23710	23737	32151	32151					0.09743285928607293
LEKSAILFI	9	Unmodified	_LEKSAILFI_					0	0	0			REV__nc|ENSG00000162736|Q92542-2|NCSTN	REV__nc|ENSG00000162736|Q92542-2|NCSTN	MULTI-MSMS	OvCa99_classI_Rep5	1	517.3199462890625	2	517.318243	1032.62193	0.96606	0.00049976	4.3488	0.0022497	5.3148	0.0027495	517.3202379260042	113.76	1.271	113.76	113.38	114.65	0					66	29	3	0	0	0	0.28934	1	12999	12999		64.207	9.431	1	319070	+		28902	20773	23711	23738	32152	32152					0.10692674659571821
LEKSFYQF	8	Unmodified	_LEKSFYQF_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	OvCa99_classI_Rep5	1	531.2678833007812	2	531.26875	1060.52295	1.9808	0.0010523	0.75154	0.00039927	2.7323	0.0014516	531.2692001974557	92.644	0.6655	92.644	92.428	93.093	0					29	15	4	0	0	0	0.2357	1	10015	10015		118.74	10.656	1	4685100			28903	1102	23712	23739	32153	32153					-0.004893483053365344
LEKSIKRILSV	11	Unmodified	_LEKSIKRILSV_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	OvCa9_classI_Rep2	2	643.4078979492188	2	643.413737	1284.81292	-5.8857	-0.003787	-2.272	-0.0014618	-8.1578	-0.0052488	643.4123840837739	162.79	0.23622	162.57	162.4	162.64	-0.22696					12	4	4	0	0	0	0.65063	1	16588	16588		40.058	4.9061	1	972740	+		28904	21918	23713	23740	32154	32154					0.18190755970840655
LEKSIKRILSV	11	Unmodified	_LEKSIKRILSV_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	643.413737	1284.81292	-5.8857	-0.003787	-2.272	-0.0014618	-8.1578	-0.0052488	643.4123840837739	162.79	0.23622	162.57	162.4	162.64	-0.22696	0.022261	0.0011772	NaN	40.058	12	4	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	972740	+		28905	21918	23713	23740							0.18190755970840655
LEKSTIAVIGF	11	Unmodified	_LEKSTIAVIGF_					0	0	0		ENSG00000007933|ENST00000367755|FMO3	ENSG00000007933|ENST00000367755|FMO3	ENSG00000007933|ENST00000367755|FMO3	MULTI-MSMS	OvCa9_classI_Rep2	2	589.343017578125	2	589.344989	1176.67542	-3.0463	-0.0017953	-0.38122	-0.00022467	-3.4276	-0.00202	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.72064	1	14999	14999		22.58	0	1	272220			28906	907	23714	23741	32155	32155					0.09415427371436635
LEKSVWELE	9	Unmodified	_LEKSVWELE_					0	0	0		RFX7|p.Q1124Nfs*5|1|0.19|ENSG00000181827|chr15:56094059-56094068|GCTTCTTTGA/-|frameshift_variant;nc|ENSG00000181827|Q2KHR2-1|RFX7;nc|ENSG00000181827|Q2KHR2-2|RFX7;ENSG00000181827|ENST00000559447|RFX7	RFX7|p.Q1124Nfs*5|1|0.19|ENSG00000181827|chr15:56094059-56094068|GCTTCTTTGA/-|frameshift_variant	RFX7|p.Q1124Nfs*5|1|0.19|ENSG00000181827|chr15:56094059-56094068|GCTTCTTTGA/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	566.7988891601562	2	566.797872	1131.58119	1.1021	0.00062465	-0.35835	-0.00020311	0.74372	0.00042154	566.7976702890436	142.22	1.0957	142.22	141.83	142.93	0					31	19	3	0	0	0	0.34132	1	16618	16618		58.23	4.8785	1	97928			28907	7958	23715	23742	32156	32156					0.02066288549303863
LEKSYLLVVAS	11	Unmodified	_LEKSYLLVVAS_					0	0	0			REV__ENSG00000116906|ENST00000366647|GNPAT	REV__ENSG00000116906|ENST00000366647|GNPAT	MULTI-MSMS	OvCa9_classI_Rep2	2	611.35595703125	2	611.358096	1220.70164	-3.7398	-0.0022864	0.47754	0.00029195	-3.2623	-0.0019944	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.72064	2	15218	15154;15218		22.58	2.5829	1	331570	+		28908	18326	23716	23743	32157;32158	32158					0.10011696542937898
LEKSYLLVVAS	11	Unmodified	_LEKSYLLVVAS_					0	0	0			REV__ENSG00000116906|ENST00000366647|GNPAT	REV__ENSG00000116906|ENST00000366647|GNPAT	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3550415039062	2	611.358096	1220.70164	-3.1571	-0.0019301	-0.12375	-7.5658E-05	-3.2809	-0.0020058	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.68399	1	12872	12872		35.152	4.8343	1	666990	+		28909	18326	23716	23743	32159	32159					0.10011696542937898
LEKTESSLP	9	Unmodified	_LEKTESSLP_					0	0	0		ENSG00000168269|ENST00000306268|FOXI1	ENSG00000168269|ENST00000306268|FOXI1	ENSG00000168269|ENST00000306268|FOXI1	MULTI-MSMS	OvCa99_classI_Rep5	1	502.2699890136719	2	502.268947	1002.52334	-0.70136	-0.00035227	0.40146	0.00020164	-0.2999	-0.00015063	502.26916911601893	69.688	0.86174	69.688	69.228	70.089	0					41	20	3	0	0	0	0.22961	1	6653	6653		71.296	1.6681	1	2090100			28910	6885	23717	23744	32160	32160					0.02218026623870628
LEKTESSLP	9	Unmodified	_LEKTESSLP_					0	0	0		ENSG00000168269|ENST00000306268|FOXI1	ENSG00000168269|ENST00000306268|FOXI1	ENSG00000168269|ENST00000306268|FOXI1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	502.268947	1002.52334	-1.5056	-0.00075623	-5.1172	-0.0025702	-6.6228	-0.0033264	502.26591516547103	73.33	0.82286	69.934	69.64	70.462	-3.3961	0.12309	-0.0039954	NaN	71.296	28	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62961			28911	6885	23717	23744							0.02218026623870628
LEKTWHLLE	9	Unmodified	_LEKTWHLLE_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa99_classI_Rep5	1	584.823486328125	2	584.821681	1167.62881	2.2802	0.0013335	0.76231	0.00044581	3.0425	0.0017793	584.8219272755546	116.17	1.0008	116.17	115.73	116.73	0					48	21	4	0	0	0	0.22621	1	13274	13274		71.877	11.759	1	1535900	+		28912	28942;32737;28943	23718	23745	32161	32161					0.05169987540148213
LEKVFGIQL	9	Unmodified	_LEKVFGIQL_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MSMS	OvCa9_classI_Rep2	2	523.81591796875	2	523.815867	1045.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.28	1	122.06	121.56	122.56	-0.21803								0	0	0	0.042186	1	11836	11836		80.455	6.1996	1				28913	2236	23719	23746	32162	32162					0.09619790516831017
LEKVFGIQL	9	Unmodified	_LEKVFGIQL_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MSMS	OvCa9_classI_Rep4_	4	523.8152465820312	2	523.815867	1045.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.37	1	122	121.5	122.5	-1.3666								0	0	0	0.11682	1	11671	11671		68.846	8.7279	1				28914	2236	23719	23746	32163	32163					0.09619790516831017
LEKVFGIQL	9	Unmodified	_LEKVFGIQL_					0	0	0		nc|ENSG00000102316|Q9UNF1-2|MAGED2;ENSG00000102316|ENST00000375068|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	nc|ENSG00000102316|Q9UNF1-2|MAGED2	MSMS	OvCa9_classI_Rep4_	4	523.8152465820312	2	523.815867	1045.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.47	1	122.1	121.6	122.6	-1.3666								0	0	0	0.042186	1	11684	11684		80.455	6.1996	1				28915	2236	23719	23746	32164	32164					0.09619790516831017
LEKVGLVLRV	10	Unmodified	_LEKVGLVLRV_					0	0	0		ENSG00000168418|ENST00000308251|KCNG4	ENSG00000168418|ENST00000308251|KCNG4	ENSG00000168418|ENST00000308251|KCNG4	MULTI-MSMS	OvCa99_classI_Rep5	1	563.3701782226562	2	563.371341	1124.72813	0.18363	0.00010345	-2.9621	-0.0016687	-2.7784	-0.0015653	563.3695453478698	29.887	0.50072	29.887	29.735	30.236	0					24	9	4	0	0	0	0.66721	1	1102	1102		34.173	0	1	303010			28916	6907	23720	23747	32165	32165					0.17075430224872434
LEKVIVNNQ	9	Unmodified	_LEKVIVNNQ_					0	0	0		tr|A0A553SIW4|A0A553SIW4_NIACIGlycosyltransferasefamily2proteinOS=NialliacirculansOX=1397GN=CEQ21_15635PE=4SV=1	tr|A0A553SIW4|A0A553SIW4_NIACIGlycosyltransferasefamily2proteinOS=NialliacirculansOX=1397GN=CEQ21_15635PE=4SV=1	tr|A0A553SIW4|A0A553SIW4_NIACIGlycosyltransferasefamily2proteinOS=NialliacirculansOX=1397GN=CEQ21_15635PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	529.3053588867188	2	528.806031	1055.59751	-1.2413	-0.00065642	-1.9712	-0.0010424	-3.2125	-0.0016988	529.3059963064875	103.84	3.275	103.27	102.83	106.11	-0.57639					87	65	2	0	0	0	0.48047	1	9631	9631		44.377	5.571	1	765080			28917	33433	23721	23748	32166	32166					0.07193414506036788
LEKVKSVFP	9	Unmodified	_LEKVKSVFP_					0	0	0			REV__CDC42BPG|p.V230Gfs*13|1|0.12|ENSG00000171219|chr11:64839220-64839221|-/GGCACGTCCGGGGGGAACTGCAGGTGGTC|frameshift_variant	REV__CDC42BPG|p.V230Gfs*13|1|0.12|ENSG00000171219|chr11:64839220-64839221|-/GGCACGTCCGGGGGGAACTGCAGGTGGTC|frameshift_variant	MSMS	OvCa9_classI_Rep2	2	523.8154907226562	2	523.815867	1045.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.14	1	121.92	121.42	122.42	-0.21803								0	0	0	0.039743	1	11819	11819		82.241	7.1972	1		+		28918	15765	23722	23749	32167	32167					0.0961979051680828
LEKVKSVFP	9	Unmodified	_LEKVKSVFP_					0	0	0			REV__CDC42BPG|p.V230Gfs*13|1|0.12|ENSG00000171219|chr11:64839220-64839221|-/GGCACGTCCGGGGGGAACTGCAGGTGGTC|frameshift_variant	REV__CDC42BPG|p.V230Gfs*13|1|0.12|ENSG00000171219|chr11:64839220-64839221|-/GGCACGTCCGGGGGGAACTGCAGGTGGTC|frameshift_variant	MSMS	OvCa9_classI_Rep2	2	523.816162109375	2	523.815867	1045.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.18	1	121.97	121.47	122.47	-0.21803								0	0	0	0.023656	1	11824	11824		98.629	5.4339	1		+		28919	15765	23722	23749	32168	32168					0.0961979051680828
LEKVKSVFP	9	Unmodified	_LEKVKSVFP_					0	0	0			REV__CDC42BPG|p.V230Gfs*13|1|0.12|ENSG00000171219|chr11:64839220-64839221|-/GGCACGTCCGGGGGGAACTGCAGGTGGTC|frameshift_variant	REV__CDC42BPG|p.V230Gfs*13|1|0.12|ENSG00000171219|chr11:64839220-64839221|-/GGCACGTCCGGGGGGAACTGCAGGTGGTC|frameshift_variant	MSMS	OvCa9_classI_Rep3	3	523.8150634765625	2	523.815867	1045.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.03	1	121.99	121.49	122.49	-1.0377								0	0	0	0.16802	1	9479	9479		56.721	5.5284	1		+		28920	15765	23722	23749	32169	32169					0.0961979051680828
LEKVKSVFP	9	Unmodified	_LEKVKSVFP_					0	0	0			REV__CDC42BPG|p.V230Gfs*13|1|0.12|ENSG00000171219|chr11:64839220-64839221|-/GGCACGTCCGGGGGGAACTGCAGGTGGTC|frameshift_variant	REV__CDC42BPG|p.V230Gfs*13|1|0.12|ENSG00000171219|chr11:64839220-64839221|-/GGCACGTCCGGGGGGAACTGCAGGTGGTC|frameshift_variant	MSMS	OvCa9_classI_Rep3	3	523.8159790039062	2	523.815867	1045.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.09	1	122.05	121.55	122.55	-1.0377								0	0	0	0.16802	1	9486	9486		56.721	3.7844	1		+		28921	15765	23722	23749	32170	32170					0.0961979051680828
LEKVRKEP	8	Unmodified	_LEKVRKEP_					0	0	0			REV__ENST00000441788.6_1_19:3537705-3537831:+|nuORF	REV__ENST00000441788.6_1_19:3537705-3537831:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.8055114746094	2	499.803291	997.59203	1.033	0.00051629	0.32167	0.00016077	1.3547	0.00067706	499.80330248703143	85.532	1.3325	82.886	82.361	83.693	-2.6463					54	26	3	0	0	0	0.53531	1	7203	7203		73.975	5.1879	1	309270	+		28922	25847	23723	23750	32171	32171					0.09313735714238192
LEKVRREHK	9	Unmodified	_LEKVRREHK_					0	0	0			REV__nc|ENSG00000078814|A7E2Y1|MYH7B;REV__ENSG00000133020|ENST00000403437|MYH8;REV__ENSG00000264424|ENST00000255381|MYH4	REV__ENSG00000264424|ENST00000255381|MYH4	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8552856445312	2	597.856921	1193.69929	-3.1766	-0.0018991	2.2834	0.0013652	-0.89312	-0.00053396	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.67509	1	15062	15062		23.042	2.0956	1	436470	+		28923	19118;23581;17031	23724	23751	32172	32172					0.11018705648461946
LEKVSKIIEY	10	Unmodified	_LEKVSKIIEY_					0	0	0			REV__tr|A0A7D7A3C7|A0A7D7A3C7_9CLOTPadRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_06235PE=4SV=1	REV__tr|A0A7D7A3C7|A0A7D7A3C7_9CLOTPadRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_06235PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	611.354248046875	2	611.358096	1220.70164	-3.7398	-0.0022864	0.47754	0.00029195	-3.2623	-0.0019944	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.73378	1	15378	15378		26.693	4.733	1	331570	+		28924	32579	23725	23752	32173	32173					0.10011696542937898
LEKWKYPRKRV	11	Unmodified	_LEKWKYPRKRV_					0	0	0		ENST00000605834.1_1_4:185396718-185397009:+|nuORF	ENST00000605834.1_1_4:185396718-185397009:+|nuORF	ENST00000605834.1_1_4:185396718-185397009:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	501.63299560546875	3	501.636661	1501.88815	-5.5139	-0.002766	0.35993	0.00018055	-5.154	-0.0025854	501.63686894791874	162.29	1.9089	162.06	160.59	162.5	-0.22696					90	37	3	0	0	0	0.72548	1	16515	16515		9.2118	2.8909	1	106580			28925	14270	23726	23753	32174	32174					0.15728358221895178
LEKWKYPRKRV	11	Unmodified	_LEKWKYPRKRV_					0	0	0		ENST00000605834.1_1_4:185396718-185397009:+|nuORF	ENST00000605834.1_1_4:185396718-185397009:+|nuORF	ENST00000605834.1_1_4:185396718-185397009:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	501.6338195800781	3	501.636661	1501.88815	-7.1576	-0.0035905	1.9793	0.00099288	-5.1783	-0.0025976	501.63774554440306	163.54	2.3462	162.14	160.37	162.72	-1.3925					135	52	3	0	0	0	0.7252	4	14149	14122;14149;14161;14182		12.957	6.9564	1	91935			28926	14270	23726	23753	32175;32176;32177;32178	32176					0.15728358221895178
LEKWKYPRKRV	11	Unmodified	_LEKWKYPRKRV_					0	0	0		ENST00000605834.1_1_4:185396718-185397009:+|nuORF	ENST00000605834.1_1_4:185396718-185397009:+|nuORF	ENST00000605834.1_1_4:185396718-185397009:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.63360595703125	3	501.636661	1501.88815	-6.9477	-0.0034852	1.7167	0.00086114	-5.231	-0.0026241	501.6376473335916	163.82	2.1567	162.19	160.45	162.61	-1.6336					144	60	3	0	0	0	0.72555	2	16115	16115;16123		8.4073	4.9985	1	101620			28927	14270	23726	23753	32179;32180	32179					0.15728358221895178
LEKWKYPRKRV	11	Unmodified	_LEKWKYPRKRV_					0	0	0		ENST00000605834.1_1_4:185396718-185397009:+|nuORF	ENST00000605834.1_1_4:185396718-185397009:+|nuORF	ENST00000605834.1_1_4:185396718-185397009:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.6352233886719	3	501.636661	1501.88815	-6.934	-0.0034783	3.0032	0.0015065	-3.9308	-0.0019718	501.6380201941158	164.12	0.35674	162.49	162.25	162.61	-1.6336					13	7	2	0	0	0	0.72555	1	16193	16193		8.4073	1.7476	1	168490			28928	14270	23726	23753	32181	32181					0.15728358221895178
LEKYVISTKL	10	Unmodified	_LEKYVISTKL_					0	0	0			REV__tr|A0A7D6ZII5|A0A7D6ZII5_9CLOTLTAsynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04435PE=3SV=1	REV__tr|A0A7D6ZII5|A0A7D6ZII5_9CLOTLTAsynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04435PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	597.3583374023438	2	597.360639	1192.70673	-5.052	-0.0030179	1.7912	0.00107	-3.2607	-0.0019478	597.3615454958483	157.14	0.96848	155.97	155.65	156.62	-1.1707					64	22	4	0	0	0	0.83835	1	13552	13552		14.137	0.68308	1	132000	+		28929	32058	23727	23754	32182	32182					0.11808000405494568
LELARRLREFR	11	Unmodified	_LELARRLREFR_					0	0	0			REV__SLTM|p.M629L|1|0.06|ENSG00000137776|chr15:58892910-58892910|T/A|missense_variant	REV__SLTM|p.M629L|1|0.06|ENSG00000137776|chr15:58892910-58892910|T/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	486.95770263671875	3	486.959915	1457.85791	-4.5662	-0.0022236	2.6742	0.0013022	-1.892	-0.00092135	486.96097052321403	158.19	2.6802	157.96	156.57	159.25	-0.22697					116	71	2	0	0	0	0.72555	1	16095	16095		8.4073	2.0864	1	34308	+		28930	29376	23728	23755	32183	32183					0.14729999556698203
LELAWVQQP	9	Unmodified	_LELAWVQQP_					0	0	0			REV__ENSG00000113196|ENST00000231121|HAND1	REV__ENSG00000113196|ENST00000231121|HAND1	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.8226928710938	2	542.295299	1082.57605	2.1167	0.0011479	0.97867	0.00053073	3.0953	0.0016786	542.2961623290867	85.813	0.40879	85.813	85.705	86.113	0					14	9	2	0	0	0	0.027448	1	9026	9026		44.117	0	1	285080	+		28931	18137	23729	23756	32184	32184					0.038060294773458736
LELDQGGEPN	10	Unmodified	_LELDQGGEPN_					0	0	0			REV__ENST00000299492.8_1_11:7674516-7674630:+|nuORF	REV__ENST00000299492.8_1_11:7674516-7674630:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	536.2501831054688	2	536.251286	1070.48802	2.2652	0.0012147	-4.0121	-0.0021515	-1.7469	-0.00093678	536.2490458807978	120.46	1.5758	119.43	119.12	120.69	-1.0271					80	30	4	0	0	0	0.38315	1	9224	9224		70.816	3.3225	1	464170	+		28932	24222	23730	23757	32185	32185					-0.04440635903938528
LELEQLACLLL	11	Unmodified	_LELEQLACLLL_					0	0	0		ENST00000466933.1_1_20:60758097-60768815:+|nuORF	ENST00000466933.1_1_20:60758097-60768815:+|nuORF	ENST00000466933.1_1_20:60758097-60768815:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	420.23486328125	3	419.908947	1256.70501	1.3283	0.00055775	1.5165	0.00063678	2.8447	0.0011945	419.90966179075286	91.493	0.84283	90.257	90.061	90.904	-1.2355					20	15	2	0	0	0	0.025638	1	8098	8098		39.873	0.62032	1	31691			28933	12301	23731	23758	32186	32186					0.08692623325259774
LELFPKLL	8	Unmodified	_LELFPKLL_					0	0	0		NXF3|p.E411Gfs*9|1|0.08|ENSG00000147206|chrX:103079462-103079463|-/C|frameshift_variant;ENSG00000147206|ENST00000395065|NXF3	NXF3|p.E411Gfs*9|1|0.08|ENSG00000147206|chrX:103079462-103079463|-/C|frameshift_variant	NXF3|p.E411Gfs*9|1|0.08|ENSG00000147206|chrX:103079462-103079463|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.8106689453125	2	486.810054	971.605554	2.9731	0.0014473	-3.1013	-0.0015098	-0.12826	-6.2438E-05	486.80837264323793	130.6	1.3349	129.12	128.81	130.14	-1.478					69	27	4	0	0	0	0.73938	1	12607	12607		31.955	0	1	239820			28934	5342	23732	23759	32187	32187					0.11861593493460987
LELFRRRG	8	Unmodified	_LELFRRRG_					0	0	0			REV__ENST00000437750.2_1_11:20429511-20429577:+|nuORF	REV__ENST00000437750.2_1_11:20429511-20429577:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	523.8156127929688	2	523.814525	1045.6145	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.63	1	122.26	121.76	122.76	-1.3666								0	0	0	0.30129	1	11703	11703		63.306	1.1989	1		+		28935	25799	23733	23760	32188	32188					0.09351379902523149
LELGKGINPLP	11	Unmodified	_LELGKGINPLP_					0	0	0		tr|A0A553SKS1|A0A553SKS1_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_19280PE=3SV=1	tr|A0A553SKS1|A0A553SKS1_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_19280PE=3SV=1	tr|A0A553SKS1|A0A553SKS1_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_19280PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8423461914062	2	575.845156	1149.67576	-4.018	-0.0023138	0.54994	0.00031668	-3.4681	-0.0019971	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.70142	1	12205	12205		29.17	1.2878	1	445630			28936	33645	23734	23761	32189	32189					0.10690847091291289
LELGNSPAPD	10	Unmodified	_LELGNSPAPD_					0	0	0			REV__ENST00000376714.7_1_13:96705526-96705706:-|nuORF	REV__ENST00000376714.7_1_13:96705526-96705706:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	506.75262451171875	2	506.750921	1011.48729	2.6174	0.0013264	-0.016089	-8.1532E-06	2.6014	0.0013182	506.75083593777885	86.368	0.85772	86.368	86.073	86.931	0					55	20	4	0	0	0	0.36605	1	9133	9133		72.879	9.573	1	9716100	+		28937	25104	23735	23762	32190	32190					-0.017994305530010024
LELGNSPAPD	10	Unmodified	_LELGNSPAPD_					0	0	0			REV__ENST00000376714.7_1_13:96705526-96705706:-|nuORF	REV__ENST00000376714.7_1_13:96705526-96705706:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	506.750921	1011.48729	2.6174	0.0013264	-0.016089	-8.1532E-06	2.6014	0.0013182	506.75083593777885	86.368	0.85772	86.368	86.073	86.931	0	0	0	NaN	72.879	55	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9716100	+		28938	25104	23735	23762							-0.017994305530010024
LELGPEADQPE	11	Unmodified	_LELGPEADQPE_					0	0	0		nc|ENSG00000165271|Q9H6R4-3|NOL6;NOL6|p.W912Lfs*20|1|0.05|ENSG00000165271|chr9:33464924-33464925|-/TCTTTAAATGGGTGACCTGGGGGAG|frameshift_variant;nc|ENSG00000165271|Q9H6R4-2|NOL6;nc|ENSG00000165271|Q9H6R4-4|NOL6;ENSG00000165271|ENST00000297990|NOL6	nc|ENSG00000165271|Q9H6R4-3|NOL6	nc|ENSG00000165271|Q9H6R4-3|NOL6	MULTI-MSMS	OvCa99_classI_Rep5	1	599.2918090820312	2	599.285325	1196.5561	1.3044	0.00078172	1.3958	0.0008365	2.7002	0.0016182	599.2859178619075	155.47	0.86929	155.47	155.12	155.99	0					35	16	3	0	0	0	0.63561	1	18243	18243		41.427	0	1	103380			28939	6542	23736	23763	32191	32191					-0.03431811043969901
LELHCQVMF	9	Unmodified	_LELHCQVMF_					0	0	0		nc|ENSG00000111642|Q14839-2|CHD4;ENSG00000111642|ENST00000544040|CHD4	nc|ENSG00000111642|Q14839-2|CHD4	nc|ENSG00000111642|Q14839-2|CHD4	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.830322265625	2	560.269912	1118.52527	2.5334	0.0014194	4.2713	0.0023931	6.8047	0.0038125	560.2726497988884	118.18	1.0712	118.18	117.51	118.58	0					30	22	2	0	0	0	0.027448	1	13508	13508		27.882	12.24	1	66684			28940	14960	23737	23764	32192	32192					-0.02924959163510721
LELIGDLEV	9	Unmodified	_LELIGDLEV_					0	0	0		tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.76422119140625	2	500.78169	999.548827	-0.60779	-0.00030437	0.20904	0.00010468	-0.39875	-0.00019968	500.78027327520164	41.606	0.30543	41.606	41.375	41.681	0					11	6	3	0	0	0	0.027462	1	2608	2608		23.042	0	1	103270			28941	35116	23738	23765	32193	32193					0.04903501146293365
LELIGDLEV	9	Unmodified	_LELIGDLEV_					0	0	0		tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	500.78169	999.548827	-0.19226	-9.628E-05	-2.5285	-0.0012662	-2.7208	-0.0013625	500.7800562902723	44.237	1.0452	41.527	41.153	42.199	-2.7097	-0.0088971	-0.0011563	NaN	29.15	28	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26464			28942	35116	23738	23765							0.04903501146293365
LELIGTNIN	9	Unmodified	_LELIGTNIN_					0	0	0		ENST00000548511.5_1_12:88439351-88442196:+|nuORF;ENST00000547468.1_1_12:88436564-88442196:+|nuORF;nc|ENSG00000133641|Q8N999-3|RLIG1;ENSG00000133641|ENST00000356891|C12orf29;ENST00000550333.5_1_12:88429286-88442196:+|nuORF;ENST00000552847.5_1_12:88429328-88439561:+|nuORF	ENST00000548511.5_1_12:88439351-88442196:+|nuORF	ENST00000548511.5_1_12:88439351-88442196:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.30120849609375	2	493.779482	985.544411	-0.70382	-0.00034753	0.76755	0.000379	0.06373	3.1469E-05	493.77999726819115	92.533	0.60806	89.99	89.669	90.277	-2.5425					24	11	3	0	0	0	0.027304	1	8066	8066		67.494	10.773	1	123490			28943	4230	23739	23766	32194	32194					0.051060367233731085
LELIPAIKAED	11	Unmodified	_LELIPAIKAED_					0	0	0			REV__tr|A0A7D6ZXC5|A0A7D6ZXC5_9CLOTElongationfactorTuOS=ClostridiumintestinaleOX=36845GN=tufPE=3SV=1	REV__tr|A0A7D6ZXC5|A0A7D6ZXC5_9CLOTElongationfactorTuOS=ClostridiumintestinaleOX=36845GN=tufPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3462524414062	2	606.347729	1210.6809	-1.0456	-0.00063399	-1.3007	-0.00078867	-2.3463	-0.0014227	606.3467602592541	57.544	1.2493	54.752	54.377	55.627	-2.792					65	24	4	0	0	0	0.70315	1	4111	4111		4.9057	0	1	227850	+		28944	32326	23740	23767	32195	32195					0.0839910616321049
LELKMITHL	9	Unmodified	_LELKMITHL_					0	0	0			REV__nc|ENSG00000178662|Q8WYN3-2|CSRNP3	REV__nc|ENSG00000178662|Q8WYN3-2|CSRNP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.2291259765625	2	549.323002	1096.63145	3.2386	0.0017791	1.8719	0.0010283	5.1105	0.0028073	549.3238540043243	88.511	0.5051	88.511	88.255	88.76	0					23	11	3	0	0	0	0.027072	1	9438	9438		101.6	37.393	1	594280	+		28945	18009	23741	23768	32196	32196					0.08700119673426343
LELKQEKERRL	11	Unmodified	_LELKQEKERRL_					0	0	0		nc|ENSG00000018189|Q7L099-4|RUFY3;ENSG00000018189|ENST00000381006|RUFY3	nc|ENSG00000018189|Q7L099-4|RUFY3	nc|ENSG00000018189|Q7L099-4|RUFY3	MULTI-MSMS	OvCa9_classI_Rep3	3	481.282470703125	3	481.287697	1440.84126	-6.6786	-0.0032143	-1.9719	-0.00094904	-8.6505	-0.0041634	481.2868612614486	161.01	3.7232	159.65	158.49	162.21	-1.3523					206	77	3	0	0	0	0.72511	1	14070	14070		14.086	0.57807	1	127690			28946	1010	23742	23769	32197	32197					0.13847453880134708
LELLDHVLL	9	Unmodified	_LELLDHVLL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OvCa99_classI_Rep5	1	532.8218994140625	2	532.82115	1063.62775	2.1598	0.0011508	-0.79185	-0.00042192	1.3679	0.00072885	532.8207598700657	137.42	1.7237	137.42	136.92	138.64	0					99	36	4	0	0	0	0.055688	2	16043	16019;16043		115.46	0	1	1927800			28947	4552	23743	23770	32198;32199	32199					0.0984777317123644
LELLFLIF	8	Unmodified	_LELLFLIF_					0	0	0			REV__ENSG00000074755|ENST00000381638|ZZEF1	REV__ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.3094177246094	2	504.312429	1006.61031	-0.31748	-0.00016011	-3.7857	-0.0019092	-4.1032	-0.0020693	504.3102186301609	122.18	1.1611	120.82	120.44	121.6	-1.3666					60	22	5	0	0	0	0.72922	1	11547	11547		37.028	1.8278	1	126760	+		28948	16953	23744	23771	32200	32200					0.10726477636251275
LELLHAEKR	9	Unmodified	_LELLHAEKR_					0	0	0		tr|A0A553SIW9|A0A553SIW9_NIACIFlagellarproteinFliTOS=NialliacirculansOX=1397GN=CEQ21_15655PE=4SV=1	tr|A0A553SIW9|A0A553SIW9_NIACIFlagellarproteinFliTOS=NialliacirculansOX=1397GN=CEQ21_15655PE=4SV=1	tr|A0A553SIW9|A0A553SIW9_NIACIFlagellarproteinFliTOS=NialliacirculansOX=1397GN=CEQ21_15655PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	555.7982177734375	2	554.827298	1107.64004	0.92094	0.00051096	-1.4973	-0.00083072	-0.57631	-0.00031975	554.8264474219247	66.618	1.0422	63.923	63.567	64.609	-2.6958					62	20	4	0	0	0	0.027462	1	5171	5171		21.96	0	1	208740			28949	33436	23745	23772	32201	32201					0.09052809634272307
LELLINKHI	9	Unmodified	_LELLINKHI_					0	0	0		ENSG00000106952|ENST00000223795|TNFSF8	ENSG00000106952|ENST00000223795|TNFSF8	ENSG00000106952|ENST00000223795|TNFSF8	MULTI-MSMS	OvCa9_classI_Rep2	2	546.8395385742188	2	546.842416	1091.67028	-4.8246	-0.0026383	1.033	0.00056488	-3.7916	-0.0020734	546.8429110027589	158.57	1.287	158.34	158.06	159.35	-0.22697					77	26	5	0	0	0	0.62352	3	16124	16124;16142;16155		29.15	4.4738	1	487190			28950	2579	23746	23773	32202;32203;32204	32202					0.12811168299458586
LELLINKHI	9	Unmodified	_LELLINKHI_					0	0	0		ENSG00000106952|ENST00000223795|TNFSF8	ENSG00000106952|ENST00000223795|TNFSF8	ENSG00000106952|ENST00000223795|TNFSF8	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.34326171875	2	546.842416	1091.67028	-6.4593	-0.0035322	2.5386	0.0013882	-3.9208	-0.0021441	546.8437237604664	159.32	1.8651	157.73	157.41	159.27	-1.5858					118	42	5	0	0	0	0.67509	1	15703	15703		23.042	4.7181	1	864300			28951	2579	23746	23773	32205	32205					0.12811168299458586
LELLKVTT	8	Unmodified	_LELLKVTT_					0	0	0			REV__tr|A0A7D7A2D7|A0A7D7A2D7_9CLOTHDIGdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16435PE=4SV=1	REV__tr|A0A7D7A2D7|A0A7D7A2D7_9CLOTHDIGdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16435PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	458.7895202636719	2	458.789318	915.564084	0.88951	0.0004081	-2.5684	-0.0011783	-1.6789	-0.00077024	458.78803113003795	151.48	0.73438	151.48	151.15	151.88	0					32	14	4	0	0	0	0.73938	1	17750	17750		31.955	2.8053	1	203530	+		28952	32533	23747	23774	32206	32206					0.10292412734145273
LELLLLPLSLL	11	Unmodified	_LELLLLPLSLL_					0	0	0		ENSG00000117091|ENST00000368046|CD48;nc|ENSG00000117091|P09326-2|CD48	ENSG00000117091|ENST00000368046|CD48	ENSG00000117091|ENST00000368046|CD48	MULTI-SECPEP	OvCa9_classI_Rep2	2	412.92669677734375	3	412.944097	1235.81046	-0.25819	-0.00010662	1.4316	0.00059119	1.1734	0.00048457	412.94493327986896	54.861	0.55025	52.047	51.822	52.372	-2.8139					14	10	2	0	0	0	0.025378	1	3772	3772		36.318	7.1476	1	18188			28953	3233	23748	23775	32207	32207					0.20198907513190534
LELLMPLL	8	Unmodified	_LELLMPLL_					0	0	0			REV__ENSG00000180043|ENST00000424985|GARIN5B	REV__ENSG00000180043|ENST00000424985|GARIN5B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.2900390625	2	471.29064	940.566726	-0.00091659	-4.3198E-07	3.0676	0.0014457	3.0666	0.0014453	471.2918997773647	99.471	0.77046	97.146	96.847	97.617	-2.3253					19	14	2	0	0	0	0.028476	1	8913	8913		21.702	4.3374	1	13273	+		28954	22154	23749	23776	32208	32208					0.09406544867454159
LELLMPLLI	9	Unmodified	_LELLMPLLI_					0	0	0			REV__ENSG00000180043|ENST00000424985|GARIN5B	REV__ENSG00000180043|ENST00000424985|GARIN5B	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.833251953125	2	527.832672	1053.65079	-0.87506	-0.00046189	3.6931	0.0019493	2.818	0.0014874	527.8347953558856	105.6	1.5727	103.58	103.25	104.82	-2.0161					56	30	3	0	0	0	0.098892	1	9604	9604		97.473	8.8298	1	303840	+		28955	22154	23750	23777	32209	32209					0.12611075964355223
LELLPPSSVI	10	Unmodified	_LELLPPSSVI_					0	0	0		ENST00000305108.8_1_12:673754-673844:-|nuORF	ENST00000305108.8_1_12:673754-673844:-|nuORF	ENST00000305108.8_1_12:673754-673844:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.781494140625	2	534.320983	1066.62741	2.316	0.0012375	0.25386	0.00013564	2.5699	0.0013731	534.3209492059914	80.117	0.78848	80.117	79.783	80.571	0					27	18	2	0	0	0	0.026956	1	8210	8210		42.396	11.892	1	373270			28956	10232	23751	23778	32210	32210					0.09676353451391151
LELLVTGLL	9	Unmodified	_LELLVTGLL_					0	0	0		nc|ENSG00000147255|Q8N6C5-2|IGSF1;chrX:131369052-131389017|295|10.98|0.36|4.93|-|ENST00000370904|IGSF1,IGSF1;ENSG00000147255|ENST00000361420|IGSF1;nc|ENSG00000147255|Q8N6C5-4|IGSF1	nc|ENSG00000147255|Q8N6C5-2|IGSF1	nc|ENSG00000147255|Q8N6C5-2|IGSF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.2841796875	2	485.812793	969.611034	2.5135	0.0012211	0.91925	0.00044658	3.4328	0.0016677	485.8130772348977	75.702	0.59233	75.702	75.523	76.115	0					28	14	3	0	0	0	0.027462	1	7544	7544		16.473	0	1	1478400			28957	565	23752	23779	32211	32211					0.12501272285282994
LELLYLVKA	9	Unmodified	_LELLYLVKA_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	OvCa9_classI_Rep2	2	531.7819213867188	2	531.333893	1060.65323	-1.5191	-0.00080713	-1.5451	-0.00082095	-3.0641	-0.0016281	531.3329780758015	47.921	0.99283	45.211	44.737	45.729	-2.7097					52	19	3	0	0	0	0.027455	1	2925	2925		19.997	0	1	124850	+		28958	18516	23753	23780	32212	32212					0.12533247693681915
LELMPLLF	8	Unmodified	_LELMPLLF_					0	0	0			REV__nc|ENSG00000096063|Q96SB4-4|SRPK1	REV__nc|ENSG00000096063|Q96SB4-4|SRPK1	MULTI-MSMS	OvCa9_classI_Rep2	2	488.2832946777344	2	488.282815	974.551076	-0.60534	-0.00029558	3.5172	0.0017174	2.9118	0.0014218	488.2844519822403	100.12	1.1905	99.289	98.964	100.15	-0.83051					71	23	4	0	0	0	0.65582	1	9154	9154		52.299	2.8576	1	404010	+		28959	17301	23754	23781	32213	32213					0.06278258350403121
LELMQRIEL	9	Oxidation (M)	_LELM(Oxidation (M))QRIEL_		LELM(1)QRIEL		LELM(120)QRIEL	0	0	1		nc|ENSG00000144045|Q8TE96-2|DQX1;ENSG00000144045|ENST00000404568|DQX1	nc|ENSG00000144045|Q8TE96-2|DQX1	nc|ENSG00000144045|Q8TE96-2|DQX1	MULTI-MSMS	OvCa99_classI_Rep5	1	580.8262329101562	2	580.820824	1159.62709	0.92659	0.00053818	0.85609	0.00049723	1.7827	0.0010354	580.8212903593477	79.114	1.4833	79.114	78.83	80.314	0					66	36	2	0	0	0	0.047062	1	8039	8039		120.62	17.848	1	9109200			28960	5126	23755	23782	32214	32214		166			0.053666104598733
LELNEKIN	8	Unmodified	_LELNEKIN_					0	0	0		nc|ENSG00000186714|Q6ZRK6-2|CCDC73;ENSG00000186714|ENST00000335185|CCDC73	nc|ENSG00000186714|Q6ZRK6-2|CCDC73	nc|ENSG00000186714|Q6ZRK6-2|CCDC73	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.3136291503906	2	486.771657	971.528761	2.1268	0.0010353	4.0936	0.0019926	6.2204	0.0030279	486.7733864231295	107.47	0.49898	107.47	107.23	107.73	0					17	11	2	0	0	0	0.028476	1	12114	12114		76.774	0	1	276230			28961	8358	23756	23783	32215	32215					0.041857502063294305
LELNKLEVVKA	11	Unmodified	_LELNKLEVVKA_					0	0	0			REV__MECR|p.G108Qfs*55|1|0.04|ENSG00000116353|chr1:29216090-29216091|-/CTCCCATATGCAAACCCTCTGC|frameshift_variant	REV__MECR|p.G108Qfs*55|1|0.04|ENSG00000116353|chr1:29216090-29216091|-/CTCCCATATGCAAACCCTCTGC|frameshift_variant	MSMS	OvCa9_classI_Rep4_	4	628.3829345703125	2	628.384645	1254.75474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	150.4	1	148.97	148.47	149.47	-1.4344								0	0	0	0.19474	1	14856	14856		22.58	3.4761	1		+		28962	18301	23757	23784	32216	32216					0.13755074325536043
LELNWENIL	9	Unmodified	_LELNWENIL_					0	0	0			REV__ENSG00000198088|ENST00000372466|NUP62CL	REV__ENSG00000198088|ENST00000372466|NUP62CL	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.8311767578125	2	572.305864	1142.59717	-0.091113	-5.2144E-05	-0.80417	-0.00046023	-0.89528	-0.00051238	572.3051718781668	56.987	0.56276	56.987	56.833	57.396	0					32	12	3	0	0	0	0.027093	1	4786	4786		84.916	0	1	1239800	+		28963	22985	23758	23785	32217	32217					0.031579947861928304
LELPGSSQGVG	11	Unmodified	_LELPGSSQGVG_					0	0	0		ENST00000421966.1_1_2:103347496-103353100:-|nuORF	ENST00000421966.1_1_2:103347496-103353100:-|nuORF	ENST00000421966.1_1_2:103347496-103353100:-|nuORF	MSMS	OvCa99_classI_Rep5	1	522.2733764648438	2	522.272021	1042.52949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.59	1	118.59	118.09	119.09	0								0	0	0	0.17657	1	13599	13599		49.536	1.6204	1				28964	11689	23759	23786	32218	32218					0.009925448553985916
LELPKLLI	8	Unmodified	_LELPKLLI_					0	0	0		nc|ENSG00000134160|Q7Z4N2-5|TRPM1;nc|ENSG00000134160|Q7Z4N2-2|TRPM1;nc|ENSG00000134160|Q7Z4N2-3|TRPM1;nc|ENSG00000134160|Q7Z4N2|TRPM1;ENSG00000134160|ENST00000256552|TRPM1;nc|ENSG00000083067|Q9HCF6-4|TRPM3;nc|ENSG00000083067|Q9HCF6|TRPM3;nc|ENSG00000083067|Q9HCF6-7|TRPM3;ENSG00000083067|ENST00000677713|TRPM3;nc|ENSG00000083067|Q9HCF6-6|TRPM3;nc|ENSG00000083067|Q9HCF6-5|TRPM3;nc|ENSG00000083067|Q9HCF6-2|TRPM3;ENST00000354500.6_1_9:73442757-73477826:-|nuORF;nc|ENSG00000083067|Q9HCF6-8|TRPM3;TRPM3|p.N1618Efs*41|1|0.11|ENSG00000083067|chr9:70536225-70536226|-/C|frameshift_variant;nc|ENSG00000083067|Q9HCF6-12|TRPM3;TRPM3|p.R1586Qfs*5|1|0.16|ENSG00000083067|chr9:70536320-70536320|C/-|frameshift_variant;nc|ENSG00000083067|Q9HCF6-10|TRPM3;TRPM3|p.E809Rfs*47|1|0.06|ENSG00000083067|chr9:70615973-70615973|C/-|frameshift_variant;nc|ENSG00000134160|Q7Z4N2-4|TRPM1;nc|ENSG00000083067|Q9HCF6-11|TRPM3	nc|ENSG00000134160|Q7Z4N2-5|TRPM1	nc|ENSG00000134160|Q7Z4N2-5|TRPM1	MULTI-MSMS	OvCa9_classI_Rep4_	4	469.8171081542969	2	469.817879	937.621205	3.936	0.0018492	-4.0113	-0.0018846	-0.075315	-3.5384E-05	469.8158656437192	131	2.0057	129.52	129.26	131.26	-1.4779					80	40	3	0	0	0	0.65062	1	12615	12615		53.351	2.016	1	330890			28965	4264	23760	23787	32219	32219					0.14989880010523393
LELPTGDPQ	9	Unmodified	_LELPTGDPQ_					0	0	0		nc|ENSG00000105364|Q9BYD3-2|MRPL4;ENSG00000105364|ENST00000253099|MRPL4	nc|ENSG00000105364|Q9BYD3-2|MRPL4	nc|ENSG00000105364|Q9BYD3-2|MRPL4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.27264404296875	2	485.248015	968.481476	-0.058595	-2.8433E-05	-3.4064	-0.0016529	-3.465	-0.0016814	485.2464490921438	62.091	0.29202	58.633	58.523	58.815	-3.4577					9	5	2	0	0	0	0.027411	1	4299	4299		58.23	12.258	1	14339			28966	2446	23761	23788	32220	32220					-0.004025290646609392
LELQAIVEP	9	Unmodified	_LELQAIVEP_					0	0	0			REV__ENST00000482436.1_1_7:55980329-55991886:+|nuORF	REV__ENST00000482436.1_1_7:55980329-55991886:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.83465576171875	2	506.289682	1010.56481	-0.91186	-0.00046166	2.3185	0.0011738	1.4067	0.00071219	506.2909853677575	89.04	0.68719	86.438	86.136	86.823	-2.6027					29	13	3	0	0	0	0.027453	1	7618	7618		45.972	3.5761	1	68372	+		28967	22068	23762	23789	32221	32221					0.059952073831937014
LELQAIVEP	9	Unmodified	_LELQAIVEP_					0	0	0			REV__ENST00000482436.1_1_7:55980329-55991886:+|nuORF	REV__ENST00000482436.1_1_7:55980329-55991886:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	506.289682	1010.56481	-0.91538	-0.00046345	2.3555	0.0011926	1.4402	0.00072914	506.2905490932836	88.631	0.74087	86.5	86.009	86.75	-2.1309	0.031056	2.2295E-05	NaN	45.972	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58390	+		28968	22068	23762	23789							0.059952073831937014
LELQLGQET	9	Unmodified	_LELQLGQET_					0	0	0		nc|ENSG00000053702|Q9BQI9-2|NRIP2;ENSG00000053702|ENST00000337508|NRIP2	nc|ENSG00000053702|Q9BQI9-2|NRIP2	nc|ENSG00000053702|Q9BQI9-2|NRIP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.2807006835938	2	515.774396	1029.53424	-0.31146	-0.00016064	-2.6699	-0.0013771	-2.9813	-0.0015377	515.7712245140599	68.855	1.2268	65.365	64.965	66.192	-3.4902					34	24	2	0	0	0	0.027462	1	5086	5086		24.519	0	1	274590			28969	1199	23763	23790	32222	32222					0.02065428998139396
LELRATWL	8	Unmodified	_LELRATWL_					0	0	0			REV__ENST00000553181.5_1_2:10590609-10590744:+|nuORF	REV__ENST00000553181.5_1_2:10590609-10590744:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	501.2895812988281	2	501.292559	1000.57057	-0.80197	-0.00040202	-3.5119	-0.0017605	-4.3139	-0.0021625	501.2906816095173	135.63	4.8104	135.4	133.71	138.52	-0.22697					221	98	3	0	0	0	0.75723	1	13447	13447		23.042	1.0826	1	70595	+		28970	27507	23764	23791	32223	32223					0.07030350685522535
LELRLARFEQL	11	Unmodified	_LELRLARFEQL_					0	0	0		ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7687207-7690948:-|nuORF	ENSG00000076924|ENST00000358368|XAB2	ENSG00000076924|ENST00000358368|XAB2	MULTI-MSMS	OvCa99_classI_Rep5	1	463.27215576171875	3	463.273388	1386.79833	-0.20878	-9.6721E-05	-2.8031	-0.0012986	-3.0119	-0.0013953	463.2720538204352	23.22	0.40384	23.22	23.093	23.497	0					10	7	2	0	0	0	0.71048	1	308	308		26.063	6.0329	1	55776			28971	1559	23765	23792	32224	32224					0.12040683822715437
LELRNRSP	8	Unmodified	_LELRNRSP_					0	0	0		nc|ENSG00000143401|Q9BTT0-2|ANP32E;ENSG00000143401|ENST00000583931|ANP32E	nc|ENSG00000143401|Q9BTT0-2|ANP32E	nc|ENSG00000143401|Q9BTT0-2|ANP32E	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.3105773925781	2	492.78289	983.551228	-0.63321	-0.00031204	-4.0115	-0.0019768	-4.6447	-0.0022888	492.78091717273225	101.67	1.435	100.9	100.52	101.95	-0.76401					77	28	4	0	0	0	0.028476	1	9418	9418		76.774	15.802	1	255410			28972	5051	23766	23793	32225	32225					0.05879394394617066
LELRTYRDLQ	10	Unmodified	_LELRTYRDLQ_					0	0	0		ENST00000590410.1_1_19:9967903-10046991:-|nuORF;ENSG00000105088|ENST00000264833|OLFM2	ENST00000590410.1_1_19:9967903-10046991:-|nuORF	ENST00000590410.1_1_19:9967903-10046991:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	435.7750549316406	3	436.241976	1305.7041	-0.2563	-0.00011181	-1.9419	-0.00084714	-2.1982	-0.00095895	436.2411280430257	32.892	0.9462	30.182	29.976	30.922	-2.7097					38	18	3	0	0	0	0.027325	1	1123	1123		16.007	0	1	63748			28973	2421	23767	23794	32226	32226					0.06347545000562604
LELSDYPWF	9	Unmodified	_LELSDYPWF_					0	0	0		ENSG00000160999|ENST00000444095|SH2B2;nc|ENSG00000160999|O14492-2|SH2B2	ENSG00000160999|ENST00000444095|SH2B2	ENSG00000160999|ENST00000444095|SH2B2	MULTI-MSMS	OvCa99_classI_Rep5	1	585.2814331054688	2	585.279315	1168.54408	0.43576	0.00025504	-1.024	-0.00059931	-0.58821	-0.00034427	585.2779532487018	140.78	0.8136	140.78	140.17	140.98	0					30	16	3	0	0	0	0.52083	1	16438	16438		40.573	4.9543	1	70689			28974	6113	23768	23795	32227	32227					-0.033453829964855686
LELSGVKLLK	10	Unmodified	_LELSGVKLLK_					0	0	0			REV__tr|A0A7D6W2L8|A0A7D6W2L8_9CLOTDUF262domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06605PE=4SV=1	REV__tr|A0A7D6W2L8|A0A7D6W2L8_9CLOTDUF262domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06605PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.76708984375	2	550.357899	1098.70125	-0.2742	-0.00015091	-2.9334	-0.0016144	-3.2076	-0.0017653	550.356531824568	71.148	0.19899	71.148	71.031	71.23	0					6	4	2	0	0	0	0.027028	1	6864	6864		39.253	5.7372	1	167140	+		28975	31901	23769	23796	32228	32228					0.15584321613710017
LELSLQSGNS	10	Unmodified	_LELSLQSGNS_					0	0	0		nc|ENSG00000092853|Q9HAW4-2|CLSPN;nc|ENSG00000092853|Q9HAW4-3|CLSPN;ENSG00000092853|ENST00000318121|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	nc|ENSG00000092853|Q9HAW4-2|CLSPN	MULTI-SECPEP	OvCa9_classI_Rep3	3	523.8087768554688	2	524.269478	1046.5244	-0.23041	-0.0001208	-0.87826	-0.00046045	-1.1087	-0.00058124	524.2690917814932	79.439	1.0964	77.099	76.417	77.513	-2.3399					46	21	3	0	0	0	0.026931	1	4245	4245		23.523	7.0495	1	86486			28976	1902	23770	23797	32229	32229					0.0030024099276033667
LELSLRVFN	9	Unmodified	_LELSLRVFN_					0	0	0		ENST00000493335.5_1_22:31492537-31494796:+|nuORF;ENST00000489337.5_1_22:31484532-31494796:+|nuORF	ENST00000493335.5_1_22:31492537-31494796:+|nuORF	ENST00000493335.5_1_22:31492537-31494796:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	545.8176879882812	2	545.816399	1089.61824	-0.037405	-2.0416E-05	-0.34243	-0.0001869	-0.37983	-0.00020732	545.8159735530782	57.111	0.64622	57.111	56.875	57.522	0					28	14	3	0	0	0	0.37135	1	4781	4781		54.776	1.8396	1	1653300			28977	12674	23771	23798	32230	32230					0.07702004885709357
LELSLRVFN	9	Unmodified	_LELSLRVFN_					0	0	0		ENST00000493335.5_1_22:31492537-31494796:+|nuORF;ENST00000489337.5_1_22:31484532-31494796:+|nuORF	ENST00000493335.5_1_22:31492537-31494796:+|nuORF	ENST00000493335.5_1_22:31492537-31494796:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	545.816399	1089.61824	-0.66095	-0.00036076	-2.1705	-0.0011847	-2.8315	-0.0015455	545.814282019622	59.835	1.0945	57.065	56.725	57.819	-2.7702	-0.030944	-0.0017995	NaN	54.776	32	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61259			28978	12674	23771	23798							0.07702004885709357
LELSLRVFN	9	Unmodified	_LELSLRVFN_					0	0	0		ENST00000493335.5_1_22:31492537-31494796:+|nuORF;ENST00000489337.5_1_22:31484532-31494796:+|nuORF	ENST00000493335.5_1_22:31492537-31494796:+|nuORF	ENST00000493335.5_1_22:31492537-31494796:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	545.816399	1089.61824	-0.1223	-6.6752E-05	-1.6832	-0.0009187	-1.8055	-0.00098545	545.8150844734943	60.541	1.143	57.111	56.848	57.991	-3.43	0.015775	-0.0012674	NaN	54.776	38	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188560			28979	12674	23771	23798							0.07702004885709357
LELSNPLKL	9	Unmodified	_LELSNPLKL_					0	0	0		ENST00000445586.1_1_X:48365413-48367157:-|nuORF	ENST00000445586.1_1_X:48365413-48367157:-|nuORF	ENST00000445586.1_1_X:48365413-48367157:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	513.8140258789062	2	513.813325	1025.6121	-0.52087	-0.00026763	0.12081	6.2073E-05	-0.40006	-0.00020556	513.8133179520387	96.39	1.8725	94.561	93.78	95.652	-1.8286					114	36	4	0	0	0	0.074342	1	6354	6354		104.75	3.1458	1	1310500			28980	11982	23772	23799	32231	32231					0.10031486654179389
LELSVVLELL	10	Unmodified	_LELSVVLELL_					0	0	0		ENST00000438607.2_1_3:48485383-48485419:+|nuORF	ENST00000438607.2_1_3:48485383-48485419:+|nuORF	ENST00000438607.2_1_3:48485383-48485419:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.8055419921875	2	564.34974	1126.68493	0.081948	4.6248E-05	-2.4586	-0.0013875	-2.3766	-0.0013412	564.3482991430882	60.127	0.55319	60.127	59.839	60.392	0					28	13	3	0	0	0	0.026956	1	5227	5227		14.137	3.0404	1	535210			28981	11902	23773	23800	32232	32232					0.12665195656950345
LELTIEFC	8	Unmodified	_LELTIEFC_					0	0	0			REV__CPD-NSRP1|1|fusion;REV__ENST00000546912.1_1_12:69260670-69264157:-|nuORF	REV__CPD-NSRP1|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.7536926269531	2	484.243886	966.47322	0.43795	0.00021207	-4.303	-0.0020837	-3.8651	-0.0018716	484.2416322978096	45.855	0.61868	45.855	45.624	46.242	0					21	13	2	0	0	0	0.028476	1	3223	3223		35.201	9.7505	1	480440	+		28982	16231;19310	23774	23801	32233	32233					-0.011357993056321902
LELTLPKVT	9	Unmodified	_LELTLPKVT_					0	0	0			REV__ENST00000574576.2_1_16:67968465-67968768:-|nuORF	REV__ENST00000574576.2_1_16:67968465-67968768:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.3149719238281	2	507.3157	1012.61685	-1.2635	-0.00064101	0.79123	0.00040141	-0.4723	-0.0002396	507.31593965363254	118.1	1.9854	116.76	116.42	118.4	-1.3444					95	37	4	0	0	0	0.40667	1	11079	11079		51.335	6.9583	1	576430	+		28983	23206	23775	23802	32234	32234					0.11104370796954299
LELTQRPK	8	Unmodified	_LELTQRPK_					0	0	0		ENST00000523202.5_1_8:28242642-28242861:-|nuORF	ENST00000523202.5_1_8:28242642-28242861:-|nuORF	ENST00000523202.5_1_8:28242642-28242861:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.3105773925781	2	492.795466	983.57638	-0.54772	-0.00026991	-2.036	-0.0010033	-2.5837	-0.0012732	492.7942014219035	102.13	0.49503	101.41	101.26	101.75	-0.71632					17	9	2	0	0	0	0.028476	1	9418	9418		68.787	4.5796	1	21192			28984	13148	23776	23803	32235	32235					0.08393449197183145
LELTQRPK	8	Unmodified	_LELTQRPK_					0	0	0		ENST00000523202.5_1_8:28242642-28242861:-|nuORF	ENST00000523202.5_1_8:28242642-28242861:-|nuORF	ENST00000523202.5_1_8:28242642-28242861:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	492.795466	983.57638	-0.52471	-0.00025857	-1.3002	-0.00064073	-1.8249	-0.0008993	492.7947400885078	102.89	0.57385	101.37	101.05	101.62	-1.5211	-0.020092	0.00048557	NaN	68.787	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37435			28985	13148	23776	23803							0.08393449197183145
LELTQRPK	8	Unmodified	_LELTQRPK_					0	0	0		ENST00000523202.5_1_8:28242642-28242861:-|nuORF	ENST00000523202.5_1_8:28242642-28242861:-|nuORF	ENST00000523202.5_1_8:28242642-28242861:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	492.795466	983.57638	-0.17721	-8.7327E-05	-2.0815	-0.0010257	-2.2587	-0.0011131	492.7942704980301	103.51	0.62558	101.39	101.12	101.75	-2.1192	-0.001983	-0.00028445	NaN	68.787	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28200			28986	13148	23776	23803							0.08393449197183145
LELVLRPLM	9	Unmodified	_LELVLRPLM_					0	0	0			REV__ENST00000561704.1_1_16:66914465-66918177:+|nuORF	REV__ENST00000561704.1_1_16:66914465-66918177:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.8334350585938	2	542.33337	1082.65219	-1.3759	-0.00074621	-1.8165	-0.00098515	-3.1924	-0.0017314	542.3322005835712	124.52	2.8239	123.13	121.83	124.65	-1.3908					111	55	3	0	0	0	0.61208	1	11745	11745		30.504	0	1	117900	+		28987	27638	23777	23804	32236	32236					0.11416710053094903
LELVQEPAR	9	Unmodified	_LELVQEPAR_					0	0	0		ENST00000349792.9_1_1:151171277-151171331:+|nuORF	ENST00000349792.9_1_1:151171277-151171331:+|nuORF	ENST00000349792.9_1_1:151171277-151171331:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.322998046875	2	527.798206	1053.58186	3.109	0.0016409	-0.20797	-0.00010976	2.901	0.0015311	527.7980461046468	131.39	0.44983	129.92	129.79	130.24	-1.4779					14	9	2	0	0	0	0.027462	1	12653	12653		47.657	1.7054	1	18638			28988	10649	23778	23805	32237	32237					0.057211279889770594
LELVQEPAR	9	Unmodified	_LELVQEPAR_					0	0	0		ENST00000349792.9_1_1:151171277-151171331:+|nuORF	ENST00000349792.9_1_1:151171277-151171331:+|nuORF	ENST00000349792.9_1_1:151171277-151171331:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	527.798206	1053.58186	-0.23594	-0.00012453	1.576	0.00083183	1.3401	0.0007073	527.7990195558398	131.17	0.3334	130.05	129.86	130.19	-1.1249	0.065237	0.0014961	NaN	47.657	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12536			28989	10649	23778	23805							0.057211279889770594
LELVRALIF	9	Unmodified	_LELVRALIF_					0	0	0			REV__ENST00000491192.1_1_9:75783915-75783975:+|nuORF	REV__ENST00000491192.1_1_9:75783915-75783975:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.8048706054688	2	537.33951	1072.66447	-1.0317	-0.0005544	0.13966	7.5044E-05	-0.89209	-0.00047936	537.33961121212	73.441	1.2033	71.041	70.534	71.738	-2.3999					43	18	3	0	0	0	0.027453	1	6053	6053		54.776	3.4409	1	117520	+		28990	26668	23779	23806	32238	32238					0.13104069787800654
LELVRALIF	9	Unmodified	_LELVRALIF_					0	0	0			REV__ENST00000491192.1_1_9:75783915-75783975:+|nuORF	REV__ENST00000491192.1_1_9:75783915-75783975:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	537.804443359375	2	537.33951	1072.66447	0.76623	0.00041173	-1.5116	-0.00081225	-0.74537	-0.00040052	537.3385874812	74.473	1.0275	72.062	71.747	72.774	-2.4106					42	20	3	0	0	0	0.027462	1	3662	3662		27.882	0	1	65288	+		28991	26668	23779	23806	32239	32239					0.13104069787800654
LELVVVVNH	9	Unmodified	_LELVVVVNH_					0	0	0		ENSG00000139985|ENST00000603540|ADAM21;ENST00000529267.2_1_14:70712472-70713909:-|nuORF	ENSG00000139985|ENST00000603540|ADAM21	ENSG00000139985|ENST00000603540|ADAM21	MULTI-MSMS	OvCa99_classI_Rep5	1	511.3035888671875	2	511.305667	1020.59678	-0.36973	-0.00018904	-2.7187	-0.0013901	-3.0884	-0.0015791	511.3041569080205	35.958	0.78064	35.958	35.707	36.487	0					40	16	4	0	0	0	0.38529	1	1853	1853		53.351	9.2347	1	1106700			28992	4816	23780	23807	32240	32240					0.08730619856999056
LELYWKHAPKT	11	Unmodified	_LELYWKHAPKT_					0	0	0		ENSG00000137168|ENST00000373699|PPIL1;PPIL1|p.G104Pfs*12|1|0.09|ENSG00000137168|chr6:36856004-36856005|-/GG|frameshift_variant;PPIL1|p.A103Vfs*28|1|0.08|ENSG00000137168|chr6:36856006-36856007|-/TGCACAGAGTTAAGAGGGCTGA|frameshift_variant	ENSG00000137168|ENST00000373699|PPIL1	ENSG00000137168|ENST00000373699|PPIL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.2458801269531	3	462.590717	1384.75032	-0.88053	-0.00040732	-3.6035	-0.0016669	-4.484	-0.0020743	462.58902724814766	63.463	0.81701	59.988	59.82	60.637	-3.475					25	16	2	0	0	0	0.025864	1	4521	4521		12.433	0	1	106170			28993	4563	23781	23808	32241	32241					0.07333609902639182
LEMDYEEADN	10	Unmodified	_LEMDYEEADN_					0	0	0		SF3B3-DDX19B|3|fusion;SF3B3-DDX19B|2|fusion;nc|ENSG00000189091|Q15393-2|SF3B3;ENSG00000189091|ENST00000302516|SF3B3;SF3B3|p.K976Dfs*14|1|0.12|ENSG00000189091|chr16:70567509-70567510|-/GACTATTTTACCATAATTTTTA|frameshift_variant;SF3B3-DDX19B|4|fusion;SF3B3-DDX19B|1|fusion	SF3B3-DDX19B|3|fusion;ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OvCa9_classI_Rep3	3	614.7394409179688	2	614.737351	1227.46015	1.6599	0.0010204	0.23956	0.00014727	1.8994	0.0011676	614.7381120866673	119.13	2.1232	118.1	117.73	119.86	-1.0271					132	42	5	0	0	0	0.58067	1	9022	9022		44.377	1.981	1	919520			28994	8533;32815	23782	23809	32242	32242					-0.1444832694633078
LEMLLQRAI	9	Unmodified	_LEMLLQRAI_					0	0	0			REV__nc|ENSG00000145725|O43314-2|PPIP5K2	REV__nc|ENSG00000145725|O43314-2|PPIP5K2	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.853271484375	2	543.820627	1085.6267	0.017794	9.6767E-06	3.2899	0.0017891	3.3077	0.0017988	543.8222783134671	31.911	0.89448	31.911	31.708	32.602	0					30	17	3	0	0	0	0.027418	1	1403	1403		68.787	4.5796	1	284250	+		28995	19979	23783	23810	32243	32243					0.08731235530694903
LEMLVLEQF	9	Unmodified	_LEMLVLEQF_					0	0	0		ENST00000594468.1_1_19:58988585-58988960:+|nuORF;ENST00000391694.4_1_19:58988585-58991546:+|nuORF;nc|ENSG00000083838|Q9NWS9-2|ZNF446;ENSG00000083838|ENST00000594369|ZNF446;nc|ENSG00000186376|P51815-2|ZNF75D;ENSG00000186376|ENST00000370766|ZNF75D	ENST00000594468.1_1_19:58988585-58988960:+|nuORF;nc|ENSG00000186376|P51815-2|ZNF75D	ENST00000594468.1_1_19:58988585-58988960:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.7670288085938	2	561.299193	1120.58383	0.24766	0.00013901	2.5176	0.0014131	2.7652	0.0015521	561.8021070424445	60.083	0.19625	60.083	59.957	60.153	0					7	4	2	0	0	0	0.027462	1	5219	5219		20.947	0	1	231980			28996	1704;8333	23784	23811	32244	32244					0.028364206825926885
LEMMYVWN	8	Unmodified	_LEMMYVWN_					0	0	0		nc|ENSG00000155158|Q5VTQ0-5|TTC39B;nc|ENSG00000155158|Q5VTQ0-2|TTC39B;nc|ENSG00000155158|Q5VTQ0-6|TTC39B;ENSG00000155158|ENST00000512701|TTC39B;nc|ENSG00000155158|Q5VTQ0-3|TTC39B;nc|ENSG00000155158|Q5VTQ0-4|TTC39B;nc|ENSG00000155158|Q5VTQ0|TTC39B;nc|ENSG00000155158|Q5VTQ0-7|TTC39B;ENST00000380853.1_1_9:15172019-15185442:-|nuORF	nc|ENSG00000155158|Q5VTQ0-5|TTC39B	nc|ENSG00000155158|Q5VTQ0-5|TTC39B	MULTI-SECPEP	OvCa9_classI_Rep3	3	543.3231201171875	2	543.243363	1084.47217	1.3493	0.00073297	1.0713	0.00058197	2.4205	0.0013149	543.2438986601908	120.49	1.4708	119.46	119.12	120.59	-1.0271					51	28	3	0	0	0	0.028476	1	9161	9161		55.504	0	1	61691			28997	5771	23785	23812	32245	32245					-0.06668336946177078
LEMPRQPD	8	Unmodified	_LEMPRQPD_					0	0	0		ENSG00000182150|ENST00000653738|ERCC6L2;ENST00000479391.6_3_9:98729892-98767017:+|nuORF	ENSG00000182150|ENST00000653738|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.32373046875	2	493.242209	984.469866	-0.75219	-0.00037101	0.53922	0.00026597	-0.21297	-0.00010504	493.24265226445715	115.94	0.69051	114.9	114.6	115.29	-1.0414					17	13	2	0	0	0	0.028476	1	8627	8627		40.573	0	1	18395			28998	7971	23786	23813	32246	32246					-0.022990493596466877
LEMQRARNEVL	11	Unmodified	_LEMQRARNEVL_					0	0	0			REV__nc|ENSG00000168556|Q9H160-2|ING2	REV__nc|ENSG00000168556|Q9H160-2|ING2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	453.28314208984375	3	453.578483	1357.71362	-0.16846	-7.6411E-05	2.2383	0.0010152	2.0698	0.00093881	453.579497927739	80.885	0.58805	78.175	77.906	78.494	-2.7106					13	11	2	0	0	0	0.025668	1	6634	6634		28.577	12.047	1	15020	+		28999	21385	23787	23814	32247	32247					0.04906990014433177
LEMRVNKNQ	9	Unmodified	_LEMRVNKNQ_					0	0	0			REV__ROR2|p.L565Pfs*27|1|0.07|ENSG00000169071|chr9:91724800-91724801|-/ACATGGGGGTTGGAGGGAACCTGGCAGGGTATGTCCG|frameshift_variant	REV__ROR2|p.L565Pfs*27|1|0.07|ENSG00000169071|chr9:91724800-91724801|-/ACATGGGGGTTGGAGGGAACCTGGCAGGGTATGTCCG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	566.2973022460938	2	566.30059	1130.58663	-0.91483	-0.00051807	-4.1671	-0.0023598	-5.0819	-0.0028779	566.2978698656331	100.56	0.98025	98.952	98.518	99.498	-1.6053					67	19	5	0	0	0	0.1804	1	6816	6816		79.713	7.4694	1	1325600	+		29000	21429	23788	23815	32248	32248					0.026556888601135142
LEMSEAHSAL	10	Unmodified	_LEMSEAHSAL_					0	0	0		ENST00000401651.5_1_7:22766799-22768369:+|nuORF;ENST00000404625.5_1_7:22766799-22767201:+|nuORF	ENST00000401651.5_1_7:22766799-22768369:+|nuORF	ENST00000401651.5_1_7:22766799-22768369:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8128662109375	2	544.258056	1086.50156	-1.2969	-0.00070583	-0.7878	-0.00042877	-2.0847	-0.0011346	544.257494710074	70.054	0.57169	70.054	69.756	70.328	0					24	13	3	0	0	0	0.027005	1	6706	6706		71.296	38.483	1	623180			29001	11419	23789	23816	32249	32249					-0.038231013963468286
LEMVSMQRW	9	Unmodified	_LEMVSMQRW_					0	0	0		ENST00000487509.6_1_16:31197338-31197431:+|nuORF	ENST00000487509.6_1_16:31197338-31197431:+|nuORF	ENST00000487509.6_1_16:31197338-31197431:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.8095092773438	2	590.286094	1178.55763	-0.20825	-0.00012293	-2.4239	-0.0014308	-2.6321	-0.0015537	590.2845600061357	71.361	0.71407	71.361	70.954	71.668	0					20	17	2	0	0	0	0.02741	1	6914	6914		51.335	0	1	585360			29002	12646	23790	23817	32250	32250					-0.02450171760528974
LENAQQFY	8	Unmodified	_LENAQQFY_					0	0	0			REV__nc|ENSG00000023228|P28331-5|NDUFS1	REV__nc|ENSG00000023228|P28331-5|NDUFS1	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.26727294921875	2	506.740357	1011.46616	-1.1322	-0.00057374	-2.69	-0.0013632	-3.8223	-0.0019369	506.738915178006	88.024	0.61783	85.893	85.545	86.163	-2.1309					19	11	2	0	0	0	0.028476	1	5293	5293		17.365	0	1	15550	+		29003	28709	23791	23818	32251	32251					-0.03911395861860001
LENDFLEIT	9	Unmodified	_LENDFLEIT_					0	0	0		ENSG00000196345|ENST00000426540|ZKSCAN7	ENSG00000196345|ENST00000426540|ZKSCAN7	ENSG00000196345|ENST00000426540|ZKSCAN7	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.8006591796875	2	547.274229	1092.53391	-1.2732	-0.00069681	-2.3461	-0.001284	-3.6194	-0.0019808	547.7728728082651	34.563	0.281	34.563	34.351	34.632	0					8	5	2	0	0	0	0.027462	1	1662	1662		16.473	0	1	30707			29004	8593	23792	23819	32252	32252					-0.008659907217179352
LENEEFPET	9	Unmodified	_LENEEFPET_					0	0	0		nc|ENSG00000124678|Q8WWU5-3|TCP11;nc|ENSG00000124678|Q8WWU5-2|TCP11;nc|ENSG00000124678|Q8WWU5-6|TCP11;nc|ENSG00000124678|Q8WWU5-4|TCP11;ENSG00000124678|ENST00000311875|TCP11;nc|ENSG00000124678|Q8WWU5-5|TCP11;nc|ENSG00000124678|Q8WWU5-7|TCP11	nc|ENSG00000124678|Q8WWU5-3|TCP11	nc|ENSG00000124678|Q8WWU5-3|TCP11	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.839599609375	2	554.245669	1106.47678	0.19817	0.00010983	-3.2641	-0.0018091	-3.066	-0.0016993	554.7446334763348	73.643	0.46742	73.643	73.44	73.907	0					19	11	3	0	0	0	0.027462	1	7271	7271		14.137	0	1	224730			29005	3670	23793	23820	32253	32253					-0.07219457998075995
LENEETQIN	9	Unmodified	_LENEETQIN_					0	0	0		ENSG00000140522|ENST00000268125|RLBP1	ENSG00000140522|ENST00000268125|RLBP1	ENSG00000140522|ENST00000268125|RLBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	545.2557983398438	2	545.256568	1088.49858	-0.16024	-8.7372E-05	-2.0167	-0.0010996	-2.1769	-0.001187	545.2553002473878	71.099	0.35235	71.099	70.915	71.267	0					20	8	3	0	0	0	0.44568	1	6858	6858		47.657	2.6351	1	2042900			29006	4854	23794	23821	32254	32254					-0.0421265324948763
LENEHTFH	8	Unmodified	_LENEHTFH_					0	0	0		nc|ENSG00000152990|Q8IWK6-3|ADGRA3;ENSG00000152990|ENST00000334304|ADGRA3	nc|ENSG00000152990|Q8IWK6-3|ADGRA3	nc|ENSG00000152990|Q8IWK6-3|ADGRA3	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.2518310546875	2	513.735606	1025.45666	0.95925	0.0004928	0.75127	0.00038595	1.7105	0.00087875	513.735883218978	154.7	0.46027	154.7	154.47	154.93	0					14	8	2	0	0	0	0.028476	1	18132	18132		52.299	20.344	1	24967			29007	5653	23795	23822	32255	32255					-0.05505164147393771
LENFLCNNL	9	Unmodified	_LENFLCNNL_					0	0	0		ENSG00000110448|ENST00000347785|CD5	ENSG00000110448|ENST00000347785|CD5	ENSG00000110448|ENST00000347785|CD5	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.2635498046875	2	540.263142	1078.51173	-0.3743	-0.00020222	1.3165	0.00071124	0.94217	0.00050902	540.2636864762645	142	0.99675	140.54	140.24	141.23	-1.4627					44	18	3	0	0	0	0.22621	1	13879	13879		71.877	9.7701	1	101160			29008	2779	23796	23823	32256	32256					-0.024384936711157934
LENFLDEIH	9	Unmodified	_LENFLDEIH_					0	0	0		nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.296142578125	2	565.279846	1128.54514	1.2518	0.00070762	1.2623	0.00071356	2.5141	0.0014212	565.2805658588805	61.385	0.71933	57.955	57.644	58.364	-3.43					25	14	2	0	0	0	0.027418	1	4173	4173		49.442	21.559	1	72422			29009	2253	23797	23824	32257	32257					-0.013991686275630855
LENFPIGHLK	10	Unmodified	_LENFPIGHLK_					0	0	0		nc|ENSG00000136869|O00206-2|TLR4;ENSG00000136869|ENST00000355622|TLR4;TLR4|p.Q578Rfs*3|1|0.03|ENSG00000136869|chr9:117713860-117713861|-/G|frameshift_variant	nc|ENSG00000136869|O00206-2|TLR4	nc|ENSG00000136869|O00206-2|TLR4	MULTI-MSMS	OvCa99_classI_Rep5	1	584.3276977539062	2	584.329673	1166.64479	1.5817	0.00092421	-1.1572	-0.0006762	0.42444	0.00024801	584.3290320063321	112.59	4.4882	112.59	111.56	116.05	0					226	99	6	0	0	0	0.45822	1	12782	12782		60.118	1.3363	1	109430000			29010	4525	23798	23825	32258	32258					0.06813693777030494
LENFPLCKEL	10	Unmodified	_LENFPLCKEL_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.M3578Ifs*3|1|0.03|ENSG00000048707|chr1:12369624-12369625|-/TATAT|frameshift_variant	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OvCa99_classI_Rep5	1	603.3175659179688	2	603.315374	1204.6162	1.3238	0.00079869	3.8037	0.0022948	5.1275	0.0030935	603.3174162006143	155.58	1.0198	155.58	155.22	156.24	0					40	19	3	0	0	0	0.6349	1	18224	18224		37.812	1.3648	1	132140			29011	1159	23799	23826	32259	32259					0.022072080856105458
LENGHHRTGR	10	Unmodified	_LENGHHRTGR_					0	0	0			REV__ENST00000375863.7_1_6:31650925-31651075:-|nuORF	REV__ENST00000375863.7_1_6:31650925-31651075:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	589.7720947265625	2	588.802677	1175.5908	-1.5282	-0.00089981	3.3935	0.0019981	1.8653	0.0010983	588.8044136142199	78.744	0.68996	76.391	76.149	76.839	-2.3527					25	13	3	0	0	0	0.027033	1	4183	4183		33.922	7.1255	1	21273	+		29012	25093	23800	23827	32260	32260					0.010029143980545996
LENGKEVL	8	Unmodified	_LENGKEVL_					0	0	0		ENSG00000165434|ENST00000298198|PGM2L1	ENSG00000165434|ENST00000298198|PGM2L1	ENSG00000165434|ENST00000298198|PGM2L1	MULTI-MSMS	OvCa99_classI_Rep5	1	451.2546691894531	2	451.2531	900.491647	-0.011141	-5.0276E-06	0.40672	0.00018353	0.39558	0.00017851	451.25311594045286	55.985	0.85896	55.985	55.764	56.623	0					39	20	4	0	0	0	0.35821	1	4616	4616		96.19	5.4138	1	1497100			29013	6561	23801	23828	32261	32261					0.03742078660570769
LENGTFTMLLI	11	Unmodified	_LENGTFTMLLI_					0	0	0		PREX2|p.I443Tfs*36|1|0.1|ENSG00000046889|chr8:68060768-68060768|T/-|frameshift_variant	PREX2|p.I443Tfs*36|1|0.1|ENSG00000046889|chr8:68060768-68060768|T/-|frameshift_variant	PREX2|p.I443Tfs*36|1|0.1|ENSG00000046889|chr8:68060768-68060768|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	626.3380126953125	2	626.336307	1250.65806	-0.68266	-0.00042757	3.7119	0.0023249	3.0292	0.0018973	626.338481713203	123.13	1.2816	122.91	122.51	123.79	-0.21803					72	25	4	0	0	0	0.66495	1	11944	11944		38.754	0.94209	1	275140			29014	15521	23802	23829	32262	32262					0.04275763774126062
LENHHATIP	9	Unmodified	_LENHHATIP_					0	0	0		nc|ENSG00000126822|A1L390-3|PLEKHG3;ENSG00000126822|ENST00000247226|PLEKHG3;ENST00000490180.2_1_14:65198440-65203695:+|nuORF	nc|ENSG00000126822|A1L390-3|PLEKHG3	nc|ENSG00000126822|A1L390-3|PLEKHG3	MULTI-MSMS	OvCa99_classI_Rep5	1	516.2713012695312	2	516.267073	1030.51959	1.9137	0.00098799	4.1344	0.0021344	6.0481	0.0031224	516.2691348984831	91.859	1.3477	91.859	91.415	92.762	0					73	31	3	0	0	0	0.21231	1	9900	9900		74.255	0.28031	1	3676700			29015	3804	23803	23830	32263	32263					0.005554016406676965
LENIFVLSV	9	Unmodified	_LENIFVLSV_					0	0	0		nc|ENSG00000168398|P30411-2|BDKRB2;ENSG00000168398|ENST00000554311|BDKRB2	nc|ENSG00000168398|P30411-2|BDKRB2	nc|ENSG00000168398|P30411-2|BDKRB2	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.769287109375	2	517.30005	1032.58555	-0.037279	-1.9285E-05	-1.0131	-0.00052409	-1.0504	-0.00054337	517.8027623066205	72.747	0.46569	72.747	72.412	72.877	0					14	11	2	0	0	0	0.027462	1	7063	7063		31.53	0	1	95954			29016	6903	23804	23831	32264	32264					0.07055797762859584
LENKDEIL	8	Unmodified	_LENKDEIL_					0	0	0		nc|ENSG00000122483|Q5T9S5|CCDC18;ENSG00000122483|ENST00000690025|CCDC18;nc|ENSG00000122483|Q5T9S5-2|CCDC18	nc|ENSG00000122483|Q5T9S5|CCDC18	nc|ENSG00000122483|Q5T9S5|CCDC18	MULTI-SECPEP	OvCa9_classI_Rep3	3	487.2822570800781	2	487.263665	972.512776	-0.75863	-0.00036965	0.91615	0.00044641	0.15752	7.6754E-05	487.263833018476	98.342	1.0865	96.583	96.262	97.349	-1.7595					29	20	2	0	0	0	0.028476	1	6552	6552		106.42	0	1	30560			29017	3535	23805	23832	32265	32265					0.025420439694244124
LENKGLSHSL	10	Unmodified	_LENKGLSHSL_					0	0	0			REV__ENSG00000130449|ENST00000252744|ZSWIM6	REV__ENSG00000130449|ENST00000252744|ZSWIM6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.2811889648438	2	549.301113	1096.58767	-1.2737	-0.00069967	4.3433	0.0023858	3.0696	0.0016861	549.303377013738	95.321	1.6663	92.852	92.46	94.127	-2.4685					74	32	3	0	0	0	0.026734	1	8448	8448		39.253	0	1	450360	+		29018	18946	23806	23833	32266	32266					0.04324226500671102
LENLAISLPE	10	Unmodified	_LENLAISLPE_					0	0	0		nc|ENSG00000118965|Q9P2L0|WDR35;ENSG00000118965|ENST00000281405|WDR35;ENST00000445063.5_1_2:20113365-20153734:-|nuORF	nc|ENSG00000118965|Q9P2L0|WDR35	nc|ENSG00000118965|Q9P2L0|WDR35	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.830810546875	2	549.805697	1097.59684	2.1464	0.0011801	0.28209	0.00015509	2.4284	0.0013352	550.3073013707744	80.127	0.11816	80.127	80.074	80.192	0					4	2	2	0	0	0	0.026972	1	8201	8201		90.601	7.8504	1	305640			29019	3334	23807	23834	32267	32267					0.05194575066366269
LENLFKLL	8	Unmodified	_LENLFKLL_					0	0	0			REV__tr|A0A7D7ACN9|A0A7D7ACN9_9CLOTCapAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20020PE=3SV=1	REV__tr|A0A7D7ACN9|A0A7D7ACN9_9CLOTCapAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20020PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	495.3066101074219	2	495.305136	988.595718	1.0061	0.0004983	-1.0891	-0.00053941	-0.083004	-4.1112E-05	495.3044382673932	150.27	1.2022	150.27	149.94	151.15	0					42	23	2	0	0	0	0.66057	1	17608	17608		51.335	3.6781	1	274920	+		29020	32690	23808	23835	32268	32268					0.10096405488093296
LENLLASII	9	Unmodified	_LENLLASII_					0	0	0		nc|ENSG00000171509|Q9HBX9-5|RXFP1;nc|ENSG00000171509|Q9HBX9-4|RXFP1;ENSG00000171509|ENST00000307765|RXFP1;nc|ENSG00000171509|Q9HBX9-2|RXFP1	nc|ENSG00000171509|Q9HBX9-5|RXFP1	nc|ENSG00000171509|Q9HBX9-5|RXFP1	MULTI-MSMS	OvCa9_classI_Rep2	2	493.3000183105469	2	493.30005	984.585547	1.5276	0.00075355	-2.1016	-0.0010367	-0.57398	-0.00028315	493.2989778835464	91.393	1.4759	90.158	89.954	91.43	-1.2355					53	27	2	0	0	0	0.11471	1	8105	8105		93.195	2.4188	1	769980			29021	7209	23809	23836	32269	32269					0.09263797762855575
LENLLDHLAE	10	Unmodified	_LENLLDHLAE_					0	0	0		nc|ENSG00000148655|Q9H2I8|LRMDA;ENST00000593699.5_1_10:77643188-78317043:+|nuORF;ENSG00000148655|ENST00000611255|LRMDA	nc|ENSG00000148655|Q9H2I8|LRMDA	nc|ENSG00000148655|Q9H2I8|LRMDA	MULTI-MSMS	OvCa99_classI_Rep5	1	583.8057861328125	2	583.806228	1165.5979	-0.73896	-0.00043141	-0.80366	-0.00046918	-1.5426	-0.00090059	583.8058014433414	35.269	1.0716	35.269	34.957	36.029	0					60	22	5	0	0	0	0.71173	1	1782	1782		29.17	0.020503	1	2869500			29022	5420	23810	23837	32270	32270					0.02172789435235245
LENLLQQV	8	Unmodified	_LENLLQQV_					0	0	0		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;DOCK8|p.R493Nfs*16|1|0.09|ENSG00000107099|chr9:339061-339061|G/-|frameshift_variant;ENST00000454469.6_1_9:214976-340322:+|nuORF;ENST00000495184.5_1_9:286487-368312:+|nuORF;ENST00000474772.1_1_9:311974-314315:+|nuORF;ENST00000478380.5_1_9:286487-312499:+|nuORF	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-MSMS	OvCa99_classI_Rep5	1	478.7745666503906	2	478.7742	955.533846	1.767	0.00084599	-1.2539	-0.00060032	0.51314	0.00024568	478.7734578684599	126.93	0.31303	126.93	126.65	126.96	0					9	6	2	0	0	0	0.55617	1	14672	14672		71.877	5.4482	1	143120			29023	2585	23811	23838	32271	32271					0.0543005406894963
LENLLTRETK	10	Unmodified	_LENLLTRETK_					0	0	0		nc|ENSG00000136111|O60343-4|TBC1D4;nc|ENSG00000136111|O60343-5|TBC1D4;nc|ENSG00000136111|O60343-2|TBC1D4;nc|ENSG00000136111|O60343-3|TBC1D4;ENSG00000136111|ENST00000377636|TBC1D4	nc|ENSG00000136111|O60343-4|TBC1D4	nc|ENSG00000136111|O60343-4|TBC1D4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	407.2335205078125	3	406.23471	1215.6823	0.32577	0.00013234	0.8877	0.00036061	1.2135	0.00049295	406.234977955091	44.611	1.0747	41.572	41.207	42.281	-3.0385					41	20	3	0	0	0	0.02678	1	2219	2219		17.833	0	1	114040			29024	4458	23812	23839	32272	32272					0.08308740251982272
LENLNRLQVML	11	Unmodified	_LENLNRLQVML_					0	0	0		ENST00000253814.5_1_5:141488387-141511833:+|nuORF	ENST00000253814.5_1_5:141488387-141511833:+|nuORF	ENST00000253814.5_1_5:141488387-141511833:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	448.25390625	3	448.255228	1341.74386	1.9	0.00085167	-2.1376	-0.00095821	-0.23768	-0.00010654	448.2543107430331	75.072	2.1296	73.101	72.324	74.454	-1.9711					93	40	4	0	0	0	0.68059	1	6169	6169		36.318	1.1394	1	367200			29025	9806	23813	23840	32273	32273					0.08665348679619456
LENPFKKMK	9	Oxidation (M)	_LENPFKKM(Oxidation (M))K_		LENPFKKM(1)K		LENPFKKM(93)K	0	0	1		NRIP1|p.N1052Ifs*37|1|0.33|ENSG00000180530|chr21:14965013-14965038|TCTTGGAGAGTCTTTTTCATACTCAT/-|frameshift_variant;ENSG00000180530|ENST00000318948|NRIP1	NRIP1|p.N1052Ifs*37|1|0.33|ENSG00000180530|chr21:14965013-14965038|TCTTGGAGAGTCTTTTTCATACTCAT/-|frameshift_variant	NRIP1|p.N1052Ifs*37|1|0.33|ENSG00000180530|chr21:14965013-14965038|TCTTGGAGAGTCTTTTTCATACTCAT/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	575.8177490234375	2	575.818084	1149.62162	1.6009	0.00092181	-1.8808	-0.001083	-0.27988	-0.00016116	575.8170124478966	112.58	1.2482	112.58	112.25	113.5	0					85	28	5	0	0	0	0.11471	1	12827	12827		93.195	16.421	1	4222100			29026	7876	23814	23841	32274	32274		238			0.05278931668067344
LENPLEHGEL	10	Unmodified	_LENPLEHGEL_					0	0	0			REV__ENSG00000013016|ENST00000322054|EHD3	REV__ENSG00000013016|ENST00000322054|EHD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.8174438476562	2	575.790578	1149.5666	1.982	0.0011412	-0.65184	-0.00037532	1.3302	0.0007659	575.7896158180472	113.06	0.50091	113.06	112.83	113.33	0					20	10	3	0	0	0	0.027575	1	12852	12852		101.25	21.54	1	123390	+		29027	16503	23815	23842	32275	32275					-0.002197835988454244
LENQNKTLI	9	Unmodified	_LENQNKTLI_					0	0	0		ENSG00000123268|ENST00000262053|ATF1;nc|ENSG00000095794|Q03060-23|CREM;nc|ENSG00000095794|Q03060-9|CREM;ENST00000494983.1_1_2:208441377-208461779:+|nuORF;nc|ENSG00000095794|Q03060-24|CREM;nc|ENSG00000095794|Q03060-8|CREM;nc|ENSG00000123268|P18846-2|ATF1;nc|ENSG00000118260|P16220-3|CREB1;ENSG00000118260|ENST00000353267|CREB1;nc|ENSG00000118260|P16220-1|CREB1;nc|ENSG00000095794|Q03060-32|CREM;nc|ENSG00000095794|Q03060-26|CREM;nc|ENSG00000095794|Q03060-21|CREM;ENSG00000095794|ENST00000685392|CREM;nc|ENSG00000095794|Q03060-6|CREM	ENSG00000123268|ENST00000262053|ATF1;nc|ENSG00000095794|Q03060-32|CREM	ENSG00000123268|ENST00000262053|ATF1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.8062744140625	2	536.803488	1071.59242	2.5605	0.0013745	3.1328	0.0016817	5.6933	0.0030562	536.8050454966926	121.41	0.79391	121.41	121.1	121.9	0					35	17	3	0	0	0	0.091859	1	13964	13964		99.375	3.1845	1	484170			29028	3585;1940	23816	23843	32276	32276					0.059491106434506946
LENQSHETL	9	Unmodified	_LENQSHETL_					0	0	0		ENSG00000132688|ENST00000368223|NES;NES|p.V1249Gfs*6|1|0.06|ENSG00000132688|chr1:156670442-156670443|-/C|frameshift_variant	ENSG00000132688|ENST00000368223|NES	ENSG00000132688|ENST00000368223|NES	MULTI-MSMS	OvCa99_classI_Rep5	1	535.7596435546875	2	535.759278	1069.504	-0.34406	-0.00018433	-0.17736	-9.5024E-05	-0.52142	-0.00027935	535.7590900411153	44.695	0.76119	44.695	44.484	45.245	0					33	16	3	0	0	0	0.060996	1	3041	3041		112.41	5.4034	1	1733700			29029	4164	23817	23844	32277	32277					-0.027969296670335098
LENSGVLNRI	10	Unmodified	_LENSGVLNRI_					0	0	0		ENSG00000213066|ENST00000366847|CEP43;nc|ENSG00000272980|O95684-2|CEP43;ENST00000609590.1_1_6:167412900-167416770:+|nuORF;ENST00000494781.5_1_6:167412945-167425107:+|nuORF;nc|ENSG00000164691|Q8N103-3|TAGAP	ENSG00000213066|ENST00000366847|CEP43;nc|ENSG00000164691|Q8N103-3|TAGAP	ENSG00000213066|ENST00000366847|CEP43	MULTI-MSMS	OvCa99_classI_Rep5	1	557.8152465820312	2	557.814387	1113.61422	-0.11645	-6.4958E-05	-0.27257	-0.00015204	-0.38902	-0.000217	557.8140835126975	55.172	0.62903	55.172	54.891	55.52	0					36	14	3	0	0	0	0.023817	1	4494	4494		143.37	17.131	1	2358100			29030	9115;15148	23818	23845	32278	32278					0.06195915392004281
LENSKIKGK	9	Unmodified	_LENSKIKGK_					0	0	0		CON__Q05443	CON__Q05443	CON__Q05443	MULTI-MSMS	OvCa9_classI_Rep2	2	508.80853271484375	2	508.808574	1015.60259	-1.1049	-0.00056221	0.50065	0.00025473	-0.6043	-0.00030747	508.8087276313577	60.665	1.7306	57.895	57.396	59.126	-2.7702					90	32	4	0	0	0	0.16562	1	4487	4487		82.241	0	1	689010		+	29031	631	23819	23846	32279	32279					0.09541718368677721
LENTLAIII	9	Unmodified	_LENTLAIII_					0	0	0		tr|A0A7D7A1C6|A0A7D7A1C6_9CLOTMurR/RpiRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_18130PE=4SV=1	tr|A0A7D7A1C6|A0A7D7A1C6_9CLOTMurR/RpiRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_18130PE=4SV=1	tr|A0A7D7A1C6|A0A7D7A1C6_9CLOTMurR/RpiRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_18130PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	500.3092346191406	2	500.307875	998.601197	1.4865	0.00074369	0.11828	5.9179E-05	1.6048	0.00080287	500.3077613670795	148.39	0.64081	148.39	148.13	148.77	0					23	12	3	0	0	0	0.37135	1	17365	17365		54.776	0	1	89016			29032	36034	23820	23847	32280	32280					0.10184084279910621
LENTMKDQQ	9	Unmodified	_LENTMKDQQ_					0	0	0		ENSG00000182150|ENST00000653738|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	ENSG00000182150|ENST00000653738|ERCC6L2	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.829345703125	2	553.760963	1105.50737	1.0379	0.00057476	-1.6807	-0.00093073	-0.64282	-0.00035597	553.7599162604174	80.157	1.9763	78.462	77.141	79.118	-1.6951					84	38	3	0	0	0	0.027462	1	6811	6811		37.159	0	1	232370			29033	7971	23821	23848	32281	32281					-0.04116002884711634
LENTRNIGI	9	Unmodified	_LENTRNIGI_					0	0	0		tr|A0A553SHA7|A0A553SHA7_NIACIElongationfactorGOS=NialliacirculansOX=1397GN=fusAPE=3SV=1	tr|A0A553SHA7|A0A553SHA7_NIACIElongationfactorGOS=NialliacirculansOX=1397GN=fusAPE=3SV=1	tr|A0A553SHA7|A0A553SHA7_NIACIElongationfactorGOS=NialliacirculansOX=1397GN=fusAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.2893676757812	2	515.288005	1028.56146	1.873	0.00096512	2.9215	0.0015054	4.7945	0.0024705	515.2877915232308	76.663	1.3491	76.663	76.28	77.629	0					100	32	5	0	0	0	0.094616	1	7730	7730		98.629	2.4389	1	3816000			29034	33252	23822	23849	32282	32282					0.04831957329179204
LENVEFEKL	9	Unmodified	_LENVEFEKL_					0	0	0		tr|A0A7D6VXW2|A0A7D6VXW2_9CLOTIronhydrogenasesmallsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_14260PE=4SV=1	tr|A0A7D6VXW2|A0A7D6VXW2_9CLOTIronhydrogenasesmallsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_14260PE=4SV=1	tr|A0A7D6VXW2|A0A7D6VXW2_9CLOTIronhydrogenasesmallsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_14260PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	560.7979125976562	2	560.797872	1119.58119	-0.67152	-0.00037659	0.081014	4.5432E-05	-0.59051	-0.00033115	560.7979621587541	101.06	2.3283	100.29	99.674	102	-0.76401					78	46	2	0	0	0	0.075543	1	9249	9249		104.06	5.4748	1	1988100			29035	35304	23823	23850	32283	32283					0.026182885492971764
LENWLEPI	8	Unmodified	_LENWLEPI_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.2669982910156	2	507.26875	1012.52295	-2.4376	-0.0012365	-3.3003	-0.0016741	-5.7379	-0.0029107	507.26701545715287	87.855	2.4969	85.229	84.901	87.398	-2.6269					133	49	4	0	0	0	0.60331	1	7557	7557		63.306	8.53	1	2015000			29036	4634	23824	23851	32284	32284					0.01718651694648088
LEPAAEMLVL	10	Unmodified	_LEPAAEMLVL_					0	0	0			REV__nc|ENSG00000127412|Q9NQA5-2|TRPV5	REV__nc|ENSG00000127412|Q9NQA5-2|TRPV5	MULTI-SECPEP	OvCa9_classI_Rep3	3	543.3231201171875	2	543.299193	1084.58383	1.2153	0.00066026	3.5742	0.0019419	4.7895	0.0026021	543.8042048384259	120.29	0.24594	119.27	119.12	119.36	-1.0271					6	4	2	0	0	0	0.02661	1	9161	9161		49.442	0	1	10363	+		29037	18814	23825	23852	32285	32285					0.04492420682595366
LEPASPFPAF	10	Unmodified	_LEPASPFPAF_					0	0	0		ENST00000369902.7_1_10:104391017-104391560:+|nuORF	ENST00000369902.7_1_10:104391017-104391560:+|nuORF	ENST00000369902.7_1_10:104391017-104391560:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.8626098632812	2	538.276575	1074.5386	1.116	0.00060069	1.0904	0.00058694	2.2064	0.0011876	538.27706488168	137.84	0.52042	136.31	136.07	136.6	-1.5284					19	11	2	0	0	0	0.026915	1	13401	13401		35.618	0	1	21762			29038	10909	23826	23853	32286	32286					0.004309382117071436
LEPCKSEPQ	9	Unmodified	_LEPCKSEPQ_					0	0	0			REV__ENSG00000166266|ENST00000393094|CUL5	REV__ENSG00000166266|ENST00000393094|CUL5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7936401367188	2	515.747324	1029.4801	-0.90507	-0.00046679	0.82056	0.0004232	-0.084513	-4.3587E-05	515.747452017993	93.46	0.39124	90.953	90.714	91.105	-2.5072					13	7	3	0	0	0	0.027402	1	8122	8122		66.429	0.96389	1	30644	+		29039	21171	23827	23854	32287	32287					-0.033464864250845494
LEPCKSEPQ	9	Unmodified	_LEPCKSEPQ_					0	0	0			REV__ENSG00000166266|ENST00000393094|CUL5	REV__ENSG00000166266|ENST00000393094|CUL5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.747324	1029.4801	0.77287	0.0003986	-0.57712	-0.00029765	0.19575	0.00010096	515.746837698327	92.286	0.68434	91.118	90.71	91.394	-1.168	0.13718	-0.00065042	NaN	66.429	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19225	+		29040	21171	23827	23854							-0.033464864250845494
LEPCKSEPQ	9	Unmodified	_LEPCKSEPQ_					0	0	0			REV__ENSG00000166266|ENST00000393094|CUL5	REV__ENSG00000166266|ENST00000393094|CUL5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	515.747324	1029.4801	-0.85865	-0.00044284	-1.5395	-0.00079399	-2.3981	-0.0012368	515.746068681959	92.834	0.81801	90.872	90.56	91.378	-1.9617	-0.10912	-0.0016431	NaN	66.429	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35094	+		29041	21171	23827	23854							-0.033464864250845494
LEPDLAEKN	9	Unmodified	_LEPDLAEKN_					0	0	0		ENSG00000138162|ENST00000369005|TACC2;nc|ENSG00000138162|O95359-6|TACC2;nc|ENSG00000138162|O95359-1|TACC2;nc|ENSG00000138162|O95359-5|TACC2	ENSG00000138162|ENST00000369005|TACC2	ENSG00000138162|ENST00000369005|TACC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.3217163085938	2	514.766571	1027.51859	-0.37064	-0.00019079	-0.16776	-8.6359E-05	-0.5384	-0.00027715	514.766562978745	123.6	0.39581	122.23	122.05	122.45	-1.3666					10	6	2	0	0	0	0.027462	1	11691	11691		34.173	0	1	18019			29042	4664	23828	23855	32288	32288					0.005931424811024044
LEPDLAEKN	9	Unmodified	_LEPDLAEKN_					0	0	0		ENSG00000138162|ENST00000369005|TACC2;nc|ENSG00000138162|O95359-6|TACC2;nc|ENSG00000138162|O95359-1|TACC2;nc|ENSG00000138162|O95359-5|TACC2	ENSG00000138162|ENST00000369005|TACC2	ENSG00000138162|ENST00000369005|TACC2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	514.766571	1027.51859	1.821	0.0009374	-1.5477	-0.00079669	0.27334	0.00014071	514.7660271695119	123.36	0.41496	122.33	122.05	122.46	-1.0377	0.045325	-0.0011374	NaN	34.173	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25967			29043	4664	23828	23855							0.005931424811024044
LEPEELLEN	9	Unmodified	_LEPEELLEN_					0	0	0		FGFR2-USP10|1|fusion	FGFR2-USP10|1|fusion	FGFR2-USP10|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.324462890625	2	543.271687	1084.52882	1.7517	0.00095166	1.2702	0.00069006	3.0219	0.0016417	543.2722601612321	135.98	0.42535	135.98	135.73	136.16	0					14	8	2	0	0	0	0.02741	1	15846	15846		60.972	2.742	1	141710			29044	14330	23829	23856	32289	32289					-0.01006294584317402
LEPESEDLIP	10	Unmodified	_LEPESEDLIP_					0	0	0		ENSG00000164309|ENST00000446378|CMYA5;CMYA5|p.I1537Hfs*7|1|0.1|ENSG00000164309|chr5:79733373-79733374|-/C|frameshift_variant;CMYA5|p.L2315Tfs*2|1|0.05|ENSG00000164309|chr5:79735707-79735708|-/A|frameshift_variant	ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	571.8074340820312	2	571.284794	1140.55504	0.14341	8.1926E-05	3.9781	0.0022726	4.1215	0.0023546	571.2882666311866	90.477	0.2569	87.902	87.75	88.007	-2.575					6	4	2	0	0	0	0.026802	1	7800	7800		51.335	14.889	1	6823.9			29045	6445	23830	23857	32290	32290					-0.009620254128321903
LEPGPPTVVL	10	Unmodified	_LEPGPPTVVL_					0	0	0			REV__nc|ENSG00000113721|P09619-2|PDGFRB	REV__nc|ENSG00000113721|P09619-2|PDGFRB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.8041076660156	2	511.30005	1020.58555	-2.3525	-0.0012028	2.0012	0.0010232	-0.35129	-0.00017961	511.30036978155556	107.99	0.88952	106.11	105.93	106.82	-1.8784					32	17	3	0	0	0	0.027088	1	9852	9852		14.137	5.9058	1	63235	+		29046	18168	23831	23858	32291	32291					0.07607797762852897
LEPGPPTVVL	10	Unmodified	_LEPGPPTVVL_					0	0	0			REV__nc|ENSG00000113721|P09619-2|PDGFRB	REV__nc|ENSG00000113721|P09619-2|PDGFRB	MULTI-MATCH	OvCa9_classI_Rep2	2		2	511.30005	1020.58555	-0.12556	-6.42E-05	-0.31382	-0.00016045	-0.43938	-0.00022465	511.2990601136805	106.49	1.1901	106.18	105.98	107.17	-0.30836	0.037058	-0.00050899	NaN	14.137	41	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48700	+		29047	18168	23831	23858							0.07607797762852897
LEPGPPTVVL	10	Unmodified	_LEPGPPTVVL_					0	0	0			REV__nc|ENSG00000113721|P09619-2|PDGFRB	REV__nc|ENSG00000113721|P09619-2|PDGFRB	MULTI-MATCH	OvCa9_classI_Rep3	3		2	511.30005	1020.58555	0.30309	0.00015497	-1.1453	-0.00058557	-0.84217	-0.0004306	511.2986097713025	107.41	1.0936	106.15	105.95	107.04	-1.267	0.0010699	-0.0013592	NaN	14.137	32	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46757	+		29048	18168	23831	23858							0.07607797762852897
LEPGPRPDP	9	Unmodified	_LEPGPRPDP_					0	0	0			REV__nc|ENSG00000090006|Q8N2S1|LTBP4	REV__nc|ENSG00000090006|Q8N2S1|LTBP4	MULTI-SECPEP	OvCa9_classI_Rep2	2	490.24603271484375	2	489.256174	976.497795	-1.3472	-0.00065913	0.0059573	2.9146E-06	-1.3413	-0.00065622	489.25604076675177	62.45	0.85178	59.691	59.137	59.989	-2.7593					32	16	3	0	0	0	0.027433	1	4678	4678		23.523	8.8586	1	26229	+		29049	28754	23832	23859	32292	32292					0.008605968920846863
LEPGRKSFC	9	Unmodified	_LEPGRKSFC_					0	0	0		nc|ENSG00000149177|Q12913-3|PTPRJ;ENSG00000149177|ENST00000418331|PTPRJ	nc|ENSG00000149177|Q12913-3|PTPRJ	nc|ENSG00000149177|Q12913-3|PTPRJ	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.3201293945312	2	518.765852	1035.51715	-0.1157	-6.002E-05	-1.2237	-0.00063481	-1.3394	-0.00069483	518.7662104250863	105.56	0.24911	105.12	104.95	105.2	-0.43642					7	4	2	0	0	0	0.027448	1	9813	9813		44.117	0	1	5904			29050	15084	23833	23860	32293	32293					0.0008122991134769109
LEPHFFLI	8	Unmodified	_LEPHFFLI_					0	0	0			REV__nc|ENSG00000176927|A4FU69-3|EFCAB5	REV__nc|ENSG00000176927|A4FU69-3|EFCAB5	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.3138427734375	2	508.284203	1014.55385	-0.2186	-0.00011111	2.5447	0.0012934	2.3261	0.0011823	508.2860141599856	69.495	0.2844	69.495	69.307	69.591	0					9	6	2	0	0	0	0.028476	1	6605	6605		39.021	21.657	1	253450	+		29051	21977	23834	23861	32294	32294					0.047158497995837934
LEPHNAFG	8	Unmodified	_LEPHNAFG_					0	0	0			REV__ENSG00000172154|ENST00000302124|OR8I2	REV__ENSG00000172154|ENST00000302124|OR8I2	MULTI-MSMS	OvCa99_classI_Rep5	1	442.71820068359375	2	442.716685	883.418816	1.4823	0.00065625	-1.3261	-0.0005871	0.15619	6.9148E-05	442.71592277200006	72.01	1.0145	72.01	71.749	72.764	0					55	24	4	0	0	0	0.57878	1	6980	6980		68.485	8.1907	1	3461900	+		29052	21676	23835	23862	32295	32295					-0.027556303421874873
LEPHNAFG	8	Unmodified	_LEPHNAFG_					0	0	0			REV__ENSG00000172154|ENST00000302124|OR8I2	REV__ENSG00000172154|ENST00000302124|OR8I2	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	442.716685	883.418816	1.4823	0.00065625	-1.3261	-0.0005871	0.15619	6.9148E-05	442.71592277200006	72.01	1.0145	72.01	71.749	72.764	0	0	0	NaN	68.485	55	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3461900	+		29053	21676	23835	23862							-0.027556303421874873
LEPHPDLRA	9	Unmodified	_LEPHPDLRA_					0	0	0			REV__ENST00000480912.5_1_6:31847863-31860642:-|nuORF	REV__ENST00000480912.5_1_6:31847863-31860642:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.30322265625	2	524.282723	1046.55089	-0.81465	-0.0004271	0.39356	0.00020634	-0.42108	-0.00022077	524.2828362882484	44.595	0.71775	44.595	44.305	45.023	0					39	15	4	0	0	0	0.027448	1	3060	3060		44.117	0	1	2303800	+		29054	23150	23836	23863	32296	32296					0.02947974674748366
LEPKRFTPPP	10	Unmodified	_LEPKRFTPPP_					0	0	0			REV__STK3-NIPAL2|2|fusion	REV__STK3-NIPAL2|2|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	591.3720092773438	2	591.337498	1180.66044	-0.21578	-0.0001276	-2.7594	-0.0016318	-2.9752	-0.0017594	591.3362885438307	72.385	0.31267	69.877	69.747	70.06	-2.5071					8	5	2	0	0	0	0.026551	1	5853	5853		42.864	0	1	7078.3	+		29055	29461	23837	23864	32297	32297					0.0773398029409691
LEPKRFTPPP	10	Unmodified	_LEPKRFTPPP_					0	0	0			REV__STK3-NIPAL2|2|fusion	REV__STK3-NIPAL2|2|fusion	MULTI-SECPEP	OvCa9_classI_Rep3	3	591.3721923828125	2	591.337498	1180.66044	-0.58943	-0.00034855	1.5424	0.00091207	0.95295	0.00056352	591.3391445455846	72.661	0.4976	70.058	69.869	70.366	-2.6023					14	9	2	0	0	0	0.027363	1	3485	3485		75.043	20.267	1	27422	+		29056	29461	23837	23864	32298	32298					0.0773398029409691
LEPKRFTPPP	10	Unmodified	_LEPKRFTPPP_					0	0	0			REV__STK3-NIPAL2|2|fusion	REV__STK3-NIPAL2|2|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	591.373046875	2	591.337498	1180.66044	-0.65302	-0.00038616	3.1881	0.0018853	2.5351	0.0014991	591.3384650371431	73.804	0.24211	70.407	70.22	70.462	-3.3961					5	4	2	0	0	0	0.02663	1	5725	5725		42.864	0	1	23895	+		29057	29461	23837	23864	32299	32299					0.0773398029409691
LEPLFTSL	8	Unmodified	_LEPLFTSL_					0	0	0			REV__tr|A0A553SNX0|A0A553SNX0_NIACIIsoprenyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_25335PE=3SV=1	REV__tr|A0A553SNX0|A0A553SNX0_NIACIIsoprenyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_25335PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	460.9224853515625	2	460.260394	918.506234	-0.44262	-0.00020372	-3.516	-0.0016183	-3.9587	-0.001822	460.25876321351535	55.294	0.44916	55.294	55.15	55.599	0					15	10	2	0	0	0	0.028476	1	4517	4517		50.025	0	1	364040	+		29058	30469	23838	23865	32300	32300					0.04372150808717379
LEPLFTSL	8	Unmodified	_LEPLFTSL_					0	0	0			REV__tr|A0A553SNX0|A0A553SNX0_NIACIIsoprenyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_25335PE=3SV=1	REV__tr|A0A553SNX0|A0A553SNX0_NIACIIsoprenyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_25335PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	460.260394	918.506234	-0.42761	-0.00019681	-1.0271	-0.00047274	-1.4547	-0.00066955	460.2586005519738	57.9	1.4011	55.107	54.724	56.125	-2.792	-0.00099027	0.0028417	NaN	50.025	67	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128770	+		29059	30469	23838	23865							0.04372150808717379
LEPLHRPI	8	Unmodified	_LEPLHRPI_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MSMS	OvCa99_classI_Rep5	1	487.7933044433594	2	487.792727	973.5709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.718	1	45.718	45.218	46.218	0								0	0	0	0.30129	1	3181	3181		40.573	1.7665	1				29060	1754	23839	23866	32301	32301					0.08305770405377189
LEPLKDIIP	9	Unmodified	_LEPLKDIIP_					0	0	0			REV__tr|A0A553SPV7|A0A553SPV7_NIACIN5-carboxyaminoimidazoleribonucleotidesynthaseOS=NialliacirculansOX=1397GN=purKPE=3SV=1	REV__tr|A0A553SPV7|A0A553SPV7_NIACIN5-carboxyaminoimidazoleribonucleotidesynthaseOS=NialliacirculansOX=1397GN=purKPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	519.3138427734375	2	519.3157	1036.61685	-0.93297	-0.0004845	-2.4106	-0.0012519	-3.3436	-0.0017364	519.3142870304888	52.482	2.3784	49.669	49.096	51.474	-2.8129					99	47	4	0	0	0	0.55011	1	3499	3499		37.812	0.65241	1	328220	+		29061	30576	23840	23867	32302	32302					0.10000370796956304
LEPLRNNI	8	Unmodified	_LEPLRNNI_					0	0	0		ENSG00000176979|ENST00000512596|TRIM60	ENSG00000176979|ENST00000512596|TRIM60	ENSG00000176979|ENST00000512596|TRIM60	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.7553405761719	2	484.779816	967.545079	0.77981	0.00037803	-0.51976	-0.00025197	0.26005	0.00012607	484.77929492326444	37.517	0.99768	34.624	34.242	35.239	-2.8925					28	19	2	0	0	0	0.028476	1	1414	1414		24.203	11.244	1	34146			29062	7647	23841	23868	32303	32303					0.06000876163091107
LEPLRNNI	8	Unmodified	_LEPLRNNI_					0	0	0		ENSG00000176979|ENST00000512596|TRIM60	ENSG00000176979|ENST00000512596|TRIM60	ENSG00000176979|ENST00000512596|TRIM60	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.8276672363281	2	484.779816	967.545079	-0.015446	-7.4879E-06	-0.34692	-0.00016818	-0.36236	-0.00017567	484.7794550928245	78.153	1.2851	75.336	75.116	76.401	-2.8165					52	26	3	0	0	0	0.028476	1	6281	6281		37.159	8.0096	1	557630			29063	7647	23841	23868	32304	32304					0.06000876163091107
LEPLRNNI	8	Unmodified	_LEPLRNNI_					0	0	0		ENSG00000176979|ENST00000512596|TRIM60	ENSG00000176979|ENST00000512596|TRIM60	ENSG00000176979|ENST00000512596|TRIM60	MULTI-MATCH	OvCa9_classI_Rep2	2		2	484.779816	967.545079	-2.0629	-0.001	2.3113	0.0011205	0.24849	0.00012046	484.78074981030784	37.63	0.63828	34.92	34.633	35.271	-2.7097	0.14802	0.0015314	NaN	17.365	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18660			29064	7647	23841	23868							0.06000876163091107
LEPLRQSL	8	Unmodified	_LEPLRQSL_					0	0	0		nc|ENSG00000138468|Q9BQF6-2|SENP7;ENSG00000138468|ENST00000394095|SENP7	nc|ENSG00000138468|Q9BQF6-2|SENP7	nc|ENSG00000138468|Q9BQF6-2|SENP7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.3013916015625	2	478.282192	954.549831	-2.3478	-0.0011229	1.557	0.00074468	-0.79081	-0.00037823	478.2827794082245	88.182	1.2572	85.579	85.079	86.336	-2.6027					68	24	4	0	0	0	0.028476	1	7497	7497		58.782	0	1	254320			29065	4691	23842	23869	32305	32305					0.07073760305854648
LEPPTLPL	8	Unmodified	_LEPPTLPL_					0	0	0		ENSG00000105647|ENST00000222254|PIK3R2;ENST00000556961.1_1_14:92336310-92336571:-|nuORF	ENSG00000105647|ENST00000222254|PIK3R2	ENSG00000105647|ENST00000222254|PIK3R2	MSMS	OvCa9_classI_Rep4_	4	440.26385498046875	2	440.262936	878.51132	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.82	1	141.37	140.87	141.87	-1.4427								0	0	0	0.30129	1	13976	13976		35.201	8.4046	1				29066	2481	23843	23870	32306	32306					0.06720454671335574
LEPQELSPL	9	Unmodified	_LEPQELSPL_					0	0	0		ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;YY1AP1|p.N771Tfs*7|1|0.1|ENSG00000163374|chr1:155659736-155659736|T/-|frameshift_variant;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;nc|ENSG00000163374|Q9H869-7|YY1AP1;ENST00000500626.2_1_1:155619824-155629984:-|nuORF;ARHGEF2-GON4L|1|fusion;ARHGEF2-GON4L|2|fusion;ARHGEF2-GON4L|3|fusion	ENSG00000116580|ENST00000368331|GON4L;ARHGEF2-GON4L|1|fusion	ARHGEF2-GON4L|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.3040771484375	2	513.279315	1024.54408	0.26668	0.00013688	-3.9928	-0.0020494	-3.7261	-0.0019125	513.2777943843898	103.4	0.26384	101.97	101.87	102.13	-1.4347					6	4	2	0	0	0	0.027017	1	7157	7157		93.195	32.224	1	5644.2			29067	112;3187	23844	23871	32307	32307					0.032786170035251416
LEPQLTYSI	9	Unmodified	_LEPQLTYSI_					0	0	0		nc|ENSG00000181019|P15559-3|NQO1;nc|ENSG00000181019|P15559-2|NQO1;ENSG00000181019|ENST00000320623|NQO1	nc|ENSG00000181019|P15559-3|NQO1	nc|ENSG00000181019|P15559-3|NQO1	MULTI-MSMS	OvCa99_classI_Rep5	1	532.2857055664062	2	532.28714	1062.55973	1.95	0.0010379	-2.6587	-0.0014152	-0.70878	-0.00037727	532.2855788722117	137.79	0.95381	137.79	137.4	138.35	0					48	20	4	0	0	0	0.28934	1	16074	16074		64.207	0	1	778910			29068	7913	23845	23872	32308	32308					0.030949035205594555
LEPQPLWAPL	10	Unmodified	_LEPQPLWAPL_					0	0	0			REV__KRTAP9-9|p.T68Sfs*79|1|0.17|ENSG00000198083|chr17:41255587-41255588|-/G|frameshift_variant	REV__KRTAP9-9|p.T68Sfs*79|1|0.17|ENSG00000198083|chr17:41255587-41255588|-/G|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.3172607421875	2	582.326599	1162.63865	0.090475	5.2686E-05	-2.5513	-0.0014857	-2.4608	-0.001433	582.3251499037957	105.59	0.47955	105.59	105.31	105.79	0					17	10	2	0	0	0	0.026752	1	11874	11874		35.618	2.8059	1	389990	+		29069	28344	23846	23873	32309	32309					0.06383175545511222
LEPRFRHI	8	Unmodified	_LEPRFRHI_					0	0	0			REV__nc|ENSG00000133816|O94851-5|MICAL2	REV__nc|ENSG00000133816|O94851-5|MICAL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.3519287109375	2	534.309075	1066.6036	2.1385	0.0011426	0.076057	4.0638E-05	2.2145	0.0011832	534.3087426802526	85.08	0.41074	85.08	84.841	85.252	0					13	9	2	0	0	0	0.028476	1	8928	8928		31.955	0	1	179090	+		29070	19159	23847	23874	32310	32310					0.07295977528224284
LEPRGYSL	8	Unmodified	_LEPRGYSL_					0	0	0		nc|ENSG00000100890|O15091-4|PRORP;nc|ENSG00000100890|O15091-2|PRORP;ENSG00000100890|ENST00000534898|PRORP	nc|ENSG00000100890|O15091-4|PRORP	nc|ENSG00000100890|O15091-4|PRORP	MULTI-MSMS	OvCa99_classI_Rep5	1	467.75457763671875	2	467.753267	933.491981	0.039409	1.8433E-05	0.2218	0.00010375	0.26121	0.00012218	467.75329346339265	68.822	0.87152	68.822	68.274	69.145	0					45	20	3	0	0	0	0.64026	1	6505	6505		55.504	4.3115	1	3299600			29071	2117	23848	23875	32311	32311					0.022574983804247495
LEPRLSPL	8	Unmodified	_LEPRLSPL_					0	0	0			REV__nc|ENSG00000021574|Q9UBP0-4|SPAST	REV__nc|ENSG00000021574|Q9UBP0-4|SPAST	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.32421875	2	462.779285	923.544017	-0.90144	-0.00041717	0.95236	0.00044073	0.050915	2.3562E-05	462.77953843927065	91.413	1.218	88.87	88.553	89.771	-2.5425					43	23	3	0	0	0	0.028476	1	7993	7993		42.396	0	1	121920	+		29072	16546	23849	23876	32312	32312					0.0791866179419003
LEPRSFLNK	9	Unmodified	_LEPRSFLNK_					0	0	0		nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;OSBPL5|p.P786Sfs*56|1|0.44|ENSG00000021762|chr11:3090600-3090601|-/CT|frameshift_variant;ENSG00000021762|ENST00000263650|OSBPL5;ENST00000534491.5_1_11:3114755-3187956:-|nuORF	nc|ENSG00000021762|Q9H0X9-3|OSBPL5	nc|ENSG00000021762|Q9H0X9-3|OSBPL5	MULTI-MSMS	OvCa99_classI_Rep5	1	552.3159790039062	2	552.314023	1102.61349	1.2046	0.00066533	0.60198	0.00033248	1.8066	0.0009978	552.3143628683727	113.94	1.1423	113.94	113.42	114.56	0					56	26	4	0	0	0	0.023304	1	13017	13017		143.11	9.2942	1	2760300			29073	1028	23850	23877	32313	32313					0.06629120742968553
LEPRSFLNK	9	Unmodified	_LEPRSFLNK_					0	0	0		nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;OSBPL5|p.P786Sfs*56|1|0.44|ENSG00000021762|chr11:3090600-3090601|-/CT|frameshift_variant;ENSG00000021762|ENST00000263650|OSBPL5;ENST00000534491.5_1_11:3114755-3187956:-|nuORF	nc|ENSG00000021762|Q9H0X9-3|OSBPL5	nc|ENSG00000021762|Q9H0X9-3|OSBPL5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	552.314023	1102.61349	0.84167	0.00046487	-1.0964	-0.00060557	-0.25475	-0.0001407	552.3133233003624	114.15	0.73958	114.03	113.76	114.5	-0.11777	0.0067362	-0.0009504	NaN	143.11	46	14	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76984			29074	1028	23850	23877							0.06629120742968553
LEPRSFLNK	9	Unmodified	_LEPRSFLNK_					0	0	0		nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;OSBPL5|p.P786Sfs*56|1|0.44|ENSG00000021762|chr11:3090600-3090601|-/CT|frameshift_variant;ENSG00000021762|ENST00000263650|OSBPL5;ENST00000534491.5_1_11:3114755-3187956:-|nuORF	nc|ENSG00000021762|Q9H0X9-3|OSBPL5	nc|ENSG00000021762|Q9H0X9-3|OSBPL5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	552.314023	1102.61349	-0.72056	-0.00039797	0.40251	0.00022231	-0.31804	-0.00017566	552.3139496192568	115.12	0.83897	114.07	113.75	114.59	-1.055	0.042587	0.00070537	NaN	143.11	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72673			29075	1028	23850	23877							0.06629120742968553
LEPRSFLNK	9	Unmodified	_LEPRSFLNK_					0	0	0		nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;OSBPL5|p.P786Sfs*56|1|0.44|ENSG00000021762|chr11:3090600-3090601|-/CT|frameshift_variant;ENSG00000021762|ENST00000263650|OSBPL5;ENST00000534491.5_1_11:3114755-3187956:-|nuORF	nc|ENSG00000021762|Q9H0X9-3|OSBPL5	nc|ENSG00000021762|Q9H0X9-3|OSBPL5	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	552.314023	1102.61349	0.31671	0.00017492	-0.55615	-0.00030717	-0.23944	-0.00013225	552.3134518089612	115.46	0.98942	114.07	113.77	114.76	-1.3977	0.039174	-0.00035359	NaN	143.11	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58816			29076	1028	23850	23877							0.06629120742968553
LEPRWAQP	8	Unmodified	_LEPRWAQP_					0	0	0			REV__ENST00000570080.1_1_16:23464085-23464412:+|nuORF	REV__ENST00000570080.1_1_16:23464085-23464412:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.7728271484375	2	498.766709	995.518865	0.64791	0.00032316	3.3061	0.001649	3.954	0.0019721	498.7689493070314	158.98	0.24582	158.98	158.89	159.14	0					6	4	2	0	0	0	0.028476	1	18624	18624		40.573	17.53	1	28958	+		29077	27734	23851	23878	32314	32314					0.020926069916072265
LEPSTISVSV	10	Unmodified	_LEPSTISVSV_					0	0	0		ENST00000441493.6_1_22:18385495-18387514:-|nuORF	ENST00000441493.6_1_22:18385495-18387514:-|nuORF	ENST00000441493.6_1_22:18385495-18387514:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.27099609375	2	516.284597	1030.55464	-1.0146	-0.00052382	3.6916	0.0019059	2.677	0.0013821	516.2858704304633	81.923	0.7209	79.24	78.963	79.684	-2.6829					22	14	2	0	0	0	0.026956	1	6783	6783		26.693	0	1	64959			29078	11930	23852	23879	32315	32315					0.04058599657969353
LEPSTISVSV	10	Unmodified	_LEPSTISVSV_					0	0	0		ENST00000441493.6_1_22:18385495-18387514:-|nuORF	ENST00000441493.6_1_22:18385495-18387514:-|nuORF	ENST00000441493.6_1_22:18385495-18387514:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	516.284597	1030.55464	0.54662	0.00028221	4.0329	0.0020821	4.5795	0.0023643	516.2843089618124	80.986	1.6711	79.338	78.715	80.386	-1.6485	0.103	0.00023709	NaN	34.173	64	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41110			29079	11930	23852	23879							0.04058599657969353
LEPSTISVSV	10	Unmodified	_LEPSTISVSV_					0	0	0		ENST00000441493.6_1_22:18385495-18387514:-|nuORF	ENST00000441493.6_1_22:18385495-18387514:-|nuORF	ENST00000441493.6_1_22:18385495-18387514:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	516.284597	1030.55464	0.095104	4.9101E-05	3.6685	0.001894	3.7636	0.0019431	516.2846270001958	81.449	1.0126	79.126	78.645	79.658	-2.3226	-0.1084	-0.00013913	NaN	34.173	55	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62437			29080	11930	23852	23879							0.04058599657969353
LEPTSHRPVM	10	Unmodified	_LEPTSHRPVM_					0	0	0		ENST00000377990.6_2_2:65296717-65296849:+|nuORF	ENST00000377990.6_2_2:65296717-65296849:+|nuORF	ENST00000377990.6_2_2:65296717-65296849:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.3038330078125	2	583.802965	1165.59138	0.70356	0.00041074	0.91075	0.0005317	1.6143	0.00094244	583.803212792063	150.84	1.2106	150.84	150.34	151.55	0					38	23	2	0	0	0	0.026802	1	17667	17667		26.693	0	1	20266			29081	11096	23853	23880	32316	32316					0.015205730028583275
LEPVASPAKKP	11	Unmodified	_LEPVASPAKKP_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	OvCa99_classI_Rep5	1	568.8411865234375	2	568.837331	1135.66011	2.223	0.0012645	3.6341	0.0020672	5.8571	0.0033318	568.8392867526536	85.837	1.2575	85.837	85.544	86.801	0					63	30	3	0	0	0	0.21979	1	9011	9011		77.318	5.4401	1	4366200			29082	7740	23854	23881	32317	32317					0.09770560574224874
LEPWFSAP	8	Unmodified	_LEPWFSAP_					0	0	0		L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|357|2|anti-sense;L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|217|1|anti-sense;L1PA3_dup1152|chr2:117623254-117629278:+|1.1606400945596698|0.0841542146032081|3.79|394.0|347|3|anti-sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.448906025747238|0.1317034148076854|3.46|417.0|274|2|anti-sense;L1PA2_dup23|chr1:43114528-43120516:-|1.3533449411662286|0.3152228216366226|2.1|404.0|340|3|anti-sense;L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|272|2|anti-sense;chr8:91197524-91200613|99|17.84|0.22|6.31|+|1|TE_info:L1PA3,L1PA3_dup5484,L1,LINE,donor,-,91191845,91197524|None,LRRC69|106;chr6:109250991-109254448|247|18.56|0.13|7.16|+|1|TE_info:L1PA2,L1PA2_dup2028,L1,LINE,donor,-,109245219,109250991|None,CCDC162P|98;chr3:195070111-195087933|297|11.33|0.27|5.37|-|2|TE_info:L1PA2,L1PA2_dup1050,L1,LINE,donor,+,195087933,195093677|XXYLT1,None|59;chr3:189023348-189023750|247|10.3|0.01|9.43|+|2|TE_info:L1PA3,L1PA3_dup2320,L1,LINE,donor,-,189017230,189023348|None,TPRG1|98;chr15:53523322-53540662|224|18.24|0.17|6.76|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|96	L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|357|2|anti-sense	L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|357|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	473.2837219238281	2	473.737086	945.459619	0.23473	0.0001112	-3.9879	-0.0018892	-3.7532	-0.001778	473.7372934113931	86.843	0.15721	85.412	85.281	85.438	-1.4311					4	2	2	0	0	0	0.028476	1	7552	7552		33.516	3.0119	1	4589.8			29083	357	23855	23882	32318	32318					-0.01529289022573721
LEPWPRTL	8	Unmodified	_LEPWPRTL_					0	0	0			REV__ENSG00000154358|ENST00000680850|OBSCN	REV__ENSG00000154358|ENST00000680850|OBSCN	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.31256103515625	2	506.284734	1010.55492	-0.61458	-0.00031115	-3.8014	-0.0019246	-4.416	-0.0022358	506.2828645731385	53.659	0.72827	53.659	53.087	53.815	0					20	16	2	0	0	0	0.028476	1	4271	4271		23.042	3.939	1	438790	+		29084	20380	23856	23883	32319	32319					0.050060641684808616
LEPYERDHA	9	Unmodified	_LEPYERDHA_					0	0	0		ENSG00000105202|ENST00000221801|FBL;ENSG00000188573|ENST00000338333|FBLL1;DNAJB6-FBL|1|fusion	ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	MULTI-SECPEP	OvCa9_classI_Rep2	2	565.3085327148438	2	565.26727	1128.51999	0.28922	0.00016349	1.3691	0.00077392	1.6583	0.00093741	565.2678110613048	96.904	0.63699	95.945	95.629	96.266	-0.95857					16	12	2	0	0	0	0.027342	1	8777	8777		90.37	10.919	1	19717			29085	2429	23857	23884	32320	32320					-0.03913223430140533
LEQDQEQLL	9	Unmodified	_LEQDQEQLL_					0	0	0			REV__nc|ENSG00000198901|O43663-3|PRC1	REV__nc|ENSG00000198901|O43663-3|PRC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.8536987304688	2	558.282586	1114.55062	0.71099	0.00039693	-3.38	-0.001887	-2.669	-0.0014901	558.7833929447239	114.79	0.50696	114.79	114.42	114.93	0					15	10	2	0	0	0	0.027462	1	13078	13078		29.15	0	1	61159	+		29086	23090	23858	23885	32321	32321					-0.0020748983574776503
LEQENSELE	9	Unmodified	_LEQENSELE_					0	0	0		nc|ENSG00000115355|Q3V6T2-5|CCDC88A;nc|ENSG00000115355|Q3V6T2-4|CCDC88A;nc|ENSG00000115355|Q3V6T2-2|CCDC88A;nc|ENSG00000115355|Q3V6T2-3|CCDC88A;ENSG00000115355|ENST00000436346|CCDC88A	nc|ENSG00000115355|Q3V6T2-5|CCDC88A	nc|ENSG00000115355|Q3V6T2-5|CCDC88A	MULTI-SECPEP	OvCa9_classI_Rep2	2	545.829345703125	2	545.748576	1089.4826	-0.09763	-5.3282E-05	1.8221	0.0009944	1.7245	0.00094112	546.2505124249036	95.94	0.14973	94.912	94.813	94.963	-1.0281					4	2	2	0	0	0	0.027462	1	8637	8637		45.972	0.020292	1	3499.7			29087	3089	23859	23886	32322	32322					-0.058563594864153856
LEQFHQLSQV	10	Unmodified	_LEQFHQLSQV_					0	0	0		nc|ENSG00000176248|Q9UJX6-2|ANAPC2;ENSG00000176248|ENST00000323927|ANAPC2	nc|ENSG00000176248|Q9UJX6-2|ANAPC2	nc|ENSG00000176248|Q9UJX6-2|ANAPC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	614.2971801757812	2	614.81967	1227.62479	1.276	0.00078451	0.42859	0.0002635	1.7046	0.001048	615.3230270360227	138.76	0.23755	138.76	138.64	138.88	0					7	4	2	0	0	0	0.026994	1	16193	16193		40.778	0	1	25832			29088	7594	23860	23887	32323	32323					0.02007898046417722
LEQFSALLKT	10	Unmodified	_LEQFSALLKT_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;SYNE1|p.A5284Rfs*31|1|0.11|ENSG00000131018|chr6:152323546-152323547|-/C|frameshift_variant;SYNE1|p.T4511Lfs*10|1|0.03|ENSG00000131018|chr6:152331155-152331155|G/-|frameshift_variant;SYNE1|p.R3674Tfs*53|1|0.12|ENSG00000131018|chr6:152353650-152353651|-/ATAATTGCTTCAAAAATTTGAG|frameshift_variant;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;nc|ENSG00000131018|Q8NF91-12|SYNE1;ENST00000471834.1_1_6:152690575-152702320:-|nuORF	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.284423828125	2	575.329339	1148.64412	2.079	0.0011961	3.6525	0.0021014	5.7315	0.0032975	575.3315819094249	97.041	1.0655	97.041	96.501	97.566	0					41	24	3	0	0	0	0.026714	1	10636	10636		28.081	5.039	1	461080			29089	4036	23861	23888	32324	32324					0.07574854337326542
LEQHKDLLQN	10	Unmodified	_LEQHKDLLQN_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;SYNE1|p.A5284Rfs*31|1|0.11|ENSG00000131018|chr6:152323546-152323547|-/C|frameshift_variant;SYNE1|p.T4511Lfs*10|1|0.03|ENSG00000131018|chr6:152331155-152331155|G/-|frameshift_variant;SYNE1|p.R3674Tfs*53|1|0.12|ENSG00000131018|chr6:152353650-152353651|-/ATAATTGCTTCAAAAATTTGAG|frameshift_variant;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;nc|ENSG00000131018|Q8NF91-6|SYNE1;SYNE1|p.V2560Dfs*2|1|0.09|ENSG00000131018|chr6:152395549-152395550|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-5|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	OvCa99_classI_Rep5	1	619.3283081054688	2	619.330402	1236.64625	1.3565	0.00084015	-3.651	-0.0022612	-2.2945	-0.001421	619.32823320943	118.86	0.61533	118.86	118.58	119.19	0					29	12	3	0	0	0	0.47142	1	13629	13629		58.23	1.7961	1	336990			29090	4036	23862	23889	32325	32325					0.03739283075151434
LEQIERRH	8	Unmodified	_LEQIERRH_					0	0	0			REV__nc|ENSG00000111879|Q8NB25-3|FAM184A	REV__nc|ENSG00000111879|Q8NB25-3|FAM184A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.3574829101562	2	540.799072	1079.58359	0.25255	0.00013658	-1.6931	-0.00091565	-1.4406	-0.00077907	540.7976190604332	97.264	0.65961	94.885	94.708	95.368	-2.3786					17	12	2	0	0	0	0.028476	1	8621	8621		11.511	1.8054	1	28607	+		29091	18067	23863	23890	32326	32326					0.046981817976075035
LEQIKEII	8	Unmodified	_LEQIKEII_					0	0	0			REV__tr|A0A7D6VTC0|A0A7D6VTC0_9CLOTsuccinyl-diaminopimelatedesuccinylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02200PE=4SV=1	REV__tr|A0A7D6VTC0|A0A7D6VTC0_9CLOTsuccinyl-diaminopimelatedesuccinylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02200PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	493.3009948730469	2	493.30005	984.585547	-1.4296	-0.00070521	-0.69429	-0.00034249	-2.1239	-0.0010477	493.2995518926899	92.136	1.2761	90.112	89.89	91.166	-2.0241					51	26	2	0	0	0	0.48084	1	5814	5814		79.451	0	1	1209500	+		29092	31591	23864	23891	32327	32327					0.09263797762855575
LEQIKKAFV	9	Unmodified	_LEQIKKAFV_					0	0	0			REV__tr|A0A553SIX6|A0A553SIX6_NIACIManganesecatalasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15735PE=3SV=1	REV__tr|A0A553SIX6|A0A553SIX6_NIACIManganesecatalasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15735PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	538.3264770507812	2	538.329142	1074.64373	-5.5921	-0.0030104	1.7538	0.0009441	-3.8384	-0.0020663	538.3299819955096	158.56	1.0599	158.33	158.09	159.15	-0.22697					66	21	5	0	0	0	0.51865	1	16105	16105		40.778	6.6056	1	327100	+		29093	29941	23865	23892	32328	32328					0.10939479408125408
LEQIQISPAE	10	Unmodified	_LEQIQISPAE_					0	0	0			REV__ENSG00000136021|ENST00000360820|SCYL2	REV__ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	OvCa99_classI_Rep5	1	564.3027954101562	2	564.300778	1126.587	3.2073	0.0018099	-1.8096	-0.0010212	1.3977	0.00078871	564.2996539792841	99.187	0.56969	99.187	98.877	99.447	0					33	13	3	0	0	0	0.45822	1	10950	10950		60.118	0.18749	1	5896800	+		29094	19351	23866	23893	32329	32329					0.02877387060948422
LEQISSLCSK	10	Unmodified	_LEQISSLCSK_					0	0	0		ENSG00000172167|ENST00000305949|MTBP;ENST00000522449.1_1_8:121475935-121483203:+|nuORF	ENSG00000172167|ENST00000305949|MTBP	ENSG00000172167|ENST00000305949|MTBP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.3228759765625	2	554.289356	1106.56416	-0.19027	-0.00010547	3.8659	0.0021428	3.6756	0.0020374	554.2907007466856	51.502	1.4091	48.328	47.821	49.23	-3.1734					56	27	3	0	0	0	0.026551	1	3023	3023		51.193	0	1	54018			29095	7271	23867	23894	32330	32330					0.015140446718305611
LEQKDRVLE	9	Unmodified	_LEQKDRVLE_					0	0	0		ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A	ENSG00000166963|ENST00000300231|MAP1A	ENSG00000166963|ENST00000300231|MAP1A	MULTI-MSMS	OvCa9_classI_Rep2	2	565.3135375976562	2	565.31422	1128.61389	-0.33863	-0.00019143	-0.4419	-0.00024981	-0.78053	-0.00044124	565.3146090333048	59.402	2.1276	56.622	55.838	57.966	-2.7801					203	40	7	0	0	0	0.045281	1	4323	4323		122.18	8.7644	1	1937000			29096	6741	23868	23895	32331	32331					0.054724956721202034
LEQKEDTIII	10	Unmodified	_LEQKEDTIII_					0	0	0		tr|A0A7D6VRU4|A0A7D6VRU4_9CLOTDNA-(apurinicorapyrimidinicsite)lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20295PE=3SV=1	tr|A0A7D6VRU4|A0A7D6VRU4_9CLOTDNA-(apurinicorapyrimidinicsite)lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20295PE=3SV=1	tr|A0A7D6VRU4|A0A7D6VRU4_9CLOTDNA-(apurinicorapyrimidinicsite)lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20295PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	601.3084716796875	2	601.337361	1200.66017	3.2329	0.001944	-3.3573	-0.0020189	-0.12447	-7.4847E-05	601.3352915238002	121.02	0.78184	119.99	119.75	120.54	-1.0271					24	14	2	0	0	0	0.026653	1	9277	9277		67.494	7.5629	1	34220			29097	34956	23869	23896	32332	32332					0.06786515783574032
LEQKEDTIII	10	Unmodified	_LEQKEDTIII_					0	0	0		tr|A0A7D6VRU4|A0A7D6VRU4_9CLOTDNA-(apurinicorapyrimidinicsite)lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20295PE=3SV=1	tr|A0A7D6VRU4|A0A7D6VRU4_9CLOTDNA-(apurinicorapyrimidinicsite)lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20295PE=3SV=1	tr|A0A7D6VRU4|A0A7D6VRU4_9CLOTDNA-(apurinicorapyrimidinicsite)lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20295PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	601.337361	1200.66017	0.15206	9.1441E-05	-0.31726	-0.00019078	-0.16519	-9.9336E-05	601.3368989941054	121.39	0.71902	120.05	119.74	120.46	-1.3479	0.021129	0.0018737	NaN	67.494	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33676			29098	34956	23869	23896							0.06786515783574032
LEQKEHPTI	9	Unmodified	_LEQKEHPTI_					0	0	0		tr|A0A553SSW9|A0A553SSW9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_03895PE=3SV=1	tr|A0A553SSW9|A0A553SSW9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_03895PE=3SV=1	tr|A0A553SSW9|A0A553SSW9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_03895PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	547.7958984375	2	547.795663	1093.57677	0.050847	2.7854E-05	-0.6998	-0.00038335	-0.64895	-0.00035549	547.7953012844869	106.44	1.5786	106.13	105.78	107.36	-0.30836					100	31	6	0	0	0	0.31747	1	9943	9943		60.972	0	1	280320			29099	34428	23870	23897	32333	32333					0.03372824126381602
LEQKLRRL	8	Unmodified	_LEQKLRRL_					0	0	0			REV__ENSG00000197852|ENST00000357260|INKA2	REV__ENSG00000197852|ENST00000357260|INKA2	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.3157958984375	2	528.337833	1054.66111	-1.6379	-0.00086538	3.613	0.0019089	1.9751	0.0010435	528.3412502841287	101.6	0.24715	100.84	100.77	101.01	-0.76401					6	4	2	0	0	0	0.028476	1	9318	9318		38.806	0	1	8297	+		29100	22956	23871	23898	32334	32334					0.13596819733811571
LEQKLTSI	8	Unmodified	_LEQKLTSI_					0	0	0		ENSG00000117834|ENST00000438567|SLC5A9;nc|ENSG00000117834|Q2M3M2-3|SLC5A9;nc|ENSG00000117834|Q2M3M2-2|SLC5A9	ENSG00000117834|ENST00000438567|SLC5A9	ENSG00000117834|ENST00000438567|SLC5A9	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.27630615234375	2	466.276575	930.538597	4.0852	0.0019048	-3.922	-0.0018287	0.16318	7.6087E-05	466.274603956858	131.65	0.78232	130.15	129.91	130.69	-1.5015					20	15	2	0	0	0	0.58851	1	12662	12662		66.429	0	1	36596			29101	3279	23872	23899	32335	32335					0.07054938211717854
LEQKVASLEL	10	Unmodified	_LEQKVASLEL_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;SYNE1|p.A5284Rfs*31|1|0.11|ENSG00000131018|chr6:152323546-152323547|-/C|frameshift_variant;ENST00000490135.6_1_6:152637953-152655276:-|nuORF	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	OvCa99_classI_Rep5	1	565.3248901367188	2	565.326796	1128.63904	-0.14575	-8.2398E-05	0.66741	0.0003773	0.52165	0.00029491	565.3270314467675	55.355	1.028	55.355	55.107	56.135	0					75	24	5	0	0	0	0.17251	1	4550	4550		98.582	0	1	3605000			29102	4036	23873	23900	32336	32336					0.07986550474697651
LEQLASVHVC	10	Unmodified	_LEQLASVHVC_					0	0	0			REV__ENST00000454791.1_1_7:75518014-75518107:+|nuORF	REV__ENST00000454791.1_1_7:75518014-75518107:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.830322265625	2	549.784241	1097.55393	-0.91798	-0.00050469	-2.747	-0.0015103	-3.665	-0.002015	549.7826024857173	81.606	2.8744	78.896	77.466	80.341	-2.7106					105	58	3	0	0	0	0.024917	1	6878	6878		122.18	5.2724	1	136960	+		29103	26010	23874	23901	32337	32337					0.009054817372543766
LEQLHTSI	8	Unmodified	_LEQLHTSI_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OvCa99_classI_Rep5	1	470.75970458984375	2	470.758549	939.502546	2.1043	0.00099061	0.02178	1.0253E-05	2.1261	0.0010009	470.7584363451432	85.262	0.49754	85.262	85.004	85.502	0					21	11	2	0	0	0	0.35821	1	8942	8942		96.19	5.4138	1	1261000	+		29104	16701	23875	23902	32338	32338					0.030374810348689607
LEQLHTSI	8	Unmodified	_LEQLHTSI_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	470.758549	939.502546	2.1043	0.00099061	0.02178	1.0253E-05	2.1261	0.0010009	470.7584363451432	85.262	0.49754	85.262	85.004	85.502	0	0	0	NaN	96.19	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1261000	+		29105	16701	23875	23902							0.030374810348689607
LEQLKAQLVA	10	Unmodified	_LEQLKAQLVA_					0	0	0		ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	MULTI-SECPEP	OvCa9_classI_Rep2	2	557.3167724609375	2	556.837331	1111.66011	-1.8387	-0.0010239	-0.57436	-0.00031983	-2.4131	-0.0013437	556.8364849271569	35.985	0.24799	33.275	33.152	33.4	-2.7097					6	4	2	0	0	0	0.026956	1	1515	1515		42.396	3.1433	1	7233.5			29106	6650	23876	23903	32339	32339					0.108745605742115
LEQLQVLTL	9	Unmodified	_LEQLQVLTL_					0	0	0		LRRN4|p.T324Nfs*97|1|0.13|ENSG00000125872|chr20:6044570-6044571|-/GTGCTTCTCTTTGGAGGGAATGTGGGGT|frameshift_variant;ENSG00000125872|ENST00000378858|LRRN4	LRRN4|p.T324Nfs*97|1|0.13|ENSG00000125872|chr20:6044570-6044571|-/GTGCTTCTCTTTGGAGGGAATGTGGGGT|frameshift_variant	LRRN4|p.T324Nfs*97|1|0.13|ENSG00000125872|chr20:6044570-6044571|-/GTGCTTCTCTTTGGAGGGAATGTGGGGT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	528.8184204101562	2	528.818607	1055.62266	-1.152	-0.00060918	1.1681	0.00061773	0.016157	8.544E-06	528.8190456843956	137.71	0.85484	137.48	137.27	138.13	-0.22697					33	17	3	0	0	0	0.60342	1	13713	13713		31.53	0	1	54481			29107	3748	23877	23904	32340	32340					0.09707469308614236
LEQLQVLTL	9	Unmodified	_LEQLQVLTL_					0	0	0		LRRN4|p.T324Nfs*97|1|0.13|ENSG00000125872|chr20:6044570-6044571|-/GTGCTTCTCTTTGGAGGGAATGTGGGGT|frameshift_variant;ENSG00000125872|ENST00000378858|LRRN4	LRRN4|p.T324Nfs*97|1|0.13|ENSG00000125872|chr20:6044570-6044571|-/GTGCTTCTCTTTGGAGGGAATGTGGGGT|frameshift_variant	LRRN4|p.T324Nfs*97|1|0.13|ENSG00000125872|chr20:6044570-6044571|-/GTGCTTCTCTTTGGAGGGAATGTGGGGT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	528.8184814453125	2	528.818607	1055.62266	-1.8461	-0.00097626	1.3839	0.00073181	-0.46227	-0.00024446	528.8193433242341	138.41	0.88116	137.35	137.05	137.93	-1.0595					31	17	2	0	0	0	0.57283	1	11312	11312		35.152	2.3396	1	41430			29108	3748	23877	23904	32341	32341					0.09707469308614236
LEQLRPVTVL	10	Unmodified	_LEQLRPVTVL_					0	0	0		nc|ENSG00000169891|Q8NFH8-4|REPS2;ENSG00000169891|ENST00000357277|REPS2;ENST00000470686.1_1_X:17156958-17165601:+|nuORF;ENST00000469714.1_1_X:17092694-17165601:+|nuORF	nc|ENSG00000169891|Q8NFH8-4|REPS2	nc|ENSG00000169891|Q8NFH8-4|REPS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3570556640625	2	584.358431	1166.70231	-0.5033	-0.0002941	-2.654	-0.0015509	-3.1573	-0.001845	584.3567763295431	142.42	4.015	140.98	138.81	142.83	-1.4427					242	77	4	0	0	0	0.6104	1	13967	13967		40.778	5.1599	1	214670			29109	7048	23878	23905	32342	32342					0.1256253598260173
LEQMQKVK	8	Unmodified	_LEQMQKVK_					0	0	0		ENSG00000197208|ENST00000200652|SLC22A4	ENSG00000197208|ENST00000200652|SLC22A4	ENSG00000197208|ENST00000200652|SLC22A4	MULTI-SECPEP	OvCa9_classI_Rep2	2	502.82830810546875	2	502.283877	1002.5532	-0.74438	-0.00037389	-2.3645	-0.0011877	-3.1089	-0.0015616	502.2824713722204	97.874	1.3754	96.916	96.217	97.592	-0.95857					45	27	3	0	0	0	0.028476	1	8830	8830		50.025	0	1	37126			29110	8689	23879	23906	32343	32343					0.05202687088217317
LEQMQPAPG	9	Unmodified	_LEQMQPAPG_					0	0	0			REV__ENST00000341500.9_1_19:7184362-7184500:-|nuORF	REV__ENST00000341500.9_1_19:7184362-7184500:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.293701171875	2	485.73676	969.458967	1.9349	0.00093986	1.2261	0.00059558	3.1611	0.0015354	485.7370600301667	136.6	0.52512	136.6	136.35	136.87	0					21	10	3	0	0	0	0.027433	1	15927	15927		34.173	3.6689	1	67001	+		29111	24636	23880	23907	32344	32344					-0.026984517339201375
LEQNIITK	8	Unmodified	_LEQNIITK_					0	0	0			REV__tr|A0A7D6ZXF7|A0A7D6ZXF7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13115PE=4SV=1	REV__tr|A0A7D6ZXF7|A0A7D6ZXF7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13115PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.22796630859375	2	479.782025	957.549496	-0.11649	-5.5888E-05	0.38009	0.00018236	0.26361	0.00012647	479.7818978302579	105.72	0.70953	103.7	103.5	104.21	-2.0161					30	13	3	0	0	0	0.028476	1	9660	9660		19.104	0	1	33842	+		29112	32330	23881	23908	32345	32345					0.0690234058599799
LEQNIITK	8	Unmodified	_LEQNIITK_					0	0	0			REV__tr|A0A7D6ZXF7|A0A7D6ZXF7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13115PE=4SV=1	REV__tr|A0A7D6ZXF7|A0A7D6ZXF7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13115PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	479.782025	957.549496	-0.83856	-0.00040233	1.0793	0.00051782	0.24071	0.00011549	479.78225155796355	104.34	0.99084	103.77	103.32	104.32	-0.57639	0.038617	0.00078227	NaN	13.454	33	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31468	+		29113	32330	23881	23908							0.0690234058599799
LEQNIITK	8	Unmodified	_LEQNIITK_					0	0	0			REV__tr|A0A7D6ZXF7|A0A7D6ZXF7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13115PE=4SV=1	REV__tr|A0A7D6ZXF7|A0A7D6ZXF7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13115PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	479.782025	957.549496	0.72822	0.00034939	-0.36759	-0.00017636	0.36063	0.00017302	479.7815383701523	105.07	0.83385	103.72	103.42	104.25	-1.3482	-0.0098947	-0.00060609	NaN	13.454	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29870	+		29114	32330	23881	23908							0.0690234058599799
LEQNKKILL	9	Unmodified	_LEQNKKILL_					0	0	0			REV__ENST00000406462.6_1_1:109427965-109428025:+|nuORF	REV__ENST00000406462.6_1_1:109427965-109428025:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.830322265625	2	549.847699	1097.68084	-0.45123	-0.00024811	3.1465	0.0017301	2.6952	0.001482	549.8493169232277	83.066	0.4876	80.384	80.173	80.66	-2.6829					12	9	2	0	0	0	0.023563	1	6878	6878		176.09	27.1	1	40017	+		29115	25445	23882	23909	32346	32346					0.13591150953902797
LEQNKQLLL	9	Unmodified	_LEQNKQLLL_					0	0	0			REV__tr|A0A553ST07|A0A553ST07_NIACICrp/FnrfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03975PE=4SV=1	REV__tr|A0A553ST07|A0A553ST07_NIACICrp/FnrfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03975PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	549.8302612304688	2	549.829506	1097.64446	2.0083	0.0011042	-0.6702	-0.0003685	1.3381	0.00073573	549.8291049728731	79.959	3.6419	79.959	79.436	83.078	0					224	87	5	0	0	0	0.0086488	2	8171	8171;8201		176.09	13.829	1	44234000	+		29116	30901	23883	23910	32347;32348	32347					0.09954274057213297
LEQNKQLLL	9	Unmodified	_LEQNKQLLL_					0	0	0			REV__tr|A0A553ST07|A0A553ST07_NIACICrp/FnrfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03975PE=4SV=1	REV__tr|A0A553ST07|A0A553ST07_NIACICrp/FnrfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03975PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	549.8285522460938	2	549.829506	1097.64446	0.80067	0.00044023	-1.6255	-0.00089376	-0.82486	-0.00045353	549.8286388284898	82.164	4.5681	80.515	79.767	84.335	-1.6485					186	90	5	0	0	0	0.049969	1	6975	6975		118.74	5.3315	1	3206100	+		29117	30901	23883	23910	32349	32349					0.09954274057213297
LEQNKQLLL	9	Unmodified	_LEQNKQLLL_					0	0	0			REV__tr|A0A553ST07|A0A553ST07_NIACICrp/FnrfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03975PE=4SV=1	REV__tr|A0A553ST07|A0A553ST07_NIACICrp/FnrfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03975PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	549.8299560546875	2	549.829506	1097.64446	-1.4364	-0.00078979	0.25665	0.00014112	-1.1798	-0.00064867	549.8296566613044	82.508	4.9298	80.211	79.735	84.665	-2.2963					199	100	5	0	0	0	0.0080801	1	4667	4667		201.49	1.3309	1	6178900	+		29118	30901	23883	23910	32350	32350					0.09954274057213297
LEQNKQLLL	9	Unmodified	_LEQNKQLLL_					0	0	0			REV__tr|A0A553ST07|A0A553ST07_NIACICrp/FnrfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03975PE=4SV=1	REV__tr|A0A553ST07|A0A553ST07_NIACICrp/FnrfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03975PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.830322265625	2	549.829506	1097.64446	-0.33948	-0.00018666	-0.54041	-0.00029713	-0.8799	-0.00048379	549.8292171061989	83.08	2.9395	80.397	79.733	82.673	-2.6829					155	60	5	0	0	0	0.0086488	2	6878	6878;6989		176.09	9.4083	1	5921500	+		29119	30901	23883	23910	32351;32352	32351					0.09954274057213297
LEQNRFGRL	9	Unmodified	_LEQNRFGRL_					0	0	0		nc|ENSG00000007516|O94812-7|BAIAP3;nc|ENSG00000007516|O94812-5|BAIAP3;nc|ENSG00000007516|O94812-3|BAIAP3;ENSG00000007516|ENST00000426824|BAIAP3;nc|ENSG00000007516|O94812-2|BAIAP3;nc|ENSG00000007516|O94812|BAIAP3	nc|ENSG00000007516|O94812-7|BAIAP3	nc|ENSG00000007516|O94812-7|BAIAP3	MULTI-SECPEP	OvCa9_classI_Rep2	2	566.3028564453125	2	566.814722	1131.61489	-1.9189	-0.0010877	-4.0669	-0.0023052	-5.9859	-0.0033929	566.8124233583629	37.97	0.44459	35.26	35.124	35.568	-2.7097					11	8	2	0	0	0	0.027462	1	1776	1776		40.778	2.9666	1	16383			29120	903	23884	23911	32353	32353					0.05434754831708233
LEQQNKILL	9	Unmodified	_LEQQNKILL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa99_classI_Rep5	1	549.826904296875	2	549.829506	1097.64446	2.0083	0.0011042	-0.6702	-0.0003685	1.3381	0.00073573	549.8291049728731	79.959	3.6419	79.959	79.436	83.078	0					224	87	5	0	0	0	0.053172	1	8142	8142		116.9	3.492	1	44234000			29121	1049	23885	23912	32354	32354					0.09954274057213297
LEQQNKILL	9	Unmodified	_LEQQNKILL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa9_classI_Rep2	2	549.8291625976562	2	549.829506	1097.64446	0.80067	0.00044023	-1.6255	-0.00089376	-0.82486	-0.00045353	549.8286388284898	82.164	4.5681	80.515	79.767	84.335	-1.6485					186	90	5	0	0	0	0.0078217	2	6993	6981;6993		180.93	9.5412	1	3206100			29122	1049	23885	23912	32355;32356	32356					0.09954274057213297
LEQQNKILL	9	Unmodified	_LEQQNKILL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa9_classI_Rep3	3	549.8303833007812	2	549.829506	1097.64446	-1.4364	-0.00078979	0.25665	0.00014112	-1.1798	-0.00064867	549.8296566613044	82.508	4.9298	80.211	79.735	84.665	-2.2963					199	100	5	0	0	0	0.0069927	7	4649	4639;4643;4649;4655;4674;4680;4718		195.81	9.7248	1	6178900			29123	1049	23885	23912	32357;32358;32359;32360;32361;32362;32363	32359					0.09954274057213297
LEQQNKILL	9	Unmodified	_LEQQNKILL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.8300170898438	2	549.829506	1097.64446	-0.33948	-0.00018666	-0.54041	-0.00029713	-0.8799	-0.00048379	549.8292171061989	83.08	2.9395	80.397	79.733	82.673	-2.6829					155	60	5	0	0	0	0.0085934	3	6913	6901;6913;6964		176.41	9.6282	1	5921500			29124	1049	23885	23912	32364;32365;32366	32365					0.09954274057213297
LEQQQLAEQW	10	Unmodified	_LEQQQLAEQW_					0	0	0		ENST00000480336.1_1_1:32930670-32936265:+|nuORF	ENST00000480336.1_1_1:32930670-32936265:+|nuORF	ENST00000480336.1_1_1:32930670-32936265:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	424.8811950683594	3	424.878815	1271.61462	-0.23158	-9.8394E-05	3.5113	0.0014919	3.2797	0.0013935	424.88014451964415	55.217	1.159	55.217	54.935	56.094	0					61	27	5	0	0	0	0.48198	1	4496	4496		51.528	0	1	2383900			29125	12522	23886	23913	32367	32367					-0.010327096787932533
LEQRIIGV	8	Unmodified	_LEQRIIGV_					0	0	0		ENSG00000067248|ENST00000251636|DHX29;DHX29|p.G1201Dfs*33|1|0.04|ENSG00000067248|chr5:55262856-55262857|-/GTAAT|frameshift_variant;ENST00000504778.5_1_5:54579003-54603452:-|nuORF	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	MULTI-MSMS	OvCa99_classI_Rep5	1	464.2845458984375	2	464.284734	926.554916	1.7481	0.00081162	0.26283	0.00012203	2.0109	0.00093365	464.28473395370236	93.697	1.4373	93.697	93.468	94.905	0					69	33	4	0	0	0	0.57734	1	10157	10157		68.787	8.6686	1	12732000			29126	1373	23887	23914	32368	32368					0.0887006416847953
LEQTKELL	8	Unmodified	_LEQTKELL_					0	0	0			REV__ENSG00000133030|ENST00000651222|MPRIP	REV__ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	OvCa9_classI_Rep2	2	487.28125	2	487.281857	972.549162	0.41655	0.00020298	-1.4122	-0.00068813	-0.99564	-0.00048516	487.28120490509764	96.794	4.5464	95.835	95.182	99.728	-0.95857					234	91	6	0	0	0	0.23117	1	8787	8787		119.56	0	1	7137300	+		29127	19120	23888	23915	32369	32369					0.06178920866148019
LEQTKELL	8	Unmodified	_LEQTKELL_					0	0	0			REV__ENSG00000133030|ENST00000651222|MPRIP	REV__ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	OvCa9_classI_Rep3	3	487.2822570800781	2	487.281857	972.549162	-0.97507	-0.00047514	-0.017053	-8.3098E-06	-0.99213	-0.00048345	487.28188680194495	97.554	2.9535	95.794	95.362	98.316	-1.7595					206	57	6	0	0	0	0.30448	1	6552	6552		106.42	0	1	11571000	+		29128	19120	23888	23915	32370	32370					0.06178920866148019
LEQTQQRPL	9	Unmodified	_LEQTQQRPL_					0	0	0		ENSG00000177354|ENST00000374144|C10orf71	ENSG00000177354|ENST00000374144|C10orf71	ENSG00000177354|ENST00000374144|C10orf71	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.3244018554688	2	556.806562	1111.59857	0.12428	6.9202E-05	2.995	0.0016676	3.1192	0.0017368	556.8081119065562	106	1.0739	103.99	103.7	104.77	-2.0161					32	19	2	0	0	0	0.027462	1	9618	9618		24.519	11.707	1	153450			29129	7673	23889	23916	32371	32371					0.04723628874944552
LEQTQQRPL	9	Unmodified	_LEQTQQRPL_					0	0	0		ENSG00000177354|ENST00000374144|C10orf71	ENSG00000177354|ENST00000374144|C10orf71	ENSG00000177354|ENST00000374144|C10orf71	MULTI-MATCH	OvCa9_classI_Rep2	2		2	556.806562	1111.59857	0.045265	2.5204E-05	2.9623	0.0016495	3.0076	0.0016747	556.8081382939065	104.63	1.0387	104.05	103.77	104.81	-0.57639	0.019452	2.1101E-06	NaN	24.519	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158620			29130	7673	23889	23916							0.04723628874944552
LEQTQQRPL	9	Unmodified	_LEQTQQRPL_					0	0	0		ENSG00000177354|ENST00000374144|C10orf71	ENSG00000177354|ENST00000374144|C10orf71	ENSG00000177354|ENST00000374144|C10orf71	MULTI-MATCH	OvCa9_classI_Rep3	3		2	556.806562	1111.59857	-0.016275	-9.0622E-06	2.9251	0.0016287	2.9088	0.0016197	556.8081896771189	105.4	1.0937	104.05	103.62	104.72	-1.3482	0.024429	-3.9376E-05	NaN	24.519	33	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171640			29131	7673	23889	23916							0.04723628874944552
LEQVESLLPT	10	Unmodified	_LEQVESLLPT_					0	0	0			REV__ENST00000272117.7_1_1:226821008-226821062:-|nuORF	REV__ENST00000272117.7_1_1:226821008-226821062:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	564.811767578125	2	564.810979	1127.6074	1.934	0.0010924	2.4479	0.0013826	4.3819	0.0024749	564.811034538976	108.95	1.5512	108.95	108.67	110.22	0					54	34	2	0	0	0	0.19075	1	12323	12323		95.815	9.9533	1	6321500	+		29132	24074	23890	23917	32372	32372					0.04870557720778379
LEQVIAKDLLP	11	Unmodified	_LEQVIAKDLLP_					0	0	0		nc|ENSG00000171560|P02671|FGA;ENSG00000171560|ENST00000403106|FGA	nc|ENSG00000171560|P02671|FGA	nc|ENSG00000171560|P02671|FGA	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8692016601562	2	619.871371	1237.72819	-3.1788	-0.0019704	0.11399	7.0661E-05	-3.0648	-0.0018998	619.8711859647292	147.21	3.9856	146.98	144.83	148.82	-0.22696					207	79	4	0	0	0	0.70142	1	14842	14842		29.17	5.6474	1	163200			29133	7213	23891	23918	32373	32373					0.11883385434225602
LEQVIAKDLLP	11	Unmodified	_LEQVIAKDLLP_					0	0	0		nc|ENSG00000171560|P02671|FGA;ENSG00000171560|ENST00000403106|FGA	nc|ENSG00000171560|P02671|FGA	nc|ENSG00000171560|P02671|FGA	MULTI-MSMS	OvCa9_classI_Rep3	3	619.868896484375	2	619.871371	1237.72819	-3.6059	-0.0022352	0.4254	0.00026369	-3.1805	-0.0019715	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.7046	3	12985	12985;13070;13084		28.081	2.5074	1	664560			29134	7213	23891	23918	32374;32375;32376	32374					0.11883385434225602
LEQVPQDGSP	10	Unmodified	_LEQVPQDGSP_					0	0	0		nc|ENSG00000132952|Q5W0Q7-2|USPL1;USPL1|p.M998Dfs*4|1|0.03|ENSG00000132952|chr13:30659068-30659069|-/G|frameshift_variant;ENSG00000132952|ENST00000255304|USPL1	nc|ENSG00000132952|Q5W0Q7-2|USPL1	nc|ENSG00000132952|Q5W0Q7-2|USPL1	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.24951171875	2	535.261653	1068.50875	2.0905	0.0011189	-0.74218	-0.00039726	1.3483	0.00072168	535.261392160234	120.46	1.2125	119.43	119.17	120.38	-1.0271					54	23	4	0	0	0	0.027575	1	9186	9186		70.816	0	1	175840			29135	4185	23892	23919	32377	32377					-0.022760455242632815
LEQVPQDGSP	10	Unmodified	_LEQVPQDGSP_					0	0	0		nc|ENSG00000132952|Q5W0Q7-2|USPL1;USPL1|p.M998Dfs*4|1|0.03|ENSG00000132952|chr13:30659068-30659069|-/G|frameshift_variant;ENSG00000132952|ENST00000255304|USPL1	nc|ENSG00000132952|Q5W0Q7-2|USPL1	nc|ENSG00000132952|Q5W0Q7-2|USPL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.2493286132812	2	535.261653	1068.50875	-1.6148	-0.00086436	3.0016	0.0016066	1.3867	0.00074227	535.2633186016385	120.8	1.6437	119.45	119.13	120.78	-1.3479					61	31	4	0	0	0	0.026679	1	11373	11373		82.241	18.934	1	134570			29136	4185	23892	23919	32378	32378					-0.022760455242632815
LEQVRPQAI	9	Unmodified	_LEQVRPQAI_					0	0	0		ENST00000464333.5_1_22:32012607-32014401:+|nuORF	ENST00000464333.5_1_22:32012607-32014401:+|nuORF	ENST00000464333.5_1_22:32012607-32014401:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.3071899414062	2	527.306198	1052.59784	-1.4348	-0.00075656	1.1122	0.00058645	-0.32261	-0.00017011	527.3066377278022	46.073	1.9199	43	42.352	44.272	-3.0724					98	36	5	0	0	0	0.35444	1	2422	2422		56.721	6.6965	1	1025000			29137	12249	23893	23920	32379	32379					0.07364834225904815
LEQVRRLS	8	Unmodified	_LEQVRRLS_					0	0	0			REV__ENST00000470383.1_1_1:24124993-24125323:-|nuORF	REV__ENST00000470383.1_1_1:24124993-24125323:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	500.7984924316406	2	500.79854	999.582528	-4.5773	-0.0022923	4.1896	0.0020981	-0.38775	-0.00019419	500.8005489314557	149.34	2.1117	148.39	147.7	149.81	-0.9512					96	41	4	0	0	0	0.71369	1	12647	12647		40.573	0	1	278740	+		29138	26260	23894	23921	32380	32380					0.08271967428709104
LEQYIHDEI	9	Unmodified	_LEQYIHDEI_					0	0	0			REV__TCEA3|p.G302Dfs*4|1|0.07|ENSG00000204219|chr1:23387333-23387334|GC/-|frameshift_variant	REV__TCEA3|p.G302Dfs*4|1|0.07|ENSG00000204219|chr1:23387333-23387334|GC/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	580.2862548828125	2	580.285128	1158.5557	2.0598	0.0011953	0.48659	0.00028236	2.5464	0.0014776	580.2852749068858	87.761	0.87827	87.761	87.505	88.384	0					32	20	2	0	0	0	0.26076	1	9312	9312		67.494	17.958	1	1786000	+		29139	23133	23895	23922	32381	32381					-0.017231859731282384
LEQYIHDEI	9	Unmodified	_LEQYIHDEI_					0	0	0			REV__TCEA3|p.G302Dfs*4|1|0.07|ENSG00000204219|chr1:23387333-23387334|GC/-|frameshift_variant	REV__TCEA3|p.G302Dfs*4|1|0.07|ENSG00000204219|chr1:23387333-23387334|GC/-|frameshift_variant	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	580.285128	1158.5557	2.0598	0.0011953	0.48659	0.00028236	2.5464	0.0014776	580.2852749068858	87.761	0.87827	87.761	87.505	88.384	0	0	0	NaN	67.494	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1786000	+		29140	23133	23895	23922							-0.017231859731282384
LEQYLLVWSA	10	Unmodified	_LEQYLLVWSA_					0	0	0		sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2;sp|F5HBR4|PORTL_HCMVMPortalproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL104PE=3SV=1	sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2	sp|P16735|PORTL_HCMVAPortalproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL104PE=1SV=2	MULTI-SECPEP	OvCa9_classI_Rep3	3	611.356201171875	2	611.329339	1220.64412	-2.4761	-0.0015137	-3.7624	-0.0023	-6.2385	-0.0038137	611.3266723982854	147.92	3.4057	146.97	145.8	149.21	-0.9512					133	67	3	0	0	0	0.026802	1	12714	12714		19.997	9.7315	1	28842			29141	32854	23896	23923	32382	32382					0.04262854337343924
LERAALLVQ	9	Unmodified	_LERAALLVQ_					0	0	0			REV__ZBTB48|p.L271Cfs*12|1|0.12|ENSG00000204859|chr1:6582177-6582178|-/TGCTCTTCAA|frameshift_variant	REV__ZBTB48|p.L271Cfs*12|1|0.12|ENSG00000204859|chr1:6582177-6582178|-/TGCTCTTCAA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	506.8125915527344	2	506.811116	1011.60768	2.4099	0.0012214	-0.25434	-0.0001289	2.1555	0.0010924	506.81097227525953	96.564	0.79643	96.564	96.296	97.093	0					32	18	2	0	0	0	0.2422	1	10584	10584		69.628	10.846	1	876900	+		29142	23191	23897	23924	32383	32383					0.1023402223128187
LERAALLVQ	9	Unmodified	_LERAALLVQ_					0	0	0			REV__ZBTB48|p.L271Cfs*12|1|0.12|ENSG00000204859|chr1:6582177-6582178|-/TGCTCTTCAA|frameshift_variant	REV__ZBTB48|p.L271Cfs*12|1|0.12|ENSG00000204859|chr1:6582177-6582178|-/TGCTCTTCAA|frameshift_variant	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	506.811116	1011.60768	2.4099	0.0012214	-0.25434	-0.0001289	2.1555	0.0010924	506.81097227525953	96.564	0.79643	96.564	96.296	97.093	0	-0.00070308	-0.0023512	NaN	69.628	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	876900	+		29143	23191	23897	23924							0.1023402223128187
LERAALLVQ	9	Unmodified	_LERAALLVQ_					0	0	0			REV__ZBTB48|p.L271Cfs*12|1|0.12|ENSG00000204859|chr1:6582177-6582178|-/TGCTCTTCAA|frameshift_variant	REV__ZBTB48|p.L271Cfs*12|1|0.12|ENSG00000204859|chr1:6582177-6582178|-/TGCTCTTCAA|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	506.811116	1011.60768	-0.32853	-0.0001665	3.3167	0.0016809	2.9881	0.0015144	506.8126376345888	97.526	1.0791	96.568	96.217	97.296	-0.95857	0.0030993	0.0012685	NaN	69.628	28	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69161	+		29144	23191	23897	23924							0.1023402223128187
LERAALLVQ	9	Unmodified	_LERAALLVQ_					0	0	0			REV__ZBTB48|p.L271Cfs*12|1|0.12|ENSG00000204859|chr1:6582177-6582178|-/TGCTCTTCAA|frameshift_variant	REV__ZBTB48|p.L271Cfs*12|1|0.12|ENSG00000204859|chr1:6582177-6582178|-/TGCTCTTCAA|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	506.811116	1011.60768	-0.80241	-0.00040667	6.2387	0.0031619	5.4363	0.0027552	506.813068233838	98.324	1.3885	96.565	96.314	97.702	-1.7595	0.00036877	0.0042304	NaN	69.628	41	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121620	+		29145	23191	23897	23924							0.1023402223128187
LERAALLVQ	9	Unmodified	_LERAALLVQ_					0	0	0			REV__ZBTB48|p.L271Cfs*12|1|0.12|ENSG00000204859|chr1:6582177-6582178|-/TGCTCTTCAA|frameshift_variant	REV__ZBTB48|p.L271Cfs*12|1|0.12|ENSG00000204859|chr1:6582177-6582178|-/TGCTCTTCAA|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	506.811116	1011.60768	-0.58467	-0.00029632	4.1109	0.0020834	3.5262	0.0017871	506.81315095572234	98.887	0.82866	96.562	96.279	97.108	-2.3253	-0.002765	0.0020735	NaN	69.628	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108560	+		29146	23191	23897	23924							0.1023402223128187
LERARRPGP	9	Unmodified	_LERARRPGP_					0	0	0		ENST00000216452.8_1_14:68066909-68066996:-|nuORF	ENST00000216452.8_1_14:68066909-68066996:-|nuORF	ENST00000216452.8_1_14:68066909-68066996:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.8348388671875	2	526.309606	1050.60466	-0.36194	-0.00019049	2.7254	0.0014344	2.3635	0.0012439	526.3108066387958	69.777	2.2902	67.206	66.715	69.005	-2.5707					64	44	2	0	0	0	0.027164	1	5563	5563		79.451	26.1	1	454640			29147	9675	23898	23925	32384	32384					0.08138191897114666
LERCIHPADI	10	Unmodified	_LERCIHPADI_					0	0	0		ENSG00000185875|ENST00000376356|THNSL1	ENSG00000185875|ENST00000376356|THNSL1	ENSG00000185875|ENST00000376356|THNSL1	MULTI-MSMS	OvCa9_classI_Rep2	2	583.801513671875	2	583.802965	1165.59138	-1.251	-0.00073034	0.27486	0.00016046	-0.97615	-0.00056988	583.8030699874896	54.091	2.1426	51.277	50.677	52.82	-2.8139					121	42	5	0	0	0	0.58067	1	3666	3666		44.377	1.5129	1	1035800			29148	8294	23899	23926	32385	32385					0.015205730028810649
LERDVAPGG	9	Unmodified	_LERDVAPGG_					0	0	0		nc|ENSG00000115607|O95256-2|IL18RAP;ENSG00000115607|ENST00000687160|IL18RAP	nc|ENSG00000115607|O95256-2|IL18RAP	nc|ENSG00000115607|O95256-2|IL18RAP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.78582763671875	2	457.240524	912.466495	0.19402	8.8716E-05	0.93322	0.00042671	1.1272	0.00051542	457.2401203511779	47.56	1.1105	44.452	44.133	45.244	-3.1077					45	21	3	0	0	0	0.027462	1	2590	2590		16.473	0	1	65019			29149	3113	23900	23927	32386	32386					0.006760238580113764
LEREDKVPGPL	11	Unmodified	_LEREDKVPGPL_					0	0	0		ENSG00000132688|ENST00000368223|NES	ENSG00000132688|ENST00000368223|NES	ENSG00000132688|ENST00000368223|NES	MULTI-MSMS	OvCa9_classI_Rep4_	4	626.8491821289062	2	626.848427	1251.6823	0.21989	0.00013784	0.056836	3.5628E-05	0.27673	0.00017347	626.848250380794	64.282	1.3113	60.807	60.49	61.802	-3.475					81	26	5	0	0	0	0.4646	1	4563	4563		56.434	13.57	1	1309000			29150	4164	23901	23928	32387	32387					0.06652740252002332
LERERYKEYQR	11	Unmodified	_LERERYKEYQR_					0	0	0			REV__ENST00000460723.5_1_22:32017538-32058194:-|nuORF	REV__ENST00000460723.5_1_22:32017538-32058194:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7691650390625	3	523.942589	1568.80594	-0.73152	-0.00038327	0.38328	0.00020082	-0.34824	-0.00018246	524.2770829271057	51.635	0.24274	51.635	51.504	51.747	0					8	5	2	0	0	0	0.026461	1	4001	4001		5.4129	0	1	138870	+		29151	23450	23902	23929	32388	32388					0.04428791352324879
LERFLVSN	8	Unmodified	_LERFLVSN_					0	0	0			REV__tr|A0A7D6VT08|A0A7D6VT08_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14995PE=3SV=1	REV__tr|A0A7D6VT08|A0A7D6VT08_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14995PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.2868347167969	2	489.274367	976.53418	1.8285	0.00089463	1.0336	0.00050573	2.8621	0.0014004	489.2748526053311	85.299	0.61721	85.299	85.046	85.663	0					19	14	2	0	0	0	0.028476	1	8992	8992		45.972	0	1	170660	+		29152	31563	23903	23930	32389	32389					0.044974737888196614
LERGLHPAK	9	Unmodified	_LERGLHPAK_					0	0	0			REV__ENSG00000118454|ENST00000370944|ANKRD13C	REV__ENSG00000118454|ENST00000370944|ANKRD13C	MULTI-MSMS	OvCa9_classI_Rep3	3	510.8009338378906	2	510.801083	1019.58761	0.80057	0.00040893	-0.96174	-0.00049126	-0.16116	-8.2323E-05	510.8004762883351	67.815	1.2016	64.928	64.639	65.841	-2.8873					58	23	4	0	0	0	0.62352	1	2900	2900		29.15	6.1071	1	205880	+		29153	18397	23904	23931	32390	32390					0.07860271291326626
LERGSAKVV	9	Unmodified	_LERGSAKVV_					0	0	0			REV__ENST00000296479.9_1_3:51747995-51752125:+|nuORF	REV__ENST00000296479.9_1_3:51747995-51752125:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.7867736816406	2	479.787641	957.56073	1.0491	0.00050334	-1.3086	-0.00062786	-0.25953	-0.00012452	479.7869235806788	36.612	1.0457	33.72	33.546	34.591	-2.8925					33	20	2	0	0	0	0.48047	1	1295	1295		44.377	0	1	242730	+		29154	20939	23905	23932	32391	32391					0.08025162680144149
LERHQLII	8	Unmodified	_LERHQLII_					0	0	0		ENSG00000264717|ENST00000576178|NPY4R2;ENSG00000204174|ENST00000374312|NPY4R	ENSG00000264717|ENST00000576178|NPY4R2	ENSG00000264717|ENST00000576178|NPY4R2	MULTI-MSMS	OvCa9_classI_Rep2	2	511.31036376953125	2	511.311284	1020.60801	-0.51063	-0.00026109	-0.14803	-7.5691E-05	-0.65866	-0.00033678	511.3111522526894	74.16	1.4606	72.189	71.798	73.259	-1.9711					87	27	4	0	0	0	0.6962	1	6073	6073		44.117	0	1	463700			29155	8954	23906	23933	32392	32392					0.09853441951145214
LERHQLII	8	Unmodified	_LERHQLII_					0	0	0		ENSG00000264717|ENST00000576178|NPY4R2;ENSG00000204174|ENST00000374312|NPY4R	ENSG00000264717|ENST00000576178|NPY4R2	ENSG00000264717|ENST00000576178|NPY4R2	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.3116455078125	2	511.311284	1020.60801	-0.011328	-5.7922E-06	-1.1376	-0.00058169	-1.149	-0.00058748	511.310655644835	75.467	1.2533	72.528	72.159	73.412	-2.9389					76	25	4	0	0	0	0.57878	1	5945	5945		68.485	0	1	541510			29156	8954	23906	23933	32393	32393					0.09853441951145214
LERIRTELKQI	11	Unmodified	_LERIRTELKQI_					0	0	0			REV__ENSG00000109063|ENST00000583535|MYH3	REV__ENSG00000109063|ENST00000583535|MYH3	MULTI-MSMS	OvCa9_classI_Rep3	3	466.95196533203125	3	466.952426	1397.83545	1.5916	0.00074322	-2.0144	-0.00094062	-0.42273	-0.00019739	466.9514863874782	62.714	2.1935	59.681	59.362	61.555	-3.0339					129	43	5	0	0	0	0.68391	1	2312	2312		35.178	0	1	504980	+		29157	17914	23907	23934	32394	32394					0.15244355368463403
LERISRLEEK	10	Unmodified	_LERISRLEEK_					0	0	0		ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	MULTI-MSMS	OvCa9_classI_Rep2	2	636.8663940429688	2	636.867151	1271.71975	-2.2387	-0.0014258	2.2569	0.0014373	0.018156	1.1563E-05	636.868509361535	63.408	1.4712	60.663	60.213	61.685	-2.7444					78	27	5	0	0	0	0.62712	1	4801	4801		19.997	0	1	433500			29158	3991	23908	23935	32395	32395					0.09475831517602273
LERKVESL	8	Unmodified	_LERKVESL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa9_classI_Rep2	2	487.2874755859375	2	487.287474	972.560395	-0.58577	-0.00028544	-0.5191	-0.00025295	-1.1049	-0.00053839	487.2873954078766	48.511	1.8372	45.75	45.428	47.266	-2.7603					98	36	4	0	0	0	0.28381	6	3017	3017;3021;3027;3033;3039;3052		110.12	10.379	1	1108600			29159	1049	23909	23936	32396;32397;32398;32399;32400;32401	32396					0.07301742960294177
LERKVESL	8	Unmodified	_LERKVESL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.2885437011719	2	487.287474	972.560395	-1.4376	-0.00070053	-1.277	-0.00062226	-2.7146	-0.0013228	487.28767451064107	48.896	1.7164	45.789	45.502	47.218	-3.1077					112	32	6	0	0	0	0.16223	7	2737	2714;2725;2737;2749;2762;2774;2787		131.03	6.5217	1	3473000			29160	1049	23909	23936	32402;32403;32404;32405;32406;32407;32408	32404					0.07301742960294177
LERLALGAL	9	Unmodified	_LERLALGAL_					0	0	0			REV__ENSG00000142279|ENST00000590071|WTIP	REV__ENSG00000142279|ENST00000590071|WTIP	MULTI-MSMS	OvCa9_classI_Rep2	2	478.3003845214844	2	478.300384	954.586216	0.13338	6.3796E-05	-1.0993	-0.00052578	-0.96589	-0.00046199	478.2997121772516	86.734	1.3256	85.303	84.962	86.288	-1.4311					71	25	4	0	0	0	0.21231	1	7561	7561		74.255	2.9593	1	552120	+		29161	19779	23910	23937	32409	32409					0.10710637202555517
LERLGRVAL	9	Unmodified	_LERLGRVAL_					0	0	0			REV__chr16:4609908-4614678|197|10.56|0.33|4.98|-|2|UBALD1,UBALD1|1	REV__chr16:4609908-4614678|197|10.56|0.33|4.98|-|2|UBALD1,UBALD1|1	MULTI-MSMS	OvCa9_classI_Rep2	2	513.8250732421875	2	513.824558	1025.63456	-0.30876	-0.00015865	-0.42303	-0.00021736	-0.73179	-0.00037601	513.8242497771212	77.235	1.8594	75.445	74.946	76.805	-1.7894					108	35	5	0	0	0	0.51865	1	6415	6415		40.778	0	1	840920	+		29162	15936	23911	23938	32410	32410					0.12277130842471706
LERLGSLTL	9	Unmodified	_LERLGSLTL_					0	0	0		NCOA4|p.R517Gfs*12|1|0.42|ENSG00000266412|chr10:46010372-46010373|-/CC|frameshift_variant;ENSG00000266412|ENST00000581486|NCOA4;nc|ENSG00000266412|Q13772-3|NCOA4;nc|ENSG00000266412|Q13772-4|NCOA4;nc|ENSG00000266412|Q13772-2|NCOA4	NCOA4|p.R517Gfs*12|1|0.42|ENSG00000266412|chr10:46010372-46010373|-/CC|frameshift_variant	NCOA4|p.R517Gfs*12|1|0.42|ENSG00000266412|chr10:46010372-46010373|-/CC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	501.30133056640625	2	501.303124	1000.5917	-1.3993	-0.00070149	1.2603	0.0006318	-0.13901	-6.9684E-05	501.30362374390734	103.02	2.0272	102.33	102.03	104.06	-0.68459					86	40	4	0	0	0	0.18887	1	9493	9493		78.264	0.9462	1	287300			29163	9528	23912	23939	32411	32411					0.09142315994370165
LERLKSMLI	9	Unmodified	_LERLKSMLI_					0	0	0			REV__DAPK1|p.T1375I|1|0.14|ENSG00000196730|chr9:87707195-87707195|C/T|missense_variant	REV__DAPK1|p.T1375I|1|0.14|ENSG00000196730|chr9:87707195-87707195|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.836669921875	2	551.836277	1101.658	-0.84288	-0.00046513	-2.3055	-0.0012723	-3.1484	-0.0017374	551.8349014956834	108.98	1.763	107.26	106.87	108.63	-1.7256					79	33	4	0	0	0	0.16562	1	9983	9983		82.241	5.4664	1	318200	+		29164	16266	23913	23940	32412	32412					0.1112380856479831
LERMKDMYR	9	Unmodified	_LERMKDMYR_					0	0	0		ENSG00000204450|ENST00000533122|TRIM64;ENSG00000189253|ENST00000329862|TRIM64B	ENSG00000204450|ENST00000533122|TRIM64	ENSG00000204450|ENST00000533122|TRIM64	MULTI-SECPEP	OvCa99_classI_Rep5	1	413.9201354980469	3	414.542492	1240.60565	-0.38723	-0.00016052	2.291	0.00094973	1.9038	0.0007892	414.5434144904502	70.163	0.4053	70.163	69.922	70.328	0					15	9	3	0	0	0	0.027462	1	6704	6704		20.837	0	1	194570			29165	8546	23914	23941	32413	32413					-0.005030978404874986
LERMQGENGR	10	Unmodified	_LERMQGENGR_					0	0	0			REV__ENSG00000067900|ENST00000399799|ROCK1	REV__ENSG00000067900|ENST00000399799|ROCK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	594.8477783203125	2	595.290753	1188.56695	-0.16925	-0.00010076	-4.4404	-0.0026433	-4.6096	-0.0027441	595.2881673737287	79.972	0.58886	77.221	76.986	77.575	-2.7514					20	11	2	0	0	0	0.02676	1	6538	6538		33.922	0	1	70810	+		29166	16843	23915	23942	32414	32414					-0.01978687150631231
LERNDKLWLVT	11	Unmodified	_LERNDKLWLVT_					0	0	0			REV__nc|ENSG00000091129|Q92823-2|NRCAM	REV__nc|ENSG00000091129|Q92823-2|NRCAM	MULTI-SECPEP	OvCa9_classI_Rep2	2	463.7920837402344	3	462.92951	1385.7667	-1.1743	-0.00054363	-1.9314	-0.0008941	-3.1057	-0.0014377	462.92852965981893	54.501	1.4468	51.687	51.175	52.622	-2.8139					82	28	4	0	0	0	0.026101	1	3840	3840		15.921	10.508	1	228420	+		29167	17242	23916	23943	32415	32415					0.08924691068727952
LERNLNLAFQ	10	Unmodified	_LERNLNLAFQ_					0	0	0		tr|A0A7D6VQZ7|A0A7D6VQZ7_9CLOTFerrousirontransportproteinBOS=ClostridiumintestinaleOX=36845GN=feoBPE=3SV=1	tr|A0A7D6VQZ7|A0A7D6VQZ7_9CLOTFerrousirontransportproteinBOS=ClostridiumintestinaleOX=36845GN=feoBPE=3SV=1	tr|A0A7D6VQZ7|A0A7D6VQZ7_9CLOTFerrousirontransportproteinBOS=ClostridiumintestinaleOX=36845GN=feoBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	610.3265380859375	2	609.335487	1216.65642	1.4392	0.00087694	-3.0874	-0.0018813	-1.6482	-0.0010043	609.3334229570914	146.15	0.64441	146.15	145.88	146.52	0					16	12	2	0	0	0	0.026931	1	17079	17079		37.812	3.639	1	62441			29168	34883	23917	23944	32416	32416					0.056758908003757824
LERNPQSYL	9	Unmodified	_LERNPQSYL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	OvCa99_classI_Rep5	1	560.2999267578125	2	560.293288	1118.57202	2.5638	0.0014365	1.69	0.00094692	4.2539	0.0023834	560.294624000957	118.2	0.83484	118.2	117.79	118.63	0					36	17	3	0	0	0	0.14998	1	13563	13563		84.916	5.4645	1	115040			29169	8756	23918	23945	32417	32417					0.017479399836020093
LERPIIAF	8	Unmodified	_LERPIIAF_					0	0	0		nc|ENSG00000033867|Q9Y6M7-4|SLC4A7;nc|ENSG00000033867|Q9Y6M7-2|SLC4A7;nc|ENSG00000033867|Q9Y6M7-9|SLC4A7;nc|ENSG00000033867|Q9Y6M7-6|SLC4A7;nc|ENSG00000033867|Q9Y6M7-13|SLC4A7;nc|ENSG00000033867|Q9Y6M7-12|SLC4A7;nc|ENSG00000033867|Q9Y6M7|SLC4A7;nc|ENSG00000033867|Q9Y6M7-8|SLC4A7;ENSG00000033867|ENST00000454389|SLC4A7;nc|ENSG00000033867|Q9Y6M7-3|SLC4A7;nc|ENSG00000033867|Q9Y6M7-11|SLC4A7;nc|ENSG00000033867|Q9Y6M7-14|SLC4A7;nc|ENSG00000033867|Q9Y6M7-10|SLC4A7	nc|ENSG00000033867|Q9Y6M7-4|SLC4A7	nc|ENSG00000033867|Q9Y6M7-4|SLC4A7	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.717529296875	2	479.789653	957.564752	-0.29541	-0.00014173	-4.077	-0.0019561	-4.3724	-0.0020978	479.7875800783428	38.995	0.44912	38.995	38.793	39.242	0					21	9	3	0	0	0	0.028476	1	2232	2232		9.4706	0	1	363670			29170	1077	23919	23946	32418	32418					0.0842725217385123
LERPPPQLL	9	Unmodified	_LERPPPQLL_					0	0	0		ENST00000374057.3_1_9:117267080-117267632:-|nuORF	ENST00000374057.3_1_9:117267080-117267632:-|nuORF	ENST00000374057.3_1_9:117267080-117267632:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	531.816650390625	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.51865	1	13736	13736		40.778	1.5253	1	166960			29171	11024	23920	23947	32419	32419					0.09498308748334239
LERPPPQLL	9	Unmodified	_LERPPPQLL_					0	0	0		ENST00000374057.3_1_9:117267080-117267632:-|nuORF	ENST00000374057.3_1_9:117267080-117267632:-|nuORF	ENST00000374057.3_1_9:117267080-117267632:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	531.816162109375	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.55588	1	11436	11436		37.159	2.9866	1	178650			29172	11024	23920	23947	32420	32420					0.09498308748334239
LERPRPRR	8	Unmodified	_LERPRPRR_					0	0	0			REV__ENST00000553142.5_1_12:58021477-58021885:-|nuORF	REV__ENST00000553142.5_1_12:58021477-58021885:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3309936523438	2	540.330873	1078.64719	0.34656	0.00018726	-1.6282	-0.00087979	-1.2817	-0.00069253	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.72896	1	13910	13910		37.159	0	1	342200	+		29173	27506	23921	23948	32421	32421					0.1110158702535955
LERQKPDI	8	Unmodified	_LERQKPDI_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.2527160644531	2	499.785099	997.555644	2.9362	0.0014674	3.5975	0.001798	6.5337	0.0032654	499.78665326414665	89.768	0.62519	89.768	89.476	90.101	0					30	14	3	0	0	0	0.028476	1	9641	9641		82.305	0	1	919580	+		29174	22731	23922	23949	32422	32422					0.05676858817525954
LERRFIGC	8	Unmodified	_LERRFIGC_					0	0	0			REV__ENST00000531270.5_1_15:101565016-101589971:+|nuORF	REV__ENST00000531270.5_1_15:101565016-101589971:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.2721862792969	2	497.268561	992.52257	1.852	0.00092094	-0.23713	-0.00011792	1.6149	0.00080302	497.268286448106	81.998	0.41223	81.998	81.895	82.307	0					14	9	2	0	0	0	0.028476	1	8465	8465		39.021	1.993	1	633600	+		29175	27215	23923	23950	32423	32423					0.026009534938225443
LERRKLPG	8	Unmodified	_LERRKLPG_					0	0	0		ENST00000502514.5_1_5:177377366-177384631:+|nuORF	ENST00000502514.5_1_5:177377366-177384631:+|nuORF	ENST00000502514.5_1_5:177377366-177384631:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.27294921875	2	484.803626	967.592698	-0.092857	-4.5017E-05	-1.0039	-0.0004867	-1.0968	-0.00053172	484.80311618289386	62.134	0.82072	58.677	58.29	59.111	-3.4577					27	16	2	0	0	0	0.028476	1	4288	4288		37.159	0	1	62141			29176	12850	23924	23951	32424	32424					0.10760575153949503
LERRNHLI	8	Unmodified	_LERRNHLI_					0	0	0		ENSG00000180543|ENST00000322128|TSPYL5	ENSG00000180543|ENST00000322128|TSPYL5	ENSG00000180543|ENST00000322128|TSPYL5	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.2774658203125	2	525.811982	1049.60941	0.75107	0.00039492	4.0972	0.0021544	4.8483	0.0025493	525.8139013318071	156.57	0.55304	156.57	156.29	156.85	0					23	10	3	0	0	0	0.028476	1	18375	18375		34.173	0	1	78371			29177	7878	23925	23952	32425	32425					0.08659076039884894
LERRRKRRRRR	11	Unmodified	_LERRRKRRRRR_					0	0	0		ENST00000549136.1_1_12:95869939-95877074:+|nuORF	ENST00000549136.1_1_12:95869939-95877074:+|nuORF	ENST00000549136.1_1_12:95869939-95877074:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	410.53271484375	4	410.267545	1637.04107	0.36141	0.00014827	0.47575	0.00019519	0.83716	0.00034346	410.2686464201662	35.053	0.18922	35.053	34.911	35.1	0					5	3	2	0	0	0	0.026551	1	1733	1733		1.4188	1.0473	1	8298.7			29178	13567	23926	23953	32426	32426					0.2480341118175602
LERRTRAR	8	Unmodified	_LERRTRAR_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP;MPRIP|p.K652Sfs*24|1|0.17|ENSG00000133030|chr17:17158910-17158910|A/-|frameshift_variant	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.7977294921875	2	529.320506	1056.62646	-1.406	-0.00074424	2.8911	0.0015303	1.4851	0.00078608	529.3221108517963	99.39	0.57091	97.064	96.795	97.366	-2.3253					12	10	2	0	0	0	0.028476	1	8858	8858		19.997	0	1	16075			29179	4191	23927	23954	32427	32427					0.10040996645693667
LERRYKRLLEQ	11	Unmodified	_LERRYKRLLEQ_					0	0	0			REV__nc|ENSG00000140859|Q9BVG8-4|KIFC3	REV__nc|ENSG00000140859|Q9BVG8-4|KIFC3	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.7806091308594	3	501.963325	1502.86814	0.15862	7.962E-05	2.9279	0.0014697	3.0865	0.0015493	502.2989997238409	45.267	0.44096	45.267	44.932	45.373	0					12	9	2	0	0	0	0.026204	1	3098	3098		11.932	2.7206	1	207630	+		29180	19704	23928	23955	32428	32428					0.13682562491317185
LERSLPALPA	10	Unmodified	_LERSLPALPA_					0	0	0		ENST00000599256.5_1_19:18682694-18682976:+|nuORF	ENST00000599256.5_1_19:18682694-18682976:+|nuORF	ENST00000599256.5_1_19:18682694-18682976:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.2796630859375	2	533.816399	1065.61824	-1.3862	-0.00073999	1.6708	0.00089191	0.28457	0.00015191	533.8170306272547	127.96	0.47301	126.52	126.34	126.81	-1.4357					17	8	3	0	0	0	0.026956	1	12230	12230		42.396	3.59	1	28732			29181	14206	23929	23956	32429	32429					0.08806004885695984
LERSLPALPA	10	Unmodified	_LERSLPALPA_					0	0	0		ENST00000599256.5_1_19:18682694-18682976:+|nuORF	ENST00000599256.5_1_19:18682694-18682976:+|nuORF	ENST00000599256.5_1_19:18682694-18682976:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	533.816399	1065.61824	-0.11765	-6.2802E-05	0.14265	7.6149E-05	0.025003	1.3347E-05	533.8163135890375	126.86	0.4945	126.62	126.39	126.89	-0.2359	0.048088	-1.6202E-05	NaN	58.782	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24671			29182	14206	23929	23956							0.08806004885695984
LERSLPALPA	10	Unmodified	_LERSLPALPA_					0	0	0		ENST00000599256.5_1_19:18682694-18682976:+|nuORF	ENST00000599256.5_1_19:18682694-18682976:+|nuORF	ENST00000599256.5_1_19:18682694-18682976:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	533.816399	1065.61824	1.6771	0.00089526	-1.4179	-0.00075691	0.25917	0.00013835	533.8155631852849	127.67	0.52036	126.57	126.3	126.83	-1.0933	8.5191E-05	-0.0016823	NaN	58.782	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11555			29183	14206	23929	23956							0.08806004885695984
LERSNGSLALL	11	Unmodified	_LERSNGSLALL_					0	0	0			REV__ENST00000476007.2_3_3:58293695-58303220:+|nuORF	REV__ENST00000476007.2_3_3:58293695-58303220:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.835205078125	2	586.83532	1171.65609	-1.2922	-0.0007583	0.87369	0.00051271	-0.41849	-0.00024558	586.835730888459	92.749	1.355	90.242	89.857	91.212	-2.5072					84	27	4	0	0	0	0.50761	1	8086	8086		53.089	1.8963	1	840080	+		29184	20870	23930	23957	32430	32430					0.07712471080526484
LERTLQGF	8	Unmodified	_LERTLQGF_					0	0	0		nc|ENSG00000120616|Q9H2F5|EPC1	nc|ENSG00000120616|Q9H2F5|EPC1	nc|ENSG00000120616|Q9H2F5|EPC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.7398681640625	2	482.266542	962.51853	-0.49489	-0.00023867	-0.70231	-0.0003387	-1.1972	-0.00057737	482.2658445043003	105.9	1.1631	103.88	103.45	104.61	-2.0161					30	22	2	0	0	0	0.028476	1	9575	9575		53.351	19.179	1	15241			29185	14988	23931	23958	32431	32431					0.035771872717759834
LERTVHFYQKQ	11	Unmodified	_LERTVHFYQKQ_					0	0	0		CTAGE9|p.M608Ifs*4|1|0.64|ENSG00000236761|chr6:131709175-131709194|ATTGCCCTGGTGGAGGAAAC/-|frameshift_variant;nc|ENSG00000289604|P0CG41|CTAGE8;nc|ENSG00000288784|Q8IX94|CTAGE4;ENSG00000271321|ENST00000470691|CTAGE6;ENSG00000271079|ENST00000420911|CTAGE15;ENSG00000236761|ENST00000314099|CTAGE9	CTAGE9|p.M608Ifs*4|1|0.64|ENSG00000236761|chr6:131709175-131709194|ATTGCCCTGGTGGAGGAAAC/-|frameshift_variant	CTAGE9|p.M608Ifs*4|1|0.64|ENSG00000236761|chr6:131709175-131709194|ATTGCCCTGGTGGAGGAAAC/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	482.7831726074219	3	483.593009	1447.7572	-0.85845	-0.00041514	2.9739	0.0014382	2.1154	0.001023	483.5944257623901	81.353	0.49104	78.642	78.396	78.887	-2.7106					13	9	2	0	0	0	0.025819	1	6665	6665		25.892	0	1	27232			29186	691	23932	23959	32432	32432					0.05122922783243666
LERVHYLQV	9	Unmodified	_LERVHYLQV_					0	0	0		nc|ENSG00000250510|Q16538-2|GPR162;ENSG00000250510|ENST00000311268|GPR162	nc|ENSG00000250510|Q16538-2|GPR162	nc|ENSG00000250510|Q16538-2|GPR162	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.2764892578125	2	578.827298	1155.64004	0.97405	0.00056381	-0.20261	-0.00011727	0.77145	0.00044653	578.8270304535572	111.6	0.54678	111.6	111.38	111.93	0					18	11	2	0	0	0	0.027462	1	12716	12716		37.159	0	1	205620			29187	9420	23933	23960	32433	32433					0.06844809634276317
LERVQHRVPE	10	Unmodified	_LERVQHRVPE_					0	0	0		nc|ENSG00000099814|Q9Y4F5-3|CEP170B;ENSG00000099814|ENST00000414716|CEP170B;nc|ENSG00000099814|Q9Y4F5|CEP170B	nc|ENSG00000099814|Q9Y4F5-3|CEP170B	nc|ENSG00000099814|Q9Y4F5-3|CEP170B	MULTI-MSMS	OvCa99_classI_Rep5	1	631.8546142578125	2	631.851835	1261.68912	2.4253	0.0015324	0.4943	0.00031232	2.9196	0.0018447	631.8519004964775	99.928	0.75117	99.928	99.736	100.49	0					39	17	3	0	0	0	0.44431	1	11100	11100		62.107	1.9892	1	2142100			29188	1980	23934	23961	32434	32434					0.06874097923241607
LERVSWSGE	9	Unmodified	_LERVSWSGE_					0	0	0		ENSG00000151445|ENST00000557658|VIPAS39;nc|ENSG00000151445|Q9H9C1-2|VIPAS39;ENST00000553691.5_1_14:77907431-77919723:-|nuORF	ENSG00000151445|ENST00000557658|VIPAS39	ENSG00000151445|ENST00000557658|VIPAS39	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.7913818359375	2	531.764363	1061.51417	-1.1399	-0.00060617	4.2909	0.0022817	3.151	0.0016756	531.7662363856431	62.395	1.6024	58.937	58.475	60.078	-3.4577					45	32	2	0	0	0	0.027426	1	4467	4467		18.262	0	1	278010			29189	5551	23935	23962	32435	32435					-0.014123219418024746
LERWKIKRI	9	Unmodified	_LERWKIKRI_					0	0	0		ENSG00000198842|ENST00000361200|STYXL2	ENSG00000198842|ENST00000361200|STYXL2	ENSG00000198842|ENST00000361200|STYXL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	620.8338012695312	2	621.395682	1240.77681	-1.1151	-0.0006929	-0.63547	-0.00039488	-1.7505	-0.0010878	621.395044228488	100.62	0.51915	98.349	98.083	98.602	-2.2665					11	9	2	0	0	0	0.027462	1	9009	9009		19.104	0	1	10112			29190	8887	23936	23963	32436	32436					0.1660534358466066
LERWRKRR	8	Unmodified	_LERWRKRR_					0	0	0		ENST00000400419.1_1_13:44717950-44734837:-|nuORF	ENST00000400419.1_1_13:44717950-44734837:-|nuORF	ENST00000400419.1_1_13:44717950-44734837:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.19049072265625	3	400.579257	1198.71594	1.2016	0.00048133	-2.3061	-0.00092378	-1.1045	-0.00044244	400.57825608057067	33.394	0.49596	33.394	33.136	33.632	0					14	9	2	0	0	0	0.028476	1	1518	1518		27.882	5.3026	1	37757			29191	11408	23937	23964	32437	32437					0.1245325132506423
LERWRTPAP	9	Unmodified	_LERWRTPAP_					0	0	0		ENST00000449944.5_1_22:38005063-38010197:+|nuORF	ENST00000449944.5_1_22:38005063-38010197:+|nuORF	ENST00000449944.5_1_22:38005063-38010197:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	564.2992553710938	2	563.311815	1124.60908	1.1089	0.00062463	-2.3594	-0.0013291	-1.2505	-0.00070444	563.3103344937161	122.81	1.3514	121.79	121.48	122.83	-1.0286					53	25	3	0	0	0	0.027462	1	9512	9512		16.473	0	1	182960			29192	12033	23938	23965	32438	32438					0.0517565632003425
LERYGLGGF	9	Unmodified	_LERYGLGGF_					0	0	0		tr|A0A553SHZ4|A0A553SHZ4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13855PE=4SV=1	tr|A0A553SHZ4|A0A553SHZ4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13855PE=4SV=1	tr|A0A553SHZ4|A0A553SHZ4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13855PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.32452392578125	2	506.266542	1010.51853	-0.45009	-0.00022786	0.33577	0.00016999	-0.11431	-5.7873E-05	506.266325612266	65.709	2.0044	65.709	64.091	66.096	0					77	49	2	0	0	0	0.027462	1	5906	5906		30.504	0	1	506420			29193	33329	23939	23966	32439	32439					0.013691872717686238
LESAKKEII	9	Unmodified	_LESAKKEII_					0	0	0			REV__tr|A0A7D6VU01|A0A7D6VU01_9CLOTSpoVRfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05030PE=4SV=1	REV__tr|A0A7D6VU01|A0A7D6VU01_9CLOTSpoVRfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05030PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	515.8109741210938	2	515.810782	1029.60701	-0.67933	-0.0003504	0.2906	0.00014989	-0.38873	-0.00020051	515.8107542347046	56.253	1.6846	53.45	53.027	54.712	-2.804					94	33	4	0	0	0	0.2422	1	3975	3975		69.628	3.1983	1	455670	+		29194	31642	23940	23967	32440	32440					0.09339182791586609
LESAVVKVI	9	Unmodified	_LESAVVKVI_					0	0	0		PRUNE2|p.I2107Nfs*6|1|0.11|ENSG00000106772|chr9:76705954-76705955|-/T|frameshift_variant;PRUNE2|p.D2106Efs*46|1|0.11|ENSG00000106772|chr9:76705956-76705957|-/CATCATATTCAAAATCACCCCACGAGGCT|frameshift_variant;PRUNE2|p.V2237Cfs*11|1|0.06|ENSG00000106772|chr9:76705569-76705570|-/T|frameshift_variant;PRUNE2|p.E2525Gfs*3|1|0.07|ENSG00000106772|chr9:76704039-76704039|T/-|frameshift_variant;nc|ENSG00000106772|Q8WUY3-4|PRUNE2;ENSG00000106772|ENST00000376718|PRUNE2;nc|ENSG00000106772|Q8WUY3-2|PRUNE2;nc|ENSG00000106772|Q8WUY3-3|PRUNE2;ENST00000492157.5_1_9:79438526-79520879:-|nuORF	PRUNE2|p.I2107Nfs*6|1|0.11|ENSG00000106772|chr9:76705954-76705955|-/T|frameshift_variant	PRUNE2|p.I2107Nfs*6|1|0.11|ENSG00000106772|chr9:76705954-76705955|-/T|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	479.3040466308594	2	479.302593	956.590633	1.8974	0.00090945	0.095107	4.5585E-05	1.9926	0.00095504	479.3024837371593	110.18	0.94227	110.18	109.9	110.85	0					47	20	4	0	0	0	0.29717	1	12494	12494		63.306	5.495	1	839730			29195	2573	23941	23968	32441	32441					0.11060101625469088
LESEDEVKL	9	Unmodified	_LESEDEVKL_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000514332.5_1_5:179048171-179050134:-|nuORF;ENST00000513972.5_1_5:179047887-179050134:-|nuORF;ENST00000524180.5_1_5:179047015-179050134:-|nuORF;HNRNPH1-TRAFD1|1|fusion	ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	MULTI-MSMS	OvCa99_classI_Rep5	1	531.273193359375	2	531.271687	1060.52882	0.31848	0.0001692	-0.13371	-7.1034E-05	0.18477	9.8164E-05	531.2715090006456	73.847	0.76413	73.847	73.56	74.324	0					50	19	4	0	0	0	0.0089996	2	7260	7260;7292		219.56	52.886	1	10432000			29196	6970	23942	23969	32442;32443	32442					0.0009770541569196212
LESEEEVKL	9	Unmodified	_LESEEEVKL_					0	0	0		ENSG00000126945|ENST00000316594|HNRNPH2	ENSG00000126945|ENST00000316594|HNRNPH2	ENSG00000126945|ENST00000316594|HNRNPH2	MULTI-MSMS	OvCa99_classI_Rep5	1	538.27978515625	2	538.279512	1074.54447	-0.1698	-9.1398E-05	0.66685	0.00035895	0.49705	0.00026755	538.2797659260756	73.394	0.59686	73.394	73.195	73.792	0					34	14	3	0	0	0	0.055627	1	7190	7190		115.49	24.717	1	2156200			29197	3812	23943	23970	32444	32444					0.010179919327129028
LESFGKELDE	10	Unmodified	_LESFGKELDE_					0	0	0			REV__tr|A0A7D6VY19|A0A7D6VY19_9CLOTtryptophansynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14130PE=3SV=1	REV__tr|A0A7D6VY19|A0A7D6VY19_9CLOTtryptophansynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14130PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	583.8038330078125	2	583.782418	1165.55028	-1.6928	-0.00098823	-2.2191	-0.0012955	-3.9119	-0.0022837	583.7803262245839	54.284	0.61475	51.036	50.927	51.542	-3.2474					16	11	2	0	0	0	0.026606	1	3350	3350		62.107	3.3255	1	37677	+		29198	31803	23944	23971	32445	32445					-0.025869095556117827
LESGHKLFV	9	Unmodified	_LESGHKLFV_					0	0	0			REV__ENSG00000120686|ENST00000239878|UFM1	REV__ENSG00000120686|ENST00000239878|UFM1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7705078125	2	515.290017	1028.56548	0.15063	7.7621E-05	-4.2056	-0.0021671	-4.055	-0.0020895	515.2876116744982	38.404	0.89103	35.477	35.106	35.997	-2.9264					22	17	2	0	0	0	0.027462	1	1521	1521		29.15	0	1	28380	+		29199	18508	23945	23972	32446	32446					0.05234046822897653
LESGLREQIM	10	Unmodified	_LESGLREQIM_					0	0	0			REV__TMEM2|p.T1263Rfs*15|1|0.07|ENSG00000135048|chr9:71690156-71690156|T/-|frameshift_variant	REV__TMEM2|p.T1263Rfs*15|1|0.07|ENSG00000135048|chr9:71690156-71690156|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	588.3067626953125	2	588.308081	1174.60161	-1.0695	-0.0006292	1.0508	0.0006182	-0.018703	-1.1003E-05	588.3085738686653	63.984	2.3836	61.259	60.708	63.092	-2.7248					124	45	5	0	0	0	0.32926	1	4840	4840		77.318	0.54344	1	1044000	+		29200	19251	23946	23973	32447	32447					0.021291359374572494
LESHGVRVL	9	Unmodified	_LESHGVRVL_					0	0	0			REV__nc|ENSG00000114573|P38606-2|ATP6V1A	REV__nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.3295593261719	2	505.293091	1008.57163	-0.058241	-2.9429E-05	4.0164	0.0020295	3.9582	0.002	505.29495524052874	72.018	0.52102	69.511	69.226	69.747	-2.5071					15	9	2	0	0	0	0.027462	1	5785	5785		34.173	0	1	26591	+		29201	18193	23947	23974	32448	32448					0.06768565054437659
LESHVGIGKE	10	Unmodified	_LESHVGIGKE_					0	0	0		ENST00000460773.5_1_X:138814597-138879340:-|nuORF	ENST00000460773.5_1_X:138814597-138879340:-|nuORF	ENST00000460773.5_1_X:138814597-138879340:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	534.7913818359375	2	534.787838	1067.56112	3.0352	0.0016232	3.7794	0.0020212	6.8146	0.0036444	534.7896759823677	56.343	2.6096	53.193	52.451	55.06	-3.1504					179	83	3	0	0	0	0.71173	1	1595	1595		29.17	0.020503	1	87189			29202	12156	23948	23975	32449	32449					0.030045376093539744
LESIGQNTKD	10	Unmodified	_LESIGQNTKD_					0	0	0			REV__PHKA1|p.R1066Ifs*45|1|0.07|ENSG00000067177|chrX:72593150-72593151|-/ATTCGACCCAGCAATCCCATTACTAGGTA|frameshift_variant	REV__PHKA1|p.R1066Ifs*45|1|0.07|ENSG00000067177|chrX:72593150-72593151|-/ATTCGACCCAGCAATCCCATTACTAGGTA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.8350830078125	2	552.78021	1103.54587	-0.40705	-0.00022501	-0.69015	-0.0003815	-1.0972	-0.00060651	552.7797418732483	101.54	1.1728	99.276	99.066	100.24	-2.2665					49	22	3	0	0	0	0.026573	1	9171	9171		70.816	8.7088	1	156330	+		29203	16830	23949	23976	32450	32450					-0.0017637397850194247
LESIIAVIPI	10	Unmodified	_LESIIAVIPI_					0	0	0		tr|A0A553SIP9|A0A553SIP9_NIACIChemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_15230PE=3SV=1	tr|A0A553SIP9|A0A553SIP9_NIACIChemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_15230PE=3SV=1	tr|A0A553SIP9|A0A553SIP9_NIACIChemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_15230PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.33544921875	2	534.339175	1066.6638	-0.8908	-0.00047599	-1.8712	-0.00099985	-2.762	-0.0014758	534.3380131177887	78.26	1.189	75.443	75.116	76.305	-2.8165					47	24	3	0	0	0	0.027117	1	6395	6395		23.042	7.4007	1	136740			29204	33407	23950	23977	32451	32451					0.1331323034808065
LESIIAVIPI	10	Unmodified	_LESIIAVIPI_					0	0	0		tr|A0A553SIP9|A0A553SIP9_NIACIChemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_15230PE=3SV=1	tr|A0A553SIP9|A0A553SIP9_NIACIChemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_15230PE=3SV=1	tr|A0A553SIP9|A0A553SIP9_NIACIChemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_15230PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	534.339175	1066.6638	-0.13431	-7.1768E-05	-2.221	-0.0011868	-2.3554	-0.0012586	534.3376727650844	77.32	1.5697	74.966	74.681	76.25	-2.3534	-0.2208	-0.00036829	NaN	16.473	58	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133330			29205	33407	23950	23977							0.1331323034808065
LESIPFKECKA	11	Unmodified	_LESIPFKECKA_					0	0	0			REV__tr|A0A553SNC6|A0A553SNC6_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_24205PE=3SV=1	REV__tr|A0A553SNC6|A0A553SNC6_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_24205PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	422.2221984863281	3	422.225046	1263.65331	-0.87834	-0.00037086	-4.2657	-0.0018011	-5.1441	-0.0021719	422.2231892240926	60.911	2.1685	58.14	57.501	59.669	-2.7702					122	41	4	0	0	0	0.69308	1	4500	4500		32.034	2.4834	1	698070	+		29206	30408	23951	23978	32452	32452					0.03202879631362521
LESISTKVI	9	Unmodified	_LESISTKVI_					0	0	0		ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L;DDX60L|p.R1229Pfs*17|1|0.04|ENSG00000181381|chr4:168394589-168394590|-/GAAGAGTAAAGGGTTATGACCAG|frameshift_variant	ENSG00000181381|ENST00000682922|DDX60L;DDX60L|p.R1229Pfs*17|1|0.04|ENSG00000181381|chr4:168394589-168394590|-/GAAGAGTAAAGGGTTATGACCAG|frameshift_variant	DDX60L|p.R1229Pfs*17|1|0.04|ENSG00000181381|chr4:168394589-168394590|-/GAAGAGTAAAGGGTTATGACCAG|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	495.2991638183594	2	495.297507	988.580462	1.9395	0.00096062	0.036547	1.8102E-05	1.976	0.00097872	495.29751070870896	76.5	0.76366	76.5	76.28	77.044	0					37	18	3	0	0	0	0.33652	1	7687	7687		58.782	2.0609	1	1962500			29207	7929;725	23952	23979	32453	32453					0.08571493900251426
LESISTKVI	9	Unmodified	_LESISTKVI_					0	0	0		ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L;DDX60L|p.R1229Pfs*17|1|0.04|ENSG00000181381|chr4:168394589-168394590|-/GAAGAGTAAAGGGTTATGACCAG|frameshift_variant	ENSG00000181381|ENST00000682922|DDX60L;DDX60L|p.R1229Pfs*17|1|0.04|ENSG00000181381|chr4:168394589-168394590|-/GAAGAGTAAAGGGTTATGACCAG|frameshift_variant	DDX60L|p.R1229Pfs*17|1|0.04|ENSG00000181381|chr4:168394589-168394590|-/GAAGAGTAAAGGGTTATGACCAG|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	495.297507	988.580462	0.12632	6.2565E-05	-1.3441	-0.00066572	-1.2178	-0.00060315	495.29666025291345	78.24	0.91187	76.5	76.039	76.951	-1.7398	0.076016	-0.00098205	NaN	58.782	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45096			29208	7929;725	23952	23979							0.08571493900251426
LESISTKVI	9	Unmodified	_LESISTKVI_					0	0	0		ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L;DDX60L|p.R1229Pfs*17|1|0.04|ENSG00000181381|chr4:168394589-168394590|-/GAAGAGTAAAGGGTTATGACCAG|frameshift_variant	ENSG00000181381|ENST00000682922|DDX60L;DDX60L|p.R1229Pfs*17|1|0.04|ENSG00000181381|chr4:168394589-168394590|-/GAAGAGTAAAGGGTTATGACCAG|frameshift_variant	DDX60L|p.R1229Pfs*17|1|0.04|ENSG00000181381|chr4:168394589-168394590|-/GAAGAGTAAAGGGTTATGACCAG|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	495.297507	988.580462	-0.29544	-0.00014633	-3.2014	-0.0015856	-3.4968	-0.001732	495.29633792581393	78.753	0.73799	76.401	76.251	76.989	-2.3527	-0.022927	-0.0028219	NaN	58.782	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32371			29209	7929;725	23952	23979							0.08571493900251426
LESISTKVI	9	Unmodified	_LESISTKVI_					0	0	0		ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L;DDX60L|p.R1229Pfs*17|1|0.04|ENSG00000181381|chr4:168394589-168394590|-/GAAGAGTAAAGGGTTATGACCAG|frameshift_variant	ENSG00000181381|ENST00000682922|DDX60L;DDX60L|p.R1229Pfs*17|1|0.04|ENSG00000181381|chr4:168394589-168394590|-/GAAGAGTAAAGGGTTATGACCAG|frameshift_variant	DDX60L|p.R1229Pfs*17|1|0.04|ENSG00000181381|chr4:168394589-168394590|-/GAAGAGTAAAGGGTTATGACCAG|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	495.297507	988.580462	-0.097149	-4.8118E-05	-2.0242	-0.0010026	-2.1214	-0.0010507	495.29574931430767	79.046	0.47794	76.295	76.132	76.61	-2.7514	-0.12894	-0.0016558	NaN	58.782	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109410			29210	7929;725	23952	23979							0.08571493900251426
LESITESENK	10	Unmodified	_LESITESENK_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.820068359375	2	575.285325	1148.5561	1.9092	0.0010984	-1.9029	-0.0010947	0.0063639	3.6611E-06	575.2841082488719	110.72	0.48914	110.72	110.49	110.98	0					22	10	3	0	0	0	0.02661	1	12582	12582		40.778	12.697	1	384800			29211	1212	23953	23980	32454	32454					-0.012238110439284355
LESIYKIII	9	Unmodified	_LESIYKIII_					0	0	0			REV__tr|A0A7D6VW89|A0A7D6VW89_9CLOTAbrBfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03130PE=4SV=1	REV__tr|A0A7D6VW89|A0A7D6VW89_9CLOTAbrBfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03130PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	546.3380737304688	2	546.339175	1090.6638	1.1411	0.00062342	-1.331	-0.00072718	-0.18992	-0.00010376	546.3382946601236	125.32	1.1437	124.27	124	125.15	-1.0519					54	21	3	0	0	0	0.22621	2	9758	9751;9758		71.877	9.7701	1	121800	+		29212	31742	23954	23981	32455;32456	32456					0.12209230348116762
LESIYKIII	9	Unmodified	_LESIYKIII_					0	0	0			REV__tr|A0A7D6VW89|A0A7D6VW89_9CLOTAbrBfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03130PE=4SV=1	REV__tr|A0A7D6VW89|A0A7D6VW89_9CLOTAbrBfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03130PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.3385620117188	2	546.339175	1090.6638	-2.4634	-0.0013458	1.9617	0.0010718	-0.50167	-0.00027408	546.3400848127436	125.68	1.1765	124.27	123.99	125.17	-1.4143					54	23	3	0	0	0	0.19758	1	11961	11961		76.774	5.4784	1	120780	+		29213	31742	23954	23981	32457	32457					0.12209230348116762
LESKDGEIKL	10	Unmodified	_LESKDGEIKL_					0	0	0		nc|ENSG00000170624|Q92629|SGCD;ENSG00000170624|ENST00000337851|SGCD	nc|ENSG00000170624|Q92629|SGCD	nc|ENSG00000170624|Q92629|SGCD	MULTI-MSMS	OvCa99_classI_Rep5	1	566.319580078125	2	566.316428	1130.6183	0.11461	6.4906E-05	3.8507	0.0021807	3.9653	0.0022456	566.3185811801935	56.518	1.4302	56.518	56.261	57.691	0					98	33	5	0	0	0	0.12738	1	4716	4716		106.68	5.0824	1	17871000			29214	7126	23955	23982	32458	32458					0.05821960095045142
LESKTPYLFE	10	Unmodified	_LESKTPYLFE_					0	0	0			REV__tr|A0A7D6ZWZ1|A0A7D6ZWZ1_9CLOTAlanyl-tRNAeditingproteinAlaX-LOS=ClostridiumintestinaleOX=36845GN=HZF06_21065PE=4SV=1	REV__tr|A0A7D6ZWZ1|A0A7D6ZWZ1_9CLOTAlanyl-tRNAeditingproteinAlaX-LOS=ClostridiumintestinaleOX=36845GN=HZF06_21065PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	409.5510559082031	3	409.548295	1225.62306	3.0803	0.0012615	3.0445	0.0012469	6.1248	0.0025084	409.54942248250336	83.432	8.3397	83.432	82.437	90.777	0					407	201	4	0	0	0	0.45953	1	8746	8746		59.931	18.504	1	7486300	+		29215	32306	23956	23983	32459	32459					0.01926844237800651
LESKWPIV	8	Unmodified	_LESKWPIV_					0	0	0		nc|ENSG00000139364|Q14DG7|TMEM132B;ENSG00000139364|ENST00000682704|TMEM132B;nc|ENSG00000139364|Q14DG7-3|TMEM132B	nc|ENSG00000139364|Q14DG7|TMEM132B	nc|ENSG00000139364|Q14DG7|TMEM132B	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.29296875	2	486.28166	970.548768	-1.4894	-0.00072428	-2.0265	-0.00098543	-3.5159	-0.0017097	486.28032557071816	83.174	1.0712	80.878	80.283	81.354	-2.2963					38	21	2	0	0	0	0.028476	1	4671	4671		42.474	0	1	62607			29216	4770	23957	23984	32460	32460					0.062315459369415294
LESLKQALI	9	Unmodified	_LESLKQALI_					0	0	0			REV__nc|ENSG00000198554|O75717-2|WDHD1	REV__nc|ENSG00000198554|O75717-2|WDHD1	MSMS	OvCa9_classI_Rep4_	4	507.81341552734375	2	507.813325	1013.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.55	1	107.83	107.33	108.33	-1.7256								0	0	0	0.02767	1	10058	10058		108.09	0	1		+		29217	23029	23958	23985	32461	32461					0.10583486654184071
LESLYLGGI	9	Unmodified	_LESLYLGGI_					0	0	0			REV__tr|A0A7D7A1Y3|A0A7D7A1Y3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14310PE=4SV=1	REV__tr|A0A7D7A1Y3|A0A7D7A1Y3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14310PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.32989501953125	2	482.771126	963.527698	1.6472	0.00079522	-0.10523	-5.0802E-05	1.542	0.00074442	482.77098712624166	130	0.61694	130	129.72	130.34	0					18	12	3	0	0	0	0.027462	1	15048	15048		24.203	1.1603	1	70371	+		29218	32513	23959	23986	32462	32462					0.04447535837448413
LESLYPLAK	9	Unmodified	_LESLYPLAK_					0	0	0		nc|ENSG00000177374|Q14526|HIC1;ENSG00000177374|ENST00000619757|HIC1	nc|ENSG00000177374|Q14526|HIC1	nc|ENSG00000177374|Q14526|HIC1	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.32373046875	2	517.30005	1032.58555	-0.53566	-0.0002771	1.8578	0.00096106	1.3222	0.00068397	517.3010060926383	103.93	0.39469	103.35	103.18	103.57	-0.57639					11	7	2	0	0	0	0.027441	1	9609	9609		49.442	13.823	1	37907			29219	15192	23960	23987	32463	32463					0.07055797762859584
LESMIPIKM	9	Unmodified	_LESMIPIKM_					0	0	0		ENST00000488966.1_1_6:43481054-43483343:-|nuORF;ENST00000502714.1_1_6:43481208-43483845:-|nuORF;YIPF3|p.M184Gfs*54|1|0.15|ENSG00000137207|chr6:43513184-43513185|AT/-|frameshift_variant;ENSG00000137207|ENST00000372422|YIPF3	ENST00000488966.1_1_6:43481054-43483343:-|nuORF	ENST00000488966.1_1_6:43481054-43483343:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	531.2945556640625	2	531.290314	1060.56607	1.9247	0.0010226	-0.26367	-0.00014009	1.661	0.00088247	531.2903293964418	87.278	3.4509	87.278	86.931	90.382	0					264	83	6	0	0	0	0.16524	2	9442	9442;9481		82.305	11.009	1	200480000			29220	4567	23961	23988	32464;32465	32464					0.03821382156093023
LESMTQATLLE	11	Unmodified	_LESMTQATLLE_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;ENST00000534210.6_1_11:6559916-6579528:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	OvCa9_classI_Rep2	2	618.3130493164062	2	618.313029	1234.6115	-1.7178	-0.0010621	2.83	0.0017498	1.1122	0.00068768	618.3146688164169	63.72	1.6813	60.975	60.427	62.108	-2.7444					85	31	4	0	0	0	0.16394	1	4831	4831		67.494	10.773	1	408350			29221	7829	23962	23989	32466	32466					0.0035827915219215356
LESPSLVPAV	10	Unmodified	_LESPSLVPAV_					0	0	0		ENST00000551964.5_2_12:99039456-99042104:+|nuORF	ENST00000551964.5_2_12:99039456-99042104:+|nuORF	ENST00000551964.5_2_12:99039456-99042104:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.30072021484375	2	506.289682	1010.56481	-1.2008	-0.00060793	-1.2971	-0.00065671	-2.4979	-0.0012646	506.2890745713596	40.961	0.88238	38.006	37.737	38.62	-2.9541					40	16	4	0	0	0	0.026982	1	1859	1859		16.473	0	1	260420			29222	13608	23963	23990	32467	32467					0.0599520738320507
LESQSIKTE	9	Unmodified	_LESQSIKTE_					0	0	0			REV__ENST00000554007.1_1_14:55617501-55618641:-|nuORF	REV__ENST00000554007.1_1_14:55617501-55618641:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.2391357421875	2	517.771854	1033.52915	-1.1028	-0.00057102	2.2379	0.0011587	1.1351	0.00058771	517.7728096708929	33.905	0.76291	33.905	33.728	34.491	0					21	15	2	0	0	0	0.027418	1	1657	1657		40.778	0	1	79578	+		29223	15910	23964	23991	32468	32468					0.01373125135569353
LESQVKGG	8	Unmodified	_LESQVKGG_					0	0	0		nc|ENSG00000144191|Q16281-2|CNGA3;ENSG00000144191|ENST00000272602|CNGA3;nc|ENSG00000144191|Q16281-3|CNGA3	nc|ENSG00000144191|Q16281-2|CNGA3	nc|ENSG00000144191|Q16281-2|CNGA3	MULTI-SECPEP	OvCa99_classI_Rep5	1	409.5863342285156	2	409.224342	816.434132	0.072955	2.9855E-05	0.21235	8.6897E-05	0.2853	0.00011675	409.2242492537431	34.421	0.70229	34.421	34.209	34.911	0					23	14	3	0	0	0	0.028476	1	1652	1652		73.975	8.1716	1	332990			29224	5133	23965	23992	32469	32469					0.018572364550209386
LESRIWRV	8	Unmodified	_LESRIWRV_					0	0	0			REV__tr|A0A553SLR0|A0A553SLR0_NIACIPHPdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21095PE=4SV=1	REV__tr|A0A553SLR0|A0A553SLR0_NIACIPHPdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21095PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.3124389648438	2	529.808908	1057.60326	-1.3206	-0.00069964	-4.1576	-0.0022027	-5.4781	-0.0029024	529.8038544668168	106.03	2.0556	104.01	103.55	105.6	-2.0161					158	39	6	0	0	0	0.66057	1	9723	9723		51.335	0.14276	1	4614300	+		29225	30254	23966	23993	32470	32470					0.07676557808372309
LESRQIAGIL	10	Unmodified	_LESRQIAGIL_					0	0	0		tr|A0A553SGZ3|A0A553SGZ3_NIACIPotassium:protonantiporterOS=NialliacirculansOX=1397GN=CEQ21_11865PE=4SV=1	tr|A0A553SGZ3|A0A553SGZ3_NIACIPotassium:protonantiporterOS=NialliacirculansOX=1397GN=CEQ21_11865PE=4SV=1	tr|A0A553SGZ3|A0A553SGZ3_NIACIPotassium:protonantiporterOS=NialliacirculansOX=1397GN=CEQ21_11865PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	550.3268432617188	2	550.327131	1098.63971	-1.5659	-0.00086175	0.7839	0.0004314	-0.78198	-0.00043035	550.3275336090328	86.284	1.4089	84.064	83.686	85.095	-2.2204					106	27	5	0	0	0	0.40664	1	5180	5180		67.494	2.0283	1	3899600			29226	33213	23967	23994	32471	32471					0.09433389914443069
LESSDLVPE	9	Unmodified	_LESSDLVPE_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.77459716796875	2	494.745305	987.476056	-0.69151	-0.00034212	2.0234	0.0010011	1.3319	0.00065895	494.7460810433136	44.564	0.48983	44.564	44.305	44.795	0					15	10	2	0	0	0	0.027462	1	3046	3046		37.159	0	1	231710			29227	4670	23968	23995	32472	32472					-0.018182526471264282
LESSIKTQDP	10	Unmodified	_LESSIKTQDP_					0	0	0			REV__ENST00000480294.1_1_6:10891760-10930631:+|nuORF	REV__ENST00000480294.1_1_6:10891760-10930631:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	559.2905883789062	2	559.290411	1116.56627	1.0679	0.00059727	-0.91057	-0.00050927	0.15734	8.7999E-05	559.289786703432	123.89	1.2949	122.85	122.51	123.81	-1.0377					64	24	4	0	0	0	0.38315	1	9606	9606		70.816	16.04	1	395230	+		29228	20325	23969	23996	32473	32473					0.012647966813119638
LESVDSYEYI	10	Unmodified	_LESVDSYEYI_					0	0	0		tr|A0A7D7A2E3|A0A7D7A2E3_9CLOTFlavodoxinOS=ClostridiumintestinaleOX=36845GN=HZF06_08100PE=4SV=1	tr|A0A7D7A2E3|A0A7D7A2E3_9CLOTFlavodoxinOS=ClostridiumintestinaleOX=36845GN=HZF06_08100PE=4SV=1	tr|A0A7D7A2E3|A0A7D7A2E3_9CLOTFlavodoxinOS=ClostridiumintestinaleOX=36845GN=HZF06_08100PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	609.2850341796875	2	609.282251	1216.54995	2.33	0.0014196	0.69094	0.00042098	3.021	0.0018406	609.2825364011513	106.61	0.87222	106.61	106.27	107.14	0					50	19	4	0	0	0	0.65434	1	12007	12007		35.618	5.1146	1	1274300			29229	36073	23970	23997	32474	32474					-0.04966329275453063
LESVNLTLI	9	Unmodified	_LESVNLTLI_					0	0	0			REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|18|1|sense	REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|18|1|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.29705810546875	2	501.297507	1000.58046	-0.7406	-0.00037126	0.40125	0.00020114	-0.33935	-0.00017012	501.29758752104317	121.49	1.58	120.14	119.79	121.37	-1.3479					96	30	5	0	0	0	0.28934	1	11434	11434		64.207	0	1	552180	+		29230	28467	23971	23998	32475	32475					0.08019493900246744
LESVPLNLP	9	Unmodified	_LESVPLNLP_					0	0	0		ENSG00000106809|ENST00000375561|OGN	ENSG00000106809|ENST00000375561|OGN	ENSG00000106809|ENST00000375561|OGN	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.2707214355469	2	491.2844	980.554247	1.7069	0.00083855	0.8531	0.00041911	2.56	0.0012577	491.28457472755343	81.953	0.61476	81.953	81.736	82.351	0					30	14	3	0	0	0	0.027462	1	8522	8522		31.955	3.7006	1	799550			29231	2575	23972	23999	32476	32476					0.06319224728747486
LESVPLNLP	9	Unmodified	_LESVPLNLP_					0	0	0		ENSG00000106809|ENST00000375561|OGN	ENSG00000106809|ENST00000375561|OGN	ENSG00000106809|ENST00000375561|OGN	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	491.2844	980.554247	0.99838	0.00049049	2.0248	0.00099475	3.0232	0.0014852	491.28580671216065	84.43	1.6161	81.768	80.828	82.444	-2.6629	-0.09268	0.0010253	NaN	31.955	48	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109940			29232	2575	23972	23999							0.06319224728747486
LESVYLSL	8	Unmodified	_LESVYLSL_					0	0	0			REV__tr|A0A553SPV9|A0A553SPV9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_10880PE=4SV=1	REV__tr|A0A553SPV9|A0A553SPV9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_10880PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	461.2804260253906	2	462.257851	922.501149	-1.3172	-0.00060888	-0.62702	-0.00028985	-1.9442	-0.00089873	462.2575180780771	69.604	0.24133	66.122	65.96	66.201	-3.4812					6	4	2	0	0	0	0.028476	1	5206	5206		19.36	0	1	26122	+		29233	30578	23973	24000	32477	32477					0.0367984694611323
LESYNEALL	9	Unmodified	_LESYNEALL_					0	0	0			REV__ENST00000354485.5_1_9:676972-730286:+|nuORF	REV__ENST00000354485.5_1_9:676972-730286:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	526.2682495117188	2	526.268947	1050.52334	2.0747	0.0010919	-1.9657	-0.0010345	0.10901	5.737E-05	526.2678453425923	120.8	0.49705	120.8	120.65	121.15	0					17	10	2	0	0	0	0.12365	1	13894	13894		90.777	5.4172	1	170860	+		29234	17835	23974	24001	32478	32478					0.00010026623863268469
LESYNEALL	9	Unmodified	_LESYNEALL_					0	0	0			REV__ENST00000354485.5_1_9:676972-730286:+|nuORF	REV__ENST00000354485.5_1_9:676972-730286:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	526.268947	1050.52334	2.0747	0.0010919	-1.9657	-0.0010345	0.10901	5.737E-05	526.2678453425923	120.8	0.49705	120.8	120.65	121.15	0	0	0	NaN	90.777	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170860	+		29235	17835	23974	24001							0.00010026623863268469
LETAYLLVY	9	Unmodified	_LETAYLLVY_					0	0	0		chr22:18173842-18360568|124|21.34|0.08|8.11|+|0|USP18,None|2	chr22:18173842-18360568|124|21.34|0.08|8.11|+|0|USP18,None|2	chr22:18173842-18360568|124|21.34|0.08|8.11|+|0|USP18,None|2	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.7979125976562	2	542.799883	1083.58521	-0.91314	-0.00049565	-3.5722	-0.001939	-4.4854	-0.0024347	542.797800170459	143.72	1.3027	142.28	141.89	143.19	-1.4427					63	24	4	0	0	0	0.58665	1	14081	14081		33.516	0.70317	1	161170			29236	462	23975	24002	32479	32479					0.04676378042995566
LETCRMYID	9	Unmodified	_LETCRMYID_					0	0	0		nc|ENSG00000157680|O75912|DGKI;ENSG00000157680|ENST00000614521|DGKI	nc|ENSG00000157680|O75912|DGKI	nc|ENSG00000157680|O75912|DGKI	MULTI-SECPEP	OvCa9_classI_Rep3	3	571.2914428710938	2	572.262284	1142.51002	0.82254	0.00047071	-1.8684	-0.0010692	-1.0458	-0.00059849	572.2611779941313	121.44	0.94217	120.42	120.06	121.01	-1.0275					34	17	3	0	0	0	0.027462	1	9331	9331		26.693	3.6504	1	67726			29237	5907	23976	24003	32480	32480					-0.05553870751396062
LETEITKAP	9	Unmodified	_LETEITKAP_					0	0	0		tr|A0A553SJ04|A0A553SJ04_NIACIPucRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_15830PE=3SV=1	tr|A0A553SJ04|A0A553SJ04_NIACIPucRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_15830PE=3SV=1	tr|A0A553SJ04|A0A553SJ04_NIACIPucRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_15830PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	502.27435302734375	2	501.279315	1000.54408	-0.37333	-0.00018714	-0.26562	-0.00013315	-0.63895	-0.00032029	501.27909948486945	78.93	0.45179	77.19	76.903	77.355	-1.7398					14	8	2	0	0	0	0.027402	1	6582	6582		56.721	5.3856	1	10470			29238	33448	23977	24004	32481	32481					0.04382617003534506
LETEPDVKEI	10	Unmodified	_LETEPDVKEI_					0	0	0		tr|A0A7D6ZFE3|A0A7D6ZFE3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17595PE=4SV=1	tr|A0A7D6ZFE3|A0A7D6ZFE3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17595PE=4SV=1	tr|A0A7D6ZFE3|A0A7D6ZFE3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17595PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	586.8049926757812	2	586.805894	1171.59723	0.72216	0.00042377	0.80973	0.00047515	1.5319	0.00089892	586.8062667137075	151.32	0.84323	151.32	150.94	151.79	0					21	16	2	0	0	0	0.49558	1	17723	17723		54.776	1.8396	1	69527			29239	35507	23978	24005	32482	32482					0.01829949995521929
LETHLWMP	8	Unmodified	_LETHLWMP_					0	0	0		chr1:144208475-144245238|426|100.67|0.0|23.26|-|1|TE_info:MLT1H1,MLT1H1_dup140,ERVL-MaLR,LTR,acceptor,-,144208113,144208475|None,LINC02802|5;chr1:143382868-144245686|130|65.36|0.66|6.63|-|1|TE_info:MLT1H1,MLT1H1_dup139,ERVL-MaLR,LTR,acceptor,-,143382506,143382868|None,LINC02802|5;chr1:143382868-144245238|410|56.57|0.0|22.43|-|1|TE_info:MLT1H1,MLT1H1_dup139,ERVL-MaLR,LTR,acceptor,-,143382506,143382868|None,LINC02802|5	chr1:144208475-144245238|426|100.67|0.0|23.26|-|1|TE_info:MLT1H1,MLT1H1_dup140,ERVL-MaLR,LTR,acceptor,-,144208113,144208475|None,LINC02802|5	chr1:144208475-144245238|426|100.67|0.0|23.26|-|1|TE_info:MLT1H1,MLT1H1_dup140,ERVL-MaLR,LTR,acceptor,-,144208113,144208475|None,LINC02802|5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.3027954101562	2	513.757495	1025.50044	-0.57404	-0.00029492	-1.3798	-0.00070887	-1.9538	-0.0010038	514.2581716658668	104.52	0.7865	102.4	101.96	102.74	-2.1192					18	14	2	0	0	0	0.028476	1	9430	9430		13.775	0	1	9473.6			29240	239	23979	24006	32483	32483					-0.011292709745930551
LETIDHFVL	9	Unmodified	_LETIDHFVL_					0	0	0			REV__tr|A0A553SK31|A0A553SK31_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_17870PE=4SV=1	REV__tr|A0A553SK31|A0A553SK31_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_17870PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8208618164062	2	543.795132	1085.57571	2.4203	0.0013161	-3.4838	-0.0018945	-1.0635	-0.00057833	543.7931851807788	94.753	0.76848	94.753	94.475	95.244	0					32	17	3	0	0	0	0.027462	1	10289	10289		24.203	0	1	2330800	+		29241	30070	23980	24007	32484	32484					0.03634609757477847
LETIKINKP	9	Unmodified	_LETIKINKP_					0	0	0			REV__tr|A0A7D6ZFL4|A0A7D6ZFL4_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18330PE=3SV=1	REV__tr|A0A7D6ZFL4|A0A7D6ZFL4_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18330PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.322998046875	2	528.326599	1054.63865	0.83538	0.00044135	2.7832	0.0014704	3.6186	0.0019118	528.3278477712166	129.01	4.1824	127.56	127.15	131.33	-1.4565					215	84	4	0	0	0	0.56889	1	12653	12653		35.618	0	1	383740	+		29242	31974	23981	24008	32485	32485					0.11351175545519254
LETITKNIK	9	Unmodified	_LETITKNIK_					0	0	0		nc|ENSG00000164308|Q6P179-3|ERAP2;ENSG00000164308|ENST00000437043|ERAP2;ENST00000513084.5_1_5:96245508-96253306:+|nuORF	nc|ENSG00000164308|Q6P179-3|ERAP2	nc|ENSG00000164308|Q6P179-3|ERAP2	MULTI-MSMS	OvCa99_classI_Rep5	1	530.3262939453125	2	530.324057	1058.63356	1.8999	0.0010076	3.6875	0.0019556	5.5874	0.0029631	530.3259376423567	128.86	1.4011	128.86	128.56	129.96	0					78	29	4	0	0	0	0.030815	1	14945	14945		134.81	5.1281	1	2268400			29243	6444	23982	24009	32486	32486					0.10658871682880999
LETLDYPLP	9	Unmodified	_LETLDYPLP_					0	0	0			REV__tr|A0A553SGE1|A0A553SGE1_NIACIDNAtopoisomeraseOS=NialliacirculansOX=1397GN=CEQ21_10660PE=3SV=1	REV__tr|A0A553SGE1|A0A553SGE1_NIACIDNAtopoisomeraseOS=NialliacirculansOX=1397GN=CEQ21_10660PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.6168212890625	2	530.78169	1059.54883	0.41979	0.00022282	-3.416	-0.0018131	-2.9962	-0.0015903	530.7796578286631	85.182	0.54247	82.536	82.167	82.709	-2.6463					17	10	2	0	0	0	0.027462	1	7172	7172		38.806	8.3025	1	77142	+		29244	29691	23983	24010	32487	32487					0.02143501146269955
LETLDYPLP	9	Unmodified	_LETLDYPLP_					0	0	0			REV__tr|A0A553SGE1|A0A553SGE1_NIACIDNAtopoisomeraseOS=NialliacirculansOX=1397GN=CEQ21_10660PE=3SV=1	REV__tr|A0A553SGE1|A0A553SGE1_NIACIDNAtopoisomeraseOS=NialliacirculansOX=1397GN=CEQ21_10660PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.78169	1059.54883	-1.5417	-0.00081828	-1.8631	-0.00098889	-3.4047	-0.0018072	530.7804858591271	84.14	0.77431	82.594	82.023	82.797	-1.5462	0.048659	0.0010818	NaN	38.806	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35169	+		29245	29691	23983	24010							0.02143501146269955
LETLDYPLP	9	Unmodified	_LETLDYPLP_					0	0	0			REV__tr|A0A553SGE1|A0A553SGE1_NIACIDNAtopoisomeraseOS=NialliacirculansOX=1397GN=CEQ21_10660PE=3SV=1	REV__tr|A0A553SGE1|A0A553SGE1_NIACIDNAtopoisomeraseOS=NialliacirculansOX=1397GN=CEQ21_10660PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	530.78169	1059.54883	-0.96862	-0.00051413	-5.4571	-0.0028965	-6.4257	-0.0034107	530.7790170170591	84.767	0.83102	82.506	82.114	82.945	-2.261	-0.039168	-0.0027334	NaN	38.806	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109810	+		29246	29691	23983	24010							0.02143501146269955
LETLGQEKL	9	Unmodified	_LETLGQEKL_					0	0	0		CON__H-INV:HIT000292931;ENST00000450021.1_1_2:183936291-183936849:-|nuORF;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000562317.1_1_16:78082520-78083381:-|nuORF;ENST00000515599.1_1_5:146086275-146086944:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF	CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8;ENST00000515599.1_1_5:146086275-146086944:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF	ENSG00000170421|ENST00000692008|KRT8	MULTI-MSMS	OvCa99_classI_Rep5	1	515.7957763671875	2	515.792589	1029.57063	2.3606	0.0012176	-0.21668	-0.00011176	2.144	0.0011058	515.7923973133347	75.383	1.3622	75.383	74.962	76.324	0					71	33	4	0	0	0	0.0072874	1	7487	7487		190.26	28.009	1	15214000		+	29247	622;610;13051;13764	23984	24011	32488	32488					0.057023058948516336
LETLGQEKL	9	Unmodified	_LETLGQEKL_					0	0	0		CON__H-INV:HIT000292931;ENST00000450021.1_1_2:183936291-183936849:-|nuORF;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000562317.1_1_16:78082520-78083381:-|nuORF;ENST00000515599.1_1_5:146086275-146086944:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF	CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8;ENST00000515599.1_1_5:146086275-146086944:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF	ENSG00000170421|ENST00000692008|KRT8	MULTI-MSMS	OvCa9_classI_Rep2	2	515.7921142578125	2	515.792589	1029.57063	-0.37236	-0.00019206	-0.12164	-6.2739E-05	-0.49399	-0.0002548	515.7923873174196	76.971	1.4062	75.181	74.688	76.094	-1.7894					73	26	4	0	0	0	0.012051	5	6385	6379;6385;6390;6396;6402		162.25	29.662	1	806780		+	29248	622;610;13051;13764	23984	24011	32489;32490;32491;32492;32493	32490					0.057023058948516336
LETLGQEKL	9	Unmodified	_LETLGQEKL_					0	0	0		CON__H-INV:HIT000292931;ENST00000450021.1_1_2:183936291-183936849:-|nuORF;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000562317.1_1_16:78082520-78083381:-|nuORF;ENST00000515599.1_1_5:146086275-146086944:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF	CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8;ENST00000515599.1_1_5:146086275-146086944:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF	ENSG00000170421|ENST00000692008|KRT8	MULTI-MSMS	OvCa9_classI_Rep3	3	515.7926635742188	2	515.792589	1029.57063	-0.31813	-0.00016409	-0.16739	-8.634E-05	-0.48552	-0.00025043	515.7924732460141	77.113	1.3787	74.742	74.453	75.832	-2.3715					79	26	4	0	0	0	0.0072874	6	4027	4004;4008;4014;4020;4027;4033		190.26	46.375	1	1796900		+	29249	622;610;13051;13764	23984	24011	32494;32495;32496;32497;32498;32499	32498					0.057023058948516336
LETLGQEKL	9	Unmodified	_LETLGQEKL_					0	0	0		CON__H-INV:HIT000292931;ENST00000450021.1_1_2:183936291-183936849:-|nuORF;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000562317.1_1_16:78082520-78083381:-|nuORF;ENST00000515599.1_1_5:146086275-146086944:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF	CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8;ENST00000515599.1_1_5:146086275-146086944:-|nuORF;ENST00000562022.1_1_15:43093683-43094592:-|nuORF	ENSG00000170421|ENST00000692008|KRT8	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7938232421875	2	515.792589	1029.57063	-0.29568	-0.00015251	-0.59432	-0.00030654	-0.89	-0.00045906	515.7921771252891	77.909	1.3362	75.092	74.825	76.162	-2.8165					80	27	4	0	0	0	0.0079861	5	6266	6242;6253;6266;6278;6292		200.16	52.114	1	2628300		+	29250	622;610;13051;13764	23984	24011	32500;32501;32502;32503;32504	32502					0.057023058948516336
LETLHNGLD	9	Unmodified	_LETLHNGLD_					0	0	0			REV__TCEANC|p.F210Gfs*24|1|0.05|ENSG00000176896|chrX:13663135-13663136|-/GGGGA|frameshift_variant	REV__TCEANC|p.F210Gfs*24|1|0.05|ENSG00000176896|chrX:13663135-13663136|-/GGGGA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.26080322265625	2	506.258914	1010.50327	2.3441	0.0011867	-1.6307	-0.00082557	0.71343	0.00036118	506.2580617874395	76.18	0.41043	76.18	75.913	76.324	0					13	9	2	0	0	0	0.027462	1	7610	7610		26.693	0	1	342460	+		29251	21975	23985	24012	32505	32505					-0.0015572431608461557
LETLNHSVL	9	Unmodified	_LETLNHSVL_					0	0	0		nc|ENSG00000103154|Q7Z6G3-2|NECAB2;ENSG00000103154|ENST00000305202|NECAB2	nc|ENSG00000103154|Q7Z6G3-2|NECAB2	nc|ENSG00000103154|Q7Z6G3-2|NECAB2	MULTI-MSMS	OvCa99_classI_Rep5	1	513.2847290039062	2	513.284931	1024.55531	0.26689	0.00013699	-0.692	-0.00035519	-0.42511	-0.0002182	513.2846557669942	45.331	1.1391	45.331	44.84	45.979	0					34	20	2	0	0	0	0.14998	1	3120	3120		84.916	5.2029	1	1173000			29252	2287	23986	24013	32506	32506					0.04401439097682669
LETLPSHKE	9	Unmodified	_LETLPSHKE_					0	0	0		P2RY1|p.R333Ifs*18|1|0.1|ENSG00000169860|chr3:152836779-152836780|-/TTAAGGAAGTCCCAAGTCT|frameshift_variant	P2RY1|p.R333Ifs*18|1|0.1|ENSG00000169860|chr3:152836779-152836780|-/TTAAGGAAGTCCCAAGTCT|frameshift_variant	P2RY1|p.R333Ifs*18|1|0.1|ENSG00000169860|chr3:152836779-152836780|-/TTAAGGAAGTCCCAAGTCT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.2828979492188	2	527.282389	1052.55022	-0.93909	-0.00049517	0.52381	0.0002762	-0.41527	-0.00021897	527.2826200588424	77.489	0.92079	74.673	74.44	75.361	-2.8165					44	18	3	0	0	0	0.3249	1	6220	6220		60.118	3.3972	1	503880			29253	15472	23987	24014	32507	32507					0.026051352350577872
LETLTSPLV	9	Unmodified	_LETLTSPLV_					0	0	0			REV__ENSG00000196664|ENST00000380659|TLR7	REV__ENSG00000196664|ENST00000380659|TLR7	MULTI-MSMS	OvCa9_classI_Rep2	2	486.7837829589844	2	486.784233	971.553913	-0.097442	-4.7433E-05	-3.2568	-0.0015853	-3.3542	-0.0016328	486.78173231785576	73.585	1.8326	71.185	70.167	72	-2.3999					51	34	2	0	0	0	0.19716	1	6007	6007		76.847	2.8719	1	551590	+		29254	22854	23988	24015	32508	32508					0.06699805008906878
LETLTSPLV	9	Unmodified	_LETLTSPLV_					0	0	0			REV__ENSG00000196664|ENST00000380659|TLR7	REV__ENSG00000196664|ENST00000380659|TLR7	MULTI-MSMS	OvCa9_classI_Rep3	3	486.7850036621094	2	486.784233	971.553913	-0.65795	-0.00032028	1.7634	0.00085839	1.1054	0.00053811	486.7849740245438	73.688	1.2894	71.201	70.727	72.016	-2.4873					78	25	4	0	0	0	0.14739	1	3607	3607		85.359	0	1	611920	+		29255	22854	23988	24015	32509	32509					0.06699805008906878
LETLVRLLPAS	11	Unmodified	_LETLVRLLPAS_					0	0	0			REV__ENST00000590135.5_1_19:36233501-36233795:-|nuORF	REV__ENST00000590135.5_1_19:36233501-36233795:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3685913085938	2	606.371538	1210.72852	-0.26856	-0.00016285	-2.8049	-0.0017008	-3.0734	-0.0018636	606.369699493104	145.24	3.8933	143.8	141.64	145.53	-1.4357					226	74	4	0	0	0	0.69808	1	14065	14065		30.318	5.7985	1	336140	+		29256	27915	23989	24016	32510	32510					0.13158805154102993
LETLVRLLPAS	11	Unmodified	_LETLVRLLPAS_					0	0	0			REV__ENST00000590135.5_1_19:36233501-36233795:-|nuORF	REV__ENST00000590135.5_1_19:36233501-36233795:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3689575195312	2	606.371538	1210.72852	-1.3399	-0.00081245	-1.8512	-0.0011225	-3.191	-0.001935	606.3703052098949	148.27	2.4393	146.84	145.43	147.87	-1.4351					149	49	5	0	0	0	0.71789	1	14626	14626		23.523	0.94304	1	591330	+		29257	27915	23989	24016	32511	32511					0.13158805154102993
LETPAFMFR	9	Unmodified	_LETPAFMFR_					0	0	0		ENSG00000105255|ENST00000221856|FSD1	ENSG00000105255|ENST00000221856|FSD1	ENSG00000105255|ENST00000221856|FSD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.8793334960938	2	556.283877	1110.5532	-0.28414	-0.00015806	2.5935	0.0014427	2.3093	0.0012846	556.285071443419	38.357	0.37064	38.357	38.161	38.531	0					13	7	2	0	0	0	0.027462	1	2154	2154		42.396	13.247	1	291820			29258	2436	23990	24017	32512	32512					0.002346870882092844
LETPAFMFR	9	Unmodified	_LETPAFMFR_					0	0	0		ENSG00000105255|ENST00000221856|FSD1	ENSG00000105255|ENST00000221856|FSD1	ENSG00000105255|ENST00000221856|FSD1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	556.283877	1110.5532	0.97118	0.00054025	1.7623	0.00098033	2.7335	0.0015206	556.2845276518543	40.926	0.14797	38.216	38.142	38.29	-2.7097	-0.070266	-0.0008076	NaN	34.173	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5174.9			29259	2436	23990	24017							0.002346870882092844
LETPIKLNKTV	11	Unmodified	_LETPIKLNKTV_					0	0	0		ENSG00000170961|ENST00000303924|HAS2	ENSG00000170961|ENST00000303924|HAS2	ENSG00000170961|ENST00000303924|HAS2	MSMS	OvCa9_classI_Rep4_	4	628.38134765625	2	628.384645	1254.75474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	150.1	1	148.67	148.17	149.17	-1.4344								0	0	0	0.19474	1	14820	14820		20.03	1.7684	1				29260	7159	23991	24018	32513	32513					0.13755074325536043
LETPMDCIAP	10	Unmodified	_LETPMDCIAP_					0	0	0			REV__ENSG00000138356|ENST00000374700|AOX1	REV__ENSG00000138356|ENST00000374700|AOX1	MULTI-MSMS	OvCa99_classI_Rep5	1	545.2515258789062	2	545.251385	1088.48822	0.9221	0.00050278	-1.4941	-0.00081464	-0.57196	-0.00031186	545.2503766855739	156.65	1.0022	156.65	156.4	157.4	0					42	19	4	0	0	0	0.56767	1	18351	18351		45.952	5.1738	1	275930	+		29261	19532	23992	24019	32514	32514					-0.052486754999563345
LETRGAYGPN	10	Unmodified	_LETRGAYGPN_					0	0	0			REV__ENSG00000197653|ENST00000673944|DNAH10;REV__ENSG00000105877|ENST00000409508|DNAH11;REV__CACNA1D-DNAH1|1|fusion;REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1;REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9;REV__ENSG00000115423|ENST00000389394|DNAH6;REV__nc|ENSG00000183914|Q9P225-2|DNAH2	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-MSMS	OvCa99_classI_Rep5	1	539.2703247070312	2	539.269813	1076.52507	-0.67967	-0.00036652	-1.0737	-0.00057902	-1.7534	-0.00094555	539.2690350185279	52.012	0.89502	52.012	51.627	52.522	0					53	20	4	0	0	0	0.20801	1	4067	4067		93.195	2.5946	1	3405000	+		29262	17764;22941;15726;18203;16315;22394;18244	23993	24020	32515	32515					-0.010129195675290248
LETRILPK	8	Unmodified	_LETRILPK_					0	0	0			REV__tr|A0A7D6ZEC6|A0A7D6ZEC6_9CLOTDUF3168domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13150PE=4SV=1	REV__tr|A0A7D6ZEC6|A0A7D6ZEC6_9CLOTDUF3168domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13150PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.68768310546875	2	485.30821	968.601866	0.38075	0.00018478	-0.59998	-0.00029118	-0.21923	-0.00010639	485.30783532582905	113.26	1.0365	111.81	111.11	112.15	-1.4461					31	20	2	0	0	0	0.028476	1	10402	10402		7.6903	0	1	15659	+		29263	31943	23994	24021	32516	32516					0.11630923719610564
LETRILPK	8	Unmodified	_LETRILPK_					0	0	0			REV__tr|A0A7D6ZEC6|A0A7D6ZEC6_9CLOTDUF3168domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13150PE=4SV=1	REV__tr|A0A7D6ZEC6|A0A7D6ZEC6_9CLOTDUF3168domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13150PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	485.30821	968.601866	0.42596	0.00020672	-0.36065	-0.00017503	0.065311	3.1696E-05	485.30802443467786	111.85	2.1217	111.71	110.24	112.36	-0.13961	-0.10354	0.0002147	NaN	7.6903	48	42	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16164	+		29264	31943	23994	24021							0.11630923719610564
LETRILPK	8	Unmodified	_LETRILPK_					0	0	0			REV__tr|A0A7D6ZEC6|A0A7D6ZEC6_9CLOTDUF3168domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13150PE=4SV=1	REV__tr|A0A7D6ZEC6|A0A7D6ZEC6_9CLOTDUF3168domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13150PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	485.30821	968.601866	1.097	0.00053239	-0.82138	-0.00039862	0.27565	0.00013377	485.30753643165355	112.98	1.5322	111.91	110.92	112.45	-1.0753	0.098652	-0.00023249	NaN	7.6903	37	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17773	+		29265	31943	23994	24021							0.11630923719610564
LETRRADSFRY	11	Unmodified	_LETRRADSFRY_					0	0	0		nc|ENSG00000074603|Q6V1X1-6|DPP8;ENSG00000074603|ENST00000300141|DPP8;nc|ENSG00000074603|Q6V1X1|DPP8;nc|ENSG00000074603|Q6V1X1-2|DPP8;nc|ENSG00000074603|Q6V1X1-5|DPP8;DPP8|p.T543Kfs*13|1|0.06|ENSG00000074603|chr15:65467180-65467181|-/AGGTAAATTATTAGTCAATT|frameshift_variant;nc|ENSG00000074603|Q6V1X1-4|DPP8	nc|ENSG00000074603|Q6V1X1-6|DPP8	nc|ENSG00000074603|Q6V1X1-6|DPP8	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.2940673828125	3	471.91263	1412.71606	2.46	0.0011609	2.3331	0.001101	4.7931	0.0022619	471.9134449332927	84.184	0.54085	84.184	84.009	84.55	0					23	12	3	0	0	0	0.026232	1	8790	8790		11.455	0	1	168960			29266	1513	23995	24022	32517	32517					0.026211617437411405
LETTLAKTE	9	Unmodified	_LETTLAKTE_					0	0	0		nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.7502746582031	2	503.276772	1004.53899	-0.81886	-0.00041211	1.2108	0.00060938	0.39196	0.00019726	503.2777214849371	49.562	0.5704	49.562	49.373	49.944	0					26	12	3	0	0	0	0.027462	1	3691	3691		27.882	3.6795	1	408290			29267	14857	23996	24023	32518	32518					0.03690313140896251
LETVPVPAG	9	Unmodified	_LETVPVPAG_					0	0	0		ENST00000525964.6_1_11:134022841-134052943:-|nuORF;ENSG00000151503|ENST00000534548|NCAPD3	ENST00000525964.6_1_11:134022841-134052943:-|nuORF	ENST00000525964.6_1_11:134022841-134052943:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	442.2735290527344	2	441.750193	881.485833	0.9368	0.00041383	0.03547	1.5669E-05	0.97227	0.0004295	441.7500293661972	73.044	0.28013	73.044	72.915	73.195	0					11	6	2	0	0	0	0.027449	1	7166	7166		40.573	24.931	1	136890			29268	5561	23997	24024	32519	32519					0.04034980148901468
LETVRPLF	8	Unmodified	_LETVRPLF_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	OvCa99_classI_Rep5	1	487.7881164550781	2	487.78711	973.559667	2.065	0.0010073	0.19902	9.7081E-05	2.2641	0.0011044	487.7870427213753	101.13	0.87947	101.13	100.86	101.73	0					49	20	3	0	0	0	0.42208	1	11221	11221		85.359	8.5128	1	6341000	+		29269	23506	23998	24025	32520	32520					0.07182948311242399
LETVRPLF	8	Unmodified	_LETVRPLF_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	487.78711	973.559667	2.065	0.0010073	0.19902	9.7081E-05	2.2641	0.0011044	487.7870427213753	101.13	0.87947	101.13	100.86	101.73	0	-0.12595	0.00013063	NaN	85.359	49	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6341000	+		29270	23506	23998	24025							0.07182948311242399
LETVSNFRI	9	Unmodified	_LETVSNFRI_					0	0	0			REV__ENSG00000257594|ENST00000529983|GALNT4	REV__ENSG00000257594|ENST00000529983|GALNT4	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.2703247070312	2	539.798206	1077.58186	-0.63045	-0.00034032	-1.9393	-0.0010468	-2.5697	-0.0013871	539.7969175125196	51.958	0.59549	51.958	51.708	52.304	0					29	13	3	0	0	0	0.027418	1	4067	4067		65.465	0	1	290370	+		29271	23547	23999	24026	32521	32521					0.0461712798901317
LETVYLTAVI	10	Unmodified	_LETVYLTAVI_					0	0	0		tr|A0A7D6ZVE0|A0A7D6ZVE0_9CLOTM50familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13590PE=4SV=1	tr|A0A7D6ZVE0|A0A7D6ZVE0_9CLOTM50familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13590PE=4SV=1	tr|A0A7D6ZVE0|A0A7D6ZVE0_9CLOTM50familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13590PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.3353271484375	2	561.326265	1120.63798	0.19204	0.0001078	-3.673	-0.0020618	-3.481	-0.001954	561.3242955934343	39.123	0.35968	39.123	38.972	39.332	0					12	7	2	0	0	0	0.027021	1	2263	2263		10.265	0	1	57269			29272	35801	24000	24027	32522	32522					0.08248336105816634
LETWLRSCL	9	Unmodified	_LETWLRSCL_					0	0	0		nc|ENSG00000113838|Q9NVR7-2|TBCCD1;ENSG00000113838|ENST00000338733|TBCCD1	nc|ENSG00000113838|Q9NVR7-2|TBCCD1	nc|ENSG00000113838|Q9NVR7-2|TBCCD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.3353271484375	2	560.794609	1119.57467	0.13492	7.566E-05	0.93729	0.00052563	1.0722	0.00060129	560.7952237048348	39.287	0.44897	39.287	38.927	39.376	0					13	9	3	0	0	0	0.027462	1	2263	2263		20.947	6.0821	1	53631			29273	2999	24001	24028	32523	32523					0.01966072116920259
LEVAALLQ	8	Unmodified	_LEVAALLQ_					0	0	0			REV__CNOT2-C3orf19|1|fusion	REV__CNOT2-C3orf19|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	429.749267578125	2	428.760561	855.506569	-0.3435	-0.00014728	-2.73	-0.0011705	-3.0735	-0.0013178	428.7592850741691	31.708	0.54364	28.998	28.888	29.431	-2.7097					14	10	2	0	0	0	0.028476	1	972	972		51.335	5.3835	1	29071	+		29274	16154	24002	24029	32524	32524					0.07303570528563341
LEVAARQLN	9	Unmodified	_LEVAARQLN_					0	0	0			REV__tr|A0A553SP05|A0A553SP05_NIACIATP-dependentproteasesubunitHslVOS=NialliacirculansOX=1397GN=hslVPE=3SV=1	REV__tr|A0A553SP05|A0A553SP05_NIACIATP-dependentproteasesubunitHslVOS=NialliacirculansOX=1397GN=hslVPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.3143615722656	2	507.290548	1012.56654	-1.059	-0.00053724	-2.8879	-0.001465	-3.9469	-0.0020022	507.2890153043957	103.81	0.89025	103.23	102.88	103.77	-0.57639					23	17	2	0	0	0	0.027295	1	9637	9637		84.916	2.675	1	60504	+		29275	30474	24003	24030	32525	32525					0.06076261191810772
LEVAARQLN	9	Unmodified	_LEVAARQLN_					0	0	0			REV__tr|A0A553SP05|A0A553SP05_NIACIATP-dependentproteasesubunitHslVOS=NialliacirculansOX=1397GN=hslVPE=3SV=1	REV__tr|A0A553SP05|A0A553SP05_NIACIATP-dependentproteasesubunitHslVOS=NialliacirculansOX=1397GN=hslVPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	507.290548	1012.56654	-0.10845	-5.5016E-05	-4.4069	-0.0022356	-4.5154	-0.0022906	507.28807452568185	104.62	0.72569	103.19	102.86	103.59	-1.4347	-0.022109	-0.0011954	NaN	84.916	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87406	+		29276	30474	24003	24030							0.06076261191810772
LEVAKARLD	9	Unmodified	_LEVAKARLD_					0	0	0			REV__ENST00000443199.6_1_17:73623504-73629591:-|nuORF	REV__ENST00000443199.6_1_17:73623504-73629591:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	507.7982177734375	2	507.800749	1013.58694	0.86713	0.00044033	1.0217	0.00051884	1.8889	0.00095917	507.8013382718737	101.99	0.4738	101.99	101.78	102.25	0					17	10	2	0	0	0	0.37135	1	11346	11346		54.776	0.01164	1	664450	+		29277	17890	24004	24031	32526	32526					0.08069431851606623
LEVARGLKP	9	Unmodified	_LEVARGLKP_					0	0	0		ENST00000360403.6_1_1:45316663-45323405:-|nuORF	ENST00000360403.6_1_1:45316663-45323405:-|nuORF	ENST00000360403.6_1_1:45316663-45323405:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.248779296875	2	491.805834	981.597115	-0.43721	-0.00021502	-0.25305	-0.00012445	-0.69026	-0.00033947	491.80582547359285	44.835	0.4047	44.835	44.573	44.977	0					11	8	2	0	0	0	0.027462	1	3053	3053		21.96	1.9631	1	89572			29278	10771	24005	24032	32527	32527					0.10558039576858391
LEVARGLKP	9	Unmodified	_LEVARGLKP_					0	0	0		ENST00000360403.6_1_1:45316663-45323405:-|nuORF	ENST00000360403.6_1_1:45316663-45323405:-|nuORF	ENST00000360403.6_1_1:45316663-45323405:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	491.80499267578125	2	491.805834	981.597115	-0.7249	-0.00035651	0.19597	9.6379E-05	-0.52893	-0.00026013	491.8058519690199	97.875	1.9352	96.116	95.414	97.349	-1.7595					68	37	3	0	0	0	0.21231	1	6529	6529		74.255	2.3776	1	776120			29279	10771	24005	24032	32528	32528					0.10558039576858391
LEVATHCSRMV	11	Unmodified	_LEVATHCSRMV_					0	0	0			REV__ENSG00000071537|ENST00000336735|SEL1L	REV__ENSG00000071537|ENST00000336735|SEL1L	MULTI-MSMS	OvCa99_classI_Rep5	1	623.3555908203125	2	623.307558	1244.60056	1.6787	0.0010463	-1.5012	-0.00093572	0.17744	0.0001106	623.3064371705832	117.28	1.7626	117.28	116.82	118.58	0					54	37	3	0	0	0	0.69424	1	13588	13588		31.634	1.1306	1	166540	+		29280	16902	24006	24033	32529	32529					-0.011954017031257536
LEVDAVAADIL	11	Unmodified	_LEVDAVAADIL_					0	0	0		nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L	nc|ENSG00000009413|O60673-2|REV3L	nc|ENSG00000009413|O60673-2|REV3L	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.8101806640625	2	564.810979	1127.6074	-0.32119	-0.00018141	-0.53819	-0.00030397	-0.85937	-0.00048538	564.8105266478774	146.61	1.7739	145.17	144.75	146.53	-1.4357					75	34	3	0	0	0	0.69081	1	14429	14429		32.812	0	1	178590			29281	929	24007	24034	32530	32530					0.048705577207556416
LEVDPIVL	8	Unmodified	_LEVDPIVL_					0	0	0			REV__ENSG00000179941|ENST00000650064|BBS10	REV__ENSG00000179941|ENST00000650064|BBS10	MULTI-MSMS	OvCa9_classI_Rep3	3	449.2699890136719	2	449.268219	896.521884	0.9461	0.00042505	0.42185	0.00018952	1.3679	0.00061457	449.26835717612227	113.5	2.9115	112.42	112.15	115.06	-1.0753					133	57	4	0	0	0	0.69415	1	8338	8338		44.531	0	1	1514000	+		29282	22148	24008	24035	32531	32531					0.06948437325752366
LEVDPNIQAM	10	Unmodified	_LEVDPNIQAM_					0	0	0		ENST00000430398.2_1_1:73570714-73571443:+|nuORF	ENST00000430398.2_1_1:73570714-73571443:+|nuORF	ENST00000430398.2_1_1:73570714-73571443:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	565.3091430664062	2	565.281531	1128.54851	0.10192	5.7614E-05	-3.4326	-0.0019404	-3.3307	-0.0018828	565.2795370800077	95.916	1.1917	94.888	94.516	95.707	-1.0281					32	23	2	0	0	0	0.027632	1	8730	8730		98.629	10.875	1	95780			29283	11788	24009	24036	32532	32532					-0.010622418452157945
LEVETAKER	9	Unmodified	_LEVETAKER_					0	0	0			REV__NF1-RAB11FIP4|2|fusion	REV__NF1-RAB11FIP4|2|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.7484741210938	2	537.793121	1073.57169	-0.29846	-0.00016051	-0.95487	-0.00051352	-1.2533	-0.00067404	537.792455593129	35.822	0.64371	35.822	35.614	36.257	0					36	13	4	0	0	0	0.027462	1	1860	1860		11.511	0.64546	1	1622000	+		29284	29248	24010	24037	32533	32533					0.03784520263752711
LEVGAEEKY	9	Unmodified	_LEVGAEEKY_					0	0	0			REV__tr|A0A553SPZ9|A0A553SPZ9_NIACIUPF0340proteinCEQ21_14335OS=NialliacirculansOX=1397GN=CEQ21_14335PE=3SV=1	REV__tr|A0A553SPZ9|A0A553SPZ9_NIACIUPF0340proteinCEQ21_14335OS=NialliacirculansOX=1397GN=CEQ21_14335PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.8369750976562	2	519.261122	1036.50769	0.066025	3.4284E-05	-1.1661	-0.00060553	-1.1001	-0.00057124	519.2614326554026	114.72	0.88834	114.61	114.31	115.19	-0.11777					32	17	3	0	0	0	0.027461	1	10987	10987		49.442	2.6751	1	24021	+		29285	30589	24011	24038	32534	32534					-0.009102598931804096
LEVGAEEKY	9	Unmodified	_LEVGAEEKY_					0	0	0			REV__tr|A0A553SPZ9|A0A553SPZ9_NIACIUPF0340proteinCEQ21_14335OS=NialliacirculansOX=1397GN=CEQ21_14335PE=3SV=1	REV__tr|A0A553SPZ9|A0A553SPZ9_NIACIUPF0340proteinCEQ21_14335OS=NialliacirculansOX=1397GN=CEQ21_14335PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	519.261122	1036.50769	-0.10743	-5.5787E-05	0.37865	0.00019662	0.27122	0.00014083	519.2613296216111	115.68	0.78929	114.64	114.35	115.14	-1.0414	0.053065	-4.2395E-05	NaN	74.255	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26730	+		29286	30589	24011	24038							-0.009102598931804096
LEVGAEEKY	9	Unmodified	_LEVGAEEKY_					0	0	0			REV__tr|A0A553SPZ9|A0A553SPZ9_NIACIUPF0340proteinCEQ21_14335OS=NialliacirculansOX=1397GN=CEQ21_14335PE=3SV=1	REV__tr|A0A553SPZ9|A0A553SPZ9_NIACIUPF0340proteinCEQ21_14335OS=NialliacirculansOX=1397GN=CEQ21_14335PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	519.261122	1036.50769	-0.1463	-7.5968E-05	0.74892	0.00038889	0.60262	0.00031292	519.2614590543487	115.9	1.0907	114.52	114.08	115.17	-1.3872	-0.071972	0.00034214	NaN	74.255	32	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43275	+		29287	30589	24011	24038							-0.009102598931804096
LEVGELAKL	9	Unmodified	_LEVGELAKL_					0	0	0		ENSG00000121579|ENST00000240922|NAA50;ENST00000467022.1_1_3:113442441-113464796:-|nuORF	ENSG00000121579|ENST00000240922|NAA50	ENSG00000121579|ENST00000240922|NAA50	MULTI-MSMS	OvCa9_classI_Rep3	3	486.2932434082031	2	486.292225	970.569897	-0.053352	-2.5945E-05	2.3396	0.0011377	2.2862	0.0011118	486.2922398219659	106.18	1.1304	104.84	104.46	105.59	-1.3482					61	21	4	0	0	0	0.26076	1	7478	7478		67.494	19.836	1	157350			29288	3489	24012	24039	32535	32535					0.08343511245811897
LEVGELAKL	9	Unmodified	_LEVGELAKL_					0	0	0		ENSG00000121579|ENST00000240922|NAA50;ENST00000467022.1_1_3:113442441-113464796:-|nuORF	ENSG00000121579|ENST00000240922|NAA50	ENSG00000121579|ENST00000240922|NAA50	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.2911376953125	2	486.292225	970.569897	-0.98432	-0.00047866	0.98699	0.00047996	0.0026715	1.2991E-06	486.2925923693071	106.74	1.7572	104.86	103.83	105.59	-1.8785					56	33	3	0	0	0	0.14855	1	9719	9719		85.161	16.374	1	149940			29289	3489	24012	24039	32536	32536					0.08343511245811897
LEVGELAKL	9	Unmodified	_LEVGELAKL_					0	0	0		ENSG00000121579|ENST00000240922|NAA50;ENST00000467022.1_1_3:113442441-113464796:-|nuORF	ENSG00000121579|ENST00000240922|NAA50	ENSG00000121579|ENST00000240922|NAA50	MULTI-MATCH	OvCa9_classI_Rep2	2		2	486.292225	970.569897	-0.23945	-0.00011644	2.0481	0.00099598	1.8087	0.00087954	486.29217778157715	105.41	0.94705	104.97	104.6	105.55	-0.43642	-0.010245	0.0011904	NaN	85.161	55	18	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150020			29290	3489	24012	24039							0.08343511245811897
LEVGGVLTLL	10	Unmodified	_LEVGGVLTLL_					0	0	0		nc|ENSG00000198520|Q6PIY5-2|ARMH1;ENST00000357508.5_1_1:45155363-45190065:+|nuORF;ENSG00000198520|ENST00000535358|ARMH1	nc|ENSG00000198520|Q6PIY5-2|ARMH1	nc|ENSG00000198520|Q6PIY5-2|ARMH1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.3146057128906	2	507.3157	1012.61685	-1.2891	-0.00065398	1.1986	0.00060809	-0.090461	-4.5892E-05	507.3161252150664	116.87	1.585	116.74	116.42	118	-0.12869					86	31	4	0	0	0	0.6104	1	11166	11166		40.778	6.6056	1	305710			29291	8823	24013	24040	32537	32537					0.11104370796954299
LEVGVDAQLPA	11	Unmodified	_LEVGVDAQLPA_					0	0	0		ENSG00000184271|ENST00000333640|POU6F1	ENSG00000184271|ENST00000333640|POU6F1	ENSG00000184271|ENST00000333640|POU6F1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.7736206054688	2	556.303321	1110.59209	1.077	0.00059917	-1.4162	-0.00078785	-0.33918	-0.00018869	556.3029789873983	97.767	1.1613	95.388	95.116	96.277	-2.3786					42	21	4	0	0	0	0.025822	1	8664	8664		63.534	12.341	1	96152			29292	8142	24014	24041	32538	32538					0.04121690923557253
LEVGVDAQLPA	11	Unmodified	_LEVGVDAQLPA_					0	0	0		ENSG00000184271|ENST00000333640|POU6F1	ENSG00000184271|ENST00000333640|POU6F1	ENSG00000184271|ENST00000333640|POU6F1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	556.303321	1110.59209	0.83885	0.00046665	-0.99736	-0.00055484	-0.15852	-8.8183E-05	556.3027063793336	96.419	1.1365	95.391	94.764	95.9	-1.0281	-0.023733	-0.00074832	NaN	63.534	36	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64879			29293	8142	24014	24041							0.04121690923557253
LEVGVDAQLPA	11	Unmodified	_LEVGVDAQLPA_					0	0	0		ENSG00000184271|ENST00000333640|POU6F1	ENSG00000184271|ENST00000333640|POU6F1	ENSG00000184271|ENST00000333640|POU6F1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	556.303321	1110.59209	-1.0344	-0.00057545	1.5493	0.00086189	0.51488	0.00028643	556.3041543723176	97.224	1.106	95.464	95.105	96.211	-1.7595	0.049968	0.0020851	NaN	63.534	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84244			29294	8142	24014	24041							0.04121690923557253
LEVHQEVK	8	Unmodified	_LEVHQEVK_					0	0	0			REV__ENST00000597453.1_1_19:41848042-41854244:-|nuORF	REV__ENST00000597453.1_1_19:41848042-41854244:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	491.2724304199219	2	491.271824	980.529095	-0.59672	-0.00029315	-0.39974	-0.00019638	-0.99646	-0.00048953	491.27182220102685	48.05	0.73129	48.05	47.854	48.585	0					19	16	2	0	0	0	0.56195	1	3504	3504		71.296	2.5089	1	937060	+		29295	17711	24015	24042	32539	32539					0.03805169926192775
LEVHQEVK	8	Unmodified	_LEVHQEVK_					0	0	0			REV__ENST00000597453.1_1_19:41848042-41854244:-|nuORF	REV__ENST00000597453.1_1_19:41848042-41854244:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	491.271824	980.529095	-0.59672	-0.00029315	-0.39974	-0.00019638	-0.99646	-0.00048953	491.27182220102685	48.05	0.73129	48.05	47.854	48.585	0	0	0	NaN	71.296	19	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	937060	+		29296	17711	24015	24042							0.03805169926192775
LEVIKSMAE	9	Unmodified	_LEVIKSMAE_					0	0	0			REV__ENSG00000157827|ENST00000288670|FMNL2	REV__ENSG00000157827|ENST00000288670|FMNL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.7931823730469	2	510.275718	1018.53688	1.7319	0.00088374	-3.2037	-0.0016348	-1.4718	-0.00075105	510.2740359520949	135.66	0.51585	135.66	135.41	135.92	0					17	10	2	0	0	0	0.027461	1	15811	15811		40.778	8.8233	1	162100	+		29297	20535	24016	24043	32540	32540					0.028355611314509588
LEVIKVLN	8	Unmodified	_LEVIKVLN_					0	0	0			REV__tr|A0A7D6ZJ33|A0A7D6ZJ33_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06985PE=4SV=1	REV__tr|A0A7D6ZJ33|A0A7D6ZJ33_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06985PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.2852783203125	2	464.29731	926.580068	0.1679	7.7956E-05	-1.7355	-0.00080578	-1.5676	-0.00072783	464.2963311666721	96.495	0.35858	94.069	93.913	94.271	-2.4256					12	6	2	0	0	0	0.028476	1	8522	8522		49.442	0	1	19476	+		29298	32076	24017	24044	32541	32541					0.11384118971045609
LEVILGDIIS	10	Unmodified	_LEVILGDIIS_					0	0	0		tr|A0A553SJ35|A0A553SJ35_NIACIGluconeogenesisfactorOS=NialliacirculansOX=1397GN=CEQ21_16000PE=3SV=1	tr|A0A553SJ35|A0A553SJ35_NIACIGluconeogenesisfactorOS=NialliacirculansOX=1397GN=CEQ21_16000PE=3SV=1	tr|A0A553SJ35|A0A553SJ35_NIACIGluconeogenesisfactorOS=NialliacirculansOX=1397GN=CEQ21_16000PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.8045654296875	2	536.31844	1070.62233	-0.96577	-0.00051796	3.6155	0.0019391	2.6497	0.0014211	536.3210315204407	65.727	0.63327	65.727	65.271	65.904	0					20	15	3	0	0	0	0.026802	1	5988	5988		26.693	0	1	363020			29299	33459	24018	24045	32542	32542					0.08984049588775633
LEVILRPKI	9	Unmodified	_LEVILRPKI_					0	0	0		ENST00000593523.1_1_19:41897706-41903233:-|nuORF;ENSG00000077348|ENST00000221233|EXOSC5	ENST00000593523.1_1_19:41897706-41903233:-|nuORF	ENST00000593523.1_1_19:41897706-41903233:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.83251953125	2	540.860609	1079.70667	-2.1248	-0.0011492	-3.7588	-0.002033	-5.8836	-0.0031822	540.8584672956786	125.06	0.20982	123.67	123.54	123.75	-1.3908					5	3	2	0	0	0	0.027462	1	11868	11868		47.657	24.135	1	5696			29300	1570	24019	24046	32543	32543					0.17000045196186875
LEVIVCILH	9	Unmodified	_LEVIVCILH_					0	0	0		ENST00000549479.1_1_12:76462365-76462575:-|nuORF	ENST00000549479.1_1_12:76462365-76462575:-|nuORF	ENST00000549479.1_1_12:76462365-76462575:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	519.806396484375	2	519.804445	1037.59434	0.30325	0.00015763	3.2491	0.0016889	3.5524	0.0018465	519.8059790400328	40.39	1.3312	37.68	37.452	38.783	-2.7097					65	26	4	0	0	0	0.59983	1	2035	2035		31.955	2.8053	1	288990			29301	13575	24020	24047	32544	32544					0.07704448127697106
LEVKDWEV	8	Unmodified	_LEVKDWEV_					0	0	0		tr|A0A553SIJ2|A0A553SIJ2_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14860PE=4SV=1	tr|A0A553SIJ2|A0A553SIJ2_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14860PE=4SV=1	tr|A0A553SIJ2|A0A553SIJ2_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14860PE=4SV=1	MSMS	OvCa9_classI_Rep4_	4	509.2635192871094	2	509.266207	1016.51786	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.567	1	29.872	29.372	30.372	-2.6954								0	0	0	0.30129	1	791	791		19.36	1.0356	1				29302	33386	24021	24048	32545	32545					0.010263478320553077
LEVKEENGVL	10	Unmodified	_LEVKEENGVL_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4;PDIA4|p.D110Kfs*24|1|0.12|ENSG00000155660|chr7:149019136-149019139|TATC/-|frameshift_variant	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.3106079101562	2	565.308603	1128.60265	1.1361	0.00064226	-2.3807	-0.0013458	-1.2445	-0.00070355	565.3072068648027	98.126	2.7067	95.747	95.368	98.074	-2.3786					164	52	5	0	0	0	0.13777	1	8747	8747		104.06	0	1	4552600			29303	5795	24022	24049	32546	32546					0.04349673578008151
LEVKHCTDQ	9	Unmodified	_LEVKHCTDQ_					0	0	0		ENSG00000197745|ENST00000358585|SCGB1D4	ENSG00000197745|ENST00000358585|SCGB1D4	ENSG00000197745|ENST00000358585|SCGB1D4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.2962646484375	2	536.758223	1071.50189	-1.0522	-0.00056478	-3.6166	-0.0019412	-4.6688	-0.002506	536.7568597212793	90.908	1.172	88.333	88.007	89.179	-2.575					55	22	3	0	0	0	0.027462	1	7920	7920		32.812	0	1	325570			29304	8741	24023	24050	32547	32547					-0.030996816764854884
LEVKLWYF	8	Unmodified	_LEVKLWYF_					0	0	0			REV__tr|A0A553SQQ7|A0A553SQQ7_NIACICytoplasmicproteinOS=NialliacirculansOX=1397GN=CEQ21_07095PE=4SV=1	REV__tr|A0A553SQQ7|A0A553SQQ7_NIACICytoplasmicproteinOS=NialliacirculansOX=1397GN=CEQ21_07095PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	550.2811279296875	2	549.305136	1096.59572	-1.0104	-0.00055503	-3.0841	-0.0016941	-4.0945	-0.0022491	549.3033440842347	94.738	1.4486	92.843	92.511	93.96	-1.8956					65	28	3	0	0	0	0.028476	1	6206	6206		28.254	0.17279	1	531330	+		29305	30654	24024	24051	32548	32548					0.051284054880852636
LEVKNLVIKEA	11	Unmodified	_LEVKNLVIKEA_					0	0	0			REV__tr|A0A7D6VTY3|A0A7D6VTY3_9CLOTLonproteaseOS=ClostridiumintestinaleOX=36845GN=lonPE=2SV=1	REV__tr|A0A7D6VTY3|A0A7D6VTY3_9CLOTLonproteaseOS=ClostridiumintestinaleOX=36845GN=lonPE=2SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	628.3832397460938	2	628.384645	1254.75474	-1.7019	-0.0010694	-1.8744	-0.0011778	-3.5763	-0.0022473	628.3832559511075	147.74	1.901	146.3	145.18	147.08	-1.435					72	37	2	0	0	0	0.7046	1	14608	14608		28.081	1.3886	1	277210	+		29306	31638	24025	24052	32549	32549					0.13755074325536043
LEVKNSFGVK	10	Unmodified	_LEVKNSFGVK_					0	0	0			REV__nc|ENSG00000111860|Q5SZL2-3|CEP85L	REV__nc|ENSG00000111860|Q5SZL2-3|CEP85L	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.8344116210938	2	560.821681	1119.62881	2.6724	0.0014987	-1.4783	-0.00082909	1.194	0.00066963	560.8212383060956	85.739	0.36816	85.739	85.502	85.87	0					11	8	2	0	0	0	0.027028	1	8994	8994		18.262	0	1	180420	+		29307	28798	24026	24053	32550	32550					0.07377987540144204
LEVKQELL	8	Unmodified	_LEVKQELL_					0	0	0			REV__ENST00000557680.1_1_14:39648378-39651535:+|nuORF	REV__ENST00000557680.1_1_14:39648378-39651535:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	486.2928161621094	2	486.292225	970.569897	-0.054457	-2.6482E-05	0.23113	0.0001124	0.17667	8.5915E-05	486.2921627370028	105.27	0.65807	105.27	105	105.66	0					29	14	3	0	0	0	0.40148	1	11828	11828		87.754	0	1	683790	+		29308	17461	24027	24054	32551	32551					0.08343511245811897
LEVLKKKD	8	Unmodified	_LEVLKKKD_					0	0	0		tr|A0A553SIE5|A0A553SIE5_NIACIGIY-YIGnucleasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_14600PE=4SV=1	tr|A0A553SIE5|A0A553SIE5_NIACIGIY-YIGnucleasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_14600PE=4SV=1	tr|A0A553SIE5|A0A553SIE5_NIACIGIY-YIGnucleasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_14600PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.8100280761719	2	486.808042	971.601532	-0.096422	-4.6939E-05	4.2465	0.0020672	4.1501	0.0020203	486.80997360124303	130.23	1.3225	129.12	128.88	130.21	-1.1121					55	26	3	0	0	0	0.64026	1	10343	10343		55.504	0	1	142420			29309	33373	24028	24055	32552	32552					0.11459503999753906
LEVLSAKV	8	Unmodified	_LEVLSAKV_					0	0	0		ENST00000309859.8_1_16:23478376-23478613:-|nuORF	ENST00000309859.8_1_16:23478376-23478613:-|nuORF	ENST00000309859.8_1_16:23478376-23478613:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	429.7692565917969	2	429.768386	857.522219	-0.087412	-3.7567E-05	0.094535	4.0628E-05	0.0071228	3.0611E-06	429.7682538110629	81.723	1.406	79.04	78.767	80.173	-2.6829					55	28	3	0	0	0	0.48084	1	6743	6743		79.451	5.4763	1	341820			29310	10278	24029	24056	32553	32553					0.08775857045611701
LEVLSGERL	9	Unmodified	_LEVLSGERL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.295166015625	2	508.292756	1014.57096	2.2089	0.0011228	2.1205	0.0010778	4.3294	0.0022006	508.293375579791	85.962	0.64643	85.962	85.624	86.271	0					22	15	2	0	0	0	0.060996	1	9040	9040		112.41	0	1	4466400			29311	3083	24030	24057	32554	32554					0.06425725614712974
LEVLSGERL	9	Unmodified	_LEVLSGERL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	508.292756	1014.57096	0.54712	0.00027809	-1.6894	-0.00085869	-1.1422	-0.00058059	508.29189289123644	87.016	1.2232	85.585	85.015	86.239	-1.4311	-0.15476	-0.0018102	NaN	112.41	39	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39565			29312	3083	24030	24057							0.06425725614712974
LEVLSGERL	9	Unmodified	_LEVLSGERL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	508.292756	1014.57096	-1.007	-0.00051184	1.3598	0.00069118	0.35284	0.00017934	508.2928919254269	87.849	0.82449	85.673	85.241	86.066	-2.1768	-0.067241	0.0012895	NaN	112.41	17	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36397			29313	3083	24030	24057							0.06425725614712974
LEVLWLPCT	9	Unmodified	_LEVLWLPCT_					0	0	0		ENST00000406316.6_3_2:51255552-51255684:-|nuORF	ENST00000406316.6_3_2:51255552-51255684:-|nuORF	ENST00000406316.6_3_2:51255552-51255684:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.2737426757812	2	537.288628	1072.5627	0.18484	9.931E-05	2.1331	0.0011461	2.318	0.0012454	537.7917205329063	45.231	0.91992	45.231	44.662	45.582	0					33	20	2	0	0	0	0.027462	1	3112	3112		16.473	0	1	734750			29314	11480	24031	24058	32555	32555					0.02932455373729681
LEVLYILL	8	Unmodified	_LEVLYILL_					0	0	0			REV__tr|A0A553SLP2|A0A553SLP2_NIACIDUF421domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21010PE=3SV=1	REV__tr|A0A553SLP2|A0A553SLP2_NIACIDUF421domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21010PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.2704772949219	2	488.309887	974.60522	-1.165	-0.0005689	-2.5774	-0.0012586	-3.7424	-0.0018275	488.30858784581363	65.858	0.2793	65.858	65.665	65.945	0					10	6	2	0	0	0	0.028476	1	6077	6077		44.531	7.5026	1	270950	+		29315	30246	24032	24059	32556	32556					0.11690173773638435
LEVMETQLP	9	Unmodified	_LEVMETQLP_					0	0	0			REV__ENSG00000188338|ENST00000614032|SLC38A3	REV__ENSG00000188338|ENST00000614032|SLC38A3	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.319091796875	2	530.273175	1058.5318	-0.22528	-0.00011946	0.1479	7.8426E-05	-0.077382	-4.1033E-05	530.2732222124316	71.291	0.39486	71.291	70.994	71.389	0					13	9	2	0	0	0	0.027118	1	6875	6875		74.255	0	1	308990	+		29316	22708	24033	24060	32557	32557					0.00487257268855501
LEVNEAELL	9	Unmodified	_LEVNEAELL_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.2783813476562	2	515.276772	1028.53899	2.1426	0.001104	-0.080892	-4.1682E-05	2.0617	0.0010624	515.2765929433157	120.81	1.1956	120.81	120.61	121.8	0					64	26	4	0	0	0	0.0076265	1	13897	13897		195.06	28.385	1	2042800			29317	7686	24034	24061	32558	32558					0.02586313140909624
LEVNEIATLNQ	11	Unmodified	_LEVNEIATLNQ_					0	0	0			REV__tr|A0A7D6ZXT9|A0A7D6ZXT9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22875PE=3SV=1	REV__tr|A0A7D6ZXT9|A0A7D6ZXT9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22875PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	622.3324584960938	2	622.330067	1242.64558	1.7813	0.0011086	0.9929	0.00061791	2.7742	0.0017265	622.3307863066174	100.02	0.58589	100.02	99.777	100.36	0					28	13	3	0	0	0	0.092159	1	11072	11072		123.21	24.626	1	1029200	+		29318	32345	24035	24062	32559	32559					0.03396443635438118
LEVNEIATLNQ	11	Unmodified	_LEVNEIATLNQ_					0	0	0			REV__tr|A0A7D6ZXT9|A0A7D6ZXT9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22875PE=3SV=1	REV__tr|A0A7D6ZXT9|A0A7D6ZXT9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22875PE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	622.330067	1242.64558	1.7813	0.0011086	0.9929	0.00061791	2.7742	0.0017265	622.3307863066174	100.02	0.58589	100.02	99.777	100.36	0	0	0	NaN	123.21	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1029200	+		29319	32345	24035	24062							0.03396443635438118
LEVPLCLLL	9	Unmodified	_LEVPLCLLL_					0	0	0			REV__ENSG00000188994|ENST00000369577|ZNF292	REV__ENSG00000188994|ENST00000369577|ZNF292	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3233947753906	2	506.809196	1011.60384	-1.429	-0.00072423	3.1181	0.0015803	1.6891	0.00085605	506.8105511307101	103.7	1.3564	103.7	103.18	104.54	0					64	31	4	0	0	0	0.027462	1	11671	11671		40.573	0	1	3048300	+		29320	22753	24036	24063	32560	32560					0.09850216413201451
LEVQIQRLNI	10	Unmodified	_LEVQIQRLNI_					0	0	0		nc|ENSG00000181984|A6NN73|GOLGA8CP;ENSG00000153684|ENST00000526619|GOLGA8F;ENSG00000261739|ENST00000562295|GOLGA8S;ENSG00000183629|ENST00000525590|GOLGA8G	nc|ENSG00000181984|A6NN73|GOLGA8CP	nc|ENSG00000181984|A6NN73|GOLGA8CP	MULTI-MSMS	OvCa9_classI_Rep2	2	409.2467956542969	3	409.24695	1224.71902	0.47988	0.00019639	-0.47505	-0.00019441	0.0048359	1.9791E-06	409.2467621212051	60.008	1.3036	57.237	56.672	57.976	-2.7702					78	24	4	0	0	0	0.59317	1	4392	4392		42.864	0	1	597550			29321	5687	24037	24064	32561	32561					0.11565036868569223
LEVQVRESL	9	Unmodified	_LEVQVRESL_					0	0	0		ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1	ENSG00000168394|ENST00000354258|TAP1	ENSG00000168394|ENST00000354258|TAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.8054809570312	2	536.803488	1071.59242	2.43	0.0013044	-0.60496	-0.00032475	1.8251	0.0009797	536.8034212118616	84.361	0.87691	84.361	83.965	84.841	0					36	20	2	0	0	0	0.025835	1	8809	8809		140.11	30.634	1	1872900			29322	6901	24038	24065	32562	32562					0.059491106434506946
LEVRPGAR	8	Unmodified	_LEVRPGAR_					0	0	0		ENST00000427076.5_1_7:44005990-44026228:-|nuORF	ENST00000427076.5_1_7:44005990-44026228:-|nuORF	ENST00000427076.5_1_7:44005990-44026228:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	449.24871826171875	2	449.266876	896.519199	0.46286	0.00020795	-3.5492	-0.0015946	-3.0864	-0.0013866	449.26452045527265	33.095	0.68341	33.095	32.602	33.285	0					18	13	2	0	0	0	0.028476	1	1502	1502		40.778	16.575	1	23012			29323	11750	24039	24066	32563	32563					0.06680026711478604
LEVRPLAVTGL	11	Unmodified	_LEVRPLAVTGL_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	MULTI-MSMS	OvCa9_classI_Rep2	2	584.35595703125	2	584.358431	1166.70231	-2.312	-0.0013511	-1.149	-0.00067141	-3.461	-0.0020225	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.72473	1	14572	14572		19.104	0.84144	1	180810			29324	4000	24040	24067	32564	32564					0.1256253598260173
LEVRTGPKP	9	Unmodified	_LEVRTGPKP_					0	0	0		nc|ENSG00000152402|P33402-3|GUCY1A2;ENSG00000152402|ENST00000526355|GUCY1A2;nc|ENSG00000152402|P33402-2|GUCY1A2	nc|ENSG00000152402|P33402-3|GUCY1A2	nc|ENSG00000152402|P33402-3|GUCY1A2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.9444580078125	2	498.795466	995.57638	-1.0358	-0.00051665	0.70896	0.00035362	-0.32683	-0.00016302	498.79582053937395	81.747	1.3105	79.064	78.619	79.93	-2.683					45	26	3	0	0	0	0.027411	1	6728	6728		54.776	0	1	185410			29325	15100	24041	24068	32565	32565					0.07841449197189831
LEVTRTSLK	9	Unmodified	_LEVTRTSLK_					0	0	0		ENST00000334351.7_1_1:24286355-24287447:+|nuORF	ENST00000334351.7_1_1:24286355-24287447:+|nuORF	ENST00000334351.7_1_1:24286355-24287447:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.2640991210938	2	523.813856	1045.61316	-0.24442	-0.00012803	-0.31223	-0.00016355	-0.55665	-0.00029158	523.8136033040311	61.118	1.1115	57.688	57.345	58.456	-3.43					58	22	4	0	0	0	0.027247	1	4139	4139		69.628	18.435	1	420560			29326	10480	24042	24069	32566	32566					0.0921770102308983
LEVVAEAGEV	10	Unmodified	_LEVVAEAGEV_					0	0	0		ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.P6706Tfs*18|1|0.25|ENSG00000154358|chr1:228370088-228370089|-/GA|frameshift_variant;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN	ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN	ENSG00000154358|ENST00000680850|OBSCN	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.2724914550781	2	508.268947	1014.52334	1.5479	0.00078675	-0.24953	-0.00012683	1.2984	0.00065992	508.77038612013655	89.436	0.59301	88.134	87.84	88.433	-1.302					16	11	2	0	0	0	0.026802	1	7849	7849		34.173	1.3601	1	11478			29327	5731;15107	24043	24070	32567	32567					0.01666026623865946
LEVVKLPLT	9	Unmodified	_LEVVKLPLT_					0	0	0		KLHL6|p.A351V|1|0.95|ENSG00000172578|chr3:183499685-183499685|G/A|missense_variant	KLHL6|p.A351V|1|0.95|ENSG00000172578|chr3:183499685-183499685|G/A|missense_variant	KLHL6|p.A351V|1|0.95|ENSG00000172578|chr3:183499685-183499685|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3158874511719	2	506.326068	1010.63758	2.0962	0.0010614	-0.79692	-0.0004035	1.2993	0.00065787	506.3254903555957	112.95	0.36272	112.95	112.74	113.11	0					14	7	3	0	0	0	0.027441	1	12887	12887		49.442	7.0454	1	88643			29328	14526	24044	24071	32568	32568					0.13268961176606808
LEWKTVTEK	9	Unmodified	_LEWKTVTEK_					0	0	0		ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	MULTI-MSMS	OvCa9_classI_Rep3	3	567.31494140625	2	567.313689	1132.61282	2.0704	0.0011746	0.77426	0.00043925	2.8447	0.0016138	567.3139739099872	57.536	1.95	54.41	53.788	55.738	-3.1264					89	52	3	0	0	0	0.65371	1	1726	1726		25.574	0	1	66904			29329	7477	24045	24072	32569	32569					0.051822813032458726
LEWKVSIF	8	Unmodified	_LEWKVSIF_					0	0	0			REV__ENST00000416249.1_1_10:112629578-112631155:+|nuORF	REV__ENST00000416249.1_1_10:112629578-112631155:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	511.2900390625	2	511.289485	1020.56442	0.81265	0.0004155	1.2695	0.00064908	2.0821	0.0010646	511.2899460662673	158.85	0.76733	158.85	158.37	159.14	0					40	15	4	0	0	0	0.65062	1	18641	18641		53.351	9.2347	1	608480	+		29330	25543	24046	24073	32570	32570					0.05495832454005267
LEWPMIAAL	9	Unmodified	_LEWPMIAAL_					0	0	0			REV__ENST00000433805.6_1_12:56661096-56661165:+|nuORF	REV__ENST00000433805.6_1_12:56661096-56661165:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.2702026367188	2	522.283346	1042.55214	2.1157	0.001105	2.7651	0.0014442	4.8808	0.0025492	522.7870273734306	75.584	0.15644	75.584	75.482	75.639	0					5	3	2	0	0	0	0.027441	1	7528	7528		52.299	0	1	282510	+		29331	25753	24047	24074	32571	32571					0.03256472719294834
LEWSIDPLR	9	Unmodified	_LEWSIDPLR_					0	0	0			REV__ENSG00000183067|ENST00000380588|IGSF5	REV__ENSG00000183067|ENST00000380588|IGSF5	MULTI-MSMS	OvCa9_classI_Rep2	2	564.8063354492188	2	564.806031	1127.59751	-0.6708	-0.00037887	1.0893	0.00061522	0.41845	0.00023634	564.8065459691159	99.395	2.9276	98.564	97.919	100.85	-0.83052					122	58	4	0	0	0	0.35444	1	9076	9076		56.721	3.3696	1	405350	+		29332	22339	24048	24075	32572	32572					0.038814145060541705
LEWVAIMHGLG	11	Unmodified	_LEWVAIMHGLG_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.75067138671875	3	409.218115	1224.63251	0.727	0.0002975	1.6867	0.00069022	2.4137	0.00098772	409.2187843557509	33.572	0.39192	33.572	33.384	33.776	0					11	7	2	0	0	0	0.025612	1	1562	1562		36.318	0	1	66992			29333	7829	24049	24076	32573	32573					0.029183340423514892
LEYESGVK	8	Unmodified	_LEYESGVK_					0	0	0			REV__tr|A0A7D6VPX7|A0A7D6VPX7_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18570PE=4SV=1	REV__tr|A0A7D6VPX7|A0A7D6VPX7_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18570PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	462.73724365234375	2	462.737283	923.460012	-0.89301	-0.00041323	0.50231	0.00023244	-0.3907	-0.00018079	462.7373684940092	27.135	0.54877	27.135	26.892	27.44	0					19	10	3	0	0	0	0.50674	1	776	776		76.847	2.8719	1	139980	+		29334	31286	24050	24077	32574	32574					-0.004779140933692361
LEYGNEEDPA	10	Unmodified	_LEYGNEEDPA_					0	0	0		ENST00000525292.5_1_8:125861519-125861561:+|nuORF	ENST00000525292.5_1_8:125861519-125861561:+|nuORF	ENST00000525292.5_1_8:125861519-125861561:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.8099975585938	2	568.740751	1135.46695	1.8199	0.0010351	-3.3816	-0.0019233	-1.5617	-0.00088819	569.2404984880085	125.69	0.13949	125.69	125.62	125.76	0					4	2	2	0	0	0	0.026994	1	14521	14521		40.778	17.255	1	16323			29335	13187	24051	24078	32575	32575					-0.09536646003471105
LEYIALSEI	9	Unmodified	_LEYIALSEI_					0	0	0			REV__tr|A0A553SUB1|A0A553SUB1_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_06630PE=3SV=1	REV__tr|A0A553SUB1|A0A553SUB1_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_06630PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	525.7889404296875	2	525.789515	1049.56448	0.84556	0.00044458	3.2087	0.0016871	4.0542	0.0021317	525.7910764310839	64	1.5926	61.007	60.457	62.05	-2.9933					50	31	2	0	0	0	0.6653	1	2426	2426		24.203	0	1	38100	+		29336	31058	24052	24079	32576	32576					0.04167787663322997
LEYIHNFKLL	10	Unmodified	_LEYIHNFKLL_					0	0	0		MAPRE2|p.H112L|1|0.17|ENSG00000166974|chr18:35097530-35097530|A/T|missense_variant	MAPRE2|p.H112L|1|0.17|ENSG00000166974|chr18:35097530-35097530|A/T|missense_variant	MAPRE2|p.H112L|1|0.17|ENSG00000166974|chr18:35097530-35097530|A/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	645.3637084960938	2	645.366256	1288.71796	0.48506	0.00031304	-4.083	-0.002635	-3.598	-0.002322	645.3634288602703	116.16	1.0105	114.79	114.5	115.51	-1.3645					53	19	4	0	0	0	0.45822	1	10839	10839		60.118	14.146	1	138330			29337	14819	24053	24080	32577	32577					0.08514822499660113
LEYNSLVEV	9	Unmodified	_LEYNSLVEV_					0	0	0		ENST00000491821.1_1_3:66460551-66463338:-|nuORF;nc|ENSG00000144749|Q96JA1-2|LRIG1;ENSG00000144749|ENST00000273261|LRIG1;ENSG00000144749.14,LRIG1,chr3,-,I1.1,66501023,66501092|150|44.06|1|intron	ENST00000491821.1_1_3:66460551-66463338:-|nuORF	ENST00000491821.1_1_3:66460551-66463338:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	532.7833862304688	2	533.276772	1064.53899	-1.3284	-0.0007084	3.4529	0.0018413	2.1245	0.0011329	533.278296609269	73.8	0.99836	71.4	70.844	71.843	-2.3999					39	18	3	0	0	0	0.027432	1	5957	5957		67.494	0	1	52880			29338	5181	24054	24081	32578	32578					0.009303131409069465
LEYPPDNLPS	10	Unmodified	_LEYPPDNLPS_					0	0	0		ENSG00000102794|ENST00000377462|ACOD1	ENSG00000102794|ENST00000377462|ACOD1	ENSG00000102794|ENST00000377462|ACOD1	MULTI-SECPEP	OvCa9_classI_Rep2	2	571.8456420898438	2	572.779679	1143.5448	-1.6996	-0.00097348	0.81582	0.00046728	-0.88376	-0.0005062	572.7799646360479	121.32	0.14825	121.12	121.05	121.2	-0.19718					4	2	2	0	0	0	0.026826	1	11719	11719		36.447	16.45	1	8670.9			29339	2254	24055	24082	32579	32579					-0.021225883474244256
LEYVEKTKG	9	Unmodified	_LEYVEKTKG_					0	0	0			REV__ENST00000510584.1_1_4:57302478-57308067:+|nuORF	REV__ENST00000510584.1_1_4:57302478-57308067:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.7781372070312	2	533.792589	1065.57063	-1.2305	-0.00065682	1.4463	0.00077201	0.21579	0.00011519	533.7929636838015	76.527	1.0956	73.588	73.27	74.366	-2.9389					35	22	2	0	0	0	0.027433	1	6127	6127		19.997	0	1	131100	+		29340	18838	24056	24083	32580	32580					0.04046305894848956
LFAAVHLP	8	Unmodified	_LFAAVHLP_					0	0	0			REV__nc|ENSG00000065413|Q8N8A2-5|ANKRD44	REV__nc|ENSG00000065413|Q8N8A2-5|ANKRD44	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.2388916015625	2	434.257988	866.501424	-0.36086	-0.00015671	3.1537	0.0013695	2.7928	0.0012128	434.2593956945026	54.866	0.51325	51.619	51.439	51.953	-3.2474					11	9	2	0	0	0	0.028476	1	3445	3445		54.895	0	1	15749	+		29341	16792	24057	24084	32581	32581					0.06283311456604679
LFAAYEDGF	9	Unmodified	_LFAAYEDGF_					0	0	0		VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant;nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;VCAN|p.Q2143Kfs*20|1|0.07|ENSG00000038427|chr5:83539428-83539429|-/AAAAAGAAGAA|frameshift_variant;VCAN|p.G2239Afs*2|1|0.05|ENSG00000038427|chr5:83539715-83539715|A/-|frameshift_variant;nc|ENSG00000038427|P13611-3|VCAN;VCAN|p.G775Vfs*21|1|0.12|ENSG00000038427|chr5:83520629-83520630|-/TTGAT|frameshift_variant;nc|ENSG00000038427|P13611-4|VCAN	VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant	VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	516.736328125	2	516.737283	1031.46001	1.8321	0.00094673	-3.7859	-0.0019563	-1.9538	-0.0010096	516.7352700695668	92.799	0.70796	92.799	92.555	93.263	0					43	16	4	0	0	0	0.30002	1	10034	10034		62.978	0.87101	1	2348600			29342	1099	24058	24085	32582	32582					-0.054459140933886374
LFADRIIN	8	Unmodified	_LFADRIIN_					0	0	0			REV__tr|A0A7D6VMM9|A0A7D6VMM9_9CLOTIronABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14240PE=3SV=1	REV__tr|A0A7D6VMM9|A0A7D6VMM9_9CLOTIronABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14240PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.2803955078125	2	481.276909	960.539266	-0.17341	-8.3457E-05	-1.2838	-0.00061789	-1.4573	-0.00070134	481.2762660765146	77.879	0.72801	75.063	74.873	75.601	-2.8165					47	14	4	0	0	0	0.50747	1	6268	6268		76.774	7.1465	1	567650	+		29343	31140	24059	24086	32583	32583					0.057417776514284924
LFAERALGGC	10	Unmodified	_LFAERALGGC_					0	0	0			REV__ENST00000400301.5_2_1:22084220-22109545:-|nuORF	REV__ENST00000400301.5_2_1:22084220-22109545:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.8206176757812	2	518.765852	1035.51715	0.62211	0.00032273	3.675	0.0019065	4.2971	0.0022292	518.7678390574739	150.82	0.25092	150.82	150.64	150.89	0					7	4	2	0	0	0	0.026822	1	17661	17661		30.504	0	1	10332	+		29344	25399	24060	24087	32584	32584					0.0008122991137042845
LFAERKVF	8	Unmodified	_LFAERKVF_					0	0	0			REV__ENSG00000073067|ENST00000308919|CYP2W1	REV__ENSG00000073067|ENST00000308919|CYP2W1	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.2952575683594	2	505.295102	1008.57565	-4.6288	-0.0023389	-2.3887	-0.001207	-7.0175	-0.0035459	505.2935077810475	154.41	0.96838	152.96	152.38	153.35	-1.4517					42	25	3	0	0	0	0.7549	1	15284	15284		24.203	2.2429	1	28272	+		29345	16931	24061	24088	32585	32585					0.07170654548144739
LFAERKVF	8	Unmodified	_LFAERKVF_					0	0	0			REV__ENSG00000073067|ENST00000308919|CYP2W1	REV__ENSG00000073067|ENST00000308919|CYP2W1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	505.295102	1008.57565	-5.8869	-0.0029746	-0.98964	-0.00050006	-6.8766	-0.0034747	505.2944711837203	154.05	1.2581	153.04	152.74	154	-1.0076	0.041398	0.00058653	NaN	24.203	37	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22603	+		29346	16931	24061	24088							0.07170654548144739
LFAFLCRMVI	10	Unmodified	_LFAFLCRMVI_					0	0	0			REV__SRGAP1|p.Y633C|1|0.24|ENSG00000196935|chr12:64109016-64109016|A/G|missense_variant	REV__SRGAP1|p.Y633C|1|0.24|ENSG00000196935|chr12:64109016-64109016|A/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.833984375	2	606.835223	1211.65589	-0.90328	-0.00054814	-3.2984	-0.0020016	-4.2017	-0.0025497	606.8329716464679	88.612	1.9421	86.009	85.73	87.672	-2.6027					90	38	3	0	0	0	0.40664	2	7590	7590;7615		45.952	0	1	2985500	+		29347	29453	24062	24089	32586;32587	32586					0.058530565553382985
LFAGFAIFSI	10	Unmodified	_LFAGFAIFSI_					0	0	0		SLC6A14|p.V359L|1|0.49|ENSG00000268104|chrX:116451586-116451586|G/T|missense_variant	SLC6A14|p.V359L|1|0.49|ENSG00000268104|chrX:116451586-116451586|G/T|missense_variant	SLC6A14|p.V359L|1|0.49|ENSG00000268104|chrX:116451586-116451586|G/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.3035888671875	2	543.305136	1084.59572	-0.57151	-0.00031051	-3.8291	-0.0020804	-4.4006	-0.0023909	543.303345375812	123.29	1.3918	121.93	121.65	123.05	-1.3666					60	27	3	0	0	0	0.49049	1	11656	11656		55.504	0	1	178890			29348	32834	24063	24090	32588	32588					0.05680405488078577
LFAKLTDQL	9	Unmodified	_LFAKLTDQL_					0	0	0			REV__tr|A0A553SRD3|A0A553SRD3_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00835PE=4SV=1	REV__tr|A0A553SRD3|A0A553SRD3_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00835PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	524.8056030273438	2	524.8055	1047.59645	-1.0909	-0.00057252	-1.8521	-0.00097202	-2.9431	-0.0015445	524.8041430606991	117.22	1.2891	117.09	116.96	118.25	-0.12869					58	25	3	0	0	0	0.31747	1	11263	11263		60.972	7.6205	1	262990	+		29349	30723	24064	24091	32589	32589					0.07455200137133033
LFAKPALSF	9	Unmodified	_LFAKPALSF_					0	0	0			REV__ENST00000328933.9_1_22:39780264-39780798:+|nuORF	REV__ENST00000328933.9_1_22:39780264-39780798:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	497.2918395996094	2	497.292028	992.569503	0.88831	0.00044175	-1.1699	-0.00058179	-0.28161	-0.00014004	497.2912758594464	120.22	1.3468	119.19	118.82	120.17	-1.0271					53	26	3	0	0	0	0.31747	2	9146	9146;9162		60.972	8.0352	1	209280	+		29350	24516	24065	24092	32590;32591	32590					0.07292136316607412
LFALALHGVSP	11	Unmodified	_LFALALHGVSP_					0	0	0			REV__SLC7A10|p.V320Pfs*36|1|0.04|ENSG00000130876|chr19:33211280-33211283|AGAC/-|frameshift_variant	REV__SLC7A10|p.V320Pfs*36|1|0.04|ENSG00000130876|chr19:33211280-33211283|AGAC/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.7849731445312	2	562.826766	1123.63898	1.5447	0.0008694	1.0152	0.0005714	2.5599	0.0014408	562.8274962786894	124.46	0.18334	124.46	124.33	124.51	0					5	3	2	0	0	0	0.025534	1	14349	14349		29.15	0	1	31000	+		29351	18979	24066	24093	32592	32592					0.08210595265381926
LFALGRRGR	9	Unmodified	_LFALGRRGR_					0	0	0			REV__ENST00000534961.5_1_8:42751546-42751720:-|nuORF	REV__ENST00000534961.5_1_8:42751546-42751720:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3245239257812	2	523.322517	1044.63048	-0.37111	-0.00019421	2.6852	0.0014052	2.3141	0.001211	523.3237349076933	132.36	1.5282	131.23	130.94	132.47	-1.1249					65	30	3	0	0	0	0.44294	1	10582	10582		47.916	3.5384	1	96476	+		29352	27277	24067	24094	32593	32593					0.1099508613940543
LFALLHPTV	9	Unmodified	_LFALLHPTV_					0	0	0		CON__P04258	CON__P04258	CON__P04258	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.780029296875	2	505.805303	1009.59605	-1.5399	-0.0007789	-3.0897	-0.0015628	-4.6296	-0.0023417	505.80369282942496	101.31	1.2885	100.54	100.17	101.46	-0.76401					40	25	2	0	0	0	0.027433	1	9336	9336		38.806	0	1	213520		+	29353	619	24068	24095	32594	32594					0.0916382520794059
LFALNGLFF	9	Unmodified	_LFALNGLFF_					0	0	0			REV__ENSG00000176294|ENST00000557677|OR4N2	REV__ENSG00000176294|ENST00000557677|OR4N2	MSMS	OvCa9_classI_Rep3	3	521.2907104492188	2	521.292028	1040.5695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.9	1	124.85	124.35	125.35	-1.0519								0	0	0	0.18089	1	9812	9812		33.516	5.2613	1		+		29354	21946	24069	24096	32595	32595					0.05084136316622789
LFALTLTLS	9	Unmodified	_LFALTLTLS_					0	0	0		ENST00000485832.1_1_7:128446807-128447827:+|nuORF	ENST00000485832.1_1_7:128446807-128447827:+|nuORF	ENST00000485832.1_1_7:128446807-128447827:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	489.79949951171875	2	489.797143	977.579734	0.35762	0.00017516	4.1576	0.0020364	4.5152	0.0022115	489.79900077673824	160.64	3.1469	160.64	159.38	162.53	0					149	62	3	0	0	0	0.52083	1	18730	18730		40.573	1.7665	1	288360			29355	12615	24070	24097	32596	32596					0.09004699251181592
LFAMIFAM	8	Unmodified	_LFAMIFAM_					0	0	0		ENSG00000157570|ENST00000520358|TSPAN18	ENSG00000157570|ENST00000520358|TSPAN18	ENSG00000157570|ENST00000520358|TSPAN18	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.2833557128906	2	472.242635	942.470717	2.2524	0.0010637	-1.7467	-0.00082485	0.50578	0.00023885	472.24167860475274	78.343	0.32361	78.343	78.174	78.498	0					10	7	2	0	0	0	0.028476	1	7933	7933		33.493	0.68056	1	177020			29356	5901	24071	24098	32597	32597					-0.002819262442812942
LFAQRQARD	9	Unmodified	_LFAQRQARD_					0	0	0			REV__ADCY8|p.L416Ffs*74|1|0.12|ENSG00000155897|chr8:130943458-130943458|G/-|frameshift_variant	REV__ADCY8|p.L416Ffs*74|1|0.12|ENSG00000155897|chr8:130943458-130943458|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	551.83349609375	2	552.799072	1103.58359	-1.4241	-0.00078723	1.1159	0.00061688	-0.30817	-0.00017036	552.7996379202431	101.24	1.1519	99.632	99.294	100.45	-1.6053					33	21	2	0	0	0	0.02741	1	6937	6937		60.972	0	1	133640	+		29357	15571	24072	24099	32598	32598					0.03594181797620877
LFARRAVVE	9	Unmodified	_LFARRAVVE_					0	0	0			REV__ENSG00000185736|ENST00000381312|ADARB2	REV__ENSG00000185736|ENST00000381312|ADARB2	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2994384765625	2	530.816733	1059.61891	0.8986	0.00047699	1.6336	0.00086715	2.5322	0.0013441	530.8172192307931	114.99	0.376	114.99	114.79	115.16	0					17	7	3	0	0	0	0.027441	1	13113	13113		68.787	2.9837	1	114300	+		29358	22524	24073	24100	32599	32599					0.09148844325432037
LFATGLLITT	10	Unmodified	_LFATGLLITT_					0	0	0		tr|A0A553ST71|A0A553ST71_NIACIOPTfamilyoligopeptidetransporterOS=NialliacirculansOX=1397GN=CEQ21_04365PE=4SV=1	tr|A0A553ST71|A0A553ST71_NIACIOPTfamilyoligopeptidetransporterOS=NialliacirculansOX=1397GN=CEQ21_04365PE=4SV=1	tr|A0A553ST71|A0A553ST71_NIACIOPTfamilyoligopeptidetransporterOS=NialliacirculansOX=1397GN=CEQ21_04365PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.8370361328125	2	525.3157	1048.61685	1.5871	0.0008337	2.9002	0.0015235	4.4872	0.0023572	525.3170794255813	137.11	0.63828	135.56	135.32	135.96	-1.5437					18	12	2	0	0	0	0.027174	1	13321	13321		5.5578	0	1	9206.5			29359	34464	24074	24101	32600	32600					0.09448370796940253
LFATTAFLL	9	Unmodified	_LFATTAFLL_					0	0	0			REV__nc|ENSG00000169181|Q6UXU4-3|GSG1L	REV__nc|ENSG00000169181|Q6UXU4-3|GSG1L	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.7884521484375	2	498.791861	995.569169	-1.7686	-0.00088217	-2.4158	-0.001205	-4.1844	-0.0020871	498.7906154337472	119.3	1.4059	117.96	117.42	118.82	-1.3444					43	26	2	0	0	0	0.44294	1	11212	11212		47.916	1.9434	1	96098	+		29360	21439	24075	24102	32601	32601					0.07120716596762122
LFATTLLFKM	10	Unmodified	_LFATTLLFKM_					0	0	0			REV__ENSG00000109738|ENST00000264428|GLRB	REV__ENSG00000109738|ENST00000264428|GLRB	MULTI-SECPEP	OvCa99_classI_Rep5	1	592.265869140625	2	592.841028	1183.6675	1.7326	0.0010272	-0.20657	-0.00012246	1.5261	0.00090471	592.8407803029927	112.36	0.45029	112.36	112.25	112.7	0					20	9	3	0	0	0	0.026665	1	12791	12791		51.335	0	1	173420	+		29361	17945	24076	24103	32602	32602					0.08301576850294623
LFAVPKTIC	9	Unmodified	_LFAVPKTIC_					0	0	0			REV__UTP20|p.S1763A|1|0.07|ENSG00000120800|chr12:101355011-101355011|T/G|missense_variant	REV__UTP20|p.S1763A|1|0.07|ENSG00000120800|chr12:101355011-101355011|T/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.26763916015625	2	496.285889	990.557224	-0.11636	-5.7747E-05	0.15269	7.5779E-05	0.036334	1.8032E-05	496.2866475330412	56.379	0.3012	53.084	52.92	53.221	-3.2944					6	5	2	0	0	0	0.027279	1	3592	3592		82.305	18.098	1	13889	+		29362	32752	24077	24104	32603	32603					0.0615677658192908
LFAYAKLLL	9	Unmodified	_LFAYAKLLL_					0	0	0			REV__tr|A0A553SGW9|A0A553SGW9_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_11720PE=3SV=1	REV__tr|A0A553SGW9|A0A553SGW9_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_11720PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.7701416015625	2	526.331153	1050.64775	0.76065	0.00040035	2.668	0.0014043	3.4287	0.0018046	526.3323130139945	150.84	1.0115	150.84	150.49	151.5	0					39	19	3	0	0	0	0.027449	1	17642	17642		50.025	0	1	125750	+		29363	29746	24078	24105	32604	32604					0.12445568901853221
LFCFLPLLQ	9	Unmodified	_LFCFLPLLQ_					0	0	0			REV__ENST00000397786.6_1_17:60140586-60140631:-|nuORF	REV__ENST00000397786.6_1_17:60140586-60140631:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.310546875	2	547.309364	1092.60417	-0.08112	-4.4398E-05	1.5118	0.0008274	1.4306	0.000783	547.3100262915397	112.23	1.4754	110.72	110.26	111.74	-1.5111					81	28	4	0	0	0	0.45513	1	10364	10364		46.766	2.2354	1	212230	+		29364	25361	24079	24106	32605	32605					0.06157636133048072
LFCLSPILI	9	Unmodified	_LFCLSPILI_					0	0	0		tr|A0A7D6VU52|A0A7D6VU52_9CLOTDUF2569familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11135PE=4SV=1	tr|A0A7D6VU52|A0A7D6VU52_9CLOTDUF2569familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11135PE=4SV=1	tr|A0A7D6VU52|A0A7D6VU52_9CLOTDUF2569familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11135PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8038635253906	2	509.803914	1017.59328	-0.41042	-0.00020923	0.12912	6.5828E-05	-0.2813	-0.00014341	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.6959	1	13600	13600		19.36	1.0356	1	150140			29365	35165	24080	24107	32606	32606					0.08518233758786664
LFCNYYVL	8	Unmodified	_LFCNYYVL_					0	0	0		ENSG00000176142|ENST00000319172|TMEM39A	ENSG00000176142|ENST00000319172|TMEM39A	ENSG00000176142|ENST00000319172|TMEM39A	MULTI-MSMS	OvCa9_classI_Rep2	2	517.7526245117188	2	517.754421	1033.49429	-0.29917	-0.0001549	-0.78605	-0.00040698	-1.0852	-0.00056188	517.7538652131407	98.693	2.8202	97.8	96.974	99.794	-0.89305					121	56	5	0	0	0	0.59103	1	8975	8975		65.897	5.7792	1	771510			29366	7585	24081	24108	32607	32607					-0.021117892061283783
LFCNYYVL	8	Unmodified	_LFCNYYVL_					0	0	0		ENSG00000176142|ENST00000319172|TMEM39A	ENSG00000176142|ENST00000319172|TMEM39A	ENSG00000176142|ENST00000319172|TMEM39A	MULTI-MSMS	OvCa9_classI_Rep3	3	517.7544555664062	2	517.754421	1033.49429	0.13224	6.8467E-05	-1.0323	-0.00053449	-0.90009	-0.00046603	517.7536919411586	99.533	2.2055	97.848	97.009	99.214	-1.685					97	43	4	0	0	0	0.40641	1	6702	6702		86.935	4.6296	1	863100			29367	7585	24081	24108	32608	32608					-0.021117892061283783
LFCSLDPAPP	10	Unmodified	_LFCSLDPAPP_					0	0	0			REV__ENST00000536066.1_1_12:2967806-2973707:-|nuORF	REV__ENST00000536066.1_1_12:2967806-2973707:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	530.2643432617188	2	530.26261	1058.51067	1.1357	0.00060224	0.30155	0.0001599	1.4373	0.00076214	530.2624393202086	138.96	0.96188	138.96	138.5	139.46	0					42	19	3	0	0	0	0.55145	1	16224	16224		47.916	3.5384	1	220820	+		29368	27292	24082	24109	32609	32609					-0.016247080400489722
LFCVLLPAW	9	Unmodified	_LFCVLLPAW_					0	0	0			REV__ENST00000490180.2_1_14:65197520-65198405:+|nuORF	REV__ENST00000490180.2_1_14:65197520-65198405:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	530.3013305664062	2	531.296256	1060.57796	-1.2946	-0.00068781	0.67794	0.00036019	-0.61664	-0.00032762	531.7978426169682	46.638	1.0412	43.928	43.497	44.538	-2.7097					34	20	3	0	0	0	0.027462	1	2819	2819		49.211	13.593	1	35379	+		29369	26651	24083	24110	32610	32610					0.05009366961576234
LFCVLYLLI	9	Unmodified	_LFCVLYLLI_					0	0	0		ENST00000402714.6_2_14:100610240-100610324:+|nuORF	ENST00000402714.6_2_14:100610240-100610324:+|nuORF	ENST00000402714.6_2_14:100610240-100610324:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	548.8375854492188	2	548.827389	1095.64023	2.3129	0.0012694	3.4439	0.0018901	5.7568	0.0031595	548.8290462995403	94.014	0.63424	94.014	93.799	94.433	0					27	14	3	0	0	0	0.22187	1	10223	10223		72.62	0	1	758330			29370	11435	24084	24111	32611	32611					0.09623093309892283
LFDAGKQKVQ	10	Unmodified	_LFDAGKQKVQ_					0	0	0			REV__nc|ENSG00000067225|P14618-3|PKM	REV__nc|ENSG00000067225|P14618-3|PKM	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3204345703125	2	567.319306	1132.62406	-1.2368	-0.00070167	1.2078	0.00068523	-0.028977	-1.6439E-05	567.3201786014721	85.424	2.0958	83.204	82.744	84.84	-2.2204					134	41	5	0	0	0	0.22663	1	5009	5009		90.37	2.6155	1	1900400	+		29371	16832	24085	24112	32612	32612					0.06305103397380662
LFDDPLNG	8	Unmodified	_LFDDPLNG_					0	0	0			REV__nc|ENSG00000180891|Q9NWM3-2|CUEDC1	REV__nc|ENSG00000180891|Q9NWM3-2|CUEDC1	MULTI-MSMS	OvCa99_classI_Rep5	1	445.7174987792969	2	445.71635	889.418148	1.7666	0.00078742	0.64421	0.00028714	2.4109	0.0010746	445.71647553915506	132.54	0.98787	132.54	132.27	133.26	0					33	20	3	0	0	0	0.62934	1	15419	15419		57.811	7.7867	1	141520	+		29372	22203	24086	24113	32613	32613					-0.030984697818894347
LFDEILLSLK	10	Unmodified	_LFDEILLSLK_					0	0	0		ENSG00000185261|ENST00000682413|KIAA0825;nc|ENSG00000185261|Q8IV33|KIAA0825;nc|ENSG00000185261|Q8IV33-3|KIAA0825	ENSG00000185261|ENST00000682413|KIAA0825	ENSG00000185261|ENST00000682413|KIAA0825	MULTI-MSMS	OvCa9_classI_Rep3	3	595.8534545898438	2	595.855189	1189.69583	0.065118	3.8801E-05	-2.7305	-0.001627	-2.6654	-0.0015882	595.8535881527235	87.861	1.3559	85.684	85.396	86.752	-2.1768					74	26	4	0	0	0	0.59703	1	5311	5311		42.396	5.9494	1	684060			29373	8239	24087	24114	32614	32614					0.10856598031227804
LFDEILQNL	9	Unmodified	_LFDEILQNL_					0	0	0			REV__nc|ENSG00000173093|Q8NA47-2|CCDC63	REV__nc|ENSG00000173093|Q8NA47-2|CCDC63	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.7918701171875	2	552.800414	1103.58628	1.7246	0.00095334	4.1567	0.0022978	5.8813	0.0032512	552.8033751445985	113.77	0.26634	113.77	113.61	113.88	0					7	5	2	0	0	0	0.027418	1	12982	12982		71.877	10.906	1	49977	+		29374	21747	24088	24115	32615	32615					0.03862592411906007
LFDEQLLVC	9	Carbamidomethyl (C)	_LFDEQLLVC(Carbamidomethyl (C))_	LFDEQLLVC(1)		LFDEQLLVC(79)		0	1	0			REV__ENSG00000116685|ENST00000376572|KIAA2013	REV__ENSG00000116685|ENST00000376572|KIAA2013	MULTI-MSMS	OvCa99_classI_Rep5	1	568.788818359375	2	568.78645	1135.55835	1.0173	0.00057861	-1.6572	-0.00094258	-0.6399	-0.00036397	568.7855805944112	153.79	1.2744	153.79	153.3	154.57	0					54	25	3	0	0	0	0.18193	1	18007	18007		79.451	10.664	1	305640	+		29375	18311	24089	24116	32616	32616	200				-0.004010538398460994
LFDETGRQL	9	Unmodified	_LFDETGRQL_					0	0	0		tr|A0A7D6VPP6|A0A7D6VPP6_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12355PE=4SV=1	tr|A0A7D6VPP6|A0A7D6VPP6_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12355PE=4SV=1	tr|A0A7D6VPP6|A0A7D6VPP6_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12355PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	539.7823486328125	2	539.780013	1077.54547	2.3921	0.0012912	3.6	0.0019432	5.9922	0.0032345	539.7817363727304	97.136	0.81626	97.136	96.838	97.654	0					54	18	5	0	0	0	0.1804	1	10648	10648		79.713	2.9384	1	2859700			29376	34786	24090	24117	32617	32617					0.009802510923009322
LFDGKKVQLN	10	Unmodified	_LFDGKKVQLN_					0	0	0			REV__tr|A0A7D7A0T7|A0A7D7A0T7_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11405PE=3SV=1	REV__tr|A0A7D7A0T7|A0A7D7A0T7_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11405PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.8634033203125	2	581.334956	1160.65536	0.18878	0.00010975	1.1892	0.00069131	1.378	0.00080106	581.837445173756	74.327	0.34033	74.327	74.176	74.517	0					14	8	2	0	0	0	0.026803	1	7320	7320		32.751	8.2313	1	399820	+		29377	32458	24091	24118	32618	32618					0.08145676431468019
LFDIFGNAGIA	11	Unmodified	_LFDIFGNAGIA_					0	0	0			REV__tr|A0A553SM48|A0A553SM48_NIACIPTSglucosetransportersubunitIIBCOS=NialliacirculansOX=1397GN=CEQ21_21875PE=4SV=1	REV__tr|A0A553SM48|A0A553SM48_NIACIPTSglucosetransportersubunitIIBCOS=NialliacirculansOX=1397GN=CEQ21_21875PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2759399414062	2	569.300581	1136.58661	-0.063387	-3.6086E-05	3.0057	0.0017112	2.9424	0.0016751	569.3014074851023	56.604	0.16397	56.604	56.538	56.702	0					5	3	2	0	0	0	0.025265	1	4708	4708		51.193	26.674	1	281690	+		29378	30294	24092	24119	32619	32619					0.023780121317713565
LFDIVANCLL	10	Unmodified	_LFDIVANCLL_					0	0	0		nc|ENSG00000188175|A8MVW5-3|HEPACAM2	nc|ENSG00000188175|A8MVW5-3|HEPACAM2	nc|ENSG00000188175|A8MVW5-3|HEPACAM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.3156127929688	2	560.807185	1119.59982	2.1774	0.0012211	-0.75805	-0.00042512	1.4194	0.000796	561.306177441274	148.82	0.54356	148.82	148.37	148.92	0					16	10	2	0	0	0	0.026635	1	17366	17366		66.429	7.6473	1	41850			29379	15230	24093	24120	32620	32620					0.04480126919474969
LFDLDLRYGY	10	Unmodified	_LFDLDLRYGY_					0	0	0			REV__nc|ENSG00000197256|Q63ZY3-3|KANK2	REV__nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	637.2890014648438	2	637.824421	1273.63429	1.3089	0.00083482	1.9641	0.0012527	3.2729	0.0020876	637.825432412618	154.32	0.65294	154.32	154.12	154.78	0					18	12	2	0	0	0	0.026782	1	18083	18083		54.776	15.97	1	51745	+		29380	22905	24094	24121	32621	32621					0.008416663319621875
LFDLYNIAN	9	Unmodified	_LFDLYNIAN_					0	0	0			REV__nc|ENSG00000186976|Q5THR3-5|EFCAB6	REV__nc|ENSG00000186976|Q5THR3-5|EFCAB6	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.7811889648438	2	541.779482	1081.54441	-0.71581	-0.00038781	2.6289	0.0014243	1.9131	0.0010365	541.7807844752974	116.51	0.92921	115.15	114.89	115.82	-1.3645					44	17	3	0	0	0	0.50149	1	10889	10889		42.396	1.618	1	81468	+		29381	22624	24095	24122	32622	32622					0.0069003672338112665
LFDQSHSVLV	10	Unmodified	_LFDQSHSVLV_					0	0	0			REV__nc|ENSG00000285292|Q9UG63-2|ABCF2	REV__nc|ENSG00000285292|Q9UG63-2|ABCF2	MULTI-SECPEP	OvCa9_classI_Rep2	2	572.3170776367188	2	572.803488	1143.59242	-0.52278	-0.00029945	1.4077	0.00080634	0.88493	0.00050689	573.3058912793858	81.265	0.35224	79.616	79.415	79.767	-1.6485					10	6	2	0	0	0	0.026734	1	6880	6880		56.721	10.749	1	11343	+		29382	16592	24096	24123	32623	32623					0.02637110643422602
LFDRLIATNGP	11	Unmodified	_LFDRLIATNGP_					0	0	0			REV__tr|A0A7D6VPU1|A0A7D6VPU1_9CLOTDJ-1/PfpIfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17735PE=3SV=1	REV__tr|A0A7D6VPU1|A0A7D6VPU1_9CLOTDJ-1/PfpIfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17735PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	608.8388671875	2	608.837862	1215.66117	1.2125	0.00073819	-1.4252	-0.00086774	-0.21279	-0.00012956	608.8368613491077	156.48	2.1073	156.48	156.04	158.15	0					128	41	5	0	0	0	0.61983	1	18397	18397		42.864	7.7122	1	3302900	+		29383	31277	24097	24124	32624	32624					0.061967749431460106
LFDSLRVEG	9	Unmodified	_LFDSLRVEG_					0	0	0			REV__nc|ENSG00000117682|Q86SQ9-3|DHDDS	REV__nc|ENSG00000117682|Q86SQ9-3|DHDDS	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.3255004882812	2	518.277106	1034.53966	-0.56279	-0.00029168	4.4501	0.0023064	3.8873	0.0020147	518.2793511986852	83.401	1.4398	81.14	80.917	82.357	-2.261					45	30	2	0	0	0	0.027433	1	4841	4841		60.972	18.108	1	435420	+		29384	18364	24098	24125	32625	32625					0.023771525806296268
LFDTSFALN	9	Unmodified	_LFDTSFALN_					0	0	0		tr|A0A553SRZ6|A0A553SRZ6_NIACILysRsubstrate-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02175PE=4SV=1	tr|A0A553SRZ6|A0A553SRZ6_NIACILysRsubstrate-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02175PE=4SV=1	tr|A0A553SRZ6|A0A553SRZ6_NIACILysRsubstrate-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02175PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.303466796875	2	514.258382	1026.50221	0.63759	0.00032788	-4.4779	-0.0023028	-3.8403	-0.0019749	514.2547390266388	103.97	0.52348	102.54	102.18	102.71	-1.4347					10	9	2	0	0	0	0.027462	1	7188	7188		16.473	0	1	13928			29385	34315	24099	24126	32626	32626					-0.009979386849863658
LFDVLLCFN	9	Unmodified	_LFDVLLCFN_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.761474609375	2	542.280803	1082.54705	1.2307	0.00066736	-0.70264	-0.00038103	0.52802	0.00028633	542.2803369427921	138.68	1.2531	138.68	138.4	139.66	0					42	25	2	0	0	0	0.027426	1	16212	16212		73.975	8.1716	1	253990	+		29386	17095	24100	24127	32627	32627					0.009081688566993762
LFEAAECFLL	10	Unmodified	_LFEAAECFLL_					0	0	0		nc|ENSG00000241356|P0C626|OR5G3	nc|ENSG00000241356|P0C626|OR5G3	nc|ENSG00000241356|P0C626|OR5G3	MULTI-MSMS	OvCa9_classI_Rep2	2	578.2886352539062	2	578.291368	1154.56818	-5.4888	-0.0031741	2.5815	0.0014929	-2.9073	-0.0016812	578.2927598597663	159.22	4.1126	158.99	158.53	162.64	-0.22697					262	82	5	0	0	0	0.62668	1	16285	16285		38.806	1.647	1	1073400			29387	15336	24101	24128	32628	32628					-0.0029186583444698044
LFEDPPPTR	9	Unmodified	_LFEDPPPTR_					0	0	0		ENSG00000204538|ENST00000259845|PSORS1C2	ENSG00000204538|ENST00000259845|PSORS1C2	ENSG00000204538|ENST00000259845|PSORS1C2	MULTI-MSMS	OvCa99_classI_Rep5	1	536.2797241210938	2	536.277106	1070.53966	0.09117	4.8893E-05	0.44524	0.00023877	0.53641	0.00028766	536.2772597240544	73.658	0.31313	73.658	73.479	73.792	0					23	7	4	0	0	0	0.1804	1	7243	7243		79.713	5.4575	1	1760600			29388	8999	24102	24129	32629	32629					0.007211525806042118
LFEKDTVIS	9	Unmodified	_LFEKDTVIS_					0	0	0		tr|A0A7D7A2H6|A0A7D7A2H6_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16950PE=4SV=1	tr|A0A7D7A2H6|A0A7D7A2H6_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16950PE=4SV=1	tr|A0A7D7A2H6|A0A7D7A2H6_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16950PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	526.2871704101562	2	526.28714	1050.55973	-0.33284	-0.00017517	-0.09802	-5.1587E-05	-0.43086	-0.00022676	526.2870134951581	103.77	1.1496	102.33	102.03	103.18	-1.4347					67	21	4	0	0	0	0.083631	1	7196	7196		101.6	0.34809	1	567320			29389	36078	24103	24130	32630	32630					0.03646903520575506
LFELFEGKL	9	Unmodified	_LFELFEGKL_					0	0	0		tr|A0A553SP05|A0A553SP05_NIACIATP-dependentproteasesubunitHslVOS=NialliacirculansOX=1397GN=hslVPE=3SV=1	tr|A0A553SP05|A0A553SP05_NIACIATP-dependentproteasesubunitHslVOS=NialliacirculansOX=1397GN=hslVPE=3SV=1	tr|A0A553SP05|A0A553SP05_NIACIATP-dependentproteasesubunitHslVOS=NialliacirculansOX=1397GN=hslVPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.354736328125	2	548.307875	1094.6012	-0.4513	-0.00024745	-3.1315	-0.001717	-3.5828	-0.0019645	548.3061203563656	98.841	0.25784	96.516	96.382	96.639	-2.3253					6	4	2	0	0	0	0.027441	1	8787	8787		49.442	14.241	1	5851.6			29390	33988	24104	24131	32631	32631					0.05768084279907271
LFELLTRIA	9	Unmodified	_LFELLTRIA_					0	0	0			REV__ENST00000543940.1_1_12:124114818-124118191:-|nuORF	REV__ENST00000543940.1_1_12:124114818-124118191:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	538.3260498046875	2	538.329142	1074.64373	-5.6218	-0.0030264	1.9414	0.0010451	-3.6804	-0.0019813	538.3300395836094	158.87	1.4268	157.61	157.3	158.73	-1.267					79	27	5	0	0	0	0.70177	1	13770	13770		17.365	0	1	528870	+		29391	18031	24105	24132	32632	32632					0.10939479408125408
LFERLPSLP	9	Unmodified	_LFERLPSLP_					0	0	0		nc|ENSG00000143537|Q13444-2|ADAM15;nc|ENSG00000143537|Q13444-12|ADAM15;nc|ENSG00000143537|Q13444-5|ADAM15;nc|ENSG00000143537|Q13444-4|ADAM15;ENST00000527418.5_1_1:155025082-155034975:+|nuORF;nc|ENSG00000143537|Q13444-3|ADAM15;ENSG00000143537|ENST00000356955|ADAM15;nc|ENSG00000143537|Q13444-11|ADAM15;nc|ENSG00000143537|Q13444-13|ADAM15;nc|ENSG00000143537|Q13444-10|ADAM15;nc|ENSG00000143537|Q13444-9|ADAM15;nc|ENSG00000143537|Q13444-8|ADAM15;nc|ENSG00000143537|Q13444-7|ADAM15;nc|ENSG00000143537|Q13444-6|ADAM15;ENST00000461564.6_1_1:155023817-155033989:+|nuORF	nc|ENSG00000143537|Q13444-2|ADAM15	nc|ENSG00000143537|Q13444-2|ADAM15	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.28125	2	536.313492	1070.61243	1.069	0.0005733	1.0294	0.0005521	2.0984	0.0011254	536.3139151242809	142.86	0.7813	142.86	142.39	143.17	0					22	15	2	0	0	0	0.027462	1	16697	16697		31.53	3.6476	1	66348			29392	5068	24106	24133	32633	32633					0.07994906374028687
LFFFCRVVL	9	Unmodified	_LFFFCRVVL_					0	0	0		FLAM_A_dup4680|chr5:139541632-139541755:+|1.4043587065395555|0.0103914084848845|7.08|409.0|6|1|anti-sense	FLAM_A_dup4680|chr5:139541632-139541755:+|1.4043587065395555|0.0103914084848845|7.08|409.0|6|1|anti-sense	FLAM_A_dup4680|chr5:139541632-139541755:+|1.4043587065395555|0.0103914084848845|7.08|409.0|6|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	571.8067016601562	2	572.322805	1142.63106	0.89596	0.00051278	-2.9864	-0.0017092	-2.0905	-0.0011964	572.3207705353346	89.485	0.84193	88.183	87.938	88.78	-1.302					38	16	4	0	0	0	0.027462	1	7858	7858		42.474	0	1	32159			29393	14331	24107	24134	32634	32634					0.065447447442466
LFFFFENSE	9	Unmodified	_LFFFFENSE_					0	0	0		ENST00000263734.4_1_2:46524642-46524732:+|nuORF	ENST00000263734.4_1_2:46524642-46524732:+|nuORF	ENST00000263734.4_1_2:46524642-46524732:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	590.2681884765625	2	590.27149	1178.52843	-5.3391	-0.0031515	0.61745	0.00036446	-4.7217	-0.0027871	590.2717322598501	159.2	1.2398	158.97	158.63	159.87	-0.22697					77	24	4	0	0	0	0.58665	1	16158	16158		33.516	1.5607	1	170140			29394	9916	24108	24135	32635	32635					-0.05369669513538611
LFFFLLKI	8	Unmodified	_LFFFLLKI_					0	0	0		ENST00000314393.5_1_8:123793760-123875761:+|nuORF	ENST00000314393.5_1_8:123793760-123875761:+|nuORF	ENST00000314393.5_1_8:123793760-123875761:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.3011474609375	2	520.830789	1039.64703	-0.85997	-0.0004479	3.5999	0.0018749	2.7399	0.001427	520.8327635378968	82.548	0.64075	80.252	79.988	80.629	-2.2963					33	12	3	0	0	0	0.028476	1	4640	4640		39.021	1.993	1	33892			29395	10321	24109	24136	32636	32636					0.12878774252794756
LFFGPSRAC	9	Unmodified	_LFFGPSRAC_					0	0	0			REV__ENST00000585488.1_1_12:133768044-133768326:+|nuORF	REV__ENST00000585488.1_1_12:133768044-133768326:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	499.2499084472656	2	499.249837	996.485122	0.95386	0.00047622	-2.7785	-0.0013872	-1.8247	-0.00091097	499.24831202573387	155.81	2.9765	155.81	154.72	157.7	0					141	58	3	0	0	0	0.42676	1	18238	18238		49.442	2.6751	1	309150	+		29396	27858	24110	24137	32637	32637					-0.013261377718094991
LFFHLIQF	8	Unmodified	_LFFHLIQF_					0	0	0			REV__ENST00000448443.6_1_5:143549864-143550125:-|nuORF	REV__ENST00000448443.6_1_5:143549864-143550125:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	532.796875	2	532.80002	1063.58549	-1.4512	-0.00077319	-2.4542	-0.0013076	-3.9054	-0.0020808	532.7984173853858	115.26	1.5315	115.14	114.5	116.03	-0.11777					69	30	4	0	0	0	0.63104	1	10997	10997		57.453	8.0111	1	214400	+		29397	25933	24111	24138	32638	32638					0.05623842553518443
LFFHLIQF	8	Unmodified	_LFFHLIQF_					0	0	0			REV__ENST00000448443.6_1_5:143549864-143550125:-|nuORF	REV__ENST00000448443.6_1_5:143549864-143550125:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	532.7962036132812	2	532.80002	1063.58549	-0.1562	-8.3225E-05	-3.6799	-0.0019607	-3.8361	-0.0020439	532.7977812611238	116.26	1.3343	115.22	114.85	116.18	-1.0414					60	26	3	0	0	0	0.63104	1	8689	8689		57.453	4.1012	1	254790	+		29398	25933	24111	24138	32639	32639					0.05623842553518443
LFFLLIAFPI	10	Unmodified	_LFFLLIAFPI_					0	0	0			REV__nc|ENSG00000242019|Q8N743|KIR3DL3	REV__nc|ENSG00000242019|Q8N743|KIR3DL3	MULTI-SECPEP	OvCa9_classI_Rep3	3	597.2618408203125	2	597.370278	1192.726	-5.7056	-0.0034084	-4.3874	-0.0026209	-10.093	-0.0060293	597.3677602771259	159.77	0.55144	158.44	158.21	158.76	-1.3316					15	10	2	0	0	0	0.027007	1	13837	13837		35.201	7.3185	1	22768	+		29399	23453	24112	24139	32640	32640					0.13735001487088994
LFFMYLKL	8	Unmodified	_LFFMYLKL_					0	0	0			REV__ENST00000408889.7_2_8:110692974-110693019:-|nuORF	REV__ENST00000408889.7_2_8:110692974-110693019:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.3035888671875	2	537.806457	1073.59836	-0.63499	-0.0003415	-1.086	-0.00058403	-1.7209	-0.00092553	537.8056765276353	90.392	1.7789	87.817	87.05	88.829	-2.575					40	23	4	0	0	0	0.028476	1	7856	7856		49.211	2.4444	1	218110	+		29400	25460	24113	24140	32641	32641					0.0645053762139014
LFFNTQLSW	9	Unmodified	_LFFNTQLSW_					0	0	0		tr|A0A7D7A5E0|A0A7D7A5E0_9CLOTPTSsystemmannose/fructose/sorbosefamilytransportersubunitIIDOS=ClostridiumintestinaleOX=36845GN=HZF06_06870PE=4SV=1	tr|A0A7D7A5E0|A0A7D7A5E0_9CLOTPTSsystemmannose/fructose/sorbosefamilytransportersubunitIIDOS=ClostridiumintestinaleOX=36845GN=HZF06_06870PE=4SV=1	tr|A0A7D7A5E0|A0A7D7A5E0_9CLOTPTSsystemmannose/fructose/sorbosefamilytransportersubunitIIDOS=ClostridiumintestinaleOX=36845GN=HZF06_06870PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2894897460938	2	578.295299	1154.57605	-7.6021	-0.0043963	-2.1936	-0.0012685	-9.7957	-0.0056648	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.65371	1	13602	13602		25.574	3.8883	1	1429200			29401	36167	24114	24141	32642	32642					0.004940294773405185
LFFPFFFL	8	Unmodified	_LFFPFFFL_					0	0	0			REV__L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|113|1|anti-sense	REV__L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|113|1|anti-sense	MSMS	OvCa99_classI_Rep5	1	539.2952880859375	2	539.29404	1076.57353	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.27	1	110.27	109.77	110.77	0								0	0	0	0.30129	1	12510	12510		54.895	0	1		+		29402	28352	24115	24142	32643	32643					0.03830225810315824
LFFPLYYV	8	Unmodified	_LFFPLYYV_					0	0	0		nc|ENSG00000183780|Q8IY50|SLC35F3;ENSG00000183780|ENST00000366618|SLC35F3	nc|ENSG00000183780|Q8IY50|SLC35F3	nc|ENSG00000183780|Q8IY50|SLC35F3	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.3413696289062	2	531.288954	1060.56336	0.75855	0.00040301	-2.5203	-0.001339	-1.7618	-0.000936	531.287490482786	140.42	0.51538	140.42	140.12	140.63	0					20	10	2	0	0	0	0.028476	1	16386	16386		33.493	9.2902	1	82833			29403	8107	24116	24143	32644	32644					0.035496180850714154
LFFQALLTL	9	Unmodified	_LFFQALLTL_					0	0	0			REV__ENSG00000165650|ENST00000334464|PDZD8	REV__ENSG00000165650|ENST00000334464|PDZD8	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.31884765625	2	533.320786	1064.62702	-2.1919	-0.001169	-2.6524	-0.0014146	-4.8444	-0.0025836	533.319370359341	72.331	1.5068	68.934	68.519	70.026	-3.3974					103	30	6	0	0	0	0.12365	1	5552	5552		90.777	0	1	1205200	+		29404	21104	24117	24144	32645	32645					0.09728978522161924
LFFQALLTL	9	Unmodified	_LFFQALLTL_					0	0	0			REV__ENSG00000165650|ENST00000334464|PDZD8	REV__ENSG00000165650|ENST00000334464|PDZD8	MULTI-MATCH	OvCa9_classI_Rep2	2		2	533.320786	1064.62702	-0.41119	-0.0002193	-3.3529	-0.0017882	-3.7641	-0.0020074	533.3187528142114	71.346	1.257	68.839	68.385	69.642	-2.5072	-0.04739	-0.0004554	NaN	90.777	57	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260970	+		29405	21104	24117	24144							0.09728978522161924
LFFVVMIIL	9	Unmodified	_LFFVVMIIL_					0	0	0			REV__tr|A0A553SMW3|A0A553SMW3_NIACIGlycerol-3-phosphateacyltransferaseOS=NialliacirculansOX=1397GN=plsYPE=3SV=1	REV__tr|A0A553SMW3|A0A553SMW3_NIACIGlycerol-3-phosphateacyltransferaseOS=NialliacirculansOX=1397GN=plsYPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.8323364257812	2	547.837757	1093.66096	-2.5801	-0.0014135	-4.2712	-0.0023399	-6.8513	-0.0037534	547.8352648702737	149.06	0.94791	147.62	147.33	148.27	-1.4344					31	19	2	0	0	0	0.61768	1	14700	14700		29.842	7.2619	1	25021	+		29406	30374	24118	24145	32646	32646					0.11787683689590267
LFFVVMIIL	9	Unmodified	_LFFVVMIIL_					0	0	0			REV__tr|A0A553SMW3|A0A553SMW3_NIACIGlycerol-3-phosphateacyltransferaseOS=NialliacirculansOX=1397GN=plsYPE=3SV=1	REV__tr|A0A553SMW3|A0A553SMW3_NIACIGlycerol-3-phosphateacyltransferaseOS=NialliacirculansOX=1397GN=plsYPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	547.837757	1093.66096	-4.5548	-0.0024953	-2.2342	-0.001224	-6.789	-0.0037193	547.8362476852661	148.57	0.90161	147.62	147.3	148.2	-0.9512	-0.0018211	0.00070071	NaN	29.842	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21899	+		29407	30374	24118	24145							0.11787683689590267
LFFVVMIIL	9	Unmodified	_LFFVVMIIL_					0	0	0			REV__tr|A0A553SMW3|A0A553SMW3_NIACIGlycerol-3-phosphateacyltransferaseOS=NialliacirculansOX=1397GN=plsYPE=3SV=1	REV__tr|A0A553SMW3|A0A553SMW3_NIACIGlycerol-3-phosphateacyltransferaseOS=NialliacirculansOX=1397GN=plsYPE=3SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	547.837757	1093.66096	-2.5801	-0.0014135	-4.2712	-0.0023399	-6.8513	-0.0037534	547.8352648702737	149.06	0.94791	147.62	147.33	148.27	-1.4344	0.0018211	-0.0015312	NaN	29.842	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25021	+		29408	30374	24118	24145							0.11787683689590267
LFFYMPSNL	9	Unmodified	_LFFYMPSNL_					0	0	0			REV__ENSG00000172640|ENST00000310248|OR10AD1	REV__ENSG00000172640|ENST00000310248|OR10AD1	MULTI-SECPEP	OvCa9_classI_Rep2	2	565.8089599609375	2	566.280803	1130.54705	1.6343	0.00092548	0.38999	0.00022084	2.0243	0.0011463	566.2808878119474	90.379	2.3662	89.076	87.84	90.206	-1.302					84	46	3	0	0	0	0.02741	1	7927	7927		71.296	5.8303	1	183660	+		29409	21716	24119	24146	32647	32647					-0.012998311433193521
LFFYMPSNL	9	Unmodified	_LFFYMPSNL_					0	0	0			REV__ENSG00000172640|ENST00000310248|OR10AD1	REV__ENSG00000172640|ENST00000310248|OR10AD1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	566.280803	1130.54705	-0.94095	-0.00053284	2.868	0.0016241	1.927	0.0010912	566.2823272146751	90.995	1.7261	88.933	88.177	89.903	-2.0618	-0.019358	0.001259	NaN	71.296	85	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	383040	+		29410	21716	24119	24146							-0.012998311433193521
LFGESDLLQ	9	Unmodified	_LFGESDLLQ_					0	0	0			REV__TBC1D9B|p.G1112Vfs*34|1|0.27|ENSG00000197226|chr5:179863866-179863867|-/A|frameshift_variant	REV__TBC1D9B|p.G1112Vfs*34|1|0.27|ENSG00000197226|chr5:179863866-179863867|-/A|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	511.2708740234375	2	511.263665	1020.51278	1.099	0.00056186	0.86312	0.00044128	1.9621	0.0010031	511.2639515577642	132.53	2.1106	132.53	132.13	134.24	0					106	44	5	0	0	0	0.55588	1	15539	15539		37.159	2.9866	1	2175700	+		29411	22903	24120	24147	32648	32648					0.003340439694284214
LFGFLGIAGAL	11	Unmodified	_LFGFLGIAGAL_					0	0	0		tr|A0A7D6VYV8|A0A7D6VYV8_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17960PE=4SV=1	tr|A0A7D6VYV8|A0A7D6VYV8_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17960PE=4SV=1	tr|A0A7D6VYV8|A0A7D6VYV8_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17960PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.2899169921875	2	539.81841	1077.62227	1.2159	0.00065635	-3.1976	-0.0017261	-1.9817	-0.0010698	539.8160006237816	83.622	0.42224	83.622	83.249	83.671	0					12	9	2	0	0	0	0.025604	1	8710	8710		71.378	11.26	1	103420			29412	35340	24121	24148	32649	32649					0.08656094379398382
LFGGFWLLL	9	Unmodified	_LFGGFWLLL_					0	0	0			REV__L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|124|1|anti-sense	REV__L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|124|1|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	533.3151245117188	2	533.310221	1064.60589	1.3686	0.00072987	4.0231	0.0021456	5.3917	0.0028754	533.3122789714088	149.57	0.6842	149.57	149.26	149.94	0					27	13	3	0	0	0	0.53728	1	17502	17502		39.021	1.993	1	116670	+		29413	28353	24122	24149	32650	32650					0.07617013213325663
LFGGRSYMPST	11	Unmodified	_LFGGRSYMPST_					0	0	0		ENSG00000175097|ENST00000311485|RAG2	ENSG00000175097|ENST00000311485|RAG2	ENSG00000175097|ENST00000311485|RAG2	MULTI-MSMS	OvCa9_classI_Rep3	3	405.8665771484375	3	405.865741	1214.57539	3.0032	0.0012189	0.026723	1.0846E-05	3.0299	0.0012297	405.8656502294352	58.999	2.532	55.873	55.114	57.646	-3.1264					157	70	3	0	0	0	0.71191	1	1906	1906		17.167	0	1	158560			29414	7514	24123	24150	32651	32651					-0.023311332340199442
LFGHENRV	8	Unmodified	_LFGHENRV_					0	0	0		nc|ENSG00000069966|O14775-3|GNB5;nc|ENSG00000069966|O14775-2|GNB5;ENSG00000069966|ENST00000261837|GNB5	nc|ENSG00000069966|O14775-3|GNB5	nc|ENSG00000069966|O14775-3|GNB5	MSMS	OvCa99_classI_Rep5	1	486.2578430175781	2	486.256508	970.498464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.078	1	61.078	60.578	61.578	0								0	0	0	0.30129	1	5365	5365		82.305	19.327	1				29415	1412	24124	24151	32652	32652					0.012034363317980024
LFGIFKSPKPE	11	Unmodified	_LFGIFKSPKPE_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-MSMS	OvCa9_classI_Rep3	3	631.8612670898438	2	631.860806	1261.70706	-0.68389	-0.00043213	-3.0035	-0.0018978	-3.6874	-0.0023299	631.8588267273911	91.801	1.7365	89.777	89.231	90.967	-2.0241					92	35	6	0	0	0	0.25759	1	5773	5773		72.243	24.284	1	651520			29416	8857	24125	24152	32653	32653					0.08667420125357239
LFGIFKSPKPE	11	Unmodified	_LFGIFKSPKPE_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	631.860806	1261.70706	0.65081	0.00041122	-4.0082	-0.0025326	-3.3574	-0.0021214	631.858240548391	90.768	1.9213	89.466	89.126	91.048	-1.302	-0.18765	-0.00091888	NaN	72.243	95	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	474460			29417	8857	24125	24152							0.08667420125357239
LFGIFKSPKPE	11	Unmodified	_LFGIFKSPKPE_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	631.860806	1261.70706	-0.63172	-0.00039916	-2.5742	-0.0016265	-3.2059	-0.0020257	631.8590999579563	92.26	1.5141	89.718	89.364	90.878	-2.5425	0.064498	0.00089335	NaN	72.243	86	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	480920			29418	8857	24125	24152							0.08667420125357239
LFGKALLVSS	10	Unmodified	_LFGKALLVSS_					0	0	0			REV__ENST00000434558.5_1_1:156708347-156710981:-|nuORF	REV__ENST00000434558.5_1_1:156708347-156710981:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.27783203125	2	517.815867	1033.61718	2.5372	0.0013138	0.043016	2.2275E-05	2.5802	0.0013361	517.8156543899097	99.039	0.48361	99.039	98.877	99.361	0					26	11	3	0	0	0	0.026551	1	10934	10934		69.628	6.6492	1	884470	+		29419	24853	24126	24153	32654	32654					0.10171790516801593
LFGLKQRSI	9	Unmodified	_LFGLKQRSI_					0	0	0		nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799|CPLANE1	nc|ENSG00000197603|Q9H799|CPLANE1	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.3248901367188	2	531.326934	1060.63931	-4.6346	-0.0024625	0.52784	0.00028046	-4.1068	-0.0021821	531.3270951252447	152.87	1.0005	151.43	151.13	152.13	-1.435					54	23	3	0	0	0	0.51865	1	15125	15125		40.778	3.6191	1	151040			29420	8727	24127	24154	32655	32655					0.1114201498521652
LFGLKQRSI	9	Unmodified	_LFGLKQRSI_					0	0	0		nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799|CPLANE1	nc|ENSG00000197603|Q9H799|CPLANE1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	531.326934	1060.63931	-4.8024	-0.0025517	0.53017	0.00028169	-4.2722	-0.00227	531.3271270000606	152.37	0.88223	151.39	151.19	152.08	-0.97299	-0.021264	1.5792E-06	NaN	40.778	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53456			29421	8727	24127	24154							0.1114201498521652
LFGLPFLGAL	10	Unmodified	_LFGLPFLGAL_					0	0	0			REV__ENST00000558773.1_1_15:89453637-89453814:-|nuORF	REV__ENST00000558773.1_1_15:89453637-89453814:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.8158569335938	2	524.315503	1046.61645	-0.24176	-0.00012676	-3.9096	-0.0020498	-4.1513	-0.0021766	524.8158455272647	122.36	0.44487	122.15	121.97	122.41	-0.21803					14	8	3	0	0	0	0.026578	1	11842	11842		65.897	0.094285	1	27936	+		29422	27588	24128	24155	32656	32656					0.09500995867756501
LFGNLTEMVE	10	Unmodified	_LFGNLTEMVE_					0	0	0		nc|ENSG00000156299|Q13009-2|TIAM1;ENSG00000156299|ENST00000541036|TIAM1	nc|ENSG00000156299|Q13009-2|TIAM1	nc|ENSG00000156299|Q13009-2|TIAM1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.8333740234375	2	576.783907	1151.55326	0.24185	0.0001395	4.4682	0.0025772	4.71	0.0027167	577.2876226663512	84.35	1.2795	81.687	81.265	82.544	-2.6629					77	26	4	0	0	0	0.026782	1	7120	7120		37.812	12.361	1	186880			29423	5834	24129	24156	32657	32657					-0.016453577024549304
LFGSLIPTIVS	11	Unmodified	_LFGSLIPTIVS_					0	0	0		ENSG00000258083|ENST00000641559|OR9A4	ENSG00000258083|ENST00000641559|OR9A4	ENSG00000258083|ENST00000641559|OR9A4	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.2640991210938	2	573.842082	1145.66961	1.275	0.00073163	0.10369	5.95E-05	1.3787	0.00079113	573.8421006528862	130.61	0.62274	130.61	130.34	130.96	0					23	12	3	0	0	0	0.025638	1	15181	15181		30.318	2.2362	1	95354			29424	9477	24130	24157	32658	32658					0.10260328859749279
LFGSVFLIAL	10	Unmodified	_LFGSVFLIAL_					0	0	0		ENSG00000171051|ENST00000304748|FPR1	ENSG00000171051|ENST00000304748|FPR1	ENSG00000171051|ENST00000304748|FPR1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3314208984375	2	540.328611	1078.64267	0.34656	0.00018726	2.5593	0.0013829	2.9059	0.0015701	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.71192	1	13559	13559		29.15	1.2673	1	342200			29425	7164	24131	24158	32659	32659					0.1064926503922834
LFGTSGRPM	9	Unmodified	_LFGTSGRPM_					0	0	0			REV__ENST00000421234.5_1_9:94909893-94910408:+|nuORF	REV__ENST00000421234.5_1_9:94909893-94910408:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.2564697265625	2	483.247295	964.480036	-0.083446	-4.0325E-05	-0.025891	-1.2512E-05	-0.10934	-5.2837E-05	483.24740211985795	64.005	1.0728	60.53	60.393	61.466	-3.475					26	21	2	0	0	0	0.027418	1	4522	4522		58.782	0	1	224170	+		29426	25600	24132	24159	32660	32660					-0.0036244163441097044
LFGVLGNILVI	11	Unmodified	_LFGVLGNILVI_					0	0	0		nc|ENSG00000120907|P35348-3|ADRA1A;nc|ENSG00000120907|P35348-4|ADRA1A;ENSG00000120907|ENST00000380573|ADRA1A;nc|ENSG00000120907|P35348-2|ADRA1A;nc|ENSG00000120907|P35348-5|ADRA1A;nc|ENSG00000120907|P35348-7|ADRA1A;nc|ENSG00000120907|P35348-6|ADRA1A;nc|ENSG00000120907|P35348-8|ADRA1A;nc|ENSG00000120907|P35348-9|ADRA1A	nc|ENSG00000120907|P35348-3|ADRA1A	nc|ENSG00000120907|P35348-3|ADRA1A	MULTI-SECPEP	OvCa9_classI_Rep3	3	579.28955078125	2	579.368267	1156.72198	-1.7923	-0.0010384	-2.5092	-0.0014537	-4.3015	-0.0024922	579.3668853398376	101.76	0.52632	100.24	100.06	100.58	-1.5211					12	9	2	0	0	0	0.025416	1	6979	6979		26.693	0	1	13639			29427	3459	24133	24160	32661	32661					0.14988911993373222
LFGVTIPIF	9	Unmodified	_LFGVTIPIF_					0	0	0			REV__tr|A0A553SKP7|A0A553SKP7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_19095PE=4SV=1	REV__tr|A0A553SKP7|A0A553SKP7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_19095PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.8117370605469	2	503.802229	1005.5899	0.47434	0.00023897	-2.129	-0.0010726	-1.6547	-0.00083363	503.80093114834176	114.3	0.49968	114.3	114.01	114.51	0					20	10	3	0	0	0	0.027462	1	13010	13010		33.516	0	1	307420	+		29428	30143	24134	24161	32662	32662					0.08733306976432686
LFHESLILV	9	Unmodified	_LFHESLILV_					0	0	0			REV__tr|A0A7D6ZW84|A0A7D6ZW84_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_06955PE=3SV=1	REV__tr|A0A7D6ZW84|A0A7D6ZW84_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_06955PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	535.8331298828125	2	535.815867	1069.61718	-1.6988	-0.00091024	1.7633	0.0009448	0.0645	3.456E-05	535.8165792160814	116.29	1.4848	116.17	115.73	117.22	-0.12149					70	29	4	0	0	0	0.027462	1	11191	11191		50.025	11.218	1	112750	+		29429	32277	24135	24162	32663	32663					0.08515790516798916
LFHGSLAFTY	10	Unmodified	_LFHGSLAFTY_					0	0	0		ENSG00000162881|ENST00000378661|OXER1	ENSG00000162881|ENST00000378661|OXER1	ENSG00000162881|ENST00000378661|OXER1	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.289306640625	2	578.295299	1154.57605	-7.0214	-0.0040605	-2.7674	-0.0016004	-9.7888	-0.0056608	578.2935937226971	160.38	4.1596	158.77	158.05	162.21	-1.6101					391	105	5	0	0	0	0.56767	1	16068	16068		45.952	1.8352	1	1912500			29430	6243	24136	24163	32664	32664					0.004940294773405185
LFHKIVSK	8	Unmodified	_LFHKIVSK_					0	0	0		ENSG00000114439|ENST00000325805|BBX	ENSG00000114439|ENST00000325805|BBX	ENSG00000114439|ENST00000325805|BBX	MULTI-MSMS	OvCa9_classI_Rep2	2	486.305419921875	2	486.30547	970.596387	0.60247	0.00029298	-1.3637	-0.00066315	-0.76119	-0.00037017	486.3047947264386	124.97	2.7662	124.74	124.37	127.13	-0.2359					156	55	5	0	0	0	0.64377	2	12220	12172;12220		54.765	3.4292	1	3410600			29431	3020	24137	24164	32665;32666	32666					0.10991244927799926
LFHKIVSK	8	Unmodified	_LFHKIVSK_					0	0	0		ENSG00000114439|ENST00000325805|BBX	ENSG00000114439|ENST00000325805|BBX	ENSG00000114439|ENST00000325805|BBX	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.30401611328125	2	486.30547	970.596387	-1.8727	-0.00091069	1.17	0.00056898	-0.70267	-0.00034171	486.3060163931478	126.56	4.5912	125.14	124.48	129.07	-1.4143					192	91	5	0	0	0	0.61758	2	12041	12041;12052		60.294	7.9948	1	3302400			29432	3020	24137	24164	32667;32668	32667					0.10991244927799926
LFHLCFISI	9	Unmodified	_LFHLCFISI_					0	0	0		ENSG00000146383|ENST00000275198|TAAR6	ENSG00000146383|ENST00000275198|TAAR6	ENSG00000146383|ENST00000275198|TAAR6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.7808837890625	2	546.799163	1091.58377	-0.25781	-0.00014097	3.3308	0.0018213	3.073	0.0016803	546.8004775743235	123.52	0.89161	122.16	121.51	122.4	-1.3666					21	17	2	0	0	0	0.027373	1	11704	11704		60.294	0	1	11350			29433	5287	24138	24165	32669	32669					0.041644654732408526
LFHLILLAL	9	Unmodified	_LFHLILLAL_					0	0	0			REV__HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|19|1|sense	REV__HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|19|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.8547973632812	2	526.846971	1051.67939	-0.46624	-0.00024564	-3.0029	-0.0015821	-3.4691	-0.0018277	526.8453229856848	128.44	0.40353	126.98	126.85	127.25	-1.4565					11	7	2	0	0	0	0.027462	1	12280	12280		29.842	18.976	1	8548.2	+		29434	28279	24139	24166	32670	32670					0.1556156165579523
LFHLSQLEF	9	Unmodified	_LFHLSQLEF_					0	0	0		ENST00000373109.6_1_10:73820245-73820362:-|nuORF	ENST00000373109.6_1_10:73820245-73820362:-|nuORF	ENST00000373109.6_1_10:73820245-73820362:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.3214111328125	2	567.303124	1132.5917	-1.2404	-0.00070367	-2.5709	-0.0014585	-3.8113	-0.0021621	567.3016745656217	86.233	1.7118	84.012	83.486	85.198	-2.2204					40	33	2	0	0	0	0.027304	1	5066	5066		87.696	34.607	1	93378			29435	11000	24140	24167	32671	32671					0.030703159943641367
LFHQKRQL	8	Unmodified	_LFHQKRQL_					0	0	0		nc|ENSG00000274391|P56180-3|TPTE;nc|ENSG00000274391|P56180-2|TPTE;ENSG00000274391|ENST00000618007|TPTE;nc|ENSG00000274391|P56180-4|TPTE	nc|ENSG00000274391|P56180-3|TPTE	nc|ENSG00000274391|P56180-3|TPTE	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.31884765625	2	535.3169	1068.61925	-1.353	-0.00072428	4.4802	0.0023983	3.1272	0.0016741	535.3188478431949	82.653	1.1726	79.97	79.635	80.808	-2.683					56	23	3	0	0	0	0.7043	1	6850	6850		42.474	0.078325	1	251840			29436	9564	24141	24168	32672	32672					0.08768264045261276
LFHQKRQL	8	Unmodified	_LFHQKRQL_					0	0	0		nc|ENSG00000274391|P56180-3|TPTE;nc|ENSG00000274391|P56180-2|TPTE;ENSG00000274391|ENST00000618007|TPTE;nc|ENSG00000274391|P56180-4|TPTE	nc|ENSG00000274391|P56180-3|TPTE	nc|ENSG00000274391|P56180-3|TPTE	MULTI-MATCH	OvCa9_classI_Rep3	3		2	535.3169	1068.61925	-0.035029	-1.8751E-05	3.2482	0.0017388	3.2132	0.0017201	535.3182758654408	82.389	1.595	80.093	79.534	81.129	-2.2963	0.061742	-0.00048472	NaN	42.474	77	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	366070			29437	9564	24141	24168							0.08768264045261276
LFHQPNFDR	9	Unmodified	_LFHQPNFDR_					0	0	0			REV__ENSG00000197838|ENST00000330436|CYP2A13	REV__ENSG00000197838|ENST00000330436|CYP2A13	MULTI-MSMS	OvCa9_classI_Rep3	3	587.296875	2	587.293622	1172.57269	-1.5752	-0.00092511	4.0666	0.0023883	2.4914	0.0014632	587.295888726077	118.54	0.74387	117.51	117.19	117.93	-1.0271					51	14	4	0	0	0	0.63422	1	8968	8968		27.882	1.1893	1	1066300	+		29438	22955	24142	24169	32673	32673					-0.006692205766739789
LFHSLKLLV	9	Unmodified	_LFHSLKLLV_					0	0	0		SACS|p.V3288Tfs*46|1|0.07|ENSG00000151835|chr13:23334014-23334015|-/TGAAGGGATACTTTTTGTAAGTACGT|frameshift_variant;ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	SACS|p.V3288Tfs*46|1|0.07|ENSG00000151835|chr13:23334014-23334015|-/TGAAGGGATACTTTTTGTAAGTACGT|frameshift_variant	SACS|p.V3288Tfs*46|1|0.07|ENSG00000151835|chr13:23334014-23334015|-/TGAAGGGATACTTTTTGTAAGTACGT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.3411254882812	2	535.342052	1068.66955	-1.255	-0.00067184	-3.0944	-0.0016565	-4.3493	-0.0023284	535.340402065357	48.271	2.0484	45.163	44.287	46.335	-3.1077					108	39	4	0	0	0	0.42676	1	2665	2665		49.442	0	1	578390			29439	5587	24143	24170	32674	32674					0.13796373650393434
LFHSWARL	8	Unmodified	_LFHSWARL_					0	0	0			REV__MDN1|p.I5359Kfs*8|1|0.1|ENSG00000112159|chr6:89650154-89650155|-/CATAGCT|frameshift_variant	REV__MDN1|p.I5359Kfs*8|1|0.1|ENSG00000112159|chr6:89650154-89650155|-/CATAGCT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.2841186523438	2	515.285069	1028.55558	-1.8262	-0.00094104	-3.616	-0.0018633	-5.4423	-0.0028043	515.2832089324711	107.23	3.0946	105.36	105.01	108.11	-1.8785					136	60	5	0	0	0	0.74394	1	9848	9848		13.775	1.5685	1	4662000	+		29440	18079	24144	24171	32675	32675					0.04244903608173445
LFHVSVVVVP	10	Unmodified	_LFHVSVVVVP_					0	0	0			REV__nc|ENSG00000214960|A4D126-2|CRPPA	REV__nc|ENSG00000214960|A4D126-2|CRPPA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.3118286132812	2	548.331685	1094.64882	-0.42533	-0.00023322	0.93578	0.00051312	0.51045	0.00027989	548.8330960787939	39.495	0.9452	36.568	36.346	37.291	-2.9264					41	18	4	0	0	0	0.026982	1	1684	1684		30.504	6.3009	1	61335	+		29441	23307	24145	24172	32676	32676					0.10527783270754298
LFHWSIYL	8	Unmodified	_LFHWSIYL_					0	0	0		L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|317|3|anti-sense;L1PA7_dup9238|chr10:48372221-48377370:+|1.4943041569802586|0.2795461482764699|2.42|429.0|166|1|anti-sense	L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|317|3|anti-sense	L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|317|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	539.79296875	2	539.789653	1077.56475	2.7408	0.0014795	1.5459	0.00083444	4.2867	0.0023139	539.7906372326879	107.72	1.4814	107.72	107.1	108.58	0					70	34	4	0	0	0	0.59103	1	12145	12145		65.897	5.6035	1	7413000			29442	14725	24146	24173	32677	32677					0.029072521738498835
LFIAIVNGSSL	11	Unmodified	_LFIAIVNGSSL_					0	0	0		L1PA7_dup7105|chr8:140902960-140905176:-|1.928403484305532|0.1763547852274372|3.45|429.0|96|2|anti-sense	L1PA7_dup7105|chr8:140902960-140905176:-|1.928403484305532|0.1763547852274372|3.45|429.0|96|2|anti-sense	L1PA7_dup7105|chr8:140902960-140905176:-|1.928403484305532|0.1763547852274372|3.45|429.0|96|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3289184570312	2	567.331882	1132.64921	-2.6412	-0.0014984	-1.2123	-0.00068778	-3.8535	-0.0021862	567.3310908608092	141.92	3.9983	140.91	138.91	142.91	-1.0106					224	80	5	0	0	0	0.69455	1	11804	11804		31.53	2.3598	1	127690			29443	14753	24147	24174	32678	32678					0.0881915819995811
LFIATSQKF	9	Unmodified	_LFIATSQKF_					0	0	0		nc|ENSG00000025770|Q6IBW4-2|NCAPH2;ENSG00000025770|ENST00000420993|NCAPH2;nc|ENSG00000025770|Q6IBW4-4|NCAPH2	nc|ENSG00000025770|Q6IBW4-2|NCAPH2	nc|ENSG00000025770|Q6IBW4-2|NCAPH2	MULTI-MSMS	OvCa99_classI_Rep5	1	527.801513671875	2	527.800217	1053.58588	2.121	0.0011195	-1.9823	-0.0010463	0.1387	7.3204E-05	527.7987540587784	93.91	0.97	93.91	93.59	94.56	0					61	22	4	0	0	0	0.0094524	1	10194	10194		171.38	54.481	1	4276500			29444	1048	24148	24175	32679	32679					0.06123217482695509
LFIAVICSFI	10	Unmodified	_LFIAVICSFI_					0	0	0		tr|A0A553SSB8|A0A553SSB8_NIACISignalpeptidaseIOS=NialliacirculansOX=1397GN=CEQ21_02820PE=4SV=1	tr|A0A553SSB8|A0A553SSB8_NIACISignalpeptidaseIOS=NialliacirculansOX=1397GN=CEQ21_02820PE=4SV=1	tr|A0A553SSB8|A0A553SSB8_NIACISignalpeptidaseIOS=NialliacirculansOX=1397GN=CEQ21_02820PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	563.3186645507812	2	563.322471	1124.63039	-3.8795	-0.0021854	-2.6837	-0.0015118	-6.5631	-0.0036972	563.3208339373161	155.36	0.8447	155.13	154.8	155.64	-0.22697					43	26	2	0	0	0	0.69986	1	15834	15834		30.504	4.9296	1	63890			29445	34356	24149	24176	32680	32680					0.07305905304542648
LFICCRPL	8	Unmodified	_LFICCRPL_					0	0	0			REV__ENST00000337979.8_1_11:59568608-59568719:+|nuORF	REV__ENST00000337979.8_1_11:59568608-59568719:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	482.75927734375	2	482.758984	963.503414	2.1391	0.0010327	0.25524	0.00012322	2.3944	0.0011559	482.7588804234167	57.803	3.1186	54.676	53.456	56.575	-3.1264					158	85	3	0	0	0	0.74679	1	1812	1812		28.254	0	1	89902	+		29446	24603	24150	24177	32681	32681					0.02020280878559788
LFICKLTFQR	10	Unmodified	_LFICKLTFQR_					0	0	0		ENSG00000154438|ENST00000284629|ASZ1;nc|ENSG00000154438|Q8WWH4-2|ASZ1	ENSG00000154438|ENST00000284629|ASZ1	ENSG00000154438|ENST00000284629|ASZ1	MULTI-SECPEP	OvCa99_classI_Rep5	1	423.5550231933594	3	423.577643	1267.7111	-0.48481	-0.00020535	-2.7704	-0.0011735	-3.2552	-0.0013788	423.57633977551535	41.846	0.69228	41.846	41.637	42.329	0					43	15	4	0	0	0	0.026843	1	2627	2627		54.722	47.703	1	994360			29447	5736	24151	24178	32682	32682					0.08795186347401796
LFICNAGVAPI	11	Unmodified	_LFICNAGVAPI_					0	0	0			REV__tr|A0A7D6W1L8|A0A7D6W1L8_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03195PE=3SV=1	REV__tr|A0A7D6W1L8|A0A7D6W1L8_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03195PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.7739868164062	2	559.307352	1116.60015	3.0344	0.0016972	-3.8386	-0.002147	-0.80424	-0.00044982	559.305303004304	100.66	0.53578	100.66	100.44	100.98	0					28	12	3	0	0	0	0.025366	1	11190	11190		53.351	2.016	1	1142200	+		29448	31885	24152	24179	32683	32683					0.04651546639342996
LFIDKTTGHF	10	Unmodified	_LFIDKTTGHF_					0	0	0		nc|ENSG00000107815|Q96RR1-3|TWNK;nc|ENSG00000107815|Q96RR1-2|TWNK;ENSG00000107815|ENST00000311916|TWNK	nc|ENSG00000107815|Q96RR1-3|TWNK	nc|ENSG00000107815|Q96RR1-3|TWNK	MULTI-MSMS	OvCa99_classI_Rep5	1	589.8171997070312	2	589.813856	1177.61316	0.084939	5.0098E-05	2.2877	0.0013493	2.3727	0.0013994	589.8152536393142	70.859	3.0313	70.859	70.369	73.4	0					178	75	5	0	0	0	0.11378	1	6790	6790		110.12	6.0631	1	75284000			29449	2617	24153	24180	32684	32684					0.031457010230724336
LFIFCFLPE	9	Carbamidomethyl (C)	_LFIFC(Carbamidomethyl (C))FLPE_	LFIFC(1)FLPE		LFIFC(75)FLPE		0	1	0		ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MULTI-MSMS	OvCa99_classI_Rep5	1	593.3072509765625	2	593.304278	1184.594	0.98227	0.00058278	3.9509	0.0023441	4.9332	0.0029269	593.3064937099855	153.02	5.598	153.02	152.55	158.15	0					237	114	5	0	0	0	0.21078	1	17952	17952		74.517	6.0319	1	2333200			29450	2730	24154	24181	32685	32685	25				0.009090284078183686
LFIFWVTLR	9	Unmodified	_LFIFWVTLR_					0	0	0			REV__LGR4|p.F803Sfs*13|1|0.15|ENSG00000205213|chr11:27368315-27368315|A/-|frameshift_variant	REV__LGR4|p.F803Sfs*13|1|0.15|ENSG00000205213|chr11:27368315-27368315|A/-|frameshift_variant	MSMS	OvCa9_classI_Rep4_	4	597.8553466796875	2	597.855327	1193.6961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	151.54	1	150.1	149.6	150.6	-1.4344								0	0	0	0.2824	1	14979	14979		12.959	1.4482	1		+		29451	23205	24155	24182	32686	32686					0.10700062541741318
LFIIGQLEP	9	Unmodified	_LFIIGQLEP_					0	0	0			REV__ENSG00000197437|ENST00000642119|OR13G1	REV__ENSG00000197437|ENST00000642119|OR13G1	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.8226928710938	2	515.302593	1028.59063	1.0083	0.00051957	0.52771	0.00027193	1.536	0.00079151	515.8025005883072	74.605	0.24442	74.605	74.517	74.761	0					7	5	2	0	0	0	0.027441	1	7409	7409		65.803	26.997	1	161180	+		29452	22924	24156	24183	32687	32687					0.07748101625452364
LFIKKLGEE	9	Unmodified	_LFIKKLGEE_					0	0	0			REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	MULTI-MSMS	OvCa99_classI_Rep5	1	539.328369140625	2	538.82115	1075.62775	0.98933	0.00053307	1.023	0.00055119	2.0123	0.0010843	539.3232025782999	156.41	3.6435	156.41	155.73	159.38	0					185	73	4	0	0	0	0.13482	1	18310	18310		87.754	8.0417	1	206920	+		29453	19033	24157	24184	32688	32688					0.0929577317122039
LFILEDLDN	9	Unmodified	_LFILEDLDN_					0	0	0		NLRP11|p.E606Gfs*4|1|0.05|ENSG00000179873|chr19:55808793-55808793|T/-|frameshift_variant;nc|ENSG00000179873|P59045-3|NLRP11;nc|ENSG00000179873|P59045-2|NLRP11;ENSG00000179873|ENST00000589093|NLRP11	NLRP11|p.E606Gfs*4|1|0.05|ENSG00000179873|chr19:55808793-55808793|T/-|frameshift_variant	NLRP11|p.E606Gfs*4|1|0.05|ENSG00000179873|chr19:55808793-55808793|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	546.2863159179688	2	546.284597	1090.55464	-0.56606	-0.00030923	3.5606	0.0019451	2.9945	0.0016359	546.2863258210423	137.01	1.2304	136.78	136.4	137.63	-0.22697					54	25	3	0	0	0	0.59259	1	13617	13617		32.812	3.6629	1	145390			29454	7845	24158	24185	32689	32689					0.012985996579573111
LFILFCQMSI	10	Unmodified	_LFILFCQMSI_					0	0	0		tr|A0A553SHB9|A0A553SHB9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_12555PE=4SV=1	tr|A0A553SHB9|A0A553SHB9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_12555PE=4SV=1	tr|A0A553SHB9|A0A553SHB9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_12555PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.5374755859375	3	405.548584	1213.62392	0.98387	0.00039901	-1.1722	-0.00047538	-0.18832	-7.6371E-05	405.54785337590266	73.134	0.24046	73.134	73.035	73.276	0					6	5	2	0	0	0	0.027033	1	7181	7181		20.837	14.516	1	132460			29455	33254	24159	24186	32690	32690					0.025656440815055248
LFILFLKWD	9	Unmodified	_LFILFLKWD_					0	0	0		ENST00000322886.11_2_12:77417263-77417425:-|nuORF	ENST00000322886.11_2_12:77417263-77417425:-|nuORF	ENST00000322886.11_2_12:77417263-77417425:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	598.83740234375	2	597.84971	1193.68487	-0.091236	-5.4545E-05	-4.2349	-0.0025319	-4.3262	-0.0025864	597.8472807928083	81.085	1.5825	79.437	79.013	80.596	-1.6485					39	30	2	0	0	0	0.027462	1	6892	6892		35.618	0	1	49731			29456	10386	24160	24187	32691	32691					0.09577240447606528
LFILFLRRFWW	11	Unmodified	_LFILFLRRFWW_					0	0	0			REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	REV__ENST00000281830.3_1_2:223918801-223918864:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.3099975585938	3	532.978247	1595.91291	0.057949	3.0886E-05	-1.7791	-0.00094821	-1.7211	-0.00091732	533.311216897618	52.78	0.99871	52.78	52.39	53.389	0					31	22	2	0	0	0	0.026525	1	4184	4184		3.6191	2.2003	1	183690	+		29457	24117	24161	24188	32692	32692					0.13879038095274154
LFILGIVMCL	10	Unmodified	_LFILGIVMCL_					0	0	0			REV__ENST00000583478.1_1_17:61514659-61514908:-|nuORF	REV__ENST00000583478.1_1_17:61514659-61514908:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	561.3265991210938	2	561.326699	1120.63885	0.69997	0.00039291	-3.9358	-0.0022093	-3.2359	-0.0018164	561.3243393238062	58.28	0.62614	58.28	58.069	58.696	0					30	14	3	0	0	0	0.5794	1	4944	4944		44.531	7.372	1	1832100	+		29458	16449	24162	24189	32693	32693					0.08335135949505457
LFILLKKK	8	Unmodified	_LFILLKKK_					0	0	0			REV__ENST00000518096.1_1_8:30209440-30209518:+|nuORF	REV__ENST00000518096.1_1_8:30209440-30209518:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.7602844238281	2	501.857338	1001.70012	-0.68406	-0.0003433	-1.1091	-0.00055659	-1.7931	-0.00089989	501.8565783253213	65.447	0.27855	65.447	65.347	65.625	0					9	6	2	0	0	0	0.028476	1	6022	6022		33.516	6.7195	1	277830	+		29459	27028	24163	24190	32694	32694					0.199341520354551
LFILLSGCLP	10	Unmodified	_LFILLSGCLP_					0	0	0		MTHFD1-CASK|1|fusion;MTHFD1-CASK|3|fusion;MTHFD1-CASK|2|fusion;ENSG00000147044|ENST00000378163|CASK;nc|ENSG00000147044|O14936-2|CASK;nc|ENSG00000147044|O14936-6|CASK;nc|ENSG00000147044|O14936-4|CASK;nc|ENSG00000147044|O14936-3|CASK;CASK|p.A814Kfs*50|1|0.31|ENSG00000147044|chrX:41531075-41531088|TCCCATACATCGCA/-|frameshift_variant;ENST00000486402.1_1_X:41519640-41524682:-|nuORF	MTHFD1-CASK|1|fusion	MTHFD1-CASK|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.2915649414062	2	538.314646	1074.61474	1.5805	0.00085082	3.1962	0.0017205	4.7767	0.0025714	538.3162481173995	108.88	1.2325	108.88	108.67	109.9	0					37	27	2	0	0	0	0.026822	1	12391	12391		47.916	0	1	436210			29460	14842	24164	24191	32695	32695					0.08041618787501648
LFILTYKI	8	Unmodified	_LFILTYKI_					0	0	0			REV__tr|A0A7D6VN24|A0A7D6VN24_9CLOTDUF3784domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14035PE=4SV=1	REV__tr|A0A7D6VN24|A0A7D6VN24_9CLOTDUF3784domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14035PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.2754821777344	2	505.817879	1009.6212	-1.8985	-0.00096029	-2.6682	-0.0013496	-4.5667	-0.0023099	505.8163189025902	84.872	0.74441	83.326	83.001	83.745	-1.5462					22	14	2	0	0	0	0.028476	1	7313	7313		73.975	21.676	1	14942	+		29461	31157	24165	24192	32696	32696					0.1167788001050667
LFILTYKI	8	Unmodified	_LFILTYKI_					0	0	0			REV__tr|A0A7D6VN24|A0A7D6VN24_9CLOTDUF3784domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14035PE=4SV=1	REV__tr|A0A7D6VN24|A0A7D6VN24_9CLOTDUF3784domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14035PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.27593994140625	2	505.817879	1009.6212	-1.5948	-0.00080669	-2.8268	-0.0014299	-4.4216	-0.0022365	505.8162972113644	85.595	0.55145	83.375	83.084	83.636	-2.2204					23	10	3	0	0	0	0.028476	1	5006	5006		65.803	7.0212	1	26231	+		29462	31157	24165	24192	32697	32697					0.1167788001050667
LFIMGMRSI	9	2 Oxidation (M)	_LFIM(Oxidation (M))GM(Oxidation (M))RSI_		LFIM(1)GM(1)RSI		LFIM(66)GM(66)RSI	0	0	2			REV__ENSG00000187240|ENST00000375735|DYNC2H1	REV__ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MSMS	OvCa99_classI_Rep5	1	550.2936401367188	2	550.285563	1098.55657	0.30205	0.00016621	2.2113	0.0012169	2.5134	0.0013831	550.2856618310253	161.39	0.76099	161.39	161.11	161.87	0					28	14	3	0	0	0	0.27001	1	18919	18919		66.429	13.078	1	67847	+		29463	22636	24166	24193	32698	32698		522;523			0.011236138705726262
LFIMQPVYN	9	Unmodified	_LFIMQPVYN_					0	0	0		tr|A0A7D6VTC6|A0A7D6VTC6_9CLOTFlagellarbiosyntheticproteinFliPOS=ClostridiumintestinaleOX=36845GN=fliPPE=3SV=1	tr|A0A7D6VTC6|A0A7D6VTC6_9CLOTFlagellarbiosyntheticproteinFliPOS=ClostridiumintestinaleOX=36845GN=fliPPE=3SV=1	tr|A0A7D6VTC6|A0A7D6VTC6_9CLOTFlagellarbiosyntheticproteinFliPOS=ClostridiumintestinaleOX=36845GN=fliPPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	562.7925415039062	2	562.794078	1123.5736	2.6768	0.0015065	-3.772	-0.0021229	-1.0953	-0.0006164	562.7918950148166	137.28	0.67621	137.28	137.01	137.69	0					33	13	4	0	0	0	0.46377	1	16029	16029		45.952	1.8352	1	163380			29464	35106	24167	24194	32699	32699					0.016758577480231907
LFINMFMV	8	Unmodified	_LFINMFMV_					0	0	0		tr|A0A7D6VSB9|A0A7D6VSB9_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_08655PE=4SV=1	tr|A0A7D6VSB9|A0A7D6VSB9_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_08655PE=4SV=1	tr|A0A7D6VSB9|A0A7D6VSB9_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_08655PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7624816894531	2	507.761192	1013.50783	0.48572	0.00024663	2.6024	0.0013214	3.0881	0.001568	507.76242082287587	126.44	3.901	126.2	123.43	127.33	-0.2359					157	78	4	0	0	0	0.69415	1	12346	12346		44.531	2.0566	1	953460			29465	35011	24168	24195	32700	32700					0.0016174530146599864
LFINRILL	8	Unmodified	_LFINRILL_					0	0	0			REV__nc|ENSG00000103534|Q6UXY8-2|TMC5	REV__nc|ENSG00000103534|Q6UXY8-2|TMC5	MULTI-MSMS	OvCa99_classI_Rep5	1	501.3299865722656	2	501.328945	1000.64334	1.1785	0.00059084	0.67666	0.00033923	1.8552	0.00093006	501.83075672706985	144.33	0.49014	144.33	144.06	144.55	0					15	9	3	0	0	0	0.60486	1	16871	16871		62.978	2.6845	1	46846	+		29466	28777	24169	24196	32701	32701					0.14304104478935642
LFIPPAKII	9	Unmodified	_LFIPPAKII_					0	0	0		ENSG00000214866|ENST00000399143|DCDC2C	ENSG00000214866|ENST00000399143|DCDC2C	ENSG00000214866|ENST00000399143|DCDC2C	MULTI-MSMS	OvCa9_classI_Rep2	2	506.3306579589844	2	506.333696	1010.65284	-0.49607	-0.00025117	-3.7021	-0.0018745	-4.1982	-0.0021257	506.331740533061	135.27	1.2754	135.05	134.74	136.01	-0.22697					65	25	4	0	0	0	0.34496	1	13434	13434		57.811	8.2752	1	139920			29467	9187	24170	24197	32702	32702					0.14793872764460048
LFIVEYLF	8	Unmodified	_LFIVEYLF_					0	0	0		tr|A0A553SPZ5|A0A553SPZ5_NIACIABCtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_15435PE=3SV=1	tr|A0A553SPZ5|A0A553SPZ5_NIACIABCtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_15435PE=3SV=1	tr|A0A553SPZ5|A0A553SPZ5_NIACIABCtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_15435PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8171997070312	2	522.294236	1042.57392	-0.95181	-0.00049713	3.2383	0.0016913	2.2865	0.0011942	522.2959955759313	29.211	1.8946	29.211	28.588	30.483	0					77	37	5	0	0	0	0.028476	1	1153	1153		37.028	2.8559	1	5920500			29468	34098	24171	24198	32703	32703					0.054336007395022534
LFIVGAIMVPY	11	Unmodified	_LFIVGAIMVPY_					0	0	0			REV__tr|A0A553ST56|A0A553ST56_NIACIUracilpermeaseOS=NialliacirculansOX=1397GN=CEQ21_04275PE=3SV=1	REV__tr|A0A553ST56|A0A553ST56_NIACIUracilpermeaseOS=NialliacirculansOX=1397GN=CEQ21_04275PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	408.2353515625	3	408.234994	1221.68315	0.94228	0.00038467	0.14187	5.7915E-05	1.0841	0.00044259	408.2350333498439	23.067	1.0429	23.067	22.894	23.937	0					40	20	4	0	0	0	0.63561	1	304	304		41.427	12.257	1	562900	+		29469	30919	24172	24199	32704	32704					0.08117863367374412
LFIVKPQLI	9	Unmodified	_LFIVKPQLI_					0	0	0			REV__nc|ENSG00000123572|Q7Z2Y5-3|NRK	REV__nc|ENSG00000123572|Q7Z2Y5-3|NRK	MULTI-MSMS	OvCa99_classI_Rep5	1	535.8555908203125	2	535.852253	1069.68995	-2.4677	-0.0013223	-3.7166	-0.0019916	-6.1844	-0.0033139	535.8501080659071	103.93	0.80774	103.93	103.64	104.45	0					47	18	4	0	0	0	0.53957	1	11629	11629		38.806	5.2906	1	1063500	+		29470	28826	24173	24200	32705	32705					0.1578954431022339
LFIVTTTLK	9	Unmodified	_LFIVTTTLK_					0	0	0			REV__ENST00000563290.5_1_15:77057753-77059287:-|nuORF	REV__ENST00000563290.5_1_15:77057753-77059287:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.3259887695312	2	518.326068	1034.63758	-1.0284	-0.00053303	-1.8848	-0.00097696	-2.9132	-0.00151	518.3250657043614	70.688	2.5247	67.207	66.836	69.361	-3.4812					145	51	4	0	0	0	0.55588	1	5339	5339		37.159	0	1	2922500	+		29471	27656	24174	24201	32706	32706					0.12164961176586075
LFKAKRKSI	9	Unmodified	_LFKAKRKSI_					0	0	0		ENST00000507549.7_1_5:69716099-69717567:+|nuORF	ENST00000507549.7_1_5:69716099-69717567:+|nuORF	ENST00000507549.7_1_5:69716099-69717567:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.82958984375	2	545.858401	1089.70225	0.35867	0.00019578	2.1324	0.001164	2.4911	0.0013598	545.8594616533244	97.54	0.30315	95.162	95.065	95.368	-2.3786					9	5	2	0	0	0	0.027462	1	8654	8654		44.117	16.235	1	12382			29472	12930	24175	24202	32707	32707					0.16098580773268623
LFKELPSVR	9	Unmodified	_LFKELPSVR_					0	0	0		tr|A0A553SIN3|A0A553SIN3_NIACIPolysaccharidepyruvyltransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15180PE=4SV=1	tr|A0A553SIN3|A0A553SIN3_NIACIPolysaccharidepyruvyltransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15180PE=4SV=1	tr|A0A553SIN3|A0A553SIN3_NIACIPolysaccharidepyruvyltransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15180PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	544.8221435546875	2	544.826766	1087.63898	-4.363	-0.0023771	0.3268	0.00017805	-4.0362	-0.002199	544.82700234604	154.97	0.71278	154.74	154.48	155.19	-0.22696					46	16	4	0	0	0	0.70685	1	15814	15814		15.642	0.77694	1	60082			29473	33400	24176	24203	32708	32708					0.09866595265361866
LFKFLLVQN	9	Unmodified	_LFKFLLVQN_					0	0	0			REV__nc|ENSG00000156931|Q8N3P4-2|VPS8	REV__nc|ENSG00000156931|Q8N3P4-2|VPS8	MULTI-MSMS	OvCa9_classI_Rep3	3	561.3394165039062	2	561.33951	1120.66447	-1.7513	-0.00098306	2.027	0.0011378	0.27571	0.00015477	561.3403149764221	137.83	1.0288	136.74	136.43	137.46	-1.0858					43	20	3	0	0	0	0.56889	1	11236	11236		35.618	0	1	45230	+		29474	20505	24177	24204	32709	32709					0.10896069787804663
LFKGNEDID	9	Unmodified	_LFKGNEDID_					0	0	0			REV__tr|A0A7D6ZTI3|A0A7D6ZTI3_9CLOTElectrontransferflavoproteinsubunitalpha/FixBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20380PE=3SV=1	REV__tr|A0A7D6ZTI3|A0A7D6ZTI3_9CLOTElectrontransferflavoproteinsubunitalpha/FixBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20380PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2969360351562	2	525.758746	1049.50294	1.3609	0.00071549	-0.10724	-5.638E-05	1.2536	0.00065911	525.759165115267	133.38	0.63725	133.38	133.04	133.67	0					23	13	3	0	0	0	0.027462	1	15490	15490		44.117	1.7207	1	106070	+		29475	32204	24178	24205	32710	32710					-0.019831440359666885
LFKGWGLL	8	Unmodified	_LFKGWGLL_					0	0	0		nc|ENSG00000132153|Q7L2E3-3|DHX30;ENSG00000132153|ENST00000445061|DHX30;nc|ENSG00000132153|Q7L2E3-2|DHX30;ENST00000441384.5_1_3:47852163-47883242:+|nuORF	nc|ENSG00000132153|Q7L2E3-3|DHX30	nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-MSMS	OvCa9_classI_Rep3	3	467.2804260253906	2	467.281463	932.548374	-0.47931	-0.00022397	-3.868	-0.0018074	-4.3473	-0.0020314	467.2795250703273	97.402	0.74762	95.642	95.362	96.11	-1.7595					48	14	4	0	0	0	0.68312	1	6464	6464		46.766	2.6496	1	638550			29476	4112	24179	24206	32711	32711					0.07940171007737717
LFKGYRVT	8	Unmodified	_LFKGYRVT_					0	0	0			REV__ENSG00000146350|ENST00000398212|TBC1D32	REV__ENSG00000146350|ENST00000398212|TBC1D32	MULTI-MSMS	OvCa9_classI_Rep2	2	492.28497314453125	2	492.287277	982.560001	-2.3423	-0.0011531	-1.542	-0.00075913	-3.8844	-0.0019122	492.28641322443195	149.16	1.1047	148.94	148.52	149.62	-0.22696					49	21	3	0	0	0	0.74595	1	15090	15090		14.664	1.7049	1	83456	+		29477	20008	24180	24207	32712	32712					0.06802368031083006
LFKHFVKVY	9	Unmodified	_LFKHFVKVY_					0	0	0			REV__ENSG00000172687|ENST00000683779|ZNF738	REV__ENSG00000172687|ENST00000683779|ZNF738	MULTI-MSMS	OvCa9_classI_Rep4_	4	590.8449096679688	2	590.847502	1179.68045	-2.0786	-0.0012281	-1.9589	-0.0011574	-4.0375	-0.0023855	590.846177720569	107.9	1.2329	106.02	105.74	106.97	-1.8785					50	24	3	0	0	0	0.52083	1	9864	9864		40.573	8.6178	1	82948	+		29478	21719	24181	24208	32713	32713					0.09779776024720377
LFKHFVKVY	9	Unmodified	_LFKHFVKVY_					0	0	0			REV__ENSG00000172687|ENST00000683779|ZNF738	REV__ENSG00000172687|ENST00000683779|ZNF738	MULTI-MATCH	OvCa9_classI_Rep3	3		2	590.847502	1179.68045	-0.47371	-0.00027989	-3.5927	-0.0021228	-4.0665	-0.0024027	590.8452854612517	107.29	1.3899	106.02	105.81	107.2	-1.267	0.001104	-0.0010784	NaN	40.573	53	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85618	+		29479	21719	24181	24208							0.09779776024720377
LFKHFVKVY	9	Unmodified	_LFKHFVKVY_					0	0	0			REV__ENSG00000172687|ENST00000683779|ZNF738	REV__ENSG00000172687|ENST00000683779|ZNF738	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	590.847502	1179.68045	-2.0786	-0.0012281	-1.9589	-0.0011574	-4.0375	-0.0023855	590.846177720569	107.9	1.2329	106.02	105.74	106.97	-1.8785	-0.001104	0.00085227	NaN	40.573	50	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82948	+		29480	21719	24181	24208							0.09779776024720377
LFKHTRAHQVL	11	Unmodified	_LFKHTRAHQVL_					0	0	0		OR2T12|p.N17K|1|0.2|ENSG00000177201|chr1:248295528-248295528|G/C|missense_variant	OR2T12|p.N17K|1|0.2|ENSG00000177201|chr1:248295528-248295528|G/C|missense_variant	OR2T12|p.N17K|1|0.2|ENSG00000177201|chr1:248295528-248295528|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	450.597412109375	3	450.598206	1348.77279	2.0912	0.00094228	-2.5765	-0.001161	-0.48532	-0.00021869	450.59700338359727	73.597	2.3004	71.197	70.687	72.988	-2.3999					152	43	5	0	0	0	0.54114	1	6011	6011		50.034	1.432	1	946140			29481	15455	24182	24209	32714	32714					0.1123525409091144
LFKHTRAHQVL	11	Unmodified	_LFKHTRAHQVL_					0	0	0		OR2T12|p.N17K|1|0.2|ENSG00000177201|chr1:248295528-248295528|G/C|missense_variant	OR2T12|p.N17K|1|0.2|ENSG00000177201|chr1:248295528-248295528|G/C|missense_variant	OR2T12|p.N17K|1|0.2|ENSG00000177201|chr1:248295528-248295528|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	450.5980529785156	3	450.598206	1348.77279	-0.36922	-0.00016637	-0.044439	-2.0024E-05	-0.41366	-0.0001864	450.5981883929496	75.04	3.3509	72.629	71.944	75.295	-2.4106					204	65	5	0	0	0	0.67712	1	3735	3735		37.508	0	1	1091400			29482	15455	24182	24209	32715	32715					0.1123525409091144
LFKIVSSIF	9	Unmodified	_LFKIVSSIF_					0	0	0			REV__CON__Q95M17	REV__CON__Q95M17	MULTI-MSMS	OvCa99_classI_Rep5	1	527.322265625	2	527.320786	1052.62702	0.63164	0.00033308	1.2659	0.00066753	1.8975	0.0010006	527.3213479087833	132.08	1.2707	132.08	131.62	132.89	0					52	26	3	0	0	0	0.14998	1	15358	15358		84.916	2.675	1	433590	+	+	29483	16223	24183	24210	32716	32716					0.10280978522177975
LFKKITPDAG	10	Unmodified	_LFKKITPDAG_					0	0	0		tr|A0A553SMH5|A0A553SMH5_NIACIExtracellularsolute-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_22540PE=4SV=1	tr|A0A553SMH5|A0A553SMH5_NIACIExtracellularsolute-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_22540PE=4SV=1	tr|A0A553SMH5|A0A553SMH5_NIACIExtracellularsolute-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_22540PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.3184204101562	2	545.318774	1088.623	-0.88078	-0.0004803	0.11839	6.4558E-05	-0.76239	-0.00041575	545.3187982424363	63.028	1.7371	59.553	59.291	61.028	-3.475					105	35	5	0	0	0	0.26424	1	4469	4469		85.161	0	1	2714300			29484	33834	24184	24211	32717	32717					0.08222889028456848
LFKKLLAM	8	Unmodified	_LFKKLLAM_					0	0	0		ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	ENSG00000147082|ENST00000376042|CCNB3	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.307861328125	2	482.306624	962.598695	0.55527	0.00026781	-1.0066	-0.00048549	-0.45132	-0.00021767	482.30597189609745	140.99	1.301	139.53	139.2	140.5	-1.4627					53	24	3	0	0	0	0.73579	1	13839	13839		10.185	1.3624	1	78534			29485	5329	24185	24212	32718	32718					0.11589957341243462
LFKLEKQIL	9	Unmodified	_LFKLEKQIL_					0	0	0			REV__tr|A0A7D7A5A1|A0A7D7A5A1_9CLOTPhosphoglyceratekinaseOS=ClostridiumintestinaleOX=36845GN=pgkPE=3SV=1	REV__tr|A0A7D7A5A1|A0A7D7A5A1_9CLOTPhosphoglyceratekinaseOS=ClostridiumintestinaleOX=36845GN=pgkPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	566.2973022460938	2	566.360442	1130.70633	-0.67844	-0.00038424	-0.10284	-5.8247E-05	-0.78128	-0.00044249	566.3601854797924	99.831	1.7473	98.146	97.829	99.576	-1.685					78	34	4	0	0	0	0.027304	1	6816	6816		77.318	15.21	1	287530	+		29486	32632	24186	24213	32719	32719					0.14620625476322857
LFKLFSNLP	9	Unmodified	_LFKLFSNLP_					0	0	0			REV__Harlequin-int_dup373|chr10:84170978-84171612:-|1.3789702665036672|0.2294773950638092|2.59|421.0|37|3|anti-sense	REV__Harlequin-int_dup373|chr10:84170978-84171612:-|1.3789702665036672|0.2294773950638092|2.59|421.0|37|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	539.8194580078125	2	539.81841	1077.62227	1.9384	0.0010464	0.58403	0.00031527	2.5225	0.0013617	539.818441158255	134.31	0.94995	134.31	133.86	134.81	0					30	20	3	0	0	0	0.48324	1	15617	15617		44.117	0	1	374550	+		29487	28186	24187	24214	32720	32720					0.0865609437942112
LFKLSKGKTT	10	Unmodified	_LFKLSKGKTT_					0	0	0		ENST00000529035.1_1_11:8157336-8161717:-|nuORF;nc|ENSG00000166405|Q7Z5B4-6|RIC3;nc|ENSG00000166405|Q7Z5B4-5|RIC3;ENSG00000166405|ENST00000309737|RIC3	ENST00000529035.1_1_11:8157336-8161717:-|nuORF	ENST00000529035.1_1_11:8157336-8161717:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	561.8450927734375	2	561.847699	1121.68084	-3.2197	-0.001809	-0.49496	-0.00027809	-3.7146	-0.002087	561.8472802195274	152.47	1.17	152.24	151.83	153	-0.22697					70	23	4	0	0	0	0.79213	1	15494	15494		19.997	0.89325	1	142980			29488	6676	24188	24215	32721	32721					0.12487150953893433
LFKLTFEEHI	10	Unmodified	_LFKLTFEEHI_					0	0	0		nc|ENSG00000147202|O60879-2|DIAPH2;nc|ENSG00000147202|O60879-3|DIAPH2;ENSG00000147202|ENST00000324765|DIAPH2	nc|ENSG00000147202|O60879-2|DIAPH2	nc|ENSG00000147202|O60879-2|DIAPH2	MULTI-MSMS	OvCa99_classI_Rep5	1	426.235107421875	3	426.236051	1275.68632	-0.19221	-8.1925E-05	-2.1367	-0.00091075	-2.3289	-0.00099267	426.2351007019342	35.906	0.73555	35.906	35.707	36.442	0					37	15	3	0	0	0	0.59317	1	1847	1847		42.864	6.4175	1	938480			29489	5341	24189	24216	32722	32722					0.05950829745711417
LFKMLVKV	8	Unmodified	_LFKMLVKV_					0	0	0			REV__nc|ENSG00000006125|P63010-3|AP2B1;REV__ENST00000441188.2_1_X:92478653-92479352:-|nuORF	REV__nc|ENSG00000006125|P63010-3|AP2B1	MULTI-MSMS	OvCa99_classI_Rep5	1	489.3153381347656	2	489.314449	976.614345	0.95937	0.00046943	-0.46044	-0.0002253	0.49893	0.00024413	489.3139114586736	155.23	0.55191	155.23	154.98	155.53	0					22	10	3	0	0	0	0.75915	1	18189	18189		20.482	0	1	109340	+		29490	16411;25842	24190	24217	32723	32723					0.1251024385828714
LFKMLVKV	8	Unmodified	_LFKMLVKV_					0	0	0			REV__nc|ENSG00000006125|P63010-3|AP2B1;REV__ENST00000441188.2_1_X:92478653-92479352:-|nuORF	REV__nc|ENSG00000006125|P63010-3|AP2B1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	489.314449	976.614345	0.95937	0.00046943	-0.46044	-0.0002253	0.49893	0.00024413	489.3139114586736	155.23	0.55191	155.23	154.98	155.53	0	0	0	NaN	20.482	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109340	+		29491	16411;25842	24190	24217							0.1251024385828714
LFKNIYVGLI	10	Unmodified	_LFKNIYVGLI_					0	0	0		tr|A0A553STG1|A0A553STG1_NIACIABC-2familytransporterproteinOS=NialliacirculansOX=1397GN=CEQ21_04780PE=4SV=1	tr|A0A553STG1|A0A553STG1_NIACIABC-2familytransporterproteinOS=NialliacirculansOX=1397GN=CEQ21_04780PE=4SV=1	tr|A0A553STG1|A0A553STG1_NIACIABC-2familytransporterproteinOS=NialliacirculansOX=1397GN=CEQ21_04780PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	591.3214111328125	2	590.360442	1178.70633	-1.8951	-0.0011188	-2.3706	-0.0013995	-4.2658	-0.0025184	590.358842387574	107.69	0.59724	105.81	105.33	105.93	-1.8785					14	11	2	0	0	0	0.027084	1	9779	9779		24.203	6.8378	1	35827			29492	34484	24191	24218	32724	32724					0.12412625476304129
LFKNKIEF	8	Unmodified	_LFKNKIEF_					0	0	0			REV__ENST00000265838.8_1_11:108018210-108018318:+|nuORF	REV__ENST00000265838.8_1_11:108018210-108018318:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.8204956054688	2	519.80276	1037.59097	0.012321	6.4047E-06	-2.3023	-0.0011967	-2.29	-0.0011903	519.8021620785937	132.76	0.63905	131.63	131.44	132.07	-1.1249					26	12	3	0	0	0	0.028476	1	10646	10646		24.203	4.206	1	27200	+		29493	24036	24192	24219	32725	32725					0.07367521345327077
LFKNMGALLT	10	Unmodified	_LFKNMGALLT_					0	0	0			REV__ENSG00000164163|ENST00000296577|ABCE1	REV__ENSG00000164163|ENST00000296577|ABCE1	MULTI-MSMS	OvCa99_classI_Rep5	1	554.3157348632812	2	554.315177	1106.6158	0.29235	0.00016205	-1.6664	-0.00092372	-1.3741	-0.00076166	554.3143259234861	114.4	2.7187	114.4	113.88	116.6	0					179	58	6	0	0	0	0.41408	1	13157	13157		66.429	11.653	1	35652000	+		29494	20950	24193	24220	32726	32726					0.06675833156396038
LFKRATEL	8	Unmodified	_LFKRATEL_					0	0	0			REV__ENST00000464846.5_1_2:157427687-157435520:+|nuORF	REV__ENST00000464846.5_1_2:157427687-157435520:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.2939147949219	2	489.292559	976.570566	0.42184	0.00020641	-1.1367	-0.00055619	-0.71488	-0.00034979	489.29193832315656	60.999	1.7478	57.569	57.144	58.891	-3.43					60	35	2	0	0	0	0.67872	1	4180	4180		47.657	0	1	1072400	+		29495	18222	24194	24221	32727	32727					0.08134350685497793
LFKRRGVT	8	Unmodified	_LFKRRGVT_					0	0	0			REV__ENST00000342992.10_3_2:179391348-179391462:-|nuORF	REV__ENST00000342992.10_3_2:179391348-179391462:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	489.29345703125	2	488.806168	975.597784	0.44041	0.00021528	-0.61726	-0.00030172	-0.17685	-8.6446E-05	488.80576152716037	60.518	1.5772	57.088	56.601	58.178	-3.43					42	31	2	0	0	0	0.028476	1	4166	4166		45.952	20.502	1	29127	+		29496	24657	24195	24222	32728	32728					0.10900879016560339
LFKRWSIW	8	Unmodified	_LFKRWSIW_					0	0	0		tr|A0A7D6VWH0|A0A7D6VWH0_9CLOTVanZfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08320PE=4SV=1	tr|A0A7D6VWH0|A0A7D6VWH0_9CLOTVanZfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08320PE=4SV=1	tr|A0A7D6VWH0|A0A7D6VWH0_9CLOTVanZfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08320PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.2769165039062	2	568.324194	1134.63383	2.3032	0.001309	-1.7734	-0.0010079	0.52987	0.00030114	568.322974843429	137.23	0.38586	137.23	137.01	137.4	0					12	7	2	0	0	0	0.028476	1	16021	16021		27.882	0	1	49558			29497	35248	24196	24223	32729	32729					0.07190336193411895
LFKVLESGQL	10	Unmodified	_LFKVLESGQL_					0	0	0		ENST00000471301.3_1_9:16704908-16705019:-|nuORF	ENST00000471301.3_1_9:16704908-16705019:-|nuORF	ENST00000471301.3_1_9:16704908-16705019:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	567.3330688476562	2	567.331882	1132.64921	1.8354	0.0010413	1.007	0.0005713	2.8424	0.0016126	567.3324476908409	93.201	0.54105	93.201	92.885	93.426	0					27	12	3	0	0	0	0.53807	1	10106	10106		49.536	3.5638	1	1154800			29498	12379	24197	24224	32730	32730					0.0881915819995811
LFLAFCWLL	9	Unmodified	_LFLAFCWLL_					0	0	0		L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|219|1|anti-sense	L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|219|1|anti-sense	L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|219|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.785888671875	2	563.311906	1124.60926	1.6418	0.00092484	3.2828	0.0018492	4.9246	0.0027741	563.8157003348449	124.59	0.27786	124.59	124.47	124.74	0					8	5	2	0	0	0	0.027462	1	14397	14397		29.842	3.1486	1	138600			29499	14722	24198	24225	32731	32731					0.051939399956836496
LFLAFQVVA	9	Unmodified	_LFLAFQVVA_					0	0	0		ENSG00000186889|ENST00000335390|TMEM17;ENST00000479763.5_1_2:62728346-62728628:-|nuORF	ENSG00000186889|ENST00000335390|TMEM17	ENSG00000186889|ENST00000335390|TMEM17	MULTI-MSMS	OvCa99_classI_Rep5	1	504.2991638183594	2	504.299853	1006.58515	2.2757	0.0011476	-4.2961	-0.0021665	-2.0204	-0.0010189	504.2975773350699	100.54	1.7599	100.54	100.15	101.91	0					107	41	4	0	0	0	0.42057	1	11130	11130		50.025	0	1	7361800			29500	8372	24199	24226	32732	32732					0.08212422833662458
LFLAFVIVDKI	11	Unmodified	_LFLAFVIVDKI_					0	0	0			REV__tr|A0A553SLX3|A0A553SLX3_NIACIPermeaseOS=NialliacirculansOX=1397GN=CEQ21_21445PE=3SV=1	REV__tr|A0A553SLX3|A0A553SLX3_NIACIPermeaseOS=NialliacirculansOX=1397GN=CEQ21_21445PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	639.3931884765625	2	639.397025	1276.7795	1.0635	0.00068	0.49718	0.0003179	1.5607	0.00099789	639.3968493152847	151.67	0.78494	151.67	151.09	151.88	0					24	15	3	0	0	0	0.65947	1	17764	17764		39.253	1.4413	1	87661	+		29501	30275	24200	24227	32733	32733					0.15217754198943112
LFLALFAHM	9	Unmodified	_LFLALFAHM_					0	0	0			REV__HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|26|1|sense	REV__HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|26|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.3082275390625	2	531.793881	1061.57321	1.7163	0.00091272	3.4296	0.0018238	5.1459	0.0027366	531.7954202722303	135.71	0.56323	135.71	135.36	135.92	0					14	11	2	0	0	0	0.027412	1	15789	15789		49.211	6.8727	1	43901	+		29502	28293	24201	24228	32734	32734					0.044884828188060055
LFLALNKVL	9	Unmodified	_LFLALNKVL_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2952270507812	2	515.836603	1029.65865	-1.1494	-0.00059293	-3.4858	-0.0017981	-4.6353	-0.002391	515.8347365686999	27.198	0.29884	27.198	26.992	27.291	0					8	5	2	0	0	0	0.027462	1	770	770		13.775	0	1	18820	+		29503	23199	24202	24229	32735	32735					0.14500971276129349
LFLALYSLTM	10	Oxidation (M)	_LFLALYSLTM(Oxidation (M))_		LFLALYSLTM(1)		LFLALYSLTM(53)	0	0	1		ENSG00000172640|ENST00000310248|OR10AD1	ENSG00000172640|ENST00000310248|OR10AD1	ENSG00000172640|ENST00000310248|OR10AD1	MULTI-MSMS	OvCa99_classI_Rep5	1	594.3255004882812	2	594.322668	1186.63078	1.1354	0.00067479	-2.3498	-0.0013965	-1.2144	-0.00072173	594.3210269317847	154.42	0.89758	154.42	154.17	155.07	0					42	17	4	0	0	0	0.50656	1	18121	18121		53.351	9.2347	1	234030			29504	7309	24203	24230	32736	32736		219			0.044932802337143585
LFLANFSFS	9	Unmodified	_LFLANFSFS_					0	0	0		ENST00000379951.6_1_4:109089626-109090058:-|nuORF	ENST00000379951.6_1_4:109089626-109090058:-|nuORF	ENST00000379951.6_1_4:109089626-109090058:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.290771484375	2	523.271293	1044.52803	-0.21032	-0.00011006	-3.094	-0.001619	-3.3043	-0.001729	523.7715103590231	142.28	0.52765	140.82	140.6	141.13	-1.4627					12	9	2	0	0	0	0.027441	1	13935	13935		65.803	8.3505	1	6959.5			29505	11137	24204	24231	32737	32737					0.007549555572722966
LFLAQTSIR	9	Unmodified	_LFLAQTSIR_					0	0	0		HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|31|1|sense	HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|31|1|sense	HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|31|1|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	524.8137817382812	2	524.811116	1047.60768	2.2531	0.0011824	0.096883	5.0845E-05	2.35	0.0012333	524.8110248935769	89.175	1.5386	89.175	88.843	90.382	0					76	37	4	0	0	0	0.13482	1	9508	9508		87.754	0.057861	1	9677200			29506	14435	24205	24232	32738	32738					0.08578022231267823
LFLAWGALLV	10	Unmodified	_LFLAWGALLV_					0	0	0			REV__ENSG00000025796|ENST00000369002|SEC63	REV__ENSG00000025796|ENST00000369002|SEC63	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.3026123046875	2	551.836603	1101.65865	-0.32908	-0.0001816	-1.1425	-0.00063048	-1.4716	-0.00081207	552.3371963458147	103.21	0.93892	101.01	100.73	101.67	-2.1994					29	17	3	0	0	0	0.026839	1	9386	9386		44.531	15.382	1	52188	+		29507	16569	24206	24233	32739	32739					0.11188971276123993
LFLAYLCL	8	Unmodified	_LFLAYLCL_					0	0	0			REV__ENSG00000091262|ENST00000205557|ABCC6	REV__ENSG00000091262|ENST00000205557|ABCC6	MULTI-SECPEP	OvCa9_classI_Rep3	3	478.2831726074219	2	478.269707	954.524861	-0.11949	-5.7149E-05	-3.6357	-0.0017388	-3.7552	-0.001796	478.26784491295973	81.755	1.4497	79.432	78.905	80.355	-2.3226					78	28	4	0	0	0	0.028476	1	4619	4619		67.327	20.561	1	406730	+		29508	17247	24207	24234	32740	32740					0.04577989178892494
LFLCARAID	9	Carbamidomethyl (C)	_LFLC(Carbamidomethyl (C))ARAID_	LFLC(1)ARAID		LFLC(66)ARAID		0	1	0			REV__tr|A0A553SMQ3|A0A553SMQ3_NIACIGlucose1-dehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_22875PE=3SV=1	REV__tr|A0A553SMQ3|A0A553SMQ3_NIACIGlucose1-dehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_22875PE=3SV=1	MSMS	OvCa9_classI_Rep2	2	539.7875366210938	2	539.789327	1077.5641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.208	1	94.18	93.68	94.68	-1.0281								0	0	0	0.13464	1	8550	8550		66.429	7.6473	1		+		29509	30359	24208	24235	32741	32741	365				0.028420894624559878
LFLDGLSTEN	10	Unmodified	_LFLDGLSTEN_					0	0	0		ENSG00000243725|ENST00000371281|TTC4	ENSG00000243725|ENST00000371281|TTC4	ENSG00000243725|ENST00000371281|TTC4	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.306884765625	2	554.779679	1107.5448	1.5689	0.00087039	-1.4672	-0.00081398	0.10169	5.6417E-05	554.7789816457907	93.328	0.45551	93.328	93.093	93.549	0					15	10	2	0	0	0	0.02661	1	10127	10127		58.782	21.623	1	334910			29510	9383	24209	24236	32742	32742					-0.00466588347421748
LFLDGLSTEN	10	Unmodified	_LFLDGLSTEN_					0	0	0		ENSG00000243725|ENST00000371281|TTC4	ENSG00000243725|ENST00000371281|TTC4	ENSG00000243725|ENST00000371281|TTC4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	554.779679	1107.5448	0.21248	0.00011788	-1.8288	-0.0010146	-1.6163	-0.0008967	554.778980721568	94.456	0.64827	93.356	92.958	93.606	-1.0995	0.014066	-0.00035242	NaN	58.782	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26426			29511	9383	24209	24236							-0.00466588347421748
LFLEHHGNLS	10	Unmodified	_LFLEHHGNLS_					0	0	0		ENST00000393630.7_1_12:62931442-62931897:+|nuORF	ENST00000393630.7_1_12:62931442-62931897:+|nuORF	ENST00000393630.7_1_12:62931442-62931897:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	583.8026123046875	2	583.80128	1165.58801	-1.6735	-0.00097701	3.2269	0.0018839	1.5534	0.00090686	583.8032516389169	54.354	2.9552	51.106	50.568	53.523	-3.2474					155	57	5	0	0	0	0.19075	1	3340	3340		95.815	2.6197	1	4877900			29512	11251	24210	24237	32743	32743					0.011836462205337739
LFLEKVSKD	9	Unmodified	_LFLEKVSKD_					0	0	0			REV__ENST00000453708.6_1_11:62603082-62607042:-|nuORF	REV__ENST00000453708.6_1_11:62603082-62607042:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.2952880859375	2	539.810782	1077.60701	2.1741	0.0011736	0.15178	8.1935E-05	2.3259	0.0012555	539.8107246141399	110.5	0.71323	110.5	110.22	110.94	0					38	15	3	0	0	0	0.027462	1	12510	12510		35.618	0	1	492200	+		29513	25995	24211	24238	32744	32744					0.07131182791590618
LFLELCFKI	9	Unmodified	_LFLELCFKI_					0	0	0		nc|ENSG00000197989|Q9BXW3|SNHG12	nc|ENSG00000197989|Q9BXW3|SNHG12	nc|ENSG00000197989|Q9BXW3|SNHG12	MULTI-MSMS	OvCa9_classI_Rep3	3	563.3182983398438	2	563.322471	1124.63039	-6.0709	-0.0034199	-0.31249	-0.00017603	-6.3834	-0.0035959	563.322073230946	155.76	0.93549	154.68	154.4	155.34	-1.073					61	26	3	0	0	0	0.5811	1	13402	13402		34.173	2.6427	1	103840			29514	15253	24212	24239	32745	32745					0.07305905304542648
LFLELHFAVGM	11	Unmodified	_LFLELHFAVGM_					0	0	0			REV__ENSG00000159596|ENST00000372025|TMEM69	REV__ENSG00000159596|ENST00000372025|TMEM69	MULTI-MSMS	OvCa9_classI_Rep2	2	638.8432006835938	2	638.841559	1275.66857	-1.9958	-0.001275	4.4569	0.0028472	2.4611	0.0015723	638.8443025550549	101.16	1.4869	100.4	99.973	101.46	-0.76401					90	29	4	0	0	0	0.40225	3	9270	9270;9276;9295		60.972	11.53	1	623200	+		29515	20620	24213	24240	32746;32747;32748	32746					0.04175791219176972
LFLELHFAVGM	11	Unmodified	_LFLELHFAVGM_					0	0	0			REV__ENSG00000159596|ENST00000372025|TMEM69	REV__ENSG00000159596|ENST00000372025|TMEM69	MULTI-MSMS	OvCa9_classI_Rep3	3	638.8433227539062	2	638.841559	1275.66857	-0.72166	-0.00046103	3.6914	0.0023582	2.9698	0.0018972	638.8438331848862	101.97	1.8306	100.44	99.845	101.68	-1.5211					95	34	5	0	0	0	0.64273	1	6990	6990		40.778	9.1439	1	808980	+		29516	20620	24213	24240	32749	32749					0.04175791219176972
LFLELHFAVGM	11	Unmodified	_LFLELHFAVGM_					0	0	0			REV__ENSG00000159596|ENST00000372025|TMEM69	REV__ENSG00000159596|ENST00000372025|TMEM69	MULTI-MSMS	OvCa9_classI_Rep4_	4	638.8432006835938	2	638.841559	1275.66857	0.20241	0.00012931	2.7854	0.0017794	2.9878	0.0019087	638.8432805589141	102.59	1.7814	100.39	99.884	101.67	-2.1994					95	33	5	0	0	0	0.54764	2	9238	9238;9249		49.442	4.4193	1	760420	+		29517	20620	24213	24240	32750;32751	32750					0.04175791219176972
LFLELHFAVGM	11	Unmodified	_LFLELHFAVGM_					0	0	0			REV__ENSG00000159596|ENST00000372025|TMEM69	REV__ENSG00000159596|ENST00000372025|TMEM69	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	638.841559	1275.66857	0.20241	0.00012931	2.7854	0.0017794	2.9878	0.0019087	638.8432805589141	102.59	1.7814	100.39	99.884	101.67	-2.1994	-0.017796	-0.00095282	NaN	60.972	95	33	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	760420	+		29518	20620	24213	24240							0.04175791219176972
LFLFCFVL	8	Unmodified	_LFLFCFVL_					0	0	0		nc|ENSG00000114529|Q5BVD1-3|TTMP	nc|ENSG00000114529|Q5BVD1-3|TTMP	nc|ENSG00000114529|Q5BVD1-3|TTMP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.794921875	2	501.280075	1000.5456	0.1513	7.5843E-05	-2.8545	-0.0014309	-2.7032	-0.0013551	501.27870595620675	109.85	0.94826	108.25	108.02	108.96	-1.6011					23	17	2	0	0	0	0.028476	1	10168	10168		54.895	0	1	46031			29519	14971	24214	24241	32752	32752					0.04534579558583118
LFLFCSFLF	9	Unmodified	_LFLFCSFLF_					0	0	0			REV__ENSG00000256574|ENST00000553795|OR13A1	REV__ENSG00000256574|ENST00000553795|OR13A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.8067626953125	2	568.796089	1135.57763	1.9801	0.0011262	-2.3197	-0.0013194	-0.33961	-0.00019317	568.793512977174	136.38	0.23396	136.38	136.21	136.44	0					6	4	2	0	0	0	0.02721	1	15895	15895		97.473	9.7184	1	24536	+		29520	23537	24215	24242	32753	32753					0.015259472417255893
LFLFFLLF	8	Unmodified	_LFLFFLLF_					0	0	0		ENST00000531709.6_1_11:62566311-62566866:-|nuORF	REV__ENST00000563623.5_1_16:2339371-2378589:-|nuORF	REV__ENST00000563623.5_1_16:2339371-2378589:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.8064575195312	2	530.317515	1058.62048	-1.1765	-0.0006239	3.2728	0.0017356	2.0964	0.0011117	530.3189590835835	94.272	0.63577	91.803	91.524	92.16	-2.4685					17	12	2	0	0	0	0.028476	1	8242	8242		16.705	0	1	20058			29521	21325	24216	24243	32754	32754					0.093510853614589
LFLFFLLF	8	Unmodified	_LFLFFLLF_					0	0	0		ENST00000531709.6_1_11:62566311-62566866:-|nuORF	REV__ENST00000563623.5_1_16:2339371-2378589:-|nuORF	REV__ENST00000563623.5_1_16:2339371-2378589:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.317515	1058.62048	-0.33956	-0.00018007	3.4332	0.0018207	3.0936	0.0016406	530.3193139529035	92.639	0.82451	91.471	91.129	91.953	-1.168	-0.166	5.9005E-05	NaN	16.705	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17757			29522	21325	24216	24243							0.093510853614589
LFLFGFLN	8	Unmodified	_LFLFGFLN_					0	0	0		nc|ENSG00000179709|Q86W28-2|NLRP8;ENSG00000179709|ENST00000291971|NLRP8	nc|ENSG00000179709|Q86W28-2|NLRP8	nc|ENSG00000179709|Q86W28-2|NLRP8	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.760009765625	2	485.773471	969.53239	0.1013	4.9209E-05	2.6893	0.0013064	2.7906	0.0013556	485.77523096559054	62.682	0.28161	62.682	62.46	62.741	0					8	6	2	0	0	0	0.028476	1	5590	5590		65.897	0	1	85302			29523	7838	24217	24244	32755	32755					0.04640464770864128
LFLFIMLVP	9	Unmodified	_LFLFIMLVP_					0	0	0		tr|A0A7D6ZY06|A0A7D6ZY06_9CLOTTypeIIsecretionsystemFfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14585PE=3SV=1	tr|A0A7D6ZY06|A0A7D6ZY06_9CLOTTypeIIsecretionsystemFfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14585PE=3SV=1	tr|A0A7D6ZY06|A0A7D6ZY06_9CLOTTypeIIsecretionsystemFfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14585PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.8006591796875	2	546.829932	1091.64531	-1.2816	-0.00070084	0.35148	0.0001922	-0.93016	-0.00050864	546.8301453956324	34.609	0.3735	34.609	34.444	34.818	0					14	7	3	0	0	0	0.027462	1	1662	1662		14.664	6.9738	1	233760			29524	35904	24218	24245	32756	32756					0.10315397172553276
LFLFLIIGTN	10	Unmodified	_LFLFLIIGTN_					0	0	0			REV__ENSG00000188338|ENST00000614032|SLC38A3	REV__ENSG00000188338|ENST00000614032|SLC38A3	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.2582397460938	2	575.847167	1149.67978	1.2829	0.00073878	0.90837	0.00052308	2.1913	0.0012619	575.8475836600219	138.34	0.96156	138.34	138.06	139.03	0					39	19	3	0	0	0	0.026849	1	16113	16113		32.812	0	1	170850	+		29525	22708	24219	24246	32757	32757					0.11092936585032476
LFLFLLHR	8	Unmodified	_LFLFLLHR_					0	0	0		ENSG00000139629|ENST00000356317|GALNT6;GALNT6|p.C393Lfs*13|1|0.1|ENSG00000139629|chr12:51359322-51359322|C/-|frameshift_variant	ENSG00000139629|ENST00000356317|GALNT6	ENSG00000139629|ENST00000356317|GALNT6	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.333740234375	2	529.829112	1057.64367	3.1683	0.0016787	1.8087	0.00095832	4.977	0.002637	529.8320961796451	131.94	1.8053	130.44	130.12	131.93	-1.5014					94	35	5	0	0	0	0.73288	1	12697	12697		35.201	0	1	145640			29526	4791	24220	24247	32758	32758					0.11715524198802996
LFLFLLWFFPG	11	Unmodified	_LFLFLLWFFPG_					0	0	0		ENST00000395290.6_1_11:47489658-47490021:-|nuORF	ENST00000395290.6_1_11:47489658-47490021:-|nuORF	ENST00000395290.6_1_11:47489658-47490021:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	467.2494201660156	3	467.265282	1398.77402	0.14668	6.8541E-05	1.5449	0.00072188	1.6916	0.00079042	467.266170475637	76.097	0.72003	73.158	72.692	73.412	-2.9389					22	14	2	0	0	0	0.026296	1	6050	6050		15.333	5.2292	1	14807			29527	11285	24221	24248	32759	32759					0.09058075407119759
LFLGKHKTT	9	Unmodified	_LFLGKHKTT_					0	0	0			REV__L1M4b_dup409|chr2:99315365-99316132:-|1.0427257755468466|0.2824116377342518|1.88|429.0|44|2|anti-sense	REV__L1M4b_dup409|chr2:99315365-99316132:-|1.0427257755468466|0.2824116377342518|1.88|429.0|44|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	522.811767578125	2	522.813659	1043.61277	-5.1563	-0.0026958	0.99532	0.00052037	-4.161	-0.0021754	522.8140763744603	152.4	1.0707	151.42	151.09	152.16	-0.97299					54	21	4	0	0	0	0.6653	1	13009	13009		24.203	1.1603	1	172960	+		29528	28364	24222	24249	32760	32760					0.09270326093883341
LFLGRAPPPR	10	Unmodified	_LFLGRAPPPR_					0	0	0		ENSG00000182272|ENST00000329962|B4GALNT4	ENSG00000182272|ENST00000329962|B4GALNT4	ENSG00000182272|ENST00000329962|B4GALNT4	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.34228515625	2	562.340375	1122.6662	1.2434	0.00069921	4.1981	0.0023608	5.4415	0.00306	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.67931	1	13925	13925		32.812	7.2384	1	683710			29529	7989	24223	24250	32761	32761					0.10977123596398997
LFLGSLTSRL	10	Unmodified	_LFLGSLTSRL_					0	0	0		nc|ENSG00000105197|Q3ZCQ8-3|TIMM50;ENSG00000105197|ENST00000607714|TIMM50;nc|ENSG00000105197|Q3ZCQ8-2|TIMM50	nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	nc|ENSG00000105197|Q3ZCQ8-3|TIMM50	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.83056640625	2	553.832049	1105.64954	0.13277	7.3535E-05	-3.4573	-0.0019148	-3.3245	-0.0018412	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.58067	1	14250	14250		44.377	5.1244	1	400120			29530	2428	24224	24251	32762	32762					0.10094577919790026
LFLHEPSPIL	10	Unmodified	_LFLHEPSPIL_					0	0	0			REV__ENST00000467112.5_1_21:45213150-45223652:+|nuORF	REV__ENST00000467112.5_1_21:45213150-45223652:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	583.33642578125	2	583.334424	1164.6543	0.53924	0.00031456	1.4516	0.00084675	1.9908	0.0011613	583.3350523286123	152.76	2.0618	152.76	152.26	154.32	0					93	45	4	0	0	0	0.35697	1	17925	17925		73.975	13.681	1	306560	+		29531	26196	24225	24252	32763	32763					0.0785546206257095
LFLISGYNL	9	Unmodified	_LFLISGYNL_					0	0	0		ENSG00000110887|ENST00000228476|DAO	ENSG00000110887|ENST00000228476|DAO	ENSG00000110887|ENST00000228476|DAO	MULTI-MSMS	OvCa9_classI_Rep2	2	520.2929077148438	2	520.294768	1038.57498	-0.96897	-0.00050415	-3.2495	-0.0016907	-4.2185	-0.0021949	520.2929878067442	117.73	1.1913	117.58	117.19	118.38	-0.14754					43	23	2	0	0	0	0.31747	1	11279	11279		60.972	4.2509	1	211520			29532	2800	24226	24253	32764	32764					0.05723815108422059
LFLISGYNL	9	Unmodified	_LFLISGYNL_					0	0	0		ENSG00000110887|ENST00000228476|DAO	ENSG00000110887|ENST00000228476|DAO	ENSG00000110887|ENST00000228476|DAO	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.2921142578125	2	520.294768	1038.57498	-1.5786	-0.00082134	-2.8009	-0.0014573	-4.3795	-0.0022786	520.2931843506016	118.68	1.1956	117.34	116.94	118.14	-1.3444					56	22	4	0	0	0	0.38529	1	11120	11120		53.351	3.9099	1	338660			29533	2800	24226	24253	32765	32765					0.05723815108422059
LFLKTKICQ	9	Unmodified	_LFLKTKICQ_					0	0	0		nc|ENSG00000205111|Q5MAI5|CDKL4	nc|ENSG00000205111|Q5MAI5|CDKL4	nc|ENSG00000205111|Q5MAI5|CDKL4	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.3268432617188	2	547.325545	1092.63654	-1.4276	-0.00078134	4.2654	0.0023345	2.8378	0.0015532	547.3278680090106	95.35	1.9184	92.881	92.31	94.229	-2.4685					103	37	4	0	0	0	0.14998	1	8363	8363		84.916	8.1414	1	1430500			29534	15275	24227	24254	32766	32766					0.0939242353604186
LFLLILPAT	9	Unmodified	_LFLLILPAT_					0	0	0		ENST00000581412.1_1_17:72596059-72600281:+|nuORF	ENST00000581412.1_1_17:72596059-72600281:+|nuORF	ENST00000581412.1_1_17:72596059-72600281:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.8254089355469	2	500.825704	999.636855	-0.70231	-0.00035174	-2.6327	-0.0013185	-3.3351	-0.0016703	500.82426175027206	62.48	3.824	59.023	58.382	62.206	-3.4577					194	78	4	0	0	0	0.39645	1	4394	4394		52.299	0	1	1001200			29535	13996	24228	24255	32767	32767					0.13702166527559712
LFLLITAPLLI	11	Unmodified	_LFLLITAPLLI_					0	0	0			REV__ENSG00000262543|ENST00000573100|SMIM28	REV__ENSG00000262543|ENST00000573100|SMIM28	MULTI-MSMS	OvCa9_classI_Rep2	2	409.60772705078125	3	409.608937	1225.80498	0.6889	0.00028218	-3.0246	-0.0012389	-2.3357	-0.00095672	409.60766459120623	104.29	12.102	103.72	103.28	115.38	-0.57639					699	244	5	0	0	0	0.50761	8	9633	9633;9713;9828;9847;9922;9954;9991;10117		53.089	14.358	1	1628000	+		29536	23573	24229	24256	32768;32769;32770;32771;32772;32773;32774;32775	32768					0.2011122872136184
LFLLITAPLLI	11	Unmodified	_LFLLITAPLLI_					0	0	0			REV__ENSG00000262543|ENST00000573100|SMIM28	REV__ENSG00000262543|ENST00000573100|SMIM28	MULTI-MSMS	OvCa9_classI_Rep3	3	409.607666015625	3	409.608937	1225.80498	1.1396	0.00046679	-3.5153	-0.0014399	-2.3757	-0.00097312	409.6074659919173	107.95	5.8573	106.76	106.27	112.13	-1.1978					409	114	4	0	0	0	0.43993	11	7800	7685;7709;7715;7728;7771;7800;7868;7966;7978;7990;7997		58.23	13.208	1	1037400	+		29537	23573	24229	24256	32776;32777;32778;32779;32780;32781;32782;32783;32784;32785;32786	32781					0.2011122872136184
LFLLITAPLLI	11	Unmodified	_LFLLITAPLLI_					0	0	0			REV__ENSG00000262543|ENST00000573100|SMIM28	REV__ENSG00000262543|ENST00000573100|SMIM28	MULTI-MSMS	OvCa9_classI_Rep4_	4	409.6080017089844	3	409.608937	1225.80498	0.55096	0.00022568	-3.0159	-0.0012353	-2.4649	-0.0010097	409.60762934156605	108.64	8.1164	106.92	106.42	114.53	-1.7256					461	158	5	0	0	0	0.34051	8	10042	9921;10029;10042;10174;10208;10244;10256;10344		65.465	19.987	1	863570	+		29538	23573	24229	24256	32787;32788;32789;32790;32791;32792;32793;32794	32789					0.2011122872136184
LFLLLLIMV	9	Unmodified	_LFLLLLIMV_					0	0	0			REV__ENSG00000249581|ENST00000511148|CLRN2	REV__ENSG00000249581|ENST00000511148|CLRN2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.807373046875	2	537.853407	1073.69226	-1.1176	-0.00060109	4.4505	0.0023937	3.333	0.0017926	537.8556362975903	98.909	1.3382	96.584	96.279	97.617	-2.3253					42	25	3	0	0	0	0.027412	1	8788	8788		49.211	10.189	1	52421	+		29539	23488	24230	24257	32795	32795					0.15836256723696351
LFLLQKGLF	9	Unmodified	_LFLLQKGLF_					0	0	0			REV__ENST00000405166.1_1_6:111368073-111368568:-|nuORF	REV__ENST00000405166.1_1_6:111368073-111368568:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	539.8321533203125	2	539.836603	1077.65865	-3.4548	-0.001865	-4.4191	-0.0023856	-7.8739	-0.0042506	539.8341906594819	150.18	1.502	148.75	148.37	149.88	-1.4344					84	33	4	0	0	0	0.63108	1	14878	14878		28.254	0.37203	1	222660	+		29540	25438	24231	24258	32796	32796					0.12292971276133358
LFLLSIVAMS	10	Unmodified	_LFLLSIVAMS_					0	0	0			REV__nc|ENSG00000198885|Q6GPH6-2|ITPRIPL1	REV__nc|ENSG00000198885|Q6GPH6-2|ITPRIPL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.7742919921875	2	547.319928	1092.6253	0.75769	0.0004147	-1.552	-0.00084944	-0.79431	-0.00043474	547.3188889743128	139.81	1.0132	138.32	138.15	139.16	-1.4952					25	19	2	0	0	0	0.027056	1	13641	13641		20.947	0.95016	1	13535	+		29541	23085	24232	24259	32797	32797					0.0826960144190707
LFLLTNYLI	9	Unmodified	_LFLLTNYLI_					0	0	0			REV__ENSG00000120942|ENST00000376810|UBIAD1	REV__ENSG00000120942|ENST00000376810|UBIAD1	MULTI-MSMS	OvCa99_classI_Rep5	1	555.3353271484375	2	555.333893	1108.65323	1.5001	0.00083308	0.29144	0.00016185	1.7916	0.00099492	555.3339725612706	146.69	1.5122	146.69	146.28	147.79	0					70	30	5	0	0	0	0.14998	1	17156	17156		84.916	7.5979	1	320180	+		29542	18523	24233	24260	32798	32798					0.10325247693640449
LFLMHLLSF	9	Oxidation (M)	_LFLM(Oxidation (M))HLLSF_		LFLM(1)HLLSF		LFLM(92)HLLSF	0	0	1			REV__ENSG00000065060|ENST00000192788|BLTP3A	REV__ENSG00000065060|ENST00000192788|BLTP3A	MULTI-MSMS	OvCa99_classI_Rep5	1	568.8067626953125	2	568.81227	1135.60999	1.9032	0.0010826	-2.3826	-0.0013553	-0.47945	-0.00027272	568.8107808992512	136.08	1.8122	136.08	135.78	137.59	0					81	37	4	0	0	0	0.11842	1	15895	15895		92.191	12.251	1	1581000	+		29543	16783	24234	24261	32799	32799		398			0.04760734644719378
LFLPALKER	9	Unmodified	_LFLPALKER_					0	0	0		nc|ENSG00000138767|Q96LI5-2|CNOT6L;ENSG00000138767|ENST00000504123|CNOT6L	nc|ENSG00000138767|Q96LI5-2|CNOT6L	nc|ENSG00000138767|Q96LI5-2|CNOT6L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.8495483398438	2	543.837134	1085.65972	-2.2011	-0.001197	2.1958	0.0011942	-0.0052145	-2.8358E-06	543.8375895776308	126.87	0.74516	125.44	125.24	125.99	-1.4357					19	14	2	0	0	0	0.027462	1	12071	12071		38.806	0	1	16030			29544	4725	24235	24262	32800	32800					0.12031185645037112
LFLPFGCELF	10	Unmodified	_LFLPFGCELF_					0	0	0			REV__ENST00000373178.4_1_1:36558999-36559104:+|nuORF	REV__ENST00000373178.4_1_1:36558999-36559104:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	593.3070678710938	2	593.304278	1184.594	0.98227	0.00058278	3.9509	0.0023441	4.9332	0.0029269	593.3064937099855	153.02	5.598	153.02	152.55	158.15	0					237	114	5	0	0	0	0.56767	1	18170	18170		45.952	1.4209	1	2333200	+		29545	25028	24236	24263	32801	32801					0.009090284078183686
LFLPLQNIK	9	Unmodified	_LFLPLQNIK_					0	0	0			REV__nc|ENSG00000130023|Q5T6L9-4|ERMARD	REV__nc|ENSG00000130023|Q5T6L9-4|ERMARD	MULTI-MSMS	OvCa99_classI_Rep5	1	543.3407592773438	2	543.33951	1084.66447	1.2159	0.00066066	0.83208	0.0004521	2.048	0.0011128	543.3398505063399	146.15	1.7738	146.15	145.78	147.55	0					91	35	4	0	0	0	0.22961	1	17078	17078		71.296	4.8664	1	1432900	+		29546	18915	24237	24264	32802	32802					0.12552069787761866
LFLPSRQP	8	Unmodified	_LFLPSRQP_					0	0	0			REV__ENST00000539267.5_1_1:205554025-205568301:+|nuORF	REV__ENST00000539267.5_1_1:205554025-205568301:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.2990417480469	2	479.279452	956.544351	-0.89024	-0.00042667	4.1082	0.001969	3.2179	0.0015423	479.28138435219944	99.986	1.0731	97.661	97.366	98.439	-2.3253					36	20	2	0	0	0	0.028476	1	8910	8910		55.504	22.011	1	150170	+		29547	26365	24238	24265	32803	32803					0.0643408151404401
LFLPSRQP	8	Unmodified	_LFLPSRQP_					0	0	0			REV__ENST00000539267.5_1_1:205554025-205568301:+|nuORF	REV__ENST00000539267.5_1_1:205554025-205568301:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	479.279452	956.544351	-0.62625	-0.00030015	3.6215	0.0017357	2.9952	0.0014356	479.281107202398	98.541	0.94273	97.648	97.313	98.256	-0.89305	-0.022464	0.00016875	NaN	55.504	33	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134430	+		29548	26365	24238	24265							0.0643408151404401
LFLPSRQP	8	Unmodified	_LFLPSRQP_					0	0	0			REV__ENST00000539267.5_1_1:205554025-205568301:+|nuORF	REV__ENST00000539267.5_1_1:205554025-205568301:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	479.279452	956.544351	0.11367	5.4478E-05	2.8793	0.00138	2.993	0.0014345	479.28077576621627	99.387	0.87405	97.702	97.423	98.297	-1.685	0.031797	-0.00054265	NaN	55.504	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134910	+		29549	26365	24238	24265							0.0643408151404401
LFLPTAVLN	9	Unmodified	_LFLPTAVLN_					0	0	0			REV__C5|p.A1171Vfs*12|1|0.06|ENSG00000106804|chr9:120980231-120980232|-/GCACTCCAGCCTGGGTGACAGAGCGAGAACC|frameshift_variant	REV__C5|p.A1171Vfs*12|1|0.06|ENSG00000106804|chr9:120980231-120980232|-/GCACTCCAGCCTGGGTGACAGAGCGAGAACC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.768310546875	2	494.29731	986.580068	1.399	0.00069152	0.92981	0.0004596	2.3288	0.0011511	494.2976999020521	113.88	0.54075	113.88	113.61	114.15	0					22	11	3	0	0	0	0.027462	1	12977	12977		47.916	0	1	244950	+		29550	15719	24239	24266	32804	32804					0.08624118971044936
LFLPYSHFL	9	Unmodified	_LFLPYSHFL_					0	0	0		ENSG00000115486|ENST00000233838|GGCX;nc|ENSG00000115486|P38435-2|GGCX	ENSG00000115486|ENST00000233838|GGCX	ENSG00000115486|ENST00000233838|GGCX	MULTI-MSMS	OvCa99_classI_Rep5	1	568.8123168945312	2	568.810585	1135.60662	1.9032	0.0010826	0.58039	0.00033013	2.4836	0.0014127	568.8107808992512	136.08	1.8122	136.08	135.78	137.59	0					81	37	4	0	0	0	0.071436	1	15869	15869		106.42	24.11	1	1581000			29551	3102	24240	24267	32805	32805					0.04423807862372087
LFLQDKLSI	9	Unmodified	_LFLQDKLSI_					0	0	0		ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	MULTI-MSMS	OvCa99_classI_Rep5	1	539.3267822265625	2	538.82115	1075.62775	0.98933	0.00053307	1.023	0.00055119	2.0123	0.0010843	539.3232025782999	156.41	3.6435	156.41	155.73	159.38	0					185	73	4	0	0	0	0.094616	1	18315	18315		98.629	0	1	206920			29552	1452	24241	24268	32806	32806					0.09295773171243127
LFLQICLFSK	10	Unmodified	_LFLQICLFSK_					0	0	0		ENST00000603864.5_1_12:51663070-51663118:-|nuORF	ENST00000603864.5_1_12:51663070-51663118:-|nuORF	ENST00000603864.5_1_12:51663070-51663118:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	606.8444213867188	2	606.346477	1210.6784	2.2599	0.0013703	3.6247	0.0021978	5.8846	0.0035681	606.3483858675194	100.22	0.50551	100.22	99.939	100.44	0					25	11	4	0	0	0	0.026931	1	11135	11135		30.318	0	1	1736800			29553	14257	24242	24269	32807	32807					0.08148979224552022
LFLRANSL	8	Unmodified	_LFLRANSL_					0	0	0			REV__ENST00000531896.5_1_8:145541583-145550314:-|nuORF	REV__ENST00000531896.5_1_8:145541583-145550314:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	467.2802429199219	2	467.279452	932.544351	-0.47932	-0.00022397	0.43644	0.00020394	-0.042879	-2.0036E-05	467.2795250703273	97.402	0.74762	95.642	95.362	96.11	-1.7595					48	14	4	0	0	0	0.61758	1	6457	6457		60.294	0	1	638550	+		29554	22468	24243	24270	32808	32808					0.07538081514042005
LFLRELAKV	9	Unmodified	_LFLRELAKV_					0	0	0		PYGL|p.V530L|1|0.09|ENSG00000100504|chr14:50913061-50913061|C/G|missense_variant	PYGL|p.V530L|1|0.09|ENSG00000100504|chr14:50913061-50913061|C/G|missense_variant	PYGL|p.V530L|1|0.09|ENSG00000100504|chr14:50913061-50913061|C/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.8115844726562	2	544.844959	1087.67537	2.0345	0.0011085	-0.77248	-0.00042088	1.262	0.00068761	544.8443927781586	136.94	0.38361	136.94	136.73	137.11	0					10	7	2	0	0	0	0.027343	1	15975	15975		79.451	20.669	1	29078			29555	15534	24244	24271	32809	32809					0.13503472162074104
LFLRNYLL	8	Unmodified	_LFLRNYLL_					0	0	0		ENSG00000069329|ENST00000299138|VPS35;ENST00000568784.6_1_16:46694386-46722246:-|nuORF;ENST00000563400.1_1_16:34326999-34329423:+|nuORF;ENST00000569950.1_1_16:46710493-46715410:-|nuORF	ENSG00000069329|ENST00000299138|VPS35	ENSG00000069329|ENST00000299138|VPS35	MULTI-MSMS	OvCa99_classI_Rep5	1	526.3163452148438	2	526.318577	1050.6226	1.4605	0.00076869	0.36383	0.00019149	1.8243	0.00096018	526.3184223292147	135.73	0.93964	135.73	135.17	136.11	0					43	19	3	0	0	0	0.60486	1	15818	15818		62.978	7.4742	1	192680			29556	1407	24245	24272	32810	32810					0.09931514099275773
LFLSDMIKL	9	Unmodified	_LFLSDMIKL_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA;NBEA|p.N1381Ffs*28|1|0.43|ENSG00000172915|chr13:35164414-35164430|CATAACACAATTCACCT/-|frameshift_variant	ENSG00000172915|ENST00000379939|NBEA	ENSG00000172915|ENST00000379939|NBEA	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.30859375	2	540.312103	1078.60965	-2.0627	-0.0011145	-4.4327	-0.002395	-6.4954	-0.0035095	540.3096376945349	119.42	3.6472	118.08	117.68	121.33	-1.3444					173	70	5	0	0	0	0.13482	2	11294	11294;11320		87.754	18.967	1	472280			29557	7329	24246	24273	32811;32812	32811					0.07349314924863393
LFLSEGLKL	9	Unmodified	_LFLSEGLKL_					0	0	0		nc|ENSG00000197249|P01009-3|SERPINA1;nc|ENSG00000197249|P01009-2|SERPINA1;ENSG00000197249|ENST00000393087|SERPINA1	nc|ENSG00000197249|P01009-3|SERPINA1	nc|ENSG00000197249|P01009-3|SERPINA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.30926513671875	2	510.310418	1018.60628	-2.5279	-0.00129	2.5124	0.0012821	-0.015515	-7.9176E-06	510.31151958350677	126.07	1.2741	124.65	124.34	125.61	-1.4143					54	25	4	0	0	0	0.46377	1	12001	12001		45.952	1.8352	1	109760			29558	8693	24247	24274	32813	32813					0.09772388142516775
LFLSFILRA	9	Unmodified	_LFLSFILRA_					0	0	0		nc|ENSG00000106018|P41587-2|VIPR2;ENSG00000106018|ENST00000262178|VIPR2	nc|ENSG00000106018|P41587-2|VIPR2	nc|ENSG00000106018|P41587-2|VIPR2	MULTI-MSMS	OvCa9_classI_Rep2	2	540.333984375	2	540.334227	1078.6539	0.19064	0.00010301	-0.21146	-0.00011426	-0.020819	-1.1249E-05	540.3339476899532	130.28	2.8117	130.05	129.46	132.28	-0.22696					132	56	4	0	0	0	0.38529	1	12820	12820		53.351	0	1	240030			29559	2524	24248	24275	32814	32814					0.11772087133385867
LFLSKKELQ	9	Unmodified	_LFLSKKELQ_					0	0	0		NLRP6|p.P486Q|1|0.3|ENSG00000174885|chr11:281191-281191|C/A|missense_variant	NLRP6|p.P486Q|1|0.3|ENSG00000174885|chr11:281191-281191|C/A|missense_variant	NLRP6|p.P486Q|1|0.3|ENSG00000174885|chr11:281191-281191|C/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	553.3319702148438	2	553.334424	1104.6543	-5.4992	-0.0030429	1.7092	0.00094578	-3.7899	-0.0020971	553.3351787520976	152.55	1.4112	151.58	151.19	152.61	-0.97301					72	28	4	0	0	0	0.65476	1	13053	13053		25.45	0.93098	1	153020			29560	15433	24249	24276	32815	32815					0.10615462062582992
LFLSKQEK	8	Unmodified	_LFLSKQEK_					0	0	0		tr|A0A553SGL7|A0A553SGL7_NIACIDUF5668domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11065PE=4SV=1	tr|A0A553SGL7|A0A553SGL7_NIACIDUF5668domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11065PE=4SV=1	tr|A0A553SGL7|A0A553SGL7_NIACIDUF5668domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11065PE=4SV=1	MSMS	OvCa9_classI_Rep3	3	496.793212890625	2	496.792392	991.570232	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.93	1	117.9	117.4	118.4	-1.0271								0	0	0	0.30129	1	8996	8996		50.025	2.1089	1				29561	33174	24250	24277	32816	32816					0.07410930965670559
LFLSKTKKN	9	Unmodified	_LFLSKTKKN_					0	0	0			REV__ENST00000359450.6_1_17:27404640-27404928:-|nuORF	REV__ENST00000359450.6_1_17:27404640-27404928:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	539.832275390625	2	539.834591	1077.65463	-3.4548	-0.001865	-0.69323	-0.00037423	-4.148	-0.0022393	539.8341906594819	150.18	1.502	148.75	148.37	149.88	-1.4344					84	33	4	0	0	0	0.59983	1	14817	14817		31.955	3.7006	1	222660	+		29562	24813	24251	24278	32817	32817					0.11890881782437646
LFLSKVINI	9	Unmodified	_LFLSKVINI_					0	0	0			REV__ENSG00000204687|ENST00000377127|MAS1L	REV__ENSG00000204687|ENST00000377127|MAS1L	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.27197265625	2	523.83406	1045.65357	-0.91912	-0.00048147	-1.9129	-0.001002	-2.832	-0.0014835	523.8330005198106	120.61	0.69064	120.42	120.11	120.8	-0.19718					17	13	2	0	0	0	0.027462	1	11635	11635		45.952	12.436	1	13518	+		29563	23179	24252	24279	32818	32818					0.1325666741349778
LFLSKVINI	9	Unmodified	_LFLSKVINI_					0	0	0			REV__ENSG00000204687|ENST00000377127|MAS1L	REV__ENSG00000204687|ENST00000377127|MAS1L	MULTI-MATCH	OvCa9_classI_Rep3	3		2	523.83406	1045.65357	1.0071	0.00052755	-4.0011	-0.0020959	-2.994	-0.0015684	523.8315578494083	121.57	0.52348	120.54	120.27	120.8	-1.0286	0.063358	-0.0016272	NaN	45.952	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15699	+		29564	23179	24252	24279							0.1325666741349778
LFLSMLAA	8	Unmodified	_LFLSMLAA_					0	0	0		nc|ENSG00000262980|Q8NGH6|OR52L2P;ENSG00000183313|ENST00000332249|OR52L1	nc|ENSG00000262980|Q8NGH6|OR52L2P	nc|ENSG00000262980|Q8NGH6|OR52L2P	MULTI-MSMS	OvCa9_classI_Rep4_	4	433.2494812011719	2	433.246232	864.477911	0.47012	0.00020368	4.3952	0.0019042	4.8653	0.0021079	433.2479071902028	51.972	1.7086	48.798	48.072	49.781	-3.1734					101	33	5	0	0	0	0.68312	1	3077	3077		46.766	4.292	1	504890			29565	8065	24253	24280	32819	32819					0.040251296277801885
LFLSSVAFPV	10	Unmodified	_LFLSSVAFPV_					0	0	0		ENST00000315970.11_1_12:58114914-58114971:+|nuORF	ENST00000315970.11_1_12:58114914-58114971:+|nuORF	ENST00000315970.11_1_12:58114914-58114971:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3088989257812	2	540.310418	1078.60628	-2.0627	-0.0011145	-1.3134	-0.00070964	-3.3761	-0.0018241	540.3096376945349	119.42	3.6472	118.08	117.68	121.33	-1.3444					173	70	5	0	0	0	0.35697	1	11306	11306		73.975	2.5968	1	472280			29566	10337	24254	24281	32820	32820					0.07012388142516102
LFLTKPYLI	9	Unmodified	_LFLTKPYLI_					0	0	0			REV__nc|ENSG00000138814|Q08209-5|PPP3CA	REV__nc|ENSG00000138814|Q08209-5|PPP3CA	MULTI-MSMS	OvCa99_classI_Rep5	1	554.3458862304688	2	554.344261	1106.67397	1.9613	0.0010872	1.2436	0.00068939	3.2049	0.0017766	554.3445600732562	134.41	1.7792	134.41	133.86	135.64	0					101	38	5	0	0	0	0.2077	1	15644	15644		75.043	0.78827	1	1289500	+		29567	19579	24255	24282	32821	32821					0.12489838073315696
LFLTRKYM	8	Unmodified	_LFLTRKYM_					0	0	0			REV__tr|A0A553SLT5|A0A553SLT5_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_21120PE=3SV=1	REV__tr|A0A553SLT5|A0A553SLT5_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_21120PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.244873046875	2	536.304613	1070.59467	1.2621	0.00067687	-0.79348	-0.00042555	0.46862	0.00025132	536.3044874301954	114.25	0.55382	113.2	113	113.55	-1.055					13	10	2	0	0	0	0.028476	1	8441	8441		88.643	0.88857	1	13231	+		29568	30261	24256	24283	32822	32822					0.0621986784751698
LFLTVRRMA	9	Unmodified	_LFLTVRRMA_					0	0	0			REV__ENST00000518067.5_1_8:25309047-25315927:-|nuORF	REV__ENST00000518067.5_1_8:25309047-25315927:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8319091796875	2	553.828786	1105.64302	1.4061	0.00077877	0.88233	0.00048866	2.2885	0.0012674	553.8291816775361	139.45	3.0735	137.95	136.76	139.84	-1.4952					150	61	3	0	0	0	0.67509	1	13628	13628		23.042	2.5607	1	110800	+		29569	27027	24257	24284	32823	32823					0.09442361487435846
LFLVCLKRMT	10	Carbamidomethyl (C),Oxidation (M)	_LFLVC(Carbamidomethyl (C))LKRM(Oxidation (M))T_	LFLVC(1)LKRMT	LFLVCLKRM(1)T	LFLVC(110)LKRMT	LFLVCLKRM(110)T	0	1	1		ENST00000366787.7_1_6:169617590-169617689:-|nuORF	ENST00000366787.7_1_6:169617590-169617689:-|nuORF	ENST00000366787.7_1_6:169617590-169617689:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	648.861328125	2	648.861969	1295.70938	0.55458	0.00035985	-0.22136	-0.00014363	0.33322	0.00021622	648.8613571950087	114.3	0.87051	114.3	114.06	114.93	0					39	18	3	0	0	0	0.11378	1	13050	13050		110.12	24.76	1	496690			29570	10829	24258	24285	32824	32824	112	303			0.0733580926716968
LFLVDDEID	9	Unmodified	_LFLVDDEID_					0	0	0		tr|A0A7D6VQE4|A0A7D6VQE4_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_20465PE=4SV=1	tr|A0A7D6VQE4|A0A7D6VQE4_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_20465PE=4SV=1	tr|A0A7D6VQE4|A0A7D6VQE4_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_20465PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.3236694335938	2	539.76878	1077.52301	0.68215	0.0003682	2.7624	0.0014911	3.4446	0.0018593	539.7697445758706	141.48	0.40147	141.48	141.23	141.64	0					11	7	2	0	0	0	0.027462	1	16527	16527		40.573	10.069	1	22310			29571	34846	24259	24286	32825	32825					-0.012653930960141224
LFLVFPID	8	Unmodified	_LFLVFPID_					0	0	0			REV__tr|A0A553SGG0|A0A553SGG0_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_10750PE=4SV=1	REV__tr|A0A553SGG0|A0A553SGG0_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_10750PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	481.2893371582031	2	482.281129	962.547705	0.10616	5.1201E-05	-4.3136	-0.0020804	-4.2075	-0.0020292	482.27890379261737	92.635	1.4473	91.467	90.919	92.366	-1.168					56	27	3	0	0	0	0.028476	1	8341	8341		31.579	0	1	130320	+		29572	29696	24260	24287	32826	32826					0.06493331568037775
LFLVFPID	8	Unmodified	_LFLVFPID_					0	0	0			REV__tr|A0A553SGG0|A0A553SGG0_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_10750PE=4SV=1	REV__tr|A0A553SGG0|A0A553SGG0_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_10750PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	482.281129	962.547705	2.5146	0.0012127	-1.8313	-0.0008832	0.68326	0.00032952	482.28009748285933	91.633	0.59259	91.633	91.372	91.964	0	0.036467	0.0018845	NaN	31.579	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	637400	+		29573	29696	24260	24287							0.06493331568037775
LFLVKMKETE	10	Unmodified	_LFLVKMKETE_					0	0	0			REV__SDK1|p.G1830Rfs*24|1|0.09|ENSG00000146555|chr7:4210109-4210110|-/CAGACAATGGACTC|frameshift_variant	REV__SDK1|p.G1830Rfs*24|1|0.09|ENSG00000146555|chr7:4210109-4210110|-/CAGACAATGGACTC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	620.2594604492188	2	619.346674	1236.6788	1.0562	0.00065415	-3.6956	-0.0022889	-2.6394	-0.0016347	619.3442637386206	143.84	1.0901	143.84	143.17	144.26	0					32	21	2	0	0	0	0.026956	1	16774	16774		19.997	0	1	68250	+		29574	20022	24261	24288	32827	32827					0.06992354153771885
LFLVLEKWL	9	Unmodified	_LFLVLEKWL_					0	0	0			REV__ENSG00000276231|ENST00000619866|PIK3R6	REV__ENSG00000276231|ENST00000619866|PIK3R6	MULTI-MSMS	OvCa99_classI_Rep5	1	580.8587036132812	2	580.857535	1159.70052	0.58654	0.0003407	1.4197	0.00082464	2.0062	0.0011653	580.8581786013297	153.9	2.0826	153.9	153.5	155.58	0					118	41	4	0	0	0	0.36502	1	18096	18096		55.504	0.73953	1	597830	+		29575	23629	24262	24289	32828	32828					0.12705526964668934
LFLVYFML	8	Unmodified	_LFLVYFML_					0	0	0			REV__tr|A0A553SHF5|A0A553SHF5_NIACISporecortexbiosynthesisproteinYabQOS=NialliacirculansOX=1397GN=yabQPE=4SV=1	REV__tr|A0A553SHF5|A0A553SHF5_NIACISporecortexbiosynthesisproteinYabQOS=NialliacirculansOX=1397GN=yabQPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	523.2893676757812	2	523.293182	1044.57181	0.75276	0.00039391	-0.2462	-0.00012883	0.50656	0.00026508	523.2933881237719	143.15	0.68059	143.15	142.83	143.51	0					25	13	3	0	0	0	0.64315	1	16732	16732		54.895	10.364	1	36796	+		29576	29797	24263	24290	32829	32829					0.05130848730050275
LFLVYFML	8	Unmodified	_LFLVYFML_					0	0	0			REV__tr|A0A553SHF5|A0A553SHF5_NIACISporecortexbiosynthesisproteinYabQOS=NialliacirculansOX=1397GN=yabQPE=4SV=1	REV__tr|A0A553SHF5|A0A553SHF5_NIACISporecortexbiosynthesisproteinYabQOS=NialliacirculansOX=1397GN=yabQPE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	523.293182	1044.57181	0.75276	0.00039391	-0.2462	-0.00012883	0.50656	0.00026508	523.2933881237719	143.15	0.68059	143.15	142.83	143.51	0	0	0	NaN	54.895	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36796	+		29577	29797	24263	24290							0.05130848730050275
LFLWCLPL	8	Unmodified	_LFLWCLPL_					0	0	0			REV__nc|ENSG00000165078|Q8N4T0-2|CPA6	REV__nc|ENSG00000165078|Q8N4T0-2|CPA6	MULTI-MSMS	OvCa99_classI_Rep5	1	502.7874450683594	2	502.785524	1003.5565	1.607	0.000808	2.6839	0.0013494	4.291	0.0021574	502.78657629909475	133.31	1.3501	133.31	132.99	134.34	0					66	28	3	0	0	0	0.69862	1	15575	15575		43.626	3.0534	1	1054800	+		29578	21053	24264	24291	32830	32830					0.05485981932872619
LFLYGKRLK	9	Unmodified	_LFLYGKRLK_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2759399414062	2	569.360776	1136.707	-0.095033	-5.4108E-05	0.10723	6.1051E-05	0.012194	6.9427E-06	569.3612062346948	56.559	0.16351	56.559	56.459	56.623	0					5	3	2	0	0	0	0.027462	1	4708	4708		50.025	0	1	106650	+		29579	19568	24265	24292	32831	32831					0.14411464916020122
LFLYRLDPQ	9	Unmodified	_LFLYRLDPQ_					0	0	0			REV__ENSG00000171236|ENST00000306390|LRG1	REV__ENSG00000171236|ENST00000306390|LRG1	MULTI-MSMS	OvCa99_classI_Rep5	1	582.8263549804688	2	582.824224	1163.63389	1.5475	0.00090195	1.1066	0.00064495	2.6541	0.0015469	582.8248487397215	128.32	1.9587	128.32	127.81	129.77	0					96	41	4	0	0	0	0.074342	1	14878	14878		104.75	0	1	1021600	+		29580	21605	24266	24293	32832	32832					0.058622914027409934
LFMDYNKDI	9	Unmodified	_LFMDYNKDI_					0	0	0		tr|A0A7D6VTS9|A0A7D6VTS9_9CLOTMotilityassociatedfactorglycosyltransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22475PE=4SV=1	tr|A0A7D6VTS9|A0A7D6VTS9_9CLOTMotilityassociatedfactorglycosyltransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22475PE=4SV=1	tr|A0A7D6VTS9|A0A7D6VTS9_9CLOTMotilityassociatedfactorglycosyltransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22475PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	579.78173828125	2	579.778625	1157.5427	-0.81629	-0.00047327	4.0012	0.0023198	3.1849	0.0018466	579.7807923511523	55.316	0.86749	55.316	55.064	55.932	0					53	20	4	0	0	0	0.19758	1	4523	4523		76.774	5.9579	1	1437300			29581	35139	24267	24294	32833	32833					-0.029773403568697177
LFMKVKNTL	9	Unmodified	_LFMKVKNTL_					0	0	0			REV__tr|A0A553STI0|A0A553STI0_NIACIMetallo-beta-lactamasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04880PE=4SV=1	REV__tr|A0A553STI0|A0A553STI0_NIACIMetallo-beta-lactamasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04880PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	547.3259887695312	2	547.325545	1092.63654	-0.1345	-7.3618E-05	2.9942	0.0016388	2.8597	0.0015652	547.3271925205654	93.792	1.8234	92.692	92.225	94.048	-1.0995					97	35	4	0	0	0	0.24951	1	8400	8400		68.787	0.30212	1	1121100	+		29582	30966	24268	24295	32834	32834					0.09392423536064598
LFMKVKNTL	9	Unmodified	_LFMKVKNTL_					0	0	0			REV__tr|A0A553STI0|A0A553STI0_NIACIMetallo-beta-lactamasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04880PE=4SV=1	REV__tr|A0A553STI0|A0A553STI0_NIACIMetallo-beta-lactamasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04880PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	547.3278198242188	2	547.325545	1092.63654	-1.0329	-0.00056535	3.974	0.0021751	2.9411	0.0016097	547.3277122576889	94.735	1.8458	92.839	92.358	94.204	-1.8956					106	36	5	0	0	0	0.37135	1	6131	6131		54.776	3.4409	1	1623200	+		29583	30966	24268	24295	32835	32835					0.09392423536064598
LFMLIMGGLP	10	Unmodified	_LFMLIMGGLP_					0	0	0			REV__tr|A0A7D7A3T7|A0A7D7A3T7_9CLOTPotassium-transportingATPasepotassium-bindingsubunitOS=ClostridiumintestinaleOX=36845GN=kdpAPE=3SV=1	REV__tr|A0A7D7A3T7|A0A7D7A3T7_9CLOTPotassium-transportingATPasepotassium-bindingsubunitOS=ClostridiumintestinaleOX=36845GN=kdpAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.3029174804688	2	546.303224	1090.5919	-0.16813	-9.1851E-05	-1.4175	-0.00077436	-1.5856	-0.00086621	546.3023688803465	115.73	1.3472	114.33	113.97	115.32	-1.3977					59	26	3	0	0	0	0.49566	1	10792	10792		54.765	3.4292	1	197030	+		29584	32595	24269	24296	32836	32836					0.05022276398381109
LFMQLAPKLR	10	Unmodified	_LFMQLAPKLR_					0	0	0		ENSG00000215182|ENST00000621226|MUC5AC	ENSG00000215182|ENST00000621226|MUC5AC	ENSG00000215182|ENST00000621226|MUC5AC	MULTI-SECPEP	OvCa99_classI_Rep5	1	608.3887329101562	2	608.865369	1215.71618	1.4492	0.00088234	-1.644	-0.001001	-0.19481	-0.00011861	608.8642618650028	144.14	0.69055	144.14	143.76	144.45	0					25	13	3	0	0	0	0.027056	1	16822	16822		27.882	13.017	1	74985			29585	9203	24270	24297	32837	32837					0.11695490210058779
LFMVHLLF	8	Unmodified	_LFMVHLLF_					0	0	0			REV__ENST00000414661.1_1_2:13143779-13143995:-|nuORF	REV__ENST00000414661.1_1_2:13143779-13143995:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	509.7863464355469	2	510.290974	1018.56739	-0.90196	-0.00046026	-2.4976	-0.0012745	-3.3995	-0.0017348	510.2898297287314	99.819	0.94311	98.989	98.318	99.261	-0.83051					23	18	2	0	0	0	0.028476	1	9124	9124		24.504	0	1	211900	+		29586	25523	24271	24298	32838	32838					0.058853843071574374
LFMVHLLF	8	Unmodified	_LFMVHLLF_					0	0	0			REV__ENST00000414661.1_1_2:13143779-13143995:-|nuORF	REV__ENST00000414661.1_1_2:13143779-13143995:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	510.290974	1018.56739	2.9008	0.0014802	2.5333	0.0012927	5.4341	0.002773	510.2920682329244	99.028	0.39032	99.028	98.764	99.154	0	0.019743	0.0029009	NaN	24.504	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	346350	+		29587	25523	24271	24298							0.058853843071574374
LFNEMIQEN	9	Unmodified	_LFNEMIQEN_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MSMS	OvCa99_classI_Rep5	1	569.27685546875	2	569.265881	1136.51721	2.3086	0.0013142	2.9734	0.0016926	5.282	0.0030069	569.2672297264662	106.08	0.4389	106.08	105.92	106.36	0					17	9	2	0	0	0	0.3076	1	11933	11933		62.107	3.3255	1	503940			29588	2211	24272	24299	32839	32839					-0.04558814879305828
LFNESNGLQS	10	Unmodified	_LFNESNGLQS_					0	0	0			REV__nc|ENSG00000159708|Q1X8D7-3|LRRC36	REV__nc|ENSG00000159708|Q1X8D7-3|LRRC36	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.7697143554688	2	554.767103	1107.51965	-1.6724	-0.00092782	4.4324	0.002459	2.76	0.0015312	554.7693859079982	107.67	1.7342	105.79	105.54	107.27	-1.8785					75	34	3	0	0	0	0.43433	1	9838	9838		63.534	2.5619	1	160690	+		29589	20623	24273	24300	32840	32840					-0.029806431499764585
LFNFCWTL	8	Unmodified	_LFNFCWTL_					0	0	0		ENSG00000080839|ENST00000373664|RBL1;nc|ENSG00000080839|P28749-2|RBL1	ENSG00000080839|ENST00000373664|RBL1	ENSG00000080839|ENST00000373664|RBL1	MULTI-MSMS	OvCa99_classI_Rep5	1	522.2554321289062	2	522.254588	1042.49462	0.54643	0.00028538	1.552	0.00081054	2.0984	0.0010959	522.2552950400525	132.52	0.94205	132.52	132.23	133.17	0					46	19	4	0	0	0	0.57878	1	15413	15413		68.485	2.6815	1	377890			29590	1644	24274	24301	32841	32841					-0.024923694862764023
LFNFYFIRKV	10	Unmodified	_LFNFYFIRKV_					0	0	0			REV__nc|ENSG00000196689|Q8NER1-3|TRPV1	REV__nc|ENSG00000196689|Q8NER1-3|TRPV1	MULTI-SECPEP	OvCa99_classI_Rep5	1	448.7828063964844	3	449.592169	1345.75468	2.2155	0.00099605	-0.64303	-0.0002891	1.5724	0.00070695	449.59188934337027	91.295	0.44451	91.295	91.057	91.502	0					13	10	2	0	0	0	0.027142	1	9823	9823		15.333	0	1	188620	+		29591	27761	24275	24302	32842	32842					0.09563119116182861
LFNHFLKID	9	Unmodified	_LFNHFLKID_					0	0	0		ENST00000548511.5_1_12:88439351-88442196:+|nuORF;ENST00000547468.1_1_12:88436564-88442196:+|nuORF;nc|ENSG00000133641|Q8N999-3|RLIG1;ENSG00000133641|ENST00000356891|C12orf29;ENST00000550333.5_1_12:88429286-88442196:+|nuORF;ENST00000552121.5_1_12:88429328-88442196:+|nuORF	ENST00000548511.5_1_12:88439351-88442196:+|nuORF	ENST00000548511.5_1_12:88439351-88442196:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	573.3240966796875	2	573.818941	1145.62333	-0.012131	-6.9612E-06	-1.624	-0.00093186	-1.6361	-0.00093882	573.8186645092428	111.87	0.57958	110.36	110	110.58	-1.5111					14	10	2	0	0	0	0.027462	1	10301	10301		32.812	4.9302	1	17573			29592	4230	24276	24303	32843	32843					0.05634308748312833
LFNKVVDPIVK	11	Unmodified	_LFNKVVDPIVK_					0	0	0			REV__tr|A0A553STY9|A0A553STY9_NIACIPTSbeta-glucosidetransportersubunitIIABCOS=NialliacirculansOX=1397GN=CEQ21_05960PE=4SV=1	REV__tr|A0A553STY9|A0A553STY9_NIACIPTSbeta-glucosidetransportersubunitIIABCOS=NialliacirculansOX=1397GN=CEQ21_05960PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	423.9388122558594	3	424.595579	1270.76491	0.021005	8.9185E-06	-1.9856	-0.00084306	-1.9645	-0.00083414	424.59440480352123	78.658	0.89616	76.918	76.512	77.408	-1.7398					24	17	3	0	0	0	0.025624	1	6624	6624		45.908	1.2687	1	15398	+		29593	31024	24277	24304	32844	32844					0.14035682050757714
LFNLIQIKI	9	Unmodified	_LFNLIQIKI_					0	0	0		tr|A0A7D6VWY9|A0A7D6VWY9_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05970PE=3SV=1	tr|A0A7D6VWY9|A0A7D6VWY9_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05970PE=3SV=1	tr|A0A7D6VWY9|A0A7D6VWY9_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05970PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.8276977539062	2	551.35516	1100.69577	-0.19304	-0.00010644	0.1235	6.8095E-05	-0.069539	-3.8341E-05	551.3549872391482	60.975	0.60104	60.975	60.688	61.289	0					24	13	3	0	0	0	0.027462	1	5353	5353		30.504	0	1	248440			29594	35265	24278	24305	32845	32845					0.1494464282188801
LFNLQNWL	8	Unmodified	_LFNLQNWL_					0	0	0		ENSG00000184434|ENST00000380055|LRRC19	ENSG00000184434|ENST00000380055|LRRC19	ENSG00000184434|ENST00000380055|LRRC19	MULTI-MSMS	OvCa99_classI_Rep5	1	524.2838745117188	2	524.284734	1046.55492	-1.5467	-0.00081093	-2.4739	-0.001297	-4.0206	-0.002108	524.2833307335856	70.062	0.89671	70.062	69.591	70.488	0					61	21	4	0	0	0	0.2589	1	6694	6694		114.59	6.4983	1	3886500			29595	8156	24279	24306	32846	32846					0.03350064168466815
LFNPDPQKV	9	Unmodified	_LFNPDPQKV_					0	0	0		ARMC8|p.D30N|1|0.08|ENSG00000114098|chr3:138209859-138209859|G/A|missense_variant	ARMC8|p.D30N|1|0.08|ENSG00000114098|chr3:138209859-138209859|G/A|missense_variant	ARMC8|p.D30N|1|0.08|ENSG00000114098|chr3:138209859-138209859|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.2854614257812	2	529.287474	1056.5604	-0.23033	-0.00012191	-3.5789	-0.0018943	-3.8093	-0.0020162	529.2853536749242	68.328	1.2763	64.838	64.526	65.802	-3.4902					61	25	3	0	0	0	0.28934	1	5087	5087		64.207	0	1	732110			29596	117	24280	24307	32847	32847					0.034377429602727716
LFNPVLTTSS	10	Unmodified	_LFNPVLTTSS_					0	0	0		ENST00000276654.9_1_8:105510067-105510277:-|nuORF	ENST00000276654.9_1_8:105510067-105510277:-|nuORF	ENST00000276654.9_1_8:105510067-105510277:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3015747070312	2	539.792589	1077.57063	-0.25527	-0.00013779	0.16194	8.7414E-05	-0.093333	-5.038E-05	539.7923318698668	128.33	2.6512	126.89	126.5	129.15	-1.4366					136	52	4	0	0	0	0.62299	1	12527	12527		39.253	0.23134	1	201700			29597	10032	24281	24308	32848	32848					0.03494305894832905
LFNSETILL	9	Unmodified	_LFNSETILL_					0	0	0			REV__ENST00000549526.1_1_12:50493222-50493899:+|nuORF	REV__ENST00000549526.1_1_12:50493222-50493899:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.2605590820312	2	525.297507	1048.58046	-1.3985	-0.00073464	4.2385	0.0022265	2.84	0.0014918	525.2992928378083	135.83	0.24599	134.73	134.6	134.85	-1.1076					6	4	2	0	0	0	0.027453	1	11001	11001		54.776	6.8607	1	12483	+		29598	27458	24282	24309	32849	32849					0.058114939002507526
LFNVNDIYE	9	Unmodified	_LFNVNDIYE_					0	0	0		sp|Q6SW65|CVC2_HCMVMCapsidvertexcomponent2OS=Humancytomegalovirus(strainMerlin)OX=295027GN=CVC2PE=3SV=1;sp|P16726|CVC2_HCMVACapsidvertexcomponent2OS=Humancytomegalovirus(strainAD169)OX=10360GN=CVC2PE=1SV=1	sp|Q6SW65|CVC2_HCMVMCapsidvertexcomponent2OS=Humancytomegalovirus(strainMerlin)OX=295027GN=CVC2PE=3SV=1	sp|Q6SW65|CVC2_HCMVMCapsidvertexcomponent2OS=Humancytomegalovirus(strainMerlin)OX=295027GN=CVC2PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	563.776123046875	2	563.774396	1125.53424	2.2941	0.0012934	-0.099792	-5.626E-05	2.1943	0.0012371	563.774097355137	129.02	0.92885	129.02	128.75	129.68	0					40	19	3	0	0	0	0.37135	1	14960	14960		54.776	2.4771	1	251150			29599	32891	24283	24310	32850	32850					-0.02350571001852586
LFPALDWVS	9	Unmodified	_LFPALDWVS_					0	0	0			REV__ENST00000261038.5_1_3:122513707-122513983:+|nuORF	REV__ENST00000261038.5_1_3:122513707-122513983:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.3004150390625	2	524.279118	1046.54368	-0.72186	-0.00037846	3.4175	0.0017917	2.6957	0.0014133	524.2810587947995	23.938	0.19408	23.938	23.793	23.987	0					5	3	2	0	0	0	0.027462	1	382	382		25.45	1.2474	1	14978	+		29600	23937	24284	24311	32851	32851					0.02227242074309288
LFPARITI	8	Unmodified	_LFPARITI_					0	0	0			REV__TEF|p.A266P|1|0.16|ENSG00000167074|chr22:41395844-41395844|G/C|missense_variant	REV__TEF|p.A266P|1|0.16|ENSG00000167074|chr22:41395844-41395844|G/C|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	465.79364013671875	2	465.792195	929.569838	0.819	0.00038149	1.9187	0.00089371	2.7377	0.0012752	465.7928953168896	140.29	0.91	140.29	140.02	140.93	0					40	18	3	0	0	0	0.61436	1	16376	16376		60.972	5.4677	1	246990	+		29601	29491	24285	24312	32852	32852					0.10223556036476111
LFPCSAQGDPE	11	Unmodified	_LFPCSAQGDPE_					0	0	0			REV__ENST00000462054.6_2_X:53295593-53296058:-|nuORF	REV__ENST00000462054.6_2_X:53295593-53296058:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	582.2581176757812	2	582.255514	1162.49647	1.2922	0.00075239	0.64647	0.00037641	1.9387	0.0011288	582.2561191990981	129.91	0.8541	129.91	129.63	130.48	0					37	17	3	0	0	0	0.56391	1	15067	15067		47.96	3.8427	1	209500	+		29602	26107	24286	24313	32853	32853					-0.07827405258967701
LFPGGLALTL	10	Unmodified	_LFPGGLALTL_					0	0	0			REV__ENSG00000142233|ENST00000270235|NTN5	REV__ENSG00000142233|ENST00000270235|NTN5	MULTI-MSMS	OvCa9_classI_Rep2	2	501.3017272949219	2	501.305136	1000.59572	-1.3993	-0.00070149	-2.752	-0.0013796	-4.1513	-0.0020811	501.30362374390734	103.02	2.0272	102.33	102.03	104.06	-0.68459					86	40	4	0	0	0	0.35697	1	9505	9505		73.975	11.867	1	287300	+		29603	19777	24287	24314	32854	32854					0.09544405488077246
LFPGPLAQIY	10	Unmodified	_LFPGPLAQIY_					0	0	0			REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4	REV__nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-MSMS	OvCa99_classI_Rep5	1	559.8178100585938	2	559.815867	1117.61718	1.7052	0.00095462	0.17306	9.688E-05	1.8783	0.0010515	559.8160408232393	143.18	4.5258	143.18	142.44	146.96	0					125	92	2	0	0	0	0.58282	1	16978	16978		44.117	5.3107	1	92918	+		29604	18871	24288	24315	32855	32855					0.06307790516802925
LFPILLLLG	9	Unmodified	_LFPILLLLG_					0	0	0			REV__nc|ENSG00000262980|Q8NGH6|OR52L2P	REV__nc|ENSG00000262980|Q8NGH6|OR52L2P	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.8297424316406	2	499.836071	997.65759	-0.38553	-0.0001927	-4.2447	-0.0021217	-4.6303	-0.0023144	499.83383906341265	74.9	1.4988	71.669	71.337	72.836	-3.2308					51	30	2	0	0	0	0.027462	1	5939	5939		29.842	8.1392	1	214800	+		29605	29184	24289	24316	32856	32856					0.15866756907234958
LFPKDDSMNW	10	Oxidation (M)	_LFPKDDSM(Oxidation (M))NW_		LFPKDDSM(1)NW		LFPKDDSM(65)NW	0	0	1			REV__ENST00000413123.5_1_2:175991908-176001171:-|nuORF	REV__ENST00000413123.5_1_2:175991908-176001171:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	634.7843627929688	2	634.784438	1267.55432	-0.80127	-0.00050864	0.14413	9.1493E-05	-0.65714	-0.00041714	634.7845527922411	34.563	0.98764	34.563	34.351	35.339	0					42	20	4	0	0	0	0.42082	1	1674	1674		65.465	9.0316	1	984170	+		29606	18280	24290	24317	32857	32857		422			-0.06875143333559208
LFPKDDSMNW	10	Oxidation (M)	_LFPKDDSM(Oxidation (M))NW_					0	0	1			REV__ENST00000413123.5_1_2:175991908-176001171:-|nuORF	REV__ENST00000413123.5_1_2:175991908-176001171:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	634.784438	1267.55432	-0.80127	-0.00050864	0.14413	9.1493E-05	-0.65714	-0.00041714	634.7845527922411	34.563	0.98764	34.563	34.351	35.339	0	0	0	NaN	65.465	42	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	984170	+		29607	18280	24290	24317				422			-0.06875143333559208
LFPKLQKVL	9	Unmodified	_LFPKLQKVL_					0	0	0			REV__ENST00000584437.5_1_17:56494308-56494482:-|nuORF	REV__ENST00000584437.5_1_17:56494308-56494482:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	543.3597412109375	2	543.357702	1084.70085	0.54812	0.00029782	1.8184	0.00098804	2.3665	0.0012859	543.3584829896616	140.94	0.84583	140.94	140.59	141.44	0					38	16	3	0	0	0	0.44294	1	16462	16462		47.916	7.1374	1	222950	+		29608	27842	24291	24318	32858	32858					0.16188946684519578
LFPLHRRLA	9	Unmodified	_LFPLHRRLA_					0	0	0			REV__nc|ENSG00000155093|Q92932-2|PTPRN2	REV__nc|ENSG00000155093|Q92932-2|PTPRN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.845703125	2	561.848368	1121.68218	-2.5142	-0.0014126	-2.2241	-0.0012496	-4.7383	-0.0026622	561.8469845001015	152.99	1.31	151.56	151.24	152.55	-1.4351					96	32	4	0	0	0	0.6959	1	15223	15223		19.36	4.4951	1	225430	+		29609	28621	24292	24319	32859	32859					0.12620829833326752
LFPLSILGW	9	Unmodified	_LFPLSILGW_					0	0	0		ENSG00000204394|ENST00000375663|VARS1;ENST00000375663.7_1_6:31749330-31749528:-|nuORF	ENSG00000204394|ENST00000375663|VARS1	ENSG00000204394|ENST00000375663|VARS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8087768554688	2	523.307678	1044.6008	1.6071	0.000841	-3.8855	-0.0020333	-2.2784	-0.0011923	523.3051794270306	110.85	1.0666	110.85	110.22	111.29	0					43	23	3	0	0	0	0.027462	1	12612	12612		47.916	15.103	1	472540			29610	8980	24293	24320	32860	32860					0.08028709350696772
LFPLTLVR	8	Unmodified	_LFPLTLVR_					0	0	0		ENSG00000116209|ENST00000234831|TMEM59	ENSG00000116209|ENST00000234831|TMEM59	ENSG00000116209|ENST00000234831|TMEM59	MULTI-MSMS	OvCa9_classI_Rep2	2	479.8057861328125	2	479.807845	957.601138	-1.1769	-0.00056468	-3.2127	-0.0015415	-4.3896	-0.0021062	479.80618413013457	55.51	2.1832	52.706	52.282	54.465	-2.804					112	43	4	0	0	0	0.57878	1	3899	3899		68.485	16.186	1	873530			29611	3163	24294	24321	32861	32861					0.12064129070574836
LFPNTSKKL	9	Unmodified	_LFPNTSKKL_					0	0	0		tr|A0A553SKS4|A0A553SKS4_NIACITypeII/IVsecretionsystemproteinOS=NialliacirculansOX=1397GN=CEQ21_19315PE=3SV=1	tr|A0A553SKS4|A0A553SKS4_NIACITypeII/IVsecretionsystemproteinOS=NialliacirculansOX=1397GN=CEQ21_19315PE=3SV=1	tr|A0A553SKS4|A0A553SKS4_NIACITypeII/IVsecretionsystemproteinOS=NialliacirculansOX=1397GN=CEQ21_19315PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	524.3147583007812	2	524.313492	1046.61243	0.99568	0.00052205	0.50599	0.0002653	1.5017	0.00078735	524.3138505577132	122.48	1.3582	121.45	121.16	122.52	-1.0286					84	25	5	0	0	0	0.56889	1	9452	9452		35.618	0.41757	1	461900			29612	33647	24295	24322	32862	32862					0.09098906374038052
LFPPDLVIL	9	Unmodified	_LFPPDLVIL_					0	0	0		nc|ENSG00000180316|Q8N8W4-2|PNPLA1;nc|ENSG00000180316|Q8N8W4-3|PNPLA1;PNPLA1|p.P385Qfs*81|1|0.05|ENSG00000180316|chr6:36302238-36302239|-/AAGAAACCATTTTTGCAAAGGCCATGCTG|frameshift_variant;nc|ENSG00000180316|Q8N8W4|PNPLA1;ENSG00000180316|ENST00000636260|PNPLA1	nc|ENSG00000180316|Q8N8W4-2|PNPLA1	nc|ENSG00000180316|Q8N8W4-2|PNPLA1	MULTI-MSMS	OvCa9_classI_Rep2	2	513.8153076171875	2	513.815336	1025.61612	-0.4504	-0.00023142	0.053858	2.7673E-05	-0.39654	-0.00020375	513.8152848157494	74.741	2.4404	72.77	72.324	74.764	-1.9711					110	46	3	0	0	0	0.58665	1	6117	6117		33.516	3.0119	1	2623500			29613	7868	24296	24323	32863	32863					0.10433576147897838
LFPQPEAAQVL	11	Unmodified	_LFPQPEAAQVL_					0	0	0			REV__ENST00000445946.3_1_10:89621729-89621954:-|nuORF	REV__ENST00000445946.3_1_10:89621729-89621954:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	606.8339233398438	2	606.834788	1211.65502	0.87439	0.00053061	-4.3759	-0.0026555	-3.5016	-0.0021249	606.8318108251257	87.469	2.3648	86.038	85.642	88.007	-1.4311					115	47	6	0	0	0	0.41656	1	7617	7617		59.931	8.7381	1	1990900	+		29614	25894	24297	24324	32864	32864					0.05766256711604001
LFPTNPTLI	9	Unmodified	_LFPTNPTLI_					0	0	0			REV__nc|ENSG00000139182|Q9BQT9-2|CLSTN3	REV__nc|ENSG00000139182|Q9BQT9-2|CLSTN3	MULTI-MSMS	OvCa9_classI_Rep2	2	508.29168701171875	2	508.294768	1014.57498	-0.83136	-0.00042257	-3.4537	-0.0017555	-4.2851	-0.0021781	508.2928265703731	115.58	1.632	115.47	114.95	116.58	-0.11777					68	32	4	0	0	0	0.2077	1	11033	11033		75.043	5.4157	1	251420	+		29615	19595	24298	24325	32865	32865					0.06827815108431423
LFPTNPTLI	9	Unmodified	_LFPTNPTLI_					0	0	0			REV__nc|ENSG00000139182|Q9BQT9-2|CLSTN3	REV__nc|ENSG00000139182|Q9BQT9-2|CLSTN3	MULTI-MSMS	OvCa9_classI_Rep3	3	508.290771484375	2	508.294768	1014.57498	-0.9868	-0.00050158	-3.2377	-0.0016457	-4.2245	-0.0021473	508.29294653313184	116.44	1.3851	115.39	115.05	116.43	-1.0414					64	27	4	0	0	0	0.33652	1	8713	8713		58.782	0.97068	1	264190	+		29616	19595	24298	24325	32866	32866					0.06827815108431423
LFPVLHRSP	9	Unmodified	_LFPVLHRSP_					0	0	0		ENST00000294189.10_2_3:52029896-52029950:-|nuORF	ENST00000294189.10_2_3:52029896-52029950:-|nuORF	ENST00000294189.10_2_3:52029896-52029950:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	533.3125610351562	2	533.313826	1064.6131	1.3686	0.00072987	-2.7371	-0.0014597	-1.3686	-0.00072987	533.3122789714088	149.57	0.6842	149.57	149.26	149.94	0					27	13	3	0	0	0	0.38529	1	17524	17524		53.351	4.1407	1	116670			29617	10113	24299	24326	32867	32867					0.08337745813742004
LFQKLLKLK	9	Unmodified	_LFQKLLKLK_					0	0	0		L1MB3_dup13915|chr15:92712904-92713305:+|1.0833414765900655|0.0952392372427663|3.51|429.0|17|1|anti-sense	L1MB3_dup13915|chr15:92712904-92713305:+|1.0833414765900655|0.0952392372427663|3.51|429.0|17|1|anti-sense	L1MB3_dup13915|chr15:92712904-92713305:+|1.0833414765900655|0.0952392372427663|3.51|429.0|17|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.2962646484375	2	565.886627	1129.7587	2.7777	0.0015719	-1.0903	-0.000617	1.6874	0.00095488	566.3874393694074	121.27	0.60224	121.27	120.97	121.57	0					26	13	2	0	0	0	0.027462	1	13981	13981		17.365	4.4058	1	123640			29618	14592	24300	24327	32868	32868					0.19901208609917376
LFQKTCLQI	9	Carbamidomethyl (C)	_LFQKTC(Carbamidomethyl (C))LQI_	LFQKTC(1)LQI		LFQKTC(150)LQI		0	1	0		L1MA4A_dup2646|chr7:55461716-55462655:-|2.470314538974461|0.4304615177296836|2.52|429.0|68|3|anti-sense	L1MA4A_dup2646|chr7:55461716-55462655:-|2.470314538974461|0.4304615177296836|2.52|429.0|68|3|anti-sense	L1MA4A_dup2646|chr7:55461716-55462655:-|2.470314538974461|0.4304615177296836|2.52|429.0|68|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	575.8180541992188	2	575.818084	1149.62162	0.30068	0.00017314	-1.8884	-0.0010874	-1.5878	-0.00091426	575.8168777843473	101.84	1.7794	101.84	101.48	103.26	0					86	41	3	0	0	0	0.015391	2	11351	11327;11351		152.47	26.657	1	2788900			29619	14581	24301	24328	32869;32870	32870	167				0.05278931668044606
LFQLIFIL	8	Unmodified	_LFQLIFIL_					0	0	0			REV__tr|A0A7D7A0A2|A0A7D7A0A2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09165PE=4SV=1	REV__tr|A0A7D7A0A2|A0A7D7A0A2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09165PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	503.8193359375	2	503.820421	1005.62629	0.88137	0.00044405	-2.3822	-0.0012002	-1.5009	-0.00075617	503.8190775441686	139.63	1.9628	139.63	139.22	141.18	0					67	40	3	0	0	0	0.60486	1	16283	16283		62.978	7.4742	1	172390	+		29620	32443	24302	24329	32871	32871					0.12370183873122187
LFQLLFTIL	9	Unmodified	_LFQLLFTIL_					0	0	0		nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3	nc|ENSG00000198838|Q15413-2|RYR3	nc|ENSG00000198838|Q15413-2|RYR3	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.34423828125	2	554.344261	1106.67397	-1.227	-0.0006802	0.90791	0.0005033	-0.31912	-0.0001769	554.3446336865961	126.95	1.6713	125.52	125.19	126.87	-1.4357					85	32	5	0	0	0	0.50149	1	12158	12158		42.396	1.618	1	250630			29621	8886	24303	24330	32872	32872					0.12489838073338433
LFQLRGGE	8	Unmodified	_LFQLRGGE_					0	0	0		ENST00000419037.5_1_7:99753435-99755466:-|nuORF;ENST00000498638.1_1_7:99753991-99754759:-|nuORF;ENSG00000146826|ENST00000316937|TRAPPC14	ENST00000419037.5_1_7:99753435-99755466:-|nuORF	ENST00000419037.5_1_7:99753435-99755466:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	460.2548522949219	2	460.253434	918.492316	2.0231	0.00093113	0.27119	0.00012482	2.2943	0.0010559	460.2534698566036	78.182	1.4666	78.182	77.844	79.311	0					92	35	4	0	0	0	0.35163	1	7903	7903		97.473	3.4663	1	6956900			29622	5307	24304	24331	32873	32873					0.029809181002860896
LFQPLDLLK	9	Unmodified	_LFQPLDLLK_					0	0	0		ENST00000458247.1_1_1:172717802-172718051:+|nuORF;ENSG00000144659|ENST00000650617|SLC25A38	ENST00000458247.1_1_1:172717802-172718051:+|nuORF	ENST00000458247.1_1_1:172717802-172718051:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	543.8309326171875	2	543.831517	1085.64848	-1.0706	-0.00058225	1.241	0.00067489	0.17035	9.2641E-05	543.8318598925507	115.73	1.682	115.61	115.24	116.92	-0.11777					70	33	4	0	0	0	0.22621	1	11057	11057		71.877	2.2498	1	205760			29623	5170	24305	24332	32874	32874					0.10908363550879585
LFQPQPLYL	9	Unmodified	_LFQPQPLYL_					0	0	0			REV__nc|ENSG00000166348|Q70EL1-9|USP54	REV__nc|ENSG00000166348|Q70EL1-9|USP54	MULTI-MSMS	OvCa99_classI_Rep5	1	559.8173828125	2	559.815867	1117.61718	2.0742	0.0011611	-0.45737	-0.00025604	1.6168	0.0009051	559.8156915922438	133.1	8.2265	133.1	132.6	140.83	0					464	175	6	0	0	0	0.42057	1	15899	15899		50.025	4.0726	1	47573000	+		29624	21180	24306	24333	32875	32875					0.06307790516780187
LFQPQPLYL	9	Unmodified	_LFQPQPLYL_					0	0	0			REV__nc|ENSG00000166348|Q70EL1-9|USP54	REV__nc|ENSG00000166348|Q70EL1-9|USP54	MSMS	OvCa99_classI_Rep5	1	559.8174438476562	2	559.815867	1117.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.35	1	142.35	141.85	142.85	0								0	0	0	0.16672	1	16631	16631		60.294	6.9425	1		+		29625	21180	24306	24333	32876	32876					0.06307790516780187
LFQPTIFCV	9	Unmodified	_LFQPTIFCV_					0	0	0			REV__ENSG00000058063|ENST00000323116|ATP11B	REV__ENSG00000058063|ENST00000323116|ATP11B	MULTI-MSMS	OvCa9_classI_Rep3	3	534.2835693359375	2	534.283346	1066.55214	-2.0798	-0.0011112	3.3555	0.0017928	1.2757	0.00068158	534.2851091761327	143.26	1.286	142.27	141.94	143.23	-0.9903					60	25	3	0	0	0	0.61208	1	11923	11923		30.504	1.3541	1	116190	+		29626	16724	24307	24334	32877	32877					0.021524727192854698
LFQRFAKIFI	10	Unmodified	_LFQRFAKIFI_					0	0	0		ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8820190429688	2	641.887158	1281.75976	-5.3554	-0.0034376	-1.7795	-0.0011422	-7.1349	-0.0045798	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.72319	1	12995	12995		27.882	2.3082	1	804890			29627	5823	24308	24335	32878	32878					0.13015422978833158
LFQRIRCI	8	Unmodified	_LFQRIRCI_					0	0	0		ENST00000376723.7_1_2:128947470-128947854:+|nuORF	ENST00000376723.7_1_2:128947470-128947854:+|nuORF	ENST00000376723.7_1_2:128947470-128947854:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.772705078125	2	524.807854	1047.60115	2.0289	0.0010648	-3.5175	-0.001846	-1.4886	-0.00078123	524.8057590682303	98.016	0.63603	98.016	97.611	98.247	0					19	13	2	0	0	0	0.028476	1	10734	10734		35.201	0	1	455350			29628	11078	24309	24336	32879	32879					0.07925805798913643
LFQRTELG	8	Unmodified	_LFQRTELG_					0	0	0		nc|ENSG00000136153|Q8WWI1-3|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7	nc|ENSG00000136153|Q8WWI1-3|LMO7	nc|ENSG00000136153|Q8WWI1-3|LMO7	MULTI-MSMS	OvCa99_classI_Rep5	1	482.26654052734375	2	482.266542	962.51853	0.4736	0.0002284	-0.56273	-0.00027138	-0.089123	-4.2981E-05	482.2662579892328	72.554	2.7982	72.554	70.994	73.792	0					137	69	4	0	0	0	0.59148	1	7112	7112		65.803	0	1	30649000			29629	15035	24310	24337	32880	32880					0.03577187271741877
LFQSYISIL	9	Unmodified	_LFQSYISIL_					0	0	0			REV__nc|ENSG00000115392|Q9NW38-2|FANCL	REV__nc|ENSG00000115392|Q9NW38-2|FANCL	MULTI-MSMS	OvCa99_classI_Rep5	1	542.7926635742188	2	542.307875	1082.6012	1.8794	0.0010192	-2.7454	-0.0014889	-0.86599	-0.00046963	542.3056808881333	110.28	1.3412	110.28	109.73	111.07	0					127	29	7	0	0	0	0.27001	1	12464	12464		66.429	3.4509	1	2809000	+		29630	18241	24311	24338	32881	32881					0.06320084279923321
LFQWSRKQL	9	Unmodified	_LFQWSRKQL_					0	0	0			REV__SCN11A|p.P667Q|1|0.45|ENSG00000168356|chr3:38899916-38899916|G/T|missense_variant	REV__SCN11A|p.P667Q|1|0.45|ENSG00000168356|chr3:38899916-38899916|G/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	602.7734375	2	603.343115	1204.67168	1.5039	0.00090734	-0.44982	-0.00027139	1.054	0.00063595	603.3427516670265	132.96	0.42291	132.96	132.75	133.17	0					14	8	2	0	0	0	0.027462	1	15456	15456		35.618	2.8678	1	173010	+		29631	29347	24312	24339	32882	32882					0.07752802388222335
LFQYDQNL	8	Unmodified	_LFQYDQNL_					0	0	0		ENST00000263593.7_1_11:124506789-124506846:-|nuORF	ENST00000263593.7_1_11:124506789-124506846:-|nuORF	ENST00000263593.7_1_11:124506789-124506846:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.3173217773438	2	520.756007	1039.49746	-0.45437	-0.00023662	-4.4602	-0.0023227	-4.9146	-0.0025593	521.2552555674325	46.6	0.21979	46.6	46.456	46.676	0					8	4	2	0	0	0	0.028476	1	3307	3307		23.042	0	1	59970			29632	9914	24313	24340	32883	32883					-0.020708228277726448
LFQYLITT	8	Unmodified	_LFQYLITT_					0	0	0			REV__ENSG00000165997|ENST00000377275|ARL5B	REV__ENSG00000165997|ENST00000377275|ARL5B	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.253173828125	2	499.781493	997.548434	0.5602	0.00027998	3.4991	0.0017488	4.0593	0.0020288	500.28602210314403	159.93	0.5408	159.93	159.62	160.16	0					13	10	2	0	0	0	0.028476	1	18748	18748		12.207	0	1	20327	+		29633	21147	24314	24341	32884	32884					0.04956126217086876
LFRASFPSLL	10	Unmodified	_LFRASFPSLL_					0	0	0		ENST00000553027.1_1_12:49318530-49318749:-|nuORF	ENST00000553027.1_1_12:49318530-49318749:-|nuORF	ENST00000553027.1_1_12:49318530-49318749:-|nuORF	MSMS	OvCa99_classI_Rep5	1	575.8356323242188	2	575.834591	1149.65463	NaN	NaN	NaN	NaN	NaN	NaN	NaN	127	1	127	126.5	127.5	0								0	0	0	0.13029	1	14693	14693		56.721	1.2168	1				29634	13617	24315	24342	32885	32885					0.0857888178243229
LFRCTFSIL	9	Unmodified	_LFRCTFSIL_					0	0	0			REV__nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	REV__nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	MULTI-MSMS	OvCa99_classI_Rep5	1	550.3023681640625	2	550.30207	1098.58959	0.61726	0.00033968	-1.4872	-0.00081839	-0.86991	-0.00047871	550.3010836773232	141.86	2.0274	141.86	141.49	143.51	0					101	40	5	0	0	0	0.21395	1	16598	16598		73.975	2.679	1	2049300	+		29635	22759	24316	24343	32886	32886					0.044235639849148356
LFRCTFSIL	9	Unmodified	_LFRCTFSIL_					0	0	0			REV__nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	REV__nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	550.30207	1098.58959	-3.1413	-0.0017287	0.14929	8.2153E-05	-2.992	-0.0016465	550.3020983905592	142.86	1.1863	141.87	141.35	142.54	-0.9903	0.013707	0.0019488	NaN	73.975	29	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12715	+		29636	22759	24316	24343							0.044235639849148356
LFRCTFSIL	9	Unmodified	_LFRCTFSIL_					0	0	0			REV__nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	REV__nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	550.30207	1098.58959	-0.28872	-0.00015888	-2.81	-0.0015463	-3.0987	-0.0017052	550.3003501025133	143.28	1.3732	141.84	141.51	142.88	-1.4427	-0.018195	-0.0013082	NaN	73.975	46	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39692	+		29637	22759	24316	24343							0.044235639849148356
LFRDVSFYI	9	Unmodified	_LFRDVSFYI_					0	0	0		ENST00000434116.6_1_15:65916409-65944223:+|nuORF;nc|ENSG00000074621|O60721-3|SLC24A1;nc|ENSG00000074621|O60721-2|SLC24A1;ENSG00000074621|ENST00000261892|SLC24A1;SLC24A2|p.E319Lfs*25|1|0.07|ENSG00000155886|chr9:19622276-19622277|-/AG|frameshift_variant;ENSG00000155886|ENST00000341998|SLC24A2;nc|ENSG00000155886|Q9UI40-2|SLC24A2;SLC24A2|p.S531Rfs*7|1|0.08|ENSG00000155886|chr9:19521037-19521037|A/-|frameshift_variant	ENST00000434116.6_1_15:65916409-65944223:+|nuORF;nc|ENSG00000155886|Q9UI40-2|SLC24A2;SLC24A2|p.S531Rfs*7|1|0.08|ENSG00000155886|chr9:19521037-19521037|A/-|frameshift_variant	ENST00000434116.6_1_15:65916409-65944223:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.2730712890625	2	580.310949	1158.60735	-0.77082	-0.00044731	0.45674	0.00026505	-0.31408	-0.00018226	580.3104374859531	69.691	0.49124	69.691	69.307	69.798	0					17	11	2	0	0	0	0.027462	1	6588	6588		38.806	13.356	1	192010			29638	11836;15111;32822	24317	24344	32887	32887					0.03438602511437239
LFRFGFRS	8	Unmodified	_LFRFGFRS_					0	0	0			REV__ENSG00000185522|ENST00000329451|LMNTD2	REV__ENSG00000185522|ENST00000329451|LMNTD2	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.2849731445312	2	515.285069	1028.55558	-1.8262	-0.00094104	-3.616	-0.0018633	-5.4423	-0.0028043	515.2832089324711	107.23	3.0946	105.36	105.01	108.11	-1.8785					136	60	5	0	0	0	0.73938	1	9886	9886		31.955	0.42505	1	4662000	+		29639	22511	24318	24345	32888	32888					0.04244903608196182
LFRFLVSILM	10	Unmodified	_LFRFLVSILM_					0	0	0		ENST00000304858.6_1_5:132406177-132408961:+|nuORF	ENST00000304858.6_1_5:132406177-132408961:+|nuORF	ENST00000304858.6_1_5:132406177-132408961:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.868408203125	2	619.87012	1237.72569	-1.8762	-0.001163	0.78566	0.000487	-1.0905	-0.00067597	619.8704234308321	147.79	3.8764	146.35	144.25	148.12	-1.4351					189	77	4	0	0	0	0.78463	1	14453	14453		20.947	3.4789	1	269210			29640	10227	24319	24346	32889	32889					0.11633258495567134
LFRFSGSLL	9	Unmodified	_LFRFSGSLL_					0	0	0			REV__ENST00000448963.5_1_10:91597071-91597797:+|nuORF	REV__ENST00000448963.5_1_10:91597071-91597797:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2804565429688	2	520.300384	1038.58622	0.87193	0.00045366	-0.033625	-1.7495E-05	0.8383	0.00043617	520.3003637306366	102.03	0.51443	102.03	101.78	102.29	0					14	11	2	0	0	0	0.027353	1	11358	11358		82.241	0	1	98524	+		29641	25939	24320	24347	32890	32890					0.06846637202579586
LFRFSNMP	8	Unmodified	_LFRFSNMP_					0	0	0			REV__ENST00000439961.2_1_1:160287226-160287493:+|nuORF	REV__ENST00000439961.2_1_1:160287226-160287493:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	506.2597961425781	2	506.257662	1010.50077	-0.50726	-0.0002568	2.837	0.0014363	2.3298	0.0011795	506.2592188272637	80.284	3.2748	77.944	77.563	80.838	-2.3399					161	64	6	0	0	0	0.59148	1	4423	4423		65.803	7.9919	1	3690200	+		29642	25828	24321	24348	32891	32891					-0.004058512547430837
LFRFSNMP	8	Unmodified	_LFRFSNMP_					0	0	0			REV__ENST00000439961.2_1_1:160287226-160287493:+|nuORF	REV__ENST00000439961.2_1_1:160287226-160287493:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.25982666015625	2	506.257662	1010.50077	-1.11	-0.00056195	2.8365	0.001436	1.7265	0.00087406	506.2590571991676	81.025	1.8956	78.314	77.81	79.706	-2.7106					142	38	6	0	0	0	0.59148	1	6656	6656		65.803	2.4969	1	3738200	+		29643	25828	24321	24348	32892	32892					-0.004058512547430837
LFRGPETESPN	11	Unmodified	_LFRGPETESPN_					0	0	0			REV__tr|A0A553SJM8|A0A553SJM8_NIACIPirinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_17025PE=3SV=1	REV__tr|A0A553SJM8|A0A553SJM8_NIACIPirinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_17025PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	623.810546875	2	623.806759	1245.59897	1.2529	0.00078154	3.2732	0.0020418	4.526	0.0028234	623.8086073578006	133.04	1.7337	133.04	132.6	134.34	0					70	36	4	0	0	0	0.31264	1	15450	15450		67.494	2.0283	1	1236500	+		29644	30019	24322	24349	32893	32893					-0.014009961958663553
LFRKTRRHTR	10	Unmodified	_LFRKTRRHTR_					0	0	0			REV__ADAMTS9|p.T768Lfs*29|1|0.04|ENSG00000163638|chr3:64631542-64631542|T/-|frameshift_variant	REV__ADAMTS9|p.T768Lfs*29|1|0.04|ENSG00000163638|chr3:64631542-64631542|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	457.6074523925781	3	457.612849	1369.81672	-6.2055	-0.0028397	-4.0897	-0.0018715	-10.295	-0.0047112	457.6108688134911	157.03	3.4081	155.86	154.91	158.32	-1.1707					147	80	2	0	0	0	0.82892	1	13608	13608		15.333	0.63944	1	68588	+		29645	15566	24323	24350	32894	32894					0.14660283307921418
LFRLLLRF	8	Unmodified	_LFRLLLRF_					0	0	0		CYP4F22|p.F349Lfs*21|1|0.04|ENSG00000171954|chr19:15544190-15544190|C/-|frameshift_variant;CYP4F22|p.M270Ffs*111|1|0.04|ENSG00000171954|chr19:15540585-15540586|-/TTTTTAAAAAATAATGGCTTTGTTGAGACACA|frameshift_variant;ENSG00000171954|ENST00000269703|CYP4F22	CYP4F22|p.F349Lfs*21|1|0.04|ENSG00000171954|chr19:15544190-15544190|C/-|frameshift_variant;REV__CYP4F22|p.F349Lfs*21|1|0.04|ENSG00000171954|chr19:15544190-15544190|C/-|frameshift_variant	CYP4F22|p.F349Lfs*21|1|0.04|ENSG00000171954|chr19:15544190-15544190|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	539.3531494140625	2	539.350212	1076.68587	2.2939	0.0012372	4.2849	0.0023111	6.5788	0.0035483	539.3523735364151	63.128	1.3441	60.094	59.756	61.1	-3.0339					58	26	3	0	0	0	0.75915	1	2361	2361		20.482	0	1	102560			29646	703;16263	24324	24351	32895	32895					0.15059499607195903
LFRLTKHSE	9	Unmodified	_LFRLTKHSE_					0	0	0			REV__ENST00000585297.1_1_17:8869217-8870176:+|nuORF	REV__ENST00000585297.1_1_17:8869217-8870176:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.8094482421875	2	565.819473	1129.62439	2.5661	0.0014519	-2.2937	-0.0012978	0.27244	0.00015415	565.8210745624128	82.7	0.30179	82.7	82.522	82.824	0					17	6	4	0	0	0	0.027462	1	8567	8567		39.253	7.298	1	250180	+		29647	27855	24325	24352	32896	32896					0.06476523117225952
LFRNGYLRA	9	Unmodified	_LFRNGYLRA_					0	0	0			REV__ENSG00000101825|ENST00000217939|MXRA5	REV__ENSG00000101825|ENST00000217939|MXRA5	MULTI-SECPEP	OvCa9_classI_Rep3	3	554.3175048828125	2	555.314358	1108.61416	0.89095	0.00049476	1.4811	0.00082249	2.3721	0.0013172	555.3151700297283	122.06	0.99576	121.03	120.8	121.79	-1.0286					29	18	2	0	0	0	0.027462	1	9344	9344		29.15	0	1	26377	+		29648	17519	24326	24353	32897	32897					0.06419960182643081
LFRPSHLTN	9	Unmodified	_LFRPSHLTN_					0	0	0		ENSG00000167004|ENST00000300289|PDIA3;ENST00000471856.1_1_1:146649692-146651075:+|nuORF;ENST00000434494.5_1_15:44038867-44063413:+|nuORF	ENSG00000167004|ENST00000300289|PDIA3	ENSG00000167004|ENST00000300289|PDIA3	MULTI-MSMS	OvCa99_classI_Rep5	1	542.7987060546875	2	542.79854	1083.58253	1.3483	0.00073184	-1.173	-0.00063668	0.17533	9.5167E-05	542.7977847144131	147.03	0.8853	147.03	146.62	147.5	0					52	17	4	0	0	0	0.64427	1	17196	17196		26.693	0	1	813350			29649	6746	24327	24354	32898	32898					0.04407967428710435
LFRRIKSP	8	Unmodified	_LFRRIKSP_					0	0	0			REV__ENST00000411529.6_2_2:178086820-178086862:+|nuORF	REV__ENST00000411529.6_2_2:178086820-178086862:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	509.7856750488281	2	508.821818	1015.62908	-0.85383	-0.00043445	-0.67305	-0.00034246	-1.5269	-0.00077691	508.82139751222223	99.17	1.6388	98.277	97.857	99.496	-0.89306					104	32	6	0	0	0	0.028476	1	9112	9112		40.573	0	1	762510	+		29650	25490	24328	24355	32899	32899					0.12189452050643013
LFRRPLSPA	9	Unmodified	_LFRRPLSPA_					0	0	0		ENST00000397981.7_1_19:7977316-7977859:+|nuORF	ENST00000397981.7_1_19:7977316-7977859:+|nuORF	ENST00000397981.7_1_19:7977316-7977859:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	528.8193359375	2	528.819276	1055.624	-0.71786	-0.00037962	3.4893	0.0018452	2.7715	0.0014656	528.8209765807109	73.376	1.4125	70.976	70.378	71.79	-2.3999					70	26	4	0	0	0	0.67509	1	5986	5986		23.042	1.0826	1	825140			29651	11359	24329	24356	32900	32900					0.09841148188024818
LFRRVVLHY	9	Unmodified	_LFRRVVLHY_					0	0	0			REV__chr6:109250991-109254448|247|18.56|0.13|7.16|+|1|TE_info:L1PA2,L1PA2_dup2028,L1,LINE,donor,-,109245219,109250991|None,CCDC162P|102	REV__chr6:109250991-109254448|247|18.56|0.13|7.16|+|1|TE_info:L1PA2,L1PA2_dup2028,L1,LINE,donor,-,109245219,109250991|None,CCDC162P|102	MULTI-SECPEP	OvCa99_classI_Rep5	1	601.7977905273438	2	601.861475	1201.7084	0.82841	0.00049859	-0.77944	-0.00046912	0.048966	2.9471E-05	602.3621948916849	160.18	0.34911	160.18	160.01	160.35	0					11	6	2	0	0	0	0.027462	1	18782	18782		20.482	0	1	22053	+		29652	16067	24330	24357	32901	32901					0.115610990048026
LFRTDEAL	8	Unmodified	_LFRTDEAL_					0	0	0			REV__tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	REV__tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	482.7618103027344	2	482.758549	963.502546	2.1392	0.0010327	1.1547	0.00055742	3.2938	0.0015901	482.7588804234167	57.803	3.1186	54.676	53.456	56.575	-3.1264					158	85	3	0	0	0	0.74229	1	1662	1662		30.504	2.2494	1	89902	+		29653	31958	24331	24358	32902	32902					0.01933481034848228
LFRVCAERL	9	Unmodified	_LFRVCAERL_					0	0	0			REV__nc|ENSG00000149243|Q6PF15-2|KLHL35	REV__nc|ENSG00000149243|Q6PF15-2|KLHL35	MULTI-MSMS	OvCa9_classI_Rep2	2	553.809326171875	2	553.810593	1105.60663	-0.16576	-9.1799E-05	-1.4312	-0.00079263	-1.597	-0.00088443	553.8101806615355	83.977	2.0185	82.431	82.023	84.041	-1.5462					101	39	3	0	0	0	0.13504	1	7219	7219		87.696	5.4559	1	516380	+		29654	20150	24332	24359	32903	32903					0.05805484590700871
LFRVIVVPD	9	Unmodified	_LFRVIVVPD_					0	0	0			REV__ENSG00000174145|ENST00000309447|NWD2	REV__ENSG00000174145|ENST00000309447|NWD2	MULTI-MSMS	OvCa9_classI_Rep3	3	529.3231201171875	2	529.32386	1056.63317	-1.1676	-0.00061804	0.78416	0.00041508	-0.38345	-0.00020297	529.3242535974534	136.04	1.0338	134.93	134.65	135.69	-1.1076					52	20	3	0	0	0	0.53957	1	11038	11038		38.806	0	1	71825	+		29655	21813	24333	24360	32904	32904					0.10711496753697247
LFRVPEVV	8	Unmodified	_LFRVPEVV_					0	0	0			REV__nc|ENSG00000152061|Q5R372-2|RABGAP1L	REV__nc|ENSG00000152061|Q5R372-2|RABGAP1L	MULTI-MSMS	OvCa9_classI_Rep2	2	479.78546142578125	2	479.789653	957.564752	-2.7309	-0.0013103	-1.8663	-0.00089541	-4.5971	-0.0022057	479.7886280773358	36.925	0.73951	34.216	34.09	34.83	-2.7097					26	14	3	0	0	0	0.7224	1	1626	1626		38.806	0	1	115520	+		29656	28929	24334	24361	32905	32905					0.0842725217385123
LFRYGGEEF	9	Unmodified	_LFRYGGEEF_					0	0	0		tr|A0A553SG04|A0A553SG04_NIACIResponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_09860PE=4SV=1	tr|A0A553SG04|A0A553SG04_NIACIResponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_09860PE=4SV=1	tr|A0A553SG04|A0A553SG04_NIACIResponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_09860PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.8173828125	2	559.269281	1116.52401	2.4595	0.0013755	2.8611	0.0016001	5.3206	0.0029756	559.2709174558674	136.58	0.66628	136.58	136.25	136.92	0					30	13	3	0	0	0	0.027462	1	15899	15899		45.952	13.14	1	116940			29657	33101	24335	24362	32906	32906					-0.029591339364287705
LFRYLKVL	8	Unmodified	_LFRYLKVL_					0	0	0			REV__ENST00000552705.5_1_19:49119841-49122400:-|nuORF	REV__ENST00000552705.5_1_19:49119841-49122400:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.7868041992188	2	526.33677	1050.65899	0.97674	0.0005141	1.1471	0.00060377	2.1239	0.0011179	526.3371430628639	109.72	0.53741	109.72	109.5	110.04	0					23	11	3	0	0	0	0.028476	1	12475	12475		37.028	8.7742	1	159400	+		29658	16760	24336	24363	32907	32907					0.1356839099598801
LFSFALAF	8	Unmodified	_LFSFALAF_					0	0	0		tr|A0A553SF76|A0A553SF76_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08385PE=3SV=1	tr|A0A553SF76|A0A553SF76_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08385PE=3SV=1	tr|A0A553SF76|A0A553SF76_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08385PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.2857360839844	2	458.252372	914.49019	-1.0532	-0.00048263	-1.0471	-0.00047983	-2.1003	-0.00096246	458.2505790216747	95.238	0.7011	92.77	92.41	93.111	-2.4685					22	13	3	0	0	0	0.028476	1	8334	8334		28.254	0	1	32154			29659	33002	24337	24364	32908	32908					0.029524893624625292
LFSFAVYPLK	10	Unmodified	_LFSFAVYPLK_					0	0	0			REV__ENSG00000124249|ENST00000372861|KCNK15	REV__ENSG00000124249|ENST00000372861|KCNK15	MSMS	OvCa99_classI_Rep5	1	592.842529296875	2	592.839342	1183.66413	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.46	1	129.46	128.96	129.96	0								0	0	0	0.14342	1	15013	15013		51.335	5.3632	1		+		29660	18678	24338	24365	32909	32909					0.07964650067924595
LFSGQPLII	9	Unmodified	_LFSGQPLII_					0	0	0		nc|ENSG00000188687|Q9BY07-6|SLC4A5;nc|ENSG00000188687|Q9BY07-5|SLC4A5;nc|ENSG00000188687|Q9BY07-4|SLC4A5;nc|ENSG00000188687|Q9BY07-8|SLC4A5;ENST00000451608.2_1_2:74452054-74542150:-|nuORF;ENSG00000188687|ENST00000394019|SLC4A5;nc|ENSG00000188687|Q9BY07|SLC4A5;nc|ENSG00000188687|Q9BY07-2|SLC4A5;ENST00000483195.5_1_2:74452054-74512997:-|nuORF;nc|ENSG00000188687|Q9BY07-7|SLC4A5	nc|ENSG00000188687|Q9BY07-6|SLC4A5	nc|ENSG00000188687|Q9BY07-6|SLC4A5	MULTI-MSMS	OvCa99_classI_Rep5	1	494.29913330078125	2	494.29731	986.580068	0.86069	0.00042543	1.365	0.00067472	2.2257	0.0011002	494.2978651500202	139.4	0.66707	139.4	139.07	139.74	0					28	13	3	0	0	0	0.42676	1	16279	16279		49.442	5.3247	1	114740			29661	8493	24339	24366	32910	32910					0.08624118971033568
LFSGVIATILF	11	Unmodified	_LFSGVIATILF_					0	0	0		tr|A0A553SM04|A0A553SM04_NIACIMultidrugresistanceeffluxtransporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21675PE=4SV=1	tr|A0A553SM04|A0A553SM04_NIACIMultidrugresistanceeffluxtransporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21675PE=4SV=1	tr|A0A553SM04|A0A553SM04_NIACIMultidrugresistanceeffluxtransporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21675PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	590.854736328125	2	590.85245	1179.69035	1.3638	0.00080578	-2.409	-0.0014233	-1.0452	-0.00061756	590.8508903636731	149.63	1.5921	149.63	149.4	150.99	0					86	31	5	0	0	0	0.28332	2	17535	17535;17561		69.628	17.469	1	2278800			29662	33778	24340	24367	32911;32912	32911					0.10768919239421848
LFSGWCLLL	9	Unmodified	_LFSGWCLLL_					0	0	0			REV__GPR179|p.W1960Cfs*10|1|0.96|ENSG00000277399|chr17:38327664-38327689|CGGAATCTGCTGGGGCAGTGGTCTCC/-|frameshift_variant	REV__GPR179|p.W1960Cfs*10|1|0.96|ENSG00000277399|chr17:38327664-38327689|CGGAATCTGCTGGGGCAGTGGTCTCC/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	526.2880249023438	2	526.285889	1050.55722	1.6308	0.00085829	2.9509	0.001553	4.5817	0.0024113	526.2873091994309	110.91	0.88719	110.91	110.49	111.38	0					57	19	5	0	0	0	0.1595	1	12589	12589		83.287	11.41	1	1572200	+		29663	23632	24341	24368	32913	32913					0.03396776581917038
LFSGWCLLL	9	Unmodified	_LFSGWCLLL_					0	0	0			REV__GPR179|p.W1960Cfs*10|1|0.96|ENSG00000277399|chr17:38327664-38327689|CGGAATCTGCTGGGGCAGTGGTCTCC/-|frameshift_variant	REV__GPR179|p.W1960Cfs*10|1|0.96|ENSG00000277399|chr17:38327664-38327689|CGGAATCTGCTGGGGCAGTGGTCTCC/-|frameshift_variant	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	526.285889	1050.55722	1.6308	0.00085829	2.9509	0.001553	4.5817	0.0024113	526.2873091994309	110.91	0.88719	110.91	110.49	111.38	0	0	0	NaN	83.287	57	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1572200	+		29664	23632	24341	24368							0.03396776581917038
LFSIIIYSV	9	Unmodified	_LFSIIIYSV_					0	0	0			REV__SCN2A|p.D1935Vfs*2|1|0.11|ENSG00000136531|chr2:165389608-165389609|-/GTTT|frameshift_variant;REV__nc|ENSG00000144285|P35498-3|SCN1A;REV__nc|ENSG00000153253|Q9NY46-4|SCN3A;REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A;REV__nc|ENSG00000168356|Q9UI33-3|SCN11A	REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.35546875	2	527.812793	1053.61103	2.0035	0.0010575	3.6098	0.0019053	5.6133	0.0029628	528.3144154954471	135.69	0.54327	134.14	133.81	134.35	-1.5437					15	10	2	0	0	0	0.027462	1	13142	13142		38.806	27.295	1	7382.5	+		29665	19391;22872;19900;20333;21367	24342	24369	32914	32914					0.08637272285272957
LFSIKGLGISA	11	Unmodified	_LFSIKGLGISA_					0	0	0			REV__tr|A0A553STQ3|A0A553STQ3_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05435PE=3SV=1	REV__tr|A0A553STQ3|A0A553STQ3_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05435PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	553.3322143554688	2	553.334424	1104.6543	-2.8766	-0.0015917	-0.88706	-0.00049084	-3.7637	-0.0020826	553.3337794849177	152.41	1.17	152.18	151.83	153	-0.22696					55	23	3	0	0	0	0.72466	1	15502	15502		19.997	2.5288	1	86016	+		29666	30996	24343	24370	32915	32915					0.10615462062582992
LFSIRKIHR	9	Unmodified	_LFSIRKIHR_					0	0	0		ENST00000375614.6_1_11:111431222-111431432:+|nuORF	ENST00000375614.6_1_11:111431222-111431432:+|nuORF	ENST00000375614.6_1_11:111431222-111431432:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	585.3114013671875	2	585.366924	1168.7193	0.11133	6.5171E-05	-3.3225	-0.0019449	-3.2112	-0.0018797	585.3644369846861	79.745	0.60337	78.05	77.767	78.37	-1.6951					18	11	2	0	0	0	0.027462	1	6744	6744		35.618	5.3006	1	24513			29667	11058	24344	24371	32916	32916					0.1416850137907204
LFSKAQTLEL	10	Unmodified	_LFSKAQTLEL_					0	0	0		ENSG00000136327|ENST00000258829|NKX2-8	ENSG00000136327|ENST00000258829|NKX2-8	ENSG00000136327|ENST00000258829|NKX2-8	MULTI-MSMS	OvCa99_classI_Rep5	1	575.3305053710938	2	575.329339	1148.64412	0.66562	0.00038295	1.0772	0.00061975	1.7428	0.0010027	575.3297889107141	124.08	0.91272	124.08	123.79	124.7	0					36	19	2	0	0	0	0.52162	1	14330	14330		51.528	0.1923	1	821410			29668	4483	24345	24372	32917	32917					0.07574854337326542
LFSKSLLII	9	Unmodified	_LFSKSLLII_					0	0	0			REV__tr|A0A7D6ZEP6|A0A7D6ZEP6_9CLOTStageIIIsporulationproteinAEOS=ClostridiumintestinaleOX=36845GN=spoIIIAEPE=4SV=1	REV__tr|A0A7D6ZEP6|A0A7D6ZEP6_9CLOTStageIIIsporulationproteinAEOS=ClostridiumintestinaleOX=36845GN=spoIIIAEPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	517.337646484375	2	517.336436	1032.65832	0.45016	0.00023288	1.7411	0.00090074	2.1913	0.0011336	517.3370934461182	141.77	0.99994	141.77	141.49	142.49	0					33	19	3	0	0	0	0.35444	1	16559	16559		56.721	9.0637	1	91097	+		29669	31948	24346	24373	32918	32918					0.14329551556306797
LFSKSLLII	9	Unmodified	_LFSKSLLII_					0	0	0			REV__tr|A0A7D6ZEP6|A0A7D6ZEP6_9CLOTStageIIIsporulationproteinAEOS=ClostridiumintestinaleOX=36845GN=spoIIIAEPE=4SV=1	REV__tr|A0A7D6ZEP6|A0A7D6ZEP6_9CLOTStageIIIsporulationproteinAEOS=ClostridiumintestinaleOX=36845GN=spoIIIAEPE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	517.336436	1032.65832	0.45016	0.00023288	1.7411	0.00090074	2.1913	0.0011336	517.3370934461182	141.77	0.99994	141.77	141.49	142.49	0	0	0	NaN	56.721	33	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91097	+		29670	31948	24346	24373							0.14329551556306797
LFSKTRLTI	9	Unmodified	_LFSKTRLTI_					0	0	0		tr|A0A553SJN9|A0A553SJN9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_17085PE=4SV=1	tr|A0A553SJN9|A0A553SJN9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_17085PE=4SV=1	tr|A0A553SJN9|A0A553SJN9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_17085PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	539.8317260742188	2	539.834591	1077.65463	-3.7173	-0.0020067	-0.65874	-0.00035561	-4.3761	-0.0023624	539.83416939196	149.54	1.4287	149.32	148.92	150.35	-0.22697					60	28	3	0	0	0	0.55588	1	15162	15162		37.159	5.2042	1	108190			29671	33522	24347	24374	32919	32919					0.11890881782414908
LFSLCWRIKAL	11	Unmodified	_LFSLCWRIKAL_					0	0	0		ENST00000508736.1_1_12:49994556-49994850:+|nuORF	ENST00000508736.1_1_12:49994556-49994850:+|nuORF	ENST00000508736.1_1_12:49994556-49994850:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	450.5971374511719	3	450.596926	1348.76895	2.0912	0.00094228	0.26404	0.00011898	2.3552	0.0010613	450.59700338359727	73.597	2.3004	71.197	70.687	72.988	-2.3999					152	43	5	0	0	0	0.6112	1	6030	6030		43.651	0.23225	1	946140			29672	12948	24348	24375	32920	32920					0.10851448272865127
LFSLCWRIKAL	11	Unmodified	_LFSLCWRIKAL_					0	0	0		ENST00000508736.1_1_12:49994556-49994850:+|nuORF	ENST00000508736.1_1_12:49994556-49994850:+|nuORF	ENST00000508736.1_1_12:49994556-49994850:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.5989074707031	3	450.596926	1348.76895	0.73789	0.00033249	1.2191	0.00054933	1.957	0.00088182	450.5974910542259	75.612	2.2066	72.673	72.255	74.462	-2.9389					135	45	5	0	0	0	0.5804	1	6002	6002		46.457	1.4346	1	959650			29673	12948	24348	24375	32921	32921					0.10851448272865127
LFSLIVGLLTY	11	Unmodified	_LFSLIVGLLTY_					0	0	0		ENSG00000127948|ENST00000461988|POR;ENST00000471238.5_1_7:75583310-75608939:+|nuORF	ENSG00000127948|ENST00000461988|POR	ENSG00000127948|ENST00000461988|POR	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8699340820312	2	619.873382	1237.73221	-2.7857	-0.0017268	-3.6209	-0.0022445	-6.4066	-0.0039713	619.8709153162803	147.4	3.9416	146.45	144.36	148.3	-0.9512					241	78	4	0	0	0	0.72459	1	12530	12530		20.947	0.95016	1	225770			29674	3853	24349	24376	32922	32922					0.12285474927966789
LFSLLFRISSL	11	Unmodified	_LFSLLFRISSL_					0	0	0		tr|A0A553SIT2|A0A553SIT2_NIACICDP-glycerolglycerophosphotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15470PE=3SV=1	tr|A0A553SIT2|A0A553SIT2_NIACICDP-glycerolglycerophosphotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15470PE=3SV=1	tr|A0A553SIT2|A0A553SIT2_NIACICDP-glycerolglycerophosphotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15470PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	432.5958557128906	3	432.595579	1294.76491	-0.63357	-0.00027408	-1.6744	-0.00072432	-2.3079	-0.0009984	432.5948373666812	57.879	2.8015	55.087	54.625	57.426	-2.792					168	54	5	0	0	0	0.66539	1	4140	4140		38.714	2.3964	1	528810			29675	33420	24350	24377	32923	32923					0.12931682050816562
LFSLLHFL	8	Unmodified	_LFSLLHFL_					0	0	0		ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8;ENST00000569225.5_1_16:53269177-53281416:+|nuORF;ENSG00000171316|ENST00000423902|CHD7;CHD7|p.S2860Kfs*9|1|0.3|ENSG00000171316|chr8:60865513-60865514|-/A|frameshift_variant;nc|ENSG00000177200|Q3L8U1-2|CHD9;nc|ENSG00000177200|Q3L8U1-3|CHD9;ENSG00000177200|ENST00000447540|CHD9	ENSG00000100888|ENST00000646647|CHD8;ENSG00000171316|ENST00000423902|CHD7;nc|ENSG00000177200|Q3L8U1-2|CHD9	ENSG00000100888|ENST00000646647|CHD8	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.27227783203125	2	495.294571	988.574589	1.5611	0.00077319	-4.0419	-0.0020019	-2.4808	-0.0012287	495.2925931703481	126.67	0.35489	126.67	126.56	126.91	0					11	7	2	0	0	0	0.028476	1	14669	14669		29.842	8.1392	1	26640			29676	2115;231;7667	24351	24378	32924	32924					0.07984440179222929
LFSLLTAS	8	Unmodified	_LFSLLTAS_					0	0	0			REV__ENST00000594954.5_1_19:35820289-35820811:+|nuORF	REV__ENST00000594954.5_1_19:35820289-35820811:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	426.2461853027344	2	426.247286	850.48002	-0.93249	-0.00039747	-2.0488	-0.0008733	-2.9813	-0.0012708	426.2463036759244	138.33	1.7168	138.1	137.59	139.3	-0.22696					83	34	3	0	0	0	0.74679	1	13785	13785		28.254	0	1	161940	+		29677	27987	24352	24379	32925	32925					0.048798816372254805
LFSLPQLRA	9	Unmodified	_LFSLPQLRA_					0	0	0			REV__ENST00000514442.5_1_5:149772876-149773050:+|nuORF	REV__ENST00000514442.5_1_5:149772876-149773050:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	522.8115844726562	2	522.813659	1043.61277	0.70603	0.00036912	0.12468	6.5185E-05	0.83071	0.00043431	522.8137547194412	119.88	0.68864	118.86	118.68	119.36	-1.0271					31	13	3	0	0	0	0.21231	1	9110	9110		74.255	5.4682	1	73516	+		29678	26983	24353	24380	32926	32926					0.09270326093883341
LFSPVNPLL	9	Unmodified	_LFSPVNPLL_					0	0	0			REV__ENST00000348520.10_2_14:104168248-104168920:+|nuORF	REV__ENST00000348520.10_2_14:104168248-104168920:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.2965393066406	2	500.29731	998.580068	-2.2878	-0.0011446	-2.366	-0.0011837	-4.6538	-0.0023283	500.29605874119767	88.517	1.1463	85.914	85.578	86.725	-2.6027					53	22	4	0	0	0	0.16562	2	7549	7549;7561		82.241	14.747	1	495300	+		29679	24710	24354	24381	32927;32928	32927					0.08072118971040254
LFSPVNPLL	9	Unmodified	_LFSPVNPLL_					0	0	0			REV__ENST00000348520.10_2_14:104168248-104168920:+|nuORF	REV__ENST00000348520.10_2_14:104168248-104168920:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	500.29731	998.580068	-2.2878	-0.0011446	-2.366	-0.0011837	-4.6538	-0.0023283	500.29605874119767	88.517	1.1463	85.914	85.578	86.725	-2.6027	0.02642	0.0012285	NaN	82.241	53	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	495300	+		29680	24710	24354	24381							0.08072118971040254
LFSRIIKVL	9	Unmodified	_LFSRIIKVL_					0	0	0			REV__ENST00000525250.5_1_11:821680-823850:+|nuORF	REV__ENST00000525250.5_1_11:821680-823850:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	544.865234375	2	544.863152	1087.71175	1.2989	0.00070775	0.63374	0.0003453	1.9327	0.0010531	544.8632509128331	111.63	1.9097	111.63	111.24	113.15	0					90	41	3	0	0	0	0.51865	1	12758	12758		40.778	0.20554	1	738120	+		29681	22019	24355	24382	32929	32929					0.1714034905880908
LFSSRVSLPL	10	Unmodified	_LFSSRVSLPL_					0	0	0			REV__ENST00000322030.12_1_9:131457086-131457191:+|nuORF	REV__ENST00000322030.12_1_9:131457086-131457191:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	559.8331909179688	2	559.832049	1117.64954	-1.0686	-0.00059823	-1.4282	-0.00079956	-2.4968	-0.0013978	559.8311600644105	103.76	1.1515	103.76	103.39	104.54	0					49	26	3	0	0	0	0.62299	1	11597	11597		39.253	2.8061	1	1953400	+		29682	24455	24356	24383	32930	32930					0.09542577919796713
LFSSRVSLPL	10	Unmodified	_LFSSRVSLPL_					0	0	0			REV__ENST00000322030.12_1_9:131457086-131457191:+|nuORF	REV__ENST00000322030.12_1_9:131457086-131457191:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	559.832049	1117.64954	-1.0686	-0.00059823	-1.4282	-0.00079956	-2.4968	-0.0013978	559.8311600644105	103.76	1.1515	103.76	103.39	104.54	0	0	0	NaN	39.253	49	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1953400	+		29683	24455	24356	24383							0.09542577919796713
LFSTDLSQL	9	Unmodified	_LFSTDLSQL_					0	0	0			REV__ENSG00000110921|ENST00000228510|MVK	REV__ENSG00000110921|ENST00000228510|MVK	MULTI-SECPEP	OvCa9_classI_Rep3	3	511.29217529296875	2	512.27149	1022.52843	-1.8694	-0.00095765	-0.96091	-0.00049225	-2.8303	-0.0014499	512.2706743869501	140.24	0.9364	139.21	138.69	139.63	-1.0339					27	18	3	0	0	0	0.027462	1	11516	11516		25.45	1.2474	1	126140	+		29684	18008	24357	24384	32931	32931					0.018063304864881502
LFSTDLSQL	9	Unmodified	_LFSTDLSQL_					0	0	0			REV__ENSG00000110921|ENST00000228510|MVK	REV__ENSG00000110921|ENST00000228510|MVK	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	512.27149	1022.52843	-1.0134	-0.00051915	-1.6723	-0.00085668	-2.6857	-0.0013758	512.2703093565345	139.72	1.0313	139.5	139.11	140.14	-0.22696	0.1446	-0.00016544	NaN	47.916	34	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57929	+		29685	18008	24357	24384							0.018063304864881502
LFSTIGAHG	9	Unmodified	_LFSTIGAHG_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2;MON2|p.T1057S|1|0.27|ENSG00000061987|chr12:62553133-62553133|A/T|missense_variant	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	451.2890319824219	2	451.74016	901.465767	1.9591	0.00088499	0.22866	0.00010329	2.1877	0.00098829	451.73932907624834	73.343	0.52461	70.943	70.792	71.317	-2.3999					11	9	2	0	0	0	0.027433	1	5952	5952		57.811	7.7867	1	6031.2			29686	13545	24358	24385	32932	32932					0.01109229208952911
LFSTNFDGRV	10	Unmodified	_LFSTNFDGRV_					0	0	0			REV__tr|A0A7D6ZJ05|A0A7D6ZJ05_9CLOTBiotincarboxylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09300PE=4SV=1	REV__tr|A0A7D6ZJ05|A0A7D6ZJ05_9CLOTBiotincarboxylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09300PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2889404296875	2	578.293288	1154.57202	-7.6021	-0.0043963	1.2846	0.00074285	-6.3176	-0.0036534	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.46756	3	14205	14100;14147;14205		58.782	7.4465	1	1429200	+		29687	32075	24359	24386	32933;32934;32935	32935					0.0009193998362206912
LFSTNLKTD	9	Unmodified	_LFSTNLKTD_					0	0	0		tr|A0A553SRA0|A0A553SRA0_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00690PE=3SV=1	tr|A0A553SRA0|A0A553SRA0_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00690PE=3SV=1	tr|A0A553SRA0|A0A553SRA0_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00690PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.77734375	2	519.776939	1037.53933	-0.42118	-0.00021892	-0.2172	-0.0001129	-0.63839	-0.00033182	519.7768446928638	98.627	1.3331	96.249	95.773	97.106	-2.3786					77	25	4	0	0	0	0.28934	1	8763	8763		64.207	0.901	1	423840			29688	34240	24360	24387	32936	32936					0.022057328607616
LFSVAFIVPIV	11	Unmodified	_LFSVAFIVPIV_					0	0	0			REV__tr|A0A553SH92|A0A553SH92_NIACIProteintranslocasesubunitSecYOS=NialliacirculansOX=1397GN=secYPE=3SV=1	REV__tr|A0A553SH92|A0A553SH92_NIACIProteintranslocasesubunitSecYOS=NialliacirculansOX=1397GN=secYPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	602.3499755859375	2	602.870643	1203.72673	-5.8528	-0.0035285	-1.407	-0.00084823	-7.2597	-0.0043767	602.8700879017039	163.23	1.0692	161.6	161.15	162.22	-1.6336					42	30	2	0	0	0	0.026311	1	16092	16092		10.866	0	1	8550.2	+		29689	29784	24361	24388	32937	32937					0.13301796136124722
LFSVPQGHLN	10	Unmodified	_LFSVPQGHLN_					0	0	0			REV__ENSG00000118520|ENST00000368087|ARG1;REV__ENSG00000081181|ENST00000261783|ARG2	REV__ENSG00000118520|ENST00000368087|ARG1	MULTI-MSMS	OvCa9_classI_Rep4_	4	556.2958984375	2	556.298373	1110.58219	-0.88867	-0.00049436	-1.365	-0.00075934	-2.2537	-0.0012537	556.297489303825	146.66	1.1662	145.22	144.86	146.02	-1.4357					51	22	3	0	0	0	0.6349	1	14460	14460		37.812	0.65241	1	134020	+		29690	18405;17067	24362	24389	32938	32938					0.03132547708855782
LFSVVSIFL	9	Unmodified	_LFSVVSIFL_					0	0	0			REV__ENSG00000127995|ENST00000297273|CASD1	REV__ENSG00000127995|ENST00000297273|CASD1	MULTI-MSMS	OvCa9_classI_Rep3	3	512.8052978515625	2	512.807511	1023.60047	0.48569	0.00024906	-4.4183	-0.0022657	-3.9326	-0.0020167	512.8051194113467	130.74	1.1749	129.61	129.32	130.49	-1.1249					50	23	3	0	0	0	0.44294	1	10385	10385		47.916	3.7988	1	153750	+		29691	18836	24363	24390	32939	32939					0.0896128963083811
LFSVYTCLY	9	Unmodified	_LFSVYTCLY_					0	0	0		L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|205|1|anti-sense	L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|205|1|anti-sense	L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|205|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	554.8282470703125	2	554.772811	1107.53107	0.42564	0.00023613	2.8226	0.0015659	3.2482	0.001802	554.7743646804689	64.423	1.1536	61.699	61.337	62.491	-2.7246					40	21	3	0	0	0	0.027462	1	4979	4979		31.955	3.7006	1	49677			29692	14562	24364	24391	32940	32940					-0.01839537380215006
LFSYQRSL	8	Unmodified	_LFSYQRSL_					0	0	0		ENST00000295404.9_1_19:50200719-50213852:+|nuORF;nc|ENSG00000169169|Q8TCG5-3|CPT1C;nc|ENSG00000169169|Q8TCG5-2|CPT1C;ENSG00000169169|ENST00000598293|CPT1C	ENST00000295404.9_1_19:50200719-50213852:+|nuORF	ENST00000295404.9_1_19:50200719-50213852:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.2748107910156	2	507.274367	1012.53418	-1.7431	-0.00088424	2.066	0.001048	0.32291	0.0001638	507.2753824037973	108.66	0.96454	106.94	106.72	107.68	-1.7256					42	18	3	0	0	0	0.67745	1	9970	9970		47.916	0	1	463130			29693	6981	24365	24392	32941	32941					0.028414737887942465
LFTAGLSKLQ	10	Unmodified	_LFTAGLSKLQ_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;STAB1|p.G1393Afs*11|1|0.46|ENSG00000010327|chr3:52516388-52516389|-/C|frameshift_variant;nc|ENSG00000010327|Q9NY15-2|STAB1;ENST00000481607.1_1_3:52529402-52542549:+|nuORF	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MSMS	OvCa99_classI_Rep5	1	539.319580078125	2	539.318774	1076.623	1.2108	0.00065303	0.15	8.0897E-05	1.3608	0.00073392	539.3187828868322	123.49	1.1039	123.49	123.04	124.15	0					66	23	5	0	0	0	0.34811	1	14218	14218		75.043	3.1658	1	1058300			29694	945	24366	24393	32942	32942					0.08774889028472899
LFTEDQLNI	9	Unmodified	_LFTEDQLNI_					0	0	0			REV__nc|ENSG00000089472|Q9BQS7-4|HEPH	REV__nc|ENSG00000089472|Q9BQS7-4|HEPH	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.7824096679688	2	546.782222	1091.54989	3.705	0.0020258	-3.7762	-0.0020648	-0.07122	-3.8942E-05	546.7800033528225	131.81	1.3099	130.31	129.98	131.29	-1.5015					60	25	3	0	0	0	0.48047	1	12690	12690		44.377	0.26039	1	73348	+		29695	17208	24367	24394	32943	32943					0.007777155151643456
LFTESHNLD	9	Unmodified	_LFTESHNLD_					0	0	0			REV__ENSG00000158470|ENST00000371711|B4GALT5	REV__ENSG00000158470|ENST00000371711|B4GALT5	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.2797241210938	2	538.256371	1074.49819	1.3384	0.00072042	-2.8923	-0.0015568	-1.5539	-0.00083639	538.2537528394721	138.69	0.23669	138.69	138.55	138.78	0					6	4	2	0	0	0	0.027462	1	16173	16173		14.865	3.3539	1	32384	+		29696	20565	24368	24395	32944	32944					-0.03608028178700806
LFTGVVPIL	9	Unmodified	_LFTGVVPIL_					0	0	0		CON__Q9U6Y5	CON__Q9U6Y5	CON__Q9U6Y5	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.80279541015625	2	479.802229	957.589904	-1.3034	-0.0006254	0.96991	0.00046536	-0.33354	-0.00016003	479.8025967080355	124.87	1.0308	123.48	123.23	124.26	-1.3908					45	19	3	0	0	0	0.44294	1	11848	11848		47.916	15.961	1	110960		+	29697	666	24369	24396	32945	32945					0.10941306976428677
LFTGVVPIL	9	Unmodified	_LFTGVVPIL_					0	0	0		CON__Q9U6Y5	CON__Q9U6Y5	CON__Q9U6Y5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	479.802229	957.589904	-0.038483	-1.8464E-05	0.035371	1.6971E-05	-0.003112	-1.4931E-06	479.80213003423125	123.59	1.0337	123.36	123.09	124.13	-0.23193	-0.070068	0.0006352	NaN	47.916	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91966		+	29698	666	24369	24396							0.10941306976428677
LFTGVVPIL	9	Unmodified	_LFTGVVPIL_					0	0	0		CON__Q9U6Y5	CON__Q9U6Y5	CON__Q9U6Y5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	479.802229	957.589904	1.807	0.00086702	-2.0576	-0.00098723	-0.25054	-0.00012021	479.80115966618376	124.51	1.3033	123.45	123.17	124.47	-1.0519	0.022601	-0.0013732	NaN	47.916	46	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117710		+	29699	666	24369	24396							0.10941306976428677
LFTLRGLEP	9	Unmodified	_LFTLRGLEP_					0	0	0			REV__ENSG00000064270|ENST00000262429|ATP2C2	REV__ENSG00000064270|ENST00000262429|ATP2C2	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.8538208007812	2	523.305667	1044.59678	1.3063	0.00068362	0.25279	0.00013228	1.5591	0.0008159	523.3055798811802	108.94	1.4477	108.94	108.41	109.86	0					49	32	3	0	0	0	0.027455	1	12364	12364		42.396	1.618	1	722580	+		29700	16767	24370	24397	32946	32946					0.07626619856978323
LFTLSYLLW	9	Unmodified	_LFTLSYLLW_					0	0	0			REV__ENST00000495893.6_1_3:169854440-169863287:-|nuORF	REV__ENST00000495893.6_1_3:169854440-169863287:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	578.2901611328125	2	578.326068	1154.63758	2.8638	0.0016562	2.4112	0.0013945	5.275	0.0030507	578.3272118115341	133.67	0.73526	132.14	131.95	132.69	-1.5257					31	14	3	0	0	0	0.027425	1	12908	12908		50.025	12.865	1	44925	+		29701	26751	24371	24398	32947	32947					0.06644961176607467
LFTNSRCP	8	Unmodified	_LFTNSRCP_					0	0	0			REV__nc|ENSG00000152822|Q13255-2|GRM1	REV__nc|ENSG00000152822|Q13255-2|GRM1	MULTI-MSMS	OvCa99_classI_Rep5	1	469.233154296875	2	469.231645	936.448736	-0.57182	-0.00026832	1.1823	0.00055479	0.61052	0.00028647	469.2318837615359	42.259	0.55772	42.259	41.982	42.539	0					30	12	4	0	0	0	0.56113	1	2706	2706		71.378	5.5747	1	1006700	+		29702	20307	24372	24399	32948	32948					-0.022030146685096952
LFTPKLPTF	9	Unmodified	_LFTPKLPTF_					0	0	0			REV__nc|ENSG00000079335|Q9UNH5-4|CDC14A	REV__nc|ENSG00000079335|Q9UNH5-4|CDC14A	MULTI-MSMS	OvCa99_classI_Rep5	1	532.31591796875	2	532.312961	1062.61137	1.3909	0.00074038	0.84453	0.00044955	2.2354	0.0011899	532.3130304409723	111.74	0.59656	111.74	111.51	112.11	0					23	12	2	0	0	0	0.14998	1	12708	12708		84.916	5.2029	1	396670	+		29703	28738	24373	24400	32949	32949					0.08256692005102195
LFTPSAVL	8	Unmodified	_LFTPSAVL_					0	0	0			REV__HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|43|3|sense	REV__HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|43|3|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	424.252197265625	2	424.249829	846.485105	1.6097	0.00068293	4.1755	0.0017715	5.7852	0.0024544	424.2513635004352	119.59	0.33472	119.59	119.5	119.83	0					13	8	2	0	0	0	0.56113	1	13728	13728		71.378	8.3995	1	116960	+		29704	28222	24374	24401	32950	32950					0.055721854998637355
LFTRGEGP	8	Unmodified	_LFTRGEGP_					0	0	0		nc|ENSG00000119326|Q9UBT7-3|CTNNAL1;nc|ENSG00000119326|Q9UBT7-2|CTNNAL1;ENSG00000119326|ENST00000325551|CTNNAL1	nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	MULTI-MSMS	OvCa99_classI_Rep5	1	438.7331237792969	2	438.732335	875.450116	3.1013	0.0013606	-0.48836	-0.00021426	2.6129	0.0011464	438.7319889069109	85.676	0.69849	85.676	85.334	86.033	0					36	16	3	0	0	0	0.68714	1	9014	9014		45.952	1.5748	1	849230			29705	3354	24375	24402	32951	32951					0.00740942691913915
LFTSLLLRPPP	11	Unmodified	_LFTSLLLRPPP_					0	0	0		nc|ENSG00000122126|Q01968-2|OCRL;ENSG00000122126|ENST00000371113|OCRL	nc|ENSG00000122126|Q01968-2|OCRL	nc|ENSG00000122126|Q01968-2|OCRL	MULTI-MSMS	OvCa99_classI_Rep5	1	627.3856811523438	2	627.384448	1252.75434	0.45246	0.00028386	-3.411	-0.00214	-2.9585	-0.0018561	627.381941059398	164.3	2.2705	164.3	163.48	165.75	0					225	84	3	0	0	0	0.70865	1	19136	19136		26.693	1.1189	1	178050			29706	3519	24376	24403	32952	32952					0.13807699396375028
LFTSSFVSFV	10	Unmodified	_LFTSSFVSFV_					0	0	0			REV__ENST00000487416.6_1_19:16755566-16755650:-|nuORF	REV__ENST00000487416.6_1_19:16755566-16755650:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.3286743164062	2	567.297507	1132.58046	0.36889	0.00020927	1.9653	0.0011149	2.3342	0.0013242	567.2986798014222	143.72	1.5661	142.28	141.68	143.25	-1.4427					47	29	2	0	0	0	0.027056	1	14182	14182		35.618	23.411	1	19213	+		29707	26602	24377	24404	32953	32953					0.019474939002293468
LFTWLISL	8	Unmodified	_LFTWLISL_					0	0	0		ENST00000334529.9_1_3:112182899-112183094:-|nuORF	ENST00000334529.9_1_3:112182899-112183094:-|nuORF	ENST00000334529.9_1_3:112182899-112183094:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.7902526855469	2	496.794404	991.574254	-0.79944	-0.00039716	-3.4439	-0.0017109	-4.2433	-0.002108	496.7925627435403	117.68	1.4165	116.33	116	117.42	-1.3444					61	26	4	0	0	0	0.67745	1	11021	11021		47.916	3.3845	1	167600			29708	10486	24378	24405	32954	32954					0.07813020459389008
LFTWLISL	8	Unmodified	_LFTWLISL_					0	0	0		ENST00000334529.9_1_3:112182899-112183094:-|nuORF	ENST00000334529.9_1_3:112182899-112183094:-|nuORF	ENST00000334529.9_1_3:112182899-112183094:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	496.794404	991.574254	-0.96056	-0.0004772	-3.0346	-0.0015076	-3.9951	-0.0019848	496.79271338755075	117.33	1.3378	116.3	115.99	117.33	-1.0324	0.024054	0.0003218	NaN	47.916	54	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129390			29709	10486	24378	24405							0.07813020459389008
LFVAFAIIGA	10	Unmodified	_LFVAFAIIGA_					0	0	0			REV__tr|A0A7D7A3W2|A0A7D7A3W2_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_23170PE=4SV=1	REV__tr|A0A7D7A3W2|A0A7D7A3W2_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_23170PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	511.3083801269531	2	511.307678	1020.6008	1.6393	0.00083819	1.5066	0.00077033	3.1459	0.0016085	511.3083391451546	133.32	0.78078	133.32	133.04	133.82	0					37	16	3	0	0	0	0.5794	1	15514	15514		44.531	7.5026	1	201300	+		29710	32390	24379	24406	32955	32955					0.09132709350694768
LFVAFAIIGA	10	Unmodified	_LFVAFAIIGA_					0	0	0			REV__tr|A0A7D7A3W2|A0A7D7A3W2_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_23170PE=4SV=1	REV__tr|A0A7D7A3W2|A0A7D7A3W2_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_23170PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.2708740234375	2	511.307678	1020.6008	1.6393	0.00083819	1.5066	0.00077033	3.1459	0.0016085	511.3083391451546	133.32	0.78078	133.32	133.04	133.82	0					37	16	3	0	0	0	0.026839	1	15539	15539		35.201	6.0512	1	201300	+		29711	32390	24379	24406	32956	32956					0.09132709350694768
LFVCFCMIL	9	Unmodified	_LFVCFCMIL_					0	0	0		ENST00000561385.5_1_15:50189347-50194027:-|nuORF	ENST00000561385.5_1_15:50189347-50194027:-|nuORF	ENST00000561385.5_1_15:50189347-50194027:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2830200195312	2	544.770702	1087.52685	1.6054	0.00087459	2.8287	0.001541	4.4342	0.0024156	544.7721964805252	82.995	0.97899	82.995	82.609	83.588	0					39	22	3	0	0	0	0.027462	1	8644	8644		49.211	16.398	1	1380000			29712	13753	24380	24407	32957	32957					-0.013410413991323367
LFVDADQIV	9	Unmodified	_LFVDADQIV_					0	0	0		nc|ENSG00000136731|Q9NYU2-2|UGGT1;ENSG00000136731|ENST00000259253|UGGT1	nc|ENSG00000136731|Q9NYU2-2|UGGT1	nc|ENSG00000136731|Q9NYU2-2|UGGT1	MULTI-MSMS	OvCa99_classI_Rep5	1	510.27630615234375	2	510.274032	1018.53351	2.0155	0.0010285	2.9037	0.0014817	4.9193	0.0025102	510.2753243044347	134.18	0.47438	134.18	133.86	134.34	0					16	9	2	0	0	0	0.28934	1	15618	15618		64.207	0	1	113370			29713	4509	24381	24408	32958	32958					0.024986343490809304
LFVFFNAPCP	10	Unmodified	_LFVFFNAPCP_					0	0	0			REV__AluYf1_dup91|chr1:154980524-154980825:+|1.0190371886422676|0.2721315892790703|1.9|429.0|22|3|anti-sense	REV__AluYf1_dup91|chr1:154980524-154980825:+|1.0190371886422676|0.2721315892790703|1.9|429.0|22|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.244140625	2	577.788795	1153.56304	0.34837	0.00020128	3.4305	0.0019821	3.7788	0.0021834	577.7907560239202	159.94	0.78354	159.94	159.57	160.35	0					27	15	3	0	0	0	0.026939	1	18754	18754		24.203	7.7296	1	60332	+		29714	15626	24382	24409	32959	32959					-0.007601249064236981
LFVFSLPFW	9	Unmodified	_LFVFSLPFW_					0	0	0		ENSG00000183813|ENST00000330953|CCR4;CCR4|p.I225Sfs*9|1|0.11|ENSG00000183813|chr3:32954095-32954096|-/G|frameshift_variant	ENSG00000183813|ENST00000330953|CCR4	ENSG00000183813|ENST00000330953|CCR4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	578.2903442382812	2	578.315503	1154.61645	-7.0203	-0.00406	-0.18293	-0.00010579	-7.2032	-0.0041657	578.3168847734524	160.39	0.71965	158.78	158.53	159.25	-1.6101					19	14	2	0	0	0	0.027425	1	15856	15856		71.378	3.8842	1	20267			29715	8110	24383	24410	32960	32960					0.04532995867748468
LFVFVNIVK	9	Unmodified	_LFVFVNIVK_					0	0	0			REV__ENST00000471297.1_1_10:112058551-112064550:-|nuORF	REV__ENST00000471297.1_1_10:112058551-112064550:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	539.3012084960938	2	539.836603	1077.65865	-0.56807	-0.00030667	-3.5627	-0.0019233	-4.1308	-0.0022299	539.8344642997426	96.06	0.99335	95.032	94.714	95.707	-1.0281					34	19	2	0	0	0	0.027326	1	8676	8676		76.847	18.065	1	33853	+		29716	26276	24384	24411	32961	32961					0.12292971276133358
LFVIGSMINQ	10	Unmodified	_LFVIGSMINQ_					0	0	0		tr|A0A553SRA3|A0A553SRA3_NIACIDUF624domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00700PE=4SV=1	tr|A0A553SRA3|A0A553SRA3_NIACIDUF624domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00700PE=4SV=1	tr|A0A553SRA3|A0A553SRA3_NIACIDUF624domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00700PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	561.306396484375	2	561.30481	1120.59507	3.1107	0.0017461	-1.5585	-0.00087479	1.5522	0.00087128	561.302635989903	107.91	0.8099	107.91	107.77	108.58	0					27	18	3	0	0	0	0.52439	1	12192	12192		51.193	1.6567	1	379040			29717	34242	24385	24412	32962	32962					0.03959242776704741
LFVKGFHPNL	10	Unmodified	_LFVKGFHPNL_					0	0	0			REV__tr|A0A7D6ZVT9|A0A7D6ZVT9_9CLOTAcetateuptaketransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_15045PE=3SV=1	REV__tr|A0A7D6ZVT9|A0A7D6ZVT9_9CLOTAcetateuptaketransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_15045PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.8148803710938	2	586.334759	1170.65496	0.5867	0.000344	3.303	0.0019367	3.8897	0.0022807	586.3366673020979	132.14	0.27821	132.14	132.04	132.32	0					6	5	2	0	0	0	0.026639	1	15374	15374		44.117	0	1	36387	+		29718	32263	24386	24413	32963	32963					0.07646301502290953
LFVLDVSHN	9	Unmodified	_LFVLDVSHN_					0	0	0		nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B	nc|ENSG00000138802|O95487-2|SEC24B	nc|ENSG00000138802|O95487-2|SEC24B	MULTI-MSMS	OvCa9_classI_Rep3	3	522.2808227539062	2	522.279649	1042.54475	1.2282	0.00064146	1.6533	0.0008635	2.8815	0.001505	522.280355544447	122.07	1.5723	121.04	120.38	121.95	-1.0286					61	29	3	0	0	0	0.44568	1	9368	9368		47.657	1.7054	1	85010			29719	4735	24387	24414	32964	32964					0.025174564432290936
LFVLKADTV	9	Unmodified	_LFVLKADTV_					0	0	0		tr|A0A553SU31|A0A553SU31_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_06245PE=3SV=1	tr|A0A553SU31|A0A553SU31_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_06245PE=3SV=1	tr|A0A553SU31|A0A553SU31_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_06245PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.2825622558594	2	503.302593	1004.59063	-0.13894	-6.9928E-05	-0.98125	-0.00049386	-1.1202	-0.00056379	503.30178228928753	112.89	1.4392	111.44	110.8	112.24	-1.4461					51	28	3	0	0	0	0.027426	1	10488	10488		66.429	7.6473	1	108110			29720	34563	24388	24415	32965	32965					0.08852101625461728
LFVLVCDPI	9	Carbamidomethyl (C)	_LFVLVC(Carbamidomethyl (C))DPI_	LFVLVC(1)DPI		LFVLVC(83)DPI		0	1	0			REV__sp|Q6SW66|UL76_HCMVMProteinUL76OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL76PE=2SV=1	REV__sp|Q6SW66|UL76_HCMVMProteinUL76OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL76PE=2SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	538.2980346679688	2	538.296453	1074.57835	0.13311	7.1654E-05	3.354	0.0018055	3.4872	0.0018771	538.2979978262475	77.426	2.4453	75.073	74.104	76.549	-2.3527					75	47	2	0	0	0	0.1595	1	4040	4040		83.287	6.513	1	1860100	+		29721	29444	24389	24416	32966	32966	359				0.04404741890743935
LFVLVCDPI	9	Carbamidomethyl (C)	_LFVLVC(Carbamidomethyl (C))DPI_					0	1	0			REV__sp|Q6SW66|UL76_HCMVMProteinUL76OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL76PE=2SV=1	REV__sp|Q6SW66|UL76_HCMVMProteinUL76OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL76PE=2SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	538.296453	1074.57835	-1.231	-0.00066266	4.7624	0.0025636	3.5314	0.0019009	538.2987346618036	77.232	1.774	75.442	74.741	76.515	-1.7894	0.13218	0.00079905	NaN	83.287	63	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	628420	+		29722	29444	24389	24416			359				0.04404741890743935
LFVNDSQLFL	10	Unmodified	_LFVNDSQLFL_					0	0	0			REV__ENST00000578419.5_1_17:77078294-77078564:+|nuORF	REV__ENST00000578419.5_1_17:77078294-77078564:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	598.3228149414062	2	598.321514	1194.62847	1.6333	0.00097723	-0.73097	-0.00043735	0.90231	0.00053987	598.3209997459084	130.86	0.82825	129.74	129.41	130.24	-1.1249					32	16	3	0	0	0	0.66721	1	10411	10411		34.173	6.0911	1	51292	+		29723	27802	24390	24417	32967	32967					0.03894567820270822
LFVNYKLK	8	Unmodified	_LFVNYKLK_					0	0	0		ENSG00000049656|ENST00000320895|CLPTM1L;nc|ENSG00000049656|Q96KA5-2|CLPTM1L;ENST00000511268.6_1_5:1320729-1323921:-|nuORF;ENST00000506641.5_1_5:1318486-1326363:-|nuORF	ENSG00000049656|ENST00000320895|CLPTM1L	ENSG00000049656|ENST00000320895|CLPTM1L	MULTI-MSMS	OvCa9_classI_Rep2	2	512.8104248046875	2	512.813128	1023.6117	-1.8058	-0.00092605	-2.7599	-0.0014153	-4.5657	-0.0023414	512.811598612442	62.701	1.4465	59.957	59.449	60.895	-2.7444					78	27	4	0	0	0	0.57878	1	4702	4702		68.485	0.99103	1	1076400			29724	1172	24391	24418	32968	32968					0.100841117249729
LFVPDNVLK	9	Unmodified	_LFVPDNVLK_					0	0	0		nc|ENSG00000177614|Q8N414-2|PGBD5;ENSG00000177614|ENST00000391860|PGBD5	nc|ENSG00000177614|Q8N414-2|PGBD5	nc|ENSG00000177614|Q8N414-2|PGBD5	MSMS	OvCa9_classI_Rep3	3	522.8070068359375	2	522.808042	1043.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.61	1	118.59	118.09	119.09	-1.0271								0	0	0	0.16997	1	9079	9079		51.335	8.9393	1				29725	7700	24392	24419	32969	32969					0.08147503999748551
LFVPDNVLK	9	Unmodified	_LFVPDNVLK_					0	0	0		nc|ENSG00000177614|Q8N414-2|PGBD5;ENSG00000177614|ENST00000391860|PGBD5	nc|ENSG00000177614|Q8N414-2|PGBD5	nc|ENSG00000177614|Q8N414-2|PGBD5	MSMS	OvCa9_classI_Rep4_	4	522.8096923828125	2	522.808042	1043.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.08	1	118.73	118.23	119.23	-1.3444								0	0	0	0.17442	1	11285	11285		42.396	5.3677	1				29726	7700	24392	24419	32970	32970					0.08147503999748551
LFVRAVGPI	9	Unmodified	_LFVRAVGPI_					0	0	0		tr|A0A7D6VSU0|A0A7D6VSU0_9CLOTSulfate/molybdateABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14165PE=4SV=1	tr|A0A7D6VSU0|A0A7D6VSU0_9CLOTSulfate/molybdateABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14165PE=4SV=1	tr|A0A7D6VSU0|A0A7D6VSU0_9CLOTSulfate/molybdateABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14165PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	486.3049621582031	2	486.30547	970.596387	0.60247	0.00029298	-1.3637	-0.00066315	-0.76119	-0.00037017	486.3047947264386	124.97	2.7662	124.74	124.37	127.13	-0.2359					156	55	5	0	0	0	0.57242	2	12276	12276;12283		35.201	7.3185	1	3410600			29727	35056	24393	24420	32971;32972	32971					0.10991244927799926
LFVRDGPRL	9	Unmodified	_LFVRDGPRL_					0	0	0			REV__ENSG00000144810|ENST00000652472|COL8A1	REV__ENSG00000144810|ENST00000652472|COL8A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2474975585938	2	536.816733	1071.61891	1.119	0.00060069	-0.47751	-0.00025633	0.64148	0.00034436	536.8164362288227	114	0.58942	114	113.79	114.38	0					18	12	2	0	0	0	0.027433	1	13016	13016		71.296	0	1	288690	+		29728	19935	24394	24421	32973	32973					0.08596844325415987
LFVSAVTK	8	Unmodified	_LFVSAVTK_					0	0	0			REV__ENSG00000144891|ENST00000349243|AGTR1	REV__ENSG00000144891|ENST00000349243|AGTR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	433.74896240234375	2	432.763104	863.511654	0.35465	0.00015348	0.82976	0.00035909	1.1844	0.00051257	432.7634112836296	73.55	0.47478	73.55	73.317	73.792	0					19	11	2	0	0	0	0.028476	1	7199	7199		38.806	20.482	1	558140	+		29729	19942	24395	24422	32974	32974					0.07443874391174177
LFVSGLFAIL	10	Unmodified	_LFVSGLFAIL_					0	0	0			REV__tr|A0A7D6VPV6|A0A7D6VPV6_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13125PE=4SV=1	REV__tr|A0A7D6VPV6|A0A7D6VPV6_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13125PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3306274414062	2	540.328611	1078.64267	-1.5762	-0.00085169	4.4127	0.0023843	2.8364	0.0015326	540.3309156564876	138.68	4.2384	138.45	137.13	141.37	-0.22697					227	86	3	0	0	0	0.7759	1	13749	13749		21.96	4.5949	1	66382	+		29730	31281	24396	24423	32975	32975					0.1064926503922834
LFVSMIDRLP	10	Unmodified	_LFVSMIDRLP_					0	0	0			REV__ENST00000377086.5_1_1:10318566-10318689:+|nuORF	REV__ENST00000377086.5_1_1:10318566-10318689:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	596.3338012695312	2	595.833734	1189.65292	1.6941	0.0010094	-4.0337	-0.0024034	-2.3396	-0.001394	595.8320714049479	130.21	1.2397	130.21	129.72	130.96	0					67	25	4	0	0	0	0.72319	1	15085	15085		27.882	2.7563	1	431460	+		29731	25111	24397	24424	32976	32976					0.06567504702138649
LFVSTTIIVVF	11	Unmodified	_LFVSTTIIVVF_					0	0	0		nc|ENSG00000066230|P48764-2|SLC9A3;ENSG00000066230|ENST00000264938|SLC9A3	nc|ENSG00000066230|P48764-2|SLC9A3	nc|ENSG00000066230|P48764-2|SLC9A3	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8688354492188	2	619.873382	1237.73221	-3.1788	-0.0019704	-3.1308	-0.0019407	-6.3096	-0.0039111	619.8711859647292	147.21	3.9856	146.98	144.83	148.82	-0.22696					207	79	4	0	0	0	0.68684	1	14853	14853		34.173	9.9698	1	163200			29732	1346	24398	24425	32977	32977					0.12285474927944051
LFVVFFAIY	9	Unmodified	_LFVVFFAIY_					0	0	0		ENSG00000232382|ENST00000642057|OR5K1;ENSG00000231861|ENST00000427338|OR5K2;ENSG00000206536|ENST00000383695|OR5K3	ENSG00000232382|ENST00000642057|OR5K1	ENSG00000232382|ENST00000642057|OR5K1	MULTI-MSMS	OvCa9_classI_Rep3	3	559.8130493164062	2	559.817879	1117.6212	-0.97773	-0.00054735	-2.8227	-0.0015802	-3.8004	-0.0021276	559.8160584775942	134.25	2.5628	133.13	132.52	135.08	-1.1226					125	51	4	0	0	0	0.42921	1	10865	10865		49.211	0	1	225320			29733	9101	24399	24426	32978	32978					0.06709880010521374
LFVVFLALQ	9	Unmodified	_LFVVFLALQ_					0	0	0			REV__OR10R2|p.L232Vfs*20|1|0.18|ENSG00000198965|chr1:158480570-158480571|TC/-|frameshift_variant	REV__OR10R2|p.L232Vfs*20|1|0.18|ENSG00000198965|chr1:158480570-158480571|TC/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	524.7846069335938	2	525.323328	1048.6321	-0.7946	-0.00041742	-3.4452	-0.0018098	-4.2398	-0.0022272	525.321343703105	98.337	1.3896	96.578	96.11	97.5	-1.7595					74	26	4	0	0	0	0.027462	1	6608	6608		52.299	8.1824	1	376650	+		29734	23102	24400	24427	32979	32979					0.10973282384793492
LFVVFPLFL	9	Unmodified	_LFVVFPLFL_					0	0	0			REV__tr|A0A553SIX9|A0A553SIX9_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15705PE=4SV=1	REV__tr|A0A553SIX9|A0A553SIX9_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15705PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	547.8358154296875	2	547.836071	1093.65759	1.434	0.00078558	-3.5025	-0.0019188	-2.0685	-0.0011332	547.8339684252273	148.67	1.771	148.67	148.37	150.14	0					93	35	4	0	0	0	0.22187	1	17406	17406		72.62	6.1906	1	1096700	+		29735	29944	24401	24428	32980	32980					0.11450756907220239
LFVVGTLSIFT	11	Unmodified	_LFVVGTLSIFT_					0	0	0			REV__SLC7A13|p.S172T|1|0.4|ENSG00000164893|chr8:86229763-86229763|C/G|missense_variant	REV__SLC7A13|p.S172T|1|0.4|ENSG00000164893|chr8:86229763-86229763|C/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.3182373046875	2	598.849907	1195.68526	2.6825	0.0016064	1.2141	0.00072705	3.8966	0.0023335	598.8504916544623	108.03	0.21404	108.03	107.94	108.16	0					5	4	2	0	0	0	0.026056	1	12214	12214		27.882	2.4321	1	138540	+		29736	29371	24402	24429	32981	32981					0.0952461537679028
LFVVLPILF	9	Unmodified	_LFVVLPILF_					0	0	0			REV__tr|A0A7D6ZFU8|A0A7D6ZFU8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16545PE=4SV=1	REV__tr|A0A7D6ZFU8|A0A7D6ZFU8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16545PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.8064575195312	2	530.843897	1059.67324	-1.2282	-0.000652	-2.9321	-0.0015565	-4.1604	-0.0022085	530.8421060069172	94.158	0.83652	91.69	91.524	92.36	-2.4685					27	16	2	0	0	0	0.027462	1	8242	8242		14.664	0	1	35589	+		29737	31982	24403	24430	32982	32982					0.14579043424259908
LFVVLVEDR	9	Unmodified	_LFVVLVEDR_					0	0	0			REV__tr|A0A553SSM1|A0A553SSM1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03310PE=4SV=1	REV__tr|A0A553SSM1|A0A553SSM1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03310PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	545.31640625	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.62352	1	14248	14248		29.15	1.2673	1	202430	+		29738	30850	24404	24431	32983	32983					0.08222889028456848
LFVVSINKL	9	Unmodified	_LFVVSINKL_					0	0	0			REV__tr|A0A7D7A330|A0A7D7A330_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22105PE=4SV=1	REV__tr|A0A7D7A330|A0A7D7A330_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22105PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	516.8265380859375	2	516.826235	1031.63792	-0.15609	-8.0669E-05	-0.31866	-0.00016469	-0.47475	-0.00024536	516.8259433514464	94.159	3.732	92.264	91.95	95.682	-1.8956					143	73	3	0	0	0	0.33652	1	6095	6095		58.782	0	1	1619200	+		29739	32566	24405	24432	32984	32984					0.12336380896454102
LFVYFIWKRFN	11	Unmodified	_LFVYFIWKRFN_					0	0	0			REV__ENSG00000188064|ENST00000339464|WNT7B	REV__ENSG00000188064|ENST00000339464|WNT7B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.288818359375	3	511.618607	1531.83399	0.58438	0.00029898	2.8792	0.0014731	3.4636	0.001772	511.62016025609006	96.664	0.89961	94.239	93.862	94.761	-2.4256					32	17	2	0	0	0	0.026344	1	8544	8544		14.086	13.774	1	84848	+		29740	22688	24406	24433	32985	32985					0.08934766070342448
LFWLLKEYNVM	11	Unmodified	_LFWLLKEYNVM_					0	0	0			REV__ENSG00000162598|ENST00000371201|C1orf87	REV__ENSG00000162598|ENST00000371201|C1orf87	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.2403564453125	3	485.928341	1454.76319	-0.27621	-0.00013422	-0.052586	-2.5553E-05	-0.32879	-0.00015977	485.9282017066781	52.405	0.35191	52.405	52.214	52.566	0					19	7	4	0	0	0	0.026277	1	4086	4086		17.833	9.7988	1	283530	+		29741	20751	24407	24434	32986	32986					0.054003049705215744
LFWLYVLS	8	Unmodified	_LFWLYVLS_					0	0	0			REV__ENST00000487315.1_1_10:99213348-99216645:+|nuORF	REV__ENST00000487315.1_1_10:99213348-99216645:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.2713623046875	2	520.794404	1039.57425	-0.54108	-0.00028179	-0.030825	-1.6053E-05	-0.57191	-0.00029785	521.2962640792119	105.2	1.2058	103.18	102.85	104.05	-2.0161					30	23	2	0	0	0	0.028476	1	9612	9612		65.897	21.781	1	38915	+		29742	21608	24408	24435	32987	32987					0.0560502045937028
LFWNPGVLI	9	Unmodified	_LFWNPGVLI_					0	0	0		ENSG00000138375|ENST00000357276|SMARCAL1	ENSG00000138375|ENST00000357276|SMARCAL1	ENSG00000138375|ENST00000357276|SMARCAL1	MULTI-MSMS	OvCa9_classI_Rep3	3	529.8026733398438	2	529.805303	1057.59605	0.35582	0.00018852	0.74604	0.00039525	1.1019	0.00058377	529.8030255036192	105.38	2.0148	104.03	103.57	105.59	-1.3482					144	38	5	0	0	0	0.13154	1	7360	7360		88.643	6.4024	1	4513200			29743	4679	24409	24436	32988	32988					0.06955825207955968
LFWVCLFL	8	Unmodified	_LFWVCLFL_					0	0	0			REV__ENST00000464307.5_1_11:64373997-64374309:-|nuORF	REV__ENST00000464307.5_1_11:64373997-64374309:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	520.7857666015625	2	520.785524	1039.5565	0.72045	0.0003752	-1.1058	-0.00057588	-0.38534	-0.00020068	520.784844937667	143.67	2.5589	143.67	142.09	144.64	0					90	51	4	0	0	0	0.69862	1	16792	16792		43.626	13.122	1	262760	+		29744	26146	24410	24437	32989	32989					0.03829981932858573
LFYAVDVDD	9	Unmodified	_LFYAVDVDD_					0	0	0		nc|ENSG00000013561|Q9UBS8-2|RNF14;ENSG00000013561|ENST00000394520|RNF14	nc|ENSG00000013561|Q9UBS8-2|RNF14	nc|ENSG00000013561|Q9UBS8-2|RNF14	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3177490234375	2	528.747847	1055.48114	-0.52575	-0.00027799	3.3777	0.0017859	2.8519	0.001508	529.2512186916117	67.799	0.4733	67.799	67.604	68.077	0					13	11	2	0	0	0	0.027462	1	6337	6337		38.806	8.3025	1	101020			29745	989	24411	24438	32990	32990					-0.04437948784516266
LFYCTIDV	8	Carbamidomethyl (C)	_LFYC(Carbamidomethyl (C))TIDV_	LFYC(1)TIDV		LFYC(42)TIDV		0	1	0			REV__nc|ENSG00000149294|P13591-1|NCAM1	REV__nc|ENSG00000149294|P13591-1|NCAM1	MULTI-MSMS	OvCa9_classI_Rep3	3	515.75146484375	2	515.749336	1029.48412	0.44781	0.00023096	4.1318	0.002131	4.5796	0.0023619	515.7513503783326	132.24	1.5304	131.12	130.79	132.32	-1.1249					72	30	3	0	0	0	0.7043	1	10586	10586		42.474	6.8562	1	308860	+		29746	20155	24412	24439	32991	32991	221				-0.029443969313661
LFYIANKI	8	Unmodified	_LFYIANKI_					0	0	0		tr|A0A7D6ZN53|A0A7D6ZN53_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14730PE=4SV=1	tr|A0A7D6ZN53|A0A7D6ZN53_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14730PE=4SV=1	tr|A0A7D6ZN53|A0A7D6ZN53_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14730PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.7650451660156	2	491.292028	980.569503	0.41713	0.00020493	-0.38433	-0.00018882	0.0328	1.6114E-05	491.29168079230965	101.49	0.55253	101.49	101.36	101.91	0					16	12	2	0	0	0	0.028476	1	11281	11281		37.028	0	1	281440			29747	35673	24413	24440	32992	32992					0.07844136316600725
LFYIDKILL	9	Unmodified	_LFYIDKILL_					0	0	0			REV__nc|ENSG00000138670|Q0VAM2-2|RASGEF1B	REV__nc|ENSG00000138670|Q0VAM2-2|RASGEF1B	MULTI-MSMS	OvCa99_classI_Rep5	1	569.349853515625	2	569.349543	1136.68453	0.89854	0.00051158	1.2671	0.0007214	2.1656	0.001233	569.3500902479316	142.06	1.8785	142.06	141.69	143.56	0					84	37	4	0	0	0	0.074342	1	16582	16582		104.75	10.74	1	928870	+		29748	19558	24414	24441	32993	32993					0.12165820727750543
LFYIINILVP	10	Unmodified	_LFYIINILVP_					0	0	0		nc|ENSG00000135902|Q07001-2|CHRND;ENSG00000135902|ENST00000258385|CHRND	nc|ENSG00000135902|Q07001-2|CHRND	nc|ENSG00000135902|Q07001-2|CHRND	MULTI-MSMS	OvCa9_classI_Rep3	3	602.875244140625	2	602.870643	1203.72673	2.2502	0.0013566	3.1947	0.001926	5.4448	0.0032825	602.8725233476795	104.38	1.6621	102.94	102.6	104.27	-1.4347					105	31	5	0	0	0	0.49049	1	7283	7283		55.504	4.3115	1	1606000			29749	4425	24415	24442	32994	32994					0.13301796136124722
LFYLFLFLF	9	Unmodified	_LFYLFLFLF_					0	0	0			REV__AluJb_dup38353|chr5:139531680-139531982:+|1.2453763328017513|0.0503640663441387|4.63|412.0|15|3|anti-sense	REV__AluJb_dup38353|chr5:139531680-139531982:+|1.2453763328017513|0.0503640663441387|4.63|412.0|15|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	612.3460083007812	2	611.849179	1221.6838	1.338	0.00081863	-1.2614	-0.00077181	0.076529	4.6824E-05	611.8480012250403	123.56	0.91865	123.56	123.14	124.06	0					57	19	4	0	0	0	0.27546	1	14263	14263		49.211	0	1	1304000	+		29750	15594	24416	24443	32995	32995					0.08183026078677358
LFYLHSLI	8	Unmodified	_LFYLHSLI_					0	0	0		nc|ENSG00000284873|A8MZH6|OOSP1	nc|ENSG00000284873|A8MZH6|OOSP1	nc|ENSG00000284873|A8MZH6|OOSP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	503.3255310058594	2	503.292028	1004.5695	0.051486	2.5913E-05	-3.8023	-0.0019137	-3.7508	-0.0018878	503.28994900919474	113.24	0.39585	113.11	112.97	113.36	-0.12174					12	7	2	0	0	0	0.028476	1	10738	10738		44.531	0	1	9564.1			29751	15381	24417	24444	32996	32996					0.06740136316614098
LFYNKENFQ	9	Unmodified	_LFYNKENFQ_					0	0	0		nc|ENSG00000166575|Q86UB9-2|TMEM135;ENSG00000166575|ENST00000305494|TMEM135	nc|ENSG00000166575|Q86UB9-2|TMEM135	nc|ENSG00000166575|Q86UB9-2|TMEM135	MULTI-MSMS	OvCa99_classI_Rep5	1	601.7991943359375	2	601.795663	1201.57677	-0.74105	-0.00044596	2.561	0.0015412	1.8199	0.0010952	601.7971882020773	65.924	1.348	65.924	65.271	66.619	0					71	33	4	0	0	0	0.22961	1	6097	6097		71.296	11.177	1	3866200			29752	6694	24418	24445	32997	32997					-0.01595175873626431
LFYPVEKI	8	Unmodified	_LFYPVEKI_					0	0	0			REV__tr|A0A7D6VY04|A0A7D6VY04_9CLOTDNAmismatchrepairproteinMutLOS=ClostridiumintestinaleOX=36845GN=mutLPE=3SV=1	REV__tr|A0A7D6VY04|A0A7D6VY04_9CLOTDNAmismatchrepairproteinMutLOS=ClostridiumintestinaleOX=36845GN=mutLPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	504.7922668457031	2	504.791861	1007.56917	0.37445	0.00018902	-3.4739	-0.0017536	-3.0994	-0.0015646	504.78984552464607	63.311	1.11	63.311	63.1	64.21	0					76	27	4	0	0	0	0.61758	1	5683	5683		60.294	4.7898	1	3098500	+		29753	31800	24419	24446	32998	32998					0.06568716596768809
LFYPVEKI	8	Unmodified	_LFYPVEKI_					0	0	0			REV__tr|A0A7D6VY04|A0A7D6VY04_9CLOTDNAmismatchrepairproteinMutLOS=ClostridiumintestinaleOX=36845GN=mutLPE=3SV=1	REV__tr|A0A7D6VY04|A0A7D6VY04_9CLOTDNAmismatchrepairproteinMutLOS=ClostridiumintestinaleOX=36845GN=mutLPE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	504.791861	1007.56917	0.37445	0.00018902	-3.4739	-0.0017536	-3.0994	-0.0015646	504.78984552464607	63.311	1.11	63.311	63.1	64.21	0	0	0	NaN	60.294	76	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3098500	+		29754	31800	24419	24446							0.06568716596768809
LFYRKPDF	8	Unmodified	_LFYRKPDF_					0	0	0		ENST00000371335.4_1_X:119570581-119570695:-|nuORF	ENST00000371335.4_1_X:119570581-119570695:-|nuORF	ENST00000371335.4_1_X:119570581-119570695:-|nuORF	MSMS	OvCa99_classI_Rep5	1	543.2933959960938	2	543.292559	1084.57057	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.8	1	128.8	128.3	129.3	0								0	0	0	0.30129	1	14929	14929		65.803	5.5092	1				29755	10952	24420	24447	32999	32999					0.031663506855238666
LFYVKLRWL	9	Unmodified	_LFYVKLRWL_					0	0	0		nc|ENSG00000168502|Q9Y4B5|MTCL1;ENSG00000168502|ENST00000695636|MTCL1;ENST00000520495.5_1_18:8785939-8809580:+|nuORF;nc|ENSG00000168502|Q9Y4B5-4|MTCL1;nc|ENSG00000168502|Q9Y4B5-2|MTCL1;nc|ENSG00000168502|Q9Y4B5-3|MTCL1	nc|ENSG00000168502|Q9Y4B5|MTCL1	nc|ENSG00000168502|Q9Y4B5|MTCL1	MULTI-MSMS	OvCa9_classI_Rep2	2	619.3720092773438	2	619.376426	1236.7383	-5.5105	-0.0034131	-1.8366	-0.0011376	-7.3471	-0.0045506	619.3751482919054	158.89	0.97121	158.66	158.38	159.35	-0.22696					37	18	3	0	0	0	0.68641	1	16134	16134		21.702	2.3424	1	60403			29756	6915	24421	24448	33000	33000					0.12940037950147598
LFYVRLVCLL	10	Unmodified	_LFYVRLVCLL_					0	0	0			REV__ENST00000232564.7_1_3:179118669-179118753:-|nuORF	REV__ENST00000232564.7_1_3:179118669-179118753:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8687744140625	2	619.87012	1237.72569	-3.8587	-0.0023919	2.7872	0.0017277	-1.0715	-0.00066418	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.74484	1	15566	15566		25.45	9.8084	1	492670	+		29757	23793	24422	24449	33001	33001					0.11633258495589871
LFYWEGID	8	Unmodified	_LFYWEGID_					0	0	0		tr|A0A553SUL2|A0A553SUL2_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00770PE=3SV=1	tr|A0A553SUL2|A0A553SUL2_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00770PE=3SV=1	tr|A0A553SUL2|A0A553SUL2_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00770PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.811767578125	2	521.74765	1041.48075	-0.83007	-0.00043309	-2.022	-0.001055	-2.852	-0.001488	521.7449891292147	67.923	0.24497	65.262	65.09	65.335	-2.661					6	4	2	0	0	0	0.028476	1	5325	5325		13.775	0	1	7512.1			29758	34620	24423	24450	33002	33002					-0.038333237137067044
LGACAWQVL	9	Unmodified	_LGACAWQVL_					0	0	0		ENST00000599531.1_1_19:46996416-46996824:-|nuORF	ENST00000599531.1_1_19:46996416-46996824:-|nuORF	ENST00000599531.1_1_19:46996416-46996824:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.75238037109375	2	480.752213	959.489873	-1.3934	-0.00066986	-2.8925	-0.0013906	-4.2859	-0.0020604	480.7509707644904	48.927	0.57302	45.819	45.451	46.024	-3.1077					34	10	4	0	0	0	0.39645	1	2731	2731		52.299	1.1065	1	2706600			29759	14212	24424	24451	33003	33003					0.008507463709747753
LGAEKQGTFC	10	Unmodified	_LGAEKQGTFC_					0	0	0		ENST00000467535.5_1_6:41880803-41888587:-|nuORF;nc|ENSG00000288721|Q9H944-2|MED20;ENSG00000124641|ENST00000265350|MED20	ENST00000467535.5_1_6:41880803-41888587:-|nuORF	ENST00000467535.5_1_6:41880803-41888587:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	527.2568969726562	2	527.255317	1052.49608	1.516	0.00079934	1.1342	0.00059801	2.6502	0.0013974	527.255945355817	135.1	3.2133	135.1	134.61	137.82	0					154	68	4	0	0	0	0.58067	1	15725	15725		44.377	4.319	1	1952100			29760	3667	24425	24452	33004	33004					-0.02806780188166158
LGAEPLEVDL	10	Unmodified	_LGAEPLEVDL_					0	0	0		ENSG00000112992|ENST00000344920|NNT;SUMF1-NNT|1|fusion;SUMF1-NNT|2|fusion;NNT-NIM1|1|fusion	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.2847290039062	2	528.284597	1054.55464	-0.42245	-0.00022318	0.6144	0.00032458	0.19194	0.0001014	528.284824410708	142.01	0.99675	140.54	140.24	141.23	-1.4627					54	18	4	0	0	0	0.66721	1	13940	13940		34.173	6.2903	1	263670			29761	2942	24426	24453	33005	33005					0.029545996579372513
LGAEPPVF	8	Unmodified	_LGAEPPVF_					0	0	0		nc|ENSG00000196642|Q3YEC7-3|RABL6	nc|ENSG00000196642|Q3YEC7-3|RABL6	nc|ENSG00000196642|Q3YEC7-3|RABL6	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.24383544921875	2	415.226354	828.438155	0.081459	3.3824E-05	0.70983	0.00029474	0.79129	0.00032857	415.2267137818045	36.225	0.41242	36.225	35.984	36.397	0					12	8	2	0	0	0	0.028476	1	1909	1909		13.775	6.085	1	55517			29762	15245	24427	24454	33006	33006					0.017073259487233372
LGAEYKAYPAP	11	Unmodified	_LGAEYKAYPAP_					0	0	0		ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	MULTI-MSMS	OvCa99_classI_Rep5	1	590.30419921875	2	590.305864	1178.59717	0.36147	0.00021338	-4.0648	-0.0023995	-3.7034	-0.0021861	590.3033607096477	46.046	1.0527	46.046	45.71	46.762	0					48	23	4	0	0	0	0.26031	1	3222	3222		71.877	1.0613	1	2162200			29763	1104	24428	24455	33007	33007					0.015019947861901528
LGAFSMFEN	9	Unmodified	_LGAFSMFEN_					0	0	0			REV__L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|184|3|sense	REV__L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|184|3|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.30255126953125	2	508.23131	1014.44807	-0.1745	-8.8687E-05	-3.9086	-0.0019865	-4.0831	-0.0020752	508.7298907734616	114.33	0.29616	114.22	114.11	114.4	-0.11777					6	5	2	0	0	0	0.027462	1	10890	10890		30.504	5.0535	1	4393.5	+		29764	28560	24429	24456	33008	33008					-0.05857854108216998
LGAGAGAP	8	Unmodified	_LGAGAGAP_					0	0	0			REV__ENST00000307102.9_1_15:66679176-66679506:+|nuORF	REV__ENST00000307102.9_1_15:66679176-66679506:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	613.8159790039062	1	613.330402	612.323125	1.0768	0.00066044	2.9547	0.0018122	4.0315	0.0024726	613.332066681877	124.35	0.82664	124.35	123.97	124.79	0					28	17	3	0	0	0	0.028476	1	14308	14308		24.504	0	1	200620	+		29765	24303	24430	24457	33009	33009					0.0014564153756282394
LGAGGREAVQP	11	Unmodified	_LGAGGREAVQP_					0	0	0		ENST00000497824.5_1_1:156374348-156399265:-|nuORF	ENST00000497824.5_1_1:156374348-156399265:-|nuORF	ENST00000497824.5_1_1:156374348-156399265:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.3184204101562	2	527.78563	1053.55671	0.87913	0.00046399	-0.92856	-0.00049008	-0.049429	-2.6088E-05	527.7851345797912	29.515	0.29232	26.806	26.682	26.975	-2.7097					8	5	2	0	0	0	0.026137	1	735	735		25.574	6.2141	1	9008.3			29766	12816	24431	24458	33010	33010					0.032070731863996116
LGAGIAQIL	9	Unmodified	_LGAGIAQIL_					0	0	0			REV__tr|A0A553SRK6|A0A553SRK6_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_01255PE=4SV=1	REV__tr|A0A553SRK6|A0A553SRK6_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_01255PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	428.267578125	2	428.268553	854.522553	-0.73394	-0.00031432	0.85228	0.000365	0.11834	5.0681E-05	428.26878401578796	74.16	2.8137	72.189	71.43	74.244	-1.9711					122	53	3	0	0	0	0.22913	1	6049	6049		71.378	0.082209	1	460940	+		29767	30740	24432	24459	33011	33011					0.08947276765479728
LGAGLAGLALP	11	Unmodified	_LGAGLAGLALP_					0	0	0		ENST00000556095.5_1_14:96830043-96830214:+|nuORF	ENST00000556095.5_1_14:96830043-96830214:+|nuORF	ENST00000556095.5_1_14:96830043-96830214:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.7722473144531	2	476.794935	951.575317	-0.22256	-0.00010612	0.74117	0.00035339	0.51861	0.00024727	476.79500508304216	72.96	0.93875	70.56	70.272	71.211	-2.3999					31	17	2	0	0	0	0.025361	1	5898	5898		50.025	9.4519	1	50290			29768	13654	24433	24460	33012	33012					0.09759234828266017
LGAGLAGLALP	11	Unmodified	_LGAGLAGLALP_					0	0	0		ENST00000556095.5_1_14:96830043-96830214:+|nuORF	ENST00000556095.5_1_14:96830043-96830214:+|nuORF	ENST00000556095.5_1_14:96830043-96830214:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	476.794935	951.575317	0.70427	0.00033579	-0.15997	-7.6272E-05	0.5443	0.00025952	476.79460039602833	73.132	0.9425	70.644	70.232	71.175	-2.4873	-0.076049	-0.00048897	NaN	50.025	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28722			29769	13654	24433	24460							0.09759234828266017
LGALDTHRR	9	Unmodified	_LGALDTHRR_					0	0	0		CON__Q32PI4	CON__Q32PI4	CON__Q32PI4	MULTI-MSMS	OvCa9_classI_Rep2	2	519.7936401367188	2	519.793789	1037.57303	-0.83173	-0.00043233	0.90792	0.00047193	0.076187	3.9601E-05	519.7941003158112	120.39	3.5079	120.22	119.69	123.2	-0.17137					148	70	4	0	0	0	0.27001	1	11580	11580		66.429	2.222	1	553870		+	29770	644	24434	24461	33013	33013					0.0557419914316597
LGALFWVL	8	Unmodified	_LGALFWVL_					0	0	0			REV__ENST00000443071.6_2_14:101010291-101034310:-|nuORF	REV__ENST00000443071.6_2_14:101010291-101034310:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	459.7745666503906	2	459.776014	917.537475	-2.4241	-0.0011145	1.4775	0.0006793	-0.94662	-0.00043523	459.77660984110486	36.567	1.1832	33.858	33.647	34.83	-2.7097					59	23	4	0	0	0	0.69862	1	1588	1588		43.626	0	1	232640	+		29771	25862	24435	24462	33014	33014					0.07540768633475636
LGALGENRVIT	11	Unmodified	_LGALGENRVIT_					0	0	0			REV__nc|ENSG00000145832|Q6ZT89-2|SLC25A48	REV__nc|ENSG00000145832|Q6ZT89-2|SLC25A48	MULTI-MSMS	OvCa9_classI_Rep4_	4	571.8330078125	2	571.830037	1141.64552	0.13015	7.4423E-05	3.6754	0.0021017	3.8056	0.0021761	571.8317743391519	122.43	1.2925	121.06	120.76	122.05	-1.3666					49	25	3	0	0	0	0.58572	1	11564	11564		45.972	7.1661	1	95079	+		29772	19985	24436	24463	33015	33015					0.08036488426091637
LGALGVAVAVA	11	Unmodified	_LGALGVAVAVA_					0	0	0		ENST00000492039.6_1_2:68374697-68384644:-|nuORF;ENST00000468984.1_1_2:68384284-68384644:-|nuORF	ENST00000492039.6_1_2:68374697-68384644:-|nuORF	ENST00000492039.6_1_2:68374697-68384644:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	470.79693603515625	2	470.794935	939.575317	0.721	0.00033944	-1.1739	-0.00055269	-0.45295	-0.00021325	470.79432724081363	79.671	2.137	77.331	76.802	78.939	-2.3399					94	41	5	0	0	0	0.41157	1	4335	4335		60.294	0.17569	1	1458600			29773	12339	24437	24464	33016	33016					0.10311234828270699
LGALSTNPL	9	Unmodified	_LGALSTNPL_					0	0	0			REV__ENST00000560587.1_1_15:57208945-57209149:-|nuORF	REV__ENST00000560587.1_1_15:57208945-57209149:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.23870849609375	2	443.255643	884.496732	3.0701	0.0013609	-0.76924	-0.00034097	2.3009	0.0010199	443.2550355797253	85.087	0.36922	85.087	84.923	85.292	0					14	8	2	0	0	0	0.027047	1	8922	8922		76.774	0	1	388170	+		29774	27622	24438	24465	33017	33017					0.049863825231796
LGAVARPAL	9	Unmodified	_LGAVARPAL_					0	0	0			REV__ENST00000228872.8_1_12:12870368-12870698:+|nuORF	REV__ENST00000228872.8_1_12:12870368-12870698:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	434.28692626953125	2	434.27417	866.533787	-1.2429	-0.00053975	3.9254	0.0017047	2.6825	0.0011649	434.2760332004634	84.67	2.1007	83.124	82.693	84.794	-1.5462					69	41	3	0	0	0	0.027326	1	7287	7287		65.803	5.5092	1	226430	+		29775	23777	24439	24466	33018	33018					0.09518098859598467
LGAVARPAL	9	Unmodified	_LGAVARPAL_					0	0	0			REV__ENST00000228872.8_1_12:12870368-12870698:+|nuORF	REV__ENST00000228872.8_1_12:12870368-12870698:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.2892150878906	2	434.27417	866.533787	1.93	0.00083815	-0.084747	-3.6803E-05	1.8453	0.00080134	434.27417777390997	85.876	0.94434	83.23	82.993	83.937	-2.6463					47	18	3	0	0	0	0.027441	1	7268	7268		55.504	10.973	1	320100	+		29776	23777	24439	24466	33019	33019					0.09518098859598467
LGAYFAVRPV	10	Unmodified	_LGAYFAVRPV_					0	0	0			REV__ENSG00000131094|ENST00000253407|C1QL1	REV__ENSG00000131094|ENST00000253407|C1QL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.8428344726562	2	546.813659	1091.61277	-0.35696	-0.00019519	-0.39605	-0.00021656	-0.753	-0.00041175	546.8137809169331	43.249	0.16874	43.249	43.143	43.312	0					5	3	2	0	0	0	0.027021	1	2832	2832		21.96	0	1	69140	+		29777	18997	24440	24467	33020	33020					0.0706232609388735
LGAYTIKY	8	Unmodified	_LGAYTIKY_					0	0	0		tr|A0A7D7A1Z8|A0A7D7A1Z8_9CLOTStageIIsporulationproteinMOS=ClostridiumintestinaleOX=36845GN=spoIIMPE=4SV=1	tr|A0A7D7A1Z8|A0A7D7A1Z8_9CLOTStageIIsporulationproteinMOS=ClostridiumintestinaleOX=36845GN=spoIIMPE=4SV=1	tr|A0A7D7A1Z8|A0A7D7A1Z8_9CLOTStageIIsporulationproteinMOS=ClostridiumintestinaleOX=36845GN=spoIIMPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.7480773925781	2	464.760561	927.506569	1.395	0.00064834	-2.9662	-0.0013786	-1.5712	-0.00073025	464.75933490315265	146.84	0.39316	146.84	146.62	147.01	0					12	7	2	0	0	0	0.028476	1	17170	17170		7.6903	0	1	34737			29778	36055	24441	24468	33021	33021					0.03991570528569355
LGCRRLHLL	9	Unmodified	_LGCRRLHLL_					0	0	0		ENST00000380548.8_1_9:18770742-18777100:+|nuORF	ENST00000380548.8_1_9:18770742-18777100:+|nuORF	ENST00000380548.8_1_9:18770742-18777100:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	540.82177734375	2	540.826578	1079.6386	-4.8647	-0.0026309	0.47844	0.00025876	-4.3862	-0.0023722	540.8266722246311	155.61	0.48663	155.38	155.16	155.64	-0.22696					29	17	2	0	0	0	0.70177	1	15857	15857		17.365	0	1	25176			29779	11148	24442	24469	33022	33022					0.10196897064543009
LGDIFDEGKW	10	Unmodified	_LGDIFDEGKW_					0	0	0		ENST00000592894.5_1_18:11886654-11897104:-|nuORF;nc|ENSG00000154889|Q53F39-5|MPPE1;ENST00000592447.5_1_18:11886825-11897263:-|nuORF;ENST00000589731.5_1_18:11886458-11897263:-|nuORF;nc|ENSG00000154889|Q53F39-4|MPPE1;nc|ENSG00000154889|Q53F39-2|MPPE1;nc|ENSG00000154889|Q53F39-3|MPPE1;ENSG00000154889|ENST00000588072|MPPE1;ENST00000592180.1_1_18:11893427-11896999:-|nuORF	ENST00000592894.5_1_18:11886654-11897104:-|nuORF	ENST00000592894.5_1_18:11886654-11897104:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	590.2876586914062	2	590.287671	1178.56079	1.2771	0.00075388	-1.2923	-0.00076284	-0.015184	-8.9629E-06	590.2866445859623	143.86	0.64343	143.86	143.61	144.26	0					20	12	2	0	0	0	0.49558	1	16810	16810		54.776	5.2403	1	483350			29780	5759	24443	24470	33023	33023					-0.02134882110522085
LGDQMWAPG	9	Unmodified	_LGDQMWAPG_					0	0	0			REV__ENST00000446716.5_1_2:220081206-220083551:-|nuORF	REV__ENST00000446716.5_1_2:220081206-220083551:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.7637023925781	2	487.723652	973.432752	-0.11766	-5.7386E-05	2.8448	0.0013875	2.7271	0.0013301	487.72502367944656	62.483	0.24772	59.026	58.913	59.16	-3.4577					6	4	2	0	0	0	0.027456	1	4347	4347		38.806	23.164	1	12440	+		29781	15550	24444	24471	33024	33024					-0.05502720905406022
LGDVRLGRV	9	Unmodified	_LGDVRLGRV_					0	0	0			REV__ENSG00000182118|ENST00000366654|FAM89A	REV__ENSG00000182118|ENST00000366654|FAM89A	MSMS	OvCa9_classI_Rep3	3	492.7994079589844	2	492.801083	983.587613	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.715	1	57.647	57.147	58.147	-3.0685								0	0	0	0.24998	1	2066	2066		18.324	0	1		+		29782	22263	24445	24472	33025	33025					0.09516271291317935
LGEFQNSVI	9	Unmodified	_LGEFQNSVI_					0	0	0			REV__tr|A0A553SRZ1|A0A553SRZ1_NIACIPLP-dependentaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_02090PE=3SV=1	REV__tr|A0A553SRZ1|A0A553SRZ1_NIACIPLP-dependentaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_02090PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.76177978515625	2	503.763832	1005.51311	-0.42187	-0.00021252	-2.852	-0.0014368	-3.2739	-0.0016493	503.76215909248856	39.078	1.1411	36.152	35.651	36.792	-2.9264					58	22	5	0	0	0	0.48324	1	1577	1577		44.117	3.3386	1	202820	+		29783	30780	24446	24473	33026	33026					0.010574636892783928
LGEILLKR	8	Unmodified	_LGEILLKR_					0	0	0			REV__ENSG00000205832|ENST00000444310|C16orf96	REV__ENSG00000205832|ENST00000444310|C16orf96	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.310546875	2	471.310752	940.606951	1.5017	0.00070778	-1.4762	-0.00069575	0.025522	1.2029E-05	471.3098936751472	34.387	2.0483	31.599	31.003	33.051	-2.7881					80	40	3	0	0	0	0.74229	1	1017	1017		30.504	0	1	114300	+		29784	23229	24447	24474	33027	33027					0.13427227582224077
LGEIVHLGGL	10	Unmodified	_LGEIVHLGGL_					0	0	0			REV__PLXNA3|p.I1452Rfs*8|1|0.29|ENSG00000130827|chrX:154468890-154468902|TTGATGCCATCAC/-|frameshift_variant	REV__PLXNA3|p.I1452Rfs*8|1|0.29|ENSG00000130827|chrX:154468890-154468902|TTGATGCCATCAC/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	504.29766845703125	2	504.297842	1006.58113	-1.2162	-0.00061332	0.82605	0.00041658	-0.39013	-0.00019674	504.29821756982153	103.35	3.6196	102.66	102.28	105.9	-0.68459					195	72	4	0	0	0	0.56767	1	9543	9543		45.952	0	1	812500	+		29785	18978	24448	24475	33028	33028					0.07810333339955378
LGELGIIIIN	10	Unmodified	_LGELGIIIIN_					0	0	0			REV__tr|A0A7D6ZS28|A0A7D6ZS28_9CLOTV-typeATPsynthasesubunitIOS=ClostridiumintestinaleOX=36845GN=HZF06_06130PE=3SV=1	REV__tr|A0A7D6ZS28|A0A7D6ZS28_9CLOTV-typeATPsynthasesubunitIOS=ClostridiumintestinaleOX=36845GN=HZF06_06130PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	527.8302612304688	2	527.828975	1053.6434	0.76755	0.00040513	1.2325	0.00065053	2	0.0010557	527.8294436673134	153.62	1.5316	153.62	153.3	154.83	0					63	30	4	0	0	0	0.39172	1	17989	17989		69.628	0	1	343370	+		29786	32173	24449	24476	33029	33029					0.1187205968831222
LGELVGKLV	9	Unmodified	_LGELVGKLV_					0	0	0			REV__tr|A0A553SK14|A0A553SK14_NIACIPhenylalanine--tRNAligasebetasubunitOS=NialliacirculansOX=1397GN=pheTPE=3SV=1	REV__tr|A0A553SK14|A0A553SK14_NIACIPhenylalanine--tRNAligasebetasubunitOS=NialliacirculansOX=1397GN=pheTPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	464.2968444824219	2	464.29731	926.580068	-1.0473	-0.00048624	0.92276	0.00042844	-0.12449	-5.7801E-05	464.29762801591284	102.69	1.6773	102.01	101.59	103.27	-0.68459					77	33	4	0	0	0	0.22621	1	9473	9473		71.877	0.58177	1	474550	+		29787	30065	24450	24477	33030	33030					0.11384118971045609
LGEPDRKES	9	Unmodified	_LGEPDRKES_					0	0	0			REV__chr1:53227144-53235577|197|20.35|0.5|5.34|-|1|MAGOH,MAGOH|2	REV__chr1:53227144-53235577|197|20.35|0.5|5.34|-|1|MAGOH,MAGOH|2	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7590942382812	2	515.76182	1029.50909	-0.91978	-0.00047439	-2.2845	-0.0011782	-3.2042	-0.0016526	515.7604705609308	127.55	1.5787	126.12	125.79	127.37	-1.4357					77	29	4	0	0	0	0.51865	1	12186	12186		40.778	1.972	1	263920	+		29788	15828	24451	24478	33031	33031					-0.00448625804438052
LGERAQDLP	9	Unmodified	_LGERAQDLP_					0	0	0		ENST00000504241.1_1_5:180622168-180622936:-|nuORF;nc|ENSG00000146054|Q9C029-3|TRIM7;nc|ENSG00000146054|Q9C029-4|TRIM7;ENSG00000146054|ENST00000274773|TRIM7	ENST00000504241.1_1_5:180622168-180622936:-|nuORF	ENST00000504241.1_1_5:180622168-180622936:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.3047180175781	2	499.766906	997.519259	-1.0438	-0.00052166	-1.7875	-0.00089333	-2.8313	-0.001415	499.76579106259265	95.838	0.9417	94.009	93.731	94.672	-1.8286					37	18	3	0	0	0	0.027462	1	6319	6319		39.253	3.6345	1	101180			29789	5261	24452	24479	33032	33032					0.020399819208023473
LGEVELGYL	9	Unmodified	_LGEVELGYL_					0	0	0		ENST00000560978.1_2_15:41689296-41694683:-|nuORF	ENST00000560978.1_2_15:41689296-41694683:-|nuORF	ENST00000560978.1_2_15:41689296-41694683:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	496.7672424316406	2	496.768583	991.522613	0.82898	0.00041181	1.6523	0.00082083	2.4813	0.0012326	496.7690164624019	153.92	0.72473	153.92	153.45	154.17	0					24	14	3	0	0	0	0.53957	1	18023	18023		38.806	0	1	63503			29790	13746	24453	24480	33033	33033					0.026512319748235313
LGFAALLIAV	10	Unmodified	_LGFAALLIAV_					0	0	0			REV__ENSG00000165215|ENST00000395145|CLDN3	REV__ENSG00000165215|ENST00000395145|CLDN3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.761474609375	2	494.315503	986.616454	3.5181	0.001739	-3.7023	-0.0018301	-0.18428	-9.1094E-05	494.31361118354084	133.73	0.88387	132.2	131.95	132.83	-1.5257					29	17	2	0	0	0	0.027007	1	12894	12894		12.959	0	1	26649	+		29791	21069	24454	24481	33034	33034					0.12260995867757174
LGFLRALPE	9	Unmodified	_LGFLRALPE_					0	0	0		NOD1|p.Q907Rfs*20|1|0.04|ENSG00000106100|chr7:30429444-30429444|G/-|frameshift_variant;nc|ENSG00000106100|Q9Y239-3|NOD1;ENSG00000106100|ENST00000222823|NOD1;NOD1|p.F591Dfs*24|1|0.19|ENSG00000106100|chr7:30451646-30451647|-/TC|frameshift_variant;NOD1|p.Q645Rfs*38|1|0.42|ENSG00000106100|chr7:30451484-30451484|G/-|frameshift_variant	NOD1|p.Q907Rfs*20|1|0.04|ENSG00000106100|chr7:30429444-30429444|G/-|frameshift_variant	NOD1|p.Q907Rfs*20|1|0.04|ENSG00000106100|chr7:30429444-30429444|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.3031005859375	2	508.300384	1014.58622	-0.76496	-0.00038883	3.3715	0.0017138	2.6066	0.0013249	508.30206090776204	91.63	3.1704	89.087	88.142	91.312	-2.5425					143	63	4	0	0	0	0.33652	1	7940	7940		58.782	3.2778	1	903450			29792	2528	24455	24482	33035	33035					0.07950637202543476
LGFNKNPIL	9	Unmodified	_LGFNKNPIL_					0	0	0			REV__tr|A0A553SRJ2|A0A553SRJ2_NIACISugarphosphateisomerase/epimeraseOS=NialliacirculansOX=1397GN=CEQ21_01220PE=4SV=1	REV__tr|A0A553SRJ2|A0A553SRJ2_NIACISugarphosphateisomerase/epimeraseOS=NialliacirculansOX=1397GN=CEQ21_01220PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	508.3007507324219	2	508.300384	1014.58622	1.47	0.00074719	0.99347	0.00050498	2.4634	0.0012522	508.3008087559392	88.242	3.2882	86.874	85.079	88.367	-1.3676					151	65	4	0	0	0	0.34496	1	7733	7733		57.811	1.0902	1	1204300	+		29793	30736	24456	24483	33036	33036					0.07950637202554844
LGFVLPLGI	9	Unmodified	_LGFVLPLGI_					0	0	0		ENSG00000182631|ENST00000330120|RXFP3	ENSG00000182631|ENST00000330120|RXFP3	ENSG00000182631|ENST00000330120|RXFP3	MULTI-MSMS	OvCa99_classI_Rep5	1	464.796875	2	464.796946	927.57934	1.8712	0.00086973	-4.0775	-0.0018952	-2.2063	-0.0010255	464.7949099497895	82.965	0.51216	82.965	82.736	83.249	0					28	11	3	0	0	0	0.32242	1	8605	8605		60.404	0.10967	1	1385800			29794	8016	24457	24484	33037	33037					0.11265324321982462
LGGAIAYFV	9	Unmodified	_LGGAIAYFV_					0	0	0			REV__ENSG00000137857|ENST00000389037|DUOX1	REV__ENSG00000137857|ENST00000389037|DUOX1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.2696228027344	2	455.755278	909.496004	0.011136	5.0753E-06	-4.3149	-0.0019665	-4.3037	-0.0019615	455.75317079272287	77.47	1.117	74.653	74.244	75.361	-2.8165					49	22	3	0	0	0	0.027462	1	6169	6169		29.842	0	1	422100	+		29795	19490	24458	24485	33038	33038					0.03763587874141194
LGGALIPVDLR	11	Unmodified	_LGGALIPVDLR_					0	0	0			REV__tr|A0A553SLK4|A0A553SLK4_NIACIGlyceroluptakeoperonantiterminatorregulatoryproteinOS=NialliacirculansOX=1397GN=CEQ21_20825PE=4SV=1	REV__tr|A0A553SLK4|A0A553SLK4_NIACIGlyceroluptakeoperonantiterminatorregulatoryproteinOS=NialliacirculansOX=1397GN=CEQ21_20825PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	562.3425903320312	2	562.345323	1122.67609	-2.9015	-0.0016316	-0.70711	-0.00039764	-3.6086	-0.0020293	562.3448419475409	142.33	4.504	141.32	140	144.5	-1.0106					205	90	3	0	0	0	0.71498	1	11816	11816		24.519	0	1	106680	+		29796	30234	24459	24486	33039	33039					0.11966266811100468
LGGASTWLGP	10	Unmodified	_LGGASTWLGP_					0	0	0		ENST00000543584.1_1_11:61615714-61616320:+|nuORF	ENST00000543584.1_1_11:61615714-61616320:+|nuORF	ENST00000543584.1_1_11:61615714-61616320:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.2911376953125	2	479.753267	957.491981	1.3896	0.00066668	-2.03	-0.00097392	-0.6404	-0.00030723	479.7533823075036	86.155	0.65166	83.509	83.091	83.743	-2.6463					18	12	2	0	0	0	0.026871	1	7239	7239		37.159	0	1	16710			29797	13496	24460	24487	33040	33040					0.011534983804381227
LGGAVSPGLL	10	Unmodified	_LGGAVSPGLL_					0	0	0			REV__ENST00000479851.1_1_22:32026643-32026745:-|nuORF	REV__ENST00000479851.1_1_22:32026643-32026745:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	441.78875732421875	2	442.26601	882.517468	-1.2178	-0.00053858	1.1021	0.00048741	-0.1157	-5.1171E-05	442.266295700418	66.002	0.58214	62.517	62.179	62.761	-3.4854					16	11	2	0	0	0	0.026552	1	4774	4774		44.117	25.792	1	25244	+		29798	26443	24461	24488	33041	33041					0.07150972902854846
LGGGAGRRR	9	Unmodified	_LGGGAGRRR_					0	0	0		ENST00000562648.2_1_16:743493-744282:-|nuORF	ENST00000562648.2_1_16:743493-744282:-|nuORF	ENST00000562648.2_1_16:743493-744282:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.287353515625	2	450.267742	898.52093	3.3754	0.0015198	2.2107	0.0009954	5.5861	0.0025152	450.2685859187867	89.643	0.41499	89.643	89.476	89.891	0					17	9	2	0	0	0	0.027417	1	9575	9575		55.504	0	1	463380			29799	13777	24463	24489	33042	33042					0.06761080520084306
LGGGGGGP	8	Unmodified	_LGGGGGGP_					0	0	0		ENST00000523547.1_1_8:117878983-117886562:-|nuORF	ENST00000523547.1_1_8:117878983-117886562:-|nuORF	ENST00000523547.1_1_8:117878983-117886562:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	571.8310546875	1	571.283451	570.276175	-0.018946	-1.0823E-05	-0.40472	-0.00023121	-0.42367	-0.00024204	571.2830011952967	61.873	0.8138	58.415	58.197	59.011	-3.4577					27	16	2	0	0	0	0.028476	1	4264	4264		1.619	0	1	47827			29800	13150	24464	24490	33043	33043					-0.0261521801356821
LGGGGPGP	8	Unmodified	_LGGGGPGP_					0	0	0			REV__ENST00000464108.5_1_9:130689570-130690941:-|nuORF	REV__ENST00000464108.5_1_9:130689570-130690941:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	611.3560180664062	1	611.314751	610.307475	-3.3814	-0.0020671	1.4535	0.00088853	-1.928	-0.0011786	611.3160927463588	151.71	0.55508	150.75	150.55	151.11	-0.95647					15	10	2	0	0	0	0.028476	1	12941	12941		16.705	0	1	7215.8	+		29801	25223	24465	24491	33044	33044					-0.013266449794741675
LGGGGRAVLR	10	Unmodified	_LGGGGRAVLR_					0	0	0			REV__ENST00000517870.1_1_1:53099041-53108627:+|nuORF	REV__ENST00000517870.1_1_1:53099041-53108627:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.7738037109375	2	478.293425	954.572297	-0.97942	-0.00046845	0.40505	0.00019373	-0.57437	-0.00027472	478.293445270548	72.989	1.0162	69.593	69.349	70.366	-3.3961					42	20	3	0	0	0	0.026665	1	5722	5722		51.335	0	1	95088	+		29802	27020	24466	24492	33045	33045					0.09319404494135597
LGGGGRAVLR	10	Unmodified	_LGGGGRAVLR_					0	0	0			REV__ENST00000517870.1_1_1:53099041-53108627:+|nuORF	REV__ENST00000517870.1_1_1:53099041-53108627:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	478.293425	954.572297	0.2215	0.00010594	-0.42131	-0.00020151	-0.19981	-9.5567E-05	478.29313227576137	71.781	1.0968	69.274	69.016	70.112	-2.5072	-0.13388	4.3563E-05	NaN	34.173	40	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92886	+		29803	27020	24466	24492							0.09319404494135597
LGGGGRAVLR	10	Unmodified	_LGGGGRAVLR_					0	0	0			REV__ENST00000517870.1_1_1:53099041-53108627:+|nuORF	REV__ENST00000517870.1_1_1:53099041-53108627:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	478.293425	954.572297	0.76878	0.0003677	-0.82925	-0.00039662	-0.060467	-2.8921E-05	478.2928703082562	71.959	1.3345	69.357	69.081	70.416	-2.6023	-0.050903	-0.00034667	NaN	34.173	51	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136720	+		29804	27020	24466	24492							0.09319404494135597
LGGGITIALI	10	Unmodified	_LGGGITIALI_					0	0	0			REV__tr|A0A7D7ABD8|A0A7D7ABD8_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_14955PE=3SV=1	REV__tr|A0A7D7ABD8|A0A7D7ABD8_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_14955PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.27996826171875	2	464.29731	926.580068	0.37375	0.00017353	-0.97899	-0.00045454	-0.60524	-0.00028101	464.2967337625479	84.28	0.45642	81.617	81.458	81.914	-2.6629					15	9	2	0	0	0	0.026871	1	7025	7025		29.15	0	1	82005	+		29805	32677	24467	24493	33046	33046					0.1138411897103424
LGGHKDAIVA	10	Unmodified	_LGGHKDAIVA_					0	0	0		ENSG00000241945|ENST00000291576|PWP2	ENSG00000241945|ENST00000291576|PWP2	ENSG00000241945|ENST00000291576|PWP2	MULTI-MSMS	OvCa99_classI_Rep5	1	490.7808837890625	2	490.779816	979.545079	-1.0227	-0.00050194	-0.023578	-1.1571E-05	-1.0463	-0.00051351	490.77984330918713	49.966	2.5345	49.966	49.679	52.214	0					117	58	4	0	0	0	0.56767	1	3803	3803		45.952	3.4775	1	38266000			29806	9358	24468	24494	33047	33047					0.054488761630864246
LGGIAFVAIK	10	Unmodified	_LGGIAFVAIK_					0	0	0		ENSG00000198060|ENST00000358935|MARCHF5	ENSG00000198060|ENST00000358935|MARCHF5	ENSG00000198060|ENST00000358935|MARCHF5	MULTI-MSMS	OvCa99_classI_Rep5	1	494.8144226074219	2	494.813128	987.611703	-1.0389	-0.00051405	0.7833	0.00038759	-0.25557	-0.00012646	494.8133214485731	70.269	0.76278	70.269	69.84	70.603	0					41	18	3	0	0	0	0.56767	1	6745	6745		45.952	5.3793	1	1327900			29807	8779	24469	24495	33048	33048					0.11740111724975577
LGGIKVKL	8	Unmodified	_LGGIKVKL_					0	0	0		nc|ENSG00000186191|P59827-2|BPIFB4;ENSG00000186191|ENST00000375483|BPIFB4	nc|ENSG00000186191|P59827-2|BPIFB4	nc|ENSG00000186191|P59827-2|BPIFB4	MULTI-MSMS	OvCa99_classI_Rep5	1	414.2907409667969	2	414.289288	826.564024	3.6496	0.001512	-0.78695	-0.00032603	2.8626	0.0011859	414.2888256294704	99.056	0.65007	99.056	98.838	99.488	0					36	15	3	0	0	0	0.054056	1	10925	10925		160.17	0	1	4377900			29808	8323	24470	24496	33049	33049					0.1438045752480548
LGGIKVKL	8	Unmodified	_LGGIKVKL_					0	0	0		nc|ENSG00000186191|P59827-2|BPIFB4;ENSG00000186191|ENST00000375483|BPIFB4	nc|ENSG00000186191|P59827-2|BPIFB4	nc|ENSG00000186191|P59827-2|BPIFB4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	414.289288	826.564024	-0.058411	-2.4199E-05	0.39178	0.00016231	0.33337	0.00013811	414.28937109045637	99.596	0.84293	98.766	98.567	99.41	-0.83051	-0.21584	0.0005482	NaN	160.17	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96330			29809	8323	24470	24496							0.1438045752480548
LGGIKVKL	8	Unmodified	_LGGIKVKL_					0	0	0		nc|ENSG00000186191|P59827-2|BPIFB4;ENSG00000186191|ENST00000375483|BPIFB4	nc|ENSG00000186191|P59827-2|BPIFB4	nc|ENSG00000186191|P59827-2|BPIFB4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	414.289288	826.564024	-0.014282	-5.9167E-06	-0.41365	-0.00017137	-0.42793	-0.00017729	414.2889928520614	100.72	0.86763	99.116	98.946	99.814	-1.6053	0.13438	-0.00011916	NaN	160.17	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91525			29810	8323	24470	24496							0.1438045752480548
LGGIKVKL	8	Unmodified	_LGGIKVKL_					0	0	0		nc|ENSG00000186191|P59827-2|BPIFB4;ENSG00000186191|ENST00000375483|BPIFB4	nc|ENSG00000186191|P59827-2|BPIFB4	nc|ENSG00000186191|P59827-2|BPIFB4	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	414.289288	826.564024	-0.34709	-0.0001438	-0.68703	-0.00028463	-1.0341	-0.00042843	414.2889156591317	101.25	0.62251	98.988	98.883	99.506	-2.2665	0.0064193	-0.00034567	NaN	160.17	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109480			29811	8323	24470	24496							0.1438045752480548
LGGLGNIFY	9	Unmodified	_LGGLGNIFY_					0	0	0		tr|A0A7D6VRD0|A0A7D6VRD0_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18940PE=4SV=1	tr|A0A7D6VRD0|A0A7D6VRD0_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18940PE=4SV=1	tr|A0A7D6VRD0|A0A7D6VRD0_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18940PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.7719421386719	2	477.258185	952.501818	0.042357	2.0215E-05	1.3782	0.00065777	1.4206	0.00067798	477.25834725844163	72.346	0.89032	69.839	69.433	70.323	-2.5071					35	16	3	0	0	0	0.027456	1	5904	5904		26.796	8.4717	1	28540			29812	34917	24471	24497	33050	33050					0.02366686385801131
LGGLGNIFY	9	Unmodified	_LGGLGNIFY_					0	0	0		tr|A0A7D6VRD0|A0A7D6VRD0_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18940PE=4SV=1	tr|A0A7D6VRD0|A0A7D6VRD0_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18940PE=4SV=1	tr|A0A7D6VRD0|A0A7D6VRD0_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18940PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	477.258185	952.501818	-1.1166	-0.00053292	-2.9781	-0.0014213	-4.0947	-0.0019542	477.25647561318954	70.149	0.32314	70.149	69.962	70.286	0	0.12874	-0.0031819	NaN	26.796	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225500			29813	34917	24471	24497							0.02366686385801131
LGGLNYLRI	9	Unmodified	_LGGLNYLRI_					0	0	0			REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|28|1|sense	REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|28|1|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8036193847656	2	509.805834	1017.59712	-0.41042	-0.00020923	-3.6368	-0.0018541	-4.0473	-0.0020633	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.64339	1	13682	13682		26.796	1.3459	1	150140	+		29814	28260	24472	24498	33051	33051					0.08902039576821608
LGGLSHRK	8	Unmodified	_LGGLSHRK_					0	0	0			REV__ENST00000541207.1_1_12:12674099-12674270:-|nuORF	REV__ENST00000541207.1_1_12:12674099-12674270:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	434.287353515625	2	434.261594	866.508634	-0.62926	-0.00027326	0.2957	0.00012841	-0.33356	-0.00014485	434.261971427591	84.892	0.63666	82.631	82.407	83.044	-2.261					16	12	2	0	0	0	0.028476	1	4954	4954		66.429	15.094	1	45034	+		29815	27366	24473	24499	33052	33052					0.07004044057032388
LGGMVHHL	8	Unmodified	_LGGMVHHL_					0	0	0			REV__ENST00000483923.5_1_10:100150731-100167745:-|nuORF	REV__ENST00000483923.5_1_10:100150731-100167745:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	431.7484436035156	2	432.231448	862.448342	0.68277	0.00029512	-4.2021	-0.0018163	-3.5193	-0.0015212	432.2289753274905	56.308	0.40206	53.013	52.769	53.171	-3.2944					9	7	2	0	0	0	0.028476	1	3587	3587		24.504	0	1	7170.7	+		29816	18476	24474	24500	33053	33053					0.011616104022891705
LGGPCVHGSRE	11	Unmodified	_LGGPCVHGSRE_					0	0	0			REV__ENST00000397977.7_1_8:19675023-19675167:+|nuORF	REV__ENST00000397977.7_1_8:19675023-19675167:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	556.7723999023438	2	556.26929	1110.52403	1.3401	0.00074546	2.1406	0.0011908	3.4807	0.0019362	556.2703298502786	61.128	1.3911	58.06	57.54	58.931	-3.0685					61	39	2	0	0	0	0.68021	1	2130	2130		36.447	12.924	1	29839	+		29817	25367	24475	24501	33054	33054					-0.026814572080866128
LGGPCVHGSRE	11	Unmodified	_LGGPCVHGSRE_					0	0	0			REV__ENST00000397977.7_1_8:19675023-19675167:+|nuORF	REV__ENST00000397977.7_1_8:19675023-19675167:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	556.26929	1110.52403	0.69892	0.00038879	2.4128	0.0013422	3.1118	0.001731	556.2706707834143	61.395	1.2493	57.965	57.494	58.743	-3.43	-0.047303	0.00026807	NaN	36.447	57	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165450	+		29818	25367	24475	24501							-0.026814572080866128
LGGPLLLRP	9	Unmodified	_LGGPLLLRP_					0	0	0			REV__ENST00000392341.5_1_17:80197025-80197367:+|nuORF	REV__ENST00000392341.5_1_17:80197025-80197367:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	468.3063659667969	2	468.30547	934.596387	-0.11211	-5.25E-05	-0.42977	-0.00020127	-0.54188	-0.00025376	468.30521098510104	102.7	2.1959	101.18	100.63	102.83	-1.5211					138	41	5	0	0	0	0.22913	2	7085	7070;7085		71.378	2.8932	1	1655400	+		29819	25253	24476	24502	33055;33056	33056					0.12647244927791235
LGGPRGPSV	9	Unmodified	_LGGPRGPSV_					0	0	0			REV__ENST00000460658.5_1_22:31492537-31495228:+|nuORF	REV__ENST00000460658.5_1_22:31492537-31495228:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	420.2399597167969	2	420.240327	838.466101	-0.13393	-5.6284E-05	0.44162	0.00018559	0.30769	0.0001293	420.2403796182225	58.579	1.3779	55.799	55.285	56.662	-2.7801					64	26	3	0	0	0	0.3076	1	4237	4237		62.107	7.2128	1	306450	+		29820	26087	24477	24503	33057	33057					0.04040648928810242
LGGPRGPSV	9	Unmodified	_LGGPRGPSV_					0	0	0			REV__ENST00000460658.5_1_22:31492537-31495228:+|nuORF	REV__ENST00000460658.5_1_22:31492537-31495228:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	420.2413330078125	2	420.240327	838.466101	-0.50522	-0.00021231	0.31347	0.00013173	-0.19175	-8.0581E-05	420.2404424569066	59.122	1.9823	55.73	55.249	57.232	-3.392					65	39	2	0	0	0	0.16562	1	3949	3949		82.241	0	1	1813200	+		29821	26087	24477	24503	33058	33058					0.04040648928810242
LGGPVRYL	8	Unmodified	_LGGPVRYL_					0	0	0		ENST00000483404.5_1_1:234529115-234536620:-|nuORF	ENST00000483404.5_1_1:234529115-234536620:-|nuORF	ENST00000483404.5_1_1:234529115-234536620:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	437.7624816894531	2	437.760895	873.507237	3.1055	0.0013595	-0.72101	-0.00031563	2.3845	0.0010438	437.76042264485415	110.63	1.1136	110.63	110.31	111.42	0					53	24	4	0	0	0	0.69415	1	12568	12568		44.531	0.41427	1	1263100			29822	12587	24478	24504	33059	33059					0.06542409968267293
LGGRKRRL	8	Unmodified	_LGGRKRRL_					0	0	0			REV__ENST00000486439.1_1_6:43041562-43042407:+|nuORF	REV__ENST00000486439.1_1_6:43041562-43042407:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	479.2974548339844	2	478.317235	954.619916	-0.11927	-5.7048E-05	2.9031	0.0013886	2.7838	0.0013315	478.31850296845613	116.39	1.2862	115.35	115.09	116.38	-1.0414					42	25	2	0	0	0	0.028476	1	8693	8693		35.201	0	1	109510	+		29823	26584	24479	24505	33060	33060					0.14079103484971256
LGGRSPEP	8	Unmodified	_LGGRSPEP_					0	0	0		ENST00000538503.5_1_12:121878388-121880774:-|nuORF	ENST00000538503.5_1_12:121878388-121880774:-|nuORF	ENST00000538503.5_1_12:121878388-121880774:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.7304992675781	2	406.716685	811.418816	2.6563	0.0010804	0.075092	3.0541E-05	2.7314	0.0011109	406.71659921160864	101.28	0.41959	101.28	101.11	101.53	0					16	9	2	0	0	0	0.028476	1	11275	11275		23.042	0	1	401470			29824	13423	24480	24506	33061	33061					0.005563696578064992
LGGRVGALPA	10	Unmodified	_LGGRVGALPA_					0	0	0			REV__nc|ENSG00000159164|Q7L0J3-2|SV2A	REV__nc|ENSG00000159164|Q7L0J3-2|SV2A	MULTI-MSMS	OvCa9_classI_Rep2	2	455.7773132324219	2	455.777077	909.5396	0.44756	0.00020399	-0.79005	-0.00036009	-0.34249	-0.0001561	455.77664816232084	39.294	1.4879	36.584	36.31	37.798	-2.7097					84	29	4	0	0	0	0.45225	1	1929	1929		60.972	6.2073	1	978610	+		29825	20600	24481	24507	33062	33062					0.08121197371258404
LGGRVGKK	8	Unmodified	_LGGRVGKK_					0	0	0		ENST00000464470.1_1_13:32999202-32999613:-|nuORF	ENST00000464470.1_1_13:32999202-32999613:-|nuORF	ENST00000464470.1_1_13:32999202-32999613:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.21771240234375	2	407.766512	813.518471	0.77451	0.00031582	-0.10839	-4.4197E-05	0.66612	0.00027162	407.7664155070324	53.887	0.43791	53.887	53.692	54.13	0					15	10	2	0	0	0	0.028476	1	4289	4289		35.201	26.378	1	275070			29826	12253	24482	24508	33063	33063					0.10425232062414125
LGGSLLPLLL	10	Unmodified	_LGGSLLPLLL_					0	0	0			REV__ENSG00000100290|ENST00000216115|BIK	REV__ENSG00000100290|ENST00000216115|BIK	MULTI-MSMS	OvCa9_classI_Rep2	2	498.32763671875	2	498.328611	994.642668	0.83012	0.00041367	-0.95562	-0.00047621	-0.12549	-6.2536E-05	498.32798862484134	129.72	0.69048	129.49	129.27	129.96	-0.22696					25	13	3	0	0	0	0.52321	1	12745	12745		51.335	5.3632	1	37697	+		29827	17392	24483	24509	33064	33064					0.14513265039238377
LGGSLLPLLL	10	Unmodified	_LGGSLLPLLL_					0	0	0			REV__ENSG00000100290|ENST00000216115|BIK	REV__ENSG00000100290|ENST00000216115|BIK	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3268737792969	2	498.328611	994.642668	3.3335	0.0016612	-3.4651	-0.0017267	-0.13154	-6.5549E-05	498.32664392510895	131.12	0.74706	129.64	129.45	130.19	-1.4779					24	15	2	0	0	0	0.56767	2	12606	12606;12618		45.952	0	1	25254	+		29828	17392	24483	24509	33065;33066	33065					0.14513265039238377
LGGSRLLP	8	Unmodified	_LGGSRLLP_					0	0	0		ENST00000560079.6_1_15:85345654-85346083:+|nuORF	ENST00000560079.6_1_15:85345654-85346083:+|nuORF	ENST00000560079.6_1_15:85345654-85346083:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	405.9111022949219	2	406.75307	811.491587	0.32616	0.00013267	0.32201	0.00013098	0.64817	0.00026365	406.75305011880783	63.826	1.8871	61.081	60.533	62.42	-2.7444					59	35	3	0	0	0	0.028476	1	4939	4939		8.2313	0	1	145350			29829	13728	24484	24510	33067	33067					0.07830123451230975
LGGSSHYF	8	Unmodified	_LGGSSHYF_					0	0	0			REV__nc|ENSG00000127914|Q99996-5|AKAP9	REV__nc|ENSG00000127914|Q99996-5|AKAP9	MULTI-MSMS	OvCa9_classI_Rep2	2	434.2038879394531	2	434.20341	866.392267	1.2394	0.00053816	-1.5745	-0.00068363	-0.33503	-0.00014547	434.2025952345841	127.91	1.6798	127.68	127.34	129.02	-0.22697					69	33	3	0	0	0	0.74679	1	12510	12510		28.254	2.6802	1	238510	+		29830	18830	24485	24511	33068	33068					-0.046273192335320346
LGGVHFTL	8	Unmodified	_LGGVHFTL_					0	0	0			REV__ENSG00000169962|ENST00000339381|TAS1R3	REV__ENSG00000169962|ENST00000339381|TAS1R3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	422.51422119140625	2	422.239796	842.465038	-1.5263	-0.00064447	-3.178	-0.0013419	-4.7043	-0.0019863	422.23834814340626	50.507	1.1241	47.366	47.132	48.256	-3.1416					35	21	2	0	0	0	0.028476	1	2883	2883		40.573	7.057	1	130810	+		29831	21501	24486	24512	33069	33069					0.03750434559901805
LGGVHFTL	8	Unmodified	_LGGVHFTL_					0	0	0			REV__ENSG00000169962|ENST00000339381|TAS1R3	REV__ENSG00000169962|ENST00000339381|TAS1R3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	422.239796	842.465038	-0.96723	-0.0004084	-3.8366	-0.00162	-4.8038	-0.0020284	422.2381122173022	50.35	0.64437	47.556	47.281	47.926	-2.794	0.094979	-0.00047038	NaN	40.573	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24507	+		29832	21501	24486	24512							0.03750434559901805
LGGVKKKT	8	Unmodified	_LGGVKKKT_					0	0	0		ENSG00000168495|ENST00000306433|POLR3D	ENSG00000168495|ENST00000306433|POLR3D	ENSG00000168495|ENST00000306433|POLR3D	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.56988525390625	2	415.776545	829.538538	0.0021166	8.8004E-07	0.081216	3.3768E-05	0.083332	3.4648E-05	415.7764682371709	39.649	0.37839	39.649	39.505	39.883	0					13	8	2	0	0	0	0.028476	1	2330	2330		17.365	6.4994	1	358440			29833	6913	24487	24513	33070	33070					0.11694983002371373
LGGVPHFP	8	Unmodified	_LGGVPHFP_					0	0	0			REV__ENST00000594369.5_1_19:58987574-58987832:+|nuORF	REV__ENST00000594369.5_1_19:58987574-58987832:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	412.2281494140625	2	412.226688	822.438824	2.2605	0.00093185	0.32906	0.00013565	2.5896	0.0010675	412.22669256697355	130.91	1.0458	130.91	130.53	131.58	0					48	21	3	0	0	0	0.69862	1	15234	15234		43.626	0	1	473200	+		29834	27981	24488	24514	33071	33071					0.02050165388413916
LGGVVVWNR	9	Unmodified	_LGGVVVWNR_					0	0	0			REV__ENSG00000143314|ENST00000361531|MRPL24	REV__ENSG00000143314|ENST00000361531|MRPL24	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.3053283691406	2	500.290351	998.566149	-1.4692	-0.00073501	1.2444	0.00062257	-0.22475	-0.00011244	500.79394245198023	95.325	0.30064	92.856	92.661	92.962	-2.4685					8	5	2	0	0	0	0.027462	1	8356	8356		18.324	0	1	12749	+		29835	19829	24489	24515	33072	33072					0.06680886262597596
LGHAAPAFMG	10	Unmodified	_LGHAAPAFMG_					0	0	0		tr|A0A553SM02|A0A553SM02_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_21640PE=4SV=1	tr|A0A553SM02|A0A553SM02_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_21640PE=4SV=1	tr|A0A553SM02|A0A553SM02_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_21640PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.2645568847656	2	486.242012	970.469472	-0.30658	-0.00014907	3.1706	0.0015417	2.864	0.0013926	486.2434537327082	56.026	0.6551	52.731	52.516	53.171	-3.2944					36	12	4	0	0	0	0.027007	1	3556	3556		26.796	0	1	193460			29836	33777	24490	24516	33073	33073					-0.01694424288848495
LGHAGEPLLG	10	Unmodified	_LGHAGEPLLG_					0	0	0			REV__ENST00000308893.8_1_16:29989574-29990151:+|nuORF	REV__ENST00000308893.8_1_16:29989574-29990151:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	482.26776123046875	2	482.266542	962.51853	0.4736	0.0002284	-0.56273	-0.00027138	-0.089123	-4.2981E-05	482.2662579892328	72.554	2.7982	72.554	70.994	73.792	0					137	69	4	0	0	0	0.33316	1	7051	7051		76.847	10.417	1	30649000	+		29837	24319	24491	24517	33074	33074					0.03577187271764615
LGHLKSLSI	9	Unmodified	_LGHLKSLSI_					0	0	0			REV__tr|A0A553SFK7|A0A553SFK7_NIACIAdapterproteinMecAOS=NialliacirculansOX=1397GN=mecAPE=3SV=1	REV__tr|A0A553SFK7|A0A553SFK7_NIACIAdapterproteinMecAOS=NialliacirculansOX=1397GN=mecAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.2708740234375	2	484.300384	966.586216	-2.2497	-0.0010895	0.16962	8.2148E-05	-2.0801	-0.0010074	484.3003024993089	49.468	0.35975	46.327	46.095	46.455	-3.1416					9	6	2	0	0	0	0.027232	1	2804	2804		66.429	24.033	1	18020	+		29838	29588	24492	24518	33075	33075					0.10158637202562204
LGHVRYVL	8	Unmodified	_LGHVRYVL_					0	0	0		ENSG00000155189|ENST00000285518|AGPAT5	ENSG00000155189|ENST00000285518|AGPAT5	ENSG00000155189|ENST00000285518|AGPAT5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.9403991699219	2	478.787444	955.560336	-0.23989	-0.00011486	-3.2087	-0.0015363	-3.4486	-0.0016511	478.7858015762263	46.702	0.72203	43.629	43.189	43.911	-3.0724					17	13	2	0	0	0	0.028476	1	2417	2417		20.482	0	1	50144			29839	5772	24493	24519	33076	33076					0.0807778775093766
LGHYLLTAIV	10	Unmodified	_LGHYLLTAIV_					0	0	0		nc|ENSG00000110497|Q9C0C7-6|AMBRA1;nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1	nc|ENSG00000110497|Q9C0C7-6|AMBRA1	nc|ENSG00000110497|Q9C0C7-6|AMBRA1	MULTI-MSMS	OvCa9_classI_Rep2	2	550.3255615234375	2	550.329142	1098.64373	-0.25059	-0.0001379	-4.002	-0.0022024	-4.2526	-0.0023403	550.3269039710714	83.949	1.6656	82.403	81.784	83.449	-1.5462					94	32	4	0	0	0	0.53404	2	7217	7201;7217		50.025	9.162	1	662850			29840	2780	24494	24520	33077;33078	33078					0.09835479408116043
LGHYLLTAIV	10	Unmodified	_LGHYLLTAIV_					0	0	0		nc|ENSG00000110497|Q9C0C7-6|AMBRA1;nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1	nc|ENSG00000110497|Q9C0C7-6|AMBRA1	nc|ENSG00000110497|Q9C0C7-6|AMBRA1	MULTI-MSMS	OvCa9_classI_Rep2	2	550.3263549804688	2	550.329142	1098.64373	-0.8792	-0.00048385	-4.099	-0.0022558	-4.9782	-0.0027397	550.3268942315257	85.56	1.6104	84.069	83.505	85.115	-1.4907					109	31	5	0	0	0	0.47435	3	7413	7379;7413;7439		57.811	18.558	1	1857300			29841	2780	24494	24520	33079;33080;33081	33080					0.09835479408116043
LGHYLLTAIV	10	Unmodified	_LGHYLLTAIV_					0	0	0		nc|ENSG00000110497|Q9C0C7-6|AMBRA1;nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1	nc|ENSG00000110497|Q9C0C7-6|AMBRA1	nc|ENSG00000110497|Q9C0C7-6|AMBRA1	MULTI-MSMS	OvCa9_classI_Rep3	3	550.3279418945312	2	550.329142	1098.64373	-1.5395	-0.00084725	-2.9107	-0.0016019	-4.4502	-0.0024491	550.3275660732565	84.687	1.7638	82.426	81.881	83.645	-2.261					107	35	5	0	0	0	0.47435	2	4958	4945;4958		57.811	3.0889	1	1227100			29842	2780	24494	24520	33082;33083	33083					0.09835479408116043
LGHYLLTAIV	10	Unmodified	_LGHYLLTAIV_					0	0	0		nc|ENSG00000110497|Q9C0C7-6|AMBRA1;nc|ENSG00000110497|Q9C0C7-4|AMBRA1;nc|ENSG00000110497|Q9C0C7-2|AMBRA1;nc|ENSG00000110497|Q9C0C7-3|AMBRA1;ENSG00000110497|ENST00000683756|AMBRA1;nc|ENSG00000110497|Q9C0C7-5|AMBRA1	nc|ENSG00000110497|Q9C0C7-6|AMBRA1	nc|ENSG00000110497|Q9C0C7-6|AMBRA1	MULTI-MSMS	OvCa9_classI_Rep3	3	550.328125	2	550.329142	1098.64373	-1.5659	-0.00086175	-2.871	-0.00158	-4.4368	-0.0024417	550.3275336090328	86.284	1.4089	84.064	83.686	85.095	-2.2204					106	27	5	0	0	0	0.47435	1	5116	5116		57.811	3.035	1	3899600			29843	2780	24494	24520	33084	33084					0.09835479408116043
LGIERALK	8	Unmodified	_LGIERALK_					0	0	0			REV__MTHFD1-CASK|2|fusion	REV__MTHFD1-CASK|2|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	450.287353515625	2	450.287277	898.560001	3.2846	0.001479	-0.72376	-0.0003259	2.5608	0.0011531	450.2868564270121	89.535	0.57753	89.535	89.313	89.891	0					22	13	2	0	0	0	0.60331	1	9575	9575		63.306	2.3343	1	939420	+		29844	28684	24495	24521	33085	33085					0.10666368031093043
LGIGITFID	9	Unmodified	_LGIGITFID_					0	0	0		nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;ENST00000465814.5_1_11:72407932-72423670:-|nuORF;nc|ENSG00000186635|Q96P48-7|ARAP1;ENST00000542264.1_1_11:72420913-72421012:-|nuORF	nc|ENSG00000186635|Q96P48-3|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.3128356933594	2	474.773668	947.532783	0.19875	9.4361E-05	0.18261	8.67E-05	0.38136	0.00018106	474.77346926736254	104.59	0.97461	102.47	102.27	103.25	-2.1192					26	18	2	0	0	0	0.027462	1	9510	9510		17.365	0	1	54902			29845	8350	24496	24522	33086	33086					0.056918397000458754
LGIHNRIVL	9	Unmodified	_LGIHNRIVL_					0	0	0			REV__tr|A0A7D6ZK60|A0A7D6ZK60_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11290PE=4SV=1	REV__tr|A0A7D6ZK60|A0A7D6ZK60_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11290PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.7540893554688	2	517.827101	1033.63965	-0.94871	-0.00049127	0.40088	0.00020759	-0.54783	-0.00028368	517.8273009409605	99.454	1.0203	97.129	96.847	97.867	-2.3253					42	19	3	0	0	0	0.027449	1	8932	8932		31.955	0	1	142440	+		29846	32100	24497	24523	33087	33087					0.12417434705071173
LGILSVILPM	10	Unmodified	_LGILSVILPM_					0	0	0			REV__tr|A0A553SQA8|A0A553SQA8_NIACITransglycosylaseSLTdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24400PE=4SV=1	REV__tr|A0A553SQA8|A0A553SQA8_NIACITransglycosylaseSLTdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24400PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	528.3280639648438	2	528.330296	1054.64604	0.33475	0.00017686	-3.5948	-0.0018992	-3.26	-0.0017224	528.3282724916941	128.79	3.3005	127.69	127.27	130.57	-1.0933					188	66	4	0	0	0	0.69986	1	10292	10292		30.504	6.3009	1	235110	+		29847	30618	24498	24524	33088	33088					0.12090191821562257
LGIPGSGLVL	10	Unmodified	_LGIPGSGLVL_					0	0	0			REV__tr|A0A7D6ZXU1|A0A7D6ZXU1_9CLOT2,3-butanedioldehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23290PE=3SV=1	REV__tr|A0A7D6ZXU1|A0A7D6ZXU1_9CLOT2,3-butanedioldehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23290PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.74090576171875	2	463.289485	924.564418	-0.95855	-0.00044408	3.4741	0.0016095	2.5155	0.0011654	463.2896632126358	73.918	2.0633	70.687	70.386	72.449	-3.2308					56	42	2	0	0	0	0.026519	1	5740	5740		65.803	23.407	1	257690	+		29848	32346	24499	24525	33089	33089					0.09911832453997249
LGIRHGAKIE	10	Unmodified	_LGIRHGAKIE_					0	0	0			REV__tr|A0A553SNW8|A0A553SNW8_NIACIZincmetalloproteaseOS=NialliacirculansOX=1397GN=rsePPE=3SV=1	REV__tr|A0A553SNW8|A0A553SNW8_NIACIZincmetalloproteaseOS=NialliacirculansOX=1397GN=rsePPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.3280029296875	2	547.327465	1092.64038	-1.4276	-0.00078134	0.75756	0.00041463	-0.67	-0.00036671	547.3278680090106	95.35	1.9184	92.881	92.31	94.229	-2.4685					103	37	4	0	0	0	0.48198	1	8385	8385		56.721	4.4219	1	1430500	+		29849	30467	24500	24526	33090	33090					0.09776229354133648
LGIVPIPVSV	10	Unmodified	_LGIVPIPVSV_					0	0	0			REV__ENSG00000147246|ENST00000276198|HTR2C	REV__ENSG00000147246|ENST00000276198|HTR2C	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.2475280761719	2	497.320786	992.627018	1.4612	0.00072669	-0.059684	-2.9682E-05	1.4015	0.00069701	497.32035416995825	109	0.30437	109	108.85	109.15	0					8	6	2	0	0	0	0.026939	1	12324	12324		24.203	13.337	1	70042	+		29850	20055	24501	24527	33091	33091					0.13040978522201385
LGIVREVLP	9	Unmodified	_LGIVREVLP_					0	0	0		nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2	nc|ENSG00000130589|Q9BYK8-2|HELZ2	nc|ENSG00000130589|Q9BYK8-2|HELZ2	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3150939941406	2	498.316035	994.617516	0.7807	0.00038904	-1.1222	-0.00055921	-0.3415	-0.00017018	498.31525557924255	111.08	1.6999	109.97	109.44	111.14	-1.1038					98	33	7	0	0	0	0.22961	1	8056	8056		71.296	0	1	1109600			29851	3995	24502	24528	33092	33092					0.11999210236660929
LGKEKVSL	8	Unmodified	_LGKEKVSL_					0	0	0			REV__HERVH-int_dup395|chr1:229174781-229177850:+|1.6476935486843904|0.2234293350488721|2.88|410.0|132|2|anti-sense	REV__HERVH-int_dup395|chr1:229174781-229177850:+|1.6476935486843904|0.2234293350488721|2.88|410.0|132|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	438.238037109375	2	437.273835	872.533118	1.4101	0.00061659	-1.0432	-0.00045615	0.36692	0.00016045	437.2732603325713	72.15	0.49408	72.15	71.956	72.45	0					24	11	3	0	0	0	0.028476	1	7022	7022		47.916	15.103	1	583320	+		29852	28233	24503	24529	33093	33093					0.0917525941989652
LGKEKVSL	8	Unmodified	_LGKEKVSL_					0	0	0			REV__HERVH-int_dup395|chr1:229174781-229177850:+|1.6476935486843904|0.2234293350488721|2.88|410.0|132|2|anti-sense	REV__HERVH-int_dup395|chr1:229174781-229177850:+|1.6476935486843904|0.2234293350488721|2.88|410.0|132|2|anti-sense	MULTI-MATCH	OvCa9_classI_Rep3	3		2	437.273835	872.533118	-0.092928	-4.0635E-05	0.22989	0.00010052	0.13696	5.9888E-05	437.2737778868634	74.919	1.2874	72.508	72.192	73.479	-2.4106	0.17926	0.00031621	NaN	47.916	55	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121670	+		29853	28233	24503	24529							0.0917525941989652
LGKGEALGIV	10	Unmodified	_LGKGEALGIV_					0	0	0		tr|A0A7D6ZY33|A0A7D6ZY33_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14895PE=3SV=1	tr|A0A7D6ZY33|A0A7D6ZY33_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14895PE=3SV=1	tr|A0A7D6ZY33|A0A7D6ZY33_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14895PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	478.79339599609375	2	478.792392	955.570232	-0.51114	-0.00024473	-0.47899	-0.00022934	-0.99013	-0.00047407	478.79207532118255	82.802	1.8434	80.505	80.235	82.079	-2.2963					87	38	5	0	0	0	0.48398	1	4698	4698		56.434	1.6575	1	1894200			29854	35908	24504	24530	33094	33094					0.09066930965650499
LGKGMTTLL	9	Oxidation (M)	_LGKGM(Oxidation (M))TTLL_		LGKGM(1)TTLL		LGKGM(77)TTLL	0	0	1		ENST00000519007.5_1_8:91013720-91041621:+|nuORF;nc|ENSG00000104325|Q16698-2|DECR1;ENSG00000104325|ENST00000220764|DECR1	ENST00000519007.5_1_8:91013720-91041621:+|nuORF	ENST00000519007.5_1_8:91013720-91041621:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	475.2740783691406	2	475.272978	948.531403	0.4621	0.00021962	0.6845	0.00032533	1.1466	0.00054495	475.27310259806933	105.63	2.1672	105.63	104.15	106.32	0					99	49	3	0	0	0	0.19758	1	11846	11846		76.774	10.345	1	1047800			29855	2367	24505	24531	33095	33095		77			0.055078823396456755
LGKKGEKG	8	Unmodified	_LGKKGEKG_					0	0	0		tr|A0A7D6VYY6|A0A7D6VYY6_9CLOTRibonucleaseROS=ClostridiumintestinaleOX=36845GN=rnrPE=3SV=1	tr|A0A7D6VYY6|A0A7D6VYY6_9CLOTRibonucleaseROS=ClostridiumintestinaleOX=36845GN=rnrPE=3SV=1	tr|A0A7D6VYY6|A0A7D6VYY6_9CLOTRibonucleaseROS=ClostridiumintestinaleOX=36845GN=rnrPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	408.7511901855469	2	408.750527	815.486502	1.5223	0.00062226	-1.4842	-0.00060666	0.038166	1.56E-05	408.74987235754776	30.982	0.39322	28.273	28.1	28.494	-2.7097					10	7	2	0	0	0	0.75241	1	895	895		25.45	0	1	13474			29856	35343	24506	24532	33096	33096					0.07137819588615457
LGKKLNTSF	9	Unmodified	_LGKKLNTSF_					0	0	0			REV__ENSG00000214042|ENST00000239347|IFNA7	REV__ENSG00000214042|ENST00000239347|IFNA7	MULTI-MSMS	OvCa99_classI_Rep5	1	504.3016052246094	2	504.297842	1006.58113	2.9789	0.0015023	-0.76551	-0.00038605	2.2134	0.0011162	504.2972224332853	89.675	0.54162	89.675	89.435	89.977	0					22	12	2	0	0	0	0.38969	1	9590	9590		52.937	3.4952	1	842800	+		29857	23282	24507	24533	33097	33097					0.07810333339944009
LGKLPGLKTL	10	Unmodified	_LGKLPGLKTL_					0	0	0		nc|ENSG00000214954|Q6ZNQ3-2|LRRC69;ENSG00000214954|ENST00000448384|LRRC69	nc|ENSG00000214954|Q6ZNQ3-2|LRRC69	nc|ENSG00000214954|Q6ZNQ3-2|LRRC69	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.3472900390625	2	520.347335	1038.68012	2.9948	0.0015583	-3.7019	-0.0019263	-0.70713	-0.00036795	520.3453507640438	130.94	2.3528	129.46	129.06	131.41	-1.4779					149	47	5	0	0	0	0.67931	1	12691	12691		32.812	2.3088	1	2675200			29858	9193	24508	24534	33098	33098					0.1623235630486306
LGKNAVLEI	9	Unmodified	_LGKNAVLEI_					0	0	0		tr|A0A7D6VQN0|A0A7D6VQN0_9CLOTPTSsystemmannose/fructose/sorbosefamilytransportersubunitIIDOS=ClostridiumintestinaleOX=36845GN=HZF06_04035PE=4SV=1	tr|A0A7D6VQN0|A0A7D6VQN0_9CLOTPTSsystemmannose/fructose/sorbosefamilytransportersubunitIIDOS=ClostridiumintestinaleOX=36845GN=HZF06_04035PE=4SV=1	tr|A0A7D6VQN0|A0A7D6VQN0_9CLOTPTSsystemmannose/fructose/sorbosefamilytransportersubunitIIDOS=ClostridiumintestinaleOX=36845GN=HZF06_04035PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	478.79229736328125	2	478.792392	955.570232	0.14193	6.7955E-05	-1.2477	-0.00059739	-1.1058	-0.00052944	478.7916935444692	82.342	2.8721	80.713	80.198	83.07	-1.6293					121	56	4	0	0	0	0.48324	1	7007	7007		44.117	3.3386	1	897530			29859	34861	24509	24535	33099	33099					0.0906693096563913
LGKRPTKDS	9	Unmodified	_LGKRPTKDS_					0	0	0		nc|ENSG00000105695|P20916-3|MAG;ENSG00000105695|ENST00000392213|MAG;ENST00000361922.8_1_19:35803216-35804354:+|nuORF	nc|ENSG00000105695|P20916-3|MAG	nc|ENSG00000105695|P20916-3|MAG	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.28973388671875	2	501.290548	1000.56654	1.9923	0.0009987	-2.262	-0.0011339	-0.26972	-0.00013521	501.28921225940996	136.36	2.694	134.82	133.46	136.15	-1.5437					126	54	3	0	0	0	0.62352	1	13303	13303		29.15	2.3535	1	86011			29860	2491	24510	24536	33100	33100					0.06628261191804086
LGKVHILLN	9	Unmodified	_LGKVHILLN_					0	0	0		nc|ENSG00000290988|Q8N8C0-2|ZNF781;nc|ENSG00000290988|Q8N8C0|ZNF781	nc|ENSG00000290988|Q8N8C0-2|ZNF781	nc|ENSG00000290988|Q8N8C0-2|ZNF781	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.80120849609375	2	503.824027	1005.6335	0.75685	0.00038132	-0.62933	-0.00031707	0.12752	6.4248E-05	503.8232935560317	97.026	0.49488	94.601	94.42	94.915	-2.4256					12	8	2	0	0	0	0.027462	1	8615	8615		29.15	0	1	17924			29861	15398	24511	24537	33101	33101					0.13090916473561265
LGKVHLAM	8	Unmodified	_LGKVHLAM_					0	0	0		ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	ENSG00000103319|ENST00000263026|EEF2K	MULTI-MSMS	OvCa9_classI_Rep4_	4	434.7607116699219	2	434.757298	867.500044	1.7873	0.00077704	2.594	0.0011278	4.3813	0.0019048	434.75831214384687	139.52	2.3534	138.02	137.27	139.63	-1.4952					101	45	4	0	0	0	0.74679	1	13589	13589		28.254	5.2176	1	874370			29862	2307	24512	24538	33102	33102					0.0609935409619311
LGKWRRRRRRP	11	Unmodified	_LGKWRRRRRRP_					0	0	0		ENST00000453677.1_1_7:104654330-104654752:-|nuORF	ENST00000453677.1_1_7:104654330-104654752:-|nuORF	ENST00000453677.1_1_7:104654330-104654752:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.9852294921875	3	512.990543	1535.9498	-6.5915	-0.0033814	-3.6254	-0.0018598	-10.217	-0.0052411	512.9885265039754	160.8	2.6264	159.19	157.99	160.62	-1.6101					147	60	4	0	0	0	0.72582	1	15853	15853		3.4087	0.19739	1	58638			29863	12075	24513	24539	33103	33103					0.20326147484411194
LGKWRRRRRRP	11	Unmodified	_LGKWRRRRRRP_					0	0	0		ENST00000453677.1_1_7:104654330-104654752:-|nuORF	ENST00000453677.1_1_7:104654330-104654752:-|nuORF	ENST00000453677.1_1_7:104654330-104654752:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.9868774414062	3	512.990543	1535.9498	-6.6121	-0.0033919	-3.5642	-0.0018284	-10.176	-0.0052203	512.9886707533774	164.07	1.5176	162.43	161.01	162.53	-1.6336					104	42	3	0	0	0	0.72545	2	16190	16176;16190		9.6461	6.0271	1	186650			29864	12075	24513	24539	33104;33105	33105					0.20326147484411194
LGLAGNIAVL	10	Unmodified	_LGLAGNIAVL_					0	0	0		tr|A0A553SJB3|A0A553SJB3_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_16475PE=4SV=1	tr|A0A553SJB3|A0A553SJB3_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_16475PE=4SV=1	tr|A0A553SJB3|A0A553SJB3_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_16475PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	470.7965393066406	2	470.794935	939.575317	0.721	0.00033944	-1.1739	-0.00055269	-0.45295	-0.00021325	470.79432724081363	79.671	2.137	77.331	76.802	78.939	-2.3399					94	41	5	0	0	0	0.35697	1	4327	4327		73.975	10.668	1	1458600			29865	33487	24514	24540	33106	33106					0.10311234828293436
LGLAGWSIVLA	11	Unmodified	_LGLAGWSIVLA_					0	0	0			REV__nc|ENSG00000136295|Q9C0H2-3|TTYH3	REV__nc|ENSG00000136295|Q9C0H2-3|TTYH3	MULTI-MSMS	OvCa9_classI_Rep2	2	550.3270263671875	2	550.329142	1098.64373	-0.8792	-0.00048385	-4.099	-0.0022558	-4.9782	-0.0027397	550.3268942315257	85.56	1.6104	84.069	83.505	85.115	-1.4907					109	31	5	0	0	0	0.60609	1	7447	7447		44.117	7.7992	1	1857300	+		29866	19377	24515	24541	33107	33107					0.09835479408138781
LGLFSLVLA	9	Unmodified	_LGLFSLVLA_					0	0	0		tr|A0A7D6ZQY6|A0A7D6ZQY6_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02340PE=3SV=1	tr|A0A7D6ZQY6|A0A7D6ZQY6_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02340PE=3SV=1	tr|A0A7D6ZQY6|A0A7D6ZQY6_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02340PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.79443359375	2	466.794404	931.574254	0.4922	0.00022975	-0.75227	-0.00035116	-0.26008	-0.0001214	466.7939124327931	115	1.6641	113.6	113.15	114.81	-1.3977					75	32	4	0	0	0	0.17908	1	10697	10697		79.939	7.3193	1	247140			29867	35710	24516	24542	33108	33108					0.10573020459378313
LGLGLPVSL	9	Unmodified	_LGLGLPVSL_					0	0	0		ENSG00000257008|ENST00000582579|GPR142;nc|ENSG00000257008|Q7Z601|GPR142	ENSG00000257008|ENST00000582579|GPR142	ENSG00000257008|ENST00000582579|GPR142	MULTI-MSMS	OvCa9_classI_Rep4_	4	434.78125	2	434.778754	867.542954	0.59338	0.00025799	2.5222	0.0010966	3.1156	0.0013546	434.77972788818795	57.249	1.9714	53.904	53.425	55.397	-3.3449					103	38	4	0	0	0	0.52083	1	3743	3743		40.573	0	1	352580			29868	9468	24517	24543	33109	33109					0.10388447425293634
LGLGVAVIGGV	11	Unmodified	_LGLGVAVIGGV_					0	0	0			REV__ENSG00000139626|ENST00000267082|ITGB7	REV__ENSG00000139626|ENST00000267082|ITGB7	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.8044128417969	2	477.80276	953.590967	-2.11	-0.0010082	2.2995	0.0010987	0.18954	9.0563E-05	477.8036012396216	149.24	0.90439	147.81	147.57	148.48	-1.4344					38	18	3	0	0	0	0.69331	1	14710	14710		31.955	4.0726	1	51060	+		29869	19623	24518	24544	33110	33110					0.11231521345337114
LGLKSAQSL	9	Unmodified	_LGLKSAQSL_					0	0	0			REV__ENSG00000112218|ENST00000229955|GPR63	REV__ENSG00000112218|ENST00000229955|GPR63	MULTI-MSMS	OvCa99_classI_Rep5	1	458.7780456542969	2	458.776742	915.538931	0.088338	4.0527E-05	-0.12803	-5.8736E-05	-0.03969	-1.8209E-05	458.7765651710222	72.896	0.83655	72.896	72.684	73.52	0					46	20	4	0	0	0	0.1804	1	7148	7148		79.713	0	1	5690100	+		29870	18085	24519	24545	33111	33111					0.07778357931567825
LGLKSSRLV	9	Unmodified	_LGLKSSRLV_					0	0	0			REV__ENST00000305798.7_1_4:99579386-99579464:-|nuORF	REV__ENST00000305798.7_1_4:99579386-99579464:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.28900146484375	2	486.813659	971.612765	0.82614	0.00040217	3.7252	0.0018135	4.5513	0.0022157	486.8151396927702	84.44	0.55421	81.777	81.549	82.103	-2.6629					17	11	2	0	0	0	0.027462	1	7102	7102		29.15	3.6994	1	52288	+		29871	24287	24520	24546	33112	33112					0.12582326093900065
LGLKSSRLV	9	Unmodified	_LGLKSSRLV_					0	0	0			REV__ENST00000305798.7_1_4:99579386-99579464:-|nuORF	REV__ENST00000305798.7_1_4:99579386-99579464:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	486.813659	971.612765	-1.5253	-0.00074252	5.9278	0.0028857	4.4025	0.0021432	486.8162687527552	84.028	0.97937	81.767	81.478	82.457	-2.261	-0.0047564	0.00086717	NaN	29.15	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66332	+		29872	24287	24520	24546							0.12582326093900065
LGLLDWRTGT	10	Unmodified	_LGLLDWRTGT_					0	0	0			REV__ENST00000416152.5_2_3:195590478-195590787:-|nuORF	REV__ENST00000416152.5_2_3:195590478-195590787:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	566.3111572265625	2	566.31148	1130.60841	0.25991	0.00014719	-0.60759	-0.00034409	-0.34768	-0.00019689	566.3110208704823	105.99	0.99156	104.64	104.4	105.4	-1.3482					58	18	4	0	0	0	0.59703	1	7471	7471		42.396	3.59	1	348950	+		29873	25541	24521	24547	33113	33113					0.04832816880320934
LGLLEGKEL	9	Unmodified	_LGLLEGKEL_					0	0	0			REV__ENST00000367311.4_1_1:201434710-201435094:-|nuORF	REV__ENST00000367311.4_1_1:201434710-201435094:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	486.293701171875	2	486.292225	970.569897	1.8181	0.00088411	0.26035	0.00012661	2.0784	0.0010107	486.2922784489875	134.34	3.4861	134.34	133.72	137.21	0					179	74	5	0	0	0	0.46377	1	15927	15927		45.952	0	1	13018000	+		29874	24894	24522	24548	33114	33114					0.08343511245811897
LGLLFGYSF	9	Unmodified	_LGLLFGYSF_					0	0	0		ENSG00000253598|ENST00000518568|SLC10A5	ENSG00000253598|ENST00000518568|SLC10A5	ENSG00000253598|ENST00000518568|SLC10A5	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.77447509765625	2	508.776211	1015.53787	-1.6042	-0.0008162	-3.4831	-0.0017721	-5.0873	-0.0025883	508.7740995217791	118.94	1.4589	117.6	116.79	118.25	-1.3444					48	27	3	0	0	0	0.50066	1	11159	11159		42.474	3.6683	1	95521			29875	9434	24523	24549	33115	33115					0.030721435626674065
LGLLFGYSF	9	Unmodified	_LGLLFGYSF_					0	0	0		ENSG00000253598|ENST00000518568|SLC10A5	ENSG00000253598|ENST00000518568|SLC10A5	ENSG00000253598|ENST00000518568|SLC10A5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	508.776211	1015.53787	-0.27859	-0.00014174	-4.4092	-0.0022433	-4.6878	-0.002385	508.77371242390984	118.55	0.99315	117.52	117.29	118.28	-1.0271	-0.038609	-0.00015169	NaN	42.474	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90148			29876	9434	24523	24549							0.030721435626674065
LGLLGAVLTRS	11	Unmodified	_LGLLGAVLTRS_					0	0	0			REV__ENST00000216288.11_1_14:103852278-103852365:+|nuORF	REV__ENST00000216288.11_1_14:103852278-103852365:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	550.3453369140625	2	550.345323	1098.67609	-0.59567	-0.00032783	-1.7866	-0.00098326	-2.3823	-0.0013111	550.3444206988577	24.195	0.20009	24.195	24.086	24.287	0					6	3	2	0	0	0	0.72479	1	421	421		18.262	4.125	1	24531	+		29877	23720	24524	24550	33116	33116					0.13070266811109832
LGLLIYKW	8	Unmodified	_LGLLIYKW_					0	0	0			REV__nc|ENSG00000110660|Q8IXU6-3|SLC35F2	REV__nc|ENSG00000110660|Q8IXU6-3|SLC35F2	MULTI-SECPEP	OvCa9_classI_Rep3	3	503.277587890625	2	503.310221	1004.60589	-1.3657	-0.00068735	-3.3892	-0.0017058	-4.7548	-0.0023931	503.30825753294465	82.556	1.2412	80.259	79.887	81.129	-2.2963					37	24	2	0	0	0	0.028476	1	4758	4758		15.636	0	1	66856	+		29878	17993	24525	24551	33117	33117					0.10377013213314967
LGLLIYKW	8	Unmodified	_LGLLIYKW_					0	0	0			REV__nc|ENSG00000110660|Q8IXU6-3|SLC35F2	REV__nc|ENSG00000110660|Q8IXU6-3|SLC35F2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	503.310221	1004.60589	-0.10883	-5.4774E-05	-4.409	-0.0022191	-4.5178	-0.0022739	503.307776644741	81.732	1.1426	80.083	79.818	80.961	-1.6485	-0.080585	-0.00068485	NaN	9.4706	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42487	+		29879	17993	24525	24551							0.10377013213314967
LGLLIYKW	8	Unmodified	_LGLLIYKW_					0	0	0			REV__nc|ENSG00000110660|Q8IXU6-3|SLC35F2	REV__nc|ENSG00000110660|Q8IXU6-3|SLC35F2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	503.310221	1004.60589	-0.82142	-0.00041343	-3.4823	-0.0017527	-4.3037	-0.0021661	503.30833248772063	82.832	1.121	80.149	79.881	81.002	-2.6829	-0.015081	0.00024798	NaN	9.4706	28	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48039	+		29880	17993	24525	24551							0.10377013213314967
LGLLLHQGQRS	11	Unmodified	_LGLLLHQGQRS_					0	0	0			REV__ENST00000306801.7_1_17:78899237-78923276:+|nuORF	REV__ENST00000306801.7_1_17:78899237-78923276:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	611.3554077148438	2	611.356754	1220.69895	-3.7398	-0.0022864	2.6738	0.0016346	-1.0661	-0.00065175	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.72064	1	15248	15248		22.58	0.89391	1	331570	+		29881	24299	24526	24552	33118	33118					0.09743285928607293
LGLLLHQGQRS	11	Unmodified	_LGLLLHQGQRS_					0	0	0			REV__ENST00000306801.7_1_17:78899237-78923276:+|nuORF	REV__ENST00000306801.7_1_17:78899237-78923276:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	611.35595703125	2	611.356754	1220.69895	-3.1571	-0.0019301	2.0725	0.001267	-1.0847	-0.00066312	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.72064	1	12810	12810		22.58	0.61977	1	666990	+		29882	24299	24526	24552	33119	33119					0.09743285928607293
LGLLLHQGQRS	11	Unmodified	_LGLLLHQGQRS_					0	0	0			REV__ENST00000306801.7_1_17:78899237-78923276:+|nuORF	REV__ENST00000306801.7_1_17:78899237-78923276:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3563842773438	2	611.356754	1220.69895	-2.725	-0.001666	1.4566	0.0008905	-1.2684	-0.00077546	611.3575283211214	150.83	4.6872	149.39	148.02	152.71	-1.4344					404	109	6	0	0	0	0.70142	2	14864	14841;14864		29.17	3.0409	1	435030	+		29883	24299	24526	24552	33120;33121	33121					0.09743285928607293
LGLLLLWPWAT	11	Unmodified	_LGLLLLWPWAT_					0	0	0		ALG12|p.L197Wfs*10|1|0.25|ENSG00000182858|chr22:49909970-49909970|C/-|frameshift_variant	ALG12|p.L197Wfs*10|1|0.25|ENSG00000182858|chr22:49909970-49909970|C/-|frameshift_variant	ALG12|p.L197Wfs*10|1|0.25|ENSG00000182858|chr22:49909970-49909970|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8811645507812	2	641.881542	1281.74853	-2.5182	-0.0016164	3.6581	0.0023481	1.14	0.00073171	641.8839546837315	150.47	2.9704	149.03	147.78	150.75	-1.4344					235	64	4	0	0	0	0.7254	1	14745	14745		10.265	0	1	344900			29884	60	24527	24553	33122	33122					0.11892600884698368
LGLLLPQP	8	Unmodified	_LGLLLPQP_					0	0	0		ENST00000328405.6_1_3:19189957-19190221:+|nuORF	ENST00000328405.6_1_3:19189957-19190221:+|nuORF	ENST00000328405.6_1_3:19189957-19190221:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	425.7753601074219	2	425.773471	849.53239	-0.95445	-0.00040638	4.1695	0.0017752	3.215	0.0013689	425.7751660668595	68.762	2.1455	66.142	65.721	67.866	-2.6203					132	42	5	0	0	0	0.74361	1	5439	5439		29.842	0	1	3515300			29885	10423	24528	24554	33123	33123					0.10160464770854105
LGLLRPPLLP	10	Unmodified	_LGLLRPPLLP_					0	0	0			REV__ENST00000570507.5_1_17:79780712-79780796:-|nuORF	REV__ENST00000570507.5_1_17:79780712-79780796:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	544.8630981445312	2	544.863152	1087.71175	-1.2614	-0.00068732	1.0938	0.00059598	-0.16763	-9.1336E-05	544.8636084956992	139.58	0.98232	139.36	139.11	140.09	-0.22696					40	19	3	0	0	0	0.81289	1	13948	13948		17.365	0.89182	1	70566	+		29886	27740	24529	24555	33124	33124					0.17140349058786342
LGLLSLGFE	9	Unmodified	_LGLLSLGFE_					0	0	0		ENSG00000138658|ENST00000505019|ZGRF1;nc|ENSG00000138658|Q86YA3-7|ZGRF1	ENSG00000138658|ENST00000505019|ZGRF1	ENSG00000138658|ENST00000505019|ZGRF1	MULTI-MSMS	OvCa9_classI_Rep2	2	474.7713928222656	2	474.773668	947.532783	-2.2434	-0.0010651	-0.51665	-0.00024529	-2.7601	-0.0013104	474.77329814512956	37.51	1.38	34.8	34.287	35.667	-2.7097					69	27	4	0	0	0	0.59983	1	1716	1716		31.955	0	1	277560			29887	4707	24530	24556	33125	33125					0.05691839700057244
LGLLTAPKE	9	Unmodified	_LGLLTAPKE_					0	0	0		ENST00000591893.1_1_17:73781331-73781418:-|nuORF	ENST00000591893.1_1_17:73781331-73781418:-|nuORF	ENST00000591893.1_1_17:73781331-73781418:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.2861328125	2	471.286943	940.559333	1.6624	0.00078349	-4.482	-0.0021123	-2.8195	-0.0013288	471.2846913754622	36.696	1.0457	33.804	33.546	34.591	-2.8925					44	20	3	0	0	0	0.59983	1	1292	1292		31.955	1.4512	1	249520			29888	14127	24531	24557	33126	33126					0.0866752859137705
LGLLTWAVV	9	Unmodified	_LGLLTWAVV_					0	0	0			REV__ENST00000462684.5_1_10:75038071-75051485:-|nuORF	REV__ENST00000462684.5_1_10:75038071-75051485:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	486.2984313964844	2	486.299853	970.585153	1.9266	0.00093691	-3.7019	-0.0018002	-1.7753	-0.00086334	486.29789298724177	87.119	0.90678	87.119	86.931	87.838	0					42	21	4	0	0	0	0.06571	1	9226	9226		109.7	13.513	1	3898100	+		29889	15784	24532	24558	33127	33127					0.09868422833653767
LGLMFKSLI	9	Unmodified	_LGLMFKSLI_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|175|1|anti-sense;chr2:182748376-182751658|104|12.19|0.28|5.42|+|1|TE_info:L1PA3,L1PA3_dup1364,L1,LINE,donor,-,182745742,182748376|None,DNAJC10|21	L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|175|1|anti-sense	L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|175|1|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	511.31268310546875	2	511.309364	1020.60417	-0.23232	-0.00011879	3.4007	0.0017388	3.1684	0.00162	511.310990034807	61.176	0.64179	61.176	60.943	61.585	0					42	14	5	0	0	0	0.21231	1	5376	5376		74.255	13.283	1	2077200			29890	434	24533	24559	33128	33128					0.09469636133076165
LGLPGPALL	9	Unmodified	_LGLPGPALL_					0	0	0		ENST00000431281.5_1_17:43214735-43220935:+|nuORF;ENSG00000181513|ENST00000321854|ACBD4	ENST00000431281.5_1_17:43214735-43220935:+|nuORF	ENST00000431281.5_1_17:43214735-43220935:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	425.7754821777344	2	425.773471	849.53239	-0.95445	-0.00040638	4.1695	0.0017752	3.215	0.0013689	425.7751660668595	68.762	2.1455	66.142	65.721	67.866	-2.6203					132	42	5	0	0	0	0.61768	1	5479	5479		29.842	0	1	3515300			29891	7933	24534	24560	33129	33129					0.10160464770854105
LGLPLHQHRSQ	11	Unmodified	_LGLPLHQHRSQ_					0	0	0			REV__ENST00000533005.5_1_11:67811756-67818283:+|nuORF	REV__ENST00000533005.5_1_11:67811756-67818283:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	428.2515563964844	3	429.242311	1284.7051	0.41446	0.00017791	2.2841	0.00098044	2.6986	0.0011583	429.2431353903312	67.366	0.7456	67.366	67.096	67.842	0					40	18	3	0	0	0	0.026079	1	6338	6338		19.263	9.6165	1	1621100	+		29892	27250	24535	24561	33130	33130					0.07413804160114523
LGLPNRLP	8	Unmodified	_LGLPNRLP_					0	0	0		chr20:1163183-1164392|140|75.06|0.65|6.86|+|2|PSMF1,None|2	chr20:1163183-1164392|140|75.06|0.65|6.86|+|2|PSMF1,None|2	chr20:1163183-1164392|140|75.06|0.65|6.86|+|2|PSMF1,None|2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	441.2408752441406	2	440.27417	878.533787	-0.85782	-0.00037767	0.83691	0.00036847	-0.020903	-9.2029E-06	440.27448067049585	69.643	1.5537	66.162	65.861	67.415	-3.4812					80	31	4	0	0	0	0.028476	1	5248	5248		46.766	4.292	1	1986400			29893	451	24536	24562	33131	33131					0.08966098859605154
LGLPRLGLR	9	Unmodified	_LGLPRLGLR_					0	0	0		ENST00000463287.1_1_22:38508170-38508779:-|nuORF	ENST00000463287.1_1_22:38508170-38508779:-|nuORF	ENST00000463287.1_1_22:38508170-38508779:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	497.2962341308594	2	497.829643	993.644734	-1.0535	-0.00052446	0.80766	0.00040207	-0.24583	-0.00012238	497.8299189635917	76.877	1.5442	74.506	74.033	75.577	-2.3715					72	29	4	0	0	0	0.027462	1	3961	3961		42.396	8.8806	1	200560			29894	12222	24537	24563	33132	33132					0.14765738567700737
LGLQSHLLT	9	Unmodified	_LGLQSHLLT_					0	0	0		ENST00000421767.1_1_7:65842866-65843457:-|nuORF	ENST00000421767.1_1_7:65842866-65843457:-|nuORF	ENST00000421767.1_1_7:65842866-65843457:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.3194885253906	2	491.290017	980.565481	-0.020784	-1.0211E-05	1.7704	0.00086976	1.7496	0.00085955	491.28983099813416	103.12	1.3071	100.92	100.31	101.61	-2.1994					68	24	5	0	0	0	0.027462	1	9360	9360		6.7355	0	1	151470			29895	11686	24538	24564	33133	33133					0.07442046822893644
LGLRLLAPL	9	Unmodified	_LGLRLLAPL_					0	0	0		ENST00000477288.5_1_6:30884740-30893984:+|nuORF;nc|ENSG00000137411|Q5ST30-3|VARS2;ENSG00000137411|ENST00000676266|VARS2;nc|ENSG00000137411|Q5ST30-4|VARS2;ENST00000473916.1_1_6:30891971-30893984:+|nuORF;nc|ENSG00000137411|Q5ST30-2|VARS2;ENST00000469358.5_1_6:30889720-30893984:+|nuORF	ENST00000477288.5_1_6:30884740-30893984:+|nuORF	ENST00000477288.5_1_6:30884740-30893984:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.758056640625	2	483.328945	964.643337	3.1491	0.0015221	-3.2553	-0.0015734	-0.10623	-5.1343E-05	483.32725874201464	134.21	0.49551	132.68	132.44	132.93	-1.5257					11	9	2	0	0	0	0.027462	1	12939	12939		7.6903	0	1	11129			29896	4581	24539	24565	33134	33134					0.1596010447893832
LGLSHCMDNR	10	Unmodified	_LGLSHCMDNR_					0	0	0			REV__ENSG00000110448|ENST00000347785|CD5	REV__ENSG00000110448|ENST00000347785|CD5	MULTI-MSMS	OvCa9_classI_Rep3	3	573.265625	2	573.26315	1144.51175	-1.1346	-0.00065042	3.5476	0.0020337	2.413	0.0013833	573.2650867450923	75.643	1.1272	73.232	72.919	74.046	-2.4106					58	21	4	0	0	0	0.42082	1	3849	3849		65.465	5.3471	1	348020	+		29897	17986	24540	24566	33135	33135					-0.05472816942778991
LGLSLLWTVLL	11	Unmodified	_LGLSLLWTVLL_					0	0	0		ENST00000445836.5_2_22:21057761-21058775:+|nuORF;nc|ENSG00000206140|A6NGB0-1|TMEM191C;ENSG00000206140|ENST00000536718|TMEM191C;ENSG00000278558|ENST00000612978|TMEM191B	ENST00000445836.5_2_22:21057761-21058775:+|nuORF	ENST00000445836.5_2_22:21057761-21058775:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	614.3859252929688	2	614.389199	1226.76385	-4.8757	-0.0029956	-1.7526	-0.0010768	-6.6283	-0.0040724	614.3879084256669	157.16	1.131	155.99	155.65	156.79	-1.1707					59	27	4	0	0	0	0.72459	1	13541	13541		20.947	1.8434	1	104880			29898	9094	24541	24567	33136	33136					0.15953467681879374
LGLSSDRHKI	10	Unmodified	_LGLSSDRHKI_					0	0	0			REV__ENST00000481328.7_1_11:76905078-76923312:+|nuORF	REV__ENST00000481328.7_1_11:76905078-76923312:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	563.3187255859375	2	563.32238	1124.63021	-6.0709	-0.0034199	-0.15013	-8.4571E-05	-6.221	-0.0035044	563.322073230946	155.76	0.93549	154.68	154.4	155.34	-1.073					61	26	3	0	0	0	0.64697	1	13399	13399		36.447	3.6343	1	103840	+		29899	26476	24542	24568	33137	33137					0.07287621628893248
LGLTDDPQ	8	Unmodified	_LGLTDDPQ_					0	0	0		ENSG00000197706|ENST00000343399|OR6C74;ENSG00000188324|ENST00000358433|OR6C6	ENSG00000197706|ENST00000343399|OR6C74	ENSG00000197706|ENST00000343399|OR6C74	MULTI-MSMS	OvCa99_classI_Rep5	1	429.71435546875	2	429.713808	857.413062	-0.81397	-0.00034977	2.397	0.00103	1.583	0.00068025	429.7147287571825	27.517	0.35027	27.517	27.341	27.691	0					13	6	3	0	0	0	0.74229	1	823	823		30.504	0	1	100610			29900	8466	24543	24569	33138	33138					-0.021347736445136434
LGLTLAAPL	9	Unmodified	_LGLTLAAPL_					0	0	0		ENST00000377990.6_2_2:65296717-65296849:+|nuORF	ENST00000377990.6_2_2:65296717-65296849:+|nuORF	ENST00000377990.6_2_2:65296717-65296849:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	434.7818298339844	2	434.778754	867.542954	0.59338	0.00025799	2.5222	0.0010966	3.1156	0.0013546	434.77972788818795	57.249	1.9714	53.904	53.425	55.397	-3.3449					103	38	4	0	0	0	0.50066	1	3706	3706		42.474	7.2737	1	352580			29901	11096	24544	24570	33139	33139					0.10388447425270897
LGLTLAAPL	9	Unmodified	_LGLTLAAPL_					0	0	0		ENST00000377990.6_2_2:65296717-65296849:+|nuORF	ENST00000377990.6_2_2:65296717-65296849:+|nuORF	ENST00000377990.6_2_2:65296717-65296849:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	434.778754	867.542954	-0.06053	-2.6317E-05	3.176	0.0013809	3.1155	0.0013545	434.7801603129383	53.573	0.38602	53.573	53.347	53.733	0	-0.20116	2.6964E-05	NaN	42.474	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	399700			29902	11096	24544	24570							0.10388447425270897
LGLTLAAPL	9	Unmodified	_LGLTLAAPL_					0	0	0		ENST00000377990.6_2_2:65296717-65296849:+|nuORF	ENST00000377990.6_2_2:65296717-65296849:+|nuORF	ENST00000377990.6_2_2:65296717-65296849:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	434.778754	867.542954	-0.48498	-0.00021086	3.6911	0.0016048	3.2061	0.001394	434.7802589078916	56.649	1.9357	53.845	53.225	55.161	-2.804	0.070967	0.00047488	NaN	42.474	98	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165960			29903	11096	24544	24570							0.10388447425270897
LGLVSMLLIWC	11	Unmodified	_LGLVSMLLIWC_					0	0	0		ENST00000417185.6_1_3:38049657-38049795:-|nuORF	ENST00000417185.6_1_3:38049657-38049795:-|nuORF	ENST00000417185.6_1_3:38049657-38049795:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	624.3468017578125	2	624.348163	1246.68177	-3.342	-0.0020866	2.667	0.0016651	-0.67498	-0.00042142	624.3496551977445	148.78	1.3991	147.83	147.15	148.55	-0.9512					58	27	3	0	0	0	0.70518	1	12573	12573		27.882	1.0861	1	93990			29904	11617	24545	24571	33140	33140					0.06829906006964848
LGMLFFVLV	9	Unmodified	_LGMLFFVLV_					0	0	0			REV__ENSG00000164620|ENST00000297164|RELL2	REV__ENSG00000164620|ENST00000297164|RELL2	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.8106079101562	2	519.806457	1037.59836	-0.076857	-3.9951E-05	3.5729	0.0018572	3.496	0.0018172	519.807355514733	98.476	1.3284	97.583	96.578	97.907	-0.89305					36	26	2	0	0	0	0.027462	1	8832	8832		29.842	8.1392	1	95311	+		29905	21004	24546	24572	33141	33141					0.08106537621392818
LGNAGEGVV	9	Unmodified	_LGNAGEGVV_					0	0	0			REV__tr|A0A553SN48|A0A553SN48_NIACIResponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_23620PE=4SV=1	REV__tr|A0A553SN48|A0A553SN48_NIACIResponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_23620PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	408.2176208496094	2	408.216517	814.418482	0.71948	0.0002937	-0.50762	-0.00020722	0.21186	8.6484E-05	408.21624875687326	53.81	0.68904	53.81	53.564	54.253	0					52	16	4	0	0	0	0.21395	1	4319	4319		73.975	5.49	1	4510400	+		29906	30392	24547	24573	33142	33142					0.003849499379725785
LGNALANAS	9	Unmodified	_LGNALANAS_					0	0	0			REV__SPTBN2|p.R1805Qfs*108|1|0.25|ENSG00000173898|chr11:66691414-66691435|TGGCGTGCCCCGTGCAGGAAGC/-|frameshift_variant	REV__SPTBN2|p.R1805Qfs*108|1|0.25|ENSG00000173898|chr11:66691414-66691435|TGGCGTGCCCCGTGCAGGAAGC/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	415.72076416015625	2	415.721967	829.429381	-0.9299	-0.00038658	0.71722	0.00029816	-0.21268	-8.8416E-05	415.7221307706575	120.37	1.5373	119.02	118.72	120.26	-1.3444					61	29	4	0	0	0	0.59983	1	11350	11350		31.955	1.4512	1	298300	+		29907	21807	24548	24574	33143	33143					0.007843523122346596
LGNRDNGPEV	10	Unmodified	_LGNRDNGPEV_					0	0	0			REV__POU2F3|p.S319Pfs*7|1|0.3|ENSG00000137709|chr11:120309473-120309473|T/-|frameshift_variant	REV__POU2F3|p.S319Pfs*7|1|0.3|ENSG00000137709|chr11:120309473-120309473|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	535.763671875	2	535.764894	1069.51524	0.74915	0.00040137	-4.4523	-0.0023854	-3.7031	-0.001984	535.76248491945	78.562	2.0989	76.209	75.85	77.949	-2.3527					134	41	5	0	0	0	0.30325	3	4201	4172;4201;4208		80.455	10.827	1	1834000	+		29908	19468	24549	24575	33144;33145;33146	33145					-0.016741075729214572
LGNRDNGPEV	10	Unmodified	_LGNRDNGPEV_					0	0	0			REV__POU2F3|p.S319Pfs*7|1|0.3|ENSG00000137709|chr11:120309473-120309473|T/-|frameshift_variant	REV__POU2F3|p.S319Pfs*7|1|0.3|ENSG00000137709|chr11:120309473-120309473|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.7643432617188	2	535.764894	1069.51524	-1.1202	-0.00060017	-3.4079	-0.0018258	-4.5281	-0.002426	535.7630134743931	79.197	2.0761	76.446	76.132	78.208	-2.7514					95	42	4	0	0	0	0.34811	1	6406	6406		75.043	1.0686	1	1904000	+		29909	19468	24549	24575	33147	33147					-0.016741075729214572
LGPAVLKEL	9	Unmodified	_LGPAVLKEL_					0	0	0			REV__ENST00000535784.6_1_10:16528369-16528444:+|nuORF	REV__ENST00000535784.6_1_10:16528369-16528444:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	470.2962951660156	2	470.29731	938.580068	-0.49251	-0.00023162	-2.9033	-0.0013654	-3.3958	-0.001597	470.29591238963496	32.315	1.7376	29.606	29.382	31.119	-2.7097					90	34	5	0	0	0	0.59983	1	1128	1128		31.955	0	1	1326000	+		29910	27290	24550	24576	33148	33148					0.10832118971029558
LGPDGKPGRP	10	Unmodified	_LGPDGKPGRP_					0	0	0			REV__ENSG00000114270|ENST00000681320|COL7A1	REV__ENSG00000114270|ENST00000681320|COL7A1	MSMS	OvCa9_classI_Rep4_	4	497.2736511230469	2	497.277441	992.540328	NaN	NaN	NaN	NaN	NaN	NaN	NaN	157.7	1	156.15	155.65	156.65	-1.545								0	0	0	0.14049	1	15590	15590		23.042	4.7181	1		+		29911	18183	24551	24577	33149	33149					0.04375992020322883
LGPGLRVL	8	Unmodified	_LGPGLRVL_					0	0	0		ENSG00000128311|ENST00000249042|TST	ENSG00000128311|ENST00000249042|TST	ENSG00000128311|ENST00000249042|TST	MULTI-MSMS	OvCa9_classI_Rep2	2	412.7710266113281	2	412.771263	823.527973	1.187	0.00048995	-0.67717	-0.00027952	0.5098	0.00021043	412.77082954843223	92.604	1.5518	91.436	91.024	92.575	-1.168					68	29	4	0	0	0	0.68312	1	8256	8256		46.766	2.2354	1	349930			29912	3877	24552	24578	33150	33150					0.1091500034793853
LGPHAPKLGF	10	Unmodified	_LGPHAPKLGF_					0	0	0			REV__ENST00000380637.7_1_21:40887043-40887124:+|nuORF	REV__ENST00000380637.7_1_21:40887043-40887124:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.7504272460938	2	518.800552	1035.58655	-0.46944	-0.00024355	-4.1791	-0.0021681	-4.6485	-0.0024117	518.7984380485965	48.152	0.71509	45.045	44.838	45.553	-3.1077					21	13	2	0	0	0	0.026982	1	2684	2684		16.473	1.6083	1	33667	+		29913	25181	24553	24579	33151	33151					0.07018056922402138
LGPQAPGCI	9	Unmodified	_LGPQAPGCI_					0	0	0		ENSG00000260903|ENST00000562532|XKR7	ENSG00000260903|ENST00000562532|XKR7	ENSG00000260903|ENST00000562532|XKR7	MULTI-MSMS	OvCa9_classI_Rep3	3	428.2220458984375	2	428.223288	854.432024	2.1294	0.00091187	-2.0334	-0.00087077	0.095985	4.1103E-05	428.2222618775492	62.473	1.7234	59.439	58.937	60.66	-3.0339					58	35	3	0	0	0	0.58665	1	2233	2233		33.516	3.674	1	42700			29914	9496	24554	24580	33152	33152					-0.00101515554456455
LGPRLGPT	8	Unmodified	_LGPRLGPT_					0	0	0			REV__TLE1|p.I582Sfs*27|1|0.16|ENSG00000196781|chr9:81590891-81590891|G/-|frameshift_variant	REV__TLE1|p.I582Sfs*27|1|0.16|ENSG00000196781|chr9:81590891-81590891|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	406.21575927734375	2	405.745245	809.475937	0.21394	8.6806E-05	0.34665	0.00014065	0.56059	0.00022746	405.7449481288192	61.071	0.631	58.301	58.083	58.714	-2.7702					14	11	2	0	0	0	0.028476	1	4525	4525		38.806	0	1	12333	+		29915	22864	24555	24581	33153	33153					0.06357836934193983
LGPRTPAPS	9	Unmodified	_LGPRTPAPS_					0	0	0		ENST00000511185.5_1_4:2814082-2826487:+|nuORF;nc|ENSG00000087266|P78314-3|SH3BP2	ENST00000511185.5_1_4:2814082-2826487:+|nuORF;nc|ENSG00000087266|P78314-3|SH3BP2	ENST00000511185.5_1_4:2814082-2826487:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	448.2540283203125	2	448.253434	894.492316	2.7058	0.0012129	-0.5117	-0.00022937	2.1941	0.00098353	448.2531709057534	77.302	0.41634	77.302	77.085	77.501	0					19	9	3	0	0	0	0.21231	1	7795	7795		74.255	7.8258	1	354550			29916	12981;14908	24556	24582	33154	33154					0.040849181002727164
LGQAQRIL	8	Unmodified	_LGQAQRIL_					0	0	0			REV__nc|ENSG00000108506|Q9H0H0|INTS2	REV__nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-MSMS	OvCa9_classI_Rep2	2	449.77874755859375	2	449.777077	897.5396	2.9918	0.0013456	1.4706	0.00066145	4.4624	0.0020071	449.77757313499694	111.64	1.1333	111.5	111.03	112.16	-0.13961					67	22	4	0	0	0	0.57878	1	10535	10535		68.485	0	1	512060	+		29917	17891	24557	24583	33155	33155					0.08673197371274455
LGQLFYRR	8	Unmodified	_LGQLFYRR_					0	0	0		ENST00000568805.5_1_16:20810381-20812539:-|nuORF	ENST00000568805.5_1_16:20810381-20812539:-|nuORF	ENST00000568805.5_1_16:20810381-20812539:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.7767944335938	2	526.803626	1051.5927	-1.3775	-0.00072569	0.1505	7.9286E-05	-1.227	-0.0006464	526.8031423024756	53.445	0.5948	50.631	50.28	50.875	-2.8139					16	11	2	0	0	0	0.028476	1	3577	3577		18.324	0.95945	1	24903			29918	13873	24558	24584	33156	33156					0.06896575153928097
LGQLPVRSLP	10	Unmodified	_LGQLPVRSLP_					0	0	0		ENST00000568202.5_1_16:5078111-5083423:-|nuORF	ENST00000568202.5_1_16:5078111-5083423:-|nuORF	ENST00000568202.5_1_16:5078111-5083423:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.33056640625	2	540.332216	1078.64988	0.34656	0.00018726	-4.1131	-0.0022225	-3.7666	-0.0020352	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.69073	1	13769	13769		31.53	3.6476	1	342200			29919	13866	24559	24585	33157	33157					0.11369997639667417
LGQLVVTYVV	10	Unmodified	_LGQLVVTYVV_					0	0	0		ENST00000409074.6_2_14:104056781-104056841:+|nuORF	ENST00000409074.6_2_14:104056781-104056841:+|nuORF	ENST00000409074.6_2_14:104056781-104056841:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	545.828857421875	2	545.828975	1089.6434	1.6287	0.00088901	2.923	0.0015955	4.5518	0.0024845	545.8295805537248	125.34	0.75556	125.34	125.14	125.9	0					31	18	2	0	0	0	0.67931	1	14492	14492		32.812	7.2384	1	139680			29920	11512	24560	24586	33158	33158					0.10216059688264068
LGQPASWP	8	Unmodified	_LGQPASWP_					0	0	0		ENST00000427522.6_1_20:62190209-62190602:-|nuORF	ENST00000427522.6_1_20:62190209-62190602:-|nuORF	ENST00000427522.6_1_20:62190209-62190602:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	428.22247314453125	2	428.221603	854.428653	2.1294	0.00091187	1.9024	0.00081464	4.0318	0.0017265	428.2222618775492	62.473	1.7234	59.439	58.937	60.66	-3.0339					58	35	3	0	0	0	0.73626	1	2297	2297		33.516	0	1	42700			29921	11756	24561	24587	33159	33159					-0.004384423368151147
LGQPFAVPEG	10	Unmodified	_LGQPFAVPEG_					0	0	0			REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7663879394531	2	507.766374	1013.5182	0.43978	0.0002233	-0.32354	-0.00016428	0.11624	5.9022E-05	507.76605298589374	131.19	1.6749	130.96	130.26	131.93	-0.22696					79	33	3	0	0	0	0.66721	1	12911	12911		34.173	1.3601	1	124560	+		29922	17348	24562	24588	33160	33160					0.01197767551900597
LGQQLHLS	8	Unmodified	_LGQQLHLS_					0	0	0		ENST00000473097.5_1_1:1288733-1289815:-|nuORF	ENST00000473097.5_1_1:1288733-1289815:-|nuORF	ENST00000473097.5_1_1:1288733-1289815:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	448.2535095214844	2	448.253434	894.492316	0.63015	0.00028247	-0.48406	-0.00021698	0.14609	6.5484E-05	448.253089882822	31.832	0.79397	31.832	31.509	32.303	0					38	15	4	0	0	0	0.32444	1	1339	1339		102.77	9.5779	1	500170			29923	12404	24563	24589	33161	33161					0.04084918100284085
LGQRVLDEL	9	Unmodified	_LGQRVLDEL_					0	0	0		LETM1|p.K483Rfs*16|1|0.24|ENSG00000168924|chr4:1823007-1823016|TGCAGCTCCT/-|frameshift_variant;ENSG00000168924|ENST00000302787|LETM1;nc|ENSG00000168924|O95202-2|LETM1;ENST00000505551.5_1_4:1836565-1844755:-|nuORF;nc|ENSG00000168924|O95202-3|LETM1;ENST00000466175.5_1_4:1836565-1857677:-|nuORF	LETM1|p.K483Rfs*16|1|0.24|ENSG00000168924|chr4:1823007-1823016|TGCAGCTCCT/-|frameshift_variant	LETM1|p.K483Rfs*16|1|0.24|ENSG00000168924|chr4:1823007-1823016|TGCAGCTCCT/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.282958984375	2	521.798206	1041.58186	-1.0973	-0.00057256	3.222	0.0016813	2.1248	0.0011087	521.8015797913462	70.779	0.23637	67.323	67.203	67.44	-3.4563					5	4	2	0	0	0	0.027462	1	5356	5356		56.721	8.8055	1	18140			29924	6957	24564	24590	33162	33162					0.0627312798899311
LGQVECWQP	9	Unmodified	_LGQVECWQP_					0	0	0			REV__ULBP1|p.K147Tfs*26|1|0.05|ENSG00000111981|chr6:149969174-149969175|-/CCACACAAAAC|frameshift_variant	REV__ULBP1|p.K147Tfs*26|1|0.05|ENSG00000111981|chr6:149969174-149969175|-/CCACACAAAAC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.8101196289062	2	530.250034	1058.48552	-0.53318	-0.00028272	2.9781	0.0015791	2.4449	0.0012964	530.2519157279261	81.589	0.70128	79.266	79.007	79.708	-2.3226					18	13	3	0	0	0	0.027447	1	4520	4520		56.721	5.3856	1	16020	+		29925	18071	24565	24591	33163	33163					-0.04138762842603683
LGRARVPLLPL	11	Unmodified	_LGRARVPLLPL_					0	0	0		nc|ENSG00000092200|Q96KN7-3|RPGRIP1;nc|ENSG00000092200|Q96KN7-2|RPGRIP1;nc|ENSG00000092200|Q96KN7-5|RPGRIP1;ENSG00000092200|ENST00000400017|RPGRIP1;nc|ENSG00000092200|Q96KN7-6|RPGRIP1;RPGRIP1|p.K914Ifs*16|1|0.14|ENSG00000092200|chr14:21327651-21327661|GAAACCCAACG/-|frameshift_variant	nc|ENSG00000092200|Q96KN7-3|RPGRIP1	nc|ENSG00000092200|Q96KN7-3|RPGRIP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	602.8739624023438	2	602.898057	1203.78156	-1.2822	-0.00077306	3.9764	0.0023973	2.6941	0.0016243	602.9004231763228	103.43	0.19763	102.75	102.67	102.87	-0.68459					6	3	2	0	0	0	0.025298	1	9540	9540		47.657	14.845	1	9577			29926	1890	24566	24592	33164	33164					0.18782227727410827
LGRDAGEL	8	Unmodified	_LGRDAGEL_					0	0	0			REV__ENSG00000256812|ENST00000457326|CAPNS2	REV__ENSG00000256812|ENST00000457326|CAPNS2	MULTI-MSMS	OvCa9_classI_Rep2	2	415.7212219238281	2	415.721967	829.429381	-1.0163	-0.00042249	0.92585	0.0003849	-0.090424	-3.7591E-05	415.72221629127785	119.3	1.3301	119.13	118.81	120.14	-0.17138					54	26	3	0	0	0	0.74229	1	11470	11470		30.504	0.6621	1	206540	+		29927	23539	24567	24593	33165	33165					0.00784352312223291
LGRDVEQLY	9	Unmodified	_LGRDVEQLY_					0	0	0			REV__chr2:95279121-95279845|96|20.27|0.96|4.41|+|0|None,PROM2|1	REV__chr2:95279121-95279845|96|20.27|0.96|4.41|+|0|None,PROM2|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	547.3394775390625	2	546.787838	1091.56112	0.57001	0.00031167	-0.31902	-0.00017443	0.25099	0.00013724	546.7875739440075	71.469	0.73592	68.962	68.541	69.277	-2.5071					23	13	2	0	0	0	0.027461	1	5730	5730		49.442	1.7842	1	24025	+		29928	16008	24568	24594	33166	33166					0.019005376093446102
LGRDVPVFV	9	Unmodified	_LGRDVPVFV_					0	0	0		sp|Q6SW65|CVC2_HCMVMCapsidvertexcomponent2OS=Humancytomegalovirus(strainMerlin)OX=295027GN=CVC2PE=3SV=1;sp|P16726|CVC2_HCMVACapsidvertexcomponent2OS=Humancytomegalovirus(strainAD169)OX=10360GN=CVC2PE=1SV=1	sp|Q6SW65|CVC2_HCMVMCapsidvertexcomponent2OS=Humancytomegalovirus(strainMerlin)OX=295027GN=CVC2PE=3SV=1	sp|Q6SW65|CVC2_HCMVMCapsidvertexcomponent2OS=Humancytomegalovirus(strainMerlin)OX=295027GN=CVC2PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	501.2897644042969	2	501.292559	1000.57057	-0.80197	-0.00040202	-3.5119	-0.0017605	-4.3139	-0.0021625	501.2906816095173	135.63	4.8104	135.4	133.71	138.52	-0.22697					221	98	3	0	0	0	0.65476	1	13692	13692		25.45	1.2474	1	70595			29929	32891	24569	24595	33167	33167					0.07030350685522535
LGRGGVLLDI	10	Unmodified	_LGRGGVLLDI_					0	0	0		ENST00000475470.1_1_3:9882101-9883869:-|nuORF	ENST00000475470.1_1_3:9882101-9883869:-|nuORF	ENST00000475470.1_1_3:9882101-9883869:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.8114929199219	2	506.811116	1011.60768	-0.91945	-0.00046599	-1.1845	-0.0006003	-2.1039	-0.0010663	506.81048510289196	101.22	3.3613	98.954	98.29	101.65	-2.2665					172	65	4	0	0	0	0.47142	1	9220	9220		58.23	3.5076	1	2669900			29930	12448	24570	24596	33168	33168					0.10234022231293238
LGRGPSIR	8	Unmodified	_LGRGPSIR_					0	0	0			REV__ENST00000568188.1_1_16:31499896-31500223:+|nuORF	REV__ENST00000568188.1_1_16:31499896-31500223:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	428.2613525390625	2	428.261594	854.508634	-2.1797	-0.00093349	2.171	0.00092976	-0.0087153	-3.7324E-06	428.2624599299376	144.02	1.6837	143.79	143.2	144.88	-0.22697					114	33	5	0	0	0	0.74754	1	14481	14481		27.882	2.4321	1	330270	+		29931	27711	24571	24597	33169	33169					0.0755604405703707
LGRGQRRL	8	Unmodified	_LGRGQRRL_					0	0	0		ENST00000243253.7_1_3:127771282-127774410:+|nuORF	ENST00000243253.7_1_3:127771282-127774410:+|nuORF	ENST00000243253.7_1_3:127771282-127774410:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	478.301513671875	2	478.299042	954.583531	1.6613	0.0007946	3.315	0.0015856	4.9763	0.0023802	478.3004731916248	119.84	0.62885	119.84	119.56	120.18	0					33	14	3	0	0	0	0.62934	1	13753	13753		57.811	3.035	1	883470			29932	9765	24572	24598	33170	33170					0.10442226588270387
LGRGRGHL	8	Unmodified	_LGRGRGHL_					0	0	0			REV__ENST00000592044.1_1_19:55591872-55591977:+|nuORF	REV__ENST00000592044.1_1_19:55591872-55591977:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	433.256103515625	2	433.259385	864.504218	-5.7476	-0.0024902	-4.1265	-0.0017878	-9.8741	-0.004278	433.25778720504144	164.1	0.24614	162.46	162.36	162.61	-1.6336					19	5	4	0	0	0	0.74679	1	16206	16206		28.254	6.5519	1	709030	+		29933	27942	24573	24599	33171	33171					0.06654579634130187
LGRGVARAV	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LGRGVARAV_					1	0	0		ENST00000274853.7_1_6:30654254-30654479:-|nuORF	ENST00000274853.7_1_6:30654254-30654479:-|nuORF	ENST00000274853.7_1_6:30654254-30654479:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	470.78790283203125	2	470.787976	939.561398	0.23229	0.00010936	-0.89827	-0.0004229	-0.66598	-0.00031354	470.78745923109625	40.781	2.1682	38.071	37.601	39.769	-2.7097					104	43	4	0	0	0	0.36502	3	2070	2070;2091;2103		55.504	11.423	1	1630700			29934	10023	24574	24600	33172;33173;33174	33172					0.0892000211983941
LGRGVARAV	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LGRGVARAV_					1	0	0		ENST00000274853.7_1_6:30654254-30654479:-|nuORF	ENST00000274853.7_1_6:30654254-30654479:-|nuORF	ENST00000274853.7_1_6:30654254-30654479:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.7870788574219	2	470.787976	939.561398	-0.18553	-8.7345E-05	-1.1363	-0.00053496	-1.3218	-0.00062231	470.78744487463723	40.717	3.4773	37.763	37.112	40.589	-2.9541					147	66	5	0	0	0	0.27546	2	1813	1813;1838		65.803	11.027	1	6500500			29935	10023	24574	24600	33175;33176	33175					0.0892000211983941
LGRIDLLIL	9	Unmodified	_LGRIDLLIL_					0	0	0			REV__ENST00000341164.8_1_19:58490456-58490597:-|nuORF	REV__ENST00000341164.8_1_19:58490456-58490597:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.3394165039062	2	513.33951	1024.66447	2.6815	0.0013765	-2.5383	-0.001303	0.14319	7.3504E-05	513.3381393723276	135.21	0.89005	133.67	133.41	134.3	-1.5437					27	15	2	0	0	0	0.42676	1	13092	13092		49.442	1.7842	1	56302	+		29936	24631	24575	24601	33177	33177					0.15312069787819382
LGRIRGQVHA	10	Unmodified	_LGRIRGQVHA_					0	0	0		tr|A0A7D7ACB0|A0A7D7ACB0_9CLOTProbableseptumsite-determiningproteinMinCOS=ClostridiumintestinaleOX=36845GN=minCPE=3SV=1	tr|A0A7D7ACB0|A0A7D7ACB0_9CLOTProbableseptumsite-determiningproteinMinCOS=ClostridiumintestinaleOX=36845GN=minCPE=3SV=1	tr|A0A7D7ACB0|A0A7D7ACB0_9CLOTProbableseptumsite-determiningproteinMinCOS=ClostridiumintestinaleOX=36845GN=minCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8321533203125	2	553.830706	1105.64686	1.4061	0.00077877	-2.5843	-0.0014313	-1.1781	-0.00065248	553.8291816775361	139.45	3.0735	137.95	136.76	139.84	-1.4952					150	61	3	0	0	0	0.74374	1	13639	13639		25.574	4.6271	1	110800			29937	36225	24576	24602	33178	33178					0.09826167305527633
LGRKLAGKV	9	Unmodified	_LGRKLAGKV_					0	0	0			REV__ENSG00000180042|ENST00000572493|OR1R1P	REV__ENSG00000180042|ENST00000572493|OR1R1P	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.7961120605469	2	471.316369	940.618185	0.032718	1.5421E-05	-1.0359	-0.00048822	-1.0031	-0.0004728	471.31573537538065	80.102	0.8315	77.392	77.171	78.003	-2.7106					24	16	2	0	0	0	0.027456	1	6587	6587		38.806	0	1	45244	+		29938	22153	24577	24603	33179	33179					0.14550049676358867
LGRLLTTCL	9	Unmodified	_LGRLLTTCL_					0	0	0		ENSG00000179832|ENST00000326134|MROH1;ENST00000536221.1_8:145474248-145485625:+|nuORF;nc|ENSG00000179832|Q8NDA8-3|MROH1	ENSG00000179832|ENST00000326134|MROH1	ENSG00000179832|ENST00000326134|MROH1	MULTI-MSMS	OvCa9_classI_Rep3	3	495.2919921875	2	495.294245	988.573937	-2.3996	-0.0011885	-1.0806	-0.00053522	-3.4802	-0.0017237	495.29351246323944	141.08	0.78638	140.05	139.82	140.61	-1.0339					29	15	3	0	0	0	0.67509	1	11659	11659		23.042	1.3402	1	55165			29939	7843	24578	24604	33180	33180					0.07919277467851771
LGRLQGVAAVP	11	Unmodified	_LGRLQGVAAVP_					0	0	0		ENST00000534797.5_1_11:502881-503247:-|nuORF	ENST00000534797.5_1_11:502881-503247:-|nuORF	ENST00000534797.5_1_11:502881-503247:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	540.8306274414062	2	540.82984	1079.64513	2.013	0.0010887	0.75549	0.00040859	2.7684	0.0014973	540.8302826822948	124.41	3.5435	123.37	123.03	126.57	-1.0377					194	67	5	0	0	0	0.62497	1	9750	9750		42.396	1.618	1	8697600			29940	13363	24579	24605	33181	33181					0.10849113496897189
LGRMRPKPLV	10	Unmodified	_LGRMRPKPLV_					0	0	0			REV__ENSG00000164919|ENST00000520468|COX6C	REV__ENSG00000164919|ENST00000520468|COX6C	MULTI-MSMS	OvCa9_classI_Rep4_	4	583.8585815429688	2	583.86316	1165.71177	-5.3703	-0.0031355	-2.0522	-0.0011982	-7.4224	-0.0043337	583.8618452827162	155.36	1.2983	153.87	153.54	154.84	-1.4911					100	37	4	0	0	0	0.78463	1	15398	15398		20.947	0.95016	1	230740	+		29941	21036	24580	24606	33182	33182					0.1355402578712983
LGRMVQLHLK	10	Unmodified	_LGRMVQLHLK_					0	0	0		nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-10|TCF4;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-2|TCF4;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-11|TCF4	nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-7|TCF4	nc|ENSG00000196628|P15884-7|TCF4	MULTI-MSMS	OvCa9_classI_Rep2	2	597.857421875	2	597.860618	1193.70668	-3.1765	-0.0018991	-3.8999	-0.0023316	-7.0765	-0.0042307	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.7759	1	15137	15137		21.96	3.6355	1	436470			29942	15243;15244	24581	24607	33183	33183					0.11757721924527686
LGRQAGPL	8	Unmodified	_LGRQAGPL_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.Q2480Lfs*11|1|0.07|ENSG00000103657|chr15:63674749-63674750|-/A|frameshift_variant;ENST00000560519.1_1_15:64026898-64041594:-|nuORF	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	406.2251281738281	2	406.24287	810.471186	1.7008	0.00069094	-1.7467	-0.0007096	-0.045919	-1.8654E-05	406.2419207814283	45.434	0.42203	45.434	45.245	45.667	0					16	9	2	0	0	0	0.028476	1	3138	3138		26.796	0	1	222840			29943	2336	24582	24608	33184	33184					0.05836952791423755
LGRSRLSAVLR	11	Unmodified	_LGRSRLSAVLR_					0	0	0		ENST00000204005.13_1_19:41111557-41112187:+|nuORF	ENST00000204005.13_1_19:41111557-41112187:+|nuORF	ENST00000204005.13_1_19:41111557-41112187:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	614.3841552734375	2	614.385845	1226.75714	-5.0786	-0.0031202	3.7715	0.0023171	-1.3071	-0.00080308	614.387997754013	157.04	0.77016	156.81	156.57	157.34	-0.22696					47	20	3	0	0	0	0.7253	1	15997	15997		11.636	0.53916	1	63796			29944	9649	24583	24609	33185	33185					0.15282967573875794
LGRTMKKLN	9	Unmodified	_LGRTMKKLN_					0	0	0		chr12:56110426-56110559|127|28.7|0.46|5.97|+|1|None,PA2G4|1	chr12:56110426-56110559|127|28.7|0.46|5.97|+|1|None,PA2G4|1	chr12:56110426-56110559|127|28.7|0.46|5.97|+|1|None,PA2G4|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2794189453125	2	530.818418	1059.62228	2.0322	0.0010788	3.562	0.0018908	5.5943	0.0029695	530.8200575941827	91.98	0.8867	91.98	91.415	92.301	0					54	20	3	0	0	0	0.027462	1	9940	9940		47.657	9.8458	1	1259500			29945	325	24584	24610	33186	33186					0.09485771107779328
LGRVCGTCAPP	11	Unmodified	_LGRVCGTCAPP_					0	0	0			REV__ENST00000594582.1_1_19:49218521-49220230:-|nuORF	REV__ENST00000594582.1_1_19:49218521-49220230:-|nuORF	MSMS	OvCa99_classI_Rep5	1	537.2676391601562	2	537.265161	1072.51577	NaN	NaN	NaN	NaN	NaN	NaN	NaN	156.54	1	156.54	156.04	157.04	0								0	0	0	0.16257	1	18343	18343		52.937	1.6012	1		+		29946	27982	24585	24611	33187	33187					-0.017587274490551863
LGRVDQYL	8	Unmodified	_LGRVDQYL_					0	0	0		tr|A0A7D6VTF3|A0A7D6VTF3_9CLOTGlycylradicalproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20705PE=4SV=1	tr|A0A7D6VTF3|A0A7D6VTF3_9CLOTGlycylradicalproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20705PE=4SV=1	tr|A0A7D6VTF3|A0A7D6VTF3_9CLOTGlycylradicalproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20705PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.2668151855469	2	482.266542	962.51853	-0.33974	-0.00016384	-0.77675	-0.0003746	-1.1165	-0.00053844	482.2658388333067	76.377	1.8145	73.438	72.985	74.799	-2.9389					82	37	3	0	0	0	0.60331	1	6062	6062		63.306	3.0123	1	1177500			29947	35110	24586	24612	33188	33188					0.03577187271753246
LGRWALSIGGL	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LGRWALSIGGL_					1	0	0		ENST00000575727.5_1_17:6905805-6915601:-|nuORF	ENST00000575727.5_1_17:6905805-6915601:-|nuORF	ENST00000575727.5_1_17:6905805-6915601:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	592.8436889648438	2	592.842948	1183.67134	-0.76875	-0.00045575	-3.0167	-0.0017884	-3.7854	-0.0022441	592.8411279684867	49.688	0.52539	49.688	49.462	49.988	0					27	11	3	0	0	0	0.25285	1	3733	3733		72.879	10.772	1	1089200			29948	13942	24587	24613	33189	33189					0.0868538266838641
LGSARAPAP	9	Unmodified	_LGSARAPAP_					0	0	0		ENST00000528318.5_1_8:42716773-42751856:-|nuORF;ENST00000526349.5_1_8:42729111-42751823:-|nuORF;ENST00000534961.5_1_8:42742976-42751856:-|nuORF	ENST00000528318.5_1_8:42716773-42751856:-|nuORF	ENST00000528318.5_1_8:42716773-42751856:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	420.2403869628906	2	420.240327	838.466101	-0.13393	-5.6284E-05	0.44162	0.00018559	0.30769	0.0001293	420.2403796182225	58.579	1.3779	55.799	55.285	56.662	-2.7801					64	26	3	0	0	0	0.56889	1	4243	4243		35.618	1.4457	1	306450			29949	13252	24588	24614	33190	33190					0.04040648928787505
LGSIDAVRH	9	Unmodified	_LGSIDAVRH_					0	0	0			REV__ENST00000492840.1_1_7:127544821-127568157:+|nuORF	REV__ENST00000492840.1_1_7:127544821-127568157:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	484.27001953125	2	484.269616	966.524678	1.8021	0.00087268	-3.5836	-0.0017354	-1.7816	-0.00086277	484.26751103209034	128.15	0.46855	128.15	127.95	128.42	0					18	9	3	0	0	0	0.42676	1	14852	14852		49.442	1.7842	1	68298	+		29950	26698	24589	24615	33191	33191					0.04007705503283887
LGSIDAVRH	9	Unmodified	_LGSIDAVRH_					0	0	0			REV__ENST00000492840.1_1_7:127544821-127568157:+|nuORF	REV__ENST00000492840.1_1_7:127544821-127568157:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	484.269616	966.524678	1.8021	0.00087268	-3.5836	-0.0017354	-1.7816	-0.00086277	484.26751103209034	128.15	0.46855	128.15	127.95	128.42	0	0	0	NaN	49.442	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68298	+		29951	26698	24589	24615							0.04007705503283887
LGSIIFRSII	10	Unmodified	_LGSIIFRSII_					0	0	0		nc|ENSG00000166762|Q96P56-3|CATSPER2;ENST00000469461.5_1_15:43927692-43940259:-|nuORF;nc|ENSG00000166762|Q96P56-2|CATSPER2;ENSG00000166762|ENST00000396879|CATSPER2	nc|ENSG00000166762|Q96P56-3|CATSPER2	nc|ENSG00000166762|Q96P56-3|CATSPER2	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.264892578125	2	559.850242	1117.68593	3.0195	0.0016905	-3.2668	-0.0018289	-0.24725	-0.00013842	560.3484618106653	86.293	0.39731	86.293	86.113	86.511	0					13	9	2	0	0	0	0.026994	1	9108	9108		25.574	3.8883	1	218260			29952	6708	24590	24616	33192	33192					0.13179454816531688
LGSILKHSSF	10	Unmodified	_LGSILKHSSF_					0	0	0		ENSG00000166454|ENST00000299575|ATMIN;ENST00000445995.2_1_9:98056039-98057089:+|nuORF;nc|ENSG00000166454|O43313-2|ATMIN	ENSG00000166454|ENST00000299575|ATMIN	ENSG00000166454|ENST00000299575|ATMIN	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2942504882812	2	544.808574	1087.60259	2.3879	0.001301	3.4681	0.0018895	5.856	0.0031904	544.8101805290554	80.564	0.51391	80.564	80.314	80.827	0					16	11	2	0	0	0	0.026982	1	8285	8285		23.042	2.0956	1	412010			29953	6683	24591	24617	33193	33193					0.062297183686723656
LGSKTFKNL	9	Unmodified	_LGSKTFKNL_					0	0	0			REV__nc|ENSG00000158623|Q9UBF2-2|COPG2	REV__nc|ENSG00000158623|Q9UBF2-2|COPG2	MULTI-MSMS	OvCa9_classI_Rep3	3	504.2975769042969	2	504.297842	1006.58113	-0.082287	-4.1497E-05	-0.36053	-0.00018182	-0.44282	-0.00022331	504.2976378271559	104.41	3.9037	102.97	102.5	106.4	-1.4347					184	75	5	0	0	0	0.44568	1	7259	7259		47.657	0	1	927760	+		29954	20575	24592	24618	33194	33194					0.0781033333993264
LGSLIGVHGAL	11	Unmodified	_LGSLIGVHGAL_					0	0	0		nc|ENSG00000079337|O95398-2|RAPGEF3	nc|ENSG00000079337|O95398-2|RAPGEF3	nc|ENSG00000079337|O95398-2|RAPGEF3	MULTI-MSMS	OvCa9_classI_Rep2	2	518.8077392578125	2	518.811116	1035.60768	1.8637	0.00096692	-2.8661	-0.001487	-1.0023	-0.00052003	518.8096777874774	87.789	3.0579	86.358	85.791	88.849	-1.4311					163	61	6	0	0	0	0.54764	1	7740	7740		49.442	1.7842	1	5567100			29955	14897	24593	24619	33195	33195					0.09130022231283874
LGSLWRRPPL	10	Unmodified	_LGSLWRRPPL_					0	0	0			REV__ENST00000395863.7_1_20:55841273-55841597:-|nuORF	REV__ENST00000395863.7_1_20:55841273-55841597:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8553466796875	2	597.858932	1193.70331	-2.8966	-0.0017318	-1.4643	-0.00087543	-4.3609	-0.0026072	597.8578774207725	151.94	0.86153	150.51	150.22	151.08	-1.4351					43	18	3	0	0	0	0.72319	1	15006	15006		27.882	8.7787	1	32541	+		29956	25322	24594	24620	33196	33196					0.11420795142180395
LGSMVLEVTR	10	Unmodified	_LGSMVLEVTR_					0	0	0		ENSG00000156574|ENST00000287139|NODAL;SAR1A-NODAL|1|fusion	ENSG00000156574|ENST00000287139|NODAL	ENSG00000156574|ENST00000287139|NODAL	MULTI-MSMS	OvCa99_classI_Rep5	1	552.8063354492188	2	552.807716	1103.60088	-0.77938	-0.00043085	-3.2196	-0.0017798	-3.999	-0.0022107	552.8058820436016	39.843	1.3399	39.843	39.63	40.969	0					74	29	5	0	0	0	0.42962	1	2413	2413		64.207	4.2765	1	15755000			29957	5849	24595	24621	33197	33197					0.05322341288388088
LGSPLRRSIS	10	Unmodified	_LGSPLRRSIS_					0	0	0		ENSG00000146005|ENST00000274710|PSD2	ENSG00000146005|ENST00000274710|PSD2	ENSG00000146005|ENST00000274710|PSD2	MULTI-SECPEP	OvCa9_classI_Rep3	3	542.8103637695312	2	543.324922	1084.63529	0.052207	2.8366E-05	0.81161	0.00044097	0.86381	0.00046933	543.3248179859064	73.414	0.59728	70.927	70.677	71.275	-2.4873					16	11	2	0	0	0	0.026956	1	3559	3559		26.693	0	1	22341			29958	5259	24596	24622	33198	33198					0.09635925491511443
LGSRDPSVSVS	11	Unmodified	_LGSRDPSVSVS_					0	0	0		ENST00000592843.1_1_19:1239029-1239436:+|nuORF	ENST00000592843.1_1_19:1239029-1239436:+|nuORF	ENST00000592843.1_1_19:1239029-1239436:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.3245239257812	2	552.288202	1102.56185	-0.62991	-0.00034789	3.3792	0.0018663	2.7493	0.0015184	552.2900531689733	29.122	0.19978	29.122	29.037	29.237	0					5	3	2	0	0	0	0.02605	1	1006	1006		30.318	15.453	1	18938			29959	14142	24597	24623	33199	33199					0.014673322583803383
LGSREAKLR	9	Unmodified	_LGSREAKLR_					0	0	0		ENST00000378164.6_1_8:120844797-120844887:-|nuORF	ENST00000378164.6_1_8:120844797-120844887:-|nuORF	ENST00000378164.6_1_8:120844797-120844887:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.2896728515625	2	515.311815	1028.60908	2.317	0.001194	-3.8508	-0.0019844	-1.5338	-0.00079039	515.3097967693722	98.857	0.85457	98.857	98.506	99.361	0					27	20	2	0	0	0	0.027447	1	10892	10892		31.53	0	1	347120			29960	11104	24598	24624	33200	33200					0.09591656320026232
LGSRRVGGLL	10	Unmodified	_LGSRRVGGLL_					0	0	0		ENSG00000105429|ENST00000251268|MEGF8;nc|ENSG00000105429|Q7Z7M0-2|MEGF8;MEGF8|p.R1953Pfs*3|1|0.11|ENSG00000105429|chr19:42362390-42362391|-/C|frameshift_variant	ENSG00000105429|ENST00000251268|MEGF8	ENSG00000105429|ENST00000251268|MEGF8	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.282958984375	2	514.322183	1026.62981	-0.35443	-0.00018229	-0.46996	-0.00024171	-0.82439	-0.000424	514.3219233996193	56.298	0.20173	56.298	56.22	56.422	0					7	4	2	0	0	0	0.02661	1	4667	4667		40.778	0	1	107980			29961	2459	24599	24625	33201	33201					0.11756246699724215
LGSSILAIAP	10	Unmodified	_LGSSILAIAP_					0	0	0			REV__tr|A0A553SP76|A0A553SP76_NIACIUracilpermeaseOS=NialliacirculansOX=1397GN=CEQ21_25850PE=3SV=1	REV__tr|A0A553SP76|A0A553SP76_NIACIUracilpermeaseOS=NialliacirculansOX=1397GN=CEQ21_25850PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.2861633300781	2	471.286943	940.559333	1.6624	0.00078349	-4.482	-0.0021123	-2.8195	-0.0013288	471.2846913754622	36.696	1.0457	33.804	33.546	34.591	-2.8925					44	20	3	0	0	0	0.62668	1	1307	1307		38.806	8.3025	1	249520	+		29962	30506	24600	24626	33202	33202					0.08667528591365681
LGSSVKLRHSN	11	Unmodified	_LGSSVKLRHSN_					0	0	0			REV__ENST00000198767.10_1_16:15154396-15154894:-|nuORF	REV__ENST00000198767.10_1_16:15154396-15154894:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	599.3637084960938	2	599.338561	1196.66257	-0.4373	-0.00026209	2.9243	0.0017527	2.487	0.0014906	599.3398629804369	127.41	1.1784	125.97	125.74	126.92	-1.4357					47	22	3	0	0	0	0.025767	1	12137	12137		37.508	21.035	1	75834	+		29963	23693	24601	24627	33203	33203					0.07210409031904419
LGSTVSSPMS	10	Unmodified	_LGSTVSSPMS_					0	0	0			REV__ZBTB16|p.H648Qfs*2|1|0.09|ENSG00000109906|chr11:114250477-114250477|C/-|frameshift_variant	REV__ZBTB16|p.H648Qfs*2|1|0.09|ENSG00000109906|chr11:114250477-114250477|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	482.7831726074219	2	483.23405	964.453547	0.039416	1.9047E-05	3.1804	0.0015369	3.2198	0.0015559	483.2345847662027	80.067	1.2169	77.727	77.206	78.423	-2.3399					42	23	3	0	0	0	0.026956	1	4437	4437		19.997	4.355	1	36296	+		29964	17956	24602	24628	33204	33204					-0.030101753163989997
LGTAGLRAVC	10	Unmodified	_LGTAGLRAVC_					0	0	0			REV__chr2:70964542-70964662|87|21.24|0.03|9.5|+|1|VAX2,None|1	REV__chr2:70964542-70964662|87|21.24|0.03|9.5|+|1|VAX2,None|1	MULTI-MSMS	OvCa99_classI_Rep5	1	480.7681579589844	2	480.768394	959.522236	-0.45227	-0.00021744	-0.0059492	-2.8602E-06	-0.45822	-0.0002203	480.7683580146085	33.752	0.62583	33.752	33.583	34.209	0					22	12	2	0	0	0	0.62299	1	1592	1592		39.253	5.0803	1	1201900	+		29965	16006	24603	24629	33205	33205					0.04085533773957195
LGTIQPMRIDT	11	Unmodified	_LGTIQPMRIDT_					0	0	0			REV__tr|A0A553SPS5|A0A553SPS5_NIACIResponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_26930PE=4SV=1	REV__tr|A0A553SPS5|A0A553SPS5_NIACIResponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_26930PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	622.8364868164062	2	622.837005	1243.65946	-0.93139	-0.0005801	-1.8345	-0.0011426	-2.7659	-0.0017227	622.8361585865998	32.098	1.3351	29.388	29.085	30.42	-2.7097					45	26	2	0	0	0	0.61983	1	1026	1026		42.864	0	1	83537	+		29966	30563	24604	24630	33206	33206					0.0473739786286842
LGTIQPMRIDT	11	Unmodified	_LGTIQPMRIDT_					0	0	0			REV__tr|A0A553SPS5|A0A553SPS5_NIACIResponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_26930PE=4SV=1	REV__tr|A0A553SPS5|A0A553SPS5_NIACIResponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_26930PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	622.837005	1243.65946	-0.93139	-0.0005801	-1.8345	-0.0011426	-2.7659	-0.0017227	622.8361585865998	32.098	1.3351	29.388	29.085	30.42	-2.7097	0	0	NaN	42.864	45	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83537	+		29967	30563	24604	24630							0.0473739786286842
LGTLCRIQ	8	Carbamidomethyl (C)	_LGTLC(Carbamidomethyl (C))RIQ_	LGTLC(1)RIQ		LGTLC(60)RIQ		0	1	0		ENSG00000109881|ENST00000328697|CCDC34	ENSG00000109881|ENST00000328697|CCDC34	ENSG00000109881|ENST00000328697|CCDC34	MULTI-MSMS	OvCa99_classI_Rep5	1	480.7679748535156	2	480.768394	959.522236	-0.45227	-0.00021744	-0.0059492	-2.8602E-06	-0.45822	-0.0002203	480.7683580146085	33.752	0.62583	33.752	33.583	34.209	0					22	12	2	0	0	0	0.61758	1	1567	1567		60.294	6.9425	1	1201900			29968	2740	24605	24631	33207	33207	26				0.04085533773957195
LGTLIPKSN	9	Unmodified	_LGTLIPKSN_					0	0	0		nc|ENSG00000105967|O14948-3|TFEC;nc|ENSG00000105967|O14948-4|TFEC;nc|ENSG00000105967|O14948-2|TFEC;ENSG00000105967|ENST00000265440|TFEC;nc|ENSG00000187098|O75030-11|MITF;nc|ENSG00000187098|O75030-10|MITF;nc|ENSG00000187098|O75030-9|MITF;nc|ENSG00000187098|O75030-12|MITF;nc|ENSG00000187098|O75030-4|MITF;nc|ENSG00000187098|O75030-3|MITF;nc|ENSG00000187098|O75030-8|MITF;nc|ENSG00000187098|O75030-7|MITF;nc|ENSG00000187098|O75030-6|MITF;nc|ENSG00000187098|O75030-2|MITF;nc|ENSG00000187098|O75030-5|MITF;ENSG00000187098|ENST00000352241|MITF	nc|ENSG00000105967|O14948-3|TFEC	nc|ENSG00000105967|O14948-3|TFEC	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.73553466796875	2	471.784567	941.554582	-0.32423	-0.00015296	0.98597	0.00046517	0.66175	0.0003122	471.78440953674436	38.702	0.48714	38.702	38.44	38.927	0					15	10	2	0	0	0	0.027462	1	2191	2191		32.812	15.447	1	38201			29969	2518	24606	24632	33208	33208					0.0814664444861819
LGTQSLPAK	9	Unmodified	_LGTQSLPAK_					0	0	0			REV__ENSG00000030066|ENST00000378460|NUP160	REV__ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	OvCa9_classI_Rep2	2	457.7691650390625	2	457.768917	913.523281	-0.48475	-0.0002219	0.62776	0.00028737	0.14301	6.5464E-05	457.7690527075125	33.854	1.0884	31.144	30.722	31.811	-2.7097					48	21	3	0	0	0	0.49652	1	1253	1253		42.864	3.6114	1	153510	+		29970	16584	24607	24633	33209	33209					0.06306071414530834
LGTSPKASLE	10	Unmodified	_LGTSPKASLE_					0	0	0		ENST00000395449.7_1_11:47187835-47198404:-|nuORF;ARFGAP2|p.K215Efs*8|1|0.14|ENSG00000149182|chr11:47172310-47172311|-/C|frameshift_variant;ENST00000527097.5_1_11:47193699-47198404:-|nuORF;nc|ENSG00000149182|Q8N6H7-2|ARFGAP2;ARFGAP2|p.L480Rfs*13|1|0.19|ENSG00000149182|chr11:47166373-47166374|CA/-|frameshift_variant;ENSG00000149182|ENST00000524782|ARFGAP2	ENST00000395449.7_1_11:47187835-47198404:-|nuORF	ENST00000395449.7_1_11:47187835-47198404:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.2896728515625	2	501.776939	1001.53933	-0.68023	-0.00034132	-0.061732	-3.0975E-05	-0.74196	-0.0003723	501.77665208786897	135.1	0.43979	134.88	134.74	135.18	-0.22697					13	8	2	0	0	0	0.027241	1	13381	13381		18.262	0	1	11999			29971	11289	24608	24634	33210	33210					0.03861732860775646
LGVAHLAR	8	Unmodified	_LGVAHLAR_					0	0	0		ENSG00000125898|ENST00000381941|FAM110A	ENSG00000125898|ENST00000381941|FAM110A	ENSG00000125898|ENST00000381941|FAM110A	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.2502746582031	2	418.758687	835.502821	0.17267	7.2307E-05	0.066303	2.7765E-05	0.23897	0.00010007	418.75860423935	47.519	0.64712	47.519	47.294	47.941	0					23	14	2	0	0	0	0.028476	1	3458	3458		19.36	5.5846	1	540870			29972	3751	24609	24635	33211	33211					0.078489455453564
LGVCFWGRVFI	11	Unmodified	_LGVCFWGRVFI_					0	0	0		chr1:86903448-86914298|208|10.21|0.42|4.61|-|2|SELENOF,None|1;ENST00000469566.5_1_1:87369072-87380010:-|nuORF	chr1:86903448-86914298|208|10.21|0.42|4.61|-|2|SELENOF,None|1	chr1:86903448-86914298|208|10.21|0.42|4.61|-|2|SELENOF,None|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	432.961669921875	3	432.902238	1295.68488	-0.72348	-0.0003132	-3.1817	-0.0013774	-3.9052	-0.0016906	432.90076790119167	60.187	0.93817	57.417	56.933	57.871	-2.7702					43	17	3	0	0	0	0.025864	1	4447	4447		20.03	1.4994	1	49732			29973	268	24610	24636	33212	33212					0.04886917175940653
LGVCFWGRVFI	11	Unmodified	_LGVCFWGRVFI_					0	0	0		chr1:86903448-86914298|208|10.21|0.42|4.61|-|2|SELENOF,None|1;ENST00000469566.5_1_1:87369072-87380010:-|nuORF	chr1:86903448-86914298|208|10.21|0.42|4.61|-|2|SELENOF,None|1	chr1:86903448-86914298|208|10.21|0.42|4.61|-|2|SELENOF,None|1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	432.902238	1295.68488	1.0257	0.00044402	-5.1456	-0.0022275	-4.1199	-0.0017835	432.89986883228863	60.918	1.1793	57.488	57.046	58.225	-3.43	0.035765	-0.001125	NaN	20.03	61	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159850			29974	268	24610	24636							0.04886917175940653
LGVDLKEV	8	Unmodified	_LGVDLKEV_					0	0	0		ENSG00000176774|ENST00000325250|MAGEB18	ENSG00000176774|ENST00000325250|MAGEB18	ENSG00000176774|ENST00000325250|MAGEB18	MULTI-SECPEP	OvCa9_classI_Rep2	2	437.27386474609375	2	436.758018	871.501483	-0.36473	-0.0001593	1.3594	0.00059372	0.99465	0.00043442	436.758380211295	68.619	1.2424	65.999	65.573	66.815	-2.6203					38	24	3	0	0	0	0.028476	1	5449	5449		47.916	0	1	64205			29975	7628	24611	24637	33213	33213					0.0605926666595451
LGVFPHSN	8	Unmodified	_LGVFPHSN_					0	0	0			REV__ENST00000312756.4_1_3:158369993-158373740:+|nuORF	REV__ENST00000312756.4_1_3:158369993-158373740:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	434.7310485839844	2	435.727052	869.439552	0.31097	0.0001355	2.8497	0.0012417	3.1607	0.0013772	435.7280687548062	54.31	0.58808	54.31	54.13	54.718	0					26	13	3	0	0	0	0.028476	1	4360	4360		12.959	0.75233	1	823360	+		29976	21409	24612	24638	33214	33214					-0.0003903996253029618
LGVKVGYKP	9	Unmodified	_LGVKVGYKP_					0	0	0			REV__ENSG00000122406|ENST00000370321|RPL5	REV__ENSG00000122406|ENST00000370321|RPL5	MULTI-MSMS	OvCa9_classI_Rep3	3	480.7967834472656	2	480.797478	959.580402	-0.37436	-0.00017999	0.20674	9.9399E-05	-0.16763	-8.0595E-05	480.7973622689828	116.04	2.9694	115	114.65	117.62	-1.0414					124	59	3	0	0	0	0.42057	1	8634	8634		50.025	0	1	286570	+		29977	18593	24613	24639	33215	33215					0.0989953869089959
LGVLGASLSH	10	Unmodified	_LGVLGASLSH_					0	0	0			REV__nc|ENSG00000103222|P33527-8|ABCC1	REV__nc|ENSG00000103222|P33527-8|ABCC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.8026123046875	2	477.274367	952.53418	1.1178	0.00053352	-2.3341	-0.001114	-1.2163	-0.00058049	477.2728479528823	86.691	1.7907	84.064	83.713	85.503	-2.6269					76	35	5	0	0	0	0.026665	1	7372	7372		51.335	7.2187	1	286500	+		29978	17604	24614	24640	33216	33216					0.056014737887949195
LGVLGASLSH	10	Unmodified	_LGVLGASLSH_					0	0	0			REV__nc|ENSG00000103222|P33527-8|ABCC1	REV__nc|ENSG00000103222|P33527-8|ABCC1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	477.274367	952.53418	-1.458	-0.00069588	0.546	0.00026059	-0.91203	-0.00043529	477.274524822237	85.464	1.4625	83.974	83.653	85.115	-1.4906	-0.064004	0.00036764	NaN	42.396	59	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144520	+		29979	17604	24614	24640							0.056014737887949195
LGVPGQRSP	9	Unmodified	_LGVPGQRSP_					0	0	0		nc|ENSG00000173531|P26927|MST1;ENSG00000173531|ENST00000449682|MST1	nc|ENSG00000173531|P26927|MST1	nc|ENSG00000173531|P26927|MST1	MULTI-MSMS	OvCa9_classI_Rep2	2	455.7584533691406	2	455.758884	909.503215	-0.0063747	-2.9053E-06	-0.40682	-0.00018541	-0.41319	-0.00018832	455.75868139331794	51.389	1.4388	48.576	48.154	49.592	-2.8129					81	28	4	0	0	0	0.40667	2	3388	3382;3388		51.335	3.6781	1	868170			29980	7385	24615	24641	33217;33218	33218					0.04484320474557535
LGVSYLLSKTL	11	Unmodified	_LGVSYLLSKTL_					0	0	0		tr|A0A7D6VQZ7|A0A7D6VQZ7_9CLOTFerrousirontransportproteinBOS=ClostridiumintestinaleOX=36845GN=feoBPE=3SV=1	tr|A0A7D6VQZ7|A0A7D6VQZ7_9CLOTFerrousirontransportproteinBOS=ClostridiumintestinaleOX=36845GN=feoBPE=3SV=1	tr|A0A7D6VQZ7|A0A7D6VQZ7_9CLOTFerrousirontransportproteinBOS=ClostridiumintestinaleOX=36845GN=feoBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	597.3583374023438	2	597.360639	1192.70673	-5.052	-0.0030179	1.7912	0.00107	-3.2607	-0.0019478	597.3615454958483	157.14	0.96848	155.97	155.65	156.62	-1.1707					64	22	4	0	0	0	0.71498	1	13564	13564		24.519	7.1542	1	132000			29981	34883	24616	24642	33219	33219					0.11808000405517305
LGVTDSNN	8	Unmodified	_LGVTDSNN_					0	0	0			REV__tr|A0A553STK2|A0A553STK2_NIACIFour-carbonacidsugarkinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05065PE=3SV=1	REV__tr|A0A553STK2|A0A553STK2_NIACIFour-carbonacidsugarkinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05065PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	410.19580078125	2	410.195782	818.377011	0.84403	0.00034622	-0.38698	-0.00015874	0.45705	0.00018748	410.1954921412904	35.495	0.87108	35.495	35.293	36.164	0					40	18	4	0	0	0	0.67745	1	1787	1787		47.916	1.9636	1	834180	+		29982	30976	24617	24643	33220	33220					-0.03944230821377914
LGWGQIPVRPV	11	Unmodified	_LGWGQIPVRPV_					0	0	0			REV__nc|ENSG00000089356|Q14802-5|FXYD3	REV__nc|ENSG00000089356|Q14802-5|FXYD3	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3540649414062	2	611.358765	1220.70298	-2.3862	-0.0014588	-2.1755	-0.00133	-4.5616	-0.0027888	611.3572929291362	147.43	3.7918	146.48	144.56	148.35	-0.9512					254	75	5	0	0	0	0.72459	1	12375	12375		20.947	2.6848	1	250910	+		29983	28752	24618	24644	33221	33221					0.10145375422303005
LGWMARCAALC	11	Carbamidomethyl (C),Oxidation (M)	_LGWM(Oxidation (M))ARCAALC(Carbamidomethyl (C))_	LGWMARCAALC(1)	LGWM(1)ARCAALC	LGWMARC(-41)AALC(41)	LGWM(51)ARCAALC	0	1	1			REV__nc|ENSG00000181800|Q8N7Q2|CELF2-AS1	REV__nc|ENSG00000181800|Q8N7Q2|CELF2-AS1	MULTI-MSMS	OvCa99_classI_Rep5	1	634.2947998046875	2	634.290853	1266.56715	2.7794	0.0017629	2.0092	0.0012744	4.7886	0.0030374	634.2926214506156	100.58	1.2443	100.58	100.32	101.57	0					62	29	4	0	0	0	0.52685	1	11142	11142		51.335	6.9583	2	5397400	+		29984	29037	24619	24645	33222	33222	358	642			-0.05546726746661079
LGWPDAAGL	9	Unmodified	_LGWPDAAGL_					0	0	0			REV__ENST00000506763.5_1_4:2243363-2243819:-|nuORF	REV__ENST00000506763.5_1_4:2243363-2243819:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.2336120605469	2	450.23471	898.454868	-0.47401	-0.00021342	-4.0138	-0.0018072	-4.4878	-0.0020206	450.232831869799	43.973	2.6125	40.966	40.641	43.254	-3.0074					107	50	4	0	0	0	0.22913	1	2155	2155		71.378	2.5911	1	2585300	+		29985	26891	24620	24646	33223	33223					0.001578268346634104
LGYKIDHQV	9	Unmodified	_LGYKIDHQV_					0	0	0		ENSG00000115904|ENST00000402219|SOS1;nc|ENSG00000115904|Q07889-2|SOS1;SOS1|p.L1273Cfs*6|1|0.07|ENSG00000115904|chr2:38986009-38986009|G/-|frameshift_variant	ENSG00000115904|ENST00000402219|SOS1	ENSG00000115904|ENST00000402219|SOS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3304443359375	2	536.792924	1071.57129	-0.055925	-3.002E-05	0.29003	0.00015569	0.23411	0.00012567	536.7930507983527	69.274	0.41237	69.274	69.063	69.475	0					16	9	2	0	0	0	0.027461	1	6596	6596		32.812	4.9302	1	309500			29986	3136	24621	24647	33224	33224					0.038371453345462214
LGYMCTLCR	9	Unmodified	_LGYMCTLCR_					0	0	0		L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|212|1|anti-sense;L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|231|2|anti-sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.448906025747238|0.1317034148076854|3.46|417.0|211|2|anti-sense;L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|211|2|anti-sense;chr3:195070111-195087933|297|11.33|0.27|5.37|-|0|TE_info:L1PA2,L1PA2_dup1050,L1,LINE,donor,+,195087933,195093677|XXYLT1,None|2;chr3:189023348-189023750|247|10.3|0.01|9.43|+|1|TE_info:L1PA3,L1PA3_dup2320,L1,LINE,donor,-,189017230,189023348|None,TPRG1|2;L1PA3_dup1152|chr2:117623254-117629278:+|1.1606400945596698|0.0841542146032081|3.79|394.0|239|2|anti-sense;chr8:91197524-91200613|99|17.84|0.22|6.31|+|0|TE_info:L1PA3,L1PA3_dup5484,L1,LINE,donor,-,91191845,91197524|None,LRRC69|1;L1PA2_dup23|chr1:43114528-43120516:-|1.3533449411662286|0.3152228216366226|2.1|404.0|165|1|anti-sense	L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|212|1|anti-sense	L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|212|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2794189453125	2	530.24284	1058.47113	2.0219	0.0010721	-4.1289	-0.0021893	-2.1071	-0.0011173	530.2408006361615	91.942	0.21321	91.942	91.879	92.092	0					6	4	2	0	0	0	0.027426	1	9940	9940		63.306	0	1	134580			29987	482	24622	24648	33225	33225					-0.05576874586768099
LHAALYERKL	10	Unmodified	_LHAALYERKL_					0	0	0		ENSG00000119685|ENST00000298832|TTLL5;nc|ENSG00000119685|Q6EMB2-2|TTLL5;TTLL5-IFT43|6|fusion;TTLL5-IFT43|5|fusion;TTLL5-IFT43|4|fusion;TTLL5-IFT43|3|fusion;TTLL5-IFT43|2|fusion;TTLL5-IFT43|1|fusion;ENST00000555422.5_1_14:76198560-76243086:+|nuORF	ENSG00000119685|ENST00000298832|TTLL5	ENSG00000119685|ENST00000298832|TTLL5	MULTI-MSMS	OvCa9_classI_Rep4_	4	405.2388000488281	3	405.239907	1212.69789	0.69282	0.00028076	-4.3164	-0.0017492	-3.6236	-0.0014684	405.23816410818705	45.869	1.9179	42.797	42.405	44.323	-3.0717					124	36	5	0	0	0	0.60504	1	2355	2355		41.427	1.3684	1	2187400			29988	3382	24623	24649	33226	33226					0.10005071559703538
LHAAVLFFY	9	Unmodified	_LHAAVLFFY_					0	0	0			REV__ENST00000461436.1_1_3:152019768-152019942:+|nuORF	REV__ENST00000461436.1_1_3:152019768-152019942:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.3356323242188	2	540.797478	1079.5804	1.3579	0.00073437	1.176	0.000636	2.534	0.0013704	540.798314917918	130.88	0.62045	130.88	130.53	131.15	0					16	12	2	0	0	0	0.027462	1	15219	15219		39.021	2.5747	1	38197	+		29989	26096	24624	24650	33227	33227					0.04379538690909612
LHAEVQKQL	9	Unmodified	_LHAEVQKQL_					0	0	0		nc|ENSG00000143365|P51449-2|RORC;ENSG00000143365|ENST00000318247|RORC	nc|ENSG00000143365|P51449-2|RORC	nc|ENSG00000143365|P51449-2|RORC	MULTI-MSMS	OvCa99_classI_Rep5	1	533.3096923828125	2	533.306198	1064.59784	2.0632	0.0011003	0.15233	8.124E-05	2.2156	0.0011816	533.3060633731086	78.362	1.7013	78.362	77.924	79.625	0					72	41	3	0	0	0	0.31747	1	7921	7921		60.972	5.4677	1	2706900			29990	5040	24625	24651	33228	33228					0.06812834225888764
LHAGELVA	8	Unmodified	_LHAGELVA_					0	0	0		ENST00000547992.5_1_12:58138858-58140853:+|nuORF;ENST00000257910.7_1_12:58138858-58140023:+|nuORF	ENST00000547992.5_1_12:58138858-58140853:+|nuORF	ENST00000547992.5_1_12:58138858-58140853:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	405.2303161621094	2	405.229428	808.444303	3.1367	0.0012711	-0.41357	-0.00016759	2.7231	0.0011035	405.22911953355566	79.452	2.4118	79.452	79.16	81.572	0					133	58	3	0	0	0	0.31268	3	8234	8176;8204;8234		104.94	30.428	1	10443000			29991	9832	24626	24652	33229;33230;33231	33231					0.03241844180240605
LHALGKNC	8	Carbamidomethyl (C)	_LHALGKNC(Carbamidomethyl (C))_	LHALGKNC(1)		LHALGKNC(47)		0	1	0		ENSG00000151743|ENST00000281471|AMN1;nc|ENSG00000151743|Q8IY45-2|AMN1	ENSG00000151743|ENST00000281471|AMN1	ENSG00000151743|ENST00000281471|AMN1	MULTI-MSMS	OvCa99_classI_Rep5	1	456.73663330078125	2	456.739637	911.464721	-0.87756	-0.00040082	-4.3761	-0.0019987	-5.2537	-0.0023996	456.73748647740496	36.729	0.90613	36.729	36.532	37.438	0					30	19	2	0	0	0	0.68312	1	1955	1955		46.766	7.7449	1	1011500			29992	5580	24627	24653	33232	33232	53				0.0054469156839331845
LHAPTPAGQTL	11	Unmodified	_LHAPTPAGQTL_					0	0	0		ENST00000481860.6_1_11:119043673-119051967:+|nuORF;nc|ENSG00000160703|Q86UT6-2|NLRX1;ENSG00000160703|ENST00000409109|NLRX1	ENST00000481860.6_1_11:119043673-119051967:+|nuORF	ENST00000481860.6_1_11:119043673-119051967:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	553.3057250976562	2	553.303655	1104.59276	-0.23464	-0.00012983	3.1205	0.0017266	2.8859	0.0015968	553.3053016072399	43.205	0.68061	43.205	43.014	43.694	0					41	15	4	0	0	0	0.28332	1	2837	2837		69.628	0	1	1543500			29993	6083	24628	24654	33233	33233					0.04464530363270569
LHAQQNFVK	9	Unmodified	_LHAQQNFVK_					0	0	0			REV__nc|ENSG00000198538|P17035-2|ZNF28	REV__nc|ENSG00000198538|P17035-2|ZNF28	MULTI-MSMS	OvCa9_classI_Rep2	2	542.7970581054688	2	542.79854	1083.58253	-2.2011	-0.0011947	-0.1673	-9.0808E-05	-2.3684	-0.0012856	542.7983627511975	142.92	1.1361	142.69	142.21	143.35	-0.22697					52	22	3	0	0	0	0.59983	1	14332	14332		31.955	6.5047	1	87156	+		29994	23026	24629	24655	33234	33234					0.04407967428710435
LHATLGALVS	10	Unmodified	_LHATLGALVS_					0	0	0			REV__ENSG00000198547|ENST00000608990|C20orf203	REV__ENSG00000198547|ENST00000608990|C20orf203	MULTI-MSMS	OvCa99_classI_Rep5	1	491.29010009765625	2	491.290017	980.565481	1.5388	0.000756	0.89055	0.00043752	2.4294	0.0011935	491.2903082783632	79.445	2.5374	79.445	78.75	81.288	0					118	61	3	0	0	0	0.48198	1	8186	8186		56.721	4.4219	1	5599900	+		29995	23028	24630	24656	33235	33235					0.07442046822905013
LHCILDETAM	10	Unmodified	_LHCILDETAM_					0	0	0			REV__nc|ENSG00000168386|Q4L180-5|FILIP1L	REV__nc|ENSG00000168386|Q4L180-5|FILIP1L	MULTI-MSMS	OvCa99_classI_Rep5	1	573.2716064453125	2	573.270109	1144.52567	1.7426	0.000999	0.25958	0.00014881	2.0022	0.0011478	573.2701674967453	117.33	2.4287	117.33	116.95	119.38	0					127	51	5	0	0	0	0.49049	1	13423	13423		55.504	0.72789	1	2599700	+		29996	21369	24631	24657	33236	33236					-0.0408158423435907
LHCLGCGWTR	10	Unmodified	_LHCLGCGWTR_					0	0	0		ENST00000422481.5_1_3:14565792-14567385:-|nuORF	ENST00000422481.5_1_3:14565792-14567385:-|nuORF	ENST00000422481.5_1_3:14565792-14567385:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	573.2720336914062	2	573.270778	1144.527	1.7426	0.000999	-0.90689	-0.00051989	0.83574	0.00047911	573.2701674967453	117.33	2.4287	117.33	116.95	119.38	0					127	51	5	0	0	0	0.33376	1	13447	13447		76.774	2.7994	1	2599700			29997	11695	24632	24658	33237	33237					-0.039479053549257515
LHCLPPSKP	9	Unmodified	_LHCLPPSKP_					0	0	0		ENST00000361483.4_1_12:111798605-111799217:-|nuORF	ENST00000361483.4_1_12:111798605-111799217:-|nuORF	ENST00000361483.4_1_12:111798605-111799217:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	496.2721862792969	2	496.273312	990.532072	1.6106	0.0007993	-2.1699	-0.0010769	-0.55933	-0.00027758	496.27171153447927	81.836	1.1106	81.836	81.455	82.565	0					59	26	5	0	0	0	0.48324	1	8465	8465		44.117	1.7207	1	3515900			29998	10798	24633	24659	33238	33238					0.03642721779351632
LHCLSFEQI	9	Unmodified	_LHCLSFEQI_					0	0	0		ENSG00000162777|ENST00000357640|DENND2D;nc|ENSG00000162777|Q9H6A0-2|DENND2D	ENSG00000162777|ENST00000357640|DENND2D	ENSG00000162777|ENST00000357640|DENND2D	MULTI-MSMS	OvCa99_classI_Rep5	1	545.2766723632812	2	545.273509	1088.53247	1.5589	0.00085004	3.2636	0.0017796	4.8225	0.0026296	545.2753300190966	127.5	1.7876	127.5	127.05	128.84	0					75	38	2	0	0	0	0.12365	1	14735	14735		90.777	11.326	1	11278000			29999	6233	24634	24660	33239	33239					-0.008259032914565978
LHCPTRLEP	9	Unmodified	_LHCPTRLEP_					0	0	0			REV__ENST00000372092.3_1_10:86004898-86010349:+|nuORF	REV__ENST00000372092.3_1_10:86004898-86010349:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	533.2855224609375	2	533.279126	1064.5437	2.6113	0.0013925	3.4204	0.001824	6.0317	0.0032166	533.280919443483	107.96	0.42348	107.96	107.82	108.24	0					19	9	3	0	0	0	0.29717	1	12193	12193		63.306	5.495	1	668780	+		30000	24997	24635	24661	33240	33240					0.01400918802664819
LHCPTRLEP	9	Unmodified	_LHCPTRLEP_					0	0	0			REV__ENST00000372092.3_1_10:86004898-86010349:+|nuORF	REV__ENST00000372092.3_1_10:86004898-86010349:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	533.279126	1064.5437	-0.63652	-0.00033945	6.0201	0.0032104	5.3836	0.0028709	533.2814798492326	109.73	0.31676	108.13	108.02	108.33	-1.6011	0.087436	0.0025036	NaN	63.306	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6159.2	+		30001	24997	24635	24661							0.01400918802664819
LHCSILRAKGL	11	Unmodified	_LHCSILRAKGL_					0	0	0		ENST00000564233.5_1_16:30020315-30023028:-|nuORF;ENSG00000149927|ENST00000350119|DOC2A	ENST00000564233.5_1_16:30020315-30023028:-|nuORF	ENST00000564233.5_1_16:30020315-30023028:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	605.858154296875	2	605.858075	1209.7016	2.024	0.0012263	-3.3261	-0.0020151	-1.3021	-0.00078887	605.8559671641736	134.59	1.397	134.59	134.29	135.69	0					68	30	3	0	0	0	0.17265	1	15675	15675		83.647	6.8729	1	3282600			30002	5492	24636	24662	33241	33241					0.10513418061918856
LHCSILRAKGL	11	Unmodified	_LHCSILRAKGL_					0	0	0		ENST00000564233.5_1_16:30020315-30023028:-|nuORF;ENSG00000149927|ENST00000350119|DOC2A	ENST00000564233.5_1_16:30020315-30023028:-|nuORF	ENST00000564233.5_1_16:30020315-30023028:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	605.8556518554688	2	605.858075	1209.7016	-0.016179	-9.8024E-06	-3.8562	-0.0023363	-3.8724	-0.0023461	605.8556533984647	132.36	2.1681	132.13	131.83	134	-0.22697					108	43	5	0	0	0	0.60323	2	13055	13055;13067		44.377	2.9506	1	589450			30003	5492	24636	24662	33242;33243	33242					0.10513418061918856
LHCTLKNNI	9	Unmodified	_LHCTLKNNI_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-MSMS	OvCa9_classI_Rep2	2	528.2843627929688	2	528.286951	1054.55935	-1.7589	-0.00092921	-2.7148	-0.0014342	-4.4737	-0.0023634	528.2853995863809	141.02	1.0894	140.79	140.48	141.57	-0.22697					51	21	4	0	0	0	0.24951	1	14127	14127		68.787	10.005	1	215050	+		30004	21063	24637	24663	33244	33244					0.03425205319717861
LHDPCSLIT	9	Unmodified	_LHDPCSLIT_					0	0	0			REV__ENST00000541595.6_3_19:9435063-9466338:+|nuORF	REV__ENST00000541595.6_3_19:9435063-9466338:+|nuORF	MSMS	OvCa9_classI_Rep3	3	499.7532653808594	2	499.75241	997.490267	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.84	1	138.8	138.3	139.3	-1.0339								0	0	0	0.16997	1	11492	11492		51.335	14.176	1		+		30005	27373	24638	24664	33245	33245					-0.008578786998327814
LHDRFLSC	8	Unmodified	_LHDRFLSC_					0	0	0		ENST00000555474.5_1_14:67804796-67804970:-|nuORF	ENST00000555474.5_1_14:67804796-67804970:-|nuORF	ENST00000555474.5_1_14:67804796-67804970:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	495.7458190917969	2	495.744919	989.475285	1.725	0.00085517	-0.64579	-0.00032015	1.0792	0.00053502	495.7444483252606	118.4	1.0837	118.4	118.11	119.19	0					45	22	3	0	0	0	0.61758	1	13610	13610		60.294	0	1	636650			30006	13648	24639	24665	33246	33246					-0.01987325777179194
LHDTEDKIKQ	10	Unmodified	_LHDTEDKIKQ_					0	0	0		ENSG00000136960|ENST00000075322|ENPP2;nc|ENSG00000136960|Q13822-3|ENPP2;nc|ENSG00000136960|Q13822-2|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	MULTI-MSMS	OvCa99_classI_Rep5	1	613.8235473632812	2	613.822409	1225.63027	1.9793	0.001215	-1.8152	-0.0011142	0.16417	0.00010077	613.8211310976798	83.462	8.351	83.462	82.264	90.615	0					423	201	4	0	0	0	0.66798	1	9158	9158		36.447	18.185	1	13312000			30007	4544	24640	24666	33247	33247					0.026475768382169917
LHELYSFLE	9	Unmodified	_LHELYSFLE_					0	0	0		chr20:49135931-49143854|113|13.45|0.47|4.83|-|0|TE_info:Looper,Looper_dup505,PiggyBac,DNA,donor,-,49143854,49145139|STAU1,None|2	chr20:49135931-49143854|113|13.45|0.47|4.83|-|0|TE_info:Looper,Looper_dup505,PiggyBac,DNA,donor,-,49143854,49145139|STAU1,None|2	chr20:49135931-49143854|113|13.45|0.47|4.83|-|0|TE_info:Looper,Looper_dup505,PiggyBac,DNA,donor,-,49143854,49145139|STAU1,None|2	MULTI-MSMS	OvCa99_classI_Rep5	1	575.794189453125	2	575.792589	1149.57063	1.3757	0.00079213	-1.2306	-0.00070858	0.14511	8.3551E-05	575.7926516207641	127.25	6.2749	127.25	125.49	131.76	0					413	134	6	0	0	0	0.27546	1	15052	15052		65.803	4.8312	1	222820000			30008	456	24641	24667	33248	33248					0.0018230589487302495
LHEMLGLY	8	Oxidation (M)	_LHEM(Oxidation (M))LGLY_		LHEM(1)LGLY		LHEM(60)LGLY	0	0	1			REV__nc|ENSG00000174527|Q8N1T3-3|MYO1H	REV__nc|ENSG00000174527|Q8N1T3-3|MYO1H	MULTI-MSMS	OvCa99_classI_Rep5	1	496.2491760253906	2	496.249503	990.484453	1.4711	0.00073004	-3.1217	-0.0015492	-1.6506	-0.00081911	496.24784144412973	127.3	0.94511	127.3	127.05	128	0					55	20	3	0	0	0	0.61758	1	14755	14755		60.294	7.9948	1	863030	+		30009	21840	24642	24668	33249	33249		509			-0.011169772115067644
LHEPLPGST	9	Unmodified	_LHEPLPGST_					0	0	0			REV__ENST00000452919.1_1_3:238157-238912:-|nuORF	REV__ENST00000452919.1_1_3:238157-238912:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.2874755859375	2	475.750724	949.486896	0.35433	0.00016857	-2.9805	-0.001418	-2.6262	-0.0012494	475.7491593429983	22.074	0.90578	20.735	20.473	21.378	-1.3386					35	17	3	0	0	0	0.027462	1	268	268		3.1592	0	1	50958	+		30010	25987	24643	24669	33250	33250					0.010131945178272872
LHEPLSFKP	9	Unmodified	_LHEPLSFKP_					0	0	0			REV__nc|ENSG00000141441|Q9H706-2|GAREM1	REV__nc|ENSG00000141441|Q9H706-2|GAREM1	MULTI-SECPEP	OvCa9_classI_Rep3	3	534.7775268554688	2	534.297842	1066.58113	0.27534	0.00014711	-3.3545	-0.0017923	-3.0792	-0.0016452	534.2960640045704	74.742	1.4817	72.331	71.796	73.278	-2.4106					50	29	2	0	0	0	0.027448	1	3845	3845		44.117	0	1	67084	+		30011	19737	24644	24670	33251	33251					0.050503333399547046
LHEPLSKER	9	Unmodified	_LHEPLSKER_					0	0	0		ENST00000515876.5_1_4:941527-949679:+|nuORF;ENST00000452360.6_1_4:942397-950358:+|nuORF;nc|ENSG00000127419|Q9BSA9-2|TMEM175;ENSG00000127419|ENST00000264771|TMEM175	ENST00000515876.5_1_4:941527-949679:+|nuORF	ENST00000515876.5_1_4:941527-949679:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.829345703125	2	554.809105	1107.60366	-0.21366	-0.00011854	0.64666	0.00035877	0.433	0.00024023	555.310824306156	60.061	0.39624	60.061	59.918	60.314	0					13	9	2	0	0	0	0.027462	1	5225	5225		29.15	0	1	261770			30012	3831	24645	24671	33252	33252					0.0541593273756007
LHEQAVDAP	9	Unmodified	_LHEQAVDAP_					0	0	0			REV__ENSG00000074047|ENST00000361492|GLI2	REV__ENSG00000074047|ENST00000361492|GLI2	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.2464599609375	2	490.245806	978.47706	-0.21003	-0.00010296	-1.5886	-0.00077879	-1.7986	-0.00088175	490.2450385240117	63.057	3.0011	59.582	59.044	62.045	-3.475					145	61	4	0	0	0	0.51865	1	4447	4447		40.778	2.9666	1	4610600	+		30013	16945	24646	24672	33253	33253					-0.013039934875791914
LHERFLAA	8	Unmodified	_LHERFLAA_					0	0	0			REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3	REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3	MSMS	OvCa9_classI_Rep4_	4	478.7700500488281	2	478.769252	955.52395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.443	1	42.405	41.905	42.905	-3.0385								0	0	0	0.30129	1	2321	2321		40.573	0	1		+		30014	20877	24647	24673	33254	33254					0.0444091085423679
LHFGLGWYP	9	Unmodified	_LHFGLGWYP_					0	0	0			REV__ENSG00000171298|ENST00000302262|GAA	REV__ENSG00000171298|ENST00000302262|GAA	MULTI-SECPEP	OvCa9_classI_Rep3	3	544.34716796875	2	545.279452	1088.54435	0.043787	2.3876E-05	-4.1718	-0.0022748	-4.128	-0.0022509	545.2771412203665	131.09	0.53467	129.97	129.61	130.15	-1.1249					13	10	2	0	0	0	0.027462	1	10386	10386		29.842	7.8817	1	12412	+		30015	21607	24648	24674	33255	33255					0.003620815140493505
LHFKWNQV	8	Unmodified	_LHFKWNQV_					0	0	0			REV__tr|A0A553SMH8|A0A553SMH8_NIACIAlpha-glucosidase/alpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_22510PE=3SV=1	REV__tr|A0A553SMH8|A0A553SMH8_NIACIAlpha-glucosidase/alpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_22510PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.8555908203125	2	536.290351	1070.56615	-2.6746	-0.0014344	-1.6832	-0.00090269	-4.3579	-0.0023371	536.2890573807026	104	0.72304	104	103.77	104.49	0					23	16	2	0	0	0	0.028476	1	11629	11629		35.201	2.3883	1	345480	+		30016	30331	24649	24675	33256	33256					0.03368886262592241
LHFPGKERP	9	Unmodified	_LHFPGKERP_					0	0	0		tr|A0A553SLH4|A0A553SLH4_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_20675PE=4SV=1	tr|A0A553SLH4|A0A553SLH4_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_20675PE=4SV=1	tr|A0A553SLH4|A0A553SLH4_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_20675PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.8330688476562	2	540.801083	1079.58761	2.549	0.0013785	-0.82063	-0.0004438	1.7283	0.00093469	540.8006924314494	94.493	1.1076	94.493	94.136	95.244	0					59	25	4	0	0	0	0.027462	1	10358	10358		42.474	0	1	802420			30017	33723	24650	24676	33257	33257					0.05100271291325953
LHFRILPT	8	Unmodified	_LHFRILPT_					0	0	0		ENSG00000171903|ENST00000402119|CYP4F11	ENSG00000171903|ENST00000402119|CYP4F11	ENSG00000171903|ENST00000402119|CYP4F11	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.7611389160156	2	498.803094	995.591636	-0.33226	-0.00016573	-3.6987	-0.0018449	-4.0309	-0.0020106	498.8009986386015	40.86	0.34808	40.86	40.711	41.059	0					12	7	2	0	0	0	0.028476	1	2513	2513		21.702	0	1	141300			30018	7247	24651	24677	33258	33258					0.09366360785031702
LHGALHLRLP	10	Unmodified	_LHGALHLRLP_					0	0	0			REV__ENST00000366756.3_1_6:170597857-170599216:-|nuORF	REV__ENST00000366756.3_1_6:170597857-170599216:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	563.8455200195312	2	563.845825	1125.6771	-0.41085	-0.00023166	-0.81155	-0.00045759	-1.2224	-0.00068924	563.8451243260417	115.68	0.69202	115.56	115.19	115.89	-0.11777					41	13	4	0	0	0	0.56767	1	11063	11063		45.952	3.0877	1	458140	+		30019	24884	24652	24678	33259	33259					0.11928525970688497
LHGDLAVLR	9	Unmodified	_LHGDLAVLR_					0	0	0			REV__ENSG00000179023|ENST00000400664|KLHDC7A	REV__ENSG00000179023|ENST00000400664|KLHDC7A	MULTI-MSMS	OvCa9_classI_Rep2	2	497.2960510253906	2	497.295633	992.576714	-0.63886	-0.0003177	0.081934	4.0745E-05	-0.55692	-0.00027695	497.29556624795856	76.294	1.7763	74.44	74.044	75.82	-1.854					92	33	4	0	0	0	0.27001	1	6331	6331		66.429	3.123	1	888620	+		30020	22093	24653	24679	33260	33260					0.08012868917057858
LHGFFNSW	8	Unmodified	_LHGFFNSW_					0	0	0			REV__ENST00000444273.6_1_6:56954967-57015704:+|nuORF	REV__ENST00000444273.6_1_6:56954967-57015704:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.26544189453125	2	504.240327	1006.4661	0.15691	7.9122E-05	-1.4479	-0.00073008	-1.291	-0.00065095	505.2415293469114	46.394	0.21381	46.394	46.242	46.456	0					9	4	3	0	0	0	0.028476	1	3260	3260		45.952	5.3793	1	61614	+		30021	18083	24654	24680	33261	33261					-0.036873510711984636
LHGKLILLI	9	Unmodified	_LHGKLILLI_					0	0	0		ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	MSMS	OvCa99_classI_Rep5	1	510.3525390625	2	510.35242	1018.69029	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.999	1	21.999	21.499	22.499	0								0	0	0	0.28349	1	165	165		4.3163	0	1				30022	6362	24655	24681	33262	33262					0.18168964030098778
LHGMPGVL	8	Unmodified	_LHGMPGVL_					0	0	0		ENST00000451864.6_1_1:156351301-156354326:+|nuORF;nc|ENSG00000132677|Q9H310-5|RHBG;nc|ENSG00000132677|Q9H310-4|RHBG;nc|ENSG00000132677|Q9H310-3|RHBG;nc|ENSG00000132677|Q9H310-2|RHBG;ENSG00000132677|ENST00000537040|RHBG	ENST00000451864.6_1_1:156351301-156354326:+|nuORF	ENST00000451864.6_1_1:156351301-156354326:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.2546691894531	2	412.228374	822.442194	0.65374	0.00026949	3.2772	0.0013509	3.9309	0.0016204	412.227892819807	56.158	0.56557	56.158	55.932	56.498	0					18	13	2	0	0	0	0.028476	1	4676	4676		16.705	11.618	1	193610			30023	4161	24656	24682	33263	33263					0.023870921707839443
LHGNMTRLEV	10	Unmodified	_LHGNMTRLEV_					0	0	0			REV__ENST00000478660.6_1_6:45481365-45631456:+|nuORF	REV__ENST00000478660.6_1_6:45481365-45631456:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	585.3501586914062	2	585.308415	1168.60228	-1.3675	-0.00080038	-0.99183	-0.00058053	-2.3593	-0.0013809	585.8118677354744	73.021	0.29601	70.534	70.332	70.628	-2.4873					11	5	3	0	0	0	0.027021	1	3511	3511		15.642	0	1	15839	+		30024	26419	24657	24683	33264	33264					0.024719753771250907
LHGQGKPQS	9	Unmodified	_LHGQGKPQS_					0	0	0			REV__ENSG00000214237|ENST00000465419|MINDY4B	REV__ENSG00000214237|ENST00000465419|MINDY4B	MULTI-MSMS	OvCa99_classI_Rep5	1	476.25323486328125	2	476.253966	950.493378	-0.33366	-0.00015891	-0.69585	-0.0003314	-1.0295	-0.00049031	476.2539054945066	38.729	2.0845	38.729	38.394	40.479	0					98	46	5	0	0	0	0.50149	1	2270	2270		42.396	1.8235	1	6094900	+		30025	23286	24658	24684	33265	33265					0.016151324691804803
LHGRLGAQ	8	Unmodified	_LHGRLGAQ_					0	0	0			REV__ENST00000446203.1_1_13:100060234-100060986:-|nuORF	REV__ENST00000446203.1_1_13:100060234-100060986:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	426.2450256347656	2	426.245944	850.477334	-0.93249	-0.00039747	1.1012	0.00046937	0.16868	7.1901E-05	426.2463036759244	138.33	1.7168	138.1	137.59	139.3	-0.22696					83	34	3	0	0	0	0.74595	1	13865	13865		14.664	0	1	161940	+		30026	25899	24659	24685	33266	33266					0.046114710229517186
LHGSANKLNN	10	Unmodified	_LHGSANKLNN_					0	0	0			REV__tr|A0A553SR31|A0A553SR31_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_00275PE=3SV=1	REV__tr|A0A553SR31|A0A553SR31_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_00275PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.2835083007812	2	534.283254	1066.55196	-1.2512	-0.00066849	2.5584	0.0013669	1.3072	0.0006984	534.2847652774342	143.71	1.0923	142.26	141.89	142.98	-1.4427					46	20	3	0	0	0	0.66721	1	14106	14106		34.173	9.9698	1	84175	+		30027	30687	24660	24686	33267	33267					0.021341890436588073
LHGSSLLI	8	Unmodified	_LHGSSLLI_					0	0	0		nc|ENSG00000101955|P78539-4|SRPX;nc|ENSG00000101955|P78539-3|SRPX;nc|ENSG00000101955|P78539-5|SRPX;nc|ENSG00000101955|P78539-2|SRPX;ENSG00000101955|ENST00000378533|SRPX	nc|ENSG00000101955|P78539-4|SRPX	nc|ENSG00000101955|P78539-4|SRPX	MULTI-MSMS	OvCa9_classI_Rep3	3	420.2522888183594	2	420.252903	838.491253	0.57551	0.00024186	-0.53085	-0.00022309	0.04466	1.8769E-05	420.25256475380445	109.42	2.3842	108.27	107.88	110.26	-1.1444					107	45	4	0	0	0	0.65582	1	7872	7872		52.299	0	1	608560			30028	2208	24661	24687	33268	33268					0.06554703731376321
LHGTITVLV	9	Unmodified	_LHGTITVLV_					0	0	0		ENSG00000087116|ENST00000251582|ADAMTS2	ENSG00000087116|ENST00000251582|ADAMTS2	ENSG00000087116|ENST00000251582|ADAMTS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.7947998046875	2	476.794935	951.575317	0.67009	0.0003195	-1.1183	-0.00053318	-0.44817	-0.00021368	476.79430466142145	111.9	1.8845	110.39	110.05	111.94	-1.5111					79	36	3	0	0	0	0.44294	1	10328	10328		47.916	0	1	847840			30029	1764	24662	24688	33269	33269					0.09759234828277386
LHGVPQGALLE	11	Unmodified	_LHGVPQGALLE_					0	0	0		ENSG00000175189|ENST00000309668|INHBC	ENSG00000175189|ENST00000309668|INHBC	ENSG00000175189|ENST00000309668|INHBC	MULTI-MSMS	OvCa9_classI_Rep3	3	567.320556640625	2	567.319306	1132.62406	-1.2368	-0.00070167	1.2078	0.00068523	-0.028977	-1.6439E-05	567.3201786014721	85.424	2.0958	83.204	82.744	84.84	-2.2204					134	41	5	0	0	0	0.068793	1	5045	5045		104.06	13.28	1	1900400			30030	7523	24663	24689	33270	33270					0.06305103397380662
LHGWVEVGEA	10	Unmodified	_LHGWVEVGEA_					0	0	0			REV__ENST00000337894.8_1_1:203096848-203097443:+|nuORF	REV__ENST00000337894.8_1_1:203096848-203097443:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.8396606445312	2	548.774731	1095.53491	-0.17006	-9.3324E-05	-1.6855	-0.00092497	-1.8556	-0.0010183	548.7720871256118	58.493	0.20767	58.493	58.322	58.53	0					6	4	2	0	0	0	0.026915	1	4975	4975		27.882	8.7787	1	97694	+		30031	24602	24664	24690	33271	33271					-0.009037315621299058
LHHFLKLKN	9	Unmodified	_LHHFLKLKN_					0	0	0		nc|ENSG00000105479|Q96M63-4|ODAD1;nc|ENSG00000105479|Q96M63-5|ODAD1;ENST00000474199.5_1_19:48800699-48823634:-|nuORF;nc|ENSG00000105479|Q96M63|ODAD1;ENSG00000105479|ENST00000674294|ODAD1	nc|ENSG00000105479|Q96M63-4|ODAD1	nc|ENSG00000105479|Q96M63-4|ODAD1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.3439331054688	2	575.3482	1148.68185	-4.8722	-0.0028032	0.22204	0.00012775	-4.6502	-0.0026755	575.3482857575835	154.87	1.1278	154.64	154.34	155.47	-0.22696					59	30	3	0	0	0	0.71696	1	15836	15836		12.207	0	1	84487			30032	2462	24665	24691	33272	33272					0.11345410113472099
LHHIYARTH	9	Unmodified	_LHHIYARTH_					0	0	0			REV__ENST00000495782.1_1_3:113801459-113804748:+|nuORF	REV__ENST00000495782.1_1_3:113801459-113804748:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.9602661132812	2	574.309606	1146.60466	-0.86324	-0.00049577	3.3827	0.0019427	2.5194	0.0014469	574.3114179844582	28.66	1.0966	28.66	28.439	29.536	0					45	21	3	0	0	0	0.027462	1	1021	1021		28.254	7.3073	1	418320	+		30033	20240	24666	24692	33273	33273					0.03722191897122684
LHHLQFLN	8	Unmodified	_LHHLQFLN_					0	0	0			REV__nc|ENSG00000116698|Q92540-4|SMG7	REV__nc|ENSG00000116698|Q92540-4|SMG7	MULTI-MSMS	OvCa9_classI_Rep2	2	511.2832946777344	2	511.282526	1020.5505	-0.80673	-0.00041247	-1.1092	-0.00056709	-1.9159	-0.00097956	511.282075128337	99.586	1.489	98.756	98.069	99.558	-0.83051					70	29	3	0	0	0	0.64377	1	9094	9094		54.765	0	1	393670	+		30034	28813	24667	24693	33274	33274					0.041045997455512406
LHHNCEPE	8	Carbamidomethyl (C)	_LHHNC(Carbamidomethyl (C))EPE_	LHHNC(1)EPE		LHHNC(49)EPE		0	1	0		nc|ENSG00000198881|Q8WXK4|ASB12;ENSG00000198881|ENST00000362002|ASB12	nc|ENSG00000198881|Q8WXK4|ASB12	nc|ENSG00000198881|Q8WXK4|ASB12	MULTI-MSMS	OvCa99_classI_Rep5	1	518.719482421875	2	518.219266	1034.42398	0.50939	0.00026397	-0.66053	-0.0003423	-0.15114	-7.8325E-05	518.2187988848444	157.76	0.97145	157.76	157.4	158.37	0					39	19	3	0	0	0	0.66992	1	18502	18502		49.442	8.8689	1	59232			30035	8897	24668	24694	33275	33275	90				-0.09185694541884004
LHHQEAGLHA	10	Unmodified	_LHHQEAGLHA_					0	0	0		ENSG00000215475|ENST00000400405|SIAH3	ENSG00000215475|ENST00000400405|SIAH3	ENSG00000215475|ENST00000400405|SIAH3	MULTI-MSMS	OvCa99_classI_Rep5	1	556.7847900390625	2	556.783422	1111.55229	2.7328	0.0015216	2.1507	0.0011975	4.8835	0.0027191	556.7845339815053	96.481	1.3535	96.481	96.126	97.479	0					78	31	4	0	0	0	0.20801	1	10597	10597		93.195	18.94	1	6635500			30036	9208	24669	24695	33276	33276					0.0009760876353084313
LHHRERSRRLT	11	Unmodified	_LHHRERSRRLT_					0	0	0			REV__ENST00000601593.5_3_19:58445233-58446731:-|nuORF	REV__ENST00000601593.5_3_19:58445233-58446731:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.74200439453125	3	487.61503	1459.82326	-0.31793	-0.00015503	2.2965	0.0011198	1.9785	0.00096476	487.61618626053087	46.706	1.2932	43.633	42.876	44.169	-3.0724					43	24	2	0	0	0	0.026113	1	2445	2445		18.531	0	1	48122	+		30037	28038	24670	24696	33277	33277					0.11174176468625774
LHHRFIYRHKK	11	Unmodified	_LHHRFIYRHKK_					0	0	0		ENST00000471102.1_1_10:46281927-46282167:+|nuORF	ENST00000471102.1_1_10:46281927-46282167:+|nuORF	ENST00000471102.1_1_10:46281927-46282167:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.8312377929688	3	512.300383	1533.87932	-0.51732	-0.00026502	0.0034214	1.7528E-06	-0.51389	-0.00026327	512.634581142578	49.203	1.1815	49.203	48.675	49.856	0					42	26	2	0	0	0	0.026488	1	3722	3722		1.4188	0	1	476600			30038	12375	24671	24697	33278	33278					0.13373429376088097
LHHSLTLE	8	Unmodified	_LHHSLTLE_					0	0	0		ENST00000602529.1_1_1:228462405-228463137:-|nuORF	ENST00000602529.1_1_1:228462405-228463137:-|nuORF	ENST00000602529.1_1_1:228462405-228463137:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.30126953125	2	475.258717	948.50288	-0.46397	-0.00022051	1.5421	0.00073292	1.0782	0.00051241	475.25938745409815	66.061	1.4596	62.576	61.743	63.202	-3.4854					40	29	2	0	0	0	0.028476	1	4843	4843		54.765	0	1	137890			30039	14239	24672	24698	33279	33279					0.02656900754709568
LHHVNQAVR	9	Unmodified	_LHHVNQAVR_					0	0	0		ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1;ENST00000595897.5_1_19:42402462-42407822:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3236083984375	2	537.301781	1072.58901	-1.2326	-0.00066228	0.25127	0.00013501	-0.98133	-0.00052727	537.301821804623	43.756	0.51726	43.756	43.478	43.995	0					32	11	4	0	0	0	0.027462	1	2905	2905		37.159	14.117	1	1924000			30040	1560	24673	24699	33280	33280					0.05561905380091048
LHICPIIL	8	Carbamidomethyl (C)	_LHIC(Carbamidomethyl (C))PIIL_	LHIC(1)PIIL		LHIC(44)PIIL		0	1	0			REV__nc|ENSG00000048028|Q96RU2-2|USP28	REV__nc|ENSG00000048028|Q96RU2-2|USP28	MULTI-MSMS	OvCa9_classI_Rep2	2	489.7957458496094	2	489.793881	977.573209	-0.22979	-0.00011255	4.0347	0.0019762	3.8049	0.0018636	489.795669737206	39.474	1.0919	36.764	36.459	37.551	-2.7097					56	21	4	0	0	0	0.69862	1	1920	1920		43.626	10.11	1	203380	+		30041	16665	24674	24700	33281	33281	189				0.0835248281883878
LHILWCQEL	9	Unmodified	_LHILWCQEL_					0	0	0			REV__ENST00000559345.5_1_15:79187167-79187245:+|nuORF	REV__ENST00000559345.5_1_15:79187167-79187245:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.293212890625	2	577.804977	1153.5954	1.1996	0.00069315	-4.4603	-0.0025772	-3.2607	-0.001884	578.3017630171801	149	0.72772	149	148.77	149.5	0					20	14	2	0	0	0	0.027462	1	17443	17443		26.796	0	1	40709	+		30042	27597	24675	24701	33282	33282					0.024746624965928277
LHIPQNIKF	9	Unmodified	_LHIPQNIKF_					0	0	0		NCOA6|p.A1848Wfs*4|1|0.09|ENSG00000198646|chr20:34740711-34740715|CTGCA/-|frameshift_variant;ENSG00000198646|ENST00000359003|NCOA6	NCOA6|p.A1848Wfs*4|1|0.09|ENSG00000198646|chr20:34740711-34740715|CTGCA/-|frameshift_variant	NCOA6|p.A1848Wfs*4|1|0.09|ENSG00000198646|chr20:34740711-34740715|CTGCA/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.7701416015625	2	555.326934	1108.63931	2.7382	0.0015206	-1.114	-0.00061861	1.6242	0.00090196	555.8277491183871	102.71	0.88822	102.71	102.29	103.18	0					33	20	2	0	0	0	0.027462	1	11429	11429		44.117	5.3107	1	188510			30043	8841	24676	24702	33283	33283					0.08934014985220529
LHIPRGVKGYV	11	Unmodified	_LHIPRGVKGYV_					0	0	0			REV__tr|A0A7D6VTN2|A0A7D6VTN2_9CLOTTranscriptionalregulatoryproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08615PE=4SV=1	REV__tr|A0A7D6VTN2|A0A7D6VTN2_9CLOTTranscriptionalregulatoryproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08615PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.869140625	2	619.87204	1237.72953	-1.8762	-0.001163	-2.3116	-0.0014329	-4.1878	-0.0025959	619.8704234308321	147.79	3.8764	146.35	144.25	148.12	-1.4351					189	77	4	0	0	0	0.72459	1	14353	14353		20.947	2.6225	1	269210	+		30044	31616	24677	24703	33284	33284					0.1201706431365892
LHIVFSILVV	10	Unmodified	_LHIVFSILVV_					0	0	0		ENSG00000255837|ENST00000538986|TAS2R20	ENSG00000255837|ENST00000538986|TAS2R20	ENSG00000255837|ENST00000538986|TAS2R20	MULTI-MSMS	OvCa9_classI_Rep4_	4	570.3580322265625	2	570.362985	1138.71142	-3.6448	-0.0020789	-3.6058	-0.0020566	-7.2506	-0.0041355	570.3607585251723	152.95	1.1827	151.52	151.24	152.42	-1.435					78	29	4	0	0	0	0.81289	1	15173	15173		17.365	0.89182	1	189880			30045	9462	24678	24704	33285	33285					0.1476092933894506
LHIVKVVAKK	10	Unmodified	_LHIVKVVAKK_					0	0	0		ENSG00000169504|ENST00000374379|CLIC4;ENST00000453177.2_1_9:22747885-22748107:+|nuORF	ENSG00000169504|ENST00000374379|CLIC4;ENST00000453177.2_1_9:22747885-22748107:+|nuORF	ENSG00000169504|ENST00000374379|CLIC4	MULTI-SECPEP	OvCa9_classI_Rep2	2	567.8477172851562	2	567.889701	1133.76485	0.23207	0.00013179	-4.2346	-0.0024048	-4.0025	-0.002273	567.8873821181837	71.655	0.31607	69.148	68.91	69.226	-2.5071					7	5	2	0	0	0	0.027334	1	5775	5775		17.365	0.89182	1	5731.9			30046	7014;12067	24679	24705	33286	33286					0.20331726841459385
LHIVQVKL	8	Unmodified	_LHIVQVKL_					0	0	0			REV__tr|A0A553SSF1|A0A553SSF1_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_02940PE=4SV=1	REV__tr|A0A553SSF1|A0A553SSF1_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_02940PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	475.3143615722656	2	475.313295	948.612037	3.0507	0.0014501	-0.16064	-7.6355E-05	2.8901	0.0013737	475.3128842517739	89.826	1.3808	89.826	89.476	90.857	0					63	33	3	0	0	0	0.65582	1	9622	9622		52.299	0.96372	1	2378200	+		30047	30832	24680	24706	33287	33287					0.1356753144484628
LHKEPVVSI	9	Unmodified	_LHKEPVVSI_					0	0	0			REV__nc|ENSG00000204930|A6H8Z2-3|FAM221B	REV__nc|ENSG00000204930|A6H8Z2-3|FAM221B	MULTI-MSMS	OvCa99_classI_Rep5	1	511.30804443359375	2	511.305667	1020.59678	2.4158	0.0012352	-0.85117	-0.00043521	1.5646	0.00079999	511.30494862735577	108.21	0.5547	108.21	107.99	108.54	0					29	12	3	0	0	0	0.48324	1	12221	12221		44.117	3.3386	1	699580	+		30048	23192	24681	24707	33288	33288					0.08730619856999056
LHKFRPPLC	9	Unmodified	_LHKFRPPLC_					0	0	0			REV__ENST00000315302.6_1_4:183064290-183064563:-|nuORF	REV__ENST00000315302.6_1_4:183064290-183064563:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.7929077148438	2	555.815679	1109.6168	3.287	0.0018269	-2.1773	-0.0012102	1.1097	0.00061678	556.3163090836176	88.047	0.28993	88.047	87.881	88.171	0					11	6	2	0	0	0	0.027462	1	9348	9348		25.45	0	1	110380	+		30049	24398	24682	24708	33289	33289					0.06638092315984068
LHKKKVSVE	9	Unmodified	_LHKKKVSVE_					0	0	0			REV__ENSG00000131951|ENST00000570145|LRRC9	REV__ENSG00000131951|ENST00000570145|LRRC9	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.2598876953125	2	534.332216	1066.64988	1.6924	0.00090433	-0.16191	-8.6516E-05	1.5305	0.00081781	534.3319560445912	106.88	0.60445	106.88	106.63	107.23	0					21	13	2	0	0	0	0.027462	1	12052	12052		23.042	0	1	424170	+		30050	19044	24683	24709	33290	33290					0.11921997639683468
LHKKPGRA	8	Unmodified	_LHKKPGRA_					0	0	0			REV__ENSG00000280969|ENST00000629237|RPS4Y2	REV__ENSG00000280969|ENST00000629237|RPS4Y2	MULTI-MSMS	OvCa99_classI_Rep5	1	453.78546142578125	2	453.785236	905.555919	0.13652	6.1951E-05	0.063923	2.9007E-05	0.20044	9.0959E-05	453.785066618423	22.458	0.3604	22.458	22.3	22.66	0					15	7	3	0	0	0	0.73626	1	212	212		33.516	8.0654	1	146900	+		30051	23660	24684	24710	33291	33291					0.09936323328042818
LHKLFICLF	9	Unmodified	_LHKLFICLF_					0	0	0			REV__ENST00000505822.1_1_5:65370974-65372269:+|nuORF	REV__ENST00000505822.1_1_5:65370974-65372269:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3250732421875	2	567.33063	1132.64671	0.7623	0.00043247	-2.2483	-0.0012755	-1.486	-0.00084307	567.3291667889723	142.3	3.0938	140.84	139.71	142.81	-1.4627					144	59	3	0	0	0	0.65476	1	14030	14030		25.45	2.8705	1	54551	+		30052	26881	24685	24711	33292	33292					0.08569031261276905
LHKLLSYLK	9	Unmodified	_LHKLLSYLK_					0	0	0			REV__ENSG00000178691|ENST00000322652|SUZ12	REV__ENSG00000178691|ENST00000322652|SUZ12	MULTI-SECPEP	OvCa9_classI_Rep2	2	557.8031005859375	2	557.852784	1113.69102	1.3044	0.00072768	0.26926	0.00015021	1.5737	0.00087788	557.8533454137058	66.255	0.19882	63.559	63.467	63.666	-2.6958					5	3	2	0	0	0	0.02741	1	5136	5136		71.296	12.514	1	6216.3	+		30053	22071	24686	24712	33293	33293					0.13871758679124468
LHKLREGL	8	Unmodified	_LHKLREGL_					0	0	0			REV__ENSG00000160294|ENST00000291688|MCM3AP	REV__ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MSMS	OvCa99_classI_Rep5	1	483.2989501953125	2	483.298176	964.581799	0.89411	0.00043212	0.2335	0.00011285	1.1276	0.00054497	483.2981379303427	74.499	1.195	74.499	74.135	75.33	0					59	29	4	0	0	0	0.57878	1	7364	7364		68.485	0	1	4906200	+		30054	20653	24687	24713	33294	33294					0.09809172779660003
LHKMLSFGFS	10	Unmodified	_LHKMLSFGFS_					0	0	0		ENSG00000159256|ENST00000400485|MORC3;ENST00000492336.5_1_21:37692562-37711220:+|nuORF	ENSG00000159256|ENST00000400485|MORC3	ENSG00000159256|ENST00000400485|MORC3	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8028564453125	2	583.804977	1165.5954	0.9784	0.0005712	-4.3928	-0.0025645	-3.4144	-0.0019933	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.66721	1	1417	1417		34.173	1.3601	1	155970			30055	6001	24688	24714	33295	33295					0.01922662496576777
LHKRLYAQR	9	Unmodified	_LHKRLYAQR_					0	0	0			REV__ENSG00000173404|ENST00000310227|INSM1	REV__ENSG00000173404|ENST00000310227|INSM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.8301391601562	2	592.854181	1183.69381	-0.9369	-0.00055545	0.041304	2.4487E-05	-0.8956	-0.00053096	592.8537910080122	36.76	0.22273	36.76	36.662	36.885	0					7	4	2	0	0	0	0.027462	1	1976	1976		18.324	0	1	38038	+		30056	21770	24689	24715	33296	33296					0.10931026856633252
LHKRPKLDSE	10	Unmodified	_LHKRPKLDSE_					0	0	0		ENSG00000153714|ENST00000319264|LURAP1L	ENSG00000153714|ENST00000319264|LURAP1L	ENSG00000153714|ENST00000319264|LURAP1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.220458984375	3	408.234933	1221.68297	0.67597	0.00027595	-0.91018	-0.00037157	-0.23421	-9.5613E-05	408.56920308399077	51.742	0.16137	51.742	51.627	51.788	0					5	3	2	0	0	0	0.026968	1	4014	4014		16.717	0	1	35778			30057	5689	24690	24716	33297	33297					0.08099579691725012
LHLAVLCGPRV	11	Unmodified	_LHLAVLCGPRV_					0	0	0		ENST00000505061.5_1_15:42105116-42107966:+|nuORF	ENST00000505061.5_1_15:42105116-42107966:+|nuORF	ENST00000505061.5_1_15:42105116-42107966:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3424072265625	2	589.347343	1176.68013	-3.0463	-0.0017953	-4.3757	-0.0025788	-7.422	-0.0043741	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.72466	1	15071	15071		19.997	2.6318	1	272220			30058	12886	24691	24717	33298	33298					0.0988603303317177
LHLCGPSYLI	10	Unmodified	_LHLCGPSYLI_					0	0	0		ENST00000369393.7_1_6:90408675-90408747:-|nuORF	ENST00000369393.7_1_6:90408675-90408747:-|nuORF	ENST00000369393.7_1_6:90408675-90408747:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	558.301513671875	2	558.299527	1114.5845	2.7795	0.0015518	-0.77027	-0.00043004	2.0092	0.0011218	558.2991109211848	108.13	2.0948	108.13	107.9	110	0					107	47	3	0	0	0	0.47435	1	12232	12232		57.811	7.7867	1	33414000			30059	10894	24692	24718	33299	33299					0.031792601223060046
LHLCGPSYLI	10	Unmodified	_LHLCGPSYLI_					0	0	0		ENST00000369393.7_1_6:90408675-90408747:-|nuORF	ENST00000369393.7_1_6:90408675-90408747:-|nuORF	ENST00000369393.7_1_6:90408675-90408747:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.29833984375	2	558.299527	1114.5845	1.3243	0.00073933	-1.5092	-0.0008426	-0.18497	-0.00010327	558.2984753972437	111.24	1.211	109.67	109.31	110.52	-1.5717					51	22	3	0	0	0	0.56767	1	10258	10258		45.952	1.8352	1	167610			30060	10894	24692	24718	33300	33300					0.031792601223060046
LHLCRGPGTLE	11	Unmodified	_LHLCRGPGTLE_					0	0	0		nc|ENSG00000146926|Q8WXI3-2|ASB10;nc|ENSG00000146926|Q8WXI3-3|ASB10;ENSG00000146926|ENST00000420175|ASB10	nc|ENSG00000146926|Q8WXI3-2|ASB10	nc|ENSG00000146926|Q8WXI3-2|ASB10	MULTI-MSMS	OvCa9_classI_Rep4_	4	598.316162109375	2	598.31624	1194.61793	-0.10474	-6.2667E-05	-0.48079	-0.00028766	-0.58553	-0.00035033	598.316223305457	109.07	8.6473	107.34	106.82	115.46	-1.7256					380	168	6	0	0	0	0.69081	1	10214	10214		32.812	1.2826	1	25436000			30061	5319	24693	24719	33301	33301					0.028402618941981927
LHLDSRKQL	9	Unmodified	_LHLDSRKQL_					0	0	0			REV__ENST00000504778.5_1_5:54552318-54579000:-|nuORF	REV__ENST00000504778.5_1_5:54552318-54579000:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	555.3290405273438	2	555.324922	1108.63529	2.5192	0.001399	3.1202	0.0017327	5.6393	0.0031317	555.3266204801115	94.98	4.6235	94.98	93.883	98.506	0					299	108	6	0	0	0	0.074342	6	10312	10282;10312;10336;10420;10451;10475		104.75	8.1414	1	31877000	+		30062	16293	24694	24720	33302;33303;33304;33305;33306;33307	33303					0.08531925491524817
LHLEERHI	8	Unmodified	_LHLEERHI_					0	0	0			REV__nc|ENSG00000253868|Q96M78|FER1L6-AS2	REV__nc|ENSG00000253868|Q96M78|FER1L6-AS2	MULTI-MSMS	OvCa99_classI_Rep5	1	523.7920532226562	2	523.790715	1045.56688	-0.20536	-0.00010756	0.46379	0.00024293	0.25844	0.00013537	523.7908331903445	62.926	0.63657	62.926	62.621	63.257	0					43	15	4	0	0	0	0.61758	1	5627	5627		60.294	1.512	1	5998400	+		30063	29172	24695	24721	33308	33308					0.04591680911653384
LHLEIDKEE	9	Unmodified	_LHLEIDKEE_					0	0	0			REV__nc|ENSG00000162664|Q5BKZ1-3|ZNF326	REV__nc|ENSG00000162664|Q5BKZ1-3|ZNF326	MULTI-MSMS	OvCa99_classI_Rep5	1	563.2957763671875	2	563.292953	1124.57135	3.1455	0.0017719	-0.46618	-0.0002626	2.6794	0.0015093	563.2913355385014	107.73	0.97099	107.73	107.4	108.37	0					44	22	3	0	0	0	0.31747	1	12146	12146		60.972	2.19	1	2232600	+		30064	20762	24696	24722	33309	33309					0.014051005439114306
LHLENRVTP	9	Unmodified	_LHLENRVTP_					0	0	0		L1P1_dup3131|chr21:8366255-8369545:+|1.1341358509163533|0.0129397411743262|6.45|422.0|32|2|sense	L1P1_dup3131|chr21:8366255-8369545:+|1.1341358509163533|0.0129397411743262|6.45|422.0|32|2|sense	L1P1_dup3131|chr21:8366255-8369545:+|1.1341358509163533|0.0129397411743262|6.45|422.0|32|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.7933959960938	2	539.803823	1077.59309	1.7294	0.00093351	2.2975	0.0012402	4.0268	0.0021737	539.8050112455185	127.84	0.69109	127.84	127.49	128.18	0					27	14	3	0	0	0	0.027462	1	14830	14830		17.365	7.0997	1	231350			30065	14636	24697	24723	33310	33310					0.0573995008314796
LHLEQLMLL	9	Oxidation (M)	_LHLEQLM(Oxidation (M))LL_		LHLEQLM(1)LL		LHLEQLM(71)LL	0	0	1			REV__nc|ENSG00000139263|Q6UXM1-2|LRIG3	REV__nc|ENSG00000139263|Q6UXM1-2|LRIG3	MULTI-MSMS	OvCa99_classI_Rep5	1	563.3201904296875	2	563.32046	1124.62637	2.0745	0.0011686	-2.9695	-0.0016728	-0.89499	-0.00050417	563.3185654524993	127.03	0.71037	127.03	126.61	127.32	0					43	15	4	0	0	0	0.22961	1	14659	14659		71.296	7.0884	1	554620	+		30066	28889	24698	24724	33311	33311		636			0.06903815810801461
LHLFFFVL	8	Unmodified	_LHLFFFVL_					0	0	0			REV__nc|ENSG00000120341|Q96JE7-3|SEC16B	REV__nc|ENSG00000120341|Q96JE7-3|SEC16B	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.7842407226562	2	518.304939	1034.59532	1.2209	0.00063279	0.39282	0.0002036	1.6137	0.00083639	518.3051121511859	112.24	0.40985	112.24	112.16	112.57	0					11	8	2	0	0	0	0.028476	1	12805	12805		16.705	5.1939	1	70110	+		30067	24494	24699	24725	33312	33312					0.07941030558913553
LHLFSTKGV	9	Unmodified	_LHLFSTKGV_					0	0	0			REV__ENSG00000255587|ENST00000612677|RAB44	REV__ENSG00000255587|ENST00000612677|RAB44	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.75848388671875	2	501.292559	1000.57057	2.5927	0.0012997	-0.56015	-0.0002808	2.0325	0.0010189	501.29210798783	89.315	0.84222	89.315	88.962	89.804	0					48	20	4	0	0	0	0.027462	1	9522	9522		30.504	11.144	1	2437500	+		30068	23531	24700	24726	33313	33313					0.07030350685533904
LHLFSWFFVL	10	Unmodified	_LHLFSWFFVL_					0	0	0			REV__ENST00000414307.5_1_2:170441399-170460586:+|nuORF	REV__ENST00000414307.5_1_2:170441399-170460586:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	436.26123046875	3	436.909498	1307.70667	1.5554	0.00067958	1.0176	0.00044459	2.573	0.0011242	436.90977464282884	65.603	0.86249	62.657	62.148	63.01	-2.9459					22	16	2	0	0	0	0.02717	1	2605	2605		30.318	7.7561	1	10228	+		30069	23935	24701	24727	33314	33314					0.06512045196154759
LHLGYLPNQL	10	Unmodified	_LHLGYLPNQL_					0	0	0		ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-3|DDX1	ENSG00000079785|ENST00000233084|DDX1	ENSG00000079785|ENST00000233084|DDX1	MULTI-MSMS	OvCa99_classI_Rep5	1	584.3301391601562	2	584.329673	1166.64479	1.5817	0.00092421	-1.1572	-0.0006762	0.42444	0.00024801	584.3290320063321	112.59	4.4882	112.59	111.56	116.05	0					226	99	6	0	0	0	0.062139	8	12826	12802;12826;12850;12874;12898;12922;12963;13092		124.59	42.208	1	109430000			30070	1620	24702	24728	33315;33316;33317;33318;33319;33320;33321;33322	33316					0.06813693777030494
LHLGYLPNQL	10	Unmodified	_LHLGYLPNQL_					0	0	0		ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-3|DDX1	ENSG00000079785|ENST00000233084|DDX1	ENSG00000079785|ENST00000233084|DDX1	MSMS	OvCa99_classI_Rep5	1	584.3294067382812	2	584.329673	1166.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.05	1	114.05	113.55	114.55	0								0	0	0	0.089197	1	13011	13011		85.359	21.152	1				30071	1620	24702	24728	33323	33323					0.06813693777030494
LHLGYLPNQL	10	Unmodified	_LHLGYLPNQL_					0	0	0		ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-3|DDX1	ENSG00000079785|ENST00000233084|DDX1	ENSG00000079785|ENST00000233084|DDX1	MSMS	OvCa99_classI_Rep5	1	584.3306274414062	2	584.329673	1166.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.25	1	114.25	113.75	114.75	0								0	0	0	0.081159	1	13037	13037		79.451	16.145	1				30072	1620	24702	24728	33324	33324					0.06813693777030494
LHLGYLPNQL	10	Unmodified	_LHLGYLPNQL_					0	0	0		ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-3|DDX1	ENSG00000079785|ENST00000233084|DDX1	ENSG00000079785|ENST00000233084|DDX1	MSMS	OvCa99_classI_Rep5	1	584.3330688476562	2	584.329673	1166.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.42	1	114.42	113.92	114.92	0								0	0	0	0.035857	1	13060	13060		115.46	30.543	1				30073	1620	24702	24728	33325	33325					0.06813693777030494
LHLGYLPNQL	10	Unmodified	_LHLGYLPNQL_					0	0	0		ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-3|DDX1	ENSG00000079785|ENST00000233084|DDX1	ENSG00000079785|ENST00000233084|DDX1	MULTI-MSMS	OvCa9_classI_Rep2	2	584.32958984375	2	584.329673	1166.64479	0.38348	0.00022408	-0.76093	-0.00044463	-0.37745	-0.00022055	584.329140448532	112.15	2.0737	112.03	111.78	113.86	-0.12174					108	41	5	0	0	0	0.20267	6	10612	10601;10612;10618;10625;10633;10651		94.006	31.899	1	555130			30074	1620	24702	24728	33326;33327;33328;33329;33330;33331	33327					0.06813693777030494
LHLGYLPNQL	10	Unmodified	_LHLGYLPNQL_					0	0	0		ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-3|DDX1	ENSG00000079785|ENST00000233084|DDX1	ENSG00000079785|ENST00000233084|DDX1	MULTI-MSMS	OvCa9_classI_Rep3	3	584.3308715820312	2	584.329673	1166.64479	-0.24335	-0.0001422	-0.38726	-0.00022629	-0.63061	-0.00036848	584.3293428556027	113.1	2.5611	112.02	111.76	114.32	-1.0753					117	50	3	0	0	0	0.092658	6	8304	8287;8292;8304;8309;8314;8329		115.46	39.467	1	646050			30075	1620	24702	24728	33332;33333;33334;33335;33336;33337	33334					0.06813693777030494
LHLGYLPNQL	10	Unmodified	_LHLGYLPNQL_					0	0	0		ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-3|DDX1	ENSG00000079785|ENST00000233084|DDX1	ENSG00000079785|ENST00000233084|DDX1	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3290405273438	2	584.329673	1166.64479	-0.20323	-0.00011875	-0.82135	-0.00047994	-1.0246	-0.00059869	584.3291428844931	113.42	3.0581	111.97	111.7	114.76	-1.4461					136	60	4	0	0	0	0.28791	2	10522	10522;10535		82.305	10.428	1	862170			30076	1620	24702	24728	33338;33339	33338					0.06813693777030494
LHLHEVLHTRK	11	Unmodified	_LHLHEVLHTRK_					0	0	0			REV__ZNF142|p.S904Tfs*73|1|0.05|ENSG00000115568|chr2:218643805-218643806|GA/-|frameshift_variant	REV__ZNF142|p.S904Tfs*73|1|0.05|ENSG00000115568|chr2:218643805-218643806|GA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	461.60400390625	3	461.60536	1381.79425	-6.3819	-0.0029459	3.5836	0.0016542	-2.7982	-0.0012917	461.60686943444614	158.73	0.87054	157.15	156.79	157.66	-1.5858					42	26	2	0	0	0	0.72472	1	15656	15656		19.263	0	1	44044	+		30077	18255	24703	24729	33340	33340					0.11862639119635787
LHLIAGLNML	10	Oxidation (M)	_LHLIAGLNM(Oxidation (M))L_		LHLIAGLNM(1)L		LHLIAGLNM(71)L	0	0	1			REV__ENSG00000179104|ENST00000321196|TMTC2	REV__ENSG00000179104|ENST00000321196|TMTC2	MULTI-MSMS	OvCa99_classI_Rep5	1	555.8203125	2	555.820627	1109.6267	2.4452	0.0013591	-2.5255	-0.0014037	-0.080274	-4.4618E-05	555.819301602474	97.084	0.38548	97.084	96.923	97.309	0					23	8	3	0	0	0	0.37918	1	10650	10650		71.296	7.9894	1	2526200	+		30078	22101	24704	24730	33341	33341		512			0.07627235530685539
LHLIAGLNML	10	Oxidation (M)	_LHLIAGLNM(Oxidation (M))L_					0	0	1			REV__ENSG00000179104|ENST00000321196|TMTC2	REV__ENSG00000179104|ENST00000321196|TMTC2	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	555.820627	1109.6267	2.4452	0.0013591	-2.5255	-0.0014037	-0.080274	-4.4618E-05	555.819301602474	97.084	0.38548	97.084	96.923	97.309	0	0	0	NaN	71.296	23	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2526200	+		30079	22101	24704	24730				512			0.07627235530685539
LHLIYIYTLI	10	Unmodified	_LHLIYIYTLI_					0	0	0			REV__tr|A0A553STB1|A0A553STB1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04720PE=4SV=1	REV__tr|A0A553STB1|A0A553STB1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04720PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	421.25537109375	3	421.256675	1260.7482	2.0308	0.00085549	-4.0158	-0.0016917	-1.985	-0.00083621	421.25488377471635	64.14	1.1115	61.147	60.786	61.898	-2.9933					53	21	3	0	0	0	0.58067	1	2450	2450		44.377	5.1244	1	105900	+		30080	30941	24705	24731	33342	33342					0.12825181164839705
LHLKALLNE	9	Unmodified	_LHLKALLNE_					0	0	0		ENST00000547997.5_1_12:95650374-95694446:+|nuORF;ENST00000552660.5_1_12:95650374-95694446:+|nuORF;ENSG00000028203|ENST00000436874|VEZT;ENST00000546398.5_1_12:95611596-95687545:+|nuORF;ENST00000549192.5_1_12:95650374-95690042:+|nuORF;nc|ENSG00000028203|Q9HBM0-2|VEZT	ENST00000547997.5_1_12:95650374-95694446:+|nuORF	ENST00000547997.5_1_12:95650374-95694446:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.8013916015625	2	525.818941	1049.62333	0.23234	0.00012217	-4.0926	-0.002152	-3.8603	-0.0020298	525.8167209653224	80.057	1.247	78.362	77.871	79.118	-1.6951					45	24	2	0	0	0	0.027462	1	6766	6766		37.159	0.13063	1	64439			30081	1059	24706	24732	33343	33343					0.10050308748327552
LHLKGPKV	8	Unmodified	_LHLKGPKV_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	OvCa99_classI_Rep5	1	446.7783508300781	2	446.292362	890.570172	0.29387	0.00013115	-0.22652	-0.00010109	0.067351	3.0058E-05	446.29214780084175	55.348	1.0711	55.348	55.107	56.178	0					43	25	2	0	0	0	0.028476	1	4625	4625		33.516	13.034	1	514660			30082	3687	24707	24733	33344	33344					0.12050975756324078
LHLKIFVHYL	10	Unmodified	_LHLKIFVHYL_					0	0	0			REV__ENST00000400109.2_1_13:19879246-19879522:-|nuORF	REV__ENST00000400109.2_1_13:19879246-19879522:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	641.882080078125	2	641.887158	1281.75976	-4.6434	-0.0029805	-2.4811	-0.0015926	-7.1245	-0.0045731	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.76627	1	15705	15705		23.042	7.4007	1	543390	+		30083	25398	24708	24734	33345	33345					0.13015422978855895
LHLKIFVHYL	10	Unmodified	_LHLKIFVHYL_					0	0	0			REV__ENST00000400109.2_1_13:19879246-19879522:-|nuORF	REV__ENST00000400109.2_1_13:19879246-19879522:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8828735351562	2	641.887158	1281.75976	-6.2551	-0.0040151	-0.93738	-0.00060169	-7.1925	-0.0046168	641.8862689798733	156.94	0.92667	155.77	155.29	156.22	-1.1707					38	17	3	0	0	0	0.85358	1	13513	13513		12.207	0.69583	1	33885	+		30084	25398	24708	24734	33346	33346					0.13015422978855895
LHLKNAITNTY	11	Unmodified	_LHLKNAITNTY_					0	0	0			REV__nc|ENSG00000144895|Q9BY44-4|EIF2A	REV__nc|ENSG00000144895|Q9BY44-4|EIF2A	MULTI-MSMS	OvCa9_classI_Rep3	3	644.3516845703125	2	644.356419	1286.69829	-6.1065	-0.0039348	-4.192	-0.0027011	-10.298	-0.0066359	644.3535517231257	156.22	1.1461	155.15	154.82	155.96	-1.073					70	25	4	0	0	0	0.72479	1	13419	13419		18.262	0.79408	1	162170	+		30085	28910	24709	24735	33347	33347					0.06640446488881935
LHLKVIVTE	9	Unmodified	_LHLKVIVTE_					0	0	0		tr|A0A553SIR4|A0A553SIR4_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_15365PE=3SV=1	tr|A0A553SIR4|A0A553SIR4_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_15365PE=3SV=1	tr|A0A553SIR4|A0A553SIR4_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_15365PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.7891845703125	2	526.329142	1050.64373	2.1594	0.0011365	0.078896	4.1525E-05	2.2382	0.0011781	526.3290221503626	84.659	0.74313	84.659	84.261	85.004	0					28	17	2	0	0	0	0.027462	1	8803	8803		39.253	0	1	178620			30086	33417	24710	24736	33348	33348					0.12043479408157509
LHLLGVTRK	9	Unmodified	_LHLLGVTRK_					0	0	0		ENST00000372429.7_1_9:132643135-132643285:+|nuORF	ENST00000372429.7_1_9:132643135-132643285:+|nuORF	ENST00000372429.7_1_9:132643135-132643285:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	518.83642578125	2	518.834926	1035.6553	-0.81706	-0.00042392	0.18343	9.5171E-05	-0.63363	-0.00032875	518.8350378795717	55.666	1.9973	55.666	55.44	57.438	0					101	47	5	0	0	0	0.16524	1	4558	4558		82.305	0	1	23922000			30087	10981	24711	24737	33349	33349					0.13889721222130902
LHLLIQSLF	9	Unmodified	_LHLLIQSLF_					0	0	0		nc|ENSG00000103044|O00219-2|HAS3;ENSG00000103044|ENST00000569188|HAS3	nc|ENSG00000103044|O00219-2|HAS3	nc|ENSG00000103044|O00219-2|HAS3	MULTI-SECPEP	OvCa9_classI_Rep3	3	543.3023681640625	2	542.331685	1082.64882	1.7246	0.00093528	-1.8731	-0.0010158	-0.14852	-8.0546E-05	542.330561861409	124	1.9754	122.97	121.36	123.34	-1.0377					74	37	3	0	0	0	0.027462	1	9476	9476		30.504	1.3541	1	114720			30088	2277	24712	24738	33350	33350					0.11079783270747612
LHLLQIVE	8	Unmodified	_LHLLQIVE_					0	0	0		ENST00000560334.5_1_15:79271198-79356973:-|nuORF;ENSG00000058335|ENST00000558480|RASGRF1;nc|ENSG00000058335|Q13972|RASGRF1	ENST00000560334.5_1_15:79271198-79356973:-|nuORF	ENST00000560334.5_1_15:79271198-79356973:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	482.7945556640625	2	482.794935	963.575317	-0.37797	-0.00018248	0.354	0.00017091	-0.023968	-1.1572E-05	482.7949494592736	43.29	0.93877	43.29	43.057	43.995	0					41	21	3	0	0	0	0.53531	1	2851	2851		73.975	0	1	855400			30089	1244	24713	24739	33351	33351					0.09207234828284072
LHLLYFPDD	9	Unmodified	_LHLLYFPDD_					0	0	0		ENSG00000087111|ENST00000308360|PIGS;nc|ENSG00000087111|Q96S52-2|PIGS;ENST00000487231.5_1_17:26881240-26882135:-|nuORF;ENST00000492429.2_1_17:26881240-26883317:-|nuORF	ENSG00000087111|ENST00000308360|PIGS	ENSG00000087111|ENST00000308360|PIGS	MULTI-MSMS	OvCa99_classI_Rep5	1	566.7890014648438	2	566.787307	1131.56006	1.8122	0.0010271	1.0152	0.00057543	2.8275	0.0016026	566.7877677672303	127.25	1.3202	127.25	127.05	128.37	0					81	28	4	0	0	0	0.36502	1	14722	14722		55.504	2.5675	1	2562000			30090	1763	24714	24740	33352	33352					-0.0004567675957787287
LHLNAGLHW	9	Unmodified	_LHLNAGLHW_					0	0	0			REV__ENST00000377990.6_2_2:65299248-65299482:+|nuORF	REV__ENST00000377990.6_2_2:65299248-65299482:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	530.7908935546875	2	530.787976	1059.5614	0.55258	0.0002933	0.9787	0.00051948	1.5313	0.00081279	530.7881585147398	160.88	0.70424	160.88	160.56	161.26	0					30	13	3	0	0	0	0.42057	1	18860	18860		50.025	0.81375	1	93115	+		30091	25132	24715	24741	33353	33353					0.03400002119860801
LHLNRIYEE	9	Unmodified	_LHLNRIYEE_					0	0	0			REV__LRRIQ1|p.E1195Kfs*10|1|0.44|ENSG00000133640|chr12:85124094-85124094|A/-|frameshift_variant	REV__LRRIQ1|p.E1195Kfs*10|1|0.44|ENSG00000133640|chr12:85124094-85124094|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	593.819580078125	2	593.814387	1185.61422	1.5039	0.00089301	0.30577	0.00018157	1.8096	0.0010746	593.8145077526559	79.139	1.8288	79.139	78.83	80.659	0					125	44	5	0	0	0	0.50149	1	8252	8252		42.396	1.8235	1	24225000	+		30092	19151	24716	24742	33354	33354					0.028839153919989258
LHLPSTGNPD	10	Unmodified	_LHLPSTGNPD_					0	0	0			REV__ENSG00000167971|ENST00000343516|CASKIN1	REV__ENSG00000167971|ENST00000343516|CASKIN1	MULTI-MSMS	OvCa9_classI_Rep2	2	525.7627563476562	2	525.764363	1049.51417	-1.0057	-0.00052877	-0.30927	-0.0001626	-1.315	-0.00069138	525.7640860878864	63.827	1.9331	61.082	60.638	62.571	-2.7444					79	36	4	0	0	0	0.6104	1	4836	4836		40.778	2.9666	1	975490	+		30093	21324	24717	24743	33355	33355					-0.008603219418091612
LHLPSVPITS	10	Unmodified	_LHLPSVPITS_					0	0	0			REV__ENSG00000139645|ENST00000267116|ANKRD52	REV__ENSG00000139645|ENST00000267116|ANKRD52	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.2925415039062	2	532.310949	1062.60735	-0.91344	-0.00048623	-2.1778	-0.0011593	-3.0912	-0.0016455	532.3096739088566	93.315	0.65373	91.353	91.178	91.832	-1.9617					17	12	2	0	0	0	0.026871	1	5989	5989		45.952	8.1404	1	44185	+		30094	19627	24718	24744	33356	33356					0.07854602511406483
LHLRKEKSQ	9	Unmodified	_LHLRKEKSQ_					0	0	0		ENST00000416599.5_1_13:52768206-52768563:-|nuORF	ENST00000416599.5_1_13:52768206-52768563:-|nuORF	ENST00000416599.5_1_13:52768206-52768563:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2940673828125	2	569.838197	1137.66184	-0.22479	-0.00012809	0.27313	0.00015564	0.048345	2.7549E-05	569.8381013244804	40.903	0.39328	40.903	40.711	41.104	0					17	8	3	0	0	0	0.027462	1	2536	2536		23.042	0	1	131670			30095	11608	24719	24745	33357	33357					0.09851614382841944
LHLRPALP	8	Unmodified	_LHLRPALP_					0	0	0		ENST00000204517.10_1_16:4322791-4323031:-|nuORF	ENST00000204517.10_1_16:4322791-4323031:-|nuORF	ENST00000204517.10_1_16:4322791-4323031:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	458.7879333496094	2	458.789987	915.565421	-2.0925	-0.00096003	-2.3749	-0.0010896	-4.4675	-0.0020496	458.7887619770069	147.55	1.9467	147.32	146.82	148.77	-0.22697					104	38	4	0	0	0	0.74816	1	14970	14970		15.636	0	1	613710			30096	9651	24720	24746	33358	33358					0.10426091613555855
LHLRPKGI	8	Unmodified	_LHLRPKGI_					0	0	0			REV__nc|ENSG00000164122|Q8WWX0-2|ASB5	REV__nc|ENSG00000164122|Q8WWX0-2|ASB5	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.301025390625	2	467.303262	932.59197	-1.8409	-0.00086028	-2.653	-0.0012397	-4.4939	-0.0021	467.30195282681905	148.29	1.8981	146.85	146.48	148.37	-1.435					87	38	4	0	0	0	0.74595	1	14590	14590		14.664	0.88877	1	733350	+		30097	20944	24721	24747	33359	33359					0.12297780504889033
LHLRRRRHHHR	11	Unmodified	_LHLRRRRHHHR_					0	0	0			REV__nc|ENSG00000146063|Q8WV44-3|TRIM41	REV__nc|ENSG00000146063|Q8WV44-3|TRIM41	MULTI-MSMS	OvCa9_classI_Rep3	3	525.30908203125	3	525.313908	1572.9199	-7.2846	-0.0038267	0.43833	0.00023026	-6.8463	-0.0035965	525.6483283454108	164	0.80278	162.6	161.94	162.74	-1.3925					51	19	3	0	0	0	0.7257	1	14330	14330		6.3209	4.7979	1	737400	+		30098	19994	24722	24748	33360	33360					0.15635208539106316
LHLRRRRHHHR	11	Unmodified	_LHLRRRRHHHR_					0	0	0			REV__nc|ENSG00000146063|Q8WV44-3|TRIM41	REV__nc|ENSG00000146063|Q8WV44-3|TRIM41	MULTI-MATCH	OvCa9_classI_Rep2	2		3	525.313908	1572.9199	-4.9965	-0.0026247	0.021197	1.1135E-05	-4.9753	-0.0026136	525.3140798345199	162.79	1.104	162.57	161.57	162.68	-0.22696	0.0083239	-0.00068471	NaN	6.3209	40	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	365230	+		30099	19994	24722	24748							0.15635208539106316
LHLSERPLL	9	Unmodified	_LHLSERPLL_					0	0	0			REV__ENST00000393371.6_1_5:179563414-179565077:-|nuORF	REV__ENST00000393371.6_1_5:179563414-179565077:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.7363891601562	2	539.324391	1076.63423	-0.94503	-0.00050968	-1.7783	-0.00095908	-2.7233	-0.0014688	539.3240939388666	62.459	0.68751	59.001	58.715	59.403	-3.4577					23	13	2	0	0	0	0.027456	1	4352	4352		38.806	10.924	1	43729	+		30100	24843	24723	24749	33361	33361					0.09897711122607689
LHLSSFLAAV	10	Unmodified	_LHLSSFLAAV_					0	0	0			REV__ENST00000455810.5_1_10:6624147-6625723:+|nuORF	REV__ENST00000455810.5_1_10:6624147-6625723:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.288818359375	2	529.305667	1056.59678	-1.7544	-0.00092859	-2.3578	-0.001248	-4.1121	-0.0021766	529.3043896292107	50.646	0.69252	47.852	47.43	48.123	-2.794					29	13	3	0	0	0	0.026802	1	3233	3233		51.335	14.176	1	71956	+		30101	26019	24724	24750	33362	33362					0.07074619856962272
LHLSSFLAAV	10	Unmodified	_LHLSSFLAAV_					0	0	0			REV__ENST00000455810.5_1_10:6624147-6625723:+|nuORF	REV__ENST00000455810.5_1_10:6624147-6625723:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	529.305667	1056.59678	-1.7753	-0.00093966	-2.5435	-0.0013463	-4.3187	-0.0022859	529.3041513488748	50.874	0.60821	47.7	47.464	48.072	-3.1734	-0.075876	-0.00012736	NaN	51.335	31	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	343720	+		30102	26019	24724	24750							0.07074619856962272
LHLVEDLRG	9	Unmodified	_LHLVEDLRG_					0	0	0		nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92-5|PPFIBP1;PPFIBP1-VIM|1|fusion;nc|ENSG00000110841|Q86W92|PPFIBP1	nc|ENSG00000110841|Q86W92-4|PPFIBP1;PPFIBP1-VIM|1|fusion;nc|ENSG00000110841|Q86W92|PPFIBP1	PPFIBP1-VIM|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.7627563476562	2	526.298373	1050.58219	-1.718	-0.00090416	4.0329	0.0021225	2.3149	0.0012183	526.3003682771156	63.284	1	60.54	60.161	61.161	-2.7444					34	18	2	0	0	0	0.027462	1	4836	4836		35.618	8.9254	1	73560			30103	15514;2795;14956	24725	24751	33363	33363					0.058925477088678235
LHLVLAGR	8	Unmodified	_LHLVLAGR_					0	0	0		ENST00000533871.6_2_11:133801972-133806022:-|nuORF	ENST00000533871.6_2_11:133801972-133806022:-|nuORF	ENST00000533871.6_2_11:133801972-133806022:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	439.68939208984375	2	439.782162	877.549771	1.005	0.00044198	-0.87034	-0.00038276	0.13467	5.9226E-05	439.78172679641165	58.602	0.60962	58.602	58.322	58.932	0					27	14	3	0	0	0	0.028476	1	4974	4974		8.2313	0	1	521960			30104	13347	24726	24752	33364	33364					0.10609805096510172
LHLWVMIVL	9	Unmodified	_LHLWVMIVL_					0	0	0		ENSG00000066455|ENST00000163416|GOLGA5	ENSG00000066455|ENST00000163416|GOLGA5	ENSG00000066455|ENST00000163416|GOLGA5	MULTI-MSMS	OvCa99_classI_Rep5	1	562.3385620117188	2	562.338455	1122.66236	2.718	0.0015284	-3.7357	-0.0021007	-1.0177	-0.0005723	562.3359723055806	95.244	1.0163	95.244	94.56	95.577	0					52	23	5	0	0	0	0.53728	1	10397	10397		39.021	0.21535	1	2323300			30105	1352	24727	24753	33365	33365					0.10593317778329947
LHNHGEVEA	9	Unmodified	_LHNHGEVEA_					0	0	0		tr|A0A7D7A574|A0A7D7A574_9CLOTPhospholipaseCOS=ClostridiumintestinaleOX=36845GN=HZF06_06105PE=4SV=1	tr|A0A7D7A574|A0A7D7A574_9CLOTPhospholipaseCOS=ClostridiumintestinaleOX=36845GN=HZF06_06105PE=4SV=1	tr|A0A7D7A574|A0A7D7A574_9CLOTPhospholipaseCOS=ClostridiumintestinaleOX=36845GN=HZF06_06105PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.2597961425781	2	503.241055	1004.46756	-0.18659	-9.3901E-05	-1.3895	-0.00069927	-1.5761	-0.00079317	503.2407648894249	69.347	0.32393	69.347	69.228	69.552	0					12	7	2	0	0	0	0.027462	1	6590	6590		30.504	0	1	137540			30106	36160	24728	24754	33366	33366					-0.03449761773094906
LHNQKEKLEL	10	Unmodified	_LHNQKEKLEL_					0	0	0		tr|A0A553SIC3|A0A553SIC3_NIACIMetallophosphoesteraseOS=NialliacirculansOX=1397GN=CEQ21_14590PE=4SV=1	tr|A0A553SIC3|A0A553SIC3_NIACIMetallophosphoesteraseOS=NialliacirculansOX=1397GN=CEQ21_14590PE=4SV=1	tr|A0A553SIC3|A0A553SIC3_NIACIMetallophosphoesteraseOS=NialliacirculansOX=1397GN=CEQ21_14590PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	417.90576171875	3	417.906705	1250.69829	0.39663	0.00016576	-2.3724	-0.00099144	-1.9758	-0.00082568	417.9056728604625	22.406	0.47233	22.406	22.228	22.7	0					24	10	4	0	0	0	0.59317	1	206	206		42.864	3.6114	1	221370			30107	33366	24729	24755	33367	33367					0.0829644648890735
LHPEEEALE	9	Unmodified	_LHPEEEALE_					0	0	0			REV__ENST00000524939.1_1_1:160252194-160254914:-|nuORF	REV__ENST00000524939.1_1_1:160252194-160254914:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.3109741210938	2	533.756204	1065.49785	-1.5551	-0.00083003	-2.0891	-0.0011151	-3.6442	-0.0019451	533.7549829042655	40.315	0.57637	37.361	37.213	37.789	-2.9541					13	10	2	0	0	0	0.027462	1	1717	1717		42.474	18.272	1	21317	+		30108	20772	24730	24756	33368	33368					-0.03227447898552782
LHPFPLIAL	9	Unmodified	_LHPFPLIAL_					0	0	0			REV__ENST00000254323.6_1_19:13942265-13942868:+|nuORF	REV__ENST00000254323.6_1_19:13942265-13942868:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.8130187988281	2	510.81567	1019.61679	-2.1881	-0.0011177	-2.0057	-0.0010245	-4.1938	-0.0021423	510.814522374635	148.32	0.8961	146.88	146.63	147.52	-1.435					43	17	3	0	0	0	0.61768	1	14604	14604		29.842	4.3914	1	141170	+		30109	23879	24731	24757	33369	33369					0.10776415587611154
LHPIFEAKQ	9	Unmodified	_LHPIFEAKQ_					0	0	0			REV__MAST1|p.G989Sfs*10|1|0.09|ENSG00000105613|chr19:12869256-12869257|-/TCAGGGGATGTGGCAGTAGAGAAGA|frameshift_variant	REV__MAST1|p.G989Sfs*10|1|0.09|ENSG00000105613|chr19:12869256-12869257|-/TCAGGGGATGTGGCAGTAGAGAAGA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	541.801025390625	2	541.803291	1081.59203	-0.54346	-0.00029445	-3.3192	-0.0017984	-3.8627	-0.0020928	541.8013427118868	24.908	0.75479	24.908	24.738	25.493	0					28	14	4	0	0	0	0.51865	1	498	498		40.778	2.9666	1	313100	+		30110	17740	24732	24758	33370	33370					0.054497357142281544
LHPILARADS	10	Unmodified	_LHPILARADS_					0	0	0		ENST00000467160.1_1_19:19758004-19758388:-|nuORF;ENST00000473243.5_1_19:19756247-19758388:-|nuORF	ENST00000467160.1_1_19:19758004-19758388:-|nuORF	ENST00000467160.1_1_19:19758004-19758388:-|nuORF	MSMS	OvCa99_classI_Rep5	1	546.8161010742188	2	546.811648	1091.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.12	1	113.12	112.62	113.62	0								0	0	0	0.11243	1	12890	12890		64.207	3.2353	1				30111	12306	24733	24759	33371	33371					0.066602366001689
LHPPPVPPVL	10	Unmodified	_LHPPPVPPVL_					0	0	0		ENST00000312210.9_1_1:150978916-150979051:-|nuORF	ENST00000312210.9_1_1:150978916-150979051:-|nuORF	ENST00000312210.9_1_1:150978916-150979051:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.7916870117188	2	533.326402	1064.63825	1.1028	0.00058817	-2.7555	-0.0014696	-1.6526	-0.0008814	533.3245974116392	155.75	1.0685	155.75	155.48	156.55	0					29	20	3	0	0	0	0.026839	1	18262	18262		26.796	0	1	27869			30112	10304	24734	24760	33372	33372					0.10851800616319451
LHPQVLEIF	9	Unmodified	_LHPQVLEIF_					0	0	0		ENSG00000254986|ENST00000531863|DPP3;nc|ENSG00000254986|Q9NY33-4|DPP3	ENSG00000254986|ENST00000531863|DPP3	ENSG00000254986|ENST00000531863|DPP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.7695922851562	2	548.313492	1094.61243	2.3703	0.0012996	-3.2431	-0.0017783	-0.87287	-0.00047861	548.3116331316139	75.889	0.79977	75.889	75.68	76.48	0					30	19	3	0	0	0	0.027462	1	7660	7660		21.96	0	1	1092300			30113	9450	24735	24761	33373	33373					0.0689090637404206
LHPRRPPIL	9	Unmodified	_LHPRRPPIL_					0	0	0			REV__ENST00000527763.5_1_11:829331-831706:+|nuORF	REV__ENST00000527763.5_1_11:829331-831706:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.2962036132812	2	549.848368	1097.68218	2.4492	0.0013467	-1.6285	-0.00089543	0.82069	0.00045126	549.8473204582417	107.92	0.72389	107.92	107.73	108.45	0					28	16	3	0	0	0	0.027462	1	12260	12260		23.042	0	1	1097500	+		30114	27159	24736	24762	33374	33374					0.1372482983331338
LHPRSICMI	9	Unmodified	_LHPRSICMI_					0	0	0		ENST00000483832.5_1_1:155580896-155581721:+|nuORF;ENST00000488901.5_1_1:155581342-155581721:+|nuORF;ENST00000494995.5_1_1:155580896-155583988:+|nuORF;ENST00000483734.5_1_1:155580745-155584061:+|nuORF;nc|ENSG00000125459|Q9BUK6-7|MSTO1;nc|ENSG00000125459|Q9BUK6-3|MSTO1;nc|ENSG00000125459|Q9BUK6-2|MSTO1;ENSG00000125459|ENST00000245564|MSTO1	ENST00000483832.5_1_1:155580896-155581721:+|nuORF	ENST00000483832.5_1_1:155580896-155581721:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	535.2880249023438	2	535.285897	1068.55724	1.8621	0.00099674	3.3536	0.0017951	5.2156	0.0027918	535.2875582005267	80.741	0.71875	80.741	80.443	81.162	0					47	16	4	0	0	0	0.091859	1	8310	8310		99.375	3.1845	1	6056100			30115	3710	24737	24763	33375	33375					0.025704533102953064
LHPRSICMI	9	Unmodified	_LHPRSICMI_					0	0	0		ENST00000483832.5_1_1:155580896-155581721:+|nuORF;ENST00000488901.5_1_1:155581342-155581721:+|nuORF;ENST00000494995.5_1_1:155580896-155583988:+|nuORF;ENST00000483734.5_1_1:155580745-155584061:+|nuORF;nc|ENSG00000125459|Q9BUK6-7|MSTO1;nc|ENSG00000125459|Q9BUK6-3|MSTO1;nc|ENSG00000125459|Q9BUK6-2|MSTO1;ENSG00000125459|ENST00000245564|MSTO1	ENST00000483832.5_1_1:155580896-155581721:+|nuORF	ENST00000483832.5_1_1:155580896-155581721:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	535.285897	1068.55724	-0.46783	-0.00025042	3.275	0.0017531	2.8072	0.0015026	535.2874359975307	82.432	0.9566	80.833	80.593	81.55	-1.5989	-0.010539	0.00017241	NaN	99.375	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211940			30116	3710	24737	24763							0.025704533102953064
LHPRSICMI	9	Unmodified	_LHPRSICMI_					0	0	0		ENST00000483832.5_1_1:155580896-155581721:+|nuORF;ENST00000488901.5_1_1:155581342-155581721:+|nuORF;ENST00000494995.5_1_1:155580896-155583988:+|nuORF;ENST00000483734.5_1_1:155580745-155584061:+|nuORF;nc|ENSG00000125459|Q9BUK6-7|MSTO1;nc|ENSG00000125459|Q9BUK6-3|MSTO1;nc|ENSG00000125459|Q9BUK6-2|MSTO1;ENSG00000125459|ENST00000245564|MSTO1	ENST00000483832.5_1_1:155580896-155581721:+|nuORF	ENST00000483832.5_1_1:155580896-155581721:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	535.285897	1068.55724	-0.11198	-5.9943E-05	2.5783	0.0013801	2.4664	0.0013202	535.287072107564	83.285	1.2212	80.989	80.579	81.8	-2.2963	0.14515	-0.00057344	NaN	99.375	55	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	264760			30117	3710	24737	24763							0.025704533102953064
LHPRSICMI	9	Unmodified	_LHPRSICMI_					0	0	0		ENST00000483832.5_1_1:155580896-155581721:+|nuORF;ENST00000488901.5_1_1:155581342-155581721:+|nuORF;ENST00000494995.5_1_1:155580896-155583988:+|nuORF;ENST00000483734.5_1_1:155580745-155584061:+|nuORF;nc|ENSG00000125459|Q9BUK6-7|MSTO1;nc|ENSG00000125459|Q9BUK6-3|MSTO1;nc|ENSG00000125459|Q9BUK6-2|MSTO1;ENSG00000125459|ENST00000245564|MSTO1	ENST00000483832.5_1_1:155580896-155581721:+|nuORF	ENST00000483832.5_1_1:155580896-155581721:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	535.285897	1068.55724	-0.90947	-0.00048683	3.6362	0.0019464	2.7267	0.0014596	535.2875708485977	83.474	0.92387	80.811	80.534	81.458	-2.6629	-0.032253	0.00055907	NaN	99.375	46	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240250			30118	3710	24737	24763							0.025704533102953064
LHPVAVELLGH	11	Unmodified	_LHPVAVELLGH_					0	0	0			REV__ENST00000493548.5_1_6:32122153-32123690:+|nuORF	REV__ENST00000493548.5_1_6:32122153-32123690:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	592.825439453125	2	592.842948	1183.67134	-1.11	-0.00065805	-1.6022	-0.00094983	-2.7122	-0.0016079	592.8414070504213	96.362	0.3004	94.533	94.271	94.571	-1.8286					8	5	2	0	0	0	0.025534	1	6334	6334		29.15	1.2673	1	19895	+		30119	26709	24738	24764	33376	33376					0.08685382668363673
LHPVVYPCT	9	Unmodified	_LHPVVYPCT_					0	0	0		ENSG00000020181|ENST00000412232|ADGRA2;nc|ENSG00000020181|Q96PE1-2|ADGRA2	ENSG00000020181|ENST00000412232|ADGRA2	ENSG00000020181|ENST00000412232|ADGRA2	MULTI-MSMS	OvCa9_classI_Rep2	2	514.7677001953125	2	514.76532	1027.51609	3.6733	0.0018909	2.9137	0.0014999	6.587	0.0033907	514.7667501531362	25.363	0.83264	22.654	22.479	23.311	-2.7097					28	18	2	0	0	0	0.6926	1	251	251		20.482	1.1219	1	64230			30120	1021	24739	24765	33377	33377					0.003430155424439363
LHQEGHMDD	9	Unmodified	_LHQEGHMDD_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1;nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-3|RYR3;RYR3|p.L1996Rfs*16|1|0.04|ENSG00000198838|chr15:33696344-33696344|T/-|frameshift_variant	nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000198838|Q15413-2|RYR3	nc|ENSG00000198838|Q15413-2|RYR3	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.29931640625	2	541.222005	1080.42946	-0.73131	-0.0003958	1.0191	0.00055158	0.28783	0.00015578	541.2224177824727	66.183	0.46854	66.183	65.984	66.452	0					19	11	2	0	0	0	0.027462	1	6095	6095		29.15	0	1	289940			30121	8886;8578	24740	24766	33378	33378					-0.10754015750057988
LHQQNVPL	8	Unmodified	_LHQQNVPL_					0	0	0			REV__ENSG00000204406|ENST00000642680|MBD5	REV__ENSG00000204406|ENST00000642680|MBD5	MULTI-MSMS	OvCa99_classI_Rep5	1	474.76800537109375	2	474.766709	947.518865	-0.055785	-2.6485E-05	3.3155	0.0015741	3.2598	0.0015476	474.76818715026326	35.638	0.82675	35.638	35.384	36.211	0					38	17	4	0	0	0	0.66704	1	1806	1806		50.025	0	1	1525700	+		30122	23153	24741	24767	33379	33379					0.04300606991614586
LHQQNVPL	8	Unmodified	_LHQQNVPL_					0	0	0			REV__ENSG00000204406|ENST00000642680|MBD5	REV__ENSG00000204406|ENST00000642680|MBD5	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	474.766709	947.518865	-0.055785	-2.6485E-05	3.3155	0.0015741	3.2598	0.0015476	474.76818715026326	35.638	0.82675	35.638	35.384	36.211	0	0	0	NaN	50.025	38	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1525700	+		30123	23153	24741	24767							0.04300606991614586
LHQSYIIK	8	Unmodified	_LHQSYIIK_					0	0	0			REV__tr|A0A553SUI7|A0A553SUI7_NIACICysteinehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_00235PE=3SV=1	REV__tr|A0A553SUI7|A0A553SUI7_NIACICysteinehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_00235PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	501.2889404296875	2	501.292559	1000.57057	-5.0178	-0.0025154	0.37912	0.00019005	-4.6387	-0.0023253	501.2925573745575	157.06	0.43016	156.83	156.57	157	-0.22696					16	9	2	0	0	0	0.75426	1	15978	15978		18.324	0.95945	1	12939	+		30124	31083	24742	24768	33380	33380					0.07030350685533904
LHQVVLAALA	10	Unmodified	_LHQVVLAALA_					0	0	0			REV__ENST00000423222.5_1_1:211556169-211556223:+|nuORF	REV__ENST00000423222.5_1_1:211556169-211556223:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	517.8192749023438	2	517.821484	1033.62842	-2.2306	-0.0011551	-1.8311	-0.0009482	-4.0617	-0.0021033	517.8203985316244	146.61	1.347	146.38	145.92	147.27	-0.22696					66	26	3	0	0	0	0.81992	1	14792	14792		16.473	0.83134	1	90796	+		30125	25628	24743	24769	33381	33381					0.1129461261095912
LHRALSARR	9	Unmodified	_LHRALSARR_					0	0	0			REV__nc|ENSG00000130182|Q96SZ4-2|ZSCAN10	REV__nc|ENSG00000130182|Q96SZ4-2|ZSCAN10	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3309936523438	2	540.330873	1078.64719	0.34656	0.00018726	-1.6282	-0.00087979	-1.2817	-0.00069253	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.68424	1	13795	13795		21.96	3.6355	1	342200	+		30126	18928	24744	24770	33382	33382					0.11101587025336812
LHRCHAPL	8	Unmodified	_LHRCHAPL_					0	0	0			REV__ENST00000393132.2_1_7:134343134-134343299:+|nuORF	REV__ENST00000393132.2_1_7:134343134-134343299:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	473.7563171386719	2	473.755621	945.49669	0.6622	0.00031372	-1.6088	-0.0007622	-0.94664	-0.00044848	473.7547352386777	160.85	0.75519	160.85	160.56	161.31	0					31	14	3	0	0	0	0.64377	1	18856	18856		54.765	4.7401	1	93627	+		30127	25275	24745	24771	33383	33383					0.021761040422006772
LHRCLNLCTSI	11	Unmodified	_LHRCLNLCTSI_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;nc|ENSG00000179532|Q96M86-5|DNHD1;nc|ENSG00000179532|Q96M86-4|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	OvCa9_classI_Rep2	2	424.88885498046875	3	424.889892	1271.64785	-0.9883	-0.00041992	1.2398	0.0005268	0.25154	0.00010688	424.8904354672349	33.271	1.2911	30.562	30.321	31.612	-2.7097					77	25	4	0	0	0	0.65267	2	1165	1165;1185		39.873	5.6275	1	615830			30128	7829	24746	24772	33384;33385	33384					0.02288877567889358
LHRCLNLCTSI	11	Unmodified	_LHRCLNLCTSI_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;nc|ENSG00000179532|Q96M86-5|DNHD1;nc|ENSG00000179532|Q96M86-4|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	424.89093017578125	3	424.889892	1271.64785	-0.11144	-4.7351E-05	0.02374	1.0087E-05	-0.087704	-3.7264E-05	424.89005057309436	20.59	2.4808	19.252	18.851	21.331	-1.3386					183	49	7	0	0	0	0.62561	1	102	102		42.338	9.5875	1	5179600			30129	7829	24746	24772	33386	33386					0.02288877567889358
LHRELVSW	8	Unmodified	_LHRELVSW_					0	0	0		ENST00000416720.1_9:42808985-42809460:+|nuORF	ENST00000416720.1_9:42808985-42809460:+|nuORF	ENST00000416720.1_9:42808985-42809460:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.8201904296875	2	520.287808	1038.56106	3.3429	0.0017393	1.333	0.00069356	4.676	0.0024328	520.2874292580666	133.04	0.54205	131.53	131.22	131.76	-1.5173					24	10	3	0	0	0	0.028476	1	12839	12839		38.806	0	1	22381			30130	11612	24747	24773	33387	33387					0.043325824000021385
LHREVRSTP	9	Unmodified	_LHREVRSTP_					0	0	0		nc|ENSG00000100568|Q9UEU0-2|VTI1B;ENST00000216456.6_1_14:68118104-68129806:-|nuORF;ENSG00000100568|ENST00000554659|VTI1B	nc|ENSG00000100568|Q9UEU0-2|VTI1B	nc|ENSG00000100568|Q9UEU0-2|VTI1B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.325439453125	2	547.806897	1093.59924	-0.94582	-0.00051813	3.5148	0.0019254	2.569	0.0014073	547.8083440734924	91.996	0.55977	89.453	89.262	89.822	-2.5425					17	10	2	0	0	0	0.027462	1	8008	8008		20.947	0	1	16336			30131	2085	24748	24774	33388	33388					0.05618468314673919
LHRFRLRA	8	Unmodified	_LHRFRLRA_					0	0	0			REV__ZSCAN22|p.F55L|1|0.67|ENSG00000182318|chr19:58334965-58334965|T/C|missense_variant	REV__ZSCAN22|p.F55L|1|0.67|ENSG00000182318|chr19:58334965-58334965|T/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.7793579101562	2	534.830509	1067.64647	0.44431	0.00023763	-2.0466	-0.0010946	-1.6023	-0.00085696	534.8289052335855	72.097	0.61523	72.097	71.835	72.45	0					13	7	2	0	0	0	0.028476	1	7036	7036		33.516	5.6333	1	290060	+		30132	32781	24749	24775	33389	33389					0.11534792376323821
LHRGPPGAEPH	11	Unmodified	_LHRGPPGAEPH_					0	0	0		ENSG00000183034|ENST00000331427|OTOP2	ENSG00000183034|ENST00000331427|OTOP2	ENSG00000183034|ENST00000331427|OTOP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.7821655273438	2	584.304521	1166.59449	-0.74821	-0.00043718	0.17132	0.0001001	-0.57689	-0.00033708	584.3041075751867	51.702	0.70875	51.702	51.461	52.17	0					26	16	3	0	0	0	0.025806	1	3998	3998		39.253	3.6345	1	341710			30133	8047	24750	24776	33390	33390					0.017855841718983356
LHRIIQKS	8	Unmodified	_LHRIIQKS_					0	0	0			REV__ENST00000375857.6_1_13:109445985-109707944:+|nuORF	REV__ENST00000375857.6_1_13:109445985-109707944:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.7688903808594	2	497.811451	993.608348	-0.70495	-0.00035093	0.22405	0.00011153	-0.48091	-0.0002394	497.8112982156706	36.185	0.50362	36.185	35.939	36.442	0					23	10	3	0	0	0	0.028476	1	1901	1901		12.207	0	1	294370	+		30134	16632	24751	24777	33391	33391					0.11128861671011236
LHRILQTSR	9	Unmodified	_LHRILQTSR_					0	0	0			REV__ENSG00000198131|ENST00000687789|ZNF544	REV__ENSG00000198131|ENST00000687789|ZNF544	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.8163452148438	2	562.338364	1122.66217	1.0388	0.00058418	0.92563	0.00052051	1.9645	0.0011047	562.3397320027495	72.3	0.60982	72.3	72	72.61	0					28	14	3	0	0	0	0.027462	1	7027	7027		42.396	0	1	793960	+		30135	22992	24752	24778	33392	33392					0.10575034102703285
LHRKESLLRS	10	Unmodified	_LHRKESLLRS_					0	0	0			REV__ENSG00000135355|ENST00000369352|GJA10	REV__ENSG00000135355|ENST00000369352|GJA10	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8695678710938	2	619.870028	1237.7255	-1.8762	-0.001163	0.9332	0.00057847	-0.94295	-0.00058451	619.8704234308321	147.79	3.8764	146.35	144.25	148.12	-1.4351					189	77	4	0	0	0	0.7759	1	14523	14523		21.96	0	1	269210	+		30136	19278	24753	24779	33393	33393					0.11614974819940471
LHRKFLLFTD	10	Unmodified	_LHRKFLLFTD_					0	0	0		nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1;DICER1|p.F816Ifs*18|1|0.04|ENSG00000100697|chr14:95108084-95108085|-/CCTTGAAGAT|frameshift_variant	nc|ENSG00000100697|Q9UPY3-2|DICER1	nc|ENSG00000100697|Q9UPY3-2|DICER1	MULTI-MSMS	OvCa9_classI_Rep4_	4	645.3753662109375	2	645.371872	1288.72919	0.14887	9.6079E-05	-3.5637	-0.0022999	-3.4149	-0.0022039	645.3693996208364	90.956	1.8331	88.381	88.007	89.84	-2.575					104	35	5	0	0	0	0.72319	1	7851	7851		27.882	1.1893	1	395330			30137	2098	24754	24780	33394	33394					0.09637644593794903
LHRKPKLGQEL	11	Unmodified	_LHRKPKLGQEL_					0	0	0		nc|ENSG00000133059|Q6XUX3-2|DSTYK;ENSG00000133059|ENST00000367162|DSTYK;nc|ENSG00000133059|Q6XUX3-4|DSTYK	nc|ENSG00000133059|Q6XUX3-2|DSTYK	nc|ENSG00000133059|Q6XUX3-2|DSTYK	MULTI-MSMS	OvCa9_classI_Rep4_	4	440.27032470703125	3	440.269978	1317.7881	-0.89571	-0.00039436	0.46906	0.00020651	-0.42666	-0.00018784	440.2700997794892	81.729	1.1139	79.046	78.718	79.832	-2.6829					63	22	4	0	0	0	0.69589	1	6725	6725		31.068	2.4914	1	277300			30138	4194	24755	24781	33395	33395					0.14192120888128557
LHRKPKLGQEL	11	Unmodified	_LHRKPKLGQEL_					0	0	0		nc|ENSG00000133059|Q6XUX3-2|DSTYK;ENSG00000133059|ENST00000367162|DSTYK;nc|ENSG00000133059|Q6XUX3-4|DSTYK	nc|ENSG00000133059|Q6XUX3-2|DSTYK	nc|ENSG00000133059|Q6XUX3-2|DSTYK	MULTI-MATCH	OvCa9_classI_Rep2	2		3	440.269978	1317.7881	1.5282	0.00067283	-1.7386	-0.00076546	-0.2104	-9.2632E-05	440.26911980319574	80.866	1.2122	79.171	78.868	80.08	-1.6951	-0.045593	-0.0018774	NaN	31.068	72	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	251370			30139	4194	24755	24781							0.14192120888128557
LHRKPKLGQEL	11	Unmodified	_LHRKPKLGQEL_					0	0	0		nc|ENSG00000133059|Q6XUX3-2|DSTYK;ENSG00000133059|ENST00000367162|DSTYK;nc|ENSG00000133059|Q6XUX3-4|DSTYK	nc|ENSG00000133059|Q6XUX3-2|DSTYK	nc|ENSG00000133059|Q6XUX3-2|DSTYK	MULTI-MATCH	OvCa9_classI_Rep3	3		3	440.269978	1317.7881	-0.32968	-0.00014515	0.23693	0.00010431	-0.092756	-4.0838E-05	440.2700011496199	81.755	1.2979	79.432	79.106	80.404	-2.3226	0.21589	0.00073195	NaN	31.068	70	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	390870			30140	4194	24755	24781							0.14192120888128557
LHRKRKKP	8	Unmodified	_LHRKRKKP_					0	0	0			REV__nc|ENSG00000177910|B4DYI2|SPATA31C2	REV__nc|ENSG00000177910|B4DYI2|SPATA31C2	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.7662353515625	2	531.853984	1061.69342	-0.41907	-0.00022288	0.1329	7.0686E-05	-0.28617	-0.0001522	531.8539023352249	38.732	0.48616	38.732	38.531	39.017	0					22	10	3	0	0	0	0.028476	1	2261	2261		4.3163	0	1	548440	+		30141	29024	24756	24782	33396	33396					0.16503651927450846
LHRLLRESQKA	11	Unmodified	_LHRLLRESQKA_					0	0	0		TRIM62|p.R192S|1|0.08|ENSG00000116525|chr1:33159875-33159875|G/T|missense_variant	TRIM62|p.R192S|1|0.08|ENSG00000116525|chr1:33159875-33159875|G/T|missense_variant	TRIM62|p.R192S|1|0.08|ENSG00000116525|chr1:33159875-33159875|G/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	450.9371337890625	3	450.936999	1349.78917	1.6146	0.00072808	-1.8052	-0.00081405	-0.19064	-8.5968E-05	450.9360997934693	63.19	1.2421	60.156	59.756	60.998	-3.0339					70	24	4	0	0	0	0.72511	1	2366	2366		14.086	0.57807	1	192240			30142	36278	24757	24783	33397	33397					0.12826335257045685
LHRLPIGCD	9	Unmodified	_LHRLPIGCD_					0	0	0			REV__GK2|p.G521Vfs*16|1|0.06|ENSG00000196475|chr4:79406641-79406641|T/-|frameshift_variant	REV__GK2|p.G521Vfs*16|1|0.06|ENSG00000196475|chr4:79406641-79406641|T/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.805419921875	2	512.273844	1022.53313	0.11846	6.0683E-05	-4.1483	-0.0021251	-4.0298	-0.0020644	512.2717007803972	70.78	0.78581	70.78	70.603	71.389	0					23	19	2	0	0	0	0.027462	1	6847	6847		18.324	0	1	466370	+		30143	22834	24758	24784	33398	33398					0.0227693614826876
LHRLWRSRRRR	11	Unmodified	_LHRLWRSRRRR_					0	0	0		ENST00000389561.6_1_12:132551999-132562003:+|nuORF	ENST00000389561.6_1_12:132551999-132562003:+|nuORF	ENST00000389561.6_1_12:132551999-132562003:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.7872314453125	3	531.325814	1590.95561	-0.29621	-0.00015739	-1.7042	-0.00090549	-2.0004	-0.0010629	531.3253591891493	33.459	0.24818	33.459	33.335	33.583	0					6	4	2	0	0	0	0.026512	1	1530	1530		2.8518	1.6199	1	44590			30144	11197	24759	24785	33399	33399					0.18377245996089187
LHRPRRCRYWI	11	Unmodified	_LHRPRRCRYWI_					0	0	0			REV__ENSG00000183695|ENST00000329773|MRGPRX2	REV__ENSG00000183695|ENST00000329773|MRGPRX2	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.7955322265625	3	519.289489	1554.84664	0.57073	0.00029637	-2.5553	-0.0013269	-1.9846	-0.0010306	519.2882252960346	80.118	1.8499	78.423	77.871	79.721	-1.6951					52	36	3	0	0	0	0.026344	1	6738	6738		19.263	14.12	1	142750	+		30145	22377	24760	24786	33400	33400					0.09140898981627288
LHRRRRWRQRR	11	Unmodified	_LHRRRRWRQRR_					0	0	0			REV__ENST00000372724.5_1_10:76586363-76598485:+|nuORF	REV__ENST00000372724.5_1_10:76586363-76598485:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.1976318359375	4	419.757079	1674.99921	0.87102	0.00036562	1.7603	0.00073892	2.6314	0.0011045	419.75769086836993	45.585	0.55438	45.585	45.245	45.8	0					26	12	3	0	0	0	0.02653	1	3154	3154		0.3405	0.3405	1	198920	+		30146	25011	24761	24787	33401	33401					0.18870855493241834
LHRRVAFL	8	Unmodified	_LHRRVAFL_					0	0	0			REV__nc|ENSG00000290184|Q9BZS1-4|FOXP3	REV__nc|ENSG00000290184|Q9BZS1-4|FOXP3	MULTI-MSMS	OvCa99_classI_Rep5	1	506.3171691894531	2	506.314161	1010.61377	0.67561	0.00034207	3.4657	0.0017547	4.1413	0.0020968	506.3157645065489	159.61	1.5206	159.61	159.14	160.66	0					73	30	3	0	0	0	0.74679	1	18789	18789		28.254	1.4582	1	361920	+		30147	16679	24762	24788	33402	33402					0.10888585253474048
LHRTSTHQL	9	Unmodified	_LHRTSTHQL_					0	0	0		nc|ENSG00000111305|Q2KHT4-8|GSG1	nc|ENSG00000111305|Q2KHT4-8|GSG1	nc|ENSG00000111305|Q2KHT4-8|GSG1	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.7974243164062	2	546.799072	1091.58359	-0.72378	-0.00039576	2.6651	0.0014573	1.9413	0.0010615	546.8004745949249	121.35	1.8814	120.01	119.69	121.57	-1.3479					95	36	5	0	0	0	0.56889	1	11503	11503		35.618	3.6634	1	1446200			30148	14959	24763	24789	33403	33403					0.0414618179761419
LHRYKMIS	8	Unmodified	_LHRYKMIS_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D;ENST00000585094.1_1_17:30986131-31048108:-|nuORF	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	OvCa9_classI_Rep2	2	524.2918701171875	2	524.292037	1046.56952	1.403	0.00073556	1.1273	0.00059101	2.5302	0.0013266	524.2927319080771	29.478	0.37709	26.768	26.552	26.929	-2.7097					10	7	2	0	0	0	0.74209	1	723	723		12.959	1.4482	1	11933			30149	7620	24764	24790	33404	33404					0.048098130449716336
LHSAGGRVAEL	11	Unmodified	_LHSAGGRVAEL_					0	0	0			REV__ENSG00000165458|ENST00000298229|INPPL1	REV__ENSG00000165458|ENST00000298229|INPPL1	MULTI-MSMS	OvCa99_classI_Rep5	1	555.8056640625	2	555.306729	1108.59891	0.58251	0.00032347	-4.4139	-0.0024511	-3.8314	-0.0021276	555.8047679703503	162.04	0.66348	162.04	161.61	162.28	0					23	12	3	0	0	0	0.61983	1	18999	18999		42.864	0.46813	1	64407	+		30150	21089	24765	24791	33405	33405					0.048950485947898414
LHSAKVVL	8	Unmodified	_LHSAKVVL_					0	0	0		tr|A0A7D6VQM1|A0A7D6VQM1_9CLOTAspartate/glutamateracemasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03920PE=3SV=1	tr|A0A7D6VQM1|A0A7D6VQM1_9CLOTAspartate/glutamateracemasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03920PE=3SV=1	tr|A0A7D6VQM1|A0A7D6VQM1_9CLOTAspartate/glutamateracemasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03920PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	433.8978576660156	2	433.776545	865.538538	0.45491	0.00019733	-0.57034	-0.0002474	-0.11543	-5.0069E-05	433.7763380555397	20.135	0.57189	18.797	18.637	19.209	-1.3386					16	11	2	0	0	0	0.028476	1	29	29		13.775	0	1	17911			30151	34858	24766	24792	33406	33406					0.10038983002368695
LHSCLRRQL	9	Unmodified	_LHSCLRRQL_					0	0	0		ENSG00000164088|ENST00000323588|PPM1M;ENST00000489606.5_1_3:52280576-52282310:+|nuORF;ENST00000467471.5_1_3:52279924-52282310:+|nuORF;nc|ENSG00000164088|Q96MI6-2|PPM1M	ENSG00000164088|ENST00000323588|PPM1M	ENSG00000164088|ENST00000323588|PPM1M	MULTI-MSMS	OvCa9_classI_Rep2	2	563.3189086914062	2	563.319117	1124.62368	-3.8795	-0.0021854	3.2704	0.0018423	-0.60911	-0.00034313	563.3208339373161	155.36	0.8447	155.13	154.8	155.64	-0.22697					43	26	2	0	0	0	0.5811	1	15826	15826		34.173	5.023	1	63890			30152	6406	24767	24793	33407	33407					0.06635405196539068
LHSDMLTVV	9	Unmodified	_LHSDMLTVV_					0	0	0		ENST00000276390.6_1_8:20078656-20078743:+|nuORF	ENST00000276390.6_1_8:20078656-20078743:+|nuORF	ENST00000276390.6_1_8:20078656-20078743:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.76690673828125	2	507.76806	1013.52157	0.43978	0.0002233	-3.6428	-0.0018497	-3.203	-0.0016264	507.76605298589374	131.19	1.6749	130.96	130.26	131.93	-0.22696					79	33	3	0	0	0	0.58665	1	12883	12883		33.516	0	1	124560			30153	10029	24768	24794	33408	33408					0.015346943342706254
LHSDTRDYI	9	Unmodified	_LHSDTRDYI_					0	0	0		ENST00000533927.5_1_1:249144411-249149911:-|nuORF;nc|ENSG00000171163|Q9BU19-3|ZNF692;nc|ENSG00000171163|Q9BU19-2|ZNF692;ENSG00000171163|ENST00000306601|ZNF692;nc|ENSG00000171163|Q9BU19-5|ZNF692	ENST00000533927.5_1_1:249144411-249149911:-|nuORF	ENST00000533927.5_1_1:249144411-249149911:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	560.2752685546875	2	560.275095	1118.53564	0.23753	0.00013308	0.22337	0.00012515	0.4609	0.00025823	560.2751293232092	105.96	2.1264	105.52	105.15	107.27	-0.43642					121	42	5	0	0	0	0.55588	1	9881	9881		37.159	1.9584	1	1293000			30154	7178	24769	24795	33409	33409					-0.01888936913087491
LHSENRRIDH	10	Unmodified	_LHSENRRIDH_					0	0	0			REV__ENSG00000131067|ENST00000336431|GGT7	REV__ENSG00000131067|ENST00000336431|GGT7	MULTI-SECPEP	OvCa9_classI_Rep2	2	426.2350158691406	3	426.221687	1275.64323	0.2387	0.00010174	0.97555	0.0004158	1.2143	0.00051754	426.22210950290463	43.975	0.94649	41.265	41.005	41.951	-2.7097					24	18	2	0	0	0	0.02739	1	2442	2442		17.468	0	1	24591	+		30155	18996	24770	24796	33410	33410					0.01643452740995599
LHSFCLSLQ	9	Unmodified	_LHSFCLSLQ_					0	0	0		ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2425537109375	2	524.268227	1046.5219	-1.1843	-0.00062092	2.2519	0.0011806	1.0675	0.00055966	524.2696574964623	65.686	0.63327	65.686	65.271	65.904	0					25	15	2	0	0	0	0.027462	1	6056	6056		30.504	6.3009	1	685460			30156	7859	24771	24797	33411	33411					0.000501140541246059
LHSKVREKKN	10	Unmodified	_LHSKVREKKN_					0	0	0		ENSG00000125482|ENST00000334270|TTF1;TTF1|p.K280Tfs*10|1|0.09|ENSG00000125482|chr9:132401983-132401984|-/G|frameshift_variant	ENSG00000125482|ENST00000334270|TTF1	ENSG00000125482|ENST00000334270|TTF1	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8689575195312	2	619.870028	1237.7255	-3.8587	-0.0023919	2.9348	0.0018192	-0.92393	-0.00057272	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.73378	1	15194	15194		26.693	2.1737	1	492670			30157	3711	24772	24798	33412	33412					0.11614974819940471
LHSLATEKSK	10	Unmodified	_LHSLATEKSK_					0	0	0			REV__ENSG00000138068|ENST00000535679|SULT6B1	REV__ENSG00000138068|ENST00000535679|SULT6B1	MULTI-SECPEP	OvCa9_classI_Rep2	2	556.7910766601562	2	557.316763	1112.61897	0.18372	0.00010239	-2.2378	-0.0012471	-2.054	-0.0011448	557.3144475908955	67.314	0.49498	64.653	64.298	64.793	-2.661					14	9	2	0	0	0	0.026931	1	5271	5271		30.318	7.2752	1	18298	+		30158	19505	24773	24799	33413	33413					0.06716799534751772
LHSLHIAHVG	10	Unmodified	_LHSLHIAHVG_					0	0	0		ENSG00000072195|ENST00000312358|SPEG;nc|ENSG00000072195|Q15772-1|SPEG	ENSG00000072195|ENST00000312358|SPEG	ENSG00000072195|ENST00000312358|SPEG	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.8449096679688	2	542.306532	1082.59851	-0.41181	-0.00022333	-0.10229	-5.5473E-05	-0.5141	-0.0002788	542.3060361207292	39.085	0.84745	39.085	38.44	39.287	0					29	18	3	0	0	0	0.026768	1	2257	2257		31.955	0	1	188390			30159	1468	24774	24800	33414	33414					0.06051673665592716
LHSQRSISASS	11	Unmodified	_LHSQRSISASS_					0	0	0			REV__ENSG00000095370|ENST00000314830|SH2D3C	REV__ENSG00000095370|ENST00000314830|SH2D3C	MULTI-MSMS	OvCa9_classI_Rep2	2	586.803466796875	2	586.804551	1171.59455	-5.2111	-0.0030579	2.6168	0.0015355	-2.5943	-0.0015224	586.8058911238584	159.27	2.2635	159.04	158.53	160.79	-0.22696					99	45	3	0	0	0	0.71498	1	16234	16234		24.519	5.4157	1	107570	+		30160	17288	24775	24801	33415	33415					0.015615393812367984
LHSRRAELN	9	Unmodified	_LHSRRAELN_					0	0	0			REV__ENST00000397497.8_2_8:27288866-27309154:+|nuORF	REV__ENST00000397497.8_2_8:27288866-27309154:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.8396606445312	2	548.304521	1094.59449	-0.25433	-0.00013945	1.6625	0.00091154	1.4081	0.00077208	548.3053521976063	58.607	0.24988	58.607	58.446	58.696	0					11	5	3	0	0	0	0.027462	1	4975	4975		26.693	0	1	191220	+		30161	18521	24776	24802	33416	33416					0.05097584171903691
LHSTSNLLMS	10	Unmodified	_LHSTSNLLMS_					0	0	0			REV__nc|ENSG00000188659|Q658L1-2|SAXO2	REV__nc|ENSG00000188659|Q658L1-2|SAXO2	MULTI-MSMS	OvCa99_classI_Rep5	1	551.7855834960938	2	551.781699	1101.54884	1.7618	0.00097214	4.0992	0.0022619	5.861	0.003234	551.783725048928	133.67	0.93605	133.67	133.26	134.2	0					36	19	3	0	0	0	0.49558	1	15558	15558		54.776	1.4249	1	133540	+		30162	22726	24777	24803	33417	33417					0.0021317787463885907
LHSVFLLF	8	Unmodified	_LHSVFLLF_					0	0	0			REV__nc|nan|A1L170-2|C1orf226	REV__nc|nan|A1L170-2|C1orf226	MULTI-MSMS	OvCa9_classI_Rep3	3	488.2857666015625	2	488.286746	974.558939	-1.3295	-0.0006492	-3.4251	-0.0016724	-4.7546	-0.0023216	488.28498397664265	100.97	1.7392	99.369	98.706	100.45	-1.6053					76	33	4	0	0	0	0.49583	3	6881	6876;6881;6887		77.944	9.537	1	591300	+		30163	29239	24778	24804	33418;33419;33420	33419					0.0706415366219062
LHTIQLQL	8	Unmodified	_LHTIQLQL_					0	0	0		tr|A0A553SP46|A0A553SP46_NIACI16SrRNA(cytosine(967)-C(5))-methyltransferaseOS=NialliacirculansOX=1397GN=rsmBPE=3SV=1	REV__ENST00000222511.10_1_7:90001512-90003627:+|nuORF	REV__ENST00000222511.10_1_7:90001512-90003627:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	483.2939758300781	2	483.292559	964.570566	2.6433	0.0012775	-0.16917	-8.1761E-05	2.4741	0.0011957	483.2923228358129	96.205	1.8228	96.205	95.699	97.522	0					65	42	3	0	0	0	0.45246	1	10537	10537		82.305	5.5309	1	1033500			30164	23749	24779	24805	33421	33421					0.08686350685513844
LHTLRAVRG	9	Unmodified	_LHTLRAVRG_					0	0	0		ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.K2074Efs*10|1|0.06|ENSG00000183914|chr17:7786212-7786213|-/TGAGG|frameshift_variant;nc|ENSG00000183914|Q9P225-3|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MULTI-MSMS	OvCa9_classI_Rep2	2	511.8144836425781	2	511.814525	1021.6145	-1.0737	-0.00054956	0.80088	0.0004099	-0.27287	-0.00013966	511.81478887315143	50.018	2.3782	47.224	46.637	49.015	-2.794					105	47	4	0	0	0	0.69403	1	3247	3247		19.997	1.6724	1	277830			30165	8123	24780	24806	33422	33422					0.10455379902521145
LHVCFITP	8	Carbamidomethyl (C)	_LHVC(Carbamidomethyl (C))FITP_	LHVC(1)FITP		LHVC(45)FITP		0	1	0		ENST00000481559.6_1_5:152869375-153085697:+|nuORF;nc|ENSG00000155511|P42261-4|GRIA1;nc|ENSG00000155511|P42261-2|GRIA1;ENSG00000155511|ENST00000285900|GRIA1;nc|ENSG00000155511|P42261-6|GRIA1;nc|ENSG00000155511|P42261-5|GRIA1	ENST00000481559.6_1_5:152869375-153085697:+|nuORF	ENST00000481559.6_1_5:152869375-153085697:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.7606506347656	2	493.760038	985.505523	3.5833	0.0017693	-1.6761	-0.00082761	1.9071	0.00094167	493.7590664833101	133.64	1.4269	132.12	131.8	133.23	-1.5257					73	28	4	0	0	0	0.69415	1	12930	12930		44.531	9.3304	1	430880			30166	5787	24781	24807	33423	33423	57				0.0121903288802514
LHVHACKPF	9	Unmodified	_LHVHACKPF_					0	0	0		ENST00000519935.1_1_7:27209203-27211037:+|nuORF	ENST00000519935.1_1_7:27209203-27211037:+|nuORF	ENST00000519935.1_1_7:27209203-27211037:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	526.2800903320312	2	526.278929	1050.54331	1.9314	0.0010165	2.5087	0.0013203	4.4401	0.0023367	526.280141337681	76.359	0.44007	76.359	76.199	76.639	0					30	10	4	0	0	0	0.22913	1	7645	7645		71.378	8.0716	1	2587100			30167	13096	24782	24808	33424	33424					0.020055438734971176
LHVHACKPF	9	Unmodified	_LHVHACKPF_					0	0	0		ENST00000519935.1_1_7:27209203-27211037:+|nuORF	ENST00000519935.1_1_7:27209203-27211037:+|nuORF	ENST00000519935.1_1_7:27209203-27211037:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	526.278929	1050.54331	-1.0175	-0.00053547	0.9096	0.00047871	-0.10787	-5.6767E-05	526.2817446493568	78.375	0.14793	76.023	75.9	76.048	-2.3527	-0.078623	-0.00020264	NaN	71.378	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11492			30168	13096	24782	24808							0.020055438734971176
LHVHACKPF	9	Unmodified	_LHVHACKPF_					0	0	0		ENST00000519935.1_1_7:27209203-27211037:+|nuORF	ENST00000519935.1_1_7:27209203-27211037:+|nuORF	ENST00000519935.1_1_7:27209203-27211037:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	526.278929	1050.54331	-0.52548	-0.00027655	-2.1708	-0.0011424	-2.6963	-0.001419	526.7791736326018	78.673	0.23149	75.922	75.714	75.945	-2.7514	-0.17951	-0.0034449	NaN	71.378	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26605			30169	13096	24782	24808							0.020055438734971176
LHVPGCQLL	9	Carbamidomethyl (C)	_LHVPGC(Carbamidomethyl (C))QLL_	LHVPGC(1)QLL		LHVPGC(77)QLL		0	1	0		ENST00000495483.5_2_1:161137139-161146869:+|nuORF	ENST00000495483.5_2_1:161137139-161146869:+|nuORF	ENST00000495483.5_2_1:161137139-161146869:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	518.7842407226562	2	518.784044	1035.55354	1.4093	0.00073114	-2.6925	-0.0013968	-1.2832	-0.00066571	518.7824673728311	112.58	1.0395	112.58	112.3	113.33	0					53	22	4	0	0	0	0.19716	1	12805	12805		76.847	8.0598	1	1873300			30170	12778	24783	24809	33425	33425	148				0.03718106808082666
LHVPLPAL	8	Unmodified	_LHVPLPAL_					0	0	0		ENST00000301015.13_2_16:88800318-88802577:-|nuORF	ENST00000301015.13_2_16:88800318-88802577:-|nuORF	ENST00000301015.13_2_16:88800318-88802577:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	430.2739562988281	2	430.273638	858.532724	-0.29706	-0.00012782	0.34891	0.00015013	0.051854	2.2311E-05	430.27363198332677	107.54	1.9628	107.24	106.57	108.54	-0.30836					111	39	5	0	0	0	0.69862	1	10081	10081		43.626	8.4253	1	399440			30171	10179	24784	24810	33426	33426					0.09779884490706081
LHVQRQPWW	9	Unmodified	_LHVQRQPWW_					0	0	0		ENST00000533076.5_2_11:47429076-47433900:+|nuORF;ENST00000531419.5_1_11:47430172-47433900:+|nuORF;ENST00000526614.5_1_11:47431173-47433900:+|nuORF	ENST00000533076.5_2_11:47429076-47433900:+|nuORF	ENST00000533076.5_2_11:47429076-47433900:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	417.2009582519531	3	417.22448	1248.65161	-0.096283	-4.0172E-05	-2.1262	-0.00088709	-2.2225	-0.00092727	417.55834385166446	52.032	0.47447	52.032	51.829	52.304	0					21	10	3	0	0	0	0.027461	1	4057	4057		40.778	3.1783	1	76360			30172	13220	24785	24811	33427	33427					0.03723051448264414
LHVRHGSDEN	10	Unmodified	_LHVRHGSDEN_					0	0	0		ENSG00000162944|ENST00000295049|RFTN2	ENSG00000162944|ENST00000295049|RFTN2	ENSG00000162944|ENST00000295049|RFTN2	MULTI-MSMS	OvCa99_classI_Rep5	1	582.281982421875	2	582.281243	1162.54793	1.2832	0.00074718	-2.7351	-0.0015926	-1.4519	-0.00084543	582.2797365135655	126.98	0.67256	126.98	126.69	127.36	0					30	14	3	0	0	0	0.62299	1	14676	14676		39.253	1.4413	1	902680			30173	6250	24786	24812	33428	33428					-0.026839004500288866
LHVSRRRH	8	Unmodified	_LHVSRRRH_					0	0	0			REV__ENSG00000204480|ENST00000376101|PRAMEF19	REV__ENSG00000204480|ENST00000376101|PRAMEF19	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.8060302734375	2	530.81539	1059.61623	-0.10207	-5.4179E-05	2.596	0.001378	2.4939	0.0013238	530.8165851492745	34.333	0.74884	31.545	31.299	32.048	-2.7881					30	14	3	0	0	0	0.028476	1	1040	1040		28.254	7.7724	1	52214	+		30174	23159	24787	24813	33429	33429					0.0888043371112417
LHVSRRRH	8	Unmodified	_LHVSRRRH_					0	0	0			REV__ENSG00000204480|ENST00000376101|PRAMEF19	REV__ENSG00000204480|ENST00000376101|PRAMEF19	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.81539	1059.61623	-2.4277	-0.0012887	4.8978	0.0025998	2.4701	0.0013112	530.8179286652871	34.594	0.2976	31.885	31.712	32.009	-2.7097	0.16985	0.0016657	NaN	28.254	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10568	+		30175	23159	24787	24813							0.0888043371112417
LHVVLVSQHP	10	Unmodified	_LHVVLVSQHP_					0	0	0		ENST00000357461.6_1_14:67937818-67938346:-|nuORF	ENST00000357461.6_1_14:67937818-67938346:-|nuORF	ENST00000357461.6_1_14:67937818-67938346:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	564.8281860351562	2	564.82984	1127.64513	-0.78673	-0.00044437	-2.5841	-0.0014596	-3.3709	-0.001904	564.8281356979684	55.822	1.7837	53.018	52.731	54.515	-2.804					83	35	4	0	0	0	0.56767	1	3905	3905		45.952	5.1738	1	335610			30176	10717	24788	24814	33430	33430					0.08641113496878461
LHWWLWWLWIV	11	Unmodified	_LHWWLWWLWIV_					0	0	0		ENST00000361229.8_1_X:101976007-102003782:+|nuORF;ENST00000448867.1_1_X:102001081-102003782:+|nuORF	ENST00000361229.8_1_X:101976007-102003782:+|nuORF	ENST00000361229.8_1_X:101976007-102003782:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	546.6311645507812	3	546.630847	1636.87071	2.107	0.0011518	-2.529	-0.0013824	-0.42202	-0.00023069	546.6295963340342	85.967	2.674	85.967	85.624	88.298	0					190	64	5	0	0	0	0.72568	1	9096	9096		6.6596	0.65857	1	59602000			30177	10788	24789	24815	33431	33431					0.0777506268691468
LHYIVVRG	8	Unmodified	_LHYIVVRG_					0	0	0			REV__ENST00000539693.1_1_19:19312736-19313791:-|nuORF	REV__ENST00000539693.1_1_19:19312736-19313791:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	478.7850646972656	2	478.787444	955.560336	-2.4635	-0.0011795	-1.8767	-0.00089854	-4.3402	-0.0020781	478.7864521794397	145.79	1.5385	145.57	144.98	146.52	-0.22696					81	30	4	0	0	0	0.75915	1	14728	14728		20.482	1.1219	1	230950	+		30178	27337	24790	24816	33432	33432					0.08077787750960397
LHYLSWRLKI	10	Unmodified	_LHYLSWRLKI_					0	0	0		ENST00000477950.1_1_7:881559-883270:+|nuORF;nc|ENSG00000164828|O94901-2|SUN1;nc|ENSG00000164828|O94901-7|SUN1	ENST00000477950.1_1_7:881559-883270:+|nuORF	ENST00000477950.1_1_7:881559-883270:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	444.26141357421875	3	443.599435	1327.77648	1.0079	0.00044711	-3.7335	-0.0016562	-2.7256	-0.0012091	443.5976332255893	68.53	1.4991	65.715	65.262	66.761	-2.8144					37	29	2	0	0	0	0.027193	1	2955	2955		22.58	0	1	24921			30179	12482	24791	24817	33433	33433					0.12569923864793964
LHYRRRAG	8	Unmodified	_LHYRRRAG_					0	0	0			REV__sp|Q6SWB7|UL14_HCMVMUncharacterizedproteinUL14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL14PE=3SV=1	REV__sp|Q6SWB7|UL14_HCMVMUncharacterizedproteinUL14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL14PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7932739257812	2	514.796666	1027.57878	-0.39912	-0.00020547	-1.4171	-0.00072951	-1.8162	-0.00093498	514.7958427347872	33.359	0.39677	33.359	33.136	33.533	0					11	7	2	0	0	0	0.028476	1	1542	1542		52.299	9.903	1	649990	+		30180	29425	24792	24818	33434	33434					0.06609342445494804
LHYSQPEKS	9	Unmodified	_LHYSQPEKS_					0	0	0		ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8192138671875	2	544.772188	1087.52982	-0.026893	-1.465E-05	-1.7633	-0.00096059	-1.7902	-0.00097524	544.771365625391	71.712	0.41123	71.712	71.466	71.877	0					17	9	2	0	0	0	0.027462	1	6942	6942		12.812	0.60503	1	389040			30181	6178	24793	24819	33435	33435					-0.0104403542475211
LHYSVKHLL	9	Unmodified	_LHYSVKHLL_					0	0	0			REV__ENST00000368608.3_1_6:116599484-116599676:-|nuORF	REV__ENST00000368608.3_1_6:116599484-116599676:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	555.3267822265625	2	555.326934	1108.63931	2.5192	0.001399	-0.5018	-0.00027866	2.0174	0.0011203	555.3266204801115	94.98	4.6235	94.98	93.883	98.506	0					299	108	6	0	0	0	0.51865	1	10687	10687		40.778	2.9666	1	31877000	+		30182	24921	24794	24820	33436	33436					0.08934014985243266
LIAAGICGLL	10	Carbamidomethyl (C)	_LIAAGIC(Carbamidomethyl (C))GLL_	LIAAGIC(1)GLL		LIAAGIC(45)GLL		0	1	0		tr|A0A553SGB9|A0A553SGB9_NIACICadmium-translocatingP-typeATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	tr|A0A553SGB9|A0A553SGB9_NIACICadmium-translocatingP-typeATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	tr|A0A553SGB9|A0A553SGB9_NIACICadmium-translocatingP-typeATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	500.79522705078125	2	500.79662	999.578688	-0.44531	-0.00022301	-3.6859	-0.0018459	-4.1312	-0.0020689	500.79474539888093	109.47	3.7802	108.32	107.57	111.35	-1.1444					188	73	5	0	0	0	0.5794	1	7904	7904		44.531	7.5026	1	2461100			30183	33141	24795	24821	33437	33437	378				0.07888161610640054
LIAARGSLVLP	11	Unmodified	_LIAARGSLVLP_					0	0	0		ENSG00000162068|ENST00000293973|NTN3	ENSG00000162068|ENST00000293973|NTN3	ENSG00000162068|ENST00000293973|NTN3	MULTI-MSMS	OvCa9_classI_Rep2	2	555.3530883789062	2	555.355691	1108.69683	-4.1933	-0.0023288	0.44804	0.00024882	-3.7453	-0.00208	555.3557970844861	158.57	1.1439	158.34	158.06	159.2	-0.22696					59	23	4	0	0	0	0.64273	1	16110	16110		40.778	12.896	1	239990			30184	6154	24796	24822	33438	33438					0.14682857190791765
LIAARGSLVLP	11	Unmodified	_LIAARGSLVLP_					0	0	0		ENSG00000162068|ENST00000293973|NTN3	ENSG00000162068|ENST00000293973|NTN3	ENSG00000162068|ENST00000293973|NTN3	MULTI-MSMS	OvCa9_classI_Rep3	3	555.3532104492188	2	555.355691	1108.69683	-7.0233	-0.0039004	3.381	0.0018777	-3.6422	-0.0020227	555.3574443782504	158.85	1.8694	157.58	157.26	159.13	-1.267					85	36	5	0	0	0	0.71191	1	13727	13727		25.574	1.3713	1	417810			30185	6154	24796	24822	33439	33439					0.14682857190791765
LIACGKYML	9	Oxidation (M)	_LIACGKYM(Oxidation (M))L_		LIACGKYM(1)L		LIACGKYM(80)L	0	0	1		tr|A0A553STR6|A0A553STR6_NIACIClassIIaldolase/adducinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05655PE=4SV=1	tr|A0A553STR6|A0A553STR6_NIACIClassIIaldolase/adducinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05655PE=4SV=1	tr|A0A553STR6|A0A553STR6_NIACIClassIIaldolase/adducinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05655PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.7410888671875	2	514.269381	1026.52421	2.3741	0.0012209	1.5449	0.0007945	3.919	0.0020154	514.7717079159416	86.747	0.46046	86.747	86.553	87.013	0					16	10	3	0	0	0	0.02705	1	9144	9144		79.939	18.967	1	184290			30186	34523	24797	24823	33440	33440		762			0.012008264675614555
LIACGKYML	9	Oxidation (M)	_LIACGKYM(Oxidation (M))L_					0	0	1		tr|A0A553STR6|A0A553STR6_NIACIClassIIaldolase/adducinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05655PE=4SV=1	tr|A0A553STR6|A0A553STR6_NIACIClassIIaldolase/adducinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05655PE=4SV=1	tr|A0A553STR6|A0A553STR6_NIACIClassIIaldolase/adducinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05655PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	514.269381	1026.52421	-0.061486	-3.1621E-05	5.4424	0.0027989	5.3809	0.0027673	514.2715131960931	89.1	0.29527	86.969	86.846	87.141	-2.1309	0.11106	0.002036	NaN	79.939	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15276			30187	34523	24797	24823				762			0.012008264675614555
LIADSLTVKS	10	Unmodified	_LIADSLTVKS_					0	0	0			REV__nc|ENSG00000181652|Q674R7-3|ATG9B	REV__nc|ENSG00000181652|Q674R7-3|ATG9B	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.267822265625	2	523.808239	1045.60193	0.098332	5.1507E-05	-1.0591	-0.00055478	-0.96079	-0.00050327	523.8076986472147	70.058	1.1051	67.487	67.165	68.27	-2.5707					33	21	2	0	0	0	0.026681	1	5635	5635		22.58	9.7679	1	48448	+		30188	22242	24798	24824	33441	33441					0.0809487892895504
LIAFFRDL	8	Unmodified	_LIAFFRDL_					0	0	0			REV__tr|A0A553SF21|A0A553SF21_NIACIThreonine--tRNAligaseOS=NialliacirculansOX=1397GN=thrSPE=3SV=1	REV__tr|A0A553SF21|A0A553SF21_NIACIThreonine--tRNAligaseOS=NialliacirculansOX=1397GN=thrSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	497.78741455078125	2	497.789653	993.564752	-1.6586	-0.00082566	-2.618	-0.0013032	-4.2767	-0.0021289	497.78818191941025	38.201	0.9397	35.491	35.271	36.211	-2.7097					48	18	4	0	0	0	0.66704	1	1768	1768		50.025	2.1089	1	265770	+		30189	29528	24799	24825	33442	33442					0.06771252173848552
LIAFGVGLSL	10	Unmodified	_LIAFGVGLSL_					0	0	0			REV__ENSG00000137642|ENST00000260197|SORL1	REV__ENSG00000137642|ENST00000260197|SORL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.28704833984375	2	495.305136	988.595718	-1.577	-0.00078111	0.63113	0.0003126	-0.94589	-0.00046851	495.3052490723849	108.46	2.0013	106.73	106.42	108.42	-1.7256					53	38	2	0	0	0	0.026582	1	9914	9914		51.335	0	1	70811	+		30190	19465	24800	24826	33443	33443					0.10096405488093296
LIAGGHKVLI	10	Unmodified	_LIAGGHKVLI_					0	0	0		ENSG00000124177|ENST00000373233|CHD6;CHD6|p.A1178Dfs*18|1|0.01|ENSG00000124177|chr20:41451096-41451097|-/GT|frameshift_variant;CHD6|p.K1913Nfs*11|1|0.03|ENSG00000124177|chr20:41420896-41420897|-/TTGCCATGGCGATAGTA|frameshift_variant;ENST00000476641.2_1_20:40101874-40113142:-|nuORF	ENSG00000124177|ENST00000373233|CHD6	ENSG00000124177|ENST00000373233|CHD6	MULTI-MSMS	OvCa9_classI_Rep3	3	510.8315734863281	2	510.831852	1019.64915	1.2324	0.00062957	-1.715	-0.00087606	-0.48253	-0.00024649	510.8308797433976	121.36	1.4143	120.34	120.01	121.43	-1.0271					50	26	2	0	0	0	0.56767	1	9301	9301		45.952	8.7928	1	296510			30191	3630	24801	24827	33444	33444					0.14011202990604943
LIAGRKGGT	9	Unmodified	_LIAGRKGGT_					0	0	0			REV__tr|A0A7D6VYK3|A0A7D6VYK3_9CLOTAscorbate-specificPTSsystemEIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11250PE=3SV=1	REV__tr|A0A7D6VYK3|A0A7D6VYK3_9CLOTAscorbate-specificPTSsystemEIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11250PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	435.8739929199219	2	436.769252	871.52395	1.1863	0.00051814	3.6333	0.0015869	4.8196	0.0021051	436.7708149916725	110.84	1.009	109.74	109.44	110.45	-1.1038					26	19	2	0	0	0	0.027462	1	8083	8083		5.9211	0	1	24694	+		30192	31819	24802	24828	33445	33445					0.08304910854235459
LIAGSVYC	8	Unmodified	_LIAGSVYC_					0	0	0		RAE1|p.W62Vfs*11|1|0.08|ENSG00000101146|chr20:57354801-57354802|-/AGTGTATATTGTGAGTTTGGAAATT|frameshift_variant	RAE1|p.W62Vfs*11|1|0.08|ENSG00000101146|chr20:57354801-57354802|-/AGTGTATATTGTGAGTTTGGAAATT|frameshift_variant	RAE1|p.W62Vfs*11|1|0.08|ENSG00000101146|chr20:57354801-57354802|-/AGTGTATATTGTGAGTTTGGAAATT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	413.21466064453125	2	413.212389	824.410226	1.3168	0.00054413	-0.55632	-0.00022988	0.76051	0.00031425	413.2120112107626	161.79	0.4106	161.79	161.61	162.02	0					12	7	2	0	0	0	0.7543	1	18974	18974		24.504	1.4673	1	45359			30193	15539	24803	24829	33446	33446					-0.00900320303026092
LIAHKGGVLSR	11	Unmodified	_LIAHKGGVLSR_					0	0	0		tr|A0A553SLJ2|A0A553SLJ2_NIACI3,4-dihydroxy-2-butanone4-phosphatesynthaseOS=NialliacirculansOX=1397GN=ribBPE=3SV=1	tr|A0A553SLJ2|A0A553SLJ2_NIACI3,4-dihydroxy-2-butanone4-phosphatesynthaseOS=NialliacirculansOX=1397GN=ribBPE=3SV=1	tr|A0A553SLJ2|A0A553SLJ2_NIACI3,4-dihydroxy-2-butanone4-phosphatesynthaseOS=NialliacirculansOX=1397GN=ribBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8557739257812	2	575.85639	1149.69823	-0.10129	-5.8328E-05	-0.21739	-0.00012518	-0.31868	-0.00018351	575.8561951150875	69.606	1.0924	66.792	66.512	67.604	-2.8144					59	21	4	0	0	0	0.69455	1	3117	3117		31.53	1.0262	1	329780			30194	33729	24804	24830	33447	33447					0.12936491279538131
LIAHKRTHTG	10	Unmodified	_LIAHKRTHTG_					0	0	0		nc|ENSG00000130803|Q96PQ6-3|ZNF317;nc|ENSG00000130803|Q96PQ6-4|ZNF317;ENST00000591278.5_1_19:9268612-9272106:+|nuORF;ZNF317|p.D533Efs*10|1|0.27|ENSG00000130803|chr19:9161243-9161244|-/GT|frameshift_variant;ENST00000590152.1_1_19:9267931-9272106:+|nuORF;nc|ENSG00000130803|Q96PQ6-2|ZNF317;ENSG00000130803|ENST00000247956|ZNF317	nc|ENSG00000130803|Q96PQ6-3|ZNF317	nc|ENSG00000130803|Q96PQ6-3|ZNF317	MULTI-MSMS	OvCa9_classI_Rep3	3	567.329833984375	2	567.330539	1132.64652	-3.474	-0.0019709	2.1482	0.0012187	-1.3258	-0.00075219	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.70152	1	12162	12162		30.318	3.6248	1	458690			30195	4016	24805	24831	33448	33448					0.08550747585650242
LIAIQLQI	8	Unmodified	_LIAIQLQI_					0	0	0		tr|A0A7D6VTY0|A0A7D6VTY0_9CLOTAminoacidadenylationdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18690PE=4SV=1	tr|A0A7D6VTY0|A0A7D6VTY0_9CLOTAminoacidadenylationdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18690PE=4SV=1	tr|A0A7D6VTY0|A0A7D6VTY0_9CLOTAminoacidadenylationdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18690PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	456.3006896972656	2	456.299853	910.585153	-0.43659	-0.00019922	0.40882	0.00018654	-0.027775	-1.2674E-05	456.29990578700534	88.267	1.6364	86.136	85.854	87.491	-2.1309					77	32	4	0	0	0	0.52992	1	5354	5354		74.517	3.1387	1	559700			30196	35150	24806	24832	33449	33449					0.1262842283365444
LIALAKLYM	9	Unmodified	_LIALAKLYM_					0	0	0		nc|ENSG00000105726|Q9HD20-2|ATP13A1;ENSG00000105726|ENST00000357324|ATP13A1;EHMT1-ATP13A1|1|fusion;ENST00000496082.5_1_19:19764878-19766379:-|nuORF;ENST00000473243.5_1_19:19764878-19766320:-|nuORF	nc|ENSG00000105726|Q9HD20-2|ATP13A1	nc|ENSG00000105726|Q9HD20-2|ATP13A1	MULTI-MSMS	OvCa9_classI_Rep2	2	518.3169555664062	2	518.317189	1034.61982	0.17843	9.2486E-05	-0.46903	-0.00024311	-0.2906	-0.00015062	518.3168968039378	134.8	1.0273	134.58	133.9	134.93	-0.22696					39	20	3	0	0	0	0.63108	1	13361	13361		28.254	2.8041	1	135940			30197	786	24807	24833	33450	33450					0.10389922650097105
LIALRPLIA	9	Unmodified	_LIALRPLIA_					0	0	0			REV__ENSG00000131019|ENST00000367339|ULBP3	REV__ENSG00000131019|ENST00000367339|ULBP3	MULTI-MSMS	OvCa9_classI_Rep2	2	490.3360595703125	2	490.33677	978.658987	0.31976	0.00015679	-1.1553	-0.00056648	-0.83553	-0.00040969	490.3362879264998	135.18	3.9777	134.96	134.64	138.62	-0.22697					225	81	5	0	0	0	0.34496	1	13413	13413		57.811	5.5121	1	7114000	+		30198	18992	24808	24834	33451	33451					0.16880390995993366
LIALYEKHAR	10	Unmodified	_LIALYEKHAR_					0	0	0			REV__ENSG00000066279|ENST00000367409|ASPM	REV__ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	OvCa99_classI_Rep5	1	607.1884155273438	2	607.356222	1212.69789	1.8853	0.001145	-0.9724	-0.00059059	0.9129	0.00055445	607.355372398606	135.13	0.78705	135.13	134.9	135.69	0					22	16	3	0	0	0	0.027062	1	15741	15741		20.947	11.764	1	88315	+		30199	16812	24809	24835	33452	33452					0.10005071559703538
LIALYKHNT	9	Unmodified	_LIALYKHNT_					0	0	0			REV__AREG|p.M69Ifs*39|1|0.03|ENSG00000109321|chr4:74446679-74446679|G/-|frameshift_variant	REV__AREG|p.M69Ifs*39|1|0.03|ENSG00000109321|chr4:74446679-74446679|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.8230590820312	2	536.811116	1071.60768	-2.0794	-0.0011163	1.2027	0.00064562	-0.87673	-0.00047064	536.8116943514071	120	0.9435	118.65	118.3	119.24	-1.3444					34	17	3	0	0	0	0.027441	1	11339	11339		29.15	0	1	42321	+		30200	15650	24810	24836	33453	33453					0.07474022231258459
LIAPWILV	8	Unmodified	_LIAPWILV_					0	0	0			REV__tr|A0A553SF67|A0A553SF67_NIACIPTSsugartransporterOS=NialliacirculansOX=1397GN=CEQ21_08365PE=4SV=1	REV__tr|A0A553SF67|A0A553SF67_NIACIPTSsugartransporterOS=NialliacirculansOX=1397GN=CEQ21_08365PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.27716064453125	2	462.799489	923.584425	-1.3079	-0.00060529	-3.143	-0.0014546	-4.4509	-0.0020599	462.79783269251334	95.055	0.75098	92.586	92.36	93.111	-2.4685					20	14	2	0	0	0	0.028476	1	8364	8364		24.504	0	1	46655	+		30201	29539	24811	24837	33454	33454					0.11957628184620717
LIAPWILV	8	Unmodified	_LIAPWILV_					0	0	0			REV__tr|A0A553SF67|A0A553SF67_NIACIPTSsugartransporterOS=NialliacirculansOX=1397GN=CEQ21_08365PE=4SV=1	REV__tr|A0A553SF67|A0A553SF67_NIACIPTSsugartransporterOS=NialliacirculansOX=1397GN=CEQ21_08365PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	462.799489	923.584425	1.7419	0.00080617	-3.5118	-0.0016252	-1.7698	-0.00081907	462.7977362031167	92.463	0.50211	92.463	92.26	92.762	0	-0.077835	0.00026139	NaN	16.705	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	388490	+		30202	29539	24811	24837							0.11957628184620717
LIAPWILV	8	Unmodified	_LIAPWILV_					0	0	0			REV__tr|A0A553SF67|A0A553SF67_NIACIPTSsugartransporterOS=NialliacirculansOX=1397GN=CEQ21_08365PE=4SV=1	REV__tr|A0A553SF67|A0A553SF67_NIACIPTSsugartransporterOS=NialliacirculansOX=1397GN=CEQ21_08365PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	462.799489	923.584425	-0.23578	-0.00010912	-4.2039	-0.0019456	-4.4397	-0.0020547	462.79742550162814	93.665	0.83528	92.565	92.329	93.165	-1.0995	0.024757	-0.00037929	NaN	16.705	22	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50153	+		30203	29539	24811	24837							0.11957628184620717
LIAPWILV	8	Unmodified	_LIAPWILV_					0	0	0			REV__tr|A0A553SF67|A0A553SF67_NIACIPTSsugartransporterOS=NialliacirculansOX=1397GN=CEQ21_08365PE=4SV=1	REV__tr|A0A553SF67|A0A553SF67_NIACIPTSsugartransporterOS=NialliacirculansOX=1397GN=CEQ21_08365PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	462.799489	923.584425	-0.72317	-0.00033468	-3.5345	-0.0016358	-4.2577	-0.0019705	462.79776128093084	94.444	0.85399	92.548	92.307	93.161	-1.8956	0.0075276	0.0002403	NaN	16.705	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53292	+		30204	29539	24811	24837							0.11957628184620717
LIAQGPVKTY	10	Unmodified	_LIAQGPVKTY_					0	0	0		nc|ENSG00000116748|P23109-2|AMPD1;ENSG00000116748|ENST00000520113|AMPD1	nc|ENSG00000116748|P23109-2|AMPD1	nc|ENSG00000116748|P23109-2|AMPD1	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3161010742188	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.78463	1	14368	14368		20.947	0.95016	1	202430			30205	3205	24812	24838	33455	33455					0.08222889028479585
LIARIPITI	9	Unmodified	_LIARIPITI_					0	0	0		tr|A0A553ST71|A0A553ST71_NIACIOPTfamilyoligopeptidetransporterOS=NialliacirculansOX=1397GN=CEQ21_04365PE=4SV=1	tr|A0A553ST71|A0A553ST71_NIACIOPTfamilyoligopeptidetransporterOS=NialliacirculansOX=1397GN=CEQ21_04365PE=4SV=1	tr|A0A553ST71|A0A553ST71_NIACIOPTfamilyoligopeptidetransporterOS=NialliacirculansOX=1397GN=CEQ21_04365PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	505.34112548828125	2	505.342052	1008.66955	-1.2256	-0.00061935	0.24452	0.00012356	-0.9811	-0.00049579	505.3419478940064	134.8	1.6252	133.68	133.41	135.03	-1.1226					106	32	5	0	0	0	0.24951	1	10928	10928		68.787	7.8149	1	959590			30206	34464	24813	24839	33456	33456					0.16556373650416845
LIAVERFL	8	Unmodified	_LIAVERFL_					0	0	0			REV__RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	REV__RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	480.7969970703125	2	480.797478	959.580402	-0.62495	-0.00030048	0.86212	0.0004145	0.23716	0.00011403	480.7976122112674	115	2.3234	114.88	114.5	116.83	-0.11777					104	46	4	0	0	0	0.60331	1	10948	10948		63.306	8.4117	1	301760	+		30207	21802	24814	24840	33457	33457					0.09899538690888221
LIAYFKIVPS	10	Unmodified	_LIAYFKIVPS_					0	0	0		tr|A0A7D6VXV8|A0A7D6VXV8_9CLOTAzlCfamilyABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15270PE=3SV=1	tr|A0A7D6VXV8|A0A7D6VXV8_9CLOTAzlCfamilyABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15270PE=3SV=1	tr|A0A7D6VXV8|A0A7D6VXV8_9CLOTAzlCfamilyABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15270PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.843017578125	2	575.847167	1149.67978	-2.8608	-0.0016474	-4.0802	-0.0023496	-6.941	-0.0039969	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.59703	1	14750	14750		42.396	4.5846	1	356230			30208	35303	24815	24841	33458	33458					0.11092936584987001
LICIIVMLL	9	Unmodified	_LICIIVMLL_					0	0	0		ENSG00000198523|ENST00000357525|PLN	ENSG00000198523|ENST00000357525|PLN	ENSG00000198523|ENST00000357525|PLN	MULTI-MSMS	OvCa9_classI_Rep3	3	515.8218994140625	2	515.823792	1029.63303	1.3839	0.00071384	-0.75219	-0.000388	0.63169	0.00032584	515.8233107191149	119.78	1.9983	118.75	118.33	120.33	-1.0271					81	39	4	0	0	0	0.22187	1	9085	9085		72.62	0	1	287890			30209	8825	24816	24842	33459	33459					0.1194003743785288
LICILILLT	9	Unmodified	_LICILILLT_					0	0	0		SPECC1L-CDH4|1|fusion;SPECC1L-CDH4|2|fusion;nc|ENSG00000179242|P55283-2|CDH4;ENSG00000179242|ENST00000614565|CDH4	SPECC1L-CDH4|1|fusion	SPECC1L-CDH4|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.7970275878906	2	507.835214	1013.65588	2.0686	0.0010505	3.8827	0.0019718	5.9513	0.0030223	507.8370087364014	78.231	0.57254	78.231	77.968	78.54	0					32	13	3	0	0	0	0.027462	1	7950	7950		25.45	0	1	1708800			30210	32916	24817	24843	33460	33460					0.1495937982696205
LICLTLPVF	9	Unmodified	_LICLTLPVF_					0	0	0		nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6;ENST00000505253.1_1_5:10413496-10422048:+|nuORF	nc|ENSG00000145495|O60337-6|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	MULTI-MSMS	OvCa9_classI_Rep2	2	509.80511474609375	2	509.803914	1017.59328	0.31382	0.00015999	3.0927	0.0015767	3.4065	0.0017367	509.8053412397936	40.93	1.3292	38.22	37.946	39.275	-2.7097					71	26	4	0	0	0	0.52083	1	2130	2130		40.573	7.057	1	327210			30211	5228	24818	24844	33461	33461					0.08518233758786664
LICLYVILF	9	Unmodified	_LICLYVILF_					0	0	0			REV__ENSG00000068650|ENST00000375645|ATP11A	REV__ENSG00000068650|ENST00000375645|ATP11A	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.7809448242188	2	548.827389	1095.64023	-0.34255	-0.000188	-0.76434	-0.00041949	-1.1069	-0.00060749	548.8271063836784	68.695	0.33447	68.695	68.481	68.815	0					13	7	2	0	0	0	0.027462	1	6485	6485		29.842	8.1392	1	315340	+		30212	16855	24819	24845	33462	33462					0.09623093309892283
LICMKKRSK	9	Unmodified	_LICMKKRSK_					0	0	0			REV__RPA2-STX12|1|fusion	REV__RPA2-STX12|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8302001953125	2	553.830472	1105.64639	-0.8401	-0.00046527	-0.072907	-4.0378E-05	-0.91301	-0.00050565	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.62352	1	14342	14342		29.15	1.2673	1	245610	+		30213	18369	24820	24846	33463	33463					0.09779288269783137
LICYQGGLL	9	Carbamidomethyl (C)	_LIC(Carbamidomethyl (C))YQGGLL_	LIC(1)YQGGLL		LIC(66)YQGGLL		0	1	0			REV__tr|A0A7D6VSD8|A0A7D6VSD8_9CLOTUDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranosehydrolaseOS=ClostridiumintestinaleOX=36845GN=pseGPE=4SV=1	REV__tr|A0A7D6VSD8|A0A7D6VSD8_9CLOTUDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranosehydrolaseOS=ClostridiumintestinaleOX=36845GN=pseGPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	518.781494140625	2	518.778428	1035.5423	1.0794	0.00055997	3.6053	0.0018703	4.6847	0.0024303	518.7804547431639	81.714	1.7068	81.714	81.413	83.12	0					127	40	6	0	0	0	0.27546	1	8472	8472		65.803	12.452	1	49057000	+		30214	31492	24821	24847	33464	33464	371				0.02595284713925139
LIDAHVPA	8	Unmodified	_LIDAHVPA_					0	0	0		nc|ENSG00000090924|Q9H7P9-3|PLEKHG2;ENSG00000090924|ENST00000425673|PLEKHG2	nc|ENSG00000090924|Q9H7P9-3|PLEKHG2	nc|ENSG00000090924|Q9H7P9-3|PLEKHG2	MULTI-MSMS	OvCa99_classI_Rep5	1	418.23828125	2	418.237253	834.459953	2.621	0.0010962	-0.12589	-5.2652E-05	2.4951	0.0010436	418.23703937518195	77.026	0.70203	77.026	76.799	77.501	0					34	16	3	0	0	0	0.68312	1	7745	7745		46.766	0	1	1607800			30215	1852	24822	24848	33465	33465					0.03610130697279601
LIDEGTLTI	9	Unmodified	_LIDEGTLTI_					0	0	0			REV__tr|A0A553SHS5|A0A553SHS5_NIACIProteinadenylyltransferaseSelOOS=NialliacirculansOX=1397GN=selOPE=3SV=1	REV__tr|A0A553SHS5|A0A553SHS5_NIACIProteinadenylyltransferaseSelOOS=NialliacirculansOX=1397GN=selOPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	487.77508544921875	2	487.773865	973.533177	0.47998	0.00023412	1.9015	0.00092752	2.3815	0.0011616	487.77467246217884	141.15	1.1038	141.15	140.73	141.83	0					60	21	4	0	0	0	0.24951	1	16497	16497		68.787	2.9837	1	897800	+		30216	29834	24823	24849	33466	33466					0.04535214629231632
LIDEQLHSP	9	Unmodified	_LIDEQLHSP_					0	0	0		nc|ENSG00000157193|Q14114-2|LRP8;nc|ENSG00000157193|Q14114-4|LRP8;nc|ENSG00000157193|Q14114-3|LRP8;ENSG00000157193|ENST00000306052|LRP8	nc|ENSG00000157193|Q14114-2|LRP8	nc|ENSG00000157193|Q14114-2|LRP8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.2625732421875	2	526.274564	1050.53457	-2.2218	-0.0011693	-0.38069	-0.00020035	-2.6025	-0.0013696	526.2742852938004	107.24	1.0507	105.36	105.07	106.12	-1.8785					46	20	4	0	0	0	0.027164	1	9777	9777		79.451	22.73	1	293190			30217	5880	24824	24850	33467	33467					0.011328487179980584
LIDFDSLII	9	Unmodified	_LIDFDSLII_					0	0	0			REV__tr|A0A7D6ZWE6|A0A7D6ZWE6_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=HZF06_07575PE=4SV=1	REV__tr|A0A7D6ZWE6|A0A7D6ZWE6_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=HZF06_07575PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	525.31103515625	2	524.799883	1047.58521	1.1451	0.00060096	0.74719	0.00039213	1.8923	0.00099309	524.8001122505947	149.16	0.62851	149.16	148.87	149.5	0					19	12	2	0	0	0	0.36502	1	17445	17445		55.504	0	1	49679	+		30218	32282	24825	24851	33468	33468					0.06332378042998243
LIDGAAKKG	9	Unmodified	_LIDGAAKKG_					0	0	0		tr|A0A553SHW1|A0A553SHW1_NIACIFAD-bindingoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_13725PE=4SV=1	tr|A0A553SHW1|A0A553SHW1_NIACIFAD-bindingoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_13725PE=4SV=1	tr|A0A553SHW1|A0A553SHW1_NIACIFAD-bindingoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_13725PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	437.2278747558594	2	436.763635	871.512717	-0.043898	-1.9173E-05	-0.11299	-4.9351E-05	-0.15689	-6.8524E-05	436.7635017770058	91.225	0.96625	88.683	88.398	89.364	-2.5425					28	18	2	0	0	0	0.027462	1	7912	7912		16.473	4.2663	1	68420			30219	33320	24826	24852	33469	33469					0.071820887600893
LIDGAAKKG	9	Unmodified	_LIDGAAKKG_					0	0	0		tr|A0A553SHW1|A0A553SHW1_NIACIFAD-bindingoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_13725PE=4SV=1	tr|A0A553SHW1|A0A553SHW1_NIACIFAD-bindingoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_13725PE=4SV=1	tr|A0A553SHW1|A0A553SHW1_NIACIFAD-bindingoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_13725PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	436.763635	871.512717	2.3113	0.0010095	-2.191	-0.00095697	0.12026	5.2527E-05	436.7625883804812	89.908	1.8085	88.606	88.186	89.994	-1.302	-0.021164	-0.0012367	NaN	16.473	47	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42794			30220	33320	24826	24852							0.071820887600893
LIDGAAKKG	9	Unmodified	_LIDGAAKKG_					0	0	0		tr|A0A553SHW1|A0A553SHW1_NIACIFAD-bindingoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_13725PE=4SV=1	tr|A0A553SHW1|A0A553SHW1_NIACIFAD-bindingoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_13725PE=4SV=1	tr|A0A553SHW1|A0A553SHW1_NIACIFAD-bindingoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_13725PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	436.763635	871.512717	-0.28604	-0.00012493	0.30904	0.00013498	0.023008	1.0049E-05	436.7637028141782	90.674	1.0654	88.593	88.361	89.427	-2.0805	-0.034148	0.00094722	NaN	16.473	34	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59515			30221	33320	24826	24852							0.071820887600893
LIDGPHEQN	9	Unmodified	_LIDGPHEQN_					0	0	0			REV__nc|ENSG00000071073|Q9UM21-2|MGAT4A	REV__nc|ENSG00000071073|Q9UM21-2|MGAT4A	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.7861022949219	2	511.748713	1021.48287	2.4742	0.0012661	-1.8653	-0.00095455	0.60889	0.0003116	512.2486679325617	94.84	0.21521	94.84	94.69	94.905	0					7	4	2	0	0	0	0.027403	1	10330	10330		79.713	13.815	1	75911	+		30222	16898	24827	24853	33470	33470					-0.02700894975907886
LIDKKIEV	8	Unmodified	_LIDKKIEV_					0	0	0		tr|A0A7D6ZFW8|A0A7D6ZFW8_9CLOTPutativeDNAmodification/repairradicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19660PE=4SV=1	tr|A0A7D6ZFW8|A0A7D6ZFW8_9CLOTPutativeDNAmodification/repairradicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19660PE=4SV=1	tr|A0A7D6ZFW8|A0A7D6ZFW8_9CLOTPutativeDNAmodification/repairradicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19660PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	479.7832336425781	2	479.302593	956.590633	-0.64833	-0.00031075	-0.38009	-0.00018218	-1.0284	-0.00049292	479.30198932065866	84.794	0.63729	82.533	82.357	82.994	-2.261					16	12	2	0	0	0	0.028476	1	4963	4963		60.972	5.4677	1	40296			30223	35527	24828	24854	33471	33471					0.11060101625469088
LIDKKTIIGLL	11	Unmodified	_LIDKKTIIGLL_					0	0	0			REV__nc|ENSG00000109572|P51790-4|CLCN3	REV__nc|ENSG00000109572|P51790-4|CLCN3	MULTI-MSMS	OvCa9_classI_Rep3	3	409.6075134277344	3	409.607596	1225.80096	1.1396	0.00046679	-0.24169	-9.9E-05	0.89792	0.00036779	409.6074659919173	107.95	5.8573	106.76	106.27	112.13	-1.1978					409	114	4	0	0	0	0.5804	1	7813	7813		46.457	6.3986	1	1037400	+		30224	17934	24829	24855	33472	33472					0.19709139227666128
LIDKNIIYN	9	Unmodified	_LIDKNIIYN_					0	0	0			REV__nc|ENSG00000100796|Q6IN85-5|PPP4R3A	REV__nc|ENSG00000100796|Q6IN85-5|PPP4R3A	MULTI-MSMS	OvCa9_classI_Rep2	2	553.3159790039062	2	553.316232	1104.61791	0.45433	0.00025139	-1.3396	-0.00074121	-0.88526	-0.00048983	553.3153525793638	105.66	2.3731	105.22	104.95	107.32	-0.43642					93	47	4	0	0	0	0.074342	2	9829	9822;9829		104.75	11.603	1	451800	+		30225	17452	24830	24856	33473;33474	33474					0.06978585165848017
LIDMAHDTAIL	11	Unmodified	_LIDMAHDTAIL_					0	0	0			REV__nc|ENSG00000078814|A7E2Y1|MYH7B	REV__nc|ENSG00000078814|A7E2Y1|MYH7B	MSMS	OvCa9_classI_Rep3	3	606.8173828125	2	606.818281	1211.62201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.72	1	94.891	94.391	95.391	-1.8286								0	0	0	0.051331	1	6373	6373		76.774	2.5191	1		+		30226	17031	24831	24857	33475	33475					0.02466306597239054
LIDQRLKRIEV	11	Unmodified	_LIDQRLKRIEV_					0	0	0			REV__ENST00000563805.1_1_16:90028494-90030760:+|nuORF	REV__ENST00000563805.1_1_16:90028494-90030760:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	461.25714111328125	3	461.620788	1381.84053	-2.6644	-0.00123	0.52817	0.00024381	-2.1363	-0.00098615	461.6209691827987	87.855	1.4619	85.229	84.85	86.312	-2.6269					49	28	2	0	0	0	0.026364	1	7564	7564		13.508	6.8483	1	142840	+		30227	19714	24832	24858	33476	33476					0.16488659231072234
LIDREVFVQ	9	Unmodified	_LIDREVFVQ_					0	0	0			REV__ENSG00000099308|ENST00000687212|MAST3	REV__ENSG00000099308|ENST00000687212|MAST3	MULTI-MSMS	OvCa99_classI_Rep5	1	559.8148193359375	2	559.813856	1117.61316	2.2471	0.001258	-0.39448	-0.00022083	1.8526	0.0010371	559.8135749692154	125.52	0.98251	125.52	125.25	126.23	0					61	22	4	0	0	0	0.21395	1	14509	14509		73.975	2.0973	1	2168600	+		30228	17320	24833	24859	33477	33477					0.05905701023084475
LIDRYLSF	8	Unmodified	_LIDRYLSF_					0	0	0			REV__tr|A0A553SHP0|A0A553SHP0_NIACIRegulatoryproteinYycHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13340PE=4SV=1	REV__tr|A0A553SHP0|A0A553SHP0_NIACIRegulatoryproteinYycHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13340PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	513.785888671875	2	513.784567	1025.55458	1.145	0.00058829	0.89371	0.00045917	2.0387	0.0010475	513.7848183585534	119.36	0.68877	119.36	119.05	119.74	0					39	16	4	0	0	0	0.35163	1	13688	13688		97.473	3.4663	1	884990	+		30229	29823	24834	24860	33478	33478					0.04282644448608153
LIDRYLSF	8	Unmodified	_LIDRYLSF_					0	0	0			REV__tr|A0A553SHP0|A0A553SHP0_NIACIRegulatoryproteinYycHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13340PE=4SV=1	REV__tr|A0A553SHP0|A0A553SHP0_NIACIRegulatoryproteinYycHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13340PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.303466796875	2	513.784567	1025.55458	1.3291	0.00068287	-0.72821	-0.00037414	0.60088	0.00030872	513.784111519221	119.97	1.0301	118.95	118.72	119.75	-1.0271					37	20	2	0	0	0	0.028476	1	9122	9122		79.451	16.145	1	60479	+		30230	29823	24834	24860	33479	33479					0.04282644448608153
LIDSLSIIGV	10	Unmodified	_LIDSLSIIGV_					0	0	0			REV__nc|ENSG00000106617|Q9UGJ0-2|PRKAG2	REV__nc|ENSG00000106617|Q9UGJ0-2|PRKAG2	MULTI-MSMS	OvCa9_classI_Rep2	2	515.3110961914062	2	515.313158	1028.61176	-2.0827	-0.0010732	-0.8907	-0.00045899	-2.9734	-0.0015322	515.312623228854	35.485	1.3896	32.775	32.503	33.893	-2.7097					66	27	3	0	0	0	0.65434	1	1469	1469		35.618	0	1	694720	+		30231	17814	24835	24861	33480	33480					0.09860066934356837
LIDVFGKIN	9	Unmodified	_LIDVFGKIN_					0	0	0			REV__ENSG00000147183|ENST00000276127|CPXCR1	REV__ENSG00000147183|ENST00000276127|CPXCR1	MULTI-SECPEP	OvCa9_classI_Rep2	2	509.8208923339844	2	509.800217	1017.58588	-0.48018	-0.00024479	-0.20814	-0.00010611	-0.68832	-0.0003509	509.8000713095078	122.26	0.79014	122.04	121.82	122.61	-0.21803					29	15	3	0	0	0	0.027118	1	11848	11848		108.09	10.615	1	37328	+		30232	20051	24836	24862	33481	33481					0.07779217482720924
LIDVFGKIN	9	Unmodified	_LIDVFGKIN_					0	0	0			REV__ENSG00000147183|ENST00000276127|CPXCR1	REV__ENSG00000147183|ENST00000276127|CPXCR1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	509.800217	1017.58588	1.234	0.00062909	-1.6242	-0.000828	-0.39018	-0.00019891	509.7993517395772	123.19	0.98627	122.16	121.78	122.77	-1.0377	0.043598	-0.00094465	NaN	108.09	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54515	+		30233	20051	24836	24862							0.07779217482720924
LIDVIEHR	8	Unmodified	_LIDVIEHR_					0	0	0		ENSG00000164125|ENST00000585682|GASK1B;nc|ENSG00000164125|Q6UWH4-2|GASK1B	ENSG00000164125|ENST00000585682|GASK1B	ENSG00000164125|ENST00000585682|GASK1B	MULTI-MSMS	OvCa9_classI_Rep2	2	497.7867431640625	2	497.787641	993.56073	-1.6587	-0.00082566	1.4226	0.00070815	-0.23606	-0.00011751	497.78818191941025	38.201	0.9397	35.491	35.271	36.211	-2.7097					48	18	4	0	0	0	0.66057	1	1774	1774		51.335	1.8939	1	265770			30234	6417	24837	24863	33482	33482					0.06369162680130103
LIEDINDNAPL	11	Unmodified	_LIEDINDNAPL_					0	0	0		nc|ENSG00000102290|Q9BZA7-7|PCDH11X;nc|ENSG00000102290|Q9BZA7-2|PCDH11X;ENST00000361724.3_1_X:91090458-91134302:+|nuORF;nc|ENSG00000099715|Q9BZA8-3|PCDH11Y;nc|ENSG00000099715|Q9BZA8-2|PCDH11Y;nc|ENSG00000099715|Q9BZA8-4|PCDH11Y;nc|ENSG00000102290|Q9BZA7-6|PCDH11X;ENSG00000099715|ENST00000698851|PCDH11Y;nc|ENSG00000102290|Q9BZA7-5|PCDH11X;nc|ENSG00000102290|Q9BZA7-4|PCDH11X;nc|ENSG00000102290|Q9BZA7-3|PCDH11X;nc|ENSG00000102290|Q9BZA7-8|PCDH11X;nc|ENSG00000099715|Q9BZA8|PCDH11Y;ENSG00000102290|ENST00000682573|PCDH11X;PCDH11X|p.N175Tfs*4|1|0.06|ENSG00000102290|chrX:91836025-91836025|A/-|frameshift_variant	nc|ENSG00000102290|Q9BZA7-7|PCDH11X	nc|ENSG00000102290|Q9BZA7-7|PCDH11X	MULTI-SECPEP	OvCa9_classI_Rep4_	4	409.25360107421875	3	409.546954	1225.61903	1.72	0.00070441	3.9128	0.0016025	5.6327	0.0023069	409.54850617739714	86.656	3.9353	84.029	83.463	87.398	-2.6269					131	78	3	0	0	0	0.025714	1	7660	7660		25.126	3.4402	1	211830			30235	1974	24838	24864	33483	33483					0.015247547440594644
LIEDINDNAPL	11	Unmodified	_LIEDINDNAPL_					0	0	0		nc|ENSG00000102290|Q9BZA7-7|PCDH11X;nc|ENSG00000102290|Q9BZA7-2|PCDH11X;ENST00000361724.3_1_X:91090458-91134302:+|nuORF;nc|ENSG00000099715|Q9BZA8-3|PCDH11Y;nc|ENSG00000099715|Q9BZA8-2|PCDH11Y;nc|ENSG00000099715|Q9BZA8-4|PCDH11Y;nc|ENSG00000102290|Q9BZA7-6|PCDH11X;ENSG00000099715|ENST00000698851|PCDH11Y;nc|ENSG00000102290|Q9BZA7-5|PCDH11X;nc|ENSG00000102290|Q9BZA7-4|PCDH11X;nc|ENSG00000102290|Q9BZA7-3|PCDH11X;nc|ENSG00000102290|Q9BZA7-8|PCDH11X;nc|ENSG00000099715|Q9BZA8|PCDH11Y;ENSG00000102290|ENST00000682573|PCDH11X;PCDH11X|p.N175Tfs*4|1|0.06|ENSG00000102290|chrX:91836025-91836025|A/-|frameshift_variant	nc|ENSG00000102290|Q9BZA7-7|PCDH11X	nc|ENSG00000102290|Q9BZA7-7|PCDH11X	MULTI-MATCH	OvCa9_classI_Rep2	2		3	409.546954	1225.61903	-0.36648	-0.00015009	7.1828	0.0029417	6.8163	0.0027916	409.54973940505954	85.366	3.5074	83.875	83.357	86.864	-1.4906	-0.13884	0.00029706	NaN	25.126	113	69	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195730			30236	1974	24838	24864							0.015247547440594644
LIEDINDNAPL	11	Unmodified	_LIEDINDNAPL_					0	0	0		nc|ENSG00000102290|Q9BZA7-7|PCDH11X;nc|ENSG00000102290|Q9BZA7-2|PCDH11X;ENST00000361724.3_1_X:91090458-91134302:+|nuORF;nc|ENSG00000099715|Q9BZA8-3|PCDH11Y;nc|ENSG00000099715|Q9BZA8-2|PCDH11Y;nc|ENSG00000099715|Q9BZA8-4|PCDH11Y;nc|ENSG00000102290|Q9BZA7-6|PCDH11X;ENSG00000099715|ENST00000698851|PCDH11Y;nc|ENSG00000102290|Q9BZA7-5|PCDH11X;nc|ENSG00000102290|Q9BZA7-4|PCDH11X;nc|ENSG00000102290|Q9BZA7-3|PCDH11X;nc|ENSG00000102290|Q9BZA7-8|PCDH11X;nc|ENSG00000099715|Q9BZA8|PCDH11Y;ENSG00000102290|ENST00000682573|PCDH11X;PCDH11X|p.N175Tfs*4|1|0.06|ENSG00000102290|chrX:91836025-91836025|A/-|frameshift_variant	nc|ENSG00000102290|Q9BZA7-7|PCDH11X	nc|ENSG00000102290|Q9BZA7-7|PCDH11X	MULTI-MATCH	OvCa9_classI_Rep3	3		3	409.546954	1225.61903	-0.14856	-6.0844E-05	7.2295	0.0029608	7.081	0.0029	409.5498209883925	86.358	4.1769	84.138	83.636	87.813	-2.2204	0.12411	0.00035452	NaN	25.126	135	82	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	322330			30237	1974	24838	24864							0.015247547440594644
LIEFCEPVTIL	11	Unmodified	_LIEFCEPVTIL_					0	0	0			REV__ENSG00000181381|ENST00000682922|DDX60L	REV__ENSG00000181381|ENST00000682922|DDX60L	MULTI-MSMS	OvCa9_classI_Rep2	2	638.8433227539062	2	638.846507	1275.67846	-1.9957	-0.001275	-3.2883	-0.0021007	-5.2841	-0.0033757	638.8443025550549	101.16	1.4869	100.4	99.973	101.46	-0.76401					90	29	4	0	0	0	0.65947	2	9263	9263;9289		39.253	1.4413	1	623200	+		30238	22230	24839	24865	33484;33485	33484					0.05164934433946655
LIEFLKYFSC	10	Unmodified	_LIEFLKYFSC_					0	0	0		L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|187|1|anti-sense	L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|187|1|anti-sense	L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|187|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	631.8307495117188	2	631.828117	1261.64168	-0.38857	-0.00024551	3.2033	0.0020239	2.8147	0.0017784	631.8300640239108	96.734	2.0306	94.905	94.42	96.451	-1.8286					120	39	5	0	0	0	0.27679	3	6370	6356;6370;6390		83.647	24.767	1	1113600			30239	14756	24840	24866	33486;33487;33488	33487					0.021326826080212413
LIEFLKYFSC	10	Unmodified	_LIEFLKYFSC_					0	0	0		L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|187|1|anti-sense	L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|187|1|anti-sense	L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|187|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	631.8307495117188	2	631.828117	1261.64168	1.1077	0.00069985	1.7243	0.0010894	2.8319	0.0017893	631.8291515503455	97.264	1.9616	94.885	94.418	96.38	-2.3786					111	38	4	0	0	0	0.35539	1	8620	8620		74.165	4.5374	1	1062800			30240	14756	24840	24866	33489	33489					0.021326826080212413
LIEGQNIL	8	Unmodified	_LIEGQNIL_					0	0	0			REV__tr|A0A553SSW6|A0A553SSW6_NIACIHNHnucleasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03670PE=4SV=1	REV__tr|A0A553SSW6|A0A553SSW6_NIACIHNHnucleasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03670PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	449.72784423828125	2	450.263468	898.512382	1.3177	0.00059333	0.49219	0.00022161	1.8099	0.00081494	450.2636076691416	131.84	0.32275	131.84	131.62	131.95	0					9	6	2	0	0	0	0.028476	1	15325	15325		35.201	0	1	33676	+		30241	30889	24841	24867	33490	33490					0.05906669040234647
LIEGRLIV	8	Unmodified	_LIEGRLIV_					0	0	0			REV__tr|A0A553SQS8|A0A553SQS8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07195PE=4SV=1	REV__tr|A0A553SQS8|A0A553SQS8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07195PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	456.79827880859375	2	456.797478	911.580402	0.40268	0.00018394	-0.77327	-0.00035323	-0.37058	-0.00016928	456.7970629432732	104.69	4.1681	103.25	102.81	106.98	-1.4342					186	80	4	0	0	0	0.38598	2	7331	7331;7344		90.777	8.4716	1	1565700	+		30242	30658	24842	24868	33491;33492	33491					0.1210753869089558
LIEGRLIV	8	Unmodified	_LIEGRLIV_					0	0	0			REV__tr|A0A553SQS8|A0A553SQS8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07195PE=4SV=1	REV__tr|A0A553SQS8|A0A553SQS8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07195PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.7983093261719	2	456.797478	911.580402	-0.19337	-8.8331E-05	-0.21738	-9.9301E-05	-0.41075	-0.00018763	456.7973138081142	105.4	4.1348	103.39	102.95	107.09	-2.0161					221	81	4	0	0	0	0.61436	1	9658	9658		60.972	0	1	1556700	+		30243	30658	24842	24868	33493	33493					0.1210753869089558
LIEHLLSEL	9	Unmodified	_LIEHLLSEL_					0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-3|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	MULTI-MSMS	OvCa9_classI_Rep2	2	533.8103637695312	2	533.810782	1065.60701	-0.41034	-0.00021904	0.17338	9.2554E-05	-0.23696	-0.00012649	533.8107432944282	113.1	1.7279	112.98	112.67	114.4	-0.12174					88	34	4	0	0	0	0.19716	1	10758	10758		76.847	0	1	138910			30244	2828	24843	24869	33494	33494					0.07683182791561194
LIEHLLSEL	9	Unmodified	_LIEHLLSEL_					0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-3|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	MULTI-MSMS	OvCa9_classI_Rep3	3	533.8104248046875	2	533.810782	1065.60701	0.87011	0.00046448	-1.0135	-0.00054102	-0.14339	-7.6541E-05	533.810113388829	114.03	2.0545	112.97	112.63	114.69	-1.055					91	40	3	0	0	0	0.16524	1	8402	8402		82.305	0	1	264940			30245	2828	24843	24869	33495	33495					0.07683182791561194
LIEHLLSEL	9	Unmodified	_LIEHLLSEL_					0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1;nc|ENSG00000111530|Q86VP6-3|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.81005859375	2	533.810782	1065.60701	-0.37036	-0.0001977	0.090578	4.8352E-05	-0.27978	-0.00014935	533.8107068230561	114.36	1.887	112.96	112.63	114.51	-1.3977					88	36	3	0	0	0	0.19716	1	10636	10636		76.847	0	1	280680			30246	2828	24843	24869	33496	33496					0.07683182791561194
LIEIVTDDIVL	11	Unmodified	_LIEIVTDDIVL_					0	0	0			REV__tr|A0A7D6ZVK9|A0A7D6ZVK9_9CLOTGer(X)CfamilysporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04605PE=3SV=1	REV__tr|A0A7D6ZVK9|A0A7D6ZVK9_9CLOTGer(X)CfamilysporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04605PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	621.8666381835938	2	621.863211	1241.71187	1.2031	0.00074817	1.6719	0.0010397	2.875	0.0017879	621.8642146259473	109.24	2.5626	109.24	108.24	110.8	0					152	57	3	0	0	0	0.55686	1	12440	12440		39.253	8.9351	1	1458000	+		30247	32256	24844	24870	33497	33497					0.10068259477475294
LIEKKKLN	8	Unmodified	_LIEKKKLN_					0	0	0			REV__ENST00000358951.6_1_1:220387230-220406181:-|nuORF	REV__ENST00000358951.6_1_1:220387230-220406181:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.2890319824219	2	493.32386	984.633166	-0.032566	-1.6065E-05	-0.38141	-0.00018816	-0.41398	-0.00020423	493.3235480136996	57.318	0.55707	57.318	57.093	57.65	0					27	12	3	0	0	0	0.028476	1	4813	4813		29.15	0	1	376610	+		30248	24808	24845	24871	33498	33498					0.14023496753702602
LIEKNINFV	9	Unmodified	_LIEKNINFV_					0	0	0		tr|A0A7D6VRD4|A0A7D6VRD4_9CLOTDegVfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05130PE=4SV=1	tr|A0A7D6VRD4|A0A7D6VRD4_9CLOTDegVfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05130PE=4SV=1	tr|A0A7D6VRD4|A0A7D6VRD4_9CLOTDegVfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05130PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	545.316162109375	2	545.318774	1088.623	-2.8527	-0.0015556	-0.96726	-0.00052747	-3.8199	-0.0020831	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.61208	1	11852	11852		30.504	0	1	337600			30249	34919	24846	24872	33499	33499					0.08222889028456848
LIELKELGEL	10	Unmodified	_LIELKELGEL_					0	0	0			REV__nc|ENSG00000164342|O15455-2|TLR3	REV__nc|ENSG00000164342|O15455-2|TLR3	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.8463134765625	2	578.844822	1155.67509	-1.3483	-0.00078048	1.8421	0.0010663	0.49378	0.00028582	578.8459272004168	81.977	0.8683	79.294	79.012	79.881	-2.6829					42	17	3	0	0	0	0.60504	1	6767	6767		41.427	2.4051	1	281350	+		30250	20979	24847	24873	33500	33500					0.10348007651577973
LIELKELGEL	10	Unmodified	_LIELKELGEL_					0	0	0			REV__nc|ENSG00000164342|O15455-2|TLR3	REV__nc|ENSG00000164342|O15455-2|TLR3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	578.844822	1155.67509	-0.12907	-7.4709E-05	2.0659	0.0011958	1.9368	0.0011211	578.8462129253511	80.765	0.95125	79.07	78.719	79.67	-1.6951	-0.11197	0.00016322	NaN	41.427	54	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	330320	+		30251	20979	24847	24873							0.10348007651577973
LIELLLPK	8	Unmodified	_LIELLLPK_					0	0	0		nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;STAT2|p.V424Dfs*116|1|0.05|ENSG00000170581|chr12:56349496-56349497|-/GAGTGGGATCTATGGATGTCTGGTAGAT|frameshift_variant;ENST00000557156.1_1_12:56748248-56748633:-|nuORF	nc|ENSG00000170581|P52630-4|STAT2	nc|ENSG00000170581|P52630-4|STAT2	MULTI-MSMS	OvCa9_classI_Rep2	2	469.81744384765625	2	469.817879	937.621205	0.87275	0.00041003	-0.75105	-0.00035286	0.1217	5.7177E-05	469.8173779893202	129.72	2.0809	129.49	129.22	131.3	-0.22696					76	41	3	0	0	0	0.7224	1	12773	12773		38.806	4.6336	1	247220			30252	7120	24848	24874	33501	33501					0.14989880010512024
LIEMGLAQL	9	Oxidation (M)	_LIEM(Oxidation (M))GLAQL_		LIEM(1)GLAQL		LIEM(85)GLAQL	0	0	1			REV__tr|A0A553STQ6|A0A553STQ6_NIACIHelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05570PE=4SV=1	REV__tr|A0A553STQ6|A0A553STQ6_NIACIHelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05570PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	502.2781677246094	2	502.27826	1002.54197	1.2313	0.00061846	-2.9359	-0.0014746	-1.7046	-0.00085617	502.27667389611	123.35	1.5162	123.35	122.86	124.37	0					81	32	5	0	0	0	0.14998	1	14246	14246		84.916	8.0689	1	2587700	+		30253	30997	24849	24875	33502	33502		686			0.0407986499405979
LIENIVRLAL	10	Unmodified	_LIENIVRLAL_					0	0	0			REV__tr|A0A553SHR4|A0A553SHR4_NIACI5-methyltetrahydropteroyltriglutamate--homocysteineS-methyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_13560PE=4SV=1	REV__tr|A0A553SHR4|A0A553SHR4_NIACI5-methyltetrahydropteroyltriglutamate--homocysteineS-methyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_13560PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	577.3677978515625	2	577.368798	1152.72304	0.41999	0.00024249	-0.64357	-0.00037158	-0.22358	-0.00012909	577.3683674642078	126.91	1.704	125.83	125.44	127.14	-1.0715					108	32	5	0	0	0	0.48198	1	9934	9934		56.721	0	1	1015500	+		30254	29827	24850	24876	33503	33503					0.15279126362293027
LIENKINP	8	Unmodified	_LIENKINP_					0	0	0		nc|ENSG00000119509|Q9Y283-2|INVS;ENSG00000119509|ENST00000262457|INVS	nc|ENSG00000119509|Q9Y283-2|INVS	nc|ENSG00000119509|Q9Y283-2|INVS	MULTI-SECPEP	OvCa9_classI_Rep2	2	470.81207275390625	2	470.776742	939.538931	0.8452	0.0003979	-1.1136	-0.00052423	-0.26835	-0.00012633	470.7755571918076	66.098	0.44623	63.402	63.17	63.617	-2.6958					12	8	2	0	0	0	0.028476	1	5103	5103		12.959	0	1	11466			30255	3367	24851	24877	33504	33504					0.06674357931558461
LIEPQPIVP	9	Unmodified	_LIEPQPIVP_					0	0	0			REV__ENSG00000019549|ENST00000020945|SNAI2	REV__ENSG00000019549|ENST00000020945|SNAI2	MULTI-SECPEP	OvCa9_classI_Rep2	2	503.3253173828125	2	503.302593	1004.59063	-0.13272	-6.6801E-05	-0.86637	-0.00043605	-0.9991	-0.00050285	503.30194254086933	111.59	1.823	111.45	111.03	112.85	-0.13961					68	36	5	0	0	0	0.027051	1	10683	10683		102.77	1.1726	1	83873	+		30256	16537	24852	24878	33505	33505					0.08852101625461728
LIEPQPIVP	9	Unmodified	_LIEPQPIVP_					0	0	0			REV__ENSG00000019549|ENST00000020945|SNAI2	REV__ENSG00000019549|ENST00000020945|SNAI2	MULTI-SECPEP	OvCa9_classI_Rep3	3	503.32568359375	2	503.302593	1004.59063	0.43499	0.00021893	-1.4833	-0.00074653	-1.0483	-0.0005276	503.30070876838454	113.47	0.87612	112.4	112.1	112.98	-1.0753					25	16	2	0	0	0	0.027265	1	8363	8363		102.77	17.858	1	12599	+		30257	16537	24852	24878	33506	33506					0.08852101625461728
LIEQLIEEF	9	Unmodified	_LIEQLIEEF_					0	0	0		tr|A0A7D7A190|A0A7D7A190_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15655PE=4SV=1	tr|A0A7D7A190|A0A7D7A190_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15655PE=4SV=1	tr|A0A7D7A190|A0A7D7A190_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15655PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.375244140625	2	567.308072	1132.60159	-0.26912	-0.00015268	-2.3478	-0.0013319	-2.6169	-0.0014846	567.3071941341814	64.412	0.66184	64.412	64.132	64.793	0					27	15	3	0	0	0	0.027255	1	5855	5855		82.75	26.029	1	447760			30258	36029	24853	24879	33507	33507					0.04059459209088345
LIESFSATL	9	Unmodified	_LIESFSATL_					0	0	0		ENST00000485332.7_1_X:221743-228403:-|nuORF;ENSG00000178605|ENST00000326153|GTPBP6	ENST00000485332.7_1_X:221743-228403:-|nuORF	ENST00000485332.7_1_X:221743-228403:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	490.7711486816406	2	490.768583	979.522613	1.2551	0.00061598	0.92146	0.00045222	2.1766	0.0010682	490.76891226316144	98.366	0.75922	98.366	98.079	98.838	0					42	17	4	0	0	0	0.13154	1	10831	10831		88.643	8.7036	1	892930			30259	7765	24854	24880	33508	33508					0.03203231974816845
LIESHREK	8	Unmodified	_LIESHREK_					0	0	0		tr|A0A553SSF3|A0A553SSF3_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_03015PE=4SV=1	tr|A0A553SSF3|A0A553SSF3_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_03015PE=4SV=1	tr|A0A553SSF3|A0A553SSF3_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_03015PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	506.2817687988281	2	506.282723	1010.55089	0.054618	2.7652E-05	0.68922	0.00034894	0.74383	0.00037659	506.283148253681	57.081	0.94834	57.081	56.702	57.65	0					41	21	3	0	0	0	0.38598	1	4771	4771		90.777	5.4172	1	1145700			30260	34371	24855	24881	33509	33509					0.04603974674762412
LIETFMLCQL	10	Unmodified	_LIETFMLCQL_					0	0	0			REV__ENST00000444986.1_1_6:28864339-28864980:+|nuORF	REV__ENST00000444986.1_1_6:28864339-28864980:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	605.81591796875	2	605.814153	1209.61375	0.98318	0.00059562	1.6	0.00096931	2.5832	0.0015649	605.8149294907378	152.12	3.19	152.12	151.74	154.93	0					156	68	3	0	0	0	0.28845	2	17866	17866;17995		82.241	5.2932	1	906760	+		30261	25882	24856	24882	33510;33511	33510					0.01733036356267803
LIETFVRL	8	Unmodified	_LIETFVRL_					0	0	0		ENSG00000147234|ENST00000683843|FRMPD3	ENSG00000147234|ENST00000683843|FRMPD3	ENSG00000147234|ENST00000683843|FRMPD3	MULTI-MSMS	OvCa9_classI_Rep2	2	495.80255126953125	2	495.80276	989.590967	1.19	0.00059	-1.4612	-0.00072446	-0.27119	-0.00013446	495.8020130680457	129.44	1.2355	129.21	128.57	129.81	-0.22696					60	24	3	0	0	0	0.67745	1	12709	12709		47.916	7.343	1	70530			30262	5344	24857	24883	33512	33512					0.09575521345323068
LIEVYDEV	8	Unmodified	_LIEVYDEV_					0	0	0			REV__tr|A0A553SNF8|A0A553SNF8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24305PE=4SV=1	REV__tr|A0A553SNF8|A0A553SNF8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24305PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.7960205078125	2	490.252766	978.490978	-0.060382	-2.9602E-05	0.57713	0.00028294	0.51675	0.00025334	490.2529229802756	64.829	0.64264	64.829	64.588	65.231	0					27	15	2	0	0	0	0.028476	1	5933	5933		25.45	0	1	1539200	+		30263	30418	24858	24884	33513	33513					0.0008723922085209779
LIEYIVFPI	9	Unmodified	_LIEYIVFPI_					0	0	0		tr|A0A7D6VSQ1|A0A7D6VSQ1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11535PE=4SV=1	tr|A0A7D6VSQ1|A0A7D6VSQ1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11535PE=4SV=1	tr|A0A7D6VSQ1|A0A7D6VSQ1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11535PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8297119140625	2	553.828443	1105.64233	1.4061	0.00077877	1.5012	0.0008314	2.9073	0.0016102	553.8291816775361	139.45	3.0735	137.95	136.76	139.84	-1.4952					150	61	3	0	0	0	0.6959	1	13779	13779		19.36	0	1	110800			30264	35046	24859	24885	33514	33514					0.09373845319373686
LIEYTSRYCYR	11	Unmodified	_LIEYTSRYCYR_					0	0	0			REV__ENST00000378954.8_1_2:38570492-38570555:-|nuORF	REV__ENST00000378954.8_1_2:38570492-38570555:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	488.81268310546875	3	489.574738	1465.70238	0.34374	0.00016829	-3.5397	-0.0017329	-3.196	-0.0015647	489.57291020515623	93.471	0.47026	92.303	92.105	92.575	-1.168					13	8	2	0	0	0	0.02625	1	8367	8367		5.6988	0	1	17344	+		30265	25150	24860	24886	33515	33515					-0.011838320797096458
LIFCEVFD	8	Carbamidomethyl (C)	_LIFC(Carbamidomethyl (C))EVFD_	LIFC(1)EVFD		LIFC(42)EVFD		0	1	0			REV__ENSG00000188582|ENST00000340634|PAQR9	REV__ENSG00000188582|ENST00000340634|PAQR9	MULTI-MSMS	OvCa9_classI_Rep2	2	521.7477416992188	2	521.749336	1041.48412	1.0627	0.00055446	-4.4821	-0.0023385	-3.4194	-0.0017841	521.7468417167843	126.33	0.83704	126.09	125.85	126.69	-0.2359					42	16	4	0	0	0	0.7043	1	12330	12330		42.474	6.8562	1	183870	+		30266	22720	24861	24887	33516	33516	264				-0.034963969313594134
LIFDSVKKPS	10	Unmodified	_LIFDSVKKPS_					0	0	0			REV__tr|A0A553STW9|A0A553STW9_NIACIPyruvatedehydrogenasecomplexrepressorOS=NialliacirculansOX=1397GN=CEQ21_05850PE=4SV=1	REV__tr|A0A553STW9|A0A553STW9_NIACIPyruvatedehydrogenasecomplexrepressorOS=NialliacirculansOX=1397GN=CEQ21_05850PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3297119140625	2	567.331882	1132.64921	-2.3399	-0.0013275	-1.3687	-0.0007765	-3.7086	-0.002104	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.79213	1	14541	14541		19.997	3.2794	1	241060	+		30267	31018	24862	24888	33517	33517					0.0881915819995811
LIFEAKDKN	9	Unmodified	_LIFEAKDKN_					0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	MULTI-MSMS	OvCa99_classI_Rep5	1	539.3032836914062	2	539.300581	1076.58661	0.55248	0.00029795	2.3733	0.0012799	2.9258	0.0015779	539.3018467331764	160.84	2.0705	160.84	160.45	162.53	0					127	40	6	0	0	0	0.1804	1	18906	18906		79.713	10.926	1	6909800	+		30268	19028	24863	24889	33518	33518					0.05138012131760661
LIFEPAQPNL	10	Unmodified	_LIFEPAQPNL_					0	0	0			REV__ENSG00000103194|ENST00000219473|USP10	REV__ENSG00000103194|ENST00000219473|USP10	MULTI-MSMS	OvCa99_classI_Rep5	1	571.316162109375	2	571.316232	1140.61791	0.80935	0.0004624	1.6427	0.00093847	2.452	0.0014009	571.3166368464565	153.5	0.63794	153.5	153.15	153.78	0					17	12	3	0	0	0	0.5675	1	17986	17986		45.972	0	1	33574	+		30269	17601	24864	24890	33519	33519					0.053225851658453394
LIFFGVVVD	9	Unmodified	_LIFFGVVVD_					0	0	0			REV__tr|A0A7D6ZEG0|A0A7D6ZEG0_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13585PE=4SV=1	REV__tr|A0A7D6ZEG0|A0A7D6ZEG0_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13585PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	504.7904357910156	2	504.791861	1007.56917	0.939	0.000474	-3.3544	-0.0016933	-2.4154	-0.0012193	504.7900463752076	124.31	1.103	124.31	123.87	124.98	0					34	23	2	0	0	0	0.47884	1	14321	14321		44.531	0	1	140960	+		30270	31946	24865	24891	33520	33520					0.06568716596768809
LIFFIFFYS	9	Unmodified	_LIFFIFFYS_					0	0	0			REV__tr|A0A553SU93|A0A553SU93_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_06530PE=4SV=1	REV__tr|A0A553SU93|A0A553SU93_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_06530PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.3035888671875	2	598.823161	1195.63177	1.4188	0.00084962	2.0602	0.0012337	3.4791	0.0020833	598.8248595446313	138.79	0.14131	138.79	138.69	138.83	0					4	2	2	0	0	0	0.027462	1	16191	16191		25.45	6.3466	1	32525	+		30271	31053	24866	24892	33521	33521					0.0417786266496023
LIFFLAYV	8	Unmodified	_LIFFLAYV_					0	0	0		PKDREJ|p.H2048Tfs*3|1|0.05|ENSG00000130943|chr22:46257182-46257182|A/-|frameshift_variant;ENSG00000130943|ENST00000253255|PKDREJ	PKDREJ|p.H2048Tfs*3|1|0.05|ENSG00000130943|chr22:46257182-46257182|A/-|frameshift_variant	PKDREJ|p.H2048Tfs*3|1|0.05|ENSG00000130943|chr22:46257182-46257182|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.2927551269531	2	493.291497	984.568441	0.8364	0.00041259	1.6848	0.00083109	2.5212	0.0012437	493.29220672489055	32.044	1.3124	29.349	28.84	30.153	-2.6954					72	40	2	0	0	0	0.73579	1	753	753		10.185	0	1	42685			30272	4028	24867	24893	33522	33522					0.07553921947703657
LIFFLVMGSVF	11	Unmodified	_LIFFLVMGSVF_					0	0	0		tr|A0A7D6ZJ57|A0A7D6ZJ57_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07295PE=4SV=1	tr|A0A7D6ZJ57|A0A7D6ZJ57_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07295PE=4SV=1	tr|A0A7D6ZJ57|A0A7D6ZJ57_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07295PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	637.2890014648438	2	636.856678	1271.6988	1.31	0.00083426	-4.0188	-0.0025594	-2.7088	-0.0017251	637.3557223718107	154.29	0.49631	154.29	154.07	154.57	0					11	9	2	0	0	0	0.025611	1	18083	18083		35.618	1.4457	1	37587			30273	35636	24868	24894	33523	33523					0.07382149884369937
LIFKIMINP	9	Unmodified	_LIFKIMINP_					0	0	0		ENST00000507667.1_3_4:141445649-141445805:+|nuORF	ENST00000507667.1_3_4:141445649-141445805:+|nuORF	ENST00000507667.1_3_4:141445649-141445805:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2515258789062	2	544.830463	1087.64637	0.96586	0.00052623	-2.7624	-0.001505	-1.7965	-0.0009788	545.3303031454676	156.35	0.70749	156.35	156.04	156.75	0					20	13	2	0	0	0	0.027462	1	18351	18351		31.955	11.958	1	36962			30274	12932	24869	24895	33524	33524					0.10605611541427606
LIFLLGIPE	9	Unmodified	_LIFLLGIPE_					0	0	0		tr|A0A553SGA7|A0A553SGA7_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10500PE=4SV=1	tr|A0A553SGA7|A0A553SGA7_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10500PE=4SV=1	tr|A0A553SGA7|A0A553SGA7_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10500PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	507.8125305175781	2	507.815336	1013.61612	-0.47217	-0.00023978	-4.1397	-0.0021022	-4.6119	-0.002342	507.8132436809137	108.94	1.7138	107.74	107.32	109.03	-1.1978					102	32	5	0	0	0	0.34496	1	7843	7843		57.811	3.0889	1	1384800			30275	33135	24870	24896	33525	33525					0.10985576147891152
LIFLLPLIN	9	Unmodified	_LIFLLPLIN_					0	0	0		ENSG00000164751|ENST00000357039|PEX2	ENSG00000164751|ENST00000357039|PEX2	ENSG00000164751|ENST00000357039|PEX2	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.8177490234375	2	528.346803	1054.67905	2.2003	0.0011625	-3.6115	-0.0019081	-1.4113	-0.00074564	528.3447831131724	100.58	0.44978	100.58	100.28	100.73	0					27	10	3	0	0	0	0.027462	1	11166	11166		18.324	5.3652	1	838480			30276	6483	24871	24897	33526	33526					0.15390141935949941
LIFLYFWWRRG	11	Unmodified	_LIFLYFWWRRG_					0	0	0		ENST00000471075.1_1_3:171371881-171395443:-|nuORF	ENST00000471075.1_1_3:171371881-171395443:-|nuORF	ENST00000471075.1_1_3:171371881-171395443:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3114624023438	3	519.622351	1555.84522	0.21198	0.00011015	1.8393	0.00095576	2.0513	0.0010659	519.959214854683	84.166	0.41277	81.503	81.363	81.776	-2.6629					9	8	2	0	0	0	0.02653	1	7033	7033		3.4087	0	1	24465			30277	12374	24872	24898	33527	33527					0.08953588164467874
LIFMVLLLP	9	Unmodified	_LIFMVLLLP_					0	0	0		nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.8391723632812	2	529.837757	1057.66096	-0.12634	-6.6942E-05	3.738	0.0019805	3.6117	0.0019136	529.8396112652142	33.122	0.94161	30.427	30.203	31.144	-2.6954					31	18	2	0	0	0	0.68641	1	863	863		21.702	0	1	64225			30278	4569	24873	24899	33528	33528					0.13443683689592945
LIFPATWLL	9	Unmodified	_LIFPATWLL_					0	0	0		FLVCR1|p.I290Nfs*26|1|0.07|ENSG00000162769|chr1:212863851-212863855|TTTAT/-|frameshift_variant;ENSG00000162769|ENST00000366971|FLVCR1	FLVCR1|p.I290Nfs*26|1|0.07|ENSG00000162769|chr1:212863851-212863855|TTTAT/-|frameshift_variant	FLVCR1|p.I290Nfs*26|1|0.07|ENSG00000162769|chr1:212863851-212863855|TTTAT/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	537.32470703125	2	537.323328	1072.6321	2.1745	0.0011684	-3.4886	-0.0018745	-1.3142	-0.00070615	537.3213874407987	120.5	0.66223	120.5	120.3	120.97	0					23	15	2	0	0	0	0.21078	1	13869	13869		74.517	10.309	1	1701200			30279	6230	24874	24900	33529	33529					0.09869282384806866
LIFPATWLL	9	Unmodified	_LIFPATWLL_					0	0	0		FLVCR1|p.I290Nfs*26|1|0.07|ENSG00000162769|chr1:212863851-212863855|TTTAT/-|frameshift_variant;ENSG00000162769|ENST00000366971|FLVCR1	FLVCR1|p.I290Nfs*26|1|0.07|ENSG00000162769|chr1:212863851-212863855|TTTAT/-|frameshift_variant	FLVCR1|p.I290Nfs*26|1|0.07|ENSG00000162769|chr1:212863851-212863855|TTTAT/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	537.3211669921875	2	537.323328	1072.6321	-2.2978	-0.0012347	-2.0338	-0.0010928	-4.3315	-0.0023274	537.3220280625594	119.58	1.0849	119.41	119.2	120.29	-0.17137					58	21	4	0	0	0	0.22913	1	11512	11512		71.378	2.8932	1	144740			30280	6230	24874	24900	33530	33530					0.09869282384806866
LIFPGISPIV	10	Unmodified	_LIFPGISPIV_					0	0	0		tr|A0A553SUG6|A0A553SUG6_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06990PE=3SV=1	tr|A0A553SUG6|A0A553SUG6_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06990PE=3SV=1	tr|A0A553SUG6|A0A553SUG6_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06990PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	528.3260498046875	2	528.328611	1054.64267	1.662	0.00087808	0.006729	3.5551E-06	1.6687	0.00088164	528.3285336006301	128.7	3.0639	128.7	128.47	131.53	0					107	64	2	0	0	0	0.69986	1	15103	15103		30.504	1.3541	1	313740			30281	34607	24875	24901	33531	33531					0.11753265039237704
LIFQICSNLN	10	Unmodified	_LIFQICSNLN_					0	0	0		ENST00000341618.8_2_21:30547632-30547791:+|nuORF	ENST00000341618.8_2_21:30547632-30547791:+|nuORF	ENST00000341618.8_2_21:30547632-30547791:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.8280639648438	2	582.807716	1163.60088	2.179	0.0012699	0.55573	0.00032388	2.7347	0.0015938	582.8079278699837	113.45	0.3735	113.45	113.2	113.57	0					18	9	3	0	0	0	0.026681	1	12900	12900		52.937	8.5595	1	149530			30282	10569	24876	24902	33532	33532					0.02562341288398784
LIFRYGVQSQ	10	Unmodified	_LIFRYGVQSQ_					0	0	0			REV__ENST00000381215.3_1_12:133521939-133522296:-|nuORF	REV__ENST00000381215.3_1_12:133521939-133522296:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.88787841796875	3	404.224146	1209.65061	1.264	0.00051096	-3.5424	-0.0014319	-2.2784	-0.00092097	404.2224215116007	30.778	0.2492	30.778	30.582	30.831	0					7	4	2	0	0	0	0.026949	1	1216	1216		22.562	9.0536	1	8349.6	+		30283	25193	24877	24903	33533	33533					0.054167922887017994
LIFTAQVTGH	10	Unmodified	_LIFTAQVTGH_					0	0	0			REV__nc|ENSG00000196663|O15040-2|TECPR2	REV__nc|ENSG00000196663|O15040-2|TECPR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.7885131835938	2	543.800749	1085.58694	1.7425	0.00094755	0.41297	0.00022457	2.1554	0.0011721	544.3019779258408	82.97	0.33768	82.97	82.824	83.161	0					9	7	2	0	0	0	0.026931	1	8614	8614		37.812	11.015	1	156870	+		30284	22853	24878	24904	33534	33534					0.04757431851612637
LIFTFHHVL	9	Unmodified	_LIFTFHHVL_					0	0	0			REV__L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|340|3|anti-sense	REV__L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|340|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.7803344726562	2	563.824027	1125.6335	0.21399	0.00012065	-0.52344	-0.00029513	-0.30945	-0.00017447	564.3247344645242	69.45	0.94447	69.45	68.939	69.883	0					49	22	4	0	0	0	0.027462	1	6560	6560		25.45	1.2474	1	744280	+		30285	28371	24879	24905	33535	33535					0.07570916473559919
LIFVGGGLVE	10	Unmodified	_LIFVGGGLVE_					0	0	0		tr|A0A7D7A4G3|A0A7D7A4G3_9CLOTYcxBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01565PE=4SV=1	tr|A0A7D7A4G3|A0A7D7A4G3_9CLOTYcxBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01565PE=4SV=1	tr|A0A7D7A4G3|A0A7D7A4G3_9CLOTYcxBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01565PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.3246765136719	2	502.294768	1002.57498	2.4305	0.0012208	0.071746	3.6038E-05	2.5023	0.0012569	502.2946601592348	121.21	0.69473	121.21	120.97	121.66	0					34	15	3	0	0	0	0.026768	1	13928	13928		24.203	0	1	546560			30286	36143	24880	24906	33536	33536					0.07379815108436105
LIFVVFSRD	9	Unmodified	_LIFVVFSRD_					0	0	0		ENST00000409835.5_1_2:63587012-63815411:-|nuORF	ENST00000409835.5_1_2:63587012-63815411:-|nuORF	ENST00000409835.5_1_2:63587012-63815411:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	548.318359375	2	548.313492	1094.61243	1.1753	0.00064441	0.86969	0.00047687	2.045	0.0011213	548.3139072965608	138.66	0.7691	138.66	138.31	139.07	0					45	15	4	0	0	0	0.36502	1	16171	16171		55.504	0	1	233040			30287	11536	24881	24907	33537	33537					0.06890906374064798
LIFWALALI	9	Unmodified	_LIFWALALI_					0	0	0			REV__ENSG00000198786|ENST00000361567|MT-ND5	REV__ENSG00000198786|ENST00000361567|MT-ND5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.809814453125	2	530.333696	1058.65284	-1.6727	-0.00088707	-3.3369	-0.0017697	-5.0096	-0.0026567	530.3315579059886	81.566	0.5871	78.856	78.494	79.081	-2.7106					23	11	3	0	0	0	0.02744	1	6680	6680		49.211	5.094	1	79506	+		30288	23061	24882	24908	33538	33538					0.12585872764452688
LIFWKFFE	8	Unmodified	_LIFWKFFE_					0	0	0			REV__tr|A0A553SL50|A0A553SL50_NIACIProteasePrsWOS=NialliacirculansOX=1397GN=CEQ21_19965PE=3SV=1	REV__tr|A0A553SL50|A0A553SL50_NIACIProteasePrsWOS=NialliacirculansOX=1397GN=CEQ21_19965PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	565.3071899414062	2	565.307678	1128.6008	0.20207	0.00011423	-0.0030182	-1.7062E-06	0.19906	0.00011253	565.3076159501649	96.83	2.3607	95.871	95.481	97.841	-0.95857					161	47	5	0	0	0	0.35163	1	8829	8829		97.473	6.8718	1	3204400	+		30289	30187	24883	24909	33539	33539					0.04164709350698104
LIFWKFFE	8	Unmodified	_LIFWKFFE_					0	0	0			REV__tr|A0A553SL50|A0A553SL50_NIACIProteasePrsWOS=NialliacirculansOX=1397GN=CEQ21_19965PE=3SV=1	REV__tr|A0A553SL50|A0A553SL50_NIACIProteasePrsWOS=NialliacirculansOX=1397GN=CEQ21_19965PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	565.3087158203125	2	565.307678	1128.6008	-0.66072	-0.00037351	0.91043	0.00051467	0.24971	0.00014116	565.3081769044711	97.601	2.4979	95.841	95.465	97.963	-1.7595					157	48	5	0	0	0	0.2826	5	6532	6532;6538;6544;6562;6576		110.34	12.865	1	5088000	+		30290	30187	24883	24909	33540;33541;33542;33543;33544	33540					0.04164709350698104
LIFWKFFE	8	Unmodified	_LIFWKFFE_					0	0	0			REV__tr|A0A553SL50|A0A553SL50_NIACIProteasePrsWOS=NialliacirculansOX=1397GN=CEQ21_19965PE=3SV=1	REV__tr|A0A553SL50|A0A553SL50_NIACIProteasePrsWOS=NialliacirculansOX=1397GN=CEQ21_19965PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.308837890625	2	565.307678	1128.6008	1.1361	0.00064226	-0.74395	-0.00042056	0.39217	0.0002217	565.3072068648027	98.126	2.7067	95.747	95.368	98.074	-2.3786					164	52	5	0	0	0	0.2826	1	8804	8804		110.34	12.865	1	4552600	+		30291	30187	24883	24909	33545	33545					0.04164709350698104
LIGAIVGAIKV	11	Unmodified	_LIGAIVGAIKV_					0	0	0			REV__nc|ENSG00000173482|P28827|PTPRM	REV__nc|ENSG00000173482|P28827|PTPRM	MULTI-MSMS	OvCa9_classI_Rep3	3	527.3544921875	2	527.35516	1052.69577	-1.3167	-0.00069437	1.4574	0.00076855	0.14067	7.4184E-05	527.3557825152012	135.19	1.3288	134.08	133.72	135.05	-1.1076					53	26	3	0	0	0	0.72493	1	10920	10920		16.473	1.6083	1	53368	+		30292	21777	24884	24910	33546	33546					0.17152642821906738
LIGALPMAIVA	11	Unmodified	_LIGALPMAIVA_					0	0	0			REV__ENSG00000091664|ENST00000263160|SLC17A6	REV__ENSG00000091664|ENST00000263160|SLC17A6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.2799682617188	2	534.827921	1067.64129	-0.82844	-0.00044307	3.5639	0.0019061	2.7355	0.001463	534.8297085024353	47.552	0.70564	44.445	44.082	44.787	-3.1077					22	13	2	0	0	0	0.025652	1	2585	2585		24.203	3.2558	1	28575	+		30293	17255	24885	24911	33547	33547					0.11017307678821453
LIGCKMLM	8	Carbamidomethyl (C),Oxidation (M)	_LIGC(Carbamidomethyl (C))KMLM(Oxidation (M))_	LIGC(1)KMLM	LIGCKM(0.104)LM(0.896)	LIGC(45)KMLM	LIGCKM(-9.3)LM(9.3)	0	1	1		ENST00000300682.14_2_17:77082467-77082989:+|nuORF	ENST00000300682.14_2_17:77082467-77082989:+|nuORF	ENST00000300682.14_2_17:77082467-77082989:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	491.25048828125	2	491.250134	980.485715	0.57581	0.00028286	2.6639	0.0013086	3.2397	0.0015915	491.2512795650569	141.76	0.74835	141.76	141.44	142.18	0					21	14	2	0	0	0	0.69415	1	16566	16566		44.531	7.5026	2	61563			30294	10175	24886	24912	33548	33548	103	291			-0.005308024385954013
LIGCYIAISRY	11	Unmodified	_LIGCYIAISRY_					0	0	0		ENSG00000138271|ENST00000260843|GPR87	ENSG00000138271|ENST00000260843|GPR87	ENSG00000138271|ENST00000260843|GPR87	MULTI-SECPEP	OvCa9_classI_Rep2	2	424.9103088378906	3	424.565403	1270.67438	0.97967	0.00041593	-3.9066	-0.0016586	-2.927	-0.0012427	424.5635565673437	65.99	1.0923	63.294	62.922	64.014	-2.6958					48	21	3	0	0	0	0.025306	1	5052	5052		53.089	15.581	1	72928			30295	4671	24887	24913	33549	33549					0.04986889730844268
LIGEASFPVM	10	Unmodified	_LIGEASFPVM_					0	0	0		nc|ENSG00000198420|Q9Y4C2-2|TCAF1;ENSG00000198420|ENST00000479870|TCAF1	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	nc|ENSG00000198420|Q9Y4C2-2|TCAF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.2638549804688	2	532.27826	1062.54197	0.070028	3.7274E-05	2.1748	0.0011576	2.2448	0.0011949	532.2793876465528	45.091	0.49407	45.091	44.795	45.289	0					13	10	2	0	0	0	0.026822	1	3096	3096		30.504	9.5567	1	152360			30296	8817	24888	24914	33550	33550					0.013198649940704854
LIGEITELQN	10	Unmodified	_LIGEITELQN_					0	0	0		tr|A0A553SQI8|A0A553SQI8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07725PE=4SV=1	tr|A0A553SQI8|A0A553SQI8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07725PE=4SV=1	tr|A0A553SQI8|A0A553SQI8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07725PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	565.3069458007812	2	565.308603	1128.60265	0.20207	0.00011423	-1.6397	-0.00092695	-1.4377	-0.00081272	565.3076159501649	96.83	2.3607	95.871	95.481	97.841	-0.95857					161	47	5	0	0	0	0.10076	1	8823	8823		113.41	3.0744	1	3204400			30297	34166	24889	24915	33551	33551					0.04349673578008151
LIGEITELQN	10	Unmodified	_LIGEITELQN_					0	0	0		tr|A0A553SQI8|A0A553SQI8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07725PE=4SV=1	tr|A0A553SQI8|A0A553SQI8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07725PE=4SV=1	tr|A0A553SQI8|A0A553SQI8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07725PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	565.3091430664062	2	565.308603	1128.60265	-0.66072	-0.00037351	-0.72628	-0.00041058	-1.387	-0.00078408	565.3081769044711	97.601	2.4979	95.841	95.465	97.963	-1.7595					157	48	5	0	0	0	0.20801	1	6590	6590		93.195	0.052222	1	5088000			30298	34166	24889	24915	33552	33552					0.04349673578008151
LIGFYQPD	8	Unmodified	_LIGFYQPD_					0	0	0		GMPPA|p.L191Ifs*11|1|0.04|ENSG00000144591|chr2:219504163-219504164|-/A|frameshift_variant;GMPPA|p.L191Ffs*19|1|0.04|ENSG00000144591|chr2:219504165-219504166|-/CCAGGCACAGGCATGCAGTCGGGTG|frameshift_variant;GMPPA|p.G205Qfs*19|1|0.19|ENSG00000144591|chr2:219504205-219504206|-/CA|frameshift_variant;ENSG00000144591|ENST00000313597|GMPPA;nc|ENSG00000144591|Q96IJ6-2|GMPPA	GMPPA|p.L191Ifs*11|1|0.04|ENSG00000144591|chr2:219504163-219504164|-/A|frameshift_variant	GMPPA|p.L191Ifs*11|1|0.04|ENSG00000144591|chr2:219504163-219504164|-/A|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	476.3211975097656	2	476.742368	951.470183	0.65196	0.00031082	3.0774	0.0014671	3.7293	0.0017779	476.7437027291135	109.15	2.1492	107.95	107.51	109.66	-1.1978					54	40	2	0	0	0	0.028476	1	7963	7963		38.806	1.647	1	12206			30299	5163	24890	24916	33553	33553					-0.007493063681408785
LIGHTIVTV	9	Unmodified	_LIGHTIVTV_					0	0	0		nc|ENSG00000143771|Q9P003-2|CNIH4;ENSG00000143771|ENST00000465271|CNIH4	nc|ENSG00000143771|Q9P003-2|CNIH4	nc|ENSG00000143771|Q9P003-2|CNIH4	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.3133239746094	2	476.794935	951.575317	-0.50918	-0.00024277	0.64497	0.00030752	0.13579	6.4744E-05	476.7950505589263	115.04	1.1855	114.92	114.65	115.84	-0.11777					51	23	4	0	0	0	0.027462	1	10950	10950		12.207	0	1	197740			30300	5092	24891	24917	33554	33554					0.09759234828300123
LIGIGFGYIV	10	Unmodified	_LIGIGFGYIV_					0	0	0		tr|A0A7D6ZQH2|A0A7D6ZQH2_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00345PE=3SV=1	tr|A0A7D6ZQH2|A0A7D6ZQH2_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00345PE=3SV=1	tr|A0A7D6ZQH2|A0A7D6ZQH2_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00345PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.267578125	2	526.312961	1050.61137	-1.1719	-0.00061677	-3.4636	-0.0018229	-4.6354	-0.0024397	526.3110721487936	90.261	1.3266	88.181	87.747	89.073	-2.0805					61	25	5	0	0	0	0.026839	1	5653	5653		35.201	0	1	183520			30301	35701	24892	24918	33555	33555					0.08808692005140983
LIGIPETL	8	Unmodified	_LIGIPETL_					0	0	0		tr|A0A553SK20|A0A553SK20_NIACIFxsAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_17815PE=4SV=1	tr|A0A553SK20|A0A553SK20_NIACIFxsAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_17815PE=4SV=1	tr|A0A553SK20|A0A553SK20_NIACIFxsAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_17815PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	428.2615661621094	2	428.262936	854.51132	-2.1797	-0.00093349	-0.96416	-0.00041291	-3.1439	-0.0013464	428.2624599299376	144.02	1.6837	143.79	143.2	144.88	-0.22697					114	33	5	0	0	0	0.74595	1	14430	14430		14.664	0	1	330270			30302	33568	24893	24919	33556	33556					0.0782445467133357
LIGKPLKLN	9	Unmodified	_LIGKPLKLN_					0	0	0			REV__NUAK2|p.I548Lfs*12|1|0.11|ENSG00000163545|chr1:205303695-205303696|-/CCCAGCTACTAGGGAGGCTGAG|frameshift_variant	REV__NUAK2|p.I548Lfs*12|1|0.11|ENSG00000163545|chr1:205303695-205303696|-/CCCAGCTACTAGGGAGGCTGAG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	498.33367919921875	2	498.334227	994.653902	-1.4326	-0.00071391	1.262	0.00062888	-0.17064	-8.5035E-05	498.3347342059933	136.81	1.8563	135.72	135.27	137.12	-1.0858					84	37	3	0	0	0	0.34496	1	11122	11122		57.811	2.3071	1	104120	+		30303	20851	24894	24920	33557	33557					0.15636087133373167
LIGNKAFKKY	10	Unmodified	_LIGNKAFKKY_					0	0	0		tr|A0A553SSK6|A0A553SSK6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03275PE=4SV=1	tr|A0A553SSK6|A0A553SSK6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03275PE=4SV=1	tr|A0A553SSK6|A0A553SSK6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03275PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	591.3720703125	2	591.355691	1180.69683	-0.65193	-0.00038552	-2.756	-0.0016298	-3.4079	-0.0020153	591.3540851676166	73.095	0.94278	70.608	70.282	71.225	-2.4873					36	18	3	0	0	0	0.026752	1	3518	3518		27.882	0	1	97119			30304	34386	24895	24921	33558	33558					0.1137085719078641
LIGPFTLKSAS	11	Unmodified	_LIGPFTLKSAS_					0	0	0			REV__nc|ENSG00000051341|O75417-2|POLQ	REV__nc|ENSG00000051341|O75417-2|POLQ	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3298950195312	2	567.331882	1132.64921	-3.474	-0.0019709	-0.21845	-0.00012393	-3.6925	-0.0020949	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.64273	1	12167	12167		40.778	5.6261	1	458690	+		30305	16687	24896	24922	33559	33559					0.0881915819995811
LIGQIAINL	9	Unmodified	_LIGQIAINL_					0	0	0			REV__tr|A0A7D6ZGX0|A0A7D6ZGX0_9CLOTcysteinedesulfuraseOS=ClostridiumintestinaleOX=36845GN=HZF06_00440PE=3SV=1	REV__tr|A0A7D6ZGX0|A0A7D6ZGX0_9CLOTcysteinedesulfuraseOS=ClostridiumintestinaleOX=36845GN=HZF06_00440PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.2846374511719	2	477.80276	953.590967	0.56885	0.0002718	-2.1863	-0.0010446	-1.6174	-0.00077282	477.80166103464586	90.242	1.1188	87.667	87.298	88.417	-2.575					36	21	3	0	0	0	0.027462	1	7758	7758		29.15	14.285	1	49250	+		30306	32010	24897	24923	33560	33560					0.11231521345303008
LIGRGVRWV	9	Unmodified	_LIGRGVRWV_					0	0	0			REV__ENST00000258991.7_1_17:62225843-62225912:-|nuORF	REV__ENST00000258991.7_1_17:62225843-62225912:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	528.3281860351562	2	528.327268	1054.63998	0.61734	0.00032616	1.7049	0.00090073	2.3222	0.0012269	528.3279822328798	127.76	3.0131	127.54	127.09	130.11	-0.22697					168	60	4	0	0	0	0.46377	1	12579	12579		45.952	3.5558	1	313700	+		30307	23915	24898	24924	33561	33561					0.11484854424952573
LIGSSLKK	8	Unmodified	_LIGSSLKK_					0	0	0		chr8:41490617-41497509|97|18.29|0.31|5.91|+|1|GOLGA7,GOLGA7|1	chr8:41490617-41497509|97|18.29|0.31|5.91|+|1|GOLGA7,GOLGA7|1	chr8:41490617-41497509|97|18.29|0.31|5.91|+|1|GOLGA7,GOLGA7|1	MULTI-MSMS	OvCa9_classI_Rep2	2	423.27490234375	2	423.276378	844.538203	-1.0746	-0.00045487	-1.9263	-0.00081535	-3.0009	-0.0012702	423.27545611036373	140.26	1.6211	140.03	139.45	141.07	-0.22696					84	32	4	0	0	0	0.75991	1	14020	14020		21.702	1.2205	1	166850			30308	548	24899	24925	33562	33562					0.10971563282521402
LIGTKTLLLN	10	Unmodified	_LIGTKTLLLN_					0	0	0			REV__ENST00000588631.5_1_18:39629439-39644714:+|nuORF	REV__ENST00000588631.5_1_18:39629439-39644714:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.8018188476562	2	543.350074	1084.6856	-0.76722	-0.00041687	0.2689	0.00014611	-0.49832	-0.00027076	543.3501729720285	37.508	1.2788	37.508	37.298	38.576	0					79	27	5	0	0	0	0.027001	1	2100	2100		35.152	3.6222	1	5255900	+		30309	27890	24900	24926	33563	33563					0.1466403509666634
LIGVPVSAL	9	Unmodified	_LIGVPVSAL_					0	0	0		tr|A0A553SRW1|A0A553SRW1_NIACITrimericintracellularcationchannelfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01940PE=3SV=1	tr|A0A553SRW1|A0A553SRW1_NIACITrimericintracellularcationchannelfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01940PE=3SV=1	tr|A0A553SRW1|A0A553SRW1_NIACITrimericintracellularcationchannelfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01940PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	434.7793884277344	2	434.778754	867.542954	-0.57428	-0.00024968	3.6175	0.0015728	3.0432	0.0013231	434.7802329991387	60.785	2.8032	58.015	56.62	59.423	-2.7702					118	53	4	0	0	0	0.58665	1	4494	4494		33.516	1.5607	1	373020			30310	34306	24901	24927	33564	33564					0.10388447425293634
LIHELKQTL	9	Unmodified	_LIHELKQTL_					0	0	0		ENSG00000158417|ENST00000289371|EIF5B;TXNDC9-EIF5B|1|fusion	ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	MULTI-MSMS	OvCa99_classI_Rep5	1	547.8350830078125	2	547.832049	1093.64954	1.434	0.00078558	3.8405	0.002104	5.2745	0.0028895	547.8339684252273	148.67	1.771	148.67	148.37	150.14	0					93	35	4	0	0	0	0.21231	1	17385	17385		74.255	15.473	1	1096700			30311	5950	24902	24928	33565	33565					0.10646577919806077
LIHGYRPV	8	Unmodified	_LIHGYRPV_					0	0	0		nc|ENSG00000188992|Q6XZB0-4|LIPI;nc|ENSG00000188992|Q6XZB0-5|LIPI;ENSG00000188992|ENST00000681601|LIPI;nc|ENSG00000188992|Q6XZB0-2|LIPI;nc|ENSG00000188992|Q6XZB0-7|LIPI;nc|ENSG00000188992|Q6XZB0-6|LIPI;nc|ENSG00000188992|Q6XZB0-3|LIPI	nc|ENSG00000188992|Q6XZB0-4|LIPI	nc|ENSG00000188992|Q6XZB0-4|LIPI	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.2879638671875	2	477.779619	953.544686	2.0133	0.00096191	-0.57064	-0.00027264	1.4426	0.00068927	477.77931939599625	134.36	0.41237	134.36	134.15	134.56	0					12	8	2	0	0	0	0.028476	1	15657	15657		37.028	24.822	1	83737			30312	8523	24903	24929	33566	33566					0.06605501233900668
LIHHKEMY	8	Oxidation (M)	_LIHHKEM(Oxidation (M))Y_		LIHHKEM(1)Y		LIHHKEM(80)Y	0	0	1			REV__ENSG00000163424|ENST00000295622|TEX55	REV__ENSG00000163424|ENST00000295622|TEX55	MULTI-MSMS	OvCa99_classI_Rep5	1	543.77392578125	2	543.773677	1085.5328	-0.35968	-0.00019558	-2.6085	-0.0014184	-2.9681	-0.001614	543.7722957032288	61.223	1.063	61.223	60.602	61.665	0					47	24	3	0	0	0	0.47599	1	5381	5381		79.939	13.51	1	2886400	+		30313	20835	24904	24930	33567	33567		487			-0.006544835716113084
LIHILLPMV	9	Unmodified	_LIHILLPMV_					0	0	0		ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.2908935546875	2	524.833006	1047.65146	-0.33363	-0.0001751	3.4559	0.0018138	3.1223	0.0016387	524.8346587038365	59.581	1.2299	56.189	55.805	57.035	-3.392					43	24	3	0	0	0	0.027462	1	3987	3987		29.842	3.1486	1	47186			30314	5232	24905	24931	33568	33568					0.12953915404045802
LIHKGGIVV	9	Unmodified	_LIHKGGIVV_					0	0	0		ADRB2|p.N352Mfs*91|1|0.42|ENSG00000169252|chr5:148827882-148827882|G/-|frameshift_variant	ADRB2|p.N352Mfs*91|1|0.42|ENSG00000169252|chr5:148827882-148827882|G/-|frameshift_variant	ADRB2|p.N352Mfs*91|1|0.42|ENSG00000169252|chr5:148827882-148827882|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	469.2532043457031	2	468.30547	934.596387	-1.3213	-0.00061875	0.33382	0.00015633	-0.98744	-0.00046243	468.30554710034494	85.576	1.1015	84.086	83.801	84.903	-1.4906					50	21	3	0	0	0	0.027462	1	7437	7437		18.324	0	1	79599			30315	43	24906	24932	33569	33569					0.12647244927802603
LIHKPLVVE	9	Unmodified	_LIHKPLVVE_					0	0	0			REV__ENSG00000256235|ENST00000526627|SMIM3	REV__ENSG00000256235|ENST00000526627|SMIM3	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.3060913085938	2	524.331685	1046.64882	1.3513	0.00070852	1.2207	0.00064006	2.572	0.0013486	524.33234112984	113.8	0.40229	113.8	113.61	114.01	0					13	8	2	0	0	0	0.027462	1	12966	12966		12.207	0	1	92717	+		30316	23536	24907	24933	33570	33570					0.1273578327075029
LIHLGCYFSSG	11	Unmodified	_LIHLGCYFSSG_					0	0	0		nc|ENSG00000135226|Q9BY64-2|UGT2B28;ENSG00000135226|ENST00000335568|UGT2B28	nc|ENSG00000135226|Q9BY64-2|UGT2B28	nc|ENSG00000135226|Q9BY64-2|UGT2B28	MULTI-SECPEP	OvCa99_classI_Rep5	1	599.3765869140625	2	598.792066	1195.56958	-0.14618	-8.7533E-05	-2.0743	-0.0012421	-2.2205	-0.0013296	598.7906261354423	69.545	0.32401	69.545	69.347	69.672	0					13	7	3	0	0	0	0.02601	1	6631	6631		29.15	3.0862	1	364860			30317	4359	24908	24934	33571	33571					-0.020382317457233512
LIHLLHLDN	9	Unmodified	_LIHLLHLDN_					0	0	0		ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	MULTI-SECPEP	OvCa9_classI_Rep2	2	543.3480224609375	2	544.316566	1086.61858	-0.99124	-0.00053955	2.7369	0.0014897	1.7456	0.00095018	544.3185161763329	63.974	0.78905	61.246	60.965	61.754	-2.7284					39	14	3	0	0	0	0.027462	1	4914	4914		18.324	6.8134	1	44351			30318	4807	24909	24935	33572	33572					0.07873424605554646
LIHLLHLDN	9	Unmodified	_LIHLLHLDN_					0	0	0		ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	544.316566	1086.61858	-0.40304	-0.00021938	2.8052	0.0015269	2.4022	0.0013076	544.3180525967499	64.941	0.67725	61.456	61.163	61.84	-3.4854	0.10492	2.4984E-05	NaN	25.45	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56065			30319	4807	24909	24935							0.07873424605554646
LIHLLLKESA	10	Unmodified	_LIHLLLKESA_					0	0	0			REV__MYH13|p.N751Lfs*37|1|0.1|ENSG00000006788|chr17:10332146-10332147|-/GAAGTATGTGCAG|frameshift_variant	REV__MYH13|p.N751Lfs*37|1|0.1|ENSG00000006788|chr17:10332146-10332147|-/GAAGTATGTGCAG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	568.853515625	2	568.855524	1135.69649	-7.0365	-0.0040027	3.4991	0.0019905	-3.5374	-0.0020123	568.857375140279	161.4	1.8223	160.03	159.69	161.51	-1.3692					107	37	5	0	0	0	0.76627	1	14001	14001		23.042	3.939	1	827460	+		30320	28687	24910	24936	33573	33573					0.1340743747093711
LIHLQDSTC	9	Unmodified	_LIHLQDSTC_					0	0	0			REV__nc|ENSG00000136603|P12757-3|SKIL	REV__nc|ENSG00000136603|P12757-3|SKIL	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.280517578125	2	515.255317	1028.49608	-0.20116	-0.00010365	-1.3586	-0.00070001	-1.5597	-0.00080366	515.2542835530408	73.585	0.39181	73.585	73.4	73.792	0					13	9	2	0	0	0	0.027461	1	7229	7229		49.442	3.4896	1	660150	+		30321	19394	24911	24937	33574	33574					-0.01702780188156794
LIHLQDSTC	9	Unmodified	_LIHLQDSTC_					0	0	0			REV__nc|ENSG00000136603|P12757-3|SKIL	REV__nc|ENSG00000136603|P12757-3|SKIL	MULTI-MATCH	OvCa9_classI_Rep3	3		2	515.255317	1028.49608	-0.24199	-0.00012469	-6.5233	-0.0033612	-6.7653	-0.0034858	515.2520002593621	76.305	0.67786	73.933	73.67	74.348	-2.3715	0.17423	-0.0033451	NaN	40.778	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14661	+		30322	19394	24911	24937							-0.01702780188156794
LIHRNLLSH	9	Unmodified	_LIHRNLLSH_					0	0	0			REV__ZNF669|p.H380Lfs*2|1|0.06|ENSG00000188295|chr1:247100630-247100631|-/A|frameshift_variant	REV__ZNF669|p.H380Lfs*2|1|0.06|ENSG00000188295|chr1:247100630-247100631|-/A|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.7688598632812	2	551.827632	1101.64071	-0.44532	-0.00024574	0.34649	0.0001912	-0.098833	-5.4539E-05	551.8273327077375	29.783	0.39936	29.783	29.536	29.935	0					13	7	3	0	0	0	0.027462	1	1078	1078		26.693	4.733	1	81640	+		30323	22703	24912	24938	33575	33575					0.09395649073985624
LIHRVRYR	8	Unmodified	_LIHRVRYR_					0	0	0		ENSG00000234828|ENST00000636793|IQCM	ENSG00000234828|ENST00000636793|IQCM	ENSG00000234828|ENST00000636793|IQCM	MULTI-SECPEP	OvCa9_classI_Rep3	3	556.322509765625	2	556.843616	1111.67268	1.0112	0.00056308	1.0662	0.00059372	2.0774	0.0011568	556.8441046512546	126	1.0928	124.93	124.67	125.76	-1.0654					33	20	3	0	0	0	0.028476	1	9906	9906		25.45	0	1	40162			30324	9302	24913	24939	33576	33576					0.12131061547779609
LIHSSGIL	8	Unmodified	_LIHSSGIL_					0	0	0			REV__nc|ENSG00000076944|Q15833-2|STXBP2	REV__nc|ENSG00000076944|Q15833-2|STXBP2	MULTI-MSMS	OvCa9_classI_Rep2	2	420.25262451171875	2	420.252903	838.491253	0.41101	0.00017273	-0.075014	-3.1525E-05	0.336	0.0001412	420.2527341495351	108.37	2.424	108.15	107.78	110.2	-0.22498					119	48	4	0	0	0	0.68312	1	10183	10183		46.766	2.2354	1	477420	+		30325	17000	24914	24940	33577	33577					0.06554703731376321
LIHVPKDLP	9	Unmodified	_LIHVPKDLP_					0	0	0		nc|ENSG00000174130|Q9Y2C9-2|TLR6;ENSG00000174130|ENST00000508254|TLR6	nc|ENSG00000174130|Q9Y2C9-2|TLR6	nc|ENSG00000174130|Q9Y2C9-2|TLR6	MULTI-MSMS	OvCa9_classI_Rep2	2	516.3126831054688	2	516.316035	1030.61752	-4.2539	-0.0021964	0.14413	7.4418E-05	-4.1098	-0.002122	516.3160035152533	156.4	1.1562	156.18	155.89	157.05	-0.22696					77	28	5	0	0	0	0.6653	1	15957	15957		24.203	2.2429	1	397210			30326	7439	24915	24941	33578	33578					0.10343210236646883
LIHYKLARP	9	Unmodified	_LIHYKLARP_					0	0	0			REV__ENST00000496433.5_1_2:3193107-3197993:-|nuORF	REV__ENST00000496433.5_1_2:3193107-3197993:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	555.841064453125	2	555.842751	1109.67095	0.44243	0.00024592	-4.3727	-0.0024305	-3.9303	-0.0021846	555.840193227491	67.597	0.94734	64.709	64.441	65.388	-2.8873					41	18	3	0	0	0	0.65476	1	2883	2883		25.45	4.5032	1	119210	+		30327	16590	24916	24942	33579	33579					0.12050007739162538
LIHYQSLLV	9	Unmodified	_LIHYQSLLV_					0	0	0			REV__tr|A0A553SSQ2|A0A553SSQ2_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_03500PE=4SV=1	REV__tr|A0A553SSQ2|A0A553SSQ2_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_03500PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	543.3217163085938	2	543.321317	1084.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.364	1	95.364	94.864	95.864	0								0	0	0	0.17192	1	10409	10409		45.952	1.5748	1		+		30328	30862	24917	24943	33580	33580					0.08915192891072365
LIIAPPQFRIG	11	Unmodified	_LIIAPPQFRIG_					0	0	0			REV__ENSG00000174007|ENST00000409690|CEP19	REV__ENSG00000174007|ENST00000409690|CEP19	MULTI-SECPEP	OvCa9_classI_Rep4_	4	409.2482604980469	3	408.920286	1223.73903	1.2846	0.00052529	3.7356	0.0015276	5.0202	0.0020529	408.9220584645651	60.949	0.69671	57.519	57.294	57.991	-3.43					19	13	2	0	0	0	0.025487	1	4136	4136		38.754	6.0031	1	55357	+		30329	21811	24918	24944	33581	33581					0.13610832599169953
LIIDGPLLR	9	Unmodified	_LIIDGPLLR_					0	0	0			REV__nc|ENSG00000072201|Q8TBB1-2|LNX1	REV__nc|ENSG00000072201|Q8TBB1-2|LNX1	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.3214416503906	2	505.32386	1008.63317	2.9213	0.0014762	-3.278	-0.0016565	-0.35672	-0.00018026	505.32217137829366	133.94	1.5796	132.42	132.05	133.63	-1.5257					92	31	4	0	0	0	0.31747	1	12937	12937		60.972	0	1	340380	+		30330	16914	24919	24945	33582	33582					0.12919496753704607
LIIEFVFTN	9	Unmodified	_LIIEFVFTN_					0	0	0			REV__tr|A0A7D6VQS4|A0A7D6VQS4_9CLOTAminoacidpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22470PE=4SV=1	REV__tr|A0A7D6VQS4|A0A7D6VQS4_9CLOTAminoacidpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22470PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	549.3052978515625	2	548.307875	1094.6012	-0.068198	-3.7393E-05	-3.1121	-0.0017064	-3.1803	-0.0017438	548.306367250628	119.49	0.74509	118.46	117.78	118.53	-1.0271					18	14	2	0	0	0	0.027462	1	9000	9000		34.173	0	1	25508	+		30331	31355	24920	24946	33583	33583					0.05768084279907271
LIIEGQWH	8	Unmodified	_LIIEGQWH_					0	0	0		WDFY3|p.Q3037Rfs*34|1|0.06|ENSG00000163625|chr4:84691725-84691725|T/-|frameshift_variant;WDFY3|p.S3365Qfs*9|1|0.07|ENSG00000163625|chr4:84678973-84678974|-/G|frameshift_variant;nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	WDFY3|p.Q3037Rfs*34|1|0.06|ENSG00000163625|chr4:84691725-84691725|T/-|frameshift_variant	WDFY3|p.Q3037Rfs*34|1|0.06|ENSG00000163625|chr4:84691725-84691725|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.26885986328125	2	498.269084	994.523616	3.122	0.0015556	0.81139	0.00040429	3.9334	0.0019599	498.26927182682834	133.82	1.8743	132.29	131.95	133.82	-1.5257					76	37	3	0	0	0	0.50674	1	12927	12927		76.847	2.33	1	130770			30332	36302	24921	24947	33584	33584					0.026134911343774547
LIIFDKERG	9	Unmodified	_LIIFDKERG_					0	0	0			REV__ENSG00000005007|ENST00000262803|UPF1	REV__ENSG00000005007|ENST00000262803|UPF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.8162841796875	2	545.816399	1089.61824	-0.6294	-0.00034354	0.30745	0.00016781	-0.32195	-0.00017573	545.8164323464933	121.64	1.1791	120.29	119.9	121.08	-1.3479					58	22	3	0	0	0	0.44294	1	11479	11479		47.916	1.9636	1	245670	+		30333	16388	24922	24948	33585	33585					0.07702004885709357
LIIFLIIAW	9	Unmodified	_LIIFLIIAW_					0	0	0			REV__nc|ENSG00000135636|O75923-3|DYSF	REV__nc|ENSG00000135636|O75923-3|DYSF	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.2598876953125	2	551.357171	1100.69979	-0.37094	-0.00020452	-3.3361	-0.0018394	-3.7071	-0.0020439	551.3552289143084	68.579	0.4471	65.959	65.819	66.266	-2.6203					14	8	3	0	0	0	0.027462	1	5401	5401		21.702	0	1	14955	+		30334	28870	24923	24949	33586	33586					0.1534673231560646
LIIGGLDKID	10	Unmodified	_LIIGGLDKID_					0	0	0		ENSG00000198742|ENST00000361368|SMURF1;nc|ENSG00000198742|Q9HCE7|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	ENSG00000198742|ENST00000361368|SMURF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.8181762695312	2	528.818607	1055.62266	-0.58431	-0.00030899	-0.14688	-7.7671E-05	-0.73119	-0.00038667	528.8184384605206	115.69	2.5492	114.29	113.92	116.47	-1.3977					103	49	4	0	0	0	0.75313	1	10865	10865		24.519	0.31644	1	813440			30335	8863	24924	24950	33587	33587					0.09707469308591499
LIIGIVKYID	10	Unmodified	_LIIGIVKYID_					0	0	0		tr|A0A7D6VPZ1|A0A7D6VPZ1_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00805PE=4SV=1	tr|A0A7D6VPZ1|A0A7D6VPZ1_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00805PE=4SV=1	tr|A0A7D6VPZ1|A0A7D6VPZ1_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00805PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	573.7767333984375	2	573.860275	1145.706	-1.351	-0.00077526	-1.2363	-0.00070946	-2.5873	-0.0014847	573.8595935132518	54.835	0.9226	51.588	51.285	52.207	-3.2474					36	17	3	0	0	0	0.027174	1	3394	3394		9.7057	0	1	43225			30336	34810	24925	24951	33588	33588					0.13897205756461517
LIIGNGTEKK	10	Unmodified	_LIIGNGTEKK_					0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3007202148438	2	536.821681	1071.62881	0.024245	1.3015E-05	-0.98606	-0.00052934	-0.96182	-0.00051632	536.820680600629	31.004	0.29267	31.004	30.831	31.124	0					7	5	2	0	0	0	0.027088	1	1248	1248		26.693	6.2111	1	70995	+		30337	22589	24926	24952	33589	33589					0.09585987540140195
LIIGQERAI	9	Unmodified	_LIIGQERAI_					0	0	0			REV__tr|A0A7D6ZIJ2|A0A7D6ZIJ2_9CLOTAdenosylcobinamide-GDPribazoletransferaseOS=ClostridiumintestinaleOX=36845GN=cobSPE=3SV=1	REV__tr|A0A7D6ZIJ2|A0A7D6ZIJ2_9CLOTAdenosylcobinamide-GDPribazoletransferaseOS=ClostridiumintestinaleOX=36845GN=cobSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.8124084472656	2	506.811116	1011.60768	0.31561	0.00015995	-1.485	-0.00075259	-1.1694	-0.00059264	506.81045586251577	89.749	2.4253	87.174	86.704	89.129	-2.575					167	47	5	0	0	0	0.34496	1	7752	7752		57.811	4.4598	1	8441000	+		30338	32059	24927	24953	33590	33590					0.10234022231270501
LIIGVEVVPH	10	Unmodified	_LIIGVEVVPH_					0	0	0		tr|A0A553SR44|A0A553SR44_NIACINa+/H+antiporterNhaCOS=NialliacirculansOX=1397GN=CEQ21_00265PE=3SV=1	tr|A0A553SR44|A0A553SR44_NIACINa+/H+antiporterNhaCOS=NialliacirculansOX=1397GN=CEQ21_00265PE=3SV=1	tr|A0A553SR44|A0A553SR44_NIACINa+/H+antiporterNhaCOS=NialliacirculansOX=1397GN=CEQ21_00265PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	538.326904296875	2	538.329142	1074.64373	-5.6218	-0.0030264	1.9414	0.0010451	-3.6804	-0.0019813	538.3300395836094	158.87	1.4268	157.61	157.3	158.73	-1.267					79	27	5	0	0	0	0.80532	1	13756	13756		18.324	1.8513	1	528870			30339	34228	24928	24954	33591	33591					0.10939479408125408
LIIIGSIFMI	10	Unmodified	_LIIIGSIFMI_					0	0	0		tr|A0A7D6VR17|A0A7D6VR17_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=celBPE=4SV=1	tr|A0A7D6VR17|A0A7D6VR17_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=celBPE=4SV=1	tr|A0A7D6VR17|A0A7D6VR17_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=celBPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	560.3120727539062	2	560.345946	1118.67734	0.89148	0.00049954	2.1344	0.001196	3.0259	0.0016955	560.3472221763345	83.27	0.82782	80.607	80.29	81.118	-2.6629					24	16	2	0	0	0	0.026768	1	6884	6884		50.025	9.2464	1	39913			30340	34884	24929	24955	33592	33592					0.1227476485569241
LIIIGSIFMI	10	Unmodified	_LIIIGSIFMI_					0	0	0		tr|A0A7D6VR17|A0A7D6VR17_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=celBPE=4SV=1	tr|A0A7D6VR17|A0A7D6VR17_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=celBPE=4SV=1	tr|A0A7D6VR17|A0A7D6VR17_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=celBPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	560.345946	1118.67734	0.88433	0.00049553	2.0952	0.0011741	2.9796	0.0016696	560.3471054818646	81.876	1.092	80.227	79.869	80.961	-1.6485	-0.25863	-0.00029635	NaN	31.955	35	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42169			30341	34884	24929	24955							0.1227476485569241
LIIKKYKS	8	Unmodified	_LIIKKYKS_					0	0	0			REV__tr|A0A553SHY4|A0A553SHY4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_13805PE=4SV=1	REV__tr|A0A553SHY4|A0A553SHY4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_13805PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	496.8298645019531	2	496.828778	991.643003	1.4547	0.00072276	-0.073364	-3.6449E-05	1.3814	0.00068631	496.82868474743657	148.53	2.5161	148.53	148.18	150.69	0					110	50	4	0	0	0	0.73626	1	17480	17480		33.516	8.0654	1	2754700	+		30342	29854	24930	24956	33593	33593					0.14684684759083666
LIILMYRV	8	Unmodified	_LIILMYRV_					0	0	0			REV__ENST00000599328.1_1_19:53744649-53744913:-|nuORF	REV__ENST00000599328.1_1_19:53744649-53744913:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.84564208984375	2	510.817356	1019.62016	1.7464	0.00089208	1.1667	0.00059597	2.9131	0.0014881	510.8180313771376	125.18	0.42879	125.18	125.02	125.45	0					16	11	2	0	0	0	0.028476	1	14478	14478		35.201	0	1	127800	+		30343	28020	24931	24957	33594	33594					0.11113342369958445
LIILNNSI	8	Unmodified	_LIILNNSI_					0	0	0			REV__tr|A0A7D6VRR9|A0A7D6VRR9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01945PE=4SV=1	REV__tr|A0A7D6VRR9|A0A7D6VRR9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01945PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.59869384765625	2	450.28166	898.548768	0.60674	0.0002732	-0.79193	-0.00035659	-0.18519	-8.3389E-05	450.28121444874193	75.837	1.4289	72.898	72.692	74.121	-2.9389					38	29	2	0	0	0	0.028476	1	5978	5978		37.159	0	1	85447	+		30344	31439	24932	24958	33595	33595					0.09543545936958253
LIILPGKGIKE	11	Unmodified	_LIILPGKGIKE_					0	0	0		ENST00000395881.7_1_20:55052062-55052167:+|nuORF	ENST00000395881.7_1_20:55052062-55052167:+|nuORF	ENST00000395881.7_1_20:55052062-55052167:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	591.3223876953125	2	590.886824	1179.7591	0.57038	0.00033703	-3.3521	-0.0019807	-2.7817	-0.0016437	590.8846678730808	42.203	0.44448	39.494	39.226	39.67	-2.7097					15	8	2	0	0	0	0.025759	1	2262	2262		35.152	0	1	7387.3			30345	11305	24933	24959	33596	33596					0.17640583539150612
LIINDRIDI	9	Unmodified	_LIINDRIDI_					0	0	0		tr|A0A7D6VPK5|A0A7D6VPK5_9CLOTThiamine-phosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=thiEPE=3SV=1	tr|A0A7D6VPK5|A0A7D6VPK5_9CLOTThiamine-phosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=thiEPE=3SV=1	tr|A0A7D6VPK5|A0A7D6VPK5_9CLOTThiamine-phosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=thiEPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	543.80908203125	2	542.821681	1083.62881	0.23894	0.0001297	-1.5068	-0.00081791	-1.2678	-0.00068821	542.8210802251995	114.51	0.24686	113.46	113.35	113.6	-1.055					6	4	2	0	0	0	0.027279	1	8455	8455		60.972	15.02	1	34851			30346	34777	24934	24960	33597	33597					0.09033987540146882
LIINHPYVY	9	Unmodified	_LIINHPYVY_					0	0	0			REV__tr|A0A7D6W3Y7|A0A7D6W3Y7_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11740PE=4SV=1	REV__tr|A0A7D6W3Y7|A0A7D6W3Y7_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11740PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.31201171875	2	566.313492	1130.61243	0.045578	2.5812E-05	-0.14808	-8.3858E-05	-0.1025	-5.8046E-05	566.3130820555424	120.51	2.062	119.16	118.77	120.83	-1.3444					89	39	3	0	0	0	0.58665	1	11346	11346		33.516	0	1	93610	+		30347	31927	24935	24961	33598	33598					0.05234906374039383
LIINHPYVY	9	Unmodified	_LIINHPYVY_					0	0	0			REV__tr|A0A7D6W3Y7|A0A7D6W3Y7_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11740PE=4SV=1	REV__tr|A0A7D6W3Y7|A0A7D6W3Y7_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11740PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	566.313492	1130.61243	-1.6796	-0.0009512	1.3871	0.00078553	-0.29254	-0.00016567	566.3139846423256	119.26	1.3812	119.09	118.61	119.99	-0.17138	-0.06453	0.0017965	NaN	33.516	65	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55769	+		30348	31927	24935	24961							0.05234906374039383
LIINHPYVY	9	Unmodified	_LIINHPYVY_					0	0	0			REV__tr|A0A7D6W3Y7|A0A7D6W3Y7_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11740PE=4SV=1	REV__tr|A0A7D6W3Y7|A0A7D6W3Y7_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11740PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	566.313492	1130.61243	0.95158	0.00053889	-1.4797	-0.00083795	-0.52809	-0.00029906	566.3125638012127	120.23	1.9198	119.21	118.77	120.69	-1.0271	0.054435	-0.0014505	NaN	33.516	78	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80460	+		30349	31927	24935	24961							0.05234906374039383
LIINHPYVY	9	Unmodified	_LIINHPYVY_					0	0	0			REV__tr|A0A7D6W3Y7|A0A7D6W3Y7_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11740PE=4SV=1	REV__tr|A0A7D6W3Y7|A0A7D6W3Y7_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11740PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	566.313492	1130.61243	0.045578	2.5812E-05	-0.14808	-8.3858E-05	-0.1025	-5.8046E-05	566.3130820555424	120.51	2.062	119.16	118.77	120.83	-1.3444	0.010095	5.7689E-05	NaN	33.516	89	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93610	+		30350	31927	24935	24961							0.05234906374039383
LIIPKAGLAI	10	Unmodified	_LIIPKAGLAI_					0	0	0		tr|A0A553SU47|A0A553SU47_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06345PE=3SV=1	tr|A0A553SU47|A0A553SU47_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06345PE=3SV=1	tr|A0A553SU47|A0A553SU47_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06345PE=3SV=1	MSMS	OvCa9_classI_Rep3	3	504.84344482421875	2	504.844428	1007.6743	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.6	1	133.47	132.97	133.97	-1.1226								0	0	0	0.14342	1	10854	10854		51.335	0	1				30351	34569	24936	24962	33599	33599					0.17077257793164335
LIIQRPIWLF	10	Unmodified	_LIIQRPIWLF_					0	0	0			REV__L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|352|3|anti-sense	REV__L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|352|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.2565002441406	3	433.604298	1297.79106	1.4214	0.00061633	0.97253	0.00042169	2.3939	0.001038	433.6047099059525	37.736	0.59875	34.843	34.541	35.14	-2.8925					16	11	2	0	0	0	0.027298	1	1409	1409		22.58	5.8623	1	22487	+		30352	28372	24937	24963	33600	33600					0.15407996012913827
LIISVTKAV	9	Unmodified	_LIISVTKAV_					0	0	0		tr|A0A7D6VRR4|A0A7D6VRR4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07955PE=4SV=1	tr|A0A7D6VRR4|A0A7D6VRR4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07955PE=4SV=1	tr|A0A7D6VRR4|A0A7D6VRR4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07955PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.3135070800781	2	472.312961	942.611368	-1.2664	-0.00059814	0.93465	0.00044145	-0.33175	-0.00015669	472.31322128573623	107.79	1.7939	105.91	105.38	107.17	-1.8784					71	35	3	0	0	0	0.16562	1	9845	9845		82.241	7.9855	1	193910			30353	34951	24938	24964	33601	33601					0.13776692005149016
LIIVMLMEEK	10	Unmodified	_LIIVMLMEEK_					0	0	0		tr|A0A553SP68|A0A553SP68_NIACILipoproteinsignalpeptidaseOS=NialliacirculansOX=1397GN=lspAPE=3SV=1	tr|A0A553SP68|A0A553SP68_NIACILipoproteinsignalpeptidaseOS=NialliacirculansOX=1397GN=lspAPE=3SV=1	tr|A0A553SP68|A0A553SP68_NIACILipoproteinsignalpeptidaseOS=NialliacirculansOX=1397GN=lspAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.21783447265625	3	406.899394	1217.67635	0.92503	0.00037639	0.27179	0.00011059	1.1968	0.00048699	407.2339542870703	56.158	0.6094	56.158	55.888	56.498	0					22	14	2	0	0	0	0.026849	1	4622	4622		18.531	3.8374	1	500710			30354	34008	24939	24965	33602	33602					0.07622182424461243
LIIVNMYI	8	Oxidation (M)	_LIIVNM(Oxidation (M))YI_		LIIVNM(1)YI		LIIVNM(57)YI	0	0	1		ENST00000424326.5_1_2:167262092-167297919:-|nuORF;ENSG00000136546|ENST00000643258|SCN7A	ENST00000424326.5_1_2:167262092-167297919:-|nuORF	ENST00000424326.5_1_2:167262092-167297919:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.78857421875	2	497.785721	993.55689	0.34776	0.00017311	3.1176	0.0015519	3.4654	0.001725	497.787060805859	38.004	1.5381	35.112	34.891	36.429	-2.8925					70	30	4	0	0	0	0.63104	1	1457	1457		57.453	10.686	1	293390			30355	4498	24940	24966	33603	33603		145			0.05985356862072422
LIIYPGEF	8	Unmodified	_LIIYPGEF_					0	0	0		ENST00000539921.5_1_11:62622368-62622703:-|nuORF;ENST00000537925.5_1_11:62622368-62622948:-|nuORF;ENST00000540725.5_1_11:62622368-62622964:-|nuORF	ENST00000539921.5_1_11:62622368-62622703:-|nuORF	ENST00000539921.5_1_11:62622368-62622703:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	476.2640380859375	2	476.262936	950.51132	1.059	0.00050434	0.80816	0.0003849	1.8671	0.00088924	476.26317187557686	157.12	1.161	157.12	156.85	158.01	0					51	22	4	0	0	0	0.71055	1	18447	18447		41.208	0	1	703630			30356	13414	24941	24967	33604	33604					0.03408454671330219
LIKAFFEVL	9	Unmodified	_LIKAFFEVL_					0	0	0		ENSG00000146197|ENST00000274938|SCUBE3;nc|ENSG00000146197|Q8IX30-2|SCUBE3	ENSG00000146197|ENST00000274938|SCUBE3	ENSG00000146197|ENST00000274938|SCUBE3	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.330322265625	2	540.328611	1078.64267	0.34656	0.00018726	2.5593	0.0013829	2.9059	0.0015701	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.64427	1	13922	13922		26.693	1.1189	1	342200			30357	5271	24942	24968	33605	33605					0.1064926503922834
LIKAGLNGGGL	11	Unmodified	_LIKAGLNGGGL_					0	0	0		tr|A0A553SSY9|A0A553SSY9_NIACIAlpha/betafoldhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_04085PE=4SV=1	tr|A0A553SSY9|A0A553SSY9_NIACIAlpha/betafoldhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_04085PE=4SV=1	tr|A0A553SSY9|A0A553SSY9_NIACIAlpha/betafoldhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_04085PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	506.8092346191406	2	506.811116	1011.60768	-1.1259	-0.00057063	0.32757	0.00016601	-0.79835	-0.00040461	506.81130069607957	99.678	3.3722	98.848	98.219	101.59	-0.83051					157	66	4	0	0	0	0.56722	1	9155	9155		47.657	3.5405	1	2351400			30358	34437	24943	24969	33606	33606					0.10234022231293238
LIKALKNL	8	Unmodified	_LIKALKNL_					0	0	0			REV__nc|ENSG00000083520|Q9Y2L1-2|DIS3	REV__nc|ENSG00000083520|Q9Y2L1-2|DIS3	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.7444763183594	2	456.81567	911.616788	0.32285	0.00014748	0.076389	3.4895E-05	0.39923	0.00018238	456.81559126813306	70.743	0.31204	70.743	70.565	70.877	0					12	7	2	0	0	0	0.028476	1	6809	6809		33.516	0	1	418480	+		30359	17104	24944	24970	33607	33607					0.15744415587607818
LIKALTFLTSD	11	Unmodified	_LIKALTFLTSD_					0	0	0			REV__ENST00000498636.1_1_X:55035677-55046849:-|nuORF	REV__ENST00000498636.1_1_X:55035677-55046849:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	611.3556518554688	2	611.358096	1220.70164	-3.7398	-0.0022864	0.47754	0.00029195	-3.2623	-0.0019944	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.71498	2	15242	15242;15335		24.519	1.4767	1	331570	+		30360	20574	24945	24971	33608;33609	33608					0.10011696542892423
LIKALTFLTSD	11	Unmodified	_LIKALTFLTSD_					0	0	0			REV__ENST00000498636.1_1_X:55035677-55046849:-|nuORF	REV__ENST00000498636.1_1_X:55035677-55046849:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3555297851562	2	611.358096	1220.70164	-3.1571	-0.0019301	-0.12375	-7.5658E-05	-3.2809	-0.0020058	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.7046	1	12877	12877		28.081	0.19925	1	666990	+		30361	20574	24945	24971	33610	33610					0.10011696542892423
LIKALTFLTSD	11	Unmodified	_LIKALTFLTSD_					0	0	0			REV__ENST00000498636.1_1_X:55035677-55046849:-|nuORF	REV__ENST00000498636.1_1_X:55035677-55046849:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3536987304688	2	611.358096	1220.70164	-2.725	-0.001666	-0.73961	-0.00045217	-3.4646	-0.0021181	611.3575283211214	150.83	4.6872	149.39	148.02	152.71	-1.4344					404	109	6	0	0	0	0.69808	2	14989	14977;14989		30.318	4.6509	1	435030	+		30362	20574	24945	24971	33611;33612	33612					0.10011696542892423
LIKASAPVGEE	11	Unmodified	_LIKASAPVGEE_					0	0	0			REV__chr10:13161606-13164128|403|17.79|0.63|4.82|+|2|MCM10,MCM10|1	REV__chr10:13161606-13164128|403|17.79|0.63|4.82|+|2|MCM10,MCM10|1	MULTI-MSMS	OvCa99_classI_Rep5	1	557.3132934570312	2	557.311146	1112.60774	2.6415	0.0014722	-2.9898	-0.0016663	-0.34827	-0.0001941	557.3093954369082	113.18	0.8215	113.18	112.79	113.61	0					74	19	5	0	0	0	0.21979	1	12950	12950		77.318	3.0625	1	8672400	+		30363	15845	24946	24972	33613	33613					0.05593977440616982
LIKCAPGDRGV	11	Unmodified	_LIKCAPGDRGV_					0	0	0			REV__ENST00000601438.2_1_19:47724101-47724386:-|nuORF	REV__ENST00000601438.2_1_19:47724101-47724386:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	564.8097534179688	2	564.813333	1127.61211	-3.7232	-0.0021029	-1.27	-0.00071733	-4.9932	-0.0028202	564.8125164297064	146.26	1.3933	145.3	144.9	146.29	-0.95946					62	27	3	0	0	0	0.71191	1	12291	12291		25.574	0	1	156470	+		30364	28036	24947	24973	33614	33614					0.053411633825362514
LIKDLNKQGH	10	Unmodified	_LIKDLNKQGH_					0	0	0		tr|A0A553SG61|A0A553SG61_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10285PE=3SV=1	tr|A0A553SG61|A0A553SG61_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10285PE=3SV=1	tr|A0A553SG61|A0A553SG61_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10285PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	583.3358764648438	2	583.33803	1164.66151	0.47641	0.00027791	-4.1061	-0.0023953	-3.6297	-0.0021174	583.3354161510537	140.18	1.0569	140.18	139.92	140.98	0					55	21	4	0	0	0	0.20801	1	16388	16388		93.195	2.8256	1	432070			30365	33123	24948	24974	33615	33615					0.08576194662964554
LIKEGKSIILI	11	Unmodified	_LIKEGKSIILI_					0	0	0		tr|A0A553SNV4|A0A553SNV4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_25170PE=4SV=1	tr|A0A553SNV4|A0A553SNV4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_25170PE=4SV=1	tr|A0A553SNV4|A0A553SNV4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_25170PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	409.6083679199219	3	409.607596	1225.80096	0.6889	0.00028218	0.24905	0.00010201	0.93795	0.00038419	409.60766459120623	104.29	12.102	103.72	103.28	115.38	-0.57639					699	244	5	0	0	0	0.50761	7	9645	9645;9688;9725;9803;9833;9894;10307		53.089	3.5925	1	1628000			30366	33966	24949	24975	33616;33617;33618;33619;33620;33621;33622	33616					0.19709139227688866
LIKEGKSIILI	11	Unmodified	_LIKEGKSIILI_					0	0	0		tr|A0A553SNV4|A0A553SNV4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_25170PE=4SV=1	tr|A0A553SNV4|A0A553SNV4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_25170PE=4SV=1	tr|A0A553SNV4|A0A553SNV4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_25170PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	409.6076354980469	3	409.607596	1225.80096	1.1396	0.00046679	-0.24169	-9.9E-05	0.89792	0.00036779	409.6074659919173	107.95	5.8573	106.76	106.27	112.13	-1.1978					409	114	4	0	0	0	0.6112	2	7721	7721;7972		43.651	8.4988	1	1037400			30367	33966	24949	24975	33623;33624	33623					0.19709139227688866
LIKEGKSIILI	11	Unmodified	_LIKEGKSIILI_					0	0	0		tr|A0A553SNV4|A0A553SNV4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_25170PE=4SV=1	tr|A0A553SNV4|A0A553SNV4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_25170PE=4SV=1	tr|A0A553SNV4|A0A553SNV4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_25170PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	409.60797119140625	3	409.607596	1225.80096	0.55097	0.00022568	0.25775	0.00010558	0.80871	0.00033125	409.60762934156605	108.64	8.1164	106.92	106.42	114.53	-1.7256					461	158	5	0	0	0	0.59615	2	10220	10198;10220		45.022	3.5956	1	863570			30368	33966	24949	24975	33625;33626	33626					0.19709139227688866
LIKELEKKIL	10	Unmodified	_LIKELEKKIL_					0	0	0		tr|A0A7D6ZSE6|A0A7D6ZSE6_9CLOTMethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metHPE=3SV=1	tr|A0A7D6ZSE6|A0A7D6ZSE6_9CLOTMethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metHPE=3SV=1	tr|A0A7D6ZSE6|A0A7D6ZSE6_9CLOTMethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metHPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	409.6080627441406	3	409.607596	1225.80096	0.6889	0.00028218	0.24905	0.00010201	0.93795	0.00038419	409.60766459120623	104.29	12.102	103.72	103.28	115.38	-0.57639					699	244	5	0	0	0	0.67987	1	9864	9864		32.751	0	1	1628000			30369	35736	24950	24976	33627	33627					0.19709139227666128
LIKELEKKIL	10	Unmodified	_LIKELEKKIL_					0	0	0		tr|A0A7D6ZSE6|A0A7D6ZSE6_9CLOTMethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metHPE=3SV=1	tr|A0A7D6ZSE6|A0A7D6ZSE6_9CLOTMethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metHPE=3SV=1	tr|A0A7D6ZSE6|A0A7D6ZSE6_9CLOTMethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metHPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	409.60797119140625	3	409.607596	1225.80096	1.1396	0.00046679	-0.24169	-9.9E-05	0.89792	0.00036779	409.6074659919173	107.95	5.8573	106.76	106.27	112.13	-1.1978					409	114	4	0	0	0	0.45822	2	7956	7819;7956		60.118	15.096	1	1037400			30370	35736	24950	24976	33628;33629	33629					0.19709139227666128
LIKELEKKIL	10	Unmodified	_LIKELEKKIL_					0	0	0		tr|A0A7D6ZSE6|A0A7D6ZSE6_9CLOTMethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metHPE=3SV=1	tr|A0A7D6ZSE6|A0A7D6ZSE6_9CLOTMethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metHPE=3SV=1	tr|A0A7D6ZSE6|A0A7D6ZSE6_9CLOTMethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metHPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	409.60821533203125	3	409.607596	1225.80096	0.55097	0.00022568	0.25775	0.00010558	0.80871	0.00033125	409.60762934156605	108.64	8.1164	106.92	106.42	114.53	-1.7256					461	158	5	0	0	0	0.6349	2	10139	10139;10164		37.812	1.3648	1	863570			30371	35736	24950	24976	33630;33631	33630					0.19709139227666128
LIKELREIQ	9	Unmodified	_LIKELREIQ_					0	0	0			REV__ENSG00000135976|ENST00000420699|ANKRD36;REV__ENST00000575193.1_1_2:89102295-89104913:+|nuORF	REV__ENSG00000135976|ENST00000420699|ANKRD36	MULTI-SECPEP	OvCa9_classI_Rep3	3	572.3175659179688	2	571.350606	1140.68666	-1.0737	-0.00061348	1.3824	0.00078985	0.30868	0.00017637	571.8527834783878	81.879	0.24915	79.583	79.385	79.634	-2.2963					5	4	2	0	0	0	0.027453	1	4567	4567		54.776	13.998	1	8476.3	+		30372	19345;27770	24951	24977	33632	33632					0.12194249465574103
LIKGALPV	8	Unmodified	_LIKGALPV_					0	0	0		ENST00000428175.2_22:24381698-24384231:-|nuORF	ENST00000428175.2_22:24381698-24384231:-|nuORF	ENST00000428175.2_22:24381698-24384231:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	405.77752685546875	2	405.776014	809.537475	3.5288	0.0014319	-0.67622	-0.00027439	2.8526	0.0011575	405.77552964093894	87.691	0.92119	87.691	87.463	88.384	0					39	21	3	0	0	0	0.69415	1	9325	9325		44.531	0	1	983470			30373	11770	24952	24978	33633	33633					0.12508768633460932
LIKGALVP	8	Unmodified	_LIKGALVP_					0	0	0		ENSG00000277161|ENST00000614443|PIGW	ENSG00000277161|ENST00000614443|PIGW	ENSG00000277161|ENST00000614443|PIGW	MULTI-MSMS	OvCa99_classI_Rep5	1	405.7770690917969	2	405.776014	809.537475	3.5288	0.0014319	-0.67622	-0.00027439	2.8526	0.0011575	405.77552964093894	87.691	0.92119	87.691	87.463	88.384	0					39	21	3	0	0	0	0.64377	1	9295	9295		54.765	0	1	983470			30374	9582	24953	24979	33634	33634					0.12508768633460932
LIKGPIEPS	9	Unmodified	_LIKGPIEPS_					0	0	0			REV__ENST00000315274.6_1_11:102668199-102668872:-|nuORF	REV__ENST00000315274.6_1_11:102668199-102668872:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.8218688964844	2	477.286943	952.559333	-0.4836	-0.00023082	0.44426	0.00021204	-0.039341	-1.8777E-05	477.28690823459067	81.51	0.63009	78.8	78.641	79.271	-2.7106					17	12	2	0	0	0	0.027462	1	6746	6746		21.96	0.25755	1	35016	+		30375	24396	24954	24980	33635	33635					0.08115528591383736
LIKGPLSKV	9	Unmodified	_LIKGPLSKV_					0	0	0		ENSG00000160994|ENST00000292574|CCDC105	ENSG00000160994|ENST00000292574|CCDC105	ENSG00000160994|ENST00000292574|CCDC105	MULTI-MSMS	OvCa99_classI_Rep5	1	477.8214416503906	2	477.820953	953.627353	1.1425	0.00054592	0.58727	0.00028061	1.7298	0.00082653	477.8210598571918	131.51	0.79417	131.51	131.25	132.04	0					34	16	3	0	0	0	0.46356	1	15288	15288		45.972	0.020292	1	401890			30376	6112	24955	24981	33636	33636					0.14868398242049352
LIKHGVIISST	11	Unmodified	_LIKHGVIISST_					0	0	0		ENSG00000143278|ENST00000367412|F13B	ENSG00000143278|ENST00000367412|F13B	ENSG00000143278|ENST00000367412|F13B	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3563232421875	2	584.358431	1166.70231	-1.7162	-0.0010029	-1.68	-0.00098173	-3.3962	-0.0019846	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.72473	1	14270	14270		19.104	0.84144	1	833330			30377	5027	24956	24982	33637	33637					0.1256253598260173
LIKHQALL	8	Unmodified	_LIKHQALL_					0	0	0			REV__nc|ENSG00000160460|Q9H254-2|SPTBN4	REV__nc|ENSG00000160460|Q9H254-2|SPTBN4	MULTI-SECPEP	OvCa99_classI_Rep5	1	469.2541198730469	2	468.30547	934.596387	2.5104	0.0011756	-0.34804	-0.00016299	2.1624	0.0010126	468.30514807199046	84.676	0.65868	84.676	84.388	85.046	0					33	15	3	0	0	0	0.028476	1	8855	8855		33.516	5.2613	1	1110400	+		30378	20661	24957	24983	33638	33638					0.12647244927802603
LIKHTNLDP	9	Unmodified	_LIKHTNLDP_					0	0	0		ENST00000596769.1_1_19:53510963-53514048:+|nuORF	ENST00000596769.1_1_19:53510963-53514048:+|nuORF	ENST00000596769.1_1_19:53510963-53514048:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.7846069335938	2	525.800749	1049.58694	-1.3219	-0.00069507	-0.039082	-2.055E-05	-1.361	-0.00071562	525.8008547946549	101.88	0.57743	100.36	100.11	100.69	-1.5211					14	10	2	0	0	0	0.027462	1	6977	6977		16.473	0	1	12589			30379	14186	24958	24984	33639	33639					0.06413431851615314
LIKKELEKIL	10	Unmodified	_LIKKELEKIL_					0	0	0			REV__tr|A0A7D6ZSE6|A0A7D6ZSE6_9CLOTMethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metHPE=3SV=1	REV__tr|A0A7D6ZSE6|A0A7D6ZSE6_9CLOTMethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metHPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	409.60833740234375	3	409.607596	1225.80096	0.6889	0.00028218	0.24905	0.00010201	0.93795	0.00038419	409.60766459120623	104.29	12.102	103.72	103.28	115.38	-0.57639					699	244	5	0	0	0	0.58067	1	10318	10318		44.377	1.5129	1	1628000	+		30380	32182	24959	24985	33640	33640					0.19709139227666128
LIKKELEKIL	10	Unmodified	_LIKKELEKIL_					0	0	0			REV__tr|A0A7D6ZSE6|A0A7D6ZSE6_9CLOTMethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metHPE=3SV=1	REV__tr|A0A7D6ZSE6|A0A7D6ZSE6_9CLOTMethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metHPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	409.607666015625	3	409.607596	1225.80096	1.1396	0.00046679	-0.24169	-9.9E-05	0.89792	0.00036779	409.6074659919173	107.95	5.8573	106.76	106.27	112.13	-1.1978					409	114	4	0	0	0	0.53807	5	7740	7740;7776;7789;7946;7952		49.536	1.5765	1	1037400	+		30381	32182	24959	24985	33641;33642;33643;33644;33645	33641					0.19709139227666128
LIKKELEKIL	10	Unmodified	_LIKKELEKIL_					0	0	0			REV__tr|A0A7D6ZSE6|A0A7D6ZSE6_9CLOTMethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metHPE=3SV=1	REV__tr|A0A7D6ZSE6|A0A7D6ZSE6_9CLOTMethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metHPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	409.60791015625	3	409.607596	1225.80096	0.55097	0.00022568	0.25775	0.00010558	0.80871	0.00033125	409.60762934156605	108.64	8.1164	106.92	106.42	114.53	-1.7256					461	158	5	0	0	0	0.53807	4	10113	10017;10089;10113;10232		49.536	2.5251	1	863570	+		30382	32182	24959	24985	33646;33647;33648;33649	33648					0.19709139227666128
LIKKKPCLL	9	Unmodified	_LIKKKPCLL_					0	0	0			REV__ENST00000562430.5_1_16:24581081-24581117:+|nuORF	REV__ENST00000562430.5_1_16:24581081-24581117:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	528.357177734375	2	528.354105	1054.69366	-0.89156	-0.00047106	3.779	0.0019966	2.8874	0.0015256	528.3561270511026	50.179	2.5789	50.179	49.899	52.478	0					154	59	5	0	0	0	0.61208	1	3856	3856		30.504	2.6214	1	20953000	+		30383	27648	24960	24986	33650	33650					0.16849890812432022
LIKKLPPVL	9	Unmodified	_LIKKLPPVL_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-SECPEP	OvCa9_classI_Rep3	3	510.80810546875	2	510.862621	1019.71069	-0.50482	-0.00025789	-2.6793	-0.0013688	-3.1841	-0.0016267	510.86027662038043	99.869	0.21057	98.184	98.038	98.248	-1.685					5	3	2	0	0	0	0.027462	1	6738	6738		18.324	5.3652	1	5613.3			30384	3653	24961	24987	33651	33651					0.2016213468988326
LIKKSPSDVKP	11	Unmodified	_LIKKSPSDVKP_					0	0	0		nc|ENSG00000170180|P02724-3|GYPA;nc|ENSG00000170180|P02724-2|GYPA;nc|ENSG00000170180|P02724|GYPA;ENSG00000170180|ENST00000641688|GYPA	nc|ENSG00000170180|P02724-3|GYPA	nc|ENSG00000170180|P02724-3|GYPA	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3695068359375	2	606.371538	1210.72852	-2.264	-0.0013728	-1.0272	-0.00062285	-3.2912	-0.0019957	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.72064	1	12387	12387		22.58	1.6327	1	205770			30385	7079	24962	24988	33652	33652					0.13158805154080255
LIKLEEEDED	10	Unmodified	_LIKLEEEDED_					0	0	0		ENSG00000162909|ENST00000295006|CAPN2;nc|ENSG00000162909|P17655-2|CAPN2;ENST00000480581.1_1_1:223939741-223945196:+|nuORF	ENSG00000162909|ENST00000295006|CAPN2	ENSG00000162909|ENST00000295006|CAPN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	411.5342712402344	3	411.534602	1231.58198	0.45697	0.00018806	-1.5986	-0.00065789	-1.1417	-0.00046984	411.53397364321063	20.468	0.79505	19.129	18.902	19.697	-1.3386					25	15	3	0	0	0	0.65849	1	60	60		35.152	5.982	1	43616			30386	6246	24963	24989	33653	33653					-0.024549615923206147
LIKLFTEHV	9	Unmodified	_LIKLFTEHV_					0	0	0		ENST00000481360.1_1_10:120454563-120467024:-|nuORF;ENST00000544392.5_1_10:120445642-120485819:-|nuORF;nc|ENSG00000151893|Q86Y37-4|CACUL1;nc|ENSG00000151893|Q86Y37-2|CACUL1;ENSG00000151893|ENST00000369151|CACUL1	ENST00000481360.1_1_10:120454563-120467024:-|nuORF	ENST00000481360.1_1_10:120454563-120467024:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	550.3264770507812	2	550.329142	1098.64373	-0.8792	-0.00048385	-4.099	-0.0022558	-4.9782	-0.0027397	550.3268942315257	85.56	1.6104	84.069	83.505	85.115	-1.4907					109	31	5	0	0	0	0.29717	1	7407	7407		63.306	1.1989	1	1857300			30387	5593	24964	24990	33654	33654					0.09835479408138781
LIKLFTEHV	9	Unmodified	_LIKLFTEHV_					0	0	0		ENST00000481360.1_1_10:120454563-120467024:-|nuORF;ENST00000544392.5_1_10:120445642-120485819:-|nuORF;nc|ENSG00000151893|Q86Y37-4|CACUL1;nc|ENSG00000151893|Q86Y37-2|CACUL1;ENSG00000151893|ENST00000369151|CACUL1	ENST00000481360.1_1_10:120454563-120467024:-|nuORF	ENST00000481360.1_1_10:120454563-120467024:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	550.3273315429688	2	550.329142	1098.64373	-1.5659	-0.00086175	-2.871	-0.00158	-4.4368	-0.0024417	550.3275336090328	86.284	1.4089	84.064	83.686	85.095	-2.2204					106	27	5	0	0	0	0.22961	1	5141	5141		71.296	9.6044	1	3899600			30388	5593	24964	24990	33655	33655					0.09835479408138781
LIKLLAQQVGE	11	Unmodified	_LIKLLAQQVGE_					0	0	0			REV__tr|A0A553SK77|A0A553SK77_NIACIATP-dependentClpproteaseATP-bindingsubunitClpXOS=NialliacirculansOX=1397GN=clpXPE=3SV=1	REV__tr|A0A553SK77|A0A553SK77_NIACIATP-dependentClpproteaseATP-bindingsubunitClpXOS=NialliacirculansOX=1397GN=clpXPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3693237304688	2	606.371538	1210.72852	-0.26856	-0.00016285	-2.8049	-0.0017008	-3.0734	-0.0018636	606.369699493104	145.24	3.8933	143.8	141.64	145.53	-1.4357					226	74	4	0	0	0	0.71191	1	14201	14201		25.574	1.0549	1	336140	+		30389	30088	24965	24991	33656	33656					0.13158805154057518
LIKLSSRAVI	10	Unmodified	_LIKLSSRAVI_					0	0	0		ENST00000463701.1_1_7:142459574-142460868:+|nuORF;ENSG00000204983|ENST00000311737|PRSS1;CON__P07477	ENST00000463701.1_1_7:142459574-142460868:+|nuORF	ENST00000463701.1_1_7:142459574-142460868:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	550.3259887695312	2	550.363516	1098.71248	-1.0458	-0.00057559	-2.4682	-0.0013584	-3.514	-0.001934	550.361917906085	85.449	0.29576	83.959	83.801	84.097	-1.4906					8	5	2	0	0	0	0.02663	1	7401	7401		42.864	0.46813	1	5504.3		+	30390	624	24966	24992	33657	33657					0.16707143707844807
LIKPRHTL	8	Unmodified	_LIKPRHTL_					0	0	0			REV__nc|ENSG00000105383|P20138-3|CD33	REV__nc|ENSG00000105383|P20138-3|CD33	MULTI-MSMS	OvCa9_classI_Rep2	2	489.3140563964844	2	489.316369	976.618185	-2.9034	-0.0014207	-1.3918	-0.00068104	-4.2952	-0.0021017	489.3155696010777	150.8	1.5265	150.57	150.17	151.7	-0.22696					77	30	4	0	0	0	0.75915	1	15298	15298		20.482	0	1	380370	+		30391	17718	24967	24993	33658	33658					0.12894049676367558
LIKPVTTT	8	Unmodified	_LIKPVTTT_					0	0	0			REV__ENSG00000161807|ENST00000541538|OR7G1	REV__ENSG00000161807|ENST00000541538|OR7G1	MULTI-MSMS	OvCa9_classI_Rep2	2	436.7751159667969	2	436.776211	871.537869	-1.3218	-0.00057733	-1.7819	-0.0007783	-3.1037	-0.0013556	436.77534043072393	144.04	2.131	143.81	143.2	145.33	-0.22697					119	42	4	0	0	0	0.73626	1	14433	14433		33.516	0	1	537180	+		30392	20709	24968	24994	33659	33659					0.0969614356264401
LIKQIPRIL	9	Unmodified	_LIKQIPRIL_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000498116.1_1_4:15732587-15732905:-|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENSG00000198755|ENST00000322203|RPL10A;ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENSG00000198755|ENST00000322203|RPL10A	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.2711791992188	2	547.376426	1092.7383	1.3338	0.00073007	1.1106	0.00060794	2.4444	0.001338	547.3769521871925	91.216	0.43913	91.216	90.976	91.415	0					21	10	3	0	0	0	0.027462	1	9812	9812		18.324	5.3652	1	803090			30393	8867;12397	24969	24995	33660	33660					0.19564037950112834
LIKQREEY	8	Unmodified	_LIKQREEY_					0	0	0		tr|A0A7D7A3N5|A0A7D7A3N5_9CLOTHD-GYPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22320PE=4SV=1	tr|A0A7D7A3N5|A0A7D7A3N5_9CLOTHD-GYPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22320PE=4SV=1	tr|A0A7D7A3N5|A0A7D7A3N5_9CLOTHD-GYPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22320PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.764892578125	2	539.798206	1077.58186	-1.3357	-0.000721	1.5538	0.00083873	0.21811	0.00011773	539.7988609867065	80.147	0.73524	77.437	76.979	77.714	-2.7106					18	13	2	0	0	0	0.028476	1	6494	6494		28.254	7.3073	1	32880			30394	36122	24970	24996	33661	33661					0.0461712798901317
LIKRDRLE	8	Unmodified	_LIKRDRLE_					0	0	0			REV__nc|ENSG00000087495|Q96KR7-3|PHACTR3	REV__nc|ENSG00000087495|Q96KR7-3|PHACTR3	MULTI-MSMS	OvCa99_classI_Rep5	1	521.82568359375	2	521.822015	1041.62948	1.9341	0.0010092	4.3612	0.0022757	6.2952	0.003285	521.8241413508126	121.68	0.698	121.68	121.38	122.08	0					42	14	4	0	0	0	0.67745	1	13988	13988		47.916	1.9636	1	1386900	+		30395	17168	24971	24997	33662	33662					0.11032826979840138
LIKRKGGG	8	Unmodified	_LIKRKGGG_					0	0	0		tr|A0A553STQ2|A0A553STQ2_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05600PE=3SV=1	tr|A0A553STQ2|A0A553STQ2_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05600PE=3SV=1	tr|A0A553STQ2|A0A553STQ2_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05600PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.76226806640625	2	414.774337	827.534121	0.85116	0.00035304	1.7837	0.00073983	2.6349	0.0010929	414.77522585857844	141.25	0.41779	139.79	139.56	139.97	-1.4627					10	7	2	0	0	0	0.028476	1	13771	13771		21.702	7.0382	1	17209			30396	34517	24972	24998	33663	33663					0.1134551857948054
LIKRNESY	8	Unmodified	_LIKRNESY_					0	0	0			REV__ENSG00000139151|ENST00000266505|PLCZ1	REV__ENSG00000139151|ENST00000266505|PLCZ1	MULTI-MSMS	OvCa99_classI_Rep5	1	511.7861022949219	2	511.785099	1021.55564	2.4601	0.001259	-0.83521	-0.00042745	1.6249	0.00083157	511.7845748098573	94.798	1.9028	94.798	94.475	96.378	0					94	44	4	0	0	0	0.37872	1	10330	10330		92.191	1.414	1	26268000	+		30397	19591	24973	24999	33664	33664					0.045728588175165896
LIKRVHLTE	9	Unmodified	_LIKRVHLTE_					0	0	0		TRIM9|p.R391K|1|0.07|ENSG00000100505|chr14:51009214-51009214|C/T|missense_variant	TRIM9|p.R391K|1|0.07|ENSG00000100505|chr14:51009214-51009214|C/T|missense_variant	TRIM9|p.R391K|1|0.07|ENSG00000100505|chr14:51009214-51009214|C/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.7667236328125	2	554.84549	1107.67643	0.34198	0.00018975	3.8093	0.0021136	4.1513	0.0023033	554.8475210029657	105.48	0.69968	105.48	105.18	105.88	0					34	15	3	0	0	0	0.027462	1	11843	11843		20.947	0	1	857730			30398	36280	24974	25000	33665	33665					0.12689686530984545
LIKTKTLL	8	Unmodified	_LIKTKTLL_					0	0	0			REV__nc|ENSG00000104763|Q13510-3|ASAH1	REV__nc|ENSG00000104763|Q13510-3|ASAH1	MULTI-SECPEP	OvCa9_classI_Rep2	2	465.2874755859375	2	465.323328	928.632104	0.37243	0.0001733	-1.7549	-0.00081662	-1.3825	-0.00064332	465.3231864858189	125.02	0.19685	124.79	124.66	124.86	-0.2359					5	3	2	0	0	0	0.028476	1	12171	12171		12.207	0.69583	1	15653	+		30399	17679	24975	25001	33666	33666					0.16493282384794838
LIKTKTLL	8	Unmodified	_LIKTKTLL_					0	0	0			REV__nc|ENSG00000104763|Q13510-3|ASAH1	REV__nc|ENSG00000104763|Q13510-3|ASAH1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	465.323328	928.632104	-2.5858	-0.0012032	-7.7375	-0.0036004	-10.323	-0.0048037	465.3197629309995	126.22	0.1487	124.8	124.68	124.83	-1.4143	0.0076636	-0.0031556	NaN	3.41	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7338.7	+		30400	17679	24975	25001							0.16493282384794838
LIKVLGILK	9	Unmodified	_LIKVLGILK_					0	0	0		ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4;nc|ENSG00000134744|Q5TAX3-2|TUT4	ENSG00000134744|ENST00000257177|TUT4	ENSG00000134744|ENST00000257177|TUT4	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.8223876953125	2	498.862621	995.710688	1.8319	0.00091385	-0.088162	-4.3981E-05	1.7437	0.00086986	498.86245254686133	110.32	0.40434	110.32	110.09	110.49	0					16	8	2	0	0	0	0.027462	1	12487	12487		11.511	0	1	201760			30401	4322	24976	25002	33667	33667					0.21266134689903993
LIKVLRLLL	9	Unmodified	_LIKVLRLLL_					0	0	0		ENST00000265192.8_1_5:138704483-138704675:+|nuORF	ENST00000265192.8_1_5:138704483-138704675:+|nuORF	ENST00000265192.8_1_5:138704483-138704675:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	540.8984985351562	2	540.896995	1079.77944	1.6967	0.00091776	0.29004	0.00015688	1.9868	0.0010746	540.8970489996714	119.98	0.65681	119.98	119.62	120.27	0					26	14	2	0	0	0	0.13154	1	13801	13801		88.643	22.84	1	672440			30402	9947	24977	25003	33668	33668					0.2427379898961135
LIKVNKLIP	9	Unmodified	_LIKVNKLIP_					0	0	0			REV__tr|A0A553STZ7|A0A553STZ7_NIACIMurR/RpiRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_05965PE=4SV=1	REV__tr|A0A553STZ7|A0A553STZ7_NIACIMurR/RpiRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_05965PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	519.3590087890625	2	519.357702	1036.70085	0.6418	0.00033333	1.2612	0.00065502	1.903	0.00098835	519.3582472082908	154.86	0.95905	154.86	154.57	155.53	0					40	18	3	0	0	0	0.59983	1	18165	18165		31.955	0	1	114940	+		30403	31028	24978	25004	33669	33669					0.1839694668451557
LIKVQGQT	8	Unmodified	_LIKVQGQT_					0	0	0			REV__ENSG00000178764|ENST00000314393|ZHX2	REV__ENSG00000178764|ENST00000314393|ZHX2	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.28094482421875	2	443.77146	885.528367	2.6943	0.0011956	-2.3389	-0.001038	0.35533	0.00015768	443.77092800373896	87.577	0.37455	87.577	87.42	87.794	0					10	8	2	0	0	0	0.028476	1	9301	9301		24.203	1.1603	1	106990	+		30404	22077	24979	25005	33670	33670					0.08102375277155716
LIKWIPQIL	9	Unmodified	_LIKWIPQIL_					0	0	0		ENST00000426688.1_1_1:81674334-81674790:+|nuORF	ENST00000426688.1_1_1:81674334-81674790:+|nuORF	ENST00000426688.1_1_1:81674334-81674790:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.296630859375	2	562.365527	1122.7165	2.0875	0.0011739	-3.2607	-0.0018337	-1.1733	-0.00065981	562.3636303702191	118.8	0.42773	118.8	118.67	119.1	0					18	8	3	0	0	0	0.027462	1	13660	13660		16.473	3.514	1	63578			30405	11744	24980	25006	33671	33671					0.16005233201553892
LIKYQSSR	8	Unmodified	_LIKYQSSR_					0	0	0		nc|ENSG00000160360|Q86YR5-2|GPSM1;nc|ENSG00000160360|Q86YR5-4|GPSM1;nc|ENSG00000160360|Q86YR5|GPSM1;ENSG00000160360|ENST00000440944|GPSM1	nc|ENSG00000160360|Q86YR5-2|GPSM1	nc|ENSG00000160360|Q86YR5-2|GPSM1	MULTI-MSMS	OvCa9_classI_Rep2	2	497.78778076171875	2	497.787641	993.56073	-1.6587	-0.00082566	1.4226	0.00070815	-0.23606	-0.00011751	497.78818191941025	38.201	0.9397	35.491	35.271	36.211	-2.7097					48	18	4	0	0	0	0.65582	1	1794	1794		52.299	0.96372	1	265770			30406	6061	24981	25007	33672	33672					0.06369162680141471
LIKYSLSTLDL	11	Unmodified	_LIKYSLSTLDL_					0	0	0			REV__PDE11A|p.D619Sfs*16|1|0.06|ENSG00000128655|chr2:177728087-177728106|GTGATCATGGCATCAACGTC/-|frameshift_variant	REV__PDE11A|p.D619Sfs*16|1|0.06|ENSG00000128655|chr2:177728087-177728106|GTGATCATGGCATCAACGTC/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3709106445312	2	633.371204	1264.72785	-4.8823	-0.0030923	1.8683	0.0011833	-3.0141	-0.001909	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.72466	1	13287	13287		19.997	0.89325	1	765700	+		30407	18866	24982	25008	33673	33673					0.10607965714393686
LILAAAVSK	9	Unmodified	_LILAAAVSK_					0	0	0		nc|ENSG00000159363|Q9NQ11-2|ATP13A2;nc|ENSG00000159363|Q9NQ11-3|ATP13A2;ENSG00000159363|ENST00000326735|ATP13A2;ENST00000466561.1_1_1:17313027-17318334:-|nuORF	nc|ENSG00000159363|Q9NQ11-2|ATP13A2	nc|ENSG00000159363|Q9NQ11-2|ATP13A2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	444.2646179199219	2	443.292028	884.569503	-0.0059924	-2.6564E-06	0.21658	9.6009E-05	0.21059	9.3352E-05	443.2920235371554	59.238	1.391	55.846	55.2	56.591	-3.392					60	27	3	0	0	0	0.027462	1	4024	4024		24.203	0	1	81410			30408	6007	24983	25009	33674	33674					0.12260136316604076
LILAIERIL	9	Unmodified	_LILAIERIL_					0	0	0			REV__ENSG00000196772|ENST00000641093|OR14A16	REV__ENSG00000196772|ENST00000641093|OR14A16	MULTI-MSMS	OvCa9_classI_Rep2	2	527.3544311523438	2	527.35516	1052.69577	-0.14415	-7.6019E-05	0.083086	4.3816E-05	-0.061065	-3.2203E-05	527.3549928566696	133.68	0.83745	133.46	133.11	133.95	-0.22697					42	16	3	0	0	0	0.42057	1	13229	13229		50.025	0.81375	1	97589	+		30409	22863	24984	25010	33675	33675					0.17152642821906738
LILAVMYGMT	10	Unmodified	_LILAVMYGMT_					0	0	0			REV__nc|ENSG00000139292|O75473-3|LGR5	REV__nc|ENSG00000139292|O75473-3|LGR5	MULTI-MSMS	OvCa9_classI_Rep3	3	556.2977905273438	2	556.298139	1110.58172	1.798	0.0010002	1.6991	0.00094522	3.4971	0.0019454	556.2988469938191	57.839	0.95665	54.712	54.157	55.114	-3.1264					33	24	2	0	0	0	0.85358	1	1756	1756		12.207	0.69583	1	17435	+		30410	15893	24985	25011	33676	33676					0.030856686731340233
LILAVMYGMT	10	Unmodified	_LILAVMYGMT_					0	0	0			REV__nc|ENSG00000139292|O75473-3|LGR5	REV__nc|ENSG00000139292|O75473-3|LGR5	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	556.298139	1110.58172	1.798	0.0010002	1.6991	0.00094522	3.4971	0.0019454	556.2988469938191	57.839	0.95665	54.712	54.157	55.114	-3.1264	-0.027805	-0.00016826	NaN	12.207	33	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17435	+		30411	15893	24985	25011							0.030856686731340233
LILAVMYGMT	10	Unmodified	_LILAVMYGMT_					0	0	0			REV__nc|ENSG00000139292|O75473-3|LGR5	REV__nc|ENSG00000139292|O75473-3|LGR5	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	556.298139	1110.58172	0.41132	0.00022882	2.2835	0.0012703	2.6948	0.0014991	556.299226628031	58.113	0.80398	54.768	54.393	55.197	-3.3449	0.027805	0.00048192	NaN	12.207	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84023	+		30412	15893	24985	25011							0.030856686731340233
LILAWINLC	9	Unmodified	_LILAWINLC_					0	0	0			REV__ENST00000505282.1_1_4:66959972-66960239:+|nuORF	REV__ENST00000505282.1_1_4:66959972-66960239:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.809814453125	2	529.806988	1057.59942	-1.6351	-0.00086631	3.3899	0.001796	1.7548	0.00092971	529.8085286457653	81.385	1.3592	78.674	78.298	79.657	-2.7106					77	27	4	0	0	0	0.30002	2	6680	6680;6692		62.978	5.1671	1	2054100	+		30413	19767	24986	25012	33677;33678	33677					0.07292751990280522
LILCGKGV	8	Unmodified	_LILCGKGV_					0	0	0			REV__ENSG00000100596|ENST00000216484|SPTLC2	REV__ENSG00000100596|ENST00000216484|SPTLC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	401.7381591796875	2	401.746399	801.478245	2.0818	0.00083636	3.2905	0.0013219	5.3723	0.0021583	401.74868414260163	64.232	0.29337	60.757	60.539	60.833	-3.475					8	5	2	0	0	0	0.028476	1	4537	4537		21.702	7.0382	1	7365.1	+		30414	17434	24987	25013	33679	33679					0.06956549347648888
LILCTAHTL	9	Unmodified	_LILCTAHTL_					0	0	0		ENSG00000127954|ENST00000380079|STEAP4;nc|ENSG00000127954|Q687X5-2|STEAP4	ENSG00000127954|ENST00000380079|STEAP4	ENSG00000127954|ENST00000380079|STEAP4	MULTI-SECPEP	OvCa9_classI_Rep3	3	491.80047607421875	2	492.78097	983.547388	0.19085	9.4048E-05	-2.9197	-0.0014388	-2.7289	-0.0013447	492.77932224771047	106.53	0.99452	105.26	104.96	105.95	-1.267					38	19	3	0	0	0	0.027462	1	7600	7600		40.573	13.777	1	43517			30415	3856	24988	25014	33680	33680					0.05495588576548016
LILDKISA	8	Unmodified	_LILDKISA_					0	0	0		tr|A0A553SRC4|A0A553SRC4_NIACIBeta-N-acetylhexosaminidaseOS=NialliacirculansOX=1397GN=CEQ21_00705PE=3SV=1	tr|A0A553SRC4|A0A553SRC4_NIACIBeta-N-acetylhexosaminidaseOS=NialliacirculansOX=1397GN=CEQ21_00705PE=3SV=1	tr|A0A553SRC4|A0A553SRC4_NIACIBeta-N-acetylhexosaminidaseOS=NialliacirculansOX=1397GN=CEQ21_00705PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.7749328613281	2	436.776211	871.537869	-0.44072	-0.00019249	-2.8293	-0.0012358	-3.27	-0.0014283	436.7748691455194	144.87	2.2884	143.44	143.04	145.33	-1.4357					111	43	5	0	0	0	0.73626	1	14247	14247		33.516	0	1	1417100			30416	34250	24989	25015	33681	33681					0.0969614356265538
LILDLSYLN	9	Unmodified	_LILDLSYLN_					0	0	0			REV__tr|A0A7D6VR77|A0A7D6VR77_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_18310PE=4SV=1	REV__tr|A0A7D6VR77|A0A7D6VR77_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_18310PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	532.30615234375	2	532.305332	1062.59611	3.1621	0.0016832	-1.0691	-0.00056908	2.0931	0.0011141	532.3046082532485	97.375	0.60347	97.375	97.135	97.738	0					33	13	3	0	0	0	0.14998	1	10700	10700		84.916	2.6105	1	855010	+		30417	31394	24990	25016	33682	33682					0.0673178041729443
LILDLSYLN	9	Unmodified	_LILDLSYLN_					0	0	0			REV__tr|A0A7D6VR77|A0A7D6VR77_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_18310PE=4SV=1	REV__tr|A0A7D6VR77|A0A7D6VR77_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_18310PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	532.305332	1062.59611	-1.4359	-0.00076431	1.8947	0.0010085	0.45881	0.00024423	532.3061827215311	98.603	2.0775	97.71	97.072	99.149	-0.89306	0.16727	0.00064505	NaN	84.916	84	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132030	+		30418	31394	24990	25016							0.0673178041729443
LILDRFNK	8	Unmodified	_LILDRFNK_					0	0	0		tr|A0A7D6W055|A0A7D6W055_9CLOTHDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22580PE=4SV=1	tr|A0A7D6W055|A0A7D6W055_9CLOTHDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22580PE=4SV=1	tr|A0A7D6W055|A0A7D6W055_9CLOTHDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22580PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	509.8040771484375	2	509.805834	1017.59712	-6.2934	-0.0032084	2.3889	0.0012179	-3.9045	-0.0019905	509.80678568012956	157.1	0.86105	155.93	155.45	156.31	-1.1707					26	16	2	0	0	0	0.75241	1	13555	13555		25.45	6.0902	1	41601			30419	35372	24991	25017	33683	33683					0.08902039576844345
LILDSPAVTE	10	Unmodified	_LILDSPAVTE_					0	0	0			REV__ENST00000488738.5_1_20:61594563-61595083:+|nuORF	REV__ENST00000488738.5_1_20:61594563-61595083:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.7784423828125	2	529.292422	1056.57029	-1.4429	-0.00076371	1.9985	0.0010578	0.55556	0.00029406	529.2930670630684	94.925	0.60131	92.457	92.16	92.761	-2.4685					17	11	2	0	0	0	0.026915	1	8345	8345		35.618	12.576	1	20021	+		30420	26627	24992	25018	33684	33684					0.0442688617499698
LILEKNDVHW	10	Unmodified	_LILEKNDVHW_					0	0	0		ENSG00000135605|ENST00000381501|TEC	ENSG00000135605|ENST00000381501|TEC	ENSG00000135605|ENST00000381501|TEC	MULTI-SECPEP	OvCa9_classI_Rep3	3	633.3687744140625	2	633.845687	1265.67682	-4.5076	-0.0028571	-4.4309	-0.0028085	-8.9385	-0.0056656	633.8427158374203	151.4	1.206	150.44	150.11	151.31	-0.95647					33	23	2	0	0	0	0.027056	1	12963	12963		20.947	2.6848	1	20607			30421	4392	24993	25019	33685	33685					0.05461061460187011
LILFGFNNLT	10	Unmodified	_LILFGFNNLT_					0	0	0			REV__ENST00000400943.3_1_1:240136137-240136869:+|nuORF	REV__ENST00000400943.3_1_1:240136137-240136869:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.804443359375	2	576.326599	1150.63865	1.6288	0.00093875	-3.6456	-0.0021011	-2.0168	-0.0011623	576.3242484996407	93.808	0.41542	93.808	93.549	93.964	0					17	9	2	0	0	0	0.026915	1	10156	10156		27.882	0	1	1036100	+		30422	25405	24994	25020	33686	33686					0.06935175545504535
LILFHTGII	9	Unmodified	_LILFHTGII_					0	0	0		ENSG00000180919|ENST00000316529|OR56B4	ENSG00000180919|ENST00000316529|OR56B4	ENSG00000180919|ENST00000316529|OR56B4	MULTI-MSMS	OvCa99_classI_Rep5	1	513.8201904296875	2	513.820953	1025.62735	1.4472	0.00074363	-3.2525	-0.0016712	-1.8053	-0.00092758	513.8191028899041	118.84	0.88754	118.84	118.58	119.47	0					49	18	3	0	0	0	0.32337	1	13644	13644		60.294	2.4827	1	1359900			30423	7900	24995	25021	33687	33687					0.11556398242055366
LILGAKRPGL	10	Unmodified	_LILGAKRPGL_					0	0	0			REV__ENSG00000152092|ENST00000361833|ASTN1	REV__ENSG00000152092|ENST00000361833|ASTN1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.3201293945312	2	519.345126	1036.6757	-0.075539	-3.9231E-05	2.8577	0.0014841	2.7822	0.0014449	519.3466847870023	105.64	0.2995	105.2	105.05	105.35	-0.43642					6	5	2	0	0	0	0.026519	1	9813	9813		76.847	16.553	1	5128.1	+		30424	20268	24996	25022	33688	33688					0.15882891881938122
LILGEELL	8	Unmodified	_LILGEELL_					0	0	0			REV__ENST00000548882.5_1_12:56231570-56231720:-|nuORF	REV__ENST00000548882.5_1_12:56231570-56231720:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	450.27435302734375	2	450.276044	898.537535	-0.13529	-6.0919E-05	-2.8912	-0.0013019	-3.0265	-0.0013628	450.27464677011136	147.54	1.7967	147.31	146.82	148.62	-0.22696					100	35	5	0	0	0	0.72922	3	14885	14885;14907;14920		37.028	0	1	344090	+		30425	27448	24997	25023	33689;33690;33691	33689					0.08420723842812095
LILGEELL	8	Unmodified	_LILGEELL_					0	0	0			REV__ENST00000548882.5_1_12:56231570-56231720:-|nuORF	REV__ENST00000548882.5_1_12:56231570-56231720:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	450.2738952636719	2	450.276044	898.537535	-3.7498	-0.0016884	0.58642	0.00026405	-3.1634	-0.0014244	450.27623858459356	147.83	1.7988	146.88	146.5	148.3	-0.95119					100	35	5	0	0	0	0.75991	1	12519	12519		21.702	0	1	751980	+		30426	27448	24997	25023	33692	33692					0.08420723842812095
LILGEELL	8	Unmodified	_LILGEELL_					0	0	0			REV__ENST00000548882.5_1_12:56231570-56231720:-|nuORF	REV__ENST00000548882.5_1_12:56231570-56231720:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.2742919921875	2	450.276044	898.537535	-1.3925	-0.00062703	-1.6106	-0.00072523	-3.0032	-0.0013523	450.2752805302911	148.27	1.3965	146.84	146.48	147.87	-1.435					87	28	5	0	0	0	0.72134	1	14625	14625		39.021	0	1	541000	+		30427	27448	24997	25023	33693	33693					0.08420723842812095
LILGLRNVC	9	Unmodified	_LILGLRNVC_					0	0	0			REV__ENST00000439129.5_2_22:42532414-42532645:+|nuORF	REV__ENST00000439129.5_2_22:42532414-42532645:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	500.7981262207031	2	500.802237	999.589921	-4.5773	-0.0022923	-3.1922	-0.0015987	-7.7695	-0.003891	500.8005489314557	149.34	2.1117	148.39	147.7	149.81	-0.9512					96	41	4	0	0	0	0.65476	1	12641	12641		25.45	0	1	278740	+		30428	25816	24998	25024	33694	33694					0.09010983704774844
LILGLTPFVF	10	Unmodified	_LILGLTPFVF_					0	0	0		nc|ENSG00000006576|Q8N3S3-7|PHTF2;nc|ENSG00000006576|Q8N3S3-4|PHTF2;nc|ENSG00000006576|Q8N3S3-3|PHTF2;nc|ENSG00000006576|Q8N3S3-2|PHTF2;ENSG00000006576|ENST00000416283|PHTF2	nc|ENSG00000006576|Q8N3S3-7|PHTF2	nc|ENSG00000006576|Q8N3S3-7|PHTF2	MULTI-MSMS	OvCa9_classI_Rep3	3	560.3402099609375	2	560.344261	1118.67397	-7.144	-0.0040031	0.027217	1.5251E-05	-7.1168	-0.0039878	560.3441648343594	161.4	2.0053	160.03	159.58	161.59	-1.3692					105	41	5	0	0	0	0.75594	1	14008	14008		24.203	3.2558	1	475740			30429	881	24999	25025	33695	33695					0.11937838073322382
LILGPRPTSH	10	Unmodified	_LILGPRPTSH_					0	0	0		ENST00000481959.1_1_3:49760761-49760899:-|nuORF	ENST00000481959.1_1_3:49760761-49760899:-|nuORF	ENST00000481959.1_1_3:49760761-49760899:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	545.822021484375	2	545.822015	1089.62948	-1.0728	-0.00058556	0.5676	0.00030981	-0.50521	-0.00027575	545.822343651499	84.091	2.1648	82.545	82.223	84.388	-1.5462					84	42	4	0	0	0	0.5675	1	7243	7243		45.972	5.1941	1	714100			30430	12560	25000	25026	33696	33696					0.08824826979844147
LILGSSSDI	9	Unmodified	_LILGSSSDI_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-SECPEP	OvCa99_classI_Rep5	1	453.7225646972656	2	452.752933	903.491313	1.5317	0.0006935	-1.0927	-0.00049471	0.43908	0.00019879	452.7521065876319	105.84	1.3171	105.84	105.4	106.72	0					38	29	2	0	0	0	0.027449	1	11891	11891		31.955	0	1	108790	+		30431	21079	25001	25027	33697	33697					0.035706589407254796
LILGVAINFK	10	Unmodified	_LILGVAINFK_					0	0	0			REV__DSEL|p.A1119Sfs*13|1|0.11|ENSG00000171451|chr18:67511285-67511286|-/A|frameshift_variant	REV__DSEL|p.A1119Sfs*13|1|0.11|ENSG00000171451|chr18:67511285-67511286|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	544.3472290039062	2	544.347335	1086.68012	0.25522	0.00013893	-0.24647	-0.00013416	0.0087488	4.7624E-06	544.3470145971799	130.64	2.2153	129.51	128.62	130.84	-1.1249					69	44	3	0	0	0	0.75594	1	10410	10410		24.203	0	1	117100	+		30432	16339	25002	25028	33698	33698					0.14024356304844332
LILGYLSTL	9	Unmodified	_LILGYLSTL_					0	0	0			REV__ENSG00000106819|ENST00000375544|ASPN	REV__ENSG00000106819|ENST00000375544|ASPN	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.7644958496094	2	496.804968	991.595384	3.4576	0.0017177	3.0252	0.0015029	6.4828	0.0032207	496.8068741243566	88.458	0.29627	88.458	88.298	88.595	0					9	6	2	0	0	0	0.027462	1	9406	9406		12.207	0	1	148260	+		30433	17827	25003	25029	33699	33699					0.09924985768248007
LILHKRTQ	8	Unmodified	_LILHKRTQ_					0	0	0			REV__ENST00000554844.1_1_14:21569329-21569694:+|nuORF	REV__ENST00000554844.1_1_14:21569329-21569694:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.263427734375	2	504.819276	1007.624	0.30372	0.00015332	-1.2169	-0.00061431	-0.91317	-0.00046099	504.81860552034345	72.704	0.38152	72.704	72.533	72.915	0					15	9	2	0	0	0	0.028476	1	7103	7103		37.159	0	1	431420	+		30434	27534	25004	25030	33700	33700					0.12049148188032177
LILHPMRLN	9	Unmodified	_LILHPMRLN_					0	0	0			REV__ENST00000489863.5_1_1:63955849-63988891:-|nuORF	REV__ENST00000489863.5_1_1:63955849-63988891:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8301391601562	2	553.828786	1105.64302	-0.8401	-0.00046527	2.9703	0.001645	2.1302	0.0011798	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.6959	1	14453	14453		19.36	1.0979	1	245610	+		30435	26646	25005	25031	33701	33701					0.09442361487458584
LILIHGTLL	9	Unmodified	_LILIHGTLL_					0	0	0			REV__ENSG00000187688|ENST00000338560|TRPV2	REV__ENSG00000187688|ENST00000338560|TRPV2	MULTI-MSMS	OvCa99_classI_Rep5	1	496.8286437988281	2	496.828778	991.643003	1.4547	0.00072276	-0.073364	-3.6449E-05	1.3814	0.00068631	496.82868474743657	148.53	2.5161	148.53	148.18	150.69	0					110	50	4	0	0	0	0.30002	1	17361	17361		62.978	8.2138	1	2754700	+		30436	22655	25006	25032	33702	33702					0.14684684759106403
LILIWPPK	8	Unmodified	_LILIWPPK_					0	0	0		tr|A0A553SHT2|A0A553SHT2_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_13545PE=4SV=1	tr|A0A553SHT2|A0A553SHT2_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_13545PE=4SV=1	tr|A0A553SHT2|A0A553SHT2_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_13545PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	490.3360595703125	2	490.320589	978.626624	0.33855	0.000166	2.7892	0.0013676	3.1277	0.0015336	490.3230951897552	135.4	1.0781	135.17	134.39	135.47	-0.22697					29	21	3	0	0	0	0.028476	1	13413	13413		31.579	0	1	44892			30437	33308	25007	25033	33703	33703					0.1364560359298821
LILKCCLLI	9	Carbamidomethyl (C)	_LILKCC(Carbamidomethyl (C))LLI_	LILKC(0.122)C(0.878)LLI		LILKC(-8.6)C(8.6)LLI		0	1	0		ENST00000418115.5_1_3:49397482-49397617:-|nuORF	ENST00000418115.5_1_3:49397482-49397617:-|nuORF	ENST00000418115.5_1_3:49397482-49397617:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	544.8263549804688	2	544.832149	1087.64974	1.9817	0.0010797	-2.1028	-0.0011457	-0.12106	-6.5959E-05	544.8307144076316	117.98	1.9688	117.98	117.27	119.24	0					84	41	4	0	0	0	0.17908	1	13462	13462		79.939	11.455	2	1251500			30438	11629	25008	25034	33704	33704	124				0.10942538323797635
LILKEINLS	9	Unmodified	_LILKEINLS_					0	0	0		tr|A0A7D7A3R9|A0A7D7A3R9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22625PE=4SV=1	tr|A0A7D7A3R9|A0A7D7A3R9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22625PE=4SV=1	tr|A0A7D7A3R9|A0A7D7A3R9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22625PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.8082275390625	2	521.828975	1041.6434	-1.5314	-0.00079915	1.145	0.00059748	-0.38647	-0.00020167	521.829280939888	120.19	0.73285	118.85	118.56	119.29	-1.3444					23	13	3	0	0	0	0.027462	1	11273	11273		15.642	8.9063	1	37016			30439	36127	25009	25035	33705	33705					0.12424059688282796
LILKKEDEL	9	Unmodified	_LILKKEDEL_					0	0	0		ENST00000525547.5_1_11:112014321-112020942:-|nuORF;nc|ENSG00000150782|Q14116-2|IL18;ENSG00000150782|ENST00000280357|IL18	ENST00000525547.5_1_11:112014321-112020942:-|nuORF	ENST00000525547.5_1_11:112014321-112020942:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.2817993164062	2	550.831714	1099.64888	-0.56873	-0.00031327	1.1267	0.00062065	0.55801	0.00030737	550.8323301055862	94.721	1.302	92.253	91.96	93.262	-2.4685					55	25	3	0	0	0	0.027462	1	8423	8423		32.812	0	1	162200			30440	5520	25010	25036	33706	33706					0.10303738480092761
LILKKPRSE	9	Unmodified	_LILKKPRSE_					0	0	0		ENST00000572438.1_1_17:4802033-4804946:-|nuORF;ENSG00000108556|ENST00000649488|CHRNE	ENST00000572438.1_1_17:4802033-4804946:-|nuORF	ENST00000572438.1_1_17:4802033-4804946:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.2903442382812	2	542.347866	1082.68118	-0.8962	-0.00048605	-0.43346	-0.00023509	-1.3297	-0.00072114	542.3474154436216	62.544	1.312	59.086	58.815	60.127	-3.4577					47	26	3	0	0	0	0.027411	1	4337	4337		64.207	0	1	179310			30441	2661	25011	25037	33707	33707					0.14314570673764138
LILKRVED	8	Unmodified	_LILKRVED_					0	0	0			REV__ENSG00000018625|ENST00000361216|ATP1A2	REV__ENSG00000018625|ENST00000361216|ATP1A2	MULTI-MSMS	OvCa99_classI_Rep5	1	493.3064270019531	2	493.305667	984.596781	2.7384	0.0013509	-0.21196	-0.00010456	2.5265	0.0012463	493.30536883089775	90.001	0.65748	90.001	89.763	90.421	0					28	15	3	0	0	0	0.35821	1	9625	9625		96.19	0	1	1444800	+		30442	16532	25012	25038	33708	33708					0.10386619857001733
LILKRWNN	8	Unmodified	_LILKRWNN_					0	0	0			REV__tr|A0A7D7A0Z0|A0A7D7A0Z0_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13245PE=4SV=1	REV__tr|A0A7D7A0Z0|A0A7D7A0Z0_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13245PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.2750244140625	2	528.819276	1055.624	1.4548	0.00076933	-0.49972	-0.00026426	0.95509	0.00050507	528.8186676720294	138.34	0.67297	138.34	138.06	138.74	0					25	13	4	0	0	0	0.028476	1	16188	16188		44.531	0	1	126610	+		30443	32463	25013	25039	33709	33709					0.09841148188024818
LILKWFRM	8	Unmodified	_LILKWFRM_					0	0	0			REV__ENST00000465952.5_1_13:31205167-31205455:+|nuORF	REV__ENST00000465952.5_1_13:31205167-31205455:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8297119140625	2	553.830798	1105.64704	-0.8401	-0.00046527	-0.66147	-0.00036634	-1.5016	-0.00083161	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.74679	2	14446	14446;14466		28.254	0.37203	1	245610	+		30444	26180	25014	25040	33710;33711	33710					0.09844450981154296
LILLPIARK	9	Unmodified	_LILLPIARK_					0	0	0			REV__tr|A0A7D6VZ87|A0A7D6VZ87_9CLOTDUF4367domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18655PE=4SV=1	REV__tr|A0A7D6VZ87|A0A7D6VZ87_9CLOTDUF4367domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18655PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.8114013671875	2	518.865695	1035.71684	1.8629	0.00096658	-0.84333	-0.00043757	1.0195	0.00052901	518.8646871842734	87.79	0.4884	86.359	86.04	86.528	-1.4311					12	9	2	0	0	0	0.027462	1	7642	7642		35.201	15.841	1	10379	+		30445	31833	25015	25041	33712	33712					0.20040652921420588
LILMLPAQQ	9	Unmodified	_LILMLPAQQ_					0	0	0		ENST00000603672.5_2_X:73500274-73501539:-|nuORF	ENST00000603672.5_2_X:73500274-73501539:-|nuORF	ENST00000603672.5_2_X:73500274-73501539:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.7700805664062	2	513.804445	1025.59434	1.7116	0.00087944	-2.7705	-0.0014235	-1.0588	-0.00054404	513.8030047597035	136.07	0.42426	136.07	135.83	136.25	0					13	8	2	0	0	0	0.027462	1	15860	15860		25.45	0	1	61012			30446	14255	25016	25042	33713	33713					0.08256448127667682
LILNFPGKLI	10	Unmodified	_LILNFPGKLI_					0	0	0		tr|A0A7D6VPQ1|A0A7D6VPQ1_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23830PE=3SV=1	tr|A0A7D6VPQ1|A0A7D6VPQ1_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23830PE=3SV=1	tr|A0A7D6VPQ1|A0A7D6VPQ1_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23830PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.326171875	2	564.362985	1126.71142	0.98931	0.00055833	1.0432	0.00058875	2.0325	0.0011471	564.3634532052586	103.02	0.15733	100.82	100.73	100.88	-2.1994					4	2	2	0	0	0	0.027117	1	9290	9290		10.866	0	1	6842.5			30447	34788	25017	25043	33714	33714					0.15312929338961112
LILNLIAEI	9	Unmodified	_LILNLIAEI_					0	0	0			REV__tr|A0A7D6ZFQ4|A0A7D6ZFQ4_9CLOTOligosaccharideflippasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18850PE=4SV=1	REV__tr|A0A7D6ZFQ4|A0A7D6ZFQ4_9CLOTOligosaccharideflippasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18850PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.30206298828125	2	506.326068	1010.63758	-0.88852	-0.00044988	-1.1359	-0.00057512	-2.0244	-0.001025	506.3241645576876	115.43	0.8884	114.38	114.11	115	-1.0414					43	17	4	0	0	0	0.027462	1	8555	8555		38.806	14.603	1	44564	+		30448	31979	25018	25044	33715	33715					0.13268961176606808
LILNRSLAPL	10	Unmodified	_LILNRSLAPL_					0	0	0			REV__chr6:41787718-41789232|401|32.65|0.0|21.64|+|1|None,TOMM6|1	REV__chr6:41787718-41789232|401|32.65|0.0|21.64|+|1|None,TOMM6|1	MULTI-MSMS	OvCa9_classI_Rep3	3	555.3523559570312	2	555.355691	1108.69683	-7.0233	-0.0039004	3.381	0.0018777	-3.6422	-0.0020227	555.3574443782504	158.85	1.8694	157.58	157.26	159.13	-1.267					85	36	5	0	0	0	0.76627	1	13733	13733		23.042	0	1	417810	+		30449	16079	25019	25045	33716	33716					0.14682857190791765
LILNSLSHI	9	Unmodified	_LILNSLSHI_					0	0	0		ENST00000454964.3_1_14:92562711-92572896:-|nuORF	ENST00000454964.3_1_14:92562711-92572896:-|nuORF	ENST00000454964.3_1_14:92562711-92572896:-|nuORF	MSMS	OvCa99_classI_Rep5	1	505.3082580566406	2	505.305667	1008.59678	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.983	1	77.983	77.483	78.483	0								0	0	0	0.13464	1	7886	7886		66.429	11.665	1				30450	12091	25020	25046	33717	33717					0.09282619856992369
LILNVLESL	9	Unmodified	_LILNVLESL_					0	0	0			REV__ENSG00000154511|ENST00000370310|DIPK1A	REV__ENSG00000154511|ENST00000370310|DIPK1A	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.725830078125	2	507.3157	1012.61685	1.265	0.00064174	0.08448	4.2858E-05	1.3495	0.0006846	507.3156289190851	119.39	0.30297	119.39	119.19	119.5	0					9	6	2	0	0	0	0.027462	1	13690	13690		45.952	3.5558	1	74128	+		30451	20386	25021	25047	33718	33718					0.11104370796954299
LILPCHKW	8	Unmodified	_LILPCHKW_					0	0	0			REV__ENST00000553142.5_1_12:58020024-58020282:-|nuORF	REV__ENST00000553142.5_1_12:58020024-58020282:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	505.2862548828125	2	505.286223	1008.55789	0.38886	0.00019649	1.8458	0.00093268	2.2347	0.0011292	505.28705002705914	30.208	1.1833	27.498	27.31	28.494	-2.7097					60	23	4	0	0	0	0.69415	1	828	828		44.531	2.0566	1	447770	+		30452	27505	25022	25048	33719	33719					0.05395616021621663
LILPDMLKN	9	Unmodified	_LILPDMLKN_					0	0	0		ENSG00000100028|ENST00000215829|SNRPD3;nc|ENSG00000286070|P62318-2|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	MULTI-MSMS	OvCa9_classI_Rep2	2	528.8082275390625	2	528.809728	1055.6049	-2.2616	-0.001196	-0.87723	-0.00046389	-3.1389	-0.0016599	528.8089774590135	143.19	0.88931	142.96	142.61	143.5	-0.22696					33	17	3	0	0	0	0.42057	1	14388	14388		50.025	9.4519	1	25849			30453	1995	25023	25049	33720	33720					0.07932430782102529
LILPGYIDF	9	Unmodified	_LILPGYIDF_					0	0	0		ENSG00000178035|ENST00000326739|IMPDH2;ENST00000485500.1_1_3:49066148-49066789:-|nuORF;ENST00000496837.1_1_3:49065635-49066789:-|nuORF	ENSG00000178035|ENST00000326739|IMPDH2	ENSG00000178035|ENST00000326739|IMPDH2	MULTI-MSMS	OvCa99_classI_Rep5	1	525.798828125	2	525.797143	1049.57973	0.12149	6.3881E-05	-0.17565	-9.2355E-05	-0.054153	-2.8474E-05	525.7969587591814	162.34	0.54027	162.34	162.02	162.56	0					29	10	4	0	0	0	0.25214	1	19021	19021		68.485	8.1907	1	892350			30454	7730	25024	25050	33721	33721					0.056926992511762364
LILPTQDRVL	10	Unmodified	_LILPTQDRVL_					0	0	0			REV__nc|ENSG00000122778|Q9HCM3-2|KIAA1549	REV__nc|ENSG00000122778|Q9HCM3-2|KIAA1549	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3572998046875	2	584.358431	1166.70231	-0.5033	-0.0002941	-2.654	-0.0015509	-3.1573	-0.001845	584.3567763295431	142.42	4.015	140.98	138.81	142.83	-1.4427					242	77	4	0	0	0	0.5675	1	13979	13979		45.972	1.5951	1	214670	+		30455	18613	25025	25051	33722	33722					0.1256253598260173
LILPTQDRVL	10	Unmodified	_LILPTQDRVL_					0	0	0			REV__nc|ENSG00000122778|Q9HCM3-2|KIAA1549	REV__nc|ENSG00000122778|Q9HCM3-2|KIAA1549	MULTI-MATCH	OvCa9_classI_Rep3	3		2	584.358431	1166.70231	-3.7589	-0.0021965	0.18637	0.00010891	-3.5725	-0.0020876	584.3584156975868	142.04	2.0745	141.03	139.85	141.92	-1.0106	0.026474	0.0023187	NaN	45.972	97	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43115	+		30456	18613	25025	25051							0.1256253598260173
LILQALGT	8	Unmodified	_LILQALGT_					0	0	0		ENSG00000059691|ENST00000263985|GATB;GATB|p.A251E|1|0.27|ENSG00000059691|chr4:151716020-151716020|G/T|missense_variant;ENST00000515564.5_1_4:152622580-152640660:-|nuORF;PET112-FAM160A1|1|fusion	ENSG00000059691|ENST00000263985|GATB;PET112-FAM160A1|1|fusion	ENSG00000059691|ENST00000263985|GATB	MULTI-MSMS	OvCa9_classI_Rep2	2	414.7615966796875	2	414.763104	827.511654	-0.47497	-0.000197	-2.6059	-0.0010808	-3.0808	-0.0012778	414.761930419043	140.08	2.1671	139.86	139.4	141.57	-0.22696					123	43	4	0	0	0	0.75915	1	14018	14018		20.482	1.1219	1	474850			30457	1255;15490	25026	25052	33723	33723					0.09099874391188223
LILQALGT	8	Unmodified	_LILQALGT_					0	0	0		ENSG00000059691|ENST00000263985|GATB;GATB|p.A251E|1|0.27|ENSG00000059691|chr4:151716020-151716020|G/T|missense_variant;ENST00000515564.5_1_4:152622580-152640660:-|nuORF;PET112-FAM160A1|1|fusion	ENSG00000059691|ENST00000263985|GATB;PET112-FAM160A1|1|fusion	ENSG00000059691|ENST00000263985|GATB	MULTI-MSMS	OvCa9_classI_Rep3	3	414.7616882324219	2	414.763104	827.511654	-1.3763	-0.00057084	-1.7682	-0.00073337	-3.1445	-0.0013042	414.7623056204016	140.83	3.4972	139.8	137.66	141.16	-1.0339					138	70	4	0	0	0	0.73288	2	11683	11615;11683		35.201	1.6851	1	1080700			30458	1255;15490	25026	25052	33724;33725	33725					0.09099874391188223
LILQALGT	8	Unmodified	_LILQALGT_					0	0	0		ENSG00000059691|ENST00000263985|GATB;GATB|p.A251E|1|0.27|ENSG00000059691|chr4:151716020-151716020|G/T|missense_variant;ENST00000515564.5_1_4:152622580-152640660:-|nuORF;PET112-FAM160A1|1|fusion	ENSG00000059691|ENST00000263985|GATB;PET112-FAM160A1|1|fusion	ENSG00000059691|ENST00000263985|GATB	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.76220703125	2	414.763104	827.511654	0.81	0.00033596	-4.0428	-0.0016768	-3.2328	-0.0013408	414.7613377091018	141.2	2.8207	139.74	138.79	141.61	-1.4627					131	54	4	0	0	0	0.73626	1	13866	13866		33.516	3.0119	1	1536400			30459	1255;15490	25026	25052	33726	33726					0.09099874391188223
LILQRAHLH	9	Unmodified	_LILQRAHLH_					0	0	0			REV__ENST00000530903.1_1_11:126073315-126075741:-|nuORF	REV__ENST00000530903.1_1_11:126073315-126075741:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.783203125	2	550.838	1099.66145	-1.129	-0.00062191	-2.5568	-0.0014084	-3.6858	-0.0020303	550.8367273711082	42.98	0.62992	39.973	39.801	40.431	-3.0074					14	11	2	0	0	0	0.027462	1	2030	2030		25.45	0	1	14208	+		30460	21098	25027	25053	33727	33727					0.1156023945366087
LILRDINN	8	Unmodified	_LILRDINN_					0	0	0			REV__EFTUD2|p.K259N|1|0.03|ENSG00000108883|chr17:44876026-44876026|C/A|missense_variant	REV__EFTUD2|p.K259N|1|0.03|ENSG00000108883|chr17:44876026-44876026|C/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.7887268066406	2	485.787641	969.56073	-2.4364	-0.0011836	1.4911	0.00072436	-0.94534	-0.00045924	485.78818782578804	88.256	2.2477	85.653	84.874	87.122	-2.6027					99	44	4	0	0	0	0.65062	1	7570	7570		53.351	0.41475	1	1024400	+		30461	16346	25028	25054	33728	33728					0.07473162680128098
LILRIAEGPK	10	Unmodified	_LILRIAEGPK_					0	0	0			REV__nc|ENSG807|P61550|ERVS71-1	REV__nc|ENSG807|P61550|ERVS71-1	MULTI-MSMS	OvCa9_classI_Rep2	2	555.3531494140625	2	555.355691	1108.69683	-4.1933	-0.0023288	0.44804	0.00024882	-3.7453	-0.00208	555.3557970844861	158.57	1.1439	158.34	158.06	159.2	-0.22696					59	23	4	0	0	0	0.7759	1	16115	16115		21.96	1.4781	1	239990	+		30462	29229	25029	25055	33729	33729					0.14682857190791765
LILRIVLLP	9	Unmodified	_LILRIVLLP_					0	0	0		tr|A0A7D7ACK8|A0A7D7ACK8_9CLOTReleasefactorglutaminemethyltransferaseOS=ClostridiumintestinaleOX=36845GN=prmCPE=3SV=1	tr|A0A7D7ACK8|A0A7D7ACK8_9CLOTReleasefactorglutaminemethyltransferaseOS=ClostridiumintestinaleOX=36845GN=prmCPE=3SV=1	tr|A0A7D7ACK8|A0A7D7ACK8_9CLOTReleasefactorglutaminemethyltransferaseOS=ClostridiumintestinaleOX=36845GN=prmCPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.2774658203125	2	525.375895	1048.73724	0.72979	0.00038342	0.96303	0.00050595	1.6928	0.00088937	525.376277025876	156.39	1.0065	156.39	156.09	157.1	0					30	19	2	0	0	0	0.027462	1	18375	18375		25.45	12.491	1	83908			30463	36230	25030	25056	33730	33730					0.21481823581211756
LILRKPGSL	9	Unmodified	_LILRKPGSL_					0	0	0		ENST00000504875.5_1_5:149433032-149433299:-|nuORF	ENST00000504875.5_1_5:149433032-149433299:-|nuORF	ENST00000504875.5_1_5:149433032-149433299:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	499.28717041015625	2	498.831852	995.649151	1.1164	0.0005569	-1.4017	-0.00069921	-0.28528	-0.00014231	498.8309827432953	90.955	1.2551	89.719	89.439	90.694	-1.2355					63	23	4	0	0	0	0.027462	1	8025	8025		27.882	5.9224	1	208070			30464	12881	25031	25057	33731	33731					0.15115202990614307
LILRKPGSL	9	Unmodified	_LILRKPGSL_					0	0	0		ENST00000504875.5_1_5:149433032-149433299:-|nuORF	ENST00000504875.5_1_5:149433032-149433299:-|nuORF	ENST00000504875.5_1_5:149433032-149433299:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	498.831852	995.649151	-1.4034	-0.00070006	0.44494	0.00022195	-0.95846	-0.00047811	498.8317036325239	92.114	1.4794	90.09	89.737	91.216	-2.0241	0.12506	0.0010195	NaN	27.882	60	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243430			30465	12881	25031	25057							0.15115202990614307
LILRKPGSL	9	Unmodified	_LILRKPGSL_					0	0	0		ENST00000504875.5_1_5:149433032-149433299:-|nuORF	ENST00000504875.5_1_5:149433032-149433299:-|nuORF	ENST00000504875.5_1_5:149433032-149433299:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	498.831852	995.649151	-1.129	-0.0005632	1.2154	0.00060629	0.086389	4.3093E-05	498.8321421944274	92.594	1.2566	90.086	89.755	91.012	-2.5072	0.12099	0.0017881	NaN	27.882	58	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217200			30466	12881	25031	25057							0.15115202990614307
LILRLLPLV	9	Unmodified	_LILRLLPLV_					0	0	0		tr|A0A553SID1|A0A553SID1_NIACINADHdehydrogenasesubunit1OS=NialliacirculansOX=1397GN=CEQ21_14610PE=4SV=1	tr|A0A553SID1|A0A553SID1_NIACINADHdehydrogenasesubunit1OS=NialliacirculansOX=1397GN=CEQ21_14610PE=4SV=1	tr|A0A553SID1|A0A553SID1_NIACINADHdehydrogenasesubunit1OS=NialliacirculansOX=1397GN=CEQ21_14610PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	525.3770751953125	2	525.375895	1048.73724	0.91206	0.00047917	-1.0421	-0.00054748	-0.13001	-6.8304E-05	525.3752295269967	150.06	1.8583	150.06	149.75	151.6	0					81	36	4	0	0	0	0.32337	1	17595	17595		60.294	7.9948	1	785340			30467	33368	25032	25058	33732	33732					0.21481823581211756
LILRRYPGGW	10	Unmodified	_LILRRYPGGW_					0	0	0		ENSG00000018625|ENST00000361216|ATP1A2	ENSG00000018625|ENST00000361216|ATP1A2	ENSG00000018625|ENST00000361216|ATP1A2	MULTI-MSMS	OvCa99_classI_Rep5	1	615.860107421875	2	615.858932	1229.70331	1.8688	0.0011509	-0.12675	-7.8062E-05	1.742	0.0010728	615.8586782375912	136.29	0.56528	136.29	136.07	136.63	0					24	11	3	0	0	0	0.56767	1	15896	15896		45.952	1.5748	1	180030			30468	1014	25033	25059	33733	33733					0.09764795142177718
LILRVQFVF	9	Unmodified	_LILRVQFVF_					0	0	0			REV__ENST00000511766.2_1_6:119215493-119222091:+|nuORF	REV__ENST00000511766.2_1_6:119215493-119222091:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.2916259765625	2	567.855327	1133.6961	1.5109	0.00085795	-0.48719	-0.00027665	1.0237	0.0005813	568.3555909098352	147.03	0.24255	147.03	146.91	147.16	0					6	4	2	0	0	0	0.027462	1	17193	17193		29.15	0	1	16315	+		30469	26964	25034	25060	33734	33734					0.1346006254175336
LILSFHTGPD	10	Unmodified	_LILSFHTGPD_					0	0	0			REV__ENSG00000178078|ENST00000594605|STAP2	REV__ENSG00000178078|ENST00000594605|STAP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.3200073242188	2	550.292756	1098.57096	2.2037	0.0012127	0.27958	0.00015385	2.4832	0.0013665	550.2928462059048	86.168	0.51957	86.168	85.912	86.431	0					22	12	2	0	0	0	0.026752	1	9056	9056		53.351	29.149	1	1004000	+		30470	22043	25035	25061	33735	33735					0.025617256147370426
LILSHVRPS	9	Unmodified	_LILSHVRPS_					0	0	0			REV__ENSG00000090487|ENST00000204566|SPG21	REV__ENSG00000090487|ENST00000204566|SPG21	MULTI-MSMS	OvCa9_classI_Rep3	3	511.3114013671875	2	511.311284	1020.60801	-0.30592	-0.00015642	-0.30288	-0.00015486	-0.6088	-0.00031129	511.3111316521226	74.24	1.5187	71.767	71.387	72.906	-2.4733					104	30	4	0	0	0	0.44294	1	3681	3681		47.916	9.1095	1	678530	+		30471	17223	25036	25062	33736	33736					0.09853441951145214
LILSIVFYSIA	11	Unmodified	_LILSIVFYSIA_					0	0	0		tr|A0A7D6W3B5|A0A7D6W3B5_9CLOTMBOATfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09250PE=3SV=1	tr|A0A7D6W3B5|A0A7D6W3B5_9CLOTMBOATfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09250PE=3SV=1	tr|A0A7D6W3B5|A0A7D6W3B5_9CLOTMBOATfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09250PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	619.86865234375	2	619.873382	1237.73221	-4.6351	-0.0028732	-1.4671	-0.00090943	-6.1022	-0.0037826	619.8722316862547	154.7	1.6496	154.47	153.32	154.97	-0.22696					44	35	2	0	0	0	0.72466	1	15751	15751		19.997	5.1319	1	26978			30472	35450	25037	25063	33737	33737					0.12285474927966789
LILSLEAKLNL	11	Unmodified	_LILSLEAKLNL_					0	0	0		OTUD7A|p.N531Tfs*88|1|0.84|ENSG00000169918|chr15:31484483-31484483|T/-|frameshift_variant;nc|ENSG00000169918|Q8TE49|OTUD7A;ENSG00000169918|ENST00000307050|OTUD7A	OTUD7A|p.N531Tfs*88|1|0.84|ENSG00000169918|chr15:31484483-31484483|T/-|frameshift_variant	OTUD7A|p.N531Tfs*88|1|0.84|ENSG00000169918|chr15:31484483-31484483|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	409.6086120605469	3	409.595468	1225.76457	-0.65511	-0.00026833	3.5538	0.0014556	2.8987	0.0011873	409.5970930487356	108.6	0.51168	106.87	106.67	107.18	-1.7256					14	9	2	0	0	0	0.025445	1	9933	9933		28.577	0	1	8381.6			30473	7054	25038	25064	33738	33738					0.1607226233095389
LILSLIFSFIV	11	Unmodified	_LILSLIFSFIV_					0	0	0		tr|A0A7D6VPC4|A0A7D6VPC4_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16160PE=4SV=1	tr|A0A7D6VPC4|A0A7D6VPC4_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16160PE=4SV=1	tr|A0A7D6VPC4|A0A7D6VPC4_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16160PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	632.367431640625	2	632.8994	1263.78425	-5.7463	-0.0036368	-4.1937	-0.0026542	-9.9399	-0.006291	633.3989236802784	162.05	0.5612	161.82	161.43	161.99	-0.22696					17	10	2	0	0	0	0.026339	1	16497	16497		15.642	0	1	35247			30474	34761	25039	25065	33739	33739					0.1629063834172939
LILSPTREL	9	Unmodified	_LILSPTREL_					0	0	0		ENSG00000088205|ENST00000263239|DDX18;nc|ENSG00000123064|Q8TDD1-2|DDX54;ENSG00000123064|ENST00000306014|DDX54	ENSG00000088205|ENST00000263239|DDX18;nc|ENSG00000123064|Q8TDD1-2|DDX54	ENSG00000088205|ENST00000263239|DDX18	MULTI-MSMS	OvCa99_classI_Rep5	1	521.319580078125	2	521.318774	1040.623	1.1754	0.00061273	0.78497	0.00040922	1.9603	0.001022	521.3191194666437	93.158	0.58245	93.158	92.885	93.468	0					31	13	3	0	0	0	0.045281	1	10087	10087		122.18	0	1	2592300			30475	1783;3567	25040	25066	33740	33740					0.10430889028475576
LILSTLFSV	9	Unmodified	_LILSTLFSV_					0	0	0			REV__tr|A0A553SR15|A0A553SR15_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00180PE=4SV=1	REV__tr|A0A553SR15|A0A553SR15_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00180PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	496.8035583496094	2	496.804968	991.595384	1.3482	0.00066979	-3.9678	-0.0019712	-2.6196	-0.0013014	496.80292732126213	147.55	2.0526	147.55	147.21	149.26	0					53	41	2	0	0	0	0.34496	1	17289	17289		57.811	7.7867	1	120490	+		30476	30680	25041	25067	33741	33741					0.09924985768248007
LILSVYYFVL	10	Unmodified	_LILSVYYFVL_					0	0	0			REV__ENSG00000139304|ENST00000644991|PTPRQ	REV__ENSG00000139304|ENST00000644991|PTPRQ	MULTI-MSMS	OvCa99_classI_Rep5	1	410.57818603515625	3	410.577526	1228.71075	0.63403	0.00026032	-0.061327	-2.518E-05	0.57271	0.00023514	410.57743262220424	39.24	0.92858	39.24	38.576	39.505	0					47	20	3	0	0	0	0.64697	1	2292	2292		36.447	10.555	1	411170	+		30477	19602	25042	25068	33742	33742					0.10554089899233077
LILTCKRM	8	Oxidation (M)	_LILTCKRM(Oxidation (M))_		LILTCKRM(1)		LILTCKRM(68)	0	0	1			REV__ENSG00000146477|ENST00000275300|SLC22A3	REV__ENSG00000146477|ENST00000275300|SLC22A3	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.282958984375	2	497.282823	992.551093	3.2265	0.0016045	-2.1141	-0.0010513	1.1125	0.00055321	497.2811483243697	133.79	1.3806	132.27	132	133.38	-1.5257					58	27	4	0	0	0	0.57878	1	12919	12919		68.485	7.5128	1	133500	+		30478	20020	25043	25069	33743	33743		462			0.05451935078758652
LILTCKRM	8	Oxidation (M)	_LILTCKRM(Oxidation (M))_					0	0	1			REV__ENSG00000146477|ENST00000275300|SLC22A3	REV__ENSG00000146477|ENST00000275300|SLC22A3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	497.282823	992.551093	0.33443	0.00016631	0.61068	0.00030368	0.94511	0.00046999	497.28262521340866	132.72	1.0847	132.49	132.28	133.36	-0.22696	0.11256	0.00069204	NaN	68.485	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75474	+		30479	20020	25043	25069				462			0.05451935078758652
LILTCKRM	8	Oxidation (M)	_LILTCKRM(Oxidation (M))_					0	0	1			REV__ENSG00000146477|ENST00000275300|SLC22A3	REV__ENSG00000146477|ENST00000275300|SLC22A3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	497.282823	992.551093	-0.57716	-0.00028701	1.5017	0.00074677	0.92453	0.00045976	497.28300956738445	133.51	1.0818	132.38	132.07	133.16	-1.1249	0.0014044	0.0015782	NaN	68.485	44	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62105	+		30480	20020	25043	25069				462			0.05451935078758652
LILTHISAR	9	Unmodified	_LILTHISAR_					0	0	0		tr|A0A553SQ49|A0A553SQ49_NIACIRibonucleaseZOS=NialliacirculansOX=1397GN=rnzPE=3SV=1	tr|A0A553SQ49|A0A553SQ49_NIACIRibonucleaseZOS=NialliacirculansOX=1397GN=rnzPE=3SV=1	tr|A0A553SQ49|A0A553SQ49_NIACIRibonucleaseZOS=NialliacirculansOX=1397GN=rnzPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	512.8350219726562	2	512.319109	1022.62366	-0.28125	-0.00014409	-0.4583	-0.0002348	-0.73956	-0.00037889	512.3186933389085	89.016	1.4435	86.885	86.51	87.954	-2.1309					57	28	3	0	0	0	0.027462	1	5546	5546		20.947	0	1	372840			30481	34119	25044	25070	33744	33744					0.11325728468182206
LILTIRLLIE	10	Unmodified	_LILTIRLLIE_					0	0	0			REV__chr18:9117903-9119331|106|17.22|0.84|4.35|+|2|NDUFV2,None|1	REV__chr18:9117903-9119331|106|17.22|0.84|4.35|+|2|NDUFV2,None|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	598.3180541992188	2	598.902474	1195.7904	0.022716	1.3605E-05	0.069889	4.1856E-05	0.092605	5.5461E-05	598.9024429774685	109.28	0.40464	107.55	107.33	107.73	-1.7256					11	7	2	0	0	0	0.027198	1	10028	10028		19.997	0	1	10841	+		30482	15959	25045	25071	33745	33745					0.20033156573208544
LILTKLYD	8	Unmodified	_LILTKLYD_					0	0	0		ENSG00000156395|ENST00000369701|SORCS3;nc|ENSG00000108018|Q8WY21-4|SORCS1;ENSG00000108018|ENST00000263054|SORCS1;nc|ENSG00000108018|Q8WY21-3|SORCS1;nc|ENSG00000108018|Q8WY21-2|SORCS1	ENSG00000156395|ENST00000369701|SORCS3	ENSG00000156395|ENST00000369701|SORCS3	MULTI-MSMS	OvCa99_classI_Rep5	1	489.7998962402344	2	489.797143	977.579734	0.35762	0.00017516	4.1576	0.0020364	4.5152	0.0022115	489.79900077673824	160.64	3.1469	160.64	159.38	162.53	0					149	62	3	0	0	0	0.66057	1	18846	18846		51.335	3.4199	1	288360			30483	5836	25046	25072	33746	33746					0.09004699251170223
LILTKQPVH	9	Unmodified	_LILTKQPVH_					0	0	0		MER57A-int_dup1703|chr19:23112751-23113886:+|1.0685339057591443|0.266030358890427|2.01|427.0|57|1|anti-sense	MER57A-int_dup1703|chr19:23112751-23113886:+|1.0685339057591443|0.266030358890427|2.01|427.0|57|1|anti-sense	MER57A-int_dup1703|chr19:23112751-23113886:+|1.0685339057591443|0.266030358890427|2.01|427.0|57|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	524.8270874023438	2	524.829309	1047.64407	-4.3888	-0.0023034	0.2202	0.00011557	-4.1686	-0.0021878	524.8292785030237	156.45	1.4045	156.23	155.89	157.3	-0.22696					98	36	4	0	0	0	0.53957	2	15921	15907;15921		38.806	4.6971	1	556080			30484	14835	25047	25073	33747;33748	33748					0.12214899127980061
LILTQKAAY	9	Unmodified	_LILTQKAAY_					0	0	0		nc|ENSG00000174527|Q8N1T3-3|MYO1H;nc|ENSG00000174527|Q8N1T3|MYO1H;ENSG00000174527|ENST00000310903|MYO1H;nc|ENSG00000174527|Q8N1T3-2|MYO1H	nc|ENSG00000174527|Q8N1T3-3|MYO1H	nc|ENSG00000174527|Q8N1T3-3|MYO1H	MULTI-SECPEP	OvCa9_classI_Rep3	3	510.845703125	2	510.808042	1019.60153	1.3994	0.00071483	-3.5916	-0.0018346	-2.1922	-0.0011198	510.8058835617792	124.3	0.20914	123.26	123.08	123.29	-1.0377					5	3	2	0	0	0	0.027462	1	9629	9629		37.159	0	1	9614.3			30485	7472	25048	25074	33749	33749					0.09251503999746546
LILVAPVASIL	11	Unmodified	_LILVAPVASIL_					0	0	0			REV__nc|ENSG00000123552|Q70EL2-3|USP45	REV__nc|ENSG00000123552|Q70EL2-3|USP45	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.8687744140625	2	554.870643	1107.72673	1.2589	0.0006985	-3.9225	-0.0021765	-2.6636	-0.001478	554.8683554320133	36.062	1.2954	33.213	32.99	34.285	-2.849					70	25	4	0	0	0	0.72244	1	1240	1240		21.96	3.6355	1	499100	+		30486	18647	25049	25075	33750	33750					0.1771779613613944
LILVEPKGPA	10	Unmodified	_LILVEPKGPA_					0	0	0		tr|A0A7D6ZI70|A0A7D6ZI70_9CLOTPhosphoribosyl-AMPcyclohydrolaseOS=ClostridiumintestinaleOX=36845GN=hisIPE=3SV=1	tr|A0A7D6ZI70|A0A7D6ZI70_9CLOTPhosphoribosyl-AMPcyclohydrolaseOS=ClostridiumintestinaleOX=36845GN=hisIPE=3SV=1	tr|A0A7D6ZI70|A0A7D6ZI70_9CLOTPhosphoribosyl-AMPcyclohydrolaseOS=ClostridiumintestinaleOX=36845GN=hisIPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.3514404296875	2	518.823692	1035.63283	0.34708	0.00018007	0.71469	0.0003708	1.0618	0.00055087	519.3255610054022	134.08	0.24539	133.86	133.66	133.9	-0.22696					5	4	2	0	0	0	0.026915	1	13275	13275		27.882	0	1	4094.4			30487	35607	25050	25076	33751	33751					0.11644077033861322
LILVILEEEF	10	Unmodified	_LILVILEEEF_					0	0	0			REV__ENST00000433671.2_1_1:39325692-39325881:+|nuORF	REV__ENST00000433671.2_1_1:39325692-39325881:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	608.8737182617188	2	609.355022	1216.69549	1.9982	0.0012176	2.3626	0.0014396	4.3607	0.0026572	609.3562502323783	126.25	0.56716	126.25	126.04	126.61	0					20	11	3	0	0	0	0.026752	1	14637	14637		53.351	12.779	1	50131	+		30488	25751	25051	25077	33752	33752					0.09581178311350413
LILVIRTAP	9	Unmodified	_LILVIRTAP_					0	0	0			REV__ENSG00000149609|ENST00000375222|C20orf144	REV__ENSG00000149609|ENST00000375222|C20orf144	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3338623046875	2	498.334227	994.653902	-0.32382	-0.00016137	-0.21052	-0.00010491	-0.53434	-0.00026628	498.334091062265	122.71	0.88941	122.49	122.12	123.01	-0.21803					72	17	5	0	0	0	0.42057	1	11865	11865		50.025	4.0726	1	2870900	+		30489	20172	25052	25078	33753	33753					0.15636087133373167
LILVIRTAP	9	Unmodified	_LILVIRTAP_					0	0	0			REV__ENSG00000149609|ENST00000375222|C20orf144	REV__ENSG00000149609|ENST00000375222|C20orf144	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3337707519531	2	498.334227	994.653902	0.034655	1.727E-05	-0.51496	-0.00025662	-0.48031	-0.00023935	498.3339335091273	123.54	3.2541	123.31	122.99	126.25	-0.23193					175	65	5	0	0	0	0.34496	1	12028	12028		57.811	6.4758	1	3004600	+		30490	20172	25052	25078	33754	33754					0.15636087133373167
LILVPIGVW	9	Unmodified	_LILVPIGVW_					0	0	0		TMED9|p.A216P|1|0.08|ENSG00000184840|chr5:177595354-177595354|G/C|missense_variant	TMED9|p.A216P|1|0.08|ENSG00000184840|chr5:177595354-177595354|G/C|missense_variant	TMED9|p.A216P|1|0.08|ENSG00000184840|chr5:177595354-177595354|G/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.3114929199219	2	505.325871	1008.63719	2.1429	0.0010829	-2.4015	-0.0012135	-0.25857	-0.00013066	505.32522269207715	77.024	0.33012	77.024	76.922	77.252	0					9	7	2	0	0	0	0.027462	1	7739	7739		29.842	3.0454	1	195740			30491	32963	25053	25079	33755	33755					0.13321586247423056
LILVSTFVS	9	Unmodified	_LILVSTFVS_					0	0	0		ENSG00000228567|ENST00000311170|VN1R4	ENSG00000228567|ENST00000311170|VN1R4	ENSG00000228567|ENST00000311170|VN1R4	MULTI-MSMS	OvCa99_classI_Rep5	1	489.8003845214844	2	489.797143	977.579734	0.35762	0.00017516	4.1576	0.0020364	4.5152	0.0022115	489.79900077673824	160.64	3.1469	160.64	159.38	162.53	0					149	62	3	0	0	0	0.6653	1	18942	18942		24.203	0	1	288360			30492	9280	25054	25080	33756	33756					0.09004699251204329
LILVVQMGRPM	11	Unmodified	_LILVVQMGRPM_					0	0	0			REV__ENST00000552879.5_1_12:49494935-49496886:-|nuORF	REV__ENST00000552879.5_1_12:49494935-49496886:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	628.8619384765625	2	628.864511	1255.71447	1.0406	0.00065438	-3.9124	-0.0024604	-2.8718	-0.001806	628.8619073964604	36.299	1.3962	33.45	32.889	34.285	-2.849					66	27	4	0	0	0	0.71191	1	1263	1263		25.574	2.5316	1	180820	+		30493	27502	25055	25081	33757	33757					0.09684113129787875
LILYHPSL	8	Unmodified	_LILYHPSL_					0	0	0			REV__ENST00000464196.5_1_Y:22749894-22750047:+|nuORF	REV__ENST00000464196.5_1_Y:22749894-22750047:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	477.7675476074219	2	478.284203	954.553853	-0.18829	-9.0055E-05	-3.8394	-0.0018363	-4.0277	-0.0019264	478.2821836827744	87.644	1.4841	85.467	84.834	86.318	-2.1768					69	28	3	0	0	0	0.028476	1	5328	5328		21.702	0	1	269600	+		30494	26145	25056	25082	33758	33758					0.07475849799561729
LILYRPFF	8	Unmodified	_LILYRPFF_					0	0	0			REV__ENST00000407073.5_2_2:149216331-149221335:+|nuORF	REV__ENST00000407073.5_2_2:149216331-149221335:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.2860107421875	2	534.81567	1067.61679	1.4558	0.00077858	0.72504	0.00038776	2.1808	0.0011663	534.8157665884145	147.51	0.48373	147.51	147.26	147.74	0					19	9	3	0	0	0	0.028476	1	17232	17232		8.8223	0	1	51730	+		30495	25448	25057	25083	33759	33759					0.08568415587615164
LILYVLPLGII	11	Unmodified	_LILYVLPLGII_					0	0	0		ENSG00000185149|ENST00000329476|NPY2R	ENSG00000185149|ENST00000329476|NPY2R	ENSG00000185149|ENST00000329476|NPY2R	MULTI-MSMS	OvCa9_classI_Rep2	2	409.6076354980469	3	409.608937	1225.80498	0.6889	0.00028218	-3.0246	-0.0012389	-2.3357	-0.00095672	409.60766459120623	104.29	12.102	103.72	103.28	115.38	-0.57639					699	244	5	0	0	0	0.43993	1	9700	9700		58.23	7.0372	1	1628000			30496	8229	25058	25084	33760	33760					0.20111228721384578
LIMDVYKL	8	Unmodified	_LIMDVYKL_					0	0	0		ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENSG00000099949|ENST00000646124|LZTR1;CRKL-LZTR1|1|fusion	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	497.789306640625	2	497.785721	993.55689	2.3602	0.0011749	3.6887	0.0018362	6.049	0.0030111	497.78745467884704	91.646	0.84479	91.646	91.372	92.216	0					53	19	4	0	0	0	0.36941	1	9868	9868		94.006	3.2298	1	8536200			30497	680	25059	25085	33761	33761					0.05985356862061053
LIMGRKVK	8	Unmodified	_LIMGRKVK_					0	0	0		ENSG00000104332|ENST00000220772|SFRP1	ENSG00000104332|ENST00000220772|SFRP1	ENSG00000104332|ENST00000220772|SFRP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.7740173339844	2	472.807322	943.600092	0.0063544	3.0044E-06	-4.2434	-0.0020063	-4.237	-0.0020033	472.8049891572792	70.557	0.24455	67.076	66.934	67.178	-3.4812					5	4	2	0	0	0	0.028476	1	5324	5324		12.959	0	1	14205			30498	2368	25060	25086	33762	33762					0.1260359143000187
LIMIAVYLLF	10	Unmodified	_LIMIAVYLLF_					0	0	0		tr|A0A553SPJ2|A0A553SPJ2_NIACIABCtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_26465PE=3SV=1	tr|A0A553SPJ2|A0A553SPJ2_NIACIABCtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_26465PE=3SV=1	tr|A0A553SPJ2|A0A553SPJ2_NIACIABCtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_26465PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	599.3411865234375	2	598.361596	1194.70864	-0.0032278	-1.9314E-06	-0.67659	-0.00040484	-0.67981	-0.00040677	598.3610767584278	93.765	0.6819	91.258	91.14	91.821	-2.5072					28	14	2	0	0	0	0.026839	1	8178	8178		19.36	10.177	1	91498			30499	34050	25061	25087	33763	33763					0.11907337889761038
LIMIEQPLD	9	Unmodified	_LIMIEQPLD_					0	0	0		tr|A0A553SST7|A0A553SST7_NIACIo-succinylbenzoatesynthaseOS=NialliacirculansOX=1397GN=menCPE=4SV=1	tr|A0A553SST7|A0A553SST7_NIACIo-succinylbenzoatesynthaseOS=NialliacirculansOX=1397GN=menCPE=4SV=1	tr|A0A553SST7|A0A553SST7_NIACIo-succinylbenzoatesynthaseOS=NialliacirculansOX=1397GN=menCPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.810791015625	2	536.291368	1070.56818	-0.00059786	-3.2063E-07	0.92354	0.00049529	0.92295	0.00049497	536.2916874154876	58.441	1.0133	58.441	58.069	59.083	0					48	24	3	0	0	0	0.027441	1	4930	4930		49.442	1.7842	1	1503100			30500	34418	25062	25088	33764	33764					0.03572134165551688
LIMKGKADVV	10	Unmodified	_LIMKGKADVV_					0	0	0			REV__tr|A0A7D6VMG6|A0A7D6VMG6_9CLOTDihydropyrimidinaseOS=ClostridiumintestinaleOX=36845GN=hydAPE=3SV=1	REV__tr|A0A7D6VMG6|A0A7D6VMG6_9CLOTDihydropyrimidinaseOS=ClostridiumintestinaleOX=36845GN=hydAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.302490234375	2	537.323002	1072.63145	-0.93192	-0.00050074	-1.1676	-0.00062738	-2.0995	-0.0011281	537.3221318006833	56.29	0.50355	52.995	52.769	53.272	-3.2944					12	9	2	0	0	0	0.027021	1	3623	3623		29.15	10.825	1	19511	+		30501	31133	25063	25089	33765	33765					0.09804119673435707
LIMLLLTQL	9	Unmodified	_LIMLLLTQL_					0	0	0			REV__ENST00000454928.5_2_2:110705383-110742349:+|nuORF	REV__ENST00000454928.5_2_2:110705383-110742349:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.3094482421875	2	529.338121	1056.66169	-0.50408	-0.00026683	4.369	0.0023127	3.8649	0.0020459	529.3401253341311	48.449	0.46989	48.449	48.248	48.718	0					19	10	3	0	0	0	0.027418	1	3530	3530		58.782	10.866	1	171870	+		30502	26011	25064	25090	33766	33766					0.13562478338644723
LIMLLSGR	8	Unmodified	_LIMLLSGR_					0	0	0		tr|A0A553SKC9|A0A553SKC9_NIACIAspartate--tRNA(Asp/Asn)ligaseOS=NialliacirculansOX=1397GN=aspSPE=3SV=1	tr|A0A553SKC9|A0A553SKC9_NIACIAspartate--tRNA(Asp/Asn)ligaseOS=NialliacirculansOX=1397GN=aspSPE=3SV=1	tr|A0A553SKC9|A0A553SKC9_NIACIAspartate--tRNA(Asp/Asn)ligaseOS=NialliacirculansOX=1397GN=aspSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	451.7803039550781	2	451.778231	901.541908	2.6917	0.0012161	1.5788	0.00071328	4.2705	0.0019293	451.7788715133923	137.54	1.2376	136	135.67	136.9	-1.5437					54	27	4	0	0	0	0.74971	1	13402	13402		26.796	0	1	51174			30503	33602	25065	25091	33767	33767					0.08719909784736046
LIMLSRLVL	9	Unmodified	_LIMLSRLVL_					0	0	0		ENST00000526390.5_1_12:104683270-104742190:+|nuORF	ENST00000526390.5_1_12:104683270-104742190:+|nuORF	ENST00000526390.5_1_12:104683270-104742190:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	529.3422241210938	2	529.343738	1056.67292	-1.2903	-0.00068304	-1.3462	-0.00071261	-2.6366	-0.0013956	529.342852686274	137.98	1.4177	137.76	137.44	138.86	-0.22696					43	28	2	0	0	0	0.59983	1	13751	13751		31.955	0	1	35179			30504	13215	25066	25092	33768	33768					0.14685300432756776
LIMLYIFPI	9	Unmodified	_LIMLYIFPI_					0	0	0		tr|A0A553SQ78|A0A553SQ78_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_21945PE=4SV=1	tr|A0A553SQ78|A0A553SQ78_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_21945PE=4SV=1	tr|A0A553SQ78|A0A553SQ78_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_21945PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	561.3087158203125	2	561.835214	1121.65588	0.58462	0.00032846	-2.1814	-0.0012256	-1.5967	-0.00089711	561.8340237411572	80.215	1.0755	77.504	77.075	78.15	-2.7106					40	21	2	0	0	0	0.027462	1	6605	6605		21.702	0	1	88606			30505	34130	25067	25093	33769	33769					0.09991379826965385
LIMMILTIK	9	Unmodified	_LIMMILTIK_					0	0	0			REV__tr|A0A553SSX4|A0A553SSX4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03860PE=4SV=1	REV__tr|A0A553SSX4|A0A553SSX4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03860PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.8060913085938	2	538.334524	1074.6545	-1.2721	-0.00068482	0.60204	0.0003241	-0.67006	-0.00036072	538.3348055486642	74.595	1.2977	72.623	72.324	73.622	-1.9711					51	24	3	0	0	0	0.027462	1	6083	6083		23.042	0.0057756	1	59287	+		30506	30891	25068	25094	33770	33770					0.12015422466561176
LIMMTKIFS	9	Unmodified	_LIMMTKIFS_					0	0	0			REV__ENST00000482928.5_1_1:46646779-46650297:+|nuORF	REV__ENST00000482928.5_1_1:46646779-46650297:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	542.81640625	2	542.300681	1082.58681	1.081	0.00058624	-1.003	-0.00054394	0.078006	4.2303E-05	542.2998580373057	68.158	1.1991	65.344	65.112	66.312	-2.8143					41	23	3	0	0	0	0.027426	1	3027	3027		56.721	0	1	31141	+		30507	18353	25069	25095	33771	33771					0.048819725357361676
LIMMTKIFS	9	Unmodified	_LIMMTKIFS_					0	0	0			REV__ENST00000482928.5_1_1:46646779-46650297:+|nuORF	REV__ENST00000482928.5_1_1:46646779-46650297:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.300681	1082.58681	-1.6489	-0.00089418	3.0435	0.0016505	1.3946	0.0007563	542.302099207233	67.745	1.3834	65.084	64.842	66.226	-2.661	-0.17423	0.0015816	NaN	56.721	57	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116450	+		30508	18353	25069	25095							0.048819725357361676
LIMMTKIFS	9	Unmodified	_LIMMTKIFS_					0	0	0			REV__ENST00000482928.5_1_1:46646779-46650297:+|nuORF	REV__ENST00000482928.5_1_1:46646779-46650297:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	542.300681	1082.58681	-0.71925	-0.00039005	2.2594	0.0012253	1.5401	0.00083522	542.3015072848002	68.837	1.1777	65.346	65.014	66.192	-3.4902	0.088371	0.00073115	NaN	56.721	55	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149150	+		30509	18353	25069	25095							0.048819725357361676
LIMPKNAPN	9	Unmodified	_LIMPKNAPN_					0	0	0		tr|A0A553SK57|A0A553SK57_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_18105PE=4SV=1	tr|A0A553SK57|A0A553SK57_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_18105PE=4SV=1	tr|A0A553SK57|A0A553SK57_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_18105PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	499.7685546875	2	499.278595	996.542637	-1.0225	-0.00051052	-3.4535	-0.0017243	-4.4761	-0.0022348	499.2765184248734	103.72	1.1364	103.14	102.58	103.72	-0.57639					33	22	2	0	0	0	0.027449	1	9528	9528		31.955	17.09	1	27168			30510	33579	25070	25096	33772	33772					0.04422704433773106
LIMPNQIKV	9	Oxidation (M)	_LIM(Oxidation (M))PNQIKV_		LIM(1)PNQIKV		LIM(82)PNQIKV	0	0	1			REV__ENSG00000172915|ENST00000379939|NBEA	REV__ENSG00000172915|ENST00000379939|NBEA	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.2501831054688	2	536.315177	1070.6158	2.298	0.0012324	-3.1115	-0.0016687	-0.81354	-0.00043631	536.3133578950566	120.88	0.82445	119.85	119.61	120.43	-1.0271					26	15	2	0	0	0	0.027279	1	9224	9224		82.305	11.009	1	92350	+		30511	21736	25071	25097	33773	33773		506			0.08331833156398716
LIMQLKQSL	9	Unmodified	_LIMQLKQSL_					0	0	0			REV__ENST00000442060.7_1_5:118862877-118877689:+|nuORF	REV__ENST00000442060.7_1_5:118862877-118877689:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.75390625	2	537.323002	1072.63145	0.93902	0.00050456	-1.9826	-0.0010653	-1.0435	-0.00056071	537.3217226361712	124.28	0.36539	124.28	124.1	124.47	0					10	7	2	0	0	0	0.027457	1	14360	14360		56.434	0	1	57969	+		30512	19160	25072	25098	33774	33774					0.09804119673435707
LIMRCPHLS	9	Unmodified	_LIMRCPHLS_					0	0	0			REV__ENSG00000179142|ENST00000323110|CYP11B2	REV__ENSG00000179142|ENST00000323110|CYP11B2	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.2454223632812	2	535.285897	1068.55724	-0.69106	-0.00036991	3.2606	0.0017454	2.5696	0.0013755	535.2875042735449	113.9	1.8755	113.78	113.42	115.29	-0.11777					60	37	3	0	0	0	0.027279	1	10821	10821		60.972	9.6365	1	250540	+		30513	22105	25073	25099	33775	33775					0.02570453310272569
LIMVDSLKK	9	Unmodified	_LIMVDSLKK_					0	0	0			REV__SCN2A|p.D1935Vfs*2|1|0.11|ENSG00000136531|chr2:165389608-165389609|-/GTTT|frameshift_variant;REV__nc|ENSG00000144285|P35498-3|SCN1A;REV__nc|ENSG00000153253|Q9NY46-4|SCN3A;REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A	REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A	MULTI-MSMS	OvCa99_classI_Rep5	1	523.82080078125	2	523.817553	1045.62055	0.42997	0.00022523	-1.8533	-0.00097077	-1.4233	-0.00074554	523.816422267518	152.75	0.59613	152.75	152.55	153.15	0					26	14	2	0	0	0	0.40667	1	17900	17900		51.335	3.4199	1	77461	+		30514	19391;22872;19900;20333	25074	25100	33776	33776					0.09956717299155571
LIMVWINAF	9	Unmodified	_LIMVWINAF_					0	0	0		ENSG00000176142|ENST00000319172|TMEM39A;ENST00000468545.1_1_3:119155636-119156697:-|nuORF	ENSG00000176142|ENST00000319172|TMEM39A	ENSG00000176142|ENST00000319172|TMEM39A	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.2630615234375	2	553.806988	1105.59942	1.2488	0.00069157	2.6319	0.0014576	3.8806	0.0021491	553.8087429196727	143.39	0.59447	143.39	143.07	143.66	0					18	11	2	0	0	0	0.027462	1	16786	16786		18.324	0	1	81748			30515	7585	25075	25101	33777	33777					0.050847519902845306
LIMYGFVK	8	Unmodified	_LIMYGFVK_					0	0	0		ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.7584533691406	2	485.775157	969.53576	1.2833	0.00062339	3.5281	0.0017139	4.8114	0.0023373	485.77662182172435	115.17	0.37019	115.17	114.98	115.35	0					11	7	2	0	0	0	0.028476	1	13149	13149		28.254	0	1	84075			30516	7957	25076	25102	33778	33778					0.04977391553211419
LIMYVANNVN	10	Unmodified	_LIMYVANNVN_					0	0	0			REV__ENSG00000081148|ENST00000193391|IMPG2	REV__ENSG00000081148|ENST00000193391|IMPG2	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.8514404296875	2	575.799891	1149.58523	-1.1186	-0.00064407	-4.3984	-0.0025326	-5.517	-0.0031767	576.2977163259617	89.171	0.24667	87.04	86.895	87.141	-2.1309					7	4	2	0	0	0	0.026871	1	5464	5464		29.15	16.943	1	14053	+		30517	17066	25077	25103	33779	33779					0.016420547713323685
LINAIKNAV	9	Unmodified	_LINAIKNAV_					0	0	0		tr|A0A7D6ZGS5|A0A7D6ZGS5_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_23855PE=4SV=1	tr|A0A7D6ZGS5|A0A7D6ZGS5_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_23855PE=4SV=1	tr|A0A7D6ZGS5|A0A7D6ZGS5_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_23855PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.7627868652344	2	478.300384	954.586216	-0.17159	-8.2071E-05	0.10288	4.9206E-05	-0.068713	-3.2866E-05	478.30024230289604	58.719	1.3509	58.719	58.488	59.839	0					59	34	3	0	0	0	0.027456	1	5066	5066		38.806	8.3025	1	4724600			30518	35549	25078	25104	33780	33780					0.10710637202555517
LINEDRVVL	9	Unmodified	_LINEDRVVL_					0	0	0			REV__tr|A0A7D6ZZ98|A0A7D6ZZ98_9CLOTDJ-1/PfpIfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05270PE=4SV=1	REV__tr|A0A7D6ZZ98|A0A7D6ZZ98_9CLOTDJ-1/PfpIfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05270PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.8153076171875	2	535.813856	1069.61316	-1.9418	-0.0010404	3.937	0.0021095	1.9952	0.0010691	535.8153037709967	45.014	1.1956	41.976	41.714	42.909	-3.0385					39	22	3	0	0	0	0.38969	1	2271	2271		52.937	10.541	1	700520	+		30519	32402	25079	25105	33781	33781					0.08113701023103204
LINFAHGDI	9	Unmodified	_LINFAHGDI_					0	0	0		tr|A0A7D6VRC4|A0A7D6VRC4_9CLOTBranched-chainaminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06260PE=3SV=1	tr|A0A7D6VRC4|A0A7D6VRC4_9CLOTBranched-chainaminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06260PE=3SV=1	tr|A0A7D6VRC4|A0A7D6VRC4_9CLOTBranched-chainaminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06260PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	500.26580810546875	2	500.266542	998.51853	2.3811	0.0011912	-1.5903	-0.0007956	0.79079	0.00039561	500.26571249280704	99.513	0.45895	99.513	99.318	99.777	0					21	10	3	0	0	0	0.28934	1	10998	10998		64.207	1.2288	1	1460800			30520	34915	25080	25106	33782	33782					0.01921187271761937
LINFDKDNI	9	Unmodified	_LINFDKDNI_					0	0	0		ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MSMS	OvCa99_classI_Rep5	1	546.2913208007812	2	546.290214	1090.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.03	1	107.03	106.53	107.53	0								0	0	0	0.076951	1	12061	12061		74.255	7.8258	1				30521	8123	25081	25107	33783	33783					0.02421421752092101
LINGAIRGIN	10	Unmodified	_LINGAIRGIN_					0	0	0		tr|A0A7D6VPV6|A0A7D6VPV6_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13125PE=4SV=1	tr|A0A7D6VPV6|A0A7D6VPV6_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13125PE=4SV=1	tr|A0A7D6VPV6|A0A7D6VPV6_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13125PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	520.8134765625	2	520.81419	1039.61383	-0.20242	-0.00010542	-0.2148	-0.00011187	-0.41722	-0.00021729	520.8138918216625	74.269	0.83749	72.298	72.009	72.847	-1.9711					36	15	3	0	0	0	0.72319	1	6085	6085		27.882	1.1893	1	295460			30522	34802	25082	25108	33784	33784					0.09560540462803147
LINGAIRGIN	10	Unmodified	_LINGAIRGIN_					0	0	0		tr|A0A7D6VPV6|A0A7D6VPV6_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13125PE=4SV=1	tr|A0A7D6VPV6|A0A7D6VPV6_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13125PE=4SV=1	tr|A0A7D6VPV6|A0A7D6VPV6_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13125PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	520.81419	1039.61383	-0.22337	-0.00011633	0.34534	0.00017986	0.12197	6.3524E-05	520.8139960225348	74.312	0.9382	71.901	71.598	72.536	-2.4106	-0.19932	0.00049117	NaN	27.882	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146870			30523	34802	25082	25108							0.09560540462803147
LINGAIRGIN	10	Unmodified	_LINGAIRGIN_					0	0	0		tr|A0A7D6VPV6|A0A7D6VPV6_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13125PE=4SV=1	tr|A0A7D6VPV6|A0A7D6VPV6_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13125PE=4SV=1	tr|A0A7D6VPV6|A0A7D6VPV6_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13125PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	520.81419	1039.61383	-0.23121	-0.00012042	-0.39736	-0.00020695	-0.62857	-0.00032737	520.8137699061633	75.333	0.82433	72.103	71.82	72.645	-3.2308	0.0020349	-0.00028245	NaN	27.882	41	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	375110			30524	34802	25082	25108							0.09560540462803147
LINGELLNI	9	Unmodified	_LINGELLNI_					0	0	0			REV__tr|A0A7D6ZMW1|A0A7D6ZMW1_9CLOTCachedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13700PE=3SV=1	REV__tr|A0A7D6ZMW1|A0A7D6ZMW1_9CLOTCachedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13700PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	499.7985534667969	2	499.797675	997.580796	0.8295	0.00041458	1.2741	0.00063679	2.1036	0.0010514	499.7981122590404	153.59	0.67809	153.59	153.35	154.03	0					21	13	3	0	0	0	0.21231	1	17991	17991		74.255	7.8258	1	69985	+		30525	32112	25083	25109	33785	33785					0.08190913620080664
LINIIIKNVSE	11	Unmodified	_LINIIIKNVSE_					0	0	0		tr|A0A7D6ZS01|A0A7D6ZS01_9CLOTSulfateABCtransporterpermeasesubunitCysWOS=ClostridiumintestinaleOX=36845GN=cysWPE=4SV=1	tr|A0A7D6ZS01|A0A7D6ZS01_9CLOTSulfateABCtransporterpermeasesubunitCysWOS=ClostridiumintestinaleOX=36845GN=cysWPE=4SV=1	tr|A0A7D6ZS01|A0A7D6ZS01_9CLOTSulfateABCtransporterpermeasesubunitCysWOS=ClostridiumintestinaleOX=36845GN=cysWPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	628.3824462890625	2	628.384645	1254.75474	-4.0512	-0.0025457	0.66972	0.00042084	-3.3814	-0.0021248	628.3849132400738	150.53	4.7174	149.58	148	152.71	-0.95647					178	94	2	0	0	0	0.72479	1	12723	12723		18.262	0	1	419100			30526	35728	25084	25110	33786	33786					0.13755074325536043
LINKGKINT	9	Unmodified	_LINKGKINT_					0	0	0			REV__tr|A0A7D6VQK7|A0A7D6VQK7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21450PE=4SV=1	REV__tr|A0A7D6VQK7|A0A7D6VQK7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21450PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.7550048828125	2	500.811116	999.60768	-0.42217	-0.00021143	-0.26221	-0.00013132	-0.68438	-0.00034275	500.8110405814196	58.889	0.55268	58.889	58.53	59.083	0					24	13	3	0	0	0	0.027461	1	5051	5051		58.782	2.0609	1	470800	+		30527	31334	25085	25111	33787	33787					0.10786022231286552
LINLIKVF	8	Unmodified	_LINLIKVF_					0	0	0		ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2	ENSG00000144554|ENST00000675286|FANCD2	ENSG00000144554|ENST00000675286|FANCD2	MULTI-MSMS	OvCa9_classI_Rep2	2	480.317626953125	2	480.318046	958.621539	0.60293	0.0002896	-0.4826	-0.0002318	0.12033	5.7799E-05	480.3176337071437	130.34	1.4398	130.11	129.86	131.3	-0.22697					62	28	4	0	0	0	0.72922	2	12827	12827;12852		37.028	0	1	107540			30528	5157	25086	25112	33788;33789	33788					0.14057299730370687
LINLNITITY	10	Unmodified	_LINLNITITY_					0	0	0		tr|A0A7D6VSK2|A0A7D6VSK2_9CLOTCrp/FnrfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23045PE=4SV=1	tr|A0A7D6VSK2|A0A7D6VSK2_9CLOTCrp/FnrfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23045PE=4SV=1	tr|A0A7D6VSK2|A0A7D6VSK2_9CLOTCrp/FnrfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23045PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3425903320312	2	589.344989	1176.67542	-5.1334	-0.0030254	1.6192	0.00095427	-3.5142	-0.0020711	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.6104	1	12360	12360		40.778	4.3314	1	589610			30529	35033	25087	25113	33790	33790					0.09415427371436635
LINLPPPQE	9	Unmodified	_LINLPPPQE_					0	0	0			REV__ENSG00000112290|ENST00000392589|WASF1	REV__ENSG00000112290|ENST00000392589|WASF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.3078918457031	2	510.78985	1019.56515	0.60805	0.00031059	-0.60015	-0.00030655	0.0078955	4.0329E-06	510.78940129470794	110.53	1.3153	108.93	108.6	109.91	-1.6011					49	24	3	0	0	0	0.027462	1	10265	10265		29.15	0	1	140580	+		30530	18091	25088	25114	33791	33791					0.056146271030456774
LINLPPPQE	9	Unmodified	_LINLPPPQE_					0	0	0			REV__ENSG00000112290|ENST00000392589|WASF1	REV__ENSG00000112290|ENST00000392589|WASF1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	510.78985	1019.56515	0.054938	2.8062E-05	-0.074662	-3.8137E-05	-0.019725	-1.0075E-05	510.7896205383775	109.02	1.2374	108.79	108.47	109.71	-0.22498	-0.059439	0.00012238	NaN	45.952	55	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106420	+		30531	18091	25088	25114							0.056146271030456774
LINLPPPQE	9	Unmodified	_LINLPPPQE_					0	0	0			REV__ENSG00000112290|ENST00000392589|WASF1	REV__ENSG00000112290|ENST00000392589|WASF1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	510.78985	1019.56515	0.053109	2.7128E-05	-0.014976	-7.6496E-06	0.038133	1.9478E-05	510.78975132464177	109.97	1.4084	108.83	108.45	109.86	-1.1444	-0.022914	0.00018336	NaN	45.952	55	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110960	+		30532	18091	25088	25114							0.056146271030456774
LINMIANYL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LINMIANYL_					1	0	0			REV__ENSG00000123066|ENST00000281928|MED13L	REV__ENSG00000123066|ENST00000281928|MED13L	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8001098632812	2	553.79936	1105.58417	0.29019	0.00016071	2.7254	0.0015093	3.0156	0.00167	553.800853090458	59.574	2.3577	56.794	56.241	58.599	-2.7801					121	44	5	0	0	0	0.19716	1	4371	4371		76.847	14.739	1	1718100	+		30533	18621	25089	25115	33792	33792					0.03559840402431291
LINNLLQVKM	10	Unmodified	_LINNLLQVKM_					0	0	0		ENSG00000115825|ENST00000234179|PRKD3;ENST00000597589.5_1_19:47177782-47200527:-|nuORF;ENST00000599019.5_1_19:47177782-47200527:-|nuORF;nc|ENSG00000105287|Q9BZL6-2|PRKD2;ENSG00000105287|ENST00000291281|PRKD2;nc|ENSG00000105287|Q9BZL6-3|PRKD2;ENSG00000184304|ENST00000331968|PRKD1;FANCA-PRKD2|1|fusion	ENSG00000115825|ENST00000234179|PRKD3;FANCA-PRKD2|1|fusion	FANCA-PRKD2|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep3	3	593.8079223632812	2	593.354834	1184.69511	-1.1084	-0.00065765	1.432	0.00084971	0.32369	0.00019206	593.8593549390702	84.715	0.2495	82.454	82.258	82.508	-2.261					6	4	2	0	0	0	0.026915	1	4915	4915		27.882	4.3595	1	10925			30534	3130;14323	25090	25116	33793	33793					0.1101548011054092
LINNRIIETL	10	Unmodified	_LINNRIIETL_					0	0	0		tr|A0A7D6VXZ0|A0A7D6VXZ0_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14565PE=4SV=1	tr|A0A7D6VXZ0|A0A7D6VXZ0_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14565PE=4SV=1	tr|A0A7D6VXZ0|A0A7D6VXZ0_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14565PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	400.2444152832031	3	400.243317	1197.70812	1.3067	0.00052301	0.10698	4.2817E-05	1.4137	0.00056583	400.2432245254957	39.743	1.7317	37.033	36.755	38.487	-2.7097					74	34	3	0	0	0	0.77834	1	1973	1973		21.686	2.4231	1	139570			30535	35308	25091	25117	33794	33794					0.11717634494289086
LINPPIAVIT	10	Unmodified	_LINPPIAVIT_					0	0	0		tr|A0A553SS13|A0A553SS13_NIACIBranched-chainaminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_02285PE=3SV=1	tr|A0A553SS13|A0A553SS13_NIACIBranched-chainaminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_02285PE=3SV=1	tr|A0A553SS13|A0A553SS13_NIACIBranched-chainaminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_02285PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	525.83251953125	2	525.831517	1049.64848	0.74458	0.00039152	0.99427	0.00052282	1.7388	0.00091434	525.83194601751	156.25	2.5735	156.25	155.89	158.46	0					107	51	3	0	0	0	0.48198	1	18442	18442		56.721	6.6965	1	333000			30536	34321	25092	25118	33795	33795					0.12564363550905
LINRFGAMNSL	11	Unmodified	_LINRFGAMNSL_					0	0	0			REV__tr|A0A7D6ZGI2|A0A7D6ZGI2_9CLOTDUF86domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18725PE=3SV=1	REV__tr|A0A7D6ZGI2|A0A7D6ZGI2_9CLOTDUF86domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18725PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	412.5441589355469	3	412.557019	1234.64923	-0.35579	-0.00014678	-0.034213	-1.4115E-05	-0.39001	-0.0001609	412.55726280899705	63.626	0.21161	60.881	60.79	61.002	-2.7444					5	3	2	0	0	0	0.025722	1	4817	4817		34.087	0	1	10711	+		30537	32000	25093	25119	33796	33796					0.04128834928314973
LINRPILVL	9	Unmodified	_LINRPILVL_					0	0	0		ENSG00000186765|ENST00000417245|FSCN2;nc|ENSG00000186765|O14926-2|FSCN2	ENSG00000186765|ENST00000417245|FSCN2	ENSG00000186765|ENST00000417245|FSCN2	MULTI-MSMS	OvCa99_classI_Rep5	1	525.8563842773438	2	525.855327	1049.6961	1.3326	0.00070078	0.55249	0.00029053	1.8851	0.0009913	525.8555111735291	127.1	1.4503	127.1	126.69	128.14	0					83	31	4	0	0	0	0.25214	1	14705	14705		68.485	2.6815	1	4632300			30538	8359	25094	25120	33797	33797					0.17324062541752028
LINRPILVL	9	Unmodified	_LINRPILVL_					0	0	0		ENSG00000186765|ENST00000417245|FSCN2;nc|ENSG00000186765|O14926-2|FSCN2	ENSG00000186765|ENST00000417245|FSCN2	ENSG00000186765|ENST00000417245|FSCN2	MULTI-MSMS	OvCa9_classI_Rep3	3	525.8541259765625	2	525.855327	1049.6961	0.33138	0.00017426	-0.66182	-0.00034802	-0.33044	-0.00017376	525.85482904703	128.29	1.7807	127.2	126.73	128.51	-1.0933					95	35	4	0	0	0	0.52083	3	10098	10073;10098;10116		40.573	6.3009	1	248690			30539	8359	25094	25120	33798;33799;33800	33799					0.17324062541752028
LINRPILVL	9	Unmodified	_LINRPILVL_					0	0	0		ENSG00000186765|ENST00000417245|FSCN2;nc|ENSG00000186765|O14926-2|FSCN2	ENSG00000186765|ENST00000417245|FSCN2	ENSG00000186765|ENST00000417245|FSCN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.8551025390625	2	525.855327	1049.6961	-0.17376	-9.1372E-05	-0.049096	-2.5818E-05	-0.22285	-0.00011719	525.8551418394103	128.56	1.8468	127.1	126.69	128.53	-1.4565					98	36	4	0	0	0	0.52083	2	12293	12270;12293		40.573	4.3467	1	322380			30540	8359	25094	25120	33801;33802	33802					0.17324062541752028
LINRTLIGV	9	Unmodified	_LINRTLIGV_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	OvCa99_classI_Rep5	1	499.8222351074219	2	499.821484	997.628415	2.0366	0.001018	0.067143	3.356E-05	2.1038	0.0010515	499.82146915754475	110.48	0.80146	110.48	110.22	111.02	0					33	17	3	0	0	0	0.11171	1	12544	12544		94.006	3.2298	1	717890	+		30541	23199	25095	25121	33803	33803					0.1295061261095043
LINRTLIGV	9	Unmodified	_LINRTLIGV_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	499.821484	997.628415	2.0366	0.001018	0.067143	3.356E-05	2.1038	0.0010515	499.82146915754475	110.48	0.80146	110.48	110.22	111.02	0	0	0	NaN	94.006	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	717890	+		30542	23199	25095	25121							0.1295061261095043
LINTCVFF	8	Unmodified	_LINTCVFF_					0	0	0			REV__tr|A0A7D6ZWE6|A0A7D6ZWE6_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=HZF06_07575PE=4SV=1	REV__tr|A0A7D6ZWE6|A0A7D6ZWE6_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=HZF06_07575PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.8080749511719	2	478.749139	955.483725	1.022	0.00048927	-2.0233	-0.00096864	-1.0013	-0.00047937	478.7481081199068	37.422	0.79905	34.529	34.242	35.041	-2.8925					26	15	2	0	0	0	0.028476	1	1412	1412		31.955	0	1	62171	+		30543	32282	25096	25122	33804	33804					0.004202281394441343
LINYIPKN	8	Unmodified	_LINYIPKN_					0	0	0		ENST00000361846.7_1_1:113068637-113083466:-|nuORF	ENST00000361846.7_1_1:113068637-113083466:-|nuORF	ENST00000361846.7_1_1:113068637-113083466:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	487.78765869140625	2	487.78711	973.559667	-0.68011	-0.00033175	-0.51742	-0.00025239	-1.1975	-0.00058414	487.78717268319804	102.91	1.8832	101.39	100.69	102.57	-1.5211					99	35	5	0	0	0	0.7043	1	7111	7111		42.474	1.9018	1	721970			30544	10805	25097	25123	33805	33805					0.0718294831123103
LIPCKVHTQ	9	Unmodified	_LIPCKVHTQ_					0	0	0		STIL|p.R583Sfs*28|1|0.06|ENSG00000123473|chr1:47280709-47280710|-/A|frameshift_variant;STIL|p.S889Kfs*3|1|0.12|ENSG00000123473|chr1:47263048-47263063|TCTGCCAGCTGGCCAC/-|frameshift_variant;nc|ENSG00000123473|Q15468|STIL;ENSG00000123473|ENST00000371877|STIL;ENST00000433827.2_1_1:47765575-47767319:-|nuORF	STIL|p.R583Sfs*28|1|0.06|ENSG00000123473|chr1:47280709-47280710|-/A|frameshift_variant	STIL|p.R583Sfs*28|1|0.06|ENSG00000123473|chr1:47280709-47280710|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	519.7935180664062	2	519.791869	1037.56919	1.5307	0.00079564	2.0914	0.0010871	3.6221	0.0018827	519.7927708482009	121.53	4.9018	120.5	119.85	124.76	-1.0286					197	93	4	0	0	0	0.2422	1	9282	9282		69.628	2.134	1	827300			30545	3597	25098	25124	33806	33806					0.05190393325119658
LIPDEDYSL	9	Unmodified	_LIPDEDYSL_					0	0	0		nc|ENSG00000164616|Q9UKT6|FBXL21P	nc|ENSG00000164616|Q9UKT6|FBXL21P	nc|ENSG00000164616|Q9UKT6|FBXL21P	MULTI-MSMS	OvCa9_classI_Rep3	3	532.7627563476562	2	532.760955	1063.50736	1.0391	0.00055361	3.0044	0.0016006	4.0435	0.0021542	532.7625453162051	119.44	1.5811	118.41	117.88	119.46	-1.0271					87	31	5	0	0	0	0.46377	1	9084	9084		45.952	7.1458	1	495830			30546	15147	25099	25125	33807	33807					-0.021856796130578005
LIPEEDPNP	9	Unmodified	_LIPEEDPNP_					0	0	0		ENST00000595560.1_1_19:58067392-58071050:-|nuORF	ENST00000595560.1_1_19:58067392-58071050:-|nuORF	ENST00000595560.1_1_19:58067392-58071050:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.2548217773438	2	512.253297	1022.49204	-0.66625	-0.00034129	0.61007	0.00031251	-0.056178	-2.8777E-05	512.253528475125	87.1	2.3549	84.473	83.957	86.312	-2.6269					166	46	5	0	0	0	0.40667	1	7374	7374		51.335	3.3759	1	2034900			30547	14176	25100	25126	33808	33808					-0.01830546410246825
LIPEIPVEY	9	Unmodified	_LIPEIPVEY_					0	0	0		USH2A|p.Y4273Cfs*19|1|0.36|ENSG00000042781|chr1:215675092-215675093|AT/-|frameshift_variant;ENSG00000042781|ENST00000307340|USH2A;nc|ENSG00000042781|O75445-3|USH2A;USH2A|p.A4046Dfs*53|1|0.04|ENSG00000042781|chr1:215680306-215680307|-/T|frameshift_variant	USH2A|p.Y4273Cfs*19|1|0.36|ENSG00000042781|chr1:215675092-215675093|AT/-|frameshift_variant	USH2A|p.Y4273Cfs*19|1|0.36|ENSG00000042781|chr1:215675092-215675093|AT/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.2593383789062	2	536.799883	1071.58521	-1.7587	-0.00094405	0.11988	6.4349E-05	-1.6388	-0.0008797	536.7993747633276	87.44	0.65573	84.814	84.499	85.155	-2.6269					32	12	4	0	0	0	0.027417	1	7408	7408		55.504	16.698	1	66553			30548	1126	25101	25127	33809	33809					0.05228378042988879
LIPFEQYLN	9	Unmodified	_LIPFEQYLN_					0	0	0			REV__tr|A0A553SM03|A0A553SM03_NIACIAminodeoxychorismate/anthranilatesynthasecomponentIIOS=NialliacirculansOX=1397GN=CEQ21_21530PE=4SV=1	REV__tr|A0A553SM03|A0A553SM03_NIACIAminodeoxychorismate/anthranilatesynthasecomponentIIOS=NialliacirculansOX=1397GN=CEQ21_21530PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	568.8026733398438	2	568.802957	1135.59136	1.7948	0.0010209	0.042803	2.4346E-05	1.8376	0.0010452	568.8028966210496	133.51	1.2565	133.51	133.04	134.29	0					75	26	4	0	0	0	0.18193	1	15502	15502		79.451	5.196	1	2657000	+		30549	30284	25102	25128	33810	33810					0.028988962745188473
LIPGRKCW	8	Unmodified	_LIPGRKCW_					0	0	0		ENST00000449870.5_2_19:10802311-10802632:+|nuORF	ENST00000449870.5_2_19:10802311-10802632:+|nuORF	ENST00000449870.5_2_19:10802311-10802632:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.7785949707031	2	486.776022	971.537492	-0.74828	-0.00036425	-0.33093	-0.00016109	-1.0792	-0.00052534	486.7745702836089	28.718	0.25025	28.718	28.588	28.838	0					11	4	3	0	0	0	0.028476	1	964	964		15.636	7.4049	1	14762			30550	12032	25103	25129	33811	33811					0.05058445361805752
LIPHLLGDVV	10	Unmodified	_LIPHLLGDVV_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1;nc|ENSG00000137409|Q9NZJ7-3|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MSMS	OvCa9_classI_Rep3	3	538.3260498046875	2	538.329142	1074.64373	-5.6218	-0.0030264	1.9414	0.0010451	-3.6804	-0.0019813	538.3300395836094	158.87	1.4268	157.61	157.3	158.73	-1.267					79	27	5	0	0	0	0.7759	1	13704	13704		21.96	2.5999	1	528870			30551	4580	25104	25130	33812	33812					0.10939479408125408
LIPIVTKQDAP	11	Unmodified	_LIPIVTKQDAP_					0	0	0			REV__nc|ENSG00000116127|Q8TCU4-2|ALMS1	REV__nc|ENSG00000116127|Q8TCU4-2|ALMS1	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8554077148438	2	597.858264	1193.70197	-3.1766	-0.0018991	0.037639	2.2503E-05	-3.1389	-0.0018766	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.71498	1	14864	14864		24.519	3.5723	1	436470	+		30552	18284	25105	25131	33813	33813					0.11287116262769814
LIPIVTKQDAP	11	Unmodified	_LIPIVTKQDAP_					0	0	0			REV__nc|ENSG00000116127|Q8TCU4-2|ALMS1	REV__nc|ENSG00000116127|Q8TCU4-2|ALMS1	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8560791015625	2	597.858264	1193.70197	-1.9041	-0.0011384	-1.3848	-0.00082789	-3.2889	-0.0019663	597.8573316932594	144.83	3.9651	143.86	141.71	145.68	-0.97301					192	79	4	0	0	0	0.71789	1	12170	12170		23.523	1.5628	1	187110	+		30553	18284	25105	25131	33814	33814					0.11287116262769814
LIPKGTDVIT	10	Unmodified	_LIPKGTDVIT_					0	0	0		ENSG00000197446|ENST00000331105|CYP2F1	ENSG00000197446|ENST00000331105|CYP2F1	ENSG00000197446|ENST00000331105|CYP2F1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.2806396484375	2	528.818607	1055.62266	-0.00079744	-4.217E-07	0.24308	0.00012854	0.24228	0.00012812	528.8179768057557	110.54	1.1573	108.94	108.65	109.8	-1.6011					48	21	4	0	0	0	0.026891	1	10205	10205		31.53	3.6476	1	85233			30554	8713	25106	25132	33815	33815					0.09707469308591499
LIPKGTDVIT	10	Unmodified	_LIPKGTDVIT_					0	0	0		ENSG00000197446|ENST00000331105|CYP2F1	ENSG00000197446|ENST00000331105|CYP2F1	ENSG00000197446|ENST00000331105|CYP2F1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	528.818607	1055.62266	-0.3999	-0.00021147	0.33261	0.00017589	-0.067287	-3.5582E-05	528.8183259019982	109.24	1.0889	109.07	108.62	109.71	-0.17237	0.098768	0.00020964	NaN	24.519	49	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50003			30555	8713	25106	25132							0.09707469308591499
LIPLSLSPF	9	Unmodified	_LIPLSLSPF_					0	0	0			REV__ENST00000398022.6_1_20:30753698-30754259:+|nuORF	REV__ENST00000398022.6_1_20:30753698-30754259:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.7988586425781	2	493.799686	985.584819	1.0759	0.00053127	-4.0737	-0.0020116	-2.9978	-0.0014803	493.7975038763306	35.91	1.1476	33.061	32.74	33.887	-2.849					37	22	3	0	0	0	0.52083	1	1205	1205		40.573	0	1	122010	+		30556	25370	25107	25133	33816	33816					0.09145003113792427
LIPMKKML	8	Unmodified	_LIPMKKML_					0	0	0			REV__ENST00000578137.5_1_17:61864524-61869872:+|nuORF	REV__ENST00000578137.5_1_17:61864524-61869872:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	487.2984313964844	2	487.300484	972.586416	-2.0582	-0.0010029	-1.7599	-0.00085762	-3.8181	-0.0018606	487.29953188884207	145.86	1.1405	145.64	145.18	146.32	-0.22696					53	22	3	0	0	0	0.74679	1	14712	14712		28.254	7.7724	1	104880	+		30557	27800	25108	25134	33817	33817					0.09902597606560448
LIPMLNPLI	9	Unmodified	_LIPMLNPLI_					0	0	0		ENSG00000150261|ENST00000279783|OR8K1	ENSG00000150261|ENST00000279783|OR8K1	ENSG00000150261|ENST00000279783|OR8K1	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.3203735351562	2	512.317189	1022.61982	-1.0918	-0.00055934	4.1948	0.0021491	3.103	0.0015897	512.3192622301821	54.713	1.7342	51.465	51.132	52.866	-3.2474					92	33	4	0	0	0	0.36502	1	3436	3436		55.504	0	1	2084000			30558	5501	25109	25135	33818	33818					0.10941922650090419
LIPNLAMKEV	10	Unmodified	_LIPNLAMKEV_					0	0	0		nc|ENSG00000103266|Q9UNE7-2|STUB1;ENSG00000103266|ENST00000219548|STUB1	nc|ENSG00000103266|Q9UNE7-2|STUB1	nc|ENSG00000103266|Q9UNE7-2|STUB1	MULTI-MSMS	OvCa99_classI_Rep5	1	564.3279418945312	2	564.328285	1126.64202	0.7593	0.0004285	-1.2092	-0.00068238	-0.44989	-0.00025389	564.3275364377719	101.58	1.3122	101.58	100.86	102.17	0					57	30	3	0	0	0	0.3094	1	11300	11300		79.713	2.9384	1	2978400			30559	2302	25110	25136	33819	33819					0.0837610232786119
LIPPNLEPN	9	Unmodified	_LIPPNLEPN_					0	0	0			REV__ENST00000591030.5_1_19:6477238-6481723:-|nuORF	REV__ENST00000591030.5_1_19:6477238-6481723:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	503.7785949707031	2	503.782025	1005.5495	-3.0867	-0.001555	-3.4935	-0.00176	-6.5803	-0.003315	503.78006253314857	36.309	2.2758	33.6	32.75	35.026	-2.7097					126	45	4	0	0	0	0.56889	1	1499	1499		35.618	2.1253	1	296190	+		30560	27926	25111	25137	33820	33820					0.04694340585979262
LIPRASLLL	9	Unmodified	_LIPRASLLL_					0	0	0		ENSG00000242802|ENST00000649063|AP5Z1;ENST00000477680.5_1_7:4829853-4831013:+|nuORF	ENSG00000242802|ENST00000649063|AP5Z1	ENSG00000242802|ENST00000649063|AP5Z1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3340148925781	2	498.334227	994.653902	0.2425	0.00012085	-0.5271	-0.00026267	-0.2846	-0.00014182	498.33387359588454	132.52	1.8753	132.29	131.93	133.81	-0.22696					110	37	5	0	0	0	0.19758	1	13146	13146		76.774	10.345	1	948910			30561	9368	25112	25138	33821	33821					0.15636087133384535
LIPRASLLL	9	Unmodified	_LIPRASLLL_					0	0	0		ENSG00000242802|ENST00000649063|AP5Z1;ENST00000477680.5_1_7:4829853-4831013:+|nuORF	ENSG00000242802|ENST00000649063|AP5Z1	ENSG00000242802|ENST00000649063|AP5Z1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3330078125	2	498.334227	994.653902	1.2643	0.00063007	-1.8659	-0.00092985	-0.60157	-0.00029978	498.3332884380841	124.71	3.4398	123.66	123.27	126.71	-1.0519					179	65	5	0	0	0	0.48324	1	9754	9754		44.117	1.7207	1	3929400			30562	9368	25112	25138	33822	33822					0.15636087133384535
LIPRASLLL	9	Unmodified	_LIPRASLLL_					0	0	0		ENSG00000242802|ENST00000649063|AP5Z1;ENST00000477680.5_1_7:4829853-4831013:+|nuORF	ENSG00000242802|ENST00000649063|AP5Z1	ENSG00000242802|ENST00000649063|AP5Z1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.33489990234375	2	498.334227	994.653902	-1.8174	-0.00090567	1.0953	0.00054583	-0.72208	-0.00035984	498.334772441205	125.12	4.2738	123.72	123.39	127.66	-1.3908					210	84	5	0	0	0	0.18193	1	11892	11892		79.451	2.6769	1	4129000			30563	9368	25112	25138	33823	33823					0.15636087133384535
LIPRSERGGPF	11	Unmodified	_LIPRSERGGPF_					0	0	0		nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L;nc|ENSG00000183530|Q5THK1-3|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	MULTI-MSMS	OvCa9_classI_Rep3	3	410.5662536621094	3	410.231412	1227.67241	3.1217	0.0012806	-0.17148	-7.0346E-05	2.9502	0.0012103	410.2313035138201	55.754	0.6964	52.582	52.231	52.927	-3.1715					38	25	2	0	0	0	0.67814	1	1533	1533		31.634	4.587	1	14971			30564	8082	25113	25139	33824	33824					0.0676759703726475
LIPSDPVFPHP	11	Unmodified	_LIPSDPVFPHP_					0	0	0		ENST00000597960.7_3_19:18642666-18642966:-|nuORF	ENST00000597960.7_3_19:18642666-18642966:-|nuORF	ENST00000597960.7_3_19:18642666-18642966:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	406.21575927734375	3	406.888763	1217.64446	0.0039313	1.5996E-06	0.21801	8.8705E-05	0.22194	9.0304E-05	406.88880204133585	61.356	0.67925	58.597	58.308	58.987	-2.7593					22	12	3	0	0	0	0.026113	1	4525	4525		30.569	6.337	1	28234			30565	14193	25114	25140	33825	33825					0.044342740571892136
LIPSDPVFPHP	11	Unmodified	_LIPSDPVFPHP_					0	0	0		ENST00000597960.7_3_19:18642666-18642966:-|nuORF	ENST00000597960.7_3_19:18642666-18642966:-|nuORF	ENST00000597960.7_3_19:18642666-18642966:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	406.888763	1217.64446	1.1727	0.00047715	-1.4902	-0.00060636	-0.31755	-0.00012921	406.8879583951055	62.169	0.8805	58.712	58.475	59.356	-3.4577	0.057466	-0.00090322	NaN	30.569	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66134			30566	14193	25114	25140							0.044342740571892136
LIPVKNNKV	9	Unmodified	_LIPVKNNKV_					0	0	0		tr|A0A553SIJ6|A0A553SIJ6_NIACIPhzFfamilyphenazinebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_14980PE=4SV=1	tr|A0A553SIJ6|A0A553SIJ6_NIACIPhzFfamilyphenazinebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_14980PE=4SV=1	tr|A0A553SIJ6|A0A553SIJ6_NIACIPhzFfamilyphenazinebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_14980PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	512.8141479492188	2	512.829309	1023.64407	-0.76871	-0.00039422	1.1131	0.00057085	0.34444	0.00017664	512.8307161831974	82.85	0.24785	80.554	80.381	80.629	-2.2963					7	4	2	0	0	0	0.027462	1	4682	4682		12.207	0.69583	1	6230.9			30567	33388	25115	25141	33826	33826					0.13318899127989425
LIPYSNQID	9	Unmodified	_LIPYSNQID_					0	0	0		tr|A0A553SGA8|A0A553SGA8_NIACIDUF1385domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10525PE=4SV=1	tr|A0A553SGA8|A0A553SGA8_NIACIDUF1385domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10525PE=4SV=1	tr|A0A553SGA8|A0A553SGA8_NIACIDUF1385domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10525PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	531.7733154296875	2	531.776939	1061.53933	-0.65085	-0.00034611	-3.6231	-0.0019267	-4.274	-0.0022728	531.7749462054757	37.691	0.45536	37.691	37.485	37.94	0					16	9	2	0	0	0	0.24951	1	2082	2082		68.787	6.6794	1	593540			30568	33136	25116	25142	33827	33827					0.011017328607522359
LIQEELLEK	9	Unmodified	_LIQEELLEK_					0	0	0		nc|ENSG00000122483|Q5T9S5|CCDC18;ENSG00000122483|ENST00000690025|CCDC18;nc|ENSG00000122483|Q5T9S5-2|CCDC18	nc|ENSG00000122483|Q5T9S5|CCDC18	nc|ENSG00000122483|Q5T9S5|CCDC18	MULTI-MSMS	OvCa99_classI_Rep5	1	557.8226928710938	2	557.821347	1113.62814	-1.9693	-0.0010985	-0.40487	-0.00022585	-2.3742	-0.0013244	557.8209368260443	103.9	1.0595	103.9	103.6	104.66	0					54	24	4	0	0	0	0.043101	1	11636	11636		124.08	10.669	1	1288200			30569	3535	25117	25143	33828	33828					0.07587148100446939
LIQERQEII	9	Unmodified	_LIQERQEII_					0	0	0		nc|ENSG00000047346|Q32MH5-3|ATOSA;ENSG00000047346|ENST00000619572|ATOSA;nc|ENSG00000047346|Q32MH5-2|ATOSA	nc|ENSG00000047346|Q32MH5-3|ATOSA	nc|ENSG00000047346|Q32MH5-3|ATOSA	MULTI-MSMS	OvCa9_classI_Rep2	2	571.3329467773438	2	571.332413	1140.65027	-1.5942	-0.00091083	1.4384	0.00082178	-0.15587	-8.9052E-05	571.333039561483	116.37	1.1872	116.24	115.92	117.11	-0.12869					58	23	4	0	0	0	0.24951	1	11124	11124		68.787	2.3575	1	187230			30570	1142	25118	25144	33829	33829					0.08557372568861865
LIQERQEII	9	Unmodified	_LIQERQEII_					0	0	0		nc|ENSG00000047346|Q32MH5-3|ATOSA;ENSG00000047346|ENST00000619572|ATOSA;nc|ENSG00000047346|Q32MH5-2|ATOSA	nc|ENSG00000047346|Q32MH5-3|ATOSA	nc|ENSG00000047346|Q32MH5-3|ATOSA	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	571.332413	1140.65027	-1.1599	-0.00066269	1.3452	0.00076858	0.18534	0.00010589	571.3328176283721	117.47	1.4872	116.44	116.09	117.58	-1.0324	0.075745	4.1523E-05	NaN	68.787	92	29	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214260			30571	1142	25118	25144							0.08557372568861865
LIQETHLDD	9	Unmodified	_LIQETHLDD_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4|ABCA13	REV__nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.6625366210938	2	542.269478	1082.5244	-0.99224	-0.00053806	-3.04	-0.0016485	-4.0322	-0.0021866	542.2675498205476	94.158	0.38895	91.69	91.571	91.96	-2.4685					10	7	2	0	0	0	0.027462	1	8267	8267		34.173	23.907	1	18015	+		30572	22143	25119	25145	33830	33830					-0.013557590072423409
LIQGVVSSFKF	11	Unmodified	_LIQGVVSSFKF_					0	0	0			REV__tr|A0A553SME9|A0A553SME9_NIACIN-methyl-L-tryptophanoxidaseOS=NialliacirculansOX=1397GN=CEQ21_22440PE=4SV=1	REV__tr|A0A553SME9|A0A553SME9_NIACIN-methyl-L-tryptophanoxidaseOS=NialliacirculansOX=1397GN=CEQ21_22440PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	612.8532104492188	2	612.852981	1223.69141	-0.19541	-0.00011976	-3.6474	-0.0022353	-3.8428	-0.0023551	612.8506796067662	96.019	0.91589	93.593	93.304	94.22	-2.4256					59	17	4	0	0	0	0.56391	1	8459	8459		47.96	0.73184	1	462210	+		30573	30322	25120	25146	33831	33831					0.08851133608322925
LIQHEKAHGQ	10	Unmodified	_LIQHEKAHGQ_					0	0	0		ENST00000599227.5_2_19:58774240-58774528:+|nuORF	ENST00000599227.5_2_19:58774240-58774528:+|nuORF	ENST00000599227.5_2_19:58774240-58774528:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.822265625	2	580.812179	1159.60981	-1.2279	-0.00071315	0.16118	9.3616E-05	-1.0667	-0.00061954	580.8121447086526	26.687	0.34964	26.687	26.492	26.841	0					13	6	3	0	0	0	0.027147	1	697	697		21.96	1.013	1	72016			30574	14205	25121	25147	33832	33832					0.03638450969083351
LIQIIVGHL	9	Unmodified	_LIQIIVGHL_					0	0	0		L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|239|2|anti-sense	L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|239|2|anti-sense	L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|239|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	503.3258056640625	2	503.326402	1004.63825	0.14036	7.0648E-05	-0.73987	-0.0003724	-0.59951	-0.00030175	503.32594865659956	112.82	1.9244	112.7	112.28	114.2	-0.12174					111	38	5	0	0	0	0.6653	1	10745	10745		24.203	0	1	946430			30575	14705	25122	25148	33833	33833					0.13611800616320124
LIQLRRKFSI	10	Unmodified	_LIQLRRKFSI_					0	0	0		tr|A0A553STT4|A0A553STT4_NIACITrmBfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_05720PE=4SV=1	tr|A0A553STT4|A0A553STT4_NIACITrmBfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_05720PE=4SV=1	tr|A0A553STT4|A0A553STT4_NIACITrmBfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_05720PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	424.8902893066406	3	425.274952	1272.80303	-0.023451	-9.9731E-06	0.16609	7.0633E-05	0.14264	6.066E-05	425.2748388688253	21.377	1.1807	20.038	19.595	20.776	-1.3386					50	23	3	0	0	0	0.027089	1	152	152		31.634	2.0835	1	40400			30576	34531	25123	25149	33834	33834					0.1775361275610976
LIQLSITKI	9	Unmodified	_LIQLSITKI_					0	0	0			REV__ENST00000508873.1_1_4:24773712-24773916:+|nuORF	REV__ENST00000508873.1_1_4:24773712-24773916:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	514.840087890625	2	514.839342	1027.66413	1.243	0.00063993	1.1149	0.00057397	2.3578	0.0012139	514.839751746187	98.236	0.68399	98.236	97.912	98.596	0					37	15	3	0	0	0	0.46356	1	10837	10837		45.972	0.020292	1	901940	+		30577	26919	25124	25150	33835	33835					0.15140650067928618
LIQLVRFNL	9	Unmodified	_LIQLVRFNL_					0	0	0		ENST00000494454.5_1_22:19864636-19903590:-|nuORF	ENST00000494454.5_1_22:19864636-19903590:-|nuORF	ENST00000494454.5_1_22:19864636-19903590:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	558.8276977539062	2	558.350409	1114.68626	1.8977	0.0010596	-1.4956	-0.00083508	0.40212	0.00022452	558.3490212112183	96.959	2.1119	94.534	94.169	96.281	-2.4256					60	41	3	0	0	0	0.027448	1	8560	8560		44.117	12.162	1	143960			30578	12754	25125	25151	33836	33836					0.1335087453635424
LIQLVRFNL	9	Unmodified	_LIQLVRFNL_					0	0	0		ENST00000494454.5_1_22:19864636-19903590:-|nuORF	ENST00000494454.5_1_22:19864636-19903590:-|nuORF	ENST00000494454.5_1_22:19864636-19903590:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	558.350409	1114.68626	-1.2114	-0.00067638	1.2762	0.00071257	0.064813	3.6189E-05	558.3505048137075	96.346	2.273	94.518	94.075	96.348	-1.8286	-0.0080633	0.001532	NaN	44.117	88	44	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165870			30579	12754	25125	25151							0.1335087453635424
LIQMRPTL	8	Unmodified	_LIQMRPTL_					0	0	0			REV__ENSG00000266074|ENST00000675386|BAHCC1	REV__ENSG00000266074|ENST00000675386|BAHCC1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.2901611328125	2	486.288963	970.563372	-1.3386	-0.00065093	1.302	0.00063316	-0.036553	-1.7776E-05	486.28968430992785	96.173	2.6618	94.345	93.531	96.193	-1.8286					91	52	2	0	0	0	0.65582	2	6336	6336;6344		52.299	2.2746	1	3287800	+		30580	23585	25126	25152	33837;33838	33837					0.07691294813446348
LIQNDLLLPTV	11	Unmodified	_LIQNDLLLPTV_					0	0	0			REV__nc|ENSG00000106278|P23471-2|PTPRZ1	REV__nc|ENSG00000106278|P23471-2|PTPRZ1	MULTI-MSMS	OvCa9_classI_Rep2	2	619.868408203125	2	619.871371	1237.72819	-3.8587	-0.0023919	0.76872	0.00047651	-3.09	-0.0019154	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.71498	1	15200	15200		24.519	0	1	492670	+		30581	17788	25127	25153	33839	33839					0.11883385434202864
LIQQLLELE	9	Unmodified	_LIQQLLELE_					0	0	0			REV__tr|A0A7D6VMI1|A0A7D6VMI1_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13830PE=4SV=1	REV__tr|A0A7D6VMI1|A0A7D6VMI1_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13830PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.2828979492188	2	549.823889	1097.63323	-1.316	-0.00072359	3.1215	0.0017163	1.8054	0.00099267	550.3276160449808	43.674	0.34473	43.674	43.521	43.866	0					10	7	2	0	0	0	0.027462	1	2884	2884		29.15	0	1	125600	+		30582	31134	25128	25154	33840	33840					0.08831451963033032
LIQQLLPIN	9	Unmodified	_LIQQLLPIN_					0	0	0			REV__ENSG00000204569|ENST00000376511|PPP1R10	REV__ENSG00000204569|ENST00000376511|PPP1R10	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.8574829101562	2	526.329142	1050.64373	0.96315	0.00050693	1.5264	0.0008034	2.4896	0.0013103	526.3298232937422	145.43	0.69275	145.43	145.13	145.83	0					26	14	2	0	0	0	0.027462	1	17027	17027		40.573	2.7611	1	56703	+		30583	23168	25129	25155	33841	33841					0.12043479408157509
LIQQTITPA	9	Unmodified	_LIQQTITPA_					0	0	0		nc|ENSG00000165246|Q8NFZ3|NLGN4Y;ENSG00000165246|ENST00000684976|NLGN4Y;nc|ENSG00000165246|Q8NFZ3-2|NLGN4Y;ENSG00000146938|ENST00000381095|NLGN4X;nc|ENSG00000146938|Q8N0W4-2|NLGN4X	nc|ENSG00000165246|Q8NFZ3|NLGN4Y	nc|ENSG00000165246|Q8NFZ3|NLGN4Y	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.2890319824219	2	492.78985	983.565146	0.0144	7.0963E-06	-0.30984	-0.00015268	-0.29544	-0.00014559	492.789442569581	57.544	0.51072	57.544	57.264	57.775	0					19	11	2	0	0	0	0.027447	1	4813	4813		47.657	5.2612	1	1271400			30584	6540	25130	25156	33842	33842					0.07270627103036986
LIQRAQIGR	9	Unmodified	_LIQRAQIGR_					0	0	0			REV__nc|ENSG00000003137|Q9NR63-2|CYP26B1	REV__nc|ENSG00000003137|Q9NR63-2|CYP26B1	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.8639526367188	2	527.827632	1053.64071	-1.1137	-0.00058786	1.5547	0.0008206	0.44094	0.00023274	527.8272932219752	103.62	0.46598	103.62	103.43	103.89	0					16	10	2	0	0	0	0.027462	1	11626	11626		24.203	1.1603	1	222320	+		30585	16369	25131	25157	33843	33843					0.11603649074004352
LIQRLICSRER	11	Unmodified	_LIQRLICSRER_					0	0	0		CDC42BPB|p.S1423Ffs*2|1|0.11|ENSG00000198752|chr14:102944030-102944031|AG/-|frameshift_variant;ENSG00000198752|ENST00000361246|CDC42BPB	CDC42BPB|p.S1423Ffs*2|1|0.11|ENSG00000198752|chr14:102944030-102944031|AG/-|frameshift_variant	CDC42BPB|p.S1423Ffs*2|1|0.11|ENSG00000198752|chr14:102944030-102944031|AG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	462.9364013671875	3	462.938122	1385.79254	0.079191	3.666E-05	-3.3354	-0.0015441	-3.2562	-0.0015074	462.9367014144655	44.408	4.3763	41.698	41.303	45.679	-2.7097					263	87	6	0	0	0	0.66539	1	2517	2517		38.714	1.1142	1	4456400			30586	208	25132	25158	33844	33844					0.11507262039390298
LIQRWFIRKWA	11	Unmodified	_LIQRWFIRKWA_					0	0	0			REV__ENSG00000184389|ENST00000442999|A3GALT2	REV__ENSG00000184389|ENST00000442999|A3GALT2	MULTI-MSMS	OvCa99_classI_Rep5	1	506.3036193847656	3	506.301501	1515.88267	-0.31202	-0.00015797	3.8074	0.0019277	3.4954	0.0017697	506.6378963623321	23.584	0.79251	23.584	23.144	23.937	0					21	15	3	0	0	0	0.7257	1	364	364		6.3209	0.6221	1	52353	+		30587	22427	25133	25159	33845	33845					0.14536679430102595
LIQSKSSSII	10	Unmodified	_LIQSKSSSII_					0	0	0			REV__ENSG00000145390|ENST00000692078|USP53	REV__ENSG00000145390|ENST00000692078|USP53	MULTI-SECPEP	OvCa9_classI_Rep3	3	537.8047485351562	2	538.321514	1074.62847	0.65559	0.00035292	-1.8701	-0.0010067	-1.2145	-0.00065378	538.3199958751703	74.347	0.64314	71.936	71.598	72.241	-2.4106					20	12	3	0	0	0	0.026659	1	3656	3656		45.972	0	1	22709	+		30588	19963	25134	25160	33846	33846					0.09414567820294906
LIQTTALLI	9	Unmodified	_LIQTTALLI_					0	0	0			REV__nc|ENSG00000178852|Q8IY85-2|EFCAB13	REV__nc|ENSG00000178852|Q8IY85-2|EFCAB13	MULTI-MSMS	OvCa9_classI_Rep2	2	493.3178405761719	2	493.318243	984.621933	0.61838	0.00030506	-0.65148	-0.00032139	-0.033099	-1.6328E-05	493.31777001150425	123.45	1.971	123.21	122.89	124.86	-0.23193					97	39	4	0	0	0	0.11171	2	11971	11971;12000		94.006	14.555	1	599460	+		30589	22084	25135	25161	33847;33848	33847					0.12900674659567812
LIQTTALLI	9	Unmodified	_LIQTTALLI_					0	0	0			REV__nc|ENSG00000178852|Q8IY85-2|EFCAB13	REV__nc|ENSG00000178852|Q8IY85-2|EFCAB13	MULTI-MATCH	OvCa99_classI_Rep5	1		2	493.318243	984.621933	1.3597	0.00067076	0.80009	0.0003947	2.1598	0.0010655	493.3180963208187	122.96	0.37082	122.96	122.81	123.18	0	-0.24236	0.0011425	NaN	94.006	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31964	+		30590	22084	25135	25161							0.12900674659567812
LIQVEDSLELL	11	Unmodified	_LIQVEDSLELL_					0	0	0			REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-MSMS	OvCa99_classI_Rep5	1	636.3609619140625	2	636.358293	1270.70203	1.3816	0.00087922	2.0683	0.0013162	3.45	0.0021954	636.3594340656	123.82	1.6528	123.82	122.68	124.33	0					60	35	3	0	0	0	0.56391	1	14294	14294		47.96	2.9373	1	476410	+		30591	19851	25136	25162	33849	33849					0.07751071472102922
LIRCGLRTPPL	11	Unmodified	_LIRCGLRTPPL_					0	0	0			REV__ENST00000477837.5_1_1:157646504-157648450:-|nuORF	REV__ENST00000477837.5_1_1:157646504-157648450:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8683471679688	2	619.873725	1237.7329	-3.8587	-0.0023919	-3.029	-0.0018776	-6.8877	-0.0042695	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.67529	1	15447	15447		37.812	8.6415	1	492670	+		30592	26396	25137	25163	33850	33850					0.12353991096006212
LIRDYFLN	8	Unmodified	_LIRDYFLN_					0	0	0		tr|A0A553SQU7|A0A553SQU7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07310PE=4SV=1	tr|A0A553SQU7|A0A553SQU7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07310PE=4SV=1	tr|A0A553SQU7|A0A553SQU7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07310PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	527.3558959960938	2	527.290017	1052.56548	-1.5019	-0.00079192	-2.249	-0.0011859	-3.7509	-0.0019778	527.2880910313626	83.778	1.4899	81.517	80.917	82.407	-2.261					67	31	3	0	0	0	0.028476	1	4921	4921		26.796	0	1	57666			30593	34199	25138	25164	33851	33851					0.04130046822888289
LIRDYFLN	8	Unmodified	_LIRDYFLN_					0	0	0		tr|A0A553SQU7|A0A553SQU7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07310PE=4SV=1	tr|A0A553SQU7|A0A553SQU7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07310PE=4SV=1	tr|A0A553SQU7|A0A553SQU7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07310PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	527.290017	1052.56548	0.039411	2.0781E-05	-3.971	-0.0020939	-3.9316	-0.0020731	527.7878780223804	84.416	1.1285	81.754	81.167	82.295	-2.6629	0.11841	-0.0009599	NaN	26.796	35	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47274			30594	34199	25138	25164							0.04130046822888289
LIREALLFY	9	Unmodified	_LIREALLFY_					0	0	0			REV__SNRK|p.T715Lfs*6|1|0.32|ENSG00000163788|chr3:43348400-43348403|CCAC/-|frameshift_variant	REV__SNRK|p.T715Lfs*6|1|0.32|ENSG00000163788|chr3:43348400-43348403|CCAC/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.3192138671875	2	569.336967	1136.65938	1.4273	0.00081262	0.78734	0.00044826	2.2146	0.0012609	569.3370532522111	83.591	0.62943	83.591	83.335	83.965	0					29	14	3	0	0	0	0.027462	1	8676	8676		34.173	9.9698	1	732150	+		30595	20886	25139	25165	33852	33852					0.09651765925173095
LIRESIGNLD	10	Unmodified	_LIRESIGNLD_					0	0	0			REV__nc|ENSG00000179873|P59045-3|NLRP11	REV__nc|ENSG00000179873|P59045-3|NLRP11	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.2978515625	2	565.31422	1128.61389	0.65395	0.00036969	1.0379	0.00058672	1.6918	0.00095641	565.3145362998407	104.57	0.93593	102.46	102.06	103	-2.1192					32	17	3	0	0	0	0.026994	1	9527	9527		19.104	0	1	91974	+		30596	22144	25140	25166	33853	33853					0.05472495672142941
LIRESIGNLD	10	Unmodified	_LIRESIGNLD_					0	0	0			REV__nc|ENSG00000179873|P59045-3|NLRP11	REV__nc|ENSG00000179873|P59045-3|NLRP11	MULTI-MATCH	OvCa9_classI_Rep3	3		2	565.31422	1128.61389	0.071535	4.044E-05	1.1645	0.00065832	1.2361	0.00069876	565.3140660269287	103.92	0.89131	102.49	101.97	102.86	-1.4347	0.015232	0.00010777	NaN	19.104	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85111	+		30597	22144	25140	25166							0.05472495672142941
LIREWLEQL	9	Unmodified	_LIREWLEQL_					0	0	0			REV__ENST00000401950.6_1_22:30418680-30421651:+|nuORF	REV__ENST00000401950.6_1_22:30418680-30421651:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	600.3629760742188	2	600.342781	1198.67101	-0.49752	-0.00029868	-1.2256	-0.00073578	-1.7231	-0.0010345	600.3418850685193	25.794	0.39916	25.794	25.643	26.042	0					14	7	3	0	0	0	0.027462	1	617	617		44.117	17.424	1	43208	+		30598	25416	25141	25167	33854	33854					0.07961962948502332
LIRFCINFVIL	11	Unmodified	_LIRFCINFVIL_					0	0	0		tr|A0A553SFV1|A0A553SFV1_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09525PE=4SV=1	tr|A0A553SFV1|A0A553SFV1_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09525PE=4SV=1	tr|A0A553SFV1|A0A553SFV1_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09525PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	450.9368591308594	3	450.93706	1349.78935	1.6146	0.00072808	-1.9405	-0.00087502	-0.32586	-0.00014694	450.9360997934693	63.19	1.2421	60.156	59.756	60.998	-3.0339					70	24	4	0	0	0	0.72472	1	2379	2379		19.263	2.0959	1	192240			30599	33080	25142	25168	33855	33855					0.12844618932672347
LIRFTKIE	8	Unmodified	_LIRFTKIE_					0	0	0			REV__tr|A0A553SR98|A0A553SR98_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00710PE=3SV=1	REV__tr|A0A553SR98|A0A553SR98_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00710PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	510.3152160644531	2	510.316035	1018.61752	1.0432	0.00053237	1.7097	0.0008725	2.7529	0.0014049	510.316600509876	124.41	0.50308	124.41	124.06	124.56	0					21	10	3	0	0	0	0.48084	1	14363	14363		79.451	5.196	1	161710	+		30600	30708	25143	25169	33856	33856					0.10895210236651565
LIRGHTETI	9	Unmodified	_LIRGHTETI_					0	0	0		tr|A0A7D6VRE8|A0A7D6VRE8_9CLOTPadRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_00600PE=4SV=1	tr|A0A7D6VRE8|A0A7D6VRE8_9CLOTPadRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_00600PE=4SV=1	tr|A0A7D6VRE8|A0A7D6VRE8_9CLOTPadRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_00600PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.316650390625	2	520.298373	1038.58219	2.0573	0.0010704	3.3344	0.0017349	5.3917	0.0028053	520.3004260949111	86.721	0.50116	86.721	86.471	86.972	0					33	11	4	0	0	0	0.027455	1	9180	9180		60.972	13.056	1	1643000			30601	34923	25144	25170	33857	33857					0.06444547708861137
LIRILPIN	8	Unmodified	_LIRILPIN_					0	0	0		FANCB|p.K829Sfs*12|1|0.15|ENSG00000181544|chrX:14843663-14843664|-/GAGAGGGAGATAAAATGGCCCTAGTTGAG|frameshift_variant;ENSG00000181544|ENST00000650831|FANCB	FANCB|p.K829Sfs*12|1|0.15|ENSG00000181544|chrX:14843663-14843664|-/GAGAGGGAGATAAAATGGCCCTAGTTGAG|frameshift_variant	FANCB|p.K829Sfs*12|1|0.15|ENSG00000181544|chrX:14843663-14843664|-/GAGAGGGAGATAAAATGGCCCTAGTTGAG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.79498291015625	2	476.32112	950.627687	0.66491	0.00031671	-1.4837	-0.0007067	-0.81875	-0.00038999	476.3204652099647	111.98	1.4978	110.46	109.89	111.39	-1.5111					74	28	4	0	0	0	0.028476	1	10352	10352		20.482	0	1	56300			30602	7936	25145	25171	33858	33858					0.15039817961894641
LIRKNSVQP	9	Unmodified	_LIRKNSVQP_					0	0	0		tr|A0A553SMH8|A0A553SMH8_NIACIAlpha-glucosidase/alpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_22510PE=3SV=1	tr|A0A553SMH8|A0A553SMH8_NIACIAlpha-glucosidase/alpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_22510PE=3SV=1	tr|A0A553SMH8|A0A553SMH8_NIACIAlpha-glucosidase/alpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_22510PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	527.2821044921875	2	527.822015	1053.62948	-1.2357	-0.00065224	-2.0573	-0.0010859	-3.293	-0.0017381	527.8223442327313	76.766	0.78558	74.395	74.138	74.924	-2.3715					33	14	4	0	0	0	0.027462	1	3969	3969		51.335	6.8044	1	73786			30603	33835	25146	25172	33859	33859					0.10480826979846825
LIRLNPVKR	9	Unmodified	_LIRLNPVKR_					0	0	0			REV__DGKI|p.V482Pfs*14|1|0.17|ENSG00000157680|chr7:137585267-137585328|AGGTTCCAGCGATCTAGCTGTACAACTGTCCCATCTTCCACTTGACACAGGATCTTAGAAAC/-|frameshift_variant	REV__DGKI|p.V482Pfs*14|1|0.17|ENSG00000157680|chr7:137585267-137585328|AGGTTCCAGCGATCTAGCTGTACAACTGTCCCATCTTCCACTTGACACAGGATCTTAGAAAC/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	554.8689575195312	2	554.8693	1107.72405	-1.9281	-0.0010698	1.7342	0.00096224	-0.19392	-0.0001076	554.8701070642081	36.184	1.0367	33.474	33.251	34.287	-2.7097					47	20	3	0	0	0	0.59983	1	1529	1529		31.955	4.0726	1	161970	+		30604	16290	25147	25173	33860	33860					0.17449385521831573
LIRLPALK	8	Unmodified	_LIRLPALK_					0	0	0			REV__ENST00000467155.6_1_17:46683509-46683713:+|nuORF	REV__ENST00000467155.6_1_17:46683509-46683713:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	462.323974609375	2	462.323663	922.632772	0.31728	0.00014669	-0.44559	-0.00020601	-0.12831	-5.9321E-05	462.32333321447794	81.386	1.7539	79.737	79.415	81.169	-1.6485					91	33	4	0	0	0	0.74971	1	6918	6918		26.796	1.3459	1	679600	+		30605	26198	25148	25174	33861	33861					0.16836121824485417
LIRLVNCGFV	10	Unmodified	_LIRLVNCGFV_					0	0	0			REV__ENSG00000182093|ENST00000649170|GET1	REV__ENSG00000182093|ENST00000649170|GET1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3292846679688	2	567.328619	1132.64269	-2.3399	-0.0013275	4.3821	0.0024861	2.0422	0.0011586	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.69986	1	14471	14471		30.504	3.8107	1	241060	+		30606	22261	25149	25175	33862	33862					0.08166941767558455
LIRLVNLL	8	Unmodified	_LIRLVNLL_					0	0	0		tr|A0A553SQ09|A0A553SQ09_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15360PE=4SV=1	tr|A0A553SQ09|A0A553SQ09_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15360PE=4SV=1	tr|A0A553SQ09|A0A553SQ09_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15360PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	477.3299255371094	2	477.328945	952.643337	1.622	0.00077423	0.073482	3.5075E-05	1.6955	0.00080931	477.328826007664	130.28	1.3788	130.28	130.01	131.39	0					54	28	3	0	0	0	0.61758	1	15125	15125		60.294	0	1	357090			30607	34103	25150	25176	33863	33863					0.16512104478943002
LIRMPEPNI	9	Unmodified	_LIRMPEPNI_					0	0	0			REV__ENSG00000165152|ENST00000374848|PGAP4	REV__ENSG00000165152|ENST00000374848|PGAP4	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.8052978515625	2	541.804977	1081.5954	-1.3029	-0.00070592	0.49692	0.00026923	-0.80598	-0.00043669	541.8052691155432	80.327	1.6539	77.616	76.791	78.445	-2.7106					68	33	5	0	0	0	0.40667	1	6544	6544		51.335	8.9393	1	758010	+		30608	21061	25151	25177	33864	33864					0.05786662496598183
LIRMPEPNI	9	Unmodified	_LIRMPEPNI_					0	0	0			REV__ENSG00000165152|ENST00000374848|PGAP4	REV__ENSG00000165152|ENST00000374848|PGAP4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	541.804977	1081.5954	0.46981	0.00025455	-1.1139	-0.00060352	-0.6441	-0.00034898	541.8042793811118	80.195	1.3271	77.855	77.612	78.939	-2.3399	0.13898	-0.00090818	NaN	51.335	63	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	681600	+		30609	21061	25151	25177							0.05786662496598183
LIRMVFQQV	9	Unmodified	_LIRMVFQQV_					0	0	0		ENST00000523170.5_1_8:66582187-66594293:+|nuORF;ENST00000522239.5_1_8:66582187-66594598:+|nuORF;nc|ENSG00000066855|Q15390-2|MTFR1;ENSG00000066855|ENST00000262146|MTFR1;ENST00000424808.6_1_8:66582187-66620357:+|nuORF	ENST00000523170.5_1_8:66582187-66594293:+|nuORF	ENST00000523170.5_1_8:66582187-66594293:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3295288085938	2	567.328619	1132.64269	-0.48412	-0.00027465	2.6482	0.0015024	2.1641	0.0012278	567.3299446868054	145.54	4.8872	144.11	142.68	147.57	-1.4357					247	95	4	0	0	0	0.6653	1	14440	14440		24.203	1.1603	1	208760			30610	1361	25152	25178	33865	33865					0.08166941767581193
LIRPRLLLL	9	Unmodified	_LIRPRLLLL_					0	0	0		ENST00000374023.7_2_6:34556295-34556346:-|nuORF	ENST00000374023.7_2_6:34556295-34556346:-|nuORF	ENST00000374023.7_2_6:34556295-34556346:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.3148193359375	2	553.892244	1105.76993	0.46042	0.00025502	0.50685	0.00028074	0.96727	0.00053576	553.8926992066945	114.73	0.64513	114.73	114.38	115.02	0					18	13	2	0	0	0	0.027462	1	13133	13133		25.45	0	1	62110			30611	11023	25153	25179	33866	33866					0.22128030704084267
LIRPSALEP	9	Unmodified	_LIRPSALEP_					0	0	0		ENST00000448549.1_1_7:23571439-23571577:-|nuORF	ENST00000448549.1_1_7:23571439-23571577:-|nuORF	ENST00000448549.1_1_7:23571439-23571577:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.3336181640625	2	498.297842	994.581131	1.2758	0.00063574	-2.5375	-0.0012644	-1.2617	-0.0006287	498.2965673080549	124.82	0.20951	123.77	123.69	123.9	-1.0519					5	3	2	0	0	0	0.027411	1	9682	9682		64.207	27.048	1	21988			30612	12021	25154	25180	33867	33867					0.08362333339948691
LIRPTVLLA	9	Unmodified	_LIRPTVLLA_					0	0	0			REV__nc|ENSG00000078269|O15056-3|SYNJ2	REV__nc|ENSG00000078269|O15056-3|SYNJ2	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3330078125	2	498.334227	994.653902	1.2643	0.00063007	-1.8659	-0.00092985	-0.60157	-0.00029978	498.3332884380841	124.71	3.4398	123.66	123.27	126.71	-1.0519					179	65	5	0	0	0	0.42676	1	9779	9779		49.442	1.7842	1	3929400	+		30613	17022	25155	25181	33868	33868					0.15636087133373167
LIRPVSASF	9	Unmodified	_LIRPVSASF_					0	0	0		ENST00000513781.5_1_17:46970480-46973128:+|nuORF;ENST00000502964.5_1_17:46971694-46973128:+|nuORF;ENSG00000159199|ENST00000393366|ATP5MC1	ENST00000513781.5_1_17:46970480-46973128:+|nuORF	ENST00000513781.5_1_17:46970480-46973128:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.2939453125	2	495.292559	988.570566	-1.2589	-0.00062353	0.88162	0.00043666	-0.37728	-0.00018687	495.29279533023714	88.745	1.0452	86.143	85.679	86.725	-2.6027					36	20	2	0	0	0	0.11471	1	7587	7587		93.195	10.89	1	328800			30614	5991	25156	25182	33869	33869					0.07582350685515848
LIRQKLPDNL	10	Unmodified	_LIRQKLPDNL_					0	0	0			REV__tr|A0A7D6VSM3|A0A7D6VSM3_9CLOTLysine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=lysSPE=3SV=1	REV__tr|A0A7D6VSM3|A0A7D6VSM3_9CLOTLysine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=lysSPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	605.370849609375	2	605.36933	1208.72411	1.9891	0.0012041	-2.1449	-0.0012984	-0.15579	-9.4313E-05	605.3673649121051	126.33	1.5624	126.33	125.67	127.23	0					85	33	4	0	0	0	0.55109	1	14577	14577		47.96	5.0953	1	1394000	+		30615	31520	25157	25183	33870	33870					0.1280934073120079
LIRRADFKSY	10	Unmodified	_LIRRADFKSY_					0	0	0		ENST00000354940.10_1_12:104681119-104705098:+|nuORF	ENST00000354940.10_1_12:104681119-104705098:+|nuORF	ENST00000354940.10_1_12:104681119-104705098:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	634.8590087890625	2	634.859129	1267.70371	0.91743	0.00058244	-2.2393	-0.0014216	-1.3218	-0.00083918	634.8576710032044	97.52	2.7566	95.141	94.708	97.465	-2.3786					143	53	5	0	0	0	0.44431	1	8627	8627		62.107	0	1	2559000			30616	10669	25158	25184	33871	33871					0.08056170071358792
LIRRLHSH	8	Unmodified	_LIRRLHSH_					0	0	0		nc|ENSG00000096070|Q9ULD4-3|BRPF3;nc|ENSG00000096070|Q9ULD4-2|BRPF3;ENSG00000096070|ENST00000357641|BRPF3	nc|ENSG00000096070|Q9ULD4-3|BRPF3	nc|ENSG00000096070|Q9ULD4-3|BRPF3	MULTI-MSMS	OvCa9_classI_Rep2	2	516.3138427734375	2	516.314692	1030.61483	-4.2539	-0.0021964	2.7446	0.0014171	-1.5093	-0.00077928	516.3160035152533	156.4	1.1562	156.18	155.89	157.05	-0.22696					77	28	5	0	0	0	0.73288	1	15922	15922		35.201	1.6851	1	397210			30617	1944	25159	25185	33872	33872					0.10074799622361752
LIRRQAERRGW	11	Unmodified	_LIRRQAERRGW_					0	0	0		ENST00000486462.1_1_22:17618913-17622310:-|nuORF;ENST00000477157.5_1_22:17618913-17622310:-|nuORF;nc|ENSG00000069998|Q9BXW7-2|HDHD5;ENSG00000069998|ENST00000336737|HDHD5	ENST00000486462.1_1_22:17618913-17622310:-|nuORF	ENST00000486462.1_1_22:17618913-17622310:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.2510681152344	3	480.948009	1439.8222	-0.2198	-0.00010571	2.8393	0.0013655	2.6195	0.0012598	480.94910863845115	42.829	0.56068	42.829	42.539	43.1	0					17	12	2	0	0	0	0.026344	1	2801	2801		14.086	4.4399	1	110410			30618	1413	25160	25186	33873	33873					0.11987962099715332
LIRRRHGP	8	Unmodified	_LIRRRHGP_					0	0	0			REV__nc|ENSG00000186635|Q96P48-3|ARAP1	REV__nc|ENSG00000186635|Q96P48-3|ARAP1	MULTI-MSMS	OvCa9_classI_Rep2	2	502.8130187988281	2	502.814859	1003.61517	-4.451	-0.0022381	2.8975	0.0014569	-1.5535	-0.00078113	502.8162192928447	153.83	1.4178	153.6	153.28	154.7	-0.22696					88	30	4	0	0	0	0.74816	1	15738	15738		15.636	0.77134	1	684970	+		30619	22603	25161	25187	33874	33874					0.11350219342227774
LIRRYLLLV	9	Unmodified	_LIRRYLLLV_					0	0	0			REV__ENST00000521961.1_1_6:90347059-90348185:-|nuORF	REV__ENST00000521961.1_1_6:90347059-90348185:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.30859375	2	579.889701	1157.76485	2.4072	0.0013959	-0.68786	-0.00039888	1.7193	0.00099701	579.8890379502521	89.419	0.28148	89.419	89.275	89.556	0					11	6	2	0	0	0	0.027433	1	9560	9560		57.811	2.3071	1	196870	+		30620	17096	25162	25188	33875	33875					0.1922772684145002
LIRSQAHELKA	11	Unmodified	_LIRSQAHELKA_					0	0	0			REV__nc|ENSG00000140481|Q8N5R6-2|CCDC33	REV__nc|ENSG00000140481|Q8N5R6-2|CCDC33	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3693237304688	2	633.369861	1264.72517	-4.8824	-0.0030923	3.9881	0.002526	-0.89421	-0.00056637	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.71789	1	13170	13170		23.523	0.94304	1	765700	+		30621	28895	25163	25189	33876	33876					0.1033955510006308
LIRVDDPT	8	Unmodified	_LIRVDDPT_					0	0	0			REV__ENST00000465558.5_1_2:219612840-219617731:+|nuORF	REV__ENST00000465558.5_1_2:219612840-219617731:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	464.7590637207031	2	464.758549	927.502546	-0.37967	-0.00017645	-0.022364	-1.0394E-05	-0.40203	-0.00018685	464.7586046781556	53.791	1.6311	53.791	53.519	55.15	0					100	38	5	0	0	0	0.56195	1	4343	4343		71.296	0	1	9336200	+		30622	19333	25164	25190	33877	33877					0.03589481034839537
LIRVENKF	8	Unmodified	_LIRVENKF_					0	0	0		nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8028869628906	2	509.805834	1017.59712	-0.41042	-0.00020923	-3.6368	-0.0018541	-4.0473	-0.0020633	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.74679	1	13691	13691		28.254	1.4582	1	150140			30623	3916	25165	25191	33878	33878					0.08902039576844345
LIRVNLVSF	9	Unmodified	_LIRVNLVSF_					0	0	0			REV__ENST00000558551.1_1_14:103803061-103803187:+|nuORF	REV__ENST00000558551.1_1_14:103803061-103803187:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.7880249023438	2	530.829309	1059.64407	-2.5769	-0.0013679	1.5398	0.00081737	-1.0371	-0.00055054	530.830046279094	87.677	0.6044	85.05	84.748	85.353	-2.6269					20	11	2	0	0	0	0.027462	1	7455	7455		18.324	4.1873	1	20101	+		30624	27587	25166	25192	33879	33879					0.11662899127986748
LIRVNMEDL	9	Unmodified	_LIRVNMEDL_					0	0	0		nc|ENSG00000164402|Q92599-3|SEPTIN8;nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8;ENSG00000164402|ENST00000378719|SEPTIN8;ENST00000506047.1_1_4:77936059-77941836:+|nuORF;ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;ENSG00000138758|ENST00000264893|SEPTIN11;nc|ENSG00000138758|Q9NVA2-2|SEPTIN11	nc|ENSG00000164402|Q92599-3|SEPTIN8;ENSG00000125354|ENST00000394610|SEPTIN6;ENSG00000138758|ENST00000264893|SEPTIN11	ENSG00000138758|ENST00000264893|SEPTIN11	MULTI-MSMS	OvCa99_classI_Rep5	1	551.801025390625	2	551.799891	1101.58523	2.185	0.0012057	-1.0673	-0.00058894	1.1177	0.00061676	551.7995699255819	102.22	0.59384	102.22	102	102.59	0					39	13	4	0	0	0	0.018335	1	11390	11390		148.99	28.366	1	836490			30625	3701;4722;6453	25167	25193	33880	33880					0.03850054771351097
LIRVRPQLR	9	Unmodified	_LIRVRPQLR_					0	0	0			REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8804321289062	2	575.880199	1149.74584	2.6187	0.0015081	-0.52451	-0.00030205	2.0942	0.001206	575.8797536026407	130.77	1.5941	129.29	128.86	130.45	-1.4779					88	32	4	0	0	0	0.6653	1	12588	12588		24.203	1.1603	1	237440	+		30626	17136	25168	25194	33881	33881					0.1769619027038516
LIRYIVLE	8	Unmodified	_LIRYIVLE_					0	0	0		nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	nc|ENSG00000174953|Q9H2U1-3|DHX36	nc|ENSG00000174953|Q9H2U1-3|DHX36	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.8204040527344	2	509.81841	1017.62227	-0.40336	-0.00020564	0.24299	0.00012388	-0.16037	-8.1758E-05	509.818396147904	123.54	1.1963	122.17	121.9	123.1	-1.3666					47	23	3	0	0	0	0.45246	1	11702	11702		82.305	5.5309	1	110440			30627	7503	25169	25195	33882	33882					0.11416094379410424
LISASNLKIN	10	Unmodified	_LISASNLKIN_					0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.806884765625	2	536.821681	1071.62881	-1.9233	-0.0010325	-3.2573	-0.0017486	-5.1806	-0.0027811	536.8192740940445	67.972	2.1328	65.311	65.189	67.321	-2.661					47	42	2	0	0	0	0.02658	1	5560	5560		54.776	26.695	1	97041	+		30628	19028	25170	25196	33883	33883					0.09585987540140195
LISASNLKIN	10	Unmodified	_LISASNLKIN_					0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.2689208984375	2	536.821681	1071.62881	-1.1911	-0.00063942	-0.23057	-0.00012378	-1.4217	-0.00076319	536.8219919042232	62.763	0.63004	59.306	59.061	59.691	-3.4577					19	12	2	0	0	0	0.026956	1	4421	4421		19.997	0	1	55095	+		30629	19028	25170	25196	33884	33884					0.09585987540140195
LISASNLKIN	10	Unmodified	_LISASNLKIN_					0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	536.821681	1071.62881	-1.0177	-0.00054633	0.038351	2.0588E-05	-0.97937	-0.00052575	536.8224778761817	68.89	0.93202	65.4	65.212	66.144	-3.4902	0.044244	0.0029352	NaN	54.776	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152260	+		30630	19028	25170	25196							0.09585987540140195
LISEDKLPK	9	Unmodified	_LISEDKLPK_					0	0	0		tr|A0A553SF73|A0A553SF73_NIACIMaltodextrin-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_08390PE=3SV=1	tr|A0A553SF73|A0A553SF73_NIACIMaltodextrin-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_08390PE=3SV=1	tr|A0A553SF73|A0A553SF73_NIACIMaltodextrin-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_08390PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.8121337890625	2	521.810782	1041.60701	2.003	0.0010452	-2.6244	-0.0013694	-0.62138	-0.00032424	521.8093311457433	136.48	0.77603	134.94	134.69	135.47	-1.5437					33	15	3	0	0	0	0.38529	1	13248	13248		53.351	2.016	1	46475			30631	33000	25171	25197	33885	33885					0.0878718279154782
LISEGTNIID	10	Unmodified	_LISEGTNIID_					0	0	0		tr|A0A7D6VP50|A0A7D6VP50_9CLOTTypeIIIpantothenatekinaseOS=ClostridiumintestinaleOX=36845GN=coaXPE=3SV=1	tr|A0A7D6VP50|A0A7D6VP50_9CLOTTypeIIIpantothenatekinaseOS=ClostridiumintestinaleOX=36845GN=coaXPE=3SV=1	tr|A0A7D6VP50|A0A7D6VP50_9CLOTTypeIIIpantothenatekinaseOS=ClostridiumintestinaleOX=36845GN=coaXPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.86181640625	2	537.787504	1073.56045	1.9341	0.0010401	0.54786	0.00029463	2.482	0.0013348	537.7874569691526	96.911	0.64099	96.911	96.584	97.225	0					30	14	3	0	0	0	0.026867	1	10612	10612		35.152	10.633	1	692590			30632	34749	25172	25198	33886	33886					0.02661698169617921
LISEPQIPKS	10	Unmodified	_LISEPQIPKS_					0	0	0		nc|nan|Q8IXR9-2|C12orf56;ENSG00000185306|ENST00000543942|C12orf56;XPOT-C12orf56|1|fusion;XPOT-C12orf56|2|fusion	nc|nan|Q8IXR9-2|C12orf56	nc|nan|Q8IXR9-2|C12orf56	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.30712890625	2	556.321514	1110.62847	2.0561	0.0011438	3.7622	0.002093	5.8183	0.0032368	556.323282763344	133.6	0.65552	133.6	133.35	134.01	0					25	13	3	0	0	0	0.026782	1	15525	15525		30.318	0	1	122180			30633	8246	25173	25199	33887	33887					0.07758567820269491
LISGGEALAR	10	Unmodified	_LISGGEALAR_					0	0	0			REV__ENSG00000172037|ENST00000305544|LAMB2	REV__ENSG00000172037|ENST00000305544|LAMB2	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.29974365234375	2	493.785099	985.555644	1.2464	0.00061547	-0.48083	-0.00023742	0.76561	0.00037805	493.7844824478978	91.752	1.4693	90.516	90.219	91.689	-1.2355					56	27	3	0	0	0	0.026681	1	8112	8112		44.377	24.38	1	254470	+		30634	21668	25174	25200	33888	33888					0.062288588175078985
LISGSLEALM	10	Unmodified	_LISGSLEALM_					0	0	0		ENSG00000198915|ENST00000395810|RASGEF1A;nc|ENSG00000198915|Q8N9B8-2|RASGEF1A	ENSG00000198915|ENST00000395810|RASGEF1A	ENSG00000198915|ENST00000395810|RASGEF1A	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.2825927734375	2	517.283543	1032.55253	1.0061	0.00052044	-4.1686	-0.0021564	-3.1625	-0.0016359	517.2812284083195	139.48	1.0755	137.98	137.73	138.81	-1.4952					50	20	4	0	0	0	0.66721	1	13610	13610		34.173	0.65696	1	103460			30635	8907	25175	25201	33889	33889					0.03755847648494637
LISHAKRKSQ	10	Unmodified	_LISHAKRKSQ_					0	0	0			REV__tr|A0A553SR55|A0A553SR55_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_00470PE=4SV=1	REV__tr|A0A553SR55|A0A553SR55_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_00470PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.3306274414062	2	584.351471	1166.68839	1.8681	0.0010916	-1.1656	-0.00068113	0.70252	0.00041052	584.3527482390942	95.337	0.70769	95.337	95.119	95.826	0					25	16	3	0	0	0	0.026694	1	10408	10408		31.634	1.3165	1	775600	+		30636	30692	25176	25202	33890	33890					0.1117130327418181
LISIGISFW	9	Unmodified	_LISIGISFW_					0	0	0			REV__nc|ENSG00000134317|Q9NZI5-2|GRHL1	REV__nc|ENSG00000134317|Q9NZI5-2|GRHL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.762451171875	2	518.29731	1034.58007	0.25676	0.00013308	1.015	0.00052609	1.2718	0.00065917	518.2978242004278	101.86	1.1065	101.86	101.32	102.42	0					28	25	2	0	0	0	0.027462	1	11299	11299		18.324	0	1	930570	+		30637	28863	25177	25203	33891	33891					0.06416118971037577
LISIGISFW	9	Unmodified	_LISIGISFW_					0	0	0			REV__nc|ENSG00000134317|Q9NZI5-2|GRHL1	REV__nc|ENSG00000134317|Q9NZI5-2|GRHL1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	518.29731	1034.58007	0.47696	0.00024721	-4.3161	-0.002237	-3.8392	-0.0019898	518.2946727522846	103.36	0.946	101.92	101.66	102.6	-1.4347	0.045233	-0.0020983	NaN	18.324	21	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11514	+		30638	28863	25177	25203							0.06416118971037577
LISIHDNEF	9	Unmodified	_LISIHDNEF_					0	0	0		ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C	ENSG00000009335|ENST00000348165|UBE3C	ENSG00000009335|ENST00000348165|UBE3C	MULTI-SECPEP	OvCa9_classI_Rep2	2	543.8178100585938	2	544.274564	1086.53457	-1.42	-0.00077287	1.2717	0.00069214	-0.14832	-8.0727E-05	544.2750270019243	102.08	1.1874	101.32	101.01	102.2	-0.764					36	23	4	0	0	0	0.027426	1	9411	9411		53.351	0	1	78541			30639	928	25178	25204	33892	33892					-0.005231512820046191
LISKCVGAVA	10	Unmodified	_LISKCVGAVA_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	OvCa9_classI_Rep2	2	480.78204345703125	2	480.78097	959.547388	-1.0055	-0.00048344	4.3477	0.0020903	3.3422	0.0016068	480.7829878496556	48.434	1.9358	45.674	45.23	47.166	-2.7603					133	38	6	0	0	0	0.6104	1	2988	2988		40.778	3.6191	1	1103900	+		30640	17152	25179	25205	33893	33893					0.06599588576534643
LISKGANVNR	10	Unmodified	_LISKGANVNR_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;nc|ENSG00000132466|O75179-5|ANKRD17;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17;nc|ENSG00000132466|O75179-3|ANKRD17;nc|ENSG00000132466|O75179-4|ANKRD17	ENSG00000131503|ENST00000360839|ANKHD1;ENST00000514252.1_1_4:73978989-74017230:-|nuORF	ENST00000514252.1_1_4:73978989-74017230:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.7051391601562	2	536.317097	1070.61964	0.082371	4.4177E-05	-0.53913	-0.00028914	-0.45676	-0.00024497	536.3167283010398	32.08	0.74461	32.08	31.906	32.651	0					25	14	2	0	0	0	0.026606	1	1426	1426		52.937	1.744	1	726330			30641	4072;4139	25180	25206	33894	33894					0.08715638974467765
LISLWSHVY	9	Unmodified	_LISLWSHVY_					0	0	0			REV__ENSG00000176798|ENST00000641819|OR51L1	REV__ENSG00000176798|ENST00000641819|OR51L1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	558.8255004882812	2	559.305667	1116.59678	0.66954	0.00037448	1.7848	0.00099825	2.4543	0.0013727	559.3066761772359	117.02	0.63054	115.65	115.25	115.88	-1.3645					15	11	2	0	0	0	0.027456	1	10914	10914		47.916	1.9636	1	16346	+		30642	21970	25181	25207	33895	33895					0.04314619856995705
LISLYIIIT	9	Unmodified	_LISLYIIIT_					0	0	0			REV__nc|ENSG00000175348|Q9NQ34-2|TMEM9B	REV__nc|ENSG00000175348|Q9NQ34-2|TMEM9B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.7984008789062	2	524.836268	1047.65798	-1.3763	-0.00072233	2.261	0.0011866	0.88466	0.0004643	524.837303894282	40.873	0.2599	37.919	37.789	38.049	-2.9541					6	4	2	0	0	0	0.027462	1	1802	1802		17.365	5.1581	1	10463	+		30643	21893	25182	25208	33896	33896					0.1360613183642272
LISMKWIL	8	Oxidation (M)	_LISM(Oxidation (M))KWIL_		LISM(1)KWIL		LISM(77)KWIL	0	0	1		tr|A0A7D6ZWU7|A0A7D6ZWU7_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20490PE=4SV=1	tr|A0A7D6ZWU7|A0A7D6ZWU7_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20490PE=4SV=1	tr|A0A7D6ZWU7|A0A7D6ZWU7_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20490PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	510.30523681640625	2	510.301539	1018.58852	1.5675	0.00079989	1.8489	0.00094349	3.4164	0.0017434	510.30234265150733	87.807	1.7201	86.376	86.04	87.76	-1.4311					94	34	4	0	0	0	0.50674	1	7667	7667		76.847	10.417	1	558390			30644	35856	25183	25209	33897	33897		777			0.07997349616027805
LISMKWIL	8	Oxidation (M)	_LISM(Oxidation (M))KWIL_					0	0	1		tr|A0A7D6ZWU7|A0A7D6ZWU7_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20490PE=4SV=1	tr|A0A7D6ZWU7|A0A7D6ZWU7_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20490PE=4SV=1	tr|A0A7D6ZWU7|A0A7D6ZWU7_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20490PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	510.301539	1018.58852	2.3907	0.00122	-3.2825	-0.001675	-0.89178	-0.00045508	510.2976704716368	86.119	0.51926	86.119	85.87	86.389	0	-0.12858	-0.0051268	NaN	76.847	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	406310			30645	35856	25183	25209				777			0.07997349616027805
LISNAPRKTL	10	Unmodified	_LISNAPRKTL_					0	0	0			REV__ENST00000360547.9_1_15:81592605-81592662:+|nuORF	REV__ENST00000360547.9_1_15:81592605-81592662:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.2858276367188	2	556.842948	1111.67134	0.47558	0.00026483	-0.071869	-4.002E-05	0.40371	0.00022481	556.8425941120954	73.769	0.4959	73.769	73.56	74.056	0					20	12	3	0	0	0	0.026714	1	7278	7278		35.152	3.6222	1	1156600	+		30646	24831	25184	25210	33898	33898					0.11997382668369028
LISNPKQVF	9	Unmodified	_LISNPKQVF_					0	0	0		tr|A0A553SFY0|A0A553SFY0_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_09735PE=4SV=1	tr|A0A553SFY0|A0A553SFY0_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_09735PE=4SV=1	tr|A0A553SFY0|A0A553SFY0_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_09735PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3033447265625	2	523.305667	1044.59678	-0.69596	-0.0003642	-3.2951	-0.0017244	-3.9911	-0.0020886	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.62352	1	13881	13881		29.15	3.6994	1	130240			30647	33090	25185	25211	33899	33899					0.0762661985700106
LISPCTPLLV	10	Unmodified	_LISPCTPLLV_					0	0	0			REV__ENST00000360104.7_1_7:151860583-151860646:-|nuORF	REV__ENST00000360104.7_1_7:151860583-151860646:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.7675170898438	2	528.312103	1054.60965	1.6135	0.00085241	4.3354	0.0022904	5.9488	0.0031428	528.3142614375054	90.651	0.59151	90.651	90.346	90.938	0					22	14	2	0	0	0	0.026752	1	9694	9694		53.351	3.3269	1	1563300	+		30648	24822	25186	25212	33900	33900					0.08453314924872757
LISPCTPLLV	10	Unmodified	_LISPCTPLLV_					0	0	0			REV__ENST00000360104.7_1_7:151860583-151860646:-|nuORF	REV__ENST00000360104.7_1_7:151860583-151860646:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	528.312103	1054.60965	0.44846	0.00023693	3.3891	0.0017905	3.8376	0.0020274	528.3136307800089	91.688	1.3693	90.452	90.061	91.43	-1.2355	-0.0069262	-0.0007732	NaN	53.351	68	25	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	447240	+		30649	24822	25186	25212							0.08453314924872757
LISPIPAIK	9	Unmodified	_LISPIPAIK_					0	0	0			REV__ENST00000491383.5_1_2:86716620-86718467:+|nuORF	REV__ENST00000491383.5_1_2:86716620-86718467:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	476.32000732421875	2	476.315503	950.616454	2.7907	0.0013293	-0.88067	-0.00041947	1.9101	0.00090979	476.31488525721954	107.92	0.37968	107.92	107.65	108.03	0					27	8	4	0	0	0	0.19758	1	12203	12203		76.774	14.667	1	4194000	+		30650	26674	25187	25213	33901	33901					0.13916995867748483
LISPLCVAKR	10	Unmodified	_LISPLCVAKR_					0	0	0			REV__ENSG00000100697|ENST00000343455|DICER1	REV__ENSG00000100697|ENST00000343455|DICER1	MULTI-MSMS	OvCa99_classI_Rep5	1	550.838134765625	2	550.336444	1098.65834	1.5539	0.00085517	-2.139	-0.0011772	-0.58513	-0.00032202	550.3352630562464	134.87	0.94147	134.87	134.61	135.55	0					30	20	2	0	0	0	0.41408	1	15711	15711		66.429	7.6473	1	151240	+		30651	17445	25188	25214	33902	33902					0.11295228284620862
LISPLCVAKR	10	Unmodified	_LISPLCVAKR_					0	0	0			REV__ENSG00000100697|ENST00000343455|DICER1	REV__ENSG00000100697|ENST00000343455|DICER1	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.838134765625	2	550.336444	1098.65834	1.5539	0.00085517	-2.139	-0.0011772	-0.58513	-0.00032202	550.3352630562464	134.87	0.94147	134.87	134.61	135.55	0					30	20	2	0	0	0	0.026635	1	15711	15711		66.429	15.094	1	151240	+		30652	17445	25188	25214	33903	33903					0.11295228284620862
LISQLEAQL	9	Unmodified	_LISQLEAQL_					0	0	0		ENSG00000054690|ENST00000329153|PLEKHH1	ENSG00000054690|ENST00000329153|PLEKHH1	ENSG00000054690|ENST00000329153|PLEKHH1	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.79388427734375	2	507.795132	1013.57571	0.21115	0.00010722	-0.66397	-0.00033716	-0.45283	-0.00022994	507.7947280281232	128.58	1.4414	127.13	126.85	128.29	-1.4565					78	28	4	0	0	0	0.084918	1	12283	12283		101.25	2.6232	1	608480			30653	1213	25189	25215	33904	33904					0.06946609757483202
LISSPRPL	8	Unmodified	_LISSPRPL_					0	0	0			REV__nc|ENSG00000078018|P11137-2|MAP2	REV__nc|ENSG00000078018|P11137-2|MAP2	MULTI-MSMS	OvCa99_classI_Rep5	1	441.775634765625	2	441.774003	881.533452	2.8937	0.0012784	-0.49339	-0.00021796	2.4003	0.0010604	441.7736262473108	125.86	0.74959	125.86	125.67	126.42	0					32	15	3	0	0	0	0.57734	2	14565	14542;14565		68.787	3.2778	1	370090	+		30654	17018	25190	25216	33905;33906	33906					0.08794679139748496
LISSSLIIEL	10	Unmodified	_LISSSLIIEL_					0	0	0			REV__ENST00000503808.5_1_4:57204874-57250274:-|nuORF	REV__ENST00000503808.5_1_4:57204874-57250274:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7941284179688	2	544.33409	1086.65363	-0.74879	-0.00040759	1.7661	0.00096136	1.0173	0.00055377	544.3348396275338	64.349	0.78266	64.349	64.011	64.793	0					45	18	4	0	0	0	0.026639	1	5803	5803		44.117	0	1	2860400	+		30655	26850	25191	25217	33907	33907					0.11376622622856303
LISTKSSVI	9	Unmodified	_LISTKSSVI_					0	0	0		tr|A0A553SLK4|A0A553SLK4_NIACIGlyceroluptakeoperonantiterminatorregulatoryproteinOS=NialliacirculansOX=1397GN=CEQ21_20825PE=4SV=1	tr|A0A553SLK4|A0A553SLK4_NIACIGlyceroluptakeoperonantiterminatorregulatoryproteinOS=NialliacirculansOX=1397GN=CEQ21_20825PE=4SV=1	tr|A0A553SLK4|A0A553SLK4_NIACIGlyceroluptakeoperonantiterminatorregulatoryproteinOS=NialliacirculansOX=1397GN=CEQ21_20825PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	474.2911682128906	2	474.292225	946.569897	0.66896	0.00031728	-3.6351	-0.0017241	-2.9661	-0.0014068	474.2903983713437	130.57	1.7358	130.34	129.71	131.45	-0.22697					61	34	2	0	0	0	0.7044	1	12847	12847		16.473	2.6978	1	39802			30656	33733	25192	25218	33908	33908					0.09447511245809892
LISTRCLF	8	Carbamidomethyl (C)	_LISTRC(Carbamidomethyl (C))LF_	LISTRC(1)LF		LISTRC(77)LF		0	1	0		ENST00000447070.1_1_2:27581093-27581231:+|nuORF	ENST00000447070.1_1_2:27581093-27581231:+|nuORF	ENST00000447070.1_1_2:27581093-27581231:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	505.2777404785156	2	505.278595	1008.54264	2.235	0.0011293	-4.2234	-0.002134	-1.9884	-0.0010047	505.27656906561225	86.868	3.3317	86.868	86.431	89.763	0					250	80	6	0	0	0	0.50674	1	9307	9307		76.847	12.639	1	155250000			30657	12003	25193	25219	33909	33909	135				0.038707044337797925
LISTRPYLI	9	Unmodified	_LISTRPYLI_					0	0	0		HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|8|1|sense	HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|8|1|sense	HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|8|1|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	538.3265991210938	2	538.329142	1074.64373	-5.5921	-0.0030104	1.7538	0.0009441	-3.8384	-0.0020663	538.3299819955096	158.56	1.0599	158.33	158.09	159.15	-0.22697					66	21	5	0	0	0	0.6653	1	16114	16114		24.203	1.1603	1	327100			30658	14457	25194	25220	33910	33910					0.10939479408125408
LISVIIFISP	10	Unmodified	_LISVIIFISP_					0	0	0		nc|ENSG00000260811|A6NMZ5|OR4C45	nc|ENSG00000260811|A6NMZ5|OR4C45	nc|ENSG00000260811|A6NMZ5|OR4C45	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.2709350585938	2	551.349543	1100.68453	-0.33029	-0.0001821	-2.2242	-0.0012263	-2.5545	-0.0014084	551.3481717781564	56.51	0.69793	56.51	56.135	56.833	0					37	16	3	0	0	0	0.027147	1	4657	4657		15.642	3.435	1	936550			30659	15363	25195	25221	33911	33911					0.1382182072775322
LISVNGIFVI	10	Unmodified	_LISVNGIFVI_					0	0	0		ENSG00000121594|ENST00000264246|CD80	ENSG00000121594|ENST00000264246|CD80	ENSG00000121594|ENST00000264246|CD80	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.2950439453125	2	537.831517	1073.64848	1.1011	0.00059221	0.78366	0.00042148	1.8848	0.0010137	537.8318203089149	131.46	0.33015	131.46	131.29	131.62	0					10	6	2	0	0	0	0.027021	1	15270	15270		29.15	8.2026	1	44311			30660	3490	25196	25222	33912	33912					0.11460363550895636
LISYKVKESL	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LISYKVKESL_					1	0	0			REV__ENST00000477986.2_1_14:74512798-74514942:+|nuORF	REV__ENST00000477986.2_1_14:74512798-74514942:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3551635742188	2	611.358096	1220.70164	-3.1571	-0.0019301	-0.12375	-7.5658E-05	-3.2809	-0.0020058	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.59703	1	12828	12828		42.396	12.078	1	666990	+		30661	26399	25197	25223	33913	33913					0.1001169654291516
LITCSAAAIF	10	Unmodified	_LITCSAAAIF_					0	0	0			REV__nc|ENSG00000112337|O00624-2|SLC17A2	REV__nc|ENSG00000112337|O00624-2|SLC17A2	MULTI-MSMS	OvCa99_classI_Rep5	1	505.2743835449219	2	505.272978	1008.5314	1.1188	0.00056531	-2.3026	-0.0011635	-1.1838	-0.00059815	505.2716726541482	143.09	1.1757	143.09	142.69	143.86	0					58	23	5	0	0	0	0.59703	1	16702	16702		42.396	0	1	640620	+		30662	18096	25198	25224	33914	33914					0.02747882339622265
LITDLAELL	9	Unmodified	_LITDLAELL_					0	0	0			REV__ENSG00000101210|ENST00000217182|EEF1A2	REV__ENSG00000101210|ENST00000217182|EEF1A2	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.778564453125	2	500.799883	999.585213	-1.0606	-0.00053115	-2.9633	-0.001484	-4.0239	-0.0020152	500.79833255171013	36.64	1.0426	36.64	36.442	37.485	0					40	22	3	0	0	0	0.027462	1	1954	1954		30.504	0	1	1200600	+		30663	17482	25199	25225	33915	33915					0.08540378042994234
LITEVRRR	8	Unmodified	_LITEVRRR_					0	0	0			REV__ENSG00000171695|ENST00000302096|LKAAEAR1	REV__ENSG00000171695|ENST00000302096|LKAAEAR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.3016967773438	2	521.827632	1041.64071	-0.80567	-0.00042042	1.4582	0.00076091	0.65249	0.00034049	521.8280096703788	101.69	0.5004	99.419	99.16	99.66	-2.2665					13	9	2	0	0	0	0.028476	1	9150	9150		30.504	5.9844	1	15350	+		30664	21638	25200	25226	33916	33916					0.12155649073997665
LITFTKIML	9	Unmodified	_LITFTKIML_					0	0	0		tr|A0A553SQX3|A0A553SQX3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07385PE=4SV=1	tr|A0A553SQX3|A0A553SQX3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07385PE=4SV=1	tr|A0A553SQX3|A0A553SQX3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07385PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3306884765625	2	540.330296	1078.64604	0.34656	0.00018726	-0.55993	-0.00030255	-0.21337	-0.00011529	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.65476	1	13722	13722		25.45	1.2474	1	342200			30665	34208	25201	25227	33917	33917					0.1098619182157563
LITGAIYYI	9	Unmodified	_LITGAIYYI_					0	0	0			REV__tr|A0A7D6VUI9|A0A7D6VUI9_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_20720PE=3SV=1	REV__tr|A0A7D6VUI9|A0A7D6VUI9_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_20720PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	512.8363647460938	2	513.797143	1025.57973	-0.22721	-0.00011674	-4.1143	-0.0021139	-4.3415	-0.0022307	513.7948909406558	89.853	0.51494	87.772	87.541	88.056	-2.0805					15	9	2	0	0	0	0.027462	1	5534	5534		33.516	8.0654	1	34607	+		30666	31681	25202	25228	33918	33918					0.067966992511856
LITGGQGHIV	10	Unmodified	_LITGGQGHIV_					0	0	0		ENST00000540163.5_1_11:114270984-114271173:+|nuORF	ENST00000540163.5_1_11:114270984-114271173:+|nuORF	ENST00000540163.5_1_11:114270984-114271173:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	497.7872009277344	2	497.787641	993.56073	-1.6587	-0.00082566	1.4226	0.00070815	-0.23606	-0.00011751	497.78818191941025	38.201	0.9397	35.491	35.271	36.211	-2.7097					48	18	4	0	0	0	0.50656	1	1788	1788		53.351	0.41475	1	265770			30667	13446	25203	25229	33919	33919					0.06369162680141471
LITGSWTYVTN	11	Unmodified	_LITGSWTYVTN_					0	0	0		ENST00000317907.8_1_2:33012094-33036106:+|nuORF	ENST00000317907.8_1_2:33012094-33036106:+|nuORF	ENST00000317907.8_1_2:33012094-33036106:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	627.82470703125	2	627.821878	1253.6292	-0.34985	-0.00021964	2.4616	0.0015454	2.1118	0.0013258	627.8233525090543	55.038	1.1711	55.038	54.761	55.932	0					78	27	4	0	0	0	0.24568	1	4488	4488		56.434	11.412	1	4836300			30668	10358	25204	25230	33920	33920					0.012533624693332968
LITIFSKI	8	Unmodified	_LITIFSKI_					0	0	0			REV__Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|76|2|sense	REV__Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|76|2|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	467.7904968261719	2	467.802229	933.589904	-0.86045	-0.00040252	-0.12837	-6.0053E-05	-0.98882	-0.00046257	467.8022608649941	44.813	0.25388	41.774	41.613	41.867	-3.0385					8	4	2	0	0	0	0.028476	1	2235	2235		33.516	3.674	1	14823	+		30669	28179	25205	25231	33921	33921					0.12045306976426673
LITIQDPVKF	10	Unmodified	_LITIQDPVKF_					0	0	0			REV__tr|A0A553SQM3|A0A553SQM3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07950PE=4SV=1	REV__tr|A0A553SQM3|A0A553SQM3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07950PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	588.2986450195312	2	587.347532	1172.68051	-0.44275	-0.00026005	-2.4161	-0.0014191	-2.8589	-0.0016792	587.3461647758048	86.367	0.73723	84.876	84.642	85.379	-1.4906					22	13	2	0	0	0	0.026891	1	7548	7548		39.253	16.21	1	33697	+		30670	30644	25206	25232	33922	33922					0.10107731234029416
LITKKENQ	8	Unmodified	_LITKKENQ_					0	0	0			REV__nc|ENSG00000164649|Q96GN5-5|CDCA7L	REV__nc|ENSG00000164649|Q96GN5-5|CDCA7L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.7674255371094	2	487.287474	972.560395	0.72014	0.00035092	-1.5049	-0.00073333	-0.78478	-0.00038241	487.2866016273654	89.639	0.74603	87.064	86.704	87.45	-2.575					30	14	3	0	0	0	0.028476	1	7726	7726		29.15	4.6304	1	21276	+		30671	21007	25207	25233	33923	33923					0.07301742960282809
LITKKENQ	8	Unmodified	_LITKKENQ_					0	0	0			REV__nc|ENSG00000164649|Q96GN5-5|CDCA7L	REV__nc|ENSG00000164649|Q96GN5-5|CDCA7L	MULTI-MATCH	OvCa9_classI_Rep3	3		2	487.287474	972.560395	-0.89447	-0.00043587	-0.11324	-5.5181E-05	-1.0077	-0.00049105	487.2874501100267	89.149	0.63854	87.018	86.75	87.388	-2.1309	-0.022859	0.00061679	NaN	37.159	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32118	+		30672	21007	25207	25233							0.07301742960282809
LITKNVEN	8	Unmodified	_LITKNVEN_					0	0	0			REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10	REV__nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-MSMS	OvCa99_classI_Rep5	1	465.7679443359375	2	465.766374	929.518196	-0.34743	-0.00016182	0.36574	0.00017035	0.018305	8.5261E-06	465.7664090700968	49.183	1.0927	49.183	48.895	49.988	0					52	24	4	0	0	0	0.27528	1	3644	3644		111.65	1.5284	1	2814600	+		30673	20373	25208	25234	33924	33924					0.05061767551910634
LITLWRRFGRP	11	Unmodified	_LITLWRRFGRP_					0	0	0		ENSG00000136114|ENST00000258613|THSD1;nc|ENSG00000136114|Q9NS62-2|THSD1	ENSG00000136114|ENST00000258613|THSD1	ENSG00000136114|ENST00000258613|THSD1	MULTI-MSMS	OvCa9_classI_Rep3	3	472.2822265625	3	472.285851	1413.83572	-6.0448	-0.0028549	1.6169	0.00076362	-4.4279	-0.0020912	472.28675973301637	159.08	3.3809	157.81	156.71	160.09	-1.267					177	72	4	0	0	0	0.72516	1	13792	13792		13.508	1.0751	1	110830			30674	4459	25209	25235	33925	33925					0.14535819878938128
LITMCLLVSW	10	Unmodified	_LITMCLLVSW_					0	0	0		tr|A0A553SFY2|A0A553SFY2_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09700PE=4SV=1	tr|A0A553SFY2|A0A553SFY2_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09700PE=4SV=1	tr|A0A553SFY2|A0A553SFY2_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09700PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	590.3220825195312	2	589.819238	1177.62392	1.8281	0.0010783	-3.0096	-0.0017751	-1.1815	-0.00069687	590.3182566202097	128.17	0.8392	128.17	127.67	128.51	0					22	17	2	0	0	0	0.64063	1	14869	14869		37.159	1.5408	1	305590			30675	33092	25210	25236	33926	33926					0.0422164408153094
LITPFFNI	8	Unmodified	_LITPFFNI_					0	0	0		ENST00000397070.6_1_8:38853282-38853970:-|nuORF	ENST00000397070.6_1_8:38853282-38853970:-|nuORF	ENST00000397070.6_1_8:38853282-38853970:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.8137512207031	2	482.778754	963.542954	0.51174	0.00024706	-4.4734	-0.0021597	-3.9617	-0.0019126	482.7765010159768	161.5	0.4554	161.5	161.26	161.72	0					15	8	2	0	0	0	0.028476	1	18949	18949		19.36	1.0356	1	41855			30676	11338	25211	25237	33927	33927					0.05972447425290284
LITPPPLRV	9	Unmodified	_LITPPPLRV_					0	0	0			REV__ENSG00000148606|ENST00000372371|POLR3A	REV__ENSG00000148606|ENST00000372371|POLR3A	MULTI-MSMS	OvCa9_classI_Rep2	2	503.3253173828125	2	503.326402	1004.63825	0.14036	7.0648E-05	-0.73987	-0.0003724	-0.59951	-0.00030175	503.32594865659956	112.82	1.9244	112.7	112.28	114.2	-0.12174					111	38	5	0	0	0	0.22961	1	10683	10683		71.296	0	1	946430	+		30677	20118	25212	25238	33928	33928					0.13611800616320124
LITPPPLRV	9	Unmodified	_LITPPPLRV_					0	0	0			REV__ENSG00000148606|ENST00000372371|POLR3A	REV__ENSG00000148606|ENST00000372371|POLR3A	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.3255615234375	2	503.326402	1004.63825	0.16092	8.0995E-05	-0.74874	-0.00037686	-0.58781	-0.00029586	503.3259504864153	114.09	2.4187	112.65	112.2	114.61	-1.4461					133	47	5	0	0	0	0.56889	1	10654	10654		35.618	0	1	1182900	+		30678	20118	25212	25238	33929	33929					0.13611800616320124
LITRKSMVW	9	Unmodified	_LITRKSMVW_					0	0	0			REV__ENSG00000198015|ENST00000549982|MRPL42	REV__ENSG00000198015|ENST00000549982|MRPL42	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3301391601562	2	567.328619	1132.64269	-0.48412	-0.00027465	2.6482	0.0015024	2.1641	0.0012278	567.3299446868054	145.54	4.8872	144.11	142.68	147.57	-1.4357					247	95	4	0	0	0	0.68424	1	14578	14578		21.96	1.013	1	208760	+		30679	22979	25213	25239	33930	33930					0.08166941767581193
LITSLKPW	8	Unmodified	_LITSLKPW_					0	0	0			REV__tr|A0A7D6VMT7|A0A7D6VMT7_9CLOTCarbohydratebindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13070PE=4SV=1	REV__tr|A0A7D6VMT7|A0A7D6VMT7_9CLOTCarbohydratebindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13070PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.7822265625	2	479.292028	956.569503	-1.6523	-0.00079193	-2.3327	-0.0011181	-3.985	-0.00191	479.29074105793177	84.721	1.2936	83.174	82.797	84.091	-1.5462					58	25	3	0	0	0	0.028476	1	7279	7279		68.485	20.569	1	220530	+		30680	31147	25214	25240	33931	33931					0.08948136316610089
LITSLKPW	8	Unmodified	_LITSLKPW_					0	0	0			REV__tr|A0A7D6VMT7|A0A7D6VMT7_9CLOTCarbohydratebindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13070PE=4SV=1	REV__tr|A0A7D6VMT7|A0A7D6VMT7_9CLOTCarbohydratebindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13070PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	479.292028	956.569503	-0.68656	-0.00032906	-3.3579	-0.0016094	-4.0444	-0.0019385	479.29016188860317	85.448	1.8037	83.228	82.937	84.74	-2.2204	0.026558	0.00023919	NaN	68.485	78	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	461080	+		30681	31147	25214	25240							0.08948136316610089
LITSVEKKVF	10	Unmodified	_LITSVEKKVF_					0	0	0		nc|ENSG00000164342|O15455-2|TLR3;TLR3|p.S776Lfs*19|1|0.24|ENSG00000164342|chr4:186084011-186084012|-/C|frameshift_variant;ENSG00000164342|ENST00000296795|TLR3	nc|ENSG00000164342|O15455-2|TLR3	nc|ENSG00000164342|O15455-2|TLR3	MULTI-MSMS	OvCa99_classI_Rep5	1	582.8649291992188	2	582.355357	1162.69616	0.028574	1.664E-05	3.5488	0.0020667	3.5774	0.0020833	582.3572078090978	164.27	1.1813	164.27	163.8	164.98	0					70	44	2	0	0	0	0.76627	1	19163	19163		23.042	7.4007	1	30700			30682	6450	25215	25241	33932	33932					0.12132017751082458
LITSWCHDP	9	Unmodified	_LITSWCHDP_					0	0	0		ENST00000456826.2_1_1:149262279-149263299:+|nuORF	ENST00000456826.2_1_1:149262279-149263299:+|nuORF	ENST00000456826.2_1_1:149262279-149263299:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	536.2498779296875	2	536.250034	1070.48552	-2.2469	-0.0012049	3.0602	0.001641	0.81324	0.0004361	536.2515578393518	119.86	1.4307	119.69	119.25	120.68	-0.17137					74	28	4	0	0	0	0.21395	2	11538	11538;11557		73.975	8.5094	1	163230			30683	12115	25216	25242	33933;33934	33933					-0.04690762842596996
LITSWCHDP	9	Unmodified	_LITSWCHDP_					0	0	0		ENST00000456826.2_1_1:149262279-149263299:+|nuORF	ENST00000456826.2_1_1:149262279-149263299:+|nuORF	ENST00000456826.2_1_1:149262279-149263299:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.25	2	536.250034	1070.48552	-1.5791	-0.00084681	2.3068	0.001237	0.72768	0.00039022	536.2511641448887	120.77	1.4863	119.43	119.13	120.62	-1.3479					72	28	3	0	0	0	0.36502	1	11398	11398		55.504	2.1528	1	361250			30684	12115	25216	25242	33935	33935					-0.04690762842596996
LITVVKIR	8	Unmodified	_LITVVKIR_					0	0	0			REV__tr|A0A7D6ZHF7|A0A7D6ZHF7_9CLOTOFAfamilyMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_22950PE=4SV=1	REV__tr|A0A7D6ZHF7|A0A7D6ZHF7_9CLOTOFAfamilyMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_22950PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	471.3105163574219	2	471.328945	940.643337	-1.2843	-0.00060534	0.25599	0.00012066	-1.0283	-0.00048469	471.32904700004343	33.854	0.44313	31.144	30.922	31.365	-2.7097					10	8	2	0	0	0	0.028476	1	1239	1239		33.516	8.0654	1	12142	+		30685	32024	25217	25243	33936	33936					0.17064104478947684
LITYKLHNK	9	Unmodified	_LITYKLHNK_					0	0	0		tr|A0A7D7A1H9|A0A7D7A1H9_9CLOTAnkyrinrepeatdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15355PE=4SV=1	tr|A0A7D7A1H9|A0A7D7A1H9_9CLOTAnkyrinrepeatdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15355PE=4SV=1	tr|A0A7D7A1H9|A0A7D7A1H9_9CLOTAnkyrinrepeatdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15355PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.3251953125	2	565.340041	1128.66553	0.38773	0.0002192	3.2485	0.0018365	3.6362	0.0020557	565.3418687597103	32.724	0.24364	32.724	32.553	32.796	0					5	4	2	0	0	0	0.027462	1	1438	1438		26.693	0	1	19843			30686	36037	25218	25244	33937	33937					0.1063428415668568
LIVADYGQPN	10	Unmodified	_LIVADYGQPN_					0	0	0			REV__tr|A0A7D6VPW1|A0A7D6VPW1_9CLOTLCPfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18365PE=3SV=1	REV__tr|A0A7D6VPW1|A0A7D6VPW1_9CLOTLCPfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18365PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.2958374023438	2	545.282389	1088.55022	-0.39565	-0.00021574	0.1836	0.00010011	-0.21205	-0.00011563	545.2823494865887	48.963	0.26773	48.963	48.718	48.986	0					9	5	2	0	0	0	0.026688	1	3620	3620		19.104	0	1	319860	+		30687	31283	25219	25245	33938	33938					0.009491352350551097
LIVAELEL	8	Unmodified	_LIVAELEL_					0	0	0			REV__ENST00000452532.1_1_X:55935193-56041369:+|nuORF	REV__ENST00000452532.1_1_X:55935193-56041369:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.2741394042969	2	450.276044	898.537535	-1.3925	-0.00062703	-1.6106	-0.00072523	-3.0032	-0.0013523	450.2752805302911	148.27	1.3965	146.84	146.48	147.87	-1.435					87	28	5	0	0	0	0.72922	1	14601	14601		37.028	0	1	541000	+		30688	25985	25220	25246	33939	33939					0.08420723842789357
LIVAGKYSK	9	Unmodified	_LIVAGKYSK_					0	0	0		nc|ENSG00000096063|Q96SB4-4|SRPK1;ENSG00000096063|ENST00000373825|SRPK1;nc|ENSG00000096063|Q96SB4-3|SRPK1	nc|ENSG00000096063|Q96SB4-4|SRPK1	nc|ENSG00000096063|Q96SB4-4|SRPK1	MULTI-SECPEP	OvCa9_classI_Rep3	3	489.23089599609375	2	489.80276	977.590967	0.032707	1.602E-05	0.049982	2.4481E-05	0.082689	4.0501E-05	489.8024610538916	105.34	0.46851	103.99	103.78	104.25	-1.3482					19	8	3	0	0	0	0.027462	1	7406	7406		6.7355	0	1	30911			30689	1943	25221	25247	33940	33940					0.10127521345316381
LIVAKYFSLP	10	Unmodified	_LIVAKYFSLP_					0	0	0		nc|ENSG00000241119|O60656-2|UGT1A9;ENSG00000241119|ENST00000354728|UGT1A9;nc|ENSG00000242515|Q9HAW8-2|UGT1A10;ENSG00000242515|ENST00000344644|UGT1A10;UGT1A8|p.V258Cfs*31|1|0.22|ENSG00000242366|chr2:233618475-233618476|-/T|frameshift_variant;nc|ENSG00000244122|Q9HAW7-2|UGT1A7;nc|ENSG00000242366|Q9HAW9-2|UGT1A8;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242366|ENST00000373450|UGT1A8	nc|ENSG00000241119|O60656-2|UGT1A9;UGT1A8|p.V258Cfs*31|1|0.22|ENSG00000242366|chr2:233618475-233618476|-/T|frameshift_variant	UGT1A8|p.V258Cfs*31|1|0.22|ENSG00000242366|chr2:233618475-233618476|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8421020507812	2	575.847167	1149.67978	-2.8608	-0.0016474	-4.0802	-0.0023496	-6.941	-0.0039969	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.72319	1	14458	14458		27.882	5.9224	1	356230			30690	9349;9364	25222	25248	33941	33941					0.11092936584987001
LIVALKDN	8	Unmodified	_LIVALKDN_					0	0	0		tr|A0A7D6ZXZ0|A0A7D6ZXZ0_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00095PE=4SV=1	tr|A0A7D6ZXZ0|A0A7D6ZXZ0_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00095PE=4SV=1	tr|A0A7D6ZXZ0|A0A7D6ZXZ0_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00095PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	443.27239990234375	2	443.273835	884.533118	-1.4905	-0.00066069	-1.4677	-0.00065059	-2.9582	-0.0013113	443.2730906196648	139.11	1.2789	138.05	137.68	138.96	-1.0595					59	25	3	0	0	0	0.74229	2	11397	11397;11439		30.504	6.3009	1	174030			30691	35900	25223	25249	33942;33943	33942					0.08623259419891838
LIVATPRII	9	Unmodified	_LIVATPRII_					0	0	0			REV__ENSG00000069943|ENST00000164305|PIGB	REV__ENSG00000069943|ENST00000164305|PIGB	MULTI-MSMS	OvCa9_classI_Rep2	2	498.33380126953125	2	498.334227	994.653902	0.034655	1.727E-05	-0.51496	-0.00025662	-0.48031	-0.00023935	498.3339335091273	123.54	3.2541	123.31	122.99	126.25	-0.23193					175	65	5	0	0	0	0.46377	1	12058	12058		45.952	3.4775	1	3004600	+		30692	16870	25224	25250	33944	33944					0.15636087133361798
LIVATPRII	9	Unmodified	_LIVATPRII_					0	0	0			REV__ENSG00000069943|ENST00000164305|PIGB	REV__ENSG00000069943|ENST00000164305|PIGB	MULTI-MSMS	OvCa9_classI_Rep2	2	498.33306884765625	2	498.334227	994.653902	0.2425	0.00012085	-0.5271	-0.00026267	-0.2846	-0.00014182	498.33387359588454	132.52	1.8753	132.29	131.93	133.81	-0.22696					110	37	5	0	0	0	0.36502	1	13116	13116		55.504	5.4797	1	948910	+		30693	16870	25224	25250	33945	33945					0.15636087133361798
LIVDAIPA	8	Unmodified	_LIVDAIPA_					0	0	0			REV__nc|ENSG00000023228|P28331-5|NDUFS1	REV__nc|ENSG00000023228|P28331-5|NDUFS1	MULTI-MSMS	OvCa9_classI_Rep2	2	406.248046875	2	406.249829	810.485105	0.12737	5.1745E-05	-3.126	-0.00127	-2.9987	-0.0012182	406.2484453732125	140.19	2.0181	139.96	139.4	141.42	-0.22697					109	40	4	0	0	0	0.72134	1	14001	14001		39.021	9.18	1	304300	+		30694	28709	25225	25251	33946	33946					0.07228185499843676
LIVEPSREL	9	Unmodified	_LIVEPSREL_					0	0	0		ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-3|DDX1;nc|ENSG00000079785|Q92499-2|DDX1	ENSG00000079785|ENST00000233084|DDX1	ENSG00000079785|ENST00000233084|DDX1	MULTI-MSMS	OvCa99_classI_Rep5	1	528.30908203125	2	528.308406	1054.60226	2.3316	0.0012318	-0.34254	-0.00018096	1.989	0.0010508	528.3081126459773	84.533	0.78493	84.533	84.261	85.046	0					49	18	4	0	0	0	0.10502	1	8842	8842		95.815	1.8087	1	6921400			30695	1620	25226	25252	33947	33947					0.07714298648807016
LIVEPSREL	9	Unmodified	_LIVEPSREL_					0	0	0		ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-3|DDX1;nc|ENSG00000079785|Q92499-2|DDX1	ENSG00000079785|ENST00000233084|DDX1	ENSG00000079785|ENST00000233084|DDX1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	528.308406	1054.60226	-1.4384	-0.00075992	-6.4436	-0.0034042	-7.882	-0.0041641	528.3043276370312	86.382	0.80489	84.162	83.885	84.69	-2.2204	-0.18564	-0.0062531	NaN	95.815	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49752			30696	1620	25226	25252							0.07714298648807016
LIVESILEL	9	Unmodified	_LIVESILEL_					0	0	0			REV__ENST00000265140.9_1_5:93966411-93966447:+|nuORF	REV__ENST00000265140.9_1_5:93966411-93966447:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.8155517578125	2	514.815533	1027.61651	-0.32798	-0.00016885	1.4918	0.00076803	1.1639	0.00059918	514.8161006739908	128.1	1.7242	126.66	126.04	127.76	-1.4357					85	33	4	0	0	0	0.52083	1	12239	12239		40.573	1.7665	1	358610	+		30697	24028	25227	25253	33948	33948					0.10380951077104328
LIVFVIGGITY	11	Unmodified	_LIVFVIGGITY_					0	0	0		ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	ENSG00000116266|ENST00000370008|STXBP3	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8558959960938	2	597.860275	1193.706	-3.1765	-0.0018991	-3.3266	-0.0019889	-6.5032	-0.003888	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.70865	1	15087	15087		26.693	2.1737	1	436470			30698	3170	25228	25254	33949	33949					0.11689205756488263
LIVGGLTSL	9	Unmodified	_LIVGGLTSL_					0	0	0			REV__CSMD1|p.Y2458Efs*21|1|0.08|ENSG00000183117|chr8:3087202-3087203|-/TGAAAATTTC|frameshift_variant	REV__CSMD1|p.Y2458Efs*21|1|0.08|ENSG00000183117|chr8:3087202-3087203|-/TGAAAATTTC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	436.7748107910156	2	436.776211	871.537869	-1.3218	-0.00057733	-1.7819	-0.0007783	-3.1037	-0.0013556	436.77534043072393	144.04	2.131	143.81	143.2	145.33	-0.22697					119	42	4	0	0	0	0.65476	1	14486	14486		25.45	0	1	537180	+		30699	16243	25229	25255	33950	33950					0.09696143562666748
LIVGLSTVGA	10	Unmodified	_LIVGLSTVGA_					0	0	0		ENSG00000156709|ENST00000287295|AIFM1;nc|ENSG00000156709|O95831-4|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	ENSG00000156709|ENST00000287295|AIFM1	MULTI-SECPEP	OvCa9_classI_Rep2	2	465.2628479003906	2	465.286943	928.559333	-0.27906	-0.00012984	0.34812	0.00016198	0.069062	3.2134E-05	465.2869544753125	93.874	1.1919	92.775	91.973	93.165	-1.0995					51	22	3	0	0	0	0.026768	1	8428	8428		17.365	0	1	101470			30700	5855	25230	25256	33951	33951					0.09219528591381732
LIVIDSEVF	9	Unmodified	_LIVIDSEVF_					0	0	0			REV__tr|A0A7D6ZMP3|A0A7D6ZMP3_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12815PE=3SV=1	REV__tr|A0A7D6ZMP3|A0A7D6ZMP3_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12815PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	517.7928466796875	2	517.792058	1033.56956	0.51176	0.00026499	1.6599	0.00085948	2.1716	0.0011245	517.7928089547349	157.95	1	157.95	157.65	158.65	0					37	20	4	0	0	0	0.57242	1	18530	18530		35.201	1.6851	1	98867	+		30701	32110	25231	25257	33952	33952					0.054120915259545654
LIVILLKDD	9	Unmodified	_LIVILLKDD_					0	0	0			REV__tr|A0A553SMW3|A0A553SMW3_NIACIGlycerol-3-phosphateacyltransferaseOS=NialliacirculansOX=1397GN=plsYPE=3SV=1	REV__tr|A0A553SMW3|A0A553SMW3_NIACIGlycerol-3-phosphateacyltransferaseOS=NialliacirculansOX=1397GN=plsYPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.273193359375	2	521.33135	1040.64815	-0.4174	-0.00021761	-2.762	-0.0014399	-3.1794	-0.0016575	521.3298059167262	64.853	1.0372	64.853	64.588	65.625	0					62	25	4	0	0	0	0.027462	1	5986	5986		23.042	0	1	5830900	+		30702	30374	25232	25258	33953	33953					0.12944943831053024
LIVIQNPTE	9	Unmodified	_LIVIQNPTE_					0	0	0		ITGB3-DYNLRB1|1|fusion;ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ITGB3-DYNLRB1|1|fusion	ITGB3-DYNLRB1|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	513.798583984375	2	513.795132	1025.57571	2.6896	0.0013819	-0.74584	-0.00038321	1.9438	0.0009987	513.7944885072377	100.87	0.83514	100.87	100.65	101.48	0					48	19	4	0	0	0	0.049969	1	11195	11195		118.74	33.828	1	1343800			30703	14509	25233	25259	33954	33954					0.06394609757489889
LIVITLYV	8	Unmodified	_LIVITLYV_					0	0	0		nc|ENSG00000117322|P20023-4|CR2;ENSG00000117322|ENST00000367057|CR2;nc|ENSG00000117322|P20023-2|CR2;nc|ENSG00000117322|P20023|CR2	nc|ENSG00000117322|P20023-4|CR2	nc|ENSG00000117322|P20023-4|CR2	MULTI-MSMS	OvCa9_classI_Rep3	3	467.2991027832031	2	467.304604	932.594655	-3.7913	-0.0017717	-3.6638	-0.0017121	-7.4551	-0.0034838	467.30283207827034	147.81	1.3484	146.86	146.5	147.85	-0.9512					67	26	4	0	0	0	0.75991	1	12465	12465		21.702	6.0661	1	258480			30704	3248	25234	25260	33955	33955					0.12566191119174164
LIVKIHADK	9	Unmodified	_LIVKIHADK_					0	0	0			REV__ENST00000418257.1_1_10:91122507-91122987:+|nuORF	REV__ENST00000418257.1_1_10:91122507-91122987:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.27685546875	2	518.829309	1035.64407	-0.65803	-0.00034141	0.011246	5.8347E-06	-0.64678	-0.00033557	518.8291833150519	117.11	0.88983	115.74	115.46	116.35	-1.3645					26	16	2	0	0	0	0.027462	1	10990	10990		18.324	0	1	77388	+		30705	25569	25235	25261	33956	33956					0.12766899127996112
LIVKIHADK	9	Unmodified	_LIVKIHADK_					0	0	0			REV__ENST00000418257.1_1_10:91122507-91122987:+|nuORF	REV__ENST00000418257.1_1_10:91122507-91122987:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	518.829309	1035.64407	-0.38581	-0.00020017	-0.89683	-0.0004653	-1.2826	-0.00066547	518.8290914002145	115.61	0.74176	115.49	115.24	115.98	-0.11777	-0.17552	-0.00075248	NaN	16.473	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41964	+		30706	25569	25235	25261							0.12766899127996112
LIVKKEWT	8	Unmodified	_LIVKKEWT_					0	0	0		ENST00000374391.6_1_10:45907703-45907748:+|nuORF	ENST00000374391.6_1_10:45907703-45907748:+|nuORF	ENST00000374391.6_1_10:45907703-45907748:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	509.80584716796875	2	508.810585	1015.60662	0.13693	6.967E-05	-3.6021	-0.0018328	-3.4652	-0.0017631	509.31053630933934	71.088	0.45561	68.368	68.06	68.516	-2.7196					12	8	2	0	0	0	0.028476	1	3296	3296		33.516	10.473	1	7500.6			30707	11034	25236	25262	33957	33957					0.09943807862362064
LIVKTTVQLSH	11	Unmodified	_LIVKTTVQLSH_					0	0	0		nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.572509765625	3	413.587084	1237.73942	0.028246	1.1682E-05	0.88158	0.00036461	0.90982	0.00037629	413.58735170129023	69.089	1.5163	65.599	65.064	66.58	-3.4902					78	30	4	0	0	0	0.026232	1	5097	5097		26.75	17.567	1	225790			30708	4564	25237	25263	33958	33958					0.13006207528360392
LIVLSKLLH	9	Unmodified	_LIVLSKLLH_					0	0	0			REV__ENST00000390345.2_3_7:38393383-38393572:-|nuORF	REV__ENST00000390345.2_3_7:38393383-38393572:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.3246459960938	2	518.349877	1034.6852	1.0389	0.00053853	0.4804	0.00024902	1.5193	0.00078755	518.3509016055477	69.525	0.24915	66.711	66.562	66.811	-2.8143					6	4	2	0	0	0	0.027456	1	3089	3089		35.201	22.242	1	11335	+		30709	25235	25238	25264	33959	33959					0.1692466016745584
LIVLTIAHF	9	Unmodified	_LIVLTIAHF_					0	0	0			REV__tr|A0A7D6W0F6|A0A7D6W0F6_9CLOTUbiAfamilyprenyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23545PE=3SV=1	REV__tr|A0A7D6W0F6|A0A7D6W0F6_9CLOTUbiAfamilyprenyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23545PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.8379516601562	2	513.820953	1025.62735	1.276	0.00065565	-1.7402	-0.00089415	-0.46416	-0.0002385	513.8203198923313	111.81	0.59656	111.81	111.51	112.11	0					28	12	3	0	0	0	0.027462	1	12688	12688		28.254	7.7724	1	541230	+		30710	31856	25239	25265	33960	33960					0.11556398242032628
LIVLTIAHF	9	Unmodified	_LIVLTIAHF_					0	0	0			REV__tr|A0A7D6W0F6|A0A7D6W0F6_9CLOTUbiAfamilyprenyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23545PE=3SV=1	REV__tr|A0A7D6W0F6|A0A7D6W0F6_9CLOTUbiAfamilyprenyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23545PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.8379516601562	2	513.820953	1025.62735	1.1981	0.0006156	4.3934	0.0022574	5.5915	0.002873	513.823312946114	111.65	0.18243	111.65	111.51	111.7	0					6	3	2	0	0	0	0.027462	1	12688	12688		28.254	7.7724	1	159430	+		30711	31856	25239	25265	33961	33961					0.11556398242032628
LIVMIMVPVNL	11	Unmodified	_LIVMIMVPVNL_					0	0	0		tr|A0A7D6VSQ1|A0A7D6VSQ1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11535PE=4SV=1	tr|A0A7D6VSQ1|A0A7D6VSQ1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11535PE=4SV=1	tr|A0A7D6VSQ1|A0A7D6VSQ1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11535PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.8982238769531	3	414.583517	1240.72872	-0.42178	-0.00017486	-2.7065	-0.0011221	-3.1282	-0.0012969	414.58248521213653	40.418	0.99434	37.464	37.263	38.257	-2.9541					29	18	3	0	0	0	0.025909	1	1786	1786		17.833	0.6664	1	67978			30712	35046	25240	25266	33962	33962					0.11798765558091873
LIVMKKNP	8	Unmodified	_LIVMKKNP_					0	0	0			REV__tr|A0A553SJS5|A0A553SJS5_NIACICarbonicanhydraseOS=NialliacirculansOX=1397GN=CEQ21_17335PE=3SV=1	REV__tr|A0A553SJS5|A0A553SJS5_NIACICarbonicanhydraseOS=NialliacirculansOX=1397GN=CEQ21_17335PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	470.81207275390625	2	471.793881	941.573209	0.93796	0.00044253	-1.6355	-0.0007716	-0.6975	-0.00032908	471.79386083060604	66.039	0.29707	63.343	63.17	63.467	-2.6958					6	5	2	0	0	0	0.028476	1	5103	5103		13.775	0	1	11726	+		30713	30038	25241	25267	33963	33963					0.1000848281881872
LIVMLLGLKPT	11	Unmodified	_LIVMLLGLKPT_					0	0	0			REV__ENST00000492706.5_1_X:54951111-54953173:+|nuORF	REV__ENST00000492706.5_1_X:54951111-54953173:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	599.3792114257812	2	599.385603	1196.75665	-5.1251	-0.0030719	-3.2504	-0.0019482	-8.3755	-0.0050201	599.3837594263146	163.98	0.39844	162.59	162.3	162.69	-1.3925					19	8	3	0	0	0	0.68684	1	14300	14300		34.173	7.4796	1	1825400	+		30714	16834	25242	25268	33964	33964					0.16614411809814555
LIVNSVILI	9	Unmodified	_LIVNSVILI_					0	0	0		ENST00000536703.5_1_12:75892569-75892755:+|nuORF;ENSG00000139278|ENST00000266659|GLIPR1	ENST00000536703.5_1_12:75892569-75892755:+|nuORF	ENST00000536703.5_1_12:75892569-75892755:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	492.330322265625	2	492.328611	982.642668	0.73144	0.00036011	1.0531	0.00051848	1.7845	0.00087858	492.3289718100356	157.57	0.84967	157.57	157.3	158.15	0					34	16	3	0	0	0	0.55588	1	18454	18454		37.159	0	1	85973			30715	4761	25243	25269	33965	33965					0.1506526503923169
LIVPNDKKKV	10	Unmodified	_LIVPNDKKKV_					0	0	0		tr|A0A553SQV6|A0A553SQV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07360PE=4SV=1	tr|A0A553SQV6|A0A553SQV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07360PE=4SV=1	tr|A0A553SQV6|A0A553SQV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07360PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	577.36767578125	2	577.368798	1152.72304	-5.5665	-0.0032139	2.1457	0.0012388	-3.4208	-0.0019751	577.369928690125	160.74	1.397	160.51	160.13	161.53	-0.22696					95	27	5	0	0	0	0.6104	3	16346	16346;16358;16382		40.778	4.9302	1	1195800			30716	34202	25244	25270	33966;33967;33968	33966					0.15279126362247553
LIVPNDKKKV	10	Unmodified	_LIVPNDKKKV_					0	0	0		tr|A0A553SQV6|A0A553SQV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07360PE=4SV=1	tr|A0A553SQV6|A0A553SQV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07360PE=4SV=1	tr|A0A553SQV6|A0A553SQV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07360PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	577.3662109375	2	577.368798	1152.72304	-6.9908	-0.0040363	3.1619	0.0018256	-3.8289	-0.0022107	577.3704843168063	161.9	1.6912	160.28	159.86	161.55	-1.6239					125	44	4	0	0	0	0.71192	1	15996	15996		29.15	1.2673	1	1020600			30717	34202	25244	25270	33969	33969					0.15279126362247553
LIVPNSNG	8	Unmodified	_LIVPNSNG_					0	0	0		ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	ENSG00000171223|ENST00000302754|JUNB	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.2174987792969	2	407.226885	812.439217	0.79339	0.00032309	0.91487	0.00037256	1.7083	0.00069565	407.2274665813726	55.91	0.16807	55.91	55.764	55.932	0					6	3	2	0	0	0	0.028476	1	4589	4589		25.45	8.7452	1	35304			30718	7187	25245	25271	33970	33970					0.025495403176250875
LIVPQKGNL	9	Unmodified	_LIVPQKGNL_					0	0	0		ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	MULTI-SECPEP	OvCa9_classI_Rep2	2	490.7367248535156	2	491.30821	980.601866	0.34783	0.00017089	0.16953	8.3294E-05	0.51736	0.00025418	491.30768928804474	77.829	1.4303	76.04	75.519	76.95	-1.7894					41	27	2	0	0	0	0.027456	1	6511	6511		47.916	5.5195	1	113650			30719	3002	25246	25272	33971	33971					0.11078923719617251
LIVPRWAQG	9	Unmodified	_LIVPRWAQG_					0	0	0		tr|A0A7D6VNT5|A0A7D6VNT5_9CLOTPTSfructosetransportersubunitIICOS=ClostridiumintestinaleOX=36845GN=HZF06_13940PE=4SV=1	tr|A0A7D6VNT5|A0A7D6VNT5_9CLOTPTSfructosetransportersubunitIICOS=ClostridiumintestinaleOX=36845GN=HZF06_13940PE=4SV=1	tr|A0A7D6VNT5|A0A7D6VNT5_9CLOTPTSfructosetransportersubunitIICOS=ClostridiumintestinaleOX=36845GN=HZF06_13940PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.8221435546875	2	520.306001	1038.59745	0.94238	0.00049032	3.5218	0.0018324	4.4642	0.0023228	520.3075343526568	133.15	0.18327	133.15	132.99	133.17	0					5	3	2	0	0	0	0.027462	1	15470	15470		12.959	0	1	163630			30720	34725	25247	25273	33972	33972					0.07969459296691639
LIVRDKQF	8	Unmodified	_LIVRDKQF_					0	0	0			REV__tr|A0A7D6ZT99|A0A7D6ZT99_9CLOTRibosomematurationfactorRimMOS=ClostridiumintestinaleOX=36845GN=rimMPE=3SV=1	REV__tr|A0A7D6ZT99|A0A7D6ZT99_9CLOTRibosomematurationfactorRimMOS=ClostridiumintestinaleOX=36845GN=rimMPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	509.8033447265625	2	509.805834	1017.59712	-1.3099	-0.00066782	-2.9211	-0.0014892	-4.231	-0.002157	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.75661	1	11099	11099		19.36	1.995	1	99460	+		30721	32203	25248	25274	33973	33973					0.08902039576844345
LIVRQWQLR	9	Unmodified	_LIVRQWQLR_					0	0	0			REV__ENST00000441433.1_1_7:26961755-26962307:+|nuORF	REV__ENST00000441433.1_1_7:26961755-26962307:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3692016601562	2	606.372207	1210.72986	-3.14	-0.001904	-1.1627	-0.00070505	-4.3027	-0.0026091	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.6653	1	14855	14855		24.203	0.68005	1	257720	+		30722	25844	25249	25275	33974	33974					0.13292484033490837
LIVRVLVRA	9	Unmodified	_LIVRVLVRA_					0	0	0		ENSG00000164850|ENST00000397088|GPER1	ENSG00000164850|ENST00000397088|GPER1	ENSG00000164850|ENST00000397088|GPER1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.8204345703125	2	519.860944	1037.70733	3.3628	0.0017482	-4.0357	-0.002098	-0.67291	-0.00034982	519.8594380212852	132.98	0.64035	131.48	131.24	131.88	-1.5015					26	12	3	0	0	0	0.027462	1	12827	12827		12.207	0.69583	1	38631			30723	6491	25250	25276	33975	33975					0.18998884635902868
LIVSGAQYEA	10	Unmodified	_LIVSGAQYEA_					0	0	0			REV__nc|ENSG00000129219|O14939-4|PLD2	REV__nc|ENSG00000129219|O14939-4|PLD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.3851928710938	2	525.776939	1049.53933	0.85958	0.00045195	0.21695	0.00011407	1.0765	0.00056602	525.7769675458782	155.44	0.66565	155.44	155.17	155.84	0					23	12	3	0	0	0	0.026826	1	18255	18255		29.17	2.374	1	46401	+		30724	28842	25251	25277	33976	33976					0.016537328607682866
LIVSVAQHLI	10	Unmodified	_LIVSVAQHLI_					0	0	0			REV__ENST00000592395.5_1_19:1612394-1615452:-|nuORF	REV__ENST00000592395.5_1_19:1612394-1615452:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	546.8390502929688	2	546.842416	1091.67028	-7.0439	-0.0038519	3.2968	0.0018028	-3.7471	-0.0020491	546.8440760274939	158.88	1.6198	157.61	157.26	158.88	-1.267					96	31	5	0	0	0	0.75313	1	13781	13781		24.519	2.5593	1	890150	+		30725	16904	25252	25278	33977	33977					0.12811168299458586
LIVSYTSI	8	Unmodified	_LIVSYTSI_					0	0	0			REV__tr|A0A553SIK8|A0A553SIK8_NIACICapsularbiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_15020PE=3SV=1	REV__tr|A0A553SIK8|A0A553SIK8_NIACICapsularbiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_15020PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	448.25921630859375	2	448.260394	894.506234	0.91253	0.00040905	-3.8894	-0.0017435	-2.9769	-0.0013344	448.25856617736815	142.24	1.5311	142.01	141.52	143.05	-0.22696					82	30	4	0	0	0	0.74679	1	14284	14284		28.254	2.8041	1	131560	+		30726	29901	25253	25279	33978	33978					0.05476150808715374
LIVTAIVSN	9	Unmodified	_LIVTAIVSN_					0	0	0		tr|A0A7D6ZXI8|A0A7D6ZXI8_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13445PE=4SV=1	tr|A0A7D6ZXI8|A0A7D6ZXI8_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13445PE=4SV=1	tr|A0A7D6ZXI8|A0A7D6ZXI8_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13445PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	465.2846984863281	2	465.286943	928.559333	-2.7433	-0.0012764	-0.30458	-0.00014172	-3.0479	-0.0014181	465.28670210862947	142.67	1.0374	141.66	141.38	142.42	-1.0106					57	20	4	0	0	0	0.53483	2	11835	11835;11841		39.253	2.4902	1	145060			30727	35882	25254	25280	33979;33980	33979					0.09219528591370363
LIVTDNLVI	9	Unmodified	_LIVTDNLVI_					0	0	0		nc|ENSG00000121753|O60241-4|ADGRB2;nc|ENSG00000121753|O60241-3|ADGRB2;nc|ENSG00000121753|O60241-2|ADGRB2;ENSG00000121753|ENST00000373658|ADGRB2	nc|ENSG00000121753|O60241-4|ADGRB2	nc|ENSG00000121753|O60241-4|ADGRB2	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.73065185546875	2	500.307875	998.601197	1.0115	0.00050604	-2.2539	-0.0011276	-1.2424	-0.00062158	500.307061222698	121.97	0.89085	120.95	120.64	121.53	-1.0286					27	16	3	0	0	0	0.027462	1	9362	9362		23.042	0	1	33580			30728	3498	25255	25281	33981	33981					0.10184084279887884
LIVTDNLVI	9	Unmodified	_LIVTDNLVI_					0	0	0		nc|ENSG00000121753|O60241-4|ADGRB2;nc|ENSG00000121753|O60241-3|ADGRB2;nc|ENSG00000121753|O60241-2|ADGRB2;ENSG00000121753|ENST00000373658|ADGRB2	nc|ENSG00000121753|O60241-4|ADGRB2	nc|ENSG00000121753|O60241-4|ADGRB2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	500.307875	998.601197	-1.2796	-0.00064019	1.5187	0.00075983	0.23914	0.00011964	500.30837450813425	121.06	0.69096	120.86	120.61	121.3	-0.19718	-0.048455	0.0011873	NaN	23.042	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22898			30729	3498	25255	25281							0.10184084279887884
LIVTKNKM	8	Unmodified	_LIVTKNKM_					0	0	0			REV__tr|A0A553SHR0|A0A553SHR0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13420PE=4SV=1	REV__tr|A0A553SHR0|A0A553SHR0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13420PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.79437255859375	2	473.791338	945.568123	1.3226	0.00062663	2.592	0.0012281	3.9146	0.0018547	473.79246967857927	140.98	1.2485	139.51	139.2	140.44	-1.4627					55	23	3	0	0	0	0.75241	1	13758	13758		25.45	2.4077	1	76666	+		30730	29826	25256	25282	33982	33982					0.09316178956203203
LIVTRSLTE	9	Unmodified	_LIVTRSLTE_					0	0	0			REV__ENST00000447880.1_1_2:239336110-239336368:-|nuORF	REV__ENST00000447880.1_1_2:239336110-239336368:-|nuORF	MSMS	OvCa99_classI_Rep5	1	516.3072509765625	2	516.308406	1030.60226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.665	1	23.665	23.165	24.165	0								0	0	0	0.19941	1	358	358		26.693	0	1		+		30731	25923	25257	25283	33983	33983					0.08818298648793643
LIVVAKYGIF	10	Unmodified	_LIVVAKYGIF_					0	0	0		ENST00000541186.5_1_12:118796738-118796810:-|nuORF	ENST00000541186.5_1_12:118796738-118796810:-|nuORF	ENST00000541186.5_1_12:118796738-118796810:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	561.8438110351562	2	561.84971	1121.68487	-5.3491	-0.0030054	-1.8492	-0.001039	-7.1983	-0.0040444	561.8485776281088	152.58	1.5019	151.61	151.19	152.7	-0.97299					81	30	4	0	0	0	0.80532	1	13132	13132		18.324	2.6826	1	218830			30732	13463	25258	25284	33984	33984					0.12889240447611883
LIVVLPSKH	9	Unmodified	_LIVVLPSKH_					0	0	0			REV__ENSG00000176895|ENST00000641490|OR51A7	REV__ENSG00000176895|ENST00000641490|OR51A7	MULTI-MSMS	OvCa9_classI_Rep2	2	503.3260803222656	2	503.326402	1004.63825	0.14036	7.0648E-05	-0.73987	-0.0003724	-0.59951	-0.00030175	503.32594865659956	112.82	1.9244	112.7	112.28	114.2	-0.12174					111	38	5	0	0	0	0.32337	3	10720	10689;10720;10738		60.294	13.03	1	946430	+		30733	21974	25259	25285	33985;33986;33987	33986					0.13611800616331493
LIVVLPSKH	9	Unmodified	_LIVVLPSKH_					0	0	0			REV__ENSG00000176895|ENST00000641490|OR51A7	REV__ENSG00000176895|ENST00000641490|OR51A7	MULTI-MSMS	OvCa9_classI_Rep3	3	503.32568359375	2	503.326402	1004.63825	0.16809	8.4607E-05	-0.79943	-0.00040237	-0.63134	-0.00031777	503.32592163990955	113.76	2.5159	112.69	112.25	114.76	-1.0753					117	49	4	0	0	0	0.19716	2	8363	8363;8392		76.847	7.5501	1	1085400	+		30734	21974	25259	25285	33988;33989	33988					0.13611800616331493
LIVVQELITNI	11	Unmodified	_LIVVQELITNI_					0	0	0			REV__nc|ENSG00000125675|P42263|GRIA3	REV__nc|ENSG00000125675|P42263|GRIA3	MULTI-MSMS	OvCa9_classI_Rep4_	4	627.8849487304688	2	627.887021	1253.75949	-6.1904	-0.0038869	3.1797	0.0019965	-3.0107	-0.0018904	627.888871662782	159.72	1.1788	158.11	157.75	158.93	-1.6101					65	26	3	0	0	0	0.71498	1	15780	15780		24.519	0.99649	1	136730	+		30735	18737	25260	25286	33990	33990					0.14275958468329009
LIVVTIDI	8	Unmodified	_LIVVTIDI_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2;nc|ENSG00000257743|Q2M2H8-3|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	443.2738342285156	2	443.286411	884.55827	1.1758	0.00052121	0.38445	0.00017042	1.5602	0.00069163	443.2867499406486	139.56	0.26152	138.06	137.84	138.1	-1.4952					5	4	2	0	0	0	0.028476	1	13595	13595		3.9852	0	1	9473.5			30736	9475	25261	25287	33991	33991					0.11137314222469286
LIVYNFLLL	9	Unmodified	_LIVYNFLLL_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MULTI-MSMS	OvCa99_classI_Rep5	1	554.8477783203125	2	554.344261	1106.67397	1.9613	0.0010872	1.2436	0.00068939	3.2049	0.0017766	554.3445600732562	134.41	1.7792	134.41	133.86	135.64	0					101	38	5	0	0	0	0.32337	1	15670	15670		60.294	1.512	1	1289500	+		30737	19179	25262	25288	33992	33992					0.12489838073338433
LIWFVGII	8	Unmodified	_LIWFVGII_					0	0	0			REV__chr20:49135931-49143854|113|13.45|0.47|4.83|-|2|TE_info:Looper,Looper_dup505,PiggyBac,DNA,donor,-,49143854,49145139|STAU1,None|4	REV__chr20:49135931-49143854|113|13.45|0.47|4.83|-|2|TE_info:Looper,Looper_dup505,PiggyBac,DNA,donor,-,49143854,49145139|STAU1,None|4	MULTI-MSMS	OvCa9_classI_Rep3	3	480.7967224121094	2	480.799489	959.584425	-0.37436	-0.00017999	-3.9767	-0.001912	-4.351	-0.002092	480.7973622689828	116.04	2.9694	115	114.65	117.62	-1.0414					124	59	3	0	0	0	0.69862	1	8663	8663		43.626	0	1	286570	+		30738	16021	25263	25289	33993	33993					0.1030162818460667
LIWGKFVLY	9	Unmodified	_LIWGKFVLY_					0	0	0		ENSG00000111684|ENST00000261407|LPCAT3;nc|ENSG00000111684|Q6P1A2-2|LPCAT3	ENSG00000111684|ENST00000261407|LPCAT3	ENSG00000111684|ENST00000261407|LPCAT3	MULTI-MSMS	OvCa9_classI_Rep3	3	569.8349609375	2	569.836603	1137.65865	-0.6563	-0.00037398	-3.6591	-0.0020851	-4.3154	-0.0024591	569.8345222869018	99.284	4.3485	97.599	97.322	101.67	-1.685					272	84	6	0	0	0	0.27464	1	6847	6847		65.897	2.5912	1	12084000			30739	2844	25264	25290	33994	33994					0.09532971276121316
LIWGRKVL	8	Unmodified	_LIWGRKVL_					0	0	0			REV__ENST00000274498.8_1_5:142603375-142603492:+|nuORF	REV__ENST00000274498.8_1_5:142603375-142603492:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.8202209472656	2	492.821287	983.628021	-0.15633	-7.7044E-05	-4.3125	-0.0021253	-4.4689	-0.0022023	492.8190082291614	62.974	3.1431	59.501	59.195	62.338	-3.4731					139	64	4	0	0	0	0.67106	1	4413	4413		49.211	8.6382	1	1132000	+		30740	24089	25265	25291	33995	33995					0.13555237681737253
LIWHVRCL	8	Carbamidomethyl (C)	_LIWHVRC(Carbamidomethyl (C))L_	LIWHVRC(1)L		LIWHVRC(69)L		0	1	0		nc|ENSG00000106852|Q9UPM6|LHX6;ENSG00000106852|ENST00000394319|LHX6;nc|ENSG00000106852|Q9UPM6-2|LHX6;nc|ENSG00000106852|Q9UPM6-5|LHX6;nc|ENSG00000106852|Q9UPM6-4|LHX6	nc|ENSG00000106852|Q9UPM6|LHX6	nc|ENSG00000106852|Q9UPM6|LHX6	MULTI-MSMS	OvCa99_classI_Rep5	1	549.30419921875	2	548.807854	1095.60115	1.8168	0.00099707	-4.2554	-0.0023354	-2.4386	-0.0013383	548.8052379084394	137.7	0.95464	137.7	137.45	138.4	0					44	20	3	0	0	0	0.57589	1	16099	16099		69.093	8.799	1	380180			30741	2578	25266	25292	33996	33996	23				0.05717805798894915
LIWLFLWI	8	Unmodified	_LIWLFLWI_					0	0	0		tr|A0A553SFU4|A0A553SFU4_NIACIPhosphatasePAP2familyproteinOS=NialliacirculansOX=1397GN=CEQ21_09515PE=4SV=1	tr|A0A553SFU4|A0A553SFU4_NIACIPhosphatasePAP2familyproteinOS=NialliacirculansOX=1397GN=CEQ21_09515PE=4SV=1	tr|A0A553SFU4|A0A553SFU4_NIACIPhosphatasePAP2familyproteinOS=NialliacirculansOX=1397GN=CEQ21_09515PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.2691040039062	2	552.336239	1102.65792	2.0735	0.0011453	-4.0943	-0.0022614	-2.0208	-0.0011161	552.8351492171234	137.18	0.43289	137.18	136.87	137.3	0					19	8	3	0	0	0	0.028476	1	16004	16004		33.493	20.534	1	42785			30742	33079	25267	25293	33997	33997					0.11070176627072215
LIWLVACCFP	10	Unmodified	_LIWLVACCFP_					0	0	0		ENSG00000173302|ENST00000309926|GPR148	ENSG00000173302|ENST00000309926|GPR148	ENSG00000173302|ENST00000309926|GPR148	MULTI-SECPEP	OvCa9_classI_Rep4_	4	582.31884765625	2	582.800848	1163.58714	-1.3111	-0.00076414	-2.839	-0.0016546	-4.1501	-0.0024187	582.7989257545426	95.943	1.2671	93.517	93.055	94.322	-2.4256					62	23	4	0	0	0	0.026578	1	8430	8430		65.897	4.9255	1	137200			30743	7367	25268	25294	33998	33998					0.011893922555827885
LIWLVACCFP	10	Unmodified	_LIWLVACCFP_					0	0	0		ENSG00000173302|ENST00000309926|GPR148	ENSG00000173302|ENST00000309926|GPR148	ENSG00000173302|ENST00000309926|GPR148	MULTI-MATCH	OvCa9_classI_Rep2	2		2	582.800848	1163.58714	-0.62742	-0.00036566	-3.8572	-0.002248	-4.4847	-0.0026137	582.7985522927144	94.428	1.0906	93.328	92.958	94.048	-1.0995	-0.086778	-0.00071416	NaN	65.897	48	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135030			30744	7367	25268	25294							0.011893922555827885
LIWLVACCFP	10	Unmodified	_LIWLVACCFP_					0	0	0		ENSG00000173302|ENST00000309926|GPR148	ENSG00000173302|ENST00000309926|GPR148	ENSG00000173302|ENST00000309926|GPR148	MULTI-MATCH	OvCa9_classI_Rep3	3		2	582.800848	1163.58714	-1.8166	-0.0010587	-2.2508	-0.0013118	-4.0674	-0.0023705	582.7993851372335	95.295	1.2895	93.399	92.914	94.204	-1.8956	-0.015812	0.0011583	NaN	65.897	62	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159280			30745	7367	25268	25294							0.011893922555827885
LIWPRKPHF	9	Unmodified	_LIWPRKPHF_					0	0	0			REV__COPA|p.H613Tfs*3|1|0.05|ENSG00000122218|chr1:160298986-160298986|C/-|frameshift_variant	REV__COPA|p.H613Tfs*3|1|0.05|ENSG00000122218|chr1:160298986-160298986|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	596.7676391601562	2	597.350743	1192.68693	-0.33508	-0.00020016	-3.997	-0.0023876	-4.332	-0.0025877	597.3479283931425	92.967	0.78723	91.005	90.79	91.577	-1.9617					26	15	2	0	0	0	0.027462	1	5972	5972		26.796	0	1	75108	+		30746	16226	25269	25295	33999	33999					0.09829713976068888
LIYASVSV	8	Unmodified	_LIYASVSV_					0	0	0		ENSG00000155008|ENST00000373173|APOOL	ENSG00000155008|ENST00000373173|APOOL	ENSG00000155008|ENST00000373173|APOOL	MULTI-MSMS	OvCa9_classI_Rep3	3	426.2464599609375	2	426.247286	850.48002	-1.1759	-0.00050123	-1.8651	-0.00079498	-3.041	-0.0012962	426.2464135300909	139.12	1.5749	138.06	137.54	139.11	-1.0595					80	31	4	0	0	0	0.74361	1	11463	11463		29.842	8.1392	1	422340			30747	5763	25270	25296	34000	34000					0.04879881637248218
LIYEAFST	8	Unmodified	_LIYEAFST_					0	0	0			REV__DNMT1|p.D701Tfs*87|1|0.11|ENSG00000130816|chr19:10151514-10151515|-/CTTGACTTGCATGGTCCTCTGTTACTTAAAGT|frameshift_variant;REV__nc|ENSG00000130816|P26358-3|DNMT1	REV__DNMT1|p.D701Tfs*87|1|0.11|ENSG00000130816|chr19:10151514-10151515|-/CTTGACTTGCATGGTCCTCTGTTACTTAAAGT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	472.2392883300781	2	472.242201	942.469849	0.9588	0.00045279	-2.4644	-0.0011638	-1.5056	-0.00071101	472.2409517995704	158.06	1.037	158.06	157.8	158.84	0					33	21	2	0	0	0	0.73626	1	18541	18541		33.516	1.9858	1	44549	+		30748	16324;18974	25271	25297	34001	34001					-0.0036872608800422313
LIYEYDTL	8	Unmodified	_LIYEYDTL_					0	0	0			REV__tr|A0A7D7A336|A0A7D7A336_9CLOTRestrictionendonucleaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20420PE=4SV=1	REV__tr|A0A7D7A336|A0A7D7A336_9CLOTRestrictionendonucleaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20420PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.8107299804688	2	515.260591	1028.50663	0.2064	0.00010635	-4.0579	-0.0020909	-3.8515	-0.0019845	515.2582588230364	115.19	0.7117	113.8	113.36	114.07	-1.3977					21	13	2	0	0	0	0.028476	1	10712	10712		60.294	8.9585	1	25575	+		30749	32567	25272	25298	34002	34002					-0.006484742620841644
LIYFQGNS	8	Unmodified	_LIYFQGNS_					0	0	0		nc|ENSG00000282939|A0A1B0GXF2|TRBV7-2	nc|ENSG00000282939|A0A1B0GXF2|TRBV7-2	nc|ENSG00000282939|A0A1B0GXF2|TRBV7-2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.2856750488281	2	471.239993	940.465432	-0.090689	-4.2736E-05	0.5005	0.00023586	0.40981	0.00019312	471.23984383325933	92.24	1.567	89.698	89.111	90.678	-2.5425					64	30	3	0	0	0	0.028476	1	7941	7941		40.573	4.9543	1	200920			30750	15377	25273	25299	34003	34003					-0.007181905109064246
LIYFQGNS	8	Unmodified	_LIYFQGNS_					0	0	0		nc|ENSG00000282939|A0A1B0GXF2|TRBV7-2	nc|ENSG00000282939|A0A1B0GXF2|TRBV7-2	nc|ENSG00000282939|A0A1B0GXF2|TRBV7-2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	471.239993	940.465432	1.1962	0.0005637	-0.89919	-0.00042373	0.29703	0.00013997	471.2393873657428	91.087	1.307	89.852	89.439	90.746	-1.2355	0.076875	-0.0001194	NaN	31.955	57	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100070			30751	15377	25273	25299							-0.007181905109064246
LIYGDQYAF	9	Unmodified	_LIYGDQYAF_					0	0	0		tr|A0A553SPU0|A0A553SPU0_NIACIAlpha-glycosidaseOS=NialliacirculansOX=1397GN=CEQ21_09275PE=4SV=1	tr|A0A553SPU0|A0A553SPU0_NIACIAlpha-glycosidaseOS=NialliacirculansOX=1397GN=CEQ21_09275PE=4SV=1	tr|A0A553SPU0|A0A553SPU0_NIACIAlpha-glycosidaseOS=NialliacirculansOX=1397GN=CEQ21_09275PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	545.265869140625	2	545.266207	1088.51786	1.1663	0.00063596	0.3166	0.00017263	1.4829	0.00080859	545.266227596652	144.33	0.44228	144.33	144.06	144.5	0					12	8	2	0	0	0	0.46377	1	16870	16870		45.952	0	1	74648			30752	34084	25274	25300	34004	34004					-0.02285652167961416
LIYGTPRAA	9	Unmodified	_LIYGTPRAA_					0	0	0		ENSG00000188191|ENST00000537384|PRKAR1B;ENSG00000108946|ENST00000589228|PRKAR1A;nc|ENSG00000108946|P10644-2|PRKAR1A	ENSG00000188191|ENST00000537384|PRKAR1B;ENSG00000108946|ENST00000589228|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MSMS	OvCa99_classI_Rep5	1	481.2786865234375	2	481.276909	960.539266	-0.84272	-0.00040558	0.22296	0.00010731	-0.61975	-0.00029827	481.27694280437447	64.233	1.1865	64.233	63.607	64.793	0					64	28	4	0	0	0	0.083631	1	5822	5822		101.6	19.296	1	5924400			30753	2687;8457	25275	25301	34005	34005					0.05741777651405755
LIYHDKKE	8	Unmodified	_LIYHDKKE_					0	0	0			REV__nc|ENSG00000107736|Q9H251-4|CDH23	REV__nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-MSMS	OvCa9_classI_Rep3	3	523.288330078125	2	523.287474	1044.5604	-0.90769	-0.00047498	0.24502	0.00012821	-0.66267	-0.00034677	523.287473398846	95.602	1.4917	93.774	93.13	94.621	-1.8286					54	29	2	0	0	0	0.62934	1	6254	6254		57.811	0	1	653760	+		30754	17855	25276	25302	34006	34006					0.039897429602888224
LIYHLFSMS	9	Oxidation (M)	_LIYHLFSM(Oxidation (M))S_		LIYHLFSM(1)S		LIYHLFSM(80)S	0	0	1			REV__tr|A0A7D7A4Z7|A0A7D7A4Z7_9CLOTCholoylglycinehydrolasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03995PE=3SV=1	REV__tr|A0A7D7A4Z7|A0A7D7A4Z7_9CLOTCholoylglycinehydrolasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03995PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	563.7877197265625	2	563.78371	1125.55287	0.63818	0.00035979	3.0799	0.0017364	3.718	0.0020962	563.7852360212007	105.36	1.9759	105.36	104.79	106.76	0					88	44	4	0	0	0	0.17908	1	11816	11816		79.939	8.6435	1	5028200	+		30755	32621	25277	25303	34007	34007		721			-0.0048873263162931835
LIYHLFSMS	9	Oxidation (M)	_LIYHLFSM(Oxidation (M))S_					0	0	1			REV__tr|A0A7D7A4Z7|A0A7D7A4Z7_9CLOTCholoylglycinehydrolasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03995PE=3SV=1	REV__tr|A0A7D7A4Z7|A0A7D7A4Z7_9CLOTCholoylglycinehydrolasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03995PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	563.78371	1125.55287	0.067439	3.8021E-05	2.7271	0.0015375	2.7945	0.0015755	563.7850129473254	106.12	1.4429	105.68	105.4	106.84	-0.43642	0.10111	-0.00024547	NaN	79.939	61	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177110	+		30756	32621	25277	25303				721			-0.0048873263162931835
LIYHREEKRWR	11	Unmodified	_LIYHREEKRWR_					0	0	0		CLEC5A|p.Q155Gfs*13|1|0.06|ENSG00000258227|chr7:141930208-141930209|-/CC|frameshift_variant;nc|ENSG00000258227|Q9NY25-2|CLEC5A;ENSG00000258227|ENST00000546910|CLEC5A	CLEC5A|p.Q155Gfs*13|1|0.06|ENSG00000258227|chr7:141930208-141930209|-/CC|frameshift_variant	CLEC5A|p.Q155Gfs*13|1|0.06|ENSG00000258227|chr7:141930208-141930209|-/CC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2796020507812	3	529.295186	1584.86373	-0.011018	-5.8318E-06	3.019	0.0015979	3.0079	0.0015921	529.2967741470203	31.477	0.49583	31.477	31.311	31.807	0					16	9	3	0	0	0	0.026461	1	1322	1322		12.957	9.7462	1	92573			30757	584	25278	25304	34008	34008					0.09469098068393578
LIYIHVYIS	9	Unmodified	_LIYIHVYIS_					0	0	0			REV__ENST00000565493.1_1_20:34634032-34634152:-|nuORF	REV__ENST00000565493.1_1_20:34634032-34634152:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.7835083007812	2	560.823692	1119.63283	1.4551	0.00081605	-4.2114	-0.0023618	-2.7563	-0.0015458	560.821428114553	103.34	0.45834	103.34	103.05	103.51	0					21	10	3	0	0	0	0.027462	1	11534	11534		18.324	0	1	356840	+		30758	27686	25279	25305	34009	34009					0.07780077033839916
LIYISIYTYII	11	Unmodified	_LIYISIYTYII_					0	0	0		L1ME4a_dup12675|chr6:37045387-37045843:+|1.4283673080813548|0.2832341124959364|2.33|429.0|34|3|anti-sense	L1ME4a_dup12675|chr6:37045387-37045843:+|1.4283673080813548|0.2832341124959364|2.33|429.0|34|3|anti-sense	L1ME4a_dup12675|chr6:37045387-37045843:+|1.4283673080813548|0.2832341124959364|2.33|429.0|34|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	458.935791015625	3	458.93549	1373.78464	1.7218	0.00079018	-1.7088	-0.00078422	0.012969	5.9522E-06	458.9346719442003	78.824	1.3808	78.824	78.093	79.474	0					94	33	4	0	0	0	0.67712	1	7986	7986		37.508	1.1905	1	3801800			30759	14620	25280	25306	34010	34010					0.1127001327090511
LIYIYLKI	8	Unmodified	_LIYIYLKI_					0	0	0			REV__ENST00000398148.7_3_19:6413682-6414126:-|nuORF	REV__ENST00000398148.7_3_19:6413682-6414126:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.3035278320312	2	519.833529	1037.6525	1.8094	0.00094061	-3.2264	-0.0016772	-1.417	-0.0007366	519.8316469291716	87.719	0.79213	87.719	87.463	88.255	0					46	18	3	0	0	0	0.028476	1	9278	9278		37.028	16.547	1	1375400	+		30760	25374	25281	25307	34011	34011					0.13518453044594025
LIYLKHTLE	9	Unmodified	_LIYLKHTLE_					0	0	0		ENSG00000057468|ENST00000263187|MSH4	ENSG00000057468|ENST00000263187|MSH4	ENSG00000057468|ENST00000263187|MSH4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.308837890625	2	565.334424	1128.6543	0.79453	0.00044918	-1.3187	-0.00074552	-0.5242	-0.00029635	565.3335078786838	98.784	0.46483	96.459	96.33	96.795	-2.3253					14	8	2	0	0	0	0.027295	1	8804	8804		96.19	11.275	1	41347			30761	1236	25282	25308	34012	34012					0.09511462062573628
LIYLLFKR	8	Unmodified	_LIYLLFKR_					0	0	0			REV__tr|A0A7D7AB64|A0A7D7AB64_9CLOTCation-transportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14125PE=4SV=1	REV__tr|A0A7D7AB64|A0A7D7AB64_9CLOTCation-transportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14125PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.3400268554688	2	533.344595	1064.67464	-6.1907	-0.0033018	-1.8486	-0.00098596	-8.0394	-0.0042878	533.3435201452669	156.94	1.5192	155.39	155.04	156.56	-1.545					135	41	5	0	0	0	0.74679	1	15548	15548		28.254	0	1	1621700	+		30762	32675	25283	25309	34013	34013					0.14488677513008952
LIYLLPEEF	9	Unmodified	_LIYLLPEEF_					0	0	0		ENST00000543897.5_2_12:122962498-122964774:-|nuORF	ENST00000543897.5_2_12:122962498-122964774:-|nuORF	ENST00000543897.5_2_12:122962498-122964774:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.8026733398438	2	568.815533	1135.61651	1.8598	0.0010579	1.2869	0.00073201	3.1467	0.0017899	568.8160819550685	133.6	1.0679	133.6	133.04	134.1	0					49	22	3	0	0	0	0.027255	1	15502	15502		79.939	18.967	1	203300			30763	13500	25284	25310	34014	34014					0.05412951077073558
LIYPNEPII	9	Unmodified	_LIYPNEPII_					0	0	0			REV__CON__P01030	REV__CON__P01030	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.2737426757812	2	536.307875	1070.6012	0.2136	0.00011455	0.49328	0.00026455	0.70688	0.0003791	536.3073353295349	45.251	0.22045	45.251	45.068	45.289	0					9	4	3	0	0	0	0.027462	1	3112	3112		26.796	8.4717	1	89720	+	+	30764	16171	25285	25311	34015	34015					0.06872084279916635
LIYPVPLP	8	Unmodified	_LIYPVPLP_					0	0	0			REV__ENST00000589123.5_2_19:3464049-3464370:+|nuORF	REV__ENST00000589123.5_2_19:3464049-3464370:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	456.26995849609375	2	456.283672	910.552791	-0.67207	-0.00030665	-2.1185	-0.00096665	-2.7906	-0.0012733	456.28326436838455	76.214	0.3603	73.842	73.62	73.98	-2.3715					8	6	2	0	0	0	0.028476	1	3919	3919		33.493	0	1	9799.5	+		30765	27900	25286	25312	34016	34016					0.09393635430660652
LIYPWRNGIV	10	Unmodified	_LIYPWRNGIV_					0	0	0		tr|A0A553SN23|A0A553SN23_NIACINUDIXdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23705PE=3SV=1	tr|A0A553SN23|A0A553SN23_NIACINUDIXdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23705PE=3SV=1	tr|A0A553SN23|A0A553SN23_NIACINUDIXdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23705PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	410.23883056640625	3	410.904636	1229.69208	0.68617	0.00028195	4.4813	0.0018414	5.1674	0.0021233	410.90672616705433	47.964	0.56464	47.964	47.595	48.16	0					20	12	2	0	0	0	0.02706	1	3499	3499		17.468	0	1	117930			30766	33900	25287	25313	34017	34017					0.0864197304802019
LIYQLCGQPP	10	Unmodified	_LIYQLCGQPP_					0	0	0			REV__nc|ENSG00000157152|Q92777-2|SYN2	REV__nc|ENSG00000157152|Q92777-2|SYN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.2765502929688	2	566.296985	1130.57942	2.9651	0.0016791	3.3701	0.0019085	6.3352	0.0035876	566.298037494146	107.83	0.42697	107.83	107.73	108.16	0					11	9	2	0	0	0	0.027056	1	12199	12199		20.947	0	1	243030	+		30767	28946	25288	25314	34018	34018					0.019349562596744363
LIYRLVREKEL	11	Unmodified	_LIYRLVREKEL_					0	0	0		tr|A0A7D6W1C2|A0A7D6W1C2_9CLOTPutativebeta-lysineN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=ablBPE=4SV=1	tr|A0A7D6W1C2|A0A7D6W1C2_9CLOTPutativebeta-lysineN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=ablBPE=4SV=1	tr|A0A7D6W1C2|A0A7D6W1C2_9CLOTPutativebeta-lysineN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=ablBPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.9598388671875	3	477.960921	1430.86093	-5.9329	-0.0028357	2.4838	0.0011872	-3.449	-0.0016485	478.2967649500702	159.34	2.8374	157.75	156.72	159.56	-1.5858					174	71	3	0	0	0	0.72538	1	15820	15820		10.587	0.4829	1	81225			30768	35405	25289	25315	34019	34019					0.16273829890860725
LIYSGKLLLD	10	Unmodified	_LIYSGKLLLD_					0	0	0		nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1;ENST00000570273.5_1_16:56966069-56976120:+|nuORF;ENST00000562914.1_1_16:56966069-56969248:+|nuORF;ENST00000569569.5_1_16:56966069-56970730:+|nuORF;ENST00000568676.5_1_16:56966069-56969519:+|nuORF	nc|ENSG00000051108|Q15011-4|HERPUD1	nc|ENSG00000051108|Q15011-4|HERPUD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.2606201171875	2	567.842082	1133.66961	2.4788	0.0014075	0.30091	0.00017087	2.7797	0.0015784	567.8421109163355	121.79	0.69962	121.79	121.47	122.17	0					28	14	2	0	0	0	0.026602	1	14024	14024		47.96	8.7067	1	100750			30769	1184	25290	25316	34020	34020					0.1081232885976533
LIYSLLSFI	9	Unmodified	_LIYSLLSFI_					0	0	0		ENSG00000170255|ENST00000526914|MRGPRX1	ENSG00000170255|ENST00000526914|MRGPRX1	ENSG00000170255|ENST00000526914|MRGPRX1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.8153076171875	2	534.820618	1067.62668	-1.9948	-0.0010668	-4.3447	-0.0023236	-6.3394	-0.0033905	534.81816875827	44.223	1.5167	41.216	40.693	42.209	-3.0074					45	29	3	0	0	0	0.027462	1	2271	2271		40.573	0	1	167070			30770	7084	25291	25317	34021	34021					0.09557558802316635
LIYSLLSFI	9	Unmodified	_LIYSLLSFI_					0	0	0		ENSG00000170255|ENST00000526914|MRGPRX1	ENSG00000170255|ENST00000526914|MRGPRX1	ENSG00000170255|ENST00000526914|MRGPRX1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	534.820618	1067.62668	-0.56015	-0.00029958	-5.7451	-0.0030726	-6.3052	-0.0033722	534.8174205753327	43.954	0.896	41.244	40.955	41.851	-2.7097	0.014266	-0.00086768	NaN	40.573	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53905			30771	7084	25291	25317							0.09557558802316635
LIYTCAPEF	9	Unmodified	_LIYTCAPEF_					0	0	0		ENSG00000177990|ENST00000324472|DPY19L2	ENSG00000177990|ENST00000324472|DPY19L2	ENSG00000177990|ENST00000324472|DPY19L2	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.82373046875	2	528.757161	1055.49977	2.9105	0.0015389	3.704	0.0019585	6.6145	0.0034974	528.758452340216	89.846	0.33913	89.846	89.681	90.02	0					12	7	2	0	0	0	0.027462	1	9620	9620		18.324	0	1	207290			30772	7725	25292	25318	34022	34022					-0.025761104143157354
LIYVMIINQ	9	Unmodified	_LIYVMIINQ_					0	0	0			REV__tr|A0A7D6VSH7|A0A7D6VSH7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22835PE=4SV=1	REV__tr|A0A7D6VSH7|A0A7D6VSH7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22835PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	554.3475952148438	2	553.817553	1105.62055	1.2284	0.00068032	-0.36609	-0.00020274	0.86233	0.00047757	553.817398411337	113.49	0.4951	113.37	113.12	113.61	-0.11777					12	9	2	0	0	0	0.027462	1	10777	10777		25.45	0	1	20518	+		30773	31504	25293	25319	34023	34023					0.07196717299143529
LIYVTELEK	9	Unmodified	_LIYVTELEK_					0	0	0		nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1;ENSG00000179981|ENST00000580243|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.3421630859375	2	554.31844	1106.62233	-1.4064	-0.00077961	-1.4641	-0.00081158	-2.8705	-0.0015912	554.3173330269484	126.87	0.74486	125.43	125.19	125.94	-1.4357					25	14	2	0	0	0	0.027295	1	12115	12115		84.916	55.074	1	23017			30774	7852	25294	25320	34024	34024					0.07328049588750218
LIYVTELEK	9	Unmodified	_LIYVTELEK_					0	0	0		nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1;ENSG00000179981|ENST00000580243|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	554.31844	1106.62233	1.3254	0.0007347	-4.0395	-0.0022392	-2.7141	-0.0015045	554.3162645985109	125.78	0.69321	125.55	125.36	126.05	-0.23589	0.027428	-0.0012432	NaN	84.916	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24192			30775	7852	25294	25320							0.07328049588750218
LIYVTELEK	9	Unmodified	_LIYVTELEK_					0	0	0		nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1;ENSG00000179981|ENST00000580243|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	554.31844	1106.62233	0.8387	0.00046491	-3.6448	-0.0020204	-2.8061	-0.0015555	554.3163482511283	126.65	0.9929	125.58	125.23	126.22	-1.0715	0.059123	-0.0008057	NaN	84.916	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26648			30776	7852	25294	25320							0.07328049588750218
LKAAKKEY	8	Unmodified	_LKAAKKEY_					0	0	0			REV__nc|ENSG00000067066|P23497|SP100	REV__nc|ENSG00000067066|P23497|SP100	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.7760925292969	2	475.78711	949.559667	0.94635	0.00045026	-1.4711	-0.00069993	-0.52474	-0.00024966	475.7862320617159	113.57	1.4959	112.13	111.66	113.15	-1.4461					55	29	3	0	0	0	0.028476	1	10637	10637		33.516	0	1	158300	+		30777	28726	25295	25321	34025	34025					0.08286948311229025
LKAARRGG	8	Unmodified	_LKAARRGG_					0	0	0			REV__SDK1|p.G1830Rfs*24|1|0.09|ENSG00000146555|chr7:4210109-4210110|-/CAGACAATGGACTC|frameshift_variant;REV__SDK1|p.L1190Afs*107|1|0.14|ENSG00000146555|chr7:4113417-4113418|-/AT|frameshift_variant	REV__SDK1|p.G1830Rfs*24|1|0.09|ENSG00000146555|chr7:4210109-4210110|-/CAGACAATGGACTC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	414.76226806640625	2	414.761761	827.508969	-1.3763	-0.00057084	1.469	0.0006093	0.092716	3.8455E-05	414.7623056204016	140.83	3.4972	139.8	137.66	141.16	-1.0339					138	70	4	0	0	0	0.75915	1	11691	11691		20.482	0	1	1080700	+		30778	20022;29350	25296	25322	34026	34026					0.08831463776903092
LKAAVRPL	8	Unmodified	_LKAAVRPL_					0	0	0			REV__nc|ENSG00000140374|P13804-2|ETFA	REV__nc|ENSG00000140374|P13804-2|ETFA	MULTI-SECPEP	OvCa99_classI_Rep5	1	434.1960144042969	2	434.292362	866.570172	-0.39924	-0.00017339	0.40679	0.00017667	0.0075546	3.2809E-06	434.2924186523112	34.281	0.33107	34.281	34.113	34.444	0					10	6	2	0	0	0	0.028476	1	1655	1655		52.299	0	1	25184	+		30779	19664	25297	25323	34027	34027					0.13154975756322074
LKADMDGPL	9	Unmodified	_LKADMDGPL_					0	0	0		nc|ENSG00000106852|Q9UPM6|LHX6;ENSG00000106852|ENST00000394319|LHX6;nc|ENSG00000106852|Q9UPM6-6|LHX6	nc|ENSG00000106852|Q9UPM6|LHX6	nc|ENSG00000106852|Q9UPM6|LHX6	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2746887207031	2	480.24696	958.479368	2.155	0.001035	-1.4855	-0.00071341	0.66954	0.00032154	480.2471697914953	77.438	0.29167	77.438	77.252	77.544	0					9	6	2	0	0	0	0.027455	1	7804	7804		42.396	1.8235	1	166340			30780	2578	25298	25324	34028	34028					-0.0015328107413097314
LKADMLKR	8	Oxidation (M)	_LKADM(Oxidation (M))LKR_		LKADM(1)LKR		LKADM(69)LKR	0	0	1		ENSG00000232030|ENST00000416929|MAGEB6B	ENSG00000232030|ENST00000416929|MAGEB6B	ENSG00000232030|ENST00000416929|MAGEB6B	MULTI-MSMS	OvCa9_classI_Rep2	2	495.79010009765625	2	495.791869	989.569186	-0.39421	-0.00019544	-3.5481	-0.0017591	-3.9423	-0.0019546	495.7900541387645	75.089	1.6578	73.118	72.796	74.454	-1.9711					83	31	5	0	0	0	0.57734	1	6178	6178		68.787	12.353	1	532910			30781	9289	25299	25325	34029	34029		276			0.07398393325127017
LKADVVFLSP	10	Unmodified	_LKADVVFLSP_					0	0	0		ENSG00000137574|ENST00000260129|TGS1	ENSG00000137574|ENST00000260129|TGS1	ENSG00000137574|ENST00000260129|TGS1	MULTI-SECPEP	OvCa9_classI_Rep3	3	544.2998657226562	2	544.82115	1087.62775	-1.3584	-0.0007401	-2.2912	-0.0012483	-3.6497	-0.0019884	544.8197275093473	92.374	1.131	90.35	90.135	91.266	-2.0241					32	23	2	0	0	0	0.026551	1	5916	5916		60.118	17.722	1	155800			30782	4600	25300	25326	34030	34030					0.08743773171249813
LKAFKKKQKK	10	Unmodified	_LKAFKKKQKK_					0	0	0		ENST00000377028.9_1_13:95091686-95091875:-|nuORF	ENST00000377028.9_1_13:95091686-95091875:-|nuORF	ENST00000377028.9_1_13:95091686-95091875:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	623.9177856445312	2	623.921532	1245.82851	-5.6252	-0.0035097	-0.59822	-0.00037324	-6.2234	-0.0038829	623.9212016444733	162.89	0.18927	162.66	162.59	162.78	-0.22696					12	5	3	0	0	0	0.89674	1	16604	16604		6.7355	3.3255	1	379890			30783	11084	25301	25327	34031	34031					0.21543087278541861
LKAFKKKQKK	10	Unmodified	_LKAFKKKQKK_					0	0	0		ENST00000377028.9_1_13:95091686-95091875:-|nuORF	ENST00000377028.9_1_13:95091686-95091875:-|nuORF	ENST00000377028.9_1_13:95091686-95091875:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	623.9185791015625	2	623.921532	1245.82851	-6.0051	-0.0037467	-1.7642	-0.0011008	-7.7693	-0.0048475	623.9202937363024	164.58	0.86269	163.17	162.86	163.73	-1.4083					55	31	2	0	0	0	0.89674	1	14372	14372		6.7355	0.81444	1	34551			30784	11084	25301	25327	34032	34032					0.21543087278541861
LKAFKKKQKK	10	Unmodified	_LKAFKKKQKK_					0	0	0		ENST00000377028.9_1_13:95091686-95091875:-|nuORF	ENST00000377028.9_1_13:95091686-95091875:-|nuORF	ENST00000377028.9_1_13:95091686-95091875:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	623.921532	1245.82851	-6.0106	-0.0037501	-1.088	-0.00067883	-7.0986	-0.004429	623.9206048037533	164.09	0.18394	162.69	162.59	162.78	-1.4083	0.041801	-0.00061506	NaN	6.7355	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154230			30785	11084	25301	25327							0.21543087278541861
LKAFTYIN	8	Unmodified	_LKAFTYIN_					0	0	0		ENST00000464368.1_1_3:195789435-195792419:-|nuORF;TFRC|p.N733Afs*6|1|0.15|ENSG00000072274|chr3:196052028-196052029|-/GC|frameshift_variant;ENSG00000072274|ENST00000360110|TFRC	ENST00000464368.1_1_3:195789435-195792419:-|nuORF	ENST00000464368.1_1_3:195789435-195792419:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.2593688964844	2	485.273835	968.533118	-0.69641	-0.00033795	-4.3147	-0.0020938	-5.0111	-0.0024317	485.27161703935883	44.466	0.31306	44.466	44.305	44.618	0					13	6	3	0	0	0	0.028476	1	3022	3022		37.159	0	1	165760			30786	1469	25302	25328	34033	34033					0.047592594198818006
LKAGAIALV	9	Unmodified	_LKAGAIALV_					0	0	0			REV__nc|ENSG00000120519|Q0GE19-6|SLC10A7	REV__nc|ENSG00000120519|Q0GE19-6|SLC10A7	MULTI-MSMS	OvCa9_classI_Rep3	3	428.28631591796875	2	428.286746	854.558939	0.99158	0.00042468	-0.9535	-0.00040837	0.038079	1.6309E-05	428.28619958305893	106.07	1.3284	104.72	104.35	105.68	-1.3482					67	25	4	0	0	0	0.53957	1	7470	7470		38.806	0	1	507380	+		30787	18502	25303	25329	34034	34034					0.12584153662169228
LKAGDVVLVI	10	Unmodified	_LKAGDVVLVI_					0	0	0		ENST00000462958.5_1_2:127806104-127810019:-|nuORF;nc|ENSG00000136717|O00499-9|BIN1;nc|ENSG00000136717|O00499-10|BIN1;nc|ENSG00000136717|O00499-7|BIN1;nc|ENSG00000136717|O00499-8|BIN1;nc|ENSG00000136717|O00499-4|BIN1;nc|ENSG00000136717|O00499-6|BIN1;nc|ENSG00000136717|O00499-11|BIN1;nc|ENSG00000136717|O00499-3|BIN1;nc|ENSG00000136717|O00499-2|BIN1;nc|ENSG00000136717|O00499-5|BIN1;ENSG00000136717|ENST00000316724|BIN1	ENST00000462958.5_1_2:127806104-127810019:-|nuORF	ENST00000462958.5_1_2:127806104-127810019:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.3590087890625	2	513.831517	1025.64848	0.74534	0.00038298	0.56009	0.00028779	1.3054	0.00067077	513.8319890570734	152.97	0.49413	152.97	152.75	153.25	0					15	9	2	0	0	0	0.026891	1	17924	17924		31.53	11.533	1	35801			30788	4507	25304	25330	34035	34035					0.13668363550914364
LKAGKLKFII	10	Unmodified	_LKAGKLKFII_					0	0	0		APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB;APOB|p.N3224Tfs*50|1|0.31|ENSG00000084674|chr2:21007197-21007198|-/CTTCTTCATATTCTGCACTGAAG|frameshift_variant;APOB|p.P1331Gfs*27|1|0.03|ENSG00000084674|chr2:21013386-21013387|-/CA|frameshift_variant;APOB|p.S1889Afs*52|1|0.08|ENSG00000084674|chr2:21011204-21011205|-/GGGCTTCTCAACGGCATCTCTCATCTCTAAAGCA|frameshift_variant;APOB|p.S1969Rfs*50|1|0.08|ENSG00000084674|chr2:21010961-21010962|-/GC|frameshift_variant	APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant	APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.3905639648438	2	565.886627	1129.7587	2.4346	0.0013777	-0.47636	-0.00026957	1.9583	0.0011082	566.3877737048826	122.2	1.2459	122.2	121.57	122.81	0					36	26	2	0	0	0	0.02661	1	14105	14105		40.778	3.6191	1	164500			30789	102	25305	25331	34036	34036					0.19901208609940113
LKAGKWKLI	9	Unmodified	_LKAGKWKLI_					0	0	0			REV__ENSG00000001629|ENST00000265742|ANKIB1	REV__ENSG00000001629|ENST00000265742|ANKIB1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.7991943359375	2	528.850045	1055.68554	0.1484	7.848E-05	-4.0212	-0.0021266	-3.8728	-0.0020481	528.8477833611327	37.202	1.0975	34.31	33.993	35.09	-2.8925					33	20	3	0	0	0	0.027462	1	1395	1395		37.159	1.5408	1	51375	+		30790	16363	25306	25332	34037	34037					0.15992079887314503
LKAGPAVPQ	9	Unmodified	_LKAGPAVPQ_					0	0	0		ENST00000229340.9_1_12:120534355-120534604:-|nuORF	ENST00000229340.9_1_12:120534355-120534604:-|nuORF	ENST00000229340.9_1_12:120534355-120534604:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	440.7528991699219	2	440.766178	879.517802	0.89669	0.00039523	2.063	0.00090928	2.9596	0.0013045	440.76724128525086	40.733	0.31618	40.733	40.479	40.795	0					11	6	3	0	0	0	0.027448	1	2476	2476		20.947	0	1	145170			30791	9718	25307	25333	34038	34038					0.07322392622711504
LKAHKAVIS	9	Unmodified	_LKAHKAVIS_					0	0	0		ENST00000554644.1_1_14:93723510-93760888:-|nuORF;nc|ENSG00000011114|Q9P203-3|BTBD7;ENSG00000011114|ENST00000334746|BTBD7	ENST00000554644.1_1_14:93723510-93760888:-|nuORF	ENST00000554644.1_1_14:93723510-93760888:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.2939758300781	2	483.808377	965.6022	0.45472	0.00022	-0.22964	-0.0001111	0.22508	0.00010889	483.80816621255593	89.946	1.0621	87.371	87.149	88.212	-2.575					39	20	3	0	0	0	0.027462	1	7830	7830		38.806	13.356	1	133640			30792	956	25308	25334	34039	34039					0.11802343439467222
LKAHKAVIS	9	Unmodified	_LKAHKAVIS_					0	0	0		ENST00000554644.1_1_14:93723510-93760888:-|nuORF;nc|ENSG00000011114|Q9P203-3|BTBD7;ENSG00000011114|ENST00000334746|BTBD7	ENST00000554644.1_1_14:93723510-93760888:-|nuORF	ENST00000554644.1_1_14:93723510-93760888:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	483.808377	965.6022	-0.7004	-0.00033886	0.89993	0.00043539	0.19953	9.6534E-05	483.808670201388	89.525	1.017	87.444	87.192	88.209	-2.0805	0.038275	0.00092491	NaN	30.504	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155700			30793	956	25308	25334							0.11802343439467222
LKAIHHRVSW	10	Unmodified	_LKAIHHRVSW_					0	0	0		tr|A0A7D6VYX8|A0A7D6VYX8_9CLOTHADfamilyhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17615PE=4SV=1	tr|A0A7D6VYX8|A0A7D6VYX8_9CLOTHADfamilyhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17615PE=4SV=1	tr|A0A7D6VYX8|A0A7D6VYX8_9CLOTHADfamilyhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17615PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	416.2439880371094	3	416.243763	1245.70946	1.0605	0.00044145	-0.9715	-0.00040438	0.089046	3.7065E-05	416.24335289634735	72.461	2.2002	72.461	71.707	73.907	0					169	54	5	0	0	0	0.62712	1	6991	6991		38.754	0.94209	1	16175000			30794	35342	25309	25335	34040	34040					0.09643313373703677
LKAKRKVVKM	10	Unmodified	_LKAKRKVVKM_					0	0	0		ENSG00000169836|ENST00000304883|TACR3	ENSG00000169836|ENST00000304883|TACR3	ENSG00000169836|ENST00000304883|TACR3	MULTI-SECPEP	OvCa9_classI_Rep2	2	600.8501586914062	2	600.902285	1199.79002	-0.032049	-1.9258E-05	1.4125	0.00084875	1.3804	0.00082949	601.4031079884311	82.633	0.26109	81.034	80.854	81.115	-1.5988					6	4	2	0	0	0	0.026956	1	7060	7060		34.173	1.3601	1	7511.2			30795	7041	25310	25336	34041	34041					0.19811458372373636
LKAKVSKKF	9	Unmodified	_LKAKVSKKF_					0	0	0		tr|A0A553SRU8|A0A553SRU8_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_01875PE=4SV=1	tr|A0A553SRU8|A0A553SRU8_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_01875PE=4SV=1	tr|A0A553SRU8|A0A553SRU8_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_01875PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.8046875	2	524.847502	1047.68045	0.81601	0.00042828	-2.2475	-0.0011796	-1.4315	-0.00075129	524.8459127390353	91.956	0.2616	90.72	90.642	90.904	-1.2355					6	4	2	0	0	0	0.027433	1	8163	8163		74.255	36.444	1	7705.9			30796	34300	25311	25337	34042	34042					0.15851776024715036
LKAKYLEDV	9	Unmodified	_LKAKYLEDV_					0	0	0		nc|ENSG00000132635|Q9H1Q7-3|PCED1A;nc|ENSG00000132635|Q9H1Q7-2|PCED1A	nc|ENSG00000132635|Q9H1Q7-3|PCED1A	nc|ENSG00000132635|Q9H1Q7-3|PCED1A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.7608642578125	2	539.810782	1077.60701	-0.82113	-0.00044326	0.2095	0.00011309	-0.61163	-0.00033017	539.81088114557	102.3	2.3578	100.1	99.676	102.03	-2.1994					47	41	2	0	0	0	0.027462	1	9233	9233		21.96	0	1	139270			30797	15018	25312	25338	34043	34043					0.0713118279156788
LKALERKE	8	Unmodified	_LKALERKE_					0	0	0			REV__ENSG00000155087|ENST00000285402|ODF1	REV__ENSG00000155087|ENST00000285402|ODF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.7895812988281	2	493.803291	985.59203	-0.37885	-0.00018708	-1.1753	-0.00058038	-1.5542	-0.00076746	493.8023235883155	35.515	0.32162	35.515	35.339	35.661	0					14	6	3	0	0	0	0.028476	1	1805	1805		42.396	0	1	65718	+		30798	20412	25313	25339	34044	34044					0.09865735714242874
LKALGWRMA	9	Unmodified	_LKALGWRMA_					0	0	0			REV__nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	REV__nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	MSMS	OvCa9_classI_Rep4_	4	523.30615234375	2	523.302404	1044.59026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.11	1	138.61	138.11	139.11	-1.4952								0	0	0	0.18309	1	13667	13667		30.504	0	1		+		30799	23305	25314	25340	34045	34045					0.06974403424624143
LKALIRGHD	9	Unmodified	_LKALIRGHD_					0	0	0		ENST00000254940.9_1_16:69376739-69376844:+|nuORF	ENST00000254940.9_1_16:69376739-69376844:+|nuORF	ENST00000254940.9_1_16:69376739-69376844:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	511.80938720703125	2	511.808908	1021.60326	-1.8602	-0.00095206	1.7701	0.00090597	-0.090053	-4.609E-05	511.8096472275158	37.824	1.1833	35.115	34.83	36.013	-2.7097					51	23	4	0	0	0	0.55588	1	1732	1732		37.159	8.9048	1	203000			30800	9817	25315	25341	34046	34046					0.09332557808374986
LKAMCNHLEL	10	Oxidation (M)	_LKAM(Oxidation (M))CNHLEL_		LKAM(1)CNHLEL		LKAM(72)CNHLEL	0	0	1			REV__ENSG00000105393|ENST00000598188|BABAM1	REV__ENSG00000105393|ENST00000598188|BABAM1	MULTI-MSMS	OvCa9_classI_Rep4_	4	594.3031005859375	2	594.299201	1186.58385	0.16637	9.8874E-05	-1.5985	-0.00094997	-1.4321	-0.0008511	594.2982637247995	76.399	2.3505	73.46	73.033	75.383	-2.9389					154	48	6	0	0	0	0.37436	1	6119	6119		71.877	6.0743	1	7818100	+		30801	17720	25316	25342	34047	34047		412			-0.0019790258907050884
LKANLRKSP	9	Unmodified	_LKANLRKSP_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35057116-35062147:-|nuORF	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MSMS	OvCa9_classI_Rep2	2	513.8221435546875	2	513.824558	1025.63456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.21	1	64.549	64.049	65.049	-2.661								0	0	0	0.16648	1	5243	5243		60.972	2.19	1				30802	6545	25317	25343	34048	34048					0.12277130842471706
LKANVEKPVK	10	Unmodified	_LKANVEKPVK_					0	0	0		ENSG00000115806|ENST00000234160|GORASP2;nc|ENSG00000115806|Q9H8Y8-3|GORASP2;ENST00000442798.5_1_2:171793138-171822637:+|nuORF;nc|ENSG00000114745|Q9BQQ3-2|GORASP1;ENST00000441302.6_1_3:39142056-39149053:-|nuORF;ENSG00000114745|ENST00000319283|GORASP1;ENST00000470910.5_1_3:39142410-39149053:-|nuORF;ENST00000493851.5_1_3:39143979-39149053:-|nuORF	ENSG00000115806|ENST00000234160|GORASP2;ENST00000470910.5_1_3:39142410-39149053:-|nuORF;ENST00000493851.5_1_3:39143979-39149053:-|nuORF	ENSG00000115806|ENST00000234160|GORASP2	MULTI-MSMS	OvCa9_classI_Rep2	2	563.3523559570312	2	563.353148	1124.69174	-0.51442	-0.0002898	-0.73977	-0.00041675	-1.2542	-0.00070655	563.3531834496299	116.13	2.03	116.01	115.64	117.67	-0.11777					126	40	5	0	0	0	0.75313	1	11179	11179		24.519	0	1	2302900			30803	3127;12372;12743	25318	25344	34049	34049					0.13438553328182934
LKAQISPAR	9	Unmodified	_LKAQISPAR_					0	0	0			REV__ENST00000564857.1_1_15:75197493-75199009:-|nuORF	REV__ENST00000564857.1_1_15:75197493-75199009:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.80230712890625	2	492.303458	982.592364	0.60074	0.00029575	-0.72236	-0.00035562	-0.12161	-5.9871E-05	492.30265758228074	60.196	1.3844	56.766	56.21	57.594	-3.43					53	27	3	0	0	0	0.027462	1	4141	4141		35.152	7.2698	1	120780	+		30804	22076	25319	25345	34050	34050					0.10037155434076794
LKAQLWVY	8	Unmodified	_LKAQLWVY_					0	0	0		ENSG00000135414|ENST00000257868|GDF11	ENSG00000135414|ENST00000257868|GDF11	ENSG00000135414|ENST00000257868|GDF11	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.843994140625	2	510.797478	1019.5804	-1.1837	-0.00060464	2.099	0.0010722	0.91529	0.00046753	510.7991317753263	124.53	0.36496	123.13	123.02	123.39	-1.3908					9	6	2	0	0	0	0.028476	1	11814	11814		28.254	2.8041	1	16370			30805	4375	25320	25346	34051	34051					0.07139538690887548
LKARRTKEE	9	Unmodified	_LKARRTKEE_					0	0	0			REV__nc|ENSG00000147202|O60879-2|DIAPH2	REV__nc|ENSG00000147202|O60879-2|DIAPH2	MULTI-MSMS	OvCa99_classI_Rep5	1	565.8355102539062	2	565.835654	1129.65676	0.32553	0.0001842	-2.0963	-0.0011862	-1.7708	-0.001002	565.8347307645225	31.149	1.6226	31.149	30.93	32.553	0					113	32	6	0	0	0	0.35444	1	1247	1247		56.721	10.769	1	29421000	+		30806	20052	25321	25347	34052	34052					0.09711310520242478
LKASLSQII	9	Unmodified	_LKASLSQII_					0	0	0			REV__tr|A0A553SJJ8|A0A553SJJ8_NIACIDivalentmetalcationtransporterMntHOS=NialliacirculansOX=1397GN=mntHPE=3SV=1	REV__tr|A0A553SJJ8|A0A553SJJ8_NIACIDivalentmetalcationtransporterMntHOS=NialliacirculansOX=1397GN=mntHPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.80926513671875	2	486.808042	971.601532	-0.096422	-4.6939E-05	4.2465	0.0020672	4.1501	0.0020203	486.80997360124303	130.23	1.3225	129.12	128.88	130.21	-1.1121					55	26	3	0	0	0	0.61365	1	10357	10357		30.318	4.7437	1	142420	+		30807	30011	25322	25348	34053	34053					0.11459503999765275
LKAVEEAKL	9	Unmodified	_LKAVEEAKL_					0	0	0			REV__ENSG00000111145|ENST00000228741|ELK3	REV__ENSG00000111145|ENST00000228741|ELK3	MULTI-MSMS	OvCa99_classI_Rep5	1	501.3084716796875	2	500.8055	999.596446	-0.4488	-0.00022476	0.50743	0.00025412	0.058629	2.9362E-05	500.8054693151442	55.938	0.93824	55.938	55.559	56.498	0					45	22	3	0	0	0	0.3249	1	4634	4634		60.118	1.8883	1	2792000	+		30808	18019	25323	25349	34054	34054					0.09663200137140393
LKAYIHKAL	9	Unmodified	_LKAYIHKAL_					0	0	0			REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.31689453125	2	528.831852	1055.64915	-0.80141	-0.00042381	3.1865	0.0016851	2.3851	0.0012613	529.332803074531	66.253	0.58727	66.253	65.904	66.491	0					18	14	2	0	0	0	0.027462	1	6100	6100		16.473	3.514	1	624480	+		30809	22932	25324	25350	34055	34055					0.12355202990602265
LKCEPHKLA	9	Unmodified	_LKCEPHKLA_					0	0	0			REV__ENSG00000158077|ENST00000299481|NLRP14	REV__ENSG00000158077|ENST00000299481|NLRP14	MULTI-MSMS	OvCa9_classI_Rep3	3	519.79296875	2	519.791869	1037.56919	1.5307	0.00079564	2.0914	0.0010871	3.6221	0.0018827	519.7927708482009	121.53	4.9018	120.5	119.85	124.76	-1.0286					197	93	4	0	0	0	0.28934	1	9311	9311		64.207	2.0999	1	827300	+		30810	20546	25325	25351	34056	34056					0.05190393325119658
LKCFRTSIA	9	Unmodified	_LKCFRTSIA_					0	0	0		tr|A0A553SSR9|A0A553SSR9_NIACIGlycosylhydrolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_03495PE=3SV=1	tr|A0A553SSR9|A0A553SSR9_NIACIGlycosylhydrolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_03495PE=3SV=1	tr|A0A553SSR9|A0A553SSR9_NIACIGlycosylhydrolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_03495PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.79248046875	2	519.791869	1037.56919	-0.39548	-0.00020557	4.0333	0.0020965	3.6378	0.0018909	519.7938318646319	121.84	4.0005	120.49	119.9	123.9	-1.3479					152	78	4	0	0	0	0.33652	1	11569	11569		58.782	5.4305	1	769080			30811	34409	25326	25352	34057	34057					0.05190393325119658
LKCKESDSP	9	Unmodified	_LKCKESDSP_					0	0	0		nc|ENSG00000068912|Q96DZ1-2|ERLEC1;ENSG00000068912|ENST00000185150|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	MULTI-SECPEP	OvCa9_classI_Rep2	2	504.2795104980469	2	503.747324	1005.4801	-1.7277	-0.00087031	1.1583	0.00058349	-0.56937	-0.00028682	504.2493685115196	50.917	0.44612	48.123	47.926	48.372	-2.794					12	8	2	0	0	0	0.027453	1	3288	3288		45.972	3.5761	1	9508.7			30812	1401	25327	25353	34058	34058					-0.022424864250751853
LKCKNRYF	8	Unmodified	_LKCKNRYF_					0	0	0			REV__ENST00000479992.5_1_19:49990877-49993604:+|nuORF	REV__ENST00000479992.5_1_19:49990877-49993604:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.3087768554688	2	536.292037	1070.56952	-1.4677	-0.00078713	4.2952	0.0023035	2.8275	0.0015164	536.2942800405503	76.451	1.2012	74.597	74.202	75.403	-1.854					56	22	3	0	0	0	0.028476	1	6340	6340		38.806	7.2763	1	355630	+		30813	26448	25328	25354	34059	34059					0.03705813044939532
LKCKTTNLN	9	Unmodified	_LKCKTTNLN_					0	0	0		ENSG00000112299|ENST00000367928|VNN1	ENSG00000112299|ENST00000367928|VNN1	ENSG00000112299|ENST00000367928|VNN1	MULTI-MSMS	OvCa99_classI_Rep5	1	517.7863159179688	2	517.786784	1033.55902	-1.1004	-0.00056978	-1.0579	-0.00054778	-2.1583	-0.0011176	517.7859989718473	66.156	0.46854	66.156	65.984	66.452	0					20	11	2	0	0	0	0.42676	1	6116	6116		49.442	1.7842	1	2123700			30814	2895	25329	25355	34060	34060					0.043577855998591986
LKCQIRDEP	9	Unmodified	_LKCQIRDEP_					0	0	0			REV__nc|ENSG00000100987|Q9NZR4-7|VSX1	REV__nc|ENSG00000100987|Q9NZR4-7|VSX1	MULTI-SECPEP	OvCa9_classI_Rep3	3	552.2810668945312	2	551.289691	1100.56483	-0.071284	-3.9298E-05	0.34807	0.00019188	0.27678	0.00015259	551.2895399023755	110.39	1.0851	109.24	108.93	110.01	-1.1444					42	20	3	0	0	0	0.027462	1	8042	8042		42.864	6.4175	1	57559	+		30815	28769	25330	25356	34061	34061					0.018568841115438772
LKCQIRDEP	9	Unmodified	_LKCQIRDEP_					0	0	0			REV__nc|ENSG00000100987|Q9NZR4-7|VSX1	REV__nc|ENSG00000100987|Q9NZR4-7|VSX1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	551.289691	1100.56483	0.71984	0.00039684	-0.12862	-7.0907E-05	0.59122	0.00032593	551.289257641258	109.5	0.98977	109.33	109.02	110.01	-0.17236	0.059759	-0.0001677	NaN	65.465	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52492	+		30816	28769	25330	25356							0.018568841115438772
LKCQVLLSN	9	Unmodified	_LKCQVLLSN_					0	0	0		nc|ENSG00000153563|P01732-2|CD8A;ENSG00000153563|ENST00000283635|CD8A;nc|ENSG00000153563|P01732-3|CD8A	nc|ENSG00000153563|P01732-2|CD8A	nc|ENSG00000153563|P01732-2|CD8A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.30810546875	2	509.291702	1016.56885	0.4978	0.00025352	-3.2886	-0.0016749	-2.7908	-0.0014213	509.2900454008947	110.75	0.52566	109.15	108.91	109.44	-1.6011					14	9	2	0	0	0	0.027411	1	10216	10216		45.972	0	1	16557			30817	5685	25331	25357	34062	34062					0.061229736052496264
LKCWDVHCCP	10	Unmodified	_LKCWDVHCCP_					0	0	0			REV__ENST00000268704.6_1_16:89623796-89624147:+|nuORF	REV__ENST00000268704.6_1_16:89623796-89624147:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	402.22021484375	3	401.841773	1202.50349	1.2662	0.0005088	4.4317	0.0017809	5.6979	0.0022897	401.84284073329275	69.779	0.43762	66.298	66.201	66.639	-3.4812					11	8	2	0	0	0	0.026881	1	5237	5237		30.569	3.8192	1	9724.6	+		30818	24056	25332	25358	34063	34063					-0.08966087183762284
LKCWHPKAE	9	Unmodified	_LKCWHPKAE_					0	0	0		nc|ENSG00000105976|P08581-2|MET;ENSG00000105976|ENST00000397752|MET	nc|ENSG00000105976|P08581-2|MET	nc|ENSG00000105976|P08581-2|MET	MULTI-SECPEP	OvCa9_classI_Rep4_	4	556.3043212890625	2	556.289494	1110.56443	0.36843	0.00020495	1.5316	0.00085203	1.9001	0.001057	556.2901068782521	76.297	0.65858	73.358	73.033	73.691	-2.9389					18	13	2	0	0	0	0.027462	1	6014	6014		19.997	0	1	56374			30819	14943	25333	25359	34064	34064					0.01357509182321337
LKDLNLLPL	9	Unmodified	_LKDLNLLPL_					0	0	0			REV__tr|A0A553SST8|A0A553SST8_NIACISerine/threonineproteinkinaseOS=NialliacirculansOX=1397GN=CEQ21_03685PE=4SV=1	REV__tr|A0A553SST8|A0A553SST8_NIACISerine/threonineproteinkinaseOS=NialliacirculansOX=1397GN=CEQ21_03685PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	519.8331298828125	2	519.831517	1037.64848	1.8094	0.00094061	0.64283	0.00033416	2.4523	0.0012748	519.8316469291716	87.719	0.79213	87.719	87.463	88.255	0					46	18	3	0	0	0	0.053172	1	9296	9296		116.9	15.303	1	1375400	+		30820	30879	25334	25360	34065	34065					0.13116363550898313
LKDLPKRIP	9	Unmodified	_LKDLPKRIP_					0	0	0		nc|ENSG00000151239|Q12792-4|TWF1;ENSG00000151239|ENST00000395510|TWF1;nc|ENSG00000151239|Q12792-3|TWF1	nc|ENSG00000151239|Q12792-4|TWF1	nc|ENSG00000151239|Q12792-4|TWF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.8123168945312	2	540.350409	1078.68626	-0.097984	-5.2946E-05	-0.22928	-0.00012389	-0.32727	-0.00017684	540.3500866722349	56.463	3.0082	56.463	55.804	58.812	0					99	71	3	0	0	0	0.027462	1	4985	4985		35.618	2.8059	1	367580			30821	5544	25335	25361	34066	34066					0.15006874536379655
LKDLSKPNT	9	Unmodified	_LKDLSKPNT_					0	0	0			REV__ENSG00000181541|ENST00000317605|MAB21L2	REV__ENSG00000181541|ENST00000317605|MAB21L2	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.29437255859375	2	508.292756	1014.57096	0.075787	3.8522E-05	0.90398	0.00045949	0.97976	0.00049801	508.29328790385733	38.324	1.4878	35.397	35.007	36.495	-2.9264					57	29	3	0	0	0	0.34132	1	1492	1492		58.23	3.4536	1	183680	+		30822	22238	25336	25362	34067	34067					0.06425725614712974
LKDQLLFR	8	Unmodified	_LKDQLLFR_					0	0	0		ENST00000434972.1_1_X:5223988-5224234:-|nuORF	ENST00000434972.1_1_X:5223988-5224234:-|nuORF	ENST00000434972.1_1_X:5223988-5224234:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.8026123046875	2	516.813659	1031.61277	0.29987	0.00015498	-0.78738	-0.00040693	-0.48751	-0.00025195	516.8130777535694	108.15	1.0881	107.92	107.63	108.72	-0.22498					44	21	3	0	0	0	0.028476	1	10159	10159		37.159	0	1	139240			30823	11853	25337	25363	34068	34068					0.09822326093922129
LKDRHDFRI	9	Unmodified	_LKDRHDFRI_					0	0	0		ENSG00000186803|ENST00000357374|IFNA10	ENSG00000186803|ENST00000357374|IFNA10	ENSG00000186803|ENST00000357374|IFNA10	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.2117614746094	3	400.55964	1198.65709	1.5209	0.00060921	-4.0957	-0.0016406	-2.5748	-0.0010314	400.55790966713414	32.429	0.29871	32.429	32.254	32.553	0					10	5	2	0	0	0	0.027462	1	1408	1408		46.457	3.5925	1	68125			30824	8362	25338	25364	34069	34069					0.06570730240082412
LKDRSRRK	8	Unmodified	_LKDRSRRK_					0	0	0		ENSG00000139209|ENST00000266579|SLC38A4	ENSG00000139209|ENST00000266579|SLC38A4	ENSG00000139209|ENST00000266579|SLC38A4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.8084716796875	2	529.830706	1057.64686	-1.3798	-0.00073107	-2.3316	-0.0012354	-3.7115	-0.0019664	529.8293415637631	121.21	0.26046	119.87	119.74	120	-1.3479					6	4	2	0	0	0	0.028476	1	11414	11414		30.504	1.3541	1	11489			30825	4756	25339	25365	34070	34070					0.12034167305523624
LKDRYARWEQL	11	Unmodified	_LKDRYARWEQL_					0	0	0			REV__ENSG00000111670|ENST00000299314|GNPTAB	REV__ENSG00000111670|ENST00000299314|GNPTAB	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.8029479980469	3	493.268525	1476.78375	-0.75501	-0.00037242	-1.3294	-0.00065575	-2.0844	-0.0010282	493.2679902274357	51.538	0.29658	48.725	48.502	48.799	-2.8129					9	5	2	0	0	0	0.026024	1	3389	3389		10.562	0	1	11793	+		30826	18045	25340	25366	34071	34071					0.06442611674583532
LKDSKLALE	9	Unmodified	_LKDSKLALE_					0	0	0		tr|A0A7D7A343|A0A7D7A343_9CLOTPolysaccharidedeacetylasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20520PE=3SV=1	tr|A0A7D7A343|A0A7D7A343_9CLOTPolysaccharidedeacetylasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20520PE=3SV=1	tr|A0A7D7A343|A0A7D7A343_9CLOTPolysaccharidedeacetylasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20520PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	508.8041076660156	2	508.802957	1015.59136	-0.75072	-0.00038197	0.097557	4.9637E-05	-0.65316	-0.00033233	508.8029903488253	59.983	1.0415	57.213	56.725	57.766	-2.7702					57	19	4	0	0	0	0.22621	1	4435	4435		71.877	2.2498	1	507220			30827	36103	25341	25367	34072	34072					0.08418896274508825
LKDSLNHLN	9	Unmodified	_LKDSLNHLN_					0	0	0		ENSG00000185669|ENST00000332281|SNAI3	ENSG00000185669|ENST00000332281|SNAI3	ENSG00000185669|ENST00000332281|SNAI3	MULTI-MSMS	OvCa99_classI_Rep5	1	527.2883911132812	2	527.288005	1052.56146	-0.45784	-0.00024141	0.54412	0.00028691	0.086273	4.5491E-05	527.288196839023	73.134	0.9147	73.134	72.877	73.792	0					47	22	3	0	0	0	0.35444	1	7188	7188		56.721	3.6321	1	3754500			30828	8274	25342	25368	34073	34073					0.03727957329192577
LKDYKELERET	11	Unmodified	_LKDYKELERET_					0	0	0			REV__tr|A0A553SGU4|A0A553SGU4_NIACIHolo-[acyl-carrier-protein]synthaseOS=NialliacirculansOX=1397GN=acpSPE=3SV=1	REV__tr|A0A553SGU4|A0A553SGU4_NIACIHolo-[acyl-carrier-protein]synthaseOS=NialliacirculansOX=1397GN=acpSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	474.7725830078125	3	475.252429	1422.73546	1.4244	0.00067694	-1.4937	-0.00070988	-0.069315	-3.2942E-05	475.58684412468193	37.269	0.34951	34.376	34.242	34.591	-2.8925					8	6	2	0	0	0	0.026058	1	1369	1369		30.139	7.5776	1	12183	+		30829	29737	25343	25369	34074	34074					0.04100073243967017
LKEASLKQLP	10	Unmodified	_LKEASLKQLP_					0	0	0			REV__nc|ENSG00000138802|O95487-2|SEC24B	REV__nc|ENSG00000138802|O95487-2|SEC24B	MULTI-SECPEP	OvCa9_classI_Rep3	3	564.810791015625	2	563.845156	1125.67576	-0.34012	-0.00019177	0.1348	7.6006E-05	-0.20532	-0.00011577	563.8450953942748	108.96	1.5503	107.76	107.11	108.66	-1.1978					46	29	3	0	0	0	0.02663	1	7802	7802		60.118	14.146	1	93791	+		30830	19577	25344	25370	34075	34075					0.11794847091277916
LKEDELLLK	9	Unmodified	_LKEDELLLK_					0	0	0			REV__tr|A0A553SKH8|A0A553SKH8_NIACIM3familyoligoendopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_18815PE=3SV=1	REV__tr|A0A553SKH8|A0A553SKH8_NIACIM3familyoligoendopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_18815PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	550.3507690429688	2	550.831714	1099.64888	0.37794	0.00020818	-2.0024	-0.001103	-1.6244	-0.00089479	550.8304247815773	31.936	0.69317	29.226	28.986	29.679	-2.7097					25	13	2	0	0	0	0.027462	1	1012	1012		37.812	15.852	1	41184	+		30831	30129	25345	25371	34076	34076					0.10303738480092761
LKEDKSKSI	9	Unmodified	_LKEDKSKSI_					0	0	0			REV__nc|ENSG00000112655|Q13308-3|PTK7	REV__nc|ENSG00000112655|Q13308-3|PTK7	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.82861328125	2	524.305864	1046.59717	0.13087	6.8616E-05	0.40141	0.00021046	0.53228	0.00027908	524.8081179646115	161.5	0.25168	161.5	161.36	161.61	0					6	4	2	0	0	0	0.027462	1	18930	18930		24.519	4.5224	1	7869.6	+		30832	16081	25346	25372	34077	34077					0.07573994786184812
LKEEASPVPL	10	Unmodified	_LKEEASPVPL_					0	0	0		nc|ENSG00000275066|Q9UMZ2-6|SYNRG;nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG	nc|ENSG00000275066|Q9UMZ2-6|SYNRG	nc|ENSG00000275066|Q9UMZ2-6|SYNRG	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.2862548828125	2	541.808239	1081.60193	2.0357	0.0011029	0.9357	0.00050697	2.9714	0.0016099	541.8084504153825	77.442	0.54541	77.442	77.168	77.714	0					29	12	4	0	0	0	0.02676	1	7829	7829		49.536	19.032	1	831370			30833	9567	25347	25373	34078	34078					0.06438878928952363
LKEEECKEP	9	Unmodified	_LKEEECKEP_					0	0	0		ENSG00000101577|ENST00000677752|LPIN2;LPIN2|p.S638Lfs*12|1|0.09|ENSG00000101577|chr18:2925250-2925250|A/-|frameshift_variant;LPIN2|p.R280Qfs*4|1|0.14|ENSG00000101577|chr18:2938021-2938022|-/ACCT|frameshift_variant	ENSG00000101577|ENST00000677752|LPIN2	ENSG00000101577|ENST00000677752|LPIN2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.3250732421875	2	552.765714	1103.51688	-1.1957	-0.00066094	-0.9916	-0.00054812	-2.1873	-0.0012091	552.7654650784458	106.86	0.73727	104.99	104.7	105.43	-1.8785					17	13	2	0	0	0	0.027418	1	9708	9708		62.107	8.756	1	21735			30834	2188	25348	25374	34079	34079					-0.030742345991711773
LKEEILKLN	9	Unmodified	_LKEEILKLN_					0	0	0			REV__ENSG00000101596|ENST00000320876|SMCHD1	REV__ENSG00000101596|ENST00000320876|SMCHD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7772827148438	2	550.339707	1098.66486	1.3293	0.00073157	0.28609	0.00015745	1.6154	0.00088902	550.3395820171374	81.757	0.56822	81.757	81.493	82.061	0					29	13	3	0	0	0	0.02744	1	8456	8456		52.937	1.744	1	1183100	+		30835	17507	25349	25375	34080	34080					0.11947444717020517
LKEEIVTPK	9	Unmodified	_LKEEIVTPK_					0	0	0		nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;CDK12|p.E928Gfs*27|1|0.54|ENSG00000167258|chr17:39515740-39515741|-/G|frameshift_variant;nc|ENSG00000167258|Q9NYV4-3|CDK12;CDK12|p.S785Kfs*4|1|0.92|ENSG00000167258|chr17:39494626-39494627|-/A|frameshift_variant	nc|ENSG00000167258|Q9NYV4-2|CDK12	nc|ENSG00000167258|Q9NYV4-2|CDK12	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.8099365234375	2	528.818607	1055.62266	1.1409	0.00060331	-3.3114	-0.0017512	-2.1706	-0.0011478	528.8166006772927	144.45	0.58365	144.45	144.16	144.74	0					25	11	4	0	0	0	0.027462	1	16857	16857		21.96	0	1	465510			30836	6776	25350	25376	34081	34081					0.09707469308614236
LKEELVAAV	9	Unmodified	_LKEELVAAV_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-3|CTNNA2;ENST00000508970.1_1_2:79924974-80004158:+|nuORF;CTNNA1-KDM3B|1|fusion	ENSG00000044115|ENST00000302763|CTNNA1;CTNNA1-KDM3B|1|fusion	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.25714111328125	2	486.292225	970.569897	-2.7092	-0.0013174	0.96685	0.00047017	-1.7423	-0.00084727	486.29251979402454	104.14	0.51302	104.14	103.85	104.36	0					20	11	2	0	0	0	0.027418	1	11654	11654		49.442	1.5259	1	206210			30837	1131;693	25351	25377	34082	34082					0.08343511245811897
LKEESVKL	8	Unmodified	_LKEESVKL_					0	0	0		nc|ENSG00000198513|Q8WXF7-2|ATL1;ENSG00000198513|ENST00000358385|ATL1	nc|ENSG00000198513|Q8WXF7-2|ATL1	nc|ENSG00000198513|Q8WXF7-2|ATL1	MULTI-MSMS	OvCa9_classI_Rep3	3	473.2840576171875	2	473.2844	944.554247	-0.43716	-0.0002069	0.27678	0.00013099	-0.16038	-7.5905E-05	473.28438617111897	136.5	1.2154	135.4	135.15	136.36	-1.1076					38	24	3	0	0	0	0.59148	1	11082	11082		65.803	10.299	1	56592			30838	8822	25352	25378	34083	34083					0.079752247287729
LKEFKYYT	8	Unmodified	_LKEFKYYT_					0	0	0			REV__ENSG00000249853|ENST00000312719|HS3ST5	REV__ENSG00000249853|ENST00000312719|HS3ST5	MULTI-SECPEP	OvCa9_classI_Rep2	2	545.316162109375	2	546.292225	1090.5699	-1.5634	-0.00085408	4.1558	0.0022703	2.5924	0.0014162	546.2943369044838	141.94	0.93744	141.71	141.47	142.41	-0.22696					28	18	2	0	0	0	0.028476	1	14291	14291		27.882	17.617	1	21396	+		30839	23491	25353	25379	34084	34084					0.02823511245787813
LKEFLTKII	9	Unmodified	_LKEFLTKII_					0	0	0			REV__ENSG00000144554|ENST00000675286|FANCD2	REV__ENSG00000144554|ENST00000675286|FANCD2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.3250732421875	2	552.854993	1103.69543	-0.10248	-5.6659E-05	-0.56203	-0.00031072	-0.66452	-0.00036738	552.8546097952044	105.4	1.5601	103.38	103.05	104.61	-2.0161					76	30	4	0	0	0	0.027411	1	9708	9708		67.494	14.557	1	231230	+		30840	19918	25354	25380	34085	34085					0.14773223102019983
LKEFTDLIK	9	Unmodified	_LKEFTDLIK_					0	0	0			REV__ITGAL|p.Q447Rfs*31|1|0.29|ENSG00000005844|chr16:30494336-30494342|CCAGGTC/-|frameshift_variant	REV__ITGAL|p.Q447Rfs*31|1|0.29|ENSG00000005844|chr16:30494336-30494342|CCAGGTC/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.8062744140625	2	553.826432	1105.63831	-1.3531	-0.00074938	1.1376	0.00063002	-0.21552	-0.00011936	553.8271881968504	119.22	1.0378	117.87	117.52	118.56	-1.3444					37	19	3	0	0	0	0.027447	1	11250	11250		56.721	3.7844	1	54618	+		30841	16404	25355	25381	34086	34086					0.08971755825655237
LKEGKDYKDS	10	Unmodified	_LKEGKDYKDS_					0	0	0		tr|A0A553SH20|A0A553SH20_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_11995PE=4SV=1	tr|A0A553SH20|A0A553SH20_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_11995PE=4SV=1	tr|A0A553SH20|A0A553SH20_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_11995PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	592.3236083984375	2	591.803685	1181.59282	-0.72756	-0.00043057	-4.4351	-0.0026247	-5.1627	-0.0030553	591.8010738747648	50.184	0.56526	50.184	49.944	50.509	0					27	12	3	0	0	0	0.026968	1	3763	3763		22.58	1.6327	1	484870			30842	33224	25356	25382	34087	34087					0.009284855726036767
LKEGTHIKE	9	Unmodified	_LKEGTHIKE_					0	0	0			REV__ENST00000441055.1_1_X:66594168-66594795:+|nuORF	REV__ENST00000441055.1_1_X:66594168-66594795:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.3175048828125	2	527.798206	1053.58186	-0.87799	-0.0004634	-3.8454	-0.0020296	-4.7234	-0.002493	528.2992588055304	102.88	0.36758	100.68	100.41	100.78	-2.1994					9	6	2	0	0	0	0.027446	1	9267	9267		51.193	17.02	1	12580	+		30843	25837	25357	25383	34088	34088					0.05721127988999797
LKEIPGKVSE	10	Unmodified	_LKEIPGKVSE_					0	0	0		tr|A0A553SMY1|A0A553SMY1_NIACIPepSYdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23410PE=4SV=1	tr|A0A553SMY1|A0A553SMY1_NIACIPepSYdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23410PE=4SV=1	tr|A0A553SMY1|A0A553SMY1_NIACIPepSYdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23410PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7979736328125	2	550.321514	1098.62847	2.0017	0.0011016	0.12449	6.8512E-05	2.1262	0.0011701	550.3214704795357	84.964	0.453	84.964	84.716	85.169	0					19	10	3	0	0	0	0.026942	1	8862	8862		40.058	14.484	1	529290			30844	33883	25358	25384	34089	34089					0.08310567820285542
LKEIRNIL	8	Unmodified	_LKEIRNIL_					0	0	0		nc|ENSG00000101977|P10911-6|MCF2;nc|ENSG00000101977|P10911-2|MCF2;nc|ENSG00000101977|P10911|MCF2;nc|ENSG00000101977|P10911-4|MCF2;nc|ENSG00000101977|P10911-3|MCF2;ENSG00000101977|ENST00000519895|MCF2	nc|ENSG00000101977|P10911-6|MCF2	nc|ENSG00000101977|P10911-6|MCF2	MULTI-MSMS	OvCa99_classI_Rep5	1	499.8223876953125	2	499.821484	997.628415	1.383	0.00069124	0.81656	0.00040813	2.1995	0.0010994	499.82190914888116	109.91	0.67438	109.91	109.55	110.22	0					58	14	5	0	0	0	0.62474	1	12487	12487		58.782	0	1	1166100			30845	2212	25359	25385	34090	34090					0.1295061261095043
LKEITEAQKEC	11	Unmodified	_LKEITEAQKEC_					0	0	0			REV__ENSG00000198839|ENST00000361822|ZNF277	REV__ENSG00000198839|ENST00000361822|ZNF277	MULTI-SECPEP	OvCa99_classI_Rep5	1	431.8641662597656	3	431.223594	1290.64895	-0.060296	-2.6001E-05	2.5607	0.0011042	2.5004	0.0010782	431.5589810385397	40.754	0.35011	40.754	40.619	40.969	0					9	7	2	0	0	0	0.025861	1	2509	2509		15.921	0	1	31196	+		30846	23075	25360	25386	34091	34091					0.015253704177666805
LKEKAVPIPEA	11	Unmodified	_LKEKAVPIPEA_					0	0	0		ENSG00000081248|ENST00000362061|CACNA1S;CACNA1S|p.L937Sfs*27|1|0.58|ENSG00000081248|chr1:201065882-201065882|G/-|frameshift_variant	ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8552856445312	2	597.858264	1193.70197	-2.7036	-0.0016164	-0.53743	-0.00032131	-3.241	-0.0019377	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.71498	1	12396	12396		24.519	0.99649	1	591030			30847	1658	25361	25387	34092	34092					0.11287116262769814
LKEKDISLT	9	Unmodified	_LKEKDISLT_					0	0	0		ENSG00000121101|ENST00000349033|TEX14;nc|ENSG00000121101|Q8IWB6-2|TEX14;nc|ENSG00000121101|Q8IWB6|TEX14	ENSG00000121101|ENST00000349033|TEX14	ENSG00000121101|ENST00000349033|TEX14	MULTI-SECPEP	OvCa9_classI_Rep3	3	522.8247680664062	2	523.808239	1045.60193	-0.8169	-0.0004279	1.3094	0.00068587	0.49248	0.00025797	523.8089617977787	81.722	1.6278	79.399	78.131	79.759	-2.3226					54	31	2	0	0	0	0.027343	1	4538	4538		68.787	0	1	212190			30848	3471	25362	25388	34093	34093					0.08094878928932303
LKEKMKVM	8	Unmodified	_LKEKMKVM_					0	0	0		nc|ENSG00000164053|Q8WXE1-3|ATRIP;ENSG00000164053|ENST00000320211|ATRIP;ATRIP|p.H418Sfs*51|1|0.4|ENSG00000164053|chr3:48460305-48460306|-/AGCTTCCTGGAAGCAAATTCCTTTCTGGCCCTGGC|frameshift_variant;nc|ENSG00000164053|Q8WXE1-2|ATRIP	nc|ENSG00000164053|Q8WXE1-3|ATRIP	nc|ENSG00000164053|Q8WXE1-3|ATRIP	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.7502746582031	2	503.793023	1005.57149	-0.76709	-0.00038645	0.6034	0.00030399	-0.16369	-8.2465E-05	503.79285943636876	49.5	0.30594	49.5	49.373	49.679	0					9	6	2	0	0	0	0.028476	1	3691	3691		24.203	0	1	67804			30849	6397	25363	25389	34094	34094					0.0689310573856119
LKEKTKAEL	9	Unmodified	_LKEKTKAEL_					0	0	0		ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MULTI-MSMS	OvCa99_classI_Rep5	1	530.3228759765625	2	530.324057	1058.63356	2.9855	0.0015833	1.1446	0.00060699	4.1301	0.0021903	530.3246424151924	89.886	0.33913	89.886	89.681	90.02	0					17	7	3	0	0	0	0.064985	2	9618	9614;9618		110.12	0	1	494520			30850	4421	25364	25390	34095;34096	34096					0.10658871682880999
LKELKKLVPSS	11	Unmodified	_LKELKKLVPSS_					0	0	0			REV__MYO9A|p.N1484S|1|0.04|ENSG00000066933|chr15:71898052-71898052|T/C|missense_variant	REV__MYO9A|p.N1484S|1|0.04|ENSG00000066933|chr15:71898052-71898052|T/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	621.3959350585938	2	621.395013	1240.77547	-5.8783	-0.0036528	3.5154	0.0021845	-2.3629	-0.0014683	621.3971766735674	163.98	0.24121	162.59	162.42	162.66	-1.3925					14	4	4	0	0	0	0.70761	1	14315	14315		27.047	2.5281	1	1563100	+		30851	28692	25365	25391	34097	34097					0.16471664705250078
LKELLAEWQL	10	Unmodified	_LKELLAEWQL_					0	0	0		nc|ENSG00000141524|Q7Z403-4|TMC6;nc|ENSG00000141524|Q7Z403-3|TMC6;ENST00000588087.5_1_17:76116732-76122925:-|nuORF;ENSG00000141524|ENST00000590602|TMC6	nc|ENSG00000141524|Q7Z403-4|TMC6	nc|ENSG00000141524|Q7Z403-4|TMC6	MULTI-MSMS	OvCa9_classI_Rep2	2	621.85595703125	2	621.858264	1241.70197	-0.53094	-0.00033017	-3.0985	-0.0019268	-3.6295	-0.002257	621.8562878187912	70.339	1.2237	67.768	67.412	68.635	-2.5707					81	23	5	0	0	0	0.19294	1	5626	5626		83.647	21.956	1	789100			30852	4922	25366	25392	34098	34098					0.09079116262751086
LKELLAEWQL	10	Unmodified	_LKELLAEWQL_					0	0	0		nc|ENSG00000141524|Q7Z403-4|TMC6;nc|ENSG00000141524|Q7Z403-3|TMC6;ENST00000588087.5_1_17:76116732-76122925:-|nuORF;ENSG00000141524|ENST00000590602|TMC6	nc|ENSG00000141524|Q7Z403-4|TMC6	nc|ENSG00000141524|Q7Z403-4|TMC6	MULTI-MSMS	OvCa9_classI_Rep4_	4	621.8579711914062	2	621.858264	1241.70197	-0.94778	-0.00058939	-2.7724	-0.001724	-3.7202	-0.0023134	621.856419514009	71.406	1.2717	67.95	67.677	68.949	-3.4563					72	25	4	0	0	0	0.14369	1	5444	5444		112.11	13.525	1	1126400			30853	4922	25366	25392	34099	34099					0.09079116262751086
LKELLEKHL	9	Unmodified	_LKELLEKHL_					0	0	0			REV__nc|ENSG00000174840|Q6L8Q7-2|PDE12	REV__nc|ENSG00000174840|Q6L8Q7-2|PDE12	MULTI-MSMS	OvCa9_classI_Rep3	3	561.8458251953125	2	561.847699	1121.68084	-5.3491	-0.0030054	1.7307	0.0009724	-3.6184	-0.002033	561.8485776281088	152.58	1.5019	151.61	151.19	152.7	-0.97299					81	30	4	0	0	0	0.40667	1	13023	13023		51.335	14.176	1	218830	+		30854	21855	25367	25393	34100	34100					0.12487150953893433
LKELLGSTGE	10	Unmodified	_LKELLGSTGE_					0	0	0		tr|A0A553SUC6|A0A553SUC6_NIACIAcetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_06745PE=3SV=1;tr|A0A553SSC2|A0A553SSC2_NIACIAcetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_02635PE=3SV=1	tr|A0A553SUC6|A0A553SUC6_NIACIAcetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_06745PE=3SV=1	tr|A0A553SUC6|A0A553SUC6_NIACIAcetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_06745PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.7959594726562	2	523.790047	1045.56554	-0.20536	-0.00010756	1.7405	0.00091163	1.5351	0.00080407	523.7908331903445	62.926	0.63657	62.926	62.621	63.257	0					43	15	4	0	0	0	0.026915	1	5681	5681		27.882	0	1	5998400			30855	34359	25368	25394	34101	34101					0.0445800203226554
LKELQENQIK	10	Unmodified	_LKELQENQIK_					0	0	0			REV__ENSG00000047410|ENST00000367478|TPR	REV__ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	OvCa9_classI_Rep2	2	621.8558349609375	2	621.856252	1241.69795	-0.53094	-0.00033017	0.13593	8.4529E-05	-0.39501	-0.00024564	621.8562878187912	70.339	1.2237	67.768	67.412	68.635	-2.5707					81	23	5	0	0	0	0.35808	1	5632	5632		70.816	0	1	789100	+		30856	16656	25369	25395	34102	34102					0.08677026769032636
LKELQFVTP	9	Unmodified	_LKELQFVTP_					0	0	0		nc|ENSG00000151718|Q6AWC2-6|WWC2;nc|ENSG00000151718|Q6AWC2-5|WWC2;nc|ENSG00000151718|Q6AWC2-2|WWC2;nc|ENSG00000151718|Q6AWC2-4|WWC2;ENSG00000151718|ENST00000403733|WWC2;nc|ENSG00000151718|Q6AWC2-3|WWC2	nc|ENSG00000151718|Q6AWC2-6|WWC2	nc|ENSG00000151718|Q6AWC2-6|WWC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.7694091796875	2	537.813325	1073.6121	-0.63018	-0.00033892	-3.4252	-0.0018421	-4.0553	-0.002181	537.8112422902703	36.187	0.50315	36.187	36.029	36.532	0					25	10	3	0	0	0	0.027462	1	1906	1906		27.882	0	1	247250			30857	15094	25370	25396	34103	34103					0.07823486654183398
LKELQSMLQ	9	Unmodified	_LKELQSMLQ_					0	0	0		ENST00000416599.5_1_13:52760947-52763816:-|nuORF	ENST00000416599.5_1_13:52760947-52763816:-|nuORF	ENST00000416599.5_1_13:52760947-52763816:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.3193969726562	2	545.302267	1088.58998	-0.92262	-0.00050311	-1.8204	-0.00099265	-2.743	-0.0014958	545.3016106119883	63.193	0.38607	59.718	59.386	59.772	-3.475					9	7	2	0	0	0	0.027462	1	4406	4406		45.972	15.469	1	13612			30858	11607	25371	25397	34104	34104					0.049229389141146385
LKELQSMLQ	9	Unmodified	_LKELQSMLQ_					0	0	0		ENST00000416599.5_1_13:52760947-52763816:-|nuORF	ENST00000416599.5_1_13:52760947-52763816:-|nuORF	ENST00000416599.5_1_13:52760947-52763816:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	545.302267	1088.58998	-0.50378	-0.00027471	-4.9993	-0.0027262	-5.5031	-0.0030009	545.2996762029373	60.001	0.35027	60.001	59.766	60.116	0	0.14124	-0.0014059	NaN	54.776	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181130			30859	11607	25371	25397							0.049229389141146385
LKELRELPE	9	Unmodified	_LKELRELPE_					0	0	0			REV__ENSG00000149257|ENST00000358171|SERPINH1	REV__ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	OvCa99_classI_Rep5	1	563.8289184570312	2	563.826963	1125.63937	-0.043216	-2.4366E-05	-0.34727	-0.0001958	-0.39048	-0.00022016	563.8266748103352	68.415	1.0309	68.415	68.114	69.145	0					71	24	5	0	0	0	0.16562	1	6481	6481		82.241	4.9229	1	11055000	+		30860	20152	25372	25398	34105	34105					0.08157970194565678
LKELVFYY	8	Unmodified	_LKELVFYY_					0	0	0		CON__ENSEMBL:ENSBTAP00000024146	CON__ENSEMBL:ENSBTAP00000024146	CON__ENSEMBL:ENSBTAP00000024146	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.7826538085938	2	537.797143	1073.57973	-0.39581	-0.00021286	-1.6586	-0.00089201	-2.0544	-0.0011049	537.7955421510692	48.089	0.21996	48.089	47.984	48.204	0					7	4	3	0	0	0	0.028476	1	3496	3496		13.775	0	1	157090		+	30861	606	25373	25399	34106	34106					0.045886992511896096
LKEMMINYPD	10	Unmodified	_LKEMMINYPD_					0	0	0		tr|A0A553SGX9|A0A553SGX9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_11740PE=4SV=1	tr|A0A553SGX9|A0A553SGX9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_11740PE=4SV=1	tr|A0A553SGX9|A0A553SGX9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_11740PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	418.5634460449219	3	418.535003	1252.58318	-0.43347	-0.00018142	-1.7828	-0.00074617	-2.2163	-0.00092759	418.5342871703838	37.136	0.5999	37.136	36.885	37.485	0					19	11	3	0	0	0	0.026916	1	2040	2040		29.551	0	1	79853			30862	33206	25374	25400	34107	34107					-0.03300742028773129
LKEMNSLEI	9	Oxidation (M)	_LKEM(Oxidation (M))NSLEI_		LKEM(1)NSLEI		LKEM(90)NSLEI	0	0	1		tr|A0A553STF7|A0A553STF7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04790PE=4SV=1	tr|A0A553STF7|A0A553STF7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04790PE=4SV=1	tr|A0A553STF7|A0A553STF7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04790PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	546.781005859375	2	546.783907	1091.55326	-0.38383	-0.00020987	-2.8235	-0.0015438	-3.2073	-0.0017537	546.7822736350716	121.95	3.3566	121.74	121.33	124.69	-0.21033					164	67	4	0	0	0	0.12515	1	11880	11880		90.37	8.1293	1	467550			30863	34483	25375	25401	34108	34108		761			0.01114642297534374
LKERLLLYH	9	Unmodified	_LKERLLLYH_					0	0	0			REV__nc|ENSG00000130294|Q12756|KIF1A	REV__nc|ENSG00000130294|Q12756|KIF1A	MULTI-SECPEP	OvCa99_classI_Rep5	1	592.3236083984375	2	592.861141	1183.70773	-0.73904	-0.00043815	-2.9513	-0.0017497	-3.6903	-0.0021878	592.8592729051878	50.032	0.51917	50.032	49.813	50.332	0					24	11	3	0	0	0	0.027462	1	3763	3763		27.882	2.3082	1	365910	+		30864	18936	25376	25402	34109	34109					0.12322259565098648
LKERLTKI	8	Unmodified	_LKERLTKI_					0	0	0		ENSG00000154359|ENST00000398246|LONRF1;nc|ENSG00000154359|Q17RB8-2|LONRF1	ENSG00000154359|ENST00000398246|LONRF1	ENSG00000154359|ENST00000398246|LONRF1	MULTI-MSMS	OvCa9_classI_Rep3	3	500.82818603515625	2	500.829309	999.644065	-0.61458	-0.0003078	0.10073	5.0448E-05	-0.51385	-0.00025735	500.8293183218035	74.084	1.9767	71.596	71.324	73.301	-2.4873					112	39	4	0	0	0	0.28739	1	3654	3654		109.48	4.7318	1	1488900			30865	5732	25377	25403	34110	34110					0.14422899127964683
LKERLTKI	8	Unmodified	_LKERLTKI_					0	0	0		ENSG00000154359|ENST00000398246|LONRF1;nc|ENSG00000154359|Q17RB8-2|LONRF1	ENSG00000154359|ENST00000398246|LONRF1	ENSG00000154359|ENST00000398246|LONRF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.8300476074219	2	500.829309	999.644065	-0.35035	-0.00017547	-0.45612	-0.00022844	-0.80647	-0.0004039	500.8289582081238	75.17	1.489	71.939	71.678	73.167	-3.2308					75	30	4	0	0	0	0.25383	1	5924	5924		115.49	16.119	1	1140900			30866	5732	25377	25403	34111	34111					0.14422899127964683
LKESKELQI	9	Unmodified	_LKESKELQI_					0	0	0		nc|ENSG00000160551|Q7L7X3-3|TAOK1	nc|ENSG00000160551|Q7L7X3-3|TAOK1	nc|ENSG00000160551|Q7L7X3-3|TAOK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.3377075195312	2	544.321514	1086.62847	-0.80541	-0.0004384	1.6381	0.00089163	0.83266	0.00045323	544.3222939193472	64.408	1.0615	64.408	63.773	64.834	0					22	14	2	0	0	0	0.027418	1	5839	5839		82.241	0	1	472690			30867	15129	25378	25404	34112	34112					0.08862567820278855
LKETLLIH	8	Unmodified	_LKETLLIH_					0	0	0			REV__tr|A0A553SMR7|A0A553SMR7_NIACIAlanine--glyoxylateaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_23095PE=4SV=1	REV__tr|A0A553SMR7|A0A553SMR7_NIACIAlanine--glyoxylateaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_23095PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.7905578613281	2	483.80276	965.590967	-0.41331	-0.00019996	2.4378	0.0011794	2.0245	0.00097945	483.80390496543185	41.36	0.79325	41.36	41.104	41.897	0					25	17	2	0	0	0	0.028476	1	2647	2647		40.573	0	1	206780	+		30868	30364	25379	25405	34113	34113					0.10679521345332432
LKETPYTL	8	Unmodified	_LKETPYTL_					0	0	0		NEK3|p.D413Y|1|0.84|ENSG00000136098|chr13:52135801-52135801|C/A|missense_variant	NEK3|p.D413Y|1|0.84|ENSG00000136098|chr13:52135801-52135801|C/A|missense_variant	NEK3|p.D413Y|1|0.84|ENSG00000136098|chr13:52135801-52135801|C/A|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	482.7718505859375	2	482.771126	963.527698	0.79266	0.00038268	1.3957	0.00067382	2.1884	0.0010565	482.77151457307235	158.9	0.48624	158.9	158.65	159.14	0					27	9	4	0	0	0	0.72896	1	18630	18630		37.159	3.6435	1	107630			30869	15424	25380	25406	34114	34114					0.04447535837425676
LKETYKPY	8	Unmodified	_LKETYKPY_					0	0	0			REV__ENST00000282272.14_1_2:197853572-197853662:-|nuORF	REV__ENST00000282272.14_1_2:197853572-197853662:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.2730712890625	2	521.2844	1040.55425	-1.6401	-0.00085497	3.09	0.0016107	1.4498	0.00075578	521.2849876968058	95.481	0.85532	93.012	92.711	93.566	-2.4685					24	16	3	0	0	0	0.028476	1	8452	8452		24.203	0	1	31998	+		30870	24121	25381	25407	34115	34115					0.035592247287468126
LKETYLITL	9	Unmodified	_LKETYLITL_					0	0	0		tr|A0A553SG45|A0A553SG45_NIACILipoproteinOS=NialliacirculansOX=1397GN=CEQ21_10035PE=4SV=1	tr|A0A553SG45|A0A553SG45_NIACILipoproteinOS=NialliacirculansOX=1397GN=CEQ21_10035PE=4SV=1	tr|A0A553SG45|A0A553SG45_NIACILipoproteinOS=NialliacirculansOX=1397GN=CEQ21_10035PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.3282470703125	2	547.328808	1092.64306	-1.4276	-0.00078134	-1.6956	-0.00092804	-3.1231	-0.0017094	547.3278680090106	95.35	1.9184	92.881	92.31	94.229	-2.4685					103	37	4	0	0	0	0.24951	2	8412	8373;8412		68.787	10.005	1	1430500			30871	33117	25382	25408	34116;34117	34117					0.10044639968418778
LKEVCLRGR	9	Unmodified	_LKEVCLRGR_					0	0	0		ENST00000404590.1_1_2:148602260-148602681:+|nuORF	ENST00000404590.1_1_2:148602260-148602681:+|nuORF	ENST00000404590.1_1_2:148602260-148602681:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.2952880859375	2	537.316043	1072.61753	0.83206	0.00044708	3.5173	0.0018899	4.3494	0.002337	537.3177250617648	90.604	0.39429	89.302	89.028	89.422	-1.302					11	7	2	0	0	0	0.027462	1	7990	7990		18.262	1.7889	1	8729.8			30872	11452	25383	25409	34118	34118					0.0841288696499305
LKEVFNSR	8	Unmodified	_LKEVFNSR_					0	0	0		tr|A0A7D6VPP9|A0A7D6VPP9_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19585PE=3SV=1	tr|A0A7D6VPP9|A0A7D6VPP9_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19585PE=3SV=1	tr|A0A7D6VPP9|A0A7D6VPP9_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19585PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	496.7814636230469	2	496.779816	991.545079	0.69323	0.00034438	1.5261	0.00075811	2.2193	0.0011025	496.7801088570681	81.412	0.6553	81.412	81.12	81.776	0					54	15	4	0	0	0	0.6345	1	8370	8370		56.721	1.9447	1	6629000			30873	34787	25384	25410	34119	34119					0.04896876163093111
LKEVVTETL	9	Unmodified	_LKEVVTETL_					0	0	0		ENSG00000172167|ENST00000305949|MTBP	ENSG00000172167|ENST00000305949|MTBP	ENSG00000172167|ENST00000305949|MTBP	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2919921875	2	516.30279	1030.59103	1.3386	0.0006911	3.4796	0.0017965	4.8182	0.0024876	516.3047886752671	148.52	0.24643	148.52	148.32	148.57	0					6	4	2	0	0	0	0.027453	1	17367	17367		30.318	0	1	17381			30874	7271	25385	25411	34120	34120					0.07695476554658853
LKFDKSQLT	9	Unmodified	_LKFDKSQLT_					0	0	0			REV__nc|ENSG00000168386|Q4L180-5|FILIP1L	REV__nc|ENSG00000168386|Q4L180-5|FILIP1L	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3079833984375	2	540.308406	1078.60226	1.0443	0.00056423	2.0015	0.0010814	3.0457	0.0016456	540.309234949539	130.25	0.98904	129.14	128.83	129.82	-1.1121					35	19	2	0	0	0	0.61365	1	10340	10340		30.318	1.1682	1	40483	+		30875	21369	25386	25412	34121	34121					0.06610298648797652
LKFFGMFK	8	Unmodified	_LKFFGMFK_					0	0	0		tr|A0A553SII7|A0A553SII7_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14885PE=3SV=1	tr|A0A553SII7|A0A553SII7_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14885PE=3SV=1	tr|A0A553SII7|A0A553SII7_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14885PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.2662353515625	2	509.283149	1016.55174	-0.64656	-0.00032928	-1.3914	-0.00070861	-2.038	-0.0010379	509.28237504654857	28.663	0.49841	28.663	28.489	28.987	0					14	9	3	0	0	0	0.028476	1	979	979		33.516	4.3455	1	102060			30876	33384	25387	25413	34122	34122					0.04413097790109077
LKFHGGENN	9	Unmodified	_LKFHGGENN_					0	0	0			REV__ENST00000585268.1_1_17:29101344-29111375:-|nuORF	REV__ENST00000585268.1_1_17:29101344-29111375:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.302734375	2	508.251423	1014.48829	-0.84924	-0.00043163	1.405	0.00071409	0.55575	0.00028246	508.25380313628864	91.881	0.1521	89.338	89.212	89.364	-2.5425					4	2	2	0	0	0	0.027462	1	7953	7953		40.778	11.629	1	5103.1	+		30877	21949	25388	25414	34123	34123					-0.018371713934357103
LKFKDKLL	8	Unmodified	_LKFKDKLL_					0	0	0		ENST00000608637.1_1_10:46221881-46222187:-|nuORF	ENST00000608637.1_1_10:46221881-46222187:-|nuORF	ENST00000608637.1_1_10:46221881-46222187:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	502.8304443359375	2	502.828778	1003.643	1.3852	0.00069652	0.58316	0.00029323	1.9684	0.00098976	502.82893180421246	93.541	1.9822	93.541	93.221	95.204	0					93	45	4	0	0	0	0.64026	1	10225	10225		55.504	2.1528	1	14933000			30878	14298	25389	25415	34124	34124					0.14132684759090353
LKFKNIIN	8	Unmodified	_LKFKNIIN_					0	0	0		nc|ENSG00000048649|Q96T23-2|RSF1;ENSG00000048649|ENST00000308488|RSF1;ENST00000534794.1_1_11:77413524-77475723:-|nuORF	nc|ENSG00000048649|Q96T23-2|RSF1	nc|ENSG00000048649|Q96T23-2|RSF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.79425048828125	2	495.310752	988.606951	0.0999	4.9481E-05	0.0022136	1.0964E-06	0.10211	5.0578E-05	495.3105584605557	98.426	1.1174	96.047	95.624	96.742	-2.3786					37	21	2	0	0	0	0.028476	1	8712	8712		38.806	8.9646	1	101260			30879	1158	25390	25416	34125	34125					0.11219227582228086
LKFLRPSP	8	Unmodified	_LKFLRPSP_					0	0	0		ABI3BP|p.A266Kfs*13|1|0.02|ENSG00000154175|chr3:100875550-100875551|-/TT|frameshift_variant;ENST00000475896.5_1_3:100583650-100712249:-|nuORF;nc|ENSG00000154175|Q7Z7G0|ABI3BP;ABI3BP-TFG|1|fusion;ENSG00000154175|ENST00000471714|ABI3BP	ABI3BP|p.A266Kfs*13|1|0.02|ENSG00000154175|chr3:100875550-100875551|-/TT|frameshift_variant	ABI3BP|p.A266Kfs*13|1|0.02|ENSG00000154175|chr3:100875550-100875551|-/TT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	479.29888916015625	2	479.297645	956.580737	-0.34127	-0.00016357	0.3243	0.00015544	-0.016968	-8.1328E-06	479.2976220571187	61.763	0.91955	61.763	61.458	62.378	0					54	21	4	0	0	0	0.2826	1	5486	5486		110.34	0	1	3503600			30880	10	25391	25417	34126	34126					0.10070958410756248
LKFLRRLL	8	Unmodified	_LKFLRRLL_					0	0	0			REV__tr|A0A553SMT2|A0A553SMT2_NIACISerineproteaseOS=NialliacirculansOX=1397GN=CEQ21_23035PE=4SV=1	REV__tr|A0A553SMT2|A0A553SMT2_NIACISerineproteaseOS=NialliacirculansOX=1397GN=CEQ21_23035PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8094482421875	2	529.863486	1057.71242	-0.68533	-0.00036313	2.3269	0.0012329	1.6415	0.0008698	529.8654448953156	104.61	0.20467	104.61	104.54	104.74	0					5	4	2	0	0	0	0.028476	1	11734	11734		20.482	0	1	156080	+		30881	30367	25392	25418	34127	34127					0.18587188498509022
LKFRACLKIL	10	Unmodified	_LKFRACLKIL_					0	0	0		nc|ENSG00000172869|Q9Y485|DMXL1;ENSG00000172869|ENST00000539542|DMXL1;DMXL2|p.P2585Efs*17|1|0.03|ENSG00000104093|chr15:51464727-51464728|-/CTGAGATTGCACCACTGCTC|frameshift_variant;DMXL2|p.P2585Lfs*7|1|0.03|ENSG00000104093|chr15:51464726-51464727|-/A|frameshift_variant;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;nc|ENSG00000104093|Q8TDJ6-2|DMXL2	nc|ENSG00000172869|Q9Y485|DMXL1;DMXL2|p.P2585Efs*17|1|0.03|ENSG00000104093|chr15:51464727-51464728|-/CTGAGATTGCACCACTGCTC|frameshift_variant;nc|ENSG00000104093|Q8TDJ6|DMXL2	nc|ENSG00000104093|Q8TDJ6|DMXL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	602.7899780273438	2	602.883561	1203.75257	0.83667	0.00050441	2.2313	0.0013452	3.068	0.0018496	602.884837146254	64.396	0.58478	60.921	60.637	61.222	-3.475					21	11	2	0	0	0	0.027021	1	4594	4594		29.15	11.785	1	37413			30882	2352;7324;744	25393	25419	34128	34128					0.15884367106741593
LKFRACLKIL	10	Unmodified	_LKFRACLKIL_					0	0	0		nc|ENSG00000172869|Q9Y485|DMXL1;ENSG00000172869|ENST00000539542|DMXL1;DMXL2|p.P2585Efs*17|1|0.03|ENSG00000104093|chr15:51464727-51464728|-/CTGAGATTGCACCACTGCTC|frameshift_variant;DMXL2|p.P2585Lfs*7|1|0.03|ENSG00000104093|chr15:51464726-51464727|-/A|frameshift_variant;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;nc|ENSG00000104093|Q8TDJ6-2|DMXL2	nc|ENSG00000172869|Q9Y485|DMXL1;DMXL2|p.P2585Efs*17|1|0.03|ENSG00000104093|chr15:51464727-51464728|-/CTGAGATTGCACCACTGCTC|frameshift_variant;nc|ENSG00000104093|Q8TDJ6|DMXL2	nc|ENSG00000104093|Q8TDJ6|DMXL2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	602.883561	1203.75257	-1.9497	-0.0011754	5.1139	0.0030831	3.1642	0.0019077	602.8864214425138	63.453	0.8411	60.709	60.32	61.161	-2.7444	-0.023702	0.0033792	NaN	44.117	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16235			30883	2352;7324;744	25393	25419							0.15884367106741593
LKFRACLKIL	10	Unmodified	_LKFRACLKIL_					0	0	0		nc|ENSG00000172869|Q9Y485|DMXL1;ENSG00000172869|ENST00000539542|DMXL1;DMXL2|p.P2585Efs*17|1|0.03|ENSG00000104093|chr15:51464727-51464728|-/CTGAGATTGCACCACTGCTC|frameshift_variant;DMXL2|p.P2585Lfs*7|1|0.03|ENSG00000104093|chr15:51464726-51464727|-/A|frameshift_variant;nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;nc|ENSG00000104093|Q8TDJ6-2|DMXL2	nc|ENSG00000172869|Q9Y485|DMXL1;DMXL2|p.P2585Efs*17|1|0.03|ENSG00000104093|chr15:51464727-51464728|-/CTGAGATTGCACCACTGCTC|frameshift_variant;nc|ENSG00000104093|Q8TDJ6|DMXL2	nc|ENSG00000104093|Q8TDJ6|DMXL2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	602.883561	1203.75257	3.3274	0.002006	-0.54586	-0.00032909	2.7816	0.001677	602.8830773006634	63.587	0.93733	60.568	60.279	61.216	-3.0192	-0.16465	-0.0034451	NaN	44.117	22	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22928			30884	2352;7324;744	25393	25419							0.15884367106741593
LKFRLGLQTY	10	Unmodified	_LKFRLGLQTY_					0	0	0			REV__nc|ENSG00000188747|Q86UR1-3|NOXA1	REV__nc|ENSG00000188747|Q86UR1-3|NOXA1	MULTI-SECPEP	OvCa9_classI_Rep2	2	413.89520263671875	3	413.580041	1237.71829	0.31153	0.00012884	0.27205	0.00011251	0.58358	0.00024136	413.9152187345372	46.877	0.19898	44.167	43.993	44.192	-2.7097					5	3	2	0	0	0	0.027187	1	2823	2823		25.126	14.029	1	4096	+		30885	22733	25394	25420	34129	34129					0.10894242219501393
LKFRPLHVEV	10	Unmodified	_LKFRPLHVEV_					0	0	0			REV__ENSG00000206072|ENST00000544088|SERPINB11	REV__ENSG00000206072|ENST00000544088|SERPINB11	MULTI-MSMS	OvCa9_classI_Rep3	3	619.3727416992188	2	619.374415	1236.73428	-5.649	-0.0034989	1.4512	0.00089884	-4.1978	-0.0026	619.3752552398936	159.28	1.2139	158.02	157.66	158.88	-1.267					65	23	4	0	0	0	0.7759	1	13805	13805		21.96	1.9631	1	112740	+		30886	23232	25395	25421	34130	34130					0.12537948456406411
LKFSLQSKGV	10	Unmodified	_LKFSLQSKGV_					0	0	0		ENSG00000180878|ENST00000316375|C11orf42	ENSG00000180878|ENST00000316375|C11orf42	ENSG00000180878|ENST00000316375|C11orf42	MULTI-MSMS	OvCa9_classI_Rep3	3	553.82958984375	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.74374	1	11904	11904		25.574	4.6271	1	308210			30887	7892	25396	25422	34131	34131					0.10094577919812764
LKFVLATIAE	10	Unmodified	_LKFVLATIAE_					0	0	0		nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;DNAH10|p.N3904Vfs*37|1|0.07|ENSG00000197653|chr12:123926777-123926778|-/GGTACAGAGAAGTCCCTGCC|frameshift_variant;DNAH10|p.R2161Nfs*35|1|0.03|ENSG00000197653|chr12:123861095-123861096|-/TAACAGTGAAGGGAAG|frameshift_variant	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.8111572265625	2	552.8368	1103.65905	1.047	0.00057885	0.89917	0.00049709	1.9462	0.0010759	552.8369501207444	131.41	0.47066	131.41	131.25	131.72	0					19	9	3	0	0	0	0.026464	1	15263	15263		69.628	30.375	1	96096			30888	8733	25397	25423	34132	34132					0.11136346205330483
LKFYTEAR	8	Unmodified	_LKFYTEAR_					0	0	0			REV__ENSG00000139865|ENST00000553443|TTC6	REV__ENSG00000139865|ENST00000553443|TTC6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.2782592773438	2	514.282192	1026.54983	-0.26982	-0.00013876	-3.2053	-0.0016484	-3.4751	-0.0017872	514.2804177249086	65.14	0.62858	61.655	61.358	61.987	-3.4854					14	12	2	0	0	0	0.028476	1	4697	4697		10.866	0	1	41815	+		30889	19638	25398	25424	34133	34133					0.037617603058379245
LKGFGSKFW	9	Unmodified	_LKGFGSKFW_					0	0	0			REV__tr|A0A553SFH5|A0A553SFH5_NIACIDoxXfamilymembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_08875PE=4SV=1	REV__tr|A0A553SFH5|A0A553SFH5_NIACIDoxXfamilymembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_08875PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.7789916992188	2	535.295102	1068.57565	0.50162	0.00026852	0.13997	7.4923E-05	0.64159	0.00034344	535.295303687521	72.067	0.1246	72.067	72	72.125	0					4	2	2	0	0	0	0.027462	1	7006	7006		35.618	0	1	485240	+		30890	29579	25399	25425	34134	34134					0.044106545481326975
LKGGPTSLEAG	11	Unmodified	_LKGGPTSLEAG_					0	0	0			REV__nc|ENSG00000170854|Q8IUF8-3|RIOX2	REV__nc|ENSG00000170854|Q8IUF8-3|RIOX2	MULTI-MSMS	OvCa9_classI_Rep3	3	515.283203125	2	515.282389	1028.55022	0.94124	0.00048501	-1.1969	-0.00061674	-0.25566	-0.00013174	515.2818157223961	106.61	4.2629	105.34	104.28	108.54	-1.267					165	82	5	0	0	0	0.71498	1	7602	7602		24.519	1.4767	1	4317700	+		30891	21569	25400	25426	34135	34135					0.037091352350216766
LKGHRGLGGL	10	Unmodified	_LKGHRGLGGL_					0	0	0		ENST00000567696.1_1_16:777422-777680:+|nuORF;ENST00000569143.1_1_16:777422-777998:+|nuORF;ENST00000561750.1_1_16:777422-778482:+|nuORF	ENST00000567696.1_1_16:777422-777680:+|nuORF	ENST00000567696.1_1_16:777422-777680:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	504.2987365722656	2	504.309075	1006.6036	-0.081349	-4.1025E-05	0.84624	0.00042677	0.76489	0.00038574	504.3095321026445	104.69	0.77875	103.25	102.97	103.75	-1.4347					36	14	3	0	0	0	0.026582	1	7285	7285		42.396	5.237	1	77857			30892	13759	25401	25427	34136	34136					0.10055977528247695
LKGKHEESS	9	Unmodified	_LKGKHEESS_					0	0	0			REV__nc|ENSG00000146414|Q149N8-4|SHPRH	REV__nc|ENSG00000146414|Q149N8-4|SHPRH	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7628479003906	2	507.764363	1013.51417	-1.0585	-0.00053749	-1.5415	-0.00078271	-2.6	-0.0013202	507.76339249084987	120.97	3.7026	120.77	119.77	123.47	-0.19719					124	74	3	0	0	0	0.56889	1	11680	11680		35.618	1.4457	1	110330	+		30893	20017	25402	25428	34137	34137					0.007956780581935163
LKGKKQKQWK	10	Unmodified	_LKGKKQKQWK_					0	0	0		ENST00000420679.1_1_2:139308594-139326647:+|nuORF	ENST00000420679.1_1_2:139308594-139326647:+|nuORF	ENST00000420679.1_1_2:139308594-139326647:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	636.3984985351562	2	636.400964	1270.78738	-5.7408	-0.0036534	1.6112	0.0010253	-4.1296	-0.0026281	636.4018984737235	158.9	0.87512	158.67	158.43	159.3	-0.22696					33	16	3	0	0	0	0.89674	1	16152	16152		6.7355	0	1	52250			30894	11674	25403	25429	34138	34138					0.1628132623905003
LKGKVHIF	8	Unmodified	_LKGKVHIF_					0	0	0		nc|ENSG00000130224|Q5VUJ6-2|LRCH2;ENSG00000130224|ENST00000317135|LRCH2	nc|ENSG00000130224|Q5VUJ6-2|LRCH2	nc|ENSG00000130224|Q5VUJ6-2|LRCH2	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.2562255859375	2	471.300188	940.585822	0.45593	0.00021488	0.55313	0.00026069	1.0091	0.00047557	471.30065094206907	46.016	0.5676	46.016	45.844	46.412	0					23	12	4	0	0	0	0.028476	1	3256	3256		21.702	0	1	406330			30895	3969	25404	25430	34139	34139					0.11315262273376447
LKGKVKGK	8	Unmodified	_LKGKVKGK_					0	0	0		ENST00000502245.1_1_4:36258154-36274888:+|nuORF	ENST00000502245.1_1_4:36258154-36274888:+|nuORF	ENST00000502245.1_1_4:36258154-36274888:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	429.3016052246094	2	429.300188	856.585822	0.89098	0.0003825	-0.89452	-0.00038402	-0.0035335	-1.517E-06	429.2996261951719	66.854	0.6373	66.854	66.7	67.337	0					26	15	3	0	0	0	0.67745	1	6223	6223		47.916	14.4	1	1342100			30896	12846	25405	25431	34140	34140					0.15179262273375116
LKGLKRQHTN	10	Unmodified	_LKGLKRQHTN_					0	0	0		HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|75|3|sense	HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|75|3|sense	HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|75|3|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8557739257812	2	597.856921	1193.69929	-2.7036	-0.0016164	1.7084	0.0010214	-0.99524	-0.00059501	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.64697	1	12563	12563		36.447	6.129	1	591030			30897	14439	25406	25432	34141	34141					0.11018705648461946
LKGNARYNGGE	11	Unmodified	_LKGNARYNGGE_					0	0	0			REV__tr|A0A553SRW9|A0A553SRW9_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_01990PE=4SV=1	REV__tr|A0A553SRW9|A0A553SRW9_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_01990PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	589.82421875	2	589.799269	1177.58398	-0.94762	-0.00055891	3.6128	0.0021308	2.6652	0.0015719	590.3038870064375	76.426	2.5105	74.572	73.887	76.397	-1.854					67	47	2	0	0	0	0.025332	1	6265	6265		41.427	11.109	1	122410	+		30898	30771	25407	25433	34142	34142					0.0022955672679927375
LKGNARYNGGE	11	Unmodified	_LKGNARYNGGE_					0	0	0			REV__tr|A0A553SRW9|A0A553SRW9_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_01990PE=4SV=1	REV__tr|A0A553SRW9|A0A553SRW9_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_01990PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	589.799269	1177.58398	0.95885	0.00056553	0.29313	0.00017289	1.252	0.00073841	589.7990352326581	74.561	0.79723	74.561	74.249	75.046	0	-0.0053328	-0.00093598	NaN	49.536	45	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2904100	+		30899	30771	25407	25433							0.0022955672679927375
LKGNGGFL	8	Unmodified	_LKGNGGFL_					0	0	0			REV__CON__Q9D312	REV__CON__Q9D312	MULTI-MSMS	OvCa9_classI_Rep2	2	403.2320861816406	2	403.231971	804.449388	2.1395	0.00086272	-2.2493	-0.00090701	-0.10982	-4.4282E-05	403.2309156616357	86.891	2.0023	85.46	85.069	87.071	-1.4311					88	39	4	0	0	0	0.64377	1	7555	7555		54.765	2.4655	1	373290	+	+	30900	16224	25408	25434	34143	34143					0.03934148042844754
LKGPLSLRPV	10	Unmodified	_LKGPLSLRPV_					0	0	0			REV__nc|ENSG00000157837|Q8TCT6-3|SPPL3	REV__nc|ENSG00000157837|Q8TCT6-3|SPPL3	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.250732421875	2	540.350409	1078.68626	-0.44526	-0.0002406	0.18107	9.7839E-05	-0.26419	-0.00014276	540.3503670600401	55.243	1.5101	55.243	54.378	55.888	0					57	35	2	0	0	0	0.026602	1	4495	4495		65.465	38.772	1	402010	+		30901	20536	25409	25435	34144	34144					0.15006874536379655
LKGPNEPD	8	Unmodified	_LKGPNEPD_					0	0	0			REV__ENSG00000007216|ENST00000314669|SLC13A2	REV__ENSG00000007216|ENST00000314669|SLC13A2	MULTI-SECPEP	OvCa99_classI_Rep5	1	434.2756652832031	2	435.2218	868.429047	3.4657	0.0015083	3.8864	0.0016914	7.3521	0.0031998	435.22340259175377	87.913	0.75558	87.913	87.671	88.426	0					35	17	3	0	0	0	0.028476	1	9313	9313		24.203	11.996	1	1930000	+		30902	16431	25410	25436	34145	34145					-0.01043067407624676
LKGQGVIEVP	10	Unmodified	_LKGQGVIEVP_					0	0	0			REV__ENSG00000147912|ENST00000432825|FBXO10	REV__ENSG00000147912|ENST00000432825|FBXO10	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.8369750976562	2	520.310949	1038.60735	-0.22849	-0.00011888	3.7287	0.0019401	3.5002	0.0018212	520.3126896007332	115.37	1.5812	115.25	114.55	116.13	-0.11777					37	31	2	0	0	0	0.026915	1	10987	10987		27.882	4.8398	1	36459	+		30903	20088	25411	25437	34146	34146					0.08958602511415847
LKGRYQKDL	9	Unmodified	_LKGRYQKDL_					0	0	0		tr|A0A553STS3|A0A553STS3_NIACI3-hydroxyacyl-CoAdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_05460PE=4SV=1	tr|A0A553STS3|A0A553STS3_NIACI3-hydroxyacyl-CoAdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_05460PE=4SV=1	tr|A0A553STS3|A0A553STS3_NIACI3-hydroxyacyl-CoAdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_05460PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.351318359375	2	560.827298	1119.64004	2.4371	0.0013668	-0.73094	-0.00040993	1.7062	0.00095687	560.8268725748752	78.003	0.7852	78.003	77.629	78.415	0					53	18	4	0	0	0	0.027462	1	7865	7865		30.318	0	1	1841300			30904	34526	25412	25438	34147	34147					0.08500809634256257
LKGSCKWIR	9	Unmodified	_LKGSCKWIR_					0	0	0		ENSG00000109084|ENST00000226230|TMEM97	ENSG00000109084|ENST00000226230|TMEM97	ENSG00000109084|ENST00000226230|TMEM97	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.8126220703125	2	545.813136	1089.61172	-0.33129	-0.00018082	1.7519	0.00095621	1.4206	0.00077539	546.31455904177	78.654	0.56041	75.903	75.619	76.179	-2.7514					17	11	2	0	0	0	0.027453	1	6379	6379		54.776	12.38	1	32148			30905	2697	25413	25439	34148	34148					0.0704978845333244
LKGTGRARP	9	Unmodified	_LKGTGRARP_					0	0	0		nc|ENSG00000266733|Q9UFV1|TBC1D29P	nc|ENSG00000266733|Q9UFV1|TBC1D29P	nc|ENSG00000266733|Q9UFV1|TBC1D29P	MULTI-MSMS	OvCa9_classI_Rep3	3	478.2922668457031	2	478.293425	954.572297	1.9069	0.00091204	-1.2076	-0.00057756	0.69932	0.00033448	478.29162556845864	63.964	0.99544	60.971	60.701	61.696	-2.9933					35	19	4	0	0	0	0.63422	1	2431	2431		27.882	0	1	83815			30906	15368	25414	25440	34149	34149					0.09319404494124228
LKGTMSLTF	9	Unmodified	_LKGTMSLTF_					0	0	0		nc|ENSG00000156920|Q8IZF6-2|ADGRG4;nc|ENSG00000156920|Q8IZF6-3|ADGRG4;ENSG00000156920|ENST00000394143|ADGRG4	nc|ENSG00000156920|Q8IZF6-2|ADGRG4	nc|ENSG00000156920|Q8IZF6-2|ADGRG4	MULTI-MSMS	OvCa9_classI_Rep3	3	499.27227783203125	2	499.272978	996.531403	-0.72327	-0.00036111	-2.9742	-0.0014849	-3.6975	-0.0018461	499.271356214281	89.338	1.5163	87.207	86.846	88.362	-2.1309					90	29	4	0	0	0	0.14998	1	5496	5496		84.916	5.4645	1	2067700			30907	5863	25415	25441	34150	34150					0.03299882339626947
LKGTMSLTF	9	Unmodified	_LKGTMSLTF_					0	0	0		nc|ENSG00000156920|Q8IZF6-2|ADGRG4;nc|ENSG00000156920|Q8IZF6-3|ADGRG4;ENSG00000156920|ENST00000394143|ADGRG4	nc|ENSG00000156920|Q8IZF6-2|ADGRG4	nc|ENSG00000156920|Q8IZF6-2|ADGRG4	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.2730712890625	2	499.272978	996.531403	0.34489	0.0001722	-4.0998	-0.0020469	-3.7549	-0.0018747	499.2708039159593	89.798	1.4152	87.223	86.95	88.365	-2.575					83	27	4	0	0	0	0.18193	1	7747	7747		79.451	13.648	1	2048000			30908	5863	25415	25441	34151	34151					0.03299882339626947
LKGTNRHD	8	Unmodified	_LKGTNRHD_					0	0	0		tr|A0A7D7AC80|A0A7D7AC80_9CLOTBeta-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18145PE=3SV=1	tr|A0A7D7AC80|A0A7D7AC80_9CLOTBeta-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18145PE=3SV=1	tr|A0A7D7AC80|A0A7D7AC80_9CLOTBeta-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18145PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	470.7519836425781	2	470.75159	939.488627	-0.88064	-0.00041456	-0.071429	-3.3625E-05	-0.95207	-0.00044819	470.75146014176806	36.815	1.0029	36.815	36.618	37.621	0					42	21	3	0	0	0	0.66057	1	1963	1963		51.335	3.4199	1	1649700			30909	36223	25416	25442	34152	34152					0.016462483264263028
LKGTRPPPL	9	Unmodified	_LKGTRPPPL_					0	0	0			REV__HERVH-int_dup1185|chr3:112419020-112419250:-|1.5289827081739262|0.2447986091255933|2.64|365.0|3|2|sense	REV__HERVH-int_dup1185|chr3:112419020-112419250:-|1.5289827081739262|0.2447986091255933|2.64|365.0|3|2|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.7745666503906	2	489.808377	977.6022	-0.2413	-0.00011819	-0.04183	-2.0489E-05	-0.28313	-0.00013868	489.80831136259263	91.446	0.65617	88.903	88.657	89.313	-2.5425					23	12	2	0	0	0	0.027462	1	7951	7951		21.96	0	1	27597	+		30910	28219	25417	25443	34153	34153					0.11250343439451171
LKGVALLSDV	10	Unmodified	_LKGVALLSDV_					0	0	0		WWP2-TMCO7|1|fusion	WWP2-TMCO7|1|fusion	WWP2-TMCO7|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.8366394042969	2	507.813325	1013.6121	1.4277	0.00072501	-0.029005	-1.4729E-05	1.3987	0.00071028	507.81310769726474	91.117	0.44345	91.117	91.016	91.459	0					16	10	2	0	0	0	0.026891	1	9818	9818		24.519	0	1	276380			30911	36307	25418	25444	34154	34154					0.1058348665419544
LKGVKYVE	8	Unmodified	_LKGVKYVE_					0	0	0		tr|A0A7D6ZHF2|A0A7D6ZHF2_9CLOTPotassium-transportingATPaseATP-bindingsubunitOS=ClostridiumintestinaleOX=36845GN=kdpBPE=3SV=1	tr|A0A7D6ZHF2|A0A7D6ZHF2_9CLOTPotassium-transportingATPaseATP-bindingsubunitOS=ClostridiumintestinaleOX=36845GN=kdpBPE=3SV=1	tr|A0A7D6ZHF2|A0A7D6ZHF2_9CLOTPotassium-transportingATPaseATP-bindingsubunitOS=ClostridiumintestinaleOX=36845GN=kdpBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	468.76324462890625	2	468.28166	934.548768	2.5879	0.0012118	-0.24543	-0.00011493	2.3424	0.0010969	468.28147526265195	89.126	0.51256	89.126	88.922	89.435	0					23	12	2	0	0	0	0.028476	1	9527	9527		25.45	8.0852	1	731340			30912	35575	25419	25445	34155	34155					0.07887545936944207
LKHALSIPL	9	Unmodified	_LKHALSIPL_					0	0	0			REV__tr|A0A553SJQ2|A0A553SJQ2_NIACIS-adenosylmethioninesynthaseOS=NialliacirculansOX=1397GN=metKPE=3SV=1	REV__tr|A0A553SJQ2|A0A553SJQ2_NIACIS-adenosylmethioninesynthaseOS=NialliacirculansOX=1397GN=metKPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.28399658203125	2	496.318577	990.622602	0.26149	0.00012978	-0.18586	-9.2246E-05	0.075628	3.7535E-05	496.3184863247892	111.91	0.73725	110.4	110.16	110.9	-1.5111					20	13	2	0	0	0	0.027462	1	10361	10361		31.955	1.4512	1	19627	+		30913	30027	25420	25446	34156	34156					0.12691514099276446
LKHALSIPL	9	Unmodified	_LKHALSIPL_					0	0	0			REV__tr|A0A553SJQ2|A0A553SJQ2_NIACIS-adenosylmethioninesynthaseOS=NialliacirculansOX=1397GN=metKPE=3SV=1	REV__tr|A0A553SJQ2|A0A553SJQ2_NIACIS-adenosylmethioninesynthaseOS=NialliacirculansOX=1397GN=metKPE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	496.318577	990.622602	1.9725	0.00097899	0.25645	0.00012728	2.2289	0.0011063	496.3184511955983	110.45	0.40274	110.45	110.27	110.67	0	0.029245	0.00013996	NaN	17.365	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115490	+		30914	30027	25420	25446							0.12691514099276446
LKHFEESQD	9	Unmodified	_LKHFEESQD_					0	0	0			REV__nc|ENSG00000236320|P0C7P3-2|SLFN14	REV__nc|ENSG00000236320|P0C7P3-2|SLFN14	MULTI-MSMS	OvCa9_classI_Rep2	2	566.769775390625	2	566.767103	1131.51965	1.2321	0.00069833	1.7093	0.00096876	2.9414	0.0016671	566.7679597865578	29.255	0.80441	26.545	26.358	27.162	-2.7097					26	16	2	0	0	0	0.69123	1	681	681		20.947	1.8434	1	38221	+		30915	23410	25421	25447	34157	34157					-0.0408464315000856
LKHKKDPL	8	Unmodified	_LKHKKDPL_					0	0	0			REV__ENST00000540831.1_1_11:61292241-61300574:-|nuORF	REV__ENST00000540831.1_1_11:61292241-61300574:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	490.7742614746094	2	489.808377	977.6022	2.1929	0.0010741	-2.5083	-0.0012286	-0.31536	-0.00015446	489.8070284127808	90.256	0.742	88.953	88.581	89.323	-1.302					21	14	2	0	0	0	0.028476	1	8009	8009		33.516	3.0119	1	32651	+		30916	16488	25422	25448	34158	34158					0.11250343439451171
LKHKKYMTIAL	11	Unmodified	_LKHKKYMTIAL_					0	0	0			REV__IFT172|p.R1483Sfs*10|1|0.16|ENSG00000138002|chr2:27447902-27447903|-/ACTGCAAGCTCCGCTTCCCGGGTTCA|frameshift_variant	REV__IFT172|p.R1483Sfs*10|1|0.16|ENSG00000138002|chr2:27447902-27447903|-/ACTGCAAGCTCCGCTTCCCGGGTTCA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	448.9123229980469	3	449.272331	1344.79516	0.30667	0.00013778	2.0589	0.00092499	2.3655	0.0010628	449.27296876803405	35.59	0.27683	35.59	35.384	35.661	0					9	5	2	0	0	0	0.026033	1	1801	1801		17.167	7.5206	1	33958	+		30917	19500	25423	25449	34159	34159					0.1365571744436238
LKHLCIPC	8	Unmodified	_LKHLCIPC_					0	0	0			REV__ENSG00000196704|ENST00000359904|AMZ2	REV__ENSG00000196704|ENST00000359904|AMZ2	MULTI-SECPEP	OvCa99_classI_Rep5	1	463.25640869140625	2	463.751159	925.487764	1.8234	0.0008456	-0.31506	-0.00014611	1.5083	0.00069949	463.75288748666145	136.01	0.33185	136.01	135.78	136.11	0					11	6	2	0	0	0	0.028476	1	15841	15841		35.201	0	1	47760	+		30918	22858	25424	25450	34160	34160					0.02203994361502737
LKHLIQTPS	9	Unmodified	_LKHLIQTPS_					0	0	0		CON__Q2UVX4	CON__Q2UVX4	CON__Q2UVX4	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.807861328125	2	518.811116	1035.60768	-0.9287	-0.00048182	-0.27481	-0.00014257	-1.2035	-0.00062439	518.81101868621	89.013	3.7261	86.41	85.882	89.609	-2.6027					155	73	4	0	0	0	0.50149	1	7708	7708		42.396	1.8235	1	7911300		+	30919	642	25425	25451	34161	34161					0.09130022231261137
LKHLLDYF	8	Unmodified	_LKHLLDYF_					0	0	0		tr|A0A553SG89|A0A553SG89_NIACIPolyprenylsynthetasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10395PE=4SV=1	tr|A0A553SG89|A0A553SG89_NIACIPolyprenylsynthetasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10395PE=4SV=1	tr|A0A553SG89|A0A553SG89_NIACIPolyprenylsynthetasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10395PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.2803344726562	2	524.794935	1047.57532	-0.99195	-0.00052057	-2.944	-0.001545	-3.936	-0.0020656	524.793029189548	63.279	1.0113	59.804	59.577	60.588	-3.475					30	20	2	0	0	0	0.028476	1	4432	4432		25.45	11.675	1	57622			30920	33128	25426	25452	34162	34162					0.05343234828274035
LKHLLDYF	8	Unmodified	_LKHLLDYF_					0	0	0		tr|A0A553SG89|A0A553SG89_NIACIPolyprenylsynthetasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10395PE=4SV=1	tr|A0A553SG89|A0A553SG89_NIACIPolyprenylsynthetasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10395PE=4SV=1	tr|A0A553SG89|A0A553SG89_NIACIPolyprenylsynthetasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10395PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	524.794935	1047.57532	-1.7018	-0.0008931	-2.4646	-0.0012934	-4.1664	-0.0021865	524.79303479355	62.494	0.9622	59.735	59.236	60.199	-2.7593	-0.034835	0.00024012	NaN	25.45	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20597			30921	33128	25426	25452							0.05343234828274035
LKHPLPAPPFL	11	Unmodified	_LKHPLPAPPFL_					0	0	0			REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.5692138671875	3	410.585015	1228.73321	3.0833	0.0012659	1.6273	0.00066814	4.7106	0.0019341	410.5856918182948	85.414	0.82596	85.414	85.004	85.83	0					31	19	2	0	0	0	0.025853	1	8926	8926		9.2118	0	1	199430	+		30922	18807	25427	25453	34163	34163					0.12799734087502657
LKHPNIITF	9	Unmodified	_LKHPNIITF_					0	0	0		nc|ENSG00000139625|Q12852|MAP3K12;ENSG00000139625|ENST00000547488|MAP3K12;ENST00000547020.1_1_12:53880221-53880452:-|nuORF	nc|ENSG00000139625|Q12852|MAP3K12	nc|ENSG00000139625|Q12852|MAP3K12	MULTI-SECPEP	OvCa9_classI_Rep2	2	542.2905883789062	2	541.821484	1081.62842	-1.1398	-0.00061756	-3.2082	-0.0017383	-4.348	-0.0023558	541.819712848246	75.306	1.9699	73.446	72.802	74.772	-1.8606					90	37	4	0	0	0	0.027455	1	6180	6180		51.335	5.3835	1	574430			30923	4790	25428	25454	34164	34164					0.09086612610917655
LKHPQAEEI	9	Unmodified	_LKHPQAEEI_					0	0	0		ENSG00000167880|ENST00000301607|EVPL;ENST00000587569.5_1_17:74014525-74023279:-|nuORF	ENSG00000167880|ENST00000301607|EVPL	ENSG00000167880|ENST00000301607|EVPL	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.79150390625	2	532.790381	1063.56621	-1.7072	-0.00090959	2.0759	0.001106	0.36869	0.00019644	532.7909915325047	106.25	1.348	104.23	104	105.35	-2.0161					60	25	4	0	0	0	0.33652	1	9663	9663		58.782	4.0056	1	351410			30924	6845	25429	25455	34165	34165					0.036968414719467546
LKHRCEKRG	9	Unmodified	_LKHRCEKRG_					0	0	0		tr|A0A7D6VT17|A0A7D6VT17_9CLOTLipidIIisoglutaminylsynthase(glutamine-hydrolyzing)subunitGatDOS=ClostridiumintestinaleOX=36845GN=gatDPE=3SV=1	tr|A0A7D6VT17|A0A7D6VT17_9CLOTLipidIIisoglutaminylsynthase(glutamine-hydrolyzing)subunitGatDOS=ClostridiumintestinaleOX=36845GN=gatDPE=3SV=1	tr|A0A7D6VT17|A0A7D6VT17_9CLOTLipidIIisoglutaminylsynthase(glutamine-hydrolyzing)subunitGatDOS=ClostridiumintestinaleOX=36845GN=gatDPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.8060302734375	2	563.816741	1125.61893	0.18418	0.00010384	-1.0264	-0.00057872	-0.84225	-0.00047487	563.8161032812185	100.56	0.67389	98.295	97.978	98.652	-2.2665					30	12	4	0	0	0	0.027462	1	9018	9018		32.812	3.6629	1	105490			30925	35078	25430	25456	34166	34166					0.061145210537461026
LKHSLEEEDE	10	Unmodified	_LKHSLEEEDE_					0	0	0		ENSG00000138190|ENST00000260762|EXOC6;nc|ENSG00000138190|Q8TAG9-2|EXOC6;ENST00000497262.1_1_10:94669265-94675727:+|nuORF	ENSG00000138190|ENST00000260762|EXOC6	ENSG00000138190|ENST00000260762|EXOC6	MULTI-SECPEP	OvCa99_classI_Rep5	1	614.8314208984375	2	614.788232	1227.56191	0.9886	0.00060778	1.9212	0.0011811	2.9098	0.0017889	614.7898445865003	150.95	0.40152	150.95	150.74	151.15	0					17	7	3	0	0	0	0.026826	1	17659	17659		36.447	0	1	38075			30926	4668	25431	25457	34167	34167					-0.042767125322598076
LKHSREYLK	9	Unmodified	_LKHSREYLK_					0	0	0			REV__nc|ENSG00000104067|Q07157-2|TJP1	REV__nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MSMS	OvCa99_classI_Rep5	1	587.3396606445312	2	587.340572	1172.66659	-0.047811	-2.8081E-05	-0.14524	-8.5308E-05	-0.19305	-0.00011339	587.3404726043012	31.386	0.34087	31.386	31.218	31.559	0					19	6	4	0	0	0	0.51865	1	1291	1291		40.778	0.71999	1	187360	+		30927	17643	25432	25458	34168	34168					0.08716498525586758
LKIAKPLSI	9	Unmodified	_LKIAKPLSI_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OvCa99_classI_Rep5	1	491.837890625	2	491.836603	981.658653	2.0959	0.0010308	0.19423	9.5531E-05	2.2901	0.0011264	491.8365449518006	84.071	1.1216	84.071	83.841	84.963	0					63	26	4	0	0	0	0.22621	1	8758	8758		71.877	4.3838	1	5846900	+		30928	18823	25433	25459	34169	34169					0.1670897127612534
LKIASFLPK	9	Unmodified	_LKIASFLPK_					0	0	0			REV__ENST00000356860.7_1_7:81577170-81577284:-|nuORF	REV__ENST00000356860.7_1_7:81577170-81577284:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.81500244140625	2	508.828778	1015.643	-0.7053	-0.00035888	3.7932	0.0019301	3.0879	0.0015712	509.3303803209539	74.844	0.83025	72.872	72.271	73.102	-1.9711					29	15	3	0	0	0	0.027402	1	6123	6123		56.721	0	1	48560	+		30929	24773	25434	25460	34170	34170					0.13580684759074302
LKICSKNKK	9	Unmodified	_LKICSKNKK_					0	0	0		HERVK22-int_dup405|chr19:23557002-23557849:+|1.08382364310699|0.0263687417948669|5.36|399.0|19|3|sense	HERVK22-int_dup405|chr19:23557002-23557849:+|1.08382364310699|0.0263687417948669|5.36|399.0|19|3|sense	HERVK22-int_dup405|chr19:23557002-23557849:+|1.08382364310699|0.0263687417948669|5.36|399.0|19|3|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.8062744140625	2	531.328619	1060.64269	-1.8777	-0.00099769	-2.7529	-0.0014627	-4.6306	-0.0024604	531.3275753055049	41.885	1.0246	38.904	38.593	39.618	-2.9804					34	19	3	0	0	0	0.027461	1	1880	1880		49.442	8.8689	1	33950			30930	14471	25435	25461	34171	34171					0.11478941767586548
LKIGEVDL	8	Unmodified	_LKIGEVDL_					0	0	0			REV__tr|A0A7D6VXW2|A0A7D6VXW2_9CLOTIronhydrogenasesmallsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_14260PE=4SV=1	REV__tr|A0A7D6VXW2|A0A7D6VXW2_9CLOTIronhydrogenasesmallsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_14260PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	444.5661926269531	2	443.765843	885.517133	0.93545	0.00041512	0.0075917	3.3689E-06	0.94304	0.00041849	443.7656238962198	58.468	0.41892	58.468	58.194	58.613	0					15	9	2	0	0	0	0.028476	1	4991	4991		7.6903	0	1	341590	+		30931	31793	25436	25462	34172	34172					0.0697955318298682
LKIGRLEVT	9	Unmodified	_LKIGRLEVT_					0	0	0		ENST00000369836.8_1_1:110198802-110199018:+|nuORF	ENST00000369836.8_1_1:110198802-110199018:+|nuORF	ENST00000369836.8_1_1:110198802-110199018:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.2782592773438	2	514.826766	1027.63898	-0.60725	-0.00031263	0.23669	0.00012185	-0.37056	-0.00019078	514.8268276262608	65.366	1.5022	61.881	61.552	63.054	-3.4854					48	30	3	0	0	0	0.027462	1	4697	4697		31.53	1.2121	1	326030			30932	10906	25437	25463	34173	34173					0.12626595265373908
LKIGRLEVT	9	Unmodified	_LKIGRLEVT_					0	0	0		ENST00000369836.8_1_1:110198802-110199018:+|nuORF	ENST00000369836.8_1_1:110198802-110199018:+|nuORF	ENST00000369836.8_1_1:110198802-110199018:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.826766	1027.63898	0.056218	2.8943E-05	-0.26592	-0.0001369	-0.2097	-0.00010796	514.8265297956721	64.459	1.7029	61.734	61.389	63.092	-2.7245	-0.073453	-0.00010946	NaN	39.253	72	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	259900			30933	10906	25437	25463							0.12626595265373908
LKIHVGARL	9	Unmodified	_LKIHVGARL_					0	0	0			REV__ENST00000437534.3_1_15:43890378-43891468:+|nuORF	REV__ENST00000437534.3_1_15:43890378-43891468:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	503.8306579589844	2	503.829643	1005.64473	-0.18897	-9.5209E-05	-0.095954	-4.8345E-05	-0.28492	-0.00014355	503.8295661372009	58.634	0.97705	58.634	58.363	59.34	0					56	24	4	0	0	0	0.48324	1	4996	4996		44.117	0	1	6995600	+		30934	21162	25438	25464	34174	34174					0.14213738567696055
LKIIRLRTP	9	Unmodified	_LKIIRLRTP_					0	0	0			REV__nc|ENSG851|Q9QC07|ERVK-18_pol	REV__nc|ENSG851|Q9QC07|ERVK-18_pol	MULTI-SECPEP	OvCa9_classI_Rep2	2	555.7800903320312	2	555.3795	1108.74445	-1.0479	-0.00058199	0.31543	0.00017518	-0.73249	-0.00040681	555.3796261120837	62.298	0.70596	59.539	59.335	60.041	-2.7593					22	13	2	0	0	0	0.027462	1	4705	4705		18.262	11.069	1	26775	+		30935	29235	25439	25465	34175	34175					0.19442556181638793
LKIKDQAA	8	Unmodified	_LKIKDQAA_					0	0	0		nc|ENSG00000232872|Q8IX95|CTAGE3P	nc|ENSG00000232872|Q8IX95|CTAGE3P	nc|ENSG00000232872|Q8IX95|CTAGE3P	MULTI-MSMS	OvCa99_classI_Rep5	1	443.7723388671875	2	443.77146	885.528367	0.65363	0.00029006	0.91727	0.00040706	1.5709	0.00069712	443.77196899184446	50.97	0.98718	50.97	50.64	51.627	0					35	22	2	0	0	0	0.45246	1	3889	3889		82.305	2.854	1	3101700			30936	15331	25440	25466	34176	34176					0.08102375277132978
LKIKIMLGI	9	Unmodified	_LKIKIMLGI_					0	0	0		nc|ENSG00000120160|Q9NQ60-3|EQTN;ENSG00000120160|ENST00000380032|EQTN	nc|ENSG00000120160|Q9NQ60-3|EQTN	nc|ENSG00000120160|Q9NQ60-3|EQTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.2732543945312	2	514.848656	1027.68276	1.3128	0.00067591	-2.3011	-0.0011847	-0.98826	-0.0005088	514.847305991973	101.28	1.2278	101.28	100.94	102.17	0					61	28	3	0	0	0	0.027392	1	11268	11268		73.975	10.668	1	1538900			30937	3418	25441	25467	34177	34177					0.17002488438151886
LKIKNHSLQ	9	Unmodified	_LKIKNHSLQ_					0	0	0		nc|ENSG00000122483|Q5T9S5|CCDC18;ENSG00000122483|ENST00000690025|CCDC18;nc|ENSG00000122483|Q5T9S5-2|CCDC18;ENST00000421014.2_1_1:93687225-93704878:+|nuORF	nc|ENSG00000122483|Q5T9S5|CCDC18	nc|ENSG00000122483|Q5T9S5|CCDC18	MULTI-MSMS	OvCa99_classI_Rep5	1	540.8310546875	2	540.82984	1079.64513	-0.4469	-0.0002417	-0.057842	-3.1283E-05	-0.50474	-0.00027298	540.8297387248226	54.568	1.022	54.568	54.293	55.315	0					67	23	4	0	0	0	0.14998	1	4432	4432		84.916	0	1	7314400			30938	3535	25442	25468	34178	34178					0.10849113496897189
LKIKSLNN	8	Unmodified	_LKIKSLNN_					0	0	0			REV__ENSG00000138646|ENST00000264350|HERC5	REV__ENSG00000138646|ENST00000264350|HERC5	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.2467346191406	2	465.292559	928.570566	-0.0019742	-9.1859E-07	0.089594	4.1687E-05	0.087619	4.0769E-05	465.29247791518003	61.053	0.29686	61.053	60.859	61.156	0					11	6	3	0	0	0	0.028476	1	5342	5342		17.365	0	1	151400	+		30939	19553	25443	25469	34179	34179					0.10342350685516521
LKILPGNVAIL	11	Unmodified	_LKILPGNVAIL_					0	0	0		L1MEf_dup6140|chr8:143855850-143856370:+|1.5610221762686003|0.2389077802373403|2.71|429.0|29|2|anti-sense	L1MEf_dup6140|chr8:143855850-143856370:+|1.5610221762686003|0.2389077802373403|2.71|429.0|29|2|anti-sense	L1MEf_dup6140|chr8:143855850-143856370:+|1.5610221762686003|0.2389077802373403|2.71|429.0|29|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8812255859375	2	575.881542	1149.74853	2.6187	0.0015081	-2.856	-0.0016447	-0.23732	-0.00013667	575.8797536026407	130.77	1.5941	129.29	128.86	130.45	-1.4779					88	32	4	0	0	0	0.72466	1	12625	12625		19.997	0	1	237440			30940	14629	25444	25470	34180	34180					0.17964600884693027
LKIMIRDKL	9	Unmodified	_LKIMIRDKL_					0	0	0		ENSG00000203727|ENST00000367474|SAMD5	ENSG00000203727|ENST00000367474|SAMD5	ENSG00000203727|ENST00000367474|SAMD5	MULTI-MSMS	OvCa9_classI_Rep3	3	565.3626708984375	2	565.359919	1128.70529	1.1665	0.00065949	4.4697	0.002527	5.6362	0.0031865	565.3622496510778	122.79	1.6628	121.77	121.48	123.14	-1.0286					74	31	4	0	0	0	0.55011	1	9468	9468		37.812	2.1932	1	327540			30941	8927	25445	25471	34181	34181					0.14608087835767947
LKIMKPIKI	9	Unmodified	_LKIMKPIKI_					0	0	0		tr|A0A7D6VVG6|A0A7D6VVG6_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05100PE=4SV=1	tr|A0A7D6VVG6|A0A7D6VVG6_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05100PE=4SV=1	tr|A0A7D6VVG6|A0A7D6VVG6_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05100PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	542.3715209960938	2	542.369756	1082.72496	0.093673	5.0806E-05	3.09	0.0016759	3.1837	0.0017268	542.3713013214245	41.12	2.1196	38.411	38.093	40.213	-2.7097					118	42	4	0	0	0	0.55588	1	2117	2117		37.159	1.5408	1	313610			30942	35220	25446	25472	34182	34182					0.18690463846519378
LKIPISIEF	9	Unmodified	_LKIPISIEF_					0	0	0		ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;MOGS|p.P775Lfs*21|1|0.12|ENSG00000115275|chr2:74461466-74461467|-/CAAATCTGGCAAAAGCAATAGAGTTCAA|frameshift_variant;ENSG00000115275|ENST00000448666|MOGS	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.2949829101562	2	530.326068	1058.63758	-1.6194	-0.00085881	-1.3448	-0.0007132	-2.9642	-0.001572	530.325121194632	55.609	1.4207	52.314	51.7	53.12	-3.2944					68	27	3	0	0	0	0.027462	1	3452	3452		34.173	16.808	1	103410			30943	3081	25447	25473	34183	34183					0.11060961176622186
LKIPISIEF	9	Unmodified	_LKIPISIEF_					0	0	0		ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;MOGS|p.P775Lfs*21|1|0.12|ENSG00000115275|chr2:74461466-74461467|-/CAAATCTGGCAAAAGCAATAGAGTTCAA|frameshift_variant;ENSG00000115275|ENST00000448666|MOGS	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	530.326068	1058.63758	-0.18707	-9.921E-05	-5.47	-0.0029009	-5.6571	-0.0030001	530.3230464508432	52.433	0.35191	52.433	52.214	52.566	0	0.06603	-0.0042407	NaN	26.693	18	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	334480			30944	3081	25447	25473							0.11060961176622186
LKIPISIEF	9	Unmodified	_LKIPISIEF_					0	0	0		ENST00000462189.1_1_2:74688404-74690534:-|nuORF;nc|ENSG00000115275|Q13724-2|MOGS;MOGS|p.P775Lfs*21|1|0.12|ENSG00000115275|chr2:74461466-74461467|-/CAAATCTGGCAAAAGCAATAGAGTTCAA|frameshift_variant;ENSG00000115275|ENST00000448666|MOGS	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	ENST00000462189.1_1_2:74688404-74690534:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.326068	1058.63758	-1.7534	-0.00092989	-1.2875	-0.00068279	-3.0409	-0.0016127	530.3252755657473	55.167	1.3935	52.353	51.772	53.165	-2.8139	-0.013685	0.00019544	NaN	26.693	48	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46563			30945	3081	25447	25473							0.11060961176622186
LKIQCPWQ	8	Unmodified	_LKIQCPWQ_					0	0	0			REV__tr|A0A7D7A1N3|A0A7D7A1N3_9CLOT4Fe-4Sdiclusterdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16210PE=4SV=1	REV__tr|A0A7D7A1N3|A0A7D7A1N3_9CLOT4Fe-4Sdiclusterdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16210PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.8153381347656	2	508.273312	1014.53207	-0.75927	-0.00038592	-3.3645	-0.0017101	-4.1238	-0.002096	508.7720822215593	75.047	0.15476	73.076	72.999	73.154	-1.9711					4	2	2	0	0	0	0.028476	1	6171	6171		33.516	6.8227	1	5730.5	+		30946	32502	25448	25474	34184	34184					0.02538721779342268
LKIQKPKRHE	10	Unmodified	_LKIQKPKRHE_					0	0	0			REV__ENSG00000143674|ENST00000366624|MAP3K21	REV__ENSG00000143674|ENST00000366624|MAP3K21	MULTI-MSMS	OvCa9_classI_Rep4_	4	638.896240234375	2	638.896046	1275.77754	-0.53707	-0.00034313	-0.63851	-0.00040794	-1.1756	-0.00075107	638.8954846802164	100.88	1.8421	98.613	98.187	100.03	-2.2665					80	36	4	0	0	0	0.73378	1	9072	9072		26.693	4.733	1	266330	+		30947	19861	25449	25475	34185	34185					0.1506813823370976
LKIQLHSCP	9	Unmodified	_LKIQLHSCP_					0	0	0		SATB1|p.N758Ifs*4|1|0.11|ENSG00000182568|chr3:18349189-18349189|T/-|frameshift_variant;ENSG00000182568|ENST00000338745|SATB1;nc|ENSG00000182568|Q01826-2|SATB1;ENST00000482788.1_1_3:18456578-18457590:-|nuORF	SATB1|p.N758Ifs*4|1|0.11|ENSG00000182568|chr3:18349189-18349189|T/-|frameshift_variant	SATB1|p.N758Ifs*4|1|0.11|ENSG00000182568|chr3:18349189-18349189|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.792724609375	2	519.791869	1037.56919	-0.39548	-0.00020557	4.0333	0.0020965	3.6378	0.0018909	519.7938318646319	121.84	4.0005	120.49	119.9	123.9	-1.3479					152	78	4	0	0	0	0.27001	1	11472	11472		66.429	3.123	1	769080			30948	8008	25450	25476	34186	34186					0.0519039332509692
LKIRLQAYHTQ	11	Unmodified	_LKIRLQAYHTQ_					0	0	0		nc|ENSG00000004455|P54819-6|AK2;nc|ENSG00000004455|P54819-5|AK2;nc|ENSG00000004455|P54819-2|AK2;ENSG00000004455|ENST00000672715|AK2	nc|ENSG00000004455|P54819-6|AK2	nc|ENSG00000004455|P54819-6|AK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.2416076660156	3	457.601616	1369.78302	-0.27389	-0.00012533	-0.44773	-0.00020488	-0.72161	-0.00033021	457.93575133197083	58.884	0.38187	58.884	58.774	59.156	0					11	9	2	0	0	0	0.025908	1	5058	5058		16.53	0	1	201010			30949	826	25451	25477	34187	34187					0.1129181702549431
LKISKKPK	8	Unmodified	_LKISKKPK_					0	0	0		ENST00000474216.5_1_1:11126777-11137033:-|nuORF;nc|ENSG00000171824|Q01780-2|EXOSC10;ENSG00000171824|ENST00000376936|EXOSC10	ENST00000474216.5_1_1:11126777-11137033:-|nuORF	ENST00000474216.5_1_1:11126777-11137033:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.2562255859375	2	471.328945	940.643337	0.43777	0.00020633	-2.9407	-0.001386	-2.503	-0.0011797	471.3265241341462	46.092	0.39486	46.092	45.89	46.284	0					12	8	3	0	0	0	0.028476	1	3256	3256		24.203	0	1	153120			30950	7237	25452	25478	34188	34188					0.17064104478936315
LKISRGLIN	9	Unmodified	_LKISRGLIN_					0	0	0		ENST00000371541.5_1_1:52975296-52975329:-|nuORF	ENST00000371541.5_1_1:52975296-52975329:-|nuORF	ENST00000371541.5_1_1:52975296-52975329:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.84698486328125	2	507.326934	1012.63931	-0.40125	-0.00020357	0.27117	0.00013757	-0.13008	-6.5993E-05	507.32701285417204	41.356	0.66686	41.356	41.014	41.681	0					29	14	3	0	0	0	0.027343	1	2594	2594		25.574	0	1	273640			30951	10959	25453	25479	34189	34189					0.13350014985235248
LKISSEMNL	9	Unmodified	_LKISSEMNL_					0	0	0		tr|A0A7D7A027|A0A7D7A027_9CLOTHDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22400PE=4SV=1	tr|A0A7D7A027|A0A7D7A027_9CLOTHDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22400PE=4SV=1	tr|A0A7D7A027|A0A7D7A027_9CLOTHDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22400PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.804443359375	2	517.781167	1033.54778	-1.0175	-0.00052686	-1.0092	-0.00052257	-2.0268	-0.0010494	517.7798858397741	69.616	0.63008	66.135	65.811	66.442	-3.4812					23	12	2	0	0	0	0.027459	1	5181	5181		44.377	0	1	48659			30952	35984	25454	25480	34190	34190					0.03234963505747146
LKIVARPEL	9	Unmodified	_LKIVARPEL_					0	0	0		ENST00000393892.7_1_17:40127921-40128083:+|nuORF	ENST00000393892.7_1_17:40127921-40128083:+|nuORF	ENST00000393892.7_1_17:40127921-40128083:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.8369750976562	2	519.837134	1037.65972	-0.41648	-0.0002165	-0.50638	-0.00026324	-0.92287	-0.00047974	519.836895721936	116.58	1.0372	115.22	114.94	115.98	-1.3645					29	19	2	0	0	0	0.33652	1	10883	10883		58.782	2.0609	1	129200			30953	11256	25455	25481	34191	34191					0.14239185645033103
LKIVARPEL	9	Unmodified	_LKIVARPEL_					0	0	0		ENST00000393892.7_1_17:40127921-40128083:+|nuORF	ENST00000393892.7_1_17:40127921-40128083:+|nuORF	ENST00000393892.7_1_17:40127921-40128083:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	519.837134	1037.65972	0.59294	0.00030823	1.5295	0.0007951	2.1225	0.0011033	519.8377565781309	115.04	1.1693	115.04	114.74	115.91	0	-0.10002	0.0014795	NaN	58.782	47	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	530090			30954	11256	25455	25481							0.14239185645033103
LKIVFLSEL	9	Unmodified	_LKIVFLSEL_					0	0	0		tr|A0A7D6VUL8|A0A7D6VUL8_9CLOTMurR/RpiRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07695PE=4SV=1	tr|A0A7D6VUL8|A0A7D6VUL8_9CLOTMurR/RpiRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07695PE=4SV=1	tr|A0A7D6VUL8|A0A7D6VUL8_9CLOTMurR/RpiRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07695PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.783203125	2	531.333893	1060.65323	-1.5969	-0.0008485	-1.6232	-0.00086247	-3.2201	-0.001711	531.3328529449769	48.529	0.72392	45.421	45.09	45.814	-3.1077					35	13	3	0	0	0	0.027456	1	2647	2647		38.806	0	1	183690			30955	35194	25456	25482	34192	34192					0.12533247693659177
LKIVLEDPI	9	Unmodified	_LKIVLEDPI_					0	0	0			REV__ENSG00000155085|ENST00000424296|AK9;REV__nc|ENSG00000155085|Q5TCS8-3|AK9	REV__ENSG00000155085|ENST00000424296|AK9	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.31396484375	2	520.323525	1038.6325	0.79088	0.00041151	2.4699	0.0012851	3.2608	0.0016967	520.3238816744966	111.4	0.76301	111.4	111.02	111.79	0					32	16	3	0	0	0	0.027232	1	12661	12661		76.774	2.5191	1	411020	+		30956	20411;28940	25457	25483	34193	34193					0.11472657313993295
LKKCLIERFPQ	11	Unmodified	_LKKCLIERFPQ_					0	0	0			REV__ENSG00000174944|ENST00000309170|P2RY14	REV__ENSG00000174944|ENST00000309170|P2RY14	MULTI-MSMS	OvCa99_classI_Rep5	1	459.2696838378906	3	458.935719	1373.78533	1.7218	0.00079018	-2.2067	-0.0010127	-0.4849	-0.00022254	458.9346719442003	78.824	1.3808	78.824	78.093	79.474	0					94	33	4	0	0	0	0.54737	1	8017	8017		49.466	3.5577	1	3801800	+		30957	21860	25458	25484	34194	34194					0.11338529438944533
LKKDEPIW	8	Unmodified	_LKKDEPIW_					0	0	0		tr|A0A553SGC6|A0A553SGC6_NIACItrehaloseoperonrepressorOS=NialliacirculansOX=1397GN=treRPE=4SV=1	tr|A0A553SGC6|A0A553SGC6_NIACItrehaloseoperonrepressorOS=NialliacirculansOX=1397GN=treRPE=4SV=1	tr|A0A553SGC6|A0A553SGC6_NIACItrehaloseoperonrepressorOS=NialliacirculansOX=1397GN=treRPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.3096923828125	2	514.792392	1027.57023	2.4328	0.0012524	0.87679	0.00045136	3.3096	0.0017037	515.2938319608414	102.79	0.59569	102.79	102.38	102.98	0					28	13	4	0	0	0	0.028476	1	11491	11491		40.573	6.4001	1	482540			30958	33143	25459	25485	34195	34195					0.05754930965645144
LKKDQIVVQK	10	Unmodified	_LKKDQIVVQK_					0	0	0		nc|ENSG00000185482|Q96MF2-3|STAC3;nc|ENSG00000185482|Q96MF2-2|STAC3;ENSG00000185482|ENST00000332782|STAC3	nc|ENSG00000185482|Q96MF2-3|STAC3	nc|ENSG00000185482|Q96MF2-3|STAC3	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.8877258300781	3	400.255446	1197.74451	0.35029	0.00014021	1.1943	0.00047802	1.5446	0.00061823	400.25562938672755	43.664	0.38784	43.664	43.478	43.866	0					13	8	2	0	0	0	0.026618	1	2910	2910		50.034	0	1	46839			30959	8256	25460	25486	34196	34196					0.15354511390978587
LKKEEPHLL	9	Unmodified	_LKKEEPHLL_					0	0	0		nc|ENSG00000130038|Q9BSW2-1|CRACR2A;ENSG00000130038|ENST00000440314|CRACR2A	nc|ENSG00000130038|Q9BSW2-1|CRACR2A	nc|ENSG00000130038|Q9BSW2-1|CRACR2A	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8299560546875	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.58665	1	14180	14180		33.516	0.70317	1	245610			30960	15010	25461	25487	34197	34197					0.10094577919812764
LKKERTPS	8	Unmodified	_LKKERTPS_					0	0	0		nc|ENSG00000187634|Q96NU1-6|SAMD11;nc|ENSG00000187634|Q96NU1-4|SAMD11;nc|ENSG00000187634|Q96NU1|SAMD11;nc|ENSG00000187634|Q96NU1-5|SAMD11;ENSG00000187634|ENST00000616016|SAMD11	nc|ENSG00000187634|Q96NU1-6|SAMD11	nc|ENSG00000187634|Q96NU1-6|SAMD11	MULTI-MSMS	OvCa9_classI_Rep3	3	479.7873840332031	2	479.787641	957.56073	-0.2694	-0.00012926	-0.52811	-0.00025338	-0.79751	-0.00038264	479.787479769534	77.778	3.6765	75.425	74.734	78.41	-2.3527					193	72	5	0	0	0	0.25402	1	4110	4110		115.46	5.3391	1	4769100			30961	8421	25462	25488	34198	34198					0.0802516268013278
LKKFEDKAIT	10	Unmodified	_LKKFEDKAIT_					0	0	0			REV__ENST00000336032.3_1_6:89793930-89794134:+|nuORF	REV__ENST00000336032.3_1_6:89793930-89794134:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.307373046875	2	596.850438	1191.68632	-0.66495	-0.00039688	1.6522	0.00098613	0.98727	0.00058926	596.8511900829956	50.178	0.74117	50.178	49.768	50.509	0					27	16	3	0	0	0	0.026915	1	3793	3793		27.882	2.3082	1	171790	+		30962	24581	25463	25489	34199	34199					0.09814829745687348
LKKFIIFM	8	Unmodified	_LKKFIIFM_					0	0	0			REV__tr|A0A7D6VR41|A0A7D6VR41_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05415PE=4SV=1	REV__tr|A0A7D6VR41|A0A7D6VR41_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05415PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.6133422851562	2	520.322274	1038.63	0.64581	0.00033603	-0.70013	-0.0003643	-0.054328	-2.8268E-05	520.3216626740995	70.348	1.6088	67.629	67.306	68.915	-2.7196					89	31	4	0	0	0	0.028476	1	3194	3194		20.482	1.1219	1	438630	+		30963	31384	25464	25490	34200	34200					0.11222530375334827
LKKFKLKLL	9	Unmodified	_LKKFKLKLL_					0	0	0		nc|ENSG00000103490|Q9ULZ3-2|PYCARD;ENSG00000103490|ENST00000247470|PYCARD	nc|ENSG00000103490|Q9ULZ3-2|PYCARD	nc|ENSG00000103490|Q9ULZ3-2|PYCARD	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.8882446289062	2	565.90482	1129.79509	2.2967	0.0012997	-4.0764	-0.0023069	-1.7797	-0.0010072	565.9019849350836	117.81	0.32909	117.81	117.56	117.88	0					9	6	2	0	0	0	0.027462	1	13489	13489		23.042	10.836	1	61168			30964	2321	25465	25491	34201	34201					0.2353808550665235
LKKFLKHSHT	10	Unmodified	_LKKFLKHSHT_					0	0	0			REV__nc|ENSG00000021461|Q9HB55-4|CYP3A43	REV__nc|ENSG00000021461|Q9HB55-4|CYP3A43	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.86865234375	2	619.87204	1237.72953	-1.8762	-0.001163	-2.3116	-0.0014329	-4.1878	-0.0025959	619.8704234308321	147.79	3.8764	146.35	144.25	148.12	-1.4351					189	77	4	0	0	0	0.72319	1	14511	14511		27.882	4.8398	1	269210	+		30965	16261	25466	25492	34202	34202					0.1201706431365892
LKKFWTQYIF	10	Unmodified	_LKKFWTQYIF_					0	0	0			REV__ENSG00000179698|ENST00000323662|WDR97	REV__ENSG00000179698|ENST00000323662|WDR97	MULTI-SECPEP	OvCa9_classI_Rep2	2	459.2464599609375	3	458.592058	1372.75434	-0.46691	-0.00021412	3.2157	0.0014747	2.7488	0.0012606	458.92884144147536	60.933	0.52758	58.163	58.029	58.557	-2.7702					11	9	2	0	0	0	0.027349	1	4543	4543		20.837	0	1	20952	+		30966	22136	25467	25493	34203	34203					0.08287699396373682
LKKGRKARAS	10	Unmodified	_LKKGRKARAS_					0	0	0		ENST00000461503.2_1_3:27764114-27764180:-|nuORF	ENST00000461503.2_1_3:27764114-27764180:-|nuORF	ENST00000461503.2_1_3:27764114-27764180:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.8035278320312	2	557.862006	1113.70946	-0.19451	-0.00010851	0.7993	0.0004459	0.60479	0.00033739	557.8622620300919	33.752	0.2407	33.752	33.632	33.873	0					9	4	3	0	0	0	0.027147	1	1582	1582		21.96	7.095	1	44427			30967	12181	25468	25494	34204	34204					0.15715313373698336
LKKGSRTPS	9	Unmodified	_LKKGSRTPS_					0	0	0		nc|ENSG00000091129|Q92823-3|NRCAM;nc|ENSG00000091129|Q92823-4|NRCAM;nc|ENSG00000091129|Q92823-6|NRCAM;ENSG00000091129|ENST00000379028|NRCAM;nc|ENSG00000091129|Q92823-5|NRCAM;ENST00000522550.2_1_7:107790357-107791165:-|nuORF	nc|ENSG00000091129|Q92823-3|NRCAM	nc|ENSG00000091129|Q92823-3|NRCAM	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.780029296875	2	487.293091	972.571629	0.43064	0.00020985	0.10428	5.0815E-05	0.53492	0.00026066	487.29354477362494	72.364	0.67975	69.856	69.433	70.112	-2.5071					18	12	2	0	0	0	0.027462	1	5881	5881		21.96	0	1	23354			30968	1864	25469	25495	34205	34205					0.08424565054417599
LKKHRTLKP	9	Unmodified	_LKKHRTLKP_					0	0	0			REV__PHLDB2|p.E228K|1|0.13|ENSG00000144824|chr3:111884759-111884759|G/A|missense_variant	REV__PHLDB2|p.E228K|1|0.13|ENSG00000144824|chr3:111884759-111884759|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.82861328125	2	560.8693	1119.72405	0.14171	7.9481E-05	-3.6445	-0.0020441	-3.5028	-0.0019646	560.8670212470156	70.427	0.16054	70.427	70.328	70.488	0					5	3	2	0	0	0	0.027462	1	6742	6742		8.6937	0	1	125860	+		30969	29292	25470	25496	34206	34206					0.1689738552183826
LKKHSKVSE	9	Unmodified	_LKKHSKVSE_					0	0	0		tr|A0A7D6VSC4|A0A7D6VSC4_9CLOT4Fe-4SbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05825PE=4SV=1	tr|A0A7D6VSC4|A0A7D6VSC4_9CLOT4Fe-4SbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05825PE=4SV=1	tr|A0A7D6VSC4|A0A7D6VSC4_9CLOT4Fe-4SbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05825PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	528.3155517578125	2	528.314023	1054.61349	-0.36453	-0.00019259	1.2035	0.00063583	0.83897	0.00044324	528.3146420306605	69.411	1.7807	69.411	69.019	70.8	0					71	43	2	0	0	0	0.16562	1	6618	6618		82.241	25.519	1	12833000			30970	35014	25471	25497	34207	34207					0.08837120742964544
LKKIKSAEV	9	Unmodified	_LKKIKSAEV_					0	0	0		tr|A0A553SLG8|A0A553SLG8_NIACIGDSLfamilylipaseOS=NialliacirculansOX=1397GN=CEQ21_20585PE=4SV=1	tr|A0A553SLG8|A0A553SLG8_NIACIGDSLfamilylipaseOS=NialliacirculansOX=1397GN=CEQ21_20585PE=4SV=1	tr|A0A553SLG8|A0A553SLG8_NIACIGDSLfamilylipaseOS=NialliacirculansOX=1397GN=CEQ21_20585PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.2981262207031	2	508.329142	1014.64373	-0.76392	-0.00038832	-0.26322	-0.0001338	-1.0271	-0.00052212	508.32877220489604	40.176	0.30618	37.222	37.062	37.368	-2.9541					7	5	2	0	0	0	0.027462	1	1691	1691		14.137	0	1	5906.2			30971	33720	25472	25498	34208	34208					0.1369947940812608
LKKIPCKTSA	10	Unmodified	_LKKIPCKTSA_					0	0	0		ENSG00000148935|ENST00000454584|GAS2;nc|ENSG00000148935|O43903-2|GAS2	ENSG00000148935|ENST00000454584|GAS2	ENSG00000148935|ENST00000454584|GAS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.8262939453125	2	544.828452	1087.64235	-5.1365	-0.0027985	-1.9002	-0.0010353	-7.0367	-0.0038338	544.8273952320496	155.45	0.90656	153.96	153.69	154.6	-1.4911					53	25	3	0	0	0	0.79917	1	15433	15433		19.104	1.7386	1	111000			30972	5433	25473	25499	34209	34209					0.10203522047731894
LKKIVFFTYL	10	Unmodified	_LKKIVFFTYL_					0	0	0		tr|A0A7D6ZWT0|A0A7D6ZWT0_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20280PE=3SV=1	tr|A0A7D6ZWT0|A0A7D6ZWT0_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20280PE=3SV=1	tr|A0A7D6ZWT0|A0A7D6ZWT0_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20280PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	425.56341552734375	3	424.59692	1270.76893	-1.1536	-0.00048981	-4.0365	-0.0017139	-5.1901	-0.0022037	424.5951498456076	68.179	2.2335	65.527	65.197	67.431	-2.6523					117	44	4	0	0	0	0.027142	1	5526	5526		15.333	4.2363	1	317850			30973	35853	25474	25500	34210	34210					0.14437771544521638
LKKIWYTQR	9	Unmodified	_LKKIWYTQR_					0	0	0		ENST00000371377.3_1_1:54389572-54394098:-|nuORF;ENST00000489675.1_1_1:54387412-54394098:-|nuORF	ENST00000371377.3_1_1:54389572-54394098:-|nuORF	ENST00000371377.3_1_1:54389572-54394098:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	413.240478515625	3	412.580152	1234.71863	2.1408	0.00088324	3.8971	0.0016079	6.0379	0.0024911	412.5817041768591	64.508	1.0604	61.514	61.242	62.303	-2.9933					40	20	3	0	0	0	0.027462	1	2502	2502		24.519	0	1	70951			30974	10953	25475	25501	34211	34211					0.11065661939346683
LKKKEYPSF	9	Unmodified	_LKKKEYPSF_					0	0	0		tr|A0A7D6ZMS4|A0A7D6ZMS4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13270PE=4SV=1	tr|A0A7D6ZMS4|A0A7D6ZMS4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13270PE=4SV=1	tr|A0A7D6ZMS4|A0A7D6ZMS4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13270PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.3603515625	2	570.326599	1138.63865	0.91953	0.00052443	0.55683	0.00031758	1.4764	0.00084201	570.3266109361555	157.22	0.55061	157.22	156.85	157.4	0					16	10	2	0	0	0	0.027462	1	18428	18428		21.96	4.4919	1	40245			30975	35667	25476	25502	34212	34212					0.07487175545520586
LKKKKDCSGSL	11	Unmodified	_LKKKKDCSGSL_					0	0	0		ENST00000288828.8_1_7:5270678-5270732:+|nuORF	ENST00000288828.8_1_7:5270678-5270732:+|nuORF	ENST00000288828.8_1_7:5270678-5270732:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	402.2470703125	3	402.900674	1205.68019	1.1825	0.00047642	-3.2804	-0.0013217	-2.0979	-0.00084524	402.8992185395678	59.322	0.88578	56.542	55.986	56.872	-2.7801					28	16	2	0	0	0	0.02595	1	4333	4333		26.75	8.9166	1	20500			30976	10084	25477	25503	34213	34213					0.08557988242546344
LKKKKDCSGSL	11	Unmodified	_LKKKKDCSGSL_					0	0	0		ENST00000288828.8_1_7:5270678-5270732:+|nuORF	ENST00000288828.8_1_7:5270678-5270732:+|nuORF	ENST00000288828.8_1_7:5270678-5270732:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	402.900674	1205.68019	2.1912	0.00088285	-4.7202	-0.0019018	-2.5289	-0.0010189	402.8986723790282	59.763	1.2298	56.371	56.002	57.232	-3.392	-0.085304	-0.0011407	NaN	26.75	40	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50834			30977	10084	25477	25503							0.08557988242546344
LKKKKNYF	8	Unmodified	_LKKKKNYF_					0	0	0			REV__ENST00000327300.11_1_1:32508467-32508587:+|nuORF	REV__ENST00000327300.11_1_1:32508467-32508587:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.8076782226562	2	534.831852	1067.64915	2.0281	0.0010847	-0.35133	-0.0001879	1.6767	0.00089677	534.8315838810485	115.47	0.47307	115.47	115.25	115.73	0					13	9	2	0	0	0	0.028476	1	13175	13175		19.36	0	1	119530	+		30978	24497	25478	25504	34214	34214					0.11803202990586215
LKKKLHLSNCV	11	Unmodified	_LKKKLHLSNCV_					0	0	0		ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8822021484375	2	641.886832	1281.75911	-4.6434	-0.0029805	-1.9733	-0.0012666	-6.6167	-0.0042472	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.71498	1	15625	15625		24.519	3.5723	1	543390			30979	7759	25479	25505	34215	34215					0.12950260267484737
LKKKLHLSNCV	11	Unmodified	_LKKKLHLSNCV_					0	0	0		ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8824462890625	2	641.886832	1281.75911	-5.3554	-0.0034376	-1.2716	-0.00081624	-6.627	-0.0042538	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.69081	4	13077	13001;13077;13200;13245		32.812	6.1195	1	804890			30980	7759	25479	25505	34216;34217;34218;34219	34217					0.12950260267484737
LKKKLHLSNCV	11	Unmodified	_LKKKLHLSNCV_					0	0	0		ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8821411132812	2	641.886832	1281.75911	-3.6311	-0.0023307	-2.9625	-0.0019016	-6.5935	-0.0042323	641.8847801872174	153.39	4.0845	151.94	150.68	154.77	-1.4516					420	106	6	0	0	0	0.69808	1	15230	15230		30.318	1.1477	1	809780			30981	7759	25479	25505	34220	34220					0.12950260267484737
LKKKLKAI	8	Unmodified	_LKKKLKAI_					0	0	0		nc|ENSG00000144895|Q9BY44-4|EIF2A;ENSG00000144895|ENST00000460851|EIF2A;nc|ENSG00000144895|Q9BY44-2|EIF2A;nc|ENSG00000144895|Q9BY44-3|EIF2A	nc|ENSG00000144895|Q9BY44-4|EIF2A	nc|ENSG00000144895|Q9BY44-4|EIF2A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.3102111816406	2	471.347138	940.679722	0.61495	0.00028986	1.7469	0.00082339	2.3618	0.0011132	471.3481133907354	22.443	0.25225	21.104	21.029	21.281	-1.3386					5	4	2	0	0	0	0.028476	1	282	282		19.36	5.5846	1	8211.5			30982	5192	25480	25506	34221	34221					0.20700981375637184
LKKKREKN	8	Unmodified	_LKKKREKN_					0	0	0		L1P3_dup682|chr3:196908842-196910335:+|1.1693758815815145|0.2885488685750818|2.02|428.0|32|3|sense	L1P3_dup682|chr3:196908842-196910335:+|1.1693758815815145|0.2885488685750818|2.02|428.0|32|3|sense	L1P3_dup682|chr3:196908842-196910335:+|1.1693758815815145|0.2885488685750818|2.02|428.0|32|3|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	522.3353881835938	2	522.337833	1042.66111	0.28181	0.0001472	-4.4118	-0.0023045	-4.13	-0.0021573	522.3353398123396	140.29	0.86009	140.29	140.02	140.88	0					29	17	2	0	0	0	0.71267	1	16383	16383		40.778	0	1	81340			30983	14642	25481	25507	34222	34222					0.14148819733804885
LKKKRYPD	8	Unmodified	_LKKKRYPD_					0	0	0			REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7696533203125	2	524.319109	1046.62366	-0.85561	-0.00044861	1.1089	0.00058144	0.25334	0.00013283	524.3194292688988	69.586	0.32307	69.586	69.475	69.798	0					12	7	2	0	0	0	0.028476	1	6650	6650		12.207	0	1	445650	+		30984	18532	25482	25508	34223	34223					0.10221728468172842
LKKKSLSFQ	9	Unmodified	_LKKKSLSFQ_					0	0	0		ENST00000466041.1_1_7:55495935-55499010:+|nuORF	ENST00000466041.1_1_7:55495935-55499010:+|nuORF	ENST00000466041.1_1_7:55495935-55499010:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	539.8323364257812	2	539.834591	1077.65463	-3.7173	-0.0020067	-0.65874	-0.00035561	-4.3761	-0.0023624	539.83416939196	149.54	1.4287	149.32	148.92	150.35	-0.22697					60	28	3	0	0	0	0.61208	1	15149	15149		30.504	0	1	108190			30985	12280	25483	25509	34224	34224					0.11890881782414908
LKKKSQACTE	10	Unmodified	_LKKKSQACTE_					0	0	0			REV__tr|A0A553SRS1|A0A553SRS1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01515PE=4SV=1	REV__tr|A0A553SRS1|A0A553SRS1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01515PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.8467407226562	2	568.310623	1134.60669	-0.31285	-0.0001778	-1.123	-0.00063822	-1.4359	-0.00081602	568.3102384340278	60.004	0.35133	60.004	59.802	60.153	0					13	8	2	0	0	0	0.026849	1	5226	5226		40.778	9.2484	1	173040	+		30986	30759	25484	25510	34225	34225					0.044774398000754445
LKKKTPGVQS	10	Unmodified	_LKKKTPGVQS_					0	0	0		ENSG00000257446|ENST00000547628|ZNF878	ENSG00000257446|ENST00000547628|ZNF878	ENSG00000257446|ENST00000547628|ZNF878	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8192138671875	2	543.337498	1084.66044	-0.097713	-5.3091E-05	0.10846	5.8929E-05	0.010745	5.8382E-06	543.3374474100686	71.045	1.2054	71.045	70.839	72.045	0					73	29	4	0	0	0	0.027001	1	6942	6942		16.007	0	1	6713000			30987	9473	25485	25511	34226	34226					0.12149980294088891
LKKLAGKPPN	10	Unmodified	_LKKLAGKPPN_					0	0	0			REV__ENSG00000150527|ENST00000640607|MIA2	REV__ENSG00000150527|ENST00000640607|MIA2	MULTI-MSMS	OvCa9_classI_Rep3	3	533.33984375	2	533.342584	1064.67061	-5.4486	-0.002906	1.332	0.00071043	-4.1166	-0.0021955	533.3431726379797	156.49	1.098	155.32	155.02	156.12	-1.1707					66	21	4	0	0	0	0.78463	1	13448	13448		20.947	2.6225	1	385900	+		30988	20192	25486	25512	34227	34227					0.1408658801931324
LKKLESRR	8	Unmodified	_LKKLESRR_					0	0	0		nc|ENSG00000110074|Q96CU9-3|FOXRED1;ENSG00000110074|ENST00000263578|FOXRED1;ENST00000529802.1_1_11:126139101-126141609:+|nuORF;ENST00000534315.5_1_11:126141345-126145243:+|nuORF	nc|ENSG00000110074|Q96CU9-3|FOXRED1	nc|ENSG00000110074|Q96CU9-3|FOXRED1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.3096923828125	2	515.330008	1028.64546	-0.7993	-0.00041191	1.0022	0.00051646	0.20288	0.00010455	515.3311747355782	99.393	0.51842	97.067	96.899	97.417	-2.3253					14	9	2	0	0	0	0.028476	1	8901	8901		31.955	5.1588	1	11022			30989	2753	25487	25513	34228	34228					0.1322853321673847
LKKLGLHVGD	10	Unmodified	_LKKLGLHVGD_					0	0	0		tr|A0A553SRC2|A0A553SRC2_NIACIDUF1284domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00625PE=4SV=1	tr|A0A553SRC2|A0A553SRC2_NIACIDUF1284domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00625PE=4SV=1	tr|A0A553SRC2|A0A553SRC2_NIACIDUF1284domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00625PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3309936523438	2	540.332216	1078.64988	-7.0849	-0.0038282	3.2444	0.0017531	-3.8405	-0.0020751	540.3339144529704	160.11	0.74295	158.5	158.24	158.98	-1.6101					38	17	3	0	0	0	0.82648	1	15812	15812		15.642	0.77694	1	51162			30990	34249	25488	25514	34229	34229					0.11369997639667417
LKKLHYTL	8	Unmodified	_LKKLHYTL_					0	0	0		ENSG00000177602|ENST00000325418|HASPIN	ENSG00000177602|ENST00000325418|HASPIN	ENSG00000177602|ENST00000325418|HASPIN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.2981262207031	2	508.318577	1014.6226	-0.54497	-0.00027702	-4.1453	-0.0021071	-4.6903	-0.0023842	508.3163371584557	39.694	0.79609	36.739	36.467	37.263	-2.9541					29	15	2	0	0	0	0.028476	1	1691	1691		18.324	5.3652	1	64639			30991	7698	25489	25515	34230	34230					0.11587514099278451
LKKLHYTL	8	Unmodified	_LKKLHYTL_					0	0	0		ENSG00000177602|ENST00000325418|HASPIN	ENSG00000177602|ENST00000325418|HASPIN	ENSG00000177602|ENST00000325418|HASPIN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	508.318577	1014.6226	-1.0546	-0.00053607	-3.0353	-0.0015429	-4.0899	-0.002079	508.31679924831093	39.243	0.54359	36.533	36.36	36.904	-2.7097	-0.10308	0.00092362	NaN	18.324	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21856			30992	7698	25489	25515							0.11587514099278451
LKKLKKRA	8	Unmodified	_LKKLKKRA_					0	0	0			REV__ENST00000558438.1_1_15:99688849-99696475:-|nuORF	REV__ENST00000558438.1_1_15:99688849-99696475:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.800048828125	2	492.855661	983.69677	-0.1206	-5.9439E-05	-2.5851	-0.0012741	-2.7057	-0.0013335	492.8538505199177	60.118	0.31517	57.348	57.238	57.553	-2.7702					7	5	2	0	0	0	0.028476	1	4419	4419		12.959	0	1	5128.2	+		30993	27586	25490	25516	34231	34231					0.2042690198144328
LKKLKPNHTK	10	Unmodified	_LKKLKPNHTK_					0	0	0		ENSG00000272636|ENST00000613549|DOC2B	ENSG00000272636|ENST00000613549|DOC2B	ENSG00000272636|ENST00000613549|DOC2B	MULTI-MSMS	OvCa99_classI_Rep5	1	603.8897705078125	2	603.88769	1205.76083	2.7018	0.0016316	-1.0378	-0.00062672	1.664	0.0010048	603.8873042583225	89.105	0.96055	89.105	88.803	89.763	0					71	23	4	0	0	0	0.58067	1	9480	9480		44.377	2.9506	1	3757800			30994	9553	25491	25517	34232	34232					0.1661763734773558
LKKLLAQKLP	10	Unmodified	_LKKLLAQKLP_					0	0	0			REV__ENST00000481328.7_1_11:76905078-76923312:+|nuORF	REV__ENST00000481328.7_1_11:76905078-76923312:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	576.3549194335938	2	576.397359	1150.78016	-1.6976	-0.00097848	-3.2102	-0.0018504	-4.9078	-0.0028288	576.3955830084851	73.03	0.1933	69.634	69.543	69.736	-3.3961					6	3	2	0	0	0	0.026665	1	5635	5635		14.137	0	1	26254	+		30995	26476	25492	25518	34233	34233					0.21080593638635037
LKKLPSKVLDD	11	Unmodified	_LKKLPSKVLDD_					0	0	0		ENSG00000128849|ENST00000281282|CGNL1;nc|ENSG00000128849|Q0VF96-2|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	MSMS	OvCa9_classI_Rep4_	4	628.383056640625	2	628.384645	1254.75474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	150.8	1	149.37	148.87	149.87	-1.4344								0	0	0	0.19474	1	14901	14901		21.686	4.2177	1				30996	3908	25493	25519	34234	34234					0.1375507432555878
LKKLPVHKF	9	Unmodified	_LKKLPVHKF_					0	0	0		nc|ENSG00000082996|O43567-2|RNF13;ENSG00000082996|ENST00000392894|RNF13	nc|ENSG00000082996|O43567-2|RNF13	nc|ENSG00000082996|O43567-2|RNF13	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.3291625976562	2	555.363319	1108.71209	2.4304	0.0013498	4.4143	0.0024516	6.8447	0.0038013	555.3657596892217	95.067	0.16972	95.067	94.992	95.161	0					6	3	2	0	0	0	0.027462	1	10360	10360		7.6903	4.2803	1	93398			30997	1686	25494	25520	34235	34235					0.16207768778645004
LKKLREREQEL	11	Unmodified	_LKKLREREQEL_					0	0	0			REV__ENSG00000118407|ENST00000237172|FILIP1	REV__ENSG00000118407|ENST00000237172|FILIP1	MULTI-MSMS	OvCa9_classI_Rep3	3	481.28228759765625	3	481.287697	1440.84126	-6.6786	-0.0032143	-1.9719	-0.00094904	-8.6505	-0.0041634	481.2868612614486	161.01	3.7232	159.65	158.49	162.21	-1.3523					206	77	3	0	0	0	0.70587	1	13926	13926		27.644	9.8108	1	127690	+		30998	18394	25495	25521	34236	34236					0.13847453880134708
LKKMFVKAFV	10	Unmodified	_LKKMFVKAFV_					0	0	0			REV__ENST00000481528.1_1_1:52926763-52927313:-|nuORF	REV__ENST00000481528.1_1_1:52926763-52927313:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	605.870849609375	2	605.872662	1209.73077	-4.4328	-0.0026857	3.3119	0.0020066	-1.1209	-0.00067912	605.8745511795182	157.17	1.2501	156	155.65	156.91	-1.1707					83	31	4	0	0	0	0.76627	1	13563	13563		23.042	1.3567	1	204530	+		30999	26480	25496	25522	34237	34237					0.13429562358192015
LKKMIHIG	8	Unmodified	_LKKMIHIG_					0	0	0			REV__nc|ENSG00000119661|Q4LDG9-3|DNAL1	REV__nc|ENSG00000119661|Q4LDG9-3|DNAL1	MULTI-MSMS	OvCa9_classI_Rep2	2	470.2957458496094	2	470.294048	938.573543	-0.49251	-0.00023162	4.034	0.0018972	3.5415	0.0016655	470.29591238963496	32.315	1.7376	29.606	29.382	31.119	-2.7097					90	34	5	0	0	0	0.74679	1	1053	1053		28.254	5.2118	1	1326000	+		31000	18456	25497	25523	34238	34238					0.10179902538675378
LKKMKKKL	8	Unmodified	_LKKMKKKL_					0	0	0		chr1:62437400-62439989|103|10.57|0.18|5.85|+|0|USP1,None|1	chr1:62437400-62439989|103|10.57|0.18|5.85|+|0|USP1,None|1	chr1:62437400-62439989|103|10.57|0.18|5.85|+|0|USP1,None|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7546081542969	2	508.854273	1015.69399	0.33247	0.00016918	-3.6307	-0.0018475	-3.2983	-0.0016783	508.8524673160255	71.978	0.33742	71.978	71.707	72.045	0					10	7	2	0	0	0	0.028476	1	6985	6985		55.504	0	1	177850			31001	264	25498	25524	34239	34239					0.18677310532291358
LKKMMMMKSSM	11	Unmodified	_LKKMMMMKSSM_					0	0	0			REV__ENST00000400020.7_1_18:9254346-9254388:+|nuORF	REV__ENST00000400020.7_1_18:9254346-9254388:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	449.7543029785156	3	449.222609	1344.646	-0.56232	-0.00025261	3.2256	0.001449	2.6633	0.0011964	449.22308101140493	44.76	0.66463	41.721	41.514	42.178	-3.0385					18	12	3	0	0	0	0.025988	1	2266	2266		32.034	13.772	1	12641	+		31002	25397	25499	25525	34240	34240					-0.012539588282379555
LKKNKIFGT	9	Unmodified	_LKKNKIFGT_					0	0	0			REV__tr|A0A7D6ZPF0|A0A7D6ZPF0_9CLOTTripletyrosinemotif-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20015PE=4SV=1	REV__tr|A0A7D6ZPF0|A0A7D6ZPF0_9CLOTTripletyrosinemotif-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20015PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	524.8268432617188	2	524.829309	1047.64407	-4.3888	-0.0023034	0.2202	0.00011557	-4.1686	-0.0021878	524.8292785030237	156.45	1.4045	156.23	155.89	157.3	-0.22696					98	36	4	0	0	0	0.67509	1	15944	15944		23.042	3.6825	1	556080	+		31003	32134	25500	25526	34241	34241					0.12214899127980061
LKKNLKQL	8	Unmodified	_LKKNLKQL_					0	0	0			REV__ENST00000557026.5_1_14:75551269-75572727:-|nuORF	REV__ENST00000557026.5_1_14:75551269-75572727:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	492.79547119140625	2	492.831852	983.649151	-0.49199	-0.00024247	-0.077984	-3.8433E-05	-0.56998	-0.0002809	492.83174346884266	73.934	1.0389	71.446	71.175	72.214	-2.4873					32	20	2	0	0	0	0.028476	1	3704	3704		68.485	0	1	52851	+		31004	18455	25501	25527	34242	34242					0.15667202990584883
LKKNLKQL	8	Unmodified	_LKKNLKQL_					0	0	0			REV__ENST00000557026.5_1_14:75551269-75572727:-|nuORF	REV__ENST00000557026.5_1_14:75551269-75572727:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	492.831852	983.649151	0.18487	9.1112E-05	-0.80809	-0.00039825	-0.62322	-0.00030714	492.83137117683924	73.79	0.68433	71.391	71.106	71.79	-2.3999	-0.027863	-0.00056413	NaN	68.485	21	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32260	+		31005	18455	25501	25527							0.15667202990584883
LKKPQSRLQL	10	Unmodified	_LKKPQSRLQL_					0	0	0			REV__VWA3A|p.L778Afs*11|2|0.13|ENSG00000175267|chr16:22140185-22140186|-/C|frameshift_variant	REV__VWA3A|p.L778Afs*11|2|0.13|ENSG00000175267|chr16:22140185-22140186|-/C|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.22454833984375	3	404.25919	1209.75574	0.84169	0.00034026	-0.57042	-0.0002306	0.27127	0.00010966	404.2590045770064	33.657	0.24319	33.657	33.533	33.776	0					6	4	2	0	0	0	0.026803	1	1552	1552		14.694	0	1	14948	+		31006	21886	25502	25528	34243	34243					0.15925333485120063
LKKPRSELV	9	Unmodified	_LKKPRSELV_					0	0	0		ENST00000572438.1_1_17:4802033-4804946:-|nuORF;ENSG00000108556|ENST00000649488|CHRNE	ENST00000572438.1_1_17:4802033-4804946:-|nuORF	ENST00000572438.1_1_17:4802033-4804946:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	535.339599609375	2	535.340041	1068.66553	-1.5363	-0.00082246	1.039	0.00055624	-0.49729	-0.00026622	535.3405413095446	47.805	1.5411	45.095	44.588	46.129	-2.7097					85	30	4	0	0	0	0.63422	1	2963	2963		27.882	1.1893	1	476770			31007	2661	25503	25529	34244	34244					0.13394284156697722
LKKQFLGALL	10	Unmodified	_LKKQFLGALL_					0	0	0			REV__nc|ENSG00000179583|P33076|CIITA	REV__nc|ENSG00000179583|P33076|CIITA	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.8882446289062	2	565.868434	1129.72232	2.3059	0.0013048	-0.9534	-0.0005395	1.3525	0.00076534	565.8670364441236	117.8	0.60167	117.8	117.56	118.16	0					15	12	2	0	0	0	0.027021	1	13489	13489		29.15	5.6269	1	44463	+		31008	22129	25504	25530	34245	34245					0.16264331713227875
LKKQGETPN	9	Unmodified	_LKKQGETPN_					0	0	0		ENSG00000154359|ENST00000398246|LONRF1	ENSG00000154359|ENST00000398246|LONRF1	ENSG00000154359|ENST00000398246|LONRF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.3288879394531	2	507.782556	1013.55056	-0.32863	-0.00016687	-0.68919	-0.00034996	-1.0178	-0.00051683	507.78236172319725	50.921	0.39051	50.921	50.73	51.12	0					28	8	5	0	0	0	0.027441	1	3894	3894		40.778	0	1	1041800			31009	5732	25505	25531	34246	34246					0.044325549548943854
LKKQIADAR	9	Unmodified	_LKKQIADAR_					0	0	0		nc|ENSG00000111664|P16520-2|GNB3;ENSG00000111664|ENST00000229264|GNB3	nc|ENSG00000111664|P16520-2|GNB3	nc|ENSG00000111664|P16520-2|GNB3	MSMS	OvCa99_classI_Rep5	1	521.824951171875	2	521.822015	1041.62948	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.127	1	77.127	76.627	77.627	0								0	0	0	0.17776	1	7764	7764		37.812	0.65241	1				31010	2839	25506	25532	34247	34247					0.110328269798174
LKKQIGLCV	9	Unmodified	_LKKQIGLCV_					0	0	0		ENST00000487535.5_1_22:42177357-42177537:+|nuORF	ENST00000487535.5_1_22:42177357-42177537:+|nuORF	ENST00000487535.5_1_22:42177357-42177537:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.785888671875	2	501.312438	1000.61032	1.7179	0.0008612	-3.0067	-0.0015073	-1.2888	-0.00064612	501.3106922295436	117.13	0.55546	117.13	116.91	117.46	0					18	11	2	0	0	0	0.027462	1	13421	13421		30.504	7.4612	1	54720			31011	12647	25507	25533	34248	34248					0.11004154364582064
LKKRGFIDAL	10	Unmodified	_LKKRGFIDAL_					0	0	0			REV__tr|A0A7D6ZH49|A0A7D6ZH49_9CLOTDHA2familyeffluxMFStransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_01470PE=3SV=1	REV__tr|A0A7D6ZH49|A0A7D6ZH49_9CLOTDHA2familyeffluxMFStransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_01470PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	580.8634033203125	2	580.861141	1159.70773	0.072108	4.1884E-05	0.42709	0.00024808	0.49919	0.00028996	580.8612732647885	74.026	1.165	74.026	73.755	74.92	0					70	29	3	0	0	0	0.55359	1	7320	7320		47.657	10.498	1	5544800	+		31012	32016	25508	25534	34249	34249					0.13426259565085275
LKKRISNI	8	Unmodified	_LKKRISNI_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;CACNA1D-DNAH1|1|fusion;ENST00000488988.5_1_3:52422617-52433783:+|nuORF;ENST00000486752.5_1_3:52422617-52434459:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.30462646484375	2	486.321651	970.62875	0.87956	0.00042775	4.3662	0.0021234	5.2458	0.0025511	486.32355536507794	126.25	0.5246	125.18	125.02	125.55	-1.0715					11	9	2	0	0	0	0.028476	1	9868	9868		44.117	0	1	14171			31013	3045	25509	25535	34250	34250					0.14226032330782346
LKKRQAPVQQS	11	Unmodified	_LKKRQAPVQQS_					0	0	0			REV__nc|ENSG00000134278|Q08AE8-5|SPIRE1	REV__nc|ENSG00000134278|Q08AE8-5|SPIRE1	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8828735351562	2	641.883136	1281.75172	-3.6311	-0.0023307	2.7968	0.0017952	-0.8343	-0.00053552	641.8847801872174	153.39	4.0845	151.94	150.68	154.77	-1.4516					420	106	6	0	0	0	0.70761	1	15121	15121		27.047	3.5246	1	809780	+		31014	19190	25510	25536	34251	34251					0.12211243991396259
LKKRVVQV	8	Unmodified	_LKKRVVQV_					0	0	0		ZFHX4|p.S2870Mfs*29|1|0.03|ENSG00000091656|chr8:76855527-76855545|CAAGCCCATCCATCCATTT/-|frameshift_variant;nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ENSG00000091656|ENST00000651372|ZFHX4;ENSG00000136367|ENST00000419474|ZFHX2;ENSG00000140836|ENST00000268489|ZFHX3;nc|ENSG00000140836|Q15911-2|ZFHX3	ZFHX4|p.S2870Mfs*29|1|0.03|ENSG00000091656|chr8:76855527-76855545|CAAGCCCATCCATCCATTT/-|frameshift_variant;ENSG00000136367|ENST00000419474|ZFHX2;ENSG00000140836|ENST00000268489|ZFHX3	ZFHX4|p.S2870Mfs*29|1|0.03|ENSG00000091656|chr8:76855527-76855545|CAAGCCCATCCATCCATTT/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.79217529296875	2	485.332019	968.649485	-0.70441	-0.00034187	2.1169	0.0010274	1.4125	0.00068554	485.33298054211144	69.7	0.36993	69.7	69.513	69.883	0					10	8	2	0	0	0	0.028476	1	6658	6658		33.516	0	1	126090			31015	1875;4876;4484	25511	25537	34252	34252					0.1639062271046896
LKKSAALAPQ	10	Unmodified	_LKKSAALAPQ_					0	0	0		tr|A0A7D7A195|A0A7D7A195_9CLOTFAD:proteinFMNtransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03035PE=3SV=1	tr|A0A7D7A195|A0A7D7A195_9CLOTFAD:proteinFMNtransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03035PE=3SV=1	tr|A0A7D7A195|A0A7D7A195_9CLOTFAD:proteinFMNtransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03035PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.7999877929688	2	513.818941	1025.62333	0.27494	0.00014127	-0.91249	-0.00046885	-0.63754	-0.00032758	513.8182638160843	46.002	0.22226	46.002	45.89	46.112	0					6	4	2	0	0	0	0.026826	1	3209	3209		29.17	8.2231	1	132020			31016	36031	25512	25538	34253	34253					0.11154308748314179
LKKTSEEDIPV	11	Unmodified	_LKKTSEEDIPV_					0	0	0			REV__tr|A0A7D7ABP1|A0A7D7ABP1_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16140PE=4SV=1	REV__tr|A0A7D7ABP1|A0A7D7ABP1_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16140PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	629.8504028320312	2	629.848093	1257.68163	-0.76347	-0.00048087	2.0875	0.0013148	1.324	0.00083395	629.8490645395771	92.583	1.5683	90.068	89.595	91.163	-2.5147					91	31	4	0	0	0	0.54114	1	8059	8059		19.104	0	1	1025100	+		31017	32678	25513	25539	34254	34254					0.06309900812266278
LKKTVLSAM	9	Unmodified	_LKKTVLSAM_					0	0	0		ENST00000323646.9_1_11:63342359-63342416:-|nuORF	ENST00000323646.9_1_11:63342359-63342416:-|nuORF	ENST00000323646.9_1_11:63342359-63342416:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.80706787109375	2	495.804445	989.594338	-0.52816	-0.00026187	4.0692	0.0020175	3.541	0.0017557	495.80638684951504	144.26	1.4618	142.83	142.48	143.94	-1.4357					68	27	4	0	0	0	0.53957	1	14151	14151		38.806	3.6054	1	117760			31018	10391	25514	25540	34255	34255					0.09912448127670359
LKKVANQII	9	Unmodified	_LKKVANQII_					0	0	0			REV__tr|A0A7D6ZH96|A0A7D6ZH96_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_22110PE=4SV=1	REV__tr|A0A7D6ZH96|A0A7D6ZH96_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_22110PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	513.837890625	2	513.837134	1025.65972	1.2318	0.00063296	0.14103	7.2466E-05	1.3729	0.00070543	513.8372122853037	111.58	4.0537	111.58	111.2	115.25	0					218	90	6	0	0	0	0.11171	1	12786	12786		94.006	5.3636	1	29115000	+		31019	32019	25515	25541	34256	34256					0.14791185645026417
LKKVEKHR	8	Unmodified	_LKKVEKHR_					0	0	0			REV__ENSG00000120699|ENST00000389704|EXOSC8	REV__ENSG00000120699|ENST00000389704|EXOSC8	MULTI-MSMS	OvCa9_classI_Rep3	3	519.3327026367188	2	519.33255	1036.65055	0.67622	0.00035118	-1.2042	-0.00062537	-0.52796	-0.00027419	519.3318594599918	71.111	1.2027	68.392	68.008	69.211	-2.7196					78	23	4	0	0	0	0.73494	1	3282	3282		34.173	2.6427	1	1378400	+		31020	18511	25516	25542	34257	34257					0.13368837079360674
LKKVFRPP	8	Unmodified	_LKKVFRPP_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.8000793457031	2	492.821287	983.628021	-0.086475	-4.2617E-05	2.3029	0.0011349	2.2164	0.0010923	492.82239753832084	60.192	0.3674	57.422	57.133	57.501	-2.7702					10	6	2	0	0	0	0.028476	1	4425	4425		33.516	14.156	1	22307	+		31021	28942;32737	25517	25543	34258	34258					0.13555237681748622
LKKVRGKV	8	Unmodified	_LKKVRGKV_					0	0	0		nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-2|OGT	nc|ENSG00000147162|O15294-2|OGT	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.2841796875	2	464.326737	926.63892	-0.48588	-0.00022561	-2.9877	-0.0013873	-3.4735	-0.0016129	464.3251920197125	94.779	0.14577	93.679	93.558	93.703	-1.0995					4	2	2	0	0	0	0.028476	1	8493	8493		25.45	4.9683	1	6606.7			31022	5337	25518	25544	34259	34259					0.17266640056038796
LKKVYGTEP	9	Unmodified	_LKKVYGTEP_					0	0	0			REV__ENSG00000197889|ENST00000407572|MEIG1	REV__ENSG00000197889|ENST00000407572|MEIG1	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.7523803710938	2	517.797675	1033.5808	-0.40195	-0.00020813	1.8741	0.00097038	1.4721	0.00076226	517.7974178326749	98.925	0.74705	98.032	97.857	98.604	-0.89305					18	14	2	0	0	0	0.027426	1	8995	8995		31.53	0	1	15233	+		31023	22961	25519	25545	34260	34260					0.06534913620089355
LKKWKIFK	8	Unmodified	_LKKWKIFK_					0	0	0		tr|A0A553SG29|A0A553SG29_NIACIFormate/nitritetransporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10005PE=3SV=1	tr|A0A553SG29|A0A553SG29_NIACIFormate/nitritetransporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10005PE=3SV=1	tr|A0A553SG29|A0A553SG29_NIACIFormate/nitritetransporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10005PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.7902221679688	2	545.860412	1089.70627	-0.1559	-8.5102E-05	3.1184	0.0017022	2.9625	0.0016171	545.8616787961903	30.674	0.19918	30.674	30.532	30.731	0					5	3	2	0	0	0	0.028476	1	1204	1204		13.775	4.953	1	8906.5			31024	33112	25520	25546	34261	34261					0.16500670266964335
LKKYGIPFDK	10	Unmodified	_LKKYGIPFDK_					0	0	0		KDM4A|p.S510Ifs*2|1|0.07|ENSG00000066135|chr1:43671668-43671669|-/A|frameshift_variant;KDM4A|p.S510Qfs*4|1|0.07|ENSG00000066135|chr1:43671665-43671666|-/AGCCAGG|frameshift_variant;KDM4A|p.S510Hfs*85|1|0.05|ENSG00000066135|chr1:43671666-43671667|-/CCCATTCCCCGCCCATGTTC|frameshift_variant;KDM4A|p.R605Pfs*13|1|0.12|ENSG00000066135|chr1:43683757-43683758|-/C|frameshift_variant;ENSG00000066135|ENST00000372396|KDM4A;PCCB-KDM4A|1|fusion;PCCB-KDM4A|2|fusion;ENST00000489243.5_1_9:6758133-6893415:+|nuORF;nc|ENSG00000293552|Q9H3R0-3|KDM4C;nc|ENSG00000293552|Q9H3R0-4|KDM4C;KDM4C-GMPS|1|fusion;KDM4C-GMPS|2|fusion;ENSG00000107077|ENST00000381309|KDM4C;nc|ENSG00000293552|Q9H3R0-2|KDM4C	KDM4A|p.S510Ifs*2|1|0.07|ENSG00000066135|chr1:43671668-43671669|-/A|frameshift_variant;KDM4C-GMPS|1|fusion;ENSG00000107077|ENST00000381309|KDM4C	KDM4C-GMPS|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	404.57086181640625	3	403.572775	1207.69649	0.44246	0.00017857	-4.1341	-0.0016684	-3.6917	-0.0014899	403.57082662328116	49.902	1.6833	47.107	46.341	48.024	-2.794					49	33	2	0	0	0	0.02689	1	3187	3187		33.039	26.38	1	57960			31025	14520;1345;2584	25521	25547	34262	34262					0.10095437470931756
LKKYLDVKL	9	Unmodified	_LKKYLDVKL_					0	0	0		ENST00000354336.7_1_22:21306938-21307133:+|nuORF	ENST00000354336.7_1_22:21306938-21307133:+|nuORF	ENST00000354336.7_1_22:21306938-21307133:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	559.7968139648438	2	560.360442	1118.70633	-1.3731	-0.00076943	0.90391	0.00050652	-0.46919	-0.00026291	560.3608733953677	83.876	0.776	81.615	81.434	82.21	-2.261					29	16	2	0	0	0	0.027452	1	4878	4878		58.23	31.434	1	59529			31026	10662	25522	25548	34263	34263					0.1517262547631617
LKKYLDVKL	9	Unmodified	_LKKYLDVKL_					0	0	0		ENST00000354336.7_1_22:21306938-21307133:+|nuORF	ENST00000354336.7_1_22:21306938-21307133:+|nuORF	ENST00000354336.7_1_22:21306938-21307133:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	560.360442	1118.70633	0.48655	0.00027264	-0.77579	-0.00043472	-0.28924	-0.00016208	560.3598717987877	83.036	0.95497	81.438	81.115	82.07	-1.5988	-0.06338	-0.00085415	NaN	58.23	24	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43337			31027	10662	25522	25548							0.1517262547631617
LKKYLDVKL	9	Unmodified	_LKKYLDVKL_					0	0	0		ENST00000354336.7_1_22:21306938-21307133:+|nuORF	ENST00000354336.7_1_22:21306938-21307133:+|nuORF	ENST00000354336.7_1_22:21306938-21307133:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	560.360442	1118.70633	1.5343	0.00085978	-1.6462	-0.00092249	-0.11191	-6.271E-05	560.3593851960978	84.114	0.60909	81.451	81.167	81.776	-2.6629	-0.05027	-0.0018297	NaN	58.23	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48844			31028	10662	25522	25548							0.1517262547631617
LKLAEESIVL	10	Unmodified	_LKLAEESIVL_					0	0	0		tr|A0A7D6VWB6|A0A7D6VWB6_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=bglXPE=3SV=1	tr|A0A7D6VWB6|A0A7D6VWB6_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=bglXPE=3SV=1	tr|A0A7D6VWB6|A0A7D6VWB6_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=bglXPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	557.8407592773438	2	557.839539	1113.66453	2.46	0.0013723	-0.38487	-0.0002147	2.0751	0.0011576	557.8392170418192	108.4	1.2125	108.4	108.03	109.24	0					58	27	3	0	0	0	0.49558	1	12271	12271		54.776	7.119	1	2011200			31029	35245	25523	25549	34264	34264					0.11224024997136439
LKLCAQGV	8	Unmodified	_LKLCAQGV_					0	0	0			REV__nc|ENSG00000125498|P43626-2|KIR2DL1	REV__nc|ENSG00000125498|P43626-2|KIR2DL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.7403564453125	2	416.241481	830.468409	-0.17811	-7.4136E-05	1.402	0.00058356	1.2239	0.00050943	416.24203267755587	42.042	0.68825	42.042	41.724	42.412	0					31	15	3	0	0	0	0.028476	1	2676	2676		25.45	0	1	209390	+		31030	28832	25524	25550	34265	34265					0.04639361342253778
LKLDRIIHW	9	Unmodified	_LKLDRIIHW_					0	0	0		ENSG00000226479|ENST00000426077|TMEM185B	ENSG00000226479|ENST00000426077|TMEM185B	ENSG00000226479|ENST00000426077|TMEM185B	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.3584594726562	2	597.361308	1192.70806	-4.9941	-0.0029833	0.34798	0.00020787	-4.6461	-0.0027754	597.361356414137	157.6	0.96988	156.05	155.73	156.7	-1.545					62	25	3	0	0	0	0.6653	1	15567	15567		24.203	3.2558	1	81979			31031	9271	25525	25551	34266	34266					0.11941679284950624
LKLEDIIQ	8	Unmodified	_LKLEDIIQ_					0	0	0		ENSG00000113319|ENST00000265080|RASGRF2	ENSG00000113319|ENST00000265080|RASGRF2	ENSG00000113319|ENST00000265080|RASGRF2	MULTI-MSMS	OvCa99_classI_Rep5	1	486.2936706542969	2	486.292225	970.569897	1.9193	0.00093333	0.56997	0.00027717	2.4893	0.0012105	486.2923209509544	96.77	0.59099	96.77	96.459	97.05	0					28	13	3	0	0	0	0.4531	1	10604	10604		82.241	0	1	1610000			31032	2965	25526	25552	34267	34267					0.08343511245811897
LKLEHCPQA	9	Unmodified	_LKLEHCPQA_					0	0	0		ENSG00000106009|ENST00000340611|BRAT1;ENST00000467558.5_1_7:2580597-2582974:-|nuORF	ENSG00000106009|ENST00000340611|BRAT1	ENSG00000106009|ENST00000340611|BRAT1	MULTI-MSMS	OvCa9_classI_Rep2	2	519.7742919921875	2	519.773677	1037.5328	1.2718	0.00066103	-0.71745	-0.00037291	0.55432	0.00028812	519.7732287380198	127.54	1.531	127.31	126.99	128.52	-0.23578					82	30	5	0	0	0	0.37135	1	12504	12504		54.776	12.38	1	538520			31033	2522	25527	25553	34268	34268					0.015535164283846825
LKLELTLSH	9	Unmodified	_LKLELTLSH_					0	0	0			REV__tr|A0A553SRD3|A0A553SRD3_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00835PE=4SV=1	REV__tr|A0A553SRD3|A0A553SRD3_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00835PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	527.3216552734375	2	527.318774	1052.623	-1.2258	-0.00064638	1.4123	0.00074474	0.18652	9.8358E-05	527.319431010988	100.45	0.64418	99.617	99.113	99.757	-0.83051					21	12	2	0	0	0	0.22621	1	9175	9175		71.877	2.2498	1	224170	+		31034	30723	25528	25554	34269	34269					0.09878889028482263
LKLESHSIT	9	Unmodified	_LKLESHSIT_					0	0	0		ENSG00000126814|ENST00000261249|TRMT5	ENSG00000126814|ENST00000261249|TRMT5	ENSG00000126814|ENST00000261249|TRMT5	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.8250732421875	2	514.292756	1026.57096	-0.40511	-0.00020834	2.0214	0.0010396	1.6162	0.00083122	514.29402768588	77.143	0.57326	75.354	74.946	75.519	-1.7894					14	10	2	0	0	0	0.027462	1	6415	6415		29.15	0	1	7189.3			31035	3802	25529	25555	34270	34270					0.058737256147196604
LKLFEILKK	9	Unmodified	_LKLFEILKK_					0	0	0		nc|ENSG00000185418|A2RTX5-2|TARS3;ENSG00000185418|ENST00000335968|TARS3	nc|ENSG00000185418|A2RTX5-2|TARS3	nc|ENSG00000185418|A2RTX5-2|TARS3	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.2808837890625	2	566.378635	1130.74272	2.4132	0.0013668	-0.81382	-0.00046093	1.5994	0.00090585	566.378100758995	110.6	0.62563	110.6	110.35	110.98	0					23	13	2	0	0	0	0.027462	1	12577	12577		42.396	9.5837	1	126040			31036	8253	25530	25556	34271	34271					0.18257502373035095
LKLFIALTFA	10	Unmodified	_LKLFIALTFA_					0	0	0			REV__tr|A0A7D6VRP6|A0A7D6VRP6_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07750PE=4SV=1	REV__tr|A0A7D6VRP6|A0A7D6VRP6_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07750PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	568.8533325195312	2	568.857535	1135.70052	-5.375	-0.0030576	-1.5179	-0.00086345	-6.8929	-0.0039211	568.8565433281535	160.72	1.3933	160.5	160.18	161.57	-0.22696					89	27	5	0	0	0	0.7759	1	16395	16395		21.96	1.013	1	747650	+		31037	31431	25531	25557	34272	34272					0.13809526964632823
LKLFKELSI	9	Unmodified	_LKLFKELSI_					0	0	0		tr|A0A553SRK4|A0A553SRK4_NIACICd(2+)-exportingATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	tr|A0A553SRK4|A0A553SRK4_NIACICd(2+)-exportingATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	tr|A0A553SRK4|A0A553SRK4_NIACICd(2+)-exportingATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	545.8289184570312	2	545.847167	1089.67978	-0.04539	-2.4776E-05	-2.1513	-0.0011743	-2.1967	-0.0011991	545.8460911924498	96.066	0.34854	95.038	94.863	95.212	-1.0281					11	6	2	0	0	0	0.027462	1	8655	8655		39.253	22.78	1	27205			31038	34272	25532	25558	34273	34273					0.13852936584999043
LKLFLEVAGK	10	Unmodified	_LKLFLEVAGK_					0	0	0			REV__nc|ENSG00000165359|Q5JSJ4|INTS6L	REV__nc|ENSG00000165359|Q5JSJ4|INTS6L	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.351806640625	2	559.352617	1116.69068	0.065815	3.6814E-05	-0.42453	-0.00023746	-0.35871	-0.00020065	559.3519732968504	95.727	2.0571	93.301	92.604	94.661	-2.4256					86	40	4	0	0	0	0.44722	1	8428	8428		61.691	5.059	1	405220	+		31039	21083	25533	25559	34274	34274					0.1370033895927918
LKLFQMWKN	9	Unmodified	_LKLFQMWKN_					0	0	0		ENST00000419748.5_2_2:88890424-88892880:-|nuORF	ENST00000419748.5_2_2:88890424-88892880:-|nuORF	ENST00000419748.5_2_2:88890424-88892880:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	604.3394165039062	2	604.336444	1206.65834	1.0941	0.0006612	3.1688	0.001915	4.2629	0.0025762	604.3387188087618	153.46	0.59755	153.46	153.05	153.64	0					21	11	3	0	0	0	0.38529	1	17984	17984		53.351	10.955	1	44995			31040	11655	25534	25560	34275	34275					0.06327228284635567
LKLFYLDEL	9	Unmodified	_LKLFYLDEL_					0	0	0			REV__ENSG00000128606|ENST00000339431|LRRC17	REV__ENSG00000128606|ENST00000339431|LRRC17	MULTI-MSMS	OvCa99_classI_Rep5	1	577.3331298828125	2	577.328808	1152.64306	1.2199	0.00070426	0.31937	0.00018438	1.5392	0.00088864	577.3288770850424	130.08	6.9884	130.08	128.32	135.31	0					388	149	8	0	0	0	0.16562	2	15354	15354;15383		82.241	9.6206	1	7493100	+		31041	18864	25535	25561	34276;34277	34276					0.07284639968406736
LKLGAVTMLL	10	Unmodified	_LKLGAVTMLL_					0	0	0			REV__ENSG00000197136|ENST00000355703|PCNX3	REV__ENSG00000197136|ENST00000355703|PCNX3	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8110961914062	2	529.835746	1057.65694	1.4953	0.00079225	-2.5398	-0.0013457	-1.0446	-0.00055345	529.8342394286581	105.86	0.56866	105.86	105.66	106.23	0					21	12	2	0	0	0	0.026494	1	11892	11892		67.494	14.142	1	872210	+		31042	22895	25536	25562	34278	34278					0.13041594195874495
LKLGKLCY	8	Unmodified	_LKLGKLCY_					0	0	0			REV__nc|ENSG00000171105|P06213-2|INSR	REV__nc|ENSG00000171105|P06213-2|INSR	MULTI-MSMS	OvCa99_classI_Rep5	1	469.2835998535156	2	469.280606	936.546659	1.0947	0.00051374	4.4256	0.0020768	5.5203	0.0025906	469.2826117935817	103.24	0.79552	103.24	102.98	103.77	0					40	18	3	0	0	0	0.60486	1	11527	11527		62.978	4.1965	1	2996000	+		31043	21592	25537	25563	34279	34279					0.0758479392748086
LKLKESFDKI	10	Unmodified	_LKLKESFDKI_					0	0	0			REV__tr|A0A7D7A019|A0A7D7A019_9CLOTHistidinephosphatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08340PE=4SV=1	REV__tr|A0A7D7A019|A0A7D7A019_9CLOTHistidinephosphatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08340PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	407.5797119140625	3	407.579818	1219.71762	0.61537	0.00025081	-2.9691	-0.0012102	-2.3538	-0.00095934	407.5786357790963	57.72	2.7424	54.928	54.526	57.269	-2.792					151	53	5	0	0	0	0.49595	1	4155	4155		54.722	5.1863	1	1780300	+		31044	32431	25538	25564	34280	34280					0.11655402779797441
LKLKLTAL	8	Unmodified	_LKLKLTAL_					0	0	0		nc|ENSG00000073350|Q6P1M3-2|LLGL2;ENSG00000073350|ENST00000392550|LLGL2;ENST00000545227.6_1_17:73554011-73570984:+|nuORF	nc|ENSG00000073350|Q6P1M3-2|LLGL2	nc|ENSG00000073350|Q6P1M3-2|LLGL2	MULTI-SECPEP	OvCa9_classI_Rep2	2	450.2696838378906	2	450.318046	898.621539	1.3555	0.0006104	-2.2486	-0.0010126	-0.89309	-0.00040217	450.3165778310726	61.146	0.26109	58.387	58.254	58.515	-2.7593					6	4	2	0	0	0	0.028476	1	4533	4533		23.042	5.6775	1	10767			31045	1492	25539	25565	34281	34281					0.1681729973035999
LKLKSTTL	8	Unmodified	_LKLKSTTL_					0	0	0			REV__L1MB2_dup734|chr2:41391481-41393110:-|2.5038669870492565|0.0056028466714037|8.8|420.0|7|1|sense	REV__L1MB2_dup734|chr2:41391481-41393110:-|2.5038669870492565|0.0056028466714037|8.8|420.0|7|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	452.2571716308594	2	452.29731	902.580068	-0.0027629	-1.2497E-06	1.6917	0.00076516	1.689	0.00076391	452.29782673032935	60.139	0.51312	60.139	59.879	60.392	0					20	12	3	0	0	0	0.028476	1	5246	5246		23.042	1.3402	1	279830	+		31046	28408	25540	25566	34282	34282					0.12488118971032236
LKLKTLKIL	9	Unmodified	_LKLKTLKIL_					0	0	0		ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	MULTI-SECPEP	OvCa9_classI_Rep3	3	534.7772827148438	2	535.389003	1068.76345	0.28041	0.00015013	-2.372	-0.00127	-2.0916	-0.0011198	535.3888740996679	75.664	0.25095	73.253	73.177	73.428	-2.4106					6	4	2	0	0	0	0.027462	1	3857	3857		19.997	0	1	7463			31047	1176	25541	25567	34283	34283					0.23182092752699646
LKLLDPEKP	9	Unmodified	_LKLLDPEKP_					0	0	0		ENSG00000137573|ENST00000402687|SULF1;ENST00000521946.5_1_8:70505207-70554528:+|nuORF;SULF1|p.R637Ifs*19|1|0.12|ENSG00000137573|chr8:69627266-69627281|CCAGAGCGTGGAAGGA/-|frameshift_variant	ENSG00000137573|ENST00000402687|SULF1	ENSG00000137573|ENST00000402687|SULF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.7792358398438	2	526.82115	1051.62775	-1.218	-0.00064167	-1.9763	-0.0010412	-3.1943	-0.0016828	526.8199918744236	52.739	1.1057	49.531	49.094	50.2	-3.208					46	21	3	0	0	0	0.027462	1	3217	3217		26.693	0	1	79884			31048	4599	25542	25568	34284	34284					0.10399773171229754
LKLLHIDF	8	Unmodified	_LKLLHIDF_					0	0	0		nc|ENSG00000180263|Q6ZV73-2|FGD6;ENSG00000180263|ENST00000343958|FGD6;ENST00000451107.3_1_12:95475298-95611245:-|nuORF	nc|ENSG00000180263|Q6ZV73-2|FGD6	nc|ENSG00000180263|Q6ZV73-2|FGD6	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.2723083496094	2	499.805303	997.596052	-0.70061	-0.00035017	-4.0583	-0.0020284	-4.759	-0.0023786	499.80300926974024	89.133	0.89179	87.002	86.702	87.594	-2.1309					26	17	2	0	0	0	0.028476	1	5473	5473		27.882	0	1	60507			31049	7866	25543	25569	34285	34285					0.09715825207933904
LKLLMGENN	9	Unmodified	_LKLLMGENN_					0	0	0		ENSG00000187210|ENST00000376730|GCNT1	ENSG00000187210|ENST00000376730|GCNT1	ENSG00000187210|ENST00000376730|GCNT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.2852783203125	2	516.281334	1030.54812	1.9493	0.0010064	-0.16361	-8.4471E-05	1.7856	0.0009219	516.2809378060246	100.47	0.16669	100.47	100.36	100.53	0					5	3	2	0	0	0	0.027462	1	11132	11132		31.53	6.0796	1	157390			31050	8393	25544	25570	34286	34286					0.03406383225592435
LKLLSAAH	8	Unmodified	_LKLLSAAH_					0	0	0			REV__nc|ENSG00000164944|Q69YN4-4|VIRMA	REV__nc|ENSG00000164944|Q69YN4-4|VIRMA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	425.7754821777344	2	426.76872	851.522887	-0.4258	-0.00018172	1.5234	0.00065016	1.0976	0.00046844	426.7688859363725	69.759	0.68027	66.278	66.057	66.738	-3.4812					15	13	2	0	0	0	0.028476	1	5239	5239		28.254	0	1	20127	+		31051	21041	25545	25571	34287	34287					0.09118696485313649
LKLNQCLQL	9	Carbamidomethyl (C)	_LKLNQC(Carbamidomethyl (C))LQL_	LKLNQC(1)LQL		LKLNQC(71)LQL		0	1	0		nc|ENSG00000053524|Q86YR7-4|MCF2L2;ENSG00000053524|ENST00000328913|MCF2L2;nc|ENSG00000053524|Q86YR7-3|MCF2L2;nc|ENSG00000053524|Q86YR7-2|MCF2L2;MCF2L2|p.K797Nfs*12|1|0.42|ENSG00000053524|chr3:183216065-183216074|TGCTGAATCT/-|frameshift_variant;ENST00000492331.1_1_3:183017768-183028804:-|nuORF;ENST00000488149.5_1_3:183027559-183118319:-|nuORF	nc|ENSG00000053524|Q86YR7-4|MCF2L2	nc|ENSG00000053524|Q86YR7-4|MCF2L2	MULTI-MSMS	OvCa99_classI_Rep5	1	565.3258056640625	2	565.323534	1128.63251	1.4516	0.00082064	0.049829	2.817E-05	1.5015	0.00084881	565.3233316310339	123.67	0.5957	123.67	123.28	123.87	0					32	12	3	0	0	0	0.22961	1	14235	14235		71.296	15.791	1	622450			31052	1198	25546	25572	34288	34288	8				0.07334334042343471
LKLPGTGVMAL	11	Unmodified	_LKLPGTGVMAL_					0	0	0		HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|180|3|sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|180|3|sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|180|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7781372070312	2	550.330827	1098.6471	-0.042644	-2.3468E-05	2.6885	0.0014796	2.6459	0.0014561	550.3322078213307	62.438	0.9911	62.438	61.869	62.86	0					31	23	2	0	0	0	0.02567	1	5542	5542		52.937	0	1	683980			31053	14398	25547	25573	34289	34289					0.10172406190486072
LKLQMRRL	8	Unmodified	_LKLQMRRL_					0	0	0			REV__ENST00000494865.5_3_10:14595322-14597839:-|nuORF	REV__ENST00000494865.5_3_10:14595322-14597839:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.7779541015625	2	529.336778	1056.659	-0.78047	-0.00041313	-1.0493	-0.00055546	-1.8298	-0.00096859	529.3363348836289	94.402	1.618	92.507	91.847	93.465	-1.8956					62	31	3	0	0	0	0.028476	1	6106	6106		47.916	0	1	157950	+		31054	26622	25548	25574	34290	34290					0.13294067724336855
LKLRVRILID	10	Unmodified	_LKLRVRILID_					0	0	0		ENSG00000080854|ENST00000533871|IGSF9B;nc|ENSG00000080854|Q9UPX0|IGSF9B;IGSF9B|p.L1050Afs*16|1|0.11|ENSG00000080854|chr11:133920577-133920578|-/C|frameshift_variant	ENSG00000080854|ENST00000533871|IGSF9B	ENSG00000080854|ENST00000533871|IGSF9B	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.7042541503906	3	413.615085	1237.82343	0.85212	0.00035245	-3.0239	-0.0012507	-2.1718	-0.00089827	413.6137164604636	30.955	0.43717	30.955	30.781	31.218	0					15	8	2	0	0	0	0.027372	1	1236	1236		10.104	6.021	1	46725			31055	1646	25549	25575	34291	34291					0.21402783415942395
LKLSDVIAAL	10	Unmodified	_LKLSDVIAAL_					0	0	0			REV__nc|ENSG00000101745|Q6UB98-2|ANKRD12	REV__nc|ENSG00000101745|Q6UB98-2|ANKRD12	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.3255004882812	2	521.828975	1041.6434	0.30607	0.00015972	-3.0819	-0.0016082	-2.7758	-0.0014485	521.8272169260786	32.835	0.64722	30.139	29.953	30.601	-2.6954					23	12	3	0	0	0	0.81992	1	821	821		16.473	0	1	22839	+		31056	17515	25550	25576	34292	34292					0.12424059688282796
LKLSFQNK	8	Unmodified	_LKLSFQNK_					0	0	0			REV__nc|ENSG00000224373|P01825|IGHV4-59	REV__nc|ENSG00000224373|P01825|IGHV4-59	MULTI-MSMS	OvCa9_classI_Rep2	2	489.29083251953125	2	489.292559	976.570566	-0.29489	-0.00014429	-0.11707	-5.7281E-05	-0.41196	-0.00020157	489.2924862097453	60.206	1.6231	57.436	56.83	58.453	-2.7702					62	30	3	0	0	0	0.72896	1	4439	4439		37.159	0	1	524080	+		31057	29127	25551	25577	34293	34293					0.0813435068552053
LKLSGVLT	8	Unmodified	_LKLSGVLT_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.91162109375	2	415.770929	829.527304	0.083374	3.4664E-05	0.23784	9.8889E-05	0.32122	0.00013355	415.7707872796603	53.228	0.52143	53.228	53.087	53.609	0					14	11	2	0	0	0	0.028476	1	4261	4261		15.642	4.1308	1	169780			31058	5793;36288	25552	25578	34294	34294					0.10572160908225214
LKLSSNTTTE	10	Unmodified	_LKLSSNTTTE_					0	0	0			REV__AKAP6|p.S1378_E1379insSLKLG|1|0.02|ENSG00000151320|chr14:32821947-32821948|-/TCCTTGAAGCTTGGA|inframe_insertion	REV__AKAP6|p.S1378_E1379insSLKLG|1|0.02|ENSG00000151320|chr14:32821947-32821948|-/TCCTTGAAGCTTGGA|inframe_insertion	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.8198852539062	2	547.290411	1092.56627	-0.93181	-0.00050997	-3.4129	-0.0018678	-4.3447	-0.0023778	547.2881858348181	66.061	0.95338	66.061	65.665	66.619	0					53	23	3	0	0	0	0.026606	1	6089	6089		44.377	0	1	942520	+		31059	15587	25553	25579	34295	34295					0.023687966812758532
LKLTAPAVE	9	Unmodified	_LKLTAPAVE_					0	0	0		ENSG00000160972|ENST00000435887|PPP1R16A;ENST00000526183.5_1_8:145725999-145727283:+|nuORF	ENSG00000160972|ENST00000435887|PPP1R16A	ENSG00000160972|ENST00000435887|PPP1R16A	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.2562255859375	2	471.286943	940.559333	0.41939	0.00019765	-1.6491	-0.00077719	-1.2297	-0.00057954	471.285807282842	46.046	0.83184	46.046	45.844	46.676	0					34	18	3	0	0	0	0.027462	1	3256	3256		29.15	4.9468	1	329470			31060	6110	25554	25580	34296	34296					0.0866752859137705
LKLTLLLQV	9	Unmodified	_LKLTLLLQV_					0	0	0			REV__nc|ENSG00000125505|Q96N66-3|MBOAT7	REV__nc|ENSG00000125505|Q96N66-3|MBOAT7	MULTI-MSMS	OvCa99_classI_Rep5	1	520.858642578125	2	520.857535	1039.70052	1.9328	0.0010067	0.45107	0.00023495	2.3839	0.0012417	520.8576138493462	86.199	1.7589	86.199	85.912	87.671	0					94	42	4	0	0	0	0.051592	1	9089	9089		117.81	13.754	1	5705600	+		31061	18729	25555	25581	34297	34297					0.18225526964647543
LKLTQVALP	9	Unmodified	_LKLTQVALP_					0	0	0		ENST00000585517.5_1_17:40469224-40474452:-|nuORF	ENST00000585517.5_1_17:40469224-40474452:-|nuORF	ENST00000585517.5_1_17:40469224-40474452:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.2791748046875	2	491.81841	981.622267	0.0036439	1.7921E-06	-0.27393	-0.00013472	-0.27028	-0.00013293	491.8178317481918	104.89	0.51039	102.77	102.59	103.1	-2.1192					14	9	2	0	0	0	0.027462	1	9485	9485		37.159	22.495	1	29271			31062	14036	25556	25582	34298	34298					0.13072094379401733
LKLTQVALP	9	Unmodified	_LKLTQVALP_					0	0	0		ENST00000585517.5_1_17:40469224-40474452:-|nuORF	ENST00000585517.5_1_17:40469224-40474452:-|nuORF	ENST00000585517.5_1_17:40469224-40474452:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	491.81841	981.622267	-0.24744	-0.00012169	-0.70706	-0.00034774	-0.95449	-0.00046944	491.8181473869837	103.4	0.59249	102.71	102.48	103.07	-0.68459	-0.027405	-0.00011469	NaN	37.159	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21977			31063	14036	25556	25582							0.13072094379401733
LKLTSRAPK	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LKLTSRAPK_					1	0	0		ENST00000378024.8_2_11:62290481-62290559:-|nuORF	ENST00000378024.8_2_11:62290481-62290559:-|nuORF	ENST00000378024.8_2_11:62290481-62290559:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	528.3319702148438	2	528.332216	1054.64988	3.0268	0.0015991	-3.0942	-0.0016348	-0.067462	-3.5642E-05	528.330384856165	25.512	0.98969	22.802	22.428	23.418	-2.7097					46	22	4	0	0	0	0.44568	1	275	275		47.657	15.702	1	151950			31064	11098	25557	25583	34299	34299					0.12473997639654044
LKLTVDDFEF	10	Unmodified	_LKLTVDDFEF_					0	0	0		ENSG00000086200|ENST00000325324|IPO11;nc|ENSG00000086200|Q9UI26-2|IPO11	ENSG00000086200|ENST00000325324|IPO11	ENSG00000086200|ENST00000325324|IPO11	MULTI-MSMS	OvCa99_classI_Rep5	1	409.5513000488281	3	409.548295	1225.62306	3.0803	0.0012615	3.0445	0.0012469	6.1248	0.0025084	409.54942248250336	83.432	8.3397	83.432	82.437	90.777	0					407	201	4	0	0	0	0.58667	1	8658	8658		43.651	6.1426	1	7486300			31065	1749	25558	25584	34300	34300					0.01926844237800651
LKLVLEILF	9	Unmodified	_LKLVLEILF_					0	0	0		ENSG00000185127|ENST00000332290|C6orf120	ENSG00000185127|ENST00000332290|C6orf120	ENSG00000185127|ENST00000332290|C6orf120	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2708740234375	2	544.359911	1086.70527	2.4142	0.0013142	-2.589	-0.0014093	-0.17473	-9.5118E-05	544.3585554428362	89.124	0.51048	89.124	88.883	89.394	0					22	12	2	0	0	0	0.027462	1	9514	9514		17.365	0.89182	1	304450			31066	8227	25559	25585	34301	34301					0.1653841110742178
LKLVLGRLPE	10	Unmodified	_LKLVLGRLPE_					0	0	0		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;TSC2|p.R799Afs*25|1|0.29|ENSG00000103197|chr16:2074238-2074253|CCGCTGTGCCAGCCAG/-|frameshift_variant	nc|ENSG00000103197|P49815-7|TSC2	nc|ENSG00000103197|P49815-7|TSC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.3082885742188	2	569.371341	1136.72813	-0.17041	-9.7025E-05	-0.19371	-0.0001103	-0.36412	-0.00020732	569.3716680835518	104.87	0.30289	104.87	104.7	105	0					11	6	2	0	0	0	0.027088	1	11783	11783		14.137	0	1	118230			31067	2293	25560	25586	34302	34302					0.16523430224901858
LKLVRIVSR	9	Unmodified	_LKLVRIVSR_					0	0	0		ENST00000534843.1_1_12:12982539-12982698:+|nuORF	ENST00000534843.1_1_12:12982539-12982698:+|nuORF	ENST00000534843.1_1_12:12982539-12982698:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	542.370849609375	2	542.371675	1082.7288	0.093673	5.0806E-05	-0.44981	-0.00024396	-0.35614	-0.00019316	542.3713013214245	41.12	2.1196	38.411	38.093	40.213	-2.7097					118	42	4	0	0	0	0.33652	1	2135	2135		58.782	2.0609	1	313610			31068	13364	25561	25587	34303	34303					0.19074269664611165
LKLVRYRA	8	Unmodified	_LKLVRYRA_					0	0	0		ENSG00000215251|ENST00000380266|FASTKD5	ENSG00000215251|ENST00000380266|FASTKD5	ENSG00000215251|ENST00000380266|FASTKD5	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.2358093261719	2	509.829643	1017.64473	-0.0826	-4.2112E-05	0.67949	0.00034642	0.59689	0.00030431	509.8297837769156	71.248	1.1131	71.248	70.722	71.835	0					34	27	2	0	0	0	0.028476	1	6823	6823		40.573	10.069	1	137470			31069	9204	25562	25588	34304	34304					0.13661738567691373
LKLWQRFFRKN	11	Unmodified	_LKLWQRFFRKN_					0	0	0			REV__tr|A0A553SMZ1|A0A553SMZ1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23475PE=4SV=1	REV__tr|A0A553SMZ1|A0A553SMZ1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23475PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.3064575195312	3	512.636772	1534.88849	-0.2302	-0.00011801	-2.9101	-0.0014918	-3.1403	-0.0016099	512.6352498554202	30.091	0.69705	30.091	29.885	30.582	0					38	13	4	0	0	0	0.026448	1	1165	1165		13.508	7.5069	1	451430	+		31070	30383	25563	25589	34305	34305					0.14243777941783264
LKMCFFAHR	9	Unmodified	_LKMCFFAHR_					0	0	0		ENST00000510629.1_1_5:57752724-57753235:-|nuORF	ENST00000510629.1_1_5:57752724-57753235:-|nuORF	ENST00000510629.1_1_5:57752724-57753235:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.3092651367188	2	576.793889	1151.57323	-0.39175	-0.00022596	-3.9051	-0.0022524	-4.2968	-0.0024784	576.7918488898786	47.183	0.39799	47.183	46.938	47.336	0					14	8	2	0	0	0	0.027462	1	3388	3388		16.473	9.2798	1	175960			31071	12975	25564	25590	34306	34306					0.0035015954715618136
LKMDWRKVK	9	Unmodified	_LKMDWRKVK_					0	0	0			REV__ENSG00000162998|ENST00000295113|FRZB	REV__ENSG00000162998|ENST00000295113|FRZB	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.2115478515625	3	401.905871	1202.69578	0.59123	0.00023762	2.2394	0.00090002	2.8306	0.0011376	401.90664140644026	50.17	0.56328	50.17	49.988	50.551	0					15	12	2	0	0	0	0.027462	1	3768	3768		16.717	0	1	213210	+		31072	20798	25565	25591	34307	34307					0.10254319550222135
LKMEQLLPV	9	Unmodified	_LKMEQLLPV_					0	0	0			REV__ENST00000342992.10_3_2:179428813-179429086:-|nuORF	REV__ENST00000342992.10_3_2:179428813-179429086:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	536.3251342773438	2	535.817553	1069.62055	0.23342	0.00012507	3.8452	0.0020603	4.0786	0.0021854	535.818889443292	66.682	0.56196	66.682	66.452	67.014	0					24	13	2	0	0	0	0.3076	1	6200	6200		62.107	7.3311	1	2777500	+		31073	24659	25566	25592	34308	34308					0.08852717299146207
LKMEQLLPV	9	Unmodified	_LKMEQLLPV_					0	0	0			REV__ENST00000342992.10_3_2:179428813-179429086:-|nuORF	REV__ENST00000342992.10_3_2:179428813-179429086:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	535.817553	1069.62055	-1.2467	-0.00066801	2.4907	0.0013346	1.244	0.00066656	535.8188458673238	69.544	1.4994	66.923	66.266	67.766	-2.6203	0.18954	-0.00022533	NaN	62.107	48	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74773	+		31074	24659	25566	25592							0.08852717299146207
LKMEQLLPV	9	Unmodified	_LKMEQLLPV_					0	0	0			REV__ENST00000342992.10_3_2:179428813-179429086:-|nuORF	REV__ENST00000342992.10_3_2:179428813-179429086:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	535.817553	1069.62055	-1.6214	-0.00086877	2.5573	0.0013702	0.93589	0.00050147	535.81889150439	70.077	0.44311	66.596	66.393	66.836	-3.4812	-0.13751	-0.000154	NaN	62.107	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45622	+		31075	24659	25566	25592							0.08852717299146207
LKMGDLERSLK	11	Unmodified	_LKMGDLERSLK_					0	0	0		nc|ENSG00000204815|Q96NG3-2|ODAD4;ENSG00000204815|ENST00000377540|ODAD4	nc|ENSG00000204815|Q96NG3-2|ODAD4	nc|ENSG00000204815|Q96NG3-2|ODAD4	MULTI-MSMS	OvCa9_classI_Rep4_	4	645.3613891601562	2	645.36593	1288.71731	0.48506	0.00031304	-3.5779	-0.0023091	-3.0929	-0.001996	645.3634288602703	116.16	1.0105	114.79	114.5	115.51	-1.3645					53	19	4	0	0	0	0.68399	1	10852	10852		35.152	4.8343	1	138330			31076	9029	25567	25593	34309	34309					0.08449659788288955
LKMISLLRHQ	10	Unmodified	_LKMISLLRHQ_					0	0	0		ENST00000257749.8_2_6:90638105-90638159:-|nuORF	ENST00000257749.8_2_6:90638105-90638159:-|nuORF	ENST00000257749.8_2_6:90638105-90638159:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8682861328125	2	619.873725	1237.7329	-3.1788	-0.0019704	-3.6837	-0.0022835	-6.8625	-0.0042539	619.8711859647292	147.21	3.9856	146.98	144.83	148.82	-0.22696					207	79	4	0	0	0	0.81992	1	14988	14988		16.473	0.83134	1	163200			31077	9828	25568	25594	34310	34310					0.12353991096006212
LKMKEKKPL	9	Unmodified	_LKMKEKKPL_					0	0	0			REV__ENST00000584979.1_1_18:14361435-14361894:-|nuORF	REV__ENST00000584979.1_1_18:14361435-14361894:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.318115234375	2	557.85447	1113.69439	0.26174	0.00014601	2.6759	0.0014928	2.9377	0.0016388	557.8559687969305	30.556	0.44757	30.556	30.383	30.831	0					19	8	3	0	0	0	0.027462	1	1177	1177		20.947	4.2295	1	241060	+		31078	20650	25569	25595	34311	34311					0.14208685461494497
LKMLLELV	8	Unmodified	_LKMLLELV_					0	0	0		ENST00000342992.10_3_2:179437654-179437981:-|nuORF	ENST00000342992.10_3_2:179437654-179437981:-|nuORF	ENST00000342992.10_3_2:179437654-179437981:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	479.80364990234375	2	479.803914	957.593275	-0.055833	-2.6789E-05	4.1531	0.0019927	4.0973	0.0019659	479.8056963776019	30.295	0.1973	30.295	30.136	30.334	0					8	3	3	0	0	0	0.64026	1	1157	1157		55.504	0.72789	1	132690			31079	10589	25570	25596	34312	34312					0.11278233758775968
LKMLNIPSI	9	Unmodified	_LKMLNIPSI_					0	0	0		sp|Q6SW59|PP65_HCMVM65kDaphosphoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL83PE=1SV=1;sp|P06725|PP65_HCMVA65kDaphosphoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL83PE=1SV=2	sp|Q6SW59|PP65_HCMVM65kDaphosphoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL83PE=1SV=1	sp|Q6SW59|PP65_HCMVM65kDaphosphoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL83PE=1SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.7908325195312	2	514.81227	1027.60999	-1.5547	-0.0008004	-0.7304	-0.00037602	-2.2851	-0.0011764	514.8126868939747	88.629	1.2952	86.026	85.528	86.823	-2.6027					72	25	4	0	0	0	0.027433	1	7539	7539		60.972	5.4677	1	208880			31080	32882	25571	25597	34313	34313					0.0972873464472741
LKMLNIPSI	9	Unmodified	_LKMLNIPSI_					0	0	0		sp|Q6SW59|PP65_HCMVM65kDaphosphoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL83PE=1SV=1;sp|P06725|PP65_HCMVA65kDaphosphoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL83PE=1SV=2	sp|Q6SW59|PP65_HCMVM65kDaphosphoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL83PE=1SV=1	sp|Q6SW59|PP65_HCMVM65kDaphosphoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL83PE=1SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.81227	1027.60999	1.2225	0.00062935	-4.6086	-0.0023726	-3.3861	-0.0017432	514.8110676781713	87.301	1.3369	85.87	85.438	86.775	-1.4311	-0.153	-0.0020856	NaN	60.972	56	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210040			31081	32882	25571	25597							0.0972873464472741
LKMNLKNVN	9	Unmodified	_LKMNLKNVN_					0	0	0		ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	ENSG00000257315|ENST00000550078|ZBED6	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.2952880859375	2	537.310426	1072.6063	0.89239	0.00047949	0.95402	0.0005126	1.8464	0.00099209	537.3111879445187	90.382	0.29591	89.08	88.978	89.274	-1.302					7	5	2	0	0	0	0.027456	1	7990	7990		23.042	0	1	7411.3			31082	9470	25572	25598	34314	34314					0.0729006487085826
LKMQICLSK	9	Unmodified	_LKMQICLSK_					0	0	0			REV__nc|ENSG00000196535|Q92614-5|MYO18A	REV__nc|ENSG00000196535|Q92614-5|MYO18A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.3336181640625	2	532.303755	1062.59296	-1.9726	-0.00105	-2.4912	-0.0013261	-4.4638	-0.0023761	532.3041515111897	42.4	0.87067	39.42	39.167	40.037	-2.9804					42	16	3	0	0	0	0.027459	1	1966	1966		44.377	0	1	136830	+		31083	22840	25573	25599	34315	34315					0.06416490767264804
LKMQICLSK	9	Unmodified	_LKMQICLSK_					0	0	0			REV__nc|ENSG00000196535|Q92614-5|MYO18A	REV__nc|ENSG00000196535|Q92614-5|MYO18A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	532.303755	1062.59296	-0.0045356	-2.4143E-06	-2.5344	-0.0013491	-2.5389	-0.0013515	532.3034425163961	42.089	0.93744	39.379	39.078	40.016	-2.7097	-0.020336	-2.0275E-05	NaN	44.377	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43817	+		31084	22840	25573	25599							0.06416490767264804
LKMQVYIK	8	Unmodified	_LKMQVYIK_					0	0	0			REV__tr|A0A7D6VV55|A0A7D6VV55_9CLOTAIPRfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09490PE=4SV=1	REV__tr|A0A7D6VV55|A0A7D6VV55_9CLOTAIPRfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09490PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.8089294433594	2	511.806988	1021.59942	0.46079	0.00023583	2.739	0.0014019	3.1998	0.0016377	511.80831442868	37.858	1.6886	34.966	34.541	36.23	-2.8925					89	33	4	0	0	0	0.71369	1	1442	1442		40.573	1.7665	1	929280	+		31085	31707	25574	25600	34316	34316					0.08948751990294568
LKMSVQSGIL	10	Unmodified	_LKMSVQSGIL_					0	0	0		ENST00000473564.1_1_7:6439790-6441547:+|nuORF	ENST00000473564.1_1_7:6439790-6441547:+|nuORF	ENST00000473564.1_1_7:6439790-6441547:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	538.311767578125	2	538.312635	1074.61072	0.12204	6.5698E-05	-4.1053	-0.00221	-3.9833	-0.0021443	538.3105544714867	96.422	1.6226	94.593	94.221	95.844	-1.8286					83	31	5	0	0	0	0.19075	1	6355	6355		95.815	10.654	1	704480			31086	12411	25575	25601	34317	34317					0.07639529293805936
LKMVKLHGF	9	Unmodified	_LKMVKLHGF_					0	0	0		ENST00000310015.10_1_2:174774422-174774515:-|nuORF	ENST00000310015.10_1_2:174774422-174774515:-|nuORF	ENST00000310015.10_1_2:174774422-174774515:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.2959594726562	2	536.82043	1071.62631	-2.3083	-0.0012391	3.7097	0.0019914	1.4014	0.00075231	537.3239072991196	61.947	0.81689	59.188	58.568	59.385	-2.7593					21	15	2	0	0	0	0.027462	1	4560	4560		44.117	21.074	1	27176			31087	10280	25576	25602	34318	34318					0.09335860601504464
LKMVMHAR	8	Unmodified	_LKMVMHAR_					0	0	0		ENSG00000121022|ENST00000357849|COPS5;ENST00000521386.5_1_8:67958045-67971691:-|nuORF;ENST00000521509.5_1_8:67955470-67971691:-|nuORF;ENST00000521386.5_1_8:67971560-67971647:-|nuORF	ENSG00000121022|ENST00000357849|COPS5	ENSG00000121022|ENST00000357849|COPS5	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.29241943359375	2	493.275332	984.536111	-0.36079	-0.00017797	-0.56806	-0.00028021	-0.92885	-0.00045818	493.27488331504907	33.154	0.25126	30.444	30.371	30.622	-2.7097					6	4	2	0	0	0	0.028476	1	1153	1153		19.36	0	1	9073.2			31088	3465	25577	25603	34319	34319					0.04322488001412239
LKMVYRFPV	9	Unmodified	_LKMVYRFPV_					0	0	0		ENST00000371822.9_1_X:117583420-117583648:+|nuORF	ENST00000371822.9_1_X:117583420-117583648:+|nuORF	ENST00000371822.9_1_X:117583420-117583648:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.3092651367188	2	576.833537	1151.65252	-0.36977	-0.00021329	2.4766	0.0014286	2.1068	0.0012153	576.8333591962776	47.032	0.61647	47.032	46.762	47.379	0					35	13	4	0	0	0	0.027462	1	3388	3388		12.207	0	1	362790			31089	10966	25578	25604	34320	34320					0.08276129772957574
LKNACHNGI	9	Unmodified	_LKNACHNGI_					0	0	0			REV__ENSG00000172071|ENST00000303236|EIF2AK3	REV__ENSG00000172071|ENST00000303236|EIF2AK3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.2705078125	2	485.250369	968.486184	-0.35547	-0.00017249	2.8373	0.0013768	2.4819	0.0012043	485.2513850996761	52.172	1.1519	48.964	48.692	49.844	-3.208					30	22	2	0	0	0	0.027462	1	3185	3185		30.504	6.3009	1	96251	+		31090	21673	25579	25605	34321	34321					0.0006807659710830194
LKNAGQKYW	9	Unmodified	_LKNAGQKYW_					0	0	0		tr|A0A7D6ZHP2|A0A7D6ZHP2_9CLOT4-alpha-glucanotransferaseOS=ClostridiumintestinaleOX=36845GN=malQPE=3SV=1	tr|A0A7D6ZHP2|A0A7D6ZHP2_9CLOT4-alpha-glucanotransferaseOS=ClostridiumintestinaleOX=36845GN=malQPE=3SV=1	tr|A0A7D6ZHP2|A0A7D6ZHP2_9CLOT4-alpha-glucanotransferaseOS=ClostridiumintestinaleOX=36845GN=malQPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.3233032226562	2	554.300916	1106.58728	-0.75626	-0.0004192	-3.0766	-0.0017054	-3.8329	-0.0021246	554.2960273754012	50.869	0.50811	47.696	47.464	47.972	-3.1734					17	9	3	0	0	0	0.027456	1	2971	2971		38.806	7.2763	1	15011			31091	35584	25580	25606	34322	34322					0.03824851571448562
LKNGPNDVV	9	Unmodified	_LKNGPNDVV_					0	0	0		nc|ENSG00000134324|Q14693|LPIN1;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;ENSG00000134324|ENST00000674199|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1	nc|ENSG00000134324|Q14693|LPIN1	nc|ENSG00000134324|Q14693|LPIN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.2648620605469	2	478.263999	954.513445	0.1499	7.1694E-05	-0.93042	-0.00044498	-0.78051	-0.00037329	478.2635310226388	62.047	3.0424	58.589	57.417	60.459	-3.4577					136	62	4	0	0	0	0.3249	1	4324	4324		60.118	5.3419	1	2869500			31092	4284	25581	25607	34323	34323					0.03436883409131042
LKNHYKDI	8	Unmodified	_LKNHYKDI_					0	0	0		nc|ENSG00000107789|Q9UNW1-4|MINPP1;ENSG00000107789|ENST00000371996|MINPP1	nc|ENSG00000107789|Q9UNW1-4|MINPP1	nc|ENSG00000107789|Q9UNW1-4|MINPP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.7974243164062	2	515.787641	1029.56073	-0.93144	-0.00048043	1.6514	0.00085177	0.71996	0.00037135	515.7881904035289	53.41	0.56451	53.41	52.999	53.564	0					18	12	2	0	0	0	0.028476	1	4264	4264		47.916	14.4	1	315460			31093	2616	25582	25608	34324	34324					0.04713162680127425
LKNIAPLGDPL	11	Unmodified	_LKNIAPLGDPL_					0	0	0		tr|A0A7D6VT34|A0A7D6VT34_9CLOTFerrousirontransportproteinAOS=ClostridiumintestinaleOX=36845GN=HZF06_09120PE=4SV=1	tr|A0A7D6VT34|A0A7D6VT34_9CLOTFerrousirontransportproteinAOS=ClostridiumintestinaleOX=36845GN=HZF06_09120PE=4SV=1	tr|A0A7D6VT34|A0A7D6VT34_9CLOTFerrousirontransportproteinAOS=ClostridiumintestinaleOX=36845GN=HZF06_09120PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8419799804688	2	575.845156	1149.67576	-0.33973	-0.00019563	-2.5857	-0.0014889	-2.9254	-0.0016846	575.8433458482052	142.38	3.7668	140.93	139.05	142.82	-1.4532					179	72	3	0	0	0	0.72244	1	13838	13838		21.96	0	1	165140			31094	35084	25583	25609	34325	34325					0.10690847091291289
LKNILPKQN	9	Unmodified	_LKNILPKQN_					0	0	0		nc|ENSG00000178177|Q8N3X6-2|LCORL;nc|ENSG00000178177|Q8N3X6|LCORL	nc|ENSG00000178177|Q8N3X6-2|LCORL	nc|ENSG00000178177|Q8N3X6-2|LCORL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.2967529296875	2	534.332216	1066.64988	-1.9457	-0.0010397	0.97641	0.00052173	-0.96933	-0.00051794	534.3326234266843	71.75	0.7802	68.293	67.924	68.704	-3.4563					28	15	2	0	0	0	0.027462	1	5447	5447		38.806	28.541	1	127470			31095	15195	25584	25610	34326	34326					0.11921997639660731
LKNKFYVRGT	10	Unmodified	_LKNKFYVRGT_					0	0	0			REV__ENST00000552427.1_1_12:105464346-105478214:-|nuORF	REV__ENST00000552427.1_1_12:105464346-105478214:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	409.24200439453125	3	409.239907	1224.69789	1.9244	0.00078752	4.2593	0.0017431	6.1836	0.0025306	409.24151722865713	36.236	1.595	33.387	32.99	34.585	-2.849					71	31	3	0	0	0	0.79792	1	1264	1264		19.263	2.5453	1	214070	+		31096	19349	25585	25611	34327	34327					0.0945307155966475
LKNLFTLH	8	Unmodified	_LKNLFTLH_					0	0	0		ENSG00000197275|ENST00000336148|RAD54B	ENSG00000197275|ENST00000336148|RAD54B	ENSG00000197275|ENST00000336148|RAD54B	MULTI-MSMS	OvCa9_classI_Rep2	2	493.2924499511719	2	493.295102	984.575651	-0.24875	-0.00012271	-4.3166	-0.0021294	-4.5654	-0.0022521	493.292822764803	32.904	0.79625	30.194	29.976	30.772	-2.7097					37	15	3	0	0	0	0.68714	1	1147	1147		45.952	1.8352	1	162900			31097	8695	25586	25612	34328	34328					0.08274654548142735
LKNLKLFTL	9	Unmodified	_LKNLKLFTL_					0	0	0		nc|ENSG00000116761|P32929-2|CTH;nc|ENSG00000116761|P32929-3|CTH;ENSG00000116761|ENST00000370938|CTH	nc|ENSG00000116761|P32929-2|CTH	nc|ENSG00000116761|P32929-2|CTH	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.7717895507812	2	545.35516	1088.69577	-1.4972	-0.00081649	-2.9449	-0.001606	-4.4421	-0.0024225	545.3534474831528	43.27	0.57833	40.263	40.01	40.589	-3.0074					14	10	2	0	0	0	0.027462	1	2041	2041		34.173	12.213	1	17635			31098	3208	25587	25613	34329	34329					0.1549664282190406
LKNMDEPSLL	10	Unmodified	_LKNMDEPSLL_					0	0	0			REV__ENST00000470105.1_1_9:116790870-116812444:+|nuORF	REV__ENST00000470105.1_1_9:116790870-116812444:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	580.3060302734375	2	580.305007	1158.59546	-1.2378	-0.00071832	-0.47602	-0.00027624	-1.7139	-0.00099456	580.3047074452444	101.31	0.87466	99.043	98.838	99.712	-2.2665					35	17	3	0	0	0	0.45822	1	9090	9090		60.118	1.8883	1	202690	+		31099	20528	25588	25614	34330	34330					0.022506177059312904
LKNPNKNVM	9	Unmodified	_LKNPNKNVM_					0	0	0		CON__A2I7N1	CON__A2I7N1	CON__A2I7N1	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.778076171875	2	529.294776	1056.575	-0.95269	-0.00050425	-0.87669	-0.00046403	-1.8294	-0.00096828	529.2944605485914	94.308	0.71063	92.413	92.001	92.712	-1.8956					15	13	2	0	0	0	0.027462	1	6112	6112		30.504	0	1	22915		+	31100	598	25590	25615	34331	34331					0.0489749183677759
LKNQKFFDELR	11	Unmodified	_LKNQKFFDELR_					0	0	0		nc|ENSG00000169083|P10275-2|AR;ENSG00000169083|ENST00000374690|AR	nc|ENSG00000169083|P10275-2|AR	nc|ENSG00000169083|P10275-2|AR	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.27813720703125	3	479.933143	1436.7776	-0.32251	-0.00015478	0.090423	4.3397E-05	-0.23209	-0.00011139	480.26734576688744	38.92	0.93442	38.92	38.486	39.42	0					40	20	2	0	0	0	0.025624	1	2210	2210		45.908	11.822	1	244910			31101	6973	25591	25616	34332	34332					0.07668093443021462
LKNRPIRTP	9	Unmodified	_LKNRPIRTP_					0	0	0		ENST00000585698.1_1_19:55791025-55791180:-|nuORF;ENST00000593263.5_1_19:55791025-55791324:-|nuORF	ENST00000585698.1_1_19:55791025-55791180:-|nuORF	ENST00000585698.1_1_19:55791025-55791180:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	548.8023071289062	2	547.843282	1093.67201	-0.64351	-0.00035254	2.1807	0.0011947	1.5372	0.00084216	548.3454709986803	114.73	0.69054	113.68	113.45	114.14	-1.055					25	13	3	0	0	0	0.027462	1	8473	8473		45.972	3.5761	1	47350			31102	14039	25592	25617	34333	34333					0.12892222108075657
LKNTLLVSLII	11	Unmodified	_LKNTLLVSLII_					0	0	0		tr|A0A7D7AGQ8|A0A7D7AGQ8_9CLOTVanZfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09635PE=4SV=1	tr|A0A7D7AGQ8|A0A7D7AGQ8_9CLOTVanZfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09635PE=4SV=1	tr|A0A7D7AGQ8|A0A7D7AGQ8_9CLOTVanZfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09635PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	409.6075744628906	3	409.607596	1225.80096	1.1396	0.00046679	-0.24169	-9.9E-05	0.89792	0.00036779	409.6074659919173	107.95	5.8573	106.76	106.27	112.13	-1.1978					409	114	4	0	0	0	0.66495	1	7794	7794		38.754	0.94209	1	1037400			31103	36268	25593	25618	34334	34334					0.19709139227666128
LKNVFNILI	9	Unmodified	_LKNVFNILI_					0	0	0		nc|ENSG00000198216|Q15878-2|CACNA1E;nc|ENSG00000198216|Q15878-3|CACNA1E;ENSG00000198216|ENST00000367573|CACNA1E;nc|ENSG00000141837|O00555-5|CACNA1A;nc|ENSG00000141837|O00555-3|CACNA1A;nc|ENSG00000141837|O00555-2|CACNA1A;nc|ENSG00000141837|O00555-6|CACNA1A;nc|ENSG00000141837|O00555-4|CACNA1A;ENSG00000141837|ENST00000360228|CACNA1A	nc|ENSG00000198216|Q15878-2|CACNA1E	nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.8074340820312	2	537.33951	1072.66447	-0.65078	-0.00034969	-0.88015	-0.00047294	-1.5309	-0.00082263	537.3389812476969	75.558	0.72872	72.619	72.304	73.033	-2.9389					28	14	3	0	0	0	0.027426	1	5919	5919		53.351	0	1	59556			31104	8797	25594	25619	34335	34335					0.13104069787800654
LKNVGEPLI	9	Unmodified	_LKNVGEPLI_					0	0	0			REV__tr|A0A553SPY2|A0A553SPY2_NIACIHADfamilyphosphataseOS=NialliacirculansOX=1397GN=CEQ21_09625PE=4SV=1	REV__tr|A0A553SPY2|A0A553SPY2_NIACIHADfamilyphosphataseOS=NialliacirculansOX=1397GN=CEQ21_09625PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	491.7993469238281	2	491.800217	981.585882	0.45767	0.00022508	-0.86132	-0.0004236	-0.40365	-0.00019852	491.7997614216502	106.26	3.1068	105.82	105.5	108.61	-0.43642					130	62	3	0	0	0	0.2422	1	9939	9939		69.628	0.8408	1	1827600	+		31105	30583	25595	25620	34336	34336					0.09435217482700864
LKNVGEPLI	9	Unmodified	_LKNVGEPLI_					0	0	0			REV__tr|A0A553SPY2|A0A553SPY2_NIACIHADfamilyphosphataseOS=NialliacirculansOX=1397GN=CEQ21_09625PE=4SV=1	REV__tr|A0A553SPY2|A0A553SPY2_NIACIHADfamilyphosphataseOS=NialliacirculansOX=1397GN=CEQ21_09625PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	491.7989501953125	2	491.800217	981.585882	0.015139	7.4454E-06	-0.71075	-0.00034955	-0.69561	-0.0003421	491.79978875845774	107.24	3.4509	105.98	105.67	109.12	-1.267					161	66	5	0	0	0	0.27001	1	7657	7657		66.429	0	1	2343100	+		31106	30583	25595	25620	34337	34337					0.09435217482700864
LKPACIERF	9	Unmodified	_LKPACIERF_					0	0	0		ENST00000344120.4_1_5:141699332-141704471:-|nuORF	ENST00000344120.4_1_5:141699332-141704471:-|nuORF	ENST00000344120.4_1_5:141699332-141704471:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	538.7977294921875	2	538.799694	1075.58484	-0.2888	-0.00015561	-3.4898	-0.0018803	-3.7786	-0.0020359	538.7976526049118	23.502	0.69188	23.502	23.144	23.836	0					39	13	4	0	0	0	0.63422	1	355	355		27.882	1.0861	1	115790			31107	10609	25596	25621	34338	34338					0.050066798421539715
LKPANVFL	8	Unmodified	_LKPANVFL_					0	0	0		nc|ENSG00000117650|P51955-3|NEK2;nc|ENSG00000117650|P51955-2|NEK2;nc|ENSG00000117650|P51955-4|NEK2;ENSG00000117650|ENST00000366999|NEK2	nc|ENSG00000117650|P51955-3|NEK2	nc|ENSG00000117650|P51955-3|NEK2	MULTI-MSMS	OvCa9_classI_Rep4_	4	451.2787780761719	2	451.278921	900.543289	0.9517	0.00042948	-1.2851	-0.00057994	-0.33341	-0.00015046	451.27828212128196	112.17	1.7679	110.66	110.32	112.08	-1.5111					105	34	4	0	0	0	0.52992	1	10358	10358		74.517	0	1	1261800			31108	3271	25597	25622	34339	34339					0.08903867145136246
LKPCIFSKL	9	Unmodified	_LKPCIFSKL_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2883911132812	2	524.814813	1047.61507	-1.0391	-0.00054535	-2.5415	-0.0013338	-3.5806	-0.0018792	524.8121205801118	39.903	0.53151	39.903	39.669	40.2	0					22	11	3	0	0	0	0.027462	1	2398	2398		29.15	8.2026	1	148160	+		31109	22731	25598	25623	34340	34340					0.09317038507356301
LKPFVPQPDP	10	Unmodified	_LKPFVPQPDP_					0	0	0			REV__ENST00000315302.6_1_4:183063492-183063612:-|nuORF	REV__ENST00000315302.6_1_4:183063492-183063612:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	569.7840576171875	2	569.318774	1136.623	1.2841	0.00073107	-1.3346	-0.0007598	-0.050479	-2.8739E-05	569.8207601793525	89.89	1.5833	88.588	87.395	88.978	-1.302					50	31	3	0	0	0	0.026994	1	7931	7931		25.574	0	1	43749	+		31110	24397	25599	25624	34341	34341					0.06014889028483594
LKPGELRVR	9	Unmodified	_LKPGELRVR_					0	0	0			REV__ENST00000589786.5_1_19:34303872-34304274:+|nuORF	REV__ENST00000589786.5_1_19:34303872-34304274:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.3069458007812	2	534.337833	1066.66111	0.07773	4.1534E-05	0.2507	0.00013396	0.32843	0.00017549	534.3379378411597	70.948	0.38651	70.948	70.722	71.109	0					16	9	2	0	0	0	0.027462	1	6814	6814		27.882	4.8398	1	593500	+		31111	27910	25600	25625	34342	34342					0.13044819733772783
LKPGGRLIL	9	Unmodified	_LKPGGRLIL_					0	0	0		ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	MULTI-MSMS	OvCa9_classI_Rep2	2	483.8270568847656	2	483.826569	965.638586	-0.60225	-0.00029139	0.18575	8.987E-05	-0.41651	-0.00020152	483.82654204477944	76.923	1.8627	75.133	74.894	76.757	-1.7894					84	35	4	0	0	0	0.56889	1	6397	6397		35.618	0.41757	1	705570			31112	3425	25601	25626	34343	34343					0.1543922033616809
LKPGGRLIL	9	Unmodified	_LKPGGRLIL_					0	0	0		ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	MULTI-MSMS	OvCa9_classI_Rep3	3	483.8262023925781	2	483.826569	965.638586	-1.0787	-0.00052189	0.69458	0.00033606	-0.3841	-0.00018584	483.826819441973	77.321	1.8681	74.969	74.681	76.549	-2.3527					107	36	4	0	0	0	0.22961	1	4058	4058		71.296	11.002	1	951630			31113	3425	25601	25626	34344	34344					0.1543922033616809
LKPGGRLIL	9	Unmodified	_LKPGGRLIL_					0	0	0		ENSG00000120265|ENST00000464889|PCMT1;nc|ENSG00000120265|P22061-2|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	ENSG00000120265|ENST00000464889|PCMT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	483.8275146484375	2	483.826569	965.638586	-0.044518	-2.1539E-05	-0.5307	-0.00025677	-0.57522	-0.00027831	483.82619225165473	78.201	1.4285	75.385	75.116	76.544	-2.8165					74	29	4	0	0	0	0.22961	1	6291	6291		71.296	11.002	1	889620			31114	3425	25601	25626	34345	34345					0.1543922033616809
LKPGQEPAPA	10	Unmodified	_LKPGQEPAPA_					0	0	0		ENSG00000142959|ENST00000372207|BEST4	ENSG00000142959|ENST00000372207|BEST4	ENSG00000142959|ENST00000372207|BEST4	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.21380615234375	2	504.279649	1006.54475	2.2211	0.0011201	-1.0032	-0.00050589	1.2179	0.00061416	504.7796865729015	95.109	0.21034	95.109	95.033	95.244	0					7	4	2	0	0	0	0.026553	1	10386	10386		56.721	0	1	117680			31115	5004	25602	25627	34346	34346					0.041734564432204024
LKPIIKVLP	9	Unmodified	_LKPIIKVLP_					0	0	0		ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-2|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.W1001Afs*3|1|0.12|ENSG00000175216|chr11:46770973-46770974|AG/-|frameshift_variant	ENSG00000175216|ENST00000529230|CKAP5	ENSG00000175216|ENST00000529230|CKAP5	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.843994140625	2	510.862621	1019.71069	0.023384	1.1946E-05	-0.48821	-0.00024941	-0.46483	-0.00023746	510.8611088128921	123.36	0.39312	123.14	122.95	123.35	-0.2214					11	7	2	0	0	0	0.027462	1	11955	11955		17.365	0	1	8679.8			31116	7525	25603	25628	34347	34347					0.2016213468988326
LKPILTKYS	9	Unmodified	_LKPILTKYS_					0	0	0		ENSG00000196549|ENST00000360490|MME	ENSG00000196549|ENST00000360490|MME	ENSG00000196549|ENST00000360490|MME	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.778564453125	2	531.831517	1061.64848	-0.97773	-0.00051998	-1.7871	-0.00095044	-2.7648	-0.0014704	532.3326826424292	65.609	0.2403	65.609	65.507	65.748	0					8	5	2	0	0	0	0.027462	1	6037	6037		44.117	8.9161	1	64553			31117	8624	25604	25629	34348	34348					0.12012363550888949
LKPIPPLNLE	10	Unmodified	_LKPIPPLNLE_					0	0	0		ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.351318359375	2	567.350074	1132.6856	-0.031995	-1.8153E-05	0.33001	0.00018723	0.29801	0.00016908	567.3500683029782	124.24	1.2645	122.85	122.22	123.49	-1.3908					52	24	3	0	0	0	0.49558	1	11758	11758		54.776	5.2403	1	71902			31118	4259	25605	25630	34349	34349					0.12456035096647611
LKPIPPLNLE	10	Unmodified	_LKPIPPLNLE_					0	0	0		ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	MULTI-MATCH	OvCa9_classI_Rep2	2		2	567.350074	1132.6856	-0.25745	-0.00014606	0.43129	0.00024469	0.17384	9.8629E-05	567.3500741703531	122.99	1.2324	122.77	122.31	123.55	-0.21803	-0.057248	0.00052195	NaN	54.776	49	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58039			31119	4259	25605	25630							0.12456035096647611
LKPIPPLNLE	10	Unmodified	_LKPIPPLNLE_					0	0	0		ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	ENSG00000134107|ENST00000256495|BHLHE40	MULTI-MATCH	OvCa9_classI_Rep3	3		2	567.350074	1132.6856	1.2746	0.00072317	-0.92536	-0.000525	0.34928	0.00019817	567.3493933656425	123.9	1.3408	122.87	122.26	123.6	-1.0377	0.038197	-0.0010174	NaN	54.776	52	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71778			31120	4259	25605	25630							0.12456035096647611
LKPKFFIPIH	10	Unmodified	_LKPKFFIPIH_					0	0	0		tr|A0A553SNU9|A0A553SNU9_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	tr|A0A553SNU9|A0A553SNU9_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	tr|A0A553SNU9|A0A553SNU9_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	413.9267578125	3	413.92526	1238.75395	1.8213	0.00075387	0.71053	0.0002941	2.5318	0.001048	413.9254636200789	66.621	1.1121	63.711	63.454	64.566	-2.9107					51	21	3	0	0	0	0.77039	1	2780	2780		22.58	0.018069	1	150460			31121	33964	25606	25631	34350	34350					0.1441232446718459
LKPKMVKVL	9	Unmodified	_LKPKMVKVL_					0	0	0		ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.2747802734375	2	528.354105	1054.69366	0.86027	0.00045453	-1.7498	-0.0009245	-0.88951	-0.00046998	528.3531957073066	154.23	1.0995	154.23	153.83	154.93	0					29	21	2	0	0	0	0.027462	1	18138	18138		21.96	0	1	35258			31122	3901	25607	25632	34351	34351					0.16849890812432022
LKPKPKSDS	9	Unmodified	_LKPKPKSDS_					0	0	0		CENPJ|p.E961Vfs*3|1|0.06|ENSG00000151849|chr13:24899528-24899529|-/A|frameshift_variant;CENPJ|p.E961Rfs*3|1|0.04|ENSG00000151849|chr13:24899529-24899530|-/T|frameshift_variant;nc|ENSG00000151849|Q9HC77-2|CENPJ;ENSG00000151849|ENST00000381884|CENPJ	CENPJ|p.E961Vfs*3|1|0.06|ENSG00000151849|chr13:24899528-24899529|-/A|frameshift_variant	CENPJ|p.E961Vfs*3|1|0.06|ENSG00000151849|chr13:24899528-24899529|-/A|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.3177185058594	2	500.295299	998.576045	-0.59623	-0.00029829	-3.8609	-0.0019316	-4.4571	-0.0022299	500.29380064212904	39.635	0.7947	36.686	36.373	37.168	-2.9489					35	15	3	0	0	0	0.027462	1	1660	1660		19.997	0	1	46091			31123	222	25608	25633	34352	34352					0.07670029477321805
LKPLEVNAIKK	11	Unmodified	_LKPLEVNAIKK_					0	0	0		ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-SECPEP	OvCa9_classI_Rep2	2	626.3938598632812	2	626.903005	1251.79146	-5.6652	-0.0035516	-2.8293	-0.0017737	-8.4946	-0.0053253	626.9020234753483	163.21	0.21982	162.98	162.81	163.03	-0.22696					9	7	2	0	0	0	0.026289	1	16620	16620		13.454	3.1888	1	23633			31124	7547	25609	25634	34353	34353					0.1756337094209357
LKPLKAVT	8	Unmodified	_LKPLKAVT_					0	0	0			REV__tr|A0A553SFS7|A0A553SFS7_NIACIRegulatoryproteinMsrROS=NialliacirculansOX=1397GN=CEQ21_09425PE=3SV=1	REV__tr|A0A553SFS7|A0A553SFS7_NIACIRegulatoryproteinMsrROS=NialliacirculansOX=1397GN=CEQ21_09425PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	435.2655029296875	2	435.294571	868.574589	0.46748	0.00020349	0.3601	0.00015675	0.82758	0.00036024	435.29450776372994	71.23	0.27995	71.23	71.109	71.389	0					9	6	2	0	0	0	0.028476	1	6899	6899		31.955	1.4512	1	273510	+		31125	29617	25610	25635	34354	34354					0.13504440179224275
LKPLMKQLK	9	Unmodified	_LKPLMKQLK_					0	0	0			REV__nc|ENSG00000198901|O43663-3|PRC1	REV__nc|ENSG00000198901|O43663-3|PRC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.2808227539062	2	549.857012	1097.69947	1.0559	0.00058057	-2.1187	-0.001165	-1.0628	-0.0005844	549.8557610450725	144.7	0.63165	144.7	144.45	145.08	0					17	12	2	0	0	0	0.027462	1	16910	16910		10.866	0.6003	1	42313	+		31126	23090	25611	25636	34355	34355					0.1545298932408059
LKPLTGRTH	9	Unmodified	_LKPLTGRTH_					0	0	0		ENSG00000007376|ENST00000007264|RPUSD1	ENSG00000007376|ENST00000007264|RPUSD1	ENSG00000007376|ENST00000007264|RPUSD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.8085632324219	2	511.808908	1021.60326	0.46078	0.00023583	-1.0122	-0.00051806	-0.55142	-0.00028222	511.80831442868	37.858	1.6886	34.966	34.541	36.23	-2.8925					89	33	4	0	0	0	0.55588	1	1419	1419		37.159	5.2042	1	929280			31127	901	25612	25637	34356	34356					0.09332557808374986
LKPNVSYET	9	Unmodified	_LKPNVSYET_					0	0	0		tr|A0A7D6VSV4|A0A7D6VSV4_9CLOTDNA/RNAnon-specificendonucleaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07830PE=4SV=1	tr|A0A7D6VSV4|A0A7D6VSV4_9CLOTDNA/RNAnon-specificendonucleaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07830PE=4SV=1	tr|A0A7D6VSV4|A0A7D6VSV4_9CLOTDNA/RNAnon-specificendonucleaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07830PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.3121948242188	2	525.776939	1049.53933	0.93267	0.00049038	2.3687	0.0012454	3.3013	0.0017358	525.7777163045167	131.19	0.66238	131.19	130.91	131.58	0					16	13	2	0	0	0	0.027462	1	15201	15201		23.042	5.6775	1	48925			31128	35062	25613	25638	34357	34357					0.016537328607682866
LKPPKFVQSR	10	Unmodified	_LKPPKFVQSR_					0	0	0		ENSG00000185085|ENST00000330574|INTS5	ENSG00000185085|ENST00000330574|INTS5	ENSG00000185085|ENST00000330574|INTS5	MULTI-SECPEP	OvCa99_classI_Rep5	1	599.8685302734375	2	600.36659	1198.71863	2.3284	0.0013979	4.0876	0.0024541	6.4161	0.003852	600.3692429881114	79.922	0.68307	79.922	79.509	80.192	0					26	16	2	0	0	0	0.026803	1	8182	8182		14.865	0	1	2131600			31129	8224	25614	25639	34358	34358					0.1272166193934936
LKPPMMIR	8	Unmodified	_LKPPMMIR_					0	0	0			REV__nc|ENSG00000153936|Q7LGA3-3|HS2ST1	REV__nc|ENSG00000153936|Q7LGA3-3|HS2ST1	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.27783203125	2	493.287908	984.561264	1.9992	0.00098617	-1.9067	-0.00094055	0.09249	4.5624E-05	493.28668016399575	76.385	0.44007	76.385	76.199	76.639	0					15	10	2	0	0	0	0.028476	1	7678	7678		18.324	5.3652	1	522390	+		31130	20354	25615	25640	34359	34359					0.06836542803978318
LKPPRRYR	8	Unmodified	_LKPPRRYR_					0	0	0		ENST00000531579.5_1_11:62564685-62568887:-|nuORF	ENST00000531579.5_1_11:62564685-62568887:-|nuORF	ENST00000531579.5_1_11:62564685-62568887:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.2978515625	2	543.338167	1084.66178	-0.24877	-0.00013517	-4.158	-0.0022592	-4.4068	-0.0023944	543.3357796008194	23.067	0.1524	23.067	22.94	23.093	0					4	2	2	0	0	0	0.028476	1	273	273		25.45	4.9683	1	27254			31131	13310	25616	25641	34360	34360					0.12283659173476735
LKPPSNVVSPL	11	Unmodified	_LKPPSNVVSPL_					0	0	0		nc|ENSG00000095319|Q5SRE5-2|NUP188;ENSG00000095319|ENST00000372577|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	nc|ENSG00000095319|Q5SRE5-2|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	MULTI-MSMS	OvCa9_classI_Rep3	3	575.843505859375	2	575.845156	1149.67576	-4.018	-0.0023138	0.54994	0.00031668	-3.4681	-0.0019971	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.69099	1	12181	12181		32.751	2.2469	1	445630			31132	1924	25617	25642	34361	34361					0.10690847091291289
LKPPWKSP	8	Unmodified	_LKPPWKSP_					0	0	0		ENST00000447667.2_1_12:863452-922820:+|nuORF	ENST00000447667.2_1_12:863452-922820:+|nuORF	ENST00000447667.2_1_12:863452-922820:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.7835998535156	2	476.78437	951.554188	-0.71651	-0.00034162	-3.8732	-0.0018467	-4.5897	-0.0021883	476.78251062896163	43.464	1.7317	40.457	40.115	41.847	-3.0074					59	33	2	0	0	0	0.62474	1	2110	2110		58.782	2.0609	1	1543100			31133	12009	25618	25643	34362	34362					0.07647269519418387
LKPQKDLSP	9	Unmodified	_LKPQKDLSP_					0	0	0		ENST00000279392.7_1_16:30007232-30007604:-|nuORF	ENST00000279392.7_1_16:30007232-30007604:-|nuORF	ENST00000279392.7_1_16:30007232-30007604:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	513.302734375	2	513.303124	1024.5917	2.3078	0.0011846	-0.34055	-0.00017481	1.9673	0.0010098	513.3028835147137	102.25	2.2361	102.25	101.23	103.47	0					135	52	5	0	0	0	0.11471	1	11424	11424		93.195	7.836	1	13218000			31134	10040	25619	25644	34363	34363					0.0803831599437217
LKPQLSLQD	9	Unmodified	_LKPQLSLQD_					0	0	0		nc|ENSG00000171495|Q7Z745-2|MROH2B;ENSG00000171495|ENST00000399564|MROH2B	nc|ENSG00000171495|Q7Z745-2|MROH2B	nc|ENSG00000171495|Q7Z745-2|MROH2B	MULTI-MSMS	OvCa9_classI_Rep2	2	521.3004150390625	2	521.300581	1040.58661	0.72816	0.00037959	-1.1456	-0.00059719	-0.41741	-0.0002176	521.2998997785178	81.654	1.6566	80.005	79.614	81.271	-1.6485					76	31	3	0	0	0	0.22961	1	6954	6954		71.296	2.5089	1	726440			31135	7205	25620	25645	34364	34364					0.06794012131740601
LKPQRVQFQSR	11	Unmodified	_LKPQRVQFQSR_					0	0	0		nc|ENSG00000164485|Q969J5-3|IL22RA2;nc|ENSG00000164485|Q969J5-2|IL22RA2;ENSG00000164485|ENST00000296980|IL22RA2	nc|ENSG00000164485|Q969J5-3|IL22RA2	nc|ENSG00000164485|Q969J5-3|IL22RA2	MULTI-MSMS	OvCa9_classI_Rep2	2	462.93682861328125	3	462.936999	1385.78917	0.079191	3.666E-05	-0.90827	-0.00042047	-0.82908	-0.00038381	462.9367014144655	44.408	4.3763	41.698	41.303	45.679	-2.7097					263	87	6	0	0	0	0.5614	3	2535	2535;2547;2553		48.188	8.3148	1	4456400			31136	6462	25621	25646	34365;34366;34367	34365					0.1117033525702027
LKPQRVQFQSR	11	Unmodified	_LKPQRVQFQSR_					0	0	0		nc|ENSG00000164485|Q969J5-3|IL22RA2;nc|ENSG00000164485|Q969J5-2|IL22RA2;ENSG00000164485|ENST00000296980|IL22RA2	nc|ENSG00000164485|Q969J5-3|IL22RA2	nc|ENSG00000164485|Q969J5-3|IL22RA2	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.9375915527344	3	462.936999	1385.78917	-1.4875	-0.00068863	0.6489	0.0003004	-0.83863	-0.00038823	462.9373949501134	44.694	4.8335	41.655	41.207	46.04	-3.0385					274	93	6	0	0	0	0.43443	4	2222	2222;2233;2245;2281		58.63	9.1638	1	4600900			31137	6462	25621	25646	34368;34369;34370;34371	34368					0.1117033525702027
LKPRMLSP	8	Oxidation (M)	_LKPRM(Oxidation (M))LSP_		LKPRM(1)LSP		LKPRM(71)LSP	0	0	1			REV__tr|A0A553SIA7|A0A553SIA7_NIACISpoVRfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_14525PE=4SV=1	REV__tr|A0A553SIA7|A0A553SIA7_NIACISpoVRfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_14525PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	479.2798156738281	2	479.281137	956.547722	-0.31076	-0.00014894	-3.1843	-0.0015262	-3.4951	-0.0016751	479.2797349881233	95.486	3.0134	94.457	93.134	96.147	-1.0281					131	60	4	0	0	0	0.56195	1	8641	8641		71.296	7.9894	1	2203400	+		31138	29877	25622	25647	34372	34372		655			0.06771008296391301
LKPRVVVI	8	Unmodified	_LKPRVVVI_					0	0	0			REV__tr|A0A7D6VPU7|A0A7D6VPU7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00365PE=4SV=1	REV__tr|A0A7D6VPU7|A0A7D6VPU7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00365PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	462.3244323730469	2	462.323663	922.632772	-1.0288	-0.00047566	0.64098	0.00029634	-0.38786	-0.00017932	462.32384863852093	82.511	2.5875	80.215	79.684	82.272	-2.2963					118	53	4	0	0	0	0.73288	1	4670	4670		35.201	3.6218	1	920910	+		31139	31278	25623	25648	34373	34373					0.16836121824496786
LKPSIKDN	8	Unmodified	_LKPSIKDN_					0	0	0			REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.3579652635712427|0.3175433071941228|2.1|429.0|38|2|sense	REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.3579652635712427|0.3175433071941228|2.1|429.0|38|2|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.2410583496094	2	457.768917	913.523281	-0.9007	-0.00041231	0.49128	0.00022489	-0.40942	-0.00018742	457.7692700208889	53.59	1.0744	50.38	50.095	51.169	-3.2104					43	20	4	0	0	0	0.028476	1	3248	3248		20.947	5.3051	1	87820	+		31140	28429	25624	25649	34374	34374					0.06306071414508096
LKPSLPLQN	9	Unmodified	_LKPSLPLQN_					0	0	0		MAML3|p.G870Efs*5|1|0.04|ENSG00000196782|chr4:139720133-139720133|T/-|frameshift_variant;ENSG00000196782|ENST00000509479|MAML3	MAML3|p.G870Efs*5|1|0.04|ENSG00000196782|chr4:139720133-139720133|T/-|frameshift_variant	MAML3|p.G870Efs*5|1|0.04|ENSG00000196782|chr4:139720133-139720133|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	505.3066101074219	2	505.305667	1008.59678	2.2754	0.0011498	0.10294	5.2014E-05	2.3784	0.0012018	505.3054802408114	95.37	2.9617	95.37	95.033	97.995	0					102	69	3	0	0	0	0.1149	1	10418	10418		93.143	2.5424	1	1235000			31141	8650	25625	25650	34375	34375					0.09282619856981
LKPVAGPVEE	10	Unmodified	_LKPVAGPVEE_					0	0	0			REV__ENST00000462001.1_1_3:50327954-50329668:-|nuORF	REV__ENST00000462001.1_1_3:50327954-50329668:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	519.7926635742188	2	519.795132	1037.57571	1.5307	0.00079564	-4.1853	-0.0021755	-2.6546	-0.0013798	519.7927708482009	121.53	4.9018	120.5	119.85	124.76	-1.0286					197	93	4	0	0	0	0.41408	1	9340	9340		66.429	0.6261	1	827300	+		31142	25564	25626	25651	34376	34376					0.05842609757473838
LKPVIKSQP	9	Unmodified	_LKPVIKSQP_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.77972412109375	2	505.32386	1008.63317	-1.5787	-0.00079776	1.1893	0.00060096	-0.38946	-0.0001968	505.3245987088916	101.36	0.5441	100.6	100.37	100.91	-0.76401					19	10	2	0	0	0	0.027462	1	9312	9312		24.519	9.8551	1	18991			31143	5795	25627	25652	34377	34377					0.12919496753704607
LKPVSENDLAH	11	Unmodified	_LKPVSENDLAH_					0	0	0		tr|A0A553SFX5|A0A553SFX5_NIACIHlyC/CorCfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_09730PE=3SV=1	tr|A0A553SFX5|A0A553SFX5_NIACIHlyC/CorCfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_09730PE=3SV=1	tr|A0A553SFX5|A0A553SFX5_NIACIHlyC/CorCfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_09730PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.26904296875	3	408.21906	1221.63535	0.59292	0.00024204	0.539	0.00022003	1.1319	0.00046207	408.21907235296976	42.351	0.46547	42.351	42.199	42.665	0					19	10	2	0	0	0	0.025377	1	2754	2754		41.08	15.017	1	110850			31144	33088	25628	25653	34378	34378					0.03339880700855247
LKQAGFKESD	10	Unmodified	_LKQAGFKESD_					0	0	0		nc|ENSG00000112339|Q9Y450-4|HBS1L;ENSG00000112339|ENST00000367837|HBS1L	nc|ENSG00000112339|Q9Y450-4|HBS1L	nc|ENSG00000112339|Q9Y450-4|HBS1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.8475952148438	2	561.793121	1121.57169	1.449	0.00081403	-3.6559	-0.0020538	-2.2069	-0.0012398	561.7929764440839	157.75	0.15326	157.75	157.65	157.8	0					4	2	2	0	0	0	0.027118	1	18482	18482		25.574	3.6142	1	7430.1			31145	2900	25629	25654	34379	34379					0.0157652026375672
LKQAKLGYK	9	Unmodified	_LKQAKLGYK_					0	0	0			REV__XRCC5-VWA3B|1|fusion	REV__XRCC5-VWA3B|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	524.8291625976562	2	524.829309	1047.64407	0.16407	8.6107E-05	-3.9803	-0.002089	-3.8162	-0.0020028	524.8271106271505	161.44	1.2185	161.44	161.06	162.28	0					81	23	5	0	0	0	0.61208	1	18908	18908		30.504	1.3541	1	1526900	+		31146	21390	25630	25655	34380	34380					0.12214899127957324
LKQAVEFPKSN	11	Unmodified	_LKQAVEFPKSN_					0	0	0		tr|A0A7D6ZHP0|A0A7D6ZHP0_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03685PE=4SV=1	tr|A0A7D6ZHP0|A0A7D6ZHP0_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03685PE=4SV=1	tr|A0A7D6ZHP0|A0A7D6ZHP0_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03685PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	630.8506469726562	2	630.85097	1259.68739	-4.2078	-0.0026545	2.7098	0.0017095	-1.4981	-0.00094505	630.852496591045	154.55	1.1406	153.09	152.8	153.94	-1.4517					82	27	4	0	0	0	0.61983	1	15313	15313		42.864	11.334	1	266360			31147	35583	25631	25656	34381	34381					0.06793044114624536
LKQAVEFPKSN	11	Unmodified	_LKQAVEFPKSN_					0	0	0		tr|A0A7D6ZHP0|A0A7D6ZHP0_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03685PE=4SV=1	tr|A0A7D6ZHP0|A0A7D6ZHP0_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03685PE=4SV=1	tr|A0A7D6ZHP0|A0A7D6ZHP0_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03685PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	630.85097	1259.68739	-4.989	-0.0031473	3.3216	0.0020955	-1.6674	-0.0010519	630.8528826592393	154.16	1.3015	153.15	152.7	154	-1.0076	0.029423	0.00026179	NaN	42.864	76	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219720			31148	35583	25631	25656							0.06793044114624536
LKQFLKSKSR	10	Unmodified	_LKQFLKSKSR_					0	0	0			REV__L1PA8A_dup160|chr1:247133953-247136664:+|1.5135014545884105|0.4971293307696565|1.61|429.0|41|2|sense	REV__L1PA8A_dup160|chr1:247133953-247136664:+|1.5135014545884105|0.4971293307696565|1.61|429.0|41|2|sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	413.2408142089844	3	412.25919	1233.75574	2.0859	0.00085995	0.0079641	3.2833E-06	2.0939	0.00086323	412.5936279020869	64.941	0.96075	61.948	61.596	62.557	-2.9933					34	18	3	0	0	0	0.027117	1	2533	2533		21.686	10.589	1	14811	+		31149	28583	25632	25657	34382	34382					0.14821333485133437
LKQGKKFRH	9	Unmodified	_LKQGKKFRH_					0	0	0			REV__ENSG00000177602|ENST00000325418|HASPIN	REV__ENSG00000177602|ENST00000325418|HASPIN	MULTI-MSMS	OvCa99_classI_Rep5	1	571.3504028320312	2	571.351274	1140.688	-0.8609	-0.00049188	0.51533	0.00029443	-0.34558	-0.00019745	571.351364838399	26.221	0.40003	26.221	26.092	26.492	0					15	7	3	0	0	0	0.67509	1	668	668		23.042	0	1	107360	+		31150	22017	25633	25658	34383	34383					0.12327928344984684
LKQGKQLK	8	Unmodified	_LKQGKQLK_					0	0	0			REV__ENST00000464348.5_1_1:201816704-201817560:+|nuORF	REV__ENST00000464348.5_1_1:201816704-201817560:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	471.80841064453125	2	471.808377	941.6022	-0.87585	-0.00041324	0.67117	0.00031666	-0.20469	-9.6574E-05	471.8086169975254	27.566	0.55051	27.566	27.39	27.941	0					26	10	4	0	0	0	0.57878	1	820	820		68.485	8.1907	1	664160	+		31151	26147	25634	25659	34384	34384					0.12906343439465218
LKQGKQLK	8	Unmodified	_LKQGKQLK_					0	0	0			REV__ENST00000464348.5_1_1:201816704-201817560:+|nuORF	REV__ENST00000464348.5_1_1:201816704-201817560:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	471.808377	941.6022	-0.87585	-0.00041324	0.67117	0.00031666	-0.20469	-9.6574E-05	471.8086169975254	27.566	0.55051	27.566	27.39	27.941	0	0	0	NaN	68.485	26	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	664160	+		31152	26147	25634	25659							0.12906343439465218
LKQGPEKKII	10	Unmodified	_LKQGPEKKII_					0	0	0			REV__nc|ENSG00000010030|Q9Y603-8|ETV7	REV__nc|ENSG00000010030|Q9Y603-8|ETV7	MULTI-MSMS	OvCa9_classI_Rep3	3	577.3668823242188	2	577.368798	1152.72304	-7.5995	-0.0043877	4.078	0.0023545	-3.5215	-0.0020332	577.3709835310325	161.44	1.2472	160.07	159.69	160.93	-1.3692					76	25	4	0	0	0	0.73378	1	14015	14015		26.693	2.1737	1	379650	+		31153	16472	25635	25660	34385	34385					0.1527912636227029
LKQHILLPQIF	11	Unmodified	_LKQHILLPQIF_					0	0	0		ENST00000393445.7_1_2:100065840-100065927:-|nuORF	ENST00000393445.7_1_2:100065840-100065927:-|nuORF	ENST00000393445.7_1_2:100065840-100065927:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	449.75341796875	3	450.614974	1348.82309	-0.26008	-0.0001172	-0.89885	-0.00040503	-1.1589	-0.00052223	450.6145816557745	39.588	0.42199	39.588	39.376	39.798	0					17	9	2	0	0	0	0.026277	1	2341	2341		17.833	0.6664	1	158480			31154	11247	25636	25661	34386	34386					0.16263363696066335
LKQHRLLSIM	10	Unmodified	_LKQHRLLSIM_					0	0	0			REV__ENST00000257749.8_2_6:90638105-90638159:-|nuORF	REV__ENST00000257749.8_2_6:90638105-90638159:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8696899414062	2	619.873725	1237.7329	-3.6059	-0.0022352	-3.3723	-0.0020904	-6.9782	-0.0043256	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.74374	1	12882	12882		25.574	2.5316	1	664560	+		31155	23905	25637	25662	34387	34387					0.12353991096006212
LKQKANQL	8	Unmodified	_LKQKANQL_					0	0	0			REV__CON__Q6IFZ6	REV__CON__Q6IFZ6	MULTI-MSMS	OvCa99_classI_Rep5	1	471.7903137207031	2	471.790184	941.565815	-0.43722	-0.00020628	0.11438	5.3965E-05	-0.32284	-0.00015231	471.7901013679122	42.433	0.68336	42.433	42.199	42.883	0					35	15	4	0	0	0	0.2589	1	2725	2725		114.59	0	1	2359300	+	+	31156	16218	25638	25663	34388	34388					0.0926946654275298
LKQKANQL	8	Unmodified	_LKQKANQL_					0	0	0			REV__CON__Q6IFZ6	REV__CON__Q6IFZ6	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	471.790184	941.565815	-0.31594	-0.00014906	-0.45015	-0.00021237	-0.76609	-0.00036143	471.7903591303024	45.538	0.52351	42.5	42.281	42.805	-3.0385	0.033156	-0.00045866	NaN	114.59	20	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46754	+	+	31157	16218	25638	25663							0.0926946654275298
LKQKETAFY	9	Unmodified	_LKQKETAFY_					0	0	0		tr|A0A7D6VXF4|A0A7D6VXF4_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12650PE=4SV=1	tr|A0A7D6VXF4|A0A7D6VXF4_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12650PE=4SV=1	tr|A0A7D6VXF4|A0A7D6VXF4_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12650PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.3081665039062	2	564.308406	1126.60226	1.4941	0.00084313	-1.7569	-0.00099143	-0.26281	-0.00014831	564.3073525636003	122.58	1.342	121.21	120.76	122.1	-1.3666					64	26	5	0	0	0	0.46356	1	11593	11593		45.972	3.4978	1	439730			31158	35278	25639	25664	34389	34389					0.04402298648801661
LKQKVGLPVP	10	Unmodified	_LKQKVGLPVP_					0	0	0			REV__ENSG00000171487|ENST00000390649|NLRP5	REV__ENSG00000171487|ENST00000390649|NLRP5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.8312377929688	2	539.852784	1077.69102	-3.0252	-0.0016331	2.2399	0.0012092	-0.78527	-0.00042393	539.8541014618125	126.39	1.0299	124.97	124.43	125.46	-1.4143					29	20	2	0	0	0	0.027117	1	11965	11965		10.866	0	1	32354	+		31159	21616	25640	25665	34390	34390					0.15527758679127146
LKQKVTNLLNP	11	Unmodified	_LKQKVTNLLNP_					0	0	0			REV__ENSG00000168002|ENST00000301788|POLR2G	REV__ENSG00000168002|ENST00000301788|POLR2G	MULTI-SECPEP	OvCa9_classI_Rep3	3	422.91973876953125	3	423.2626	1266.76597	-0.023738	-1.0047E-05	-1.2087	-0.0005116	-1.2324	-0.00052164	423.26189730442144	75.859	1.9683	73.488	73.008	74.976	-2.3715					85	37	4	0	0	0	0.025319	1	3873	3873		47.228	2.5882	1	107350	+		31160	21332	25641	25666	34391	34391					0.14325896419700257
LKQKVTNLLNP	11	Unmodified	_LKQKVTNLLNP_					0	0	0			REV__ENSG00000168002|ENST00000301788|POLR2G	REV__ENSG00000168002|ENST00000301788|POLR2G	MULTI-MATCH	OvCa9_classI_Rep2	2		3	423.2626	1266.76597	-0.49456	-0.00020933	0.16884	7.1465E-05	-0.32572	-0.00013786	423.26260177202704	75.45	2.3387	73.596	73.167	75.506	-1.854	0.045446	0.00059022	NaN	47.228	70	44	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156490	+		31161	21332	25641	25666							0.14325896419700257
LKQLIADV	8	Unmodified	_LKQLIADV_					0	0	0		ENSG00000204599|ENST00000396551|TRIM39;nc|ENSG00000204599|Q9HCM9|TRIM39	ENSG00000204599|ENST00000396551|TRIM39	ENSG00000204599|ENST00000396551|TRIM39	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.6773986816406	2	450.28166	898.548768	0.90071	0.00040557	-1.8209	-0.0008199	-0.92016	-0.00041433	450.2810623954909	109.65	1.0531	107.95	107.6	108.65	-1.7016					43	19	3	0	0	0	0.028476	1	10104	10104		56.721	7.2795	1	53260			31162	9007	25642	25667	34392	34392					0.09543545936935516
LKQLIADV	8	Unmodified	_LKQLIADV_					0	0	0		ENSG00000204599|ENST00000396551|TRIM39;nc|ENSG00000204599|Q9HCM9|TRIM39	ENSG00000204599|ENST00000396551|TRIM39	ENSG00000204599|ENST00000396551|TRIM39	MULTI-MATCH	OvCa9_classI_Rep2	2		2	450.28166	898.548768	2.6109	0.0011756	-6.9291	-0.00312	-4.3182	-0.0019444	450.2802773287459	107.78	0.97288	107.47	107.12	108.09	-0.30836	-0.28811	-0.0042357	NaN	47.657	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45634			31163	9007	25642	25667							0.09543545936935516
LKQLIADV	8	Unmodified	_LKQLIADV_					0	0	0		ENSG00000204599|ENST00000396551|TRIM39;nc|ENSG00000204599|Q9HCM9|TRIM39	ENSG00000204599|ENST00000396551|TRIM39	ENSG00000204599|ENST00000396551|TRIM39	MULTI-MATCH	OvCa9_classI_Rep3	3		2	450.28166	898.548768	0.039961	1.7993E-05	-1.007	-0.00045343	-0.96702	-0.00043543	450.2814731270258	109.05	1.0468	107.85	107.51	108.56	-1.1978	0.094046	0.0010975	NaN	47.657	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48971			31164	9007	25642	25667							0.09543545936935516
LKQLNHPNI	9	Unmodified	_LKQLNHPNI_					0	0	0		nc|ENSG00000119408|Q9HC98-3|NEK6;ENSG00000119408|ENST00000320246|NEK6;nc|ENSG00000119408|Q9HC98-4|NEK6;nc|ENSG00000119408|Q9HC98-2|NEK6	nc|ENSG00000119408|Q9HC98-3|NEK6	nc|ENSG00000119408|Q9HC98-3|NEK6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.8624877929688	2	538.81419	1075.61383	2.7938	0.0015053	-3.1233	-0.0016829	-0.32955	-0.00017756	538.812823009385	133.43	0.34341	131.91	131.61	131.95	-1.5257					9	6	2	0	0	0	0.027462	1	12869	12869		30.504	0	1	19864			31165	14983	25643	25668	34393	34393					0.07904540462777732
LKQNSSLVL	9	Unmodified	_LKQNSSLVL_					0	0	0			REV__nc|ENSG00000162711|Q96P20-2|NLRP3	REV__nc|ENSG00000162711|Q96P20-2|NLRP3	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.3042297363281	2	501.303124	1000.5917	-1.3141	-0.00065878	0.19664	9.8577E-05	-1.1175	-0.0005602	501.3030422318759	100.83	2.3031	98.56	97.726	100.03	-2.2665					81	45	4	0	0	0	0.28934	1	9024	9024		64.207	0.901	1	392290	+		31166	20767	25644	25669	34394	34394					0.09142315994370165
LKQQLLLLNG	10	Unmodified	_LKQQLLLLNG_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;SYNE1|p.A5284Rfs*31|1|0.11|ENSG00000131018|chr6:152323546-152323547|-/C|frameshift_variant;SYNE1|p.T4511Lfs*10|1|0.03|ENSG00000131018|chr6:152331155-152331155|G/-|frameshift_variant;SYNE1|p.R3674Tfs*53|1|0.12|ENSG00000131018|chr6:152353650-152353651|-/ATAATTGCTTCAAAAATTTGAG|frameshift_variant;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;nc|ENSG00000131018|Q8NF91-6|SYNE1;SYNE1|p.V2560Dfs*2|1|0.09|ENSG00000131018|chr6:152395549-152395550|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-5|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	OvCa9_classI_Rep4_	4	570.3599243164062	2	570.360973	1138.70739	-3.6448	-0.0020789	-0.079296	-4.5227E-05	-3.7241	-0.0021241	570.3607585251723	152.95	1.1827	151.52	151.24	152.42	-1.435					78	29	4	0	0	0	0.76627	1	15162	15162		23.042	2.0956	1	189880			31167	4036	25645	25670	34395	34395					0.14358839845226612
LKQQMNPK	8	Unmodified	_LKQQMNPK_					0	0	0		ENST00000573618.5_1_16:11933583-11933670:-|nuORF	ENST00000573618.5_1_16:11933583-11933670:-|nuORF	ENST00000573618.5_1_16:11933583-11933670:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.7916259765625	2	493.776219	985.537886	-0.47114	-0.00023264	1.6373	0.00080846	1.1662	0.00057582	493.7770304770925	35.452	0.27402	35.452	35.246	35.52	0					7	5	2	0	0	0	0.028476	1	1778	1778		33.516	0	1	30817			31168	13922	25646	25671	34396	34396					0.0445382029100756
LKQQVDELT	9	Unmodified	_LKQQVDELT_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.8172607421875	2	537.295496	1072.57644	0.079584	4.276E-05	1.1651	0.00062602	1.2447	0.00066878	537.2960076268943	31.689	0.29777	31.689	31.559	31.857	0					11	5	3	0	0	0	0.027462	1	1342	1342		27.882	10.517	1	118020			31169	15096	25647	25672	34397	34397					0.04305404406500202
LKQRLHEME	9	Unmodified	_LKQRLHEME_					0	0	0			REV__ENST00000547877.5_1_12:51442859-51453215:+|nuORF	REV__ENST00000547877.5_1_12:51442859-51453215:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	592.3024291992188	2	592.31624	1182.61793	-1.0295	-0.00060978	1.4089	0.00083451	0.37942	0.00022473	592.3171542973363	81.907	0.70534	79.611	79.233	79.938	-2.2963					17	13	2	0	0	0	0.027462	1	4573	4573		21.96	0	1	35301	+		31170	27436	25648	25673	34398	34398					0.03392261894191506
LKQSASRWR	9	Unmodified	_LKQSASRWR_					0	0	0		ENST00000529704.5_1_11:67119161-67119332:-|nuORF	ENST00000529704.5_1_11:67119161-67119332:-|nuORF	ENST00000529704.5_1_11:67119161-67119332:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	566.326171875	2	566.322714	1130.63087	-0.32453	-0.00018379	3.6681	0.0020773	3.3435	0.0018935	566.3246622089753	50.663	1.7288	50.663	49.856	51.585	0					105	39	4	0	0	0	0.37135	1	3900	3900		54.776	6.8607	1	1570500			31171	13278	25649	25674	34399	34399					0.07078461068613251
LKQSQGILN	9	Unmodified	_LKQSQGILN_					0	0	0		nc|ENSG00000214367|Q68CZ6-2|HAUS3;ENSG00000214367|ENST00000443786|HAUS3	nc|ENSG00000214367|Q68CZ6-2|HAUS3	nc|ENSG00000214367|Q68CZ6-2|HAUS3	MULTI-MSMS	OvCa99_classI_Rep5	1	500.79034423828125	2	500.792924	999.571294	-0.68414	-0.00034261	0.93468	0.00046808	0.25055	0.00012547	500.7931324729	36.187	0.50315	36.187	36.029	36.532	0					34	10	4	0	0	0	0.51865	1	1884	1884		40.778	1.5253	1	529530			31172	9173	25650	25675	34400	34400					0.07149145334574314
LKQTTYFN	8	Unmodified	_LKQTTYFN_					0	0	0			REV__nc|ENSG00000102271|Q9C0H6-2|KLHL4	REV__nc|ENSG00000102271|Q9C0H6-2|KLHL4	MULTI-MSMS	OvCa9_classI_Rep2	2	507.763427734375	2	507.766374	1013.5182	-2.8803	-0.0014625	-1.5782	-0.00080136	-4.4585	-0.0022639	507.76550943835366	36.279	0.83902	33.569	33.35	34.189	-2.7097					40	16	4	0	0	0	0.73938	1	1566	1566		31.955	0.42505	1	316260	+		31173	28774	25651	25676	34401	34401					0.011977675518892283
LKRAKGPTNP	10	Unmodified	_LKRAKGPTNP_					0	0	0			REV__nc|ENSG00000198901|O43663-3|PRC1	REV__nc|ENSG00000198901|O43663-3|PRC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.3776245117188	2	541.327465	1080.64038	-2.4181	-0.001309	-2.9565	-0.0016004	-5.3745	-0.0029094	541.3256030415339	103.89	0.89528	103.89	103.6	104.49	0					34	20	3	0	0	0	0.026464	1	11689	11689		51.193	0	1	553500	+		31174	23090	25652	25677	34402	34402					0.10328229354149698
LKRAPQDLN	9	Unmodified	_LKRAPQDLN_					0	0	0			REV__nc|ENSG00000134262|Q9Y6B7-2|AP4B1	REV__nc|ENSG00000134262|Q9Y6B7-2|AP4B1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2843627929688	2	527.803823	1053.59309	-0.86791	-0.00045809	1.7004	0.00089748	0.83249	0.00043939	527.8071993045359	51.932	0.12418	51.932	51.871	51.995	0					4	2	2	0	0	0	0.027462	1	4036	4036		16.473	4.2663	1	27569	+		31175	28862	25653	25678	34403	34403					0.06843950083134587
LKRARKLLA	9	Unmodified	_LKRARKLLA_					0	0	0			REV__UBN1|p.T1047Rfs*17|1|0.21|ENSG00000118900|chr16:4876985-4876986|-/GGAGGAT|frameshift_variant	REV__UBN1|p.T1047Rfs*17|1|0.21|ENSG00000118900|chr16:4876985-4876986|-/GGAGGAT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.7789916992188	2	534.871843	1067.72913	0.39744	0.00021258	-0.82597	-0.00044179	-0.42853	-0.00022921	534.8706074166467	72.016	0.28982	72.016	71.835	72.125	0					9	6	2	0	0	0	0.027462	1	7006	7006		17.365	0	1	118580	+		31176	18420	25654	25679	34404	34404					0.19797689384449768
LKREKLNFI	9	Unmodified	_LKREKLNFI_					0	0	0		nc|ENSG00000187950|Q7RTY7|OVCH1	nc|ENSG00000187950|Q7RTY7|OVCH1	nc|ENSG00000187950|Q7RTY7|OVCH1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	580.83056640625	2	580.861141	1159.70773	-1.0185	-0.00059163	-1.957	-0.0011367	-2.9755	-0.0017284	580.8592121575955	76.841	0.2827	73.902	73.691	73.974	-2.9389					7	5	2	0	0	0	0.027462	1	6105	6105		35.618	0	1	19084			31177	15227	25655	25680	34405	34405					0.13426259565085275
LKRERSDL	8	Unmodified	_LKRERSDL_					0	0	0			REV__ENST00000472298.1_1_13:32981593-33002081:-|nuORF	REV__ENST00000472298.1_1_13:32981593-33002081:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.796875	2	508.795998	1015.57744	0.15989	8.1351E-05	3.86	0.0019639	4.0198	0.0020453	508.79770880532556	111.59	1.4617	110.08	109.68	111.15	-1.5111					73	27	4	0	0	0	0.61436	1	10286	10286		60.972	4.2509	1	395290	+		31178	26309	25656	25681	34406	34406					0.07027663566088904
LKRETDDL	8	Unmodified	_LKRETDDL_					0	0	0		ENSG00000070182|ENST00000644917|SPTB;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB	ENSG00000070182|ENST00000644917|SPTB	ENSG00000070182|ENST00000644917|SPTB	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.2259521484375	2	495.266739	988.518924	-0.52682	-0.00026092	1.089	0.00053936	0.56221	0.00027844	495.26707260197685	48.653	0.26152	48.653	48.501	48.762	0					7	5	2	0	0	0	0.028476	1	3598	3598		31.955	5.2619	1	60005			31179	1421	25657	25682	34407	34407					0.024205622009503713
LKREVPKGLGW	11	Unmodified	_LKREVPKGLGW_					0	0	0			REV__ENST00000509297.5_1_5:135469533-135483594:+|nuORF	REV__ENST00000509297.5_1_5:135469533-135483594:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8831787109375	2	641.885147	1281.75574	-2.5182	-0.0016164	-1.9587	-0.0012572	-4.4768	-0.0028736	641.8839546837315	150.47	2.9704	149.03	147.78	150.75	-1.4344					235	64	4	0	0	0	0.72516	1	14716	14716		13.454	1.2474	1	344900	+		31180	26925	25658	25683	34408	34408					0.12613333485114708
LKRFPKDPD	9	Unmodified	_LKRFPKDPD_					0	0	0			REV__ENSG00000024422|ENST00000263277|EHD2	REV__ENSG00000024422|ENST00000263277|EHD2	MULTI-SECPEP	OvCa9_classI_Rep3	3	557.330322265625	2	558.314023	1114.61349	-0.55694	-0.00031095	2.0213	0.0011285	1.4643	0.00081755	558.8168608967001	109.26	0.57884	108.11	107.98	108.56	-1.1444					17	10	2	0	0	0	0.027462	1	7832	7832		40.778	0	1	27161	+		31181	16564	25659	25684	34409	34409					0.06077120742929765
LKRGFLVLI	9	Unmodified	_LKRGFLVLI_					0	0	0		nc|ENSG00000183704|A6NJY1|SLC9B1P1	nc|ENSG00000183704|A6NJY1|SLC9B1P1	nc|ENSG00000183704|A6NJY1|SLC9B1P1	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.8031616210938	2	529.85787	1057.70119	-1.2912	-0.00068413	-2.3627	-0.0012519	-3.6539	-0.001936	530.3563311059864	104.34	0.44756	103.77	103.52	103.97	-0.57639					11	8	2	0	0	0	0.027462	1	9651	9651		47.916	21.119	1	12015			31182	15213	25660	25685	34410	34410					0.17464366404351495
LKRGLFIIL	9	Unmodified	_LKRGLFIIL_					0	0	0		tr|A0A553SFZ3|A0A553SFZ3_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09750PE=4SV=1	tr|A0A553SFZ3|A0A553SFZ3_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09750PE=4SV=1	tr|A0A553SFZ3|A0A553SFZ3_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09750PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3077392578125	2	536.865695	1071.71684	1.3959	0.00074939	0.44087	0.00023669	1.8367	0.00098608	536.8658252280194	111.8	0.73483	111.8	111.51	112.25	0					34	15	3	0	0	0	0.027441	1	12714	12714		52.299	0	1	293840			31183	33097	25661	25686	34411	34411					0.1838465292141791
LKRGQPLPT	9	Unmodified	_LKRGQPLPT_					0	0	0		ENSG00000078687|ENST00000696270|TNRC6C;nc|ENSG00000078687|Q9HCJ0-4|TNRC6C	ENSG00000078687|ENST00000696270|TNRC6C	ENSG00000078687|ENST00000696270|TNRC6C	MULTI-MSMS	OvCa99_classI_Rep5	1	505.31256103515625	2	505.311284	1008.60801	-0.67523	-0.0003412	0.43234	0.00021847	-0.24289	-0.00012273	505.3113548277766	53.413	0.89721	53.413	52.956	53.854	0					55	20	3	0	0	0	0.50149	1	4224	4224		42.396	1.618	1	1829800			31184	1598	25662	25687	34412	34412					0.1040544195111579
LKRHLWSL	8	Unmodified	_LKRHLWSL_					0	0	0			REV__ENSG00000179409|ENST00000319004|GEMIN4	REV__ENSG00000179409|ENST00000319004|GEMIN4	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2974243164062	2	526.821818	1051.62908	-0.35414	-0.00018657	0.4139	0.00021805	0.059766	3.1486E-05	526.8216184645103	61.075	0.25681	61.075	60.943	61.2	0					11	5	3	0	0	0	0.028476	1	5360	5360		25.45	0	1	191420	+		31185	22123	25663	25688	34413	34413					0.10533452050663072
LKRIEYML	8	Oxidation (M)	_LKRIEYM(Oxidation (M))L_		LKRIEYM(1)L		LKRIEYM(66)L	0	0	1		tr|A0A7D6VSW8|A0A7D6VSW8_9CLOTCotSfamilysporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10855PE=4SV=1	tr|A0A7D6VSW8|A0A7D6VSW8_9CLOTCotSfamilysporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10855PE=4SV=1	tr|A0A7D6VSW8|A0A7D6VSW8_9CLOTCotSfamilysporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10855PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	541.3040771484375	2	541.307352	1080.60015	1.3945	0.00075487	-4.4872	-0.002429	-3.0927	-0.0016741	541.3044161703891	111.35	1.0283	111.35	110.76	111.79	0					59	22	4	0	0	0	0.59148	1	12638	12638		65.803	7.0212	1	1550700			31186	35064	25664	25689	34414	34414		771			0.06307546639322936
LKRITWNL	8	Unmodified	_LKRITWNL_					0	0	0			REV__nc|ENSG00000083067|Q9HCF6-10|TRPM3	REV__nc|ENSG00000083067|Q9HCF6-10|TRPM3	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.2735595703125	2	522.321651	1042.62875	-1.4864	-0.00077636	1.327	0.00069311	-0.15938	-8.3248E-05	522.3221988387746	65.884	0.31833	65.884	65.665	65.984	0					19	7	3	0	0	0	0.028476	1	6049	6049		11.511	0	1	1676300	+		31187	17093	25665	25690	34415	34415					0.10914032330788359
LKRKISVK	8	Unmodified	_LKRKISVK_					0	0	0		ENSG00000198189|ENST00000358290|HSD17B11	ENSG00000198189|ENST00000358290|HSD17B11	ENSG00000198189|ENST00000358290|HSD17B11	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.30462646484375	2	486.339844	970.665135	0.87891	0.00042745	0.16974	8.2553E-05	1.0486	0.00051	486.3398762321393	126.38	0.47225	125.31	124.97	125.44	-1.0715					14	8	2	0	0	0	0.028476	1	9868	9868		31.955	0	1	13709			31188	8794	25666	25691	34416	34416					0.17862909227505952
LKRKKNHRQWT	11	Unmodified	_LKRKKNHRQWT_					0	0	0			REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|154|3|sense	REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|154|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.77105712890625	3	498.963659	1493.86915	1.9542	0.00097506	2.9061	0.00145	4.8603	0.0024251	499.2999014127424	106.03	0.56996	106.03	105.79	106.36	0					28	12	3	0	0	0	0.026101	1	11960	11960		26.75	20.429	1	489850	+		31189	28547	25667	25692	34417	34417					0.1419682165087579
LKRKVPLL	8	Unmodified	_LKRKVPLL_					0	0	0			REV__ENST00000466414.1_1_X:100652799-100653600:-|nuORF	REV__ENST00000466414.1_1_X:100652799-100653600:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.2988586425781	2	483.844762	965.674971	-0.17317	-8.3788E-05	-1.259	-0.00060917	-1.4322	-0.00069296	483.8443253142611	62.016	0.25285	62.016	61.912	62.165	0					6	5	2	0	0	0	0.028476	1	5510	5510		26.796	13.021	1	40776	+		31190	17556	25668	25693	34418	34418					0.19076097232891698
LKRKYWWKNSK	11	Unmodified	_LKRKYWWKNSK_					0	0	0		VAMP3|p.C76S|1|0.1|ENSG00000049245|chr1:7777314-7777314|G/C|missense_variant	VAMP3|p.C76S|1|0.1|ENSG00000049245|chr1:7777314-7777314|G/C|missense_variant	VAMP3|p.C76S|1|0.1|ENSG00000049245|chr1:7777314-7777314|G/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.3117065429688	3	512.964777	1535.8725	0.80313	0.00041198	3.2933	0.0016894	4.0965	0.0021013	512.9663434201178	36.282	0.40025	33.433	33.288	33.689	-2.849					9	7	2	0	0	0	0.026478	1	1222	1222		10.587	0.4829	1	6960.4			31191	36297	25669	25694	34419	34419					0.1260007170485551
LKRLAEDLP	9	Unmodified	_LKRLAEDLP_					0	0	0			REV__ENSG00000235961|ENST00000421798|PNMA6A	REV__ENSG00000235961|ENST00000421798|PNMA6A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.7723999023438	2	527.816399	1053.61824	-0.70854	-0.00037398	0.32023	0.00016902	-0.38831	-0.00020496	527.8166106454752	98.473	1.1181	96.095	95.675	96.794	-2.3786					48	21	3	0	0	0	0.027462	1	8752	8752		26.693	0	1	202570	+		31192	23408	25670	25695	34420	34420					0.09358004885712035
LKRLDGLLP	9	Unmodified	_LKRLDGLLP_					0	0	0			REV__ENST00000494718.5_1_X:51641614-51641740:+|nuORF	REV__ENST00000494718.5_1_X:51641614-51641740:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	512.8310546875	2	512.829309	1023.64407	1.7635	0.00090437	0.45929	0.00023554	2.2228	0.0011399	512.829389934331	87.318	1.0328	87.318	87.054	88.087	0					57	24	4	0	0	0	0.079296	1	9239	9239		102.77	3.3984	1	3715100	+		31193	22110	25671	25696	34421	34421					0.13318899127989425
LKRLFNWP	8	Unmodified	_LKRLFNWP_					0	0	0			REV__nc|ENSG00000106608|Q8TCY9-3|URGCP	REV__nc|ENSG00000106608|Q8TCY9-3|URGCP	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.294921875	2	537.316369	1072.61818	-1.944	-0.0010445	-2.2874	-0.0012291	-4.2314	-0.0022736	537.3142608696317	61.065	1.3046	58.295	57.871	59.176	-2.7702					50	24	3	0	0	0	0.028476	1	4509	4509		57.811	7.7867	1	59793	+		31194	17813	25672	25697	34422	34422					0.08478049676364208
LKRLQLSP	8	Unmodified	_LKRLQLSP_					0	0	0			REV__ENST00000606584.5_1_13:79980478-79992024:+|nuORF	REV__ENST00000606584.5_1_13:79980478-79992024:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	477.809326171875	2	477.808377	953.6022	0.21496	0.00010271	-0.17413	-8.3201E-05	0.040835	1.9511E-05	477.80816889216754	64.744	0.97179	64.744	64.375	65.347	0					53	23	3	0	0	0	0.35163	1	5922	5922		97.473	3.4663	1	2392700	+		31195	28079	25673	25698	34423	34423					0.12354343439471904
LKRLVSALI	9	Unmodified	_LKRLVSALI_					0	0	0		nc|ENSG00000147081|Q5JQC9-2|AKAP4;ENSG00000147081|ENST00000358526|AKAP4	nc|ENSG00000147081|Q5JQC9-2|AKAP4	nc|ENSG00000147081|Q5JQC9-2|AKAP4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.3254089355469	2	506.847502	1011.68045	-0.7435	-0.00037684	1.3176	0.00066781	0.57408	0.00029097	506.8479646105973	76.967	0.67639	74.105	73.814	74.49	-2.8627					27	13	3	0	0	0	0.027462	1	6131	6131		37.812	0	1	207880			31196	5328	25674	25699	34424	34424					0.17507776024706345
LKRNRLVSL	9	Unmodified	_LKRNRLVSL_					0	0	0			REV__MTNR1B|p.Y92Sfs*13|1|0.03|ENSG00000134640|chr11:92981497-92981498|-/C|frameshift_variant	REV__MTNR1B|p.Y92Sfs*13|1|0.03|ENSG00000134640|chr11:92981497-92981498|-/C|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.8405151367188	2	549.858932	1097.70331	-0.97884	-0.00053822	0.59131	0.00032514	-0.38753	-0.00021309	549.8591900772134	34.977	0.65769	34.977	34.772	35.429	0					33	13	4	0	0	0	0.027462	1	1739	1739		7.1934	0	1	1490900	+		31197	19217	25675	25700	34425	34425					0.15836795142172377
LKRPELGLTL	10	Unmodified	_LKRPELGLTL_					0	0	0		ENST00000381161.5_1_X:2748138-2799251:+|nuORF;nc|ENSG00000056998|O15488-5|GYG2;nc|ENSG00000056998|O15488-4|GYG2;nc|ENSG00000056998|O15488-3|GYG2;nc|ENSG00000056998|O15488-6|GYG2;ENSG00000056998|ENST00000398806|GYG2;nc|ENSG00000056998|O15488|GYG2	ENST00000381161.5_1_X:2748138-2799251:+|nuORF	ENST00000381161.5_1_X:2748138-2799251:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	570.3610229492188	2	570.360973	1138.70739	0.88278	0.00050351	-2.8571	-0.0016296	-1.9744	-0.0011261	570.3592234734417	157.3	1.2803	157.3	156.95	158.23	0					75	25	5	0	0	0	0.74374	1	18483	18483		25.574	2.0514	1	587780			31198	1231	25676	25701	34426	34426					0.14358839845203875
LKRPPVQNI	9	Unmodified	_LKRPPVQNI_					0	0	0		ENST00000555404.5_2_14:58875849-58877568:-|nuORF	ENST00000555404.5_2_14:58875849-58877568:-|nuORF	ENST00000555404.5_2_14:58875849-58877568:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	532.8335571289062	2	532.832383	1063.65021	-0.019455	-1.0366E-05	0.11903	6.3423E-05	0.099574	5.3056E-05	532.8323191818035	62.145	0.79501	62.145	61.826	62.621	0					52	18	4	0	0	0	0.22961	1	5503	5503		71.296	1.6681	1	3471800			31199	13646	25677	25702	34427	34427					0.1209341735950602
LKRPQKASR	9	Unmodified	_LKRPQKASR_					0	0	0		ADGRG1|p.H192R|1|0.17|ENSG00000205336|chr16:57653290-57653290|A/G|missense_variant	ADGRG1|p.H192R|1|0.17|ENSG00000205336|chr16:57653290-57653290|A/G|missense_variant	ADGRG1|p.H192R|1|0.17|ENSG00000205336|chr16:57653290-57653290|A/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.7807006835938	2	542.340907	1082.66726	-1.1523	-0.00062497	2.2383	0.0012139	1.086	0.00058897	542.3418269832598	103.91	0.83852	101.79	101.38	102.22	-2.1192					24	15	2	0	0	0	0.027462	1	9350	9350		29.15	0	1	49154			31200	39	25678	25703	34428	34428					0.12923337965298742
LKRQAIPLA	9	Unmodified	_LKRQAIPLA_					0	0	0		ENST00000367161.7_1_1:205116358-205116508:-|nuORF	ENST00000367161.7_1_1:205116358-205116508:-|nuORF	ENST00000367161.7_1_1:205116358-205116508:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.8097229003906	2	505.329476	1008.6444	-0.83292	-0.0004209	-2.3245	-0.0011746	-3.1574	-0.0015955	505.32900418377477	74.341	0.51927	71.11	70.769	71.289	-3.2308					16	10	2	0	0	0	0.027462	1	5787	5787		40.573	3.4135	1	13214			31201	10836	25679	25704	34429	34429					0.14042318847828028
LKRQFSIF	8	Unmodified	_LKRQFSIF_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5;DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant;DNAH5|p.M2992Ifs*5|1|0.15|ENSG00000039139|chr5:13777331-13777332|-/AA|frameshift_variant;DNAH5|p.M2992Sfs*34|1|0.14|ENSG00000039139|chr5:13777333-13777334|-/ACAGATAGATAGATAGACAGACAGA|frameshift_variant	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.3218383789062	2	519.808377	1037.6022	-0.10256	-5.3312E-05	-3.6085	-0.0018757	-3.711	-0.001929	519.8063073574392	59.529	0.9345	56.749	56.189	57.124	-2.7801					32	17	3	0	0	0	0.028476	1	4344	4344		31.955	6.5047	1	38248			31202	1103	25680	25705	34430	34430					0.0849034343943913
LKRQSQQLL	9	Unmodified	_LKRQSQQLL_					0	0	0		ENST00000442711.1_1_7:41739953-41740040:-|nuORF	ENST00000442711.1_1_7:41739953-41740040:-|nuORF	ENST00000442711.1_1_7:41739953-41740040:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.3280029296875	2	557.340572	1112.66659	0.209	0.00011648	-1.1443	-0.00063776	-0.9353	-0.00052128	557.3399907403066	52.99	0.25798	52.99	52.873	53.131	0					6	5	2	0	0	0	0.027448	1	4190	4190		63.306	25.495	1	86984			31203	11945	25681	25706	34431	34431					0.11476498525621537
LKRRKALD	8	Unmodified	_LKRRKALD_					0	0	0			REV__ENST00000480912.5_1_6:31847863-31860642:-|nuORF	REV__ENST00000480912.5_1_6:31847863-31860642:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.7186279296875	2	500.324725	998.634898	-0.72105	-0.00036076	0.39603	0.00019814	-0.32503	-0.00016262	500.3247301904484	39.598	0.59564	39.598	39.42	40.016	0					26	13	3	0	0	0	0.028476	1	2338	2338		35.201	0	1	1287200	+		31204	23150	25682	25707	34432	34432					0.13552550562303622
LKRRKQHWRRF	11	Unmodified	_LKRRKQHWRRF_					0	0	0			REV__ENST00000467796.5_1_22:51221718-51237143:+|nuORF	REV__ENST00000467796.5_1_22:51221718-51237143:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.3019409179688	3	537.658681	1609.95422	-0.76797	-0.0004129	-1.8639	-0.0010021	-2.6318	-0.001415	537.6576231843237	56.551	0.5551	53.256	52.87	53.425	-3.2944					19	10	2	0	0	0	0.026534	1	3585	3585		1.3219	0	1	13382	+		31205	26210	25683	25708	34433	34433					0.1736361190730804
LKRRLLAE	8	Unmodified	_LKRRLLAE_					0	0	0		nc|ENSG00000163001|Q96G28-2|CFAP36;ENSG00000163001|ENST00000349456|CFAP36;ENST00000481791.1_1_2:55771313-55772141:+|nuORF	nc|ENSG00000163001|Q96G28-2|CFAP36	nc|ENSG00000163001|Q96G28-2|CFAP36	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.7892761230469	2	499.827101	997.639649	0.17029	8.5113E-05	-0.46332	-0.00023158	-0.29303	-0.00014647	499.8267980313738	63.024	0.4413	63.024	62.816	63.257	0					18	10	2	0	0	0	0.028476	1	5624	5624		16.473	4.2663	1	663320			31206	15136	25684	25709	34434	34434					0.1407343470507385
LKRRPSWL	8	Unmodified	_LKRRPSWL_					0	0	0		ENST00000376511.6_1_6:30569009-30569351:-|nuORF;PPP1R10|p.L939Cfs*109|1|0.04|ENSG00000204569|chr6:30601557-30601557|G/-|frameshift_variant	ENST00000376511.6_1_6:30569009-30569351:-|nuORF	ENST00000376511.6_1_6:30569009-30569351:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.3284301757812	2	528.327268	1054.63998	0.83538	0.00044135	1.5175	0.00080174	2.3529	0.0012431	528.3278477712166	129.01	4.1824	127.56	127.15	131.33	-1.4565					215	84	4	0	0	0	0.73938	1	12534	12534		31.955	3.7006	1	383740			31207	11071	25685	25710	34435	34435					0.11484854424929836
LKRRRPVD	8	Unmodified	_LKRRRPVD_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.2682495117188	2	520.327799	1038.64105	-2.8593	-0.0014878	3.8935	0.0020259	1.0343	0.00053816	520.3296494729352	88.055	1.2062	85.452	85.179	86.385	-2.6027					55	23	3	0	0	0	0.028476	1	7611	7611		30.504	0	1	302420	+		31208	17764	25686	25711	34436	34436					0.12327068793842955
LKRRRPVD	8	Unmodified	_LKRRRPVD_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-MATCH	OvCa9_classI_Rep2	2		2	520.327799	1038.64105	0.88703	0.00046155	0.81633	0.00042476	1.7034	0.00088631	520.3279816117628	86.908	1.6497	85.477	85.175	86.825	-1.4311	0.0096791	-0.0018506	NaN	30.504	68	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250320	+		31209	17764	25686	25711							0.12327068793842955
LKRRRPVD	8	Unmodified	_LKRRRPVD_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-MATCH	OvCa9_classI_Rep3	3		2	520.327799	1038.64105	-0.53016	-0.00027586	2.8549	0.0014855	2.3247	0.0012096	520.3290477897693	87.65	1.375	85.473	85.138	86.513	-2.1768	0.0057688	0.00027089	NaN	30.504	68	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	424250	+		31210	17764	25686	25711							0.12327068793842955
LKRRVSTG	8	Unmodified	_LKRRVSTG_					0	0	0		chr1:154220299-154225084|312|11.29|0.07|7.27|+|1|None,UBAP2L|1	chr1:154220299-154225084|312|11.29|0.07|7.27|+|1|None,UBAP2L|1	chr1:154220299-154225084|312|11.29|0.07|7.27|+|1|None,UBAP2L|1	MULTI-MSMS	OvCa9_classI_Rep2	2	458.7876281738281	2	458.787976	915.561398	-2.0925	-0.00096003	2.0092	0.00092177	-0.083388	-3.8258E-05	458.7887619770069	147.55	1.9467	147.32	146.82	148.77	-0.22697					104	38	4	0	0	0	0.75241	1	14882	14882		25.45	6.0902	1	613710			31211	243	25687	25712	34437	34437					0.10024002119848774
LKRRWRWQQTQ	11	Unmodified	_LKRRWRWQQTQ_					0	0	0		nc|ENSG00000264522|Q6GQQ9-2|OTUD7B;ENSG00000264522|ENST00000581312|OTUD7B;OTUD7A|p.N531Tfs*88|1|0.84|ENSG00000169918|chr15:31484483-31484483|T/-|frameshift_variant;nc|ENSG00000169918|Q8TE49|OTUD7A;ENSG00000169918|ENST00000307050|OTUD7A	nc|ENSG00000264522|Q6GQQ9-2|OTUD7B;OTUD7A|p.N531Tfs*88|1|0.84|ENSG00000169918|chr15:31484483-31484483|T/-|frameshift_variant	nc|ENSG00000264522|Q6GQQ9-2|OTUD7B	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.2962646484375	3	529.29893	1584.87496	-0.92121	-0.0004876	-2.9594	-0.0015664	-3.8806	-0.002054	529.2973943446033	21.891	1.5143	20.552	20.27	21.785	-1.3386					128	35	6	0	0	0	0.72573	1	289	289		6.001	2.5923	1	1347900			31212	9519;7054	25688	25713	34438	34438					0.10591920162551105
LKRRYISQ	8	Unmodified	_LKRRYISQ_					0	0	0			REV__nc|ENSG00000198865|Q4G0S7-2|CCDC152	REV__nc|ENSG00000198865|Q4G0S7-2|CCDC152	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.3336181640625	2	532.322183	1062.62981	-1.9623	-0.0010446	-1.1505	-0.00061243	-3.1128	-0.001657	532.3225068533472	42.316	0.29758	39.336	39.216	39.513	-2.9804					6	5	2	0	0	0	0.028476	1	1966	1966		34.173	0	1	9117.3	+		31213	23082	25689	25714	34439	34439					0.101002466996988
LKRVAIVRL	9	Unmodified	_LKRVAIVRL_					0	0	0			REV__SLC17A1|p.S332R|1|0.12|ENSG00000124568|chr6:25811672-25811672|G/T|missense_variant	REV__SLC17A1|p.S332R|1|0.12|ENSG00000124568|chr6:25811672-25811672|G/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.8026733398438	2	534.374218	1066.73388	-0.96281	-0.0005145	0.26774	0.00014307	-0.69507	-0.00037143	534.3740714535601	65.686	0.44092	65.686	65.426	65.867	0					16	10	2	0	0	0	0.027462	1	6065	6065		16.473	0	1	411750	+		31214	29367	25690	25715	34440	34440					0.20318573527219996
LKRVGGHLL	9	Unmodified	_LKRVGGHLL_					0	0	0			REV__PI4KB|p.V66_A67insRKLILSDELK|1|0.09|ENSG00000143393|chr1:151316284-151316285|-/TTTAGCTCATCTGAGAGGATCAGCTTCCGT|inframe_insertion	REV__PI4KB|p.V66_A67insRKLILSDELK|1|0.09|ENSG00000143393|chr1:151316284-151316285|-/TTTAGCTCATCTGAGAGGATCAGCTTCCGT|inframe_insertion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.2905578613281	2	496.821818	991.629084	-0.39772	-0.00019759	0.18631	9.2563E-05	-0.21141	-0.00010503	496.821767199616	82.997	1.7076	80.314	79.635	81.343	-2.683					55	34	2	0	0	0	0.027462	1	6803	6803		3.6843	0	1	89091	+		31215	29294	25691	25716	34441	34441					0.13293452050652377
LKRVGGHLL	9	Unmodified	_LKRVGGHLL_					0	0	0			REV__PI4KB|p.V66_A67insRKLILSDELK|1|0.09|ENSG00000143393|chr1:151316284-151316285|-/TTTAGCTCATCTGAGAGGATCAGCTTCCGT|inframe_insertion	REV__PI4KB|p.V66_A67insRKLILSDELK|1|0.09|ENSG00000143393|chr1:151316284-151316285|-/TTTAGCTCATCTGAGAGGATCAGCTTCCGT|inframe_insertion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	496.821818	991.629084	0.42796	0.00021262	2.522	0.001253	2.9499	0.0014656	496.8213824399374	81.792	1.6003	80.144	79.465	81.065	-1.6485	-0.17124	0.0020212	NaN	3.6843	83	30	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90514	+		31216	29294	25691	25716							0.13293452050652377
LKRVGGHLL	9	Unmodified	_LKRVGGHLL_					0	0	0			REV__PI4KB|p.V66_A67insRKLILSDELK|1|0.09|ENSG00000143393|chr1:151316284-151316285|-/TTTAGCTCATCTGAGAGGATCAGCTTCCGT|inframe_insertion	REV__PI4KB|p.V66_A67insRKLILSDELK|1|0.09|ENSG00000143393|chr1:151316284-151316285|-/TTTAGCTCATCTGAGAGGATCAGCTTCCGT|inframe_insertion	MULTI-MATCH	OvCa9_classI_Rep3	3		2	496.821818	991.629084	-1.124	-0.00055843	3.4105	0.0016944	2.2864	0.001136	496.82203857379824	82.784	1.7202	80.488	79.634	81.354	-2.2963	0.17233	0.002904	NaN	3.6843	98	34	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126490	+		31217	29294	25691	25716							0.13293452050652377
LKRVLWAAI	9	Unmodified	_LKRVLWAAI_					0	0	0			REV__tr|A0A553STP4|A0A553STP4_NIACIProbablemembranetransporterproteinOS=NialliacirculansOX=1397GN=CEQ21_05385PE=3SV=1	REV__tr|A0A553STP4|A0A553STP4_NIACIProbablemembranetransporterproteinOS=NialliacirculansOX=1397GN=CEQ21_05385PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.7789916992188	2	535.347669	1068.68079	-0.13062	-6.993E-05	-3.8221	-0.0020462	-3.9528	-0.0021161	535.3453255883303	71.247	1.4078	71.247	70.8	72.208	0					68	34	4	0	0	0	0.027462	1	7006	7006		24.203	0	1	3836500	+		31218	30991	25692	25717	34442	34442					0.14919195744550962
LKRVVQLQ	8	Unmodified	_LKRVVQLQ_					0	0	0			REV__ENSG00000155827|ENST00000389120|RNF20	REV__ENSG00000155827|ENST00000389120|RNF20	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.3033752441406	2	492.321651	982.62875	-0.89807	-0.00044214	0.41454	0.00020409	-0.48353	-0.00023805	492.3217155184118	37.532	0.5087	37.532	37.298	37.806	0					18	10	2	0	0	0	0.028476	1	2044	2044		110.34	0	1	55652	+		31219	20442	25693	25718	34443	34443					0.136740323308004
LKRWRPSTWVI	11	Unmodified	_LKRWRPSTWVI_					0	0	0		ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	ENSG00000204217|ENST00000374580|BMPR2	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.2821960449219	3	481.285739	1440.83539	-6.5406	-0.0031479	2.0344	0.00097915	-4.5062	-0.0021688	481.28689914588375	161.43	3.2893	159.81	158.56	161.85	-1.6239					191	83	3	0	0	0	0.72542	1	15983	15983		10.104	0.45776	1	100850			31220	8956	25694	25719	34444	34444					0.13260400159106212
LKRYKFKSLRH	11	Unmodified	_LKRYKFKSLRH_					0	0	0		ENSG00000215009|ENST00000399422|ACSM4	ENSG00000215009|ENST00000399422|ACSM4	ENSG00000215009|ENST00000399422|ACSM4	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.6347351074219	3	492.636772	1474.88849	-6.2167	-0.0030626	1.2642	0.00062278	-4.9525	-0.0024398	492.6373104493484	162.25	1.447	160.62	160.35	161.8	-1.6239					85	40	3	0	0	0	0.7257	1	16042	16042		6.3209	2.7018	1	49551			31221	9196	25695	25720	34445	34445					0.1700377794177257
LKRYPRANGFF	11	Unmodified	_LKRYPRANGFF_					0	0	0		nc|ENSG00000130962|O14668-2|PRRG1;ENSG00000130962|ENST00000378628|PRRG1	nc|ENSG00000130962|O14668-2|PRRG1	nc|ENSG00000130962|O14668-2|PRRG1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.766845703125	3	456.922689	1367.74624	1.0888	0.00049748	3.0119	0.0013762	4.1006	0.0018737	456.9240117703045	36.679	1.0956	33.787	33.595	34.691	-2.8925					54	21	4	0	0	0	0.026033	1	1363	1363		22.562	0	1	159990			31222	4031	25696	25721	34446	34446					0.07707565199575583
LKSCFLIFP	9	Unmodified	_LKSCFLIFP_					0	0	0		ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2	ENST00000459850.5_1_9:139905575-139923366:-|nuORF	ENST00000459850.5_1_9:139905575-139923366:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	533.348388671875	2	534.301539	1066.58852	-0.47052	-0.0002514	3.9928	0.0021334	3.5223	0.001882	534.3034241537515	93.463	0.90972	91.501	91.228	92.138	-1.9617					26	17	2	0	0	0	0.027462	1	6047	6047		27.882	0	1	73384			31223	2600	25697	25722	34447	34447					0.057893496159977076
LKSEKTKP	8	Unmodified	_LKSEKTKP_					0	0	0			REV__ENSG00000102595|ENST00000376747|UGGT2	REV__ENSG00000102595|ENST00000376747|UGGT2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.2381286621094	2	465.784567	929.554582	-1.1447	-0.00053319	0.79783	0.00037162	-0.34689	-0.00016157	465.7847668107628	44.323	0.75925	41.284	41.056	41.816	-3.0385					21	14	2	0	0	0	0.028476	1	2177	2177		55.504	0	1	27218	+		31224	17565	25698	25723	34448	34448					0.08698644448611503
LKSEQIKKVPI	11	Unmodified	_LKSEQIKKVPI_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3	REV__ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	OvCa99_classI_Rep5	1	428.2756652832031	3	428.274617	1281.80202	2.1984	0.00094153	-0.23397	-0.0001002	1.9645	0.00084133	428.2744987527341	102.14	0.93929	102.14	101.87	102.81	0					70	21	5	0	0	0	0.46066	1	11394	11394		56.632	0	1	6434300	+		31225	20219	25699	25724	34449	34449					0.17239353596551155
LKSFNTIVL	9	Unmodified	_LKSFNTIVL_					0	0	0			REV__L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|65|2|sense	REV__L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|65|2|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.7540893554688	2	517.815867	1033.61718	-1.2426	-0.00064346	1.8854	0.00097628	0.64275	0.00033282	517.8160135501911	99.965	0.55316	97.64	97.366	97.919	-2.3253					12	10	2	0	0	0	0.027403	1	8932	8932		69.628	25.25	1	9177.4	+		31226	28539	25700	25725	34450	34450					0.10171790516801593
LKSIVPDY	8	Unmodified	_LKSIVPDY_					0	0	0			REV__nc|ENSG00000187778|Q96EZ8-3|MCRS1	REV__nc|ENSG00000187778|Q96EZ8-3|MCRS1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	467.7906188964844	2	467.765843	933.517133	-0.86832	-0.00040617	-0.74842	-0.00035008	-1.6167	-0.00075625	467.7657512084039	44.842	0.35983	41.804	41.663	42.023	-3.0385					8	6	2	0	0	0	0.028476	1	2270	2270		42.474	5.446	1	21202	+		31227	22663	25701	25726	34451	34451					0.0477155318297946
LKSKEKKV	8	Unmodified	_LKSKEKKV_					0	0	0		nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;CDK5RAP2|p.Y1498Gfs*4|1|0.29|ENSG00000136861|chr9:120409227-120409240|TCACGCTGGCATAC/-|frameshift_variant;ENST00000483412.5_1_9:123170580-123298708:-|nuORF	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2746887207031	2	480.316035	958.617516	2.2117	0.0010623	-1.4482	-0.00069559	0.76353	0.00036673	480.3151617977797	77.359	0.17009	77.359	77.252	77.422	0					5	3	2	0	0	0	0.028476	1	7804	7804		21.96	4.5949	1	84618			31228	4524	25702	25727	34452	34452					0.13655210236652238
LKSKMKRQHKR	11	Unmodified	_LKSKMKRQHKR_					0	0	0			REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|162|3|sense	REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|162|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2850646972656	3	480.629512	1438.86671	-0.16234	-7.8024E-05	2.2888	0.0011001	2.1265	0.001022	480.630574168792	23.292	0.30205	23.292	23.195	23.497	0					9	5	2	0	0	0	0.026472	1	330	330		2.688	0	1	32079	+		31229	28492	25703	25728	34453	34453					0.16482649921567827
LKSKRPAGYFV	11	Unmodified	_LKSKRPAGYFV_					0	0	0			REV__CON__P01030	REV__CON__P01030	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3685302734375	2	633.371872	1264.72919	-4.8823	-0.0030923	0.81247	0.0005146	-4.0699	-0.0025777	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.71498	1	13219	13219		24.519	1.9395	1	765700	+	+	31230	16171	25704	25729	34454	34454					0.1074164459378153
LKSLGSTHCL	10	Unmodified	_LKSLGSTHCL_					0	0	0			REV__ENSG00000204481|ENST00000334600|PRAMEF14	REV__ENSG00000204481|ENST00000334600|PRAMEF14	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8098754882812	2	529.786784	1057.55902	-0.63584	-0.00033686	1.4264	0.00075567	0.79053	0.00041881	529.7876729266177	104.6	0.59522	104.6	104.45	105.04	0					17	13	2	0	0	0	0.026891	1	11764	11764		31.53	3.6476	1	1740100	+		31231	23160	25705	25730	34455	34455					0.03253785599872572
LKSLILGCAH	10	Unmodified	_LKSLILGCAH_					0	0	0			REV__ENST00000497212.1_1_2:231265972-231266179:+|nuORF	REV__ENST00000497212.1_1_2:231265972-231266179:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.7865600585938	2	527.807519	1053.60049	0.36965	0.0001951	2.6503	0.0013988	3.0199	0.0015939	527.8087760939272	45.674	0.39347	45.674	45.496	45.89	0					22	8	3	0	0	0	0.026994	1	3170	3170		25.574	0	1	421510	+		31232	26533	25706	25731	34456	34456					0.07582966359200327
LKSLVDPKNLD	11	Unmodified	_LKSLVDPKNLD_					0	0	0		ENSG00000138109|ENST00000260682|CYP2C9	ENSG00000138109|ENST00000260682|CYP2C9	ENSG00000138109|ENST00000260682|CYP2C9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	620.8342895507812	2	621.358628	1240.7027	-1.1898	-0.00073931	-2.9136	-0.0018104	-4.1035	-0.0025497	621.8572993018557	100.22	0.20532	97.893	97.766	97.971	-2.3253					5	3	2	0	0	0	0.025487	1	8960	8960		38.754	3.6016	1	8706.2			31233	4660	25707	25732	34457	34457					0.09197910911780127
LKSPGGPF	8	Unmodified	_LKSPGGPF_					0	0	0			REV__ENST00000426037.6_1_13:99852626-99852881:-|nuORF	REV__ENST00000426037.6_1_13:99852626-99852881:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	401.7376403808594	2	401.726521	801.438489	2.0629	0.00082871	-1.0504	-0.00042196	1.0125	0.00040675	401.72584348078914	64.171	0.44009	60.696	60.442	60.882	-3.475					12	8	2	0	0	0	0.028476	1	4529	4529		18.324	3.6603	1	10332	+		31234	25661	25708	25733	34458	34458					0.02982745668566622
LKSPIGHSRTH	11	Unmodified	_LKSPIGHSRTH_					0	0	0			REV__ENST00000422977.1_1_10:75255907-75255988:+|nuORF	REV__ENST00000422977.1_1_10:75255907-75255988:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.7152099609375	3	411.566794	1231.67855	1.1392	0.00046884	-1.1816	-0.00048632	-0.042468	-1.7478E-05	411.56628591571564	57.436	0.59482	57.436	57.18	57.775	0					27	13	4	0	0	0	0.025772	1	4860	4860		26.75	4.9693	1	1105000	+		31235	25626	25709	25734	34459	34459					0.07198115268784022
LKSPVNLIV	9	Unmodified	_LKSPVNLIV_					0	0	0			REV__nc|ENSG00000134762|Q14574-2|DSC3	REV__nc|ENSG00000134762|Q14574-2|DSC3	MULTI-SECPEP	OvCa9_classI_Rep2	2	491.7814025878906	2	491.81841	981.622267	-0.32928	-0.00016194	1.7209	0.00084638	1.3916	0.00068444	491.8191041641003	84.01	1.3263	82.464	82.172	83.499	-1.5462					36	25	2	0	0	0	0.027411	1	7325	7325		67.494	6.5217	1	17422	+		31236	19230	25710	25735	34460	34460					0.13072094379413102
LKSRKKEAR	9	Unmodified	_LKSRKKEAR_					0	0	0			REV__nc|ENSG00000087460|Q5JWF2|GNAS	REV__nc|ENSG00000087460|Q5JWF2|GNAS	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.3280029296875	2	558.354014	1114.69348	-0.21956	-0.00012259	3.3152	0.001851	3.0956	0.0017284	558.3558141976987	53.307	0.73574	53.307	52.956	53.692	0					35	16	3	0	0	0	0.027425	1	4190	4190		51.193	3.2332	1	575800	+		31237	28747	25711	25736	34461	34461					0.1407160713677058
LKSSLSHAMV	10	Unmodified	_LKSSLSHAMV_					0	0	0		ENST00000474323.5_1_22:44371844-44392260:+|nuORF;SAMM50|p.N436Kfs*18|1|0.18|ENSG00000100347|chr22:43990349-43990350|-/AGTCATTCTAAGCAGAGGGAACAGAATATGC|frameshift_variant;ENSG00000100347|ENST00000350028|SAMM50	ENST00000474323.5_1_22:44371844-44392260:+|nuORF	ENST00000474323.5_1_22:44371844-44392260:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.828369140625	2	536.794609	1071.57467	-0.87311	-0.00046868	-3.371	-0.0018095	-4.2441	-0.0022782	536.7928156937588	66.042	0.41862	66.042	65.831	66.25	0					21	10	3	0	0	0	0.026915	1	6125	6125		14.865	0	1	601850			31238	2052	25712	25737	34462	34462					0.041740721168935124
LKSSNILLL	9	Unmodified	_LKSSNILLL_					0	0	0		ENSG00000143674|ENST00000366624|MAP3K21;nc|ENSG00000143674|Q5TCX8-2|MAP3K21	ENSG00000143674|ENST00000366624|MAP3K21	ENSG00000143674|ENST00000366624|MAP3K21	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.30499267578125	2	500.823692	999.632832	-1.1088	-0.00055534	-0.012779	-6.3999E-06	-1.1216	-0.00056174	500.82357417715707	96.702	1.0799	94.873	94.471	95.551	-1.8286					30	20	2	0	0	0	0.027462	1	6325	6325		47.657	0	1	37992			31239	5085	25713	25738	34463	34463					0.13300077033864
LKSSQKIQN	9	Unmodified	_LKSSQKIQN_					0	0	0		tr|A0A553SJM1|A0A553SJM1_NIACIGlucose-6-phosphateisomeraseOS=NialliacirculansOX=1397GN=pgiPE=3SV=1	tr|A0A553SJM1|A0A553SJM1_NIACIGlucose-6-phosphateisomeraseOS=NialliacirculansOX=1397GN=pgiPE=3SV=1	tr|A0A553SJM1|A0A553SJM1_NIACIGlucose-6-phosphateisomeraseOS=NialliacirculansOX=1397GN=pgiPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.7887573242188	2	523.303655	1044.59276	-2.1608	-0.0011308	1.3792	0.00072172	-0.78166	-0.00040904	523.3043893317938	50.161	1.0415	47.02	46.507	47.548	-3.1416					38	18	4	0	0	0	0.027453	1	2829	2829		45.972	0	1	206980			31240	33518	25714	25739	34464	34464					0.07224530363305348
LKSSQKIQN	9	Unmodified	_LKSSQKIQN_					0	0	0		tr|A0A553SJM1|A0A553SJM1_NIACIGlucose-6-phosphateisomeraseOS=NialliacirculansOX=1397GN=pgiPE=3SV=1	tr|A0A553SJM1|A0A553SJM1_NIACIGlucose-6-phosphateisomeraseOS=NialliacirculansOX=1397GN=pgiPE=3SV=1	tr|A0A553SJM1|A0A553SJM1_NIACIGlucose-6-phosphateisomeraseOS=NialliacirculansOX=1397GN=pgiPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	523.303655	1044.59276	-0.77777	-0.00040701	-0.223	-0.0001167	-1.0008	-0.00052371	523.3035091376962	49.852	0.84483	47.058	46.736	47.581	-2.794	0.019065	-0.0010209	NaN	45.972	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54045			31241	33518	25714	25739							0.07224530363305348
LKSSVKAVI	9	Unmodified	_LKSSVKAVI_					0	0	0		ENSG00000105928|ENST00000645220|GSDME;nc|ENSG00000105928|O60443-3|GSDME;nc|ENSG00000105928|O60443-2|GSDME	ENSG00000105928|ENST00000645220|GSDME	ENSG00000105928|ENST00000645220|GSDME	MULTI-SECPEP	OvCa9_classI_Rep2	2	472.75146484375	2	472.810585	943.606617	-0.59309	-0.00028042	0.44319	0.00020954	-0.14991	-7.0878E-05	472.81066927632673	64.206	0.78949	61.482	61.181	61.97	-2.7246					16	14	2	0	0	0	0.027418	1	4853	4853		49.442	4.9105	1	11901			31242	2512	25715	25740	34465	34465					0.1325580786236742
LKSTPVAPK	9	Unmodified	_LKSTPVAPK_					0	0	0			REV__ENSG00000168484|ENST00000679463|SFTPC	REV__ENSG00000168484|ENST00000679463|SFTPC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.2559814453125	2	470.794935	939.575317	0.39503	0.00018598	-1.2911	-0.00060783	-0.89603	-0.00042185	470.79383381047245	51.823	1.1609	48.65	48.274	49.435	-3.1734					32	22	2	0	0	0	0.027462	1	3062	3062		29.15	0	1	93817	+		31243	21380	25716	25741	34466	34466					0.10311234828282068
LKSVLERKG	9	Unmodified	_LKSVLERKG_					0	0	0		tr|A0A553SQL8|A0A553SQL8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07910PE=4SV=1	tr|A0A553SQL8|A0A553SQL8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07910PE=4SV=1	tr|A0A553SQL8|A0A553SQL8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07910PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7936401367188	2	515.324391	1028.63423	-0.62874	-0.000324	0.44095	0.00022723	-0.18779	-9.6772E-05	515.3244520420875	55.578	0.73724	55.578	55.315	56.052	0					41	17	3	0	0	0	0.027459	1	4592	4592		52.937	18.764	1	2764700			31244	34174	25717	25742	34467	34467					0.12105711122626417
LKTCNVCAFAR	11	Unmodified	_LKTCNVCAFAR_					0	0	0		ENST00000564994.5_1_15:42452954-42453724:-|nuORF	ENST00000564994.5_1_15:42452954-42453724:-|nuORF	ENST00000564994.5_1_15:42452954-42453724:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	613.7987670898438	2	613.312643	1224.61073	1.7257	0.0010584	2.9758	0.0018251	4.7016	0.0028835	613.3145997531063	127.05	0.18317	127.05	126.91	127.1	0					5	3	2	0	0	0	0.025344	1	14684	14684		41.427	0	1	53149			31245	13816	25718	25743	34468	34468					0.0074120602212133235
LKTEKKLF	8	Unmodified	_LKTEKKLF_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.7781982421875	2	503.81841	1005.62227	-0.56169	-0.00028299	-3.0748	-0.0015491	-3.6365	-0.0018321	503.816673234941	21.809	0.55642	20.47	20.169	20.726	-1.3386					14	8	2	0	0	0	0.028476	1	230	230		18.324	0	1	18351			31246	7356	25719	25744	34469	34469					0.11968094379415106
LKTFKIIFE	9	Unmodified	_LKTFKIIFE_					0	0	0		ENSG00000204740|ENST00000454679|MALRD1	ENSG00000204740|ENST00000454679|MALRD1	ENSG00000204740|ENST00000454679|MALRD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.7789306640625	2	569.847167	1137.67978	2.2033	0.0012556	-0.047132	-2.6858E-05	2.1562	0.0012287	569.8469207932412	84.86	0.75012	84.86	84.672	85.422	0					49	17	4	0	0	0	0.027462	1	8876	8876		19.997	4.355	1	1979200			31247	9027	25720	25745	34470	34470					0.11644936585003052
LKTHRAPLS	9	Unmodified	_LKTHRAPLS_					0	0	0			REV__ENST00000541975.2_2_12:133758174-133764492:+|nuORF	REV__ENST00000541975.2_2_12:133758174-133764492:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	511.80755615234375	2	511.808908	1021.60326	-1.8602	-0.00095206	1.7701	0.00090597	-0.090053	-4.609E-05	511.8096472275158	37.824	1.1833	35.115	34.83	36.013	-2.7097					51	23	4	0	0	0	0.64427	1	1745	1745		26.693	3.6504	1	203000	+		31248	26814	25721	25746	34471	34471					0.09332557808374986
LKTIQNLATF	10	Unmodified	_LKTIQNLATF_					0	0	0		AADAC|p.F378Sfs*10|1|0.09|ENSG00000114771|chr3:151828103-151828104|-/AGTGATCTATCAGTGG|frameshift_variant;ENSG00000114771|ENST00000232892|AADAC	AADAC|p.F378Sfs*10|1|0.09|ENSG00000114771|chr3:151828103-151828104|-/AGTGATCTATCAGTGG|frameshift_variant	AADAC|p.F378Sfs*10|1|0.09|ENSG00000114771|chr3:151828103-151828104|-/AGTGATCTATCAGTGG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	574.8375244140625	2	574.837331	1147.66011	-1.4106	-0.00081085	0.80962	0.0004654	-0.60095	-0.00034545	574.8376960382861	90.862	4.6623	88.781	88.464	93.126	-2.0805					220	93	6	0	0	0	0.59317	1	5686	5686		42.864	4.1107	1	4849000			31249	0	25722	25747	34472	34472					0.09218560574208823
LKTKHNLD	8	Unmodified	_LKTKHNLD_					0	0	0			REV__nc|ENSG00000183621|Q7Z4V0-3|ZNF438	REV__nc|ENSG00000183621|Q7Z4V0-3|ZNF438	MULTI-SECPEP	OvCa9_classI_Rep2	2	483.82598876953125	2	484.779816	967.545079	-0.44443	-0.00021545	0.034666	1.6805E-05	-0.40976	-0.00019864	484.7797181689464	77.224	1.9169	75.435	74.793	76.709	-1.7894					87	36	3	0	0	0	0.028476	1	6384	6384		44.117	3.5442	1	172920	+		31250	22370	25723	25748	34473	34473					0.06000876163091107
LKTLLIIYSF	10	Unmodified	_LKTLLIIYSF_					0	0	0		ENSG00000156298|ENST00000378482|TSPAN7;chrX:38561627-38646262|322|14.97|0.5|4.92|+|ENST00000286824|TSPAN7,TSPAN7	ENSG00000156298|ENST00000378482|TSPAN7	ENSG00000156298|ENST00000378482|TSPAN7	MULTI-MSMS	OvCa9_classI_Rep2	2	605.87158203125	2	605.875925	1209.7373	-4.983	-0.0030191	-1.57	-0.00095122	-6.553	-0.0039703	605.874829866227	157.02	0.88571	156.79	156.54	157.42	-0.22696					68	24	4	0	0	0	0.79917	1	15969	15969		19.104	0.84144	1	101120			31251	568	25724	25749	34474	34474					0.14081778790546196
LKTLLPRTP	9	Unmodified	_LKTLLPRTP_					0	0	0			REV__ENSG00000099812|ENST00000215582|MISP	REV__ENSG00000099812|ENST00000215582|MISP	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.7685546875	2	519.837134	1037.65972	1.5549	0.00080828	0.65079	0.0003383	2.2056	0.0011466	519.837271067712	74.92	0.49263	74.92	74.635	75.128	0					23	11	3	0	0	0	0.027462	1	7445	7445		29.17	18.905	1	455090	+		31252	17334	25725	25750	34475	34475					0.14239185645033103
LKTLMVII	8	Unmodified	_LKTLMVII_					0	0	0			REV__ENST00000477970.1_1_1:44078891-44086093:+|nuORF	REV__ENST00000477970.1_1_1:44078891-44086093:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.7544250488281	2	465.806457	929.598361	0.24248	0.00011295	-1.0116	-0.00047122	-0.76915	-0.00035827	465.8058298659618	60.451	0.19685	57.021	56.898	57.095	-3.43					5	3	2	0	0	0	0.028476	1	4099	4099		20.482	1.1219	1	14982	+		31253	26397	25726	25751	34476	34476					0.13074537621389482
LKTLYKLE	8	Unmodified	_LKTLYKLE_					0	0	0			REV__NUGGC|p.N168Y|1|0.08|ENSG00000189233|chr8:28067723-28067723|T/A|missense_variant	REV__NUGGC|p.N168Y|1|0.08|ENSG00000189233|chr8:28067723-28067723|T/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	504.2971496582031	2	504.310418	1006.60628	-0.55421	-0.00027949	-2.1408	-0.0010796	-2.695	-0.0013591	504.3094751601093	105.42	1.0507	103.4	102.85	103.9	-2.0161					36	20	3	0	0	0	0.028476	1	9617	9617		63.306	0	1	60938	+		31254	29261	25727	25752	34477	34477					0.10324388142521457
LKTNAANI	8	Unmodified	_LKTNAANI_					0	0	0		nc|ENSG00000107862|Q92538-3|GBF1;nc|ENSG00000107862|Q92538-2|GBF1;GBF1|p.L1808Tfs*50|1|0.12|ENSG00000107862|chr10:102382171-102382172|-/C|frameshift_variant;nc|ENSG00000107862|Q92538-1|GBF1;ENSG00000107862|ENST00000369983|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	nc|ENSG00000107862|Q92538-3|GBF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	423.22784423828125	2	422.747985	843.481417	-0.17202	-7.2721E-05	-0.15763	-6.6639E-05	-0.32965	-0.00013936	422.74805768030933	54.452	0.34057	54.452	54.334	54.675	0					14	7	2	0	0	0	0.028476	1	4403	4403		35.618	11.416	1	255710			31255	2621	25728	25753	34478	34478					0.053415157259905754
LKTNPVKVH	9	Unmodified	_LKTNPVKVH_					0	0	0		nc|ENSG00000070601|Q5SYB0-3|FRMPD1;ENSG00000070601|ENST00000377765|FRMPD1	nc|ENSG00000070601|Q5SYB0-3|FRMPD1	nc|ENSG00000070601|Q5SYB0-3|FRMPD1	MULTI-MSMS	OvCa9_classI_Rep2	2	518.31689453125	2	518.319109	1034.62366	-0.27738	-0.00014377	-3.6187	-0.0018756	-3.8961	-0.0020194	518.317119052338	137.12	1.3347	136.9	136.16	137.49	-0.22697					65	27	3	0	0	0	0.66262	1	13652	13652		24.519	3.5723	1	143020			31256	1430	25729	25754	34479	34479					0.10773728468188892
LKTSIVSLSP	10	Unmodified	_LKTSIVSLSP_					0	0	0		ENST00000521272.5_1_8:102214575-102216903:-|nuORF	ENST00000521272.5_1_8:102214575-102216903:-|nuORF	ENST00000521272.5_1_8:102214575-102216903:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	522.817626953125	2	522.818607	1043.62266	-0.073553	-3.8455E-05	-0.96675	-0.00050543	-1.0403	-0.00054389	522.8181731834808	67.133	1.5314	64.472	64.099	65.631	-2.661					80	30	4	0	0	0	0.50999	1	5255	5255		52.937	1.6012	1	949510			31257	13118	25730	25755	34480	34480					0.10259469308630287
LKTVELPTL	9	Unmodified	_LKTVELPTL_					0	0	0			REV__nc|ENSG00000144460|Q9P242|NYAP2	REV__nc|ENSG00000144460|Q9P242|NYAP2	MULTI-MSMS	OvCa99_classI_Rep5	1	507.3158874511719	2	507.3157	1012.61685	2.3072	0.0011705	-0.7711	-0.00039119	1.5361	0.00077928	507.3151945071052	113.18	0.65588	113.18	112.88	113.53	0					33	15	3	0	0	0	0.13504	2	12887	12887;12913		87.696	2.7809	1	1511300	+		31258	19913	25731	25756	34481;34482	34481					0.11104370796954299
LKTVELPTL	9	Unmodified	_LKTVELPTL_					0	0	0			REV__nc|ENSG00000144460|Q9P242|NYAP2	REV__nc|ENSG00000144460|Q9P242|NYAP2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	507.3157	1012.61685	0.32102	0.00016286	-0.46164	-0.0002342	-0.14063	-7.1342E-05	507.31519123717277	113.2	0.98847	113.08	112.72	113.71	-0.12174	0.016531	-1.4133E-05	NaN	87.696	36	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63643	+		31259	19913	25731	25756							0.11104370796954299
LKTVELPTL	9	Unmodified	_LKTVELPTL_					0	0	0			REV__nc|ENSG00000144460|Q9P242|NYAP2	REV__nc|ENSG00000144460|Q9P242|NYAP2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	507.3157	1012.61685	-0.13008	-6.5993E-05	0.071621	3.6334E-05	-0.058463	-2.9659E-05	507.31546925667016	114.04	0.91385	112.99	112.74	113.65	-1.055	-0.076649	0.00052693	NaN	87.696	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63390	+		31260	19913	25731	25756							0.11104370796954299
LKTVELPTL	9	Unmodified	_LKTVELPTL_					0	0	0			REV__nc|ENSG00000144460|Q9P242|NYAP2	REV__nc|ENSG00000144460|Q9P242|NYAP2	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	507.3157	1012.61685	0.32618	0.00016548	-0.63592	-0.00032261	-0.30973	-0.00015713	507.31512790226435	114.41	1.3349	113.02	112.34	113.67	-1.3977	-0.049797	-0.00019096	NaN	87.696	45	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89952	+		31261	19913	25731	25756							0.11104370796954299
LKTWAQQL	8	Unmodified	_LKTWAQQL_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;SYNE1|p.A5284Rfs*31|1|0.11|ENSG00000131018|chr6:152323546-152323547|-/C|frameshift_variant;SYNE1|p.T4511Lfs*10|1|0.03|ENSG00000131018|chr6:152331155-152331155|G/-|frameshift_variant;SYNE1|p.R3674Tfs*53|1|0.12|ENSG00000131018|chr6:152353650-152353651|-/ATAATTGCTTCAAAAATTTGAG|frameshift_variant;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;nc|ENSG00000131018|Q8NF91-12|SYNE1;ENST00000471834.1_1_6:152690575-152702320:-|nuORF	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	OvCa99_classI_Rep5	1	494.2857360839844	2	494.284734	986.554916	-0.46821	-0.00023143	0.11795	5.8301E-05	-0.35025	-0.00017313	494.284700432491	60.057	1.0934	60.057	59.766	60.859	0					74	26	4	0	0	0	0.27528	2	5203	5203;5231		111.65	3.5608	1	10749000			31262	4036	25732	25757	34483;34484	34483					0.0611006416845612
LKTWKVDVVL	10	Unmodified	_LKTWKVDVVL_					0	0	0		ENSG00000108592|ENST00000427159|FTSJ3	ENSG00000108592|ENST00000427159|FTSJ3	ENSG00000108592|ENST00000427159|FTSJ3	MULTI-SECPEP	OvCa9_classI_Rep2	2	600.8501586914062	2	600.871174	1199.72779	-0.027312	-1.6411E-05	3.2884	0.0019759	3.2611	0.0019595	601.3701079043119	82.635	0.31325	81.036	80.854	81.167	-1.5988					6	5	2	0	0	0	0.026714	1	7060	7060		42.864	5.0528	1	13094			31263	2666	25733	25758	34485	34485					0.13592010505044527
LKVAVTEEY	9	Unmodified	_LKVAVTEEY_					0	0	0		tr|A0A7D7ACF5|A0A7D7ACF5_9CLOTdTDP-4-dehydrorhamnosereductaseOS=ClostridiumintestinaleOX=36845GN=rfbDPE=3SV=1	tr|A0A7D7ACF5|A0A7D7ACF5_9CLOTdTDP-4-dehydrorhamnosereductaseOS=ClostridiumintestinaleOX=36845GN=rfbDPE=3SV=1	tr|A0A7D7ACF5|A0A7D7ACF5_9CLOTdTDP-4-dehydrorhamnosereductaseOS=ClostridiumintestinaleOX=36845GN=rfbDPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	527.272705078125	2	526.28714	1050.55973	-1.137	-0.00059839	0.88445	0.00046547	-0.25257	-0.00013292	526.2875394103503	97.508	1.1053	95.749	95.26	96.365	-1.7595					49	21	3	0	0	0	0.027462	1	6410	6410		42.396	0	1	59465			31264	36228	25734	25759	34486	34486					0.03646903520575506
LKVAVTEEY	9	Unmodified	_LKVAVTEEY_					0	0	0		tr|A0A7D7ACF5|A0A7D7ACF5_9CLOTdTDP-4-dehydrorhamnosereductaseOS=ClostridiumintestinaleOX=36845GN=rfbDPE=3SV=1	tr|A0A7D7ACF5|A0A7D7ACF5_9CLOTdTDP-4-dehydrorhamnosereductaseOS=ClostridiumintestinaleOX=36845GN=rfbDPE=3SV=1	tr|A0A7D7ACF5|A0A7D7ACF5_9CLOTdTDP-4-dehydrorhamnosereductaseOS=ClostridiumintestinaleOX=36845GN=rfbDPE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	526.28714	1050.55973	2.1265	0.0011191	5.0353	0.00265	7.1618	0.0037692	526.7905169370696	95.904	0.17104	95.904	95.826	95.997	0	0.14869	0.0050656	NaN	42.396	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65525			31265	36228	25734	25759							0.03646903520575506
LKVAVTEEY	9	Unmodified	_LKVAVTEEY_					0	0	0		tr|A0A7D7ACF5|A0A7D7ACF5_9CLOTdTDP-4-dehydrorhamnosereductaseOS=ClostridiumintestinaleOX=36845GN=rfbDPE=3SV=1	tr|A0A7D7ACF5|A0A7D7ACF5_9CLOTdTDP-4-dehydrorhamnosereductaseOS=ClostridiumintestinaleOX=36845GN=rfbDPE=3SV=1	tr|A0A7D7ACF5|A0A7D7ACF5_9CLOTdTDP-4-dehydrorhamnosereductaseOS=ClostridiumintestinaleOX=36845GN=rfbDPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	526.28714	1050.55973	0.085194	4.4836E-05	-0.76486	-0.00040253	-0.67966	-0.0003577	526.2867529490424	96.692	0.98404	95.733	95.381	96.365	-0.95857	-0.022472	-0.0010395	NaN	42.396	46	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44636			31266	36228	25734	25759							0.03646903520575506
LKVDLAQRL	9	Unmodified	_LKVDLAQRL_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	OvCa99_classI_Rep5	1	528.3338012695312	2	528.332216	1054.64988	0.15247	8.0555E-05	-0.51303	-0.00027105	-0.36056	-0.0001905	528.331842215183	72.717	0.66255	72.717	72.45	73.113	0					32	16	2	0	0	0	0.1944	1	7093	7093		77.318	0	1	5072300			31267	9181	25735	25760	34487	34487					0.12473997639654044
LKVDTKSTF	9	Unmodified	_LKVDTKSTF_					0	0	0			REV__tr|A0A7D6VNA3|A0A7D6VNA3_9CLOTFlagellarhook-associatedprotein2OS=ClostridiumintestinaleOX=36845GN=fliDPE=3SV=1	REV__tr|A0A7D6VNA3|A0A7D6VNA3_9CLOTFlagellarhook-associatedprotein2OS=ClostridiumintestinaleOX=36845GN=fliDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	519.7928466796875	2	519.795132	1037.57571	1.5307	0.00079564	-4.1853	-0.0021755	-2.6546	-0.0013798	519.7927708482009	121.53	4.9018	120.5	119.85	124.76	-1.0286					197	93	4	0	0	0	0.22621	2	9317	9292;9317		71.877	5.4482	1	827300	+		31268	31165	25736	25761	34488;34489	34489					0.058426097574511004
LKVEQLFGL	9	Unmodified	_LKVEQLFGL_					0	0	0		ENST00000420716.2_1_3:195591054-195595875:-|nuORF;nc|ENSG00000061938|Q07912|TNK2;ENSG00000061938|ENST00000672887|TNK2	ENST00000420716.2_1_3:195591054-195595875:-|nuORF	ENST00000420716.2_1_3:195591054-195595875:-|nuORF	MSMS	OvCa9_classI_Rep3	3	523.8148803710938	2	523.815867	1045.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.92	1	121.9	121.4	122.4	-1.0286								0	0	0	0.094478	1	9467	9467		71.877	0	1				31269	1274	25737	25762	34490	34490					0.0961979051680828
LKVEQLFGL	9	Unmodified	_LKVEQLFGL_					0	0	0		ENST00000420716.2_1_3:195591054-195595875:-|nuORF;nc|ENSG00000061938|Q07912|TNK2;ENSG00000061938|ENST00000672887|TNK2	ENST00000420716.2_1_3:195591054-195595875:-|nuORF	ENST00000420716.2_1_3:195591054-195595875:-|nuORF	MSMS	OvCa9_classI_Rep3	3	523.8162841796875	2	523.815867	1045.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.19	1	122.16	121.66	122.66	-1.0377								0	0	0	0.16607	1	9498	9498		62.107	0	1				31270	1274	25737	25762	34491	34491					0.0961979051680828
LKVGFENH	8	Unmodified	_LKVGFENH_					0	0	0		tr|A0A7D6ZVD5|A0A7D6ZVD5_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03645PE=4SV=1	tr|A0A7D6ZVD5|A0A7D6ZVD5_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03645PE=4SV=1	tr|A0A7D6ZVD5|A0A7D6ZVD5_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03645PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.2700500488281	2	472.253434	942.492316	-0.45281	-0.00021384	-1.6078	-0.00075931	-2.0607	-0.00097315	472.25247646305894	41.567	0.65125	41.567	41.33	41.982	0					30	14	3	0	0	0	0.028476	1	2587	2587		42.396	0	1	309030			31271	35800	25738	25763	34492	34492					0.018769181002653568
LKVGLKFGQ	9	Unmodified	_LKVGLKFGQ_					0	0	0			REV__tr|A0A553SGM6|A0A553SGM6_NIACIOrganichydroperoxideresistanceproteinOS=NialliacirculansOX=1397GN=CEQ21_11115PE=3SV=1	REV__tr|A0A553SGM6|A0A553SGM6_NIACIOrganichydroperoxideresistanceproteinOS=NialliacirculansOX=1397GN=CEQ21_11115PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.3040771484375	2	495.310752	988.606951	1.4304	0.00070849	-1.9001	-0.00094114	-0.4697	-0.00023265	495.3095771562531	129.44	0.49452	127.98	127.74	128.24	-1.4565					14	9	2	0	0	0	0.027462	1	12416	12416		11.511	0	1	10012	+		31272	29720	25739	25764	34493	34493					0.11219227582228086
LKVGLVITL	9	Unmodified	_LKVGLVITL_					0	0	0		MER94_dup265|chr1:206068089-206068208:+|1.1667204465376202|0.0765814936404858|3.93|416.0|7|2|anti-sense	MER94_dup265|chr1:206068089-206068208:+|1.1667204465376202|0.0765814936404858|3.93|416.0|7|2|anti-sense	MER94_dup265|chr1:206068089-206068208:+|1.1667204465376202|0.0765814936404858|3.93|416.0|7|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.32110595703125	2	478.331153	954.647754	-0.37561	-0.00017967	-3.6258	-0.0017343	-4.0014	-0.001914	478.3287090008208	101.34	1.1305	99.074	98.792	99.923	-2.2665					46	22	3	0	0	0	0.027462	1	9165	9165		15.642	0	1	143880			31273	14836	25740	25765	34494	34494					0.16861568901833834
LKVKLERSL	9	Unmodified	_LKVKLERSL_					0	0	0			REV__nc|ENSG00000176155|Q2TAC2-2|CCDC57	REV__nc|ENSG00000176155|Q2TAC2-2|CCDC57	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.79541015625	2	543.355691	1084.69683	2.2714	0.0012342	3.23	0.001755	5.5014	0.0029892	543.3572371398469	108.24	0.47139	108.24	108.07	108.54	0					17	10	2	0	0	0	0.027462	1	12266	12266		32.812	3.6629	1	360870	+		31274	21934	25741	25766	34495	34495					0.1578685719080113
LKVKQGLFE	9	Unmodified	_LKVKQGLFE_					0	0	0			REV__RAP1GAP|p.Y317Mfs*52|1|0.25|ENSG00000076864|chr1:21610170-21610171|-/GGCAT|frameshift_variant	REV__RAP1GAP|p.Y317Mfs*52|1|0.25|ENSG00000076864|chr1:21610170-21610171|-/GGCAT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.3217163085938	2	531.321317	1060.62808	-2.3073	-0.0012259	2.3615	0.0012547	0.054154	2.8773E-05	531.3224308363493	124.85	1.1856	123.46	123.13	124.31	-1.3908					58	22	3	0	0	0	0.50149	1	11852	11852		42.396	1.618	1	153300	+		31275	16999	25742	25767	34496	34496					0.10019192891104467
LKVKQGLFE	9	Unmodified	_LKVKQGLFE_					0	0	0			REV__RAP1GAP|p.Y317Mfs*52|1|0.25|ENSG00000076864|chr1:21610170-21610171|-/GGCAT|frameshift_variant	REV__RAP1GAP|p.Y317Mfs*52|1|0.25|ENSG00000076864|chr1:21610170-21610171|-/GGCAT|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	531.321317	1060.62808	-0.73937	-0.00039284	0.89499	0.00047553	0.15562	8.2683E-05	531.3216003938595	123.35	1.3799	123.13	122.86	124.24	-0.21888	-0.21372	0.00054716	NaN	42.396	59	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147300	+		31276	16999	25742	25767							0.10019192891104467
LKVKQGLFE	9	Unmodified	_LKVKQGLFE_					0	0	0			REV__RAP1GAP|p.Y317Mfs*52|1|0.25|ENSG00000076864|chr1:21610170-21610171|-/GGCAT|frameshift_variant	REV__RAP1GAP|p.Y317Mfs*52|1|0.25|ENSG00000076864|chr1:21610170-21610171|-/GGCAT|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	531.321317	1060.62808	1.6744	0.00088962	-1.45	-0.00077039	0.2244	0.00011923	531.3203541019622	124.49	1.3557	123.44	123.07	124.42	-1.0481	0.096971	-0.0019447	NaN	42.396	65	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152910	+		31277	16999	25742	25767							0.10019192891104467
LKVLAEGLR	9	Unmodified	_LKVLAEGLR_					0	0	0		ENST00000291906.4_1_9:131465114-131467624:+|nuORF	ENST00000291906.4_1_9:131465114-131467624:+|nuORF	ENST00000291906.4_1_9:131465114-131467624:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	499.82318115234375	2	499.821484	997.628415	0.21981	0.00010987	0.309	0.00015444	0.52881	0.00026431	499.8213960381687	103.37	0.71323	103.37	103.1	103.81	0					35	16	3	0	0	0	0.16562	1	11558	11558		82.241	2.5279	1	923850			31278	10098	25743	25768	34497	34497					0.1295061261093906
LKVLIGVRPRR	11	Unmodified	_LKVLIGVRPRR_					0	0	0			REV__ENST00000483778.5_1_2:242593961-242598937:+|nuORF	REV__ENST00000483778.5_1_2:242593961-242598937:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	436.2610168457031	3	436.297979	1305.87211	0.06531	2.8495E-05	-3.7652	-0.0016427	-3.6998	-0.0016142	436.2960678322878	64.213	0.47459	61.489	61.389	61.864	-2.7245					13	8	2	0	0	0	0.026174	1	4912	4912		12.433	0	1	14246	+		31279	26538	25744	25769	34498	34498					0.23140696775681135
LKVLYKEF	8	Unmodified	_LKVLYKEF_					0	0	0			REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.2692260742188	2	520.312961	1038.61137	-0.84107	-0.00043762	-1.5603	-0.00081182	-2.4013	-0.0012494	520.31226925003	91.773	1.2904	89.749	88.979	90.27	-2.0241					42	25	2	0	0	0	0.028476	1	5821	5821		33.516	14.156	1	32295	+		31280	18180	25745	25770	34499	34499					0.09360692005134297
LKVMFYSRNE	10	Unmodified	_LKVMFYSRNE_					0	0	0			REV__tr|A0A7D6VPL6|A0A7D6VPL6_9CLOTATP-dependentDNAhelicaseRecGC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17315PE=4SV=1	REV__tr|A0A7D6VPL6|A0A7D6VPL6_9CLOTATP-dependentDNAhelicaseRecGC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17315PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	430.2409362792969	3	429.556907	1285.64889	0.24399	0.00010481	1.5704	0.00067456	1.8143	0.00077937	429.5575286944515	32.772	0.33841	32.772	32.651	32.989	0					10	6	2	0	0	0	0.027062	1	1460	1460		20.03	0	1	49298	+		31281	31259	25746	25771	34500	34500					0.01749415208450955
LKVQLPHAGKF	11	Unmodified	_LKVQLPHAGKF_					0	0	0		nc|ENSG00000174611|Q8NBH2-3|KY;ENSG00000174611|ENST00000423778|KY	nc|ENSG00000174611|Q8NBH2-3|KY	nc|ENSG00000174611|Q8NBH2-3|KY	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.2110595703125	3	413.252036	1236.73428	0.0052967	2.1889E-06	-4.2322	-0.001749	-4.2269	-0.0017468	413.25000650796585	49.893	0.17591	49.893	49.768	49.944	0					5	3	2	0	0	0	0.026033	1	3758	3758		22.562	7.8679	1	32938			31282	7478	25747	25772	34501	34501					0.12537948456406411
LKVQPKKLP	9	Unmodified	_LKVQPKKLP_					0	0	0		ENSG00000136381|ENST00000258886|IREB2;nc|ENSG00000136381|P48200-2|IREB2	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.3021850585938	2	525.855327	1049.6961	-0.92881	-0.00048842	0.552	0.00029027	-0.37681	-0.00019815	525.8554448125534	74.651	2.1276	72.241	71.351	73.479	-2.4106					100	42	3	0	0	0	0.027418	1	3648	3648		68.787	4.5796	1	112250			31283	4487	25748	25773	34502	34502					0.17324062541752028
LKVQPRGPL	9	Unmodified	_LKVQPRGPL_					0	0	0			REV__CPD-NSRP1|1|fusion;REV__CPD-MYL4|1|fusion	REV__CPD-NSRP1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.3194885253906	2	504.321651	1006.62875	-0.94062	-0.00047438	-3.332	-0.0016804	-4.2726	-0.0021548	504.3198291935092	144.23	1.5675	142.79	142.43	143.99	-1.4357					72	29	4	0	0	0	0.70177	1	14128	14128		17.365	0.89182	1	140800	+		31284	16231;16230	25749	25774	34503	34503					0.12570032330802405
LKVRRGRG	8	Unmodified	_LKVRRGRG_					0	0	0			REV__ENST00000577066.2_1_17:79004653-79005004:-|nuORF	REV__ENST00000577066.2_1_17:79004653-79005004:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.2562255859375	2	471.30941	940.604266	0.40186	0.0001894	-3.5719	-0.0016835	-3.1701	-0.0014941	471.30776232636237	46.132	0.25653	46.132	46.069	46.326	0					8	5	2	0	0	0	0.028476	1	3256	3256		19.36	4.6959	1	90189	+		31285	27788	25750	25775	34504	34504					0.13158816967938947
LKVRVLAT	8	Unmodified	_LKVRVLAT_					0	0	0			REV__nc|ENSG00000184226|Q9HC56-2|PCDH9	REV__nc|ENSG00000184226|Q9HC56-2|PCDH9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.2702941894531	2	450.30547	898.596387	0.72038	0.00032439	1.626	0.00073218	2.3463	0.0010566	450.3041531292571	61.736	0.41927	58.278	58.103	58.523	-3.4577					13	8	3	0	0	0	0.028476	1	4273	4273		38.806	0	1	65954	+		31286	22415	25751	25776	34505	34505					0.1430324492780528
LKVSMWFK	8	Unmodified	_LKVSMWFK_					0	0	0		ENST00000244769.8_1_6:16305202-16305265:-|nuORF	ENST00000244769.8_1_6:16305202-16305265:-|nuORF	ENST00000244769.8_1_6:16305202-16305265:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	519.793212890625	2	519.793881	1037.57321	-0.83173	-0.00043233	0.73197	0.00038047	-0.099769	-5.1859E-05	519.7941003158112	120.39	3.5079	120.22	119.69	123.2	-0.17137					148	70	4	0	0	0	0.60331	1	11631	11631		63.306	4.5243	1	553870			31287	9772	25752	25777	34506	34506					0.0559248281881537
LKVSMWFK	8	Unmodified	_LKVSMWFK_					0	0	0		ENST00000244769.8_1_6:16305202-16305265:-|nuORF	ENST00000244769.8_1_6:16305202-16305265:-|nuORF	ENST00000244769.8_1_6:16305202-16305265:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	519.79345703125	2	519.793881	1037.57321	1.5307	0.00079564	-1.7782	-0.00092427	-0.24748	-0.00012864	519.7927708482009	121.53	4.9018	120.5	119.85	124.76	-1.0286					197	93	4	0	0	0	0.57734	1	9278	9278		68.787	1.2932	1	827300			31288	9772	25752	25777	34507	34507					0.0559248281881537
LKVSNVPGP	9	Unmodified	_LKVSNVPGP_					0	0	0		nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1;nc|ENSG00000116127|Q8TCU4-3|ALMS1	nc|ENSG00000116127|Q8TCU4-2|ALMS1	nc|ENSG00000116127|Q8TCU4-2|ALMS1	MULTI-MSMS	OvCa99_classI_Rep5	1	455.772705078125	2	455.77146	909.528367	1.8003	0.00082051	0.62041	0.00028276	2.4207	0.0011033	455.771619164626	119.93	0.43976	119.93	119.7	120.14	0					13	9	2	0	0	0	0.16562	1	13776	13776		82.241	16.437	1	147250			31289	3155	25753	25778	34508	34508					0.06998375277134983
LKVTGIGSLHS	11	Unmodified	_LKVTGIGSLHS_					0	0	0		chr10:52974800-52975740|202|45.85|0.69|6.05|-|2|LINC02672,LINC02672|2;chr10:52974800-52975649|140|10.67|0.07|7.18|-|2|LINC02672,None|1	chr10:52974800-52975740|202|45.85|0.69|6.05|-|2|LINC02672,LINC02672|2	chr10:52974800-52975740|202|45.85|0.69|6.05|-|2|LINC02672,LINC02672|2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.7736206054688	2	556.327131	1110.63971	0.50941	0.0002834	-1.3393	-0.00074509	-0.82988	-0.00046169	556.3262468004868	98.55	1.8931	96.171	95.317	97.21	-2.3786					66	36	3	0	0	0	0.025297	1	8664	8664		59.931	12.015	1	104550			31290	275	25754	25779	34509	34509					0.08881389914404281
LKVTGIGSLHS	11	Unmodified	_LKVTGIGSLHS_					0	0	0		chr10:52974800-52975740|202|45.85|0.69|6.05|-|2|LINC02672,LINC02672|2;chr10:52974800-52975649|140|10.67|0.07|7.18|-|2|LINC02672,None|1	chr10:52974800-52975740|202|45.85|0.69|6.05|-|2|LINC02672,LINC02672|2	chr10:52974800-52975740|202|45.85|0.69|6.05|-|2|LINC02672,LINC02672|2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	556.327131	1110.63971	0.725	0.00040334	-0.17362	-9.6592E-05	0.55138	0.00030675	556.3261575766845	97.114	1.1324	96.156	95.825	96.958	-0.95857	-0.040481	0.0006845	NaN	59.931	66	22	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109880			31291	275	25754	25779							0.08881389914404281
LKVTGIGSLHS	11	Unmodified	_LKVTGIGSLHS_					0	0	0		chr10:52974800-52975740|202|45.85|0.69|6.05|-|2|LINC02672,LINC02672|2;chr10:52974800-52975649|140|10.67|0.07|7.18|-|2|LINC02672,None|1	chr10:52974800-52975740|202|45.85|0.69|6.05|-|2|LINC02672,LINC02672|2	chr10:52974800-52975740|202|45.85|0.69|6.05|-|2|LINC02672,LINC02672|2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	556.327131	1110.63971	-0.83487	-0.00046446	-0.3315	-0.00018442	-1.1664	-0.00064888	556.3266959863793	98.022	1.0642	96.262	95.818	96.882	-1.7595	0.065678	0.00050884	NaN	59.931	39	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119380			31292	275	25754	25779							0.08881389914404281
LKVTNVTK	8	Unmodified	_LKVTNVTK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.2491455078125	2	451.78711	901.559667	0.19561	8.8374E-05	0.54324	0.00024543	0.73885	0.0003338	451.78721801879595	52.736	0.34624	49.528	49.4	49.746	-3.208					8	6	2	0	0	0	0.028476	1	3188	3188		15.642	0	1	9312.3			31293	5793;36288	25755	25780	34510	34510					0.10494948311236385
LKVTQASIKA	10	Unmodified	_LKVTQASIKA_					0	0	0		tr|A0A553SFN3|A0A553SFN3_NIACIArgininebiosynthesisbifunctionalproteinArgJOS=NialliacirculansOX=1397GN=argJPE=3SV=1	tr|A0A553SFN3|A0A553SFN3_NIACIArgininebiosynthesisbifunctionalproteinArgJOS=NialliacirculansOX=1397GN=argJPE=3SV=1	tr|A0A553SFN3|A0A553SFN3_NIACIArgininebiosynthesisbifunctionalproteinArgJOS=NialliacirculansOX=1397GN=argJPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	530.3331909179688	2	529.832049	1057.64954	0.017891	9.4794E-06	-1.2154	-0.00064396	-1.1975	-0.00063448	529.8337061971487	131.67	1.3911	130.54	130.24	131.63	-1.1249					78	27	4	0	0	0	0.73063	1	10516	10516		27.047	1.4733	1	122000			31294	33055	25756	25781	34511	34511					0.12302577919786017
LKVWKTNL	8	Unmodified	_LKVWKTNL_					0	0	0		chr10:5773941-5783324|88|60.59|0.56|6.74|-|0|TE_info:L1PBa,L1PBa_dup1536,L1,LINE,donor,-,5783324,5784958|GDI2,None|17	chr10:5773941-5783324|88|60.59|0.56|6.74|-|0|TE_info:L1PBa,L1PBa_dup1536,L1,LINE,donor,-,5783324,5784958|GDI2,None|17	chr10:5773941-5783324|88|60.59|0.56|6.74|-|0|TE_info:L1PBa,L1PBa_dup1536,L1,LINE,donor,-,5783324,5784958|GDI2,None|17	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.7838134765625	2	501.310752	1000.60695	-0.25199	-0.00012632	4.1127	0.0020617	3.8607	0.0019354	501.3127614943336	69.38	0.77719	69.38	69.106	69.883	0					31	18	2	0	0	0	0.028476	1	6570	6570		53.351	0	1	996840			31295	276	25757	25782	34512	34512					0.10667227582223404
LKVWLGLA	8	Unmodified	_LKVWLGLA_					0	0	0		nc|ENSG00000138759|Q86XX4|FRAS1;ENSG00000138759|ENST00000512123|FRAS1;nc|ENSG00000138759|Q86XX4-4|FRAS1;nc|ENSG00000138759|Q86XX4-6|FRAS1;FRAS1-MGST2|1|fusion;nc|ENSG00000138759|Q86XX4-5|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1;nc|ENSG00000138759|Q86XX4-5|FRAS1	nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.2702941894531	2	450.289288	898.564024	0.70872	0.00031913	2.0304	0.00091429	2.7392	0.0012334	450.2901220220295	61.814	0.46703	58.357	58.103	58.57	-3.4577					19	9	3	0	0	0	0.028476	1	4273	4273		12.959	0	1	134880			31296	4723;15048	25758	25783	34513	34513					0.11068457524788755
LKWEGEPI	8	Unmodified	_LKWEGEPI_					0	0	0			REV__tr|A0A553SJR8|A0A553SJR8_NIACIpullulanaseOS=NialliacirculansOX=1397GN=pulAPE=4SV=1	REV__tr|A0A553SJR8|A0A553SJR8_NIACIpullulanaseOS=NialliacirculansOX=1397GN=pulAPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.8020324707031	2	486.263468	970.512382	2.0337	0.00098889	-2.058	-0.0010007	-0.024342	-1.1837E-05	486.26236055201304	82.632	0.80991	82.632	82.394	83.204	0					28	18	3	0	0	0	0.028476	1	8627	8627		82.305	27.529	1	175630	+		31297	30034	25759	25784	34514	34514					0.025946690402406603
LKWFVLTL	8	Unmodified	_LKWFVLTL_					0	0	0			REV__ENSG00000144867|ENST00000678299|SRPRB	REV__ENSG00000144867|ENST00000678299|SRPRB	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.7658386230469	2	510.318046	1018.62154	0.22745	0.00011607	-4.0533	-0.0020685	-3.8259	-0.0019524	510.3159163456503	62.539	0.32674	62.539	62.294	62.621	0					12	7	2	0	0	0	0.028476	1	5539	5539		12.207	5.4713	1	185090	+		31298	19941	25760	25785	34515	34515					0.11297299730358645
LKWIHKALE	9	Unmodified	_LKWIHKALE_					0	0	0		ENSG00000108312|ENST00000436088|UBTF	ENSG00000108312|ENST00000436088|UBTF	ENSG00000108312|ENST00000436088|UBTF	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2759399414062	2	569.342584	1136.67061	-0.086503	-4.925E-05	-3.7998	-0.0021634	-3.8863	-0.0022127	569.3391986608709	56.581	0.28482	56.581	56.459	56.744	0					9	6	2	0	0	0	0.027462	1	4708	4708		37.159	0	1	79017			31299	2645	25761	25786	34516	34516					0.10774588019285147
LKWKLGPMTAQ	11	Unmodified	_LKWKLGPMTAQ_					0	0	0			REV__ENST00000539985.5_1_19:19145022-19148494:+|nuORF	REV__ENST00000539985.5_1_19:19145022-19148494:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	424.91094970703125	3	424.909281	1271.70601	1.5731	0.00066844	1.3255	0.0005632	2.8986	0.0012316	424.909790944091	66.75	2.7106	63.862	63.528	66.239	-2.8873					103	53	4	0	0	0	0.69589	1	2778	2778		31.068	0.49928	1	164630	+		31300	27342	25762	25787	34517	34517					0.08102882484831753
LKWKSDSYF	9	Unmodified	_LKWKSDSYF_					0	0	0		ENSG00000175445|ENST00000650287|LPL	ENSG00000175445|ENST00000650287|LPL	ENSG00000175445|ENST00000650287|LPL	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.8207397460938	2	587.300581	1172.58661	1.9723	0.0011583	3.9919	0.0023444	5.9642	0.0035028	587.3034225360823	78.313	0.74442	78.313	77.924	78.668	0					38	17	4	0	0	0	0.027462	1	7888	7888		42.396	16.946	1	2252100			31301	7544	25763	25788	34518	34518					0.007220121317459416
LKWKSDSYF	9	Unmodified	_LKWKSDSYF_					0	0	0		ENSG00000175445|ENST00000650287|LPL	ENSG00000175445|ENST00000650287|LPL	ENSG00000175445|ENST00000650287|LPL	MULTI-MATCH	OvCa9_classI_Rep3	3		2	587.300581	1172.58661	-1.4984	-0.00088003	4.6455	0.0027283	3.1471	0.0018483	587.3041943256566	80.418	0.30618	78.096	77.979	78.286	-2.3226	-0.10888	0.00063275	NaN	34.173	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11711			31302	7544	25763	25788							0.007220121317459416
LKWLSYKWSKV	11	Unmodified	_LKWLSYKWSKV_					0	0	0			REV__L1PA8A_dup160|chr1:247133953-247136664:+|1.5135014545884105|0.4971293307696565|1.61|429.0|53|2|sense	REV__L1PA8A_dup160|chr1:247133953-247136664:+|1.5135014545884105|0.4971293307696565|1.61|429.0|53|2|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.2896728515625	3	479.946612	1436.81801	-0.95678	-0.0004592	-2.7267	-0.0013087	-3.6835	-0.0017679	479.94524109867837	42.873	0.41925	39.865	39.696	40.115	-3.0074					11	7	2	0	0	0	0.026033	1	2048	2048		17.167	7.5206	1	9021.8	+		31303	28584	25764	25789	34519	34519					0.11707059833452149
LKWLSYKWSKV	11	Unmodified	_LKWLSYKWSKV_					0	0	0			REV__L1PA8A_dup160|chr1:247133953-247136664:+|1.5135014545884105|0.4971293307696565|1.61|429.0|53|2|sense	REV__L1PA8A_dup160|chr1:247133953-247136664:+|1.5135014545884105|0.4971293307696565|1.61|429.0|53|2|sense	MULTI-MATCH	OvCa9_classI_Rep2	2		3	479.946612	1436.81801	0.61186	0.00029366	-2.5911	-0.0012436	-1.9793	-0.00094994	480.28018014371315	42.651	0.34516	39.942	39.72	40.065	-2.7097	0.038201	0.0001037	NaN	12.433	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16829	+		31304	28584	25764	25789							0.11707059833452149
LKWRDIHA	8	Unmodified	_LKWRDIHA_					0	0	0		ENST00000462436.1_1_7:97484616-97487685:-|nuORF	ENST00000462436.1_1_7:97484616-97487685:-|nuORF	ENST00000462436.1_1_7:97484616-97487685:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	519.7935791015625	2	519.795801	1037.57705	-0.83173	-0.00043233	-2.9616	-0.0015394	-3.7934	-0.0019718	519.7941003158112	120.39	3.5079	120.22	119.69	123.2	-0.17137					148	70	4	0	0	0	0.64026	1	11603	11603		55.504	6.0627	1	553870			31305	12202	25765	25790	34520	34520					0.05976288636884419
LKWRKLPD	8	Unmodified	_LKWRKLPD_					0	0	0		ENSG00000159256|ENST00000400485|MORC3	ENSG00000159256|ENST00000400485|MORC3	ENSG00000159256|ENST00000400485|MORC3	MULTI-SECPEP	OvCa9_classI_Rep3	3	527.8170776367188	2	528.321651	1054.62875	0.13672	7.2231E-05	1.292	0.00068257	1.4287	0.0007548	528.8257345910791	105.55	1.8936	104.2	103.83	105.73	-1.3482					112	36	5	0	0	0	0.028476	1	7423	7423		40.573	8.6178	1	902840			31306	6001	25766	25791	34521	34521					0.10362032330772308
LKWRQQAYEV	10	Unmodified	_LKWRQQAYEV_					0	0	0			REV__nc|ENSG00000175348|Q9NQ34-2|TMEM9B	REV__nc|ENSG00000175348|Q9NQ34-2|TMEM9B	MULTI-SECPEP	OvCa99_classI_Rep5	1	440.2516174316406	3	440.906816	1319.69862	0.59419	0.00026198	0.83279	0.00036718	1.427	0.00062916	441.242865338749	64.338	0.53951	64.338	64.17	64.71	0					20	12	2	0	0	0	0.027138	1	5879	5879		12.957	3.3113	1	433300	+		31307	21893	25767	25792	34522	34522					0.05155866208747284
LKWSSSPSP	9	Unmodified	_LKWSSSPSP_					0	0	0			REV__PAX2|p.D204Ffs*31|1|0.04|ENSG00000075891|chr10:100781357-100781358|-/GTTTGCCCAGCCCCAGGGAT|frameshift_variant	REV__PAX2|p.D204Ffs*31|1|0.04|ENSG00000075891|chr10:100781357-100781358|-/GTTTGCCCAGCCCCAGGGAT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.7723693847656	2	494.758549	987.502546	-0.87209	-0.00043147	-2.8783	-0.001424	-3.7503	-0.0018555	494.75700140431536	52.801	1.0363	49.987	49.542	50.578	-2.8139					29	20	2	0	0	0	0.027051	1	3498	3498		58.782	8.7574	1	35356	+		31308	29278	25768	25793	34523	34523					0.008294810348502324
LKWTKEVTRRD	11	Unmodified	_LKWTKEVTRRD_					0	0	0			REV__nc|ENSG00000114423|Q13191-3|CBLB	REV__nc|ENSG00000114423|Q13191-3|CBLB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.7655334472656	3	477.940409	1430.7994	-0.42016	-0.00020081	-0.19411	-9.2774E-05	-0.61427	-0.00029358	477.94032469001024	46.187	1.1896	43.115	42.876	44.065	-3.0724					62	22	4	0	0	0	0.02625	1	2387	2387		13.508	0	1	281230	+		31309	18187	25769	25794	34524	34524					0.10122898191593777
LKWVLLFEF	9	Unmodified	_LKWVLLFEF_					0	0	0			REV__ENST00000468001.1_1_3:183354395-183368101:+|nuORF	REV__ENST00000468001.1_1_3:183354395-183368101:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	597.8493041992188	2	597.84971	1193.68487	2.2136	0.0013234	-3.2509	-0.0019436	-1.0373	-0.00062018	597.8476686982144	85.604	1.0585	85.604	85.292	86.35	0					70	25	4	0	0	0	0.24951	1	8987	8987		68.787	6.6794	1	6582400	+		31310	26215	25770	25795	34525	34525					0.09577240447606528
LKYDGLKKF	9	Unmodified	_LKYDGLKKF_					0	0	0		tr|A0A7D6VXB9|A0A7D6VXB9_9CLOTPyridoxamine5'-phosphateoxidasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12325PE=4SV=1	tr|A0A7D6VXB9|A0A7D6VXB9_9CLOTPyridoxamine5'-phosphateoxidasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12325PE=4SV=1	tr|A0A7D6VXB9|A0A7D6VXB9_9CLOTPyridoxamine5'-phosphateoxidasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12325PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.7847900390625	2	556.329142	1110.64373	2.1939	0.0012205	-2.7556	-0.001533	-0.56177	-0.00031253	556.3275426423406	96.774	0.59023	96.774	96.418	97.008	0					30	13	3	0	0	0	0.027418	1	10597	10597		52.937	5.2794	1	1600100			31311	35273	25771	25796	34526	34526					0.09283479408145467
LKYGGVHDP	9	Unmodified	_LKYGGVHDP_					0	0	0			REV__ENSG00000004864|ENST00000265631|SLC25A13	REV__ENSG00000004864|ENST00000265631|SLC25A13	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.7666015625	2	493.258717	984.50288	0.098446	4.8559E-05	2.7581	0.0013605	2.8565	0.001409	493.26026333730243	63.507	0.79462	63.507	63.179	63.974	0					27	19	2	0	0	0	0.027426	1	5726	5726		47.657	0	1	1271000	+		31312	16384	25772	25797	34527	34527					0.010009007547068904
LKYIELTK	8	Unmodified	_LKYIELTK_					0	0	0			REV__ENST00000554383.5_3_14:21702260-21737544:-|nuORF	REV__ENST00000554383.5_3_14:21702260-21737544:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	504.2797546386719	2	504.310418	1006.60628	-1.4609	-0.00073676	-0.62591	-0.00031565	-2.0868	-0.0010524	504.3110537466999	50.849	0.76446	47.675	47.308	48.072	-3.1734					9	6	2	0	0	0	0.028476	1	2953	2953		34.173	0	1	19532	+		31313	27527	25773	25798	34528	34528					0.1032438814249872
LKYIEPEIQ	9	Unmodified	_LKYIEPEIQ_					0	0	0			REV__tr|A0A553SG39|A0A553SG39_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_10135PE=4SV=1	REV__tr|A0A553SG39|A0A553SG39_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_10135PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	566.8150024414062	2	566.816064	1131.61758	-0.24812	-0.00014064	-0.2703	-0.00015321	-0.51842	-0.00029385	566.8159504694337	109.72	2.4602	108.58	108.24	110.71	-1.1444					116	47	3	0	0	0	0.44568	1	7914	7914		47.657	6.8792	1	1478800	+		31314	29657	25774	25799	34529	34529					0.057031654459933634
LKYIRELL	8	Unmodified	_LKYIRELL_					0	0	0			REV__tr|A0A553SIW1|A0A553SIW1_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_15625PE=4SV=1	REV__tr|A0A553SIW1|A0A553SIW1_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_15625PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.7766723632812	2	524.331685	1046.64882	-0.066144	-3.4681E-05	-0.52905	-0.0002774	-0.59519	-0.00031208	524.3313118257068	45.264	0.68979	45.264	44.977	45.667	0					30	15	3	0	0	0	0.028476	1	3113	3113		24.203	0	1	147970	+		31315	29937	25775	25800	34530	34530					0.1273578327075029
LKYKKNVT	8	Unmodified	_LKYKKNVT_					0	0	0		tr|A0A7D6VTG6|A0A7D6VTG6_9CLOTUndecaprenyl-diphosphataseOS=ClostridiumintestinaleOX=36845GN=uppPPE=3SV=1	tr|A0A7D6VTG6|A0A7D6VTG6_9CLOTUndecaprenyl-diphosphataseOS=ClostridiumintestinaleOX=36845GN=uppPPE=3SV=1	tr|A0A7D6VTG6|A0A7D6VTG6_9CLOTUndecaprenyl-diphosphataseOS=ClostridiumintestinaleOX=36845GN=uppPPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	497.759033203125	2	497.30821	992.601866	-0.88265	-0.00043895	1.741	0.00086582	0.85836	0.00042687	497.3083271189461	63.848	1.6789	61.103	60.586	62.265	-2.7444					77	31	4	0	0	0	0.028476	1	4967	4967		24.203	0	1	259240			31316	35113	25776	25801	34531	34531					0.10526923719623937
LKYLLTTKGAS	11	Unmodified	_LKYLLTTKGAS_					0	0	0			REV__ARL11|p.Q67Afs*27|2|0.11|ENSG00000152213|chr13:49630639-49630640|-/G|frameshift_variant	REV__ARL11|p.Q67Afs*27|2|0.11|ENSG00000152213|chr13:49630639-49630640|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	597.855224609375	2	597.858264	1193.70197	-3.1766	-0.0018991	0.037639	2.2503E-05	-3.1389	-0.0018766	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.72485	1	14834	14834		17.468	0	1	436470	+		31317	15660	25777	25802	34532	34532					0.11287116262769814
LKYLMYLDL	9	Unmodified	_LKYLMYLDL_					0	0	0			REV__ENST00000448213.2_1_1:81967523-81968357:+|nuORF	REV__ENST00000448213.2_1_1:81967523-81968357:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	585.3501586914062	2	586.325211	1170.63587	-1.2827	-0.00075205	3.1834	0.0018665	1.9008	0.0011145	586.3272821572797	72.273	1.3853	69.67	69.424	70.81	-2.6023					53	27	3	0	0	0	0.027462	1	3511	3511		29.15	0	1	118510	+		31318	22120	25778	25803	34533	34533					0.05737584096345927
LKYLPGPLQ	9	Unmodified	_LKYLPGPLQ_					0	0	0		ENSG00000145920|ENST00000393745|CPLX2	ENSG00000145920|ENST00000393745|CPLX2	ENSG00000145920|ENST00000393745|CPLX2	MULTI-SECPEP	OvCa9_classI_Rep2	2	514.311279296875	2	514.810585	1027.60662	-0.53026	-0.00027298	3.937	0.0020268	3.4067	0.0017538	514.8125257409831	104.29	2.0773	103.72	102.78	104.86	-0.57639					75	41	3	0	0	0	0.027462	1	9649	9649		37.159	0	1	274470			31319	5254	25779	25804	34534	34534					0.09391807862357382
LKYNFVLYI	9	Unmodified	_LKYNFVLYI_					0	0	0			REV__tr|A0A7D7AFP4|A0A7D7AFP4_9CLOTMetallo-beta-lactamasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06455PE=4SV=1	REV__tr|A0A7D7AFP4|A0A7D7AFP4_9CLOTMetallo-beta-lactamasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06455PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.803466796875	2	586.839342	1171.66413	1.8463	0.0010835	3.8928	0.0022845	5.7392	0.003368	586.8426105406488	110.34	1.1221	110.34	109.68	110.8	0					35	24	2	0	0	0	0.027449	1	12446	12446		40.573	0	1	721350	+		31320	32718	25780	25805	34535	34535					0.08516650067963383
LKYPLIHGQ	9	Unmodified	_LKYPLIHGQ_					0	0	0		ENSG00000164088|ENST00000323588|PPM1M;nc|ENSG00000164088|Q96MI6-3|PPM1M;ENST00000482724.1_1_3:52282581-52283827:+|nuORF;ENST00000489606.5_1_3:52282326-52283827:+|nuORF;nc|ENSG00000164088|Q96MI6-4|PPM1M;nc|ENSG00000164088|Q96MI6-1|PPM1M	ENSG00000164088|ENST00000323588|PPM1M	ENSG00000164088|ENST00000323588|PPM1M	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.8045654296875	2	534.813659	1067.61277	-1.0824	-0.0005789	2.6163	0.0013992	1.5339	0.00082034	534.814750271298	65.727	0.20578	65.727	65.625	65.831	0					8	4	2	0	0	0	0.027462	1	6047	6047		38.806	0	1	487820			31321	6406	25781	25806	34536	34536					0.08166326093896714
LKYRHKQV	8	Unmodified	_LKYRHKQV_					0	0	0		nc|ENSG00000151952|Q14C87-2|TMEM132D;TMEM132D|p.T1049Afs*28|1|0.05|ENSG00000151952|chr12:129074030-129074031|-/ACTGTACTCTGGAATGTGTGCGTCGATGC|frameshift_variant;ENSG00000151952|ENST00000422113|TMEM132D;ENSG00000181234|ENST00000435159|TMEM132C	nc|ENSG00000151952|Q14C87-2|TMEM132D	nc|ENSG00000151952|Q14C87-2|TMEM132D	MULTI-SECPEP	OvCa9_classI_Rep3	3	535.814453125	2	536.324725	1070.6349	0.23882	0.00012808	-2.5251	-0.0013542	-2.2862	-0.0012262	536.3233087512571	96.153	0.54452	94.324	94.027	94.571	-1.8286					24	10	3	0	0	0	0.028476	1	6332	6332		31.955	2.7848	1	202330			31322	5598	25782	25807	34537	34537					0.10240550562321005
LKYRVKEI	8	Unmodified	_LKYRVKEI_					0	0	0		nc|ENSG00000070759|Q96S53-3|TESK2;nc|ENSG00000070759|Q96S53-2|TESK2;ENSG00000070759|ENST00000372086|TESK2	nc|ENSG00000070759|Q96S53-3|TESK2	nc|ENSG00000070759|Q96S53-3|TESK2	MULTI-MSMS	OvCa9_classI_Rep2	2	524.8263549804688	2	524.829309	1047.64407	-4.3888	-0.0023034	0.2202	0.00011557	-4.1686	-0.0021878	524.8292785030237	156.45	1.4045	156.23	155.89	157.3	-0.22696					98	36	4	0	0	0	0.75661	1	15960	15960		19.36	1.0356	1	556080			31323	1434	25783	25808	34538	34538					0.12214899127980061
LKYSIVFIA	9	Unmodified	_LKYSIVFIA_					0	0	0		CON__P01045-1;CON__Q2KJ62;CON__P01044-1	CON__P01045-1	CON__P01045-1	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.8253784179688	2	527.320786	1052.62702	-1.2258	-0.00064638	-2.402	-0.0012666	-3.6278	-0.001913	527.319431010988	100.45	0.64418	99.617	99.113	99.757	-0.83051					21	12	2	0	0	0	0.027462	1	9202	9202		39.253	11.371	1	224170		+	31324	614	25784	25809	34539	34539					0.10280978522200712
LKYSQRKI	8	Unmodified	_LKYSQRKI_					0	0	0		ENSG00000137077|ENST00000259607|CCL21	ENSG00000137077|ENST00000259607|CCL21	ENSG00000137077|ENST00000259607|CCL21	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.8018188476562	2	518.319109	1034.62366	-1.0944	-0.00056725	1.3276	0.00068813	0.23322	0.00012088	518.3196766420489	66.228	0.54787	66.228	65.984	66.531	0					31	13	3	0	0	0	0.028476	1	6132	6132		55.504	13.108	1	3067600			31325	4553	25785	25810	34540	34540					0.10773728468188892
LKYVTHDAAL	10	Unmodified	_LKYVTHDAAL_					0	0	0			REV__nc|ENSG00000116791|Q08257-3|CRYZ	REV__nc|ENSG00000116791|Q08257-3|CRYZ	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.794189453125	2	565.813856	1129.61316	2.3373	0.0013225	0.14002	7.9223E-05	2.4773	0.0014017	565.81360557782	74.917	0.32802	74.917	74.718	75.046	0					12	7	2	0	0	0	0.026915	1	7450	7450		44.117	5.3107	1	209220	+		31326	18319	25786	25811	34541	34541					0.05353701023091162
LLAAASSPALP	11	Unmodified	_LLAAASSPALP_					0	0	0		ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	ENSG00000110628|ENST00000649076|SLC22A18	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.32305908203125	2	505.797675	1009.5808	-0.66502	-0.00033637	-2.7337	-0.0013827	-3.3987	-0.0017191	506.2973734793382	117	0.78503	115.64	115.3	116.08	-1.3645					23	14	2	0	0	0	0.026056	1	10937	10937		20.947	2.6225	1	21158			31327	2784	25787	25812	34542	34542					0.07638913620087351
LLAALLLRRL	10	Unmodified	_LLAALLLRRL_					0	0	0			REV__nc|ENSG00000173511|P49765-2|VEGFB	REV__nc|ENSG00000173511|P49765-2|VEGFB	MULTI-SECPEP	OvCa9_classI_Rep2	2	576.3536987304688	2	576.402976	1150.7914	-0.22785	-0.00013134	-1.6912	-0.00097482	-1.9191	-0.0011062	576.4020319439032	71.759	0.26027	69.252	69.068	69.329	-2.5071					7	4	2	0	0	0	0.026915	1	5787	5787		27.882	0	1	9148.1	+		31328	21779	25788	25813	34543	34543					0.22203415732792564
LLAALQVN	8	Unmodified	_LLAALQVN_					0	0	0		nc|ENSG00000009765|Q6PHW0-6|IYD;nc|ENSG00000009765|Q6PHW0-5|IYD;nc|ENSG00000009765|Q6PHW0-4|IYD	nc|ENSG00000009765|Q6PHW0-6|IYD	nc|ENSG00000009765|Q6PHW0-6|IYD	MULTI-MSMS	OvCa9_classI_Rep2	2	421.25921630859375	2	421.260728	840.506903	0.30073	0.00012669	-3.3692	-0.0014193	-3.0685	-0.0012926	421.25922240366054	134.3	0.7355	134.07	133.56	134.29	-0.22696					27	14	2	0	0	0	0.74679	1	13296	13296		28.254	0	1	153990			31329	14862	25789	25814	34544	34544					0.08026990248424681
LLAALQVN	8	Unmodified	_LLAALQVN_					0	0	0		nc|ENSG00000009765|Q6PHW0-6|IYD;nc|ENSG00000009765|Q6PHW0-5|IYD;nc|ENSG00000009765|Q6PHW0-4|IYD	nc|ENSG00000009765|Q6PHW0-6|IYD	nc|ENSG00000009765|Q6PHW0-6|IYD	MULTI-MSMS	OvCa9_classI_Rep2	2	421.2597961425781	2	421.260728	840.506903	0.1688	7.111E-05	-3.1201	-0.0013144	-2.9513	-0.0012433	421.2592965587955	134.89	1.4682	134.66	133.66	135.13	-0.22696					55	29	3	0	0	0	0.75241	1	13353	13353		25.45	0	1	378840			31330	14862	25789	25814	34545	34545					0.08026990248424681
LLAAPLGPV	9	Unmodified	_LLAAPLGPV_					0	0	0			REV__ENST00000343730.9_1_9:136213450-136214794:-|nuORF	REV__ENST00000343730.9_1_9:136213450-136214794:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	425.7755126953125	2	425.773471	849.53239	-0.95445	-0.00040638	4.1695	0.0017752	3.215	0.0013689	425.7751660668595	68.762	2.1455	66.142	65.721	67.866	-2.6203					132	42	5	0	0	0	0.68641	1	5433	5433		21.702	6.0661	1	3515300	+		31331	24671	25790	25815	34546	34546					0.10160464770854105
LLAAPVLL	8	Unmodified	_LLAAPVLL_					0	0	0		ENSG00000158158|ENST00000377075|CNNM4	ENSG00000158158|ENST00000377075|CNNM4	ENSG00000158158|ENST00000377075|CNNM4	MULTI-MSMS	OvCa99_classI_Rep5	1	405.27947998046875	2	405.278389	808.542226	1.7928	0.00072657	-0.96277	-0.00039019	0.82999	0.00033638	405.27799811906704	161.03	2.9084	161.03	159.62	162.53	0					81	57	2	0	0	0	0.69862	2	18820	18820;18920		43.626	10.133	1	75161			31332	5935	25791	25816	34547;34548	34547					0.13029652776242528
LLAAQKVI	8	Unmodified	_LLAAQKVI_					0	0	0		ENSG00000082212|ENST00000321341|ME2;nc|ENSG00000082212|P23368-2|ME2	ENSG00000082212|ENST00000321341|ME2	ENSG00000082212|ENST00000321341|ME2	MULTI-MSMS	OvCa9_classI_Rep3	3	428.2867736816406	2	428.286746	854.558939	0.99158	0.00042468	-0.9535	-0.00040837	0.038079	1.6309E-05	428.28619958305893	106.07	1.3284	104.72	104.35	105.68	-1.3482					67	25	4	0	0	0	0.73288	1	7464	7464		35.201	0	1	507380			31333	1673	25792	25817	34549	34549					0.12584153662180597
LLAARPIL	8	Unmodified	_LLAARPIL_					0	0	0			REV__ENST00000537558.5_1_12:132569648-132569726:+|nuORF	REV__ENST00000537558.5_1_12:132569648-132569726:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	433.7950439453125	2	433.794738	865.574923	0.58254	0.0002527	-0.42547	-0.00018457	0.15707	6.8137E-05	433.7944359498501	111.98	2.1215	111.84	111.47	113.59	-0.13961					92	42	4	0	0	0	0.63104	2	10593	10593;10600		57.453	0	1	565240	+		31334	27310	25793	25818	34550;34551	34550					0.13675859899092302
LLAARPIL	8	Unmodified	_LLAARPIL_					0	0	0			REV__ENST00000537558.5_1_12:132569648-132569726:+|nuORF	REV__ENST00000537558.5_1_12:132569648-132569726:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	433.7956237792969	2	433.794738	865.574923	1.6323	0.0007081	-1.4478	-0.00062804	0.18456	8.0061E-05	433.79397915293447	113.07	1.9686	111.99	111.66	113.63	-1.0753					76	38	3	0	0	0	0.57589	3	8279	8279;8285;8302		69.093	0	1	587780	+		31335	27310	25793	25818	34552;34553;34554	34552					0.13675859899092302
LLAARPIL	8	Unmodified	_LLAARPIL_					0	0	0			REV__ENST00000537558.5_1_12:132569648-132569726:+|nuORF	REV__ENST00000537558.5_1_12:132569648-132569726:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	433.7942199707031	2	433.794738	865.574923	1.1641	0.000505	-1.5519	-0.00067321	-0.38776	-0.00016821	433.79394637933103	113.56	1.8167	112.11	111.75	113.57	-1.4461					87	35	4	0	0	0	0.49583	1	10532	10532		77.944	3.4272	1	638440	+		31336	27310	25793	25818	34555	34555					0.13675859899092302
LLAAWTARA	9	Unmodified	_LLAAWTARA_					0	0	0		nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP;nc|ENSG00000142192|P05067-2|APP;ENST00000474136.5_1_21:27382178-27543016:-|nuORF	nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	MULTI-MSMS	OvCa99_classI_Rep5	1	486.7850036621094	2	486.784902	971.55525	2.2322	0.0010866	1.0065	0.00048995	3.2387	0.0015766	486.7850896441106	86.854	0.7448	86.854	86.471	87.216	0					28	17	2	0	0	0	0.030815	2	9176	9176;9188		134.81	51.524	1	686710			31337	4960	25794	25819	34556;34557	34556					0.0683348388831746
LLACRAGGKI	10	Carbamidomethyl (C)	_LLAC(Carbamidomethyl (C))RAGGKI_	LLAC(1)RAGGKI		LLAC(63)RAGGKI		0	1	0			REV__SVA_D_dup912|chr11:73935626-73937666:-|1.861451030615439|0.3832838640500095|2.28|429.0|44|3|sense	REV__SVA_D_dup912|chr11:73935626-73937666:-|1.861451030615439|0.3832838640500095|2.28|429.0|44|3|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	529.8087158203125	2	529.810593	1057.60663	-0.30944	-0.00016395	-4.2835	-0.0022695	-4.593	-0.0024334	529.8082658364003	80.403	1.7105	78.708	78.37	80.08	-1.6951					93	32	4	0	0	0	0.43592	1	6796	6796		63.306	6.5852	1	1665600	+		31338	16063	25795	25820	34558	34558	182				0.080134845907196
LLAEKEQLA	9	Unmodified	_LLAEKEQLA_					0	0	0			REV__ENSG00000154864|ENST00000674853|PIEZO2	REV__ENSG00000154864|ENST00000674853|PIEZO2	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.79541015625	2	507.795132	1013.57571	0.21115	0.00010722	-0.66397	-0.00033716	-0.45283	-0.00022994	507.7947280281232	128.58	1.4414	127.13	126.85	128.29	-1.4565					78	28	4	0	0	0	0.28934	1	12329	12329		64.207	5.9773	1	608480	+		31339	20404	25796	25821	34559	34559					0.06946609757471833
LLAEKVLAGK	10	Unmodified	_LLAEKVLAGK_					0	0	0		DLGAP1-GNAS|20|fusion;DLGAP1-GNAS|17|fusion;DLGAP1-GNAS|18|fusion;DLGAP1-GNAS|19|fusion;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;DLGAP1-GNAS|21|fusion;DLGAP1-GNAS|14|fusion;DLGAP1-GNAS|15|fusion;ENSG00000087460|ENST00000371085|GNAS;DLGAP1-GNAS|23|fusion;SETD3-GNAS|1|fusion;SETD3-GNAS|4|fusion;DLGAP1-GNAS|3|fusion;SETD3-GNAS|2|fusion;SETD3-GNAS|3|fusion;nc|ENSG00000087460|P63092-4|GNAS;CADM1-GNAS|4|fusion;DLGAP1-GNAS|24|fusion;DLGAP1-GNAS|11|fusion;DLGAP1-GNAS|2|fusion;nc|ENSG00000087460|P63092-2|GNAS;DLGAP1-GNAS|10|fusion;DLGAP1-GNAS|13|fusion;DLGAP1-GNAS|16|fusion;DLGAP1-GNAS|1|fusion;DLGAP1-GNAS|4|fusion;DLGAP1-GNAS|7|fusion;DLGAP1-GNAS|9|fusion;DLGAP1-GNAS|6|fusion;DLGAP1-GNAS|12|fusion;DLGAP1-GNAS|5|fusion;DLGAP1-GNAS|8|fusion;DLGAP1-GNAS|22|fusion;CADM1-GNAS|1|fusion;SDCCAG8-GNAS|2|fusion;nc|ENSG00000087460|P63092-3|GNAS;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;SDCCAG8-GNAS|4|fusion;SDCCAG8-GNAS|1|fusion;CADM1-GNAS|2|fusion;CADM1-GNAS|3|fusion;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;SDCCAG8-GNAS|3|fusion;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS	DLGAP1-GNAS|20|fusion;nc|ENSG00000087460|Q5JWF2-2|GNAS	DLGAP1-GNAS|20|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	521.3359985351562	2	521.336967	1040.65938	0.35524	0.0001852	-0.68268	-0.00035591	-0.32745	-0.00017071	521.3364284098204	71.542	1.339	68.94	68.331	69.67	-2.6023					76	26	4	0	0	0	0.094891	2	3344	3338;3344		114.89	21.699	1	433840			31340	739;14909	25797	25822	34560;34561	34561					0.14067765925165077
LLAERDLYL	9	Unmodified	_LLAERDLYL_					0	0	0		ENSG00000198959|ENST00000361475|TGM2;ENST00000469269.1_1_20:36758623-36761344:-|nuORF	ENSG00000198959|ENST00000361475|TGM2	ENSG00000198959|ENST00000361475|TGM2	MULTI-MSMS	OvCa99_classI_Rep5	1	553.3192138671875	2	553.316232	1104.61791	-0.18764	-0.00010383	0.43173	0.00023888	0.24409	0.00013506	553.3161945982771	104.88	0.90472	104.88	104.54	105.44	0					65	20	5	0	0	0	0.055627	1	11778	11778		115.49	19.304	1	3101200			31341	8918	25798	25823	34562	34562					0.0697858516582528
LLAESSCSTL	10	Carbamidomethyl (C)	_LLAESSC(Carbamidomethyl (C))STL_	LLAESSC(1)STL		LLAESSC(42)STL		0	1	0			REV__nc|ENSG00000173193|Q460N5-3|PARP14	REV__nc|ENSG00000173193|Q460N5-3|PARP14	MSMS	OvCa9_classI_Rep3	3	540.765380859375	2	540.765714	1079.51688	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.513	1	77.173	76.673	77.673	-2.3399								0	0	0	0.15276	1	4299	4299		42.396	6.7778	1		+		31342	21755	25799	25824	34563	34563	244				-0.01970234599161813
LLAETLLVV	9	Unmodified	_LLAETLLVV_					0	0	0			REV__nc|ENSG00000020219|A6NM43|CCT8L1P	REV__nc|ENSG00000020219|A6NM43|CCT8L1P	MULTI-MSMS	OvCa99_classI_Rep5	1	485.81280517578125	2	485.812793	969.611034	1.4031	0.00068165	0.38188	0.00018552	1.785	0.00086717	485.8128285577155	147.57	4.5874	147.57	147.11	151.7	0					195	92	4	0	0	0	0.32337	1	17631	17631		60.294	0	1	1725900	+		31343	23019	25800	25825	34564	34564					0.12501272285282994
LLAEWRLV	8	Unmodified	_LLAEWRLV_					0	0	0		ENST00000316292.13_1_6:74228237-74228423:-|nuORF	ENST00000316292.13_1_6:74228237-74228423:-|nuORF	ENST00000316292.13_1_6:74228237-74228423:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	500.3059387207031	2	500.302927	998.591301	2.5395	0.0012705	2.6591	0.0013304	5.1986	0.0026009	500.3042015104892	96.421	1.6994	96.421	96.168	97.867	0					108	39	4	0	0	0	0.57878	1	10601	10601		68.485	2.6815	1	25942000			31344	10341	25801	25826	34565	34565					0.09194941065163675
LLAFAAIAAL	10	Unmodified	_LLAFAAIAAL_					0	0	0			REV__tr|A0A553STN6|A0A553STN6_NIACICytochromeubiquinoloxidasesubunitIOS=NialliacirculansOX=1397GN=CEQ21_05325PE=3SV=1	REV__tr|A0A553STN6|A0A553STN6_NIACICytochromeubiquinoloxidasesubunitIOS=NialliacirculansOX=1397GN=CEQ21_05325PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	487.28253173828125	2	487.307678	972.600803	-1.0183	-0.00049622	0.1695	8.2598E-05	-0.84879	-0.00041362	487.30782906485	95.166	0.45062	93.27	93.014	93.465	-1.8956					12	8	2	0	0	0	0.026578	1	6161	6161		54.765	3.4292	1	12889	+		31345	30988	25802	25827	34566	34566					0.11340709350690759
LLAFLQRR	8	Unmodified	_LLAFLQRR_					0	0	0		RXFP4|p.F291Sfs*22|1|0.1|ENSG00000173080|chr1:155942580-155942580|T/-|frameshift_variant;ENSG00000173080|ENST00000368318|RXFP4	RXFP4|p.F291Sfs*22|1|0.1|ENSG00000173080|chr1:155942580-155942580|T/-|frameshift_variant	RXFP4|p.F291Sfs*22|1|0.1|ENSG00000173080|chr1:155942580-155942580|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.80426025390625	2	508.821818	1015.62908	0.040539	2.0627E-05	-2.6523	-0.0013495	-2.6117	-0.0013289	508.81995872117477	60.599	0.298	57.169	56.996	57.294	-3.43					8	5	2	0	0	0	0.028476	1	4124	4124		26.796	1.3459	1	12736			31346	7346	25803	25828	34567	34567					0.12189452050654381
LLAFPFAIIQ	10	Unmodified	_LLAFPFAIIQ_					0	0	0			REV__tr|A0A7D7A3S5|A0A7D7A3S5_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_00905PE=4SV=1	REV__tr|A0A7D7A3S5|A0A7D7A3S5_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_00905PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	566.810302734375	2	566.841885	1131.66922	0.00015744	8.9243E-08	-4.2038	-0.0023829	-4.2037	-0.0023828	566.8393200663592	55.615	1.0109	52.321	52.059	53.07	-3.2944					44	19	3	0	0	0	0.026822	1	3484	3484		47.916	15.103	1	130840	+		31347	32593	25804	25829	34568	34568					0.1086495393055884
LLAFRLILL	9	Unmodified	_LLAFRLILL_					0	0	0			REV__ENST00000461745.5_2_3:77089697-77089820:+|nuORF	REV__ENST00000461745.5_2_3:77089697-77089820:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3305053710938	2	536.36807	1070.72159	-0.0030158	-1.6176E-06	-0.36411	-0.0001953	-0.36713	-0.00019691	536.3677078281295	68.997	0.61606	68.997	68.774	69.39	0					22	14	2	0	0	0	0.027462	1	6566	6566		26.796	0	1	582110	+		31348	26100	25805	25830	34569	34569					0.18905537064188138
LLAFSTATIM	10	Unmodified	_LLAFSTATIM_					0	0	0		ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.31396484375	2	534.293911	1066.57327	1.3812	0.00073798	-0.7571	-0.00040452	0.62412	0.00033346	534.2925121246025	109.86	1.0272	109.86	109.24	110.27	0					43	22	4	0	0	0	0.026822	1	12439	12439		38.806	9.6566	1	267090			31349	8849	25806	25831	34570	34570					0.04264438028144468
LLAGIVVDKP	10	Unmodified	_LLAGIVVDKP_					0	0	0		ENST00000479805.1_1_10:111886198-111892190:+|nuORF;nc|ENSG00000148700|Q9UEY8-2|ADD3;ENSG00000148700|ENST00000356080|ADD3	ENST00000479805.1_1_10:111886198-111892190:+|nuORF	ENST00000479805.1_1_10:111886198-111892190:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	512.8245239257812	2	512.823692	1023.63283	2.6826	0.0013757	-0.9916	-0.00050851	1.691	0.00086721	512.8230217708215	100.92	0.83569	100.92	100.69	101.53	0					45	19	4	0	0	0	0.3976	1	11204	11204		68.787	1.2932	1	1766000			31350	5421	25807	25832	34571	34571					0.12196077033843267
LLAGIVVDKP	10	Unmodified	_LLAGIVVDKP_					0	0	0		ENST00000479805.1_1_10:111886198-111892190:+|nuORF;nc|ENSG00000148700|Q9UEY8-2|ADD3;ENSG00000148700|ENST00000356080|ADD3	ENST00000479805.1_1_10:111886198-111892190:+|nuORF	ENST00000479805.1_1_10:111886198-111892190:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	512.823692	1023.63283	-1.1179	-0.00057331	0.77434	0.0003971	-0.3436	-0.00017621	512.8240007862883	101.78	0.54598	101.01	100.77	101.31	-0.764	0.0017006	0.0015304	NaN	68.787	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15830			31351	5421	25807	25832							0.12196077033843267
LLAGIVVDKP	10	Unmodified	_LLAGIVVDKP_					0	0	0		ENST00000479805.1_1_10:111886198-111892190:+|nuORF;nc|ENSG00000148700|Q9UEY8-2|ADD3;ENSG00000148700|ENST00000356080|ADD3	ENST00000479805.1_1_10:111886198-111892190:+|nuORF	ENST00000479805.1_1_10:111886198-111892190:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	512.823692	1023.63283	-0.20698	-0.00010614	-0.87399	-0.0004482	-1.081	-0.00055434	512.8230624499554	102.62	0.83402	101.1	100.74	101.57	-1.5211	0.086731	-0.00016025	NaN	68.787	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28153			31352	5421	25807	25832							0.12196077033843267
LLAGRLVSFL	10	Unmodified	_LLAGRLVSFL_					0	0	0		ENST00000559530.1_1_15:32058089-32058740:-|nuORF;ENST00000488146.5_1_1:68942617-68947320:-|nuORF;nc|ENSG00000024526|Q5TB30-2|DEPDC1;chr1:68481612-68483950|382|13.57|0.32|5.39|-|ENST00000370966|DEPDC1,DEPDC1;ENSG00000024526|ENST00000456315|DEPDC1;ENST00000421655.1_1_9:108522415-108523033:+|nuORF	ENST00000559530.1_1_15:32058089-32058740:-|nuORF	ENST00000559530.1_1_15:32058089-32058740:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2777099609375	2	544.844959	1087.67537	1.5484	0.00084366	0.54063	0.00029456	2.0891	0.0011382	544.8453262024365	127.47	0.48814	127.47	127.23	127.72	0					19	10	2	0	0	0	0.026734	1	14731	14731		31.53	4.8369	1	229890			31353	266	25808	25833	34572	34572					0.1350347216209684
LLAGVDFVN	9	Unmodified	_LLAGVDFVN_					0	0	0			REV__ENSG00000157827|ENST00000288670|FMNL2	REV__ENSG00000157827|ENST00000288670|FMNL2	MULTI-SECPEP	OvCa9_classI_Rep2	2	473.284912109375	2	474.263468	946.512382	1.5615	0.00074056	0.29899	0.0001418	1.8605	0.00088236	474.26288945582985	87.896	0.39033	86.465	86.335	86.726	-1.4311					11	7	2	0	0	0	0.027462	1	7711	7711		30.504	7.4612	1	11612	+		31354	20535	25809	25834	34573	34573					0.03698669040238656
LLAHAYPTWLP	11	Unmodified	_LLAHAYPTWLP_					0	0	0		ENSG00000158246|ENST00000289166|TENT5B	ENSG00000158246|ENST00000289166|TENT5B	ENSG00000158246|ENST00000289166|TENT5B	MULTI-MSMS	OvCa99_classI_Rep5	1	641.352783203125	2	641.353148	1280.69174	1.2725	0.0008161	-1.5855	-0.0010169	-0.31301	-0.00020075	641.3510532848418	154.34	1.0958	154.34	154.03	155.12	0					31	21	2	0	0	0	0.67814	1	18089	18089		37.159	4.3467	1	228330			31355	5939	25810	25835	34574	34574					0.0626255332817891
LLAHDKVAEQ	10	Unmodified	_LLAHDKVAEQ_					0	0	0		ENSG00000072415|ENST00000261681|PALS1;nc|ENSG00000072415|Q8N3R9-2|PALS1	ENSG00000072415|ENST00000261681|PALS1	ENSG00000072415|ENST00000261681|PALS1	MULTI-MSMS	OvCa99_classI_Rep5	1	562.8107299804688	2	562.308938	1122.60332	2.1988	0.0012364	-0.96815	-0.0005444	1.2307	0.00069201	562.310393803367	111.06	0.97951	111.06	110.63	111.6	0					51	21	3	0	0	0	0.28422	1	12618	12618		82.75	5.4329	1	1146800			31356	1472	25811	25836	34575	34575					0.04692513017721467
LLAHDPDFT	9	Unmodified	_LLAHDPDFT_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.312255859375	2	514.756007	1027.49746	-3.0689	-0.0015798	-1.4856	-0.00076474	-4.5546	-0.0023445	514.7554450852182	146.2	0.99329	145.24	145	145.99	-0.95947					30	19	2	0	0	0	0.027462	1	12241	12241		26.796	5.0938	1	46438			31357	3504	25812	25837	34576	34576					-0.01518822827756594
LLAHNLPL	8	Unmodified	_LLAHNLPL_					0	0	0			REV__nc|ENSG00000082175|P06401-2|PGR	REV__nc|ENSG00000082175|P06401-2|PGR	MULTI-MSMS	OvCa99_classI_Rep5	1	445.7781982421875	2	445.776545	889.538538	2.8614	0.0012755	-0.4429	-0.00019744	2.4185	0.0010781	445.77621830132375	95.352	1.2213	95.352	95.075	96.296	0					63	28	3	0	0	0	0.52992	1	10394	10394		74.517	8.6191	1	5581100	+		31358	17082	25813	25838	34577	34577					0.089349830023707
LLAHRKKP	8	Unmodified	_LLAHRKKP_					0	0	0			REV__tr|A0A553SH48|A0A553SH48_NIACIInorganicphosphatetransporterOS=NialliacirculansOX=1397GN=CEQ21_12110PE=4SV=1	REV__tr|A0A553SH48|A0A553SH48_NIACIInorganicphosphatetransporterOS=NialliacirculansOX=1397GN=CEQ21_12110PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	481.8173828125	2	481.816536	961.618519	0.63652	0.00030669	-4.3932	-0.0021167	-3.7567	-0.0018101	481.81479588639235	160.92	2.1046	160.92	159.66	161.77	0					71	41	3	0	0	0	0.73288	1	18879	18879		35.201	6.9464	1	146960	+		31359	29774	25814	25839	34578	34578					0.1361746939621753
LLAHYLSGLL	10	Unmodified	_LLAHYLSGLL_					0	0	0			REV__ENST00000334348.7_2_7:76142451-76144565:+|nuORF	REV__ENST00000334348.7_2_7:76142451-76144565:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	550.327392578125	2	550.329142	1098.64373	-1.5659	-0.00086175	-2.871	-0.00158	-4.4368	-0.0024417	550.3275336090328	86.284	1.4089	84.064	83.686	85.095	-2.2204					106	27	5	0	0	0	0.47435	1	5155	5155		57.811	4.4598	1	3899600	+		31360	24563	25815	25840	34579	34579					0.09835479408138781
LLAIEGPSL	9	Unmodified	_LLAIEGPSL_					0	0	0			REV__ENST00000592800.5_2_17:66526404-66526587:+|nuORF	REV__ENST00000592800.5_2_17:66526404-66526587:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	456.7721252441406	2	456.773668	911.532783	-0.55209	-0.00025218	-2.5379	-0.0011592	-3.09	-0.0014114	456.77237766888294	142.31	1.8774	142.08	141.37	143.25	-0.22697					97	37	4	0	0	0	0.64339	1	14231	14231		26.796	3.7536	1	225920	+		31361	27954	25816	25841	34580	34580					0.07347839700048553
LLAIHILET	9	Unmodified	_LLAIHILET_					0	0	0			REV__ENSG00000164494|ENST00000369037|PDSS2	REV__ENSG00000164494|ENST00000369037|PDSS2	MULTI-SECPEP	OvCa9_classI_Rep3	3	511.2884216308594	2	511.815867	1021.61718	-0.70217	-0.00035938	-2.9373	-0.0015033	-3.6394	-0.0018627	511.81545318233333	95.879	0.34113	94.051	93.93	94.271	-1.8286					11	6	2	0	0	0	0.027462	1	6263	6263		19.36	0	1	23123	+		31362	20992	25817	25842	34581	34581					0.10723790516806275
LLAIHRIFT	9	Unmodified	_LLAIHRIFT_					0	0	0			REV__ENST00000432102.5_1_7:72634680-72637990:+|nuORF	REV__ENST00000432102.5_1_7:72634680-72637990:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.2886962890625	2	542.337301	1082.66005	-0.23527	-0.0001276	-3.1976	-0.0017342	-3.4328	-0.0018618	542.3355860071001	71.287	0.75302	71.287	70.954	71.707	0					25	18	2	0	0	0	0.027462	1	6937	6937		45.952	20.378	1	1571600	+		31363	20569	25818	25843	34582	34582					0.12202605364905139
LLAKCSTYLR	10	Unmodified	_LLAKCSTYLR_					0	0	0			REV__ENST00000561566.1_1_16:68894085-68896991:+|nuORF	REV__ENST00000561566.1_1_16:68894085-68896991:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	584.3171997070312	2	584.331359	1166.64816	0.094193	5.504E-05	2.7973	0.0016345	2.8914	0.0016896	584.3328611652822	34.058	1.538	31.269	30.209	31.747	-2.7881					53	30	3	0	0	0	0.027056	1	1027	1027		35.618	0	1	68432	+		31364	17593	25819	25844	34583	34583					0.07150620559377785
LLALAQDFGY	10	Unmodified	_LLALAQDFGY_					0	0	0			REV__nc|ENSG00000020129|Q9UBB6-2|NCDN	REV__nc|ENSG00000020129|Q9UBB6-2|NCDN	MULTI-SECPEP	OvCa9_classI_Rep3	3	556.7944946289062	2	555.795132	1109.57571	-0.74089	-0.00041178	0.019188	1.0665E-05	-0.7217	-0.00040112	555.7950493162163	115.27	1.0363	114.22	113.95	114.98	-1.055					35	20	2	0	0	0	0.026871	1	8522	8522		29.15	19.444	1	169210	+		31365	16538	25820	25845	34584	34584					0.0253060975749122
LLALAQDFGY	10	Unmodified	_LLALAQDFGY_					0	0	0			REV__nc|ENSG00000020129|Q9UBB6-2|NCDN	REV__nc|ENSG00000020129|Q9UBB6-2|NCDN	MULTI-MATCH	OvCa99_classI_Rep5	1		2	555.795132	1109.57571	1.316	0.00073143	1.4062	0.00078158	2.7222	0.001513	556.2976710180907	114.01	0.36359	114.01	113.83	114.2	0	-0.16852	0.0021154	NaN	29.15	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120610	+		31366	16538	25820	25845							0.0253060975749122
LLALAQDFGY	10	Unmodified	_LLALAQDFGY_					0	0	0			REV__nc|ENSG00000020129|Q9UBB6-2|NCDN	REV__nc|ENSG00000020129|Q9UBB6-2|NCDN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	555.795132	1109.57571	0.58222	0.0003236	-0.64384	-0.00035784	-0.06162	-3.4248E-05	555.7945757910666	114.45	1.2832	114.33	114.11	115.39	-0.11777	0.14915	-0.00016341	NaN	29.15	41	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153090	+		31367	16538	25820	25845							0.0253060975749122
LLALDKRPPT	10	Unmodified	_LLALDKRPPT_					0	0	0			REV__nc|ENSG00000170289|Q9NQW8-2|CNGB3	REV__nc|ENSG00000170289|Q9NQW8-2|CNGB3	MULTI-MSMS	OvCa9_classI_Rep2	2	562.3428344726562	2	562.345323	1122.67609	-1.142	-0.00064221	-2.621	-0.0014739	-3.7631	-0.0021161	562.3438081477608	141.84	4.7959	141.62	140.24	145.03	-0.22697					133	96	2	0	0	0	0.7759	1	14345	14345		21.96	3.6355	1	113870	+		31368	21529	25821	25846	34585	34585					0.11966266811123205
LLALGWHTFC	10	Unmodified	_LLALGWHTFC_					0	0	0			REV__SLC23A3|p.S254Qfs*15|1|0.31|ENSG00000213901|chr2:219168234-219168234|T/-|frameshift_variant	REV__SLC23A3|p.S254Qfs*15|1|0.31|ENSG00000213901|chr2:219168234-219168234|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	580.3198852539062	2	580.799694	1159.58484	-1.0694	-0.00062108	-1.2761	-0.00074117	-2.3455	-0.0013623	580.7989409816032	48.193	0.59744	45.484	45.182	45.779	-2.7097					15	11	2	0	0	0	0.026939	1	2964	2964		31.955	17.818	1	13355	+		31369	23274	25822	25847	34586	34586					0.01142679842155303
LLALHKRII	9	Unmodified	_LLALHKRII_					0	0	0			REV__tr|A0A553SF72|A0A553SF72_NIACIDUF616domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_08145PE=4SV=1	REV__tr|A0A553SF72|A0A553SF72_NIACIDUF616domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_08145PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.8267822265625	2	538.868769	1075.72298	-0.55345	-0.00029824	-3.915	-0.0021097	-4.4684	-0.0024079	538.8667387479528	93.016	0.14767	91.054	90.981	91.128	-1.9617					4	2	2	0	0	0	0.027449	1	5926	5926		31.955	0	1	5876.9	+		31370	29540	25823	25848	34587	34587					0.18815171152937182
LLALKKPE	8	Unmodified	_LLALKKPE_					0	0	0		ENSG00000145703|ENST00000274364|IQGAP2	ENSG00000145703|ENST00000274364|IQGAP2	ENSG00000145703|ENST00000274364|IQGAP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.3011779785156	2	456.299853	910.585153	-1.1569	-0.00052792	1.017	0.00046406	-0.13993	-6.3852E-05	456.30018280273066	88.663	1.4396	86.06	85.781	87.221	-2.6027					66	28	4	0	0	0	0.61436	1	7586	7586		60.972	6.2073	1	484470			31371	5238	25824	25849	34588	34588					0.1262842283365444
LLALKSTFP	9	Unmodified	_LLALKSTFP_					0	0	0			REV__nc|ENSG00000088298|Q9BV94-2|EDEM2	REV__nc|ENSG00000088298|Q9BV94-2|EDEM2	MULTI-SECPEP	OvCa9_classI_Rep3	3	495.28509521484375	2	495.305136	988.595718	-0.013788	-6.8291E-06	-0.76657	-0.00037969	-0.78036	-0.00038652	495.30459648710854	107.87	1.8169	106.67	106.32	108.14	-1.1978					62	34	3	0	0	0	0.027462	1	7674	7674		54.776	12.38	1	83454	+		31372	17175	25825	25850	34589	34589					0.10096405488081928
LLALLHGSL	9	Unmodified	_LLALLHGSL_					0	0	0		ENSG00000160796|ENST00000450053|NBEAL2;nc|ENSG00000160796|Q6ZNJ1-3|NBEAL2	ENSG00000160796|ENST00000450053|NBEAL2	ENSG00000160796|ENST00000450053|NBEAL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	469.254638671875	2	468.797478	935.580402	1.5975	0.0007489	-2.2942	-0.0010755	-0.6967	-0.00032661	468.7962794512052	86.268	1.2856	83.622	83.344	84.629	-2.6463					45	25	3	0	0	0	0.027433	1	7369	7369		47.916	0	1	129360			31373	6092	25826	25851	34590	34590					0.11003538690886217
LLALLPLVCCQ	11	Carbamidomethyl (C)	_LLALLPLVC(Carbamidomethyl (C))CQ_	LLALLPLVC(0.5)C(0.5)Q		LLALLPLVC(0)C(0)Q		0	1	0			REV__ENST00000379561.5_1_13:41240138-41240633:-|nuORF	REV__ENST00000379561.5_1_13:41240138-41240633:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	621.8513793945312	2	621.85107	1241.68759	1.1955	0.00074343	-1.2402	-0.00077122	-0.044682	-2.7786E-05	621.8502830657769	71.677	2.3262	69.075	68.633	70.959	-2.6023					129	46	4	0	0	0	0.43234	1	3363	3363		58.782	9.3404	2	908440	+		31374	25159	25827	25852	34591	34591	308;309				0.07641004518609407
LLALLPLVCCQ	11	Carbamidomethyl (C)	_LLALLPLVC(Carbamidomethyl (C))CQ_					0	1	0			REV__ENST00000379561.5_1_13:41240138-41240633:-|nuORF	REV__ENST00000379561.5_1_13:41240138-41240633:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	621.85107	1241.68759	-0.32172	-0.00020006	6.6709	0.0041483	6.3491	0.0039482	621.8554321043548	68.922	0.45728	68.922	68.649	69.106	0	-0.13274	0.0088951	NaN	58.782	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144710	+		31375	25159	25827	25852			308;309				0.07641004518609407
LLALLRPAL	9	Unmodified	_LLALLRPAL_					0	0	0		ENSG00000033100|ENST00000035307|CHPF2;nc|ENSG00000033100|Q9P2E5-2|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	MULTI-MSMS	OvCa9_classI_Rep2	2	490.33538818359375	2	490.33677	978.658987	0.31976	0.00015679	-1.1553	-0.00056648	-0.83553	-0.00040969	490.3362879264998	135.18	3.9777	134.96	134.64	138.62	-0.22697					225	81	5	0	0	0	0.30002	4	13540	13386;13540;13595;13607		62.978	5.1671	1	7114000			31376	1074	25828	25853	34592;34593;34594;34595	34593					0.16880390995981998
LLALLRPAL	9	Unmodified	_LLALLRPAL_					0	0	0		ENSG00000033100|ENST00000035307|CHPF2;nc|ENSG00000033100|Q9P2E5-2|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	MULTI-MSMS	OvCa9_classI_Rep3	3	490.3367614746094	2	490.33677	978.658987	-1.5535	-0.00076172	0.74111	0.00036339	-0.81236	-0.00039833	490.33716888209767	136.71	4.5569	135.62	135.22	139.77	-1.0858					270	92	5	0	0	0	0.50066	1	11341	11341		42.474	8.9589	1	5555400			31377	1074	25828	25853	34596	34596					0.16880390995981998
LLALLRPAL	9	Unmodified	_LLALLRPAL_					0	0	0		ENSG00000033100|ENST00000035307|CHPF2;nc|ENSG00000033100|Q9P2E5-2|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.33587646484375	2	490.33677	978.658987	2.3125	0.0011339	-3.376	-0.0016554	-1.0635	-0.00052147	490.335203673426	137.13	5.8682	135.59	135.18	141.05	-1.5437					314	118	5	0	0	0	0.22913	2	13383	13383;13408		71.378	5.5747	1	8417000			31378	1074	25828	25853	34597;34598	34597					0.16880390995981998
LLALRDGSL	9	Unmodified	_LLALRDGSL_					0	0	0			REV__ENST00000372092.3_1_10:86004898-86010349:+|nuORF	REV__ENST00000372092.3_1_10:86004898-86010349:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.77264404296875	2	479.290017	956.565481	2.2782	0.0010919	1.8627	0.00089277	4.1409	0.0019847	479.29111583109085	90.581	0.34639	90.581	90.31	90.656	0					13	8	2	0	0	0	0.027447	1	9707	9707		56.721	0	1	386980	+		31379	24997	25829	25854	34599	34599					0.0854604682289164
LLALRVDI	8	Unmodified	_LLALRVDI_					0	0	0			REV__tr|A0A7D6VMQ7|A0A7D6VMQ7_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12725PE=4SV=1	REV__tr|A0A7D6VMQ7|A0A7D6VMQ7_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12725PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	456.7982482910156	2	456.797478	911.580402	0.40268	0.00018394	-0.77327	-0.00035323	-0.37058	-0.00016928	456.7970629432732	104.69	4.1681	103.25	102.81	106.98	-1.4342					186	80	4	0	0	0	0.39692	1	7368	7368		88.643	3.2834	1	1565700	+		31380	31144	25830	25855	34600	34600					0.12107538690884212
LLALRVDI	8	Unmodified	_LLALRVDI_					0	0	0			REV__tr|A0A7D6VMQ7|A0A7D6VMQ7_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12725PE=4SV=1	REV__tr|A0A7D6VMQ7|A0A7D6VMQ7_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12725PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.79852294921875	2	456.797478	911.580402	-0.19337	-8.8331E-05	-0.21738	-9.9301E-05	-0.41075	-0.00018763	456.7973138081142	105.4	4.1348	103.39	102.95	107.09	-2.0161					221	81	4	0	0	0	0.39692	1	9633	9633		88.643	0	1	1556700	+		31381	31144	25830	25855	34601	34601					0.12107538690884212
LLALRYRLRYR	11	Unmodified	_LLALRYRLRYR_					0	0	0			REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF	REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.310791015625	3	498.312288	1491.91504	-5.113	-0.0025478	0.297	0.000148	-4.816	-0.0023998	498.3123780141879	160.35	1.8473	160.12	159.68	161.53	-0.22697					120	37	4	0	0	0	0.7257	3	16402	16316;16402;16407		6.3209	0.31984	1	150420	+		31382	27958	25831	25856	34602;34603;34604	34603					0.18875466833105747
LLALRYRLRYR	11	Unmodified	_LLALRYRLRYR_					0	0	0			REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF	REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3081359863281	3	498.312288	1491.91504	-6.1524	-0.0030658	1.7848	0.00088941	-4.3676	-0.0021764	498.3133054732335	158.89	2.5083	157.31	156.27	158.78	-1.5859					162	69	3	0	0	0	0.7257	1	15666	15666		6.3209	2.9122	1	46050	+		31383	27958	25831	25856	34605	34605					0.18875466833105747
LLALRYRLRYR	11	Unmodified	_LLALRYRLRYR_					0	0	0			REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF	REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3096618652344	3	498.312288	1491.91504	-6.6762	-0.0033268	2.0273	0.0010102	-4.6489	-0.0023166	498.3133001501435	161.41	1.8887	159.79	158.52	160.4	-1.6239					107	42	4	0	0	0	0.72516	1	15974	15974		13.508	10.099	1	100850	+		31384	27958	25831	25856	34606	34606					0.18875466833105747
LLALSFIGAGP	11	Unmodified	_LLALSFIGAGP_					0	0	0			REV__tr|A0A553SNB1|A0A553SNB1_NIACIPTS2-O-a-mannosyl-D-glyceratetransportersubunitIIABCOS=NialliacirculansOX=1397GN=CEQ21_24110PE=4SV=1	REV__tr|A0A553SNB1|A0A553SNB1_NIACIPTS2-O-a-mannosyl-D-glyceratetransportersubunitIIABCOS=NialliacirculansOX=1397GN=CEQ21_24110PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.7874145507812	2	529.815867	1057.61718	1.9352	0.0010253	-3.5423	-0.0018768	-1.6072	-0.00085149	529.8139422223163	85.323	0.58018	85.323	85.004	85.585	0					30	13	3	0	0	0	0.025516	1	8963	8963		51.335	0	1	773550	+		31385	30405	25832	25857	34607	34607					0.09067790516814966
LLALSFIGAGP	11	Unmodified	_LLALSFIGAGP_					0	0	0			REV__tr|A0A553SNB1|A0A553SNB1_NIACIPTS2-O-a-mannosyl-D-glyceratetransportersubunitIIABCOS=NialliacirculansOX=1397GN=CEQ21_24110PE=4SV=1	REV__tr|A0A553SNB1|A0A553SNB1_NIACIPTS2-O-a-mannosyl-D-glyceratetransportersubunitIIABCOS=NialliacirculansOX=1397GN=CEQ21_24110PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	529.815867	1057.61718	0.11287	5.9798E-05	-1.041	-0.00055152	-0.92811	-0.00049173	530.3162449361615	87.123	0.50193	85.692	85.438	85.94	-1.4311	0.15193	0.0016379	NaN	51.335	16	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10656	+		31386	30405	25832	25857							0.09067790516814966
LLALSFIGAGP	11	Unmodified	_LLALSFIGAGP_					0	0	0			REV__tr|A0A553SNB1|A0A553SNB1_NIACIPTS2-O-a-mannosyl-D-glyceratetransportersubunitIIABCOS=NialliacirculansOX=1397GN=CEQ21_24110PE=4SV=1	REV__tr|A0A553SNB1|A0A553SNB1_NIACIPTS2-O-a-mannosyl-D-glyceratetransportersubunitIIABCOS=NialliacirculansOX=1397GN=CEQ21_24110PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	529.815867	1057.61718	-0.73267	-0.00038818	1.4219	0.00075335	0.68924	0.00036517	529.8172342470607	87.782	0.56718	85.605	85.447	86.015	-2.1768	0.065002	0.0042477	NaN	51.335	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15308	+		31387	30405	25832	25857							0.09067790516814966
LLALSPHLLF	10	Unmodified	_LLALSPHLLF_					0	0	0		ENST00000344651.4_1_12:121159601-121159766:+|nuORF	ENST00000344651.4_1_12:121159601-121159766:+|nuORF	ENST00000344651.4_1_12:121159601-121159766:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	562.3416748046875	2	562.347335	1122.68012	-2.9015	-0.0016316	-4.2839	-0.002409	-7.1854	-0.0040407	562.3448419475409	142.33	4.504	141.32	140	144.5	-1.0106					205	90	3	0	0	0	0.68695	1	11925	11925		31.955	5.1588	1	106680			31388	10613	25833	25858	34608	34608					0.12368356304841654
LLALSWRLFF	10	Unmodified	_LLALSWRLFF_					0	0	0			REV__chr3:128622409-128624714|115|61.39|0.19|8.35|-|0|TE_info:AluSc,AluSc_dup6791,Alu,SINE,donor,+,128624714,128624845|RPN1,None|1	REV__chr3:128622409-128624714|115|61.39|0.19|8.35|-|0|TE_info:AluSc,AluSc_dup6791,Alu,SINE,donor,+,128624714,128624845|RPN1,None|1	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3692626953125	2	633.373884	1264.73321	-4.8823	-0.0030923	-2.3632	-0.0014968	-7.2455	-0.0045891	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.76627	1	13341	13341		23.042	3.939	1	765700	+		31389	16036	25834	25859	34609	34609					0.11143734087499979
LLALTPVLSVQ	11	Unmodified	_LLALTPVLSVQ_					0	0	0			REV__ENST00000474436.1_1_9:35092969-35093197:-|nuORF	REV__ENST00000474436.1_1_9:35092969-35093197:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.8255615234375	2	577.363182	1152.71181	0.97645	0.00056377	0.92814	0.00053587	1.9046	0.0010996	577.3635530605428	98.329	0.56199	98.329	98.121	98.683	0					26	12	3	0	0	0	0.025457	1	10801	10801		22.58	10.373	1	361510	+		31390	21076	25835	25860	34610	34610					0.141563042681355
LLALVLAPR	9	Unmodified	_LLALVLAPR_					0	0	0		ENSG00000049449|ENST00000054950|RCN1	ENSG00000049449|ENST00000054950|RCN1	ENSG00000049449|ENST00000054950|RCN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.3083801269531	2	483.328945	964.643337	3.4448	0.001665	-3.6217	-0.0017505	-0.17691	-8.5504E-05	483.3271125671489	131.16	0.74756	129.68	129.4	130.14	-1.4779					24	15	2	0	0	0	0.027462	1	12617	12617		12.207	0	1	20340			31391	1169	25836	25861	34611	34611					0.1596010447893832
LLALVLAPR	9	Unmodified	_LLALVLAPR_					0	0	0		ENSG00000049449|ENST00000054950|RCN1	ENSG00000049449|ENST00000054950|RCN1	ENSG00000049449|ENST00000054950|RCN1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	483.328945	964.643337	0.14556	7.0353E-05	-0.16996	-8.2146E-05	-0.0244	-1.1793E-05	483.3288699314306	130.85	0.64346	129.72	129.41	130.06	-1.1249	0.02184	0.0017078	NaN	12.207	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19000			31392	1169	25836	25861							0.1596010447893832
LLALVVFVGK	10	Unmodified	_LLALVVFVGK_					0	0	0		nc|ENSG00000126251|O15529|GPR42;ENSG00000185897|ENST00000327809|FFAR3;ENSG00000126251|ENST00000454971|GPR42	nc|ENSG00000126251|O15529|GPR42	nc|ENSG00000126251|O15529|GPR42	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.814208984375	2	529.852253	1057.68995	-0.42536	-0.00022538	0.19393	0.00010275	-0.23143	-0.00012263	529.8526544768536	39.129	0.22445	39.129	39.017	39.242	0					5	4	2	0	0	0	0.027228	1	2290	2290		16.473	3.514	1	28373			31393	3775	25837	25862	34612	34612					0.16341544310216705
LLALYYIF	8	Unmodified	_LLALYYIF_					0	0	0		ENST00000427755.2_1_11:33037501-33047701:+|nuORF	ENST00000427755.2_1_11:33037501-33047701:+|nuORF	ENST00000427755.2_1_11:33037501-33047701:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3225402832031	2	508.296779	1014.57901	-0.28729	-0.00014603	3.1346	0.0015933	2.8473	0.0014473	508.2982526824073	49.01	0.78734	49.01	48.63	49.418	0					32	17	4	0	0	0	0.028476	1	3583	3583		16.705	9.5116	1	1835400			31394	11763	25838	25863	34613	34613					0.07229904602127135
LLAMMSRT	8	Unmodified	_LLAMMSRT_					0	0	0			REV__nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	REV__nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	MULTI-MSMS	OvCa9_classI_Rep3	3	461.7449645996094	2	461.746073	921.477594	-0.83418	-0.00038518	-1.8213	-0.00084099	-2.6555	-0.0012262	461.74511648930593	116.8	1.6831	115.76	115.49	117.17	-1.0414					73	33	4	0	0	0	0.69415	1	8738	8738		44.531	0	1	334790	+		31395	18436	25839	25864	34614	34614					0.013713866362763838
LLANCLPLLI	10	Unmodified	_LLANCLPLLI_					0	0	0			REV__L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|246|2|anti-sense	REV__L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|246|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	542.81640625	2	541.835746	1081.65694	1.1064	0.00059948	2.0849	0.0011297	3.1912	0.0017291	541.836874203577	68.753	0.80042	65.939	65.712	66.512	-2.8144					25	15	2	0	0	0	0.026915	1	3027	3027		27.882	13.745	1	63381	+		31396	28570	25840	25865	34615	34615					0.11937594195887868
LLANCLPLLI	10	Unmodified	_LLANCLPLLI_					0	0	0			REV__L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|246|2|anti-sense	REV__L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|246|2|anti-sense	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	541.835746	1081.65694	-1.4013	-0.00075928	4.4894	0.0024325	3.0881	0.0016732	541.8379475026647	69.626	0.67847	66.145	65.91	66.589	-3.4812	0.10311	0.0019602	NaN	27.882	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38812	+		31397	28570	25840	25865							0.11937594195887868
LLANSSIELV	10	Unmodified	_LLANSSIELV_					0	0	0		tr|A0A553SI51|A0A553SI51_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14195PE=4SV=1	tr|A0A553SI51|A0A553SI51_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14195PE=4SV=1	tr|A0A553SI51|A0A553SI51_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14195PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	529.8087768554688	2	529.808239	1057.60193	-0.30944	-0.00016395	0.15977	8.4646E-05	-0.14968	-7.93E-05	529.8082658364003	80.403	1.7105	78.708	78.37	80.08	-1.6951					93	32	4	0	0	0	0.35697	2	6790	6785;6790		73.975	13.571	1	1665600			31398	33344	25841	25866	34616;34617	34617					0.0754287892893899
LLAPKRRLLLA	11	Unmodified	_LLAPKRRLLLA_					0	0	0			REV__tr|A0A553SGB4|A0A553SGB4_NIACIMembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_10565PE=4SV=1	REV__tr|A0A553SGB4|A0A553SGB4_NIACIMembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_10565PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	632.4315795898438	2	632.434807	1262.85506	-6.3094	-0.0039903	-0.6092	-0.00038528	-6.9186	-0.0043755	632.4340739363838	164.76	0.82013	163.12	162.87	163.69	-1.6405					53	29	3	0	0	0	0.72567	1	16249	16249		6.7355	3.5763	1	114650	+		31399	29681	25842	25867	34618	34618					0.23414776169897777
LLAPPLDFLLT	11	Unmodified	_LLAPPLDFLLT_					0	0	0			REV__nc|ENSG00000090376|Q9Y616-2|IRAK3	REV__nc|ENSG00000090376|Q9Y616-2|IRAK3	MULTI-MSMS	OvCa9_classI_Rep3	3	404.9114685058594	3	404.912797	1211.71656	2.0403	0.00082616	-4.1556	-0.0016827	-2.1153	-0.0008565	404.9110205708817	66.24	1.1195	63.294	62.857	63.976	-2.9459					44	21	3	0	0	0	0.69424	2	2703	2703;2708		31.634	7.1151	1	49827	+		31400	17221	25843	25868	34619;34620	34619					0.11917188410893687
LLAPPLDFLLT	11	Unmodified	_LLAPPLDFLLT_					0	0	0			REV__nc|ENSG00000090376|Q9Y616-2|IRAK3	REV__nc|ENSG00000090376|Q9Y616-2|IRAK3	MULTI-MATCH	OvCa9_classI_Rep2	2		3	404.912797	1211.71656	2.5573	0.0010355	-4.9182	-0.0019914	-2.3609	-0.00095596	404.9107624625598	65.691	0.94536	62.995	62.771	63.716	-2.6958	-0.24998	-0.00073351	NaN	31.634	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28626	+		31401	17221	25843	25868							0.11917188410893687
LLAPPLDFLLT	11	Unmodified	_LLAPPLDFLLT_					0	0	0			REV__nc|ENSG00000090376|Q9Y616-2|IRAK3	REV__nc|ENSG00000090376|Q9Y616-2|IRAK3	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	404.912797	1211.71656	1.9135	0.00077482	-4.2169	-0.0017075	-2.3034	-0.00093266	405.2454178779829	66.937	0.83913	63.446	63.099	63.938	-3.4902	0.20097	0.00011836	NaN	31.634	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27389	+		31402	17221	25843	25868							0.11917188410893687
LLAPVVKEI	9	Unmodified	_LLAPVVKEI_					0	0	0		ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENST00000512383.1_1_5:75964652-75969784:+|nuORF	ENSG00000145703|ENST00000274364|IQGAP2;ENST00000512383.1_1_5:75964652-75969784:+|nuORF	ENSG00000145703|ENST00000274364|IQGAP2	MULTI-MSMS	OvCa99_classI_Rep5	1	491.3213195800781	2	491.320786	980.627018	2.8263	0.0013886	-0.67851	-0.00033337	2.1478	0.0010552	491.32034609284017	97.331	1.0285	97.331	97.093	98.121	0					58	23	4	0	0	0	0.030815	2	10696	10676;10696		134.81	0	1	6184400			31403	5238;12995	25844	25869	34621;34622	34622					0.1359297852217196
LLAPYHGCL	9	Unmodified	_LLAPYHGCL_					0	0	0			REV__ENST00000542192.5_1_9:136333966-136334071:+|nuORF	REV__ENST00000542192.5_1_9:136333966-136334071:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.7608642578125	2	493.760038	985.505523	3.5833	0.0017693	-1.6761	-0.00082761	1.9071	0.00094167	493.7590664833101	133.64	1.4269	132.12	131.8	133.23	-1.5257					73	28	4	0	0	0	0.61768	1	12906	12906		29.842	0	1	430880	+		31404	27381	25845	25870	34623	34623					0.012190328880137713
LLAPYHLPRC	10	Unmodified	_LLAPYHLPRC_					0	0	0			REV__ENSG00000176922|ENST00000322101|OR51S1	REV__ENSG00000176922|ENST00000322101|OR51S1	MULTI-SECPEP	OvCa99_classI_Rep5	1	590.8604125976562	2	591.826243	1181.63793	1.8457	0.0010924	1.2936	0.00076558	3.1393	0.0018579	591.8270340414269	87.609	0.37565	87.609	87.378	87.754	0					14	8	2	0	0	0	0.026982	1	9265	9265		30.504	6.3009	1	238830	+		31405	21976	25846	25871	34624	34624					0.05438057624814974
LLAPYHLPRC	10	Unmodified	_LLAPYHLPRC_					0	0	0			REV__ENSG00000176922|ENST00000322101|OR51S1	REV__ENSG00000176922|ENST00000322101|OR51S1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	591.826243	1181.63793	1.2917	0.00076444	0.16384	9.6962E-05	1.4555	0.0008614	591.826015467994	88.83	0.592	87.463	87.231	87.823	-1.3676	-0.051121	-0.001704	NaN	30.504	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14029	+		31406	21976	25846	25871							0.05438057624814974
LLAPYHLPRC	10	Unmodified	_LLAPYHLPRC_					0	0	0			REV__ENSG00000176922|ENST00000322101|OR51S1	REV__ENSG00000176922|ENST00000322101|OR51S1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	591.826243	1181.63793	-1.0015	-0.00059272	2.0734	0.0012271	1.0719	0.00063435	591.8274332459447	89.55	0.51263	87.47	87.337	87.85	-2.0805	-0.044197	0.00055616	NaN	30.504	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26114	+		31407	21976	25846	25871							0.05438057624814974
LLAQAQNFTL	10	Unmodified	_LLAQAQNFTL_					0	0	0		nc|ENSG00000099957|O15547-2|P2RX6;ENSG00000099957|ENST00000413302|P2RX6	nc|ENSG00000099957|O15547-2|P2RX6	nc|ENSG00000099957|O15547-2|P2RX6	MULTI-MSMS	OvCa9_classI_Rep2	2	559.8148193359375	2	559.813856	1117.61316	0.75444	0.00042235	2.6115	0.0014619	3.3659	0.0018843	559.8149429329505	132.97	1.1835	132.74	132.38	133.56	-0.22696					73	23	4	0	0	0	0.59317	1	13153	13153		42.864	2.2917	1	163000			31408	1988	25847	25872	34625	34625					0.05905701023084475
LLAQGKIVKI	10	Unmodified	_LLAQGKIVKI_					0	0	0		PDGFRA|p.R940Vfs*16|1|0.06|ENSG00000134853|chr4:54289051-54289052|-/GTGGATTCTACTTTCTACAATA|frameshift_variant;ENSG00000134853|ENST00000257290|PDGFRA	PDGFRA|p.R940Vfs*16|1|0.06|ENSG00000134853|chr4:54289051-54289052|-/GTGGATTCTACTTTCTACAATA|frameshift_variant	PDGFRA|p.R940Vfs*16|1|0.06|ENSG00000134853|chr4:54289051-54289052|-/GTGGATTCTACTTTCTACAATA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	542.81640625	2	541.868434	1081.72232	1.1045	0.0005985	-1.0238	-0.00055476	0.080707	4.3732E-05	541.8677233030853	68.753	0.85022	65.939	65.712	66.562	-2.8144					21	16	2	0	0	0	0.027021	1	3027	3027		29.15	2.4566	1	38922			31409	4339	25848	25873	34626	34626					0.18472331713223866
LLAQGKIVKI	10	Unmodified	_LLAQGKIVKI_					0	0	0		PDGFRA|p.R940Vfs*16|1|0.06|ENSG00000134853|chr4:54289051-54289052|-/GTGGATTCTACTTTCTACAATA|frameshift_variant;ENSG00000134853|ENST00000257290|PDGFRA	PDGFRA|p.R940Vfs*16|1|0.06|ENSG00000134853|chr4:54289051-54289052|-/GTGGATTCTACTTTCTACAATA|frameshift_variant	PDGFRA|p.R940Vfs*16|1|0.06|ENSG00000134853|chr4:54289051-54289052|-/GTGGATTCTACTTTCTACAATA|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	541.868434	1081.72232	-1.5688	-0.00085011	1.5789	0.00085553	0.010016	5.4275E-06	541.8691343185042	68.519	1.0939	65.898	65.671	66.765	-2.6203	-0.076184	0.00091651	NaN	29.15	44	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94806			31410	4339	25848	25873							0.18472331713223866
LLAQGKIVKI	10	Unmodified	_LLAQGKIVKI_					0	0	0		PDGFRA|p.R940Vfs*16|1|0.06|ENSG00000134853|chr4:54289051-54289052|-/GTGGATTCTACTTTCTACAATA|frameshift_variant;ENSG00000134853|ENST00000257290|PDGFRA	PDGFRA|p.R940Vfs*16|1|0.06|ENSG00000134853|chr4:54289051-54289052|-/GTGGATTCTACTTTCTACAATA|frameshift_variant	PDGFRA|p.R940Vfs*16|1|0.06|ENSG00000134853|chr4:54289051-54289052|-/GTGGATTCTACTTTCTACAATA|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	541.868434	1081.72232	-1.3864	-0.00075123	1.1759	0.0006372	-0.21043	-0.00011403	541.8689027440963	69.568	0.92612	66.086	65.762	66.688	-3.4812	0.11192	0.00047985	NaN	29.15	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118960			31411	4339	25848	25873							0.18472331713223866
LLARDSCSM	9	Unmodified	_LLARDSCSM_					0	0	0			REV__ENST00000432045.6_1_7:130565395-130565941:-|nuORF	REV__ENST00000432045.6_1_7:130565395-130565941:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.33319091796875	2	498.23607	994.457586	-0.56904	-0.00028351	-1.4696	-0.00073221	-2.0386	-0.0010157	498.2347267747818	133.3	1.7211	132.18	131.63	133.35	-1.1249					57	34	3	0	0	0	0.027303	1	10745	10745		96.19	62.018	1	73226	+		31412	25730	25849	25874	34627	34627					-0.0398640909434107
LLARELCIN	9	Unmodified	_LLARELCIN_					0	0	0		nc|ENSG00000185024|Q92994-7|BRF1;nc|ENSG00000185024|Q92994-8|BRF1;nc|ENSG00000185024|Q92994-5|BRF1;ENSG00000185024|ENST00000547530|BRF1	nc|ENSG00000185024|Q92994-7|BRF1	nc|ENSG00000185024|Q92994-7|BRF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.7947998046875	2	522.797152	1043.57975	-2.9152	-0.0015241	-2.3275	-0.0012168	-5.2427	-0.0027409	522.7959107342928	88.087	1.5038	85.485	85.028	86.532	-2.6027					46	29	2	0	0	0	0.19758	1	7515	7515		76.774	7.9873	1	305510			31413	8215	25850	25875	34628	34628					0.05970375979518394
LLARELCIN	9	Unmodified	_LLARELCIN_					0	0	0		nc|ENSG00000185024|Q92994-7|BRF1;nc|ENSG00000185024|Q92994-8|BRF1;nc|ENSG00000185024|Q92994-5|BRF1;ENSG00000185024|ENST00000547530|BRF1	nc|ENSG00000185024|Q92994-7|BRF1	nc|ENSG00000185024|Q92994-7|BRF1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	522.797152	1043.57975	0.82998	0.00043391	-5.6373	-0.0029472	-4.8073	-0.0025132	522.7941280548933	86.912	1.4798	85.481	84.856	86.335	-1.4311	0.014343	-0.0012512	NaN	76.774	49	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240140			31414	8215	25850	25875							0.05970375979518394
LLARELCIN	9	Unmodified	_LLARELCIN_					0	0	0		nc|ENSG00000185024|Q92994-7|BRF1;nc|ENSG00000185024|Q92994-8|BRF1;nc|ENSG00000185024|Q92994-5|BRF1;ENSG00000185024|ENST00000547530|BRF1	nc|ENSG00000185024|Q92994-7|BRF1	nc|ENSG00000185024|Q92994-7|BRF1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	522.797152	1043.57975	-0.90141	-0.00047126	-3.2855	-0.0017176	-4.1869	-0.0021889	522.7954378638158	87.611	1.5792	85.435	84.934	86.513	-2.1768	-0.032179	0.0012079	NaN	76.774	57	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	346630			31415	8215	25850	25875							0.05970375979518394
LLARGHFV	8	Unmodified	_LLARGHFV_					0	0	0		ENST00000467302.5_1_1:109234995-109235238:+|nuORF	ENST00000467302.5_1_1:109234995-109235238:+|nuORF	ENST00000467302.5_1_1:109234995-109235238:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	456.7719421386719	2	456.774337	911.534121	-0.55209	-0.00025218	-4.0019	-0.0018279	-4.5539	-0.0020801	456.77237766888294	142.31	1.8774	142.08	141.37	143.25	-0.22697					97	37	4	0	0	0	0.74361	1	14264	14264		29.842	1.9593	1	225920			31416	12310	25851	25876	34629	34629					0.07481518579470503
LLARGYRVE	9	Unmodified	_LLARGYRVE_					0	0	0		tr|A0A7D6VNH1|A0A7D6VNH1_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12845PE=4SV=1	tr|A0A7D6VNH1|A0A7D6VNH1_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12845PE=4SV=1	tr|A0A7D6VNH1|A0A7D6VNH1_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12845PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.8623046875	2	538.81419	1075.61383	2.682	0.0014451	2.2457	0.00121	4.9277	0.0026551	538.8153727200149	133.69	0.24295	132.17	132	132.24	-1.5257					8	4	3	0	0	0	0.027462	1	12905	12905		30.504	0	1	27126			31417	34705	25852	25877	34630	34630					0.07904540462777732
LLARINSLL	9	Unmodified	_LLARINSLL_					0	0	0		tr|A0A7D6VML0|A0A7D6VML0_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_12065PE=4SV=1	tr|A0A7D6VML0|A0A7D6VML0_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_12065PE=4SV=1	tr|A0A7D6VML0|A0A7D6VML0_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_12065PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.26715087890625	2	506.829309	1011.64407	0.35092	0.00017786	-0.84955	-0.00043058	-0.49863	-0.00025272	506.8287378742011	67.627	0.64889	64.739	64.54	65.189	-2.8873					15	12	2	0	0	0	0.027462	1	2858	2858		20.947	2.6225	1	19116			31418	34661	25853	25878	34631	34631					0.1387089912798274
LLARIYSLN	9	Unmodified	_LLARIYSLN_					0	0	0			REV__tr|A0A553SSC1|A0A553SSC1_NIACIUreacarboxylaseOS=NialliacirculansOX=1397GN=ucaPE=4SV=1	REV__tr|A0A553SSC1|A0A553SSC1_NIACIUreacarboxylaseOS=NialliacirculansOX=1397GN=ucaPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8175048828125	2	531.818941	1061.62333	-1.1709	-0.00062273	-2.7687	-0.0014725	-3.9397	-0.0020952	531.8172515861532	135.65	2.9373	135.42	134.25	137.18	-0.22697					99	59	3	0	0	0	0.63422	1	13453	13453		27.882	0	1	54137	+		31419	30819	25854	25879	34632	34632					0.09498308748334239
LLARLAELPLK	11	Unmodified	_LLARLAELPLK_					0	0	0			REV__ENSG00000186648|ENST00000342740|CARMIL3	REV__ENSG00000186648|ENST00000342740|CARMIL3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	412.9276123046875	3	412.939458	1235.79654	-0.5198	-0.00021465	-1.3188	-0.0005446	-1.8386	-0.00075925	412.93950265145463	55.462	0.40601	52.167	51.854	52.26	-3.2944					10	7	2	0	0	0	0.025908	1	3461	3461		27.644	0	1	9815.1	+		31420	22606	25855	25880	34633	34633					0.18807674804747876
LLARLTLPV	9	Unmodified	_LLARLTLPV_					0	0	0			REV__ENST00000371799.8_1_9:137968766-137969066:+|nuORF	REV__ENST00000371799.8_1_9:137968766-137969066:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3335876464844	2	498.334227	994.653902	-0.32382	-0.00016137	-0.21052	-0.00010491	-0.53434	-0.00026628	498.334091062265	122.71	0.88941	122.49	122.12	123.01	-0.21803					72	17	5	0	0	0	0.44568	1	11860	11860		47.657	0	1	2870900	+		31421	24988	25856	25881	34634	34634					0.15636087133373167
LLARPALL	8	Unmodified	_LLARPALL_					0	0	0			REV__chr17:50187537-50188742|164|236.39|0.1|11.19|-|1|COL1A1,COL1A1|1	REV__chr17:50187537-50188742|164|236.39|0.1|11.19|-|1|COL1A1,COL1A1|1	MULTI-MSMS	OvCa9_classI_Rep2	2	433.794921875	2	433.794738	865.574923	0.58254	0.0002527	-0.42547	-0.00018457	0.15707	6.8137E-05	433.7944359498501	111.98	2.1215	111.84	111.47	113.59	-0.13961					92	42	4	0	0	0	0.52992	2	10581	10581;10607		74.517	0	1	565240	+		31422	15947	25857	25882	34635;34636	34635					0.13675859899069565
LLARPALL	8	Unmodified	_LLARPALL_					0	0	0			REV__chr17:50187537-50188742|164|236.39|0.1|11.19|-|1|COL1A1,COL1A1|1	REV__chr17:50187537-50188742|164|236.39|0.1|11.19|-|1|COL1A1,COL1A1|1	MULTI-MSMS	OvCa9_classI_Rep3	3	433.7955627441406	2	433.794738	865.574923	1.6323	0.0007081	-1.4478	-0.00062804	0.18456	8.0061E-05	433.79397915293447	113.07	1.9686	111.99	111.66	113.63	-1.0753					76	38	3	0	0	0	0.68312	1	8324	8324		46.766	0	1	587780	+		31423	15947	25857	25882	34637	34637					0.13675859899069565
LLARPALL	8	Unmodified	_LLARPALL_					0	0	0			REV__chr17:50187537-50188742|164|236.39|0.1|11.19|-|1|COL1A1,COL1A1|1	REV__chr17:50187537-50188742|164|236.39|0.1|11.19|-|1|COL1A1,COL1A1|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	433.79443359375	2	433.794738	865.574923	1.1641	0.000505	-1.5519	-0.00067321	-0.38776	-0.00016821	433.79394637933103	113.56	1.8167	112.11	111.75	113.57	-1.4461					87	35	4	0	0	0	0.60486	1	10520	10520		62.978	0	1	638440	+		31424	15947	25857	25882	34638	34638					0.13675859899069565
LLARPLLQTA	10	Unmodified	_LLARPLLQTA_					0	0	0		ENST00000370526.3_1_X:140270209-140270476:-|nuORF	ENST00000370526.3_1_X:140270209-140270476:-|nuORF	ENST00000370526.3_1_X:140270209-140270476:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	548.346923828125	2	548.347866	1094.68118	0.84752	0.00046473	-2.5027	-0.0013724	-1.6552	-0.00090764	548.34630473212	154.14	1.4394	154.14	153.78	155.22	0					75	28	4	0	0	0	0.71192	1	18042	18042		29.15	2.3535	1	385030			31425	10928	25858	25883	34639	34639					0.13762570673748087
LLARPSLLL	9	Unmodified	_LLARPSLLL_					0	0	0		ENST00000478124.5_1_7:30634537-30662079:+|nuORF;ENSG00000106105|ENST00000389266|GARS1	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.333984375	2	498.334227	994.653902	-0.32382	-0.00016137	-0.21052	-0.00010491	-0.53434	-0.00026628	498.334091062265	122.71	0.88941	122.49	122.12	123.01	-0.21803					72	17	5	0	0	0	0.13482	8	11883	11871;11877;11883;11895;11901;11907;11913;11919		87.754	7.6205	1	2870900			31426	2529	25859	25884	34640;34641;34642;34643;34644;34645;34646;34647	34642					0.15636087133384535
LLARPSLLL	9	Unmodified	_LLARPSLLL_					0	0	0		ENST00000478124.5_1_7:30634537-30662079:+|nuORF;ENSG00000106105|ENST00000389266|GARS1	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3340759277344	2	498.334227	994.653902	0.034655	1.727E-05	-0.51496	-0.00025662	-0.48031	-0.00023935	498.3339335091273	123.54	3.2541	123.31	122.99	126.25	-0.23193					175	65	5	0	0	0	0.19758	7	11981	11981;11987;11992;12010;12016;12040;12127		76.774	7.9873	1	3004600			31427	2529	25859	25884	34648;34649;34650;34651;34652;34653;34654	34648					0.15636087133384535
LLARPSLLL	9	Unmodified	_LLARPSLLL_					0	0	0		ENST00000478124.5_1_7:30634537-30662079:+|nuORF;ENSG00000106105|ENST00000389266|GARS1	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3336181640625	2	498.334227	994.653902	0.2425	0.00012085	-0.5271	-0.00026267	-0.2846	-0.00014182	498.33387359588454	132.52	1.8753	132.29	131.93	133.81	-0.22696					110	37	5	0	0	0	0.33652	1	13069	13069		58.782	7.4465	1	948910			31428	2529	25859	25884	34655	34655					0.15636087133384535
LLARPSLLL	9	Unmodified	_LLARPSLLL_					0	0	0		ENST00000478124.5_1_7:30634537-30662079:+|nuORF;ENSG00000106105|ENST00000389266|GARS1	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3350524902344	2	498.334227	994.653902	1.2058	0.00060088	-1.8531	-0.00092347	-0.64734	-0.00032259	498.3333151769235	123.76	0.97957	122.73	122.31	123.29	-1.0377					75	18	5	0	0	0	0.35444	9	9574	9544;9550;9556;9568;9574;9592;9598;9604;9617		56.721	10.763	1	3991100			31429	2529	25859	25884	34656;34657;34658;34659;34660;34661;34662;34663;34664	34660					0.15636087133384535
LLARPSLLL	9	Unmodified	_LLARPSLLL_					0	0	0		ENST00000478124.5_1_7:30634537-30662079:+|nuORF;ENSG00000106105|ENST00000389266|GARS1	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3334045410156	2	498.334227	994.653902	1.2643	0.00063007	-1.8659	-0.00092985	-0.60157	-0.00029978	498.3332884380841	124.71	3.4398	123.66	123.27	126.71	-1.0519					179	65	5	0	0	0	0.22961	8	9665	9631;9659;9665;9712;9724;9730;9736;9760		71.296	7.2187	1	3929400			31430	2529	25859	25884	34665;34666;34667;34668;34669;34670;34671;34672	34667					0.15636087133384535
LLARPSLLL	9	Unmodified	_LLARPSLLL_					0	0	0		ENST00000478124.5_1_7:30634537-30662079:+|nuORF;ENSG00000106105|ENST00000389266|GARS1	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	498.33404541015625	2	498.334227	994.653902	-0.6989	-0.00034829	0.47295	0.00023569	-0.22596	-0.0001126	498.33435878229506	133.81	2.0717	132.69	132.27	134.34	-1.1226					102	41	4	0	0	0	0.059253	4	10793	10740;10774;10780;10793		113.41	10.638	1	981140			31431	2529	25859	25884	34673;34674;34675;34676	34676					0.15636087133384535
LLARPSLLL	9	Unmodified	_LLARPSLLL_					0	0	0		ENST00000478124.5_1_7:30634537-30662079:+|nuORF;ENSG00000106105|ENST00000389266|GARS1	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3347473144531	2	498.334227	994.653902	-0.9719	-0.00048433	0.35815	0.00017848	-0.61375	-0.00030585	498.3344016114543	124.22	1.0633	122.83	122.32	123.39	-1.3908					81	20	5	0	0	0	0.14998	4	11834	11749;11760;11821;11834		84.916	16.129	1	4028000			31432	2529	25859	25884	34677;34678;34679;34680	34680					0.15636087133384535
LLARPSLLL	9	Unmodified	_LLARPSLLL_					0	0	0		ENST00000478124.5_1_7:30634537-30662079:+|nuORF;ENSG00000106105|ENST00000389266|GARS1	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3341064453125	2	498.334227	994.653902	-1.8174	-0.00090567	1.0953	0.00054583	-0.72208	-0.00035984	498.334772441205	125.12	4.2738	123.72	123.39	127.66	-1.3908					210	84	5	0	0	0	0.33652	3	11916	11880;11916;11964		58.782	3.3696	1	4129000			31433	2529	25859	25884	34681;34682;34683	34682					0.15636087133384535
LLARPSLLL	9	Unmodified	_LLARPSLLL_					0	0	0		ENST00000478124.5_1_7:30634537-30662079:+|nuORF;ENSG00000106105|ENST00000389266|GARS1	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.33380126953125	2	498.334227	994.653902	3.0095	0.0014997	-3.4235	-0.001706	-0.41398	-0.0002063	498.33243610568087	134.14	2.7147	132.61	132.05	134.76	-1.5257					123	54	4	0	0	0	0.083631	2	12966	12966;13003		101.6	16.685	1	1105000			31434	2529	25859	25884	34684;34685	34684					0.15636087133384535
LLARPSLLL	9	Unmodified	_LLARPSLLL_					0	0	0		ENST00000478124.5_1_7:30634537-30662079:+|nuORF;ENSG00000106105|ENST00000389266|GARS1	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3338623046875	2	498.334227	994.653902	1.9139	0.00095378	-2.3002	-0.0011463	-0.38626	-0.00019248	498.33299664402506	137.15	1.8718	135.61	134.84	136.71	-1.5437					88	39	4	0	0	0	0.36502	2	13329	13329;13342		55.504	1.6423	1	198330			31435	2529	25859	25884	34686;34687	34686					0.15636087133384535
LLARRLLLL	9	Unmodified	_LLARRLLLL_					0	0	0		ENST00000264036.5_1_11:119185954-119187791:-|nuORF	ENST00000264036.5_1_11:119185954-119187791:-|nuORF	ENST00000264036.5_1_11:119185954-119187791:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	540.8851928710938	2	540.884419	1079.75428	1.739	0.00094059	0.089379	4.8344E-05	1.8284	0.00098893	540.884313716084	127.84	0.50841	127.84	127.63	128.14	0					24	10	3	0	0	0	0.42057	1	14807	14807		50.025	7.5501	1	275370			31436	9925	25860	25885	34688	34688					0.21759744187033903
LLARTGGKKV	10	Unmodified	_LLARTGGKKV_					0	0	0			REV__ENSG00000162040|ENST00000454677|HS3ST6	REV__ENSG00000162040|ENST00000454677|HS3ST6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.7948608398438	2	521.840208	1041.66586	-3.0225	-0.0015773	2.0652	0.0010777	-0.95733	-0.00049958	521.841021696355	88.162	0.7587	85.559	85.377	86.136	-2.6027					25	14	3	0	0	0	0.026915	1	7528	7528		27.882	3.6795	1	36459	+		31437	20721	25861	25886	34689	34689					0.14669703876552376
LLARTGGKKV	10	Unmodified	_LLARTGGKKV_					0	0	0			REV__ENSG00000162040|ENST00000454677|HS3ST6	REV__ENSG00000162040|ENST00000454677|HS3ST6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.840208	1041.66586	0.78433	0.00040929	-2.0626	-0.0010764	-1.2783	-0.00066707	521.8390655371926	86.854	0.81181	85.423	85.228	86.04	-1.4311	-0.11392	-0.0019817	NaN	27.882	25	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33060	+		31438	20721	25861	25886							0.14669703876552376
LLARTGGKKV	10	Unmodified	_LLARTGGKKV_					0	0	0			REV__ENSG00000162040|ENST00000454677|HS3ST6	REV__ENSG00000162040|ENST00000454677|HS3ST6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	521.840208	1041.66586	-0.67208	-0.00035072	-0.067589	-3.527E-05	-0.73967	-0.00038599	521.8399026943539	87.805	0.97341	85.628	85.345	86.318	-2.1768	0.091585	0.00010045	NaN	27.882	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58852	+		31439	20721	25861	25886							0.14669703876552376
LLARVTDN	8	Unmodified	_LLARVTDN_					0	0	0			REV__ENST00000472420.5_1_2:44123526-44126707:-|nuORF	REV__ENST00000472420.5_1_2:44123526-44126707:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.2829284667969	2	451.258717	900.50288	0.82311	0.00037143	1.8537	0.0008365	2.6768	0.0012079	451.25955159124146	81.14	0.29263	81.14	81.037	81.329	0					12	6	2	0	0	0	0.028476	1	8356	8356		47.916	0	1	265020	+		31440	26311	25862	25887	34690	34690					0.04864900754705559
LLASGHLLI	9	Unmodified	_LLASGHLLI_					0	0	0			REV__ENSG00000182179|ENST00000333486|UBA7	REV__ENSG00000182179|ENST00000333486|UBA7	MULTI-SECPEP	OvCa9_classI_Rep3	3	469.25421142578125	2	468.797478	935.580402	-0.84292	-0.00039516	0.62118	0.00029121	-0.22174	-0.00010395	468.79763927656467	85.905	1.4046	83.685	83.184	84.589	-2.2204					59	27	3	0	0	0	0.027449	1	5131	5131		40.573	7.057	1	116990	+		31441	22267	25863	25888	34691	34691					0.11003538690908954
LLASLQLV	8	Unmodified	_LLASLQLV_					0	0	0			REV__UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	REV__UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	428.2876281738281	2	428.778754	855.542954	0.99809	0.00042796	-0.26784	-0.00011484	0.73025	0.00031312	428.7785583707849	106.38	0.57258	105.12	104.9	105.48	-1.267					15	10	2	0	0	0	0.028476	1	7482	7482		45.952	5.3793	1	16059	+		31442	18816	25864	25889	34692	34692					0.10940447425275579
LLASLQLV	8	Unmodified	_LLASLQLV_					0	0	0			REV__UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	REV__UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	428.778754	855.542954	-0.65464	-0.0002807	0.59175	0.00025373	-0.062893	-2.6967E-05	428.7789651360281	105.56	0.6484	105.12	104.85	105.5	-0.43642	-0.062759	0.00023643	NaN	45.952	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11933	+		31443	18816	25864	25889							0.10940447425275579
LLASQRQLRWR	11	Unmodified	_LLASQRQLRWR_					0	0	0			REV__L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|370|3|anti-sense	REV__L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|370|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.281005859375	3	476.28451	1425.8317	-6.0745	-0.0028932	-2.8703	-0.0013671	-8.9448	-0.0042603	476.2839265464756	160.84	1.1794	159.23	158.53	159.71	-1.6101					50	25	4	0	0	0	0.7246	1	15888	15888		20.837	8.9048	1	46570	+		31444	28525	25865	25890	34693	34693					0.13581730385249102
LLASVGIPI	9	Unmodified	_LLASVGIPI_					0	0	0			REV__tr|A0A7D6VNJ5|A0A7D6VNJ5_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12840PE=4SV=1	REV__tr|A0A7D6VNJ5|A0A7D6VNJ5_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12840PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	441.7887268066406	2	441.786579	881.558604	-1.0261	-0.0004533	3.9619	0.0017503	2.9359	0.001297	441.78822257367193	65.749	1.6562	62.264	61.84	63.496	-3.4854					83	33	3	0	0	0	0.58665	1	4745	4745		33.516	1.5607	1	467330	+		31445	31185	25866	25891	34694	34694					0.11308733942325944
LLASVLPRR	9	Unmodified	_LLASVLPRR_					0	0	0		ENST00000246532.5_2_19:36230484-36230780:-|nuORF	ENST00000246532.5_2_19:36230484-36230780:-|nuORF	ENST00000246532.5_2_19:36230484-36230780:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.835693359375	2	512.834926	1023.6553	0.10768	5.5222E-05	-0.36696	-0.00018819	-0.25928	-0.00013297	512.8346053479938	90.268	1.681	87.693	87.248	88.929	-2.575					80	32	3	0	0	0	0.24951	1	7786	7786		68.787	6.6794	1	345810			31446	9776	25867	25892	34695	34695					0.14441721222135584
LLASVWTQL	9	Unmodified	_LLASVWTQL_					0	0	0			REV__ENST00000531976.1_1_11:1490730-1491405:-|nuORF	REV__ENST00000531976.1_1_11:1490730-1491405:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.31494140625	2	515.800217	1029.58588	0.27329	0.00014096	0.50014	0.00025797	0.77342	0.00039893	515.8020785242921	161.33	0.2021	161.33	161.21	161.41	0					5	3	2	0	0	0	0.027462	1	18912	18912		9.1829	0	1	10098	+		31447	27223	25868	25893	34696	34696					0.07227217482704873
LLATAILGA	9	Unmodified	_LLATAILGA_					0	0	0		ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	MULTI-MSMS	OvCa99_classI_Rep5	1	421.7720031738281	2	421.770929	841.527304	1.3787	0.00058149	0.88424	0.00037295	2.2629	0.00095444	421.7712004262634	123.63	0.54465	123.63	123.42	123.97	0					26	11	3	0	0	0	0.14739	1	14265	14265		85.359	11.104	1	549700			31448	5306	25869	25894	34697	34697					0.10020160908231901
LLATAVLLP	9	Unmodified	_LLATAVLLP_					0	0	0			REV__nc|ENSG00000197430|Q96PE5-3|OPALIN	REV__nc|ENSG00000197430|Q96PE5-3|OPALIN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	455.77630615234375	2	455.802229	909.589904	0.095754	4.3645E-05	3.3922	0.0015462	3.4879	0.0015898	455.8026621940814	39.521	0.29739	36.595	36.445	36.742	-2.9264					9	5	2	0	0	0	0.027462	1	1639	1639		31.955	0	1	5381.2	+		31449	22923	25870	25895	34698	34698					0.13149306976424668
LLATLSKYV	9	Unmodified	_LLATLSKYV_					0	0	0			REV__ENST00000578921.5_1_18:9859614-9859710:+|nuORF	REV__ENST00000578921.5_1_18:9859614-9859710:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	504.3102722167969	2	504.310418	1006.60628	-1.4726	-0.00074263	1.2133	0.00061188	-0.25925	-0.00013074	504.31092076174866	120.79	0.93773	120.59	120.26	121.2	-0.19718					47	18	4	0	0	0	0.44294	1	11653	11653		47.916	3.3845	1	86974	+		31450	27807	25871	25896	34699	34699					0.10324388142521457
LLATRPRQTR	10	Unmodified	_LLATRPRQTR_					0	0	0			REV__ENSG00000145217|ENST00000398516|SLC26A1	REV__ENSG00000145217|ENST00000398516|SLC26A1	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3682861328125	2	606.370195	1210.72584	-3.14	-0.001904	2.1543	0.0013063	-0.98567	-0.00059768	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.77039	1	14910	14910		22.58	3.4761	1	257720	+		31451	19955	25872	25897	34700	34700					0.12890394539772387
LLATTAHDT	9	Unmodified	_LLATTAHDT_					0	0	0			REV__chr9:131863140-131867112|94|11.17|0.11|6.66|-|0|MED27,None|2	REV__chr9:131863140-131867112|94|11.17|0.11|6.66|-|0|MED27,None|2	MULTI-MSMS	OvCa9_classI_Rep2	2	471.7488708496094	2	471.748182	941.481811	-0.87595	-0.00041323	0.52109	0.00024582	-0.35487	-0.00016741	471.7482986041781	116.14	1.3366	116.03	115.69	117.02	-0.11777					59	26	3	0	0	0	0.55588	1	11118	11118		37.159	0	1	260110	+		31452	16122	25873	25898	34701	34701					0.008728906551823457
LLAVFMATLA	10	Unmodified	_LLAVFMATLA_					0	0	0			REV__tr|A0A553SGH4|A0A553SGH4_NIACIBranched-chainaminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_10895PE=3SV=1	REV__tr|A0A553SGH4|A0A553SGH4_NIACIBranched-chainaminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_10895PE=3SV=1	MSMS	OvCa9_classI_Rep4_	4	525.3283081054688	2	525.306821	1048.59909	NaN	NaN	NaN	NaN	NaN	NaN	NaN	157.88	1	156.33	155.83	156.83	-1.545								0	0	0	0.1385	1	15611	15611		25.45	3.4903	1		+		31453	29700	25874	25899	34702	34702					0.07673332270451283
LLAVLLLPWA	10	Unmodified	_LLAVLLLPWA_					0	0	0			REV__nc|ENSG00000073008|P15151-3|PVR	REV__nc|ENSG00000073008|P15151-3|PVR	MULTI-MSMS	OvCa9_classI_Rep2	2	554.8634033203125	2	554.860078	1107.7056	2.7519	0.0015269	3.4094	0.0018917	6.1613	0.0034186	554.861798260073	27.986	0.52749	25.276	25.111	25.638	-2.7097					23	10	4	0	0	0	0.84764	1	546	546		12.959	5.2689	1	37661	+		31454	16929	25875	25900	34703	34703					0.15605830827280442
LLAVPDPQRLS	11	Unmodified	_LLAVPDPQRLS_					0	0	0			REV__nc|ENSG00000124243|Q8TDM0-2|BCAS4	REV__nc|ENSG00000124243|Q8TDM0-2|BCAS4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	604.8311767578125	2	604.853512	1207.69247	0.74759	0.00045218	-4.4807	-0.0027102	-3.7331	-0.002258	605.3505254750531	78.495	0.28238	75.679	75.506	75.788	-2.8165					7	5	2	0	0	0	0.025909	1	6308	6308		26.693	3.1702	1	23028	+		31455	28830	25876	25901	34704	34704					0.09693347977213307
LLAVPPIVAQ	10	Unmodified	_LLAVPPIVAQ_					0	0	0		tr|A0A553SLI4|A0A553SLI4_NIACIProbablemultidrugresistanceproteinNorMOS=NialliacirculansOX=1397GN=CEQ21_20695PE=3SV=1	tr|A0A553SLI4|A0A553SLI4_NIACIProbablemultidrugresistanceproteinNorMOS=NialliacirculansOX=1397GN=CEQ21_20695PE=3SV=1	tr|A0A553SLI4|A0A553SLI4_NIACIProbablemultidrugresistanceproteinNorMOS=NialliacirculansOX=1397GN=CEQ21_20695PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	510.80810546875	2	510.826235	1019.63792	-0.51728	-0.00026424	4.3107	0.002202	3.7934	0.0019378	510.8272594405304	99.922	0.31271	98.237	97.985	98.297	-1.685					7	5	2	0	0	0	0.026665	1	6738	6738		51.335	2.1247	1	18662			31456	33726	25877	25902	34705	34705					0.12888380896470153
LLAVRELV	8	Unmodified	_LLAVRELV_					0	0	0		ENSG00000278053|ENST00000617633|DDX52	ENSG00000278053|ENST00000617633|DDX52	ENSG00000278053|ENST00000617633|DDX52	MULTI-MSMS	OvCa9_classI_Rep2	2	456.79693603515625	2	456.797478	911.580402	0.45168	0.00020633	-0.42864	-0.0001958	0.023038	1.0524E-05	456.7970931669125	115.48	1.1861	115.37	114.9	116.08	-0.11777					40	23	2	0	0	0	0.66057	1	11016	11016		51.335	3.4199	1	86613			31457	9588	25878	25903	34706	34706					0.1210753869089558
LLAVRGDLL	9	Unmodified	_LLAVRGDLL_					0	0	0			REV__PNPLA7|p.V595Dfs*35|1|0.23|ENSG00000130653|chr9:137498144-137498145|-/T|frameshift_variant	REV__PNPLA7|p.V595Dfs*35|1|0.23|ENSG00000130653|chr9:137498144-137498145|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.29132080078125	2	485.30821	968.601866	-1.4907	-0.00072343	1.6219	0.0007871	0.1312	6.3673E-05	485.30880489085837	107.13	0.88043	105.25	104.91	105.79	-1.8785					36	16	3	0	0	0	0.027462	1	9730	9730		33.516	8.0654	1	67769	+		31458	18957	25879	25904	34707	34707					0.11630923719621933
LLAVRGDLL	9	Unmodified	_LLAVRGDLL_					0	0	0			REV__PNPLA7|p.V595Dfs*35|1|0.23|ENSG00000130653|chr9:137498144-137498145|-/T|frameshift_variant	REV__PNPLA7|p.V595Dfs*35|1|0.23|ENSG00000130653|chr9:137498144-137498145|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.29132080078125	2	485.30821	968.601866	-0.57391	-0.00027852	0.81987	0.00039789	0.24596	0.00011937	485.308488164208	106.19	1.0772	104.18	103.74	104.82	-2.0161					53	20	3	0	0	0	0.027462	1	9730	9730		33.516	8.0654	1	302800	+		31459	18957	25879	25904	34708	34708					0.11630923719621933
LLAVRGDLL	9	Unmodified	_LLAVRGDLL_					0	0	0			REV__PNPLA7|p.V595Dfs*35|1|0.23|ENSG00000130653|chr9:137498144-137498145|-/T|frameshift_variant	REV__PNPLA7|p.V595Dfs*35|1|0.23|ENSG00000130653|chr9:137498144-137498145|-/T|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	485.30821	968.601866	-0.258	-0.00012521	0.24798	0.00012035	-0.010017	-4.8615E-06	485.3080906953274	105.68	1.0486	105.25	104.95	106	-0.43642	-0.050277	-0.0003041	NaN	7.1934	42	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44745	+		31460	18957	25879	25904							0.11630923719621933
LLAVRGDLL	9	Unmodified	_LLAVRGDLL_					0	0	0			REV__PNPLA7|p.V595Dfs*35|1|0.23|ENSG00000130653|chr9:137498144-137498145|-/T|frameshift_variant	REV__PNPLA7|p.V595Dfs*35|1|0.23|ENSG00000130653|chr9:137498144-137498145|-/T|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	485.30821	968.601866	0.040341	1.9578E-05	-0.0071547	-3.4722E-06	0.033186	1.6106E-05	485.3080276562511	106.66	0.80579	105.39	104.96	105.76	-1.267	0.097044	-0.00055174	NaN	7.1934	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56228	+		31461	18957	25879	25904							0.11630923719621933
LLAVVSNVI	9	Unmodified	_LLAVVSNVI_					0	0	0			REV__ENSG00000138075|ENST00000405322|ABCG5	REV__ENSG00000138075|ENST00000405322|ABCG5	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.2781677246094	2	464.29731	926.580068	0.37614	0.00017464	-0.57002	-0.00026466	-0.19388	-9.002E-05	464.2969175275303	82.546	0.26106	80.947	80.802	81.063	-1.5989					6	4	2	0	0	0	0.027462	1	7053	7053		27.882	3.6795	1	32462	+		31462	19506	25880	25905	34709	34709					0.1138411897103424
LLAWRSLL	8	Unmodified	_LLAWRSLL_					0	0	0		L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|371|3|anti-sense	L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|371|3|anti-sense	L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|371|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	486.3053894042969	2	486.30547	970.596387	0.60247	0.00029298	-1.3637	-0.00066315	-0.76119	-0.00037017	486.3047947264386	124.97	2.7662	124.74	124.37	127.13	-0.2359					156	55	5	0	0	0	0.62934	1	12240	12240		57.811	9.8957	1	3410600			31463	14732	25881	25906	34710	34710					0.10991244927799926
LLAWSLAIP	9	Unmodified	_LLAWSLAIP_					0	0	0			REV__ENST00000403491.7_1_1:61923769-61923901:+|nuORF	REV__ENST00000403491.7_1_1:61923769-61923901:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	492.2970886230469	2	492.299853	982.585153	0.468	0.0002304	-4.4619	-0.0021966	-3.9939	-0.0019662	492.2973790880381	97.748	0.92992	96.789	96.414	97.344	-0.95856					47	18	4	0	0	0	0.17908	1	8863	8863		79.939	12.446	1	309990	+		31464	25427	25882	25907	34711	34711					0.09316422833637716
LLCAYILLL	9	Unmodified	_LLCAYILLL_					0	0	0		nc|ENSG00000137872|Q8NFY4-7|SEMA6D;SEMA6D|p.H496Pfs*9|1|0.07|ENSG00000137872|chr15:47765927-47765928|CA/-|frameshift_variant;nc|ENSG00000137872|Q8NFY4-8|SEMA6D;nc|ENSG00000137872|Q8NFY4-3|SEMA6D;nc|ENSG00000137872|Q8NFY4-2|SEMA6D;nc|ENSG00000137872|Q8NFY4-4|SEMA6D;nc|ENSG00000137872|Q8NFY4-5|SEMA6D;nc|ENSG00000137872|Q8NFY4-6|SEMA6D;SEMA6D|p.K1055Ifs*20|1|0.02|ENSG00000137872|chr15:47771726-47771727|-/TTATTACATTTTCCTAT|frameshift_variant;ENSG00000137872|ENST00000536845|SEMA6D	nc|ENSG00000137872|Q8NFY4-7|SEMA6D	nc|ENSG00000137872|Q8NFY4-7|SEMA6D	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.2777099609375	2	517.819564	1033.62458	0.50234	0.00026012	-0.74556	-0.00038606	-0.24322	-0.00012594	517.8207235982456	79.025	1.9017	76.685	76.111	78.013	-2.3399					113	37	4	0	0	0	0.02744	1	4238	4238		49.211	0	1	499820			31465	4633	25883	25908	34712	34712					0.10910806792890071
LLCDWLAG	8	Unmodified	_LLCDWLAG_					0	0	0			REV__ENSG00000164880|ENST00000404767|INTS1	REV__ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	OvCa99_classI_Rep5	1	445.7245178222656	2	445.725664	889.436775	2.3909	0.0010657	-4.2188	-0.0018804	-1.8279	-0.00081473	445.72363855278405	127.28	1.0854	127.28	127.05	128.14	0					43	23	2	0	0	0	0.65582	1	14762	14762		52.299	4.6418	1	377230	+		31466	21030	25884	25909	34713	34713					-0.012366314116889043
LLCECLLLV	9	Unmodified	_LLCECLLLV_					0	0	0		nc|ENSG00000121940|Q96S66-4|CLCC1;nc|ENSG00000121940|Q96S66-3|CLCC1;nc|ENSG00000121940|Q96S66-2|CLCC1;ENSG00000121940|ENST00000369969|CLCC1;chr1:108932501-108934620|420|11.25|0.0|20.1|-|ENST00000675128|CLCC1,CLCC1	nc|ENSG00000121940|Q96S66-4|CLCC1	nc|ENSG00000121940|Q96S66-4|CLCC1	MULTI-SECPEP	OvCa9_classI_Rep2	2	509.8058776855469	2	509.787407	1017.56026	0.1222	6.2296E-05	-1.6728	-0.00085279	-1.5506	-0.00079049	510.2882992448291	111.14	0.19685	111	110.88	111.08	-0.13961					6	3	2	0	0	0	0.027462	1	10479	10479		50.025	18.495	1	6026.3			31467	3507	25885	25910	34714	34714					0.05218283644433086
LLCEKLIR	8	Unmodified	_LLCEKLIR_					0	0	0		ENST00000369605.8_2_6:86386824-86386884:-|nuORF	ENST00000369605.8_2_6:86386824-86386884:-|nuORF	ENST00000369605.8_2_6:86386824-86386884:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	494.30010986328125	2	494.304613	986.594672	-5.5844	-0.0027604	-2.0973	-0.0010367	-7.6817	-0.0037971	494.3034903870968	153.96	1.4815	152.95	152.62	154.1	-1.0076					78	30	5	0	0	0	0.74679	1	13176	13176		28.254	1.4582	1	602630			31468	10900	25886	25911	34715	34715					0.10083867847527017
LLCEMEQQNQ	10	Unmodified	_LLCEMEQQNQ_					0	0	0		ENST00000399211.7_1_17:16744211-16749072:-|nuORF	ENST00000399211.7_1_17:16744211-16749072:-|nuORF	ENST00000399211.7_1_17:16744211-16749072:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	618.2757568359375	2	618.27338	1234.53221	0.23904	0.00014779	0.51343	0.00031744	0.75247	0.00046523	618.2735546296128	162.2	0.60445	162.2	161.92	162.53	0					42	11	5	0	0	0	0.53885	1	19010	19010		49.442	1.7842	1	922590			31469	11383	25887	25912	34716	34716					-0.0756769107360924
LLCEVMREP	9	Unmodified	_LLCEVMREP_					0	0	0		ENSG00000171487|ENST00000390649|NLRP5	ENSG00000171487|ENST00000390649|NLRP5	ENSG00000171487|ENST00000390649|NLRP5	MULTI-MSMS	OvCa99_classI_Rep5	1	545.274169921875	2	545.275195	1088.53584	2.4713	0.0013475	-3.2107	-0.0017507	-0.73945	-0.0004032	545.2733901333769	121.36	0.4943	121.36	121.21	121.71	0					24	10	3	0	0	0	0.3249	1	13966	13966		60.118	6.7668	1	177240			31470	7201	25888	25913	34717	34717					-0.004889765091093068
LLCFFFLL	8	Unmodified	_LLCFFFLL_					0	0	0		ENST00000541143.5_1_12:131453487-131453694:+|nuORF	ENST00000541143.5_1_12:131453487-131453694:+|nuORF	ENST00000541143.5_1_12:131453487-131453694:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.2729187011719	2	508.2879	1014.56125	2.9092	0.0014787	-4.2903	-0.0021807	-1.3812	-0.00070203	508.2854520305362	134.38	0.6445	132.86	132.59	133.23	-1.5257					14	12	2	0	0	0	0.028476	1	12975	12975		43.626	10.133	1	12395			31471	13462	25889	25914	34718	34718					0.05454866075638165
LLCFFFLL	8	Unmodified	_LLCFFFLL_					0	0	0		ENST00000541143.5_1_12:131453487-131453694:+|nuORF	ENST00000541143.5_1_12:131453487-131453694:+|nuORF	ENST00000541143.5_1_12:131453487-131453694:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	508.2879	1014.56125	0.037582	1.9102E-05	-1.4776	-0.00075105	-1.44	-0.00073195	508.2869298719805	133.33	0.39478	133.11	132.87	133.26	-0.22696	0.12309	0.0017017	NaN	43.626	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9380.9			31472	13462	25889	25914							0.05454866075638165
LLCGIIRGAL	10	Unmodified	_LLCGIIRGAL_					0	0	0		nc|ENSG00000173626|Q5T215-2|TRAPPC3L;ENSG00000173626|ENST00000368602|TRAPPC3L	nc|ENSG00000173626|Q5T215-2|TRAPPC3L	nc|ENSG00000173626|Q5T215-2|TRAPPC3L	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.281005859375	2	514.817887	1027.62122	0.7795	0.0004013	3.5615	0.0018335	4.341	0.0022348	514.8201935317434	104.35	0.41676	102.91	102.66	103.07	-1.4347					12	7	2	0	0	0	0.026639	1	7262	7262		27.882	0	1	25162			31473	7400	25890	25915	34719	34719					0.108515567388622
LLCHADQV	8	Unmodified	_LLCHADQV_					0	0	0			REV__ENST00000459870.6_1_3:49135615-49135771:-|nuORF	REV__ENST00000459870.6_1_3:49135615-49135771:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	449.75335693359375	2	449.726195	897.437837	-0.036597	-1.6458E-05	-2.3542	-0.0010588	-2.3908	-0.0010752	449.725105820382	39.31	0.22473	39.31	39.151	39.376	0					5	4	2	0	0	0	0.028476	1	2285	2285		23.042	0	1	109570	+		31474	26067	25891	25916	34720	34720					-0.014984170427851495
LLCIFLWL	8	Unmodified	_LLCIFLWL_					0	0	0		ENST00000471736.5_1_4:158142110-158255356:+|nuORF	ENST00000471736.5_1_4:158142110-158255356:+|nuORF	ENST00000471736.5_1_4:158142110-158255356:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	510.8006286621094	2	510.801174	1019.5878	0.80057	0.00040893	-1.1408	-0.00058272	-0.34022	-0.00017378	510.8004762883351	67.815	1.2016	64.928	64.639	65.841	-2.8873					58	23	4	0	0	0	0.7543	1	2911	2911		24.504	0.30126	1	205880			31475	12387	25892	25917	34721	34721					0.07878554966976026
LLCIPLLVGK	10	Unmodified	_LLCIPLLVGK_					0	0	0		ENST00000239940.11_1_3:149683956-149684166:-|nuORF	ENST00000239940.11_1_3:149683956-149684166:-|nuORF	ENST00000239940.11_1_3:149683956-149684166:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.77783203125	2	534.846113	1067.67767	-1.216	-0.00065039	0.15075	8.0628E-05	-1.0653	-0.00056976	534.8465583561709	76.652	0.23398	73.714	73.598	73.832	-2.9389					6	4	2	0	0	0	0.026982	1	6103	6103		16.473	0	1	21668			31476	9756	25893	25918	34722	34722					0.1465418457553369
LLCIYRRP	8	Unmodified	_LLCIYRRP_					0	0	0		ENST00000561463.1_1_15:102312101-102312521:+|nuORF	ENST00000561463.1_1_15:102312101-102312521:+|nuORF	ENST00000561463.1_1_15:102312101-102312521:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.3235473632812	2	517.302404	1032.59026	-0.38922	-0.00020135	-0.4	-0.00020692	-0.78922	-0.00040827	517.3017705895081	105.39	0.64423	103.37	103.15	103.79	-2.0161					17	12	2	0	0	0	0.028476	1	9596	9596		44.531	7.372	1	81287			31477	13754	25894	25919	34723	34723					0.07526403424617456
LLCKGSAVRV	10	Unmodified	_LLCKGSAVRV_					0	0	0		tr|A0A7D6ZWG3|A0A7D6ZWG3_9CLOTEutN/CcmLfamilymicrocompartmentproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17700PE=4SV=1	tr|A0A7D6ZWG3|A0A7D6ZWG3_9CLOTEutN/CcmLfamilymicrocompartmentproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17700PE=4SV=1	tr|A0A7D6ZWG3|A0A7D6ZWG3_9CLOTEutN/CcmLfamilymicrocompartmentproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17700PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.763427734375	2	523.312969	1044.61138	-3.1929	-0.0016709	1.4839	0.00077653	-1.709	-0.00089436	523.3136232104887	104.08	0.51146	104.08	103.81	104.32	0					17	11	2	0	0	0	0.026891	1	11677	11677		39.253	0	1	190780			31478	35842	25895	25920	34724	34724					0.09086368733483141
LLCKIFVML	9	Unmodified	_LLCKIFVML_					0	0	0		LPAR6|p.S92F|1|0.17|ENSG00000139679|chr13:48412149-48412149|G/A|missense_variant	LPAR6|p.S92F|1|0.17|ENSG00000139679|chr13:48412149-48412149|G/A|missense_variant	LPAR6|p.S92F|1|0.17|ENSG00000139679|chr13:48412149-48412149|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.3104858398438	2	540.321417	1078.62828	2.1138	0.0011421	1.9311	0.0010434	4.0449	0.0021855	540.3226735655202	118	0.27258	118	117.88	118.16	0					9	5	2	0	0	0	0.027462	1	13542	13542		28.254	8.8943	1	99933			31479	14800	25896	25921	34725	34725					0.0921115329508666
LLCLAALAL	9	Unmodified	_LLCLAALAL_					0	0	0			REV__ENSG00000162998|ENST00000295113|FRZB	REV__ENSG00000162998|ENST00000295113|FRZB	MULTI-MSMS	OvCa9_classI_Rep2	2	450.78485107421875	2	450.782982	899.55141	4.7325	0.0021333	-0.52966	-0.00023876	4.2029	0.0018946	450.78259742847797	27.516	0.58479	24.806	24.66	25.245	-2.7097					22	13	2	0	0	0	0.61768	1	482	482		29.842	0	1	50831	+		31480	20798	25897	25922	34726	34726					0.09761678070231028
LLCLADAVWSD	11	Unmodified	_LLCLADAVWSD_					0	0	0			REV__ENST00000548520.1_1_12:104283206-104286955:-|nuORF	REV__ENST00000548520.1_1_12:104283206-104286955:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	602.3134155273438	2	603.297181	1204.57981	2.8716	0.0017324	2.3345	0.0014084	5.2061	0.0031408	603.2983707160547	98.953	1.7682	98.953	98.801	100.57	0					67	42	3	0	0	0	0.025746	1	10974	10974		32.812	8.2932	1	1303300	+		31481	27443	25898	25923	34727	34727					-0.014296688111244293
LLCLERKN	8	Unmodified	_LLCLERKN_					0	0	0			REV__ENST00000434603.2_1_11:75316186-75316648:-|nuORF	REV__ENST00000434603.2_1_11:75316186-75316648:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	494.78216552734375	2	494.784044	987.553536	-1.0978	-0.00054319	-2.5582	-0.0012658	-3.6561	-0.001809	494.7826271232193	61.627	1.8441	58.867	58.04	59.884	-2.7593					92	35	4	0	0	0	0.66057	1	4609	4609		51.335	3.4199	1	363280	+		31482	25758	25899	25924	34728	34728					0.0592610680805592
LLCLFPTITV	10	Unmodified	_LLCLFPTITV_					0	0	0			REV__nc|ENSG00000203581|Q96R84|OR1F2P	REV__nc|ENSG00000203581|Q96R84|OR1F2P	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.763671875	2	560.327753	1118.64095	0.51122	0.00028645	-2.2283	-0.0012486	-1.717	-0.0009621	560.3265051237336	64.584	0.41866	64.584	64.375	64.793	0					13	9	2	0	0	0	0.026982	1	5857	5857		23.042	1.0826	1	174220	+		31483	29092	25900	25925	34729	34729					0.08637887958957435
LLCLGAWGEV	10	Unmodified	_LLCLGAWGEV_					0	0	0			REV__ENST00000494150.1_1_22:39478019-39478325:+|nuORF	REV__ENST00000494150.1_1_22:39478019-39478325:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.302978515625	2	530.778428	1059.5423	2.2355	0.0011866	2.5726	0.0013655	4.8081	0.002552	530.7795160860491	115.58	0.93353	115.58	115.25	116.19	0					38	19	3	0	0	0	0.026519	1	13193	13193		76.847	13.313	1	305920	+		31484	26720	25901	25926	34730	34730					0.014912847139157748
LLCLIFIAI	9	Unmodified	_LLCLIFIAI_					0	0	0			REV__tr|A0A7D6ZI58|A0A7D6ZI58_9CLOTCarbohydrateABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02955PE=3SV=1	REV__tr|A0A7D6ZI58|A0A7D6ZI58_9CLOTCarbohydrateABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02955PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.8052673339844	2	509.822107	1017.62966	0.036456	1.8586E-05	-1.5622	-0.00079644	-1.5257	-0.00077786	509.82265282711194	112.7	0.49425	111.19	110.95	111.44	-1.5111					13	9	2	0	0	0	0.027462	1	10430	10430		21.702	0	1	11052	+		31485	32048	25902	25927	34731	34731					0.12155110655464796
LLCLPLTRCT	10	Unmodified	_LLCLPLTRCT_					0	0	0			REV__ENST00000301021.7_1_16:88928598-88928910:+|nuORF	REV__ENST00000301021.7_1_16:88928598-88928910:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.8157958984375	2	566.814487	1131.61442	1.6155	0.00091566	0.55291	0.0003134	2.1684	0.0012291	566.8149073889535	110.19	2.7767	108.59	108.28	111.06	-1.6011					118	52	4	0	0	0	0.69986	1	10116	10116		30.504	0	1	1542500	+		31486	24242	25903	25928	34732	34732					0.05387875795963737
LLCLQRII	8	Unmodified	_LLCLQRII_					0	0	0			REV__ENST00000564685.5_1_16:70731013-70778503:-|nuORF	REV__ENST00000564685.5_1_16:70731013-70778503:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	486.30523681640625	2	486.307155	970.599758	-1.0237	-0.00049782	-2.7767	-0.0013503	-3.8003	-0.0018481	486.3057082440577	120.4	1.6293	120.23	119.94	121.57	-0.17138					88	32	4	0	0	0	0.73288	1	11658	11658		35.201	1.6851	1	594410	+		31487	17591	25904	25929	34733	34733					0.11328171710158585
LLCLYFLI	8	Unmodified	_LLCLYFLI_					0	0	0		ENST00000203630.9_2_12:6857197-6857296:-|nuORF	ENST00000203630.9_2_12:6857197-6857296:-|nuORF	ENST00000203630.9_2_12:6857197-6857296:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.9445495605469	2	499.293182	996.571812	-1.0502	-0.00052435	-4.3063	-0.0021501	-5.3565	-0.0026745	499.2912569304468	81.152	0.2454	78.441	78.298	78.543	-2.7106					6	4	2	0	0	0	0.028476	1	6655	6655		33.493	0	1	15702			31488	9648	25905	25930	34734	34734					0.07338848730057634
LLCPKTHPS	9	Unmodified	_LLCPKTHPS_					0	0	0		ENST00000262888.7_1_19:44285036-44285354:-|nuORF	ENST00000262888.7_1_19:44285036-44285354:-|nuORF	ENST00000262888.7_1_19:44285036-44285354:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.33319091796875	2	498.27077	994.526987	-0.62541	-0.00031162	1.3847	0.00068995	0.75927	0.00037832	498.2712978373455	133.53	1.4756	132.41	132.03	133.5	-1.1249					56	29	3	0	0	0	0.027047	1	10745	10745		76.774	0	1	87751			31489	9902	25906	25931	34735	34735					0.02950417916713377
LLCPLHHML	9	Oxidation (M)	_LLCPLHHM(Oxidation (M))L_		LLCPLHHM(1)L		LLCPLHHM(49)L	0	0	1			REV__ENST00000309315.8_1_7:44809212-44809260:+|nuORF	REV__ENST00000309315.8_1_7:44809212-44809260:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	546.7894897460938	2	546.788272	1091.56199	1.7347	0.00094849	-1.278	-0.00069878	0.45668	0.00024971	546.7875042857248	128.14	2.3869	128.14	127.76	130.15	0					70	50	2	0	0	0	0.42921	2	14882	14882;14891		49.211	12.764	1	707900	+		31490	24321	25907	25932	34736;34737	34736		557			0.01987337453033433
LLCPQNHGR	9	Unmodified	_LLCPQNHGR_					0	0	0			REV__CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	REV__CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.2879638671875	2	519.269093	1036.52363	-2.1264	-0.0011042	3.1776	0.00165	1.0511	0.00054583	519.2700802225762	126.84	0.24779	125.41	125.24	125.49	-1.4357					6	4	2	0	0	0	0.027462	1	12095	12095		11.511	0	1	7604.1	+		31491	15732	25908	25933	34738	34738					0.006831678627349902
LLCQCNLSQPH	11	Unmodified	_LLCQCNLSQPH_					0	0	0			REV__ENSG00000179532|ENST00000254579|DNHD1	REV__ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	628.3023681640625	2	628.299733	1254.58491	0.15746	9.8933E-05	1.6359	0.0010278	1.7934	0.0011268	628.3007437507579	57.255	1.5713	53.91	53.527	55.098	-3.3449					94	30	4	0	0	0	0.48738	1	3717	3717		54.776	0	1	686880	+		31492	22127	25909	25934	34739	34739					-0.032196882201560584
LLCQCNLSQPH	11	Unmodified	_LLCQCNLSQPH_					0	0	0			REV__ENSG00000179532|ENST00000254579|DNHD1	REV__ENSG00000179532|ENST00000254579|DNHD1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	628.299733	1254.58491	-1.4655	-0.00092077	3.1086	0.0019531	1.643	0.0010323	628.3016072982439	56.803	1.288	53.999	53.473	54.761	-2.804	0.044416	0.0012999	NaN	54.776	63	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133910	+		31493	22127	25909	25934							-0.032196882201560584
LLCQLISLLPP	11	Unmodified	_LLCQLISLLPP_					0	0	0		ENST00000563829.5_1_15:75145788-75146232:-|nuORF	ENST00000563829.5_1_15:75145788-75146232:-|nuORF	ENST00000563829.5_1_15:75145788-75146232:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	605.3707885742188	2	605.36741	1208.72027	1.9891	0.0012041	1.0266	0.00062147	3.0157	0.0018256	605.3673649121051	126.33	1.5624	126.33	125.67	127.23	0					85	33	4	0	0	0	0.29406	1	14600	14600		68.846	7.1549	1	1394000			31494	13791	25910	25935	34740	34740					0.12425534913109004
LLCQVVKI	8	Carbamidomethyl (C)	_LLC(Carbamidomethyl (C))QVVKI_	LLC(1)QVVKI		LLC(89)QVVKI		0	1	0		UBN1|p.T1047Rfs*17|1|0.21|ENSG00000118900|chr16:4876985-4876986|-/GGAGGAT|frameshift_variant;nc|ENSG00000118900|Q9NPG3-2|UBN1;ENSG00000118900|ENST00000262376|UBN1	UBN1|p.T1047Rfs*17|1|0.21|ENSG00000118900|chr16:4876985-4876986|-/GGAGGAT|frameshift_variant	UBN1|p.T1047Rfs*17|1|0.21|ENSG00000118900|chr16:4876985-4876986|-/GGAGGAT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	486.79840087890625	2	486.799163	971.583773	1.9392	0.00094401	-3.1991	-0.0015573	-1.2599	-0.00061331	486.79745204043013	95.517	1.3917	95.517	94.648	96.039	0					71	32	4	0	0	0	0.39692	1	10441	10441		88.643	8.7036	1	4534500			31495	3331	25911	25936	34741	34741	31				0.09684465473264936
LLCSGPSVLL	10	Unmodified	_LLCSGPSVLL_					0	0	0			REV__ENST00000536690.1_1_11:64064895-64067293:+|nuORF	REV__ENST00000536690.1_1_11:64064895-64067293:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	501.2917785644531	2	501.288628	1000.5627	-0.80197	-0.00040202	4.3304	0.0021708	3.5285	0.0017688	501.2906816095173	135.63	4.8104	135.4	133.71	138.52	-0.22697					221	98	3	0	0	0	0.71192	1	13666	13666		29.15	4.9468	1	70595	+		31496	27302	25912	25937	34742	34742					0.06244455373735036
LLCSVYYL	8	Unmodified	_LLCSVYYL_					0	0	0		ENST00000521663.1_1_8:58192902-58193274:+|nuORF	ENST00000521663.1_1_8:58192902-58193274:+|nuORF	ENST00000521663.1_1_8:58192902-58193274:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	487.28253173828125	2	487.256797	972.499041	-1.0785	-0.00052548	4.0631	0.0019798	2.9846	0.0014543	487.2584779352393	94.478	0.85399	92.582	92.307	93.161	-1.8956					36	16	3	0	0	0	0.028476	1	6161	6161		46.766	5.9883	1	105530			31497	13128	25913	25938	34743	34743					0.011690949366311543
LLCVAACLF	9	Carbamidomethyl (C)	_LLC(Carbamidomethyl (C))VAACLF_	LLC(0.999)VAAC(0.001)LF		LLC(31)VAAC(-31)LF		0	1	0			REV__ENST00000329608.10_2_1:110472972-110473137:+|nuORF	REV__ENST00000329608.10_2_1:110472972-110473137:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	505.26715087890625	2	505.264099	1008.51364	1.8782	0.00094898	3.2583	0.0016463	5.1365	0.0025953	505.2656223498235	134.35	1.7333	134.35	133.58	135.31	0					55	37	3	0	0	0	0.32242	1	15640	15640		60.404	8.1045	2	710990	+		31498	24521	25914	25939	34744	34744	293				0.009728438131219264
LLCVMLLLI	9	Unmodified	_LLCVMLLLI_					0	0	0			REV__tr|A0A7D7A385|A0A7D7A385_9CLOTNa+/H+antiporterOS=ClostridiumintestinaleOX=36845GN=HZF06_11690PE=3SV=1	REV__tr|A0A7D7A385|A0A7D7A385_9CLOTNa+/H+antiporterOS=ClostridiumintestinaleOX=36845GN=HZF06_11690PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	515.8244018554688	2	515.823792	1029.63303	1.3839	0.00071384	-0.75219	-0.000388	0.63169	0.00032584	515.8233107191149	119.78	1.9983	118.75	118.33	120.33	-1.0271					81	39	4	0	0	0	0.14417	1	9106	9106		85.909	0	1	287890	+		31499	32573	25915	25940	34745	34745					0.1194003743785288
LLCVPPLPL	9	Unmodified	_LLCVPPLPL_					0	0	0		ENST00000274853.7_1_6:30653758-30653977:-|nuORF	ENST00000274853.7_1_6:30653758-30653977:-|nuORF	ENST00000274853.7_1_6:30653758-30653977:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.2581787109375	2	482.798632	963.582711	-0.28608	-0.00013812	3.3556	0.0016201	3.0696	0.001482	482.8003506940398	58.509	1.4545	55.117	54.498	55.953	-3.392					55	28	3	0	0	0	0.02744	1	3877	3877		29.842	0	1	91084			31500	10022	25916	25941	34746	34746					0.09946251104349813
LLCWGPGGI	9	Unmodified	_LLCWGPGGI_					0	0	0		ENSG00000119147|ENST00000238044|ECRG4	ENSG00000119147|ENST00000238044|ECRG4	ENSG00000119147|ENST00000238044|ECRG4	MULTI-MSMS	OvCa9_classI_Rep2	2	458.2391662597656	2	458.241481	914.468409	-0.48888	-0.00022402	-4.0419	-0.0018522	-4.5307	-0.0020762	458.2395351157387	52.859	1.7336	50.045	49.591	51.325	-2.8139					75	34	3	0	0	0	0.42921	1	3575	3575		49.211	12.052	1	376680			31501	3345	25917	25942	34747	34747					0.007753613422664785
LLCYGHPL	8	Unmodified	_LLCYGHPL_					0	0	0		nc|ENSG00000159640|P12821-4|ACE;nc|ENSG00000159640|P12821-3|ACE	nc|ENSG00000159640|P12821-4|ACE	nc|ENSG00000159640|P12821-4|ACE	MULTI-MSMS	OvCa9_classI_Rep2	2	458.2386474609375	2	458.241481	914.468409	-0.48888	-0.00022402	-4.0419	-0.0018522	-4.5307	-0.0020762	458.2395351157387	52.859	1.7336	50.045	49.591	51.325	-2.8139					75	34	3	0	0	0	0.69862	1	3569	3569		43.626	1.1516	1	376680			31502	15125	25918	25943	34748	34748					0.007753613422664785
LLCYKIMEF	9	Oxidation (M)	_LLCYKIM(Oxidation (M))EF_		LLCYKIM(1)EF		LLCYKIM(82)EF	0	0	1			REV__nc|ENSG00000147050|O15550|KDM6A;REV__nc|ENSG00000183878|O14607-5|UTY	REV__nc|ENSG00000147050|O15550|KDM6A	MULTI-MSMS	OvCa9_classI_Rep4_	4	588.2992553710938	2	588.295596	1174.57664	-2.2315	-0.0013128	3.4208	0.0020125	1.1893	0.00069966	588.2974844195226	87.759	1.4634	85.132	84.799	86.262	-2.6269					76	28	4	0	0	0	0.16524	1	7485	7485		82.305	9.4258	1	1131500	+		31503	20039;22393	25919	25944	34749	34749		463			-0.00366635189493536
LLDAKNILI	9	Unmodified	_LLDAKNILI_					0	0	0			REV__ENSG00000041802|ENST00000265245|LSG1	REV__ENSG00000041802|ENST00000265245|LSG1	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.8110046386719	2	506.823692	1011.63283	-1.4711	-0.00074557	-0.063177	-3.202E-05	-1.5342	-0.00077759	506.82350224428393	101.11	0.73056	99.505	99.294	100.02	-1.6053					18	13	2	0	0	0	0.02741	1	6896	6896		71.296	0	1	21321	+		31504	16633	25920	25945	34750	34750					0.12748077033870686
LLDAYRHQL	9	Unmodified	_LLDAYRHQL_					0	0	0			REV__ENSG00000096401|ENST00000371477|CDC5L	REV__ENSG00000096401|ENST00000371477|CDC5L	MULTI-MSMS	OvCa99_classI_Rep5	1	564.8104858398438	2	564.811648	1127.60874	0.87316	0.00049317	-3.0592	-0.0017279	-2.1861	-0.0012347	564.8098555563217	161.04	2.4687	161.04	160.06	162.53	0					104	48	3	0	0	0	0.42676	1	18861	18861		49.442	0	1	105670	+		31505	17306	25921	25946	34751	34751					0.050042366001889604
LLDCSGLIV	9	Unmodified	_LLDCSGLIV_					0	0	0			REV__nc|ENSG00000131849|P52740-2|ZNF132	REV__nc|ENSG00000131849|P52740-2|ZNF132	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.7995300292969	2	466.759704	931.504854	-0.35722	-0.00016674	-3.3708	-0.0015733	-3.728	-0.0017401	466.75813208373296	104.44	0.68207	102.32	101.96	102.64	-2.1192					25	12	3	0	0	0	0.027462	1	9484	9484		55.504	21.989	1	23959	+		31506	19039	25922	25947	34752	34752					0.03636193448312497
LLDCSGLIV	9	Unmodified	_LLDCSGLIV_					0	0	0			REV__nc|ENSG00000131849|P52740-2|ZNF132	REV__nc|ENSG00000131849|P52740-2|ZNF132	MULTI-MATCH	OvCa9_classI_Rep2	2		2	466.759704	931.504854	-0.98485	-0.00045969	-1.8493	-0.00086318	-2.8341	-0.0013229	466.7586082170456	103.15	0.64082	102.47	102.13	102.77	-0.68459	0.072278	0.0009451	NaN	55.504	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24025	+		31507	19039	25922	25947							0.03636193448312497
LLDDRGGLDR	10	Unmodified	_LLDDRGGLDR_					0	0	0			REV__ENSG00000182580|ENST00000330394|EPHB3	REV__ENSG00000182580|ENST00000330394|EPHB3	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.8515014648438	2	565.301644	1128.58874	3.008	0.0017004	-3.9076	-0.002209	-0.89967	-0.00050859	565.2996007789159	86.442	0.5694	86.442	86.192	86.761	0					22	13	2	0	0	0	0.026826	1	9125	9125		29.17	0	1	390830	+		31508	22304	25923	25948	34753	34753					0.02958440869565493
LLDDVLFNL	9	Unmodified	_LLDDVLFNL_					0	0	0			REV__tr|A0A7D6VVW3|A0A7D6VVW3_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23260PE=4SV=1	REV__tr|A0A7D6VVW3|A0A7D6VVW3_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23260PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	531.7982788085938	2	531.297507	1060.58046	1.1465	0.00060915	-2.1338	-0.0011337	-0.98725	-0.00052452	531.7975985359121	155.48	0.91931	155.48	155.12	156.04	0					52	17	5	0	0	0	0.46377	1	18223	18223		45.952	1.8352	1	347640	+		31509	31737	25924	25949	34754	34754					0.05259493900257439
LLDEEISRV	9	Unmodified	_LLDEEISRV_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MSMS	OvCa9_classI_Rep2	2	537.2952880859375	2	537.295496	1072.57644	0.8078	0.00043403	-1.4557	-0.00078215	-0.64791	-0.00034812	537.2948560362137	90.424	2.5194	89.122	88.581	91.101	-1.302					154	48	6	0	0	0	0.0085876	10	7990	7969;7974;7980;7984;7990;7996;8002;8008;8015;8022		176.44	75.454	1	1122100			31510	2909	25925	25950	34755;34756;34757;34758;34759;34760;34761;34762;34763;34764	34759					0.04305404406522939
LLDEEISRV	9	Unmodified	_LLDEEISRV_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MSMS	OvCa9_classI_Rep3	3	537.295654296875	2	537.295496	1072.57644	0.30147	0.00016198	-1.044	-0.00056093	-0.74252	-0.00039895	537.2949042196778	91.13	2.6981	89.106	88.418	91.116	-2.0241					115	54	3	0	0	0	0.014622	6	5711	5688;5693;5699;5705;5711;5719		154.12	57.218	1	2286500			31511	2909	25925	25950	34765;34766;34767;34768;34769;34770	34769					0.04305404406522939
LLDEEISRV	9	Unmodified	_LLDEEISRV_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.2962646484375	2	537.295496	1072.57644	-1.3416	-0.00072083	1.0999	0.00059099	-0.24165	-0.00012984	537.29613926542	91.509	2.6355	88.966	88.142	90.778	-2.5425					108	51	3	0	0	0	0.011767	7	7920	7910;7920;7932;7944;7957;7971;7984		163.15	51.732	1	2133400			31512	2909	25925	25950	34771;34772;34773;34774;34775;34776;34777	34772					0.04305404406522939
LLDELVVSNQ	10	Unmodified	_LLDELVVSNQ_					0	0	0			REV__nc|ENSG00000173040|Q86UK5-2|EVC2	REV__nc|ENSG00000173040|Q86UK5-2|EVC2	MULTI-MSMS	OvCa9_classI_Rep2	2	565.3067016601562	2	565.308603	1128.60265	0.20207	0.00011423	-1.6397	-0.00092695	-1.4377	-0.00081272	565.3076159501649	96.83	2.3607	95.871	95.481	97.841	-0.95857					161	47	5	0	0	0	0.10076	1	8799	8799		113.41	3.0744	1	3204400	+		31513	21743	25926	25951	34778	34778					0.04349673578008151
LLDELVVSNQ	10	Unmodified	_LLDELVVSNQ_					0	0	0			REV__nc|ENSG00000173040|Q86UK5-2|EVC2	REV__nc|ENSG00000173040|Q86UK5-2|EVC2	MULTI-MSMS	OvCa9_classI_Rep3	3	565.3093872070312	2	565.308603	1128.60265	-0.66072	-0.00037351	-0.72628	-0.00041058	-1.387	-0.00078408	565.3081769044711	97.601	2.4979	95.841	95.465	97.963	-1.7595					157	48	5	0	0	0	0.15262	2	6527	6527;6568		101.6	7.5943	1	5088000	+		31514	21743	25926	25951	34779;34780	34779					0.04349673578008151
LLDEYRKP	8	Unmodified	_LLDEYRKP_					0	0	0			REV__ENST00000491845.5_2_3:58978268-59035690:-|nuORF	REV__ENST00000491845.5_2_3:58978268-59035690:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.2777099609375	2	517.287474	1032.5604	0.3896	0.00020153	-1.5033	-0.00077764	-1.1137	-0.0005761	517.2866795417685	78.765	0.84	76.413	76.149	76.989	-2.3527					31	16	3	0	0	0	0.028476	1	4238	4238		33.516	0	1	294220	+		31515	26684	25927	25952	34781	34781					0.04541742960304873
LLDEYRKP	8	Unmodified	_LLDEYRKP_					0	0	0			REV__ENST00000491845.5_2_3:58978268-59035690:-|nuORF	REV__ENST00000491845.5_2_3:58978268-59035690:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	517.287474	1032.5604	-0.49156	-0.00025428	-1.7312	-0.00089553	-2.2228	-0.0011498	517.2865671960786	79.29	0.52145	76.538	76.322	76.844	-2.7514	0.062849	-6.5942E-05	NaN	25.45	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260070	+		31516	26684	25927	25952							0.04541742960304873
LLDFALIKV	9	Unmodified	_LLDFALIKV_					0	0	0			REV__nc|ENSG00000115970|Q6YHU6-6|THADA	REV__nc|ENSG00000115970|Q6YHU6-6|THADA	MULTI-MSMS	OvCa9_classI_Rep3	3	516.32763671875	2	516.328611	1030.64267	1.8915	0.00097663	-2.3464	-0.0012115	-0.4549	-0.00023488	516.3273063704338	111.37	1.3837	110.26	109.9	111.29	-1.1038					71	27	4	0	0	0	0.14998	1	8090	8090		84.916	7.5979	1	205270	+		31517	18281	25928	25953	34782	34782					0.1285726503922433
LLDGSKDYF	9	Unmodified	_LLDGSKDYF_					0	0	0		tr|A0A553SIP5|A0A553SIP5_NIACIPA14domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15290PE=4SV=1	tr|A0A553SIP5|A0A553SIP5_NIACIPA14domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15290PE=4SV=1	tr|A0A553SIP5|A0A553SIP5_NIACIPA14domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15290PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.8099365234375	2	529.263665	1056.51278	-1.5938	-0.00084354	1.6693	0.00088347	0.075445	3.993E-05	529.2631205770509	81.441	0.34373	78.731	78.543	78.887	-2.7106					10	6	2	0	0	0	0.027433	1	6692	6692		54.776	0	1	32789			31518	33406	25929	25954	34783	34783					-0.013219560305742561
LLDGSRASSR	10	Unmodified	_LLDGSRASSR_					0	0	0			REV__chr1:200913623-200915075|88|18.01|0.25|6.2|+|1|INAVA,INAVA|1	REV__chr1:200913623-200915075|88|18.01|0.25|6.2|+|1|INAVA,INAVA|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.8064575195312	2	531.288537	1060.56252	-1.2321	-0.00065459	3.7435	0.0019889	2.5114	0.0013343	531.2904072217915	94.316	0.93633	91.848	91.524	92.46	-2.4685					28	18	2	0	0	0	0.026714	1	8242	8242		42.864	17.29	1	115550	+		31519	15811	25930	25955	34784	34784					0.03466171698096332
LLDGSRASSR	10	Unmodified	_LLDGSRASSR_					0	0	0			REV__chr1:200913623-200915075|88|18.01|0.25|6.2|+|1|INAVA,INAVA|1	REV__chr1:200913623-200915075|88|18.01|0.25|6.2|+|1|INAVA,INAVA|1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	531.288537	1060.56252	-0.69564	-0.00036958	3.5128	0.0018663	2.8172	0.0014967	531.2903486169707	93.012	0.92084	91.844	91.498	92.418	-1.168	0.040173	-8.1717E-05	NaN	28.081	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79446	+		31520	15811	25930	25955							0.03466171698096332
LLDGSRASSR	10	Unmodified	_LLDGSRASSR_					0	0	0			REV__chr1:200913623-200915075|88|18.01|0.25|6.2|+|1|INAVA,INAVA|1	REV__chr1:200913623-200915075|88|18.01|0.25|6.2|+|1|INAVA,INAVA|1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	531.288537	1060.56252	-0.8696	-0.00046201	3.4324	0.0018236	2.5628	0.0013616	531.2903421994404	93.681	0.86776	91.719	91.526	92.394	-1.9617	-0.084137	-0.00016718	NaN	28.081	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138910	+		31521	15811	25930	25955							0.03466171698096332
LLDGTIDFIAT	11	Unmodified	_LLDGTIDFIAT_					0	0	0		tr|A0A553SP64|A0A553SP64_NIACIDihydroorotaseOS=NialliacirculansOX=1397GN=pyrCPE=3SV=1	tr|A0A553SP64|A0A553SP64_NIACIDihydroorotaseOS=NialliacirculansOX=1397GN=pyrCPE=3SV=1	tr|A0A553SP64|A0A553SP64_NIACIDihydroorotaseOS=NialliacirculansOX=1397GN=pyrCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.8181762695312	2	589.818804	1177.62306	-0.47501	-0.00028017	0.19506	0.00011505	-0.27995	-0.00016512	589.818780533452	121.35	0.87628	120	119.74	120.62	-1.3479					35	16	3	0	0	0	0.56722	1	11436	11436		47.657	1.6851	1	60714			31522	34006	25931	25956	34785	34785					0.041348442378193795
LLDGTIDFIAT	11	Unmodified	_LLDGTIDFIAT_					0	0	0		tr|A0A553SP64|A0A553SP64_NIACIDihydroorotaseOS=NialliacirculansOX=1397GN=pyrCPE=3SV=1	tr|A0A553SP64|A0A553SP64_NIACIDihydroorotaseOS=NialliacirculansOX=1397GN=pyrCPE=3SV=1	tr|A0A553SP64|A0A553SP64_NIACIDihydroorotaseOS=NialliacirculansOX=1397GN=pyrCPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	589.818804	1177.62306	-1.5537	-0.00091642	1.6156	0.00095289	0.061822	3.6464E-05	589.8193905741103	120.36	0.74012	120.19	119.94	120.68	-0.17138	0.12444	0.0016	NaN	47.657	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39466			31523	34006	25931	25956							0.041348442378193795
LLDGTIDFIAT	11	Unmodified	_LLDGTIDFIAT_					0	0	0		tr|A0A553SP64|A0A553SP64_NIACIDihydroorotaseOS=NialliacirculansOX=1397GN=pyrCPE=3SV=1	tr|A0A553SP64|A0A553SP64_NIACIDihydroorotaseOS=NialliacirculansOX=1397GN=pyrCPE=3SV=1	tr|A0A553SP64|A0A553SP64_NIACIDihydroorotaseOS=NialliacirculansOX=1397GN=pyrCPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	589.818804	1177.62306	0.21813	0.00012865	-0.31328	-0.00018478	-0.095157	-5.6125E-05	589.8184731156496	121.02	0.77898	120	119.71	120.48	-1.0271	-0.066212	-0.00067533	NaN	47.657	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65543			31524	34006	25931	25956							0.041348442378193795
LLDHLHLEL	9	Unmodified	_LLDHLHLEL_					0	0	0		nc|ENSG00000140455|Q9Y6I4-2|USP3;ENSG00000140455|ENST00000380324|USP3	nc|ENSG00000140455|Q9Y6I4-2|USP3	nc|ENSG00000140455|Q9Y6I4-2|USP3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.8112182617188	2	551.816399	1101.61824	-0.672	-0.00037082	-0.20124	-0.00011105	-0.87324	-0.00048187	551.816592643138	106.11	1.1333	104.1	103.79	104.93	-2.0161					46	21	3	0	0	0	0.027462	1	9736	9736		29.15	0	1	53831			31525	4841	25932	25957	34786	34786					0.07150004885693306
LLDHLRLSI	9	Unmodified	_LLDHLRLSI_					0	0	0		ENST00000406117.6_1_22:44322822-44359208:+|nuORF;nc|ENSG00000100344|Q9NST1-2|PNPLA3;ENSG00000100344|ENST00000216180|PNPLA3	ENST00000406117.6_1_22:44322822-44359208:+|nuORF	ENST00000406117.6_1_22:44322822-44359208:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3299560546875	2	540.332216	1078.64988	-1.5762	-0.00085169	-2.2598	-0.001221	-3.836	-0.0020727	540.3309156564876	138.68	4.2384	138.45	137.13	141.37	-0.22697					227	86	3	0	0	0	0.61208	1	13872	13872		30.504	0	1	66382			31526	2049	25933	25958	34787	34787					0.11369997639667417
LLDHQGELF	9	Unmodified	_LLDHQGELF_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1;ENST00000526423.1_1_11:46700589-46702208:-|nuORF	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.28076171875	2	536.277106	1070.53966	1.6548	0.00088746	4.229	0.0022679	5.8839	0.0031554	536.2791305918773	135.51	0.70378	135.51	135.22	135.92	0					40	14	4	0	0	0	0.24951	1	15806	15806		68.787	5.4806	1	617950			31527	7526	25934	25959	34788	34788					0.007211525806042118
LLDHVLLTL	9	Unmodified	_LLDHVLLTL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.Q2259H|1|0.16|ENSG00000137076|chr9:35699453-35699453|C/A|missense_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OvCa99_classI_Rep5	1	518.8251953125	2	518.823692	1035.63283	0.94466	0.00049011	0.97752	0.00050716	1.9222	0.00099727	518.8241967314773	132.95	1.783	132.95	132.51	134.29	0					72	37	2	0	0	0	0.015253	1	15458	15458		152.63	33.412	1	2401300			31528	4552	25935	25960	34789	34789					0.11644077033838585
LLDILKHLV	9	Unmodified	_LLDILKHLV_					0	0	0			REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	MULTI-MSMS	OvCa9_classI_Rep3	3	532.3474731445312	2	532.347335	1062.68012	-1.1269	-0.00059991	0.89196	0.00047483	-0.23494	-0.00012507	532.347799829167	138.02	1.078	136.94	136.58	137.66	-1.0858					40	21	3	0	0	0	0.53957	1	11288	11288		38.806	1.647	1	36059	+		31529	21336	25936	25961	34790	34790					0.1512835630483096
LLDIQDITI	9	Unmodified	_LLDIQDITI_					0	0	0		tr|A0A553STS6|A0A553STS6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_05635PE=4SV=1	tr|A0A553STS6|A0A553STS6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_05635PE=4SV=1	tr|A0A553STS6|A0A553STS6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_05635PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	522.303466796875	2	522.30279	1042.59103	1.2815	0.00066935	0.64529	0.00033704	1.9268	0.0010064	522.3030460233057	135.86	0.61026	135.86	135.55	136.16	0					28	12	3	0	0	0	0.060996	1	15825	15825		112.41	10.81	1	314670			31530	34527	25937	25962	34791	34791					0.0714347655466554
LLDKALQVL	9	Unmodified	_LLDKALQVL_					0	0	0			REV__chr1:153990820-153991115|286|12.54|0.76|4.05|+|0|None,RPS27|1	REV__chr1:153990820-153991115|286|12.54|0.76|4.05|+|0|None,RPS27|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.80877685546875	2	506.823692	1011.63283	-1.246	-0.00063152	-1.8868	-0.00095628	-3.1329	-0.0015878	506.8227150525415	100.26	0.59547	99.434	99.311	99.906	-0.83051					17	11	2	0	0	0	0.027433	1	9163	9163		74.255	17.534	1	24464	+		31531	15800	25938	25963	34792	34792					0.1274807703384795
LLDKGAVK	8	Unmodified	_LLDKGAVK_					0	0	0		nc|ENSG00000064607|Q8IX01-4|SUGP2;nc|ENSG00000064607|Q8IX01-3|SUGP2;ENSG00000064607|ENST00000452918|SUGP2;ENST00000598240.1_1_19:19105804-19136912:-|nuORF	nc|ENSG00000064607|Q8IX01-4|SUGP2	nc|ENSG00000064607|Q8IX01-4|SUGP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	422.25335693359375	2	422.268553	842.522553	-0.17847	-7.5361E-05	0.408	0.00017229	0.22953	9.6925E-05	422.26860706992187	53.823	0.77079	53.823	53.564	54.334	0					30	18	2	0	0	0	0.028476	1	4303	4303		57.811	0	1	797390			31532	1301	25939	25964	34793	34793					0.09499276765473041
LLDKIIGA	8	Unmodified	_LLDKIIGA_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	OvCa99_classI_Rep5	1	421.7716979980469	2	421.770929	841.527304	1.3787	0.00058149	0.88424	0.00037295	2.2629	0.00095444	421.7712004262634	123.63	0.54465	123.63	123.42	123.97	0					26	11	3	0	0	0	0.37357	2	14243	14243;14279		93.195	0	1	549700			31533	7686	25940	25965	34794;34795	34794					0.10020160908231901
LLDKLILL	8	Unmodified	_LLDKLILL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	OvCa99_classI_Rep5	1	470.8269348144531	2	470.825704	939.636855	0.66106	0.00031124	-0.10183	-4.7944E-05	0.55923	0.0002633	470.82550127095874	161.06	3.0909	161.06	159.47	162.56	0					174	61	3	0	0	0	0.2826	1	18883	18883		110.34	0	1	597670			31534	3189	25941	25966	34796	34796					0.16462166527560385
LLDLKFACKDN	11	Unmodified	_LLDLKFACKDN_					0	0	0			REV__sp|Q7M6N6|SCP_HCMVASmallcapsomere-interactingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=SCPPE=1SV=1	REV__sp|Q7M6N6|SCP_HCMVASmallcapsomere-interactingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=SCPPE=1SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	640.34375	2	640.339381	1278.66421	-0.074961	-4.8E-05	2.7049	0.0017321	2.63	0.0016841	640.3411241833008	52.277	2.1733	49.069	48.742	50.915	-3.208					129	42	5	0	0	0	0.70032	1	3167	3167		9.1829	0	1	2332400	+		31535	29407	25942	25967	34797	34797					0.036022820056359706
LLDLKISA	8	Unmodified	_LLDLKISA_					0	0	0		tr|A0A553SJ19|A0A553SJ19_NIACIATPphosphoribosyltransferaseOS=NialliacirculansOX=1397GN=hisGPE=3SV=1	tr|A0A553SJ19|A0A553SJ19_NIACIATPphosphoribosyltransferaseOS=NialliacirculansOX=1397GN=hisGPE=3SV=1	tr|A0A553SJ19|A0A553SJ19_NIACIATPphosphoribosyltransferaseOS=NialliacirculansOX=1397GN=hisGPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.7748107910156	2	436.776211	871.537869	-0.44072	-0.00019249	-2.8293	-0.0012358	-3.27	-0.0014283	436.7748691455194	144.87	2.2884	143.44	143.04	145.33	-1.4357					111	43	5	0	0	0	0.7043	2	14260	14260;14296		42.474	0	1	1417100			31536	33454	25943	25968	34798;34799	34798					0.0969614356265538
LLDMLRLMQ	9	Unmodified	_LLDMLRLMQ_					0	0	0			REV__ENST00000481749.5_1_3:138374233-138426144:-|nuORF	REV__ENST00000481749.5_1_3:138374233-138426144:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.8152465820312	2	566.814487	1131.61442	1.6155	0.00091566	0.55291	0.0003134	2.1684	0.0012291	566.8149073889535	110.19	2.7767	108.59	108.28	111.06	-1.6011					118	52	4	0	0	0	0.61208	1	10193	10193		30.504	0	1	1542500	+		31537	16688	25944	25969	34800	34800					0.05387875795963737
LLDMWENK	8	Unmodified	_LLDMWENK_					0	0	0		ENSG00000164949|ENST00000297596|GEM	ENSG00000164949|ENST00000297596|GEM	ENSG00000164949|ENST00000297596|GEM	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.2841186523438	2	524.760235	1047.50592	-0.67425	-0.00035382	-2.2588	-0.0011853	-2.933	-0.0015391	524.7588802303194	115.23	0.74011	114.17	113.85	114.59	-1.055					18	14	2	0	0	0	0.028476	1	8516	8516		21.96	0	1	21167			31538	6505	25945	25970	34801	34801					-0.015935921828031496
LLDPNVKSIFV	11	Unmodified	_LLDPNVKSIFV_					0	0	0		ENSG00000117419|ENST00000372257|ERI3;nc|ENSG00000117419|O43414-2|ERI3;nc|ENSG00000117419|O43414-3|ERI3	ENSG00000117419|ENST00000372257|ERI3	ENSG00000117419|ENST00000372257|ERI3	MULTI-MSMS	OvCa99_classI_Rep5	1	622.8685913085938	2	622.866089	1243.71762	2.0683	0.0012883	0.29634	0.00018458	2.3647	0.0014729	622.8662273037068	121.84	0.69962	121.84	121.47	122.17	0					50	14	4	0	0	0	0.18846	1	14015	14015		81.525	28.436	1	723240			31539	3254	25946	25971	34802	34802					0.10551402779788077
LLDPRRPEI	9	Unmodified	_LLDPRRPEI_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;ENST00000461353.1_1_1:19547256-19547301:-|nuORF	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.3016967773438	2	554.827298	1107.64004	0.41238	0.0002288	-1.1508	-0.00063852	-0.73847	-0.00040972	554.8267064654284	75.254	0.82272	72.024	71.773	72.596	-3.2308					31	16	3	0	0	0	0.027455	1	5891	5891		51.335	5.3632	1	67752			31540	3832	25947	25972	34803	34803					0.09052809634272307
LLDPRRPEI	9	Unmodified	_LLDPRRPEI_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;ENST00000461353.1_1_1:19547256-19547301:-|nuORF	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	554.827298	1107.64004	0.19026	0.00010556	-0.62878	-0.00034886	-0.43852	-0.0002433	554.826956006478	74.254	0.73515	72.283	71.904	72.639	-1.9711	0.19563	-0.00066079	NaN	42.396	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23423			31541	3832	25947	25972							0.09052809634272307
LLDQSVGKL	9	Unmodified	_LLDQSVGKL_					0	0	0			REV__ENSG00000167513|ENST00000301019|CDT1	REV__ENSG00000167513|ENST00000301019|CDT1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.7911071777344	2	486.78985	971.565146	-1.0393	-0.0005059	0.65613	0.0003194	-0.38313	-0.00018651	486.79011721031304	89.857	1.4345	87.777	87.439	88.873	-2.0805					87	27	5	0	0	0	0.12515	1	5576	5576		90.37	5.209	1	1234900	+		31542	21282	25948	25973	34804	34804					0.07822627103041668
LLDQTKTLA	9	Unmodified	_LLDQTKTLA_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OvCa99_classI_Rep5	1	501.7969970703125	2	501.795132	1001.57571	-1.2979	-0.00065127	2.0274	0.0010173	0.72946	0.00036604	501.79571477607885	70.028	0.52933	70.028	69.798	70.328	0					25	12	3	0	0	0	0.020196	1	6692	6692		146.79	37.307	1	1970700			31543	4552	25949	25974	34805	34805					0.07498609757465147
LLDQTKTLA	9	Unmodified	_LLDQTKTLA_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	501.795132	1001.57571	-1.4102	-0.00070763	0.47379	0.00023775	-0.9364	-0.00046988	501.7952217749428	73.496	0.5327	70.1	69.833	70.366	-3.3961	0.035872	-0.00026246	NaN	146.79	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113540			31544	4552	25949	25974							0.07498609757465147
LLDRCGVF	8	Unmodified	_LLDRCGVF_					0	0	0		ENSG00000175215|ENST00000398073|CTDSP2	ENSG00000175215|ENST00000398073|CTDSP2	ENSG00000175215|ENST00000398073|CTDSP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	461.7445068359375	2	461.744388	921.474223	-0.9628	-0.00044457	1.8189	0.00083986	0.85608	0.00039529	461.74509928976033	117.12	2.1532	115.76	115.46	117.61	-1.3645					88	40	4	0	0	0	0.61758	1	10935	10935		60.294	0	1	521240			31545	7524	25950	25975	34806	34806					0.010344598539177241
LLDRFLATV	9	Unmodified	_LLDRFLATV_					0	0	0		nc|ENSG00000118816|Q14094-2|CCNI;ENSG00000118816|ENST00000237654|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	MULTI-MSMS	OvCa99_classI_Rep5	1	524.3143920898438	2	524.313492	1046.61243	1.6369	0.00085824	0.60683	0.00031817	2.2437	0.0011764	524.313680994276	120.2	1.094	120.2	119.92	121.01	0					66	25	4	0	0	0	0.017173	3	13816	13793;13816;13844		150.36	45.615	1	5467600			31546	3325	25951	25976	34807;34808;34809	34808					0.09098906374038052
LLDRFLATV	9	Unmodified	_LLDRFLATV_					0	0	0		nc|ENSG00000118816|Q14094-2|CCNI;ENSG00000118816|ENST00000237654|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	MULTI-MSMS	OvCa9_classI_Rep2	2	524.312255859375	2	524.313492	1046.61243	-0.54782	-0.00028723	1.7965	0.0009419	1.2486	0.00065467	524.3144059068588	121.52	1.6813	121.32	120.8	122.48	-0.19718					79	33	4	0	0	0	0.10502	5	11758	11740;11745;11751;11758;11770		95.815	29.386	1	278140			31547	3325	25951	25976	34810;34811;34812;34813;34814	34813					0.09098906374038052
LLDRFLATV	9	Unmodified	_LLDRFLATV_					0	0	0		nc|ENSG00000118816|Q14094-2|CCNI;ENSG00000118816|ENST00000237654|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	MULTI-MSMS	OvCa9_classI_Rep3	3	524.3126831054688	2	524.313492	1046.61243	0.99568	0.00052205	0.50599	0.0002653	1.5017	0.00078735	524.3138505577132	122.48	1.3582	121.45	121.16	122.52	-1.0286					84	25	5	0	0	0	0.055627	6	9426	9415;9420;9426;9432;9438;9445		115.49	34.823	1	461900			31548	3325	25951	25976	34815;34816;34817;34818;34819;34820	34817					0.09098906374038052
LLDRFLATV	9	Unmodified	_LLDRFLATV_					0	0	0		nc|ENSG00000118816|Q14094-2|CCNI;ENSG00000118816|ENST00000237654|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.3123168945312	2	524.313492	1046.61243	-0.2043	-0.00010712	1.1139	0.00058402	0.90957	0.0004769	524.3142204837009	122.87	1.5348	121.51	121.06	122.59	-1.3666					112	30	5	0	0	0	0.060996	4	11605	11605;11617;11629;11641		112.41	40.533	1	428050			31549	3325	25951	25976	34821;34822;34823;34824	34821					0.09098906374038052
LLDRHKELD	9	Unmodified	_LLDRHKELD_					0	0	0			REV__nc|ENSG00000140859|Q9BVG8-4|KIFC3	REV__nc|ENSG00000140859|Q9BVG8-4|KIFC3	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.8172607421875	2	569.814387	1137.61422	1.7066	0.00097243	-1.2798	-0.00072927	0.42674	0.00024316	569.8128770805725	125.22	0.11914	125.22	125.17	125.29	0					4	2	2	0	0	0	0.027433	1	14468	14468		60.972	6.1956	1	34109	+		31550	19704	25952	25977	34825	34825					0.050919153919721793
LLDRKNQY	8	Unmodified	_LLDRKNQY_					0	0	0		L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|37|1|sense	L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|37|1|sense	L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|37|1|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	525.2926635742188	2	525.290548	1048.56654	1.0357	0.00054403	2.5311	0.0013295	3.5667	0.0018736	525.291843379011	149.59	1.0335	149.59	149.31	150.34	0					37	20	3	0	0	0	0.65582	1	17501	17501		52.299	0.96372	1	88429			31551	14758	25953	25978	34826	34826					0.044202611917853574
LLDRLLFGL	9	Unmodified	_LLDRLLFGL_					0	0	0			REV__L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|305|2|anti-sense	REV__L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|305|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.2698974609375	2	530.331685	1058.64882	0.92761	0.00049194	-0.85198	-0.00045183	0.07563	4.0109E-05	530.331123766447	138.12	0.71054	136.59	136.26	136.97	-1.5284					25	16	2	0	0	0	0.027462	1	13411	13411		30.504	6.3009	1	18930	+		31552	28533	25954	25979	34827	34827					0.12183783270756976
LLDRLLFGL	9	Unmodified	_LLDRLLFGL_					0	0	0			REV__L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|305|2|anti-sense	REV__L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|305|2|anti-sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.331685	1058.64882	-1.0789	-0.00057215	0.82131	0.00043556	-0.25755	-0.00013659	530.332221275663	136.37	0.68381	136.14	135.91	136.6	-0.22696	-0.28166	0.00013569	NaN	30.504	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11467	+		31553	28533	25954	25979							0.12183783270756976
LLDRLLFGL	9	Unmodified	_LLDRLLFGL_					0	0	0			REV__L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|305|2|anti-sense	REV__L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|305|2|anti-sense	MULTI-MATCH	OvCa9_classI_Rep3	3		2	530.331685	1058.64882	-1.3842	-0.00073408	1.5717	0.00083351	0.1875	9.9438E-05	530.3325507520744	137.62	0.82794	136.53	136.24	137.07	-1.0858	0.11344	0.00093159	NaN	30.504	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11760	+		31554	28533	25954	25979							0.12183783270756976
LLDRSENIKL	10	Unmodified	_LLDRSENIKL_					0	0	0		ENST00000602584.1_1_X:72745151-72745637:-|nuORF	ENST00000602584.1_1_X:72745151-72745637:-|nuORF	ENST00000602584.1_1_X:72745151-72745637:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	400.9045715332031	3	400.903072	1199.68739	2.3868	0.00095686	-2.4054	-0.00096433	-0.018628	-7.4681E-06	400.9020627152264	83.731	1.9627	81.068	80.681	82.643	-2.6629					94	40	3	0	0	0	0.5635	1	7018	7018		46.457	0.54867	1	1295400			31555	14241	25955	25980	34828	34828					0.09553044114591103
LLDSVLWL	8	Unmodified	_LLDSVLWL_					0	0	0		ENSG00000258713|ENST00000603872|C20orf141	ENSG00000258713|ENST00000603872|C20orf141	ENSG00000258713|ENST00000603872|C20orf141	MULTI-MSMS	OvCa9_classI_Rep2	2	479.7826232910156	2	479.784036	957.553519	-1.4095	-0.00067624	-3.3041	-0.0015852	-4.7135	-0.0022615	479.7826892392015	84.442	1.5122	82.896	82.43	83.943	-1.5462					96	29	5	0	0	0	0.56113	1	7267	7267		71.378	11.084	1	364700			31556	9482	25956	25981	34829	34829					0.07304430079705071
LLDTPVKTQ	9	Unmodified	_LLDTPVKTQ_					0	0	0		ENSG00000168769|ENST00000380013|TET2;nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2	ENSG00000168769|ENST00000380013|TET2	ENSG00000168769|ENST00000380013|TET2	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3233947753906	2	507.795132	1013.57571	-1.4449	-0.0007337	-0.777	-0.00039456	-2.2219	-0.0011283	507.7946237014731	104.43	0.50548	104.43	104.19	104.7	0					20	11	2	0	0	0	0.027455	1	11671	11671		42.396	3.1433	1	879330			31557	6939	25957	25982	34830	34830					0.06946609757483202
LLDTWDQVF	9	Unmodified	_LLDTWDQVF_					0	0	0		nc|ENSG00000148180|P06396|GSN;ENST00000373806.1_2_9:124089055-124094878:+|nuORF;ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN;ENST00000373807.5_1_9:124074589-124093809:+|nuORF;CON__Q3SX14;nc|ENSG00000135407|O75366-2|AVIL;ENST00000549851.5_1_12:58191667-58209405:-|nuORF;ENSG00000135407|ENST00000549994|AVIL	nc|ENSG00000148180|P06396|GSN	nc|ENSG00000148180|P06396|GSN	MULTI-MSMS	OvCa99_classI_Rep5	1	568.785888671875	2	568.784764	1135.55498	0.8493	0.00048307	1.0927	0.00062153	1.942	0.0011046	568.7852914137449	152.43	1.2269	152.43	152.07	153.3	0					70	28	3	0	0	0	0.14855	2	17856	17836;17856		85.161	17.534	1	947670		+	31558	15081	25958	25983	34831;34832	34832					-0.0073798062219339045
LLDVPGRRL	9	Unmodified	_LLDVPGRRL_					0	0	0		AHDC1|p.M539Sfs*46|1|0.61|ENSG00000126705|chr1:27550500-27550500|A/-|frameshift_variant;ENSG00000126705|ENST00000673934|AHDC1	AHDC1|p.M539Sfs*46|1|0.61|ENSG00000126705|chr1:27550500-27550500|A/-|frameshift_variant	AHDC1|p.M539Sfs*46|1|0.61|ENSG00000126705|chr1:27550500-27550500|A/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.293212890625	2	519.824558	1037.63456	2.6361	0.0013703	-0.79863	-0.00041515	1.8375	0.00095516	519.8242243670239	88.586	0.33344	88.586	88.426	88.76	0					10	7	2	0	0	0	0.027433	1	9409	9409		60.972	7.6205	1	212630			31559	52	25959	25984	34833	34833					0.11725130842478393
LLDVPTAAV	9	Unmodified	_LLDVPTAAV_					0	0	0		ENSG00000216490|ENST00000407280|IFI30;IFI30|p.L66Tfs*5|1|0.21|ENSG00000216490|chr19:18175102-18175103|-/ACAT|frameshift_variant	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-MSMS	OvCa99_classI_Rep5	1	449.76702880859375	2	449.765843	897.517133	2.1203	0.00095363	-0.39091	-0.00017582	1.7294	0.00077781	449.7655209121216	116.93	0.68323	116.93	116.68	117.37	0					27	14	3	0	0	0	0.11171	1	13385	13385		94.006	33.712	1	721120			31560	9213	25960	25985	34834	34834					0.06427553182993506
LLDVPWPR	8	Unmodified	_LLDVPWPR_					0	0	0		nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A	nc|ENSG00000129493|Q86XA9-2|HEATR5A	nc|ENSG00000129493|Q86XA9-2|HEATR5A	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.7927551269531	2	498.287277	994.560001	-0.040305	-2.0084E-05	3.9763	0.0019813	3.936	0.0019613	498.29003555464936	32.916	0.58383	32.916	32.602	33.186	0					19	11	3	0	0	0	0.028476	1	1435	1435		29.15	11.785	1	38175			31561	3931	25961	25986	34835	34835					0.06250368031078324
LLDVTVGEPL	10	Unmodified	_LLDVTVGEPL_					0	0	0		tr|A0A553SFA2|A0A553SFA2_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08315PE=4SV=1	tr|A0A553SFA2|A0A553SFA2_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08315PE=4SV=1	tr|A0A553SFA2|A0A553SFA2_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08315PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3239135742188	2	528.30279	1054.59103	0.68567	0.00036224	-0.60911	-0.00032179	0.07656	4.0447E-05	528.3026828167966	158.35	0.549	158.35	157.96	158.51	0					16	11	2	0	0	0	0.026752	1	18519	18519		35.618	5.1146	1	84763			31562	33011	25962	25987	34836	34836					0.06591476554672226
LLDYEKPTL	9	Unmodified	_LLDYEKPTL_					0	0	0			REV__tr|A0A553SGX1|A0A553SGX1_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_11765PE=4SV=1	REV__tr|A0A553SGX1|A0A553SGX1_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_11765PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	546.302734375	2	546.30279	1090.59103	-0.2131	-0.00011642	-0.1086	-5.9327E-05	-0.3217	-0.00017574	546.3025770219067	114.62	1.3818	114.5	114.16	115.54	-0.11777					62	27	3	0	0	0	0.37135	1	10909	10909		54.776	3.5836	1	158540	+		31563	29747	25963	25988	34837	34837					0.04935476554669549
LLEACIYCL	9	Carbamidomethyl (C)	_LLEACIYC(Carbamidomethyl (C))L_	LLEAC(0.001)IYC(0.999)L		LLEAC(-30)IYC(30)L		0	1	0		ENST00000453932.1_1_7:76099481-76100288:-|nuORF	ENST00000453932.1_1_7:76099481-76100288:-|nuORF	ENST00000453932.1_1_7:76099481-76100288:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	549.2708129882812	2	549.272121	1096.52969	1.0984	0.00060331	-3.7854	-0.0020792	-2.6871	-0.0014759	549.2699883645993	138.72	0.96269	138.72	138.4	139.37	0					50	19	4	0	0	0	0.17908	1	16203	16203		79.939	19.645	2	513460			31564	12078	25964	25989	34838	34838	137				-0.0147149474064463
LLEARKSAN	9	Unmodified	_LLEARKSAN_					0	0	0			REV__ENSG00000076650|ENST00000170564|GPATCH1	REV__ENSG00000076650|ENST00000170564|GPATCH1	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2884826660156	2	501.290548	1000.56654	-1.4695	-0.00073667	1.3149	0.00065914	-0.15466	-7.7529E-05	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.67509	1	11153	11153		23.042	1.3402	1	97838	+		31565	16996	25965	25990	34839	34839					0.06628261191792717
LLEATKVTL	9	Unmodified	_LLEATKVTL_					0	0	0			REV__nc|ENSG00000072682|O15460|P4HA2	REV__nc|ENSG00000072682|O15460|P4HA2	MULTI-SECPEP	OvCa9_classI_Rep2	2	494.29443359375	2	494.307875	986.601197	1.6971	0.0008389	3.7698	0.0018634	5.4669	0.0027023	494.31179735567173	91.004	0.15901	89.768	89.689	89.848	-1.2355					4	2	2	0	0	0	0.027448	1	8062	8062		44.117	10.601	1	3516.8	+		31566	16919	25966	25991	34840	34840					0.10736084279892566
LLEATQILL	9	Unmodified	_LLEATQILL_					0	0	0			REV__ENST00000577267.1_1_17:56066615-56067144:-|nuORF	REV__ENST00000577267.1_1_17:56066615-56067144:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.3150329589844	2	507.3157	1012.61685	-1.2635	-0.00064101	0.79123	0.00040141	-0.4723	-0.0002396	507.31593965363254	118.1	1.9854	116.76	116.42	118.4	-1.3444					95	37	4	0	0	0	0.42676	1	11091	11091		49.442	5.3247	1	576430	+		31567	27790	25967	25992	34841	34841					0.11104370796954299
LLEAYGIDV	9	Unmodified	_LLEAYGIDV_					0	0	0		ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	ENSG00000257093|ENST00000536163|DENND11	MULTI-MSMS	OvCa99_classI_Rep5	1	496.7690124511719	2	496.768583	991.522613	-0.9372	-0.00046557	-2.1773	-0.0010816	-3.1144	-0.0015472	496.76735230133954	66.115	0.4678	66.115	65.904	66.372	0					24	11	3	0	0	0	0.24951	1	6115	6115		68.787	7.8149	1	1979600			31568	9469	25968	25993	34842	34842					0.026512319748121627
LLECIRKV	8	Unmodified	_LLECIRKV_					0	0	0			REV__ENSG00000009413|ENST00000368802|REV3L	REV__ENSG00000009413|ENST00000368802|REV3L	MULTI-MSMS	OvCa9_classI_Rep3	3	487.2918701171875	2	487.296788	972.579022	-3.3803	-0.0016472	-4.1977	-0.0020455	-7.578	-0.0036927	487.29467626542595	143.85	1.2856	142.86	142.44	143.72	-0.9903					55	25	3	0	0	0	0.7549	1	11972	11972		24.203	1.1603	1	83168	+		31569	16465	25969	25994	34843	34843					0.09163581330494708
LLEDRLCTP	9	Unmodified	_LLEDRLCTP_					0	0	0		nc|ENSG00000113494|P16471-9|PRLR	nc|ENSG00000113494|P16471-9|PRLR	nc|ENSG00000113494|P16471-9|PRLR	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.2778930664062	2	530.278792	1058.54303	-0.62604	-0.00033198	0.33177	0.00017593	-0.29428	-0.00015605	530.2788281945986	123.12	1.4855	121.76	121.11	122.59	-1.3666					60	29	3	0	0	0	0.51865	1	11625	11625		40.778	0	1	110560			31570	14967	25970	25995	34844	34844					0.016100793629675536
LLEELPDCV	9	Unmodified	_LLEELPDCV_					0	0	0			REV__tr|A0A553SHX1|A0A553SHX1_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_13775PE=4SV=1	REV__tr|A0A553SHX1|A0A553SHX1_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_13775PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	515.7589721679688	2	515.759901	1029.50525	0.89793	0.00046311	-0.2574	-0.00013276	0.64053	0.00033036	515.7596346022517	126.45	1.4315	126.22	125.75	127.18	-0.2359					75	28	3	0	0	0	0.46377	1	12348	12348		45.952	1.4209	1	408360	+		31571	29846	25971	25996	34845	34845					-0.008324316225071016
LLEEVFTSQE	10	Unmodified	_LLEEVFTSQE_					0	0	0		ENST00000527078.5_1_8:145582536-145582912:+|nuORF	ENST00000527078.5_1_8:145582536-145582912:+|nuORF	ENST00000527078.5_1_8:145582536-145582912:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.3258056640625	2	597.798069	1193.58158	1.8682	0.0011168	-3.587	-0.0021443	-1.7188	-0.0010275	598.297811388435	118.65	0.66135	118.65	118.34	119.01	0					18	13	2	0	0	0	0.026681	1	13646	13646		36.447	11.928	1	61136			31572	13226	25972	25997	34846	34846					-0.0074633652152442664
LLEEVPLKL	9	Unmodified	_LLEEVPLKL_					0	0	0			REV__ENST00000334146.7_2_17:1617148-1617241:-|nuORF	REV__ENST00000334146.7_2_17:1617148-1617241:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	527.3557739257812	2	527.33135	1052.64815	-1.5818	-0.00083411	4.0636	0.0021429	2.4818	0.0013087	527.3335818290236	84.836	0.39436	82.575	82.357	82.751	-2.261					13	7	2	0	0	0	0.027462	1	4937	4937		45.952	19.156	1	18386	+		31573	24559	25973	25998	34847	34847					0.12392943831036973
LLEGGKMLD	9	Unmodified	_LLEGGKMLD_					0	0	0			REV__ENSG00000072133|ENST00000262752|RPS6KA6	REV__ENSG00000072133|ENST00000262752|RPS6KA6	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.270751953125	2	488.26261	974.510668	2.0479	0.0009999	0.36839	0.00017987	2.4163	0.0011798	488.26224937675556	82.458	0.3001	82.458	82.222	82.522	0					8	6	2	0	0	0	0.027462	1	8510	8510		35.618	3.6634	1	90792	+		31574	16912	25974	25999	34848	34848					0.022392919599724337
LLEHNRSDN	9	Unmodified	_LLEHNRSDN_					0	0	0		nc|ENSG00000166006|Q96PR1-4|KCNC2	nc|ENSG00000166006|Q96PR1-4|KCNC2	nc|ENSG00000166006|Q96PR1-4|KCNC2	MULTI-MSMS	OvCa99_classI_Rep5	1	549.2702026367188	2	549.270344	1096.52613	1.0984	0.00060331	-0.5505	-0.00030237	0.54788	0.00030094	549.2699883645993	138.72	0.96269	138.72	138.4	139.37	0					50	19	4	0	0	0	0.16562	1	16183	16183		82.241	7.9855	1	513460			31575	15153	25975	26000	34849	34849					-0.018267051986185834
LLEIEDLQV	9	Unmodified	_LLEIEDLQV_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;UNC45A-IQGAP1|2|fusion;UNC45A-IQGAP1|1|fusion	ENSG00000140575|ENST00000268182|IQGAP1;UNC45A-IQGAP1|2|fusion	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.2991333007812	2	536.300247	1070.58594	-0.76065	-0.00040794	-1.6798	-0.00090085	-2.4404	-0.0013088	536.2994214477058	41.922	0.69324	41.922	41.462	42.156	0					35	15	3	0	0	0	0.19758	1	2650	2650		76.774	7.1465	1	1283300			31576	4862;36292	25976	26001	34850	34850					0.05347172692040658
LLEIPTSGKLY	11	Unmodified	_LLEIPTSGKLY_					0	0	0		tr|A0A7D6VSZ5|A0A7D6VSZ5_9CLOTAminoacidABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07145PE=4SV=1	tr|A0A7D6VSZ5|A0A7D6VSZ5_9CLOTAminoacidABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07145PE=4SV=1	tr|A0A7D6VSZ5|A0A7D6VSZ5_9CLOTAminoacidABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07145PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	411.236083984375	3	411.907823	1232.70164	0.69574	0.00028658	-2.5668	-0.0010573	-1.8711	-0.00077072	411.90661327334027	57.256	1.0193	53.911	53.628	54.647	-3.3449					47	19	4	0	0	0	0.025955	1	3681	3681		30.569	13.851	1	132330			31577	35070	25977	26002	34851	34851					0.0945969654289911
LLEKEQRRKEL	11	Unmodified	_LLEKEQRRKEL_					0	0	0			REV__ENSG00000135521|ENST00000367576|LTV1	REV__ENSG00000135521|ENST00000367576|LTV1	MULTI-MSMS	OvCa9_classI_Rep3	3	481.2828674316406	3	481.287697	1440.84126	-6.6786	-0.0032143	-1.9719	-0.00094904	-8.6505	-0.0041634	481.2868612614486	161.01	3.7232	159.65	158.49	162.21	-1.3523					206	77	3	0	0	0	0.72477	2	14004	13991;14004		18.531	5.0231	1	127690	+		31578	19296	25978	26003	34852;34853	34853					0.13847453880134708
LLEKHEDKS	9	Unmodified	_LLEKHEDKS_					0	0	0		ENSG00000123307|ENST00000242994|NEUROD4	ENSG00000123307|ENST00000242994|NEUROD4	ENSG00000123307|ENST00000242994|NEUROD4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.8152465820312	2	549.793121	1097.57169	-0.57703	-0.00031725	-2.2588	-0.0012419	-2.8358	-0.0015591	550.2930481386041	66.552	0.54022	63.062	62.902	63.442	-3.4902					17	10	2	0	0	0	0.027462	1	4881	4881		19.997	0.89325	1	78119			31579	3586	25979	26004	34854	34854					0.02680520263766084
LLEKKQALPP	10	Unmodified	_LLEKKQALPP_					0	0	0		nc|ENSG00000067606|Q05513-2|PRKCZ;ENST00000479263.5_1_1:2075906-2116445:+|nuORF;nc|ENSG00000067606|Q05513-3|PRKCZ;ENSG00000067606|ENST00000378567|PRKCZ;ENST00000505322.5_1_1:2100378-2116445:+|nuORF	nc|ENSG00000067606|Q05513-2|PRKCZ	nc|ENSG00000067606|Q05513-2|PRKCZ	MULTI-MSMS	OvCa9_classI_Rep2	2	568.8544921875	2	568.855524	1135.69649	-5.375	-0.0030576	2.0179	0.0011479	-3.3571	-0.0019097	568.8565433281535	160.72	1.3933	160.5	160.18	161.57	-0.22696					89	27	5	0	0	0	0.66721	1	16359	16359		34.173	6.2903	1	747650			31580	1378	25980	26005	34855	34855					0.1340743747093711
LLEKSYKN	8	Unmodified	_LLEKSYKN_					0	0	0		tr|A0A7D7A5T1|A0A7D7A5T1_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07410PE=4SV=1	tr|A0A7D7A5T1|A0A7D7A5T1_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07410PE=4SV=1	tr|A0A7D7A5T1|A0A7D7A5T1_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07410PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	497.7862854003906	2	497.782025	993.549496	0.41564	0.0002069	2.1262	0.0010584	2.5419	0.0012653	497.7831233106875	161.1	0.60214	161.1	160.71	161.31	0					13	11	2	0	0	0	0.68714	1	18892	18892		45.952	1.8352	1	14127			31581	36177	25981	26006	34856	34856					0.05246340585995313
LLEKVLLI	8	Unmodified	_LLEKVLLI_					0	0	0			REV__tr|A0A7D6ZJ76|A0A7D6ZJ76_9CLOTTyrosine-typerecombinase/integraseOS=ClostridiumintestinaleOX=36845GN=HZF06_10145PE=4SV=1	REV__tr|A0A7D6ZJ76|A0A7D6ZJ76_9CLOTTyrosine-typerecombinase/integraseOS=ClostridiumintestinaleOX=36845GN=HZF06_10145PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	470.82635498046875	2	470.825704	939.636855	0.66106	0.00031124	-0.10183	-4.7944E-05	0.55923	0.0002633	470.82550127095874	161.06	3.0909	161.06	159.47	162.56	0					174	61	3	0	0	0	0.27528	5	18834	18763;18834;18859;18931;19036		111.65	0	1	597670	+		31582	32080	25982	26007	34857;34858;34859;34860;34861	34858					0.16462166527560385
LLEKVLSEV	9	Unmodified	_LLEKVLSEV_					0	0	0		tr|A0A553SQY0|A0A553SQY0_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_07505PE=4SV=1;tr|A0A553SQD6|A0A553SQD6_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_07535PE=4SV=1	tr|A0A553SQY0|A0A553SQY0_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_07505PE=4SV=1	tr|A0A553SQY0|A0A553SQY0_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_07505PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.7974243164062	2	515.313158	1028.61176	-0.66025	-0.00034023	-1.6716	-0.00086141	-2.3319	-0.0012016	515.3125173517672	53.803	0.27885	53.803	53.651	53.929	0					10	6	2	0	0	0	0.027462	1	4288	4288		16.473	0	1	243060			31583	34149	25983	26008	34862	34862					0.098600669343341
LLELGLRLE	9	Unmodified	_LLELGLRLE_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	MULTI-MSMS	OvCa99_classI_Rep5	1	528.3283081054688	2	528.326599	1054.63865	1.8804	0.00099348	0.60895	0.00032173	2.4894	0.0013152	528.3268496576393	118.16	1.1212	118.16	117.88	119.01	0					66	23	4	0	0	0	0.062324	1	13532	13532		111.65	6.9017	1	2785800			31584	8514	25984	26009	34863	34863					0.11351175545519254
LLELISSFIPL	11	Unmodified	_LLELISSFIPL_					0	0	0		L1PB1_dup441|chr1:149223496-149224383:+|1.3737885701039012|0.2382426944183741|2.53|427.0|51|3|anti-sense;chr14:94062621-94065779|133|19.53|0.06|8.3|-|0|TE_info:L1PB1,L1PB1_dup11175,L1,LINE,donor,+,94065779,94071367|DDX24,None|41	L1PB1_dup441|chr1:149223496-149224383:+|1.3737885701039012|0.2382426944183741|2.53|427.0|51|3|anti-sense	L1PB1_dup441|chr1:149223496-149224383:+|1.3737885701039012|0.2382426944183741|2.53|427.0|51|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	622.3203735351562	2	622.878665	1243.74278	1.4308	0.00089119	1.7023	0.0010603	3.1331	0.0019515	623.3815595181528	135.59	0.27898	135.59	135.46	135.73	0					7	5	2	0	0	0	0.025746	1	15786	15786		25.574	4.7369	1	149770			31585	350	25985	26010	34864	34864					0.13065457582365525
LLELKEHDKI	10	Unmodified	_LLELKEHDKI_					0	0	0			REV__nc|ENSG00000115355|Q3V6T2-5|CCDC88A	REV__nc|ENSG00000115355|Q3V6T2-5|CCDC88A	MULTI-MSMS	OvCa99_classI_Rep5	1	413.2444152832031	3	413.243206	1236.70779	0.30701	0.00012687	0.74309	0.00030708	1.0501	0.00043395	413.2434616684679	40.224	1.0433	40.224	39.926	40.969	0					62	22	4	0	0	0	0.43433	1	2419	2419		63.534	18.512	1	2284300	+		31586	18238	25986	26011	34865	34865					0.09890214774395645
LLELLTKLL	9	Unmodified	_LLELLTKLL_					0	0	0		ENST00000254878.7_1_8:99115104-99118201:-|nuORF	ENST00000254878.7_1_8:99115104-99118201:-|nuORF	ENST00000254878.7_1_8:99115104-99118201:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.3141479492188	2	528.357368	1054.70018	-0.66991	-0.00035395	2.6599	0.0014054	1.99	0.0010514	528.3585461823583	74.33	0.34628	71.92	71.747	72.093	-2.4106					10	6	2	0	0	0	0.027462	1	3689	3689		18.324	0	1	11198			31587	9815	25987	26012	34866	34866					0.17502107244786203
LLELPFLE	8	Unmodified	_LLELPFLE_					0	0	0			REV__tr|A0A553SHT0|A0A553SHT0_NIACIVOCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_13615PE=4SV=1	REV__tr|A0A553SHT0|A0A553SHT0_NIACIVOCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_13615PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.3149108886719	2	487.283869	972.553185	-0.18512	-9.0205E-05	-3.554	-0.0017318	-3.7391	-0.001822	487.2819497090672	105.1	0.61461	105.1	104.79	105.4	0					33	13	3	0	0	0	0.028476	1	11762	11762		119.22	7.5729	1	751300	+		31588	29835	25988	26013	34867	34867					0.06581010359843731
LLELQLPAL	9	Unmodified	_LLELQLPAL_					0	0	0		ENST00000597330.1_1_19:58556424-58557021:+|nuORF	ENST00000597330.1_1_19:58556424-58557021:+|nuORF	ENST00000597330.1_1_19:58556424-58557021:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.3163757324219	2	505.318243	1008.62193	-2.4694	-0.0012478	2.2676	0.0011459	-0.20177	-0.00010196	505.3192445539878	148.54	0.54985	147.1	146.88	147.43	-1.435					17	10	2	0	0	0	0.67509	1	14633	14633		23.042	4.7181	1	17878			31589	14188	25989	26014	34868	34868					0.1179667465954708
LLELQLPAL	9	Unmodified	_LLELQLPAL_					0	0	0		ENST00000597330.1_1_19:58556424-58557021:+|nuORF	ENST00000597330.1_1_19:58556424-58557021:+|nuORF	ENST00000597330.1_1_19:58556424-58557021:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	505.318243	1008.62193	-4.4257	-0.0022364	4.288	0.0021668	-0.13771	-6.9586E-05	505.32036452122435	148.13	0.54636	147.18	146.9	147.45	-0.9512	0.040074	0.00057397	NaN	23.042	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18307			31590	14188	25989	26014							0.1179667465954708
LLELVSGPGVS	11	Unmodified	_LLELVSGPGVS_					0	0	0			REV__ENSG00000135722|ENST00000258200|FBXL8	REV__ENSG00000135722|ENST00000258200|FBXL8	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.8468017578125	2	535.808239	1069.60193	-1.0935	-0.0005859	-1.0253	-0.00054939	-2.1188	-0.0011353	535.8075470290426	45.768	0.75077	43.059	42.747	43.497	-2.7097					23	14	2	0	0	0	0.025496	1	2727	2727		32.812	0	1	86857	+		31591	19314	25990	26015	34869	34869					0.06990878928968414
LLEMANIDDC	10	Unmodified	_LLEMANIDDC_					0	0	0		ENST00000358465.6_1_1:114939922-114939988:-|nuORF	ENST00000358465.6_1_1:114939922-114939988:-|nuORF	ENST00000358465.6_1_1:114939922-114939988:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.307373046875	2	568.75175	1135.48895	-0.099529	-5.6607E-05	0.11152	6.3427E-05	0.011991	6.8199E-06	568.7516029675168	104.94	0.77969	104.94	104.58	105.36	0					31	17	2	0	0	0	0.026752	1	11759	11759		44.117	0	1	302610			31592	10736	25991	26016	34870	34870					-0.07337880850900547
LLENENVKN	9	Unmodified	_LLENENVKN_					0	0	0			REV__TRIP11|p.N1845Tfs*4|1|0.37|ENSG00000100815|chr14:91974669-91974669|G/-|frameshift_variant	REV__TRIP11|p.N1845Tfs*4|1|0.37|ENSG00000100815|chr14:91974669-91974669|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.2454223632812	2	536.785296	1071.55604	-0.59692	-0.00032042	-1.911	-0.0010258	-2.5079	-0.0013462	536.7842388532996	114.03	1.0366	113.91	113.42	114.45	-0.11777					44	20	3	0	0	0	0.027295	1	10821	10821		74.255	19.479	1	40088	+		31593	17454	25992	26017	34871	34871					0.023122337467157195
LLENHILLL	9	Unmodified	_LLENHILLL_					0	0	0			REV__HGSNAT|p.S306Pfs*70|1|0.05|ENSG00000165102|chr8:43178133-43178134|-/ATGCCCTTTATTTGTTTCTCTT|frameshift_variant	REV__HGSNAT|p.S306Pfs*70|1|0.05|ENSG00000165102|chr8:43178133-43178134|-/ATGCCCTTTATTTGTTTCTCTT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.3040161132812	2	539.336967	1076.65938	0.55545	0.00029957	0.21164	0.00011414	0.76709	0.00041372	539.3372432199586	160.87	0.34917	160.87	160.71	161.06	0					9	6	2	0	0	0	0.027462	1	18882	18882		30.504	0	1	26674	+		31594	21057	25993	26018	34872	34872					0.12411765925185136
LLEPEPVPLSK	11	Unmodified	_LLEPEPVPLSK_					0	0	0		nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000079156|Q9BZF3-5|OSBPL6;nc|ENSG00000079156|Q9BZF3-2|OSBPL6;nc|ENSG00000079156|Q9BZF3-4|OSBPL6;ENSG00000079156|ENST00000190611|OSBPL6;nc|ENSG00000079156|Q9BZF3-6|OSBPL6;OSBPL6|p.E654Vfs*11|1|0.05|ENSG00000079156|chr2:178384123-178384124|-/TCTCATACTCCTTAGAGGTTGA|frameshift_variant	nc|ENSG00000079156|Q9BZF3-3|OSBPL6	nc|ENSG00000079156|Q9BZF3-3|OSBPL6	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3505859375	2	611.358096	1220.70164	-1.5159	-0.00092675	-1.8316	-0.0011197	-3.3474	-0.0020465	611.3567832501896	147.85	3.7824	146.41	144.39	148.17	-1.4351					181	75	4	0	0	0	0.69455	1	14549	14549		31.53	4.8369	1	164640			31595	14896	25994	26019	34873	34873					0.10011696542892423
LLEPEPVPLSK	11	Unmodified	_LLEPEPVPLSK_					0	0	0		nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000079156|Q9BZF3-5|OSBPL6;nc|ENSG00000079156|Q9BZF3-2|OSBPL6;nc|ENSG00000079156|Q9BZF3-4|OSBPL6;ENSG00000079156|ENST00000190611|OSBPL6;nc|ENSG00000079156|Q9BZF3-6|OSBPL6;OSBPL6|p.E654Vfs*11|1|0.05|ENSG00000079156|chr2:178384123-178384124|-/TCTCATACTCCTTAGAGGTTGA|frameshift_variant	nc|ENSG00000079156|Q9BZF3-3|OSBPL6	nc|ENSG00000079156|Q9BZF3-3|OSBPL6	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3555297851562	2	611.358096	1220.70164	-2.725	-0.001666	-0.73961	-0.00045217	-3.4646	-0.0021181	611.3575283211214	150.83	4.6872	149.39	148.02	152.71	-1.4344					404	109	6	0	0	0	0.72479	1	15059	15059		18.262	1.7889	1	435030			31596	14896	25994	26019	34874	34874					0.10011696542892423
LLEQEEPSL	9	Unmodified	_LLEQEEPSL_					0	0	0			REV__ENSG00000139352|ENST00000266744|ASCL1	REV__ENSG00000139352|ENST00000266744|ASCL1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.2750244140625	2	529.274229	1056.53391	1.1861	0.00062778	-1.3041	-0.00069025	-0.11803	-6.2468E-05	529.2733395559802	138.71	0.77002	138.71	138.45	139.22	0					32	15	3	0	0	0	0.31747	1	16188	16188		60.972	0	1	230900	+		31597	19606	25995	26020	34875	34875					0.007900092782847423
LLEQSPLGQV	10	Unmodified	_LLEQSPLGQV_					0	0	0			REV__ZNF142|p.S904Tfs*73|1|0.05|ENSG00000115568|chr2:218643805-218643806|GA/-|frameshift_variant	REV__ZNF142|p.S904Tfs*73|1|0.05|ENSG00000115568|chr2:218643805-218643806|GA/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.8258056640625	2	542.305864	1082.59717	-0.2263	-0.00012272	-2.2617	-0.0012265	-2.488	-0.0013493	542.3046098346751	23.052	0.34067	23.052	22.854	23.195	0					9	6	2	0	0	0	0.027118	1	296	296		25.574	0	1	28095	+		31598	18255	25996	26021	34876	34876					0.05917994786182135
LLEQYEHIEV	10	Unmodified	_LLEQYEHIEV_					0	0	0			REV__tr|A0A553SGH9|A0A553SGH9_NIACIGTP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10910PE=4SV=1	REV__tr|A0A553SGH9|A0A553SGH9_NIACIGTP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10910PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	424.2030334472656	3	424.887199	1271.63977	0.1037	4.4061E-05	3.6719	0.0015601	3.7756	0.0016042	424.8885860973049	51.395	0.58291	51.395	51.164	51.747	0					32	13	4	0	0	0	0.027006	1	3978	3978		37.508	2.0125	1	1074400	+		31599	29701	25997	26022	34877	34877					0.014813451237387198
LLERNGPAI	9	Unmodified	_LLERNGPAI_					0	0	0			REV__ENSG00000174306|ENST00000683867|ZHX3	REV__ENSG00000174306|ENST00000683867|ZHX3	MULTI-MSMS	OvCa9_classI_Rep3	3	491.7877502441406	2	491.787641	981.56073	-0.45797	-0.00022522	-0.31578	-0.0001553	-0.77375	-0.00038052	491.78761153947676	73.69	1.436	71.203	70.432	71.868	-2.4873					89	28	5	0	0	0	0.22961	1	3597	3597		71.296	7.9894	1	713280	+		31600	21824	25998	26023	34878	34878					0.06921162680123416
LLERSGFRR	9	Unmodified	_LLERSGFRR_					0	0	0			REV__ENSG00000225614|ENST00000565624|ZNF469	REV__ENSG00000225614|ENST00000565624|ZNF469	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3297119140625	2	567.330539	1132.64652	-2.6412	-0.0014984	1.1543	0.0006549	-1.4869	-0.00084354	567.3310908608092	141.92	3.9983	140.91	138.91	142.91	-1.0106					224	80	5	0	0	0	0.68424	1	11733	11733		21.96	1.9631	1	127690	+		31601	23364	25999	26024	34879	34879					0.0855074758567298
LLESFITNM	9	Unmodified	_LLESFITNM_					0	0	0		tr|A0A7D6VUJ3|A0A7D6VUJ3_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_22630PE=4SV=1	tr|A0A7D6VUJ3|A0A7D6VUJ3_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_22630PE=4SV=1	tr|A0A7D6VUJ3|A0A7D6VUJ3_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_22630PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	534.2769775390625	2	534.275718	1066.53688	0.71548	0.00038226	2.2294	0.0011911	2.9448	0.0015734	534.2767564165698	159.45	0.57259	159.45	159.19	159.76	0					17	11	2	0	0	0	0.48324	1	18689	18689		44.117	3.5442	1	71075			31602	35188	26000	26025	34880	34880					0.006275611314549678
LLESLDAMR	9	Unmodified	_LLESLDAMR_					0	0	0			REV__ENSG00000103415|ENST00000570646|HMOX2	REV__ENSG00000103415|ENST00000570646|HMOX2	MULTI-MSMS	OvCa9_classI_Rep3	3	524.278076171875	2	524.278792	1046.54303	1.2201	0.00063968	-1.4168	-0.00074281	-0.1967	-0.00010313	524.2778574863617	62.52	2.1768	59.486	58.872	61.049	-3.0339					76	45	2	0	0	0	0.68424	1	2393	2393		21.96	0	1	81064	+		31603	17616	26001	26026	34881	34881					0.02162079362960867
LLETLSMLPL	10	Unmodified	_LLETLSMLPL_					0	0	0			REV__nc|ENSG00000183826|Q96Q07-3|BTBD9	REV__nc|ENSG00000183826|Q96Q07-3|BTBD9	MULTI-SECPEP	OvCa9_classI_Rep2	2	564.8101196289062	2	565.330493	1128.64643	-0.0068288	-3.8605E-06	2.3691	0.0013393	2.3623	0.0013355	565.3316371689951	106.72	1.1402	106.42	106.03	107.17	-0.30836					37	15	3	0	0	0	0.027117	1	9996	9996		23.042	0	1	127920	+		31604	22388	26002	26027	34882	34882					0.08725566750786129
LLETNITIN	9	Unmodified	_LLETNITIN_					0	0	0			REV__tr|A0A7D6ZVZ8|A0A7D6ZVZ8_9CLOTFlagellarhook-associatedprotein1OS=ClostridiumintestinaleOX=36845GN=flgKPE=3SV=1	REV__tr|A0A7D6ZVZ8|A0A7D6ZVZ8_9CLOTFlagellarhook-associatedprotein1OS=ClostridiumintestinaleOX=36845GN=flgKPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.793212890625	2	515.792589	1029.57063	-0.27379	-0.00014122	0.021588	1.1135E-05	-0.2522	-0.00013008	515.7924868825856	121.83	1.5653	120.48	120.21	121.77	-1.3479					77	30	4	0	0	0	0.27001	1	11511	11511		66.429	0	1	178230	+		31605	32268	26003	26028	34883	34883					0.057023058948516336
LLEVLRCPP	9	Unmodified	_LLEVLRCPP_					0	0	0			REV__nc|ENSG00000176124|O43261|DLEU1	REV__nc|ENSG00000176124|O43261|DLEU1	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.7797241210938	2	520.30207	1038.58959	1.3639	0.00070964	-3.9516	-0.002056	-2.5877	-0.0013464	520.2999806875695	113.13	0.79671	112.05	111.71	112.51	-1.0753					21	15	2	0	0	0	0.027462	1	8321	8321		37.159	1.5408	1	20717	+		31606	29019	26004	26029	34884	34884					0.07183563984926877
LLEWILGM	8	Unmodified	_LLEWILGM_					0	0	0			REV__nc|ENSG00000001626|P13569-2|CFTR	REV__nc|ENSG00000001626|P13569-2|CFTR	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.95855712890625	2	487.772614	973.530675	-7.2523	-0.0035375	-1.1296	-0.000551	-8.3819	-0.0040885	487.7721109283727	161	0.51073	159.65	159.4	159.91	-1.3492					16	9	2	0	0	0	0.028476	1	13973	13973		37.028	15.326	1	15211	+		31607	16362	26005	26030	34885	34885					0.042850876905845325
LLEWKTVT	8	Unmodified	_LLEWKTVT_					0	0	0		ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	MULTI-MSMS	OvCa9_classI_Rep2	2	495.2848205566406	2	495.286943	988.559333	0.20595	0.00010201	-0.30592	-0.00015152	-0.099963	-4.951E-05	495.28664794488304	106.83	1.5678	106.52	106.13	107.69	-0.30836					90	31	4	0	0	0	0.45246	1	9990	9990		82.305	4.9875	1	400820			31608	7477	26006	26031	34886	34886					0.0645952859136969
LLFARLIL	8	Unmodified	_LLFARLIL_					0	0	0			REV__ENSG00000125863|ENST00000347364|MKKS	REV__ENSG00000125863|ENST00000347364|MKKS	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.8067932128906	2	479.826038	957.637523	-0.33792	-0.00016214	1.5256	0.00073201	1.1877	0.00056987	479.82695046750007	56.057	0.30333	52.762	52.567	52.87	-3.2944					7	5	2	0	0	0	0.028476	1	3571	3571		14.664	0	1	8057	+		31609	18752	26007	26032	34887	34887					0.15701005967275705
LLFAYHFEL	9	Unmodified	_LLFAYHFEL_					0	0	0			REV__ENST00000260327.8_1_15:44816782-44816941:+|nuORF	REV__ENST00000260327.8_1_15:44816782-44816941:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	576.808837890625	2	576.808042	1151.60153	0.61881	0.00035694	0.61442	0.0003544	1.2332	0.00071134	577.3096322919096	131.83	1.4103	131.83	131.43	132.84	0					66	29	3	0	0	0	0.42057	1	15335	15335		50.025	0.58299	1	466700	+		31610	23923	26008	26033	34888	34888					0.03179503999740518
LLFAYVLL	8	Unmodified	_LLFAYVLL_					0	0	0		ENSG00000144481|ENST00000324695|TRPM8	ENSG00000144481|ENST00000324695|TRPM8	ENSG00000144481|ENST00000324695|TRPM8	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.81317138671875	2	476.299322	950.584091	3.1067	0.0014797	2.0293	0.00096657	5.136	0.0024463	476.3004604943812	89.642	0.20639	89.642	89.516	89.722	0					6	4	2	0	0	0	0.028476	1	9578	9578		43.626	0	1	51957			31611	5153	26009	26034	34889	34889					0.10682208464754694
LLFCCMILF	9	Unmodified	_LLFCCMILF_					0	0	0		ENSG00000153283|ENST00000352690|CD96;nc|ENSG00000153283|P40200|CD96	ENSG00000153283|ENST00000352690|CD96	ENSG00000153283|ENST00000352690|CD96	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.8165283203125	2	551.778527	1101.5425	-0.20456	-0.00011287	1.7681	0.00097561	1.5636	0.00086274	552.2788404996618	105.12	0.73966	105.12	104.62	105.36	0					37	16	4	0	0	0	0.027462	1	11750	11750		39.021	11.139	1	335410			31612	5674	26010	26035	34890	34890					-0.004207548820886586
LLFCGGRQL	9	Unmodified	_LLFCGGRQL_					0	0	0			REV__NRXN1|p.T759Kfs*14|1|0.21|ENSG00000179915|chr2:50531298-50531299|-/AACAGCTCTTGATCTAGATAACAAAGCAGAAATT|frameshift_variant	REV__NRXN1|p.T759Kfs*14|1|0.21|ENSG00000179915|chr2:50531298-50531299|-/AACAGCTCTTGATCTAGATAACAAAGCAGAAATT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.778076171875	2	503.778762	1005.54297	-0.53642	-0.00027024	0.5837	0.00029406	0.047282	2.382E-05	503.7788775374196	22.106	2.3664	20.768	19.646	22.013	-1.3386					123	57	3	0	0	0	0.64339	1	301	301		26.796	0	1	168480	+		31613	22146	26011	26036	34891	34891					0.040421241536364505
LLFDFLAFK	9	Unmodified	_LLFDFLAFK_					0	0	0		ENSG00000049656|ENST00000320895|CLPTM1L;nc|ENSG00000049656|Q96KA5-2|CLPTM1L	ENSG00000049656|ENST00000320895|CLPTM1L	ENSG00000049656|ENST00000320895|CLPTM1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.3132934570312	2	557.320786	1112.62702	2.0077	0.001119	-4.2522	-0.0023698	-2.2445	-0.0012509	557.3182888900194	113.72	1.0157	113.72	113.5	114.51	0					70	22	5	0	0	0	0.02741	1	12950	12950		82.305	5.4584	1	7308800			31614	1172	26012	26037	34892	34892					0.07520978522165933
LLFDQSVPQDL	11	Unmodified	_LLFDQSVPQDL_					0	0	0			REV__FAM193A|p.T577Cfs*75|1|0.32|ENSG00000125386|chr4:2690768-2690769|-/TGTGCAGGCTGTTGCACTGCGCC|frameshift_variant	REV__FAM193A|p.T577Cfs*75|1|0.32|ENSG00000125386|chr4:2690768-2690769|-/TGTGCAGGCTGTTGCACTGCGCC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	637.83740234375	2	637.834985	1273.65542	1.5625	0.00099659	0.20291	0.00012943	1.7654	0.001126	637.835077784594	143.74	2.5604	143.74	143.27	145.83	0					129	52	6	0	0	0	0.26821	1	16849	16849		70.816	7.2824	1	4616100	+		31615	18722	26013	26038	34893	34893					0.02953631640821186
LLFDSVIHL	9	Unmodified	_LLFDSVIHL_					0	0	0		PLA2G12A|p.C168Lfs*2|1|0.1|ENSG00000123739|chr4:109714446-109714447|-/G|frameshift_variant;ENSG00000123739|ENST00000243501|PLA2G12A	PLA2G12A|p.C168Lfs*2|1|0.1|ENSG00000123739|chr4:109714446-109714447|-/G|frameshift_variant	PLA2G12A|p.C168Lfs*2|1|0.1|ENSG00000123739|chr4:109714446-109714447|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	528.8082885742188	2	528.808042	1055.60153	-3.2271	-0.0017065	2.8255	0.0014942	-0.40162	-0.00021238	528.8095043455028	144.1	1.2865	143.11	142.78	144.07	-0.99028					48	25	3	0	0	0	0.25214	2	12013	12007;12013		68.485	7.7867	1	57081			31616	3613	26014	26039	34894;34895	34895					0.07595503999755238
LLFDSVIHL	9	Unmodified	_LLFDSVIHL_					0	0	0		PLA2G12A|p.C168Lfs*2|1|0.1|ENSG00000123739|chr4:109714446-109714447|-/G|frameshift_variant;ENSG00000123739|ENST00000243501|PLA2G12A	PLA2G12A|p.C168Lfs*2|1|0.1|ENSG00000123739|chr4:109714446-109714447|-/G|frameshift_variant	PLA2G12A|p.C168Lfs*2|1|0.1|ENSG00000123739|chr4:109714446-109714447|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.80810546875	2	528.808042	1055.60153	-1.3853	-0.00073257	1.1675	0.00061739	-0.21781	-0.00011518	528.8085032032806	144.49	1.3563	143.05	142.58	143.94	-1.4357					48	25	3	0	0	0	0.21395	1	14158	14158		73.975	13.571	1	88342			31617	3613	26014	26039	34896	34896					0.07595503999755238
LLFDYARVP	9	Unmodified	_LLFDYARVP_					0	0	0			REV__ENST00000269347.10_1_17:80654676-80656523:-|nuORF	REV__ENST00000269347.10_1_17:80654676-80656523:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.325439453125	2	547.305667	1092.59678	-1.8626	-0.0010194	2.8664	0.0015688	1.0038	0.00054939	547.3069091965141	125.13	0.26282	123.74	123.65	123.91	-1.3908					9	4	3	0	0	0	0.027462	1	11894	11894		44.117	8.4985	1	9277	+		31618	19745	26015	26040	34897	34897					0.05418619856982332
LLFEKSFGH	9	Unmodified	_LLFEKSFGH_					0	0	0			REV__tr|A0A7D6W2E1|A0A7D6W2E1_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05930PE=3SV=1	REV__tr|A0A7D6W2E1|A0A7D6W2E1_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05930PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	538.8079223632812	2	539.290017	1076.56548	-0.37968	-0.00020476	-2.6191	-0.0014125	-2.9988	-0.0016172	539.288628259842	124.35	0.93696	124.11	123.78	124.72	-0.23193					21	18	2	0	0	0	0.027462	1	12132	12132		24.203	0	1	18588	+		31619	31896	26016	26041	34898	34898					0.030260468229016624
LLFELVSVR	9	Unmodified	_LLFELVSVR_					0	0	0			REV__ENSG00000134247|ENST00000393203|PTGFRN	REV__ENSG00000134247|ENST00000393203|PTGFRN	MULTI-MSMS	OvCa9_classI_Rep2	2	538.326416015625	2	538.329142	1074.64373	-5.5921	-0.0030104	1.7538	0.0009441	-3.8384	-0.0020663	538.3299819955096	158.56	1.0599	158.33	158.09	159.15	-0.22697					66	21	5	0	0	0	0.59983	1	16131	16131		31.955	1.4512	1	327100	+		31620	19186	26017	26042	34899	34899					0.10939479408125408
LLFENMTTV	9	Unmodified	_LLFENMTTV_					0	0	0			REV__ENSG00000112462|ENST00000396806|OR12D3	REV__ENSG00000112462|ENST00000396806|OR12D3	MULTI-MSMS	OvCa99_classI_Rep5	1	534.2782592773438	2	534.275718	1066.53688	-0.58283	-0.00031139	3.8486	0.0020562	3.2657	0.0017448	534.2777020109928	52.112	0.60732	52.112	51.871	52.478	0					33	13	5	0	0	0	0.16524	1	4062	4062		82.305	2.5924	1	2620500	+		31621	18102	26018	26043	34900	34900					0.006275611314322305
LLFENMTTV	9	Unmodified	_LLFENMTTV_					0	0	0			REV__ENSG00000112462|ENST00000396806|OR12D3	REV__ENSG00000112462|ENST00000396806|OR12D3	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	534.275718	1066.53688	-0.58283	-0.00031139	3.8486	0.0020562	3.2657	0.0017448	534.2777020109928	52.112	0.60732	52.112	51.871	52.478	0	0	0	NaN	82.305	33	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2620500	+		31622	18102	26018	26043							0.006275611314322305
LLFEYIPGLI	10	Unmodified	_LLFEYIPGLI_					0	0	0			REV__tr|A0A553SUP6|A0A553SUP6_NIACIFattyaciddesaturaseOS=NialliacirculansOX=1397GN=CEQ21_04985PE=4SV=1	REV__tr|A0A553SUP6|A0A553SUP6_NIACIFattyaciddesaturaseOS=NialliacirculansOX=1397GN=CEQ21_04985PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3421020507812	2	589.347	1176.67945	-3.0463	-0.0017953	-3.7941	-0.002236	-6.8404	-0.0040314	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.80532	1	14811	14811		18.324	0.95945	1	272220	+		31623	31105	26019	26044	34901	34901					0.09817516865132347
LLFFAILMF	9	Unmodified	_LLFFAILMF_					0	0	0		nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B;CACNA1B|p.Y1583Tfs*63|1|0.07|ENSG00000148408|chr9:138073559-138073559|C/-|frameshift_variant;ENST00000533229.1_1_1:181452799-181620578:+|nuORF;nc|ENSG00000198216|Q15878-2|CACNA1E;nc|ENSG00000198216|Q15878-3|CACNA1E;ENSG00000198216|ENST00000367573|CACNA1E	nc|ENSG00000148408|Q00975-2|CACNA1B;nc|ENSG00000198216|Q15878-2|CACNA1E	nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-MSMS	OvCa99_classI_Rep5	1	557.8211059570312	2	557.822107	1113.62966	1.3816	0.00077066	-3.1815	-0.0017747	-1.8	-0.0010041	557.82021995191	156.23	2.2146	156.23	155.84	158.05	0					83	43	3	0	0	0	0.22187	1	18335	18335		72.62	14.809	1	227800			31624	8797;5410	26020	26045	34902	34902					0.07739110655484183
LLFFCLPM	8	Unmodified	_LLFFCLPM_					0	0	0		ENSG00000171596|ENST00000305141|NMUR1	ENSG00000171596|ENST00000305141|NMUR1	ENSG00000171596|ENST00000305141|NMUR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.2810363769531	2	492.258285	982.502017	2.1241	0.0010456	-4.175	-0.0020552	-2.0509	-0.0010096	492.25585228744865	95.107	0.29869	95.107	94.905	95.204	0					10	6	2	0	0	0	0.028476	1	10351	10351		24.504	0	1	90089			31625	7216	26021	26046	34903	34903					0.010066467897900111
LLFFCLPM	8	Unmodified	_LLFFCLPM_					0	0	0		ENSG00000171596|ENST00000305141|NMUR1	ENSG00000171596|ENST00000305141|NMUR1	ENSG00000171596|ENST00000305141|NMUR1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	492.258285	982.502017	0.57785	0.00028445	-6.0641	-0.0029851	-5.4863	-0.0027007	492.25537208219765	95.838	1.1904	94.81	94.022	95.212	-1.0281	-0.1486	-0.00025591	NaN	33.493	28	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21236			31626	7216	26021	26046							0.010066467897900111
LLFFFFFLKKK	11	Unmodified	_LLFFFFFLKKK_					0	0	0		ENST00000318522.9_1_2:42557683-42557836:+|nuORF	ENST00000318522.9_1_2:42557683-42557836:+|nuORF	ENST00000318522.9_1_2:42557683-42557836:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.32470703125	3	493.303848	1476.88972	-0.24377	-0.00012025	3.574	0.0017631	3.3303	0.0016428	493.30585577944964	79.029	0.34169	76.689	76.61	76.952	-2.3399					11	6	3	0	0	0	0.026344	1	4247	4247		14.086	0	1	42648			31627	10363	26022	26047	34904	34904					0.17034599257954142
LLFFFFSF	8	Unmodified	_LLFFFFSF_					0	0	0		FLAM_C_dup6810|chr5:88975542-88975709:+|1.3047764765099543|0.2918986023967205|2.16|429.0|10|3|anti-sense	FLAM_C_dup6810|chr5:88975542-88975709:+|1.3047764765099543|0.2918986023967205|2.16|429.0|10|3|anti-sense	FLAM_C_dup6810|chr5:88975542-88975709:+|1.3047764765099543|0.2918986023967205|2.16|429.0|10|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.2796630859375	2	534.283672	1066.55279	-1.0949	-0.00058498	-2.5864	-0.0013818	-3.6813	-0.0019668	534.2822439118145	128.07	1.1797	126.63	126.29	127.47	-1.4357					65	22	5	0	0	0	0.68312	1	12230	12230		46.766	2.2354	1	165810			31628	14333	26023	26048	34905	34905					0.02217635430656628
LLFFLAPPMM	10	2 Oxidation (M)	_LLFFLAPPM(Oxidation (M))M(Oxidation (M))_		LLFFLAPPM(1)M(1)		LLFFLAPPM(55)M(55)	0	0	2			REV__L1PA6_dup2267|chr6:2299837-2303022:+|1.5111882528479883|0.3006554191737456|2.33|429.0|145|2|anti-sense	REV__L1PA6_dup2267|chr6:2299837-2303022:+|1.5111882528479883|0.3006554191737456|2.33|429.0|145|2|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	606.3175048828125	2	606.313789	1210.61302	2.9498	0.0017885	-0.076895	-4.6622E-05	2.8729	0.0017419	606.3138443836906	97.184	0.77308	97.184	96.881	97.654	0					32	17	2	0	0	0	0.49566	1	10663	10663		54.765	18.318	1	1728600	+		31629	28519	26024	26049	34906	34906		626;627			0.016142417072387616
LLFFLAPPMM	10	2 Oxidation (M)	_LLFFLAPPM(Oxidation (M))M(Oxidation (M))_					0	0	2			REV__L1PA6_dup2267|chr6:2299837-2303022:+|1.5111882528479883|0.3006554191737456|2.33|429.0|145|2|anti-sense	REV__L1PA6_dup2267|chr6:2299837-2303022:+|1.5111882528479883|0.3006554191737456|2.33|429.0|145|2|anti-sense	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	606.313789	1210.61302	2.9498	0.0017885	-0.076895	-4.6622E-05	2.8729	0.0017419	606.3138443836906	97.184	0.77308	97.184	96.881	97.654	0	0	0	NaN	54.765	32	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1728600	+		31630	28519	26024	26049				626;627			0.016142417072387616
LLFGKLIML	9	Unmodified	_LLFGKLIML_					0	0	0			REV__ENST00000534336.1_1_11:65269794-65269908:+|nuORF	REV__ENST00000534336.1_1_11:65269794-65269908:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	524.338134765625	2	524.335381	1046.65621	0.86781	0.00045503	0.73614	0.00038598	1.604	0.00084101	524.3354339169371	144.98	1.1818	144.98	144.64	145.83	0					45	24	3	0	0	0	0.61208	1	16979	16979		30.504	0	1	65475	+		31631	27267	26025	26050	34907	34907					0.1347479954681603
LLFGLFNL	8	Unmodified	_LLFGLFNL_					0	0	0		tr|A0A7D7A3P8|A0A7D7A3P8_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00650PE=4SV=1	tr|A0A7D7A3P8|A0A7D7A3P8_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00650PE=4SV=1	tr|A0A7D7A3P8|A0A7D7A3P8_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00650PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	467.7895812988281	2	468.781296	935.54804	-0.068632	-3.2173E-05	-4.4857	-0.0021028	-4.5543	-0.002135	468.7790593122603	45.033	0.89843	42.323	42.099	42.998	-2.7097					28	17	2	0	0	0	0.028476	1	2611	2611		20.482	0	1	88012			31632	36124	26026	26051	34908	34908					0.07768751287892428
LLFHPPLIV	9	Unmodified	_LLFHPPLIV_					0	0	0		ENST00000490223.1_1_3:23958684-23958756:+|nuORF;ENST00000413699.5_1_3:23958684-23959420:+|nuORF	ENST00000490223.1_1_3:23958684-23958756:+|nuORF	ENST00000490223.1_1_3:23958684-23958756:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7588500976562	2	524.83132	1047.64809	-1.0395	-0.00054557	1.1592	0.0006084	0.1197	6.2823E-05	524.8313366018059	49.529	0.17687	49.529	49.373	49.55	0					5	3	2	0	0	0	0.027462	1	3684	3684		14.664	0	1	67184			31633	11567	26027	26052	34909	34909					0.1261698862169851
LLFIVQCE	8	Unmodified	_LLFIVQCE_					0	0	0			REV__ENST00000272433.6_1_2:73228703-73285715:-|nuORF	REV__ENST00000272433.6_1_2:73228703-73285715:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	482.7611083984375	2	482.762246	963.50994	1.3501	0.0006518	-2.3609	-0.0011398	-1.0108	-0.00048798	482.7608468738496	146.64	0.53891	146.64	146.38	146.91	0					26	10	3	0	0	0	0.56113	1	17152	17152		71.378	2.8932	1	147990	+		31634	24076	26028	26053	34910	34910					0.026724973109139682
LLFIVVTFSIL	11	Unmodified	_LLFIVVTFSIL_					0	0	0			REV__tr|A0A553SQW8|A0A553SQW8_NIACIReticulon-likeproteinOS=NialliacirculansOX=1397GN=CEQ21_07410PE=4SV=1	REV__tr|A0A553SQW8|A0A553SQW8_NIACIReticulon-likeproteinOS=NialliacirculansOX=1397GN=CEQ21_07410PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	422.26776123046875	3	422.268692	1263.78425	2.2786	0.00096219	-4.2629	-0.0018001	-1.9843	-0.0008379	422.2668671705824	62.31	0.69212	59.276	58.966	59.658	-3.0339					24	14	2	0	0	0	0.7246	1	2224	2224		20.837	3.6704	1	23125	+		31635	30668	26029	26054	34911	34911					0.16290638341706654
LLFIYHYANG	10	Unmodified	_LLFIYHYANG_					0	0	0		tr|A0A553SQC3|A0A553SQC3_NIACITrkHfamilypotassiumuptakeproteinOS=NialliacirculansOX=1397GN=CEQ21_26435PE=4SV=1	tr|A0A553SQC3|A0A553SQC3_NIACITrkHfamilypotassiumuptakeproteinOS=NialliacirculansOX=1397GN=CEQ21_26435PE=4SV=1	tr|A0A553SQC3|A0A553SQC3_NIACITrkHfamilypotassiumuptakeproteinOS=NialliacirculansOX=1397GN=CEQ21_26435PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	605.8151245117188	2	605.816399	1209.61824	0.98318	0.00059562	-2.1072	-0.0012766	-1.124	-0.00068095	605.8149294907378	152.12	3.19	152.12	151.74	154.93	0					156	68	3	0	0	0	0.35697	1	17934	17934		73.975	7.5455	1	906760			31636	34146	26030	26055	34912	34912					0.02182004885708011
LLFKLKETTI	10	Unmodified	_LLFKLKETTI_					0	0	0		ENST00000508483.1_1_4:175237641-175237719:+|nuORF	ENST00000508483.1_1_4:175237641-175237719:+|nuORF	ENST00000508483.1_1_4:175237641-175237719:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	402.58758544921875	3	402.588313	1204.74311	1.9558	0.00078737	-4.1009	-0.001651	-2.1452	-0.00086362	402.5866179428177	67.03	2.5083	64.142	63.83	66.339	-2.8873					141	49	4	0	0	0	0.58067	1	2795	2795		44.377	2.9506	1	637180			31637	12945	26031	26056	34913	34913					0.1489287730223623
LLFKNRSCRI	10	Unmodified	_LLFKNRSCRI_					0	0	0		ENSG00000112462|ENST00000396806|OR12D3	ENSG00000112462|ENST00000396806|OR12D3	ENSG00000112462|ENST00000396806|OR12D3	MULTI-SECPEP	OvCa99_classI_Rep5	1	417.2009582519531	3	417.244775	1248.7125	0.19956	8.3264E-05	-2.9695	-0.001239	-2.7699	-0.0011557	417.2433671291669	52.184	2.6079	52.184	51.207	53.815	0					129	60	3	0	0	0	0.02698	1	4057	4057		41.08	10.511	1	321260			31638	2907	26032	26057	34914	34914					0.09808820436205679
LLFLDFFL	8	Unmodified	_LLFLDFFL_					0	0	0		ENST00000504797.1_1_12:54577600-54582666:-|nuORF;ENST00000504338.5_1_12:54577600-54582633:-|nuORF	ENST00000504797.1_1_12:54577600-54582666:-|nuORF	ENST00000504797.1_1_12:54577600-54582666:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.8256225585938	2	514.296779	1026.57901	2.4397	0.0012547	2.8076	0.0014439	5.2473	0.0026987	514.2981699004047	94.067	0.97688	94.067	93.799	94.776	0					41	22	3	0	0	0	0.028476	1	10243	10243		54.765	13.987	1	1735200			31639	12874	26033	26058	34915	34915					0.06677904602133822
LLFLFPEF	8	Unmodified	_LLFLFPEF_					0	0	0		HNF1B|p.D390Qfs*6|1|0.87|ENSG00000275410|chr17:37710531-37710541|TGGCCTGGGTC/-|frameshift_variant;nc|ENSG00000275410|P35680-3|HNF1B;HNF1B|p.L396Sfs*7|1|0.07|ENSG00000275410|chr17:37710523-37710523|G/-|frameshift_variant;ENSG00000275410|ENST00000617811|HNF1B	HNF1B|p.D390Qfs*6|1|0.87|ENSG00000275410|chr17:37710531-37710541|TGGCCTGGGTC/-|frameshift_variant	HNF1B|p.D390Qfs*6|1|0.87|ENSG00000275410|chr17:37710531-37710541|TGGCCTGGGTC/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.8385009765625	2	513.288954	1024.56336	1.3884	0.00071266	-2.6152	-0.0013424	-1.2268	-0.0006297	513.2871841676966	112	0.82523	112	111.7	112.52	0					38	17	3	0	0	0	0.028476	1	12712	12712		37.028	0	1	261100			31640	9571	26034	26059	34916	34916					0.05205618085074093
LLFLGSVRN	9	Unmodified	_LLFLGSVRN_					0	0	0			REV__HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|125|3|sense	REV__HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|125|3|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8034973144531	2	509.805834	1017.59712	-0.41042	-0.00020923	-3.6368	-0.0018541	-4.0473	-0.0020633	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.67509	1	13487	13487		23.042	1.0826	1	150140	+		31641	28237	26035	26060	34917	34917					0.08902039576844345
LLFLILVGLLI	11	Unmodified	_LLFLILVGLLI_					0	0	0		nc|ENSG00000080031|Q9HD43-3|PTPRH;nc|ENSG00000080031|Q9HD43-2|PTPRH;ENSG00000080031|ENST00000376350|PTPRH	nc|ENSG00000080031|Q9HD43-3|PTPRH	nc|ENSG00000080031|Q9HD43-3|PTPRH	MULTI-SECPEP	OvCa9_classI_Rep2	2	409.60772705078125	3	409.621066	1225.84137	0.42908	0.00017576	-1.9468	-0.00079744	-1.5177	-0.00062168	409.6201293648575	104.52	0.94057	103.94	103.42	104.36	-0.57639					23	18	2	0	0	0	0.025332	1	9633	9633		58.23	8.6939	1	22920			31642	1627	26036	26061	34918	34918					0.23748105618096815
LLFLPIELK	9	Unmodified	_LLFLPIELK_					0	0	0			REV__ENST00000396049.4_1_2:74382388-74382565:-|nuORF	REV__ENST00000396049.4_1_2:74382388-74382565:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.2901000976562	2	543.352086	1084.68962	0.15734	8.5491E-05	-3.3575	-0.0018243	-3.2002	-0.0017388	543.3502156517804	73.708	0.45978	73.708	73.56	74.02	0					25	11	3	0	0	0	0.027425	1	7244	7244		60.294	0	1	1512000	+		31643	25325	26037	26062	34919	34919					0.15066124590339314
LLFLYPLLP	9	Unmodified	_LLFLYPLLP_					0	0	0		ENST00000399799.2_1_18:18691173-18691332:-|nuORF	ENST00000399799.2_1_18:18691173-18691332:-|nuORF	ENST00000399799.2_1_18:18691173-18691332:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	545.8165283203125	2	544.841354	1087.66815	-1.4853	-0.00080924	-3.1108	-0.0016949	-4.5961	-0.0025042	544.8394237885014	120.28	0.78937	120.11	119.84	120.63	-0.17138					32	15	3	0	0	0	0.027462	1	11646	11646		29.842	15.177	1	50728			31644	11401	26038	26063	34920	34920					0.12782739561657763
LLFLYPLLP	9	Unmodified	_LLFLYPLLP_					0	0	0		ENST00000399799.2_1_18:18691173-18691332:-|nuORF	ENST00000399799.2_1_18:18691173-18691332:-|nuORF	ENST00000399799.2_1_18:18691173-18691332:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.8162841796875	2	544.841354	1087.66815	-0.6291	-0.00034276	-4.2861	-0.0023353	-4.9152	-0.002678	544.8389015566282	121.8	0.86719	120.45	120.16	121.03	-1.3479					36	16	3	0	0	0	0.027462	1	11479	11479		29.842	6.7991	1	54332			31645	11401	26038	26063	34921	34921					0.12782739561657763
LLFLYPLLP	9	Unmodified	_LLFLYPLLP_					0	0	0		ENST00000399799.2_1_18:18691173-18691332:-|nuORF	ENST00000399799.2_1_18:18691173-18691332:-|nuORF	ENST00000399799.2_1_18:18691173-18691332:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	544.841354	1087.66815	1.1555	0.00062959	-6.3504	-0.00346	-5.1948	-0.0028304	544.8377215273522	121.39	0.88976	120.36	120.12	121.01	-1.0271	0.1001	-0.0019682	NaN	29.842	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54051			31646	11401	26038	26063							0.12782739561657763
LLFNLPPGSV	10	Unmodified	_LLFNLPPGSV_					0	0	0		ENSG00000102243|ENST00000370634|VGLL1	ENSG00000102243|ENST00000370634|VGLL1	ENSG00000102243|ENST00000370634|VGLL1	MULTI-MSMS	OvCa9_classI_Rep2	2	528.808349609375	2	528.808042	1055.60153	-2.2617	-0.001196	2.3099	0.0012215	0.048298	2.5541E-05	528.8089774590135	143.19	0.88931	142.96	142.61	143.5	-0.22696					33	17	3	0	0	0	0.64697	1	14382	14382		36.447	2.9312	1	25849			31647	2232	26039	26064	34922	34922					0.07595503999755238
LLFNNRLVHL	10	Unmodified	_LLFNNRLVHL_					0	0	0		ENSG00000176020|ENST00000320431|AMIGO3	ENSG00000176020|ENST00000320431|AMIGO3	ENSG00000176020|ENST00000320431|AMIGO3	MULTI-SECPEP	OvCa9_classI_Rep3	3	413.2408142089844	3	413.583785	1237.72953	2.0737	0.00085767	-2.3634	-0.00097745	-0.28963	-0.00011979	413.5826497536208	64.89	0.45489	61.897	61.696	62.151	-2.9933					15	8	2	0	0	0	0.026867	1	2533	2533		35.152	14.315	1	9822.9			31648	7575	26040	26065	34923	34923					0.1201706431365892
LLFNSIKCMA	10	Unmodified	_LLFNSIKCMA_					0	0	0			REV__nc|ENSG00000174600|Q99788-2|CMKLR1	REV__nc|ENSG00000174600|Q99788-2|CMKLR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	570.2852172851562	2	570.301213	1138.58787	-0.55236	-0.00031501	2.202	0.0012558	1.6497	0.0009408	570.3023133526962	52.981	1.6691	49.773	49.451	51.12	-3.208					88	32	4	0	0	0	0.027117	1	3329	3329		23.042	1.0826	1	415650	+		31649	21842	26041	26066	34924	34924					0.02412186904666669
LLFNSIKCMA	10	Unmodified	_LLFNSIKCMA_					0	0	0			REV__nc|ENSG00000174600|Q99788-2|CMKLR1	REV__nc|ENSG00000174600|Q99788-2|CMKLR1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	570.301213	1138.58787	-1.7742	-0.0010118	3.1349	0.0017878	1.3607	0.00077601	570.3028291631848	52.598	1.6304	49.785	49.196	50.826	-2.8129	0.0059393	0.00051002	NaN	23.042	73	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181650	+		31650	21842	26041	26066							0.02412186904666669
LLFPESIRV	9	Unmodified	_LLFPESIRV_					0	0	0		TBC1D9B|p.G1112Vfs*34|1|0.27|ENSG00000197226|chr5:179863866-179863867|-/A|frameshift_variant;ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B	TBC1D9B|p.G1112Vfs*34|1|0.27|ENSG00000197226|chr5:179863866-179863867|-/A|frameshift_variant	TBC1D9B|p.G1112Vfs*34|1|0.27|ENSG00000197226|chr5:179863866-179863867|-/A|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	537.3228149414062	2	537.321317	1072.62808	2.1745	0.0011684	0.25467	0.00013684	2.4291	0.0013052	537.3213874407987	120.5	0.66223	120.5	120.3	120.97	0					23	15	2	0	0	0	0.1804	1	13839	13839		79.713	10.085	1	1701200			31651	8691	26042	26067	34925	34925					0.09467192891088416
LLFPESIRV	9	Unmodified	_LLFPESIRV_					0	0	0		TBC1D9B|p.G1112Vfs*34|1|0.27|ENSG00000197226|chr5:179863866-179863867|-/A|frameshift_variant;ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B	TBC1D9B|p.G1112Vfs*34|1|0.27|ENSG00000197226|chr5:179863866-179863867|-/A|frameshift_variant	TBC1D9B|p.G1112Vfs*34|1|0.27|ENSG00000197226|chr5:179863866-179863867|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	537.3225708007812	2	537.321317	1072.62808	-2.2978	-0.0012347	1.7096	0.00091859	-0.58822	-0.00031607	537.3220280625594	119.58	1.0849	119.41	119.2	120.29	-0.17137					58	21	4	0	0	0	0.10363	2	11520	11507;11520		96.19	5.4138	1	144740			31652	8691	26042	26067	34926;34927	34927					0.09467192891088416
LLFPESIRV	9	Unmodified	_LLFPESIRV_					0	0	0		TBC1D9B|p.G1112Vfs*34|1|0.27|ENSG00000197226|chr5:179863866-179863867|-/A|frameshift_variant;ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B	TBC1D9B|p.G1112Vfs*34|1|0.27|ENSG00000197226|chr5:179863866-179863867|-/A|frameshift_variant	TBC1D9B|p.G1112Vfs*34|1|0.27|ENSG00000197226|chr5:179863866-179863867|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	537.32177734375	2	537.321317	1072.62808	2.33	0.001252	-2.8245	-0.0015177	-0.49446	-0.00026569	537.3195552170786	120.42	1.1602	119.39	119.17	120.33	-1.0271					57	22	4	0	0	0	0.24951	1	9169	9169		68.787	5.4806	1	252420			31653	8691	26042	26067	34928	34928					0.09467192891088416
LLFPESIRV	9	Unmodified	_LLFPESIRV_					0	0	0		TBC1D9B|p.G1112Vfs*34|1|0.27|ENSG00000197226|chr5:179863866-179863867|-/A|frameshift_variant;ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B	TBC1D9B|p.G1112Vfs*34|1|0.27|ENSG00000197226|chr5:179863866-179863867|-/A|frameshift_variant	TBC1D9B|p.G1112Vfs*34|1|0.27|ENSG00000197226|chr5:179863866-179863867|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.3211669921875	2	537.321317	1072.62808	-1.6118	-0.00086606	1.2465	0.00066975	-0.36533	-0.0001963	537.3218163463066	120.7	1.3813	119.35	119.08	120.46	-1.3479					59	26	3	0	0	0	0.27001	1	11354	11354		66.429	2.8954	1	254890			31654	8691	26042	26067	34929	34929					0.09467192891088416
LLFPLFDPL	9	Unmodified	_LLFPLFDPL_					0	0	0			REV__nc|ENSG00000144712|O75155-2|CAND2	REV__nc|ENSG00000144712|O75155-2|CAND2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.2689208984375	2	537.815336	1073.61612	-1.2683	-0.00068212	2.8171	0.0015151	1.5488	0.00083295	537.8172148104321	63.051	0.81783	59.576	59.339	60.156	-3.475					25	16	2	0	0	0	0.027462	1	4421	4421		25.45	0	1	30349	+		31655	19928	26043	26068	34930	34930					0.0822557614787911
LLFPPAWLP	9	Unmodified	_LLFPPAWLP_					0	0	0			REV__ENST00000564587.5_1_15:75628430-75630983:+|nuORF	REV__ENST00000564587.5_1_15:75628430-75630983:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.3114624023438	2	527.310221	1052.60589	0.015559	8.2042E-06	3.021	0.001593	3.0365	0.0016012	527.3116773423632	33.079	1.7375	30.384	29.903	31.641	-2.6954					77	33	4	0	0	0	0.61768	1	831	831		29.842	1.9593	1	327680	+		31656	27668	26044	26069	34931	34931					0.08169013213318976
LLFQEQLY	8	Unmodified	_LLFQEQLY_					0	0	0		tr|A0A7D7A250|A0A7D7A250_9CLOTGlutathionylspermidinesynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18215PE=4SV=1	tr|A0A7D7A250|A0A7D7A250_9CLOTGlutathionylspermidinesynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18215PE=4SV=1	tr|A0A7D7A250|A0A7D7A250_9CLOTGlutathionylspermidinesynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18215PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.82861328125	2	527.2844	1052.55425	1.8274	0.00096355	-1.9263	-0.0010157	-0.098931	-5.2165E-05	527.2835200215094	102.89	0.33444	102.89	102.81	103.14	0					17	7	3	0	0	0	0.028476	1	11480	11480		51.335	0	1	734530			31657	36061	26045	26070	34932	34932					0.030072247287762366
LLFQEQLY	8	Unmodified	_LLFQEQLY_					0	0	0		tr|A0A7D7A250|A0A7D7A250_9CLOTGlutathionylspermidinesynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18215PE=4SV=1	tr|A0A7D7A250|A0A7D7A250_9CLOTGlutathionylspermidinesynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18215PE=4SV=1	tr|A0A7D7A250|A0A7D7A250_9CLOTGlutathionylspermidinesynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18215PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	527.2844	1052.55425	-0.17934	-9.4562E-05	-2.1653	-0.0011417	-2.3447	-0.0012363	527.2833105846523	104.36	1.0395	102.93	102.71	103.75	-1.4347	0.017784	-0.00012852	NaN	94.006	22	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35008			31658	36061	26045	26070							0.030072247287762366
LLFQFLFI	8	Unmodified	_LLFQFLFI_					0	0	0			REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|399|3|anti-sense	REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|399|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	521.3128051757812	2	520.812596	1039.61064	0.37393	0.00019475	-1.6667	-0.00086803	-1.2927	-0.00067328	520.8116311629591	153.38	1.4209	153.38	152.75	154.17	0					47	28	3	0	0	0	0.72134	1	17953	17953		39.021	0	1	377760	+		31659	28502	26046	26071	34933	34933					0.09241897356082518
LLFRCKLGVL	10	Unmodified	_LLFRCKLGVL_					0	0	0		nc|ENSG00000164168|Q9NVA4-2|TMEM184C;ENSG00000164168|ENST00000296582|TMEM184C	nc|ENSG00000164168|Q9NVA4-2|TMEM184C	nc|ENSG00000164168|Q9NVA4-2|TMEM184C	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.2810668945312	2	581.362462	1160.71037	-0.73601	-0.00042789	-2.9923	-0.0017396	-3.7283	-0.0021675	581.360244306128	40.591	0.85443	40.591	40.34	41.195	0					35	18	3	0	0	0	0.026752	1	2520	2520		20.947	3.4789	1	360210			31660	6423	26047	26072	34934	34934					0.13644391698403524
LLFRFLDKFLI	11	Unmodified	_LLFRFLDKFLI_					0	0	0			REV__nc|ENSG00000111199|Q9HBA0-6|TRPV4	REV__nc|ENSG00000111199|Q9HBA0-6|TRPV4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.60980224609375	3	475.626991	1423.85914	-0.32104	-0.00015269	-1.1335	-0.00053911	-1.4545	-0.0006918	475.62662402579974	81.425	0.29462	78.715	78.543	78.838	-2.7106					8	5	2	0	0	0	0.025911	1	6698	6698		25.126	7.9592	1	12904	+		31661	18020	26048	26073	34935	34935					0.16416820872927929
LLFRINRLD	9	Unmodified	_LLFRINRLD_					0	0	0		nc|ENSG00000064012|Q14790-3|CASP8;nc|ENSG00000064012|Q14790-2|CASP8;ENSG00000064012|ENST00000673742|CASP8;nc|ENSG00000064012|Q14790-4|CASP8;nc|ENSG00000064012|Q14790-9|CASP8;ENST00000471383.5_1_2:202131194-202137540:+|nuORF;nc|ENSG00000064012|Q14790-6|CASP8;nc|ENSG00000064012|Q14790-5|CASP8;nc|ENSG00000064012|Q14790-8|CASP8;nc|ENSG00000064012|Q14790-7|CASP8;ENST00000339403.6_1_2:202123080-202141717:+|nuORF	nc|ENSG00000064012|Q14790-3|CASP8	nc|ENSG00000064012|Q14790-3|CASP8	MULTI-MSMS	OvCa99_classI_Rep5	1	580.8535766601562	2	580.35094	1158.68733	-0.30749	-0.00017845	0.49445	0.00028695	0.18696	0.0001085	580.3511350500651	21.408	0.29499	21.408	21.287	21.582	0					15	9	2	0	0	0	0.7044	1	121	121		16.473	0	1	22696			31662	1291	26049	26074	34936	34936					0.11433088905278055
LLFRLGPPAR	10	Unmodified	_LLFRLGPPAR_					0	0	0			REV__ENST00000497639.5_1_10:69644980-69647288:+|nuORF	REV__ENST00000497639.5_1_10:69644980-69647288:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	570.7803344726562	2	570.356025	1138.6975	-0.070068	-3.9963E-05	2.8032	0.0015988	2.7332	0.0015589	570.3573550730962	92.294	1.1374	91.126	90.866	92.003	-1.168					39	21	3	0	0	0	0.026688	1	8257	8257		40.778	12.896	1	119860	+		31663	26781	26050	26075	34937	34937					0.13369696630502403
LLFRRMVELC	10	Unmodified	_LLFRRMVELC_					0	0	0			REV__nc|ENSG00000124275|Q9UBK8-1|MTRR	REV__nc|ENSG00000124275|Q9UBK8-1|MTRR	MULTI-MSMS	OvCa99_classI_Rep5	1	640.3590087890625	2	640.354311	1278.69407	0.017433	1.1163E-05	3.3524	0.0021467	3.3698	0.0021579	640.3562971517529	47.46	0.95204	47.46	47.208	48.16	0					55	21	4	0	0	0	0.69928	1	3432	3432		25.574	5.5436	1	1690200	+		31664	28831	26051	26076	34938	34938					0.06586942469994028
LLFRVPEV	8	Unmodified	_LLFRVPEV_					0	0	0			REV__nc|ENSG00000152061|Q5R372-2|RABGAP1L	REV__nc|ENSG00000152061|Q5R372-2|RABGAP1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.7779235839844	2	486.797478	971.580402	-0.88723	-0.0004319	-1.623	-0.00079006	-2.5102	-0.001222	486.7965692158296	64.314	0.62131	64.314	64.051	64.672	0					24	14	2	0	0	0	0.028476	1	5842	5842		97.473	18.022	1	868120	+		31665	28929	26052	26077	34939	34939					0.09347538690894908
LLFSHTFGFM	10	Oxidation (M)	_LLFSHTFGFM(Oxidation (M))_		LLFSHTFGFM(1)		LLFSHTFGFM(53)	0	0	1			REV__ENSG00000171936|ENST00000641646|OR10H3	REV__ENSG00000171936|ENST00000641646|OR10H3	MULTI-MSMS	OvCa9_classI_Rep4_	4	405.8679504394531	3	405.867082	1214.57942	1.411	0.00057269	-1.7283	-0.00070147	-0.31731	-0.00012878	405.86628926350875	58.935	2.4312	55.543	55.101	57.532	-3.392					123	48	4	0	0	0	0.50999	1	3928	3928		52.937	8.5595	1	992190	+		31666	21659	26053	26078	34940	34940		504			-0.019290437403242322
LLFSPEHSLF	10	Unmodified	_LLFSPEHSLF_					0	0	0		nc|ENSG00000174151|Q8N8Q1-5|CYB561D1;ENSG00000174151|ENST00000420578|CYB561D1;ENST00000430195.2_1_1:110037168-110038878:+|nuORF;nc|ENSG00000174151|Q8N8Q1-3|CYB561D1	nc|ENSG00000174151|Q8N8Q1-5|CYB561D1	nc|ENSG00000174151|Q8N8Q1-5|CYB561D1	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.7708740234375	2	595.316232	1188.61791	1.8465	0.0010993	3.9294	0.0023393	5.776	0.0034385	595.3180992730347	92.478	0.58815	92.478	92.174	92.762	0					29	13	3	0	0	0	0.02661	1	10014	10014		49.442	0	1	1065400			31667	7443	26054	26079	34941	34941					0.031145851658493484
LLFSPEHSLF	10	Unmodified	_LLFSPEHSLF_					0	0	0		nc|ENSG00000174151|Q8N8Q1-5|CYB561D1;ENSG00000174151|ENST00000420578|CYB561D1;ENST00000430195.2_1_1:110037168-110038878:+|nuORF;nc|ENSG00000174151|Q8N8Q1-3|CYB561D1	nc|ENSG00000174151|Q8N8Q1-5|CYB561D1	nc|ENSG00000174151|Q8N8Q1-5|CYB561D1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	595.316232	1188.61791	-0.6027	-0.0003588	8.5075	0.0050646	7.9048	0.0047058	595.3217698840344	93.613	0.36684	92.445	92.314	92.68	-1.1678	-0.016601	0.0043295	NaN	40.778	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44589			31668	7443	26054	26079							0.031145851658493484
LLFSSDSPAS	10	Unmodified	_LLFSSDSPAS_					0	0	0		chr3:42786162-42788622|418|29.01|0.0|21.47|-|2|TE_info:AluSx1,AluSx1_dup18965,Alu,SINE,donor,+,42788622,42788900|HIGD1A,None|2	chr3:42786162-42788622|418|29.01|0.0|21.47|-|2|TE_info:AluSx1,AluSx1_dup18965,Alu,SINE,donor,+,42788622,42788900|HIGD1A,None|2	chr3:42786162-42788622|418|29.01|0.0|21.47|-|2|TE_info:AluSx1,AluSx1_dup18965,Alu,SINE,donor,+,42788622,42788900|HIGD1A,None|2	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.2553100585938	2	512.253297	1022.49204	-0.66625	-0.00034129	0.61007	0.00031251	-0.056178	-2.8777E-05	512.253528475125	87.1	2.3549	84.473	83.957	86.312	-2.6269					166	46	5	0	0	0	0.64063	1	7398	7398		37.159	1.9584	1	2034900			31669	485	26055	26080	34942	34942					-0.018305464102354563
LLFTTMKIL	9	Unmodified	_LLFTTMKIL_					0	0	0			REV__nc|ENSG00000145734|A6H8Y1-8|BDP1	REV__nc|ENSG00000145734|A6H8Y1-8|BDP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3308715820312	2	540.330296	1078.64604	0.34656	0.00018726	-0.55993	-0.00030255	-0.21337	-0.00011529	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.51865	1	13734	13734		40.778	2.9666	1	342200	+		31670	28914	26056	26081	34943	34943					0.10986191821598368
LLFVAMVL	8	Unmodified	_LLFVAMVL_					0	0	0			REV__ENSG00000172215|ENST00000304552|CXCR6	REV__ENSG00000172215|ENST00000304552|CXCR6	MULTI-MSMS	OvCa9_classI_Rep4_	4	453.2833557128906	2	453.280075	904.545597	1.9545	0.00088593	2.9775	0.0013496	4.9319	0.0022355	453.2812566921443	85.615	1.8197	82.968	82.215	84.035	-2.6463					82	36	3	0	0	0	0.58426	1	7204	7204		67.327	0	1	327060	+		31671	21682	26057	26082	34944	34944					0.089505795585751
LLFVAMVL	8	Unmodified	_LLFVAMVL_					0	0	0			REV__ENSG00000172215|ENST00000304552|CXCR6	REV__ENSG00000172215|ENST00000304552|CXCR6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	453.280075	904.545597	0.64546	0.00029258	3.5646	0.0016158	4.2101	0.0019084	453.2815046366673	84.415	1.6701	82.869	82.223	83.893	-1.5462	-0.081781	-0.00071425	NaN	67.327	84	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240980	+		31672	21682	26057	26082							0.089505795585751
LLFVAMVL	8	Unmodified	_LLFVAMVL_					0	0	0			REV__ENSG00000172215|ENST00000304552|CXCR6	REV__ENSG00000172215|ENST00000304552|CXCR6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	453.280075	904.545597	-0.98733	-0.00044754	5.2582	0.0023835	4.2709	0.0019359	453.2823141065872	85.235	2.1345	83.014	82.202	84.337	-2.2204	0.063856	0.00082111	NaN	67.327	101	42	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	456950	+		31673	21682	26057	26082							0.089505795585751
LLFVAMVL	8	Unmodified	_LLFVAMVL_					0	0	0			REV__ENSG00000172215|ENST00000304552|CXCR6	REV__ENSG00000172215|ENST00000304552|CXCR6	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	453.280075	904.545597	1.9545	0.00088593	2.9775	0.0013496	4.9319	0.0022355	453.2812566921443	85.615	1.8197	82.968	82.215	84.035	-2.6463	0.017926	-0.0012466	NaN	67.327	82	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327060	+		31674	21682	26057	26082							0.089505795585751
LLFVDIIGSE	10	Unmodified	_LLFVDIIGSE_					0	0	0			REV__ENSG00000214013|ENST00000318010|GANC	REV__ENSG00000214013|ENST00000318010|GANC	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.7335815429688	2	553.310615	1104.60668	-0.54625	-0.00030224	0.23068	0.00012764	-0.31557	-0.00017461	553.3106363190367	35.263	0.7029	35.263	34.772	35.475	0					20	14	2	0	0	0	0.026956	1	1718	1718		19.997	0	1	32914	+		31675	23281	26058	26083	34945	34945					0.05855763071735964
LLFVGVILLKT	11	Unmodified	_LLFVGVILLKT_					0	0	0			REV__ENSG00000063127|ENST00000335875|SLC6A16	REV__ENSG00000063127|ENST00000335875|SLC6A16	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.931640625	3	405.940687	1214.80023	-0.001961	-7.9607E-07	2.9862	0.0012122	2.9842	0.0012114	406.2753197736864	43.717	0.21581	43.717	43.608	43.823	0					7	4	2	0	0	0	0.026364	1	2903	2903		9.2118	0	1	23899	+		31676	16757	26059	26084	34946	34946					0.20142344578607663
LLFVPLGPY	9	Unmodified	_LLFVPLGPY_					0	0	0			REV__nc|ENSG00000074416|Q99685-2|MGLL	REV__nc|ENSG00000074416|Q99685-2|MGLL	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8033142089844	2	509.802229	1017.5899	-0.41042	-0.00020923	3.4351	0.0017512	3.0247	0.001542	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.68641	1	13655	13655		21.702	1.2205	1	150140	+		31677	16950	26060	26085	34947	34947					0.08181306976428004
LLFVQITGK	9	Unmodified	_LLFVQITGK_					0	0	0		ENST00000566284.1_1_16:57467902-57474840:-|nuORF;nc|ENSG00000005194|Q6FI81-3|CIAPIN1;ENSG00000005194|ENST00000394391|CIAPIN1	ENST00000566284.1_1_16:57467902-57474840:-|nuORF	ENST00000566284.1_1_16:57467902-57474840:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8199157714844	2	509.81841	1017.62227	-0.38757	-0.00019759	-0.15651	-7.979E-05	-0.54408	-0.00027738	509.8183131283342	122.45	1.333	122.23	121.92	123.25	-0.21803					51	26	3	0	0	0	0.29717	1	11861	11861		63.306	2.3343	1	92943			31678	848	26061	26086	34948	34948					0.11416094379421793
LLFVTLANK	9	Unmodified	_LLFVTLANK_					0	0	0			REV__tr|A0A553SF80|A0A553SF80_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08380PE=3SV=1	REV__tr|A0A553SF80|A0A553SF80_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08380PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.82080078125	2	509.81841	1017.62227	-0.40336	-0.00020564	0.24299	0.00012388	-0.16037	-8.1758E-05	509.818396147904	123.54	1.1963	122.17	121.9	123.1	-1.3666					47	23	3	0	0	0	0.28934	1	11716	11716		64.207	0.901	1	110440	+		31679	29543	26062	26087	34949	34949					0.11416094379410424
LLFVVIKQL	9	Unmodified	_LLFVVIKQL_					0	0	0		ENSG00000164112|ENST00000643802|SMIM43	ENSG00000164112|ENST00000643802|SMIM43	ENSG00000164112|ENST00000643802|SMIM43	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.8168334960938	2	536.860078	1071.7056	-1.1177	-0.00060007	0.49776	0.00026723	-0.61999	-0.00033285	536.8602579894346	98.958	0.41373	96.632	96.433	96.847	-2.3253					10	7	2	0	0	0	0.027326	1	8796	8796		65.803	15.779	1	16284			31680	6411	26063	26088	34950	34950					0.17261830827260383
LLFVVIKQL	9	Unmodified	_LLFVVIKQL_					0	0	0		ENSG00000164112|ENST00000643802|SMIM43	ENSG00000164112|ENST00000643802|SMIM43	ENSG00000164112|ENST00000643802|SMIM43	MULTI-MATCH	OvCa9_classI_Rep2	2		2	536.860078	1071.7056	-0.76658	-0.00041155	-0.084834	-4.5544E-05	-0.85142	-0.00045709	536.8599733112904	97.317	0.59274	96.359	96.118	96.711	-0.95857	-0.19438	0.00025812	NaN	65.803	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11871			31681	6411	26063	26088							0.17261830827260383
LLFVVIKQL	9	Unmodified	_LLFVVIKQL_					0	0	0		ENSG00000164112|ENST00000643802|SMIM43	ENSG00000164112|ENST00000643802|SMIM43	ENSG00000164112|ENST00000643802|SMIM43	MULTI-MATCH	OvCa9_classI_Rep3	3		2	536.860078	1071.7056	0.85998	0.00046169	-1.2494	-0.00067075	-0.38941	-0.00020906	536.8593425716379	98.5	0.466	96.74	96.52	96.986	-1.7595	0.18723	-0.00099229	NaN	65.803	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16270			31682	6411	26063	26088							0.17261830827260383
LLFWLFTKLS	10	Unmodified	_LLFWLFTKLS_					0	0	0			REV__SUN2|p.P219S|1|0.09|ENSG00000100242|chr22:38748743-38748743|G/A|missense_variant	REV__SUN2|p.P219S|1|0.09|ENSG00000100242|chr22:38748743-38748743|G/A|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	634.378173828125	2	634.376092	1266.73763	0.70959	0.00045014	1.7008	0.001079	2.4104	0.0015291	634.3769097150116	164.24	2.8363	164.24	163	165.84	0					295	106	3	0	0	0	0.68695	2	19200	19113;19200		31.955	11.958	1	532610	+		31683	17385	26064	26089	34951;34952	34952					0.1149319851040218
LLFWPCPR	8	Unmodified	_LLFWPCPR_					0	0	0			REV__ENST00000456333.2_1_X:40597445-40597487:+|nuORF	REV__ENST00000456333.2_1_X:40597445-40597487:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.8245849609375	2	516.278398	1030.54224	1.5693	0.00081022	3.3339	0.0017212	4.9032	0.0025314	516.2803247998654	117.25	0.23421	117.25	117.13	117.37	0					6	4	2	0	0	0	0.028476	1	13436	13436		71.378	32.125	1	46609	+		31684	26028	26065	26090	34953	34953					0.028193295045639388
LLFWVALERRR	11	Unmodified	_LLFWVALERRR_					0	0	0		ENSG00000176435|ENST00000342213|CLEC14A	ENSG00000176435|ENST00000342213|CLEC14A	ENSG00000176435|ENST00000342213|CLEC14A	MULTI-MSMS	OvCa9_classI_Rep2	2	486.9589538574219	3	486.961256	1457.86194	-4.7825	-0.0023289	0.04792	2.3335E-05	-4.7346	-0.0023056	486.9610953135575	160.39	2.6298	160.16	159.25	161.88	-0.22696					128	53	4	0	0	0	0.72507	1	16427	16427		14.694	4.5898	1	96650			31685	7608	26066	26091	34954	34954					0.15132089050416653
LLFYRWRRRSH	11	Unmodified	_LLFYRWRRRSH_					0	0	0		nc|ENSG00000184371|P09603-2|CSF1;ENSG00000184371|ENST00000329608|CSF1;nc|ENSG00000184371|P09603-3|CSF1	nc|ENSG00000184371|P09603-2|CSF1	nc|ENSG00000184371|P09603-2|CSF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.2569580078125	3	530.635654	1588.88513	-0.049504	-2.6269E-05	-4.0192	-0.0021327	-4.0687	-0.002159	530.6335425199237	56.811	0.38123	56.811	56.623	57.004	0					12	8	2	0	0	0	0.026488	1	4741	4741		0.3405	0	1	281900			31686	8153	26067	26092	34955	34955					0.1142452788776609
LLGAAVPAE	9	Unmodified	_LLGAAVPAE_					0	0	0			REV__ENST00000246006.4_1_20:23066758-23066941:-|nuORF	REV__ENST00000246006.4_1_20:23066758-23066941:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	420.7462463378906	2	420.744911	839.475269	2.1957	0.00092382	0.19369	8.1494E-05	2.3894	0.0010053	420.74487327628344	134.35	0.50479	134.35	134.1	134.61	0					19	10	2	0	0	0	0.42057	1	15654	15654		50.025	0	1	380390	+		31687	23839	26068	26093	34956	34956					0.04910997494471303
LLGAEASLLS	10	Unmodified	_LLGAEASLLS_					0	0	0		ENST00000262366.7_1_16:4387659-4387791:+|nuORF	ENST00000262366.7_1_16:4387659-4387791:+|nuORF	ENST00000262366.7_1_16:4387659-4387791:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.2932434082031	2	487.281857	972.549162	-0.033471	-1.631E-05	-0.39278	-0.0001914	-0.42626	-0.00020771	487.28167305669217	105.94	1.4461	104.59	104.09	105.54	-1.3482					40	27	2	0	0	0	0.026871	1	7478	7478		15.642	0	1	52487			31688	9890	26069	26094	34957	34957					0.06178920866148019
LLGAGAVEQA	10	Unmodified	_LLGAGAVEQA_					0	0	0			REV__ENST00000565736.1_1_16:29815990-29816668:+|nuORF	REV__ENST00000565736.1_1_16:29815990-29816668:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.78265380859375	2	464.758549	927.502546	-1.277	-0.00059352	1.3406	0.00062304	0.063526	2.9524E-05	464.75895632079676	52.43	0.49375	49.617	49.345	49.839	-2.8129					13	9	2	0	0	0	0.026752	1	3468	3468		44.117	12.162	1	16449	+		31689	27688	26070	26095	34958	34958					0.035894810348509054
LLGAIVGGL	9	Unmodified	_LLGAIVGGL_					0	0	0		tr|A0A553ST65|A0A553ST65_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_04155PE=4SV=1	tr|A0A553ST65|A0A553ST65_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_04155PE=4SV=1	tr|A0A553ST65|A0A553ST65_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_04155PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	406.2436828613281	2	406.765646	811.516739	1.6385	0.0006665	-1.5828	-0.00064382	0.055768	2.2685E-05	406.76488520603965	81.326	1.3827	79.678	79.265	80.648	-1.6485					52	26	3	0	0	0	0.027462	1	6985	6985		21.702	0	1	128190			31690	34463	26071	26096	34959	34959					0.10344178253808423
LLGAIVGGL	9	Unmodified	_LLGAIVGGL_					0	0	0		tr|A0A553ST65|A0A553ST65_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_04155PE=4SV=1	tr|A0A553ST65|A0A553ST65_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_04155PE=4SV=1	tr|A0A553ST65|A0A553ST65_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_04155PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	406.765646	811.516739	0.33988	0.00013825	-0.065185	-2.6515E-05	0.2747	0.00011174	406.76546185028764	81.642	1.3478	79.32	79.007	80.355	-2.3226	-0.1569	0.00074628	NaN	29.842	47	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195570			31691	34463	26071	26096							0.10344178253808423
LLGANKIALP	10	Unmodified	_LLGANKIALP_					0	0	0			REV__ENSG00000186334|ENST00000335230|SLC36A3	REV__ENSG00000186334|ENST00000335230|SLC36A3	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.32147216796875	2	505.32386	1008.63317	2.9213	0.0014762	-3.278	-0.0016565	-0.35672	-0.00018026	505.32217137829366	133.94	1.5796	132.42	132.05	133.63	-1.5257					92	31	4	0	0	0	0.52321	1	12925	12925		51.335	5.3835	1	340380	+		31692	22576	26072	26097	34960	34960					0.12919496753693238
LLGASVVPF	9	Unmodified	_LLGASVVPF_					0	0	0		SLC39A14-PPP3CC|3|fusion;SLC39A14-PPP3CC|1|fusion;SLC39A14-PPP3CC|2|fusion;nc|ENSG00000104635|Q15043-2|SLC39A14;ENSG00000104635|ENST00000381237|SLC39A14	SLC39A14-PPP3CC|3|fusion	SLC39A14-PPP3CC|3|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	451.7707214355469	2	451.770929	901.527304	0.53905	0.00024353	-0.5267	-0.00023795	0.012348	5.5786E-06	451.77058250866264	109.33	1.4061	107.6	107.33	108.73	-1.7256					71	26	4	0	0	0	0.50066	1	10067	10067		42.474	0	1	496170			31693	32832	26073	26098	34961	34961					0.07260160908242597
LLGDMLLLR	9	Unmodified	_LLGDMLLLR_					0	0	0		ENSG00000131910|ENST00000254227|NR0B2	ENSG00000131910|ENST00000254227|NR0B2	ENSG00000131910|ENST00000254227|NR0B2	MULTI-MSMS	OvCa9_classI_Rep3	3	522.317138671875	2	522.31772	1042.62089	-6.6079	-0.0034514	2.9247	0.0015276	-3.6832	-0.0019238	522.31907080674	158.69	0.54803	157.42	157.22	157.77	-1.267					18	10	2	0	0	0	0.55588	1	13699	13699		37.159	0.71236	1	33866			31694	4097	26074	26099	34962	34962					0.10128137019023598
LLGEDGKQLD	10	Unmodified	_LLGEDGKQLD_					0	0	0		tr|A0A553SIQ0|A0A553SIQ0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_15285PE=4SV=1	tr|A0A553SIQ0|A0A553SIQ0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_15285PE=4SV=1	tr|A0A553SIQ0|A0A553SIQ0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_15285PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.8209838867188	2	544.285128	1086.5557	1.8343	0.00099839	-0.33079	-0.00018004	1.5035	0.00081835	544.2841709341286	118.35	0.60925	118.35	118.11	118.72	0					20	12	3	0	0	0	0.026936	1	13570	13570		84.916	5.4645	1	115580			31695	33408	26075	26100	34963	34963					0.015888140268771167
LLGEIQIR	8	Unmodified	_LLGEIQIR_					0	0	0			REV__ENST00000494626.6_1_10:126727653-126848967:-|nuORF	REV__ENST00000494626.6_1_10:126727653-126848967:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.3102111816406	2	471.292559	940.570566	0.59423	0.00028005	-4.3909	-0.0020694	-3.7967	-0.0017894	471.29148395071	22.304	0.2532	20.965	20.826	21.079	-1.3386					6	4	2	0	0	0	0.028476	1	282	282		76.774	5.4784	1	13942	+		31696	26730	26076	26101	34964	34964					0.09790350685534577
LLGELEAEQR	10	Unmodified	_LLGELEAEQR_					0	0	0			REV__ENSG00000168071|ENST00000356786|CCDC88B;REV__nc|ENSG00000168071|A6NC98-5|CCDC88B	REV__nc|ENSG00000168071|A6NC98-5|CCDC88B	MULTI-SECPEP	OvCa9_classI_Rep3	3	579.79248046875	2	579.311677	1156.6088	-4.1828	-0.0024232	-1.0571	-0.00061237	-5.2399	-0.0030355	579.3109709398508	145.12	2.7815	144.14	143.2	145.98	-0.97299					71	55	2	0	0	0	0.027056	1	12189	12189		27.882	0	1	24057	+		31697	21344;28988	26077	26102	34965	34965					0.03676191809518059
LLGEPPPAR	9	Unmodified	_LLGEPPPAR_					0	0	0		nc|ENSG00000063660|P35052-2|GPC1;ENST00000469694.5_1_2:241381745-241403123:+|nuORF	nc|ENSG00000063660|P35052-2|GPC1	nc|ENSG00000063660|P35052-2|GPC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.750244140625	2	475.276909	948.539266	-0.66659	-0.00031682	2.6388	0.0012542	1.9722	0.00093734	475.27813528546903	53.454	0.17152	53.454	53.347	53.519	0					5	3	2	0	0	0	0.027462	1	4240	4240		37.159	0	1	75422			31698	12348	26078	26103	34966	34966					0.06293777651421806
LLGEQLVSL	9	Unmodified	_LLGEQLVSL_					0	0	0			REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-MSMS	OvCa9_classI_Rep2	2	486.29022216796875	2	486.292225	970.569897	0.44909	0.00021839	-0.7299	-0.00035494	-0.28081	-0.00013655	486.29178638170987	132.77	2.1161	132.55	132.23	134.34	-0.22696					105	42	3	0	0	0	0.53957	1	13231	13231		38.806	0	1	834840	+		31699	18651	26079	26104	34967	34967					0.08343511245811897
LLGFALAYVI	10	Unmodified	_LLGFALAYVI_					0	0	0			REV__GPR149|p.R262Lfs*52|1|0.05|ENSG00000174948|chr3:154428833-154428834|-/GACTTTTGAAAGGAGAAGCATTTAGT|frameshift_variant	REV__GPR149|p.R262Lfs*52|1|0.05|ENSG00000174948|chr3:154428833-154428834|-/GACTTTTGAAAGGAGAAGCATTTAGT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3306274414062	2	540.328611	1078.64267	-1.2676	-0.00068491	4.0333	0.0021793	2.7657	0.0014944	540.3307152267141	139.22	4.0818	138.16	137	141.08	-1.0595					200	82	3	0	0	0	0.73286	1	11336	11336		26.796	2.5934	1	55828	+		31700	21862	26080	26105	34968	34968					0.10649265039205602
LLGFVKGDTAL	11	Unmodified	_LLGFVKGDTAL_					0	0	0		tr|A0A553SG05|A0A553SG05_NIACIHEATrepeatdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09855PE=4SV=1	tr|A0A553SG05|A0A553SG05_NIACIHEATrepeatdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09855PE=4SV=1	tr|A0A553SG05|A0A553SG05_NIACIHEATrepeatdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09855PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3294067382812	2	567.331882	1132.64921	-2.6412	-0.0014984	-1.2123	-0.00068778	-3.8535	-0.0021862	567.3310908608092	141.92	3.9983	140.91	138.91	142.91	-1.0106					224	80	5	0	0	0	0.70142	1	11727	11727		29.17	1.2878	1	127690			31701	33102	26081	26106	34969	34969					0.0881915819995811
LLGGLDHIVD	10	Unmodified	_LLGGLDHIVD_					0	0	0		ENSG00000062650|ENST00000298767|WAPL;nc|ENSG00000062650|Q7Z5K2-2|WAPL;nc|ENSG00000062650|Q7Z5K2-3|WAPL	ENSG00000062650|ENST00000298767|WAPL	ENSG00000062650|ENST00000298767|WAPL	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.8259887695312	2	526.292756	1050.57096	-1.135	-0.00059735	0.88082	0.00046357	-0.25419	-0.00013378	526.2930371667941	100.51	1.1409	99.677	98.964	100.1	-0.83051					63	22	4	0	0	0	0.02661	1	9235	9235		49.442	1.7842	1	291310			31702	1278	26082	26107	34970	34970					0.04769725614710296
LLGGLFVKFV	10	Unmodified	_LLGGLFVKFV_					0	0	0			REV__MER49_dup1305|chr21:41210187-41211078:+|1.3236421071491895|0.4412608656295442|1.58|428.0|59|3|anti-sense	REV__MER49_dup1305|chr21:41210187-41211078:+|1.3236421071491895|0.4412608656295442|1.58|428.0|59|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.84033203125	2	546.844428	1091.6743	-6.4593	-0.0035322	-1.1396	-0.00062319	-7.5989	-0.0041554	546.8437237604664	159.32	1.8651	157.73	157.41	159.27	-1.5858					118	42	5	0	0	0	0.74484	1	15781	15781		25.45	0	1	864300	+		31703	28651	26083	26108	34971	34971					0.13213257793177036
LLGGRFGGGLQ	11	Unmodified	_LLGGRFGGGLQ_					0	0	0			REV__ENST00000495893.6_1_3:169814241-169814379:-|nuORF	REV__ENST00000495893.6_1_3:169814241-169814379:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.275390625	2	537.806365	1073.59818	2.7914	0.0015013	-1.0468	-0.00056298	1.7446	0.00093827	537.8059146795152	99.027	0.69093	99.027	98.838	99.529	0					29	16	2	0	0	0	0.0253	1	10946	10946		42.396	10.441	1	623260	+		31704	26750	26084	26109	34972	34972					0.06432253945763478
LLGGWHVVL	9	Unmodified	_LLGGWHVVL_					0	0	0			REV__nc|ENSG00000115486|P38435-2|GGCX	REV__nc|ENSG00000115486|P38435-2|GGCX	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.75482177734375	2	497.297645	992.580737	0.22192	0.00011036	-0.44843	-0.000223	-0.22651	-0.00011264	497.29740338103437	115.36	1.9118	113.97	113.15	115.06	-1.3977					87	37	3	0	0	0	0.027462	1	10788	10788		29.842	1.5873	1	73381	+		31705	18247	26085	26110	34973	34973					0.08414958410764939
LLGGWHVVL	9	Unmodified	_LLGGWHVVL_					0	0	0			REV__nc|ENSG00000115486|P38435-2|GGCX	REV__nc|ENSG00000115486|P38435-2|GGCX	MULTI-MATCH	OvCa9_classI_Rep2	2		2	497.297645	992.580737	0.16269	8.0905E-05	-0.33457	-0.00016638	-0.17188	-8.5475E-05	497.2973756445647	114.02	1.5305	113.91	113.17	114.7	-0.11777	0.023078	-7.6679E-05	NaN	60.404	70	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46845	+		31706	18247	26085	26110							0.08414958410764939
LLGGWHVVL	9	Unmodified	_LLGGWHVVL_					0	0	0			REV__nc|ENSG00000115486|P38435-2|GGCX	REV__nc|ENSG00000115486|P38435-2|GGCX	MULTI-MATCH	OvCa9_classI_Rep3	3		2	497.297645	992.580737	-0.41485	-0.0002063	0.033673	1.6746E-05	-0.38117	-0.00018956	497.29755431077854	115.01	1.8262	113.96	113.21	115.03	-1.055	0.077319	0.00028957	NaN	60.404	81	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53342	+		31707	18247	26085	26110							0.08414958410764939
LLGHPPLL	8	Unmodified	_LLGHPPLL_					0	0	0			REV__ENST00000570016.5_1_16:29873914-29874308:-|nuORF	REV__ENST00000570016.5_1_16:29873914-29874308:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	430.27392578125	2	430.273638	858.532724	-0.29706	-0.00012782	0.34891	0.00015013	0.051854	2.2311E-05	430.27363198332677	107.54	1.9628	107.24	106.57	108.54	-0.30836					111	39	5	0	0	0	0.69862	1	10068	10068		43.626	10.133	1	399440	+		31708	23738	26086	26111	34974	34974					0.09779884490706081
LLGIETPL	8	Unmodified	_LLGIETPL_					0	0	0		ENSG00000090339|ENST00000264832|ICAM1	ENSG00000090339|ENST00000264832|ICAM1	ENSG00000090339|ENST00000264832|ICAM1	MULTI-MSMS	OvCa9_classI_Rep3	3	428.2615966796875	2	428.262936	854.51132	-2.5111	-0.0010754	-0.44999	-0.00019271	-2.9611	-0.0012681	428.26264584865925	144.43	1.5889	143.46	143.1	144.69	-0.97301					79	31	4	0	0	0	0.74361	1	12066	12066		29.842	1.5873	1	839380			31709	1835	26087	26112	34975	34975					0.0782445467133357
LLGIGIHEF	9	Unmodified	_LLGIGIHEF_					0	0	0			REV__nc|ENSG00000068878|Q14997-3|PSME4	REV__nc|ENSG00000068878|Q14997-3|PSME4	MULTI-MSMS	OvCa99_classI_Rep5	1	499.7865295410156	2	499.78711	997.559667	1.5939	0.00079663	-2.8696	-0.0014342	-1.2757	-0.00063757	499.7854977471157	118.7	0.70948	118.7	118.44	119.15	0					34	14	3	0	0	0	0.22913	1	13628	13628		71.378	11.084	1	615890	+		31710	16860	26088	26113	34976	34976					0.06078948311221666
LLGIIKKPN	9	Unmodified	_LLGIIKKPN_					0	0	0			REV__tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	REV__tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.33380126953125	2	498.334227	994.653902	-0.32382	-0.00016137	-0.21052	-0.00010491	-0.53434	-0.00026628	498.334091062265	122.71	0.88941	122.49	122.12	123.01	-0.21803					72	17	5	0	0	0	0.30002	1	11943	11943		62.978	2.0065	1	2870900	+		31711	31876	26089	26114	34977	34977					0.15636087133373167
LLGIIKKPN	9	Unmodified	_LLGIIKKPN_					0	0	0			REV__tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	REV__tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3333740234375	2	498.334227	994.653902	-0.31291	-0.00015594	0.085793	4.2754E-05	-0.22712	-0.00011318	498.334174042398	135.29	1.7167	135.06	134.69	136.4	-0.22696					83	34	4	0	0	0	0.44294	1	13462	13462		47.916	5.5195	1	281670	+		31712	31876	26089	26114	34978	34978					0.15636087133373167
LLGIIKKPN	9	Unmodified	_LLGIIKKPN_					0	0	0			REV__tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	REV__tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.33367919921875	2	498.334227	994.653902	-0.9719	-0.00048433	0.35815	0.00017848	-0.61375	-0.00030585	498.3344016114543	124.22	1.0633	122.83	122.32	123.39	-1.3908					81	20	5	0	0	0	0.44294	1	11808	11808		47.916	1.9434	1	4028000	+		31713	31876	26089	26114	34979	34979					0.15636087133373167
LLGIIYLVN	9	Unmodified	_LLGIIYLVN_					0	0	0			REV__tr|A0A553SIK5|A0A553SIK5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15045PE=4SV=1	REV__tr|A0A553SIK5|A0A553SIK5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15045PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.800048828125	2	509.320786	1016.62702	-0.57588	-0.00029331	-0.35535	-0.00018099	-0.93123	-0.00047429	509.32112572432686	117.08	1.2053	115.72	115.46	116.66	-1.3645					32	22	3	0	0	0	0.027462	1	11034	11034		8.8223	5.138	1	39852	+		31714	29900	26090	26115	34980	34980					0.11936978522169284
LLGIIYLVN	9	Unmodified	_LLGIIYLVN_					0	0	0			REV__tr|A0A553SIK5|A0A553SIK5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15045PE=4SV=1	REV__tr|A0A553SIK5|A0A553SIK5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15045PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	509.320786	1016.62702	-0.84555	-0.00043066	1.1089	0.00056479	0.26336	0.00013413	509.3211567040554	115.71	0.84148	115.59	115.44	116.28	-0.11777	-0.10015	0.00072305	NaN	8.8223	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26327	+		31715	29900	26090	26115							0.11936978522169284
LLGIIYLVN	9	Unmodified	_LLGIIYLVN_					0	0	0			REV__tr|A0A553SIK5|A0A553SIK5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15045PE=4SV=1	REV__tr|A0A553SIK5|A0A553SIK5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15045PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	509.320786	1016.62702	-0.95933	-0.0004886	-0.79592	-0.00040538	-1.7552	-0.00089398	509.32103993168124	116.81	0.64374	115.77	115.54	116.18	-1.0414	0.078689	-0.0012173	NaN	8.8223	28	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28553	+		31716	29900	26090	26115							0.11936978522169284
LLGILGYRGT	10	Unmodified	_LLGILGYRGT_					0	0	0			REV__tr|A0A553SRX6|A0A553SRX6_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_02035PE=4SV=1	REV__tr|A0A553SRX6|A0A553SRX6_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_02035PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8165283203125	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.69073	1	11550	11550		31.53	4.8369	1	178650	+		31717	30774	26091	26116	34981	34981					0.09498308748334239
LLGILVFRS	9	Unmodified	_LLGILVFRS_					0	0	0		ENST00000488068.5_1_7:143088552-143095662:-|nuORF;ENSG00000146904|ENST00000275815|EPHA1;EPHA1|p.A734Hfs*4|1|0.08|ENSG00000146904|chr7:143394960-143394960|C/-|frameshift_variant	ENST00000488068.5_1_7:143088552-143095662:-|nuORF	ENST00000488068.5_1_7:143088552-143095662:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.8048400878906	2	509.326402	1016.63825	3.589	0.001828	-3.5204	-0.001793	0.068643	3.4962E-05	509.32444943372064	132.64	0.7849	131.14	130.85	131.63	-1.5014					37	15	3	0	0	0	0.027462	1	12813	12813		12.959	0	1	40061			31718	5316	26092	26117	34982	34982					0.1305980061632681
LLGINKPKL	9	Unmodified	_LLGINKPKL_					0	0	0			REV__tr|A0A7D6VPL6|A0A7D6VPL6_9CLOTATP-dependentDNAhelicaseRecGC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17315PE=4SV=1	REV__tr|A0A7D6VPL6|A0A7D6VPL6_9CLOTATP-dependentDNAhelicaseRecGC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17315PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.33380126953125	2	498.334227	994.653902	-0.31291	-0.00015594	0.085793	4.2754E-05	-0.22712	-0.00011318	498.334174042398	135.29	1.7167	135.06	134.69	136.4	-0.22696					83	34	4	0	0	0	0.58665	1	13500	13500		33.516	0	1	281670	+		31719	31259	26093	26118	34983	34983					0.15636087133384535
LLGINKPKL	9	Unmodified	_LLGINKPKL_					0	0	0			REV__tr|A0A7D6VPL6|A0A7D6VPL6_9CLOTATP-dependentDNAhelicaseRecGC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17315PE=4SV=1	REV__tr|A0A7D6VPL6|A0A7D6VPL6_9CLOTATP-dependentDNAhelicaseRecGC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17315PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3329772949219	2	498.334227	994.653902	1.2643	0.00063007	-1.8659	-0.00092985	-0.60157	-0.00029978	498.3332884380841	124.71	3.4398	123.66	123.27	126.71	-1.0519					179	65	5	0	0	0	0.52083	1	9811	9811		40.573	12.69	1	3929400	+		31720	31259	26093	26118	34984	34984					0.15636087133384535
LLGINKPKL	9	Unmodified	_LLGINKPKL_					0	0	0			REV__tr|A0A7D6VPL6|A0A7D6VPL6_9CLOTATP-dependentDNAhelicaseRecGC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17315PE=4SV=1	REV__tr|A0A7D6VPL6|A0A7D6VPL6_9CLOTATP-dependentDNAhelicaseRecGC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17315PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3332214355469	2	498.334227	994.653902	-1.8174	-0.00090567	1.0953	0.00054583	-0.72208	-0.00035984	498.334772441205	125.12	4.2738	123.72	123.39	127.66	-1.3908					210	84	5	0	0	0	0.50066	1	11976	11976		42.474	1.9018	1	4129000	+		31721	31259	26093	26118	34985	34985					0.15636087133384535
LLGIVASIR	9	Unmodified	_LLGIVASIR_					0	0	0			REV__ENST00000467223.5_1_2:118846216-118865895:+|nuORF	REV__ENST00000467223.5_1_2:118846216-118865895:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.3104248046875	2	471.310752	940.606951	1.5017	0.00070778	-1.4762	-0.00069575	0.025522	1.2029E-05	471.3098936751472	34.387	2.0483	31.599	31.003	33.051	-2.7881					80	40	3	0	0	0	0.52083	1	1006	1006		40.573	0	1	114300	+		31722	26201	26094	26119	34986	34986					0.13427227582235446
LLGKCLLSP	9	Carbamidomethyl (C)	_LLGKC(Carbamidomethyl (C))LLSP_	LLGKC(1)LLSP		LLGKC(82)LLSP		0	1	0		nc|ENSG00000168229|Q13258-2|PTGDR;ENSG00000168229|ENST00000306051|PTGDR	nc|ENSG00000168229|Q13258-2|PTGDR	nc|ENSG00000168229|Q13258-2|PTGDR	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.7945556640625	2	500.79662	999.578688	0.3476	0.00017408	-4.239	-0.0021229	-3.8914	-0.0019488	500.79446400604274	110.01	4.1489	108.41	107.65	111.8	-1.6011					189	79	5	0	0	0	0.16524	1	10130	10130		82.305	15.876	1	2535700			31723	6881	26095	26120	34987	34987	69				0.07888161610640054
LLGKRSLPE	9	Unmodified	_LLGKRSLPE_					0	0	0		ITIH3|p.Q851Pfs*28|1|0.05|ENSG00000162267|chr3:52808557-52808558|-/T|frameshift_variant;nc|ENSG00000162267|Q06033-2|ITIH3;ENSG00000162267|ENST00000449956|ITIH3	ITIH3|p.Q851Pfs*28|1|0.05|ENSG00000162267|chr3:52808557-52808558|-/T|frameshift_variant	ITIH3|p.Q851Pfs*28|1|0.05|ENSG00000162267|chr3:52808557-52808558|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	506.8087158203125	2	506.811116	1011.60768	-1.1259	-0.00057063	0.32757	0.00016601	-0.79835	-0.00040461	506.81130069607957	99.678	3.3722	98.848	98.219	101.59	-0.83051					157	66	4	0	0	0	0.13482	1	9148	9148		87.754	21.857	1	2351400			31724	6166	26096	26121	34988	34988					0.1023402223128187
LLGKTYASTKL	11	Unmodified	_LLGKTYASTKL_					0	0	0			REV__nc|ENSG00000110274|Q9UPV0-2|CEP164	REV__nc|ENSG00000110274|Q9UPV0-2|CEP164	MULTI-MSMS	OvCa9_classI_Rep2	2	597.85498046875	2	597.858264	1193.70197	-3.1766	-0.0018991	0.037639	2.2503E-05	-3.1389	-0.0018766	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.69081	1	14948	14948		32.812	8.2932	1	436470	+		31725	17977	26097	26122	34989	34989					0.11287116262747077
LLGKTYASTKL	11	Unmodified	_LLGKTYASTKL_					0	0	0			REV__nc|ENSG00000110274|Q9UPV0-2|CEP164	REV__nc|ENSG00000110274|Q9UPV0-2|CEP164	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8566284179688	2	597.858264	1193.70197	-2.7036	-0.0016164	-0.53743	-0.00032131	-3.241	-0.0019377	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.58572	2	12509	12509;12521		45.972	8.1607	1	591030	+		31726	17977	26097	26122	34990;34991	34990					0.11287116262747077
LLGKVRLL	8	Unmodified	_LLGKVRLL_					0	0	0		ENST00000602775.5_1_5:139929747-139930248:-|nuORF	ENST00000602775.5_1_5:139929747-139930248:-|nuORF	ENST00000602775.5_1_5:139929747-139930248:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	456.3254699707031	2	456.323663	910.632772	0.20258	9.244E-05	0.67483	0.00030794	0.8774	0.00040038	456.3237910885909	73.602	0.77783	73.602	73.317	74.095	0					48	19	4	0	0	0	0.64377	1	7248	7248		54.765	6.8491	1	3921100			31727	14251	26098	26123	34992	34992					0.17388121824524205
LLGLARLGVL	10	Unmodified	_LLGLARLGVL_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.7750854492188	2	512.847502	1023.68045	1.3232	0.00067859	1.0081	0.00051699	2.3313	0.0011956	512.8477482205074	78.997	0.56631	78.997	78.709	79.276	0					30	13	3	0	0	0	0.026939	1	8004	8004		24.203	0	1	717830	+		31728	22747	26099	26124	34993	34993					0.16955776024713032
LLGLGIVRH	9	Unmodified	_LLGLGIVRH_					0	0	0			REV__ENST00000463427.5_1_2:112843607-112863481:+|nuORF	REV__ENST00000463427.5_1_2:112843607-112863481:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	489.31414794921875	2	489.316369	976.618185	-5.0625	-0.0024771	0.75357	0.00036874	-4.3089	-0.0021084	489.3166161919068	151.03	1.2523	150.08	149.76	151.01	-0.95647					68	24	4	0	0	0	0.64339	1	12885	12885		26.796	1.3459	1	299480	+		31729	20329	26100	26125	34994	34994					0.12894049676367558
LLGLGTMLSF	10	Unmodified	_LLGLGTMLSF_					0	0	0		ENST00000339157.9_1_20:25280885-25281167:-|nuORF	ENST00000339157.9_1_20:25280885-25281167:-|nuORF	ENST00000339157.9_1_20:25280885-25281167:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.2676391601562	2	526.296453	1050.57835	-0.8358	-0.00043988	4.2015	0.0022112	3.3657	0.0017714	526.2984964743674	90.893	1.172	88.318	88.007	89.179	-2.575					55	22	4	0	0	0	0.026752	1	7880	7880		44.117	9.9443	1	292470			31730	10546	26101	26126	34995	34995					0.055087418907760366
LLGLGTMLSF	10	Unmodified	_LLGLGTMLSF_					0	0	0		ENST00000339157.9_1_20:25280885-25281167:-|nuORF	ENST00000339157.9_1_20:25280885-25281167:-|nuORF	ENST00000339157.9_1_20:25280885-25281167:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	526.296453	1050.57835	1.6065	0.0008455	1.6356	0.00086083	3.2422	0.0017063	526.2971855236523	89.674	1.3352	88.372	88.087	89.422	-1.302	0.11995	-0.0016042	NaN	20.947	58	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279530			31731	10546	26101	26126							0.055087418907760366
LLGLILGWF	9	Unmodified	_LLGLILGWF_					0	0	0			REV__nc|ENSG00000100170|P13866-2|SLC5A1	REV__nc|ENSG00000100170|P13866-2|SLC5A1	MULTI-MSMS	OvCa9_classI_Rep3	3	516.3132934570312	2	516.318046	1030.62154	-5.3969	-0.0027865	-2.4808	-0.0012809	-7.8778	-0.0040674	516.3166994253895	156.49	2.0589	155.32	154.75	156.81	-1.1707					101	49	4	0	0	0	0.61768	1	13498	13498		29.842	5.6388	1	710990	+		31732	17376	26102	26127	34996	34996					0.10745299730388069
LLGLIREV	8	Unmodified	_LLGLIREV_					0	0	0			REV__nc|ENSG00000107672|Q9NXX6-2|NSMCE4A	REV__nc|ENSG00000107672|Q9NXX6-2|NSMCE4A	MULTI-MSMS	OvCa9_classI_Rep3	3	456.7970275878906	2	456.797478	911.580402	0.40268	0.00018394	-0.77327	-0.00035323	-0.37058	-0.00016928	456.7970629432732	104.69	4.1681	103.25	102.81	106.98	-1.4342					186	80	4	0	0	0	0.39692	1	7350	7350		88.643	3.2834	1	1565700	+		31733	17853	26103	26128	34997	34997					0.1210753869089558
LLGLISSY	8	Unmodified	_LLGLISSY_					0	0	0		tr|A0A553SS87|A0A553SS87_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_02630PE=4SV=1	tr|A0A553SS87|A0A553SS87_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_02630PE=4SV=1	tr|A0A553SS87|A0A553SS87_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_02630PE=4SV=1	MSMS	OvCa9_classI_Rep2	2	433.255859375	2	433.255111	864.49567	NaN	NaN	NaN	NaN	NaN	NaN	NaN	162.87	1	162.65	162.15	163.15	-0.22696								0	0	0	0.30129	1	16601	16601		39.021	3.8208	1				31734	34344	26104	26129	34998	34998					0.05800168154280527
LLGLLAPPG	9	Unmodified	_LLGLLAPPG_					0	0	0		ENSG00000182575|ENST00000328741|NXPH3	ENSG00000182575|ENST00000328741|NXPH3	ENSG00000182575|ENST00000328741|NXPH3	MULTI-MSMS	OvCa9_classI_Rep2	2	425.77508544921875	2	425.773471	849.53239	-0.95445	-0.00040638	4.1695	0.0017752	3.215	0.0013689	425.7751660668595	68.762	2.1455	66.142	65.721	67.866	-2.6203					132	42	5	0	0	0	0.61768	1	5415	5415		29.842	3.0454	1	3515300			31735	8009	26105	26130	34999	34999					0.10160464770854105
LLGLLCFL	8	Unmodified	_LLGLLCFL_					0	0	0		ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	MULTI-SECPEP	OvCa99_classI_Rep5	1	445.7245178222656	2	446.27225	890.529947	2.4552	0.0010957	3.9405	0.0017585	6.3956	0.0028542	446.2738919884465	127.85	0.55132	127.85	127.49	128.04	0					18	11	2	0	0	0	0.028476	1	14762	14762		24.504	0	1	87100			31736	5306	26106	26131	35000	35000					0.08030293041542791
LLGLLEEL	8	Unmodified	_LLGLLEEL_					0	0	0		PLAC9|p.K68E|1|0.22|ENSG00000189129|chr10:80144262-80144262|A/G|missense_variant;ENSG00000189129|ENST00000372263|PLAC9	PLAC9|p.K68E|1|0.22|ENSG00000189129|chr10:80144262-80144262|A/G|missense_variant	PLAC9|p.K68E|1|0.22|ENSG00000189129|chr10:80144262-80144262|A/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	450.2748107910156	2	450.276044	898.537535	-3.7498	-0.0016884	0.58642	0.00026405	-3.1634	-0.0014244	450.27623858459356	147.83	1.7988	146.88	146.5	148.3	-0.95119					100	35	5	0	0	0	0.74679	1	12446	12446		28.254	0	1	751980			31737	8536	26107	26132	35001	35001					0.08420723842812095
LLGLLMLGLF	10	Unmodified	_LLGLLMLGLF_					0	0	0		nc|ENSG00000115155|Q9HC10-2|OTOF;nc|ENSG00000115155|Q9HC10-5|OTOF	nc|ENSG00000115155|Q9HC10-2|OTOF	nc|ENSG00000115155|Q9HC10-2|OTOF	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.3355712890625	2	545.340664	1088.66677	0.61263	0.00033409	0.82502	0.00044992	1.4376	0.00078401	545.340991573207	141.55	0.39928	141.55	141.34	141.74	0					12	7	2	0	0	0	0.027147	1	16548	16548		19.36	0	1	39387			31738	14974	26108	26133	35002	35002					0.12598782201234826
LLGLNLPRTN	10	Unmodified	_LLGLNLPRTN_					0	0	0		ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	ENSG00000155850|ENST00000286298|SLC26A2	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.30712890625	2	555.835123	1109.65569	1.8776	0.0010437	2.8245	0.0015699	4.7021	0.0026136	555.8378882309283	133.43	1.0215	133.43	133.08	134.1	0					47	21	4	0	0	0	0.026891	1	15525	15525		24.519	0	1	151400			31739	5805	26109	26134	35003	35003					0.10525096151354774
LLGLRPLHQF	10	Unmodified	_LLGLRPLHQF_					0	0	0			REV__ENSG00000255690|ENST00000539664|TRIL	REV__ENSG00000255690|ENST00000539664|TRIL	MULTI-MSMS	OvCa9_classI_Rep2	2	597.3565673828125	2	597.361308	1192.70806	-5.0217	-0.0029997	0.45711	0.00027306	-4.5646	-0.0027267	597.3613502692024	157	0.93945	156.78	156.54	157.48	-0.22696					63	26	4	0	0	0	0.71192	1	16017	16017		29.15	10.825	1	80526	+		31740	23532	26110	26135	35004	35004					0.11941679284927886
LLGLSAHPKL	10	Unmodified	_LLGLSAHPKL_					0	0	0		nc|ENSG00000179443|Q8NH95|OR13C6P;nc|ENSG00000243641|P0DN81|OR13C7	nc|ENSG00000179443|Q8NH95|OR13C6P	nc|ENSG00000179443|Q8NH95|OR13C6P	MULTI-MSMS	OvCa9_classI_Rep3	3	524.827392578125	2	524.829309	1047.64407	-6.4209	-0.0033699	2.2692	0.001191	-4.1517	-0.0021789	524.8303693371411	156.49	1.5557	155.32	154.95	156.51	-1.1687					100	33	5	0	0	0	0.76627	1	13485	13485		23.042	0	1	1025700			31741	15202	26111	26136	35005	35005					0.12214899127980061
LLGLSAHPKL	10	Unmodified	_LLGLSAHPKL_					0	0	0		nc|ENSG00000179443|Q8NH95|OR13C6P;nc|ENSG00000243641|P0DN81|OR13C7	nc|ENSG00000179443|Q8NH95|OR13C6P	nc|ENSG00000179443|Q8NH95|OR13C6P	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.8262329101562	2	524.829309	1047.64407	-5.767	-0.0030267	1.6173	0.0008488	-4.1497	-0.0021779	524.8300427930473	156.94	1.6972	155.39	155.01	156.7	-1.545					136	47	6	0	0	0	0.72319	1	15498	15498		27.882	0	1	1010500			31742	15202	26111	26136	35006	35006					0.12214899127980061
LLGLSKMSVSY	11	Unmodified	_LLGLSKMSVSY_					0	0	0		ENST00000466445.1_1_2:176858942-176860312:-|nuORF	ENST00000466445.1_1_2:176858942-176860312:-|nuORF	ENST00000466445.1_1_2:176858942-176860312:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	599.3319091796875	2	599.331024	1196.6475	0.93062	0.00055775	-3.2442	-0.0019444	-2.3136	-0.0013866	599.3288601635584	113.17	1.4812	111.73	111.41	112.89	-1.4461					68	29	4	0	0	0	0.61983	1	10494	10494		42.864	7.246	1	202590			31743	12291	26112	26137	35007	35007					0.05703781119677842
LLGLVPRAL	9	Unmodified	_LLGLVPRAL_					0	0	0			REV__ENST00000380680.4_1_13:30423810-30423975:-|nuORF	REV__ENST00000380680.4_1_13:30423810-30423975:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	476.3205871582031	2	476.32112	950.627687	-0.03478	-1.6567E-05	-0.27228	-0.00012969	-0.30706	-0.00014626	476.32093576429344	108.77	1.7316	108.54	108.17	109.91	-0.22498					106	34	4	0	0	0	0.19716	1	10203	10203		76.847	2.8719	1	1471400	+		31744	25182	26113	26138	35008	35008					0.15039817961883273
LLGLVPRAL	9	Unmodified	_LLGLVPRAL_					0	0	0			REV__ENST00000380680.4_1_13:30423810-30423975:-|nuORF	REV__ENST00000380680.4_1_13:30423810-30423975:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	476.32098388671875	2	476.32112	950.627687	0.74261	0.00035372	-1.088	-0.00051824	-0.34539	-0.00016452	476.3205127768248	109.82	1.8658	108.67	108.24	110.11	-1.1444					108	35	5	0	0	0	0.19716	1	7930	7930		76.847	0	1	1722500	+		31745	25182	26113	26138	35009	35009					0.15039817961883273
LLGLWVAEVLV	11	Unmodified	_LLGLWVAEVLV_					0	0	0		ENSG00000173431|ENST00000308227|RNASE8	ENSG00000173431|ENST00000308227|RNASE8	ENSG00000173431|ENST00000308227|RNASE8	MULTI-MSMS	OvCa9_classI_Rep2	2	606.36962890625	2	606.373549	1210.73255	-3.14	-0.001904	-3.377	-0.0020477	-6.517	-0.0039517	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.72466	1	15119	15119		19.997	1.7347	1	257720			31746	7375	26114	26139	35010	35010					0.13560894647798705
LLGMKPPQQSL	11	Unmodified	_LLGMKPPQQSL_					0	0	0		ENSG00000151458|ENST00000504087|ANKRD50	ENSG00000151458|ENST00000504087|ANKRD50	ENSG00000151458|ENST00000504087|ANKRD50	MULTI-MSMS	OvCa9_classI_Rep4_	4	404.56781005859375	3	404.565403	1210.67438	1.4857	0.00060107	1.5354	0.00062118	3.0211	0.0012223	404.5660077907759	58.263	1.5035	54.918	54.546	56.049	-3.3449					68	29	3	0	0	0	0.54114	1	3850	3850		50.034	0.49747	1	954190			31747	5552	26115	26140	35011	35011					0.07746889730879047
LLGNLRPPS	9	Unmodified	_LLGNLRPPS_					0	0	0		ENSG00000167992|ENST00000335613|VWCE;ENST00000301770.10_1_11:61034988-61050313:-|nuORF	ENSG00000167992|ENST00000335613|VWCE	ENSG00000167992|ENST00000335613|VWCE	MULTI-SECPEP	OvCa9_classI_Rep3	3	483.8266296386719	2	483.790184	965.565815	-0.11094	-5.367E-05	1.5412	0.00074563	1.4303	0.00069196	483.7907017693203	72.645	0.64629	70.043	69.769	70.416	-2.6023					15	12	2	0	0	0	0.027455	1	3512	3512		51.335	1.8939	1	13258			31748	6861	26116	26141	35012	35012					0.08165466542766353
LLGPISPGA	9	Unmodified	_LLGPISPGA_					0	0	0			REV__ENSG00000164736|ENST00000297316|SOX17	REV__ENSG00000164736|ENST00000297316|SOX17	MULTI-MSMS	OvCa99_classI_Rep5	1	412.7481994628906	2	412.747453	823.480354	0.96691	0.00039909	0.6444	0.00026597	1.6113	0.00066506	412.7475222155792	31.584	0.49643	31.584	31.41	31.906	0					20	9	3	0	0	0	0.58665	1	1313	1313		33.516	1.5607	1	288420	+		31749	21015	26117	26142	35013	35013					0.06155301357091503
LLGPPEAKRA	10	Unmodified	_LLGPPEAKRA_					0	0	0		ENST00000563666.1_1_16:29810954-29811370:+|nuORF;nc|ENSG00000079616|Q14807-2|KIF22;ENSG00000079616|ENST00000160827|KIF22	ENST00000563666.1_1_16:29810954-29811370:+|nuORF	ENST00000563666.1_1_16:29810954-29811370:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	526.3167724609375	2	526.316566	1050.61858	1.8844	0.00099177	0.093819	4.9378E-05	1.9782	0.0010412	526.3165067493386	97.012	0.72644	97.012	96.753	97.479	0					37	16	3	0	0	0	0.49558	1	10646	10646		54.776	10.66	1	1765300			31750	1617	26118	26143	35014	35014					0.09529424605557324
LLGPPLLQ	8	Unmodified	_LLGPPLLQ_					0	0	0			REV__SRD5A3|p.R113Gfs*21|1|0.15|ENSG00000128039|chr4:55359458-55359459|-/TGGGG|frameshift_variant	REV__SRD5A3|p.R113Gfs*21|1|0.15|ENSG00000128039|chr4:55359458-55359459|-/TGGGG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	425.7757568359375	2	425.773471	849.53239	-0.86174	-0.00036691	3.963	0.0016873	3.1013	0.0013204	425.7750552355212	71.84	1.752	68.383	67.924	69.676	-3.4563					99	35	4	0	0	0	0.75915	1	5499	5499		20.482	0	1	1857400	+		31751	18837	26119	26144	35015	35015					0.10160464770854105
LLGPPLTKLEN	11	Unmodified	_LLGPPLTKLEN_					0	0	0			REV__ENSG00000185245|ENST00000329125|GP1BA	REV__ENSG00000185245|ENST00000329125|GP1BA	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8552856445312	2	597.858264	1193.70197	-2.8966	-0.0017318	-0.34577	-0.00020672	-3.2424	-0.0019385	597.8578774207725	151.94	0.86153	150.51	150.22	151.08	-1.4351					43	18	3	0	0	0	0.72511	1	15020	15020		14.137	1.9303	1	32541	+		31752	22489	26120	26145	35016	35016					0.11287116262747077
LLGPQRRSPL	10	Unmodified	_LLGPQRRSPL_					0	0	0			REV__nc|ENSG00000135063|Q15884-1|ENTREP1	REV__nc|ENSG00000135063|Q15884-1|ENTREP1	MULTI-MSMS	OvCa9_classI_Rep2	2	568.8463134765625	2	568.848564	1135.68258	-0.94065	-0.00053509	-2.591	-0.0014739	-3.5317	-0.002009	568.8468987403617	122.03	1.7301	121.81	120.93	122.66	-0.21803					88	34	3	0	0	0	0.49558	1	11794	11794		54.776	8.8244	1	269790	+		31753	19253	26121	26146	35017	35017					0.12016204762517191
LLGPRASL	8	Unmodified	_LLGPRASL_					0	0	0		ENST00000514463.1_1_3:126157220-126159113:-|nuORF	ENST00000514463.1_1_3:126157220-126159113:-|nuORF	ENST00000514463.1_1_3:126157220-126159113:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	413.7607421875	2	413.760895	825.507237	0.38136	0.00015779	-0.29332	-0.00012136	0.088043	3.6429E-05	413.7606632277241	94.764	1.4305	93.665	93.361	94.792	-1.0995					68	28	4	0	0	0	0.47599	1	8491	8491		79.939	3.1651	1	458180			31754	13029	26122	26147	35018	35018					0.08750409968274653
LLGPRLVLA	9	Unmodified	_LLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	OvCa99_classI_Rep5	1	476.3216552734375	2	476.32112	950.627687	2.5488	0.001214	-0.21851	-0.00010408	2.3303	0.00111	476.32086294244675	108.09	1.2474	108.09	107.86	109.11	0					57	28	4	0	0	0	0.21395	1	12228	12228		73.975	16.163	1	4980500			31755	7096	26123	26148	35019	35019					0.15039817961894641
LLGPRLVLA	9	Unmodified	_LLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	OvCa9_classI_Rep2	2	476.3207092285156	2	476.32112	950.627687	-0.03478	-1.6567E-05	-0.27228	-0.00012969	-0.30706	-0.00014626	476.32093576429344	108.77	1.7316	108.54	108.17	109.91	-0.22498					106	34	4	0	0	0	0.14739	9	10185	10185;10191;10197;10210;10217;10223;10229;10236;10242		85.359	16.875	1	1471400			31756	7096	26123	26148	35020;35021;35022;35023;35024;35025;35026;35027;35028	35020					0.15039817961894641
LLGPRLVLA	9	Unmodified	_LLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	OvCa9_classI_Rep3	3	476.3212890625	2	476.32112	950.627687	0.74261	0.00035372	-1.088	-0.00051824	-0.34539	-0.00016452	476.3205127768248	109.82	1.8658	108.67	108.24	110.11	-1.1444					108	35	5	0	0	0	0.098892	10	7900	7886;7891;7894;7900;7906;7912;7918;7924;7937;7967		97.473	25.522	1	1722500			31757	7096	26123	26148	35029;35030;35031;35032;35033;35034;35035;35036;35037;35038	35032					0.15039817961894641
LLGPRLVLA	9	Unmodified	_LLGPRLVLA_					0	0	0		ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.321044921875	2	476.32112	950.627687	1.2312	0.00058647	-1.6541	-0.0007879	-0.42288	-0.00020143	476.3202634501802	110.36	1.7889	108.76	108.33	110.12	-1.6011					99	33	4	0	0	0	0.064607	6	10154	10132;10142;10154;10166;10178;10202		110.34	36.195	1	1730200			31758	7096	26123	26148	35039;35040;35041;35042;35043;35044	35041					0.15039817961894641
LLGPVLVK	8	Unmodified	_LLGPVLVK_					0	0	0		ENST00000395134.3_1_6:33257633-33258228:+|nuORF;ENSG00000204220|ENST00000374606|PFDN6;ENST00000491382.1_1_6:33257633-33258228:+|nuORF	ENST00000395134.3_1_6:33257633-33258228:+|nuORF	ENST00000395134.3_1_6:33257633-33258228:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	420.23590087890625	2	419.791664	837.568775	-1.3263	-0.00055676	1.3708	0.00057544	0.044512	1.8686E-05	419.7922225270092	92.441	0.85919	89.898	89.669	90.528	-2.5425					27	16	2	0	0	0	0.028476	1	8052	8052		57.453	0	1	83883			31759	8958	26124	26149	35045	35045					0.14349341667571025
LLGQMNELF	9	Unmodified	_LLGQMNELF_					0	0	0		nc|ENSG00000141485|Q86YT5-2|SLC13A5;nc|ENSG00000141485|Q86YT5-4|SLC13A5;nc|ENSG00000141485|Q86YT5-3|SLC13A5;ENSG00000141485|ENST00000433363|SLC13A5	nc|ENSG00000141485|Q86YT5-2|SLC13A5	nc|ENSG00000141485|Q86YT5-2|SLC13A5	MULTI-MSMS	OvCa99_classI_Rep5	1	533.2799682617188	2	532.775885	1063.53722	0.48911	0.00026058	-3.3149	-0.0017661	-2.8258	-0.0015055	532.7739737225475	161.58	0.86565	161.58	161.26	162.13	0					41	16	4	0	0	0	0.27546	1	18994	18994		65.803	1.5959	1	413770			31760	4918	26125	26150	35046	35046					0.007989808513002572
LLGQPPIL	8	Unmodified	_LLGQPPIL_					0	0	0		ENSG00000162757|ENST00000294811|C1orf74	ENSG00000162757|ENST00000294811|C1orf74	ENSG00000162757|ENST00000294811|C1orf74	MULTI-MSMS	OvCa9_classI_Rep2	2	425.77490234375	2	425.773471	849.53239	0.35721	0.00015209	2.8578	0.0012168	3.215	0.0013689	425.77457093952984	70.919	1.9242	68.349	67.916	69.84	-2.5707					106	36	5	0	0	0	0.74679	1	5682	5682		28.254	0	1	1515700			31761	6228	26126	26151	35047	35047					0.10160464770854105
LLGQVILTYN	10	Unmodified	_LLGQVILTYN_					0	0	0		tr|A0A7D6ZH38|A0A7D6ZH38_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01370PE=4SV=1	tr|A0A7D6ZH38|A0A7D6ZH38_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01370PE=4SV=1	tr|A0A7D6ZH38|A0A7D6ZH38_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01370PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3294677734375	2	567.331882	1132.64921	-2.3399	-0.0013275	-1.3687	-0.0007765	-3.7086	-0.002104	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.76627	1	14655	14655		23.042	0	1	241060			31762	35564	26127	26152	35048	35048					0.0881915819995811
LLGQWYGIN	9	Unmodified	_LLGQWYGIN_					0	0	0		tr|A0A7D6W3S7|A0A7D6W3S7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11215PE=4SV=1	tr|A0A7D6W3S7|A0A7D6W3S7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11215PE=4SV=1	tr|A0A7D6W3S7|A0A7D6W3S7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11215PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.7982788085938	2	532.282192	1062.54983	1.147	0.00061053	3.7626	0.0020027	4.9096	0.0026133	532.2840737011401	155.34	0.60988	155.34	155.02	155.63	0					24	11	3	0	0	0	0.027462	1	18223	18223		38.806	13.232	1	124920			31763	35460	26128	26153	35049	35049					0.021057603058579843
LLGRKEGASR	10	Unmodified	_LLGRKEGASR_					0	0	0		ENST00000573745.1_1_17:7165530-7166136:-|nuORF	ENST00000573745.1_1_17:7165530-7166136:-|nuORF	ENST00000573745.1_1_17:7165530-7166136:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.9724731445312	2	543.822547	1085.63054	-0.086241	-4.69E-05	-1.0889	-0.00059216	-1.1751	-0.00063906	543.8216854691973	38.197	0.49469	35.271	35.156	35.651	-2.9264					20	9	3	0	0	0	0.027147	1	1496	1496		10.265	0	1	30647			31764	13923	26129	26154	35050	35050					0.09115041348741215
LLGRNINI	8	Unmodified	_LLGRNINI_					0	0	0			REV__KIF4A|p.C1088Lfs*26|1|0.31|ENSG00000090889|chrX:70417891-70417892|-/C|frameshift_variant	REV__KIF4A|p.C1088Lfs*26|1|0.31|ENSG00000090889|chrX:70417891-70417892|-/C|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	456.7982482910156	2	456.784902	911.55525	0.39167	0.00017891	1.845	0.00084276	2.2367	0.0010217	456.7855576794508	104.64	0.36165	103.2	103.12	103.49	-1.4347					8	6	2	0	0	0	0.028476	1	7319	7319		76.847	0	1	20988	+		31765	17236	26130	26155	35051	35051					0.09593483888306764
LLGRPLYY	8	Unmodified	_LLGRPLYY_					0	0	0		ENSG00000170561|ENST00000302057|IRX2	ENSG00000170561|ENST00000302057|IRX2	ENSG00000170561|ENST00000302057|IRX2	MULTI-MSMS	OvCa9_classI_Rep2	2	497.78717041015625	2	497.789653	993.564752	-1.6586	-0.00082566	-2.618	-0.0013032	-4.2767	-0.0021289	497.78818191941025	38.201	0.9397	35.491	35.271	36.211	-2.7097					48	18	4	0	0	0	0.63104	1	1780	1780		57.453	8.0111	1	265770			31766	7117	26131	26156	35052	35052					0.06771252173848552
LLGRVLAHV	9	Unmodified	_LLGRVLAHV_					0	0	0			REV__ENSG00000204839|ENST00000398882|MROH6	REV__ENSG00000204839|ENST00000398882|MROH6	MULTI-MSMS	OvCa9_classI_Rep2	2	489.3143310546875	2	489.316369	976.618185	-2.9034	-0.0014207	-1.3918	-0.00068104	-4.2952	-0.0021017	489.3155696010777	150.8	1.5265	150.57	150.17	151.7	-0.22696					77	30	4	0	0	0	0.69895	1	15293	15293		18.324	2.6882	1	380370	+		31767	23186	26132	26157	35053	35053					0.12894049676367558
LLGRVLAHV	9	Unmodified	_LLGRVLAHV_					0	0	0			REV__ENSG00000204839|ENST00000398882|MROH6	REV__ENSG00000204839|ENST00000398882|MROH6	MULTI-MSMS	OvCa9_classI_Rep3	3	489.31365966796875	2	489.316369	976.618185	-5.0625	-0.0024771	0.75357	0.00036874	-4.3089	-0.0021084	489.3166161919068	151.03	1.2523	150.08	149.76	151.01	-0.95647					68	24	4	0	0	0	0.6959	2	12837	12837;12867		19.36	3.7238	1	299480	+		31768	23186	26132	26157	35054;35055	35054					0.12894049676367558
LLGRVLAHV	9	Unmodified	_LLGRVLAHV_					0	0	0			REV__ENSG00000204839|ENST00000398882|MROH6	REV__ENSG00000204839|ENST00000398882|MROH6	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.3138427734375	2	489.316369	976.618185	-3.028	-0.0014817	-1.2985	-0.00063537	-4.3265	-0.002117	489.31563425823117	151.49	1.5662	150.06	149.67	151.24	-1.4344					103	34	4	0	0	0	0.6959	1	14963	14963		19.36	3.7238	1	763840	+		31769	23186	26132	26157	35056	35056					0.12894049676367558
LLGRWLVW	8	Unmodified	_LLGRWLVW_					0	0	0			REV__ENST00000239444.3_2_5:140557375-140557534:+|nuORF	REV__ENST00000239444.3_2_5:140557375-140557534:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.7948608398438	2	521.813462	1041.61237	0.83388	0.00043513	2.6081	0.0013609	3.4419	0.001796	521.8147107952216	86.437	2.0426	83.81	83.613	85.655	-2.6269					35	15	3	0	0	0	0.028476	1	7528	7528		29.842	1.9593	1	257870	+		31770	23821	26133	26158	35057	35057					0.09322951164699589
LLGRWLVW	8	Unmodified	_LLGRWLVW_					0	0	0			REV__ENST00000239444.3_2_5:140557375-140557534:+|nuORF	REV__ENST00000239444.3_2_5:140557375-140557534:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.813462	1041.61237	-1.3287	-0.00069335	5.9732	0.0031169	4.6445	0.0024235	521.8164577157572	85.307	0.93835	83.816	83.406	84.344	-1.4906	-0.011183	0.00052316	NaN	29.842	45	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137100	+		31771	23821	26133	26158							0.09322951164699589
LLGRWLVW	8	Unmodified	_LLGRWLVW_					0	0	0			REV__ENST00000239444.3_2_5:140557375-140557534:+|nuORF	REV__ENST00000239444.3_2_5:140557375-140557534:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	521.813462	1041.61237	-1.114	-0.00058131	6.0749	0.00317	4.9609	0.0025887	521.8164562569958	86.076	0.90089	83.856	83.486	84.387	-2.2204	0.028259	0.00062934	NaN	29.842	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242810	+		31772	23821	26133	26158							0.09322951164699589
LLGSAHEV	8	Unmodified	_LLGSAHEV_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;SPTAN1|p.Q1734Rfs*19|1|0.63|ENSG00000197694|chr9:128615697-128615725|CCAAGTAAAGGACAAGAGGGACACCATCA/-|frameshift_variant;SPTAN1|p.M1752Ifs*16|1|0.07|ENSG00000197694|chr9:128615752-128615753|-/TTCCTGAGTTCTTATG|frameshift_variant	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	OvCa99_classI_Rep5	1	413.22760009765625	2	413.226885	824.439217	0.4342	0.00017942	0.0049727	2.0549E-06	0.43917	0.00018148	413.2267486587091	55.578	1.2666	55.578	55.315	56.581	0					66	30	4	0	0	0	0.47599	1	4548	4548		79.939	16.961	1	6938200			31773	8736	26134	26159	35058	35058					0.019975403176204054
LLGSIIKMTTT	11	Unmodified	_LLGSIIKMTTT_					0	0	0			REV__tr|A0A7D6VSU8|A0A7D6VSU8_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05420PE=4SV=1	REV__tr|A0A7D6VSU8|A0A7D6VSU8_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05420PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3432006835938	2	589.346674	1176.6788	-5.1334	-0.0030254	-1.2406	-0.00073114	-6.374	-0.0037565	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.70142	1	12443	12443		29.17	0.020503	1	589610	+		31774	31540	26135	26160	35059	35059					0.09752354153761189
LLGSIIKMTTT	11	Unmodified	_LLGSIIKMTTT_					0	0	0			REV__tr|A0A7D6VSU8|A0A7D6VSU8_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05420PE=4SV=1	REV__tr|A0A7D6VSU8|A0A7D6VSU8_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05420PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.34228515625	2	589.346674	1176.6788	-2.1868	-0.0012888	-4.1682	-0.0024565	-6.355	-0.0037453	589.3441619466173	148.26	4.549	146.82	145.53	150.08	-1.435					304	95	6	0	0	0	0.70142	1	14624	14624		29.17	3.1067	1	385010	+		31775	31540	26135	26160	35060	35060					0.09752354153761189
LLGSLKAKII	10	Unmodified	_LLGSLKAKII_					0	0	0		tr|A0A7D7AG70|A0A7D7AG70_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07940PE=4SV=1	tr|A0A7D7AG70|A0A7D7AG70_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07940PE=4SV=1	tr|A0A7D7AG70|A0A7D7AG70_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07940PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	528.3643188476562	2	528.362985	1054.71142	0.60322	0.00031872	1.1054	0.00058404	1.7086	0.00090276	528.363382275887	159.06	1.8145	159.06	158.69	160.51	0					87	36	4	0	0	0	0.46756	1	18647	18647		58.782	5.4305	1	385540			31776	36261	26136	26161	35061	35061					0.1862492933894373
LLGSLVIN	8	Unmodified	_LLGSLVIN_					0	0	0			REV__ENST00000263708.6_1_2:120517455-120517605:+|nuORF	REV__ENST00000263708.6_1_2:120517455-120517605:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	414.7619934082031	2	414.763104	827.511654	-0.47497	-0.000197	-2.6059	-0.0010808	-3.0808	-0.0012778	414.761930419043	140.08	2.1671	139.86	139.4	141.57	-0.22696					123	43	4	0	0	0	0.73288	1	13982	13982		35.201	0	1	474850	+		31777	24006	26137	26162	35062	35062					0.09099874391176854
LLGSLVLLL	9	Unmodified	_LLGSLVLLL_					0	0	0			REV__ENSG00000164893|ENST00000297524|SLC7A13	REV__ENSG00000164893|ENST00000297524|SLC7A13	MULTI-MSMS	OvCa99_classI_Rep5	1	470.8265075683594	2	470.825704	939.636855	0.66106	0.00031124	-0.10183	-4.7944E-05	0.55923	0.0002633	470.82550127095874	161.06	3.0909	161.06	159.47	162.56	0					174	61	3	0	0	0	0.11842	1	18985	18985		92.191	9.8856	1	597670	+		31778	21032	26138	26163	35063	35063					0.16462166527560385
LLGSQIRIPL	10	Unmodified	_LLGSQIRIPL_					0	0	0			REV__tr|A0A553SF31|A0A553SF31_NIACIDUF871domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_08125PE=4SV=1	REV__tr|A0A553SF31|A0A553SF31_NIACIDUF871domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_08125PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	555.3533935546875	2	555.355691	1108.69683	-7.0233	-0.0039004	3.381	0.0018777	-3.6422	-0.0020227	555.3574443782504	158.85	1.8694	157.58	157.26	159.13	-1.267					85	36	5	0	0	0	0.69986	1	13709	13709		30.504	3.8107	1	417810	+		31779	29533	26139	26164	35064	35064					0.14682857190791765
LLGSTGIIIF	10	Unmodified	_LLGSTGIIIF_					0	0	0		tr|A0A7D6VS85|A0A7D6VS85_9CLOTShikimatekinaseOS=ClostridiumintestinaleOX=36845GN=aroKPE=3SV=1	tr|A0A7D6VS85|A0A7D6VS85_9CLOTShikimatekinaseOS=ClostridiumintestinaleOX=36845GN=aroKPE=3SV=1	tr|A0A7D6VS85|A0A7D6VS85_9CLOTShikimatekinaseOS=ClostridiumintestinaleOX=36845GN=aroKPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3200073242188	2	517.318243	1032.62193	0.83877	0.00043391	2.1662	0.0011206	3.005	0.0015545	517.3191831149613	112.7	1.9244	112.58	112.28	114.2	-0.12174					94	38	4	0	0	0	0.43592	1	10696	10696		63.306	13.865	1	430350			31780	34996	26140	26165	35065	35065					0.10692674659571821
LLGSVQALSFV	11	Unmodified	_LLGSVQALSFV_					0	0	0			REV__ENSG00000064687|ENST00000263094|ABCA7	REV__ENSG00000064687|ENST00000263094|ABCA7	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3292236328125	2	567.331882	1132.64921	-3.474	-0.0019709	-0.21845	-0.00012393	-3.6925	-0.0020949	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.69808	1	12108	12108		30.318	1.1477	1	458690	+		31781	16774	26141	26166	35066	35066					0.08819158199935373
LLGTEKINFV	10	Unmodified	_LLGTEKINFV_					0	0	0			REV__TIGD4|p.M191Tfs*26|1|0.14|ENSG00000169989|chr4:152770433-152770434|-/AGGTG|frameshift_variant	REV__TIGD4|p.M191Tfs*26|1|0.14|ENSG00000169989|chr4:152770433-152770434|-/AGGTG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3294067382812	2	567.331882	1132.64921	-2.3399	-0.0013275	-1.3687	-0.0007765	-3.7086	-0.002104	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.7759	1	14619	14619		21.96	1.9631	1	241060	+		31782	21505	26142	26167	35067	35067					0.08819158199935373
LLGTPIPDQKI	11	Unmodified	_LLGTPIPDQKI_					0	0	0			REV__ENSG00000162402|ENST00000294383|USP24	REV__ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8551635742188	2	597.858264	1193.70197	-3.1766	-0.0018991	0.037639	2.2503E-05	-3.1389	-0.0018766	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.72244	1	15111	15111		21.96	1.013	1	436470	+		31783	20732	26143	26168	35068	35068					0.11287116262769814
LLGTPKKSI	9	Unmodified	_LLGTPKKSI_					0	0	0			REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	REV__ENST00000563542.5_1_15:72185266-72338904:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.2911376953125	2	478.810585	955.606617	1.4959	0.00071626	-2.2703	-0.001087	-0.77434	-0.00037076	478.80954012915316	85.864	0.49982	83.218	82.993	83.493	-2.6463					15	9	2	0	0	0	0.027462	1	7239	7239		37.159	9.2769	1	29552	+		31784	16826	26144	26169	35069	35069					0.12703807862362737
LLGTTGAVRSA	11	Unmodified	_LLGTTGAVRSA_					0	0	0			REV__nc|ENSG00000164744|Q8TAQ9-3|SUN3	REV__nc|ENSG00000164744|Q8TAQ9-3|SUN3	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3031616210938	2	523.303655	1044.59276	-2.1228	-0.0011108	2.0352	0.001065	-0.087543	-4.5811E-05	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.71498	1	11375	11375		24.519	0	1	183010	+		31785	28972	26145	26170	35070	35070					0.07224530363305348
LLGVDLLRL	9	Unmodified	_LLGVDLLRL_					0	0	0		SCRN2|p.M115V|1|0.12|ENSG00000141295|chr17:47840204-47840204|T/C|missense_variant	SCRN2|p.M115V|1|0.12|ENSG00000141295|chr17:47840204-47840204|T/C|missense_variant	SCRN2|p.M115V|1|0.12|ENSG00000141295|chr17:47840204-47840204|T/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.3309631347656	2	506.331685	1010.64882	-1.2295	-0.00062251	1.1578	0.00058623	-0.071662	-3.6285E-05	506.3321412541863	124.25	1.9396	122.86	122.47	124.41	-1.3908					58	35	3	0	0	0	0.38529	1	11805	11805		53.351	0	1	86226			31786	32804	26146	26171	35071	35071					0.14391783270752967
LLGVDLLRL	9	Unmodified	_LLGVDLLRL_					0	0	0		SCRN2|p.M115V|1|0.12|ENSG00000141295|chr17:47840204-47840204|T/C|missense_variant	SCRN2|p.M115V|1|0.12|ENSG00000141295|chr17:47840204-47840204|T/C|missense_variant	SCRN2|p.M115V|1|0.12|ENSG00000141295|chr17:47840204-47840204|T/C|missense_variant	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	506.331685	1010.64882	0.91139	0.00046147	-0.75798	-0.00038379	0.15341	7.7676E-05	506.33120142616923	123.84	0.92854	122.81	122.46	123.39	-1.0377	0.086654	-0.00094272	NaN	53.351	43	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77962			31787	32804	26146	26171							0.14391783270752967
LLGVGNNLLV	10	Unmodified	_LLGVGNNLLV_					0	0	0		nc|ENSG00000203668|Q9H1Y3-2|OPN3;ENSG00000054277|ENST00000366554|OPN3	nc|ENSG00000203668|Q9H1Y3-2|OPN3	nc|ENSG00000203668|Q9H1Y3-2|OPN3	MULTI-MSMS	OvCa99_classI_Rep5	1	506.3148193359375	2	506.313492	1010.61243	-0.10029	-5.0778E-05	0.48243	0.00024426	0.38214	0.00019348	506.3136128181143	105.06	0.61461	105.06	104.79	105.4	0					32	13	3	0	0	0	0.55145	1	11801	11801		47.916	0	1	1467400			31788	1207	26147	26172	35072	35072					0.10754906374040729
LLGVGVALASL	11	Unmodified	_LLGVGVALASL_					0	0	0		TRPV3|p.F601V|1|0.62|ENSG00000167723|chr17:3520982-3520982|A/C|missense_variant	TRPV3|p.F601V|1|0.62|ENSG00000167723|chr17:3520982-3520982|A/C|missense_variant	TRPV3|p.F601V|1|0.62|ENSG00000167723|chr17:3520982-3520982|A/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.8260192871094	2	506.823692	1011.63283	-0.69897	-0.00035426	0.53341	0.00027035	-0.16556	-8.3909E-05	506.82396303678956	77.299	0.93967	75.509	75.259	76.199	-1.7894					27	17	2	0	0	0	0.025449	1	6400	6400		47.916	27.919	1	57704			31789	36285	26148	26173	35073	35073					0.1274807703384795
LLGVLKLRY	9	Unmodified	_LLGVLKLRY_					0	0	0			REV__tr|A0A7D6VTH6|A0A7D6VTH6_9CLOTM48familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09035PE=3SV=1	REV__tr|A0A7D6VTH6|A0A7D6VTH6_9CLOTM48familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09035PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.619384765625	2	537.855327	1073.6961	-0.12233	-6.5796E-05	-0.22606	-0.00012159	-0.34839	-0.00018738	537.8551023569038	60.568	0.45205	60.568	60.277	60.73	0					16	10	2	0	0	0	0.027462	1	5267	5267		25.45	1.2474	1	144940	+		31790	31604	26149	26174	35074	35074					0.16220062541742664
LLGVWILLL	9	Unmodified	_LLGVWILLL_					0	0	0		ENST00000475007.5_1_7:150500316-150501569:+|nuORF;ENSG00000002933|ENST00000004103|TMEM176A	ENST00000475007.5_1_7:150500316-150501569:+|nuORF	ENST00000475007.5_1_7:150500316-150501569:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.3117065429688	2	520.349346	1038.68414	1.5061	0.00078369	0.83179	0.00043282	2.3379	0.0012165	520.3498973136814	85.481	0.33324	85.481	85.211	85.544	0					9	7	2	0	0	0	0.027462	1	8939	8939		14.664	0	1	121500			31791	816	26150	26175	35075	35075					0.1663444579858151
LLGWAQVLL	9	Unmodified	_LLGWAQVLL_					0	0	0			REV__chr9:129282721-129282930|385|18.12|0.83|4.44|+|0|None,LINC02975|1	REV__chr9:129282721-129282930|385|18.12|0.83|4.44|+|0|None,LINC02975|1	MULTI-MSMS	OvCa9_classI_Rep2	2	506.80877685546875	2	506.813128	1011.6117	-1.1259	-0.00057063	-3.6411	-0.0018454	-4.767	-0.002416	506.81130069607957	99.678	3.3722	98.848	98.219	101.59	-0.83051					157	66	4	0	0	0	0.30002	1	9163	9163		62.978	6.2574	1	2351400	+		31792	16119	26151	26176	35076	35076					0.1063611172498895
LLGWVFIPI	9	Unmodified	_LLGWVFIPI_					0	0	0		SLC5A3|p.A278Gfs*6|1|0.05|ENSG00000198743|chr21:34096029-34096030|-/GGCAGGATCTGGA|frameshift_variant;ENSG00000198743|ENST00000381151|SLC5A3	SLC5A3|p.A278Gfs*6|1|0.05|ENSG00000198743|chr21:34096029-34096030|-/GGCAGGATCTGGA|frameshift_variant	SLC5A3|p.A278Gfs*6|1|0.05|ENSG00000198743|chr21:34096029-34096030|-/GGCAGGATCTGGA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	529.3236083984375	2	529.325871	1056.63719	-1.1676	-0.00061804	-3.0157	-0.0015963	-4.1833	-0.0022143	529.3242535974534	136.04	1.0338	134.93	134.65	135.69	-1.1076					52	20	3	0	0	0	0.42921	1	11027	11027		49.211	1.2952	1	71825			31793	8864	26152	26177	35077	35077					0.11113586247415697
LLGYCYAVH	9	Unmodified	_LLGYCYAVH_					0	0	0			REV__tr|A0A7D6VPA0|A0A7D6VPA0_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15835PE=4SV=1	REV__tr|A0A7D6VPA0|A0A7D6VPA0_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15835PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.3265380859375	2	519.757495	1037.50044	0.74609	0.00038779	-1.8705	-0.00097219	-1.1244	-0.0005844	519.7562816666556	83.481	0.59251	83.481	83.249	83.841	0					29	13	3	0	0	0	0.027462	1	8670	8670		21.702	0	1	1234100	+		31794	31236	26153	26178	35078	35078					-0.01681270974609106
LLGYKSLPL	9	Unmodified	_LLGYKSLPL_					0	0	0		ENST00000396049.4_1_2:74382388-74382565:-|nuORF	ENST00000396049.4_1_2:74382388-74382565:-|nuORF	ENST00000396049.4_1_2:74382388-74382565:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	503.27587890625	2	502.312961	1002.61137	-0.68473	-0.00034395	0.97875	0.00049164	0.29402	0.00014769	502.31340532957006	83.197	1.3684	81.599	81.167	82.535	-1.5988					63	27	3	0	0	0	0.027462	1	7145	7145		47.916	0	1	130820			31795	11308	26154	26179	35079	35079					0.11016692005136974
LLHALQER	8	Unmodified	_LLHALQER_					0	0	0		nc|ENSG00000214694|A8MVX0|ARHGEF33;ENSG00000214694|ENST00000409978|ARHGEF33	nc|ENSG00000214694|A8MVX0|ARHGEF33	nc|ENSG00000214694|A8MVX0|ARHGEF33	MULTI-SECPEP	OvCa9_classI_Rep4_	4	489.2934265136719	2	490.287808	978.561064	0.47589	0.00023332	-0.1678	-8.2269E-05	0.3081	0.00015106	490.2876043206917	60.84	2.093	57.41	56.7	58.793	-3.43					63	42	3	0	0	0	0.028476	1	4154	4154		35.618	0	1	295110			31796	9178	26155	26180	35080	35080					0.07092582399980074
LLHCLQFNVP	10	Unmodified	_LLHCLQFNVP_					0	0	0			REV__ENST00000559125.1_1_15:89011266-89011446:+|nuORF	REV__ENST00000559125.1_1_15:89011266-89011446:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	591.3721923828125	2	592.318251	1182.62195	-0.32172	-0.00019056	-2.8943	-0.0017144	-3.2161	-0.0019049	592.3163459581913	72.817	1.3895	70.33	69.984	71.373	-2.4873					64	27	3	0	0	0	0.026552	1	3485	3485		63.306	0	1	190350	+		31797	27593	26156	26181	35081	35081					0.03794351387887218
LLHDAEMEN	9	Unmodified	_LLHDAEMEN_					0	0	0		ENSG00000139263|ENST00000320743|LRIG3;nc|ENSG00000139263|Q6UXM1-2|LRIG3;ENST00000547329.1_1_12:59274357-59274618:-|nuORF	ENSG00000139263|ENST00000320743|LRIG3	ENSG00000139263|ENST00000320743|LRIG3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.8153076171875	2	536.242406	1070.47026	-1.9332	-0.0010367	-4.3142	-0.0023135	-6.2475	-0.0033502	536.2399849198464	44.627	1.2331	41.588	41.31	42.543	-3.0385					43	23	3	0	0	0	0.027462	1	2271	2271		45.952	6.6991	1	103780			31798	4759	26157	26182	35082	35082					-0.062156744304502354
LLHDEKRR	8	Unmodified	_LLHDEKRR_					0	0	0			REV__tr|A0A553SQH9|A0A553SQH9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07730PE=4SV=1	REV__tr|A0A553SQH9|A0A553SQH9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07730PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	533.811279296875	2	533.809439	1065.60433	0.87012	0.00046448	1.5018	0.00080165	2.3719	0.0012661	533.810113388829	114.03	2.0545	112.97	112.63	114.69	-1.055					91	40	3	0	0	0	0.35163	1	8406	8406		97.473	15.168	1	264940	+		31799	30630	26158	26183	35083	35083					0.07414772177276063
LLHDKFVL	8	Unmodified	_LLHDKFVL_					0	0	0			REV__ENST00000556407.5_1_14:101246096-101295426:+|nuORF	REV__ENST00000556407.5_1_14:101246096-101295426:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	491.8055114746094	2	492.797478	983.580402	-0.55003	-0.00027105	-4.094	-0.0020175	-4.644	-0.0022886	492.7955662267975	50.015	0.89349	47.221	46.983	47.877	-2.794					29	17	3	0	0	0	0.028476	1	3258	3258		44.531	0	1	22577	+		31800	26014	26159	26184	35084	35084					0.08795538690890226
LLHDPALHRY	10	Unmodified	_LLHDPALHRY_					0	0	0			REV__ENSG00000146247|ENST00000275034|PHIP	REV__ENSG00000146247|ENST00000275034|PHIP	MULTI-MSMS	OvCa99_classI_Rep5	1	412.22723388671875	3	412.22789	1233.66184	0.37355	0.00015399	-2.6218	-0.0010808	-2.2483	-0.00092681	412.22660238862477	25.11	0.35364	25.11	24.938	25.292	0					17	6	3	0	0	0	0.72142	1	528	528		28.081	5.5199	1	47595	+		31801	20002	26160	26185	35085	35085					0.05435614382827225
LLHFWKRLHLL	11	Unmodified	_LLHFWKRLHLL_					0	0	0			REV__ENST00000458659.2_2_13:45147821-45148037:-|nuORF	REV__ENST00000458659.2_2_13:45147821-45148037:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	492.9698791503906	3	492.638113	1474.89251	-4.4123	-0.0021737	-3.1846	-0.0015689	-7.597	-0.0037426	492.6364518280441	160.52	2.4825	160.29	159.35	161.83	-0.22697					136	50	4	0	0	0	0.72568	1	16350	16350		6.6596	0.65857	1	91160	+		31802	26061	26161	26186	35086	35086					0.17405867435491018
LLHHLRDAD	9	Unmodified	_LLHHLRDAD_					0	0	0			REV__ENST00000380752.9_1_13:30088641-30090288:-|nuORF	REV__ENST00000380752.9_1_13:30088641-30090288:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.7920532226562	2	545.293622	1088.57269	0.85832	0.00046804	-2.6014	-0.0014185	-1.743	-0.00095047	545.2925426920767	153.79	0.52554	153.79	153.55	154.07	0					14	10	2	0	0	0	0.027461	1	18014	18014		40.778	5.1599	1	50211	+		31803	25186	26162	26187	35087	35087					0.031947794233246896
LLHHPTFYKKI	11	Unmodified	_LLHHPTFYKKI_					0	0	0		ENST00000423554.5_1_5:154200818-154202893:-|nuORF;ENST00000524250.5_1_5:154200818-154203152:-|nuORF;nc|ENSG00000170271|Q96IV6-2|FAXDC2;ENSG00000170271|ENST00000326080|FAXDC2	ENST00000423554.5_1_5:154200818-154202893:-|nuORF	ENST00000423554.5_1_5:154200818-154202893:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.75335693359375	3	466.27484	1395.80269	0.17787	8.2935E-05	2.4325	0.0011342	2.6103	0.0012171	466.27607317685835	47.833	0.81087	44.725	44.433	45.244	-3.1077					19	15	2	0	0	0	0.025818	1	2570	2570		29.551	6.9892	1	23942			31804	7088	26163	26188	35088	35088					0.12062193036240387
LLHIGLKESLL	11	Unmodified	_LLHIGLKESLL_					0	0	0		ENST00000558211.2_1_15:89678864-89678927:-|nuORF	ENST00000558211.2_1_15:89678864-89678927:-|nuORF	ENST00000558211.2_1_15:89678864-89678927:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	413.23974609375	3	412.595579	1234.76491	0.74581	0.00030772	-2.8784	-0.0011876	-2.1326	-0.00087991	412.59436165071656	64.569	0.73969	61.844	61.441	62.181	-2.7245					21	13	2	0	0	0	0.026068	1	4909	4909		27.644	4.266	1	12957			31805	13696	26164	26189	35089	35089					0.15691682050805866
LLHILTDADP	10	Unmodified	_LLHILTDADP_					0	0	0		nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-4|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-3|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-2|NCKIPSD;ENSG00000213672|ENST00000294129|NCKIPSD	nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD	nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD	MULTI-SECPEP	OvCa9_classI_Rep3	3	554.8231811523438	2	554.305864	1106.59717	-1.0913	-0.00060494	1.3236	0.00073366	0.23221	0.00012872	554.3066777081453	101.99	1.2018	100.46	100.06	101.26	-1.5211					39	22	2	0	0	0	0.026871	1	6949	6949		21.96	0	1	64549			31806	9140	26165	26190	35090	35090					0.04813994786195508
LLHKCDNIY	9	Carbamidomethyl (C)	_LLHKC(Carbamidomethyl (C))DNIY_	LLHKC(1)DNIY		LLHKC(110)DNIY		0	1	0			REV__ENST00000266673.9_1_12:72080537-72083374:+|nuORF	REV__ENST00000266673.9_1_12:72080537-72083374:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	588.2982177734375	2	588.297516	1174.58048	-2.3041	-0.0013555	2.0946	0.0012322	-0.20949	-0.00012324	588.2986423861071	87.392	1.5321	85.216	84.884	86.416	-2.1768					86	29	5	0	0	0	0.068524	2	5250	5250;5263		108.09	14.944	1	1241900	+		31807	24044	26166	26191	35091;35092	35091	282				0.00017170628575513547
LLHKCDPP	8	Unmodified	_LLHKCDPP_					0	0	0		nc|ENSG00000179709|Q86W28-2|NLRP8;ENSG00000179709|ENST00000291971|NLRP8	nc|ENSG00000179709|Q86W28-2|NLRP8	nc|ENSG00000179709|Q86W28-2|NLRP8	MULTI-MSMS	OvCa9_classI_Rep2	2	461.7442932128906	2	461.744388	921.474223	-0.88757	-0.00040983	1.9391	0.00089538	1.0516	0.00048555	461.7451389147258	116.15	1.4848	116.04	115.64	117.12	-0.11777					63	29	3	0	0	0	0.66704	2	11095	11095;11113		50.025	2.2354	1	230030			31808	7838	26167	26192	35093;35094	35093					0.010344598539063554
LLHKCDPP	8	Unmodified	_LLHKCDPP_					0	0	0		nc|ENSG00000179709|Q86W28-2|NLRP8;ENSG00000179709|ENST00000291971|NLRP8	nc|ENSG00000179709|Q86W28-2|NLRP8	nc|ENSG00000179709|Q86W28-2|NLRP8	MULTI-MSMS	OvCa9_classI_Rep3	3	461.74566650390625	2	461.744388	921.474223	-0.83419	-0.00038518	1.8288	0.00084442	0.99457	0.00045924	461.74511648930593	116.8	1.6831	115.76	115.49	117.17	-1.0414					73	33	4	0	0	0	0.66704	1	8740	8740		50.025	0.58299	1	334790			31809	7838	26167	26192	35095	35095					0.010344598539063554
LLHKQRLLFS	10	Unmodified	_LLHKQRLLFS_					0	0	0		ENST00000478307.5_1_1:147400580-147440603:+|nuORF;nc|ENSG00000188092|B7ZAQ6-3|GPR89A;ENSG00000188092|ENST00000314163|GPR89B;ENSG00000117262|ENST00000313835|GPR89A	ENST00000478307.5_1_1:147400580-147440603:+|nuORF	ENST00000478307.5_1_1:147400580-147440603:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	418.9267578125	3	418.927552	1253.76083	-0.84863	-0.00035552	0.6615	0.00027712	-0.18714	-7.8398E-05	418.927810716126	104.15	2.7626	102.03	101.64	104.4	-2.1192					150	53	5	0	0	0	0.762	1	9401	9401		23.523	0	1	1181400			31810	3246	26168	26193	35096	35096					0.1440963734773959
LLHKSLCV	8	Unmodified	_LLHKSLCV_					0	0	0			REV__ENST00000515834.1_1_5:180651698-180652007:+|nuORF	REV__ENST00000515834.1_1_5:180651698-180652007:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.77252197265625	2	456.770406	911.526258	0.021393	9.7715E-06	4.1863	0.0019122	4.2077	0.001922	456.772221860438	143.17	2.3082	141.72	140.94	143.25	-1.4427					127	44	4	0	0	0	0.72922	1	14058	14058		37.028	5.0736	1	669650	+		31811	27008	26169	26194	35097	35097					0.06695623267671635
LLHKVKLGTT	10	Unmodified	_LLHKVKLGTT_					0	0	0			REV__ENSG00000152104|ENST00000366956|PTPN14	REV__ENSG00000152104|ENST00000366956|PTPN14	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.3536987304688	2	555.355691	1108.69683	-5.7234	-0.0031785	1.8077	0.0010039	-3.9157	-0.0021746	555.3566390635189	159.36	1.8651	157.77	157.41	159.27	-1.5858					127	42	5	0	0	0	0.73378	1	15785	15785		26.693	4.733	1	1093300	+		31812	20270	26170	26195	35098	35098					0.14682857190791765
LLHLCLVLL	9	Unmodified	_LLHLCLVLL_					0	0	0		ENSG00000126838|ENST00000261336|PZP;PZP|p.P734Lfs*15|1|0.03|ENSG00000126838|chr12:9166079-9166110|GTCTCAGGAAAATAGCTTCGCACCGTTTCAGG/-|frameshift_variant;PZP|p.L50Sfs*6|1|0.04|ENSG00000126838|chr12:9203888-9203889|-/T|frameshift_variant	ENSG00000126838|ENST00000261336|PZP	ENSG00000126838|ENST00000261336|PZP	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.2760009765625	2	518.833006	1035.65146	0.42192	0.0002189	2.4402	0.001266	2.8621	0.0014849	518.8337359884295	79.015	0.62528	77.275	77.097	77.722	-1.7398					14	11	2	0	0	0	0.027462	1	6607	6607		14.664	0	1	12441			31813	3805	26171	26196	35099	35099					0.13505915404039115
LLHLGSLSP	9	Unmodified	_LLHLGSLSP_					0	0	0		ENSG00000151148|ENST00000342494|UBE3B;nc|ENSG00000151148|Q7Z3V4-2|UBE3B	ENSG00000151148|ENST00000342494|UBE3B	ENSG00000151148|ENST00000342494|UBE3B	MULTI-SECPEP	OvCa9_classI_Rep3	3	469.25421142578125	2	468.779285	935.544017	-0.84944	-0.0003982	1.1021	0.00051666	0.2527	0.00011846	468.7796899152216	86.131	1.4075	83.911	83.636	85.043	-2.2204					45	27	3	0	0	0	0.027441	1	5135	5135		45.952	5.3793	1	87295			31814	5536	26172	26197	35100	35100					0.07366661794185347
LLHLIWLI	8	Unmodified	_LLHLIWLI_					0	0	0			REV__nc|ENSG00000170088|Q8IY95-2|TMEM192	REV__nc|ENSG00000170088|Q8IY95-2|TMEM192	MULTI-MSMS	OvCa9_classI_Rep2	2	510.8316345214844	2	510.833863	1019.65317	-1.2892	-0.00065856	-3.0513	-0.0015587	-4.3405	-0.0022173	510.8322085599463	120.24	1.0851	120.06	119.79	120.88	-0.17138					40	21	2	0	0	0	0.69862	1	11605	11605		43.626	3.0534	1	218730	+		31815	21514	26173	26198	35101	35101					0.14413292484312024
LLHLLLPSL	9	Unmodified	_LLHLLLPSL_					0	0	0		ENSG00000178026|ENST00000318753|LRRC75B;ENST00000491910.5_1_22:24981856-24984399:-|nuORF;ENST00000446942.5_1_22:24981856-24984799:-|nuORF	ENSG00000178026|ENST00000318753|LRRC75B	ENSG00000178026|ENST00000318753|LRRC75B	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.271484375	2	509.836603	1017.65865	1.6466	0.00083947	0.39752	0.00020267	2.0441	0.0010421	509.8365468790568	92.365	0.41985	92.365	92.174	92.594	0					18	9	2	0	0	0	0.027462	1	10009	10009		33.516	6.7195	1	275550			31816	7727	26174	26199	35102	35102					0.15052971276122662
LLHLLRHVLL	10	Unmodified	_LLHLLRHVLL_					0	0	0		L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|276|2|anti-sense	L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|276|2|anti-sense	L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|276|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	409.6075439453125	3	409.608042	1225.8023	0.55096	0.00022568	-0.83061	-0.00034023	-0.27965	-0.00011455	409.60762934156605	108.64	8.1164	106.92	106.42	114.53	-1.7256					461	158	5	0	0	0	0.5675	1	10284	10284		45.972	5.9141	1	863570			31817	14742	26175	26200	35103	35103					0.1984281810707671
LLHLQPQDP	9	Unmodified	_LLHLQPQDP_					0	0	0		ENST00000470354.1_1_7:100275158-100275287:+|nuORF	ENST00000470354.1_1_7:100275158-100275287:+|nuORF	ENST00000470354.1_1_7:100275158-100275287:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.8101196289062	2	530.792924	1059.57129	-0.4695	-0.00024921	1.3751	0.00072991	0.90562	0.0004807	530.7942172372435	81.641	0.65129	79.318	78.957	79.608	-2.3226					21	12	3	0	0	0	0.027426	1	4520	4520		44.117	0	1	66886			31818	12364	26176	26201	35104	35104					0.04389145334539535
LLHMQFVDI	9	Unmodified	_LLHMQFVDI_					0	0	0		tr|A0A553SMY5|A0A553SMY5_NIACIGlutaminesynthetaseOS=NialliacirculansOX=1397GN=CEQ21_23430PE=3SV=1	tr|A0A553SMY5|A0A553SMY5_NIACIGlutaminesynthetaseOS=NialliacirculansOX=1397GN=CEQ21_23430PE=3SV=1	tr|A0A553SMY5|A0A553SMY5_NIACIGlutaminesynthetaseOS=NialliacirculansOX=1397GN=CEQ21_23430PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	558.296142578125	2	558.299527	1114.5845	2.7795	0.0015518	-0.77027	-0.00043004	2.0092	0.0011218	558.2991109211848	108.13	2.0948	108.13	107.9	110	0					107	47	3	0	0	0	0.22961	1	12198	12198		71.296	2.5089	1	33414000			31819	33885	26177	26202	35105	35105					0.031792601223060046
LLHPAPHLN	9	Unmodified	_LLHPAPHLN_					0	0	0			REV__ENSG00000125931|ENST00000651998|CITED1	REV__ENSG00000125931|ENST00000651998|CITED1	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.3411560058594	2	506.290351	1010.56615	-1.1314	-0.00057283	-0.29969	-0.00015173	-1.4311	-0.00072456	506.29030095881217	134.42	0.44461	133.3	133.11	133.55	-1.1226					13	8	2	0	0	0	0.027462	1	10862	10862		33.516	3.674	1	14962	+		31820	18760	26178	26203	35106	35106					0.06128886262592914
LLHPEEKKL	9	Unmodified	_LLHPEEKKL_					0	0	0			REV__nc|ENSG00000130038|Q9BSW2-1|CRACR2A	REV__nc|ENSG00000130038|Q9BSW2-1|CRACR2A	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8301391601562	2	553.832049	1105.64954	-2.2198	-0.0012294	-1.4062	-0.0007788	-3.626	-0.0020082	553.8311075714116	139.08	3.9663	138.02	135.98	139.95	-1.0595					202	80	4	0	0	0	0.51865	1	11445	11445		40.778	2.9666	1	74733	+		31821	18918	26179	26204	35107	35107					0.10094577919812764
LLHPHPQQEGL	11	Unmodified	_LLHPHPQQEGL_					0	0	0			REV__nc|ENSG00000204396|Q9Y334-2|VWA7	REV__nc|ENSG00000204396|Q9Y334-2|VWA7	MULTI-SECPEP	OvCa99_classI_Rep5	1	634.2947998046875	2	634.840936	1267.66732	2.4243	0.001539	-3.8099	-0.0024187	-1.3856	-0.00087966	635.3407631817208	100.29	0.41986	100.29	100.15	100.57	0					13	9	2	0	0	0	0.025909	1	11142	11142		26.693	0	1	333480	+		31822	23152	26180	26205	35108	35108					0.04419293174669292
LLHPLGPL	8	Unmodified	_LLHPLGPL_					0	0	0			REV__GPR68|p.Q206Vfs*133|1|0.06|ENSG00000119714|chr14:91234435-91234436|-/GTAGGAC|frameshift_variant	REV__GPR68|p.Q206Vfs*133|1|0.06|ENSG00000119714|chr14:91234435-91234436|-/GTAGGAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	430.27386474609375	2	430.273638	858.532724	-0.29706	-0.00012782	0.34891	0.00015013	0.051854	2.2311E-05	430.27363198332677	107.54	1.9628	107.24	106.57	108.54	-0.30836					111	39	5	0	0	0	0.69862	1	10061	10061		43.626	10.133	1	399440	+		31823	28164	26181	26206	35109	35109					0.09779884490706081
LLHPLPPSAD	10	Unmodified	_LLHPLPPSAD_					0	0	0		ENSG00000169246|ENST00000542817|NPIPB3;nc|ENSG00000169246|Q92617-2|NPIPB3;nc|ENSG00000169246|Q92617-3|NPIPB3;nc|ENSG00000169246|Q92617-5|NPIPB3;ENSG00000169203|ENST00000550665|NPIPB12;nc|ENSG00000169246|Q92617-6|NPIPB3;nc|ENSG00000169246|Q92617|NPIPB3;ENSG00000243716|ENST00000424340|NPIPB5;nc|ENSG00000243716|C9JG80|NPIPB4;ENSG00000198064|ENST00000697092|NPIPB13;ENSG00000254206|ENST00000698511|NPIPB11;ENSG00000185864|ENST00000682606|NPIPB4	ENSG00000169246|ENST00000542817|NPIPB3	ENSG00000169246|ENST00000542817|NPIPB3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.795166015625	2	530.295299	1058.57605	-1.259	-0.00066764	4.1262	0.0021881	2.8672	0.0015205	530.2974371697999	104.52	0.89193	102.4	101.85	102.74	-2.1192					23	16	2	0	0	0	0.026697	1	9468	9468		45.952	3.5558	1	94607			31824	6986	26182	26207	35110	35110					0.049100294773325004
LLHPRFEC	8	Unmodified	_LLHPRFEC_					0	0	0			REV__MER102a_dup1502|chrX:74266770-74267057:-|1.0689501722773544|0.3545922750322085|1.59|429.0|20|2|anti-sense	REV__MER102a_dup1502|chrX:74266770-74267057:-|1.0689501722773544|0.3545922750322085|1.59|429.0|20|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7653503417969	2	507.763112	1013.51167	3.7042	0.0018808	2.7835	0.0014134	6.4876	0.0032942	507.76435878537296	132.17	1.6916	130.67	129.94	131.63	-1.5015					93	33	4	0	0	0	0.73938	1	12771	12771		31.955	0	1	152800	+		31825	28648	26183	26208	35111	35111					0.005455511195350482
LLHPSPLA	8	Unmodified	_LLHPSPLA_					0	0	0		ENST00000393640.8_1_16:70414628-70415099:-|nuORF	ENST00000393640.8_1_16:70414628-70415099:-|nuORF	ENST00000393640.8_1_16:70414628-70415099:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	424.2554931640625	2	424.255446	846.496338	2.4018	0.001019	0.19293	8.1851E-05	2.5947	0.0011008	424.25536772999465	99.76	0.95662	99.76	99.488	100.44	0					35	22	3	0	0	0	0.69415	1	11028	11028		44.531	0	1	1224100			31826	11252	26184	26209	35112	35112					0.06695007593987157
LLHRKTPL	8	Unmodified	_LLHRKTPL_					0	0	0			REV__ENSG00000167716|ENST00000409644|WDR81	REV__ENSG00000167716|ENST00000409644|WDR81	MULTI-MSMS	OvCa9_classI_Rep3	3	489.31353759765625	2	489.316369	976.618185	-5.0625	-0.0024771	0.75357	0.00036874	-4.3089	-0.0021084	489.3166161919068	151.03	1.2523	150.08	149.76	151.01	-0.95647					68	24	4	0	0	0	0.75915	1	12853	12853		20.482	0	1	299480	+		31827	21303	26185	26210	35113	35113					0.12894049676367558
LLHRLKLTSCV	11	Unmodified	_LLHRLKLTSCV_					0	0	0		ENST00000336314.8_2_5:154194701-154194878:+|nuORF	ENST00000336314.8_2_5:154194701-154194878:+|nuORF	ENST00000336314.8_2_5:154194701-154194878:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8819580078125	2	641.886832	1281.75911	-4.6434	-0.0029805	-1.9733	-0.0012666	-6.6167	-0.0042472	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.71498	1	15608	15608		24.519	0	1	543390			31828	10510	26186	26211	35114	35114					0.12950260267462
LLHRLPAP	8	Unmodified	_LLHRLPAP_					0	0	0			REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF	REV__ENST00000281961.2_1_2:39893203-39931290:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.7881774902344	2	458.789987	915.565421	-2.1404	-0.00098197	-2.399	-0.0011007	-4.5394	-0.0020826	458.78877967166295	148.29	2.0994	146.85	146.22	148.32	-1.435					112	42	4	0	0	0	0.75991	1	14699	14699		21.702	0	1	1351300	+		31829	24119	26187	26212	35115	35115					0.10426091613544486
LLHRNLVL	8	Unmodified	_LLHRNLVL_					0	0	0		ENSG00000172732|ENST00000308110|MUS81	ENSG00000172732|ENST00000308110|MUS81	ENSG00000172732|ENST00000308110|MUS81	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.3136291503906	2	489.316369	976.618185	-3.028	-0.0014817	-1.2985	-0.00063537	-4.3265	-0.002117	489.31563425823117	151.49	1.5662	150.06	149.67	151.24	-1.4344					103	34	4	0	0	0	0.75915	1	14954	14954		20.482	0	1	763840			31830	7315	26188	26213	35116	35116					0.12894049676367558
LLHRWVAAV	9	Unmodified	_LLHRWVAAV_					0	0	0			REV__ENSG00000198326|ENST00000380585|TMEM239	REV__ENSG00000198326|ENST00000380585|TMEM239	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.34912109375	2	532.821818	1063.62908	-2.0318	-0.0010826	-0.03912	-2.0844E-05	-2.0709	-0.0011034	532.8215422338473	95.218	0.8013	92.75	92.46	93.262	-2.4685					22	15	2	0	0	0	0.027462	1	8344	8344		25.45	0	1	39466	+		31831	23010	26189	26214	35117	35117					0.09981452050624284
LLHSDYLL	8	Unmodified	_LLHSDYLL_					0	0	0			REV__HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|105|3|sense	REV__HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|105|3|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	487.270751953125	2	487.271293	972.528032	1.9046	0.00092805	-4.1296	-0.0020122	-2.225	-0.0010842	487.269303684088	82.119	0.86609	82.119	81.613	82.479	0					45	20	4	0	0	0	0.64377	1	8510	8510		54.765	1.4132	1	2364800	+		31832	28227	26190	26215	35118	35118					0.04066955557277652
LLHSLDQSI	9	Unmodified	_LLHSLDQSI_					0	0	0		ENSG00000144554|ENST00000675286|FANCD2;nc|ENSG00000144554|Q9BXW9-1|FANCD2;nc|ENSG00000144554|Q9BXW9-3|FANCD2;FANCD2|p.S452P|1|0.08|ENSG00000144554|chr3:10047992-10047992|T/C|missense_variant	ENSG00000144554|ENST00000675286|FANCD2	ENSG00000144554|ENST00000675286|FANCD2	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.2858276367188	2	513.284931	1024.55531	-1.8397	-0.00094427	1.3318	0.00068359	-0.50787	-0.00026068	513.2854532070569	88.53	1.2933	85.927	85.629	86.922	-2.6027					65	25	3	0	0	0	0.14998	1	7563	7563		84.916	0	1	389340			31833	5157	26191	26216	35119	35119					0.04401439097682669
LLHSLRIL	8	Unmodified	_LLHSLRIL_					0	0	0			REV__nc|ENSG00000136270|Q969Z0-2|TBRG4	REV__nc|ENSG00000136270|Q969Z0-2|TBRG4	MULTI-MSMS	OvCa99_classI_Rep5	1	482.8202209472656	2	482.818744	963.622936	2.4991	0.0012066	0.11874	5.733E-05	2.6178	0.0012639	482.8186591581218	94.731	0.97618	94.731	94.475	95.451	0					41	22	3	0	0	0	0.69415	1	10320	10320		44.531	0	1	1121800	+		31834	19373	26192	26217	35120	35120					0.139669338191311
LLHSLRIL	8	Unmodified	_LLHSLRIL_					0	0	0			REV__nc|ENSG00000136270|Q969Z0-2|TBRG4	REV__nc|ENSG00000136270|Q969Z0-2|TBRG4	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	482.818744	963.622936	2.4991	0.0012066	0.11874	5.733E-05	2.6178	0.0012639	482.8186591581218	94.731	0.97618	94.731	94.475	95.451	0	0	0	NaN	44.531	41	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1121800	+		31835	19373	26192	26217							0.139669338191311
LLHTVTSIL	9	Unmodified	_LLHTVTSIL_					0	0	0		ENST00000492264.1_1_7:65615923-65617341:+|nuORF;nc|ENSG00000241258|O75575-4|CRCP;nc|ENSG00000241258|O75575-2|CRCP;nc|ENSG00000241258|O75575-3|CRCP;ENSG00000241258|ENST00000395326|CRCP	ENST00000492264.1_1_7:65615923-65617341:+|nuORF	ENST00000492264.1_1_7:65615923-65617341:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.34283447265625	2	498.808042	995.601532	2.0843	0.0010397	3.5223	0.001757	5.6066	0.0027966	498.809684870616	137.45	0.57376	137.45	137.21	137.78	0					21	11	3	0	0	0	0.027462	1	16055	16055		42.474	8.9589	1	104010			31836	9351	26193	26218	35121	35121					0.1035550399976728
LLHTWVNVVE	10	Unmodified	_LLHTWVNVVE_					0	0	0			REV__ENSG00000170915|ENST00000442253|PAQR8	REV__ENSG00000170915|ENST00000442253|PAQR8	MULTI-MSMS	OvCa99_classI_Rep5	1	605.3373413085938	2	605.334956	1208.65536	1.3064	0.00079083	0.90862	0.00055002	2.215	0.0013408	605.3355227759525	155.78	0.71515	155.78	155.43	156.14	0					34	13	3	0	0	0	0.58667	1	18247	18247		39.253	14.734	1	138460	+		31837	21574	26194	26219	35122	35122					0.0593767643144929
LLHVLTLSF	9	Unmodified	_LLHVLTLSF_					0	0	0		ENSG00000183840|ENST00000329321|GPR39	ENSG00000183840|ENST00000329321|GPR39	ENSG00000183840|ENST00000329321|GPR39	MULTI-MSMS	OvCa9_classI_Rep3	3	521.8177490234375	2	521.81841	1041.62227	-0.45682	-0.00023838	-0.41175	-0.00021486	-0.86857	-0.00045324	521.8180401068441	115.68	1.6294	114.63	114.11	115.74	-1.0414					71	32	3	0	0	0	0.39645	3	8608	8592;8596;8608		52.299	9.8247	1	346620			31838	8117	26195	26220	35123;35124;35125	35125					0.1031209437940106
LLIAEMSST	9	Oxidation (M)	_LLIAEM(Oxidation (M))SST_		LLIAEM(1)SST		LLIAEM(48)SST	0	0	1		ENSG00000114491|ENST00000232607|UMPS;nc|ENSG00000114491|P11172-2|UMPS;nc|ENSG00000114491|P11172-3|UMPS	ENSG00000114491|ENST00000232607|UMPS	ENSG00000114491|ENST00000232607|UMPS	MULTI-MSMS	OvCa99_classI_Rep5	1	490.7535400390625	2	490.752075	979.489598	1.7592	0.00086332	0.92722	0.00045504	2.6864	0.0013184	490.7523790097712	134.19	0.60651	134.19	133.91	134.52	0					28	12	3	0	0	0	0.44294	1	15629	15629		47.916	10.756	1	484570			31839	3024	26196	26221	35126	35126		96			-0.0009671813952536468
LLIALGVLADR	11	Unmodified	_LLIALGVLADR_					0	0	0			REV__ENSG00000178295|ENST00000381254|GEN1	REV__ENSG00000178295|ENST00000381254|GEN1	MULTI-MSMS	OvCa9_classI_Rep2	2	577.3681640625	2	577.368798	1152.72304	-0.0015386	-8.8833E-07	-0.31024	-0.00017912	-0.31177	-0.00018001	577.368591979319	125.62	1.9266	125.38	125.01	126.94	-0.2359					114	38	5	0	0	0	0.40225	2	12243	12243;12249		60.972	13.315	1	983740	+		31840	22054	26197	26222	35127;35128	35127					0.1527912636227029
LLIALLRSP	9	Unmodified	_LLIALLRSP_					0	0	0			REV__ENST00000510359.1_1_5:106716958-106724204:-|nuORF	REV__ENST00000510359.1_1_5:106716958-106724204:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.33392333984375	2	498.334227	994.653902	0.2425	0.00012085	-0.5271	-0.00026267	-0.2846	-0.00014182	498.33387359588454	132.52	1.8753	132.29	131.93	133.81	-0.22696					110	37	5	0	0	0	0.24951	1	13096	13096		68.787	4.5796	1	948910	+		31841	22425	26198	26223	35129	35129					0.15636087133373167
LLIAQHKLVD	10	Unmodified	_LLIAQHKLVD_					0	0	0			REV__ENSG00000066279|ENST00000367409|ASPM	REV__ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.3204956054688	2	575.353148	1148.69174	-0.08937	-5.1419E-05	-0.42022	-0.00024177	-0.50959	-0.00029319	575.3529759474397	57.352	0.34158	57.352	57.18	57.522	0					10	7	2	0	0	0	0.027056	1	4810	4810		20.947	14.211	1	120630	+		31842	16812	26199	26224	35130	35130					0.1233455332817357
LLIARVAPI	9	Unmodified	_LLIARVAPI_					0	0	0			REV__tr|A0A553SHK6|A0A553SHK6_NIACIHD-GYPdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13160PE=4SV=1	REV__tr|A0A553SHK6|A0A553SHK6_NIACIHD-GYPdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13160PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.318115234375	2	483.328945	964.643337	0.10046	4.8556E-05	-0.42442	-0.00020513	-0.32396	-0.00015658	483.3284842140818	115.84	0.64316	114.44	114.17	114.81	-1.3977					21	12	2	0	0	0	0.027449	1	10834	10834		40.573	15.122	1	15833	+		31843	29810	26200	26225	35131	35131					0.1596010447893832
LLIAVSTFIV	10	Unmodified	_LLIAVSTFIV_					0	0	0		tr|A0A553SLL0|A0A553SLL0_NIACICidA/LrgAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20885PE=4SV=1	tr|A0A553SLL0|A0A553SLL0_NIACICidA/LrgAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20885PE=4SV=1	tr|A0A553SLL0|A0A553SLL0_NIACICidA/LrgAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20885PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	538.7879638671875	2	538.341718	1074.66888	-1.5841	-0.00085279	-1.6139	-0.00086883	-3.198	-0.0017216	538.3407458921918	48.863	1.0421	46.103	45.629	46.671	-2.7603					33	20	2	0	0	0	0.027117	1	3090	3090		16.473	3.514	1	34858			31844	33737	26201	26226	35132	35132					0.13453534210680118
LLIDDRVV	8	Unmodified	_LLIDDRVV_					0	0	0			REV__nc|ENSG00000103995|O94986-1|CEP152	REV__nc|ENSG00000103995|O94986-1|CEP152	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.78448486328125	2	471.784567	941.554582	0.15918	7.5099E-05	-0.23736	-0.00011198	-0.078177	-3.6883E-05	471.78441335672056	121.07	0.86316	119.72	119.49	120.36	-1.3479					33	16	3	0	0	0	0.52992	1	11406	11406		74.517	13.545	1	79354	+		31845	17639	26202	26227	35133	35133					0.0814664444861819
LLIDDRVV	8	Unmodified	_LLIDDRVV_					0	0	0			REV__nc|ENSG00000103995|O94986-1|CEP152	REV__nc|ENSG00000103995|O94986-1|CEP152	MULTI-MATCH	OvCa9_classI_Rep2	2		2	471.784567	941.554582	-1.4158	-0.00066797	1.4517	0.00068489	0.035882	1.6929E-05	471.78520372516186	119.97	0.74068	119.8	119.59	120.34	-0.17138	0.074843	0.0014329	NaN	74.517	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33844	+		31846	17639	26202	26227							0.0814664444861819
LLIDDRVV	8	Unmodified	_LLIDDRVV_					0	0	0			REV__nc|ENSG00000103995|O94986-1|CEP152	REV__nc|ENSG00000103995|O94986-1|CEP152	MULTI-MATCH	OvCa9_classI_Rep3	3		2	471.784567	941.554582	1.7523	0.00082669	-2.1641	-0.001021	-0.41181	-0.00019428	471.7834741170713	120.68	0.81277	119.65	119.46	120.27	-1.0271	-0.068921	-0.0019789	NaN	74.517	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45816	+		31847	17639	26202	26227							0.0814664444861819
LLIDDRVV	8	Unmodified	_LLIDDRVV_					0	0	0			REV__nc|ENSG00000103995|O94986-1|CEP152	REV__nc|ENSG00000103995|O94986-1|CEP152	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	471.784567	941.554582	0.15918	7.5099E-05	-0.23736	-0.00011198	-0.078177	-3.6883E-05	471.78441335672056	121.07	0.86316	119.72	119.49	120.36	-1.3479	-0.0059221	-0.00016087	NaN	74.517	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79354	+		31848	17639	26202	26227							0.0814664444861819
LLIDLKLSV	9	Unmodified	_LLIDLKLSV_					0	0	0		tr|A0A7D6ZET1|A0A7D6ZET1_9CLOTDUF4364familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14935PE=4SV=1	tr|A0A7D6ZET1|A0A7D6ZET1_9CLOTDUF4364familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14935PE=4SV=1	tr|A0A7D6ZET1|A0A7D6ZET1_9CLOTDUF4364familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14935PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.3341064453125	2	507.333893	1012.65323	3.1355	0.0015908	-3.2387	-0.0016431	-0.10321	-5.2364E-05	507.3321696859889	133.54	1.2283	132.02	131.76	132.98	-1.5257					58	24	3	0	0	0	0.2077	1	12890	12890		75.043	1.0686	1	121720			31849	35488	26203	26228	35134	35134					0.14741247693666537
LLIDLKLSV	9	Unmodified	_LLIDLKLSV_					0	0	0		tr|A0A7D6ZET1|A0A7D6ZET1_9CLOTDUF4364familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14935PE=4SV=1	tr|A0A7D6ZET1|A0A7D6ZET1_9CLOTDUF4364familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14935PE=4SV=1	tr|A0A7D6ZET1|A0A7D6ZET1_9CLOTDUF4364familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14935PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	507.333893	1012.65323	0.1741	8.8329E-05	-0.25195	-0.00012782	-0.077847	-3.9494E-05	507.33372354219205	132.23	1.3779	132	131.74	133.11	-0.22696	-0.047985	0.00065775	NaN	75.043	53	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93837			31850	35488	26203	26228							0.14741247693666537
LLIDLKLSV	9	Unmodified	_LLIDLKLSV_					0	0	0		tr|A0A7D6ZET1|A0A7D6ZET1_9CLOTDUF4364familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14935PE=4SV=1	tr|A0A7D6ZET1|A0A7D6ZET1_9CLOTDUF4364familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14935PE=4SV=1	tr|A0A7D6ZET1|A0A7D6ZET1_9CLOTDUF4364familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14935PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	507.333893	1012.65323	-0.79428	-0.00040297	0.69853	0.00035439	-0.095754	-4.8579E-05	507.3342389610625	133.26	1.3258	132.13	131.83	133.16	-1.1249	0.082517	0.0016222	NaN	75.043	54	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58594			31851	35488	26203	26228							0.14741247693666537
LLIDTLQKD	9	Unmodified	_LLIDTLQKD_					0	0	0			REV__ENST00000584519.5_1_17:15881363-15902918:-|nuORF	REV__ENST00000584519.5_1_17:15881363-15902918:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	529.8097534179688	2	529.808239	1057.60193	-0.50017	-0.00026499	0.17125	9.0729E-05	-0.32892	-0.00017427	529.8081448658007	81.247	2.3145	78.925	78.44	80.755	-2.3226					139	45	5	0	0	0	0.46377	1	4513	4513		45.952	7.1458	1	2361100	+		31852	23303	26204	26229	35135	35135					0.07542878928961727
LLIEEPTDNP	10	Unmodified	_LLIEEPTDNP_					0	0	0			REV__ENSG00000072133|ENST00000262752|RPS6KA6	REV__ENSG00000072133|ENST00000262752|RPS6KA6	MULTI-MSMS	OvCa99_classI_Rep5	1	570.7931518554688	2	570.792786	1139.57102	0.80101	0.00045721	-3.3565	-0.0019159	-2.5555	-0.0014587	570.7907939375929	139.97	0.65698	139.97	139.51	140.17	0					22	13	2	0	0	0	0.55359	1	16342	16342		47.657	3.2801	1	87910	+		31853	16912	26205	26230	35136	35136					0.0068168082405009045
LLIELTGETL	10	Unmodified	_LLIELTGETL_					0	0	0			REV__ENST00000465181.1_1_3:38170823-38175531:-|nuORF	REV__ENST00000465181.1_1_3:38170823-38175531:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	550.3357543945312	2	551.323722	1100.63289	1.158	0.00063845	-1.9316	-0.0010649	-0.77358	-0.00042649	551.322270001974	66.419	0.94391	63.723	63.467	64.411	-2.6958					38	18	3	0	0	0	0.026635	1	5189	5189		39.253	2.8061	1	127360	+		31854	26166	26206	26231	35137	35137					0.08660032243187743
LLIEMAEAKVK	11	Unmodified	_LLIEMAEAKVK_					0	0	0			REV__ENSG00000123352|ENST00000552918|SPATS2	REV__ENSG00000123352|ENST00000552918|SPATS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.2301330566406	3	415.580941	1243.72099	0.21122	8.7781E-05	0.39855	0.00016563	0.60977	0.00025341	415.5811833467797	38.582	0.31305	38.582	38.348	38.661	0					9	6	2	0	0	0	0.025995	1	2189	2189		23.378	8.0448	1	26621	+		31855	18635	26207	26232	35138	35138					0.10888329562135368
LLIENVASL	9	Unmodified	_LLIENVASL_					0	0	0		ENST00000419783.1_2_3:49395567-49395990:-|nuORF;nc|ENSG00000233276|P07203-2|GPX1;ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13397321-13397372:-|nuORF	ENST00000419783.1_2_3:49395567-49395990:-|nuORF	ENST00000419783.1_2_3:49395567-49395990:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	486.2935485839844	2	486.292225	970.569897	1.8181	0.00088411	0.26035	0.00012661	2.0784	0.0010107	486.2922784489875	134.34	3.4861	134.34	133.72	137.21	0					179	74	5	0	0	0	7.7893E-07	9	15632	15609;15632;15656;15682;15708;15733;15757;15843;15865		258.1	86.066	1	13018000			31856	11656	26208	26233	35139;35140;35141;35142;35143;35144;35145;35146;35147	35140					0.08343511245811897
LLIENVASL	9	Unmodified	_LLIENVASL_					0	0	0		ENST00000419783.1_2_3:49395567-49395990:-|nuORF;nc|ENSG00000233276|P07203-2|GPX1;ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13397321-13397372:-|nuORF	ENST00000419783.1_2_3:49395567-49395990:-|nuORF	ENST00000419783.1_2_3:49395567-49395990:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	486.2911682128906	2	486.292225	970.569897	0.44909	0.00021839	-0.7299	-0.00035494	-0.28081	-0.00013655	486.29178638170987	132.77	2.1161	132.55	132.23	134.34	-0.22696					105	42	3	0	0	0	0.0073055	15	13103	13103;13108;13114;13120;13126;13133;13139;13145;13151;13163;13169;13175;13182;13195;13201		205.58	76.721	1	834840			31857	11656	26208	26233	35148;35149;35150;35151;35152;35153;35154;35155;35156;35157;35158;35159;35160;35161;35162	35148					0.08343511245811897
LLIENVASL	9	Unmodified	_LLIENVASL_					0	0	0		ENST00000419783.1_2_3:49395567-49395990:-|nuORF;nc|ENSG00000233276|P07203-2|GPX1;ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13397321-13397372:-|nuORF	ENST00000419783.1_2_3:49395567-49395990:-|nuORF	ENST00000419783.1_2_3:49395567-49395990:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	486.291748046875	2	486.292225	970.569897	-0.92203	-0.00044837	0.73103	0.00035549	-0.191	-9.2881E-05	486.2924798333129	133.52	2.4622	132.39	132.07	134.54	-1.1249					111	49	3	0	0	0	0.0073055	13	10719	10708;10713;10719;10725;10731;10737;10743;10750;10756;10764;10769;10776;10782		221.33	78.22	1	887170			31858	11656	26208	26233	35163;35164;35165;35166;35167;35168;35169;35170;35171;35172;35173;35174;35175	35165					0.08343511245811897
LLIENVASL	9	Unmodified	_LLIENVASL_					0	0	0		ENST00000419783.1_2_3:49395567-49395990:-|nuORF;nc|ENSG00000233276|P07203-2|GPX1;ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13397321-13397372:-|nuORF	ENST00000419783.1_2_3:49395567-49395990:-|nuORF	ENST00000419783.1_2_3:49395567-49395990:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.29193115234375	2	486.292225	970.569897	3.3464	0.0016273	-3.7995	-0.0018477	-0.45304	-0.00022031	486.29031472683596	133.8	3.4888	132.27	131.95	135.44	-1.5257					167	70	3	0	0	0	0.0086488	11	12911	12901;12911;12923;12935;12947;12960;12972;12984;12997;13035;13047		176.09	61.501	1	1397500			31859	11656	26208	26233	35176;35177;35178;35179;35180;35181;35182;35183;35184;35185;35186	35177					0.08343511245811897
LLIENVASL	9	Unmodified	_LLIENVASL_					0	0	0		ENST00000419783.1_2_3:49395567-49395990:-|nuORF;nc|ENSG00000233276|P07203-2|GPX1;ENSG00000233276|ENST00000419783|GPX1;ENST00000388829.3_1_X:13397321-13397372:-|nuORF	ENST00000419783.1_2_3:49395567-49395990:-|nuORF	ENST00000419783.1_2_3:49395567-49395990:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	486.292225	970.569897	0.031681	1.5406E-05	-0.23997	-0.00011669	-0.20829	-0.00010129	486.292051255577	134.74	1.2745	134.52	134.29	135.57	-0.22696	0.086006	-0.00041531	NaN	258.1	35	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26934			31860	11656	26208	26233							0.08343511245811897
LLIFLDIHL	9	Unmodified	_LLIFLDIHL_					0	0	0		ENSG00000203663|ENST00000641771|OR2L2	ENSG00000203663|ENST00000641771|OR2L2	ENSG00000203663|ENST00000641771|OR2L2	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7633666992188	2	548.841885	1095.66922	0.70347	0.0003861	-2.9271	-0.0016065	-2.2236	-0.0012204	548.8399990247983	153.15	0.39824	153.15	152.9	153.3	0					13	7	2	0	0	0	0.027462	1	17914	17914		26.796	2.2769	1	26412			31861	8923	26209	26234	35187	35187					0.12520953930561518
LLIFPILLY	9	Unmodified	_LLIFPILLY_					0	0	0			REV__ENSG00000109084|ENST00000226230|TMEM97	REV__ENSG00000109084|ENST00000226230|TMEM97	MULTI-MSMS	OvCa9_classI_Rep2	2	552.854736328125	2	552.857004	1103.69945	-0.081198	-4.4891E-05	-3.8282	-0.0021164	-3.9094	-0.0021613	552.8547372876944	103.29	1.2841	102.6	102.33	103.61	-0.68459					72	25	4	0	0	0	0.32242	1	9541	9541		60.404	0.47286	1	243990	+		31862	17916	26210	26235	35188	35188					0.1517531259576117
LLIFPILLY	9	Unmodified	_LLIFPILLY_					0	0	0			REV__ENSG00000109084|ENST00000226230|TMEM97	REV__ENSG00000109084|ENST00000226230|TMEM97	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.8545532226562	2	552.857004	1103.69945	-0.10248	-5.6659E-05	-4.2002	-0.0023221	-4.3027	-0.0023788	552.8546097952044	105.4	1.5601	103.38	103.05	104.61	-2.0161					76	30	4	0	0	0	0.42921	1	9576	9576		49.211	2.754	1	231230	+		31863	17916	26210	26235	35189	35189					0.1517531259576117
LLIGLPPLLK	10	Unmodified	_LLIGLPPLLK_					0	0	0			REV__tr|A0A553SI33|A0A553SI33_NIACICytochromedubiquinoloxidasesubunitIIOS=NialliacirculansOX=1397GN=cydBPE=3SV=1	REV__tr|A0A553SI33|A0A553SI33_NIACICytochromedubiquinoloxidasesubunitIIOS=NialliacirculansOX=1397GN=cydBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.862548828125	2	538.875728	1075.7369	0.65123	0.00035093	4.2491	0.0022898	4.9004	0.0026407	538.8783880193241	133.01	0.19748	131.89	131.73	131.93	-1.1249					5	3	2	0	0	0	0.027177	1	10658	10658		18.324	0.95945	1	36513	+		31864	29860	26211	26236	35190	35190					0.20206403861357103
LLIGPKTY	8	Unmodified	_LLIGPKTY_					0	0	0			REV__ENST00000491334.1_1_9:123334204-123334291:-|nuORF	REV__ENST00000491334.1_1_9:123334204-123334291:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	452.77777099609375	2	452.778754	903.542954	0.7017	0.00031771	-3.5047	-0.0015868	-2.803	-0.0012691	452.7770221997025	69.454	1.5004	66.639	66.362	67.862	-2.8143					60	29	4	0	0	0	0.60486	1	3099	3099		62.978	5.5258	1	218760	+		31865	26672	26212	26237	35191	35191					0.08732447425279588
LLIGPKTY	8	Unmodified	_LLIGPKTY_					0	0	0			REV__ENST00000491334.1_1_9:123334204-123334291:-|nuORF	REV__ENST00000491334.1_1_9:123334204-123334291:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	452.778754	903.542954	1.47	0.00066559	-4.3783	-0.0019824	-2.9083	-0.0013168	452.77661536745586	69.377	1.3008	66.757	66.515	67.816	-2.6203	0.05888	-0.00052677	NaN	62.978	49	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167320	+		31866	26672	26212	26237							0.08732447425279588
LLIGPRQLGL	10	Unmodified	_LLIGPRQLGL_					0	0	0		ENST00000439083.5_3_2:218766616-218766691:-|nuORF	ENST00000439083.5_3_2:218766616-218766691:-|nuORF	ENST00000439083.5_3_2:218766616-218766691:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.3311157226562	2	540.350409	1078.68626	-0.085155	-4.6014E-05	0.017362	9.3814E-06	-0.067794	-3.6632E-05	540.3505063118874	111.01	1.2104	109.41	109.07	110.28	-1.6011					35	22	2	0	0	0	0.026697	1	10300	10300		45.952	15.448	1	56302			31867	11907	26213	26238	35192	35192					0.15006874536356918
LLIGPRQLGL	10	Unmodified	_LLIGPRQLGL_					0	0	0		ENST00000439083.5_3_2:218766616-218766691:-|nuORF	ENST00000439083.5_3_2:218766616-218766691:-|nuORF	ENST00000439083.5_3_2:218766616-218766691:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	540.350409	1078.68626	-0.54365	-0.00029376	0.2875	0.00015535	-0.25615	-0.00013841	540.350485187874	109.4	0.74284	109.23	109.02	109.76	-0.17236	-0.10209	0.00061945	NaN	45.952	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37937			31868	11907	26213	26238							0.15006874536356918
LLIGSKQFGL	10	Unmodified	_LLIGSKQFGL_					0	0	0		ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	ENSG00000196569|ENST00000421865|LAMA2	MULTI-MSMS	OvCa9_classI_Rep3	3	538.3262939453125	2	538.329142	1074.64373	-5.6218	-0.0030264	1.9414	0.0010451	-3.6804	-0.0019813	538.3300395836094	158.87	1.4268	157.61	157.3	158.73	-1.267					79	27	5	0	0	0	0.74374	1	13750	13750		25.574	1.3713	1	528870			31869	8627	26214	26239	35193	35193					0.10939479408125408
LLIGTGSLLF	10	Unmodified	_LLIGTGSLLF_					0	0	0		tr|A0A7D6VRJ1|A0A7D6VRJ1_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_07135PE=4SV=1	tr|A0A7D6VRJ1|A0A7D6VRJ1_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_07135PE=4SV=1	tr|A0A7D6VRJ1|A0A7D6VRJ1_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_07135PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	517.31884765625	2	517.318243	1032.62193	0.83877	0.00043391	2.1662	0.0011206	3.005	0.0015545	517.3191831149613	112.7	1.9244	112.58	112.28	114.2	-0.12174					94	38	4	0	0	0	0.28791	1	10684	10684		82.305	5.5309	1	430350			31870	34937	26215	26240	35194	35194					0.10692674659571821
LLIGTMGALAP	11	Unmodified	_LLIGTMGALAP_					0	0	0			REV__ENSG00000135144|ENST00000548759|DTX1	REV__ENSG00000135144|ENST00000548759|DTX1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.795166015625	2	528.809728	1055.6049	-1.2511	-0.00066159	-1.6127	-0.00085283	-2.8638	-0.0015144	529.3113610745899	104.33	0.57718	102.21	102.01	102.59	-2.1192					17	10	3	0	0	0	0.025366	1	9468	9468		44.117	0	1	30389	+		31871	19263	26216	26241	35195	35195					0.07932430782102529
LLIHIILIL	9	Unmodified	_LLIHIILIL_					0	0	0			REV__L1PREC2_dup1338|chr3:98831351-98834041:-|1.380298648680358|0.2119742938869221|2.7|429.0|107|2|anti-sense	REV__L1PREC2_dup1338|chr3:98831351-98834041:-|1.380298648680358|0.2119742938869221|2.7|429.0|107|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.30712890625	2	530.878271	1059.74199	-0.47881	-0.00025419	1.1409	0.0006057	0.66212	0.0003515	530.8777375193706	53.815	0.24041	53.815	53.651	53.891	0					9	5	2	0	0	0	0.027462	1	4306	4306		14.664	0	1	184100	+		31872	28606	26217	26242	35196	35196					0.21450707724011409
LLIHIYRPVN	10	Unmodified	_LLIHIYRPVN_					0	0	0			REV__ENSG00000176787|ENST00000321522|OR52E2	REV__ENSG00000176787|ENST00000321522|OR52E2	MULTI-MSMS	OvCa9_classI_Rep3	3	619.371337890625	2	619.374415	1236.73428	-5.649	-0.0034989	1.4512	0.00089884	-4.1978	-0.0026	619.3752552398936	159.28	1.2139	158.02	157.66	158.88	-1.267					65	23	4	0	0	0	0.81289	1	13786	13786		17.365	0.89182	1	112740	+		31873	21969	26218	26243	35197	35197					0.1253794845642915
LLIHLVTSF	9	Unmodified	_LLIHLVTSF_					0	0	0			REV__ENST00000398316.7_1_13:49705333-49705405:+|nuORF	REV__ENST00000398316.7_1_13:49705333-49705405:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.3364868164062	2	521.81841	1041.62227	-0.25137	-0.00013117	-0.4549	-0.00023737	-0.70626	-0.00036854	521.8179602495195	115.97	1.817	114.61	113.95	115.77	-1.3645					90	35	4	0	0	0	0.027462	1	10775	10775		26.796	1.3459	1	369120	+		31874	25375	26219	26244	35198	35198					0.10312094379423797
LLIIILMI	8	Unmodified	_LLIIILMI_					0	0	0			REV__tr|A0A7D6W3Y7|A0A7D6W3Y7_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11740PE=4SV=1	REV__tr|A0A7D6W3Y7|A0A7D6W3Y7_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11740PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.3105163574219	2	471.327025	940.639497	1.3049	0.00061502	-1.2772	-0.00060199	0.027638	1.3027E-05	471.3265505648135	31.949	0.19367	29.254	29.096	29.289	-2.6954					8	6	2	0	0	0	0.028476	1	731	731		10.185	0	1	6726.8	+		31875	31927	26220	26245	35199	35199					0.16680298660855897
LLIIMLFGI	9	Unmodified	_LLIIMLFGI_					0	0	0			REV__tr|A0A553SKP7|A0A553SKP7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_19095PE=4SV=1	REV__tr|A0A553SKP7|A0A553SKP7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_19095PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.3054809570312	2	516.829932	1031.64531	-0.79167	-0.00040916	4.2651	0.0022044	3.4735	0.0017952	516.8320151324381	102.71	1.1341	102.02	101.64	102.77	-0.68459					38	22	2	0	0	0	0.027462	1	9433	9433		21.702	0	1	25698	+		31876	30143	26221	26246	35200	35200					0.1307539717254258
LLIINPPA	8	Unmodified	_LLIINPPA_					0	0	0		tr|A0A553SL33|A0A553SL33_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_19875PE=4SV=1	tr|A0A553SL33|A0A553SL33_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_19875PE=4SV=1	tr|A0A553SL33|A0A553SL33_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_19875PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	425.77581787109375	2	425.773471	849.53239	0.18246	7.7687E-05	2.9192	0.0012429	3.1016	0.0013206	425.7745663985642	65.166	0.70923	65.166	64.916	65.625	0					42	17	4	0	0	0	0.73626	1	5965	5965		33.516	5.2613	1	2902100			31877	33680	26222	26247	35201	35201					0.10160464770854105
LLIINPPA	8	Unmodified	_LLIINPPA_					0	0	0		tr|A0A553SL33|A0A553SL33_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_19875PE=4SV=1	tr|A0A553SL33|A0A553SL33_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_19875PE=4SV=1	tr|A0A553SL33|A0A553SL33_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_19875PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	425.7743835449219	2	425.773471	849.53239	0.35721	0.00015209	2.8578	0.0012168	3.215	0.0013689	425.77457093952984	70.919	1.9242	68.349	67.916	69.84	-2.5707					106	36	5	0	0	0	0.74971	4	5703	5691;5703;5709;5715		26.796	5.8177	1	1515700			31878	33680	26222	26247	35202;35203;35204;35205	35203					0.10160464770854105
LLIINPPA	8	Unmodified	_LLIINPPA_					0	0	0		tr|A0A553SL33|A0A553SL33_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_19875PE=4SV=1	tr|A0A553SL33|A0A553SL33_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_19875PE=4SV=1	tr|A0A553SL33|A0A553SL33_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_19875PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	425.77545166015625	2	425.773471	849.53239	-0.54738	-0.00023306	3.7264	0.0015866	3.179	0.0013535	425.7749745888364	69.607	2.0379	66.126	65.811	67.849	-3.4812					126	41	5	0	0	0	0.72922	1	5265	5265		37.028	7.1869	1	3927600			31879	33680	26222	26247	35206	35206					0.10160464770854105
LLIINPPA	8	Unmodified	_LLIINPPA_					0	0	0		tr|A0A553SL33|A0A553SL33_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_19875PE=4SV=1	tr|A0A553SL33|A0A553SL33_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_19875PE=4SV=1	tr|A0A553SL33|A0A553SL33_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_19875PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	425.7756652832031	2	425.773471	849.53239	-0.86174	-0.00036691	3.963	0.0016873	3.1013	0.0013204	425.7750552355212	71.84	1.752	68.383	67.924	69.676	-3.4563					99	35	4	0	0	0	0.75661	1	5523	5523		19.36	4.6959	1	1857400			31880	33680	26222	26247	35207	35207					0.10160464770854105
LLIISPLAR	9	Unmodified	_LLIISPLAR_					0	0	0			REV__ENSG00000134830|ENST00000595464|C5AR2	REV__ENSG00000134830|ENST00000595464|C5AR2	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3341064453125	2	498.334227	994.653902	1.9139	0.00095378	-2.3002	-0.0011463	-0.38626	-0.00019248	498.33299664402506	137.15	1.8718	135.61	134.84	136.71	-1.5437					88	39	4	0	0	0	0.46377	1	13354	13354		45.952	0	1	198330	+		31881	19237	26223	26248	35208	35208					0.15636087133361798
LLIKEDHNL	9	Unmodified	_LLIKEDHNL_					0	0	0		ENSG00000167355|ENST00000300773|OR51B5	ENSG00000167355|ENST00000300773|OR51B5	ENSG00000167355|ENST00000300773|OR51B5	MULTI-MSMS	OvCa99_classI_Rep5	1	547.8163452148438	2	547.813856	1093.61316	2.0352	0.0011149	0.24283	0.00013302	2.2781	0.001248	547.8138420756068	82.414	0.93069	82.414	82.061	82.992	0					54	21	4	0	0	0	0.44568	1	8514	8514		47.657	0	1	6145600			31882	6783	26224	26249	35209	35209					0.07009701023071102
LLIKEPPKR	9	Unmodified	_LLIKEPPKR_					0	0	0		nc|ENSG00000103313|O15553-1|MEFV;ENSG00000103313|ENST00000219596|MEFV	nc|ENSG00000103313|O15553-1|MEFV	nc|ENSG00000103313|O15553-1|MEFV	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.79150390625	2	547.358234	1092.70191	1.6422	0.00089889	0.13327	7.2948E-05	1.7755	0.00097184	547.3580870730174	127.99	0.32565	127.99	127.81	128.14	0					9	6	2	0	0	0	0.027462	1	14825	14825		40.573	15.122	1	40164			31883	2306	26225	26250	35210	35210					0.15927161053423333
LLIKHLCPSL	10	Unmodified	_LLIKHLCPSL_					0	0	0			REV__ENSG00000163867|ENST00000357182|ZMYM6	REV__ENSG00000163867|ENST00000357182|ZMYM6	MULTI-MSMS	OvCa9_classI_Rep4_	4	568.8461303710938	2	568.846645	1135.67874	0.54685	0.00031108	-0.86263	-0.0004907	-0.31578	-0.00017963	568.8459810585302	123.26	2.2433	121.89	120.96	123.2	-1.3666					118	44	3	0	0	0	0.65434	1	11733	11733		35.618	0	1	383340	+		31884	20901	26226	26251	35211	35211					0.11632398944425404
LLIKKYENV	9	Unmodified	_LLIKKYENV_					0	0	0			REV__ENST00000491210.1_1_1:158811943-158812264:+|nuORF	REV__ENST00000491210.1_1_1:158811943-158812264:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.3397216796875	2	560.342249	1118.66995	-5.405	-0.0030286	1.8017	0.0010096	-3.6033	-0.0020191	560.3432112723539	161.88	2.7705	160.26	159.52	162.29	-1.6239					146	74	5	0	0	0	0.68424	1	16025	16025		21.96	1.013	1	403070	+		31885	20853	26227	26252	35212	35212					0.11535748579603933
LLIKLGKGAP	10	Unmodified	_LLIKLGKGAP_					0	0	0			REV__ENST00000320954.10_2_3:33187460-33187940:+|nuORF	REV__ENST00000320954.10_2_3:33187460-33187940:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	505.3413391113281	2	505.342052	1008.66955	-1.2256	-0.00061935	0.24452	0.00012356	-0.9811	-0.00049579	505.3419478940064	134.8	1.6252	133.68	133.41	135.03	-1.1226					106	32	5	0	0	0	0.49049	1	10898	10898		55.504	0.72789	1	959590	+		31886	24444	26228	26253	35213	35213					0.16556373650416845
LLIKNKILE	9	Unmodified	_LLIKNKILE_					0	0	0			REV__tr|A0A7D6VRI1|A0A7D6VRI1_9CLOTHistidineproteinkinaseSaeSOS=ClostridiumintestinaleOX=36845GN=HZF06_00955PE=4SV=1	REV__tr|A0A7D6VRI1|A0A7D6VRI1_9CLOTHistidineproteinkinaseSaeSOS=ClostridiumintestinaleOX=36845GN=HZF06_00955PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	542.36083984375	2	542.360442	1082.70633	1.6867	0.00091478	0.45732	0.00024803	2.144	0.0011628	542.3605704831067	135.57	2.7587	135.57	135.17	137.93	0					119	58	4	0	0	0	0.036687	1	15771	15771		129.68	2.2209	1	2035700	+		31887	31419	26229	26254	35214	35214					0.16828625476318848
LLIKPRELQ	9	Unmodified	_LLIKPRELQ_					0	0	0		ENST00000439362.5_1_2:111966073-111966139:-|nuORF	ENST00000439362.5_1_2:111966073-111966139:-|nuORF	ENST00000439362.5_1_2:111966073-111966139:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	555.3531494140625	2	555.355691	1108.69683	-7.0233	-0.0039004	3.381	0.0018777	-3.6422	-0.0020227	555.3574443782504	158.85	1.8694	157.58	157.26	159.13	-1.267					85	36	5	0	0	0	0.55588	1	13751	13751		37.159	6.6555	1	417810			31888	11914	26230	26255	35215	35215					0.14682857190791765
LLIKTAAAAAM	11	Unmodified	_LLIKTAAAAAM_					0	0	0			REV__ENSG00000131015|ENST00000367351|ULBP2	REV__ENSG00000131015|ENST00000367351|ULBP2	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.8082885742188	2	537.323002	1072.63145	0.50258	0.00027005	-1.9441	-0.0010446	-1.4415	-0.00077454	537.322424479067	65.764	0.24923	63.069	62.872	63.121	-2.6958					6	4	2	0	0	0	0.02557	1	5068	5068		12.812	1.3007	1	8376.8	+		31889	18989	26231	26256	35216	35216					0.09804119673435707
LLILFPNI	8	Unmodified	_LLILFPNI_					0	0	0		tr|A0A7D6ZV68|A0A7D6ZV68_9CLOTBglGfamilytranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02720PE=4SV=1	tr|A0A7D6ZV68|A0A7D6ZV68_9CLOTBglGfamilytranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02720PE=4SV=1	tr|A0A7D6ZV68|A0A7D6ZV68_9CLOTBglGfamilytranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02720PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.7908630371094	2	471.804771	941.59499	2.9906	0.001411	-4.2103	-0.0019864	-1.2197	-0.00057544	471.8024227454213	89.494	0.57304	89.494	89.275	89.848	0					26	13	3	0	0	0	0.028476	1	9539	9539		44.531	0	1	779900			31890	35793	26232	26257	35217	35217					0.1218561083902614
LLILFTSTF	9	Unmodified	_LLILFTSTF_					0	0	0			REV__tr|A0A7D6ZWQ9|A0A7D6ZWQ9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08955PE=4SV=1	REV__tr|A0A7D6ZWQ9|A0A7D6ZWQ9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08955PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	527.3560791015625	2	527.812793	1053.61103	-1.4901	-0.00078648	2.209	0.0011659	0.71892	0.00037946	528.3149323403377	85.225	0.48658	83.004	82.648	83.134	-2.2204					14	9	2	0	0	0	0.027462	1	4968	4968		44.531	7.372	1	21972	+		31891	31651	26233	26258	35218	35218					0.08637272285250219
LLILGPPWF	9	Unmodified	_LLILGPPWF_					0	0	0			REV__nc|ENSG00000069849|P54709-2|ATP1B3	REV__nc|ENSG00000069849|P54709-2|ATP1B3	MULTI-MSMS	OvCa9_classI_Rep2	2	528.3192749023438	2	528.318046	1054.62154	-1.2877	-0.00068031	4.0806	0.0021558	2.7929	0.0014755	528.3201028484496	56.253	2.2315	53.449	52.879	55.11	-2.804					126	44	4	0	0	0	0.53728	1	3934	3934		39.021	1.8624	1	541320	+		31892	26165	26234	26259	35219	35219					0.09641299730355968
LLILLVSCSF	10	Unmodified	_LLILLVSCSF_					0	0	0		L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|281|2|anti-sense	L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|281|2|anti-sense	L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|281|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.2515869140625	2	554.327753	1106.64095	1.7532	0.00097186	0.50588	0.00028042	2.2591	0.0012523	554.3279849152871	106.89	0.81314	106.89	106.63	107.44	0					35	18	3	0	0	0	0.026822	1	12055	12055		23.042	10.836	1	722160			31893	14707	26235	26260	35220	35220					0.09189887958973486
LLILMPAKH	9	Unmodified	_LLILMPAKH_					0	0	0		ENST00000425141.5_1_2:220498093-220506447:+|nuORF;nc|ENSG00000114923|P48751-2|SLC4A3;ENSG00000114923|ENST00000358055|SLC4A3;nc|ENSG00000114923|P48751-3|SLC4A3	ENST00000425141.5_1_2:220498093-220506447:+|nuORF	ENST00000425141.5_1_2:220498093-220506447:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.325927734375	2	518.322805	1034.63106	-1.0284	-0.00053303	4.4097	0.0022856	3.3813	0.0017526	518.3250657043614	70.688	2.5247	67.207	66.836	69.361	-3.4812					145	51	4	0	0	0	0.57242	1	5397	5397		35.201	0	1	2922500			31894	3049	26236	26261	35221	35221					0.11512744744231895
LLILSPARP	9	Unmodified	_LLILSPARP_					0	0	0			REV__ENST00000368680.3_1_1:153651158-153651548:+|nuORF	REV__ENST00000368680.3_1_1:153651158-153651548:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	490.33673095703125	2	490.318577	978.622602	-1.5315	-0.00075093	3.1824	0.0015604	1.6509	0.00080948	490.3201186048418	136.95	0.97557	135.87	135.31	136.29	-1.0858					27	19	2	0	0	0	0.027462	1	11126	11126		50.025	8.8162	1	33014	+		31895	24925	26237	26262	35222	35222					0.1324351409926976
LLILTTTGLFF	11	Unmodified	_LLILTTTGLFF_					0	0	0		ENSG00000204160|ENST00000374142|ZDHHC18	ENSG00000204160|ENST00000374142|ZDHHC18	ENSG00000204160|ENST00000374142|ZDHHC18	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8696899414062	2	619.873382	1237.73221	-3.6059	-0.0022352	-2.8194	-0.0017477	-6.4253	-0.0039829	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.69754	1	13075	13075		30.504	6.3009	1	664560			31896	8953	26238	26263	35223	35223					0.12285474927921314
LLILWFSYGY	10	Unmodified	_LLILWFSYGY_					0	0	0			REV__nc|ENSG00000180745|Q8NCR9-2|CLRN3	REV__nc|ENSG00000180745|Q8NCR9-2|CLRN3	MULTI-SECPEP	OvCa99_classI_Rep5	1	637.2890014648438	2	637.844625	1273.6747	1.325	0.00084512	1.3246	0.00084491	2.6496	0.00169	637.8452350853647	154.47	0.50627	154.47	154.32	154.83	0					18	9	3	0	0	0	0.026822	1	18083	18083		38.806	9.6566	1	62840	+		31897	22190	26239	26264	35224	35224					0.04880632722370137
LLIMPLISV	9	Oxidation (M)	_LLIM(Oxidation (M))PLISV_		LLIM(1)PLISV		LLIM(42)PLISV	0	0	1		ENST00000540785.1_1_13:111353724-111357953:-|nuORF	ENST00000540785.1_1_13:111353724-111357953:-|nuORF	ENST00000540785.1_1_13:111353724-111357953:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	507.8127136230469	2	507.817021	1013.61949	-5.2506	-0.0026663	-2.1361	-0.0010848	-7.3867	-0.0037511	507.8157920918579	151.79	1.2085	150.83	150.5	151.71	-0.95647					49	23	3	0	0	0	0.50066	1	12939	12939		42.474	7.2737	1	103240			31898	13457	26240	26265	35225	35225		349			0.1132250293026118
LLINACLNKL	10	Unmodified	_LLINACLNKL_					0	0	0		nc|ENSG00000101940|Q9H1Z4-2|WDR13;ENSG00000101940|ENST00000376729|WDR13	nc|ENSG00000101940|Q9H1Z4-2|WDR13	nc|ENSG00000101940|Q9H1Z4-2|WDR13	MULTI-SECPEP	OvCa9_classI_Rep3	3	558.2415771484375	2	557.836277	1113.658	-0.0098309	-5.484E-06	-3.2812	-0.0018303	-3.291	-0.0018358	557.8346691861175	130.37	0.59288	129.25	128.98	129.57	-1.1121					13	11	2	0	0	0	0.026956	1	10313	10313		42.396	3.59	1	19654			31899	2207	26241	26266	35226	35226					0.10571808564759522
LLINFVMDK	9	Unmodified	_LLINFVMDK_					0	0	0			REV__tr|A0A553SQ91|A0A553SQ91_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_21160PE=3SV=1	REV__tr|A0A553SQ91|A0A553SQ91_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_21160PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.8081665039062	2	546.809728	1091.6049	-1.1771	-0.00064363	-2.1879	-0.0011964	-3.365	-0.00184	546.8084190590075	117.84	2.0896	116.49	116.16	118.25	-1.3444					94	39	3	0	0	0	0.55588	1	11069	11069		37.159	0.13063	1	470000	+		31900	30614	26242	26267	35227	35227					0.06276430782099851
LLINRITE	8	Unmodified	_LLINRITE_					0	0	0			REV__ENSG00000111335|ENST00000392583|OAS2	REV__ENSG00000111335|ENST00000392583|OAS2	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.282470703125	2	486.297842	970.581131	-1.6595	-0.000807	1.486	0.00072265	-0.17344	-8.4345E-05	486.29840739434684	93.463	1.1119	91.501	91.128	92.24	-1.9617					34	21	2	0	0	0	0.028476	1	6055	6055		25.45	8.0852	1	81260	+		31901	18028	26243	26268	35228	35228					0.09466333339946686
LLIPFNEGV	9	Unmodified	_LLIPFNEGV_					0	0	0			REV__tr|A0A7D6ZXG8|A0A7D6ZXG8_9CLOTNADH:flavinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22925PE=3SV=1	REV__tr|A0A7D6ZXG8|A0A7D6ZXG8_9CLOTNADH:flavinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22925PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.73388671875	2	501.286943	1000.55933	-2.9223	-0.0014649	3.6849	0.0018472	0.76257	0.00038227	501.28983321589334	87.966	0.85576	85.363	84.925	85.781	-2.6027					24	12	3	0	0	0	0.027426	1	7474	7474		53.351	0.41475	1	91589	+		31902	32331	26244	26269	35229	35229					0.05907528591387745
LLIPFNEGV	9	Unmodified	_LLIPFNEGV_					0	0	0			REV__tr|A0A7D6ZXG8|A0A7D6ZXG8_9CLOTNADH:flavinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22925PE=3SV=1	REV__tr|A0A7D6ZXG8|A0A7D6ZXG8_9CLOTNADH:flavinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22925PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	501.286943	1000.55933	-0.10917	-5.4723E-05	4.2805	0.0021458	4.1713	0.002091	501.2891528712216	86.78	0.67613	85.349	85.015	85.692	-1.4311	-0.0072269	0.00023241	NaN	44.117	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72412	+		31903	32331	26244	26269							0.05907528591387745
LLIPGRAII	9	Unmodified	_LLIPGRAII_					0	0	0		tr|A0A7D6ZZD2|A0A7D6ZZD2_9CLOTDUF3794domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19630PE=4SV=1	tr|A0A7D6ZZD2|A0A7D6ZZD2_9CLOTDUF3794domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19630PE=4SV=1	tr|A0A7D6ZZD2|A0A7D6ZZD2_9CLOTDUF3794domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19630PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	483.32928466796875	2	483.328945	964.643337	2.4246	0.0011719	-2.8561	-0.0013804	-0.4315	-0.00020856	483.327447833265	136.12	0.97223	134.57	134.3	135.27	-1.5437					29	19	2	0	0	0	0.52083	1	13203	13203		40.573	15.122	1	31891			31904	35956	26245	26270	35230	35230					0.1596010447893832
LLIPGRAII	9	Unmodified	_LLIPGRAII_					0	0	0		tr|A0A7D6ZZD2|A0A7D6ZZD2_9CLOTDUF3794domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19630PE=4SV=1	tr|A0A7D6ZZD2|A0A7D6ZZD2_9CLOTDUF3794domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19630PE=4SV=1	tr|A0A7D6ZZD2|A0A7D6ZZD2_9CLOTDUF3794domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19630PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	483.328945	964.643337	-0.12018	-5.8086E-05	-0.0033399	-1.6143E-06	-0.12352	-5.97E-05	483.32887967324257	134.5	0.73466	134.27	133.9	134.64	-0.22696	-0.22866	0.00038194	NaN	40.573	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20314			31905	35956	26245	26270							0.1596010447893832
LLIPGRAII	9	Unmodified	_LLIPGRAII_					0	0	0		tr|A0A7D6ZZD2|A0A7D6ZZD2_9CLOTDUF3794domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19630PE=4SV=1	tr|A0A7D6ZZD2|A0A7D6ZZD2_9CLOTDUF3794domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19630PE=4SV=1	tr|A0A7D6ZZD2|A0A7D6ZZD2_9CLOTDUF3794domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19630PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	483.328945	964.643337	-1.0767	-0.00052038	0.85684	0.00041414	-0.21982	-0.00010624	483.32926963167637	135.76	0.88568	134.65	134.36	135.24	-1.1076	0.15582	0.0012134	NaN	40.573	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20726			31906	35956	26245	26270							0.1596010447893832
LLIPSQVRAL	10	Unmodified	_LLIPSQVRAL_					0	0	0		nc|ENSG00000204410|O43196-4|MSH5;nc|ENSG00000204410|O43196-3|MSH5	nc|ENSG00000204410|O43196-4|MSH5	nc|ENSG00000204410|O43196-4|MSH5	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.3532104492188	2	555.355691	1108.69683	-5.7234	-0.0031785	1.8077	0.0010039	-3.9157	-0.0021746	555.3566390635189	159.36	1.8651	157.77	157.41	159.27	-1.5858					127	42	5	0	0	0	0.7759	1	15765	15765		21.96	0	1	1093300			31907	15269	26246	26271	35231	35231					0.14682857190791765
LLIQLDSH	8	Unmodified	_LLIQLDSH_					0	0	0		ENSG00000197233|ENST00000335302|OR1J2;ENSG00000136834|ENST00000259357|OR1J1	ENSG00000197233|ENST00000335302|OR1J2	ENSG00000197233|ENST00000335302|OR1J2	MULTI-SECPEP	OvCa9_classI_Rep2	2	469.8047790527344	2	469.768917	937.523281	1.6481	0.00077425	-1.7275	-0.00081153	-0.079364	-3.7283E-05	469.7680518453886	88.87	0.98648	87.502	87.183	88.17	-1.3676					25	19	2	0	0	0	0.028476	1	7824	7824		83.287	19.981	1	35670			31908	8692	26247	26272	35232	35232					0.052020714145328384
LLIQLDSH	8	Unmodified	_LLIQLDSH_					0	0	0		ENSG00000197233|ENST00000335302|OR1J2;ENSG00000136834|ENST00000259357|OR1J1	ENSG00000197233|ENST00000335302|OR1J2	ENSG00000197233|ENST00000335302|OR1J2	MULTI-SECPEP	OvCa9_classI_Rep3	3	469.8062744140625	2	469.768917	937.523281	-0.14808	-6.9562E-05	0.31824	0.0001495	0.17016	7.9936E-05	469.76892265379416	89.494	0.86074	87.413	87.143	88.004	-2.0805					28	16	3	0	0	0	0.028476	1	5555	5555		94.006	0	1	60166			31909	8692	26247	26272	35233	35233					0.052020714145328384
LLIQNLISSY	10	Unmodified	_LLIQNLISSY_					0	0	0		ENST00000377110.7_2_9:73461461-73477999:-|nuORF	ENST00000377110.7_2_9:73461461-73477999:-|nuORF	ENST00000377110.7_2_9:73461461-73477999:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	582.31884765625	2	582.337164	1162.65977	-1.6989	-0.00098931	1.8341	0.0010681	0.13526	7.8766E-05	582.3380114067203	95.782	0.9593	93.356	93.005	93.964	-2.4256					34	18	3	0	0	0	0.026714	1	8430	8430		51.193	1.1682	1	39727			31910	11086	26248	26273	35234	35234					0.08495140854392957
LLIQNLISSY	10	Unmodified	_LLIQNLISSY_					0	0	0		ENST00000377110.7_2_9:73461461-73477999:-|nuORF	ENST00000377110.7_2_9:73461461-73477999:-|nuORF	ENST00000377110.7_2_9:73461461-73477999:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	582.337164	1162.65977	-1.7297	-0.0010073	1.7812	0.0010373	0.051464	2.997E-05	582.3380844020014	95.146	0.84865	93.251	93.014	93.863	-1.8956	-0.05274	-3.072E-05	NaN	51.193	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41644			31911	11086	26248	26273							0.08495140854392957
LLIQSKVSF	9	Unmodified	_LLIQSKVSF_					0	0	0			REV__ENST00000256255.10_2_8:29920661-29920694:-|nuORF	REV__ENST00000256255.10_2_8:29920661-29920694:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.8126831054688	2	517.815867	1033.61718	1.8771	0.000972	-2.5892	-0.0013407	-0.71203	-0.0003687	517.8145040051442	87.935	1.4722	86.504	86.139	87.611	-1.4311					56	29	2	0	0	0	0.027462	1	7672	7672		31.53	4.8369	1	116690	+		31912	23889	26249	26274	35235	35235					0.10171790516801593
LLIRFPLD	8	Unmodified	_LLIRFPLD_					0	0	0			REV__tr|A0A7D6VR56|A0A7D6VR56_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23530PE=4SV=1	REV__tr|A0A7D6VR56|A0A7D6VR56_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23530PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3235778808594	2	493.805303	985.596052	-0.39352	-0.00019432	4.2242	0.0020859	3.8306	0.0018916	493.8063894587644	78.817	0.44148	76.474	76.261	76.702	-2.3433					11	8	2	0	0	0	0.028476	1	4211	4211		42.474	3.6683	1	26230	+		31913	31388	26250	26275	35236	35236					0.10267825207949954
LLIRIMQDLT	10	Unmodified	_LLIRIMQDLT_					0	0	0			REV__ENSG00000174173|ENST00000309922|TRMT10C	REV__ENSG00000174173|ENST00000309922|TRMT10C	MULTI-SECPEP	OvCa9_classI_Rep3	3	404.91143798828125	3	405.90917	1214.70568	2.0675	0.0008392	4.3505	0.0017659	6.418	0.0026051	405.9107903349818	66.067	1.0664	63.121	62.503	63.57	-2.9459					35	20	2	0	0	0	0.027033	1	2708	2708		20.837	5.504	1	19320	+		31914	21814	26251	26276	35237	35237					0.1069146276495303
LLIRPTAL	8	Unmodified	_LLIRPTAL_					0	0	0		ENSG00000213822|ENST00000396477|CEACAM18	ENSG00000213822|ENST00000396477|CEACAM18	ENSG00000213822|ENST00000396477|CEACAM18	MULTI-MSMS	OvCa9_classI_Rep3	3	448.8000183105469	2	448.80002	895.585488	0.73618	0.0003304	-0.70585	-0.00031678	0.030333	1.3614E-05	448.7995819385941	119.43	1.6759	118.4	117.98	119.66	-1.0271					86	33	4	0	0	0	0.50674	1	9064	9064		76.847	2.8719	1	762460			31915	9150	26252	26277	35238	35238					0.1335184255351578
LLIRQPVTVE	10	Unmodified	_LLIRQPVTVE_					0	0	0		ENST00000373055.5_1_1:38158113-38158182:+|nuORF	ENST00000373055.5_1_1:38158113-38158182:+|nuORF	ENST00000373055.5_1_1:38158113-38158182:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3563232421875	2	584.358431	1166.70231	-2.312	-0.0013511	-1.149	-0.00067141	-3.461	-0.0020225	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.83261	1	14740	14740		14.865	0	1	180810			31916	10996	26253	26278	35239	35239					0.12562535982578993
LLISKAEDY	9	Unmodified	_LLISKAEDY_					0	0	0		IGF1R|p.S72C|1|0.2|ENSG00000140443|chr15:98707681-98707681|A/T|missense_variant;IGF1R|p.F1189Lfs*51|1|0.28|ENSG00000140443|chr15:98943031-98943032|-/A|frameshift_variant;ENSG00000140443|ENST00000650285|IGF1R	IGF1R|p.S72C|1|0.2|ENSG00000140443|chr15:98707681-98707681|A/T|missense_variant	IGF1R|p.S72C|1|0.2|ENSG00000140443|chr15:98707681-98707681|A/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.3212890625	2	526.28714	1050.55973	0.21321	0.00011221	0.20135	0.00010597	0.41456	0.00021818	526.286770420323	110.12	1.6841	108.52	107.7	109.38	-1.6011					59	31	3	0	0	0	0.027462	1	10158	10158		37.159	0	1	185840			31917	4839	26254	26279	35240	35240					0.03646903520575506
LLISKAEDY	9	Unmodified	_LLISKAEDY_					0	0	0		IGF1R|p.S72C|1|0.2|ENSG00000140443|chr15:98707681-98707681|A/T|missense_variant;IGF1R|p.F1189Lfs*51|1|0.28|ENSG00000140443|chr15:98943031-98943032|-/A|frameshift_variant;ENSG00000140443|ENST00000650285|IGF1R	IGF1R|p.S72C|1|0.2|ENSG00000140443|chr15:98707681-98707681|A/T|missense_variant	IGF1R|p.S72C|1|0.2|ENSG00000140443|chr15:98707681-98707681|A/T|missense_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	526.28714	1050.55973	-0.74542	-0.0003923	0.46398	0.00024419	-0.28144	-0.00014812	526.2873737581269	109.57	1.2073	108.43	108.14	109.35	-1.1444	-0.034654	0.00032329	NaN	37.159	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151990			31918	4839	26254	26279							0.03646903520575506
LLISLTGTPRP	11	Unmodified	_LLISLTGTPRP_					0	0	0		nc|ENSG00000075651|Q13393-3|PLD1	nc|ENSG00000075651|Q13393-3|PLD1	nc|ENSG00000075651|Q13393-3|PLD1	MULTI-MSMS	OvCa9_classI_Rep3	3	584.3560180664062	2	584.358431	1166.70231	-4.6254	-0.0027029	1.1397	0.00066599	-3.4857	-0.0020369	584.3589865391973	145.25	4.5766	144.28	142.9	147.48	-0.97299					233	91	4	0	0	0	0.69455	1	12176	12176		31.53	2.3598	1	156220			31919	14892	26255	26280	35241	35241					0.1256253598260173
LLISSKWLP	9	Unmodified	_LLISSKWLP_					0	0	0		ENST00000312239.9_1_1:21069635-21069701:-|nuORF	ENST00000312239.9_1_1:21069635-21069701:-|nuORF	ENST00000312239.9_1_1:21069635-21069701:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	528.823486328125	2	528.826235	1055.63792	1.6778	0.00088726	-2.5399	-0.0013431	-0.86207	-0.00045589	528.824227315822	117.16	0.83391	117.16	116.82	117.65	0					32	17	3	0	0	0	0.16524	1	13413	13413		82.305	2.5924	1	560660			31920	10306	26256	26281	35242	35242					0.11232380896467475
LLITFVIDI	9	Unmodified	_LLITFVIDI_					0	0	0		tr|A0A553SUF9|A0A553SUF9_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_06955PE=4SV=1	tr|A0A553SUF9|A0A553SUF9_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_06955PE=4SV=1	tr|A0A553SUF9|A0A553SUF9_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_06955PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	524.7843017578125	2	523.828443	1045.64233	-0.66076	-0.00034612	-2.1711	-0.0011373	-2.8319	-0.0014834	523.8267714215054	98.057	0.82186	96.298	96.06	96.882	-1.7595					20	15	2	0	0	0	0.027462	1	6596	6596		37.159	5.2042	1	30445			31921	34605	26257	26282	35243	35243					0.12133845319385728
LLITGGIIDL	10	Unmodified	_LLITGGIIDL_					0	0	0			REV__tr|A0A553SN53|A0A553SN53_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23825PE=4SV=1	REV__tr|A0A553SN53|A0A553SN53_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23825PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.280517578125	2	514.323525	1026.6325	-0.014555	-7.4859E-06	4.2608	0.0021914	4.2462	0.0021839	514.3261660667446	73.69	0.3083	73.69	73.52	73.829	0					17	7	3	0	0	0	0.026871	1	7229	7229		37.159	0	1	204730	+		31922	30393	26258	26283	35244	35244					0.12024657314009346
LLITILLVKNK	11	Unmodified	_LLITILLVKNK_					0	0	0		tr|A0A553SU87|A0A553SU87_NIACIDUF916andDUF3324domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06465PE=4SV=1	tr|A0A553SU87|A0A553SU87_NIACIDUF916andDUF3324domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06465PE=4SV=1	tr|A0A553SU87|A0A553SU87_NIACIDUF916andDUF3324domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06465PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	423.2147216796875	3	423.295241	1266.86389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.18	1	136.18	135.68	136.68	0								0	0	0	0.19474	1	15873	15873		9.6461	0	1				31923	34583	26259	26284	35245	35245					0.2411370501570218
LLITKGAK	8	Unmodified	_LLITKGAK_					0	0	0		nc|ENSG00000196199|Q99549-2|MPHOSPH8;ENSG00000196199|ENST00000361479|MPHOSPH8;MPHOSPH8|p.G678Kfs*10|1|0.32|ENSG00000196199|chr13:19666431-19666432|AA/-|frameshift_variant	nc|ENSG00000196199|Q99549-2|MPHOSPH8	nc|ENSG00000196199|Q99549-2|MPHOSPH8	MULTI-SECPEP	OvCa99_classI_Rep5	1	422.57080078125	2	422.286746	842.558939	-0.05743	-2.4252E-05	0.26022	0.00010989	0.20279	8.5636E-05	422.28673003959614	63.681	0.71716	63.681	63.414	64.132	0					42	17	3	0	0	0	0.028476	1	5766	5766		68.485	18.46	1	3316500			31924	15239	26260	26285	35246	35246					0.1313615366218528
LLITLLKK	8	Unmodified	_LLITLLKK_					0	0	0			REV__ENST00000471887.1_1_7:18557286-18557502:+|nuORF	REV__ENST00000471887.1_1_7:18557286-18557502:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.2560119628906	2	471.341521	940.668489	0.50579	0.0002384	1.9727	0.0009298	2.4785	0.0011682	471.3423212008545	45.956	0.13423	45.956	45.89	46.024	0					4	2	2	0	0	0	0.028476	1	3208	3208		1.3276	0	1	43961	+		31925	26297	26261	26286	35247	35247					0.19578159281513763
LLITMGKEP	9	Unmodified	_LLITMGKEP_					0	0	0		ENSG00000114670|ENST00000383366|NEK11	ENSG00000114670|ENST00000383366|NEK11	ENSG00000114670|ENST00000383366|NEK11	MULTI-MSMS	OvCa9_classI_Rep2	2	501.29046630859375	2	501.288628	1000.5627	-0.80197	-0.00040202	4.3304	0.0021708	3.5285	0.0017688	501.2906816095173	135.63	4.8104	135.4	133.71	138.52	-0.22697					221	98	3	0	0	0	0.64427	1	13441	13441		26.693	1.2427	1	70595			31926	3033	26262	26287	35248	35248					0.06244455373735036
LLITTISLVT	10	Unmodified	_LLITTISLVT_					0	0	0			REV__tr|A0A553SFZ3|A0A553SFZ3_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09750PE=4SV=1	REV__tr|A0A553SFZ3|A0A553SFZ3_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09750PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.2997436523438	2	537.344458	1072.67436	-1.7579	-0.00094458	2.6468	0.0014223	0.88895	0.00047767	537.34573446281	55.521	1.0909	52.717	52.432	53.523	-2.804					52	21	4	0	0	0	0.026688	1	3917	3917		49.442	7.0454	1	138820	+		31927	29639	26263	26288	35249	35249					0.14093213002524863
LLITTNPW	8	Unmodified	_LLITTNPW_					0	0	0		ENST00000259318.7_1_9:112898482-112898686:+|nuORF	ENST00000259318.7_1_9:112898482-112898686:+|nuORF	ENST00000259318.7_1_9:112898482-112898686:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	479.268310546875	2	479.273835	956.533118	-4.2096	-0.0020176	-0.49923	-0.00023927	-4.7088	-0.0022568	479.2735553092833	154.4	0.73885	154.17	153.96	154.7	-0.22696					21	15	2	0	0	0	0.74595	1	15758	15758		14.664	0	1	32049			31928	9841	26264	26289	35250	35250					0.05311259419897851
LLIVAVLVVIV	11	Unmodified	_LLIVAVLVVIV_					0	0	0			REV__nc|ENSG00000168631|Q3MIW9-2|MUCL3	REV__nc|ENSG00000168631|Q3MIW9-2|MUCL3	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.8514404296875	2	575.91231	1149.81007	-1.0816	-0.00062291	-1.6056	-0.0009247	-2.6872	-0.0015476	575.9113642948345	88.761	0.631	86.63	86.51	87.141	-2.1309					17	12	2	0	0	0	0.025902	1	5464	5464		11.511	0	1	15368	+		31929	21389	26265	26290	35251	35251					0.24115532583982713
LLIVDINSF	9	Unmodified	_LLIVDINSF_					0	0	0			REV__tr|A0A553SFW6|A0A553SFW6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09675PE=4SV=1	REV__tr|A0A553SFW6|A0A553SFW6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09675PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.3599853515625	2	517.30005	1032.58555	1.9775	0.001023	-3.4609	-0.0017903	-1.4833	-0.00076732	517.2981542423845	136.86	0.68231	135.32	135.03	135.72	-1.5437					20	13	2	0	0	0	0.027118	1	13300	13300		84.916	5.4645	1	15853	+		31930	29631	26266	26291	35252	35252					0.07055797762859584
LLIVMLFF	8	Unmodified	_LLIVMLFF_					0	0	0		ENSG00000081248|ENST00000362061|CACNA1S;ERC1-CACNA1C|23|fusion;ERC1-CACNA1C|37|fusion;ERC1-CACNA1C|9|fusion;ERC1-CACNA1C|18|fusion;ERC1-CACNA1C|11|fusion;ERC1-CACNA1C|17|fusion;ERC1-CACNA1C|14|fusion;ERC1-CACNA1C|35|fusion;ERC1-CACNA1C|33|fusion;ERC1-CACNA1C|39|fusion;ERC1-CACNA1C|25|fusion;ERC1-CACNA1C|5|fusion;ERC1-CACNA1C|43|fusion;ERC1-CACNA1C|38|fusion;ERC1-CACNA1C|44|fusion;ERC1-CACNA1C|45|fusion;ERC1-CACNA1C|31|fusion;ERC1-CACNA1C|32|fusion;ERC1-CACNA1C|40|fusion;ERC1-CACNA1C|30|fusion;ERC1-CACNA1C|34|fusion;ERC1-CACNA1C|36|fusion;ERC1-CACNA1C|41|fusion;ERC1-CACNA1C|8|fusion;ERC1-CACNA1C|22|fusion;ERC1-CACNA1C|19|fusion;ERC1-CACNA1C|46|fusion;ERC1-CACNA1C|6|fusion;ERC1-CACNA1C|3|fusion;ERC1-CACNA1C|1|fusion;ERC1-CACNA1C|4|fusion;ERC1-CACNA1C|42|fusion;ERC1-CACNA1C|13|fusion;ERC1-CACNA1C|29|fusion;ERC1-CACNA1C|12|fusion;ERC1-CACNA1C|2|fusion;ERC1-CACNA1C|10|fusion;ERC1-CACNA1C|16|fusion;ERC1-CACNA1C|20|fusion;ERC1-CACNA1C|26|fusion;ERC1-CACNA1C|21|fusion;ERC1-CACNA1C|15|fusion;ERC1-CACNA1C|24|fusion;ERC1-CACNA1C|27|fusion;ERC1-CACNA1C|7|fusion;ERC1-CACNA1C|28|fusion;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;CACNA1C|p.V1586Wfs*9|1|0.1|ENSG00000151067|chr12:2666770-2666770|C/-|frameshift_variant;CACNA1C|p.S1498Afs*17|1|0.18|ENSG00000151067|chr12:2664940-2664940|A/-|frameshift_variant;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C	ENSG00000081248|ENST00000362061|CACNA1S;ERC1-CACNA1C|23|fusion;nc|ENSG00000151067|Q13936-26|CACNA1C	ERC1-CACNA1C|23|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.6213684082031	2	498.30355	994.592547	-0.47384	-0.00023612	0.28839	0.00014371	-0.18545	-9.2409E-05	498.30355187882884	23.962	0.49389	23.962	23.793	24.287	0					17	9	3	0	0	0	0.028476	1	416	416		24.504	0	1	127470			31931	14314;15092;1658	26267	26292	35253	35253					0.0950343910974425
LLIVTTPP	8	Unmodified	_LLIVTTPP_					0	0	0			REV__ENST00000479314.1_1_3:44968183-44974766:-|nuORF	REV__ENST00000479314.1_1_3:44968183-44974766:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	427.273681640625	2	427.273304	852.532055	1.6743	0.0007154	0.61065	0.00026091	2.285	0.00097632	427.27342207211217	147.57	2.1036	147.57	147.21	149.31	0					75	42	3	0	0	0	0.64377	1	17300	17300		54.765	2.4655	1	231720	+		31932	20894	26268	26293	35254	35254					0.09989045050997447
LLIVVGYGA	9	Unmodified	_LLIVVGYGA_					0	0	0		tr|A0A553SSS2|A0A553SSS2_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_03680PE=4SV=1	tr|A0A553SSS2|A0A553SSS2_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_03680PE=4SV=1	tr|A0A553SSS2|A0A553SSS2_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_03680PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	452.7781066894531	2	452.778754	903.542954	0.7017	0.00031771	-3.5047	-0.0015868	-2.803	-0.0012691	452.7770221997025	69.454	1.5004	66.639	66.362	67.862	-2.8143					60	29	4	0	0	0	0.61768	1	3105	3105		29.842	1.5873	1	218760			31933	34411	26269	26294	35255	35255					0.08732447425290957
LLIYIEKQLH	10	Unmodified	_LLIYIEKQLH_					0	0	0		ENSG00000171180|ENST00000641868|OR2M4	ENSG00000171180|ENST00000641868|OR2M4	ENSG00000171180|ENST00000641868|OR2M4	MULTI-MSMS	OvCa9_classI_Rep4_	4	423.9226989746094	3	423.923696	1268.74926	-1.1128	-0.00047175	-3.8307	-0.0016239	-4.9435	-0.0020957	423.9220487542345	43.946	1.8813	40.938	40.693	42.574	-3.0074					92	36	5	0	0	0	0.61634	1	2183	2183		40.058	3.7405	1	561530			31934	7180	26270	26295	35256	35256					0.1256339553374346
LLIYRIKVL	9	Unmodified	_LLIYRIKVL_					0	0	0			REV__tr|A0A553SM61|A0A553SM61_NIACICalcineurin-likephosphoesterasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21835PE=3SV=1	REV__tr|A0A553SM61|A0A553SM61_NIACICalcineurin-likephosphoesterasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21835PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.3093872070312	2	565.886627	1129.7587	1.32	0.00074697	0.24136	0.00013658	1.5614	0.00088355	565.8867555506906	124.46	0.96703	124.46	124.01	124.98	0					31	20	2	0	0	0	0.027462	1	14325	14325		7.6903	0	1	77642	+		31935	30299	26271	26296	35257	35257					0.19901208609940113
LLKAGVNYNT	10	Unmodified	_LLKAGVNYNT_					0	0	0		nc|ENSG00000284797|A0A2R8Y7Y5|CIST1	nc|ENSG00000284797|A0A2R8Y7Y5|CIST1	nc|ENSG00000284797|A0A2R8Y7Y5|CIST1	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.7976684570312	2	546.806031	1091.59751	2.6214	0.0014334	-0.65406	-0.00035764	1.9673	0.0010757	547.3047039948191	99.256	0.12283	99.256	99.195	99.318	0					4	2	2	0	0	0	0.026635	1	10962	10962		47.657	8.4045	1	101510			31936	15380	26272	26297	35258	35258					0.05537414506011373
LLKAHLQKLMS	11	Unmodified	_LLKAHLQKLMS_					0	0	0		ENST00000478124.5_1_7:30634537-30662079:+|nuORF;ENSG00000106105|ENST00000389266|GARS1;nc|ENSG00000106105|P41250-2|GARS1	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.3844604492188	2	641.389208	1280.76386	-6.1302	-0.0039319	-0.85565	-0.00054881	-6.9859	-0.0044807	641.3884310920467	161.98	1.0437	160.36	160.01	161.05	-1.6239					61	26	4	0	0	0	0.72479	1	16026	16026		18.262	4.125	1	67910			31937	2529	26273	26298	35259	35259					0.13471144410232228
LLKAIISPE	9	Unmodified	_LLKAIISPE_					0	0	0			REV__tr|A0A553SGS9|A0A553SGS9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=dcuSPE=4SV=1	REV__tr|A0A553SGS9|A0A553SGS9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=dcuSPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.28814697265625	2	492.310418	982.606283	0.94446	0.00046497	-1.2067	-0.00059408	-0.26225	-0.00012911	492.30967219894177	111.49	1.6265	111.35	110.78	112.41	-0.13961					71	32	4	0	0	0	0.027247	1	10579	10579		101.6	16.685	1	250700	+		31938	29734	26274	26299	35260	35260					0.11428388142519452
LLKAIISPE	9	Unmodified	_LLKAIISPE_					0	0	0			REV__tr|A0A553SGS9|A0A553SGS9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=dcuSPE=4SV=1	REV__tr|A0A553SGS9|A0A553SGS9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=dcuSPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	492.3046875	2	492.310418	982.606283	1.4638	0.00072063	-1.8376	-0.00090466	-0.37383	-0.00018404	492.30937834073904	112.47	1.7326	111.39	110.77	112.51	-1.0753					80	34	4	0	0	0	0.060996	3	8220	8214;8220;8228		112.41	16.924	1	297780	+		31939	29734	26274	26299	35261;35262;35263	35262					0.11428388142519452
LLKAIISPE	9	Unmodified	_LLKAIISPE_					0	0	0			REV__tr|A0A553SGS9|A0A553SGS9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=dcuSPE=4SV=1	REV__tr|A0A553SGS9|A0A553SGS9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=dcuSPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.3067321777344	2	492.310418	982.606283	0.58444	0.00028772	-1.1252	-0.00055393	-0.54072	-0.0002662	492.3097328370927	112.83	1.7263	111.38	110.8	112.53	-1.4461					76	34	4	0	0	0	0.070405	1	10438	10438		107.01	2.261	1	335940	+		31940	29734	26274	26299	35264	35264					0.11428388142519452
LLKALGFDTI	10	Unmodified	_LLKALGFDTI_					0	0	0			REV__ENSG00000146648|ENST00000275493|EGFR	REV__ENSG00000146648|ENST00000275493|EGFR	MULTI-SECPEP	OvCa9_classI_Rep3	3	546.3378295898438	2	545.828975	1089.6434	1.2001	0.00065503	-1.6757	-0.00091464	-0.47562	-0.00025961	545.8277787843953	124.63	1.0943	123.58	123.27	124.37	-1.0519					34	20	2	0	0	0	0.02658	1	9751	9751		30.318	0	1	31566	+		31941	20025	26275	26300	35265	35265					0.10216059688286805
LLKDGGVLSLI	11	Unmodified	_LLKDGGVLSLI_					0	0	0		ENST00000404287.2_1_6:129250530-129250623:-|nuORF	ENST00000404287.2_1_6:129250530-129250623:-|nuORF	ENST00000404287.2_1_6:129250530-129250623:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.3256225585938	2	564.355357	1126.69616	1.0437	0.00058903	2.4419	0.0013781	3.4856	0.0019671	564.8568182846725	102.82	0.1575	100.62	100.52	100.67	-2.1994					4	2	2	0	0	0	0.025814	1	9266	9266		27.047	4.0048	1	16651			31942	11450	26276	26301	35266	35266					0.13788017751107873
LLKDLIQHI	9	Unmodified	_LLKDLIQHI_					0	0	0		tr|A0A553STX4|A0A553STX4_NIACIABCtransporterpermease/substrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_05855PE=3SV=1	tr|A0A553STX4|A0A553STX4_NIACIABCtransporterpermease/substrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_05855PE=3SV=1	tr|A0A553STX4|A0A553STX4_NIACIABCtransporterpermease/substrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_05855PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	546.8400268554688	2	546.842416	1091.67028	-7.0439	-0.0038519	3.2968	0.0018028	-3.7471	-0.0020491	546.8440760274939	158.88	1.6198	157.61	157.26	158.88	-1.267					96	31	5	0	0	0	0.65476	1	13761	13761		25.45	0	1	890150			31943	34546	26277	26302	35267	35267					0.12811168299458586
LLKEEPASPG	10	Unmodified	_LLKEEPASPG_					0	0	0		ENSG00000102878|ENST00000521374|HSF4;ENST00000521314.5_1_16:67198707-67203685:+|nuORF	ENSG00000102878|ENST00000521374|HSF4	ENSG00000102878|ENST00000521374|HSF4	MULTI-MSMS	OvCa9_classI_Rep3	3	520.7838745117188	2	520.784764	1039.55498	-1.9205	-0.0010002	0.56253	0.00029296	-1.358	-0.00070721	520.7849648493748	140.2	1.1316	139.16	138.79	139.92	-1.0339					49	22	3	0	0	0	0.62299	1	11547	11547		39.253	2.0937	1	84780			31944	2261	26278	26303	35268	35268					0.036780193777985914
LLKELHSAVL	10	Unmodified	_LLKELHSAVL_					0	0	0			REV__ENST00000552390.5_1_12:57926966-57928919:-|nuORF	REV__ENST00000552390.5_1_12:57926966-57928919:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	561.8458251953125	2	561.847699	1121.68084	-5.3491	-0.0030054	1.7307	0.0009724	-3.6184	-0.002033	561.8485776281088	152.58	1.5019	151.61	151.19	152.7	-0.97299					81	30	4	0	0	0	0.62299	1	13040	13040		39.253	10.103	1	218830	+		31945	16273	26279	26304	35269	35269					0.12487150953893433
LLKEQVEVV	9	Unmodified	_LLKEQVEVV_					0	0	0			REV__ENST00000416465.5_1_22:31796666-31819296:+|nuORF	REV__ENST00000416465.5_1_22:31796666-31819296:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	528.8173828125	2	528.818607	1055.62266	-1.8461	-0.00097626	1.3839	0.00073181	-0.46227	-0.00024446	528.8193433242341	138.41	0.88116	137.35	137.05	137.93	-1.0595					31	17	2	0	0	0	0.44568	1	11318	11318		47.657	0	1	41430	+		31946	25546	26280	26305	35270	35270					0.09707469308614236
LLKEREEKV	9	Unmodified	_LLKEREEKV_					0	0	0		ENSG00000135334|ENST00000257787|AKIRIN2	ENSG00000135334|ENST00000257787|AKIRIN2	ENSG00000135334|ENST00000257787|AKIRIN2	MULTI-MSMS	OvCa99_classI_Rep5	1	572.34033203125	2	572.340238	1142.66592	-0.61962	-0.00035464	0.068616	3.9272E-05	-0.55101	-0.00031536	572.3402867694156	35.222	0.74827	35.222	35.004	35.753	0					37	15	4	0	0	0	0.31122	1	1757	1757		61.691	11.658	1	771190			31947	4367	26281	26306	35271	35271					0.10029659085898857
LLKFEKINE	9	Unmodified	_LLKFEKINE_					0	0	0			REV__tr|A0A7D6W2E1|A0A7D6W2E1_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05930PE=3SV=1	REV__tr|A0A7D6W2E1|A0A7D6W2E1_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05930PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3271484375	2	567.331882	1132.64921	-2.6412	-0.0014984	-1.2123	-0.00068778	-3.8535	-0.0021862	567.3310908608092	141.92	3.9983	140.91	138.91	142.91	-1.0106					224	80	5	0	0	0	0.63422	1	11785	11785		27.882	0	1	127690	+		31948	31896	26282	26307	35272	35272					0.0881915819995811
LLKFLGTGIN	10	Unmodified	_LLKFLGTGIN_					0	0	0			REV__ENSG00000148606|ENST00000372371|POLR3A	REV__ENSG00000148606|ENST00000372371|POLR3A	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.326171875	2	538.329142	1074.64373	-6.8958	-0.0037122	3.0059	0.0016182	-3.8899	-0.002094	538.3306472316852	159.34	1.4158	157.75	157.44	158.85	-1.5859					96	33	4	0	0	0	0.73378	1	15742	15742		26.693	1.2427	1	453340	+		31949	20118	26283	26308	35273	35273					0.10939479408148145
LLKFRRQYYKK	11	Unmodified	_LLKFRRQYYKK_					0	0	0		ENSG00000185875|ENST00000376356|THNSL1	ENSG00000185875|ENST00000376356|THNSL1	ENSG00000185875|ENST00000376356|THNSL1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.31640625	3	514.980427	1541.91945	-0.19413	-9.9975E-05	1.2158	0.00062609	1.0216	0.00052612	514.9810583979067	64.592	1.1324	64.592	64.294	65.426	0					94	27	6	0	0	0	0.70848	1	5868	5868		26.75	8.2187	1	12265000			31950	8294	26284	26309	35274	35274					0.17016931256034695
LLKGKEEN	8	Unmodified	_LLKGKEEN_					0	0	0		ENSG00000103479|ENST00000262133|RBL2;nc|ENSG00000103479|Q08999-2|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	MULTI-MSMS	OvCa99_classI_Rep5	1	465.7677917480469	2	465.766374	929.518196	-0.34743	-0.00016182	0.36574	0.00017035	0.018305	8.5261E-06	465.7664090700968	49.183	1.0927	49.183	48.895	49.988	0					52	24	4	0	0	0	0.31378	1	3666	3666		104.75	1.9732	1	2814600			31951	2318	26285	26310	35275	35275					0.050617675518992655
LLKGSFSEQGI	11	Unmodified	_LLKGSFSEQGI_					0	0	0		nc|ENSG00000143870|Q15084-3|PDIA6;ENSG00000143870|ENST00000272227|PDIA6;nc|ENSG00000143870|Q15084-4|PDIA6;nc|ENSG00000143870|Q15084-5|PDIA6;nc|ENSG00000143870|Q15084-2|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.8214111328125	2	589.824421	1177.63429	-0.41967	-0.00024753	-0.30536	-0.00018011	-0.72502	-0.00042764	589.8242607771954	76.795	1.6406	73.856	73.598	75.238	-2.9389					107	33	6	0	0	0	0.5804	1	6155	6155		46.457	6.3986	1	1545200			31952	5103	26286	26311	35276	35276					0.052576663319541694
LLKGVPTT	8	Unmodified	_LLKGVPTT_					0	0	0			REV__tr|A0A7D6VXR5|A0A7D6VXR5_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_09785PE=3SV=1	REV__tr|A0A7D6VXR5|A0A7D6VXR5_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_09785PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	414.7615966796875	2	414.763104	827.511654	-0.47497	-0.000197	-2.6059	-0.0010808	-3.0808	-0.0012778	414.761930419043	140.08	2.1671	139.86	139.4	141.57	-0.22696					123	43	4	0	0	0	0.75915	1	13976	13976		20.482	0	1	474850	+		31953	31787	26287	26312	35277	35277					0.09099874391165486
LLKHKVRVMD	10	Unmodified	_LLKHKVRVMD_					0	0	0			REV__ENSG00000163541|ENST00000393868|SUCLG1	REV__ENSG00000163541|ENST00000393868|SUCLG1	MULTI-MSMS	OvCa9_classI_Rep3	3	619.868408203125	2	619.873725	1237.7329	-3.6059	-0.0022352	-3.3723	-0.0020904	-6.9782	-0.0043256	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.72319	1	12841	12841		27.882	4.3595	1	664560	+		31954	20850	26288	26313	35278	35278					0.12353991096006212
LLKHKVRVMD	10	Unmodified	_LLKHKVRVMD_					0	0	0			REV__ENSG00000163541|ENST00000393868|SUCLG1	REV__ENSG00000163541|ENST00000393868|SUCLG1	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8677368164062	2	619.873725	1237.7329	-3.1194	-0.0019336	-3.9204	-0.0024301	-7.0397	-0.0043637	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.78463	1	14988	14988		20.947	2.6225	1	806750	+		31955	20850	26288	26313	35279	35279					0.12353991096006212
LLKIEDLQ	8	Unmodified	_LLKIEDLQ_					0	0	0		tr|A0A553STN8|A0A553STN8_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_05375PE=3SV=1	tr|A0A553STN8|A0A553STN8_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_05375PE=3SV=1	tr|A0A553STN8|A0A553STN8_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_05375PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.2918701171875	2	486.292225	970.569897	-1.0418	-0.0005066	0.87582	0.0004259	-0.16594	-8.0694E-05	486.2924735979231	100.47	1.0086	98.208	97.875	98.883	-2.2665					53	19	4	0	0	0	0.56195	1	9017	9017		71.296	0	1	275810			31956	34512	26289	26314	35280	35280					0.08343511245811897
LLKIFCVFR	9	Unmodified	_LLKIFCVFR_					0	0	0		ENSG00000088538|ENST00000266037|DOCK3;DOCK3|p.K1465Pfs*18|1|0.29|ENSG00000088538|chr3:51356230-51356231|-/TCCCCTCACCTTTCACACACAGCTTCCTTGGGGACCA|frameshift_variant	ENSG00000088538|ENST00000266037|DOCK3	ENSG00000088538|ENST00000266037|DOCK3	MULTI-MSMS	OvCa9_classI_Rep3	3	569.8450927734375	2	569.843905	1137.67326	0.70877	0.00040389	2.5736	0.0014665	3.2823	0.0018704	569.8452383624614	66.591	2.2644	63.645	63.265	65.53	-2.9459					89	44	4	0	0	0	0.61208	1	2741	2741		30.504	2.6214	1	226750			31957	1791	26290	26315	35281	35281					0.10992720152603397
LLKIPSTG	8	Unmodified	_LLKIPSTG_					0	0	0			REV__METAP1|p.Q127P|1|0.11|ENSG00000164024|chr4:99039413-99039413|A/C|missense_variant	REV__METAP1|p.Q127P|1|0.11|ENSG00000164024|chr4:99039413-99039413|A/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	414.76165771484375	2	414.763104	827.511654	-0.47497	-0.000197	-2.6059	-0.0010808	-3.0808	-0.0012778	414.761930419043	140.08	2.1671	139.86	139.4	141.57	-0.22696					123	43	4	0	0	0	0.75241	1	14072	14072		25.45	0	1	474850	+		31958	28664	26291	26316	35282	35282					0.09099874391176854
LLKIPSTG	8	Unmodified	_LLKIPSTG_					0	0	0			REV__METAP1|p.Q127P|1|0.11|ENSG00000164024|chr4:99039413-99039413|A/C|missense_variant	REV__METAP1|p.Q127P|1|0.11|ENSG00000164024|chr4:99039413-99039413|A/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	414.76214599609375	2	414.763104	827.511654	-1.3763	-0.00057084	-1.7682	-0.00073337	-3.1445	-0.0013042	414.7623056204016	140.83	3.4972	139.8	137.66	141.16	-1.0339					138	70	4	0	0	0	0.73938	1	11669	11669		31.955	0	1	1080700	+		31959	28664	26291	26316	35283	35283					0.09099874391176854
LLKKDKPP	8	Unmodified	_LLKKDKPP_					0	0	0			REV__ENSG00000160469|ENST00000309383|BRSK1	REV__ENSG00000160469|ENST00000309383|BRSK1	MULTI-MSMS	OvCa99_classI_Rep5	1	469.8065185546875	2	469.805303	937.596052	2.4521	0.001152	-0.050937	-2.3931E-05	2.4012	0.0011281	469.8051186916965	87.668	1.0066	87.668	87.42	88.426	0					56	23	3	0	0	0	0.2826	2	9287	9287;9316		110.34	3.922	1	2660300	+		31960	20662	26292	26317	35284;35285	35284					0.12475825207934577
LLKKEKMNLL	10	Unmodified	_LLKKEKMNLL_					0	0	0		nc|ENSG00000102904|Q2TAA8|TSNAXIP1;ENSG00000102904|ENST00000561639|TSNAXIP1;ENST00000487120.5_1_16:67848301-67859829:+|nuORF;ENST00000466164.5_1_16:67840937-67859829:+|nuORF	nc|ENSG00000102904|Q2TAA8|TSNAXIP1	nc|ENSG00000102904|Q2TAA8|TSNAXIP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	409.6080017089844	3	410.593181	1228.75771	1.4535	0.0005968	-4.3815	-0.001799	-2.928	-0.0012022	410.59133318017587	110.97	0.68384	109.37	109.07	109.75	-1.6011					16	12	2	0	0	0	0.026782	1	10244	10244		45.972	15.655	1	14585			31961	2266	26293	26318	35286	35286					0.15248626178731683
LLKKENSIL	9	Unmodified	_LLKKENSIL_					0	0	0		tr|A0A7D6VTS6|A0A7D6VTS6_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_18070PE=3SV=1	tr|A0A7D6VTS6|A0A7D6VTS6_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_18070PE=3SV=1	tr|A0A7D6VTS6|A0A7D6VTS6_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_18070PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	529.3344116210938	2	529.334424	1056.6543	-0.97175	-0.00051438	1.2122	0.00064166	0.24045	0.00012728	529.334637771083	122.14	1.1361	121.93	121.67	122.81	-0.21803					50	22	3	0	0	0	0.65371	1	11839	11839		25.574	7.2496	1	98924			31962	35138	26294	26319	35287	35287					0.12823462062578983
LLKKGNPLI	9	Unmodified	_LLKKGNPLI_					0	0	0			REV__tr|A0A553SUH8|A0A553SUH8_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_07025PE=3SV=1	REV__tr|A0A553SUH8|A0A553SUH8_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_07025PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3333435058594	2	498.334227	994.653902	0.2425	0.00012085	-0.5271	-0.00026267	-0.2846	-0.00014182	498.33387359588454	132.52	1.8753	132.29	131.93	133.81	-0.22696					110	37	5	0	0	0	0.42057	1	13165	13165		50.025	0.58299	1	948910	+		31963	31080	26295	26320	35288	35288					0.15636087133384535
LLKKGNPLI	9	Unmodified	_LLKKGNPLI_					0	0	0			REV__tr|A0A553SUH8|A0A553SUH8_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_07025PE=3SV=1	REV__tr|A0A553SUH8|A0A553SUH8_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_07025PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3338623046875	2	498.334227	994.653902	-0.6989	-0.00034829	0.47295	0.00023569	-0.22596	-0.0001126	498.33435878229506	133.81	2.0717	132.69	132.27	134.34	-1.1226					102	41	4	0	0	0	0.34496	1	10812	10812		57.811	4.4598	1	981140	+		31964	31080	26295	26320	35289	35289					0.15636087133384535
LLKKKSSESTT	11	Unmodified	_LLKKKSSESTT_					0	0	0		ENSG00000171487|ENST00000390649|NLRP5	ENSG00000171487|ENST00000390649|NLRP5	ENSG00000171487|ENST00000390649|NLRP5	MULTI-MSMS	OvCa9_classI_Rep2	2	611.3556518554688	2	611.356085	1220.69762	-3.7398	-0.0022864	3.7676	0.0023033	0.027731	1.6954E-05	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.72064	1	15207	15207		22.58	4.3176	1	331570			31965	7201	26296	26321	35290	35290					0.09609607049173974
LLKKLMQTG	9	Unmodified	_LLKKLMQTG_					0	0	0			REV__tr|A0A7D6ZWY7|A0A7D6ZWY7_9CLOTLytictransglycosylasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20010PE=3SV=1	REV__tr|A0A7D6ZWY7|A0A7D6ZWY7_9CLOTLytictransglycosylasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20010PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.3142700195312	2	516.31772	1030.62089	-5.454	-0.002816	-1.8366	-0.00094829	-7.2906	-0.0037643	516.3166829666766	156.94	1.6079	155.39	155.01	156.62	-1.545					108	44	5	0	0	0	0.6653	1	15535	15535		24.203	3.7209	1	509660	+		31966	32305	26297	26322	35291	35291					0.10680137019016911
LLKKNWKGL	9	Unmodified	_LLKKNWKGL_					0	0	0			REV__ENST00000475752.1_1_15:32976717-32988807:+|nuORF	REV__ENST00000475752.1_1_15:32976717-32988807:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.8609008789062	2	550.352951	1098.69135	0.52985	0.0002916	-4.3721	-0.0024062	-3.8422	-0.0021146	550.3504115061259	32.322	0.84552	29.626	29.457	30.302	-2.6954					27	20	2	0	0	0	0.027462	1	830	830		30.504	7.924	1	11201	+		31967	21237	26298	26323	35292	35292					0.14595178398985809
LLKLAGDE	8	Unmodified	_LLKLAGDE_					0	0	0		tr|A0A7D6ZGT2|A0A7D6ZGT2_9CLOTNucleoidocclusionproteinOS=ClostridiumintestinaleOX=36845GN=nocPE=3SV=1	tr|A0A7D6ZGT2|A0A7D6ZGT2_9CLOTNucleoidocclusionproteinOS=ClostridiumintestinaleOX=36845GN=nocPE=3SV=1	tr|A0A7D6ZGT2|A0A7D6ZGT2_9CLOTNucleoidocclusionproteinOS=ClostridiumintestinaleOX=36845GN=nocPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	429.7488098144531	2	429.750193	857.485833	-0.34003	-0.00014613	-1.8302	-0.00078655	-2.1703	-0.00093267	429.7491781580128	31.562	0.84	28.853	28.69	29.53	-2.7097					29	16	3	0	0	0	0.73626	1	965	965		33.516	0	1	69904			31968	35550	26299	26324	35293	35293					0.05138980148910832
LLKLFKLLHL	10	Unmodified	_LLKLFKLLHL_					0	0	0			REV__ENST00000589042.5_3_2:179517806-179527536:-|nuORF	REV__ENST00000589042.5_3_2:179517806-179527536:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.26220703125	3	413.284677	1236.8322	0.21581	8.919E-05	3.8809	0.0016039	4.0967	0.0016931	413.2861530768228	20.332	0.6496	18.994	18.762	19.412	-1.3386					21	12	2	0	0	0	0.027001	1	45	45		35.152	14.315	1	17724	+		31969	27899	26300	26325	35294	35294					0.22325757052408335
LLKLLKTL	8	Unmodified	_LLKLLKTL_					0	0	0		nc|ENSG00000162923|Q9H7D7-2|WDR26;nc|ENSG00000162923|Q9H7D7|WDR26;ENSG00000162923|ENST00000414423|WDR26;ENST00000486652.5_1_1:224588736-224599215:-|nuORF	nc|ENSG00000162923|Q9H7D7-2|WDR26	nc|ENSG00000162923|Q9H7D7-2|WDR26	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.3092041015625	2	471.341521	940.668489	-0.31417	-0.00014808	0.64803	0.00030544	0.33385	0.00015736	471.34152479931686	24.323	0.24821	24.323	24.237	24.486	0					8	4	2	0	0	0	0.028476	1	454	454		1.3276	0	1	14104			31970	6247	26301	26326	35295	35295					0.19578159281513763
LLKLLLPLL	9	Unmodified	_LLKLLLPLL_					0	0	0		MED12|p.K1768Qfs*3|1|0.17|ENSG00000184634|chrX:71136550-71136551|-/C|frameshift_variant;nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	MED12|p.K1768Qfs*3|1|0.17|ENSG00000184634|chrX:71136550-71136551|-/C|frameshift_variant	MED12|p.K1768Qfs*3|1|0.17|ENSG00000184634|chrX:71136550-71136551|-/C|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	518.3809204101562	2	518.380646	1034.74674	0.59488	0.00030837	0.86192	0.0004468	1.4568	0.00075517	518.3809111202168	156.92	0.7509	156.92	156.65	157.4	0					29	14	3	0	0	0	0.44294	1	18389	18389		47.916	1.9636	1	111380			31971	8177	26302	26327	35296	35296					0.23075591866745526
LLKLPSSGAN	10	Unmodified	_LLKLPSSGAN_					0	0	0		HERVH-int_dup93|chr1:54900195-54903183:-|1.1315455096136964|0.040738276592419|4.8|412.0|62|3|sense	HERVH-int_dup93|chr1:54900195-54903183:-|1.1315455096136964|0.040738276592419|4.8|412.0|62|3|sense	HERVH-int_dup93|chr1:54900195-54903183:-|1.1315455096136964|0.040738276592419|4.8|412.0|62|3|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	500.2962951660156	2	500.295299	998.576045	0.69928	0.00034985	-1.1331	-0.00056686	-0.43378	-0.00021702	500.2946639686594	87.294	1.2874	85.863	85.438	86.726	-1.4311					65	24	4	0	0	0	0.42082	1	7621	7621		65.465	3.358	1	359970			31972	14448	26303	26328	35297	35297					0.07670029477321805
LLKLRYFI	8	Unmodified	_LLKLRYFI_					0	0	0		ENST00000338754.8_2_22:26921960-26922032:-|nuORF	ENST00000338754.8_2_22:26921960-26922032:-|nuORF	ENST00000338754.8_2_22:26921960-26922032:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.2855224609375	2	533.344595	1064.67464	2.3524	0.0012547	-4.0784	-0.0021752	-1.726	-0.00092053	533.3422275901289	108.24	0.8582	108.24	107.94	108.8	0					49	19	4	0	0	0	0.028476	1	12193	12193		42.474	6.8562	1	1895100			31973	10542	26304	26329	35298	35298					0.14488677513008952
LLKLTIDS	8	Unmodified	_LLKLTIDS_					0	0	0			REV__tr|A0A7D6W3R7|A0A7D6W3R7_9CLOTNucleoside/nucleotidekinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10940PE=4SV=1	REV__tr|A0A7D6W3R7|A0A7D6W3R7_9CLOTNucleoside/nucleotidekinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10940PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	451.780029296875	2	451.781493	901.548434	-1.186	-0.00053581	-2.2466	-0.001015	-3.4325	-0.0015508	451.78046832513644	137.21	1.1187	136.13	135.81	136.93	-1.0858					37	22	2	0	0	0	0.73288	1	11178	11178		35.201	0	1	36642	+		31974	31922	26305	26330	35299	35299					0.09372126217078858
LLKMPRDV	8	Unmodified	_LLKMPRDV_					0	0	0		ENST00000496669.1_1_3:87101304-87101523:-|nuORF	ENST00000496669.1_1_3:87101304-87101523:-|nuORF	ENST00000496669.1_1_3:87101304-87101523:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	486.2896423339844	2	486.288963	970.563372	-1.3386	-0.00065093	1.302	0.00063316	-0.036553	-1.7776E-05	486.28968430992785	96.173	2.6618	94.345	93.531	96.193	-1.8286					91	52	2	0	0	0	0.47599	1	6324	6324		79.939	3.0926	1	3287800			31975	12792	26306	26331	35300	35300					0.07691294813446348
LLKPVWIR	8	Unmodified	_LLKPVWIR_					0	0	0		nc|ENSG00000113360|Q9NRR4-3|DROSHA;nc|ENSG00000113360|Q9NRR4-2|DROSHA;nc|ENSG00000113360|Q9NRR4-4|DROSHA;DROSHA|p.E1354Vfs*16|1|0.29|ENSG00000113360|chr5:31401496-31401497|-/TGTA|frameshift_variant;ENSG00000113360|ENST00000344624|DROSHA	nc|ENSG00000113360|Q9NRR4-3|DROSHA	nc|ENSG00000113360|Q9NRR4-3|DROSHA	MULTI-SECPEP	OvCa9_classI_Rep3	3	512.254638671875	2	512.836937	1023.65932	-0.88399	-0.00045334	4.3512	0.0022314	3.4672	0.0017781	513.3397739100033	86.597	0.25097	84.42	84.28	84.531	-2.1768					6	4	2	0	0	0	0.028476	1	5170	5170		33.516	13.034	1	15663			31976	761	26307	26332	35301	35301					0.14843810715842665
LLKQEKELP	9	Unmodified	_LLKQEKELP_					0	0	0			REV__PKHD1|p.A3983Kfs*44|1|0.16|ENSG00000170927|chr6:51619327-51619360|CAGGTACACCTGCTGAGCAGGAGCACCTGGAGCA/-|frameshift_variant	REV__PKHD1|p.A3983Kfs*44|1|0.16|ENSG00000170927|chr6:51619327-51619360|CAGGTACACCTGCTGAGCAGGAGCACCTGGAGCA/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.3277587890625	2	549.331882	1096.64921	1.1057	0.0006074	2.9787	0.0016363	4.0844	0.0022437	549.3329936773578	86.214	0.74107	83.568	83.293	84.035	-2.6463					16	14	2	0	0	0	0.027462	1	7328	7328		30.504	8.5438	1	33858	+		31977	21578	26308	26333	35302	35302					0.10475158199960788
LLKQLPSWED	10	Unmodified	_LLKQLPSWED_					0	0	0		ENST00000595638.1_1_19:51485457-51485655:-|nuORF	ENST00000595638.1_1_19:51485457-51485655:-|nuORF	ENST00000595638.1_1_19:51485457-51485655:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	614.7402954101562	2	614.832246	1227.64994	-1.2455	-0.0007658	-3.4468	-0.0021192	-4.6923	-0.002885	614.830034448618	119.09	0.61658	117.74	117.47	118.09	-1.3444					18	11	2	0	0	0	0.026723	1	11204	11204		79.451	0	1	26172			31978	14177	26309	26334	35303	35303					0.045219528489724325
LLKQNKTK	8	Unmodified	_LLKQNKTK_					0	0	0			REV__ENSG00000163710|ENST00000295992|PCOLCE2	REV__ENSG00000163710|ENST00000295992|PCOLCE2	MULTI-MSMS	OvCa9_classI_Rep2	2	486.8128967285156	2	486.813659	971.612765	-0.51721	-0.00025178	0.25856	0.00012587	-0.25865	-0.00012592	486.8136606093423	57.145	2.3904	54.353	53.634	56.024	-2.792					128	47	4	0	0	0	0.47599	1	4059	4059		79.939	0	1	495540	+		31979	20878	26310	26335	35304	35304					0.12582326093900065
LLKRFTTIISE	11	Unmodified	_LLKRFTTIISE_					0	0	0			REV__tr|A0A553SQL9|A0A553SQL9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07880PE=4SV=1	REV__tr|A0A553SQL9|A0A553SQL9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07880PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	440.2330322265625	3	440.934372	1319.78129	-0.51744	-0.00022816	0.46235	0.00020386	-0.055097	-2.4294E-05	440.9344773625588	39.795	0.75253	36.84	36.616	37.368	-2.9541					36	14	4	0	0	0	0.026101	1	1673	1673		7.6794	0	1	62945	+		31980	30642	26311	26336	35305	35305					0.13418763216895968
LLKRGIPEV	9	Unmodified	_LLKRGIPEV_					0	0	0			REV__ENST00000525625.1_1_11:125884983-125893371:-|nuORF	REV__ENST00000525625.1_1_11:125884983-125893371:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.7872314453125	2	512.829309	1023.64407	-0.76285	-0.00039121	1.2859	0.00065942	0.52301	0.00026821	512.8298794381398	109.23	0.60736	107.51	107.18	107.78	-1.7256					18	11	2	0	0	0	0.027462	1	10043	10043		25.45	1.2474	1	18209	+		31981	16769	26312	26337	35306	35306					0.13318899127989425
LLKRGIPEV	9	Unmodified	_LLKRGIPEV_					0	0	0			REV__ENST00000525625.1_1_11:125884983-125893371:-|nuORF	REV__ENST00000525625.1_1_11:125884983-125893371:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	512.829309	1023.64407	0.15894	8.151E-05	-0.66049	-0.00033872	-0.50154	-0.00025721	512.8290161672885	107.47	0.48129	107.16	106.97	107.45	-0.30836	-0.19928	-0.0008354	NaN	38.806	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18052	+		31982	16769	26312	26337							0.13318899127989425
LLKRGIPEV	9	Unmodified	_LLKRGIPEV_					0	0	0			REV__ENST00000525625.1_1_11:125884983-125893371:-|nuORF	REV__ENST00000525625.1_1_11:125884983-125893371:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	512.829309	1023.64407	0.21098	0.0001082	0.26889	0.00013789	0.47987	0.00024609	512.8292164546477	108.62	0.44816	107.42	107.17	107.61	-1.1978	0.055232	0.00011782	NaN	38.806	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14728	+		31983	16769	26312	26337							0.13318899127989425
LLKRLPRKVEW	11	Unmodified	_LLKRLPRKVEW_					0	0	0			REV__ENSG00000141639|ENST00000400384|MAPK4	REV__ENSG00000141639|ENST00000400384|MAPK4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.770751953125	3	479.973273	1436.89799	-0.93492	-0.00044874	-2.3265	-0.0011166	-3.2614	-0.0015654	479.9720633176863	55.39	0.55824	52.096	51.854	52.412	-3.2944					20	10	3	0	0	0	0.026497	1	3471	3471		6.001	0	1	39661	+		31984	19754	26313	26338	35307	35307					0.19701546227292965
LLKRRKRHWRR	11	Unmodified	_LLKRRKRHWRR_					0	0	0			REV__ENST00000416673.6_1_2:114369763-114384446:-|nuORF	REV__ENST00000416673.6_1_2:114369763-114384446:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	401.2344970703125	4	402.010376	1604.0124	2.8554	0.0011479	-1.8333	-0.00073702	1.022	0.00041087	402.2602349364737	35.166	0.40183	32.317	32.089	32.491	-2.849					10	7	2	0	0	0	0.02656	1	1084	1084		0.31226	0.31226	1	6134.4	+		31985	25551	26314	26339	35308	35308					0.23455293552592593
LLKRWLIRDP	10	Unmodified	_LLKRWLIRDP_					0	0	0			REV__ENST00000490885.6_1_1:186648321-186648495:-|nuORF	REV__ENST00000490885.6_1_1:186648321-186648495:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	437.2743225097656	3	437.274952	1308.80303	-0.13517	-5.9107E-05	-3.2119	-0.0014045	-3.3471	-0.0014636	437.2735418163394	68.807	1.9959	66.187	65.77	67.766	-2.6203					109	39	4	0	0	0	0.73063	1	5442	5442		27.047	0.29761	1	800580	+		31986	26663	26315	26340	35309	35309					0.16097612756107083
LLKSKINGL	9	Unmodified	_LLKSKINGL_					0	0	0		tr|A0A7D6VTT6|A0A7D6VTT6_9CLOTExopolyphosphataseOS=ClostridiumintestinaleOX=36845GN=ppxPE=3SV=1	tr|A0A7D6VTT6|A0A7D6VTT6_9CLOTExopolyphosphataseOS=ClostridiumintestinaleOX=36845GN=ppxPE=3SV=1	tr|A0A7D6VTT6|A0A7D6VTT6_9CLOTExopolyphosphataseOS=ClostridiumintestinaleOX=36845GN=ppxPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.8319091796875	2	493.32386	984.633166	2.4033	0.0011856	-0.73381	-0.00036201	1.6695	0.00082358	493.32351326866893	75.702	0.51297	75.702	75.523	76.036	0					16	12	2	0	0	0	0.027462	1	7531	7531		25.574	0	1	391810			31987	35142	26316	26341	35310	35310					0.1402349675371397
LLKSKLLVL	9	Unmodified	_LLKSKLLVL_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MSMS	OvCa99_classI_Rep5	1	513.8690795898438	2	513.867903	1025.72125	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.6	1	107.6	107.1	108.1	0								0	0	0	0.032201	1	12144	12144		87.754	14.875	1				31988	1219	26317	26342	35311	35311					0.20942117344316102
LLKSKVGG	8	Unmodified	_LLKSKVGG_					0	0	0		tr|A0A7D6VPR0|A0A7D6VPR0_9CLOTHistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19790PE=4SV=1	tr|A0A7D6VPR0|A0A7D6VPR0_9CLOTHistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19790PE=4SV=1	tr|A0A7D6VPR0|A0A7D6VPR0_9CLOTHistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19790PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	401.26202392578125	2	401.263271	800.511988	1.296	0.00052003	-4.2066	-0.001688	-2.9106	-0.0011679	401.26147123184654	136.26	1.7613	136.04	135.22	136.99	-0.22696					76	35	3	0	0	0	0.74595	4	13486	13480;13486;13546;13593		20.482	1.1219	1	533840			31989	34790	26318	26343	35312;35313;35314;35315	35313					0.10375294111054245
LLKSKVGG	8	Unmodified	_LLKSKVGG_					0	0	0		tr|A0A7D6VPR0|A0A7D6VPR0_9CLOTHistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19790PE=4SV=1	tr|A0A7D6VPR0|A0A7D6VPR0_9CLOTHistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19790PE=4SV=1	tr|A0A7D6VPR0|A0A7D6VPR0_9CLOTHistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19790PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	401.2629089355469	2	401.263271	800.511988	-0.21441	-8.6037E-05	-2.9352	-0.0011778	-3.1496	-0.0012638	401.26203375308216	137.05	1.2653	135.96	135.51	136.78	-1.0858					61	25	3	0	0	0	0.73417	2	11181	11151;11181		20.482	6.7065	1	224680			31990	34790	26318	26343	35316;35317	35317					0.10375294111054245
LLKSLFFGAF	10	Unmodified	_LLKSLFFGAF_					0	0	0			REV__ENST00000470408.5_1_7:157015856-157060446:+|nuORF	REV__ENST00000470408.5_1_7:157015856-157060446:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.7987670898438	2	571.83406	1141.65357	1.2797	0.0007318	4.3723	0.0025002	5.652	0.003232	571.8368754637265	111.24	0.49281	111.24	111.07	111.56	0					13	10	2	0	0	0	0.028125	1	12682	12682		95.815	26.969	1	65082	+		31991	16464	26319	26344	35318	35318					0.08840667413505798
LLKSQKLLI	9	Unmodified	_LLKSQKLLI_					0	0	0		PLCB4|p.Q1063_Q1064insSQ|1|0.18|ENSG00000101333|chr20:9459783-9459784|-/TCAGAG|inframe_insertion	PLCB4|p.Q1063_Q1064insSQ|1|0.18|ENSG00000101333|chr20:9459783-9459784|-/TCAGAG|inframe_insertion	PLCB4|p.Q1063_Q1064insSQ|1|0.18|ENSG00000101333|chr20:9459783-9459784|-/TCAGAG|inframe_insertion	MULTI-MSMS	OvCa99_classI_Rep5	1	528.36474609375	2	528.362985	1054.71142	0.60322	0.00031872	1.1054	0.00058404	1.7086	0.00090276	528.363382275887	159.06	1.8145	159.06	158.69	160.51	0					87	36	4	0	0	0	0.29717	1	18695	18695		63.306	2.3343	1	385540			31992	15506	26320	26345	35319	35319					0.18624929338966467
LLKSSKEEL	9	Unmodified	_LLKSSKEEL_					0	0	0		ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.2686767578125	2	523.808239	1045.60193	-1.2786	-0.00066975	-0.18332	-9.6027E-05	-1.4619	-0.00076578	523.8080519803897	71.093	1.1669	67.637	67.44	68.607	-3.4563					29	23	2	0	0	0	0.027462	1	5450	5450		25.574	7.2496	1	70513			31993	3276	26321	26346	35320	35320					0.0809487892895504
LLKSTLVLM	9	Unmodified	_LLKSTLVLM_					0	0	0		ENSG00000160801|ENST00000449590|PTH1R	ENSG00000160801|ENST00000449590|PTH1R	ENSG00000160801|ENST00000449590|PTH1R	MULTI-MSMS	OvCa99_classI_Rep5	1	509.3231201171875	2	509.322471	1016.63039	1.6932	0.00086236	-0.46413	-0.00023639	1.229	0.00062597	509.3222483273032	129.75	3.5873	129.75	129.45	133.04	0					127	75	2	0	0	0	0.27546	1	15088	15088		65.803	0	1	9824000			31994	6094	26322	26347	35321	35321					0.12273905304550681
LLKSVCGHLEN	11	Unmodified	_LLKSVCGHLEN_					0	0	0		ENSG00000155324|ENST00000285689|GRAMD2B;ENST00000504859.5_1_5:125807941-125819298:+|nuORF;nc|ENSG00000155324|Q96HH9-5|GRAMD2B;nc|ENSG00000155324|Q96HH9-4|GRAMD2B;nc|ENSG00000155324|Q96HH9-2|GRAMD2B;nc|ENSG00000155324|Q96HH9-3|GRAMD2B	ENSG00000155324|ENST00000285689|GRAMD2B	ENSG00000155324|ENST00000285689|GRAMD2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	607.3463745117188	2	606.823898	1211.63324	1.3468	0.00081727	1.4188	0.00086098	2.7656	0.0016783	606.8244100578602	123.61	0.96943	123.61	122.91	123.87	0					46	20	4	0	0	0	0.02523	1	14212	14212		31.634	0	1	336750			31995	5780	26323	26348	35322	35322					0.035891286913965814
LLKTIYEVTK	10	Unmodified	_LLKTIYEVTK_					0	0	0			REV__nc|ENSG00000175727|Q9HAP2-4|MLXIP	REV__nc|ENSG00000175727|Q9HAP2-4|MLXIP	MULTI-MSMS	OvCa9_classI_Rep3	3	604.3670043945312	2	604.368464	1206.72238	-4.9805	-0.00301	3.3727	0.0020384	-1.6078	-0.00097168	604.3703796830155	164	0.40314	162.6	162.34	162.74	-1.3926					15	9	2	0	0	0	0.83835	1	14325	14325		14.137	0	1	631580	+		31996	29017	26324	26349	35323	35323					0.12728286922538246
LLKTLLDIPAN	11	Unmodified	_LLKTLLDIPAN_					0	0	0		nc|ENSG00000070540|Q5MNZ9-2|WIPI1;ENSG00000070540|ENST00000262139|WIPI1;ENST00000589459.5_1_17:66423364-66453609:-|nuORF;ENST00000586815.1_1_17:66429656-66453562:-|nuORF	nc|ENSG00000070540|Q5MNZ9-2|WIPI1	nc|ENSG00000070540|Q5MNZ9-2|WIPI1	MULTI-MSMS	OvCa9_classI_Rep4_	4	605.8707885742188	2	605.873914	1209.73327	-4.8731	-0.0029525	1.7175	0.0010406	-3.1556	-0.0019119	605.8747875580638	157.58	1.169	156.04	155.73	156.9	-1.545					92	31	4	0	0	0	0.71498	1	15575	15575		24.519	0.99649	1	205220			31997	1429	26325	26350	35324	35324					0.13679689296850484
LLKTTVTPE	9	Unmodified	_LLKTTVTPE_					0	0	0		ENSG00000151704|ENST00000392666|KCNJ1;nc|ENSG00000151704|P48048-3|KCNJ1;nc|ENSG00000151704|P48048|KCNJ1	ENSG00000151704|ENST00000392666|KCNJ1	ENSG00000151704|ENST00000392666|KCNJ1	MULTI-MSMS	OvCa9_classI_Rep2	2	501.2967834472656	2	501.297507	1000.58046	-1.7009	-0.00085264	1.4294	0.00071655	-0.27147	-0.00013609	501.29808755011607	120.33	1.4803	120.16	119.84	121.32	-0.17137					84	29	5	0	0	0	0.13482	1	11634	11634		87.754	2.8388	1	488720			31998	5578	26326	26351	35325	35325					0.08019493900235375
LLKVFVVEAA	10	Unmodified	_LLKVFVVEAA_					0	0	0		ENSG00000169689|ENST00000392359|CENPX;ENST00000584514.5_1_17:79977083-79980595:-|nuORF;ENST00000577379.5_1_17:79977117-79980595:-|nuORF	ENSG00000169689|ENST00000392359|CENPX	ENSG00000169689|ENST00000392359|CENPX	MULTI-MSMS	OvCa99_classI_Rep5	1	544.8410034179688	2	544.839342	1087.66413	1.7662	0.00096229	0.45792	0.00024949	2.2241	0.0012118	544.8394238194511	120.11	0.47868	120.11	119.88	120.36	0					26	11	3	0	0	0	0.31157	1	13783	13783		79.451	0	1	1036400			31999	7032	26327	26352	35326	35326					0.12380650067939314
LLKVGSKT	8	Unmodified	_LLKVGSKT_					0	0	0		ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	ENSG00000125484|ENST00000372146|GTF3C4	MULTI-MSMS	OvCa9_classI_Rep2	2	423.27484130859375	2	423.276378	844.538203	-1.0746	-0.00045487	-1.9263	-0.00081535	-3.0009	-0.0012702	423.27545611036373	140.26	1.6211	140.03	139.45	141.07	-0.22696					84	32	4	0	0	0	0.75661	1	14014	14014		19.36	2.8868	1	166850			32000	3712	26328	26353	35327	35327					0.10971563282521402
LLKVLHLRG	9	Unmodified	_LLKVLHLRG_					0	0	0		nc|ENSG00000226266|Q9UIF8-4|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;ENSG00000123636|ENST00000392783|BAZ2B;nc|ENSG00000226266|Q9UIF8-2|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.8057861328125	2	524.853119	1047.69168	-1.3192	-0.0006924	3.0331	0.001592	1.7139	0.00089956	524.8548383860314	93.178	0.34994	90.671	90.563	90.913	-2.5072					10	6	2	0	0	0	0.027462	1	8124	8124		12.207	0	1	17671			32001	3610	26329	26354	35328	35328					0.16974598118849826
LLKVQALRKTI	11	Unmodified	_LLKVQALRKTI_					0	0	0			REV__nc|ENSG00000127463|Q8N766-4|EMC1	REV__nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	641.867431640625	2	641.932097	1281.84964	0.63105	0.00040509	-3.1007	-0.0019904	-2.4697	-0.0015854	641.9295268266732	162.43	0.14969	162.43	162.33	162.48	0					4	2	2	0	0	0	0.025638	1	19050	19050		23.523	0	1	12696	+		32002	18815	26330	26355	35329	35329					0.21999052587398182
LLKVVTAAKE	10	Unmodified	_LLKVVTAAKE_					0	0	0		nc|ENSG00000214960|A4D126-2|CRPPA;ENSG00000214960|ENST00000407010|CRPPA	nc|ENSG00000214960|A4D126-2|CRPPA	nc|ENSG00000214960|A4D126-2|CRPPA	MULTI-MSMS	OvCa9_classI_Rep2	2	536.3408203125	2	536.342249	1070.66995	-1.7182	-0.00092153	-0.87308	-0.00046827	-2.5913	-0.0013898	536.341630118672	49.028	1.1881	46.267	45.829	47.017	-2.7603					49	23	3	0	0	0	0.762	1	3077	3077		23.523	2.5758	1	119790			32003	9194	26331	26356	35330	35330					0.1374374857962266
LLKYLLLY	8	Unmodified	_LLKYLLLY_					0	0	0		ENST00000545279.5_1_5:135468581-135489282:+|nuORF;ENST00000509297.5_1_5:135469533-135483594:+|nuORF	ENST00000545279.5_1_5:135468581-135489282:+|nuORF	ENST00000545279.5_1_5:135468581-135489282:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.8206176757812	2	519.833529	1037.6525	0.87048	0.0004525	0.51487	0.00026765	1.3854	0.00072015	519.8350540838171	131.6	0.39197	131.37	131.2	131.59	-0.22696					9	7	2	0	0	0	0.028476	1	12987	12987		33.516	3.674	1	75687			32004	12959	26332	26357	35331	35331					0.13518453044616763
LLLAGFHPLV	10	Unmodified	_LLLAGFHPLV_					0	0	0		ENST00000598802.1_1_19:50545003-50545258:+|nuORF	ENST00000598802.1_1_19:50545003-50545258:+|nuORF	ENST00000598802.1_1_19:50545003-50545258:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3336791992188	2	540.334227	1078.6539	0.71527	0.00038649	-0.87238	-0.00047138	-0.15711	-8.4892E-05	540.3335173912039	131.44	2.5576	130.32	129.91	132.47	-1.1249					119	51	4	0	0	0	0.5794	1	10523	10523		44.531	6.7195	1	239410			32005	14200	26333	26358	35332	35332					0.1177208713336313
LLLALAGRLE	10	Unmodified	_LLLALAGRLE_					0	0	0			REV__ENSG00000169231|ENST00000368378|THBS3	REV__ENSG00000169231|ENST00000368378|THBS3	MULTI-MSMS	OvCa9_classI_Rep2	2	534.8421630859375	2	534.842416	1067.67028	-0.96609	-0.00051671	0.30499	0.00016312	-0.6611	-0.00035358	534.8424946462751	106.73	1.1824	106.43	106.13	107.31	-0.30836					51	23	3	0	0	0	0.42962	1	9949	9949		64.207	11.271	1	105470	+		32006	21447	26334	26359	35333	35333					0.1391516829946795
LLLALGWLL	9	Unmodified	_LLLALGWLL_					0	0	0		ENSG00000187492|ENST00000412678|CDHR4	ENSG00000187492|ENST00000412678|CDHR4	ENSG00000187492|ENST00000412678|CDHR4	MULTI-MSMS	OvCa9_classI_Rep2	2	506.3303527832031	2	506.333696	1010.65284	-0.49607	-0.00025117	-3.7021	-0.0018745	-4.1982	-0.0021257	506.331740533061	135.27	1.2754	135.05	134.74	136.01	-0.22697					65	25	4	0	0	0	0.42921	1	13416	13416		49.211	0	1	139920			32007	8403	26335	26360	35334	35334					0.14793872764460048
LLLALLAPR	9	Unmodified	_LLLALLAPR_					0	0	0		ENST00000238497.9_1_18:61078801-61089566:-|nuORF	ENST00000238497.9_1_18:61078801-61089566:-|nuORF	ENST00000238497.9_1_18:61078801-61089566:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	490.33599853515625	2	490.33677	978.658987	0.31976	0.00015679	-1.1553	-0.00056648	-0.83553	-0.00040969	490.3362879264998	135.18	3.9777	134.96	134.64	138.62	-0.22697					225	81	5	0	0	0	0.34808	2	13395	13395;13485		57.453	4.292	1	7114000			32008	9750	26336	26361	35335;35336	35335					0.16880390995981998
LLLALLAPR	9	Unmodified	_LLLALLAPR_					0	0	0		ENST00000238497.9_1_18:61078801-61089566:-|nuORF	ENST00000238497.9_1_18:61078801-61089566:-|nuORF	ENST00000238497.9_1_18:61078801-61089566:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	490.3362121582031	2	490.33677	978.658987	-1.5535	-0.00076172	0.74111	0.00036339	-0.81236	-0.00039833	490.33716888209767	136.71	4.5569	135.62	135.22	139.77	-1.0858					270	92	5	0	0	0	0.34808	1	11120	11120		57.453	1.9484	1	5555400			32009	9750	26336	26361	35337	35337					0.16880390995981998
LLLALLAPR	9	Unmodified	_LLLALLAPR_					0	0	0		ENST00000238497.9_1_18:61078801-61089566:-|nuORF	ENST00000238497.9_1_18:61078801-61089566:-|nuORF	ENST00000238497.9_1_18:61078801-61089566:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.33685302734375	2	490.33677	978.658987	2.3125	0.0011339	-3.376	-0.0016554	-1.0635	-0.00052147	490.335203673426	137.13	5.8682	135.59	135.18	141.05	-1.5437					314	118	5	0	0	0	0.34808	1	13335	13335		57.453	1.9484	1	8417000			32010	9750	26336	26361	35338	35338					0.16880390995981998
LLLALSPLR	9	Unmodified	_LLLALSPLR_					0	0	0			REV__ECT2|p.V603L|1|0.05|ENSG00000114346|chr3:172784785-172784785|G/C|missense_variant	REV__ECT2|p.V603L|1|0.05|ENSG00000114346|chr3:172784785-172784785|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3340759277344	2	498.334227	994.653902	-0.6989	-0.00034829	0.47295	0.00023569	-0.22596	-0.0001126	498.33435878229506	133.81	2.0717	132.69	132.27	134.34	-1.1226					102	41	4	0	0	0	0.39645	1	10805	10805		52.299	2.8576	1	981140	+		32011	16345	26337	26362	35339	35339					0.15636087133373167
LLLANSPLLR	10	Unmodified	_LLLANSPLLR_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-MSMS	OvCa9_classI_Rep2	2	555.3538818359375	2	555.355691	1108.69683	-4.1933	-0.0023288	0.44804	0.00024882	-3.7453	-0.00208	555.3557970844861	158.57	1.1439	158.34	158.06	159.2	-0.22696					59	23	4	0	0	0	0.81289	1	16140	16140		17.365	2.5001	1	239990	+		32012	28919	26338	26363	35340	35340					0.14682857190791765
LLLARMEL	8	Oxidation (M)	_LLLARM(Oxidation (M))EL_		LLLARM(1)EL		LLLARM(58)EL	0	0	1			REV__tr|A0A553SGG0|A0A553SGG0_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_10750PE=4SV=1	REV__tr|A0A553SGG0|A0A553SGG0_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_10750PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	487.78704833984375	2	487.788795	973.563038	-0.85886	-0.00041894	-3.7042	-0.0018069	-4.5631	-0.0022258	487.78731067257536	102	1.8287	101.24	100.67	102.5	-0.76401					100	36	5	0	0	0	0.62934	1	9385	9385		57.811	9.8957	1	589210	+		32013	29696	26339	26364	35341	35341		652			0.07519875093601058
LLLARNYIL	9	Unmodified	_LLLARNYIL_					0	0	0		ENSG00000177468|ENST00000367734|OLIG3;ENSG00000184221|ENST00000382348|OLIG1;ENSG00000205927|ENST00000382357|OLIG2	ENSG00000177468|ENST00000367734|OLIG3	ENSG00000177468|ENST00000367734|OLIG3	MULTI-MSMS	OvCa99_classI_Rep5	1	544.846435546875	2	544.844959	1087.67537	2.2231	0.0012113	-0.25976	-0.00014153	1.9633	0.0010697	544.8447449561304	115.56	1.3856	115.56	115.16	116.55	0					95	29	5	0	0	0	0.085069	1	13240	13240		101.21	0	1	2188400			32014	7685	26340	26365	35342	35342					0.1350347216209684
LLLAVVTNKL	10	Unmodified	_LLLAVVTNKL_					0	0	0		tr|A0A553SMI0|A0A553SMI0_NIACIAbrBfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22490PE=4SV=1	tr|A0A553SMI0|A0A553SMI0_NIACIAbrBfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22490PE=4SV=1	tr|A0A553SMI0|A0A553SMI0_NIACIAbrBfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22490PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	542.3622436523438	2	542.360442	1082.70633	1.6867	0.00091478	0.45732	0.00024803	2.144	0.0011628	542.3605704831067	135.57	2.7587	135.57	135.17	137.93	0					119	58	4	0	0	0	0.37436	1	15926	15926		71.877	3.0906	1	2035700			32015	33836	26341	26366	35343	35343					0.16828625476341585
LLLAYQVDI	9	Unmodified	_LLLAYQVDI_					0	0	0		tr|A0A553SQI7|A0A553SQI7_NIACIN-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07760PE=4SV=1	tr|A0A553SQI7|A0A553SQI7_NIACIN-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07760PE=4SV=1	tr|A0A553SQI7|A0A553SQI7_NIACIN-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07760PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.290771484375	2	524.307875	1046.6012	-0.81308	-0.0004263	-2.2035	-0.0011553	-3.0166	-0.0015816	524.3067559368468	55.185	0.75928	55.185	54.761	55.52	0					35	17	3	0	0	0	0.027455	1	4501	4501		42.396	13.247	1	612260			32016	34165	26342	26367	35344	35344					0.07976084279880524
LLLCKQKE	8	Unmodified	_LLLCKQKE_					0	0	0		ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295	ENSG00000166004|ENST00000325212|CEP295	ENSG00000166004|ENST00000325212|CEP295	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.80926513671875	2	487.788795	973.563038	-0.15045	-7.3389E-05	0.048109	2.3467E-05	-0.10234	-4.9922E-05	487.7905150591054	130.63	1.1249	129.51	129.17	130.29	-1.1249					26	22	2	0	0	0	0.028476	1	10357	10357		40.573	0	1	10083			32017	6628	26343	26368	35345	35345					0.0751987509358969
LLLCLPEED	9	Unmodified	_LLLCLPEED_					0	0	0		nc|ENSG00000214946|Q86UD7|TBC1D26;ENSG00000214946|ENST00000437605|TBC1D26	nc|ENSG00000214946|Q86UD7|TBC1D26	nc|ENSG00000214946|Q86UD7|TBC1D26	MULTI-MSMS	OvCa99_classI_Rep5	1	522.7686157226562	2	522.767726	1043.5209	0.69254	0.00036204	1.8549	0.0009697	2.5475	0.0013317	522.7685836509113	155.48	0.76801	155.48	155.12	155.89	0					35	14	3	0	0	0	0.58665	1	18206	18206		33.516	0	1	333210			32018	9192	26344	26369	35346	35346					0.0008785489453657647
LLLCRALLL	9	Unmodified	_LLLCRALLL_					0	0	0			REV__ENSG00000164690|ENST00000297261|SHH	REV__ENSG00000164690|ENST00000297261|SHH	MULTI-MSMS	OvCa99_classI_Rep5	1	514.3382568359375	2	514.338455	1026.66236	0.96716	0.00049745	-3.3028	-0.0016988	-2.3356	-0.0012013	514.3364556157534	150.45	0.59888	150.45	150.14	150.74	0					21	11	3	0	0	0	0.52083	1	17633	17633		40.573	3.4135	1	36304	+		32019	21012	26345	26370	35347	35347					0.15009317778344666
LLLDEVQSH	9	Unmodified	_LLLDEVQSH_					0	0	0		ENST00000426044.1_1_19:12305955-12345626:+|nuORF	ENST00000426044.1_1_19:12305955-12345626:+|nuORF	ENST00000426044.1_1_19:12305955-12345626:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	527.2818603515625	2	527.282389	1052.55022	-1.3393	-0.0007062	1.2007	0.00063313	-0.13859	-7.3075E-05	527.2829934474272	76.746	1.8025	74.375	73.877	75.679	-2.3715					81	34	5	0	0	0	0.12515	1	3981	3981		90.37	15.327	1	550880			32020	11731	26346	26371	35348	35348					0.026051352350577872
LLLDLKQGH	9	Unmodified	_LLLDLKQGH_					0	0	0		tr|A0A553SNB9|A0A553SNB9_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_24165PE=4SV=1	tr|A0A553SNB9|A0A553SNB9_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_24165PE=4SV=1	tr|A0A553SNB9|A0A553SNB9_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_24165PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	518.8121948242188	2	518.811116	1035.60768	0.18826	9.7672E-05	0.010984	5.6986E-06	0.19924	0.00010337	518.8108101830215	160.38	1.0517	160.38	159.91	160.96	0					37	20	3	0	0	0	0.36502	1	18802	18802		55.504	4.1688	1	195520			32021	33914	26347	26372	35349	35349					0.09130022231283874
LLLDLPIME	9	Unmodified	_LLLDLPIME_					0	0	0			REV__nc|ENSG00000005810|O75592-2|MYCBP2	REV__nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.8179321289062	2	528.804111	1055.59367	-0.28052	-0.00014834	3.2448	0.0017159	2.9643	0.0015675	528.8058685377075	114.82	1.1198	113.42	113.15	114.27	-1.3977					37	21	2	0	0	0	0.027462	1	10772	10772		30.504	1.3541	1	74353	+		32022	16403	26348	26373	35350	35350					0.06809608687990476
LLLDLPIME	9	Unmodified	_LLLDLPIME_					0	0	0			REV__nc|ENSG00000005810|O75592-2|MYCBP2	REV__nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	528.804111	1055.59367	-0.18206	-9.6274E-05	3.035	0.0016049	2.8529	0.0015086	528.8057981022102	113.71	1.2348	113.59	113.17	114.4	-0.11777	0.095446	-0.00037242	NaN	37.159	54	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43200	+		32023	16403	26348	26373							0.06809608687990476
LLLDLPIME	9	Unmodified	_LLLDLPIME_					0	0	0			REV__nc|ENSG00000005810|O75592-2|MYCBP2	REV__nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	528.804111	1055.59367	-0.25275	-0.00013365	3.626	0.0019174	3.3732	0.0017838	528.8059655247293	114.53	0.93928	113.47	113.15	114.09	-1.055	-0.022794	0.00025264	NaN	37.159	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70583	+		32024	16403	26348	26373							0.06809608687990476
LLLDMQNRL	9	Unmodified	_LLLDMQNRL_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000451943.6_1_11:61067610-61070297:-|nuORF;ENST00000538470.2_1_11:61067610-61070684:-|nuORF;nc|ENSG00000167986|Q16531-2|DDB1;ENST00000545894.1_1_11:61069637-61069871:-|nuORF	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	OvCa99_classI_Rep5	1	558.3126220703125	2	558.315709	1114.61686	3.0834	0.0017215	-1.8659	-0.0010418	1.2175	0.00067976	558.3146136584198	107.91	0.96671	107.91	107.31	108.28	0					34	22	2	0	0	0	0.059253	1	12175	12175		113.41	25.657	1	2300600			32025	6859	26349	26374	35351	35351					0.06414047525299793
LLLDTLRLGPS	11	Unmodified	_LLLDTLRLGPS_					0	0	0			REV__ENST00000511412.1_1_17:79847713-79848864:-|nuORF	REV__ENST00000511412.1_1_17:79847713-79848864:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	599.365966796875	2	599.363713	1196.71287	1.8059	0.0010824	-0.055675	-3.3369E-05	1.7502	0.001049	599.3637444670476	126.98	1.954	126.98	126.61	128.56	0					125	42	5	0	0	0	0.36705	1	14744	14744		63.534	3.3669	1	8769800	+		32026	26960	26350	26375	35352	35352					0.12238518637036577
LLLEAVKYHG	10	Unmodified	_LLLEAVKYHG_					0	0	0			REV__ENST00000504022.1_1_5:74434805-74464953:-|nuORF	REV__ENST00000504022.1_1_5:74434805-74464953:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.3214111328125	2	571.832049	1141.64954	-0.059093	-3.3792E-05	-4.0215	-0.0022996	-4.0806	-0.0023334	571.829735182503	57.073	1.1146	57.073	56.744	57.859	0					65	25	6	0	0	0	0.026871	1	4842	4842		29.15	0	1	8209600	+		32027	19976	26351	26376	35353	35353					0.08438577919810086
LLLEGSELN	9	Unmodified	_LLLEGSELN_					0	0	0		tr|A0A553SJP2|A0A553SJP2_NIACIisochorismatesynthaseOS=NialliacirculansOX=1397GN=CEQ21_17290PE=3SV=1	tr|A0A553SJP2|A0A553SJP2_NIACIisochorismatesynthaseOS=NialliacirculansOX=1397GN=CEQ21_17290PE=3SV=1	tr|A0A553SJP2|A0A553SJP2_NIACIisochorismatesynthaseOS=NialliacirculansOX=1397GN=CEQ21_17290PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.7608642578125	2	494.27149	986.528426	3.5334	0.0017464	4.2013	0.0020766	7.7347	0.003823	494.27204216318097	133.8	0.24458	132.28	132.14	132.39	-1.5257					5	4	2	0	0	0	0.027462	1	12906	12906		38.806	9.6566	1	4173.6			32028	33524	26352	26377	35354	35354					0.03462330486479459
LLLEILHEI	9	Unmodified	_LLLEILHEI_					0	0	0		ENSG00000197930|ENST00000395686|ERO1A;ENST00000556039.5_1_14:53110276-53130527:-|nuORF;ENST00000554019.5_1_14:53110290-53130527:-|nuORF	ENSG00000197930|ENST00000395686|ERO1A	ENSG00000197930|ENST00000395686|ERO1A	MULTI-MSMS	OvCa99_classI_Rep5	1	546.8373413085938	2	546.8368	1091.65905	1.43	0.000782	0.10106	5.5263E-05	1.5311	0.00083726	546.8366941697536	148.22	1.8591	148.22	147.84	149.7	0					69	37	2	0	0	0	0.031958	2	17331	17331;17353		133.81	51.354	1	389160			32029	8763	26353	26378	35355;35356	35355					0.11688346205323796
LLLEKKPLPT	10	Unmodified	_LLLEKKPLPT_					0	0	0			REV__ENSG00000090339|ENST00000264832|ICAM1	REV__ENSG00000090339|ENST00000264832|ICAM1	MULTI-MSMS	OvCa9_classI_Rep2	2	576.3719482421875	2	576.373549	1150.73255	-1.827	-0.001053	-0.73389	-0.000423	-2.5608	-0.001476	576.3730150957791	53.322	1.3909	50.508	50.182	51.573	-2.8139					65	27	4	0	0	0	0.79213	1	3606	3606		19.997	0	1	195240	+		32030	17220	26354	26379	35357	35357					0.1632089464778801
LLLENVVHH	9	Unmodified	_LLLENVVHH_					0	0	0		nc|ENSG00000176095|Q92551-2|IP6K1;ENSG00000176095|ENST00000321599|IP6K1	nc|ENSG00000176095|Q92551-2|IP6K1	nc|ENSG00000176095|Q92551-2|IP6K1	MULTI-MSMS	OvCa99_classI_Rep5	1	537.30908203125	2	537.308741	1072.60293	0.60065	0.00032274	0.42156	0.00022651	1.0222	0.00054924	537.3088532268252	160.46	0.9505	160.46	160.16	161.11	0					40	18	3	0	0	0	0.27001	1	18829	18829		66.429	6.1353	1	334390			32031	7582	26355	26380	35358	35358					0.06953138088510968
LLLEPLAS	8	Unmodified	_LLLEPLAS_					0	0	0			REV__ENST00000493538.5_1_2:25799677-25799803:-|nuORF	REV__ENST00000493538.5_1_2:25799677-25799803:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	428.2615051269531	2	428.262936	854.51132	-2.5111	-0.0010754	-0.44999	-0.00019271	-2.9611	-0.0012681	428.26264584865925	144.43	1.5889	143.46	143.1	144.69	-0.97301					79	31	4	0	0	0	0.75915	1	12042	12042		20.482	0	1	839380	+		32032	26708	26356	26381	35359	35359					0.07824454671322201
LLLEPRAVAK	10	Unmodified	_LLLEPRAVAK_					0	0	0			REV__nc|ENSG00000095370|Q8N5H7-4|SH2D3C	REV__nc|ENSG00000095370|Q8N5H7-4|SH2D3C	MULTI-SECPEP	OvCa9_classI_Rep3	3	555.3253173828125	2	555.355691	1108.69683	-1.5118	-0.00083959	1.0182	0.00056546	-0.49361	-0.00027413	555.3560703090947	85.372	0.84705	83.151	82.888	83.735	-2.2204					37	16	3	0	0	0	0.026714	1	5000	5000		28.081	6.3957	1	88521	+		32033	28760	26357	26382	35360	35360					0.14682857190791765
LLLERPTDD	9	Unmodified	_LLLERPTDD_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.3077392578125	2	536.287671	1070.56079	1.8619	0.00099849	-1.1345	-0.00060843	0.72734	0.00039006	536.2867026018581	108.76	0.78195	108.76	108.32	109.11	0					25	17	2	0	0	0	0.027455	1	12251	12251		19.997	0	1	184220			32034	6318	26358	26383	35361	35361					0.028331178894632103
LLLERTYDP	9	Unmodified	_LLLERTYDP_					0	0	0			REV__ENSG00000129925|ENST00000431232|PGAP6	REV__ENSG00000129925|ENST00000431232|PGAP6	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.2827758789062	2	560.305864	1118.59717	1.3948	0.00078154	3.402	0.0019062	4.7968	0.0026877	560.3082776272496	153.06	0.95436	153.06	152.64	153.6	0					22	19	2	0	0	0	0.027462	1	17955	17955		25.574	6.4705	1	41048	+		32035	18912	26359	26384	35362	35362					0.04261994786179457
LLLESKLEQLL	11	Unmodified	_LLLESKLEQLL_					0	0	0		ENSG00000182261|ENST00000691676|NLRP10	ENSG00000182261|ENST00000691676|NLRP10	ENSG00000182261|ENST00000691676|NLRP10	MULTI-MSMS	OvCa9_classI_Rep4_	4	433.60028076171875	3	433.602511	1297.7857	-5.7773	-0.002505	2.6433	0.0011461	-3.134	-0.0013589	433.6035901203489	162.04	0.72089	160.41	160.05	160.77	-1.6239					30	17	2	0	0	0	0.72507	1	16010	16010		14.694	0.60766	1	23959			32036	7987	26360	26385	35363	35363					0.14872227639807534
LLLESKLEQLL	11	Unmodified	_LLLESKLEQLL_					0	0	0		ENSG00000182261|ENST00000691676|NLRP10	ENSG00000182261|ENST00000691676|NLRP10	ENSG00000182261|ENST00000691676|NLRP10	MULTI-MATCH	OvCa9_classI_Rep2	2		3	433.602511	1297.7857	-4.9092	-0.0021286	1.8626	0.00080763	-3.0466	-0.001321	433.60321647701875	160.84	0.66035	160.61	160.33	160.99	-0.22696	0.10018	-0.00074506	NaN	14.694	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11191			32037	7987	26360	26385							0.14872227639807534
LLLEYIILV	9	Unmodified	_LLLEYIILV_					0	0	0			REV__ENSG00000203730|ENST00000367565|TEDDM1	REV__ENSG00000203730|ENST00000367565|TEDDM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.2955322265625	2	544.851919	1087.68928	2.3489	0.0012798	-2.7497	-0.0014982	-0.40087	-0.00021841	544.8501641472154	113.34	0.34017	113.34	113.11	113.45	0					11	7	2	0	0	0	0.027462	1	12910	12910		35.201	1.0282	1	71577	+		32038	23111	26361	26386	35364	35364					0.14894704870516762
LLLEYLPVP	9	Unmodified	_LLLEYLPVP_					0	0	0			REV__tr|A0A553STB9|A0A553STB9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04775PE=4SV=1	REV__tr|A0A553STB9|A0A553STB9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04775PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3189086914062	2	528.820618	1055.62668	1.7925	0.00094789	0.32505	0.00017189	2.1175	0.0011198	528.8205778845442	128.48	0.32823	128.48	128.32	128.65	0					11	6	2	0	0	0	0.027462	1	14880	14880		44.531	11.719	1	536780	+		32039	30947	26362	26387	35365	35365					0.10109558802332685
LLLFAEILTR	10	Unmodified	_LLLFAEILTR_					0	0	0		nc|ENSG00000167077|Q5TIA1-4|MEI1;MEI1|p.D538Efs*33|1|0.08|ENSG00000167077|chr22:41745959-41745960|-/ATACCGTTGCCTTACCATGAACCTGCTTTTGT|frameshift_variant;ENSG00000167077|ENST00000401548|MEI1;nc|ENSG00000167077|Q5TIA1-6|MEI1	nc|ENSG00000167077|Q5TIA1-4|MEI1	nc|ENSG00000167077|Q5TIA1-4|MEI1	MULTI-SECPEP	OvCa9_classI_Rep3	3	594.8528442382812	2	594.871174	1187.72779	-0.31276	-0.00018605	-1.6273	-0.00096806	-1.9401	-0.0011541	594.8703251449336	77.885	0.64798	75.533	75.202	75.85	-2.3527					16	12	2	0	0	0	0.026939	1	4080	4080		24.203	0	1	35264			32040	6749	26363	26388	35366	35366					0.14144010505015103
LLLFAHDMVQ	10	Unmodified	_LLLFAHDMVQ_					0	0	0			REV__ENSG00000163810|ENST00000296125|TGM4	REV__ENSG00000163810|ENST00000296125|TGM4	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.8390502929688	2	593.818084	1185.62162	2.2077	0.0013109	2.0174	0.0011979	4.225	0.0025089	593.8193748787112	102.19	0.25609	102.19	102.08	102.34	0					8	5	2	0	0	0	0.026752	1	11374	11374		35.618	11.416	1	169960	+		32041	20893	26364	26389	35367	35367					0.03622931668064666
LLLFFFLK	8	Unmodified	_LLLFFFLK_					0	0	0			REV__ENST00000508262.2_2_4:86938383-87019884:-|nuORF	REV__ENST00000508262.2_2_4:86938383-87019884:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.283447265625	2	520.830789	1039.64703	-1.0778	-0.00056138	3.1665	0.0016492	2.0887	0.0010878	520.8327896738105	70.786	0.81718	67.329	66.959	67.776	-3.4563					36	16	3	0	0	0	0.028476	1	5365	5365		37.028	0	1	92425	+		32042	26910	26365	26390	35368	35368					0.12878774252794756
LLLFFFLK	8	Unmodified	_LLLFFFLK_					0	0	0			REV__ENST00000508262.2_2_4:86938383-87019884:-|nuORF	REV__ENST00000508262.2_2_4:86938383-87019884:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	520.830789	1039.64703	0.67446	0.00035128	1.8445	0.00096065	2.5189	0.0013119	520.8315846005997	69.8	0.79321	67.081	66.706	67.5	-2.7196	-0.12444	-0.00050302	NaN	37.028	42	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	192340	+		32043	26910	26365	26390							0.12878774252794756
LLLFFLLY	8	Unmodified	_LLLFFLLY_					0	0	0		nc|ENSG00000240403|P43630-2|KIR3DL2;ENSG00000240403|ENST00000326321|KIR3DL2	nc|ENSG00000240403|P43630-2|KIR3DL2	nc|ENSG00000240403|P43630-2|KIR3DL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.2900390625	2	521.322797	1040.63104	0.48996	0.00025543	2.3857	0.0012437	2.8756	0.0014991	521.3242523300894	35.207	0.30103	32.358	32.19	32.491	-2.849					11	5	3	0	0	0	0.028476	1	1112	1112		16.705	0	1	18799			32044	9339	26366	26391	35369	35369					0.11235068015912475
LLLFHRGG	8	Unmodified	_LLLFHRGG_					0	0	0		ENST00000584581.5_1_18:72178181-72179738:+|nuORF	ENST00000584581.5_1_18:72178181-72179738:+|nuORF	ENST00000584581.5_1_18:72178181-72179738:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	456.77227783203125	2	456.774337	911.534121	-0.55209	-0.00025218	-4.0019	-0.0018279	-4.5539	-0.0020801	456.77237766888294	142.31	1.8774	142.08	141.37	143.25	-0.22697					97	37	4	0	0	0	0.74679	1	14258	14258		28.254	4.0515	1	225920			32045	14020	26367	26392	35370	35370					0.07481518579481872
LLLFIVPTPN	10	Unmodified	_LLLFIVPTPN_					0	0	0		nc|ENSG00000235818|Q8TDU5|VN1R17P	nc|ENSG00000235818|Q8TDU5|VN1R17P	nc|ENSG00000235818|Q8TDU5|VN1R17P	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.7875366210938	2	563.847167	1125.67978	0.44312	0.00024985	-1.1369	-0.00064105	-0.69381	-0.0003912	563.8468617638082	105.32	0.48447	105.32	105.04	105.53	0					26	10	3	0	0	0	0.026895	1	11837	11837		87.696	5.3914	1	589150			32046	15332	26368	26393	35371	35371					0.12196936584996365
LLLFLLLRV	9	Unmodified	_LLLFLLLRV_					0	0	0			REV__nc|ENSG00000164520|Q8TD07-4|RAET1E	REV__nc|ENSG00000164520|Q8TD07-4|RAET1E	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.3466796875	2	550.38372	1098.75289	1.9011	0.0010464	2.8283	0.0015567	4.7295	0.002603	550.3851344372162	87.22	0.70061	87.22	86.637	87.338	0					22	16	2	0	0	0	0.027462	1	9167	9167		13.775	0	1	281090	+		32047	20996	26369	26394	35372	35372					0.20746110098275494
LLLFLLVVR	9	Unmodified	_LLLFLLVVR_					0	0	0			REV__ENST00000374023.7_2_6:34555964-34556354:-|nuORF	REV__ENST00000374023.7_2_6:34555964-34556354:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.3260498046875	2	543.375895	1084.73724	-0.67471	-0.00036662	1.1266	0.00061219	0.45194	0.00024557	543.8761179351434	61.685	0.20285	61.685	61.501	61.704	0					7	4	2	0	0	0	0.027462	1	5452	5452		20.482	0	1	137310	+		32048	25055	26370	26395	35373	35373					0.1982582358120908
LLLFLSAGFV	10	Unmodified	_LLLFLSAGFV_					0	0	0			REV__RTN4-KIAA0196|2|fusion;REV__ENSG00000115310|ENST00000337526|RTN4	REV__ENSG00000115310|ENST00000337526|RTN4	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3305053710938	2	540.328611	1078.64267	-1.2676	-0.00068491	4.0333	0.0021793	2.7657	0.0014944	540.3307152267141	139.22	4.0818	138.16	137	141.08	-1.0595					200	82	3	0	0	0	0.74484	1	11497	11497		25.45	2.4077	1	55828	+		32049	18235;29346	26371	26396	35374	35374					0.1064926503922834
LLLFRHKL	8	Unmodified	_LLLFRHKL_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.8198852539062	2	520.342387	1038.67022	-0.039257	-2.0427E-05	4.0929	0.0021297	4.0537	0.0021093	520.3445502404965	132.76	0.68854	131.63	131.39	132.07	-1.1249					18	13	2	0	0	0	0.028476	1	10604	10604		19.36	0	1	20309	+		32050	19568	26372	26397	35375	35375					0.15243213090116114
LLLGALQGT	9	Unmodified	_LLLGALQGT_					0	0	0		CNPY2|p.L15Q|1|0.11|ENSG00000257727|chr12:56315174-56315174|A/T|missense_variant	CNPY2|p.L15Q|1|0.11|ENSG00000257727|chr12:56315174-56315174|A/T|missense_variant	CNPY2|p.L15Q|1|0.11|ENSG00000257727|chr12:56315174-56315174|A/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	443.27227783203125	2	443.273835	884.533118	-1.4905	-0.00066069	-1.4677	-0.00065059	-2.9582	-0.0013113	443.2730906196648	139.11	1.2789	138.05	137.68	138.96	-1.0595					59	25	3	0	0	0	0.69895	1	11433	11433		18.324	1.8513	1	174030			32051	590	26373	26398	35376	35376					0.08623259419914575
LLLGARVMA	9	Unmodified	_LLLGARVMA_					0	0	0			REV__ENST00000448927.1_1_21:45752592-45753258:+|nuORF	REV__ENST00000448927.1_1_21:45752592-45753258:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	472.2875671386719	2	472.291505	942.568457	-3.3722	-0.0015927	-4.4722	-0.0021122	-7.8444	-0.0037048	472.2892568382278	150.85	1.4757	150.62	150.22	151.7	-0.22697					85	29	4	0	0	0	0.64339	1	15311	15311		26.796	2.5934	1	396600	+		32052	25938	26374	26399	35377	35377					0.09487598676059861
LLLGARWSQ	9	Unmodified	_LLLGARWSQ_					0	0	0			REV__ENST00000489581.1_1_22:22326749-22330123:-|nuORF	REV__ENST00000489581.1_1_22:22326749-22330123:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.273193359375	2	522.303458	1042.59236	-0.7682	-0.00040123	3.5865	0.0018732	2.8183	0.001472	522.3051189815025	65.329	0.19582	65.329	65.19	65.385	0					5	4	2	0	0	0	0.027462	1	5986	5986		24.203	13.337	1	73553	+		32053	26642	26375	26400	35378	35378					0.07277155434076121
LLLGGAWAAL	10	Unmodified	_LLLGGAWAAL_					0	0	0		chr19:51000521-51001098|300|36.05|0.44|6.37|-|2|None,KLK8|1	chr19:51000521-51001098|300|36.05|0.44|6.37|-|2|None,KLK8|1	chr19:51000521-51001098|300|36.05|0.44|6.37|-|2|None,KLK8|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.8055114746094	2	492.797478	983.580402	-1.2001	-0.00059143	-3.0433	-0.0014997	-4.2435	-0.0020912	492.7958079807497	50.404	0.8302	47.262	46.922	47.753	-3.1416					26	15	2	0	0	0	0.026839	1	2948	2948		26.796	0	1	72138			32054	422	26376	26401	35379	35379					0.08795538690890226
LLLGKLSE	8	Unmodified	_LLLGKLSE_					0	0	0		tr|A0A553SNR3|A0A553SNR3_NIACIMurR/RpiRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_25050PE=4SV=1	tr|A0A553SNR3|A0A553SNR3_NIACIMurR/RpiRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_25050PE=4SV=1	tr|A0A553SNR3|A0A553SNR3_NIACIMurR/RpiRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_25050PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	436.7748718261719	2	436.776211	871.537869	-1.3218	-0.00057733	-1.7819	-0.0007783	-3.1037	-0.0013556	436.77534043072393	144.04	2.131	143.81	143.2	145.33	-0.22697					119	42	4	0	0	0	0.75915	1	14504	14504		20.482	0	1	537180			32055	33948	26377	26402	35380	35380					0.0969614356265538
LLLGLPRPLP	10	Unmodified	_LLLGLPRPLP_					0	0	0		nc|ENSG00000177398|Q5DID0-3|UMODL1;ENSG00000177398|ENST00000408910|UMODL1;nc|ENSG00000177398|Q5DID0-4|UMODL1;nc|ENSG00000177398|Q5DID0-2|UMODL1	nc|ENSG00000177398|Q5DID0-3|UMODL1	nc|ENSG00000177398|Q5DID0-3|UMODL1	MULTI-SECPEP	OvCa9_classI_Rep3	3	545.3162231445312	2	544.863152	1087.71175	-2.2941	-0.00125	2.0615	0.0011232	-0.23263	-0.00012675	544.8641085194113	140.77	0.98109	139.73	139.38	140.36	-1.0339					48	19	3	0	0	0	0.026939	1	11677	11677		31.955	11.473	1	67324			32056	7676	26378	26403	35381	35381					0.17140349058786342
LLLGLWPGFL	10	Unmodified	_LLLGLWPGFL_					0	0	0			REV__ENSG00000163900|ENST00000421852|TMEM41A	REV__ENSG00000163900|ENST00000421852|TMEM41A	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.298583984375	2	564.844428	1127.6743	1.8251	0.0010309	-4.0728	-0.0023005	-2.2477	-0.0012696	564.8419800360841	130.53	0.62219	130.53	130.29	130.91	0					24	12	3	0	0	0	0.027007	1	15135	15135		26.796	5.8492	1	154040	+		32057	20908	26379	26404	35382	35382					0.11557257793197095
LLLGLYLLVC	10	Unmodified	_LLLGLYLLVC_					0	0	0			REV__nc|ENSG00000184716|A6NH21-2|SERINC4	REV__nc|ENSG00000184716|A6NH21-2|SERINC4	MULTI-MSMS	OvCa9_classI_Rep3	3	560.3399047851562	2	560.345946	1118.67734	-7.144	-0.0040031	-2.9806	-0.0016702	-10.125	-0.0056733	560.3441648343594	161.4	2.0053	160.03	159.58	161.59	-1.3692					105	41	5	0	0	0	0.73286	1	14044	14044		26.796	2.5934	1	475740	+		32058	25934	26380	26405	35383	35383					0.12274764855669673
LLLGMKENQEL	11	Unmodified	_LLLGMKENQEL_					0	0	0		PIPOX|p.H255Qfs*13|1|0.17|ENSG00000179761|chr17:29054649-29054649|C/-|frameshift_variant;ENSG00000179761|ENST00000323372|PIPOX;ENST00000580241.5_1_17:27280417-27383320:+|nuORF;ENST00000583215.5_1_17:27338116-27383320:+|nuORF	PIPOX|p.H255Qfs*13|1|0.17|ENSG00000179761|chr17:29054649-29054649|C/-|frameshift_variant	PIPOX|p.H255Qfs*13|1|0.17|ENSG00000179761|chr17:29054649-29054649|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	644.3505249023438	2	644.352488	1286.69042	-6.1065	-0.0039348	1.9091	0.0012301	-4.1974	-0.0027046	644.3535517231257	156.22	1.1461	155.15	154.82	155.96	-1.073					70	25	4	0	0	0	0.71789	1	13452	13452		23.523	1.5628	1	162170			32059	7840	26381	26406	35384	35384					0.05854551177094436
LLLGPEIT	8	Unmodified	_LLLGPEIT_					0	0	0			REV__nc|ENSG00000079308|Q9HBL0-1|TNS1	REV__nc|ENSG00000079308|Q9HBL0-1|TNS1	MULTI-MSMS	OvCa9_classI_Rep2	2	428.261474609375	2	428.262936	854.51132	-2.1797	-0.00093349	-0.96416	-0.00041291	-3.1439	-0.0013464	428.2624599299376	144.02	1.6837	143.79	143.2	144.88	-0.22697					114	33	5	0	0	0	0.75991	1	14487	14487		21.702	0	1	330270	+		32060	17039	26382	26407	35385	35385					0.0782445467133357
LLLGPLLLLW	10	Unmodified	_LLLGPLLLLW_					0	0	0			REV__ENST00000321725.10_1_3:52549009-52550096:+|nuORF	REV__ENST00000321725.10_1_3:52549009-52550096:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	575.880615234375	2	575.883553	1149.75255	-0.33635	-0.0001937	-3.3539	-0.0019315	-3.6902	-0.0021251	575.8816146863785	130.37	1.3721	129.25	128.83	130.21	-1.1121					69	27	4	0	0	0	0.5794	1	10325	10325		44.531	9.3304	1	151570	+		32061	24452	26383	26408	35386	35386					0.18366690378434214
LLLGPLRTL	9	Unmodified	_LLLGPLRTL_					0	0	0		ENST00000405140.7_2_8:27468732-27468852:-|nuORF	ENST00000405140.7_2_8:27468732-27468852:-|nuORF	ENST00000405140.7_2_8:27468732-27468852:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3336486816406	2	498.334227	994.653902	0.2425	0.00012085	-0.5271	-0.00026267	-0.2846	-0.00014182	498.33387359588454	132.52	1.8753	132.29	131.93	133.81	-0.22696					110	37	5	0	0	0	0.27546	1	13135	13135		65.803	4.8312	1	948910			32062	11460	26384	26409	35387	35387					0.15636087133384535
LLLGRKFTG	9	Unmodified	_LLLGRKFTG_					0	0	0			REV__nc|ENSG00000176623|Q96DB5-3|RMDN1	REV__nc|ENSG00000176623|Q96DB5-3|RMDN1	MULTI-MSMS	OvCa9_classI_Rep2	2	502.8135681152344	2	502.816202	1003.61785	-4.451	-0.0022381	0.22723	0.00011425	-4.2238	-0.0021238	502.8162192928447	153.83	1.4178	153.6	153.28	154.7	-0.22696					88	30	4	0	0	0	0.52083	2	15639	15639;15699		40.573	3.4135	1	684970	+		32063	21959	26385	26410	35388;35389	35388					0.11618629956524273
LLLGRKFTG	9	Unmodified	_LLLGRKFTG_					0	0	0			REV__nc|ENSG00000176623|Q96DB5-3|RMDN1	REV__nc|ENSG00000176623|Q96DB5-3|RMDN1	MULTI-MSMS	OvCa9_classI_Rep3	3	502.8146057128906	2	502.816202	1003.61785	-5.7843	-0.0029085	1.4056	0.00070674	-4.3788	-0.0022017	502.8168335130942	153.97	1.772	152.96	152.62	154.39	-1.0076					110	37	4	0	0	0	0.52083	3	13209	13209;13233;13240		40.573	3.4135	1	860080	+		32064	21959	26385	26410	35390;35391;35392	35390					0.11618629956524273
LLLGRKFTG	9	Unmodified	_LLLGRKFTG_					0	0	0			REV__nc|ENSG00000176623|Q96DB5-3|RMDN1	REV__nc|ENSG00000176623|Q96DB5-3|RMDN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.8143005371094	2	502.816202	1003.61785	-4.7582	-0.0023925	0.34644	0.0001742	-4.4117	-0.0022183	502.8162748013114	154.42	1.5526	152.97	152.64	154.2	-1.4516					113	39	4	0	0	0	0.53957	1	15322	15322		38.806	7.2273	1	1254800	+		32065	21959	26385	26410	35393	35393					0.11618629956524273
LLLGRLEV	8	Unmodified	_LLLGRLEV_					0	0	0			REV__ENST00000490319.1_1_18:74692385-74697120:-|nuORF	REV__ENST00000490319.1_1_18:74692385-74697120:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	456.79766845703125	2	456.797478	911.580402	0.29232	0.00013353	-0.61394	-0.00028045	-0.32162	-0.00014691	456.7971214119819	103.69	3.5724	103.12	102.73	106.3	-0.57639					168	71	3	0	0	0	0.45246	2	9593	9593;9606		82.305	0	1	1420000	+		32066	26653	26386	26411	35394;35395	35394					0.12107538690884212
LLLGRLEV	8	Unmodified	_LLLGRLEV_					0	0	0			REV__ENST00000490319.1_1_18:74692385-74697120:-|nuORF	REV__ENST00000490319.1_1_18:74692385-74697120:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	456.7982482910156	2	456.797478	911.580402	0.40268	0.00018394	-0.77327	-0.00035323	-0.37058	-0.00016928	456.7970629432732	104.69	4.1681	103.25	102.81	106.98	-1.4342					186	80	4	0	0	0	0.42208	2	7319	7319;7382		85.359	0	1	1565700	+		32067	26653	26386	26411	35396;35397	35396					0.12107538690884212
LLLGRLEV	8	Unmodified	_LLLGRLEV_					0	0	0			REV__ENST00000490319.1_1_18:74692385-74697120:-|nuORF	REV__ENST00000490319.1_1_18:74692385-74697120:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.7972717285156	2	456.797478	911.580402	-0.19337	-8.8331E-05	-0.21738	-9.9301E-05	-0.41075	-0.00018763	456.7973138081142	105.4	4.1348	103.39	102.95	107.09	-2.0161					221	81	4	0	0	0	0.53531	1	9597	9597		73.975	0	1	1556700	+		32068	26653	26386	26411	35398	35398					0.12107538690884212
LLLGSIPVLI	10	Unmodified	_LLLGSIPVLI_					0	0	0			REV__tr|A0A553SPW6|A0A553SPW6_NIACILincomycineffluxMFStransporterLmr(B)OS=NialliacirculansOX=1397GN=lmr(B)PE=4SV=1	REV__tr|A0A553SPW6|A0A553SPW6_NIACILincomycineffluxMFStransporterLmr(B)OS=NialliacirculansOX=1397GN=lmr(B)PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	519.3514404296875	2	519.352086	1036.68962	0.30155	0.00015661	-0.55425	-0.00028785	-0.2527	-0.00013124	519.3516891643123	134.26	1.9111	134.04	133.66	135.57	-0.22696					104	38	4	0	0	0	0.35697	2	13275	13273;13275		73.975	5.49	1	404150	+		32069	30580	26387	26412	35399;35400	35400					0.1727412459038078
LLLGTPVGQNP	11	Unmodified	_LLLGTPVGQNP_					0	0	0		ENST00000416671.5_1_22:29137938-29138193:-|nuORF	ENST00000416671.5_1_22:29137938-29138193:-|nuORF	ENST00000416671.5_1_22:29137938-29138193:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.80517578125	2	554.821681	1107.62881	1.4487	0.00080376	0.10092	5.5992E-05	1.5496	0.00085975	554.821648363424	78.997	0.41026	78.997	78.791	79.202	0					19	9	3	0	0	0	0.025593	1	8052	8052		39.253	7.723	1	551190			32070	11610	26388	26413	35401	35401					0.07929987540137517
LLLGVSLGT	9	Unmodified	_LLLGVSLGT_					0	0	0			REV__ENST00000394275.6_1_15:91477270-91478348:+|nuORF	REV__ENST00000394275.6_1_15:91477270-91478348:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	436.77447509765625	2	436.776211	871.537869	-1.3218	-0.00057733	-1.7819	-0.0007783	-3.1037	-0.0013556	436.77534043072393	144.04	2.131	143.81	143.2	145.33	-0.22697					119	42	4	0	0	0	0.6653	1	14429	14429		24.203	4.8428	1	537180	+		32071	25295	26389	26414	35402	35402					0.09696143562666748
LLLHCSLI	8	Unmodified	_LLLHCSLI_					0	0	0		ENST00000446228.5_1_2:162758621-162834241:+|nuORF	ENST00000446228.5_1_2:162758621-162834241:+|nuORF	ENST00000446228.5_1_2:162758621-162834241:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	456.2873840332031	2	456.272781	910.531009	-1.333	-0.0006082	-3.6289	-0.0016558	-4.9619	-0.002264	456.2709522293763	93.105	0.6973	91.143	90.981	91.678	-1.9617					15	13	2	0	0	0	0.028476	1	6001	6001		54.765	0	1	27030			32072	11988	26390	26415	35403	35403					0.07216507410441864
LLLHCSLI	8	Unmodified	_LLLHCSLI_					0	0	0		ENST00000446228.5_1_2:162758621-162834241:+|nuORF	ENST00000446228.5_1_2:162758621-162834241:+|nuORF	ENST00000446228.5_1_2:162758621-162834241:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	456.272781	910.531009	1.6601	0.00075747	-9.4521	-0.0043127	-7.792	-0.0035553	456.26816864170246	92.323	0.73656	91.155	90.919	91.655	-1.168	0.0059993	-0.0039642	NaN	54.765	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17303			32073	11988	26390	26415							0.07216507410441864
LLLHIDFSD	9	Unmodified	_LLLHIDFSD_					0	0	0		sp|P69338|UL132_HCMVAEnvelopeglycoproteinUL132OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL132PE=3SV=1	sp|P69338|UL132_HCMVAEnvelopeglycoproteinUL132OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL132PE=3SV=1	sp|P69338|UL132_HCMVAEnvelopeglycoproteinUL132OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL132PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	535.8131103515625	2	536.787307	1071.56006	-0.18184	-9.7608E-05	-2.6302	-0.0014118	-2.812	-0.0015095	536.7857471681148	131.34	0.44504	131.11	131	131.45	-0.22696					13	8	2	0	0	0	0.027462	1	12973	12973		30.504	0	1	22594			32074	32908	26391	26416	35404	35404					0.02714323240434169
LLLHLYTF	8	Unmodified	_LLLHLYTF_					0	0	0			REV__ENST00000500268.6_1_4:10455867-10456122:-|nuORF	REV__ENST00000500268.6_1_4:10455867-10456122:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	509.7876892089844	2	510.299853	1018.58515	-1.0251	-0.00052312	-3.0745	-0.0015689	-4.0996	-0.002092	510.2975497187805	101.07	1.0466	99.467	99.294	100.34	-1.6053					32	19	4	0	0	0	0.028476	1	6871	6871		42.474	3.2216	1	538610	+		32075	26811	26392	26417	35405	35405					0.07660422833669145
LLLHQFAAARA	11	Unmodified	_LLLHQFAAARA_					0	0	0			REV__ENSG00000132382|ENST00000254718|MYBBP1A	REV__ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MSMS	OvCa9_classI_Rep3	3	605.8551635742188	2	605.85639	1209.69823	1.4544	0.00088118	-2.7004	-0.001636	-1.246	-0.00075487	605.8546440314993	133.02	1.7212	131.9	131.58	133.3	-1.1249					92	34	4	0	0	0	0.5466	2	10672	10666;10672		49.536	8.456	1	499230	+		32076	19073	26393	26418	35406;35407	35407					0.10176491279548827
LLLIGAPL	8	Unmodified	_LLLIGAPL_					0	0	0		nc|ENSG00000005844|P20701-3|ITGAL;ENSG00000005844|ENST00000356798|ITGAL;nc|ENSG00000005844|P20701-2|ITGAL	nc|ENSG00000005844|P20701-3|ITGAL	nc|ENSG00000005844|P20701-3|ITGAL	MULTI-MSMS	OvCa99_classI_Rep5	1	405.2781677246094	2	405.278389	808.542226	1.7928	0.00072657	-0.96277	-0.00039019	0.82999	0.00033638	405.27799811906704	161.03	2.9084	161.03	159.62	162.53	0					81	57	2	0	0	0	0.69862	1	18794	18794		43.626	0	1	75161			32077	861	26394	26419	35408	35408					0.1302965277621979
LLLIGWPTI	9	Unmodified	_LLLIGWPTI_					0	0	0			REV__tr|A0A553SSH1|A0A553SSH1_NIACICoppertransportproteinOS=NialliacirculansOX=1397GN=CEQ21_03130PE=4SV=1	REV__tr|A0A553SSH1|A0A553SSH1_NIACICoppertransportproteinOS=NialliacirculansOX=1397GN=CEQ21_03130PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	513.329833984375	2	513.323328	1024.6321	1.1851	0.00060836	2.3203	0.0011911	3.5055	0.0017994	513.8246530993847	67.449	2.102	64.562	64.137	66.239	-2.8873					146	41	6	0	0	0	0.6959	1	2960	2960		19.36	2.655	1	2025700	+		32078	30838	26395	26420	35409	35409					0.12077282384802857
LLLIKKRP	8	Unmodified	_LLLIKKRP_					0	0	0		tr|A0A7D6ZSK5|A0A7D6ZSK5_9CLOTDUF3788domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16185PE=4SV=1	tr|A0A7D6ZSK5|A0A7D6ZSK5_9CLOTDUF3788domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16185PE=4SV=1	tr|A0A7D6ZSK5|A0A7D6ZSK5_9CLOTDUF3788domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16185PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	490.336181640625	2	490.852587	979.690622	0.33575	0.0001648	-1.7714	-0.00086948	-1.4356	-0.00070467	490.8515474752697	135.48	0.24622	135.25	135.13	135.37	-0.22696					6	4	2	0	0	0	0.028476	1	13437	13437		21.702	0	1	17024			32079	35740	26396	26421	35410	35410					0.19996383749935376
LLLILTLLE	9	Unmodified	_LLLILTLLE_					0	0	0		nc|ENSG00000149516|Q96HJ5-3|MS4A3;nc|ENSG00000149516|Q96HJ5-2|MS4A3;ENSG00000149516|ENST00000278865|MS4A3	nc|ENSG00000149516|Q96HJ5-3|MS4A3	nc|ENSG00000149516|Q96HJ5-3|MS4A3	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.8772583007812	2	520.851919	1039.68928	3.1221	0.0016261	2.8095	0.0014633	5.9316	0.0030895	520.8527121606681	97.628	0.30112	97.628	97.479	97.78	0					9	6	2	0	0	0	0.027462	1	10732	10732		12.959	0	1	81290			32080	5465	26397	26422	35411	35411					0.1710270487053549
LLLIPKWL	8	Unmodified	_LLLIPKWL_					0	0	0		nc|ENSG00000162594|Q5VWK5-5|IL23R;nc|ENSG00000162594|Q5VWK5-6|IL23R;nc|ENSG00000162594|Q5VWK5-2|IL23R;ENSG00000162594|ENST00000347310|IL23R	nc|ENSG00000162594|Q5VWK5-5|IL23R	nc|ENSG00000162594|Q5VWK5-5|IL23R	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3337097167969	2	498.336239	994.657924	-0.6989	-0.00034829	-3.5632	-0.0017757	-4.2621	-0.002124	498.33435878229506	133.81	2.0717	132.69	132.27	134.34	-1.1226					102	41	4	0	0	0	0.49583	1	10799	10799		77.944	0	1	981140			32081	6199	26398	26423	35412	35412					0.16038176627080247
LLLISFILTYS	11	Unmodified	_LLLISFILTYS_					0	0	0			REV__ENST00000565488.5_1_1:108678414-108678705:-|nuORF	REV__ENST00000565488.5_1_1:108678414-108678705:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8817749023438	2	641.88649	1281.75843	-2.5182	-0.0016164	-4.0504	-0.0025999	-6.5686	-0.0042163	641.8839546837315	150.47	2.9704	149.03	147.78	150.75	-1.4344					235	64	4	0	0	0	0.72505	1	15026	15026		14.865	0	1	344900	+		32082	27685	26399	26424	35413	35413					0.12881744099445314
LLLITEII	8	Unmodified	_LLLITEII_					0	0	0		nc|ENSG00000120903|Q15822-2|CHRNA2;ENSG00000120903|ENST00000407991|CHRNA2;nc|ENSG00000101204|P43681-2|CHRNA4;ENSG00000101204|ENST00000370263|CHRNA4	nc|ENSG00000120903|Q15822-2|CHRNA2	nc|ENSG00000120903|Q15822-2|CHRNA2	MULTI-SECPEP	OvCa9_classI_Rep3	3	464.279296875	2	464.309887	926.60522	-1.1087	-0.00051477	3.4074	0.0015821	2.2988	0.0010673	464.3117133336173	83.489	0.37865	81.228	80.967	81.346	-2.261					12	7	2	0	0	0	0.028476	1	4763	4763		14.664	0	1	28307			32083	2150	26400	26425	35414	35414					0.13898173773611688
LLLIVLWNAY	10	Unmodified	_LLLIVLWNAY_					0	0	0			REV__nc|ENSG00000070985|Q9NZQ8-2|TRPM5	REV__nc|ENSG00000070985|Q9NZQ8-2|TRPM5	MULTI-SECPEP	OvCa99_classI_Rep5	1	609.3294067382812	2	609.368267	1216.72198	0.092837	5.6572E-05	3.5852	0.0021847	3.6781	0.0022413	609.371775010458	60.579	0.5815	60.579	60.277	60.859	0					19	13	2	0	0	0	0.026822	1	5321	5321		38.806	9.6566	1	208170	+		32084	16895	26401	26426	35415	35415					0.1222891199336118
LLLKEQHS	8	Unmodified	_LLLKEQHS_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OvCa99_classI_Rep5	1	484.28076171875	2	484.282192	966.549831	2.2503	0.0010898	0.21519	0.00010421	2.4655	0.001194	484.2821707480213	80.033	1.0339	80.033	79.625	80.659	0					59	24	3	0	0	0	0.10282	1	8192	8192		143.02	9.2067	1	795290	+		32085	16701	26402	26427	35416	35416					0.06521760305861335
LLLKEQHS	8	Unmodified	_LLLKEQHS_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	484.282192	966.549831	2.2503	0.0010898	0.21519	0.00010421	2.4655	0.001194	484.2821707480213	80.033	1.0339	80.033	79.625	80.659	0	0	0	NaN	143.02	59	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	795290	+		32086	16701	26402	26427							0.06521760305861335
LLLKFGRN	8	Unmodified	_LLLKFGRN_					0	0	0		ENSG00000178773|ENST00000319518|CPNE7;nc|ENSG00000178773|Q9UBL6|CPNE7	ENSG00000178773|ENST00000319518|CPNE7	ENSG00000178773|ENST00000319518|CPNE7	MULTI-MSMS	OvCa9_classI_Rep2	2	480.8005676269531	2	480.803094	959.591636	-3.5276	-0.0016961	-0.80978	-0.00038934	-4.3374	-0.0020854	480.80256125573777	150.83	1.6209	150.61	150.17	151.79	-0.22696					93	32	4	0	0	0	0.75991	1	15315	15315		21.702	1.2205	1	676150			32087	7774	26403	26428	35417	35417					0.11022360785045748
LLLKGDSFT	9	Unmodified	_LLLKGDSFT_					0	0	0			REV__tr|A0A7D6VM05|A0A7D6VM05_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_13450PE=4SV=1	REV__tr|A0A7D6VM05|A0A7D6VM05_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_13450PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	497.2842712402344	2	497.2844	992.554247	1.7752	0.0008828	-2.363	-0.0011751	-0.58777	-0.00029229	497.28311547037197	134.32	1.5876	134.32	134.06	135.64	0					65	34	4	0	0	0	0.091859	1	15645	15645		99.375	3.1845	1	1166200	+		32088	31121	26404	26429	35418	35418					0.057672247287769096
LLLKGDSFT	9	Unmodified	_LLLKGDSFT_					0	0	0			REV__tr|A0A7D6VM05|A0A7D6VM05_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_13450PE=4SV=1	REV__tr|A0A7D6VM05|A0A7D6VM05_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_13450PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	497.2844	992.554247	1.7752	0.0008828	-2.363	-0.0011751	-0.58777	-0.00029229	497.28311547037197	134.32	1.5876	134.32	134.06	135.64	0	0	0	NaN	99.375	65	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1166200	+		32089	31121	26404	26429							0.057672247287769096
LLLKILKVH	9	Unmodified	_LLLKILKVH_					0	0	0		tr|A0A7D6VTV0|A0A7D6VTV0_9CLOTIron-sulfurclusterrepairdi-ironproteinOS=ClostridiumintestinaleOX=36845GN=ricPE=4SV=1	tr|A0A7D6VTV0|A0A7D6VTV0_9CLOTIron-sulfurclusterrepairdi-ironproteinOS=ClostridiumintestinaleOX=36845GN=ricPE=4SV=1	tr|A0A7D6VTV0|A0A7D6VTV0_9CLOTIron-sulfurclusterrepairdi-ironproteinOS=ClostridiumintestinaleOX=36845GN=ricPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.8624877929688	2	538.881345	1075.74814	0.4914	0.00026481	3.4078	0.0018364	3.8992	0.0021012	538.8834233693985	133.57	0.69003	132.44	132.27	132.96	-1.1249					16	13	2	0	0	0	0.027462	1	10742	10742		13.775	0	1	19731			32090	35146	26405	26430	35419	35419					0.2132922595551463
LLLKLDFFIL	10	Unmodified	_LLLKLDFFIL_					0	0	0		ENST00000535170.5_1_7:99638839-99639052:+|nuORF	ENST00000535170.5_1_7:99638839-99639052:+|nuORF	ENST00000535170.5_1_7:99638839-99639052:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	616.9911499023438	2	617.894118	1233.77368	2.3624	0.0014597	-2.4764	-0.0015301	-0.11398	-7.0427E-05	617.892553938766	89.062	0.75381	89.062	88.803	89.556	0					41	18	3	0	0	0	0.026871	1	9515	9515		37.159	18.897	1	897390			32091	13369	26406	26431	35420	35420					0.16614655687271807
LLLKLLHVK	9	Unmodified	_LLLKLLHVK_					0	0	0			REV__nc|ENSG00000170085|Q8NDZ2|SIMC1	REV__nc|ENSG00000170085|Q8NDZ2|SIMC1	MULTI-SECPEP	OvCa9_classI_Rep2	2	538.8627319335938	2	538.881345	1075.74814	-0.209	-0.00011263	0.80618	0.00043444	0.59719	0.00032181	538.8817084814409	132.13	0.68277	131.91	131.54	132.23	-0.22696					28	13	3	0	0	0	0.027462	1	12999	12999		19.36	0	1	63149	+		32092	21513	26407	26432	35421	35421					0.2132922595551463
LLLKLNPSCQ	10	Unmodified	_LLLKLNPSCQ_					0	0	0			REV__ENST00000437682.6_2_8:39022337-39022657:+|nuORF	REV__ENST00000437682.6_2_8:39022337-39022657:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	564.8276977539062	2	564.825909	1127.63727	-0.78674	-0.00044437	4.376	0.0024717	3.5893	0.0020273	564.8281356979684	55.822	1.7837	53.018	52.731	54.515	-2.804					83	35	4	0	0	0	0.67931	1	3911	3911		32.812	0.85756	1	335610	+		32093	25798	26408	26433	35422	35422					0.07855218185113699
LLLKSLHK	8	Unmodified	_LLLKSLHK_					0	0	0			REV__ENSG00000145246|ENST00000273859|ATP10D	REV__ENSG00000145246|ENST00000273859|ATP10D	MULTI-MSMS	OvCa9_classI_Rep2	2	476.32073974609375	2	476.32112	950.627687	-0.03478	-1.6567E-05	-0.27228	-0.00012969	-0.30706	-0.00014626	476.32093576429344	108.77	1.7316	108.54	108.17	109.91	-0.22498					106	34	4	0	0	0	0.50674	1	10180	10180		76.847	0	1	1471400	+		32094	19957	26409	26434	35423	35423					0.15039817961894641
LLLKSYEL	8	Unmodified	_LLLKSYEL_					0	0	0			REV__ENST00000483107.5_1_22:21329983-21333988:+|nuORF	REV__ENST00000483107.5_1_22:21329983-21333988:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	489.7998962402344	2	489.797143	977.579734	0.35762	0.00017516	4.1576	0.0020364	4.5152	0.0022115	489.79900077673824	160.64	3.1469	160.64	159.38	162.53	0					149	62	3	0	0	0	0.73938	1	18894	18894		31.955	0	1	288360	+		32095	22384	26410	26435	35424	35424					0.09004699251181592
LLLKVVHIDS	10	Unmodified	_LLLKVVHIDS_					0	0	0		ENST00000487587.2_1_20:43603507-43603681:+|nuORF	ENST00000487587.2_1_20:43603507-43603681:+|nuORF	ENST00000487587.2_1_20:43603507-43603681:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	568.8535766601562	2	568.855524	1135.69649	-5.375	-0.0030576	2.0179	0.0011479	-3.3571	-0.0019097	568.8565433281535	160.72	1.3933	160.5	160.18	161.57	-0.22696					89	27	5	0	0	0	0.7759	1	16401	16401		21.96	1.013	1	747650			32096	12650	26411	26436	35425	35425					0.1340743747093711
LLLKVYYIRFS	11	Unmodified	_LLLKVYYIRFS_					0	0	0		ENST00000421852.5_1_3:185208969-185209221:-|nuORF	ENST00000421852.5_1_3:185208969-185209221:-|nuORF	ENST00000421852.5_1_3:185208969-185209221:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	472.2823486328125	3	472.286746	1413.83841	-6.0447	-0.0028549	-0.27842	-0.00013149	-6.3232	-0.0029863	472.28675973301637	159.08	3.3809	157.81	156.71	160.09	-1.267					177	72	4	0	0	0	0.72493	2	13685	13685;13722		16.53	5.5317	1	110830			32097	11688	26412	26437	35426;35427	35426					0.14804230493245996
LLLLAAKT	8	Unmodified	_LLLLAAKT_					0	0	0			REV__ENSG00000196497|ENST00000354464|IPO4	REV__ENSG00000196497|ENST00000354464|IPO4	MULTI-SECPEP	OvCa99_classI_Rep5	1	422.2322998046875	2	421.789121	841.56369	0.008765	3.697E-06	3.5749	0.0015078	3.5836	0.0015115	421.7905551572569	51.002	0.47128	51.002	50.819	51.291	0					17	10	2	0	0	0	0.028476	1	3925	3925		6.3127	3.3832	1	259350	+		32098	22836	26413	26438	35428	35428					0.1365703780494414
LLLLAAWTAR	10	Unmodified	_LLLLAAWTAR_					0	0	0		nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP;nc|ENSG00000142192|P05067-2|APP;ENST00000474136.5_1_21:27382178-27543016:-|nuORF	nc|ENSG00000142192|P05067-10|APP	nc|ENSG00000142192|P05067-10|APP	MULTI-MSMS	OvCa9_classI_Rep2	2	564.3500366210938	2	564.350409	1126.68626	0.392	0.00022123	-0.14978	-8.4528E-05	0.24222	0.0001367	564.350136987116	133.44	0.78981	133.22	132.97	133.76	-0.22697					36	15	4	0	0	0	0.81289	1	13207	13207		17.365	0.89182	1	72143			32099	4960	26414	26439	35429	35429					0.12798874536360927
LLLLAFLLP	9	Unmodified	_LLLLAFLLP_					0	0	0		ENST00000552252.1_1_14:25044469-25045450:-|nuORF;ENSG00000100448|ENST00000216336|CTSG	ENST00000552252.1_1_14:25044469-25045450:-|nuORF	ENST00000552252.1_1_14:25044469-25045450:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.8278503417969	2	506.843897	1011.67324	-0.4915	-0.00024911	0.69026	0.00034985	0.19876	0.00010074	506.844730318647	24.661	0.20239	24.661	24.586	24.788	0					5	3	2	0	0	0	0.027462	1	472	472		8.8223	0	1	5221.1			32100	2070	26415	26440	35430	35430					0.16787043424290005
LLLLAPRAL	9	Unmodified	_LLLLAPRAL_					0	0	0			REV__ENSG00000184232|ENST00000328965|OAF	REV__ENSG00000184232|ENST00000328965|OAF	MULTI-MSMS	OvCa9_classI_Rep3	3	490.3360900878906	2	490.33677	978.658987	-1.5535	-0.00076172	0.74111	0.00036339	-0.81236	-0.00039833	490.33716888209767	136.71	4.5569	135.62	135.22	139.77	-1.0858					270	92	5	0	0	0	0.50066	1	11214	11214		42.474	1.9018	1	5555400	+		32101	22416	26416	26441	35431	35431					0.16880390995981998
LLLLCAGAPSF	11	Unmodified	_LLLLCAGAPSF_					0	0	0			REV__ENSG00000158008|ENST00000374280|EXTL1	REV__ENSG00000158008|ENST00000374280|EXTL1	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.7819213867188	2	552.809728	1103.6049	-0.056651	-3.1317E-05	-0.74369	-0.00041112	-0.80034	-0.00044244	552.809385103125	116.28	0.34656	116.16	115.94	116.28	-0.11777					9	6	2	0	0	0	0.025416	1	11083	11083		51.335	8.861	1	12515	+		32102	20544	26417	26442	35432	35432					0.05724430782106538
LLLLEPGG	8	Unmodified	_LLLLEPGG_					0	0	0		ENST00000483330.1_1_7:43908587-43908701:-|nuORF	ENST00000483330.1_1_7:43908587-43908701:-|nuORF	ENST00000483330.1_1_7:43908587-43908701:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	406.2480773925781	2	406.249829	810.485105	-1.2292	-0.00049936	-1.8965	-0.00077046	-3.1257	-0.0012698	406.24894809520566	140.8	1.576	139.77	139.38	140.96	-1.0339					88	31	4	0	0	0	0.74816	1	11616	11616		15.636	0	1	902300			32103	12586	26418	26443	35433	35433					0.07228185499855044
LLLLESVSMQ	10	Unmodified	_LLLLESVSMQ_					0	0	0		nc|ENSG00000172159|A2A2Y4-4|FRMD3;nc|ENSG00000172159|A2A2Y4-3|FRMD3;nc|ENSG00000172159|A2A2Y4-2|FRMD3	nc|ENSG00000172159|A2A2Y4-4|FRMD3	nc|ENSG00000172159|A2A2Y4-4|FRMD3	MULTI-MSMS	OvCa9_classI_Rep2	2	566.8154296875	2	566.81775	1131.62095	-0.034625	-1.9626E-05	-3.3718	-0.0019112	-3.4064	-0.0019308	566.8158254764281	108.92	2.4235	108.69	108.32	110.75	-0.22498					109	48	5	0	0	0	0.59317	1	10266	10266		42.864	10.909	1	1117900			32104	15180	26419	26444	35434	35434					0.06040092228363392
LLLLEVENK	9	Unmodified	_LLLLEVENK_					0	0	0		ENST00000357065.8_2_10:43891987-43903218:-|nuORF	ENST00000357065.8_2_10:43891987-43903218:-|nuORF	ENST00000357065.8_2_10:43891987-43903218:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2890625	2	535.826432	1069.63831	1.5558	0.00083364	-0.098696	-5.2884E-05	1.4571	0.00078076	535.8264918019613	109.89	0.90201	109.89	109.64	110.54	0					27	19	2	0	0	0	0.027462	1	12524	12524		44.117	6.3053	1	172720			32105	10709	26420	26445	35435	35435					0.10627755825657914
LLLLGQPP	8	Unmodified	_LLLLGQPP_					0	0	0		LOXL4|p.V443Pfs*13|1|0.36|ENSG00000138131|chr10:98256881-98256882|-/AGTGCACCGG|frameshift_variant;ENSG00000138131|ENST00000260702|LOXL4	LOXL4|p.V443Pfs*13|1|0.36|ENSG00000138131|chr10:98256881-98256882|-/AGTGCACCGG|frameshift_variant	LOXL4|p.V443Pfs*13|1|0.36|ENSG00000138131|chr10:98256881-98256882|-/AGTGCACCGG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	425.7759704589844	2	425.773471	849.53239	-0.54738	-0.00023306	3.7264	0.0015866	3.179	0.0013535	425.7749745888364	69.607	2.0379	66.126	65.811	67.849	-3.4812					126	41	5	0	0	0	0.74595	1	5215	5215		14.664	0	1	3927600			32106	4661	26421	26446	35436	35436					0.10160464770854105
LLLLIMVL	8	Unmodified	_LLLLIMVL_					0	0	0		nc|ENSG00000154133|Q8WZ75-3|ROBO4	nc|ENSG00000154133|Q8WZ75-3|ROBO4	nc|ENSG00000154133|Q8WZ75-3|ROBO4	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.2781677246094	2	464.3192	926.623847	0.24702	0.0001147	3.6827	0.0017099	3.9297	0.0018246	464.32018307477375	82.762	0.41491	81.163	80.906	81.321	-1.5988					10	7	2	0	0	0	0.028476	1	7053	7053		16.705	0	1	12273			32107	15105	26422	26447	35437	35437					0.1576001214381222
LLLLISDGLDQ	11	Unmodified	_LLLLISDGLDQ_					0	0	0			REV__ENSG00000283439|ENST00000636696|SPEM3	REV__ENSG00000283439|ENST00000636696|SPEM3	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.19921875	3	400.567578	1198.6809	1.0025	0.00040158	0.46894	0.00018784	1.4715	0.00058943	400.56763723910825	55.43	1.0711	55.43	55.107	56.178	0					60	25	4	0	0	0	0.025995	1	4620	4620		8.7993	2.1397	1	933220	+		32108	23664	26423	26448	35438	35438					0.08951106163249278
LLLLKCARLFP	11	Unmodified	_LLLLKCARLFP_					0	0	0		nc|ENSG00000111199|Q9HBA0-6|TRPV4;nc|ENSG00000111199|Q9HBA0-2|TRPV4;nc|ENSG00000111199|Q9HBA0-4|TRPV4;nc|ENSG00000111199|Q9HBA0-5|TRPV4;nc|ENSG00000111199|Q9HBA0-3|TRPV4;ENSG00000111199|ENST00000261740|TRPV4	nc|ENSG00000111199|Q9HBA0-6|TRPV4	nc|ENSG00000111199|Q9HBA0-6|TRPV4	MULTI-SECPEP	OvCa99_classI_Rep5	1	430.6067199707031	3	429.605421	1285.79443	0.323	0.00013876	3.1151	0.0013382	3.4381	0.001477	429.60673835739266	20.848	0.39495	20.848	20.741	21.136	0					13	8	3	0	0	0	0.026224	1	70	70		30.569	28.934	1	48879			32109	2811	26424	26449	35439	35439					0.16296922795254432
LLLLLCLPS	9	Unmodified	_LLLLLCLPS_					0	0	0			REV__ENSG00000243364|ENST00000368409|EFNA4	REV__ENSG00000243364|ENST00000368409|EFNA4	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.74737548828125	2	492.811739	983.608925	-0.051073	-2.5169E-05	3.6231	0.0017855	3.572	0.0017603	492.8132084219275	64.853	0.28435	64.853	64.75	65.034	0					9	6	2	0	0	0	0.027462	1	5917	5917		25.45	0	1	194190	+		32110	23466	26425	26450	35440	35440					0.11646520275826333
LLLLLFALL	9	Unmodified	_LLLLLFALL_					0	0	0			REV__ENSG00000180440|ENST00000315190|SERTM1	REV__ENSG00000180440|ENST00000315190|SERTM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.7755737304688	2	514.859547	1027.70454	2.0792	0.0010705	-3.9027	-0.0020094	-1.8235	-0.00093885	514.8573861195786	91.76	1.0957	91.76	91.459	92.555	0					51	25	3	0	0	0	0.027462	1	9949	9949		8.8223	0	1	1130200	+		32111	22173	26426	26451	35441	35441					0.19179616458359305
LLLLLGSQ	8	Unmodified	_LLLLLGSQ_					0	0	0		ENSG00000101435|ENST00000376979|CST9L	ENSG00000101435|ENST00000376979|CST9L	ENSG00000101435|ENST00000376979|CST9L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	428.2868347167969	2	428.778754	855.542954	-0.8798	-0.00037724	1.895	0.00081255	1.0152	0.00043531	428.7792937664588	107.2	0.57768	105.32	105.01	105.59	-1.8785					18	10	2	0	0	0	0.028476	1	9750	9750		8.2313	4.2461	1	11512			32112	2175	26427	26452	35442	35442					0.10940447425286948
LLLLLKLVAW	10	Unmodified	_LLLLLKLVAW_					0	0	0			REV__ENSG00000108829|ENST00000225972|LRRC59	REV__ENSG00000108829|ENST00000225972|LRRC59	MULTI-SECPEP	OvCa9_classI_Rep3	3	591.3721923828125	2	591.404653	1180.79475	-0.53439	-0.00031604	1.3055	0.00077206	0.77108	0.00045602	591.4064297994163	72.704	0.54744	70.122	69.84	70.387	-2.5814					18	10	2	0	0	0	0.027334	1	3485	3485		11.511	0	1	16067	+		32113	17905	26428	26453	35443	35443					0.21158665786788333
LLLLLLELP	9	Unmodified	_LLLLLLELP_					0	0	0			REV__ENSG00000174136|ENST00000513185|RGMB	REV__ENSG00000174136|ENST00000513185|RGMB	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.8114624023438	2	518.854461	1035.69437	-0.0044529	-2.3104E-06	3.4212	0.0017751	3.4167	0.0017728	518.8559698924166	88.617	0.49124	86.486	86.163	86.654	-2.1309					11	9	2	0	0	0	0.027462	1	5374	5374		25.45	0	1	48790	+		32114	21812	26429	26454	35444	35444					0.1779500873312827
LLLLLLGPA	9	Unmodified	_LLLLLLGPA_					0	0	0		ENSG00000169174|ENST00000302118|PCSK9	ENSG00000169174|ENST00000302118|PCSK9	ENSG00000169174|ENST00000302118|PCSK9	MULTI-SECPEP	OvCa99_classI_Rep5	1	462.7442626953125	2	461.820421	921.62629	0.20804	9.6078E-05	-2.7412	-0.0012659	-2.5332	-0.0011699	461.819035405553	70.702	0.34959	70.702	70.565	70.915	0					11	8	2	0	0	0	0.027462	1	6775	6775		29.842	15.177	1	445850			32115	6982	26430	26455	35445	35445					0.16234183873120855
LLLLLLLRA	9	Unmodified	_LLLLLLLRA_					0	0	0		ENSG00000104805|ENST00000405315|NUCB1;NUCB1-FAM83E|1|fusion;NUCB1-BAX|2|fusion;NUCB1-BAX|1|fusion;NUCB1-BAX|3|fusion;ENST00000413911.1_1_2:191745560-191746172:-|nuORF	ENSG00000104805|ENST00000405315|NUCB1	ENSG00000104805|ENST00000405315|NUCB1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.3211059570312	2	519.375895	1036.73724	-1.7225	-0.00089462	-1.5305	-0.00079491	-3.253	-0.0016895	519.3759470046462	107.13	0.26357	105.25	105.07	105.33	-1.8785					6	4	2	0	0	0	0.027462	1	9770	9770		19.36	0	1	3990			32116	2393	26431	26456	35446	35446					0.22033823581227807
LLLLLLLWG	9	Unmodified	_LLLLLLLWG_					0	0	0		nc|ENSG00000083807|Q9Y2P5-2|SLC27A5;ENSG00000083807|ENST00000263093|SLC27A5	nc|ENSG00000083807|Q9Y2P5-2|SLC27A5	nc|ENSG00000083807|Q9Y2P5-2|SLC27A5	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.8306274414062	2	527.357171	1052.69979	1.8707	0.00098653	-3.5371	-0.0018653	-1.6664	-0.00087876	527.3550480155125	136.83	0.38332	136.83	136.63	137.01	0					10	7	2	0	0	0	0.027462	1	15972	15972		39.021	0.21535	1	24030			32117	1700	26432	26457	35447	35447					0.1755473231560245
LLLLLLWP	8	Unmodified	_LLLLLLWP_					0	0	0		ENSG00000112195|ENST00000483722|TREML2;nc|ENSG00000149451|Q9BZ11-2|ADAM33;ENSG00000149451|ENST00000356518|ADAM33	REV__ENST00000489098.1_1_1:159921578-159923948:-|nuORF;REV__tr|A0A553SUQ4|A0A553SUQ4_NIACIThiolreductantABCexportersubunitCydDOS=NialliacirculansOX=1397GN=cydDPE=4SV=1;ENSG00000112195|ENST00000483722|TREML2;nc|ENSG00000149451|Q9BZ11-2|ADAM33	nc|ENSG00000149451|Q9BZ11-2|ADAM33	MULTI-SECPEP	OvCa9_classI_Rep2	2	491.82281494140625	2	490.830789	979.647025	-0.74251	-0.00036445	-3.5841	-0.0017592	-4.3266	-0.0021236	490.82887474375383	68.103	1.0366	65.441	65.139	66.176	-2.661					28	20	2	0	0	0	0.028476	1	5358	5358		24.504	0	1	66252			32118	20770;31108;2884;5459	26433	26458	35448	35448					0.1563877425278406
LLLLLLYL	8	Unmodified	_LLLLLLYL_					0	0	0			REV__L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|268|3|anti-sense	REV__L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|268|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.2814025878906	2	487.338447	972.662341	0.44591	0.00021731	-1.5509	-0.00075582	-1.105	-0.00053851	487.33739854451187	96.856	0.34078	95.897	95.728	96.068	-0.95857					9	6	2	0	0	0	0.028476	1	8739	8739		5.0869	0	1	17627	+		32119	28601	26434	26459	35449	35449					0.17491641049969076
LLLLLPELV	9	Unmodified	_LLLLLPELV_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.8479919433594	2	511.846636	1021.67872	1.215	0.00062189	-2.7577	-0.0014115	-1.5427	-0.00078965	511.84514235689	85.522	2.0184	82.876	82.361	84.379	-2.6463					82	40	3	0	0	0	0.57242	1	7198	7198		35.201	8.4046	1	433590	+		32120	17095	26435	26460	35450	35450					0.1687472221609596
LLLLLSAPR	9	Unmodified	_LLLLLSAPR_					0	0	0			REV__ENST00000465856.5_1_6:26422331-26423690:+|nuORF	REV__ENST00000465856.5_1_6:26422331-26423690:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3330383300781	2	498.334227	994.653902	0.034655	1.727E-05	-0.51496	-0.00025662	-0.48031	-0.00023935	498.3339335091273	123.54	3.2541	123.31	122.99	126.25	-0.23193					175	65	5	0	0	0	0.58665	1	12107	12107		33.516	1.5607	1	3004600	+		32121	15715	26436	26461	35451	35451					0.15636087133373167
LLLLLSAPR	9	Unmodified	_LLLLLSAPR_					0	0	0			REV__ENST00000465856.5_1_6:26422331-26423690:+|nuORF	REV__ENST00000465856.5_1_6:26422331-26423690:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3338317871094	2	498.334227	994.653902	0.2425	0.00012085	-0.5271	-0.00026267	-0.2846	-0.00014182	498.33387359588454	132.52	1.8753	132.29	131.93	133.81	-0.22696					110	37	5	0	0	0	0.33652	1	13152	13152		58.782	3.2778	1	948910	+		32122	15715	26436	26461	35452	35452					0.15636087133373167
LLLLLSLPQ	9	Unmodified	_LLLLLSLPQ_					0	0	0		nc|ENSG00000143382|Q6UY14-2|ADAMTSL4;ENSG00000143382|ENST00000271643|ADAMTSL4;nc|ENSG00000143382|Q6UY14-3|ADAMTSL4	nc|ENSG00000143382|Q6UY14-2|ADAMTSL4	nc|ENSG00000143382|Q6UY14-2|ADAMTSL4	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.3248596191406	2	505.336436	1008.65832	-0.07298	-3.6879E-05	3.6181	0.0018284	3.5451	0.0017915	505.33830431273526	105.62	0.62401	104.28	104.09	104.72	-1.3482					23	11	3	0	0	0	0.027433	1	7408	7408		38.806	8.3025	1	90897			32123	5046	26437	26462	35453	35453					0.15433551556270686
LLLLLTSLY	9	Unmodified	_LLLLLTSLY_					0	0	0			REV__ENSG00000170373|ENST00000304749|CST1	REV__ENSG00000170373|ENST00000304749|CST1	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.8245849609375	2	524.836268	1047.65798	1.9678	0.0010327	3.5927	0.0018856	5.5604	0.0029183	524.8379140741972	86.103	0.12015	86.103	86.033	86.153	0					4	2	2	0	0	0	0.027462	1	9058	9058		8.2313	0.54101	1	87830	+		32124	21534	26438	26463	35454	35454					0.13606131836445456
LLLLLVPS	8	Unmodified	_LLLLLVPS_					0	0	0		ENSG00000050393|ENST00000379170|MCUR1;nc|ENSG00000050393|Q96AQ8-2|MCUR1	ENSG00000050393|ENST00000379170|MCUR1	ENSG00000050393|ENST00000379170|MCUR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.2895812988281	2	434.299322	866.584091	1.9588	0.00085069	1.3217	0.00057401	3.2805	0.0014247	434.2995517945827	85.598	0.73344	82.951	82.61	83.344	-2.6463					18	14	2	0	0	0	0.028476	1	7242	7242		23.037	0	1	31171			32125	1179	26439	26464	35455	35455					0.14546208464753363
LLLLLWVL	8	Unmodified	_LLLLLWVL_					0	0	0			REV__ENSG00000158859|ENST00000367996|ADAMTS4	REV__ENSG00000158859|ENST00000367996|ADAMTS4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.2550964355469	2	491.838614	981.662675	-2.2522	-0.0011077	-2.7427	-0.001349	-4.9949	-0.0024567	491.83711777459774	88.206	1.2541	85.603	85.277	86.532	-2.6027					47	24	3	0	0	0	0.028476	1	7569	7569		16.705	0	1	124370	+		32126	20586	26440	26465	35456	35456					0.1711106076984379
LLLLLWVL	8	Unmodified	_LLLLLWVL_					0	0	0			REV__ENSG00000158859|ENST00000367996|ADAMTS4	REV__ENSG00000158859|ENST00000367996|ADAMTS4	MULTI-MATCH	OvCa99_classI_Rep5	1		2	491.838614	981.662675	1.8647	0.00091713	-3.3355	-0.0016405	-1.4708	-0.00072341	491.83661397898834	85.166	0.24799	85.166	84.963	85.211	0	-0.25114	0.00078444	NaN	16.705	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76497	+		32127	20586	26440	26465							0.1711106076984379
LLLLLWVL	8	Unmodified	_LLLLLWVL_					0	0	0			REV__ENSG00000158859|ENST00000367996|ADAMTS4	REV__ENSG00000158859|ENST00000367996|ADAMTS4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	491.838614	981.662675	1.0022	0.0004929	-6.0101	-0.002956	-5.008	-0.0024631	491.8355312284523	86.723	1.32	85.292	85.015	86.335	-1.4311	-0.1256	-0.0018465	NaN	16.705	49	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110760	+		32128	20586	26440	26465							0.1711106076984379
LLLLLWVL	8	Unmodified	_LLLLLWVL_					0	0	0			REV__ENSG00000158859|ENST00000367996|ADAMTS4	REV__ENSG00000158859|ENST00000367996|ADAMTS4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	491.838614	981.662675	-0.94255	-0.00046358	-3.355	-0.0016501	-4.2976	-0.0021137	491.836825034018	87.785	1.3592	85.608	85.345	86.704	-2.1768	0.19069	0.00076523	NaN	16.705	55	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144620	+		32129	20586	26440	26465							0.1711106076984379
LLLLLYLI	8	Unmodified	_LLLLLYLI_					0	0	0			REV__L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|268|3|anti-sense	REV__L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|268|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	487.2820739746094	2	487.338447	972.662341	-1.0122	-0.00049331	1.0177	0.00049596	0.0054456	2.6538E-06	487.33817739327714	95.147	0.25118	93.251	93.111	93.362	-1.8956					6	4	2	0	0	0	0.028476	1	6190	6190		5.0869	0	1	7726.8	+		32130	28601	26441	26466	35457	35457					0.17491641049991813
LLLLLYLI	8	Unmodified	_LLLLLYLI_					0	0	0			REV__L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|268|3|anti-sense	REV__L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|268|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	487.2820129394531	2	487.338447	972.662341	-0.9892	-0.00048208	2.7864	0.0013579	1.7972	0.00087583	487.3390748690207	97.619	0.53983	95.86	95.62	96.16	-1.7595					14	10	2	0	0	0	0.028476	1	6502	6502		10.185	0	1	17582	+		32131	28601	26441	26466	35458	35458					0.17491641049991813
LLLLPGPAG	9	Unmodified	_LLLLPGPAG_					0	0	0		ENST00000553772.5_1_14:31344123-31349661:+|nuORF;nc|ENSG00000100473|O43405-2|COCH;ENSG00000100473|ENST00000396618|COCH	ENST00000553772.5_1_14:31344123-31349661:+|nuORF	ENST00000553772.5_1_14:31344123-31349661:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	425.77496337890625	2	425.773471	849.53239	-0.95445	-0.00040638	4.1695	0.0017752	3.215	0.0013689	425.7751660668595	68.762	2.1455	66.142	65.721	67.866	-2.6203					132	42	5	0	0	0	0.68641	1	5459	5459		21.702	0	1	3515300			32132	2073	26442	26467	35459	35459					0.10160464770865474
LLLLPGPAG	9	Unmodified	_LLLLPGPAG_					0	0	0		ENST00000553772.5_1_14:31344123-31349661:+|nuORF;nc|ENSG00000100473|O43405-2|COCH;ENSG00000100473|ENST00000396618|COCH	ENST00000553772.5_1_14:31344123-31349661:+|nuORF	ENST00000553772.5_1_14:31344123-31349661:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	425.77410888671875	2	425.773471	849.53239	0.35721	0.00015209	2.8578	0.0012168	3.215	0.0013689	425.77457093952984	70.919	1.9242	68.349	67.916	69.84	-2.5707					106	36	5	0	0	0	0.70973	1	5723	5723		14.664	0.88877	1	1515700			32133	2073	26442	26467	35460	35460					0.10160464770865474
LLLLPRALS	9	Unmodified	_LLLLPRALS_					0	0	0		ENST00000409117.7_1_2:179316324-179318191:+|nuORF	ENST00000409117.7_1_2:179316324-179318191:+|nuORF	ENST00000409117.7_1_2:179316324-179318191:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3339538574219	2	498.334227	994.653902	0.2425	0.00012085	-0.5271	-0.00026267	-0.2846	-0.00014182	498.33387359588454	132.52	1.8753	132.29	131.93	133.81	-0.22696					110	37	5	0	0	0	0.053172	1	13128	13128		116.9	17.529	1	948910			32134	11514	26443	26468	35461	35461					0.15636087133384535
LLLLPRALS	9	Unmodified	_LLLLPRALS_					0	0	0		ENST00000409117.7_1_2:179316324-179318191:+|nuORF	ENST00000409117.7_1_2:179316324-179318191:+|nuORF	ENST00000409117.7_1_2:179316324-179318191:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3337707519531	2	498.334227	994.653902	3.0095	0.0014997	-3.4235	-0.001706	-0.41398	-0.0002063	498.33243610568087	134.14	2.7147	132.61	132.05	134.76	-1.5257					123	54	4	0	0	0	0.27546	1	12954	12954		65.803	2.4969	1	1105000			32135	11514	26443	26468	35462	35462					0.15636087133384535
LLLLPRSQP	9	Unmodified	_LLLLPRSQP_					0	0	0			REV__nc|ENSG00000215440|Q8NDH3-3|NPEPL1	REV__nc|ENSG00000215440|Q8NDH3-3|NPEPL1	MULTI-MSMS	OvCa9_classI_Rep3	3	518.82861328125	2	518.829309	1035.64407	1.7024	0.00088324	-2.0698	-0.0010739	-0.36745	-0.00019064	518.8281964515016	122.5	2.5536	121.47	120.64	123.19	-1.0286					133	48	4	0	0	0	0.24951	2	9412	9412;9461		68.787	4.5796	1	994930	+		32136	23317	26444	26469	35463;35464	35463					0.12766899127996112
LLLLPRSQP	9	Unmodified	_LLLLPRSQP_					0	0	0			REV__nc|ENSG00000215440|Q8NDH3-3|NPEPL1	REV__nc|ENSG00000215440|Q8NDH3-3|NPEPL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.8284912109375	2	518.829309	1035.64407	0.0085595	4.4409E-06	-0.59769	-0.0003101	-0.58913	-0.00030566	518.8289766262699	122.91	2.4522	121.55	121.01	123.46	-1.3666					110	48	3	0	0	0	0.21231	1	11634	11634		74.255	10.048	1	898440	+		32137	23317	26444	26469	35465	35465					0.12766899127996112
LLLLPVMLL	9	Oxidation (M)	_LLLLPVM(Oxidation (M))LL_		LLLLPVM(1)LL		LLLLPVM(49)LL	0	0	1		ENSG00000144339|ENST00000272771|TMEFF2;nc|ENSG00000144339|Q9UIK5-2|TMEFF2;nc|ENSG00000144339|Q9UIK5-3|TMEFF2	ENSG00000144339|ENST00000272771|TMEFF2	ENSG00000144339|ENST00000272771|TMEFF2	MULTI-MSMS	OvCa99_classI_Rep5	1	520.845947265625	2	520.843039	1039.67153	2.0406	0.0010628	3.7107	0.0019327	5.7512	0.0029955	520.8449154031456	121.38	0.60663	121.38	121.15	121.75	0					23	13	3	0	0	0	0.42921	1	13973	13973		49.211	10.189	1	126460			32138	5143	26445	26470	35466	35466		167			0.15327666344023783
LLLLPVMLL	9	Oxidation (M)	_LLLLPVM(Oxidation (M))LL_					0	0	1		ENSG00000144339|ENST00000272771|TMEFF2;nc|ENSG00000144339|Q9UIK5-2|TMEFF2;nc|ENSG00000144339|Q9UIK5-3|TMEFF2	ENSG00000144339|ENST00000272771|TMEFF2	ENSG00000144339|ENST00000272771|TMEFF2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	520.843039	1039.67153	-0.47725	-0.00024857	3.5676	0.0018582	3.0904	0.0016096	520.8446645843051	121.3	0.49416	121.1	121	121.49	-0.19719	-0.13916	-0.00012712	NaN	49.211	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10978			32139	5143	26445	26470				167			0.15327666344023783
LLLLQQISL	9	Unmodified	_LLLLQQISL_					0	0	0		ENSG00000126838|ENST00000261336|PZP;nc|ENSG00000126838|P20742-2|PZP	ENSG00000126838|ENST00000261336|PZP	ENSG00000126838|ENST00000261336|PZP	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.8771362304688	2	520.839342	1039.66413	2.1431	0.0011162	-0.11217	-5.8422E-05	2.0309	0.0010578	520.8392156467576	102.25	0.63898	102.25	102.08	102.72	0					27	14	3	0	0	0	0.027462	1	11400	11400		21.96	0	1	471160			32140	3805	26446	26471	35467	35467					0.14588650067935305
LLLLQQISL	9	Unmodified	_LLLLQQISL_					0	0	0		ENSG00000126838|ENST00000261336|PZP;nc|ENSG00000126838|P20742-2|PZP	ENSG00000126838|ENST00000261336|PZP	ENSG00000126838|ENST00000261336|PZP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	520.839342	1039.66413	-0.68464	-0.00035659	0.19183	9.9914E-05	-0.49281	-0.00025667	520.8396957648279	102.69	0.59167	102.01	101.79	102.38	-0.68459	-0.12142	0.00029069	NaN	26.693	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31181			32141	3805	26446	26471							0.14588650067935305
LLLLQTTMR	9	Unmodified	_LLLLQTTMR_					0	0	0			REV__FOLR1|p.S164Pfs*5|1|0.53|ENSG00000110195|chr11:72195742-72195743|-/ACCA|frameshift_variant	REV__FOLR1|p.S164Pfs*5|1|0.53|ENSG00000110195|chr11:72195742-72195743|-/ACCA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.8240966796875	2	544.828452	1087.64235	-5.1365	-0.0027985	-1.9002	-0.0010353	-7.0367	-0.0038338	544.8273952320496	155.45	0.90656	153.96	153.69	154.6	-1.4911					53	25	3	0	0	0	0.61208	1	15399	15399		30.504	2.6214	1	111000	+		32142	17976	26447	26472	35468	35468					0.10203522047731894
LLLLRSPYT	9	Unmodified	_LLLLRSPYT_					0	0	0		ENST00000338488.8_1_9:102584219-102584522:+|nuORF	ENST00000338488.8_1_9:102584219-102584522:+|nuORF	ENST00000338488.8_1_9:102584219-102584522:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	538.326416015625	2	538.329142	1074.64373	-5.5921	-0.0030104	1.7538	0.0009441	-3.8384	-0.0020663	538.3299819955096	158.56	1.0599	158.33	158.09	159.15	-0.22697					66	21	5	0	0	0	0.6653	1	16109	16109		24.203	0	1	327100			32143	10539	26448	26473	35469	35469					0.10939479408125408
LLLLSIGAT	9	Unmodified	_LLLLSIGAT_					0	0	0			REV__ENSG00000115841|ENST00000354545|RMDN2	REV__ENSG00000115841|ENST00000354545|RMDN2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.2247619628906	2	450.791861	899.569169	0.84238	0.00037974	-1.109	-0.00049995	-0.26667	-0.00012021	450.7911212183643	98.218	0.6037	95.839	95.725	96.328	-2.3786					17	11	2	0	0	0	0.027462	1	8764	8764		15.642	5.3766	1	17220	+		32144	18273	26449	26474	35470	35470					0.11536716596742735
LLLLSIGAT	9	Unmodified	_LLLLSIGAT_					0	0	0			REV__ENSG00000115841|ENST00000354545|RMDN2	REV__ENSG00000115841|ENST00000354545|RMDN2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	450.791861	899.569169	2.6044	0.001174	-2.5608	-0.0011544	0.043631	1.9668E-05	450.79047587405853	96.832	0.78528	95.874	95.629	96.414	-0.95856	-0.014243	-0.0010975	NaN	10.265	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18223	+		32145	18273	26449	26474							0.11536716596742735
LLLLSIGAT	9	Unmodified	_LLLLSIGAT_					0	0	0			REV__ENSG00000115841|ENST00000354545|RMDN2	REV__ENSG00000115841|ENST00000354545|RMDN2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	450.791861	899.569169	-0.35472	-0.0001599	-0.013916	-6.2731E-06	-0.36864	-0.00016618	450.7917023186688	97.71	0.84859	95.951	95.672	96.52	-1.7595	0.062828	0.0011987	NaN	10.265	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19858	+		32146	18273	26449	26474							0.11536716596742735
LLLLSLSN	8	Unmodified	_LLLLSLSN_					0	0	0		ENST00000264657.9_1_17:40467570-40467729:-|nuORF	ENST00000264657.9_1_17:40467570-40467729:-|nuORF	ENST00000264657.9_1_17:40467570-40467729:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	436.7747497558594	2	436.776211	871.537869	-1.3218	-0.00057733	-1.7819	-0.0007783	-3.1037	-0.0013556	436.77534043072393	144.04	2.131	143.81	143.2	145.33	-0.22697					119	42	4	0	0	0	0.74679	1	14444	14444		28.254	0	1	537180			32147	9934	26450	26475	35471	35471					0.0969614356265538
LLLLSLSN	8	Unmodified	_LLLLSLSN_					0	0	0		ENST00000264657.9_1_17:40467570-40467729:-|nuORF	ENST00000264657.9_1_17:40467570-40467729:-|nuORF	ENST00000264657.9_1_17:40467570-40467729:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	436.7744445800781	2	436.776211	871.537869	-2.6718	-0.001167	-0.40157	-0.0001754	-3.0734	-0.0013424	436.7759504548302	144.44	1.6886	143.47	143.1	144.79	-0.97299					107	33	5	0	0	0	0.74679	1	12059	12059		28.254	0	1	989010			32148	9934	26450	26475	35472	35472					0.0969614356265538
LLLLTLPAR	9	Unmodified	_LLLLTLPAR_					0	0	0		ENSG00000134245|ENST00000369684|WNT2B	ENSG00000134245|ENST00000369684|WNT2B	ENSG00000134245|ENST00000369684|WNT2B	MULTI-MSMS	OvCa9_classI_Rep2	2	505.3417663574219	2	505.342052	1008.66955	-0.1959	-9.8999E-05	-1.673	-0.00084545	-1.8689	-0.00094444	505.3408478582907	133.56	2.7048	133.33	132.13	134.83	-0.22697					158	54	5	0	0	0	0.42057	1	13203	13203		50.025	4.0726	1	1592700			32149	4266	26451	26476	35473	35473					0.16556373650416845
LLLLTLPAR	9	Unmodified	_LLLLTLPAR_					0	0	0		ENSG00000134245|ENST00000369684|WNT2B	ENSG00000134245|ENST00000369684|WNT2B	ENSG00000134245|ENST00000369684|WNT2B	MULTI-MSMS	OvCa9_classI_Rep3	3	505.34051513671875	2	505.342052	1008.66955	-1.2256	-0.00061935	0.24452	0.00012356	-0.9811	-0.00049579	505.3419478940064	134.8	1.6252	133.68	133.41	135.03	-1.1226					106	32	5	0	0	0	0.44294	1	10922	10922		47.916	0	1	959590			32150	4266	26451	26476	35474	35474					0.16556373650416845
LLLLTSLYQA	10	Unmodified	_LLLLTSLYQA_					0	0	0			REV__ENSG00000170373|ENST00000304749|CST1	REV__ENSG00000170373|ENST00000304749|CST1	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.3124389648438	2	567.842082	1133.66961	2.5275	0.0014352	-0.6713	-0.00038119	1.8562	0.0010541	567.8415856418881	84.357	0.46625	84.357	83.965	84.431	0					15	10	2	0	0	0	0.026956	1	8800	8800		26.693	10.22	1	526700	+		32151	21534	26452	26477	35475	35475					0.1081232885976533
LLLLVLVPRW	10	Unmodified	_LLLLVLVPRW_					0	0	0			REV__tr|A0A553SPJ7|A0A553SPJ7_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_26500PE=3SV=1	REV__tr|A0A553SPJ7|A0A553SPJ7_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_26500PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	611.2662353515625	2	611.407727	1220.8009	2.8897	0.0017668	-3.4363	-0.002101	-0.54662	-0.00033421	611.9074660296832	86.453	0.19974	86.453	86.311	86.511	0					6	4	2	0	0	0	0.027302	1	9100	9100		7.1934	0	1	269970	+		32152	30543	26453	26478	35476	35476					0.19933184018327665
LLLLVPIDIG	10	Unmodified	_LLLLVPIDIG_					0	0	0			REV__nc|ENSG00000130529|Q8TD43-2|TRPM4	REV__nc|ENSG00000130529|Q8TD43-2|TRPM4	MULTI-MSMS	OvCa9_classI_Rep2	2	533.3472290039062	2	533.349543	1064.68453	-0.61869	-0.00032998	-2.5495	-0.0013598	-3.1682	-0.0016898	533.348160054999	92.553	1.6565	91.385	91.024	92.68	-1.168					102	31	5	0	0	0	0.59639	1	8230	8230		42.474	0	1	1110800	+		32153	18952	26454	26479	35477	35477					0.15477820727755898
LLLLWLKP	8	Unmodified	_LLLLWLKP_					0	0	0		tr|A0A553SPH0|A0A553SPH0_NIACIMembraneproteinYkvIOS=NialliacirculansOX=1397GN=CEQ21_26370PE=4SV=1	tr|A0A553SPH0|A0A553SPH0_NIACIMembraneproteinYkvIOS=NialliacirculansOX=1397GN=CEQ21_26370PE=4SV=1	tr|A0A553SPH0|A0A553SPH0_NIACIMembraneproteinYkvIOS=NialliacirculansOX=1397GN=CEQ21_26370PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3345947265625	2	498.336239	994.657924	-0.9719	-0.00048433	-3.678	-0.0018329	-4.6499	-0.0023172	498.3344016114543	124.22	1.0633	122.83	122.32	123.39	-1.3908					81	20	5	0	0	0	0.71055	1	11796	11796		41.208	0.63575	1	4028000			32154	34044	26455	26480	35478	35478					0.16038176627091616
LLLLWQLL	8	Unmodified	_LLLLWQLL_					0	0	0			REV__ENSG00000168878|ENST00000519937|SFTPB	REV__ENSG00000168878|ENST00000519937|SFTPB	MULTI-MSMS	OvCa9_classI_Rep2	2	506.3313293457031	2	506.333696	1010.65284	-0.49607	-0.00025117	-3.7021	-0.0018745	-4.1982	-0.0021257	506.331740533061	135.27	1.2754	135.05	134.74	136.01	-0.22697					65	25	4	0	0	0	0.67106	1	13410	13410		49.211	0	1	139920	+		32155	21412	26456	26481	35479	35479					0.14793872764482785
LLLMQEGMP	9	Unmodified	_LLLMQEGMP_					0	0	0		ENSG00000115556|ENST00000450993|PLCD4;nc|ENSG00000115556|Q9BRC7-2|PLCD4;ENST00000483685.5_1_2:219472784-219496902:+|nuORF;ENST00000469493.5_1_2:219472784-219492999:+|nuORF	ENSG00000115556|ENST00000450993|PLCD4	ENSG00000115556|ENST00000450993|PLCD4	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2794189453125	2	516.266838	1030.51912	1.945	0.0010042	2.5715	0.0013276	4.5165	0.0023317	516.267939623326	86.898	1.327	86.898	86.594	87.921	0					69	31	4	0	0	0	0.027455	1	9227	9227		51.335	10.557	1	2874400			32156	3106	26457	26482	35480	35480					0.005085226049459379
LLLMRKSVF	9	Unmodified	_LLLMRKSVF_					0	0	0			REV__ENST00000509376.5_1_4:52779756-52779993:+|nuORF	REV__ENST00000509376.5_1_4:52779756-52779993:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8373413085938	2	553.841362	1105.66817	-0.20085	-0.00011124	-3.4799	-0.0019273	-3.6807	-0.0020385	553.8393635694105	102.91	1.6773	102.23	101.79	103.46	-0.68459					110	33	4	0	0	0	0.36502	1	9523	9523		55.504	11.387	1	671320	+		32157	26926	26458	26483	35481	35481					0.11956416290013294
LLLMRLVAKA	10	Unmodified	_LLLMRLVAKA_					0	0	0			REV__ENSG00000121680|ENST00000378750|PEX16	REV__ENSG00000121680|ENST00000378750|PEX16	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.326171875	2	564.370287	1126.72602	1.0448	0.00058963	0.7991	0.00045099	1.8439	0.0010406	564.3706934408885	102.85	0.31467	100.65	100.52	100.83	-2.1994					8	5	2	0	0	0	0.027117	1	9290	9290		23.042	6.5693	1	14020	+		32158	18550	26459	26484	35482	35482					0.16772678215443193
LLLMSPVVV	9	Unmodified	_LLLMSPVVV_					0	0	0			REV__nc|ENSG00000164038|Q86UD5-2|SLC9B2	REV__nc|ENSG00000164038|Q86UD5-2|SLC9B2	MSMS	OvCa9_classI_Rep4_	4	485.8017578125	2	485.803914	969.593275	NaN	NaN	NaN	NaN	NaN	NaN	NaN	151.07	1	149.63	149.13	150.13	-1.4344								0	0	0	0.21446	1	14929	14929		24.203	1.1603	1		+		32159	20924	26460	26485	35483	35483					0.10726233758782655
LLLNGYRDI	9	Unmodified	_LLLNGYRDI_					0	0	0			REV__tr|A0A7D6VP08|A0A7D6VP08_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_15305PE=3SV=1	REV__tr|A0A7D6VP08|A0A7D6VP08_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_15305PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	538.8627319335938	2	538.808574	1075.60259	-0.20238	-0.00010905	2.5073	0.0013509	2.3049	0.0012419	538.8101587008141	131.99	0.68153	131.76	131.5	132.18	-0.22696					28	13	3	0	0	0	0.027455	1	12999	12999		60.972	15.02	1	40615	+		32160	31220	26461	26486	35484	35484					0.06781718368665679
LLLNLLGSS	9	Unmodified	_LLLNLLGSS_					0	0	0			REV__ENSG00000132326|ENST00000254657|PER2	REV__ENSG00000132326|ENST00000254657|PER2	MULTI-MSMS	OvCa9_classI_Rep3	3	465.2856140136719	2	465.286943	928.559333	-2.7433	-0.0012764	-0.30458	-0.00014172	-3.0479	-0.0014181	465.28670210862947	142.67	1.0374	141.66	141.38	142.42	-1.0106					57	20	4	0	0	0	0.59983	1	11865	11865		31.955	1.4512	1	145060	+		32161	19068	26462	26487	35485	35485					0.09219528591381732
LLLNQPKI	8	Unmodified	_LLLNQPKI_					0	0	0			REV__AURKC|p.E170Q|1|0.64|ENSG00000105146|chr19:57233532-57233532|G/C|missense_variant	REV__AURKC|p.E170Q|1|0.64|ENSG00000105146|chr19:57233532-57233532|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	469.8062744140625	2	469.805303	937.596052	-0.20809	-9.776E-05	0.20342	9.5568E-05	-0.0046666	-2.1924E-06	469.8053033638793	89.853	1.7351	87.772	87.49	89.225	-2.0805					74	33	3	0	0	0	0.33245	1	5555	5555		101.21	0	1	694800	+		32162	15689	26463	26488	35486	35486					0.12475825207945945
LLLNTALTLML	11	Unmodified	_LLLNTALTLML_					0	0	0			REV__nc|ENSG00000182938|Q7RTS5|OTOP3	REV__nc|ENSG00000182938|Q7RTS5|OTOP3	MULTI-MSMS	OvCa99_classI_Rep5	1	608.8737182617188	2	608.372692	1214.73083	1.9503	0.0011865	-2.8779	-0.0017508	-0.92756	-0.0005643	608.3708003006935	126.56	0.55097	126.56	126.28	126.83	0					20	11	2	0	0	0	0.38665	1	14637	14637		62.107	1.9892	1	365040	+		32163	29045	26464	26489	35487	35487					0.13205517567530478
LLLNTALTLML	11	Unmodified	_LLLNTALTLML_					0	0	0			REV__nc|ENSG00000182938|Q7RTS5|OTOP3	REV__nc|ENSG00000182938|Q7RTS5|OTOP3	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	608.372692	1214.73083	1.9503	0.0011865	-2.8779	-0.0017508	-0.92756	-0.0005643	608.3708003006935	126.56	0.55097	126.56	126.28	126.83	0	0	0	NaN	62.107	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	365040	+		32164	29045	26464	26489							0.13205517567530478
LLLPAARLL	9	Unmodified	_LLLPAARLL_					0	0	0			REV__ENSG00000070018|ENST00000261349|LRP6	REV__ENSG00000070018|ENST00000261349|LRP6	MULTI-MSMS	OvCa9_classI_Rep2	2	490.3364562988281	2	490.33677	978.658987	0.31976	0.00015679	-1.1553	-0.00056648	-0.83553	-0.00040969	490.3362879264998	135.18	3.9777	134.96	134.64	138.62	-0.22697					225	81	5	0	0	0	0.6959	1	13661	13661		19.36	0	1	7114000	+		32165	16872	26465	26490	35488	35488					0.16880390995981998
LLLPALLSR	9	Unmodified	_LLLPALLSR_					0	0	0			REV__ENST00000547344.5_1_12:58159017-58160836:-|nuORF	REV__ENST00000547344.5_1_12:58159017-58160836:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.333740234375	2	498.334227	994.653902	0.2425	0.00012085	-0.5271	-0.00026267	-0.2846	-0.00014182	498.33387359588454	132.52	1.8753	132.29	131.93	133.81	-0.22696					110	37	5	0	0	0	0.11171	2	13122	13122;13141		94.006	0	1	948910	+		32166	18014	26466	26491	35489;35490	35489					0.15636087133373167
LLLPFFFL	8	Unmodified	_LLLPFFFL_					0	0	0		ENST00000322038.5_2_18:72922772-72923027:+|nuORF	ENST00000322038.5_2_18:72922772-72923027:+|nuORF	ENST00000322038.5_2_18:72922772-72923027:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	505.31134033203125	2	505.30969	1008.60483	2.1315	0.001077	2.6169	0.0013223	4.7483	0.0023994	505.31095689985216	77.06	1.5754	77.06	76.799	78.374	0					91	37	5	0	0	0	0.69862	1	7822	7822		43.626	0	1	18511000			32167	10381	26467	26492	35491	35491					0.10086798844417899
LLLPGGLRPL	10	Unmodified	_LLLPGGLRPL_					0	0	0		ENST00000392341.5_1_17:80197025-80197367:+|nuORF	ENST00000392341.5_1_17:80197025-80197367:+|nuORF	ENST00000392341.5_1_17:80197025-80197367:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.3037109375	2	524.847502	1047.68045	-0.78447	-0.00041173	0.85698	0.00044979	0.072516	3.806E-05	524.8480158712888	103.43	0.24702	102.75	102.62	102.87	-0.68459					7	4	2	0	0	0	0.026669	1	9559	9559		47.916	14.4	1	11794			32168	11217	26468	26493	35492	35492					0.158517760246923
LLLPGGLRPL	10	Unmodified	_LLLPGGLRPL_					0	0	0		ENST00000392341.5_1_17:80197025-80197367:+|nuORF	ENST00000392341.5_1_17:80197025-80197367:+|nuORF	ENST00000392341.5_1_17:80197025-80197367:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	524.847502	1047.68045	-0.80155	-0.00042069	0.95761	0.0005026	0.15606	8.1906E-05	524.8482242067927	104.97	0.35619	102.85	102.69	103.05	-2.1192	0.053763	2.6837E-05	NaN	47.916	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8700.5			32169	11217	26468	26493							0.158517760246923
LLLPIETT	8	Unmodified	_LLLPIETT_					0	0	0		ENST00000305632.9_1_7:72984486-72984732:-|nuORF	ENST00000305632.9_1_7:72984486-72984732:-|nuORF	ENST00000305632.9_1_7:72984486-72984732:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	450.2744445800781	2	450.276044	898.537535	-3.7498	-0.0016884	0.58642	0.00026405	-3.1634	-0.0014244	450.27623858459356	147.83	1.7988	146.88	146.5	148.3	-0.95119					100	35	5	0	0	0	0.74595	1	12525	12525		14.664	0	1	751980			32170	10238	26469	26494	35493	35493					0.08420723842812095
LLLPILEVL	9	Unmodified	_LLLPILEVL_					0	0	0			REV__L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|277|2|anti-sense	REV__L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|277|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	511.8444519042969	2	511.846636	1021.67872	-0.69047	-0.00035341	-1.9345	-0.00099014	-2.6249	-0.0013436	511.84548257829687	83.844	1.9051	82.298	81.692	83.597	-1.5462					91	37	4	0	0	0	0.6926	1	7205	7205		20.482	1.1219	1	636290	+		32171	28511	26470	26495	35494	35494					0.1687472221610733
LLLPKASGPQ	10	Unmodified	_LLLPKASGPQ_					0	0	0		nc|ENSG00000174038|Q5VYM1-3|SPATA31G1;nc|ENSG00000174038|Q5VYM1-2|SPATA31G1;ENSG00000174038|ENST00000312292|C9orf131	nc|ENSG00000174038|Q5VYM1-3|SPATA31G1	nc|ENSG00000174038|Q5VYM1-3|SPATA31G1	MULTI-MSMS	OvCa9_classI_Rep2	2	512.3131713867188	2	512.313492	1022.61243	-2.5394	-0.001301	-0.29235	-0.00014978	-2.8317	-0.0014507	512.3132374386557	36.134	0.74118	33.425	33.201	33.942	-2.7097					37	14	4	0	0	0	0.6349	1	1525	1525		37.812	8.662	1	78933			32172	7435	26471	26496	35495	35495					0.10202906374047416
LLLPKSTG	8	Unmodified	_LLLPKSTG_					0	0	0			REV__ENST00000429611.7_1_7:27138873-27139525:+|nuORF	REV__ENST00000429611.7_1_7:27138873-27139525:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	414.7621154785156	2	414.763104	827.511654	-0.47497	-0.000197	-2.6059	-0.0010808	-3.0808	-0.0012778	414.761930419043	140.08	2.1671	139.86	139.4	141.57	-0.22696					123	43	4	0	0	0	0.73938	1	14096	14096		31.955	3.7006	1	474850	+		32173	25702	26472	26497	35496	35496					0.09099874391199592
LLLPKSTG	8	Unmodified	_LLLPKSTG_					0	0	0			REV__ENST00000429611.7_1_7:27138873-27139525:+|nuORF	REV__ENST00000429611.7_1_7:27138873-27139525:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	414.76141357421875	2	414.763104	827.511654	-1.3763	-0.00057084	-1.7682	-0.00073337	-3.1445	-0.0013042	414.7623056204016	140.83	3.4972	139.8	137.66	141.16	-1.0339					138	70	4	0	0	0	0.74971	1	11651	11651		26.796	1.3459	1	1080700	+		32174	25702	26472	26497	35497	35497					0.09099874391199592
LLLPKSTG	8	Unmodified	_LLLPKSTG_					0	0	0			REV__ENST00000429611.7_1_7:27138873-27139525:+|nuORF	REV__ENST00000429611.7_1_7:27138873-27139525:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.76226806640625	2	414.763104	827.511654	0.81	0.00033596	-4.0428	-0.0016768	-3.2328	-0.0013408	414.7613377091018	141.2	2.8207	139.74	138.79	141.61	-1.4627					131	54	4	0	0	0	0.74679	1	13771	13771		28.254	1.4582	1	1536400	+		32175	25702	26472	26497	35498	35498					0.09099874391199592
LLLPLAFEDL	10	Unmodified	_LLLPLAFEDL_					0	0	0		ENST00000483222.5_1_22:50686861-50687933:-|nuORF;ENST00000498366.5_1_22:50686861-50689256:-|nuORF	ENST00000483222.5_1_22:50686861-50687933:-|nuORF	ENST00000483222.5_1_22:50686861-50687933:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.2838134765625	2	572.336633	1142.65871	1.9422	0.0011116	-3.3658	-0.0019264	-1.4237	-0.00081481	572.3346179899921	98.058	0.55328	98.058	97.823	98.376	0					25	12	3	0	0	0	0.026822	1	10774	10774		38.806	0	1	643640			32176	12584	26473	26498	35499	35499					0.09308926485482516
LLLPLELLV	9	Unmodified	_LLLPLELLV_					0	0	0			REV__ENSG00000167850|ENST00000330793|CD300C	REV__ENSG00000167850|ENST00000330793|CD300C	MULTI-MSMS	OvCa9_classI_Rep2	2	511.84393310546875	2	511.846636	1021.67872	-0.69047	-0.00035341	-1.9345	-0.00099014	-2.6249	-0.0013436	511.84548257829687	83.844	1.9051	82.298	81.692	83.597	-1.5462					91	37	4	0	0	0	0.65476	1	7218	7218		25.45	2.4077	1	636290	+		32177	21311	26474	26499	35500	35500					0.1687472221609596
LLLPLGPRA	9	Unmodified	_LLLPLGPRA_					0	0	0		ENST00000464180.1_1_17:39976744-39976852:+|nuORF	ENST00000464180.1_1_17:39976744-39976852:+|nuORF	ENST00000464180.1_1_17:39976744-39976852:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	476.2933654785156	2	475.313295	948.612037	1.0897	0.00051797	-0.81778	-0.0003887	0.27196	0.00012927	475.31275208329106	107.76	0.58151	106.56	106.27	106.85	-1.1978					17	10	2	0	0	0	0.027462	1	7644	7644		24.203	0	1	19624			32178	12242	26475	26500	35501	35501					0.1356753144485765
LLLPLTLRA	9	Unmodified	_LLLPLTLRA_					0	0	0		nc|ENSG00000276717|A8MTI9|PRSS47P	nc|ENSG00000276717|A8MTI9|PRSS47P	nc|ENSG00000276717|A8MTI9|PRSS47P	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.3424987792969	2	505.342052	1008.66955	1.0363	0.00052367	-0.45517	-0.00023001	0.58111	0.00029366	505.3418962874315	139.15	0.72646	137.62	137.29	138.01	-1.5284					26	13	2	0	0	0	0.63422	1	13545	13545		27.882	1.0861	1	48709			32179	15375	26476	26501	35502	35502					0.16556373650416845
LLLPPKQP	8	Unmodified	_LLLPPKQP_					0	0	0			REV__ENST00000517609.5_1_8:124429070-124447771:+|nuORF	REV__ENST00000517609.5_1_8:124429070-124447771:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	453.75689697265625	2	453.294571	904.574589	2.3693	0.001074	0.40293	0.00018264	2.7722	0.0012566	453.294429570408	76.845	0.93037	76.845	76.28	77.211	0					33	22	2	0	0	0	0.028476	1	7670	7670		35.201	9.7505	1	188440	+		32180	27013	26477	26502	35503	35503					0.11848440179232966
LLLPPLLQ	8	Unmodified	_LLLPPLLQ_					0	0	0		ENST00000587250.3_1_17:41180731-41180929:+|nuORF	ENST00000587250.3_1_17:41180731-41180929:+|nuORF	ENST00000587250.3_1_17:41180731-41180929:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	453.80572509765625	2	453.804771	905.59499	2.0438	0.0009275	0.56089	0.00025454	2.6047	0.001182	453.80475198792846	134.76	0.47224	134.76	134.56	135.04	0					17	10	2	0	0	0	0.67106	1	15689	15689		49.211	0	1	166660			32181	14058	26478	26503	35504	35504					0.13841610839051555
LLLPPPWPD	9	Unmodified	_LLLPPPWPD_					0	0	0		ENST00000334805.10_1_11:72492260-72504101:-|nuORF	ENST00000334805.10_1_11:72492260-72504101:-|nuORF	ENST00000334805.10_1_11:72492260-72504101:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2577514648438	2	524.29731	1046.58007	0.32037	0.00016797	2.3354	0.0012244	2.6557	0.0013924	524.2978910059531	101.88	0.98295	101.88	101.61	102.59	0					52	22	3	0	0	0	0.027462	1	11323	11323		12.959	0	1	1384200			32182	10491	26479	26504	35505	35505					0.05864118971044263
LLLPQKGYN	9	Unmodified	_LLLPQKGYN_					0	0	0			REV__nc|ENSG00000184110|Q99613-2|EIF3C	REV__nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3027954101562	2	523.305667	1044.59678	-1.2665	-0.00066275	-2.9732	-0.0015559	-4.2396	-0.0022186	523.3039817928272	135.89	3.3837	134.79	133.42	136.8	-1.1076					145	68	3	0	0	0	0.52083	1	11070	11070		40.573	7.057	1	55052	+		32183	22404	26480	26505	35506	35506					0.0762661985700106
LLLPQLLPP	9	Unmodified	_LLLPQLLPP_					0	0	0			REV__ENSG00000131400|ENST00000253719|NAPSA	REV__ENSG00000131400|ENST00000253719|NAPSA	MULTI-MSMS	OvCa99_classI_Rep5	1	502.33148193359375	2	502.331153	1002.64775	1.6292	0.00081841	0.21354	0.00010727	1.8428	0.00092567	502.3312810966275	125.23	0.55101	125.23	125.02	125.57	0					27	14	2	0	0	0	0.44294	1	14469	14469		47.916	3.3845	1	205750	+		32184	19013	26481	26506	35507	35507					0.1465356890186058
LLLPQLLPP	9	Unmodified	_LLLPQLLPP_					0	0	0			REV__ENSG00000131400|ENST00000253719|NAPSA	REV__ENSG00000131400|ENST00000253719|NAPSA	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	502.331153	1002.64775	1.6292	0.00081841	0.21354	0.00010727	1.8428	0.00092567	502.3312810966275	125.23	0.55101	125.23	125.02	125.57	0	0	0	NaN	47.916	27	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	205750	+		32185	19013	26481	26506							0.1465356890186058
LLLPQQLL	8	Unmodified	_LLLPQQLL_					0	0	0		nc|ENSG00000188655|P60153|RNASE9;ENSG00000188655|ENST00000404716|RNASE9	nc|ENSG00000188655|P60153|RNASE9	nc|ENSG00000188655|P60153|RNASE9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.3027648925781	2	469.307678	936.600803	0.82323	0.00038635	-0.96846	-0.0004545	-0.14522	-6.8155E-05	469.3071051432091	111.59	1.1581	110.08	109.79	110.95	-1.5111					40	21	2	0	0	0	0.028476	1	10269	10269		20.482	1.1219	1	154050			32186	8490	26482	26507	35508	35508					0.12996709350716174
LLLPQRAF	8	Unmodified	_LLLPQRAF_					0	0	0			REV__nc|ENSG00000164488|Q5SW24-3|DACT2	REV__nc|ENSG00000164488|Q5SW24-3|DACT2	MULTI-MSMS	OvCa9_classI_Rep3	3	479.2973937988281	2	479.297645	956.580737	-0.26237	-0.00012575	0.061204	2.9335E-05	-0.20117	-9.6419E-05	479.29752817551383	116.42	1.3352	115.38	115	116.33	-1.0414					70	26	3	0	0	0	0.68312	1	8718	8718		46.766	0	1	529340	+		32187	20991	26483	26508	35509	35509					0.10070958410756248
LLLPRAQSVL	10	Unmodified	_LLLPRAQSVL_					0	0	0		ENSG00000072071|ENST00000361434|ADGRL1;nc|ENSG00000072071|O94910|ADGRL1	ENSG00000072071|ENST00000361434|ADGRL1	ENSG00000072071|ENST00000361434|ADGRL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.3533325195312	2	555.355691	1108.69683	-5.7234	-0.0031785	1.8077	0.0010039	-3.9157	-0.0021746	555.3566390635189	159.36	1.8651	157.77	157.41	159.27	-1.5858					127	42	5	0	0	0	0.65434	1	15775	15775		35.618	0	1	1093300			32188	1462	26484	26509	35510	35510					0.14682857190791765
LLLPRLAVT	9	Unmodified	_LLLPRLAVT_					0	0	0			REV__ENST00000376395.8_2_9:86322580-86322796:-|nuORF	REV__ENST00000376395.8_2_9:86322580-86322796:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.33349609375	2	498.334227	994.653902	0.2425	0.00012085	-0.5271	-0.00026267	-0.2846	-0.00014182	498.33387359588454	132.52	1.8753	132.29	131.93	133.81	-0.22696					110	37	5	0	0	0	0.079296	2	13110	13104;13110		102.77	0	1	948910	+		32189	25098	26485	26510	35511;35512	35512					0.15636087133361798
LLLPSAPN	8	Unmodified	_LLLPSAPN_					0	0	0		ENSG00000107951|ENST00000263063|MTPAP;nc|ENSG00000107951|Q9NVV4-2|MTPAP;ENST00000488290.5_1_10:30602540-30654262:-|nuORF	ENSG00000107951|ENST00000263063|MTPAP	ENSG00000107951|ENST00000263063|MTPAP	MULTI-MSMS	OvCa9_classI_Rep2	2	412.746337890625	2	412.747453	823.480354	0.75275	0.0003107	-3.7611	-0.0015524	-3.0083	-0.0012417	412.74581316945023	134.99	1.618	134.76	134.29	135.91	-0.22696					65	32	3	0	0	0	0.75991	1	13366	13366		21.702	2.3424	1	284470			32190	2629	26486	26511	35513	35513					0.06155301357091503
LLLPTGRLI	9	Unmodified	_LLLPTGRLI_					0	0	0			REV__tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	REV__tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3338928222656	2	498.334227	994.653902	-0.6989	-0.00034829	0.47295	0.00023569	-0.22596	-0.0001126	498.33435878229506	133.81	2.0717	132.69	132.27	134.34	-1.1226					102	41	4	0	0	0	0.46377	1	10847	10847		45.952	4.7436	1	981140	+		32191	30885	26487	26512	35514	35514					0.15636087133384535
LLLPTGRLI	9	Unmodified	_LLLPTGRLI_					0	0	0			REV__tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	REV__tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.333984375	2	498.334227	994.653902	-1.8174	-0.00090567	1.0953	0.00054583	-0.72208	-0.00035984	498.334772441205	125.12	4.2738	123.72	123.39	127.66	-1.3908					210	84	5	0	0	0	0.18193	1	11928	11928		79.451	2.6769	1	4129000	+		32192	30885	26487	26512	35515	35515					0.15636087133384535
LLLPTPPGLAQ	11	Unmodified	_LLLPTPPGLAQ_					0	0	0			REV__ENST00000561123.2_1_15:77864640-77900952:+|nuORF	REV__ENST00000561123.2_1_15:77864640-77900952:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.3409423828125	2	560.342249	1118.66995	-5.405	-0.0030286	1.8017	0.0010096	-3.6033	-0.0020191	560.3432112723539	161.88	2.7705	160.26	159.52	162.29	-1.6239					146	74	5	0	0	0	0.72499	1	16089	16089		15.642	0.77694	1	403070	+		32193	27631	26488	26513	35516	35516					0.11535748579581195
LLLPTPSA	8	Unmodified	_LLLPTPSA_					0	0	0			REV__ENST00000569143.1_1_16:777475-778030:+|nuORF	REV__ENST00000569143.1_1_16:777475-778030:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	406.24847412109375	2	406.249829	810.485105	0.12737	5.1745E-05	-3.126	-0.00127	-2.9987	-0.0012182	406.2484453732125	140.19	2.0181	139.96	139.4	141.42	-0.22697					109	40	4	0	0	0	0.75991	1	13995	13995		21.702	0	1	304300	+		32194	27722	26489	26514	35517	35517					0.07228185499843676
LLLQPTRTG	9	Unmodified	_LLLQPTRTG_					0	0	0		ENST00000473429.5_1_1:110584363-110592127:+|nuORF;nc|ENSG00000143093|Q5VSL9-3|STRIP1	ENST00000473429.5_1_1:110584363-110592127:+|nuORF	ENST00000473429.5_1_1:110584363-110592127:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	499.7662353515625	2	499.803291	997.59203	0.19517	9.7545E-05	-0.52229	-0.00026104	-0.32712	-0.0001635	499.8027631772898	66.452	0.7462	63.756	63.418	64.164	-2.6958					24	14	2	0	0	0	0.027462	1	5116	5116		20.947	3.582	1	30403			32195	12410	26490	26515	35518	35518					0.09313735714238192
LLLQQQQQL	9	Unmodified	_LLLQQQQQL_					0	0	0			REV__ENSG00000236609|ENST00000457543|ZNF853	REV__ENSG00000236609|ENST00000457543|ZNF853	MULTI-MSMS	OvCa99_classI_Rep5	1	556.3290405273438	2	556.327131	1110.63971	2.1939	0.0012205	0.8598	0.00047833	3.0537	0.0016988	556.3275426423406	96.774	0.59023	96.774	96.418	97.008	0					30	13	3	0	0	0	0.062324	1	10615	10615		111.65	0	1	1600100	+		32196	23413	26491	26516	35519	35519					0.08881389914427018
LLLQRGSPE	9	Unmodified	_LLLQRGSPE_					0	0	0		ENST00000496575.1_1_22:31289665-31289989:+|nuORF	ENST00000496575.1_1_22:31289665-31289989:+|nuORF	ENST00000496575.1_1_22:31289665-31289989:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.267822265625	2	506.792924	1011.57129	-2.98	-0.0015102	0.88787	0.00044996	-2.0921	-0.0010603	506.7931581886758	88.245	0.55615	85.643	85.377	85.933	-2.6027					12	10	2	0	0	0	0.027433	1	7533	7533		45.972	5.9141	1	14619			32197	12790	26492	26517	35520	35520					0.06597145334581
LLLQSYGSI	9	Unmodified	_LLLQSYGSI_					0	0	0			REV__tr|A0A7D6VRI1|A0A7D6VRI1_9CLOTHistidineproteinkinaseSaeSOS=ClostridiumintestinaleOX=36845GN=HZF06_00955PE=4SV=1	REV__tr|A0A7D6VRI1|A0A7D6VRI1_9CLOTHistidineproteinkinaseSaeSOS=ClostridiumintestinaleOX=36845GN=HZF06_00955PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	497.28424072265625	2	497.2844	992.554247	1.7752	0.0008828	-2.363	-0.0011751	-0.58777	-0.00029229	497.28311547037197	134.32	1.5876	134.32	134.06	135.64	0					65	34	4	0	0	0	0.16562	1	15622	15622		82.241	7.9855	1	1166200	+		32198	31419	26493	26518	35521	35521					0.057672247287769096
LLLQTPPLH	9	Unmodified	_LLLQTPPLH_					0	0	0			REV__ENST00000370069.5_1_20:62219030-62219531:-|nuORF	REV__ENST00000370069.5_1_20:62219030-62219531:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	516.316162109375	2	516.316035	1030.61752	0.13924	7.1892E-05	-0.39337	-0.0002031	-0.25413	-0.00013121	516.3156185467874	115.81	0.88774	114.77	114.45	115.34	-1.0414					47	17	3	0	0	0	0.40667	1	8622	8622		51.335	1.8939	1	119080	+		32199	24954	26494	26519	35522	35522					0.10343210236646883
LLLQVHDEL	9	Unmodified	_LLLQVHDEL_					0	0	0		tr|A0A553SJZ3|A0A553SJZ3_NIACIDNApolymeraseIOS=NialliacirculansOX=1397GN=polAPE=3SV=1	tr|A0A553SJZ3|A0A553SJZ3_NIACIDNApolymeraseIOS=NialliacirculansOX=1397GN=polAPE=3SV=1	tr|A0A553SJZ3|A0A553SJZ3_NIACIDNApolymeraseIOS=NialliacirculansOX=1397GN=polAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3095703125	2	540.308406	1078.60226	1.25	0.00067539	-0.88154	-0.0004763	0.36846	0.00019908	540.3077955858466	119.23	3.2776	118.2	117.78	121.06	-1.0271					179	64	5	0	0	0	0.50149	1	9138	9138		42.396	0	1	415420			32200	33558	26495	26520	35523	35523					0.0661029864882039
LLLQWHRQ	8	Unmodified	_LLLQWHRQ_					0	0	0		ENST00000392793.5_3_11:121008340-121008424:+|nuORF	ENST00000392793.5_3_11:121008340-121008424:+|nuORF	ENST00000392793.5_3_11:121008340-121008424:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.79150390625	2	547.3169	1092.61925	1.5427	0.00084434	2.9448	0.0016117	4.4875	0.0024561	547.3184069567594	127.62	1.0084	127.62	127.32	128.32	0					32	21	2	0	0	0	0.028476	1	14825	14825		26.796	0	1	636380			32201	11235	26496	26521	35524	35524					0.07664264045274649
LLLRAVDI	8	Unmodified	_LLLRAVDI_					0	0	0			REV__ENST00000492368.1_1_10:5924953-5929894:-|nuORF	REV__ENST00000492368.1_1_10:5924953-5929894:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	456.7974548339844	2	456.797478	911.580402	0.29232	0.00013353	-0.61394	-0.00028045	-0.32162	-0.00014691	456.7971214119819	103.69	3.5724	103.12	102.73	106.3	-0.57639					168	71	3	0	0	0	0.62934	1	9642	9642		57.811	0	1	1420000	+		32202	19205	26497	26522	35525	35525					0.12107538690884212
LLLRDQASDP	10	Unmodified	_LLLRDQASDP_					0	0	0			REV__ENST00000510377.5_1_4:144106135-144106210:+|nuORF	REV__ENST00000510377.5_1_4:144106135-144106210:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.324462890625	2	564.306395	1126.59824	1.0618	0.00059917	0.52139	0.00029422	1.5832	0.00089339	564.3061107024437	102.85	0.31491	100.65	100.46	100.78	-2.1994					8	5	2	0	0	0	0.026665	1	9254	9254		51.335	0	1	21350	+		32203	26940	26498	26523	35526	35526					0.04000209155083212
LLLRGDRNVR	10	Unmodified	_LLLRGDRNVR_					0	0	0		ENSG00000105278|ENST00000262961|ZFR2	ENSG00000105278|ENST00000262961|ZFR2	ENSG00000105278|ENST00000262961|ZFR2	MULTI-MSMS	OvCa9_classI_Rep2	2	606.36962890625	2	606.370195	1210.72584	-3.14	-0.001904	2.1543	0.0013063	-0.98567	-0.00059768	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.72319	1	14898	14898		27.882	4.3595	1	257720			32204	2437	26499	26524	35527	35527					0.12890394539772387
LLLRIWFV	8	Unmodified	_LLLRIWFV_					0	0	0			REV__ENST00000477769.1_1_1:111662258-111663219:-|nuORF	REV__ENST00000477769.1_1_1:111662258-111663219:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8209228515625	2	530.339313	1058.66407	-0.24769	-0.00013136	-0.93484	-0.00049578	-1.1825	-0.00062714	530.3384785852041	60.292	0.51969	60.292	60.039	60.559	0					28	12	3	0	0	0	0.028476	1	5260	5260		14.664	3.1531	1	1077400	+		32205	20464	26500	26525	35528	35528					0.13708694858610215
LLLRLPALRS	10	Unmodified	_LLLRLPALRS_					0	0	0		ENST00000483821.1_1_6:33162461-33163032:-|nuORF;nc|ENSG00000186350|P19793-2|RXRA;ENSG00000186350|ENST00000481739|RXRA;ENSG00000143171|ENST00000359842|RXRG;ENSG00000204231|ENST00000374680|RXRB;nc|ENSG00000204231|P28702-3|RXRB	ENST00000483821.1_1_6:33162461-33163032:-|nuORF	ENST00000483821.1_1_6:33162461-33163032:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	575.8517456054688	2	576.384783	1150.75501	0.9777	0.00056353	-3.4842	-0.0020082	-2.5065	-0.0014447	576.3828085433585	87.91	0.2418	86.479	86.335	86.577	-1.4311					8	4	2	0	0	0	0.02717	1	7683	7683		23.523	0	1	16179			32206	5017	26501	26526	35529	35529					0.1856653883605759
LLLRRKLE	8	Unmodified	_LLLRRKLE_					0	0	0			REV__nc|ENSG00000131351|Q9BT25-2|HAUS8	REV__nc|ENSG00000131351|Q9BT25-2|HAUS8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.2713623046875	2	520.850576	1039.6866	-0.48507	-0.00025265	1.6673	0.0008684	1.1822	0.00061576	520.8520834294454	105.45	0.74889	103.43	103.2	103.95	-2.0161					28	14	3	0	0	0	0.028476	1	9612	9612		25.45	0	1	23291	+		32207	19006	26502	26527	35530	35530					0.16834294256227622
LLLRRLRWYLF	11	Unmodified	_LLLRRLRWYLF_					0	0	0			REV__nc|ENSG00000076555|O00763-3|ACACB	REV__nc|ENSG00000076555|O00763-3|ACACB	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.8151245117188	3	516.989034	1547.94527	-0.8934	-0.00046188	-3.3887	-0.0017519	-4.2821	-0.0022138	517.3219328308678	85.742	0.69267	84.251	83.949	84.642	-1.4906					26	13	3	0	0	0	0.026478	1	7399	7399		6.6596	0	1	15025	+		32208	16994	26503	26528	35531	35531					0.19321825498309408
LLLRRRSLL	9	Unmodified	_LLLRRRSLL_					0	0	0			REV__ENST00000432329.6_1_2:208394661-208394763:+|nuORF	REV__ENST00000432329.6_1_2:208394661-208394763:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.2549438476562	2	570.3904	1138.76625	-0.84916	-0.00048435	0.03927	2.2399E-05	-0.80989	-0.00046196	570.3906276957152	36.465	0.31786	36.465	36.257	36.575	0					9	6	2	0	0	0	0.027462	1	1920	1920		14.865	0	1	23302	+		32209	25733	26504	26529	35532	35532					0.20241360930231167
LLLRSPALL	9	Unmodified	_LLLRSPALL_					0	0	0		chr17:44350340-44351037|150|30.02|0.51|5.88|+|2|GRN,GRN|1	chr17:44350340-44351037|150|30.02|0.51|5.88|+|2|GRN,GRN|1	chr17:44350340-44351037|150|30.02|0.51|5.88|+|2|GRN,GRN|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3341064453125	2	498.334227	994.653902	3.0095	0.0014997	-3.4235	-0.001706	-0.41398	-0.0002063	498.33243610568087	134.14	2.7147	132.61	132.05	134.76	-1.5257					123	54	4	0	0	0	0.22621	1	12991	12991		71.877	0.58177	1	1105000			32210	386	26505	26530	35533	35533					0.15636087133384535
LLLRVFTTN	9	Unmodified	_LLLRVFTTN_					0	0	0		ENST00000485646.1_1_13:21714754-21715135:+|nuORF;nc|ENSG00000150459|O00422|SAP18;ENSG00000150459|ENST00000382533|SAP18	ENST00000485646.1_1_13:21714754-21715135:+|nuORF	ENST00000485646.1_1_13:21714754-21715135:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	538.8267822265625	2	538.826766	1075.63898	-0.48403	-0.00026081	-0.63187	-0.00034047	-1.1159	-0.00060128	538.8264089521746	92.869	3.0409	90.907	90.606	93.647	-1.9617					158	60	5	0	0	0	0.28934	1	5988	5988		64.207	7.4862	1	3810900			32211	5507	26506	26531	35534	35534					0.10418595265377917
LLLRYKNL	8	Unmodified	_LLLRYKNL_					0	0	0			REV__nc|ENSG00000063169|Q9NZM4-2|BICRA	REV__nc|ENSG00000063169|Q9NZM4-2|BICRA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.305419921875	2	516.831852	1031.64915	-0.72894	-0.00037674	0.97105	0.00050187	0.24211	0.00012513	516.8322450176552	104.19	1.2075	102.07	101.54	102.74	-2.1192					41	22	3	0	0	0	0.028476	1	9408	9408		42.474	0.078325	1	24282	+		32212	16758	26507	26532	35535	35535					0.1345920299061163
LLLSAIDSV	9	Unmodified	_LLLSAIDSV_					0	0	0		ENST00000537708.1_1_12:6669555-6669804:-|nuORF;ENST00000544630.1_1_12:6669555-6669953:-|nuORF;NOP2|p.E523Gfs*6|1|0.28|ENSG00000111641|chr12:6560319-6560319|T/-|frameshift_variant;nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2	ENST00000537708.1_1_12:6669555-6669804:-|nuORF	ENST00000537708.1_1_12:6669555-6669804:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.2919921875	2	465.778951	929.543348	-0.38003	-0.00017701	-0.12278	-5.7189E-05	-0.50281	-0.0002342	465.77900405583534	101.8	1.0844	99.531	99.208	100.29	-2.2665					36	20	2	0	0	0	0.027462	1	9113	9113		24.203	0	1	36489			32213	2834	26508	26533	35536	35536					0.07575822354465345
LLLSAIDSV	9	Unmodified	_LLLSAIDSV_					0	0	0		ENST00000537708.1_1_12:6669555-6669804:-|nuORF;ENST00000544630.1_1_12:6669555-6669953:-|nuORF;NOP2|p.E523Gfs*6|1|0.28|ENSG00000111641|chr12:6560319-6560319|T/-|frameshift_variant;nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2	ENST00000537708.1_1_12:6669555-6669804:-|nuORF	ENST00000537708.1_1_12:6669555-6669804:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	465.778951	929.543348	-1.0546	-0.00049121	1.0723	0.00049946	0.017707	8.2475E-06	465.7794300845029	100.35	1.0913	99.515	99.261	100.35	-0.83051	0.0036589	0.00037956	NaN	17.365	35	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25379			32214	2834	26508	26533							0.07575822354465345
LLLSAIDSV	9	Unmodified	_LLLSAIDSV_					0	0	0		ENST00000537708.1_1_12:6669555-6669804:-|nuORF;ENST00000544630.1_1_12:6669555-6669953:-|nuORF;NOP2|p.E523Gfs*6|1|0.28|ENSG00000111641|chr12:6560319-6560319|T/-|frameshift_variant;nc|ENSG00000111641|P46087-3|NOP2;nc|ENSG00000111641|P46087-2|NOP2;ENSG00000111641|ENST00000322166|NOP2;nc|ENSG00000111641|P46087-4|NOP2	ENST00000537708.1_1_12:6669555-6669804:-|nuORF	ENST00000537708.1_1_12:6669555-6669804:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	465.778951	929.543348	-0.97236	-0.00045291	0.87179	0.00040606	-0.10057	-4.6843E-05	465.77940828452034	101.09	2.2434	99.488	99.243	101.49	-1.6053	-0.023313	0.00019277	NaN	17.365	53	42	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35119			32215	2834	26508	26533							0.07575822354465345
LLLSAPVPN	9	Unmodified	_LLLSAPVPN_					0	0	0			REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1	REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.281494140625	2	462.28166	922.548768	-1.2451	-0.00057557	1.3698	0.00063325	0.12476	5.7675E-05	462.28204328074327	117.68	1.5222	116.33	116	117.52	-1.3444					50	28	3	0	0	0	0.31747	1	11040	11040		60.972	0.67798	1	199970	+		32216	17129	26509	26534	35537	35537					0.08439545936948889
LLLSARPIL	9	Unmodified	_LLLSARPIL_					0	0	0			REV__ENST00000477680.5_1_7:4829853-4831013:+|nuORF	REV__ENST00000477680.5_1_7:4829853-4831013:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.33331298828125	2	498.334227	994.653902	0.034655	1.727E-05	-0.51496	-0.00025662	-0.48031	-0.00023935	498.3339335091273	123.54	3.2541	123.31	122.99	126.25	-0.23193					175	65	5	0	0	0	0.40667	1	12100	12100		51.335	1.3109	1	3004600	+		32217	26393	26510	26535	35538	35538					0.15636087133384535
LLLSARQNHSP	11	Unmodified	_LLLSARQNHSP_					0	0	0		L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|274|2|anti-sense	L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|274|2|anti-sense	L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|274|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	618.8436279296875	2	618.346386	1234.67822	-4.148	-0.0025649	3.7679	0.0023299	-0.38014	-0.00023506	618.3487225801689	153.15	2.5489	152.18	151.35	153.89	-0.97301					70	52	2	0	0	0	0.71191	1	13163	13163		25.574	0.12388	1	17729			32218	14533	26511	26536	35539	35539					0.0702669554896147
LLLSESGSKTD	11	Unmodified	_LLLSESGSKTD_					0	0	0		nc|ENSG00000169129|Q8N4X5-2|AFAP1L2;ENSG00000169129|ENST00000304129|AFAP1L2;nc|ENSG00000169129|Q8N4X5-4|AFAP1L2	nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.3185424804688	2	575.303518	1148.59248	-0.32362	-0.00018618	3.0293	0.0017428	2.7057	0.0015566	575.3035293063483	60.531	0.75704	60.531	60.314	61.071	0					25	17	2	0	0	0	0.025457	1	5330	5330		29.17	0	1	273030			32219	6979	26512	26537	35540	35540					0.024130658527838023
LLLSILQNA	9	Unmodified	_LLLSILQNA_					0	0	0		ENSG00000066777|ENST00000262215|ARFGEF1	ENSG00000066777|ENST00000262215|ARFGEF1	ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.79559326171875	2	492.808042	983.601532	1.8186	0.00089622	0.25032	0.00012336	2.0689	0.0010196	492.8079922965167	82.078	0.53969	82.078	81.854	82.394	0					27	12	3	0	0	0	0.027462	1	8461	8461		45.952	15.448	1	731190			32220	1359	26513	26538	35541	35541					0.10907503999760593
LLLSLCLPSL	10	Unmodified	_LLLSLCLPSL_					0	0	0			REV__ENST00000495054.1_1_1:149903225-149903459:-|nuORF	REV__ENST00000495054.1_1_1:149903225-149903459:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2400512695312	2	536.327753	1070.64095	2.0542	0.0011017	2.1735	0.0011657	4.2277	0.0022674	536.328885209807	97.029	0.47197	97.029	96.795	97.267	0					17	10	2	0	0	0	0.026462	1	10631	10631		76.774	2.5191	1	374000	+		32221	26738	26514	26539	35542	35542					0.10845887958976164
LLLSLKLQ	8	Unmodified	_LLLSLKLQ_					0	0	0		ENST00000477496.5_1_3:123881713-123881914:+|nuORF	ENST00000477496.5_1_3:123881713-123881914:+|nuORF	ENST00000477496.5_1_3:123881713-123881914:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	464.316650390625	2	464.315503	926.616454	2.5765	0.0011963	-0.31099	-0.0001444	2.2655	0.0010519	464.31521208095984	116.18	0.68488	116.18	115.91	116.6	0					32	14	3	0	0	0	0.55617	1	13281	13281		71.877	2.2498	1	585150			32222	12479	26515	26540	35543	35543					0.15020995867757847
LLLSLRHLG	9	Unmodified	_LLLSLRHLG_					0	0	0			REV__ENSG00000129910|ENST00000289746|CDH15	REV__ENSG00000129910|ENST00000289746|CDH15	MULTI-MSMS	OvCa9_classI_Rep3	3	511.3267517089844	2	511.329476	1020.6444	-5.3559	-0.0027386	0.93899	0.00048013	-4.4169	-0.0022585	511.3298778479252	153.96	1.1884	152.95	152.62	153.81	-1.0076					68	24	4	0	0	0	0.69895	1	13231	13231		18.324	0.95945	1	338570	+		32223	18911	26516	26541	35544	35544					0.13490318847857452
LLLSPRALL	9	Unmodified	_LLLSPRALL_					0	0	0			REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3330993652344	2	498.334227	994.653902	-0.31291	-0.00015594	0.085793	4.2754E-05	-0.22712	-0.00011318	498.334174042398	135.29	1.7167	135.06	134.69	136.4	-0.22696					83	34	4	0	0	0	0.24951	2	13439	13439;13474		68.787	2.9837	1	281670	+		32224	17779	26517	26542	35545;35546	35545					0.15636087133384535
LLLSPRALL	9	Unmodified	_LLLSPRALL_					0	0	0			REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	498.33367919921875	2	498.334227	994.653902	-0.6989	-0.00034829	0.47295	0.00023569	-0.22596	-0.0001126	498.33435878229506	133.81	2.0717	132.69	132.27	134.34	-1.1226					102	41	4	0	0	0	0.21231	1	10749	10749		74.255	0.28031	1	981140	+		32225	17779	26517	26542	35547	35547					0.15636087133384535
LLLSPRALL	9	Unmodified	_LLLSPRALL_					0	0	0			REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	REV__ENST00000478124.5_1_7:30634537-30662079:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.33392333984375	2	498.334227	994.653902	-1.8174	-0.00090567	1.0953	0.00054583	-0.72208	-0.00035984	498.334772441205	125.12	4.2738	123.72	123.39	127.66	-1.3908					210	84	5	0	0	0	0.50149	1	11940	11940		42.396	0	1	4129000	+		32226	17779	26517	26542	35548	35548					0.15636087133384535
LLLSRFLF	8	Unmodified	_LLLSRFLF_					0	0	0			REV__ENST00000405995.5_1_9:134372150-134372429:+|nuORF	REV__ENST00000405995.5_1_9:134372150-134372429:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.7717590332031	2	504.81567	1007.61679	1.2842	0.00064829	-3.4654	-0.0017494	-2.1812	-0.0011011	504.8135476050138	74.509	1.5502	74.509	74.214	75.764	0					63	38	2	0	0	0	0.028476	1	7525	7525		14.664	0	1	1043300	+		32227	25442	26518	26543	35549	35549					0.11328415587627205
LLLSRPEGQ	9	Unmodified	_LLLSRPEGQ_					0	0	0			REV__ENST00000502083.2_1_8:22865326-22865587:-|nuORF	REV__ENST00000502083.2_1_8:22865326-22865587:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	506.7923278808594	2	506.792924	1011.57129	-1.4847	-0.00075246	0.93079	0.00047172	-0.55395	-0.00028074	506.7934294899102	52.807	1.2341	49.993	49.591	50.826	-2.8139					59	24	4	0	0	0	0.63422	1	3552	3552		27.882	1.1893	1	256810	+		32228	26822	26519	26544	35550	35550					0.06597145334581
LLLSSIMKL	9	Unmodified	_LLLSSIMKL_					0	0	0			REV__tr|A0A7D6VWH3|A0A7D6VWH3_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04060PE=4SV=1	REV__tr|A0A7D6VWH3|A0A7D6VWH3_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04060PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	509.3238830566406	2	509.322471	1016.63039	1.6932	0.00086236	-0.46413	-0.00023639	1.229	0.00062597	509.3222483273032	129.75	3.5873	129.75	129.45	133.04	0					127	75	2	0	0	0	0.16524	1	15063	15063		82.305	7.2617	1	9824000	+		32229	31747	26520	26545	35551	35551					0.1227390530456205
LLLSTEGVK	9	Unmodified	_LLLSTEGVK_					0	0	0			REV__nc|ENSG00000126001|Q9BV73-2|CEP250	REV__nc|ENSG00000126001|Q9BV73-2|CEP250	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.7275390625	2	480.292225	958.569897	1.2179	0.00058494	2.3896	0.0011477	3.6075	0.0017327	480.29321260618343	90.98	0.63794	90.98	90.777	91.415	0					18	15	2	0	0	0	0.027418	1	9770	9770		49.442	7.0454	1	289630	+		32230	18766	26521	26546	35552	35552					0.08895511245816579
LLLSTEGVK	9	Unmodified	_LLLSTEGVK_					0	0	0			REV__nc|ENSG00000126001|Q9BV73-2|CEP250	REV__nc|ENSG00000126001|Q9BV73-2|CEP250	MULTI-MATCH	OvCa9_classI_Rep2	2		2	480.292225	958.569897	0.45082	0.00021652	-1.3329	-0.0006402	-0.88212	-0.00042368	480.2914661830984	92.06	1.3133	90.825	90.326	91.639	-1.2355	-0.056121	-0.00043389	NaN	49.442	47	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234010	+		32231	18766	26521	26546							0.08895511245816579
LLLSTEGVK	9	Unmodified	_LLLSTEGVK_					0	0	0			REV__nc|ENSG00000126001|Q9BV73-2|CEP250	REV__nc|ENSG00000126001|Q9BV73-2|CEP250	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	480.292225	958.569897	-0.6372	-0.00030604	-0.59701	-0.00028674	-1.2342	-0.00059278	480.29177417666796	93.345	1.3078	90.838	90.563	91.871	-2.5072	-0.043034	0.00027303	NaN	49.442	40	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	329470	+		32232	18766	26521	26546							0.08895511245816579
LLLSVRQVVEE	11	Unmodified	_LLLSVRQVVEE_					0	0	0			REV__nc|ENSG00000148482|Q504Y0-2|SLC39A12	REV__nc|ENSG00000148482|Q504Y0-2|SLC39A12	MULTI-SECPEP	OvCa9_classI_Rep2	2	642.8453979492188	2	642.879727	1283.7449	-1.5135	-0.00097303	4.2897	0.0027578	2.7762	0.0017847	642.8835227338428	75.924	0.31524	74.07	73.887	74.202	-1.854					8	5	2	0	0	0	0.025806	1	6256	6256		18.262	5.4504	1	7899.5	+		32233	20113	26522	26547	35553	35553					0.11437886320209145
LLLTARSLH	9	Unmodified	_LLLTARSLH_					0	0	0		ENST00000301454.8_1_19:6441086-6441584:-|nuORF	ENST00000301454.8_1_19:6441086-6441584:-|nuORF	ENST00000301454.8_1_19:6441086-6441584:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	512.3193969726562	2	512.319109	1022.62366	2.0679	0.0010594	0.1232	6.3117E-05	2.1911	0.0011226	512.3190052422376	78.266	1.0283	78.266	77.968	78.996	0					55	24	3	0	0	0	0.28934	1	7964	7964		64.207	12.872	1	1026300			32234	10187	26523	26548	35554	35554					0.11325728468182206
LLLTAWLEL	9	Unmodified	_LLLTAWLEL_					0	0	0			REV__ENST00000334256.8_1_3:160233307-160233367:-|nuORF	REV__ENST00000334256.8_1_3:160233307-160233367:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.245849609375	2	536.326068	1070.63758	1.0453	0.00056062	-3.8134	-0.0020452	-2.768	-0.0014846	536.3239995870744	114.54	0.69113	113.49	113.3	114	-1.055					25	13	3	0	0	0	0.027091	1	8495	8495		82.305	28.954	1	32997	+		32235	24561	26524	26549	35555	35555					0.10508961176606135
LLLTAWLEL	9	Unmodified	_LLLTAWLEL_					0	0	0			REV__ENST00000334256.8_1_3:160233307-160233367:-|nuORF	REV__ENST00000334256.8_1_3:160233307-160233367:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	536.326068	1070.63758	2.4905	0.0013357	-3.248	-0.001742	-0.75752	-0.00040628	536.3244884290691	113.38	0.27165	113.38	113.2	113.47	0	-0.12725	-0.00090774	NaN	82.305	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126670	+		32236	24561	26524	26549							0.10508961176606135
LLLTEQETK	9	Unmodified	_LLLTEQETK_					0	0	0			REV__PIGS-SPAG5|1|fusion	REV__PIGS-SPAG5|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	537.8057250976562	2	537.805697	1073.59684	1.6	0.00086048	-0.69017	-0.00037118	0.90981	0.0004893	537.8052358679963	69.946	1.7589	67.226	66.906	68.665	-2.7196					92	34	4	0	0	0	0.50149	1	3152	3152		42.396	0	1	888370	+		32237	16992	26525	26550	35556	35556					0.06298575066330159
LLLTFRLFG	9	Unmodified	_LLLTFRLFG_					0	0	0			REV__ENST00000557699.5_1_14:23818379-23821759:-|nuORF	REV__ENST00000557699.5_1_14:23818379-23821759:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.7650146484375	2	540.334227	1078.6539	-0.74378	-0.00040189	-3.4335	-0.0018552	-4.1773	-0.0022571	540.3322382062979	78.954	0.28294	76.203	75.991	76.274	-2.7514					8	5	2	0	0	0	0.027456	1	6370	6370		47.916	10.756	1	20555	+		32238	27576	26526	26551	35557	35557					0.11772087133385867
LLLTGPPDK	9	Unmodified	_LLLTGPPDK_					0	0	0		chr9:130464167-130476887|355|144.06|0.0|15.18|+|2|ASS1,None|1	chr9:130464167-130476887|355|144.06|0.0|15.18|+|2|ASS1,None|1	chr9:130464167-130476887|355|144.06|0.0|15.18|+|2|ASS1,None|1	MULTI-MSMS	OvCa99_classI_Rep5	1	477.2879638671875	2	477.286943	952.559333	2.0114	0.00096003	0.24551	0.00011718	2.2569	0.0010772	477.2869831243387	134.32	0.93381	134.32	134.06	134.99	0					34	20	3	0	0	0	0.21395	1	15657	15657		73.975	2.5968	1	655720			32239	552	26527	26552	35558	35558					0.08115528591372367
LLLTHTNII	9	Unmodified	_LLLTHTNII_					0	0	0			REV__ENSG00000140575|ENST00000268182|IQGAP1	REV__ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	OvCa9_classI_Rep2	2	519.3201293945312	2	519.321317	1036.62808	-0.025857	-1.3428E-05	-0.77822	-0.00040415	-0.80408	-0.00041757	519.3208981722679	105.56	3.4593	105.12	104.75	108.21	-0.43642					137	69	2	0	0	0	0.055688	1	9813	9813		115.46	9.0438	1	2268600	+		32240	19688	26528	26553	35559	35559					0.11123192891068356
LLLTLLTPIV	10	Unmodified	_LLLTLLTPIV_					0	0	0		nc|ENSG859|P60507|ERVFC1	nc|ENSG859|P60507|ERVFC1	nc|ENSG859|P60507|ERVFC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.7930297851562	2	548.373018	1094.73148	2.444	0.0013402	-2.5537	-0.0014004	-0.10977	-6.0194E-05	548.3714077136884	94.436	0.47046	94.436	94.177	94.648	0					18	10	2	0	0	0	0.026639	1	10277	10277		53.351	0	1	404140			32241	15413	26529	26554	35560	35560					0.18790680278880245
LLLTLPRLT	9	Unmodified	_LLLTLPRLT_					0	0	0		nc|ENSG00000085433|O94967-2|WDR47;ENSG00000085433|ENST00000369962|WDR47;nc|ENSG00000085433|O94967-3|WDR47;nc|ENSG00000085433|O94967-4|WDR47	nc|ENSG00000085433|O94967-2|WDR47	nc|ENSG00000085433|O94967-2|WDR47	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3117065429688	2	520.347335	1038.68012	0.68419	0.00035602	-0.73812	-0.00038408	-0.053931	-2.8063E-05	520.3476382573543	84.743	0.37859	82.08	81.868	82.247	-2.6629					11	7	2	0	0	0	0.027462	1	7117	7117		18.324	0	1	108920			32242	1729	26530	26555	35561	35561					0.16232356304840323
LLLTMAVFK	9	Unmodified	_LLLTMAVFK_					0	0	0			REV__tr|A0A7D6VNE1|A0A7D6VNE1_9CLOTDUF3021familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12530PE=4SV=1	REV__tr|A0A7D6VNE1|A0A7D6VNE1_9CLOTDUF3021familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12530PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.3182983398438	2	518.317189	1034.61982	1.2927	0.00067005	-1.5972	-0.00082788	-0.3045	-0.00015783	518.3163014324844	138.42	1.5254	136.89	136.44	137.96	-1.5284					73	32	3	0	0	0	0.62352	1	13483	13483		29.15	1.2673	1	110380	+		32243	31177	26531	26556	35562	35562					0.10389922650097105
LLLTPQSA	8	Unmodified	_LLLTPQSA_					0	0	0		ENST00000349379.5_1_6:108582105-108582429:-|nuORF	ENST00000349379.5_1_6:108582105-108582429:-|nuORF	ENST00000349379.5_1_6:108582105-108582429:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	421.7510986328125	2	421.752736	841.490919	-1.0072	-0.00042477	-2.0984	-0.00088503	-3.1056	-0.0013098	421.7517371980997	144.77	1.0019	143.33	142.99	143.99	-1.4357					31	18	2	0	0	0	0.7549	1	14196	14196		24.203	0	1	53450			32244	10645	26532	26557	35563	35563					0.06383284011519663
LLLTPQSA	8	Unmodified	_LLLTPQSA_					0	0	0		ENST00000349379.5_1_6:108582105-108582429:-|nuORF	ENST00000349379.5_1_6:108582105-108582429:-|nuORF	ENST00000349379.5_1_6:108582105-108582429:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	421.752736	841.490919	-1.6728	-0.0007055	-1.4618	-0.00061653	-3.1346	-0.001322	421.7520842049355	143.72	1.0361	143.49	143.1	144.14	-0.22696	0.097763	-0.00024272	NaN	24.203	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13998			32245	10645	26532	26557							0.06383284011519663
LLLTPQSA	8	Unmodified	_LLLTPQSA_					0	0	0		ENST00000349379.5_1_6:108582105-108582429:-|nuORF	ENST00000349379.5_1_6:108582105-108582429:-|nuORF	ENST00000349379.5_1_6:108582105-108582429:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	421.752736	841.490919	-2.3594	-0.0009951	-0.36225	-0.00015278	-2.7217	-0.0011479	421.75250026200644	144.33	1.0403	143.36	143.1	144.14	-0.97301	-0.036691	0.00068477	NaN	24.203	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38869			32246	10645	26532	26557							0.06383284011519663
LLLTSAPGP	9	Unmodified	_LLLTSAPGP_					0	0	0			REV__ENST00000375225.7_1_1:19407882-19408122:-|nuORF	REV__ENST00000375225.7_1_1:19407882-19408122:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	434.761962890625	2	434.760561	867.506569	2.2015	0.00095713	0.28549	0.00012412	2.487	0.0010813	434.760561099661	119.89	0.34784	119.89	119.7	120.05	0					11	7	2	0	0	0	0.34496	1	13772	13772		57.811	2.3071	1	66166	+		32247	25084	26533	26558	35564	35564					0.06751570528570028
LLLTSWLNI	9	Unmodified	_LLLTSWLNI_					0	0	0			REV__ENST00000435059.6_1_17:47781399-47785273:-|nuORF	REV__ENST00000435059.6_1_17:47781399-47785273:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.2913208007812	2	536.823692	1071.63283	-0.2085	-0.00011193	-3.2651	-0.0017528	-3.4736	-0.0018647	536.8215798452758	58.773	0.32037	58.773	58.572	58.892	0					11	7	2	0	0	0	0.027462	1	4988	4988		37.159	0	1	273390	+		32248	18529	26534	26559	35565	35565					0.09988077033835907
LLLVAKQPK	9	Unmodified	_LLLVAKQPK_					0	0	0			REV__nc|ENSG00000164398|Q9UKU0-7|ACSL6	REV__nc|ENSG00000164398|Q9UKU0-7|ACSL6	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.3428039550781	2	505.342052	1008.66955	1.0363	0.00052367	-0.45517	-0.00023001	0.58111	0.00029366	505.3418962874315	139.15	0.72646	137.62	137.29	138.01	-1.5284					26	13	2	0	0	0	0.53957	1	13557	13557		38.806	6.8513	1	48709	+		32249	20984	26535	26560	35566	35566					0.16556373650416845
LLLVAKQPK	9	Unmodified	_LLLVAKQPK_					0	0	0			REV__nc|ENSG00000164398|Q9UKU0-7|ACSL6	REV__nc|ENSG00000164398|Q9UKU0-7|ACSL6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	505.342052	1008.66955	-2.1305	-0.0010766	1.7191	0.00086873	-0.4114	-0.0002079	505.3439231420045	138.74	0.64151	137.68	137.34	137.98	-1.0595	0.030536	0.0017776	NaN	38.806	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15543	+		32250	20984	26535	26560							0.16556373650416845
LLLVDTLLI	9	Unmodified	_LLLVDTLLI_					0	0	0			REV__nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	REV__nc|ENSG00000104880|Q6ZSZ5-2|ARHGEF18	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.8114318847656	2	506.836268	1011.65798	-1.2733	-0.00064537	-3.8754	-0.0019642	-5.1487	-0.0026095	506.8337614454826	100.66	0.34393	99.057	98.85	99.194	-1.6053					9	6	2	0	0	0	0.02705	1	6826	6826		92.191	15.344	1	12967	+		32251	17689	26536	26561	35567	35567					0.15262131836448134
LLLVKIKNL	9	Unmodified	_LLLVKIKNL_					0	0	0			REV__tr|A0A553SS03|A0A553SS03_NIACIMMPLfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_02030PE=4SV=1	REV__tr|A0A553SS03|A0A553SS03_NIACIMMPLfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_02030PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	527.354248046875	2	527.373352	1052.73215	-0.88361	-0.00046599	3.2448	0.0017112	2.3612	0.0012452	527.3757130090399	83.775	0.50932	82.208	81.953	82.462	-1.5668					15	9	2	0	0	0	0.027462	1	7186	7186		50.025	0	1	10850	+		32252	30785	26537	26562	35568	35568					0.20789519718618976
LLLVSAVASHL	11	Unmodified	_LLLVSAVASHL_					0	0	0			REV__ENST00000544451.2_1_8:52811561-52811630:-|nuORF	REV__ENST00000544451.2_1_8:52811561-52811630:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	561.844970703125	2	561.847699	1121.68084	-3.2197	-0.001809	-0.49496	-0.00027809	-3.7146	-0.002087	561.8472802195274	152.47	1.17	152.24	151.83	153	-0.22697					70	23	4	0	0	0	0.72466	1	15482	15482		19.997	0.6368	1	142980	+		32253	27397	26538	26563	35569	35569					0.12487150953893433
LLLVSFAVAF	10	Unmodified	_LLLVSFAVAF_					0	0	0			REV__ENST00000495425.6_1_17:19458825-19480863:+|nuORF	REV__ENST00000495425.6_1_17:19458825-19480863:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3305053710938	2	540.328611	1078.64267	-1.2676	-0.00068491	4.0333	0.0021793	2.7657	0.0014944	540.3307152267141	139.22	4.0818	138.16	137	141.08	-1.0595					200	82	3	0	0	0	0.75594	1	11491	11491		24.203	0	1	55828	+		32254	19787	26539	26564	35570	35570					0.1064926503922834
LLLVSMEFR	9	Unmodified	_LLLVSMEFR_					0	0	0		tr|A0A553SMW5|A0A553SMW5_NIACIPhosphatidylglycerollysyltransferaseOS=NialliacirculansOX=1397GN=mprFPE=3SV=1	tr|A0A553SMW5|A0A553SMW5_NIACIPhosphatidylglycerollysyltransferaseOS=NialliacirculansOX=1397GN=mprFPE=3SV=1	tr|A0A553SMW5|A0A553SMW5_NIACIPhosphatidylglycerollysyltransferaseOS=NialliacirculansOX=1397GN=mprFPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	554.3153686523438	2	554.315177	1106.6158	1.6845	0.00093374	-2.8737	-0.0015929	-1.1892	-0.00065917	554.3135221670186	127.5	0.53419	127.5	127.23	127.76	0					21	11	2	0	0	0	0.14998	1	14761	14761		84.916	10.66	1	442290			32255	33877	26540	26565	35571	35571					0.06675833156396038
LLLWAHLAV	9	Unmodified	_LLLWAHLAV_					0	0	0		nc|ENSG00000289762|P0DQW1|SMIM46;ENST00000536649.5_1_19:14223138-14223288:-|nuORF	nc|ENSG00000289762|P0DQW1|SMIM46	nc|ENSG00000289762|P0DQW1|SMIM46	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.2958374023438	2	518.32112	1034.62769	-0.85752	-0.00044447	-3.2616	-0.0016906	-4.1191	-0.002135	518.8221153808279	93.383	0.29794	91.421	91.228	91.526	-1.9617					9	5	2	0	0	0	0.027462	1	5968	5968		21.702	0	1	32951			32256	13392	26541	26566	35572	35572					0.11175817961884604
LLLWALAPL	9	Unmodified	_LLLWALAPL_					0	0	0			REV__ENSG00000224940|ENST00000446477|PRRT4	REV__ENSG00000224940|ENST00000446477|PRRT4	MULTI-MSMS	OvCa99_classI_Rep5	1	505.3241271972656	2	505.325871	1008.63719	1.1025	0.00055713	-3.2488	-0.0016417	-2.1462	-0.0010846	505.3243061330375	131.36	1.9789	131.36	130.96	132.94	0					126	41	6	0	0	0	0.088217	3	15249	15237;15249;15273		100.36	14.451	1	7266300	+		32257	23360	26542	26567	35573;35574;35575	35574					0.1332158624740032
LLLWALAPL	9	Unmodified	_LLLWALAPL_					0	0	0			REV__ENSG00000224940|ENST00000446477|PRRT4	REV__ENSG00000224940|ENST00000446477|PRRT4	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.8270568847656	2	505.325871	1008.63719	1.1025	0.00055713	-3.2488	-0.0016417	-2.1462	-0.0010846	505.3243061330375	131.36	1.9789	131.36	130.96	132.94	0					126	41	6	0	0	0	0.027412	1	15237	15237		72.62	12.216	1	7266300	+		32258	23360	26542	26567	35576	35576					0.1332158624740032
LLLWALAPL	9	Unmodified	_LLLWALAPL_					0	0	0			REV__ENSG00000224940|ENST00000446477|PRRT4	REV__ENSG00000224940|ENST00000446477|PRRT4	MULTI-MSMS	OvCa9_classI_Rep2	2	505.3216552734375	2	505.325871	1008.63719	0.014871	7.5146E-06	-4.2306	-0.0021378	-4.2157	-0.0021303	505.3237024434363	132.38	1.7261	132.15	131.83	133.56	-0.22696					82	34	4	0	0	0	0.32242	5	13057	13057;13062;13075;13087;13093		60.404	11.193	1	382540	+		32259	23360	26542	26567	35577;35578;35579;35580;35581	35577					0.1332158624740032
LLLWALAPL	9	Unmodified	_LLLWALAPL_					0	0	0			REV__ENSG00000224940|ENST00000446477|PRRT4	REV__ENSG00000224940|ENST00000446477|PRRT4	MULTI-MSMS	OvCa9_classI_Rep3	3	505.3210754394531	2	505.325871	1008.63719	-0.92096	-0.00046539	-3.2041	-0.0016191	-4.1251	-0.0020845	505.324146903525	133.57	1.7735	132.45	132.07	133.85	-1.1247					81	35	4	0	0	0	0.32242	1	10739	10739		60.404	10.379	1	225280	+		32260	23360	26542	26567	35582	35582					0.1332158624740032
LLLWLEQNL	9	Unmodified	_LLLWLEQNL_					0	0	0		nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1;CNGB1|p.K175Qfs*4|1|0.13|ENSG00000070729|chr16:57960851-57960852|-/G|frameshift_variant;nc|ENSG00000070729|Q14028-3|CNGB1	nc|ENSG00000070729|Q14028-4|CNGB1	nc|ENSG00000070729|Q14028-4|CNGB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.2928466796875	2	571.334424	1140.6543	1.2632	0.00072169	-4.1338	-0.0023618	-2.8706	-0.0016401	571.3322346229475	123.2	1.1127	123.2	122.54	123.65	0					46	23	3	0	0	0	0.027462	1	14138	14138		37.028	12.509	1	325060			32261	1432	26543	26568	35583	35583					0.08959462062580315
LLLWLKPI	8	Unmodified	_LLLWLKPI_					0	0	0		tr|A0A553SPH0|A0A553SPH0_NIACIMembraneproteinYkvIOS=NialliacirculansOX=1397GN=CEQ21_26370PE=4SV=1	tr|A0A553SPH0|A0A553SPH0_NIACIMembraneproteinYkvIOS=NialliacirculansOX=1397GN=CEQ21_26370PE=4SV=1	tr|A0A553SPH0|A0A553SPH0_NIACIMembraneproteinYkvIOS=NialliacirculansOX=1397GN=CEQ21_26370PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3345642089844	2	498.336239	994.657924	-1.8174	-0.00090567	-2.9409	-0.0014655	-4.7582	-0.0023712	498.334772441205	125.12	4.2738	123.72	123.39	127.66	-1.3908					210	84	5	0	0	0	0.67106	1	11904	11904		49.211	1.5535	1	4129000			32262	34044	26544	26569	35584	35584					0.16038176627080247
LLLWLLSY	8	Unmodified	_LLLWLLSY_					0	0	0		ENSG00000281991|ENST00000615541|TMEM265	ENSG00000281991|ENST00000615541|TMEM265	ENSG00000281991|ENST00000615541|TMEM265	MULTI-MSMS	OvCa9_classI_Rep2	2	510.80731201171875	2	510.810054	1019.60555	-0.66848	-0.00034146	-3.9367	-0.0020109	-4.6052	-0.0023524	510.8080315850244	98.975	2.1364	98.081	97.459	99.595	-0.89305					130	42	4	0	0	0	0.36238	1	9045	9045		95.378	13.137	1	3909300			32263	9604	26545	26570	35585	35585					0.09653593493476365
LLLWTISL	8	Unmodified	_LLLWTISL_					0	0	0			REV__nc|ENSG00000158220|A0FGR9-2|ESYT3	REV__nc|ENSG00000158220|A0FGR9-2|ESYT3	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.7679748535156	2	479.802229	957.589904	-0.51328	-0.00024627	-3.6291	-0.0017413	-4.1424	-0.0019875	479.80039532189465	33.83	0.28799	33.83	33.681	33.969	0					8	5	2	0	0	0	0.028476	1	1567	1567		19.36	0	1	15248	+		32264	20558	26546	26571	35586	35586					0.10941306976428677
LLLWTPLP	8	Unmodified	_LLLWTPLP_					0	0	0		ENSG00000198888|ENST00000361390|MT-ND1	ENSG00000198888|ENST00000361390|MT-ND1	ENSG00000198888|ENST00000361390|MT-ND1	MULTI-SECPEP	OvCa9_classI_Rep3	3	476.22186279296875	2	476.796946	951.57934	0.18907	9.0148E-05	-4.356	-0.0020769	-4.1669	-0.0019868	476.79464392220433	116.04	1.2349	115	114.7	115.93	-1.0414					56	24	4	0	0	0	0.028476	1	8756	8756		28.254	8.8943	1	180160			32265	8901	26547	26572	35587	35587					0.10161324321984466
LLLYAYNL	8	Unmodified	_LLLYAYNL_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.2966613769531	2	491.784036	981.553519	0.51128	0.00025144	-3.0444	-0.0014972	-2.5331	-0.0012457	491.78291116313164	97.81	0.49329	96.851	96.513	97.006	-0.95857					10	9	2	0	0	0	0.028476	1	8869	8869		54.765	0	1	5010.2			32266	8482	26548	26573	35588	35588					0.062004300797070755
LLLYGPFGF	9	Unmodified	_LLLYGPFGF_					0	0	0			REV__nc|ENSG00000169507|Q08AI6-2|SLC38A11	REV__nc|ENSG00000169507|Q08AI6-2|SLC38A11	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.3048706054688	2	513.786579	1025.5586	-1.1648	-0.00059845	-1.8828	-0.00096736	-3.0476	-0.0015658	513.7855443561012	120.23	1.0807	118.89	118.67	119.75	-1.3444					38	20	2	0	0	0	0.02744	1	11292	11292		39.021	10.767	1	65410	+		32267	21466	26549	26574	35589	35589					0.04684733942326602
LLLYGPFGF	9	Unmodified	_LLLYGPFGF_					0	0	0			REV__nc|ENSG00000169507|Q08AI6-2|SLC38A11	REV__nc|ENSG00000169507|Q08AI6-2|SLC38A11	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	513.786579	1025.5586	1.145	0.00058829	-3.0211	-0.0015522	-1.8761	-0.00096391	513.7848183585534	119.36	0.68877	119.36	119.05	119.74	0	0.26845	-7.3168E-05	NaN	29.842	39	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	884990	+		32268	21466	26549	26574							0.04684733942326602
LLLYGPFGF	9	Unmodified	_LLLYGPFGF_					0	0	0			REV__nc|ENSG00000169507|Q08AI6-2|SLC38A11	REV__nc|ENSG00000169507|Q08AI6-2|SLC38A11	MULTI-MATCH	OvCa9_classI_Rep2	2		2	513.786579	1025.5586	-1.4727	-0.00075664	-0.45252	-0.0002325	-1.9252	-0.00098913	513.785624088064	119.34	1.3299	119.17	118.86	120.19	-0.17138	0.077408	0.0025662	NaN	29.842	56	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42213	+		32269	21466	26549	26574							0.04684733942326602
LLLYKGGK	8	Unmodified	_LLLYKGGK_					0	0	0		tr|A0A553SNK0|A0A553SNK0_NIACIUPF0344proteinCEQ21_24640OS=NialliacirculansOX=1397GN=CEQ21_24640PE=3SV=1	tr|A0A553SNK0|A0A553SNK0_NIACIUPF0344proteinCEQ21_24640OS=NialliacirculansOX=1397GN=CEQ21_24640PE=3SV=1	tr|A0A553SNK0|A0A553SNK0_NIACIUPF0344proteinCEQ21_24640OS=NialliacirculansOX=1397GN=CEQ21_24640PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	445.7594909667969	2	446.286746	890.558939	-0.75425	-0.00033661	0.82146	0.00036661	0.067215	2.9997E-05	446.2869841424327	82.893	0.94038	80.597	80.235	81.176	-2.2963					31	18	2	0	0	0	0.028476	1	4735	4735		25.45	4.9683	1	37038			32270	33931	26550	26575	35590	35590					0.10928153662189288
LLLYLFILY	9	Unmodified	_LLLYLFILY_					0	0	0		ENST00000523744.2_2_8:17924585-17924894:-|nuORF	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	ENST00000523744.2_2_8:17924585-17924894:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.8141479492188	2	585.862286	1169.71002	0.8329	0.00048796	-0.91689	-0.00053717	-0.083997	-4.9211E-05	585.861587985328	131.62	0.18677	131.62	131.48	131.67	0					5	3	2	0	0	0	0.027462	1	15285	15285		49.211	0	1	45180			32271	13154	26551	26576	35591	35591					0.13195295250170602
LLLYPFPAMEL	11	Unmodified	_LLLYPFPAMEL_					0	0	0			REV__ENST00000426083.5_1_2:39681444-39743645:+|nuORF	REV__ENST00000426083.5_1_2:39681444-39743645:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.2412109375	3	436.242037	1305.70428	0.22667	9.8884E-05	-2.6591	-0.00116	-2.4324	-0.0010611	436.24089196043764	21.376	1.5844	20.038	19.646	21.231	-1.3386					77	31	3	0	0	0	0.71321	1	163	163		25.126	0.89417	1	808510	+		32272	25662	26552	26577	35592	35592					0.06365828676189267
LLMAAFLF	8	Unmodified	_LLMAAFLF_					0	0	0			REV__tr|A0A553SFP5|A0A553SFP5_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_09280PE=3SV=1	REV__tr|A0A553SFP5|A0A553SFP5_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_09280PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.7798156738281	2	463.264425	924.514297	-0.13259	-6.1424E-05	3.0497	0.0014128	2.9171	0.0013514	463.2657348247989	112.64	1.2938	111.13	110.79	112.08	-1.5111					43	25	2	0	0	0	0.028476	1	10444	10444		24.504	0	1	43635	+		32273	29601	26553	26578	35593	35593					0.04902006524491753
LLMALCCSL	9	Carbamidomethyl (C)	_LLMALC(Carbamidomethyl (C))CSL_	LLMALC(0.5)C(0.5)SL		LLMALC(0)C(0)SL		0	1	0			REV__PKDREJ|p.H2048Tfs*3|1|0.05|ENSG00000130943|chr22:46257182-46257182|A/-|frameshift_variant	REV__PKDREJ|p.H2048Tfs*3|1|0.05|ENSG00000130943|chr22:46257182-46257182|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.2542724609375	2	512.255417	1022.49628	-0.66624	-0.00034129	-3.5277	-0.0018071	-4.194	-0.0021484	512.253528475125	87.1	2.3549	84.473	83.957	86.312	-2.6269					166	46	5	0	0	0	0.42057	1	7473	7473		50.025	8.5979	2	2034900	+		32274	18984	26554	26579	35594	35594	207;208				-0.01406819784176605
LLMAVGAVR	9	Unmodified	_LLMAVGAVR_					0	0	0		nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000504717.1_1_22:50941822-50943237:-|nuORF;nc|ENSG00000100258|Q9BU23-3|LMF2	nc|ENSG00000100258|Q9BU23-2|LMF2	nc|ENSG00000100258|Q9BU23-2|LMF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.2868347167969	2	465.28368	928.552807	1.4861	0.00069147	2.7197	0.0012654	4.2058	0.0019569	465.28490580371215	138.56	1.1696	137.03	136.79	137.96	-1.5284					44	23	3	0	0	0	0.64339	1	13498	13498		26.796	0	1	68502			32275	2035	26555	26580	35595	35595					0.08567312159016183
LLMAVRQDL	9	Unmodified	_LLMAVRQDL_					0	0	0		ENSG00000182308|ENST00000333141|DCAF4L1	ENSG00000182308|ENST00000333141|DCAF4L1	ENSG00000182308|ENST00000333141|DCAF4L1	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.8112182617188	2	529.804977	1057.5954	-0.052399	-2.7761E-05	-0.39718	-0.00021043	-0.44958	-0.00023819	529.8048718755886	71.239	0.73592	68.731	68.541	69.277	-2.5071					28	13	3	0	0	0	0.027462	1	5719	5719		31.955	7.7521	1	101720			32276	7990	26556	26581	35596	35596					0.0689066249658481
LLMFLYKM	8	Unmodified	_LLMFLYKM_					0	0	0			REV__ENSG00000218819|ENST00000405799|TDRD15	REV__ENSG00000218819|ENST00000405799|TDRD15	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.2838134765625	2	529.792492	1057.57043	-3.1411	-0.0016641	3.2191	0.0017054	0.077972	4.1309E-05	529.7953876526085	88.436	1.0569	85.833	85.079	86.136	-2.6027					26	20	2	0	0	0	0.028476	1	7576	7576		33.516	0	1	32255	+		32277	23329	26557	26582	35597	35597					0.043948913696567615
LLMIFSHQL	9	Unmodified	_LLMIFSHQL_					0	0	0		nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1	nc|ENSG00000118007|Q8WVM7-2|STAG1	nc|ENSG00000118007|Q8WVM7-2|STAG1	MULTI-MSMS	OvCa99_classI_Rep5	1	551.8116455078125	2	551.309895	1100.60524	0.72309	0.00039865	0.771	0.00042506	1.4941	0.00082371	551.3103536013903	124.17	0.87	124.17	123.87	124.74	0					30	18	2	0	0	0	0.053172	1	14326	14326		116.9	0	1	310080			32278	3285	26558	26583	35598	35598					0.05895850501951827
LLMIRDSL	8	Unmodified	_LLMIRDSL_					0	0	0		tr|A0A7D6VX91|A0A7D6VX91_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07570PE=4SV=1	tr|A0A7D6VX91|A0A7D6VX91_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07570PE=4SV=1	tr|A0A7D6VX91|A0A7D6VX91_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07570PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.782470703125	2	480.78097	959.547388	-1.2168	-0.000585	3.8358	0.0018442	2.619	0.0012592	480.7827433979708	48.737	2.1296	45.629	45.296	47.426	-3.1077					105	40	4	0	0	0	0.64377	1	2701	2701		54.765	7.9982	1	2698300			32279	35269	26559	26584	35599	35599					0.06599588576523274
LLMISVLFV	9	Unmodified	_LLMISVLFV_					0	0	0			REV__ENSG00000221855|ENST00000408916|TAS2R41	REV__ENSG00000221855|ENST00000408916|TAS2R41	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.8195190429688	2	517.819564	1033.62458	-1.9356	-0.0010023	1.533	0.0007938	-0.40262	-0.00020848	517.8202333199824	147.34	1.4932	145.91	145.48	146.98	-1.435					65	29	3	0	0	0	0.64339	1	14506	14506		26.796	0.10319	1	151000	+		32280	23343	26560	26585	35600	35600					0.10910806792867334
LLMITPVIL	9	Unmodified	_LLMITPVIL_					0	0	0			REV__ENSG00000198886|ENST00000361381|MT-ND4	REV__ENSG00000198886|ENST00000361381|MT-ND4	MULTI-MSMS	OvCa99_classI_Rep5	1	506.8302001953125	2	506.827389	1011.64023	1.989	0.0010081	3.7713	0.0019114	5.7603	0.0029195	506.8291826861078	113.65	1.0898	113.65	113.38	114.47	0					62	25	4	0	0	0	0.13154	2	12962	12938;12962		88.643	6.6186	1	5550400	+		32281	23086	26561	26586	35601;35602	35602					0.13487093309925058
LLMKPDGR	8	Unmodified	_LLMKPDGR_					0	0	0		nc|ENSG00000145476|Q6ZWL3-2|CYP4V2;ENSG00000145476|ENST00000378802|CYP4V2	nc|ENSG00000145476|Q6ZWL3-2|CYP4V2	nc|ENSG00000145476|Q6ZWL3-2|CYP4V2	MULTI-SECPEP	OvCa9_classI_Rep3	3	465.28643798828125	2	465.265487	928.516422	1.3843	0.00064405	0.87768	0.00040835	2.2619	0.0010524	465.2660224113405	125.86	0.14938	124.81	124.68	124.83	-1.0519					4	2	2	0	0	0	0.028476	1	9796	9796		26.796	1.3459	1	7287.9			32282	5226	26562	26587	35603	35603					0.04930435262303945
LLMLEACSIL	10	Unmodified	_LLMLEACSIL_					0	0	0			REV__ENST00000554614.2_1_14:73711596-73711647:-|nuORF	REV__ENST00000554614.2_1_14:73711596-73711647:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.8377075195312	2	553.303421	1104.59229	1.8683	0.0010338	4.4415	0.0024575	6.3099	0.0034913	553.3061317342283	108.76	0.86812	108.76	108.28	109.15	0					33	19	2	0	0	0	0.026582	1	12248	12248		51.335	0	1	200180	+		32283	27530	26563	26588	35604	35604					0.04417651327571548
LLMLITLL	8	Unmodified	_LLMLITLL_					0	0	0			REV__tr|A0A7D6VXR5|A0A7D6VXR5_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_09785PE=3SV=1	REV__tr|A0A7D6VXR5|A0A7D6VXR5_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_09785PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	465.28643798828125	2	465.308832	928.603112	1.3683	0.00063667	-2.1185	-0.00098576	-0.75024	-0.00034909	465.3078913493022	125.96	0.30535	124.91	124.68	124.99	-1.0519					9	5	2	0	0	0	0.028476	1	9796	9796		29.842	1.5873	1	25933	+		32284	31787	26564	26589	35605	35605					0.1359542176415971
LLMLPSNSH	9	Unmodified	_LLMLPSNSH_					0	0	0		ENST00000546093.5_1_16:86585831-86588279:-|nuORF	ENST00000546093.5_1_16:86585831-86588279:-|nuORF	ENST00000546093.5_1_16:86585831-86588279:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.8110046386719	2	506.268227	1010.5219	-1.4855	-0.00075206	-1.6956	-0.00085843	-3.1811	-0.0016105	506.7702679558872	101.13	0.73242	99.529	99.344	100.08	-1.6053					27	13	3	0	0	0	0.027448	1	6896	6896		53.351	9.2347	1	14253			32285	13529	26565	26590	35606	35606					0.01706114054104546
LLMLPSNSH	9	Unmodified	_LLMLPSNSH_					0	0	0		ENST00000546093.5_1_16:86585831-86588279:-|nuORF	ENST00000546093.5_1_16:86585831-86588279:-|nuORF	ENST00000546093.5_1_16:86585831-86588279:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.8106994628906	2	506.268227	1010.5219	-0.65924	-0.00033375	-2.5511	-0.0012915	-3.2103	-0.0016253	506.7694564207549	101.81	0.81569	99.544	99.16	99.976	-2.2665					38	15	5	0	0	0	0.027426	1	9128	9128		56.721	12.604	1	14314			32286	13529	26565	26590	35607	35607					0.01706114054104546
LLMLRGKDL	9	Unmodified	_LLMLRGKDL_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1;REV__nc|ENSG00000127603|O94854|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.825439453125	2	529.823169	1057.63179	1.0185	0.00053961	-0.32111	-0.00017013	0.69737	0.00036948	529.8228960607835	150.49	2.2581	150.49	150.14	152.4	0					127	45	5	0	0	0	0.2077	1	17647	17647		75.043	8.614	1	1624000	+		32287	18823;28838	26566	26591	35608	35608					0.10527539393297047
LLMPISIKLN	10	Unmodified	_LLMPISIKLN_					0	0	0			REV__ENSG00000214013|ENST00000318010|GANC	REV__ENSG00000214013|ENST00000318010|GANC	MULTI-MSMS	OvCa99_classI_Rep5	1	571.3547973632812	2	571.354302	1140.69405	-0.44426	-0.00025383	3.4626	0.0019784	3.0184	0.0017246	571.3561151163607	42.731	0.81696	42.731	42.453	43.27	0					46	18	4	0	0	0	0.18827	1	2771	2771		96.19	8.4361	1	1688500	+		32288	23281	26567	26592	35609	35609					0.12933265741639843
LLMPLLSHR	9	Oxidation (M)	_LLM(Oxidation (M))PLLSHR_		LLM(1)PLLSHR		LLM(71)PLLSHR	0	0	1		ENST00000371602.8_1_20:49510028-49510064:-|nuORF	ENST00000371602.8_1_20:49510028-49510064:-|nuORF	ENST00000371602.8_1_20:49510028-49510064:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	548.3185424804688	2	548.320794	1094.62703	-0.77794	-0.00042656	0.40009	0.00021938	-0.37785	-0.00020718	548.3209152407421	39.625	0.63897	39.625	39.332	39.971	0					33	14	3	0	0	0	0.22961	1	2342	2342		71.296	23.638	1	454590			32289	10962	26568	26593	35610	35610		312			0.08350655250524142
LLMPTKKLN	9	Oxidation (M)	_LLM(Oxidation (M))PTKKLN_		LLM(1)PTKKLN		LLM(55)PTKKLN	0	0	1		ENSG00000179387|ENST00000323570|ELMOD2	ENSG00000179387|ENST00000323570|ELMOD2	ENSG00000179387|ENST00000323570|ELMOD2	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.3223266601562	2	537.323002	1072.63145	-1.6118	-0.00086606	-1.8902	-0.0010157	-3.502	-0.0018817	537.3218163463066	120.7	1.3813	119.35	119.08	120.46	-1.3479					59	26	3	0	0	0	0.37135	1	11344	11344		54.776	7.119	1	254890			32290	7819	26569	26594	35611	35611		234			0.09804119673458445
LLMRNKPNDVL	11	Unmodified	_LLMRNKPNDVL_					0	0	0			REV__ENSG00000132470|ENST00000200181|ITGB4	REV__ENSG00000132470|ENST00000200181|ITGB4	MULTI-MSMS	OvCa99_classI_Rep5	1	438.25360107421875	3	438.251707	1311.73329	0.73158	0.00032062	1.7478	0.00076597	2.4794	0.0010866	438.2525142604776	42.876	1.1114	42.876	42.583	43.694	0					71	25	5	0	0	0	0.52474	1	2809	2809		51.528	11.512	1	4734000	+		32291	19082	26570	26595	35612	35612					0.08989366025207346
LLMRNKPNDVL	11	Unmodified	_LLMRNKPNDVL_					0	0	0			REV__ENSG00000132470|ENST00000200181|ITGB4	REV__ENSG00000132470|ENST00000200181|ITGB4	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	438.251707	1311.73329	0.73158	0.00032062	1.7478	0.00076597	2.4794	0.0010866	438.2525142604776	42.876	1.1114	42.876	42.583	43.694	0	0	0	NaN	51.528	71	25	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4734000	+		32292	19082	26570	26595							0.08989366025207346
LLMSMFALL	9	Unmodified	_LLMSMFALL_					0	0	0		ENST00000452398.5_1_3:19388190-19491848:+|nuORF;KCNH8|p.G378Efs*11|1|0.04|ENSG00000183960|chr3:19395266-19395266|G/-|frameshift_variant;ENSG00000183960|ENST00000328405|KCNH8	ENST00000452398.5_1_3:19388190-19491848:+|nuORF	ENST00000452398.5_1_3:19388190-19491848:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.31005859375	2	519.789949	1037.56535	-0.37801	-0.00019648	-3.0288	-0.0015744	-3.4069	-0.0017708	519.7896180134079	78.901	0.42679	76.15	75.991	76.418	-2.7514					11	8	2	0	0	0	0.027462	1	6398	6398		18.324	0	1	23844			32293	8125	26571	26596	35613	35613					0.04806587507050608
LLMTPRAAP	9	Unmodified	_LLMTPRAAP_					0	0	0		ENSG00000113141|ENST00000417647|IK;ENST00000434096.1_1_2:58688403-58689123:-|nuORF	ENSG00000113141|ENST00000417647|IK	ENSG00000113141|ENST00000417647|IK	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.27447509765625	2	485.281137	968.547722	-0.074897	-3.6346E-05	-0.4902	-0.00023788	-0.56509	-0.00027423	485.2808569123818	78.859	1.0379	76.108	75.853	76.891	-2.7514					32	21	2	0	0	0	0.027462	1	6359	6359		27.882	0	1	125790			32294	2950	26572	26597	35614	35614					0.06219008296386619
LLMTVAGLKLL	11	Unmodified	_LLMTVAGLKLL_					0	0	0		nc|ENSG00000197136|Q9H6A9-3|PCNX3;ENST00000439247.2_1_11:65394334-65404446:+|nuORF;ENSG00000197136|ENST00000355703|PCNX3	nc|ENSG00000197136|Q9H6A9-3|PCNX3	nc|ENSG00000197136|Q9H6A9-3|PCNX3	MULTI-MSMS	OvCa99_classI_Rep5	1	586.3802490234375	2	586.377778	1170.741	0.27539	0.00016148	-0.099593	-5.8399E-05	0.17579	0.00010308	586.377547850614	161.87	1.2169	161.87	161.26	162.48	0					63	23	3	0	0	0	0.31264	1	18967	18967		67.494	12.717	1	183130			32295	8681	26573	26598	35615	35615					0.1624612529276419
LLNAISGVDP	10	Unmodified	_LLNAISGVDP_					0	0	0		tr|A0A553SGL5|A0A553SGL5_NIACIGlutamyl-tRNA(Gln)amidotransferasesubunitAOS=NialliacirculansOX=1397GN=gatAPE=3SV=1	tr|A0A553SGL5|A0A553SGL5_NIACIGlutamyl-tRNA(Gln)amidotransferasesubunitAOS=NialliacirculansOX=1397GN=gatAPE=3SV=1	tr|A0A553SGL5|A0A553SGL5_NIACIGlutamyl-tRNA(Gln)amidotransferasesubunitAOS=NialliacirculansOX=1397GN=gatAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.2921142578125	2	499.779482	997.544411	-0.77835	-0.000389	0.02946	1.4724E-05	-0.74889	-0.00037428	499.7792980782153	66.269	0.50755	66.269	65.984	66.491	0					21	12	3	0	0	0	0.026681	1	6161	6161		62.107	16.155	1	554450			32296	33172	26574	26599	35616	35616					0.04554036723379795
LLNAPIRNA	9	Unmodified	_LLNAPIRNA_					0	0	0			REV__DLGAP1-GNAS|19|fusion	REV__DLGAP1-GNAS|19|fusion	MULTI-SECPEP	OvCa9_classI_Rep3	3	492.2893371582031	2	491.295633	980.576714	1.1482	0.00056409	2.4094	0.0011837	3.5575	0.0017478	491.2964849249238	112.9	0.63966	111.83	111.37	112.01	-1.0753					16	12	2	0	0	0	0.027456	1	8270	8270		38.806	5.2906	1	16427	+		32297	16305	26575	26600	35617	35617					0.08564868917028434
LLNDALRTQL	10	Unmodified	_LLNDALRTQL_					0	0	0		tr|A0A7D6VSQ2|A0A7D6VSQ2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17640PE=4SV=1	tr|A0A7D6VSQ2|A0A7D6VSQ2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17640PE=4SV=1	tr|A0A7D6VSQ2|A0A7D6VSQ2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17640PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	579.31005859375	2	578.837862	1155.66117	-1.0928	-0.00063254	0.47118	0.00027274	-0.6216	-0.00035981	578.8379929243818	98.975	0.59751	98.081	97.857	98.454	-0.89305					18	11	2	0	0	0	0.026714	1	8986	8986		51.193	0	1	28386			32298	35047	26576	26601	35618	35618					0.08956774943135315
LLNDALRTQL	10	Unmodified	_LLNDALRTQL_					0	0	0		tr|A0A7D6VSQ2|A0A7D6VSQ2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17640PE=4SV=1	tr|A0A7D6VSQ2|A0A7D6VSQ2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17640PE=4SV=1	tr|A0A7D6VSQ2|A0A7D6VSQ2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17640PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	578.837862	1155.66117	1.9126	0.0011071	-4.9263	-0.0028516	-3.0137	-0.0017445	578.8353489829481	98.006	0.16714	98.006	97.912	98.079	0	-0.14564	-0.0055166	NaN	51.193	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145360			32299	35047	26576	26601							0.08956774943135315
LLNDIYDEL	9	Unmodified	_LLNDIYDEL_					0	0	0			REV__ENSG00000107560|ENST00000355624|RAB11FIP2	REV__ENSG00000107560|ENST00000355624|RAB11FIP2	MULTI-MSMS	OvCa99_classI_Rep5	1	554.2847900390625	2	554.282054	1106.54956	1.1264	0.00062432	1.3564	0.00075182	2.4827	0.0013761	554.2824709805941	154.75	0.85602	154.75	154.47	155.33	0					32	16	3	0	0	0	0.2422	1	18135	18135		69.628	3.1983	1	139030	+		32300	17850	26577	26602	35619	35619					0.0005429579534848017
LLNDLQPLQ	9	Unmodified	_LLNDLQPLQ_					0	0	0		nc|ENSG00000285010|A0A2R8YFL7|OOSP4A	nc|ENSG00000285010|A0A2R8YFL7|OOSP4A	nc|ENSG00000285010|A0A2R8YFL7|OOSP4A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.3120727539062	2	527.300581	1052.58661	0.017795	9.3833E-06	-2.8719	-0.0015144	-2.8541	-0.001505	527.2989856960727	33.085	0.39817	30.39	30.302	30.7	-2.6954					12	7	3	0	0	0	0.027455	1	867	867		42.396	0	1	13796			32301	15383	26578	26603	35620	35620					0.06242012131770025
LLNFKQLLN	9	Unmodified	_LLNFKQLLN_					0	0	0			REV__ENST00000607680.5_1_X:114753986-114796820:-|nuORF	REV__ENST00000607680.5_1_X:114753986-114796820:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	552.3032836914062	2	551.834591	1101.65463	-0.82456	-0.00045502	3.7392	0.0020634	2.9147	0.0016084	551.8364752487972	102.66	0.83498	101.14	100.84	101.68	-1.5211					24	15	2	0	0	0	0.027433	1	7060	7060		60.972	0.67798	1	52517	+		32302	28087	26579	26604	35621	35621					0.10786881782428281
LLNFLLPVF	9	Unmodified	_LLNFLLPVF_					0	0	0		ENSG00000182170|ENST00000332314|MRGPRG	ENSG00000182170|ENST00000332314|MRGPRG	ENSG00000182170|ENST00000332314|MRGPRG	MULTI-MSMS	OvCa9_classI_Rep2	2	538.3272094726562	2	538.331153	1074.64775	-5.5921	-0.0030104	-1.9826	-0.0010673	-7.5747	-0.0040777	538.3299819955096	158.56	1.0599	158.33	158.09	159.15	-0.22697					66	21	5	0	0	0	0.63108	1	16099	16099		28.254	1.4582	1	327100			32303	7976	26580	26605	35622	35622					0.11341568901866594
LLNFLLPVF	9	Unmodified	_LLNFLLPVF_					0	0	0		ENSG00000182170|ENST00000332314|MRGPRG	ENSG00000182170|ENST00000332314|MRGPRG	ENSG00000182170|ENST00000332314|MRGPRG	MULTI-MSMS	OvCa9_classI_Rep3	3	538.32666015625	2	538.331153	1074.64775	-5.6218	-0.0030264	-1.795	-0.00096628	-7.4167	-0.0039926	538.3300395836094	158.87	1.4268	157.61	157.3	158.73	-1.267					79	27	5	0	0	0	0.6926	1	13720	13720		20.482	1.1219	1	528870			32304	7976	26580	26605	35623	35623					0.11341568901866594
LLNGIIKDH	9	Unmodified	_LLNGIIKDH_					0	0	0		nc|ENSG00000286105|A0A494BZU4|TMEM217B;ENST00000356757.6_1_6:37180235-37180745:-|nuORF	nc|ENSG00000286105|A0A494BZU4|TMEM217B	nc|ENSG00000286105|A0A494BZU4|TMEM217B	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.7861022949219	2	511.803291	1021.59203	2.4891	0.0012739	-0.13168	-6.7396E-05	2.3574	0.0012065	511.8038574589803	94.743	0.42888	94.743	94.604	95.033	0					14	9	2	0	0	0	0.027232	1	10330	10330		99.375	12.44	1	136640			32305	10701	26581	26606	35624	35624					0.08209735714240196
LLNGLRPLEVL	11	Unmodified	_LLNGLRPLEVL_					0	0	0		HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|112|3|sense	HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|112|3|sense	HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|112|3|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	412.9260559082031	3	412.927329	1235.76016	3.0705	0.0012679	-3.9336	-0.0016243	-0.86309	-0.00035639	412.9250835867229	57.228	1.0137	54.078	53.461	54.475	-3.1504					42	32	2	0	0	0	0.7252	1	1670	1670		12.957	2.3707	1	24423			32306	14460	26582	26607	35625	35625					0.15170797908035638
LLNGVKLV	8	Unmodified	_LLNGVKLV_					0	0	0		ENSG00000140511|ENST00000359595|HAPLN3;ENST00000563808.1_1_15:89424564-89438702:-|nuORF	ENSG00000140511|ENST00000359595|HAPLN3	ENSG00000140511|ENST00000359595|HAPLN3	MULTI-MSMS	OvCa9_classI_Rep3	3	428.2878723144531	2	428.286746	854.558939	0.99158	0.00042468	-0.9535	-0.00040837	0.038079	1.6309E-05	428.28619958305893	106.07	1.3284	104.72	104.35	105.68	-1.3482					67	25	4	0	0	0	0.73288	1	7476	7476		35.201	6.0512	1	507380			32307	4851	26583	26608	35626	35626					0.12584153662191966
LLNIDPVLE	9	Unmodified	_LLNIDPVLE_					0	0	0			REV__VAC14|p.S204L|1|0.11|ENSG00000103043|chr16:70783538-70783538|G/A|missense_variant	REV__VAC14|p.S204L|1|0.11|ENSG00000103043|chr16:70783538-70783538|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.2957153320312	2	513.297507	1024.58046	-1.0624	-0.00054535	-1.7461	-0.00089628	-2.8086	-0.0014416	513.2960537048449	41.497	1.5965	38.516	38.231	39.828	-2.9804					63	30	3	0	0	0	0.5811	1	1889	1889		34.173	0	1	585930	+		32308	32753	26584	26609	35627	35627					0.06915493900260117
LLNIFWLL	8	Unmodified	_LLNIFWLL_					0	0	0		ENST00000397195.9_1_17:2497244-2541483:+|nuORF;ENST00000575477.5_1_17:2497248-2541480:+|nuORF	ENST00000397195.9_1_17:2497244-2541483:+|nuORF	ENST00000397195.9_1_17:2497244-2541483:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.78857421875	2	516.318046	1030.62154	0.99546	0.00051397	-2.5715	-0.0013277	-1.5761	-0.00081374	516.3162844512433	124.64	1.0102	124.64	124.19	125.2	0					56	22	4	0	0	0	0.028476	1	14413	14413		21.702	0	1	366350			32309	11340	26585	26610	35628	35628					0.10745299730388069
LLNILNFGTK	10	Unmodified	_LLNILNFGTK_					0	0	0			REV__nc|ENSG00000075651|Q13393-3|PLD1	REV__nc|ENSG00000075651|Q13393-3|PLD1	MULTI-SECPEP	OvCa9_classI_Rep2	2	566.8087158203125	2	566.839874	1131.66519	-1.1966	-0.00067827	1.0559	0.00059851	-0.14071	-7.976E-05	566.8402476944543	55.016	1.0463	52.202	51.922	52.968	-2.8139					49	20	3	0	0	0	0.026782	1	3793	3793		37.812	0	1	104510	+		32310	28733	26586	26611	35629	35629					0.10462864436840391
LLNIPAAVEF	10	Unmodified	_LLNIPAAVEF_					0	0	0			REV__ENST00000498274.5_1_3:101298554-101298611:+|nuORF	REV__ENST00000498274.5_1_3:101298554-101298611:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	543.8125	2	543.813325	1085.6121	1.8906	0.0010281	-0.087415	-4.7538E-05	1.8032	0.00098059	543.8132257634019	134.2	0.46277	134.2	134.06	134.52	0					17	9	3	0	0	0	0.33376	1	15615	15615		76.774	0	1	370040	+		32311	26792	26587	26612	35630	35630					0.07271486654190085
LLNIQLKTL	9	Unmodified	_LLNIQLKTL_					0	0	0		ENST00000475747.5_1_10:134165051-134188743:+|nuORF	ENST00000475747.5_1_10:134165051-134188743:+|nuORF	ENST00000475747.5_1_10:134165051-134188743:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.3480834960938	2	528.344792	1054.67503	2.5925	0.0013697	-2.5988	-0.001373	-0.006247	-3.3006E-06	528.3433828644603	130.98	1.0893	129.51	129.21	130.3	-1.4779					50	22	3	0	0	0	0.48324	1	12604	12604		44.117	4.864	1	98721			32312	12455	26588	26613	35631	35631					0.14988052442231492
LLNITVLPD	9	Unmodified	_LLNITVLPD_					0	0	0		ENST00000348035.8_1_7:6443258-6443357:+|nuORF	ENST00000348035.8_1_7:6443258-6443357:+|nuORF	ENST00000348035.8_1_7:6443258-6443357:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.2872619628906	2	499.30005	996.585547	-0.604	-0.00030157	-2.2873	-0.001142	-2.8913	-0.0014436	499.2988526686399	41.528	0.47822	41.528	41.33	41.809	0					17	10	2	0	0	0	0.027462	1	2586	2586		19.997	0	1	192120			32313	10636	26589	26614	35632	35632					0.08711797762850892
LLNKAKLPL	9	Unmodified	_LLNKAKLPL_					0	0	0		ENSG00000113615|ENST00000398844|SEC24A;nc|ENSG00000113615|O95486-2|SEC24A;nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B	ENSG00000113615|ENST00000398844|SEC24A;nc|ENSG00000138802|O95487-2|SEC24B	ENSG00000113615|ENST00000398844|SEC24A	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.34136962890625	2	505.342052	1008.66955	2.4457	0.0012359	-3.7738	-0.0019071	-1.3281	-0.00067113	505.33994217432223	135.22	1.8729	133.68	133.11	134.99	-1.5437					124	33	5	0	0	0	0.29717	2	13121	13121;13158		63.306	4.5243	1	1621800			32314	2982;4735	26590	26615	35633;35634	35633					0.16556373650416845
LLNKIPTDL	9	Unmodified	_LLNKIPTDL_					0	0	0			REV__nc|ENSG00000168769|Q6N021-2|TET2	REV__nc|ENSG00000168769|Q6N021-2|TET2	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.2764892578125	2	513.813325	1025.6121	-0.88405	-0.00045423	1.5879	0.0008159	0.70388	0.00036166	513.8137764393929	93.413	0.80779	91.452	91.228	92.036	-1.9617					25	15	2	0	0	0	0.027462	1	5954	5954		19.104	0	1	48787	+		32315	21400	26591	26616	35635	35635					0.10031486654179389
LLNKIYEA	8	Unmodified	_LLNKIYEA_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	OvCa9_classI_Rep3	3	482.32037353515625	2	482.279118	962.543683	0.36885	0.00017789	-0.33871	-0.00016335	0.030135	1.4533E-05	482.27885023376007	114.03	1.6132	112.97	112.58	114.19	-1.055					60	31	3	0	0	0	0.028476	1	8359	8359		40.573	0	1	116130			32316	4962	26592	26617	35636	35636					0.06091242074319325
LLNKIYEA	8	Unmodified	_LLNKIYEA_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	482.279118	962.543683	0.40355	0.00019462	-0.49813	-0.00024024	-0.094586	-4.5617E-05	482.2786607728293	113.06	1.1363	112.94	112.67	113.81	-0.12174	-0.014406	2.5288E-05	NaN	55.504	53	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90217			32317	4962	26592	26617							0.06091242074319325
LLNKVIMF	8	Unmodified	_LLNKVIMF_					0	0	0			REV__tr|A0A7D7A2B9|A0A7D7A2B9_9CLOTTransportpermeaseproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16220PE=3SV=1	REV__tr|A0A7D7A2B9|A0A7D7A2B9_9CLOTTransportpermeaseproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16220PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	489.2979736328125	2	489.296256	976.57796	0.16848	8.2438E-05	3.354	0.0016411	3.5225	0.0017235	489.2978000025302	45.749	0.89899	43.039	42.797	43.696	-2.7097					41	17	3	0	0	0	0.72922	1	2689	2689		37.028	6.5248	1	151430	+		32318	32531	26593	26618	35637	35637					0.08873366961574902
LLNLGNMLIL	10	Unmodified	_LLNLGNMLIL_					0	0	0		ENST00000374227.7_2_9:115804781-115804988:-|nuORF	ENST00000374227.7_2_9:115804781-115804988:-|nuORF	ENST00000374227.7_2_9:115804781-115804988:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	557.3114624023438	2	557.338652	1112.66275	1.237	0.00068941	-1.4519	-0.00080922	-0.21497	-0.00011981	557.3379722132952	112.73	1.2829	112.61	112.08	113.36	-0.12173					40	25	2	0	0	0	0.026462	1	10680	10680		87.754	14.875	1	75154			32319	11028	26594	26619	35638	35638					0.11092692707552487
LLNLKAKPI	9	Unmodified	_LLNLKAKPI_					0	0	0		ENST00000371485.7_1_10:95263083-95266778:+|nuORF	ENST00000371485.7_1_10:95263083-95266778:+|nuORF	ENST00000371485.7_1_10:95263083-95266778:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	505.3419189453125	2	505.342052	1008.66955	-0.1959	-9.8999E-05	-1.673	-0.00084545	-1.8689	-0.00094444	505.3408478582907	133.56	2.7048	133.33	132.13	134.83	-0.22697					158	54	5	0	0	0	0.34496	1	13215	13215		57.811	8.3697	1	1592700			32320	10957	26595	26620	35639	35639					0.16556373650416845
LLNLKAKPI	9	Unmodified	_LLNLKAKPI_					0	0	0		ENST00000371485.7_1_10:95263083-95266778:+|nuORF	ENST00000371485.7_1_10:95263083-95266778:+|nuORF	ENST00000371485.7_1_10:95263083-95266778:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	505.34173583984375	2	505.342052	1008.66955	-1.2256	-0.00061935	0.24452	0.00012356	-0.9811	-0.00049579	505.3419478940064	134.8	1.6252	133.68	133.41	135.03	-1.1226					106	32	5	0	0	0	0.27546	2	10880	10868;10880		65.803	0	1	959590			32321	10957	26595	26620	35640;35641	35641					0.16556373650416845
LLNLKAKPI	9	Unmodified	_LLNLKAKPI_					0	0	0		ENST00000371485.7_1_10:95263083-95266778:+|nuORF	ENST00000371485.7_1_10:95263083-95266778:+|nuORF	ENST00000371485.7_1_10:95263083-95266778:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.341064453125	2	505.342052	1008.66955	2.4457	0.0012359	-3.7738	-0.0019071	-1.3281	-0.00067113	505.33994217432223	135.22	1.8729	133.68	133.11	134.99	-1.5437					124	33	5	0	0	0	0.53957	1	13133	13133		38.806	0	1	1621800			32322	10957	26595	26620	35642	35642					0.16556373650416845
LLNLLFQN	8	Unmodified	_LLNLLFQN_					0	0	0			REV__ENST00000307179.8_1_15:50769169-50769544:+|nuORF	REV__ENST00000307179.8_1_15:50769169-50769544:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	487.7878112792969	2	487.78711	973.559667	-0.68011	-0.00033175	-0.51742	-0.00025239	-1.1975	-0.00058414	487.78717268319804	102.91	1.8832	101.39	100.69	102.57	-1.5211					99	35	5	0	0	0	0.65582	1	7105	7105		52.299	6.3472	1	721970	+		32323	24306	26596	26621	35643	35643					0.0718294831123103
LLNLLRLP	8	Unmodified	_LLNLLRLP_					0	0	0			REV__ENSG00000176142|ENST00000319172|TMEM39A	REV__ENSG00000176142|ENST00000319172|TMEM39A	MULTI-MSMS	OvCa99_classI_Rep5	1	476.3221740722656	2	476.32112	950.627687	1.5222	0.00072507	0.48917	0.000233	2.0114	0.00095807	476.32117733445335	119.68	0.66666	119.68	119.38	120.05	0					36	16	3	0	0	0	0.57878	1	13748	13748		68.485	0	1	919620	+		32324	21932	26597	26622	35644	35644					0.15039817961883273
LLNLVKKI	8	Unmodified	_LLNLVKKI_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	OvCa99_classI_Rep5	1	470.832763671875	2	470.83132	939.648088	2.9986	0.0014118	-0.22576	-0.0001063	2.7728	0.0013055	470.8310547661702	99.054	0.56969	99.054	98.877	99.447	0					35	13	4	0	0	0	0.2589	1	10926	10926		114.59	0	1	2693300			32325	9359	26598	26623	35645	35645					0.17584988621706543
LLNLVKKI	8	Unmodified	_LLNLVKKI_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MATCH	OvCa9_classI_Rep2	2		2	470.83132	939.648088	-0.84534	-0.00039801	0.88849	0.00041833	0.043148	2.0315E-05	470.83164065206824	99.634	0.59541	98.804	98.567	99.162	-0.83051	-0.19272	0.00065514	NaN	114.59	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22577			32326	9359	26598	26623							0.17584988621706543
LLNLVKKI	8	Unmodified	_LLNLVKKI_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MATCH	OvCa9_classI_Rep3	3		2	470.83132	939.648088	-0.37468	-0.00017641	0.17218	8.1068E-05	-0.2025	-9.5343E-05	470.8313052187701	100.74	0.50022	99.132	98.946	99.446	-1.6053	0.13528	-1.9381E-05	NaN	114.59	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15303			32327	9359	26598	26623							0.17584988621706543
LLNLWNLRFP	10	Unmodified	_LLNLWNLRFP_					0	0	0		nc|ENSG00000167815|P32119-2|PRDX2;ENST00000466174.5_1_19:12911560-12912565:-|nuORF	nc|ENSG00000167815|P32119-2|PRDX2	nc|ENSG00000167815|P32119-2|PRDX2	MULTI-MSMS	OvCa9_classI_Rep4_	4	643.3739624023438	2	643.374415	1284.73428	-0.42564	-0.00027384	-2.8884	-0.0018583	-3.3141	-0.0021322	643.3725031128389	92.341	1.5107	89.798	89.466	90.976	-2.5425					96	29	5	0	0	0	0.36605	1	8011	8011		71.296	6.1385	1	1009000			32328	12285	26599	26624	35646	35646					0.10329948456387683
LLNNDMCQL	9	Unmodified	_LLNNDMCQL_					0	0	0			REV__ENSG00000103994|ENST00000564754|ZNF106	REV__ENSG00000103994|ENST00000564754|ZNF106	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.7626953125	2	532.249177	1062.4838	0.86448	0.00046012	1.391	0.00074034	2.2555	0.0012005	532.2520980695272	119.46	0.19839	118.43	118.28	118.48	-1.0271					5	3	2	0	0	0	0.027462	1	9054	9054		42.396	0	1	3818.6	+		32329	17638	26600	26625	35647	35647					-0.04494139922871909
LLNNGVGL	8	Unmodified	_LLNNGVGL_					0	0	0			REV__nc|ENSG00000203668|Q9H1Y3-2|OPN3	REV__nc|ENSG00000203668|Q9H1Y3-2|OPN3	MULTI-SECPEP	OvCa9_classI_Rep2	2	400.2471008300781	2	400.237253	798.459953	0.8776	0.00035125	0.32345	0.00012946	1.201	0.0004807	400.2373109647156	56.59	0.59435	53.786	53.473	54.068	-2.804					15	11	2	0	0	0	0.028476	1	3966	3966		54.765	10.234	1	23325	+		32330	16699	26601	26626	35648	35648					0.052661306972822786
LLNNQKVQV	9	Unmodified	_LLNNQKVQV_					0	0	0		tr|A0A7D6ZHV4|A0A7D6ZHV4_9CLOTSH3domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04445PE=4SV=1	tr|A0A7D6ZHV4|A0A7D6ZHV4_9CLOTSH3domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04445PE=4SV=1	tr|A0A7D6ZHV4|A0A7D6ZHV4_9CLOTSH3domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04445PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.314453125	2	528.314023	1054.61349	-1.6367	-0.00086471	1.2522	0.00066158	-0.38449	-0.00020313	528.3145193728725	92.89	1.049	90.383	90.01	91.059	-2.5072					46	20	4	0	0	0	0.31747	1	8083	8083		60.972	2.742	1	592830			32331	35592	26602	26627	35649	35649					0.08837120742941806
LLNPAITRLV	10	Unmodified	_LLNPAITRLV_					0	0	0		L1MEd_dup8982|chr6:160099964-160100724:+|2.2579659231395626|0.0849947119753676|4.73|429.0|45|2|anti-sense	L1MEd_dup8982|chr6:160099964-160100724:+|2.2579659231395626|0.0849947119753676|4.73|429.0|45|2|anti-sense	L1MEd_dup8982|chr6:160099964-160100724:+|2.2579659231395626|0.0849947119753676|4.73|429.0|45|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.35302734375	2	555.355691	1108.69683	-5.7234	-0.0031785	1.8077	0.0010039	-3.9157	-0.0021746	555.3566390635189	159.36	1.8651	157.77	157.41	159.27	-1.5858					127	42	5	0	0	0	0.7759	1	15752	15752		21.96	1.013	1	1093300			32332	14626	26603	26628	35650	35650					0.14682857190769028
LLNPLIHRFYR	11	Unmodified	_LLNPLIHRFYR_					0	0	0		ENST00000267068.5_2_13:33110836-33110986:-|nuORF	ENST00000267068.5_2_13:33110836-33110986:-|nuORF	ENST00000267068.5_2_13:33110836-33110986:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	481.2829284667969	3	481.285739	1440.83539	-6.6786	-0.0032143	2.0959	0.0010087	-4.5828	-0.0022056	481.2868612614486	161.01	3.7232	159.65	158.49	162.21	-1.3523					206	77	3	0	0	0	0.72507	1	14016	14016		14.694	1.7362	1	127690			32333	9962	26604	26629	35651	35651					0.13260400159106212
LLNQLFKNL	9	Unmodified	_LLNQLFKNL_					0	0	0			REV__nc|ENSG00000109762|Q9H3E2|SNX25	REV__nc|ENSG00000109762|Q9H3E2|SNX25	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.3026123046875	2	551.834591	1101.65463	-0.52009	-0.00028701	3.3947	0.0018733	2.8746	0.0015863	551.8367904728327	101.72	0.64499	100.96	100.77	101.41	-0.76401					20	12	2	0	0	0	0.027441	1	9383	9383		45.952	0	1	35956	+		32334	17948	26605	26630	35652	35652					0.10786881782405544
LLNQLGIVL	9	Unmodified	_LLNQLGIVL_					0	0	0			REV__ENSG00000167077|ENST00000401548|MEI1	REV__ENSG00000167077|ENST00000401548|MEI1	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.77484130859375	2	491.81841	981.622267	-0.88137	-0.00043347	-0.50812	-0.0002499	-1.3895	-0.00068338	491.81844579570355	33.993	0.24076	33.993	33.776	34.017	0					5	4	2	0	0	0	0.027462	1	1588	1588		25.45	7.1258	1	8225.7	+		32335	21249	26606	26631	35653	35653					0.13072094379401733
LLNRMVLL	8	Unmodified	_LLNRMVLL_					0	0	0			REV__nc|ENSG00000159363|Q9NQ11-2|ATP13A2;REV__ENSG00000159363|ENST00000326735|ATP13A2	REV__ENSG00000159363|ENST00000326735|ATP13A2	MULTI-MSMS	OvCa9_classI_Rep2	2	486.3047790527344	2	486.307155	970.599758	-1.0237	-0.00049782	-2.7767	-0.0013503	-3.8003	-0.0018481	486.3057082440577	120.4	1.6293	120.23	119.94	121.57	-0.17138					88	32	4	0	0	0	0.73288	1	11625	11625		35.201	1.6851	1	594410	+		32336	28955;20612	26607	26632	35654	35654					0.11328171710158585
LLNRPTDP	8	Unmodified	_LLNRPTDP_					0	0	0		ENSG00000115486|ENST00000233838|GGCX;ENST00000496962.1_1_2:85786016-85788551:-|nuORF;GGCX|p.D153Efs*33|1|0.39|ENSG00000115486|chr2:85558507-85558520|TCCATGATGTCTTG/-|frameshift_variant	ENSG00000115486|ENST00000233838|GGCX	ENSG00000115486|ENST00000233838|GGCX	MULTI-SECPEP	OvCa9_classI_Rep3	3	462.3244323730469	2	463.258717	924.50288	-1.0587	-0.00049047	-4.0743	-0.0018875	-5.1331	-0.0023779	463.256664670385	82.82	0.55009	80.524	80.332	80.882	-2.2963					13	10	2	0	0	0	0.028476	1	4670	4670		45.952	15.448	1	31166			32337	3102	26608	26633	35655	35655					0.03760900754696195
LLNRPTDP	8	Unmodified	_LLNRPTDP_					0	0	0		ENSG00000115486|ENST00000233838|GGCX;ENST00000496962.1_1_2:85786016-85788551:-|nuORF;GGCX|p.D153Efs*33|1|0.39|ENSG00000115486|chr2:85558507-85558520|TCCATGATGTCTTG/-|frameshift_variant	ENSG00000115486|ENST00000233838|GGCX	ENSG00000115486|ENST00000233838|GGCX	MULTI-MATCH	OvCa9_classI_Rep2	2		2	463.258717	924.50288	0.36624	0.00016966	-3.2045	-0.0014845	-2.8383	-0.0013149	463.2571478094937	82.374	0.46992	80.776	80.54	81.01	-1.5988	0.12583	0.00031391	NaN	45.952	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13965			32338	3102	26608	26633							0.03760900754696195
LLNRQSLRQKW	11	Unmodified	_LLNRQSLRQKW_					0	0	0		ENST00000402136.5_1_2:242523922-242524009:-|nuORF	ENST00000402136.5_1_2:242523922-242524009:-|nuORF	ENST00000402136.5_1_2:242523922-242524009:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	481.28240966796875	3	481.284398	1440.83137	-4.9615	-0.0023879	3.1803	0.0015306	-1.7812	-0.00085727	481.2860740283405	157.97	1.8192	157.75	157.13	158.95	-0.22696					94	52	3	0	0	0	0.72542	1	16052	16052		10.104	3.783	1	26892			32339	11424	26609	26634	35656	35656					0.12858310665387762
LLNRYAIQH	9	Unmodified	_LLNRYAIQH_					0	0	0			REV__PLXND1|p.C661R|1|0.33|ENSG00000004399|chr3:129584433-129584433|A/G|missense_variant	REV__PLXND1|p.C661R|1|0.33|ENSG00000004399|chr3:129584433-129584433|A/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	564.3229370117188	2	564.31964	1126.62473	3.1763	0.0017924	3.3999	0.0019186	6.5762	0.0037111	564.3213788592631	26.344	0.90757	23.635	23.418	24.326	-2.7097					50	25	3	0	0	0	0.69895	1	354	354		18.324	0.95945	1	124260	+		32340	29305	26610	26635	35657	35657					0.06647942837071241
LLNSPPLL	8	Unmodified	_LLNSPPLL_					0	0	0		ENST00000556739.5_1_14:92918938-92928484:+|nuORF	ENST00000556739.5_1_14:92918938-92928484:+|nuORF	ENST00000556739.5_1_14:92918938-92928484:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	434.25897216796875	2	433.770929	865.527304	-0.28785	-0.00012486	1.9315	0.00083781	1.6436	0.00071295	433.7715835004572	50.249	0.39531	50.249	50.114	50.509	0					13	8	2	0	0	0	0.028476	1	3811	3811		13.775	0	1	97062			32341	13671	26611	26636	35658	35658					0.08916160908222537
LLNVLRIL	8	Unmodified	_LLNVLRIL_					0	0	0			REV__tr|A0A553SQ09|A0A553SQ09_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15360PE=4SV=1	REV__tr|A0A553SQ09|A0A553SQ09_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15360PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	477.3312072753906	2	477.328945	952.643337	1.622	0.00077423	0.073482	3.5075E-05	1.6955	0.00080931	477.328826007664	130.28	1.3788	130.28	130.01	131.39	0					54	28	3	0	0	0	0.65582	1	15102	15102		52.299	2.8576	1	357090	+		32342	30594	26612	26637	35659	35659					0.16512104478943002
LLNVNFPVAI	10	Unmodified	_LLNVNFPVAI_					0	0	0		tr|A0A7D7A4G8|A0A7D7A4G8_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01670PE=4SV=1	tr|A0A7D7A4G8|A0A7D7A4G8_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01670PE=4SV=1	tr|A0A7D7A4G8|A0A7D7A4G8_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01670PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	550.328125	2	550.329142	1098.64373	-1.5659	-0.00086175	-2.871	-0.00158	-4.4368	-0.0024417	550.3275336090328	86.284	1.4089	84.064	83.686	85.095	-2.2204					106	27	5	0	0	0	0.50656	1	5107	5107		53.351	5.4358	1	3899600			32343	36144	26613	26638	35660	35660					0.09835479408138781
LLNVTELTQ	9	Unmodified	_LLNVTELTQ_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1;STAT1|p.P251Afs*28|1|0.05|ENSG00000115415|chr2:190997890-190997891|-/C|frameshift_variant	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7940673828125	2	515.792589	1029.57063	-0.27379	-0.00014122	0.021588	1.1135E-05	-0.2522	-0.00013008	515.7924868825856	121.83	1.5653	120.48	120.21	121.77	-1.3479					77	30	4	0	0	0	0.1804	1	11540	11540		79.713	13.283	1	178230			32344	3094	26614	26639	35661	35661					0.05702305894828896
LLNWPALL	8	Unmodified	_LLNWPALL_					0	0	0		ENST00000509376.5_1_4:52779756-52779993:+|nuORF	ENST00000509376.5_1_4:52779756-52779993:+|nuORF	ENST00000509376.5_1_4:52779756-52779993:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	469.80596923828125	2	470.286746	938.558939	-0.21563	-0.00010141	-4.2665	-0.0020065	-4.4822	-0.0021079	470.28451797536786	90.35	0.76909	88.27	87.85	88.619	-2.0805					21	14	2	0	0	0	0.028476	1	5561	5561		57.453	0	1	12734			32345	12960	26615	26640	35662	35662					0.08720153662181929
LLNWPALL	8	Unmodified	_LLNWPALL_					0	0	0		ENST00000509376.5_1_4:52779756-52779993:+|nuORF	ENST00000509376.5_1_4:52779756-52779993:+|nuORF	ENST00000509376.5_1_4:52779756-52779993:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	470.286746	938.558939	0.45782	0.00021531	-4.4593	-0.0020972	-4.0015	-0.0018819	470.2842885341314	90.812	0.56442	88.237	87.956	88.52	-2.575	-0.016408	-0.0001512	NaN	74.517	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19018			32346	12960	26615	26640							0.08720153662181929
LLNYLYVPL	9	Unmodified	_LLNYLYVPL_					0	0	0			REV__ENST00000260327.8_1_15:44817819-44817921:+|nuORF	REV__ENST00000260327.8_1_15:44817819-44817921:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.302490234375	2	554.326068	1106.63758	0.59167	0.00032798	-3.9156	-0.0021705	-3.3239	-0.0018425	554.3235894430262	72.27	0.36423	72.27	72.086	72.45	0					15	8	2	0	0	0	0.027462	1	7024	7024		25.45	4.5032	1	819490	+		32347	23924	26616	26641	35663	35663					0.08852961176603458
LLNYSLIQF	9	Unmodified	_LLNYSLIQF_					0	0	0			REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|155|1|anti-sense	REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|155|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.2864379882812	2	555.813325	1109.6121	1.8128	0.0010076	-1.0882	-0.00060484	0.72462	0.00040275	555.8125498201066	106.93	0.55861	106.93	106.67	107.23	0					16	12	2	0	0	0	0.027462	1	12085	12085		37.812	3.639	1	269080	+		32348	28381	26617	26642	35664	35664					0.061674866541807205
LLPAAKKYD	9	Unmodified	_LLPAAKKYD_					0	0	0		tr|A0A553SJ05|A0A553SJ05_NIACIZinctransporterZupTOS=NialliacirculansOX=1397GN=zupTPE=3SV=1	tr|A0A553SJ05|A0A553SJ05_NIACIZinctransporterZupTOS=NialliacirculansOX=1397GN=zupTPE=3SV=1	tr|A0A553SJ05|A0A553SJ05_NIACIZinctransporterZupTOS=NialliacirculansOX=1397GN=zupTPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.82080078125	2	509.800217	1017.58588	-0.34623	-0.00017651	-0.40579	-0.00020687	-0.75202	-0.00038338	509.80001296128216	123.51	0.98878	122.14	121.85	122.84	-1.3666					44	19	3	0	0	0	0.027392	1	11716	11716		73.975	0	1	62860			32349	33449	26618	26643	35665	35665					0.07779217482698186
LLPAQIGKLSQ	11	Unmodified	_LLPAQIGKLSQ_					0	0	0			REV__ENSG00000260456|ENST00000567970|C16orf95	REV__ENSG00000260456|ENST00000567970|C16orf95	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.356201171875	2	584.358431	1166.70231	-1.7162	-0.0010029	-1.68	-0.00098173	-3.3962	-0.0019846	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.72466	1	14555	14555		19.997	0	1	833330	+		32350	23561	26619	26644	35666	35666					0.1256253598260173
LLPAQRELAL	10	Unmodified	_LLPAQRELAL_					0	0	0			REV__ENST00000358007.7_1_12:12967074-12974210:+|nuORF	REV__ENST00000358007.7_1_12:12967074-12974210:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	562.3429565429688	2	562.345323	1122.67609	-2.9015	-0.0016316	-0.70711	-0.00039764	-3.6086	-0.0020293	562.3448419475409	142.33	4.504	141.32	140	144.5	-1.0106					205	90	3	0	0	0	0.71192	1	11889	11889		29.15	0	1	106680	+		32351	24792	26620	26645	35667	35667					0.11966266811100468
LLPARPSL	8	Unmodified	_LLPARPSL_					0	0	0		ENST00000573483.1_1_17:3785816-3788993:-|nuORF;CAMKK1|p.K411Afs*27|1|0.06|ENSG00000004660|chr17:3869598-3869599|-/ACGTGGGCTCTGGGGGAGAAGCA|frameshift_variant;ENSG00000004660|ENST00000348335|CAMKK1;nc|ENSG00000004660|Q8N5S9-2|CAMKK1	ENST00000573483.1_1_17:3785816-3788993:-|nuORF	ENST00000573483.1_1_17:3785816-3788993:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	433.7759704589844	2	433.776545	865.538538	-0.012289	-5.3307E-06	0.31994	0.00013878	0.30765	0.00013345	433.77652204102844	83.183	2.0991	81.584	80.645	82.744	-1.5989					79	41	3	0	0	0	0.67745	1	7147	7147		47.916	0	1	545560			32352	178	26621	26646	35668	35668					0.10038983002368695
LLPASALNVHM	11	Oxidation (M)	_LLPASALNVHM(Oxidation (M))_		LLPASALNVHM(1)		LLPASALNVHM(49)	0	0	1			REV__ENST00000494263.5_1_2:219646839-219678911:+|nuORF	REV__ENST00000494263.5_1_2:219646839-219678911:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	591.3230590820312	2	591.320991	1180.62743	0.49894	0.00029503	2.6748	0.0015817	3.1738	0.0018767	591.3225047391371	42.256	1.1351	39.547	39.275	40.41	-2.7097					60	22	4	0	0	0	0.54764	1	2280	2280		49.442	7.0454	1	307350	+		32353	19337	26622	26647	35669	35669		444			0.04434030179709225
LLPCIEQF	8	Unmodified	_LLPCIEQF_					0	0	0			REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-MSMS	OvCa99_classI_Rep5	1	481.7554016113281	2	481.754421	961.494289	0.75994	0.00036611	-1.1879	-0.00057228	-0.42797	-0.00020618	481.75416036070254	159.5	0.37697	159.5	159.33	159.71	0					11	7	2	0	0	0	0.6962	1	18707	18707		44.117	3.5442	1	24240	+		32354	21647	26623	26648	35670	35670					0.012002107938656081
LLPEFEEF	8	Unmodified	_LLPEFEEF_					0	0	0		tr|A0A553SGP7|A0A553SGP7_NIACIExtracellularsolute-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_11250PE=4SV=1	tr|A0A553SGP7|A0A553SGP7_NIACIExtracellularsolute-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_11250PE=4SV=1	tr|A0A553SGP7|A0A553SGP7_NIACIExtracellularsolute-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_11250PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	512.2547607421875	2	512.255308	1022.49606	-0.86994	-0.00044563	-2.5048	-0.0012831	-3.3748	-0.0017287	512.2539630058868	86.701	3.116	84.524	83.979	87.095	-2.1768					189	61	5	0	0	0	0.73288	1	5182	5182		35.201	3.2459	1	2198600			32355	33179	26624	26649	35671	35671					-0.014284569165170069
LLPELMGPVT	10	Unmodified	_LLPELMGPVT_					0	0	0			REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A	REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.815673828125	2	535.301736	1068.58892	1.6558	0.00088637	-2.3984	-0.0012839	-0.74257	-0.0003975	535.3004297902874	81.828	0.80814	81.828	81.413	82.222	0					25	19	2	0	0	0	0.026915	1	8494	8494		35.618	12.576	1	533970	+		32356	22872	26625	26650	35672	35672					0.05736724545204197
LLPEPLQRA	9	Unmodified	_LLPEPLQRA_					0	0	0		ENST00000337539.11_3_22:24829130-24829193:+|nuORF	ENST00000337539.11_3_22:24829130-24829193:+|nuORF	ENST00000337539.11_3_22:24829130-24829193:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	518.8114624023438	2	518.811116	1035.60768	0.52386	0.00027178	-0.58628	-0.00030417	-0.062417	-3.2383E-05	518.8107070001696	157.42	0.55392	157.42	157.2	157.75	0					15	10	2	0	0	0	0.31747	1	18448	18448		60.972	9.6365	1	54199			32357	10527	26626	26651	35673	35673					0.09130022231261137
LLPEVWPEL	9	Unmodified	_LLPEVWPEL_					0	0	0		ENST00000228506.7_1_12:121137175-121137400:+|nuORF	ENST00000228506.7_1_12:121137175-121137400:+|nuORF	ENST00000228506.7_1_12:121137175-121137400:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.2478637695312	2	548.307875	1094.6012	0.86105	0.00047212	0.45652	0.00025031	1.3176	0.00072243	548.3079596792111	142.65	0.54454	142.65	142.39	142.93	0					19	10	3	0	0	0	0.027408	1	16695	16695		57.811	0	1	60008			32358	9713	26627	26652	35674	35674					0.05768084279884533
LLPGAWTLLL	10	Unmodified	_LLPGAWTLLL_					0	0	0			REV__ENSG00000179921|ENST00000519574|GPBAR1	REV__ENSG00000179921|ENST00000519574|GPBAR1	MULTI-MSMS	OvCa99_classI_Rep5	1	548.841552734375	2	548.841885	1095.66922	0.4379	0.00024034	0.91641	0.00050297	1.3543	0.00074331	548.8421585632498	160.42	0.60187	160.42	160.16	160.76	0					22	10	3	0	0	0	0.49049	1	18808	18808		55.504	2.1528	1	49492	+		32359	22147	26628	26653	35675	35675					0.12520953930561518
LLPGCIALY	9	Unmodified	_LLPGCIALY_					0	0	0			REV__ENSG00000186440|ENST00000641540|OR6P1	REV__ENSG00000186440|ENST00000641540|OR6P1	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.7859191894531	2	481.772614	961.530675	0.96854	0.00046662	-1.8779	-0.00090472	-0.90936	-0.00043811	481.7713285862011	139.87	0.46237	139.87	139.51	139.97	0					14	9	2	0	0	0	0.027462	1	16309	16309		29.842	0	1	26268	+		32360	22584	26629	26654	35676	35676					0.04837087690577846
LLPGDKIGLH	10	Unmodified	_LLPGDKIGLH_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8162231445312	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.72319	1	13803	13803		27.882	4.8398	1	166960			32361	9475	26630	26655	35677	35677					0.09498308748334239
LLPGLNIWI	9	Unmodified	_LLPGLNIWI_					0	0	0			REV__ENSG00000156017|ENST00000376834|CARNMT1	REV__ENSG00000156017|ENST00000376834|CARNMT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.6021118164062	2	519.820953	1037.62735	-0.48281	-0.00025097	-3.5858	-0.001864	-4.0686	-0.0021149	519.8189827557918	44.986	0.66347	44.986	44.75	45.413	0					31	14	3	0	0	0	0.027462	1	3095	3095		17.365	0	1	322890	+		32362	20458	26631	26656	35678	35678					0.11004398242016578
LLPGLVVK	8	Unmodified	_LLPGLVVK_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11;PDCD11|p.H335Ifs*9|1|0.07|ENSG00000148843|chr10:103413139-103413139|C/-|frameshift_variant	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-SECPEP	OvCa9_classI_Rep2	2	420.23480224609375	2	419.791664	837.568775	1.5047	0.00063166	-1.1645	-0.00048883	0.34022	0.00014282	419.7911401924111	91.261	0.95232	90.025	89.742	90.694	-1.2355					31	17	3	0	0	0	0.028476	1	8104	8104		33.516	0	1	43478			32363	5429	26632	26657	35679	35679					0.14349341667559656
LLPGLVVK	8	Unmodified	_LLPGLVVK_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11;PDCD11|p.H335Ifs*9|1|0.07|ENSG00000148843|chr10:103413139-103413139|C/-|frameshift_variant	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-SECPEP	OvCa9_classI_Rep3	3	420.2363586425781	2	419.791664	837.568775	-0.35998	-0.00015111	0.38618	0.00016212	0.026209	1.1002E-05	419.79175566516983	91.891	0.59616	89.867	89.584	90.18	-2.0241					23	11	3	0	0	0	0.028476	1	5802	5802		65.897	21.366	1	82041			32364	5429	26632	26657	35680	35680					0.14349341667559656
LLPGRGGLI	9	Unmodified	_LLPGRGGLI_					0	0	0		tr|A0A553SF28|A0A553SF28_NIACIPTSsugartransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_08130PE=4SV=1	tr|A0A553SF28|A0A553SF28_NIACIPTSsugartransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_08130PE=4SV=1	tr|A0A553SF28|A0A553SF28_NIACIPTSsugartransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_08130PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	448.2913513183594	2	448.28982	894.565087	1.8734	0.00083983	0.37744	0.0001692	2.2509	0.001009	448.2898368441207	111.63	0.77699	111.63	111.33	112.11	0					39	16	3	0	0	0	0.25214	1	12685	12685		68.485	2.5872	1	464400			32365	32983	26633	26658	35681	35681					0.1135867189370856
LLPGSRRAS	9	Unmodified	_LLPGSRRAS_					0	0	0		ENST00000350498.7_1_7:99006166-99006442:-|nuORF	ENST00000350498.7_1_7:99006166-99006442:-|nuORF	ENST00000350498.7_1_7:99006166-99006442:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	478.7848815917969	2	478.785433	955.556313	-2.4635	-0.0011795	2.3243	0.0011128	-0.13927	-6.6679E-05	478.7864521794397	145.79	1.5385	145.57	144.98	146.52	-0.22696					81	30	4	0	0	0	0.63422	1	14721	14721		27.882	2.4321	1	230950			32366	10650	26634	26659	35682	35682					0.0767569825721921
LLPGVKDPNL	10	Unmodified	_LLPGVKDPNL_					0	0	0		nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;SUPT5H|p.F340Rfs*39|1|0.15|ENSG00000196235|chr19:39466722-39466731|GCTGTTTGAT/-|frameshift_variant;ENST00000598459.5_1_19:39949480-39950711:+|nuORF	nc|ENSG00000196235|O00267-2|SUPT5H	nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.317626953125	2	533.318774	1064.623	-0.079823	-4.2571E-05	-2.419	-0.0012901	-2.4988	-0.0013327	533.3172902188884	35.614	1.0487	32.765	32.491	33.539	-2.849					43	20	3	0	0	0	0.66721	1	1150	1150		34.173	3.8548	1	240560			32367	8581	26635	26660	35683	35683					0.09326889028443475
LLPHGGLGAAL	11	Unmodified	_LLPHGGLGAAL_					0	0	0			REV__SYT3|p.R394Pfs*16|1|0.58|ENSG00000213023|chr19:50629378-50629394|GCCGATGAGGTCGTGCC/-|frameshift_variant	REV__SYT3|p.R394Pfs*16|1|0.58|ENSG00000213023|chr19:50629378-50629394|GCCGATGAGGTCGTGCC/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.2654113769531	2	509.805834	1017.59712	0.38009	0.00019377	-4.4303	-0.0022586	-4.0502	-0.0020648	509.8034056371475	141.42	1.4059	139.96	139.14	140.55	-1.4627					37	26	2	0	0	0	0.025902	1	13850	13850		24.203	11.244	1	21615	+		32368	23252	26636	26661	35684	35684					0.08902039576844345
LLPHLHLLL	9	Unmodified	_LLPHLHLLL_					0	0	0			REV__ENST00000301732.9_1_16:2358503-2367727:-|nuORF	REV__ENST00000301732.9_1_16:2358503-2367727:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.319091796875	2	534.850045	1067.68554	-1.8125	-0.00096942	-3.7642	-0.0020133	-5.5767	-0.0029827	534.8478977766857	101.04	0.67866	98.773	98.342	99.02	-2.2665					16	13	2	0	0	0	0.027462	1	9077	9077		21.702	4.3374	1	51655	+		32369	24251	26637	26662	35685	35685					0.15440079887343927
LLPHLLPLL	9	Unmodified	_LLPHLLPLL_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	OvCa99_classI_Rep5	1	514.8491821289062	2	514.846971	1027.67939	1.1367	0.00058524	1.2785	0.00065821	2.4152	0.0012435	514.8474315969277	146.52	1.1295	146.52	146.23	147.36	0					51	22	4	0	0	0	0.42921	1	17127	17127		49.211	0	1	258560			32370	2471	26638	26663	35686	35686					0.16665561655804595
LLPHLVLLP	9	Unmodified	_LLPHLVLLP_					0	0	0			REV__ENST00000304733.7_1_16:90071524-90072217:-|nuORF	REV__ENST00000304733.7_1_16:90071524-90072217:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3212585449219	2	507.839146	1013.66374	3.2724	0.0016618	-1.4837	-0.00075346	1.7887	0.00090838	507.83827849384477	97.436	0.34451	97.436	97.267	97.611	0					11	7	2	0	0	0	0.027462	1	10718	10718		21.702	0	1	203450	+		32371	24278	26639	26664	35687	35687					0.15745275138749548
LLPHPLGPVVT	11	Unmodified	_LLPHPLGPVVT_					0	0	0		ENST00000288699.10_1_2:27170263-27170530:+|nuORF	ENST00000288699.10_1_2:27170263-27170530:+|nuORF	ENST00000288699.10_1_2:27170263-27170530:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.2745361328125	2	571.850242	1141.68593	0.89293	0.00051062	1.0461	0.00059823	1.9391	0.0011088	571.8506565482486	142.69	0.68468	142.69	142.34	143.02	0					25	13	3	0	0	0	0.0253	1	16646	16646		42.396	9.5837	1	72190			32372	10083	26640	26665	35688	35688					0.12075454816499587
LLPIATRLV	9	Unmodified	_LLPIATRLV_					0	0	0		FADS6|p.P193R|1|0.22|ENSG00000172782|chr17:74882544-74882544|G/C|missense_variant	FADS6|p.P193R|1|0.22|ENSG00000172782|chr17:74882544-74882544|G/C|missense_variant	FADS6|p.P193R|1|0.22|ENSG00000172782|chr17:74882544-74882544|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3338317871094	2	498.334227	994.653902	0.034655	1.727E-05	-0.51496	-0.00025662	-0.48031	-0.00023935	498.3339335091273	123.54	3.2541	123.31	122.99	126.25	-0.23193					175	65	5	0	0	0	0.50149	1	12082	12082		42.396	1.8235	1	3004600			32373	14319	26641	26666	35689	35689					0.15636087133373167
LLPIIITYFLS	11	Unmodified	_LLPIIITYFLS_					0	0	0			REV__ENSG00000196578|ENST00000358642|OR5AC2	REV__ENSG00000196578|ENST00000358642|OR5AC2	MULTI-SECPEP	OvCa9_classI_Rep3	3	431.5671081542969	3	431.60033	1291.77916	0.58341	0.0002518	-0.32253	-0.0001392	0.26088	0.0001126	431.6000998010932	72.67	0.34828	70.068	69.919	70.267	-2.6023					8	6	2	0	0	0	0.026068	1	3486	3486		21.78	4.6137	1	4346.4	+		32374	22844	26642	26667	35690	35690					0.14494334479081772
LLPIPTKVQTT	11	Unmodified	_LLPIPTKVQTT_					0	0	0			REV__SRCAP|p.L2600Afs*30|1|0.06|ENSG00000080603|chr16:30737837-30737838|-/G|frameshift_variant	REV__SRCAP|p.L2600Afs*30|1|0.06|ENSG00000080603|chr16:30737837-30737838|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	605.8712768554688	2	605.873914	1209.73327	-4.4328	-0.0026857	1.2467	0.00075536	-3.186	-0.0019303	605.8745511795182	157.17	1.2501	156	155.65	156.91	-1.1707					83	31	4	0	0	0	0.72459	1	13569	13569		20.947	1.8434	1	204530	+		32375	17056	26643	26668	35691	35691					0.13679689296827746
LLPISGRGPL	10	Unmodified	_LLPISGRGPL_					0	0	0		ENST00000399799.2_1_18:18691173-18691332:-|nuORF	ENST00000399799.2_1_18:18691173-18691332:-|nuORF	ENST00000399799.2_1_18:18691173-18691332:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.7861022949219	2	511.821484	1021.62842	2.4945	0.0012767	-3.8765	-0.0019841	-1.382	-0.00070736	511.819346722989	94.765	0.21521	94.765	94.69	94.905	0					5	4	2	0	0	0	0.026493	1	10330	10330		74.255	27.489	1	41879			32376	11401	26644	26669	35692	35692					0.11846612610952434
LLPKFHLGRN	10	Unmodified	_LLPKFHLGRN_					0	0	0			REV__L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|183|3|anti-sense	REV__L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|183|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8561401367188	2	597.858932	1193.70331	-3.1766	-0.0018991	-1.0809	-0.0006462	-4.2574	-0.0025453	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.71192	1	14985	14985		29.15	2.4566	1	436470	+		32377	28395	26645	26670	35693	35693					0.11420795142203133
LLPKGSGR	8	Unmodified	_LLPKGSGR_					0	0	0		ENST00000575844.1_1_17:6939894-6940281:+|nuORF	ENST00000575844.1_1_17:6939894-6940281:+|nuORF	ENST00000575844.1_1_17:6939894-6940281:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.8982238769531	2	414.25852	826.502486	-0.4958	-0.00020539	0.67763	0.00028071	0.18183	7.5324E-05	414.2586129395333	40.64	1.0432	37.686	37.474	38.517	-2.9541					34	19	2	0	0	0	0.028476	1	1786	1786		25.45	11.675	1	42018			32378	13943	26646	26671	35694	35694					0.08229525825527162
LLPKKAWF	8	Unmodified	_LLPKKAWF_					0	0	0			REV__ENST00000505151.5_1_5:180674073-180684306:+|nuORF	REV__ENST00000505151.5_1_5:180674073-180684306:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	501.8107604980469	2	501.810388	1001.60622	0.85939	0.00043125	0.80098	0.00040194	1.6604	0.00083319	501.810563735547	157.32	1.05	157.32	157.1	158.15	0					31	20	2	0	0	0	0.75241	1	18440	18440		25.45	3.4903	1	71193	+		32379	26873	26647	26672	35695	35695					0.10548432933171625
LLPKLFFD	8	Unmodified	_LLPKLFFD_					0	0	0		tr|A0A553STS8|A0A553STS8_NIACIDUF2088domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05545PE=4SV=1	tr|A0A553STS8|A0A553STS8_NIACIDUF2088domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05545PE=4SV=1	tr|A0A553STS8|A0A553STS8_NIACIDUF2088domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05545PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.7897644042969	2	496.794404	991.574254	-0.79944	-0.00039716	-3.4439	-0.0017109	-4.2433	-0.002108	496.7925627435403	117.68	1.4165	116.33	116	117.42	-1.3444					61	26	4	0	0	0	0.69415	1	11008	11008		44.531	2.0566	1	167600			32380	34528	26648	26673	35696	35696					0.07813020459366271
LLPLAPSN	8	Unmodified	_LLPLAPSN_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1;NFE2L1|p.L707Tfs*5|1|0.59|ENSG00000082641|chr17:48059439-48059440|-/GA|frameshift_variant	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-MSMS	OvCa9_classI_Rep2	2	412.74615478515625	2	412.747453	823.480354	0.89602	0.00036983	-3.8761	-0.0015999	-2.9801	-0.00123	412.745727074971	134.3	1.3763	134.07	133.07	134.44	-0.22697					63	27	4	0	0	0	0.73288	1	13253	13253		35.201	5.3592	1	259910			32381	1683	26649	26674	35697	35697					0.06155301357091503
LLPLELLPLLL	11	Unmodified	_LLPLELLPLLL_					0	0	0			REV__nc|ENSG00000095713|Q9NQ79-3|CRTAC1	REV__nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-MSMS	OvCa9_classI_Rep3	3	623.9193115234375	2	623.922875	1245.8312	-6.0051	-0.0037467	-3.9162	-0.0024434	-9.9213	-0.0061901	623.9202937363024	164.58	0.86269	163.17	162.86	163.73	-1.4083					55	31	2	0	0	0	0.72567	1	14367	14367		6.7355	0	1	34551	+		32382	28761	26650	26675	35698	35698					0.2181149789284973
LLPLGRLLL	9	Unmodified	_LLPLGRLLL_					0	0	0			REV__ENST00000268296.8_1_16:31373430-31374502:+|nuORF	REV__ENST00000268296.8_1_16:31373430-31374502:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	504.35296630859375	2	504.35242	1006.69029	1.4691	0.00074096	0.53527	0.00026996	2.0044	0.0010109	504.35241445206856	147.87	0.67674	147.87	147.55	148.23	0					25	13	3	0	0	0	0.42057	1	17307	17307		50.025	7.5501	1	63363	+		32383	24055	26651	26676	35699	35699					0.18720964030080722
LLPLGTGAVRL	11	Unmodified	_LLPLGTGAVRL_					0	0	0			REV__chr16:30095434-30095959|224|20.17|0.62|5.01|-|2|YPEL3,None|1	REV__chr16:30095434-30095959|224|20.17|0.62|5.01|-|2|YPEL3,None|1	MULTI-MSMS	OvCa9_classI_Rep2	2	555.3526611328125	2	555.355691	1108.69683	-4.1933	-0.0023288	0.44804	0.00024882	-3.7453	-0.00208	555.3557970844861	158.57	1.1439	158.34	158.06	159.2	-0.22696					59	23	4	0	0	0	0.69455	1	16126	16126		31.53	15.057	1	239990	+		32384	15932	26652	26677	35700	35700					0.14682857190791765
LLPLGYRLS	9	Unmodified	_LLPLGYRLS_					0	0	0			REV__PLXNA3|p.E402_G403insPWACGGGDSLRY|1|0.54|ENSG00000130827|chrX:154462199-154462200|-/CCCTGGGCATGTGGGGGTGGGGACAGTCTCAGATAT|inframe_insertion	REV__PLXNA3|p.E402_G403insPWACGGGDSLRY|1|0.54|ENSG00000130827|chrX:154462199-154462200|-/CCCTGGGCATGTGGGGGTGGGGACAGTCTCAGATAT|inframe_insertion	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.314697265625	2	516.316035	1030.61752	-5.454	-0.002816	1.4276	0.00073712	-4.0264	-0.0020789	516.3166829666766	156.94	1.6079	155.39	155.01	156.62	-1.545					108	44	5	0	0	0	0.69895	1	15551	15551		18.324	0	1	509660	+		32385	29304	26653	26678	35701	35701					0.10343210236646883
LLPLHAFHP	9	Unmodified	_LLPLHAFHP_					0	0	0			REV__ENST00000564987.1_1_16:23541198-23555881:-|nuORF	REV__ENST00000564987.1_1_16:23541198-23555881:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	522.8007202148438	2	522.803094	1043.59164	-0.60564	-0.00031663	-3.6082	-0.0018864	-4.2138	-0.002203	522.8010421976496	33.203	1.3901	30.493	30.272	31.662	-2.7097					70	27	4	0	0	0	0.53728	1	1191	1191		39.021	0.21535	1	560900	+		32386	17613	26654	26679	35702	35702					0.07158360785024342
LLPLIEAS	8	Unmodified	_LLPLIEAS_					0	0	0		tr|A0A7D6VU24|A0A7D6VU24_9CLOTPhosphate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09970PE=3SV=1	tr|A0A7D6VU24|A0A7D6VU24_9CLOTPhosphate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09970PE=3SV=1	tr|A0A7D6VU24|A0A7D6VU24_9CLOTPhosphate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09970PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	428.2613830566406	2	428.262936	854.51132	-2.1797	-0.00093349	-0.96416	-0.00041291	-3.1439	-0.0013464	428.2624599299376	144.02	1.6837	143.79	143.2	144.88	-0.22697					114	33	5	0	0	0	0.74595	1	14463	14463		14.664	0	1	330270			32387	35158	26655	26680	35703	35703					0.07824454671322201
LLPLILPLLEL	11	Unmodified	_LLPLILPLLEL_					0	0	0		ENST00000466110.5_1_2:74592577-74593714:-|nuORF	ENST00000466110.5_1_2:74592577-74593714:-|nuORF	ENST00000466110.5_1_2:74592577-74593714:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	623.9169311523438	2	623.922875	1245.8312	-6.0051	-0.0037467	-3.9162	-0.0024434	-9.9213	-0.0061901	623.9202937363024	164.58	0.86269	163.17	162.86	163.73	-1.4083					55	31	2	0	0	0	0.7254	1	14382	14382		10.265	3.5297	1	34551			32388	12283	26656	26681	35704	35704					0.21811497892826992
LLPLKSSA	8	Unmodified	_LLPLKSSA_					0	0	0			REV__ENST00000389561.6_1_12:132551999-132562003:+|nuORF	REV__ENST00000389561.6_1_12:132551999-132562003:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	414.76165771484375	2	414.763104	827.511654	-0.47497	-0.000197	-2.6059	-0.0010808	-3.0808	-0.0012778	414.761930419043	140.08	2.1671	139.86	139.4	141.57	-0.22696					123	43	4	0	0	0	0.74971	1	14090	14090		26.796	0	1	474850	+		32389	25228	26657	26682	35705	35705					0.09099874391176854
LLPLLHPLL	9	Unmodified	_LLPLLHPLL_					0	0	0			REV__ENSG00000105576|ENST00000425528|TNPO2	REV__ENSG00000105576|ENST00000425528|TNPO2	MULTI-MSMS	OvCa99_classI_Rep5	1	514.8480224609375	2	514.846971	1027.67939	1.1367	0.00058524	1.2785	0.00065821	2.4152	0.0012435	514.8474315969277	146.52	1.1295	146.52	146.23	147.36	0					51	22	4	0	0	0	0.22187	1	17150	17150		72.62	0	1	258560	+		32390	17738	26658	26683	35706	35706					0.16665561655781858
LLPLLLLID	9	Unmodified	_LLPLLLLID_					0	0	0			REV__ENSG00000198189|ENST00000358290|HSD17B11	REV__ENSG00000198189|ENST00000358290|HSD17B11	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.8482360839844	2	511.846636	1021.67872	1.215	0.00062189	-2.7577	-0.0014115	-1.5427	-0.00078965	511.84514235689	85.522	2.0184	82.876	82.361	84.379	-2.6463					82	40	3	0	0	0	0.6926	1	7175	7175		20.482	1.1219	1	433590	+		32391	22999	26659	26684	35707	35707					0.16874722216084592
LLPLPLLLFLL	11	Unmodified	_LLPLPLLLFLL_					0	0	0		ENSG00000092009|ENST00000250378|CMA1	ENSG00000092009|ENST00000250378|CMA1	ENSG00000092009|ENST00000250378|CMA1	MULTI-SECPEP	OvCa9_classI_Rep3	3	632.4310913085938	2	632.935786	1263.85702	-6.4678	-0.0040937	0.68511	0.00043363	-5.7827	-0.00366	632.9358808201778	164.6	0.9166	163.19	162.89	163.81	-1.4083					56	33	2	0	0	0	0.026411	1	14379	14379		0.90815	0	1	63374			32392	1880	26660	26685	35708	35708					0.2356439213513113
LLPLRLARL	9	Unmodified	_LLPLRLARL_					0	0	0		ENST00000372920.1_1_20:43030124-43058302:+|nuORF;nc|ENSG00000101076|P41235-4|HNF4A	ENST00000372920.1_1_20:43030124-43058302:+|nuORF	ENST00000372920.1_1_20:43030124-43058302:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	532.7969970703125	2	532.868769	1063.72298	-1.2378	-0.00065958	0.76407	0.00040715	-0.47373	-0.00025243	532.8690744630526	114.75	1.0856	114.63	114.35	115.44	-0.11777					28	21	2	0	0	0	0.027462	1	10990	10990		30.504	0	1	24356			32393	10990	26661	26686	35709	35709					0.19367171152930496
LLPLVLLEL	9	Unmodified	_LLPLVLLEL_					0	0	0		nc|ENSG00000067182|P19438-4|TNFRSF1A;ENST00000535958.1_1_12:6443054-6450989:-|nuORF;ENST00000538363.1_1_12:6443236-6450989:-|nuORF;nc|ENSG00000067182|P19438-5|TNFRSF1A;ENSG00000067182|ENST00000162749|TNFRSF1A	nc|ENSG00000067182|P19438-4|TNFRSF1A;ENSG00000067182|ENST00000162749|TNFRSF1A	nc|ENSG00000067182|P19438-4|TNFRSF1A	MULTI-MSMS	OvCa9_classI_Rep2	2	511.8441162109375	2	511.846636	1021.67872	-0.43264	-0.00022145	-2.9108	-0.0014899	-3.3435	-0.0017113	511.8451091045373	98.476	2.5216	97.583	96.826	99.347	-0.89305					131	50	4	0	0	0	0.55698	1	8941	8941		37.028	0	1	744040			32394	14887;1369	26662	26687	35710	35710					0.16874722216084592
LLPMFPILP	9	Unmodified	_LLPMFPILP_					0	0	0			REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.81494140625	2	520.814282	1039.61401	0.66909	0.00034847	2.839	0.0014786	3.5081	0.0018271	520.8154998524576	110.61	1.1288	109.46	109.03	110.16	-1.1444					49	21	3	0	0	0	0.027462	1	8074	8074		49.211	1.2952	1	89409	+		32395	17249	26663	26688	35711	35711					0.09578824138452546
LLPMFPILP	9	Unmodified	_LLPMFPILP_					0	0	0			REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	REV__nc|ENSG00000091428|Q8WZA2-2|RAPGEF4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	520.814282	1039.61401	0.41067	0.00021388	3.0431	0.0015849	3.4538	0.0017988	520.8157410805322	109.51	1.1376	109.33	108.97	110.11	-0.17236	-0.089892	-7.1261E-05	NaN	49.211	57	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95449	+		32396	17249	26663	26688							0.09578824138452546
LLPMPMLLI	9	Unmodified	_LLPMPMLLI_					0	0	0		ENSG00000186881|ENST00000334726|OR13F1	ENSG00000186881|ENST00000334726|OR13F1	ENSG00000186881|ENST00000334726|OR13F1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.8148193359375	2	520.815967	1039.61738	0.25442	0.00013251	0.45901	0.00023906	0.71343	0.00037157	520.8158296712259	111.08	1.1574	109.48	108.96	110.12	-1.6011					54	21	4	0	0	0	0.027462	1	10305	10305		39.021	0	1	87823			32397	8371	26664	26689	35712	35712					0.09915750920799837
LLPNPLQPL	9	Unmodified	_LLPNPLQPL_					0	0	0			REV__ENST00000226004.7_1_17:41846454-41846622:-|nuORF	REV__ENST00000226004.7_1_17:41846454-41846622:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.81072998046875	2	502.810585	1003.60662	-1.9635	-0.00098725	1.532	0.0007703	-0.43148	-0.00021695	502.81109338443866	125	1.3243	123.61	123.18	124.5	-1.3908					63	25	4	0	0	0	0.27546	1	11877	11877		65.803	4.8312	1	89989	+		32398	23767	26665	26690	35713	35713					0.10495807862366746
LLPNPLQPL	9	Unmodified	_LLPNPLQPL_					0	0	0			REV__ENST00000226004.7_1_17:41846454-41846622:-|nuORF	REV__ENST00000226004.7_1_17:41846454-41846622:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	502.810585	1003.60662	-0.39385	-0.00019803	0.01322	6.6471E-06	-0.38063	-0.00019139	502.810401735777	123.51	1.2807	123.27	122.94	124.22	-0.23193	-0.20348	-4.6826E-05	NaN	65.803	55	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63556	+		32399	23767	26665	26690							0.10495807862366746
LLPNPLQPL	9	Unmodified	_LLPNPLQPL_					0	0	0			REV__ENST00000226004.7_1_17:41846454-41846622:-|nuORF	REV__ENST00000226004.7_1_17:41846454-41846622:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	502.810585	1003.60662	1.0905	0.0005483	-1.3564	-0.00068203	-0.26596	-0.00013373	502.80958929250903	124.6	1.4603	123.55	123.17	124.63	-1.0519	0.074329	-0.0014242	NaN	65.803	58	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87409	+		32400	23767	26665	26690							0.10495807862366746
LLPNPLTG	8	Unmodified	_LLPNPLTG_					0	0	0			REV__ENSG00000111676|ENST00000396684|ATN1;REV__ENSG00000142599|ENST00000400908|RERE	REV__ENSG00000142599|ENST00000400908|RERE	MULTI-MSMS	OvCa9_classI_Rep3	3	412.74591064453125	2	412.747453	823.480354	-0.0041108	-1.6967E-06	-3.0137	-0.0012439	-3.0178	-0.0012456	412.74611275073886	135.39	1.6252	134.28	133.62	135.24	-1.1076					83	32	4	0	0	0	0.75991	1	10934	10934		21.702	0	1	589310	+		32401	19793;18047	26666	26691	35714	35714					0.06155301357080134
LLPNTSPISP	10	Unmodified	_LLPNTSPISP_					0	0	0		ENSG00000166856|ENST00000300098|GPR182	ENSG00000166856|ENST00000300098|GPR182	ENSG00000166856|ENST00000300098|GPR182	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.7935180664062	2	519.795132	1037.57571	-0.39548	-0.00020557	-2.2434	-0.0011661	-2.6389	-0.0013717	519.7938318646319	121.84	4.0005	120.49	119.9	123.9	-1.3479					152	78	4	0	0	0	0.35465	1	11509	11509		74.255	0	1	769080			32402	6725	26667	26692	35715	35715					0.05842609757473838
LLPPAHIASPL	11	Unmodified	_LLPPAHIASPL_					0	0	0		ENST00000428675.5_1_2:198669485-198669611:+|nuORF	ENST00000428675.5_1_2:198669485-198669611:+|nuORF	ENST00000428675.5_1_2:198669485-198669611:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	564.8069458007812	2	564.842416	1127.67028	-0.82439	-0.00046565	1.3417	0.00075783	0.51726	0.00029217	564.8431822383241	90.259	0.66626	88.178	88.004	88.67	-2.0805					17	12	2	0	0	0	0.025853	1	5642	5642		27.882	13.017	1	11461			32403	11774	26668	26693	35716	35716					0.11155168299433171
LLPPGHVE	8	Unmodified	_LLPPGHVE_					0	0	0		ENST00000554610.1_2_14:65879917-66028150:+|nuORF	ENST00000554610.1_2_14:65879917-66028150:+|nuORF	ENST00000554610.1_2_14:65879917-66028150:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	430.7599182128906	2	431.245078	860.475603	-0.44712	-0.00019282	2.7449	0.0011837	2.2977	0.00099089	431.2458296604451	68.078	0.2371	68.078	67.955	68.192	0					8	5	2	0	0	0	0.028476	1	6392	6392		1.2052	0	1	101980			32404	13638	26669	26694	35717	35717					0.03978417214318597
LLPPKVPS	8	Unmodified	_LLPPKVPS_					0	0	0		tr|A0A7D7A2X2|A0A7D7A2X2_9CLOTPhagetailtapemeasureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10220PE=4SV=1	tr|A0A7D7A2X2|A0A7D7A2X2_9CLOTPhagetailtapemeasureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10220PE=4SV=1	tr|A0A7D7A2X2|A0A7D7A2X2_9CLOTPhagetailtapemeasureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10220PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	425.7750549316406	2	425.773471	849.53239	-0.95445	-0.00040638	4.1695	0.0017752	3.215	0.0013689	425.7751660668595	68.762	2.1455	66.142	65.721	67.866	-2.6203					132	42	5	0	0	0	0.74816	1	5452	5452		15.636	0.97212	1	3515300			32405	36093	26670	26695	35718	35718					0.10160464770854105
LLPPLFNI	8	Unmodified	_LLPPLFNI_					0	0	0		L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|137|3|sense	L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|137|3|sense	L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|137|3|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.2801818847656	2	463.789121	925.56369	-1.2586	-0.00058372	-3.355	-0.001556	-4.6136	-0.0021398	463.78744890351237	65.829	0.63036	62.343	62.13	62.761	-3.4854					18	12	2	0	0	0	0.028476	1	4744	4744		12.207	0	1	62357			32406	14711	26671	26696	35719	35719					0.0979303780494547
LLPPNDWLNP	10	Unmodified	_LLPPNDWLNP_					0	0	0			REV__ENSG00000236446|ENST00000371311|CT47B1	REV__ENSG00000236446|ENST00000371311|CT47B1	MULTI-SECPEP	OvCa9_classI_Rep3	3	589.3505859375	2	589.813856	1177.61316	-1.4517	-0.00085624	-0.746	-0.00044	-2.1977	-0.0012962	589.8130997643467	88.587	0.58131	86.456	86.265	86.846	-2.1309					18	11	2	0	0	0	0.026665	1	5401	5401		26.693	0	1	16248	+		32407	23411	26672	26697	35720	35720					0.031457010230724336
LLPPPPCPA	9	Unmodified	_LLPPPPCPA_					0	0	0		nc|ENSG00000001036|Q9BTY2-2|FUCA2;ENST00000367585.1_1_6:143823176-143832783:-|nuORF;ENSG00000182450|ENST00000422670|KCNK4;nc|ENSG00000182450|Q9NYG8-2|KCNK4;ENSG00000001036|ENST00000002165|FUCA2	nc|ENSG00000001036|Q9BTY2-2|FUCA2	nc|ENSG00000001036|Q9BTY2-2|FUCA2	MULTI-MSMS	OvCa99_classI_Rep5	1	452.7518615722656	2	452.751682	903.48881	-1.435	-0.00064968	-0.064099	-2.9021E-05	-1.4991	-0.0006787	452.75149241160483	103.79	2.0978	103.79	103.34	105.44	0					119	48	3	0	0	0	0.22187	1	11714	11714		72.62	17.116	1	1280500			32408	802	26673	26698	35721	35721					0.03320532002044274
LLPPPPTAVT	10	Unmodified	_LLPPPPTAVT_					0	0	0			REV__nc|ENSG00000116731|Q13029-2|PRDM2	REV__nc|ENSG00000116731|Q13029-2|PRDM2	MULTI-SECPEP	OvCa9_classI_Rep2	2	503.77880859375	2	503.302593	1004.59063	-3.151	-0.0015859	-1.3208	-0.00066477	-4.4718	-0.0022506	503.30168050028055	36.837	0.39435	34.127	33.992	34.386	-2.7097					14	7	3	0	0	0	0.027021	1	1609	1609		29.15	12.676	1	11131	+		32409	18317	26674	26699	35722	35722					0.08852101625450359
LLPPTSGLI	9	Unmodified	_LLPPTSGLI_					0	0	0		ENST00000368324.4_1_1:155854169-155854304:+|nuORF	ENST00000368324.4_1_1:155854169-155854304:+|nuORF	ENST00000368324.4_1_1:155854169-155854304:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	455.78436279296875	2	455.784036	909.553519	-1.7571	-0.00080087	1.8357	0.00083669	0.07859	3.582E-05	455.78473553781197	126.61	0.98457	125.19	124.83	125.81	-1.4143					28	19	2	0	0	0	0.57242	1	12050	12050		35.201	1.6851	1	32663			32410	10867	26675	26700	35723	35723					0.09512430079701062
LLPPTSGLI	9	Unmodified	_LLPPTSGLI_					0	0	0		ENST00000368324.4_1_1:155854169-155854304:+|nuORF	ENST00000368324.4_1_1:155854169-155854304:+|nuORF	ENST00000368324.4_1_1:155854169-155854304:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	455.784036	909.553519	1.8022	0.0008214	-1.7133	-0.00078089	0.088874	4.0508E-05	455.78309764797365	125.49	0.69353	125.25	124.96	125.65	-0.2359	0.032478	-0.00085535	NaN	35.201	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29253			32411	10867	26675	26700							0.09512430079701062
LLPPTSGLI	9	Unmodified	_LLPPTSGLI_					0	0	0		ENST00000368324.4_1_1:155854169-155854304:+|nuORF	ENST00000368324.4_1_1:155854169-155854304:+|nuORF	ENST00000368324.4_1_1:155854169-155854304:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	455.784036	909.553519	1.43	0.00065178	-1.2319	-0.00056149	0.19808	9.0283E-05	455.78328580492314	126.28	0.83984	125.21	124.86	125.7	-1.0715	-0.0071026	-0.00041656	NaN	35.201	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27661			32412	10867	26675	26700							0.09512430079701062
LLPPYTGAEM	10	Unmodified	_LLPPYTGAEM_					0	0	0			REV__ENST00000257527.8_2_5:156907472-156907574:-|nuORF	REV__ENST00000257527.8_2_5:156907472-156907574:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.2769165039062	2	546.275718	1090.53688	-0.69095	-0.00037745	3.2295	0.0017642	2.5385	0.0013867	546.2773590007274	127.91	1.6271	126.47	126.19	127.81	-1.4357					62	31	4	0	0	0	0.50656	1	12222	12222		53.351	0	1	153590	+		32413	23900	26676	26701	35724	35724					-0.004764388685543963
LLPQKGMLL	9	Unmodified	_LLPQKGMLL_					0	0	0		ENST00000379598.9_1_20:3786205-3786352:+|nuORF	ENST00000379598.9_1_20:3786205-3786352:+|nuORF	ENST00000379598.9_1_20:3786205-3786352:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.802490234375	2	506.814813	1011.61507	-0.030023	-1.5216E-05	-1.4562	-0.00073802	-1.4862	-0.00075324	507.31448518948986	60.781	0.55074	60.781	60.477	61.028	0					23	12	3	0	0	0	0.027462	1	5298	5298		26.796	0	1	268450			32414	11130	26677	26702	35725	35725					0.1097303850734761
LLPQPVLA	8	Unmodified	_LLPQPVLA_					0	0	0		ENST00000493195.5_1_1:159899139-159902434:-|nuORF;ENST00000496645.5_1_1:159897137-159899822:-|nuORF;nc|ENSG00000085552|Q9P2J2-2|IGSF9;ENSG00000085552|ENST00000368094|IGSF9	ENST00000493195.5_1_1:159899139-159902434:-|nuORF	ENST00000493195.5_1_1:159899139-159902434:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	425.7752990722656	2	425.773471	849.53239	-0.95445	-0.00040638	4.1695	0.0017752	3.215	0.0013689	425.7751660668595	68.762	2.1455	66.142	65.721	67.866	-2.6203					132	42	5	0	0	0	0.74816	2	5427	5427;5466		21.702	1.2205	1	3515300			32415	1733	26678	26703	35726;35727	35726					0.10160464770842736
LLPQVNSIGLI	11	Unmodified	_LLPQVNSIGLI_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	OvCa9_classI_Rep2	2	583.858642578125	2	583.860806	1165.70706	-4.259	-0.0024867	1.0102	0.0005898	-3.2489	-0.0018969	583.8612282732444	154.9	1.2136	154.67	154.34	155.56	-0.22696					82	33	4	0	0	0	0.71191	1	15798	15798		25.574	4.6271	1	148650	+		32416	28906	26679	26704	35728	35728					0.13083420125371958
LLPQVPSA	8	Unmodified	_LLPQVPSA_					0	0	0		ENST00000495396.5_1_1:204956439-204985664:+|nuORF	ENST00000495396.5_1_1:204956439-204985664:+|nuORF	ENST00000495396.5_1_1:204956439-204985664:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	412.74652099609375	2	412.747453	823.480354	0.75275	0.0003107	-3.7611	-0.0015524	-3.0083	-0.0012417	412.74581316945023	134.99	1.618	134.76	134.29	135.91	-0.22696					65	32	3	0	0	0	0.75915	1	13354	13354		20.482	0	1	284470			32417	12774	26680	26705	35729	35729					0.06155301357091503
LLPRALVRASA	11	Unmodified	_LLPRALVRASA_					0	0	0		ENST00000556440.6_2_17:62503037-62503232:+|nuORF	ENST00000556440.6_2_17:62503037-62503232:+|nuORF	ENST00000556440.6_2_17:62503037-62503232:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	583.6871337890625	2	583.87204	1165.72953	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.244	1	18.905	18.405	19.405	-1.3386								0	0	0	0.19474	1	28	28		24.519	0	1				32418	13660	26681	26706	35730	35730					0.15329064313641538
LLPRKESNI	9	Unmodified	_LLPRKESNI_					0	0	0		ENSG00000051341|ENST00000264233|POLQ;nc|ENSG00000051341|O75417-2|POLQ	ENSG00000051341|ENST00000264233|POLQ	ENSG00000051341|ENST00000264233|POLQ	MULTI-SECPEP	OvCa9_classI_Rep3	3	534.7778930664062	2	535.321848	1068.62914	0.32015	0.00017138	-0.55131	-0.00029513	-0.23116	-0.00012375	535.3212073033413	75.457	0.54898	73.046	72.679	73.228	-2.4106					15	10	2	0	0	0	0.027462	1	3839	3839		26.693	0	1	38047			32419	1186	26682	26707	35731	35731					0.09757407259985484
LLPRKKAH	8	Unmodified	_LLPRKKAH_					0	0	0		ENSG00000198780|ENST00000687041|FAM169A	ENSG00000198780|ENST00000687041|FAM169A	ENSG00000198780|ENST00000687041|FAM169A	MULTI-MSMS	OvCa99_classI_Rep5	1	481.8132629394531	2	481.816536	961.618519	0.63652	0.00030669	-4.3932	-0.0021167	-3.7567	-0.0018101	481.81479588639235	160.92	2.1046	160.92	159.66	161.77	0					71	41	3	0	0	0	0.74595	2	18925	18781;18925		28.254	1.4582	1	146960			32420	8871	26683	26708	35732;35733	35733					0.1361746939621753
LLPRNLLVQ	9	Unmodified	_LLPRNLLVQ_					0	0	0		ENST00000438808.1_1_1:11938291-11938936:+|nuORF	ENST00000438808.1_1_1:11938291-11938936:+|nuORF	ENST00000438808.1_1_1:11938291-11938936:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	533.3400268554688	2	533.342584	1064.67061	-5.4005	-0.0028803	1.293	0.00068962	-4.1075	-0.0021907	533.3431631989303	156.44	1.0857	156.21	155.92	157	-0.22696					71	26	4	0	0	0	0.61208	1	15946	15946		30.504	0	1	260540			32421	11904	26684	26709	35734	35734					0.1408658801931324
LLPRPARLL	9	Unmodified	_LLPRPARLL_					0	0	0		ENST00000342665.4_2_20:307600-308011:+|nuORF	ENST00000342665.4_2_20:307600-308011:+|nuORF	ENST00000342665.4_2_20:307600-308011:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.853759765625	2	524.853119	1047.69168	-0.029776	-1.5628E-05	-0.46	-0.00024143	-0.48978	-0.00025706	524.8527467753042	97.776	1.3152	95.397	95.065	96.38	-2.3786					60	25	3	0	0	0	0.44294	2	8693	8674;8693		47.916	14.4	1	216170			32422	10583	26685	26710	35735;35736	35736					0.1697459811882709
LLPRPARLL	9	Unmodified	_LLPRPARLL_					0	0	0		ENST00000342665.4_2_20:307600-308011:+|nuORF	ENST00000342665.4_2_20:307600-308011:+|nuORF	ENST00000342665.4_2_20:307600-308011:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	524.853119	1047.69168	-1.034	-0.00054269	0.87667	0.00046012	-0.1573	-8.2562E-05	524.8534132944861	97.218	1.5188	95.459	95.053	96.572	-1.7595	0.030701	0.00072531	NaN	47.916	65	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	239390			32423	10583	26685	26710							0.1697459811882709
LLPRRPKR	8	Unmodified	_LLPRRPKR_					0	0	0		ENST00000416823.1_1_22:29702661-29703048:+|nuORF	ENST00000416823.1_1_22:29702661-29703048:+|nuORF	ENST00000416823.1_1_22:29702661-29703048:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.7800903320312	2	518.348535	1034.68252	-1.153	-0.00059763	0.5975	0.00030971	-0.55545	-0.00028792	518.3487002778534	41.051	0.88185	38.096	37.789	38.671	-2.9541					27	16	2	0	0	0	0.028476	1	1873	1873		18.324	0	1	13274			32424	11614	26686	26711	35737	35737					0.1665624955317071
LLPRTLTLL	9	Unmodified	_LLPRTLTLL_					0	0	0			REV__ENST00000551766.5_1_16:22447080-22448506:-|nuORF	REV__ENST00000551766.5_1_16:22447080-22448506:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3470458984375	2	520.347335	1038.68012	1.3364	0.00069541	-1.6775	-0.00087287	-0.34103	-0.00017745	520.346442572037	129.27	2.7244	129.04	128.62	131.35	-0.22697					153	54	5	0	0	0	0.13482	1	12669	12669		87.754	5.5138	1	2451300	+		32425	27487	26687	26712	35738	35738					0.1623235630486306
LLPRTLTLL	9	Unmodified	_LLPRTLTLL_					0	0	0			REV__ENST00000551766.5_1_16:22447080-22448506:-|nuORF	REV__ENST00000551766.5_1_16:22447080-22448506:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	520.3468627929688	2	520.347335	1038.68012	0.45282	0.00023562	-0.76983	-0.00040058	-0.31702	-0.00016496	520.346854726536	130.58	2.2687	129.46	129.13	131.39	-1.1166					144	45	5	0	0	0	0.3076	1	10433	10433		62.107	1.1355	1	1601100	+		32426	27487	26687	26712	35739	35739					0.1623235630486306
LLPRTLTLL	9	Unmodified	_LLPRTLTLL_					0	0	0			REV__ENST00000551766.5_1_16:22447080-22448506:-|nuORF	REV__ENST00000551766.5_1_16:22447080-22448506:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.3462524414062	2	520.347335	1038.68012	2.9948	0.0015583	-3.7019	-0.0019263	-0.70713	-0.00036795	520.3453507640438	130.94	2.3528	129.46	129.06	131.41	-1.4779					149	47	5	0	0	0	0.10363	1	12585	12585		96.19	16.478	1	2675200	+		32427	27487	26687	26712	35740	35740					0.1623235630486306
LLPSPQPQLK	10	Unmodified	_LLPSPQPQLK_					0	0	0			REV__ERCC6L|p.P750L|1|0.07|ENSG00000186871|chrX:72206518-72206518|G/A|missense_variant	REV__ERCC6L|p.P750L|1|0.07|ENSG00000186871|chrX:72206518-72206518|G/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	560.8048706054688	2	560.839874	1119.66519	1.9559	0.001097	-2.387	-0.0013388	-0.43114	-0.0002418	560.8385307990803	97.418	0.81609	95.039	94.859	95.675	-2.3786					28	15	3	0	0	0	0.026915	1	8687	8687		27.882	4.8398	1	65678	+		32428	28115	26688	26713	35741	35741					0.11014864436833705
LLPSRLPAV	9	Unmodified	_LLPSRLPAV_					0	0	0		ENST00000482806.5_1_7:150774217-150777853:-|nuORF	ENST00000482806.5_1_7:150774217-150777853:-|nuORF	ENST00000482806.5_1_7:150774217-150777853:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.2873229980469	2	483.310752	964.606951	-0.063346	-3.0616E-05	-0.093183	-4.5036E-05	-0.15653	-7.5652E-05	483.31057566270505	98.375	1.4885	95.996	95.773	97.262	-2.3786					38	28	2	0	0	0	0.027462	1	8849	8849		44.117	7.0883	1	81720			32429	12578	26689	26714	35742	35742					0.12323227582214713
LLPSRLPAV	9	Unmodified	_LLPSRLPAV_					0	0	0		ENST00000482806.5_1_7:150774217-150777853:-|nuORF	ENST00000482806.5_1_7:150774217-150777853:-|nuORF	ENST00000482806.5_1_7:150774217-150777853:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	483.310752	964.606951	0.0088239	4.2647E-06	0.12713	6.1441E-05	0.13595	6.5706E-05	483.3107028818569	97.048	0.93333	96.089	95.728	96.661	-0.95857	0.043248	-1.0278E-05	NaN	44.117	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61317			32430	12578	26689	26714							0.12323227582214713
LLPSRLPAV	9	Unmodified	_LLPSRLPAV_					0	0	0		ENST00000482806.5_1_7:150774217-150777853:-|nuORF	ENST00000482806.5_1_7:150774217-150777853:-|nuORF	ENST00000482806.5_1_7:150774217-150777853:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	483.310752	964.606951	-0.58425	-0.00028237	0.49939	0.00024136	-0.084854	-4.1011E-05	483.31089776841543	97.812	0.91282	96.052	95.865	96.778	-1.7595	0.0063728	0.00034956	NaN	44.117	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78939			32431	12578	26689	26714							0.12323227582214713
LLPSRQFGF	9	Unmodified	_LLPSRQFGF_					0	0	0		ENST00000569365.6_1_16:18794333-18800349:-|nuORF;ENSG00000134419|ENST00000322989|RPS15A	ENST00000569365.6_1_16:18794333-18800349:-|nuORF	ENST00000569365.6_1_16:18794333-18800349:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	532.7997436523438	2	532.798009	1063.58147	1.0847	0.00057795	1.9539	0.001041	3.0386	0.001619	532.7990838303	101.38	1.3598	101.38	101.06	102.42	0					77	31	4	0	0	0	0.55011	1	11260	11260		37.812	2.1932	1	8485900			32432	4295	26690	26715	35743	35743					0.05221753059799994
LLPTAEIYGS	10	Unmodified	_LLPTAEIYGS_					0	0	0			REV__nc|ENSG00000005448|Q9H977-3|WDR54	REV__nc|ENSG00000005448|Q9H977-3|WDR54	MULTI-MSMS	OvCa9_classI_Rep2	2	532.2838745117188	2	532.28714	1062.55973	-4.5287	-0.0024106	-1.4834	-0.00078959	-6.0121	-0.0032002	532.2861235553668	152.16	0.83319	151.93	151.65	152.48	-0.22696					32	16	3	0	0	0	0.65434	1	15454	15454		35.618	1.4457	1	70988	+		32433	28701	26691	26716	35744	35744					0.030949035205594555
LLPTAIRGNP	10	Unmodified	_LLPTAIRGNP_					0	0	0			REV__nc|ENSG00000118961|Q9H6V9-4|LDAH	REV__nc|ENSG00000118961|Q9H6V9-4|LDAH	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.3184814453125	2	526.316566	1050.61858	0.61426	0.0003233	-1.5094	-0.0007944	-0.8951	-0.00047111	526.3156249787964	86.116	1.9942	83.47	83.091	85.086	-2.6463					99	39	4	0	0	0	0.42962	1	7269	7269		64.207	20.09	1	546980	+		32434	18422	26692	26717	35745	35745					0.09529424605557324
LLPTRLLLT	9	Unmodified	_LLPTRLLLT_					0	0	0		ENST00000525250.5_1_11:820874-821186:+|nuORF	ENST00000525250.5_1_11:820874-821186:+|nuORF	ENST00000525250.5_1_11:820874-821186:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	520.34716796875	2	520.347335	1038.68012	1.3364	0.00069541	-1.6775	-0.00087287	-0.34103	-0.00017745	520.346442572037	129.27	2.7244	129.04	128.62	131.35	-0.22697					153	54	5	0	0	0	0.38969	1	12841	12841		52.937	14.131	1	2451300			32435	13184	26693	26718	35746	35746					0.16232356304840323
LLPTTHGTSV	10	Unmodified	_LLPTTHGTSV_					0	0	0			REV__nc|ENSG00000145113|Q99102-2|MUC4;REV__nc|ENSG00000145113|Q99102-17|MUC4	REV__nc|ENSG00000145113|Q99102-2|MUC4	MULTI-MSMS	OvCa99_classI_Rep5	1	513.2886352539062	2	513.284931	1024.55531	3.0686	0.0015751	2.5567	0.0013123	5.6253	0.0028874	513.2861142691663	88.015	1.3753	88.015	87.628	89.004	0					113	32	6	0	0	0	0.58282	1	9346	9346		44.117	2.6902	1	11224000	+		32436	28912;19951	26694	26719	35747	35747					0.044014390976599316
LLPTVLRATGL	11	Unmodified	_LLPTVLRATGL_					0	0	0		SLC22A14|p.L555Sfs*17|1|0.31|ENSG00000144671|chr3:38316452-38316452|C/-|frameshift_variant;ENSG00000144671|ENST00000448498|SLC22A14	SLC22A14|p.L555Sfs*17|1|0.31|ENSG00000144671|chr3:38316452-38316452|C/-|frameshift_variant	SLC22A14|p.L555Sfs*17|1|0.31|ENSG00000144671|chr3:38316452-38316452|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	577.368896484375	2	577.368798	1152.72304	0.41999	0.00024249	-0.64357	-0.00037158	-0.22358	-0.00012909	577.3683674642078	126.91	1.704	125.83	125.44	127.14	-1.0715					108	32	5	0	0	0	0.71789	1	9974	9974		23.523	1.5628	1	1015500			32437	5172	26695	26720	35748	35748					0.15279126362247553
LLPVHLCL	8	Unmodified	_LLPVHLCL_					0	0	0		ENST00000547685.5_1_12:56231631-56233583:-|nuORF	ENST00000547685.5_1_12:56231631-56233583:-|nuORF	ENST00000547685.5_1_12:56231631-56233583:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	454.2734680175781	2	454.275324	906.536095	1.801	0.00081817	-2.8847	-0.0013104	-1.0837	-0.00049228	454.27380927346303	133.24	0.63763	133.24	132.99	133.63	0					24	13	2	0	0	0	0.69862	1	15497	15497		43.626	0	1	121610			32438	13553	26696	26721	35749	35749					0.07908811273046013
LLPVHSLDVL	10	Unmodified	_LLPVHSLDVL_					0	0	0			REV__tr|A0A553SU35|A0A553SU35_NIACIXyloseisomerase-likeTIMbarreldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06265PE=4SV=1	REV__tr|A0A553SU35|A0A553SU35_NIACIXyloseisomerase-likeTIMbarreldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06265PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	553.3314819335938	2	553.334424	1104.6543	-5.4992	-0.0030429	1.7092	0.00094578	-3.7899	-0.0020971	553.3351787520976	152.55	1.4112	151.58	151.19	152.61	-0.97301					72	28	4	0	0	0	0.7759	1	13047	13047		21.96	0	1	153020	+		32439	31034	26697	26722	35750	35750					0.10615462062560255
LLPVLLPRL	9	Unmodified	_LLPVLLPRL_					0	0	0		ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3596801757812	2	517.360245	1032.70594	0.038556	1.9947E-05	-0.44941	-0.00023251	-0.41085	-0.00021256	517.3599133873521	135.24	1.9126	135.01	134.59	136.5	-0.22696					104	38	4	0	0	0	0.37146	1	13414	13414		54.765	1.4132	1	602160			32440	818	26698	26723	35751	35751					0.1908925054710835
LLPVLLPRL	9	Unmodified	_LLPVLLPRL_					0	0	0		ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.3594360351562	2	517.360245	1032.70594	1.8735	0.00096925	-2.5299	-0.0013089	-0.65645	-0.00033962	517.3588470360384	137.04	2.3917	135.5	135.08	137.47	-1.5437					132	51	5	0	0	0	0.39645	1	13360	13360		52.299	2.2746	1	756000			32441	818	26698	26723	35752	35752					0.1908925054710835
LLPVLVHTF	9	Unmodified	_LLPVLVHTF_					0	0	0		nc|ENSG00000173171|Q13505-3|MTX1;ENSG00000173171|ENST00000368376|MTX1;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000481771.5_1_1:155181647-155183486:+|nuORF	nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF	nc|ENSG00000173171|Q13505-3|MTX1	MULTI-MSMS	OvCa99_classI_Rep5	1	519.8219604492188	2	519.820953	1037.62735	0.52864	0.0002748	0.98613	0.00051261	1.5148	0.00078741	519.8212947843768	124.31	0.96703	124.31	124.01	124.98	0					37	20	3	0	0	0	0.50066	1	14351	14351		42.474	0	1	173500			32442	7355;12551	26699	26724	35753	35753					0.11004398242016578
LLPVVISD	8	Unmodified	_LLPVVISD_					0	0	0		ENSG00000113361|ENST00000265071|CDH6;nc|ENSG00000113361|P55285-2|CDH6;ENST00000503958.1_1_5:24487774-24493064:-|nuORF;ENSG00000040731|ENST00000264463|CDH10	ENSG00000113361|ENST00000265071|CDH6;ENSG00000040731|ENST00000264463|CDH10	ENSG00000040731|ENST00000264463|CDH10	MULTI-MSMS	OvCa9_classI_Rep4_	4	428.2613220214844	2	428.262936	854.51132	-0.2241	-9.5974E-05	-2.8688	-0.0012286	-3.0929	-0.0013246	428.2616025856162	144.91	1.2947	143.47	143.1	144.39	-1.4357					70	24	4	0	0	0	0.75724	1	14190	14190		23.037	3.6767	1	398580			32443	2968;1115	26700	26725	35754	35754					0.0782445467133357
LLPVWGSQS	9	Unmodified	_LLPVWGSQS_					0	0	0			REV__ENST00000447443.1_1_16:58549735-58552314:+|nuORF	REV__ENST00000447443.1_1_16:58549735-58552314:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.7882995605469	2	493.768917	985.523281	0.78067	0.00038547	-0.9916	-0.00048962	-0.21094	-0.00010415	493.7683008416261	97.689	0.95695	95.31	95.065	96.022	-2.3786					28	18	2	0	0	0	0.027462	1	8740	8740		10.265	0	1	69154	+		32444	17590	26701	26726	35755	35755					0.029940714145254788
LLPWLLPT	8	Unmodified	_LLPWLLPT_					0	0	0			REV__nc|ENSG00000130202|Q92692-2|NECTIN2	REV__nc|ENSG00000130202|Q92692-2|NECTIN2	MULTI-MSMS	OvCa9_classI_Rep2	2	476.7950439453125	2	476.796946	951.57934	-0.04183	-1.9945E-05	-4.4814	-0.0021367	-4.5233	-0.0021567	476.7946913581807	110.41	1.5792	110.23	109.96	111.54	-0.17237					69	31	3	0	0	0	0.72134	1	10389	10389		39.021	0.21535	1	711390	+		32445	18929	26702	26727	35756	35756					0.10161324321984466
LLPYVVDMR	9	Unmodified	_LLPYVVDMR_					0	0	0			REV__nc|ENSG00000206417|Q4G0G2|H1-10-AS1	REV__nc|ENSG00000206417|Q4G0G2|H1-10-AS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.8388061523438	2	553.307352	1104.60015	2.5424	0.0014067	-1.0563	-0.00058447	1.4861	0.00082227	553.3066115025629	108.02	0.25401	108.02	107.86	108.11	0					7	5	2	0	0	0	0.027462	1	12215	12215		31.955	0	1	186150	+		32446	25220	26703	26728	35757	35757					0.052035466393363095
LLQAQAVPTLL	11	Unmodified	_LLQAQAVPTLL_					0	0	0			REV__ENST00000316846.2_11:65545618-65547282:-|nuORF	REV__ENST00000316846.2_11:65545618-65547282:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	583.858642578125	2	583.860806	1165.70706	-4.259	-0.0024867	1.0102	0.0005898	-3.2489	-0.0018969	583.8612282732444	154.9	1.2136	154.67	154.34	155.56	-0.22696					82	33	4	0	0	0	0.65947	1	15786	15786		39.253	6.4404	1	148650	+		32447	23517	26704	26729	35758	35758					0.13083420125371958
LLQASVITLYT	11	Unmodified	_LLQASVITLYT_					0	0	0		ENST00000491976.1_1_1:31888748-31907043:+|nuORF;ENSG00000168528|ENST00000373709|SERINC2;nc|ENSG00000168528|Q96SA4-3|SERINC2;nc|ENSG00000168528|Q96SA4-2|SERINC2;nc|ENSG00000168528|Q96SA4-4|SERINC2;ZCCHC17-SERINC2|1|fusion	ENST00000491976.1_1_1:31888748-31907043:+|nuORF	ENST00000491976.1_1_1:31888748-31907043:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3561401367188	2	611.358096	1220.70164	-3.1571	-0.0019301	-0.12375	-7.5658E-05	-3.2809	-0.0020058	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.71789	1	12719	12719		23.523	0.48021	1	666990			32448	6918	26705	26730	35759	35759					0.1001169654291516
LLQCQGHGAP	10	Unmodified	_LLQCQGHGAP_					0	0	0		ENST00000534359.1_1_11:3690561-3692570:-|nuORF	ENST00000534359.1_1_11:3690561-3692570:-|nuORF	ENST00000534359.1_1_11:3690561-3692570:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	512.2545166015625	2	512.255651	1022.49675	-0.86994	-0.00044563	-3.1739	-0.0016259	-4.0439	-0.0020715	512.2539630058868	86.701	3.116	84.524	83.979	87.095	-2.1768					189	61	5	0	0	0	0.49049	1	5150	5150		55.504	6.2934	1	2198600			32449	13355	26706	26731	35760	35760					-0.013599407484548465
LLQCWLDRQ	9	Unmodified	_LLQCWLDRQ_					0	0	0		ENST00000574767.5_1_17:78704403-78727934:+|nuORF	ENST00000574767.5_1_17:78704403-78727934:+|nuORF	ENST00000574767.5_1_17:78704403-78727934:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	588.3488159179688	2	587.805508	1173.59646	0.44059	0.00025898	0.8153	0.00047924	1.2559	0.00073822	587.8061331086482	33.444	0.69248	30.655	30.359	31.051	-2.7881					20	13	2	0	0	0	0.027462	1	862	862		16.473	0	1	21080			32450	13935	26707	26732	35761	35761					0.016608768654577943
LLQDGYHLD	9	Unmodified	_LLQDGYHLD_					0	0	0		ENST00000566894.1_1_15:75194962-75197073:-|nuORF;ENSG00000178761|ENST00000357635|FAM219B	ENST00000566894.1_1_15:75194962-75197073:-|nuORF	ENST00000566894.1_1_15:75194962-75197073:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	537.2723388671875	2	537.266739	1072.51892	2.6082	0.0014013	3.1803	0.0017087	5.7886	0.00311	537.2684896382216	88.872	4.5522	88.872	88.003	92.555	0					290	110	5	0	0	0	0.40667	1	9503	9503		51.335	0.14276	1	72679000			32451	7772	26708	26733	35762	35762					-0.014434377990482972
LLQDKQFEL	9	Unmodified	_LLQDKQFEL_					0	0	0		VPS39|p.E652Gfs*5|1|0.17|ENSG00000166887|chr15:42164462-42164463|-/C|frameshift_variant;ENSG00000166887|ENST00000318006|VPS39;nc|ENSG00000166887|Q96JC1|VPS39;ENST00000570023.1_1_15:42465909-42470478:-|nuORF;ENST00000568029.5_1_15:42462052-42470793:-|nuORF	VPS39|p.E652Gfs*5|1|0.17|ENSG00000166887|chr15:42164462-42164463|-/C|frameshift_variant	VPS39|p.E652Gfs*5|1|0.17|ENSG00000166887|chr15:42164462-42164463|-/C|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	567.3167724609375	2	567.313689	1132.61282	2.2167	0.0012576	-0.84295	-0.00047822	1.3738	0.00077935	567.313122936824	98.06	0.63825	98.06	97.823	98.461	0					37	14	4	0	0	0	0.027568	1	10788	10788		138.06	3.2516	1	2273200			32452	6729	26709	26734	35763	35763					0.05182281303223135
LLQDLKFVPS	10	Unmodified	_LLQDLKFVPS_					0	0	0		ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.78466796875	2	580.339707	1158.66486	0.40546	0.0002353	3.689	0.0021409	4.0944	0.0023762	580.3413791153871	158.68	0.48308	158.68	158.51	158.99	0					18	9	2	0	0	0	0.026659	1	18632	18632		37.812	0	1	33289			32453	4291	26710	26735	35764	35764					0.09187444717008475
LLQDQRLVG	9	Unmodified	_LLQDQRLVG_					0	0	0		nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	nc|ENSG00000189077|Q9BXJ8-2|TMEM120A	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.8395385742188	2	521.306198	1040.59784	-1.4144	-0.00073731	1.034	0.00053902	-0.38038	-0.0001983	521.3067937777224	37.136	0.45746	37.136	36.84	37.298	0					12	9	2	0	0	0	0.027462	1	1996	1996		38.806	8.3025	1	35806			32454	15234	26711	26736	35765	35765					0.07916834225898128
LLQDYVEE	8	Unmodified	_LLQDYVEE_					0	0	0		tr|A0A553SF37|A0A553SF37_NIACIHADfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_08160PE=4SV=1	tr|A0A553SF37|A0A553SF37_NIACIHADfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_08160PE=4SV=1	tr|A0A553SF37|A0A553SF37_NIACIHADfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_08160PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.79644775390625	2	504.747847	1007.48114	0.16386	8.2707E-05	0.2802	0.00014143	0.44406	0.00022414	504.7479706386391	52.685	0.26234	52.685	52.566	52.828	0					8	5	2	0	0	0	0.028476	1	4139	4139		79.451	10.966	1	224530			32455	32987	26712	26737	35766	35766					-0.022299487845202748
LLQFLRLVG	9	Unmodified	_LLQFLRLVG_					0	0	0		nc|ENSG00000111906|Q7Z4H3-3|HDDC2;ENST00000609574.1_1_6:125621682-125623108:-|nuORF;nc|ENSG00000111906|Q7Z4H3-2|HDDC2;ENSG00000111906|ENST00000398153|HDDC2	nc|ENSG00000111906|Q7Z4H3-3|HDDC2	nc|ENSG00000111906|Q7Z4H3-3|HDDC2	MULTI-SECPEP	OvCa9_classI_Rep2	2	530.791259765625	2	529.839677	1057.6648	-2.5435	-0.0013476	-2.6899	-0.0014252	-5.2333	-0.0027728	529.8381528676874	63.037	0.63303	60.293	59.847	60.48	-2.7444					16	11	2	0	0	0	0.027462	1	4703	4703		3.6843	0	1	11427			32456	2864	26713	26738	35767	35767					0.13827489507639257
LLQFSSLNP	9	Unmodified	_LLQFSSLNP_					0	0	0			REV__tr|A0A553STQ2|A0A553STQ2_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05600PE=3SV=1	REV__tr|A0A553STQ2|A0A553STQ2_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05600PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.8127136230469	2	509.782025	1017.5495	2.5833	0.0013169	0.77938	0.00039731	3.3627	0.0017142	509.7826597163162	106.18	0.35077	106.18	106.05	106.41	0					10	7	2	0	0	0	0.027462	1	11966	11966		34.173	3.6689	1	83619	+		32457	30995	26714	26739	35768	35768					0.04142340585997317
LLQHQASL	8	Unmodified	_LLQHQASL_					0	0	0		ENSG00000083814|ENST00000317398|ZNF671	ENSG00000083814|ENST00000317398|ZNF671	ENSG00000083814|ENST00000317398|ZNF671	MULTI-SECPEP	OvCa99_classI_Rep5	1	454.7136535644531	2	455.261259	908.507966	-0.86099	-0.00039198	-2.5259	-0.0011499	-3.3868	-0.0015419	455.26131640829715	34.667	0.80162	34.667	34.444	35.246	0					22	16	2	0	0	0	0.028476	1	1706	1706		45.952	0	1	47084			32458	1702	26715	26740	35769	35769					0.050052046173163944
LLQKEHILWFW	11	Unmodified	_LLQKEHILWFW_					0	0	0			REV__nc|ENSG00000164877|Q8IY33-3|MICALL2	REV__nc|ENSG00000164877|Q8IY33-3|MICALL2	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.8263244628906	3	504.950245	1511.82891	-1.1402	-0.00057575	2.7268	0.0013769	1.5866	0.00080113	504.95156721218586	77.699	2.3004	75.346	75.047	77.348	-2.3527					139	45	5	0	0	0	0.025995	1	4052	4052		17.833	6.3785	1	1069000	+		32459	26205	26716	26741	35770	35770					0.09346462207736295
LLQKLHRSL	9	Unmodified	_LLQKLHRSL_					0	0	0			REV__ENST00000531580.1_1_11:9168571-9172264:-|nuORF	REV__ENST00000531580.1_1_11:9168571-9172264:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.2955322265625	2	554.353483	1106.69241	0.95436	0.00052905	4.2187	0.0023387	5.1731	0.0028677	554.3549624414246	131.99	1.0806	131.99	131.72	132.8	0					33	22	3	0	0	0	0.027462	1	15387	15387		42.396	9.5837	1	76537	+		32460	22397	26717	26742	35771	35771					0.14333392767889563
LLQKLHRSL	9	Unmodified	_LLQKLHRSL_					0	0	0			REV__ENST00000531580.1_1_11:9168571-9172264:-|nuORF	REV__ENST00000531580.1_1_11:9168571-9172264:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	554.353483	1106.69241	-0.73178	-0.00040567	4.2585	0.0023607	3.5267	0.001955	554.354412449851	133.07	0.73444	131.94	131.73	132.47	-1.1249	-0.024018	2.3966E-05	NaN	42.396	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13733	+		32461	22397	26717	26742							0.14333392767889563
LLQKLILW	8	Unmodified	_LLQKLILW_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;ENST00000533635.5_1_11:6587803-6591461:+|nuORF;ENST00000525883.5_1_11:6587352-6591461:+|nuORF;ENST00000529821.5_1_11:6587803-6593213:+|nuORF;ENST00000530197.5_1_11:6587352-6593213:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.2578125	2	513.839146	1025.66374	-0.85767	-0.0004407	-3.2294	-0.0016594	-4.087	-0.0021001	513.8374394747982	63.793	0.4038	63.793	63.607	64.011	0					15	9	2	0	0	0	0.028476	1	5783	5783		25.45	2.4077	1	590130			32462	7829	26718	26743	35772	35772					0.15193275138744866
LLQKRIPK	8	Unmodified	_LLQKRIPK_					0	0	0		ENST00000591753.1_2_17:40715869-40717983:+|nuORF;ENSG00000068120|ENST00000393818|COASY;nc|ENSG00000068120|Q13057-2|COASY	ENST00000591753.1_2_17:40715869-40717983:+|nuORF	ENST00000591753.1_2_17:40715869-40717983:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.28375244140625	2	498.339844	994.665135	-0.56677	-0.00028245	0.2824	0.00014073	-0.28437	-0.00014171	498.3399741252259	55.153	1.1711	55.153	54.761	55.932	0					39	27	2	0	0	0	0.028476	1	4574	4574		28.254	20.023	1	366000			32463	1387	26719	26744	35773	35773					0.16758909227507957
LLQKVLAE	8	Unmodified	_LLQKVLAE_					0	0	0		nc|ENSG00000145734|A6H8Y1-2|BDP1;ENST00000508917.6_1_5:70751704-70841064:+|nuORF;nc|ENSG00000145734|A6H8Y1-7|BDP1;nc|ENSG00000145734|A6H8Y1-6|BDP1;ENSG00000145734|ENST00000358731|BDP1;nc|ENSG00000145734|A6H8Y1-4|BDP1;nc|ENSG00000145734|A6H8Y1-3|BDP1	nc|ENSG00000145734|A6H8Y1-2|BDP1	nc|ENSG00000145734|A6H8Y1-2|BDP1	MULTI-MSMS	OvCa99_classI_Rep5	1	457.2922058105469	2	457.289485	912.564418	0.99148	0.00045339	1.428	0.000653	2.4195	0.0011064	457.28999347617025	141.89	2.9183	141.89	141.44	144.35	0					112	58	3	0	0	0	0.66057	1	16698	16698		51.335	0	1	466050			32464	5241	26720	26745	35774	35774					0.10463832454001931
LLQLASLNH	9	Unmodified	_LLQLASLNH_					0	0	0			REV__ENSG00000129009|ENST00000249842|ISLR	REV__ENSG00000129009|ENST00000249842|ISLR	MULTI-MSMS	OvCa99_classI_Rep5	1	504.79644775390625	2	504.795466	1007.57638	0.13879	7.0059E-05	-0.70433	-0.00035554	-0.56554	-0.00028548	504.7949114989136	52.708	1.5259	52.708	52.083	53.609	0					67	30	5	0	0	0	0.2422	1	4139	4139		69.628	0	1	3531500	+		32465	18883	26721	26746	35775	35775					0.07289449197173781
LLQLHLMGVL	10	Unmodified	_LLQLHLMGVL_					0	0	0		MBD6|p.S125Ffs*54|1|0.1|ENSG00000166987|chr12:57525110-57525110|C/-|frameshift_variant	MBD6|p.S125Ffs*54|1|0.1|ENSG00000166987|chr12:57525110-57525110|C/-|frameshift_variant	MBD6|p.S125Ffs*54|1|0.1|ENSG00000166987|chr12:57525110-57525110|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	568.846923828125	2	568.846645	1135.67874	-0.94066	-0.00053509	0.78408	0.00044602	-0.15658	-8.9071E-05	568.8468987403617	122.03	1.7301	121.81	120.93	122.66	-0.21803					88	34	3	0	0	0	0.52321	2	11825	11806;11825		51.335	11.277	1	269790			32466	14822	26722	26747	35776;35777	35777					0.11632398944448141
LLQLNHELE	9	Unmodified	_LLQLNHELE_					0	0	0			REV__ENSG00000100109|ENST00000407690|TFIP11	REV__ENSG00000100109|ENST00000407690|TFIP11	MULTI-MSMS	OvCa99_classI_Rep5	1	554.8047485351562	2	554.803488	1107.59242	2.1695	0.0012037	0.24811	0.00013765	2.4176	0.0013413	554.8032149991822	87.075	0.827	87.075	86.801	87.628	0					47	19	4	0	0	0	0.045281	1	9210	9210		122.18	7.2814	1	1297800	+		32467	17368	26723	26748	35778	35778					0.0429311064342528
LLQLNHELE	9	Unmodified	_LLQLNHELE_					0	0	0			REV__ENSG00000100109|ENST00000407690|TFIP11	REV__ENSG00000100109|ENST00000407690|TFIP11	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	554.803488	1107.59242	2.1695	0.0012037	0.24811	0.00013765	2.4176	0.0013413	554.8032149991822	87.075	0.827	87.075	86.801	87.628	0	0	0	NaN	122.18	47	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1297800	+		32468	17368	26723	26748							0.0429311064342528
LLQLNPNCAVL	11	Unmodified	_LLQLNPNCAVL_					0	0	0			REV__nc|ENSG00000149476|Q3LXA3-2|TKFC	REV__nc|ENSG00000149476|Q3LXA3-2|TKFC	MULTI-SECPEP	OvCa9_classI_Rep3	3	599.3645629882812	2	599.336641	1196.65873	2.8393	0.0017017	3.2066	0.0019218	6.0458	0.0036235	599.3382836127215	127.15	1.1438	126.08	125.7	126.85	-1.0715					46	21	4	0	0	0	0.025638	1	9950	9950		45.972	7.1661	1	74479	+		32469	20163	26724	26749	35779	35779					0.06826603213812632
LLQLPHYQPL	10	Unmodified	_LLQLPHYQPL_					0	0	0			REV__nc|ENSG00000172869|Q9Y485|DMXL1	REV__nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3499755859375	2	611.353148	1220.69174	-2.0282	-0.0012399	-1.664	-0.0010173	-3.6922	-0.0022573	611.3520273138611	126.24	1.2813	124.82	124.48	125.76	-1.4143					74	25	4	0	0	0	0.66721	1	12023	12023		34.173	1.3601	1	434950	+		32470	21731	26725	26750	35780	35780					0.09022553328168215
LLQLPRAPQGK	11	Unmodified	_LLQLPRAPQGK_					0	0	0		ENST00000589721.5_1_16:4845818-4846210:+|nuORF	ENST00000589721.5_1_16:4845818-4846210:+|nuORF	ENST00000589721.5_1_16:4845818-4846210:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	407.5865783691406	3	407.587307	1219.74009	0.44599	0.00018178	-3.014	-0.0012285	-2.568	-0.0010467	407.5861538857253	33.945	1.1824	33.945	33.728	34.911	0					71	24	4	0	0	0	0.68391	1	1612	1612		35.178	3.1441	1	3802100			32471	14093	26726	26751	35781	35781					0.1390104696806702
LLQLRALVQ	9	Unmodified	_LLQLRALVQ_					0	0	0			REV__KIF17|p.K764Tfs*27|1|0.06|ENSG00000117245|chr1:20682825-20682826|-/G|frameshift_variant	REV__KIF17|p.K764Tfs*27|1|0.06|ENSG00000117245|chr1:20682825-20682826|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	527.342529296875	2	527.342584	1052.67061	2.2817	0.0012032	-2.4212	-0.0012768	-0.13953	-7.3579E-05	527.3412130770646	27.081	0.8382	24.371	24.073	24.911	-2.7097					49	23	3	0	0	0	0.70177	1	426	426		17.365	0.89182	1	32709	+		32472	18345	26727	26752	35782	35782					0.14638588019306553
LLQLRDRRRLH	11	Unmodified	_LLQLRDRRRLH_					0	0	0		ENST00000307201.4_1_17:27890035-27893454:-|nuORF	ENST00000307201.4_1_17:27890035-27893454:-|nuORF	ENST00000307201.4_1_17:27890035-27893454:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	492.6342468261719	3	492.639176	1474.8957	-7.0686	-0.0034823	-2.6515	-0.0013062	-9.7202	-0.0047885	492.63775204394085	161.01	2.5056	159.66	158.64	161.14	-1.3571					138	50	3	0	0	0	0.72545	1	13999	13999		9.6461	3.3253	1	80334			32473	10253	26728	26753	35783	35783					0.17724510542211647
LLQMIVMPLV	10	Unmodified	_LLQMIVMPLV_					0	0	0		tr|A0A553SPU2|A0A553SPU2_NIACIL-cystineuptakeproteinTcyPOS=NialliacirculansOX=1397GN=CEQ21_09270PE=3SV=1	tr|A0A553SPU2|A0A553SPU2_NIACIL-cystineuptakeproteinTcyPOS=NialliacirculansOX=1397GN=CEQ21_09270PE=3SV=1	tr|A0A553SPU2|A0A553SPU2_NIACIL-cystineuptakeproteinTcyPOS=NialliacirculansOX=1397GN=CEQ21_09270PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.8197631835938	2	578.845256	1155.67596	-1.1112	-0.0006432	-2.4837	-0.0014377	-3.5949	-0.0020809	578.8438579611769	34.041	0.24019	34.041	33.921	34.161	0					8	4	2	0	0	0	0.026982	1	1618	1618		23.042	3.939	1	43391			32474	34086	26729	26754	35784	35784					0.10434807495266796
LLQNCHLGLE	10	Carbamidomethyl (C)	_LLQNC(Carbamidomethyl (C))HLGLE_	LLQNC(1)HLGLE		LLQNC(48)HLGLE		0	1	0		nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	MSMS	OvCa99_classI_Rep5	1	598.8071899414062	2	598.808248	1195.60194	NaN	NaN	NaN	NaN	NaN	NaN	NaN	159.82	1	159.82	159.32	160.32	0								0	0	0	0.15238	1	18736	18736		47.657	7.5992	1				32475	3675	26730	26755	35785	35785	36				0.011965556572931746
LLQPDCPDL	9	Carbamidomethyl (C)	_LLQPDC(Carbamidomethyl (C))PDL_	LLQPDC(1)PDL		LLQPDC(79)PDL		0	1	0		ENST00000468679.3_1_17:19267786-19267876:-|nuORF	ENST00000468679.3_1_17:19267786-19267876:-|nuORF	ENST00000468679.3_1_17:19267786-19267876:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	535.761474609375	2	535.762975	1069.5114	-0.90754	-0.00048622	0.58725	0.00031463	-0.32029	-0.0001716	535.7631866225162	78.426	1.9965	76.686	75.881	77.878	-1.7398					108	38	4	0	0	0	0.18193	3	6563	6547;6557;6563		79.451	10.324	1	494290			32476	12333	26731	26756	35786;35787;35788	35788	143				-0.02057913391013244
LLQPDCPDL	9	Carbamidomethyl (C)	_LLQPDC(Carbamidomethyl (C))PDL_	LLQPDC(1)PDL		LLQPDC(85)PDL		0	1	0		ENST00000468679.3_1_17:19267786-19267876:-|nuORF	ENST00000468679.3_1_17:19267786-19267876:-|nuORF	ENST00000468679.3_1_17:19267786-19267876:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.7638549804688	2	535.762975	1069.5114	-1.1202	-0.00060017	0.17559	9.4076E-05	-0.94461	-0.00050609	535.7630134743931	79.197	2.0761	76.446	76.132	78.208	-2.7514					95	42	4	0	0	0	0.14998	3	6416	6416;6439;6453		84.916	10.005	1	1904000			32477	12333	26731	26756	35789;35790;35791	35789	143				-0.02057913391013244
LLQPDCPDL	9	Carbamidomethyl (C)	_LLQPDC(Carbamidomethyl (C))PDL_					0	1	0		ENST00000468679.3_1_17:19267786-19267876:-|nuORF	ENST00000468679.3_1_17:19267786-19267876:-|nuORF	ENST00000468679.3_1_17:19267786-19267876:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	535.762975	1069.5114	2.0864	0.0011178	-0.89898	-0.00048164	1.1874	0.00063618	535.7627550378816	76.644	0.88792	76.644	76.28	77.168	0	0.052142	-0.001322	NaN	84.916	30	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	883740			32478	12333	26731	26756			143				-0.02057913391013244
LLQPFPVLPL	10	Unmodified	_LLQPFPVLPL_					0	0	0		ENST00000409459.5_1_11:95647464-95657155:-|nuORF	ENST00000409459.5_1_11:95647464-95657155:-|nuORF	ENST00000409459.5_1_11:95647464-95657155:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	568.8532104492188	2	568.857535	1135.70052	-7.0364	-0.0040027	-0.036741	-2.09E-05	-7.0732	-0.0040236	568.857375140279	161.4	1.8223	160.03	159.69	161.51	-1.3692					107	37	5	0	0	0	0.75594	1	14019	14019		24.203	2.2429	1	827460			32479	11526	26732	26757	35792	35792					0.1380952696465556
LLQPGRRIL	9	Unmodified	_LLQPGRRIL_					0	0	0			REV__ENST00000356406.9_1_4:8368562-8368688:-|nuORF	REV__ENST00000356406.9_1_4:8368562-8368688:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	533.3480834960938	2	533.3482	1064.68185	-0.61869	-0.00032998	-0.032112	-1.7127E-05	-0.65081	-0.00034711	533.348160054999	92.553	1.6565	91.385	91.024	92.68	-1.168					102	31	5	0	0	0	0.50066	1	8280	8280		42.474	7.2737	1	1110800	+		32480	24762	26733	26758	35793	35793					0.15209410113470767
LLQPKLLPT	9	Unmodified	_LLQPKLLPT_					0	0	0			REV__ENST00000349228.8_1_17:7462268-7463366:+|nuORF	REV__ENST00000349228.8_1_17:7462268-7463366:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	511.8355407714844	2	511.83406	1021.65357	2.017	0.0010324	0.27295	0.0001397	2.29	0.0011721	511.83395881141035	120.27	0.51824	120.27	120	120.52	0					29	12	3	0	0	0	0.026923	1	13830	13830		138.83	23.331	1	1280600	+		32481	24714	26734	26759	35794	35794					0.14360667413507144
LLQPKLLPT	9	Unmodified	_LLQPKLLPT_					0	0	0			REV__ENST00000349228.8_1_17:7462268-7463366:+|nuORF	REV__ENST00000349228.8_1_17:7462268-7463366:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.8338623046875	2	511.83406	1021.65357	-0.64714	-0.00033123	0.59425	0.00030416	-0.052883	-2.7067E-05	511.83421414075224	121.11	2.1319	119.76	119.34	121.47	-1.3479					84	41	3	0	0	0	0.29717	1	11390	11390		63.306	6.5852	1	241570	+		32482	24714	26734	26759	35795	35795					0.14360667413507144
LLQPPPSLSS	10	Unmodified	_LLQPPPSLSS_					0	0	0		ENST00000376773.5_1_6:30037115-30037175:+|nuORF	ENST00000376773.5_1_6:30037115-30037175:+|nuORF	ENST00000376773.5_1_6:30037115-30037175:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.7921142578125	2	519.795132	1037.57571	-0.39548	-0.00020557	-2.2434	-0.0011661	-2.6389	-0.0013717	519.7938318646319	121.84	4.0005	120.49	119.9	123.9	-1.3479					152	78	4	0	0	0	0.42962	1	11497	11497		64.207	0.901	1	769080			32483	11080	26735	26760	35796	35796					0.05842609757473838
LLQPQPPLL	9	Unmodified	_LLQPQPPLL_					0	0	0		nc|ENSG00000100320|O43251-9|RBFOX2;nc|ENSG00000100320|O43251-4|RBFOX2;nc|ENSG00000100320|O43251-7|RBFOX2	nc|ENSG00000100320|O43251-9|RBFOX2	nc|ENSG00000100320|O43251-9|RBFOX2	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8198547363281	2	509.81841	1017.62227	-0.38757	-0.00019759	-0.15651	-7.979E-05	-0.54408	-0.00027738	509.8183131283342	122.45	1.333	122.23	121.92	123.25	-0.21803					51	26	3	0	0	0	0.13154	2	11854	11854;11868		88.643	8.3619	1	92943			32484	14925	26736	26761	35797;35798	35797					0.11416094379421793
LLQPQPPLL	9	Unmodified	_LLQPQPPLL_					0	0	0		nc|ENSG00000100320|O43251-9|RBFOX2;nc|ENSG00000100320|O43251-4|RBFOX2;nc|ENSG00000100320|O43251-7|RBFOX2	nc|ENSG00000100320|O43251-9|RBFOX2	nc|ENSG00000100320|O43251-9|RBFOX2	MULTI-MATCH	OvCa99_classI_Rep5	1		2	509.81841	1017.62227	1.9187	0.0009782	0.095896	4.8889E-05	2.0146	0.0010271	509.8183694401061	122.46	0.82254	122.46	122.22	123.04	0	0.21233	0.00051656	NaN	88.643	34	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	522500			32485	14925	26736	26761							0.11416094379421793
LLQPQPPLL	9	Unmodified	_LLQPQPPLL_					0	0	0		nc|ENSG00000100320|O43251-9|RBFOX2;nc|ENSG00000100320|O43251-4|RBFOX2;nc|ENSG00000100320|O43251-7|RBFOX2	nc|ENSG00000100320|O43251-9|RBFOX2	nc|ENSG00000100320|O43251-9|RBFOX2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	509.81841	1017.62227	1.2443	0.00063439	-1.2956	-0.00066051	-0.051238	-2.6122E-05	509.81765535752487	123.17	1.3997	122.13	121.89	123.29	-1.0377	-0.11723	-0.00090224	NaN	88.643	48	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121210			32486	14925	26736	26761							0.11416094379421793
LLQQHAGI	8	Unmodified	_LLQQHAGI_					0	0	0		ENSG00000070182|ENST00000644917|SPTB;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB	ENSG00000070182|ENST00000644917|SPTB	ENSG00000070182|ENST00000644917|SPTB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	439.5748596191406	2	440.255977	878.497401	-0.14198	-6.2507E-05	0.17865	7.865E-05	0.036667	1.6143E-05	440.25603287536273	63.952	0.58588	60.477	60.345	60.931	-3.475					17	11	2	0	0	0	0.028476	1	4576	4576		8.8223	0	1	60706			32487	1421	26737	26762	35799	35799					0.05329221962904285
LLQQLLDKV	9	Unmodified	_LLQQLLDKV_					0	0	0			REV__ENST00000418116.6_1_11:18344284-18382305:+|nuORF	REV__ENST00000418116.6_1_11:18344284-18382305:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.3077392578125	2	535.334424	1068.6543	2.3852	0.0012769	0.18878	0.00010106	2.574	0.0013779	535.3342588442396	108.22	0.42509	108.22	107.99	108.41	0					15	9	2	0	0	0	0.027462	1	12251	12251		24.203	0	1	374240	+		32488	18002	26738	26763	35800	35800					0.12271462062562932
LLQQNVMRI	9	Unmodified	_LLQQNVMRI_					0	0	0			REV__ENST00000537312.5_1_12:121615084-121622602:+|nuORF	REV__ENST00000537312.5_1_12:121615084-121622602:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	557.8213500976562	2	557.823701	1113.63285	0.27631	0.00015413	-3.3414	-0.0018639	-3.0651	-0.0017098	557.8217188413842	98.133	1.2816	97.24	96.924	98.206	-0.89305					56	25	3	0	0	0	0.61208	1	8923	8923		30.504	1.3336	1	327620	+		32489	17194	26739	26764	35801	35801					0.08057753762204811
LLQQSDRRET	10	Unmodified	_LLQQSDRRET_					0	0	0			REV__sp|F5HCK7|UL140_HCMVMProteinUL140OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL140PE=4SV=1	REV__sp|F5HCK7|UL140_HCMVMProteinUL140OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL140PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.90863037109375	3	415.889714	1244.64731	-0.21918	-9.1154E-05	-2.2964	-0.00095504	-2.5156	-0.0010462	416.2230530507826	43.559	0.2161	43.559	43.435	43.651	0					6	4	2	0	0	0	0.027165	1	2880	2880		20.03	0	1	11115	+		32490	29398	26740	26765	35802	35802					0.03477497444055189
LLQRGVDV	8	Unmodified	_LLQRGVDV_					0	0	0		ENSG00000166183|ENST00000551177|ASPG;nc|ENSG00000166183|Q86U10-3|ASPG	ENSG00000166183|ENST00000551177|ASPG	ENSG00000166183|ENST00000551177|ASPG	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.269287109375	2	450.269084	898.523616	-0.59426	-0.00026758	0.24146	0.00010872	-0.3528	-0.00015886	450.2691842813432	72.264	1.3123	68.808	68.364	69.676	-3.4563					84	26	5	0	0	0	0.35821	1	5557	5557		96.19	11.275	1	1672500			32491	6649	26741	26766	35803	35803					0.07029491134380805
LLQRIIVE	8	Unmodified	_LLQRIIVE_					0	0	0		nc|ENSG00000151092|Q96IV0-3|NGLY1;nc|ENSG00000151092|Q96IV0-5|NGLY1;nc|ENSG00000151092|Q96IV0-2|NGLY1;ENSG00000151092|ENST00000280700|NGLY1	nc|ENSG00000151092|Q96IV0-3|NGLY1	nc|ENSG00000151092|Q96IV0-3|NGLY1	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.7639465332031	2	492.316035	982.617516	1.4166	0.00069743	0.4192	0.00020638	1.8358	0.00090381	492.3162549730854	106.94	0.63557	106.94	106.76	107.4	0					21	14	2	0	0	0	0.028476	1	12102	12102		38.806	0	1	361110			32492	5532	26742	26767	35804	35804					0.12551210236654242
LLQRINSWDV	10	Unmodified	_LLQRINSWDV_					0	0	0			REV__ENSG00000132155|ENST00000251849|RAF1	REV__ENSG00000132155|ENST00000251849|RAF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	622.314208984375	2	622.343312	1242.67207	-1.1172	-0.00069529	-2.5762	-0.0016033	-3.6934	-0.0022986	622.3420279065753	43.631	0.46764	40.624	40.326	40.793	-3.0074					13	8	2	0	0	0	0.026635	1	2090	2090		47.657	0	1	13282	+		32493	19056	26743	26768	35805	35805					0.06044177317380672
LLQRPFATL	9	Unmodified	_LLQRPFATL_					0	0	0			REV__MFHAS1|p.V624Pfs*59|1|0.13|ENSG00000147324|chr8:8891193-8891194|-/GA|frameshift_variant	REV__MFHAS1|p.V624Pfs*59|1|0.13|ENSG00000147324|chr8:8891193-8891194|-/GA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.2783203125	2	529.821484	1057.62842	-2.0287	-0.0010748	-3.7299	-0.0019762	-5.7585	-0.003051	529.8204499785684	95.75	0.55295	93.324	92.904	93.457	-2.4256					15	10	2	0	0	0	0.027462	1	8390	8390		30.504	13.139	1	12907	+		32494	28665	26744	26769	35806	35806					0.10190612610949756
LLQRPFATL	9	Unmodified	_LLQRPFATL_					0	0	0			REV__MFHAS1|p.V624Pfs*59|1|0.13|ENSG00000147324|chr8:8891193-8891194|-/GA|frameshift_variant	REV__MFHAS1|p.V624Pfs*59|1|0.13|ENSG00000147324|chr8:8891193-8891194|-/GA|frameshift_variant	MULTI-MATCH	OvCa99_classI_Rep5	1		2	529.821484	1057.62842	1.7106	0.00090633	0.76755	0.00040666	2.4782	0.001313	529.8215807878046	93.137	0.46117	93.137	92.885	93.346	0	-0.093461	0.00075787	NaN	44.117	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	935860	+		32495	28665	26744	26769							0.10190612610949756
LLQRPFLTG	9	Unmodified	_LLQRPFLTG_					0	0	0		nc|ENSG00000078900|O15350-6|TP73	nc|ENSG00000078900|O15350-6|TP73	nc|ENSG00000078900|O15350-6|TP73	MULTI-MSMS	OvCa9_classI_Rep3	3	522.8114013671875	2	522.813659	1043.61277	-5.1563	-0.0026958	0.99532	0.00052037	-4.161	-0.0021754	522.8140763744603	152.4	1.0707	151.42	151.09	152.16	-0.97299					54	21	4	0	0	0	0.65476	1	13015	13015		25.45	0	1	172960			32496	14895	26745	26770	35807	35807					0.09270326093883341
LLQRPLRAP	9	Unmodified	_LLQRPLRAP_					0	0	0		ENST00000449707.5_1_2:219507052-219507328:-|nuORF	ENST00000449707.5_1_2:219507052-219507328:-|nuORF	ENST00000449707.5_1_2:219507052-219507328:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.809326171875	2	532.340375	1062.6662	-1.3148	-0.00069992	0.59736	0.000318	-0.71745	-0.00038193	532.8420662644583	77.402	0.4829	74.586	74.342	74.825	-2.8165					14	9	2	0	0	0	0.027433	1	6211	6211		57.811	0	1	26825			32497	12031	26746	26771	35808	35808					0.13737123596411038
LLQRRRAFAF	10	Unmodified	_LLQRRRAFAF_					0	0	0		ENST00000262643.7_1_19:30314720-30314780:+|nuORF	ENST00000262643.7_1_19:30314720-30314780:+|nuORF	ENST00000262643.7_1_19:30314720-30314780:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	425.7493896484375	3	426.591163	1276.75166	-0.77093	-0.00032887	-0.64023	-0.00027312	-1.4112	-0.00060199	426.92509045582267	44.492	0.20387	41.453	41.31	41.514	-3.0385					5	3	2	0	0	0	0.027268	1	2213	2213		17.468	7.8219	1	13893			32498	9896	26747	26772	35809	35809					0.12435288782057796
LLQRSKAR	8	Unmodified	_LLQRSKAR_					0	0	0			REV__ENST00000489226.5_1_9:130485405-130489873:+|nuORF	REV__ENST00000489226.5_1_9:130485405-130489873:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.2984619140625	2	486.309075	970.603597	1.4934	0.00072628	-1.3452	-0.0006542	0.14822	7.2078E-05	486.3073599878793	67.75	0.29346	64.259	64.136	64.43	-3.4902					6	5	2	0	0	0	0.028476	1	5006	5006		13.775	0	1	22850	+		32499	21250	26748	26773	35810	35810					0.11711977528227635
LLQSGPPHRLV	11	Unmodified	_LLQSGPPHRLV_					0	0	0			REV__ENST00000412132.1_1_6:11810894-11811329:+|nuORF	REV__ENST00000412132.1_1_6:11810894-11811329:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	608.8673706054688	2	608.861672	1215.70879	1.4492	0.00088234	4.4277	0.0026958	5.8768	0.0035782	608.8642618650028	144.14	0.69055	144.14	143.76	144.45	0					25	13	3	0	0	0	0.62666	1	16858	16858		40.058	13.995	1	74985	+		32500	25494	26749	26774	35811	35811					0.10956473933993038
LLQSHTILL	9	Unmodified	_LLQSHTILL_					0	0	0		chr14:69394912-69396784|112|29.24|0.25|6.89|-|0|ERH,None|2	chr14:69394912-69396784|112|29.24|0.25|6.89|-|0|ERH,None|2	chr14:69394912-69396784|112|29.24|0.25|6.89|-|0|ERH,None|2	MULTI-MSMS	OvCa9_classI_Rep2	2	519.3204345703125	2	519.321317	1036.62808	-0.025857	-1.3428E-05	-0.77822	-0.00040415	-0.80408	-0.00041757	519.3208981722679	105.56	3.4593	105.12	104.75	108.21	-0.43642					137	69	2	0	0	0	0.059253	1	9826	9826		113.41	0	1	2268600			32501	349	26750	26775	35812	35812					0.11123192891091094
LLQSHTILL	9	Unmodified	_LLQSHTILL_					0	0	0		chr14:69394912-69396784|112|29.24|0.25|6.89|-|0|ERH,None|2	chr14:69394912-69396784|112|29.24|0.25|6.89|-|0|ERH,None|2	chr14:69394912-69396784|112|29.24|0.25|6.89|-|0|ERH,None|2	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.3222045898438	2	519.321317	1036.62808	-1.8278	-0.00094922	1.2458	0.00064697	-0.582	-0.00030225	519.321960155653	107.08	2.0153	105.2	104.75	106.76	-1.8785					100	39	5	0	0	0	0.059253	1	9794	9794		113.41	0	1	2715900			32502	349	26750	26775	35813	35813					0.11123192891091094
LLQSLSLGAN	10	Unmodified	_LLQSLSLGAN_					0	0	0			REV__ENST00000602945.5_1_16:67692675-67693876:-|nuORF	REV__ENST00000602945.5_1_16:67692675-67693876:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	508.29473876953125	2	508.292756	1014.57096	0.78552	0.00039928	2.356	0.0011976	3.1416	0.0015968	508.2931902163375	105.68	0.43572	105.68	105.44	105.88	0					17	9	3	0	0	0	0.36605	1	11888	11888		72.879	3.2516	1	1038800	+		32503	17586	26751	26776	35814	35814					0.06425725614724342
LLQSLSLGAN	10	Unmodified	_LLQSLSLGAN_					0	0	0			REV__ENST00000602945.5_1_16:67692675-67693876:-|nuORF	REV__ENST00000602945.5_1_16:67692675-67693876:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	508.292756	1014.57096	0.78552	0.00039928	2.356	0.0011976	3.1416	0.0015968	508.2931902163375	105.68	0.43572	105.68	105.44	105.88	0	0	0	NaN	72.879	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1038800	+		32504	17586	26751	26776							0.06425725614724342
LLQTLCLPA	9	Unmodified	_LLQTLCLPA_					0	0	0		ENST00000562229.1_1_16:33110949-33113283:-|nuORF	ENST00000562229.1_1_16:33110949-33113283:-|nuORF	ENST00000562229.1_1_16:33110949-33113283:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	487.2823181152344	2	486.283346	970.552139	-0.74342	-0.00036151	1.0575	0.00051426	0.31412	0.00015275	486.2838385192381	98.512	1.0294	96.752	96.52	97.55	-1.7595					34	19	2	0	0	0	0.027462	1	6559	6559		14.664	0	1	130650			32505	13768	26752	26777	35815	35815					0.0656847271928882
LLQTNPTYLAK	11	Unmodified	_LLQTNPTYLAK_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	OvCa9_classI_Rep2	2	631.3629150390625	2	631.36117	1260.70779	-0.63727	-0.00040235	1.2512	0.00078999	0.61397	0.00038764	631.361781307063	108.13	1.0868	107.91	107.58	108.67	-0.22498					53	21	3	0	0	0	0.69424	1	10123	10123		31.634	1.3165	1	197310			32506	4862	26753	26778	35816	35816					0.08786214774409018
LLQTPEPYSD	10	Unmodified	_LLQTPEPYSD_					0	0	0			REV__nc|ENSG00000181634|O95150-3|TNFSF15	REV__nc|ENSG00000181634|O95150-3|TNFSF15	MULTI-MSMS	OvCa99_classI_Rep5	1	581.7859497070312	2	581.784961	1161.55537	0.72191	0.00042	2.2485	0.0013082	2.9704	0.0017282	581.7860160400336	154.96	2.1777	154.96	154.47	156.65	0					88	42	3	0	0	0	0.6349	1	18209	18209		37.812	6.2817	1	201530	+		32507	22241	26754	26779	35817	35817					-0.018946056930190025
LLQTPIPRK	9	Unmodified	_LLQTPIPRK_					0	0	0		ENSG00000147183|ENST00000276127|CPXCR1	ENSG00000147183|ENST00000276127|CPXCR1	ENSG00000147183|ENST00000276127|CPXCR1	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.3397827148438	2	533.342584	1064.67061	-6.1908	-0.0033018	1.9226	0.0010254	-4.2682	-0.0022764	533.3435201452669	156.94	1.5192	155.39	155.04	156.56	-1.545					135	41	5	0	0	0	0.67509	1	15572	15572		23.042	1.0826	1	1621700			32508	5340	26755	26780	35818	35818					0.1408658801931324
LLQTTLALL	9	Unmodified	_LLQTTLALL_					0	0	0			REV__ENST00000377860.8_1_1:6324659-6342844:-|nuORF	REV__ENST00000377860.8_1_1:6324659-6342844:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	493.31787109375	2	493.318243	984.621933	0.61838	0.00030506	-0.65148	-0.00032139	-0.033099	-1.6328E-05	493.31777001150425	123.45	1.971	123.21	122.89	124.86	-0.23193					97	39	4	0	0	0	0.46377	1	12006	12006		45.952	3.5558	1	599460	+		32509	25128	26756	26781	35819	35819					0.12900674659545075
LLQTTMKM	8	Unmodified	_LLQTTMKM_					0	0	0		SAMD9L|p.R597T|1|0.32|ENSG00000177409|chr7:93134182-93134182|C/G|missense_variant	SAMD9L|p.R597T|1|0.32|ENSG00000177409|chr7:93134182-93134182|C/G|missense_variant	SAMD9L|p.R597T|1|0.32|ENSG00000177409|chr7:93134182-93134182|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	483.26141357421875	2	483.261556	964.508559	3.1961	0.0015446	-2.8896	-0.0013965	0.30649	0.00014811	483.26001752471973	25.718	0.79281	23.009	22.867	23.66	-2.7097					28	18	2	0	0	0	0.75723	1	293	293		23.042	1.3402	1	65601			32510	32798	26757	26782	35820	35820					0.024885399505137684
LLQVAVTIYGT	11	Unmodified	_LLQVAVTIYGT_					0	0	0		WDR17|p.L749Yfs*16|1|0.18|ENSG00000150627|chr4:176150167-176150167|T/-|frameshift_variant	WDR17|p.L749Yfs*16|1|0.18|ENSG00000150627|chr4:176150167-176150167|T/-|frameshift_variant	WDR17|p.L749Yfs*16|1|0.18|ENSG00000150627|chr4:176150167-176150167|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3427734375	2	589.344989	1176.67542	-3.0463	-0.0017953	-0.38122	-0.00022467	-3.4276	-0.00202	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.71789	1	14871	14871		23.523	3.5259	1	272220			32511	36304	26758	26783	35821	35821					0.09415427371436635
LLQWSLMLK	9	Unmodified	_LLQWSLMLK_					0	0	0		ENST00000299300.10_1_12:69991813-69991846:+|nuORF	ENST00000299300.10_1_12:69991813-69991846:+|nuORF	ENST00000299300.10_1_12:69991813-69991846:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	566.3308715820312	2	566.33337	1130.65219	-0.99416	-0.00056302	4.3874	0.0024848	3.3933	0.0019217	566.3356882188241	101.75	2.3041	100.23	99.583	101.89	-1.5211					96	43	4	0	0	0	0.31747	1	6967	6967		60.972	9.6365	1	254070			32512	10159	26759	26784	35822	35822					0.09208710053098912
LLRAAPLLL	9	Unmodified	_LLRAAPLLL_					0	0	0		LRP6|p.E1501Nfs*47|1|0.14|ENSG00000070018|chr12:12124611-12124611|C/-|frameshift_variant;ENSG00000070018|ENST00000261349|LRP6;LRP6|p.C603Sfs*12|1|0.05|ENSG00000070018|chr12:12164504-12164517|AGGTCTATAGAGGC/-|frameshift_variant	LRP6|p.E1501Nfs*47|1|0.14|ENSG00000070018|chr12:12124611-12124611|C/-|frameshift_variant	LRP6|p.E1501Nfs*47|1|0.14|ENSG00000070018|chr12:12124611-12124611|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	490.3360900878906	2	490.33677	978.658987	0.31976	0.00015679	-1.1553	-0.00056648	-0.83553	-0.00040969	490.3362879264998	135.18	3.9777	134.96	134.64	138.62	-0.22697					225	81	5	0	0	0	0.25214	15	13443	13443;13449;13461;13503;13521;13534;13545;13557;13570;13614;13630;13650;13665;13694;13723		68.485	15.961	1	7114000			32513	1415	26760	26785	35823;35824;35825;35826;35827;35828;35829;35830;35831;35832;35833;35834;35835;35836;35837	35823					0.16880390995981998
LLRAAPLLL	9	Unmodified	_LLRAAPLLL_					0	0	0		LRP6|p.E1501Nfs*47|1|0.14|ENSG00000070018|chr12:12124611-12124611|C/-|frameshift_variant;ENSG00000070018|ENST00000261349|LRP6;LRP6|p.C603Sfs*12|1|0.05|ENSG00000070018|chr12:12164504-12164517|AGGTCTATAGAGGC/-|frameshift_variant	LRP6|p.E1501Nfs*47|1|0.14|ENSG00000070018|chr12:12124611-12124611|C/-|frameshift_variant	LRP6|p.E1501Nfs*47|1|0.14|ENSG00000070018|chr12:12124611-12124611|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	490.336181640625	2	490.33677	978.658987	-1.5535	-0.00076172	0.74111	0.00036339	-0.81236	-0.00039833	490.33716888209767	136.71	4.5569	135.62	135.22	139.77	-1.0858					270	92	5	0	0	0	0.14739	19	11208	11084;11132;11144;11168;11174;11208;11220;11226;11232;11238;11244;11250;11256;11274;11286;11304;11329;11349;11366		85.359	27.912	1	5555400			32514	1415	26760	26785	35838;35839;35840;35841;35842;35843;35844;35845;35846;35847;35848;35849;35850;35851;35852;35853;35854;35855;35856	35843					0.16880390995981998
LLRAAPLLL	9	Unmodified	_LLRAAPLLL_					0	0	0		LRP6|p.E1501Nfs*47|1|0.14|ENSG00000070018|chr12:12124611-12124611|C/-|frameshift_variant;ENSG00000070018|ENST00000261349|LRP6;LRP6|p.C603Sfs*12|1|0.05|ENSG00000070018|chr12:12164504-12164517|AGGTCTATAGAGGC/-|frameshift_variant	LRP6|p.E1501Nfs*47|1|0.14|ENSG00000070018|chr12:12124611-12124611|C/-|frameshift_variant	LRP6|p.E1501Nfs*47|1|0.14|ENSG00000070018|chr12:12124611-12124611|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.3381652832031	2	490.33677	978.658987	2.3125	0.0011339	-3.376	-0.0016554	-1.0635	-0.00052147	490.335203673426	137.13	5.8682	135.59	135.18	141.05	-1.5437					314	118	5	0	0	0	0.27546	8	13482	13444;13455;13482;13496;13507;13543;13556;13581		65.803	17.888	1	8417000			32515	1415	26760	26785	35857;35858;35859;35860;35861;35862;35863;35864	35859					0.16880390995981998
LLRAGLPVL	9	Unmodified	_LLRAGLPVL_					0	0	0			REV__ENST00000309502.7_1_1:203097442-203098130:+|nuORF	REV__ENST00000309502.7_1_1:203097442-203098130:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	476.7951354980469	2	476.32112	950.627687	2.2358	0.001065	-2.477	-0.0011798	-0.24114	-0.00011486	476.3200723092344	111.5	1.923	110.4	110.1	112.02	-1.1038					68	38	3	0	0	0	0.027462	1	8092	8092		18.324	4.5491	1	58630	+		32516	24323	26761	26786	35865	35865					0.15039817961883273
LLRAHVRLH	9	Unmodified	_LLRAHVRLH_					0	0	0		nc|ENSG00000167182|Q02086-2|SP2;ENSG00000167182|ENST00000376741|SP2;SKAP1-SP2|1|fusion	nc|ENSG00000167182|Q02086-2|SP2	nc|ENSG00000167182|Q02086-2|SP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.318359375	2	557.851442	1113.68833	2.6656	0.001487	4.3709	0.0024383	7.0365	0.0039253	557.8536059956688	106.51	0.79326	106.51	106.05	106.85	0					43	17	3	0	0	0	0.027462	1	12020	12020		18.324	0	1	713280			32517	6766	26762	26787	35866	35866					0.13603348064839338
LLRALLLPS	9	Unmodified	_LLRALLLPS_					0	0	0			REV__ENST00000564774.5_1_16:84212549-84214094:-|nuORF	REV__ENST00000564774.5_1_16:84212549-84214094:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.33428955078125	2	498.334227	994.653902	-0.32382	-0.00016137	-0.21052	-0.00010491	-0.53434	-0.00026628	498.334091062265	122.71	0.88941	122.49	122.12	123.01	-0.21803					72	17	5	0	0	0	0.31747	1	11889	11889		60.972	3.1607	1	2870900	+		32518	17599	26763	26788	35867	35867					0.15636087133384535
LLRALLLPS	9	Unmodified	_LLRALLLPS_					0	0	0			REV__ENST00000564774.5_1_16:84212549-84214094:-|nuORF	REV__ENST00000564774.5_1_16:84212549-84214094:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3337097167969	2	498.334227	994.653902	1.2058	0.00060088	-1.8531	-0.00092347	-0.64734	-0.00032259	498.3333151769235	123.76	0.97957	122.73	122.31	123.29	-1.0377					75	18	5	0	0	0	0.31747	1	9611	9611		60.972	0.67798	1	3991100	+		32519	17599	26763	26788	35868	35868					0.15636087133384535
LLRALLLPS	9	Unmodified	_LLRALLLPS_					0	0	0			REV__ENST00000564774.5_1_16:84212549-84214094:-|nuORF	REV__ENST00000564774.5_1_16:84212549-84214094:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3334655761719	2	498.334227	994.653902	-0.6989	-0.00034829	0.47295	0.00023569	-0.22596	-0.0001126	498.33435878229506	133.81	2.0717	132.69	132.27	134.34	-1.1226					102	41	4	0	0	0	0.19758	1	10768	10768		76.774	7.9873	1	981140	+		32520	17599	26763	26788	35869	35869					0.15636087133384535
LLRALPCLW	9	Unmodified	_LLRALPCLW_					0	0	0		ENST00000519685.5_1_8:22875776-22875938:+|nuORF	ENST00000519685.5_1_8:22875776-22875938:+|nuORF	ENST00000519685.5_1_8:22875776-22875938:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	542.7941284179688	2	542.82043	1083.62631	0.33215	0.0001803	-3.8117	-0.0020691	-3.4796	-0.0018888	542.8182096140853	130.35	0.49486	130.12	129.91	130.4	-0.22697					13	9	2	0	0	0	0.027462	1	12835	12835		35.201	3.2459	1	12569			32521	13091	26764	26789	35870	35870					0.08783860601465676
LLRALPLTL	9	Unmodified	_LLRALPLTL_					0	0	0			REV__ENSG00000139641|ENST00000394048|ESYT1	REV__ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	OvCa9_classI_Rep2	2	505.3418273925781	2	505.342052	1008.66955	-0.1959	-9.8999E-05	-1.673	-0.00084545	-1.8689	-0.00094444	505.3408478582907	133.56	2.7048	133.33	132.13	134.83	-0.22697					158	54	5	0	0	0	0.24951	2	13197	13197;13227		68.787	7.8149	1	1592700	+		32522	19626	26765	26790	35871;35872	35871					0.16556373650416845
LLRALPLTL	9	Unmodified	_LLRALPLTL_					0	0	0			REV__ENSG00000139641|ENST00000394048|ESYT1	REV__ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	OvCa9_classI_Rep3	3	505.3421630859375	2	505.342052	1008.66955	-1.2256	-0.00061935	0.24452	0.00012356	-0.9811	-0.00049579	505.3419478940064	134.8	1.6252	133.68	133.41	135.03	-1.1226					106	32	5	0	0	0	0.38529	3	10886	10886;10892;10956		53.351	3.9099	1	959590	+		32523	19626	26765	26790	35873;35874;35875	35873					0.16556373650416845
LLRARPVI	8	Unmodified	_LLRARPVI_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000506401.6_1_17:48148218-48152910:+|nuORF;ITGA9|p.V741Gfs*12|1|0.08|ENSG00000144668|chr3:37736969-37736970|-/G|frameshift_variant;ITGA9|p.T742Lfs*28|1|0.06|ENSG00000144668|chr3:37736971-37736972|-/GTTGCAAATATTAGACCATTGCC|frameshift_variant;ENSG00000144668|ENST00000264741|ITGA9	ENSG00000005884|ENST00000320031|ITGA3;ITGA9|p.V741Gfs*12|1|0.08|ENSG00000144668|chr3:37736969-37736970|-/G|frameshift_variant	ENSG00000005884|ENST00000320031|ITGA3	MULTI-SECPEP	OvCa9_classI_Rep2	2	469.2532043457031	2	469.318912	936.62327	-0.90163	-0.00042315	-0.39757	-0.00018659	-1.2992	-0.00060974	469.3187038821004	85.924	0.64977	84.433	84.146	84.796	-1.4907					21	12	2	0	0	0	0.028476	1	7437	7437		29.842	0	1	18113			32524	863;5171	26766	26791	35876	35876					0.15242353538985753
LLRASPPL	8	Unmodified	_LLRASPPL_					0	0	0			REV__ENST00000238682.7_1_14:76447232-76447325:-|nuORF	REV__ENST00000238682.7_1_14:76447232-76447325:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	433.7756652832031	2	433.776545	865.538538	-0.012289	-5.3307E-06	0.31994	0.00013878	0.30765	0.00013345	433.77652204102844	83.183	2.0991	81.584	80.645	82.744	-1.5989					79	41	3	0	0	0	0.65582	1	7141	7141		52.299	2.2746	1	545560	+		32525	23818	26767	26792	35877	35877					0.10038983002368695
LLRCGRPRW	9	Unmodified	_LLRCGRPRW_					0	0	0			REV__ENST00000324096.8_1_19:17836915-17837251:+|nuORF	REV__ENST00000324096.8_1_19:17836915-17837251:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	578.8547973632812	2	578.829652	1155.64475	-0.88243	-0.00051077	0.22942	0.0001328	-0.653	-0.00037798	578.8307488271613	73.901	0.42201	71.93	71.64	72.062	-1.9711					9	7	2	0	0	0	0.027462	1	6009	6009		40.573	6.651	1	15953	+		32526	24469	26768	26793	35878	35878					0.07315415296034189
LLRDALVL	8	Unmodified	_LLRDALVL_					0	0	0		ENST00000601667.5_1_19:52217262-52219608:-|nuORF	ENST00000601667.5_1_19:52217262-52219608:-|nuORF	ENST00000601667.5_1_19:52217262-52219608:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.7969970703125	2	456.797478	911.580402	-0.19337	-8.8331E-05	-0.21738	-9.9301E-05	-0.41075	-0.00018763	456.7973138081142	105.4	4.1348	103.39	102.95	107.09	-2.0161					221	81	4	0	0	0	0.45246	3	9609	9609;9622;9646		82.305	2.3658	1	1556700			32527	14226	26769	26794	35879;35880;35881	35879					0.12107538690884212
LLRDKWYFRPV	11	Unmodified	_LLRDKWYFRPV_					0	0	0			REV__nc|ENSG00000170266|P16278-2|GLB1	REV__nc|ENSG00000170266|P16278-2|GLB1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.2880859375	3	498.285628	1491.83505	2.1913	0.0010919	1.4099	0.00070252	3.6012	0.0017944	498.62062534128734	27.543	0.58479	24.833	24.66	25.245	-2.7097					32	13	3	0	0	0	0.72488	1	485	485		17.167	2.4731	1	41683	+		32528	21526	26770	26795	35882	35882					0.10880980439242194
LLRDNGALLKK	11	Unmodified	_LLRDNGALLKK_					0	0	0			REV__tr|A0A7D6VV07|A0A7D6VV07_9CLOTCd(2+)-exportingATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03530PE=3SV=1	REV__tr|A0A7D6VV07|A0A7D6VV07_9CLOTCd(2+)-exportingATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03530PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.26220703125	3	414.262712	1239.76631	0.073708	3.0534E-05	-2.0348	-0.00084293	-1.9611	-0.00081239	414.2618187943835	20.482	1.3692	19.143	18.851	20.22	-1.3386					77	27	4	0	0	0	0.72297	1	45	45		21.78	0	1	397370	+		32529	31702	26771	26796	35883	35883					0.15601316139532173
LLRDYRAE	8	Unmodified	_LLRDYRAE_					0	0	0		chr2:66474314-66512149|123|17.56|0.16|6.76|+|0|None,MEIS1|1	chr2:66474314-66512149|123|17.56|0.16|6.76|+|0|None,MEIS1|1	chr2:66474314-66512149|123|17.56|0.16|6.76|+|0|None,MEIS1|1	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.8285522460938	2	518.282723	1034.55089	1.7538	0.00090899	2.3109	0.0011977	4.0647	0.0021067	518.785416663989	122.41	0.26269	121.38	121.27	121.53	-1.0286					5	4	2	0	0	0	0.028476	1	9406	9406		56.721	34.761	1	5606.8			32530	444	26772	26797	35884	35884					0.03499974674764417
LLREDWVD	8	Unmodified	_LLREDWVD_					0	0	0			REV__tr|A0A553SP53|A0A553SP53_NIACIYlqDproteinOS=NialliacirculansOX=1397GN=CEQ21_25615PE=4SV=1	REV__tr|A0A553SP53|A0A553SP53_NIACIYlqDproteinOS=NialliacirculansOX=1397GN=CEQ21_25615PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.3278198242188	2	523.269281	1044.52401	1.5969	0.0008356	2.0237	0.0010589	3.6206	0.0018945	523.2704301456336	133.97	0.33484	133.97	133.77	134.1	0					10	6	2	0	0	0	0.028476	1	15584	15584		40.573	12.69	1	25552	+		32531	30494	26773	26798	35885	35885					0.0035286606357658457
LLREEPDA	8	Unmodified	_LLREEPDA_					0	0	0		nc|ENSG00000183337|Q6W2J9-4|BCOR;nc|ENSG00000183337|Q6W2J9-2|BCOR;ENSG00000183337|ENST00000378444|BCOR;nc|ENSG00000183337|Q6W2J9-3|BCOR;ENST00000490976.5_1_X:39931586-39937182:-|nuORF	nc|ENSG00000183337|Q6W2J9-4|BCOR	nc|ENSG00000183337|Q6W2J9-4|BCOR	MULTI-MSMS	OvCa9_classI_Rep3	3	471.7480163574219	2	471.748182	941.481811	-0.24714	-0.00011659	-0.23144	-0.00010918	-0.47857	-0.00022577	471.7479787376128	116.81	1.2877	115.76	115.49	116.78	-1.0414					55	25	3	0	0	0	0.7043	1	8760	8760		42.474	9.662	1	307460			32532	8067	26774	26799	35886	35886					0.008728906551823457
LLREGLPDP	9	Unmodified	_LLREGLPDP_					0	0	0		ENSG00000145029|ENST00000273598|NICN1	ENSG00000145029|ENST00000273598|NICN1	ENSG00000145029|ENST00000273598|NICN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.28607177734375	2	505.287474	1008.5604	0.77528	0.00039174	-0.60258	-0.00030448	0.1727	8.7262E-05	505.2869690872894	84.832	1.2573	82.185	81.885	83.142	-2.6463					47	25	3	0	0	0	0.3076	1	7115	7115		62.107	0	1	263170			32533	5198	26775	26800	35887	35887					0.056457429602687625
LLREGLPDP	9	Unmodified	_LLREGLPDP_					0	0	0		ENSG00000145029|ENST00000273598|NICN1	ENSG00000145029|ENST00000273598|NICN1	ENSG00000145029|ENST00000273598|NICN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	505.287474	1008.5604	-0.98177	-0.00049608	1.0939	0.00055271	0.11208	5.6634E-05	505.28793022962844	83.745	1.3989	82.148	81.551	82.95	-1.597	-0.12084	0.00042276	NaN	62.107	61	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128140			32534	5198	26775	26800							0.056457429602687625
LLREKSLP	8	Unmodified	_LLREKSLP_					0	0	0			REV__tr|A0A553SFM6|A0A553SFM6_NIACIChaperoneproteinClpBOS=NialliacirculansOX=1397GN=clpBPE=3SV=1	REV__tr|A0A553SFM6|A0A553SFM6_NIACIChaperoneproteinClpBOS=NialliacirculansOX=1397GN=clpBPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	478.301513671875	2	478.300384	954.586216	-0.17159	-8.2071E-05	0.10288	4.9206E-05	-0.068713	-3.2866E-05	478.30024230289604	58.719	1.3509	58.719	58.488	59.839	0					59	34	3	0	0	0	0.42208	1	5004	5004		85.359	0	1	4724600	+		32535	29593	26776	26801	35888	35888					0.10710637202555517
LLRFLSSPKK	10	Unmodified	_LLRFLSSPKK_					0	0	0		KCNB1|p.C831Lfs*4|1|0.05|ENSG00000158445|chr20:49373069-49373070|-/G|frameshift_variant;ENSG00000158445|ENST00000371741|KCNB1;KCNB1|p.D382Efs*35|1|0.1|ENSG00000158445|chr20:49374414-49374415|-/GCTC|frameshift_variant	KCNB1|p.C831Lfs*4|1|0.05|ENSG00000158445|chr20:49373069-49373070|-/G|frameshift_variant	KCNB1|p.C831Lfs*4|1|0.05|ENSG00000158445|chr20:49373069-49373070|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	594.8533325195312	2	594.876791	1187.73903	-0.29388	-0.00017482	4.0625	0.0024167	3.7686	0.0022418	594.8795157654174	77.874	0.29996	75.521	75.449	75.749	-2.3527					8	5	2	0	0	0	0.026994	1	4121	4121		32.812	0	1	19002			32536	5951	26777	26802	35889	35889					0.1526683259917263
LLRFTDLMV	9	Unmodified	_LLRFTDLMV_					0	0	0			REV__nc|ENSG00000176293|P52742-2|ZNF135	REV__nc|ENSG00000176293|P52742-2|ZNF135	MULTI-MSMS	OvCa99_classI_Rep5	1	554.3143920898438	2	554.315177	1106.6158	0.29235	0.00016205	-1.6664	-0.00092372	-1.3741	-0.00076166	554.3143259234861	114.4	2.7187	114.4	113.88	116.6	0					179	58	6	0	0	0	0.16562	1	13180	13180		82.241	10.945	1	35652000	+		32537	21945	26778	26803	35890	35890					0.06675833156396038
LLRGDRQWWIN	11	Unmodified	_LLRGDRQWWIN_					0	0	0			REV__LLGL2-TMEM104|1|fusion	REV__LLGL2-TMEM104|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	486.2630615234375	3	486.265115	1455.77352	-0.63684	-0.00030967	-2.6448	-0.0012861	-3.2816	-0.0015957	486.26373434904593	48.313	1.292	45.604	45.331	46.623	-2.7097					68	25	3	0	0	0	0.72477	1	3000	3000		18.531	0	1	298430	+		32538	28620	26779	26804	35891	35891					0.0638604874000066
LLRGVLCTL	9	Unmodified	_LLRGVLCTL_					0	0	0		ENST00000258439.7_1_2:96918849-96919380:-|nuORF	ENST00000258439.7_1_2:96918849-96919380:-|nuORF	ENST00000258439.7_1_2:96918849-96919380:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	494.30035400390625	2	494.304613	986.594672	-5.5844	-0.0027604	-2.0973	-0.0010367	-7.6817	-0.0037971	494.3034903870968	153.96	1.4815	152.95	152.62	154.1	-1.0076					78	30	5	0	0	0	0.61208	1	13181	13181		30.504	3.7075	1	602630			32539	9837	26780	26805	35892	35892					0.10083867847538386
LLRHHPFLP	9	Unmodified	_LLRHHPFLP_					0	0	0		ENSG00000284395|ENST00000640283|PERCC1	ENSG00000284395|ENST00000640283|PERCC1	ENSG00000284395|ENST00000640283|PERCC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.3539428710938	2	565.335093	1128.65563	1.556	0.00087964	0.12713	7.1874E-05	1.6831	0.00095151	565.3336250587973	144.3	0.34476	144.3	144.11	144.45	0					9	6	3	0	0	0	0.027462	1	16867	16867		13.775	0	1	43483			32540	9621	26781	26806	35893	35893					0.0964514094198421
LLRHKEQMD	9	Unmodified	_LLRHKEQMD_					0	0	0			REV__chr11:72686191-72686879|106|11.77|0.21|5.81|-|1|TE_info:L2b,L2b_dup62905,L2,LINE,donor,+,72686879,72687300|ARAP1,None|5	REV__chr11:72686191-72686879|106|11.77|0.21|5.81|-|1|TE_info:L2b,L2b_dup62905,L2,LINE,donor,+,72686879,72687300|ARAP1,None|5	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.8410034179688	2	585.308415	1168.60228	1.4059	0.0008229	-0.1126	-6.5908E-05	1.2933	0.00075699	585.3081376483909	98.397	0.75612	98.397	98.121	98.877	0					24	17	2	0	0	0	0.027455	1	10861	10861		42.396	17.877	1	233340	+		32541	15868	26782	26807	35894	35894					0.02471975377147828
LLRHPALP	8	Unmodified	_LLRHPALP_					0	0	0		ENST00000460788.5_1_2:241654462-241654690:-|nuORF	ENST00000460788.5_1_2:241654462-241654690:-|nuORF	ENST00000460788.5_1_2:241654462-241654690:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.78790283203125	2	458.789987	915.565421	-2.1404	-0.00098197	-2.399	-0.0011007	-4.5394	-0.0020826	458.78877967166295	148.29	2.0994	146.85	146.22	148.32	-1.435					112	42	4	0	0	0	0.75724	1	14583	14583		23.037	1.3344	1	1351300			32542	12157	26783	26808	35895	35895					0.10426091613555855
LLRHSHLKGSP	11	Unmodified	_LLRHSHLKGSP_					0	0	0			REV__ENST00000431957.1_1_7:126935711-126936140:+|nuORF	REV__ENST00000431957.1_1_7:126935711-126936140:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	622.8670654296875	2	622.864746	1243.71494	0.88915	0.00055382	1.3388	0.00083391	2.228	0.0013877	622.8654000115959	131.71	1.5392	130.58	130.24	131.78	-1.1249					80	30	4	0	0	0	0.48812	1	10540	10540		54.722	4.6888	1	257180	+		32543	25727	26784	26809	35896	35896					0.10282992165502947
LLRHVGALQT	10	Unmodified	_LLRHVGALQT_					0	0	0			REV__nc|ENSG00000134775|Q2V2M9-2|FHOD3	REV__nc|ENSG00000134775|Q2V2M9-2|FHOD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.8111572265625	2	554.33529	1106.65603	0.6704	0.00037163	-1.8998	-0.0010531	-1.2294	-0.00068148	554.3344962785629	66.835	0.51212	66.835	66.661	67.173	0					20	12	2	0	0	0	0.027145	1	6205	6205		12.812	0	1	841330	+		32544	19233	26785	26810	35897	35897					0.10696515871177326
LLRINNLPK	9	Unmodified	_LLRINNLPK_					0	0	0		tr|A0A7D6W023|A0A7D6W023_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22275PE=4SV=1	tr|A0A7D6W023|A0A7D6W023_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22275PE=4SV=1	tr|A0A7D6W023|A0A7D6W023_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22275PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	540.9856567382812	2	540.848033	1079.68151	2.8295	0.0015303	-2.8569	-0.0015452	-0.027441	-1.4842E-05	540.8465797051892	25.562	0.43222	22.852	22.728	23.161	-2.7097					11	9	2	0	0	0	0.027462	1	300	300		25.45	0	1	11296			32545	35370	26786	26811	35898	35898					0.1448599039358669
LLRIQMFQ	8	Oxidation (M)	_LLRIQM(Oxidation (M))FQ_		LLRIQM(1)FQ		LLRIQM(48)FQ	0	0	1			REV__chr10:70217931-70230341|162|36.7|0.94|5.29|-|1|PPA1,PPA1|1	REV__chr10:70217931-70230341|162|36.7|0.94|5.29|-|1|PPA1,PPA1|1	MULTI-MSMS	OvCa9_classI_Rep2	2	532.7971801757812	2	532.799694	1063.58484	-1.4512	-0.00077319	-1.8424	-0.00098162	-3.2936	-0.0017548	532.7984173853858	115.26	1.5315	115.14	114.5	116.03	-0.11777					69	30	4	0	0	0	0.67745	1	10979	10979		47.916	8.6628	1	214400	+		32546	15849	26787	26812	35899	35899		384			0.05558679842147285
LLRIQQFYQWW	11	Unmodified	_LLRIQQFYQWW_					0	0	0		sp|P16745|UL09_HCMVAUncharacterizedproteinUL9OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL9PE=3SV=1	sp|P16745|UL09_HCMVAUncharacterizedproteinUL9OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL9PE=3SV=1	sp|P16745|UL09_HCMVAUncharacterizedproteinUL9OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL9PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.7843017578125	3	527.617266	1579.82997	-2.472	-0.0013043	3.9133	0.0020647	1.4413	0.00076046	527.6192210881461	50.059	0.5204	46.917	46.767	47.288	-3.1416					15	9	2	0	0	0	0.026344	1	2855	2855		14.086	1.6532	1	43500			32547	32893	26788	26813	35900	35900					0.06324676576650745
LLRISIPFD	9	Unmodified	_LLRISIPFD_					0	0	0		ENSG00000196600|ENST00000306494|SLC22A25	ENSG00000196600|ENST00000306494|SLC22A25	ENSG00000196600|ENST00000306494|SLC22A25	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.8062744140625	2	537.321317	1072.62808	2.5641	0.0013778	-1.5399	-0.00082742	1.0242	0.00055034	537.3203231576639	121.42	0.46169	121.42	121.25	121.71	0					10	9	2	0	0	0	0.027462	1	13964	13964		27.882	3.6795	1	29519			32548	8633	26789	26814	35901	35901					0.09467192891088416
LLRISSVTTNT	11	Unmodified	_LLRISSVTTNT_					0	0	0		ENST00000346365.8_1_9:34329596-34339047:+|nuORF	ENST00000346365.8_1_9:34329596-34339047:+|nuORF	ENST00000346365.8_1_9:34329596-34339047:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.2506103515625	3	402.23471	1203.6823	0.66727	0.0002684	0.70857	0.00028501	1.3758	0.00055341	402.23498191300394	33.966	0.57591	33.966	33.728	34.304	0					32	11	4	0	0	0	0.025806	1	1580	1580		16.53	0	1	905770			32549	10627	26790	26815	35902	35902					0.08860740251998322
LLRKVESL	8	Unmodified	_LLRKVESL_					0	0	0		ENSG00000171115|ENST00000307271|GIMAP8;GIMAP8|p.C521Wfs*50|1|0.06|ENSG00000171115|chr7:150477345-150477345|T/-|frameshift_variant	ENSG00000171115|ENST00000307271|GIMAP8	ENSG00000171115|ENST00000307271|GIMAP8	MULTI-MSMS	OvCa99_classI_Rep5	1	479.3064880371094	2	479.30821	956.601866	-0.35271	-0.00016905	0.43922	0.00021052	0.086516	4.1468E-05	479.30824997529277	38.663	0.48714	38.663	38.44	38.927	0					23	10	4	0	0	0	0.56195	1	2216	2216		71.296	0	1	308420			32550	7173	26791	26816	35903	35903					0.12182923719615246
LLRLAVSLL	9	Unmodified	_LLRLAVSLL_					0	0	0			REV__ENSG00000183153|ENST00000578689|GJD3	REV__ENSG00000183153|ENST00000578689|GJD3	MULTI-MSMS	OvCa99_classI_Rep5	1	499.34283447265625	2	499.342052	996.669552	1.8078	0.00090272	0.14997	7.4887E-05	1.9578	0.00097761	499.3419985600127	137.63	1.8206	137.63	137.35	139.17	0					73	38	3	0	0	0	0.55588	1	16055	16055		37.159	0	1	204070	+		32551	22345	26792	26817	35904	35904					0.17108373650421527
LLRLEEFCSL	10	Carbamidomethyl (C)	_LLRLEEFC(Carbamidomethyl (C))SL_	LLRLEEFC(1)SL		LLRLEEFC(60)SL		0	1	0		ENST00000485049.1_1_20:49411653-49449308:+|nuORF;nc|ENSG00000124243|Q8TDM0-2|BCAS4;ENSG00000124243|ENST00000371608|BCAS4;nc|ENSG00000124243|Q8TDM0-3|BCAS4;nc|ENSG00000124243|Q8TDM0|BCAS4	ENST00000485049.1_1_20:49411653-49449308:+|nuORF	ENST00000485049.1_1_20:49411653-49449308:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	427.2301940917969	3	427.228679	1278.66421	-1.4138	-0.00060401	4.2976	0.001836	2.8838	0.001232	427.2304810859985	51.934	1.8295	49.121	48.7	50.53	-2.8129					82	36	3	0	0	0	0.45822	1	3432	3432		60.118	13.661	1	324920			32552	3640	26793	26818	35905	35905	35				0.036022820056359706
LLRLGFSRCL	10	Unmodified	_LLRLGFSRCL_					0	0	0			REV__ENST00000322734.2_1_3:44627660-44635535:+|nuORF	REV__ENST00000322734.2_1_3:44627660-44635535:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3435668945312	2	589.347343	1176.68013	-5.1334	-0.0030254	-2.3752	-0.0013998	-7.5086	-0.0044252	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.75313	1	12431	12431		24.519	0.31644	1	589610	+		32553	24461	26794	26819	35906	35906					0.09886033033194508
LLRLKAFI	8	Unmodified	_LLRLKAFI_					0	0	0		ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	MULTI-SECPEP	OvCa9_classI_Rep3	3	487.7861328125	2	487.331488	972.648422	-0.51175	-0.00024939	1.8282	0.00089092	1.3164	0.00064153	487.33184152006953	103.28	0.42093	101.85	101.61	102.03	-1.4347					10	7	2	0	0	0	0.028476	1	7117	7117		21.702	0	1	5712.8			32554	8217	26795	26820	35907	35907					0.16100408341537786
LLRLLQCGALL	11	Unmodified	_LLRLLQCGALL_					0	0	0		ENST00000221665.4_1_19:56104161-56104986:-|nuORF	ENST00000221665.4_1_19:56104161-56104986:-|nuORF	ENST00000221665.4_1_19:56104161-56104986:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	606.8173828125	2	606.878476	1211.7424	0.83699	0.00050795	-3.9886	-0.0024206	-3.1517	-0.0019127	606.8757677006541	96.375	0.7654	94.546	94.271	95.036	-1.8286					32	14	3	0	0	0	0.025444	1	6373	6373		58.782	2.0609	1	41185			32555	9693	26796	26821	35908	35908					0.14499759381533295
LLRLLQCGALL	11	Unmodified	_LLRLLQCGALL_					0	0	0		ENST00000221665.4_1_19:56104161-56104986:-|nuORF	ENST00000221665.4_1_19:56104161-56104986:-|nuORF	ENST00000221665.4_1_19:56104161-56104986:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	606.8173828125	2	606.878476	1211.7424	1.0675	0.00064782	-3.8752	-0.0023518	-2.8077	-0.0017039	606.875972229008	97.082	1.52	95.304	94.93	96.45	-1.7783					58	29	3	0	0	0	0.025444	1	6373	6373		58.782	2.0609	1	49437			32556	9693	26796	26821	35909	35909					0.14499759381533295
LLRLLQCGALL	11	Unmodified	_LLRLLQCGALL_					0	0	0		ENST00000221665.4_1_19:56104161-56104986:-|nuORF	ENST00000221665.4_1_19:56104161-56104986:-|nuORF	ENST00000221665.4_1_19:56104161-56104986:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	606.878476	1211.7424	-0.61638	-0.00037407	-2.5055	-0.0015205	-3.1219	-0.0018946	606.8766803812765	95.294	0.6924	94.266	94.022	94.714	-1.0281	-0.14011	0.0007585	NaN	58.782	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34998			32557	9693	26796	26821							0.14499759381533295
LLRLLYEA	8	Unmodified	_LLRLLYEA_					0	0	0		ENSG00000149100|ENST00000531120|EIF3M;nc|ENSG00000149100|Q7L2H7-2|EIF3M;ENST00000524711.5_1_11:32608681-32615496:+|nuORF	ENSG00000149100|ENST00000531120|EIF3M	ENSG00000149100|ENST00000531120|EIF3M	MULTI-MSMS	OvCa9_classI_Rep2	2	495.8031005859375	2	495.80276	989.590967	1.19	0.00059	-1.4612	-0.00072446	-0.27119	-0.00013446	495.8020130680457	129.44	1.2355	129.21	128.57	129.81	-0.22696					60	24	3	0	0	0	0.75241	1	12718	12718		25.45	0	1	70530			32558	5441	26797	26822	35910	35910					0.095755213453117
LLRLPLSAPG	10	Unmodified	_LLRLPLSAPG_					0	0	0			REV__ENST00000596663.5_1_2:56403161-56411872:-|nuORF	REV__ENST00000596663.5_1_2:56403161-56411872:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	518.828369140625	2	518.829309	1035.64407	1.7024	0.00088324	-2.0698	-0.0010739	-0.36745	-0.00019064	518.8281964515016	122.5	2.5536	121.47	120.64	123.19	-1.0286					133	48	4	0	0	0	0.35465	2	9430	9406;9430		74.255	13.096	1	994930	+		32559	27997	26798	26823	35911;35912	35912					0.12766899127996112
LLRLPLSAPG	10	Unmodified	_LLRLPLSAPG_					0	0	0			REV__ENST00000596663.5_1_2:56403161-56411872:-|nuORF	REV__ENST00000596663.5_1_2:56403161-56411872:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.8283081054688	2	518.829309	1035.64407	0.0085595	4.4409E-06	-0.59769	-0.0003101	-0.58913	-0.00030566	518.8289766262699	122.91	2.4522	121.55	121.01	123.46	-1.3666					110	48	3	0	0	0	0.42962	1	11622	11622		64.207	6.7546	1	898440	+		32560	27997	26798	26823	35913	35913					0.12766899127996112
LLRLPSLL	8	Unmodified	_LLRLPSLL_					0	0	0		ENST00000413817.7_2_22:50753075-50753108:-|nuORF	ENST00000413817.7_2_22:50753075-50753108:-|nuORF	ENST00000413817.7_2_22:50753075-50753108:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	462.81597900390625	2	462.81567	923.616788	-0.21264	-9.8413E-05	0.45063	0.00020856	0.23799	0.00011015	462.81559515302166	122.75	0.88939	122.54	122.27	123.15	-0.21803					29	17	3	0	0	0	0.74229	1	11911	11911		30.504	1.3541	1	51587			32561	11569	26799	26824	35914	35914					0.15192415587614505
LLRLQGRLTQ	10	Unmodified	_LLRLQGRLTQ_					0	0	0			REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	598.8418579101562	2	599.374946	1196.73534	-0.63626	-0.00038136	0.52579	0.00031515	-0.11047	-6.6213E-05	599.3750464948561	77.982	0.6815	76.193	75.884	76.566	-1.7894					21	12	2	0	0	0	0.02717	1	6517	6517		12.207	0	1	17275	+		32562	18712	26800	26825	35915	35915					0.14484162825328895
LLRLQPLPA	9	Unmodified	_LLRLQPLPA_					0	0	0			REV__ENST00000480424.6_1_16:630665-633032:+|nuORF	REV__ENST00000480424.6_1_16:630665-633032:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	510.83148193359375	2	510.831852	1019.64915	1.2324	0.00062957	-1.715	-0.00087606	-0.48253	-0.00024649	510.8308797433976	121.36	1.4143	120.34	120.01	121.43	-1.0271					50	26	2	0	0	0	0.64339	1	9284	9284		26.796	0	1	296510	+		32563	26462	26801	26826	35916	35916					0.14011202990593574
LLRLRGPSRPS	11	Unmodified	_LLRLRGPSRPS_					0	0	0		ENST00000486260.5_1_1:155170782-155176189:-|nuORF;ENSG00000169231|ENST00000368378|THBS3	ENST00000486260.5_1_1:155170782-155176189:-|nuORF	ENST00000486260.5_1_1:155170782-155176189:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	626.89013671875	2	626.385845	1250.75714	0.37775	0.00023662	3.6155	0.0022647	3.9932	0.0025013	626.3880960980439	164.17	2.6761	164.17	163.08	165.75	0					198	100	2	0	0	0	0.72516	1	19243	19243		13.454	1.2472	1	238040			32564	12621	26802	26827	35917	35917					0.14178967573889167
LLRLVAEV	8	Unmodified	_LLRLVAEV_					0	0	0		ENST00000492977.5_1_1:202119404-202127449:-|nuORF;ENSG00000143851|ENST00000691036|PTPN7;nc|ENSG00000143851|P35236-2|PTPN7;nc|ENSG00000143851|P35236-3|PTPN7	ENST00000492977.5_1_1:202119404-202127449:-|nuORF	ENST00000492977.5_1_1:202119404-202127449:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	456.79705810546875	2	456.797478	911.580402	0.40268	0.00018394	-0.77327	-0.00035323	-0.37058	-0.00016928	456.7970629432732	104.69	4.1681	103.25	102.81	106.98	-1.4342					186	80	4	0	0	0	0.45246	1	7362	7362		82.305	0	1	1565700			32565	5101	26803	26828	35918	35918					0.12107538690884212
LLRLVAEV	8	Unmodified	_LLRLVAEV_					0	0	0		ENST00000492977.5_1_1:202119404-202127449:-|nuORF;ENSG00000143851|ENST00000691036|PTPN7;nc|ENSG00000143851|P35236-2|PTPN7;nc|ENSG00000143851|P35236-3|PTPN7	ENST00000492977.5_1_1:202119404-202127449:-|nuORF	ENST00000492977.5_1_1:202119404-202127449:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.7975158691406	2	456.797478	911.580402	-0.19337	-8.8331E-05	-0.21738	-9.9301E-05	-0.41075	-0.00018763	456.7973138081142	105.4	4.1348	103.39	102.95	107.09	-2.0161					221	81	4	0	0	0	0.42208	1	9550	9550		85.359	0	1	1556700			32566	5101	26803	26828	35919	35919					0.12107538690884212
LLRNLINST	9	Unmodified	_LLRNLINST_					0	0	0			REV__ENSG00000109738|ENST00000264428|GLRB	REV__ENSG00000109738|ENST00000264428|GLRB	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.3046875	2	522.314023	1042.61349	-0.18911	-9.8777E-05	-0.45455	-0.00023742	-0.64367	-0.0003362	522.3137232394896	47.143	1.1885	44.433	44.043	45.231	-2.7097					50	23	3	0	0	0	0.027462	1	2947	2947		11.511	0	1	197510	+		32567	17945	26804	26829	35920	35920					0.09389120742957857
LLRPAALI	8	Unmodified	_LLRPAALI_					0	0	0		ENST00000249071.10_2_22:37621413-37621920:-|nuORF	ENST00000249071.10_2_22:37621413-37621920:-|nuORF	ENST00000249071.10_2_22:37621413-37621920:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	433.794677734375	2	433.794738	865.574923	0.58254	0.0002527	-0.42547	-0.00018457	0.15707	6.8137E-05	433.7944359498501	111.98	2.1215	111.84	111.47	113.59	-0.13961					92	42	4	0	0	0	0.64377	2	10570	10570;10614		54.765	5.5096	1	565240			32568	9787	26805	26830	35921;35922	35921					0.13675859899069565
LLRPAALI	8	Unmodified	_LLRPAALI_					0	0	0		ENST00000249071.10_2_22:37621413-37621920:-|nuORF	ENST00000249071.10_2_22:37621413-37621920:-|nuORF	ENST00000249071.10_2_22:37621413-37621920:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	433.7951354980469	2	433.794738	865.574923	1.6323	0.0007081	-1.4478	-0.00062804	0.18456	8.0061E-05	433.79397915293447	113.07	1.9686	111.99	111.66	113.63	-1.0753					76	38	3	0	0	0	0.68312	1	8308	8308		46.766	0	1	587780			32569	9787	26805	26830	35923	35923					0.13675859899069565
LLRPAALI	8	Unmodified	_LLRPAALI_					0	0	0		ENST00000249071.10_2_22:37621413-37621920:-|nuORF	ENST00000249071.10_2_22:37621413-37621920:-|nuORF	ENST00000249071.10_2_22:37621413-37621920:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	433.7939758300781	2	433.794738	865.574923	1.1641	0.000505	-1.5519	-0.00067321	-0.38776	-0.00016821	433.79394637933103	113.56	1.8167	112.11	111.75	113.57	-1.4461					87	35	4	0	0	0	0.59103	1	10510	10510		65.897	0	1	638440			32570	9787	26805	26830	35924	35924					0.13675859899069565
LLRPALALI	9	Unmodified	_LLRPALALI_					0	0	0			REV__ENSG00000114735|ENST00000232854|HEMK1	REV__ENSG00000114735|ENST00000232854|HEMK1	MULTI-MSMS	OvCa9_classI_Rep2	2	490.3361511230469	2	490.33677	978.658987	0.31976	0.00015679	-1.1553	-0.00056648	-0.83553	-0.00040969	490.3362879264998	135.18	3.9777	134.96	134.64	138.62	-0.22697					225	81	5	0	0	0	0.59983	2	13509	13509;13620		31.955	1.4512	1	7114000	+		32571	18197	26806	26831	35925;35926	35925					0.16880390995981998
LLRPALALI	9	Unmodified	_LLRPALALI_					0	0	0			REV__ENSG00000114735|ENST00000232854|HEMK1	REV__ENSG00000114735|ENST00000232854|HEMK1	MULTI-MSMS	OvCa9_classI_Rep3	3	490.33636474609375	2	490.33677	978.658987	-1.5535	-0.00076172	0.74111	0.00036339	-0.81236	-0.00039833	490.33716888209767	136.71	4.5569	135.62	135.22	139.77	-1.0858					270	92	5	0	0	0	0.34496	2	11197	11197;11310		57.811	5.5121	1	5555400	+		32572	18197	26806	26831	35927;35928	35927					0.16880390995981998
LLRPALALI	9	Unmodified	_LLRPALALI_					0	0	0			REV__ENSG00000114735|ENST00000232854|HEMK1	REV__ENSG00000114735|ENST00000232854|HEMK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.337646484375	2	490.33677	978.658987	2.3125	0.0011339	-3.376	-0.0016554	-1.0635	-0.00052147	490.335203673426	137.13	5.8682	135.59	135.18	141.05	-1.5437					314	118	5	0	0	0	0.52083	2	13530	13290;13530		40.573	0	1	8417000	+		32573	18197	26806	26831	35929;35930	35930					0.16880390995981998
LLRPALTTF	9	Unmodified	_LLRPALTTF_					0	0	0		tr|A0A553SR97|A0A553SR97_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00685PE=3SV=1	tr|A0A553SR97|A0A553SR97_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00685PE=3SV=1	tr|A0A553SR97|A0A553SR97_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00685PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	516.3139038085938	2	516.316035	1030.61752	-4.2539	-0.0021964	0.14413	7.4418E-05	-4.1098	-0.002122	516.3160035152533	156.4	1.1562	156.18	155.89	157.05	-0.22696					77	28	5	0	0	0	0.69895	1	15940	15940		18.324	0.95945	1	397210			32574	34237	26807	26832	35931	35931					0.10343210236624145
LLRPASLL	8	Unmodified	_LLRPASLL_					0	0	0			REV__HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|27|1|sense	REV__HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|27|1|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	441.79205322265625	2	441.792195	881.569838	-0.16298	-7.2003E-05	0.067152	2.9667E-05	-0.095829	-4.2336E-05	441.7920815049728	99.795	1.3382	98.11	97.727	99.065	-1.685					65	26	4	0	0	0	0.64026	1	6745	6745		55.504	0	1	490170	+		32575	28231	26808	26833	35932	35932					0.12431556036472102
LLRPDYALL	9	Unmodified	_LLRPDYALL_					0	0	0		ENSG00000161031|ENST00000340880|PGLYRP2;nc|ENSG00000161031|Q96PD5-2|PGLYRP2;CON__ENSEMBL:ENSBTAP00000016285	ENSG00000161031|ENST00000340880|PGLYRP2	ENSG00000161031|ENST00000340880|PGLYRP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.27001953125	2	537.321317	1072.62808	2.5332	0.0013611	-2.7745	-0.0014908	-0.24139	-0.0001297	537.3206053451245	88.824	0.28506	88.824	88.677	88.962	0					11	6	3	0	0	0	0.027462	1	9466	9466		31.955	12.595	1	111000		+	32576	6117	26809	26834	35933	35933					0.09467192891065679
LLRPEVVIF	9	Unmodified	_LLRPEVVIF_					0	0	0		tr|A0A553SR88|A0A553SR88_NIACIROKfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00435PE=3SV=1	tr|A0A553SR88|A0A553SR88_NIACIROKfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00435PE=3SV=1	tr|A0A553SR88|A0A553SR88_NIACIROKfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00435PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	543.8180541992188	2	543.33951	1084.66447	0.022934	1.2461E-05	1.7088	0.00092844	1.7317	0.0009409	543.8401783611665	103.23	0.26268	101.79	101.61	101.87	-1.4347					6	4	2	0	0	0	0.027433	1	7126	7126		38.806	14.603	1	13540			32577	34235	26810	26835	35934	35934					0.12552069787784603
LLRPGVLLA	9	Unmodified	_LLRPGVLLA_					0	0	0			REV__ENSG00000119227|ENST00000412723|PIGZ	REV__ENSG00000119227|ENST00000412723|PIGZ	MULTI-MSMS	OvCa9_classI_Rep2	2	476.3210144042969	2	476.32112	950.627687	-0.03478	-1.6567E-05	-0.27228	-0.00012969	-0.30706	-0.00014626	476.32093576429344	108.77	1.7316	108.54	108.17	109.91	-0.22498					106	34	4	0	0	0	0.34496	1	10249	10249		57.811	0	1	1471400	+		32578	18430	26811	26836	35935	35935					0.15039817961894641
LLRPGVLLA	9	Unmodified	_LLRPGVLLA_					0	0	0			REV__ENSG00000119227|ENST00000412723|PIGZ	REV__ENSG00000119227|ENST00000412723|PIGZ	MULTI-MSMS	OvCa9_classI_Rep3	3	476.3216247558594	2	476.32112	950.627687	0.74261	0.00035372	-1.088	-0.00051824	-0.34539	-0.00016452	476.3205127768248	109.82	1.8658	108.67	108.24	110.11	-1.1444					108	35	5	0	0	0	0.36502	6	7957	7943;7950;7957;7975;7982;7994		55.504	9.1095	1	1722500	+		32579	18430	26811	26836	35936;35937;35938;35939;35940;35941	35938					0.15039817961894641
LLRPGVLLA	9	Unmodified	_LLRPGVLLA_					0	0	0			REV__ENSG00000119227|ENST00000412723|PIGZ	REV__ENSG00000119227|ENST00000412723|PIGZ	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.3208923339844	2	476.32112	950.627687	1.2312	0.00058647	-1.6541	-0.0007879	-0.42288	-0.00020143	476.3202634501802	110.36	1.7889	108.76	108.33	110.12	-1.6011					99	33	4	0	0	0	0.44294	2	10190	10190;10215		47.916	9.1095	1	1730200	+		32580	18430	26811	26836	35942;35943	35942					0.15039817961894641
LLRPPAEL	8	Unmodified	_LLRPPAEL_					0	0	0		ENST00000481860.6_1_11:119043673-119051967:+|nuORF;nc|ENSG00000160703|Q86UT6-2|NLRX1;ENSG00000160703|ENST00000409109|NLRX1	ENST00000481860.6_1_11:119043673-119051967:+|nuORF	ENST00000481860.6_1_11:119043673-119051967:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	454.2657165527344	2	454.781828	907.549102	0.21597	9.822E-05	-0.95781	-0.0004356	-0.74184	-0.00033738	454.78138873324184	103.7	0.94508	102.27	101.81	102.76	-1.4347					19	17	2	0	0	0	0.028476	1	7211	7211		55.504	0	1	9858			32581	6083	26812	26837	35944	35944					0.09162965656787492
LLRPPLVLL	9	Unmodified	_LLRPPLVLL_					0	0	0			REV__ENST00000519574.1_1_2:219125758-219128073:+|nuORF	REV__ENST00000519574.1_1_2:219125758-219128073:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3599243164062	2	517.360245	1032.70594	0.038556	1.9947E-05	-0.44941	-0.00023251	-0.41085	-0.00021256	517.3599133873521	135.24	1.9126	135.01	134.59	136.5	-0.22696					104	38	4	0	0	0	0.44294	1	13476	13476		47.916	15.961	1	602160	+		32582	27045	26813	26838	35945	35945					0.1908925054710835
LLRPPLVLL	9	Unmodified	_LLRPPLVLL_					0	0	0			REV__ENST00000519574.1_1_2:219125758-219128073:+|nuORF	REV__ENST00000519574.1_1_2:219125758-219128073:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	517.360107421875	2	517.360245	1032.70594	-0.63272	-0.00032734	0.17774	9.1954E-05	-0.45498	-0.00023539	517.3601946717101	136.63	2.1947	135.53	135.15	137.35	-1.1023					115	44	4	0	0	0	0.21395	3	11127	11097;11127;11183		73.975	7.7867	1	468020	+		32583	27045	26813	26838	35946;35947;35948	35947					0.1908925054710835
LLRPPLVLL	9	Unmodified	_LLRPPLVLL_					0	0	0			REV__ENST00000519574.1_1_2:219125758-219128073:+|nuORF	REV__ENST00000519574.1_1_2:219125758-219128073:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.360107421875	2	517.360245	1032.70594	1.8735	0.00096925	-2.5299	-0.0013089	-0.65645	-0.00033962	517.3588470360384	137.04	2.3917	135.5	135.08	137.47	-1.5437					132	51	5	0	0	0	0.14739	4	13312	13287;13300;13312;13396		85.359	8.5128	1	756000	+		32584	27045	26813	26838	35949;35950;35951;35952	35951					0.1908925054710835
LLRPVLKNK	9	Unmodified	_LLRPVLKNK_					0	0	0			REV__ENSG00000137076|ENST00000314888|TLN1;REV__TLN2|p.A451Gfs*14|1|0.13|ENSG00000171914|chr15:62697744-62697745|-/A|frameshift_variant	REV__ENSG00000137076|ENST00000314888|TLN1	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.2965087890625	2	540.866226	1079.7179	-1.3983	-0.00075629	1.241	0.00067121	-0.1573	-8.5076E-05	540.8666979957006	33.032	0.59908	30.322	30.173	30.772	-2.7097					15	11	3	0	0	0	0.027462	1	1144	1144		23.042	4.7181	1	17223	+		32585	19432;21656	26814	26839	35953	35953					0.18122867290298927
LLRQALAE	8	Unmodified	_LLRQALAE_					0	0	0		nc|ENSG00000165272|Q92482-2|AQP3;ENSG00000165272|ENST00000297991|AQP3;ENST00000463983.5_1_9:33443205-33447528:-|nuORF;ENST00000493581.1_1_9:33443725-33447528:-|nuORF	nc|ENSG00000165272|Q92482-2|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.2879943847656	2	457.276909	912.539266	-0.21854	-9.9932E-05	-0.19338	-8.8428E-05	-0.41192	-0.00018836	457.2767151144857	94.503	1.1995	92.035	91.762	92.962	-2.4685					38	23	3	0	0	0	0.028476	1	8248	8248		24.203	0	1	129880			32586	6543	26815	26840	35954	35954					0.07949777651424483
LLRQGWGVR	9	Unmodified	_LLRQGWGVR_					0	0	0		ENST00000586568.1_1_18:47809883-47810144:-|nuORF	ENST00000586568.1_1_18:47809883-47810144:-|nuORF	ENST00000586568.1_1_18:47809883-47810144:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.9724731445312	2	542.82235	1083.63015	-0.080555	-4.3727E-05	3.6558	0.0019844	3.5752	0.0019407	543.3239042745065	38.058	0.69345	35.131	35.007	35.7	-2.9264					15	13	2	0	0	0	0.027462	1	1496	1496		21.96	0	1	21795			32587	14048	26816	26841	35955	35955					0.09167666419557463
LLRQHAEDLN	10	Unmodified	_LLRQHAEDLN_					0	0	0		FES|p.L188Vfs*48|1|0.14|ENSG00000182511|chr15:90887263-90887264|-/GTGC|frameshift_variant;nc|ENSG00000182511|P07332-4|FES;ENSG00000182511|ENST00000328850|FES	FES|p.L188Vfs*48|1|0.14|ENSG00000182511|chr15:90887263-90887264|-/GTGC|frameshift_variant	FES|p.L188Vfs*48|1|0.14|ENSG00000182511|chr15:90887263-90887264|-/GTGC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.22808837890625	3	403.550921	1207.63093	0.42213	0.00017035	-0.14821	-5.9808E-05	0.27392	0.00011054	403.55076238040164	28.013	0.2991	28.013	27.841	28.14	0					12	5	3	0	0	0	0.027187	1	866	866		31.634	2.4642	1	36338			32588	8004	26817	26842	35956	35956					0.035424162779463586
LLRQLAGVRW	10	Unmodified	_LLRQLAGVRW_					0	0	0			REV__ENSG00000099957|ENST00000413302|P2RX6	REV__ENSG00000099957|ENST00000413302|P2RX6	MULTI-MSMS	OvCa9_classI_Rep2	2	606.369873046875	2	606.372207	1210.72986	-3.14	-0.001904	-1.1627	-0.00070505	-4.3027	-0.0026091	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.7759	1	14974	14974		21.96	1.9631	1	257720	+		32589	17344	26818	26843	35957	35957					0.13292484033490837
LLRQLETL	8	Unmodified	_LLRQLETL_					0	0	0			REV__nc|ENSG00000105953|Q02218-2|OGDH	REV__nc|ENSG00000105953|Q02218-2|OGDH	MULTI-MSMS	OvCa99_classI_Rep5	1	493.3075866699219	2	493.305667	984.596781	2.1954	0.001083	0.73043	0.00036033	2.9258	0.0014433	493.30586340702575	94.967	0.72375	94.967	94.56	95.284	0					32	16	3	0	0	0	0.65582	1	10355	10355		52.299	0	1	1443800	+		32590	17768	26819	26844	35958	35958					0.10386619857001733
LLRQLETL	8	Unmodified	_LLRQLETL_					0	0	0			REV__nc|ENSG00000105953|Q02218-2|OGDH	REV__nc|ENSG00000105953|Q02218-2|OGDH	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	493.305667	984.596781	2.1954	0.001083	0.73043	0.00036033	2.9258	0.0014433	493.30586340702575	94.967	0.72375	94.967	94.56	95.284	0	0	0	NaN	52.299	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1443800	+		32591	17768	26819	26844							0.10386619857001733
LLRQLRAGER	10	Unmodified	_LLRQLRAGER_					0	0	0			REV__ENSG00000070031|ENST00000176195|SCT	REV__ENSG00000070031|ENST00000176195|SCT	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3707885742188	2	606.370195	1210.72584	-0.26856	-0.00016285	-0.5906	-0.00035812	-0.85916	-0.00052097	606.369699493104	145.24	3.8933	143.8	141.64	145.53	-1.4357					226	74	4	0	0	0	0.83261	1	14142	14142		14.865	0.72775	1	336140	+		32592	16874	26820	26845	35959	35959					0.12890394539772387
LLRQNQRLHRR	11	Unmodified	_LLRQNQRLHRR_					0	0	0			REV__ENSG00000198844|ENST00000361926|ARHGEF15	REV__ENSG00000198844|ENST00000361926|ARHGEF15	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.7644958496094	3	497.302675	1488.8862	3.4875	0.0017344	-4.3779	-0.0021771	-0.89034	-0.00044277	497.3006864302361	88.458	0.16594	88.458	88.342	88.508	0					5	3	2	0	0	0	0.026525	1	9406	9406		3.6191	0	1	114020	+		32593	23078	26821	26846	35960	35960					0.1613074225665514
LLRQRLAQL	9	Unmodified	_LLRQRLAQL_					0	0	0			REV__ENSG00000072195|ENST00000312358|SPEG	REV__ENSG00000072195|ENST00000312358|SPEG	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.3291625976562	2	555.858932	1109.70331	2.2533	0.0012525	-0.081492	-4.5298E-05	2.1718	0.0012072	555.8586814739967	95.39	0.50185	95.39	95.075	95.577	0					16	11	2	0	0	0	0.027462	1	10390	10390		23.042	0	1	1129900	+		32594	16913	26822	26847	35961	35961					0.15284795142179064
LLRQRLGL	8	Unmodified	_LLRQRLGL_					0	0	0			REV__ENSG00000058453|ENST00000375541|CROCC	REV__ENSG00000058453|ENST00000375541|CROCC	MULTI-SECPEP	OvCa9_classI_Rep3	3	483.82586669921875	2	484.821818	967.629084	-0.46278	-0.00022437	0.90104	0.00043684	0.43825	0.00021248	484.8222359564934	73.437	0.94317	70.949	70.727	71.67	-2.4873					41	18	3	0	0	0	0.028476	1	3555	3555		33.516	0	1	138650	+		32595	16728	26823	26848	35962	35962					0.14397452050650372
LLRQSTTLTT	10	Unmodified	_LLRQSTTLTT_					0	0	0			REV__tr|A0A553STH7|A0A553STH7_NIACIPeptidaseOS=NialliacirculansOX=1397GN=CEQ21_04970PE=4SV=1	REV__tr|A0A553STH7|A0A553STH7_NIACIPeptidaseOS=NialliacirculansOX=1397GN=CEQ21_04970PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3297119140625	2	567.32987	1132.64519	-2.3399	-0.0013275	2.1766	0.0012349	-0.16324	-9.2608E-05	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.73378	1	14631	14631		26.693	1.1189	1	241060	+		32596	30964	26824	26849	35963	35963					0.08417068706239661
LLRRAACQEAQ	11	Unmodified	_LLRRAACQEAQ_					0	0	0		nc|ENSG00000006530|Q53H12-2|AGK;ENST00000496784.1_1_7:141255266-141296442:+|nuORF;ENST00000465241.5_1_7:141255266-141315366:+|nuORF;ENSG00000006530|ENST00000649286|AGK	nc|ENSG00000006530|Q53H12-2|AGK	nc|ENSG00000006530|Q53H12-2|AGK	MSMS	OvCa99_classI_Rep5	1	420.2280578613281	3	420.227673	1257.66119	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.79	1	134.79	134.29	135.29	0								0	0	0	0.19254	1	15694	15694		53.597	25.953	1				32597	879	26825	26850	35964	35964					0.042664516714921774
LLRREPKRL	9	Unmodified	_LLRREPKRL_					0	0	0			REV__ENSG00000003393|ENST00000264276|ALS2	REV__ENSG00000003393|ENST00000264276|ALS2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	591.3226928710938	2	590.885481	1179.75641	-0.92172	-0.00054463	1.0615	0.0006272	0.13974	8.2569E-05	590.8860066548084	42.336	0.34991	39.355	39.216	39.566	-2.9804					9	6	2	0	0	0	0.027462	1	1976	1976		17.365	0	1	11697	+		32598	16372	26826	26851	35965	35965					0.17372172924842744
LLRRIALALT	10	Unmodified	_LLRRIALALT_					0	0	0		ENST00000547237.1_1_14:25900789-25901323:-|nuORF	ENST00000547237.1_1_14:25900789-25901323:-|nuORF	ENST00000547237.1_1_14:25900789-25901323:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	569.8348388671875	2	570.384783	1138.75501	-0.56905	-0.00032458	1.6654	0.0009499	1.0963	0.00062532	570.3856494341309	99.284	0.15149	97.599	97.524	97.676	-1.685					4	2	2	0	0	0	0.027021	1	6670	6670		29.15	3.6994	1	19090			32599	13548	26827	26852	35966	35966					0.19118538836050902
LLRRKRLVC	9	Unmodified	_LLRRKRLVC_					0	0	0			REV__ENSG00000198113|ENST00000357503|TOR4A	REV__ENSG00000198113|ENST00000357503|TOR4A	MULTI-SECPEP	OvCa9_classI_Rep2	2	578.8547973632812	2	578.876602	1155.73865	-0.81174	-0.0004699	-4.3902	-0.0025414	-5.202	-0.0030113	578.8737583051926	73.678	0.52706	71.278	71.158	71.685	-2.3999					15	9	3	0	0	0	0.027462	1	6009	6009		42.474	8.5528	1	18057	+		32600	22989	26828	26853	35967	35967					0.167011343983404
LLRRKRLVC	9	Unmodified	_LLRRKRLVC_					0	0	0			REV__ENSG00000198113|ENST00000357503|TOR4A	REV__ENSG00000198113|ENST00000357503|TOR4A	MULTI-SECPEP	OvCa9_classI_Rep3	3	578.8560791015625	2	578.876602	1155.73865	-1.1196	-0.0006481	1.9621	0.0011358	0.84253	0.00048772	578.8774338080525	73.934	0.39548	71.446	71.225	71.62	-2.4873					15	7	3	0	0	0	0.027462	1	3635	3635		33.516	8.9964	1	56073	+		32601	22989	26828	26853	35968	35968					0.167011343983404
LLRRPSPSW	9	Unmodified	_LLRRPSPSW_					0	0	0			REV__ENST00000340437.8_1_11:61171089-61171380:-|nuORF	REV__ENST00000340437.8_1_11:61171089-61171380:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.76806640625	2	556.322183	1110.62981	0.46284	0.00025749	2.7115	0.0015085	3.1744	0.001766	556.3233004192854	57.84	0.29283	57.84	57.691	57.984	0					11	6	2	0	0	0	0.027462	1	4897	4897		35.618	6.4482	1	355080	+		32602	24623	26829	26854	35969	35969					0.0789224669970281
LLRRPVSKL	9	Unmodified	_LLRRPVSKL_					0	0	0		ENST00000343348.10_1_5:115779476-115779683:-|nuORF	ENST00000343348.10_1_5:115779476-115779683:-|nuORF	ENST00000343348.10_1_5:115779476-115779683:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2938842773438	2	541.36385	1080.71315	1.2421	0.00067242	-3.4745	-0.001881	-2.2324	-0.0012086	541.3631013466169	98.356	0.43045	98.356	98.165	98.596	0					16	9	3	0	0	0	0.027462	1	10840	10840		16.473	3.514	1	248120			32603	10598	26830	26855	35970	35970					0.17601983147574174
LLRRRGAPG	9	Unmodified	_LLRRRGAPG_					0	0	0			REV__ENST00000252599.8_2_19:17666455-17670143:+|nuORF	REV__ENST00000252599.8_2_19:17666455-17670143:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.33331298828125	2	498.314692	994.614831	0.31675	0.00015784	1.5909	0.00079279	1.9077	0.00095064	498.3152487387278	124.92	0.74073	124.69	124.47	125.21	-0.2359					20	14	2	0	0	0	0.027462	1	12133	12133		18.324	0	1	19756	+		32604	23867	26831	26856	35971	35971					0.11730799622375798
LLRRSLEA	8	Unmodified	_LLRRSLEA_					0	0	0		nc|ENSG00000174996|Q9H0B6-2|KLC2;ENSG00000174996|ENST00000394067|KLC2	nc|ENSG00000174996|Q9H0B6-2|KLC2	nc|ENSG00000174996|Q9H0B6-2|KLC2	MULTI-MSMS	OvCa9_classI_Rep3	3	479.2972106933594	2	479.295633	956.576714	-0.26237	-0.00012575	4.2577	0.0020407	3.9954	0.001915	479.29752817551383	116.42	1.3352	115.38	115	116.33	-1.0414					70	26	3	0	0	0	0.61758	2	8687	8687;8699		60.294	0	1	529340			32605	7506	26832	26857	35972;35973	35972					0.09668868917037798
LLRRYRVRTFL	11	Unmodified	_LLRRYRVRTFL_					0	0	0		ENST00000525757.1_1_11:123325460-123325514:+|nuORF	ENST00000525757.1_1_11:123325460-123325514:+|nuORF	ENST00000525757.1_1_11:123325460-123325514:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.311279296875	3	498.312288	1491.91504	-5.113	-0.0025478	0.297	0.000148	-4.816	-0.0023998	498.3123780141879	160.35	1.8473	160.12	159.68	161.53	-0.22697					120	37	4	0	0	0	0.72573	1	16299	16299		6.001	0.30226	1	150420			32606	13200	26833	26858	35974	35974					0.18875466833105747
LLRSILFFW	9	Unmodified	_LLRSILFFW_					0	0	0			REV__ENST00000471799.1_1_22:26886916-26887635:+|nuORF	REV__ENST00000471799.1_1_22:26886916-26887635:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8561401367188	2	597.855327	1193.6961	-1.9041	-0.0011384	3.5272	0.0021087	1.623	0.00097034	597.8573316932594	144.83	3.9651	143.86	141.71	145.68	-0.97301					192	79	4	0	0	0	0.61208	1	11997	11997		30.504	2.6214	1	187110	+		32607	26293	26834	26859	35975	35975					0.10700062541741318
LLRSLLPVP	9	Unmodified	_LLRSLLPVP_					0	0	0			REV__HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|69|2|sense	REV__HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|69|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.2709045410156	2	504.334227	1006.6539	2.5689	0.0012956	-0.56954	-0.00028724	1.9993	0.0010083	504.33377621409693	90.379	0.51318	90.379	90.143	90.656	0					27	12	3	0	0	0	0.027462	1	9661	9661		29.15	0	1	1360500	+		32608	28232	26835	26860	35976	35976					0.15084087133368485
LLRSLNQTG	9	Unmodified	_LLRSLNQTG_					0	0	0		ENST00000508669.1_1_4:517631-521020:+|nuORF;nc|ENSG00000174227|Q5H8A4-3|PIGG;nc|ENSG00000174227|Q5H8A4-2|PIGG;ENSG00000174227|ENST00000453061|PIGG;ENST00000511247.1_1_4:517319-518397:+|nuORF	ENST00000508669.1_1_4:517631-521020:+|nuORF	ENST00000508669.1_1_4:517631-521020:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2900695800781	2	501.290548	1000.56654	-1.4695	-0.00073667	1.3149	0.00065914	-0.15466	-7.7529E-05	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.5811	1	11265	11265		34.173	0	1	97838			32609	7448	26836	26861	35977	35977					0.06628261191804086
LLRSLVGEV	9	Unmodified	_LLRSLVGEV_					0	0	0			REV__ENST00000594962.5_1_19:17608063-17615347:+|nuORF	REV__ENST00000594962.5_1_19:17608063-17615347:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.29583740234375	2	493.305667	984.596781	-0.60183	-0.00029689	1.2792	0.00063106	0.67741	0.00033417	493.3062763191475	92.444	0.4079	89.901	89.618	90.026	-2.5425					16	7	3	0	0	0	0.027402	1	8012	8012		56.721	12.604	1	158270	+		32610	18937	26837	26862	35978	35978					0.10386619857001733
LLRSLVGEV	9	Unmodified	_LLRSLVGEV_					0	0	0			REV__ENST00000594962.5_1_19:17608063-17615347:+|nuORF	REV__ENST00000594962.5_1_19:17608063-17615347:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	493.305667	984.596781	2.7384	0.0013509	-0.21196	-0.00010456	2.5265	0.0012463	493.30536883089775	90.001	0.65748	90.001	89.763	90.421	0	0.056962	-0.00050994	NaN	56.721	28	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1444800	+		32611	18937	26837	26862							0.10386619857001733
LLRSNNKI	8	Unmodified	_LLRSNNKI_					0	0	0		tr|A0A553SQW2|A0A553SQW2_NIACICPBPfamilyintramembranemetalloproteaseOS=NialliacirculansOX=1397GN=CEQ21_07400PE=4SV=1	tr|A0A553SQW2|A0A553SQW2_NIACICPBPfamilyintramembranemetalloproteaseOS=NialliacirculansOX=1397GN=CEQ21_07400PE=4SV=1	tr|A0A553SQW2|A0A553SQW2_NIACICPBPfamilyintramembranemetalloproteaseOS=NialliacirculansOX=1397GN=CEQ21_07400PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.29736328125	2	479.295633	956.576714	-0.079369	-3.8041E-05	3.8756	0.0018575	3.7962	0.0018195	479.29735582244143	116.79	1.2501	115.43	115.04	116.29	-1.3645					65	23	3	0	0	0	0.7224	1	10943	10943		38.806	1.7777	1	647920			32612	34205	26838	26863	35979	35979					0.09668868917037798
LLRSPPAI	8	Unmodified	_LLRSPPAI_					0	0	0		ENST00000567728.1_1_16:50770637-50774611:-|nuORF	ENST00000567728.1_1_16:50770637-50774611:-|nuORF	ENST00000567728.1_1_16:50770637-50774611:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	433.775634765625	2	433.776545	865.538538	-0.012289	-5.3307E-06	0.31994	0.00013878	0.30765	0.00013345	433.77652204102844	83.183	2.0991	81.584	80.645	82.744	-1.5989					79	41	3	0	0	0	0.71369	1	7134	7134		40.573	1.7665	1	545560			32613	13865	26839	26864	35980	35980					0.10038983002368695
LLRSSGGGALA	11	Unmodified	_LLRSSGGGALA_					0	0	0			REV__ENST00000381801.5_1_13:25861436-25861823:-|nuORF	REV__ENST00000381801.5_1_13:25861436-25861823:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2895202636719	2	501.290548	1000.56654	-1.4695	-0.00073667	1.3149	0.00065914	-0.15466	-7.7529E-05	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.72459	1	11300	11300		20.947	0	1	97838	+		32614	25206	26840	26865	35981	35981					0.06628261191804086
LLRSSQLPS	9	Unmodified	_LLRSSQLPS_					0	0	0		ENST00000169551.10_2_18:71825744-71825822:+|nuORF	ENST00000169551.10_2_18:71825744-71825822:+|nuORF	ENST00000169551.10_2_18:71825744-71825822:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	500.79461669921875	2	500.792924	999.571294	-0.33552	-0.00016802	3.9077	0.001957	3.5722	0.0017889	500.7948099501536	108.45	4.1006	108.22	107.63	111.73	-0.22498					184	82	6	0	0	0	0.3076	1	10167	10167		62.107	3.3255	1	2094300			32615	9641	26841	26866	35982	35982					0.07149145334562945
LLRSVRGPP	9	Unmodified	_LLRSVRGPP_					0	0	0			REV__ENSG00000176058|ENST00000409012|TPRN	REV__ENSG00000176058|ENST00000409012|TPRN	MULTI-MSMS	OvCa99_classI_Rep5	1	497.8102722167969	2	497.811451	993.608348	0.78257	0.00038957	-3.1558	-0.001571	-2.3733	-0.0011814	497.8099979459528	131.84	1.4588	131.84	131.62	133.08	0					44	30	3	0	0	0	0.19758	1	15319	15319		76.774	4.1542	1	223190	+		32616	21930	26842	26867	35983	35983					0.11128861670999868
LLRSWWRRDRR	11	Unmodified	_LLRSWWRRDRR_					0	0	0		ENST00000216479.7_1_14:77924477-77924549:+|nuORF	ENST00000216479.7_1_14:77924477-77924549:+|nuORF	ENST00000216479.7_1_14:77924477-77924549:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.2461242675781	4	400.732738	1598.90185	1.2525	0.00050192	3.4311	0.001375	4.6836	0.0018769	400.7341463354781	44.836	0.58301	44.836	44.662	45.245	0					15	12	2	0	0	0	0.026505	1	3103	3103		3.026	0	1	115530			32617	9679	26843	26868	35984	35984					0.12635028773706836
LLRTEIVNPL	10	Unmodified	_LLRTEIVNPL_					0	0	0		ENST00000569891.5_1_16:50783609-50818363:+|nuORF;nc|ENSG00000083799|Q9NQC7-2|CYLD;ENSG00000083799|ENST00000427738|CYLD;ENST00000563629.1_1_16:50783909-50820919:+|nuORF	ENST00000569891.5_1_16:50783609-50818363:+|nuORF	ENST00000569891.5_1_16:50783609-50818363:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.356201171875	2	584.358431	1166.70231	-1.7162	-0.0010029	-1.68	-0.00098173	-3.3962	-0.0019846	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.66721	1	14410	14410		34.173	12.213	1	833330			32618	1699	26844	26869	35985	35985					0.1256253598260173
LLRTHRHL	8	Unmodified	_LLRTHRHL_					0	0	0			REV__nc|ENSG00000215788|Q93038-7|TNFRSF25	REV__nc|ENSG00000215788|Q93038-7|TNFRSF25	MULTI-MSMS	OvCa99_classI_Rep5	1	523.3228149414062	2	523.322517	1044.63048	-1.1473	-0.0006004	-0.23098	-0.00012088	-1.3783	-0.00072128	523.3222113937856	59.427	0.80122	59.427	59.156	59.957	0					43	20	3	0	0	0	0.65582	1	5120	5120		52.299	4.3836	1	2531300	+		32619	23319	26845	26870	35986	35986					0.1099508613940543
LLRTLLAPL	9	Unmodified	_LLRTLLAPL_					0	0	0			REV__nc|ENSG00000167889|Q3V5L5-2|MGAT5B	REV__nc|ENSG00000167889|Q3V5L5-2|MGAT5B	MULTI-MSMS	OvCa9_classI_Rep2	2	505.34185791015625	2	505.342052	1008.66955	-0.1959	-9.8999E-05	-1.673	-0.00084545	-1.8689	-0.00094444	505.3408478582907	133.56	2.7048	133.33	132.13	134.83	-0.22697					158	54	5	0	0	0	0.24951	1	13191	13191		68.787	10.976	1	1592700	+		32620	28987	26846	26871	35987	35987					0.16556373650394107
LLRTLLAVV	9	Unmodified	_LLRTLLAVV_					0	0	0		LRRC28|p.S231Rfs*22|1|0.07|ENSG00000168904|chr15:99352468-99352469|-/ATGGTTAGCAAGACTGCTCAGGACTCTGT|frameshift_variant	LRRC28|p.S231Rfs*22|1|0.07|ENSG00000168904|chr15:99352468-99352469|-/ATGGTTAGCAAGACTGCTCAGGACTCTGT|frameshift_variant	LRRC28|p.S231Rfs*22|1|0.07|ENSG00000168904|chr15:99352468-99352469|-/ATGGTTAGCAAGACTGCTCAGGACTCTGT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	499.34100341796875	2	499.342052	996.669552	1.2559	0.00062712	0.74467	0.00037184	2.0006	0.00099896	499.34225923220697	130.77	2.4091	130.77	130.39	132.8	0					94	50	4	0	0	0	0.10363	1	15204	15204		96.19	8.4361	1	815670			32621	14803	26847	26872	35988	35988					0.17108373650410158
LLRTQKMH	8	Unmodified	_LLRTQKMH_					0	0	0		ENST00000596095.1_1_19:50354666-50355403:+|nuORF	ENST00000596095.1_1_19:50354666-50355403:+|nuORF	ENST00000596095.1_1_19:50354666-50355403:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	513.7952880859375	2	513.797486	1025.58042	1.9895	0.0010222	1.3269	0.00068174	3.3163	0.0017039	513.7979445212013	28.327	0.36289	25.617	25.443	25.806	-2.7097					11	7	2	0	0	0	0.74394	1	590	590		13.775	1.5685	1	16299			32622	14184	26848	26873	35989	35989					0.06865215419247761
LLRVCAPPLV	10	Unmodified	_LLRVCAPPLV_					0	0	0			REV__ENSG00000145214|ENST00000273814|DGKQ	REV__ENSG00000145214|ENST00000273814|DGKQ	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.8324584960938	2	540.833537	1079.65252	-2.0025	-0.001083	-1.9373	-0.0010477	-3.9398	-0.0021308	540.8325567076699	124.8	3.4681	123.41	123.02	126.49	-1.3908					189	68	4	0	0	0	0.64063	2	11844	11844;11893		37.159	7.736	1	9581200	+		32623	19954	26849	26874	35990;35991	35990					0.11588129772940192
LLRVPRLN	8	Unmodified	_LLRVPRLN_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.73870849609375	2	490.821818	979.629084	0.25507	0.00012519	-0.40017	-0.00019641	-0.14511	-7.1222E-05	490.8214936925746	78.178	0.85656	75.361	75.116	75.973	-2.8165					23	17	2	0	0	0	0.028476	1	6347	6347		28.254	0	1	70345			32624	1754	26850	26875	35992	35992					0.1384545205064569
LLRVRGPLV	9	Unmodified	_LLRVRGPLV_					0	0	0			REV__ENST00000307201.4_1_17:27890035-27893454:-|nuORF	REV__ENST00000307201.4_1_17:27890035-27893454:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	511.84417724609375	2	511.845294	1021.67603	-0.69047	-0.00035341	0.68874	0.00035253	-0.0017335	-8.8728E-07	511.84548257829687	83.844	1.9051	82.298	81.692	83.597	-1.5462					91	37	4	0	0	0	0.71475	1	7212	7212		12.959	0	1	636290	+		32625	24307	26851	26876	35993	35993					0.1660631160181083
LLRVRGPLV	9	Unmodified	_LLRVRGPLV_					0	0	0			REV__ENST00000307201.4_1_17:27890035-27893454:-|nuORF	REV__ENST00000307201.4_1_17:27890035-27893454:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	511.8459777832031	2	511.845294	1021.67603	-0.9843	-0.00050381	0.68652	0.00035139	-0.29778	-0.00015242	511.8455626377996	85.007	2.3927	82.787	82.398	84.79	-2.2204					106	47	4	0	0	0	0.64339	1	4976	4976		26.796	0	1	859210	+		32626	24307	26851	26876	35994	35994					0.1660631160181083
LLRVRWLRLSH	11	Unmodified	_LLRVRWLRLSH_					0	0	0		nc|ENSG00000100399|Q6NUI6-2|CHADL;ENSG00000100399|ENST00000216241|CHADL	nc|ENSG00000100399|Q6NUI6-2|CHADL	nc|ENSG00000100399|Q6NUI6-2|CHADL	MULTI-MSMS	OvCa9_classI_Rep4_	4	483.6343688964844	3	483.636883	1447.88882	-6.2422	-0.003019	1.4394	0.00069613	-4.8029	-0.0023228	483.63750108223127	159.48	3.4267	157.89	156.66	160.09	-1.5894					215	86	4	0	0	0	0.7257	1	15748	15748		6.3209	0	1	104790			32627	2062	26852	26877	35995	35995					0.18279197661627222
LLRVTPLL	8	Unmodified	_LLRVTPLL_					0	0	0			REV__CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	REV__CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	462.81573486328125	2	462.81567	923.616788	-0.21264	-9.8413E-05	0.45063	0.00020856	0.23799	0.00011015	462.81559515302166	122.75	0.88939	122.54	122.27	123.15	-0.21803					29	17	3	0	0	0	0.74229	1	11903	11903		30.504	0	1	51587	+		32628	15732	26853	26878	35996	35996					0.15192415587614505
LLRVWPGRTP	10	Unmodified	_LLRVWPGRTP_					0	0	0		ENST00000392381.7_1_3:197024090-197024929:-|nuORF	ENST00000392381.7_1_3:197024090-197024929:-|nuORF	ENST00000392381.7_1_3:197024090-197024929:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8562622070312	2	597.858932	1193.70331	-1.9041	-0.0011384	-2.5033	-0.0014966	-4.4074	-0.002635	597.8573316932594	144.83	3.9651	143.86	141.71	145.68	-0.97301					192	79	4	0	0	0	0.75313	1	12021	12021		24.519	3.5723	1	187110			32629	11220	26854	26879	35997	35997					0.11420795142180395
LLRWGLGSH	9	Unmodified	_LLRWGLGSH_					0	0	0			REV__ENST00000219551.2_2_16:726280-726400:+|nuORF	REV__ENST00000219551.2_2_16:726280-726400:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	519.7935791015625	2	519.795801	1037.57705	-0.83173	-0.00043233	-2.9616	-0.0015394	-3.7934	-0.0019718	519.7941003158112	120.39	3.5079	120.22	119.69	123.2	-0.17137					148	70	4	0	0	0	0.40667	1	11669	11669		51.335	3.4199	1	553870	+		32630	23736	26855	26880	35998	35998					0.05976288636884419
LLRWKVNI	8	Unmodified	_LLRWKVNI_					0	0	0		ENST00000380009.8_1_5:94890945-94903636:+|nuORF	ENST00000380009.8_1_5:94890945-94903636:+|nuORF	ENST00000380009.8_1_5:94890945-94903636:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.8175659179688	2	521.332019	1040.64948	1.2497	0.0006515	2.2789	0.0011881	3.5286	0.0018396	521.3331547806147	117.13	0.64404	117.13	116.82	117.46	0					27	13	3	0	0	0	0.028476	1	13391	13391		24.203	3.2558	1	117420			32631	11140	26856	26881	35999	35999					0.13078622710463605
LLRWLFYWTP	10	Unmodified	_LLRWLFYWTP_					0	0	0			REV__PAQR6|p.T233*|1|0.09|ENSG00000160781|chr1:156244824-156244825|-/CA|frameshift_variant	REV__PAQR6|p.T233*|1|0.09|ENSG00000160781|chr1:156244824-156244825|-/CA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.77294921875	3	465.592169	1393.75468	0.17524	8.1589E-05	1.9656	0.00091517	2.1408	0.00099676	465.5929526274287	52.862	0.21525	52.862	52.741	52.956	0					6	4	2	0	0	0	0.027142	1	4174	4174		20.837	0	1	151540	+		32632	20672	26857	26882	36000	36000					0.07355119116209607
LLRWQGRS	8	Unmodified	_LLRWQGRS_					0	0	0			REV__ENST00000550135.5_1_19:58514063-58517364:+|nuORF	REV__ENST00000550135.5_1_19:58514063-58517364:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.6207275390625	2	508.293425	1014.5723	0.27847	0.00014154	-1.3962	-0.0007097	-1.1178	-0.00056816	508.2926922161679	57.92	0.50328	57.92	57.691	58.194	0					17	11	2	0	0	0	0.028476	1	4870	4870		30.504	5.0535	1	497820	+		32633	27464	26858	26883	36001	36001					0.06559404494134924
LLSAIHEGVQG	11	Unmodified	_LLSAIHEGVQG_					0	0	0			REV__tr|A0A7D6ZVK2|A0A7D6ZVK2_9CLOTTrksystempotassiumuptakeproteinTrkAOS=ClostridiumintestinaleOX=36845GN=HZF06_14115PE=4SV=1	REV__tr|A0A7D6ZVK2|A0A7D6ZVK2_9CLOTTrksystempotassiumuptakeproteinTrkAOS=ClostridiumintestinaleOX=36845GN=HZF06_14115PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.8273315429688	2	562.308938	1122.60332	2.3818	0.0013393	-1.611	-0.00090586	0.77086	0.00043346	562.3081495456295	92.116	1.0948	92.116	91.582	92.677	0					32	25	2	0	0	0	0.025496	1	9973	9973		25.574	13.938	1	1773700	+		32634	32255	26859	26884	36002	36002					0.046925130176987295
LLSALKKADM	10	Unmodified	_LLSALKKADM_					0	0	0			REV__ENSG00000184545|ENST00000397374|DUSP8	REV__ENSG00000184545|ENST00000397374|DUSP8	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3167724609375	2	545.32046	1088.62637	-2.8527	-0.0015556	-4.0579	-0.0022129	-6.9106	-0.0037685	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.78463	1	11987	11987		20.947	0.95016	1	337600	+		32635	22437	26860	26885	36003	36003					0.08559815810804139
LLSALLVVL	9	Unmodified	_LLSALLVVL_					0	0	0		ENSG00000120451|ENST00000265909|SNX19;nc|ENSG00000120451|Q92543-2|SNX19	ENSG00000120451|ENST00000265909|SNX19	ENSG00000120451|ENST00000265909|SNX19	MULTI-MSMS	OvCa99_classI_Rep5	1	470.8269958496094	2	470.825704	939.636855	0.66106	0.00031124	-0.10183	-4.7944E-05	0.55923	0.0002633	470.82550127095874	161.06	3.0909	161.06	159.47	162.56	0					174	61	3	0	0	0	0.39645	1	18716	18716		52.299	2.2746	1	597670			32636	3431	26861	26886	36004	36004					0.16462166527560385
LLSALQERE	9	Unmodified	_LLSALQERE_					0	0	0			REV__ENSG00000136327|ENST00000258829|NKX2-8	REV__ENSG00000136327|ENST00000258829|NKX2-8	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.8190307617188	2	529.795663	1057.57677	0.89668	0.00047506	-4.4117	-0.0023373	-3.515	-0.0018622	529.7933259958836	66.663	0.91315	63.776	63.528	64.441	-2.8873					24	17	2	0	0	0	0.027462	1	2736	2736		23.523	10.069	1	10825	+		32637	19379	26862	26887	36005	36005					0.05028824126361542
LLSDPRRH	8	Unmodified	_LLSDPRRH_					0	0	0			REV__sp|Q6SW05|UL150_HCMVMUncharacterizedproteinUL150OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL150PE=3SV=1	REV__sp|Q6SW05|UL150_HCMVMUncharacterizedproteinUL150OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL150PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.282958984375	2	497.283057	992.551562	3.2265	0.0016045	-2.5856	-0.0012858	0.64089	0.0003187	497.2811483243697	133.79	1.3806	132.27	132	133.38	-1.5257					58	27	4	0	0	0	0.64026	1	12931	12931		55.504	3.205	1	133500	+		32638	29443	26863	26888	36006	36006					0.05498814114469042
LLSDRTKM	8	Unmodified	_LLSDRTKM_					0	0	0			REV__tr|A0A553STH0|A0A553STH0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04830PE=4SV=1	REV__tr|A0A553STH0|A0A553STH0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04830PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	482.26593017578125	2	482.268227	962.521901	-0.80352	-0.00038751	-2.6464	-0.0012763	-3.4499	-0.0016638	482.26683044066414	75.481	2.445	73.627	72.231	74.676	-1.854					100	46	3	0	0	0	0.66057	1	6211	6211		51.335	3.6781	1	282650	+		32639	30960	26864	26889	36007	36007					0.039141140541232744
LLSDTVQHL	9	Unmodified	_LLSDTVQHL_					0	0	0		ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF;STAT6|p.E106Tfs*19|1|0.22|ENSG00000166888|chr12:57107235-57107254|TCCATAACAGCTTTTTTCTC/-|frameshift_variant;STAT6|p.K107Nfs*25|1|0.34|ENSG00000166888|chr12:57107249-57107250|-/G|frameshift_variant	ENSG00000166888|ENST00000300134|STAT6	ENSG00000166888|ENST00000300134|STAT6	MULTI-MSMS	OvCa99_classI_Rep5	1	513.2850341796875	2	513.284931	1024.55531	2.012	0.0010327	0.30106	0.00015453	2.3131	0.0011873	513.284879286686	85.751	0.69016	85.751	85.502	86.192	0					33	16	3	0	0	0	0.094616	1	9007	9007		98.629	7.8527	1	2443700			32640	6730	26865	26890	36008	36008					0.044014390976599316
LLSDTVQHL	9	Unmodified	_LLSDTVQHL_					0	0	0		ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF;STAT6|p.E106Tfs*19|1|0.22|ENSG00000166888|chr12:57107235-57107254|TCCATAACAGCTTTTTTCTC/-|frameshift_variant;STAT6|p.K107Nfs*25|1|0.34|ENSG00000166888|chr12:57107249-57107250|-/G|frameshift_variant	ENSG00000166888|ENST00000300134|STAT6	ENSG00000166888|ENST00000300134|STAT6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	513.284931	1024.55531	1.3444	0.00069007	-1.9221	-0.00098659	-0.5777	-0.00029652	513.2837741983236	87.487	1.9195	86.056	85.593	87.513	-1.4311	0.12676	-0.0017283	NaN	98.629	78	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182110			32641	6730	26865	26890							0.044014390976599316
LLSDTVQHL	9	Unmodified	_LLSDTVQHL_					0	0	0		ENSG00000166888|ENST00000300134|STAT6;ENST00000555641.1_1_12:57499966-57502061:-|nuORF;STAT6|p.E106Tfs*19|1|0.22|ENSG00000166888|chr12:57107235-57107254|TCCATAACAGCTTTTTTCTC/-|frameshift_variant;STAT6|p.K107Nfs*25|1|0.34|ENSG00000166888|chr12:57107249-57107250|-/G|frameshift_variant	ENSG00000166888|ENST00000300134|STAT6	ENSG00000166888|ENST00000300134|STAT6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	513.284931	1024.55531	-0.26051	-0.00013372	0.045641	2.3427E-05	-0.21487	-0.00011029	513.2848196838255	88.114	1.8939	85.983	85.648	87.542	-2.1309	0.053842	0.00029176	NaN	98.629	70	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	448790			32642	6730	26865	26890							0.044014390976599316
LLSDVAKKL	9	Unmodified	_LLSDVAKKL_					0	0	0			REV__ENSG00000115760|ENST00000421745|BIRC6	REV__ENSG00000115760|ENST00000421745|BIRC6	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.7663879394531	2	493.815867	985.617182	-0.25227	-0.00012457	-1.1395	-0.00056271	-1.3918	-0.00068729	493.81517344162364	62.118	0.17057	62.118	61.994	62.165	0					5	3	2	0	0	0	0.027462	1	5515	5515		23.042	0	1	72491	+		32643	18266	26866	26891	36009	36009					0.12379790516808953
LLSEILHLL	9	Unmodified	_LLSEILHLL_					0	0	0		nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-4|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	MULTI-MSMS	OvCa99_classI_Rep5	1	525.8331298828125	2	525.831517	1049.64848	0.74458	0.00039152	0.99427	0.00052282	1.7388	0.00091434	525.83194601751	156.25	2.5735	156.25	155.89	158.46	0					107	51	3	0	0	0	0.032351	3	18319	18296;18319;18345		133.47	45.529	1	333000			32644	1524	26867	26892	36010;36011;36012	36011					0.12564363550905
LLSELSSLRA	10	Unmodified	_LLSELSSLRA_					0	0	0			REV__ENSG00000034971|ENST00000037502|MYOC	REV__ENSG00000034971|ENST00000037502|MYOC	MULTI-MSMS	OvCa9_classI_Rep2	2	544.8198852539062	2	544.819138	1087.62372	1.5141	0.00082492	0.92564	0.00050431	2.4398	0.0013292	544.819169146929	88.915	1.4301	87.547	87.086	88.516	-1.3676					102	28	5	0	0	0	0.42962	1	7807	7807		64.207	5.4253	1	381970	+		32645	16598	26868	26893	36013	36013					0.08341683677531364
LLSFMRISF	9	Unmodified	_LLSFMRISF_					0	0	0			REV__nc|ENSG00000214447|A6NFU0|FAM187A	REV__nc|ENSG00000214447|A6NFU0|FAM187A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.8177490234375	2	557.309895	1112.60524	0.034555	1.9258E-05	2.2003	0.0012263	2.2349	0.0012455	557.3109687525722	91.83	1.0145	89.288	89.061	90.076	-2.5425					28	19	2	0	0	0	0.027448	1	8017	8017		44.117	3.5442	1	177040	+		32646	29129	26869	26894	36014	36014					0.053438505019585136
LLSFMRISF	9	Unmodified	_LLSFMRISF_					0	0	0			REV__nc|ENSG00000214447|A6NFU0|FAM187A	REV__nc|ENSG00000214447|A6NFU0|FAM187A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	557.309895	1112.60524	-1.3293	-0.00074082	3.216	0.0017923	1.8867	0.0010515	557.3115204080747	91.381	0.95909	89.357	89.13	90.089	-2.0241	0.034662	0.00050329	NaN	44.117	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199040	+		32647	29129	26869	26894							0.053438505019585136
LLSFNPFVVL	10	Unmodified	_LLSFNPFVVL_					0	0	0		ENST00000480548.5_1_1:67137634-67156055:+|nuORF	ENST00000480548.5_1_1:67137634-67156055:+|nuORF	ENST00000480548.5_1_1:67137634-67156055:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	574.8385620117188	2	574.839342	1147.66413	-0.87532	-0.00050317	-3.2918	-0.0018922	-4.1671	-0.0023954	574.8373813616681	91.362	5.8049	88.819	88.449	94.254	-2.5425					226	116	5	0	0	0	0.50656	1	7981	7981		53.351	0.41475	1	3993100			32648	12530	26870	26895	36015	36015					0.0962065006795001
LLSFTLFLFP	10	Unmodified	_LLSFTLFLFP_					0	0	0			REV__ENSG00000169488|ENST00000305051|OR4K15	REV__ENSG00000169488|ENST00000305051|OR4K15	MULTI-SECPEP	OvCa99_classI_Rep5	1	599.3317260742188	2	599.349543	1196.68453	1.899	0.0011381	0.26796	0.0001606	2.1669	0.0012987	599.3502361458354	102.17	0.42656	102.17	101.87	102.29	0					12	9	2	0	0	0	0.026752	1	11340	11340		35.618	0	1	115390	+		32649	21464	26871	26896	36016	36016					0.09405820727761238
LLSGFALQIQ	10	Unmodified	_LLSGFALQIQ_					0	0	0		chr2:132668537-132670963|296|27.71|0.05|9.18|-|2|LYPD1,None|1	chr2:132668537-132670963|296|27.71|0.05|9.18|-|2|LYPD1,None|1	chr2:132668537-132670963|296|27.71|0.05|9.18|-|2|LYPD1,None|1	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3164672851562	2	545.318774	1088.623	-2.8527	-0.0015556	-0.96726	-0.00052747	-3.8199	-0.0020831	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.6104	1	11714	11714		40.778	7.9657	1	337600			32650	429	26872	26897	36017	36017					0.08222889028479585
LLSGGNLH	8	Unmodified	_LLSGGNLH_					0	0	0		ENST00000419841.2_2_7:99754495-99754932:-|nuORF	ENST00000419841.2_2_7:99754495-99754932:-|nuORF	ENST00000419841.2_2_7:99754495-99754932:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	405.7303161621094	2	405.727052	809.439552	2.8803	0.0011686	4.3665	0.0017716	7.2468	0.0029402	405.7288569808727	101.24	1.3532	101.24	100.94	102.29	0					66	31	4	0	0	0	0.66704	1	11238	11238		50.025	0	1	2330200			32651	11660	26873	26898	36018	36018					0.02720960037470377
LLSGLAVFFL	10	Unmodified	_LLSGLAVFFL_					0	0	0		ENST00000420833.5_1_7:12258097-12270062:+|nuORF;ENSG00000106460|ENST00000396668|TMEM106B	ENST00000420833.5_1_7:12258097-12270062:+|nuORF	ENST00000420833.5_1_7:12258097-12270062:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	540.330810546875	2	540.328611	1078.64267	-1.2676	-0.00068491	4.0333	0.0021793	2.7657	0.0014944	540.3307152267141	139.22	4.0818	138.16	137	141.08	-1.0595					200	82	3	0	0	0	0.76627	1	11355	11355		23.042	0	1	55828			32652	2553	26874	26899	36019	36019					0.1064926503922834
LLSGLVLLL	9	Unmodified	_LLSGLVLLL_					0	0	0			REV__ENSG00000160446|ENST00000372663|ZDHHC12	REV__ENSG00000160446|ENST00000372663|ZDHHC12	MULTI-MSMS	OvCa99_classI_Rep5	1	470.82647705078125	2	470.825704	939.636855	0.66106	0.00031124	-0.10183	-4.7944E-05	0.55923	0.0002633	470.82550127095874	161.06	3.0909	161.06	159.47	162.56	0					174	61	3	0	0	0	0.085069	1	19011	19011		101.21	0	1	597670	+		32653	20660	26875	26900	36020	36020					0.16462166527560385
LLSGSKKL	8	Unmodified	_LLSGSKKL_					0	0	0			REV__nc|ENSG00000147724|Q49AJ0-2|FAM135B	REV__nc|ENSG00000147724|Q49AJ0-2|FAM135B	MULTI-MSMS	OvCa9_classI_Rep2	2	423.27496337890625	2	423.276378	844.538203	-1.0746	-0.00045487	-1.9263	-0.00081535	-3.0009	-0.0012702	423.27545611036373	140.26	1.6211	140.03	139.45	141.07	-0.22696					84	32	4	0	0	0	0.75915	1	14008	14008		20.482	0	1	166850	+		32654	20082	26876	26901	36021	36021					0.10971563282521402
LLSGSKKL	8	Unmodified	_LLSGSKKL_					0	0	0			REV__nc|ENSG00000147724|Q49AJ0-2|FAM135B	REV__nc|ENSG00000147724|Q49AJ0-2|FAM135B	MULTI-MSMS	OvCa9_classI_Rep3	3	423.27459716796875	2	423.276378	844.538203	-1.5369	-0.00065052	-1.6206	-0.00068596	-3.1575	-0.0013365	423.27558847705467	140.82	1.576	139.79	139.38	140.96	-1.0339					74	31	4	0	0	0	0.74394	2	11617	11617;11623		14.664	0	1	296010	+		32655	20082	26876	26901	36022;36023	36022					0.10971563282521402
LLSGVKKLF	9	Unmodified	_LLSGVKKLF_					0	0	0		ENSG00000275835|ENST00000615383|TUBGCP5;nc|ENSG00000275835|Q96RT8-2|TUBGCP5;TUBGCP5|p.S675Lfs*14|1|0.04|ENSG00000275835|chr15:23010066-23010067|-/CTTGCTCTGTCGCCCAGGCTGGAGTGCAG|frameshift_variant	ENSG00000275835|ENST00000615383|TUBGCP5	ENSG00000275835|ENST00000615383|TUBGCP5	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.2774353027344	2	502.828778	1003.643	1.3319	0.00066974	-0.043235	-2.174E-05	1.2887	0.000648	502.8285734229167	123.19	0.51579	123.19	122.95	123.47	0					19	10	2	0	0	0	0.027448	1	14200	14200		44.117	8.4985	1	60266			32656	9575	26877	26902	36024	36024					0.14132684759078984
LLSHASGHFF	10	Unmodified	_LLSHASGHFF_					0	0	0		ENST00000355947.6_1_7:99489832-99489904:-|nuORF	ENST00000355947.6_1_7:99489832-99489904:-|nuORF	ENST00000355947.6_1_7:99489832-99489904:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	558.2854614257812	2	558.285266	1114.55598	2.4495	0.0013675	-0.20326	-0.00011347	2.2462	0.001254	558.2850455754286	95.418	0.53817	95.418	95.161	95.699	0					32	12	3	0	0	0	0.58282	1	10411	10411		44.117	3.5442	1	1742000			32657	10689	26878	26903	36025	36025					0.0032827853738126578
LLSHLNLY	8	Unmodified	_LLSHLNLY_					0	0	0			REV__ENSG00000161847|ENST00000617231|RAVER1	REV__ENSG00000161847|ENST00000617231|RAVER1	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.2969970703125	2	486.779285	971.544017	-0.28692	-0.00013967	-3.9658	-0.0019305	-4.2527	-0.0020701	486.7772271309498	67.266	1.6806	64.605	63.95	65.631	-2.661					77	33	3	0	0	0	0.028476	1	5221	5221		31.955	5.1588	1	280720	+		32658	20711	26879	26904	36026	36026					0.0571066179418267
LLSIAEGIVL	10	Unmodified	_LLSIAEGIVL_					0	0	0		tr|A0A7D7A5X0|A0A7D7A5X0_9CLOTDUF3784domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08360PE=4SV=1	tr|A0A7D7A5X0|A0A7D7A5X0_9CLOTDUF3784domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08360PE=4SV=1	tr|A0A7D7A5X0|A0A7D7A5X0_9CLOTDUF3784domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08360PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	514.3256225585938	2	514.323525	1026.6325	2.3417	0.0012044	-0.092319	-4.7482E-05	2.2494	0.0011569	514.3233503194446	121.59	0.55821	121.59	121.38	121.94	0					21	11	3	0	0	0	0.53885	1	13997	13997		49.442	1.7842	1	298060			32659	36180	26880	26905	36027	36027					0.12024657313986609
LLSIIMANQ	9	Unmodified	_LLSIIMANQ_					0	0	0			REV__tr|A0A7D6VP63|A0A7D6VP63_9CLOTMetalABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17520PE=3SV=1	REV__tr|A0A7D6VP63|A0A7D6VP63_9CLOTMetalABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17520PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.7601318359375	2	501.786253	1001.55795	-1.2176	-0.00061098	-1.1329	-0.00056846	-2.3505	-0.0011794	502.2876149589495	70.271	1.0716	66.79	66.297	67.369	-3.4812					61	21	4	0	0	0	0.027418	1	5282	5282		58.782	0	1	126470	+		32660	31231	26881	26906	36028	36028					0.05723571230964808
LLSKEPDGV	9	Unmodified	_LLSKEPDGV_					0	0	0		ENSG00000137834|ENST00000288840|SMAD6;nc|ENSG00000137834|O43541-2|SMAD6	ENSG00000137834|ENST00000288840|SMAD6	ENSG00000137834|ENST00000288840|SMAD6	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.7987060546875	2	479.266207	956.517862	0.065111	3.1205E-05	0.93439	0.00044782	0.9995	0.00047903	479.26657282191366	60.818	0.46684	60.818	60.392	60.859	0					13	10	2	0	0	0	0.027441	1	5290	5290		49.442	15.269	1	127240			32661	4628	26882	26907	36029	36029					0.03786347832055981
LLSKQSFAKGC	11	Unmodified	_LLSKQSFAKGC_					0	0	0			REV__ENSG00000196458|ENST00000360187|ZNF605	REV__ENSG00000196458|ENST00000360187|ZNF605	MULTI-MSMS	OvCa9_classI_Rep2	2	591.3223876953125	2	591.320991	1180.62743	0.49894	0.00029503	2.6748	0.0015817	3.1738	0.0018767	591.3225047391371	42.256	1.1351	39.547	39.275	40.41	-2.7097					60	22	4	0	0	0	0.68684	1	2262	2262		34.173	0	1	307350	+		32662	22830	26883	26908	36030	36030					0.044340301797319626
LLSKRLEP	8	Unmodified	_LLSKRLEP_					0	0	0			REV__CACNA1G|p.L1529Qfs*112|1|0.06|ENSG00000006283|chr17:50607900-50607901|TG/-|frameshift_variant	REV__CACNA1G|p.L1529Qfs*112|1|0.06|ENSG00000006283|chr17:50607900-50607901|TG/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	478.3014221191406	2	478.300384	954.586216	-0.17159	-8.2071E-05	0.10288	4.9206E-05	-0.068713	-3.2866E-05	478.30024230289604	58.719	1.3509	58.719	58.488	59.839	0					59	34	3	0	0	0	0.42208	1	5035	5035		85.359	3.119	1	4724600	+		32663	15728	26884	26909	36031	36031					0.10710637202566886
LLSKVFSLL	9	Unmodified	_LLSKVFSLL_					0	0	0		ENSG00000204694|ENST00000377149|OR11A1	ENSG00000204694|ENST00000377149|OR11A1	ENSG00000204694|ENST00000377149|OR11A1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.27325439453125	2	510.328611	1018.64267	0.18781	9.5845E-05	-0.035024	-1.7874E-05	0.15279	7.7971E-05	510.32835024340665	115.15	1.1016	113.75	113.46	114.56	-1.3977					25	19	2	0	0	0	0.027462	1	10692	10692		38.806	1.647	1	20214			32664	9020	26885	26910	36032	36032					0.13409265039229012
LLSKVFSLL	9	Unmodified	_LLSKVFSLL_					0	0	0		ENSG00000204694|ENST00000377149|OR11A1	ENSG00000204694|ENST00000377149|OR11A1	ENSG00000204694|ENST00000377149|OR11A1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	510.328611	1018.64267	0.9021	0.00046037	0.94755	0.00048356	1.8496	0.00094393	510.32906846355144	114.16	0.45689	114.16	113.92	114.38	0	0.25137	0.00036606	NaN	38.806	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182650			32665	9020	26885	26910							0.13409265039229012
LLSKVFSLL	9	Unmodified	_LLSKVFSLL_					0	0	0		ENSG00000204694|ENST00000377149|OR11A1	ENSG00000204694|ENST00000377149|OR11A1	ENSG00000204694|ENST00000377149|OR11A1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	510.328611	1018.64267	-0.28831	-0.00014713	0.4104	0.00020944	0.12209	6.2305E-05	510.3286645038689	114.88	0.6906	113.82	113.5	114.19	-1.055	-0.088137	-0.00018218	NaN	38.806	18	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12636			32666	9020	26885	26910							0.13409265039229012
LLSLCIQLS	9	Unmodified	_LLSLCIQLS_					0	0	0			REV__ENST00000394422.7_2_X:129042695-129045055:+|nuORF	REV__ENST00000394422.7_2_X:129042695-129045055:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	495.2864990234375	2	495.288628	988.562703	0.20595	0.00010201	-3.7088	-0.0018369	-3.5028	-0.0017349	495.28664794488304	106.83	1.5678	106.52	106.13	107.69	-0.30836					90	31	4	0	0	0	0.10363	1	9959	9959		96.19	5.8206	1	400820	+		32667	25298	26886	26911	36033	36033					0.06796455373739718
LLSLEKSLV	9	Unmodified	_LLSLEKSLV_					0	0	0		tr|A0A7D6VZY5|A0A7D6VZY5_9CLOTMagnesiumtransporterCorAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21860PE=3SV=1	tr|A0A7D6VZY5|A0A7D6VZY5_9CLOTMagnesiumtransporterCorAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21860PE=3SV=1	tr|A0A7D6VZY5|A0A7D6VZY5_9CLOTMagnesiumtransporterCorAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21860PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	501.3038635253906	2	501.3157	1000.61685	-1.0679	-0.00053536	-0.73176	-0.00036684	-1.7997	-0.00090221	501.31521629634483	100.4	1.0911	98.792	98.565	99.656	-1.6053					40	21	2	0	0	0	0.027418	1	6800	6800		68.787	19.345	1	111630			32668	35367	26887	26912	36034	36034					0.11656370796936244
LLSLIHLVL	9	Unmodified	_LLSLIHLVL_					0	0	0		OR2A7|p.Q226Rfs*21|1|0.07|ENSG00000243896|chr7:144258953-144258953|G/-|frameshift_variant;ENSG00000243896|ENST00000641841|OR2A7;ENSG00000180658|ENST00000315453|OR2A4	OR2A7|p.Q226Rfs*21|1|0.07|ENSG00000243896|chr7:144258953-144258953|G/-|frameshift_variant	OR2A7|p.Q226Rfs*21|1|0.07|ENSG00000243896|chr7:144258953-144258953|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	510.8086853027344	2	510.844428	1019.6743	-0.52331	-0.00026733	-1.7525	-0.00089525	-2.2758	-0.0011626	510.8433604499649	99.946	0.25972	98.261	98.038	98.297	-1.685					6	4	2	0	0	0	0.027462	1	6754	6754		12.959	0	1	14622			32669	7880	26888	26913	36035	36035					0.16525257793159653
LLSLLSSGHC	10	Unmodified	_LLSLLSSGHC_					0	0	0			REV__ENSG00000163728|ENST00000296015|TTC14	REV__ENSG00000163728|ENST00000296015|TTC14	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.3017578125	2	515.273509	1028.53247	-0.40595	-0.00020918	-0.73947	-0.00038103	-1.1454	-0.0005902	515.2717569133571	51.082	0.34144	51.082	50.907	51.248	0					13	7	3	0	0	0	0.028033	1	3906	3906		87.754	8.0417	1	134880	+		32670	20879	26889	26914	36036	36036					0.01934096708555444
LLSLRPRPRP	10	Unmodified	_LLSLRPRPRP_					0	0	0		nc|ENSG00000126254|Q9BTD8-4|RBM42;nc|ENSG00000126254|Q9BTD8-2|RBM42;nc|ENSG00000126254|Q9BTD8-3|RBM42;ENSG00000126254|ENST00000262633|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	nc|ENSG00000126254|Q9BTD8-4|RBM42	MULTI-MSMS	OvCa9_classI_Rep3	3	402.25927734375	3	402.259413	1203.75641	2.4514	0.00098611	-2.5146	-0.0010115	-0.063205	-2.5425E-05	402.2583865994798	63.638	2.5051	60.645	60.102	62.607	-2.9933					122	49	5	0	0	0	0.61634	1	2367	2367		40.058	6.1365	1	686330			32671	3776	26890	26915	36037	36037					0.1626817292483338
LLSLVTGLK	9	Unmodified	_LLSLVTGLK_					0	0	0		ENST00000462917.1_1_17:39847120-39847177:+|nuORF	ENST00000462917.1_1_17:39847120-39847177:+|nuORF	ENST00000462917.1_1_17:39847120-39847177:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.31341552734375	2	472.312961	942.611368	-1.2664	-0.00059814	0.93465	0.00044145	-0.33175	-0.00015669	472.31322128573623	107.79	1.7939	105.91	105.38	107.17	-1.8784					71	35	3	0	0	0	0.094616	1	9857	9857		98.629	13.714	1	193910			32672	12215	26891	26916	36038	36038					0.1377669200512628
LLSLVTGLK	9	Unmodified	_LLSLVTGLK_					0	0	0		ENST00000462917.1_1_17:39847120-39847177:+|nuORF	ENST00000462917.1_1_17:39847120-39847177:+|nuORF	ENST00000462917.1_1_17:39847120-39847177:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	472.312961	942.611368	-0.20107	-9.4966E-05	0.12341	5.829E-05	-0.077651	-3.6676E-05	472.31289411056986	106.3	2.7113	105.86	105.5	108.21	-0.43642	-0.057438	9.7154E-05	NaN	98.629	94	54	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181980			32673	12215	26891	26916							0.1377669200512628
LLSLVTGLK	9	Unmodified	_LLSLVTGLK_					0	0	0		ENST00000462917.1_1_17:39847120-39847177:+|nuORF	ENST00000462917.1_1_17:39847120-39847177:+|nuORF	ENST00000462917.1_1_17:39847120-39847177:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	472.312961	942.611368	0.88506	0.00041803	-1.4485	-0.00068413	-0.5634	-0.0002661	472.3121709334399	107.25	2.0317	105.98	105.67	107.7	-1.267	0.065387	-0.0013877	NaN	98.629	79	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186870			32674	12215	26891	26916							0.1377669200512628
LLSLVYLN	8	Unmodified	_LLSLVYLN_					0	0	0			REV__tr|A0A7D6VSB1|A0A7D6VSB1_9CLOTHypoxanthinephosphoribosyltransferaseOS=ClostridiumintestinaleOX=36845GN=hptPE=3SV=1	REV__tr|A0A7D6VSB1|A0A7D6VSB1_9CLOTHypoxanthinephosphoribosyltransferaseOS=ClostridiumintestinaleOX=36845GN=hptPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.76422119140625	2	467.784036	933.553519	-0.48178	-0.00022537	-3.3015	-0.0015444	-3.7833	-0.0017697	467.78218271435185	37.948	0.44656	37.948	37.761	38.207	0					15	9	2	0	0	0	0.028476	1	2116	2116		28.254	14.479	1	137140	+		32675	31482	26892	26917	36039	36039					0.08408430079691698
LLSMEFFSLM	10	Oxidation (M)	_LLSMEFFSLM(Oxidation (M))_		LLSMEFFSLM(1)		LLSM(-45)EFFSLM(45)	0	0	1			REV__ENST00000565493.1_1_20:34637479-34637734:-|nuORF	REV__ENST00000565493.1_1_20:34637479-34637734:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	617.2984008789062	2	617.298336	1232.58212	2.4986	0.0015424	-2.2689	-0.0014006	0.22966	0.00014177	617.2975506194416	107.89	0.89189	107.89	107.52	108.41	0					40	20	3	0	0	0	0.52321	1	12210	12210		51.335	8.4712	2	826940	+		32676	27687	26893	26918	36040	36040		617			-0.024869563976835707
LLSMNYLP	8	Unmodified	_LLSMNYLP_					0	0	0			REV__ENST00000595316.5_1_19:51376719-51380013:+|nuORF	REV__ENST00000595316.5_1_19:51376719-51380013:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	476.22186279296875	2	475.754421	949.494289	0.033921	1.6138E-05	3.4827	0.0016569	3.5166	0.001673	475.75598319566643	117.26	0.89164	116.22	115.84	116.74	-1.0324					31	17	2	0	0	0	0.028476	1	8756	8756		35.618	0	1	51579	+		32677	21306	26894	26919	36041	36041					0.017522107938702902
LLSNEPVEN	9	Unmodified	_LLSNEPVEN_					0	0	0		tr|A0A553SMB3|A0A553SMB3_NIACILacIfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22220PE=4SV=1	tr|A0A553SMB3|A0A553SMB3_NIACILacIfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22220PE=4SV=1	tr|A0A553SMB3|A0A553SMB3_NIACILacIfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22220PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.758544921875	2	507.758746	1013.50294	-0.087912	-4.4638E-05	-1.2341	-0.00062664	-1.3221	-0.00067128	507.7579372157221	115.82	0.84155	114.42	114.07	114.91	-1.3977					42	16	4	0	0	0	0.26076	1	10787	10787		67.494	0	1	144850			32678	33821	26895	26920	36042	36042					-0.003271440359526423
LLSNLVQHL	9	Unmodified	_LLSNLVQHL_					0	0	0		tr|A0A553ST78|A0A553ST78_NIACIPucRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04375PE=3SV=1	tr|A0A553ST78|A0A553ST78_NIACIPucRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04375PE=3SV=1	tr|A0A553ST78|A0A553ST78_NIACIPucRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04375PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	518.8141479492188	2	518.811116	1035.60768	1.6552	0.00085872	-0.19597	-0.00010167	1.4592	0.00075705	518.8108823134233	100.2	0.46091	100.2	99.984	100.44	0					26	10	3	0	0	0	0.064985	1	11106	11106		110.12	0	1	1435900			32679	34466	26896	26921	36043	36043					0.09130022231261137
LLSNMPQWRLI	11	Unmodified	_LLSNMPQWRLI_					0	0	0			REV__ENST00000331457.8_1_22:31796711-31799146:+|nuORF	REV__ENST00000331457.8_1_22:31796711-31799146:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	457.7796936035156	3	457.591952	1369.75403	-0.71001	-0.00032489	0.86329	0.00039503	0.15328	7.0141E-05	457.5923012361471	51.171	0.65205	47.998	47.671	48.323	-3.1734					21	12	2	0	0	0	0.025668	1	2998	2998		50.034	1.432	1	52579	+		32680	24536	26897	26922	36044	36044					0.0839395640487055
LLSNMPQWRLI	11	Unmodified	_LLSNMPQWRLI_					0	0	0			REV__ENST00000331457.8_1_22:31796711-31799146:+|nuORF	REV__ENST00000331457.8_1_22:31796711-31799146:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	457.591952	1369.75403	-0.36688	-0.00016788	0.57364	0.00026249	0.20676	9.4612E-05	457.5921413880191	50.605	0.99122	47.811	47.48	48.472	-2.794	-0.093196	-0.00017586	NaN	50.034	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32576	+		32681	24536	26897	26922							0.0839395640487055
LLSNSLILL	9	Unmodified	_LLSNSLILL_					0	0	0			REV__nc|ENSG00000153064|Q8NDB2-3|BANK1	REV__nc|ENSG00000153064|Q8NDB2-3|BANK1	MULTI-MSMS	OvCa9_classI_Rep3	3	493.31768798828125	2	493.318243	984.621933	1.2328	0.00060816	-1.4512	-0.00071588	-0.21836	-0.00010772	493.3174202897749	124.35	2.0803	123.31	122.97	125.05	-1.0377					98	39	4	0	0	0	0.16562	1	9648	9648		82.241	0	1	770890	+		32682	20318	26898	26923	36045	36045					0.12900674659567812
LLSPGLLMGT	10	Unmodified	_LLSPGLLMGT_					0	0	0		nc|ENSG00000141527|Q9BXL6-3|CARD14	nc|ENSG00000141527|Q9BXL6-3|CARD14	nc|ENSG00000141527|Q9BXL6-3|CARD14	MULTI-MSMS	OvCa9_classI_Rep2	2	501.2880554199219	2	501.288628	1000.5627	-0.80197	-0.00040202	4.3304	0.0021708	3.5285	0.0017688	501.2906816095173	135.63	4.8104	135.4	133.71	138.52	-0.22697					221	98	3	0	0	0	0.74374	1	13572	13572		25.574	2.0514	1	70595			32683	15065	26899	26924	36046	36046					0.06244455373735036
LLSPPRAL	8	Unmodified	_LLSPPRAL_					0	0	0		ENST00000261023.7_2_2:187454800-187466828:+|nuORF	ENST00000261023.7_2_2:187454800-187466828:+|nuORF	ENST00000261023.7_2_2:187454800-187466828:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	433.7771911621094	2	433.776545	865.538538	1.3486	0.00058498	-1.5043	-0.00065254	-0.15575	-6.7562E-05	433.775716822817	84.294	1.329	81.632	81.265	82.594	-2.6629					64	27	3	0	0	0	0.65062	1	7048	7048		53.351	3.3269	1	776900			32684	9855	26900	26925	36047	36047					0.10038983002368695
LLSPRLTMVPR	11	Unmodified	_LLSPRLTMVPR_					0	0	0			REV__ENST00000551694.5_1_12:49318004-49319277:-|nuORF	REV__ENST00000551694.5_1_12:49318004-49319277:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8823852539062	2	641.886832	1281.75911	-4.0037	-0.0025699	-3.0808	-0.0019775	-7.0844	-0.0045474	642.3862707583961	149.94	3.9275	149.71	147.52	151.45	-0.22696					225	78	5	0	0	0	0.71191	1	15277	15277		25.574	2.0514	1	222110	+		32685	27486	26901	26926	36048	36048					0.12950260267462
LLSPTGALAVN	11	Unmodified	_LLSPTGALAVN_					0	0	0		ENST00000583473.5_1_17:63133567-63149541:+|nuORF	ENST00000583473.5_1_17:63133567-63149541:+|nuORF	ENST00000583473.5_1_17:63133567-63149541:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.2896728515625	2	528.308406	1054.60226	-0.30246	-0.00015979	-4.3331	-0.0022892	-4.6356	-0.002449	528.8061109983003	47.282	0.47723	47.282	47.03	47.508	0					25	10	3	0	0	0	0.025528	1	3383	3383		28.081	0	1	155740			32686	14013	26902	26927	36049	36049					0.07714298648807016
LLSPTLRPR	9	Unmodified	_LLSPTLRPR_					0	0	0		nc|ENSG00000133454|Q8IUG5-2|MYO18B;ENSG00000133454|ENST00000335473|MYO18B;nc|ENSG00000133454|Q8IUG5-3|MYO18B	nc|ENSG00000133454|Q8IUG5-2|MYO18B	nc|ENSG00000133454|Q8IUG5-2|MYO18B	MULTI-MSMS	OvCa9_classI_Rep3	3	526.8314819335938	2	526.832383	1051.65021	-0.02688	-1.4162E-05	2.9838	0.001572	2.9569	0.0015578	526.8321214850487	69.898	2.0087	67.178	66.856	68.864	-2.7196					118	39	6	0	0	0	0.62352	1	3200	3200		29.15	0	1	1842000			32687	4222	26903	26928	36050	36050					0.12645417359499334
LLSQGALEVL	10	Unmodified	_LLSQGALEVL_					0	0	0			REV__PRAME|p.N331Tfs*9|1|0.1|ENSG00000185686|chr22:22548607-22548607|A/-|frameshift_variant	REV__PRAME|p.N331Tfs*9|1|0.1|ENSG00000185686|chr22:22548607-22548607|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	521.8125610351562	2	521.810782	1041.60701	1.1512	0.00060071	1.0131	0.00052867	2.1643	0.0011294	521.8111501604452	92.194	0.59414	92.194	91.92	92.515	0					24	13	2	0	0	0	0.26424	1	9959	9959		85.161	7.8432	1	1617300	+		32688	22519	26904	26929	36051	36051					0.08787182791570558
LLSQGWSLAL	10	Unmodified	_LLSQGWSLAL_					0	0	0		ENST00000527941.5_3_1:52875172-52889607:-|nuORF	ENST00000527941.5_3_1:52875172-52889607:-|nuORF	ENST00000527941.5_3_1:52875172-52889607:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	544.3133544921875	2	544.310949	1086.60735	2.0329	0.0011065	-1.2185	-0.00066325	0.81435	0.00044326	544.3096665994037	87.083	1.6189	87.083	86.511	88.13	0					60	38	3	0	0	0	0.24425	1	9202	9202		87.696	13.441	1	2751600			32689	13245	26905	26930	36052	36052					0.06750602511419856
LLSQVSPRLL	10	Unmodified	_LLSQVSPRLL_					0	0	0		ENSG00000003393|ENST00000264276|ALS2;nc|ENSG00000003393|Q96Q42-3|ALS2;ENST00000482789.5_1_2:202606311-202633608:-|nuORF;ALS2|p.L893Rfs*19|1|0.06|ENSG00000003393|chr2:201729088-201729089|-/ATGAAAGCCCATGTAGACCTCGG|frameshift_variant;ENST00000482891.5_1_2:202587756-202633608:-|nuORF	ENSG00000003393|ENST00000264276|ALS2	ENSG00000003393|ENST00000264276|ALS2	MULTI-MSMS	OvCa9_classI_Rep3	3	563.3536987304688	2	563.353148	1124.69174	1.3942	0.00078545	-0.18057	-0.00010173	1.2137	0.00068372	563.3529214369328	62.001	0.76881	58.933	58.707	59.476	-3.0685					33	18	3	0	0	0	0.75313	1	2214	2214		24.519	3.5723	1	22286			32690	818	26906	26931	36053	36053					0.1343855332820567
LLSRGALS	8	Unmodified	_LLSRGALS_					0	0	0			REV__ENST00000599637.5_1_19:53594692-53594911:-|nuORF	REV__ENST00000599637.5_1_19:53594692-53594911:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	408.75067138671875	2	408.750527	815.486502	0.69326	0.00028337	-0.28886	-0.00011807	0.4044	0.0001653	408.75029249633474	33.61	0.72696	33.61	33.434	34.161	0					23	14	3	0	0	0	0.71369	1	1562	1562		40.573	3.4135	1	158260	+		32691	28022	26907	26932	36054	36054					0.07137819588615457
LLSRLGWHL	9	Unmodified	_LLSRLGWHL_					0	0	0			REV__ENST00000484933.6_1_1:87597705-87598381:+|nuORF	REV__ENST00000484933.6_1_1:87597705-87598381:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	547.8264770507812	2	547.827101	1093.63965	-3.828	-0.0020971	2.5365	0.0013895	-1.2916	-0.00070755	547.8283345690601	154.13	2.0065	153.91	153.15	155.16	-0.22697					93	45	3	0	0	0	0.71234	1	15742	15742		13.775	1.5685	1	59433	+		32692	26554	26908	26933	36055	36055					0.09657434705081869
LLSRPALL	8	Unmodified	_LLSRPALL_					0	0	0		ENST00000482282.5_1_3:48670520-48671236:-|nuORF	ENST00000482282.5_1_3:48670520-48671236:-|nuORF	ENST00000482282.5_1_3:48670520-48671236:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	441.7921447753906	2	441.792195	881.569838	-0.16298	-7.2003E-05	0.067152	2.9667E-05	-0.095829	-4.2336E-05	441.7920815049728	99.795	1.3382	98.11	97.727	99.065	-1.685					65	26	4	0	0	0	0.68714	1	6732	6732		45.952	1.8352	1	490170			32693	12566	26909	26934	36056	36056					0.12431556036472102
LLSRVPLVGL	10	Unmodified	_LLSRVPLVGL_					0	0	0			REV__nc|ENSG00000104728|O15013-7|ARHGEF10	REV__nc|ENSG00000104728|O15013-7|ARHGEF10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.2510375976562	2	533.852784	1065.69102	-0.60896	-0.0003251	0.72246	0.00038569	0.1135	6.0592E-05	533.8531567753637	128.53	0.90077	127.08	126.79	127.69	-1.4565					29	17	2	0	0	0	0.026891	1	12301	12301		39.253	24.388	1	52941	+		32694	17676	26910	26935	36057	36057					0.16079758679143197
LLSRVPLVGL	10	Unmodified	_LLSRVPLVGL_					0	0	0			REV__nc|ENSG00000104728|O15013-7|ARHGEF10	REV__nc|ENSG00000104728|O15013-7|ARHGEF10	MULTI-MATCH	OvCa9_classI_Rep3	3		2	533.852784	1065.69102	1.5422	0.00082328	-1.4515	-0.00077488	0.090655	4.8397E-05	533.8519851105028	128.21	0.59282	127.12	126.92	127.52	-1.0933	0.020998	-0.0019381	NaN	39.253	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13224	+		32695	17676	26910	26935							0.16079758679143197
LLSSADSSHK	10	Unmodified	_LLSSADSSHK_					0	0	0			REV__nc|ENSG00000095787|Q9BTA9-3|WAC	REV__nc|ENSG00000095787|Q9BTA9-3|WAC	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.3046875	2	522.769645	1043.52474	-0.35348	-0.00018479	-0.30427	-0.00015906	-0.65775	-0.00034385	522.7694046016219	48.031	0.34658	45.322	45.182	45.529	-2.7097					8	6	2	0	0	0	0.027174	1	2947	2947		20.947	0	1	7130	+		32696	17297	26911	26936	36058	36058					0.004716607126283634
LLSSAQIETL	10	Unmodified	_LLSSAQIETL_					0	0	0		ENSG00000269964|ENST00000684080|MEI4	ENSG00000269964|ENST00000684080|MEI4	ENSG00000269964|ENST00000684080|MEI4	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.8077392578125	2	537.805697	1073.59684	-0.95901	-0.00051576	1.6634	0.00089458	0.70438	0.00037882	537.8066148682773	98.63	1.9396	96.251	95.773	97.713	-2.3786					88	37	3	0	0	0	0.37436	1	8776	8776		71.877	0	1	602400			32697	9544	26912	26937	36059	36059					0.06298575066330159
LLSSAVVAL	9	Unmodified	_LLSSAVVAL_					0	0	0		tr|A0A7D6VNP0|A0A7D6VNP0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13400PE=4SV=1	tr|A0A7D6VNP0|A0A7D6VNP0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13400PE=4SV=1	tr|A0A7D6VNP0|A0A7D6VNP0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13400PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	436.7748718261719	2	436.776211	871.537869	-2.6718	-0.001167	-0.40157	-0.0001754	-3.0734	-0.0013424	436.7759504548302	144.44	1.6886	143.47	143.1	144.79	-0.97299					107	33	5	0	0	0	0.64339	1	12083	12083		26.796	1.3459	1	989010			32698	34719	26913	26938	36060	36060					0.09696143562666748
LLSSEATHII	10	Unmodified	_LLSSEATHII_					0	0	0		nc|ENSG00000171502|Q17RW2-2|COL24A1;ENSG00000171502|ENST00000370571|COL24A1	nc|ENSG00000171502|Q17RW2-2|COL24A1	nc|ENSG00000171502|Q17RW2-2|COL24A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.754150390625	2	542.305864	1082.59717	2.7246	0.0014776	2.0842	0.0011303	4.8088	0.0026078	542.3065657583775	116.03	0.77824	116.03	115.77	116.55	0					47	16	4	0	0	0	0.026697	1	13291	13291		45.952	10.334	1	1060600			32699	7207	26914	26939	36061	36061					0.05917994786182135
LLSSMDLNPE	10	Unmodified	_LLSSMDLNPE_					0	0	0		ENST00000490473.1_1_22:38522912-38523176:-|nuORF	ENST00000490473.1_1_22:38522912-38523176:-|nuORF	ENST00000490473.1_1_22:38522912-38523176:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	560.2822265625	2	559.773539	1117.53253	1.2095	0.00067705	3.9708	0.0022227	5.1803	0.0028998	559.7757253829897	159.47	0.62128	159.47	159.28	159.91	0					21	12	3	0	0	0	0.58067	1	18700	18700		44.377	1.981	1	59557			32700	12696	26915	26940	36062	36062					-0.021539480821274992
LLSSRRTQ	8	Unmodified	_LLSSRRTQ_					0	0	0		ENSG00000160447|ENST00000291906|PKN3	ENSG00000160447|ENST00000291906|PKN3	ENSG00000160447|ENST00000291906|PKN3	MULTI-MSMS	OvCa9_classI_Rep2	2	480.78125	2	480.78289	959.551228	-1.0055	-0.00048344	0.35437	0.00017038	-0.65115	-0.00031306	480.7829878496556	48.434	1.9358	45.674	45.23	47.166	-2.7603					133	38	6	0	0	0	0.60331	1	3034	3034		63.306	7.8021	1	1103900			32701	6067	26916	26941	36063	36063					0.06983394394615061
LLSSVLYVV	9	Unmodified	_LLSSVLYVV_					0	0	0		ENST00000512383.1_1_5:75964652-75969784:+|nuORF	ENST00000512383.1_1_5:75964652-75969784:+|nuORF	ENST00000512383.1_1_5:75964652-75969784:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	496.8050537109375	2	496.804968	991.595384	1.3482	0.00066979	-3.9678	-0.0019712	-2.6196	-0.0013014	496.80292732126213	147.55	2.0526	147.55	147.21	149.26	0					53	41	2	0	0	0	0.42057	1	17265	17265		50.025	0	1	120490			32702	12995	26917	26942	36064	36064					0.09924985768236638
LLSSVQLL	8	Unmodified	_LLSSVQLL_					0	0	0		ENSG00000197599|ENST00000389176|CCDC154	ENSG00000197599|ENST00000389176|CCDC154	ENSG00000197599|ENST00000389176|CCDC154	MULTI-MSMS	OvCa9_classI_Rep2	2	436.7745361328125	2	436.776211	871.537869	-1.3218	-0.00057733	-1.7819	-0.0007783	-3.1037	-0.0013556	436.77534043072393	144.04	2.131	143.81	143.2	145.33	-0.22697					119	42	4	0	0	0	0.73288	1	14510	14510		35.201	4.6971	1	537180			32703	8726	26918	26943	36065	36065					0.09696143562666748
LLSSYSFSK	9	Unmodified	_LLSSYSFSK_					0	0	0			REV__nc|ENSG00000278970|Q8NB50-2|ZFP62	REV__nc|ENSG00000278970|Q8NB50-2|ZFP62	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.8295288085938	2	516.274032	1030.53351	3.0695	0.0015847	-3.2195	-0.0016621	-0.14994	-7.7411E-05	516.2722566231485	133.95	1.0374	132.43	132.14	133.18	-1.5257					51	20	3	0	0	0	0.027462	1	13007	13007		32.812	3.6629	1	62616	+		32704	22855	26919	26944	36066	36066					0.01946634349087617
LLSTDKGIL	9	Unmodified	_LLSTDKGIL_					0	0	0			REV__ENSG00000058063|ENST00000323116|ATP11B	REV__ENSG00000058063|ENST00000323116|ATP11B	MULTI-MSMS	OvCa9_classI_Rep3	3	480.29144287109375	2	480.292225	958.569897	1.9432	0.00093331	-2.2557	-0.0010834	-0.31248	-0.00015008	480.29095784813535	111.84	1.4316	110.74	110.2	111.63	-1.1038					69	28	4	0	0	0	0.31747	1	8162	8162		60.972	3.1607	1	400640	+		32705	16724	26920	26945	36067	36067					0.08895511245816579
LLSTIRNAN	9	Unmodified	_LLSTIRNAN_					0	0	0			REV__nc|ENSG00000163946|Q9UK61-3|TASOR	REV__nc|ENSG00000163946|Q9UK61-3|TASOR	MULTI-MSMS	OvCa9_classI_Rep2	2	501.289306640625	2	501.290548	1000.56654	-0.80197	-0.00040202	0.50048	0.00025089	-0.30149	-0.00015113	501.2906816095173	135.63	4.8104	135.4	133.71	138.52	-0.22697					221	98	3	0	0	0	0.62352	1	13566	13566		29.15	6.1071	1	70595	+		32706	20918	26921	26946	36068	36068					0.06628261191792717
LLSTIVLAS	9	Unmodified	_LLSTIVLAS_					0	0	0		ENST00000409465.5_1_2:191878499-191878559:-|nuORF	ENST00000409465.5_1_2:191878499-191878559:-|nuORF	ENST00000409465.5_1_2:191878499-191878559:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	458.787841796875	2	458.789318	915.564084	-2.0925	-0.00096003	-0.91741	-0.0004209	-3.0099	-0.0013809	458.7887619770069	147.55	1.9467	147.32	146.82	148.77	-0.22697					104	38	4	0	0	0	0.6653	1	14943	14943		24.203	1.1603	1	613710			32707	11527	26922	26947	36069	36069					0.10292412734133904
LLSTIVLAS	9	Unmodified	_LLSTIVLAS_					0	0	0		ENST00000409465.5_1_2:191878499-191878559:-|nuORF	ENST00000409465.5_1_2:191878499-191878559:-|nuORF	ENST00000409465.5_1_2:191878499-191878559:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	458.787841796875	2	458.789318	915.564084	-3.9056	-0.0017918	0.66227	0.00030384	-3.2433	-0.001488	458.7895332206503	147.83	2.1995	146.88	146.25	148.45	-0.9512					131	43	4	0	0	0	0.6653	1	12455	12455		24.203	3.7209	1	949810			32708	11527	26922	26947	36070	36070					0.10292412734133904
LLSTIVLAS	9	Unmodified	_LLSTIVLAS_					0	0	0		ENST00000409465.5_1_2:191878499-191878559:-|nuORF	ENST00000409465.5_1_2:191878499-191878559:-|nuORF	ENST00000409465.5_1_2:191878499-191878559:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.78802490234375	2	458.789318	915.564084	-2.1404	-0.00098197	-0.94151	-0.00043196	-3.0819	-0.0014139	458.78877967166295	148.29	2.0994	146.85	146.22	148.32	-1.435					112	42	4	0	0	0	0.6653	1	14618	14618		24.203	1.166	1	1351300			32709	11527	26922	26947	36071	36071					0.10292412734133904
LLSTKLEL	8	Unmodified	_LLSTKLEL_					0	0	0			REV__nc|ENSG00000056487|Q96EK2-4|PHF21B	REV__nc|ENSG00000056487|Q96EK2-4|PHF21B	MULTI-MSMS	OvCa9_classI_Rep2	2	458.7877502441406	2	458.789318	915.564084	-2.0925	-0.00096003	-0.91741	-0.0004209	-3.0099	-0.0013809	458.7887619770069	147.55	1.9467	147.32	146.82	148.77	-0.22697					104	38	4	0	0	0	0.7043	1	14888	14888		42.474	0	1	613710	+		32710	16716	26923	26948	36072	36072					0.10292412734122536
LLSTKRKE	8	Unmodified	_LLSTKRKE_					0	0	0			REV__NETO1|p.P468Lfs*24|1|0.06|ENSG00000166342|chr18:72750200-72750201|-/A|frameshift_variant	REV__NETO1|p.P468Lfs*24|1|0.06|ENSG00000166342|chr18:72750200-72750201|-/A|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	488.7331237792969	2	487.803291	973.59203	-0.039003	-1.9026E-05	-0.59874	-0.00029207	-0.63774	-0.00031109	487.80284469754014	40.087	0.69705	37.377	37.052	37.749	-2.7097					18	13	2	0	0	0	0.028476	1	1961	1961		35.618	0	1	27812	+		32711	21179	26924	26949	36073	36073					0.10417735714224818
LLSTKRKE	8	Unmodified	_LLSTKRKE_					0	0	0			REV__NETO1|p.P468Lfs*24|1|0.06|ENSG00000166342|chr18:72750200-72750201|-/A|frameshift_variant	REV__NETO1|p.P468Lfs*24|1|0.06|ENSG00000166342|chr18:72750200-72750201|-/A|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	487.803291	973.59203	-0.47889	-0.0002336	-0.062238	-3.036E-05	-0.54113	-0.00026396	487.8031382713099	40.299	0.62664	37.344	37.162	37.789	-2.9541	-0.016223	0.00016651	NaN	35.618	32	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106320	+		32712	21179	26924	26949							0.10417735714224818
LLSTKTVK	8	Unmodified	_LLSTKTVK_					0	0	0		tr|A0A7D6VZK5|A0A7D6VZK5_9CLOTThreonine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=thrSPE=3SV=1	tr|A0A7D6VZK5|A0A7D6VZK5_9CLOTThreonine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=thrSPE=3SV=1	tr|A0A7D6VZK5|A0A7D6VZK5_9CLOTThreonine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=thrSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	445.28778076171875	2	445.289485	888.564418	-2.8277	-0.0012591	-0.24741	-0.00011017	-3.0751	-0.0013693	445.2892592248726	144.41	1.3401	143.44	143.15	144.49	-0.97301					68	26	4	0	0	0	0.73417	1	12061	12061		9.4706	0	1	266430			32713	35361	26925	26950	36074	36074					0.11567832453999927
LLSTTVQPN	9	Unmodified	_LLSTTVQPN_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-MSMS	OvCa99_classI_Rep5	1	486.7745056152344	2	486.771657	971.528761	0.9215	0.00044856	3.5761	0.0017407	4.4976	0.0021893	486.7731785720247	150.92	0.50211	150.92	150.54	151.04	0					17	9	2	0	0	0	0.27001	1	17668	17668		66.429	3.123	1	65612			32714	3077	26926	26951	36075	36075					0.041857502063294305
LLSVGSDPTN	10	Unmodified	_LLSVGSDPTN_					0	0	0			REV__ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant	REV__ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.7601318359375	2	501.758746	1001.50294	-1.2262	-0.00061525	0.8754	0.00043924	-0.35078	-0.00017601	501.75920761548286	69.754	2.5299	66.273	65.762	68.292	-3.4812					77	51	2	0	0	0	0.44431	1	5282	5282		62.107	0	1	4689700	+		32715	23017	26927	26952	36076	36076					0.002248559640520398
LLSVGVVVYLC	11	Unmodified	_LLSVGVVVYLC_					0	0	0			REV__ENSG00000104290|ENST00000240093|FZD3	REV__ENSG00000104290|ENST00000240093|FZD3	MULTI-MSMS	OvCa9_classI_Rep4_	4	583.3530883789062	2	582.838485	1163.66242	-0.95173	-0.00055471	-1.8267	-0.0010647	-2.7784	-0.0016194	582.8376347505806	20.658	0.69285	19.319	18.902	19.595	-1.3386					15	13	2	0	0	0	0.70148	1	54	54		29.15	2.4566	1	9989.8	+		32716	17655	26928	26953	36077	36077					0.0871327298768847
LLSVTQWPL	9	Unmodified	_LLSVTQWPL_					0	0	0		ENST00000396573.6_1_16:9856161-9856311:-|nuORF	ENST00000396573.6_1_16:9856161-9856311:-|nuORF	ENST00000396573.6_1_16:9856161-9856311:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	528.8138427734375	2	528.808042	1055.60153	1.1289	0.00059695	0.87663	0.00046357	2.0055	0.0010605	528.8084819356379	144.67	2.9037	144.67	144.06	146.96	0					106	59	4	0	0	0	0.091859	1	16915	16915		99.375	1.9023	1	1313800			32717	11319	26929	26954	36078	36078					0.07595503999755238
LLSVVGRWGP	10	Unmodified	_LLSVVGRWGP_					0	0	0			REV__ENST00000510279.5_1_5:7869282-7870908:+|nuORF	REV__ENST00000510279.5_1_5:7869282-7870908:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.82421875	2	542.319109	1082.62366	1.4469	0.0007847	-0.54138	-0.0002936	0.90555	0.0004911	542.3184128848404	147.58	3.7859	147.58	147.11	150.89	0					95	76	2	0	0	0	0.026697	1	17611	17611		45.952	3.5558	1	463910	+		32718	26937	26930	26955	36079	36079					0.08565728468192901
LLSWSRPE	8	Unmodified	_LLSWSRPE_					0	0	0			REV__ENST00000587429.1_1_19:14544333-14557253:+|nuORF	REV__ENST00000587429.1_1_19:14544333-14557253:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.7859191894531	2	494.266542	986.51853	-0.84204	-0.00041619	0.60096	0.00029704	-0.24108	-0.00011916	494.26514859332343	42.196	0.24459	39.216	39.116	39.361	-2.9804					6	4	2	0	0	0	0.028476	1	1946	1946		63.306	2.3343	1	18384	+		32719	18628	26931	26956	36080	36080					0.024731872717552505
LLSYSTAE	8	Unmodified	_LLSYSTAE_					0	0	0		ENST00000330539.1_1_8:37593400-37593877:-|nuORF	ENST00000330539.1_1_8:37593400-37593877:-|nuORF	ENST00000330539.1_1_8:37593400-37593877:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	442.2396240234375	2	442.224008	882.433463	2.9729	0.0013147	0.86151	0.00038098	3.8344	0.0016957	442.22418378621416	77.673	0.42278	77.673	77.461	77.884	0					13	9	2	0	0	0	0.028476	1	7856	7856		18.324	0	1	192920			32720	10433	26932	26957	36081	36081					-0.012456029847044192
LLSYVFRP	8	Unmodified	_LLSYVFRP_					0	0	0			REV__ENSG00000180432|ENST00000316161|CYP8B1	REV__ENSG00000180432|ENST00000316161|CYP8B1	MULTI-MSMS	OvCa9_classI_Rep2	2	497.7875671386719	2	497.789653	993.564752	-1.6586	-0.00082566	-2.618	-0.0013032	-4.2767	-0.0021289	497.78818191941025	38.201	0.9397	35.491	35.271	36.211	-2.7097					48	18	4	0	0	0	0.67745	1	1765	1765		47.916	1.9434	1	265770	+		32721	22172	26933	26958	36082	36082					0.06771252173848552
LLTAITIFHG	10	Unmodified	_LLTAITIFHG_					0	0	0		OR5D16|p.H246L|1|0.5|ENSG00000205029|chr11:55839488-55839488|A/T|missense_variant	OR5D16|p.H246L|1|0.5|ENSG00000205029|chr11:55839488-55839488|A/T|missense_variant	OR5D16|p.H246L|1|0.5|ENSG00000205029|chr11:55839488-55839488|A/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	543.8156127929688	2	543.321317	1084.62808	-1.3662	-0.0007423	3.607	0.0019598	2.2408	0.0012175	543.3231763520132	121.16	0.44403	120.96	120.61	121.05	-0.19718					13	8	3	0	0	0	0.026956	1	11707	11707		42.396	18.193	1	13691			32722	15462	26934	26959	36083	36083					0.08915192891095103
LLTCVMRA	8	Oxidation (M)	_LLTCVM(Oxidation (M))RA_		LLTCVM(1)RA		LLTCVM(52)RA	0	0	1		nc|ENSG00000138621|Q96CD2-2|PPCDC;ENSG00000138621|ENST00000342932|PPCDC	nc|ENSG00000138621|Q96CD2-2|PPCDC	nc|ENSG00000138621|Q96CD2-2|PPCDC	MULTI-MSMS	OvCa9_classI_Rep4_	4	461.744384765625	2	461.746073	921.477594	-0.9628	-0.00044457	-1.8312	-0.00084555	-2.794	-0.0012901	461.74509928976033	117.12	2.1532	115.76	115.46	117.61	-1.3645					88	40	4	0	0	0	0.65582	1	10946	10946		52.299	6.3472	1	521240			32723	4697	26935	26960	36084	36084		152			0.013713866362877525
LLTDCFPKIL	10	Carbamidomethyl (C)	_LLTDC(Carbamidomethyl (C))FPKIL_	LLTDC(1)FPKIL		LLTDC(58)FPKIL		0	1	0		ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	OvCa99_classI_Rep5	1	407.2320251464844	3	407.23002	1218.66823	0.70396	0.00028668	2.4456	0.00099591	3.1495	0.0012826	407.23100616675237	66.388	0.72141	66.388	66.136	66.857	0					60	17	5	0	0	0	0.47142	1	6169	6169		58.23	10.573	1	10901000			32724	5455	26936	26961	36085	36085	50				0.06764371499343724
LLTDCFPKIL	10	Carbamidomethyl (C)	_LLTDC(Carbamidomethyl (C))FPKIL_					0	1	0		ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MATCH	OvCa9_classI_Rep2	2		3	407.23002	1218.66823	0.5929	0.00024145	2.7951	0.0011383	3.388	0.0013797	407.2311303066792	69.111	1.3465	66.49	66.217	67.563	-2.6203	-0.0080497	0.00020862	NaN	58.23	65	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220310			32725	5455	26936	26961			50				0.06764371499343724
LLTDCFPKIL	10	Carbamidomethyl (C)	_LLTDC(Carbamidomethyl (C))FPKIL_					0	1	0		ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MATCH	OvCa9_classI_Rep3	3		3	407.23002	1218.66823	1.5726	0.0006404	1.919	0.00078148	3.4916	0.0014219	407.2307241984365	69.31	0.89999	66.495	66.261	67.161	-2.8144	-0.0031268	-0.00086172	NaN	58.23	27	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26418			32726	5455	26936	26961			50				0.06764371499343724
LLTDCFPKIL	10	Carbamidomethyl (C)	_LLTDC(Carbamidomethyl (C))FPKIL_					0	1	0		ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	407.23002	1218.66823	0.51915	0.00021141	2.9409	0.0011976	3.4601	0.0014091	407.2311760048764	70.102	1.3094	66.62	66.442	67.751	-3.4812	0.12198	0.00038675	NaN	58.23	57	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280650			32727	5455	26936	26961			50				0.06764371499343724
LLTDLYQATM	10	Unmodified	_LLTDLYQATM_					0	0	0		nc|ENSG00000147813|Q6XQN6-2|NAPRT;ENST00000462059.1_1_8:144660029-144660488:-|nuORF;nc|ENSG00000147813|Q6XQN6-3|NAPRT;ENSG00000147813|ENST00000449291|NAPRT	nc|ENSG00000147813|Q6XQN6-2|NAPRT	nc|ENSG00000147813|Q6XQN6-2|NAPRT	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.323486328125	2	584.799557	1167.58456	1.553	0.00090821	3.1368	0.0018344	4.6899	0.0027426	584.801145495468	113.78	0.4699	113.78	113.5	113.97	0					13	10	2	0	0	0	0.026551	1	12988	12988		42.864	0	1	108010			32728	15080	26937	26962	36086	36086					0.007472153316030017
LLTECLWH	8	Unmodified	_LLTECLWH_					0	0	0		chr11:66539820-66543704|88|10.05|0.29|5.12|-|2|None,ZDHHC24|1	chr11:66539820-66543704|88|10.05|0.29|5.12|-|2|None,ZDHHC24|1	chr11:66539820-66543704|88|10.05|0.29|5.12|-|2|None,ZDHHC24|1	MULTI-MSMS	OvCa99_classI_Rep5	1	507.76025390625	2	507.757495	1013.50044	0.85469	0.00043397	3.6289	0.0018426	4.4836	0.0022766	507.75921835508785	158.03	1.2386	158.03	157.7	158.94	0					46	25	2	0	0	0	0.69415	1	18523	18523		44.531	5.2782	1	92663			32729	301	26938	26963	36087	36087					-0.005772709746111104
LLTELDLF	8	Unmodified	_LLTELDLF_					0	0	0		ENST00000419610.5_1_3:49977551-50091772:+|nuORF	ENST00000419610.5_1_3:49977551-50091772:+|nuORF	ENST00000419610.5_1_3:49977551-50091772:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	482.755126953125	2	482.273501	962.532449	-0.15611	-7.5288E-05	0.79992	0.00038578	0.64381	0.00031049	482.2737206993464	57.837	0.2546	54.492	54.291	54.546	-3.3449					5	4	2	0	0	0	0.028476	1	3765	3765		52.299	22.458	1	5499.9			32730	11653	26939	26964	36088	36088					0.04968419980195904
LLTERCSLK	9	Unmodified	_LLTERCSLK_					0	0	0		ENST00000527620.5_1_11:559022-559837:+|nuORF	ENST00000527620.5_1_11:559022-559837:+|nuORF	ENST00000527620.5_1_11:559022-559837:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8004760742188	2	531.802434	1061.59032	-0.1228	-6.5303E-05	-3.3	-0.001755	-3.4228	-0.0018203	531.800515981788	118.08	1.1889	117.05	116.54	117.73	-1.0324					51	23	4	0	0	0	0.3076	1	8888	8888		62.107	14.192	1	254040			32731	13238	26940	26965	36089	36089					0.06198358633969292
LLTERKLI	8	Unmodified	_LLTERKLI_					0	0	0			REV__ENSG00000121940|ENST00000369969|CLCC1	REV__ENSG00000121940|ENST00000369969|CLCC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.32452392578125	2	493.32386	984.633166	0.2425	0.00011963	-1.1229	-0.00055394	-0.88037	-0.00043431	493.3231302299978	116.17	1.6901	114.8	114.5	116.19	-1.3645					62	32	3	0	0	0	0.60331	1	10845	10845		63.306	2.3343	1	214860	+		32732	18568	26941	26966	36090	36090					0.1402349675371397
LLTESAAHTI	10	Unmodified	_LLTESAAHTI_					0	0	0		tr|A0A553SJV5|A0A553SJV5_NIACISeptationringformationregulatorEzrAOS=NialliacirculansOX=1397GN=ezrAPE=3SV=1	tr|A0A553SJV5|A0A553SJV5_NIACISeptationringformationregulatorEzrAOS=NialliacirculansOX=1397GN=ezrAPE=3SV=1	tr|A0A553SJV5|A0A553SJV5_NIACISeptationringformationregulatorEzrAOS=NialliacirculansOX=1397GN=ezrAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.7894897460938	2	528.290214	1054.56587	-0.33264	-0.00017573	4.1291	0.0021813	3.7964	0.0020056	528.2915878312507	123.4	1.4297	123.17	122.5	123.93	-0.23193					45	28	3	0	0	0	0.026915	1	11929	11929		27.882	9.5578	1	39034			32733	33545	26942	26967	36091	36091					0.040774217520947786
LLTESAAHTI	10	Unmodified	_LLTESAAHTI_					0	0	0		tr|A0A553SJV5|A0A553SJV5_NIACISeptationringformationregulatorEzrAOS=NialliacirculansOX=1397GN=ezrAPE=3SV=1	tr|A0A553SJV5|A0A553SJV5_NIACISeptationringformationregulatorEzrAOS=NialliacirculansOX=1397GN=ezrAPE=3SV=1	tr|A0A553SJV5|A0A553SJV5_NIACISeptationringformationregulatorEzrAOS=NialliacirculansOX=1397GN=ezrAPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	528.290214	1054.56587	1.1126	0.00058776	2.6549	0.0014025	3.7674	0.0019903	528.2912656084045	124.23	1.2482	123.19	122.82	124.07	-1.0377	0.029827	-0.0011764	NaN	35.618	40	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54395			32734	33545	26942	26967							0.040774217520947786
LLTFAQLLRTL	11	Unmodified	_LLTFAQLLRTL_					0	0	0			REV__nc|ENSG00000231852|P08686-2|CYP21A2	REV__nc|ENSG00000231852|P08686-2|CYP21A2	MULTI-SECPEP	OvCa99_classI_Rep5	1	644.8687133789062	2	644.903005	1287.79146	1.3006	0.00083879	-3.819	-0.0024629	-2.5183	-0.0016241	644.8994736407029	124.44	0.27729	124.44	124.33	124.61	0					8	5	2	0	0	0	0.025909	1	14365	14365		26.693	0	1	69258	+		32735	23389	26943	26968	36092	36092					0.1590737094211363
LLTFIYFILL	10	Unmodified	_LLTFIYFILL_					0	0	0			REV__nc|ENSG00000182477|P59922|OR2B8P	REV__nc|ENSG00000182477|P59922|OR2B8P	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.54962158203125	3	419.261538	1254.76278	0.30779	0.00012905	2.4102	0.0010105	2.718	0.0011396	419.26288791138256	56.678	0.54474	56.678	56.459	57.004	0					16	12	2	0	0	0	0.026867	1	4705	4705		28.081	10.248	1	118190	+		32736	29040	26944	26969	36093	36093					0.14559253313018417
LLTGHILIL	9	Unmodified	_LLTGHILIL_					0	0	0		ENSG00000187688|ENST00000338560|TRPV2;TRPV2|p.E582Gfs*74|1|0.57|ENSG00000187688|chr17:16432052-16432053|-/A|frameshift_variant;ENST00000441875.1_1_17:16330801-16331912:+|nuORF	ENSG00000187688|ENST00000338560|TRPV2	ENSG00000187688|ENST00000338560|TRPV2	MULTI-MSMS	OvCa99_classI_Rep5	1	496.8293151855469	2	496.828778	991.643003	1.4547	0.00072276	-0.073364	-3.6449E-05	1.3814	0.00068631	496.82868474743657	148.53	2.5161	148.53	148.18	150.69	0					110	50	4	0	0	0	0.25214	1	17431	17431		68.485	5.5063	1	2754700			32737	8424	26945	26970	36094	36094					0.14684684759106403
LLTGRLPA	8	Unmodified	_LLTGRLPA_					0	0	0			REV__nc|ENSG00000131233|P57773-2|GJA9	REV__nc|ENSG00000131233|P57773-2|GJA9	MULTI-MSMS	OvCa99_classI_Rep5	1	420.7702331542969	2	420.76872	839.522887	2.7872	0.0011728	-0.3128	-0.00013162	2.4744	0.0010412	420.76864063208365	94.669	0.89731	94.669	94.306	95.204	0					53	20	4	0	0	0	0.66704	1	10326	10326		50.025	2.1089	1	1278700	+		32738	19004	26946	26971	36095	36095					0.09670696485318331
LLTGRLPA	8	Unmodified	_LLTGRLPA_					0	0	0			REV__nc|ENSG00000131233|P57773-2|GJA9	REV__nc|ENSG00000131233|P57773-2|GJA9	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	420.76872	839.522887	2.7872	0.0011728	-0.3128	-0.00013162	2.4744	0.0010412	420.76864063208365	94.669	0.89731	94.669	94.306	95.204	0	0.12324	4.6294E-06	NaN	50.025	53	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1278700	+		32739	19004	26946	26971							0.09670696485318331
LLTGRLPA	8	Unmodified	_LLTGRLPA_					0	0	0			REV__nc|ENSG00000131233|P57773-2|GJA9	REV__nc|ENSG00000131233|P57773-2|GJA9	MULTI-MATCH	OvCa9_classI_Rep2	2		2	420.76872	839.522887	0.13629	5.7346E-05	-0.20274	-8.5307E-05	-0.066452	-2.7961E-05	420.76846761915704	95.53	0.59446	94.502	94.169	94.764	-1.0281	-0.044218	9.7252E-05	NaN	50.025	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18075	+		32740	19004	26946	26971							0.09670696485318331
LLTGRLPA	8	Unmodified	_LLTGRLPA_					0	0	0			REV__nc|ENSG00000131233|P57773-2|GJA9	REV__nc|ENSG00000131233|P57773-2|GJA9	MULTI-MATCH	OvCa9_classI_Rep3	3		2	420.76872	839.522887	-0.16483	-6.9356E-05	0.13573	5.7112E-05	-0.029098	-1.2244E-05	420.76871401181756	96.35	1.074	94.521	94.271	95.345	-1.8286	-0.024732	0.00038209	NaN	50.025	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38776	+		32741	19004	26946	26971							0.09670696485318331
LLTGRLPA	8	Unmodified	_LLTGRLPA_					0	0	0			REV__nc|ENSG00000131233|P57773-2|GJA9	REV__nc|ENSG00000131233|P57773-2|GJA9	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	420.76872	839.522887	0.70594	0.00029704	-0.98357	-0.00041386	-0.27763	-0.00011682	420.76830725426123	96.917	0.59279	94.492	94.322	94.915	-2.4256	-0.054289	-0.00055984	NaN	50.025	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33702	+		32742	19004	26946	26971							0.09670696485318331
LLTGYLQAKTL	11	Unmodified	_LLTGYLQAKTL_					0	0	0			REV__nc|ENSG00000183092|Q9BUH8|BEGAIN	REV__nc|ENSG00000183092|Q9BUH8|BEGAIN	MULTI-MSMS	OvCa9_classI_Rep2	2	407.57940673828125	3	407.579818	1219.71762	0.61537	0.00025081	-2.9691	-0.0012102	-2.3538	-0.00095934	407.5786357790963	57.72	2.7424	54.928	54.526	57.269	-2.792					151	53	5	0	0	0	0.68059	1	4119	4119		36.318	1.1394	1	1780300	+		32743	22342	26947	26972	36096	36096					0.11655402779797441
LLTHFTVDN	9	Unmodified	_LLTHFTVDN_					0	0	0			REV__tr|A0A553SIF0|A0A553SIF0_NIACINa+/H+antiporterOS=NialliacirculansOX=1397GN=CEQ21_14735PE=3SV=1	REV__tr|A0A553SIF0|A0A553SIF0_NIACINa+/H+antiporterOS=NialliacirculansOX=1397GN=CEQ21_14735PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2620239257812	2	530.277106	1058.53966	2.4007	0.001273	-1.0312	-0.00054682	1.3695	0.00072619	530.7769910316754	91.603	0.1656	91.603	91.459	91.625	0					6	3	2	0	0	0	0.027462	1	9858	9858		29.15	8.2026	1	80340	+		32744	29886	26948	26973	36097	36097					0.012731525806202626
LLTHIQAVAN	10	Unmodified	_LLTHIQAVAN_					0	0	0		nc|ENSG00000198026|Q9H4Z2-2|ZNF335;ENSG00000198026|ENST00000322927|ZNF335	nc|ENSG00000198026|Q9H4Z2-2|ZNF335	nc|ENSG00000198026|Q9H4Z2-2|ZNF335	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.8019409179688	2	540.314023	1078.61349	1.9631	0.0010607	3.2226	0.0017412	5.1857	0.0028019	540.3155860935507	117.69	0.56618	117.69	117.18	117.74	0					30	11	3	0	0	0	0.026606	1	13448	13448		36.447	0	1	388530			32745	8773	26949	26974	36098	36098					0.07733120742932442
LLTHLKKK	8	Unmodified	_LLTHLKKK_					0	0	0		ENST00000381626.6_1_7:33054112-33054307:-|nuORF	ENST00000381626.6_1_7:33054112-33054307:-|nuORF	ENST00000381626.6_1_7:33054112-33054307:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	490.7367248535156	2	490.834394	979.654236	0.4316	0.00021184	-0.98947	-0.00048567	-0.55788	-0.00027382	490.83400852255386	78.243	0.70688	76.503	76.196	76.903	-1.7398					19	13	2	0	0	0	0.028476	1	6511	6511		31.955	1.4512	1	18324			32746	11169	26950	26975	36099	36099					0.16359506853223138
LLTHLKKK	8	Unmodified	_LLTHLKKK_					0	0	0		ENST00000381626.6_1_7:33054112-33054307:-|nuORF	ENST00000381626.6_1_7:33054112-33054307:-|nuORF	ENST00000381626.6_1_7:33054112-33054307:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	490.834394	979.654236	-0.35981	-0.00017661	0.38163	0.00018732	0.021818	1.0709E-05	490.8345072187613	79.108	1.1476	76.768	76.213	77.36	-2.3399	0.061903	0.00039346	NaN	31.955	34	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20727			32747	11169	26950	26975							0.16359506853223138
LLTHLKKK	8	Unmodified	_LLTHLKKK_					0	0	0		ENST00000381626.6_1_7:33054112-33054307:-|nuORF	ENST00000381626.6_1_7:33054112-33054307:-|nuORF	ENST00000381626.6_1_7:33054112-33054307:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	490.834394	979.654236	-0.10104	-4.9593E-05	-0.028779	-1.4126E-05	-0.12982	-6.3718E-05	490.83422343712556	79.599	0.76176	76.847	76.466	77.228	-2.7514	0.14101	-9.4212E-06	NaN	31.955	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20184			32748	11169	26950	26975							0.16359506853223138
LLTHLPPPN	9	Unmodified	_LLTHLPPPN_					0	0	0			REV__ENST00000360156.11_1_X:118827247-118827316:-|nuORF	REV__ENST00000360156.11_1_X:118827247-118827316:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	501.29010009765625	2	501.292559	1000.57057	-1.4695	-0.00073667	-2.6975	-0.0013522	-4.167	-0.0020889	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.6653	1	11172	11172		24.203	3.2558	1	97838	+		32749	24823	26951	26976	36100	36100					0.07030350685511166
LLTHLRVAV	9	Unmodified	_LLTHLRVAV_					0	0	0			REV__ENST00000428008.5_1_20:47895203-47895257:+|nuORF	REV__ENST00000428008.5_1_20:47895203-47895257:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.28875732421875	2	511.329476	1020.6444	2.2838	0.0011678	3.1732	0.0016226	5.457	0.0027903	511.3309033200699	116.42	0.5863	116.42	116.14	116.73	0					15	12	2	0	0	0	0.027462	1	13328	13328		35.618	8.8222	1	68178	+		32750	25687	26952	26977	36101	36101					0.13490318847846083
LLTIALHGKLE	11	Unmodified	_LLTIALHGKLE_					0	0	0		nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MULTI-MSMS	OvCa9_classI_Rep4_	4	604.3666381835938	2	604.374081	1206.73361	-5.8117	-0.0035124	-4.0906	-0.0024722	-9.9023	-0.0059847	604.3713445150207	164.16	0.31915	162.53	162.36	162.68	-1.6369					21	8	4	0	0	0	0.69808	1	16220	16220		30.318	2.2362	1	412220			32751	825	26953	26978	36102	36102					0.1385110901671851
LLTIALHGKLE	11	Unmodified	_LLTIALHGKLE_					0	0	0		nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	604.374081	1206.73361	0.57407	0.00034695	-12.088	-0.0073055	-11.514	-0.0069586	604.3667377613183	162.55	0.3019	162.55	162.33	162.63	0	-0.011522	-0.0053764	NaN	30.318	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297360			32752	825	26953	26978							0.1385110901671851
LLTIALHGKLE	11	Unmodified	_LLTIALHGKLE_					0	0	0		nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	604.374081	1206.73361	-4.9804	-0.00301	-5.9207	-0.0035783	-10.901	-0.0065884	604.3703796830155	164	0.40314	162.6	162.34	162.74	-1.3926	0.04537	0.002078	NaN	30.318	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	631580			32753	825	26953	26978							0.1385110901671851
LLTICSLEGAL	11	Unmodified	_LLTICSLEGAL_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MSMS	OvCa9_classI_Rep2	2	566.8157958984375	2	566.81775	1131.62095	-0.034625	-1.9626E-05	-3.3718	-0.0019112	-3.4064	-0.0019308	566.8158254764281	108.92	2.4235	108.69	108.32	110.75	-0.22498					109	48	5	0	0	0	0.22384	2	10215	10215;10241		76.774	12.567	1	1117900			32754	5979	26954	26979	36103;36104	36103					0.06040092228363392
LLTICSLEGAL	11	Unmodified	_LLTICSLEGAL_					0	0	0		ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	ENSG00000158874|ENST00000367990|APOA2	MULTI-MSMS	OvCa9_classI_Rep3	3	566.8154907226562	2	566.81775	1131.62095	-0.24812	-0.00014064	-3.2438	-0.0018386	-3.4919	-0.0019793	566.8159504694337	109.72	2.4602	108.58	108.24	110.71	-1.1444					116	47	3	0	0	0	0.2426	2	7888	7888;7926		74.255	17.534	1	1478800			32755	5979	26954	26979	36105;36106	36105					0.06040092228363392
LLTIIFKWLER	11	Unmodified	_LLTIIFKWLER_					0	0	0		tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	tr|A0A553SSW2|A0A553SSW2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03800PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.95758056640625	3	477.962262	1430.86496	-5.9329	-0.0028357	-0.32165	-0.00015374	-6.2545	-0.0029894	478.2967649500702	159.34	2.8374	157.75	156.72	159.56	-1.5858					174	71	3	0	0	0	0.72528	1	15675	15675		11.932	1.8285	1	81225			32756	34426	26955	26980	36107	36107					0.16675919384601912
LLTIVDTPGFG	11	Unmodified	_LLTIVDTPGFG_					0	0	0		ENSG00000122545|ENST00000350320|SEPTIN7;nc|ENSG00000122545|Q16181-2|SEPTIN7;ENST00000425198.1_1_7:35872473-35938044:+|nuORF;ENST00000420492.2_1_9:101369387-101369513:+|nuORF;ENST00000398921.6_1_7:45788229-45798731:-|nuORF;ENST00000475109.5_1_7:35903172-35919218:+|nuORF;ENST00000473201.1_1_7:35903172-35913395:+|nuORF;ENST00000429741.5_1_7:45796578-45798731:-|nuORF;ENST00000428867.1_1_7:45797631-45798728:-|nuORF	ENSG00000122545|ENST00000350320|SEPTIN7	ENSG00000122545|ENST00000350320|SEPTIN7	MULTI-MSMS	OvCa9_classI_Rep2	2	566.8157958984375	2	566.816064	1131.61758	-0.034625	-1.9626E-05	-0.39831	-0.00022577	-0.43294	-0.0002454	566.8158254764281	108.92	2.4235	108.69	108.32	110.75	-0.22498					109	48	5	0	0	0	0.56722	1	10246	10246		47.657	3.2801	1	1117900			32757	3539	26956	26981	36108	36108					0.057031654459933634
LLTKAVVKLEL	11	Unmodified	_LLTKAVVKLEL_					0	0	0			REV__nc|ENSG00000189212|Q6NXN4|DPY19L2P1	REV__nc|ENSG00000189212|Q6NXN4|DPY19L2P1	MULTI-MSMS	OvCa9_classI_Rep3	3	409.6072692871094	3	409.607596	1225.80096	1.1396	0.00046679	-0.24169	-9.9E-05	0.89792	0.00036779	409.6074659919173	107.95	5.8573	106.76	106.27	112.13	-1.1978					409	114	4	0	0	0	0.52474	1	7673	7673		51.528	1.9917	1	1037400	+		32758	29070	26957	26982	36109	36109					0.19709139227688866
LLTKLIVEL	9	Unmodified	_LLTKLIVEL_					0	0	0			REV__ENSG00000104321|ENST00000262209|TRPA1	REV__ENSG00000104321|ENST00000262209|TRPA1	MULTI-MSMS	OvCa99_classI_Rep5	1	521.3510131835938	2	521.349543	1040.68453	0.53499	0.00027891	1.7133	0.00089324	2.2483	0.0011722	521.3504539526556	142.81	0.48344	142.81	142.59	143.07	0					15	9	2	0	0	0	0.44568	1	16682	16682		47.657	5.2612	1	33774	+		32759	17657	26958	26983	36110	36110					0.16581820727765262
LLTKNHGLK	9	Unmodified	_LLTKNHGLK_					0	0	0		ENST00000380121.7_1_13:33010521-33020605:-|nuORF;nc|ENSG00000244754|Q92802-3|N4BP2L2	ENST00000380121.7_1_13:33010521-33020605:-|nuORF	ENST00000380121.7_1_13:33010521-33020605:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.3199462890625	2	512.319109	1022.62366	0.25892	0.00013265	-0.88967	-0.00045579	-0.63074	-0.00032314	512.3184567361126	89.39	1.3966	86.787	86.532	87.928	-2.6027					52	27	3	0	0	0	0.24951	1	7672	7672		68.787	7.8149	1	404570			32760	11142	26959	26984	36111	36111					0.11325728468193574
LLTKQLYN	8	Unmodified	_LLTKQLYN_					0	0	0		tr|A0A553ST83|A0A553ST83_NIACI2-dehydropantoate2-reductaseOS=NialliacirculansOX=1397GN=CEQ21_04560PE=3SV=1	tr|A0A553ST83|A0A553ST83_NIACI2-dehydropantoate2-reductaseOS=NialliacirculansOX=1397GN=CEQ21_04560PE=3SV=1	tr|A0A553ST83|A0A553ST83_NIACI2-dehydropantoate2-reductaseOS=NialliacirculansOX=1397GN=CEQ21_04560PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.7927551269531	2	496.792392	991.570232	-1.5717	-0.00078079	1.0825	0.00053777	-0.48917	-0.00024302	496.7927828421501	119.1	0.98576	117.75	117.31	118.3	-1.3444					36	18	3	0	0	0	0.48084	1	11182	11182		79.451	8.1553	1	86187			32761	34469	26960	26985	36112	36112					0.07410930965670559
LLTKQLYN	8	Unmodified	_LLTKQLYN_					0	0	0		tr|A0A553ST83|A0A553ST83_NIACI2-dehydropantoate2-reductaseOS=NialliacirculansOX=1397GN=CEQ21_04560PE=3SV=1	tr|A0A553ST83|A0A553ST83_NIACI2-dehydropantoate2-reductaseOS=NialliacirculansOX=1397GN=CEQ21_04560PE=3SV=1	tr|A0A553ST83|A0A553ST83_NIACI2-dehydropantoate2-reductaseOS=NialliacirculansOX=1397GN=CEQ21_04560PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	496.792392	991.570232	-1.3105	-0.00065105	0.66231	0.00032903	-0.6482	-0.00032202	496.7925493869132	118.06	0.84459	117.91	117.64	118.48	-0.14755	0.079921	-0.00013929	NaN	79.451	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79678			32762	34469	26960	26985							0.07410930965670559
LLTLAPSP	8	Unmodified	_LLTLAPSP_					0	0	0			REV__ENSG00000179588|ENST00000319555|ZFPM1	REV__ENSG00000179588|ENST00000319555|ZFPM1	MULTI-MSMS	OvCa9_classI_Rep2	2	406.24853515625	2	406.249829	810.485105	0.12737	5.1745E-05	-3.126	-0.00127	-2.9987	-0.0012182	406.2484453732125	140.19	2.0181	139.96	139.4	141.42	-0.22697					109	40	4	0	0	0	0.75661	1	14097	14097		19.36	1.0356	1	304300	+		32763	22130	26961	26986	36113	36113					0.07228185499855044
LLTLFSGT	8	Unmodified	_LLTLFSGT_					0	0	0			REV__ENST00000443617.6_1_15:63908840-63915047:-|nuORF	REV__ENST00000443617.6_1_15:63908840-63915047:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	426.2455749511719	2	426.247286	850.48002	-0.93249	-0.00039747	-2.0488	-0.0008733	-2.9813	-0.0012708	426.2463036759244	138.33	1.7168	138.1	137.59	139.3	-0.22696					83	34	3	0	0	0	0.74971	1	13817	13817		26.796	0	1	161940	+		32764	25871	26962	26987	36114	36114					0.04879881637236849
LLTLGKCIN	9	Unmodified	_LLTLGKCIN_					0	0	0		nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-4|KIF20B;KIF20B|p.N883Ifs*5|1|0.26|ENSG00000138182|chr10:89737489-89737511|ATAATGAAGGACTGAGAGCATTT/-|frameshift_variant;KIF20B|p.S506*|1|0.08|ENSG00000138182|chr10:89719500-89719501|AG/-|frameshift_variant	nc|ENSG00000138182|Q96Q89-3|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	MULTI-MSMS	OvCa9_classI_Rep2	2	487.791015625	2	487.788795	973.563038	0.65009	0.00031711	2.0871	0.0010181	2.7372	0.0013352	487.7895651141493	131.92	5.1663	131.7	130.26	135.42	-0.22697					227	104	3	0	0	0	0.69123	1	13261	13261		20.947	1.8434	1	77366			32765	4667	26963	26988	36115	36115					0.07519875093578321
LLTLGLNYVV	10	Unmodified	_LLTLGLNYVV_					0	0	0			REV__ENST00000485336.5_1_6:53155264-53213696:-|nuORF	REV__ENST00000485336.5_1_6:53155264-53213696:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	553.80126953125	2	552.8368	1103.65905	0.43953	0.00024299	-3.0209	-0.0016701	-2.5814	-0.0014271	552.8352656841834	59.224	0.42094	56.444	56.241	56.662	-2.7801					12	7	2	0	0	0	0.026915	1	4331	4331		35.618	8.9254	1	11703	+		32766	16497	26964	26989	36116	36116					0.11136346205330483
LLTLHITVL	9	Unmodified	_LLTLHITVL_					0	0	0		ENSG00000101230|ENST00000262487|ISM1	ENSG00000101230|ENST00000262487|ISM1	ENSG00000101230|ENST00000262487|ISM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.8174743652344	2	511.83406	1021.65357	1.2203	0.00062459	-1.8759	-0.00096016	-0.65561	-0.00033557	511.8330718087954	145.6	0.24588	145.6	145.43	145.68	0					5	4	2	0	0	0	0.027462	1	17017	17017		18.324	4.5491	1	21651			32767	2157	26965	26990	36117	36117					0.14360667413507144
LLTLIHTLE	9	Unmodified	_LLTLIHTLE_					0	0	0		ENSG00000198753|ENST00000361971|PLXNB3;nc|ENSG00000198753|Q9ULL4-2|PLXNB3	ENSG00000198753|ENST00000361971|PLXNB3	ENSG00000198753|ENST00000361971|PLXNB3	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.8203125	2	526.82115	1051.62775	-0.62771	-0.00033069	-2.5996	-0.0013695	-3.2273	-0.0017002	526.8197008542012	64.039	1.4071	60.564	60.298	61.705	-3.475					73	28	4	0	0	0	0.53957	1	4534	4534		38.806	3.6054	1	804140			32768	8866	26966	26991	36118	36118					0.10399773171229754
LLTLKAAHSMD	11	Unmodified	_LLTLKAAHSMD_					0	0	0		nc|ENSG00000240303|Q709F0-3|ACAD11;nc|ENSG00000240303|Q709F0-2|ACAD11;ENSG00000240303|ENST00000264990|ACAD11;ENST00000496418.5_1_3:132277817-132297733:-|nuORF	nc|ENSG00000240303|Q709F0-3|ACAD11	nc|ENSG00000240303|Q709F0-3|ACAD11	MULTI-MSMS	OvCa9_classI_Rep3	3	600.322509765625	2	600.326273	1198.63799	-2.9074	-0.0017454	-1.6518	-0.00099162	-4.5592	-0.002737	600.3251735089444	151.69	1.358	150.74	150.35	151.71	-0.95645					71	26	4	0	0	0	0.68021	1	12915	12915		36.447	3.6343	1	229880			32769	9337	26967	26992	36119	36119					0.04662012834160123
LLTLKKWF	8	Unmodified	_LLTLKKWF_					0	0	0			REV__ENSG00000183340|ENST00000332349|JRKL	REV__ENSG00000183340|ENST00000332349|JRKL	MULTI-MSMS	OvCa9_classI_Rep3	3	524.8268432617188	2	524.83132	1047.64809	-6.4209	-0.0033699	-1.5632	-0.00082041	-7.9841	-0.0041903	524.8303693371411	156.49	1.5557	155.32	154.95	156.51	-1.1687					100	33	5	0	0	0	0.73626	2	13491	13480;13491		33.516	8.9964	1	1025700	+		32770	22357	26968	26993	36120;36121	36121					0.1261698862169851
LLTLLVGLWM	10	Unmodified	_LLTLLVGLWM_					0	0	0			REV__nc|ENSG00000261371|P16284-5|PECAM1	REV__nc|ENSG00000261371|P16284-5|PECAM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.8170776367188	2	579.851396	1157.68824	-1.3407	-0.00077739	1.6364	0.00094885	0.2957	0.00017146	579.8518221344865	27.834	0.29983	27.834	27.691	27.991	0					7	5	2	0	0	0	0.027084	1	840	840		31.955	0.42505	1	11243	+		32771	23567	26969	26994	36122	36122					0.11570167229956496
LLTLPPTT	8	Unmodified	_LLTLPPTT_					0	0	0		ENST00000554467.5_1_12:57625133-57626138:+|nuORF	ENST00000554467.5_1_12:57625133-57626138:+|nuORF	ENST00000554467.5_1_12:57625133-57626138:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	428.26129150390625	2	428.262936	854.51132	-2.1797	-0.00093349	-0.96416	-0.00041291	-3.1439	-0.0013464	428.2624599299376	144.02	1.6837	143.79	143.2	144.88	-0.22697					114	33	5	0	0	0	0.74595	3	14517	14457;14499;14517		28.254	0	1	330270			32772	13635	26970	26995	36123;36124;36125	36125					0.07824454671310832
LLTLPPTT	8	Unmodified	_LLTLPPTT_					0	0	0		ENST00000554467.5_1_12:57625133-57626138:+|nuORF	ENST00000554467.5_1_12:57625133-57626138:+|nuORF	ENST00000554467.5_1_12:57625133-57626138:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	428.26153564453125	2	428.262936	854.51132	-2.5111	-0.0010754	-0.44999	-0.00019271	-2.9611	-0.0012681	428.26264584865925	144.43	1.5889	143.46	143.1	144.69	-0.97301					79	31	4	0	0	0	0.74971	1	12078	12078		26.796	3.7536	1	839380			32773	13635	26970	26995	36126	36126					0.07824454671310832
LLTLPPTT	8	Unmodified	_LLTLPPTT_					0	0	0		ENST00000554467.5_1_12:57625133-57626138:+|nuORF	ENST00000554467.5_1_12:57625133-57626138:+|nuORF	ENST00000554467.5_1_12:57625133-57626138:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	428.2615966796875	2	428.262936	854.51132	-0.2241	-9.5974E-05	-2.8688	-0.0012286	-3.0929	-0.0013246	428.2616025856162	144.91	1.2947	143.47	143.1	144.39	-1.4357					70	24	4	0	0	0	0.74971	1	14200	14200		26.796	0	1	398580			32774	13635	26970	26995	36127	36127					0.07824454671310832
LLTLRESL	8	Unmodified	_LLTLRESL_					0	0	0			REV__ENSG00000178904|ENST00000392250|DPY19L3	REV__ENSG00000178904|ENST00000392250|DPY19L3	MULTI-SECPEP	OvCa9_classI_Rep2	2	473.2850646972656	2	472.792392	943.570232	1.4886	0.0007038	-3.0659	-0.0014495	-1.5773	-0.00074574	472.7907765545281	87.708	0.83429	86.276	86.04	86.874	-1.4311					23	16	3	0	0	0	0.028476	1	7705	7705		17.365	0	1	78230	+		32775	22086	26971	26996	36128	36128					0.0961893096566655
LLTLRPGVSLT	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LLTLRPGVSLT_					1	0	0		ENST00000573120.5_1_16:4476059-4487492:+|nuORF;ENST00000572974.1_1_16:4475882-4481706:+|nuORF;nc|ENSG00000103423|Q96EY1-2|DNAJA3;ENSG00000103423|ENST00000262375|DNAJA3	ENST00000573120.5_1_16:4476059-4487492:+|nuORF	ENST00000573120.5_1_16:4476059-4487492:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3699951171875	2	606.371538	1210.72852	-0.26856	-0.00016285	-2.8049	-0.0017008	-3.0734	-0.0018636	606.369699493104	145.24	3.8933	143.8	141.64	145.53	-1.4357					226	74	4	0	0	0	0.60323	1	14248	14248		44.377	24.38	1	336140			32776	2316	26972	26997	36129	36129					0.13158805154080255
LLTLRPGVSLT	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LLTLRPGVSLT_					1	0	0		ENST00000573120.5_1_16:4476059-4487492:+|nuORF;ENST00000572974.1_1_16:4475882-4481706:+|nuORF;nc|ENSG00000103423|Q96EY1-2|DNAJA3;ENSG00000103423|ENST00000262375|DNAJA3	ENST00000573120.5_1_16:4476059-4487492:+|nuORF	ENST00000573120.5_1_16:4476059-4487492:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	606.371538	1210.72852	-1.4868	-0.00090157	-1.7146	-0.0010397	-3.2014	-0.0019413	606.3703675071068	144.85	3.0267	143.88	142.65	145.68	-0.97301	0.037653	0.00085223	NaN	44.377	159	60	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61757			32777	2316	26972	26997							0.13158805154080255
LLTLTSGPTVL	11	Unmodified	_LLTLTSGPTVL_					0	0	0			REV__ENSG00000118707|ENST00000373872|TGIF2	REV__ENSG00000118707|ENST00000373872|TGIF2	MULTI-SECPEP	OvCa9_classI_Rep2	2	558.3002319335938	2	557.839539	1113.66453	0.6719	0.00037481	-1.1075	-0.00061782	-0.43561	-0.000243	557.8385133069038	108.71	1.3856	108.49	108.27	109.66	-0.22498					64	27	3	0	0	0	0.025298	1	10285	10285		47.657	8.4045	1	173420	+		32778	18413	26973	26998	36130	36130					0.11224024997136439
LLTLTSGPTVL	11	Unmodified	_LLTLTSGPTVL_					0	0	0			REV__ENSG00000118707|ENST00000373872|TGIF2	REV__ENSG00000118707|ENST00000373872|TGIF2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	557.839539	1113.66453	-0.54906	-0.00030629	0.10233	5.7083E-05	-0.44673	-0.0002492	557.8391507555353	109.56	1.2599	108.41	108.19	109.45	-1.1444	-0.032483	0.001484	NaN	47.657	65	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228230	+		32779	18413	26973	26998							0.11224024997136439
LLTLVYLGK	9	Unmodified	_LLTLVYLGK_					0	0	0		ENST00000263150.8_1_10:1142124-1149563:+|nuORF	ENST00000263150.8_1_10:1142124-1149563:+|nuORF	ENST00000263150.8_1_10:1142124-1149563:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	509.8058776855469	2	510.328611	1018.64267	0.285	0.00014544	0.97452	0.00049732	1.2595	0.00064276	510.83119863741905	71.404	1.3886	68.802	68.331	69.72	-2.6023					79	27	4	0	0	0	0.027462	1	3309	3309		23.042	0	1	222020			32780	9907	26974	26999	36131	36131					0.13409265039229012
LLTMAALVR	9	Unmodified	_LLTMAALVR_					0	0	0			REV__ENSG00000188051|ENST00000341130|TMEM221	REV__ENSG00000188051|ENST00000341130|TMEM221	MULTI-MSMS	OvCa9_classI_Rep2	2	494.3003845214844	2	494.304613	986.594672	-3.5513	-0.0017554	-3.9707	-0.0019627	-7.522	-0.0037182	494.3024982316327	153.87	1.3713	153.64	153.28	154.65	-0.22696					70	29	4	0	0	0	0.6653	1	15676	15676		24.203	3.7209	1	375650	+		32781	22686	26975	27000	36132	36132					0.10083867847538386
LLTNKKPV	8	Unmodified	_LLTNKKPV_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;DNAH1|p.E2311Rfs*58|1|0.32|ENSG00000114841|chr3:52372997-52372998|-/A|frameshift_variant;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;CACNA1D-DNAH1|1|fusion	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-MSMS	OvCa9_classI_Rep2	2	456.79742431640625	2	456.797478	911.580402	0.29232	0.00013353	-0.61394	-0.00028045	-0.32162	-0.00014691	456.7971214119819	103.69	3.5724	103.12	102.73	106.3	-0.57639					168	71	3	0	0	0	0.42208	1	9580	9580		85.359	3.0545	1	1420000			32782	3045	26976	27001	36133	36133					0.1210753869089558
LLTNWKGPD	9	Unmodified	_LLTNWKGPD_					0	0	0		PLEKHG1|p.R975Sfs*13|1|0.31|ENSG00000120278|chr6:150832032-150832053|GCAGGGTGTTTATGATGGCTCG/-|frameshift_variant;ENSG00000120278|ENST00000696526|PLEKHG1	PLEKHG1|p.R975Sfs*13|1|0.31|ENSG00000120278|chr6:150832032-150832053|GCAGGGTGTTTATGATGGCTCG/-|frameshift_variant	PLEKHG1|p.R975Sfs*13|1|0.31|ENSG00000120278|chr6:150832032-150832053|GCAGGGTGTTTATGATGGCTCG/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.8417358398438	2	522.279649	1042.54475	1.3419	0.00070084	-3.5799	-0.0018697	-2.238	-0.0011689	522.2780755591357	77.946	0.45727	77.946	77.757	78.214	0					13	10	2	0	0	0	0.027462	1	7898	7898		21.96	4.5949	1	261520			32783	3426	26977	27002	36134	36134					0.025174564432290936
LLTPRHLNQ	9	Unmodified	_LLTPRHLNQ_					0	0	0		nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1;ENST00000556045.5_1_14:95570385-95572406:-|nuORF	nc|ENSG00000100697|Q9UPY3-2|DICER1	nc|ENSG00000100697|Q9UPY3-2|DICER1	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.3206787109375	2	546.31964	1090.62473	0.036943	2.0182E-05	2.4751	0.0013522	2.5121	0.0013724	546.3204746576425	141.32	3.3559	139.86	139.56	142.91	-1.4627					97	64	3	0	0	0	0.31747	1	13824	13824		60.972	9.6365	1	132850			32784	2098	26978	27003	36135	36135					0.08303942837073919
LLTQGNKAEP	10	Unmodified	_LLTQGNKAEP_					0	0	0			REV__tr|A0A553SNN7|A0A553SNN7_NIACISulfotransferaseOS=NialliacirculansOX=1397GN=CEQ21_24845PE=4SV=1	REV__tr|A0A553SNN7|A0A553SNN7_NIACISulfotransferaseOS=NialliacirculansOX=1397GN=CEQ21_24845PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	535.7981567382812	2	535.795663	1069.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.2	1	100.2	99.701	100.7	0								0	0	0	0.092963	1	11101	11101		72.879	4.0924	1		+		32785	30435	26979	27004	36136	36136					0.04476824126390966
LLTQPEEAAG	10	Unmodified	_LLTQPEEAAG_					0	0	0			REV__ENST00000548159.5_2_12:70637993-70671955:+|nuORF	REV__ENST00000548159.5_2_12:70637993-70671955:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.7674560546875	2	514.766571	1027.51859	0.1138	5.8581E-05	-0.40747	-0.00020975	-0.29366	-0.00015117	514.7661933621142	59.816	1.5823	56.421	56.097	57.68	-3.3949					49	31	3	0	0	0	0.48198	1	4015	4015		56.721	1.9447	1	924170	+		32786	27437	26980	27005	36137	36137					0.005931424811024044
LLTQVWAPLAG	11	Unmodified	_LLTQVWAPLAG_					0	0	0			REV__ENST00000454309.6_1_3:192126033-192126612:-|nuORF	REV__ENST00000454309.6_1_3:192126033-192126612:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	584.78125	2	584.839874	1167.66519	-1.6667	-0.00097473	-2.5824	-0.0015103	-4.249	-0.002485	584.838419308543	85.3	2.624	83.81	83.456	86.08	-1.4906					122	51	5	0	0	0	0.02567	1	7363	7363		71.877	9.7701	1	485480	+		32787	25999	26981	27006	36138	36138					0.08806864436837714
LLTRDTILL	9	Unmodified	_LLTRDTILL_					0	0	0		tr|A0A553SLX9|A0A553SLX9_NIACIPTSfructosetransportersubunitIIAOS=NialliacirculansOX=1397GN=CEQ21_21510PE=4SV=1	tr|A0A553SLX9|A0A553SLX9_NIACIPTSfructosetransportersubunitIIAOS=NialliacirculansOX=1397GN=CEQ21_21510PE=4SV=1	tr|A0A553SLX9|A0A553SLX9_NIACIPTSfructosetransportersubunitIIAOS=NialliacirculansOX=1397GN=CEQ21_21510PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.333984375	2	529.334424	1056.6543	-1.0627	-0.00056254	0.69211	0.00036636	-0.37063	-0.00019619	529.3346373685346	123.64	1.5102	122.27	121.95	123.46	-1.3666					51	29	4	0	0	0	0.42676	1	11697	11697		49.442	0	1	128680			32788	33774	26982	27007	36139	36139					0.12823462062578983
LLTRMCQIN	9	Unmodified	_LLTRMCQIN_					0	0	0			REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	MULTI-MSMS	OvCa9_classI_Rep2	2	546.2859497070312	2	546.288637	1090.56272	-0.56605	-0.00030923	-3.8339	-0.0020944	-4.4	-0.0024037	546.2863258210423	137.01	1.2304	136.78	136.4	137.63	-0.22697					54	25	3	0	0	0	0.56889	1	13612	13612		35.618	1.4457	1	145390	+		32789	16748	26983	27008	36140	36140					0.021061321021079493
LLTRRNFL	8	Unmodified	_LLTRRNFL_					0	0	0		nc|ENSG00000137203|P05549-2|TFAP2A	nc|ENSG00000137203|P05549-2|TFAP2A	nc|ENSG00000137203|P05549-2|TFAP2A	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.8207397460938	2	516.819276	1031.624	-0.44484	-0.0002299	3.4065	0.0017605	2.9616	0.0015306	516.8209267024497	20.706	0.8079	19.367	19.158	19.966	-1.3386					28	16	2	0	0	0	0.75241	1	84	84		25.45	1.2474	1	36457			32790	15039	26984	27009	36141	36141					0.10945148188034182
LLTRRSQL	8	Unmodified	_LLTRRSQL_					0	0	0			REV__ENST00000373178.4_1_1:36559063-36559231:+|nuORF	REV__ENST00000373178.4_1_1:36559063-36559231:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.8086853027344	2	493.808908	985.603263	0.72189	0.00035648	-1.0814	-0.00053399	-0.35948	-0.00017751	493.8082033689365	31.126	0.76694	28.595	28.34	29.107	-2.5308					53	29	3	0	0	0	0.75241	1	667	667		25.45	1.2474	1	34842	+		32791	25029	26985	27010	36142	36142					0.10988557808377664
LLTRRSYYT	9	Unmodified	_LLTRRSYYT_					0	0	0			REV__ENSG00000146360|ENST00000275169|GPR6	REV__ENSG00000146360|ENST00000275169|GPR6	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.8230590820312	2	586.824755	1171.63496	-2.8595	-0.001678	1.0473	0.0006146	-1.8121	-0.0010634	586.8252260558515	149.49	1.5706	148.05	147.61	149.18	-1.4344					87	31	4	0	0	0	0.62352	1	14718	14718		29.15	6.5699	1	272440	+		32792	20010	26986	27011	36143	36143					0.056005057716674855
LLTRRWTP	8	Unmodified	_LLTRRWTP_					0	0	0			REV__ENSG00000135596|ENST00000358807|MICAL1	REV__ENSG00000135596|ENST00000358807|MICAL1	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.3312377929688	2	521.811451	1041.60835	0.17333	9.0444E-05	-2.5187	-0.0013143	-2.3454	-0.0012239	521.8098165099517	135.27	1.2744	135.04	134.49	135.76	-0.22697					38	25	3	0	0	0	0.028476	1	13357	13357		30.504	3.7075	1	42921	+		32793	19302	26987	27012	36144	36144					0.08920861671003877
LLTRWRKFW	9	Unmodified	_LLTRWRKFW_					0	0	0		nc|ENSG00000070985|Q9NZQ8-2|TRPM5;ENSG00000070985|ENST00000696290|TRPM5;nc|ENSG00000070985|Q9NZQ8-3|TRPM5	nc|ENSG00000070985|Q9NZQ8-2|TRPM5	nc|ENSG00000070985|Q9NZQ8-2|TRPM5	MULTI-SECPEP	OvCa9_classI_Rep2	2	436.8801574707031	3	435.924142	1304.7506	-0.83764	-0.00036515	3.7889	0.0016517	2.9512	0.0012865	436.2610556095476	63.56	0.15594	60.816	60.739	60.895	-2.7444					4	2	2	0	0	0	0.027462	1	4816	4816		49.536	31.005	1	3157.5			32794	1442	26988	27013	36145	36145					0.11041074413151364
LLTSDLTVRI	10	Unmodified	_LLTSDLTVRI_					0	0	0		ENSG00000142235|ENST00000600059|LMTK3	ENSG00000142235|ENST00000600059|LMTK3	ENSG00000142235|ENST00000600059|LMTK3	MULTI-SECPEP	OvCa9_classI_Rep2	2	566.815673828125	2	565.842613	1129.67067	0.10581	5.987E-05	-2.2676	-0.0012831	-2.1618	-0.0012232	565.8414933865079	109.5	0.24712	109.33	109.17	109.41	-0.17236					6	4	2	0	0	0	0.027028	1	10273	10273		24.519	0.99649	1	4978.4			32795	4964	26989	27014	36146	36146					0.11102543228662398
LLTSQNLP	8	Unmodified	_LLTSQNLP_					0	0	0		ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	443.2738342285156	2	443.255643	884.496732	1.1732	0.00052003	3.4517	0.00153	4.6249	0.00205	443.25559961504246	139.57	0.26149	138.07	137.94	138.2	-1.4952					5	4	2	0	0	0	0.028476	1	13595	13595		13.775	6.085	1	11127			32796	8873	26990	27015	36147	36147					0.04986382523202337
LLTSSDSSVII	11	Unmodified	_LLTSSDSSVII_					0	0	0		nc|ENSG00000115966|P15336-4|ATF2;nc|ENSG00000115966|P15336-5|ATF2;ENSG00000115966|ENST00000264110|ATF2;nc|ENSG00000115966|P15336-3|ATF2;nc|ENSG00000115966|P15336-7|ATF2	nc|ENSG00000115966|P15336-4|ATF2	nc|ENSG00000115966|P15336-4|ATF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.2804565429688	2	567.816261	1133.61797	2.335	0.0013259	3.5958	0.0020417	5.9308	0.0033676	568.3202085154576	110.74	0.22143	110.74	110.54	110.76	0					7	4	2	0	0	0	0.025909	1	12554	12554		19.997	3.5236	1	84753			32797	3143	26991	27016	36148	36148					0.0565054037522259
LLTSTLTVL	9	Unmodified	_LLTSTLTVL_					0	0	0		ENST00000369209.7_3_10:118434152-118434278:-|nuORF	ENST00000369209.7_3_10:118434152-118434278:-|nuORF	ENST00000369209.7_3_10:118434152-118434278:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.8006896972656	2	480.802426	959.590298	-3.2353	-0.0015556	0.26588	0.00012784	-2.9695	-0.0014277	480.80242897085384	151.49	1.9682	150.06	149.63	151.6	-1.4344					128	43	5	0	0	0	0.65476	1	14992	14992		25.45	3.4903	1	1260100			32798	10892	26992	27017	36149	36149					0.10888681905623798
LLTSVYQPTE	10	Unmodified	_LLTSVYQPTE_					0	0	0		ENST00000482723.1_1_17:72439553-72445018:+|nuORF;ENSG00000170412|ENST00000392627|GPRC5C;nc|ENSG00000170412|Q9NQ84-2|GPRC5C	ENST00000482723.1_1_17:72439553-72445018:+|nuORF	ENST00000482723.1_1_17:72439553-72445018:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	575.8514404296875	2	575.803154	1149.59175	0.5864	0.00033765	-0.099886	-5.7515E-05	0.48652	0.00028014	575.8021308359695	87.595	0.34811	86.164	85.891	86.239	-1.4311					10	6	2	0	0	0	0.027028	1	7649	7649		18.262	0	1	14351			32799	12576	26993	27018	36150	36150					0.02294271203709286
LLTTEIIPL	9	Unmodified	_LLTTEIIPL_					0	0	0		nc|ENSG00000144580|Q92600-3|CNOT9;ENSG00000144580|ENST00000273064|CNOT9;nc|ENSG00000144580|Q92600-2|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	nc|ENSG00000144580|Q92600-3|CNOT9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.765625	2	506.818076	1011.6216	-0.81539	-0.00041325	-2.8099	-0.0014241	-3.6253	-0.0018374	506.81624526457	63.318	0.76907	59.843	59.529	60.298	-3.475					29	15	3	0	0	0	0.027462	1	4475	4475		40.573	0	1	73427			32800	5161	26994	27019	36151	36151					0.11625254939724528
LLTTLCCR	8	Unmodified	_LLTTLCCR_					0	0	0			REV__ENSG00000156413|ENST00000318336|FUT6	REV__ENSG00000156413|ENST00000318336|FUT6	MULTI-MSMS	OvCa9_classI_Rep4_	4	461.74432373046875	2	461.746073	921.477594	-0.9628	-0.00044457	-1.8312	-0.00084555	-2.794	-0.0012901	461.74509928976033	117.12	2.1532	115.76	115.46	117.61	-1.3645					88	40	4	0	0	0	0.73626	1	10984	10984		33.516	7.9415	1	521240	+		32801	20476	26995	27020	36152	36152					0.013713866362763838
LLTTNAGVAL	10	Unmodified	_LLTTNAGVAL_					0	0	0			REV__ENSG00000184478|ENST00000641160|OR56A3	REV__ENSG00000184478|ENST00000641160|OR56A3	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.7890625	2	486.78985	971.565146	1.2441	0.00060563	-1.6395	-0.00079807	-0.39533	-0.00019244	486.78901485022004	129.19	1.2356	127.74	127.4	128.63	-1.4565					41	24	2	0	0	0	0.47142	1	12362	12362		58.23	3.4536	1	75838	+		32802	22432	26996	27021	36153	36153					0.07822627103041668
LLTTPLLEPH	10	Unmodified	_LLTTPLLEPH_					0	0	0			REV__tr|A0A553SGF6|A0A553SGF6_NIACISporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_10800PE=3SV=1	REV__tr|A0A553SGF6|A0A553SGF6_NIACISporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_10800PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3295288085938	2	567.331882	1132.64921	-3.474	-0.0019709	-0.21845	-0.00012393	-3.6925	-0.0020949	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.76627	1	12101	12101		23.042	1.0826	1	458690	+		32803	29693	26997	27022	36154	36154					0.08819158199980848
LLTVEYEEF	9	Unmodified	_LLTVEYEEF_					0	0	0		ENSG00000112706|ENST00000369950|IMPG1	ENSG00000112706|ENST00000369950|IMPG1	ENSG00000112706|ENST00000369950|IMPG1	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.7987670898438	2	571.78443	1141.55431	1.2687	0.00072542	1.2498	0.00071459	2.5184	0.00144	571.7852561278172	111.76	0.96272	111.76	111.38	112.34	0					57	20	4	0	0	0	0.02721	1	12682	12682		73.975	0	1	362720			32804	2922	26998	27023	36155	36155					-0.010808200619067065
LLTVGLLMVP	10	Unmodified	_LLTVGLLMVP_					0	0	0			REV__ENST00000435059.6_1_17:47781399-47785273:-|nuORF	REV__ENST00000435059.6_1_17:47781399-47785273:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.32763671875	2	528.330296	1054.64604	0.83538	0.00044135	-4.2139	-0.0022263	-3.3786	-0.001785	528.3278477712166	129.01	4.1824	127.56	127.15	131.33	-1.4565					215	84	4	0	0	0	0.62668	1	12511	12511		38.806	6.0556	1	383740	+		32805	18529	26999	27024	36156	36156					0.12090191821584995
LLTVLALLE	9	Unmodified	_LLTVLALLE_					0	0	0		ENST00000321027.7_3_2:75929435-75937941:-|nuORF	ENST00000321027.7_3_2:75929435-75937941:-|nuORF	ENST00000321027.7_3_2:75929435-75937941:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.8197326660156	2	492.820618	983.626684	-0.15633	-7.7044E-05	-2.9556	-0.0014566	-3.112	-0.0015336	492.8190082291614	62.974	3.1431	59.501	59.195	62.338	-3.4731					139	64	4	0	0	0	0.46377	1	4425	4425		45.952	7.1458	1	1132000			32806	10372	27000	27025	36157	36157					0.13421558802326672
LLTVTIMFW	9	Oxidation (M)	_LLTVTIM(Oxidation (M))FW_		LLTVTIM(1)FW		LLTVTIM(50)FW	0	0	1			REV__nc|ENSG00000141314|P58872-2|RHBDL3	REV__nc|ENSG00000141314|P58872-2|RHBDL3	MULTI-MSMS	OvCa99_classI_Rep5	1	570.3134765625	2	570.312103	1138.60965	2.1852	0.0012463	-2.6929	-0.0015358	-0.50763	-0.00028951	570.3104160088915	120.62	4.1316	120.62	119.65	123.79	0					235	92	4	0	0	0	0.42057	1	14020	14020		50.025	7.6284	1	6526800	+		32807	19726	27001	27026	36158	36158		448			0.04589314924874088
LLTWRIIV	8	Unmodified	_LLTWRIIV_					0	0	0			REV__ENSG00000175274|ENST00000525680|TP53I11	REV__ENSG00000175274|ENST00000525680|TP53I11	MULTI-MSMS	OvCa99_classI_Rep5	1	507.3279113769531	2	507.328945	1012.64334	-0.089361	-4.5336E-05	-4.3293	-0.0021964	-4.4187	-0.0022417	507.32665170920046	51.357	0.6681	51.357	51.12	51.788	0					35	15	3	0	0	0	0.2826	1	3950	3950		110.34	5.0684	1	1514700	+		32808	21887	27002	27027	36159	36159					0.13752104478953697
LLTWRIIV	8	Unmodified	_LLTWRIIV_					0	0	0			REV__ENSG00000175274|ENST00000525680|TP53I11	REV__ENSG00000175274|ENST00000525680|TP53I11	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	507.328945	1012.64334	-0.089361	-4.5336E-05	-4.3293	-0.0021964	-4.4187	-0.0022417	507.32665170920046	51.357	0.6681	51.357	51.12	51.788	0	0	0	NaN	110.34	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1514700	+		32809	21887	27002	27027							0.13752104478953697
LLTYKDQIL	9	Unmodified	_LLTYKDQIL_					0	0	0			REV__tr|A0A7D6VZ48|A0A7D6VZ48_9CLOTGlucosaminidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18685PE=4SV=1	REV__tr|A0A7D6VZ48|A0A7D6VZ48_9CLOTGlucosaminidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18685PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8284912109375	2	553.826432	1105.63831	-1.3531	-0.00074938	1.1376	0.00063002	-0.21552	-0.00011936	553.8271881968504	119.22	1.0378	117.87	117.52	118.56	-1.3444					37	19	3	0	0	0	0.56889	1	11190	11190		35.618	5.1146	1	54618	+		32810	31831	27003	27028	36160	36160					0.08971755825655237
LLTYYVKL	8	Unmodified	_LLTYYVKL_					0	0	0		ENSG00000185894|ENST00000382287|BPY2C;ENSG00000183795|ENST00000382392|BPY2B;ENSG00000183753|ENST00000331070|BPY2	ENSG00000185894|ENST00000382287|BPY2C	ENSG00000185894|ENST00000382287|BPY2C	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.2680969238281	2	506.807511	1011.60047	-1.5368	-0.00077886	-3.4423	-0.0017446	-4.9791	-0.0025234	506.8057221023124	86.849	1.3186	84.672	84.18	85.499	-2.1768					55	25	3	0	0	0	0.028476	1	5226	5226		55.504	7.5886	1	144580			32811	8102	27004	27029	36161	36161					0.09513289630842792
LLVAEIGAR	9	Unmodified	_LLVAEIGAR_					0	0	0			REV__ENSG00000183208|ENST00000329600|GDPGP1	REV__ENSG00000183208|ENST00000329600|GDPGP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.9099426269531	2	471.292559	940.570566	-0.3148	-0.00014837	1.4159	0.00066731	1.1011	0.00051894	471.2926823832427	51.731	0.75019	51.731	51.332	52.083	0					30	17	3	0	0	0	0.027462	1	4054	4054		31.955	13.63	1	216410	+		32812	22349	27005	27030	36162	36162					0.0979035068551184
LLVALDPAQI	10	Unmodified	_LLVALDPAQI_					0	0	0		ENST00000558773.1_1_15:89453862-89456532:-|nuORF	ENST00000558773.1_1_15:89453862-89456532:-|nuORF	ENST00000558773.1_1_15:89453862-89456532:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	526.8187255859375	2	526.82115	1051.62775	-1.9157	-0.0010092	-1.0156	-0.00053502	-2.9313	-0.0015443	526.8205460719952	63.159	1.6815	60.415	60.056	61.738	-2.7444					83	31	4	0	0	0	0.53885	1	4776	4776		49.442	3.4896	1	544680			32813	13704	27006	27031	36163	36163					0.10399773171229754
LLVALGRAM	9	Unmodified	_LLVALGRAM_					0	0	0			REV__ENSG00000085265|ENST00000371806|FCN1	REV__ENSG00000085265|ENST00000371806|FCN1	MULTI-MSMS	OvCa9_classI_Rep2	2	472.2873229980469	2	472.291505	942.568457	-3.3722	-0.0015927	-4.4722	-0.0021122	-7.8444	-0.0037048	472.2892568382278	150.85	1.4757	150.62	150.22	151.7	-0.22697					85	29	4	0	0	0	0.59983	1	15360	15360		31.955	3.7006	1	396600	+		32814	17130	27007	27032	36164	36164					0.09487598676059861
LLVALGRAM	9	Unmodified	_LLVALGRAM_					0	0	0			REV__ENSG00000085265|ENST00000371806|FCN1	REV__ENSG00000085265|ENST00000371806|FCN1	MULTI-MSMS	OvCa9_classI_Rep3	3	472.2878112792969	2	472.291505	942.568457	-4.0924	-0.0019328	-3.6504	-0.0017241	-7.7428	-0.0036569	472.28971542959135	151.08	2.3118	150.13	149.45	151.76	-0.95645					105	45	4	0	0	0	0.57242	3	12884	12864;12878;12884		35.201	6.5047	1	815680	+		32815	17130	27007	27032	36165;36166;36167	36167					0.09487598676059861
LLVAPIEV	8	Unmodified	_LLVAPIEV_					0	0	0			REV__nc|ENSG00000174227|Q5H8A4-3|PIGG	REV__nc|ENSG00000174227|Q5H8A4-3|PIGG	MULTI-MSMS	OvCa99_classI_Rep5	1	427.2745666503906	2	427.273304	852.532055	1.6743	0.0007154	0.61065	0.00026091	2.285	0.00097632	427.27342207211217	147.57	2.1036	147.57	147.21	149.31	0					75	42	3	0	0	0	0.59103	1	17276	17276		65.897	0	1	231720	+		32816	21817	27008	27033	36168	36168					0.09989045050997447
LLVAQLATG	9	Unmodified	_LLVAQLATG_					0	0	0			REV__LAYN|p.H56Mfs*7|1|0.12|ENSG00000204381|chr11:111543978-111543978|C/-|frameshift_variant	REV__LAYN|p.H56Mfs*7|1|0.12|ENSG00000204381|chr11:111543978-111543978|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	443.27294921875	2	443.273835	884.533118	-1.4905	-0.00066069	-1.4677	-0.00065059	-2.9582	-0.0013113	443.2730906196648	139.11	1.2789	138.05	137.68	138.96	-1.0595					59	25	3	0	0	0	0.6653	1	11427	11427		24.203	3.7209	1	174030	+		32817	23151	27009	27034	36169	36169					0.08623259419903206
LLVASIAK	8	Unmodified	_LLVASIAK_					0	0	0			REV__ENST00000485775.5_1_1:110582506-110596531:+|nuORF	REV__ENST00000485775.5_1_1:110582506-110596531:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.21771240234375	2	407.773471	813.53239	0.65655	0.00026773	-0.13704	-5.588E-05	0.51952	0.00021185	407.77316477734445	53.726	0.24512	53.726	53.609	53.854	0					8	5	2	0	0	0	0.028476	1	4289	4289		38.806	0	1	97577	+		32818	19815	27010	27035	36170	36170					0.11816464770845414
LLVATYGVTE	10	Unmodified	_LLVATYGVTE_					0	0	0		tr|A0A7D6ZT59|A0A7D6ZT59_9CLOTnon-specificprotein-tyrosinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18810PE=3SV=1	tr|A0A7D6ZT59|A0A7D6ZT59_9CLOTnon-specificprotein-tyrosinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18810PE=3SV=1	tr|A0A7D6ZT59|A0A7D6ZT59_9CLOTnon-specificprotein-tyrosinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18810PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.8131103515625	2	533.294965	1064.57538	0.6645	0.00035437	0.79673	0.00042489	1.4612	0.00077927	533.2951607112735	159.9	0.59543	159.9	159.71	160.31	0					24	11	3	0	0	0	0.027021	1	18793	18793		10.265	0	1	129350			32819	35748	27011	27036	36171	36171					0.04567190037596447
LLVAVLARHYQ	11	Unmodified	_LLVAVLARHYQ_					0	0	0			REV__ENSG00000089154|ENST00000300648|GCN1	REV__ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8828125	2	641.885147	1281.75574	-4.7067	-0.0030211	0.74437	0.0004778	-3.9623	-0.0025433	641.8854486748878	156.42	0.77325	154.87	154.64	155.41	-1.545					50	23	3	0	0	0	0.72499	1	15503	15503		15.642	5.3766	1	27475	+		32820	17200	27012	27037	36172	36172					0.12613333485114708
LLVAVLGVVAA	11	Unmodified	_LLVAVLGVVAA_					0	0	0			REV__ENSG00000107566|ENST00000421367|ERLIN1	REV__ENSG00000107566|ENST00000421367|ERLIN1	MULTI-SECPEP	OvCa9_classI_Rep3	3	512.8117065429688	2	512.841885	1023.66922	-0.393	-0.00020155	-3.4771	-0.0017832	-3.8701	-0.0019848	512.8396490609338	94.665	0.35277	92.769	92.511	92.864	-1.8956					10	6	2	0	0	0	0.025652	1	6119	6119		40.573	10.069	1	6438.7	+		32821	17851	27013	27038	36173	36173					0.15832953930555504
LLVAVRLHT	9	Unmodified	_LLVAVRLHT_					0	0	0		ENST00000428008.5_1_20:47895203-47895257:+|nuORF	ENST00000428008.5_1_20:47895203-47895257:+|nuORF	ENST00000428008.5_1_20:47895203-47895257:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	511.3269348144531	2	511.329476	1020.6444	-3.9215	-0.0020052	-0.26328	-0.00013462	-4.1848	-0.0021398	511.32921715256015	153.82	1.2958	153.59	153.28	154.58	-0.22696					76	27	4	0	0	0	0.58665	3	15659	15637;15659;15665		33.516	7.1258	1	348680			32822	11767	27014	27039	36174;36175;36176	36175					0.13490318847846083
LLVAVRLHT	9	Unmodified	_LLVAVRLHT_					0	0	0		ENST00000428008.5_1_20:47895203-47895257:+|nuORF	ENST00000428008.5_1_20:47895203-47895257:+|nuORF	ENST00000428008.5_1_20:47895203-47895257:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	511.32806396484375	2	511.329476	1020.6444	-5.3559	-0.0027386	0.93899	0.00048013	-4.4169	-0.0022585	511.3298778479252	153.96	1.1884	152.95	152.62	153.81	-1.0076					68	24	4	0	0	0	0.58665	3	13188	13188;13193;13205		33.516	9.3128	1	338570			32823	11767	27014	27039	36177;36178;36179	36177					0.13490318847846083
LLVAVRLHT	9	Unmodified	_LLVAVRLHT_					0	0	0		ENST00000428008.5_1_20:47895203-47895257:+|nuORF	ENST00000428008.5_1_20:47895203-47895257:+|nuORF	ENST00000428008.5_1_20:47895203-47895257:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.32708740234375	2	511.329476	1020.6444	-4.4323	-0.0022664	-0.073534	-3.76E-05	-4.5058	-0.002304	511.3293417529648	154.42	1.6613	152.97	152.67	154.33	-1.4516					104	42	5	0	0	0	0.58665	2	15274	15274;15298		33.516	8.0654	1	1662600			32824	11767	27014	27039	36180;36181	36180					0.13490318847846083
LLVCFILV	8	Unmodified	_LLVCFILV_					0	0	0			REV__tr|A0A7D6VU72|A0A7D6VU72_9CLOTDUF1287domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00840PE=4SV=1	REV__tr|A0A7D6VU72|A0A7D6VU72_9CLOTDUF1287domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00840PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	461.2611389160156	2	460.2879	918.561247	0.19436	8.9461E-05	4.2455	0.0019542	4.4399	0.0020436	460.2896822540368	62.469	0.56324	62.469	62.253	62.816	0					21	13	2	0	0	0	0.028476	1	5552	5552		33.493	0	1	423210	+		32825	31657	27015	27040	36182	36182					0.09870866075630147
LLVCILVFRY	10	Unmodified	_LLVCILVFRY_					0	0	0		tr|A0A553SLL2|A0A553SLL2_NIACIPhosphatasePAP2familyproteinOS=NialliacirculansOX=1397GN=CEQ21_20820PE=4SV=1	tr|A0A553SLL2|A0A553SLL2_NIACIPhosphatasePAP2familyproteinOS=NialliacirculansOX=1397GN=CEQ21_20820PE=4SV=1	tr|A0A553SLL2|A0A553SLL2_NIACIPhosphatasePAP2familyproteinOS=NialliacirculansOX=1397GN=CEQ21_20820PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8685302734375	2	619.87012	1237.72569	-3.6059	-0.0022352	2.4439	0.0015149	-1.162	-0.00072031	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.64063	2	12893	12893;13108		37.159	7.9891	1	664560			32826	33738	27016	27041	36183;36184	36183					0.11633258495589871
LLVCILVFRY	10	Unmodified	_LLVCILVFRY_					0	0	0		tr|A0A553SLL2|A0A553SLL2_NIACIPhosphatasePAP2familyproteinOS=NialliacirculansOX=1397GN=CEQ21_20820PE=4SV=1	tr|A0A553SLL2|A0A553SLL2_NIACIPhosphatasePAP2familyproteinOS=NialliacirculansOX=1397GN=CEQ21_20820PE=4SV=1	tr|A0A553SLL2|A0A553SLL2_NIACIPhosphatasePAP2familyproteinOS=NialliacirculansOX=1397GN=CEQ21_20820PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.869140625	2	619.87012	1237.72569	-1.8762	-0.001163	0.78566	0.000487	-1.0905	-0.00067597	619.8704234308321	147.79	3.8764	146.35	144.25	148.12	-1.4351					189	77	4	0	0	0	0.64063	1	14500	14500		37.159	7.9891	1	269210			32827	33738	27016	27041	36185	36185					0.11633258495589871
LLVCILVFRY	10	Unmodified	_LLVCILVFRY_					0	0	0		tr|A0A553SLL2|A0A553SLL2_NIACIPhosphatasePAP2familyproteinOS=NialliacirculansOX=1397GN=CEQ21_20820PE=4SV=1	tr|A0A553SLL2|A0A553SLL2_NIACIPhosphatasePAP2familyproteinOS=NialliacirculansOX=1397GN=CEQ21_20820PE=4SV=1	tr|A0A553SLL2|A0A553SLL2_NIACIPhosphatasePAP2familyproteinOS=NialliacirculansOX=1397GN=CEQ21_20820PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.869140625	2	619.87012	1237.72569	-3.1194	-0.0019336	1.8959	0.0011752	-1.2235	-0.00075843	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.76627	1	14803	14803		23.042	2.0956	1	806750			32828	33738	27016	27041	36186	36186					0.11633258495589871
LLVCRRKLLL	10	Unmodified	_LLVCRRKLLL_					0	0	0			REV__ENST00000416221.5_1_1:231664187-231664235:-|nuORF	REV__ENST00000416221.5_1_1:231664187-231664235:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	409.6077880859375	3	409.609166	1225.80567	0.6889	0.00028218	-3.5824	-0.0014674	-2.8935	-0.0011852	409.60766459120623	104.29	12.102	103.72	103.28	115.38	-0.57639					699	244	5	0	0	0	0.50999	3	9761	9743;9761;9889		52.937	7.5419	1	1628000	+		32829	25542	27017	27042	36187;36188;36189	36188					0.20179744889424
LLVCRRKLLL	10	Unmodified	_LLVCRRKLLL_					0	0	0			REV__ENST00000416221.5_1_1:231664187-231664235:-|nuORF	REV__ENST00000416221.5_1_1:231664187-231664235:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	409.6077575683594	3	409.609166	1225.80567	1.1396	0.00046679	-4.0732	-0.0016684	-2.9336	-0.0012016	409.6074659919173	107.95	5.8573	106.76	106.27	112.13	-1.1978					409	114	4	0	0	0	0.6349	1	7702	7702		37.812	2.6595	1	1037400	+		32830	25542	27017	27042	36190	36190					0.20179744889424
LLVCRRKLLL	10	Unmodified	_LLVCRRKLLL_					0	0	0			REV__ENST00000416221.5_1_1:231664187-231664235:-|nuORF	REV__ENST00000416221.5_1_1:231664187-231664235:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	409.6082763671875	3	409.609166	1225.80567	0.55096	0.00022568	-3.5737	-0.0014638	-3.0228	-0.0012382	409.60762934156605	108.64	8.1164	106.92	106.42	114.53	-1.7256					461	158	5	0	0	0	0.58067	1	10077	10077		44.377	2.9506	1	863570	+		32831	25542	27017	27042	36191	36191					0.20179744889424
LLVEFIAHLL	10	Unmodified	_LLVEFIAHLL_					0	0	0			REV__ENSG00000184575|ENST00000332707|XPOT	REV__ENSG00000184575|ENST00000332707|XPOT	MULTI-MSMS	OvCa9_classI_Rep3	3	584.355712890625	2	584.360442	1166.70633	-4.6254	-0.0027029	-2.3023	-0.0013454	-6.9277	-0.0040483	584.3589865391973	145.25	4.5766	144.28	142.9	147.48	-0.97299					233	91	4	0	0	0	0.76627	1	12206	12206		23.042	1.0826	1	156220	+		32832	22441	27018	27043	36192	36192					0.1296462547632018
LLVEGTSPKI	10	Unmodified	_LLVEGTSPKI_					0	0	0			REV__tr|A0A553SHZ4|A0A553SHZ4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13855PE=4SV=1	REV__tr|A0A553SHZ4|A0A553SHZ4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13855PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.8201293945312	2	528.818607	1055.62266	0.74463	0.00039377	-0.83544	-0.0004418	-0.090816	-4.8025E-05	528.8181216301339	138.8	0.89726	137.27	137.01	137.91	-1.5284					29	17	2	0	0	0	0.62299	1	13551	13551		39.253	2.0937	1	48587			32833	29855	27019	27044	36193	36193					0.09707469308614236
LLVEIYSDKM	10	Unmodified	_LLVEIYSDKM_					0	0	0			REV__nc|ENSG00000123130|Q9Y305-3|ACOT9	REV__nc|ENSG00000123130|Q9Y305-3|ACOT9	MULTI-SECPEP	OvCa99_classI_Rep5	1	605.8018188476562	2	605.823032	1209.63151	2.2739	0.0013776	1.1184	0.00067753	3.3923	0.0020551	605.8235039031811	93.508	5.3726	93.508	93.179	98.552	0					187	126	3	0	0	0	0.026734	1	10595	10595		47.657	8.4045	1	1719700	+		32834	18626	27020	27045	36194	36194					0.035080748827795105
LLVESRGLLPA	11	Unmodified	_LLVESRGLLPA_					0	0	0		ENST00000505991.1_1_4:25378960-25382068:+|nuORF	ENST00000505991.1_1_4:25378960-25382068:+|nuORF	ENST00000505991.1_1_4:25378960-25382068:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3563232421875	2	584.358431	1166.70231	-1.7162	-0.0010029	-1.68	-0.00098173	-3.3962	-0.0019846	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.64273	1	14507	14507		40.778	7.9657	1	833330			32835	12901	27021	27046	36195	36195					0.12562535982624468
LLVFGFPLL	9	Unmodified	_LLVFGFPLL_					0	0	0			REV__ENSG00000171054|ENST00000338616|OR13H1	REV__ENSG00000171054|ENST00000338616|OR13H1	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.8200988769531	2	509.820421	1017.62629	-0.40335	-0.00020564	-3.7023	-0.0018875	-4.1056	-0.0020931	509.818396147904	123.54	1.1963	122.17	121.9	123.1	-1.3666					47	23	3	0	0	0	0.22187	1	11725	11725		72.62	0	1	110440	+		32836	21589	27022	27047	36196	36196					0.11818183873151611
LLVFGVWIL	9	Unmodified	_LLVFGVWIL_					0	0	0		ST3GAL5|p.P371Lfs*16|1|0.14|ENSG00000115525|chr2:85840279-85840289|GTAGTGCAAAG/-|frameshift_variant;nc|ENSG00000115525|Q9UNP4-2|ST3GAL5;nc|ENSG00000115525|Q9UNP4-3|ST3GAL5;ENSG00000115525|ENST00000638572|ST3GAL5;ENST00000484728.6_2_2:86088279-86116028:-|nuORF	ST3GAL5|p.P371Lfs*16|1|0.14|ENSG00000115525|chr2:85840279-85840289|GTAGTGCAAAG/-|frameshift_variant	ST3GAL5|p.P371Lfs*16|1|0.14|ENSG00000115525|chr2:85840279-85840289|GTAGTGCAAAG/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.8340454101562	2	530.333696	1058.65284	3.2711	0.0017348	1.8451	0.00097851	5.1162	0.0027133	530.3345541598645	131.8	0.25616	130.3	130.12	130.38	-1.5015					9	4	3	0	0	0	0.027462	1	12680	12680		29.842	0	1	32586			32837	3104	27023	27048	36197	36197					0.12585872764475425
LLVFLRQL	8	Unmodified	_LLVFLRQL_					0	0	0			REV__nc|ENSG00000170242|Q96K76-2|USP47	REV__nc|ENSG00000170242|Q96K76-2|USP47	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.2895812988281	2	501.328945	1000.64334	-0.68467	-0.00034324	-2.4164	-0.0012114	-3.1011	-0.0015547	501.3274708329275	135.53	0.58798	135.3	134.78	135.37	-0.22696					14	11	2	0	0	0	0.028476	1	13447	13447		8.8223	0	1	41118	+		32838	21523	27024	27049	36198	36198					0.14304104478935642
LLVFPAGELP	10	Unmodified	_LLVFPAGELP_					0	0	0			REV__ENST00000434679.5_1_X:153170523-153172179:+|nuORF	REV__ENST00000434679.5_1_X:153170523-153172179:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	528.3096313476562	2	528.310418	1054.60628	2.3316	0.0012318	-4.1497	-0.0021923	-1.8181	-0.00096054	528.3081126459773	84.533	0.78493	84.533	84.261	85.046	0					49	18	4	0	0	0	0.47435	1	8875	8875		57.811	3.035	1	6921400	+		32839	18803	27025	27050	36199	36199					0.08116388142502728
LLVFSLWSEPV	11	Unmodified	_LLVFSLWSEPV_					0	0	0		ENST00000339733.9_2_14:23596388-23597552:-|nuORF;ENST00000397310.6_1_14:23596388-23599053:-|nuORF;nc|ENSG00000092068|Q9UHI5-3|SLC7A8;nc|ENSG00000092068|Q9UHI5-2|SLC7A8;nc|ENSG00000092068|Q9UHI5-4|SLC7A8;ENSG00000092068|ENST00000316902|SLC7A8	ENST00000339733.9_2_14:23596388-23597552:-|nuORF	ENST00000339733.9_2_14:23596388-23597552:-|nuORF	MSMS	OvCa99_classI_Rep5	1	645.3644409179688	2	645.360639	1288.70673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.7	1	120.7	120.2	121.2	0								0	0	0	0.19474	1	13876	13876		29.15	2.4566	1				32840	1884	27026	27051	36200	36200					0.07392000405502586
LLVFWEIV	8	Unmodified	_LLVFWEIV_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	OvCa9_classI_Rep3	3	509.802978515625	2	509.802229	1017.5899	-1.31	-0.00066782	4.1509	0.0021161	2.841	0.0014483	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.72922	1	11165	11165		37.028	5.0736	1	99460			32841	3919	27027	27052	36201	36201					0.08181306976416636
LLVGAHLNIV	10	Unmodified	_LLVGAHLNIV_					0	0	0		CON__Q1A7A4	CON__Q1A7A4	CON__Q1A7A4	MULTI-MSMS	OvCa9_classI_Rep3	3	524.8262939453125	2	524.829309	1047.64407	-6.4209	-0.0033699	2.2692	0.001191	-4.1517	-0.0021789	524.8303693371411	156.49	1.5557	155.32	154.95	156.51	-1.1687					100	33	5	0	0	0	0.81289	1	13560	13560		17.365	0	1	1025700		+	32842	636	27028	27053	36202	36202					0.12214899127957324
LLVGGAGIQDL	11	Unmodified	_LLVGGAGIQDL_					0	0	0		ENST00000262735.9_1_22:46639202-46639412:+|nuORF	ENST00000262735.9_1_22:46639202-46639412:+|nuORF	ENST00000262735.9_1_22:46639202-46639412:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	528.310302734375	2	528.308406	1054.60226	2.3316	0.0012318	-0.34254	-0.00018096	1.989	0.0010508	528.3081126459773	84.533	0.78493	84.533	84.261	85.046	0					49	18	4	0	0	0	0.17933	1	8815	8815		82.75	0.50997	1	6921400			32843	9900	27029	27054	36203	36203					0.07714298648807016
LLVGHRNI	8	Unmodified	_LLVGHRNI_					0	0	0			REV__nc|ENSG00000169994|Q6PIF6|MYO7B	REV__nc|ENSG00000169994|Q6PIF6|MYO7B	MULTI-SECPEP	OvCa99_classI_Rep5	1	461.2611389160156	2	461.285069	920.555585	0.17448	8.0484E-05	0.037121	1.7124E-05	0.2116	9.7608E-05	461.284949850384	62.575	0.60682	62.575	62.253	62.86	0					35	14	3	0	0	0	0.028476	1	5552	5552		42.474	0	1	1340900	+		32844	21507	27030	27055	36204	36204					0.09212903608181477
LLVGISLLL	9	Unmodified	_LLVGISLLL_					0	0	0			REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2	REV__nc|ENSG00000152404|Q2TBE0-3|CWF19L2	MULTI-MSMS	OvCa99_classI_Rep5	1	470.8270568847656	2	470.825704	939.636855	0.66106	0.00031124	-0.10183	-4.7944E-05	0.55923	0.0002633	470.82550127095874	161.06	3.0909	161.06	159.47	162.56	0					174	61	3	0	0	0	0.11842	1	18738	18738		92.191	3.5478	1	597670	+		32845	28931	27031	27056	36205	36205					0.16462166527560385
LLVGLMLFV	9	Unmodified	_LLVGLMLFV_					0	0	0			REV__ENST00000262965.9_1_19:1610831-1610951:-|nuORF	REV__ENST00000262965.9_1_19:1610831-1610951:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.81396484375	2	502.814282	1003.61401	-4.7582	-0.0023925	4.1648	0.0020941	-0.59341	-0.00029838	502.8162748013114	154.42	1.5526	152.97	152.64	154.2	-1.4516					113	39	4	0	0	0	0.68641	1	15334	15334		21.702	0	1	1254800	+		32846	23987	27032	27057	36206	36206					0.11234824138443855
LLVGNLSI	8	Unmodified	_LLVGNLSI_					0	0	0			REV__tr|A0A7D6VUL9|A0A7D6VUL9_9CLOTHemolysinIIIfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21055PE=3SV=1	REV__tr|A0A7D6VUL9|A0A7D6VUL9_9CLOTHemolysinIIIfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21055PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.7618713378906	2	414.763104	827.511654	0.81	0.00033596	-4.0428	-0.0016768	-3.2328	-0.0013408	414.7613377091018	141.2	2.8207	139.74	138.79	141.61	-1.4627					131	54	4	0	0	0	0.7549	1	13880	13880		24.203	2.5004	1	1536400	+		32847	31687	27033	27058	36207	36207					0.09099874391188223
LLVGRLPSIAA	11	Unmodified	_LLVGRLPSIAA_					0	0	0		tr|A0A7D6VNP4|A0A7D6VNP4_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16150PE=3SV=1	tr|A0A7D6VNP4|A0A7D6VNP4_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16150PE=3SV=1	tr|A0A7D6VNP4|A0A7D6VNP4_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16150PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	555.3530883789062	2	555.355691	1108.69683	-4.1933	-0.0023288	0.44804	0.00024882	-3.7453	-0.00208	555.3557970844861	158.57	1.1439	158.34	158.06	159.2	-0.22696					59	23	4	0	0	0	0.72459	1	16106	16106		20.947	0	1	239990			32848	34721	27034	27059	36208	36208					0.14682857190814502
LLVGRLPSIAA	11	Unmodified	_LLVGRLPSIAA_					0	0	0		tr|A0A7D6VNP4|A0A7D6VNP4_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16150PE=3SV=1	tr|A0A7D6VNP4|A0A7D6VNP4_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16150PE=3SV=1	tr|A0A7D6VNP4|A0A7D6VNP4_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16150PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.3536987304688	2	555.355691	1108.69683	-5.7234	-0.0031785	1.8077	0.0010039	-3.9157	-0.0021746	555.3566390635189	159.36	1.8651	157.77	157.41	159.27	-1.5858					127	42	5	0	0	0	0.70865	1	15720	15720		26.693	3.6504	1	1093300			32849	34721	27034	27059	36209	36209					0.14682857190814502
LLVGSRRLV	9	Unmodified	_LLVGSRRLV_					0	0	0		nc|ENSG00000089094|Q8NHM5-3|KDM2B;ENSG00000089094|ENST00000377071|KDM2B;nc|ENSG00000089094|Q8NHM5-4|KDM2B;nc|ENSG00000089094|Q8NHM5-2|KDM2B;KDM2B|p.T484Hfs*28|1|0.13|ENSG00000089094|chr12:121509765-121509766|-/A|frameshift_variant;nc|ENSG00000089094|Q8NHM5-5|KDM2B	nc|ENSG00000089094|Q8NHM5-3|KDM2B	nc|ENSG00000089094|Q8NHM5-3|KDM2B	MULTI-MSMS	OvCa99_classI_Rep5	1	506.8346252441406	2	506.834926	1011.6553	-0.90896	-0.00046069	-0.10194	-5.1666E-05	-1.0109	-0.00051236	506.83492413271784	37.046	0.64259	37.046	36.796	37.438	0					50	13	5	0	0	0	0.34496	1	1990	1990		57.811	2.3071	1	7390100			32850	1809	27035	27060	36210	36210					0.1499372122211753
LLVGTLWSLLL	11	Unmodified	_LLVGTLWSLLL_					0	0	0			REV__tr|A0A553ST15|A0A553ST15_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_04070PE=4SV=1	REV__tr|A0A553ST15|A0A553ST15_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_04070PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	614.3849487304688	2	614.389199	1226.76385	-5.0786	-0.0031202	-1.6877	-0.0010369	-6.7663	-0.0041571	614.387997754013	157.04	0.77016	156.81	156.57	157.34	-0.22696					47	20	3	0	0	0	0.72499	1	15986	15986		15.642	0	1	63796	+		32851	30904	27036	27061	36211	36211					0.15953467681902112
LLVGYSWVD	9	Unmodified	_LLVGYSWVD_					0	0	0			REV__MAP3K9|p.Q696Sfs*20|1|0.12|ENSG00000006432|chr14:70733283-70733284|-/A|frameshift_variant;REV__nc|ENSG00000120156|Q02763-2|TEK	REV__nc|ENSG00000120156|Q02763-2|TEK	MULTI-MSMS	OvCa99_classI_Rep5	1	526.2774658203125	2	526.276575	1050.5386	0.76477	0.00040248	1.0065	0.00052969	1.7713	0.00093217	526.2770302890268	156.67	0.90448	156.67	156.29	157.2	0					45	17	5	0	0	0	0.34496	1	18375	18375		57.811	3.0466	1	391610	+		32852	18487;16415	27037	27062	36212	36212					0.015349382117165078
LLVHKERSD	9	Unmodified	_LLVHKERSD_					0	0	0			REV__nc|ENSG00000227942|Q9BZ68|FRMD8P1	REV__nc|ENSG00000227942|Q9BZ68|FRMD8P1	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.811279296875	2	548.809105	1095.60366	0.3666	0.0002012	-0.53657	-0.00029448	-0.16997	-9.328E-05	548.8086539011326	31.509	1.022	28.978	28.574	29.596	-2.5308					57	38	2	0	0	0	0.69666	1	689	689		19.104	4.2386	1	20104	+		32853	18782	27038	27063	36213	36213					0.059679327375761204
LLVHYILL	8	Unmodified	_LLVHYILL_					0	0	0			REV__NF1|p.M1949Ifs*2|1|0.67|ENSG00000196712|chr17:31334870-31334888|ATGACTCCATGGCTGTCAA/-|frameshift_variant	REV__NF1|p.M1949Ifs*2|1|0.67|ENSG00000196712|chr17:31334870-31334888|ATGACTCCATGGCTGTCAA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	492.3182373046875	2	492.318046	982.621539	-0.45846	-0.00022571	-3.9038	-0.0019219	-4.3623	-0.0021476	492.31603122769184	98.824	1.4451	97.139	96.852	98.297	-1.685					69	27	4	0	0	0	0.64315	1	6617	6617		54.895	0	1	818000	+		32854	22859	27039	27064	36214	36214					0.1295329973038406
LLVIGGPTAV	10	Unmodified	_LLVIGGPTAV_					0	0	0		tr|A0A7D6VUL2|A0A7D6VUL2_9CLOTtRNAdimethylallyltransferaseOS=ClostridiumintestinaleOX=36845GN=miaAPE=3SV=1	tr|A0A7D6VUL2|A0A7D6VUL2_9CLOTtRNAdimethylallyltransferaseOS=ClostridiumintestinaleOX=36845GN=miaAPE=3SV=1	tr|A0A7D6VUL2|A0A7D6VUL2_9CLOTtRNAdimethylallyltransferaseOS=ClostridiumintestinaleOX=36845GN=miaAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	470.2957763671875	2	470.29731	938.580068	-0.49251	-0.00023162	-2.9033	-0.0013654	-3.3958	-0.001597	470.29591238963496	32.315	1.7376	29.606	29.382	31.119	-2.7097					90	34	5	0	0	0	0.69986	1	1089	1089		30.504	2.6214	1	1326000			32855	35192	27040	27065	36215	36215					0.10832118971029558
LLVIRNHI	8	Unmodified	_LLVIRNHI_					0	0	0		tr|A0A7D6ZK60|A0A7D6ZK60_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11290PE=4SV=1	tr|A0A7D6ZK60|A0A7D6ZK60_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11290PE=4SV=1	tr|A0A7D6ZK60|A0A7D6ZK60_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11290PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.3125	2	489.316369	976.618185	-3.028	-0.0014817	-1.2985	-0.00063537	-4.3265	-0.002117	489.31563425823117	151.49	1.5662	150.06	149.67	151.24	-1.4344					103	34	4	0	0	0	0.74679	1	15043	15043		28.254	1.4582	1	763840			32856	35658	27041	27066	36216	36216					0.12894049676367558
LLVITYPLM	9	Unmodified	_LLVITYPLM_					0	0	0		nc|ENSG00000173085|Q96H96-3|COQ2;ENSG00000173085|ENST00000647002|COQ2;nc|ENSG00000173085|Q96H96-6|COQ2;nc|ENSG00000173085|Q96H96-5|COQ2;nc|ENSG00000173085|Q96H96-4|COQ2	nc|ENSG00000173085|Q96H96-3|COQ2	nc|ENSG00000173085|Q96H96-3|COQ2	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8172607421875	2	531.817021	1061.61949	-1.8698	-0.0009944	1.6543	0.0008798	-0.21549	-0.0001146	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.6653	1	14069	14069		24.203	4.206	1	166960			32857	7347	27042	27067	36217	36217					0.09114502930242452
LLVITYPLM	9	Unmodified	_LLVITYPLM_					0	0	0		nc|ENSG00000173085|Q96H96-3|COQ2;ENSG00000173085|ENST00000647002|COQ2;nc|ENSG00000173085|Q96H96-6|COQ2;nc|ENSG00000173085|Q96H96-5|COQ2;nc|ENSG00000173085|Q96H96-4|COQ2	nc|ENSG00000173085|Q96H96-3|COQ2	nc|ENSG00000173085|Q96H96-3|COQ2	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.818603515625	2	531.817021	1061.61949	0.089047	4.7357E-05	-0.13274	-7.0593E-05	-0.043692	-2.3236E-05	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.57242	1	13682	13682		35.201	8.5078	1	263230			32858	7347	27042	27067	36218	36218					0.09114502930242452
LLVKDFNLLHW	11	Unmodified	_LLVKDFNLLHW_					0	0	0		ENST00000438529.1_1_7:63573643-63575167:+|nuORF	ENST00000438529.1_1_7:63573643-63575167:+|nuORF	ENST00000438529.1_1_7:63573643-63575167:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.2379455566406	3	466.602845	1396.78671	-1.0357	-0.00048328	2.8014	0.0013071	1.7657	0.00082386	466.60422553314174	44.527	0.35529	41.489	41.258	41.613	-3.0385					9	6	2	0	0	0	0.026158	1	2217	2217		27.047	6.2102	1	12591			32859	11901	27043	27068	36219	36219					0.10418486799380844
LLVKKASS	8	Unmodified	_LLVKKASS_					0	0	0		tr|A0A7D6ZTC3|A0A7D6ZTC3_9CLOTPhosphocarrierproteinHPrOS=ClostridiumintestinaleOX=36845GN=HZF06_10780PE=4SV=1	REV__ENSG00000055483|ENST00000449938|USP36	REV__ENSG00000055483|ENST00000449938|USP36	MULTI-MSMS	OvCa9_classI_Rep2	2	423.27496337890625	2	423.276378	844.538203	-1.0746	-0.00045487	-1.9263	-0.00081535	-3.0009	-0.0012702	423.27545611036373	140.26	1.6211	140.03	139.45	141.07	-0.22696					84	32	4	0	0	0	0.74394	1	14026	14026		13.775	2.9098	1	166850	+		32860	16711	27044	27069	36220	36220					0.10971563282521402
LLVKKASS	8	Unmodified	_LLVKKASS_					0	0	0		tr|A0A7D6ZTC3|A0A7D6ZTC3_9CLOTPhosphocarrierproteinHPrOS=ClostridiumintestinaleOX=36845GN=HZF06_10780PE=4SV=1	REV__ENSG00000055483|ENST00000449938|USP36	REV__ENSG00000055483|ENST00000449938|USP36	MULTI-MSMS	OvCa9_classI_Rep3	3	423.27447509765625	2	423.276378	844.538203	-1.5369	-0.00065052	-1.6206	-0.00068596	-3.1575	-0.0013365	423.27558847705467	140.82	1.576	139.79	139.38	140.96	-1.0339					74	31	4	0	0	0	0.74394	2	11599	11599;11641		20.482	5.8177	1	296010	+		32861	16711	27044	27069	36221;36222	36221					0.10971563282521402
LLVKKASS	8	Unmodified	_LLVKKASS_					0	0	0		tr|A0A7D6ZTC3|A0A7D6ZTC3_9CLOTPhosphocarrierproteinHPrOS=ClostridiumintestinaleOX=36845GN=HZF06_10780PE=4SV=1	REV__ENSG00000055483|ENST00000449938|USP36	REV__ENSG00000055483|ENST00000449938|USP36	MULTI-MSMS	OvCa9_classI_Rep4_	4	423.275634765625	2	423.276378	844.538203	0.49298	0.00020867	-3.7053	-0.0015684	-3.2124	-0.0013597	423.27473332954634	141.2	1.9317	139.74	139.4	141.33	-1.4627					94	36	4	0	0	0	0.74038	1	13842	13842		12.207	3.3845	1	1644700	+		32862	16711	27044	27069	36223	36223					0.10971563282521402
LLVKKGENS	9	Unmodified	_LLVKKGENS_					0	0	0		nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1;ENST00000589223.5_1_19:2102174-2111012:-|nuORF	nc|ENSG00000065000|O14617-4|AP3D1	nc|ENSG00000065000|O14617-4|AP3D1	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.7701110839844	2	494.295299	986.576045	-0.64213	-0.0003174	0.41416	0.00020472	-0.22796	-0.00011268	494.2953155346517	52.206	0.57038	52.206	51.995	52.566	0					20	12	3	0	0	0	0.027462	1	4127	4127		32.812	7.2384	1	896700			32863	1312	27045	27070	36224	36224					0.08222029477337855
LLVKKTPN	8	Unmodified	_LLVKKTPN_					0	0	0			REV__tr|A0A553SPP2|A0A553SPP2_NIACIHlyDfamilysecretionproteinOS=NialliacirculansOX=1397GN=CEQ21_26765PE=3SV=1	REV__tr|A0A553SPP2|A0A553SPP2_NIACIHlyDfamilysecretionproteinOS=NialliacirculansOX=1397GN=CEQ21_26765PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	456.7971496582031	2	456.797478	911.580402	0.29232	0.00013353	-0.61394	-0.00028045	-0.32162	-0.00014691	456.7971214119819	103.69	3.5724	103.12	102.73	106.3	-0.57639					168	71	3	0	0	0	0.2826	4	9617	9586;9617;9623;9630		110.34	12.865	1	1420000	+		32864	30557	27046	27071	36225;36226;36227;36228	36226					0.1210753869089558
LLVKKTPN	8	Unmodified	_LLVKKTPN_					0	0	0			REV__tr|A0A553SPP2|A0A553SPP2_NIACIHlyDfamilysecretionproteinOS=NialliacirculansOX=1397GN=CEQ21_26765PE=3SV=1	REV__tr|A0A553SPP2|A0A553SPP2_NIACIHlyDfamilysecretionproteinOS=NialliacirculansOX=1397GN=CEQ21_26765PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	456.7972106933594	2	456.797478	911.580402	0.40268	0.00018394	-0.77327	-0.00035323	-0.37058	-0.00016928	456.7970629432732	104.69	4.1681	103.25	102.81	106.98	-1.4342					186	80	4	0	0	0	0.35163	5	7357	7302;7337;7357;7374;7388		97.473	11.385	1	1565700	+		32865	30557	27046	27071	36229;36230;36231;36232;36233	36231					0.1210753869089558
LLVKKTPN	8	Unmodified	_LLVKKTPN_					0	0	0			REV__tr|A0A553SPP2|A0A553SPP2_NIACIHlyDfamilysecretionproteinOS=NialliacirculansOX=1397GN=CEQ21_26765PE=3SV=1	REV__tr|A0A553SPP2|A0A553SPP2_NIACIHlyDfamilysecretionproteinOS=NialliacirculansOX=1397GN=CEQ21_26765PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.79736328125	2	456.797478	911.580402	-0.19337	-8.8331E-05	-0.21738	-9.9301E-05	-0.41075	-0.00018763	456.7973138081142	105.4	4.1348	103.39	102.95	107.09	-2.0161					221	81	4	0	0	0	0.35163	3	9585	9561;9585;9720		97.473	20.158	1	1556700	+		32866	30557	27046	27071	36234;36235;36236	36235					0.1210753869089558
LLVKQNKTY	9	Unmodified	_LLVKQNKTY_					0	0	0		ENST00000473684.5_3_3:119149608-119149695:-|nuORF	ENST00000473684.5_3_3:119149608-119149695:-|nuORF	ENST00000473684.5_3_3:119149608-119149695:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	553.830078125	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.69895	1	14156	14156		18.324	0	1	245610			32867	12419	27047	27072	36237	36237					0.10094577919812764
LLVKRISQ	8	Unmodified	_LLVKRISQ_					0	0	0		ENSG00000178802|ENST00000352410|MPI	ENSG00000178802|ENST00000352410|MPI	ENSG00000178802|ENST00000352410|MPI	MULTI-MSMS	OvCa9_classI_Rep3	3	478.8168029785156	2	478.816202	955.617851	1.0861	0.00052004	-1.1013	-0.00052731	-0.015197	-7.2768E-06	478.81554679630005	69.339	1.3951	66.524	66.312	67.707	-2.8143					70	27	4	0	0	0	0.65062	1	3087	3087		53.351	0	1	309060			32868	7778	27048	27073	36238	36238					0.13826629956508896
LLVKRLVSPE	10	Unmodified	_LLVKRLVSPE_					0	0	0			REV__ENST00000478452.1_1_10:99221527-99222458:-|nuORF	REV__ENST00000478452.1_1_10:99221527-99222458:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	577.3671875	2	577.368798	1152.72304	-5.5665	-0.0032139	2.1457	0.0012388	-3.4208	-0.0019751	577.369928690125	160.74	1.397	160.51	160.13	161.53	-0.22696					95	27	5	0	0	0	0.82648	1	16400	16400		15.642	0	1	1195800	+		32869	20417	27049	27074	36239	36239					0.1527912636227029
LLVKRWKK	8	Unmodified	_LLVKRWKK_					0	0	0		ENSG00000139146|ENST00000337682|SINHCAF;ENST00000591086.1_1_18:57684440-57684650:-|nuORF	ENSG00000139146|ENST00000337682|SINHCAF	ENSG00000139146|ENST00000337682|SINHCAF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.8329467773438	2	535.863486	1069.71242	3.1463	0.001686	-1.7221	-0.00092282	1.4241	0.00076315	535.8625543220235	102.36	0.29668	102.36	102.29	102.59	0					10	6	2	0	0	0	0.028476	1	11440	11440		20.482	10.776	1	254090			32870	4746	27050	27075	36240	36240					0.1803518849849297
LLVKVKAQTID	11	Unmodified	_LLVKVKAQTID_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	OvCa9_classI_Rep3	3	614.3851318359375	2	614.387188	1226.75982	-4.8757	-0.0029956	1.5212	0.00093458	-3.3545	-0.002061	614.3879084256669	157.16	1.131	155.99	155.65	156.79	-1.1707					59	27	4	0	0	0	0.70865	1	13559	13559		26.693	4.733	1	104880			32871	3721	27051	27076	36241	36241					0.15551378188183662
LLVLASTSI	9	Unmodified	_LLVLASTSI_					0	0	0		ENST00000361813.5_1_1:156246878-156247780:-|nuORF	ENST00000361813.5_1_1:156246878-156247780:-|nuORF	ENST00000361813.5_1_1:156246878-156247780:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	458.78778076171875	2	458.789318	915.564084	-2.0925	-0.00096003	-0.91741	-0.0004209	-3.0099	-0.0013809	458.7887619770069	147.55	1.9467	147.32	146.82	148.77	-0.22697					104	38	4	0	0	0	0.6653	1	14924	14924		24.203	1.1603	1	613710			32872	10803	27052	27077	36242	36242					0.10292412734145273
LLVLCSFLLLF	11	Unmodified	_LLVLCSFLLLF_					0	0	0		TMEM219|p.G209C|1|0.09|ENSG00000149932|chr16:29971447-29971447|G/T|missense_variant	TMEM219|p.G209C|1|0.09|ENSG00000149932|chr16:29971447-29971447|G/T|missense_variant	TMEM219|p.G209C|1|0.09|ENSG00000149932|chr16:29971447-29971447|G/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	640.8906860351562	2	640.887978	1279.7614	-0.17161	-0.00010998	3.2681	0.0020945	3.0965	0.0019845	640.8899625944715	132.12	1.093	131	130.64	131.73	-1.1249					68	21	4	0	0	0	0.72459	1	10569	10569		20.947	0	1	271940			32873	32966	27053	27078	36243	36243					0.13271295952586115
LLVLFVGASR	10	Unmodified	_LLVLFVGASR_					0	0	0		ENST00000542103.5_2_22:19435325-19435376:-|nuORF	ENST00000542103.5_2_22:19435325-19435376:-|nuORF	ENST00000542103.5_2_22:19435325-19435376:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.3082885742188	2	537.837134	1073.65972	-1.8798	-0.001011	1.6729	0.00089977	-0.20687	-0.00011126	537.83773759178	67.792	0.98579	65.131	64.892	65.878	-2.661					45	19	3	0	0	0	0.026553	1	5399	5399		47.657	9.8458	1	56133			32874	13474	27054	27079	36244	36244					0.12583185645030426
LLVLFVGASR	10	Unmodified	_LLVLFVGASR_					0	0	0		ENST00000542103.5_2_22:19435325-19435376:-|nuORF	ENST00000542103.5_2_22:19435325-19435376:-|nuORF	ENST00000542103.5_2_22:19435325-19435376:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	537.837134	1073.65972	1.8843	0.0010135	-2.3827	-0.0012815	-0.49833	-0.00026802	537.8356746111737	68.051	0.64906	65.164	64.99	65.639	-2.8873	-0.031585	-0.0031494	NaN	47.657	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14965			32875	13474	27054	27079							0.12583185645030426
LLVLHLSLASA	11	Unmodified	_LLVLHLSLASA_					0	0	0		ADCY8|p.L416Ffs*74|1|0.12|ENSG00000155897|chr8:130943458-130943458|G/-|frameshift_variant;ADCY8|p.K765Vfs*29|1|0.39|ENSG00000155897|chr8:130849718-130849721|ATTT/-|frameshift_variant;ADCY8|p.D967Tfs*17|1|0.04|ENSG00000155897|chr8:130814083-130814083|C/-|frameshift_variant;ENSG00000155897|ENST00000286355|ADCY8	ADCY8|p.L416Ffs*74|1|0.12|ENSG00000155897|chr8:130943458-130943458|G/-|frameshift_variant	ADCY8|p.L416Ffs*74|1|0.12|ENSG00000155897|chr8:130943458-130943458|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	568.8544921875	2	568.855524	1135.69649	-5.375	-0.0030576	2.0179	0.0011479	-3.3571	-0.0019097	568.8565433281535	160.72	1.3933	160.5	160.18	161.57	-0.22696					89	27	5	0	0	0	0.72459	1	16432	16432		20.947	1.587	1	747650			32876	36	27055	27080	36245	36245					0.1340743747093711
LLVLILTPS	9	Unmodified	_LLVLILTPS_					0	0	0		ENSG00000244476|ENST00000472091|ERVFRD-1	ENSG00000244476|ENST00000472091|ERVFRD-1	ENSG00000244476|ENST00000472091|ERVFRD-1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.8271484375	2	484.823161	967.631769	-0.22613	-0.00010963	-2.5147	-0.0012192	-2.7408	-0.0013288	484.82191850797034	74.645	0.82047	71.414	71.24	72.061	-3.2308					36	16	3	0	0	0	0.027441	1	5836	5836		33.516	6.7195	1	112830			32877	9398	27056	27081	36246	36246					0.14665862664946872
LLVLKMIFMN	10	Unmodified	_LLVLKMIFMN_					0	0	0		ENSG00000187510|ENST00000344636|PLEKHG7	ENSG00000187510|ENST00000344636|PLEKHG7	ENSG00000187510|ENST00000344636|PLEKHG7	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3548583984375	2	611.358531	1220.70251	-3.1571	-0.0019301	-0.83397	-0.00050986	-3.9911	-0.00244	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.71192	1	12669	12669		29.15	4.6304	1	666990			32878	8405	27057	27082	36247	36247					0.10098496386626721
LLVLLLLID	9	Unmodified	_LLVLLLLID_					0	0	0		ENSG00000139574|ENST00000267017|NPFF	ENSG00000139574|ENST00000267017|NPFF	ENSG00000139574|ENST00000267017|NPFF	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.255859375	2	512.854461	1023.69437	2.5791	0.0013227	-3.2761	-0.0016801	-0.69701	-0.00035747	512.8527379197342	86.67	0.45669	86.67	86.431	86.888	0					15	10	2	0	0	0	0.027462	1	9164	9164		44.531	9.3304	1	320620			32879	4784	27058	27083	36248	36248					0.1834700873314432
LLVLMRIIV	9	Unmodified	_LLVLMRIIV_					0	0	0			REV__ENSG00000206077|ENST00000508859|ZDHHC11B	REV__ENSG00000206077|ENST00000508859|ZDHHC11B	MULTI-MSMS	OvCa99_classI_Rep5	1	535.3605346679688	2	535.36193	1068.70931	1.0251	0.0005488	-1.827	-0.00097809	-0.80187	-0.00042929	535.3607315495724	154.29	1.0933	154.29	153.98	155.07	0					41	21	3	0	0	0	0.57242	1	18097	18097		35.201	8.4046	1	145240	+		32880	23234	27059	27084	36249	36249					0.177701773294757
LLVLPPRLL	9	Unmodified	_LLVLPPRLL_					0	0	0		ENST00000519574.1_1_2:219125758-219128073:+|nuORF	ENST00000519574.1_1_2:219125758-219128073:+|nuORF	ENST00000519574.1_1_2:219125758-219128073:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3600463867188	2	517.360245	1032.70594	0.038556	1.9947E-05	-0.44941	-0.00023251	-0.41085	-0.00021256	517.3599133873521	135.24	1.9126	135.01	134.59	136.5	-0.22696					104	38	4	0	0	0	0.32337	2	13432	13426;13432		60.294	2.4827	1	602160			32881	13088	27060	27085	36250;36251	36251					0.1908925054710835
LLVLPVQSPAN	11	Unmodified	_LLVLPVQSPAN_					0	0	0			REV__ENSG00000104613|ENST00000397977|INTS10	REV__ENSG00000104613|ENST00000397977|INTS10	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8426513671875	2	575.845156	1149.67576	-2.8608	-0.0016474	-0.58729	-0.00033819	-3.4481	-0.0019856	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.69081	2	14576	14452;14576		32.812	2.6225	1	356230	+		32882	17671	27061	27086	36252;36253	36253					0.10690847091291289
LLVLPVQSPAN	11	Unmodified	_LLVLPVQSPAN_					0	0	0			REV__ENSG00000104613|ENST00000397977|INTS10	REV__ENSG00000104613|ENST00000397977|INTS10	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8429565429688	2	575.845156	1149.67576	-4.018	-0.0023138	0.54994	0.00031668	-3.4681	-0.0019971	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.61983	2	12113	12080;12113		42.864	18.345	1	445630	+		32883	17671	27061	27086	36254;36255	36255					0.10690847091291289
LLVLRLPCL	9	Unmodified	_LLVLRLPCL_					0	0	0			REV__ENSG00000133597|ENST00000072869|ADCK2	REV__ENSG00000133597|ENST00000072869|ADCK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.8221435546875	2	520.338455	1038.66236	0.93885	0.00048852	3.2197	0.0016753	4.1585	0.0021638	520.3402116545433	133.14	0.18327	133.14	132.99	133.17	0					5	3	2	0	0	0	0.027462	1	15470	15470		12.959	9.8	1	138210	+		32884	19149	27062	27087	36256	36256					0.14457317778328616
LLVLSVNSSVF	11	Unmodified	_LLVLSVNSSVF_					0	0	0		nc|ENSG00000106991|P17813-2|ENG;ENSG00000106991|ENST00000373203|ENG;ENG|p.T361Kfs*8|1|0.13|ENSG00000106991|chr9:127824356-127824356|G/-|frameshift_variant;ENST00000462196.1_1_9:130588871-130592043:-|nuORF	nc|ENSG00000106991|P17813-2|ENG	nc|ENSG00000106991|P17813-2|ENG	MULTI-MSMS	OvCa9_classI_Rep2	2	589.34326171875	2	589.344989	1176.67542	-3.0463	-0.0017953	-0.38122	-0.00022467	-3.4276	-0.00202	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.70865	2	15089	14817;15089		26.693	3.6504	1	272220			32885	2580	27063	27088	36257;36258	36258					0.09415427371413898
LLVLSVNSSVF	11	Unmodified	_LLVLSVNSSVF_					0	0	0		nc|ENSG00000106991|P17813-2|ENG;ENSG00000106991|ENST00000373203|ENG;ENG|p.T361Kfs*8|1|0.13|ENSG00000106991|chr9:127824356-127824356|G/-|frameshift_variant;ENST00000462196.1_1_9:130588871-130592043:-|nuORF	nc|ENSG00000106991|P17813-2|ENG	nc|ENSG00000106991|P17813-2|ENG	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3433227539062	2	589.344989	1176.67542	-5.1334	-0.0030254	1.6192	0.00095427	-3.5142	-0.0020711	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.71498	1	12534	12534		24.519	5.4157	1	589610			32886	2580	27063	27088	36259	36259					0.09415427371413898
LLVLVNVLVIC	11	Unmodified	_LLVLVNVLVIC_					0	0	0		ENSG00000017483|ENST00000620913|SLC38A5;nc|ENSG00000017483|Q8WUX1-2|SLC38A5	ENSG00000017483|ENST00000620913|SLC38A5	ENSG00000017483|ENST00000620913|SLC38A5	MULTI-MSMS	OvCa9_classI_Rep2	2	599.3817138671875	2	599.385603	1196.75665	-5.4324	-0.0032561	-0.42616	-0.00025544	-5.8586	-0.0035115	599.3852480271133	162.79	0.32999	162.57	162.31	162.64	-0.22696					11	6	2	0	0	0	0.68263	1	16586	16586		35.618	1.4457	1	1076100			32887	1009	27064	27089	36260	36260					0.16614411809814555
LLVLVNVLVIC	11	Unmodified	_LLVLVNVLVIC_					0	0	0		ENSG00000017483|ENST00000620913|SLC38A5;nc|ENSG00000017483|Q8WUX1-2|SLC38A5	ENSG00000017483|ENST00000620913|SLC38A5	ENSG00000017483|ENST00000620913|SLC38A5	MULTI-MSMS	OvCa9_classI_Rep3	3	599.3827514648438	2	599.385603	1196.75665	-5.1251	-0.0030719	-3.2504	-0.0019482	-8.3755	-0.0050201	599.3837594263146	163.98	0.39844	162.59	162.3	162.69	-1.3925					19	8	3	0	0	0	0.70148	1	14313	14313		29.15	3.0862	1	1825400			32888	1009	27064	27089	36261	36261					0.16614411809814555
LLVLVNVLVIC	11	Unmodified	_LLVLVNVLVIC_					0	0	0		ENSG00000017483|ENST00000620913|SLC38A5;nc|ENSG00000017483|Q8WUX1-2|SLC38A5	ENSG00000017483|ENST00000620913|SLC38A5	ENSG00000017483|ENST00000620913|SLC38A5	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	599.385603	1196.75665	-5.9492	-0.0035659	-1.8941	-0.0011353	-7.8433	-0.0047012	599.3844944011306	164.14	0.27028	162.51	162.36	162.63	-1.6336	-0.047343	-0.00025853	NaN	35.618	17	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1190900			32889	1009	27064	27089							0.16614411809814555
LLVLYFASSLI	11	Unmodified	_LLVLYFASSLI_					0	0	0		nc|ENSG00000162692|P19320-2|VCAM1;ENST00000603679.1_1_1:101203653-101203836:+|nuORF;nc|ENSG00000162692|P19320-3|VCAM1;ENSG00000162692|ENST00000294728|VCAM1	nc|ENSG00000162692|P19320-2|VCAM1	nc|ENSG00000162692|P19320-2|VCAM1	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8694458007812	2	619.873382	1237.73221	-1.8761	-0.001163	-4.4777	-0.0027756	-6.3538	-0.0039386	619.8704234308321	147.79	3.8764	146.35	144.25	148.12	-1.4351					189	77	4	0	0	0	0.70865	1	14668	14668		26.693	3.1702	1	269210			32890	15133	27065	27090	36262	36262					0.12285474927966789
LLVMAYCYAHI	11	Unmodified	_LLVMAYCYAHI_					0	0	0		ENSG00000186810|ENST00000373693|CXCR3;nc|ENSG00000186810|P49682-2|CXCR3	ENSG00000186810|ENST00000373693|CXCR3	ENSG00000186810|ENST00000373693|CXCR3	MULTI-MSMS	OvCa99_classI_Rep5	1	648.8274536132812	2	648.827595	1295.64064	1.4347	0.00093086	-1.1766	-0.00076341	0.25808	0.00016745	648.8265129501508	143.74	1.1388	143.74	143.17	144.31	0					47	22	3	0	0	0	0.17533	1	16797	16797		83.287	0.5367	1	352200			32891	8363	27066	27091	36263	36263					0.004641449674636533
LLVNLRAM	8	Unmodified	_LLVNLRAM_					0	0	0		SATB1|p.N758Ifs*4|1|0.11|ENSG00000182568|chr3:18349189-18349189|T/-|frameshift_variant;ENSG00000182568|ENST00000338745|SATB1;nc|ENSG00000182568|Q01826-2|SATB1;nc|ENSG00000119042|Q9UPW6-2|SATB2;ENSG00000119042|ENST00000417098|SATB2	SATB1|p.N758Ifs*4|1|0.11|ENSG00000182568|chr3:18349189-18349189|T/-|frameshift_variant	SATB1|p.N758Ifs*4|1|0.11|ENSG00000182568|chr3:18349189-18349189|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.286376953125	2	465.28368	928.552807	-0.22765	-0.00010592	4.308	0.0020044	4.0803	0.0018985	465.2855847072139	143.15	1.5248	141.71	141.35	142.88	-1.4427					87	29	5	0	0	0	0.69415	2	14046	14032;14046		44.531	14.027	1	628240			32892	8008	27067	27092	36264;36265	36265					0.08567312159016183
LLVPALAL	8	Unmodified	_LLVPALAL_					0	0	0		ENSG00000188820|ENST00000368605|CALHM6	ENSG00000188820|ENST00000368605|CALHM6	ENSG00000188820|ENST00000368605|CALHM6	MULTI-MSMS	OvCa99_classI_Rep5	1	405.279541015625	2	405.278389	808.542226	1.7928	0.00072657	-0.96277	-0.00039019	0.82999	0.00033638	405.27799811906704	161.03	2.9084	161.03	159.62	162.53	0					81	57	2	0	0	0	0.69862	1	18896	18896		43.626	0	1	75161			32893	8507	27068	27093	36266	36266					0.1302965277621979
LLVPFGVLH	9	Unmodified	_LLVPFGVLH_					0	0	0			REV__ENSG00000277481|ENST00000620267|PKD1L3	REV__ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.8074645996094	2	497.807845	993.601138	1.7447	0.00086853	-1.7297	-0.00086105	0.015021	7.4776E-06	497.8066924048466	129.8	0.79239	128.34	128.09	128.88	-1.4565					25	15	2	0	0	0	0.68641	1	12445	12445		21.702	1.7056	1	42227	+		32894	23634	27069	27094	36267	36267					0.10408129070572159
LLVPFGVLH	9	Unmodified	_LLVPFGVLH_					0	0	0			REV__ENSG00000277481|ENST00000620267|PKD1L3	REV__ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	497.807845	993.601138	1.1021	0.00054862	-1.1612	-0.00057805	-0.059108	-2.9424E-05	497.8070857000459	128.57	0.74271	128.34	128.03	128.77	-0.22696	-0.0058579	-0.00041112	NaN	21.702	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34956	+		32895	23634	27069	27094							0.10408129070572159
LLVPFGVLH	9	Unmodified	_LLVPFGVLH_					0	0	0			REV__ENSG00000277481|ENST00000620267|PKD1L3	REV__ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	497.807845	993.601138	0.38523	0.00019177	-0.21531	-0.00010718	0.16992	8.4587E-05	497.80762799606094	129.48	0.69263	128.36	128.24	128.93	-1.1121	0.014367	0.00053061	NaN	21.702	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28349	+		32896	23634	27069	27094							0.10408129070572159
LLVPFGVLH	9	Unmodified	_LLVPFGVLH_					0	0	0			REV__ENSG00000277481|ENST00000620267|PKD1L3	REV__ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	497.807845	993.601138	1.7447	0.00086853	-1.7297	-0.00086105	0.015021	7.4776E-06	497.8066924048466	129.8	0.79239	128.34	128.09	128.88	-1.4565	-0.008509	-0.00097713	NaN	21.702	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42227	+		32897	23634	27069	27094							0.10408129070572159
LLVPFGVLHT	10	Unmodified	_LLVPFGVLHT_					0	0	0			REV__ENSG00000277481|ENST00000620267|PKD1L3	REV__ENSG00000277481|ENST00000620267|PKD1L3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.3037109375	2	548.331685	1094.64882	3.8377	0.0021043	-3.0722	-0.0016846	0.76552	0.00041976	548.3301624384957	131.73	0.81949	130.23	129.98	130.8	-1.5014					21	15	2	0	0	0	0.026982	1	12658	12658		38.806	1.647	1	13117	+		32898	23634	27070	27095	36268	36268					0.10527783270754298
LLVPFGVLHT	10	Unmodified	_LLVPFGVLHT_					0	0	0			REV__ENSG00000277481|ENST00000620267|PKD1L3	REV__ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	548.331685	1094.64882	1.1059	0.0006064	-0.30464	-0.00016704	0.80127	0.00043936	548.3313591090522	130.16	0.34534	129.93	129.66	130.01	-0.22696	-0.1488	0.0012689	NaN	38.806	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18417	+		32899	23634	27070	27095							0.10527783270754298
LLVPHQLRHV	10	Unmodified	_LLVPHQLRHV_					0	0	0			REV__nc|ENSG00000179241|Q86YD5-2|LDLRAD3	REV__nc|ENSG00000179241|Q86YD5-2|LDLRAD3	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3700561523438	2	606.372207	1210.72986	-3.14	-0.001904	-1.1627	-0.00070505	-4.3027	-0.0026091	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.7759	1	14823	14823		21.96	0.27414	1	257720	+		32900	22112	27071	27096	36269	36269					0.132924840334681
LLVPLFSSE	9	Unmodified	_LLVPLFSSE_					0	0	0		ENST00000257963.8_1_12:52388547-52388796:+|nuORF	ENST00000257963.8_1_12:52388547-52388796:+|nuORF	ENST00000257963.8_1_12:52388547-52388796:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.7831115722656	2	502.786776	1003.559	1.1859	0.00059624	0.86295	0.00043388	2.0488	0.0010301	502.7873901691173	144.57	0.43427	144.57	144.4	144.84	0					11	8	2	0	0	0	0.027462	1	16887	16887		24.203	0	1	42459			32901	9833	27072	27097	36270	36270					0.057361088715197184
LLVPQGEL	8	Unmodified	_LLVPQGEL_					0	0	0			REV__ENST00000507059.5_1_5:180043993-180056331:-|nuORF	REV__ENST00000507059.5_1_5:180043993-180056331:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	434.7593078613281	2	434.760561	867.506569	-0.54476	-0.00023684	-2.3576	-0.001025	-2.9023	-0.0012618	434.7594502813862	138.35	2.0585	138.12	137.54	139.6	-0.22697					104	41	4	0	0	0	0.73626	1	13820	13820		33.516	1.5607	1	279250	+		32902	16611	27073	27098	36271	36271					0.06751570528570028
LLVPQSELL	9	Unmodified	_LLVPQSELL_					0	0	0			REV__FLT4|p.G571S|1|0.51|ENSG00000037280|chr5:180621851-180621851|C/T|missense_variant	REV__FLT4|p.G571S|1|0.51|ENSG00000037280|chr5:180621851-180621851|C/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.7809143066406	2	506.307875	1010.6012	2.0628	0.0010444	0.31514	0.00015956	2.3779	0.001204	506.3078702259305	99.909	0.49902	99.909	99.694	100.19	0					18	11	2	0	0	0	0.027447	1	11047	11047		39.253	12.56	1	302260	+		32903	28139	27074	27099	36272	36272					0.09632084279917308
LLVPRRYG	8	Unmodified	_LLVPRRYG_					0	0	0			REV__ENSG00000138801|ENST00000265174|PAPSS1	REV__ENSG00000138801|ENST00000265174|PAPSS1	MULTI-MSMS	OvCa9_classI_Rep2	2	487.2979736328125	2	487.300719	972.586885	-2.0582	-0.0010029	-2.2412	-0.0010921	-4.2993	-0.0020951	487.29953188884207	145.86	1.1405	145.64	145.18	146.32	-0.22696					53	22	3	0	0	0	0.74679	1	14699	14699		28.254	0	1	104880	+		32904	19576	27075	27100	36273	36273					0.09949476642270838
LLVPVFIYVE	10	Unmodified	_LLVPVFIYVE_					0	0	0		tr|A0A7D6ZUJ8|A0A7D6ZUJ8_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_00395PE=4SV=1	tr|A0A7D6ZUJ8|A0A7D6ZUJ8_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_00395PE=4SV=1	tr|A0A7D6ZUJ8|A0A7D6ZUJ8_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_00395PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	597.328857421875	2	596.354825	1190.6951	0.0065394	3.8998E-06	-3.7256	-0.0022218	-3.7191	-0.0022179	596.3523860554534	99.095	0.83001	96.769	96.536	97.366	-2.3253					36	15	3	0	0	0	0.027117	1	8861	8861		23.042	10.836	1	109250			32905	35775	27076	27101	36274	36274					0.10737803382198763
LLVQGEEEV	9	Unmodified	_LLVQGEEEV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.P12974Lfs*4|1|0.05|ENSG00000155657|chr2:178631204-178631205|-/GTACA|frameshift_variant;TTN|p.E11597Rfs*5|1|0.5|ENSG00000155657|chr2:178651954-178651954|A/-|frameshift_variant;TTN|p.R11195Efs*5|1|0.15|ENSG00000155657|chr2:178674318-178674318|A/-|frameshift_variant;TTN|p.E9011Nfs*14|1|0.03|ENSG00000155657|chr2:178711255-178711255|T/-|frameshift_variant;TTN|p.G8550Tfs*3|1|0.05|ENSG00000155657|chr2:178714032-178714059|ATTTGTTGTCACTTGTTAGCTCTTTTCC/-|frameshift_variant;TTN|p.S7694Qfs*32|1|0.04|ENSG00000155657|chr2:178719360-178719360|G/-|frameshift_variant;TTN|p.C7689Pfs*18|1|0.03|ENSG00000155657|chr2:178719373-178719374|CA/-|frameshift_variant;TTN|p.L7641Yfs*6|1|0.07|ENSG00000155657|chr2:178719621-178719621|T/-|frameshift_variant;TTN|p.T6904Lfs*6|1|0.08|ENSG00000155657|chr2:178723439-178723439|T/-|frameshift_variant;TTN|p.V5150Afs*3|1|0.06|ENSG00000155657|chr2:178732661-178732661|A/-|frameshift_variant;TTN|p.R4157*|1|0.07|ENSG00000155657|chr2:178739814-178739815|-/C|frameshift_variant;TTN|p.E3802Dfs*59|1|0.05|ENSG00000155657|chr2:178740876-178740877|-/GAAGTAACAAGGTACATGCACATGATGTG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN;TTN|p.L3483Ifs*33|1|0.11|ENSG00000155657|chr2:178741835-178741836|-/AT|frameshift_variant;TTN|p.L962Efs*29|1|0.14|ENSG00000155657|chr2:178783023-178783024|-/AACCTCA|frameshift_variant;TTN|p.T961Ifs*17|1|0.06|ENSG00000155657|chr2:178783024-178783025|-/AAGTTTAA|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.802490234375	2	508.268947	1014.52334	0.0045063	2.2904E-06	1.1799	0.00059971	1.1844	0.000602	508.2694616356093	60.794	0.59725	60.794	60.559	61.156	0					20	13	2	0	0	0	0.027462	1	5298	5298		38.806	1.647	1	640990			32906	5793;36288	27077	27102	36275	36275					0.01666026623865946
LLVQHEVL	8	Unmodified	_LLVQHEVL_					0	0	0		HIPK3|p.Q183L|1|0.04|ENSG00000110422|chr11:33286962-33286962|A/T|missense_variant	HIPK3|p.Q183L|1|0.04|ENSG00000110422|chr11:33286962-33286962|A/T|missense_variant	HIPK3|p.Q183L|1|0.04|ENSG00000110422|chr11:33286962-33286962|A/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	475.7873229980469	2	475.78711	949.559667	-1.1284	-0.0005369	1.2052	0.00057342	0.07677	3.6526E-05	475.7874490810867	140.15	0.93607	139.11	138.74	139.68	-1.0339					36	18	3	0	0	0	0.73938	1	11527	11527		31.955	2.1133	1	94016			32907	14483	27078	27103	36276	36276					0.08286948311229025
LLVQIRKAR	9	Unmodified	_LLVQIRKAR_					0	0	0		DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.F3496Wfs*92|1|0.14|ENSG00000197102|chr14:102034043-102034044|-/GACCTGGCAGCTGTCGAGGC|frameshift_variant;DYNC1H1|p.P2596Tfs*19|1|0.06|ENSG00000197102|chr14:102016936-102016937|-/A|frameshift_variant;DYNC1H1|p.E1316*|1|0.12|ENSG00000197102|chr14:102000128-102000129|-/C|frameshift_variant;DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.3670654296875	2	548.8693	1095.72405	0.30023	0.00016479	-3.2634	-0.0017912	-2.9631	-0.0016264	548.8674328222497	68.433	1.5186	64.943	64.284	65.802	-3.4902					67	30	3	0	0	0	0.027456	1	5104	5104		38.806	8.3025	1	246210			32908	767;768	27079	27104	36277	36277					0.18001385521824886
LLVQKQATV	9	Unmodified	_LLVQKQATV_					0	0	0			REV__ENSG00000173546|ENST00000308508|CSPG4	REV__ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OvCa9_classI_Rep3	3	500.3128356933594	2	500.313492	998.612431	0.37155	0.00018589	-0.7555	-0.00037799	-0.38395	-0.00019209	500.31302313941114	128.99	2.6573	127.9	127.57	130.22	-1.0933					135	53	5	0	0	0	0.6653	1	10316	10316		24.203	2.2429	1	747300	+		32909	21782	27080	27105	36278	36278					0.11306906374045411
LLVQLEEL	8	Unmodified	_LLVQLEEL_					0	0	0			REV__tr|A0A553SNE3|A0A553SNE3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24300PE=4SV=1	REV__tr|A0A553SNE3|A0A553SNE3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24300PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	478.7855224609375	2	478.786776	955.558998	-2.4635	-0.0011795	-0.48004	-0.00022984	-2.9436	-0.0014093	478.7864521794397	145.79	1.5385	145.57	144.98	146.52	-0.22696					81	30	4	0	0	0	0.73938	1	14714	14714		31.955	1.4512	1	230950	+		32910	30413	27081	27106	36279	36279					0.0794410887151571
LLVQLMAPNN	10	Oxidation (M)	_LLVQLM(Oxidation (M))APNN_		LLVQLM(1)APNN		LLVQLM(61)APNN	0	0	1			REV__nc|ENSG00000162437|Q9HCJ3-2|RAVER2	REV__nc|ENSG00000162437|Q9HCJ3-2|RAVER2	MULTI-MSMS	OvCa99_classI_Rep5	1	564.8093872070312	2	564.807716	1127.60088	1.5116	0.00085375	3.2499	0.0018356	4.7615	0.0026893	564.8094698875842	150.18	1.7096	150.18	149.79	151.5	0					106	33	6	0	0	0	0.45225	1	17629	17629		60.972	6.1956	1	1051000	+		32911	20736	27082	27107	36280	36280		485			0.04218341288378724
LLVQLPAP	8	Unmodified	_LLVQLPAP_					0	0	0			REV__ENSG00000184933|ENST00000641196|OR6A2	REV__ENSG00000184933|ENST00000641196|OR6A2	MULTI-MSMS	OvCa9_classI_Rep2	2	425.77508544921875	2	425.773471	849.53239	0.35721	0.00015209	2.8578	0.0012168	3.215	0.0013689	425.77457093952984	70.919	1.9242	68.349	67.916	69.84	-2.5707					106	36	5	0	0	0	0.74361	2	5685	5685;5697		29.842	1.5873	1	1515700	+		32912	22460	27083	27108	36281;36282	36281					0.10160464770842736
LLVQLPLSLV	10	Unmodified	_LLVQLPLSLV_					0	0	0		nc|ENSG00000053900|Q9UJX5-3|ANAPC4;ENSG00000053900|ENST00000315368|ANAPC4	nc|ENSG00000053900|Q9UJX5-3|ANAPC4	nc|ENSG00000053900|Q9UJX5-3|ANAPC4	MULTI-SECPEP	OvCa9_classI_Rep3	3	547.84228515625	2	547.862818	1093.71108	-0.16414	-8.9929E-05	-3.2896	-0.0018022	-3.4537	-0.0018922	547.862125658204	71.62	0.49747	69.018	68.732	69.23	-2.6023					13	9	2	0	0	0	0.026982	1	3347	3347		16.473	1.6083	1	13440			32913	1202	27084	27109	36283	36283					0.16797509619073026
LLVRAVEVH	9	Unmodified	_LLVRAVEVH_					0	0	0			REV__ENSG00000131503|ENST00000360839|ANKHD1	REV__ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.31640625	2	518.319109	1034.62366	-5.7075	-0.0029583	1.7939	0.00092982	-3.9136	-0.0020285	518.3198123287025	157.44	0.57962	155.9	155.73	156.31	-1.545					28	12	3	0	0	0	0.61208	1	15565	15565		30.504	8.5438	1	39163	+		32914	19019	27085	27110	36284	36284					0.10773728468188892
LLVRAVEVH	9	Unmodified	_LLVRAVEVH_					0	0	0			REV__ENSG00000131503|ENST00000360839|ANKHD1	REV__ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	518.319109	1034.62366	-5.6891	-0.0029488	1.64	0.00085002	-4.0492	-0.0020988	518.3198314838487	157.08	0.41216	155.91	155.71	156.12	-1.1707	0.0064609	-9.5298E-05	NaN	30.504	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14673	+		32915	19019	27085	27110							0.10773728468188892
LLVRAVEVH	9	Unmodified	_LLVRAVEVH_					0	0	0			REV__ENSG00000131503|ENST00000360839|ANKHD1	REV__ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	518.319109	1034.62366	-5.7075	-0.0029583	1.7939	0.00092982	-3.9136	-0.0020285	518.3198123287025	157.44	0.57962	155.9	155.73	156.31	-1.545	-0.0064609	6.4306E-05	NaN	30.504	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39163	+		32916	19019	27085	27110							0.10773728468188892
LLVRDAHFKG	10	Unmodified	_LLVRDAHFKG_					0	0	0		ENST00000427980.6_1_16:71886177-71886237:+|nuORF	ENST00000427980.6_1_16:71886177-71886237:+|nuORF	ENST00000427980.6_1_16:71886177-71886237:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	578.8388061523438	2	578.33529	1154.65603	-0.25707	-0.00014867	2.4623	0.001424	2.2052	0.0012754	578.8380818909437	31.382	0.97832	31.382	31.027	32.006	0					69	19	5	0	0	0	0.64697	1	1295	1295		36.447	3.6962	1	1273200			32917	11765	27086	27111	36285	36285					0.08488515871158597
LLVRDAKTF	9	Unmodified	_LLVRDAKTF_					0	0	0			REV__nc|ENSG00000138448|P06756-3|ITGAV	REV__nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	OvCa9_classI_Rep3	3	531.817138671875	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.59259	1	11528	11528		32.812	2.4947	1	178650	+		32918	19540	27087	27112	36286	36286					0.09498308748311501
LLVRDTFFI	9	Unmodified	_LLVRDTFFI_					0	0	0			REV__ENST00000550329.1_1_12:51401937-51404511:-|nuORF	REV__ENST00000550329.1_1_12:51401937-51404511:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	562.3282470703125	2	562.329142	1122.64373	1.5423	0.00086728	0.36667	0.00020619	1.909	0.0010735	562.329254298129	123.76	0.67877	123.76	123.51	124.19	0					29	14	3	0	0	0	0.24951	1	14302	14302		68.787	8.4929	1	226680	+		32919	27471	27088	27113	36287	36287					0.08731479408129417
LLVRGPLAL	9	Unmodified	_LLVRGPLAL_					0	0	0			REV__ENSG00000166289|ENST00000436066|PLEKHF1	REV__ENSG00000166289|ENST00000436066|PLEKHF1	MULTI-MSMS	OvCa9_classI_Rep3	3	476.3211975097656	2	476.32112	950.627687	0.74261	0.00035372	-1.088	-0.00051824	-0.34539	-0.00016452	476.3205127768248	109.82	1.8658	108.67	108.24	110.11	-1.1444					108	35	5	0	0	0	0.34496	1	7963	7963		57.811	0	1	1722500	+		32920	21173	27089	27114	36288	36288					0.15039817961883273
LLVRGPSVF	9	Unmodified	_LLVRGPSVF_					0	0	0		ENST00000562204.1_1_16:89178629-89212354:+|nuORF;ENSG00000176715|ENST00000614302|ACSF3	ENST00000562204.1_1_16:89178629-89212354:+|nuORF	ENST00000562204.1_1_16:89178629-89212354:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	494.30126953125	2	494.302927	986.591301	-5.5844	-0.0027604	1.3123	0.0006487	-4.2721	-0.0021117	494.3034903870968	153.96	1.4815	152.95	152.62	154.1	-1.0076					78	30	5	0	0	0	0.65476	1	13210	13210		25.45	0	1	602630			32921	7625	27090	27115	36289	36289					0.09746941065191095
LLVRGPSVF	9	Unmodified	_LLVRGPSVF_					0	0	0		ENST00000562204.1_1_16:89178629-89212354:+|nuORF;ENSG00000176715|ENST00000614302|ACSF3	ENST00000562204.1_1_16:89178629-89212354:+|nuORF	ENST00000562204.1_1_16:89178629-89212354:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.30133056640625	2	494.302927	986.591301	-4.1633	-0.0020579	-0.17175	-8.4898E-05	-4.3351	-0.0021428	494.3027151933939	154.42	1.2699	152.97	152.67	153.94	-1.4516					88	32	5	0	0	0	0.52083	3	15281	15281;15292;15305		40.573	16.37	1	484960			32922	7625	27090	27115	36290;36291;36292	36290					0.09746941065191095
LLVRGVIP	8	Unmodified	_LLVRGVIP_					0	0	0		ENST00000577783.2_1_17:77079170-77080166:+|nuORF;ENST00000300682.14_2_17:77078803-77082428:+|nuORF;ENSG00000167280|ENST00000579016|ENGASE	ENST00000577783.2_1_17:77079170-77080166:+|nuORF	ENST00000577783.2_1_17:77079170-77080166:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	433.7547302246094	2	433.794738	865.574923	0.44891	0.00019473	1.5607	0.00067704	2.0097	0.00087178	433.7953932462054	101.84	0.38911	101.84	101.61	102	0					13	8	2	0	0	0	0.028476	1	11305	11305		14.664	0	1	159200			32923	13961	27091	27116	36293	36293					0.13675859899092302
LLVRIGAM	8	Unmodified	_LLVRIGAM_					0	0	0		ENST00000525966.1_1_11:14695245-14695548:-|nuORF	ENST00000525966.1_1_11:14695245-14695548:-|nuORF	ENST00000525966.1_1_11:14695245-14695548:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	436.77642822265625	2	436.772948	871.531344	2.2926	0.0010014	3.8683	0.0016896	6.1609	0.0026909	436.7745476542465	147.72	0.47997	147.72	147.55	148.03	0					15	9	2	0	0	0	0.69415	1	17290	17290		44.531	14.69	1	50853			32924	13204	27092	27117	36294	36294					0.09043927130301199
LLVRKKYD	8	Unmodified	_LLVRKKYD_					0	0	0			REV__HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|246|2|anti-sense	REV__HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|246|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.8191528320312	2	517.821484	1033.62842	-1.9356	-0.0010023	-2.1747	-0.0011261	-4.1103	-0.0021284	517.8202333199824	147.34	1.4932	145.91	145.48	146.98	-1.435					65	29	3	0	0	0	0.74229	1	14531	14531		30.504	0	1	151000	+		32925	28271	27093	27118	36295	36295					0.1129461261095912
LLVRLAPL	8	Unmodified	_LLVRLAPL_					0	0	0			REV__ENST00000264094.7_1_2:74779660-74781057:-|nuORF	REV__ENST00000264094.7_1_2:74779660-74781057:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	447.81060791015625	2	447.810388	893.606223	2.7892	0.001249	-2.8374	-0.0012706	-0.048227	-2.1597E-05	447.80901078809313	136.31	1.365	134.77	134.4	135.76	-1.5437					55	27	3	0	0	0	0.74679	1	13236	13236		28.254	1.4582	1	73419	+		32926	24012	27094	27119	36296	36296					0.1551643293316829
LLVRLLLVL	9	Unmodified	_LLVRLLLVL_					0	0	0			REV__ENST00000378944.9_1_19:36276198-36277438:+|nuORF	REV__ENST00000378944.9_1_19:36276198-36277438:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	526.3851928710938	2	526.38372	1050.75289	0.8396	0.00044195	1.0522	0.00055387	1.8918	0.00099582	526.3841229635275	155.77	3.4661	155.77	154.72	158.19	0					132	68	3	0	0	0	0.53957	1	18255	18255		38.806	0	1	97397	+		32927	25149	27095	27120	36297	36297					0.22954110098271485
LLVRLSSQA	9	Unmodified	_LLVRLSSQA_					0	0	0		HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|51|1|sense	HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|51|1|sense	HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|51|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.78106689453125	2	493.803291	985.59203	0.24987	0.00012339	-0.69567	-0.00034352	-0.4458	-0.00022014	493.8028882312918	64.868	1.7474	61.382	60.529	62.276	-3.4854					53	35	2	0	0	0	0.027462	1	4747	4747		27.882	0	1	226870			32928	14431	27096	27121	36298	36298					0.09865735714242874
LLVRPANI	8	Unmodified	_LLVRPANI_					0	0	0			REV__ENST00000314888.9_1_9:35697397-35697580:-|nuORF	REV__ENST00000314888.9_1_9:35697397-35697580:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	448.2911071777344	2	448.28982	894.565087	1.8734	0.00083983	0.37744	0.0001692	2.2509	0.001009	448.2898368441207	111.63	0.77699	111.63	111.33	112.11	0					39	16	3	0	0	0	0.64377	1	12710	12710		54.765	2.4655	1	464400	+		32929	24387	27097	27122	36299	36299					0.1135867189370856
LLVSAPDVPQ	10	Unmodified	_LLVSAPDVPQ_					0	0	0			REV__ENSG00000124788|ENST00000436367|ATXN1	REV__ENSG00000124788|ENST00000436367|ATXN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.7931518554688	2	519.795132	1037.57571	-0.39548	-0.00020557	-2.2434	-0.0011661	-2.6389	-0.0013717	519.7938318646319	121.84	4.0005	120.49	119.9	123.9	-1.3479					152	78	4	0	0	0	0.66721	1	11454	11454		34.173	0	1	769080	+		32930	18706	27098	27123	36300	36300					0.058426097574511004
LLVSHIAAIVL	11	Unmodified	_LLVSHIAAIVL_					0	0	0		TAS2R8|p.L146H|1|0.15|ENSG00000121314|chr12:10806544-10806544|A/T|missense_variant	TAS2R8|p.L146H|1|0.15|ENSG00000121314|chr12:10806544-10806544|A/T|missense_variant	TAS2R8|p.L146H|1|0.15|ENSG00000121314|chr12:10806544-10806544|A/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	574.835693359375	2	574.873717	1147.73288	0.97977	0.00056325	-3.5285	-0.0020284	-2.5487	-0.0014652	574.8713937609612	89.958	0.39706	88.656	88.433	88.83	-1.302					9	7	2	0	0	0	0.025444	1	7935	7935		49.442	3.4693	1	26150			32931	32945	27099	27124	36301	36301					0.16492314367633298
LLVSHVLLM	9	Unmodified	_LLVSHVLLM_					0	0	0		ENST00000330943.8_1_16:50706657-50706903:-|nuORF	ENST00000330943.8_1_16:50706657-50706903:-|nuORF	ENST00000330943.8_1_16:50706657-50706903:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	511.84393310546875	2	512.814813	1023.61507	-0.4278	-0.00021938	-0.207	-0.00010615	-0.6348	-0.00032553	512.8147437738521	98.745	0.54866	97.852	97.508	98.057	-0.89305					16	10	2	0	0	0	0.027462	1	8946	8946		24.203	4.8428	1	86761			32932	10442	27100	27125	36302	36302					0.10421038507354297
LLVSLRVL	8	Unmodified	_LLVSLRVL_					0	0	0		ENST00000579200.1_1_18:72775002-72776421:+|nuORF	ENST00000579200.1_1_18:72775002-72776421:+|nuORF	ENST00000579200.1_1_18:72775002-72776421:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.79718017578125	2	456.81567	911.616788	0.030097	1.3749E-05	-2.7515	-0.0012569	-2.7214	-0.0012432	456.8142591827421	105.39	0.39636	103.37	103.3	103.7	-2.0161					11	7	2	0	0	0	0.028476	1	9561	9561		71.296	0	1	11574			32933	13977	27101	27126	36303	36303					0.15744415587607818
LLVSSHPLTLA	11	Unmodified	_LLVSSHPLTLA_					0	0	0		ENST00000541786.5_2_12:118693425-118704478:-|nuORF	ENST00000541786.5_2_12:118693425-118704478:-|nuORF	ENST00000541786.5_2_12:118693425-118704478:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8435668945312	2	575.845156	1149.67576	-4.018	-0.0023138	0.54994	0.00031668	-3.4681	-0.0019971	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.72473	1	12024	12024		19.104	0.77911	1	445630			32934	13468	27102	27127	36304	36304					0.10690847091291289
LLVSTNLL	8	Unmodified	_LLVSTNLL_					0	0	0			REV__ENSG00000198938|ENST00000362079|MT-CO3	REV__ENSG00000198938|ENST00000362079|MT-CO3	MULTI-MSMS	OvCa9_classI_Rep2	2	436.7745056152344	2	436.776211	871.537869	-1.3218	-0.00057733	-1.7819	-0.0007783	-3.1037	-0.0013556	436.77534043072393	144.04	2.131	143.81	143.2	145.33	-0.22697					119	42	4	0	0	0	0.7549	1	14468	14468		24.203	0	1	537180	+		32935	23098	27103	27128	36305	36305					0.09696143562666748
LLVTGFASGIF	11	Unmodified	_LLVTGFASGIF_					0	0	0		ENSG00000241945|ENST00000291576|PWP2	ENSG00000241945|ENST00000291576|PWP2	ENSG00000241945|ENST00000291576|PWP2	MULTI-MSMS	OvCa99_classI_Rep5	1	562.8216552734375	2	562.82115	1123.62775	2.4153	0.0013594	0.30066	0.00016922	2.7159	0.0015286	562.8211562015002	137.88	0.56818	137.88	137.54	138.11	0					28	12	3	0	0	0	0.32727	1	16090	16090		66.429	2.222	1	191770			32936	9358	27104	27129	36306	36306					0.07087773171224399
LLVTLASHLPS	11	Unmodified	_LLVTLASHLPS_					0	0	0		CON__P01966	CON__P01966	CON__P01966	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8433227539062	2	575.845156	1149.67576	-2.8608	-0.0016474	-0.58729	-0.00033819	-3.4481	-0.0019856	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.69081	1	14534	14534		32.812	1.2826	1	356230		+	32937	615	27105	27130	36307	36307					0.10690847091291289
LLVTLRPLA	9	Unmodified	_LLVTLRPLA_					0	0	0		ENST00000430458.1_1_6:108616211-108666050:+|nuORF;ENSG00000135537|ENST00000368977|AFG1L	ENST00000430458.1_1_6:108616211-108666050:+|nuORF	ENST00000430458.1_1_6:108616211-108666050:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.333740234375	2	498.334227	994.653902	0.034655	1.727E-05	-0.51496	-0.00025662	-0.48031	-0.00023935	498.3339335091273	123.54	3.2541	123.31	122.99	126.25	-0.23193					175	65	5	0	0	0	0.61208	1	12119	12119		30.504	1.3541	1	3004600			32938	4387	27106	27131	36308	36308					0.15636087133373167
LLVTPITVE	9	Unmodified	_LLVTPITVE_					0	0	0		tr|A0A553SKG1|A0A553SKG1_NIACIU32familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_18715PE=4SV=1	tr|A0A553SKG1|A0A553SKG1_NIACIU32familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_18715PE=4SV=1	tr|A0A553SKG1|A0A553SKG1_NIACIU32familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_18715PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	492.8010559082031	2	492.802426	983.590298	-0.24793	-0.00012218	-2.814	-0.0013868	-3.062	-0.0015089	492.8009419082902	56.6	1.5858	53.796	53.175	54.761	-2.804					103	31	4	0	0	0	0.59983	1	4037	4037		31.955	0	1	477380			32939	33613	27107	27132	36309	36309					0.09784681905625803
LLVVALPRV	9	Unmodified	_LLVVALPRV_					0	0	0		ENSG00000160886|ENST00000292430|LY6K;nc|ENSG00000160886|Q17RY6-2|LY6K	ENSG00000160886|ENST00000292430|LY6K	ENSG00000160886|ENST00000292430|LY6K	MULTI-MSMS	OvCa9_classI_Rep2	2	490.3367919921875	2	490.33677	978.658987	0.31976	0.00015679	-1.1553	-0.00056648	-0.83553	-0.00040969	490.3362879264998	135.18	3.9777	134.96	134.64	138.62	-0.22697					225	81	5	0	0	0	0.6959	1	13601	13601		19.36	1.0356	1	7114000			32940	6101	27108	27133	36310	36310					0.16880390995981998
LLVVCIFLS	9	Unmodified	_LLVVCIFLS_					0	0	0			REV__SLC5A4|p.P348Mfs*18|1|0.33|ENSG00000100191|chr22:32231056-32231057|-/TGGATTGAATTAATGGAAGGTGCAAGAATTGCACCATA|frameshift_variant	REV__SLC5A4|p.P348Mfs*18|1|0.33|ENSG00000100191|chr22:32231056-32231057|-/TGGATTGAATTAATGGAAGGTGCAAGAATTGCACCATA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.3257141113281	2	503.803914	1005.59328	0.1256	6.3278E-05	-1.1461	-0.00057741	-1.0205	-0.00051414	504.30484494348076	113.89	0.39195	112.44	112.29	112.68	-1.4461					10	7	2	0	0	0	0.027462	1	10580	10580		29.15	0	1	13695	+		32941	17377	27109	27134	36311	36311					0.09070233758768609
LLVVFFLI	8	Unmodified	_LLVVFFLI_					0	0	0			REV__tr|A0A553SFG9|A0A553SFG9_NIACIABCtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08855PE=3SV=1	REV__tr|A0A553SFG9|A0A553SFG9_NIACIABCtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08855PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.8173828125	2	482.317515	962.620476	0.55808	0.00026917	-2.5979	-0.001253	-2.0398	-0.00098384	482.3162685455158	161.05	1.366	161.05	160.71	162.07	0					36	26	2	0	0	0	0.028476	1	18879	18879		33.493	0	1	72252	+		32942	29577	27110	27135	36312	36312					0.13767085361484988
LLVVHVAAMLA	11	Unmodified	_LLVVHVAAMLA_					0	0	0		nc|ENSG00000096395|P12872-2|MLN;nc|ENSG00000096395|P12872-3|MLN;ENSG00000096395|ENST00000430124|MLN	nc|ENSG00000096395|P12872-2|MLN	nc|ENSG00000096395|P12872-2|MLN	MULTI-MSMS	OvCa9_classI_Rep3	3	568.8483276367188	2	568.846645	1135.67874	1.1361	0.00064626	-1.1496	-0.00065395	-0.013528	-7.6955E-06	568.845786397459	122.98	2.0826	121.95	121	123.08	-1.034					125	39	4	0	0	0	0.71591	1	9529	9529		24.203	1.1603	1	474050			32943	1947	27111	27136	36313	36313					0.11632398944448141
LLVVIARLN	9	Unmodified	_LLVVIARLN_					0	0	0		CHSY3-NINJ2|1|fusion;ENSG00000171840|ENST00000305108|NINJ2	CHSY3-NINJ2|1|fusion	CHSY3-NINJ2|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.2754821777344	2	505.839677	1009.6648	-1.4454	-0.00073114	1.2732	0.00064405	-0.17216	-8.7087E-05	505.8401969003172	84.263	1.4168	82.717	82.378	83.795	-1.5462					59	27	4	0	0	0	0.027441	1	7313	7313		42.474	20.515	1	237500			32944	577	27112	27137	36314	36314					0.16035489507657985
LLVVIDVVYL	10	Unmodified	_LLVVIDVVYL_					0	0	0		Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|180|2|anti-sense;Harlequin-int_dup161|chr4:91353598-91357139:-|1.3911466287095282|0.2716421829311496|2.36|422.0|148|1|anti-sense;Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|246|3|anti-sense	Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|180|2|anti-sense	Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|180|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.7969970703125	2	573.36265	1144.71075	1.1121	0.00063762	1.9974	0.0011453	3.1095	0.0017829	573.3626231564631	111.51	0.36372	111.51	111.38	111.74	0					11	7	2	0	0	0	0.027204	1	12677	12677		11.511	0	1	38649			32945	14360	27113	27138	36315	36315					0.14418089899254483
LLVVLGRLQ	9	Unmodified	_LLVVLGRLQ_					0	0	0			REV__ENSG00000164494|ENST00000369037|PDSS2	REV__ENSG00000164494|ENST00000369037|PDSS2	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.82159423828125	2	505.839677	1009.6648	-0.81844	-0.000414	4.3212	0.0021858	3.5027	0.0017718	505.841894826221	69.561	0.20075	66.941	66.765	66.966	-2.6203					6	3	2	0	0	0	0.027462	1	5530	5530		40.573	6.4001	1	6795.4	+		32946	20992	27114	27139	36316	36316					0.16035489507669354
LLVVLGTIL	9	Unmodified	_LLVVLGTIL_					0	0	0			REV__ENSG00000070886|ENST00000166244|EPHA8	REV__ENSG00000070886|ENST00000166244|EPHA8	MULTI-MSMS	OvCa99_classI_Rep5	1	470.8274841308594	2	470.825704	939.636855	0.66106	0.00031124	-0.10183	-4.7944E-05	0.55923	0.0002633	470.82550127095874	161.06	3.0909	161.06	159.47	162.56	0					174	61	3	0	0	0	0.11842	1	18954	18954		92.191	12.251	1	597670	+		32947	16892	27115	27140	36317	36317					0.16462166527583122
LLVVMQDL	8	Unmodified	_LLVVMQDL_					0	0	0			REV__L1PB1_dup435|chr1:148902763-148905178:-|1.8547645190966555|0.2878265206874703|2.69|429.0|111|2|anti-sense	REV__L1PB1_dup435|chr1:148902763-148905178:-|1.8547645190966555|0.2878265206874703|2.69|429.0|111|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	466.23687744140625	2	465.770071	929.52559	0.27384	0.00012755	0.92818	0.00043232	1.202	0.00055987	465.77044178587676	43.997	0.64805	41.288	41.104	41.752	-2.7097					17	12	2	0	0	0	0.028476	1	2455	2455		23.042	0	1	51610	+		32948	28585	27116	27141	36318	36318					0.05800783827965006
LLVVVHVIN	9	Unmodified	_LLVVVHVIN_					0	0	0		ENSG00000145107|ENST00000273695|TM4SF19;nc|ENSG00000145107|Q96DZ7-2|TM4SF19	ENSG00000145107|ENST00000273695|TM4SF19	ENSG00000145107|ENST00000273695|TM4SF19	MULTI-MSMS	OvCa9_classI_Rep2	2	503.32568359375	2	503.326402	1004.63825	0.14036	7.0648E-05	-0.73987	-0.0003724	-0.59951	-0.00030175	503.32594865659956	112.82	1.9244	112.7	112.28	114.2	-0.12174					111	38	5	0	0	0	0.22913	1	10752	10752		71.378	0.082209	1	946430			32949	5204	27117	27142	36319	36319					0.13611800616331493
LLVWVDTF	8	Unmodified	_LLVWVDTF_					0	0	0		HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|41|1|sense	HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|41|1|sense	HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|41|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.7532653808594	2	496.776211	991.537869	1.8647	0.00092635	-1.8834	-0.00093564	-0.018702	-9.2909E-06	496.7748478609664	137.73	0.80858	137.73	137.4	138.21	0					29	17	3	0	0	0	0.028476	1	16092	16092		52.299	0.96372	1	75644			32950	14430	27118	27143	36320	36320					0.04176143562654033
LLVYAIKKYG	10	Unmodified	_LLVYAIKKYG_					0	0	0		ENST00000567330.1_1_16:75743035-75743521:-|nuORF	ENST00000567330.1_1_16:75743035-75743521:-|nuORF	ENST00000567330.1_1_16:75743035-75743521:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	584.356689453125	2	584.360442	1166.70633	-4.6254	-0.0027029	-2.3023	-0.0013454	-6.9277	-0.0040483	584.3589865391973	145.25	4.5766	144.28	142.9	147.48	-0.97299					233	91	4	0	0	0	0.7759	1	12212	12212		21.96	0	1	156220			32951	13861	27119	27144	36321	36321					0.1296462547632018
LLVYYKEF	8	Unmodified	_LLVYYKEF_					0	0	0		tr|A0A7D6ZW35|A0A7D6ZW35_9CLOTHADfamilyhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17450PE=4SV=1	tr|A0A7D6ZW35|A0A7D6ZW35_9CLOTHADfamilyhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17450PE=4SV=1	tr|A0A7D6ZW35|A0A7D6ZW35_9CLOTHADfamilyhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17450PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.27978515625	2	537.797143	1073.57973	-0.078372	-4.2148E-05	-3.4234	-0.0018411	-3.5018	-0.0018832	537.7949049880275	73.034	0.71329	73.034	72.645	73.359	0					47	17	4	0	0	0	0.028476	1	7190	7190		31.955	5.2619	1	1371700			32952	35823	27120	27145	36322	36322					0.045886992511896096
LLWAAGPGP	9	Unmodified	_LLWAAGPGP_					0	0	0		ENST00000520967.1_1_5:139045379-139060149:+|nuORF;ENST00000503511.1_1_5:139055111-139060149:+|nuORF;ENST00000502295.1_1_5:139026996-139060149:+|nuORF;ENST00000509238.1_1_5:139039199-139060149:+|nuORF;ENST00000511048.1_1_5:139028522-139060149:+|nuORF;ENST00000512816.1_1_5:139030646-139060149:+|nuORF;ENST00000302517.7_1_5:139028169-139060149:+|nuORF	ENST00000520967.1_1_5:139045379-139060149:+|nuORF	ENST00000520967.1_1_5:139045379-139060149:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	441.2456359863281	2	441.247621	880.480688	-3.8908	-0.0017168	-2.8437	-0.0012548	-6.7345	-0.0029716	441.24608169660854	152.74	1.1671	151.3	150.89	152.06	-1.435					49	26	2	0	0	0	0.61768	1	15119	15119		29.842	4.3914	1	31120			32953	10202	27121	27146	36323	36323					0.03566721076947488
LLWAAGPGP	9	Unmodified	_LLWAAGPGP_					0	0	0		ENST00000520967.1_1_5:139045379-139060149:+|nuORF;ENST00000503511.1_1_5:139055111-139060149:+|nuORF;ENST00000502295.1_1_5:139026996-139060149:+|nuORF;ENST00000509238.1_1_5:139039199-139060149:+|nuORF;ENST00000511048.1_1_5:139028522-139060149:+|nuORF;ENST00000512816.1_1_5:139030646-139060149:+|nuORF;ENST00000302517.7_1_5:139028169-139060149:+|nuORF	ENST00000520967.1_1_5:139045379-139060149:+|nuORF	ENST00000520967.1_1_5:139045379-139060149:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	441.247621	880.480688	-4.6665	-0.0020591	-2.4252	-0.0010701	-7.0916	-0.0031292	441.24606432003907	152.26	0.80421	151.29	151.04	151.85	-0.97301	-0.0062078	0.0002789	NaN	29.842	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17079			32954	10202	27121	27146							0.03566721076947488
LLWAAQHLL	9	Unmodified	_LLWAAQHLL_					0	0	0		ENST00000590513.2_1_17:40706270-40706666:-|nuORF	ENST00000590513.2_1_17:40706270-40706666:-|nuORF	ENST00000590513.2_1_17:40706270-40706666:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.9510498046875	2	532.816202	1063.61785	-0.26388	-0.0001406	1.7243	0.00091871	1.4604	0.00077811	532.8193627356308	37.652	0.34988	34.76	34.641	34.991	-2.8925					9	6	2	0	0	0	0.027462	1	1421	1421		17.365	2.7009	1	5406.4			32955	14108	27122	27147	36324	36324					0.08858629956512232
LLWATNEESH	10	Unmodified	_LLWATNEESH_					0	0	0			REV__ENST00000483587.1_1_7:143973517-143974376:-|nuORF	REV__ENST00000483587.1_1_7:143973517-143974376:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	600.223876953125	2	600.288202	1198.56185	0.8251	0.0004953	-0.22507	-0.00013511	0.60002	0.00036019	600.2879561148994	159.97	0.93893	159.97	159.62	160.56	0					33	18	2	0	0	0	0.026968	1	18765	18765		3.1592	0	1	55045	+		32956	26529	27123	27148	36325	36325					-0.02948667741634381
LLWAVIQL	8	Unmodified	_LLWAVIQL_					0	0	0			REV__ENSG00000159714|ENST00000565726|ZDHHC1	REV__ENSG00000159714|ENST00000565726|ZDHHC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.3013916015625	2	478.302396	954.590239	-1.9525	-0.00093391	-4.4554	-0.002131	-6.4079	-0.0030649	478.3001635603855	87.855	1.3099	85.229	84.952	86.262	-2.6269					63	25	4	0	0	0	0.59103	1	7497	7497		65.897	1.6902	1	743720	+		32957	20624	27124	27149	36326	36326					0.11112726696285335
LLWDGDYI	8	Unmodified	_LLWDGDYI_					0	0	0			REV__ENSG00000185933|ENST00000329905|CALHM1	REV__ENSG00000185933|ENST00000329905|CALHM1	MULTI-MSMS	OvCa9_classI_Rep2	2	497.74566650390625	2	497.74765	993.480748	0.57283	0.00028512	-3.7017	-0.0018425	-3.1289	-0.0015574	497.7449483802943	125.92	1.3324	125.68	125.31	126.64	-0.2359					46	26	3	0	0	0	0.72922	1	12282	12282		37.028	5.4987	1	76202	+		32958	22546	27125	27150	36327	36327					-0.016253237137220822
LLWEKRLTKDL	11	Unmodified	_LLWEKRLTKDL_					0	0	0			REV__ENSG00000137819|ENST00000395407|PAQR5	REV__ENSG00000137819|ENST00000395407|PAQR5	MULTI-MSMS	OvCa9_classI_Rep3	3	472.2822265625	3	472.285405	1413.83439	-6.0448	-0.0028549	2.5608	0.0012094	-3.484	-0.0016454	472.28675973301637	159.08	3.3809	157.81	156.71	160.09	-1.267					177	72	4	0	0	0	0.72497	1	13691	13691		15.921	2.4127	1	110830	+		32959	19482	27126	27151	36328	36328					0.14402140999527546
LLWEKRLTKDL	11	Unmodified	_LLWEKRLTKDL_					0	0	0			REV__ENSG00000137819|ENST00000395407|PAQR5	REV__ENSG00000137819|ENST00000395407|PAQR5	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.61724853515625	3	472.285405	1413.83439	-4.4137	-0.0020845	1.1984	0.00056601	-3.2152	-0.0015185	472.28623594983816	156.93	2.47	155.39	154.2	156.67	-1.545					140	72	3	0	0	0	0.72528	1	15530	15530		11.932	2.2862	1	49755	+		32960	19482	27126	27151	36329	36329					0.14402140999527546
LLWFGHGR	8	Unmodified	_LLWFGHGR_					0	0	0			REV__ENST00000566317.1_1_16:88695075-88697704:+|nuORF	REV__ENST00000566317.1_1_16:88695075-88697704:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.30657958984375	2	493.271961	984.52937	0.51918	0.0002561	1.3298	0.00065595	1.849	0.00091205	493.2725229097222	140.59	0.47749	140.59	140.35	140.83	0					18	9	3	0	0	0	0.028476	1	16426	16426		20.482	4.0087	1	29536	+		32961	27700	27127	27152	36330	36330					0.036486344367062884
LLWGARAL	8	Unmodified	_LLWGARAL_					0	0	0			REV__nc|ENSG00000007264|P42679-3|MATK	REV__nc|ENSG00000007264|P42679-3|MATK	MULTI-MSMS	OvCa99_classI_Rep5	1	450.2756042480469	2	450.276712	898.538872	1.2148	0.00054698	-4.4595	-0.002008	-3.2447	-0.001461	450.2746495413925	151.48	0.78206	151.48	151.15	151.93	0					30	15	3	0	0	0	0.75991	1	17744	17744		21.702	0	1	291230	+		32962	16432	27128	27153	36331	36331					0.08554402722222676
LLWGLLMAV	9	Unmodified	_LLWGLLMAV_					0	0	0		nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000504717.1_1_22:50941822-50943237:-|nuORF;nc|ENSG00000100258|Q9BU23-3|LMF2	nc|ENSG00000100258|Q9BU23-2|LMF2	nc|ENSG00000100258|Q9BU23-2|LMF2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.7327880859375	2	508.304081	1014.59361	-0.21074	-0.00010712	0.53658	0.00027274	0.32583	0.00016562	508.3016566946793	64.938	0.58006	61.452	61.309	61.889	-3.4854					24	11	3	0	0	0	0.027462	1	4691	4691		29.842	0	1	44707			32963	2035	27129	27154	36332	36332					0.08689653478631953
LLWGNAVYL	9	Unmodified	_LLWGNAVYL_					0	0	0		nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B	nc|ENSG00000054523|O60333-2|KIF1B	nc|ENSG00000054523|O60333-2|KIF1B	MULTI-MSMS	OvCa99_classI_Rep5	1	524.7960205078125	2	524.794935	1047.57532	0.39584	0.00020773	1.5161	0.00079565	1.9119	0.0010034	524.7955197782372	151.91	0.66057	151.91	151.7	152.36	0					26	12	3	0	0	0	0.13154	1	17803	17803		88.643	20.158	1	151720			32964	1210	27130	27155	36333	36333					0.05343234828274035
LLWIVEDA	8	Unmodified	_LLWIVEDA_					0	0	0			REV__ENSG00000159495|ENST00000452443|TGM7	REV__ENSG00000159495|ENST00000452443|TGM7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.2310485839844	2	479.765843	957.517133	-0.11836	-5.6785E-05	-4.1119	-0.0019728	-4.2303	-0.0020295	479.763790552768	66.712	0.58953	63.222	62.951	63.541	-3.4902					15	11	2	0	0	0	0.028476	1	4845	4845		35.201	0	1	37480	+		32965	20618	27131	27156	36334	36334					0.03667553182992833
LLWLGLALL	9	Unmodified	_LLWLGLALL_					0	0	0		ENST00000470902.5_1_9:130911720-130912803:+|nuORF;nc|ENSG00000148346|P80188-2|LCN2;ENSG00000148346|ENST00000277480|LCN2	ENST00000470902.5_1_9:130911720-130912803:+|nuORF	ENST00000470902.5_1_9:130911720-130912803:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	506.3304443359375	2	506.333696	1010.65284	-0.49607	-0.00025117	-3.7021	-0.0018745	-4.1982	-0.0021257	506.331740533061	135.27	1.2754	135.05	134.74	136.01	-0.22697					65	25	4	0	0	0	0.42921	1	13422	13422		49.211	0	1	139920			32966	5402	27132	27157	36335	36335					0.14793872764460048
LLWLHGKKLF	10	Unmodified	_LLWLHGKKLF_					0	0	0			REV__tr|A0A553STN1|A0A553STN1_NIACIThiolreductantABCexportersubunitCydCOS=NialliacirculansOX=1397GN=cydCPE=4SV=1	REV__tr|A0A553STN1|A0A553STN1_NIACIThiolreductantABCexportersubunitCydCOS=NialliacirculansOX=1397GN=cydCPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	627.8851928710938	2	627.889701	1253.76485	-6.1904	-0.0038869	-1.0887	-0.00068357	-7.279	-0.0045704	627.888871662782	159.72	1.1788	158.11	157.75	158.93	-1.6101					65	26	3	0	0	0	0.77834	1	15759	15759		16.473	10.552	1	136730	+		32967	30987	27133	27158	36336	36336					0.1481172684145804
LLWLKNIL	8	Unmodified	_LLWLKNIL_					0	0	0			REV__ENST00000477085.1_1_X:107512310-107682601:-|nuORF	REV__ENST00000477085.1_1_X:107512310-107682601:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.8096008300781	2	506.83132	1011.64809	-1.1776	-0.00059685	3.8071	0.0019296	2.6295	0.0013327	506.83326462713535	100	0.29696	99.169	99.063	99.36	-0.83051					9	5	2	0	0	0	0.028476	1	9123	9123		86.935	32.17	1	10652	+		32968	26379	27134	27159	36337	36337					0.14272988621712557
LLWLPRPPL	9	Unmodified	_LLWLPRPPL_					0	0	0			REV__ENST00000372476.7_1_1:43773103-43773491:+|nuORF	REV__ENST00000372476.7_1_1:43773103-43773491:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.7910766601562	2	552.850045	1103.68554	2.0368	0.0011261	1.1874	0.00065645	3.2242	0.0017825	552.8507485445307	100.38	0.95432	100.38	99.694	100.65	0					26	22	2	0	0	0	0.027462	1	11038	11038		19.36	1.0356	1	1422200	+		32969	25005	27135	27160	36338	36338					0.13784079887318512
LLWLRKIISWM	11	Unmodified	_LLWLRKIISWM_					0	0	0		ENST00000392373.6_1_12:131306299-131311802:-|nuORF	ENST00000392373.6_1_12:131306299-131311802:-|nuORF	ENST00000392373.6_1_12:131306299-131311802:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	486.95989990234375	3	486.959976	1457.8581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	162.35	1	160.72	160.22	161.22	-1.6239								0	0	0	0.19474	1	16047	16047		10.104	0	1				32970	11219	27136	27161	36339	36339					0.14748283232393078
LLWPWRRRKKR	11	Unmodified	_LLWPWRRRKKR_					0	0	0		ENST00000456101.6_1_6:109766698-109772967:-|nuORF	ENST00000456101.6_1_6:109766698-109772967:-|nuORF	ENST00000456101.6_1_6:109766698-109772967:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.278076171875	3	532.335427	1593.98445	-0.96935	-0.00051602	-1.2112	-0.00064474	-2.1805	-0.0011608	532.3346616317929	59.124	0.99127	55.732	55.502	56.494	-3.392					50	19	4	0	0	0	0.026435	1	3911	3911		14.086	8.9436	1	246740			32971	12106	27137	27162	36340	36340					0.2112197057249432
LLWRQRRRRWP	11	Unmodified	_LLWRQRRRRWP_					0	0	0		ENST00000264010.8_1_16:67596501-67605146:+|nuORF	ENST00000264010.8_1_16:67596501-67605146:+|nuORF	ENST00000264010.8_1_16:67596501-67605146:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.298583984375	3	541.658681	1621.95422	0.065576	3.552E-05	-3.3036	-0.0017894	-3.238	-0.0017539	541.657156515418	32.009	0.29779	32.009	31.906	32.204	0					9	5	2	0	0	0	0.026488	1	1369	1369		6.3209	4.7979	1	27619			32972	9923	27138	27163	36341	36341					0.16811611907314727
LLWSLNPYL	9	Unmodified	_LLWSLNPYL_					0	0	0			REV__ENST00000480153.5_1_20:35399687-35402151:-|nuORF	REV__ENST00000480153.5_1_20:35399687-35402151:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	559.9737548828125	2	559.815867	1117.61718	1.1031	0.00061756	-0.081307	-4.5517E-05	1.0218	0.00057204	559.8157329084277	160.29	2.9539	160.29	159.57	162.53	0					135	58	4	0	0	0	0.53957	1	18747	18747		38.806	0.99462	1	827610	+		32973	26453	27139	27164	36342	36342					0.06307790516802925
LLWTASLLLLV	11	Unmodified	_LLWTASLLLLV_					0	0	0			REV__ENSG00000143126|ENST00000271332|CELSR2	REV__ENSG00000143126|ENST00000271332|CELSR2	MULTI-MSMS	OvCa9_classI_Rep3	3	621.3944702148438	2	621.397025	1240.7795	-5.8783	-0.0036528	0.27857	0.0001731	-5.5998	-0.0034797	621.3971766735674	163.98	0.24121	162.59	162.42	162.66	-1.3925					14	4	4	0	0	0	0.68684	1	14319	14319		34.173	0.25091	1	1563100	+		32974	19817	27140	27165	36343	36343					0.16873754198923052
LLWTQLDPA	9	Unmodified	_LLWTQLDPA_					0	0	0		OR10G8|p.D120Gfs*60|1|0.08|ENSG00000234560|chr11:124029979-124029980|-/G|frameshift_variant	OR10G8|p.D120Gfs*60|1|0.08|ENSG00000234560|chr11:124029979-124029980|-/G|frameshift_variant	OR10G8|p.D120Gfs*60|1|0.08|ENSG00000234560|chr11:124029979-124029980|-/G|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	528.7868041992188	2	528.78985	1055.56515	1.1307	0.00059791	1.3762	0.00072773	2.5069	0.0013256	528.7904624072938	144.62	1.2705	144.62	144.31	145.58	0					64	26	4	0	0	0	0.14739	1	16904	16904		85.359	8.0419	1	859350			32975	15450	27141	27166	36344	36344					0.03958627103043
LLWVARVRV	9	Unmodified	_LLWVARVRV_					0	0	0			REV__nc|ENSG00000123179|Q9BY08-3|EBPL	REV__nc|ENSG00000123179|Q9BY08-3|EBPL	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.8793334960938	2	556.358568	1110.70258	-0.28007	-0.00015582	-3.5337	-0.001966	-3.8138	-0.0021218	556.3565193872738	38.371	0.32499	38.371	38.161	38.486	0					11	6	2	0	0	0	0.027462	1	2154	2154		17.365	0.89182	1	135450	+		32976	28824	27142	27167	36345	36345					0.15166000493127285
LLWVDETF	8	Unmodified	_LLWVDETF_					0	0	0			REV__ENST00000306052.10_1_1:53712307-53712415:-|nuORF	REV__ENST00000306052.10_1_1:53712307-53712415:-|nuORF	MSMS	OvCa99_classI_Rep5	1	511.7666320800781	2	511.7633	1021.51205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	157.86	1	157.86	157.36	158.36	0								0	0	0	0.30129	1	18501	18501		44.531	0.15388	1		+		32977	24290	27143	27168	36346	36346					0.002152493203652739
LLWVTPNLT	9	Unmodified	_LLWVTPNLT_					0	0	0			REV__ENST00000588831.5_1_19:36428129-36428243:+|nuORF	REV__ENST00000588831.5_1_19:36428129-36428243:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	528.8128051757812	2	528.808042	1055.60153	1.1289	0.00059695	0.87663	0.00046357	2.0055	0.0010605	528.8084819356379	144.67	2.9037	144.67	144.06	146.96	0					106	59	4	0	0	0	0.12365	1	16940	16940		90.777	0	1	1313800	+		32978	27897	27144	27169	36347	36347					0.075955039997325
LLWYSTLS	8	Unmodified	_LLWYSTLS_					0	0	0			REV__ENST00000526048.1_1_11:64881042-64882849:+|nuORF	REV__ENST00000526048.1_1_11:64881042-64882849:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.2994079589844	2	491.765843	981.517133	-0.18368	-9.0327E-05	-3.8419	-0.0018893	-4.0256	-0.0019796	491.76395007941653	99.152	1.1823	96.827	96.484	97.667	-2.3253					35	22	3	0	0	0	0.028476	1	8830	8830		62.978	12.954	1	59155	+		32979	27124	27145	27170	36348	36348					0.025635531830062064
LLYAILFFAIP	11	Unmodified	_LLYAILFFAIP_					0	0	0		tr|A0A553SSJ7|A0A553SSJ7_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03205PE=3SV=1	tr|A0A553SSJ7|A0A553SSJ7_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03205PE=3SV=1	tr|A0A553SSJ7|A0A553SSJ7_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03205PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	640.888671875	2	640.886293	1279.75803	4.2244	0.0027074	1.3552	0.00086852	5.5796	0.0035759	640.8870407090299	132.38	1.5362	130.88	130.54	132.07	-1.5015					82	30	4	0	0	0	0.71591	1	12762	12762		24.203	1.6231	1	355310			32980	34383	27146	27171	36349	36349					0.12934369170238824
LLYGLINQI	9	Unmodified	_LLYGLINQI_					0	0	0			REV__tr|A0A7D6W3D0|A0A7D6W3D0_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_09355PE=4SV=1	REV__tr|A0A7D6W3D0|A0A7D6W3D0_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_09355PE=4SV=1	MSMS	OvCa9_classI_Rep2	2	523.8174438476562	2	523.815867	1045.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.5	1	122.28	121.78	122.78	-0.21803								0	0	0	0.18309	1	11863	11863		30.504	0.18592	1		+		32981	31913	27147	27172	36350	36350					0.0961979051680828
LLYHQRGHT	9	Unmodified	_LLYHQRGHT_					0	0	0		ENSG00000197483|ENST00000598519|ZNF628	ENSG00000197483|ENST00000598519|ZNF628	ENSG00000197483|ENST00000598519|ZNF628	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.35205078125	2	562.801614	1123.58868	0.84488	0.0004755	-1.464	-0.00082396	-0.61915	-0.00034846	562.8003749172095	117.42	0.83733	116.06	115.77	116.61	-1.3645					26	15	2	0	0	0	0.027441	1	10970	10970		45.952	0	1	83666			32982	8716	27148	27173	36351	36351					0.0318248566022703
LLYIDFLY	8	Unmodified	_LLYIDFLY_					0	0	0		ENST00000592279.6_1_19:15757939-15770192:+|nuORF;nc|ENSG00000186529|Q08477-2|CYP4F3;ENSG00000186529|ENST00000221307|CYP4F3	ENST00000592279.6_1_19:15757939-15770192:+|nuORF	ENST00000592279.6_1_19:15757939-15770192:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2794189453125	2	530.291694	1058.56883	1.9288	0.0010228	0.0088918	4.7152E-06	1.9377	0.0010275	530.291841064351	91.987	0.21191	91.987	91.92	92.132	0					7	4	2	0	0	0	0.028476	1	9940	9940		57.453	0	1	198730			32983	8345	27149	27174	36352	36352					0.0418929687691616
LLYILNSNTPE	11	Unmodified	_LLYILNSNTPE_					0	0	0		tr|A0A7D7AB64|A0A7D7AB64_9CLOTCation-transportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14125PE=4SV=1	tr|A0A7D7AB64|A0A7D7AB64_9CLOTCation-transportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14125PE=4SV=1	tr|A0A7D7AB64|A0A7D7AB64_9CLOTCation-transportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14125PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	638.8450317382812	2	638.84281	1275.67107	-0.72166	-0.00046103	1.7329	0.001107	1.0112	0.00064601	638.8438331848862	101.97	1.8306	100.44	99.845	101.68	-1.5211					95	34	5	0	0	0	0.56391	1	7009	7009		47.96	4.3087	1	808980			32984	36215	27150	27175	36353	36353					0.044259181578581774
LLYKPYLD	8	Unmodified	_LLYKPYLD_					0	0	0			REV__HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|107|1|anti-sense	REV__HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|107|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.7871704101562	2	512.789318	1023.56408	-0.017962	-9.2106E-06	-4.3807	-0.0022464	-4.3987	-0.0022556	512.7870225821379	109.44	2.2555	107.72	107.42	109.68	-1.7256					93	42	4	0	0	0	0.56113	1	10054	10054		71.378	0	1	341840	+		32985	28283	27151	27176	36354	36354					0.05324412734125872
LLYKSTRTN	9	Unmodified	_LLYKSTRTN_					0	0	0			REV__chr1:103651377-103750424|201|17.3|0.0|20.72|+|0|TE_info:HERVE_a-int,HERVE_a-int_dup2,ERV1,LTR,donor,-,103648516,103651377|None,AMY1C|46	REV__chr1:103651377-103750424|201|17.3|0.0|20.72|+|0|TE_info:HERVE_a-int,HERVE_a-int_dup2,ERV1,LTR,donor,-,103648516,103651377|None,AMY1C|46	MULTI-SECPEP	OvCa9_classI_Rep3	3	547.3280639648438	2	548.31148	1094.60841	-1.1921	-0.00065364	1.1295	0.00061933	-0.062576	-3.4311E-05	548.3120488155935	94.319	1.0088	92.424	92.102	93.111	-1.8956					53	19	5	0	0	0	0.02741	1	6137	6137		60.972	0	1	271980	+		32986	15791	27152	27177	36355	36355					0.06488816880346349
LLYKTLID	8	Unmodified	_LLYKTLID_					0	0	0		nc|ENSG00000173575|O14647-2|CHD2;ENSG00000173575|ENST00000394196|CHD2;nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1;CHD1|p.D670Vfs*3|1|0.07|ENSG00000153922|chr5:98892696-98892697|-/A|frameshift_variant	nc|ENSG00000173575|O14647-2|CHD2;nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000173575|O14647-2|CHD2	MULTI-MSMS	OvCa99_classI_Rep5	1	489.8004455566406	2	489.797143	977.579734	0.35762	0.00017516	4.1576	0.0020364	4.5152	0.0022115	489.79900077673824	160.64	3.1469	160.64	159.38	162.53	0					149	62	3	0	0	0	0.74229	1	18870	18870		30.504	3.7075	1	288360			32987	7391;5701	27153	27178	36356	36356					0.09004699251181592
LLYLCFNRFG	10	Unmodified	_LLYLCFNRFG_					0	0	0		ENST00000507209.5_1_4:187117965-187118319:+|nuORF	ENST00000507209.5_1_4:187117965-187118319:+|nuORF	ENST00000507209.5_1_4:187117965-187118319:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.561767578125	3	415.886476	1244.6376	-0.0098614	-4.1012E-06	-0.70251	-0.00029217	-0.71237	-0.00029627	415.8863044585086	25.668	0.44876	25.668	25.544	25.992	0					11	8	2	0	0	0	0.02706	1	582	582		17.468	0	1	43744			32988	12923	27154	27179	36357	36357					0.025066379049349052
LLYLLLII	8	Unmodified	_LLYLLLII_					0	0	0		GPR155|p.C662Y|1|0.05|ENSG00000163328|chr2:174446639-174446639|C/T|missense_variant	GPR155|p.C662Y|1|0.05|ENSG00000163328|chr2:174446639-174446639|C/T|missense_variant	GPR155|p.C662Y|1|0.05|ENSG00000163328|chr2:174446639-174446639|C/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.2885437011719	2	487.338447	972.662341	-1.2667	-0.00061729	2.7982	0.0013637	1.5316	0.00074638	487.3376674662782	48.947	0.26184	45.84	45.709	45.971	-3.1077					5	4	2	0	0	0	0.028476	1	2737	2737		10.185	0	1	4382.7			32989	14351	27155	27180	36358	36358					0.17491641049991813
LLYLPHLPY	9	Unmodified	_LLYLPHLPY_					0	0	0		ENST00000572615.1_1_17:1372344-1373609:-|nuORF	ENST00000572615.1_1_17:1372344-1373609:-|nuORF	ENST00000572615.1_1_17:1372344-1373609:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.3518676757812	2	564.826235	1127.63792	1.5803	0.00089257	0.28901	0.00016324	1.8693	0.0010558	564.8263145460398	146.1	0.59872	146.1	145.83	146.43	0					23	11	3	0	0	0	0.027412	1	17068	17068		49.211	1.2952	1	111190			32990	13912	27156	27181	36359	36359					0.0792038089646212
LLYLSSSL	8	Unmodified	_LLYLSSSL_					0	0	0		nc|ENSG00000263528|Q14164-2|IKBKE;ENSG00000263528|ENST00000581977|IKBKE	nc|ENSG00000263528|Q14164-2|IKBKE	nc|ENSG00000263528|Q14164-2|IKBKE	MULTI-MSMS	OvCa9_classI_Rep3	3	448.2586364746094	2	448.260394	894.506234	-2.462	-0.0011036	-0.24807	-0.0001112	-2.71	-0.0012148	448.2601337945915	142.71	1.2357	141.7	141.38	142.62	-1.0102					68	24	5	0	0	0	0.73288	1	11850	11850		35.201	0	1	329850			32991	9515	27157	27182	36360	36360					0.05476150808715374
LLYLTAGT	8	Unmodified	_LLYLTAGT_					0	0	0			REV__ENST00000486007.1_1_7:10977674-10979684:-|nuORF	REV__ENST00000486007.1_1_7:10977674-10979684:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	426.24603271484375	2	426.247286	850.48002	-0.93249	-0.00039747	-2.0488	-0.0008733	-2.9813	-0.0012708	426.2463036759244	138.33	1.7168	138.1	137.59	139.3	-0.22696					83	34	3	0	0	0	0.72922	2	13834	13779;13834		37.028	0	1	161940	+		32992	26577	27158	27183	36361;36362	36362					0.04879881637236849
LLYLTAGT	8	Unmodified	_LLYLTAGT_					0	0	0			REV__ENST00000486007.1_1_7:10977674-10979684:-|nuORF	REV__ENST00000486007.1_1_7:10977674-10979684:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	426.24530029296875	2	426.247286	850.48002	-1.1759	-0.00050123	-1.8651	-0.00079498	-3.041	-0.0012962	426.2464135300909	139.12	1.5749	138.06	137.54	139.11	-1.0595					80	31	4	0	0	0	0.68312	1	11412	11412		46.766	0	1	422340	+		32993	26577	27158	27183	36363	36363					0.04879881637236849
LLYNFKSL	8	Unmodified	_LLYNFKSL_					0	0	0			REV__DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant	REV__DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.8214111328125	2	499.289485	996.564418	1.3892	0.00069362	0.67891	0.00033897	2.0681	0.0010326	499.2894585654483	109.93	0.63107	109.93	109.64	110.27	0					16	13	2	0	0	0	0.028476	1	12462	12462		18.324	0	1	134910	+		32994	16314	27159	27184	36364	36364					0.06599832453991894
LLYPCWVPE	9	Unmodified	_LLYPCWVPE_					0	0	0			REV__ENSG00000120008|ENST00000263461|WDR11	REV__ENSG00000120008|ENST00000263461|WDR11	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.7760620117188	2	560.280803	1118.54705	3.0913	0.001732	3.3781	0.0018927	6.4694	0.0036247	560.2830105951217	121.39	0.65414	121.39	121.15	121.8	0					18	14	2	0	0	0	0.027462	1	14008	14008		47.916	23.396	1	150090	+		32995	18480	27160	27185	36365	36365					-0.007478311433260387
LLYPLALLI	9	Unmodified	_LLYPLALLI_					0	0	0		tr|A0A553STI8|A0A553STI8_NIACISporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_04940PE=3SV=1	tr|A0A553STI8|A0A553STI8_NIACISporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_04940PE=3SV=1	tr|A0A553STI8|A0A553STI8_NIACISporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_04940PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.2896728515625	2	514.841354	1027.66815	2.279	0.0011733	-3.4025	-0.0017517	-1.1235	-0.00057841	514.8395586961168	98.745	1.0226	98.745	98.506	99.529	0					32	24	2	0	0	0	0.027462	1	10892	10892		21.702	0	1	390670			32996	34493	27161	27186	36366	36366					0.15542739561669805
LLYPPPLTSS	10	Unmodified	_LLYPPPLTSS_					0	0	0			REV__ENSG00000156140|ENST00000286657|ADAMTS3	REV__ENSG00000156140|ENST00000286657|ADAMTS3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.25341796875	2	544.305332	1086.59611	-0.85137	-0.0004634	-3.4345	-0.0018694	-4.2859	-0.0023328	544.3048018786394	106.03	1.3709	104.02	103.4	104.77	-2.0161					68	26	4	0	0	0	0.026697	1	9599	9599		37.159	0	1	114270	+		32997	20462	27162	27187	36367	36367					0.056277804172850665
LLYQCPII	8	Unmodified	_LLYQCPII_					0	0	0			REV__ENSG00000108510|ENST00000397786|MED13	REV__ENSG00000108510|ENST00000397786|MED13	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.8173828125	2	481.772614	961.530675	0.56993	0.00027458	-4.2584	-0.0020516	-3.6885	-0.001777	481.77045757244815	161.29	0.35349	161.29	161.01	161.36	0					11	6	2	0	0	0	0.028476	1	18879	18879		60.294	5.3994	1	19483	+		32998	17893	27163	27188	36368	36368					0.048370876905892146
LLYQEGAKMAV	11	Unmodified	_LLYQEGAKMAV_					0	0	0		ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	OvCa99_classI_Rep5	1	611.8319091796875	2	611.828649	1221.64274	3.5353	0.002163	-1.4614	-0.00089413	2.0739	0.0012689	611.8276543016715	88.532	0.6312	88.532	88.212	88.843	0					33	14	3	0	0	0	0.24327	1	9416	9416		74.165	17.444	1	1253600			32999	7415	27164	27189	36369	36369					0.04078896976920987
LLYQQAQIL	9	Unmodified	_LLYQQAQIL_					0	0	0			REV__PET112-FAM160A1|1|fusion	REV__PET112-FAM160A1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	545.316162109375	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.59983	1	14291	14291		31.955	0.42505	1	202430	+		33000	29287	27165	27190	36370	36370					0.08222889028479585
LLYRAFYNL	9	Unmodified	_LLYRAFYNL_					0	0	0		tr|A0A7D6VS33|A0A7D6VS33_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04470PE=4SV=1	tr|A0A7D6VS33|A0A7D6VS33_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04470PE=4SV=1	tr|A0A7D6VS33|A0A7D6VS33_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04470PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	586.787353515625	2	586.826766	1171.63898	-1.6282	-0.00095549	-4.4003	-0.0025822	-6.0286	-0.0035377	587.3252349306435	61.746	0.81987	58.987	58.515	59.335	-2.7593					20	15	2	0	0	0	0.027462	1	4632	4632		17.365	0	1	19360			33001	34981	27166	27191	36371	36371					0.060025952653631975
LLYRPGKV	8	Unmodified	_LLYRPGKV_					0	0	0			REV__ENSG00000112195|ENST00000483722|TREML2	REV__ENSG00000112195|ENST00000483722|TREML2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.6095275878906	2	473.297645	944.580737	-0.14339	-6.7867E-05	-1.3259	-0.00062757	-1.4693	-0.00069543	473.2969721287051	95.959	1.5164	93.534	92.704	94.22	-2.4256					41	29	2	0	0	0	0.028476	1	8526	8526		17.365	0	1	293210	+		33002	18082	27167	27192	36372	36372					0.10622958410749561
LLYRRIDD	8	Unmodified	_LLYRRIDD_					0	0	0			REV__ENSG00000076003|ENST00000264156|MCM6	REV__ENSG00000076003|ENST00000264156|MCM6	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.7600708007812	2	532.298373	1062.58219	2.0865	0.0011106	3.9456	0.0021002	6.0321	0.0032109	532.3003216543209	95.459	0.75021	95.459	95.119	95.869	0					43	17	3	0	0	0	0.028476	1	10388	10388		29.15	2.4566	1	1356400	+		33003	16983	27168	27193	36373	36373					0.053405477088290354
LLYSFNLI	8	Unmodified	_LLYSFNLI_					0	0	0		IGF2R|p.S1818Ifs*11|1|0.13|ENSG00000197081|chr6:160078335-160078336|-/AT|frameshift_variant	IGF2R|p.S1818Ifs*11|1|0.13|ENSG00000197081|chr6:160078335-160078336|-/AT|frameshift_variant	IGF2R|p.S1818Ifs*11|1|0.13|ENSG00000197081|chr6:160078335-160078336|-/AT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	491.8010559082031	2	491.784036	981.553519	0.037011	1.8202E-05	-2.8894	-0.001421	-2.8524	-0.0014028	491.7825750583047	107.24	0.24493	105.97	105.9	106.15	-1.267					7	4	2	0	0	0	0.028476	1	7612	7612		68.485	0	1	14269			33004	14499	27169	27194	36374	36374					0.062004300797070755
LLYSLGDASFQ	11	Unmodified	_LLYSLGDASFQ_					0	0	0			REV__tr|A0A7D6VMV8|A0A7D6VMV8_9CLOTParAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13285PE=4SV=1	REV__tr|A0A7D6VMV8|A0A7D6VMV8_9CLOTParAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13285PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	607.311279296875	2	607.308603	1212.60265	1.197	0.00072693	2.3368	0.0014191	3.5337	0.0021461	607.3099558090541	89.383	2.1504	87.252	86.315	88.465	-2.1309					113	42	3	0	0	0	0.61983	1	5504	5504		42.864	2.0861	1	757940	+		33005	31150	27170	27195	36375	36375					0.004856735779867449
LLYSMLSVP	9	Unmodified	_LLYSMLSVP_					0	0	0		tr|A0A553SHQ5|A0A553SHQ5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_13445PE=4SV=1	tr|A0A553SHQ5|A0A553SHQ5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_13445PE=4SV=1	tr|A0A553SHQ5|A0A553SHQ5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_13445PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.31134033203125	2	511.783179	1021.5518	0.85091	0.00043548	1.4842	0.00075957	2.3351	0.0011951	511.7834207163106	97.212	1.0617	94.787	94.516	95.577	-2.4256					28	20	2	0	0	0	0.027462	1	8639	8639		24.203	4.206	1	81462			33006	33297	27171	27196	36376	36376					0.04189052999458909
LLYSSEFR	8	Unmodified	_LLYSSEFR_					0	0	0		ENST00000481677.1_1_1:160808287-160808924:-|nuORF	ENST00000481677.1_1_1:160808287-160808924:-|nuORF	ENST00000481677.1_1_1:160808287-160808924:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.76513671875	2	507.766374	1013.5182	-2.8803	-0.0014625	-1.5782	-0.00080136	-4.4585	-0.0022639	507.76550943835366	36.279	0.83902	33.569	33.35	34.189	-2.7097					40	16	4	0	0	0	0.68714	1	1534	1534		45.952	3.4775	1	316260			33007	12550	27172	27197	36377	36377					0.01197767551900597
LLYSTVAKL	9	Unmodified	_LLYSTVAKL_					0	0	0		L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|180|1|anti-sense	L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|180|1|anti-sense	L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|180|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	504.30938720703125	2	504.310418	1006.60628	0.84701	0.00042715	-1.3908	-0.00070138	-0.54377	-0.00027423	504.3095626298887	121.76	1.205	120.73	120.43	121.64	-1.0286					54	22	3	0	0	0	0.50149	1	9343	9343		42.396	1.8235	1	146370			33008	14576	27173	27198	36378	36378					0.10324388142510088
LLYTDVTLVLE	11	Unmodified	_LLYTDVTLVLE_					0	0	0			REV__ENST00000314728.9_1_17:19239740-19240025:+|nuORF	REV__ENST00000314728.9_1_17:19239740-19240025:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	639.8640747070312	2	639.863211	1277.71187	0.046644	2.9846E-05	4.3777	0.0028011	4.4244	0.002831	640.3676740956611	131.41	0.88071	130.28	130.06	130.94	-1.1249					36	17	3	0	0	0	0.72473	1	10458	10458		19.104	0	1	21149	+		33009	24385	27174	27199	36379	36379					0.08412259477472617
LLYVWLIFTE	10	Unmodified	_LLYVWLIFTE_					0	0	0			REV__ENSG00000164946|ENST00000380880|FREM1	REV__ENSG00000164946|ENST00000380880|FREM1	MULTI-SECPEP	OvCa9_classI_Rep3	3	433.1716613769531	3	432.912797	1295.71656	2.7014	0.0011695	3.2518	0.0014077	5.9532	0.0025772	432.9141875751173	57.051	0.66148	53.901	53.432	54.094	-3.1504					35	23	2	0	0	0	0.02709	1	1644	1644		29.17	0.59333	1	21327	+		33010	21042	27175	27200	36380	36380					0.08053188410895018
LLYYKKLN	8	Unmodified	_LLYYKKLN_					0	0	0			REV__ENST00000476588.5_1_3:93781949-93803329:+|nuORF	REV__ENST00000476588.5_1_3:93781949-93803329:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	527.8167114257812	2	527.81841	1053.62227	-0.62231	-0.00032847	1.4033	0.00074071	0.78103	0.00041224	527.8186129379317	132.72	1.4756	131.6	131.24	132.71	-1.1249					60	29	3	0	0	0	0.72922	1	10626	10626		37.028	3.5129	1	124870	+		33011	22072	27176	27201	36381	36381					0.09760094379430484
LLYYKLPD	8	Unmodified	_LLYYKLPD_					0	0	0			REV__nc|ENSG00000203880|Q9NV79-3|PCMTD2	REV__nc|ENSG00000203880|Q9NV79-3|PCMTD2	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.787353515625	2	512.789318	1023.56408	-0.017962	-9.2106E-06	-4.3807	-0.0022464	-4.3987	-0.0022556	512.7870225821379	109.44	2.2555	107.72	107.42	109.68	-1.7256					93	42	4	0	0	0	0.64377	1	10066	10066		54.765	10.648	1	341840	+		33012	23118	27177	27202	36382	36382					0.05324412734148609
LLYYMLLSL	9	Unmodified	_LLYYMLLSL_					0	0	0			REV__tr|A0A553SHP0|A0A553SHP0_NIACIRegulatoryproteinYycHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13340PE=4SV=1	REV__tr|A0A553SHP0|A0A553SHP0_NIACIRegulatoryproteinYycHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13340PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.2978515625	2	564.822304	1127.63005	0.90774	0.00051271	3.4451	0.0019459	4.3529	0.0024586	565.3253633515809	105.13	0.99891	103.12	102.85	103.85	-2.0161					37	19	3	0	0	0	0.027462	1	9527	9527		31.955	1.6371	1	59218	+		33013	29823	27178	27203	36383	36383					0.07134485584697359
LLYYMLLSL	9	Unmodified	_LLYYMLLSL_					0	0	0			REV__tr|A0A553SHP0|A0A553SHP0_NIACIRegulatoryproteinYycHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13340PE=4SV=1	REV__tr|A0A553SHP0|A0A553SHP0_NIACIRegulatoryproteinYycHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13340PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	564.822304	1127.63005	-0.63851	-0.00036064	6.0838	0.0034363	5.4453	0.0030756	565.3270275207559	103.72	0.93958	103.15	102.83	103.77	-0.57639	0.015728	0.00077358	NaN	31.955	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42408	+		33014	29823	27178	27203							0.07134485584697359
LLYYQCPYF	9	Unmodified	_LLYYQCPYF_					0	0	0			REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	MULTI-MSMS	OvCa99_classI_Rep5	1	605.2894287109375	2	605.286085	1208.55762	1.4664	0.00088757	3.632	0.0021984	5.0984	0.003086	605.288024536649	143.64	1.7689	143.64	143.32	145.08	0					83	35	4	0	0	0	0.32337	1	16795	16795		60.294	3.5729	1	706320	+		33015	20275	27179	27204	36384	36384					-0.03831848488880496
LLYYVNLLLI	10	Unmodified	_LLYYVNLLLI_					0	0	0		ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	MULTI-MSMS	OvCa9_classI_Rep4_	4	412.92767333984375	3	412.924925	1235.75295	-0.45561	-0.00018813	3.6901	0.0015237	3.2345	0.0013356	412.926517070453	55.311	2.1325	52.016	51.648	53.781	-3.2944					136	41	5	0	0	0	0.5675	1	3469	3469		45.972	0.95004	1	2139000			33016	2506	27180	27205	36385	36385					0.14450065307619298
LMAADCHGL	9	Unmodified	_LMAADCHGL_					0	0	0			REV__tr|A0A553SS47|A0A553SS47_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_02420PE=4SV=1	REV__tr|A0A553SS47|A0A553SS47_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_02420PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.77777099609375	2	465.71223	929.409908	3.8747	0.0018045	4.0222	0.0018732	7.8969	0.0036777	465.7139144125012	132.3	0.9628	130.8	130.32	131.29	-1.5015					27	18	2	0	0	0	0.027462	1	12682	12682		33.516	0	1	25708	+		33017	30804	27181	27206	36386	36386					-0.057620632945258876
LMADNRCH	8	Unmodified	_LMADNRCH_					0	0	0		tr|A0A7D6VU47|A0A7D6VU47_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00380PE=4SV=1	tr|A0A7D6VU47|A0A7D6VU47_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00380PE=4SV=1	tr|A0A7D6VU47|A0A7D6VU47_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00380PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	480.2139587402344	2	480.212929	958.411305	2.0898	0.0010035	0.71817	0.00034487	2.8079	0.0013484	480.2131363597697	112.08	1.2814	110.97	110.65	111.93	-1.1038					59	25	3	0	0	0	0.68714	1	8171	8171		45.952	10.751	1	400920			33018	35164	27182	27207	36387	36387					-0.06956429205774839
LMAFIKKKEN	10	Unmodified	_LMAFIKKKEN_					0	0	0		tr|A0A7D6VQA3|A0A7D6VQA3_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19600PE=4SV=1	tr|A0A7D6VQA3|A0A7D6VQA3_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19600PE=4SV=1	tr|A0A7D6VQA3|A0A7D6VQA3_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19600PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	611.355224609375	2	611.354834	1220.69511	-2.3862	-0.0014588	4.2549	0.0026013	1.8688	0.0011425	611.3572929291362	147.43	3.7918	146.48	144.56	148.35	-0.9512					254	75	5	0	0	0	0.71192	1	12415	12415		29.15	0	1	250910			33019	34833	27183	27208	36388	36388					0.0935948011056098
LMAIGIQANK	10	Unmodified	_LMAIGIQANK_					0	0	0			REV__ENST00000592462.5_1_17:42452826-42458421:-|nuORF	REV__ENST00000592462.5_1_17:42452826-42458421:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	529.802978515625	2	529.804977	1057.5954	0.35582	0.00018852	1.3613	0.00072122	1.7171	0.00090973	529.8030255036192	105.38	2.0148	104.03	103.57	105.59	-1.3482					144	38	5	0	0	0	0.31157	2	7378	7378;7453		79.451	7.5735	1	4513200	+		33020	16407	27184	27209	36389;36390	36389					0.06890662496562072
LMAIGSKIL	9	Oxidation (M)	_LM(Oxidation (M))AIGSKIL_		LM(1)AIGSKIL		LM(69)AIGSKIL	0	0	1			REV__tr|A0A553SF97|A0A553SF97_NIACIsn-glycerol-1-phosphatedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_08530PE=4SV=1	REV__tr|A0A553SF97|A0A553SF97_NIACIsn-glycerol-1-phosphatedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_08530PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	481.2893371582031	2	481.291171	960.567789	-0.34175	-0.00016448	-3.3512	-0.0016129	-3.693	-0.0017774	481.28942288726415	93.511	1.2404	92.343	92.003	93.244	-1.168					66	23	4	0	0	0	0.24951	1	8341	8341		68.787	6.6794	1	689600	+		33021	29553	27185	27210	36391	36391		648			0.085927592363646
LMAIRWPVI	9	Unmodified	_LMAIRWPVI_					0	0	0			REV__tr|A0A553SN21|A0A553SN21_NIACIDUF1453familyproteinOS=NialliacirculansOX=1397GN=CEQ21_23615PE=4SV=1	REV__tr|A0A553SN21|A0A553SN21_NIACIDUF1453familyproteinOS=NialliacirculansOX=1397GN=CEQ21_23615PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	549.8265991210938	2	549.828255	1097.64196	0.51244	0.00028176	1.2068	0.00066352	1.7192	0.00094527	549.8288345990625	109.7	1.1379	109.53	109.31	110.45	-0.17237					49	22	3	0	0	0	0.44294	1	10321	10321		47.916	3.5384	1	73674	+		33022	30389	27186	27211	36392	36392					0.09704147118532092
LMAISSGAVVH	11	Unmodified	_LMAISSGAVVH_					0	0	0		ENSG00000129911|ENST00000250916|KLF16	ENSG00000129911|ENST00000250916|KLF16	ENSG00000129911|ENST00000250916|KLF16	MULTI-MSMS	OvCa9_classI_Rep3	3	542.7935791015625	2	542.794609	1083.57467	0.43899	0.00023828	-3.7628	-0.0020424	-3.3238	-0.0018041	542.7924359243464	131.02	0.7299	129.89	129.66	130.39	-1.1249					25	14	3	0	0	0	0.67814	1	10429	10429		37.159	2.9866	1	50077			33023	3946	27187	27212	36393	36393					0.036220721169229364
LMAKKVHAD	9	Unmodified	_LMAKKVHAD_					0	0	0			REV__tr|A0A7D7AC35|A0A7D7AC35_9CLOTDeoR/GlpRtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_17610PE=4SV=1	REV__tr|A0A7D7AC35|A0A7D7AC35_9CLOTDeoR/GlpRtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_17610PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.8124084472656	2	506.784044	1011.55354	-1.0014	-0.00050749	-1.0493	-0.00053179	-2.0507	-0.0010393	506.7805347842089	89.516	0.40797	87.436	87.288	87.696	-2.0805					10	7	2	0	0	0	0.027343	1	5512	5512		68.787	0	1	17111	+		33024	32683	27188	27213	36394	36394					0.048221068080579244
LMAKRIGKD	9	Unmodified	_LMAKRIGKD_					0	0	0		nc|ENSG00000162236|Q13190-3|STX5;nc|ENSG00000162236|Q13190-2|STX5;nc|ENSG00000162236|Q13190-4|STX5;ENSG00000162236|ENST00000294179|STX5	nc|ENSG00000162236|Q13190-3|STX5	nc|ENSG00000162236|Q13190-3|STX5	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.2871704101562	2	516.305144	1030.59573	-1.4163	-0.00073127	1.6445	0.00084908	0.22818	0.00011781	516.3055525893844	34.639	0.23369	34.639	34.491	34.725	0					8	4	2	0	0	0	0.027462	1	1687	1687		39.253	19.893	1	47957			33025	6164	27189	27214	36395	36395					0.08166082216439463
LMAKRIGKD	9	Unmodified	_LMAKRIGKD_					0	0	0		nc|ENSG00000162236|Q13190-3|STX5;nc|ENSG00000162236|Q13190-2|STX5;nc|ENSG00000162236|Q13190-4|STX5;ENSG00000162236|ENST00000294179|STX5	nc|ENSG00000162236|Q13190-3|STX5	nc|ENSG00000162236|Q13190-3|STX5	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	516.305144	1030.59573	0.43422	0.00022419	-3.8816	-0.0020041	-3.4473	-0.0017799	516.3028521022915	37.722	0.74626	34.83	34.691	35.437	-2.8925	0.095364	-0.0030158	NaN	31.53	17	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10912			33026	6164	27189	27214							0.08166082216439463
LMALPTSGLR	10	Unmodified	_LMALPTSGLR_					0	0	0			REV__ENSG00000164651|ENST00000418710|SP8	REV__ENSG00000164651|ENST00000418710|SP8	MULTI-MSMS	OvCa9_classI_Rep3	3	529.8040771484375	2	529.804977	1057.5954	0.35582	0.00018852	1.3613	0.00072122	1.7171	0.00090973	529.8030255036192	105.38	2.0148	104.03	103.57	105.59	-1.3482					144	38	5	0	0	0	0.26627	1	7366	7366		84.916	2.6105	1	4513200	+		33027	21008	27190	27215	36396	36396					0.06890662496562072
LMAPASRLLA	10	Oxidation (M)	_LM(Oxidation (M))APASRLLA_		LM(1)APASRLLA		LM(82)APASRLLA	0	0	1		ENST00000568689.5_1_16:733170-734340:-|nuORF;ENST00000567120.5_1_16:734232-734409:-|nuORF	ENST00000568689.5_1_16:733170-734340:-|nuORF	ENST00000568689.5_1_16:733170-734340:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	529.8031005859375	2	529.804977	1057.5954	0.35582	0.00018852	1.3613	0.00072122	1.7171	0.00090973	529.8030255036192	105.38	2.0148	104.03	103.57	105.59	-1.3482					144	38	5	0	0	0	0.28845	1	7354	7354		82.241	7.1972	1	4513200			33028	13871	27191	27216	36397	36397		354			0.0689066249658481
LMAPSEEDHS	10	Unmodified	_LMAPSEEDHS_					0	0	0		IGFBP1|p.E218Dfs*36|1|0.15|ENSG00000146678|chr7:45892964-45892971|AGACATCC/-|frameshift_variant;ENSG00000146678|ENST00000275525|IGFBP1	IGFBP1|p.E218Dfs*36|1|0.15|ENSG00000146678|chr7:45892964-45892971|AGACATCC/-|frameshift_variant	IGFBP1|p.E218Dfs*36|1|0.15|ENSG00000146678|chr7:45892964-45892971|AGACATCC/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.2391357421875	2	558.237321	1114.46009	3.1131	0.0017378	3.4697	0.0019369	6.5828	0.0036747	558.2390583607403	130.11	1.3788	128.63	128.27	129.64	-1.4779					62	27	3	0	0	0	0.64063	1	12463	12463		37.159	6.6555	1	202230			33029	5302	27192	27217	36398	36398					-0.09256282155661211
LMAPVPCLP	9	Unmodified	_LMAPVPCLP_					0	0	0		ENST00000462742.1_1_21:45755312-45758250:-|nuORF	ENST00000462742.1_1_21:45755312-45758250:-|nuORF	ENST00000462742.1_1_21:45755312-45758250:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.783447265625	2	470.753367	939.492181	-0.61024	-0.00028727	0.7151	0.00033664	0.10486	4.9365E-05	470.75361342133147	72.915	0.91909	69.519	69.253	70.172	-3.3961					37	18	3	0	0	0	0.027412	1	5618	5618		49.211	0	1	145340			33030	12208	27193	27218	36399	36399					0.02001458784411625
LMAQFNVPL	9	Unmodified	_LMAQFNVPL_					0	0	0			REV__ENSG00000155097|ENST00000518738|ATP6V1C1	REV__ENSG00000155097|ENST00000518738|ATP6V1C1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.7831420898438	2	516.78097	1031.54739	-1.2134	-0.00062705	4.4323	0.0022905	3.219	0.0016635	516.7832068581977	43.462	0.98365	43.462	43.185	44.169	0					75	22	5	0	0	0	0.36502	1	2914	2914		55.504	0.72789	1	2527100	+		33031	20414	27194	27219	36400	36400					0.032875885765406565
LMATKGQKEL	10	Unmodified	_LMATKGQKEL_					0	0	0			REV__tr|A0A553SJ97|A0A553SJ97_NIACICopper-exportingP-typeATPaseOS=NialliacirculansOX=1397GN=CEQ21_16430PE=3SV=1	REV__tr|A0A553SJ97|A0A553SJ97_NIACICopper-exportingP-typeATPaseOS=NialliacirculansOX=1397GN=CEQ21_16430PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	559.8142700195312	2	559.815541	1117.61653	-0.97774	-0.00054735	1.3525	0.00075713	0.37473	0.00020978	559.8160584775942	134.25	2.5628	133.13	132.52	135.08	-1.1226					125	51	4	0	0	0	0.50999	1	10857	10857		52.937	3.7259	1	225320	+		33032	29980	27195	27220	36401	36401					0.06242627805431766
LMATMHVSL	9	Unmodified	_LMATMHVSL_					0	0	0		ENST00000523968.1_1_8:29043965-29102869:-|nuORF	ENST00000523968.1_1_8:29043965-29102869:-|nuORF	ENST00000523968.1_1_8:29043965-29102869:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	501.75848388671875	2	501.759181	1001.50381	2.6521	0.0013307	-3.7593	-0.0018862	-1.1072	-0.00055552	501.75716653820064	89.331	1.3777	89.331	89.043	90.421	0					81	33	4	0	0	0	0.27546	1	9522	9522		65.803	7.9919	1	8951900			33033	13160	27196	27221	36402	36402					0.0031165580775223134
LMAVLLVFV	9	Unmodified	_LMAVLLVFV_					0	0	0		nc|ENSG00000133069|O75069-3|TMCC2;nc|ENSG00000133069|O75069-5|TMCC2;nc|ENSG00000133069|O75069-2|TMCC2;ENSG00000133069|ENST00000358024|TMCC2	nc|ENSG00000133069|O75069-3|TMCC2	nc|ENSG00000133069|O75069-3|TMCC2	MULTI-MSMS	OvCa9_classI_Rep2	2	502.81402587890625	2	502.814282	1003.61401	-4.4511	-0.0022381	4.0456	0.0020342	-0.40549	-0.00020389	502.8162192928447	153.83	1.4178	153.6	153.28	154.7	-0.22696					88	30	4	0	0	0	0.68641	1	15757	15757		21.702	0	1	684970			33034	4196	27197	27222	36403	36403					0.11234824138455224
LMAVMVVLM	9	Unmodified	_LMAVMVVLM_					0	0	0		tr|A0A553SGH4|A0A553SGH4_NIACIBranched-chainaminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_10895PE=3SV=1	tr|A0A553SGH4|A0A553SGH4_NIACIBranched-chainaminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_10895PE=3SV=1	tr|A0A553SGH4|A0A553SGH4_NIACIBranched-chainaminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_10895PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.77801513671875	2	503.778527	1005.5425	-0.53642	-0.00027024	1.0492	0.00052856	0.51277	0.00025832	503.7788775374196	22.106	2.3664	20.768	19.646	22.013	-1.3386					123	57	3	0	0	0	0.70973	1	346	346		14.664	0	1	168480			33035	33158	27198	27223	36404	36404					0.039952451179260606
LMAVTLYEAL	10	Unmodified	_LMAVTLYEAL_					0	0	0			REV__ENSG00000171017|ENST00000306708|LRRC8E	REV__ENSG00000171017|ENST00000306708|LRRC8E	MULTI-MSMS	OvCa9_classI_Rep2	2	562.30908203125	2	562.307018	1122.59948	0.74232	0.00041741	2.2646	0.0012734	3.0069	0.0016908	562.3082366051352	111.6	2.8604	111.46	110.14	113	-0.13961					133	57	4	0	0	0	0.24387	2	10504	10504;10527		87.754	7.1465	1	604240	+		33036	21585	27199	27224	36405;36406	36405					0.0430870719962968
LMAVTLYEAL	10	Unmodified	_LMAVTLYEAL_					0	0	0			REV__ENSG00000171017|ENST00000306708|LRRC8E	REV__ENSG00000171017|ENST00000306708|LRRC8E	MULTI-MSMS	OvCa9_classI_Rep3	3	562.3088989257812	2	562.307018	1122.59948	1.5394	0.00086559	1.2234	0.00068794	2.7628	0.0015535	562.3077246081845	112.34	2.7945	111.26	110.13	112.92	-1.0753					115	55	5	0	0	0	0.33376	3	8195	8189;8195;8218		76.774	9.2805	1	1502900	+		33037	21585	27199	27224	36407;36408;36409	36408					0.0430870719962968
LMAVTLYEAL	10	Unmodified	_LMAVTLYEAL_					0	0	0			REV__ENSG00000171017|ENST00000306708|LRRC8E	REV__ENSG00000171017|ENST00000306708|LRRC8E	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3089599609375	2	562.307018	1122.59948	1.6081	0.00090426	1.0727	0.00060321	2.6809	0.0015075	562.3076275952775	112.77	1.839	111.26	110.53	112.37	-1.5111					103	36	5	0	0	0	0.22395	1	10424	10424		90.777	0.1758	1	1731000	+		33038	21585	27199	27224	36410	36410					0.0430870719962968
LMAYINGLT	9	Unmodified	_LMAYINGLT_					0	0	0			REV__ENSG00000052841|ENST00000039989|TTC17	REV__ENSG00000052841|ENST00000039989|TTC17	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.2966003417969	2	498.265153	994.515753	-0.41722	-0.00020789	-1.9993	-0.00099616	-2.4165	-0.001204	498.2636192890349	77.572	0.67799	74.756	74.536	75.214	-2.8165					28	13	3	0	0	0	0.027448	1	6185	6185		44.117	16.235	1	370060	+		33039	16692	27200	27225	36411	36411					0.018275958226013245
LMCAMRVAPD	10	Carbamidomethyl (C),Oxidation (M)	_LM(Oxidation (M))C(Carbamidomethyl (C))AMRVAPD_	LMC(1)AMRVAPD	LM(1)CAMRVAPD	LMC(69)AMRVAPD	LM(41)CAM(-41)RVAPD	0	1	1		ENST00000035307.6_1_7:150930323-150930443:+|nuORF	ENST00000035307.6_1_7:150930323-150930443:+|nuORF	ENST00000035307.6_1_7:150930323-150930443:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	590.26708984375	2	590.269587	1178.52462	-5.3391	-0.0031515	3.8416	0.0022676	-1.4975	-0.00088392	590.2717322598501	159.2	1.2398	158.97	158.63	159.87	-0.22697					77	24	4	0	0	0	0.3976	1	16174	16174		68.787	15.85	2	170140			33040	9629	27201	27226	36412	36412	97	285			-0.057501218748711835
LMCGRPMGVSP	11	2 Oxidation (M)	_LM(Oxidation (M))CGRPM(Oxidation (M))GVSP_		LM(1)CGRPM(1)GVSP		LM(55)CGRPM(55)GVSP	0	0	2			REV__ENST00000540643.5_2_22:31892283-31892502:+|nuORF	REV__ENST00000540643.5_2_22:31892283-31892502:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	590.2677001953125	2	590.269587	1178.52462	-5.3391	-0.0031515	3.8416	0.0022676	-1.4975	-0.00088392	590.2717322598501	159.2	1.2398	158.97	158.63	159.87	-0.22697					77	24	4	0	0	0	0.48738	1	16186	16186		54.776	6.8168	1	170140	+		33041	27355	27202	27227	36413	36413		607;608			-0.057501218748711835
LMCPEMFI	8	Oxidation (M)	_LMCPEM(Oxidation (M))FI_		LMCPEM(1)FI		LM(-58)CPEM(58)FI	0	0	1		ENST00000430767.8_1_17:75212591-75212765:+|nuORF	ENST00000430767.8_1_17:75212591-75212765:+|nuORF	ENST00000430767.8_1_17:75212591-75212765:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.2962646484375	2	500.221042	998.427532	-1.171	-0.00058576	4.1712	0.0020865	3.0002	0.0015008	500.22283643063594	87.271	1.281	85.094	84.734	86.015	-2.1768					49	24	3	0	0	0	0.028476	1	5329	5329		83.287	26.566	2	148270			33042	11792	27203	27228	36414	36414		324			-0.07174484083873267
LMDASHASAG	10	Unmodified	_LMDASHASAG_					0	0	0			REV__ENST00000595844.5_1_19:12787852-12790977:-|nuORF	REV__ENST00000595844.5_1_19:12787852-12790977:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.21368408203125	2	480.216192	958.41783	0.24514	0.00011772	-4.4633	-0.0021434	-4.2182	-0.0020257	480.21394506896644	112.48	1.4516	110.97	110.63	112.08	-1.5111					63	28	3	0	0	0	0.58282	1	10400	10400		44.117	0.49075	1	579150	+		33043	27992	27204	27229	36415	36415					-0.06304212773397921
LMDDGLNPM	9	Oxidation (M)	_LM(Oxidation (M))DDGLNPM_		LM(1)DDGLNPM		LM(44)DDGLNPM(-44)	0	0	1			REV__SORBS2|p.E881Dfs*37|1|0.67|ENSG00000154556|chr4:185615156-185615156|C/-|frameshift_variant	REV__SORBS2|p.E881Dfs*37|1|0.67|ENSG00000154556|chr4:185615156-185615156|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	511.220703125	2	511.220085	1020.42562	1.1854	0.00060598	-1.6022	-0.00081907	-0.41682	-0.00021309	511.21914277262067	138.94	1.573	138.94	138.64	140.22	0					62	32	3	0	0	0	0.31747	1	16205	16205		60.972	11.53	2	545500	+		33044	20388	27205	27230	36416	36416		477			-0.08377821568137733
LMDDGSVKS	9	Unmodified	_LMDDGSVKS_					0	0	0			REV__tr|A0A7D6VRA1|A0A7D6VRA1_9CLOTCarboxypeptidaseregulatory-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18615PE=3SV=1	REV__tr|A0A7D6VRA1|A0A7D6VRA1_9CLOTCarboxypeptidaseregulatory-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18615PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	476.2276306152344	2	476.226225	950.437897	1.7251	0.00082156	0.98426	0.00046873	2.7094	0.0012903	476.2266284261182	110.02	0.67474	110.02	109.77	110.45	0					27	14	3	0	0	0	0.51865	1	12481	12481		40.778	0	1	507540	+		33045	31398	27206	27231	36417	36417					-0.03930461833431309
LMDHTIPEV	9	Unmodified	_LMDHTIPEV_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	OvCa99_classI_Rep5	1	527.7675170898438	2	527.765517	1053.51648	2.4126	0.0012733	-0.17798	-9.3933E-05	2.2346	0.0011793	527.7653743143986	90.343	1.9456	90.343	89.933	91.879	0					89	47	4	0	0	0	0.11171	1	9694	9694		94.006	28.203	1	17833000			33046	4601	27207	27232	36418	36418					-0.008136095283589384
LMDHTIPEV	9	Unmodified	_LMDHTIPEV_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.7662963867188	2	527.765517	1053.51648	-1.6189	-0.00085438	1.2852	0.00067829	-0.33365	-0.00017609	527.7660357679764	92.794	1.0039	90.287	89.959	90.963	-2.5072					54	19	3	0	0	0	0.071436	2	8079	8067;8079		106.42	21.056	1	833070			33047	4601	27207	27232	36419;36420	36420					-0.008136095283589384
LMDHTIPEV	9	Unmodified	_LMDHTIPEV_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	527.765517	1053.51648	0.55772	0.00029434	-0.63663	-0.00033599	-0.078914	-4.1648E-05	527.7649905671503	91.605	1.4751	90.369	90.007	91.483	-1.2355	0.036197	-0.00060709	NaN	106.42	64	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	453710			33048	4601	27207	27232							-0.008136095283589384
LMDKKCLND	9	Unmodified	_LMDKKCLND_					0	0	0			REV__ENST00000334529.9_1_3:112183272-112183371:-|nuORF	REV__ENST00000334529.9_1_3:112183272-112183371:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.2616577148438	2	540.264827	1078.5151	-0.37429	-0.00020222	-1.8031	-0.00097417	-2.1774	-0.0011764	540.2636864762645	142	0.99675	140.54	140.24	141.23	-1.4627					44	18	3	0	0	0	0.55011	1	13891	13891		37.812	3.639	1	101160	+		33049	24569	27208	27233	36421	36421					-0.021015668887685024
LMDTLNRMGKG	11	Unmodified	_LMDTLNRMGKG_					0	0	0		ENST00000480733.1_1_3:136323173-136342079:-|nuORF	ENST00000480733.1_1_3:136323173-136342079:-|nuORF	ENST00000480733.1_1_3:136323173-136342079:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	618.3155517578125	2	618.315383	1234.61621	0.3168	0.00019588	-2.908	-0.001798	-2.5912	-0.0016022	618.3135013937338	64.547	1.4051	61.062	60.822	62.227	-3.4854					76	28	4	0	0	0	0.16394	1	4600	4600		58.23	8.6939	1	1008500			33050	12535	27209	27234	36422	36422					0.008288848139272886
LMDVPSREVCS	11	Unmodified	_LMDVPSREVCS_					0	0	0		ENST00000262158.6_1_18:46447112-46447352:-|nuORF	ENST00000262158.6_1_18:46447112-46447352:-|nuORF	ENST00000262158.6_1_18:46447112-46447352:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.8996887207031	3	412.530141	1234.56859	0.59478	0.00024537	-1.3061	-0.00053882	-0.71136	-0.00029346	412.86501670286907	41.256	0.22633	41.256	41.104	41.33	0					7	4	2	0	0	0	0.025864	1	2566	2566		35.178	10.11	1	13092			33051	9883	27210	27235	36423	36423					-0.03930814176897002
LMEDLDRN	8	Oxidation (M)	_LM(Oxidation (M))EDLDRN_		LM(1)EDLDRN		LM(80)EDLDRN	0	0	1		ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	ENSG00000197956|ENST00000368719|S100A6	MULTI-MSMS	OvCa99_classI_Rep5	1	511.2370300292969	2	511.234581	1020.45461	1.4074	0.0007195	4.015	0.0020526	5.4224	0.0027721	511.2366583515208	123.22	0.96806	123.22	122.95	123.92	0					37	20	3	0	0	0	0.47599	1	14187	14187		79.939	13.51	1	517800			33052	8767	27211	27236	36424	36424		267			-0.054799609475026045
LMEEVHMIK	9	2 Oxidation (M)	_LM(Oxidation (M))EEVHM(Oxidation (M))IK_		LM(1)EEVHM(1)IK		LM(59)EEVHM(59)IK	0	0	2		nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5;ENST00000437205.5_1_3:183639090-183689734:-|nuORF	nc|ENSG00000114770|O15440-5|ABCC5	nc|ENSG00000114770|O15440-5|ABCC5	MULTI-MSMS	OvCa99_classI_Rep5	1	581.2850952148438	2	581.28576	1160.55697	-0.31382	-0.00018242	-0.36541	-0.00021241	-0.67923	-0.00039483	581.2852827477743	32.242	0.49717	32.242	32.055	32.553	0					28	9	4	0	0	0	0.33652	1	1386	1386		58.782	14.665	1	145820			33053	3040	27212	27237	36425	36425		97;98			-0.01689011200232926
LMEFNYKE	8	Unmodified	_LMEFNYKE_					0	0	0			REV__ENST00000486256.5_1_7:6777424-6791020:+|nuORF	REV__ENST00000486256.5_1_7:6777424-6791020:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.8201904296875	2	537.252243	1072.48993	2.1161	0.0011369	-2.6328	-0.0014145	-0.51664	-0.00027757	537.250701425981	118	0.45921	118	117.7	118.16	0					14	9	2	0	0	0	0.028476	1	13502	13502		29.15	0	1	160670	+		33054	18603	27213	27238	36426	36426					-0.04341298419717532
LMEHIHKL	8	Unmodified	_LMEHIHKL_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENSG00000108298|ENST00000225430|RPL19;ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	OvCa99_classI_Rep5	1	510.78759765625	2	510.786587	1019.55862	0.24473	0.00012501	-0.22499	-0.00011492	0.01974	1.0083E-05	510.78632509796256	62.896	2.0888	62.896	62.621	64.71	0					115	51	3	0	0	0	0.20102	2	5626	5626;5657		124.59	33.655	1	7478400			33055	2643;11815	27214	27239	36427;36428	36427					0.0496241067066876
LMEHQLTATK	10	Unmodified	_LMEHQLTATK_					0	0	0		ABCC10|p.G529E|1|0.5|ENSG00000124574|chr6:43434826-43434826|G/A|missense_variant	ABCC10|p.G529E|1|0.5|ENSG00000124574|chr6:43434826-43434826|G/A|missense_variant	ABCC10|p.G529E|1|0.5|ENSG00000124574|chr6:43434826-43434826|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	586.3132934570312	2	586.310623	1170.60669	2.8796	0.0016884	0.39248	0.00023012	3.2721	0.0019185	586.3107516361531	26.153	0.76175	23.443	23.311	24.073	-2.7097					35	18	3	0	0	0	0.69073	1	331	331		31.53	2.3803	1	95087			33056	3	27215	27240	36429	36429					0.028214398000500296
LMEKNKEPL	9	Unmodified	_LMEKNKEPL_					0	0	0			REV__ENSG00000071205|ENST00000336498|ARHGAP10	REV__ENSG00000071205|ENST00000336498|ARHGAP10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.7883911132812	2	551.302267	1100.58998	0.46586	0.00025683	-2.3895	-0.0013173	-1.9236	-0.0010605	551.3017817987102	111.32	1.0001	109.81	109.42	110.42	-1.5111					33	18	3	0	0	0	0.027432	1	10323	10323		58.23	27.912	1	31713	+		33057	16900	27216	27241	36430	36430					0.04370938914121325
LMELNRVQ	8	Unmodified	_LMELNRVQ_					0	0	0		LMTK2|p.G659R|1|0.18|ENSG00000164715|chr7:98192440-98192440|G/A|missense_variant	LMTK2|p.G659R|1|0.18|ENSG00000164715|chr7:98192440-98192440|G/A|missense_variant	LMTK2|p.G659R|1|0.18|ENSG00000164715|chr7:98192440-98192440|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.7602844238281	2	501.773677	1001.5328	-0.6669	-0.00033463	-3.0545	-0.0015327	-3.7214	-0.0018673	501.7723467998252	65.527	0.31569	65.527	65.231	65.546	0					10	7	2	0	0	0	0.028476	1	6022	6022		44.117	0	1	1902500			33058	14799	27217	27242	36431	36431					0.03209516428398729
LMELYKVI	8	Unmodified	_LMELYKVI_					0	0	0		nc|ENSG00000143493|Q9NVH2-4|INTS7;nc|ENSG00000143493|Q9NVH2-3|INTS7;nc|ENSG00000143493|Q9NVH2-2|INTS7;ENSG00000143493|ENST00000366994|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	MULTI-MSMS	OvCa9_classI_Rep2	2	504.79461669921875	2	504.793546	1007.57254	0.445	0.00022464	2.8968	0.0014623	3.3418	0.0016869	504.7948322136319	66.035	1.3924	63.339	62.821	64.213	-2.6958					74	27	4	0	0	0	0.57878	1	5113	5113		68.485	2.5872	1	580190			33059	5062	27218	27243	36432	36432					0.06905643379104731
LMESEVNLN	9	Unmodified	_LMESEVNLN_					0	0	0		DMD|p.D342N|1|0.19|ENSG00000198947|chrX:32645089-32645089|C/T|missense_variant	DMD|p.D342N|1|0.19|ENSG00000198947|chrX:32645089-32645089|C/T|missense_variant	DMD|p.D342N|1|0.19|ENSG00000198947|chrX:32645089-32645089|C/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7728271484375	2	524.752607	1047.49066	2.2336	0.0011721	-0.21841	-0.00011461	2.0152	0.0010575	524.7522426843456	86.616	0.86768	86.616	86.389	87.257	0					31	20	2	0	0	0	0.027433	1	9223	9223		71.296	18.359	1	723180			33060	742	27219	27244	36433	36433					-0.031185037706336516
LMESLRRL	8	Unmodified	_LMESLRRL_					0	0	0		ENST00000477196.5_1_1:1025937-1026315:-|nuORF	ENST00000477196.5_1_1:1025937-1026315:-|nuORF	ENST00000477196.5_1_1:1025937-1026315:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	509.2975158691406	2	509.297319	1016.58008	1.6928	0.00086211	-2.6272	-0.001338	-0.93443	-0.0004759	509.29575243446214	111.07	0.89133	111.07	110.71	111.6	0					36	18	3	0	0	0	0.32444	1	12620	12620		102.77	1.5618	1	894750			33061	12475	27220	27245	36434	36434					0.07245795699407154
LMFHDKTI	8	Unmodified	_LMFHDKTI_					0	0	0			REV__nc|ENSG00000005700|Q9P2D0-2|IBTK	REV__nc|ENSG00000005700|Q9P2D0-2|IBTK	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.2705383300781	2	502.76532	1003.51609	1.9245	0.00096757	-0.43833	-0.00022038	1.4862	0.00074719	503.2664194451525	90.501	0.75386	90.501	90.382	91.135	0					21	18	2	0	0	0	0.028476	1	9793	9793		30.504	0	1	381890	+		33062	24946	27221	27246	36435	36435					0.014470155424533004
LMFLPPVVL	9	Unmodified	_LMFLPPVVL_					0	0	0		ENSG00000137103|ENST00000643932|TMEM8B;nc|ENSG00000137103|A6NDV4-3|TMEM8B;nc|ENSG00000137103|A6NDV4-2|TMEM8B;nc|ENSG00000137103|A6NDV4|TMEM8B	ENSG00000137103|ENST00000643932|TMEM8B	ENSG00000137103|ENST00000643932|TMEM8B	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.81494140625	2	514.814282	1027.61401	-0.32798	-0.00016885	3.9223	0.0020192	3.5943	0.0018504	514.8161006739908	128.1	1.7242	126.66	126.04	127.76	-1.4357					85	33	4	0	0	0	0.53728	1	12251	12251		39.021	1.8624	1	358610			33063	4558	27222	27247	36436	36436					0.1013082413844586
LMFMACML	8	Unmodified	_LMFMACML_					0	0	0			REV__tr|A0A7D6ZZF8|A0A7D6ZZF8_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20180PE=4SV=1	REV__tr|A0A7D6ZZF8|A0A7D6ZZF8_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20180PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	480.2147521972656	2	480.214706	958.414859	0.0824	3.957E-05	-0.80663	-0.00038736	-0.72423	-0.00034779	480.21418147618385	111.38	1.4293	111.24	110.73	112.16	-0.13961					75	28	4	0	0	0	0.69862	1	10507	10507		43.626	8.4253	1	270160	+		33064	32408	27223	27248	36437	36437					-0.06601218747778148
LMFMHLSP	8	Unmodified	_LMFMHLSP_					0	0	0		ENSG00000198886|ENST00000361381|MT-ND4	ENSG00000198886|ENST00000361381|MT-ND4	ENSG00000198886|ENST00000361381|MT-ND4	MULTI-MSMS	OvCa99_classI_Rep5	1	488.24884033203125	2	488.243166	974.47178	0.8378	0.00040905	2.626	0.0012821	3.4638	0.0016912	488.24476517089505	157.04	0.75136	157.04	156.6	157.35	0					35	14	3	0	0	0	0.73288	1	18425	18425		35.201	3.6709	1	22284			33065	8899	27224	27249	36438	36438					-0.016477118753982722
LMFVMSRLP	9	Unmodified	_LMFVMSRLP_					0	0	0			REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	547.2986450195312	2	547.298473	1092.58239	2.1336	0.0011677	-1.2796	-0.00070034	0.85401	0.0004674	547.297695088243	82.648	0.72778	82.648	82.307	83.035	0					47	16	4	0	0	0	0.56889	1	8576	8576		35.618	0	1	1275800	+		33066	18180	27225	27250	36439	36439					0.03980508112840653
LMFWGRVRSDR	11	Unmodified	_LMFWGRVRSDR_					0	0	0			REV__ENSG00000197977|ENST00000354666|ELOVL2	REV__ENSG00000197977|ENST00000354666|ELOVL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	474.270263671875	3	474.918951	1421.73502	-0.028507	-1.3539E-05	2.314	0.0010989	2.2854	0.0010854	474.91995414163637	40.191	0.88251	37.237	37.062	37.945	-2.9541					51	16	4	0	0	0	0.026383	1	1787	1787		2.8518	0	1	205230	+		33067	22975	27226	27251	36440	36440					0.04102419833816384
LMGFVEYSPL	10	Unmodified	_LMGFVEYSPL_					0	0	0		tr|A0A553SGS8|A0A553SGS8_NIACICPBPfamilyintramembranemetalloproteaseOS=NialliacirculansOX=1397GN=CEQ21_11410PE=4SV=1	tr|A0A553SGS8|A0A553SGS8_NIACICPBPfamilyintramembranemetalloproteaseOS=NialliacirculansOX=1397GN=CEQ21_11410PE=4SV=1	tr|A0A553SGS8|A0A553SGS8_NIACICPBPfamilyintramembranemetalloproteaseOS=NialliacirculansOX=1397GN=CEQ21_11410PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.288818359375	2	578.291368	1154.56818	-6.4834	-0.0037493	2.5464	0.0014725	-3.937	-0.0022767	578.2924756503293	159.15	2.0345	157.57	156.14	158.17	-1.5858					77	57	2	0	0	0	0.75594	1	15640	15640		24.203	1.1603	1	24594			33068	33191	27227	27252	36441	36441					-0.0029186583444698044
LMGLGKKGNL	10	Unmodified	_LMGLGKKGNL_					0	0	0		ENST00000578904.1_1_17:80208040-80213403:-|nuORF;ENST00000584377.5_1_17:80203885-80211156:-|nuORF;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENSG00000213923|ENST00000396832|CSNK1E;WDR45L-CSNK1D|1|fusion;WDR45L-CSNK1D|2|fusion	ENST00000578904.1_1_17:80208040-80213403:-|nuORF	ENST00000578904.1_1_17:80208040-80213403:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2695922851562	2	515.807519	1029.60049	1.9493	0.0010055	-3.6478	-0.0018815	-1.6984	-0.00087606	515.8053828967735	86.968	0.57658	86.968	86.801	87.378	0					34	13	4	0	0	0	0.026688	1	9172	9172		32.812	0.85756	1	1857400			33069	4925	27228	27253	36442	36442					0.08686966359209691
LMGPGAARI	9	Unmodified	_LMGPGAARI_					0	0	0			REV__ENST00000465070.5_1_2:145271084-145271330:-|nuORF	REV__ENST00000465070.5_1_2:145271084-145271330:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	442.6016540527344	2	443.25238	884.490207	0.52223	0.00023148	-0.069294	-3.0715E-05	0.45294	0.00020077	443.25256218172626	50.377	0.39783	47.583	47.331	47.729	-2.794					11	7	2	0	0	0	0.027462	1	3229	3229		37.028	0	1	4339.7	+		33070	26162	27229	27254	36443	36443					0.0433416609082542
LMGRYDVI	8	Unmodified	_LMGRYDVI_					0	0	0			REV__nc|ENSG00000163395|Q86VF2-4|IGFN1	REV__nc|ENSG00000163395|Q86VF2-4|IGFN1	MULTI-MSMS	OvCa99_classI_Rep5	1	483.7584228515625	2	483.757495	965.500437	1.962	0.00094913	1.0435	0.00050481	3.0055	0.0014539	483.7578813593578	134.17	0.42653	134.17	133.91	134.34	0					20	8	3	0	0	0	0.62934	1	15606	15606		57.811	2.3071	1	298940	+		33071	20833	27230	27255	36444	36444					0.016307290253848805
LMGRYDVI	8	Unmodified	_LMGRYDVI_					0	0	0			REV__nc|ENSG00000163395|Q86VF2-4|IGFN1	REV__nc|ENSG00000163395|Q86VF2-4|IGFN1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	483.757495	965.500437	1.962	0.00094913	1.0435	0.00050481	3.0055	0.0014539	483.7578813593578	134.17	0.42653	134.17	133.91	134.34	0	0	0	NaN	57.811	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	298940	+		33072	20833	27230	27255							0.016307290253848805
LMHAAMQQPI	10	Oxidation (M)	_LM(Oxidation (M))HAAMQQPI_		LM(0.979)HAAM(0.021)QQPI		LM(17)HAAM(-17)QQPI	0	0	1			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.2880859375	2	578.286094	1154.55763	2.6605	0.0015385	2.8958	0.0016746	5.5562	0.0032131	578.2875433162809	133.74	3.4984	132.22	131.46	134.96	-1.5257					171	70	3	0	0	0	0.49049	1	12981	12981		55.504	6.0627	2	165290	+		33073	19860	27231	27256	36445	36445		457			-0.013461717605423473
LMHAKYKIDD	10	Unmodified	_LMHAKYKIDD_					0	0	0			REV__nc|ENSG00000183091|P20929-4|NEB	REV__nc|ENSG00000183091|P20929-4|NEB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	411.23626708984375	3	411.881391	1232.62234	0.7199	0.00029651	-4.2987	-0.0017705	-3.5788	-0.001474	411.87947943623413	57.225	1.1204	53.88	53.527	54.647	-3.3449					31	21	2	0	0	0	0.027117	1	3669	3669		21.686	1.6553	1	19719	+		33074	22341	27232	27257	36446	36446					0.01533726317120454
LMHEGQLLQ	9	Unmodified	_LMHEGQLLQ_					0	0	0			REV__nc|ENSG00000091157|Q9Y4E6-2|WDR7	REV__nc|ENSG00000091157|Q9Y4E6-2|WDR7	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.8314208984375	2	534.778959	1067.54336	1.3985	0.0007479	-2.179	-0.0011653	-0.78044	-0.00041736	534.7777166906749	103.16	0.79402	103.16	102.89	103.69	0					38	18	4	0	0	0	0.027185	1	11573	11573		93.195	30.217	1	1812800	+		33075	17245	27233	27258	36447	36447					0.012294990828195296
LMHRYHSPV	9	Oxidation (M)	_LM(Oxidation (M))HRYHSPV_		LM(1)HRYHSPV		LM(63)HRYHSPV	0	0	1		ENST00000586495.1_1_17:73872946-73873276:-|nuORF	ENST00000586495.1_1_17:73872946-73873276:-|nuORF	ENST00000586495.1_1_17:73872946-73873276:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2910766601562	2	578.290025	1154.5655	-1.351	-0.00078126	0.48028	0.00027774	-0.8707	-0.00050352	578.2900356526777	133.55	3.1988	132.42	131.63	134.83	-1.1249					151	64	4	0	0	0	0.29717	1	10722	10722		63.306	7.8021	1	94067			33076	14045	27234	27259	36448	36448		355			-0.0056027644877758576
LMHRYHSPV	9	Oxidation (M)	_LM(Oxidation (M))HRYHSPV_		LM(1)HRYHSPV		LM(58)HRYHSPV	0	0	1		ENST00000586495.1_1_17:73872946-73873276:-|nuORF	ENST00000586495.1_1_17:73872946-73873276:-|nuORF	ENST00000586495.1_1_17:73872946-73873276:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.2886962890625	2	578.290025	1154.5655	2.6604	0.0015385	-3.9024	-0.0022567	-1.2419	-0.00071819	578.2875433162809	133.74	3.4984	132.22	131.46	134.96	-1.5257					171	70	3	0	0	0	0.34496	1	12968	12968		57.811	8.3697	1	165290			33077	14045	27234	27259	36449	36449		355			-0.0056027644877758576
LMHYKEAI	8	Oxidation (M)	_LM(Oxidation (M))HYKEAI_		LM(1)HYKEAI		LM(80)HYKEAI	0	0	1		nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT	nc|ENSG00000147162|O15294-2|OGT	nc|ENSG00000147162|O15294-2|OGT	MULTI-MSMS	OvCa99_classI_Rep5	1	510.76141357421875	2	510.762778	1019.511	1.3202	0.0006743	-2.4123	-0.0012321	-1.0921	-0.00055783	510.76137235046724	111.43	0.9123	111.43	111.2	112.11	0					43	19	4	0	0	0	0.47599	1	12668	12668		79.939	11.152	1	670670			33078	5337	27235	27260	36450	36450		175			0.002027116798331008
LMIHRPLF	8	Oxidation (M)	_LM(Oxidation (M))IHRPLF_		LM(1)IHRPLF		LM(57)IHRPLF	0	0	1			REV__ENST00000457361.5_1_2:213871796-213871853:-|nuORF	REV__ENST00000457361.5_1_2:213871796-213871853:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	521.8001708984375	2	521.796955	1041.57936	0.7122	0.00037162	3.5382	0.0018462	4.2504	0.0022178	521.798133945385	124.62	1.1845	124.39	124.03	125.21	-0.23193					47	23	3	0	0	0	0.63104	1	12113	12113		57.453	9.7953	1	135240	+		33079	26043	27236	27261	36451	36451		585			0.06023001050334642
LMIKKYIID	9	Unmodified	_LMIKKYIID_					0	0	0		tr|A0A7D6VMU2|A0A7D6VMU2_9CLOTHeat-inducibletranscriptionrepressorHrcAOS=ClostridiumintestinaleOX=36845GN=hrcAPE=3SV=1	tr|A0A7D6VMU2|A0A7D6VMU2_9CLOTHeat-inducibletranscriptionrepressorHrcAOS=ClostridiumintestinaleOX=36845GN=hrcAPE=3SV=1	tr|A0A7D6VMU2|A0A7D6VMU2_9CLOTHeat-inducibletranscriptionrepressorHrcAOS=ClostridiumintestinaleOX=36845GN=hrcAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	568.8426513671875	2	568.841028	1135.6675	1.593	0.00090619	-3.1295	-0.0017802	-1.5364	-0.00087398	568.8390639178118	130.34	1.0489	130.34	129.91	130.96	0					65	21	4	0	0	0	0.091859	1	15095	15095		99.375	5.3685	1	771350			33080	34670	27237	27262	36452	36452					0.10509576850313351
LMINMLLPGM	10	Oxidation (M)	_LMINM(Oxidation (M))LLPGM_		LMINM(1)LLPGM		LM(-56)INM(47)LLPGM(-47)	0	0	1			REV__tr|A0A553SLM6|A0A553SLM6_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_20910PE=3SV=1	REV__tr|A0A553SLM6|A0A553SLM6_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_20910PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	574.8004760742188	2	574.797449	1147.58034	3.1892	0.0018331	2.5034	0.001439	5.6926	0.0032721	574.7987973401441	133.16	1.2243	131.64	131.36	132.59	-1.5257					61	24	4	0	0	0	0.26259	2	12841	12841;12866		85.359	15.649	3	206990	+		33081	30240	27238	27263	36453;36454	36453		663			0.012457113127311459
LMIPAPPCRA	10	Unmodified	_LMIPAPPCRA_					0	0	0		ENST00000380752.9_1_13:30085169-30085490:-|nuORF	ENST00000380752.9_1_13:30085169-30085490:-|nuORF	ENST00000380752.9_1_13:30085169-30085490:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.3079833984375	2	534.788272	1067.56199	2.1011	0.0011237	3.3298	0.0017807	5.4309	0.0029044	534.7895821545876	100.37	0.3381	100.37	100.15	100.49	0					13	7	2	0	0	0	0.026822	1	11134	11134		30.504	7.4612	1	547970			33082	11150	27239	27264	36455	36455					0.030913374530427973
LMIPVVSYI	9	Unmodified	_LMIPVVSYI_					0	0	0			REV__LAMA2|p.K2491Lfs*57|1|0.05|ENSG00000196569|chr6:129478711-129478712|-/CT|frameshift_variant	REV__LAMA2|p.K2491Lfs*57|1|0.05|ENSG00000196569|chr6:129478711-129478712|-/CT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	517.8001098632812	2	517.801371	1033.58819	0.027144	1.4055E-05	-2.2192	-0.0011491	-2.1921	-0.0011351	517.7997873778041	162.53	0.2025	162.53	162.43	162.63	0					9	5	2	0	0	0	0.53957	1	19064	19064		38.806	0	1	69998	+		33083	28612	27240	27265	36456	36456					0.07273929896155096
LMIQLLPD	8	Unmodified	_LMIQLLPD_					0	0	0		ENST00000432460.1_3_2:219523523-219523947:-|nuORF	ENST00000432460.1_3_2:219523523-219523947:-|nuORF	ENST00000432460.1_3_2:219523523-219523947:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.7725830078125	2	471.770071	941.52559	0.70033	0.0003304	3.1416	0.0014821	3.842	0.0018125	471.77151465294384	65.014	2.1826	61.528	60.872	63.054	-3.4854					101	44	4	0	0	0	0.36941	1	4696	4696		94.006	5.3636	1	2027800			33084	11812	27241	27266	36457	36457					0.05248783827960324
LMIRAFRECL	10	Unmodified	_LMIRAFRECL_					0	0	0			REV__ENSG00000155313|ENST00000400183|USP25	REV__ENSG00000155313|ENST00000400183|USP25	MULTI-MSMS	OvCa9_classI_Rep2	2	626.338623046875	2	626.338661	1250.66277	-0.68265	-0.00042757	-0.046681	-2.9238E-05	-0.72934	-0.00045681	626.338481713203	123.13	1.2816	122.91	122.51	123.79	-0.21803					72	25	4	0	0	0	0.71173	1	11938	11938		29.17	0	1	275140	+		33085	20420	27242	27267	36458	36458					0.04746369435906672
LMITILILQ	9	Unmodified	_LMITILILQ_					0	0	0			REV__tr|A0A553SP29|A0A553SP29_NIACIDUF3899domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_25650PE=4SV=1	REV__tr|A0A553SP29|A0A553SP29_NIACIDUF3899domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_25650PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	529.3333740234375	2	529.338121	1056.66169	-1.2215	-0.00064657	-4.0962	-0.0021683	-5.3177	-0.0028149	529.3357853309486	57.37	1.1974	54.578	54.328	55.525	-2.792					51	23	4	0	0	0	0.35444	1	4097	4097		56.721	5.3856	1	155790	+		33086	30482	27243	27268	36459	36459					0.13562478338644723
LMIVGGIYVL	10	Unmodified	_LMIVGGIYVL_					0	0	0			REV__ENSG00000274386|ENST00000637012|TMEM269	REV__ENSG00000274386|ENST00000637012|TMEM269	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.779052734375	2	539.322471	1076.63039	-0.25646	-0.00013831	3.1218	0.0016837	2.8653	0.0015453	539.3241429391054	56.2	0.52706	56.2	56.011	56.538	0					22	12	2	0	0	0	0.027007	1	4632	4632		12.959	0	1	534170	+		33087	23622	27244	27269	36460	36460					0.09513905304561376
LMIVILGFV	9	Unmodified	_LMIVILGFV_					0	0	0		tr|A0A7D6VRH3|A0A7D6VRH3_9CLOTBifunctionaldiguanylatecyclase/phosphodiesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_05565PE=4SV=1	tr|A0A7D6VRH3|A0A7D6VRH3_9CLOTBifunctionaldiguanylatecyclase/phosphodiesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_05565PE=4SV=1	tr|A0A7D6VRH3|A0A7D6VRH3_9CLOTBifunctionaldiguanylatecyclase/phosphodiesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_05565PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	502.8131103515625	2	502.814282	1003.61401	-4.4511	-0.0022381	4.0456	0.0020342	-0.40549	-0.00020389	502.8162192928447	153.83	1.4178	153.6	153.28	154.7	-0.22696					88	30	4	0	0	0	0.68641	1	15693	15693		21.702	0	1	684970			33088	34932	27245	27270	36461	36461					0.11234824138455224
LMKAGPLS	8	Unmodified	_LMKAGPLS_					0	0	0		HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|331|3|anti-sense	HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|331|3|anti-sense	HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|331|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.75067138671875	2	408.736031	815.45751	0.57566	0.00023529	3.8898	0.0015899	4.4654	0.0018252	408.73764791666093	33.8	0.68224	33.8	33.335	34.017	0					19	13	2	0	0	0	0.028476	1	1562	1562		42.474	0	1	118310			33089	14455	27246	27271	36462	36462					0.0423995896796896
LMKGFYEIF	9	Unmodified	_LMKGFYEIF_					0	0	0			REV__ENST00000506919.1_1_4:146560261-146567442:+|nuORF	REV__ENST00000506919.1_1_4:146560261-146567442:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	574.2950439453125	2	574.296453	1146.57835	0.86664	0.00049771	-4.3184	-0.00248	-3.4518	-0.0019823	574.2935699294472	131.39	1.5467	131.39	130.96	132.51	0					48	32	2	0	0	0	0.19758	1	15276	15276		76.774	7.9873	1	292960	+		33090	20241	27247	27272	36463	36463					0.010927418907613173
LMKKETHVF	9	Unmodified	_LMKKETHVF_					0	0	0		ENSG00000177483|ENST00000316997|RBM44	ENSG00000177483|ENST00000316997|RBM44	ENSG00000177483|ENST00000316997|RBM44	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.2901611328125	2	566.812802	1131.61105	2.1218	0.0012027	-2.5512	-0.0014461	-0.4294	-0.00024339	566.8111472182941	128.49	0.51669	128.49	128.28	128.79	0					17	10	2	0	0	0	0.027441	1	14890	14890		32.812	17.171	1	100720			33091	7688	27248	27273	36464	36464					0.05050949013616446
LMKKTKQTI	9	Unmodified	_LMKKTKQTI_					0	0	0		ENSG00000110395|ENST00000264033|CBL	ENSG00000110395|ENST00000264033|CBL	ENSG00000110395|ENST00000264033|CBL	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.8129272460938	2	545.836277	1089.658	-0.082668	-4.5123E-05	-3.6166	-0.0019741	-3.6993	-0.0020192	545.8343408231996	72.946	0.71329	72.946	72.645	73.359	0					52	17	5	0	0	0	0.027455	1	7183	7183		51.335	9.9088	1	2455700			33092	2771	27249	27274	36465	36465					0.11675808564791623
LMKLLPPPI	9	Unmodified	_LMKLLPPPI_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	OvCa9_classI_Rep2	2	511.3267822265625	2	511.327556	1020.64056	-3.9215	-0.0020052	3.4915	0.0017853	-0.43005	-0.0002199	511.32921715256015	153.82	1.2958	153.59	153.28	154.58	-0.22696					76	27	4	0	0	0	0.71234	1	15632	15632		13.775	0.81615	1	348680			33093	7583	27250	27275	36466	36466					0.13106513029754296
LMKLRSSH	8	Unmodified	_LMKLRSSH_					0	0	0		ENST00000326965.6_1_6:159462524-159465214:-|nuORF	ENST00000326965.6_1_6:159462524-159465214:-|nuORF	ENST00000326965.6_1_6:159462524-159465214:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.29296875	2	486.276386	970.53822	-1.4572	-0.0007086	0.69043	0.00033574	-0.76677	-0.00037286	486.27696714051456	82.584	0.44212	80.288	79.988	80.431	-2.2963					12	8	2	0	0	0	0.028476	1	4671	4671		33.516	0	1	18987			33094	10411	27251	27276	36467	36467					0.051772400108689
LMKLTPEKV	9	Unmodified	_LMKLTPEKV_					0	0	0		ENSG00000121957|ENST00000264126|GPSM2	ENSG00000121957|ENST00000264126|GPSM2	ENSG00000121957|ENST00000264126|GPSM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.28076171875	2	529.817553	1057.62055	0.95513	0.00050605	-4.2082	-0.0022296	-3.253	-0.0017235	529.8166509155836	156.69	0.20111	156.69	156.55	156.75	0					5	3	2	0	0	0	0.027462	1	18355	18355		24.519	9.6543	1	10460			33095	3508	27252	27277	36468	36468					0.0940471729913952
LMKMVAENAGG	11	Unmodified	_LMKMVAENAGG_					0	0	0			REV__tr|A0A553SK39|A0A553SK39_NIACICitratesynthaseOS=NialliacirculansOX=1397GN=citZPE=3SV=1	REV__tr|A0A553SK39|A0A553SK39_NIACICitratesynthaseOS=NialliacirculansOX=1397GN=citZPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	560.7799682617188	2	560.778102	1119.54165	1.9751	0.0011076	0.86049	0.00048254	2.8356	0.0015902	560.7779905862091	119.16	0.60426	119.16	118.86	119.47	0					29	12	3	0	0	0	0.25285	1	13659	13659		72.879	3.2516	1	265800	+		33096	30073	27253	27278	36469	36469					-0.013338779974674253
LMKMVAENAGG	11	Unmodified	_LMKMVAENAGG_					0	0	0			REV__tr|A0A553SK39|A0A553SK39_NIACICitratesynthaseOS=NialliacirculansOX=1397GN=citZPE=3SV=1	REV__tr|A0A553SK39|A0A553SK39_NIACICitratesynthaseOS=NialliacirculansOX=1397GN=citZPE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	560.778102	1119.54165	1.9751	0.0011076	0.86049	0.00048254	2.8356	0.0015902	560.7779905862091	119.16	0.60426	119.16	118.86	119.47	0	0	0	NaN	72.879	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265800	+		33097	30073	27253	27278							-0.013338779974674253
LMKQEFNK	8	Unmodified	_LMKQEFNK_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.8422241210938	2	519.276052	1036.53755	-0.89551	-0.00046502	-3.2884	-0.0017076	-4.1839	-0.0021726	519.7769258507684	101.18	1.0396	100.42	99.973	101.01	-0.764					33	20	2	0	0	0	0.028476	1	9288	9288		55.504	0	1	32027	+		33098	23506	27254	27279	36470	36470					0.020744005711549107
LMKRDDIIF	9	Unmodified	_LMKRDDIIF_					0	0	0			REV__tr|A0A7D6VTS2|A0A7D6VTS2_9CLOTNitroreductasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17965PE=3SV=1	REV__tr|A0A7D6VTS2|A0A7D6VTS2_9CLOTNitroreductasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17965PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.7940063476562	2	575.818084	1149.62162	1.4713	0.00084719	0.13467	7.7545E-05	1.606	0.00092474	575.8187197238695	127.72	0.74057	127.72	127.54	128.28	0					20	15	3	0	0	0	0.027455	1	14848	14848		42.396	6.7778	1	168880	+		33099	31626	27255	27280	36471	36471					0.05278931668044606
LMKSGGNDRG	10	Unmodified	_LMKSGGNDRG_					0	0	0			REV__ENST00000591949.1_1_19:36237385-36237745:+|nuORF	REV__ENST00000591949.1_1_19:36237385-36237745:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	517.7547607421875	2	517.756015	1033.49748	0.13224	6.8467E-05	-4.1109	-0.0021284	-3.9787	-0.00206	517.7536919411586	99.533	2.2055	97.848	97.009	99.214	-1.685					97	43	4	0	0	0	0.42962	1	6708	6708		64.207	0.901	1	863100	+		33100	27940	27256	27281	36472	36472					-0.017931460994077497
LMKTPDLEI	9	Unmodified	_LMKTPDLEI_					0	0	0		ENSG00000204480|ENST00000376101|PRAMEF19;ENSG00000279804|ENST00000624297|PRAMEF18	ENSG00000204480|ENST00000376101|PRAMEF19;ENSG00000279804|ENST00000624297|PRAMEF18	ENSG00000204480|ENST00000376101|PRAMEF19	MULTI-MSMS	OvCa9_classI_Rep2	2	530.2932739257812	2	530.291368	1058.56818	-0.54783	-0.00029051	3.871	0.0020528	3.3232	0.0017623	530.2933534904101	72.433	2.4044	69.926	69.226	71.631	-2.5071					119	45	5	0	0	0	0.083631	1	5863	5863		101.6	2.2258	1	852840			33101	8991;9599	27257	27282	36473	36473					0.04124134165522264
LMKTPDLEI	9	Unmodified	_LMKTPDLEI_					0	0	0		ENSG00000204480|ENST00000376101|PRAMEF19;ENSG00000279804|ENST00000624297|PRAMEF18	ENSG00000204480|ENST00000376101|PRAMEF19;ENSG00000279804|ENST00000624297|PRAMEF18	ENSG00000204480|ENST00000376101|PRAMEF19	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.2939453125	2	530.291368	1058.56818	-1.7292	-0.00091697	4.3986	0.0023325	2.6694	0.0014156	530.2936572903274	73.496	2.062	70.1	69.785	71.847	-3.3961					124	42	5	0	0	0	0.070405	1	5729	5729		107.01	8.3781	1	3056900			33102	8991;9599	27257	27282	36474	36474					0.04124134165522264
LMKVFTAYP	9	Unmodified	_LMKVFTAYP_					0	0	0			REV__ENST00000508046.1_1_5:68609355-68609532:-|nuORF	REV__ENST00000508046.1_1_5:68609355-68609532:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.3484497070312	2	535.291171	1068.56779	0.96927	0.00051884	2.2545	0.0012068	3.2238	0.0017257	535.2924233709304	132.53	0.56677	132.53	132.18	132.75	0					28	11	4	0	0	0	0.027462	1	15424	15424		45.952	10.334	1	446480	+		33103	21723	27258	27283	36475	36475					0.036247592363451986
LMKVTQFID	9	Unmodified	_LMKVTQFID_					0	0	0			REV__nc|ENSG00000105426|Q13332-7|PTPRS;REV__nc|ENSG00000153707|P23468-2|PTPRD;REV__nc|ENSG00000153707|P23468-7|PTPRD	REV__nc|ENSG00000105426|Q13332-7|PTPRS	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.2216186523438	2	547.79936	1093.58417	2.279	0.0012484	-1.5436	-0.00084558	0.73535	0.00040283	548.3003055391692	116.26	0.68488	116.26	115.91	116.6	0					30	14	3	0	0	0	0.027447	1	13257	13257		56.721	17.915	1	168640	+		33104	17725;20345;28936	27259	27284	36476	36476					0.04111840402447342
LMKWFTGLLL	10	Unmodified	_LMKWFTGLLL_					0	0	0		ENST00000506857.5_1_5:61654086-61657088:+|nuORF	ENST00000506857.5_1_5:61654086-61657088:+|nuORF	ENST00000506857.5_1_5:61654086-61657088:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	611.356201171875	2	611.356845	1220.69914	-3.1571	-0.0019301	1.9229	0.0011756	-1.2343	-0.00075458	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.7759	1	12714	12714		21.96	1.013	1	666990			33105	12917	27260	27285	36477	36477					0.09761569604256692
LMKWKGPF	8	Unmodified	_LMKWKGPF_					0	0	0			REV__ENST00000427130.6_1_8:59535830-59536311:-|nuORF	REV__ENST00000427130.6_1_8:59535830-59536311:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	503.7782897949219	2	503.780773	1005.54699	-3.0867	-0.001555	-1.0099	-0.00050878	-4.0966	-0.0020638	503.78006253314857	36.309	2.2758	33.6	32.75	35.026	-2.7097					126	45	4	0	0	0	0.73288	1	1603	1603		35.201	8.5078	1	296190	+		33106	25674	27261	27286	36478	36478					0.04444213647343531
LMLACVQPR	9	Unmodified	_LMLACVQPR_					0	0	0			REV__ENSG00000171505|ENST00000304880|OR1N1	REV__ENSG00000171505|ENST00000304880|OR1N1	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.8244018554688	2	515.780447	1029.54634	1.2893	0.000665	-0.74446	-0.00038398	0.54484	0.00028102	516.2798491615691	119.8	0.24666	118.77	118.58	118.82	-1.0271					7	4	2	0	0	0	0.027433	1	9106	9106		57.811	0	1	3903.5	+		33107	21622	27262	27287	36479	36479					0.03275050935963009
LMLDLMKN	8	Unmodified	_LMLDLMKN_					0	0	0			REV__ENSG00000115339|ENST00000392701|GALNT3	REV__ENSG00000115339|ENST00000392701|GALNT3	MULTI-MSMS	OvCa99_classI_Rep5	1	489.2644348144531	2	489.261556	976.508559	1.6534	0.00080895	2.7635	0.0013521	4.4169	0.002161	489.2627772778689	83.761	1.0101	83.761	83.293	84.303	0					43	23	3	0	0	0	0.42208	1	8732	8732		85.359	5.9085	1	1432100	+		33108	18237	27263	27288	36480	36480					0.019365399505090863
LMLEAIQNQ	9	Unmodified	_LMLEAIQNQ_					0	0	0			REV__ENST00000549060.1_1_2:144464133-144525738:+|nuORF	REV__ENST00000549060.1_1_2:144464133-144525738:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	530.2808837890625	2	530.278792	1058.54303	1.006	0.00053344	1.2303	0.00065239	2.2362	0.0011858	530.2793603160508	156.46	2.3789	156.46	155.99	158.37	0					109	47	5	0	0	0	0.29717	1	18308	18308		63.306	7.8021	1	1799000	+		33109	16980	27264	27289	36481	36481					0.016100793629448162
LMLFLHGFP	9	Unmodified	_LMLFLHGFP_					0	0	0		ENSG00000105131|ENST00000221730|EPHX3	ENSG00000105131|ENST00000221730|EPHX3	ENSG00000105131|ENST00000221730|EPHX3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.7926635742188	2	537.793881	1073.57321	-0.8973	-0.00048256	-1.0743	-0.00057777	-1.9716	-0.0010603	537.7943387208405	57.978	0.70683	54.633	54.342	55.049	-3.3449					21	13	2	0	0	0	0.02744	1	3794	3794		39.021	0	1	18854			33110	2423	27265	27290	36482	36482					0.039364828188354295
LMLFNKLKN	9	Unmodified	_LMLFNKLKN_					0	0	0		ENST00000604105.1_1_15:21135288-21138168:-|nuORF	ENST00000604105.1_1_15:21135288-21138168:-|nuORF	ENST00000604105.1_1_15:21135288-21138168:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.8297119140625	2	560.830995	1119.64744	-0.041817	-2.3452E-05	-3.0239	-0.0016959	-3.0657	-0.0017193	560.8291900234686	118.51	1.7224	117.16	116.73	118.46	-1.3444					71	32	4	0	0	0	0.22961	1	11098	11098		71.296	1.6681	1	180450			33111	14263	27266	27291	36483	36483					0.09239825910344734
LMLGVLPIF	9	Unmodified	_LMLGVLPIF_					0	0	0			REV__tr|A0A553SGY3|A0A553SGY3_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_11800PE=3SV=1	REV__tr|A0A553SGY3|A0A553SGY3_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_11800PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.7593994140625	2	501.806457	1001.59836	-1.2347	-0.00061959	-2.7529	-0.0013814	-3.9876	-0.002001	501.8058450605462	69.754	0.19186	66.273	66.201	66.393	-3.4812					5	3	2	0	0	0	0.027462	1	5245	5245		49.211	0	1	15190	+		33112	29750	27267	27292	36484	36484					0.09762537621395495
LMLKQEQQGG	10	Unmodified	_LMLKQEQQGG_					0	0	0			REV__tr|A0A553SPH8|A0A553SPH8_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	REV__tr|A0A553SPH8|A0A553SPH8_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	566.2965698242188	2	566.294973	1130.57539	-1.1574	-0.00065545	4.398	0.0024906	3.2406	0.0018351	566.2974538113468	101.45	1.4662	99.844	99.395	100.86	-1.6053					55	27	3	0	0	0	0.34811	1	6920	6920		75.043	3.1658	1	319970	+		33113	30537	27268	27293	36485	36485					0.015328667659787243
LMLLIDKNN	9	Unmodified	_LMLLIDKNN_					0	0	0			REV__nc|ENSG00000159842|Q12979-2|ABR	REV__nc|ENSG00000159842|Q12979-2|ABR	MULTI-MSMS	OvCa99_classI_Rep5	1	537.3052978515625	2	537.30481	1072.59507	1.326	0.00071244	0.79936	0.0004295	2.1253	0.0011419	537.305073906003	111.43	2.0374	111.43	111.02	113.06	0					107	44	4	0	0	0	0.21231	1	12752	12752		74.255	10.048	1	4205600	+		33114	28956	27269	27294	36486	36486					0.061672427767234694
LMLMACCVL	9	Unmodified	_LMLMACCVL_					0	0	0			REV__nc|ENSG00000107021|Q9NVG8-3|TBC1D13	REV__nc|ENSG00000107021|Q9NVG8-3|TBC1D13	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.7715759277344	2	498.741088	995.467622	-0.32306	-0.00016112	-3.3965	-0.001694	-3.7196	-0.0018551	498.73925920107166	102.67	0.83936	100.47	100.2	101.04	-2.1994					19	15	2	0	0	0	0.027462	1	9239	9239		29.842	0	1	14518	+		33115	17833	27270	27295	36487	36487					-0.03029260684968449
LMLMSVLTCL	10	2 Oxidation (M)	_LM(Oxidation (M))LM(Oxidation (M))SVLTCL_		LM(1)LM(1)SVLTCL		LM(51)LM(51)SVLTCL	0	0	2		ENSG00000005243|ENST00000621465|COPZ2	ENSG00000005243|ENST00000621465|COPZ2	ENSG00000005243|ENST00000621465|COPZ2	MULTI-MSMS	OvCa9_classI_Rep3	3	578.29150390625	2	578.294739	1154.57492	-7.6021	-0.0043963	-1.2244	-0.00070806	-8.8265	-0.0051043	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.52321	1	14212	14212		51.335	8.9393	1	1429200			33116	849	27271	27296	36488	36488		26;27			0.0038198773024760158
LMLNKGPSL	9	Unmodified	_LMLNKGPSL_					0	0	0		nc|ENSG00000165181|Q5VXU9-3|SHOC1;nc|ENSG00000165181|Q5VXU9|SHOC1;ENSG00000165181|ENST00000682961|SHOC1	nc|ENSG00000165181|Q5VXU9-3|SHOC1	nc|ENSG00000165181|Q5VXU9-3|SHOC1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.779296875	2	486.78097	971.547388	-1.3336	-0.00064916	-2.7484	-0.0013379	-4.082	-0.001987	486.779577553325	91.231	2.9949	89.206	88.469	91.464	-2.0241					138	60	4	0	0	0	0.16562	1	5735	5735		82.241	7.1972	1	2526800			33117	6532	27272	27297	36489	36489					0.06047588576552698
LMLPLVKN	8	Unmodified	_LMLPLVKN_					0	0	0		ENST00000553077.5_1_16:68224994-68225093:+|nuORF	ENST00000553077.5_1_16:68224994-68225093:+|nuORF	ENST00000553077.5_1_16:68224994-68225093:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	464.29058837890625	2	464.288431	926.562309	-0.52136	-0.00024206	4.3254	0.0020082	3.8041	0.0017662	464.2903804442876	70.348	1.2622	70.348	70.046	71.308	0					75	31	4	0	0	0	0.73288	1	6800	6800		35.201	1.6851	1	16927000			33118	13619	27273	27298	36490	36490					0.09609080444533902
LMLQQWHL	8	Unmodified	_LMLQQWHL_					0	0	0			REV__nc|ENSG00000160145|O60229|KALRN	REV__nc|ENSG00000160145|O60229|KALRN	MULTI-MSMS	OvCa99_classI_Rep5	1	534.7843627929688	2	534.786587	1067.55862	1.5143	0.00080982	-3.6132	-0.0019323	-2.0989	-0.0011225	534.7844684596323	147.86	1.0706	147.86	147.55	148.62	0					59	21	4	0	0	0	0.65582	1	17336	17336		52.299	4.3836	1	726250	+		33119	20640	27274	27299	36491	36491					0.02754410670672769
LMLSAEKLKP	10	Unmodified	_LMLSAEKLKP_					0	0	0		tr|A0A553SIY5|A0A553SIY5_NIACIUndecaprenyl-diphosphataseOS=NialliacirculansOX=1397GN=uppPPE=3SV=1	tr|A0A553SIY5|A0A553SIY5_NIACIUndecaprenyl-diphosphataseOS=NialliacirculansOX=1397GN=uppPPE=3SV=1	tr|A0A553SIY5|A0A553SIY5_NIACIUndecaprenyl-diphosphataseOS=NialliacirculansOX=1397GN=uppPPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.309814453125	2	565.33611	1128.65767	1.4363	0.00081202	1.8754	0.0010602	3.3117	0.0018722	565.3357541127015	98.029	0.15164	95.65	95.573	95.725	-2.3786					4	2	2	0	0	0	0.026635	1	8698	8698		56.721	7.185	1	9731.2			33120	33440	27275	27300	36492	36492					0.09848388844920919
LMLSCDPLK	9	Unmodified	_LMLSCDPLK_					0	0	0			REV__L1MEc_dup2383|chr2:89575914-89577159:-|1.0505817924982768|0.1474267064561223|2.83|423.0|63|1|anti-sense	REV__L1MEc_dup2383|chr2:89575914-89577159:-|1.0505817924982768|0.1474267064561223|2.83|423.0|63|1|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	510.26751708984375	2	510.266838	1018.51912	-0.5229	-0.00026682	0.79828	0.00040733	0.27538	0.00014051	510.267069351966	39.522	0.90826	39.522	39.063	39.971	0					47	20	4	0	0	0	0.50149	1	2348	2348		42.396	6.7778	1	1826100	+		33121	28443	27276	27301	36493	36493					0.0106052260495062
LMLSIPLTN	9	Unmodified	_LMLSIPLTN_					0	0	0		nc|ENSG00000136044|Q8NEU8-2|APPL2;ENSG00000136044|ENST00000258530|APPL2;nc|ENSG00000136044|Q8NEU8-3|APPL2	nc|ENSG00000136044|Q8NEU8-2|APPL2	nc|ENSG00000136044|Q8NEU8-2|APPL2	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.2902526855469	2	501.288628	1000.5627	1.3674	0.00068548	2.2705	0.0011382	3.6379	0.0018236	501.2895121117765	137.98	2.3901	136.45	135.78	138.17	-1.5284					99	50	3	0	0	0	0.60342	1	13450	13450		31.53	3.2755	1	64432			33122	4450	27277	27302	36494	36494					0.062444553737236674
LMLSWLQW	8	Oxidation (M)	_LM(Oxidation (M))LSWLQW_		LM(1)LSWLQW		LM(66)LSWLQW	0	0	1			REV__ENST00000420969.1_1_2:162363621-162363786:-|nuORF	REV__ENST00000420969.1_1_2:162363621-162363786:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	546.7808837890625	2	546.78097	1091.54739	-0.38383	-0.00020987	2.5472	0.0013928	2.1634	0.0011829	546.7822736350716	121.95	3.3566	121.74	121.33	124.69	-0.21033					164	67	4	0	0	0	0.59148	1	11887	11887		65.803	7.5733	1	467550	+		33123	25598	27278	27303	36495	36495		574			0.005275885765286148
LMLTNVRLPD	10	Unmodified	_LMLTNVRLPD_					0	0	0		ENST00000552030.5_1_12:109042755-109052582:-|nuORF	ENST00000552030.5_1_12:109042755-109052582:-|nuORF	ENST00000552030.5_1_12:109042755-109052582:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	586.3278198242188	2	586.328816	1170.64308	-1.1947	-0.00070051	-1.826	-0.0010706	-3.0207	-0.0017711	586.3273567168357	69.898	0.73724	69.898	69.632	70.369	0					38	17	3	0	0	0	0.26627	1	6665	6665		84.916	6.6517	1	2003200			33124	13609	27279	27304	36496	36496					0.06458316696762267
LMLWSSKKR	9	Unmodified	_LMLWSSKKR_					0	0	0			REV__nc|ENSG00000163995|Q6H8Q1-3|ABLIM2	REV__nc|ENSG00000163995|Q6H8Q1-3|ABLIM2	MULTI-MSMS	OvCa9_classI_Rep2	2	574.836669921875	2	574.834069	1147.65358	0.90555	0.00052054	4.2517	0.002444	5.1573	0.0029646	574.8365086671698	89.906	5.8582	88.604	88.285	94.143	-1.302					235	114	5	0	0	0	0.38529	1	7923	7923		53.351	3.8154	1	3839600	+		33125	28969	27280	27305	36497	36497					0.0856634414187738
LMMDYNNI	8	Unmodified	_LMMDYNNI_					0	0	0			REV__ENST00000461743.1_1_6:33231479-33231808:-|nuORF	REV__ENST00000461743.1_1_6:33231479-33231808:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.7690734863281	2	507.225171	1012.43579	-0.84038	-0.00042626	1.0617	0.0005385	0.22128	0.00011224	507.22566354442654	99.272	0.67367	96.946	96.743	97.417	-2.3253					19	12	2	0	0	0	0.028476	1	8892	8892		35.618	3.6634	1	43067	+		33126	23353	27281	27306	36498	36498					-0.06993213842929435
LMMDYNNI	8	Unmodified	_LMMDYNNI_					0	0	0			REV__ENST00000461743.1_1_6:33231479-33231808:-|nuORF	REV__ENST00000461743.1_1_6:33231479-33231808:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	507.225171	1012.43579	-0.43954	-0.00022295	0.2611	0.00013244	-0.17844	-9.0508E-05	507.2252415726959	97.849	0.8802	96.89	96.513	97.393	-0.95857	-0.041583	-0.00059449	NaN	35.618	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28465	+		33127	23353	27281	27306							-0.06993213842929435
LMMDYNNI	8	Unmodified	_LMMDYNNI_					0	0	0			REV__ENST00000461743.1_1_6:33231479-33231808:-|nuORF	REV__ENST00000461743.1_1_6:33231479-33231808:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	507.225171	1012.43579	-0.6858	-0.00034785	1.9063	0.00096693	1.2205	0.00061907	507.2259494179766	98.645	0.77542	96.959	96.749	97.524	-1.685	0.027414	0.0010745	NaN	35.618	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47345	+		33128	23353	27281	27306							-0.06993213842929435
LMMIPVIIP	9	Unmodified	_LMMIPVIIP_					0	0	0			REV__nc|ENSG00000103723|Q13367-3|AP3B2	REV__nc|ENSG00000103723|Q13367-3|AP3B2	MULTI-MSMS	OvCa9_classI_Rep2	2	513.80810546875	2	513.808142	1025.60173	0.22074	0.00011342	-0.11424	-5.8698E-05	0.1065	5.4721E-05	513.8078754381862	110.61	1.3823	110.45	110.02	111.4	-0.16467					74	27	4	0	0	0	0.42921	2	10411	10411;10428		49.211	10.189	1	196500	+		33129	17632	27282	27307	36499;36500	36499					0.08995464403756159
LMMIPVIIP	9	Unmodified	_LMMIPVIIP_					0	0	0			REV__nc|ENSG00000103723|Q13367-3|AP3B2	REV__nc|ENSG00000103723|Q13367-3|AP3B2	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.8080444335938	2	513.808142	1025.60173	0.086417	4.4402E-05	0.033729	1.733E-05	0.12015	6.1732E-05	513.8079474802043	112.14	1.5839	110.62	110.11	111.69	-1.5111					76	30	4	0	0	0	0.53728	1	10362	10362		39.021	1.8624	1	228810	+		33130	17632	27282	27307	36501	36501					0.08995464403756159
LMMLPPLIII	10	Unmodified	_LMMLPPLIII_					0	0	0			REV__tr|A0A553SHZ8|A0A553SHZ8_NIACITypeVIIsecretionproteinEssCOS=NialliacirculansOX=1397GN=essCPE=4SV=1	REV__tr|A0A553SHZ8|A0A553SHZ8_NIACITypeVIIsecretionproteinEssCOS=NialliacirculansOX=1397GN=essCPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	576.7877807617188	2	577.357999	1152.70145	-1.6285	-0.00094021	-2.5622	-0.0014793	-4.1907	-0.0024195	577.3563345516696	102.5	0.34527	101.81	101.74	102.08	-0.68459					8	6	2	0	0	0	0.027147	1	9463	9463		19.36	0	1	10290	+		33131	29856	27283	27308	36502	36502					0.1312028201771227
LMMREDMKM	9	Unmodified	_LMMREDMKM_					0	0	0		tr|A0A553SLH1|A0A553SLH1_NIACIGTP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_20655PE=4SV=1	tr|A0A553SLH1|A0A553SLH1_NIACIGTP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_20655PE=4SV=1	tr|A0A553SLH1|A0A553SLH1_NIACIGTP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_20655PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.3102416992188	2	592.768365	1183.52218	1.6408	0.0009726	2.8668	0.0016993	4.5076	0.0026719	592.7706377800429	133.26	0.40527	133.26	133.08	133.49	0					11	8	2	0	0	0	0.027462	1	15510	15510		32.812	6.1195	1	48781			33132	33722	27284	27309	36503	36503					-0.06224293604213926
LMMVLKQPV	9	Unmodified	_LMMVLKQPV_					0	0	0			REV__ENST00000511127.1_1_4:145768248-145768308:+|nuORF	REV__ENST00000511127.1_1_4:145768248-145768308:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.3051147460938	2	529.808674	1057.60279	-1.3855	-0.00073405	-2.4264	-0.0012855	-3.8119	-0.0020196	529.8073555443808	103.83	0.74084	103.25	102.88	103.62	-0.57639					35	14	4	0	0	0	0.027433	1	9625	9625		47.916	0	1	499800	+		33133	26953	27285	27310	36504	36504					0.0762967877265055
LMNAVSPLK	9	Unmodified	_LMNAVSPLK_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	MULTI-MSMS	OvCa9_classI_Rep3	3	486.7793884277344	2	486.78097	971.547388	-1.3336	-0.00064916	-2.7484	-0.0013379	-4.082	-0.001987	486.779577553325	91.231	2.9949	89.206	88.469	91.464	-2.0241					138	60	4	0	0	0	0.083631	2	5689	5689;5754		101.6	13.283	1	2526800			33134	6506	27286	27311	36505;36506	36505					0.060475885765413295
LMNEIGKGYI	10	Oxidation (M)	_LM(Oxidation (M))NEIGKGYI_		LM(1)NEIGKGYI		LM(99)NEIGKGYI	0	0	1			REV__tr|A0A7D6VS64|A0A7D6VS64_9CLOTLargeribosomalsubunitproteinbL25OS=ClostridiumintestinaleOX=36845GN=rplYPE=3SV=1	REV__tr|A0A7D6VS64|A0A7D6VS64_9CLOTLargeribosomalsubunitproteinbL25OS=ClostridiumintestinaleOX=36845GN=rplYPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	577.3003540039062	2	577.299724	1152.5849	0.67429	0.00038927	-1.2604	-0.00072762	-0.5861	-0.00033835	577.2985886158132	153.8	3.8009	153.8	153.4	157.2	0					185	75	4	0	0	0	0.1722	2	18190	18142;18190		98.629	13.714	1	5848200	+		33135	31472	27287	27312	36507;36508	36508		698			0.014706350514870792
LMNIPVLVL	9	Unmodified	_LMNIPVLVL_					0	0	0		nc|ENSG00000114956|Q16854-3|DGUOK;nc|ENSG00000114956|Q16854-5|DGUOK;ENSG00000114956|ENST00000264093|DGUOK;nc|ENSG00000114956|Q16854-4|DGUOK;nc|ENSG00000114956|Q16854-2|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	MULTI-MSMS	OvCa9_classI_Rep2	2	506.3182067871094	2	506.317189	1010.61982	-0.7007	-0.00035478	4.0833	0.0020675	3.3826	0.0017127	506.31921288144724	59.031	1.6985	56.251	55.74	57.438	-2.7801					106	32	5	0	0	0	0.44294	1	4325	4325		47.916	1.9434	1	1253400			33136	3051	27288	27313	36509	36509					0.11493922650095101
LMNISSVIF	9	Unmodified	_LMNISSVIF_					0	0	0			REV__tr|A0A7D7A192|A0A7D7A192_9CLOTProbablemultidrugresistanceproteinNorMOS=ClostridiumintestinaleOX=36845GN=HZF06_14300PE=4SV=1	REV__tr|A0A7D7A192|A0A7D7A192_9CLOTProbablemultidrugresistanceproteinNorMOS=ClostridiumintestinaleOX=36845GN=HZF06_14300PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	512.2791748046875	2	512.280803	1022.54705	0.55055	0.00028204	-4.1311	-0.0021163	-3.5805	-0.0018342	512.2785275859809	112.08	2.0707	111.96	111.24	113.31	-0.12174					99	41	3	0	0	0	0.28934	1	10589	10589		64.207	6.396	1	239540	+		33137	32479	27289	27314	36510	36510					0.036681688566886805
LMNLLANDD	9	Unmodified	_LMNLLANDD_					0	0	0		ENSG00000147647|ENST00000351513|DPYS	ENSG00000147647|ENST00000351513|DPYS	ENSG00000147647|ENST00000351513|DPYS	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7546081542969	2	509.747324	1017.4801	0.45694	0.00023292	-3.5692	-0.0018194	-3.1122	-0.0015864	509.74524937026644	71.996	0.37228	71.996	71.835	72.208	0					12	8	2	0	0	0	0.027462	1	6985	6985		27.882	0	1	184270			33138	5368	27290	27315	36511	36511					-0.027944864250798673
LMNLVLEKD	9	Unmodified	_LMNLVLEKD_					0	0	0		ENST00000397292.7_1_9:26920358-26923217:-|nuORF	ENST00000397292.7_1_9:26920358-26923217:-|nuORF	ENST00000397292.7_1_9:26920358-26923217:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.7951049804688	2	537.796817	1073.57908	-1.3984	-0.00075205	-2.2271	-0.0011977	-3.6255	-0.0019498	537.7956678008344	124	0.96437	122.61	122.42	123.39	-1.3908					29	18	3	0	0	0	0.55011	1	11764	11764		37.812	2.1932	1	40136			33139	11343	27291	27316	36512	36512					0.04523536539818451
LMNLYMVM	8	3 Oxidation (M)	_LM(Oxidation (M))NLYM(Oxidation (M))VM(Oxidation (M))_		LM(1)NLYM(1)VM(1)		LM(55)NLYM(55)VM(55)	0	0	3			REV__nc|ENSG00000143376|Q96L92-2|SNX27	REV__nc|ENSG00000143376|Q96L92-2|SNX27	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.73583984375	2	531.737057	1061.45956	2.9257	0.0015557	-1.6745	-0.0008904	1.2512	0.00066531	531.7359528583855	131.53	2.1105	130.03	128.93	131.05	-1.5014					80	42	3	0	0	0	0.64377	1	12667	12667		54.765	22.81	1	90158	+		33140	19837	27292	27317	36513	36513		452;453;454			-0.06871116400725441
LMNMMMMS	8	2 Oxidation (M)	_LMNM(Oxidation (M))MMM(Oxidation (M))S_		LM(0.001)NM(0.383)M(0.383)M(0.383)M(0.85)S		LM(-26)NM(0)M(0)M(0)M(7.6)S	0	0	2		ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	ENSG00000132017|ENST00000254337|DCAF15	MULTI-MSMS	OvCa99_classI_Rep5	1	510.6891174316406	2	510.688195	1019.36184	0.65479	0.00033439	0.68283	0.00034871	1.3376	0.0006831	510.68832103722	160.31	0.75366	160.31	160.01	160.76	0					27	14	3	0	0	0	0.66704	1	18792	18792		50.025	11.003	10	68085			33141	4108	27293	27318	36514	36514		125;126;127;128			-0.14706964592744498
LMNSNKLFD	9	Unmodified	_LMNSNKLFD_					0	0	0			REV__nc|ENSG00000185480|Q9NWS1-6|PARPBP	REV__nc|ENSG00000185480|Q9NWS1-6|PARPBP	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.2584228515625	2	541.270967	1080.52738	1.0325	0.00055886	-0.67184	-0.00036365	0.36066	0.00019521	541.2704714903289	156.43	0.80559	156.43	156.09	156.9	0					27	15	2	0	0	0	0.027459	1	18316	18316		44.377	8.7589	1	244390	+		33142	22507	27294	27319	36515	36515					-0.009662071540560646
LMNTRRKIKLW	11	Unmodified	_LMNTRRKIKLW_					0	0	0		ENST00000487874.1_1_1:35476098-35476426:-|nuORF	ENST00000487874.1_1_1:35476098-35476426:-|nuORF	ENST00000487874.1_1_1:35476098-35476426:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	486.9576110839844	3	486.962379	1457.86531	-4.5662	-0.0022236	-2.3868	-0.0011623	-6.953	-0.0033859	486.96097052321403	158.19	2.6802	157.96	156.57	159.25	-0.22697					116	71	2	0	0	0	0.72568	1	16080	16080		6.6596	0.65857	1	34308			33143	12656	27295	27320	36516	36516					0.15469015832809418
LMPFQVPEL	9	Unmodified	_LMPFQVPEL_					0	0	0		ENSG00000121281|ENST00000673801|ADCY7	ENSG00000121281|ENST00000673801|ADCY7	ENSG00000121281|ENST00000673801|ADCY7	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3164672851562	2	537.288628	1072.5627	2.0428	0.0010976	2.1026	0.0011297	4.1454	0.0022273	537.289944940755	136.7	0.66968	136.7	136.39	137.06	0					20	13	2	0	0	0	0.027447	1	15921	15921		56.721	9.0637	1	62184			33144	3476	27296	27321	36517	36517					0.02932455373729681
LMPIMNVIN	9	Unmodified	_LMPIMNVIN_					0	0	0		tr|A0A7D6W0S1|A0A7D6W0S1_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00970PE=4SV=1	tr|A0A7D6W0S1|A0A7D6W0S1_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00970PE=4SV=1	tr|A0A7D6W0S1|A0A7D6W0S1_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00970PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.33154296875	2	522.782656	1043.55076	0.39679	0.00020743	-0.83126	-0.00043457	-0.43448	-0.00022714	522.7822094851732	158.2	0.69345	158.2	157.96	158.65	0					25	14	3	0	0	0	0.027462	1	18563	18563		30.504	8.8013	1	61641			33145	35387	27297	27322	36518	36518					0.030725153589173715
LMPLIMKK	8	Unmodified	_LMPLIMKK_					0	0	0		ENST00000267176.8_1_12:123806144-123806216:-|nuORF	ENST00000267176.8_1_12:123806144-123806216:-|nuORF	ENST00000267176.8_1_12:123806144-123806216:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.7763366699219	2	487.300484	972.586416	2.7715	0.0013506	-1.7168	-0.00083662	1.0547	0.00051396	487.2994742197107	89.513	0.40889	89.513	89.313	89.722	0					15	9	2	0	0	0	0.028476	1	9559	9559		42.474	0	1	352490			33146	9964	27298	27323	36519	36519					0.0990259760654908
LMPLPISL	8	Unmodified	_LMPLPISL_					0	0	0		tr|A0A553SJQ2|A0A553SJQ2_NIACIS-adenosylmethioninesynthaseOS=NialliacirculansOX=1397GN=metKPE=3SV=1	tr|A0A553SJQ2|A0A553SJQ2_NIACIS-adenosylmethioninesynthaseOS=NialliacirculansOX=1397GN=metKPE=3SV=1	tr|A0A553SJQ2|A0A553SJQ2_NIACIS-adenosylmethioninesynthaseOS=NialliacirculansOX=1397GN=metKPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	442.2720947265625	2	442.269707	882.524861	1.6408	0.00072568	2.6934	0.0011912	4.3342	0.0019169	442.2707883440315	96.215	1.7281	95.187	94.863	96.592	-1.0281					69	34	3	0	0	0	0.57589	1	8689	8689		69.093	0.60827	1	284170			33147	33528	27299	27324	36520	36520					0.07889989178920587
LMPLVTLPKG	10	Unmodified	_LMPLVTLPKG_					0	0	0		ENST00000509818.5_1_4:119687763-119745832:-|nuORF	ENST00000509818.5_1_4:119687763-119745832:-|nuORF	ENST00000509818.5_1_4:119687763-119745832:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	534.7772216796875	2	534.827921	1067.64129	0.17588	9.4068E-05	2.7285	0.0014593	2.9044	0.0015534	534.8298245397158	75.667	0.71047	73.257	72.87	73.581	-2.4106					9	7	2	0	0	0	0.026915	1	3833	3833		14.865	0	1	47455			33148	12966	27300	27325	36521	36521					0.11017307678821453
LMPTIVTYFV	10	Oxidation (M)	_LM(Oxidation (M))PTIVTYFV_		LM(1)PTIVTYFV		LM(44)PTIVTYFV	0	0	1			REV__nc|ENSG00000254769|Q8NGN8|OR4A4P;REV__ENSG00000237388|ENST00000446524|OR4A47	REV__nc|ENSG00000254769|Q8NGN8|OR4A4P	MULTI-MSMS	OvCa9_classI_Rep3	3	600.3229370117188	2	600.322668	1198.63078	-2.9075	-0.0017454	4.3538	0.0026137	1.4464	0.00086829	600.3251735089444	151.69	1.358	150.74	150.35	151.71	-0.95645					71	26	4	0	0	0	0.58282	1	12920	12920		44.117	6.3053	1	229880	+		33149	29175;23418	27301	27326	36522	36522		547			0.03941280233721045
LMQLFLCFI	9	Unmodified	_LMQLFLCFI_					0	0	0			REV__ENST00000376281.8_1_9:86583510-86583630:-|nuORF	REV__ENST00000376281.8_1_9:86583510-86583630:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	564.2999267578125	2	564.303224	1126.5919	1.2176	0.00068712	-3.3213	-0.0018742	-2.1037	-0.0011871	564.3012702664091	158.01	1.9734	158.01	157.55	159.52	0					67	40	3	0	0	0	0.34496	1	18515	18515		57.811	10.154	1	117740	+		33150	25097	27302	27327	36523	36523					0.03366276398355694
LMQLLFVW	8	Unmodified	_LMQLLFVW_					0	0	0		TRRAP|p.G1086Afs*42|1|0.04|ENSG00000196367|chr7:98930067-98930068|-/GGCCACTTGTATTTGTTCACTTTTATTTCCGATCC|frameshift_variant	TRRAP|p.G1086Afs*42|1|0.04|ENSG00000196367|chr7:98930067-98930068|-/GGCCACTTGTATTTGTTCACTTTTATTTCCGATCC|frameshift_variant	TRRAP|p.G1086Afs*42|1|0.04|ENSG00000196367|chr7:98930067-98930068|-/GGCCACTTGTATTTGTTCACTTTTATTTCCGATCC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	525.2962036132812	2	525.296256	1048.57796	-0.7425	-0.00039003	-0.53097	-0.00027892	-1.2735	-0.00066895	525.2962332041591	48.014	1.342	45.304	44.885	46.228	-2.7097					84	26	5	0	0	0	0.72922	1	2957	2957		37.028	1.4102	1	278320			33151	36286	27303	27328	36524	36524					0.05561366961569547
LMQLLLDP	8	Unmodified	_LMQLLLDP_					0	0	0			REV__nc|ENSG00000174678|A6NHR8|FAM47DP	REV__nc|ENSG00000174678|A6NHR8|FAM47DP	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.77239990234375	2	471.770071	941.52559	0.70033	0.0003304	3.1416	0.0014821	3.842	0.0018125	471.77151465294384	65.014	2.1826	61.528	60.872	63.054	-3.4854					101	44	4	0	0	0	0.47599	1	4670	4670		79.939	0	1	2027800	+		33152	29013	27304	27329	36525	36525					0.05248783827960324
LMQTALLGPG	10	Unmodified	_LMQTALLGPG_					0	0	0		ENST00000397661.6_1_19:13206376-13206544:+|nuORF	ENST00000397661.6_1_19:13206376-13206544:+|nuORF	ENST00000397661.6_1_19:13206376-13206544:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.3022155761719	2	500.778428	999.542302	-1.0619	-0.00053177	-0.88951	-0.00044545	-1.9514	-0.00097722	500.77694655335637	98.985	1.1443	98.092	97.757	98.901	-0.89306					40	22	3	0	0	0	0.026635	1	9049	9049		47.657	8.4045	1	55483			33153	11350	27305	27330	36526	36526					0.042512847139278165
LMQTALLGPG	10	Unmodified	_LMQTALLGPG_					0	0	0		ENST00000397661.6_1_19:13206376-13206544:+|nuORF	ENST00000397661.6_1_19:13206376-13206544:+|nuORF	ENST00000397661.6_1_19:13206376-13206544:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	500.778428	999.542302	-0.76627	-0.00038373	-0.20867	-0.0001045	-0.97494	-0.00048823	500.7766808674286	99.83	0.66174	98.145	97.777	98.438	-1.685	0.023087	5.4061E-05	NaN	47.657	31	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45459			33154	11350	27305	27330							0.042512847139278165
LMQWAAFE	8	Unmodified	_LMQWAAFE_					0	0	0			REV__ENSG00000115446|ENST00000357765|UNC50	REV__ENSG00000115446|ENST00000357765|UNC50	MULTI-MSMS	OvCa99_classI_Rep5	1	498.2369079589844	2	498.236396	994.458238	2.6675	0.001329	-0.40852	-0.00020354	2.259	0.0011255	498.23612308643516	116.03	0.82963	116.03	115.63	116.46	0					32	17	3	0	0	0	0.47599	1	13259	13259		79.939	0	1	215560	+		33155	18245	27306	27331	36527	36527					-0.03921246382992649
LMRKSIPS	8	Unmodified	_LMRKSIPS_					0	0	0			REV__ENST00000381645.7_1_22:38756869-38776397:-|nuORF	REV__ENST00000381645.7_1_22:38756869-38776397:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.2731628417969	2	466.273312	930.532072	-1.8161	-0.00084679	1.4777	0.000689	-0.3384	-0.00015779	466.2738382465089	49.971	1.7526	46.829	46.301	48.054	-3.1416					59	33	3	0	0	0	0.57734	1	2849	2849		68.787	2.9837	1	283940	+		33156	25202	27307	27332	36528	36528					0.06402721779340936
LMRKSIPS	8	Unmodified	_LMRKSIPS_					0	0	0			REV__ENST00000381645.7_1_22:38756869-38776397:-|nuORF	REV__ENST00000381645.7_1_22:38756869-38776397:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	466.273312	930.532072	-1.083	-0.00050499	0.83817	0.00039082	-0.24487	-0.00011418	466.27357078410995	49.653	1.3879	46.893	46.424	47.812	-2.7603	0.031965	-0.00031771	NaN	68.787	50	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109660	+		33157	25202	27307	27332							0.06402721779340936
LMRPGVPQ	8	Unmodified	_LMRPGVPQ_					0	0	0		ENST00000441560.6_1_14:50999890-50999971:+|nuORF	ENST00000441560.6_1_14:50999890-50999971:+|nuORF	ENST00000441560.6_1_14:50999890-50999971:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	449.2689514160156	2	449.25238	896.490207	1.1385	0.00051147	1.7672	0.00079393	2.9057	0.0013054	449.25344371041314	114.17	0.25839	112.73	112.58	112.84	-1.4461					6	4	2	0	0	0	0.028476	1	10611	10611		24.203	11.244	1	4668.6			33158	11931	27308	27333	36529	36529					0.03782166090820738
LMRSHFVI	8	Unmodified	_LMRSHFVI_					0	0	0			REV__nc|ENSG00000123338|P55160-2|NCKAP1L	REV__nc|ENSG00000123338|P55160-2|NCKAP1L	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.781005859375	2	501.781305	1001.54806	-1.4403	-0.00072271	2.9363	0.0014734	1.496	0.00075069	501.7826273306775	42.051	1.2362	39.071	38.906	40.142	-2.9804					61	23	3	0	0	0	0.65582	1	1925	1925		52.299	1.1065	1	354840	+		33159	18634	27309	27334	36530	36530					0.04734428016251968
LMRTAPNSV	9	Unmodified	_LMRTAPNSV_					0	0	0			REV__nc|ENSG00000172534|P51610-2|HCFC1	REV__nc|ENSG00000172534|P51610-2|HCFC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.2878723144531	2	494.765852	987.51715	1.2254	0.00060626	-4.473	-0.0022131	-3.2477	-0.0016068	494.76340187081615	109.35	0.39738	109.35	109.11	109.5	0					10	8	2	0	0	0	0.027441	1	12383	12383		58.782	0	1	44453	+		33160	21708	27310	27335	36531	36531					0.02289229911343682
LMRTCERLV	9	Unmodified	_LMRTCERLV_					0	0	0		ENSG00000196850|ENST00000354300|PPTC7	ENSG00000196850|ENST00000354300|PPTC7	ENSG00000196850|ENST00000354300|PPTC7	MULTI-MSMS	OvCa9_classI_Rep3	3	560.8036499023438	2	560.801911	1119.58927	0.25307	0.00014192	2.364	0.0013257	2.617	0.0014676	560.8032345362215	129.48	1.9294	128.36	128.04	129.97	-1.1121					118	38	5	0	0	0	0.19758	1	10319	10319		76.774	7.9873	1	1829600			33161	8653	27311	27336	36532	36532					0.034258209933796024
LMRTIAEEV	9	Unmodified	_LMRTIAEEV_					0	0	0			REV__ENSG00000169087|ENST00000306103|HSPBAP1	REV__ENSG00000169087|ENST00000306103|HSPBAP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.3136596679688	2	531.286617	1060.55868	-0.11677	-6.2038E-05	3.9573	0.0021025	3.8406	0.0020404	531.2884693674055	30.358	0.29666	30.358	30.186	30.483	0					11	5	3	0	0	0	0.027462	1	1145	1145		35.618	0	1	81079	+		33162	21430	27312	27337	36533	36533					0.03082365880004545
LMSHLGGGLL	10	Oxidation (M)	_LM(Oxidation (M))SHLGGGLL_		LM(1)SHLGGGLL		LM(66)SHLGGGLL	0	0	1			REV__ENST00000457894.4_1_X:38664879-38665017:+|nuORF	REV__ENST00000457894.4_1_X:38664879-38665017:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.2775573730469	2	507.276052	1012.53755	-1.7431	-0.00088424	-1.2564	-0.00063736	-2.9996	-0.0015216	507.2753824037973	108.66	0.96454	106.94	106.72	107.68	-1.7256					42	18	3	0	0	0	0.41846	1	9947	9947		65.803	7.0212	1	463130	+		33163	26052	27313	27338	36534	36534		586			0.03178400571164275
LMSISNNSL	9	Oxidation (M)	_LM(Oxidation (M))SISNNSL_		LM(1)SISNNSL		LM(110)SISNNSL	0	0	1			REV__nc|ENSG00000184347|O75094-2|SLIT3	REV__nc|ENSG00000184347|O75094-2|SLIT3	MULTI-MSMS	OvCa99_classI_Rep5	1	497.7471008300781	2	497.747324	993.480096	1.6415	0.00081705	-3.0774	-0.0015318	-1.4359	-0.00071473	497.7456067490501	122.64	0.73636	122.64	122.4	123.14	0					31	15	3	0	0	0	0.068524	1	14116	14116		108.09	14.892	1	706690	+		33164	22424	27314	27339	36535	36535		518			-0.016904864250705032
LMSITPVAGV	10	Unmodified	_LMSITPVAGV_					0	0	0			REV__tr|A0A7D6ZZX0|A0A7D6ZZX0_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_21880PE=3SV=1	REV__tr|A0A7D6ZZX0|A0A7D6ZZX0_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_21880PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.78070068359375	2	494.280803	986.547053	1.6439	0.00081254	2.6023	0.0012863	4.2462	0.0020988	494.2820485786951	93.042	0.2947	93.042	92.968	93.263	0					15	6	3	0	0	0	0.026982	1	10081	10081		23.042	3.6825	1	2593800	+		33165	32427	27315	27340	36536	36536					0.053241688566799894
LMSKDHNTI	9	Unmodified	_LMSKDHNTI_					0	0	0		tr|A0A7D6VXT6|A0A7D6VXT6_9CLOTPhosphate-specifictransportsystemaccessoryproteinPhoUOS=ClostridiumintestinaleOX=36845GN=phoUPE=3SV=1	tr|A0A7D6VXT6|A0A7D6VXT6_9CLOTPhosphate-specifictransportsystemaccessoryproteinPhoUOS=ClostridiumintestinaleOX=36845GN=phoUPE=3SV=1	tr|A0A7D6VXT6|A0A7D6VXT6_9CLOTPhosphate-specifictransportsystemaccessoryproteinPhoUOS=ClostridiumintestinaleOX=36845GN=phoUPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	530.3092041015625	2	529.768591	1057.52263	0.32486	0.0001721	-0.039502	-2.0927E-05	0.28535	0.00015117	530.2698964874583	105.44	0.20831	104.09	103.99	104.2	-1.3482					5	3	2	0	0	0	0.027418	1	7396	7396		40.778	0	1	6099			33166	35302	27316	27341	36537	36537					-0.0038309129683966603
LMSLLTIND	9	Unmodified	_LMSLLTIND_					0	0	0			REV__KIF18A|p.T342Nfs*18|1|0.18|ENSG00000121621|chr11:28084681-28084681|G/-|frameshift_variant	REV__KIF18A|p.T342Nfs*18|1|0.18|ENSG00000121621|chr11:28084681-28084681|G/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.8164978027344	2	510.275718	1018.53688	1.2593	0.00064261	-1.5791	-0.0008058	-0.31981	-0.00016319	510.2750024302561	145.35	0.6405	145.35	144.99	145.63	0					17	13	2	0	0	0	0.027462	1	16976	16976		30.318	0	1	24399	+		33167	28334	27317	27342	36538	36538					0.0283556113143959
LMSPRGVVI	9	Unmodified	_LMSPRGVVI_					0	0	0		chr4:55346557-55369832|115|10.68|0.08|7.09|+|2|SRD5A3,SRD5A3|1	chr4:55346557-55369832|115|10.68|0.08|7.09|+|2|SRD5A3,SRD5A3|1	chr4:55346557-55369832|115|10.68|0.08|7.09|+|2|SRD5A3,SRD5A3|1	MULTI-MSMS	OvCa9_classI_Rep2	2	486.2887268066406	2	486.288963	970.563372	-0.051282	-2.4938E-05	0.13101	6.3706E-05	0.079724	3.8769E-05	486.28890972170547	95.271	2.7144	94.243	93.482	96.196	-1.0281					110	54	3	0	0	0	0.19758	3	8566	8541;8547;8566		76.774	13.796	1	2640800			33168	491	27318	27343	36539;36540;36541	36541					0.07691294813446348
LMSPRGVVI	9	Unmodified	_LMSPRGVVI_					0	0	0		chr4:55346557-55369832|115|10.68|0.08|7.09|+|2|SRD5A3,SRD5A3|1	chr4:55346557-55369832|115|10.68|0.08|7.09|+|2|SRD5A3,SRD5A3|1	chr4:55346557-55369832|115|10.68|0.08|7.09|+|2|SRD5A3,SRD5A3|1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.2898864746094	2	486.288963	970.563372	-1.3386	-0.00065093	1.302	0.00063316	-0.036553	-1.7776E-05	486.28968430992785	96.173	2.6618	94.345	93.531	96.193	-1.8286					91	52	2	0	0	0	0.31747	1	6298	6298		60.972	2.19	1	3287800			33169	491	27318	27343	36542	36542					0.07691294813446348
LMSRLLSEN	9	Oxidation (M)	_LM(Oxidation (M))SRLLSEN_		LM(1)SRLLSEN		LM(110)SRLLSEN	0	0	1		ENSG00000160284|ENST00000291672|SPATC1L	ENSG00000160284|ENST00000291672|SPATC1L	ENSG00000160284|ENST00000291672|SPATC1L	MULTI-MSMS	OvCa99_classI_Rep5	1	539.7811279296875	2	539.781699	1077.54884	2.6931	0.0014537	-4.0108	-0.0021649	-1.3176	-0.00071122	539.7793151653044	90.32	0.63647	90.32	90.101	90.738	0					37	15	4	0	0	0	0.07097	1	9671	9671		106.68	15.906	1	3340100			33170	6052	27319	27344	36543	36543		192			0.013171778746482232
LMSRLLSEN	9	Oxidation (M)	_LM(Oxidation (M))SRLLSEN_					0	0	1		ENSG00000160284|ENST00000291672|SPATC1L	ENSG00000160284|ENST00000291672|SPATC1L	ENSG00000160284|ENST00000291672|SPATC1L	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	539.781699	1077.54884	-1.5256	-0.0008235	-1.4727	-0.00079495	-2.9984	-0.0016185	539.7807249716649	93.196	0.30057	90.689	90.463	90.763	-2.5072	0.18427	0.0022371	NaN	106.68	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182820			33171	6052	27319	27344				192			0.013171778746482232
LMTAETYCS	9	Unmodified	_LMTAETYCS_					0	0	0			REV__ENSG00000154864|ENST00000674853|PIEZO2	REV__ENSG00000154864|ENST00000674853|PIEZO2	MULTI-MSMS	OvCa99_classI_Rep5	1	509.71795654296875	2	509.714636	1017.41472	1.0314	0.00052574	3.5824	0.001826	4.6138	0.0023517	509.71628910185484	156.85	0.80124	156.85	156.55	157.35	0					18	15	2	0	0	0	0.55588	1	18370	18370		37.159	4.3467	1	29497	+		33172	20404	27320	27345	36544	36544					-0.09329223942438603
LMTCPDQVSC	10	Carbamidomethyl (C)	_LMTCPDQVSC(Carbamidomethyl (C))_	LMTC(0.008)PDQVSC(0.992)		LMTC(-21)PDQVSC(21)		0	1	0		ENST00000565934.1_1_16:8949027-8954033:+|nuORF	ENST00000565934.1_1_16:8949027-8954033:+|nuORF	ENST00000565934.1_1_16:8949027-8954033:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	577.237548828125	2	577.237952	1152.46135	0.74375	0.00042932	-1.1244	-0.00064903	-0.38061	-0.0002197	577.2370669881279	90.996	1.0156	90.996	90.738	91.753	0					65	24	4	0	0	0	0.45822	1	9768	9768		60.118	6.7668	2	9884300			33173	13833	27321	27346	36545	36545	157				-0.10878107382791313
LMTKRNLLS	9	Unmodified	_LMTKRNLLS_					0	0	0		ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	538.3153076171875	2	538.318251	1074.62195	-0.21584	-0.00011619	-4.1095	-0.0022122	-4.3253	-0.0023284	538.315698991444	71.466	1.8309	68.959	68.281	70.112	-2.5072					83	34	4	0	0	0	0.074342	2	5759	5746;5759		104.75	16.992	1	1027100			33174	12400	27322	27347	36546;36547	36547					0.08762351387917988
LMTKRNLLS	9	Unmodified	_LMTKRNLLS_					0	0	0		ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.3165283203125	2	538.318251	1074.62195	-2.0792	-0.0011192	-2.6113	-0.0014057	-4.6905	-0.002525	538.3165339155396	72.747	1.4061	69.35	68.911	70.317	-3.3961					77	26	4	0	0	0	0.019133	2	5612	5600;5612		148.04	39.955	1	1125000			33175	12400	27322	27347	36548;36549	36549					0.08762351387917988
LMTLAVRGKN	10	Unmodified	_LMTLAVRGKN_					0	0	0			REV__tr|A0A553SGU0|A0A553SGU0_NIACIRNA-bindingtranscriptionalaccessoryproteinOS=NialliacirculansOX=1397GN=CEQ21_11540PE=4SV=1	REV__tr|A0A553SGU0|A0A553SGU0_NIACIRNA-bindingtranscriptionalaccessoryproteinOS=NialliacirculansOX=1397GN=CEQ21_11540PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	551.8233642578125	2	551.823701	1101.63285	0.43989	0.00024274	2.09	0.0011533	2.5299	0.001396	551.8250227301401	141.06	0.70506	141.06	140.78	141.49	0					22	13	2	0	0	0	0.69073	1	16470	16470		31.53	4.8369	1	94435	+		33176	29736	27323	27348	36550	36550					0.08609753762220862
LMTLYRKWWLY	11	Unmodified	_LMTLYRKWWLY_					0	0	0			REV__ENSG00000118402|ENST00000369816|ELOVL4	REV__ENSG00000118402|ENST00000369816|ELOVL4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.2761840820312	3	524.951369	1571.83228	-1.4866	-0.00078039	3.585	0.001882	2.0984	0.0011016	524.9536553448485	41.942	0.46742	38.962	38.748	39.216	-2.9804					18	8	3	0	0	0	0.026505	1	1900	1900		5.6988	0	1	49129	+		33177	18393	27324	27349	36551	36551					0.06923388990094281
LMTMFSTMT	9	Unmodified	_LMTMFSTMT_					0	0	0			REV__nc|ENSG00000173706|Q9ULI3-2|HEG1	REV__nc|ENSG00000173706|Q9ULI3-2|HEG1	MULTI-MSMS	OvCa9_classI_Rep3	3	531.7373046875	2	531.737057	1061.45956	0.42225	0.00022453	0.50242	0.00026716	0.92468	0.00049168	531.7372552159616	131.11	1.6243	129.98	129.46	131.09	-1.1249					58	32	2	0	0	0	0.55588	1	10434	10434		37.159	4.3467	1	92622	+		33178	21795	27325	27350	36552	36552					-0.06871116400725441
LMTQLNDLN	9	Unmodified	_LMTQLNDLN_					0	0	0			REV__ENST00000528842.1_1_8:145537053-145537718:+|nuORF	REV__ENST00000528842.1_1_8:145537053-145537718:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.7861938476562	2	531.268424	1060.5223	-0.19388	-0.000103	-1.919	-0.0010195	-2.1129	-0.0011225	531.267227319935	69.446	0.36376	69.446	69.228	69.591	0					15	8	2	0	0	0	0.027433	1	6583	6583		54.776	12.38	1	649320	+		33179	22481	27326	27351	36553	36553					-0.005545110166849554
LMTRCMNY	8	Unmodified	_LMTRCMNY_					0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.2274169921875	2	516.22719	1030.43983	1.1192	0.00057775	-4.4597	-0.0023022	-3.3406	-0.0017245	516.2251982549955	85.209	1.4262	82.563	82.167	83.593	-2.6463					71	28	4	0	0	0	0.7224	1	7169	7169		38.806	3.6054	1	275320			33180	6182	27327	27352	36554	36554					-0.07417447620832718
LMTVLLKY	8	Unmodified	_LMTVLLKY_					0	0	0		ENSG00000163053|ENST00000295190|SLC16A14	ENSG00000163053|ENST00000295190|SLC16A14	ENSG00000163053|ENST00000295190|SLC16A14	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.25341796875	2	490.796089	979.577625	-0.0010784	-5.2927E-07	2.7326	0.0013412	2.7315	0.0013406	490.7980126900299	63.739	0.57615	60.264	60.012	60.588	-3.475					17	11	2	0	0	0	0.028476	1	4523	4523		37.028	3.5129	1	37451			33181	6259	27328	27353	36555	36555					0.08701947241729613
LMTVPKYFVL	10	Oxidation (M)	_LM(Oxidation (M))TVPKYFVL_		LM(1)TVPKYFVL		LM(62)TVPKYFVL	0	0	1		ENST00000284202.8_1_18:22006682-22007982:+|nuORF	ENST00000284202.8_1_18:22006682-22007982:+|nuORF	ENST00000284202.8_1_18:22006682-22007982:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	409.5668640136719	3	409.566632	1225.67807	1.1473	0.00046991	-1.7122	-0.00070124	-0.56482	-0.00023133	409.56595844188104	61.183	1.6447	57.753	57.345	58.99	-3.43					94	33	4	0	0	0	0.44722	1	4172	4172		61.691	15.234	1	1384300			33182	10065	27329	27354	36556	36556		289			0.07425559504713419
LMVALAKGRRA	11	Unmodified	_LMVALAKGRRA_					0	0	0		nc|ENSG00000231991|A6NMY6|ANXA2P2;ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2	nc|ENSG00000231991|A6NMY6|ANXA2P2	nc|ENSG00000231991|A6NMY6|ANXA2P2	MULTI-SECPEP	OvCa9_classI_Rep3	3	594.2649536132812	2	593.366067	1184.71758	-0.29767	-0.00017663	-3.473	-0.0020608	-3.7707	-0.0022374	593.3640326364839	98.512	0.41534	96.752	96.623	97.038	-1.7595					16	7	3	0	0	0	0.025611	1	6614	6614		27.882	4.8398	1	26544			33183	8019	27330	27355	36557	36557					0.132611242988105
LMVALAKGRRA	11	Unmodified	_LMVALAKGRRA_					0	0	0		nc|ENSG00000231991|A6NMY6|ANXA2P2;ENSG00000182718|ENST00000451270|ANXA2;nc|ENSG00000182718|P07355-2|ANXA2	nc|ENSG00000231991|A6NMY6|ANXA2P2	nc|ENSG00000231991|A6NMY6|ANXA2P2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	593.366067	1184.71758	0.0020908	1.2406E-06	-4.624	-0.0027437	-4.6219	-0.0027425	593.8645818418786	99.043	0.46709	96.718	96.536	97.003	-2.3253	-0.13963	-0.00073296	NaN	27.882	15	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26045			33184	8019	27330	27355							0.132611242988105
LMVALSSCTM	10	Oxidation (M)	_LM(Oxidation (M))VALSSCTM_		LM(1)VALSSCTM		LM(81)VALSSCTM(-81)	0	0	1		ENSG00000159495|ENST00000452443|TGM7	ENSG00000159495|ENST00000452443|TGM7	ENSG00000159495|ENST00000452443|TGM7	MULTI-MSMS	OvCa99_classI_Rep5	1	536.2477416992188	2	536.247788	1070.48102	1.3989	0.00075018	-2.3313	-0.0012502	-0.93241	-0.0005	536.2463556765667	113.9	2.2919	113.9	113.57	115.86	0					107	49	4	0	0	0	0.28791	1	12968	12968		82.305	18.999	2	6753500			33185	6016	27331	27356	36558	36558		191			-0.051397313720599414
LMVALSSCTM	10	Oxidation (M)	_LM(Oxidation (M))VALSSCTM_		LM(1)VALSSCTM		LM(79)VALSSCTM(-79)	0	0	1		ENSG00000159495|ENST00000452443|TGM7	ENSG00000159495|ENST00000452443|TGM7	ENSG00000159495|ENST00000452443|TGM7	MULTI-MSMS	OvCa9_classI_Rep2	2	536.24609375	2	536.247788	1070.48102	-0.69524	-0.00037282	-2.9866	-0.0016016	-3.6818	-0.0019744	536.246148469639	113.89	3.7057	113.77	113.37	117.07	-0.11777					126	74	2	0	0	0	0.26259	4	10798	10793;10798;10810;10852		85.359	19.556	2	608760			33186	6016	27331	27356	36559;36560;36561;36562	36560		191			-0.051397313720599414
LMVATSADVK	10	Unmodified	_LMVATSADVK_					0	0	0		CAMKMT|p.I167T|1|0.06|ENSG00000143919|chr2:44707406-44707406|T/C|missense_variant	CAMKMT|p.I167T|1|0.06|ENSG00000143919|chr2:44707406-44707406|T/C|missense_variant	CAMKMT|p.I167T|1|0.06|ENSG00000143919|chr2:44707406-44707406|T/C|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	517.7822265625	2	517.781167	1033.54778	0.96124	0.00049771	-0.53596	-0.00027751	0.42528	0.0002202	517.7806052548968	149.75	1.3835	149.75	149.31	150.69	0					54	27	4	0	0	0	0.55359	1	17536	17536		47.657	0	1	121020			33187	181	27332	27357	36563	36563					0.032349635057244086
LMVDHVTEV	9	Unmodified	_LMVDHVTEV_					0	0	0		ENST00000602875.5_1_5:139930287-139937028:-|nuORF;ENSG00000213523|ENST00000336283|SRA1	ENST00000602875.5_1_5:139930287-139937028:-|nuORF	ENST00000602875.5_1_5:139930287-139937028:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.7974243164062	2	521.765517	1041.51648	1.6734	0.00087314	0.1471	7.6751E-05	1.8205	0.00094989	521.7656925947907	82.375	0.72356	82.375	82.141	82.865	0					32	16	3	0	0	0	0.027448	1	8525	8525		63.306	33.465	1	1489200			33188	9132	27333	27358	36564	36564					-0.00261609528365625
LMVDHVTEV	9	Unmodified	_LMVDHVTEV_					0	0	0		ENST00000602875.5_1_5:139930287-139937028:-|nuORF;ENSG00000213523|ENST00000336283|SRA1	ENST00000602875.5_1_5:139930287-139937028:-|nuORF	ENST00000602875.5_1_5:139930287-139937028:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.765517	1041.51648	-0.41013	-0.00021399	-0.427	-0.0002228	-0.83713	-0.00043679	521.7653736342502	83.857	0.97623	82.31	81.974	82.95	-1.5462	-0.075099	-0.00049696	NaN	82.305	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19029			33189	9132	27333	27358							-0.00261609528365625
LMVDHVTEV	9	Unmodified	_LMVDHVTEV_					0	0	0		ENST00000602875.5_1_5:139930287-139937028:-|nuORF;ENSG00000213523|ENST00000336283|SRA1	ENST00000602875.5_1_5:139930287-139937028:-|nuORF	ENST00000602875.5_1_5:139930287-139937028:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	521.765517	1041.51648	-1.0764	-0.00056162	0.26829	0.00013999	-0.80809	-0.00042163	521.7655920507414	84.699	1.2497	82.438	81.745	82.994	-2.261	0.052144	0.0002286	NaN	82.305	29	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39302			33190	9132	27333	27358							-0.00261609528365625
LMVDHVTEV	9	Unmodified	_LMVDHVTEV_					0	0	0		ENST00000602875.5_1_5:139930287-139937028:-|nuORF;ENSG00000213523|ENST00000336283|SRA1	ENST00000602875.5_1_5:139930287-139937028:-|nuORF	ENST00000602875.5_1_5:139930287-139937028:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	521.765517	1041.51648	0.91139	0.00047553	-0.69222	-0.00036118	0.21917	0.00011435	521.7652677856768	85.066	0.4907	82.419	82.12	82.61	-2.6463	0.033847	-0.00077372	NaN	82.305	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29220			33191	9132	27333	27358							-0.00261609528365625
LMVESKDKI	9	Oxidation (M)	_LM(Oxidation (M))VESKDKI_		LM(1)VESKDKI		LM(110)VESKDKI	0	0	1			REV__nc|ENSG00000064886|Q15782-6|CHI3L2	REV__nc|ENSG00000064886|Q15782-6|CHI3L2	MULTI-MSMS	OvCa9_classI_Rep4_	4	539.7930297851562	2	539.794275	1077.574	-0.25527	-0.00013779	-2.9604	-0.001598	-3.2157	-0.0017358	539.7923318698668	128.33	2.6512	126.89	126.5	129.15	-1.4366					136	52	4	0	0	0	0.064985	1	12289	12289		110.12	16.924	1	201700	+		33192	16778	27334	27359	36565	36565		397			0.03831232677202934
LMVGRAVDLF	10	Unmodified	_LMVGRAVDLF_					0	0	0		tr|A0A7D6ZW07|A0A7D6ZW07_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17125PE=4SV=1	tr|A0A7D6ZW07|A0A7D6ZW07_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17125PE=4SV=1	tr|A0A7D6ZW07|A0A7D6ZW07_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17125PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	560.815185546875	2	560.812802	1119.61105	1.8448	0.0010346	0.6217	0.00034866	2.4665	0.0013832	560.8132755155216	146.19	1.6293	146.19	145.73	147.36	0					85	32	5	0	0	0	0.32926	1	17113	17113		77.318	0.54344	1	1540700			33193	35822	27335	27360	36566	36566					0.05602949013609759
LMVIETTIH	9	Unmodified	_LMVIETTIH_					0	0	0			REV__nc|ENSG00000204681|Q9UBS5-5|GABBR1	REV__nc|ENSG00000204681|Q9UBS5-5|GABBR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.2649536132812	2	528.791535	1055.56852	-1.0971	-0.00058015	-2.0905	-0.0011054	-3.1876	-0.0016856	528.7895159283835	94.259	0.83652	91.791	91.524	92.36	-2.4685					22	16	2	0	0	0	0.027462	1	8309	8309		18.324	0	1	42369	+		33194	23178	27336	27361	36567	36567					0.04295553885390291
LMVIETTIH	9	Unmodified	_LMVIETTIH_					0	0	0			REV__nc|ENSG00000204681|Q9UBS5-5|GABBR1	REV__nc|ENSG00000204681|Q9UBS5-5|GABBR1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	528.791535	1055.56852	-0.29339	-0.00015514	-2.5397	-0.001343	-2.8331	-0.0014981	528.7896498443181	92.88	0.92084	91.712	91.498	92.418	-1.168	-0.023699	-0.00026683	NaN	24.203	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37893	+		33195	23178	27336	27361							0.04295553885390291
LMVIETTIH	9	Unmodified	_LMVIETTIH_					0	0	0			REV__nc|ENSG00000204681|Q9UBS5-5|GABBR1	REV__nc|ENSG00000204681|Q9UBS5-5|GABBR1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	528.791535	1055.56852	-1.3461	-0.0007118	-2.1673	-0.0011461	-3.5134	-0.0018579	528.7899759962725	93.665	0.76395	91.704	91.476	92.24	-1.9617	-0.031677	0.00012699	NaN	24.203	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76433	+		33196	23178	27336	27361							0.04295553885390291
LMVLGLLTI	9	Unmodified	_LMVLGLLTI_					0	0	0		BTN1A1|p.E390Lfs*51|1|0.05|ENSG00000124557|chr6:26508760-26508761|-/CTTGATTTATTGGCAATGCTTCAATATTCAAATA|frameshift_variant;ENSG00000124557|ENST00000684113|BTN1A1;BTN1A1|p.T368Dfs*2|1|0.57|ENSG00000124557|chr6:26508693-26508694|-/A|frameshift_variant;BTN1A1|p.H315Tfs*65|1|0.03|ENSG00000124557|chr6:26508533-26508533|C/-|frameshift_variant	BTN1A1|p.E390Lfs*51|1|0.05|ENSG00000124557|chr6:26508760-26508761|-/CTTGATTTATTGGCAATGCTTCAATATTCAAATA|frameshift_variant	BTN1A1|p.E390Lfs*51|1|0.05|ENSG00000124557|chr6:26508760-26508761|-/CTTGATTTATTGGCAATGCTTCAATATTCAAATA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	486.808837890625	2	486.811739	971.608925	-0.096421	-4.6939E-05	-3.3474	-0.0016296	-3.4438	-0.0016765	486.80997360124303	130.23	1.3225	129.12	128.88	130.21	-1.1121					55	26	3	0	0	0	0.59983	1	10370	10370		31.955	0.42505	1	142420			33197	163	27337	27362	36568	36568					0.12198520275831015
LMVLMVFLD	9	Unmodified	_LMVLMVFLD_					0	0	0		ENST00000374866.7_1_2:189917503-189917647:-|nuORF	ENST00000374866.7_1_2:189917503-189917647:-|nuORF	ENST00000374866.7_1_2:189917503-189917647:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.331298828125	2	540.795232	1079.57591	0.83517	0.00045165	4.3965	0.0023776	5.2317	0.0028293	540.7967223694016	138.87	0.3006	137.34	137.19	137.49	-1.5284					8	5	2	0	0	0	0.027462	1	13535	13535		31.955	8.9124	1	7451.8			33198	11042	27338	27363	36569	36569					0.039305701614694044
LMVLTEFME	9	Unmodified	_LMVLTEFME_					0	0	0		nc|ENSG00000106123|O15197-2|EPHB6;nc|ENSG00000106123|O15197|EPHB6;ENSG00000106123|ENST00000652003|EPHB6	nc|ENSG00000106123|O15197-2|EPHB6	nc|ENSG00000106123|O15197-2|EPHB6	MULTI-SECPEP	OvCa9_classI_Rep2	2	556.7914428710938	2	556.771954	1111.52935	0.25344	0.00014111	2.0208	0.0011252	2.2743	0.0012663	556.7736735245162	67.158	0.49498	64.497	64.298	64.793	-2.661					12	9	2	0	0	0	0.027462	1	5265	5265		42.474	14.592	1	7882.6			33199	2530	27339	27364	36570	36570					-0.021949144604832327
LMVLVPPVD	9	Unmodified	_LMVLVPPVD_					0	0	0		ENSG00000185156|ENST00000329805|MFSD6L	ENSG00000185156|ENST00000329805|MFSD6L	ENSG00000185156|ENST00000329805|MFSD6L	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.3340148925781	2	491.785721	981.55689	0.60778	0.0002989	3.2756	0.0016109	3.8834	0.0019098	491.78704807859384	45.115	0.54753	42.405	42.149	42.697	-2.7097					14	10	2	0	0	0	0.027462	1	2617	2617		12.207	0	1	15762			33200	8230	27340	27365	36571	36571					0.06537356862054367
LMVNFKVNN	9	Unmodified	_LMVNFKVNN_					0	0	0			REV__ENST00000409774.5_1_2:37326175-37326319:+|nuORF	REV__ENST00000409774.5_1_2:37326175-37326319:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.8269653320312	2	539.789327	1077.5641	-1.1733	-0.00063334	0.77812	0.00042002	-0.39519	-0.00021332	539.789626014136	93.923	1.0004	91.416	91.171	92.171	-2.5072					48	20	3	0	0	0	0.027448	1	8204	8204		53.351	0	1	444630	+		33201	25478	27341	27366	36572	36572					0.028420894624787252
LMVPIQVHSL	10	Unmodified	_LMVPIQVHSL_					0	0	0			REV__ENSG00000150867|ENST00000376573|PIP4K2A	REV__ENSG00000150867|ENST00000376573|PIP4K2A	MULTI-MSMS	OvCa99_classI_Rep5	1	568.8275146484375	2	568.828452	1135.64235	1.9351	0.0011007	-2.2342	-0.0012709	-0.2991	-0.00017014	568.8269093682014	122.49	0.54789	122.49	122.22	122.77	0					26	11	3	0	0	0	0.5675	1	14099	14099		45.972	1.5951	1	671780	+		33202	20205	27342	27367	36573	36573					0.07995522047735903
LMVPPLQC	8	Unmodified	_LMVPPLQC_					0	0	0		ENSG00000117036|ENST00000368192|ETV3	ENSG00000117036|ENST00000368192|ETV3	ENSG00000117036|ENST00000368192|ETV3	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.7514343261719	2	450.737717	899.460881	2.1083	0.00095027	1.6373	0.000738	3.7456	0.0016883	450.73755861712044	77.866	0.21013	77.866	77.714	77.924	0					5	4	2	0	0	0	0.028476	1	7870	7870		19.36	0	1	195230			33203	3232	27343	27368	36574	36574					0.007128857503175823
LMVPRQILQPA	11	Unmodified	_LMVPRQILQPA_					0	0	0			REV__nc|ENSG00000135365|Q96BD5-2|PHF21A	REV__nc|ENSG00000135365|Q96BD5-2|PHF21A	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.3665161132812	2	633.373558	1264.73256	-3.7067	-0.0023477	-3.0372	-0.0019237	-6.7439	-0.0042714	633.3714685413702	153.42	3.7144	151.96	150.68	154.4	-1.4516					273	94	4	0	0	0	0.72244	1	15084	15084		21.96	1.013	1	395790	+		33204	19279	27344	27369	36575	36575					0.11078571376151558
LMVQLLHKL	9	Unmodified	_LMVQLLHKL_					0	0	0		ENSG00000126749|ENST00000599672|EMG1	ENSG00000126749|ENST00000599672|EMG1	ENSG00000126749|ENST00000599672|EMG1	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.2216186523438	2	547.841362	1093.66817	2.4597	0.0013475	0.22424	0.00012285	2.684	0.0014704	548.3431474710225	115.84	0.97638	115.84	115.35	116.32	0					26	20	2	0	0	0	0.027441	1	13257	13257		45.952	0	1	296060			33205	3796	27345	27370	36576	36576					0.12508416290006608
LMVVAQLLT	9	Unmodified	_LMVVAQLLT_					0	0	0			REV__ENST00000372745.1_1_10:75893850-75896410:-|nuORF	REV__ENST00000372745.1_1_10:75893850-75896410:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.28021240234375	2	494.298996	986.583439	0.65531	0.00032392	-2.2193	-0.001097	-1.564	-0.0007731	494.2977104795679	114.95	0.88596	114.95	114.6	115.49	0					26	18	2	0	0	0	0.027392	1	13103	13103		53.351	0	1	87291	+		33206	25013	27346	27371	36577	36577					0.08961045753392227
LMVVGKCVCI	10	Oxidation (M)	_LM(Oxidation (M))VVGKCVCI_		LM(1)VVGKCVCI		LM(61)VVGKCVCI	0	0	1		ENST00000321599.8_2_3:49762383-49762692:-|nuORF	ENST00000321599.8_2_3:49762383-49762692:-|nuORF	ENST00000321599.8_2_3:49762383-49762692:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	540.7835693359375	2	540.784341	1079.55413	2.2041	0.001192	-3.9225	-0.0021212	-1.7183	-0.00092925	540.782116973443	93.779	0.80182	93.779	93.632	94.433	0					28	18	2	0	0	0	0.45225	1	10202	10202		60.972	16.595	1	829440			33207	10375	27347	27372	36578	36578		296			0.017534421412392476
LMWFFVSL	8	Unmodified	_LMWFFVSL_					0	0	0			REV__nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	REV__nc|ENSG00000164393|Q8IZF7-2|ADGRF2P	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.3069458007812	2	521.775157	1041.53576	-0.66611	-0.00034756	-0.60973	-0.00031814	-1.2758	-0.0006657	521.7748740363667	90.361	1.7283	88.28	87.85	89.578	-2.0805					54	31	3	0	0	0	0.028476	1	5633	5633		28.254	0	1	91980	+		33208	28970	27348	27373	36579	36579					0.016653915532060637
LMWRRKFWKMM	11	Unmodified	_LMWRRKFWKMM_					0	0	0		ENST00000540269.6_1_16:84778391-84778577:+|nuORF	ENST00000540269.6_1_16:84778391-84778577:+|nuORF	ENST00000540269.6_1_16:84778391-84778577:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.7781982421875	3	538.2857	1611.83527	-0.89622	-0.00048242	0.71561	0.0003852	-0.18061	-9.7219E-05	538.2860931296252	63.9	0.43708	60.425	60.298	60.735	-3.475					10	8	2	0	0	0	0.02653	1	4510	4510		6.3209	0.31984	1	39624			33209	13450	27349	27374	36580	36580					0.05382617571558512
LMYECSVTGF	10	Unmodified	_LMYECSVTGF_					0	0	0			REV__nc|ENSG00000175182|Q6UXB0-1|FAM131A	REV__nc|ENSG00000175182|Q6UXB0-1|FAM131A	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.8093872070312	2	575.251385	1148.48822	0.61994	0.00035662	2.3756	0.0013666	2.9955	0.0017232	575.751535236021	66.917	0.43358	66.917	66.779	67.212	0					16	10	2	0	0	0	0.027021	1	6230	6230		15.642	9.3292	1	338440	+		33210	29015	27350	27375	36581	36581					-0.08008675499945639
LMYKFAID	8	Unmodified	_LMYKFAID_					0	0	0		tr|A0A7D6VS35|A0A7D6VS35_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03420PE=4SV=1	tr|A0A7D6VS35|A0A7D6VS35_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03420PE=4SV=1	tr|A0A7D6VS35|A0A7D6VS35_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03420PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.2947082519531	2	500.762246	999.50994	0.95663	0.00047904	2.8693	0.0014368	3.8259	0.0019159	500.7635067179365	87.563	0.68729	86.132	85.841	86.528	-1.4311					24	13	2	0	0	0	0.028476	1	7609	7609		57.811	6.4758	1	49428			33211	34982	27351	27376	36582	36582					0.010164973109226594
LNAAALVYDLH	11	Unmodified	_LNAAALVYDLH_					0	0	0			REV__UBA1|p.M766L|1|0.04|ENSG00000130985|chrX:47211057-47211057|A/C|missense_variant	REV__UBA1|p.M766L|1|0.04|ENSG00000130985|chrX:47211057-47211057|A/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	600.3233642578125	2	600.324588	1198.63462	-2.9074	-0.0017454	1.1557	0.00069379	-1.7518	-0.0010516	600.3251735089444	151.69	1.358	150.74	150.35	151.71	-0.95645					71	26	4	0	0	0	0.67529	1	12943	12943		37.812	7.4938	1	229880	+		33212	32742	27352	27377	36583	36583					0.043250860517900946
LNAIISIKP	9	Unmodified	_LNAIISIKP_					0	0	0		ENST00000360409.7_1_2:206659803-206659965:+|nuORF	ENST00000360409.7_1_2:206659803-206659965:+|nuORF	ENST00000360409.7_1_2:206659803-206659965:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.7755432128906	2	484.810585	967.606617	2.925	0.0014181	-0.95989	-0.00046536	1.9651	0.00095271	484.80982074275187	89.577	0.41061	89.577	89.394	89.804	0					14	9	2	0	0	0	0.027455	1	9592	9592		14.137	0	1	479970			33213	10772	27353	27378	36584	36584					0.12151807862380792
LNAKLPKSIDL	11	Unmodified	_LNAKLPKSIDL_					0	0	0			REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.369140625	2	606.371538	1210.72852	-1.3399	-0.00081245	-1.8512	-0.0011225	-3.191	-0.001935	606.3703052098949	148.27	2.4393	146.84	145.43	147.87	-1.4351					149	49	5	0	0	0	0.71789	1	14648	14648		23.523	2.6855	1	591330	+		33214	19085	27354	27379	36585	36585					0.13158805154080255
LNALGFYVR	9	Unmodified	_LNALGFYVR_					0	0	0		ENST00000594671.5_1_19:4676093-4676540:-|nuORF	ENST00000594671.5_1_19:4676093-4676540:-|nuORF	ENST00000594671.5_1_19:4676093-4676540:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.7783203125	2	526.798009	1051.58147	-0.48902	-0.00025762	-4.1246	-0.0021728	-4.6136	-0.0024304	526.7956575347525	47.533	0.43276	47.533	47.379	47.812	0					22	9	3	0	0	0	0.027462	1	3460	3460		21.96	0	1	380790			33215	14166	27355	27380	36586	36586					0.05773753059793307
LNAPDIPLIIG	11	Unmodified	_LNAPDIPLIIG_					0	0	0		tr|A0A7D6VVK6|A0A7D6VVK6_9CLOTSialateO-acetylesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_11585PE=4SV=1	tr|A0A7D6VVK6|A0A7D6VVK6_9CLOTSialateO-acetylesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_11585PE=4SV=1	tr|A0A7D6VVK6|A0A7D6VVK6_9CLOTSialateO-acetylesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_11585PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.8070068359375	2	568.339707	1134.66486	0.47754	0.00027141	0.43107	0.00024499	0.90861	0.0005164	568.3392475245967	69.195	0.94772	66.38	65.863	66.811	-2.8143					25	18	2	0	0	0	0.025298	1	3096	3096		39.253	4.0521	1	18561			33216	35223	27356	27381	36587	36587					0.10291444716995102
LNAPDIPLIIG	11	Unmodified	_LNAPDIPLIIG_					0	0	0		tr|A0A7D6VVK6|A0A7D6VVK6_9CLOTSialateO-acetylesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_11585PE=4SV=1	tr|A0A7D6VVK6|A0A7D6VVK6_9CLOTSialateO-acetylesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_11585PE=4SV=1	tr|A0A7D6VVK6|A0A7D6VVK6_9CLOTSialateO-acetylesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_11585PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	568.339707	1134.66486	-0.2108	-0.00011981	1.1374	0.00064645	0.92663	0.00052664	568.8420497496284	66.495	0.33284	66.495	66.328	66.661	0	0.057658	0.00020086	NaN	31.53	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228630			33217	35223	27356	27381							0.10291444716995102
LNAQNQKSI	9	Unmodified	_LNAQNQKSI_					0	0	0			REV__ENST00000473253.5_1_3:174581768-175298945:+|nuORF	REV__ENST00000473253.5_1_3:174581768-175298945:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.281005859375	2	508.28018	1014.54581	-0.41244	-0.00020964	0.63019	0.00032031	0.21775	0.00011068	508.28034526964467	77.711	1.3438	74.894	74.536	75.88	-2.8165					74	27	4	0	0	0	0.3076	1	6269	6269		62.107	5.6736	1	1457800	+		33218	26327	27357	27382	36588	36588					0.03911670812135526
LNARPARPF	9	Unmodified	_LNARPARPF_					0	0	0			REV__ENST00000487667.5_1_6:33378482-33378665:+|nuORF	REV__ENST00000487667.5_1_6:33378482-33378665:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.2902221679688	2	521.30125	1040.58795	1.3016	0.0006785	1.6215	0.0008453	2.9231	0.0015238	521.301852261516	96.839	0.298	96.839	96.71	97.008	0					9	6	2	0	0	0	0.027433	1	10627	10627		38.806	0	1	200320	+		33219	26606	27358	27383	36589	36589					0.0692769101117392
LNATRKPM	8	Oxidation (M)	_LNATRKPM(Oxidation (M))_		LNATRKPM(1)		LNATRKPM(53)	0	0	1		ENSG00000162391|ENST00000302250|FAM151A	ENSG00000162391|ENST00000302250|FAM151A	ENSG00000162391|ENST00000302250|FAM151A	MULTI-MSMS	OvCa99_classI_Rep5	1	473.75848388671875	2	473.760569	945.506586	-0.67044	-0.00031763	-1.9201	-0.00090966	-2.5905	-0.0012273	473.7595866449214	36.374	0.85677	36.374	36.074	36.931	0					51	18	4	0	0	0	0.65062	1	1932	1932		53.351	6.585	1	2231800			33220	6176	27359	27384	36590	36590		193			0.03165247256924886
LNAVKLADL	9	Unmodified	_LNAVKLADL_					0	0	0		tr|A0A553SFH8|A0A553SFH8_NIACIDNA3'-5'helicaseOS=NialliacirculansOX=1397GN=CEQ21_08910PE=3SV=1	tr|A0A553SFH8|A0A553SFH8_NIACIDNA3'-5'helicaseOS=NialliacirculansOX=1397GN=CEQ21_08910PE=3SV=1	tr|A0A553SFH8|A0A553SFH8_NIACIDNA3'-5'helicaseOS=NialliacirculansOX=1397GN=CEQ21_08910PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	478.7939453125	2	478.792392	955.570232	3.8805	0.0018579	-1.9866	-0.00095116	1.8939	0.00090679	478.79161162701513	88.232	0.59207	88.232	88.003	88.595	0					17	13	2	0	0	0	0.10363	1	9379	9379		96.19	2.995	1	1246900			33221	33040	27360	27385	36591	36591					0.0906693096563913
LNAVLQKVE	9	Unmodified	_LNAVLQKVE_					0	0	0			REV__ARRDC3|p.R251H|1|0.16|ENSG00000113369|chr5:91375040-91375040|C/T|missense_variant	REV__ARRDC3|p.R251H|1|0.16|ENSG00000113369|chr5:91375040-91375040|C/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.281005859375	2	507.303124	1012.5917	-0.29899	-0.00015168	0.4807	0.00024386	0.18171	9.2181E-05	507.3028109556789	78.218	0.48352	75.402	75.165	75.649	-2.8165					14	9	2	0	0	0	0.027462	1	6269	6269		37.159	15.199	1	25378	+		33222	15664	27361	27386	36592	36592					0.0859031599438822
LNCNLYEMM	9	Unmodified	_LNCNLYEMM_					0	0	0		ENST00000503900.1_1_5:75206464-75206944:+|nuORF	ENST00000503900.1_1_5:75206464-75206944:+|nuORF	ENST00000503900.1_1_5:75206464-75206944:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.812255859375	2	565.737588	1129.46062	1.8088	0.0010233	0.11638	6.5841E-05	1.9251	0.0010891	565.7375369494029	109.09	0.39359	109.09	108.89	109.28	0					12	8	2	0	0	0	0.027462	1	12347	12347		11.511	2.3281	1	187850			33223	12869	27362	27387	36593	36593					-0.09892902031833728
LNCSLCCSLL	10	3 Carbamidomethyl (C)	_LNC(Carbamidomethyl (C))SLC(Carbamidomethyl (C))C(Carbamidomethyl (C))SLL_	LNC(1)SLC(1)C(1)SLL		LNC(44)SLC(44)C(44)SLL		0	3	0			REV__ENST00000461724.5_1_3:101546878-101547004:+|nuORF	REV__ENST00000461724.5_1_3:101546878-101547004:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	620.2833862304688	2	620.280151	1238.54575	0.97612	0.00060547	4.0297	0.0024996	5.0058	0.003105	620.2825283281682	131.93	0.89603	130.8	130.59	131.49	-1.1249					36	17	3	0	0	0	0.58067	1	10553	10553		44.377	8.7589	1	54019	+		33224	26098	27363	27388	36594	36594	321;322;323				-0.06398156566024227
LNDELRLEKL	10	Unmodified	_LNDELRLEKL_					0	0	0			REV__ENSG00000188306|ENST00000340806|LRRIQ4	REV__ENSG00000188306|ENST00000340806|LRRIQ4	MULTI-MSMS	OvCa9_classI_Rep4_	4	621.8582763671875	2	621.856252	1241.69795	-0.94778	-0.00058939	0.46206	0.00028734	-0.48572	-0.00030205	621.856419514009	71.406	1.2717	67.95	67.677	68.949	-3.4563					72	25	4	0	0	0	0.11493	2	5434	5434;5459		109.48	19.785	1	1126400	+		33225	22704	27364	27389	36595;36596	36595					0.08677026769032636
LNDEPLEE	8	Unmodified	_LNDEPLEE_					0	0	0			REV__nc|ENSG00000185436|Q8IU57-2|IFNLR1	REV__nc|ENSG00000185436|Q8IU57-2|IFNLR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2615661621094	2	479.72183	957.429106	-0.6724	-0.00032257	2.1345	0.0010239	1.4621	0.00070138	479.72284013673357	41.887	0.30172	41.887	41.766	42.068	0					9	6	2	0	0	0	0.028476	1	2671	2671		42.396	6.7778	1	32330	+		33226	22502	27365	27390	36597	36597					-0.05131112198284882
LNDFVYIKEP	10	Unmodified	_LNDFVYIKEP_					0	0	0		tr|A0A7D6VYS2|A0A7D6VYS2_9CLOTHADfamilyhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22820PE=4SV=1	tr|A0A7D6VYS2|A0A7D6VYS2_9CLOTHADfamilyhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22820PE=4SV=1	tr|A0A7D6VYS2|A0A7D6VYS2_9CLOTHADfamilyhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22820PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	619.3576049804688	2	619.326796	1236.63904	0.48454	0.00030009	-4.0016	-0.0024783	-3.5171	-0.0021782	619.3243843131635	105.59	0.34891	105.59	105.49	105.83	0					10	7	2	0	0	0	0.026968	1	11855	11855		22.58	3.4761	1	221090			33227	35336	27366	27391	36598	36598					0.03018550474712356
LNDGYVRIL	9	Unmodified	_LNDGYVRIL_					0	0	0			REV__L1PA11_dup580|chr2:214963946-214966413:+|1.0797114683140654|0.244988541359441|2.14|429.0|132|2|anti-sense	REV__L1PA11_dup580|chr2:214963946-214966413:+|1.0797114683140654|0.244988541359441|2.14|429.0|132|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.81201171875	2	531.800749	1061.58694	-0.42189	-0.00022436	-0.40224	-0.00021391	-0.82414	-0.00043828	531.8006824378189	113.73	1.1461	112.29	111.95	113.1	-1.4461					49	22	4	0	0	0	0.027462	1	10508	10508		42.396	1.618	1	50843	+		33228	28459	27367	27392	36599	36599					0.05861431851622001
LNDIRIGYK	9	Unmodified	_LNDIRIGYK_					0	0	0			REV__nc|ENSG00000075651|Q13393-3|PLD1	REV__nc|ENSG00000075651|Q13393-3|PLD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.2808837890625	2	546.314023	1090.61349	-0.055112	-3.0108E-05	-1.253	-0.00068452	-1.3081	-0.00071463	546.3137325810288	64.636	0.72966	61.15	60.822	61.552	-3.4854					20	14	2	0	0	0	0.027462	1	4641	4641		47.657	3.5405	1	26524	+		33229	28733	27368	27393	36600	36600					0.07181120742939129
LNDIRIGYK	9	Unmodified	_LNDIRIGYK_					0	0	0			REV__nc|ENSG00000075651|Q13393-3|PLD1	REV__nc|ENSG00000075651|Q13393-3|PLD1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	546.314023	1090.61349	-1.1007	-0.0006013	0.29683	0.00016216	-0.80382	-0.00043914	546.3147032710937	63.773	0.78325	61.028	60.586	61.369	-2.7444	-0.060981	0.00084975	NaN	82.241	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21272	+		33230	28733	27368	27393							0.07181120742939129
LNDPTRSIE	9	Unmodified	_LNDPTRSIE_					0	0	0			REV__tr|A0A7D6ZHZ7|A0A7D6ZHZ7_9CLOTHemeNO-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01900PE=4SV=1	REV__tr|A0A7D6ZHZ7|A0A7D6ZHZ7_9CLOTHemeNO-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01900PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	522.8115844726562	2	522.769645	1043.52474	0.59757	0.00031239	3.1214	0.0016317	3.7189	0.0019441	522.7711447698572	119.59	1.2827	118.56	118.18	119.46	-1.0271					62	25	3	0	0	0	0.027137	1	9110	9110		77.318	20.597	1	75883	+		33231	32042	27369	27394	36601	36601					0.004716607126283634
LNDVCFFGL	9	Unmodified	_LNDVCFFGL_					0	0	0			REV__tr|A0A553SJ31|A0A553SJ31_NIACIRNaseadapterRapZOS=NialliacirculansOX=1397GN=rapZPE=3SV=1	REV__tr|A0A553SJ31|A0A553SJ31_NIACIRNaseadapterRapZOS=NialliacirculansOX=1397GN=rapZPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	514.2508544921875	2	514.249503	1026.48445	1.5407	0.00079232	0.76232	0.00039202	2.303	0.0011843	514.2499690557825	135.24	0.41853	135.24	134.99	135.41	0					13	8	2	0	0	0	0.34496	1	15745	15745		57.811	19.005	1	147500	+		33232	29959	27370	27395	36602	36602					-0.027729772114980733
LNDVQRFIA	9	Unmodified	_LNDVQRFIA_					0	0	0		tr|A0A553SJA2|A0A553SJA2_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16385PE=4SV=1	tr|A0A553SJA2|A0A553SJA2_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16385PE=4SV=1	tr|A0A553SJA2|A0A553SJA2_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16385PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.2765502929688	2	538.298373	1074.58219	2.2142	0.0011919	-1.4008	-0.00075405	0.81344	0.00043787	538.2975757458311	137.33	0.3378	137.33	137.06	137.4	0					9	6	2	0	0	0	0.027441	1	16023	16023		49.442	0	1	38005			33233	33481	27371	27396	36603	36603					0.047885477088584594
LNEAANKVA	9	Unmodified	_LNEAANKVA_					0	0	0			REV__tr|A0A553SKD3|A0A553SKD3_NIACISPORdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18380PE=4SV=1	REV__tr|A0A553SKD3|A0A553SKD3_NIACISPORdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18380PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	465.2566223144531	2	465.256174	928.497795	2.7254	0.001268	-0.16803	-7.8175E-05	2.5574	0.0011899	465.25607317005046	86.619	0.41223	86.619	86.431	86.844	0					18	9	3	0	0	0	0.21231	1	9146	9146		74.255	2.3776	1	701340	+		33234	30111	27372	27397	36604	36604					0.030685968920806772
LNEAANKVA	9	Unmodified	_LNEAANKVA_					0	0	0			REV__tr|A0A553SKD3|A0A553SKD3_NIACISPORdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18380PE=4SV=1	REV__tr|A0A553SKD3|A0A553SKD3_NIACISPORdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18380PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	465.256174	928.497795	2.7254	0.001268	-0.16803	-7.8175E-05	2.5574	0.0011899	465.25607317005046	86.619	0.41223	86.619	86.431	86.844	0	0	0	NaN	74.255	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	701340	+		33235	30111	27372	27397							0.030685968920806772
LNEATLVFW	9	Unmodified	_LNEATLVFW_					0	0	0			REV__nc|ENSG00000106976|Q05193-5|DNM1	REV__nc|ENSG00000106976|Q05193-5|DNM1	MULTI-MSMS	OvCa99_classI_Rep5	1	546.788818359375	2	546.78985	1091.56515	0.93582	0.0005117	-2.9363	-0.0016055	-2.0005	-0.0010938	546.7881225030743	155.8	2.8358	155.8	155.12	157.96	0					140	55	3	0	0	0	0.5811	1	18401	18401		34.173	1.422	1	297140	+		33236	17832	27373	27398	36605	36605					0.023026271030403223
LNECLLILRL	10	Unmodified	_LNECLLILRL_					0	0	0			REV__L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|291|2|anti-sense	REV__L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|291|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	400.5789489746094	3	400.577531	1198.71076	1.9518	0.00078186	1.5562	0.00062338	3.508	0.0014052	400.57806803524926	20.369	1.1156	19.03	18.851	19.966	-1.3386					35	22	2	0	0	0	0.62712	1	53	53		38.754	3.5754	1	160930	+		33237	28562	27374	27399	36606	36606					0.11935766627584599
LNEDFGELM	9	Unmodified	_LNEDFGELM_					0	0	0			REV__nc|ENSG00000160145|O60229|KALRN	REV__nc|ENSG00000160145|O60229|KALRN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.8152465820312	2	534.239332	1066.46411	-0.77091	-0.00041185	-0.77283	-0.00041287	-1.5437	-0.00082473	534.2386400897208	75.619	0.53545	72.68	72.352	72.888	-2.9389					17	10	2	0	0	0	0.027448	1	5950	5950		53.351	0	1	24975	+		33238	20640	27375	27400	36607	36607					-0.06646192661969508
LNEGEVYFQL	10	Unmodified	_LNEGEVYFQL_					0	0	0		tr|A0A7D7ACM1|A0A7D7ACM1_9CLOTSporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19675PE=4SV=1	tr|A0A7D7ACM1|A0A7D7ACM1_9CLOTSporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19675PE=4SV=1	tr|A0A7D7ACM1|A0A7D7ACM1_9CLOTSporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19675PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	606.3292846679688	2	606.300778	1210.587	2.0007	0.001213	-1.3514	-0.00081936	0.64927	0.00039365	606.2999405376919	135.98	0.84633	135.98	135.69	136.54	0					20	17	2	0	0	0	0.02676	1	15883	15883		58.23	26.275	1	67048			33239	36231	27376	27401	36608	36608					-0.009866129390502465
LNEIDASYEDL	11	Unmodified	_LNEIDASYEDL_					0	0	0		nc|ENSG00000114268|Q16877-2|PFKFB4	nc|ENSG00000114268|Q16877-2|PFKFB4	nc|ENSG00000114268|Q16877-2|PFKFB4	MULTI-SECPEP	OvCa99_classI_Rep5	1	428.2164611816406	3	427.866352	1280.57723	-0.61844	-0.00026461	-0.18732	-8.0146E-05	-0.80575	-0.00034475	427.86620574746706	42.064	0.38856	42.064	41.897	42.286	0					17	8	3	0	0	0	0.025568	1	2693	2693		21.032	0	1	137960			33240	14970	27377	27402	36609	36609					-0.05183845735086834
LNELNELY	8	Unmodified	_LNELNELY_					0	0	0			REV__ENSG00000179715|ENST00000546455|PCED1B	REV__ENSG00000179715|ENST00000546455|PCED1B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	504.2797546386719	2	504.25584	1006.49713	-1.6592	-0.00083665	2.0182	0.0010177	0.35901	0.00018103	504.25399816334004	50.717	0.5162	47.544	47.205	47.721	-3.1734					22	9	3	0	0	0	0.028476	1	2953	2953		68.787	0	1	28869	+		33241	22138	27378	27403	36610	36610					-0.005862425476152566
LNELQQPDL	9	Unmodified	_LNELQQPDL_					0	0	0		nc|ENSG00000162852|Q6PJW8-2|CNST;ENSG00000162852|ENST00000366513|CNST	nc|ENSG00000162852|Q6PJW8-2|CNST	nc|ENSG00000162852|Q6PJW8-2|CNST	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.2510375976562	2	535.279846	1068.54514	-0.74285	-0.00039764	1.91	0.0010224	1.1672	0.00062476	535.281169904807	59.411	0.30814	59.411	59.265	59.573	0					12	7	2	0	0	0	0.027447	1	5128	5128		39.253	6.4404	1	268420			33242	6241	27379	27404	36611	36611					0.013608313724262189
LNENQLRILL	10	Unmodified	_LNENQLRILL_					0	0	0		ENSG00000146858|ENST00000275766|ZC3HAV1L	ENSG00000146858|ENST00000275766|ZC3HAV1L	ENSG00000146858|ENST00000275766|ZC3HAV1L	MULTI-MSMS	OvCa9_classI_Rep2	2	409.24658203125	3	409.24695	1224.71902	0.47988	0.00019639	-0.47505	-0.00019441	0.0048359	1.9791E-06	409.2467621212051	60.008	1.3036	57.237	56.672	57.976	-2.7702					78	24	4	0	0	0	0.44722	1	4387	4387		61.691	3.445	1	597550			33243	5313	27380	27405	36612	36612					0.11565036868569223
LNERLMYH	8	Unmodified	_LNERLMYH_					0	0	0			REV__ENSG00000132470|ENST00000200181|ITGB4	REV__ENSG00000132470|ENST00000200181|ITGB4	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.788818359375	2	538.271301	1074.52805	0.22469	0.00012094	-4.3634	-0.0023487	-4.1387	-0.0022277	538.2690004807587	57.736	0.63146	57.736	57.522	58.153	0					24	14	3	0	0	0	0.028476	1	4858	4858		25.45	1.9275	1	631380	+		33244	19082	27381	27406	36613	36613					-0.006233677143654859
LNERSANRQ	9	Unmodified	_LNERSANRQ_					0	0	0			REV__ENSG00000113555|ENST00000231484|PCDH12	REV__ENSG00000113555|ENST00000231484|PCDH12	MULTI-MSMS	OvCa99_classI_Rep5	1	544.2830810546875	2	544.283786	1086.55302	-0.9764	-0.00053144	0.97092	0.00052846	-0.0054762	-2.9806E-06	544.2840263216909	27.117	0.34933	27.117	26.942	27.291	0					15	6	3	0	0	0	0.55011	1	768	768		37.812	0	1	173320	+		33245	18155	27382	27407	36614	36614					0.013204034125692488
LNESHGLLL	9	Unmodified	_LNESHGLLL_					0	0	0		JAK1|p.N714Kfs*60|1|0.11|ENSG00000162434|chr1:64844863-64844864|-/CGAGCACC|frameshift_variant;ENST00000471473.1_1_1:65309838-65309892:-|nuORF	JAK1|p.N714Kfs*60|1|0.11|ENSG00000162434|chr1:64844863-64844864|-/CGAGCACC|frameshift_variant	JAK1|p.N714Kfs*60|1|0.11|ENSG00000162434|chr1:64844863-64844864|-/CGAGCACC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.29913330078125	2	498.279649	994.544745	1.9476	0.00097044	0.136	6.7764E-05	2.0836	0.0010382	498.2823175051307	99.984	0.2971	99.984	99.896	100.19	0					10	6	2	0	0	0	0.027091	1	11080	11080		82.305	18.098	1	224210			33246	14513	27383	27408	36615	36615					0.047254564432591906
LNETLLNVAL	10	Unmodified	_LNETLLNVAL_					0	0	0		tr|A0A553ST06|A0A553ST06_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_04175PE=3SV=1	tr|A0A553ST06|A0A553ST06_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_04175PE=3SV=1	tr|A0A553ST06|A0A553ST06_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_04175PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	550.3263549804688	2	550.321514	1098.62847	-1.311	-0.00072148	-0.65106	-0.00035829	-1.9621	-0.0010798	550.3209383256542	87.341	1.4834	85.164	84.531	86.015	-2.1768					62	28	3	0	0	0	0.026826	1	5172	5172		44.377	10.456	1	225660			33247	34445	27384	27409	36616	36616					0.08310567820262804
LNETLLNVAL	10	Unmodified	_LNETLLNVAL_					0	0	0		tr|A0A553ST06|A0A553ST06_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_04175PE=3SV=1	tr|A0A553ST06|A0A553ST06_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_04175PE=3SV=1	tr|A0A553ST06|A0A553ST06_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_04175PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	550.321514	1098.62847	0.65148	0.00035852	-2.8172	-0.0015503	-2.1657	-0.0011918	550.3199098772125	86.737	1.5866	85.305	84.553	86.139	-1.4311	0.13076	-0.0015473	NaN	49.536	70	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132140			33248	34445	27384	27409							0.08310567820262804
LNETVQQLN	9	Unmodified	_LNETVQQLN_					0	0	0			REV__ENSG00000198797|ENST00000361539|BRINP2	REV__ENSG00000198797|ENST00000361539|BRINP2	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.8092041015625	2	529.77747	1057.54039	-1.988	-0.0010532	-2.6887	-0.0014244	-4.6767	-0.0024776	530.2761924582962	61.615	0.20991	58.856	58.725	58.935	-2.7593					5	3	2	0	0	0	0.027462	1	4593	4593		26.693	13.734	1	4558.4	+		33249	23064	27385	27410	36617	36617					0.013919472296720414
LNETVQQLN	9	Unmodified	_LNETVQQLN_					0	0	0			REV__ENSG00000198797|ENST00000361539|BRINP2	REV__ENSG00000198797|ENST00000361539|BRINP2	MULTI-MATCH	OvCa99_classI_Rep5	1		2	529.77747	1057.54039	-0.37005	-0.00019605	-5.0277	-0.0026635	-5.3977	-0.0028596	530.2749106792721	58.806	0.50671	58.806	58.613	59.12	0	-0.024924	-0.0011238	NaN	34.173	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	283740	+		33250	23064	27385	27410							0.013919472296720414
LNEVGSHLL	9	Unmodified	_LNEVGSHLL_					0	0	0			REV__tr|A0A553SGA3|A0A553SGA3_NIACIDeaminaseOS=NialliacirculansOX=1397GN=CEQ21_10430PE=4SV=1	REV__tr|A0A553SGA3|A0A553SGA3_NIACIDeaminaseOS=NialliacirculansOX=1397GN=CEQ21_10430PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.8015441894531	2	491.271824	980.529095	-1.0643	-0.00052286	1.2339	0.00060617	0.16959	8.3313E-05	491.2723364402445	106.9	1.1374	105.02	104.7	105.83	-1.8785					56	21	3	0	0	0	0.027462	1	9832	9832		20.947	0	1	137970	+		33251	29676	27386	27411	36618	36618					0.03805169926192775
LNEWLQILK	9	Unmodified	_LNEWLQILK_					0	0	0		ENSG00000128789|ENST00000317615|PSMG2;nc|ENSG00000128789|Q969U7-2|PSMG2;ENST00000588824.1_1_18:12724471-12725527:+|nuORF	ENSG00000128789|ENST00000317615|PSMG2	ENSG00000128789|ENST00000317615|PSMG2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	579.3118896484375	2	578.839874	1155.66519	-1.6049	-0.000929	-4.1781	-0.0024184	-5.783	-0.0033475	578.8382238606587	100.63	0.5173	98.368	98.135	98.652	-2.2665					14	9	2	0	0	0	0.027418	1	9006	9006		71.877	4.3838	1	32474			33252	3902	27387	27412	36619	36619					0.09358864436853764
LNEYCKMPL	9	Unmodified	_LNEYCKMPL_					0	0	0		nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-3|RYR3	nc|ENSG00000198838|Q15413-2|RYR3	nc|ENSG00000198838|Q15413-2|RYR3	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.8497924804688	2	555.769745	1109.52494	0.053206	2.957E-05	1.8885	0.0010496	1.9417	0.0010792	555.7704830536098	30.309	1.1908	30.309	29.885	31.076	0					36	23	2	0	0	0	0.027462	1	1132	1132		35.618	0	1	41355			33253	8886	27388	27413	36620	36620					-0.02544378883385434
LNFCCLGFI	9	Unmodified	_LNFCCLGFI_					0	0	0		ENSG00000244242|ENST00000340134|IFITM10	ENSG00000244242|ENST00000340134|IFITM10	ENSG00000244242|ENST00000340134|IFITM10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.272705078125	2	515.248449	1028.48234	-0.17249	-8.8875E-05	-3.9032	-0.0020111	-4.0757	-0.0021	515.2466591290179	59.187	0.49656	55.795	55.604	56.1	-3.392					17	9	2	0	0	0	0.027462	1	3941	3941		35.201	6.9464	1	38543			33254	9394	27389	27414	36621	36621					-0.03075729220950052
LNFFNKKTI	9	Unmodified	_LNFFNKKTI_					0	0	0			REV__tr|A0A553STF5|A0A553STF5_NIACIHelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04905PE=3SV=1	REV__tr|A0A553STF5|A0A553STF5_NIACIHelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04905PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.7661743164062	2	562.826766	1123.63898	-0.1446	-8.1385E-05	2.4114	0.0013572	2.2668	0.0012758	563.3298056942411	42.373	0.42804	42.373	42.111	42.539	0					15	9	2	0	0	0	0.027461	1	2688	2688		40.778	0	1	76732	+		33255	30955	27390	27415	36622	36622					0.08210595265381926
LNFIITWID	9	Unmodified	_LNFIITWID_					0	0	0		tr|A0A7D6ZIX0|A0A7D6ZIX0_9CLOTHemerythrinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08890PE=3SV=1	tr|A0A7D6ZIX0|A0A7D6ZIX0_9CLOTHemerythrinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08890PE=3SV=1	tr|A0A7D6ZIX0|A0A7D6ZIX0_9CLOTHemerythrinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08890PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.3493041992188	2	567.813325	1133.6121	-0.85643	-0.0004863	-3.0861	-0.0017523	-3.9425	-0.0022386	567.8115578392678	90.779	1.4212	88.698	88.259	89.68	-2.0805					69	27	3	0	0	0	0.027462	1	5770	5770		21.96	0	1	526830			33256	35630	27391	27416	36623	36623					0.050634866541713563
LNFIQDQLK	9	Unmodified	_LNFIQDQLK_					0	0	0			REV__nc|ENSG00000148908|O43665-2|RGS10	REV__nc|ENSG00000148908|O43665-2|RGS10	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.3453369140625	2	559.813856	1117.61316	2.0334	0.0011383	2.9093	0.0016287	4.9427	0.002767	559.8162122380656	109.96	0.90201	109.96	109.64	110.54	0					48	19	4	0	0	0	0.027411	1	12517	12517		64.207	0	1	1445500	+		33257	20135	27392	27417	36624	36624					0.05905701023084475
LNFISATCLMV	11	Unmodified	_LNFISATCLMV_					0	0	0			REV__ENSG00000069696|ENST00000176183|DRD4	REV__ENSG00000069696|ENST00000176183|DRD4	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3161010742188	2	606.311777	1210.609	0.25387	0.00015392	2.9345	0.0017792	3.1883	0.0019331	606.3134601126474	98.83	1.4417	96.504	95.924	97.366	-2.3253					71	27	3	0	0	0	0.52842	1	8826	8826		51.193	1.6567	1	637760	+		33258	16869	27393	27418	36625	36625					0.012121522134975748
LNFISATCLMV	11	Unmodified	_LNFISATCLMV_					0	0	0			REV__ENSG00000069696|ENST00000176183|DRD4	REV__ENSG00000069696|ENST00000176183|DRD4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	606.311777	1210.609	-0.48343	-0.00029311	3.2839	0.0019911	2.8005	0.001698	606.3135490269577	97.45	1.2272	96.492	96.068	97.296	-0.95857	-0.023545	0.0010868	NaN	51.193	80	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	478450	+		33259	16869	27393	27418							0.012121522134975748
LNFKLITWKF	10	Unmodified	_LNFKLITWKF_					0	0	0			REV__tr|A0A7D7A1X5|A0A7D7A1X5_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_14205PE=4SV=1	REV__tr|A0A7D7A1X5|A0A7D7A1X5_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_14205PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	437.2559814453125	3	437.26042	1308.75943	-3.525	-0.0015413	-3.4237	-0.0014971	-6.9487	-0.0030384	437.25900137272055	155.13	2.0506	154.9	154.06	156.11	-0.22697					105	58	2	0	0	0	0.82892	1	15854	15854		15.333	0.63944	1	24211	+		33260	32512	27394	27419	36626	36626					0.11740003258978504
LNFNQKVTL	9	Unmodified	_LNFNQKVTL_					0	0	0		tr|A0A7D6VYU4|A0A7D6VYU4_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17860PE=4SV=1	tr|A0A7D6VYU4|A0A7D6VYU4_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17860PE=4SV=1	tr|A0A7D6VYU4|A0A7D6VYU4_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17860PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	538.8082275390625	2	538.808574	1075.60259	-0.31744	-0.00017104	-0.045486	-2.4508E-05	-0.36293	-0.00019555	538.8083886212946	124.65	1.0862	124.42	124.17	125.26	-0.23193					45	21	3	0	0	0	0.38969	1	12137	12137		52.937	10.072	1	98530			33261	35339	27395	27420	36627	36627					0.06781718368665679
LNFNQKVTL	9	Unmodified	_LNFNQKVTL_					0	0	0		tr|A0A7D6VYU4|A0A7D6VYU4_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17860PE=4SV=1	tr|A0A7D6VYU4|A0A7D6VYU4_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17860PE=4SV=1	tr|A0A7D6VYU4|A0A7D6VYU4_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17860PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	538.8074951171875	2	538.808574	1075.60259	2.4054	0.0012961	-2.5752	-0.0013875	-0.16974	-9.1458E-05	538.8070018358005	125.66	1.5632	124.61	124.05	125.62	-1.0519					53	29	3	0	0	0	0.28934	2	9794	9794;9799		64.207	5.1589	1	105020			33262	35339	27395	27420	36628;36629	36628					0.06781718368665679
LNFNQKVTL	9	Unmodified	_LNFNQKVTL_					0	0	0		tr|A0A7D6VYU4|A0A7D6VYU4_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17860PE=4SV=1	tr|A0A7D6VYU4|A0A7D6VYU4_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17860PE=4SV=1	tr|A0A7D6VYU4|A0A7D6VYU4_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17860PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.8087158203125	2	538.808574	1075.60259	-3.0626	-0.0016501	2.8932	0.0015589	-0.16935	-9.1248E-05	538.8099114853534	126.02	1.2245	124.61	124.29	125.51	-1.4143					54	24	3	0	0	0	0.13504	1	11990	11990		87.696	10.922	1	107630			33263	35339	27395	27420	36630	36630					0.06781718368665679
LNFWAKRAKQ	10	Unmodified	_LNFWAKRAKQ_					0	0	0		MED1-CLPB|1|fusion;nc|ENSG00000162129|Q9H078-5|CLPB;nc|ENSG00000162129|Q9H078-3|CLPB;nc|ENSG00000162129|Q9H078-4|CLPB;ENSG00000162129|ENST00000538039|CLPB;nc|ENSG00000162129|Q9H078|CLPB;ENST00000538021.5_2_11:72004413-72018253:-|nuORF	MED1-CLPB|1|fusion	MED1-CLPB|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	631.3629760742188	2	631.361839	1260.70913	0.51322	0.00032403	-0.68258	-0.00043095	-0.16935	-0.00010692	631.3614756771998	109.66	1.2643	107.98	107.67	108.93	-1.6846					61	23	3	0	0	0	0.67931	1	10086	10086		32.812	3.6424	1	244860			33264	6159	27396	27421	36631	36631					0.08919893653842337
LNFYASSL	8	Unmodified	_LNFYASSL_					0	0	0		ENSG00000151151|ENST00000373935|IPMK;ENST00000425988.1_1_13:23411483-23411888:-|nuORF	ENSG00000151151|ENST00000373935|IPMK	ENSG00000151151|ENST00000373935|IPMK	MULTI-MSMS	OvCa99_classI_Rep5	1	457.731689453125	2	457.734543	913.454533	0.063683	2.915E-05	-4.1781	-0.0019125	-4.1145	-0.0018833	457.7325170355408	46.872	0.8769	46.872	46.545	47.422	0					48	19	4	0	0	0	0.56195	1	3330	3330		71.296	7.0884	1	2103600			33265	5538	27397	27422	36632	36632					-0.005655928851979297
LNGCVNCLII	10	Unmodified	_LNGCVNCLII_					0	0	0			REV__nc|ENSG00000005810|O75592-2|MYCBP2	REV__nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.291748046875	2	531.277738	1060.54092	2.9766	0.0015814	0.74672	0.00039672	3.7233	0.0019781	531.27770649685	87.891	0.632	87.891	87.794	88.426	0					26	14	4	0	0	0	0.026752	1	9340	9340		35.618	0	1	1478400	+		33266	16403	27398	27423	36633	36633					0.01307327353515575
LNGFGIVI	8	Unmodified	_LNGFGIVI_					0	0	0		tr|A0A553SMS3|A0A553SMS3_NIACIXanthinedehydrogenasesubunitDOS=NialliacirculansOX=1397GN=pucDPE=4SV=1	tr|A0A553SMS3|A0A553SMS3_NIACIXanthinedehydrogenasesubunitDOS=NialliacirculansOX=1397GN=pucDPE=4SV=1	tr|A0A553SMS3|A0A553SMS3_NIACIXanthinedehydrogenasesubunitDOS=NialliacirculansOX=1397GN=pucDPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	417.7178955078125	2	416.749996	831.485439	-0.057163	-2.3823E-05	0.38784	0.00016163	0.33068	0.00013781	416.7498553572516	68.212	0.36141	68.212	68.037	68.398	0					10	8	2	0	0	0	0.028476	1	6454	6454		54.765	27.969	1	117820			33267	33868	27399	27424	36634	36634					0.06295605219713707
LNGFYCPKS	9	Unmodified	_LNGFYCPKS_					0	0	0			REV__CACHD1|p.D435Rfs*9|1|0.08|ENSG00000158966|chr1:64652225-64652226|-/A|frameshift_variant	REV__CACHD1|p.D435Rfs*9|1|0.08|ENSG00000158966|chr1:64652225-64652226|-/A|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.8037719726562	2	514.747127	1027.4797	-1.2836	-0.00066074	-1.1708	-0.00060268	-2.4545	-0.0012634	514.7462864822811	95.308	1.1059	92.84	92.46	93.566	-2.4685					36	21	2	0	0	0	0.027462	1	8404	8404		15.642	0	1	31261	+		33268	15725	27400	27425	36635	36635					-0.032938613542683015
LNGLMMALF	9	Oxidation (M)	_LNGLM(Oxidation (M))MALF_		LNGLM(0.979)M(0.021)ALF		LNGLM(17)M(-17)ALF	0	0	1		ENSG00000173852|ENST00000638088|DPY19L1;nc|ENSG00000173852|Q2PZI1|DPY19L1;ENST00000417811.2_3_7:32660640-32715635:-|nuORF	ENSG00000173852|ENST00000638088|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	MULTI-MSMS	OvCa99_classI_Rep5	1	513.2637329101562	2	513.261556	1024.50856	1.9389	0.00099519	-1.8282	-0.00093834	0.11076	5.6851E-05	513.2617250083524	78.563	0.82575	78.563	78.335	79.16	0					32	19	2	0	0	0	0.36502	1	7967	7967		55.504	14.932	2	1138100			33269	7422	27401	27426	36636	36636		224			-0.0027146004947553593
LNGLMMALF	9	Oxidation (M)	_LNGLM(Oxidation (M))MALF_					0	0	1		ENSG00000173852|ENST00000638088|DPY19L1;nc|ENSG00000173852|Q2PZI1|DPY19L1;ENST00000417811.2_3_7:32660640-32715635:-|nuORF	ENSG00000173852|ENST00000638088|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	513.261556	1024.50856	0.062611	3.2136E-05	-6.6534	-0.0034149	-6.5908	-0.0033828	513.2581393785641	80.751	0.56834	78.429	78.286	78.854	-2.3226	-0.066945	-0.0014787	NaN	55.504	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14623			33270	7422	27401	27426				224			-0.0027146004947553593
LNGNQAKEAEI	11	Unmodified	_LNGNQAKEAEI_					0	0	0		ENSG00000198934|ENST00000361470|MAGEE1	ENSG00000198934|ENST00000361470|MAGEE1	ENSG00000198934|ENST00000361470|MAGEE1	MULTI-MSMS	OvCa9_classI_Rep3	3	593.8071899414062	2	593.806759	1185.59897	-0.96533	-0.00057322	-0.046235	-2.7454E-05	-1.0116	-0.00060067	593.8068862261109	84.543	1.3672	82.283	81.927	83.295	-2.261					95	27	5	0	0	0	0.055405	1	4922	4922		112.41	0.30369	1	607860			33271	8911	27402	27427	36637	36637					0.013590038041456864
LNGNQAKEAEI	11	Unmodified	_LNGNQAKEAEI_					0	0	0		ENSG00000198934|ENST00000361470|MAGEE1	ENSG00000198934|ENST00000361470|MAGEE1	ENSG00000198934|ENST00000361470|MAGEE1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	593.806759	1185.59897	-1.062	-0.00063065	0.21203	0.0001259	-0.85002	-0.00050475	593.8070839594548	83.504	1.4058	81.905	81.594	83	-1.5989	-0.22838	0.0010332	NaN	112.41	103	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170910			33272	8911	27402	27427							0.013590038041456864
LNGPSVAVL	9	Unmodified	_LNGPSVAVL_					0	0	0			REV__tr|A0A553SUR2|A0A553SUR2_NIACILysinetransporterLysEOS=NialliacirculansOX=1397GN=CEQ21_06040PE=4SV=1	REV__tr|A0A553SUR2|A0A553SUR2_NIACILysinetransporterLysEOS=NialliacirculansOX=1397GN=CEQ21_06040PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	435.7196350097656	2	435.258185	868.501818	0.93705	0.00040786	0.35182	0.00015313	1.2889	0.00056099	435.2576584826956	57.979	0.4191	57.979	57.775	58.194	0					17	9	3	0	0	0	0.027461	1	4876	4876		25.574	0.12388	1	151510	+		33273	31112	27403	27428	36638	36638					0.062306863857997996
LNGSAAGHVL	10	Unmodified	_LNGSAAGHVL_					0	0	0		ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	ENSG00000183508|ENST00000369448|TENT5C	MULTI-MSMS	OvCa99_classI_Rep5	1	469.758056640625	2	469.756341	937.498129	-0.25415	-0.00011939	0.73331	0.00034447	0.47915	0.00022508	469.75632826583853	54.123	1.241	54.123	53.564	54.805	0					58	29	4	0	0	0	0.6349	1	4368	4368		37.812	2.1932	1	3869200			33274	8080	27404	27429	36639	36639					0.026880166119553905
LNGVKLVV	8	Unmodified	_LNGVKLVV_					0	0	0		ENSG00000140511|ENST00000359595|HAPLN3;ENST00000563808.1_1_15:89424564-89438702:-|nuORF	ENSG00000140511|ENST00000359595|HAPLN3	ENSG00000140511|ENST00000359595|HAPLN3	MULTI-SECPEP	OvCa99_classI_Rep5	1	421.9194030761719	2	421.278921	840.543289	-0.3078	-0.00012967	0.25957	0.00010935	-0.048232	-2.0319E-05	421.27893627905166	37.953	0.3544	37.953	37.714	38.069	0					11	7	2	0	0	0	0.028476	1	2114	2114		19.36	9.0947	1	90857			33275	4851	27405	27430	36640	36640					0.11663867145136919
LNGYCKKP	8	Unmodified	_LNGYCKKP_					0	0	0		ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	ENSG00000163811|ENST00000407426|WDR43	MULTI-MSMS	OvCa9_classI_Rep3	3	461.74530029296875	2	461.744388	921.474223	-0.83419	-0.00038518	1.8288	0.00084442	0.99457	0.00045924	461.74511648930593	116.8	1.6831	115.76	115.49	117.17	-1.0414					73	33	4	0	0	0	0.66704	1	8746	8746		50.025	9.2464	1	334790			33276	6362	27406	27431	36641	36641					0.010344598539177241
LNHGGPASFI	10	Unmodified	_LNHGGPASFI_					0	0	0			REV__GBP4|p.V443A|1|0.47|ENSG00000162654|chr1:89188664-89188664|A/G|missense_variant	REV__GBP4|p.V443A|1|0.47|ENSG00000162654|chr1:89188664-89188664|A/G|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	506.7662353515625	2	506.764166	1011.51378	0.47519	0.00024081	1.8236	0.00092412	2.2988	0.0011649	507.2662919825803	161.59	0.50781	161.59	161.36	161.87	0					19	9	3	0	0	0	0.66721	1	18944	18944		34.173	0.65696	1	73607	+		33277	28151	27407	27432	36642	36642					0.008483031289870269
LNHILENEL	9	Unmodified	_LNHILENEL_					0	0	0			REV__tr|A0A7D7A4P6|A0A7D7A4P6_9CLOTTetR/AcrRfamilytranscriptionalregulatorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03985PE=4SV=1	REV__tr|A0A7D7A4P6|A0A7D7A4P6_9CLOTTetR/AcrRfamilytranscriptionalregulatorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03985PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.7962646484375	2	547.795663	1093.57677	-2.3765	-0.0013018	1.2696	0.00069549	-1.1068	-0.00060632	547.7963335506997	107.88	1.532	106	105.74	107.27	-1.8785					72	30	3	0	0	0	0.2784	1	9880	9880		65.465	3.7741	1	262780	+		33278	32613	27408	27433	36643	36643					0.03372824126381602
LNHNMATRSIL	11	Unmodified	_LNHNMATRSIL_					0	0	0		tr|A0A7D6ZU35|A0A7D6ZU35_9CLOTPeptidoglycan-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22590PE=4SV=1	tr|A0A7D6ZU35|A0A7D6ZU35_9CLOTPeptidoglycan-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22590PE=4SV=1	tr|A0A7D6ZU35|A0A7D6ZU35_9CLOTPeptidoglycan-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22590PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	635.791259765625	2	635.340246	1268.66594	0.60727	0.00038582	-0.84456	-0.00053658	-0.23729	-0.00015076	635.3400998435799	105.3	1.8933	105.3	104.91	106.81	0					57	42	2	0	0	0	0.025701	1	11867	11867		22.58	0	1	3579500			33279	35765	27409	27434	36644	36644					0.04235335814246355
LNHPLLFPR	9	Unmodified	_LNHPLLFPR_					0	0	0		ENST00000530973.1_1_11:65111264-65113280:+|nuORF	ENST00000530973.1_1_11:65111264-65113280:+|nuORF	ENST00000530973.1_1_11:65111264-65113280:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8318481445312	2	553.827101	1105.63965	1.4062	0.00077877	3.9255	0.0021741	5.3317	0.0029528	553.8291816775361	139.45	3.0735	137.95	136.76	139.84	-1.4952					150	61	3	0	0	0	0.7044	1	13555	13555		16.473	0	1	110800			33280	13299	27410	27435	36645	36645					0.09105434705088555
LNHQNLYF	8	Unmodified	_LNHQNLYF_					0	0	0			REV__MYO9B|p.P1393Qfs*60|1|0.26|ENSG00000099331|chr19:17198247-17198247|C/-|frameshift_variant	REV__MYO9B|p.P1393Qfs*60|1|0.26|ENSG00000099331|chr19:17198247-17198247|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	524.7671508789062	2	524.764166	1047.51378	1.2156	0.00063789	1.8477	0.0009696	3.0633	0.0016075	524.7650401246628	128.53	2.025	128.31	127.54	129.56	-0.22697					74	40	3	0	0	0	0.69415	1	12631	12631		44.531	2.0566	1	156760	+		33281	28693	27411	27436	36646	36646					-0.008076968710156507
LNHSELAIL	9	Unmodified	_LNHSELAIL_					0	0	0		ENSG00000065883|ENST00000181839|CDK13;ENST00000465643.1_1_7:40132349-40134576:+|nuORF	ENSG00000065883|ENST00000181839|CDK13	ENSG00000065883|ENST00000181839|CDK13	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.3236999511719	2	505.287474	1008.5604	-0.90143	-0.00045548	3.7749	0.0019074	2.8735	0.0014519	505.29036345822664	104.86	0.34254	104.29	104.17	104.51	-0.57639					11	6	2	0	0	0	0.027461	1	9723	9723		40.778	0	1	8262			33282	1339	27412	27437	36647	36647					0.056457429602687625
LNIAMFIVVM	10	Unmodified	_LNIAMFIVVM_					0	0	0		nc|ENSG00000112414|Q86SQ4-2|ADGRG6;nc|ENSG00000112414|Q86SQ4|ADGRG6;nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENSG00000112414|ENST00000367609|ADGRG6;ENST00000472054.2_1_6:142738255-142764649:+|nuORF	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.8514404296875	2	575.821781	1149.62901	-1.0785	-0.00062105	-2.5456	-0.0014658	-3.6241	-0.0020869	575.8201012808662	88.762	0.77637	86.631	86.51	87.287	-2.1309					29	15	2	0	0	0	0.026752	1	5464	5464		27.882	10.414	1	90922			33283	2904	27413	27438	36648	36648					0.06017947944133084
LNIEEKSLN	9	Unmodified	_LNIEEKSLN_					0	0	0			REV__nc|ENSG00000147316|Q8NEM0-3|MCPH1	REV__nc|ENSG00000147316|Q8NEM0-3|MCPH1	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.30712890625	2	530.287671	1058.56079	-0.51389	-0.00027251	-1.1647	-0.00061761	-1.6786	-0.00089012	530.2865339385418	53.791	0.35744	53.791	53.651	54.008	0					11	8	2	0	0	0	0.027462	1	4306	4306		37.812	0	1	1491300	+		33284	20057	27414	27439	36649	36649					0.03385117889479261
LNIEEPKPV	9	Unmodified	_LNIEEPKPV_					0	0	0			REV__ENSG00000049656|ENST00000320895|CLPTM1L	REV__ENSG00000049656|ENST00000320895|CLPTM1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.7656860351562	2	519.795132	1037.57571	0.56382	0.00029307	-4.4774	-0.0023273	-3.9136	-0.0020343	519.7927400214955	154.52	0.7077	154.52	154.22	154.93	0					37	13	4	0	0	0	0.027457	1	18071	18071		10.104	0	1	89786	+		33285	16678	27415	27440	36650	36650					0.05842609757473838
LNIFWLLVGF	10	Unmodified	_LNIFWLLVGF_					0	0	0		ENST00000397195.9_1_17:2497244-2541483:+|nuORF;ENST00000575477.5_1_17:2497248-2541480:+|nuORF	ENST00000397195.9_1_17:2497244-2541483:+|nuORF	ENST00000397195.9_1_17:2497244-2541483:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	612.327392578125	2	611.35516	1220.69577	1.0199	0.00062353	0.72754	0.00044478	1.7475	0.0010683	611.3554112792831	151.65	0.59395	151.65	151.15	151.74	0					15	11	2	0	0	0	0.026982	1	17719	17719		16.473	0	1	28530			33286	11340	27416	27441	36651	36651					0.09424642821886664
LNIGGRNL	8	Unmodified	_LNIGGRNL_					0	0	0		tr|A0A7D6ZRQ2|A0A7D6ZRQ2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13105PE=4SV=1	tr|A0A7D6ZRQ2|A0A7D6ZRQ2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13105PE=4SV=1	tr|A0A7D6ZRQ2|A0A7D6ZRQ2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13105PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	428.7071838378906	2	428.753601	855.49265	-0.27353	-0.00011728	-0.95168	-0.00040803	-1.2252	-0.00052531	428.7531971357158	59.928	0.42965	59.928	59.686	60.116	0					18	10	2	0	0	0	0.028476	1	5179	5179		21.96	10.449	1	410280			33287	35719	27417	27442	36652	36652					0.05912337820132052
LNIHIRVH	8	Unmodified	_LNIHIRVH_					0	0	0		ENSG00000188321|ENST00000603380|ZNF559	ENSG00000188321|ENST00000603380|ZNF559	ENSG00000188321|ENST00000603380|ZNF559	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.2436218261719	2	501.303793	1000.59303	2.1393	0.0010724	2.2614	0.0011336	4.4006	0.0022061	501.3050127623421	137.27	0.38576	137.27	137.16	137.54	0					9	7	2	0	0	0	0.028476	1	16002	16002		60.294	23.847	1	18831			33288	8465	27418	27443	36653	36653					0.09275994873803484
LNIIGWEVSSQ	11	Unmodified	_LNIIGWEVSSQ_					0	0	0			REV__ENST00000533208.5_1_11:44089259-44098922:+|nuORF	REV__ENST00000533208.5_1_11:44089259-44098922:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.7583923339844	3	415.88731	1244.6401	-0.29871	-0.00012423	-3.2166	-0.0013377	-3.5153	-0.001462	415.88596955768884	27.909	0.79793	27.909	27.691	28.489	0					42	15	5	0	0	0	0.025772	1	913	913		21.032	15.333	1	880520	+		33289	27254	27419	27444	36654	36654					0.02756764843638848
LNIIKPQL	8	Unmodified	_LNIIKPQL_					0	0	0		nc|ENSG00000107036|Q4ADV7-3|RIC1;ENSG00000107036|ENST00000414202|RIC1	nc|ENSG00000107036|Q4ADV7-3|RIC1	nc|ENSG00000107036|Q4ADV7-3|RIC1	MULTI-MSMS	OvCa9_classI_Rep3	3	469.80596923828125	2	469.805303	937.596052	-0.20809	-9.776E-05	0.20342	9.5568E-05	-0.0046666	-2.1924E-06	469.8053033638793	89.853	1.7351	87.772	87.49	89.225	-2.0805					74	33	3	0	0	0	0.33245	1	5561	5561		101.21	15.852	1	694800			33290	2583	27420	27445	36655	36655					0.12475825207945945
LNIILDALV	9	Unmodified	_LNIILDALV_					0	0	0		tr|A0A553SNE6|A0A553SNE6_NIACIMultidrugexportproteinMepAOS=NialliacirculansOX=1397GN=CEQ21_24230PE=3SV=1	tr|A0A553SNE6|A0A553SNE6_NIACIMultidrugexportproteinMepAOS=NialliacirculansOX=1397GN=CEQ21_24230PE=3SV=1	tr|A0A553SNE6|A0A553SNE6_NIACIMultidrugexportproteinMepAOS=NialliacirculansOX=1397GN=CEQ21_24230PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.28961181640625	2	492.310418	982.606283	0.58444	0.00028772	-1.1252	-0.00055393	-0.54072	-0.0002662	492.3097328370927	112.83	1.7263	111.38	110.8	112.53	-1.4461					76	34	4	0	0	0	0.027456	1	10469	10469		38.806	0	1	335940			33291	33919	27421	27446	36656	36656					0.11428388142496715
LNILEDSAE	9	Unmodified	_LNILEDSAE_					0	0	0		ENSG00000146005|ENST00000274710|PSD2	ENSG00000146005|ENST00000274710|PSD2	ENSG00000146005|ENST00000274710|PSD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.2294921875	2	502.250754	1002.48696	-0.56806	-0.00028531	-0.78017	-0.00039184	-1.3482	-0.00067715	502.24977681083067	38.278	0.63667	38.278	38.069	38.705	0					15	13	2	0	0	0	0.027462	1	2153	2153		35.618	13.658	1	38339			33292	5259	27422	27447	36657	36657					-0.014188502728529784
LNILHLDQV	9	Unmodified	_LNILHLDQV_					0	0	0			REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|61|2|sense	REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|61|2|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	532.8101196289062	2	532.808574	1063.60259	0.34365	0.0001831	-0.89083	-0.00047464	-0.54718	-0.00029154	532.8081025402515	71.91	1.9268	71.91	71.349	73.276	0					117	47	3	0	0	0	0.022645	1	6958	6958		143.89	2.3663	1	27992000	+		33293	28262	27423	27448	36658	36658					0.07333718368636255
LNILHLDQV	9	Unmodified	_LNILHLDQV_					0	0	0			REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|61|2|sense	REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|61|2|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	532.8090209960938	2	532.808574	1063.60259	-1.6207	-0.00086354	0.88738	0.0004728	-0.73335	-0.00039073	532.809075214856	76.341	2.1952	74.487	74.096	76.292	-1.854					137	40	4	0	0	0	0.041116	3	6352	6352;6359;6366		125.81	32.619	1	3797500	+		33294	28262	27423	27448	36659;36660;36661	36659					0.07333718368636255
LNILHLDQV	9	Unmodified	_LNILHLDQV_					0	0	0			REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|61|2|sense	REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|61|2|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	532.8084106445312	2	532.808574	1063.60259	-0.3837	-0.00020444	-0.36608	-0.00019505	-0.74977	-0.00039948	532.8083640293886	77.17	3.7419	74.798	74.138	77.88	-2.3715					207	73	5	0	0	0	0.013607	3	3989	3989;4037;4061		157.33	13.864	1	3803100	+		33295	28262	27423	27448	36662;36663;36664	36662					0.07333718368636255
LNILHLDQV	9	Unmodified	_LNILHLDQV_					0	0	0			REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|61|2|sense	REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|61|2|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.8095092773438	2	532.808574	1063.60259	-1.1516	-0.00061358	0.62725	0.0003342	-0.52435	-0.00027938	532.8089107055455	77.667	2.0564	74.851	74.488	76.544	-2.8165					142	42	4	0	0	0	0.030815	2	6272	6211;6272		134.81	22.4	1	4693600	+		33296	28262	27423	27448	36665;36666	36666					0.07333718368636255
LNINVVAIL	9	Unmodified	_LNINVVAIL_					0	0	0		tr|A0A7D7A3M9|A0A7D7A3M9_9CLOTHomoserinedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00425PE=3SV=1	tr|A0A7D7A3M9|A0A7D7A3M9_9CLOTHomoserinedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00425PE=3SV=1	tr|A0A7D7A3M9|A0A7D7A3M9_9CLOTHomoserinedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00425PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	484.79864501953125	2	484.810585	967.606617	-0.81369	-0.00039448	4.1979	0.0020352	3.3842	0.0016407	484.81333827846765	97.816	0.29807	96.056	95.913	96.211	-1.7595					7	5	2	0	0	0	0.027326	1	6492	6492		76.847	13.54	1	6570.1			33297	36121	27424	27449	36667	36667					0.12151807862369424
LNISLGDVV	9	Unmodified	_LNISLGDVV_					0	0	0		nc|ENSG00000100031|P19440-2|GGT1;ENSG00000100031|ENST00000400382|GGT1	nc|ENSG00000100031|P19440-2|GGT1	nc|ENSG00000100031|P19440-2|GGT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.7590637207031	2	465.26875	928.522947	-0.29151	-0.00013563	0.81013	0.00037693	0.51862	0.0002413	465.26889990712317	54.11	0.20551	54.11	54.008	54.214	0					7	4	2	0	0	0	0.027402	1	4343	4343		66.429	5.4573	1	309300			33298	1998	27425	27450	36668	36668					0.05582651694658125
LNISTKVAL	9	Unmodified	_LNISTKVAL_					0	0	0		nc|ENSG00000136243|O15504-2|NUP42;ENSG00000136243|ENST00000258742|NUP42	nc|ENSG00000136243|O15504-2|NUP42	nc|ENSG00000136243|O15504-2|NUP42	MULTI-SECPEP	OvCa9_classI_Rep3	3	479.7832336425781	2	479.800217	957.585882	-0.7242	-0.00034747	-0.1232	-5.9111E-05	-0.8474	-0.00040658	479.79992828137426	84.49	1.1094	82.229	81.836	82.945	-2.261					47	22	3	0	0	0	0.027447	1	4963	4963		66.429	8.9766	1	60199			33299	4475	27426	27451	36669	36669					0.1053921748269886
LNISTKVAL	9	Unmodified	_LNISTKVAL_					0	0	0		nc|ENSG00000136243|O15504-2|NUP42;ENSG00000136243|ENST00000258742|NUP42	nc|ENSG00000136243|O15504-2|NUP42	nc|ENSG00000136243|O15504-2|NUP42	MULTI-MATCH	OvCa9_classI_Rep2	2		2	479.800217	957.585882	-0.76331	-0.00036623	0.5645	0.00027085	-0.1988	-9.5386E-05	479.80033523238075	83.611	0.96173	82.013	81.731	82.693	-1.5989	-0.12155	0.00103	NaN	47.657	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36023			33300	4475	27426	27451							0.1053921748269886
LNISTKVAL	9	Unmodified	_LNISTKVAL_					0	0	0		nc|ENSG00000136243|O15504-2|NUP42;ENSG00000136243|ENST00000258742|NUP42	nc|ENSG00000136243|O15504-2|NUP42	nc|ENSG00000136243|O15504-2|NUP42	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	479.800217	957.585882	1.1767	0.00056459	-1.3485	-0.00064699	-0.17174	-8.24E-05	479.7993579891974	84.807	0.77177	82.161	81.838	82.61	-2.6463	0.027065	-0.00080566	NaN	47.657	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54256			33301	4475	27426	27451							0.1053921748269886
LNITAAAWMK	10	Unmodified	_LNITAAAWMK_					0	0	0		chr6:34539562-34544020|91|15.22|0.56|4.77|-|2|SPDEF,SPDEF|1	chr6:34539562-34544020|91|15.22|0.56|4.77|-|2|SPDEF,SPDEF|1	chr6:34539562-34544020|91|15.22|0.56|4.77|-|2|SPDEF,SPDEF|1	MULTI-MSMS	OvCa99_classI_Rep5	1	559.8041381835938	2	559.804977	1117.5954	0.060741	3.4003E-05	-3.9558	-0.0022145	-3.8951	-0.0021805	559.8027489395263	67.788	2.0244	67.788	67.489	69.513	0					131	49	6	0	0	0	0.42082	1	6346	6346		65.465	4.4934	1	32943000			33302	517	27427	27452	36670	36670					0.04130662496572768
LNITVAQGAVD	11	Unmodified	_LNITVAQGAVD_					0	0	0			REV__ENSG00000173517|ENST00000682557|PEAK1;REV__PEAK1|p.N564Tfs*75|1|0.06|ENSG00000173517|chr15:77180241-77180241|C/-|frameshift_variant	REV__PEAK1|p.N564Tfs*75|1|0.06|ENSG00000173517|chr15:77180241-77180241|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.8126831054688	2	550.800946	1099.58734	-0.047377	-2.6096E-05	2.688	0.0014806	2.6407	0.0014545	551.3048588597389	62.691	0.23607	62.691	62.541	62.777	0					7	5	2	0	0	0	0.025265	1	5585	5585		42.864	16.171	1	160540	+		33303	21780;29286	27428	27453	36671	36671					0.04152806780825813
LNKAEKSID	9	Unmodified	_LNKAEKSID_					0	0	0			REV__ENSG00000067900|ENST00000399799|ROCK1	REV__ENSG00000067900|ENST00000399799|ROCK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.291748046875	2	509.282389	1016.55022	-0.36581	-0.0001863	1.8361	0.00093511	1.4703	0.00074881	509.28335202092376	38.933	0.66549	38.933	38.576	39.242	0					32	14	3	0	0	0	0.027462	1	2256	2256		42.396	1.618	1	325930	+		33304	16843	27429	27454	36672	36672					0.04261135235049096
LNKAIHMKKSL	11	Unmodified	_LNKAIHMKKSL_					0	0	0		nc|ENSG00000175054|Q13535-2|ATR;nc|ENSG00000175054|Q13535-3|ATR;ENSG00000175054|ENST00000350721|ATR	nc|ENSG00000175054|Q13535-2|ATR	nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8825073242188	2	641.886832	1281.75911	-5.3554	-0.0034376	-1.2716	-0.00081624	-6.627	-0.0042538	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.69808	1	13156	13156		30.318	5.7985	1	804890			33305	7509	27430	27455	36673	36673					0.12950260267484737
LNKAKDEMK	9	Unmodified	_LNKAKDEMK_					0	0	0		ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	MSMS	OvCa9_classI_Rep4_	4	538.7879638671875	2	538.792066	1075.56958	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.105	1	54.76	54.26	55.26	-3.3449								0	0	0	0.13464	1	3808	3808		66.429	7.6473	1				33306	4424	27431	27456	36674	36674					0.03481768254300732
LNKEHEDL	8	Unmodified	_LNKEHEDL_					0	0	0			REV__ENSG00000101596|ENST00000320876|SMCHD1	REV__ENSG00000101596|ENST00000320876|SMCHD1	MULTI-MSMS	OvCa99_classI_Rep5	1	499.2527160644531	2	499.251089	996.487624	2.8376	0.0014167	-0.89692	-0.00044779	1.9407	0.00096891	499.2505825425233	89.96	0.93581	89.96	89.641	90.577	0					55	22	4	0	0	0	0.35163	1	9641	9641		97.473	1.2823	1	7411100	+		33307	17507	27432	27457	36675	36675					-0.01076010833151031
LNKEKKIFQI	10	Unmodified	_LNKEKKIFQI_					0	0	0		ENST00000512020.5_1_4:185339662-185350218:-|nuORF;nc|ENSG00000168310|P14316-2|IRF2;ENSG00000168310|ENST00000393593|IRF2	ENST00000512020.5_1_4:185339662-185350218:-|nuORF	ENST00000512020.5_1_4:185339662-185350218:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	420.9273986816406	3	420.927329	1259.76016	1.2533	0.00052756	-1.2851	-0.00054095	-0.031812	-1.3391E-05	420.9267661520996	69.682	2.4064	66.928	66.572	68.979	-2.754					153	47	6	0	0	0	0.58667	1	3126	3126		43.651	1.4082	1	1507300			33308	6892	27433	27458	36676	36676					0.1406679790804901
LNKEVASNSEL	11	Unmodified	_LNKEVASNSEL_					0	0	0		ENSG00000186832|ENST00000301653|KRT16;CON__P08779	ENSG00000186832|ENST00000301653|KRT16	ENSG00000186832|ENST00000301653|KRT16	MULTI-MSMS	OvCa99_classI_Rep5	1	602.3270874023438	2	602.314417	1202.61428	1.9837	0.0011948	0.90184	0.00054319	2.8855	0.001738	602.3149374367363	83.779	1.6378	83.779	83.078	84.716	0					103	38	5	0	0	0	0.060105	1	8736	8736		109.48	8.0185	1	7443900		+	33309	626	27434	27459	36677	36677					0.02107870601344075
LNKEVASNSEL	11	Unmodified	_LNKEVASNSEL_					0	0	0		ENSG00000186832|ENST00000301653|KRT16;CON__P08779	ENSG00000186832|ENST00000301653|KRT16	ENSG00000186832|ENST00000301653|KRT16	MULTI-MATCH	OvCa9_classI_Rep2	2		2	602.314417	1202.61428	-2.0291	-0.0012221	1.3314	0.00080193	-0.69764	-0.0004202	602.3149389286341	85.418	1.5387	83.927	82.954	84.493	-1.4906	0.038103	0.0018997	NaN	109.48	60	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43262		+	33310	626	27434	27459							0.02107870601344075
LNKEVASNSEL	11	Unmodified	_LNKEVASNSEL_					0	0	0		ENSG00000186832|ENST00000301653|KRT16;CON__P08779	ENSG00000186832|ENST00000301653|KRT16	ENSG00000186832|ENST00000301653|KRT16	MULTI-MATCH	OvCa9_classI_Rep3	3		2	602.314417	1202.61428	0.83542	0.00050319	-1.4107	-0.0008497	-0.5753	-0.00034651	602.3134569069424	86.158	1.1047	83.937	83.636	84.74	-2.2204	0.048244	-0.0014035	NaN	109.48	39	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111860		+	33311	626	27434	27459							0.02107870601344075
LNKEVASNSEL	11	Unmodified	_LNKEVASNSEL_					0	0	0		ENSG00000186832|ENST00000301653|KRT16;CON__P08779	ENSG00000186832|ENST00000301653|KRT16	ENSG00000186832|ENST00000301653|KRT16	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	602.314417	1202.61428	1.6976	0.0010225	-4.2885	-0.0025831	-2.5909	-0.0015605	602.3117339813551	86.54	0.98642	83.913	83.613	84.599	-2.6269	0.023985	-0.0048702	NaN	109.48	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97481		+	33312	626	27434	27459							0.02107870601344075
LNKEWLDKEI	10	Unmodified	_LNKEWLDKEI_					0	0	0		tr|A0A553STY4|A0A553STY4_NIACIGlucuronylhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05880PE=3SV=1	tr|A0A553STY4|A0A553STY4_NIACIGlucuronylhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05880PE=3SV=1	tr|A0A553STY4|A0A553STY4_NIACIGlucuronylhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05880PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	644.3507690429688	2	644.350803	1286.68705	-4.6999	-0.0030284	2.9201	0.0018816	-1.7798	-0.0011468	644.3525813109911	156.61	0.94965	155.07	154.76	155.71	-1.545					72	28	3	0	0	0	0.74374	1	15473	15473		25.574	1.0549	1	115240			33313	34550	27435	27460	36678	36678					0.05517624394747145
LNKGQFNVD	9	Unmodified	_LNKGQFNVD_					0	0	0			REV__ENSG00000196576|ENST00000359337|PLXNB2	REV__ENSG00000196576|ENST00000359337|PLXNB2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.2434692382812	2	517.766906	1033.51926	-0.57213	-0.00029623	0.88739	0.00045946	0.31526	0.00016323	517.767230663112	52.016	1.5135	48.843	47.972	49.486	-3.1734					60	29	3	0	0	0	0.027462	1	3137	3137		21.96	7.095	1	101860	+		33314	22843	27436	27461	36679	36679					0.0038398192079966975
LNKHAPIL	8	Unmodified	_LNKHAPIL_					0	0	0			REV__ENSG00000121892|ENST00000303538|PDS5A	REV__ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	OvCa9_classI_Rep4_	4	453.28314208984375	2	453.281995	904.549437	-0.15158	-6.8709E-05	0.057288	2.5967E-05	-0.094294	-4.2742E-05	453.2818322513689	80.841	1.5079	78.13	77.81	79.318	-2.7106					68	30	4	0	0	0	0.71369	1	6634	6634		40.573	3.4135	1	599040	+		33315	18563	27437	27462	36680	36680					0.09334385376666887
LNKINNFSL	9	Unmodified	_LNKINNFSL_					0	0	0		ENSG00000124279|ENST00000264669|FASTKD3;FASTKD3|p.D348Vfs*9|1|0.08|ENSG00000124279|chr5:7867041-7867042|-/AA|frameshift_variant	ENSG00000124279|ENST00000264669|FASTKD3	ENSG00000124279|ENST00000264669|FASTKD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.2814331054688	2	531.800749	1061.58694	1.5753	0.00083776	-2.5929	-0.0013789	-1.0175	-0.00054112	531.799293990859	133.28	0.68535	133.28	133.04	133.72	0					21	14	2	0	0	0	0.027448	1	15509	15509		27.882	0	1	112820			33316	3644	27438	27463	36681	36681					0.05861431851622001
LNKIYIPVG	9	Unmodified	_LNKIYIPVG_					0	0	0			REV__nc|ENSG00000174740|Q96DU9-2|PABPC5	REV__nc|ENSG00000174740|Q96DU9-2|PABPC5	MULTI-SECPEP	OvCa9_classI_Rep2	2	509.8030090332031	2	508.810585	1015.60662	-0.34568	-0.00017588	0.82748	0.00042103	0.4818	0.00024515	508.81042662298734	135.33	0.88281	135.1	134.78	135.67	-0.22696					23	17	2	0	0	0	0.027462	1	13446	13446		31.955	7.7521	1	26191	+		33317	21850	27439	27464	36682	36682					0.09943807862384801
LNKKGIELEI	10	Unmodified	_LNKKGIELEI_					0	0	0		tr|A0A7D6VQ89|A0A7D6VQ89_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_01830PE=4SV=1	tr|A0A7D6VQ89|A0A7D6VQ89_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_01830PE=4SV=1	tr|A0A7D6VQ89|A0A7D6VQ89_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_01830PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	578.8497924804688	2	578.850438	1155.68632	-0.3344	-0.00019356	-1.7797	-0.0010302	-2.1141	-0.0012237	578.8492518840854	21.861	0.32413	21.861	21.723	22.047	0					26	11	3	0	0	0	0.79917	1	149	149		19.104	0	1	119320			33318	34829	27440	27465	36683	36683					0.11470829745690025
LNKKLEEIN	9	Unmodified	_LNKKLEEIN_					0	0	0			REV__nc|ENSG00000123360|Q01064-2|PDE1B	REV__nc|ENSG00000123360|Q01064-2|PDE1B	MULTI-SECPEP	OvCa9_classI_Rep3	3	549.829833984375	2	550.819138	1099.62372	-1.4666	-0.00080781	2.8265	0.0015569	1.36	0.00074909	550.8198659247412	83.35	0.85139	81.054	80.68	81.531	-2.2963					66	17	6	0	0	0	0.027447	1	4731	4731		56.721	14.325	1	163190	+		33319	18636	27441	27466	36684	36684					0.0778968367753805
LNKKNLVS	8	Unmodified	_LNKKNLVS_					0	0	0			REV__tr|A0A553SRZ3|A0A553SRZ3_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_01980PE=4SV=1	REV__tr|A0A553SRZ3|A0A553SRZ3_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_01980PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	458.2862548828125	2	458.284734	914.554916	2.3149	0.0010609	-0.20791	-9.5281E-05	2.107	0.0009656	458.2844694015383	76.303	0.92491	76.303	76.036	76.961	0					35	22	3	0	0	0	0.7224	1	7651	7651		38.806	3.1879	1	2323900	+		33320	30781	27442	27467	36685	36685					0.09422064168472843
LNKLLSRDS	9	Unmodified	_LNKLLSRDS_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-4|CNOT1	REV__nc|ENSG00000125107|A5YKK6-4|CNOT1	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3026733398438	2	523.303655	1044.59276	-0.69596	-0.0003642	0.54848	0.00028702	-0.14748	-7.7179E-05	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.60342	1	13775	13775		31.53	1.0262	1	130240	+		33321	18713	27443	27468	36686	36686					0.07224530363282611
LNKLYQVNI	9	Unmodified	_LNKLYQVNI_					0	0	0		tr|A0A7D6ZHG8|A0A7D6ZHG8_9CLOTGlycosidehydrolasefamily65proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02965PE=3SV=1	tr|A0A7D6ZHG8|A0A7D6ZHG8_9CLOTGlycosidehydrolasefamily65proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02965PE=3SV=1	tr|A0A7D6ZHG8|A0A7D6ZHG8_9CLOTGlycosidehydrolasefamily65proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02965PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	552.8268432617188	2	552.824224	1103.63389	1.1715	0.00064764	0.62026	0.00034289	1.7918	0.00099054	552.8245313028686	124.6	2.3182	124.6	124.19	126.51	0					105	52	5	0	0	0	0.29717	1	14367	14367		63.306	5.0763	1	6022200			33322	35578	27444	27469	36687	36687					0.08622291402775772
LNKLYQVNI	9	Unmodified	_LNKLYQVNI_					0	0	0		tr|A0A7D6ZHG8|A0A7D6ZHG8_9CLOTGlycosidehydrolasefamily65proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02965PE=3SV=1	tr|A0A7D6ZHG8|A0A7D6ZHG8_9CLOTGlycosidehydrolasefamily65proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02965PE=3SV=1	tr|A0A7D6ZHG8|A0A7D6ZHG8_9CLOTGlycosidehydrolasefamily65proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02965PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	552.8235473632812	2	552.824224	1103.63389	1.4579	0.00080598	-1.5531	-0.00085861	-0.095196	-5.2626E-05	552.8231418896985	126.07	1.3319	125.83	125.55	126.89	-0.2359					72	26	4	0	0	0	0.31747	1	12306	12306		60.972	0.85368	1	197830			33323	35578	27444	27469	36688	36688					0.08622291402775772
LNKLYQVNI	9	Unmodified	_LNKLYQVNI_					0	0	0		tr|A0A7D6ZHG8|A0A7D6ZHG8_9CLOTGlycosidehydrolasefamily65proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02965PE=3SV=1	tr|A0A7D6ZHG8|A0A7D6ZHG8_9CLOTGlycosidehydrolasefamily65proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02965PE=3SV=1	tr|A0A7D6ZHG8|A0A7D6ZHG8_9CLOTGlycosidehydrolasefamily65proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02965PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.82373046875	2	552.824224	1103.63389	-0.65284	-0.00036091	0.20079	0.000111	-0.45206	-0.00024991	552.8241738200417	127.6	1.5781	126.16	125.89	127.47	-1.4357					69	30	3	0	0	0	0.31747	1	12164	12164		60.972	7.6205	1	306030			33324	35578	27444	27469	36689	36689					0.08622291402775772
LNKMKHKF	8	Unmodified	_LNKMKHKF_					0	0	0			REV__ENST00000457262.1_1_10:43062145-43062928:+|nuORF	REV__ENST00000457262.1_1_10:43062145-43062928:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3036499023438	2	523.302404	1044.59026	-2.1228	-0.0011108	4.4262	0.0023162	2.3034	0.0012054	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.75241	1	11573	11573		25.45	1.2474	1	183010	+		33325	17371	27445	27470	36690	36690					0.06974403424624143
LNKMLHQIG	9	Unmodified	_LNKMLHQIG_					0	0	0			REV__ENST00000442441.5_1_21:34841172-34852188:-|nuORF	REV__ENST00000442441.5_1_21:34841172-34852188:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	527.354248046875	2	527.297319	1052.58008	-1.1701	-0.00061697	-3.5265	-0.0018595	-4.6965	-0.0024765	527.2954649251029	84.019	0.97831	82.473	82.023	83.001	-1.5462					37	16	3	0	0	0	0.027462	1	7186	7186		31.955	0	1	49051	+		33326	25858	27446	27471	36691	36691					0.055897956993931075
LNKPNYII	8	Unmodified	_LNKPNYII_					0	0	0			REV__ENST00000446317.1_1_20:3470413-3470686:-|nuORF	REV__ENST00000446317.1_1_20:3470413-3470686:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.26904296875	2	487.78711	973.559667	-0.13502	-6.586E-05	-4.372	-0.0021326	-4.507	-0.0021985	487.7847681467762	69.038	0.85974	69.038	68.692	69.552	0					50	20	4	0	0	0	0.028476	1	6602	6602		18.324	7.4589	1	8383800	+		33327	22360	27447	27472	36692	36692					0.0718294831123103
LNKRKYITP	9	Unmodified	_LNKRKYITP_					0	0	0			REV__ENSG00000179104|ENST00000321196|TMTC2	REV__ENSG00000179104|ENST00000321196|TMTC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.3004150390625	2	566.84549	1131.67643	2.3713	0.0013441	3.3022	0.0018718	5.6734	0.003216	566.847209664093	137.14	0.67346	137.14	136.87	137.54	0					29	13	3	0	0	0	0.027462	1	16005	16005		25.574	2.0514	1	77226	+		33328	22101	27448	27473	36693	36693					0.11585686530997918
LNKSKNCEG	9	Unmodified	_LNKSKNCEG_					0	0	0		ENST00000565981.5_1_16:58539993-58546041:+|nuORF	ENST00000565981.5_1_16:58539993-58546041:+|nuORF	ENST00000565981.5_1_16:58539993-58546041:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	496.76019287109375	2	496.745116	991.475679	0.02363	1.1738E-05	0.065693	3.2632E-05	0.089323	4.4371E-05	496.74509053288006	73.113	0.78183	70.713	70.115	70.897	-2.3999					22	14	2	0	0	0	0.027455	1	5961	5961		42.396	10.441	1	64062			33329	13836	27449	27474	36694	36694					-0.020399508479727047
LNKSLPIEL	9	Unmodified	_LNKSLPIEL_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.8165283203125	2	513.813325	1025.6121	-0.22749	-0.00011689	3.8065	0.0019558	3.579	0.0018389	513.8151298922651	75.964	2.6418	73.025	72.401	75.043	-2.9389					148	54	4	0	0	0	0.55588	1	5998	5998		37.159	1.5408	1	2672000	+		33330	17054	27450	27475	36695	36695					0.10031486654179389
LNKVGTSLLL	10	Unmodified	_LNKVGTSLLL_					0	0	0			REV__tr|A0A7D6ZNU8|A0A7D6ZNU8_9CLOTNAD-dependentmalicenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_17810PE=3SV=1	REV__tr|A0A7D6ZNU8|A0A7D6ZNU8_9CLOTNAD-dependentmalicenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_17810PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.3362426757812	2	529.334424	1056.6543	2.2952	0.001215	0.12965	6.8626E-05	2.4249	0.0012836	529.3343805633868	121.74	0.69962	121.74	121.47	122.17	0					28	14	3	0	0	0	0.42082	1	14014	14014		65.465	3.358	1	332690	+		33331	32124	27451	27476	36696	36696					0.1282346206260172
LNKVGTSLLL	10	Unmodified	_LNKVGTSLLL_					0	0	0			REV__tr|A0A7D6ZNU8|A0A7D6ZNU8_9CLOTNAD-dependentmalicenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_17810PE=3SV=1	REV__tr|A0A7D6ZNU8|A0A7D6ZNU8_9CLOTNAD-dependentmalicenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_17810PE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	529.334424	1056.6543	2.2952	0.001215	0.12965	6.8626E-05	2.4249	0.0012836	529.3343805633868	121.74	0.69962	121.74	121.47	122.17	0	-0.29828	-0.00033087	NaN	65.465	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	332690	+		33332	32124	27451	27476							0.1282346206260172
LNKVLRAKY	9	Unmodified	_LNKVLRAKY_					0	0	0			REV__ENST00000490939.1_1_6:25087010-25108891:-|nuORF	REV__ENST00000490939.1_1_6:25087010-25108891:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	553.8189086914062	2	552.848033	1103.68151	0.52201	0.00028859	-0.9317	-0.00051509	-0.40969	-0.0002265	552.847374834264	32.116	0.2477	29.406	29.283	29.53	-2.7097					6	4	2	0	0	0	0.027462	1	1048	1048		24.203	5.8783	1	8661.8	+		33333	26665	27452	27477	36697	36697					0.13381990393600063
LNKVRRSFN	9	Unmodified	_LNKVRRSFN_					0	0	0		tr|A0A7D6ZHW2|A0A7D6ZHW2_9CLOTCobyricacidsynthaseOS=ClostridiumintestinaleOX=36845GN=cobQPE=3SV=1	tr|A0A7D6ZHW2|A0A7D6ZHW2_9CLOTCobyricacidsynthaseOS=ClostridiumintestinaleOX=36845GN=cobQPE=3SV=1	tr|A0A7D6ZHW2|A0A7D6ZHW2_9CLOTCobyricacidsynthaseOS=ClostridiumintestinaleOX=36845GN=cobQPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3294067382812	2	567.330539	1132.64652	-2.3399	-0.0013275	0.99796	0.00056617	-1.3419	-0.00076131	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.56889	1	14625	14625		35.618	1.4457	1	241060			33334	35593	27453	27478	36698	36698					0.0855074758567298
LNLCQLLAL	9	Unmodified	_LNLCQLLAL_					0	0	0			REV__ENST00000563874.5_2_16:28488839-28493793:-|nuORF	REV__ENST00000563874.5_2_16:28488839-28493793:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	500.7950134277344	2	500.79662	999.578688	-0.33551	-0.00016802	-3.4741	-0.0017398	-3.8096	-0.0019078	500.7948099501536	108.45	4.1006	108.22	107.63	111.73	-0.22498					184	82	6	0	0	0	0.46377	1	10144	10144		45.952	1.4209	1	2094300	+		33335	22723	27454	27479	36699	36699					0.07888161610628686
LNLCQLLAL	9	Unmodified	_LNLCQLLAL_					0	0	0			REV__ENST00000563874.5_2_16:28488839-28493793:-|nuORF	REV__ENST00000563874.5_2_16:28488839-28493793:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	500.7947082519531	2	500.79662	999.578688	-0.44531	-0.00022301	-3.6859	-0.0018459	-4.1312	-0.0020689	500.79474539888093	109.47	3.7802	108.32	107.57	111.35	-1.1444					188	73	5	0	0	0	0.13482	1	7841	7841		87.754	18.127	1	2461100	+		33336	22723	27454	27479	36700	36700					0.07888161610628686
LNLFGKLLHR	10	Unmodified	_LNLFGKLLHR_					0	0	0			REV__ENST00000417011.1_1_3:195273449-195273572:+|nuORF	REV__ENST00000417011.1_1_3:195273449-195273572:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	605.8721923828125	2	605.874582	1209.73461	-4.8731	-0.0029525	0.61376	0.00037186	-4.2593	-0.0025806	605.8747875580638	157.58	1.169	156.04	155.73	156.9	-1.545					92	31	4	0	0	0	0.82648	1	15627	15627		15.642	3.4351	1	205220	+		33337	25557	27455	27480	36701	36701					0.13813368176261065
LNLFLCHSF	9	Unmodified	_LNLFLCHSF_					0	0	0			REV__ENST00000444465.1_1_6:166401068-166401386:-|nuORF	REV__ENST00000444465.1_1_6:166401068-166401386:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.3280029296875	2	547.278595	1092.54264	-0.45204	-0.00024739	1.0259	0.00056144	0.57384	0.00031405	547.2796431703737	105.36	0.84818	103.35	103.1	103.95	-2.0161					28	16	2	0	0	0	0.027462	1	9630	9630		25.45	1.2474	1	57208	+		33338	25877	27456	27481	36702	36702					6.704433781123953E-05
LNLFLQVDA	9	Unmodified	_LNLFLQVDA_					0	0	0		ENSG00000175305|ENST00000308108|CCNE2;nc|ENSG00000175305|O96020-2|CCNE2	ENSG00000175305|ENST00000308108|CCNE2	ENSG00000175305|ENST00000308108|CCNE2	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.8121948242188	2	516.78985	1031.56515	-0.22861	-0.00011815	1.841	0.00095142	1.6124	0.00083327	516.7912698341181	65.008	0.51059	65.008	64.875	65.385	0					17	12	2	0	0	0	0.027462	1	5932	5932		14.137	0	1	193360			33339	7533	27457	27482	36703	36703					0.05062627103052364
LNLGENPDF	9	Unmodified	_LNLGENPDF_					0	0	0		ENST00000288111.11_1_14:24768318-24768879:-|nuORF	ENST00000288111.11_1_14:24768318-24768879:-|nuORF	ENST00000288111.11_1_14:24768318-24768879:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	509.7493896484375	2	509.745639	1017.47673	2.3295	0.0011875	3.3944	0.0017303	5.7239	0.0029177	509.747268773949	120.71	1.131	120.71	120.44	121.57	0					47	25	3	0	0	0	0.33652	1	13924	13924		58.782	4.0056	1	561530			33340	10081	27458	27483	36704	36704					-0.03131413207427158
LNLHLYNSI	9	Unmodified	_LNLHLYNSI_					0	0	0		L1ME4a_dup12675|chr6:37045387-37045843:+|1.4283673080813548|0.2832341124959364|2.33|429.0|29|2|anti-sense	L1ME4a_dup12675|chr6:37045387-37045843:+|1.4283673080813548|0.2832341124959364|2.33|429.0|29|2|anti-sense	L1ME4a_dup12675|chr6:37045387-37045843:+|1.4283673080813548|0.2832341124959364|2.33|429.0|29|2|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	543.8018798828125	2	543.800749	1085.58694	1.3819	0.00075146	0.84709	0.00046065	2.229	0.0012121	543.8010236157509	91.169	0.64912	91.169	90.976	91.625	0					36	15	4	0	0	0	0.11471	1	9800	9800		93.195	2.4188	1	4272900			33341	14618	27459	27484	36705	36705					0.04757431851612637
LNLIAVAGFVL	11	Unmodified	_LNLIAVAGFVL_					0	0	0		ENSG00000185274|ENST00000333538|GALNT17	ENSG00000185274|ENST00000333538|GALNT17	ENSG00000185274|ENST00000333538|GALNT17	MULTI-SECPEP	OvCa9_classI_Rep2	2	564.79736328125	2	565.352617	1128.69068	0.036372	2.0563E-05	-3.6556	-0.0020667	-3.6192	-0.0020461	565.3502913470929	31.671	0.39469	28.961	28.838	29.233	-2.7097					13	7	3	0	0	0	0.026339	1	997	997		15.642	3.435	1	20492			33342	8241	27460	27485	36706	36706					0.13148338959263128
LNLINRYWRLY	11	Unmodified	_LNLINRYWRLY_					0	0	0			REV__tr|A0A553SHT4|A0A553SHT4_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_13625PE=4SV=1	REV__tr|A0A553SHT4|A0A553SHT4_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_13625PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.79534912109375	3	508.620899	1522.84087	-0.57902	-0.0002945	4.134	0.0021027	3.555	0.0018082	508.6229441660334	39.565	0.46605	39.565	39.332	39.798	0					15	10	2	0	0	0	0.026364	1	2305	2305		9.2118	0.41249	1	327030	+		33343	29837	27461	27486	36707	36707					0.1003607895092955
LNLIRRHQQKK	11	Unmodified	_LNLIRRHQQKK_					0	0	0		ENST00000367450.7_1_1:192998338-192998428:-|nuORF	ENST00000367450.7_1_1:192998338-192998428:-|nuORF	ENST00000367450.7_1_1:192998338-192998428:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.809326171875	3	478.631909	1432.8739	0.98867	0.00047321	-0.38611	-0.0001848	0.60256	0.0002884	478.6320701768437	37.429	1.0473	34.537	34.242	35.289	-2.8925					46	20	3	0	0	0	0.026364	1	1388	1388		9.2118	0	1	53810			33344	10844	27462	27487	36708	36708					0.17477705793612586
LNLITLTPL	9	Unmodified	_LNLITLTPL_					0	0	0		HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|59|2|sense	HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|59|2|sense	HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|59|2|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.3055725097656	2	499.318243	996.621933	-0.77635	-0.00038765	1.7578	0.00087768	0.9814	0.00049003	499.31883594678993	99.2	1.4341	96.875	96.433	97.867	-2.3253					67	27	4	0	0	0	0.027462	1	8789	8789		27.882	10.517	1	143050			33345	14445	27463	27488	36709	36709					0.12348674659574499
LNLIVGFFL	9	Unmodified	_LNLIVGFFL_					0	0	0		ENST00000540200.5_1_17:26674994-26675081:-|nuORF	ENST00000540200.5_1_17:26674994-26675081:-|nuORF	ENST00000540200.5_1_17:26674994-26675081:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	518.3173828125	2	518.315503	1034.61645	0.17843	9.2486E-05	2.7827	0.0014423	2.9611	0.0015348	518.3168968039378	134.8	1.0273	134.58	133.9	134.93	-0.22696					39	20	3	0	0	0	0.64339	1	13367	13367		26.796	0.10319	1	135940			33346	13448	27464	27489	36710	36710					0.10052995867749814
LNLKEDHEV	9	Unmodified	_LNLKEDHEV_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000483900.1_1_1:247015289-247040365:-|nuORF;ENST00000420969.1_1_2:162357792-162360000:-|nuORF;ENST00000470300.5_1_1:247004234-247028597:-|nuORF	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.8271484375	2	548.785296	1095.55604	0.69083	0.00037911	-4.3248	-0.0023734	-3.634	-0.0019943	548.7829131875826	158.08	1.0882	158.08	157.65	158.74	0					36	22	2	0	0	0	0.027462	1	18488	18488		14.865	0.72775	1	37907			33347	5666	27465	27490	36711	36711					0.012082337467063553
LNLKVSHG	8	Unmodified	_LNLKVSHG_					0	0	0			REV__CA12|p.R112Tfs*16|1|0.06|ENSG00000074410|chr15:63345572-63345573|-/T|frameshift_variant	REV__CA12|p.R112Tfs*16|1|0.06|ENSG00000074410|chr15:63345572-63345573|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.28863525390625	2	434.255977	866.497401	1.9706	0.00085576	0.43427	0.00018859	2.4049	0.0010443	434.2557507799146	85.567	0.63366	82.921	82.66	83.293	-2.6463					18	12	2	0	0	0	0.028476	1	7206	7206		60.972	39.012	1	27308	+		33348	15722	27466	27491	36712	36712					0.05881221962908967
LNLLAGKP	8	Unmodified	_LNLLAGKP_					0	0	0			REV__ENSG00000105851|ENST00000496166|PIK3CG	REV__ENSG00000105851|ENST00000496166|PIK3CG	MULTI-SECPEP	OvCa9_classI_Rep4_	4	412.7347717285156	2	413.263271	824.511988	1.4113	0.00058325	-1.2531	-0.00051786	0.15822	6.5388E-05	413.2622064029119	36.96	0.24843	34.067	33.943	34.192	-2.8925					7	4	2	0	0	0	0.028476	1	1319	1319		31.955	0	1	5996	+		33349	17761	27467	27492	36713	36713					0.09271294111044881
LNLLKHLL	8	Unmodified	_LNLLKHLL_					0	0	0			REV__ENST00000428881.1_1_1:171652270-171652387:-|nuORF	REV__ENST00000428881.1_1_1:171652270-171652387:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	482.321044921875	2	482.32112	962.627687	0.3668	0.00017692	-0.69766	-0.0003365	-0.33086	-0.00015958	482.3206528422044	112.43	2.0239	112.3	111.98	114.01	-0.12174					104	40	5	0	0	0	0.65582	1	10675	10675		52.299	4.3836	1	681590	+		33350	25696	27468	27493	36714	36714					0.14487817961901328
LNLLKVHR	8	Unmodified	_LNLLKVHR_					0	0	0			REV__EIF2C2-TRAPPC9|2|fusion	REV__EIF2C2-TRAPPC9|2|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	496.7604064941406	2	496.821818	991.629084	-0.43283	-0.00021504	-0.11117	-5.5234E-05	-0.54401	-0.00027027	496.82156350264313	74.081	0.78809	72.11	71.798	72.586	-1.9711					25	14	3	0	0	0	0.028476	1	6031	6031		24.203	5.8783	1	25756	+		33351	16349	27469	27494	36715	36715					0.13293452050652377
LNLLRYLVI	9	Unmodified	_LNLLRYLVI_					0	0	0		ENSG00000174842|ENST00000370360|GLMN	ENSG00000174842|ENST00000370360|GLMN	ENSG00000174842|ENST00000370360|GLMN	MULTI-MSMS	OvCa99_classI_Rep5	1	558.8619384765625	2	558.860609	1115.70667	2.0917	0.001169	0.1499	8.3775E-05	2.2416	0.0012527	558.8605653514277	93.201	0.99605	93.201	92.803	93.799	0					54	23	4	0	0	0	0.36502	1	10116	10116		55.504	0	1	1907400			33352	7497	27470	27495	36716	36716					0.1534404519616146
LNLLSFSSL	9	Unmodified	_LNLLSFSSL_					0	0	0		ENST00000463586.1_1_1:171481117-171481318:+|nuORF	ENST00000463586.1_1_1:171481117-171481318:+|nuORF	ENST00000463586.1_1_1:171481117-171481318:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.2547302246094	2	497.2844	992.554247	-0.076899	-3.8241E-05	-1.1524	-0.00057305	-1.2292	-0.00061129	497.28362114094716	78.383	0.81548	75.567	75.018	75.834	-2.8165					27	16	2	0	0	0	0.027462	1	6251	6251		27.882	3.6795	1	58853			33353	12229	27471	27496	36717	36717					0.057672247287769096
LNLLSPLRA	9	Unmodified	_LNLLSPLRA_					0	0	0		ENST00000392722.3_1_X:100793789-100794143:-|nuORF	ENST00000392722.3_1_X:100793789-100794143:-|nuORF	ENST00000392722.3_1_X:100793789-100794143:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.8128967285156	2	498.813659	995.612765	-0.18357	-9.1566E-05	0.030199	1.5064E-05	-0.15337	-7.6502E-05	498.8134984293313	106.91	1.9144	106.6	106.27	108.19	-0.30836					85	38	4	0	0	0	0.21395	1	9966	9966		73.975	0	1	419820			33354	11233	27472	27497	36718	36718					0.114783260938907
LNLLYVQA	8	Unmodified	_LNLLYVQA_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.D1277Afs*54|1|0.12|ENSG00000137076|chr9:35711644-35711645|-/G|frameshift_variant;ENST00000378192.2_1_9:35723947-35725691:-|nuORF;TLN2|p.A451Gfs*14|1|0.13|ENSG00000171914|chr15:62697744-62697745|-/A|frameshift_variant;ENSG00000171914|ENST00000636159|TLN2;TLN2|p.L2360Pfs*51|1|0.07|ENSG00000171914|chr15:62833577-62833578|-/T|frameshift_variant;TLN2|p.K1007*|1|0.28|ENSG00000171914|chr15:62722378-62722396|CCAAAGCCGCAGTGCCCAC/-|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.2730712890625	2	467.273835	932.533118	0.94037	0.00043941	-3.9585	-0.0018497	-3.0182	-0.0014103	467.27187095407567	34.305	1.0512	31.517	31.249	32.301	-2.7881					38	20	3	0	0	0	0.7043	1	993	993		42.474	13.325	1	80921			33355	4552;7248	27473	27498	36719	36719					0.06415259419895847
LNLMWMLL	8	Unmodified	_LNLMWMLL_					0	0	0		ENST00000321757.10_1_5:162940621-162940663:+|nuORF	ENST00000321757.10_1_5:162940621-162940663:+|nuORF	ENST00000321757.10_1_5:162940621-162940663:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.3054809570312	2	517.282292	1032.55003	-0.89802	-0.00046453	3.1635	0.0016364	2.2655	0.0011719	517.2834464692139	102.2	0.74286	101.51	101.19	101.93	-0.68459					19	14	2	0	0	0	0.028476	1	9433	9433		29.842	15.177	1	16360			33356	10377	27474	27499	36720	36720					0.03505720709836169
LNLMWMLL	8	Unmodified	_LNLMWMLL_					0	0	0		ENST00000321757.10_1_5:162940621-162940663:+|nuORF	ENST00000321757.10_1_5:162940621-162940663:+|nuORF	ENST00000321757.10_1_5:162940621-162940663:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	517.282292	1032.55003	-0.56172	-0.00029057	4.5719	0.002365	4.0102	0.0020744	517.7860766571506	101.74	0.34622	101.74	101.61	101.95	0	0.11304	0.00075843	NaN	52.299	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	390200			33357	10377	27474	27499							0.03505720709836169
LNLPKELP	8	Unmodified	_LNLPKELP_					0	0	0			REV__ENSG00000198829|ENST00000362032|SUCNR1	REV__ENSG00000198829|ENST00000362032|SUCNR1	MULTI-MSMS	OvCa9_classI_Rep2	2	462.28106689453125	2	462.28166	922.548768	-1.0078	-0.00046591	1.2784	0.00059098	0.27057	0.00012508	462.2819699223311	116.57	1.0882	116.45	116.07	117.16	-0.12868					49	21	4	0	0	0	0.60331	1	11161	11161		63.306	0.32785	1	156910	+		33358	23071	27475	27500	36721	36721					0.0843954593693752
LNLPLSPQG	9	Unmodified	_LNLPLSPQG_					0	0	0		ENST00000545700.5_1_12:6562264-6567817:+|nuORF;nc|ENSG00000139192|Q9BX59-5|TAPBPL;nc|ENSG00000139192|Q9BX59-4|TAPBPL;nc|ENSG00000139192|Q9BX59-6|TAPBPL;nc|ENSG00000139192|Q9BX59-3|TAPBPL;ENST00000539384.5_1_12:6560901-6571312:+|nuORF;ENSG00000139192|ENST00000266556|TAPBPL;nc|ENSG00000139192|Q9BX59-2|TAPBPL;nc|ENSG00000139192|Q9BX59-7|TAPBPL	ENST00000545700.5_1_12:6562264-6567817:+|nuORF	ENST00000545700.5_1_12:6562264-6567817:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	469.2767333984375	2	469.768917	937.523281	-0.56768	-0.00026668	1.0006	0.00047005	0.43291	0.00020337	469.7693244167889	77.079	1.041	75.29	74.843	75.884	-1.7894					59	19	4	0	0	0	0.027418	1	6439	6439		49.442	32.077	1	399730			33359	4754	27476	27501	36722	36722					0.052020714145328384
LNLPRGENDKL	11	Unmodified	_LNLPRGENDKL_					0	0	0			REV__tr|A0A7D6VTR2|A0A7D6VTR2_9CLOTPhagemajorcapsidproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10190PE=4SV=1	REV__tr|A0A7D6VTR2|A0A7D6VTR2_9CLOTPhagemajorcapsidproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10190PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	423.57122802734375	3	423.570093	1267.68845	0.17418	7.3779E-05	1.937	0.00082047	2.1112	0.00089425	423.5709183329439	44.955	0.62583	44.955	44.706	45.332	0					36	13	3	0	0	0	0.46188	1	3080	3080		56.632	15.206	1	716870	+		33360	31625	27477	27502	36723	36723					0.0653125848352829
LNLPSLLLQP	10	Unmodified	_LNLPSLLLQP_					0	0	0			REV__ENST00000473645.6_2_3:167443219-167452692:-|nuORF	REV__ENST00000473645.6_2_3:167443219-167452692:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.818359375	2	554.342249	1106.66995	1.8197	0.0010087	3.5624	0.0019748	5.3821	0.0029835	554.3442614674102	126.53	1.6301	126.53	126.18	127.81	0					97	35	5	0	0	0	0.02661	1	14796	14796		49.442	0	1	5413700	+		33361	26331	27478	27503	36724	36724					0.12087748579619984
LNLPSLLLQP	10	Unmodified	_LNLPSLLLQP_					0	0	0			REV__ENST00000473645.6_2_3:167443219-167452692:-|nuORF	REV__ENST00000473645.6_2_3:167443219-167452692:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.818359375	2	554.342249	1106.66995	1.8582	0.0010301	4.2773	0.0023711	6.1355	0.0034012	554.3444703240614	128.02	0.8392	128.02	127.67	128.51	0					24	17	2	0	0	0	0.02661	1	14796	14796		49.442	0	1	33128	+		33362	26331	27478	27503	36725	36725					0.12087748579619984
LNLRLVIKL	9	Unmodified	_LNLRLVIKL_					0	0	0			REV__tr|A0A7D6VS42|A0A7D6VS42_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09435PE=4SV=1	REV__tr|A0A7D6VS42|A0A7D6VS42_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09435PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	541.3765869140625	2	541.376426	1080.7383	-1.8893	-0.0010228	0.47778	0.00025866	-1.4115	-0.00076417	541.3765459194157	104.3	0.71806	104.3	103.98	104.7	0					49	16	4	0	0	0	0.40667	1	11665	11665		51.335	7.2187	1	2704900	+		33363	31468	27479	27504	36726	36726					0.20116037950128884
LNLSHLHKP	9	Unmodified	_LNLSHLHKP_					0	0	0			REV__ENST00000579314.5_1_17:61565977-61574724:+|nuORF	REV__ENST00000579314.5_1_17:61565977-61574724:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	529.8101196289062	2	529.808908	1057.60326	-0.50017	-0.00026499	-1.0909	-0.00057797	-1.5911	-0.00084297	529.8081448658007	81.247	2.3145	78.925	78.44	80.755	-2.3226					139	45	5	0	0	0	0.35444	1	4520	4520		56.721	3.3696	1	2361100	+		33364	20622	27480	27505	36727	36727					0.07676557808372309
LNLSPHGTF	9	Unmodified	_LNLSPHGTF_					0	0	0		chr17:7560817-7561246|224|12.81|0.0|20.29|+|1|TNFSF13,None|1;nc|ENSG00000161955|O75888-5|TNFSF13;nc|ENSG00000161955|O75888-4|TNFSF13;nc|ENSG00000161955|O75888-2|TNFSF13;nc|ENSG00000161955|O75888-3|TNFSF13;ENSG00000161955|ENST00000338784|TNFSF13;nc|ENSG00000239697|O43508-2|TNFSF12	chr17:7560817-7561246|224|12.81|0.0|20.29|+|1|TNFSF13,None|1	chr17:7560817-7561246|224|12.81|0.0|20.29|+|1|TNFSF13,None|1	MULTI-MSMS	OvCa9_classI_Rep2	2	493.2600402832031	2	493.258717	984.50288	0.94274	0.00046501	2.21	0.0010901	3.1527	0.0015551	493.25962022960243	41.06	1.0832	38.351	37.995	39.078	-2.7097					52	21	4	0	0	0	0.56889	1	2125	2125		35.618	2.1027	1	169120			33365	393	27481	27506	36728	36728					0.010009007547068904
LNLTKHRIFP	10	Unmodified	_LNLTKHRIFP_					0	0	0			REV__ENST00000485987.1_1_13:76397799-76412346:+|nuORF	REV__ENST00000485987.1_1_13:76397799-76412346:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8679809570312	2	619.87204	1237.72953	-3.1194	-0.0019336	-1.2014	-0.00074472	-4.3208	-0.0026783	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.74374	1	15189	15189		25.574	0	1	806750	+		33366	26576	27482	27507	36729	36729					0.1201706431365892
LNLVRLIP	8	Unmodified	_LNLVRLIP_					0	0	0			REV__ENSG00000155530|ENST00000285928|LRGUK	REV__ENSG00000155530|ENST00000285928|LRGUK	MULTI-MSMS	OvCa9_classI_Rep4_	4	469.3136291503906	2	469.313295	936.612037	-0.19784	-9.2849E-05	0.13468	6.3207E-05	-0.063161	-2.9642E-05	469.31321334770007	121.04	0.91049	119.69	119.39	120.31	-1.3479					40	17	3	0	0	0	0.65582	1	11418	11418		52.299	0	1	100360	+		33367	20428	27483	27508	36730	36730					0.14119531444839595
LNLWIVQL	8	Unmodified	_LNLWIVQL_					0	0	0		nc|ENSG00000106771|Q9H330-4|TMEM245;TMEM245|p.L666Sfs*9|1|0.2|ENSG00000106771|chr9:109050410-109050411|-/A|frameshift_variant;ENSG00000106771|ENST00000374586|TMEM245	nc|ENSG00000106771|Q9H330-4|TMEM245	nc|ENSG00000106771|Q9H330-4|TMEM245	MULTI-MSMS	OvCa99_classI_Rep5	1	499.8042907714844	2	499.805303	997.596052	0.9676	0.00048361	-2.9163	-0.0014576	-1.9487	-0.00097398	499.8037715724923	80.974	0.71129	80.974	80.702	81.413	0					49	16	4	0	0	0	0.2826	2	8318	8318;8352		110.34	14.147	1	5644200			33368	2572	27484	27509	36731;36732	36731					0.09715825207945272
LNLWIVQL	8	Unmodified	_LNLWIVQL_					0	0	0		nc|ENSG00000106771|Q9H330-4|TMEM245;TMEM245|p.L666Sfs*9|1|0.2|ENSG00000106771|chr9:109050410-109050411|-/A|frameshift_variant;ENSG00000106771|ENST00000374586|TMEM245	nc|ENSG00000106771|Q9H330-4|TMEM245	nc|ENSG00000106771|Q9H330-4|TMEM245	MULTI-MATCH	OvCa9_classI_Rep2	2		2	499.805303	997.596052	-0.0051711	-2.5845E-06	-3.4359	-0.0017173	-3.441	-0.0017199	499.80350116006656	82.843	0.55421	81.244	80.906	81.46	-1.5988	0.16266	-0.00043608	NaN	110.34	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18884			33369	2572	27484	27509							0.09715825207945272
LNLWIVQL	8	Unmodified	_LNLWIVQL_					0	0	0		nc|ENSG00000106771|Q9H330-4|TMEM245;TMEM245|p.L666Sfs*9|1|0.2|ENSG00000106771|chr9:109050410-109050411|-/A|frameshift_variant;ENSG00000106771|ENST00000374586|TMEM245	nc|ENSG00000106771|Q9H330-4|TMEM245	nc|ENSG00000106771|Q9H330-4|TMEM245	MULTI-MATCH	OvCa9_classI_Rep3	3		2	499.805303	997.596052	-1.2694	-0.00063444	-3.0661	-0.0015324	-4.3354	-0.0021669	499.8039626515321	83.323	0.44098	81.026	80.781	81.222	-2.2963	-0.055134	-6.6421E-05	NaN	110.34	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31281			33370	2572	27484	27509							0.09715825207945272
LNLYALRTV	9	Unmodified	_LNLYALRTV_					0	0	0			REV__tr|A0A553SMI7|A0A553SMI7_NIACIDUF624domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22555PE=4SV=1	REV__tr|A0A553SMI7|A0A553SMI7_NIACIDUF624domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22555PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	531.2911987304688	2	531.818941	1061.62333	-0.58867	-0.00031306	-0.57165	-0.00030402	-1.1603	-0.00061708	531.8189189031815	82.239	0.79752	79.943	79.584	80.381	-2.2963					23	15	2	0	0	0	0.027462	1	4647	4647		34.173	11.13	1	28107	+		33371	30334	27485	27510	36733	36733					0.09498308748334239
LNLYALRTV	9	Unmodified	_LNLYALRTV_					0	0	0			REV__tr|A0A553SMI7|A0A553SMI7_NIACIDUF624domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22555PE=4SV=1	REV__tr|A0A553SMI7|A0A553SMI7_NIACIDUF624domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22555PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	531.818941	1061.62333	-0.5216	-0.0002774	-1.009	-0.00053662	-1.5306	-0.00081401	531.8184198127541	81.321	0.55859	79.672	79.465	80.023	-1.6485	-0.13532	-0.00018377	NaN	47.657	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20824	+		33372	30334	27485	27510							0.09498308748334239
LNMPFEDLQ	9	Unmodified	_LNMPFEDLQ_					0	0	0			REV__ENSG00000185070|ENST00000330753|FLRT2	REV__ENSG00000185070|ENST00000330753|FLRT2	MULTI-SECPEP	OvCa9_classI_Rep3	3	553.2976684570312	2	553.762975	1105.5114	0.93083	0.00051546	-4.4231	-0.0024494	-3.4923	-0.0019339	553.760443724198	123.01	0.68199	121.97	121.68	122.36	-1.0377					15	12	2	0	0	0	0.027462	1	9510	9510		42.396	0	1	22316	+		33373	22478	27486	27511	36734	36734					-0.03713913390970447
LNMTKYEM	8	2 Oxidation (M)	_LNM(Oxidation (M))TKYEM(Oxidation (M))_		LNM(1)TKYEM(1)		LNM(53)TKYEM(53)	0	0	2			REV__ENST00000479515.1_1_7:77539605-77549765:+|nuORF	REV__ENST00000479515.1_1_7:77539605-77549765:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	531.236083984375	2	531.235735	1060.45692	-0.68688	-0.00036489	0.3714	0.0001973	-0.31548	-0.00016759	531.2360994159188	37.595	0.54902	37.595	37.391	37.94	0					24	11	3	0	0	0	0.65062	1	2076	2076		53.351	11.925	1	472160	+		33374	26438	27487	27512	36735	36735		590;591			-0.0708924853404369
LNMYGFRKVV	10	Unmodified	_LNMYGFRKVV_					0	0	0		nc|ENSG00000025156|Q03933-2|HSF2;ENSG00000025156|ENST00000368455|HSF2;nc|ENSG00000102878|Q9ULV5-2|HSF4;nc|ENSG00000185122|Q00613-2|HSF1;ENSG00000185122|ENST00000528838|HSF1;ENSG00000102878|ENST00000521374|HSF4	nc|ENSG00000025156|Q03933-2|HSF2;ENSG00000102878|ENST00000521374|HSF4	nc|ENSG00000025156|Q03933-2|HSF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	613.8154907226562	2	613.839351	1225.66415	1.6989	0.0010429	1.545	0.00094838	3.244	0.0019913	613.8410838777548	122.84	0.73914	122.84	122.49	123.23	0					27	15	3	0	0	0	0.026802	1	14125	14125		34.173	12.213	1	280210			33375	1045;2261	27488	27513	36736	36736					0.06034326796293499
LNNAAHAGKAL	11	Unmodified	_LNNAAHAGKAL_					0	0	0		ENSG00000183044|ENST00000268251|ABAT;ENST00000566590.5_1_16:8807641-8875284:+|nuORF	ENSG00000183044|ENST00000268251|ABAT	ENSG00000183044|ENST00000268251|ABAT	MULTI-MSMS	OvCa99_classI_Rep5	1	540.3046875	2	540.301447	1078.58834	0.78568	0.0004245	3.843	0.0020764	4.6287	0.0025009	540.3034088018235	103.3	1.347	103.3	102.59	103.94	0					76	31	4	0	0	0	0.26031	1	11554	11554		71.877	0	1	9691800			33376	8048	27489	27514	36737	36737					0.052190659403549944
LNNAAHAGKAL	11	Unmodified	_LNNAAHAGKAL_					0	0	0		ENSG00000183044|ENST00000268251|ABAT;ENST00000566590.5_1_16:8807641-8875284:+|nuORF	ENSG00000183044|ENST00000268251|ABAT	ENSG00000183044|ENST00000268251|ABAT	MULTI-MATCH	OvCa9_classI_Rep2	2		2	540.301447	1078.58834	-1.3494	-0.00072908	-1.3311	-0.0007192	-2.6805	-0.0014483	540.2981881383997	103.9	1.1892	103.33	103.03	104.22	-0.57639	0.012757	-0.0049723	NaN	71.877	74	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207510			33377	8048	27489	27514							0.052190659403549944
LNNATDSWAAH	11	Unmodified	_LNNATDSWAAH_					0	0	0			REV__ENSG00000124201|ENST00000396105|ZNFX1	REV__ENSG00000124201|ENST00000396105|ZNFX1	MULTI-SECPEP	OvCa99_classI_Rep5	1	600.2239990234375	2	600.275626	1198.5367	2.1029	0.0012623	-1.8753	-0.0011257	0.22757	0.0001366	600.2746215197335	120.2	0.27232	120.2	120	120.27	0					7	5	2	0	0	0	0.025528	1	13796	13796		35.152	8.4591	1	228900	+		33378	18672	27490	27515	36738	36738					-0.05462722544211829
LNNHGPMYKE	10	Unmodified	_LNNHGPMYKE_					0	0	0		ENST00000483823.1_1_3:88997907-88998639:+|nuORF	ENST00000483823.1_1_3:88997907-88998639:+|nuORF	ENST00000483823.1_1_3:88997907-88998639:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	601.7913208007812	2	601.784773	1201.55499	2.8712	0.0017279	4.198	0.0025263	7.0692	0.0042541	601.7870460272765	98.935	0.76273	98.935	98.725	99.488	0					41	18	3	0	0	0	0.32141	1	10919	10919		78.264	12.798	1	4010800			33379	12590	27491	27516	36739	36739					-0.037723038938338505
LNNIYIFL	8	Unmodified	_LNNIYIFL_					0	0	0		tr|A0A553SHR0|A0A553SHR0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13420PE=4SV=1	tr|A0A553SHR0|A0A553SHR0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13420PE=4SV=1	tr|A0A553SHR0|A0A553SHR0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13420PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	505.2917175292969	2	505.289485	1008.56442	0.80415	0.00040633	0.66421	0.00033562	1.4684	0.00074195	505.2897841208604	151.49	0.58604	151.49	151.25	151.83	0					20	11	3	0	0	0	0.66704	1	17735	17735		50.025	5.4935	1	74963			33380	33299	27492	27517	36740	36740					0.060478324539985806
LNNKELKEV	9	Unmodified	_LNNKELKEV_					0	0	0			REV__tr|A0A7D6VVC5|A0A7D6VVC5_9CLOTLeucine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=leuSPE=3SV=1	REV__tr|A0A7D6VVC5|A0A7D6VVC5_9CLOTLeucine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=leuSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	543.8099975585938	2	543.811313	1085.60807	0.061836	3.3627E-05	-0.35552	-0.00019333	-0.29368	-0.00015971	543.8110823033019	113.47	1.4323	113.35	113.07	114.5	-0.11777					61	28	4	0	0	0	0.049969	1	10763	10763		118.74	5.3315	1	171940	+		33381	31713	27493	27518	36741	36741					0.06869397160448898
LNNKKLLDP	9	Unmodified	_LNNKKLLDP_					0	0	0			REV__nc|ENSG00000158055|Q8TE85|GRHL3	REV__nc|ENSG00000158055|Q8TE85|GRHL3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.313232421875	2	527.816399	1053.61824	-1.6395	-0.00086538	-2.3275	-0.0012285	-3.967	-0.0020939	527.8152920889002	54.244	0.35892	50.997	50.671	51.03	-3.2474					9	6	2	0	0	0	0.027448	1	3353	3353		35.618	0	1	324890	+		33382	28949	27494	27519	36742	36742					0.09358004885712035
LNNLALINS	9	Unmodified	_LNNLALINS_					0	0	0		nc|ENSG00000141013|O95995-2|GAS8;ENSG00000141013|ENST00000268699|GAS8;ENST00000540721.5_1_16:90089090-90108732:+|nuORF;ENST00000565062.5_1_16:90097706-90103159:+|nuORF	nc|ENSG00000141013|O95995-2|GAS8	nc|ENSG00000141013|O95995-2|GAS8	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.3050842285156	2	486.279649	970.544745	0.56233	0.00027345	-0.37066	-0.00018025	0.19167	9.3203E-05	486.2793230442575	125.01	0.34473	124.77	124.57	124.91	-0.2359					8	6	2	0	0	0	0.027232	1	12147	12147		56.721	0	1	6314.4			33383	4890	27495	27520	36743	36743					0.058294564432458174
LNNLASAHR	9	Unmodified	_LNNLASAHR_					0	0	0			REV__nc|ENSG00000133687|Q8IUR5-1|TMTC1	REV__nc|ENSG00000133687|Q8IUR5-1|TMTC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.2842712402344	2	498.27269	994.530826	1.8031	0.00089844	-2.7287	-0.0013596	-0.92561	-0.00046121	498.27124149012866	134.32	0.72284	134.32	134.06	134.78	0					22	15	2	0	0	0	0.02741	1	15645	15645		51.335	0	1	552030	+		33384	19152	27496	27521	36744	36744					0.03334223734805164
LNNLLKELPP	10	Unmodified	_LNNLLKELPP_					0	0	0			REV__DNA2|p.H1032N|1|0.11|ENSG00000138346|chr10:68416729-68416729|G/T|missense_variant	REV__DNA2|p.H1032N|1|0.11|ENSG00000138346|chr10:68416729-68416729|G/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8431396484375	2	575.845156	1149.67576	-2.8608	-0.0016474	-0.58729	-0.00033819	-3.4481	-0.0019856	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.69073	1	14482	14482		31.53	3.6476	1	356230	+		33385	16310	27497	27522	36745	36745					0.10690847091291289
LNNNAIMSIQ	10	Unmodified	_LNNNAIMSIQ_					0	0	0		ENST00000466069.5_1_1:113643045-113646336:+|nuORF;LRIG2|p.V532Gfs*39|1|0.07|ENSG00000198799|chr1:113110359-113110359|T/-|frameshift_variant;ENSG00000198799|ENST00000361127|LRIG2	ENST00000466069.5_1_1:113643045-113646336:+|nuORF	ENST00000466069.5_1_1:113643045-113646336:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.28564453125	2	559.287148	1116.55974	1.6773	0.00093807	-2.7714	-0.00155	-1.0942	-0.00061196	559.2853993749533	33.558	2.4419	30.77	30.259	32.701	-2.7881					125	48	3	0	0	0	0.6349	1	922	922		37.812	5.8567	1	122450			33386	8877	27498	27523	36746	36746					0.006125802489123089
LNNNALSLKVL	11	Unmodified	_LNNNALSLKVL_					0	0	0			REV__ENSG00000162494|ENST00000376085|LRRC38	REV__ENSG00000162494|ENST00000376085|LRRC38	MULTI-MSMS	OvCa9_classI_Rep2	2	400.2437744140625	3	400.243317	1197.70812	1.3067	0.00052301	0.10698	4.2817E-05	1.4137	0.00056583	400.2432245254957	39.743	1.7317	37.033	36.755	38.487	-2.7097					74	34	3	0	0	0	0.63942	2	1960	1960;1966		41.08	2.3265	1	139570	+		33387	20739	27499	27524	36747;36748	36747					0.11717634494289086
LNNNALSLKVL	11	Unmodified	_LNNNALSLKVL_					0	0	0			REV__ENSG00000162494|ENST00000376085|LRRC38	REV__ENSG00000162494|ENST00000376085|LRRC38	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	400.243317	1197.70812	1.6809	0.00067277	-0.35144	-0.00014066	1.3295	0.00053211	400.2430807673385	39.999	1.441	37.045	36.764	38.205	-2.9541	0.0057994	-0.00029271	NaN	41.08	67	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155530	+		33388	20739	27499	27524							0.11717634494289086
LNNNNYVL	8	Unmodified	_LNNNNYVL_					0	0	0		tr|A0A7D6VYA0|A0A7D6VYA0_9CLOTPermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00455PE=3SV=1	tr|A0A7D6VYA0|A0A7D6VYA0_9CLOTPermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00455PE=3SV=1	tr|A0A7D6VYA0|A0A7D6VYA0_9CLOTPermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00455PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	482.2497863769531	2	482.248349	962.482145	-0.97085	-0.00046819	0.35552	0.00017145	-0.61533	-0.00029674	482.24843526228574	65.853	0.90484	65.853	65.507	66.412	0					45	22	3	0	0	0	0.61758	1	6083	6083		60.294	0	1	3697400			33389	35325	27500	27525	36749	36749					-0.0005968962495899177
LNNNPNAMWF	10	Unmodified	_LNNNPNAMWF_					0	0	0			REV__nc|ENSG00000103888|Q8WUJ3-2|CEMIP	REV__nc|ENSG00000103888|Q8WUJ3-2|CEMIP	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.2392272949219	3	407.522086	1219.54443	0.9783	0.00039868	0.96926	0.00039499	1.9476	0.00079367	407.52238640268325	40.993	0.88358	40.993	40.754	41.637	0					48	19	4	0	0	0	0.026843	1	2561	2561		46.457	11.279	1	856350	+		33390	17635	27501	27526	36750	36750					-0.05656286548287426
LNNPQDPFVE	10	Unmodified	_LNNPQDPFVE_					0	0	0		ENSG00000106258|ENST00000222982|CYP3A5;ENSG00000160868|ENST00000651514|CYP3A4;ENSG00000160870|ENST00000336374|CYP3A7;ENSG00000282301|ENST00000620220|CYP3A7-CYP3A51P;nc|ENSG00000160870|P24462-2|CYP3A7	ENSG00000106258|ENST00000222982|CYP3A5;ENSG00000160870|ENST00000336374|CYP3A7	ENSG00000106258|ENST00000222982|CYP3A5	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.8118286132812	2	586.782753	1171.55095	1.9471	0.0011425	1.0541	0.00061853	3.0012	0.0017611	586.7826387038413	77.39	0.37563	77.39	77.168	77.544	0					18	8	3	0	0	0	0.027056	1	7776	7776		9.7057	0	1	350540			33391	2537;6099	27502	27527	36751	36751					-0.0279607011589178
LNNSVSGLSP	10	Unmodified	_LNNSVSGLSP_					0	0	0			REV__chr16:760821-761006|330|21.06|0.22|6.59|+|1|TE_info:MER54B,MER54B_dup345,ERVL,LTR,acceptor,+,761006,761306|MSLN,None|1	REV__chr16:760821-761006|330|21.06|0.22|6.59|+|1|TE_info:MER54B,MER54B_dup345,ERVL,LTR,acceptor,+,761006,761306|MSLN,None|1	MULTI-MSMS	OvCa99_classI_Rep5	1	494.26092529296875	2	494.258914	986.503274	-0.72896	-0.0003603	-1.3453	-0.0006649	-2.0742	-0.0010252	494.25905494402974	67.964	0.87412	67.964	67.566	68.44	0					78	21	6	0	0	0	0.42082	1	6412	6412		65.465	6.6834	1	22186000	+		33392	15939	27503	27528	36752	36752					0.009482756839133799
LNNVSARGL	9	Unmodified	_LNNVSARGL_					0	0	0			REV__nc|ENSG00000115970|Q6YHU6-6|THADA	REV__nc|ENSG00000115970|Q6YHU6-6|THADA	MULTI-MSMS	OvCa9_classI_Rep3	3	472.2719421386719	2	472.269616	942.524678	1.0028	0.00047359	2.8903	0.001365	3.8931	0.0018386	472.2708478992531	106.8	1.5119	105.53	105.22	106.73	-1.267					66	29	3	0	0	0	0.38969	1	7556	7556		52.937	1.744	1	357630	+		33393	18281	27504	27529	36753	36753					0.051117055032818826
LNNVSARGL	9	Unmodified	_LNNVSARGL_					0	0	0			REV__nc|ENSG00000115970|Q6YHU6-6|THADA	REV__nc|ENSG00000115970|Q6YHU6-6|THADA	MULTI-MATCH	OvCa9_classI_Rep2	2		2	472.269616	942.524678	-0.33278	-0.00015716	4.4963	0.0021234	4.1635	0.0019663	472.27161005898756	105.86	1.2467	105.42	105.15	106.39	-0.43642	-0.072013	0.00029211	NaN	52.937	52	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	289130	+		33394	18281	27504	27529							0.051117055032818826
LNNVSARGL	9	Unmodified	_LNNVSARGL_					0	0	0			REV__nc|ENSG00000115970|Q6YHU6-6|THADA	REV__nc|ENSG00000115970|Q6YHU6-6|THADA	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	472.269616	942.524678	1.0028	0.00047359	2.8903	0.001365	3.8931	0.0018386	472.2708478992531	106.8	1.5119	105.53	105.22	106.73	-1.267	0.03587	-0.0012248	NaN	52.937	66	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	357630	+		33395	18281	27504	27529							0.051117055032818826
LNPAHSLLE	9	Unmodified	_LNPAHSLLE_					0	0	0			REV__tr|A0A7D6W0H4|A0A7D6W0H4_9CLOTD-glyceratedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23410PE=3SV=1	REV__tr|A0A7D6W0H4|A0A7D6W0H4_9CLOTD-glyceratedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23410PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	496.7983703613281	2	497.271824	992.529095	-1.0389	-0.00051664	1.0472	0.00052076	0.0082875	4.1211E-06	497.27219167169426	55.257	0.69846	52.443	52.072	52.77	-2.8139					31	13	3	0	0	0	0.027462	1	3810	3810		34.173	0	1	112950	+		33396	31857	27505	27530	36754	36754					0.03253169926188093
LNPAQRKL	8	Unmodified	_LNPAQRKL_					0	0	0		ZNF556|p.R30Kfs*14|1|0.14|ENSG00000172000|chr19:2873581-2873581|G/-|frameshift_variant;ENSG00000172000|ENST00000307635|ZNF556	ZNF556|p.R30Kfs*14|1|0.14|ENSG00000172000|chr19:2873581-2873581|G/-|frameshift_variant	ZNF556|p.R30Kfs*14|1|0.14|ENSG00000172000|chr19:2873581-2873581|G/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	470.290283203125	2	470.290351	938.566149	0.18172	8.5461E-05	-0.59228	-0.00027854	-0.41056	-0.00019308	470.2899739869835	32.917	0.73426	32.917	32.7	33.434	0					39	14	4	0	0	0	0.50674	1	1470	1470		76.847	8.3619	1	1333500			33397	7259	27506	27531	36755	36755					0.09440886262598269
LNPFRALL	8	Unmodified	_LNPFRALL_					0	0	0			REV__nc|ENSG00000136824|O95347-2|SMC2	REV__nc|ENSG00000136824|O95347-2|SMC2	MULTI-MSMS	OvCa9_classI_Rep3	3	472.2907409667969	2	472.28982	942.565087	0.29325	0.0001385	-0.73873	-0.0003489	-0.44549	-0.0002104	472.2893679922423	99.284	1.9013	97.599	97.113	99.014	-1.685					79	37	4	0	0	0	0.60486	1	6673	6673		62.978	0	1	778780	+		33398	19406	27507	27532	36756	36756					0.09150671893701201
LNPHLNIKAFV	11	Unmodified	_LNPHLNIKAFV_					0	0	0		LGALS8|p.R233H|1|0.15|ENSG00000116977|chr1:236544809-236544809|G/A|missense_variant	LGALS8|p.R233H|1|0.15|ENSG00000116977|chr1:236544809-236544809|G/A|missense_variant	LGALS8|p.R233H|1|0.15|ENSG00000116977|chr1:236544809-236544809|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3693237304688	2	633.371872	1264.72919	-3.894	-0.0024663	-0.37753	-0.00023912	-4.2715	-0.0027055	633.3715080583703	149.82	2.9263	149.6	148.42	151.35	-0.22696					170	58	4	0	0	0	0.72459	1	15180	15180		20.947	0	1	116220			33399	14797	27508	27533	36757	36757					0.1074164459378153
LNPIKDLHL	9	Unmodified	_LNPIKDLHL_					0	0	0		ENST00000467511.1_1_9:72346973-72349163:-|nuORF;ENSG00000188647|ENST00000340434|PTAR1	ENST00000467511.1_1_9:72346973-72349163:-|nuORF	ENST00000467511.1_1_9:72346973-72349163:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	531.816650390625	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.50149	1	13874	13874		42.396	3.1433	1	166960			33400	8488	27509	27534	36758	36758					0.09498308748334239
LNPIKDLHL	9	Unmodified	_LNPIKDLHL_					0	0	0		ENST00000467511.1_1_9:72346973-72349163:-|nuORF;ENSG00000188647|ENST00000340434|PTAR1	ENST00000467511.1_1_9:72346973-72349163:-|nuORF	ENST00000467511.1_1_9:72346973-72349163:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8174438476562	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.55588	2	11340	11340;11520		37.159	5.2042	1	178650			33401	8488	27509	27534	36759;36760	36759					0.09498308748334239
LNPLNQFAD	9	Unmodified	_LNPLNQFAD_					0	0	0			REV__FSHR|p.E114D|1|0.24|ENSG00000170820|chr2:49017521-49017521|C/G|missense_variant	REV__FSHR|p.E114D|1|0.24|ENSG00000170820|chr2:49017521-49017521|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.2623901367188	2	516.261456	1030.50836	-0.80285	-0.00041448	0.31867	0.00016451	-0.48419	-0.00024997	516.2613331650292	144.43	0.73711	143	142.73	143.46	-1.4357					31	13	3	0	0	0	0.56889	1	14172	14172		35.618	6.4687	1	58071	+		33402	28145	27510	27535	36761	36761					-0.005674204534670935
LNPPSPLQIK	10	Unmodified	_LNPPSPLQIK_					0	0	0			REV__Tigger4_dup110|chr1:206077707-206078236:+|1.8187903530330864|0.069581210185122|4.71|424.0|6|1|sense	REV__Tigger4_dup110|chr1:206077707-206078236:+|1.8187903530330864|0.069581210185122|4.71|424.0|6|1|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8307495117188	2	553.832049	1105.64954	0.13277	7.3535E-05	-3.4573	-0.0019148	-3.3245	-0.0018412	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.75313	1	13884	13884		24.519	2.5593	1	400120	+		33403	29507	27511	27536	36762	36762					0.10094577919812764
LNPRDAFFSD	10	Unmodified	_LNPRDAFFSD_					0	0	0		tr|A0A7D6VY26|A0A7D6VY26_9CLOTAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_11150PE=3SV=1	tr|A0A7D6VY26|A0A7D6VY26_9CLOTAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_11150PE=3SV=1	tr|A0A7D6VY26|A0A7D6VY26_9CLOTAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_11150PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	591.32275390625	2	591.28292	1180.55129	-0.89457	-0.00052894	-4.1026	-0.0024258	-4.9972	-0.0029547	591.7815248215323	42.625	0.15725	39.644	39.566	39.723	-2.9804					4	2	2	0	0	0	0.026577	1	1988	1988		58.23	0	1	7230.1			33404	35311	27512	27537	36763	36763					-0.03176650396039804
LNPRWNEV	8	Unmodified	_LNPRWNEV_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENST00000547667.5_1_12:56531318-56532071:+|nuORF	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.3126220703125	2	514.269616	1026.52468	-0.53777	-0.00027656	-2.1408	-0.001101	-2.6786	-0.0013775	514.2682970510531	104.7	0.59504	104.7	104.49	105.09	0					23	13	3	0	0	0	0.028476	1	11782	11782		45.952	0	1	236190			33405	4792	27513	27538	36764	36764					0.01247705503283214
LNPSPLPN	8	Unmodified	_LNPSPLPN_					0	0	0			REV__ENST00000464917.5_1_1:12676606-12676750:-|nuORF	REV__ENST00000464917.5_1_1:12676606-12676750:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	426.2355651855469	2	426.23471	850.454868	1.594	0.0006794	0.93182	0.00039717	2.5258	0.0010766	426.23498290168	105.83	0.61239	105.83	105.57	106.18	0					31	13	3	0	0	0	0.56195	1	11910	11910		71.296	5.4925	1	734450	+		33406	26160	27514	27539	36765	36765					0.0236582683467077
LNPSPPQRA	9	Unmodified	_LNPSPPQRA_					0	0	0		ENST00000356244.7_2_22:41670730-41682075:-|nuORF	ENST00000356244.7_2_22:41670730-41682075:-|nuORF	ENST00000356244.7_2_22:41670730-41682075:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	490.3360595703125	2	490.269616	978.524678	0.33561	0.00016454	-2.512	-0.0012315	-2.1764	-0.001067	490.2674235574261	135.25	0.39096	135.02	134.78	135.18	-0.22696					10	7	2	0	0	0	0.027432	1	13413	13413		58.23	8.7884	1	7700.1			33407	10694	27515	27540	36766	36766					0.03455705503279205
LNPTMKFID	9	Unmodified	_LNPTMKFID_					0	0	0			REV__ENSG00000125872|ENST00000378858|LRRN4	REV__ENSG00000125872|ENST00000378858|LRRN4	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.3024291992188	2	539.78371	1077.55287	1.2437	0.00067134	-4.3098	-0.0023264	-3.0661	-0.001655	539.7812692929647	144.64	0.67946	144.64	144.31	144.99	0					20	13	2	0	0	0	0.027462	1	16903	16903		31.53	7.3271	1	54585	+		33408	18753	27516	27541	36767	36767					0.017192673683439352
LNPWAPWIL	9	Unmodified	_LNPWAPWIL_					0	0	0		ENST00000551739.5_1_12:56346469-56347287:+|nuORF;ENST00000552478.5_1_12:56346125-56347287:+|nuORF	ENST00000551739.5_1_12:56346469-56347287:+|nuORF	ENST00000551739.5_1_12:56346469-56347287:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.2627563476562	2	555.310752	1108.60695	1.6197	0.00089944	-0.82725	-0.00045938	0.79245	0.00044006	555.310445514444	130.61	0.4776	130.61	130.25	130.72	0					15	9	3	0	0	0	0.027462	1	15160	15160		26.796	7.4361	1	73399			33409	13603	27517	27542	36768	36768					0.0569922758222674
LNPYLSSGGK	10	Unmodified	_LNPYLSSGGK_					0	0	0		tr|A0A7D6VZ67|A0A7D6VZ67_9CLOTPenicillin-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18455PE=3SV=1	tr|A0A7D6VZ67|A0A7D6VZ67_9CLOTPenicillin-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18455PE=3SV=1	tr|A0A7D6VZ67|A0A7D6VZ67_9CLOTPenicillin-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18455PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.811279296875	2	518.277106	1034.53966	0.035602	1.8452E-05	1.3686	0.00070934	1.4042	0.00072779	518.7797936496133	88.671	0.48805	86.54	86.214	86.702	-2.1309					16	9	2	0	0	0	0.026688	1	5392	5392		25.574	0	1	26114			33410	35351	27518	27543	36769	36769					0.023771525806068894
LNQEDAVHF	9	Unmodified	_LNQEDAVHF_					0	0	0		CPOX|p.D343Tfs*19|1|0.07|ENSG00000080819|chr3:98585589-98585589|G/-|frameshift_variant;ENSG00000080819|ENST00000647941|CPOX	CPOX|p.D343Tfs*19|1|0.07|ENSG00000080819|chr3:98585589-98585589|G/-|frameshift_variant	CPOX|p.D343Tfs*19|1|0.07|ENSG00000080819|chr3:98585589-98585589|G/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3421020507812	2	536.756538	1071.49852	-0.57462	-0.00030843	-1.8525	-0.00099435	-2.4271	-0.0013028	536.7575694544948	39.516	0.29763	39.516	39.332	39.63	0					11	6	3	0	0	0	0.027462	1	2344	2344		31.53	7.3271	1	93071			33411	676	27519	27544	36770	36770					-0.03436608458855517
LNQFVDEM	8	Unmodified	_LNQFVDEM_					0	0	0			REV__nc|ENSG00000214711|A8MX76-2|CAPN14	REV__nc|ENSG00000214711|A8MX76-2|CAPN14	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.76934814453125	2	498.228768	994.442982	-0.95624	-0.00047642	1.2311	0.00061335	0.27482	0.00013692	498.2294769399502	36.465	0.17841	36.465	36.397	36.575	0					5	3	2	0	0	0	0.028476	1	1924	1924		19.36	0	1	30367	+		33412	23295	27520	27545	36771	36771					-0.05446157970823151
LNQHRQSL	8	Unmodified	_LNQHRQSL_					0	0	0			REV__ENST00000389044.8_1_2:230723490-230723628:-|nuORF	REV__ENST00000389044.8_1_2:230723490-230723628:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.2336120605469	2	498.27269	994.530826	0.55294	0.00027551	2.7157	0.0013532	3.2687	0.0016287	498.2739649425995	110.68	0.73609	109.08	108.86	109.59	-1.6011					21	13	2	0	0	0	0.028476	1	10241	10241		60.972	0	1	30771	+		33413	25224	27521	27546	36772	36772					0.03334223734805164
LNQIELQN	8	Unmodified	_LNQIELQN_					0	0	0			REV__PDPR|p.H811Mfs*23|1|0.02|ENSG00000090857|chr16:70156669-70156670|-/ATGGATTT|frameshift_variant	REV__PDPR|p.H811Mfs*23|1|0.02|ENSG00000090857|chr16:70156669-70156670|-/ATGGATTT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.760009765625	2	486.261456	970.50836	0.090921	4.4211E-05	-2.03	-0.00098712	-1.9391	-0.00094291	486.26039293344684	62.633	1.3834	62.633	61.953	63.337	0					59	33	3	0	0	0	0.028476	1	5590	5590		63.306	7.8021	1	6701100	+		33414	17234	27522	27547	36773	36773					0.02192579546522211
LNQKATLN	8	Unmodified	_LNQKATLN_					0	0	0		chr14:103574170-103587279|88|25.68|0.0|21.29|+|0|COA8,None|2	chr14:103574170-103587279|88|25.68|0.0|21.29|+|0|COA8,None|2	chr14:103574170-103587279|88|25.68|0.0|21.29|+|0|COA8,None|2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.2643737792969	2	451.258717	900.50288	0.55386	0.00024993	-1.4208	-0.00064116	-0.86697	-0.00039123	451.25813326552685	66.736	0.73613	63.245	62.805	63.541	-3.4902					24	14	2	0	0	0	0.028476	1	4816	4816		21.96	11.094	1	71206			33415	341	27523	27548	36774	36774					0.04864900754705559
LNQKGKPI	8	Unmodified	_LNQKGKPI_					0	0	0		tr|A0A553SJQ8|A0A553SJQ8_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_17450PE=4SV=1	tr|A0A553SJQ8|A0A553SJQ8_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_17450PE=4SV=1	tr|A0A553SJQ8|A0A553SJQ8_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_17450PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	449.7595520019531	2	449.279452	896.544351	-0.022555	-1.0134E-05	-0.30507	-0.00013706	-0.32763	-0.0001472	449.2792109629812	74.072	1.6302	70.841	70.095	71.726	-3.2308					71	33	3	0	0	0	0.028476	1	5687	5687		31.955	13.63	1	596430			33416	33532	27524	27549	36775	36775					0.09194081514044683
LNQLYWYLT	9	Unmodified	_LNQLYWYLT_					0	0	0			REV__nc|ENSG00000276597|A0A5A6|TRBV11-3	REV__nc|ENSG00000276597|A0A5A6|TRBV11-3	MULTI-MSMS	OvCa9_classI_Rep2	2	607.3145751953125	2	607.316232	1212.61791	-0.66897	-0.00040628	-2.8949	-0.0017581	-3.5638	-0.0021644	607.3143684506753	105.84	1.7433	105.4	104.95	106.69	-0.43642					110	34	4	0	0	0	0.40818	1	9840	9840		44.117	8.4985	1	513880	+		33417	29194	27525	27550	36776	36776					0.020105851658399843
LNQQRYEF	8	Unmodified	_LNQQRYEF_					0	0	0			REV__ENSG00000146352|ENST00000275162|CLVS2	REV__ENSG00000146352|ENST00000275162|CLVS2	MULTI-MSMS	OvCa99_classI_Rep5	1	549.2711791992188	2	549.272355	1096.53016	1.3305	0.00073082	-3.5752	-0.0019637	-2.2446	-0.0012329	549.270246356825	147.9	0.77646	147.9	147.6	148.37	0					30	15	3	0	0	0	0.64026	1	17317	17317		55.504	0.72789	1	204750	+		33418	20009	27526	27551	36777	36777					-0.01424615704900134
LNQSISEKETL	11	Unmodified	_LNQSISEKETL_					0	0	0		TRIP11|p.N1845Tfs*4|1|0.37|ENSG00000100815|chr14:91974669-91974669|G/-|frameshift_variant;nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11	TRIP11|p.N1845Tfs*4|1|0.37|ENSG00000100815|chr14:91974669-91974669|G/-|frameshift_variant	TRIP11|p.N1845Tfs*4|1|0.37|ENSG00000100815|chr14:91974669-91974669|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	631.3392333984375	2	631.33535	1260.65615	1.0422	0.00065797	0.69443	0.00043842	1.7366	0.0010964	631.3358609872256	67.254	1.3749	63.764	63.59	64.965	-3.4902					72	27	4	0	0	0	0.51772	1	4925	4925		21.686	0	1	1166500			33419	2108	27527	27552	36778	36778					0.036244262898890156
LNQSLSLKP	9	Unmodified	_LNQSLSLKP_					0	0	0		nc|ENSG00000163104|Q9H4L7-3|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	MULTI-MSMS	OvCa9_classI_Rep2	2	500.2958068847656	2	500.295299	998.576045	0.69928	0.00034985	-1.1331	-0.00056686	-0.43378	-0.00021702	500.2946639686594	87.294	1.2874	85.863	85.438	86.726	-1.4311					65	24	4	0	0	0	0.34132	1	7615	7615		58.23	1.5089	1	359970			33420	6266	27528	27553	36779	36779					0.07670029477344542
LNQVGDKIEA	10	Unmodified	_LNQVGDKIEA_					0	0	0			REV__tr|A0A553SGP4|A0A553SGP4_NIACIPTSglucosetransportersubunitIICBAOS=NialliacirculansOX=1397GN=CEQ21_11270PE=4SV=1	REV__tr|A0A553SGP4|A0A553SGP4_NIACIPTSglucosetransportersubunitIICBAOS=NialliacirculansOX=1397GN=CEQ21_11270PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.312744140625	2	543.793121	1085.57169	-2.797	-0.001521	-1.141	-0.00062047	-3.9381	-0.0021415	544.293608574338	103.94	0.2556	103.94	103.85	104.11	0					6	5	2	0	0	0	0.026891	1	11652	11652		31.53	1.2121	1	255770	+		33421	29726	27529	27554	36780	36780					0.032325202637593975
LNQVSRRL	8	Unmodified	_LNQVSRRL_					0	0	0			REV__CON__Q6IFX2	REV__CON__Q6IFX2	MULTI-MSMS	OvCa99_classI_Rep5	1	493.2986755371094	2	493.298707	984.582862	-1.1018	-0.00054351	0.89607	0.00044203	-0.20573	-0.00010148	493.2990081425909	27.949	0.44901	27.949	27.791	28.24	0					19	8	4	0	0	0	0.73494	1	872	872		34.173	2.2177	1	167460	+	+	33422	16217	27530	27555	36781	36781					0.08995387148559075
LNQVSRRL	8	Unmodified	_LNQVSRRL_					0	0	0			REV__CON__Q6IFX2	REV__CON__Q6IFX2	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	493.298707	984.582862	-1.1018	-0.00054351	0.89607	0.00044203	-0.20573	-0.00010148	493.2990081425909	27.949	0.44901	27.949	27.791	28.24	0	0	0	NaN	34.173	19	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167460	+	+	33423	16217	27530	27555							0.08995387148559075
LNREESILK	9	Unmodified	_LNREESILK_					0	0	0		nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2;nc|ENSG00000169398|Q05397-4|PTK2;nc|ENSG00000169398|Q05397-3|PTK2;nc|ENSG00000169398|Q05397-2|PTK2	nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397-2|PTK2	nc|ENSG00000169398|Q05397-2|PTK2	MULTI-MSMS	OvCa99_classI_Rep5	1	551.3154296875	2	551.316763	1100.61897	-0.35914	-0.000198	-0.14011	-7.7247E-05	-0.49925	-0.00027524	551.3167558435771	30.128	0.99575	30.128	29.735	30.731	0					62	19	5	0	0	0	0.094616	1	1128	1128		98.629	8.2596	1	1744400			33424	7005;15172	27531	27556	36782	36782					0.07268799534745085
LNREYPAK	8	Unmodified	_LNREYPAK_					0	0	0			REV__tr|A0A7D6ZYH4|A0A7D6ZYH4_9CLOTSpermidine/putrescineimportATP-bindingproteinPotAOS=ClostridiumintestinaleOX=36845GN=potAPE=3SV=1	REV__tr|A0A7D6ZYH4|A0A7D6ZYH4_9CLOTSpermidine/putrescineimportATP-bindingproteinPotAOS=ClostridiumintestinaleOX=36845GN=potAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.76214599609375	2	495.771991	989.529429	0.10391	5.1517E-05	4.1317	0.0020484	4.2356	0.0020999	495.77359092978776	75.303	0.29032	72.072	71.915	72.205	-3.2308					8	5	2	0	0	0	0.028476	1	5926	5926		30.504	9.5567	1	28601	+		33425	32373	27532	27557	36783	36783					0.034245896460333825
LNRGFMMV	8	Unmodified	_LNRGFMMV_					0	0	0			REV__nc|ENSG00000068784|Q8N5C6-2|SRBD1	REV__nc|ENSG00000068784|Q8N5C6-2|SRBD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.2930908203125	2	484.24624	966.477928	-1.4201	-0.00068766	-0.52499	-0.00025422	-1.945	-0.00094188	484.245840515167	95.521	0.34986	93.053	92.861	93.211	-2.4685					10	6	2	0	0	0	0.028476	1	8384	8384		29.842	0	1	16138	+		33426	16858	27533	27558	36784	36784					-0.006651936438629491
LNRGHPLAAR	10	Unmodified	_LNRGHPLAAR_					0	0	0			REV__ENST00000565468.5_1_7:141137492-141170384:+|nuORF	REV__ENST00000565468.5_1_7:141137492-141170384:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	552.8238525390625	2	552.822881	1103.63121	0.65495	0.00036207	1.7906	0.0009899	2.4456	0.001352	552.8236979946989	127.27	1.4282	126.2	125.91	127.34	-1.0715					71	27	4	0	0	0	0.53885	1	9985	9985		49.442	4.4193	1	197430	+		33427	27684	27534	27559	36785	36785					0.08353880788445167
LNRHRRRRERE	11	Unmodified	_LNRHRRRRERE_					0	0	0			REV__ENSG00000159166|ENST00000391967|LAD1	REV__ENSG00000159166|ENST00000391967|LAD1	MULTI-MSMS	OvCa9_classI_Rep3	3	526.6345825195312	3	526.636717	1576.88832	0.89518	0.00047143	-4.2119	-0.0022181	-3.3167	-0.0017467	526.6344674636681	62.939	1.7933	59.905	59.561	61.354	-3.0339					97	35	4	0	0	0	0.7257	1	2325	2325		6.3209	0.31984	1	164120	+		33428	20601	27535	27560	36786	36786					0.12295170994457294
LNRKIVQV	8	Unmodified	_LNRKIVQV_					0	0	0		ENST00000485667.1_1_3:184073137-184079267:-|nuORF;nc|ENSG00000114859|P51788-4|CLCN2;CLCN2|p.R858Hfs*2|1|0.13|ENSG00000114859|chr3:184346696-184346730|GGTCTCCGTGTCACTGCTGCTGGTGGCACTGTCTC/-|frameshift_variant;nc|ENSG00000114859|P51788-5|CLCN2;nc|ENSG00000114859|P51788-3|CLCN2;ENSG00000114859|ENST00000265593|CLCN2	ENST00000485667.1_1_3:184073137-184079267:-|nuORF	ENST00000485667.1_1_3:184073137-184079267:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	485.31524658203125	2	485.313826	968.613099	0.13308	6.4584E-05	-0.89036	-0.0004321	-0.75728	-0.00036752	485.3134395319715	62.422	2.2946	62.422	62.122	64.417	0					138	56	5	0	0	0	0.39692	3	5537	5537;5614;5653		88.643	11.796	1	62495000			33429	582	27536	27561	36787;36788;36789	36787					0.12753745813768091
LNRMAPVL	8	Unmodified	_LNRMAPVL_					0	0	0		nc|ENSG00000132313|Q9NZE8-2|MRPL35;ENSG00000132313|ENST00000337109|MRPL35	nc|ENSG00000132313|Q9NZE8-2|MRPL35	nc|ENSG00000132313|Q9NZE8-2|MRPL35	MULTI-SECPEP	OvCa9_classI_Rep2	2	456.7970886230469	2	457.26803	912.521507	0.27245	0.00012458	-3.3647	-0.0015386	-3.0922	-0.001414	457.2661512992606	104.25	1.5339	103.67	103.28	104.81	-0.57639					47	30	3	0	0	0	0.028476	1	9606	9606		68.485	10.673	1	43157			33430	4125	27537	27562	36790	36790					0.061747391249241446
LNRMAPVL	8	Unmodified	_LNRMAPVL_					0	0	0		nc|ENSG00000132313|Q9NZE8-2|MRPL35;ENSG00000132313|ENST00000337109|MRPL35	nc|ENSG00000132313|Q9NZE8-2|MRPL35	nc|ENSG00000132313|Q9NZE8-2|MRPL35	MULTI-SECPEP	OvCa9_classI_Rep3	3	456.7982482910156	2	457.26803	912.521507	0.41158	0.0001882	-3.5541	-0.0016252	-3.1425	-0.001437	457.2661656711873	105.17	1.5619	103.82	103.36	104.93	-1.3482					49	29	3	0	0	0	0.028476	1	7319	7319		92.191	8.9034	1	65006			33431	4125	27537	27562	36791	36791					0.061747391249241446
LNRPNPLLAL	10	Unmodified	_LNRPNPLLAL_					0	0	0		ENSG00000177666|ENST00000336615|PNPLA2	ENSG00000177666|ENST00000336615|PNPLA2	ENSG00000177666|ENST00000336615|PNPLA2	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.8485107421875	2	560.84549	1119.67643	4.3777	0.0024552	2.3002	0.00129	6.6779	0.0037453	560.8466340657677	134.1	1.1382	132.57	132.29	133.43	-1.5257					51	22	3	0	0	0	0.59703	1	12962	12962		42.396	1.8235	1	72313			33432	7703	27538	27563	36792	36792					0.12137686530991232
LNRRLKMEN	9	Unmodified	_LNRRLKMEN_					0	0	0			REV__ENST00000483186.1_1_9:77435204-77442805:-|nuORF	REV__ENST00000483186.1_1_9:77435204-77442805:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.8101196289062	2	587.329682	1172.64481	1.265	0.00074298	-2.2996	-0.0013506	-1.0345	-0.00060762	587.3272391565304	111.83	0.68734	111.83	111.42	112.11	0					19	14	2	0	0	0	0.027462	1	12721	12721		60.118	24.5	1	153970	+		33433	18426	27539	27564	36793	36793					0.06539370505402076
LNRRYNIL	8	Unmodified	_LNRRYNIL_					0	0	0			REV__MLT1F2_dup2599|chr7:93809692-93809986:+|1.1013524509762949|0.036508973437587|4.91|377.0|7|2|sense	REV__MLT1F2_dup2599|chr7:93809692-93809986:+|1.1013524509762949|0.036508973437587|4.91|377.0|7|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.2919921875	2	531.314358	1060.61416	1.6523	0.00087789	1.8613	0.00098894	3.5136	0.0018668	531.3166720711187	87.541	0.33392	87.541	87.42	87.754	0					10	7	2	0	0	0	0.028476	1	9280	9280		20.482	8.275	1	231270	+		33434	28670	27540	27565	36794	36794					0.08627960182661809
LNRRYNIL	8	Unmodified	_LNRRYNIL_					0	0	0			REV__MLT1F2_dup2599|chr7:93809692-93809986:+|1.1013524509762949|0.036508973437587|4.91|377.0|7|2|sense	REV__MLT1F2_dup2599|chr7:93809692-93809986:+|1.1013524509762949|0.036508973437587|4.91|377.0|7|2|sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	531.314358	1060.61416	0.88623	0.00047087	-2.7994	-0.0014874	-1.9132	-0.0010165	531.3127635358068	89.117	0.39497	87.75	87.527	87.922	-1.3676	0.080185	-0.0041688	NaN	35.201	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18668	+		33435	28670	27540	27565							0.08627960182661809
LNRRYNIL	8	Unmodified	_LNRRYNIL_					0	0	0			REV__MLT1F2_dup2599|chr7:93809692-93809986:+|1.1013524509762949|0.036508973437587|4.91|377.0|7|2|sense	REV__MLT1F2_dup2599|chr7:93809692-93809986:+|1.1013524509762949|0.036508973437587|4.91|377.0|7|2|sense	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	531.314358	1060.61416	-0.65986	-0.0003506	0.17187	9.1315E-05	-0.488	-0.00025928	531.3145628783394	90.293	0.50768	87.718	87.551	88.058	-2.575	0.048511	-0.0010114	NaN	35.201	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18045	+		33436	28670	27540	27565							0.08627960182661809
LNRSARDGL	9	Unmodified	_LNRSARDGL_					0	0	0			REV__TUBGCP5|p.S675Lfs*14|1|0.04|ENSG00000275835|chr15:23010066-23010067|-/CTTGCTCTGTCGCCCAGGCTGGAGTGCAG|frameshift_variant	REV__TUBGCP5|p.S675Lfs*14|1|0.04|ENSG00000275835|chr15:23010066-23010067|-/CTTGCTCTGTCGCCCAGGCTGGAGTGCAG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	501.2790832519531	2	501.277972	1000.54139	1.2538	0.00062852	1.3292	0.00066632	2.5831	0.0012948	501.2785872373174	89.561	2.1397	88.259	87.642	89.781	-1.302					116	42	5	0	0	0	0.24951	1	7878	7878		68.787	1.2932	1	522140	+		33437	32738	27541	27566	36795	36795					0.041142063892380065
LNRSRSFA	8	Unmodified	_LNRSRSFA_					0	0	0			REV__nc|ENSG00000182903|Q8TF20|ZNF721	REV__nc|ENSG00000182903|Q8TF20|ZNF721	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.8876647949219	2	475.761958	949.509363	2.4591	0.00117	-3.9321	-0.0018708	-1.473	-0.0007008	475.7599377023852	86.216	2.7078	86.216	85.087	87.794	0					121	65	3	0	0	0	0.028476	1	9032	9032		30.504	6.3009	1	589110	+		33438	22326	27542	27567	36796	36796					0.03258838706096867
LNRTRAARPL	10	Unmodified	_LNRTRAARPL_					0	0	0			REV__ENST00000554578.5_1_12:57637331-57638104:-|nuORF	REV__ENST00000554578.5_1_12:57637331-57638104:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3574829101562	2	584.357088	1166.69962	-0.5033	-0.0002941	-0.35635	-0.00020823	-0.85964	-0.00050234	584.3567763295431	142.42	4.015	140.98	138.81	142.83	-1.4427					242	77	4	0	0	0	0.762	1	14059	14059		23.523	1.5628	1	214670	+		33439	27529	27543	27568	36797	36797					0.122941253683166
LNRVLIFE	8	Unmodified	_LNRVLIFE_					0	0	0			REV__nc|ENSG00000290988|Q8N8C0|ZNF781	REV__nc|ENSG00000290988|Q8N8C0|ZNF781	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.2286682128906	2	502.300384	1002.58622	-0.63796	-0.00032045	-2.8868	-0.00145	-3.5247	-0.0017705	502.29881272449205	37.919	0.99817	37.919	37.621	38.619	0					35	21	2	0	0	0	0.028476	1	2128	2128		50.025	7.6284	1	1353300	+		33440	29219	27544	27569	36798	36798					0.08502637202582264
LNRWPLVPR	9	Unmodified	_LNRWPLVPR_					0	0	0			REV__ENST00000531473.5_1_8:144699171-144699615:-|nuORF	REV__ENST00000531473.5_1_8:144699171-144699615:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	576.7694091796875	2	575.845825	1149.6771	-3.7719	-0.002172	-0.96123	-0.00055352	-4.7331	-0.0027256	575.8450634603691	149.56	1.0526	149.33	148.97	150.02	-0.22696					36	20	2	0	0	0	0.027462	1	15197	15197		29.15	1.2673	1	26175	+		33441	27216	27545	27570	36799	36799					0.1082452597070187
LNRYLCLAVL	10	Unmodified	_LNRYLCLAVL_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1	nc|ENSG00000196218|P21817-3|RYR1	nc|ENSG00000196218|P21817-3|RYR1	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3428344726562	2	589.341726	1176.6689	-2.1868	-0.0012888	4.2276	0.0024915	2.0407	0.0012027	589.3441619466173	148.26	4.549	146.82	145.53	150.08	-1.435					304	95	6	0	0	0	0.76627	1	14672	14672		23.042	2.0956	1	385010			33442	8578	27546	27571	36800	36800					0.08763210939059718
LNRYLKVV	8	Unmodified	_LNRYLKVV_					0	0	0		ENSG00000162881|ENST00000378661|OXER1;OXER1|p.F270Lfs*90|1|0.19|ENSG00000162881|chr2:42763372-42763373|-/G|frameshift_variant;OXER1|p.L269Pfs*99|1|0.19|ENSG00000162881|chr2:42763374-42763375|-/CAGTGCCCCCTGGGATGGGGCTGTG|frameshift_variant	ENSG00000162881|ENST00000378661|OXER1	ENSG00000162881|ENST00000378661|OXER1	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.8148498535156	2	502.816202	1003.61785	-4.7582	-0.0023925	0.34644	0.0001742	-4.4117	-0.0022183	502.8162748013114	154.42	1.5526	152.97	152.64	154.2	-1.4516					113	39	4	0	0	0	0.74971	1	15263	15263		26.796	4.8362	1	1254800			33443	6243	27547	27572	36801	36801					0.11618629956524273
LNSAFRVK	8	Unmodified	_LNSAFRVK_					0	0	0			REV__tr|A0A553SIS3|A0A553SIS3_NIACIUTP--glucose-1-phosphateuridylyltransferaseOS=NialliacirculansOX=1397GN=galUPE=3SV=1	REV__tr|A0A553SIS3|A0A553SIS3_NIACIUTP--glucose-1-phosphateuridylyltransferaseOS=NialliacirculansOX=1397GN=galUPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	467.7906188964844	2	467.777077	933.5396	-0.85989	-0.00040224	2.6117	0.0012217	1.7518	0.00081945	467.7786428953184	45.002	0.61145	41.964	41.464	42.075	-3.0385					19	11	2	0	0	0	0.028476	1	2270	2270		26.693	0	1	28129	+		33444	29922	27548	27573	36802	36802					0.07017197371283146
LNSDTFSLL	9	Unmodified	_LNSDTFSLL_					0	0	0		ENSG00000186105|ENST00000334994|LRRC70	ENSG00000186105|ENST00000334994|LRRC70	ENSG00000186105|ENST00000334994|LRRC70	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.3234558105469	2	505.263665	1008.51278	-0.92547	-0.0004676	-1.1768	-0.00059458	-2.1022	-0.0010622	505.7661858883987	104.8	0.3436	104.22	104.07	104.41	-0.57639					8	6	2	0	0	0	0.027455	1	9717	9717		42.396	0	1	9946			33445	8313	27549	27574	36803	36803					0.008860439694331035
LNSFLKLLE	9	Unmodified	_LNSFLKLLE_					0	0	0		ENST00000540006.5_1_13:111293886-111296904:-|nuORF	ENST00000540006.5_1_13:111293886-111296904:-|nuORF	ENST00000540006.5_1_13:111293886-111296904:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	539.3240966796875	2	538.82115	1075.62775	0.98933	0.00053307	1.023	0.00055119	2.0123	0.0010843	539.3232025782999	156.41	3.6435	156.41	155.73	159.38	0					185	73	4	0	0	0	0.37135	1	18477	18477		54.776	1.4249	1	206920			33446	13445	27550	27575	36804	36804					0.0929577317122039
LNSINWNSK	9	Unmodified	_LNSINWNSK_					0	0	0			REV__tr|A0A7D6VPU8|A0A7D6VPU8_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20450PE=4SV=1	REV__tr|A0A7D6VPU8|A0A7D6VPU8_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20450PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	538.2765502929688	2	538.28018	1074.54581	2.2113	0.0011903	-2.5929	-0.0013957	-0.38161	-0.00020542	538.2785131935833	137.37	0.75874	137.37	137.06	137.82	0					28	15	3	0	0	0	0.2422	1	16023	16023		69.628	7.5202	1	92360	+		33447	31279	27551	27576	36805	36805					0.011516708121462216
LNSINWNSK	9	Unmodified	_LNSINWNSK_					0	0	0			REV__tr|A0A7D6VPU8|A0A7D6VPU8_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20450PE=4SV=1	REV__tr|A0A7D6VPU8|A0A7D6VPU8_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20450PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	538.28018	1074.54581	2.2113	0.0011903	-2.5929	-0.0013957	-0.38161	-0.00020542	538.2785131935833	137.37	0.75874	137.37	137.06	137.82	0	0	0	NaN	69.628	28	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92360	+		33448	31279	27551	27576							0.011516708121462216
LNSKAVKDL	9	Unmodified	_LNSKAVKDL_					0	0	0		ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	MULTI-MSMS	OvCa9_classI_Rep3	3	494.2956848144531	2	494.295299	986.576045	-1.1483	-0.00056758	0.076684	3.7905E-05	-1.0716	-0.00052968	494.2953202394874	91.548	1.6915	89.524	88.624	90.315	-2.0241					95	33	4	0	0	0	0.1944	2	5772	5764;5772		77.318	3.2864	1	2048800			33449	5893	27552	27577	36806;36807	36807					0.08222029477337855
LNSLLPALYH	10	Unmodified	_LNSLLPALYH_					0	0	0			REV__ENST00000530074.1_1_8:145192726-145193642:+|nuORF	REV__ENST00000530074.1_1_8:145192726-145193642:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	570.8207397460938	2	570.824224	1139.63389	-1.1076	-0.00063223	-3.6058	-0.0020583	-4.7133	-0.0026905	570.8223947094398	83.611	2.5243	82.012	81.415	83.939	-1.5988					150	50	5	0	0	0	0.66721	1	7163	7163		34.173	1.3601	1	939080	+		33450	23405	27553	27578	36808	36808					0.06966291402750358
LNSLSGDITIL	11	Unmodified	_LNSLSGDITIL_					0	0	0		nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;ENSG00000262576|ENST00000571252|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	MULTI-MSMS	OvCa99_classI_Rep5	1	573.328125	2	573.324254	1144.63395	1.6215	0.00092964	3.6923	0.0021169	5.3138	0.0030465	573.3262541520868	120.08	0.57504	120.08	119.65	120.23	0					33	12	4	0	0	0	0.20195	1	13786	13786		79.713	4.6693	1	1256100			33451	9509	27554	27579	36809	36809					0.06742246612111558
LNSRHKIS	8	Unmodified	_LNSRHKIS_					0	0	0		tr|A0A7D6VSP3|A0A7D6VSP3_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_17540PE=4SV=1	tr|A0A7D6VSP3|A0A7D6VSP3_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_17540PE=4SV=1	tr|A0A7D6VSP3|A0A7D6VSP3_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_17540PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.77850341796875	2	477.777608	953.540663	-0.82611	-0.0003947	0.0037772	1.8047E-06	-0.82233	-0.00039289	477.7776089014007	43.823	3.0314	40.816	40.483	43.515	-3.0074					146	58	4	0	0	0	0.59148	1	2125	2125		65.803	0	1	12741000			33452	35045	27555	27580	36810	36810					0.06203411740193587
LNSRLEIY	8	Unmodified	_LNSRLEIY_					0	0	0		L1MEf_dup11696|chr22:19793158-19794011:+|1.3999327460046636|0.4439510689387073|1.66|429.0|21|3|sense	L1MEf_dup11696|chr22:19793158-19794011:+|1.3999327460046636|0.4439510689387073|1.66|429.0|21|3|sense	L1MEf_dup11696|chr22:19793158-19794011:+|1.3999327460046636|0.4439510689387073|1.66|429.0|21|3|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	504.2796630859375	2	504.279649	1006.54475	-1.6431	-0.00082856	1.1851	0.0005976	-0.458	-0.00023096	504.28013580529404	50.546	2.428	47.752	47.331	49.759	-2.794					113	47	4	0	0	0	0.61436	1	3262	3262		60.972	2.19	1	790080			33453	14627	27556	27581	36811	36811					0.041734564432204024
LNSSLRYLDV	10	Unmodified	_LNSSLRYLDV_					0	0	0		ENST00000522329.1_1_3:169514534-169514660:-|nuORF;ENST00000602774.1_1_3:169514531-169514660:-|nuORF;MECOM-LRRC34|5|fusion;MECOM-LRRC34|2|fusion;ENST00000522080.5_1_3:169513982-169530312:-|nuORF;MECOM-LRRC34|4|fusion;MECOM-LRRC34|1|fusion;MECOM-LRRC34|6|fusion;MECOM-LRRC34|3|fusion;nc|ENSG00000171757|Q8IZ02-3|LRRC34;ENSG00000171757|ENST00000446859|LRRC34	ENST00000522329.1_1_3:169514534-169514660:-|nuORF	ENST00000522329.1_1_3:169514534-169514660:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.7911987304688	2	590.322045	1178.62954	0.48454	0.00028604	-1.1192	-0.00066067	-0.63463	-0.00037463	590.8222139547886	114.29	0.68149	114.29	113.88	114.56	0					19	14	2	0	0	0	0.026849	1	13041	13041		32.812	0	1	138950			33454	7230	27557	27582	36812	36812					0.04736782189183941
LNSSTVLTRV	10	Unmodified	_LNSSTVLTRV_					0	0	0			REV__ENST00000393910.5_1_17:39983688-39992209:-|nuORF	REV__ENST00000393910.5_1_17:39983688-39992209:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.3173828125	2	545.316763	1088.61897	-0.51373	-0.00028014	0.45215	0.00024656	-0.061581	-3.3581E-05	545.3169196404446	142.63	4.7541	141.19	139.73	144.49	-1.4427					172	91	2	0	0	0	0.65849	1	14112	14112		35.152	0.97948	1	155190	+		33455	25288	27558	27583	36813	36813					0.07820799534761136
LNSTGELEF	9	Unmodified	_LNSTGELEF_					0	0	0		nc|ENSG00000179299|Q8NE18-2|NSUN7;ENSG00000179299|ENST00000381782|NSUN7;nc|ENSG00000179299|Q8NE18-3|NSUN7;ENST00000473399.5_1_4:40752710-40776973:+|nuORF	nc|ENSG00000179299|Q8NE18-2|NSUN7	nc|ENSG00000179299|Q8NE18-2|NSUN7	MULTI-SECPEP	OvCa9_classI_Rep2	2	504.2796936035156	2	505.245472	1008.47639	-1.4829	-0.00074922	3.583	0.0018103	2.1001	0.0010611	505.2466203486067	50.016	1.1401	47.222	46.933	48.074	-2.794					53	22	4	0	0	0	0.027185	1	3281	3281		93.195	8.2799	1	48580			33456	7814	27559	27584	36814	36814					-0.027508329272677656
LNTAIRYLWT	10	Unmodified	_LNTAIRYLWT_					0	0	0			REV__tr|A0A553SH67|A0A553SH67_NIACIRNApolymerasesigmafactorSigWOS=NialliacirculansOX=1397GN=sigWPE=3SV=1	REV__tr|A0A553SH67|A0A553SH67_NIACIRNApolymerasesigmafactorSigWOS=NialliacirculansOX=1397GN=sigWPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	625.045166015625	2	625.84823	1249.68191	-0.91283	-0.00057129	2.4364	0.0015248	1.5235	0.00095351	626.8516571868989	27.054	0.2	27.054	26.942	27.142	0					8	3	3	0	0	0	0.027001	1	754	754		28.081	2.5074	1	18519	+		33457	29776	27560	27585	36815	36815					0.06705365322795842
LNTFFLAVLL	10	Unmodified	_LNTFFLAVLL_					0	0	0		ENST00000398117.1_1_18:60986227-60986365:-|nuORF	ENST00000398117.1_1_18:60986227-60986365:-|nuORF	ENST00000398117.1_1_18:60986227-60986365:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8424072265625	2	575.847167	1149.67978	-4.018	-0.0023138	-2.943	-0.0016947	-6.9609	-0.0040084	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.5675	2	12120	12120;12312		45.972	8.1607	1	445630			33458	11367	27561	27586	36816;36817	36816					0.11092936585009738
LNTFIADGAQ	10	Unmodified	_LNTFIADGAQ_					0	0	0			REV__tr|A0A7D6VUH7|A0A7D6VUH7_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_17505PE=4SV=1	REV__tr|A0A7D6VUH7|A0A7D6VUH7_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_17505PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.808837890625	2	525.266739	1048.51892	1.0228	0.00053723	4.4873	0.002357	5.5101	0.0028943	525.2696233991524	119.3	0.99234	119.3	118.53	119.52	0					38	21	4	0	0	0	0.026681	1	13654	13654		36.447	2.5251	1	333680	+		33459	31679	27562	27587	36818	36818					-0.0033943779906167038
LNTHSVSP	8	Unmodified	_LNTHSVSP_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-SECPEP	OvCa9_classI_Rep4_	4	427.2794494628906	2	427.721967	853.429381	0.020446	8.7451E-06	-0.4811	-0.00020578	-0.46066	-0.00019703	427.7214670296697	101.63	0.71011	99.365	99.16	99.87	-2.2665					20	13	2	0	0	0	0.028476	1	9149	9149		21.96	2.5999	1	18382			33460	5429	27563	27588	36819	36819					-0.0031964768776333585
LNTKHTFV	8	Unmodified	_LNTKHTFV_					0	0	0			REV__nc|ENSG00000127081|Q5JVG2-2|ZNF484	REV__nc|ENSG00000127081|Q5JVG2-2|ZNF484	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.80010986328125	2	480.269084	958.523616	-0.54843	-0.00026339	-0.0090588	-4.3507E-06	-0.55749	-0.00026774	480.27051614704874	39.698	0.33641	39.698	39.42	39.756	0					10	7	2	0	0	0	0.028476	1	2320	2320		79.451	0	1	50731	+		33461	18805	27564	27589	36820	36820					0.04269491134380132
LNTLDDLSER	10	Unmodified	_LNTLDDLSER_					0	0	0			REV__ENST00000478361.6_1_10:94240585-94297282:-|nuORF	REV__ENST00000478361.6_1_10:94240585-94297282:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	588.3038330078125	2	588.298767	1174.58298	0.11239	6.6121E-05	3.9521	0.002325	4.0645	0.0023911	588.3010730867122	62.922	0.83567	62.922	62.541	63.376	0					49	20	4	0	0	0	0.47142	1	5618	5618		58.23	7.0372	1	2887800	+		33462	18472	27565	27590	36821	36821					0.002672975672339817
LNTLVRGQK	9	Unmodified	_LNTLVRGQK_					0	0	0		tr|A0A7D7ABU9|A0A7D7ABU9_9CLOTV-typeATPsynthasebetachainOS=ClostridiumintestinaleOX=36845GN=atpBPE=3SV=1	tr|A0A7D7ABU9|A0A7D7ABU9_9CLOTV-typeATPsynthasebetachainOS=ClostridiumintestinaleOX=36845GN=atpBPE=3SV=1	tr|A0A7D7ABU9|A0A7D7ABU9_9CLOTV-typeATPsynthasebetachainOS=ClostridiumintestinaleOX=36845GN=atpBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	514.8146362304688	2	514.81419	1027.61383	2.5746	0.0013254	-2.6896	-0.0013847	-0.11509	-5.9251E-05	514.8126670332618	27.295	1.0989	24.585	24.394	25.493	-2.7097					55	24	4	0	0	0	0.55011	1	468	468		37.812	0.30334	1	264850			33463	36219	27566	27591	36822	36822					0.10112540462819197
LNTNIGKNI	9	Unmodified	_LNTNIGKNI_					0	0	0			REV__tr|A0A7D6VZM6|A0A7D6VZM6_9CLOTSulfiteexporterTauE/SafEfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20830PE=4SV=1	REV__tr|A0A7D6VZM6|A0A7D6VZM6_9CLOTSulfiteexporterTauE/SafEfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20830PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.77459716796875	2	493.785099	985.555644	-0.53033	-0.00026187	-0.068437	-3.3793E-05	-0.59876	-0.00029566	493.7848712795568	44.728	0.718	44.728	44.35	45.068	0					31	15	3	0	0	0	0.027441	1	3046	3046		49.442	13.823	1	729090	+		33464	31841	27567	27592	36823	36823					0.06228858817530636
LNTNVPNLI	9	Unmodified	_LNTNVPNLI_					0	0	0			REV__ENST00000522846.1_1_8:29048390-29120551:-|nuORF	REV__ENST00000522846.1_1_8:29048390-29120551:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	499.2882080078125	2	499.287474	996.560395	-1.1559	-0.0005771	0.43608	0.00021773	-0.71978	-0.00035938	499.2876340721799	91.351	1.3453	89.327	88.879	90.225	-2.0241					77	26	4	0	0	0	0.16524	1	5723	5723		82.305	0.064519	1	1681400	+		33465	22963	27568	27593	36824	36824					0.061977429602734446
LNTTIKRV	8	Unmodified	_LNTTIKRV_					0	0	0		tr|A0A7D6ZII0|A0A7D6ZII0_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07105PE=4SV=1	tr|A0A7D6ZII0|A0A7D6ZII0_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07105PE=4SV=1	tr|A0A7D6ZII0|A0A7D6ZII0_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07105PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.7991027832031	2	472.798009	943.581465	0.54834	0.00025925	3.7281	0.0017627	4.2765	0.0020219	472.7995399702243	116.79	0.8901	115.43	115.14	116.03	-1.3645					35	16	3	0	0	0	0.66704	1	10901	10901		50.025	0.58299	1	96234			33466	35614	27569	27594	36825	36825					0.1074175305980134
LNTTIKRV	8	Unmodified	_LNTTIKRV_					0	0	0		tr|A0A7D6ZII0|A0A7D6ZII0_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07105PE=4SV=1	tr|A0A7D6ZII0|A0A7D6ZII0_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07105PE=4SV=1	tr|A0A7D6ZII0|A0A7D6ZII0_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07105PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	472.798009	943.581465	-0.66724	-0.00031547	4.9117	0.0023222	4.2444	0.0020068	472.8000107180909	115.5	0.93932	115.38	115.14	116.08	-0.11777	-0.052285	0.00049406	NaN	50.025	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70149			33467	35614	27569	27594							0.1074175305980134
LNTTIKRV	8	Unmodified	_LNTTIKRV_					0	0	0		tr|A0A7D6ZII0|A0A7D6ZII0_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07105PE=4SV=1	tr|A0A7D6ZII0|A0A7D6ZII0_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07105PE=4SV=1	tr|A0A7D6ZII0|A0A7D6ZII0_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07105PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	472.798009	943.581465	-0.045865	-2.1685E-05	4.5707	0.002161	4.5248	0.0021393	472.79991332105436	116.54	0.93968	115.49	115.19	116.13	-1.0414	0.058796	0.00017161	NaN	50.025	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78662			33468	35614	27569	27594							0.1074175305980134
LNTTIYFVF	9	Unmodified	_LNTTIYFVF_					0	0	0		tr|A0A553SN04|A0A553SN04_NIACISignaltransductionhistidine-proteinkinaseArlSOS=NialliacirculansOX=1397GN=CEQ21_23415PE=4SV=1	tr|A0A553SN04|A0A553SN04_NIACISignaltransductionhistidine-proteinkinaseArlSOS=NialliacirculansOX=1397GN=CEQ21_23415PE=4SV=1	tr|A0A553SN04|A0A553SN04_NIACISignaltransductionhistidine-proteinkinaseArlSOS=NialliacirculansOX=1397GN=CEQ21_23415PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.2827758789062	2	559.30005	1116.58555	1.9816	0.0011083	-0.28395	-0.00015881	1.6976	0.00094948	559.2986895375052	113.87	0.3162	113.87	113.74	114.06	0					12	6	3	0	0	0	0.027392	1	13004	13004		63.306	11.971	1	52641			33469	33892	27570	27595	36826	36826					0.03191797762860915
LNTTLISLP	9	Unmodified	_LNTTLISLP_					0	0	0			REV__ENST00000373222.3_1_20:40162013-40162172:-|nuORF	REV__ENST00000373222.3_1_20:40162013-40162172:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	486.2908630371094	2	486.292225	970.569897	-0.28888	-0.00014048	-2.8179	-0.0013703	-3.1067	-0.0015108	486.2907334904176	46.526	1.9813	43.817	43.349	45.331	-2.7097					83	39	4	0	0	0	0.53957	1	2770	2770		38.806	5.2906	1	653600	+		33470	25031	27571	27596	36827	36827					0.08343511245811897
LNTTTRLE	8	Unmodified	_LNTTTRLE_					0	0	0			REV__nc|ENSG00000121853|Q92847-2|GHSR	REV__nc|ENSG00000121853|Q92847-2|GHSR	MULTI-MSMS	OvCa99_classI_Rep5	1	474.2638854980469	2	474.261456	946.50836	2.2442	0.0010643	3.629	0.0017211	5.8732	0.0027854	474.26319215973393	137.03	0.48076	137.03	136.82	137.3	0					19	9	3	0	0	0	0.62474	1	15985	15985		58.782	5.4305	1	76830	+		33471	18561	27572	27597	36828	36828					0.032965795465202063
LNTYNALKNL	10	Unmodified	_LNTYNALKNL_					0	0	0			REV__ENSG00000113504|ENST00000264930|SLC12A7	REV__ENSG00000113504|ENST00000264930|SLC12A7	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.3076782226562	2	582.324588	1162.63462	2.1019	0.001224	-4.1761	-0.0024319	-2.0742	-0.0012079	582.8246151346978	80.515	0.59666	80.515	80.274	80.871	0					30	13	4	0	0	0	0.026994	1	8302	8302		25.574	1.3713	1	576880	+		33472	18152	27573	27598	36829	36829					0.059810860518155096
LNVALRVPSI	10	Unmodified	_LNVALRVPSI_					0	0	0		RNF145|p.H596Pfs*7|1|0.02|ENSG00000145860|chr5:159158875-159158876|-/TCAACAG|frameshift_variant;ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145	RNF145|p.H596Pfs*7|1|0.02|ENSG00000145860|chr5:159158875-159158876|-/TCAACAG|frameshift_variant	RNF145|p.H596Pfs*7|1|0.02|ENSG00000145860|chr5:159158875-159158876|-/TCAACAG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.3389282226562	2	541.340041	1080.66553	-4.6043	-0.0024925	0.45655	0.00024715	-4.1477	-0.0022453	541.3401372840034	153.43	1.3203	151.98	151.42	152.74	-1.4516					51	35	2	0	0	0	0.79213	1	15205	15205		19.997	0	1	24592			33473	5248	27574	27599	36830	36830					0.12842284156727146
LNVAPHQALY	10	Unmodified	_LNVAPHQALY_					0	0	0		ENST00000313735.10_1_17:26084105-26084228:-|nuORF	ENST00000313735.10_1_17:26084105-26084228:-|nuORF	ENST00000313735.10_1_17:26084105-26084228:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.8328247070312	2	563.306198	1124.59784	0.57127	0.0003218	-0.94647	-0.00053315	-0.3752	-0.00021135	563.305446072726	81.472	1.4084	78.762	78.445	79.853	-2.7106					70	28	4	0	0	0	0.02661	1	6719	6719		49.442	12.282	1	359420			33474	10316	27575	27600	36831	36831					0.0405283422589946
LNVAPHQALY	10	Unmodified	_LNVAPHQALY_					0	0	0		ENST00000313735.10_1_17:26084105-26084228:-|nuORF	ENST00000313735.10_1_17:26084105-26084228:-|nuORF	ENST00000313735.10_1_17:26084105-26084228:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	563.306198	1124.59784	0.65724	0.00037023	-1.1686	-0.00065828	-0.51136	-0.00028805	563.3053063397196	80.511	2.0684	78.816	78.271	80.34	-1.6951	-0.034702	-0.00073294	NaN	49.442	92	40	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134900			33475	10316	27575	27600							0.0405283422589946
LNVAPHQALY	10	Unmodified	_LNVAPHQALY_					0	0	0		ENST00000313735.10_1_17:26084105-26084228:-|nuORF	ENST00000313735.10_1_17:26084105-26084228:-|nuORF	ENST00000313735.10_1_17:26084105-26084228:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	563.306198	1124.59784	-0.70441	-0.0003968	0.33758	0.00019016	-0.36683	-0.00020664	563.30621849969	81.297	2.0117	78.974	78.492	80.503	-2.3226	0.12374	0.00096394	NaN	49.442	106	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	328950			33476	10316	27575	27600							0.0405283422589946
LNVDEPQLPY	10	Unmodified	_LNVDEPQLPY_					0	0	0			REV__ENSG00000095380|ENST00000210444|NANS	REV__ENSG00000095380|ENST00000210444|NANS	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.8380126953125	2	594.300778	1186.587	2.6199	0.001557	-3.5365	-0.0021017	-0.91654	-0.0005447	594.2981783188391	94.653	0.43166	94.653	94.517	94.949	0					20	9	3	0	0	0	0.026688	1	10345	10345		25.574	5.5773	1	425190	+		33477	17289	27576	27601	36832	36832					0.0011738706095911766
LNVHKEQFI	9	Unmodified	_LNVHKEQFI_					0	0	0			REV__ENSG00000129167|ENST00000682019|TPH1	REV__ENSG00000129167|ENST00000682019|TPH1	MULTI-MSMS	OvCa99_classI_Rep5	1	564.3175048828125	2	564.314023	1126.61349	1.4533	0.00082011	4.0439	0.002282	5.4972	0.0031021	564.3161299316579	155.86	1.9256	155.86	155.17	157.1	0					86	37	3	0	0	0	0.55011	1	18249	18249		37.812	7.97	1	123060	+		33478	18887	27577	27602	36833	36833					0.055251207429591886
LNVILNLANAI	11	Unmodified	_LNVILNLANAI_					0	0	0			REV__tr|A0A7D6VSI5|A0A7D6VSI5_9CLOTV-typeATPsynthasesubunitIOS=ClostridiumintestinaleOX=36845GN=HZF06_16700PE=3SV=1	REV__tr|A0A7D6VSI5|A0A7D6VSI5_9CLOTV-typeATPsynthasesubunitIOS=ClostridiumintestinaleOX=36845GN=HZF06_16700PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3563842773438	2	584.358431	1166.70231	-2.312	-0.0013511	-1.149	-0.00067141	-3.461	-0.0020225	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.71191	1	14644	14644		25.574	2.0514	1	180810	+		33479	31506	27578	27603	36834	36834					0.1256253598260173
LNVILNLANAI	11	Unmodified	_LNVILNLANAI_					0	0	0			REV__tr|A0A7D6VSI5|A0A7D6VSI5_9CLOTV-typeATPsynthasesubunitIOS=ClostridiumintestinaleOX=36845GN=HZF06_16700PE=3SV=1	REV__tr|A0A7D6VSI5|A0A7D6VSI5_9CLOTV-typeATPsynthasesubunitIOS=ClostridiumintestinaleOX=36845GN=HZF06_16700PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	584.356689453125	2	584.358431	1166.70231	-4.6254	-0.0027029	1.1397	0.00066599	-3.4857	-0.0020369	584.3589865391973	145.25	4.5766	144.28	142.9	147.48	-0.97299					233	91	4	0	0	0	0.71498	1	12139	12139		24.519	2.8334	1	156220	+		33480	31506	27578	27603	36835	36835					0.1256253598260173
LNVISGNLIF	10	Unmodified	_LNVISGNLIF_					0	0	0			REV__tr|A0A7D6VNC3|A0A7D6VNC3_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12315PE=4SV=1	REV__tr|A0A7D6VNC3|A0A7D6VNC3_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12315PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3165893554688	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.67931	1	14385	14385		32.812	2.4947	1	202430	+		33481	31169	27579	27604	36836	36836					0.08222889028479585
LNVKLNVL	8	Unmodified	_LNVKLNVL_					0	0	0			REV__ENSG00000139826|ENST00000375898|ABHD13	REV__ENSG00000139826|ENST00000375898|ABHD13	MULTI-MSMS	OvCa9_classI_Rep2	2	456.79693603515625	2	456.797478	911.580402	0.29232	0.00013353	-0.61394	-0.00028045	-0.32162	-0.00014691	456.7971214119819	103.69	3.5724	103.12	102.73	106.3	-0.57639					168	71	3	0	0	0	0.65582	1	9635	9635		52.299	2.2746	1	1420000	+		33482	19635	27580	27605	36837	36837					0.1210753869090695
LNVKYPEVT	9	Unmodified	_LNVKYPEVT_					0	0	0			REV__ENSG00000135829|ENST00000367549|DHX9	REV__ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	OvCa9_classI_Rep2	2	531.8062133789062	2	531.795132	1061.57571	-0.76244	-0.00040546	1.8523	0.00098507	1.0899	0.00057961	531.7962087421324	79.031	0.46115	77.291	76.999	77.46	-1.7398					12	8	2	0	0	0	0.027462	1	6594	6594		35.618	17.294	1	7709.5	+		33483	19325	27581	27606	36838	36838					0.04738609757487211
LNVLFKPDL	9	Unmodified	_LNVLFKPDL_					0	0	0			REV__ENST00000461076.1_1_22:20938698-20939799:+|nuORF	REV__ENST00000461076.1_1_22:20938698-20939799:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.27001953125	2	529.815867	1057.61718	1.5064	0.00079812	2.2555	0.001195	3.7619	0.0019931	530.3181523671191	110.01	0.45162	110.01	109.77	110.22	0					14	9	2	0	0	0	0.027418	1	12503	12503		58.782	14.665	1	189660	+		33484	17341	27582	27607	36839	36839					0.09067790516814966
LNVLIYSVEK	10	Unmodified	_LNVLIYSVEK_					0	0	0		ENST00000357992.8_1_1:205583594-205583885:-|nuORF	ENST00000357992.8_1_1:205583594-205583885:-|nuORF	ENST00000357992.8_1_1:205583594-205583885:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3427124023438	2	589.344989	1176.67542	-5.1334	-0.0030254	1.6192	0.00095427	-3.5142	-0.0020711	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.72142	1	12492	12492		28.081	3.5623	1	589610			33485	10725	27583	27608	36840	36840					0.09415427371436635
LNVLLAEVN	9	Unmodified	_LNVLLAEVN_					0	0	0			REV__tr|A0A553SKF0|A0A553SKF0_NIACICysteinedesulfuraseOS=NialliacirculansOX=1397GN=CEQ21_18655PE=3SV=1	REV__tr|A0A553SKF0|A0A553SKF0_NIACICysteinedesulfuraseOS=NialliacirculansOX=1397GN=CEQ21_18655PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.3240661621094	2	492.78985	983.565146	0.081815	4.0318E-05	-0.79341	-0.00039099	-0.7116	-0.00035067	492.7892282704114	79.098	0.66549	76.346	76.085	76.75	-2.7514					24	13	3	0	0	0	0.027461	1	6421	6421		40.778	8.8233	1	266080	+		33486	30118	27584	27609	36841	36841					0.07270627103048355
LNVLLQPVIGT	11	Unmodified	_LNVLLQPVIGT_					0	0	0			REV__nc|ENSG00000182477|P59922|OR2B8P	REV__nc|ENSG00000182477|P59922|OR2B8P	MULTI-MSMS	OvCa9_classI_Rep2	2	583.858642578125	2	583.860806	1165.70706	-4.259	-0.0024867	1.0102	0.0005898	-3.2489	-0.0018969	583.8612282732444	154.9	1.2136	154.67	154.34	155.56	-0.22696					82	33	4	0	0	0	0.71191	1	15775	15775		25.574	4.6271	1	148650	+		33487	29040	27585	27610	36842	36842					0.1308342012534922
LNVLYCKDD	9	Unmodified	_LNVLYCKDD_					0	0	0			REV__KIF13A|p.T503Hfs*27|1|0.38|ENSG00000137177|chr6:17828266-17828267|-/T|frameshift_variant	REV__KIF13A|p.T503Hfs*27|1|0.38|ENSG00000137177|chr6:17828266-17828267|-/T|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.3150634765625	2	541.762975	1081.5114	2.1874	0.001185	-3.3698	-0.0018256	-1.1824	-0.00064059	541.7606839440577	113.17	0.58818	113.17	112.79	113.38	0					16	12	2	0	0	0	0.027462	1	12854	12854		21.96	4.5949	1	119200	+		33488	19439	27586	27611	36843	36843					-0.0260991339098382
LNVNFPVAI	9	Unmodified	_LNVNFPVAI_					0	0	0		tr|A0A7D7A4G8|A0A7D7A4G8_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01670PE=4SV=1	tr|A0A7D7A4G8|A0A7D7A4G8_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01670PE=4SV=1	tr|A0A7D7A4G8|A0A7D7A4G8_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01670PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	493.7864074707031	2	493.78711	985.559667	1.1397	0.00056278	-1.3973	-0.00068994	-0.25753	-0.00012716	493.786264516808	122.62	1.6631	121.59	121.32	122.98	-1.0286					75	31	3	0	0	0	0.25214	1	9464	9464		68.485	4.2774	1	255040			33489	36144	27587	27612	36844	36844					0.06630948311226348
LNVNIGSAYR	10	Unmodified	_LNVNIGSAYR_					0	0	0			REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.322509765625	2	553.80128	1105.58801	-1.0998	-0.00060909	0.99504	0.00055105	-0.1048	-5.8036E-05	553.801477080461	34.484	0.32807	34.484	34.304	34.632	0					12	6	2	0	0	0	0.026734	1	1649	1649		39.253	3.6345	1	66181	+		33490	18532	27588	27613	36845	36845					0.03943646220523078
LNVQFPPE	8	Unmodified	_LNVQFPPE_					0	0	0		ENSG00000112139|ENST00000434837|MDGA1;nc|ENSG00000112139|Q8NFP4-2|MDGA1	ENSG00000112139|ENST00000434837|MDGA1	ENSG00000112139|ENST00000434837|MDGA1	MULTI-SECPEP	OvCa9_classI_Rep3	3	472.2907409667969	2	472.247818	942.481082	0.35224	0.00016634	-3.9691	-0.0018744	-3.6168	-0.001708	472.24610005987455	99.184	0.55924	97.499	97.27	97.829	-1.685					13	10	2	0	0	0	0.028476	1	6673	6673		76.847	42.674	1	23381			33491	2880	27589	27614	36846	36846					0.007540960061419355
LNVQFPPE	8	Unmodified	_LNVQFPPE_					0	0	0		ENSG00000112139|ENST00000434837|MDGA1;nc|ENSG00000112139|Q8NFP4-2|MDGA1	ENSG00000112139|ENST00000434837|MDGA1	ENSG00000112139|ENST00000434837|MDGA1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	472.247818	942.481082	-0.35255	-0.00016649	-5.0901	-0.0024038	-5.4426	-0.0025703	472.2454477585136	98.158	0.24164	97.265	97.12	97.361	-0.89306	-0.1344	-0.00087771	NaN	76.847	8	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5422.1			33492	2880	27589	27614							0.007540960061419355
LNVQTHAKKR	10	Unmodified	_LNVQTHAKKR_					0	0	0			REV__ENST00000400206.7_2_22:38757512-38776954:-|nuORF	REV__ENST00000400206.7_2_22:38757512-38776954:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8567504882812	2	597.856921	1193.69929	-2.7036	-0.0016164	1.7084	0.0010214	-0.99524	-0.00059501	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.75313	1	12575	12575		24.519	0.99649	1	591030	+		33493	25203	27590	27615	36847	36847					0.11018705648439209
LNVRNMVDS	9	Unmodified	_LNVRNMVDS_					0	0	0			REV__nc|ENSG00000107147|Q5JUK3-4|KCNT1	REV__nc|ENSG00000107147|Q5JUK3-4|KCNT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.3119506835938	2	524.266216	1046.51788	2.0491	0.0010743	3.6549	0.0019162	5.704	0.0029904	524.2673026406532	97.121	0.25842	97.121	97.008	97.267	0					8	5	2	0	0	0	0.027462	1	10655	10655		19.997	1.6724	1	152900	+		33494	28784	27591	27616	36848	36848					-0.0035197543959384348
LNVSNIDQVA	10	Unmodified	_LNVSNIDQVA_					0	0	0		nc|ENSG00000159214|Q8N4L8-2|CCDC24;ENSG00000159214|ENST00000372318|CCDC24;ENST00000463846.5_1_1:44459595-44461452:+|nuORF;ENST00000486064.5_1_1:44457112-44459637:+|nuORF	nc|ENSG00000159214|Q8N4L8-2|CCDC24	nc|ENSG00000159214|Q8N4L8-2|CCDC24	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2991333007812	2	536.785296	1071.55604	-0.71316	-0.00038281	0.35209	0.000189	-0.36107	-0.00019381	536.7853525170709	41.893	0.43061	41.893	41.681	42.111	0					14	9	2	0	0	0	0.026826	1	2650	2650		36.447	0	1	180540			33495	5996	27592	27617	36849	36849					0.023122337467157195
LNVSPMPVE	9	Unmodified	_LNVSPMPVE_					0	0	0		ENSG00000105429|ENST00000251268|MEGF8;nc|ENSG00000105429|Q7Z7M0-2|MEGF8	ENSG00000105429|ENST00000251268|MEGF8	ENSG00000105429|ENST00000251268|MEGF8	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3240661621094	2	493.254785	984.495018	-0.30504	-0.00015046	-1.7745	-0.00087528	-2.0795	-0.0010257	493.25556143211577	78.907	0.83984	76.567	76.213	77.053	-2.3399					19	16	2	0	0	0	0.027433	1	4200	4200		37.812	15.852	1	20498			33496	2459	27593	27618	36850	36850					0.002150054429307602
LNVTDPIAEL	10	Unmodified	_LNVTDPIAEL_					0	0	0			REV__nc|ENSG00000113597|A5PLN9-2|TRAPPC13	REV__nc|ENSG00000113597|A5PLN9-2|TRAPPC13	MULTI-MSMS	OvCa99_classI_Rep5	1	542.7982177734375	2	542.797872	1083.58119	0.86019	0.00046691	0.29504	0.00016015	1.1552	0.00062706	542.7978567793076	153.16	2.0687	153.16	152.45	154.52	0					102	45	3	0	0	0	0.58067	1	17918	17918		44.377	6.5657	1	105310	+		33497	18163	27594	27619	36851	36851					0.04274288549299854
LNVVQVSRN	9	Unmodified	_LNVVQVSRN_					0	0	0			REV__ENSG00000111231|ENST00000228827|GPN3	REV__ENSG00000111231|ENST00000228827|GPN3	MSMS	OvCa99_classI_Rep5	1	514.79541015625	2	514.795998	1027.57744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.777	1	37.777	37.277	38.277	0								0	0	0	0.16802	1	2096	2096		56.721	0	1		+		33498	18022	27595	27620	36852	36852					0.0647566356610696
LNWDISPK	8	Unmodified	_LNWDISPK_					0	0	0		ENSG00000128915|ENST00000261520|ICE2;nc|ENSG00000128915|Q659A1-2|ICE2	ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.7799987792969	2	486.761092	971.507631	-0.42451	-0.00020664	3.3406	0.0016261	2.9161	0.0014194	486.76315152328635	91.656	0.60413	89.113	88.862	89.466	-2.5425					15	11	2	0	0	0	0.028476	1	7914	7914		58.782	0	1	13753			33499	3912	27596	27621	36853	36853					0.020737848974818007
LNWKMVDAS	9	Unmodified	_LNWKMVDAS_					0	0	0		nc|ENSG00000168393|P23919-2|DTYMK;ENSG00000168393|ENST00000305784|DTYMK	nc|ENSG00000168393|P23919-2|DTYMK	nc|ENSG00000168393|P23919-2|DTYMK	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.312744140625	2	532.265684	1062.51682	-0.80687	-0.00042947	0.88832	0.00047282	0.081453	4.3355E-05	532.2659958289524	56.698	1.4752	53.399	53.066	54.541	-3.2984					73	28	3	0	0	0	0.027462	1	3671	3671		34.173	11.13	1	418140			33500	6900	27597	27622	36854	36854					-0.011941898085069624
LNWNPSPSP	9	Unmodified	_LNWNPSPSP_					0	0	0		nc|ENSG00000111799|Q99715-4|COL12A1;ENSG00000111799|ENST00000322507|COL12A1	nc|ENSG00000111799|Q99715-4|COL12A1	nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.35150146484375	2	506.248349	1010.48214	2.6543	0.0013437	-1.3091	-0.00066271	1.3452	0.00068102	506.24852028408395	99.369	0.492	99.369	98.996	99.488	0					16	11	2	0	0	0	0.027462	1	10948	10948		45.952	8.7928	1	396440			33501	2854	27598	27623	36855	36855					-0.022676896249549827
LNWQEYPE	8	Unmodified	_LNWQEYPE_					0	0	0			REV__ENST00000472918.5_1_22:26902745-26908398:-|nuORF	REV__ENST00000472918.5_1_22:26902745-26908398:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	539.3009033203125	2	539.745639	1077.47673	-0.2064	-0.00011141	2.5088	0.0013541	2.3024	0.0012427	539.7473190779872	97.744	1.0084	95.366	95.013	96.022	-2.3786					43	19	3	0	0	0	0.028476	1	8637	8637		25.45	0	1	42176	+		33502	26320	27599	27624	36856	36856					-0.05891413207450569
LNWRCVEP	8	Unmodified	_LNWRCVEP_					0	0	0			REV__ENSG00000073169|ENST00000380903|SELENOO	REV__ENSG00000073169|ENST00000380903|SELENOO	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7749938964844	2	508.752744	1015.49094	1.8597	0.00094614	2.1322	0.0010848	3.9919	0.0020309	509.25517649198514	120.12	0.35082	120.12	119.88	120.23	0					10	7	2	0	0	0	0.028476	1	13767	13767		34.173	8.5985	1	131070	+		33503	16934	27600	27625	36857	36857					-0.016190392601288295
LNWSCRSLN	9	Unmodified	_LNWSCRSLN_					0	0	0			REV__ENST00000483428.1_1_9:125014204-125023774:-|nuORF	REV__ENST00000483428.1_1_9:125014204-125023774:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.3150634765625	2	546.766383	1091.51821	1.8736	0.0010244	1.8233	0.00099691	3.6969	0.0020213	546.7672264131062	83.836	0.84135	83.836	83.504	84.345	0					27	19	2	0	0	0	0.027418	1	8750	8750		58.782	25.97	1	135080	+		33504	26525	27601	27626	36858	36858					-0.023885557197218077
LNWSCRSLN	9	Unmodified	_LNWSCRSLN_					0	0	0			REV__ENST00000483428.1_1_9:125014204-125023774:-|nuORF	REV__ENST00000483428.1_1_9:125014204-125023774:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	546.766383	1091.51821	0.92072	0.00050342	3.9974	0.0021857	4.9182	0.0026891	546.7679655995336	86.373	0.88678	83.746	83.413	84.3	-2.6269	-0.045109	0.0016045	NaN	58.782	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45148	+		33505	26525	27601	27626							-0.023885557197218077
LNWYDWIQ	8	Unmodified	_LNWYDWIQ_					0	0	0		tr|A0A553SS84|A0A553SS84_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02615PE=4SV=1	tr|A0A553SS84|A0A553SS84_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02615PE=4SV=1	tr|A0A553SS84|A0A553SS84_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02615PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.3013916015625	2	569.271824	1136.5291	2.5552	0.0014546	0.62319	0.00035476	3.1784	0.0018094	569.2722037197146	86.274	0.56157	86.274	86.033	86.594	0					29	13	3	0	0	0	0.028476	1	9079	9079		55.504	4.1688	1	936350			33506	34341	27602	27627	36859	36859					-0.03370830073822617
LNYEDGKFSK	10	Unmodified	_LNYEDGKFSK_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;ENST00000537638.6_1_12:57905855-57911076:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.1905822753906	3	400.868027	1199.58225	1.3573	0.0005441	1.7224	0.00069045	3.0797	0.0012345	401.2027240063081	33.161	0.24689	33.161	33.039	33.285	0					6	4	2	0	0	0	0.027088	1	1492	1492		3.2113	0	1	16352			33507	6744	27603	27628	36860	36860					-0.009554970818271613
LNYFYLCINFR	11	Unmodified	_LNYFYLCINFR_					0	0	0		AKAP11|p.S271Ffs*21|1|0.09|ENSG00000023516|chr13:42299555-42299556|-/TTTCTTGAACTACTTTTACCTTTGT|frameshift_variant	AKAP11|p.S271Ffs*21|1|0.09|ENSG00000023516|chr13:42299555-42299556|-/TTTCTTGAACTACTTTTACCTTTGT|frameshift_variant	AKAP11|p.S271Ffs*21|1|0.09|ENSG00000023516|chr13:42299555-42299556|-/TTTCTTGAACTACTTTTACCTTTGT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	489.248779296875	3	489.248074	1464.72239	0.19085	9.3372E-05	-2.0946	-0.0010248	-1.9037	-0.0009314	489.24706366661195	66.737	0.72703	66.737	66.328	67.055	0					49	17	5	0	0	0	0.72483	1	6194	6194		17.833	0.6664	1	6151100			33508	55	27604	27629	36861	36861					0.008619636508910844
LNYGRSAHQ	9	Unmodified	_LNYGRSAHQ_					0	0	0		ENST00000520757.1_1_8:96047742-96087920:+|nuORF	ENST00000520757.1_1_8:96047742-96087920:+|nuORF	ENST00000520757.1_1_8:96047742-96087920:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.2733154296875	2	523.262322	1044.51009	-1.4974	-0.00078352	0.41443	0.00021685	-1.083	-0.00056667	523.2628596780037	95.826	0.25312	93.4	93.204	93.457	-2.4256					6	4	2	0	0	0	0.027462	1	8438	8438		23.042	0	1	8194.5			33509	13112	27605	27630	36862	36862					-0.010383666448888107
LNYHPAWDL	9	Unmodified	_LNYHPAWDL_					0	0	0			REV__ENSG00000147606|ENST00000276609|SLC26A7	REV__ENSG00000147606|ENST00000276609|SLC26A7	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.812255859375	2	564.777274	1127.53999	1.8561	0.0010483	2.437	0.0013764	4.2931	0.0024246	565.2810581283495	109.07	0.4834	109.07	108.93	109.41	0					15	10	2	0	0	0	0.027462	1	12347	12347		12.207	0	1	117220	+		33510	20075	27606	27631	36863	36863					-0.01867427699539803
LNYKDLVAL	9	Unmodified	_LNYKDLVAL_					0	0	0		ABLIM3|p.A310V|1|0.89|ENSG00000173210|chr5:149237488-149237488|C/T|missense_variant	ABLIM3|p.A310V|1|0.89|ENSG00000173210|chr5:149237488-149237488|C/T|missense_variant	ABLIM3|p.A310V|1|0.89|ENSG00000173210|chr5:149237488-149237488|C/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	524.8057250976562	2	524.8055	1047.59645	1.7389	0.00091261	0.57479	0.00030165	2.3137	0.0012143	524.8056112399768	100.17	0.7524	100.17	99.896	100.65	0					37	17	3	0	0	0	0.11471	1	11086	11086		93.195	0	1	3784700			33511	12	27607	27632	36864	36864					0.07455200137133033
LNYLSLIIY	9	Unmodified	_LNYLSLIIY_					0	0	0		Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|128|1|anti-sense	Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|128|1|anti-sense	Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|128|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	556.3233032226562	2	556.323525	1110.6325	0.84512	0.00047016	-0.93378	-0.00051948	-0.088662	-4.9325E-05	556.3228767199973	126.67	1.4636	125.6	125.28	126.75	-1.0715					78	27	5	0	0	0	0.33652	1	9920	9920		58.782	14.665	1	271850			33512	14358	27608	27633	36865	36865					0.08160657314010678
LNYLSLIIY	9	Unmodified	_LNYLSLIIY_					0	0	0		Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|128|1|anti-sense	Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|128|1|anti-sense	Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|128|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	556.3228759765625	2	556.323525	1110.6325	-0.97737	-0.00054373	0.7636	0.00042481	-0.21377	-0.00011892	556.3237904713112	126.92	1.6681	125.48	125.15	126.81	-1.4357					83	32	4	0	0	0	0.56889	1	12143	12143		35.618	0	1	275220			33513	14358	27608	27633	36866	36866					0.08160657314010678
LNYLYYRY	8	Unmodified	_LNYLYYRY_					0	0	0			REV__ENST00000382162.7_1_22:31904270-32000328:+|nuORF	REV__ENST00000382162.7_1_22:31904270-32000328:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.4404907226562	2	584.295299	1166.57605	0.94821	0.00055403	0.56519	0.00033024	1.5134	0.00088427	584.7970995747941	145.84	0.20007	145.84	145.73	145.93	0					5	3	2	0	0	0	0.028476	1	17057	17057		33.516	0	1	11848	+		33514	22986	27609	27634	36867	36867					-0.0005797052269826963
LNYRDRMKD	9	Unmodified	_LNYRDRMKD_					0	0	0			REV__WDR33|p.D1237Vfs*18|1|0.34|ENSG00000136709|chr2:127708748-127708749|-/GCGATGGAAACCAAAGGTTTCCTTAAGGCAAGCA|frameshift_variant	REV__WDR33|p.D1237Vfs*18|1|0.34|ENSG00000136709|chr2:127708748-127708749|-/GCGATGGAAACCAAAGGTTTCCTTAAGGCAAGCA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	605.3643188476562	2	605.803497	1209.59244	1.4675	0.00088899	4.078	0.0024705	5.5454	0.0033595	606.3091794348575	123.49	0.42391	123.49	123.09	123.51	0					11	8	2	0	0	0	0.027455	1	14188	14188		51.335	8.9393	1	35478	+		33515	19398	27610	27635	36868	36868					-0.003972126282405952
LNYRVTTK	8	Unmodified	_LNYRVTTK_					0	0	0			REV__L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|48|1|sense	REV__L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|48|1|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	497.7873229980469	2	497.787641	993.56073	-0.10832	-5.392E-05	-0.2741	-0.00013645	-0.38242	-0.00019036	497.78737708848206	45.132	1.745	42.422	42.049	43.794	-2.7097					77	34	4	0	0	0	0.38598	1	2613	2613		90.777	0.40684	1	697540	+		33516	28538	27611	27636	36869	36869					0.06369162680141471
LNYRYGEP	8	Unmodified	_LNYRYGEP_					0	0	0			REV__ENST00000474651.1_1_3:90271203-90283551:-|nuORF	REV__ENST00000474651.1_1_3:90271203-90283551:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.3258056640625	2	506.248349	1010.48214	-0.44328	-0.00022441	-3.2025	-0.0016213	-3.6458	-0.0018457	506.2465321473461	55.553	0.86106	55.553	55.15	56.011	0					29	20	2	0	0	0	0.028476	1	4542	4542		40.573	0	1	297050	+		33517	22434	27612	27637	36870	36870					-0.022676896249549827
LPAAARSLLA	10	Unmodified	_LPAAARSLLA_					0	0	0		ENST00000355947.6_1_7:99516993-99517128:-|nuORF	ENST00000355947.6_1_7:99516993-99517128:-|nuORF	ENST00000355947.6_1_7:99516993-99517128:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	491.8039855957031	2	491.805834	981.597115	-0.7249	-0.00035651	0.19597	9.6379E-05	-0.52893	-0.00026013	491.8058519690199	97.875	1.9352	96.116	95.414	97.349	-1.7595					68	37	3	0	0	0	0.3976	1	6536	6536		68.787	0	1	776120			33518	10690	27613	27638	36871	36871					0.10558039576835654
LPAAIKAAI	9	Unmodified	_LPAAIKAAI_					0	0	0			REV__FLOT2|p.P365A|1|0.27|ENSG00000132589|chr17:28881197-28881197|G/C|missense_variant	REV__FLOT2|p.P365A|1|0.27|ENSG00000132589|chr17:28881197-28881197|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	434.28814697265625	2	434.286746	866.558939	-0.63264	-0.00027475	-0.11263	-4.8914E-05	-0.74527	-0.00032366	434.286677686111	84.955	4.3034	82.734	81.922	86.225	-2.2204					224	85	5	0	0	0	0.073432	1	5048	5048		105.27	7.7961	1	8290000	+		33519	19088	27614	27639	36872	36872					0.12032153662153178
LPAALGKPVR	10	Unmodified	_LPAALGKPVR_					0	0	0		ENST00000477045.1_1_1:2518532-2519982:+|nuORF;nc|ENSG00000157870|Q8TBF2-4|PRXL2B;ENST00000484099.5_1_1:2518532-2520863:+|nuORF;nc|ENSG00000157870|Q8TBF2-2|PRXL2B;nc|ENSG00000157870|Q8TBF2-6|PRXL2B;ENSG00000157870|ENST00000419916|PRXL2B;nc|ENSG00000157870|Q8TBF2-7|PRXL2B;ENST00000493183.5_1_1:2517940-2520863:+|nuORF;ENST00000481683.5_1_1:2518487-2520915:+|nuORF;nc|ENSG00000157870|Q8TBF2-3|PRXL2B	ENST00000477045.1_1_1:2518532-2519982:+|nuORF	ENST00000477045.1_1_1:2518532-2519982:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	511.3271179199219	2	511.329476	1020.6444	-3.9215	-0.0020052	-0.26328	-0.00013462	-4.1848	-0.0021398	511.32921715256015	153.82	1.2958	153.59	153.28	154.58	-0.22696					76	27	4	0	0	0	0.73378	1	15652	15652		26.693	1.2427	1	348680			33520	5916	27615	27640	36873	36873					0.13490318847846083
LPAALRVRP	9	Unmodified	_LPAALRVRP_					0	0	0			REV__nc|nan|Q8N9H9-2|C1orf127	REV__nc|nan|Q8N9H9-2|C1orf127	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.7688903808594	2	496.821818	991.629084	-0.71052	-0.000353	0.64612	0.000321	-0.064399	-3.1995E-05	496.82200587251464	36.187	0.32002	36.187	35.984	36.304	0					10	6	2	0	0	0	0.027462	1	1901	1901		18.324	0	1	96254	+		33521	21884	27616	27641	36874	36874					0.13293452050641008
LPAALRVRPM	10	Unmodified	_LPAALRVRPM_					0	0	0			REV__nc|nan|Q8N9H9-2|C1orf127	REV__nc|nan|Q8N9H9-2|C1orf127	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.343505859375	2	562.342061	1122.66957	1.2434	0.00069921	1.201	0.00067537	2.4444	0.0013746	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.58282	2	13937	13854;13937		44.117	18.667	1	683710	+		33522	21884	27617	27642	36875;36876	36876					0.11314050378769025
LPAARVSRAAR	11	Unmodified	_LPAARVSRAAR_					0	0	0		ENST00000337959.8_1_22:43266013-43266163:-|nuORF	ENST00000337959.8_1_22:43266013-43266163:-|nuORF	ENST00000337959.8_1_22:43266013-43266163:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	584.3562622070312	2	584.357088	1166.69962	-4.6254	-0.0027029	3.4374	0.0020087	-1.1881	-0.00069425	584.3589865391973	145.25	4.5766	144.28	142.9	147.48	-0.97299					233	91	4	0	0	0	0.72479	1	12307	12307		18.262	3.3972	1	156220			33523	10529	27618	27643	36877	36877					0.12294125368293862
LPAASALWY	9	Unmodified	_LPAASALWY_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	MULTI-MSMS	OvCa9_classI_Rep3	3	496.26617431640625	2	496.26601	990.517468	1.8637	0.0009249	-2.9746	-0.0014762	-1.1108	-0.00055127	496.2643848501877	59.438	2.028	56.339	55.347	57.375	-3.0993					83	55	2	0	0	0	0.6653	1	1946	1946		24.203	0	1	32593	+		33524	17065	27619	27644	36878	36878					0.021829729028468137
LPAAVAGLLL	10	Unmodified	_LPAAVAGLLL_					0	0	0		ENSG00000167700|ENST00000301327|MFSD3;MFSD3|p.L154Tfs*64|1|0.17|ENSG00000167700|chr8:144509789-144509823|CGCGCTGCTGGCGCTGCTGCCCACCTTCTCGTGGC/-|frameshift_variant;ENST00000528047.5_1_8:145734716-145735997:+|nuORF;ENST00000526749.1_1_8:145735004-145735891:+|nuORF	ENSG00000167700|ENST00000301327|MFSD3	ENSG00000167700|ENST00000301327|MFSD3	MULTI-MSMS	OvCa9_classI_Rep2	2	469.3075866699219	2	469.307678	936.600803	0.031838	1.4942E-05	-0.19457	-9.1313E-05	-0.16273	-7.6371E-05	469.30747153745557	110.3	1.0872	110.13	109.81	110.9	-0.17237					41	21	2	0	0	0	0.49566	1	10392	10392		54.765	4.7401	1	142640			33525	6834	27620	27645	36879	36879					0.12996709350716174
LPAAVRALPP	10	Unmodified	_LPAAVRALPP_					0	0	0		ENST00000425217.5_2_12:118105298-118293285:-|nuORF	ENST00000425217.5_2_12:118105298-118293285:-|nuORF	ENST00000425217.5_2_12:118105298-118293285:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	502.8150634765625	2	502.816202	1003.61785	0.75174	0.00037799	-3.2646	-0.0016415	-2.5129	-0.0012635	502.81449604378173	158.53	1.0083	158.53	158.23	159.24	0					53	20	4	0	0	0	0.64063	1	18581	18581		37.159	3.6435	1	885070			33526	11719	27621	27646	36880	36880					0.11618629956512905
LPAAVRALPP	10	Unmodified	_LPAAVRALPP_					0	0	0		ENST00000425217.5_2_12:118105298-118293285:-|nuORF	ENST00000425217.5_2_12:118105298-118293285:-|nuORF	ENST00000425217.5_2_12:118105298-118293285:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	502.8138427734375	2	502.816202	1003.61785	-4.451	-0.0022381	0.22723	0.00011425	-4.2238	-0.0021238	502.8162192928447	153.83	1.4178	153.6	153.28	154.7	-0.22696					88	30	4	0	0	0	0.56767	5	15651	15645;15651;15657;15669;15681		45.952	13.997	1	684970			33527	11719	27621	27646	36881;36882;36883;36884;36885	36882					0.11618629956512905
LPAAVRALPP	10	Unmodified	_LPAAVRALPP_					0	0	0		ENST00000425217.5_2_12:118105298-118293285:-|nuORF	ENST00000425217.5_2_12:118105298-118293285:-|nuORF	ENST00000425217.5_2_12:118105298-118293285:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	502.813720703125	2	502.816202	1003.61785	-5.7843	-0.0029085	1.4056	0.00070674	-4.3788	-0.0022017	502.8168335130942	153.97	1.772	152.96	152.62	154.39	-1.0076					110	37	4	0	0	0	0.56767	7	13179	13179;13185;13191;13197;13203;13215;13221		45.952	13.997	1	860080			33528	11719	27621	27646	36886;36887;36888;36889;36890;36891;36892	36886					0.11618629956512905
LPAAVRALPP	10	Unmodified	_LPAAVRALPP_					0	0	0		ENST00000425217.5_2_12:118105298-118293285:-|nuORF	ENST00000425217.5_2_12:118105298-118293285:-|nuORF	ENST00000425217.5_2_12:118105298-118293285:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.8137512207031	2	502.816202	1003.61785	-4.7582	-0.0023925	0.34644	0.0001742	-4.4117	-0.0022183	502.8162748013114	154.42	1.5526	152.97	152.64	154.2	-1.4516					113	39	4	0	0	0	0.64063	3	15273	15273;15287;15299		37.159	5.2042	1	1254800			33529	11719	27621	27646	36893;36894;36895	36893					0.11618629956512905
LPACAAPIVAL	11	Unmodified	_LPACAAPIVAL_					0	0	0			REV__ENST00000541412.5_1_6:10723249-10723447:+|nuORF	REV__ENST00000541412.5_1_6:10723249-10723447:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.2655639648438	2	519.804445	1037.59434	0.95116	0.00049442	-0.63509	-0.00033012	0.31607	0.00016429	519.8032626769813	147.33	0.19888	147.33	147.16	147.36	0					5	3	2	0	0	0	0.025652	1	17230	17230		24.203	13.337	1	7694.9	+		33530	27371	27622	27647	36896	36896					0.07704448127674368
LPADLRLSI	9	Unmodified	_LPADLRLSI_					0	0	0		SACS|p.V3288Tfs*46|1|0.07|ENSG00000151835|chr13:23334014-23334015|-/TGAAGGGATACTTTTTGTAAGTACGT|frameshift_variant;ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS;SACS|p.L2402Tfs*7|1|0.04|ENSG00000151835|chr13:23336672-23336673|-/T|frameshift_variant	SACS|p.V3288Tfs*46|1|0.07|ENSG00000151835|chr13:23334014-23334015|-/TGAAGGGATACTTTTTGTAAGTACGT|frameshift_variant	SACS|p.V3288Tfs*46|1|0.07|ENSG00000151835|chr13:23334014-23334015|-/TGAAGGGATACTTTTTGTAAGTACGT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	499.30548095703125	2	499.305667	996.596781	-0.15544	-7.7614E-05	0.06889	3.4397E-05	-0.086553	-4.3217E-05	499.3055389013854	109.26	1.4344	109.09	108.67	110.11	-0.17237					82	28	4	0	0	0	0.2784	1	10270	10270		65.465	0	1	327050			33531	5587	27623	27648	36897	36897					0.09834619856997051
LPAFRYLL	8	Unmodified	_LPAFRYLL_					0	0	0		tr|A0A553SMX0|A0A553SMX0_NIACIPhospholipaseOS=NialliacirculansOX=1397GN=CEQ21_23345PE=4SV=1	tr|A0A553SMX0|A0A553SMX0_NIACIPhospholipaseOS=NialliacirculansOX=1397GN=CEQ21_23345PE=4SV=1	tr|A0A553SMX0|A0A553SMX0_NIACIPhospholipaseOS=NialliacirculansOX=1397GN=CEQ21_23345PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	496.7973327636719	2	496.80002	991.585488	-1.0072	-0.00050037	-3.4724	-0.0017251	-4.4796	-0.0022254	496.7982071180884	55.049	2.4852	52.235	51.325	53.81	-2.8139					127	49	5	0	0	0	0.44269	1	3828	3828		83.287	0.98216	1	630500			33532	33878	27624	27649	36898	36898					0.0893584255351243
LPAHLHPQ	8	Unmodified	_LPAHLHPQ_					0	0	0		ENST00000422665.1_1_1:155170029-155174976:+|nuORF	ENST00000422665.1_1_1:155170029-155174976:+|nuORF	ENST00000422665.1_1_1:155170029-155174976:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	456.780029296875	2	456.756144	911.497735	0.20978	9.582E-05	0.81135	0.00037059	1.0211	0.00046641	456.7566689032057	80.074	0.3018	77.734	77.66	77.962	-2.3399					6	5	2	0	0	0	0.028476	1	4367	4367		12.959	4.7279	1	12262			33533	11697	27625	27650	36899	36899					0.03844641682758265
LPAKAKRKAG	10	Unmodified	_LPAKAKRKAG_					0	0	0		ENST00000444704.5_1_12:6761840-6762457:-|nuORF	ENST00000444704.5_1_12:6761840-6762457:-|nuORF	ENST00000444704.5_1_12:6761840-6762457:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.3397827148438	2	520.340375	1038.6662	-0.78006	-0.0004059	0.73752	0.00038376	-0.042543	-2.2137E-05	520.3404101251207	39.944	1.9528	36.99	36.616	38.569	-2.9541					93	37	5	0	0	0	0.76627	1	1705	1705		23.042	1.0826	1	1048100			33534	11959	27626	27651	36900	36900					0.14841123596397665
LPAKFLAL	8	Unmodified	_LPAKFLAL_					0	0	0		ENSG00000105509|ENST00000540069|HAS1;nc|ENSG00000105509|Q92839|HAS1	ENSG00000105509|ENST00000540069|HAS1	ENSG00000105509|ENST00000540069|HAS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.7859191894531	2	436.783839	871.553125	0.81984	0.00035809	-0.95073	-0.00041526	-0.13089	-5.717E-05	436.78332253681526	111.33	1.0006	109.82	109.58	110.58	-1.5111					35	18	2	0	0	0	0.7224	1	10264	10264		38.806	3.6054	1	110900			33535	2466	27627	27652	36901	36901					0.11221055150508619
LPAKLEKGIH	10	Unmodified	_LPAKLEKGIH_					0	0	0		ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.3374633789062	2	553.340041	1104.66553	-4.5455	-0.0025152	0.49685	0.00027493	-4.0487	-0.0022403	553.340345188633	155.45	1.0287	153.96	153.73	154.76	-1.4911					55	29	3	0	0	0	0.78463	1	15382	15382		20.947	0	1	130600			33536	8575	27628	27653	36902	36902					0.11738284156695045
LPAKQAELTRR	11	Unmodified	_LPAKQAELTRR_					0	0	0		nc|ENSG00000100106|Q9H2D6-3|TRIOBP;nc|ENSG00000100106|Q9H2D6-2|TRIOBP;ENSG00000100106|ENST00000644935|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MULTI-MSMS	OvCa9_classI_Rep3	3	641.88330078125	2	641.883136	1281.75172	-4.605	-0.0029559	3.2611	0.0020933	-1.3439	-0.00086262	641.8852528126143	150.24	3.761	149.29	147.05	150.81	-0.95119					231	74	4	0	0	0	0.7246	1	12759	12759		20.837	0.84038	1	246170			33537	2010	27629	27654	36903	36903					0.12211243991373522
LPAKRRCRNAH	11	Unmodified	_LPAKRRCRNAH_					0	0	0			REV__sp|Q6SWA4|UL27_HCMVMProteinUL27OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL27PE=1SV=1	REV__sp|Q6SWA4|UL27_HCMVMProteinUL27OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL27PE=1SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	441.2524719238281	3	441.250923	1320.73094	-3.058	-0.0013494	4.4647	0.00197	1.4067	0.0006207	441.2521822798832	156.14	1.3638	155.91	155.29	156.65	-0.22697					54	41	2	0	0	0	0.72472	1	15900	15900		19.263	6.3052	1	19735	+		33538	29427	27630	27655	36904	36904					0.08340375130774191
LPAKRRCRNAH	11	Unmodified	_LPAKRRCRNAH_					0	0	0			REV__sp|Q6SWA4|UL27_HCMVMProteinUL27OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL27PE=1SV=1	REV__sp|Q6SWA4|UL27_HCMVMProteinUL27OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL27PE=1SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		3	441.250923	1320.73094	-3.058	-0.0013494	4.4647	0.00197	1.4067	0.0006207	441.2521822798832	156.14	1.3638	155.91	155.29	156.65	-0.22697	0	0	NaN	19.263	54	41	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19735	+		33539	29427	27630	27655							0.08340375130774191
LPALANKGI	9	Unmodified	_LPALANKGI_					0	0	0		PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant;ENSG00000205038|ENST00000378402|PKHD1L1;PKHD1L1|p.W985Kfs*40|1|0.06|ENSG00000205038|chr8:109427107-109427108|-/CAAGACCACATCTCATGCTCCTTTGCCTCTCT|frameshift_variant;PKHD1L1|p.M2145Rfs*71|1|0.16|ENSG00000205038|chr8:109452207-109452207|T/-|frameshift_variant	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	448.25390625	2	448.781828	895.549102	2.0217	0.00090729	-2.2109	-0.00099222	-0.18925	-8.4933E-05	448.7807599420136	74.491	1.1969	72.519	72.009	73.206	-1.9711					37	22	2	0	0	0	0.027462	1	6169	6169		18.324	0	1	46115			33540	9047	27631	27656	36905	36905					0.09714965656814911
LPALANKGI	9	Unmodified	_LPALANKGI_					0	0	0		PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant;ENSG00000205038|ENST00000378402|PKHD1L1;PKHD1L1|p.W985Kfs*40|1|0.06|ENSG00000205038|chr8:109427107-109427108|-/CAAGACCACATCTCATGCTCCTTTGCCTCTCT|frameshift_variant;PKHD1L1|p.M2145Rfs*71|1|0.16|ENSG00000205038|chr8:109452207-109452207|T/-|frameshift_variant	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	448.781828	895.549102	0.61776	0.00027724	-1.0678	-0.00047921	-0.45005	-0.00020197	448.78115607317187	75.494	0.82368	72.556	72.304	73.128	-2.9389	0.018073	0.00038726	NaN	33.516	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135380			33541	9047	27631	27656							0.09714965656814911
LPALFFVAE	9	Unmodified	_LPALFFVAE_					0	0	0		ENST00000515518.6_1_5:109760554-109978041:-|nuORF;nc|ENSG00000186952|C9JQI7-2|TMEM232;ENSG00000186952|ENST00000455884|TMEM232	ENST00000515518.6_1_5:109760554-109978041:-|nuORF	ENST00000515518.6_1_5:109760554-109978041:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	504.3188171386719	2	503.784036	1005.55352	-0.68706	-0.00034613	-4.0233	-0.0020269	-4.7104	-0.002373	503.78212206968385	143.59	0.88156	142.15	141.84	142.72	-1.4427					21	16	2	0	0	0	0.027462	1	14119	14119		12.959	0	1	43459			33542	8377	27632	27657	36906	36906					0.0509643007970908
LPALFTRG	8	Unmodified	_LPALFTRG_					0	0	0			REV__tr|A0A7D6VUT6|A0A7D6VUT6_9CLOTTranscription-repair-couplingfactorOS=ClostridiumintestinaleOX=36845GN=mfdPE=3SV=1	REV__tr|A0A7D6VUT6|A0A7D6VUT6_9CLOTTranscription-repair-couplingfactorOS=ClostridiumintestinaleOX=36845GN=mfdPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	437.7621154785156	2	437.760895	873.507237	2.529	0.0011071	-0.31002	-0.00013571	2.2189	0.00097136	437.7606104908485	107.12	0.841	107.12	106.81	107.65	0					45	19	3	0	0	0	0.35894	1	12077	12077		96.048	10.688	1	2253400	+		33543	31693	27633	27658	36907	36907					0.06542409968267293
LPALKQTPK	9	Unmodified	_LPALKQTPK_					0	0	0		ENST00000496704.1_1_2:130897130-130898075:-|nuORF;ENSG00000163040|ENST00000409856|CCDC74A;ENSG00000152076|ENST00000409943|CCDC74B;nc|ENSG00000163040|Q96AQ1|CCDC74A;nc|ENSG00000152076|Q96LY2|CCDC74B	ENST00000496704.1_1_2:130897130-130898075:-|nuORF	ENST00000496704.1_1_2:130897130-130898075:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3153076171875	2	498.316035	994.617516	0.25084	0.000125	0.02899	1.4446E-05	0.27983	0.00013944	498.31556485960044	111.67	0.8866	111.53	111.18	112.06	-0.13961					40	17	3	0	0	0	0.51865	1	10567	10567		40.778	0.20554	1	113720			33544	5601	27634	27659	36908	36908					0.1199921023664956
LPALKQTPK	9	Unmodified	_LPALKQTPK_					0	0	0		ENST00000496704.1_1_2:130897130-130898075:-|nuORF;ENSG00000163040|ENST00000409856|CCDC74A;ENSG00000152076|ENST00000409943|CCDC74B;nc|ENSG00000163040|Q96AQ1|CCDC74A;nc|ENSG00000152076|Q96LY2|CCDC74B	ENST00000496704.1_1_2:130897130-130898075:-|nuORF	ENST00000496704.1_1_2:130897130-130898075:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	498.316035	994.617516	1.4572	0.00072615	-1.2582	-0.00062697	0.19902	9.9176E-05	498.3149742033515	112.59	0.78828	111.52	111.17	111.96	-1.0753	-0.0042721	-0.00082613	NaN	40.778	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121230			33545	5601	27634	27659							0.1199921023664956
LPALLDLLSGR	11	Unmodified	_LPALLDLLSGR_					0	0	0		ENST00000592217.2_1_19:46271832-46273041:+|nuORF	ENST00000592217.2_1_19:46271832-46273041:+|nuORF	ENST00000592217.2_1_19:46271832-46273041:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	584.3552856445312	2	584.358431	1166.70231	-4.6254	-0.0027029	1.1397	0.00066599	-3.4857	-0.0020369	584.3589865391973	145.25	4.5766	144.28	142.9	147.48	-0.97299					233	91	4	0	0	0	0.72064	1	12320	12320		22.58	0.61977	1	156220			33546	14132	27635	27660	36909	36909					0.1256253598260173
LPALLDVSALR	11	Unmodified	_LPALLDVSALR_					0	0	0		ENST00000566066.5_1_16:29831804-29837319:+|nuORF	ENST00000566066.5_1_16:29831804-29837319:+|nuORF	ENST00000566066.5_1_16:29831804-29837319:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3572387695312	2	584.358431	1166.70231	-1.7162	-0.0010029	-1.68	-0.00098173	-3.3962	-0.0019846	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.72064	1	14166	14166		22.58	3.4761	1	833330			33547	13837	27636	27661	36910	36910					0.12562535982578993
LPALPVKDVE	10	Unmodified	_LPALPVKDVE_					0	0	0		ENSG00000154429|ENST00000284617|CCSAP	ENSG00000154429|ENST00000284617|CCSAP	ENSG00000154429|ENST00000284617|CCSAP	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.2850952148438	2	540.818607	1079.62266	-0.43367	-0.00023453	1.0911	0.00059008	0.65743	0.00035555	540.8189197667364	91.562	0.95473	89.538	89.18	90.135	-2.0241					51	18	4	0	0	0	0.02658	1	5753	5753		45.972	0	1	199420			33548	5735	27637	27662	36911	36911					0.08603469308627609
LPALRPTVL	9	Unmodified	_LPALRPTVL_					0	0	0		nc|ENSG00000009950|Q9NP71-4|MLXIPL;nc|ENSG00000009950|Q9NP71-2|MLXIPL;nc|ENSG00000009950|Q9NP71-3|MLXIPL;ENSG00000009950|ENST00000313375|MLXIPL	nc|ENSG00000009950|Q9NP71-4|MLXIPL	nc|ENSG00000009950|Q9NP71-4|MLXIPL	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.3197326660156	2	490.318577	978.622602	-0.1852	-9.0807E-05	-0.086613	-4.2468E-05	-0.27181	-0.00013327	490.3183891902043	103.47	1.3592	101.35	101.01	102.37	-2.1241					61	25	4	0	0	0	0.1944	2	9346	9346;9360		77.318	25.982	1	373070			33549	934	27638	27663	36912;36913	36912					0.1324351409925839
LPALRPTVL	9	Unmodified	_LPALRPTVL_					0	0	0		nc|ENSG00000009950|Q9NP71-4|MLXIPL;nc|ENSG00000009950|Q9NP71-2|MLXIPL;nc|ENSG00000009950|Q9NP71-3|MLXIPL;ENSG00000009950|ENST00000313375|MLXIPL	nc|ENSG00000009950|Q9NP71-4|MLXIPL	nc|ENSG00000009950|Q9NP71-4|MLXIPL	MULTI-MATCH	OvCa9_classI_Rep2	2		2	490.318577	978.622602	-0.63828	-0.00031296	0.38233	0.00018746	-0.25595	-0.0001255	490.31864798104834	102	1.4343	101.24	100.86	102.3	-0.76401	-0.055208	0.00021805	NaN	77.318	69	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	318100			33550	934	27638	27663							0.1324351409925839
LPALRPTVL	9	Unmodified	_LPALRPTVL_					0	0	0		nc|ENSG00000009950|Q9NP71-4|MLXIPL;nc|ENSG00000009950|Q9NP71-2|MLXIPL;nc|ENSG00000009950|Q9NP71-3|MLXIPL;ENSG00000009950|ENST00000313375|MLXIPL	nc|ENSG00000009950|Q9NP71-4|MLXIPL	nc|ENSG00000009950|Q9NP71-4|MLXIPL	MULTI-MATCH	OvCa9_classI_Rep3	3		2	490.318577	978.622602	-0.60921	-0.00029871	0.10094	4.9494E-05	-0.50827	-0.00024922	490.3184475742907	102.81	1.7802	101.29	100.95	102.73	-1.5211	0.0010156	-5.7892E-05	NaN	77.318	76	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	420840			33551	934	27638	27663							0.1324351409925839
LPALRSIGL	9	Unmodified	_LPALRSIGL_					0	0	0		ENST00000483821.1_1_6:33162461-33163032:-|nuORF;nc|ENSG00000186350|P19793-2|RXRA;ENSG00000186350|ENST00000481739|RXRA;ENSG00000143171|ENST00000359842|RXRG;ENSG00000204231|ENST00000374680|RXRB;nc|ENSG00000204231|P28702-3|RXRB	ENST00000483821.1_1_6:33162461-33163032:-|nuORF	ENST00000483821.1_1_6:33162461-33163032:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	470.3028869628906	2	470.302927	938.591301	0.03473	1.6333E-05	0.021763	1.0235E-05	0.056492	2.6569E-05	470.30279388805116	110.02	2.3722	109.85	108.97	111.34	-0.17237					98	47	4	0	0	0	0.070405	7	10342	10330;10337;10342;10348;10355;10362;10374		107.01	13.812	1	333940			33552	5017	27639	27664	36914;36915;36916;36917;36918;36919;36920	36916					0.11954941065175717
LPALRSIGL	9	Unmodified	_LPALRSIGL_					0	0	0		ENST00000483821.1_1_6:33162461-33163032:-|nuORF;nc|ENSG00000186350|P19793-2|RXRA;ENSG00000186350|ENST00000481739|RXRA;ENSG00000143171|ENST00000359842|RXRG;ENSG00000204231|ENST00000374680|RXRB;nc|ENSG00000204231|P28702-3|RXRB	ENST00000483821.1_1_6:33162461-33163032:-|nuORF	ENST00000483821.1_1_6:33162461-33163032:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	470.3027038574219	2	470.302927	938.591301	1.3743	0.00064634	-1.4722	-0.00069238	-0.097879	-4.6033E-05	470.3021200674515	111.05	2.1632	109.95	109.12	111.29	-1.1038					107	42	4	0	0	0	0.14855	8	8027	8027;8034;8040;8045;8051;8058;8064;8070		85.161	28.44	1	319210			33553	5017	27639	27664	36921;36922;36923;36924;36925;36926;36927;36928	36921					0.11954941065175717
LPALRSIGL	9	Unmodified	_LPALRSIGL_					0	0	0		ENST00000483821.1_1_6:33162461-33163032:-|nuORF;nc|ENSG00000186350|P19793-2|RXRA;ENSG00000186350|ENST00000481739|RXRA;ENSG00000143171|ENST00000359842|RXRG;ENSG00000204231|ENST00000374680|RXRB;nc|ENSG00000204231|P28702-3|RXRB	ENST00000483821.1_1_6:33162461-33163032:-|nuORF	ENST00000483821.1_1_6:33162461-33163032:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.3027648925781	2	470.302927	938.591301	1.0181	0.00047881	-1.0541	-0.00049573	-0.035969	-1.6917E-05	470.30231997059514	111.49	2.9922	109.98	108.9	111.89	-1.5111					121	57	4	0	0	0	0.14855	5	10269	10257;10269;10282;10294;10307		85.161	18.322	1	409790			33554	5017	27639	27664	36929;36930;36931;36932;36933	36930					0.11954941065175717
LPALTELFVR	10	Unmodified	_LPALTELFVR_					0	0	0			REV__ENST00000225964.9_1_17:48268227-48270392:-|nuORF	REV__ENST00000225964.9_1_17:48268227-48270392:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	579.845947265625	2	579.847699	1157.68084	-5.3795	-0.0031193	-0.26178	-0.00015179	-5.6413	-0.0032711	579.8474214896436	160.71	0.85727	160.48	160.23	161.09	-0.22696					31	16	3	0	0	0	0.7759	1	16362	16362		21.96	1.4781	1	36888	+		33555	23765	27640	27665	36934	36934					0.10831150953890756
LPAMLRLL	8	Unmodified	_LPAMLRLL_					0	0	0		nc|ENSG00000171649|Q3SY52-3|ZIK1;nc|ENSG00000171649|Q3SY52-2|ZIK1;ENST00000307468.4_1_19:58095687-58102640:+|nuORF;ENSG00000171649|ENST00000597850|ZIK1	nc|ENSG00000171649|Q3SY52-3|ZIK1	nc|ENSG00000171649|Q3SY52-3|ZIK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.2783203125	2	463.796423	925.578294	-0.36029	-0.0001671	3.6747	0.0017043	3.3144	0.0015372	463.7981586000379	75.974	0.62236	73.036	72.79	73.412	-2.9389					14	12	2	0	0	0	0.028476	1	6021	6021		62.978	9.627	1	14410			33556	7222	27641	27666	36935	36935					0.11252786681427551
LPAMLSAPKRK	11	Unmodified	_LPAMLSAPKRK_					0	0	0			REV__ENSG00000168763|ENST00000305510|CNNM3	REV__ENSG00000168763|ENST00000305510|CNNM3	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3685913085938	2	606.368275	1210.722	-1.3399	-0.00081245	3.5293	0.0021401	2.1895	0.0013276	606.3703052098949	148.27	2.4393	146.84	145.43	147.87	-1.4351					149	49	5	0	0	0	0.71789	1	14564	14564		23.523	1.8369	1	591330	+		33557	21399	27642	27667	36936	36936					0.12506588721703338
LPANLLGLLFL	11	Unmodified	_LPANLLGLLFL_					0	0	0			REV__nc|ENSG00000293505|Q96P88|GNRHR2	REV__nc|ENSG00000293505|Q96P88|GNRHR2	MULTI-MSMS	OvCa9_classI_Rep3	3	592.3711547851562	2	592.376092	1182.73763	-5.9356	-0.0035161	-0.9379	-0.00055559	-6.8735	-0.0040717	592.375440751458	154.93	1.0911	153.86	153.56	154.65	-1.0721					63	26	4	0	0	0	0.72244	1	13310	13310		21.96	3.6978	1	79410	+		33558	29226	27643	27668	36937	36937					0.1535719851040085
LPAPERKRPGE	11	Unmodified	_LPAPERKRPGE_					0	0	0			REV__nc|ENSG00000131149|Q14687-2|GSE1	REV__nc|ENSG00000131149|Q14687-2|GSE1	MSMS	OvCa99_classI_Rep5	1	625.3685913085938	2	625.354211	1248.69387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.83	1	134.83	134.33	135.33	0								0	0	0	0.19328	1	15699	15699		39.253	1.4413	1		+		33559	19000	27644	27669	36938	36938					0.07946982065982411
LPAPFRILKNN	11	Unmodified	_LPAPFRILKNN_					0	0	0		ENST00000512327.1_1_3:141105285-141105423:+|nuORF	ENST00000512327.1_1_3:141105285-141105423:+|nuORF	ENST00000512327.1_1_3:141105285-141105423:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8823852539062	2	641.885147	1281.75574	-4.605	-0.0029559	0.1276	8.1903E-05	-4.4774	-0.002874	641.8852528126143	150.24	3.761	149.29	147.05	150.81	-0.95119					231	74	4	0	0	0	0.72473	1	12716	12716		19.104	1.6355	1	246170			33560	12993	27645	27670	36939	36939					0.12613333485137446
LPAPGKLL	8	Unmodified	_LPAPGKLL_					0	0	0		ENST00000576846.1_1_17:7530278-7530680:-|nuORF;ENST00000575826.5_1_17:7530037-7530880:-|nuORF;ENST00000570850.5_1_17:7530037-7530996:-|nuORF;ENST00000571074.5_1_17:7529767-7530880:-|nuORF;ENSG00000141504|ENST00000269298|SAT2	ENST00000576846.1_1_17:7530278-7530680:-|nuORF	ENST00000576846.1_1_17:7530278-7530680:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	404.7699279785156	2	404.768189	807.521825	2.9766	0.0012048	-1.1144	-0.00045107	1.8622	0.00075375	404.76763507123366	125.19	0.78142	125.19	124.93	125.71	0					32	19	2	0	0	0	0.52992	1	14452	14452		74.517	1.8967	1	264670			33561	13953	27646	27671	36940	36940					0.11036482116412571
LPAPIPVTWL	10	Unmodified	_LPAPIPVTWL_					0	0	0			REV__ENST00000359513.8_1_11:46679078-46680967:+|nuORF	REV__ENST00000359513.8_1_11:46679078-46680967:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8297729492188	2	553.83406	1105.65357	-3.0788	-0.0017052	-4.2569	-0.0023576	-7.3358	-0.0040628	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.65434	2	11777	11777;11840		35.618	2.6214	1	308210	+		33562	24814	27647	27672	36941;36942	36941					0.10496667413531213
LPAPKGPAL	9	Unmodified	_LPAPKGPAL_					0	0	0		ENSG00000143294|ENST00000271526|PRCC	ENSG00000143294|ENST00000271526|PRCC	ENSG00000143294|ENST00000271526|PRCC	MULTI-MSMS	OvCa9_classI_Rep4_	4	432.271240234375	2	432.271096	862.527639	0.77355	0.00033438	-0.96875	-0.00041876	-0.1952	-8.4378E-05	432.2705714796727	76.136	1.038	73.197	72.888	73.926	-2.9389					45	21	3	0	0	0	0.42057	1	6029	6029		50.025	0.81375	1	188370			33563	5028	27648	27673	36943	36943					0.09087580628079195
LPAPKGPAL	9	Unmodified	_LPAPKGPAL_					0	0	0		ENSG00000143294|ENST00000271526|PRCC	ENSG00000143294|ENST00000271526|PRCC	ENSG00000143294|ENST00000271526|PRCC	MULTI-MATCH	OvCa9_classI_Rep2	2		2	432.271096	862.527639	-0.73354	-0.00031709	0.75916	0.00032816	0.025622	1.1076E-05	432.271330245595	75.18	1.2346	73.209	72.639	73.874	-1.9711	0.0059889	0.0007712	NaN	50.025	49	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69416			33564	5028	27648	27673							0.09087580628079195
LPAPKQLRV	9	Unmodified	_LPAPKQLRV_					0	0	0		nc|ENSG00000120729|Q9UBF9-2|MYOT;nc|ENSG00000120729|Q9UBF9|MYOT;ENSG00000120729|ENST00000239926|MYOT	nc|ENSG00000120729|Q9UBF9-2|MYOT	nc|ENSG00000120729|Q9UBF9-2|MYOT	MULTI-MSMS	OvCa9_classI_Rep2	2	511.3266906738281	2	511.329476	1020.6444	-3.9215	-0.0020052	-0.26328	-0.00013462	-4.1848	-0.0021398	511.32921715256015	153.82	1.2958	153.59	153.28	154.58	-0.22696					76	27	4	0	0	0	0.6653	1	15646	15646		24.203	2.2429	1	348680			33565	3448	27649	27674	36944	36944					0.13490318847846083
LPAPRAAAP	9	Unmodified	_LPAPRAAAP_					0	0	0			REV__ENST00000392329.6_1_2:191208285-191208582:+|nuORF	REV__ENST00000392329.6_1_2:191208285-191208582:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	432.2596130371094	2	432.25852	862.502486	0.80294	0.00034708	-0.63536	-0.00027464	0.16758	7.244E-05	432.2581094075444	57.8	1.8659	54.455	54.035	55.901	-3.3449					66	36	3	0	0	0	0.52083	1	3770	3770		40.573	7.057	1	361690	+		33566	25252	27650	27675	36945	36945					0.06573525825501747
LPAPRYSLV	9	Unmodified	_LPAPRYSLV_					0	0	0			REV__ENST00000342665.4_2_20:307512-307917:+|nuORF	REV__ENST00000342665.4_2_20:307512-307917:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	508.30279541015625	2	508.300384	1014.58622	-1.2021	-0.00061101	3.5757	0.0018175	2.3737	0.0012065	508.30219341276	91.129	3.5554	89.105	88.52	92.076	-2.0241					114	71	2	0	0	0	0.29717	1	5702	5702		63.306	8.4117	1	1119200	+		33567	24653	27651	27676	36946	36946					0.07950637202566213
LPAPRYSLV	9	Unmodified	_LPAPRYSLV_					0	0	0			REV__ENST00000342665.4_2_20:307512-307917:+|nuORF	REV__ENST00000342665.4_2_20:307512-307917:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.3028259277344	2	508.300384	1014.58622	-0.76496	-0.00038883	3.3715	0.0017138	2.6066	0.0013249	508.30206090776204	91.63	3.1704	89.087	88.142	91.312	-2.5425					143	63	4	0	0	0	0.29717	1	7927	7927		63.306	15.649	1	903450	+		33568	24653	27651	27676	36947	36947					0.07950637202566213
LPAPSQTPPGP	11	Unmodified	_LPAPSQTPPGP_					0	0	0		ENSG00000261221|ENST00000568956|ZNF865	ENSG00000261221|ENST00000568956|ZNF865	ENSG00000261221|ENST00000568956|ZNF865	MULTI-SECPEP	OvCa9_classI_Rep3	3	531.290771484375	2	531.284931	1060.55531	-0.54498	-0.00028954	0.48413	0.00025721	-0.060847	-3.2327E-05	531.2850577491256	81.956	0.90664	79.659	79.182	80.089	-2.2963					39	17	3	0	0	0	0.025611	1	4634	4634		27.882	0	1	400310			33569	9499	27652	27677	36948	36948					0.02745439097657254
LPAPYGLAVLL	11	Unmodified	_LPAPYGLAVLL_					0	0	0			REV__ENST00000368977.8_1_6:108616162-108645125:+|nuORF	REV__ENST00000368977.8_1_6:108616162-108645125:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	563.84423828125	2	563.847167	1125.67978	-0.41085	-0.00023166	-3.1928	-0.0018003	-3.6037	-0.0020319	563.8451243260417	115.68	0.69202	115.56	115.19	115.89	-0.11777					41	13	4	0	0	0	0.54124	1	11056	11056		50.025	7.6284	1	458140	+		33570	24931	27653	27678	36949	36949					0.12196936584996365
LPAQCPRQ	8	Unmodified	_LPAQCPRQ_					0	0	0			REV__ENST00000248248.7_1_16:77225118-77227542:+|nuORF	REV__ENST00000248248.7_1_16:77225118-77227542:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.78045654296875	2	456.739637	911.464721	-0.58136	-0.00026553	1.1236	0.00051322	0.54229	0.00024768	456.740777420055	80.497	0.43568	77.786	77.665	78.101	-2.7106					11	8	2	0	0	0	0.028476	1	6614	6614		33.516	6.7195	1	18436	+		33571	23846	27654	27679	36950	36950					0.0054469156839331845
LPAQGQAAAL	10	Unmodified	_LPAQGQAAAL_					0	0	0			REV__nc|ENSG00000140598|Q7Z2Z2-2|EFL1	REV__nc|ENSG00000140598|Q7Z2Z2-2|EFL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.2912292480469	2	470.266542	938.51853	0.24005	0.00011289	0.22862	0.00010751	0.46867	0.0002204	470.26661808524693	46.666	0.87259	43.593	43.45	44.322	-3.0724					21	16	2	0	0	0	0.026519	1	2464	2464		65.803	5.5092	1	16470	+		33572	19690	27655	27680	36951	36951					0.04681187271739873
LPAQGQSAQP	10	Unmodified	_LPAQGQSAQP_					0	0	0			REV__ENSG00000142599|ENST00000400908|RERE	REV__ENSG00000142599|ENST00000400908|RERE	MULTI-MSMS	OvCa9_classI_Rep2	2	498.7619323730469	2	498.759081	995.503609	3.1867	0.0015894	1.1392	0.00056819	4.3259	0.0021576	498.7595549175533	25.718	0.97412	23.009	22.778	23.752	-2.7097					28	22	2	0	0	0	0.83261	1	283	283		14.865	0.20078	1	22557	+		33573	19793	27656	27681	36952	36952					0.005676954037539872
LPAQGRSIVQ	10	Unmodified	_LPAQGRSIVQ_					0	0	0			REV__nc|ENSG00000121577|Q9HBU9|POPDC2	REV__nc|ENSG00000121577|Q9HBU9|POPDC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.8152465820312	2	534.811648	1067.60874	-0.75304	-0.00040274	-0.34058	-0.00018214	-1.0936	-0.00058488	534.8112942028599	75.475	1.1083	72.537	72.304	73.412	-2.9389					54	22	3	0	0	0	0.40664	1	5950	5950		67.494	6.5217	1	562020	+		33574	28821	27657	27682	36953	36953					0.07764236600155527
LPAQLDRL	8	Unmodified	_LPAQLDRL_					0	0	0			REV__ENSG00000129226|ENST00000250092|CD68	REV__ENSG00000129226|ENST00000250092|CD68	MULTI-MSMS	OvCa9_classI_Rep3	3	463.2774963378906	2	463.276909	924.539266	-0.58518	-0.0002711	0.43027	0.00019933	-0.15492	-7.1769E-05	463.27703196327946	74.974	2.0641	72.564	72.192	74.256	-2.4106					88	40	4	0	0	0	0.56195	1	3764	3764		71.296	2.5089	1	616420	+		33575	18890	27658	27683	36954	36954					0.07397777651419801
LPARAVPLEL	10	Unmodified	_LPARAVPLEL_					0	0	0			REV__ENST00000225964.9_1_17:48268227-48270392:-|nuORF	REV__ENST00000225964.9_1_17:48268227-48270392:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	539.833984375	2	539.834591	1077.65463	1.0044	0.0005422	-3.0771	-0.0016611	-2.0727	-0.0011189	539.8329734873671	154.19	1.7914	154.19	153.69	155.48	0					99	35	4	0	0	0	0.62299	1	18087	18087		39.253	2.0937	1	1101400	+		33576	23765	27659	27684	36955	36955					0.11890881782414908
LPARGKFK	8	Unmodified	_LPARGKFK_					0	0	0		ENSG00000184276|ENST00000328698|DEFB108B	ENSG00000184276|ENST00000328698|DEFB108B	ENSG00000184276|ENST00000328698|DEFB108B	MULTI-MSMS	OvCa9_classI_Rep2	2	458.7879943847656	2	458.789987	915.565421	-2.0925	-0.00096003	-2.3749	-0.0010896	-4.4675	-0.0020496	458.7887619770069	147.55	1.9467	147.32	146.82	148.77	-0.22697					104	38	4	0	0	0	0.74595	1	14976	14976		14.664	4.4793	1	613710			33577	8143	27660	27685	36956	36956					0.10426091613567223
LPARLGLLS	9	Unmodified	_LPARLGLLS_					0	0	0			REV__nc|ENSG00000241127|Q9NRH1-2|YAE1	REV__nc|ENSG00000241127|Q9NRH1-2|YAE1	MULTI-MSMS	OvCa9_classI_Rep2	2	470.302734375	2	470.302927	938.591301	0.03473	1.6333E-05	0.021763	1.0235E-05	0.056492	2.6569E-05	470.30279388805116	110.02	2.3722	109.85	108.97	111.34	-0.17237					98	47	4	0	0	0	0.27001	1	10367	10367		66.429	0.96389	1	333940	+		33578	29157	27661	27686	36957	36957					0.11954941065175717
LPARLGPHL	9	Unmodified	_LPARLGPHL_					0	0	0			REV__nc|ENSG00000102854|Q13421-2|MSLN	REV__nc|ENSG00000102854|Q13421-2|MSLN	MULTI-MSMS	OvCa9_classI_Rep2	2	487.2985534667969	2	487.300719	972.586885	-2.0582	-0.0010029	-2.2412	-0.0010921	-4.2993	-0.0020951	487.29953188884207	145.86	1.1405	145.64	145.18	146.32	-0.22696					53	22	3	0	0	0	0.6653	1	14717	14717		24.203	3.2558	1	104880	+		33579	28776	27662	27687	36958	36958					0.0994947664225947
LPARNKGSF	9	Unmodified	_LPARNKGSF_					0	0	0		PELP1-CAMTA2|3|fusion;PELP1-CAMTA2|1|fusion;ENST00000574442.1_1_17:4872053-4872704:-|nuORF;nc|ENSG00000108509|O94983-5|CAMTA2;ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2	PELP1-CAMTA2|3|fusion	PELP1-CAMTA2|3|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.75726318359375	2	495.279983	988.545414	0.35297	0.00017482	-0.11479	-5.6851E-05	0.23819	0.00011797	495.2799172684645	67.056	0.6907	63.566	63.198	63.888	-3.4902					21	13	2	0	0	0	0.027462	1	4943	4943		39.253	13.803	1	36417			33580	15489	27663	27688	36959	36959					0.05068295882949769
LPARNKGSF	9	Unmodified	_LPARNKGSF_					0	0	0		PELP1-CAMTA2|3|fusion;PELP1-CAMTA2|1|fusion;ENST00000574442.1_1_17:4872053-4872704:-|nuORF;nc|ENSG00000108509|O94983-5|CAMTA2;ENST00000574951.5_1_17:4872053-4885503:-|nuORF;nc|ENSG00000108509|O94983-2|CAMTA2;nc|ENSG00000108509|O94983-3|CAMTA2;nc|ENSG00000108509|O94983-4|CAMTA2;ENSG00000108509|ENST00000348066|CAMTA2	PELP1-CAMTA2|3|fusion	PELP1-CAMTA2|3|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	495.279983	988.545414	1.1046	0.00054709	-0.69073	-0.0003421	0.41389	0.00020499	495.27914383621396	66.177	0.74416	63.481	63.071	63.816	-2.6958	-0.042187	-0.00030528	NaN	31.53	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18110			33581	15489	27663	27688							0.05068295882949769
LPARRKKPADS	11	Unmodified	_LPARRKKPADS_					0	0	0			REV__ENSG00000082438|ENST00000652658|COBLL1	REV__ENSG00000082438|ENST00000652658|COBLL1	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8685913085938	2	619.870028	1237.7255	-3.8587	-0.0023919	2.9348	0.0018192	-0.92393	-0.00057272	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.72473	1	15263	15263		19.104	0.84144	1	492670	+		33582	17086	27664	27689	36960	36960					0.11614974819940471
LPARRSPGPR	10	Unmodified	_LPARRSPGPR_					0	0	0		ENST00000533387.5_1_11:134123508-134129738:+|nuORF	ENST00000533387.5_1_11:134123508-134129738:+|nuORF	ENST00000533387.5_1_11:134123508-134129738:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.83056640625	2	553.830706	1105.64686	0.13278	7.3535E-05	-1.033	-0.00057208	-0.90018	-0.00049855	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.74374	1	14074	14074		25.574	0	1	400120			33583	13338	27665	27690	36961	36961					0.09826167305527633
LPARSRRSIGV	11	Unmodified	_LPARSRRSIGV_					0	0	0			REV__ENST00000314045.11_1_12:113596430-113596655:-|nuORF	REV__ENST00000314045.11_1_12:113596430-113596655:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.371826171875	2	606.370195	1210.72584	-1.3399	-0.00081245	0.36309	0.00022017	-0.97677	-0.00059228	606.3703052098949	148.27	2.4393	146.84	145.43	147.87	-1.4351					149	49	5	0	0	0	0.72324	2	14696	14577;14696		21.686	2.5822	1	591330	+		33584	24378	27666	27691	36962;36963	36963					0.12890394539772387
LPARSRVAARA	11	Unmodified	_LPARSRVAARA_					0	0	0		ENST00000426537.1_1_21:47705768-47706077:-|nuORF	ENST00000426537.1_1_21:47705768-47706077:-|nuORF	ENST00000426537.1_1_21:47705768-47706077:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3575439453125	2	584.357088	1166.69962	-0.5033	-0.0002941	-0.35635	-0.00020823	-0.85964	-0.00050234	584.3567763295431	142.42	4.015	140.98	138.81	142.83	-1.4427					242	77	4	0	0	0	0.7046	1	13848	13848		28.081	1.3886	1	214670			33585	11738	27667	27692	36964	36964					0.122941253683166
LPARVWII	8	Unmodified	_LPARVWII_					0	0	0			REV__ENST00000262187.9_1_7:151163972-151164125:-|nuORF	REV__ENST00000262187.9_1_7:151163972-151164125:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.3083801269531	2	484.308013	966.601472	3.7964	0.0018386	-3.676	-0.0017803	0.12041	5.8313E-05	484.3060586662709	131.36	1.0726	129.88	129.64	130.72	-1.4779					54	21	4	0	0	0	0.72922	1	12617	12617		37.028	5.0736	1	95427	+		33586	23970	27668	27693	36965	36965					0.11683548790426812
LPASGQIALL	10	Unmodified	_LPASGQIALL_					0	0	0		ENSG00000178896|ENST00000316052|EXOSC4	ENSG00000178896|ENST00000316052|EXOSC4	ENSG00000178896|ENST00000316052|EXOSC4	MULTI-MSMS	OvCa9_classI_Rep4_	4	491.8009948730469	2	491.800217	981.585882	-1.7475	-0.00085943	1.401	0.00068899	-0.34656	-0.00017044	491.80078103129136	107.83	3.5166	105.95	105.59	109.11	-1.8785					134	68	3	0	0	0	0.37436	1	9842	9842		71.877	0.49956	1	2385200			33587	7783	27669	27694	36966	36966					0.09435217482700864
LPASPLSPRL	10	Unmodified	_LPASPLSPRL_					0	0	0			REV__ENST00000526246.5_1_11:66102725-66103043:-|nuORF	REV__ENST00000526246.5_1_11:66102725-66103043:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.81982421875	2	525.818941	1049.62333	-0.89486	-0.00047053	0.16362	8.6035E-05	-0.73124	-0.0003845	525.8188740030467	94.503	1.5479	92.035	91.714	93.262	-2.4685					63	30	4	0	0	0	0.43433	1	8283	8283		63.534	0	1	733180	+		33588	27134	27670	27695	36967	36967					0.10050308748327552
LPASVRRRLTS	11	Unmodified	_LPASVRRRLTS_					0	0	0			REV__ENST00000575312.1_1_17:79669560-79669800:-|nuORF	REV__ENST00000575312.1_1_17:79669560-79669800:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	628.3829956054688	2	628.383303	1254.75205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	150.61	1	149.17	148.67	149.67	-1.4344								0	0	0	0.19474	1	14880	14880		18.262	0	1		+		33589	27775	27671	27696	36968	36968					0.1348666371127365
LPASWRLVRP	10	Unmodified	_LPASWRLVRP_					0	0	0		ENST00000539208.5_1_9:36258326-36258398:-|nuORF	ENST00000539208.5_1_9:36258326-36258398:-|nuORF	ENST00000539208.5_1_9:36258326-36258398:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	597.855712890625	2	597.858932	1193.70331	-3.1766	-0.0018991	-1.0809	-0.0006462	-4.2574	-0.0025453	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.74374	1	15099	15099		25.574	3.8883	1	436470			33590	13432	27672	27697	36969	36969					0.11420795142180395
LPASWRLVRP	10	Unmodified	_LPASWRLVRP_					0	0	0		ENST00000539208.5_1_9:36258326-36258398:-|nuORF	ENST00000539208.5_1_9:36258326-36258398:-|nuORF	ENST00000539208.5_1_9:36258326-36258398:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8566284179688	2	597.858932	1193.70331	-0.38237	-0.0002286	-3.9169	-0.0023418	-4.2993	-0.0025704	597.8564103488146	145.14	4.0194	143.71	141.51	145.53	-1.4357					229	77	4	0	0	0	0.74374	1	14322	14322		25.574	3.6142	1	217250			33591	13432	27672	27697	36970	36970					0.11420795142180395
LPATRGYAL	9	Unmodified	_LPATRGYAL_					0	0	0		ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENSG00000213983|ENST00000397120|AP1G2;ENST00000554982.5_1_14:24031495-24032684:-|nuORF	ENST00000460049.6_1_14:24028960-24033376:-|nuORF	ENST00000460049.6_1_14:24028960-24033376:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	481.2779846191406	2	481.276909	960.539266	-0.75286	-0.00036233	1.0325	0.00049691	0.27962	0.00013458	481.2775599086682	77.06	0.83206	74.688	74.453	75.285	-2.3715					51	15	4	0	0	0	0.14855	1	4010	4010		85.161	20.954	1	819190			33592	9159	27673	27698	36971	36971					0.05741777651417124
LPATRGYAL	9	Unmodified	_LPATRGYAL_					0	0	0		ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENSG00000213983|ENST00000397120|AP1G2;ENST00000554982.5_1_14:24031495-24032684:-|nuORF	ENST00000460049.6_1_14:24028960-24033376:-|nuORF	ENST00000460049.6_1_14:24028960-24033376:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.27911376953125	2	481.276909	960.539266	-0.17341	-8.3457E-05	-1.2838	-0.00061789	-1.4573	-0.00070134	481.2762660765146	77.879	0.72801	75.063	74.873	75.601	-2.8165					47	14	4	0	0	0	0.10502	1	6255	6255		95.815	21.56	1	567650			33593	9159	27673	27698	36972	36972					0.05741777651417124
LPATRGYAL	9	Unmodified	_LPATRGYAL_					0	0	0		ENST00000460049.6_1_14:24028960-24033376:-|nuORF;ENST00000535852.6_1_14:24028960-24035624:-|nuORF;ENSG00000213983|ENST00000397120|AP1G2;ENST00000554982.5_1_14:24031495-24032684:-|nuORF	ENST00000460049.6_1_14:24028960-24033376:-|nuORF	ENST00000460049.6_1_14:24028960-24033376:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	481.276909	960.539266	-0.82979	-0.00039936	-0.35084	-0.00016885	-1.1806	-0.00056821	481.2766949389512	76.902	0.93784	75.112	74.53	75.468	-1.7894	0.024726	0.00034228	NaN	95.815	54	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212710			33594	9159	27673	27698							0.05741777651417124
LPATRLAPIP	10	Unmodified	_LPATRLAPIP_					0	0	0			REV__ENSG00000163909|ENST00000372852|HEYL	REV__ENSG00000163909|ENST00000372852|HEYL	MULTI-MSMS	OvCa9_classI_Rep2	2	524.8265991210938	2	524.829309	1047.64407	-4.3888	-0.0023034	0.2202	0.00011557	-4.1686	-0.0021878	524.8292785030237	156.45	1.4045	156.23	155.89	157.3	-0.22696					98	36	4	0	0	0	0.66721	2	15912	15912;15948		34.173	6.2903	1	556080	+		33595	20910	27674	27699	36973;36974	36973					0.12214899127957324
LPATRLAPIP	10	Unmodified	_LPATRLAPIP_					0	0	0			REV__ENSG00000163909|ENST00000372852|HEYL	REV__ENSG00000163909|ENST00000372852|HEYL	MULTI-MSMS	OvCa9_classI_Rep3	3	524.82666015625	2	524.829309	1047.64407	-6.4209	-0.0033699	2.2692	0.001191	-4.1517	-0.0021789	524.8303693371411	156.49	1.5557	155.32	154.95	156.51	-1.1687					100	33	5	0	0	0	0.66721	1	13474	13474		34.173	5.023	1	1025700	+		33596	20910	27674	27699	36975	36975					0.12214899127957324
LPATVKVAS	9	Unmodified	_LPATVKVAS_					0	0	0		nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	MULTI-MSMS	OvCa9_classI_Rep2	2	443.27294921875	2	443.273835	884.533118	0.83529	0.00037026	-3.8589	-0.0017105	-3.0236	-0.0013403	443.27205335230417	138.39	1.523	138.16	137.68	139.21	-0.22696					79	30	3	0	0	0	0.65371	2	13829	13829;13836		25.574	3.6142	1	138730			33597	7304	27675	27700	36976;36977	36976					0.08623259419891838
LPATVKVAS	9	Unmodified	_LPATVKVAS_					0	0	0		nc|ENSG00000172534|P51610-2|HCFC1;ENSG00000172534|ENST00000310441|HCFC1;nc|ENSG00000172534|P51610-4|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	nc|ENSG00000172534|P51610-2|HCFC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	443.2738037109375	2	443.273835	884.533118	1.1525	0.00051086	-4.3689	-0.0019366	-3.2165	-0.0014258	443.27180064343105	139.52	2.0991	138.02	137.22	139.32	-1.4952					91	40	3	0	0	0	0.62335	1	13619	13619		29.17	0.020503	1	858700			33598	7304	27675	27700	36978	36978					0.08623259419891838
LPATVPTSRLL	11	Unmodified	_LPATVPTSRLL_					0	0	0		ENST00000564426.5_1_16:2203418-2203928:+|nuORF	ENST00000564426.5_1_16:2203418-2203928:+|nuORF	ENST00000564426.5_1_16:2203418-2203928:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3557739257812	2	584.358431	1166.70231	-2.312	-0.0013511	-1.149	-0.00067141	-3.461	-0.0020225	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.72064	1	14746	14746		22.58	2.5492	1	180810			33599	13806	27676	27701	36979	36979					0.1256253598260173
LPAVKEDRCS	10	Unmodified	_LPAVKEDRCS_					0	0	0			REV__nc|ENSG00000108963|Q9BZG8-2|DPH1	REV__nc|ENSG00000108963|Q9BZG8-2|DPH1	MULTI-MSMS	OvCa9_classI_Rep3	3	559.2875366210938	2	559.287148	1116.55974	1.8335	0.0010255	-1.8144	-0.0010148	0.019083	1.0673E-05	559.285935160322	57.961	2.4261	54.834	53.92	56.346	-3.1264					105	62	3	0	0	0	0.75313	1	1750	1750		24.519	4.5224	1	45402	+		33600	17912	27677	27702	36980	36980					0.0061258024893504626
LPAVRLPI	8	Unmodified	_LPAVRLPI_					0	0	0		ENST00000435504.8_1_2:25994354-26022267:-|nuORF	ENST00000435504.8_1_2:25994354-26022267:-|nuORF	ENST00000435504.8_1_2:25994354-26022267:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	439.7945251464844	2	439.794738	877.574923	2.1512	0.00094608	-2.0115	-0.00088466	0.13966	6.1422E-05	439.7937294670286	112.09	1.5248	110.98	110.55	112.07	-1.1038					83	30	4	0	0	0	0.63104	1	8192	8192		57.453	2.688	1	308550			33601	11860	27678	27703	36981	36981					0.13123859899098989
LPAVTVPVDQ	10	Unmodified	_LPAVTVPVDQ_					0	0	0			REV__ENST00000450172.5_2_3:46722734-46730936:-|nuORF	REV__ENST00000450172.5_2_3:46722734-46730936:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	519.7932739257812	2	519.795132	1037.57571	1.5307	0.00079564	-4.1853	-0.0021755	-2.6546	-0.0013798	519.7927708482009	121.53	4.9018	120.5	119.85	124.76	-1.0286					197	93	4	0	0	0	0.48198	1	9346	9346		56.721	5.3856	1	827300	+		33602	22042	27679	27704	36982	36982					0.058426097574511004
LPAVYMSF	8	Unmodified	_LPAVYMSF_					0	0	0			REV__nc|ENSG00000109680|Q8N5T2-2|TBC1D19	REV__nc|ENSG00000109680|Q8N5T2-2|TBC1D19	MULTI-MSMS	OvCa99_classI_Rep5	1	464.23681640625	2	464.235864	926.457176	0.50083	0.0002325	1.8687	0.00086752	2.3695	0.0011	464.2365617702465	114.34	1.196	114.34	113.92	115.12	0					54	25	3	0	0	0	0.67106	1	13071	13071		49.211	2.4444	1	661830	+		33603	17941	27680	27705	36983	36983					-0.008994607518843623
LPCELVWGAW	10	Unmodified	_LPCELVWGAW_					0	0	0			REV__nc|ENSG00000166762|Q96P56-3|CATSPER2	REV__nc|ENSG00000166762|Q96P56-3|CATSPER2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	587.8139038085938	2	587.291702	1172.56885	-1.1422	-0.00067082	-1.5444	-0.00090704	-2.6867	-0.0015779	587.2905879524219	99.648	1.1768	97.323	96.951	98.128	-2.3253					48	22	3	0	0	0	0.026939	1	8925	8925		17.365	0	1	178270	+		33604	21218	27681	27706	36984	36984					-0.010530263947430285
LPCLLPVLL	9	Unmodified	_LPCLLPVLL_					0	0	0		Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|75|2|sense;Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|76|2|sense;Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|76|2|sense;HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|213|3|sense	Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|75|2|sense	Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|75|2|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	490.7740173339844	2	490.814282	979.614011	2.1739	0.001067	1.5093	0.00074078	3.6832	0.0018078	490.8149502450466	90.439	0.84555	89.137	88.83	89.675	-1.302					27	16	2	0	0	0	0.027412	1	8016	8016		39.021	0	1	41474			33605	14386	27682	27707	36985	36985					0.1233882413845322
LPCLTSEF	8	Unmodified	_LPCLTSEF_					0	0	0		ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	ENSG00000136021|ENST00000360820|SCYL2	MULTI-MSMS	OvCa99_classI_Rep5	1	455.2234802246094	2	455.222954	908.431355	1.7869	0.00081345	-4.101	-0.0018669	-2.3141	-0.0010534	455.22073051571624	148.71	0.44406	148.71	148.47	148.92	0					20	8	3	0	0	0	0.74361	1	17398	17398		29.842	0.69198	1	47310			33606	4447	27683	27708	36986	36986					-0.02652354994165762
LPCLVWAVI	9	Unmodified	_LPCLVWAVI_					0	0	0		ENST00000449089.6_1_9:132657774-132657972:-|nuORF	ENST00000449089.6_1_9:132657774-132657972:-|nuORF	ENST00000449089.6_1_9:132657774-132657972:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3213195800781	2	507.296256	1012.57796	3.0685	0.0015566	-3.3074	-0.0016778	-0.23894	-0.00012121	507.7954673826842	102.52	0.59669	102.52	102.25	102.85	0					15	13	2	0	0	0	0.027255	1	11471	11471		72.62	6.1906	1	156360			33607	12025	27684	27709	36987	36987					0.07217366961583593
LPCPGILGE	9	Unmodified	_LPCPGILGE_					0	0	0		ENST00000493583.5_1_X:48887540-48887582:-|nuORF	ENST00000493583.5_1_X:48887540-48887582:-|nuORF	ENST00000493583.5_1_X:48887540-48887582:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	449.73828125	2	449.738771	897.462989	1.883	0.00084684	-3.3704	-0.0015158	-1.4874	-0.00066896	449.73708603336974	147.55	0.92099	147.55	147.26	148.18	0					34	18	3	0	0	0	0.25214	1	17283	17283		68.485	2.5872	1	165470			33608	12739	27685	27710	36988	36988					0.010156377597922983
LPCQTNIITI	10	Unmodified	_LPCQTNIITI_					0	0	0		ENST00000494268.1_1_X:11778342-11782058:+|nuORF;MSL3|p.Y277Lfs*3|1|0.05|ENSG00000005302|chrX:11763857-11763858|-/TCTA|frameshift_variant;nc|ENSG00000005302|Q8N5Y2-4|MSL3;nc|ENSG00000005302|Q8N5Y2-6|MSL3;nc|ENSG00000005302|Q8N5Y2-5|MSL3;nc|ENSG00000005302|Q8N5Y2-2|MSL3;nc|ENSG00000005302|Q8N5Y2-3|MSL3;ENSG00000005302|ENST00000312196|MSL3	ENST00000494268.1_1_X:11778342-11782058:+|nuORF	ENST00000494268.1_1_X:11778342-11782058:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.7637329101562	2	558.310092	1114.60563	-0.34614	-0.00019325	-2.8499	-0.0015911	-3.1961	-0.0017844	558.3085258599449	100.22	0.61163	97.893	97.568	98.179	-2.3253					19	11	2	0	0	0	0.026653	1	8933	8933		49.536	8.7579	1	30091			33609	850	27686	27711	36989	36989					0.05291225431142266
LPCQTNIITI	10	Unmodified	_LPCQTNIITI_					0	0	0		ENST00000494268.1_1_X:11778342-11782058:+|nuORF;MSL3|p.Y277Lfs*3|1|0.05|ENSG00000005302|chrX:11763857-11763858|-/TCTA|frameshift_variant;nc|ENSG00000005302|Q8N5Y2-4|MSL3;nc|ENSG00000005302|Q8N5Y2-6|MSL3;nc|ENSG00000005302|Q8N5Y2-5|MSL3;nc|ENSG00000005302|Q8N5Y2-2|MSL3;nc|ENSG00000005302|Q8N5Y2-3|MSL3;ENSG00000005302|ENST00000312196|MSL3	ENST00000494268.1_1_X:11778342-11782058:+|nuORF	ENST00000494268.1_1_X:11778342-11782058:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	558.310092	1114.60563	-0.79108	-0.00044167	-1.6429	-0.00091723	-2.4339	-0.0013589	558.308899037796	99.696	0.47156	98.011	97.777	98.248	-1.685	0.10869	0.0011423	NaN	49.536	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25389			33610	850	27686	27711							0.05291225431142266
LPCSFVVCNAT	11	Unmodified	_LPCSFVVCNAT_					0	0	0			REV__nc|ENSG00000135424|Q13683-13|ITGA7	REV__nc|ENSG00000135424|Q13683-13|ITGA7	MULTI-MSMS	OvCa99_classI_Rep5	1	577.2736206054688	2	577.272652	1152.53075	-0.48945	-0.00028254	1.9083	0.0011016	1.4188	0.00081904	577.2735934334592	23.038	0.30103	23.038	22.894	23.195	0					11	5	3	0	0	0	0.72064	1	284	284		22.58	1.6327	1	68527	+		33611	19286	27687	27712	36990	36990					-0.03941280371736866
LPCVTPSKK	9	Unmodified	_LPCVTPSKK_					0	0	0		ENST00000220592.9_2_8:141536826-141536982:-|nuORF	ENST00000220592.9_2_8:141536826-141536982:-|nuORF	ENST00000220592.9_2_8:141536826-141536982:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	486.7812194824219	2	486.78097	971.547388	2.1455	0.0010444	-3.3429	-0.0016272	-1.1973	-0.00058284	486.7791659805721	121.92	1.0627	121.92	121.57	122.63	0					46	22	3	0	0	0	0.33652	1	14065	14065		58.782	12.81	1	832560			33612	9686	27688	27713	36991	36991					0.06047588576552698
LPCYLEAQP	9	Unmodified	_LPCYLEAQP_					0	0	0		ENST00000317271.2_1_7:99816887-99817430:+|nuORF;ENST00000470714.5_1_7:99936468-99949880:+|nuORF	ENST00000317271.2_1_7:99816887-99817430:+|nuORF	ENST00000317271.2_1_7:99816887-99817430:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.3246459960938	2	517.254785	1032.49502	0.94219	0.00048735	3.6113	0.0018679	4.5535	0.0023553	517.7572678067667	105.09	0.26169	103.75	103.57	103.83	-1.3482					6	4	2	0	0	0	0.027456	1	7342	7342		38.806	0	1	6604.8			33613	10353	27689	27714	36992	36992					-0.019929945570765994
LPCYTVFKLK	10	Carbamidomethyl (C)	_LPC(Carbamidomethyl (C))YTVFKLK_	LPC(1)YTVFKLK		LPC(55)YTVFKLK		0	1	0		ENST00000367097.7_1_6:158931717-158931981:+|nuORF	ENST00000367097.7_1_6:158931717-158931981:+|nuORF	ENST00000367097.7_1_6:158931717-158931981:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	634.8597412109375	2	634.857209	1267.69987	0.91743	0.00058244	0.78489	0.00049829	1.7023	0.0010807	634.8576710032044	97.52	2.7566	95.141	94.708	97.465	-2.3786					143	53	5	0	0	0	0.49558	1	8685	8685		54.776	8.3195	1	2559000			33614	10832	27690	27715	36993	36993	113				0.07672364253289743
LPDERTISL	9	Unmodified	_LPDERTISL_					0	0	0		ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.2898559570312	2	522.290214	1042.56587	-1.2508	-0.0006533	1.4874	0.00077685	0.23656	0.00012355	522.2908820646427	92.552	1.8579	90.017	89.218	91.076	-2.5358					97	36	4	0	0	0	0.1149	1	8049	8049		93.143	4.5004	1	576150			33615	2141	27691	27716	36994	36994					0.046294217521108294
LPDERTISL	9	Unmodified	_LPDERTISL_					0	0	0		ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	522.290214	1042.56587	1.4232	0.00074331	-1.3121	-0.00068527	0.11112	5.8036E-05	522.2894246090341	91.398	2.5474	90.162	89.439	91.986	-1.2355	0.094825	-0.00086012	NaN	93.143	99	48	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	359700			33616	2141	27691	27716							0.046294217521108294
LPDERTISL	9	Unmodified	_LPDERTISL_					0	0	0		ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	522.290214	1042.56587	-1.2278	-0.00064127	0.5686	0.00029697	-0.65921	-0.0003443	522.2904196251955	92.048	2.7417	90.024	89.079	91.821	-2.0241	-0.043715	0.0011044	NaN	93.143	111	55	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	689720			33617	2141	27691	27716							0.046294217521108294
LPDHRLRR	8	Unmodified	_LPDHRLRR_					0	0	0		ENST00000609471.1_1_9:139694564-139695182:+|nuORF	ENST00000609471.1_1_9:139694564-139695182:+|nuORF	ENST00000609471.1_1_9:139694564-139695182:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	531.81640625	2	531.817599	1061.62064	-1.6193	-0.00086116	0.29076	0.00015463	-1.3285	-0.00070653	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.7549	1	11472	11472		24.203	1.1603	1	178650			33618	14304	27692	27717	36995	36995					0.09229898134049108
LPDKLTEASD	10	Unmodified	_LPDKLTEASD_					0	0	0			REV__tr|A0A553SPY3|A0A553SPY3_NIACIIron-hydroxamateABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13610PE=3SV=1	REV__tr|A0A553SPY3|A0A553SPY3_NIACIIron-hydroxamateABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13610PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	544.7799072265625	2	544.777136	1087.53972	1.5844	0.00086316	2.6279	0.0014316	4.2124	0.0022948	544.7783465181305	61.638	1.529	58.569	57.997	59.526	-3.0685					84	39	3	0	0	0	0.62299	1	2171	2171		39.253	2.0937	1	38046	+		33619	30584	27693	27718	36996	36996					-0.0005489221005063882
LPDLKIHIN	9	Unmodified	_LPDLKIHIN_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.M3578Ifs*3|1|0.03|ENSG00000048707|chr1:12369624-12369625|-/TATAT|frameshift_variant;VPS13D|p.G1592Yfs*19|1|0.06|ENSG00000048707|chr1:12282875-12282876|-/TACAAGTGTGACCAGCCGCGCCCAGGCA|frameshift_variant	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8171997070312	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.68424	1	13827	13827		21.96	1.9631	1	166960			33620	1159	27694	27719	36997	36997					0.09498308748334239
LPDLKIHIN	9	Unmodified	_LPDLKIHIN_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.M3578Ifs*3|1|0.03|ENSG00000048707|chr1:12369624-12369625|-/TATAT|frameshift_variant;VPS13D|p.G1592Yfs*19|1|0.06|ENSG00000048707|chr1:12282875-12282876|-/TACAAGTGTGACCAGCCGCGCCCAGGCA|frameshift_variant	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8158569335938	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.59983	1	11507	11507		31.955	2.8053	1	178650			33621	1159	27694	27719	36998	36998					0.09498308748334239
LPDLKIHIN	9	Unmodified	_LPDLKIHIN_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.M3578Ifs*3|1|0.03|ENSG00000048707|chr1:12369624-12369625|-/TATAT|frameshift_variant;VPS13D|p.G1592Yfs*19|1|0.06|ENSG00000048707|chr1:12282875-12282876|-/TACAAGTGTGACCAGCCGCGCCCAGGCA|frameshift_variant	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.817626953125	2	531.818941	1061.62333	0.089047	4.7357E-05	-3.7428	-0.0019905	-3.6538	-0.0019431	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.53483	1	13752	13752		39.253	3.6345	1	263230			33622	1159	27694	27719	36999	36999					0.09498308748334239
LPDLQRSKQAL	11	Unmodified	_LPDLQRSKQAL_					0	0	0		ENST00000563160.5_1_15:45879945-45897659:+|nuORF;nc|ENSG00000104164|Q9UL45-2|BLOC1S6;ENST00000568816.5_1_15:45879846-45893495:+|nuORF;ENSG00000104164|ENST00000220531|BLOC1S6	ENST00000563160.5_1_15:45879945-45897659:+|nuORF	ENST00000563160.5_1_15:45879945-45897659:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	423.58258056640625	3	423.582221	1267.72483	-0.1009	-4.2738E-05	0.034116	1.4451E-05	-0.06678	-2.8287E-05	423.58218120871413	69.894	1.7209	67.324	66.915	68.635	-2.5707					95	33	4	0	0	0	0.66539	1	5575	5575		38.714	2.3964	1	510120			33623	2356	27695	27720	37000	37000					0.10168135380240528
LPDLSVTS	8	Unmodified	_LPDLSVTS_					0	0	0		ZNF534|p.R496Gfs*4|1|0.11|ENSG00000198633|chr19:52438905-52438906|-/GGGC|frameshift_variant;ENSG00000198633|ENST00000433050|ZNF534;nc|ENSG00000198633|Q76KX8|ZNF534;ZNF528|p.K220Rfs*10|1|0.05|ENSG00000167555|chr19:52415509-52415509|C/-|frameshift_variant;ZNF528|p.K519Tfs*5|1|0.05|ENSG00000167555|chr19:52416408-52416409|AG/-|frameshift_variant;ENSG00000167555|ENST00000360465|ZNF528	ZNF534|p.R496Gfs*4|1|0.11|ENSG00000198633|chr19:52438905-52438906|-/GGGC|frameshift_variant;ENSG00000167555|ENST00000360465|ZNF528	ENSG00000167555|ENST00000360465|ZNF528	MSMS	OvCa9_classI_Rep4_	4	416.22930908203125	2	416.226551	830.438549	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.21	1	130.71	130.21	131.21	-1.5015								0	0	0	0.30129	1	12724	12724		40.573	5.3719	1				33624	8838;6807	27696	27721	37001	37001					0.01654700877918458
LPDPAPLTDSL	11	Unmodified	_LPDPAPLTDSL_					0	0	0		ENST00000420509.1_1_2:206949336-206950832:+|nuORF	ENST00000420509.1_1_2:206949336-206950832:+|nuORF	ENST00000420509.1_1_2:206949336-206950832:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2807006835938	2	569.803154	1137.59175	1.7301	0.00098583	-0.22292	-0.00012702	1.5072	0.00085881	570.302143037766	129.62	0.46341	129.62	129.35	129.82	0					12	9	2	0	0	0	0.025298	1	15042	15042		24.519	0	1	41086			33625	11670	27697	27722	37002	37002					0.028462712037253368
LPDPQFSTDD	10	Unmodified	_LPDPQFSTDD_					0	0	0			REV__ENST00000441507.1_1_3:48539778-48540581:-|nuORF	REV__ENST00000441507.1_1_3:48539778-48540581:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	567.3189697265625	2	567.751118	1133.48768	-1.2314	-0.0006991	-1.4227	-0.00080775	-2.6541	-0.0015069	567.7497798679781	84.243	0.72635	82.697	82.275	83.001	-1.5462					18	13	2	0	0	0	0.026849	1	7276	7276		25.574	0	1	15523	+		33626	25845	27698	27723	37003	37003					-0.07372055623818596
LPDSESLP	8	Unmodified	_LPDSESLP_					0	0	0		ENSG00000124260|ENST00000370323|MAGEA10	ENSG00000124260|ENST00000370323|MAGEA10	ENSG00000124260|ENST00000370323|MAGEA10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	430.2106018066406	2	429.216183	856.417813	1.2336	0.0005295	-0.23045	-9.8912E-05	1.0032	0.00043059	429.216110355979	113.97	0.70561	112.52	112.29	112.99	-1.4461					22	13	2	0	0	0	0.028476	1	10566	10566		26.796	2.5934	1	30617			33627	3643	27699	27724	37004	37004					-0.01613889501743415
LPDSRVGKL	9	Unmodified	_LPDSRVGKL_					0	0	0			REV__nc|ENSG00000100241|O95248|SBF1	REV__nc|ENSG00000100241|O95248|SBF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.7962646484375	2	492.795466	983.57638	0.36921	0.00018195	-1.3709	-0.00067559	-1.0017	-0.00049364	492.79468651326295	75.568	1.8138	72.629	72.112	73.926	-2.9389					93	37	3	0	0	0	0.38969	1	5992	5992		52.937	3.4952	1	958700	+		33628	17384	27700	27725	37005	37005					0.08393449197183145
LPDWPLER	8	Unmodified	_LPDWPLER_					0	0	0		ENSG00000183114|ENST00000332947|FAM43B	ENSG00000183114|ENST00000332947|FAM43B	ENSG00000183114|ENST00000332947|FAM43B	MULTI-SECPEP	OvCa9_classI_Rep2	2	512.810546875	2	513.274367	1024.53418	-0.1306	-6.7034E-05	0.37999	0.00019504	0.24939	0.00012801	513.2743842492141	93.717	0.98288	92.618	92.329	93.312	-1.0995					29	18	2	0	0	0	0.028476	1	8379	8379		76.847	13.54	1	47337			33629	8051	27701	27726	37006	37006					0.02289473788800933
LPEDSSMATFI	11	Unmodified	_LPEDSSMATFI_					0	0	0			REV__tr|A0A7D6W2L8|A0A7D6W2L8_9CLOTDUF262domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06605PE=4SV=1	REV__tr|A0A7D6W2L8|A0A7D6W2L8_9CLOTDUF262domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06605PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	404.90777587890625	3	404.193523	1209.55874	0.76606	0.00030964	-3.8648	-0.0015621	-3.0988	-0.0012525	404.1918500173729	54.354	0.61492	51.107	50.876	51.491	-3.2474					20	11	2	0	0	0	0.025767	1	3407	3407		24.232	4.2013	1	33657	+		33630	31901	27702	27727	37007	37007					-0.03765678910644965
LPEEHLKAI	9	Unmodified	_LPEEHLKAI_					0	0	0		ENSG00000168918|ENST00000445964|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;ENST00000496402.2_1_2:233990465-233995359:+|nuORF	ENSG00000168918|ENST00000445964|INPP5D	ENSG00000168918|ENST00000445964|INPP5D	MULTI-MSMS	OvCa9_classI_Rep3	3	525.3021240234375	2	525.303124	1048.5917	-0.72816	-0.00038251	0.33166	0.00017422	-0.3965	-0.00020828	525.3031092355825	73.955	2.581	71.468	71.024	73.605	-2.4873					119	51	3	0	0	0	0.14998	1	3663	3663		84.916	4.4609	1	1236500			33631	6956	27703	27728	37008	37008					0.06934315994362805
LPEEPAWDL	9	Unmodified	_LPEEPAWDL_					0	0	0		PPP1R3C|p.K182Nfs*19|1|0.04|ENSG00000119938|chr10:91630335-91630336|-/CA|frameshift_variant;PPP1R3C|p.N248Tfs*39|1|0.15|ENSG00000119938|chr10:91630138-91630138|T/-|frameshift_variant;ENSG00000119938|ENST00000238994|PPP1R3C	PPP1R3C|p.K182Nfs*19|1|0.04|ENSG00000119938|chr10:91630335-91630336|-/CA|frameshift_variant	PPP1R3C|p.K182Nfs*19|1|0.04|ENSG00000119938|chr10:91630335-91630336|-/CA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.8379516601562	2	535.263665	1068.51278	2.4137	0.0012919	4.3137	0.0023089	6.7273	0.0036009	535.7670354463254	84.709	0.57759	84.709	84.345	84.923	0					21	13	3	0	0	0	0.027462	1	8856	8856		45.952	1.8352	1	294540			33632	3406	27704	27729	37009	37009					-0.018739560305675695
LPEHEINRA	9	Unmodified	_LPEHEINRA_					0	0	0		ENSG00000115808|ENST00000263918|STRN;nc|ENSG00000115808|O43815-2|STRN	ENSG00000115808|ENST00000263918|STRN	ENSG00000115808|ENST00000263918|STRN	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.86328125	2	539.78563	1077.55671	-0.31395	-0.00016946	2.3222	0.0012535	2.0082	0.001084	539.7869280294525	136.26	0.39459	135.15	135	135.39	-1.1076					12	7	2	0	0	0	0.027462	1	11044	11044		44.117	23.28	1	13186			33633	3128	27705	27730	37010	37010					0.02103073186435722
LPEKNKEML	9	Unmodified	_LPEKNKEML_					0	0	0		ENST00000506020.5_1_4:148867718-148993229:+|nuORF;ENSG00000071205|ENST00000336498|ARHGAP10	ENST00000506020.5_1_4:148867718-148993229:+|nuORF	ENST00000506020.5_1_4:148867718-148993229:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	551.3018798828125	2	551.302267	1100.58998	1.4681	0.00080935	-2.2914	-0.0012633	-0.82337	-0.00045393	551.3008705568828	115.15	3.1895	115.15	114.7	117.88	0					161	68	5	0	0	0	0.31747	1	13134	13134		60.972	0	1	1919600			33634	1448	27706	27731	37011	37011					0.04370938914121325
LPELKQGARE	10	Unmodified	_LPELKQGARE_					0	0	0			REV__SEL1L3-BHLHE41|1|fusion	REV__SEL1L3-BHLHE41|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	570.8218994140625	2	570.822212	1139.62987	-1.1076	-0.00063223	-0.082127	-4.688E-05	-1.1897	-0.00067911	570.8223947094398	83.611	2.5243	82.012	81.415	83.939	-1.5988					150	50	5	0	0	0	0.62299	1	7170	7170		39.253	0	1	939080	+		33635	29351	27707	27732	37012	37012					0.06564201909031908
LPELLSQNI	9	Unmodified	_LPELLSQNI_					0	0	0			REV__CON__Q6IFZ6	REV__CON__Q6IFZ6	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.79443359375	2	513.795132	1025.57571	0.6265	0.00032189	-0.85306	-0.0004383	-0.22656	-0.00011641	513.7946041614833	128.88	1.2853	127.42	127.15	128.44	-1.4565					55	25	4	0	0	0	0.61208	1	12317	12317		30.504	5.0535	1	193110	+	+	33636	16218	27708	27733	37013	37013					0.06394609757489889
LPELPLSPL	9	Unmodified	_LPELPLSPL_					0	0	0		chr17:44926186-44926414|419|23.35|0.86|4.76|-|2|KIF18B,KIF18B|1;ENSG00000186185|ENST00000593135|KIF18B	chr17:44926186-44926414|419|23.35|0.86|4.76|-|2|KIF18B,KIF18B|1	chr17:44926186-44926414|419|23.35|0.86|4.76|-|2|KIF18B,KIF18B|1	MULTI-MSMS	OvCa99_classI_Rep5	1	489.79754638671875	2	489.797143	977.579734	1.2948	0.00063421	0.2894	0.00014175	1.5842	0.00077595	489.7972358221059	149.18	0.82942	149.18	148.72	149.55	0					35	16	4	0	0	0	0.29717	1	17460	17460		63.306	0	1	89241			33637	387	27709	27734	37014	37014					0.09004699251204329
LPELQTHVL	9	Unmodified	_LPELQTHVL_					0	0	0			REV__ENSG00000198700|ENST00000361565|IPO9	REV__ENSG00000198700|ENST00000361565|IPO9	MULTI-MSMS	OvCa9_classI_Rep3	3	525.3029174804688	2	525.303124	1048.5917	-0.72816	-0.00038251	0.33166	0.00017422	-0.3965	-0.00020828	525.3031092355825	73.955	2.581	71.468	71.024	73.605	-2.4873					119	51	3	0	0	0	0.053172	5	3642	3621;3624;3630;3642;3648		116.9	15.303	1	1236500	+		33638	23046	27710	27735	37015;37016;37017;37018;37019	37018					0.06934315994362805
LPELQTHVL	9	Unmodified	_LPELQTHVL_					0	0	0			REV__ENSG00000198700|ENST00000361565|IPO9	REV__ENSG00000198700|ENST00000361565|IPO9	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.3045654296875	2	525.303124	1048.5917	-0.67339	-0.00035373	0.16317	8.5712E-05	-0.51022	-0.00026802	525.3030438677297	74.889	1.7859	71.658	71.24	73.026	-3.2308					80	36	3	0	0	0	0.036687	3	5883	5859;5883;5907		129.68	21.595	1	1217400	+		33639	23046	27710	27735	37020;37021;37022	37021					0.06934315994362805
LPELRRSF	8	Unmodified	_LPELRRSF_					0	0	0			REV__ENSG00000112249|ENST00000369162|ASCC3	REV__ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.8008728027344	2	509.295633	1016.57671	0.8333	0.00042439	3.899	0.0019858	4.7323	0.0024101	509.29647024797856	97.044	1.4076	94.619	94.067	95.474	-2.4256					91	27	4	0	0	0	0.72134	1	8561	8561		39.021	3.4032	1	524980	+		33640	18089	27711	27736	37023	37023					0.06908868917037125
LPENIEDIL	9	Unmodified	_LPENIEDIL_					0	0	0		tr|A0A7D6ZXN7|A0A7D6ZXN7_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13875PE=4SV=1	tr|A0A7D6ZXN7|A0A7D6ZXN7_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13875PE=4SV=1	tr|A0A7D6ZXN7|A0A7D6ZXN7_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13875PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	528.2843627929688	2	528.284597	1054.55464	-1.7589	-0.00092921	1.7414	0.00091994	-0.017547	-9.2698E-06	528.2853995863809	141.02	1.0894	140.79	140.48	141.57	-0.22697					51	21	4	0	0	0	0.38969	1	14132	14132		52.937	1.6012	1	215050			33641	35886	27712	27737	37024	37024					0.029545996579372513
LPENIGLYF	9	Unmodified	_LPENIGLYF_					0	0	0			REV__tr|A0A553STT7|A0A553STT7_NIACIClassAbeta-lactamase-relatedserinehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05735PE=4SV=1	REV__tr|A0A553STT7|A0A553STT7_NIACIClassAbeta-lactamase-relatedserinehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05735PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.8335571289062	2	533.2844	1064.55425	0.10434	5.5645E-05	-4.1474	-0.0022117	-4.043	-0.0021561	533.282134807812	62.275	0.87262	62.275	61.869	62.741	0					37	20	2	0	0	0	0.027448	1	5503	5503		63.306	4.5243	1	1068000	+		33642	31010	27713	27738	37025	37025					0.024552247287601858
LPERRWILH	9	Unmodified	_LPERRWILH_					0	0	0		ENST00000374469.5_1_9:113192714-113194268:-|nuORF	ENST00000374469.5_1_9:113192714-113194268:-|nuORF	ENST00000374469.5_1_9:113192714-113194268:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	610.353759765625	2	610.356557	1218.69856	1.2423	0.00075824	-4.4156	-0.0026951	-3.1733	-0.0019368	610.3536703395838	34.948	0.95424	32.117	31.853	32.808	-2.831					49	18	4	0	0	0	0.56889	1	1083	1083		35.618	8.571	1	158240			33643	11036	27714	27739	37026	37026					0.0979591099942354
LPERRWILH	9	Unmodified	_LPERRWILH_					0	0	0		ENST00000374469.5_1_9:113192714-113194268:-|nuORF	ENST00000374469.5_1_9:113192714-113194268:-|nuORF	ENST00000374469.5_1_9:113192714-113194268:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	610.356557	1218.69856	-2.5031	-0.0015278	-0.79346	-0.0004843	-3.2966	-0.0020121	610.3559591005574	35.209	0.64399	32.5	32.306	32.95	-2.7097	0.19121	0.0029571	NaN	35.618	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39240			33644	11036	27714	27739							0.0979591099942354
LPETIQLPEP	10	Unmodified	_LPETIQLPEP_					0	0	0			REV__tr|A0A553STC1|A0A553STC1_NIACIAcetoacetatedecarboxylaseOS=NialliacirculansOX=1397GN=CEQ21_04565PE=4SV=1	REV__tr|A0A553STC1|A0A553STC1_NIACIAcetoacetatedecarboxylaseOS=NialliacirculansOX=1397GN=CEQ21_04565PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	568.8172607421875	2	568.813522	1135.61249	1.6973	0.00096545	0.36228	0.00020607	2.0596	0.0011715	569.3143712532918	125.17	0.60088	125.17	124.79	125.39	0					21	14	2	0	0	0	0.3976	1	14468	14468		68.787	0.30212	1	262470	+		33645	30948	27715	27740	37027	37027					0.05010861583400583
LPEVKVKII	9	Unmodified	_LPEVKVKII_					0	0	0			REV__ENSG00000021852|ENST00000371237|C8B	REV__ENSG00000021852|ENST00000371237|C8B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.7930297851562	2	519.84971	1037.68487	-1.9518	-0.0010146	-2.6596	-0.0013826	-4.6114	-0.0023972	519.8498257863059	87.615	1.7122	84.988	84.649	86.361	-2.6269					91	33	4	0	0	0	0.027462	1	7443	7443		37.159	0	1	518820	+		33646	16551	27716	27741	37028	37028					0.16753240447633289
LPEVLKFAE	9	Unmodified	_LPEVLKFAE_					0	0	0		tr|A0A7D6ZEA7|A0A7D6ZEA7_9CLOTFlavodoxin-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12910PE=4SV=1	tr|A0A7D6ZEA7|A0A7D6ZEA7_9CLOTFlavodoxin-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12910PE=4SV=1	tr|A0A7D6ZEA7|A0A7D6ZEA7_9CLOTFlavodoxin-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12910PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	523.8407592773438	2	523.30005	1044.58555	-0.16722	-8.7504E-05	-0.32984	-0.00017261	-0.49706	-0.00026011	523.299486422642	103.43	1.4158	102	101.29	102.71	-1.4347					55	26	4	0	0	0	0.027441	1	7081	7081		49.442	0	1	148800			33647	35479	27717	27742	37029	37029					0.06503797762843533
LPFCLFPDL	9	Unmodified	_LPFCLFPDL_					0	0	0			REV__ENST00000537871.1_1_11:63313805-63313877:+|nuORF	REV__ENST00000537871.1_1_11:63313805-63313877:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.3585205078125	2	532.777896	1063.54124	1.6864	0.00089848	0.8525	0.00045419	2.5389	0.0013527	532.7779506853502	135.6	0.37337	135.6	135.41	135.78	0					11	7	2	0	0	0	0.027462	1	15813	15813		6.7355	0	1	41232	+		33648	27316	27718	27743	37030	37030					0.012010703449959692
LPFCRGKGLSR	11	Unmodified	_LPFCRGKGLSR_					0	0	0			REV__ENST00000449684.6_1_2:109237713-109237827:+|nuORF	REV__ENST00000449684.6_1_2:109237713-109237827:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	617.3526000976562	2	617.347874	1232.6812	0.90944	0.00056144	4.2763	0.0026399	5.1857	0.0032014	617.3503798864875	156.47	1.4576	156.47	156.04	157.5	0					89	28	5	0	0	0	0.69099	1	18362	18362		32.751	2.1817	1	1303300	+		33649	25951	27719	27744	37031	37031					0.07416247402102272
LPFFIRSVL	9	Unmodified	_LPFFIRSVL_					0	0	0			REV__ENST00000465878.6_2_16:57792155-57792449:-|nuORF	REV__ENST00000465878.6_2_16:57792155-57792449:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	546.3370361328125	2	546.334227	1090.6539	0.64385	0.00035176	2.3032	0.0012583	2.947	0.0016101	546.3354472939371	141.74	0.59918	141.74	141.44	142.04	0					27	11	3	0	0	0	0.56889	1	16572	16572		35.618	2.8059	1	133740	+		33650	26179	27720	27745	37032	37032					0.11220087133369816
LPFFRILIR	9	Unmodified	_LPFFRILIR_					0	0	0			REV__ENSG00000099977|ENST00000398344|DDT	REV__ENSG00000099977|ENST00000398344|DDT	MULTI-SECPEP	OvCa9_classI_Rep4_	4	587.836181640625	2	587.876594	1173.73863	-1.1773	-0.00069213	3.4526	0.0020297	2.2753	0.0013376	587.8780499403246	53.569	0.35559	50.361	50.252	50.607	-3.208					9	6	2	0	0	0	0.027462	1	3301	3301		19.36	1.995	1	11135	+		33651	17346	27721	27746	37033	37033					0.15871457669959455
LPFGKIPI	8	Unmodified	_LPFGKIPI_					0	0	0		HPGDS|p.L54Wfs*12|1|0.82|ENSG00000163106|chr4:94317938-94317938|A/-|frameshift_variant;ENSG00000163106|ENST00000295256|HPGDS;ENST00000514774.1_1_4:95225018-95255708:-|nuORF	HPGDS|p.L54Wfs*12|1|0.82|ENSG00000163106|chr4:94317938-94317938|A/-|frameshift_variant	HPGDS|p.L54Wfs*12|1|0.82|ENSG00000163106|chr4:94317938-94317938|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.7754211425781	2	442.783839	883.553125	0.41776	0.00018498	3.6096	0.0015983	4.0274	0.0017833	442.7851927535796	114.82	0.36702	113.42	113.1	113.46	-1.3977					9	6	2	0	0	0	0.028476	1	10672	10672		20.482	1.1219	1	13190			33652	6267	27722	27747	37034	37034					0.10669055150515305
LPFGKIPI	8	Unmodified	_LPFGKIPI_					0	0	0		HPGDS|p.L54Wfs*12|1|0.82|ENSG00000163106|chr4:94317938-94317938|A/-|frameshift_variant;ENSG00000163106|ENST00000295256|HPGDS;ENST00000514774.1_1_4:95225018-95255708:-|nuORF	HPGDS|p.L54Wfs*12|1|0.82|ENSG00000163106|chr4:94317938-94317938|A/-|frameshift_variant	HPGDS|p.L54Wfs*12|1|0.82|ENSG00000163106|chr4:94317938-94317938|A/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	442.783839	883.553125	2.0635	0.00091369	2.2885	0.0010133	4.352	0.001927	442.7846306409583	113.41	0.54459	113.29	113.07	113.61	-0.12174	-0.064703	-0.00054341	NaN	42.474	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12609			33653	6267	27722	27747							0.10669055150515305
LPFGPFKELR	10	Unmodified	_LPFGPFKELR_					0	0	0		ENSG00000155016|ENST00000332884|CYP2U1	ENSG00000155016|ENST00000332884|CYP2U1	ENSG00000155016|ENST00000332884|CYP2U1	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.5635070800781	3	401.901003	1202.68118	0.31437	0.00012634	3.8706	0.0015556	4.1849	0.0016819	401.9020134299831	44.06	0.97116	44.06	43.823	44.795	0					52	21	4	0	0	0	0.026665	1	2999	2999		46.457	1.4346	1	4032300			33654	5764	27723	27748	37035	37035					0.08794570673740054
LPFIRGHVDI	10	Unmodified	_LPFIRGHVDI_					0	0	0			REV__tr|A0A553SFV0|A0A553SFV0_NIACIDUF3267domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09555PE=4SV=1	REV__tr|A0A553SFV0|A0A553SFV0_NIACIDUF3267domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09555PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	583.8157958984375	2	583.837665	1165.66078	0.22605	0.00013197	-3.9557	-0.0023095	-3.7297	-0.0021775	584.33622099242	81.034	0.50122	79.385	79.164	79.665	-1.6485					18	9	3	0	0	0	0.026849	1	6868	6868		40.778	16.259	1	12641	+		33655	29625	27724	27749	37036	37036					0.0845740001395825
LPFLFLKV	8	Unmodified	_LPFLFLKV_					0	0	0			REV__tr|A0A7D6ZIL3|A0A7D6ZIL3_9CLOTMATEfamilyeffluxtransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_07515PE=4SV=1	REV__tr|A0A7D6ZIL3|A0A7D6ZIL3_9CLOTMATEfamilyeffluxtransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_07515PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.7729797363281	2	488.815139	975.615725	1.4895	0.0007281	-3.3813	-0.0016528	-1.8918	-0.00092473	488.81326119079745	78.841	0.4104	78.841	78.668	79.079	0					15	9	2	0	0	0	0.028476	1	8006	8006		26.796	0	1	225380	+		33656	32061	27725	27750	37037	37037					0.12694201218710077
LPFLGFHLLA	10	Unmodified	_LPFLGFHLLA_					0	0	0			REV__ENST00000291295.13_1_19:47112728-47112953:+|nuORF	REV__ENST00000291295.13_1_19:47112728-47112953:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	564.80615234375	2	564.334227	1126.6539	-0.27815	-0.00015697	4.3611	0.0024611	4.083	0.0023042	564.3369029357602	94.584	0.68685	93.484	93.214	93.901	-1.0995					24	13	3	0	0	0	0.027007	1	8466	8466		26.796	13.984	1	43512	+		33657	24153	27726	27751	37038	37038					0.09564087133389876
LPFLLLPQ	8	Unmodified	_LPFLLLPQ_					0	0	0		HERVH-int_dup93|chr1:54900195-54903183:-|1.1315455096136964|0.040738276592419|4.8|412.0|4|1|sense;chr1:54883773-54901046|198|19.12|0.0|20.87|-|1|TE_info:HERVH-int,HERVH-int_dup93,ERV1,LTR,donor,-,54901046,54903183|DHCR24,None|5	HERVH-int_dup93|chr1:54900195-54903183:-|1.1315455096136964|0.040738276592419|4.8|412.0|4|1|sense	HERVH-int_dup93|chr1:54900195-54903183:-|1.1315455096136964|0.040738276592419|4.8|412.0|4|1|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	470.81207275390625	2	470.796946	939.57934	0.88461	0.00041647	1.1576	0.000545	2.0422	0.00096147	470.7974400732414	66.089	0.29723	63.393	63.22	63.517	-2.6958					7	5	2	0	0	0	0.028476	1	5103	5103		28.254	5.2176	1	10276			33658	261	27727	27752	37039	37039					0.10713324321989148
LPFLNTIFY	9	Unmodified	_LPFLNTIFY_					0	0	0		ENST00000526194.5_1_1:21560049-21616919:-|nuORF;ECE1|p.T697Pfs*6|1|0.03|ENSG00000117298|chr1:21221793-21221794|GT/-|frameshift_variant;nc|ENSG00000117298|P42892-3|ECE1;nc|ENSG00000117298|P42892-2|ECE1;nc|ENSG00000117298|P42892-4|ECE1;ENSG00000117298|ENST00000374893|ECE1	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	ENST00000526194.5_1_1:21560049-21616919:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	564.3091430664062	2	564.310418	1126.60628	-0.64093	-0.00036169	-3.1776	-0.0017932	-3.8186	-0.0021549	564.3086346308005	121.22	1.0377	121.03	120.61	121.64	-0.19718					60	20	5	0	0	0	0.40667	1	11722	11722		51.335	1.8939	1	328140			33659	777	27728	27753	37040	37040					0.04804388142520111
LPFLQFCY	8	Unmodified	_LPFLQFCY_					0	0	0		ENST00000329841.9_1_15:101455882-101455930:+|nuORF	ENST00000329841.9_1_15:101455882-101455930:+|nuORF	ENST00000329841.9_1_15:101455882-101455930:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.2820434570312	2	515.756964	1029.49937	1.0198	0.00052599	-4.4046	-0.0022717	-3.3848	-0.0017457	516.255486729913	106.61	0.26033	105.34	105.22	105.48	-1.267					5	4	2	0	0	0	0.028476	1	7534	7534		31.579	3.6966	1	9020.3			33660	10431	27729	27754	37041	37041					-0.014194853435128607
LPFLRITSL	9	Unmodified	_LPFLRITSL_					0	0	0		ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3;nc|ENSG00000144357|Q6ZT12-2|UBR3;ENST00000430321.5_1_2:170917624-170929931:+|nuORF;nc|ENSG00000144357|Q6ZT12-3|UBR3	ENSG00000144357|ENST00000272793|UBR3	ENSG00000144357|ENST00000272793|UBR3	MULTI-MSMS	OvCa9_classI_Rep2	2	530.3307495117188	2	530.331685	1058.64882	0.10186	5.402E-05	-0.28124	-0.00014915	-0.17938	-9.5129E-05	530.331407055981	130.5	1.1434	130.27	129.96	131.1	-0.22697					41	22	3	0	0	0	0.1944	1	12838	12838		77.318	10.888	1	159590			33661	5144	27730	27755	37042	37042					0.12183783270756976
LPFLSIGKDLY	11	Unmodified	_LPFLSIGKDLY_					0	0	0			REV__ENST00000381962.3_1_20:627801-627969:-|nuORF	REV__ENST00000381962.3_1_20:627801-627969:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	632.4310913085938	2	633.360639	1264.70673	-6.5049	-0.00412	2.7985	0.0017724	-3.7065	-0.0023475	633.3630532071279	164.89	0.12762	163.48	163.39	163.51	-1.4083					8	4	3	0	0	0	0.025853	1	14379	14379		14.865	8.9438	1	12826	+		33662	25208	27731	27756	37043	37043					0.08496000405534687
LPFQSVNYLM	10	Unmodified	_LPFQSVNYLM_					0	0	0		nc|ENSG00000112038|P35372-15|OPRM1;nc|ENSG00000112038|P35372-12|OPRM1;nc|ENSG00000112038|P35372-14|OPRM1;nc|ENSG00000112038|P35372-13|OPRM1;nc|ENSG00000112038|P35372-11|OPRM1;nc|ENSG00000112038|P35372-2|OPRM1;nc|ENSG00000112038|P35372-8|OPRM1;ENSG00000112038|ENST00000330432|OPRM1;nc|ENSG00000112038|P35372-6|OPRM1;nc|ENSG00000112038|P35372-4|OPRM1;nc|ENSG00000112038|P35372-7|OPRM1;nc|ENSG00000112038|P35372-5|OPRM1;nc|ENSG00000112038|P35372-9|OPRM1;nc|ENSG00000112038|P35372-3|OPRM1;nc|ENSG00000112038|P35372-10|OPRM1	nc|ENSG00000112038|P35372-15|OPRM1	nc|ENSG00000112038|P35372-15|OPRM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	606.2732543945312	2	606.310092	1210.60563	-0.056146	-3.4042E-05	-4.1051	-0.002489	-4.1612	-0.002523	606.307596036494	35.477	0.22698	35.477	35.339	35.566	0					6	4	2	0	0	0	0.026635	1	1798	1798		47.657	3.5405	1	12681			33663	2871	27732	27757	37044	37044					0.008752254311502838
LPFSALRA	8	Unmodified	_LPFSALRA_					0	0	0		ENSG00000170128|ENST00000304244|GPR25	ENSG00000170128|ENST00000304244|GPR25	ENSG00000170128|ENST00000304244|GPR25	MULTI-MSMS	OvCa99_classI_Rep5	1	437.7616882324219	2	437.760895	873.507237	2.529	0.0011071	-0.31002	-0.00013571	2.2189	0.00097136	437.7606104908485	107.12	0.841	107.12	106.81	107.65	0					45	19	3	0	0	0	0.56113	1	12053	12053		71.378	0	1	2253400			33664	7075	27733	27758	37045	37045					0.06542409968267293
LPFVLHSL	8	Unmodified	_LPFVLHSL_					0	0	0		ENSG00000178623|ENST00000407714|GPR35;nc|ENSG00000178623|Q9HC97-2|GPR35	ENSG00000178623|ENST00000407714|GPR35	ENSG00000178623|ENST00000407714|GPR35	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.2781066894531	2	463.278921	924.543289	-0.39295	-0.00018205	-4.4717	-0.0020716	-4.8646	-0.0022537	463.27682376212437	75.898	2.0127	72.959	72.497	74.51	-2.9389					92	41	4	0	0	0	0.59103	1	5997	5997		65.897	5.7792	1	1343400			33665	7767	27734	27759	37046	37046					0.0779986714513825
LPFVLWGLML	10	Unmodified	_LPFVLWGLML_					0	0	0			REV__ENST00000548984.1_1_12:53691573-53691735:+|nuORF	REV__ENST00000548984.1_1_12:53691573-53691735:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	594.82421875	2	594.846113	1187.67767	-0.61258	-0.00036439	-0.60881	-0.00036215	-1.2214	-0.00072654	594.8457883625588	86.962	0.9141	84.785	84.431	85.345	-2.1768					27	17	2	0	0	0	0.026839	1	5178	5178		44.531	0	1	25726	+		33666	27451	27735	27760	37047	37047					0.09134184575532345
LPFYLESWDHY	11	Unmodified	_LPFYLESWDHY_					0	0	0			REV__tr|A0A553SLD9|A0A553SLD9_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_20440PE=4SV=1	REV__tr|A0A553SLD9|A0A553SLD9_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_20440PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	490.77484130859375	3	490.562715	1468.66632	-1.1597	-0.00056889	2.314	0.0011351	1.1543	0.00056625	490.56375309570166	91.215	0.20201	89.191	89.079	89.281	-2.0241					5	3	2	0	0	0	0.026113	1	5708	5708		30.569	16.483	1	10745	+		33667	30214	27736	27761	37048	37048					-0.049269659848960146
LPFYWFFF	8	Unmodified	_LPFYWFFF_					0	0	0			REV__ENST00000361915.7_2_1:100358140-100361902:+|nuORF	REV__ENST00000361915.7_2_1:100358140-100361902:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	583.8168334960938	2	583.789121	1165.56369	-1.9258	-0.0011242	1.5753	0.00091964	-0.35047	-0.0002046	583.789243592907	81.89	0.29927	79.594	79.385	79.684	-2.2963					7	5	2	0	0	0	0.028476	1	4590	4590		54.895	0	1	8538	+		33668	24869	27737	27762	37049	37049					-0.012469621950458532
LPGAGGAKH	9	Unmodified	_LPGAGGAKH_					0	0	0			REV__ENSG00000221869|ENST00000408965|CEBPD	REV__ENSG00000221869|ENST00000408965|CEBPD	MSMS	OvCa9_classI_Rep3	3	404.2319641113281	2	404.22722	806.439886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.66	1	129.53	129.03	130.03	-1.1249								0	0	0	0.24372	1	10376	10376		19.36	4.6959	1		+		33669	23345	27738	27763	37050	37050					0.02892379757327035
LPGARASSP	9	Unmodified	_LPGARASSP_					0	0	0		ENST00000342983.6_1_X:131351363-131351708:-|nuORF	ENST00000342983.6_1_X:131351363-131351708:-|nuORF	ENST00000342983.6_1_X:131351363-131351708:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	428.239013671875	2	428.237784	854.461016	0.61498	0.00026336	-0.72308	-0.00030965	-0.1081	-4.6292E-05	428.2373350133255	47.955	1.8924	44.847	44.237	46.129	-3.1077					76	36	3	0	0	0	0.55588	1	2631	2631		37.159	1.5408	1	507230			33670	10587	27739	27764	37051	37051					0.027963450661900424
LPGARQII	8	Unmodified	_LPGARQII_					0	0	0		tr|A0A553SRG3|A0A553SRG3_NIACIPyridoxamine5'-phosphateoxidasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01020PE=4SV=1	tr|A0A553SRG3|A0A553SRG3_NIACIPyridoxamine5'-phosphateoxidasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01020PE=4SV=1	tr|A0A553SRG3|A0A553SRG3_NIACIPyridoxamine5'-phosphateoxidasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01020PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	434.2756652832031	2	434.27417	866.533787	2.9701	0.0012898	-0.72993	-0.00031699	2.2401	0.00097282	434.273965664958	87.814	0.7084	87.814	87.546	88.255	0					34	16	4	0	0	0	0.59103	1	9313	9313		65.897	0	1	1260900			33671	34262	27740	27765	37052	37052					0.09518098859621205
LPGARQII	8	Unmodified	_LPGARQII_					0	0	0		tr|A0A553SRG3|A0A553SRG3_NIACIPyridoxamine5'-phosphateoxidasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01020PE=4SV=1	tr|A0A553SRG3|A0A553SRG3_NIACIPyridoxamine5'-phosphateoxidasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01020PE=4SV=1	tr|A0A553SRG3|A0A553SRG3_NIACIPyridoxamine5'-phosphateoxidasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01020PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	434.27417	866.533787	1.9173	0.00083262	-1.6402	-0.00071231	0.27703	0.00012031	434.27337525226307	89.386	0.79086	88.047	87.556	88.346	-1.3389	0.026313	-0.00086665	NaN	65.897	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82246			33672	34262	27740	27765							0.09518098859621205
LPGARQII	8	Unmodified	_LPGARQII_					0	0	0		tr|A0A553SRG3|A0A553SRG3_NIACIPyridoxamine5'-phosphateoxidasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01020PE=4SV=1	tr|A0A553SRG3|A0A553SRG3_NIACIPyridoxamine5'-phosphateoxidasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01020PE=4SV=1	tr|A0A553SRG3|A0A553SRG3_NIACIPyridoxamine5'-phosphateoxidasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01020PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	434.27417	866.533787	-0.13238	-5.7489E-05	0.21601	9.3806E-05	0.083627	3.6317E-05	434.2741456771195	90.163	0.82023	88.082	87.541	88.361	-2.0805	0.061675	0.00074559	NaN	65.897	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99086			33673	34262	27740	27765							0.09518098859621205
LPGARQII	8	Unmodified	_LPGARQII_					0	0	0		tr|A0A553SRG3|A0A553SRG3_NIACIPyridoxamine5'-phosphateoxidasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01020PE=4SV=1	tr|A0A553SRG3|A0A553SRG3_NIACIPyridoxamine5'-phosphateoxidasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01020PE=4SV=1	tr|A0A553SRG3|A0A553SRG3_NIACIPyridoxamine5'-phosphateoxidasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01020PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	434.27417	866.533787	0.59592	0.00025879	-0.59191	-0.00025705	0.0040021	1.738E-06	434.2737855346438	90.714	0.967	88.138	87.45	88.417	-2.575	0.11806	4.3875E-05	NaN	65.897	31	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93768			33674	34262	27740	27765							0.09518098859621205
LPGCPRGVDP	10	Unmodified	_LPGCPRGVDP_					0	0	0		ENSG00000104826|ENST00000649238|LHB	ENSG00000104826|ENST00000649238|LHB	ENSG00000104826|ENST00000649238|LHB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.33026123046875	2	505.758027	1009.5015	-1.6475	-0.00083326	-2.2124	-0.0011189	-3.86	-0.0019522	506.25881915041793	72.963	0.14555	69.567	69.446	69.591	-3.3961					4	2	2	0	0	0	0.026665	1	5631	5631		42.396	0	1	10014			33675	2395	27741	27766	37053	37053					-0.0028705660570267355
LPGEWRELL	9	Unmodified	_LPGEWRELL_					0	0	0			REV__ENSG00000174684|ENST00000311181|B4GAT1	REV__ENSG00000174684|ENST00000311181|B4GAT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.3253784179688	2	556.808574	1111.60259	1.2141	0.000676	0.13286	7.3975E-05	1.3469	0.00074998	556.8081467320197	124.31	0.92142	124.31	124.01	124.93	0					32	19	2	0	0	0	0.027426	1	14323	14323		47.657	6.8792	1	642190	+		33676	21846	27742	27767	37054	37054					0.051257183686630015
LPGGALVLRE	10	Unmodified	_LPGGALVLRE_					0	0	0			REV__nc|ENSG00000128928|P26440-2|IVD	REV__nc|ENSG00000128928|P26440-2|IVD	MULTI-MSMS	OvCa9_classI_Rep2	2	512.810546875	2	512.811116	1023.60768	-0.15487	-7.9419E-05	-0.46745	-0.00023971	-0.62232	-0.00031913	512.8108542790907	93.719	2.3712	92.619	92.123	94.494	-1.0995					128	46	6	0	0	0	0.13504	1	8379	8379		104.75	3.4939	1	1668800	+		33677	18879	27743	27768	37055	37055					0.09682022231265819
LPGGLRVL	8	Unmodified	_LPGGLRVL_					0	0	0		ENST00000534240.5_1_11:134123494-134128422:+|nuORF;ENST00000525961.1_1_11:134123494-134126611:+|nuORF;ENST00000534433.5_1_11:134123494-134128911:+|nuORF;nc|ENSG00000151498|Q9UKU7-2|ACAD8;ENSG00000151498|ENST00000281182|ACAD8	ENST00000534240.5_1_11:134123494-134128422:+|nuORF	ENST00000534240.5_1_11:134123494-134128422:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	412.7714538574219	2	412.771263	823.527973	-0.40706	-0.00016802	0.58545	0.00024166	0.17839	7.3634E-05	412.77137174330215	93.348	1.4663	91.386	91.079	92.545	-1.9617					64	28	3	0	0	0	0.69415	1	5990	5990		44.531	0	1	465000			33678	5559	27744	27769	37056	37056					0.1091500034793853
LPGGRKVTIK	10	Unmodified	_LPGGRKVTIK_					0	0	0		chr18:23950159-23952990|104|16.61|0.86|4.28|+|2|LAMA3,LAMA3|1	chr18:23950159-23952990|104|16.61|0.86|4.28|+|2|LAMA3,LAMA3|1	chr18:23950159-23952990|104|16.61|0.86|4.28|+|2|LAMA3,LAMA3|1	MULTI-MSMS	OvCa9_classI_Rep2	2	534.8477783203125	2	534.848033	1067.68151	-1.2741	-0.00068147	0.73507	0.00039315	-0.53906	-0.00028832	534.8483651209563	46.243	2.4803	43.534	43.048	45.529	-2.7097					129	49	4	0	0	0	0.49558	1	2776	2776		54.776	3.4409	1	907090			33679	398	27745	27770	37057	37057					0.1503799039360274
LPGGVGRAL	9	Unmodified	_LPGGVGRAL_					0	0	0		ENST00000528758.1_1_11:7507087-7531416:+|nuORF;ENSG00000183801|ENST00000329293|OLFML1	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	420.2593688964844	2	420.25852	838.502486	-0.63054	-0.00026499	0.73539	0.00030905	0.10485	4.4064E-05	420.2586970525478	74.791	1.0634	71.56	71.337	72.4	-3.2308					50	21	3	0	0	0	0.25214	1	5867	5867		68.485	2.5872	1	523140			33680	8108	27746	27771	37058	37058					0.07677525825499742
LPGGVGRAL	9	Unmodified	_LPGGVGRAL_					0	0	0		ENST00000528758.1_1_11:7507087-7531416:+|nuORF;ENSG00000183801|ENST00000329293|OLFML1	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	420.25852	838.502486	-0.010428	-4.3825E-06	0.16911	7.1072E-05	0.15869	6.6689E-05	420.258449352519	73.743	1.883	71.343	70.687	72.57	-2.3999	-0.02568	2.0211E-06	NaN	68.485	74	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173450			33681	8108	27746	27771							0.07677525825499742
LPGGVGRAL	9	Unmodified	_LPGGVGRAL_					0	0	0		ENST00000528758.1_1_11:7507087-7531416:+|nuORF;ENSG00000183801|ENST00000329293|OLFML1	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	420.25852	838.502486	0.51413	0.00021607	-0.24166	-0.00010156	0.27247	0.00011451	420.25828080768736	73.691	1.3389	71.203	70.925	72.264	-2.4873	-0.16537	-0.00034324	NaN	68.485	59	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243410			33682	8108	27746	27771							0.07677525825499742
LPGHPLYTYG	10	Unmodified	_LPGHPLYTYG_					0	0	0		ENSG00000183779|ENST00000331569|ZNF703	ENSG00000183779|ENST00000331569|ZNF703	ENSG00000183779|ENST00000331569|ZNF703	MULTI-MSMS	OvCa9_classI_Rep3	3	559.287109375	2	559.287474	1116.5604	1.8335	0.0010255	-2.3972	-0.0013407	-0.56374	-0.00031529	559.285935160322	57.961	2.4261	54.834	53.92	56.346	-3.1264					105	62	3	0	0	0	0.76627	1	1766	1766		23.042	0.46283	1	45402			33683	8106	27747	27772	37059	37059					0.006777429603062046
LPGHVPSLK	9	Unmodified	_LPGHVPSLK_					0	0	0			REV__HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|74|2|sense	REV__HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|74|2|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	474.284912109375	2	474.287277	946.560001	-0.27371	-0.00012982	-3.8981	-0.0018488	-4.1718	-0.0019787	474.2851821847887	24.059	0.30083	24.059	23.937	24.237	0					11	5	3	0	0	0	0.69123	1	408	408		20.947	1.587	1	64986	+		33684	28245	27748	27773	37060	37060					0.08458368031097052
LPGIGISAFV	10	Unmodified	_LPGIGISAFV_					0	0	0		tr|A0A553SI74|A0A553SI74_NIACIHAMPdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14325PE=3SV=1	tr|A0A553SI74|A0A553SI74_NIACIHAMPdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14325PE=3SV=1	tr|A0A553SI74|A0A553SI74_NIACIHAMPdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14325PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	487.29022216796875	2	487.289485	972.564418	0.99443	0.00048458	0.5508	0.0002684	1.5452	0.00075298	487.28973993505514	155.01	1.2668	155.01	154.62	155.89	0					51	24	4	0	0	0	0.41846	1	18150	18150		65.803	4.8312	1	235890			33685	33353	27749	27774	37061	37061					0.07703832454001258
LPGIGVQGPP	10	Unmodified	_LPGIGVQGPP_					0	0	0		nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5;ENST00000483338.1_1_X:107826116-107869594:+|nuORF;COL4A5|p.G869Efs*6|1|0.06|ENSG00000188153|chrX:108620350-108620350|C/-|frameshift_variant	nc|ENSG00000188153|P29400|COL4A5	nc|ENSG00000188153|P29400|COL4A5	MULTI-MSMS	OvCa9_classI_Rep2	2	467.769287109375	2	467.77146	933.528367	0.35334	0.00016528	-3.454	-0.0016157	-3.1006	-0.0014504	467.76972173276937	30.873	0.8863	28.163	27.903	28.789	-2.7097					36	17	3	0	0	0	0.64063	1	881	881		37.159	8.9048	1	69508			33686	8453	27750	27775	37062	37062					0.05894375277136987
LPGKGRGVPLR	11	Unmodified	_LPGKGRGVPLR_					0	0	0		ENST00000341865.8_1_6:42073427-42073679:-|nuORF	ENST00000341865.8_1_6:42073427-42073679:-|nuORF	ENST00000341865.8_1_6:42073427-42073679:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	576.3541259765625	2	575.364382	1148.71421	-0.43665	-0.00025123	0.010736	6.177E-06	-0.42591	-0.00024505	575.3642689038578	71.966	1.0438	69.459	69.174	70.218	-2.5071					32	19	2	0	0	0	0.02567	1	5781	5781		71.877	32.625	1	53367			33687	10572	27751	27776	37063	37063					0.1458019751644315
LPGLCHGK	8	Unmodified	_LPGLCHGK_					0	0	0		ENSG00000182606|ENST00000327628|TRAK1;TRAK1|p.P794Hfs*26|1|0.37|ENSG00000182606|chr3:42223253-42223253|C/-|frameshift_variant;TRAK1|p.R362Lfs*18|1|0.06|ENSG00000182606|chr3:42194912-42194913|-/T|frameshift_variant;TRAK1|p.Y363Dfs*25|1|0.06|ENSG00000182606|chr3:42194913-42194914|-/AGATTACAGCTGTAAGCCATCATTC|frameshift_variant	ENSG00000182606|ENST00000327628|TRAK1	ENSG00000182606|ENST00000327628|TRAK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.7042541503906	2	412.725998	823.437443	0.91151	0.0003762	3.3495	0.0013824	4.261	0.0017586	412.72729052952945	30.962	0.29458	30.962	30.781	31.076	0					8	5	2	0	0	0	0.028476	1	1236	1236		21.702	7.0382	1	31610			33688	8013	27752	27777	37064	37064					0.01866208028013716
LPGLPSAATST	11	Unmodified	_LPGLPSAATST_					0	0	0			REV__ENSG00000237330|ENST00000453464|RNF223	REV__ENSG00000237330|ENST00000453464|RNF223	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.830322265625	2	507.776939	1013.53933	-0.39189	-0.00019899	1.5902	0.00080747	1.1983	0.00060847	507.7772086737841	66.743	0.5901	63.252	63	63.59	-3.4902					16	11	2	0	0	0	0.02538	1	4859	4859		30.318	8.6154	1	25524	+		33689	23417	27753	27778	37065	37065					0.033097328607595955
LPGMIERK	8	Unmodified	_LPGMIERK_					0	0	0		tr|A0A553SJG3|A0A553SJG3_NIACI3-ketoacyl-ACPreductaseOS=NialliacirculansOX=1397GN=CEQ21_16505PE=3SV=1	tr|A0A553SJG3|A0A553SJG3_NIACI3-ketoacyl-ACPreductaseOS=NialliacirculansOX=1397GN=CEQ21_16505PE=3SV=1	tr|A0A553SJG3|A0A553SJG3_NIACI3-ketoacyl-ACPreductaseOS=NialliacirculansOX=1397GN=CEQ21_16505PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.27227783203125	2	472.273312	942.532072	-0.98681	-0.00046604	-2.7307	-0.0012897	-3.7175	-0.0017557	472.2718773301271	107.41	1.1901	105.53	105.22	106.41	-1.8785					53	23	3	0	0	0	0.65582	1	9802	9802		52.299	2.8576	1	352760			33690	33499	27754	27779	37066	37066					0.05850721779347623
LPGNVLKE	8	Unmodified	_LPGNVLKE_					0	0	0		ENST00000296564.8_2_5:5469036-5469069:+|nuORF	ENST00000296564.8_2_5:5469036-5469069:+|nuORF	ENST00000296564.8_2_5:5469036-5469069:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	435.2557067871094	2	435.258185	868.501818	0.10798	4.7E-05	1.6968	0.00073854	1.8048	0.00078554	435.25880813398544	50.717	1.8124	50.717	49.856	51.669	0					108	41	4	0	0	0	0.50674	2	3848	3848;3870		76.847	5.5509	1	2294500			33691	10140	27755	27780	37067;37068	37067					0.062306863857997996
LPGPHLEPSCL	11	Unmodified	_LPGPHLEPSCL_					0	0	0		ENSG00000006062|ENST00000344686|MAP3K14	ENSG00000006062|ENST00000344686|MAP3K14	ENSG00000006062|ENST00000344686|MAP3K14	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.3206787109375	2	581.799891	1161.58523	1.4083	0.00081933	-0.7005	-0.00040755	0.70777	0.00041178	581.7994613744822	125.95	0.37467	125.95	125.81	126.18	0					13	7	2	0	0	0	0.025746	1	14576	14576		32.812	17.479	1	234130			33692	870	27756	27781	37069	37069					0.010900547713617925
LPGPHTSLLL	10	Unmodified	_LPGPHTSLLL_					0	0	0		nc|ENSG00000168026|Q8NDW8-6|TTC21A;nc|ENSG00000168026|Q8NDW8-5|TTC21A;ENSG00000168026|ENST00000683103|TTC21A;nc|ENSG00000168026|Q8NDW8|TTC21A;nc|ENSG00000168026|Q8NDW8-7|TTC21A;ENST00000471025.1_1_3:39170643-39171861:+|nuORF	nc|ENSG00000168026|Q8NDW8-6|TTC21A	nc|ENSG00000168026|Q8NDW8-6|TTC21A	MULTI-MSMS	OvCa99_classI_Rep5	1	524.3142700195312	2	524.313492	1046.61243	0.4244	0.00022252	1.6075	0.00084284	2.0319	0.0010654	524.3142620632755	158.73	0.48308	158.73	158.51	158.99	0					22	9	3	0	0	0	0.50656	1	18598	18598		53.351	3.3269	1	131120			33693	6865	27757	27782	37070	37070					0.09098906374060789
LPGPPWPLLL	10	Unmodified	_LPGPPWPLLL_					0	0	0		ENST00000444995.7_1_22:25777435-25801250:-|nuORF	ENST00000444995.7_1_22:25777435-25801250:-|nuORF	ENST00000444995.7_1_22:25777435-25801250:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.2819213867188	2	551.836603	1101.65865	0.39134	0.00021595	-0.88541	-0.0004886	-0.49407	-0.00027265	551.8360907073567	161.06	1.2597	161.06	160.4	161.66	0					40	24	2	0	0	0	0.027007	1	18847	18847		26.796	0	1	31071			33694	11967	27758	27783	37071	37071					0.11188971276146731
LPGPRSLLHLL	11	Unmodified	_LPGPRSLLHLL_					0	0	0		ENST00000418386.2_1_6:31540090-31540530:+|nuORF	ENST00000418386.2_1_6:31540090-31540530:+|nuORF	ENST00000418386.2_1_6:31540090-31540530:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	405.9244079589844	3	405.923919	1214.74993	1.7255	0.00070044	-1.8213	-0.00073932	-0.095784	-3.8881E-05	405.9230675134814	68.412	1.0012	65.598	64.962	65.964	-2.8143					51	19	4	0	0	0	0.71582	1	2991	2991		24.232	1.6522	1	168270			33695	11638	27759	27784	37072	37072					0.15114234973475504
LPGPSEEFV	9	Unmodified	_LPGPSEEFV_					0	0	0			REV__tr|A0A553SMK3|A0A553SMK3_NIACIS-adenosylmethioninedecarboxylaseproenzymeOS=NialliacirculansOX=1397GN=speDPE=3SV=1	REV__tr|A0A553SMK3|A0A553SMK3_NIACIS-adenosylmethioninedecarboxylaseproenzymeOS=NialliacirculansOX=1397GN=speDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	487.7452392578125	2	487.745108	973.475663	2.4472	0.0011936	-1.7761	-0.00086627	0.67111	0.00032733	487.74399401921767	27.829	0.93581	25.12	24.742	25.677	-2.7097					37	20	3	0	0	0	0.69895	1	526	526		18.324	0.95945	1	33068	+		33696	30341	27760	27785	37073	37073					-0.012136275763282356
LPGQHGATPS	10	Unmodified	_LPGQHGATPS_					0	0	0		ENST00000412091.1_2_7:65958297-65958540:-|nuORF	ENST00000412091.1_2_7:65958297-65958540:-|nuORF	ENST00000412091.1_2_7:65958297-65958540:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.2669677734375	2	482.745973	963.477394	-0.17795	-8.5905E-05	0.81748	0.00039463	0.63952	0.00030873	482.74586065106126	56.231	0.65024	56.231	56.052	56.702	0					24	15	2	0	0	0	0.026734	1	4694	4694		47.657	3.1263	1	370510			33697	11546	27761	27786	37074	37074					-0.005805737677064826
LPGQVPKNLE	10	Unmodified	_LPGQVPKNLE_					0	0	0			REV__ENSG00000110002|ENST00000456829|VWA5A	REV__ENSG00000110002|ENST00000456829|VWA5A	MULTI-MSMS	OvCa99_classI_Rep5	1	547.8126831054688	2	547.813856	1093.61316	-0.42801	-0.00023447	-2.0807	-0.0011398	-2.5087	-0.0013743	547.8125746707238	23.522	0.64006	23.522	23.347	23.987	0					25	12	3	0	0	0	0.59317	1	337	337		42.864	0.46813	1	372300	+		33698	17963	27762	27787	37075	37075					0.07009701023071102
LPGRCLPL	8	Carbamidomethyl (C)	_LPGRC(Carbamidomethyl (C))LPL_	LPGRC(1)LPL		LPGRC(55)LPL		0	1	0		ENST00000490692.1_1_1:55521765-55527101:+|nuORF	ENST00000490692.1_1_1:55521765-55527101:+|nuORF	ENST00000490692.1_1_1:55521765-55527101:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	463.2693786621094	2	463.26803	924.521507	1.846	0.00085519	-3.3985	-0.0015744	-1.5525	-0.00071923	463.26624558934645	112.58	0.99352	112.58	112.34	113.33	0					39	21	3	0	0	0	0.64377	1	12816	12816		54.765	10.234	1	472630			33699	12701	27763	27788	37076	37076	147				0.056227391249194625
LPGRIVPPL	9	Unmodified	_LPGRIVPPL_					0	0	0		nc|ENSG00000168070|Q3KP22-4|MAJIN;nc|ENSG00000168070|Q3KP22|MAJIN;chr11:64947465-64954757|300|10.53|0.64|4.04|-|ENST00000530444|MAJIN,MAJIN	nc|ENSG00000168070|Q3KP22-4|MAJIN	nc|ENSG00000168070|Q3KP22-4|MAJIN	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.31329345703125	2	481.313295	960.612037	0.23329	0.00011228	-0.56103	-0.00027003	-0.32775	-0.00015775	481.31286467483017	112.83	1.2876	111.39	110.91	112.2	-1.4461					73	25	4	0	0	0	0.42057	1	10462	10462		50.025	4.0726	1	383100			33700	297	27764	27789	37077	37077					0.130155314448416
LPGRPTWGF	9	Unmodified	_LPGRPTWGF_					0	0	0		ENSG00000186143|ENST00000335524|PRR30	ENSG00000186143|ENST00000335524|PRR30	ENSG00000186143|ENST00000335524|PRR30	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7947387695312	2	515.777077	1029.5396	-0.56436	-0.00029108	-4.1728	-0.0021523	-4.7372	-0.0024433	515.7748378525093	63.526	0.72005	60.051	59.868	60.588	-3.475					24	14	2	0	0	0	0.027462	1	4474	4474		25.45	4.9683	1	203650			33701	8316	27765	27790	37078	37078					0.026011973712684267
LPGSQPLL	8	Unmodified	_LPGSQPLL_					0	0	0		ENST00000600244.5_1_19:18542527-18543889:+|nuORF;nc|ENSG00000130511|Q9BWG4-2|SSBP4;ENSG00000130511|ENST00000270061|SSBP4	ENST00000600244.5_1_19:18542527-18543889:+|nuORF	ENST00000600244.5_1_19:18542527-18543889:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	412.74627685546875	2	412.747453	823.480354	-0.0041108	-1.6967E-06	-3.0137	-0.0012439	-3.0178	-0.0012456	412.74611275073886	135.39	1.6252	134.28	133.62	135.24	-1.1076					83	32	4	0	0	0	0.65582	1	11003	11003		52.299	2.2746	1	589310			33702	3990	27766	27791	37079	37079					0.06155301357091503
LPGSRRNP	8	Unmodified	_LPGSRRNP_					0	0	0		ENST00000573965.1_3_16:2933333-2946417:+|nuORF	ENST00000573965.1_3_16:2933333-2946417:+|nuORF	ENST00000573965.1_3_16:2933333-2946417:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	448.7567443847656	2	448.756675	895.498798	2.4907	0.0011177	-2.4567	-0.0011025	0.033966	1.5243E-05	448.75546213583186	31.682	1.1373	28.972	28.74	29.877	-2.7097					50	22	3	0	0	0	0.73626	1	988	988		33.516	1.5607	1	154360			33703	13926	27767	27792	37080	37080					0.046868560516600155
LPGTNLFIPG	10	Unmodified	_LPGTNLFIPG_					0	0	0		ENST00000483571.5_1_14:60582139-60592559:+|nuORF;ENSG00000126773|ENST00000406854|PCNX4	ENST00000483571.5_1_14:60582139-60592559:+|nuORF	ENST00000483571.5_1_14:60582139-60592559:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	514.3113403320312	2	514.792392	1027.57023	-1.0659	-0.00054872	-2.6115	-0.0013444	-3.6774	-0.0018931	514.791147127677	52.676	0.8879	49.862	49.641	50.529	-2.8139					22	17	2	0	0	0	0.026681	1	3541	3541		52.937	5.2794	1	31037			33704	3799	27768	27793	37081	37081					0.05754930965645144
LPGTQELGALT	11	Unmodified	_LPGTQELGALT_					0	0	0			REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MULTI-MSMS	OvCa9_classI_Rep2	2	550.3033447265625	2	550.303321	1098.59209	-1.3686	-0.00075312	0.97734	0.00053783	-0.39121	-0.00021529	550.3038190242007	62.985	2.202	60.24	59.695	61.897	-2.7444					104	41	4	0	0	0	0.050727	6	4755	4723;4737;4743;4749;4755;4761		141.52	37.639	1	3245100	+		33705	17367	27769	27794	37082;37083;37084;37085;37086;37087	37086					0.04673690923573304
LPGTQELGALT	11	Unmodified	_LPGTQELGALT_					0	0	0			REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.3046875	2	550.303321	1098.59209	-0.36306	-0.00019979	-0.80483	-0.0004429	-1.1679	-0.00064269	550.3029145148993	63.654	2.5638	60.179	59.625	62.189	-3.475					135	52	5	0	0	0	0.050727	6	4471	4471;4483;4495;4520;4532;4544		136.27	41.84	1	19032000	+		33706	17367	27769	27794	37088;37089;37090;37091;37092;37093	37088					0.04673690923573304
LPGTQELGALT	11	Unmodified	_LPGTQELGALT_					0	0	0			REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MULTI-MATCH	OvCa9_classI_Rep3	3		2	550.303321	1098.59209	1.025	0.00056408	-1.3856	-0.00076248	-0.36052	-0.0001984	550.3024494372565	63.192	1.1849	60.158	59.561	60.746	-3.0339	-0.034531	-0.0019209	NaN	141.52	38	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16527	+		33707	17367	27769	27794							0.04673690923573304
LPGTRGPLL	9	Unmodified	_LPGTRGPLL_					0	0	0		ENST00000243298.2_1_X:103080673-103087036:-|nuORF	ENST00000243298.2_1_X:103080673-103087036:-|nuORF	ENST00000243298.2_1_X:103080673-103087036:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.2883605957031	2	462.287277	922.560001	-0.84311	-0.00038976	0.56502	0.0002612	-0.27809	-0.00012856	462.28743237203275	98.935	1.4389	96.61	96.228	97.667	-2.3253					81	27	4	0	0	0	0.16524	1	8823	8823		82.305	0.064519	1	777210			33708	9766	27770	27795	37094	37094					0.09562368031106416
LPGTSRPPII	10	Unmodified	_LPGTSRPPII_					0	0	0		nc|ENSG00000163029|Q96SB8-2|SMC6;ENSG00000163029|ENST00000448223|SMC6	nc|ENSG00000163029|Q96SB8-2|SMC6	nc|ENSG00000163029|Q96SB8-2|SMC6	MULTI-MSMS	OvCa9_classI_Rep2	2	525.8179321289062	2	525.818941	1049.62333	-0.034605	-1.8196E-05	-0.18638	-9.8E-05	-0.22098	-0.0001162	525.8186752814286	93.147	1.4956	91.979	91.55	93.046	-1.168					63	28	4	0	0	0	0.45225	1	8321	8321		60.972	0.85368	1	591320			33709	6257	27771	27796	37095	37095					0.10050308748327552
LPGTYKST	8	Unmodified	_LPGTYKST_					0	0	0			REV__ENSG00000116525|ENST00000291416|TRIM62	REV__ENSG00000116525|ENST00000291416|TRIM62	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.73077392578125	2	433.734543	865.454533	0.6693	0.0002903	-0.64544	-0.00027995	0.023856	1.0347E-05	433.73403082581785	61.908	1.0125	58.45	58.197	59.21	-3.4577					36	20	3	0	0	0	0.028476	1	4325	4325		30.504	23.768	1	73514	+		33710	18304	27772	27797	37096	37096					0.0164240711480943
LPGTYKST	8	Unmodified	_LPGTYKST_					0	0	0			REV__ENSG00000116525|ENST00000291416|TRIM62	REV__ENSG00000116525|ENST00000291416|TRIM62	MULTI-MATCH	OvCa9_classI_Rep2	2		2	433.734543	865.454533	-1.2149	-0.00052695	1.7798	0.00077194	0.56484	0.00024499	433.7351722206621	61.42	0.62564	58.661	58.412	59.038	-2.7593	0.1054	0.0010146	NaN	23.042	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14516	+		33711	18304	27772	27797							0.0164240711480943
LPGVSREEV	9	Unmodified	_LPGVSREEV_					0	0	0			REV__nc|ENSG00000142627|P29317-2|EPHA2	REV__nc|ENSG00000142627|P29317-2|EPHA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.250732421875	2	493.269281	984.52401	-0.81511	-0.00040207	2.9891	0.0014744	2.174	0.0010724	493.270801468249	36.141	0.63335	36.141	36.029	36.662	0					13	13	2	0	0	0	0.027462	1	1892	1892		27.882	1.1893	1	59143	+		33712	19797	27773	27798	37097	37097					0.031128660635772576
LPHAPGVQM	9	Unmodified	_LPHAPGVQM_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-SECPEP	OvCa9_classI_Rep3	3	475.5784606933594	2	475.249837	948.485122	0.72935	0.00034662	-0.5233	-0.0002487	0.20604	9.7921E-05	475.249477605155	78.782	1.1968	76.429	76.048	77.244	-2.3527					42	23	2	0	0	0	0.027462	1	4226	4226		52.299	30.339	1	254790			33713	3180;8632	27774	27799	37098	37098					0.008818622282092292
LPHATRSPP	9	Unmodified	_LPHATRSPP_					0	0	0		ENST00000498806.1_1_1:1684440-1685042:-|nuORF	ENST00000498806.1_1_1:1684440-1685042:-|nuORF	ENST00000498806.1_1_1:1684440-1685042:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.2729797363281	2	488.272158	974.529764	-0.20466	-9.9929E-05	3.8012	0.001856	3.5966	0.0017561	488.27375819586206	39.751	1.1685	36.797	36.517	37.685	-2.9541					59	22	4	0	0	0	0.40667	1	1672	1672		51.335	3.4199	1	268970			33714	12834	27775	27800	37099	37099					0.041480093658947226
LPHCKGLIE	9	Unmodified	_LPHCKGLIE_					0	0	0			REV__ENSG00000147614|ENST00000285393|ATP6V0D2	REV__ENSG00000147614|ENST00000285393|ATP6V0D2	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.3233642578125	2	505.278595	1008.54264	-0.84506	-0.00042699	-0.0016531	-8.3527E-07	-0.84672	-0.00042783	505.7789632105438	105.14	0.14889	104.71	104.6	104.75	-0.43642					4	2	2	0	0	0	0.027462	1	9748	9748		37.159	17.799	1	4597.8	+		33715	20077	27776	27801	37100	37100					0.03870704433791161
LPHINFNP	8	Unmodified	_LPHINFNP_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-SECPEP	OvCa9_classI_Rep3	3	475.3134460449219	2	476.255977	950.497401	1.1654	0.00055503	-1.1615	-0.00055319	0.0038627	1.8397E-06	476.25527982434545	104.33	1.1958	102.9	102.6	103.8	-1.4347					47	22	3	0	0	0	0.028476	1	7234	7234		52.299	9.8247	1	100390	+		33716	17095	27777	27802	37101	37101					0.020172219628989296
LPHKKVFNLI	10	Unmodified	_LPHKKVFNLI_					0	0	0			REV__ENSG00000168758|ENST00000305476|SEMA4C	REV__ENSG00000168758|ENST00000305476|SEMA4C	MULTI-MSMS	OvCa9_classI_Rep2	2	403.58709716796875	3	403.588648	1207.74411	-0.025043	-1.0107E-05	-3.291	-0.0013282	-3.316	-0.0013383	403.58728537830933	61.847	1.6847	59.087	58.62	60.305	-2.7593					89	32	4	0	0	0	0.59317	2	4626	4614;4626		42.864	7.2767	1	569970	+		33717	21398	27778	27803	37102;37103	37103					0.1485513646180152
LPHNFPIPF	9	Unmodified	_LPHNFPIPF_					0	0	0		ENST00000316757.3_1_19:3760164-3761632:-|nuORF	ENST00000316757.3_1_19:3760164-3761632:-|nuORF	ENST00000316757.3_1_19:3760164-3761632:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.8533325195312	2	541.295102	1080.57565	-0.44978	-0.00024346	3.7104	0.0020084	3.2606	0.0017649	541.2967191322346	39.265	0.35641	39.265	39.107	39.463	0					12	7	2	0	0	0	0.027462	1	2280	2280		26.796	13.984	1	136410			33718	10347	27779	27804	37104	37104					0.03858654548116647
LPHNSPLLA	9	Unmodified	_LPHNSPLLA_					0	0	0			REV__tr|A0A553SMP9|A0A553SMP9_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22990PE=3SV=1	REV__tr|A0A553SMP9|A0A553SMP9_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22990PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	481.2778625488281	2	481.276909	960.539266	-0.75286	-0.00036233	1.0325	0.00049691	0.27962	0.00013458	481.2775599086682	77.06	0.83206	74.688	74.453	75.285	-2.3715					51	15	4	0	0	0	0.12515	1	4003	4003		90.37	5.209	1	819190	+		33719	30357	27780	27805	37105	37105					0.057417776514284924
LPHNSPLLA	9	Unmodified	_LPHNSPLLA_					0	0	0			REV__tr|A0A553SMP9|A0A553SMP9_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22990PE=3SV=1	REV__tr|A0A553SMP9|A0A553SMP9_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22990PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.2796936035156	2	481.276909	960.539266	-0.17341	-8.3457E-05	-1.2838	-0.00061789	-1.4573	-0.00070134	481.2762660765146	77.879	0.72801	75.063	74.873	75.601	-2.8165					47	14	4	0	0	0	0.27001	1	6245	6245		66.429	0.6261	1	567650	+		33720	30357	27780	27805	37106	37106					0.057417776514284924
LPHSQMLK	8	Unmodified	_LPHSQMLK_					0	0	0			REV__RNF43|p.R296Tfs*2|1|0.03|ENSG00000108375|chr17:58360215-58360216|-/T|frameshift_variant	REV__RNF43|p.R296Tfs*2|1|0.03|ENSG00000108375|chr17:58360215-58360216|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	477.2661437988281	2	477.265487	952.516422	0.3158	0.00015072	0.21401	0.00010214	0.52982	0.00025286	477.26556342485156	124.97	1.2358	124.74	124.37	125.6	-0.2359					42	24	2	0	0	0	0.66992	1	12199	12199		49.442	1.7842	1	116290	+		33721	17881	27781	27806	37107	37107					0.03826435262317318
LPHVYALL	8	Unmodified	_LPHVYALL_					0	0	0			REV__chr12:2864752-2864885|346|10.97|0.19|5.85|-|1|FOXM1,FOXM1|1	REV__chr12:2864752-2864885|346|10.97|0.19|5.85|-|1|FOXM1,FOXM1|1	MULTI-MSMS	OvCa9_classI_Rep2	2	463.2781066894531	2	463.278921	924.543289	-0.62606	-0.00029004	-3.9055	-0.0018093	-4.5316	-0.0020994	463.27705603624554	74.992	1.8677	73.021	72.376	74.244	-1.9711					93	35	4	0	0	0	0.58426	2	6133	6133;6161		67.327	5.2198	1	495750	+		33722	15877	27782	27807	37108;37109	37108					0.0779986714513825
LPHVYALL	8	Unmodified	_LPHVYALL_					0	0	0			REV__chr12:2864752-2864885|346|10.97|0.19|5.85|-|1|FOXM1,FOXM1|1	REV__chr12:2864752-2864885|346|10.97|0.19|5.85|-|1|FOXM1,FOXM1|1	MULTI-MSMS	OvCa9_classI_Rep3	3	463.27801513671875	2	463.278921	924.543289	-0.58518	-0.0002711	-3.9113	-0.001812	-4.4965	-0.0020831	463.27703196327946	74.974	2.0641	72.564	72.192	74.256	-2.4106					88	40	4	0	0	0	0.58426	1	3753	3753		67.327	5.2198	1	616420	+		33723	15877	27782	27807	37110	37110					0.0779986714513825
LPHVYALL	8	Unmodified	_LPHVYALL_					0	0	0			REV__chr12:2864752-2864885|346|10.97|0.19|5.85|-|1|FOXM1,FOXM1|1	REV__chr12:2864752-2864885|346|10.97|0.19|5.85|-|1|FOXM1,FOXM1|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.2790222167969	2	463.278921	924.543289	-0.39295	-0.00018205	-4.4717	-0.0020716	-4.8646	-0.0022537	463.27682376212437	75.898	2.0127	72.959	72.497	74.51	-2.9389					92	41	4	0	0	0	0.58426	1	5986	5986		67.327	7.2089	1	1343400	+		33724	15877	27782	27807	37111	37111					0.0779986714513825
LPIAQGSDKI	10	Unmodified	_LPIAQGSDKI_					0	0	0			REV__ENSG00000196220|ENST00000383836|SRGAP3	REV__ENSG00000196220|ENST00000383836|SRGAP3	MULTI-MSMS	OvCa9_classI_Rep2	2	521.3004150390625	2	521.300581	1040.58661	0.72816	0.00037959	-1.1456	-0.00059719	-0.41741	-0.0002176	521.2998997785178	81.654	1.6566	80.005	79.614	81.271	-1.6485					76	31	3	0	0	0	0.12609	2	6931	6931;6948		107.01	20.772	1	726440	+		33725	22802	27783	27808	37112;37113	37112					0.06794012131740601
LPIAQGSDKI	10	Unmodified	_LPIAQGSDKI_					0	0	0			REV__ENSG00000196220|ENST00000383836|SRGAP3	REV__ENSG00000196220|ENST00000383836|SRGAP3	MULTI-MSMS	OvCa9_classI_Rep3	3	521.3011474609375	2	521.300581	1040.58661	-0.85731	-0.00044691	0.17995	9.3807E-05	-0.67736	-0.00035311	521.3005681332529	82.26	1.3981	79.964	79.584	80.982	-2.2963					86	27	5	0	0	0	0.11378	1	4615	4615		110.12	8.5192	1	1573400	+		33726	22802	27783	27808	37114	37114					0.06794012131740601
LPIEVGEFM	9	Unmodified	_LPIEVGEFM_					0	0	0			REV__CACNA1D-DNAH1|1|fusion;REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__CACNA1D-DNAH1|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.8200073242188	2	517.764986	1033.51542	0.67306	0.00034849	-2.5934	-0.0013427	-1.9203	-0.00099426	517.7631015093882	150.77	0.55272	150.77	150.54	151.09	0					15	10	2	0	0	0	0.027433	1	17637	17637		57.811	29.557	1	30024	+		33727	15726;18203	27784	27809	37115	37115					1.7610275335755432E-06
LPIGPPYPII	10	Unmodified	_LPIGPPYPII_					0	0	0			REV__tr|A0A553SHK3|A0A553SHK3_NIACIAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_13020PE=3SV=1	REV__tr|A0A553SHK3|A0A553SHK3_NIACIAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_13020PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3296508789062	2	540.328611	1078.64267	-1.2676	-0.00068491	4.0333	0.0021793	2.7657	0.0014944	540.3307152267141	139.22	4.0818	138.16	137	141.08	-1.0595					200	82	3	0	0	0	0.79715	1	11509	11509		19.36	1.0356	1	55828	+		33728	29809	27785	27810	37116	37116					0.10649265039205602
LPIHGAMVN	9	Unmodified	_LPIHGAMVN_					0	0	0		tr|A0A7D6W3A1|A0A7D6W3A1_9CLOTPhosphoenolpyruvatecarboxykinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09145PE=4SV=1	tr|A0A7D6W3A1|A0A7D6W3A1_9CLOTPhosphoenolpyruvatecarboxykinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09145PE=4SV=1	tr|A0A7D6W3A1|A0A7D6W3A1_9CLOTPhosphoenolpyruvatecarboxykinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09145PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.3133850097656	2	476.257662	950.500772	-0.96597	-0.00046005	-2.6333	-0.0012541	-3.5993	-0.0017142	476.256292609271	103.43	0.98718	102.75	102.48	103.46	-0.68459					44	19	3	0	0	0	0.027462	1	9526	9526		28.254	20.564	1	80428			33729	35449	27786	27811	37117	37117					0.023541487452575893
LPIKLPWP	8	Unmodified	_LPIKLPWP_					0	0	0			REV__ENST00000381638.6_1_17:3908682-3909213:-|nuORF	REV__ENST00000381638.6_1_17:3908682-3909213:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.30694580078125	2	482.304939	962.595324	0.55527	0.00026781	2.4879	0.0011999	3.0432	0.0014677	482.30597189609745	140.99	1.301	139.53	139.2	140.5	-1.4627					53	24	3	0	0	0	0.74595	1	13753	13753		14.664	5.1935	1	78534	+		33730	25200	27787	27812	37118	37118					0.11253030558884802
LPILAKQMII	10	Unmodified	_LPILAKQMII_					0	0	0		tr|A0A7D7A134|A0A7D7A134_9CLOTTransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_13775PE=4SV=1	tr|A0A7D7A134|A0A7D7A134_9CLOTTransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_13775PE=4SV=1	tr|A0A7D7A134|A0A7D7A134_9CLOTTransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_13775PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.3134765625	2	570.36467	1138.71479	2.2655	0.0012922	4.1601	0.0023728	6.4257	0.003665	570.3670495055599	121.89	0.60628	121.89	121.52	122.13	0					18	12	2	0	0	0	0.026612	1	14020	14020		45.952	1.8352	1	84039			33731	36023	27788	27813	37119	37119					0.15097856121292352
LPILGPQIMD	10	Unmodified	_LPILGPQIMD_					0	0	0			REV__ENSG00000175727|ENST00000319080|MLXIP	REV__ENSG00000175727|ENST00000319080|MLXIP	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.8079833984375	2	548.807185	1095.59982	0.36661	0.0002012	2.9618	0.0016254	3.3284	0.0018266	548.8086539011326	31.509	1.022	28.978	28.574	29.596	-2.5308					57	38	2	0	0	0	0.82648	1	700	700		15.642	3.435	1	20104	+		33732	21911	27789	27814	37120	37120					0.05584126919507071
LPILKIEIE	9	Unmodified	_LPILKIEIE_					0	0	0		tr|A0A7D6W2J3|A0A7D6W2J3_9CLOTTrypsin-likepeptidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06460PE=4SV=1	tr|A0A7D6W2J3|A0A7D6W2J3_9CLOTTrypsin-likepeptidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06460PE=4SV=1	tr|A0A7D6W2J3|A0A7D6W2J3_9CLOTTrypsin-likepeptidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06460PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.3211669921875	2	534.339175	1066.6638	-1.9028	-0.0010167	2.5616	0.0013688	0.65889	0.00035207	534.3411711498953	54.713	0.30791	51.465	51.336	51.644	-3.2474					10	5	3	0	0	0	0.027462	1	3421	3421		44.117	6.9577	1	26557			33733	35433	27790	27815	37121	37121					0.13313230348057914
LPILLIILD	9	Unmodified	_LPILLIILD_					0	0	0			REV__ULK4|p.S1159I|1|0.1|ENSG00000168038|chr3:41455513-41455513|C/A|missense_variant	REV__ULK4|p.S1159I|1|0.1|ENSG00000168038|chr3:41455513-41455513|C/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.84747314453125	2	511.846636	1021.67872	1.215	0.00062189	-2.7577	-0.0014115	-1.5427	-0.00078965	511.84514235689	85.522	2.0184	82.876	82.361	84.379	-2.6463					82	40	3	0	0	0	0.6959	1	7209	7209		19.36	0	1	433590	+		33734	32748	27791	27816	37122	37122					0.16874722216084592
LPIPPPAGSAS	11	Unmodified	_LPIPPPAGSAS_					0	0	0		ENST00000601097.1_1_19:17843916-17845234:+|nuORF	ENST00000601097.1_1_19:17843916-17845234:+|nuORF	ENST00000601097.1_1_19:17843916-17845234:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	503.7786560058594	2	503.782025	1005.5495	-3.0867	-0.001555	-3.4935	-0.00176	-6.5803	-0.003315	503.78006253314857	36.309	2.2758	33.6	32.75	35.026	-2.7097					126	45	4	0	0	0	0.54764	1	1510	1510		49.442	13.823	1	296190			33735	14222	27792	27817	37123	37123					0.046943405859906306
LPIQHQVAI	9	Unmodified	_LPIQHQVAI_					0	0	0			REV__tr|A0A553STP3|A0A553STP3_NIACIDUF111familyproteinOS=NialliacirculansOX=1397GN=CEQ21_05520PE=4SV=1	REV__tr|A0A553STP3|A0A553STP3_NIACIDUF111familyproteinOS=NialliacirculansOX=1397GN=CEQ21_05520PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.26666259765625	2	509.805834	1017.59712	2.4847	0.0012667	-0.7496	-0.00038215	1.7351	0.00088454	509.80545114312804	113.4	0.47365	113.4	113.06	113.53	0					18	11	2	0	0	0	0.027462	1	12933	12933		30.504	0	1	195730	+		33736	30990	27793	27818	37124	37124					0.08902039576844345
LPIQLSLAKKV	11	Unmodified	_LPIQLSLAKKV_					0	0	0			REV__tr|A0A553SJY6|A0A553SJY6_NIACIHistidinol-phosphataseOS=NialliacirculansOX=1397GN=hisJPE=3SV=1	REV__tr|A0A553SJY6|A0A553SJY6_NIACIHistidinol-phosphataseOS=NialliacirculansOX=1397GN=hisJPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	605.4015502929688	2	605.400099	1208.78564	1.6058	0.00097217	-0.89722	-0.00054318	0.7086	0.00042899	605.3994659025334	149.41	0.7339	149.41	149.11	149.84	0					32	14	3	0	0	0	0.61983	1	17483	17483		42.864	16.801	1	286410	+		33737	30056	27794	27819	37125	37125					0.18960272430445002
LPISSKTLHK	10	Unmodified	_LPISSKTLHK_					0	0	0			REV__L1PB1_dup435|chr1:148902763-148905178:-|1.8547645190966555|0.2878265206874703|2.69|429.0|34|2|sense	REV__L1PB1_dup435|chr1:148902763-148905178:-|1.8547645190966555|0.2878265206874703|2.69|429.0|34|2|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	562.3408203125	2	562.345323	1122.67609	-2.9015	-0.0016316	-0.70711	-0.00039764	-3.6086	-0.0020293	562.3448419475409	142.33	4.504	141.32	140	144.5	-1.0106					205	90	3	0	0	0	0.74374	1	11821	11821		25.574	0	1	106680	+		33738	28587	27795	27820	37126	37126					0.11966266811123205
LPITKITKAQA	11	Unmodified	_LPITKITKAQA_					0	0	0			REV__tr|A0A7D6VRK4|A0A7D6VRK4_9CLOTDNAligaseOS=ClostridiumintestinaleOX=36845GN=ligAPE=3SV=1	REV__tr|A0A7D6VRK4|A0A7D6VRK4_9CLOTDNAligaseOS=ClostridiumintestinaleOX=36845GN=ligAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	592.371826171875	2	592.374081	1182.73361	-4.4138	-0.0026146	1.0011	0.00059302	-3.4127	-0.0020216	592.3745667748314	155.34	1.3333	153.85	153.54	154.88	-1.4911					97	38	4	0	0	0	0.7246	1	15379	15379		20.837	2.5751	1	262760	+		33739	31425	27796	27821	37127	37127					0.149551090166824
LPIVSSHRGRI	11	Unmodified	_LPIVSSHRGRI_					0	0	0		ENST00000397498.8_1_17:79648623-79648737:-|nuORF	ENST00000397498.8_1_17:79648623-79648737:-|nuORF	ENST00000397498.8_1_17:79648623-79648737:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	412.25079345703125	3	412.250806	1233.73059	0.31775	0.00013099	-0.56972	-0.00023487	-0.25197	-0.00010387	412.2505624621049	33.849	0.90669	33.849	33.632	34.539	0					42	18	4	0	0	0	0.68709	1	1583	1583		34.087	2.4522	1	1080800			33740	11345	27797	27822	37128	37128					0.12307278682578726
LPKADQDLLF	10	Unmodified	_LPKADQDLLF_					0	0	0		nc|ENSG00000153234|P43354-2|NR4A2;ENSG00000153234|ENST00000339562|NR4A2	nc|ENSG00000153234|P43354-2|NR4A2	nc|ENSG00000153234|P43354-2|NR4A2	MULTI-MSMS	OvCa9_classI_Rep2	2	580.3197021484375	2	580.321514	1158.62847	-1.1219	-0.00065106	-1.547	-0.00089778	-2.6689	-0.0015488	580.3205275503568	48.28	1.7369	45.57	45.083	46.82	-2.7097					101	34	4	0	0	0	0.55359	1	3025	3025		47.657	1.6851	1	548460			33741	5669	27798	27823	37129	37129					0.055505678202735
LPKAQGRI	8	Unmodified	_LPKAQGRI_					0	0	0		ENST00000307145.3_2_15:31669752-31669836:+|nuORF	ENST00000307145.3_2_15:31669752-31669836:+|nuORF	ENST00000307145.3_2_15:31669752-31669836:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	441.7796325683594	2	441.779619	881.544686	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.853	1	38.873	38.373	39.373	-2.9804								0	0	0	0.30129	1	1901	1901		40.573	4.9543	1				33742	10252	27799	27824	37130	37130					0.09917501233894654
LPKDMGIVNLL	11	Unmodified	_LPKDMGIVNLL_					0	0	0			REV__ENST00000545776.5_1_20:43255095-43280248:-|nuORF	REV__ENST00000545776.5_1_20:43255095-43280248:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	404.90777587890625	3	404.905537	1211.69478	0.61257	0.00024803	2.3587	0.00095506	2.9713	0.0012031	404.9064193505604	54.66	1.0754	51.412	51.132	52.207	-3.2474					50	20	4	0	0	0	0.52474	1	3407	3407		51.528	7.1506	1	279670	+		33743	22867	27800	27825	37131	37131					0.09740060390709004
LPKDMGIVNLL	11	Unmodified	_LPKDMGIVNLL_					0	0	0			REV__ENST00000545776.5_1_20:43255095-43280248:-|nuORF	REV__ENST00000545776.5_1_20:43255095-43280248:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	404.905537	1211.69478	0.27407	0.00011097	3.0088	0.0012183	3.2828	0.0013292	404.9066586394313	54.26	1.447	51.446	51.025	52.472	-2.8139	0.017012	0.00045441	NaN	51.528	68	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138880	+		33744	22867	27800	27825							0.09740060390709004
LPKDMGIVNLL	11	Unmodified	_LPKDMGIVNLL_					0	0	0			REV__ENST00000545776.5_1_20:43255095-43280248:-|nuORF	REV__ENST00000545776.5_1_20:43255095-43280248:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		3	404.905537	1211.69478	0.61257	0.00024803	2.3587	0.00095506	2.9713	0.0012031	404.9064193505604	54.66	1.0754	51.412	51.132	52.207	-3.2474	-0.017012	-0.00033519	NaN	51.528	50	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279670	+		33745	22867	27800	27825							0.09740060390709004
LPKDRSPE	8	Unmodified	_LPKDRSPE_					0	0	0		ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.7427978515625	2	471.256174	940.497795	2.7001	0.0012724	3.6927	0.0017402	6.3928	0.0030126	471.25783975338203	75.659	0.23801	75.659	75.563	75.801	0					7	5	2	0	0	0	0.028476	1	7561	7561		7.1934	0	1	156260			33746	8849	27801	27826	37132	37132					0.025165968920987325
LPKEIKMF	8	Unmodified	_LPKEIKMF_					0	0	0		tr|A0A553STZ6|A0A553STZ6_NIACIMBLfoldmetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_06000PE=4SV=1	tr|A0A553STZ6|A0A553STZ6_NIACIMBLfoldmetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_06000PE=4SV=1	tr|A0A553STZ6|A0A553STZ6_NIACIMBLfoldmetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_06000PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	503.3261413574219	2	503.293714	1004.57287	-0.025642	-1.2905E-05	2.4072	0.0012115	2.3816	0.0011986	503.29098748391374	114.08	0.81824	113.03	112.68	113.5	-1.055					25	15	3	0	0	0	0.028476	1	8374	8374		55.504	12.64	1	19018			33747	34556	27802	27827	37133	37133					0.07077063098972758
LPKGNRALA	9	Unmodified	_LPKGNRALA_					0	0	0			REV__tr|A0A553STI6|A0A553STI6_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_04950PE=3SV=1	REV__tr|A0A553STI6|A0A553STI6_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_04950PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.2912292480469	2	470.290351	938.566149	0.052113	2.4508E-05	-0.67944	-0.00031953	-0.62733	-0.00029503	470.28999558575936	46.445	1.893	43.372	43.03	44.923	-3.0724					85	36	4	0	0	0	0.42057	1	2464	2464		50.025	2.1089	1	1576300	+		33748	30968	27803	27828	37134	37134					0.094408862625869
LPKGSTLSI	9	Unmodified	_LPKGSTLSI_					0	0	0			REV__tr|A0A553SSU7|A0A553SSU7_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03560PE=3SV=1	REV__tr|A0A553SSU7|A0A553SSU7_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03560PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.280029296875	2	458.279118	914.543683	-0.22482	-0.00010303	0.17993	8.246E-05	-0.044886	-2.0571E-05	458.27908027187215	76.243	1.3813	73.304	73.033	74.414	-2.9389					65	28	4	0	0	0	0.3076	1	6052	6052		62.107	3.3255	1	477610	+		33749	30882	27804	27829	37135	37135					0.08299242074338053
LPKHTRLI	8	Unmodified	_LPKHTRLI_					0	0	0			REV__ENST00000254066.9_1_17:38512563-38513013:+|nuORF	REV__ENST00000254066.9_1_17:38512563-38513013:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	489.31365966796875	2	489.316369	976.618185	-5.0625	-0.0024771	0.75357	0.00036874	-4.3089	-0.0021084	489.3166161919068	151.03	1.2523	150.08	149.76	151.01	-0.95647					68	24	4	0	0	0	0.75208	1	12843	12843		17.365	2.7009	1	299480	+		33750	23875	27805	27830	37136	37136					0.12894049676367558
LPKHTRLI	8	Unmodified	_LPKHTRLI_					0	0	0			REV__ENST00000254066.9_1_17:38512563-38513013:+|nuORF	REV__ENST00000254066.9_1_17:38512563-38513013:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.31378173828125	2	489.316369	976.618185	-3.028	-0.0014817	-1.2985	-0.00063537	-4.3265	-0.002117	489.31563425823117	151.49	1.5662	150.06	149.67	151.24	-1.4344					103	34	4	0	0	0	0.75208	1	14975	14975		17.365	1.7287	1	763840	+		33751	23875	27805	27830	37137	37137					0.12894049676367558
LPKIPSNATL	10	Unmodified	_LPKIPSNATL_					0	0	0		ENSG00000096060|ENST00000357266|FKBP5;nc|ENSG00000096060|Q13451-2|FKBP5	ENSG00000096060|ENST00000357266|FKBP5;nc|ENSG00000096060|Q13451-2|FKBP5	ENSG00000096060|ENST00000357266|FKBP5	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.3199462890625	2	527.318774	1052.623	-1.4641	-0.00077207	0.62275	0.00032839	-0.84139	-0.00044368	527.3189640864877	93.163	1.5597	90.656	90.262	91.821	-2.5072					45	32	2	0	0	0	0.33877	1	8110	8110		76.17	1.1264	1	370240			33752	1942;14921	27806	27831	37138	37138					0.09878889028482263
LPKIRRLE	8	Unmodified	_LPKIRRLE_					0	0	0		tr|A0A553SJA4|A0A553SJA4_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_16415PE=4SV=1	tr|A0A553SJA4|A0A553SJA4_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_16415PE=4SV=1	tr|A0A553SJA4|A0A553SJA4_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_16415PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	512.8103637695312	2	512.834926	1023.6553	-0.33118	-0.00016984	-0.10972	-5.627E-05	-0.4409	-0.00022611	512.83480229962	94.218	1.0037	93.118	92.749	93.752	-1.0995					40	19	3	0	0	0	0.028476	1	8387	8387		120.62	38.316	1	49250			33753	33482	27807	27832	37139	37139					0.14441721222124215
LPKITRQLCS	10	Unmodified	_LPKITRQLCS_					0	0	0			REV__nc|ENSG00000196243|Q96LM1|LINC00615	REV__nc|ENSG00000196243|Q96LM1|LINC00615	MULTI-MSMS	OvCa9_classI_Rep2	2	579.8357543945312	2	579.836808	1157.65906	-0.59682	-0.00034606	0.35288	0.00020461	-0.24394	-0.00014145	579.8369831499307	64.403	2.0597	61.678	61.181	63.24	-2.7245					115	39	4	0	0	0	0.42962	1	4895	4895		64.207	5.9773	1	1521600	+		33754	29076	27808	27833	37140	37140					0.08654022933683336
LPKKGNKKGM	10	Unmodified	_LPKKGNKKGM_					0	0	0			REV__SYNPO2|p.K954N|1|0.04|ENSG00000172403|chr4:119031637-119031637|G/T|missense_variant	REV__SYNPO2|p.K954N|1|0.04|ENSG00000172403|chr4:119031637-119031637|G/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	550.8358154296875	2	550.834069	1099.65358	0.72337	0.00039846	2.5	0.0013771	3.2234	0.0017755	550.8353591854793	44.433	1.2943	41.724	41.452	42.747	-2.7097					54	25	3	0	0	0	0.81992	1	2539	2539		16.473	1.6083	1	147480	+		33755	29482	27809	27834	37141	37141					0.10774344141873371
LPKKPKPNN	9	Unmodified	_LPKKPKPNN_					0	0	0			REV__nc|ENSG00000136827|O14656-2|TOR1A	REV__nc|ENSG00000136827|O14656-2|TOR1A	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.7704467773438	2	518.319109	1034.62366	2.2397	0.0011609	4.0018	0.0020742	6.2415	0.0032351	518.3209267487985	96.135	0.46936	96.135	95.869	96.338	0					21	10	3	0	0	0	0.027462	1	10542	10542		37.159	0	1	374990	+		33756	19408	27810	27835	37142	37142					0.10773728468188892
LPKKPLVPE	9	Unmodified	_LPKKPLVPE_					0	0	0		nc|ENSG00000161180|Q8IYX3-1|CCDC116;nc|ENSG00000161180|Q8IYX3-3|CCDC116;ENSG00000161180|ENST00000292779|CCDC116	nc|ENSG00000161180|Q8IYX3-1|CCDC116	nc|ENSG00000161180|Q8IYX3-1|CCDC116	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.843994140625	2	510.826235	1019.63792	0.001175	6.0022E-07	4.3024	0.0021978	4.3036	0.0021984	510.82823887610346	123.25	0.29542	123.03	122.96	123.25	-0.21803					6	5	2	0	0	0	0.027462	1	11955	11955		29.15	19.444	1	11446			33757	6121	27811	27836	37143	37143					0.12888380896470153
LPKLKAGGH	9	Unmodified	_LPKLKAGGH_					0	0	0		ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000171316|ENST00000423902|CHD7;CHD7|p.S2860Kfs*9|1|0.3|ENSG00000171316|chr8:60865513-60865514|-/A|frameshift_variant	ENSG00000100888|ENST00000646647|CHD8;ENSG00000171316|ENST00000423902|CHD7	ENSG00000100888|ENST00000646647|CHD8	MULTI-MSMS	OvCa9_classI_Rep4_	4	460.78814697265625	2	460.787444	919.560336	-0.83883	-0.00038652	0.70542	0.00032505	-0.13342	-6.1477E-05	460.7876066741089	52.432	2.375	49.224	48.387	50.762	-3.208					112	46	4	0	0	0	0.32337	1	3143	3143		60.294	2.4827	1	572840			33758	2115;231	27812	27837	37144	37144					0.09733787750940337
LPKLKAGGH	9	Unmodified	_LPKLKAGGH_					0	0	0		ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8;ENSG00000171316|ENST00000423902|CHD7;CHD7|p.S2860Kfs*9|1|0.3|ENSG00000171316|chr8:60865513-60865514|-/A|frameshift_variant	ENSG00000100888|ENST00000646647|CHD8;ENSG00000171316|ENST00000423902|CHD7	ENSG00000100888|ENST00000646647|CHD8	MULTI-MATCH	OvCa9_classI_Rep2	2		2	460.787444	919.560336	-1.1949	-0.00055059	1.2531	0.00057741	0.058208	2.6821E-05	460.78784526882737	52.112	1.7789	49.299	48.552	50.331	-2.8129	0.037482	0.00027863	NaN	60.294	82	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135580			33759	2115;231	27812	27837							0.09733787750940337
LPKLLIITD	9	Unmodified	_LPKLLIITD_					0	0	0			REV__FNDC8|p.N68I|1|0.5|ENSG00000073598|chr17:35121896-35121896|A/T|missense_variant	REV__FNDC8|p.N68I|1|0.5|ENSG00000073598|chr17:35121896-35121896|A/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.7880249023438	2	513.333893	1024.65323	-0.19462	-9.9903E-05	-2.4533	-0.0012594	-2.6479	-0.0013593	513.3323516329467	39.297	1.0424	36.37	35.849	36.891	-2.9264					30	20	2	0	0	0	0.027462	1	1609	1609		21.96	0	1	44783	+		33760	28141	27813	27838	37145	37145					0.14189247693639118
LPKLTTTIPE	10	Unmodified	_LPKLTTTIPE_					0	0	0			REV__SCN4A|p.K1723_R1724insPLGNELSFS|1|0.06|ENSG00000007314|chr17:63941112-63941113|-/AGAAAAGGACAATTCATTCCCAAGTGG|inframe_insertion	REV__SCN4A|p.K1723_R1724insPLGNELSFS|1|0.06|ENSG00000007314|chr17:63941112-63941113|-/AGAAAAGGACAATTCATTCCCAAGTGG|inframe_insertion	MULTI-MSMS	OvCa99_classI_Rep5	1	556.833984375	2	556.831714	1111.64888	2.1988	0.0012244	0.91897	0.00051171	3.1178	0.0017361	556.8321837859951	81.929	1.3843	81.929	81.694	83.078	0					101	32	5	0	0	0	0.50999	1	8476	8476		52.937	6.9847	1	13415000	+		33761	29349	27814	27839	37146	37146					0.09751738480099448
LPKLYVKL	8	Unmodified	_LPKLYVKL_					0	0	0		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF;ENST00000471178.2_1_19:35024355-35024547:-|nuORF;ENST00000465478.1_1_8:93156318-93156576:-|nuORF;ENST00000480579.2_1_8:119774141-119774438:-|nuORF	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-MSMS	OvCa99_classI_Rep5	1	487.3273620605469	2	487.325871	972.637189	2.3352	0.001138	0.11407	5.5591E-05	2.4493	0.0011936	487.3257533939996	96.468	0.88171	96.468	96.253	97.135	0					54	20	4	0	0	0	0.30448	2	10561	10561;10589		106.42	23.128	1	2413800			33762	8740	27815	27840	37147;37148	37147					0.14977586247414365
LPKNVLSA	8	Unmodified	_LPKNVLSA_					0	0	0			REV__ENSG00000180999|ENST00000367727|C1orf105	REV__ENSG00000180999|ENST00000367727|C1orf105	MULTI-MSMS	OvCa9_classI_Rep2	2	421.25921630859375	2	421.260728	840.506903	0.1688	7.111E-05	-3.1201	-0.0013144	-2.9513	-0.0012433	421.2592965587955	134.89	1.4682	134.66	133.66	135.13	-0.22696					55	29	3	0	0	0	0.75006	1	13331	13331		16.473	0	1	378840	+		33763	22212	27816	27841	37149	37149					0.08026990248413313
LPKNYQVGIRQ	11	Unmodified	_LPKNYQVGIRQ_					0	0	0		ENST00000335508.10_1_2:198274706-198281520:-|nuORF	ENST00000335508.10_1_2:198274706-198281520:-|nuORF	ENST00000335508.10_1_2:198274706-198281520:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	439.556640625	3	439.254216	1314.74082	1.0513	0.00046179	-2.5439	-0.0011174	-1.4926	-0.00065564	439.5874090383671	30.783	0.4457	30.783	30.582	31.027	0					10	8	2	0	0	0	0.026145	1	1237	1237		23.378	0	1	19262			33764	10497	27817	27842	37150	37150					0.09603841617126818
LPKPEKSSGS	10	Unmodified	_LPKPEKSSGS_					0	0	0		TNKS1BP1|p.P1702L|1|0.13|ENSG00000149115|chr11:57300908-57300908|G/A|missense_variant	TNKS1BP1|p.P1702L|1|0.13|ENSG00000149115|chr11:57300908-57300908|G/A|missense_variant	TNKS1BP1|p.P1702L|1|0.13|ENSG00000149115|chr11:57300908-57300908|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.3047485351562	2	515.282389	1028.55022	-0.18717	-9.6445E-05	0.068266	3.5176E-05	-0.1189	-6.1269E-05	515.2822515729106	52.895	0.6516	52.895	52.653	53.305	0					21	14	2	0	0	0	0.027088	1	4168	4168		19.997	0.6368	1	658990			33765	32971	27818	27843	37151	37151					0.03709135235044414
LPKPEVISQL	10	Unmodified	_LPKPEVISQL_					0	0	0		ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	ENSG00000278129|ENST00000621650|ZNF8	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3453979492188	2	562.339707	1122.66486	2.5554	0.001437	3.9669	0.0022307	6.5223	0.0036677	562.341833951132	139.43	3.4203	137.93	136.47	139.89	-1.4952					166	69	3	0	0	0	0.75313	1	13615	13615		24.519	0.99649	1	141360			33766	9589	27819	27844	37152	37152					0.10843444716988415
LPKPPGRGV	9	Unmodified	_LPKPPGRGV_					0	0	0		ENST00000526524.5_1_8:145579333-145580709:-|nuORF;nc|ENSG00000182325|Q8N531-2|FBXL6;ENSG00000182325|ENST00000331890|FBXL6	ENST00000526524.5_1_8:145579333-145580709:-|nuORF	ENST00000526524.5_1_8:145579333-145580709:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	460.78802490234375	2	460.787444	919.560336	-0.83883	-0.00038652	0.70542	0.00032505	-0.13342	-6.1477E-05	460.7876066741089	52.432	2.375	49.224	48.387	50.762	-3.208					112	46	4	0	0	0	0.34496	2	3154	3131;3154		57.811	3.0466	1	572840			33767	7993	27820	27845	37153;37154	37154					0.09733787750951706
LPKPRRRL	8	Unmodified	_LPKPRRRL_					0	0	0			REV__ENST00000539777.5_1_1:168105623-168105902:-|nuORF	REV__ENST00000539777.5_1_1:168105623-168105902:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.7803344726562	2	518.348535	1034.68252	0.62646	0.00032473	-1.0639	-0.00055148	-0.43744	-0.00022675	518.3477282169135	40.951	1.0338	38.242	37.897	38.931	-2.7097					29	20	2	0	0	0	0.028476	1	2159	2159		13.775	5.544	1	11822	+		33768	27340	27821	27846	37155	37155					0.1665624955317071
LPKPSILPSV	10	Unmodified	_LPKPSILPSV_					0	0	0			REV__ENST00000590056.1_1_18:61033898-61034411:-|nuORF	REV__ENST00000590056.1_1_18:61033898-61034411:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.2932739257812	2	525.831517	1049.64848	-1.3482	-0.00070891	-1.6088	-0.00084598	-2.957	-0.0015549	525.8303971213276	40.557	1.3024	37.603	37.368	38.671	-2.9541					52	24	4	0	0	0	0.027021	1	1739	1739		21.96	0	1	188520	+		33769	18448	27822	27847	37156	37156					0.12564363550882263
LPKQLHLSK	9	Unmodified	_LPKQLHLSK_					0	0	0			REV__ENSG00000117597|ENST00000491415|UTP25	REV__ENSG00000117597|ENST00000491415|UTP25	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.3336181640625	2	532.334759	1062.65496	-1.9761	-0.0010519	1.7117	0.00091122	-0.26435	-0.00014072	532.3355365435302	42.415	1.0279	39.435	39.167	40.195	-2.9804					63	19	4	0	0	0	0.37182	1	1966	1966		54.722	10.606	1	369130	+		33770	18360	27823	27848	37157	37157					0.1261430150225351
LPKQPPLAL	9	Unmodified	_LPKQPPLAL_					0	0	0		ENST00000469916.1_1_6:13622596-13632772:-|nuORF;nc|ENSG00000010017|Q96S59-2|RANBP9;nc|ENSG00000010017|Q96S59-3|RANBP9;ENSG00000010017|ENST00000011619|RANBP9	ENST00000469916.1_1_6:13622596-13632772:-|nuORF	ENST00000469916.1_1_6:13622596-13632772:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	488.8124084472656	2	488.813128	975.611703	0.18287	8.9389E-05	-0.62538	-0.00030569	-0.44251	-0.0002163	488.81275684815193	93.66	2.3696	92.554	92.167	94.537	-1.1057					106	46	4	0	0	0	0.032351	5	8361	8350;8355;8361;8367;8375		133.47	59.494	1	1279600			33771	936	27824	27849	37158;37159;37160;37161;37162	37160					0.1229211172496889
LPKQPPLAL	9	Unmodified	_LPKQPPLAL_					0	0	0		ENST00000469916.1_1_6:13622596-13632772:-|nuORF;nc|ENSG00000010017|Q96S59-2|RANBP9;nc|ENSG00000010017|Q96S59-3|RANBP9;ENSG00000010017|ENST00000011619|RANBP9	ENST00000469916.1_1_6:13622596-13632772:-|nuORF	ENST00000469916.1_1_6:13622596-13632772:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	488.81353759765625	2	488.813128	975.611703	-1.0565	-0.00051641	0.7789	0.00038074	-0.27756	-0.00013568	488.8134343627126	94.404	2.302	92.508	92.102	94.404	-1.8956					112	45	4	0	0	0	0.032351	7	6110	6085;6088;6094;6100;6110;6116;6122		133.47	48.261	1	1670200			33772	936	27824	27849	37163;37164;37165;37166;37167;37168;37169	37167					0.1229211172496889
LPKQPPLAL	9	Unmodified	_LPKQPPLAL_					0	0	0		ENST00000469916.1_1_6:13622596-13632772:-|nuORF;nc|ENSG00000010017|Q96S59-2|RANBP9;nc|ENSG00000010017|Q96S59-3|RANBP9;ENSG00000010017|ENST00000011619|RANBP9	ENST00000469916.1_1_6:13622596-13632772:-|nuORF	ENST00000469916.1_1_6:13622596-13632772:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.8138122558594	2	488.813128	975.611703	-0.59677	-0.00029171	0.20727	0.00010132	-0.3895	-0.00019039	488.8131759786875	95.004	2.3152	92.535	92.11	94.425	-2.4685					112	45	4	0	0	0	0.032351	6	8336	8325;8336;8348;8361;8376;8388		133.47	48.261	1	1613200			33773	936	27824	27849	37170;37171;37172;37173;37174;37175	37171					0.1229211172496889
LPKQVAWIL	9	Unmodified	_LPKQVAWIL_					0	0	0		ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;YY1AP1|p.N771Tfs*7|1|0.1|ENSG00000163374|chr1:155659736-155659736|T/-|frameshift_variant;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;ENST00000442834.6_1_1:155629450-155640310:-|nuORF;ENST00000493625.5_1_1:155631183-155640238:-|nuORF;YY1AP1-ARHGEF2|2|fusion;YY1AP1-ARHGEF2|3|fusion;YY1AP1-ARHGEF2|1|fusion;YY1AP1-ARHGEF2|14|fusion;YY1AP1-ARHGEF2|13|fusion;YY1AP1-ARHGEF2|8|fusion;YY1AP1-ARHGEF2|7|fusion;YY1AP1-ARHGEF2|16|fusion;YY1AP1-ARHGEF2|15|fusion;YY1AP1-ARHGEF2|4|fusion;YY1AP1-ARHGEF2|6|fusion;YY1AP1-ARHGEF2|5|fusion;YY1AP1-ARHGEF2|12|fusion;YY1AP1-ARHGEF2|11|fusion;YY1AP1-ARHGEF2|10|fusion;YY1AP1-ARHGEF2|9|fusion;ARHGEF2-GON4L|1|fusion;ARHGEF2-GON4L|2|fusion;ARHGEF2-GON4L|3|fusion	ENSG00000116580|ENST00000368331|GON4L;YY1AP1-ARHGEF2|2|fusion;ARHGEF2-GON4L|1|fusion	YY1AP1-ARHGEF2|2|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.2478637695312	2	534.334227	1066.6539	-0.71268	-0.00038081	3.1717	0.0016947	2.459	0.0013139	534.335737755802	112.27	0.82642	110.76	110.37	111.2	-1.5111					32	15	3	0	0	0	0.027441	1	10368	10368		42.474	0	1	82876			33774	36311;112;3187	27825	27850	37176	37176					0.12324087133356443
LPKRENFPVLI	11	Unmodified	_LPKRENFPVLI_					0	0	0			REV__tr|A0A7D6VSL5|A0A7D6VSL5_9CLOTtRNA2-thiocytidinebiosynthesisproteinTtcAOS=ClostridiumintestinaleOX=36845GN=HZF06_17100PE=4SV=1	REV__tr|A0A7D6VSL5|A0A7D6VSL5_9CLOTtRNA2-thiocytidinebiosynthesisproteinTtcAOS=ClostridiumintestinaleOX=36845GN=HZF06_17100PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	442.6016540527344	3	442.602845	1324.78671	0.47842	0.00021175	-2.7118	-0.0012002	-2.2334	-0.00098849	442.60159734649346	49.766	2.5262	47.006	46.523	49.049	-2.7603					125	50	5	0	0	0	0.67712	1	3229	3229		37.508	3.5865	1	549840	+		33775	31516	27826	27851	37177	37177					0.13730486799363462
LPKRKSPQV	9	Unmodified	_LPKRKSPQV_					0	0	0			REV__ENST00000510457.1_1_4:48091737-48136211:-|nuORF	REV__ENST00000510457.1_1_4:48091737-48136211:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	526.8308715820312	2	526.832383	1051.65021	2.3316	0.0012284	3.4418	0.0018132	5.7734	0.0030416	526.8339297334799	75.147	0.76189	75.147	74.761	75.523	0					50	18	4	0	0	0	0.38969	1	7464	7464		52.937	3.4007	1	2277300	+		33776	16958	27827	27852	37178	37178					0.12645417359499334
LPKRKSPQV	9	Unmodified	_LPKRKSPQV_					0	0	0			REV__ENST00000510457.1_1_4:48091737-48136211:-|nuORF	REV__ENST00000510457.1_1_4:48091737-48136211:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	526.8318481445312	2	526.832383	1051.65021	-0.02688	-1.4162E-05	2.9838	0.001572	2.9569	0.0015578	526.8321214850487	69.898	2.0087	67.178	66.856	68.864	-2.7196					118	39	6	0	0	0	0.53483	1	3213	3213		39.253	5.7372	1	1842000	+		33777	16958	27827	27852	37179	37179					0.12645417359499334
LPKSPPYTAF	10	Unmodified	_LPKSPPYTAF_					0	0	0		ENST00000432307.1_1_X:110864088-110864580:-|nuORF;ENSG00000063046|ENST00000262056|EIF4B;nc|ENSG00000063046|P23588-2|EIF4B	ENST00000432307.1_1_X:110864088-110864580:-|nuORF	ENST00000432307.1_1_X:110864088-110864580:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	560.8035888671875	2	560.8055	1119.59645	1.371	0.00076885	-2.2695	-0.0012728	-0.89852	-0.0005039	560.8043857670532	91.694	1.8978	90.458	89.637	91.535	-1.2355					69	35	3	0	0	0	0.15491	3	8136	8130;8136;8141		101.25	33.759	1	601850			33778	1283	27828	27853	37180;37181;37182	37181					0.04143200137127678
LPKSPPYTAF	10	Unmodified	_LPKSPPYTAF_					0	0	0		ENST00000432307.1_1_X:110864088-110864580:-|nuORF;ENSG00000063046|ENST00000262056|EIF4B;nc|ENSG00000063046|P23588-2|EIF4B	ENST00000432307.1_1_X:110864088-110864580:-|nuORF	ENST00000432307.1_1_X:110864088-110864580:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	560.8056640625	2	560.8055	1119.59645	-1.5985	-0.00089642	-0.57723	-0.00032372	-2.1757	-0.0012201	560.8052462118424	92.464	1.8281	90.44	89.737	91.565	-2.0241					81	37	3	0	0	0	0.09252	4	5870	5857;5864;5870;5876		115.49	41.861	1	891140			33779	1283	27828	27853	37183;37184;37185;37186	37185					0.04143200137127678
LPKSPPYTAF	10	Unmodified	_LPKSPPYTAF_					0	0	0		ENST00000432307.1_1_X:110864088-110864580:-|nuORF;ENSG00000063046|ENST00000262056|EIF4B;nc|ENSG00000063046|P23588-2|EIF4B	ENST00000432307.1_1_X:110864088-110864580:-|nuORF	ENST00000432307.1_1_X:110864088-110864580:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.8067016601562	2	560.8055	1119.59645	0.24825	0.00013922	-1.4378	-0.00080633	-1.1896	-0.00066711	560.8048660814683	92.874	1.735	90.366	89.704	91.439	-2.5072					80	35	4	0	0	0	0.11632	2	8068	8068;8078		109.48	32.704	1	772640			33780	1283	27828	27853	37187;37188	37187					0.04143200137127678
LPKSTPLPRA	10	Unmodified	_LPKSTPLPRA_					0	0	0			REV__nc|ENSG00000152467|Q8NBB4-2|ZSCAN1	REV__nc|ENSG00000152467|Q8NBB4-2|ZSCAN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.3146362304688	2	540.332216	1078.64988	-3.0449	-0.0016453	0.85262	0.0004607	-2.1923	-0.0011846	540.8344443961629	88.236	1.2614	85.633	84.723	85.984	-2.6027					31	24	2	0	0	0	0.026915	1	7537	7537		27.882	0	1	16111	+		33781	28932	27829	27854	37189	37189					0.11369997639667417
LPKSTPLPRA	10	Unmodified	_LPKSTPLPRA_					0	0	0			REV__nc|ENSG00000152467|Q8NBB4-2|ZSCAN1	REV__nc|ENSG00000152467|Q8NBB4-2|ZSCAN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	540.332216	1078.64988	-0.55333	-0.00029898	-0.65633	-0.00035463	-1.2097	-0.00065361	540.3320212192228	86.653	0.52843	85.222	84.962	85.491	-1.4311	-0.14793	-0.00043969	NaN	20.947	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15313	+		33782	28932	27829	27854							0.11369997639667417
LPKTGTVSL	9	Unmodified	_LPKTGTVSL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.2801208496094	2	458.279118	914.543683	-0.22482	-0.00010303	0.17993	8.246E-05	-0.044886	-2.0571E-05	458.27908027187215	76.243	1.3813	73.304	73.033	74.414	-2.9389					65	28	4	0	0	0	0.1804	1	6039	6039		79.713	0	1	477610			33783	7034	27830	27855	37190	37190					0.08299242074338053
LPKTGTVSL	9	Unmodified	_LPKTGTVSL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	458.279118	914.543683	0.1163	5.3298E-05	-0.12268	-5.6221E-05	-0.0063781	-2.9229E-06	458.27893111278024	75.324	2.1255	73.47	72.913	75.038	-1.854	0.083131	-0.00016419	NaN	79.713	65	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187880			33784	7034	27830	27855							0.08299242074338053
LPKTTALEL	9	Unmodified	_LPKTTALEL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	OvCa9_classI_Rep2	2	493.3002014160156	2	493.30005	984.585547	1.5276	0.00075355	-2.1016	-0.0010367	-0.57398	-0.00028315	493.2989778835464	91.393	1.4759	90.158	89.954	91.43	-1.2355					53	27	2	0	0	0	0.094616	2	8101	8101;8112		98.629	5.4339	1	769980			33785	5987	27831	27856	37191;37192	37191					0.09263797762832837
LPKTTALEL	9	Unmodified	_LPKTTALEL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	OvCa9_classI_Rep3	3	493.30047607421875	2	493.30005	984.585547	-1.4296	-0.00070521	-0.69429	-0.00034249	-2.1239	-0.0010477	493.2995518926899	92.136	1.2761	90.112	89.89	91.166	-2.0241					51	26	2	0	0	0	0.070405	3	5820	5820;5828;5834		107.01	22.092	1	1209500			33786	5987	27831	27856	37193;37194;37195	37193					0.09263797762832837
LPKTTALEL	9	Unmodified	_LPKTTALEL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.30120849609375	2	493.30005	984.585547	-0.68607	-0.00033844	0.057432	2.8331E-05	-0.62864	-0.00031011	493.30003291190627	92.643	1.2824	90.136	89.857	91.14	-2.5072					48	25	2	0	0	0	0.1149	2	8053	8042;8053		93.143	2.3666	1	1068700			33787	5987	27831	27856	37196;37197	37197					0.09263797762832837
LPLAVSLKP	9	Unmodified	_LPLAVSLKP_					0	0	0		ENSG00000099904|ENST00000334554|ZDHHC8;nc|ENSG00000099904|Q9ULC8-2|ZDHHC8;nc|ENSG00000099904|Q9ULC8-3|ZDHHC8	ENSG00000099904|ENST00000334554|ZDHHC8	ENSG00000099904|ENST00000334554|ZDHHC8	MULTI-SECPEP	OvCa9_classI_Rep2	2	469.294921875	2	469.307678	936.600803	-1.0454	-0.0004906	1.3179	0.00061849	0.27252	0.00012789	469.3088964396681	102.8	0.2956	102.11	101.93	102.23	-0.68459					10	5	3	0	0	0	0.027462	1	9465	9465		53.351	9.2347	1	12351			33788	1986	27832	27857	37198	37198					0.12996709350704805
LPLELGEA	8	Unmodified	_LPLELGEA_					0	0	0		ENST00000492092.1_1_22:50644878-50655786:+|nuORF;ENST00000380903.6_1_22:50639465-50655786:+|nuORF;ENSG00000073169|ENST00000380903|SELENOO	ENST00000492092.1_1_22:50644878-50655786:+|nuORF	ENST00000492092.1_1_22:50644878-50655786:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	421.2525329589844	2	421.236919	840.459284	0.32731	0.00013788	-3.2195	-0.0013562	-2.8922	-0.0012183	421.23533630034854	45.071	0.35958	45.071	44.886	45.245	0					10	7	2	0	0	0	0.028476	1	3091	3091		13.775	0	1	88838			33789	1489	27833	27858	37199	37199					0.03267291257566285
LPLELIESI	9	Unmodified	_LPLELIESI_					0	0	0			REV__tr|A0A553SH67|A0A553SH67_NIACIRNApolymerasesigmafactorSigWOS=NialliacirculansOX=1397GN=sigWPE=3SV=1	REV__tr|A0A553SH67|A0A553SH67_NIACIRNApolymerasesigmafactorSigWOS=NialliacirculansOX=1397GN=sigWPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.8053588867188	2	513.807708	1025.60086	-4.4374	-0.00228	-1.0172	-0.00052265	-5.4546	-0.0028026	513.8070510950622	154.42	0.79947	152.97	152.74	153.54	-1.4516					32	18	3	0	0	0	0.6959	1	15278	15278		19.36	4.6959	1	93312	+		33790	29776	27834	27859	37200	37200					0.08908664560044599
LPLFPRGSR	9	Unmodified	_LPLFPRGSR_					0	0	0			REV__ENSG00000161509|ENST00000293190|GRIN2C	REV__ENSG00000161509|ENST00000293190|GRIN2C	MULTI-MSMS	OvCa9_classI_Rep2	2	521.8141479492188	2	521.811451	1041.60835	-0.83564	-0.00043605	3.6163	0.001887	2.7806	0.001451	521.8134554363941	67.923	3.082	65.262	64.842	67.924	-2.661					124	61	3	0	0	0	0.63422	1	5411	5411		27.882	4.8398	1	4500900	+		33791	20697	27835	27860	37201	37201					0.08920861671003877
LPLGPDQQP	9	Unmodified	_LPLGPDQQP_					0	0	0		ENST00000526352.5_1_11:6621466-6622302:-|nuORF	ENST00000526352.5_1_11:6621466-6622302:-|nuORF	ENST00000526352.5_1_11:6621466-6622302:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	483.2933654785156	2	482.758549	963.502546	-0.71112	-0.0003433	0.74346	0.00035891	0.032337	1.5611E-05	482.7588473189236	94.449	1.2092	92.553	92.204	93.414	-1.8956					49	23	3	0	0	0	0.027448	1	6150	6150		44.117	16.235	1	119530			33792	13214	27836	27861	37202	37202					0.019334810348595965
LPLGPLMDVD	10	Unmodified	_LPLGPLMDVD_					0	0	0		nc|ENSG00000186038|A5X5Y0-6|HTR3E	nc|ENSG00000186038|A5X5Y0-6|HTR3E	nc|ENSG00000186038|A5X5Y0-6|HTR3E	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.7863159179688	2	535.283543	1068.55253	1.0591	0.00056693	4.1618	0.0022278	5.221	0.0027947	535.2858510318376	150.72	0.55003	150.72	150.34	150.89	0					16	10	2	0	0	0	0.026871	1	17654	17654		29.15	0	1	72886			33793	15219	27837	27862	37203	37203					0.020998476484919593
LPLGPRALPS	10	Unmodified	_LPLGPRALPS_					0	0	0		ENST00000525370.5_1_19:50310410-50314932:-|nuORF;nc|ENSG00000010361|Q9BT04-3|FUZ;ENSG00000010361|ENST00000313777|FUZ;ENST00000534138.1_1_19:50311551-50312077:-|nuORF;nc|ENSG00000010361|Q9BT04-2|FUZ	ENST00000525370.5_1_19:50310410-50314932:-|nuORF	ENST00000525370.5_1_19:50310410-50314932:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	510.8129577636719	2	510.813659	1019.61277	-2.5987	-0.0013274	2.6608	0.0013592	0.062078	3.171E-05	510.81485810912824	147.13	0.94724	146.9	146.62	147.57	-0.22696					35	18	3	0	0	0	0.78463	1	14868	14868		20.947	1.8434	1	105990			33794	946	27838	27863	37204	37204					0.10374326093892705
LPLGWDGKRIP	11	Unmodified	_LPLGWDGKRIP_					0	0	0		ENST00000446317.1_1_20:3470413-3470686:-|nuORF	ENST00000446317.1_1_20:3470413-3470686:-|nuORF	ENST00000446317.1_1_20:3470413-3470686:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	417.9104309082031	3	417.91179	1250.71354	-1.7633	-0.00073688	-1.2572	-0.0005254	-3.0205	-0.0012623	417.91121073978496	35.511	1.2418	32.801	32.553	33.795	-2.7097					63	24	4	0	0	0	0.68263	1	1458	1458		45.022	17.975	1	264540			33795	11991	27839	27864	37205	37205					0.09821358076737852
LPLHYTKL	8	Unmodified	_LPLHYTKL_					0	0	0			REV__PAXIP1|p.A840Lfs*22|1|0.08|ENSG00000157212|chr7:154957256-154957256|T/-|frameshift_variant	REV__PAXIP1|p.A840Lfs*22|1|0.08|ENSG00000157212|chr7:154957256-154957256|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	492.79522705078125	2	492.797478	983.580402	-0.61364	-0.0003024	-3.5716	-0.0017601	-4.1853	-0.0020625	492.7955881517548	74.379	1.8789	71.969	71.499	73.378	-2.4106					135	37	6	0	0	0	0.59148	1	3711	3711		65.803	11.039	1	461870	+		33796	29280	27840	27865	37206	37206					0.08795538690890226
LPLIVSLR	8	Unmodified	_LPLIVSLR_					0	0	0			REV__ENST00000592217.2_1_19:46272100-46272424:+|nuORF	REV__ENST00000592217.2_1_19:46272100-46272424:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	455.8075866699219	2	455.807845	909.601138	0.61352	0.00027965	-0.90475	-0.00041239	-0.29123	-0.00013274	455.80730478603016	115.59	1.2364	115.48	115.1	116.33	-0.11777					51	24	3	0	0	0	0.59148	1	11041	11041		65.803	0	1	77399	+		33797	27948	27841	27866	37207	37207					0.14272129070559458
LPLKKDALK	9	Unmodified	_LPLKKDALK_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.M3578Ifs*3|1|0.03|ENSG00000048707|chr1:12369624-12369625|-/TATAT|frameshift_variant;VPS13D|p.G1592Yfs*19|1|0.06|ENSG00000048707|chr1:12282875-12282876|-/TACAAGTGTGACCAGCCGCGCCCAGGCA|frameshift_variant	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.8153686523438	2	513.33951	1024.66447	-0.50627	-0.00025989	0.1295	6.6475E-05	-0.37677	-0.00019341	513.3393684163577	75.496	1.1944	73.642	73.323	74.518	-1.854					41	22	4	0	0	0	0.027462	1	6179	6179		21.96	0	1	137040			33798	1159	27842	27867	37208	37208					0.15312069787773908
LPLKKGNKEP	10	Unmodified	_LPLKKGNKEP_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	OvCa9_classI_Rep3	3	562.3422241210938	2	562.345323	1122.67609	-2.9015	-0.0016316	-0.70711	-0.00039764	-3.6086	-0.0020293	562.3448419475409	142.33	4.504	141.32	140	144.5	-1.0106					205	90	3	0	0	0	0.73378	1	11906	11906		26.693	0	1	106680			33799	4792	27843	27868	37209	37209					0.11966266811123205
LPLKNPTPPHD	11	Unmodified	_LPLKNPTPPHD_					0	0	0		ENST00000398988.7_2_17:25951918-25952683:+|nuORF	ENST00000398988.7_2_17:25951918-25952683:+|nuORF	ENST00000398988.7_2_17:25951918-25952683:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	614.8363037109375	2	614.837862	1227.66117	-2.1634	-0.0013301	2.8782	0.0017696	0.71482	0.0004395	614.8394745817393	38.144	1.0876	35.434	35.173	36.261	-2.7097					55	21	4	0	0	0	0.70587	1	1777	1777		24.519	0	1	117240			33800	11377	27844	27869	37210	37210					0.0564477494312996
LPLKNPTPPHD	11	Unmodified	_LPLKNPTPPHD_					0	0	0		ENST00000398988.7_2_17:25951918-25952683:+|nuORF	ENST00000398988.7_2_17:25951918-25952683:+|nuORF	ENST00000398988.7_2_17:25951918-25952683:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	614.837158203125	2	614.837862	1227.66117	0.7849	0.00048258	-0.35533	-0.00021847	0.42956	0.00026411	614.8375113389421	37.905	1.1426	35.012	34.641	35.784	-2.8925					42	22	3	0	0	0	0.70848	1	1432	1432		23.523	0	1	145230			33801	11377	27844	27869	37211	37211					0.0564477494312996
LPLLDEILN	9	Unmodified	_LPLLDEILN_					0	0	0			REV__tr|A0A7D6ZIP0|A0A7D6ZIP0_9CLOTZf-HC2domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05370PE=4SV=1	REV__tr|A0A7D6ZIP0|A0A7D6ZIP0_9CLOTZf-HC2domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05370PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.3038940429688	2	520.305332	1038.59611	-4.1402	-0.0021542	3.9689	0.0020651	-0.17131	-8.9133E-05	520.3072815468703	153.07	1.2181	151.63	151.24	152.46	-1.4351					76	30	4	0	0	0	0.59259	1	15191	15191		32.812	0.85756	1	318110	+		33802	32064	27845	27870	37212	37212					0.07835780417281057
LPLLINEK	8	Unmodified	_LPLLINEK_					0	0	0			REV__tr|A0A553SQ07|A0A553SQ07_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_15215PE=3SV=1	REV__tr|A0A553SQ07|A0A553SQ07_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_15215PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.29608154296875	2	470.29731	938.580068	0.42479	0.00019978	-3.8931	-0.0018309	-3.4683	-0.0016311	470.29547904277877	21.564	1.9538	20.226	19.77	21.724	-1.3386					105	43	5	0	0	0	0.74971	1	157	157		26.796	2.5934	1	1545000	+		33803	30593	27846	27871	37213	37213					0.10832118971029558
LPLLLARRAKL	11	Unmodified	_LPLLLARRAKL_					0	0	0			REV__ENST00000472410.5_1_1:27687327-27687848:-|nuORF	REV__ENST00000472410.5_1_1:27687327-27687848:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	632.431396484375	2	632.434807	1262.85506	-5.7395	-0.0036299	-0.067111	-4.2443E-05	-5.8066	-0.0036723	632.4345273657251	163.44	1.2114	163.21	162.72	163.93	-0.22696					106	40	3	0	0	0	0.72536	1	16636	16636		10.866	4.5529	1	356230	+		33804	26310	27847	27872	37214	37214					0.2341477616987504
LPLLRSVL	8	Unmodified	_LPLLRSVL_					0	0	0		ENSG00000109133|ENST00000504986|TMEM33;ENSG00000167700|ENST00000301327|MFSD3;ENST00000528047.5_1_8:145734706-145736158:+|nuORF	ENSG00000109133|ENST00000504986|TMEM33;ENSG00000167700|ENST00000301327|MFSD3;ENST00000528047.5_1_8:145734706-145736158:+|nuORF	ENSG00000167700|ENST00000301327|MFSD3	MULTI-MSMS	OvCa9_classI_Rep4_	4	455.8074645996094	2	455.807845	909.601138	-0.095898	-4.3711E-05	0.043885	2.0003E-05	-0.052014	-2.3708E-05	455.8077060684462	117.05	1.4155	115.69	115.25	116.66	-1.3645					59	26	3	0	0	0	0.53252	1	10950	10950		74.255	2.9593	1	95449			33805	6834;2702;13248	27848	27873	37215	37215					0.1427212907054809
LPLLRVLS	8	Unmodified	_LPLLRVLS_					0	0	0		nc|ENSG00000132128|Q15345-3|LRRC41;ENSG00000132128|ENST00000617190|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	nc|ENSG00000132128|Q15345-3|LRRC41	MULTI-MSMS	OvCa9_classI_Rep4_	4	455.8072814941406	2	455.807845	909.601138	-0.095898	-4.3711E-05	0.043885	2.0003E-05	-0.052014	-2.3708E-05	455.8077060684462	117.05	1.4155	115.69	115.25	116.66	-1.3645					59	26	3	0	0	0	0.53531	1	10938	10938		73.975	5.1879	1	95449			33806	4110	27849	27874	37216	37216					0.1427212907054809
LPLLSTLGGLR	11	Unmodified	_LPLLSTLGGLR_					0	0	0		HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|459|3|anti-sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|459|3|anti-sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|459|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	570.35791015625	2	570.360973	1138.70739	-3.6448	-0.0020789	-0.079296	-4.5227E-05	-3.7241	-0.0021241	570.3607585251723	152.95	1.1827	151.52	151.24	152.42	-1.435					78	29	4	0	0	0	0.69808	1	15190	15190		30.318	4.7437	1	189880			33807	14406	27850	27875	37217	37217					0.14358839845226612
LPLLSTLGGLR	11	Unmodified	_LPLLSTLGGLR_					0	0	0		HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|459|3|anti-sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|459|3|anti-sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|459|3|anti-sense	MULTI-MATCH	OvCa9_classI_Rep3	3		2	570.360973	1138.70739	-5.3713	-0.0030636	1.467	0.00083672	-3.9043	-0.0022269	570.3616841381423	152.59	1.2229	151.62	151.24	152.47	-0.97301	0.049592	0.0011051	NaN	30.318	50	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70998			33808	14406	27850	27875							0.14358839845226612
LPLLYVLF	8	Unmodified	_LPLLYVLF_					0	0	0			REV__ENST00000499291.6_1_12:11709371-11709509:+|nuORF	REV__ENST00000499291.6_1_12:11709371-11709509:+|nuORF	MSMS	OvCa99_classI_Rep5	1	489.3089294433594	2	489.307147	976.599741	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.2	1	115.2	114.7	115.7	0								0	0	0	0.30129	1	13160	13160		24.504	0	1		+		33809	26806	27851	27876	37218	37218					0.11050494981805059
LPLMACLTM	9	Unmodified	_LPLMACLTM_					0	0	0			REV__ENST00000472176.1_1_6:44197340-44197857:+|nuORF	REV__ENST00000472176.1_1_6:44197340-44197857:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	496.7518615722656	2	496.75251	991.490466	1.6561	0.0008227	-3.8073	-0.0018913	-2.1511	-0.0010686	496.75045020009793	138.04	0.52502	138.04	137.78	138.31	0					32	11	4	0	0	0	0.53957	1	16123	16123		38.806	1.647	1	223740	+		33810	18116	27852	27877	37219	37219					-0.0056191829586396125
LPLNKPNYI	9	Unmodified	_LPLNKPNYI_					0	0	0			REV__ENST00000446317.1_1_20:3470413-3470686:-|nuORF	REV__ENST00000446317.1_1_20:3470413-3470686:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.8062744140625	2	536.313492	1070.61243	2.5186	0.0013507	3.3385	0.0017905	5.8571	0.0031412	536.3150586534763	121.59	0.46384	121.59	121.34	121.8	0					17	9	2	0	0	0	0.027462	1	13964	13964		24.203	2.2429	1	172430	+		33811	22360	27853	27878	37220	37220					0.07994906374028687
LPLNLDLSGP	10	Unmodified	_LPLNLDLSGP_					0	0	0			REV__ENST00000394327.2_2_13:25882005-25882071:+|nuORF	REV__ENST00000394327.2_2_13:25882005-25882071:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	519.7937622070312	2	519.795132	1037.57571	-0.83173	-0.00043233	-1.6752	-0.00087074	-2.5069	-0.0013031	519.7941003158112	120.39	3.5079	120.22	119.69	123.2	-0.17137					148	70	4	0	0	0	0.45225	1	11650	11650		60.972	0.85368	1	553870	+		33812	25297	27854	27879	37221	37221					0.05842609757473838
LPLNLDLSGP	10	Unmodified	_LPLNLDLSGP_					0	0	0			REV__ENST00000394327.2_2_13:25882005-25882071:+|nuORF	REV__ENST00000394327.2_2_13:25882005-25882071:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	519.7927856445312	2	519.795132	1037.57571	1.5307	0.00079564	-4.1853	-0.0021755	-2.6546	-0.0013798	519.7927708482009	121.53	4.9018	120.5	119.85	124.76	-1.0286					197	93	4	0	0	0	0.46756	1	9352	9352		58.782	0	1	827300	+		33813	25297	27854	27879	37222	37222					0.05842609757473838
LPLNPVLQTSL	11	Unmodified	_LPLNPVLQTSL_					0	0	0		FAM180A|p.R160Mfs*6|1|0.05|ENSG00000189320|chr7:135734018-135734019|-/CAACA|frameshift_variant;ENSG00000189320|ENST00000338588|FAM180A	FAM180A|p.R160Mfs*6|1|0.05|ENSG00000189320|chr7:135734018-135734019|-/CAACA|frameshift_variant	FAM180A|p.R160Mfs*6|1|0.05|ENSG00000189320|chr7:135734018-135734019|-/CAACA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8554077148438	2	597.858264	1193.70197	-3.1766	-0.0018991	0.037639	2.2503E-05	-3.1389	-0.0018766	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.71789	1	14876	14876		23.523	1.5628	1	436470			33814	8548	27855	27880	37223	37223					0.11287116262769814
LPLPLCVGRV	10	Unmodified	_LPLPLCVGRV_					0	0	0		ENST00000366543.5_2_1:243418487-243418547:-|nuORF	ENST00000366543.5_2_1:243418487-243418547:-|nuORF	ENST00000366543.5_2_1:243418487-243418547:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.3514404296875	2	533.825712	1065.63687	1.5355	0.00081968	-1.3359	-0.00071316	0.19956	0.00010653	534.3271017647855	119.75	0.22422	119.75	119.65	119.88	0					5	4	2	0	0	0	0.026822	1	13760	13760		47.916	0	1	101220			33815	10818	27856	27881	37224	37224					0.10667843255919252
LPLPLKKTNDI	11	Unmodified	_LPLPLKKTNDI_					0	0	0			REV__tr|A0A7D6VMP7|A0A7D6VMP7_9CLOTPAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16200PE=4SV=1	REV__tr|A0A7D6VMP7|A0A7D6VMP7_9CLOTPAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16200PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	626.89111328125	2	626.387188	1250.75982	0.37775	0.00023662	1.472	0.00092202	1.8497	0.0011586	626.3880960980439	164.17	2.6761	164.17	163.08	165.75	0					198	100	2	0	0	0	0.7254	1	19095	19095		10.265	0	1	238040	+		33816	31143	27857	27882	37225	37225					0.14447378188197035
LPLPLVPSTVL	11	Unmodified	_LPLPLVPSTVL_					0	0	0			REV__ENST00000495946.5_1_6:30656307-30656427:-|nuORF	REV__ENST00000495946.5_1_6:30656307-30656427:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	574.8384399414062	2	574.8681	1147.72165	-0.80796	-0.00046447	1.7505	0.0010063	0.94254	0.00054184	574.8693501190214	91.328	0.35294	88.786	88.708	89.061	-2.5425					8	6	2	0	0	0	0.025746	1	7921	7921		25.574	0	1	11687	+		33817	26752	27858	27883	37226	37226					0.15369492273521246
LPLPRDAR	8	Unmodified	_LPLPRDAR_					0	0	0			REV__ENST00000330871.3_1_17:76354168-76354477:-|nuORF	REV__ENST00000330871.3_1_17:76354168-76354477:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	469.294677734375	2	469.282526	936.550499	-0.072274	-3.3917E-05	3.3527	0.0015734	3.2805	0.0015395	469.28404289365784	104.26	0.26159	102.14	101.96	102.22	-2.1192					7	4	2	0	0	0	0.028476	1	9440	9440		45.952	20.502	1	18239	+		33818	24531	27859	27884	37227	37227					0.07968599745549909
LPLPRDAR	8	Unmodified	_LPLPRDAR_					0	0	0			REV__ENST00000330871.3_1_17:76354168-76354477:-|nuORF	REV__ENST00000330871.3_1_17:76354168-76354477:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	469.282526	936.550499	3.4064	0.0015986	2.3993	0.001126	5.8058	0.0027245	469.28261007933855	102.48	0.20998	102.48	102.38	102.59	0	0.17258	-0.00057303	NaN	45.952	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64776	+		33819	24531	27859	27884							0.07968599745549909
LPLPWMWAD	9	Unmodified	_LPLPWMWAD_					0	0	0			REV__ENST00000368037.9_1_1:160797618-160797780:+|nuORF	REV__ENST00000368037.9_1_1:160797618-160797780:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	563.8213500976562	2	564.78097	1127.54739	-0.89941	-0.00050797	-0.39858	-0.00022511	-1.298	-0.00073308	564.7806331585981	77.857	0.99852	75.504	75.1	76.098	-2.3527					37	19	4	0	0	0	0.027462	1	4059	4059		35.201	3.5664	1	50851	+		33820	24912	27860	27885	37228	37228					-0.011284114234740628
LPLPWMWAD	9	Unmodified	_LPLPWMWAD_					0	0	0			REV__ENST00000368037.9_1_1:160797618-160797780:+|nuORF	REV__ENST00000368037.9_1_1:160797618-160797780:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	564.78097	1127.54739	2.9351	0.0016577	-2.4501	-0.0013838	0.48502	0.00027393	564.7788052132156	75.593	0.24054	75.593	75.482	75.723	0	0.044462	-0.0021511	NaN	42.474	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	307700	+		33821	24912	27860	27885							-0.011284114234740628
LPLQGIVNI	9	Unmodified	_LPLQGIVNI_					0	0	0		tr|A0A7D6ZGH3|A0A7D6ZGH3_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_18625PE=4SV=1	tr|A0A7D6ZGH3|A0A7D6ZGH3_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_18625PE=4SV=1	tr|A0A7D6ZGH3|A0A7D6ZGH3_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_18625PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	483.80224609375	2	483.80276	965.590967	-1.4011	-0.00067785	1.3728	0.00066416	-0.028299	-1.3691E-05	483.80328713273485	119.78	1.049	118.44	118.19	119.24	-1.3444					43	19	4	0	0	0	0.61208	1	11256	11256		30.504	5.0535	1	133180			33822	35544	27861	27886	37229	37229					0.10679521345332432
LPLQRISTP	9	Unmodified	_LPLQRISTP_					0	0	0		tr|A0A553SRQ0|A0A553SRQ0_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_01525PE=3SV=1	tr|A0A553SRQ0|A0A553SRQ0_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_01525PE=3SV=1	tr|A0A553SRQ0|A0A553SRQ0_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_01525PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	512.8115844726562	2	512.811116	1023.60768	-0.38427	-0.00019706	-0.1168	-5.9898E-05	-0.50107	-0.00025696	512.81100900004	94.582	2.7124	92.687	92.204	94.917	-1.8956					135	53	4	0	0	0	0.13482	1	6104	6104		87.754	0	1	2266000			33823	34287	27862	27887	37230	37230					0.09682022231265819
LPLRAALLL	9	Unmodified	_LPLRAALLL_					0	0	0			REV__ENST00000474157.1_1_7:23286476-23286758:+|nuORF	REV__ENST00000474157.1_1_7:23286476-23286758:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	490.33685302734375	2	490.33677	978.658987	-1.5535	-0.00076172	0.74111	0.00036339	-0.81236	-0.00039833	490.33716888209767	136.71	4.5569	135.62	135.22	139.77	-1.0858					270	92	5	0	0	0	0.65476	1	11335	11335		25.45	1.2474	1	5555400	+		33824	26340	27863	27888	37231	37231					0.16880390995981998
LPLRAKLAT	9	Unmodified	_LPLRAKLAT_					0	0	0			REV__ENST00000299697.11_1_16:66544665-66544833:-|nuORF	REV__ENST00000299697.11_1_16:66544665-66544833:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	491.82354736328125	2	491.824027	981.633501	0.46179	0.00022712	-0.7084	-0.00034841	-0.24661	-0.00012129	491.82354825905855	68.425	1.4991	65.61	65.262	66.761	-2.8144					71	29	4	0	0	0	0.59983	1	2964	2964		31.955	1.4512	1	317880	+		33825	24224	27864	27889	37232	37232					0.14194916473547892
LPLRGALLLF	10	Unmodified	_LPLRGALLLF_					0	0	0			REV__GPNMB|p.A15G|1|0.04|ENSG00000136235|chr7:23246901-23246901|C/G|missense_variant	REV__GPNMB|p.A15G|1|0.04|ENSG00000136235|chr7:23246901-23246901|C/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	556.791259765625	2	556.863152	1111.71175	-0.16481	-9.1779E-05	3.7545	0.0020908	3.5897	0.001999	556.8652019475743	67.55	0.49599	64.889	64.594	65.09	-2.661					11	9	2	0	0	0	0.026915	1	5259	5259		27.882	0	1	12426	+		33826	28161	27865	27890	37233	37233					0.16036349058776977
LPLRGPLL	8	Unmodified	_LPLRGPLL_					0	0	0			REV__ENST00000389082.9_1_12:31743653-31743836:-|nuORF	REV__ENST00000389082.9_1_12:31743653-31743836:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	439.7956848144531	2	439.794738	877.574923	1.2945	0.00056932	-1.0724	-0.00047163	0.22213	9.769E-05	439.79412417711336	110.95	1.5288	110.81	110.34	111.86	-0.13961					80	30	4	0	0	0	0.49583	3	10488	10453;10462;10488		77.944	20.491	1	290020	+		33827	24477	27866	27891	37234;37235;37236	37236					0.13123859899098989
LPLRGPLL	8	Unmodified	_LPLRGPLL_					0	0	0			REV__ENST00000389082.9_1_12:31743653-31743836:-|nuORF	REV__ENST00000389082.9_1_12:31743653-31743836:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	439.7947082519531	2	439.794738	877.574923	2.1512	0.00094608	-2.0115	-0.00088466	0.13966	6.1422E-05	439.7937294670286	112.09	1.5248	110.98	110.55	112.07	-1.1038					83	30	4	0	0	0	0.52992	2	8185	8167;8185		74.517	8.6191	1	308550	+		33828	24477	27866	27891	37237;37238	37238					0.13123859899098989
LPLRGPLL	8	Unmodified	_LPLRGPLL_					0	0	0			REV__ENST00000389082.9_1_12:31743653-31743836:-|nuORF	REV__ENST00000389082.9_1_12:31743653-31743836:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	439.794677734375	2	439.794738	877.574923	0.19169	8.4303E-05	-0.20589	-9.0551E-05	-0.014207	-6.2481E-06	439.79451084095996	112.55	1.498	111.04	110.63	112.13	-1.5111					78	29	4	0	0	0	0.59103	3	10409	10409;10434;10446		65.897	7.7449	1	384560	+		33829	24477	27866	27891	37239;37240;37241	37239					0.13123859899098989
LPLRKLYE	8	Unmodified	_LPLRKLYE_					0	0	0			REV__ENST00000468457.1_1_1:93583908-93584959:+|nuORF	REV__ENST00000468457.1_1_1:93583908-93584959:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.31396484375	2	516.316035	1030.61752	-5.454	-0.002816	1.4276	0.00073712	-4.0264	-0.0020789	516.3166829666766	156.94	1.6079	155.39	155.01	156.62	-1.545					108	44	5	0	0	0	0.75426	1	15502	15502		18.324	0.95945	1	509660	+		33830	19811	27867	27892	37242	37242					0.10343210236646883
LPLRRPTIA	9	Unmodified	_LPLRRPTIA_					0	0	0			REV__nc|ENSG00000172766|Q6N069-5|NAA16	REV__nc|ENSG00000172766|Q6N069-5|NAA16	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.8120727539062	2	518.834926	1035.6553	-0.071972	-3.7342E-05	-0.79994	-0.00041503	-0.87191	-0.00045238	518.8342601067275	89.003	1.2297	86.873	86.364	87.594	-2.1309					57	24	4	0	0	0	0.027392	1	5429	5429		73.975	15.193	1	36555	+		33831	21725	27868	27893	37243	37243					0.13889721222130902
LPLRRPTIA	9	Unmodified	_LPLRRPTIA_					0	0	0			REV__nc|ENSG00000172766|Q6N069-5|NAA16	REV__nc|ENSG00000172766|Q6N069-5|NAA16	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.8125610351562	2	518.834926	1035.6553	-1.4059	-0.0007294	-2.0623	-0.00107	-3.4682	-0.0017994	518.8339670825701	88.864	0.35062	86.261	86.034	86.385	-2.6027					9	6	2	0	0	0	0.027433	1	7584	7584		60.972	9.6365	1	30138	+		33832	21725	27868	27893	37244	37244					0.13889721222130902
LPLRVCKML	9	Unmodified	_LPLRVCKML_					0	0	0			REV__ENSG00000187961|ENST00000338591|KLHL17	REV__ENSG00000187961|ENST00000338591|KLHL17	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.8200073242188	2	536.822115	1071.62968	1.7675	0.00094886	-1.4737	-0.0007911	0.29387	0.00015775	537.3224310050532	108.82	0.25853	108.82	108.71	108.97	0					7	5	2	0	0	0	0.027462	1	12313	12313		17.365	1.7232	1	97663	+		33833	22679	27869	27894	37245	37245					0.09672787383829018
LPLSGKLFMLF	11	Unmodified	_LPLSGKLFMLF_					0	0	0			REV__nc|ENSG00000125630|Q9H9Y6-5|POLR1B	REV__nc|ENSG00000125630|Q9H9Y6-5|POLR1B	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3743896484375	2	633.369952	1264.72535	-4.5141	-0.0028591	3.2944	0.0020866	-1.2197	-0.00077254	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.70518	1	15701	15701		27.882	7.8855	1	369460	+		33834	28833	27870	27895	37246	37246					0.1035783877571248
LPLSMEAKI	9	Unmodified	_LPLSMEAKI_					0	0	0		nc|ENSG00000124782|Q92766|RREB1;ENSG00000124782|ENST00000379938|RREB1;nc|ENSG00000124782|Q92766-5|RREB1;nc|ENSG00000124782|Q92766-3|RREB1;RREB1|p.K721Rfs*20|1|0.04|ENSG00000124782|chr6:7230259-7230260|-/CGATCTTC|frameshift_variant;RREB1|p.S954Vfs*10|1|0.06|ENSG00000124782|chr6:7230957-7230958|-/AGTAGCTTTG|frameshift_variant	nc|ENSG00000124782|Q92766|RREB1	nc|ENSG00000124782|Q92766|RREB1	MULTI-MSMS	OvCa99_classI_Rep5	1	501.2903137207031	2	501.288628	1000.5627	-0.62998	-0.0003158	4.3259	0.0021685	3.6959	0.0018527	501.29070586959676	24.964	0.85498	24.964	24.788	25.643	0					29	16	2	0	0	0	0.48324	1	508	508		44.117	3.3386	1	196830			33835	3678	27871	27896	37247	37247					0.06244455373735036
LPLSPPEPSL	10	Unmodified	_LPLSPPEPSL_					0	0	0		ENST00000487247.5_1_7:75612754-75613000:+|nuORF	ENST00000487247.5_1_7:75612754-75613000:+|nuORF	ENST00000487247.5_1_7:75612754-75613000:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.772705078125	2	525.297507	1048.58046	2.9043	0.0015256	-0.83043	-0.00043622	2.0739	0.0010894	525.2968797671459	97.814	0.34535	97.814	97.566	97.912	0					12	7	2	0	0	0	0.026915	1	10734	10734		20.947	0	1	228300			33836	12639	27872	27897	37248	37248					0.05811493900228015
LPLSPPPHI	9	Unmodified	_LPLSPPPHI_					0	0	0			REV__ENST00000503005.1_1_5:180684052-180687322:-|nuORF	REV__ENST00000503005.1_1_5:180684052-180687322:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	485.78857421875	2	485.789653	969.564752	-1.1407	-0.00055413	-3.3236	-0.0016146	-4.4643	-0.0021687	485.7879140600141	87.774	2.3065	85.597	84.985	87.291	-2.1768					97	45	4	0	0	0	0.52083	1	5330	5330		40.573	3.4135	1	1238400	+		33837	22379	27873	27898	37249	37249					0.07875252173846548
LPLTLIVIE	9	Unmodified	_LPLTLIVIE_					0	0	0		nc|ENSG00000141458|O15118-2|NPC1;ENSG00000141458|ENST00000269228|NPC1;ENST00000540608.5_1_18:21119776-21166285:-|nuORF	nc|ENSG00000141458|O15118-2|NPC1	nc|ENSG00000141458|O15118-2|NPC1	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.2597961425781	2	505.828443	1009.64233	-0.77864	-0.00039386	-2.6795	-0.0013553	-3.4581	-0.0017492	505.8269271056895	80.946	1.8818	78.623	78.03	79.912	-2.3226					77	36	4	0	0	0	0.027462	1	4423	4423		24.203	0	1	211310			33838	4917	27874	27899	37250	37250					0.13789845319365668
LPLTSMLPSL	10	Unmodified	_LPLTSMLPSL_					0	0	0		ENSG00000110427|ENST00000658780|KIAA1549L;KIAA1549L|p.E30Gfs*19|1|0.07|ENSG00000110427|chr11:33542543-33542543|A/-|frameshift_variant	ENSG00000110427|ENST00000658780|KIAA1549L	ENSG00000110427|ENST00000658780|KIAA1549L	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2400512695312	2	536.309561	1070.60457	1.8742	0.0010051	3.4194	0.0018338	5.2935	0.002839	536.3110857142628	96.842	0.33976	96.842	96.668	97.008	0					12	7	2	0	0	0	0.026523	1	10631	10631		58.782	20.028	1	111110			33839	2774	27875	27900	37251	37251					0.07209011062241188
LPLVCPLT	8	Unmodified	_LPLVCPLT_					0	0	0			REV__ENST00000342085.8_1_16:2649834-2650143:+|nuORF	REV__ENST00000342085.8_1_16:2649834-2650143:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	428.2568664550781	2	428.254057	854.493561	0.42461	0.00018184	3.6962	0.0015829	4.1208	0.0017647	428.2555300001591	62.05	1.7323	58.592	58.057	59.789	-3.4577					90	35	4	0	0	0	0.67106	1	4295	4295		49.211	1.2952	1	499820	+		33840	24643	27876	27901	37252	37252					0.06049416144821862
LPLVFRIIT	9	Unmodified	_LPLVFRIIT_					0	0	0			REV__ENSG00000129083|ENST00000439561|COPB1	REV__ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.3541870117188	2	536.349877	1070.6852	1.3328	0.00071487	0.80236	0.00043035	2.1352	0.0011452	536.3502106663832	146.5	2.7916	146.5	146.08	148.87	0					135	56	4	0	0	0	0.50066	1	17107	17107		42.474	1.9018	1	2085000	+		33841	18885	27877	27902	37253	37253					0.15268660167453163
LPLVPLRHLL	10	Unmodified	_LPLVPLRHLL_					0	0	0			REV__ENST00000600584.5_1_19:4090598-4094708:-|nuORF	REV__ENST00000600584.5_1_19:4090598-4094708:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.8145141601562	2	585.889701	1169.76485	0.75095	0.00043997	-1.887	-0.0011056	-1.1361	-0.00066563	586.3895212072871	131.81	0.23	131.81	131.67	131.9	0					8	4	2	0	0	0	0.027117	1	15309	15309		23.042	11.531	1	40250	+		33842	28031	27878	27903	37254	37254					0.18675726841456708
LPLWGTILISV	11	Unmodified	_LPLWGTILISV_					0	0	0		ENSG00000144136|ENST00000272542|SLC20A1	ENSG00000144136|ENST00000272542|SLC20A1	ENSG00000144136|ENST00000272542|SLC20A1	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3703002929688	2	606.373549	1210.73255	-3.14	-0.001904	-3.377	-0.0020477	-6.517	-0.0039517	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.70518	1	14848	14848		27.882	11.165	1	257720			33843	5132	27879	27904	37255	37255					0.13560894647821442
LPMAPEEAAR	10	Unmodified	_LPMAPEEAAR_					0	0	0		nc|ENSG00000204540|Q9UIG5-2|PSORS1C1;ENSG00000204540|ENST00000259881|PSORS1C1	nc|ENSG00000204540|Q9UIG5-2|PSORS1C1	nc|ENSG00000204540|Q9UIG5-2|PSORS1C1	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.3217163085938	2	542.776416	1083.53828	2.1557	0.0011701	-3.0339	-0.0016467	-0.87821	-0.00047667	542.7746902516703	95.225	0.37723	95.225	95.033	95.41	0					14	8	2	0	0	0	0.026752	1	10409	10409		35.618	0	1	588860			33844	9001	27880	27905	37256	37256					-0.00014804779789301392
LPMELLAITIY	11	Unmodified	_LPMELLAITIY_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000024146	REV__CON__ENSEMBL:ENSBTAP00000024146	MSMS	OvCa99_classI_Rep5	1	425.9110107421875	3	426.245559	1275.71485	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.935	1	20.935	20.435	21.435	0								0	0	0	0.19474	1	72	72		25.126	6.8639	1		+	+	33845	16174	27881	27906	37257	37257					0.08801811330636156
LPMFLPHAL	9	Unmodified	_LPMFLPHAL_					0	0	0		ENST00000451318.2_1_9:135645025-135645512:-|nuORF	ENST00000451318.2_1_9:135645025-135645512:-|nuORF	ENST00000451318.2_1_9:135645025-135645512:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	519.7936401367188	2	519.793881	1037.57321	1.5307	0.00079564	-1.7782	-0.00092427	-0.24748	-0.00012864	519.7927708482009	121.53	4.9018	120.5	119.85	124.76	-1.0286					197	93	4	0	0	0	0.32242	2	9286	9286;9329		60.404	2.1737	1	827300			33846	12046	27882	27907	37258;37259	37258					0.0559248281881537
LPMGHVLL	8	Unmodified	_LPMGHVLL_					0	0	0			REV__nc|ENSG00000138286|Q96BN6-2|FAM149B1	REV__nc|ENSG00000138286|Q96BN6-2|FAM149B1	MULTI-SECPEP	OvCa9_classI_Rep2	2	439.7939453125	2	440.259674	878.504795	1.2525	0.00055145	-4.4895	-0.0019765	-3.2369	-0.0014251	440.2574904090481	110.55	0.59374	110.38	110.16	110.75	-0.17237					17	11	2	0	0	0	0.028476	1	10453	10453		43.626	8.0078	1	23090	+		33847	19525	27883	27908	37260	37260					0.060682382389586564
LPMGHVLL	8	Unmodified	_LPMGHVLL_					0	0	0			REV__nc|ENSG00000138286|Q96BN6-2|FAM149B1	REV__nc|ENSG00000138286|Q96BN6-2|FAM149B1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	440.259674	878.504795	1.6371	0.00072074	-5.1388	-0.0022624	-3.5018	-0.0015417	440.2573733808183	111.46	0.59447	110.36	110.15	110.75	-1.1038	-0.024535	-0.00051408	NaN	43.626	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19113	+		33848	19525	27883	27908							0.060682382389586564
LPMILDNKL	9	Unmodified	_LPMILDNKL_					0	0	0		ENSG00000146918|ENST00000356309|NCAPG2;nc|ENSG00000146918|Q86XI2-2|NCAPG2;ENST00000467785.5_1_7:158448006-158486027:-|nuORF;NCAPG2|p.T732Lfs*38|1|0.24|ENSG00000146918|chr7:158656572-158656573|-/AA|frameshift_variant;NCAPG2|p.P973Qfs*26|1|0.03|ENSG00000146918|chr7:158652309-158652310|-/CAAATTACATAAAAGATCACAGGCACTT|frameshift_variant;NCAPG2|p.H1004Rfs*7|1|0.31|ENSG00000146918|chr7:158650893-158650896|CGGT/-|frameshift_variant;ENST00000432615.5_1_7:158461124-158468267:-|nuORF	ENSG00000146918|ENST00000356309|NCAPG2;ENST00000432615.5_1_7:158461124-158468267:-|nuORF	ENSG00000146918|ENST00000356309|NCAPG2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.7708129882812	2	528.809728	1055.6049	-0.77775	-0.00041128	2.4357	0.001288	1.658	0.00087674	528.8116379657644	64.025	1.4058	60.55	60.156	61.562	-3.475					43	28	2	0	0	0	0.027448	1	4587	4587		53.351	17.733	1	255150			33849	5318;11813	27884	27909	37261	37261					0.07932430782102529
LPMILDNKL	9	Unmodified	_LPMILDNKL_					0	0	0		ENSG00000146918|ENST00000356309|NCAPG2;nc|ENSG00000146918|Q86XI2-2|NCAPG2;ENST00000467785.5_1_7:158448006-158486027:-|nuORF;NCAPG2|p.T732Lfs*38|1|0.24|ENSG00000146918|chr7:158656572-158656573|-/AA|frameshift_variant;NCAPG2|p.P973Qfs*26|1|0.03|ENSG00000146918|chr7:158652309-158652310|-/CAAATTACATAAAAGATCACAGGCACTT|frameshift_variant;NCAPG2|p.H1004Rfs*7|1|0.31|ENSG00000146918|chr7:158650893-158650896|CGGT/-|frameshift_variant;ENST00000432615.5_1_7:158461124-158468267:-|nuORF	ENSG00000146918|ENST00000356309|NCAPG2;ENST00000432615.5_1_7:158461124-158468267:-|nuORF	ENSG00000146918|ENST00000356309|NCAPG2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	528.809728	1055.6049	-2.3189	-0.0012262	4.4216	0.0023382	2.1027	0.001112	528.8125804164455	63.027	1.5185	60.283	59.695	61.214	-2.7444	-0.13386	0.000556	NaN	90.777	56	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131520			33850	5318;11813	27884	27909							0.07932430782102529
LPMILIAIL	9	Unmodified	_LPMILIAIL_					0	0	0		tr|A0A553SIA8|A0A553SIA8_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_14520PE=3SV=1	tr|A0A553SIA8|A0A553SIA8_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_14520PE=3SV=1	tr|A0A553SIA8|A0A553SIA8_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_14520PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.8316650390625	2	498.829932	995.645311	-0.21545	-0.00010747	3.4041	0.0016981	3.1887	0.0015906	498.8316195195434	72.795	2.813	70.307	69.884	72.697	-2.4873					132	56	5	0	0	0	0.22187	1	3523	3523		72.62	0	1	2522500			33851	33361	27885	27910	37262	37262					0.1473139717252252
LPMKFFTQP	9	Unmodified	_LPMKFFTQP_					0	0	0		ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	ENSG00000121892|ENST00000303538|PDS5A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.8572998046875	2	554.79662	1107.57869	3.811	0.0021143	-3.7758	-0.0020948	0.035264	1.9564E-05	554.7948009917707	133.55	0.38878	132.02	131.8	132.19	-1.5257					14	7	2	0	0	0	0.027462	1	12878	12878		31.955	0	1	13530			33852	3504	27886	27911	37263	37263					0.029201616106320216
LPMLLASLE	9	Unmodified	_LPMLLASLE_					0	0	0		ENST00000477973.3_2_3:72427427-72427478:-|nuORF	ENST00000477973.3_2_3:72427427-72427478:-|nuORF	ENST00000477973.3_2_3:72427427-72427478:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.28631591796875	2	493.783179	985.551804	-0.35034	-0.00017299	3.0588	0.0015104	2.7085	0.0013374	493.7845274449465	48.501	0.64957	45.74	45.478	46.127	-2.7603					24	12	3	0	0	0	0.027462	1	3061	3061		33.516	0	1	74185			33853	12483	27887	27912	37264	37264					0.0584505299942748
LPMVIMQLL	9	Unmodified	_LPMVIMQLL_					0	0	0			REV__tr|A0A553SPU2|A0A553SPU2_NIACIL-cystineuptakeproteinTcyPOS=NialliacirculansOX=1397GN=CEQ21_09270PE=3SV=1	REV__tr|A0A553SPU2|A0A553SPU2_NIACIL-cystineuptakeproteinTcyPOS=NialliacirculansOX=1397GN=CEQ21_09270PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.3408203125	2	529.311049	1056.60755	0.80886	0.00042814	-4.2307	-0.0022394	-3.4218	-0.0018112	529.3085447173164	139.84	0.60822	139.84	139.56	140.17	0					22	12	2	0	0	0	0.027425	1	16321	16321		60.294	5.5293	1	74086	+		33854	30570	27888	27913	37265	37265					0.08150562915420778
LPNAVLTRII	10	Unmodified	_LPNAVLTRII_					0	0	0		POLE3|p.I15L|1|0.1|ENSG00000148229|chr9:113410251-113410251|T/G|missense_variant	POLE3|p.I15L|1|0.1|ENSG00000148229|chr9:113410251-113410251|T/G|missense_variant	POLE3|p.I15L|1|0.1|ENSG00000148229|chr9:113410251-113410251|T/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	555.3531494140625	2	555.355691	1108.69683	-7.0233	-0.0039004	3.381	0.0018777	-3.6422	-0.0020227	555.3574443782504	158.85	1.8694	157.58	157.26	159.13	-1.267					85	36	5	0	0	0	0.5675	1	13721	13721		45.972	0	1	417810			33855	15512	27889	27914	37266	37266					0.14682857190791765
LPNCRRLL	8	Carbamidomethyl (C)	_LPNC(Carbamidomethyl (C))RRLL_	LPNC(1)RRLL		LPNC(83)RRLL		0	1	0		ENST00000426891.1_1_7:64313411-64313693:-|nuORF	ENST00000426891.1_1_7:64313411-64313693:-|nuORF	ENST00000426891.1_1_7:64313411-64313693:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.3016967773438	2	521.302936	1040.59132	-0.85172	-0.00044401	-4.3442	-0.0022646	-5.1959	-0.0027086	521.3005253911093	82.568	1.8052	79.885	79.538	81.343	-2.6829					77	36	4	0	0	0	0.44269	1	6819	6819		83.287	10.408	1	1239900			33856	11746	27890	27915	37267	37267	126				0.07264617793521211
LPNFRLNIS	9	Unmodified	_LPNFRLNIS_					0	0	0			REV__nc|ENSG00000172731|Q8TCA0-3|LRRC20	REV__nc|ENSG00000172731|Q8TCA0-3|LRRC20	MULTI-MSMS	OvCa9_classI_Rep2	2	537.3082885742188	2	537.308741	1072.60293	-1.8394	-0.00098831	1.6403	0.00088134	-0.19909	-0.00010697	537.3095446189913	68.459	1.3908	65.839	65.474	66.865	-2.6203					69	27	4	0	0	0	0.16562	1	5399	5399		82.241	2.5279	1	481520	+		33857	21721	27891	27916	37268	37268					0.06953138088510968
LPNKEQVLL	9	Unmodified	_LPNKEQVLL_					0	0	0		ENSG00000135763|ENST00000258243|URB2;URB2|p.G493Afs*32|1|0.2|ENSG00000135763|chr1:229636089-229636089|G/-|frameshift_variant;URB2|p.L754Gfs*23|1|0.14|ENSG00000135763|chr1:229636872-229636873|-/GGCCAACAACAATATCTACAACATCG|frameshift_variant	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.84814453125	2	527.318774	1052.623	2.5565	0.0013481	-0.01177	-6.2067E-06	2.5447	0.0013419	527.3186276022883	116.07	0.64427	116.07	115.73	116.37	0					21	13	2	0	0	0	0.027462	1	13294	13294		16.473	0	1	279350			33858	4412	27892	27917	37269	37269					0.09878889028482263
LPNKFFAAI	9	Unmodified	_LPNKFFAAI_					0	0	0		tr|A0A553SRT0|A0A553SRT0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01615PE=4SV=1	tr|A0A553SRT0|A0A553SRT0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01615PE=4SV=1	tr|A0A553SRT0|A0A553SRT0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01615PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.84564208984375	2	510.797478	1019.5804	1.758	0.00089798	3.4268	0.0017504	5.1848	0.0026484	511.3028801906217	125.31	0.22392	125.31	125.14	125.37	0					7	5	2	0	0	0	0.027462	1	14478	14478		33.516	1.5607	1	38052			33859	34293	27893	27918	37270	37270					0.07139538690887548
LPNKVVLEVYL	11	Unmodified	_LPNKVVLEVYL_					0	0	0			REV__ENSG00000170043|ENST00000303731|TRAPPC1	REV__ENSG00000170043|ENST00000303731|TRAPPC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	429.2516784667969	3	429.595468	1285.76457	-0.10151	-4.3608E-05	4.4201	0.0018989	4.3186	0.0018552	429.59732918633625	92.288	0.35709	89.745	89.618	89.975	-2.5425					9	6	2	0	0	0	0.025445	1	8004	8004		42.338	24.505	1	18626	+		33860	21510	27894	27919	37271	37271					0.13312262330964586
LPNLGTLTT	9	Unmodified	_LPNLGTLTT_					0	0	0		nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-5|API5;SDHAF2-API5|3|fusion;SDHAF2-API5|2|fusion;nc|ENSG00000166181|Q9BZZ5-6|API5	nc|ENSG00000166181|Q9BZZ5-3|API5	nc|ENSG00000166181|Q9BZZ5-3|API5	MSMS	OvCa9_classI_Rep4_	4	465.27081298828125	2	465.26875	928.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.179	1	57.749	57.249	58.249	-3.43								0	0	0	0.028067	1	4179	4179		90.777	7.4895	1				33861	6648	27895	27920	37272	37272					0.055826516946467564
LPNLKDAEAVQ	11	Unmodified	_LPNLKDAEAVQ_					0	0	0		TOMM20|p.D59N|1|0.35|ENSG00000173726|chr1:235119893-235119893|C/T|missense_variant	TOMM20|p.D59N|1|0.35|ENSG00000173726|chr1:235119893-235119893|C/T|missense_variant	TOMM20|p.D59N|1|0.35|ENSG00000173726|chr1:235119893-235119893|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	599.3335571289062	2	599.327328	1196.6401	0.93062	0.00055775	2.924	0.0017524	3.8546	0.0023102	599.3288601635584	113.17	1.4812	111.73	111.41	112.89	-1.4461					68	29	4	0	0	0	0.68684	1	10470	10470		34.173	2.6427	1	202590			33862	32974	27896	27921	37273	37273					0.04964764843612102
LPNNDLAAN	9	Unmodified	_LPNNDLAAN_					0	0	0			REV__ENSG00000165156|ENST00000395571|ZHX1	REV__ENSG00000165156|ENST00000395571|ZHX1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.2912292480469	2	471.237981	940.461409	0.19633	9.2518E-05	0.10242	4.8262E-05	0.29874	0.00014078	471.2376937951199	46.562	0.41235	43.49	43.346	43.759	-3.0724					11	7	2	0	0	0	0.027353	1	2464	2464		71.877	25.111	1	21983	+		33863	21062	27897	27922	37274	37274					-0.011202800046362427
LPNNIDCPV	9	Carbamidomethyl (C)	_LPNNIDC(Carbamidomethyl (C))PV_	LPNNIDC(1)PV		LPNNIDC(77)PV		0	1	0			REV__nc|ENSG00000171435|Q6VAB6-2|KSR2	REV__nc|ENSG00000171435|Q6VAB6-2|KSR2	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.3011474609375	2	521.255317	1040.49608	-0.88326	-0.00046041	0.86795	0.00045243	-0.015309	-7.9799E-06	521.2541082797552	82.305	0.89441	80.008	79.735	80.629	-2.2963					33	17	3	0	0	0	0.027232	1	4626	4626		76.774	13.468	1	47986	+		33864	21612	27898	27923	37275	37275	241				-0.02254780188195582
LPNNVKTAV	9	Unmodified	_LPNNVKTAV_					0	0	0		ENSG00000261456|ENST00000568584|TUBB8	ENSG00000261456|ENST00000568584|TUBB8	ENSG00000261456|ENST00000568584|TUBB8	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.2828063964844	2	478.282192	954.549831	0.50413	0.00024112	-0.84343	-0.0004034	-0.3393	-0.00016228	478.281682703271	60.501	1.1944	57.071	56.749	57.944	-3.43					50	23	3	0	0	0	0.26076	1	4103	4103		67.494	0	1	436780			33865	9502	27899	27924	37276	37276					0.07073760305854648
LPNNVKTAV	9	Unmodified	_LPNNVKTAV_					0	0	0		ENSG00000261456|ENST00000568584|TUBB8	ENSG00000261456|ENST00000568584|TUBB8	ENSG00000261456|ENST00000568584|TUBB8	MULTI-MATCH	OvCa9_classI_Rep2	2		2	478.282192	954.549831	-0.74942	-0.00035844	0.32995	0.00015781	-0.41947	-0.00020063	478.28252341361014	59.948	1.1986	57.178	56.725	57.923	-2.7702	0.053536	0.00079375	NaN	67.494	37	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65152			33866	9502	27899	27924							0.07073760305854648
LPNNWRVLR	9	Unmodified	_LPNNWRVLR_					0	0	0		ENST00000301061.8_2_12:49359649-49359844:-|nuORF	ENST00000301061.8_2_12:49359649-49359844:-|nuORF	ENST00000301061.8_2_12:49359649-49359844:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	584.3562622070312	2	584.340907	1166.66726	-1.7629	-0.0010301	1.212	0.00070822	-0.55092	-0.00032193	584.3415130260761	145.8	0.25061	144.37	144.29	144.54	-1.4357					6	4	2	0	0	0	0.027462	1	14315	14315		23.042	3.939	1	8651.6			33867	10182	27900	27925	37277	37277					0.09059337965300074
LPNQTHYII	9	Unmodified	_LPNQTHYII_					0	0	0		ENSG00000111670|ENST00000299314|GNPTAB;GNPTAB|p.P558Q|1|0.32|ENSG00000111670|chr12:101765244-101765244|G/T|missense_variant	ENSG00000111670|ENST00000299314|GNPTAB	ENSG00000111670|ENST00000299314|GNPTAB	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.7997436523438	2	549.800749	1097.58694	-1.2325	-0.00067762	-2.0978	-0.0011534	-3.3303	-0.001831	549.7993773701737	43.734	1.4672	40.727	40.483	41.951	-3.0074					74	28	4	0	0	0	0.21231	1	2122	2122		74.255	2.3776	1	577470			33868	2842	27901	27926	37278	37278					0.04205431851596586
LPNRVSMR	8	Unmodified	_LPNRVSMR_					0	0	0		ENST00000579482.5_1_17:72859347-72866165:-|nuORF	ENST00000579482.5_1_17:72859347-72866165:-|nuORF	ENST00000579482.5_1_17:72859347-72866165:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.7740783691406	2	486.774011	971.533469	-0.56981	-0.00027737	0.62019	0.00030189	0.050382	2.4525E-05	486.7741937609849	46.235	1.0864	43.162	42.979	44.065	-3.0724					31	20	2	0	0	0	0.7224	1	2410	2410		38.806	0	1	505100			33869	13980	27902	27927	37279	37279					0.04656355868121409
LPNVARAF	8	Unmodified	_LPNVARAF_					0	0	0		tr|A0A553SJC1|A0A553SJC1_NIACIEsterasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_16480PE=4SV=1	tr|A0A553SJC1|A0A553SJC1_NIACIEsterasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_16480PE=4SV=1	tr|A0A553SJC1|A0A553SJC1_NIACIEsterasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_16480PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	444.25994873046875	2	444.25852	886.502486	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.61	1	103.61	103.11	104.11	0								0	0	0	0.30129	1	11588	11588		74.517	0	1				33870	33488	27903	27928	37280	37280					0.0546952582551512
LPNWDVTYL	9	Unmodified	_LPNWDVTYL_					0	0	0		ENSG00000145107|ENST00000273695|TM4SF19;nc|ENSG00000145107|Q96DZ7-2|TM4SF19;TM4SF19|p.P143Lfs*14|1|0.1|ENSG00000145107|chr3:196324292-196324293|-/ATGCACAGAAGGGCGGAGAAGA|frameshift_variant	ENSG00000145107|ENST00000273695|TM4SF19	ENSG00000145107|ENST00000273695|TM4SF19	MULTI-SECPEP	OvCa9_classI_Rep2	2	559.8253173828125	2	560.787307	1119.56006	-0.28919	-0.00016217	-2.1334	-0.0011964	-2.4225	-0.0013585	560.7858614851269	48.234	0.79778	45.525	45.231	46.029	-2.7097					27	15	2	0	0	0	0.027426	1	2979	2979		35.618	11.099	1	40545			33871	5204	27904	27929	37281	37281					0.005063232404154405
LPPAAYPVGL	10	Unmodified	_LPPAAYPVGL_					0	0	0			REV__TG|p.S2274Lfs*71|1|0.03|ENSG00000042832|chr8:133019639-133019640|-/TG|frameshift_variant	REV__TG|p.S2274Lfs*71|1|0.03|ENSG00000042832|chr8:133019639-133019640|-/TG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	499.76788330078125	2	499.289485	996.564418	-1.1741	-0.0005862	0.81199	0.00040542	-0.36209	-0.00018079	499.2897492262461	102.92	0.88744	102.24	101.98	102.87	-0.68459					30	17	2	0	0	0	0.026672	1	9522	9522		26.796	0	1	44624	+		33872	16644	27905	27930	37282	37282					0.06599832453991894
LPPAGDILPNK	11	Unmodified	_LPPAGDILPNK_					0	0	0		ENSG00000142789|ENST00000290122|CELA3A	ENSG00000142789|ENST00000290122|CELA3A	ENSG00000142789|ENST00000290122|CELA3A	MULTI-SECPEP	OvCa9_classI_Rep3	3	568.7944946289062	2	567.829506	1133.64446	-1.0734	-0.0006095	-3.1732	-0.0018018	-4.2466	-0.0024113	568.3293907157614	101.71	0.21024	100.19	100.06	100.27	-1.5211					5	3	2	0	0	0	0.025611	1	6948	6948		27.882	0	1	4905.4			33873	4995	27906	27931	37283	37283					0.08298274057187882
LPPAIVARTR	10	Unmodified	_LPPAIVARTR_					0	0	0			REV__ENSG00000144229|ENST00000409968|THSD7B	REV__ENSG00000144229|ENST00000409968|THSD7B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.2736206054688	2	547.345658	1092.67676	-1.3294	-0.00072766	0.67838	0.00037131	-0.65104	-0.00035635	547.3460132378518	42.788	0.99731	39.78	39.539	40.536	-3.0074					40	18	3	0	0	0	0.027088	1	2062	2062		34.173	27.437	1	82109	+		33874	19897	27907	27932	37284	37284					0.13413106250823148
LPPAIVARTR	10	Unmodified	_LPPAIVARTR_					0	0	0			REV__ENSG00000144229|ENST00000409968|THSD7B	REV__ENSG00000144229|ENST00000409968|THSD7B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	547.345658	1092.67676	0.85128	0.00046594	-0.98859	-0.0005411	-0.13731	-7.5157E-05	547.3449301898354	42.685	0.73991	39.975	39.769	40.509	-2.7097	0.097432	-0.0013082	NaN	19.997	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33478	+		33875	19897	27907	27932							0.13413106250823148
LPPATSPHPS	10	Unmodified	_LPPATSPHPS_					0	0	0			REV__ENST00000374089.5_1_1:27426540-27426699:-|nuORF	REV__ENST00000374089.5_1_1:27426540-27426699:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.7890319824219	2	502.263999	1002.51345	-1.4368	-0.00072165	-2.8343	-0.0014236	-4.2711	-0.0021452	502.26239258596416	55.372	0.91362	52.077	51.906	52.819	-3.2944					32	17	3	0	0	0	0.026802	1	3568	3568		34.173	19.308	1	155250	+		33876	25058	27908	27933	37285	37285					0.012288834091350509
LPPATSPHPS	10	Unmodified	_LPPATSPHPS_					0	0	0			REV__ENST00000374089.5_1_1:27426540-27426699:-|nuORF	REV__ENST00000374089.5_1_1:27426540-27426699:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	502.263999	1002.51345	-1.6214	-0.00081437	-3.7398	-0.0018784	-5.3612	-0.0026927	502.26211090155965	55.161	1.0434	52.347	52.122	53.165	-2.8139	0.13478	-0.0003916	NaN	25.574	27	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28468	+		33877	25058	27908	27933							0.012288834091350509
LPPEKRKKA	9	Unmodified	_LPPEKRKKA_					0	0	0		tr|A0A553SLE1|A0A553SLE1_NIACIDUF475domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20490PE=3SV=1	tr|A0A553SLE1|A0A553SLE1_NIACIDUF475domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20490PE=3SV=1	tr|A0A553SLE1|A0A553SLE1_NIACIDUF475domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20490PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.8304443359375	2	533.840208	1065.66586	-1.7623	-0.00094077	1.1247	0.00060041	-0.63758	-0.00034037	533.8408987278261	55.576	0.81087	52.282	52.008	52.819	-3.2944					33	15	3	0	0	0	0.027462	1	3547	3547		23.042	3.0457	1	79212			33878	33712	27909	27934	37286	37286					0.1356570387656575
LPPELLGTHR	10	Unmodified	_LPPELLGTHR_					0	0	0		ENST00000560419.1_1_14:75893609-75893885:-|nuORF	ENST00000560419.1_1_14:75893609-75893885:-|nuORF	ENST00000560419.1_1_14:75893609-75893885:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.8056030273438	2	566.827298	1131.64004	1.5291	0.00086673	1.0987	0.0006228	2.6278	0.0014895	566.8278715910204	93.541	0.53647	93.541	93.346	93.883	0					20	12	2	0	0	0	0.026956	1	10151	10151		26.693	5.746	1	1408100			33879	13735	27910	27935	37287	37287					0.0794880963428568
LPPFHKGDLE	10	Unmodified	_LPPFHKGDLE_					0	0	0			REV__ENSG00000126705|ENST00000673934|AHDC1	REV__ENSG00000126705|ENST00000673934|AHDC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.3331298828125	2	576.806031	1151.59751	0.61882	0.00035694	4.1015	0.0023658	4.7203	0.0027227	577.3096322919096	131.83	1.4103	131.83	131.43	132.84	0					66	29	3	0	0	0	0.026582	1	15354	15354		34.173	0	1	466700	+		33880	18791	27911	27936	37288	37288					0.027774145060675437
LPPFIPAL	8	Unmodified	_LPPFIPAL_					0	0	0			REV__ENSG00000179270|ENST00000331664|PCARE	REV__ENSG00000179270|ENST00000331664|PCARE	MULTI-SECPEP	OvCa9_classI_Rep2	2	434.28692626953125	2	434.270564	866.526576	-0.88879	-0.00038598	1.8796	0.00081626	0.99082	0.00043028	434.27008935914813	84.314	0.56828	82.768	82.535	83.104	-1.5462					13	10	2	0	0	0	0.028476	1	7287	7287		43.626	10.133	1	27670	+		33881	22114	27912	27937	37289	37289					0.08797366259182127
LPPFIPAL	8	Unmodified	_LPPFIPAL_					0	0	0			REV__ENSG00000179270|ENST00000331664|PCARE	REV__ENSG00000179270|ENST00000331664|PCARE	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.2889404296875	2	434.270564	866.526576	1.9649	0.0008533	0.96413	0.00041869	2.929	0.001272	434.2693841210818	85.378	0.48135	82.731	82.561	83.042	-2.6463					16	9	2	0	0	0	0.028476	1	7194	7194		33.493	8.989	1	23633	+		33882	22114	27912	27937	37290	37290					0.08797366259182127
LPPFLYPK	8	Unmodified	_LPPFLYPK_					0	0	0			REV__ENST00000438724.5_1_13:79918450-79918871:-|nuORF	REV__ENST00000438724.5_1_13:79918450-79918871:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.8097839355469	2	487.789121	973.56369	1.7633	0.00086013	0.78256	0.00038173	2.5459	0.0012419	487.7897311686147	129.58	2.2753	128.12	127	129.28	-1.4565					65	45	2	0	0	0	0.028476	1	12526	12526		31.579	16.915	1	29008	+		33883	25814	27913	27938	37291	37291					0.0758503780494948
LPPFPRELA	9	Unmodified	_LPPFPRELA_					0	0	0		ENST00000591881.5_1_19:5950841-5951586:-|nuORF;nc|ENSG00000031823|Q9H6Z4-2|RANBP3;ENSG00000031823|ENST00000340578|RANBP3	ENST00000591881.5_1_19:5950841-5951586:-|nuORF	ENST00000591881.5_1_19:5950841-5951586:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	520.30126953125	2	520.300384	1038.58622	1.2388	0.00064456	0.93569	0.00048684	2.1745	0.0011314	520.30077540986	127.82	1.2935	127.82	127.36	128.65	0					54	27	3	0	0	0	0.13154	1	14792	14792		88.643	6.3378	1	561890			33884	1068	27914	27939	37292	37292					0.06846637202579586
LPPGALCEV	9	Unmodified	_LPPGALCEV_					0	0	0		ENSG00000137642|ENST00000260197|SORL1;ENST00000532451.1_1_11:121323091-121416136:+|nuORF;SORL1-SC5DL|1|fusion;SORL1-TECTA|1|fusion;SORL1-TECTA|2|fusion;SORL1-CEP164|1|fusion	ENSG00000137642|ENST00000260197|SORL1;SORL1-CEP164|1|fusion	ENSG00000137642|ENST00000260197|SORL1	MULTI-MSMS	OvCa99_classI_Rep5	1	449.7379455566406	2	449.738771	897.462989	1.883	0.00084684	-3.3704	-0.0015158	-1.4874	-0.00066896	449.73708603336974	147.55	0.92099	147.55	147.26	148.18	0					34	18	3	0	0	0	0.34496	1	17257	17257		57.811	0	1	165470			33885	4603;32844	27915	27940	37293	37293					0.010156377597809296
LPPGFLTTAGP	11	Unmodified	_LPPGFLTTAGP_					0	0	0		ENST00000392357.1_1_17:80012338-80013241:+|nuORF	ENST00000392357.1_1_17:80012338-80013241:+|nuORF	ENST00000392357.1_1_17:80012338-80013241:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.34033203125	2	535.797675	1069.5808	-1.7673	-0.00094692	-2.8461	-0.0015249	-4.6134	-0.0024718	535.7962785955494	49.16	0.29627	46.399	46.226	46.523	-2.7603					7	5	2	0	0	0	0.025611	1	3083	3083		35.618	5.1146	1	9994.1			33886	11218	27916	27941	37294	37294					0.04878913620086678
LPPGFLTTAGP	11	Unmodified	_LPPGFLTTAGP_					0	0	0		ENST00000392357.1_1_17:80012338-80013241:+|nuORF	ENST00000392357.1_1_17:80012338-80013241:+|nuORF	ENST00000392357.1_1_17:80012338-80013241:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	535.797675	1069.5808	-2.941	-0.0015758	-1.6771	-0.00089858	-4.6181	-0.0024744	535.7968283143033	49.315	0.77791	46.174	45.937	46.715	-3.1416	-0.11282	0.00040659	NaN	35.618	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88938			33887	11218	27916	27941							0.04878913620086678
LPPIVKLF	8	Unmodified	_LPPIVKLF_					0	0	0		ENSG00000198793|ENST00000361445|MTOR;MTOR|p.L2016Tfs*10|1|0.16|ENSG00000198793|chr1:11127794-11127795|-/T|frameshift_variant	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	OvCa9_classI_Rep2	2	463.7925109863281	2	463.807314	925.600075	-1.1034	-0.00051178	-4.4684	-0.0020725	-5.5719	-0.0025843	463.8051759568414	55.287	0.5982	52.473	52.172	52.77	-2.8139					19	11	2	0	0	0	0.028476	1	3803	3803		28.254	0	1	22055			33888	8874	27917	27942	37295	37295					0.13429914701657708
LPPKDDAAIV	10	Unmodified	_LPPKDDAAIV_					0	0	0		nc|ENSG00000160326|Q9UGQ3-2|SLC2A6;ENSG00000160326|ENST00000371899|SLC2A6;ENST00000485978.1_1_9:136338979-136343630:-|nuORF	nc|ENSG00000160326|Q9UGQ3-2|SLC2A6	nc|ENSG00000160326|Q9UGQ3-2|SLC2A6	MULTI-MSMS	OvCa9_classI_Rep2	2	519.7933349609375	2	519.795132	1037.57571	-0.83173	-0.00043233	-1.6752	-0.00087074	-2.5069	-0.0013031	519.7941003158112	120.39	3.5079	120.22	119.69	123.2	-0.17137					148	70	4	0	0	0	0.53885	1	11644	11644		49.442	6.5773	1	553870			33889	6059	27918	27943	37296	37296					0.058426097574511004
LPPKQVPVHDS	11	Unmodified	_LPPKQVPVHDS_					0	0	0			REV__ENST00000357429.10_1_7:1036661-1036748:-|nuORF	REV__ENST00000357429.10_1_7:1036661-1036748:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	608.8365478515625	2	608.837862	1215.66117	-2.9862	-0.0018181	1.1827	0.00072007	-1.8035	-0.001098	608.8384409530391	152.11	1.417	150.68	150.29	151.71	-1.435					87	30	4	0	0	0	0.69455	1	15052	15052		31.53	2.3598	1	285950	+		33890	24784	27919	27944	37297	37297					0.061967749431460106
LPPKTSVFV	9	Unmodified	_LPPKTSVFV_					0	0	0		ENSG00000198092|ENST00000356291|TMPRSS11F	ENSG00000198092|ENST00000356291|TMPRSS11F	ENSG00000198092|ENST00000356291|TMPRSS11F	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2723083496094	2	494.29731	986.580068	0.14149	6.994E-05	-3.9135	-0.0019344	-3.772	-0.0018645	494.2953737632848	73.876	0.3472	73.876	73.597	73.945	0					11	8	2	0	0	0	0.027462	1	7267	7267		30.504	11.144	1	306730			33891	8784	27920	27945	37298	37298					0.08624118971044936
LPPLGDILCL	10	Unmodified	_LPPLGDILCL_					0	0	0		ENST00000451271.5_1_3:9958923-9975274:+|nuORF	ENST00000451271.5_1_3:9958923-9975274:+|nuORF	ENST00000451271.5_1_3:9958923-9975274:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	527.3031616210938	2	527.304278	1052.594	1.5269	0.00080513	-2.4679	-0.0013014	-0.94107	-0.00049623	527.3028216322525	116.74	0.76365	116.74	116.42	117.18	0					33	16	3	0	0	0	0.45225	1	13366	13366		60.972	6.1956	1	567530			33892	12045	27921	27946	37299	37299					0.06981028407813028
LPPLHEALL	9	Unmodified	_LPPLHEALL_					0	0	0		ENSG00000185875|ENST00000376356|THNSL1	ENSG00000185875|ENST00000376356|THNSL1	ENSG00000185875|ENST00000376356|THNSL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.60693359375	2	501.80276	1001.59097	1.0511	0.00052745	-3.6934	-0.0018534	-2.6423	-0.0013259	501.80085284404487	109.57	0.22116	109.57	109.41	109.64	0					6	4	2	0	0	0	0.027462	1	12403	12403		40.573	0	1	46359			33893	8294	27922	27947	37300	37300					0.09023521345329755
LPPLSALTT	9	Unmodified	_LPPLSALTT_					0	0	0			REV__ENST00000592509.5_3_19:56826016-56826052:-|nuORF	REV__ENST00000592509.5_3_19:56826016-56826052:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	456.77227783203125	2	456.773668	911.532783	-0.55209	-0.00025218	-2.5379	-0.0011592	-3.09	-0.0014114	456.77237766888294	142.31	1.8774	142.08	141.37	143.25	-0.22697					97	37	4	0	0	0	0.58665	1	14327	14327		33.516	8.0654	1	225920	+		33894	27952	27923	27948	37301	37301					0.07347839700025816
LPPPFPILI	9	Unmodified	_LPPPFPILI_					0	0	0		ENST00000553116.5_1_12:56380664-56380745:+|nuORF	ENST00000553116.5_1_12:56380664-56380745:+|nuORF	ENST00000553116.5_1_12:56380664-56380745:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	503.8199157714844	2	503.820421	1005.62629	0.88137	0.00044405	-2.3822	-0.0012002	-1.5009	-0.00075617	503.8190775441686	139.63	1.9628	139.63	139.22	141.18	0					67	40	3	0	0	0	0.42921	1	16307	16307		49.211	6.8147	1	172390			33895	13620	27924	27949	37302	37302					0.12370183873144924
LPPPLPVSLF	10	Unmodified	_LPPPLPVSLF_					0	0	0		ENST00000259371.6_1_9:124546428-124546671:+|nuORF	ENST00000259371.6_1_9:124546428-124546671:+|nuORF	ENST00000259371.6_1_9:124546428-124546671:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3302001953125	2	540.328611	1078.64267	-1.2676	-0.00068491	4.0333	0.0021793	2.7657	0.0014944	540.3307152267141	139.22	4.0818	138.16	137	141.08	-1.0595					200	82	3	0	0	0	0.7759	1	11451	11451		21.96	2.5999	1	55828			33896	9842	27925	27950	37303	37303					0.10649265039205602
LPPPPPPPPPE	11	Unmodified	_LPPPPPPPPPE_					0	0	0			REV__nc|ENSG00000203485|Q27J81-2|INF2	REV__nc|ENSG00000203485|Q27J81-2|INF2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.8241577148438	2	567.813325	1133.6121	3.6869	0.0020935	-2.9017	-0.0016476	0.78522	0.00044586	567.8114236148272	134.59	0.59471	133.06	132.73	133.33	-1.5282					24	11	3	0	0	0	0.025792	1	13029	13029		29.15	6.1071	1	40348	+		33897	23103	27926	27951	37304	37304					0.050634866541713563
LPPPPPPPPPE	11	Unmodified	_LPPPPPPPPPE_					0	0	0			REV__nc|ENSG00000203485|Q27J81-2|INF2	REV__nc|ENSG00000203485|Q27J81-2|INF2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	567.813325	1133.6121	0.038156	2.1665E-05	0.42581	0.00024178	0.46396	0.00026344	567.8131562735246	133.11	0.59152	132.88	132.52	133.11	-0.22697	-0.12809	0.0011174	NaN	44.117	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28375	+		33898	23103	27926	27951							0.050634866541713563
LPPPPPPPPPE	11	Unmodified	_LPPPPPPPPPE_					0	0	0			REV__nc|ENSG00000203485|Q27J81-2|INF2	REV__nc|ENSG00000203485|Q27J81-2|INF2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	567.813325	1133.6121	-0.69171	-0.00039276	0.74913	0.00042537	0.057418	3.2603E-05	567.813853351612	134.21	0.29608	133.08	132.86	133.16	-1.1226	0.075265	0.0014846	NaN	44.117	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19260	+		33899	23103	27926	27951							0.050634866541713563
LPPPPRSPPRR	11	Unmodified	_LPPPPRSPPRR_					0	0	0			REV__ENST00000561463.1_1_15:102312101-102312521:+|nuORF	REV__ENST00000561463.1_1_15:102312101-102312521:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	423.92236328125	3	423.922801	1268.74657	-1.1128	-0.00047175	-1.7192	-0.00072882	-2.832	-0.0012006	423.9220487542345	43.946	1.8813	40.938	40.693	42.574	-3.0074					92	36	5	0	0	0	0.71582	1	2157	2157		24.232	0.85391	1	561530	+		33900	27635	27927	27952	37305	37305					0.12294984919435592
LPPPPSLQN	9	Unmodified	_LPPPPSLQN_					0	0	0		ENST00000538079.1_1_12:6881724-6881973:+|nuORF	ENST00000538079.1_1_12:6881724-6881973:+|nuORF	ENST00000538079.1_1_12:6881724-6881973:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.7699890136719	2	481.768917	961.523281	-1.0876	-0.00052397	0.94065	0.00045317	-0.14695	-7.0795E-05	481.76924664079263	66.122	2.1092	62.633	62.126	64.235	-3.4898					85	42	4	0	0	0	0.11171	2	4784	4784;4823		94.006	16.459	1	1312700			33901	13419	27928	27953	37306;37307	37306					0.040980714145121055
LPPPQPLSL	9	Unmodified	_LPPPQPLSL_					0	0	0		ENSG00000214929|ENST00000344803|SPATA31D1	ENSG00000214929|ENST00000344803|SPATA31D1	ENSG00000214929|ENST00000344803|SPATA31D1	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.2906494140625	2	481.289485	960.564418	-0.6756	-0.00032516	0.28739	0.00013832	-0.38821	-0.00018684	481.2894430163372	94.885	1.8627	92.416	92.11	93.972	-2.4685					87	36	4	0	0	0	0.13482	2	8314	8314;8351		87.754	3.123	1	864590			33902	9189	27929	27954	37308;37309	37308					0.08255832453994572
LPPPRNKP	8	Unmodified	_LPPPRNKP_					0	0	0			REV__ENST00000378347.2_1_16:89006201-89006603:+|nuORF	REV__ENST00000378347.2_1_16:89006201-89006603:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	460.75921630859375	2	459.779619	917.544686	-0.42502	-0.00019541	0.16461	7.5684E-05	-0.26041	-0.00011973	459.77968240490605	88.748	1.1782	86.617	86.364	87.542	-2.1309					37	23	2	0	0	0	0.028476	1	5432	5432		44.531	26.207	1	33138	+		33903	25138	27930	27955	37310	37310					0.08261501233891977
LPPPRNKP	8	Unmodified	_LPPPRNKP_					0	0	0			REV__ENST00000378347.2_1_16:89006201-89006603:+|nuORF	REV__ENST00000378347.2_1_16:89006201-89006603:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	460.7589111328125	2	459.779619	917.544686	-0.57303	-0.00026347	0.34889	0.00016041	-0.22414	-0.00010306	459.7796716690929	89.19	1.742	86.588	85.781	87.523	-2.6027					51	34	2	0	0	0	0.028476	1	7640	7640		28.254	20.023	1	59171	+		33904	25138	27930	27955	37311	37311					0.08261501233891977
LPPPRNKP	8	Unmodified	_LPPPRNKP_					0	0	0			REV__ENST00000378347.2_1_16:89006201-89006603:+|nuORF	REV__ENST00000378347.2_1_16:89006201-89006603:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	459.779619	917.544686	1.9016	0.0008743	-2.1354	-0.00098184	-0.23388	-0.00010753	459.7785348020473	87.743	0.98227	86.312	86.04	87.022	-1.4311	-0.19369	-0.001538	NaN	42.474	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49414	+		33905	25138	27930	27955							0.08261501233891977
LPPRKGVMP	9	Unmodified	_LPPRKGVMP_					0	0	0		ENST00000525036.1_1_13:48877982-48934322:+|nuORF	ENST00000525036.1_1_13:48877982-48934322:+|nuORF	ENST00000525036.1_1_13:48877982-48934322:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	496.8216247558594	2	497.796955	993.579357	0.16843	8.3846E-05	-0.7266	-0.0003617	-0.55817	-0.00027785	497.796624164553	71.332	0.24783	68.73	68.534	68.782	-2.6023					6	4	2	0	0	0	0.027462	1	3314	3314		26.796	0	1	7020.6			33906	13179	27931	27956	37312	37312					0.0823100105035337
LPPRLGAPSK	10	Unmodified	_LPPRLGAPSK_					0	0	0		ENST00000521811.5_3_17:4854387-4855051:+|nuORF;ENST00000521659.5_2_17:4854417-4855367:+|nuORF	ENST00000521811.5_3_17:4854387-4855051:+|nuORF	ENST00000521811.5_3_17:4854387-4855051:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	518.3174438476562	2	518.319109	1034.62366	0.17843	9.2486E-05	-4.1731	-0.002163	-3.9947	-0.0020705	518.3168968039378	134.8	1.0273	134.58	133.9	134.93	-0.22696					39	20	3	0	0	0	0.67931	1	13355	13355		32.812	2.3088	1	135940			33907	13130	27932	27957	37313	37313					0.10773728468188892
LPPRLQMLL	9	Unmodified	_LPPRLQMLL_					0	0	0			REV__nc|ENSG00000103549|O75150-3|RNF40	REV__nc|ENSG00000103549|O75150-3|RNF40	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.8338623046875	2	540.833537	1079.65252	-0.50387	-0.00027251	0.70092	0.00037908	0.19705	0.00010657	540.833609472627	83.802	2.4503	81.139	80.193	82.643	-2.6629					64	50	2	0	0	0	0.58665	1	7001	7001		33.516	0	1	317810	+		33908	17626	27933	27958	37314	37314					0.1158812977296293
LPPSSFLLRRP	11	Unmodified	_LPPSSFLLRRP_					0	0	0			REV__ENST00000556553.5_1_14:88851807-88857770:+|nuORF	REV__ENST00000556553.5_1_14:88851807-88857770:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8814697265625	2	641.885147	1281.75574	-4.0037	-0.0025699	-0.45506	-0.00029209	-4.4587	-0.002862	642.3862707583961	149.94	3.9275	149.71	147.52	151.45	-0.22696					225	78	5	0	0	0	0.72511	1	15161	15161		14.137	0.68308	1	222110	+		33909	27563	27934	27959	37315	37315					0.12613333485114708
LPPTFEDT	8	Unmodified	_LPPTFEDT_					0	0	0		BRF2|p.L167Cfs*7|1|0.05|ENSG00000104221|chr8:37846892-37846892|A/-|frameshift_variant;nc|ENSG00000104221|Q9HAW0-2|BRF2;ENSG00000104221|ENST00000220659|BRF2	BRF2|p.L167Cfs*7|1|0.05|ENSG00000104221|chr8:37846892-37846892|A/-|frameshift_variant	BRF2|p.L167Cfs*7|1|0.05|ENSG00000104221|chr8:37846892-37846892|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	459.2566833496094	2	460.224008	918.433463	-0.86724	-0.00039912	-3.1346	-0.0014426	-4.0018	-0.0018417	460.22259432799063	55.8	0.50856	52.505	52.361	52.87	-3.2944					13	9	2	0	0	0	0.028476	1	3521	3521		19.36	0	1	14012			33910	160	27935	27960	37316	37316					-0.029016029847070968
LPPTLETPQ	9	Unmodified	_LPPTLETPQ_					0	0	0		nc|ENSG00000134444|Q9P260|RELCH;ENSG00000134444|ENST00000644646|RELCH;nc|ENSG00000134444|Q9P260-2|RELCH	nc|ENSG00000134444|Q9P260|RELCH	nc|ENSG00000134444|Q9P260|RELCH	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.903076171875	2	498.274032	994.533512	-0.94239	-0.00046957	3.4492	0.0017187	2.5069	0.0012491	498.27575909862156	70.895	0.67017	67.439	67.155	67.825	-3.4563					23	13	2	0	0	0	0.027455	1	5393	5393		34.173	0	1	16508			33911	4299	27936	27961	37317	37317					0.036026343490902946
LPPVIITRTGT	11	Unmodified	_LPPVIITRTGT_					0	0	0			REV__nc|ENSG00000163349|Q86Z02-2|HIPK1	REV__nc|ENSG00000163349|Q86Z02-2|HIPK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3564453125	2	584.358431	1166.70231	-0.5033	-0.0002941	-2.654	-0.0015509	-3.1573	-0.001845	584.3567763295431	142.42	4.015	140.98	138.81	142.83	-1.4427					242	77	4	0	0	0	0.72485	1	13872	13872		17.468	0	1	214670	+		33912	20829	27937	27962	37318	37318					0.1256253598260173
LPPVSYSF	8	Unmodified	_LPPVSYSF_					0	0	0		ENST00000473753.2_1_12:28343133-28343244:-|nuORF	ENST00000473753.2_1_12:28343133-28343244:-|nuORF	ENST00000473753.2_1_12:28343133-28343244:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	455.7568664550781	2	455.239461	908.46437	-0.15907	-7.2413E-05	-3.0916	-0.0014074	-3.2507	-0.0014799	455.23737922950835	51.322	1.5625	48.149	47.872	49.435	-3.1734					51	30	3	0	0	0	0.028476	1	3022	3022		38.806	1.647	1	315770			33913	12420	27938	27963	37319	37319					0.0064759512019918475
LPPWSLEL	8	Unmodified	_LPPWSLEL_					0	0	0		ENST00000461890.1_1_20:43991814-43994327:+|nuORF	ENST00000461890.1_1_20:43991814-43994327:+|nuORF	ENST00000461890.1_1_20:43991814-43994327:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.76702880859375	2	477.768386	953.522219	-1.0584	-0.00050565	-3.4799	-0.0016626	-4.5382	-0.0021682	477.766541573941	88.764	1.542	86.161	85.629	87.171	-2.6027					74	30	4	0	0	0	0.72922	1	7606	7606		37.028	1.8278	1	600180			33914	12191	27939	27964	37320	37320					0.04359857045608351
LPPYPRPKL	9	Unmodified	_LPPYPRPKL_					0	0	0		ENST00000496367.1_1_22:31266465-31268361:+|nuORF	ENST00000496367.1_1_22:31266465-31268361:+|nuORF	ENST00000496367.1_1_22:31266465-31268361:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.8320922851562	2	540.831852	1079.64915	-2.0025	-0.001083	1.179	0.00063766	-0.82347	-0.00044536	540.8325567076699	124.8	3.4681	123.41	123.02	126.49	-1.3908					189	68	4	0	0	0	0.57242	1	11905	11905		35.201	6.0512	1	9581200			33915	12786	27940	27965	37321	37321					0.11251202990615639
LPQALPQAR	9	Unmodified	_LPQALPQAR_					0	0	0		nc|ENSG00000205923|Q6PRD7|CEMP1	nc|ENSG00000205923|Q6PRD7|CEMP1	nc|ENSG00000205923|Q6PRD7|CEMP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	497.7864990234375	2	497.295633	992.576714	-0.82609	-0.00041081	0.52416	0.00026066	-0.30193	-0.00015015	497.29564716210115	67.517	1.8286	64.856	64.248	66.077	-2.661					71	36	3	0	0	0	0.027462	1	5209	5209		23.042	0	1	329320			33916	15280	27941	27966	37322	37322					0.0801286891704649
LPQARGPLV	9	Unmodified	_LPQARGPLV_					0	0	0			REV__ENST00000303212.2_1_19:5824142-5828303:+|nuORF	REV__ENST00000303212.2_1_19:5824142-5828303:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	475.7933044433594	2	475.792727	949.5709	0.67344	0.00032042	-1.0533	-0.00050117	-0.37989	-0.00018075	475.7921346062056	80.784	1.9819	78.462	78.081	80.062	-2.3226					116	38	6	0	0	0	0.36502	1	4477	4477		55.504	0.73953	1	2495500	+		33917	24269	27942	27967	37323	37323					0.09409770405386553
LPQAVIAKNTL	11	Unmodified	_LPQAVIAKNTL_					0	0	0		tr|A0A7D6VRZ6|A0A7D6VRZ6_9CLOTDNAhelicaseRecQOS=ClostridiumintestinaleOX=36845GN=recQPE=3SV=1	tr|A0A7D6VRZ6|A0A7D6VRZ6_9CLOTDNAhelicaseRecQOS=ClostridiumintestinaleOX=36845GN=recQPE=3SV=1	tr|A0A7D6VRZ6|A0A7D6VRZ6_9CLOTDNAhelicaseRecQOS=ClostridiumintestinaleOX=36845GN=recQPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.6633911132812	2	584.358431	1166.70231	2.0971	0.0012254	0.34685	0.00020269	2.4439	0.0014281	584.3587358389505	106.47	0.35406	106.47	106.27	106.63	0					11	7	2	0	0	0	0.025656	1	11986	11986		40.058	13.365	1	147500			33918	34969	27943	27968	37324	37324					0.1256253598260173
LPQGIVREL	9	Unmodified	_LPQGIVREL_					0	0	0		ENSG00000213246|ENST00000225504|SUPT4H1	ENSG00000213246|ENST00000225504|SUPT4H1	ENSG00000213246|ENST00000225504|SUPT4H1	MULTI-MSMS	OvCa9_classI_Rep2	2	512.8096313476562	2	512.811116	1023.60768	-0.15487	-7.9419E-05	-0.46745	-0.00023971	-0.62232	-0.00031913	512.8108542790907	93.719	2.3712	92.619	92.123	94.494	-1.0995					128	46	6	0	0	0	0.051592	6	8401	8363;8368;8373;8394;8401;8407		117.81	19.012	1	1668800			33919	9123	27944	27969	37325;37326;37327;37328;37329;37330	37329					0.09682022231265819
LPQGIVREL	9	Unmodified	_LPQGIVREL_					0	0	0		ENSG00000213246|ENST00000225504|SUPT4H1	ENSG00000213246|ENST00000225504|SUPT4H1	ENSG00000213246|ENST00000225504|SUPT4H1	MULTI-MSMS	OvCa9_classI_Rep3	3	512.8115234375	2	512.811116	1023.60768	-0.38427	-0.00019706	-0.1168	-5.9898E-05	-0.50107	-0.00025696	512.81100900004	94.582	2.7124	92.687	92.204	94.917	-1.8956					135	53	4	0	0	0	0.046778	6	6109	6109;6113;6119;6124;6132;6138		120.87	22.239	1	2266000			33920	9123	27944	27969	37331;37332;37333;37334;37335;37336	37331					0.09682022231265819
LPQGIVREL	9	Unmodified	_LPQGIVREL_					0	0	0		ENSG00000213246|ENST00000225504|SUPT4H1	ENSG00000213246|ENST00000225504|SUPT4H1	ENSG00000213246|ENST00000225504|SUPT4H1	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.8118896484375	2	512.811116	1023.60768	-1.0634	-0.0005453	0.49931	0.00025605	-0.56405	-0.00028925	512.8113154033805	95.151	2.3582	92.683	92.26	94.618	-2.4685					122	46	4	0	0	0	0.033166	3	8379	8355;8367;8379		132.76	29.985	1	2042500			33921	9123	27944	27969	37337;37338;37339	37339					0.09682022231265819
LPQGPGCAL	9	Unmodified	_LPQGPGCAL_					0	0	0			REV__ENST00000396465.5_1_8:74206146-74206593:-|nuORF	REV__ENST00000396465.5_1_8:74206146-74206593:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	428.2229309082031	2	428.223288	854.432024	2.1294	0.00091187	-2.0334	-0.00087077	0.095985	4.1103E-05	428.2222618775492	62.473	1.7234	59.439	58.937	60.66	-3.0339					58	35	3	0	0	0	0.52083	1	2274	2274		40.573	1.5511	1	42700	+		33922	25333	27945	27970	37340	37340					-0.00101515554456455
LPQIAADLMI	10	Oxidation (M)	_LPQIAADLM(Oxidation (M))I_		LPQIAADLM(1)I		LPQIAADLM(72)I	0	0	1		nc|ENSG00000254838|Q7Z2Y8|GVINP1;ENST00000526769.3_1_11:6735844-6741409:-|nuORF	nc|ENSG00000254838|Q7Z2Y8|GVINP1	nc|ENSG00000254838|Q7Z2Y8|GVINP1	MULTI-MSMS	OvCa99_classI_Rep5	1	550.8050537109375	2	550.804642	1099.59473	0.45471	0.00025046	-1.2797	-0.00070489	-0.82504	-0.00045443	550.8038250936805	141.39	0.55557	141.39	141.03	141.59	0					33	10	4	0	0	0	0.37436	1	16509	16509		71.877	8.899	1	487000			33923	15353	27946	27971	37341	37341		377			0.04891823056868816
LPQIPLLQGQ	10	Unmodified	_LPQIPLLQGQ_					0	0	0		nc|ENSG00000187848|Q9UBL9-7|P2RX2	nc|ENSG00000187848|Q9UBL9-7|P2RX2	nc|ENSG00000187848|Q9UBL9-7|P2RX2	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8287353515625	2	553.832049	1105.64954	0.13277	7.3535E-05	-3.4573	-0.0019148	-3.3245	-0.0018412	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.71192	1	14286	14286		29.15	7.1897	1	400120			33924	15226	27947	27972	37342	37342					0.10094577919812764
LPQKTLLGQ	9	Unmodified	_LPQKTLLGQ_					0	0	0		TMC8|p.F281Sfs*127|1|0.3|ENSG00000167895|chr17:78134418-78134419|-/C|frameshift_variant;nc|ENSG00000167895|Q8IU68-2|TMC8;ENSG00000167895|ENST00000318430|TMC8	TMC8|p.F281Sfs*127|1|0.3|ENSG00000167895|chr17:78134418-78134419|-/C|frameshift_variant	TMC8|p.F281Sfs*127|1|0.3|ENSG00000167895|chr17:78134418-78134419|-/C|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.3140869140625	2	499.305667	996.596781	0.025759	1.2861E-05	0.30612	0.00015285	0.33188	0.00016571	499.30569993032685	112.88	0.24693	111.43	111.31	111.56	-1.4461					8	4	2	0	0	0	0.027462	1	10451	10451		23.042	0	1	18142			33925	6847	27948	27973	37343	37343					0.0983461985700842
LPQKTLLGQ	9	Unmodified	_LPQKTLLGQ_					0	0	0		TMC8|p.F281Sfs*127|1|0.3|ENSG00000167895|chr17:78134418-78134419|-/C|frameshift_variant;nc|ENSG00000167895|Q8IU68-2|TMC8;ENSG00000167895|ENST00000318430|TMC8	TMC8|p.F281Sfs*127|1|0.3|ENSG00000167895|chr17:78134418-78134419|-/C|frameshift_variant	TMC8|p.F281Sfs*127|1|0.3|ENSG00000167895|chr17:78134418-78134419|-/C|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	499.305667	996.596781	0.12134	6.0585E-05	-0.60249	-0.00030083	-0.48115	-0.00024024	499.30503850258015	111.67	0.34422	111.53	111.32	111.67	-0.13961	0.046236	-0.00053331	NaN	16.473	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11734			33926	6847	27948	27973							0.0983461985700842
LPQLCDSPDL	10	Carbamidomethyl (C)	_LPQLC(Carbamidomethyl (C))DSPDL_	LPQLC(1)DSPDL		LPQLC(66)DSPDL		0	1	0			REV__SF3B3|p.K976Dfs*14|1|0.12|ENSG00000189091|chr16:70567509-70567510|-/GACTATTTTACCATAATTTTTA|frameshift_variant	REV__SF3B3|p.K976Dfs*14|1|0.12|ENSG00000189091|chr16:70567509-70567510|-/GACTATTTTACCATAATTTTTA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.2796020507812	2	579.278989	1156.54342	-2.6164	-0.0015156	0.75545	0.00043762	-1.8609	-0.001078	579.2792505088416	87.772	1.2109	85.145	84.85	86.061	-2.6269					61	23	4	0	0	0	0.41408	1	7479	7479		66.429	16.988	1	296860	+		33927	22760	27949	27974	37344	37344	266				-0.028585457078634136
LPQLCDSPDL	10	Carbamidomethyl (C)	_LPQLC(Carbamidomethyl (C))DSPDL_					0	1	0			REV__SF3B3|p.K976Dfs*14|1|0.12|ENSG00000189091|chr16:70567509-70567510|-/GACTATTTTACCATAATTTTTA|frameshift_variant	REV__SF3B3|p.K976Dfs*14|1|0.12|ENSG00000189091|chr16:70567509-70567510|-/GACTATTTTACCATAATTTTTA|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	579.278989	1156.54342	-0.54625	-0.00031643	0.072761	4.2149E-05	-0.47349	-0.00027428	579.2789111868834	86.529	2.1796	85.038	83.85	86.03	-1.4906	-0.08801	-0.00072766	NaN	66.429	81	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133050	+		33928	22760	27949	27974			266				-0.028585457078634136
LPQLCDSPDL	10	Carbamidomethyl (C)	_LPQLC(Carbamidomethyl (C))DSPDL_					0	1	0			REV__SF3B3|p.K976Dfs*14|1|0.12|ENSG00000189091|chr16:70567509-70567510|-/GACTATTTTACCATAATTTTTA|frameshift_variant	REV__SF3B3|p.K976Dfs*14|1|0.12|ENSG00000189091|chr16:70567509-70567510|-/GACTATTTTACCATAATTTTTA|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	579.278989	1156.54342	-1.7535	-0.0010158	2.1312	0.0012346	0.37768	0.00021878	579.279864797027	87.372	1.1824	85.195	84.884	86.066	-2.1768	0.069283	0.0016572	NaN	66.429	77	22	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	346270	+		33929	22760	27949	27974			266				-0.028585457078634136
LPQLCDSPDL	10	Carbamidomethyl (C)	_LPQLC(Carbamidomethyl (C))DSPDL_					0	1	0			REV__SF3B3|p.K976Dfs*14|1|0.12|ENSG00000189091|chr16:70567509-70567510|-/GACTATTTTACCATAATTTTTA|frameshift_variant	REV__SF3B3|p.K976Dfs*14|1|0.12|ENSG00000189091|chr16:70567509-70567510|-/GACTATTTTACCATAATTTTTA|frameshift_variant	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	579.278989	1156.54342	-2.6164	-0.0015156	0.75545	0.00043762	-1.8609	-0.001078	579.2792505088416	87.772	1.2109	85.145	84.85	86.061	-2.6269	0.018727	6.3278E-05	NaN	66.429	61	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	296860	+		33930	22760	27949	27974			266				-0.028585457078634136
LPQLFIPAN	9	Unmodified	_LPQLFIPAN_					0	0	0			REV__ENSG00000280165|ENST00000409204|PCDH20	REV__ENSG00000280165|ENST00000409204|PCDH20	MULTI-MSMS	OvCa9_classI_Rep2	2	506.7922668457031	2	506.794935	1011.57532	-1.4847	-0.00075246	-3.038	-0.0015397	-4.5228	-0.0022921	506.7934294899102	52.807	1.2341	49.993	49.591	50.826	-2.8139					59	24	4	0	0	0	0.58665	1	3539	3539		33.516	1.5607	1	256810	+		33931	23658	27950	27975	37345	37345					0.06999234828265344
LPQLFTFPA	9	Unmodified	_LPQLFTFPA_					0	0	0			REV__ENSG00000128272|ENST00000674920|ATF4	REV__ENSG00000128272|ENST00000674920|ATF4	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.2608642578125	2	517.289485	1032.56442	-0.78732	-0.00040727	-2.4077	-0.0012455	-3.195	-0.0016528	517.288032421635	55.594	0.84344	52.79	52.332	53.175	-2.804					22	16	2	0	0	0	0.027462	1	3919	3919		38.806	3.6054	1	31972	+		33932	18849	27951	27976	37346	37346					0.04943832454000585
LPQLLRAY	8	Unmodified	_LPQLLRAY_					0	0	0		ENST00000566735.1_1_16:19125342-19127388:+|nuORF;ENSG00000205730|ENST00000381440|ITPRIPL2	ENST00000566735.1_1_16:19125342-19127388:+|nuORF	ENST00000566735.1_1_16:19125342-19127388:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	487.2922668457031	2	487.295102	972.575651	-1.5875	-0.0007736	-2.7606	-0.0013452	-4.3482	-0.0021188	487.2937066188987	143.42	1.0862	143.19	142.8	143.89	-0.22696					37	21	2	0	0	0	0.74394	1	14406	14406		13.775	0.81615	1	43295			33933	9084	27952	27977	37347	37347					0.0882665454812468
LPQLTRTAL	9	Unmodified	_LPQLTRTAL_					0	0	0			REV__PHLDB1|p.P441Lfs*20|1|0.05|ENSG00000019144|chr11:118628144-118628144|C/-|frameshift_variant	REV__PHLDB1|p.P441Lfs*20|1|0.05|ENSG00000019144|chr11:118628144-118628144|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	506.8120422363281	2	506.811116	1011.60768	-0.96963	-0.00049142	-0.36531	-0.00018514	-1.3349	-0.00067656	506.8110395873254	89.248	2.4224	87.118	86.702	89.124	-2.1309					173	47	5	0	0	0	0.19758	1	5465	5465		76.774	2.5191	1	9108500	+		33934	29291	27953	27978	37348	37348					0.10234022231270501
LPQPGLQMPG	10	Unmodified	_LPQPGLQMPG_					0	0	0		nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.3138427734375	2	519.276052	1036.53755	-0.9375	-0.00048682	1.3496	0.00070083	0.41212	0.000214	519.7770869804493	52.557	0.19706	49.744	49.592	49.789	-2.8129					5	3	2	0	0	0	0.026822	1	3499	3499		30.504	0	1	6921.3			33935	5408	27954	27979	37349	37349					0.020744005711549107
LPQPLRSLL	9	Unmodified	_LPQPLRSLL_					0	0	0			REV__ENST00000308385.6_1_12:89745919-89746033:-|nuORF	REV__ENST00000308385.6_1_12:89745919-89746033:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	518.8291015625	2	518.829309	1035.64407	-0.53777	-0.00027901	0.10892	5.6512E-05	-0.42884	-0.0002225	518.8292895658562	121.25	2.223	121.05	120.51	122.73	-0.19719					126	44	4	0	0	0	0.24951	1	11697	11697		68.787	4.5796	1	627930	+		33936	24316	27955	27980	37350	37350					0.12766899127996112
LPQPLRSLL	9	Unmodified	_LPQPLRSLL_					0	0	0			REV__ENST00000308385.6_1_12:89745919-89746033:-|nuORF	REV__ENST00000308385.6_1_12:89745919-89746033:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.828857421875	2	518.829309	1035.64407	0.0085595	4.4409E-06	-0.59769	-0.0003101	-0.58913	-0.00030566	518.8289766262699	122.91	2.4522	121.55	121.01	123.46	-1.3666					110	48	3	0	0	0	0.16562	1	11610	11610		82.241	4.9229	1	898440	+		33937	24316	27955	27980	37351	37351					0.12766899127996112
LPQPQWLL	8	Unmodified	_LPQPQWLL_					0	0	0			REV__nc|ENSG00000114841|Q9P2D7-3|DNAH1	REV__nc|ENSG00000114841|Q9P2D7-3|DNAH1	MULTI-SECPEP	OvCa9_classI_Rep2	2	496.82086181640625	2	497.789653	993.564752	-0.97505	-0.00048537	-3.3243	-0.0016548	-4.2993	-0.0021402	497.787971871764	68.689	3.3564	66.068	65.229	68.586	-2.6203					151	66	4	0	0	0	0.028476	1	5712	5712		21.702	5.2292	1	503540	+		33938	26787	27956	27981	37352	37352					0.06771252173848552
LPQPTPTQLI	10	Unmodified	_LPQPTPTQLI_					0	0	0			REV__ENST00000476994.1_1_17:17723326-17726886:-|nuORF	REV__ENST00000476994.1_1_17:17723326-17726886:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.8109741210938	2	554.324057	1106.63356	2.8045	0.0015546	-0.46333	-0.00025684	2.3412	0.0012978	554.3235816453602	96.318	0.71208	96.318	95.913	96.625	0					26	16	2	0	0	0	0.027118	1	10576	10576		13.454	0	1	972090	+		33939	16915	27957	27982	37353	37353					0.08450871682907746
LPQQQSPPT	9	Unmodified	_LPQQQSPPT_					0	0	0			REV__ENST00000462400.1_1_16:24816349-24826700:+|nuORF	REV__ENST00000462400.1_1_16:24816349-24826700:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.903076171875	2	498.261456	994.50836	-0.98634	-0.00049146	0.86459	0.00043079	-0.12175	-6.0662E-05	498.2618003840866	71.08	0.87631	67.624	67.393	68.27	-3.4563					33	17	3	0	0	0	0.027441	1	5393	5393		37.159	0	1	170750	+		33940	17237	27958	27983	37354	37354					0.010885795465128467
LPQRPRWWL	9	Unmodified	_LPQRPRWWL_					0	0	0			REV__AHDC1|p.M539Sfs*46|1|0.61|ENSG00000126705|chr1:27550500-27550500|A/-|frameshift_variant	REV__AHDC1|p.M539Sfs*46|1|0.61|ENSG00000126705|chr1:27550500-27550500|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	417.9103698730469	3	417.908492	1250.70365	0.64477	0.00026946	4.0857	0.0017074	4.7305	0.0019769	417.9101922569634	35.248	1.798	32.399	32.139	33.937	-2.849					112	35	5	0	0	0	0.48324	5	1111	1101;1111;1149;1161;1174		44.117	11.983	1	905560	+		33941	15580	27959	27984	37355;37356;37357;37358;37359	37356					0.08832214862013643
LPQSHKALL	9	Unmodified	_LPQSHKALL_					0	0	0			REV__ENST00000581967.1_1_17:8136173-8137964:-|nuORF	REV__ENST00000581967.1_1_17:8136173-8137964:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.8070373535156	2	503.805834	1005.59712	-0.90174	-0.0004543	0.81056	0.00040836	-0.091177	-4.5935E-05	503.8060718074197	103.64	1.2567	101.52	101.22	102.48	-2.1192					44	23	3	0	0	0	0.11171	1	9366	9366		94.006	3.2298	1	240380	+		33942	16249	27960	27985	37360	37360					0.09454039576849027
LPQSHKALL	9	Unmodified	_LPQSHKALL_					0	0	0			REV__ENST00000581967.1_1_17:8136173-8137964:-|nuORF	REV__ENST00000581967.1_1_17:8136173-8137964:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	503.805834	1005.59712	-1.5942	-0.00080317	1.4203	0.00071558	-0.17387	-8.7594E-05	503.8063781975422	102.02	1.1381	101.26	101.01	102.15	-0.76401	-0.15498	0.00043929	NaN	94.006	51	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196660	+		33943	16249	27960	27985							0.09454039576849027
LPQSHKALL	9	Unmodified	_LPQSHKALL_					0	0	0			REV__ENST00000581967.1_1_17:8136173-8137964:-|nuORF	REV__ENST00000581967.1_1_17:8136173-8137964:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	503.805834	1005.59712	-0.60485	-0.00030473	-0.035418	-1.7844E-05	-0.64027	-0.00032257	503.80583298973625	102.97	1.2591	101.45	101.15	102.41	-1.5211	0.042425	-0.0010276	NaN	94.006	66	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240170	+		33944	16249	27960	27985							0.09454039576849027
LPQSHKALL	9	Unmodified	_LPQSHKALL_					0	0	0			REV__ENST00000581967.1_1_17:8136173-8137964:-|nuORF	REV__ENST00000581967.1_1_17:8136173-8137964:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	503.805834	1005.59712	-0.90174	-0.0004543	0.81056	0.00040836	-0.091177	-4.5935E-05	503.8060718074197	103.64	1.2567	101.52	101.22	102.48	-2.1192	0.11256	-0.00017513	NaN	94.006	44	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240380	+		33945	16249	27960	27985							0.09454039576849027
LPQSLPRLI	9	Unmodified	_LPQSLPRLI_					0	0	0			REV__ENST00000446213.2_1_2:131593198-131593495:-|nuORF	REV__ENST00000446213.2_1_2:131593198-131593495:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.82861328125	2	518.829309	1035.64407	0.0085595	4.4409E-06	-0.59769	-0.0003101	-0.58913	-0.00030566	518.8289766262699	122.91	2.4522	121.55	121.01	123.46	-1.3666					110	48	3	0	0	0	0.28934	1	11598	11598		64.207	9.431	1	898440	+		33946	25900	27961	27986	37361	37361					0.12766899127996112
LPQTKNTINI	10	Unmodified	_LPQTKNTINI_					0	0	0		ENST00000592937.1_1_19:2477595-2477661:+|nuORF	ENST00000592937.1_1_19:2477595-2477661:+|nuORF	ENST00000592937.1_1_19:2477595-2477661:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	571.2683715820312	2	571.332413	1140.65027	-0.8834	-0.00050471	0.41208	0.00023543	-0.47132	-0.00026928	571.3324881676866	124.37	0.81931	122.98	122.62	123.44	-1.3908					25	15	2	0	0	0	0.027001	1	11781	11781		35.152	14.315	1	30180			33947	14145	27962	27987	37362	37362					0.08557372568884603
LPQTRYVEL	9	Unmodified	_LPQTRYVEL_					0	0	0		nc|ENSG00000168615|Q13443-2|ADAM9;ENSG00000168615|ENST00000487273|ADAM9	nc|ENSG00000168615|Q13443-2|ADAM9	nc|ENSG00000168615|Q13443-2|ADAM9	MSMS	OvCa9_classI_Rep2	2	559.8114624023438	2	559.813856	1117.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.99	1	133.77	133.27	134.27	-0.22696								0	0	0	0.17131	1	13260	13260		47.657	5.1829	1				33948	6925	27963	27988	37363	37363					0.05905701023084475
LPQWADHGQR	10	Unmodified	_LPQWADHGQR_					0	0	0		ENST00000290317.9_1_20:45242167-45298745:-|nuORF	ENST00000290317.9_1_20:45242167-45298745:-|nuORF	ENST00000290317.9_1_20:45242167-45298745:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	402.2593688964844	3	403.203744	1206.5894	2.417	0.00097454	-3.1699	-0.0012781	-0.75291	-0.00030358	403.53709557240205	63.805	0.24388	60.811	60.743	60.987	-2.9933					5	4	2	0	0	0	0.027117	1	2423	2423		35.152	33.92	1	4154.6			33949	10088	27964	27989	37364	37364					-0.005627196907425969
LPRAARAEA	9	Unmodified	_LPRAARAEA_					0	0	0			REV__ENST00000592120.5_2_16:4897963-4898116:+|nuORF	REV__ENST00000592120.5_2_16:4897963-4898116:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	477.7779846191406	2	477.777608	953.540663	0.30924	0.00014775	-0.9987	-0.00047716	-0.68946	-0.00032941	477.7771636832581	43.542	2.3879	40.832	40.509	42.897	-2.7097					104	47	3	0	0	0	0.48324	1	2439	2439		44.117	1.7207	1	3363800	+		33950	27945	27965	27990	37365	37365					0.0620341174017085
LPRADQVAL	9	Unmodified	_LPRADQVAL_					0	0	0			REV__tr|A0A553SJU6|A0A553SJU6_NIACIBacillithiolsystemredox-activeproteinYtxJOS=NialliacirculansOX=1397GN=ytxJPE=4SV=1	REV__tr|A0A553SJU6|A0A553SJU6_NIACIBacillithiolsystemredox-activeproteinYtxJOS=NialliacirculansOX=1397GN=ytxJPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	491.7876281738281	2	491.787641	981.56073	-0.45797	-0.00022522	-0.31578	-0.0001553	-0.77375	-0.00038052	491.78761153947676	73.69	1.436	71.203	70.432	71.868	-2.4873					89	28	5	0	0	0	0.18193	2	3602	3602;3613		79.451	0	1	713280	+		33951	30046	27966	27991	37366;37367	37366					0.06921162680123416
LPRAGGAFL	9	Unmodified	_LPRAGGAFL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	OvCa9_classI_Rep2	2	451.2677307128906	2	451.266345	900.518136	3.9229	0.0017703	-4.1939	-0.0018925	-0.271	-0.00012229	451.2643761804868	87.919	1.8703	86.488	85.642	87.513	-1.4311					79	37	4	0	0	0	0.27546	1	7687	7687		65.803	5.5092	1	331550			33952	8656	27967	27992	37368	37368					0.06389812342570167
LPRAGGAFL	9	Unmodified	_LPRAGGAFL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	OvCa9_classI_Rep4_	4	451.2669982910156	2	451.266345	900.518136	0.55963	0.00025254	-0.96547	-0.00043568	-0.40583	-0.00018314	451.2657863867747	89.158	1.2365	86.555	86.286	87.523	-2.6027					47	24	2	0	0	0	0.29717	1	7630	7630		63.306	0	1	573870			33953	8656	27967	27992	37369	37369					0.06389812342570167
LPRAGGAFL	9	Unmodified	_LPRAGGAFL_					0	0	0		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	451.266345	900.518136	-0.25133	-0.00011342	-0.079016	-3.5657E-05	-0.33035	-0.00014908	451.26616946408643	88.666	1.1235	86.535	86.265	87.388	-2.1309	0.0086608	0.0016179	NaN	65.803	67	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	605850			33954	8656	27967	27992							0.06389812342570167
LPRAVGTQTL	10	Unmodified	_LPRAVGTQTL_					0	0	0		SNX1|p.D398Afs*8|1|0.33|ENSG00000028528|chr15:64131864-64131864|A/-|frameshift_variant;nc|ENSG00000028528|Q13596-2|SNX1;ENSG00000028528|ENST00000559844|SNX1;nc|ENSG00000028528|Q13596-3|SNX1;ENST00000560260.5_1_15:64422114-64427054:+|nuORF	SNX1|p.D398Afs*8|1|0.33|ENSG00000028528|chr15:64131864-64131864|A/-|frameshift_variant	SNX1|p.D398Afs*8|1|0.33|ENSG00000028528|chr15:64131864-64131864|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	528.3125	2	528.314023	1054.61349	-0.96792	-0.00051137	0.098687	5.2138E-05	-0.86924	-0.00045923	528.3140932652811	74.308	2.3394	72.337	71.64	73.979	-1.9711					122	44	5	0	0	0	0.20536	6	6067	6067;6070;6076;6082;6088;6096		93.598	24.811	1	992360			33955	1060	27968	27993	37370;37371;37372;37373;37374;37375	37370					0.08837120742964544
LPRAVGTQTL	10	Unmodified	_LPRAVGTQTL_					0	0	0		SNX1|p.D398Afs*8|1|0.33|ENSG00000028528|chr15:64131864-64131864|A/-|frameshift_variant;nc|ENSG00000028528|Q13596-2|SNX1;ENSG00000028528|ENST00000559844|SNX1;nc|ENSG00000028528|Q13596-3|SNX1;ENST00000560260.5_1_15:64422114-64427054:+|nuORF	SNX1|p.D398Afs*8|1|0.33|ENSG00000028528|chr15:64131864-64131864|A/-|frameshift_variant	SNX1|p.D398Afs*8|1|0.33|ENSG00000028528|chr15:64131864-64131864|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	528.3143310546875	2	528.314023	1054.61349	-0.67643	-0.00035737	-0.074311	-3.926E-05	-0.75074	-0.00039663	528.3140144640237	74.33	2.708	71.92	71.548	74.256	-2.4106					138	53	5	0	0	0	0.028355	13	3702	3668;3671;3677;3683;3689;3695;3702;3708;3721;3727;3733;3741;3747		138.06	30.027	1	2943500			33956	1060	27968	27993	37376;37377;37378;37379;37380;37381;37382;37383;37384;37385;37386;37387;37388	37382					0.08837120742964544
LPRAVGTQTL	10	Unmodified	_LPRAVGTQTL_					0	0	0		SNX1|p.D398Afs*8|1|0.33|ENSG00000028528|chr15:64131864-64131864|A/-|frameshift_variant;nc|ENSG00000028528|Q13596-2|SNX1;ENSG00000028528|ENST00000559844|SNX1;nc|ENSG00000028528|Q13596-3|SNX1;ENST00000560260.5_1_15:64422114-64427054:+|nuORF	SNX1|p.D398Afs*8|1|0.33|ENSG00000028528|chr15:64131864-64131864|A/-|frameshift_variant	SNX1|p.D398Afs*8|1|0.33|ENSG00000028528|chr15:64131864-64131864|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.3147583007812	2	528.314023	1054.61349	-0.64541	-0.00034098	-0.69111	-0.00036512	-1.3365	-0.0007061	528.3137080603358	75.323	2.2513	72.092	71.726	73.977	-3.2308					130	46	5	0	0	0	0.030279	6	5923	5913;5923;5935;5947;5959;5975		136.27	24.327	1	2892100			33957	1060	27968	27993	37389;37390;37391;37392;37393;37394	37390					0.08837120742964544
LPRAVLVDL	9	Unmodified	_LPRAVLVDL_					0	0	0		ENST00000445286.3_1_12:38595738-38596634:+|nuORF	ENST00000445286.3_1_12:38595738-38596634:+|nuORF	ENST00000445286.3_1_12:38595738-38596634:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3157958984375	2	498.316035	994.617516	-0.044391	-2.2121E-05	-0.21861	-0.00010894	-0.263	-0.00013106	498.3157300992715	110.05	1.7303	109.88	109.41	111.14	-0.17236					105	34	7	0	0	0	0.24951	3	10341	10341;10353;10398		68.787	7.6473	1	1087000			33958	11974	27969	27994	37395;37396;37397	37395					0.11999210236660929
LPRAVLVDL	9	Unmodified	_LPRAVLVDL_					0	0	0		ENST00000445286.3_1_12:38595738-38596634:+|nuORF	ENST00000445286.3_1_12:38595738-38596634:+|nuORF	ENST00000445286.3_1_12:38595738-38596634:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	498.31646728515625	2	498.316035	994.617516	0.7807	0.00038904	-1.1222	-0.00055921	-0.3415	-0.00017018	498.31525557924255	111.08	1.6999	109.97	109.44	111.14	-1.1038					98	33	7	0	0	0	0.24951	4	8033	8033;8068;8075;8082		68.787	7.8021	1	1109600			33959	11974	27969	27994	37398;37399;37400;37401	37398					0.11999210236660929
LPRAVLVDL	9	Unmodified	_LPRAVLVDL_					0	0	0		ENST00000445286.3_1_12:38595738-38596634:+|nuORF	ENST00000445286.3_1_12:38595738-38596634:+|nuORF	ENST00000445286.3_1_12:38595738-38596634:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3154296875	2	498.316035	994.617516	0.23096	0.00011509	-0.60423	-0.0003011	-0.37328	-0.00018601	498.315540241021	111.53	1.5703	110.02	109.53	111.1	-1.5111					86	29	7	0	0	0	0.27001	1	10318	10318		66.429	10.925	1	1295000			33960	11974	27969	27994	37402	37402					0.11999210236660929
LPRAVNTQAL	10	Unmodified	_LPRAVNTQAL_					0	0	0		nc|ENSG00000205302|O60749-2|SNX2;SNX2|p.N438Kfs*15|1|0.12|ENSG00000205302|chr5:122826148-122826185|TAACAAACCAGATAAAATACAGCAAGCTAAAAATGAAA/-|frameshift_variant;ENSG00000205302|ENST00000379516|SNX2	nc|ENSG00000205302|O60749-2|SNX2	nc|ENSG00000205302|O60749-2|SNX2	MULTI-MSMS	OvCa9_classI_Rep3	3	541.8203125	2	541.819473	1081.62439	-0.2025	-0.00010972	-0.86937	-0.00047104	-1.0719	-0.00058076	541.8190481905314	75.406	2.4622	72.995	72.631	75.093	-2.4106					113	47	5	0	0	0	0.53807	1	3829	3829		49.536	0	1	2066600			33961	9063	27970	27995	37403	37403					0.08684523117221943
LPRCLCPA	8	Unmodified	_LPRCLCPA_					0	0	0		nc|ENSG00000162888|Q96MC9|IKBKE-AS1	nc|ENSG00000162888|Q96MC9|IKBKE-AS1	nc|ENSG00000162888|Q96MC9|IKBKE-AS1	MULTI-MSMS	OvCa99_classI_Rep5	1	436.7297668457031	2	436.727684	871.440814	2.0928	0.00091396	3.5548	0.0015525	5.6476	0.0024664	436.72903784672457	123.4	0.69611	123.4	123.04	123.74	0					19	14	2	0	0	0	0.72922	1	14236	14236		37.028	3.5129	1	78190			33962	15134	27971	27996	37404	37404					-4.865189646352519E-05
LPREPQLLD	9	Unmodified	_LPREPQLLD_					0	0	0			REV__nc|ENSG00000103197|P49815-4|TSC2	REV__nc|ENSG00000103197|P49815-4|TSC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.8063354492188	2	540.806031	1079.59751	0.68008	0.00036779	1.5262	0.00082536	2.2063	0.0011932	540.8066886109204	85.264	1.5773	82.617	82.215	83.792	-2.6463					76	31	4	0	0	0	0.35444	1	7160	7160		56.721	0.28726	1	394320	+		33963	17603	27972	27997	37405	37405					0.060894145060501614
LPRERKKL	8	Unmodified	_LPRERKKL_					0	0	0		ENST00000361413.7_1_17:6482093-6482201:-|nuORF	ENST00000361413.7_1_17:6482093-6482201:-|nuORF	ENST00000361413.7_1_17:6482093-6482201:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.3395385742188	2	520.340375	1038.6662	-0.78006	-0.0004059	0.73752	0.00038376	-0.042543	-2.2137E-05	520.3404101251207	39.944	1.9528	36.99	36.616	38.569	-2.9541					93	37	5	0	0	0	0.75241	1	1718	1718		25.45	0	1	1048100			33964	10796	27973	27998	37406	37406					0.14841123596397665
LPRETLGQI	9	Unmodified	_LPRETLGQI_					0	0	0		nc|ENSG00000275066|Q9UMZ2-6|SYNRG;nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG;SYNRG|p.Q605Ifs*5|1|0.09|ENSG00000275066|chr17:37553910-37553911|-/AT|frameshift_variant	nc|ENSG00000275066|Q9UMZ2-6|SYNRG	nc|ENSG00000275066|Q9UMZ2-6|SYNRG	MULTI-MSMS	OvCa99_classI_Rep5	1	513.7999877929688	2	513.800749	1025.58694	0.25052	0.00012872	-1.0099	-0.0005189	-0.7594	-0.00039018	513.8001938561878	46.002	1.0093	46.002	45.71	46.719	0					71	22	5	0	0	0	0.3076	1	3209	3209		62.107	5.3864	1	10100000			33965	9567	27974	27999	37407	37407					0.07517431851601941
LPRFSTGS	8	Unmodified	_LPRFSTGS_					0	0	0			REV__ENST00000215570.7_1_19:2426444-2426798:-|nuORF	REV__ENST00000215570.7_1_19:2426444-2426798:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	432.7323303222656	2	432.732335	863.450116	-1.2078	-0.00052263	1.49	0.00064479	0.28228	0.00012215	432.73281308349294	53.901	1.3434	51.087	50.578	51.922	-2.8139					53	26	3	0	0	0	0.67745	1	3673	3673		47.916	3.7988	1	138710	+		33966	23709	27975	28000	37408	37408					0.012929426918958598
LPRGAAKAI	9	Unmodified	_LPRGAAKAI_					0	0	0		chrX:48904892-48905260|122|10.62|0.22|5.62|-|1|SLC35A2,None|1;nc|ENSG00000102100|P78381-5|SLC35A2;nc|ENSG00000102100|P78381-2|SLC35A2;ENSG00000102100|ENST00000247138|SLC35A2;nc|ENSG00000102100|P78381-4|SLC35A2	chrX:48904892-48905260|122|10.62|0.22|5.62|-|1|SLC35A2,None|1	chrX:48904892-48905260|122|10.62|0.22|5.62|-|1|SLC35A2,None|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	448.7884216308594	2	448.787444	895.560336	0.54524	0.0002447	-0.86697	-0.00038908	-0.32172	-0.00014439	448.78693781374767	47.503	1.5749	44.395	44.082	45.657	-3.1077					80	30	4	0	0	0	0.29717	1	2555	2555		63.306	0.32785	1	680440			33967	570	27976	28001	37409	37409					0.10837787750938332
LPRGARLSRAA	11	Unmodified	_LPRGARLSRAA_					0	0	0			REV__HECTD3|p.D550Nfs*10|1|0.08|ENSG00000126107|chr1:45006770-45006771|-/ATTG|frameshift_variant	REV__HECTD3|p.D550Nfs*10|1|0.08|ENSG00000126107|chr1:45006770-45006771|-/ATTG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3561401367188	2	584.357088	1166.69962	-2.312	-0.0013511	1.1487	0.00067126	-1.1633	-0.0006798	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.72521	1	14758	14758		12.812	1.9462	1	180810	+		33968	18773	27977	28002	37410	37410					0.122941253683166
LPRGMQPTEF	10	Unmodified	_LPRGMQPTEF_					0	0	0		PSMB8|p.G255Vfs*3|1|0.1|ENSG00000204264|chr6:32841026-32841026|C/-|frameshift_variant;ENSG00000204264|ENST00000374882|PSMB8	PSMB8|p.G255Vfs*3|1|0.1|ENSG00000204264|chr6:32841026-32841026|C/-|frameshift_variant	PSMB8|p.G255Vfs*3|1|0.1|ENSG00000204264|chr6:32841026-32841026|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	588.296875	2	588.297516	1174.58048	-0.12574	-7.3971E-05	-0.18426	-0.0001084	-0.31	-0.00018237	588.2970977003064	86.655	1.6797	85.224	84.751	86.431	-1.4311					103	32	5	0	0	0	0.39172	2	7542	7536;7542		69.628	16.276	1	558380			33969	8964	27978	28003	37411;37412	37412					0.00017170628598250914
LPRGMQPTEF	10	Unmodified	_LPRGMQPTEF_					0	0	0		PSMB8|p.G255Vfs*3|1|0.1|ENSG00000204264|chr6:32841026-32841026|C/-|frameshift_variant;ENSG00000204264|ENST00000374882|PSMB8	PSMB8|p.G255Vfs*3|1|0.1|ENSG00000204264|chr6:32841026-32841026|C/-|frameshift_variant	PSMB8|p.G255Vfs*3|1|0.1|ENSG00000204264|chr6:32841026-32841026|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	588.2987670898438	2	588.297516	1174.58048	-2.3041	-0.0013555	2.0946	0.0012322	-0.20949	-0.00012324	588.2986423861071	87.392	1.5321	85.216	84.884	86.416	-2.1768					86	29	5	0	0	0	0.1722	1	5257	5257		98.629	35.323	1	1241900			33970	8964	27978	28003	37413	37413					0.00017170628598250914
LPRGMQPTEF	10	Unmodified	_LPRGMQPTEF_					0	0	0		PSMB8|p.G255Vfs*3|1|0.1|ENSG00000204264|chr6:32841026-32841026|C/-|frameshift_variant;ENSG00000204264|ENST00000374882|PSMB8	PSMB8|p.G255Vfs*3|1|0.1|ENSG00000204264|chr6:32841026-32841026|C/-|frameshift_variant	PSMB8|p.G255Vfs*3|1|0.1|ENSG00000204264|chr6:32841026-32841026|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	588.2989501953125	2	588.297516	1174.58048	-2.2315	-0.0013128	0.1573	9.2538E-05	-2.0742	-0.0012203	588.2974844195226	87.759	1.4634	85.132	84.799	86.262	-2.6269					76	28	4	0	0	0	0.15491	1	7471	7471		101.25	16.337	1	1131500			33971	8964	27978	28003	37414	37414					0.00017170628598250914
LPRGMQPTEF	10	Oxidation (M)	_LPRGM(Oxidation (M))QPTEF_		LPRGM(1)QPTEF		LPRGM(82)QPTEF	0	0	1		PSMB8|p.G255Vfs*3|1|0.1|ENSG00000204264|chr6:32841026-32841026|C/-|frameshift_variant;ENSG00000204264|ENST00000374882|PSMB8	PSMB8|p.G255Vfs*3|1|0.1|ENSG00000204264|chr6:32841026-32841026|C/-|frameshift_variant	PSMB8|p.G255Vfs*3|1|0.1|ENSG00000204264|chr6:32841026-32841026|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	596.2953491210938	2	596.294973	1190.57539	-0.30043	-0.00017914	-0.98382	-0.00058665	-1.2843	-0.00076579	596.294021178013	70.357	1.9965	66.876	66.201	68.198	-3.4812					123	40	4	0	0	0	0.29438	3	5293	5272;5281;5293		81.525	17.506	1	1128500			33972	8964	27978	28004	37415;37416;37417	37417		270			-0.012271332340333174
LPRGMQPTEF	10	Oxidation (M)	_LPRGM(Oxidation (M))QPTEF_					0	0	1		PSMB8|p.G255Vfs*3|1|0.1|ENSG00000204264|chr6:32841026-32841026|C/-|frameshift_variant;ENSG00000204264|ENST00000374882|PSMB8	PSMB8|p.G255Vfs*3|1|0.1|ENSG00000204264|chr6:32841026-32841026|C/-|frameshift_variant	PSMB8|p.G255Vfs*3|1|0.1|ENSG00000204264|chr6:32841026-32841026|C/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	596.294973	1190.57539	-1.1206	-0.00066823	0.71848	0.00042843	-0.40216	-0.0002398	596.2953060951105	69.26	1.6436	66.639	65.819	67.463	-2.6203	-0.11811	0.00026574	NaN	81.525	72	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	288030			33973	8964	27978	28004				270			-0.012271332340333174
LPRGPLASLL	10	Unmodified	_LPRGPLASLL_					0	0	0		nc|ENSG00000062038|P22223-2|CDH3;ENSG00000062038|ENST00000264012|CDH3	nc|ENSG00000062038|P22223-2|CDH3	nc|ENSG00000062038|P22223-2|CDH3	MULTI-MSMS	OvCa9_classI_Rep2	2	518.8292846679688	2	518.829309	1035.64407	-0.53777	-0.00027901	0.10892	5.6512E-05	-0.42884	-0.0002225	518.8292895658562	121.25	2.223	121.05	120.51	122.73	-0.19719					126	44	4	0	0	0	0.48198	2	11686	11686;11691		56.721	2.2742	1	627930			33974	1275	27979	28005	37418;37419	37418					0.12766899127996112
LPRGPLASLL	10	Unmodified	_LPRGPLASLL_					0	0	0		nc|ENSG00000062038|P22223-2|CDH3;ENSG00000062038|ENST00000264012|CDH3	nc|ENSG00000062038|P22223-2|CDH3	nc|ENSG00000062038|P22223-2|CDH3	MULTI-MSMS	OvCa9_classI_Rep3	3	518.8284912109375	2	518.829309	1035.64407	1.7024	0.00088324	-2.0698	-0.0010739	-0.36745	-0.00019064	518.8281964515016	122.5	2.5536	121.47	120.64	123.19	-1.0286					133	48	4	0	0	0	0.44431	1	9424	9424		62.107	3.3255	1	994930			33975	1275	27979	28005	37420	37420					0.12766899127996112
LPRGPLASLL	10	Unmodified	_LPRGPLASLL_					0	0	0		nc|ENSG00000062038|P22223-2|CDH3;ENSG00000062038|ENST00000264012|CDH3	nc|ENSG00000062038|P22223-2|CDH3	nc|ENSG00000062038|P22223-2|CDH3	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.8282470703125	2	518.829309	1035.64407	0.0085595	4.4409E-06	-0.59769	-0.0003101	-0.58913	-0.00030566	518.8289766262699	122.91	2.4522	121.55	121.01	123.46	-1.3666					110	48	3	0	0	0	0.48398	1	11685	11685		56.434	1.6575	1	898440			33976	1275	27979	28005	37421	37421					0.12766899127996112
LPRGPRPQ	8	Unmodified	_LPRGPRPQ_					0	0	0			REV__ENST00000487852.1_1_13:33590814-33628082:+|nuORF	REV__ENST00000487852.1_1_13:33590814-33628082:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	460.77447509765625	2	460.774868	919.535184	-0.31989	-0.0001474	0.20949	9.6526E-05	-0.1104	-5.0871E-05	460.7747904442252	38.902	1.5392	35.976	35.651	37.19	-2.9264					68	30	4	0	0	0	0.7043	1	1568	1568		42.474	7.2737	1	471040	+		33977	26609	27980	28006	37422	37422					0.07219732948362889
LPRGRTFTL	9	Unmodified	_LPRGRTFTL_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;ENST00000585606.5_1_19:14590895-14591279:-|nuORF;nc|ENSG00000123159|O14908-2|GIPC1	ENSG00000123159|ENST00000393033|GIPC1	ENSG00000123159|ENST00000393033|GIPC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.81787109375	2	530.816733	1059.61891	-1.9545	-0.0010375	1.0125	0.00053744	-0.94204	-0.00050005	530.8170911149565	73.299	1.0629	69.902	69.495	70.557	-3.3961					64	21	4	0	0	0	0.51865	1	5666	5666		40.778	6.6056	1	686390			33978	3579	27981	28007	37423	37423					0.09148844325432037
LPRGSRAHITL	11	Unmodified	_LPRGSRAHITL_					0	0	0		nc|ENSG00000173786|P09543-2|CNP;ENSG00000173786|ENST00000393892|CNP;ENST00000472031.1_1_17:40118826-40125939:+|nuORF;ENST00000486438.1_1_17:40123824-40125939:+|nuORF	nc|ENSG00000173786|P09543-2|CNP	nc|ENSG00000173786|P09543-2|CNP	MULTI-MSMS	OvCa9_classI_Rep2	2	407.5798645019531	3	407.578923	1219.71494	0.61537	0.00025081	-0.77295	-0.00031504	-0.15758	-6.4227E-05	407.5786357790963	57.72	2.7424	54.928	54.526	57.269	-2.792					151	53	5	0	0	0	0.45478	3	4149	4115;4131;4149		57.149	14.811	1	1780300			33979	7414	27982	28008	37424;37425;37426	37426					0.11386992165512311
LPRGSRAHITL	11	Unmodified	_LPRGSRAHITL_					0	0	0		nc|ENSG00000173786|P09543-2|CNP;ENSG00000173786|ENST00000393892|CNP;ENST00000472031.1_1_17:40118826-40125939:+|nuORF;ENST00000486438.1_1_17:40123824-40125939:+|nuORF	nc|ENSG00000173786|P09543-2|CNP	nc|ENSG00000173786|P09543-2|CNP	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		3	407.578923	1219.71494	1.0344	0.00042159	-1.5118	-0.00061616	-0.47736	-0.00019456	407.5782791583038	58.499	2.3811	55.107	54.752	57.133	-3.392	0.089421	-0.00062084	NaN	57.149	132	47	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1731900			33980	7414	27982	28008							0.11386992165512311
LPRILTPKL	9	Unmodified	_LPRILTPKL_					0	0	0			REV__ENST00000401558.6_1_2:61761019-61764833:-|nuORF	REV__ENST00000401558.6_1_2:61761019-61764833:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.3042602539062	2	525.855327	1049.6961	-0.53425	-0.00028094	-0.33847	-0.00017799	-0.87272	-0.00045893	525.854990486346	75.245	1.3502	72.014	71.58	72.931	-3.2308					56	27	3	0	0	0	0.027417	1	5907	5907		45.952	5.1738	1	108490	+		33981	25412	27983	28009	37427	37427					0.1732406254172929
LPRKHHRIH	9	Unmodified	_LPRKHHRIH_					0	0	0		nc|ENSG00000244687|Q13404-1|UBE2V1;ENST00000453505.6_1_20:48741597-48767785:-|nuORF;nc|ENSG00000240849|A5PLL7-2|PEDS1;ENSG00000240849|ENST00000371652|PEDS1	nc|ENSG00000244687|Q13404-1|UBE2V1;ENST00000453505.6_1_20:48741597-48767785:-|nuORF	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	597.3593139648438	2	597.359965	1192.70538	-5.052	-0.0030179	2.9195	0.001744	-2.1325	-0.0012739	597.3615454958483	157.14	0.96848	155.97	155.65	156.62	-1.1707					64	22	4	0	0	0	0.69895	1	13531	13531		18.324	2.6826	1	132000			33982	15345;9345	27984	28010	37428	37428					0.11673268670620018
LPRKKGPWGFA	11	Unmodified	_LPRKKGPWGFA_					0	0	0		ENST00000406961.5_1_2:24991652-24991949:+|nuORF	ENST00000406961.5_1_2:24991652-24991949:+|nuORF	ENST00000406961.5_1_2:24991652-24991949:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	628.8682250976562	2	628.866757	1255.71896	-2.1168	-0.0013312	-0.19986	-0.00012568	-2.3167	-0.0014569	628.8665688452137	103.89	1.1858	103.89	103.51	104.7	0					85	27	5	0	0	0	0.65063	1	11670	11670		30.504	6.3009	1	6410400			33983	11489	27985	28011	37429	37429					0.10133081659205345
LPRLGRLRVST	11	Unmodified	_LPRLGRLRVST_					0	0	0			REV__ENSG00000114270|ENST00000681320|COL7A1	REV__ENSG00000114270|ENST00000681320|COL7A1	MULTI-SECPEP	OvCa9_classI_Rep2	2	423.22186279296875	3	423.270089	1266.78844	-1.1562	-0.00048937	1.0652	0.00045085	-0.090999	-3.8517E-05	423.2703850942198	51.561	1.4351	48.748	48.453	49.888	-2.8129					46	28	3	0	0	0	0.026033	1	3384	3384		22.562	0	1	67705	+		33984	18183	27986	28012	37430	37430					0.16571540607969837
LPRLLAPPSA	10	Unmodified	_LPRLLAPPSA_					0	0	0			REV__ENSG00000226490|ENST00000643770|C8orf90	REV__ENSG00000226490|ENST00000643770|C8orf90	MULTI-MSMS	OvCa9_classI_Rep2	2	517.8184204101562	2	517.821484	1033.62842	-2.2306	-0.0011551	-1.8311	-0.0009482	-4.0617	-0.0021033	517.8203985316244	146.61	1.347	146.38	145.92	147.27	-0.22696					66	26	3	0	0	0	0.65434	1	14799	14799		35.618	7.736	1	90796	+		33985	23372	27987	28013	37431	37431					0.11294612610936383
LPRLLAPPSA	10	Unmodified	_LPRLLAPPSA_					0	0	0			REV__ENSG00000226490|ENST00000643770|C8orf90	REV__ENSG00000226490|ENST00000643770|C8orf90	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	517.821484	1033.62842	-2.2306	-0.0011551	-1.8311	-0.0009482	-4.0617	-0.0021033	517.8203985316244	146.61	1.347	146.38	145.92	147.27	-0.22696	0	0	NaN	35.618	66	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90796	+		33986	23372	27987	28013							0.11294612610936383
LPRLLRKMREF	11	Unmodified	_LPRLLRKMREF_					0	0	0		ENST00000237654.8_1_4:77977239-77977427:-|nuORF	ENST00000237654.8_1_4:77977239-77977427:-|nuORF	ENST00000237654.8_1_4:77977239-77977427:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	486.9576110839844	3	486.962379	1457.86531	-4.7825	-0.0023289	-2.2595	-0.0011003	-7.042	-0.0034292	486.9610953135575	160.39	2.6298	160.16	159.25	161.88	-0.22696					128	53	4	0	0	0	0.72548	1	16414	16414		9.2118	2.5522	1	96650			33987	9746	27988	28014	37432	37432					0.15469015832763944
LPRLLWVLS	9	Unmodified	_LPRLLWVLS_					0	0	0		chr1:153628867-153629160|346|19.05|0.27|6.14|+|2|S100A1,None|1	chr1:153628867-153629160|346|19.05|0.27|6.14|+|2|S100A1,None|1	chr1:153628867-153629160|346|19.05|0.27|6.14|+|2|S100A1,None|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.8035278320312	2	548.847502	1095.68045	0.26015	0.00014278	-3.7202	-0.0020418	-3.4601	-0.0018991	549.3460278380834	115.04	0.41222	113.64	113.41	113.82	-1.3977					11	7	2	0	0	0	0.027462	1	10685	10685		37.159	1.5408	1	12734			33988	242	27989	28015	37433	37433					0.13643776024696308
LPRLPCAP	8	Unmodified	_LPRLPCAP_					0	0	0			REV__ENST00000321599.8_2_3:49770337-49775792:-|nuORF	REV__ENST00000321599.8_2_3:49770337-49775792:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	434.7315979003906	2	433.749473	865.484393	0.58882	0.0002554	-3.7156	-0.0016116	-3.1268	-0.0013562	433.74761754045227	58.204	1.1194	58.204	57.732	58.852	0					43	26	2	0	0	0	0.028476	1	4934	4934		7.6903	0	1	98189	+		33989	24450	27990	28016	37434	37434					0.0462706757914475
LPRLTPPVL	9	Unmodified	_LPRLTPPVL_					0	0	0		nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF	nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-3|CCT8	MULTI-MSMS	OvCa9_classI_Rep2	2	503.32623291015625	2	503.326402	1004.63825	0.14036	7.0648E-05	-0.73987	-0.0003724	-0.59951	-0.00030175	503.32594865659956	112.82	1.9244	112.7	112.28	114.2	-0.12174					111	38	5	0	0	0	0.16562	2	10695	10695;10732		82.241	28.889	1	946430			33990	5830	27991	28017	37435;37436	37435					0.13611800616320124
LPRLTPPVL	9	Unmodified	_LPRLTPPVL_					0	0	0		nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF	nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-3|CCT8	MULTI-MSMS	OvCa9_classI_Rep3	3	503.325439453125	2	503.326402	1004.63825	0.16809	8.4607E-05	-0.79943	-0.00040237	-0.63134	-0.00031777	503.32592163990955	113.76	2.5159	112.69	112.25	114.76	-1.0753					117	49	4	0	0	0	0.14998	9	8380	8358;8368;8380;8386;8398;8404;8410;8416;8424		84.916	19.112	1	1085400			33991	5830	27991	28017	37437;37438;37439;37440;37441;37442;37443;37444;37445	37439					0.13611800616320124
LPRLTPPVL	9	Unmodified	_LPRLTPPVL_					0	0	0		nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF	nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-3|CCT8	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.326171875	2	503.326402	1004.63825	0.16092	8.0995E-05	-0.74874	-0.00037686	-0.58781	-0.00029586	503.3259504864153	114.09	2.4187	112.65	112.2	114.61	-1.4461					133	47	5	0	0	0	0.14998	6	10592	10568;10580;10592;10604;10616;10628		84.916	29.688	1	1182900			33992	5830	27991	28017	37446;37447;37448;37449;37450;37451	37448					0.13611800616320124
LPRNSRIPCR	10	Unmodified	_LPRNSRIPCR_					0	0	0		NCKAP5L|p.S606Qfs*204|1|0.21|ENSG00000167566|chr12:49796044-49796045|-/G|frameshift_variant;nc|ENSG00000167566|Q9HCH0-2|NCKAP5L;ENSG00000167566|ENST00000335999|NCKAP5L	NCKAP5L|p.S606Qfs*204|1|0.21|ENSG00000167566|chr12:49796044-49796045|-/G|frameshift_variant	NCKAP5L|p.S606Qfs*204|1|0.21|ENSG00000167566|chr12:49796044-49796045|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3464965820312	2	606.343123	1210.67169	0.43476	0.00026361	4.4172	0.0026783	4.8519	0.0029419	606.3456901284329	58.226	1.2551	54.881	54.596	55.852	-3.3449					78	24	5	0	0	0	0.63752	1	3814	3814		25.574	1.0549	1	782000			33993	6809	27992	28018	37452	37452					0.0747847911657118
LPRPARVPHPL	11	Unmodified	_LPRPARVPHPL_					0	0	0			REV__ENST00000607166.1_1_10:31607104-31607347:-|nuORF	REV__ENST00000607166.1_1_10:31607104-31607347:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	626.3080444335938	2	626.885481	1251.75641	-0.27987	-0.00017545	0.081776	5.1264E-05	-0.19809	-0.00012418	626.8859201604182	94.206	0.34168	91.738	91.618	91.96	-2.4685					10	6	2	0	0	0	0.025329	1	8230	8230		44.117	6.3053	1	15616	+		33994	28083	27993	28019	37453	37453					0.14060172924860126
LPRPARVPHPL	11	Unmodified	_LPRPARVPHPL_					0	0	0			REV__ENST00000607166.1_1_10:31607104-31607347:-|nuORF	REV__ENST00000607166.1_1_10:31607104-31607347:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	626.885481	1251.75641	-0.51367	-0.00032201	-0.59553	-0.00037333	-1.1092	-0.00069534	626.8850076857443	93.018	0.40082	91.85	91.603	92.003	-1.168	0.096067	-0.00010867	NaN	44.117	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17588	+		33995	28083	27993	28019							0.14060172924860126
LPRPARVPHPL	11	Unmodified	_LPRPARVPHPL_					0	0	0			REV__ENST00000607166.1_1_10:31607104-31607347:-|nuORF	REV__ENST00000607166.1_1_10:31607104-31607347:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	626.885481	1251.75641	-0.42842	-0.00026857	-0.56417	-0.00035367	-0.99259	-0.00062224	626.8849998717202	93.635	0.51042	91.673	91.577	92.087	-1.9617	-0.080301	-6.9341E-05	NaN	44.117	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16967	+		33996	28083	27993	28019							0.14060172924860126
LPRPCRRLC	9	Unmodified	_LPRPCRRLC_					0	0	0		ENST00000457433.6_1_1:32042889-32042967:+|nuORF	ENST00000457433.6_1_1:32042889-32042967:+|nuORF	ENST00000457433.6_1_1:32042889-32042967:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	556.3321533203125	2	557.310238	1112.60592	-1.2932	-0.00072073	3.9883	0.0022227	2.6951	0.001502	557.3122655034339	62.891	0.89259	60.147	59.847	60.739	-2.7444					38	16	3	0	0	0	0.027462	1	4782	4782		17.365	0	1	54712			33997	12128	27994	28020	37454	37454					0.05412366670020674
LPRPMLLVL	9	Unmodified	_LPRPMLLVL_					0	0	0		ENST00000529654.5_1_8:145616841-145618286:+|nuORF;ENSG00000173137|ENST00000308860|ADCK5	ENST00000529654.5_1_8:145616841-145618286:+|nuORF	ENST00000529654.5_1_8:145616841-145618286:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	526.3397827148438	2	526.338455	1050.66236	-0.81474	-0.00042883	3.303	0.0017385	2.4883	0.0013097	526.3400987047603	85.909	2.9151	84.418	84.047	86.963	-1.4906					140	57	5	0	0	0	0.25214	1	7463	7463		68.485	10.673	1	922440			33998	7351	27995	28021	37455	37455					0.13905317778335302
LPRPPGAR	8	Unmodified	_LPRPPGAR_					0	0	0		ENST00000564006.5_1_16:77225374-77227441:+|nuORF;ENST00000439557.6_1_16:77225118-77228327:+|nuORF;ENST00000248248.7_1_16:77225118-77227542:+|nuORF	ENST00000564006.5_1_16:77225374-77227441:+|nuORF	ENST00000564006.5_1_16:77225374-77227441:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	432.9032287597656	2	432.264136	862.51372	-0.30267	-0.00013083	1.4148	0.00061156	1.1121	0.00048073	432.26467366006244	37.784	0.18376	37.784	37.668	37.851	0					6	3	2	0	0	0	0.028476	1	2084	2084		31.955	0	1	17293			33999	9784	27996	28022	37456	37456					0.07696347919659274
LPRPPMLLAL	10	Oxidation (M)	_LPRPPM(Oxidation (M))LLAL_		LPRPPM(1)LLAL		LPRPPM(51)LLAL	0	0	1		HEXB-UBA6|1|fusion;ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF;ENSG00000049860|ENST00000261416|HEXB	HEXB-UBA6|1|fusion	HEXB-UBA6|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	568.8462524414062	2	568.846645	1135.67874	-0.94066	-0.00053509	0.78408	0.00044602	-0.15658	-8.9071E-05	568.8468987403617	122.03	1.7301	121.81	120.93	122.66	-0.21803					88	34	3	0	0	0	0.52321	1	11788	11788		51.335	8.4712	1	269790			34000	14480	27997	28023	37457	37457		360			0.11632398944425404
LPRPPMLLAL	10	Oxidation (M)	_LPRPPM(Oxidation (M))LLAL_		LPRPPM(1)LLAL		LPRPPM(51)LLAL	0	0	1		HEXB-UBA6|1|fusion;ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF;ENSG00000049860|ENST00000261416|HEXB	HEXB-UBA6|1|fusion	HEXB-UBA6|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	568.845703125	2	568.846645	1135.67874	1.1361	0.00064626	-1.1496	-0.00065395	-0.013528	-7.6955E-06	568.845786397459	122.98	2.0826	121.95	121	123.08	-1.034					125	39	4	0	0	0	0.52321	2	9427	9427;9509		51.335	9.5837	1	474050			34001	14480	27997	28023	37458;37459	37458		360			0.11632398944425404
LPRPPMLLAL	10	Oxidation (M)	_LPRPPM(Oxidation (M))LLAL_		LPRPPM(1)LLAL		LPRPPM(53)LLAL	0	0	1		HEXB-UBA6|1|fusion;ENST00000515528.1_1_5:73981085-73985366:+|nuORF;ENST00000513079.5_1_5:73981085-74001232:+|nuORF;ENSG00000049860|ENST00000261416|HEXB	HEXB-UBA6|1|fusion	HEXB-UBA6|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	568.84619140625	2	568.846645	1135.67874	0.54685	0.00031108	-0.86263	-0.0004907	-0.31578	-0.00017963	568.8459810585302	123.26	2.2433	121.89	120.96	123.2	-1.3666					118	44	3	0	0	0	0.50656	2	11611	11611;11623		53.351	9.2347	1	383340			34002	14480	27997	28023	37460;37461	37460		360			0.11632398944425404
LPRPRILRG	9	Unmodified	_LPRPRILRG_					0	0	0			REV__ENST00000575556.1_1_16:67970595-67970706:-|nuORF	REV__ENST00000575556.1_1_16:67970595-67970706:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	539.3533935546875	2	539.353817	1076.69308	2.2939	0.0012372	-2.3996	-0.0012943	-0.10574	-5.7029E-05	539.3523735364151	63.128	1.3441	60.094	59.756	61.1	-3.0339					58	26	3	0	0	0	0.69895	1	2333	2333		18.324	0.95945	1	102560	+		34003	27776	27998	28024	37462	37462					0.15780232207612244
LPRPTELHHI	10	Unmodified	_LPRPTELHHI_					0	0	0		ENST00000586523.1_1_18:43665917-43666256:-|nuORF	ENST00000586523.1_1_18:43665917-43666256:-|nuORF	ENST00000586523.1_1_18:43665917-43666256:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	404.8995666503906	3	404.899773	1211.67749	0.98969	0.00040072	-1.1614	-0.00047026	-0.17174	-6.9537E-05	404.8992858109358	40.733	0.98371	40.733	40.479	41.462	0					65	21	5	0	0	0	0.60504	1	2483	2483		41.427	3.9184	1	4359300			34004	14047	27999	28025	37463	37463					0.08011900899896318
LPRPTPQASF	10	Unmodified	_LPRPTPQASF_					0	0	0		nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2;DAB2|p.S313Ffs*14|1|0.1|ENSG00000153071|chr5:39383023-39383024|-/G|frameshift_variant	nc|ENSG00000153071|P98082-3|DAB2	nc|ENSG00000153071|P98082-3|DAB2	MULTI-MSMS	OvCa9_classI_Rep2	2	557.3048706054688	2	557.306198	1112.59784	0.76161	0.00042445	-1.1921	-0.00066436	-0.43049	-0.00023991	557.305338519675	79.155	2.3119	77.415	76.512	78.824	-1.7398					80	45	2	0	0	0	0.38633	2	6629	6629;6648		70.399	15.622	1	417440			34005	5659	28000	28026	37464;37465	37464					0.04604834225892773
LPRPTPQASF	10	Unmodified	_LPRPTPQASF_					0	0	0		nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2;DAB2|p.S313Ffs*14|1|0.1|ENSG00000153071|chr5:39383023-39383024|-/G|frameshift_variant	nc|ENSG00000153071|P98082-3|DAB2	nc|ENSG00000153071|P98082-3|DAB2	MULTI-MSMS	OvCa9_classI_Rep3	3	557.3070678710938	2	557.306198	1112.59784	-0.15901	-8.8615E-05	-0.23592	-0.00013148	-0.39492	-0.00022009	557.3059120634497	79.754	2.1377	77.414	76.902	79.039	-2.3399					93	41	3	0	0	0	0.22073	3	4315	4304;4315;4328		91.265	14.491	1	880010			34006	5659	28000	28026	37466;37467;37468	37467					0.04604834225892773
LPRPTPQASF	10	Unmodified	_LPRPTPQASF_					0	0	0		nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2;DAB2|p.S313Ffs*14|1|0.1|ENSG00000153071|chr5:39383023-39383024|-/G|frameshift_variant	nc|ENSG00000153071|P98082-3|DAB2	nc|ENSG00000153071|P98082-3|DAB2	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.3068237304688	2	557.306198	1112.59784	0.078761	4.3894E-05	-0.761	-0.00042411	-0.68223	-0.00038021	557.3056333863977	79.955	2.0982	77.203	76.797	78.895	-2.7514					84	42	3	0	0	0	0.24997	3	6520	6495;6507;6520		86.882	18.095	1	1066400			34007	5659	28000	28026	37469;37470;37471	37471					0.04604834225892773
LPRPVPQNL	9	Unmodified	_LPRPVPQNL_					0	0	0		nc|ENSG00000011275|Q9NWF9-3|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;RNF216|p.L834Pfs*8|1|0.1|ENSG00000011275|chr7:5622959-5622960|CA/-|frameshift_variant;ENSG00000011275|ENST00000389902|RNF216	nc|ENSG00000011275|Q9NWF9-3|RNF216	nc|ENSG00000011275|Q9NWF9-3|RNF216	MULTI-MSMS	OvCa9_classI_Rep3	3	517.3115234375	2	517.311284	1032.60801	-0.32629	-0.0001688	-0.20297	-0.000105	-0.52926	-0.00027379	517.3110863016132	82.251	1.0955	79.955	79.484	80.579	-2.2963					52	21	3	0	0	0	0.29717	1	4628	4628		63.306	13.282	1	582730			34008	960	28001	28027	37472	37472					0.09301441951129163
LPRPVPQNL	9	Unmodified	_LPRPVPQNL_					0	0	0		nc|ENSG00000011275|Q9NWF9-3|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;RNF216|p.L834Pfs*8|1|0.1|ENSG00000011275|chr7:5622959-5622960|CA/-|frameshift_variant;ENSG00000011275|ENST00000389902|RNF216	nc|ENSG00000011275|Q9NWF9-3|RNF216	nc|ENSG00000011275|Q9NWF9-3|RNF216	MULTI-MATCH	OvCa9_classI_Rep2	2		2	517.311284	1032.60801	0.59272	0.00030662	-0.40443	-0.00020922	0.18828	9.74E-05	517.3106643478628	81.469	1.1733	79.82	79.265	80.438	-1.6485	0.0040713	-0.0004035	NaN	63.306	57	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297310			34009	960	28001	28027							0.09301441951129163
LPRPVPQNL	9	Unmodified	_LPRPVPQNL_					0	0	0		nc|ENSG00000011275|Q9NWF9-3|RNF216;nc|ENSG00000011275|Q9NWF9|RNF216;RNF216|p.L834Pfs*8|1|0.1|ENSG00000011275|chr7:5622959-5622960|CA/-|frameshift_variant;ENSG00000011275|ENST00000389902|RNF216	nc|ENSG00000011275|Q9NWF9-3|RNF216	nc|ENSG00000011275|Q9NWF9-3|RNF216	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	517.311284	1032.60801	-0.8671	-0.00044856	1.2201	0.00063116	0.35298	0.0001826	517.3115087055414	82.356	1.358	79.673	79.156	80.514	-2.6829	-0.1426	0.0012773	NaN	63.306	68	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	479300			34010	960	28001	28027							0.09301441951129163
LPRQIGDFI	9	Unmodified	_LPRQIGDFI_					0	0	0			REV__nc|ENSG00000114573|P38606-2|ATP6V1A	REV__nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.8323364257812	2	529.803291	1057.59203	-0.50003	-0.00026492	-1.8641	-0.0009876	-2.3641	-0.0012525	529.8023722843844	84.002	0.33989	81.339	81.118	81.458	-2.6629					9	6	2	0	0	0	0.027462	1	7011	7011		47.916	22.342	1	14735	+		34011	18193	28002	28028	37473	37473					0.06553735714237519
LPRQLVEA	8	Unmodified	_LPRQLVEA_					0	0	0			REV__ENST00000559298.5_1_15:67752062-67752158:-|nuORF	REV__ENST00000559298.5_1_15:67752062-67752158:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.27825927734375	2	463.276909	924.539266	-0.39295	-0.00018205	-0.13007	-6.0258E-05	-0.52302	-0.0002423	463.27682376212437	75.898	2.0127	72.959	72.497	74.51	-2.9389					92	41	4	0	0	0	0.68714	1	6033	6033		45.952	0	1	1343400	+		34012	27596	28003	28029	37474	37474					0.07397777651408433
LPRQPPMSL	9	Unmodified	_LPRQPPMSL_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	OvCa9_classI_Rep2	2	519.7913208007812	2	519.791869	1037.56919	-0.26612	-0.00013833	-0.52891	-0.00027492	-0.79503	-0.00041325	519.7915045735358	86.083	3.1611	84.593	83.85	87.011	-1.4906					155	62	5	0	0	0	0.074342	9	7462	7451;7456;7462;7467;7473;7480;7486;7500;7507		104.75	29.723	1	1389900			34013	7708	28004	28030	37475;37476;37477;37478;37479;37480;37481;37482;37483	37477					0.05190393325119658
LPRQPPMSL	9	Unmodified	_LPRQPPMSL_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	OvCa9_classI_Rep3	3	519.792724609375	2	519.791869	1037.56919	-0.78592	-0.00040852	0.2413	0.00012543	-0.54462	-0.00028309	519.7918935299025	86.881	2.3305	84.705	84.23	86.561	-2.1768					146	45	6	0	0	0	0.045281	6	5188	5177;5188;5194;5201;5207;5213		122.18	24.409	1	2538500			34014	7708	28004	28030	37484;37485;37486;37487;37488;37489	37485					0.05190393325119658
LPRQPPMSL	9	Unmodified	_LPRQPPMSL_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.7926025390625	2	519.791869	1037.56919	-0.92135	-0.00047891	0.048158	2.5032E-05	-0.87319	-0.00045388	519.7918073911636	87.25	2.4049	84.623	84.054	86.459	-2.6269					132	47	5	0	0	0	0.041116	4	7417	7393;7405;7417;7429		125.81	31.241	1	2275400			34015	7708	28004	28030	37490;37491;37492;37493	37492					0.05190393325119658
LPRQPPMSL	9	Oxidation (M)	_LPRQPPM(Oxidation (M))SL_		LPRQPPM(1)SL		LPRQPPM(130)SL	0	0	1		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.789306640625	2	527.789327	1053.5641	-1.4689	-0.00077525	0.97419	0.00051417	-0.49467	-0.00026108	527.7897714515674	69.84	1.7141	66.359	65.122	66.836	-3.4812					89	34	5	0	0	0	0.03923	6	5247	5224;5235;5247;5259;5271;5285		127.46	63.254	1	1806600			34016	7708	28004	28031	37494;37495;37496;37497;37498;37499	37496		231			0.03946089462488089
LPRQPPMSL	9	Oxidation (M)	_LPRQPPM(Oxidation (M))SL_		LPRQPPM(1)SL		LPRQPPM(130)SL	0	0	1		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.7901000976562	2	527.789327	1053.5641	-1.4516	-0.00076615	1.0873	0.00057385	-0.36436	-0.0001923	527.7898436298075	70.538	1.5567	67.057	66.688	68.245	-3.4812					78	31	3	0	0	0	0.03923	4	5329	5306;5317;5329;5341		127.46	53.207	1	2116500			34017	7708	28004	28031	37500;37501;37502;37503	37502		231			0.03946089462488089
LPRQPPMSL	9	Oxidation (M)	_LPRQPPM(Oxidation (M))SL_					0	0	1		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MATCH	OvCa9_classI_Rep2	2		2	527.789327	1053.5641	-1.1776	-0.0006215	1.0187	0.00053764	-0.15888	-8.3857E-05	527.7897494879629	68.987	0.9931	66.367	65.622	66.615	-2.6203	0.0041948	2.0694E-05	NaN	127.46	61	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	399480			34018	7708	28004	28031				231			0.03946089462488089
LPRQSQITI	9	Unmodified	_LPRQSQITI_					0	0	0		ENSG00000168386|ENST00000477258|FILIP1L	ENSG00000168386|ENST00000477258|FILIP1L	ENSG00000168386|ENST00000477258|FILIP1L	MULTI-MSMS	OvCa9_classI_Rep3	3	528.3140258789062	2	528.314023	1054.61349	-0.67643	-0.00035737	-0.074311	-3.926E-05	-0.75074	-0.00039663	528.3140144640237	74.33	2.708	71.92	71.548	74.256	-2.4106					138	53	5	0	0	0	0.16264	1	3715	3715		82.75	4.4867	1	2943500			34019	6898	28005	28032	37504	37504					0.08837120742941806
LPRRRSRQG	9	Unmodified	_LPRRRSRQG_					0	0	0			REV__ENST00000373517.3_1_X:72434414-72434678:-|nuORF	REV__ENST00000373517.3_1_X:72434414-72434678:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.7975463867188	2	563.33923	1124.66391	1.2094	0.00068131	0.99782	0.00056211	2.2072	0.0012434	563.3395062738572	58.354	0.64878	54.962	54.752	55.4	-3.392					17	12	2	0	0	0	0.027462	1	3887	3887		17.365	0	1	19856	+		34020	25044	28006	28033	37505	37505					0.10656087911320355
LPRRTVIGSGR	11	Unmodified	_LPRRTVIGSGR_					0	0	0			REV__nc|ENSG00000106976|Q05193-5|DNM1;REV__nc|ENSG00000079805|P50570-3|DNM2	REV__nc|ENSG00000106976|Q05193-5|DNM1	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3687133789062	2	606.370195	1210.72584	-2.264	-0.0013728	1.1871	0.00071982	-1.0769	-0.00065302	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.72479	1	12627	12627		18.262	0.79408	1	205770	+		34021	17832;17045	28007	28034	37506	37506					0.12890394539772387
LPRRWTRWCRR	11	Unmodified	_LPRRWTRWCRR_					0	0	0		TCEA1|p.D3Efs*28|1|0.05|ENSG00000187735|chr8:54022117-54022118|-/GACGT|frameshift_variant;ENST00000521604.6_1_8:54923030-54934756:-|nuORF	TCEA1|p.D3Efs*28|1|0.05|ENSG00000187735|chr8:54022117-54022118|-/GACGT|frameshift_variant	TCEA1|p.D3Efs*28|1|0.05|ENSG00000187735|chr8:54022117-54022118|-/GACGT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.2968139648438	3	529.296755	1584.86844	-0.92122	-0.0004876	1.1499	0.00060865	0.22871	0.00012106	529.2973943446033	21.891	1.5143	20.552	20.27	21.785	-1.3386					128	35	6	0	0	0	0.72575	1	303	303		5.6988	0.55642	1	1347900			34022	13126	28008	28035	37507	37507					0.09939703730174188
LPRSDPNLS	9	Unmodified	_LPRSDPNLS_					0	0	0		nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;nc|ENSG00000128512|Q8N1I0-4|DOCK4;ENST00000486186.1_7:111368332-111379399:-|nuORF	nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.767822265625	2	499.766906	997.519259	-0.14707	-7.3502E-05	-0.43133	-0.00021556	-0.5784	-0.00028907	499.76672181422185	66.809	2.3076	63.319	62.756	65.064	-3.4902					120	46	4	0	0	0	0.035142	1	4865	4865		131.03	4.7888	1	4232900			34023	3882	28009	28036	37508	37508					0.020399819208023473
LPRSIGNLTQL	11	Unmodified	_LPRSIGNLTQL_					0	0	0		ENSG00000148356|ENST00000300417|LRSAM1;nc|ENSG00000148356|Q6UWE0-2|LRSAM1	ENSG00000148356|ENST00000300417|LRSAM1	ENSG00000148356|ENST00000300417|LRSAM1	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3588256835938	2	606.358962	1210.70337	0.38634	0.00023426	-1.0139	-0.00061477	-0.62752	-0.0003805	606.3582874939276	105.17	1.5135	103.15	102.79	104.31	-2.0161					81	29	4	0	0	0	0.25724	1	9552	9552		63.426	3.4957	1	610230			34024	5403	28010	28037	37509	37509					0.10644750351502807
LPRSLAILSLA	11	Unmodified	_LPRSLAILSLA_					0	0	0		nc|ENSG00000182504|Q8IW35-2|CEP97;ENSG00000182504|ENST00000341893|CEP97;ENST00000489172.5_1_3:101443520-101477325:+|nuORF	nc|ENSG00000182504|Q8IW35-2|CEP97	nc|ENSG00000182504|Q8IW35-2|CEP97	MULTI-MSMS	OvCa9_classI_Rep2	2	577.36767578125	2	577.368798	1152.72304	-0.0015386	-8.8833E-07	-0.31024	-0.00017912	-0.31177	-0.00018001	577.368591979319	125.62	1.9266	125.38	125.01	126.94	-0.2359					114	38	5	0	0	0	0.5804	2	12231	12231;12268		46.457	5.6786	1	983740			34025	8003	28011	28038	37510;37511	37510					0.1527912636227029
LPRSLAILSLA	11	Unmodified	_LPRSLAILSLA_					0	0	0		nc|ENSG00000182504|Q8IW35-2|CEP97;ENSG00000182504|ENST00000341893|CEP97;ENST00000489172.5_1_3:101443520-101477325:+|nuORF	nc|ENSG00000182504|Q8IW35-2|CEP97	nc|ENSG00000182504|Q8IW35-2|CEP97	MULTI-MSMS	OvCa9_classI_Rep4_	4	577.36865234375	2	577.368798	1152.72304	-1.6942	-0.00097816	1.3228	0.00076377	-0.37133	-0.00021439	577.3694914290571	127.2	2.4686	125.77	125.44	127.91	-1.4357					130	48	5	0	0	0	0.66495	1	12180	12180		38.754	8.1847	1	1097800			34026	8003	28011	28038	37512	37512					0.1527912636227029
LPRSLKALQ	9	Unmodified	_LPRSLKALQ_					0	0	0		ENST00000519726.2_1_8:8025406-8025547:-|nuORF;ENST00000468859.1_1_3:125581808-125604769:-|nuORF	ENST00000519726.2_1_8:8025406-8025547:-|nuORF	ENST00000519726.2_1_8:8025406-8025547:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.8162231445312	2	513.326934	1024.63931	-0.12289	-6.3085E-05	-0.57116	-0.00029319	-0.69405	-0.00035627	513.326463372766	74.493	1.2765	72.083	71.796	73.073	-2.4106					48	25	3	0	0	0	0.027418	1	3768	3768		40.778	4.3314	1	117830			34027	12337	28012	28039	37513	37513					0.12798014985219197
LPRTAISEL	9	Unmodified	_LPRTAISEL_					0	0	0		nc|ENSG00000187531|Q9NRC8-3|SIRT7;ENST00000574992.5_1_17:79871999-79873399:-|nuORF;ENST00000572976.5_1_17:79872158-79873644:-|nuORF;ENSG00000187531|ENST00000328666|SIRT7	nc|ENSG00000187531|Q9NRC8-3|SIRT7	nc|ENSG00000187531|Q9NRC8-3|SIRT7	MULTI-MSMS	OvCa9_classI_Rep3	3	500.2956848144531	2	500.295299	998.576045	-0.84121	-0.00042085	0.51437	0.00025734	-0.32684	-0.00016352	500.29556807298985	88.017	1.3011	85.886	85.545	86.846	-2.1309					70	25	4	0	0	0	0.2784	1	5335	5335		65.465	1.9315	1	577510			34028	15225	28013	28040	37514	37514					0.07670029477310436
LPRTIFPTSTI	11	Unmodified	_LPRTIFPTSTI_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;ENST00000546534.1_1_12:46325244-46326951:-|nuORF	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-MSMS	OvCa9_classI_Rep2	2	623.3646850585938	2	623.363713	1244.71287	-0.18223	-0.0001136	0.080891	5.0424E-05	-0.10134	-6.3172E-05	623.36362746834	111.93	1.3305	111.79	111.47	112.8	-0.13961					60	26	3	0	0	0	0.1379	3	10582	10578;10582;10588		89.029	25.495	1	241230			34029	4757	28014	28041	37515;37516;37517	37516					0.10030518637040586
LPRTIFPTSTI	11	Unmodified	_LPRTIFPTSTI_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;ENST00000546534.1_1_12:46325244-46326951:-|nuORF	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-MSMS	OvCa9_classI_Rep3	3	623.3641967773438	2	623.363713	1244.71287	2.2047	0.0013743	-2.6364	-0.0016434	-0.4317	-0.0002691	623.361965271561	112.86	1.3039	111.78	111.46	112.77	-1.0753					64	25	4	0	0	0	0.079434	2	8268	8268;8275		101.46	19.219	1	281590			34030	4757	28014	28041	37518;37519	37518					0.10030518637040586
LPRTIFPTSTI	11	Unmodified	_LPRTIFPTSTI_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;ENST00000546534.1_1_12:46325244-46326951:-|nuORF	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-MSMS	OvCa9_classI_Rep4_	4	623.3656616210938	2	623.363713	1244.71287	0.38758	0.0002416	-0.82664	-0.0005153	-0.43906	-0.00027369	623.3630605243285	113.2	1.4842	111.76	111.46	112.94	-1.4461					69	29	5	0	0	0	0.4397	2	10476	10476;10498		58.246	11.789	1	316200			34031	4757	28014	28041	37520;37521	37520					0.10030518637040586
LPRTILVPP	9	Unmodified	_LPRTILVPP_					0	0	0			REV__nc|ENSG00000134571|Q14896-2|MYBPC3	REV__nc|ENSG00000134571|Q14896-2|MYBPC3	MULTI-MSMS	OvCa9_classI_Rep2	2	503.32611083984375	2	503.326402	1004.63825	0.14036	7.0648E-05	-0.73987	-0.0003724	-0.59951	-0.00030175	503.32594865659956	112.82	1.9244	112.7	112.28	114.2	-0.12174					111	38	5	0	0	0	0.19716	1	10673	10673		76.847	10.417	1	946430	+		34032	19212	28015	28042	37522	37522					0.13611800616331493
LPRTILVPP	9	Unmodified	_LPRTILVPP_					0	0	0			REV__nc|ENSG00000134571|Q14896-2|MYBPC3	REV__nc|ENSG00000134571|Q14896-2|MYBPC3	MULTI-MSMS	OvCa9_classI_Rep3	3	503.3261413574219	2	503.326402	1004.63825	0.16809	8.4607E-05	-0.79943	-0.00040237	-0.63134	-0.00031777	503.32592163990955	113.76	2.5159	112.69	112.25	114.76	-1.0753					117	49	4	0	0	0	0.24951	1	8374	8374		68.787	12.066	1	1085400	+		34033	19212	28015	28042	37523	37523					0.13611800616331493
LPRVAGKLGK	10	Unmodified	_LPRVAGKLGK_					0	0	0		nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000477457.1_1_2:238455116-238462232:+|nuORF;PGAP3-MLPH|1|fusion	nc|ENSG00000115648|Q9BV36-5|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.822265625	2	519.842751	1037.67095	1.4371	0.00074709	-1.7129	-0.00089042	-0.27573	-0.00014334	519.8420022091847	133.59	0.42468	133.59	133.49	133.91	0					10	8	2	0	0	0	0.02725	1	15566	15566		15.642	8.4485	1	87321			34034	3115	28016	28043	37524	37524					0.15362007739167893
LPRVDAKVI	9	Unmodified	_LPRVDAKVI_					0	0	0		ENSG00000183549|ENST00000331849|ACSM5	ENSG00000183549|ENST00000331849|ACSM5	ENSG00000183549|ENST00000331849|ACSM5	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.8208923339844	2	505.821484	1009.62842	0.017413	8.8078E-06	0.23186	0.00011728	0.24928	0.00012609	505.8211344677053	111.76	1.5176	110.25	109.58	111.1	-1.5111					66	28	4	0	0	0	0.55011	1	10320	10320		37.812	2.1932	1	155480			34035	8083	28017	28044	37525	37525					0.1239861261092301
LPRVQIVDVKS	11	Unmodified	_LPRVQIVDVKS_					0	0	0			REV__nc|ENSG00000203668|Q9H1Y3-2|OPN3	REV__nc|ENSG00000203668|Q9H1Y3-2|OPN3	MULTI-MSMS	OvCa99_classI_Rep5	1	627.3857421875	2	627.382437	1252.75032	0.45246	0.00028386	-0.20501	-0.00012862	0.24745	0.00015525	627.381941059398	164.3	2.2705	164.3	163.48	165.75	0					225	84	3	0	0	0	0.69808	3	19197	19123;19185;19197		30.318	3.6248	1	178050	+		34036	16699	28018	28045	37526;37527;37528	37528					0.1340560990265658
LPRVVFRAPR	10	Unmodified	_LPRVVFRAPR_					0	0	0			REV__ENST00000574916.1_1_17:685618-686569:+|nuORF	REV__ENST00000574916.1_1_17:685618-686569:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	605.8253173828125	2	605.880199	1209.74584	1.8082	0.0010955	-0.76427	-0.00046306	1.0439	0.00063249	605.8796422468102	90.719	0.1227	90.719	90.615	90.738	0					4	2	2	0	0	0	0.027021	1	9742	9742		21.96	6.3181	1	145140	+		34037	21654	28019	28046	37529	37529					0.14936190270395855
LPSAFHILLL	10	Unmodified	_LPSAFHILLL_					0	0	0		ENST00000417775.5_1_1:75184899-75184968:-|nuORF	ENST00000417775.5_1_1:75184899-75184968:-|nuORF	ENST00000417775.5_1_1:75184899-75184968:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	562.3423461914062	2	562.347335	1122.68012	-2.9015	-0.0016316	-4.2839	-0.002409	-7.1854	-0.0040407	562.3448419475409	142.33	4.504	141.32	140	144.5	-1.0106					205	90	3	0	0	0	0.72319	1	11803	11803		27.882	3.3631	1	106680			34038	11627	28020	28047	37530	37530					0.12368356304864392
LPSALLPFF	9	Unmodified	_LPSALLPFF_					0	0	0			REV__ENST00000607726.1_1_1:214161346-214161979:+|nuORF	REV__ENST00000607726.1_1_1:214161346-214161979:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	502.2938537597656	2	502.794404	1003.57425	-1.1708	-0.00058868	2.1434	0.0010777	0.97263	0.00048903	502.79565339921277	39.638	1.0419	36.928	36.41	37.452	-2.7097					26	20	2	0	0	0	0.027462	1	1956	1956		28.254	1.4582	1	55491	+		34039	28089	28021	28048	37531	37531					0.07261020459372958
LPSALPAELAR	11	Unmodified	_LPSALPAELAR_					0	0	0		ENST00000528236.5_1_11:45945714-45947705:+|nuORF;ENSG00000165905|ENST00000401752|LARGE2	ENST00000528236.5_1_11:45945714-45947705:+|nuORF	ENST00000528236.5_1_11:45945714-45947705:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	569.7860107421875	2	569.334956	1136.65536	-0.5489	-0.00031251	-3.1886	-0.0018154	-3.7376	-0.0021279	569.332954256831	145.79	3.4335	144.35	141.85	145.28	-1.4357					104	65	2	0	0	0	0.025466	1	14324	14324		56.434	10.462	1	30886			34040	6610	28022	28049	37532	37532					0.09249676431477383
LPSAQRAL	8	Unmodified	_LPSAQRAL_					0	0	0		ENSG00000130749|ENST00000253048|ZC3H4	ENSG00000130749|ENST00000253048|ZC3H4	ENSG00000130749|ENST00000253048|ZC3H4	MULTI-MSMS	OvCa9_classI_Rep4_	4	428.256591796875	2	428.255977	854.497401	0.42461	0.00018184	-0.78693	-0.00033701	-0.36232	-0.00015517	428.2555300001591	62.05	1.7323	58.592	58.057	59.789	-3.4577					90	35	4	0	0	0	0.61436	1	4307	4307		60.972	5.4677	1	499820			34041	4009	28023	28050	37533	37533					0.0643322196290228
LPSATRALEL	10	Unmodified	_LPSATRALEL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	OvCa9_classI_Rep2	2	535.813232421875	2	535.813856	1069.61316	-0.96205	-0.00051548	0.27622	0.000148	-0.68582	-0.00036747	535.8138720952994	95.499	1.4395	94.471	94.12	95.559	-1.0281					45	28	2	0	0	0	0.16967	2	8581	8581;8586		99.013	16.262	1	571670			34042	5987	28024	28051	37534;37535	37534					0.08113701023080466
LPSATRALEL	10	Unmodified	_LPSATRALEL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	OvCa9_classI_Rep3	3	535.814453125	2	535.813856	1069.61316	0.13576	7.2742E-05	-0.086774	-4.6495E-05	0.048986	2.6247E-05	535.8134508320708	96.375	1.6738	94.546	94.075	95.749	-1.8286					52	32	3	0	0	0	0.11648	3	6332	6332;6338;6349		109.44	16.544	1	871960			34043	5987	28024	28051	37536;37537;37538	37536					0.08113701023080466
LPSATRALEL	10	Unmodified	_LPSATRALEL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MSMS	OvCa9_classI_Rep4_	4	535.8137817382812	2	535.813856	1069.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.897	1	94.471	93.971	94.971	-2.4256								0	0	0	0.090076	1	8566	8566		74.165	8.6996	1				34044	5987	28024	28051	37539	37539					0.08113701023080466
LPSATRALEL	10	Unmodified	_LPSATRALEL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MSMS	OvCa9_classI_Rep4_	4	535.814697265625	2	535.813856	1069.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.993	1	94.567	94.067	95.067	-2.4256								0	0	0	0.086433	1	8578	8578		99.013	21.695	1				34045	5987	28024	28051	37540	37540					0.08113701023080466
LPSATRALEL	10	Unmodified	_LPSATRALEL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MSMS	OvCa9_classI_Rep4_	4	535.8141479492188	2	535.813856	1069.61316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.091	1	94.665	94.165	95.165	-2.4256								0	0	0	0.081211	1	8590	8590		79.489	14.024	1				34046	5987	28024	28051	37541	37541					0.08113701023080466
LPSATYLPPN	10	Unmodified	_LPSATYLPPN_					0	0	0			REV__nc|ENSG00000196372|Q8WXK3-2|ASB13	REV__nc|ENSG00000196372|Q8WXK3-2|ASB13	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.8263549804688	2	536.787307	1071.56006	1.2478	0.00066982	1.2899	0.00069243	2.5378	0.0013622	536.7880089617828	131.13	0.56761	131.13	130.91	131.48	0					23	11	3	0	0	0	0.026849	1	15239	15239		32.812	8.2932	1	96622	+		34047	22819	28025	28052	37542	37542					0.02714323240434169
LPSATYLPPN	10	Unmodified	_LPSATYLPPN_					0	0	0			REV__nc|ENSG00000196372|Q8WXK3-2|ASB13	REV__nc|ENSG00000196372|Q8WXK3-2|ASB13	MULTI-MATCH	OvCa9_classI_Rep3	3		2	536.787307	1071.56006	1.0281	0.00055188	-2.191	-0.0011761	-1.1629	-0.00062422	536.7861704057608	132.37	0.54643	131.24	130.99	131.53	-1.1249	0.096153	-0.0022183	NaN	32.812	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10995	+		34048	22819	28025	28052							0.02714323240434169
LPSDGLIGPK	10	Unmodified	_LPSDGLIGPK_					0	0	0			REV__ENSG00000161847|ENST00000617231|RAVER1	REV__ENSG00000161847|ENST00000617231|RAVER1	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.8322448730469	2	498.78985	995.565146	0.24142	0.00012042	-3.5201	-0.0017558	-3.2786	-0.0016353	498.7866946323803	71.787	1.9364	69.28	68.281	70.218	-2.5071					55	36	3	0	0	0	0.026493	1	5884	5884		64.207	0	1	78125	+		34049	20711	28026	28053	37543	37543					0.06718627103043673
LPSDGLIGPK	10	Unmodified	_LPSDGLIGPK_					0	0	0			REV__ENSG00000161847|ENST00000617231|RAVER1	REV__ENSG00000161847|ENST00000617231|RAVER1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	498.78985	995.565146	-1.5351	-0.00076568	-1.6539	-0.00082497	-3.189	-0.0015907	498.78784814512625	72.807	1.7966	69.411	68.569	70.366	-3.3961	0.065625	0.00083978	NaN	64.207	74	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	325640	+		34050	20711	28026	28053							0.06718627103043673
LPSDTRLVL	9	Unmodified	_LPSDTRLVL_					0	0	0		ENSG00000149131|ENST00000278407|SERPING1;nc|ENSG00000149131|P05155-3|SERPING1;nc|ENSG00000149131|P05155-2|SERPING1	ENSG00000149131|ENST00000278407|SERPING1	ENSG00000149131|ENST00000278407|SERPING1	MSMS	OvCa9_classI_Rep2	2	507.302978515625	2	507.303124	1012.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.989	1	96.03	95.53	96.53	-0.95857								0	0	0	0.16747	1	8766	8766		58.23	3.4536	1				34051	5443	28027	28054	37544	37544					0.08590315994376851
LPSDTRLVLL	10	Unmodified	_LPSDTRLVLL_					0	0	0		ENSG00000149131|ENST00000278407|SERPING1;nc|ENSG00000149131|P05155-3|SERPING1;nc|ENSG00000149131|P05155-2|SERPING1	ENSG00000149131|ENST00000278407|SERPING1	ENSG00000149131|ENST00000278407|SERPING1	MULTI-MSMS	OvCa9_classI_Rep2	2	563.8444213867188	2	563.845156	1125.67576	-0.41085	-0.00023166	0.37442	0.00021112	-0.036429	-2.054E-05	563.8451243260417	115.68	0.69202	115.56	115.19	115.89	-0.11777					41	13	4	0	0	0	0.20536	5	11050	11028;11032;11037;11043;11050		93.598	29.39	1	458140			34052	5443	28028	28055	37545;37546;37547;37548;37549	37549					0.11794847091277916
LPSDTRLVLL	10	Unmodified	_LPSDTRLVLL_					0	0	0		ENSG00000149131|ENST00000278407|SERPING1;nc|ENSG00000149131|P05155-3|SERPING1;nc|ENSG00000149131|P05155-2|SERPING1	ENSG00000149131|ENST00000278407|SERPING1	ENSG00000149131|ENST00000278407|SERPING1	MULTI-MSMS	OvCa9_classI_Rep3	3	563.844482421875	2	563.845156	1125.67576	-0.9348	-0.00052708	0.78994	0.00044541	-0.14486	-8.1679E-05	563.8454049954004	116.57	0.84015	115.53	115.14	115.98	-1.0414					46	16	4	0	0	0	0.32141	6	8711	8701;8711;8716;8722;8728;8735		78.264	17.731	1	486550			34053	5443	28028	28055	37550;37551;37552;37553;37554;37555	37551					0.11794847091277916
LPSDTRLVLL	10	Unmodified	_LPSDTRLVLL_					0	0	0		ENSG00000149131|ENST00000278407|SERPING1;nc|ENSG00000149131|P05155-3|SERPING1;nc|ENSG00000149131|P05155-2|SERPING1	ENSG00000149131|ENST00000278407|SERPING1	ENSG00000149131|ENST00000278407|SERPING1	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.8447265625	2	563.845156	1125.67576	1.0466	0.00059012	-1.1993	-0.00067624	-0.15274	-8.6121E-05	563.8442655425283	116.85	0.83615	115.48	115.09	115.93	-1.3645					46	15	4	0	0	0	0.35539	4	10918	10906;10918;10929;10941		74.165	14.047	1	556830			34054	5443	28028	28055	37556;37557;37558;37559	37557					0.11794847091277916
LPSEIEVK	8	Unmodified	_LPSEIEVK_					0	0	0		ENST00000464697.1_1_12:110825679-110841468:-|nuORF;ENST00000550231.1_1_12:110825542-110834223:-|nuORF;nc|ENSG00000196510|Q9UJX3-2|ANAPC7;ANAPC7-PDE11A|1|fusion;ENSG00000196510|ENST00000455511|ANAPC7	ENST00000464697.1_1_12:110825679-110841468:-|nuORF	ENST00000464697.1_1_12:110825679-110841468:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.7460021972656	2	457.7633	913.512048	-1.0053	-0.0004602	-1.8952	-0.00086755	-2.9005	-0.0013277	457.76215988786055	42.765	0.83932	39.758	39.539	40.378	-3.0074					21	15	3	0	0	0	0.028476	1	2038	2038		11.511	0	1	30690			34055	88	28029	28056	37560	37560					0.05183249320384675
LPSFFQPSI	9	Unmodified	_LPSFFQPSI_					0	0	0			REV__ENST00000343348.10_1_5:115779466-115779568:-|nuORF	REV__ENST00000343348.10_1_5:115779466-115779568:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.2799682617188	2	518.279118	1034.54368	0.10054	5.2109E-05	-0.14468	-7.4983E-05	-0.044134	-2.2874E-05	518.2787416146472	83.903	1.0811	81.24	81.022	82.103	-2.6629					48	22	3	0	0	0	0.33652	1	7000	7000		58.782	3.2778	1	477600	+		34056	24668	28030	28057	37561	37561					0.027792420743253388
LPSFHLCSNV	10	Unmodified	_LPSFHLCSNV_					0	0	0			REV__ENST00000257724.7_1_7:114658065-114658206:+|nuORF	REV__ENST00000257724.7_1_7:114658065-114658206:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.296142578125	2	558.778959	1115.54336	2.9225	0.0016331	-0.53019	-0.00029626	2.3924	0.0013368	558.7788043101258	108.09	0.25606	108.09	107.9	108.16	0					6	5	2	0	0	0	0.026734	1	12198	12198		24.519	0	1	344040	+		34057	23904	28031	28058	37562	37562					-0.009785009171991987
LPSFQPIVL	9	Unmodified	_LPSFQPIVL_					0	0	0		ENST00000537345.5_1_1:116931545-116932105:+|nuORF	ENST00000537345.5_1_1:116931545-116932105:+|nuORF	ENST00000537345.5_1_1:116931545-116932105:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	507.3043212890625	2	507.305136	1012.59572	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.34	1	95.962	95.462	96.462	-2.3786								0	0	0	0.043201	1	8738	8738		79.713	2.9384	1				34058	13404	28032	28059	37563	37563					0.08992405488072563
LPSGARVGHR	10	Unmodified	_LPSGARVGHR_					0	0	0		ENSG00000173545|ENST00000308683|ZNF622	ENSG00000173545|ENST00000308683|ZNF622	ENSG00000173545|ENST00000308683|ZNF622	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.3045654296875	2	525.301781	1048.58901	-0.67339	-0.00035373	2.7192	0.0014284	2.0458	0.0010746	525.3030438677297	74.889	1.7859	71.658	71.24	73.026	-3.2308					80	36	3	0	0	0	0.18827	1	5869	5869		96.19	2.995	1	1217400			34059	7387	28033	28060	37564	37564					0.06665905380077675
LPSGFPARRN	10	Unmodified	_LPSGFPARRN_					0	0	0		nc|nan|Q8IXR9-2|C12orf56;ENSG00000185306|ENST00000543942|C12orf56	nc|nan|Q8IXR9-2|C12orf56	nc|nan|Q8IXR9-2|C12orf56	MULTI-SECPEP	OvCa9_classI_Rep4_	4	558.3345947265625	2	557.809439	1113.60433	0.86648	0.00048333	-1.3916	-0.00077626	-0.52515	-0.00029293	557.8079673871183	56.621	1.0647	53.327	52.97	54.035	-3.2944					32	20	3	0	0	0	0.026915	1	3616	3616		44.117	11.304	1	60552			34060	8246	28034	28061	37565	37565					0.052067721772800724
LPSGNFLPF	9	Unmodified	_LPSGNFLPF_					0	0	0		chr2:95597977-95599092|259|14.32|0.08|7.47|+|1|TRIM43,TRIM43|1;chr2:95477645-95478760|254|14.26|0.08|7.53|-|1|TRIM43B,TRIM43B|1	chr2:95597977-95599092|259|14.32|0.08|7.47|+|1|TRIM43,TRIM43|1	chr2:95597977-95599092|259|14.32|0.08|7.47|+|1|TRIM43,TRIM43|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.26763916015625	2	496.26601	990.517468	-0.058999	-2.9279E-05	-0.33126	-0.00016439	-0.39026	-0.00019367	496.2654350559752	59.112	2.1318	55.72	55.15	57.282	-3.392					82	42	5	0	0	0	0.16524	1	3909	3909		82.305	2.3658	1	977160			34061	450	28035	28062	37566	37566					0.021829729028468137
LPSGNFLPF	9	Unmodified	_LPSGNFLPF_					0	0	0		chr2:95597977-95599092|259|14.32|0.08|7.47|+|1|TRIM43,TRIM43|1;chr2:95477645-95478760|254|14.26|0.08|7.53|-|1|TRIM43B,TRIM43B|1	chr2:95597977-95599092|259|14.32|0.08|7.47|+|1|TRIM43,TRIM43|1	chr2:95597977-95599092|259|14.32|0.08|7.47|+|1|TRIM43,TRIM43|1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	496.26601	990.517468	-0.33591	-0.0001667	-0.16137	-8.0084E-05	-0.49729	-0.00024679	496.2655569725021	58.515	2.304	55.735	55.134	57.438	-2.7801	0.0078648	7.6648E-05	NaN	82.305	71	44	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170590			34062	450	28035	28062							0.021829729028468137
LPSGQELPII	10	Unmodified	_LPSGQELPII_					0	0	0			REV__ENSG00000160753|ENST00000368352|RUSC1	REV__ENSG00000160753|ENST00000368352|RUSC1	MULTI-MSMS	OvCa9_classI_Rep3	3	533.8093872070312	2	533.810782	1065.60701	-0.10269	-5.4819E-05	-3.6551	-0.0019511	-3.7578	-0.0020059	533.8091851455895	95.731	0.9399	93.903	93.531	94.471	-1.8286					49	18	5	0	0	0	0.40664	1	6264	6264		67.494	2.0283	1	767370	+		34063	20671	28036	28063	37567	37567					0.07683182791583931
LPSILLGLQF	10	Unmodified	_LPSILLGLQF_					0	0	0		ENST00000457282.5_1_X:153200741-153205574:-|nuORF	ENST00000457282.5_1_X:153200741-153205574:-|nuORF	ENST00000457282.5_1_X:153200741-153205574:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	550.8397827148438	2	550.839342	1099.66413	-0.98826	-0.00054437	1.534	0.00084497	0.5457	0.00030059	550.8399864595561	26.417	0.30032	26.417	26.292	26.593	0					13	5	3	0	0	0	0.64063	1	690	690		37.159	1.5408	1	75974			34064	12120	28037	28064	37568	37568					0.11828650067946
LPSIMVDL	8	Oxidation (M)	_LPSIM(Oxidation (M))VDL_		LPSIM(1)VDL		LPSIM(58)VDL	0	0	1		tr|A0A553SLM6|A0A553SLM6_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_20910PE=3SV=1	tr|A0A553SLM6|A0A553SLM6_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_20910PE=3SV=1	tr|A0A553SLM6|A0A553SLM6_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_20910PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	452.24859619140625	2	452.246429	902.478305	0.85495	0.00038665	3.3572	0.0015183	4.2121	0.0019049	452.2477760980005	52.531	1.6304	49.718	49.295	50.926	-2.8129					82	32	4	0	0	0	0.62934	1	3513	3513		57.811	6.4758	1	535280			34065	33742	28038	28065	37569	37569		745			0.023165045569840004
LPSIMVDL	8	Oxidation (M)	_LPSIM(Oxidation (M))VDL_		LPSIM(1)VDL		LPSIM(110)VDL	0	0	1		tr|A0A553SLM6|A0A553SLM6_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_20910PE=3SV=1	tr|A0A553SLM6|A0A553SLM6_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_20910PE=3SV=1	tr|A0A553SLM6|A0A553SLM6_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_20910PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	452.24932861328125	2	452.246429	902.478305	0.15665	7.0842E-05	3.7604	0.0017006	3.917	0.0017715	452.2480983931767	52.736	1.7702	49.528	49.145	50.915	-3.208					96	34	4	0	0	0	0.31087	2	3175	3175;3227		105.27	9.2211	1	3132400			34066	33742	28038	28065	37570;37571	37570		745			0.023165045569840004
LPSKLQKGIDI	11	Unmodified	_LPSKLQKGIDI_					0	0	0			REV__ENST00000497403.5_1_2:10101229-10104576:+|nuORF	REV__ENST00000497403.5_1_2:10101229-10104576:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3697509765625	2	606.371538	1210.72852	-3.14	-0.001904	-0.05994	-3.6346E-05	-3.1999	-0.0019404	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.72521	1	15107	15107		12.812	1.3007	1	257720	+		34067	26777	28039	28066	37572	37572					0.13158805154080255
LPSKVKKSV	9	Unmodified	_LPSKVKKSV_					0	0	0		tr|A0A7D7A364|A0A7D7A364_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11475PE=4SV=1	tr|A0A7D7A364|A0A7D7A364_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11475PE=4SV=1	tr|A0A7D7A364|A0A7D7A364_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11475PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.74462890625	2	493.32386	984.633166	2.1501	0.0010607	-0.67333	-0.00033217	1.4768	0.00072852	493.32381851789773	113.2	0.27282	113.2	113.02	113.29	0					8	5	2	0	0	0	0.027462	1	12889	12889		19.997	13.261	1	45661			34068	36105	28040	28067	37573	37573					0.14023496753702602
LPSLFHLRLL	10	Unmodified	_LPSLFHLRLL_					0	0	0		ENSG00000101438|ENST00000217420|SLC32A1	ENSG00000101438|ENST00000217420|SLC32A1	ENSG00000101438|ENST00000217420|SLC32A1	MULTI-MSMS	OvCa9_classI_Rep2	2	403.58697509765625	3	403.588648	1207.74411	-0.025043	-1.0107E-05	-3.291	-0.0013282	-3.316	-0.0013383	403.58728537830933	61.847	1.6847	59.087	58.62	60.305	-2.7593					89	32	4	0	0	0	0.69073	1	4633	4633		31.53	1.2121	1	569970			34069	2176	28041	28068	37574	37574					0.14855136461778784
LPSLFLNSL	9	Unmodified	_LPSLFLNSL_					0	0	0		ENSG00000140836|ENST00000268489|ZFHX3;ZFHX3|p.N319Kfs*11|1|0.1|ENSG00000140836|chr16:72959189-72959190|-/GCTTCCTCCCCTTCCATTCGAATGCCAC|frameshift_variant;ZFHX3|p.N938Sfs*20|1|0.08|ENSG00000140836|chr16:72950848-72950872|TGGAAGAGCTTCAGCGACGGGTCGT/-|frameshift_variant;ZFHX3|p.E1552Rfs*5|1|0.21|ENSG00000140836|chr16:72798014-72798029|TTGAGTGAAAGATTCC/-|frameshift_variant	ENSG00000140836|ENST00000268489|ZFHX3	ENSG00000140836|ENST00000268489|ZFHX3	MULTI-MSMS	OvCa9_classI_Rep2	2	502.293212890625	2	502.294768	1002.57498	-1.2673	-0.00063655	1.0716	0.00053825	-0.1957	-9.8298E-05	502.2950498761891	121.49	0.89074	121.29	121.05	121.94	-0.19719					39	17	3	0	0	0	0.38529	1	11755	11755		53.351	2.1588	1	73003			34070	4876	28042	28069	37575	37575					0.07379815108413368
LPSLGLEQPL	10	Unmodified	_LPSLGLEQPL_					0	0	0		nc|ENSG00000144560|Q14135-5|VGLL4;nc|ENSG00000144560|Q14135-6|VGLL4;nc|ENSG00000144560|Q14135-2|VGLL4;nc|ENSG00000144560|Q14135|VGLL4;nc|ENSG00000144560|Q14135-4|VGLL4;ENSG00000144560|ENST00000430365|VGLL4	nc|ENSG00000144560|Q14135-5|VGLL4	nc|ENSG00000144560|Q14135-5|VGLL4	MULTI-MSMS	OvCa9_classI_Rep3	3	533.8113403320312	2	533.810782	1065.60701	-0.10269	-5.4819E-05	-3.6551	-0.0019511	-3.7578	-0.0020059	533.8091851455895	95.731	0.9399	93.903	93.531	94.471	-1.8286					49	18	5	0	0	0	0.40664	1	6271	6271		67.494	3.2864	1	767370			34071	5159	28043	28070	37576	37576					0.07683182791561194
LPSLGLEQPL	10	Unmodified	_LPSLGLEQPL_					0	0	0		nc|ENSG00000144560|Q14135-5|VGLL4;nc|ENSG00000144560|Q14135-6|VGLL4;nc|ENSG00000144560|Q14135-2|VGLL4;nc|ENSG00000144560|Q14135|VGLL4;nc|ENSG00000144560|Q14135-4|VGLL4;ENSG00000144560|ENST00000430365|VGLL4	nc|ENSG00000144560|Q14135-5|VGLL4	nc|ENSG00000144560|Q14135-5|VGLL4	MSMS	OvCa9_classI_Rep4_	4	533.810302734375	2	533.810782	1065.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.387	1	93.961	93.461	94.461	-2.4256								0	0	0	0.088195	1	8505	8505		98.582	15.832	1				34072	5159	28043	28070	37577	37577					0.07683182791561194
LPSLPLEPL	9	Unmodified	_LPSLPLEPL_					0	0	0			REV__ENSG00000186185|ENST00000593135|KIF18B	REV__ENSG00000186185|ENST00000593135|KIF18B	MULTI-MSMS	OvCa99_classI_Rep5	1	489.7995910644531	2	489.797143	977.579734	0.35762	0.00017516	4.1576	0.0020364	4.5152	0.0022115	489.79900077673824	160.64	3.1469	160.64	159.38	162.53	0					149	62	3	0	0	0	0.61208	1	18777	18777		30.504	0	1	288360	+		34073	22563	28044	28071	37578	37578					0.09004699251181592
LPSLQGALEP	10	Unmodified	_LPSLQGALEP_					0	0	0		ENST00000164133.6_1_11:64700298-64700679:+|nuORF	ENST00000164133.6_1_11:64700298-64700679:+|nuORF	ENST00000164133.6_1_11:64700298-64700679:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	512.787353515625	2	512.787307	1023.56006	0.17929	9.1937E-05	-0.73412	-0.00037645	-0.55483	-0.00028451	512.7868569035359	108.11	1.6289	107.89	107.53	109.16	-0.22498					90	32	4	0	0	0	0.42962	1	10115	10115		64.207	5.4253	1	274530			34074	9637	28045	28072	37579	37579					0.0492232324043016
LPSLRLRPA	9	Unmodified	_LPSLRLRPA_					0	0	0			REV__ENST00000603544.5_2_14:35591973-35592316:+|nuORF	REV__ENST00000603544.5_2_14:35591973-35592316:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	512.8138427734375	2	511.827101	1021.63965	-1.4825	-0.0007588	1.6045	0.00082124	0.12199	6.2437E-05	511.82789344211113	63.427	1.3653	60.683	60.266	61.632	-2.7444					41	19	3	0	0	0	0.027462	1	4819	4819		37.159	9.2769	1	149620	+		34075	28050	28046	28073	37580	37580					0.12969434705075855
LPSLRLRPA	9	Unmodified	_LPSLRLRPA_					0	0	0			REV__ENST00000603544.5_2_14:35591973-35592316:+|nuORF	REV__ENST00000603544.5_2_14:35591973-35592316:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	511.827101	1021.63965	0.013057	6.683E-06	-0.049736	-2.5456E-05	-0.036679	-1.8773E-05	511.8271661796961	64.269	1.1655	60.794	60.539	61.705	-3.475	0.055922	-0.0010842	NaN	37.159	41	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	315660	+		34076	28050	28046	28073							0.12969434705075855
LPSLSPPLP	9	Unmodified	_LPSLSPPLP_					0	0	0		ENSG00000241241|ENST00000440582|KRTAP4-16	ENSG00000241241|ENST00000440582|KRTAP4-16	ENSG00000241241|ENST00000440582|KRTAP4-16	MULTI-MSMS	OvCa9_classI_Rep4_	4	460.7745056152344	2	460.776211	919.537869	-0.31989	-0.0001474	-2.7044	-0.0012461	-3.0243	-0.0013935	460.7747904442252	38.902	1.5392	35.976	35.651	37.19	-2.9264					68	30	4	0	0	0	0.61208	1	1583	1583		30.504	0	1	471040			34077	9350	28047	28074	37581	37581					0.07488143562670757
LPSLVSLRPS	10	Unmodified	_LPSLVSLRPS_					0	0	0		ENST00000309422.6_2_11:64006001-64006139:+|nuORF	ENST00000309422.6_2_11:64006001-64006139:+|nuORF	ENST00000309422.6_2_11:64006001-64006139:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	534.82373046875	2	534.824224	1067.63389	0.78501	0.00041984	-1.4246	-0.00076192	-0.63961	-0.00034208	534.8233903057377	88.317	1.1824	86.949	86.592	87.774	-1.3676					73	23	4	0	0	0	0.28845	2	7741	7735;7741		82.241	15.811	1	512270			34078	10273	28048	28075	37582;37583	37583					0.10278291402732975
LPSLVSLRPS	10	Unmodified	_LPSLVSLRPS_					0	0	0		ENST00000309422.6_2_11:64006001-64006139:+|nuORF	ENST00000309422.6_2_11:64006001-64006139:+|nuORF	ENST00000309422.6_2_11:64006001-64006139:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	534.824951171875	2	534.824224	1067.63389	0.37756	0.00020193	-0.89779	-0.00048016	-0.52023	-0.00027823	534.8236683996221	89.1	1.399	86.969	86.607	88.006	-2.1309					95	27	4	0	0	0	0.35465	2	5461	5461;5467		74.255	10.721	1	829240			34079	10273	28048	28075	37584;37585	37584					0.10278291402732975
LPSLVSLRPS	10	Unmodified	_LPSLVSLRPS_					0	0	0		ENST00000309422.6_2_11:64006001-64006139:+|nuORF	ENST00000309422.6_2_11:64006001-64006139:+|nuORF	ENST00000309422.6_2_11:64006001-64006139:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.8252563476562	2	534.824224	1067.63389	-0.46833	-0.00025048	-0.028016	-1.4983E-05	-0.49635	-0.00026546	534.8241284947087	89.464	2.2193	86.889	86.559	88.779	-2.575					109	43	4	0	0	0	0.42962	1	7664	7664		64.207	3.2353	1	706790			34080	10273	28048	28075	37586	37586					0.10278291402732975
LPSPASLQLA	10	Unmodified	_LPSPASLQLA_					0	0	0		ENSG00000203867|ENST00000369519|RBM20	ENSG00000203867|ENST00000369519|RBM20	ENSG00000203867|ENST00000369519|RBM20	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.7890930175781	2	498.78985	995.565146	-1.7686	-0.00088217	1.6167	0.0008064	-0.1519	-7.5765E-05	498.7906154337472	119.3	1.4059	117.96	117.42	118.82	-1.3444					43	26	2	0	0	0	0.026659	1	11181	11181		54.776	24.935	1	96098			34081	8938	28049	28076	37587	37587					0.06718627103055042
LPSPLRREKL	10	Unmodified	_LPSPLRREKL_					0	0	0		nc|ENSG00000100796|Q6IN85-2|PPP4R3A;ENSG00000100796|ENST00000554943|PPP4R3A;nc|ENSG00000100796|Q6IN85-5|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	nc|ENSG00000100796|Q6IN85-2|PPP4R3A	MULTI-MSMS	OvCa9_classI_Rep2	2	403.58721923828125	3	403.587307	1207.74009	-0.025043	-1.0107E-05	0.031474	1.2703E-05	0.0064315	2.5957E-06	403.58728537830933	61.847	1.6847	59.087	58.62	60.305	-2.7593					89	32	4	0	0	0	0.61634	1	4608	4608		40.058	10.888	1	569970			34082	2105	28050	28077	37588	37588					0.14453046968083072
LPSPQLLIL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LPSPQLLIL_					1	0	0		ENST00000421025.3_1_7:63727092-63727275:+|nuORF	ENST00000421025.3_1_7:63727092-63727275:+|nuORF	ENST00000421025.3_1_7:63727092-63727275:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	518.324462890625	2	518.326068	1034.63758	-0.20131	-0.00010434	-3.1834	-0.0016501	-3.3847	-0.0017544	518.3244380054447	69.411	2.6973	66.791	66.416	69.113	-2.6203					144	52	4	0	0	0	0.42676	1	5511	5511		49.442	10.635	1	2532100			34083	11678	28051	28078	37589	37589					0.1216496117663155
LPSPQSLKGKI	11	Unmodified	_LPSPQSLKGKI_					0	0	0		PLCH1|p.R591Lfs*6|1|0.11|ENSG00000114805|chr3:155497389-155497408|GCTTCATGGTTTTCCTTCGG/-|frameshift_variant;nc|ENSG00000114805|Q4KWH8-3|PLCH1;nc|ENSG00000114805|Q4KWH8-4|PLCH1;nc|ENSG00000114805|Q4KWH8-2|PLCH1;ENSG00000114805|ENST00000460012|PLCH1;nc|ENSG00000114805|Q4KWH8|PLCH1	PLCH1|p.R591Lfs*6|1|0.11|ENSG00000114805|chr3:155497389-155497408|GCTTCATGGTTTTCCTTCGG/-|frameshift_variant	PLCH1|p.R591Lfs*6|1|0.11|ENSG00000114805|chr3:155497389-155497408|GCTTCATGGTTTTCCTTCGG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3568725585938	2	584.358431	1166.70231	-2.312	-0.0013511	-1.149	-0.00067141	-3.461	-0.0020225	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.65063	1	14609	14609		40.058	7.2458	1	180810			34084	3043	28052	28079	37590	37590					0.1256253598260173
LPSPQSLKGKI	11	Unmodified	_LPSPQSLKGKI_					0	0	0		PLCH1|p.R591Lfs*6|1|0.11|ENSG00000114805|chr3:155497389-155497408|GCTTCATGGTTTTCCTTCGG/-|frameshift_variant;nc|ENSG00000114805|Q4KWH8-3|PLCH1;nc|ENSG00000114805|Q4KWH8-4|PLCH1;nc|ENSG00000114805|Q4KWH8-2|PLCH1;ENSG00000114805|ENST00000460012|PLCH1;nc|ENSG00000114805|Q4KWH8|PLCH1	PLCH1|p.R591Lfs*6|1|0.11|ENSG00000114805|chr3:155497389-155497408|GCTTCATGGTTTTCCTTCGG/-|frameshift_variant	PLCH1|p.R591Lfs*6|1|0.11|ENSG00000114805|chr3:155497389-155497408|GCTTCATGGTTTTCCTTCGG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	584.3566284179688	2	584.358431	1166.70231	-4.6254	-0.0027029	1.1397	0.00066599	-3.4857	-0.0020369	584.3589865391973	145.25	4.5766	144.28	142.9	147.48	-0.97299					233	91	4	0	0	0	0.70761	1	12182	12182		27.047	1.4733	1	156220			34085	3043	28052	28079	37591	37591					0.1256253598260173
LPSPSARPLV	10	Unmodified	_LPSPSARPLV_					0	0	0			REV__ENST00000257829.7_1_11:34127254-34129795:+|nuORF	REV__ENST00000257829.7_1_11:34127254-34129795:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	518.8115234375	2	518.811116	1035.60768	0.088256	4.5788E-05	-0.5995	-0.00031103	-0.51125	-0.00026524	518.8107342114864	98.351	1.6273	96.591	95.722	97.349	-1.7595					39	20	2	0	0	0	0.26627	2	6565	6565;6571		84.916	0	1	724000	+		34086	23906	28053	28080	37592;37593	37592					0.09130022231261137
LPSPSARPLV	10	Unmodified	_LPSPSARPLV_					0	0	0			REV__ENST00000257829.7_1_11:34127254-34129795:+|nuORF	REV__ENST00000257829.7_1_11:34127254-34129795:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.8121948242188	2	518.811116	1035.60768	-0.61865	-0.00032096	0.22979	0.00011922	-0.38886	-0.00020175	518.8111243295159	98.94	1.391	96.614	96.177	97.568	-2.3253					63	20	4	0	0	0	0.41408	3	8811	8811;8825;8837		66.429	15.094	1	598110	+		34087	23906	28053	28080	37594;37595;37596	37594					0.09130022231261137
LPSPTTAGPLL	11	Unmodified	_LPSPTTAGPLL_					0	0	0		ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	OvCa9_classI_Rep3	3	533.8087768554688	2	533.810782	1065.60701	-0.10269	-5.4819E-05	-3.6551	-0.0019511	-3.7578	-0.0020059	533.8091851455895	95.731	0.9399	93.903	93.531	94.471	-1.8286					49	18	5	0	0	0	0.56722	1	6258	6258		47.657	3.2801	1	767370			34088	7920	28054	28081	37597	37597					0.07683182791583931
LPSQKTASL	9	Unmodified	_LPSQKTASL_					0	0	0		nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.7747802734375	2	472.7742	943.533846	0.54865	0.00025939	-0.33479	-0.00015828	0.21386	0.00010111	472.7738697966431	58.465	1.1991	55.073	54.852	56.051	-3.392					52	23	3	0	0	0	0.14855	1	3855	3855		85.161	2.9203	1	328440			34089	15128	28055	28082	37598	37598					0.059820540689429436
LPSQKTASL	9	Unmodified	_LPSQKTASL_					0	0	0		nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	472.7742	943.533846	-0.61891	-0.00029261	1.5835	0.00074863	0.96458	0.00045603	472.77477720176194	57.905	0.95318	55.113	54.922	55.876	-2.792	0.020269	0.0011556	NaN	85.161	32	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53504			34090	15128	28055	28082							0.059820540689429436
LPSRKLVAL	9	Unmodified	_LPSRKLVAL_					0	0	0		ENSG00000128789|ENST00000317615|PSMG2;nc|ENSG00000128789|Q969U7-2|PSMG2	ENSG00000128789|ENST00000317615|PSMG2	ENSG00000128789|ENST00000317615|PSMG2	MULTI-MSMS	OvCa9_classI_Rep2	2	498.83197021484375	2	498.831852	995.649151	-0.12378	-6.1747E-05	-0.5846	-0.00029162	-0.70838	-0.00035336	498.8315084055956	72.541	2.8193	70.141	69.802	72.621	-2.3999					123	53	5	0	0	0	0.22621	2	5874	5874;5879		71.877	11.474	1	1514600			34091	3902	28056	28083	37599;37600	37599					0.15115202990614307
LPSRKLVAL	9	Unmodified	_LPSRKLVAL_					0	0	0		ENSG00000128789|ENST00000317615|PSMG2;nc|ENSG00000128789|Q969U7-2|PSMG2	ENSG00000128789|ENST00000317615|PSMG2	ENSG00000128789|ENST00000317615|PSMG2	MULTI-MSMS	OvCa9_classI_Rep3	3	498.83184814453125	2	498.831852	995.649151	-0.21545	-0.00010747	-0.44471	-0.00022183	-0.66015	-0.00032931	498.8316195195434	72.795	2.813	70.307	69.884	72.697	-2.4873					132	56	5	0	0	0	0.11471	8	3529	3497;3503;3509;3516;3529;3536;3542;3549		93.195	27.392	1	2522500			34092	3902	28056	28083	37601;37602;37603;37604;37605;37606;37607;37608	37605					0.15115202990614307
LPSRLSHVQ	9	Unmodified	_LPSRLSHVQ_					0	0	0			REV__ENST00000407780.7_1_21:45646280-45646613:-|nuORF	REV__ENST00000407780.7_1_21:45646280-45646613:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	518.79833984375	2	518.79854	1035.58253	-0.0093009	-4.8253E-06	-0.59475	-0.00030855	-0.60405	-0.00031338	518.7981441335678	45.913	0.83417	45.913	45.667	46.501	0					49	18	4	0	0	0	0.28934	2	3200	3200;3221		64.207	5.4253	1	3737600	+		34093	25454	28057	28084	37609;37610	37609					0.06615967428683689
LPSRLSHVQ	9	Unmodified	_LPSRLSHVQ_					0	0	0			REV__ENST00000407780.7_1_21:45646280-45646613:-|nuORF	REV__ENST00000407780.7_1_21:45646280-45646613:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	518.79854	1035.58253	-0.0093009	-4.8253E-06	-0.59475	-0.00030855	-0.60405	-0.00031338	518.7981441335678	45.913	0.83417	45.913	45.667	46.501	0	0	0	NaN	64.207	49	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3737600	+		34094	25454	28057	28084							0.06615967428683689
LPSRSVLSV	9	Unmodified	_LPSRSVLSV_					0	0	0		ENSG00000120063|ENST00000439174|GNA13	ENSG00000120063|ENST00000439174|GNA13	ENSG00000120063|ENST00000439174|GNA13	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.2911376953125	2	479.290017	956.565481	1.4407	0.00069049	-1.2686	-0.00060801	0.17208	8.2475E-05	479.28923689545314	85.848	1.2373	83.202	82.945	84.182	-2.6463					59	24	5	0	0	0	0.14998	1	7239	7239		84.916	10.941	1	316190			34095	3415	28058	28085	37611	37611					0.08546046822903008
LPSRVARLL	9	Unmodified	_LPSRVARLL_					0	0	0		ENST00000482643.1_1_9:99136327-99145916:-|nuORF;nc|ENSG00000130958|Q76EJ3-2|SLC35D2;ENSG00000130958|ENST00000253270|SLC35D2	ENST00000482643.1_1_9:99136327-99145916:-|nuORF	ENST00000482643.1_1_9:99136327-99145916:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	512.8363647460938	2	512.834926	1023.6553	-0.33027	-0.00016937	0.00014341	7.3545E-08	-0.33012	-0.0001693	512.8347899338833	89.789	1.9382	87.709	87.337	89.275	-2.0805					86	37	4	0	0	0	0.35444	1	5534	5534		56.721	1.2168	1	487290			34096	4030	28059	28086	37612	37612					0.14441721222135584
LPSRVARLL	9	Unmodified	_LPSRVARLL_					0	0	0		ENST00000482643.1_1_9:99136327-99145916:-|nuORF;nc|ENSG00000130958|Q76EJ3-2|SLC35D2;ENSG00000130958|ENST00000253270|SLC35D2	ENST00000482643.1_1_9:99136327-99145916:-|nuORF	ENST00000482643.1_1_9:99136327-99145916:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.8351440429688	2	512.834926	1023.6553	0.10768	5.5222E-05	-0.36696	-0.00018819	-0.25928	-0.00013297	512.8346053479938	90.268	1.681	87.693	87.248	88.929	-2.575					80	32	3	0	0	0	0.35444	1	7760	7760		56.721	5.3856	1	345810			34097	4030	28059	28086	37613	37613					0.14441721222135584
LPSSGRSSL	9	Unmodified	_LPSSGRSSL_					0	0	0		ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	ENSG00000151929|ENST00000369085|BAG3	MULTI-MSMS	OvCa9_classI_Rep4_	4	452.2491455078125	2	452.248349	902.482145	0.15664	7.0842E-05	-0.48488	-0.00021929	-0.32824	-0.00014844	452.2480983931767	52.736	1.7702	49.528	49.145	50.915	-3.208					96	34	4	0	0	0	0.18887	1	3188	3188		78.264	3.7472	1	3132400			34098	5596	28060	28087	37614	37614					0.027003103750416813
LPSSIRTKAL	10	Unmodified	_LPSSIRTKAL_					0	0	0		nc|ENSG00000100227|Q9BY77-2|POLDIP3;ENSG00000100227|ENST00000252115|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	MULTI-MSMS	OvCa9_classI_Rep2	2	543.3375854492188	2	543.337498	1084.66044	-2.311	-0.0012556	1.9329	0.0010502	-0.37808	-0.00020543	543.3384008994826	62.758	1.5185	60.014	59.695	61.214	-2.7444					77	28	4	0	0	0	0.26424	2	4722	4717;4722		85.161	14.057	1	367110			34099	2030	28061	28088	37615;37616	37616					0.12149980294088891
LPSSIRTKAL	10	Unmodified	_LPSSIRTKAL_					0	0	0		nc|ENSG00000100227|Q9BY77-2|POLDIP3;ENSG00000100227|ENST00000252115|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	nc|ENSG00000100227|Q9BY77-2|POLDIP3	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.3389282226562	2	543.337498	1084.66044	-0.77662	-0.00042197	0.533	0.0002896	-0.24362	-0.00013237	543.3376735757383	63.699	1.3069	60.224	59.964	61.271	-3.475					58	26	3	0	0	0	0.15355	2	4498	4487;4498		101.46	32.673	1	554500			34100	2030	28061	28088	37617;37618	37618					0.12149980294088891
LPSSPPIRIA	10	Unmodified	_LPSSPPIRIA_					0	0	0			REV__ENSG00000049769|ENST00000055335|PPP1R3F	REV__ENSG00000049769|ENST00000055335|PPP1R3F	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.8197021484375	2	525.818941	1049.62333	-0.89486	-0.00047053	0.16362	8.6035E-05	-0.73124	-0.0003845	525.8188740030467	94.503	1.5479	92.035	91.714	93.262	-2.4685					63	30	4	0	0	0	0.49558	1	8295	8295		54.776	1.8396	1	733180	+		34101	16680	28062	28089	37619	37619					0.10050308748327552
LPSSPVLPKE	10	Unmodified	_LPSSPVLPKE_					0	0	0		ENST00000220597.4_1_8:81888157-81888412:-|nuORF	ENST00000220597.4_1_8:81888157-81888412:-|nuORF	ENST00000220597.4_1_8:81888157-81888412:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	533.812744140625	2	533.810782	1065.60701	-0.10269	-5.4819E-05	-3.6551	-0.0019511	-3.7578	-0.0020059	533.8091851455895	95.731	0.9399	93.903	93.531	94.471	-1.8286					49	18	5	0	0	0	0.32926	1	6278	6278		77.318	0.54344	1	767370			34102	9687	28063	28090	37620	37620					0.07683182791561194
LPSSRGSLS	9	Unmodified	_LPSSRGSLS_					0	0	0		ENST00000336505.10_1_9:127757231-127762172:-|nuORF	ENST00000336505.10_1_9:127757231-127762172:-|nuORF	ENST00000336505.10_1_9:127757231-127762172:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	452.24786376953125	2	452.248349	902.482145	0.85495	0.00038665	-0.8881	-0.00040164	-0.033151	-1.4993E-05	452.2477760980005	52.531	1.6304	49.718	49.295	50.926	-2.8129					82	32	4	0	0	0	0.14998	1	3508	3508		84.916	9.8722	1	535280			34103	10511	28064	28091	37621	37621					0.027003103750644186
LPSSRGSLS	9	Unmodified	_LPSSRGSLS_					0	0	0		ENST00000336505.10_1_9:127757231-127762172:-|nuORF	ENST00000336505.10_1_9:127757231-127762172:-|nuORF	ENST00000336505.10_1_9:127757231-127762172:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	452.248349	902.482145	-0.53081	-0.00024006	0.6657	0.00030106	0.13489	6.1005E-05	452.2486029081542	50.052	0.43157	50.052	49.856	50.288	0	0.28585	0.0011424	NaN	84.916	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	525590			34104	10511	28064	28091							0.027003103750644186
LPSSRIEVL	9	Unmodified	_LPSSRIEVL_					0	0	0		ENSG00000148429|ENST00000609104|USP6NL;nc|ENSG00000148429|Q92738-2|USP6NL	ENSG00000148429|ENST00000609104|USP6NL	ENSG00000148429|ENST00000609104|USP6NL	MSMS	OvCa9_classI_Rep2	2	507.3030700683594	2	507.303124	1012.5917	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.939	1	95.981	95.481	96.481	-0.95857								0	0	0	0.11106	1	8760	8760		69.628	2.134	1				34105	5412	28065	28092	37622	37622					0.08590315994376851
LPSSRRAAR	9	Unmodified	_LPSSRRAAR_					0	0	0			REV__ENST00000250916.5_1_19:1854033-1854234:-|nuORF	REV__ENST00000250916.5_1_19:1854033-1854234:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	507.3033142089844	2	507.301781	1012.58901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.24	1	95.861	95.361	96.361	-2.3786								0	0	0	0.036084	1	8726	8726		84.916	8.1414	1		+		34106	23860	28066	28093	37623	37623					0.08321905380080352
LPSSRVASS	9	Unmodified	_LPSSRVASS_					0	0	0			REV__ENST00000328070.10_1_19:57134131-57134404:+|nuORF	REV__ENST00000328070.10_1_19:57134131-57134404:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	452.2485046386719	2	452.248349	902.482145	0.85495	0.00038665	-0.8881	-0.00040164	-0.033151	-1.4993E-05	452.2477760980005	52.531	1.6304	49.718	49.295	50.926	-2.8129					82	32	4	0	0	0	0.28934	1	3520	3520		64.207	3.2353	1	535280	+		34107	24506	28067	28094	37624	37624					0.0270031037505305
LPSSSKER	8	Unmodified	_LPSSSKER_					0	0	0			REV__ENSG00000155754|ENST00000439140|C2CD6	REV__ENSG00000155754|ENST00000439140|C2CD6	MULTI-MSMS	OvCa9_classI_Rep2	2	452.24810791015625	2	452.248349	902.482145	0.85495	0.00038665	-0.8881	-0.00040164	-0.033151	-1.4993E-05	452.2477760980005	52.531	1.6304	49.718	49.295	50.926	-2.8129					82	32	4	0	0	0	0.57734	1	3501	3501		68.787	0	1	535280	+		34108	20439	28068	28095	37625	37625					0.0270031037505305
LPSSSKER	8	Unmodified	_LPSSSKER_					0	0	0			REV__ENSG00000155754|ENST00000439140|C2CD6	REV__ENSG00000155754|ENST00000439140|C2CD6	MULTI-MSMS	OvCa9_classI_Rep4_	4	452.2498474121094	2	452.248349	902.482145	0.15664	7.0842E-05	-0.48488	-0.00021929	-0.32824	-0.00014844	452.2480983931767	52.736	1.7702	49.528	49.145	50.915	-3.208					96	34	4	0	0	0	0.36941	2	3164	3164;3201		94.006	0	1	3132400	+		34109	20439	28068	28095	37626;37627	37626					0.0270031037505305
LPSSSQLLPKP	11	Unmodified	_LPSSSQLLPKP_					0	0	0		ENST00000308436.11_1_11:62343181-62343496:-|nuORF	ENST00000308436.11_1_11:62343181-62343496:-|nuORF	ENST00000308436.11_1_11:62343181-62343496:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	584.8345336914062	2	583.842613	1165.67067	-1.0305	-0.00060165	-0.30964	-0.00018078	-1.3401	-0.00078243	583.8431043165613	110.38	1.1557	109.24	108.45	109.61	-1.1444					26	21	2	0	0	0	0.025594	1	8008	8008		27.047	0	1	7406.6			34110	10266	28069	28096	37628	37628					0.0944654322865972
LPSTFYID	8	Unmodified	_LPSTFYID_					0	0	0			REV__ENSG00000197563|ENST00000640252|PIGN	REV__ENSG00000197563|ENST00000640252|PIGN	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.9348449707031	2	478.242201	954.469849	-0.59849	-0.00028622	-2.804	-0.001341	-3.4025	-0.0016272	478.2406387469991	69.517	1.4002	66.896	66.416	67.816	-2.6203					48	27	4	0	0	0	0.028476	1	5621	5621		31.955	0	1	71303	+		34111	22935	28070	28097	37629	37629					-0.009207260880089052
LPSTPGEEKP	10	Unmodified	_LPSTPGEEKP_					0	0	0			REV__ENST00000322224.8_1_4:682967-683156:-|nuORF	REV__ENST00000322224.8_1_4:682967-683156:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.808837890625	2	527.774396	1053.53424	-0.48701	-0.00025703	4.1298	0.0021796	3.6428	0.0019226	528.2776613498229	42.68	0.64468	42.68	42.412	43.057	0					35	14	4	0	0	0	0.027088	1	2736	2736		26.693	10.22	1	248570	+		34112	24457	28071	28098	37630	37630					0.00961428998152769
LPSTYLPI	8	Unmodified	_LPSTYLPI_					0	0	0		ENSG00000118985|ENST00000237853|ELL2	ENSG00000118985|ENST00000237853|ELL2	ENSG00000118985|ENST00000237853|ELL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.2498474121094	2	452.262936	902.51132	0.16016	7.2433E-05	-3.5708	-0.0016149	-3.4106	-0.0015425	452.2618630060886	52.789	0.44565	49.581	49.349	49.795	-3.208					21	8	4	0	0	0	0.028476	1	3164	3164		92.191	20.813	1	16933			34113	3336	28072	28099	37631	37631					0.056164546713375785
LPSVLVEV	8	Unmodified	_LPSVLVEV_					0	0	0		ENST00000222553.7_1_7:105894868-105894907:-|nuORF	ENST00000222553.7_1_7:105894868-105894907:-|nuORF	ENST00000222553.7_1_7:105894868-105894907:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	428.2380065917969	2	428.262936	854.51132	-0.27444	-0.00011753	-4.336	-0.001857	-4.6105	-0.0019745	428.26139633194464	41.397	0.65752	41.397	41.24	41.897	0					18	14	2	0	0	0	0.028476	1	2612	2612		19.36	0	1	154600			34114	9697	28073	28100	37632	37632					0.07824454671322201
LPSVPGRSL	9	Unmodified	_LPSVPGRSL_					0	0	0			REV__ENSG00000174276|ENST00000310597|ZNHIT2	REV__ENSG00000174276|ENST00000310597|ZNHIT2	MULTI-MSMS	OvCa9_classI_Rep3	3	463.2782287597656	2	463.276909	924.539266	-0.58518	-0.0002711	0.43027	0.00019933	-0.15492	-7.1769E-05	463.27703196327946	74.974	2.0641	72.564	72.192	74.256	-2.4106					88	40	4	0	0	0	0.37135	1	3770	3770		54.776	5.3348	1	616420	+		34115	21822	28074	28101	37633	37633					0.07397777651419801
LPSVVGQQKL	10	Unmodified	_LPSVVGQQKL_					0	0	0		ENST00000510904.5_1_1:249138767-249141265:+|nuORF	ENST00000510904.5_1_1:249138767-249141265:+|nuORF	ENST00000510904.5_1_1:249138767-249141265:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	534.8235473632812	2	534.824224	1067.63389	0.78501	0.00041984	-1.4246	-0.00076192	-0.63961	-0.00034208	534.8233903057377	88.317	1.1824	86.949	86.592	87.774	-1.3676					73	23	4	0	0	0	0.42962	1	7753	7753		64.207	3.2353	1	512270			34116	12977	28075	28102	37634	37634					0.10278291402755713
LPTATGDR	8	Unmodified	_LPTATGDR_					0	0	0		ENST00000243077.7_1_12:57600456-57601833:+|nuORF	ENST00000243077.7_1_12:57600456-57601833:+|nuORF	ENST00000243077.7_1_12:57600456-57601833:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	415.7218933105469	2	415.721967	829.429381	1.7526	0.00072857	-1.9593	-0.00081452	-0.20674	-8.5945E-05	415.72103499680065	120.01	1.8058	118.98	118.63	120.43	-1.0271					63	35	3	0	0	0	0.71369	1	9143	9143		40.573	0	1	271890			34117	9764	28076	28103	37635	37635					0.00784352312223291
LPTCLYVI	8	Unmodified	_LPTCLYVI_					0	0	0		ENST00000591753.1_2_17:40715869-40717983:+|nuORF;ENSG00000068120|ENST00000393818|COASY;nc|ENSG00000068120|Q13057-2|COASY	ENST00000591753.1_2_17:40715869-40717983:+|nuORF	ENST00000591753.1_2_17:40715869-40717983:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	461.25897216796875	2	461.259339	920.504126	0.8394	0.00038718	-2.1007	-0.00096896	-1.2613	-0.00058178	461.25818992659634	158.3	0.88368	158.3	157.96	158.84	0					37	18	3	0	0	0	0.57589	1	18555	18555		69.093	11.64	1	105020			34118	1387	28077	28104	37636	37636					0.040693987992540315
LPTDYRKV	8	Unmodified	_LPTDYRKV_					0	0	0		CLDN10|p.W30R|1|0.11|ENSG00000134873|chr13:95552841-95552841|T/A|missense_variant	CLDN10|p.W30R|1|0.11|ENSG00000134873|chr13:95552841-95552841|T/A|missense_variant	CLDN10|p.W30R|1|0.11|ENSG00000134873|chr13:95552841-95552841|T/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.2957763671875	2	496.282192	990.549831	1.8038	0.00089518	0.59628	0.00029592	2.4001	0.0011911	496.28237374876363	108.66	0.3042	108.66	108.5	108.8	0					12	6	3	0	0	0	0.028476	1	12288	12288		31.955	7.7521	1	124860			34119	583	28078	28105	37637	37637					0.05417760305851971
LPTDYRKV	8	Unmodified	_LPTDYRKV_					0	0	0		CLDN10|p.W30R|1|0.11|ENSG00000134873|chr13:95552841-95552841|T/A|missense_variant	CLDN10|p.W30R|1|0.11|ENSG00000134873|chr13:95552841-95552841|T/A|missense_variant	CLDN10|p.W30R|1|0.11|ENSG00000134873|chr13:95552841-95552841|T/A|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	496.282192	990.549831	0.23746	0.00011785	0.83949	0.00041663	1.077	0.00053447	496.28252869281664	108.5	0.49455	108.28	107.98	108.47	-0.22498	-0.11202	0.00010653	NaN	21.96	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16929			34120	583	28078	28105							0.05417760305851971
LPTDYRKV	8	Unmodified	_LPTDYRKV_					0	0	0		CLDN10|p.W30R|1|0.11|ENSG00000134873|chr13:95552841-95552841|T/A|missense_variant	CLDN10|p.W30R|1|0.11|ENSG00000134873|chr13:95552841-95552841|T/A|missense_variant	CLDN10|p.W30R|1|0.11|ENSG00000134873|chr13:95552841-95552841|T/A|missense_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	496.282192	990.549831	0.46077	0.00022867	0.94735	0.00047015	1.4081	0.00069882	496.282040993623	109.83	0.5801	108.23	107.96	108.54	-1.6011	-0.15932	0.00021358	NaN	21.96	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20941			34121	583	28078	28105							0.05417760305851971
LPTFHIYF	8	Unmodified	_LPTFHIYF_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.319580078125	2	519.276378	1036.5382	-0.69331	-0.00036002	-3.2668	-0.0016963	-3.9601	-0.0020564	519.2746321825397	94.713	1.3511	92.245	91.86	93.211	-2.4685					51	26	3	0	0	0	0.028476	1	8282	8282		31.579	0	1	119650			34122	4829	28079	28106	37638	37638					0.02139563282526069
LPTGPRLPGG	10	Unmodified	_LPTGPRLPGG_					0	0	0		ENST00000464157.1_1_9:139902696-139903239:-|nuORF	ENST00000464157.1_1_9:139902696-139903239:-|nuORF	ENST00000464157.1_1_9:139902696-139903239:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.7836608886719	2	482.782359	963.550165	-0.8914	-0.00043035	0.47789	0.00023072	-0.41351	-0.00019964	482.78240925128404	81.313	1.3593	78.603	78.248	79.608	-2.7106					75	27	4	0	0	0	0.62299	1	6675	6675		39.253	0.44669	1	595370			34123	12241	28080	28107	37639	37639					0.06693180025706624
LPTHAAHRPQ	10	Unmodified	_LPTHAAHRPQ_					0	0	0		ENST00000451963.1_2_7:99818153-99818871:+|nuORF;ENSG00000213413|ENST00000699088|PVRIG;nc|ENSG00000213413|Q6DKI7|PVRIG	ENST00000451963.1_2_7:99818153-99818871:+|nuORF	ENST00000451963.1_2_7:99818153-99818871:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	564.3065795898438	2	564.307064	1126.59957	1.0995	0.00062047	-2.699	-0.0015231	-1.5995	-0.00090261	564.3042933701876	122.34	1.2059	121.31	120.8	122	-1.0286					61	22	5	0	0	0	0.69073	1	9394	9394		31.53	0	1	515080			34124	9128	28081	28108	37640	37640					0.041338880344937934
LPTKFVKVL	9	Unmodified	_LPTKFVKVL_					0	0	0			REV__tr|A0A7D7AH66|A0A7D7AH66_9CLOTKetohydroxyglutaratealdolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11315PE=3SV=1	REV__tr|A0A7D7AH66|A0A7D7AH66_9CLOTKetohydroxyglutaratealdolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11315PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8068237304688	2	522.844428	1043.6743	-0.8608	-0.00045007	2.8231	0.0014761	1.9623	0.001026	522.846950519677	55.69	0.2854	55.69	55.559	55.845	0					10	6	2	0	0	0	0.027462	1	4582	4582		30.504	0	1	66287	+		34125	32727	28082	28109	37641	37641					0.15421257793195764
LPTKSPLIQKS	11	Unmodified	_LPTKSPLIQKS_					0	0	0			REV__nc|ENSG00000101745|Q6UB98-2|ANKRD12	REV__nc|ENSG00000101745|Q6UB98-2|ANKRD12	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3709716796875	2	606.371538	1210.72852	-2.264	-0.0013728	-1.0272	-0.00062285	-3.2912	-0.0019957	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.71321	1	12547	12547		25.126	6.0225	1	205770	+		34126	17515	28083	28110	37642	37642					0.13158805154080255
LPTKVALALL	10	Unmodified	_LPTKVALALL_					0	0	0		ENSG00000095951|ENST00000379388|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	ENSG00000095951|ENST00000379388|HIVEP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.7922973632812	2	519.84971	1037.68487	-0.13053	-6.7855E-05	-3.1986	-0.0016628	-3.3291	-0.0017306	519.8491081617215	86.135	2.08	84.645	84.196	86.276	-1.4906					100	40	5	0	0	0	0.026523	1	7494	7494		44.377	0	1	410990			34127	1941	28084	28111	37643	37643					0.1675324044761055
LPTLTWVLL	9	Unmodified	_LPTLTWVLL_					0	0	0		ENST00000258145.7_1_12:65122776-65122830:-|nuORF	ENST00000258145.7_1_12:65122776-65122830:-|nuORF	ENST00000258145.7_1_12:65122776-65122830:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	528.3287353515625	2	528.328611	1054.64267	0.33475	0.00017686	-0.40473	-0.00021383	-0.069982	-3.6974E-05	528.3282724916941	128.79	3.3005	127.69	127.27	130.57	-1.0933					188	66	4	0	0	0	0.36502	1	10163	10163		55.504	2.1528	1	235110			34128	9836	28085	28112	37644	37644					0.11753265039237704
LPTMGAARTP	10	Unmodified	_LPTMGAARTP_					0	0	0			REV__ZMIZ2|p.L467Sfs*96|1|0.33|ENSG00000122515|chr7:44761707-44761708|-/T|frameshift_variant	REV__ZMIZ2|p.L467Sfs*96|1|0.33|ENSG00000122515|chr7:44761707-44761708|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.76678466796875	2	507.773677	1013.5328	-2.7474	-0.0013951	-4.3923	-0.0022303	-7.1397	-0.0036253	507.77120786999564	36.957	0.59177	34.247	34.14	34.731	-2.7097					16	11	2	0	0	0	0.02658	1	1672	1672		54.776	15.523	1	48697	+		34129	18604	28086	28113	37645	37645					0.02657516428382678
LPTPVQRLL	9	Unmodified	_LPTPVQRLL_					0	0	0		ENST00000464676.5_1_3:133698382-133748739:-|nuORF	ENST00000464676.5_1_3:133698382-133748739:-|nuORF	ENST00000464676.5_1_3:133698382-133748739:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.8120727539062	2	518.829309	1035.64407	-0.042298	-2.1946E-05	-1.792	-0.00092975	-1.8343	-0.00095169	518.8288032655355	88.588	0.6892	86.457	86.061	86.75	-2.1309					34	13	3	0	0	0	0.027433	1	5429	5429		51.335	0	1	47085			34130	12260	28087	28114	37646	37646					0.12766899127996112
LPTQLIRQHY	10	Unmodified	_LPTQLIRQHY_					0	0	0			REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.448906025747238|0.1317034148076854|3.46|417.0|108|2|sense	REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.448906025747238|0.1317034148076854|3.46|417.0|108|2|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	634.8590698242188	2	634.859129	1267.70371	-0.66778	-0.00042395	-0.88367	-0.00056101	-1.5515	-0.00098495	634.8585524737888	96.166	2.5594	95.138	94.813	97.373	-1.0281					149	51	5	0	0	0	0.58067	1	8706	8706		44.377	0	1	1938200	+		34131	28345	28088	28115	37647	37647					0.0805617007138153
LPTRLGRIKG	10	Unmodified	_LPTRLGRIKG_					0	0	0			REV__ENSG00000146938|ENST00000381095|NLGN4X	REV__ENSG00000146938|ENST00000381095|NLGN4X	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.2630615234375	2	555.858932	1109.70331	0.63208	0.00035135	-1.1535	-0.00064116	-0.52138	-0.00028981	555.8582922181779	72.58	0.27287	72.58	72.45	72.723	0					11	6	2	0	0	0	0.027174	1	7073	7073		9.7057	0	1	199030	+		34132	20035	28089	28116	37648	37648					0.15284795142179064
LPTSPPPL	8	Unmodified	_LPTSPPPL_					0	0	0			REV__ENSG00000170396|ENST00000302277|ZNF804A	REV__ENSG00000170396|ENST00000302277|ZNF804A	MULTI-MSMS	OvCa99_classI_Rep5	1	411.2431945800781	2	411.242004	820.469455	3.0869	0.0012695	0.69935	0.0002876	3.7862	0.0015571	411.24220022278166	78.234	1.112	78.234	77.884	78.996	0					57	26	4	0	0	0	0.49583	1	7946	7946		77.944	0	1	5966600	+		34133	21537	28090	28117	37649	37649					0.05203898982802002
LPTSPPPL	8	Unmodified	_LPTSPPPL_					0	0	0			REV__ENSG00000170396|ENST00000302277|ZNF804A	REV__ENSG00000170396|ENST00000302277|ZNF804A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	411.242004	820.469455	0.64755	0.0002663	-0.68491	-0.00028166	-0.037359	-1.5364E-05	411.241618691907	80.84	1.0229	78.517	78.286	79.308	-2.3226	0.14169	-0.00013995	NaN	77.944	35	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228950	+		34134	21537	28090	28117							0.05203898982802002
LPTTGEPMTIP	11	Unmodified	_LPTTGEPMTIP_					0	0	0			REV__ENST00000550254.1_1_12:49580073-49582762:-|nuORF	REV__ENST00000550254.1_1_12:49580073-49582762:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	578.8004760742188	2	578.799557	1155.58456	0.89313	0.00051694	2.6203	0.0015166	3.5134	0.0020335	578.800967232817	144.95	0.71309	144.95	144.64	145.36	0					28	14	3	0	0	0	0.68684	1	16960	16960		34.173	0.65696	1	161520	+		34135	27469	28091	28118	37650	37650					0.012992153316417898
LPTTGVLYK	9	Unmodified	_LPTTGVLYK_					0	0	0		nc|ENSG00000068912|Q96DZ1-2|ERLEC1;ENSG00000068912|ENST00000185150|ERLEC1;nc|ENSG00000068912|Q96DZ1-3|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	MULTI-SECPEP	OvCa9_classI_Rep3	3	497.2834777832031	2	496.294768	990.574983	1.5531	0.00077078	-0.87494	-0.00043423	0.67813	0.00033655	496.2940340114491	111.86	1.5793	110.75	110.3	111.88	-1.1038					60	31	3	0	0	0	0.027462	1	8120	8120		25.574	0	1	44759			34136	1401	28092	28119	37651	37651					0.0793181510841805
LPTTKKAILER	11	Unmodified	_LPTTKKAILER_					0	0	0			REV__nc|ENSG00000125351|Q9BZI7-2|UPF3B	REV__nc|ENSG00000125351|Q9BZI7-2|UPF3B	MULTI-MSMS	OvCa99_classI_Rep5	1	423.93597412109375	3	423.934484	1268.78162	-0.27012	-0.00011451	0.26402	0.00011193	-0.0061013	-2.5866E-06	423.93453591387686	70.375	0.74683	70.375	70.13	70.877	0					57	18	5	0	0	0	0.52474	1	6737	6737		60.691	6.3473	1	5403700	+		34137	18717	28093	28120	37652	37652					0.15798182936759986
LPTTKKAILER	11	Unmodified	_LPTTKKAILER_					0	0	0			REV__nc|ENSG00000125351|Q9BZI7-2|UPF3B	REV__nc|ENSG00000125351|Q9BZI7-2|UPF3B	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	423.934484	1268.78162	-0.27012	-0.00011451	0.26402	0.00011193	-0.0061013	-2.5866E-06	423.93453591387686	70.375	0.74683	70.375	70.13	70.877	0	0.12693	-4.1314E-05	NaN	60.691	57	18	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5403700	+		34138	18717	28093	28120							0.15798182936759986
LPTTKKAILER	11	Unmodified	_LPTTKKAILER_					0	0	0			REV__nc|ENSG00000125351|Q9BZI7-2|UPF3B	REV__nc|ENSG00000125351|Q9BZI7-2|UPF3B	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	423.934484	1268.78162	-0.91213	-0.00038668	0.33637	0.0001426	-0.57575	-0.00024408	423.9345692503731	73.517	1.1455	70.121	69.833	70.978	-3.3961	-0.12693	5.0711E-05	NaN	60.691	50	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	321880	+		34139	18717	28093	28120							0.15798182936759986
LPTTRRPR	8	Unmodified	_LPTTRRPR_					0	0	0		ENST00000438382.2_1_7:74578217-74578785:-|nuORF	ENST00000438382.2_1_7:74578217-74578785:-|nuORF	ENST00000438382.2_1_7:74578217-74578785:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.2275390625	2	498.8067	995.598846	2.2922	0.0011434	3.3121	0.0016521	5.6042	0.0027954	498.8083981527587	94.97	0.38638	94.97	94.732	95.119	0					12	8	2	0	0	0	0.028476	1	10322	10322		26.796	0	1	200000			34140	11897	28094	28121	37653	37653					0.10087093385459411
LPTVVKNV	8	Unmodified	_LPTVVKNV_					0	0	0			REV__ENSG00000115414|ENST00000354785|FN1	REV__ENSG00000115414|ENST00000354785|FN1	MULTI-SECPEP	OvCa9_classI_Rep2	2	436.2615966796875	2	435.276378	868.538203	0.63193	0.00027506	-0.39557	-0.00017218	0.23636	0.00010288	435.27607680509266	64.825	1.0428	62.101	61.598	62.641	-2.7246					59	19	4	0	0	0	0.028476	1	4951	4951		33.516	3.674	1	346720	+		34141	18242	28095	28122	37654	37654					0.09867563282523406
LPTWTLLQL	9	Unmodified	_LPTWTLLQL_					0	0	0			REV__nc|ENSG00000159086|Q9Y5B6-2|PAXBP1	REV__nc|ENSG00000159086|Q9Y5B6-2|PAXBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	542.8226928710938	2	542.823692	1083.63283	2.0735	0.0011256	-3.2861	-0.0017838	-1.2126	-0.00065822	542.8216029330691	85.794	0.48888	85.794	85.544	86.033	0					29	11	4	0	0	0	0.091859	1	9026	9026		99.375	5.3685	1	1288500	+		34142	20593	28096	28123	37655	37655					0.09436077033865331
LPVAAVNVQ	9	Unmodified	_LPVAAVNVQ_					0	0	0		ENSG00000118246|ENST00000402774|FASTKD2	ENSG00000118246|ENST00000402774|FASTKD2	ENSG00000118246|ENST00000402774|FASTKD2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	455.759033203125	2	455.77146	909.528367	-0.090431	-4.1216E-05	-2.1664	-0.00098738	-2.2568	-0.0010286	455.7705755653554	51.521	0.75364	48.347	48.224	48.978	-3.1734					17	14	2	0	0	0	0.027449	1	3082	3082		24.203	0	1	36074			34143	3297	28097	28124	37656	37656					0.06998375277134983
LPVDGRPLPA	10	Unmodified	_LPVDGRPLPA_					0	0	0		ENSG00000205903|ENST00000382252|ZNF316	ENSG00000205903|ENST00000382252|ZNF316	ENSG00000205903|ENST00000382252|ZNF316	MULTI-MSMS	OvCa9_classI_Rep2	2	517.8027954101562	2	517.803291	1033.59203	0.52742	0.0002731	-1.0147	-0.00052544	-0.48733	-0.00025234	517.8026622736127	70.658	1.1873	68.088	67.765	68.952	-2.5707					58	22	4	0	0	0	0.46756	1	5658	5658		58.782	4.0056	1	622630			34144	9090	28098	28125	37657	37657					0.07657735714224145
LPVEARPAAL	10	Unmodified	_LPVEARPAAL_					0	0	0		ENST00000413312.5_1_2:214149168-214161993:+|nuORF	ENST00000413312.5_1_2:214149168-214161993:+|nuORF	ENST00000413312.5_1_2:214149168-214161993:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	518.8115844726562	2	518.811116	1035.60768	1.8637	0.00096692	-2.8661	-0.001487	-1.0023	-0.00052003	518.8096777874774	87.789	3.0579	86.358	85.791	88.849	-1.4311					163	61	6	0	0	0	0.5675	1	7708	7708		45.972	0	1	5567100			34145	11559	28099	28126	37658	37658					0.09130022231261137
LPVEARPAAL	10	Unmodified	_LPVEARPAAL_					0	0	0		ENST00000413312.5_1_2:214149168-214161993:+|nuORF	ENST00000413312.5_1_2:214149168-214161993:+|nuORF	ENST00000413312.5_1_2:214149168-214161993:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	518.8109130859375	2	518.811116	1035.60768	-0.049483	-2.5672E-05	-1.1441	-0.00059357	-1.1936	-0.00061924	518.8105741700431	88.52	3.827	86.389	85.803	89.63	-2.1309					168	75	5	0	0	0	0.22663	3	5380	5362;5380;5404		90.37	14.247	1	8533700			34146	11559	28099	28126	37659;37660;37661	37660					0.09130022231261137
LPVEEIVKV	9	Unmodified	_LPVEEIVKV_					0	0	0		tr|A0A553SRJ1|A0A553SRJ1_NIACIDUF1349domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01195PE=4SV=1	tr|A0A553SRJ1|A0A553SRJ1_NIACIDUF1349domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01195PE=4SV=1	tr|A0A553SRJ1|A0A553SRJ1_NIACIDUF1349domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01195PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.2864379882812	2	513.3157	1024.61685	-0.18259	-9.3728E-05	-3.9853	-0.0020457	-4.1679	-0.0021394	513.3142707937733	65.139	0.79257	65.139	64.955	65.748	0					24	19	2	0	0	0	0.027462	1	6046	6046		23.042	0	1	762940			34147	34268	28100	28127	37662	37662					0.10552370796949617
LPVFIGIIN	9	Unmodified	_LPVFIGIIN_					0	0	0			REV__tr|A0A553STB1|A0A553STB1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04720PE=4SV=1	REV__tr|A0A553STB1|A0A553STB1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04720PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.2353210449219	2	493.307678	984.600803	2.107	0.0010394	0.094614	4.6674E-05	2.2016	0.0010861	493.3075138184205	98.745	0.28168	98.745	98.596	98.877	0					8	6	2	0	0	0	0.027456	1	10874	10874		35.201	0	1	272070	+		34148	30941	28101	28128	37663	37663					0.10788709350708814
LPVFTIKNN	9	Unmodified	_LPVFTIKNN_					0	0	0			REV__tr|A0A7D6VR79|A0A7D6VR79_9CLOTAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_04520PE=4SV=1	REV__tr|A0A7D6VR79|A0A7D6VR79_9CLOTAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_04520PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3031005859375	2	523.305667	1044.59678	-0.69596	-0.0003642	-3.2951	-0.0017244	-3.9911	-0.0020886	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.67509	1	13806	13806		23.042	0.46283	1	130240	+		34149	31395	28102	28129	37664	37664					0.0762661985700106
LPVGRVPATGI	11	Unmodified	_LPVGRVPATGI_					0	0	0		ENST00000461555.1_1_17:16472062-16472293:-|nuORF;ENST00000395824.5_1_17:16471140-16472440:-|nuORF	ENST00000461555.1_1_17:16472062-16472293:-|nuORF	ENST00000461555.1_1_17:16472062-16472293:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3312377929688	2	540.332216	1078.64988	-1.5762	-0.00085169	-2.2598	-0.001221	-3.836	-0.0020727	540.3309156564876	138.68	4.2384	138.45	137.13	141.37	-0.22697					227	86	3	0	0	0	0.70142	1	13770	13770		29.17	0.020503	1	66382			34150	11301	28103	28130	37665	37665					0.11369997639667417
LPVHLSAFF	9	Unmodified	_LPVHLSAFF_					0	0	0			REV__ENST00000481328.7_1_11:76905078-76923312:+|nuORF	REV__ENST00000481328.7_1_11:76905078-76923312:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.3114013671875	2	515.789653	1029.56475	1.9084	0.00098431	-3.3583	-0.0017322	-1.4499	-0.00074787	515.7878322208486	95.275	0.58151	95.275	95.033	95.615	0					28	13	3	0	0	0	0.027462	1	10403	10403		33.516	0	1	643830	+		34151	26476	28104	28131	37666	37666					0.051152521738458745
LPVHRLLT	8	Unmodified	_LPVHRLLT_					0	0	0		ENST00000496342.1_1_22:29656732-29660364:-|nuORF	ENST00000496342.1_1_22:29656732-29660364:-|nuORF	ENST00000496342.1_1_22:29656732-29660364:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.6100158691406	2	474.803094	947.591636	1.4751	0.00070039	0.99148	0.00047076	2.4666	0.0011711	474.803295350887	79.309	0.50631	79.309	79.079	79.585	0					22	12	3	0	0	0	0.028476	1	8087	8087		68.485	2.6815	1	915910			34152	12785	28105	28132	37667	37667					0.11574360785039062
LPVHVFEAL	9	Unmodified	_LPVHVFEAL_					0	0	0		ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.7935180664062	2	512.794935	1023.57532	0.16029	8.2195E-05	-4.4712	-0.0022928	-4.3109	-0.0022106	512.7923985142307	60.4	1.4367	56.97	56.601	58.038	-3.43					67	28	4	0	0	0	0.30002	1	4085	4085		62.978	2.0065	1	414970			34153	2128	28106	28133	37668	37668					0.06447234828260662
LPVHVFEAL	9	Unmodified	_LPVHVFEAL_					0	0	0		ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	ENSG00000100982|ENST00000372409|PCIF1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	512.794935	1023.57532	-0.41129	-0.00021091	-3.8377	-0.001968	-4.249	-0.0021789	512.7928412982142	59.784	1.1453	57.014	56.567	57.712	-2.7702	0.021873	0.00030317	NaN	62.978	50	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134100			34154	2128	28106	28133							0.06447234828260662
LPVIIKRNI	9	Unmodified	_LPVIIKRNI_					0	0	0		ENST00000296051.6_1_3:148885711-148890041:+|nuORF	ENST00000296051.6_1_3:148885711-148890041:+|nuORF	ENST00000296051.6_1_3:148885711-148890041:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	533.2824096679688	2	533.360776	1064.707	-0.35375	-0.00018867	-0.96358	-0.00051394	-1.3173	-0.00070261	533.3603419249278	92.208	0.31566	90.972	90.798	91.114	-1.2355					7	5	2	0	0	0	0.027462	1	8209	8209		18.324	0	1	9429.7			34155	10129	28107	28134	37669	37669					0.17723464916025478
LPVIKKYF	8	Unmodified	_LPVIKKYF_					0	0	0			REV__tr|A0A7D6ZHX8|A0A7D6ZHX8_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04745PE=4SV=1	REV__tr|A0A7D6ZHX8|A0A7D6ZHX8_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04745PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.3193664550781	2	504.318046	1006.62154	-0.94063	-0.00047438	3.8169	0.0019249	2.8762	0.0014505	504.3198291935092	144.23	1.5675	142.79	142.43	143.99	-1.4357					72	29	4	0	0	0	0.74595	1	14163	14163		14.664	0	1	140800	+		34156	32041	28108	28135	37670	37670					0.11849299730363327
LPVKRKGKI	9	Unmodified	_LPVKRKGKI_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.8206176757812	2	519.860944	1037.70733	0.82398	0.00042836	3.7615	0.0019554	4.5855	0.0023838	519.8617909836211	131.83	0.19218	131.6	131.5	131.69	-0.22696					6	3	2	0	0	0	0.027462	1	12987	12987		25.45	17.76	1	11479			34157	8768	28109	28136	37671	37671					0.18998884635902868
LPVKRLIDWQ	10	Unmodified	_LPVKRLIDWQ_					0	0	0			REV__ENST00000372927.5_2_X:100356228-100357313:+|nuORF	REV__ENST00000372927.5_2_X:100356228-100357313:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	634.378173828125	2	634.379697	1266.74484	0.70958	0.00045014	-3.9824	-0.0025264	-3.2728	-0.0020762	634.3769097150116	164.24	2.8363	164.24	163	165.84	0					295	106	3	0	0	0	0.79213	1	19152	19152		19.997	1.7347	1	532610	+		34158	25020	28110	28137	37672	37672					0.12213931110841258
LPVKRLIDWQ	10	Unmodified	_LPVKRLIDWQ_					0	0	0			REV__ENST00000372927.5_2_X:100356228-100357313:+|nuORF	REV__ENST00000372927.5_2_X:100356228-100357313:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	634.3779907226562	2	634.379697	1266.74484	-5.7659	-0.0036578	3.1969	0.0020281	-2.569	-0.0016297	634.3814892688545	163.56	1.4089	163.33	162.75	164.16	-0.22696					114	47	3	0	0	0	0.72319	2	16683	16683;16690		27.882	4.3595	1	320930	+		34159	25020	28110	28137	37673;37674	37673					0.12213931110841258
LPVKYRTH	8	Unmodified	_LPVKYRTH_					0	0	0		sp|Q6SWA4|UL27_HCMVMProteinUL27OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL27PE=1SV=1;sp|P16763|UL27_HCMVAProteinUL27OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL27PE=3SV=1	sp|Q6SWA4|UL27_HCMVMProteinUL27OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL27PE=1SV=1	sp|Q6SWA4|UL27_HCMVMProteinUL27OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL27PE=1SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	507.295166015625	2	507.298176	1012.5818	-0.37677	-0.00019113	-3.957	-0.0020074	-4.3337	-0.0021985	507.29607753410806	39.086	0.53915	39.086	38.793	39.332	0					19	11	2	0	0	0	0.64026	1	2274	2274		55.504	2.1528	1	616860			34160	32896	28111	28138	37675	37675					0.07601172779641274
LPVLFGIID	9	Unmodified	_LPVLFGIID_					0	0	0		ENST00000440472.6_1_18:12452313-12452415:-|nuORF	ENST00000440472.6_1_18:12452313-12452415:-|nuORF	ENST00000440472.6_1_18:12452313-12452415:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.2353210449219	2	493.799686	985.584819	2.2297	0.001101	-4.2091	-0.0020784	-1.9794	-0.00097743	493.7976666163655	98.735	0.64294	98.735	98.552	99.195	0					24	15	2	0	0	0	0.027462	1	10874	10874		37.028	1.8278	1	568470			34161	11922	28112	28139	37676	37676					0.09145003113803796
LPVLISASLLL	11	Unmodified	_LPVLISASLLL_					0	0	0			REV__CEACAM19|p.L24Pfs*106|1|0.03|ENSG00000186567|chr19:44672608-44672609|-/G|frameshift_variant	REV__CEACAM19|p.L24Pfs*106|1|0.03|ENSG00000186567|chr19:44672608-44672609|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	569.8345336914062	2	569.875925	1137.7373	-0.8213	-0.00046804	3.237	0.0018447	2.4157	0.0013766	569.8774185513948	100.09	0.30196	97.762	97.617	97.919	-2.3253					9	5	2	0	0	0	0.025909	1	8942	8942		19.997	0	1	9786.3	+		34162	15776	28113	28140	37677	37677					0.1739377879055155
LPVLPKRP	8	Unmodified	_LPVLPKRP_					0	0	0			REV__ENSG00000145386|ENST00000274026|CCNA2	REV__ENSG00000145386|ENST00000274026|CCNA2	MULTI-MSMS	OvCa99_classI_Rep5	1	460.3087463378906	2	460.308013	918.601472	1.2267	0.00056464	-0.41369	-0.00019042	0.81297	0.00037422	460.30747564254347	145.75	1.1385	145.75	145.48	146.62	0					31	22	2	0	0	0	0.69415	1	17051	17051		44.531	0	1	69899	+		34163	19962	28114	28141	37678	37678					0.13891548790411434
LPVLQLLLKV	10	Unmodified	_LPVLQLLLKV_					0	0	0			REV__ENSG00000136237|ENST00000665637|RAPGEF5	REV__ENSG00000136237|ENST00000665637|RAPGEF5	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.3124389648438	2	568.394285	1134.77402	2.5042	0.0014234	-2.2567	-0.0012827	0.24749	0.00014067	568.8952519387503	84.341	0.12624	84.341	84.261	84.388	0					4	2	2	0	0	0	0.027056	1	8800	8800		27.882	0	1	52217	+		34164	19370	28115	28142	37679	37679					0.21202075407109078
LPVLSMDL	8	Oxidation (M)	_LPVLSM(Oxidation (M))DL_		LPVLSM(1)DL		LPVLSM(60)DL	0	0	1		ENST00000555284.1_1_14:81736911-81745120:-|nuORF;nc|ENSG00000140022|Q8WXE9|STON2;nc|ENSG00000140022|Q8WXE9-3|STON2;ENSG00000140022|ENST00000614646|STON2	ENST00000555284.1_1_14:81736911-81745120:-|nuORF	ENST00000555284.1_1_14:81736911-81745120:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	452.2482604980469	2	452.246429	902.478305	0.85495	0.00038665	3.3572	0.0015183	4.2121	0.0019049	452.2477760980005	52.531	1.6304	49.718	49.295	50.926	-2.8129					82	32	4	0	0	0	0.61758	1	3533	3533		60.294	7.9948	1	535280			34165	13645	28116	28143	37680	37680		352			0.023165045569840004
LPVLVRDL	8	Unmodified	_LPVLVRDL_					0	0	0		ENST00000367157.4_2_1:205290701-205290866:-|nuORF	ENST00000367157.4_2_1:205290701-205290866:-|nuORF	ENST00000367157.4_2_1:205290701-205290866:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	462.7620849609375	2	462.797478	923.580402	2.208	0.0010218	0.17825	8.2492E-05	2.3862	0.0011043	462.7973917976553	76.362	0.88706	76.362	76.115	77.002	0					34	21	3	0	0	0	0.028476	1	7726	7726		18.324	0	1	1292100			34166	10835	28117	28144	37681	37681					0.11555538690890899
LPVNYKNTI	9	Unmodified	_LPVNYKNTI_					0	0	0			REV__tr|A0A7D6VPK5|A0A7D6VPK5_9CLOTThiamine-phosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=thiEPE=3SV=1	REV__tr|A0A7D6VPK5|A0A7D6VPK5_9CLOTThiamine-phosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=thiEPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	531.3034057617188	2	531.303124	1060.5917	1.5211	0.00080816	-1.8413	-0.00097827	-0.32019	-0.00017012	531.3020896930936	122.17	1.3111	121.14	120.8	122.11	-1.0286					58	24	4	0	0	0	0.31747	1	9377	9377		60.972	0	1	266520	+		34167	31255	28118	28145	37682	37682					0.06382315994369492
LPVPPRRV	8	Unmodified	_LPVPPRRV_					0	0	0		ENST00000531101.5_1_11:4621508-4624512:-|nuORF;ENSG00000167333|ENST00000300747|TRIM68;nc|ENSG00000167333|Q6AZZ1-2|TRIM68	ENST00000531101.5_1_11:4621508-4624512:-|nuORF	ENST00000531101.5_1_11:4621508-4624512:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	467.30029296875	2	467.303262	932.59197	-2.6989	-0.0012612	-1.7541	-0.00081971	-4.453	-0.0020809	467.3023498206503	147.52	1.7467	147.29	146.82	148.57	-0.22696					88	34	4	0	0	0	0.75915	1	14921	14921		20.482	4.8456	1	302680			34168	6782	28119	28146	37683	37683					0.12297780504900402
LPVRRLGRLA	10	Unmodified	_LPVRRLGRLA_					0	0	0		ENST00000261191.11_1_12:27090906-27091155:-|nuORF	ENST00000261191.11_1_12:27090906-27091155:-|nuORF	ENST00000261191.11_1_12:27090906-27091155:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	575.880615234375	2	575.880199	1149.74584	-0.33635	-0.0001937	2.4703	0.0014226	2.1339	0.0012289	575.8816146863785	130.37	1.3721	129.25	128.83	130.21	-1.1121					69	27	4	0	0	0	0.72319	1	10374	10374		27.882	1.0861	1	151570			34169	9857	28120	28147	37684	37684					0.17696190270407897
LPVRRLGRLA	10	Unmodified	_LPVRRLGRLA_					0	0	0		ENST00000261191.11_1_12:27090906-27091155:-|nuORF	ENST00000261191.11_1_12:27090906-27091155:-|nuORF	ENST00000261191.11_1_12:27090906-27091155:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8805541992188	2	575.880199	1149.74584	2.6187	0.0015081	-0.52451	-0.00030205	2.0942	0.001206	575.8797536026407	130.77	1.5941	129.29	128.86	130.45	-1.4779					88	32	4	0	0	0	0.71192	1	12575	12575		29.15	4.9468	1	237440			34170	9857	28120	28147	37685	37685					0.17696190270407897
LPVSALRQ	8	Unmodified	_LPVSALRQ_					0	0	0			REV__ENST00000293349.10_1_17:40826411-40828904:-|nuORF	REV__ENST00000293349.10_1_17:40826411-40828904:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	442.27203369140625	2	442.271627	882.528701	0.50195	0.000222	-0.10965	-4.8497E-05	0.3923	0.0001735	442.2713713155425	25.179	0.35062	25.179	25.042	25.392	0					12	6	3	0	0	0	0.73626	1	542	542		33.516	0	1	50141	+		34171	24172	28121	28148	37686	37686					0.08273794996989636
LPVSALRQ	8	Unmodified	_LPVSALRQ_					0	0	0			REV__ENST00000293349.10_1_17:40826411-40828904:-|nuORF	REV__ENST00000293349.10_1_17:40826411-40828904:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	442.271627	882.528701	0.50195	0.000222	-0.10965	-4.8497E-05	0.3923	0.0001735	442.2713713155425	25.179	0.35062	25.179	25.042	25.392	0	0	0	NaN	33.516	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50141	+		34172	24172	28121	28148							0.08273794996989636
LPVSEGADSR	10	Unmodified	_LPVSEGADSR_					0	0	0		ENST00000461043.6_1_20:34129960-34130047:+|nuORF	ENST00000461043.6_1_20:34129960-34130047:+|nuORF	ENST00000461043.6_1_20:34129960-34130047:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.7959594726562	2	515.76182	1029.50909	-0.60873	-0.00031396	-3.807	-0.0019635	-4.4157	-0.0022775	515.7583822015762	39.063	0.26939	39.063	38.927	39.196	0					8	5	2	0	0	0	0.026752	1	2262	2262		20.947	0	1	23101			34173	12168	28122	28149	37687	37687					-0.00448625804438052
LPVSILCLS	9	Unmodified	_LPVSILCLS_					0	0	0			REV__ENSG00000181017|ENST00000641377|OR56B2P	REV__ENSG00000181017|ENST00000641377|OR56B2P	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.7890930175781	2	472.777896	943.54124	-0.22559	-0.00010666	3.8626	0.0018261	3.637	0.0017195	472.7795750186961	42.018	0.97425	39.038	38.853	39.828	-2.9804					39	18	3	0	0	0	0.027462	1	1977	1977		31.955	19.748	1	235550	+		34174	22213	28123	28150	37688	37688					0.06721070345008684
LPVSILCLS	9	Unmodified	_LPVSILCLS_					0	0	0			REV__ENSG00000181017|ENST00000641377|OR56B2P	REV__ENSG00000181017|ENST00000641377|OR56B2P	MULTI-MATCH	OvCa9_classI_Rep2	2		2	472.777896	943.54124	0.82655	0.00039077	2.8166	0.0013316	3.6432	0.0017224	472.77914682809046	41.662	0.68983	38.952	38.783	39.473	-2.7097	-0.04252	-0.00057018	NaN	24.203	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54653	+		34175	22213	28123	28150							0.06721070345008684
LPVTGLPRAVG	11	Unmodified	_LPVTGLPRAVG_					0	0	0			REV__ENST00000354619.9_1_1:236445094-236445265:-|nuORF	REV__ENST00000354619.9_1_1:236445094-236445265:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.33349609375	2	540.332216	1078.64988	3.3207	0.0017943	0.29456	0.00015916	3.6153	0.0019535	540.3322174762676	131.73	3.1393	130.23	129.77	132.91	-1.5015					134	63	4	0	0	0	0.64273	1	12723	12723		40.778	0	1	310750	+		34176	24738	28124	28151	37689	37689					0.11369997639667417
LPVVATHTLG	10	Unmodified	_LPVVATHTLG_					0	0	0			REV__ENST00000547908.1_1_12:98989476-98991822:+|nuORF	REV__ENST00000547908.1_1_12:98989476-98991822:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	504.29864501953125	2	504.297842	1006.58113	-0.082287	-4.1497E-05	-0.36053	-0.00018182	-0.44282	-0.00022331	504.2976378271559	104.41	3.9037	102.97	102.5	106.4	-1.4347					184	75	5	0	0	0	0.58282	1	7272	7272		44.117	5.3107	1	927760	+		34177	16972	28125	28152	37690	37690					0.07810333339944009
LPVVGSYAW	9	Unmodified	_LPVVGSYAW_					0	0	0		OR5D18|p.L145P|1|0.25|ENSG00000186119|chr11:55820063-55820063|T/C|missense_variant	OR5D18|p.L145P|1|0.25|ENSG00000186119|chr11:55820063-55820063|T/C|missense_variant	OR5D18|p.L145P|1|0.25|ENSG00000186119|chr11:55820063-55820063|T/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	496.264892578125	2	496.26601	990.517468	1.8637	0.0009249	-2.9746	-0.0014762	-1.1108	-0.00055127	496.2643848501877	59.438	2.028	56.339	55.347	57.375	-3.0993					83	55	2	0	0	0	0.58665	1	1889	1889		33.516	0	1	32593			34178	15463	28126	28153	37691	37691					0.02182972902835445
LPVVLWIIF	9	Unmodified	_LPVVLWIIF_					0	0	0		ENST00000264431.8_1_4:160271366-160274004:+|nuORF	ENST00000264431.8_1_4:160271366-160274004:+|nuORF	ENST00000264431.8_1_4:160271366-160274004:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	550.3472290039062	2	550.349346	1098.68414	0.53002	0.00029169	-2.5747	-0.001417	-2.0447	-0.0011253	550.3478385445093	159.18	1.1164	159.18	158.94	160.06	0					51	22	3	0	0	0	0.53728	2	18676	18676;18699		39.021	3.4032	1	290840			34179	9931	28127	28154	37692;37693	37692					0.1387444579854673
LPVYYCWI	8	Unmodified	_LPVYYCWI_					0	0	0		ENST00000378654.8_1_13:48517190-48517361:-|nuORF	ENST00000378654.8_1_13:48517190-48517361:-|nuORF	ENST00000378654.8_1_13:48517190-48517361:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.328125	2	528.764789	1055.51502	0.16589	8.7717E-05	-3.8235	-0.0020217	-3.6576	-0.001934	529.2640609113191	129.05	0.29524	127.59	127.5	127.79	-1.4565					7	5	2	0	0	0	0.028476	1	12340	12340		24.504	4.0222	1	18355			34180	11111	28128	28155	37694	37694					-0.01051198826462496
LPWEISPLY	9	Unmodified	_LPWEISPLY_					0	0	0		HERVH-int_dup395|chr1:229174781-229177850:+|1.6476935486843904|0.2234293350488721|2.88|410.0|30|2|sense	HERVH-int_dup395|chr1:229174781-229177850:+|1.6476935486843904|0.2234293350488721|2.88|410.0|30|2|sense	HERVH-int_dup395|chr1:229174781-229177850:+|1.6476935486843904|0.2234293350488721|2.88|410.0|30|2|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	558.8276977539062	2	559.30005	1116.58555	1.7825	0.00099694	0.29816	0.00016676	2.0806	0.0011637	559.3004000610073	96.723	0.74827	94.297	93.913	94.661	-2.4256					26	14	2	0	0	0	0.027462	1	8560	8560		40.573	8.6178	1	85129			34181	14422	28129	28156	37695	37695					0.031917977628836525
LPWEISPLY	9	Unmodified	_LPWEISPLY_					0	0	0		HERVH-int_dup395|chr1:229174781-229177850:+|1.6476935486843904|0.2234293350488721|2.88|410.0|30|2|sense	HERVH-int_dup395|chr1:229174781-229177850:+|1.6476935486843904|0.2234293350488721|2.88|410.0|30|2|sense	HERVH-int_dup395|chr1:229174781-229177850:+|1.6476935486843904|0.2234293350488721|2.88|410.0|30|2|sense	MULTI-MATCH	OvCa9_classI_Rep3	3		2	559.30005	1116.58555	-1.1887	-0.00066486	3.3036	0.0018477	2.1148	0.0011828	559.3022146751001	96.054	0.9417	94.226	93.731	94.672	-1.8286	-0.035688	0.0010835	NaN	40.573	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83942			34182	14422	28129	28156							0.031917977628836525
LPWIWLPN	8	Unmodified	_LPWIWLPN_					0	0	0			REV__ENST00000332499.3_1_17:43226005-43226326:+|nuORF	REV__ENST00000332499.3_1_17:43226005-43226326:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.8121948242188	2	519.792195	1037.56984	-0.85101	-0.00044235	-2.7396	-0.001424	-3.5906	-0.0018664	520.2922604985062	99.338	0.67551	97.013	96.536	97.212	-2.3253					28	12	3	0	0	0	0.028476	1	8811	8811		46.766	0.81448	1	122670	+		34183	24547	28130	28157	37696	37696					0.05255556036468079
LPWLVSPVD	9	Unmodified	_LPWLVSPVD_					0	0	0			REV__tr|A0A553SKZ4|A0A553SKZ4_NIACIDNApolymeraseIVOS=NialliacirculansOX=1397GN=dinBPE=3SV=1	REV__tr|A0A553SKZ4|A0A553SKZ4_NIACIDNApolymeraseIVOS=NialliacirculansOX=1397GN=dinBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	512.810546875	2	513.286943	1024.55933	0.016086	8.2566E-06	-1.6727	-0.00085859	-1.6566	-0.00085033	513.2861626856898	93.45	1.4375	92.282	91.855	93.293	-1.168					32	27	2	0	0	0	0.027392	1	8379	8379		73.975	5.1879	1	21195	+		34184	30171	28131	28158	37697	37697					0.04803528591378381
LPWLVSPVD	9	Unmodified	_LPWLVSPVD_					0	0	0			REV__tr|A0A553SKZ4|A0A553SKZ4_NIACIDNApolymeraseIVOS=NialliacirculansOX=1397GN=dinBPE=3SV=1	REV__tr|A0A553SKZ4|A0A553SKZ4_NIACIDNApolymeraseIVOS=NialliacirculansOX=1397GN=dinBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.8118286132812	2	513.286943	1024.55933	-0.50461	-0.00025901	-0.97599	-0.00050096	-1.4806	-0.00075997	513.2866431542536	94.549	0.95161	92.081	91.91	92.861	-2.4685					25	18	2	0	0	0	0.027392	1	8346	8346		73.975	0	1	24627	+		34185	30171	28131	28158	37698	37698					0.04803528591378381
LPWPARPAL	9	Unmodified	_LPWPARPAL_					0	0	0		ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.8043518066406	2	510.803094	1019.59164	-2.1156	-0.0010806	2.6341	0.0013455	0.51851	0.00026486	510.80420936611904	107.67	1.0272	105.8	105.49	106.51	-1.8785					37	20	3	0	0	0	0.36502	1	9828	9828		55.504	11.387	1	190310			34186	6650	28132	28159	37699	37699					0.08262360785033707
LPWPARPAL	9	Unmodified	_LPWPARPAL_					0	0	0		ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	510.803094	1019.59164	-0.2532	-0.00012933	0.28744	0.00014683	0.034247	1.7494E-05	510.8029822763374	106.21	0.99685	105.77	105.4	106.39	-0.43642	-0.033296	-0.00082067	NaN	55.504	47	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156720			34187	6650	28132	28159							0.08262360785033707
LPWPARPAL	9	Unmodified	_LPWPARPAL_					0	0	0		ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	510.803094	1019.59164	0.32424	0.00016562	-0.52991	-0.00027068	-0.20567	-0.00010506	510.8026202373114	107.12	0.89074	105.85	105.57	106.47	-1.267	0.043285	-0.0016557	NaN	55.504	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202010			34188	6650	28132	28159							0.08262360785033707
LPWPFQGTI	9	Unmodified	_LPWPFQGTI_					0	0	0		ENSG00000175104|ENST00000526995|TRAF6	ENSG00000175104|ENST00000526995|TRAF6	ENSG00000175104|ENST00000526995|TRAF6	MULTI-MSMS	OvCa99_classI_Rep5	1	529.7889404296875	2	529.78711	1057.55967	1.6819	0.00089104	3.3513	0.0017755	5.0332	0.0026665	529.7887292472137	135.76	1.0799	135.76	135.41	136.49	0					46	22	3	0	0	0	0.40667	1	15861	15861		51.335	10.557	1	1026500			34189	7515	28133	28160	37700	37700					0.0331894831124373
LPWPPGCPL	9	Unmodified	_LPWPPGCPL_					0	0	0			REV__ENST00000471394.6_2_1:44399917-44401801:+|nuORF	REV__ENST00000471394.6_2_1:44399917-44401801:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.31915283203125	2	490.257131	978.499709	1.0593	0.00051932	3.7986	0.0018623	4.8579	0.0023816	490.25895728508465	109.43	0.44075	109.43	109.19	109.64	0					23	9	3	0	0	0	0.027462	1	12407	12407		39.021	11.139	1	385100	+		34190	26280	28134	28161	37701	37701					0.009599343763397883
LPWQIVKG	8	Unmodified	_LPWQIVKG_					0	0	0			REV__ENST00000419886.6_1_19:12129079-12146462:-|nuORF	REV__ENST00000419886.6_1_19:12129079-12146462:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.74810791015625	2	470.78437	939.554188	-0.30501	-0.00014359	-2.6892	-0.001266	-2.9942	-0.0014096	470.78242032103685	48.146	0.56033	48.146	47.941	48.501	0					24	12	3	0	0	0	0.028476	1	3536	3536		13.775	0	1	411370	+		34191	25589	28135	28162	37702	37702					0.08199269519423069
LPWVGPVPL	9	Unmodified	_LPWVGPVPL_					0	0	0			REV__ENST00000336078.8_1_18:56651316-56651520:+|nuORF	REV__ENST00000336078.8_1_18:56651316-56651520:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.2464294433594	2	489.294571	976.574589	-0.21147	-0.00010347	-4.383	-0.0021446	-4.5945	-0.0022481	489.2923227920162	62.85	1.4513	59.392	58.864	60.315	-3.4577					71	29	4	0	0	0	0.027462	1	4411	4411		21.702	0	1	595490	+		34192	24583	28136	28163	37703	37703					0.0853644017923898
LPWVLEVVF	9	Unmodified	_LPWVLEVVF_					0	0	0			REV__ENSG00000198691|ENST00000370225|ABCA4	REV__ENSG00000198691|ENST00000370225|ABCA4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.3077392578125	2	551.320786	1100.62702	-1.6339	-0.00090082	4.0219	0.0022174	2.388	0.0013166	551.3228598748835	48.947	1.2492	45.84	45.604	46.854	-3.1077					46	23	4	0	0	0	0.027462	1	2717	2717		33.516	0.70317	1	117980	+		34193	23044	28137	28164	37704	37704					0.08072978522204721
LPWVNSLLCC	10	Unmodified	_LPWVNSLLCC_					0	0	0		ENST00000394597.6_1_17:33390695-33390797:-|nuORF	ENST00000394597.6_1_17:33390695-33390797:-|nuORF	ENST00000394597.6_1_17:33390695-33390797:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.8644409179688	2	574.285563	1146.55657	2.386	0.0013702	-1.078	-0.0006191	1.3079	0.00075113	574.2848217461122	96.061	0.50907	96.061	95.869	96.378	0					19	11	2	0	0	0	0.026849	1	10508	10508		32.812	0	1	781550			34194	11271	28138	28165	37705	37705					-0.010843861294233648
LPYALTKTL	9	Unmodified	_LPYALTKTL_					0	0	0			REV__tr|A0A553SSP1|A0A553SSP1_NIACIGlycosylhydrolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_03490PE=3SV=1	REV__tr|A0A553SSP1|A0A553SSP1_NIACIGlycosylhydrolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_03490PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.8440246582031	2	510.310418	1018.60628	0.10473	5.3445E-05	0.22741	0.00011605	0.33214	0.00016949	510.3097169971335	123.79	0.29613	123.56	123.43	123.73	-0.23193					6	5	2	0	0	0	0.027456	1	12017	12017		30.504	0	1	12233	+		34195	30856	28139	28166	37706	37706					0.09772388142516775
LPYAREIT	8	Unmodified	_LPYAREIT_					0	0	0			REV__nc|ENSG00000157765|O95436-2|SLC34A2	REV__nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.7700500488281	2	481.768917	961.523281	-1.0876	-0.00052397	0.94065	0.00045317	-0.14695	-7.0795E-05	481.76924664079263	66.122	2.1092	62.633	62.126	64.235	-3.4898					85	42	4	0	0	0	0.25402	1	4811	4811		115.46	16.084	1	1312700	+		34196	20531	28140	28167	37707	37707					0.04098071414500737
LPYAREIT	8	Unmodified	_LPYAREIT_					0	0	0			REV__nc|ENSG00000157765|O95436-2|SLC34A2	REV__nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	481.768917	961.523281	0.75623	0.00036433	-0.87097	-0.00041961	-0.11474	-5.5277E-05	481.7683649220963	65.456	1.8049	62.76	62.21	64.014	-2.6958	0.063893	-0.0012363	NaN	115.46	71	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247520	+		34197	20531	28140	28167							0.04098071414500737
LPYETLKDN	9	Unmodified	_LPYETLKDN_					0	0	0			REV__nc|ENSG00000173852|Q2PZI1|DPY19L1	REV__nc|ENSG00000173852|Q2PZI1|DPY19L1	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.7836303710938	2	546.782222	1091.54989	3.705	0.0020258	-3.7762	-0.0020648	-0.07122	-3.8942E-05	546.7800033528225	131.81	1.3099	130.31	129.98	131.29	-1.5015					60	25	3	0	0	0	0.56889	1	12748	12748		35.618	1.4457	1	73348	+		34198	21805	28141	28168	37708	37708					0.007777155151870829
LPYGVAVGVA	10	Unmodified	_LPYGVAVGVA_					0	0	0		nc|ENSG00000174502|Q7LBE3-2|SLC26A9;ENSG00000174502|ENST00000367135|SLC26A9	nc|ENSG00000174502|Q7LBE3-2|SLC26A9	nc|ENSG00000174502|Q7LBE3-2|SLC26A9	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.2956237792969	2	473.273835	944.533118	1.988	0.00094086	-4.223	-0.0019986	-2.235	-0.0010578	473.2717461882858	92.653	0.96011	92.653	92.008	92.968	0					37	22	3	0	0	0	0.026672	1	10055	10055		35.201	0	1	431050			34199	15185	28142	28169	37709	37709					0.05863259419891165
LPYKAGLSL	9	Unmodified	_LPYKAGLSL_					0	0	0		nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;ENST00000465814.5_1_11:72407932-72423670:-|nuORF;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-5|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	MULTI-MSMS	OvCa9_classI_Rep3	3	481.2905578613281	2	481.289485	960.564418	-0.59149	-0.00028468	0.32422	0.00015604	-0.26727	-0.00012863	481.2894977117592	94.279	2.0029	92.384	92.102	94.105	-1.8956					90	39	4	0	0	0	0.074342	3	6083	6077;6083;6089		104.75	7.5943	1	1009700			34200	8350	28143	28170	37710;37711;37712	37711					0.08255832453994572
LPYKAGLSL	9	Unmodified	_LPYKAGLSL_					0	0	0		nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;ENST00000465814.5_1_11:72407932-72423670:-|nuORF;nc|ENSG00000186635|Q96P48-7|ARAP1;nc|ENSG00000186635|Q96P48-5|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.29046630859375	2	481.289485	960.564418	-0.6756	-0.00032516	0.28739	0.00013832	-0.38821	-0.00018684	481.2894430163372	94.885	1.8627	92.416	92.11	93.972	-2.4685					87	36	4	0	0	0	0.3076	1	8337	8337		62.107	1.1355	1	864590			34201	8350	28143	28170	37713	37713					0.08255832453994572
LPYKGGNTL	9	Unmodified	_LPYKGGNTL_					0	0	0		nc|ENSG00000111799|Q99715-4|COL12A1;ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-2|COL12A1;ENST00000432943.6_1_8:121160081-121289735:+|nuORF;nc|ENSG00000187955|Q05707-2|COL14A1;ENSG00000187955|ENST00000297848|COL14A1	nc|ENSG00000111799|Q99715-4|COL12A1;ENST00000432943.6_1_8:121160081-121289735:+|nuORF	nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.76983642578125	2	481.768917	961.523281	-1.0876	-0.00052397	0.94065	0.00045317	-0.14695	-7.0795E-05	481.76924664079263	66.122	2.1092	62.633	62.126	64.235	-3.4898					85	42	4	0	0	0	0.068524	1	4796	4796		108.09	22.728	1	1312700			34202	2854;8443	28144	28171	37714	37714					0.04098071414523474
LPYLSQEVR	9	Unmodified	_LPYLSQEVR_					0	0	0		ENST00000592414.1_1_19:3055403-3056603:-|nuORF	ENST00000592414.1_1_19:3055403-3056603:-|nuORF	ENST00000592414.1_1_19:3055403-3056603:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.8310546875	2	552.806031	1103.59751	2.1206	0.0011723	4.4673	0.0024695	6.5878	0.0036418	553.3099440544935	77.232	0.45908	77.232	77.002	77.461	0					19	10	3	0	0	0	0.027448	1	7751	7751		27.882	0	1	405550			34203	14136	28145	28172	37715	37715					0.04985414506040797
LPYLVPEV	8	Unmodified	_LPYLVPEV_					0	0	0			REV__ENSG00000187240|ENST00000375735|DYNC2H1	REV__ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.80084228515625	2	465.270761	928.52697	-0.64269	-0.00029903	4.3408	0.0020196	3.6981	0.0017206	465.2706749428644	41.853	0.56219	41.853	41.594	42.156	0					16	12	2	0	0	0	0.028476	1	2654	2654		20.482	10.217	1	37571	+		34204	22636	28146	28173	37716	37716					0.059847411883765744
LPYPRQGI	8	Unmodified	_LPYPRQGI_					0	0	0			REV__ENSG00000266094|ENST00000579436|RASSF5	REV__ENSG00000266094|ENST00000579436|RASSF5	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.2718811035156	2	472.271627	942.528701	-0.98681	-0.00046604	0.83799	0.00039576	-0.14882	-7.0283E-05	472.2718773301271	107.41	1.1901	105.53	105.22	106.41	-1.8785					53	23	3	0	0	0	0.60486	1	9816	9816		62.978	2.0065	1	352760	+		34205	23586	28147	28174	37717	37717					0.05513794997000332
LQAARPRRI	9	Unmodified	_LQAARPRRI_					0	0	0		nc|ENSG00000124126|Q8TCU6-3|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	MULTI-MSMS	OvCa9_classI_Rep2	2	540.8414916992188	2	540.841074	1079.66759	-0.50813	-0.00027482	0.34342	0.00018574	-0.16471	-8.9083E-05	540.8411675935439	31.395	0.98717	28.685	28.494	29.481	-2.7097					43	19	3	0	0	0	0.61208	1	957	957		30.504	0	1	162100			34206	14997	28148	28175	37718	37718					0.13094757685189506
LQACKRAVMDV	11	Unmodified	_LQACKRAVMDV_					0	0	0			REV__tr|A0A7D6VPQ2|A0A7D6VPQ2_9CLOTGlycylradicalproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17730PE=4SV=1	REV__tr|A0A7D6VPQ2|A0A7D6VPQ2_9CLOTGlycylradicalproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17730PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	617.322998046875	2	617.32575	1232.63695	-1.2763	-0.00078789	-4.3764	-0.0027017	-5.6527	-0.0034895	617.3229470438988	48.947	1.402	45.84	45.399	46.801	-3.1077					61	26	3	0	0	0	0.70142	1	2729	2729		29.17	2.4771	1	217060	+		34207	31266	28149	28176	37719	37719					0.02993475193602535
LQACKRAVMDV	11	Unmodified	_LQACKRAVMDV_					0	0	0			REV__tr|A0A7D6VPQ2|A0A7D6VPQ2_9CLOTGlycylradicalproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17730PE=4SV=1	REV__tr|A0A7D6VPQ2|A0A7D6VPQ2_9CLOTGlycylradicalproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17730PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	617.32575	1232.63695	-1.3401	-0.0008273	-4.7339	-0.0029224	-6.0741	-0.0037497	617.3226537680747	48.359	0.99594	45.649	45.331	46.326	-2.7097	-0.095169	-0.00018205	NaN	29.17	46	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63057	+		34208	31266	28149	28176							0.02993475193602535
LQACKRAVMDV	11	Unmodified	_LQACKRAVMDV_					0	0	0			REV__tr|A0A7D6VPQ2|A0A7D6VPQ2_9CLOTGlycylradicalproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17730PE=4SV=1	REV__tr|A0A7D6VPQ2|A0A7D6VPQ2_9CLOTGlycylradicalproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17730PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	617.32575	1232.63695	-1.2763	-0.00078789	-4.3764	-0.0027017	-5.6527	-0.0034895	617.3229470438988	48.947	1.402	45.84	45.399	46.801	-3.1077	0.095169	0.00025938	NaN	29.17	61	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217060	+		34209	31266	28149	28176							0.02993475193602535
LQADGVYLNK	10	Unmodified	_LQADGVYLNK_					0	0	0		ENSG00000145832|ENST00000681962|SLC25A48	ENSG00000145832|ENST00000681962|SLC25A48	ENSG00000145832|ENST00000681962|SLC25A48	MULTI-SECPEP	OvCa9_classI_Rep4_	4	560.3184814453125	2	560.803488	1119.59242	-0.40068	-0.0002247	2.6102	0.0014638	2.2095	0.0012391	560.8046246039942	50.489	1.5475	47.347	46.507	48.054	-3.1416					69	29	4	0	0	0	0.026968	1	2813	2813		36.447	10.873	1	86659			34210	5246	28150	28177	37720	37720					0.03741110643431966
LQADGVYLNK	10	Unmodified	_LQADGVYLNK_					0	0	0		ENSG00000145832|ENST00000681962|SLC25A48	ENSG00000145832|ENST00000681962|SLC25A48	ENSG00000145832|ENST00000681962|SLC25A48	MULTI-MATCH	OvCa9_classI_Rep2	2		2	560.803488	1119.59242	-0.61652	-0.00034575	3.2368	0.0018152	2.6203	0.0014695	560.8055624808836	50.15	1.0427	47.356	46.637	47.68	-2.794	0.0043888	0.000476	NaN	44.377	32	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27288			34211	5246	28150	28177							0.03741110643431966
LQAEFGNY	8	Unmodified	_LQAEFGNY_					0	0	0		ENSG00000170324|ENST00000374201|FRMPD2;nc|ENSG00000170324|Q68DX3-2|FRMPD2	ENSG00000170324|ENST00000374201|FRMPD2	ENSG00000170324|ENST00000374201|FRMPD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.2562255859375	2	471.2218	940.429047	0.45282	0.00021338	2.1465	0.0010115	2.5993	0.0012248	471.2224502739494	46.046	0.57127	46.046	45.754	46.326	0					19	12	3	0	0	0	0.028476	1	3256	3256		24.203	0	1	306760			34212	7094	28151	28178	37721	37721					-0.043550674076186624
LQAEFGNY	8	Unmodified	_LQAEFGNY_					0	0	0		ENSG00000170324|ENST00000374201|FRMPD2;nc|ENSG00000170324|Q68DX3-2|FRMPD2	ENSG00000170324|ENST00000374201|FRMPD2	ENSG00000170324|ENST00000374201|FRMPD2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	471.2218	940.429047	-0.94234	-0.00044405	-3.6671	-0.001728	-4.6094	-0.0021721	471.21994422884956	49.105	0.3155	45.964	45.78	46.095	-3.1416	-0.041161	-0.0013362	NaN	31.955	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14487			34213	7094	28151	28178							-0.043550674076186624
LQAEGPVQESR	11	Unmodified	_LQAEGPVQESR_					0	0	0		ENSG00000066056|ENST00000372476|TIE1;ENST00000473014.1_1_1:43779426-43783109:+|nuORF;ENST00000461061.1_1_1:43778861-43780134:+|nuORF;ENST00000471187.1_1_1:43778861-43779798:+|nuORF	ENSG00000066056|ENST00000372476|TIE1	ENSG00000066056|ENST00000372476|TIE1	MULTI-MSMS	OvCa9_classI_Rep4_	4	607.313232421875	2	607.312209	1212.60986	1.1671	0.00070881	-3.565	-0.0021651	-2.3979	-0.0014563	607.310005002933	89.7	1.9611	87.125	86.559	88.52	-2.575					96	38	3	0	0	0	0.69424	1	7749	7749		31.634	0	1	823340			34214	1342	28152	28179	37722	37722					0.012064061784258229
LQAFPCLCGT	10	Unmodified	_LQAFPCLCGT_					0	0	0		ENST00000372409.7_1_20:44566131-44566203:+|nuORF	ENST00000372409.7_1_20:44566131-44566203:+|nuORF	ENST00000372409.7_1_20:44566131-44566203:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.7567138671875	2	526.748813	1051.48307	-1.187	-0.00062523	-2.919	-0.0015376	-4.1059	-0.0021628	526.7471745841193	48.456	0.72095	45.349	44.988	45.709	-3.1077					19	13	2	0	0	0	0.026915	1	2645	2645		27.882	0	1	25171			34215	10979	28153	28180	37723	37723					-0.04060934571907637
LQAGCGALSIR	11	Unmodified	_LQAGCGALSIR_					0	0	0			REV__ENSG00000172457|ENST00000641668|OR9G4	REV__ENSG00000172457|ENST00000641668|OR9G4	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.8178100585938	2	544.797683	1087.58081	1.099	0.00059875	0.18992	0.00010347	1.289	0.00070222	544.7979454906341	83.39	0.46349	83.39	83.293	83.757	0					13	10	2	0	0	0	0.025457	1	8686	8686		29.17	0.020503	1	209430	+		34216	21699	28154	28181	37724	37724					0.040525903484194714
LQAGCGALSIR	11	Unmodified	_LQAGCGALSIR_					0	0	0			REV__ENSG00000172457|ENST00000641668|OR9G4	REV__ENSG00000172457|ENST00000641668|OR9G4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	544.797683	1087.58081	-1.8077	-0.00098485	6.5421	0.0035641	4.7344	0.0025793	544.8015680879573	84.852	2.1057	83.305	82.848	84.954	-1.5462	-0.17246	0.00077515	NaN	27.047	64	41	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175050	+		34217	21699	28154	28181							0.040525903484194714
LQAGCGALSIR	11	Unmodified	_LQAGCGALSIR_					0	0	0			REV__ENSG00000172457|ENST00000641668|OR9G4	REV__ENSG00000172457|ENST00000641668|OR9G4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	544.797683	1087.58081	-1.2066	-0.00065735	6.2727	0.0034173	5.0661	0.00276	544.8010911017152	85.848	1.4033	83.627	83.084	84.488	-2.2204	0.14957	0.00048157	NaN	27.047	54	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	491180	+		34218	21699	28154	28181							0.040525903484194714
LQAGCGALSIR	11	Unmodified	_LQAGCGALSIR_					0	0	0			REV__ENSG00000172457|ENST00000641668|OR9G4	REV__ENSG00000172457|ENST00000641668|OR9G4	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	544.797683	1087.58081	0.75844	0.0004132	3.9974	0.0021778	4.7558	0.002591	544.7998739450713	86.235	1.1861	83.588	83.293	84.48	-2.6463	0.11062	-0.0019976	NaN	27.047	45	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	415460	+		34219	21699	28154	28181							0.040525903484194714
LQAIIWRSP	9	Unmodified	_LQAIIWRSP_					0	0	0		ENST00000534529.5_1_11:117094552-117094699:-|nuORF	ENST00000534529.5_1_11:117094552-117094699:-|nuORF	ENST00000534529.5_1_11:117094552-117094699:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.8555297851562	2	542.319109	1082.62366	-1.7685	-0.0009591	-2.2797	-0.0012363	-4.0482	-0.0021954	542.3179533383553	52.165	0.64547	49.353	48.996	49.642	-2.8129					19	12	2	0	0	0	0.027462	1	3433	3433		29.15	0	1	26922			34220	13358	28155	28182	37725	37725					0.08565728468170164
LQAINQSLI	9	Unmodified	_LQAINQSLI_					0	0	0			REV__nc|ENSG00000054282|Q86SQ7-3|SDCCAG8	REV__nc|ENSG00000054282|Q86SQ7-3|SDCCAG8	MULTI-MSMS	OvCa9_classI_Rep3	3	500.2962646484375	2	500.295299	998.576045	-0.84121	-0.00042085	0.51437	0.00025734	-0.32684	-0.00016352	500.29556807298985	88.017	1.3011	85.886	85.545	86.846	-2.1309					70	25	4	0	0	0	0.27001	1	5329	5329		66.429	2.222	1	577510	+		34221	16700	28156	28183	37726	37726					0.07670029477333173
LQAKKEIFV	9	Unmodified	_LQAKKEIFV_					0	0	0			REV__ENST00000577104.1_1_17:52555182-52555515:+|nuORF	REV__ENST00000577104.1_1_17:52555182-52555515:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	538.3256225585938	2	538.329142	1074.64373	-5.6218	-0.0030264	1.9414	0.0010451	-3.6804	-0.0019813	538.3300395836094	158.87	1.4268	157.61	157.3	158.73	-1.267					79	27	5	0	0	0	0.68424	1	13732	13732		21.96	1.4781	1	528870	+		34222	19255	28157	28184	37727	37727					0.10939479408125408
LQALATGTGQ	10	Unmodified	_LQALATGTGQ_					0	0	0		ENST00000400762.7_1_4:1198785-1202445:-|nuORF	ENST00000400762.7_1_4:1198785-1202445:-|nuORF	ENST00000400762.7_1_4:1198785-1202445:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	480.2740783691406	2	480.261456	958.50836	0.43761	0.00021017	-0.28364	-0.00013622	0.15397	7.3946E-05	480.2612540514853	80.137	1.5237	77.797	77.002	78.526	-2.3399					56	29	3	0	0	0	0.026739	1	4302	4302		53.089	22.585	1	187590			34223	11412	28158	28185	37728	37728					0.027445795465496303
LQALFLHNP	9	Unmodified	_LQALFLHNP_					0	0	0			REV__ROBO1|p.C1437Sfs*15|1|0.21|ENSG00000169855|chr3:78614773-78614774|-/TG|frameshift_variant	REV__ROBO1|p.C1437Sfs*15|1|0.21|ENSG00000169855|chr3:78614773-78614774|-/TG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.81396484375	2	526.798009	1051.58147	-1.1808	-0.00062205	-2.8474	-0.0015	-4.0282	-0.0021221	526.7961986682998	27.385	0.19986	27.385	27.291	27.491	0					5	3	2	0	0	0	0.027462	1	796	796		23.042	0	1	20517	+		34224	21489	28159	28186	37729	37729					0.05773753059793307
LQALSRIKS	9	Unmodified	_LQALSRIKS_					0	0	0		tr|A0A7D6ZTD2|A0A7D6ZTD2_9CLOTCyanophycinsynthetaseOS=ClostridiumintestinaleOX=36845GN=cphAPE=3SV=1	tr|A0A7D6ZTD2|A0A7D6ZTD2_9CLOTCyanophycinsynthetaseOS=ClostridiumintestinaleOX=36845GN=cphAPE=3SV=1	tr|A0A7D6ZTD2|A0A7D6ZTD2_9CLOTCyanophycinsynthetaseOS=ClostridiumintestinaleOX=36845GN=cphAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.2810974121094	2	508.316566	1014.61858	-1.3334	-0.00067781	-1.8699	-0.00095052	-3.2034	-0.0016283	508.3158223129501	45.102	0.46576	42.064	41.816	42.281	-3.0385					12	8	2	0	0	0	0.027462	1	2285	2285		17.468	0.99486	1	12200			34225	35752	28160	28187	37730	37730					0.1118542460557137
LQANILGL	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LQANILGL_					1	0	0		ENST00000565736.1_1_16:29816577-29816628:+|nuORF	ENST00000565736.1_1_16:29816577-29816628:+|nuORF	ENST00000565736.1_1_16:29816577-29816628:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	442.2674560546875	2	442.26601	882.517468	-0.55069	-0.00024355	0.38544	0.00017047	-0.16526	-7.3087E-05	442.26593561826763	62.879	2.7177	59.421	58.57	61.288	-3.4577					114	55	4	0	0	0	0.57878	1	4365	4365		68.485	10.673	1	936690			34226	13827	28161	28188	37731	37731					0.07150972902843478
LQAPLELR	8	Unmodified	_LQAPLELR_					0	0	0			REV__ENSG00000177354|ENST00000374144|C10orf71	REV__ENSG00000177354|ENST00000374144|C10orf71	MULTI-MSMS	OvCa99_classI_Rep5	1	470.2867126464844	2	470.284734	938.554916	3.1575	0.0014849	-0.77532	-0.00036462	2.3822	0.0011203	470.2842487267044	102.45	0.85205	102.45	102.12	102.98	0					47	19	3	0	0	0	0.57336	1	11412	11412		69.628	10.846	1	1462200	+		34227	22000	28162	28189	37732	37732					0.08318064168474848
LQAQQRQHEIN	11	Unmodified	_LQAQQRQHEIN_					0	0	0		nc|ENSG00000166272|Q9NX94|WBP1L;ENSG00000166272|ENST00000448841|WBP1L	nc|ENSG00000166272|Q9NX94|WBP1L	nc|ENSG00000166272|Q9NX94|WBP1L	MULTI-SECPEP	OvCa9_classI_Rep2	2	455.2431335449219	3	455.572496	1363.69566	0.69455	0.00031642	-0.89563	-0.00040802	-0.20107	-9.1603E-05	455.5719630776549	57.581	1.0496	54.789	54.526	55.576	-2.792					40	20	3	0	0	0	0.02595	1	4167	4167		33.039	2.4705	1	64559			34228	6659	28163	28190	37733	37733					0.028359910839753866
LQAQYKDI	8	Unmodified	_LQAQYKDI_					0	0	0			REV__DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	REV__DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.80975341796875	2	489.766374	977.518196	0.29975	0.00014681	0.85891	0.00042067	1.1587	0.00056748	489.7665205545621	63.463	0.71596	63.463	63.219	63.935	0					36	17	4	0	0	0	0.028476	1	5764	5764		40.573	0	1	1045400	+		34229	16340	28164	28191	37734	37734					0.028537675519032746
LQARDADPEVL	11	Unmodified	_LQARDADPEVL_					0	0	0		ENSG00000070269|ENST00000261556|TMEM260	ENSG00000070269|ENST00000261556|TMEM260	ENSG00000070269|ENST00000261556|TMEM260	MULTI-MSMS	OvCa99_classI_Rep5	1	613.8233642578125	2	613.822409	1225.63027	1.9793	0.001215	-1.8152	-0.0011142	0.16417	0.00010077	613.8211310976798	83.462	8.351	83.462	82.264	90.615	0					423	201	4	0	0	0	0.61375	1	8909	8909		20.837	0	1	13312000			34230	1423	28165	28192	37735	37735					0.02647576838239729
LQARGTPQGGQ	11	Unmodified	_LQARGTPQGGQ_					0	0	0		ENST00000542061.2_2_12:133087598-133088183:+|nuORF	ENST00000542061.2_2_12:133087598-133088183:+|nuORF	ENST00000542061.2_2_12:133087598-133088183:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	556.7954711914062	2	556.793986	1111.57342	-0.6538	-0.00036403	3.9692	0.00221	3.3154	0.001846	556.7958319799014	114.91	1.3325	113.85	113.55	114.88	-1.055					67	26	4	0	0	0	0.5804	1	8527	8527		46.457	7.2039	1	182980			34231	13472	28166	28193	37736	37736					0.022095740723898416
LQARNFLLL	9	Unmodified	_LQARNFLLL_					0	0	0			REV__nc|ENSG00000161681|Q9Y566-3|SHANK1	REV__nc|ENSG00000161681|Q9Y566-3|SHANK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.2577514648438	2	544.334759	1086.65496	2.7561	0.0015002	1.8502	0.0010071	4.6062	0.0025073	544.3356894268721	99.184	0.61266	99.184	98.916	99.529	0					30	14	3	0	0	0	0.027462	1	10940	10940		47.916	9.1095	1	523490	+		34232	20703	28167	28194	37737	37737					0.11510301502289622
LQARSKHILST	11	Unmodified	_LQARSKHILST_					0	0	0		ENST00000379096.9_2_8:80950218-80950317:-|nuORF	ENST00000379096.9_2_8:80950218-80950317:-|nuORF	ENST00000379096.9_2_8:80950218-80950317:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.1865539550781	3	418.582333	1252.72517	-0.06315	-2.6433E-05	0.22449	9.3968E-05	0.16134	6.7535E-05	418.91680310729214	29.231	0.25011	29.231	29.037	29.288	0					6	4	2	0	0	0	0.02595	1	1014	1014		21.032	9.5776	1	9373.3			34233	11119	28168	28195	37738	37738					0.10891555100101868
LQASVYFND	9	Unmodified	_LQASVYFND_					0	0	0			REV__ENST00000375857.6_1_13:109445985-109707944:+|nuORF	REV__ENST00000375857.6_1_13:109445985-109707944:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.84033203125	2	528.753464	1055.49238	0.53312	0.00028189	0.49727	0.00026293	1.0304	0.00054482	528.7535759213853	101.42	0.54371	101.42	101.23	101.78	0					20	12	2	0	0	0	0.027462	1	11284	11284		20.947	0	1	285650	+		34234	16632	28169	28196	37739	37739					-0.03315126690381476
LQATRWHA	8	Unmodified	_LQATRWHA_					0	0	0			REV__ENST00000356721.3_1_16:48399534-48399783:-|nuORF	REV__ENST00000356721.3_1_16:48399534-48399783:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.2966613769531	2	491.764501	981.514448	0.42822	0.00021058	-1.7514	-0.0008613	-1.3232	-0.00065072	491.763555461431	97.817	1.1273	96.858	96.365	97.492	-0.95857					39	22	3	0	0	0	0.028476	1	8869	8869		47.916	1.1492	1	30227	+		34235	24769	28170	28197	37740	37740					0.022951425686983384
LQATRWHA	8	Unmodified	_LQATRWHA_					0	0	0			REV__ENST00000356721.3_1_16:48399534-48399783:-|nuORF	REV__ENST00000356721.3_1_16:48399534-48399783:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	491.764501	981.514448	1.7601	0.00086558	-0.31893	-0.00015684	1.4412	0.00070874	491.7640509735757	96.796	0.46674	96.796	96.584	97.05	0	-0.03466	0.0007885	NaN	47.916	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	521820	+		34236	24769	28170	28197							0.022951425686983384
LQATSREEAAK	11	Unmodified	_LQATSREEAAK_					0	0	0		NR1I2|p.P191T|1|0.1|ENSG00000144852|chr3:119812737-119812737|C/A|missense_variant	NR1I2|p.P191T|1|0.1|ENSG00000144852|chr3:119812737-119812737|C/A|missense_variant	NR1I2|p.P191T|1|0.1|ENSG00000144852|chr3:119812737-119812737|C/A|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	401.8833923339844	3	401.882448	1202.62551	0.74788	0.00030056	-0.63354	-0.00025461	0.11434	4.595E-05	401.88216177708034	25.552	0.65047	25.552	25.342	25.992	0					36	12	5	0	0	0	0.52474	1	578	578		53.013	16.695	1	486140			34237	15437	28171	28198	37741	37741					0.03230692695478865
LQAWADIREQA	11	Unmodified	_LQAWADIREQA_					0	0	0			REV__nc|ENSG00000159140|P18583-2|SON	REV__nc|ENSG00000159140|P18583-2|SON	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.7712097167969	3	434.226326	1299.65715	-0.4047	-0.00017573	3.3214	0.0014422	2.9167	0.0012665	434.2277913567656	42.992	0.41925	39.984	39.696	40.115	-3.0074					12	7	2	0	0	0	0.025995	1	2025	2025		29.551	2.5034	1	10804	+		34238	20598	28172	28199	37742	37742					0.019306854494288928
LQAWTPPE	8	Unmodified	_LQAWTPPE_					0	0	0			REV__nc|ENSG845|O71037|ERVK-19_env	REV__nc|ENSG845|O71037|ERVK-19_env	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.7987060546875	2	471.239993	940.465432	1.1589	0.00054611	0.094209	4.4395E-05	1.2531	0.00059051	471.2399835709421	123.73	0.3589	123.73	123.61	123.97	0					10	7	2	0	0	0	0.028476	1	14295	14295		51.335	7.2187	1	53447	+		34239	29233	28173	28200	37743	37743					-0.007181905109177933
LQAYDFYYLFQ	11	Unmodified	_LQAYDFYYLFQ_					0	0	0		ENSG00000139131|ENST00000324868|YARS2	ENSG00000139131|ENST00000324868|YARS2	ENSG00000139131|ENST00000324868|YARS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.9234313964844	3	490.902849	1469.68672	-0.77726	-0.00038156	1.0433	0.00051217	0.26606	0.00013061	491.2368940819693	61.561	0.57999	61.561	61.458	62.038	0					14	13	2	0	0	0	0.026033	1	5470	5470		17.167	0	1	381420			34240	4742	28174	28201	37744	37744					-0.029337953251115323
LQCCFTKL	8	Unmodified	_LQCCFTKL_					0	0	0			REV__ENST00000537589.1_2_2:65301228-65301667:+|nuORF	REV__ENST00000537589.1_2_2:65301228-65301667:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.3003845214844	2	478.240624	954.466695	0.70839	0.00033878	-1.6266	-0.00077791	-0.91822	-0.00043913	478.2397316498567	87.217	1.0015	85.786	85.334	86.335	-1.4311					28	19	2	0	0	0	0.028476	1	7561	7561		47.916	0	1	32676	+		34241	27311	28175	28202	37745	37745					-0.012360157380157943
LQCDAPIIK	9	Unmodified	_LQCDAPIIK_					0	0	0		nc|ENSG00000121446|A5PLK6-4|RGSL1;nc|ENSG00000121446|A5PLK6-5|RGSL1;nc|ENSG00000121446|A5PLK6-3|RGSL1;nc|ENSG00000121446|A5PLK6-2|RGSL1;ENSG00000121446|ENST00000294854|RGSL1	nc|ENSG00000121446|A5PLK6-4|RGSL1	nc|ENSG00000121446|A5PLK6-4|RGSL1	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.3017272949219	2	500.778428	999.542302	-1.4815	-0.00074191	0.29843	0.00014945	-1.1831	-0.00059247	500.77836244719884	102.1	2.2733	101.34	100.62	102.89	-0.76401					75	45	2	0	0	0	0.027118	1	9505	9505		84.916	0	1	168460			34242	3485	28176	28203	37746	37746					0.04251284713916448
LQCGRQAY	8	Unmodified	_LQCGRQAY_					0	0	0			REV__ENST00000478856.5_1_3:100065035-100067726:+|nuORF	REV__ENST00000478856.5_1_3:100065035-100067726:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	469.27740478515625	2	469.729269	937.443985	0.13114	6.1599E-05	1.517	0.00071257	1.6481	0.00077417	469.7296894587681	98.761	0.77347	97.076	96.801	97.574	-1.685					20	14	2	0	0	0	0.028476	1	6611	6611		20.482	0	1	25013	+		34243	18175	28177	28204	37747	37747					-0.027238988112799234
LQCGRQAY	8	Unmodified	_LQCGRQAY_					0	0	0			REV__ENST00000478856.5_1_3:100065035-100067726:+|nuORF	REV__ENST00000478856.5_1_3:100065035-100067726:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	469.729269	937.443985	-0.37466	-0.00017599	1.8805	0.00088334	1.5059	0.00070735	469.7300049265645	98.278	0.4381	97.385	97.12	97.558	-0.89305	0.22442	0.00077963	NaN	12.959	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9304.9	+		34244	18175	28177	28204							-0.027238988112799234
LQCKPLKYKV	10	Unmodified	_LQCKPLKYKV_					0	0	0		ENSG00000182752|ENST00000328252|PAPPA;PAPPA|p.H1031Qfs*38|1|0.03|ENSG00000182752|chr9:116302895-116302896|-/GAACTTGGAAAGTGAATGCCTGAGT|frameshift_variant	ENSG00000182752|ENST00000328252|PAPPA	ENSG00000182752|ENST00000328252|PAPPA	MULTI-MSMS	OvCa99_classI_Rep5	1	407.24774169921875	3	407.245893	1218.71585	1.0729	0.00043692	1.5998	0.00065152	2.6727	0.0010884	407.2463858432237	30.393	0.64481	30.393	30.186	30.831	0					30	12	4	0	0	0	0.66944	1	1166	1166		33.922	0	1	156480			34245	8022	28178	28205	37748	37748					0.11524070490168015
LQDAIHQRAS	10	Unmodified	_LQDAIHQRAS_					0	0	0			REV__nc|ENSG00000144406|Q8N2C7-7|UNC80	REV__nc|ENSG00000144406|Q8N2C7-7|UNC80	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2774047851562	2	569.801811	1137.58907	1.8694	0.0010652	2.1645	0.0012333	4.0338	0.0022985	569.8029187419148	98.649	1.0489	98.649	97.867	98.916	0					31	24	2	0	0	0	0.026826	1	10891	10891		29.17	0.020503	1	593740	+		34246	19910	28179	28206	37749	37749					0.02577860589417469
LQDAQPNVE	9	Unmodified	_LQDAQPNVE_					0	0	0			REV__nc|ENSG00000162897|Q8WWV6|FCAMR	REV__nc|ENSG00000162897|Q8WWV6|FCAMR	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.84698486328125	2	507.248546	1012.48254	-0.5765	-0.00029243	0.21014	0.00010659	-0.36636	-0.00018584	507.2485625067598	41.611	0.64883	41.611	41.375	42.024	0					39	14	5	0	0	0	0.027402	1	2594	2594		56.721	28.839	1	914020	+		34247	20790	28180	28207	37750	37750					-0.02320314695759862
LQDAQPNVE	9	Unmodified	_LQDAQPNVE_					0	0	0			REV__nc|ENSG00000162897|Q8WWV6|FCAMR	REV__nc|ENSG00000162897|Q8WWV6|FCAMR	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	507.248546	1012.48254	-1.3813	-0.00070068	-6.2567	-0.0031737	-7.638	-0.0038744	507.24495352356337	44.477	0.20547	41.439	41.258	41.464	-3.0385	-0.08634	-0.0063755	NaN	56.721	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12997	+		34248	20790	28180	28207							-0.02320314695759862
LQDLEPEDP	9	Unmodified	_LQDLEPEDP_					0	0	0		ENST00000559327.1_1_15:65676349-65688574:-|nuORF;nc|ENSG00000103742|Q8TDY8-2|IGDCC4;ENSG00000103742|ENST00000352385|IGDCC4;ENST00000558048.5_1_15:65676349-65677832:-|nuORF	ENST00000559327.1_1_15:65676349-65688574:-|nuORF;ENST00000558048.5_1_15:65676349-65677832:-|nuORF	ENST00000559327.1_1_15:65676349-65688574:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.31689453125	2	528.248212	1054.48187	-0.99272	-0.0005244	-0.25125	-0.00013272	-1.244	-0.00065712	528.2481972432186	66.058	0.15199	66.058	65.984	66.136	0					5	3	2	0	0	0	0.027462	1	6100	6100		15.642	0	1	144550			34249	2340;13692	28181	28208	37751	37751					-0.04319154135464487
LQDLIIALQ	9	Unmodified	_LQDLIIALQ_					0	0	0		ENSG00000173572|ENST00000342929|NLRP13	ENSG00000173572|ENST00000342929|NLRP13	ENSG00000173572|ENST00000342929|NLRP13	MULTI-MSMS	OvCa9_classI_Rep2	2	513.8129272460938	2	513.813325	1025.6121	0.034126	1.7535E-05	-0.62139	-0.00031928	-0.58727	-0.00030175	513.812915073237	95.614	2.7183	94.586	93.824	96.542	-1.0281					131	54	4	0	0	0	0.083631	1	8614	8614		101.6	2.9713	1	975360			34250	7390	28182	28209	37752	37752					0.10031486654179389
LQDLLRQVT	9	Unmodified	_LQDLLRQVT_					0	0	0			REV__ARHGAP20|p.R479G|1|0.18|ENSG00000137727|chr11:110583718-110583718|T/C|missense_variant	REV__ARHGAP20|p.R479G|1|0.18|ENSG00000137727|chr11:110583718-110583718|T/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	543.7938842773438	2	543.319306	1084.62406	-0.52948	-0.00028768	-0.25494	-0.00013851	-0.78442	-0.00042619	543.3193308378192	106.61	1.3849	106.3	105.88	107.26	-0.30836					58	27	3	0	0	0	0.027462	1	9963	9963		31.53	0	1	144050	+		34251	15652	28183	28210	37753	37753					0.08513103397376653
LQDMNAMVL	9	Unmodified	_LQDMNAMVL_					0	0	0		ENSG00000203989|ENST00000371402|RHOXF2B;ENSG00000131721|ENST00000371388|RHOXF2	ENSG00000203989|ENST00000371402|RHOXF2B	ENSG00000203989|ENST00000371402|RHOXF2B	MULTI-MSMS	OvCa9_classI_Rep2	2	517.752685546875	2	517.754095	1033.49364	-0.29917	-0.0001549	-0.15648	-8.1019E-05	-0.45565	-0.00023591	517.7538652131407	98.693	2.8202	97.8	96.974	99.794	-0.89305					121	56	5	0	0	0	0.21231	1	8988	8988		74.255	16.025	1	771510			34252	4084	28184	28211	37754	37754					-0.021769519174767993
LQDQLEQI	8	Unmodified	_LQDQLEQI_					0	0	0			REV__tr|A0A553SG18|A0A553SG18_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09940PE=4SV=1	REV__tr|A0A553SG18|A0A553SG18_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09940PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.80584716796875	2	493.761289	985.508025	-0.03979	-1.9647E-05	0.86094	0.0004251	0.82115	0.00040545	493.7617804384883	105.39	0.52595	105.39	105.13	105.66	0					13	11	2	0	0	0	0.028476	1	11861	11861		93.195	21.318	1	211850	+		34253	29648	28185	28212	37755	37755					0.014691598266608707
LQDSMCQRDQ	10	Unmodified	_LQDSMCQRDQ_					0	0	0		ENST00000379454.8_3_8:62416035-62430116:-|nuORF	ENST00000379454.8_3_8:62416035-62430116:-|nuORF	ENST00000379454.8_3_8:62416035-62430116:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	612.2947387695312	2	612.260804	1222.50706	0.73266	0.00044858	-1.1817	-0.0007235	-0.44903	-0.00027493	612.761967256211	140.93	0.45329	140.93	140.78	141.23	0					12	8	2	0	0	0	0.027033	1	16454	16454		33.922	10.879	1	29280			34254	11125	28186	28213	37756	37756					-0.09529745876193374
LQDVRRIYKRR	11	Unmodified	_LQDVRRIYKRR_					0	0	0		ENST00000519858.1_1_8:59513803-59535956:-|nuORF;ENSG00000035681|ENST00000038176|NSMAF;nc|ENSG00000035681|Q92636-2|NSMAF	ENST00000519858.1_1_8:59513803-59535956:-|nuORF	ENST00000519858.1_1_8:59513803-59535956:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	501.63507080078125	3	501.639064	1501.89536	-5.5139	-0.002766	-4.4315	-0.002223	-9.9454	-0.004989	501.63686894791874	162.29	1.9089	162.06	160.59	162.5	-0.22696					90	37	3	0	0	0	0.72545	1	16559	16559		9.6461	3.6451	1	106580			34255	1083	28187	28214	37757	37757					0.16449090822356993
LQEAQQNKL	9	Unmodified	_LQEAQQNKL_					0	0	0			REV__ENSG00000253797|ENST00000521776|UTP14C	REV__ENSG00000253797|ENST00000521776|UTP14C	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.2930297851562	2	536.293288	1070.57202	-1.5885	-0.00085188	1.0358	0.00055549	-0.55267	-0.0002964	536.2938153986381	70.392	1.5104	66.911	66.589	68.099	-3.4812					81	30	5	0	0	0	0.1944	1	5314	5314		77.318	7.69	1	724900	+		34256	23507	28188	28215	37758	37758					0.039559399836207376
LQEAQQNKL	9	Unmodified	_LQEAQQNKL_					0	0	0			REV__ENSG00000253797|ENST00000521776|UTP14C	REV__ENSG00000253797|ENST00000521776|UTP14C	MULTI-MATCH	OvCa9_classI_Rep2	2		2	536.293288	1070.57202	-1.2534	-0.00067221	0.51082	0.00027395	-0.74261	-0.00039826	536.2935866257841	69.511	1.4503	66.891	66.416	67.866	-2.6203	-0.010085	-0.00024061	NaN	77.318	65	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164270	+		34257	23507	28188	28215							0.039559399836207376
LQEAQQNKL	9	Unmodified	_LQEAQQNKL_					0	0	0			REV__ENSG00000253797|ENST00000521776|UTP14C	REV__ENSG00000253797|ENST00000521776|UTP14C	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	536.293288	1070.57202	-1.5885	-0.00085188	1.0358	0.00055549	-0.55267	-0.0002964	536.2938153986381	70.392	1.5104	66.911	66.589	68.099	-3.4812	0.010085	0.00032247	NaN	77.318	81	30	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	724900	+		34258	23507	28188	28215							0.039559399836207376
LQECVYVR	8	Unmodified	_LQECVYVR_					0	0	0			REV__ENST00000244763.8_1_6:7289767-7289878:-|nuORF	REV__ENST00000244763.8_1_6:7289767-7289878:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.2762145996094	2	505.260402	1008.50625	2.222	0.0011227	-2.1931	-0.0011081	0.028922	1.4613E-05	505.7615423381377	84.047	0.17032	84.047	83.965	84.135	0					5	3	2	0	0	0	0.028476	1	8776	8776		18.324	0	1	52261	+		34259	23833	28189	28216	37759	37759					0.0023382753705618597
LQEELNQKLK	10	Unmodified	_LQEELNQKLK_					0	0	0			REV__ENSG00000162441|ENST00000377223|LZIC	REV__ENSG00000162441|ENST00000377223|LZIC	MULTI-MSMS	OvCa9_classI_Rep2	2	621.85498046875	2	621.856252	1241.69795	-0.53094	-0.00033017	0.13593	8.4529E-05	-0.39501	-0.00024564	621.8562878187912	70.339	1.2237	67.768	67.412	68.635	-2.5707					81	23	5	0	0	0	0.027228	1	5640	5640		106.68	0	1	789100	+		34260	20737	28190	28217	37760	37760					0.08677026769032636
LQEEMDSF	8	Unmodified	_LQEEMDSF_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.P12974Lfs*4|1|0.05|ENSG00000155657|chr2:178631204-178631205|-/GTACA|frameshift_variant;TTN|p.E11597Rfs*5|1|0.5|ENSG00000155657|chr2:178651954-178651954|A/-|frameshift_variant;TTN|p.R11195Efs*5|1|0.15|ENSG00000155657|chr2:178674318-178674318|A/-|frameshift_variant;TTN|p.E9011Nfs*14|1|0.03|ENSG00000155657|chr2:178711255-178711255|T/-|frameshift_variant;TTN|p.G8550Tfs*3|1|0.05|ENSG00000155657|chr2:178714032-178714059|ATTTGTTGTCACTTGTTAGCTCTTTTCC/-|frameshift_variant;TTN|p.S7694Qfs*32|1|0.04|ENSG00000155657|chr2:178719360-178719360|G/-|frameshift_variant;TTN|p.C7689Pfs*18|1|0.03|ENSG00000155657|chr2:178719373-178719374|CA/-|frameshift_variant;TTN|p.L7641Yfs*6|1|0.07|ENSG00000155657|chr2:178719621-178719621|T/-|frameshift_variant;TTN|p.T6904Lfs*6|1|0.08|ENSG00000155657|chr2:178723439-178723439|T/-|frameshift_variant;TTN|p.V5150Afs*3|1|0.06|ENSG00000155657|chr2:178732661-178732661|A/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.72503662109375	2	499.710408	997.406262	-0.2227	-0.00011129	2.878	0.0014382	2.6553	0.0013269	499.71206781099824	47.151	0.22345	47.151	46.985	47.208	0					6	4	2	0	0	0	0.028476	1	3359	3359		33.516	1.5607	1	40079			34261	5793;36288	28191	28218	37761	37761					-0.09254454587403416
LQEFGPISY	9	Unmodified	_LQEFGPISY_					0	0	0		ENSG00000104824|ENST00000221419|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF	ENSG00000104824|ENST00000221419|HNRNPL	ENSG00000104824|ENST00000221419|HNRNPL	MULTI-MSMS	OvCa99_classI_Rep5	1	527.2681274414062	2	527.266207	1052.51786	2.2649	0.0011942	0.25869	0.0001364	2.5236	0.0013306	527.2662168481513	121.61	0.65247	121.61	121.38	122.04	0					32	13	4	0	0	0	0.075543	1	13995	13995		104.06	32.761	1	495460			34262	2394	28192	28219	37762	37762					-0.006296521679587386
LQEIEEKTPKA	11	Unmodified	_LQEIEEKTPKA_					0	0	0			REV__tr|A0A553SGB5|A0A553SGB5_NIACIDNA-3-methyladenineglycosylaseIIOS=NialliacirculansOX=1397GN=CEQ21_10530PE=4SV=1	REV__tr|A0A553SGB5|A0A553SGB5_NIACIDNA-3-methyladenineglycosylaseIIOS=NialliacirculansOX=1397GN=CEQ21_10530PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	644.3349609375	2	643.353542	1284.69253	-0.51246	-0.00032969	-2.0282	-0.0013048	-2.5406	-0.0016345	643.3521323234894	41.374	0.62191	38.393	38.179	38.801	-2.9804					18	11	2	0	0	0	0.026058	1	1883	1883		20.837	0	1	26254	+		34263	29682	28193	28220	37763	37763					0.06157303186569152
LQEIQMELDT	10	Unmodified	_LQEIQMELDT_					0	0	0			REV__CON__A2A4G1	REV__CON__A2A4G1	MULTI-MSMS	OvCa9_classI_Rep4_	4	407.2001953125	3	407.200678	1218.5802	0.55236	0.00022492	-3.4051	-0.0013866	-2.8528	-0.0011617	407.19918620698076	109.06	1.3446	107.34	107.02	108.37	-1.7256					69	25	4	0	0	0	0.73063	1	10014	10014		27.047	4.4857	1	238050	+	+	34264	16167	28194	28221	37764	37764					-0.020342938819339906
LQEKLPDEVVL	11	Unmodified	_LQEKLPDEVVL_					0	0	0		nc|ENSG00000138081|Q86XK2-6|FBXO11;ENSG00000138081|ENST00000403359|FBXO11;nc|ENSG00000138081|Q86XK2-5|FBXO11;nc|ENSG00000138081|Q86XK2-4|FBXO11;nc|ENSG00000138081|Q86XK2-3|FBXO11	nc|ENSG00000138081|Q86XK2-6|FBXO11	nc|ENSG00000138081|Q86XK2-6|FBXO11	MULTI-MSMS	OvCa99_classI_Rep5	1	641.867919921875	2	641.866285	1281.71802	0.63762	0.00040927	-1.1614	-0.00074544	-0.52375	-0.00033617	641.8655985353367	162.35	0.59143	162.35	161.97	162.56	0					34	11	4	0	0	0	0.29406	1	19026	19026		68.846	0.059317	1	6839800			34265	4656	28195	28222	37765	37765					0.08842777708991889
LQEKNNTAHT	10	Unmodified	_LQEKNNTAHT_					0	0	0			REV__ENSG00000011201|ENST00000262648|ANOS1	REV__ENSG00000011201|ENST00000262648|ANOS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.2901611328125	2	578.291276	1154.568	-6.4834	-0.0037493	2.7045	0.001564	-3.7788	-0.0021853	578.2924756503293	159.15	2.0345	157.57	156.14	158.17	-1.5858					77	57	2	0	0	0	0.72319	1	15676	15676		27.882	0.83493	1	24594	+		34266	16484	28196	28223	37766	37766					-0.00310149510141855
LQEKPTYGHSI	11	Unmodified	_LQEKPTYGHSI_					0	0	0			REV__ENST00000320415.6_1_7:82219286-82219658:-|nuORF	REV__ENST00000320415.6_1_7:82219286-82219658:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	424.8901672363281	3	424.890944	1271.651	-0.9883	-0.00041992	-1.2348	-0.00052465	-2.2231	-0.00094457	424.8904354672349	33.271	1.2911	30.562	30.321	31.612	-2.7097					77	25	4	0	0	0	0.68391	1	1173	1173		35.178	2.1388	1	615830	+		34267	24440	28197	28224	37767	37767					0.02604167217896247
LQELNKQLL	9	Unmodified	_LQELNKQLL_					0	0	0		tr|A0A553SP81|A0A553SP81_NIACIPurinenucleosidephosphorylaseOS=NialliacirculansOX=1397GN=pgeFPE=3SV=1	tr|A0A553SP81|A0A553SP81_NIACIPurinenucleosidephosphorylaseOS=NialliacirculansOX=1397GN=pgeFPE=3SV=1	tr|A0A553SP81|A0A553SP81_NIACIPurinenucleosidephosphorylaseOS=NialliacirculansOX=1397GN=pgeFPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	549.8306274414062	2	549.829506	1097.64446	2.0083	0.0011042	-0.6702	-0.0003685	1.3381	0.00073573	549.8291049728731	79.959	3.6419	79.959	79.436	83.078	0					224	87	5	0	0	0	0.070405	1	8262	8262		107.01	0	1	44234000			34268	34013	28198	28225	37768	37768					0.0995427405719056
LQELSAPLIP	10	Unmodified	_LQELSAPLIP_					0	0	0		tr|A0A553SGU5|A0A553SGU5_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11580PE=4SV=1	tr|A0A553SGU5|A0A553SGU5_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11580PE=4SV=1	tr|A0A553SGU5|A0A553SGU5_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11580PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.357421875	2	540.818607	1079.62266	-1.3344	-0.00072164	1.7219	0.00093126	0.38759	0.00020962	540.8193863900142	57.034	0.8918	54.242	53.931	54.823	-2.792					31	17	3	0	0	0	0.026734	1	4103	4103		39.253	22.78	1	35181			34269	33197	28199	28226	37769	37769					0.08603469308627609
LQELSAPLIP	10	Unmodified	_LQELSAPLIP_					0	0	0		tr|A0A553SGU5|A0A553SGU5_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11580PE=4SV=1	tr|A0A553SGU5|A0A553SGU5_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11580PE=4SV=1	tr|A0A553SGU5|A0A553SGU5_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11580PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	540.818607	1079.62266	-0.77156	-0.00041727	1.0449	0.00056511	0.27336	0.00014784	540.8189455720506	57.949	0.75454	54.604	54.393	55.148	-3.3449	0.18129	-0.00046006	NaN	31.53	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62109			34270	33197	28199	28226							0.08603469308627609
LQELSTIEFI	10	Unmodified	_LQELSTIEFI_					0	0	0		tr|A0A553SUJ1|A0A553SUJ1_NIACIHydroxyaciddehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_00225PE=3SV=1	tr|A0A553SUJ1|A0A553SUJ1_NIACIHydroxyaciddehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_00225PE=3SV=1	tr|A0A553SUJ1|A0A553SUJ1_NIACIHydroxyaciddehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_00225PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.3060302734375	2	596.826629	1191.63871	-0.2126	-0.00012689	0.64237	0.00038339	0.42977	0.0002565	596.8268053540655	48.778	0.75019	48.778	48.455	49.206	0					31	16	4	0	0	0	0.027422	1	3572	3572		82.241	12.613	1	863720			34271	34615	28200	28227	37770	37770					0.05055130754885795
LQEMVPLKI	9	Unmodified	_LQEMVPLKI_					0	0	0		ENST00000421422.1_2_20:39812284-39812746:-|nuORF	ENST00000421422.1_2_20:39812284-39812746:-|nuORF	ENST00000421422.1_2_20:39812284-39812746:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.2930297851562	2	535.817553	1069.62055	-1.6169	-0.00086636	3.4942	0.0018723	1.8774	0.0010059	535.8196570318182	70.555	1.4107	67.074	66.787	68.198	-3.4812					42	28	2	0	0	0	0.027447	1	5314	5314		66.429	18.772	1	67790			34272	11682	28201	28228	37771	37771					0.08852717299146207
LQENVEFLN	9	Unmodified	_LQENVEFLN_					0	0	0		tr|A0A7D6VNA8|A0A7D6VNA8_9CLOTZincribbondomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14540PE=4SV=1	tr|A0A7D6VNA8|A0A7D6VNA8_9CLOTZincribbondomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14540PE=4SV=1	tr|A0A7D6VNA8|A0A7D6VNA8_9CLOTZincribbondomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14540PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.7836303710938	2	553.279846	1104.54514	-0.80074	-0.00044303	3.9358	0.0021776	3.1351	0.0017346	553.2825223850615	54.727	1.9925	51.48	50.722	52.715	-3.2474					113	38	5	0	0	0	0.55011	1	3430	3430		37.812	8.662	1	383560			34273	34687	28202	28229	37772	37772					-0.0029516862757645868
LQEPEWWRMIV	11	Unmodified	_LQEPEWWRMIV_					0	0	0			REV__ENST00000228928.11_1_12:113409775-113410174:+|nuORF	REV__ENST00000228928.11_1_12:113409775-113410174:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	496.25506591796875	3	496.255228	1485.74386	-0.67257	-0.00033377	-2.6117	-0.0012961	-3.2843	-0.0016299	496.25380215037103	50.67	2.0542	50.67	50.073	52.127	0					113	47	4	0	0	0	0.71582	1	3884	3884		24.232	0.85391	1	1117600	+		34274	23778	28203	28230	37773	37773					0.02041348679586008
LQEQLSIDV	9	Unmodified	_LQEQLSIDV_					0	0	0		ENSG00000166948|ENST00000202625|TGM6	ENSG00000166948|ENST00000202625|TGM6	ENSG00000166948|ENST00000202625|TGM6	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.2578735351562	2	522.782222	1043.54989	-1.0461	-0.00054689	0.084631	4.4244E-05	-0.96149	-0.00050265	522.7823027624805	68.004	0.88911	68.004	67.803	68.692	0					58	21	4	0	0	0	0.02744	1	6384	6384		62.107	1.9892	1	3264700			34275	6740	28204	28231	37774	37774					0.02985715515183074
LQERDAEAHQ	10	Unmodified	_LQERDAEAHQ_					0	0	0			REV__ENSG00000157933|ENST00000378536|SKI	REV__ENSG00000157933|ENST00000378536|SKI	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.6956176757812	2	598.786358	1195.55816	-0.067417	-4.0368E-05	-0.99728	-0.00059716	-1.0647	-0.00063752	598.7858319069275	35.73	0.55414	35.73	35.52	36.074	0					15	11	2	0	0	0	0.026656	1	1813	1813		75.043	5.4157	1	83126	+		34276	20542	28205	28232	37775	37775					-0.03179337515507541
LQEREAPA	8	Unmodified	_LQEREAPA_					0	0	0		ENST00000360639.6_1_15:75499708-75499753:+|nuORF	ENST00000360639.6_1_15:75499708-75499753:+|nuORF	ENST00000360639.6_1_15:75499708-75499753:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	457.2409973144531	2	457.240524	912.466495	-0.48723	-0.00022278	0.59039	0.00026995	0.10316	4.7169E-05	457.24064758282594	59.127	2.0507	59.127	58.892	60.943	0					102	51	4	0	0	0	0.2826	1	5088	5088		110.34	7.5639	1	11088000			34277	10778	28206	28233	37776	37776					0.006760238579886391
LQERGLQTL	9	Unmodified	_LQERGLQTL_					0	0	0		ENST00000484122.5_1_17:12896137-12899859:-|nuORF	ENST00000484122.5_1_17:12896137-12899859:-|nuORF	ENST00000484122.5_1_17:12896137-12899859:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.2942504882812	2	529.303655	1056.59276	-1.8922	-0.0010015	2.24	0.0011856	0.3478	0.00018409	529.3043177427546	44.123	0.90498	41.116	40.891	41.796	-3.0074					51	17	4	0	0	0	0.027462	1	2240	2240		29.15	0	1	202870			34278	12593	28207	28234	37777	37777					0.0667253036326656
LQERGLQTL	9	Unmodified	_LQERGLQTL_					0	0	0		ENST00000484122.5_1_17:12896137-12899859:-|nuORF	ENST00000484122.5_1_17:12896137-12899859:-|nuORF	ENST00000484122.5_1_17:12896137-12899859:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	529.303655	1056.59276	-0.19629	-0.0001039	-0.028774	-1.523E-05	-0.22506	-0.00011913	529.3031289897974	43.991	0.59857	41.282	41.054	41.653	-2.7097	0.083089	-0.0016992	NaN	37.159	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45029			34279	12593	28207	28234							0.0667253036326656
LQERQPDL	8	Unmodified	_LQERQPDL_					0	0	0		ENSG00000138411|ENST00000644978|HECW2;ENST00000462290.1_1_2:197122524-197143302:-|nuORF	ENSG00000138411|ENST00000644978|HECW2	ENSG00000138411|ENST00000644978|HECW2	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.2527160644531	2	499.766906	997.519259	2.8832	0.0014409	3.3243	0.0016614	6.2075	0.0031023	500.2702967722875	89.737	0.58765	89.737	89.641	90.228	0					13	13	2	0	0	0	0.028476	1	9641	9641		82.305	0	1	328220			34280	4686	28208	28235	37778	37778					0.020399819208023473
LQERVDKV	8	Unmodified	_LQERVDKV_					0	0	0		ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	ENSG00000161217|ENST00000431016|PCYT1A	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3001708984375	2	493.785099	985.555644	-1.5171	-0.00074913	0.62522	0.00030872	-0.8919	-0.00044041	493.7850753575143	92.463	1.6476	90.439	90.225	91.872	-2.0241					67	33	3	0	0	0	0.028476	1	5834	5834		34.173	0	1	491040			34281	6125	28209	28236	37779	37779					0.06228858817519267
LQEVDNELKL	10	Unmodified	_LQEVDNELKL_					0	0	0			REV__nc|ENSG00000166689|Q6IQ23-3|PLEKHA7	REV__nc|ENSG00000166689|Q6IQ23-3|PLEKHA7	MULTI-MSMS	OvCa99_classI_Rep5	1	400.8877258300781	3	400.887199	1199.63977	0.15192	6.0903E-05	1.3952	0.00055933	1.5471	0.00062023	400.88768082421296	43.756	0.60218	43.756	43.521	44.123	0					45	13	5	0	0	0	0.14958	1	2910	2910		102.06	19.311	1	2005400	+		34282	27121	28210	28237	37780	37780					0.04793345123744075
LQEVDNELKL	10	Unmodified	_LQEVDNELKL_					0	0	0			REV__nc|ENSG00000166689|Q6IQ23-3|PLEKHA7	REV__nc|ENSG00000166689|Q6IQ23-3|PLEKHA7	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	400.887199	1199.63977	0.15192	6.0903E-05	1.3952	0.00055933	1.5471	0.00062023	400.88768082421296	43.756	0.60218	43.756	43.521	44.123	0	0	0	NaN	102.06	45	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2005400	+		34283	27121	28210	28237							0.04793345123744075
LQEVVRKPRAS	11	Unmodified	_LQEVVRKPRAS_					0	0	0		ENSG00000167987|ENST00000301765|VPS37C	ENSG00000167987|ENST00000301765|VPS37C	ENSG00000167987|ENST00000301765|VPS37C	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8811645507812	2	641.883136	1281.75172	-5.3554	-0.0034376	4.4876	0.0028805	-0.86781	-0.00055703	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.70142	1	12968	12968		29.17	6.5904	1	804890			34284	6860	28211	28238	37781	37781					0.12211243991418996
LQEWCSVI	8	Carbamidomethyl (C)	_LQEWC(Carbamidomethyl (C))SVI_	LQEWC(1)SVI		LQEWC(93)SVI		0	1	0		ENST00000453505.6_1_20:48741597-48767785:-|nuORF;nc|ENSG00000240849|A5PLL7-2|PEDS1;ENSG00000240849|ENST00000371652|PEDS1	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	ENST00000453505.6_1_20:48741597-48767785:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	517.7539672851562	2	517.75241	1033.49027	0.13224	6.8467E-05	2.8525	0.0014769	2.9847	0.0015453	517.7536919411586	99.533	2.2055	97.848	97.009	99.214	-1.685					97	43	4	0	0	0	0.37357	1	6715	6715		93.195	8.2799	1	863100			34285	9345	28212	28239	37782	37782	93				-0.025138786998240903
LQEYDFLSLV	10	Unmodified	_LQEYDFLSLV_					0	0	0			REV__nc|ENSG00000126822|A1L390-2|PLEKHG3	REV__nc|ENSG00000126822|A1L390-2|PLEKHG3	MULTI-MSMS	OvCa99_classI_Rep5	1	613.8228759765625	2	613.818804	1225.62306	1.9793	0.001215	4.0584	0.0024911	6.0378	0.0037061	613.8211310976798	83.462	8.351	83.462	82.264	90.615	0					423	201	4	0	0	0	0.55109	1	8854	8854		35.618	19.976	1	13312000	+		34286	18799	28213	28240	37783	37783					0.019268442378233885
LQFACCSFKIF	11	Unmodified	_LQFACCSFKIF_					0	0	0			REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|364|3|anti-sense	REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|364|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.2141418457031	3	436.215605	1305.62499	0.26482	0.00011552	-3.9367	-0.0017172	-3.6719	-0.0016017	436.2140024294141	39.204	2.2798	36.277	35.849	38.129	-2.9264					140	44	5	0	0	0	0.68299	1	1582	1582		35.496	0.34362	1	1076000	+		34287	28553	28214	28241	37784	37784					-0.015601415495893889
LQFAYLENFK	10	Unmodified	_LQFAYLENFK_					0	0	0		ENSG00000113805|ENST00000263665|CNTN3	ENSG00000113805|ENST00000263665|CNTN3	ENSG00000113805|ENST00000263665|CNTN3	MULTI-MSMS	OvCa9_classI_Rep2	2	424.8898620605469	3	424.892284	1271.65502	-0.9883	-0.00041992	-4.3907	-0.0018656	-5.379	-0.0022855	424.8904354672349	33.271	1.2911	30.562	30.321	31.612	-2.7097					77	25	4	0	0	0	0.6898	1	1198	1198		31.634	1.0654	1	615830			34288	2996	28215	28242	37785	37785					0.030062567115692218
LQFIGVKEI	9	Unmodified	_LQFIGVKEI_					0	0	0		nc|ENSG00000079931|Q6UVY6-2|MOXD1;MOXD1|p.A576Efs*33|1|0.05|ENSG00000079931|chr6:132297268-132297268|G/-|frameshift_variant;ENSG00000079931|ENST00000367963|MOXD1	nc|ENSG00000079931|Q6UVY6-2|MOXD1	nc|ENSG00000079931|Q6UVY6-2|MOXD1	MSMS	OvCa9_classI_Rep3	3	523.8151245117188	2	523.815867	1045.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.98	1	121.94	121.44	122.44	-1.0328								0	0	0	0.043201	1	9473	9473		79.713	5.4575	1				34289	1624	28216	28243	37786	37786					0.0961979051680828
LQFIHQEDL	9	Unmodified	_LQFIHQEDL_					0	0	0			REV__nc|ENSG00000174442|Q9H900-2|ZWILCH	REV__nc|ENSG00000174442|Q9H900-2|ZWILCH	MULTI-SECPEP	OvCa9_classI_Rep3	3	572.3177490234375	2	571.795663	1141.57677	-0.93207	-0.00053296	2.1467	0.0012275	1.2146	0.00069453	572.2978484821657	81.57	0.55402	79.247	78.854	79.408	-2.3226					14	10	2	0	0	0	0.027447	1	4537	4537		56.721	10.769	1	22992	+		34290	21831	28217	28244	37787	37787					0.011648241263856107
LQFIKCPFP	9	Unmodified	_LQFIKCPFP_					0	0	0		nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799|CPLANE1	nc|ENSG00000197603|Q9H799|CPLANE1	MULTI-SECPEP	OvCa9_classI_Rep2	2	545.8289184570312	2	546.799163	1091.58377	0.22453	0.00012277	-0.36854	-0.00020152	-0.14401	-7.8745E-05	546.7986635193255	96.833	1.1835	95.874	95.082	96.266	-0.95857					43	23	2	0	0	0	0.027448	1	8655	8655		44.117	14.967	1	52825			34291	8727	28218	28245	37788	37788					0.04164465473218115
LQFIVLRDWG	10	Unmodified	_LQFIVLRDWG_					0	0	0		ENST00000357037.5_1_17:40554488-40554908:-|nuORF	ENST00000357037.5_1_17:40554488-40554908:-|nuORF	ENST00000357037.5_1_17:40554488-40554908:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	416.2338562011719	3	416.236274	1245.68699	0.47776	0.00019886	-3.7891	-0.0015771	-3.3113	-0.0013783	416.234583349699	78.17	1.5263	76.43	75.881	77.408	-1.7398					82	29	4	0	0	0	0.40664	1	6526	6526		67.494	5.8024	1	445250			34292	10708	28219	28246	37789	37789					0.0739766918541136
LQFIVLRDWG	10	Unmodified	_LQFIVLRDWG_					0	0	0		ENST00000357037.5_1_17:40554488-40554908:-|nuORF	ENST00000357037.5_1_17:40554488-40554908:-|nuORF	ENST00000357037.5_1_17:40554488-40554908:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		3	416.236274	1245.68699	0.73814	0.00030724	-4.1121	-0.0017116	-3.374	-0.0014044	416.2345175652381	78.973	1.5494	76.634	76.111	77.66	-2.3399	0.14925	-0.00015186	NaN	67.494	88	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	559410			34293	10708	28219	28246							0.0739766918541136
LQFIVLRDWG	10	Unmodified	_LQFIVLRDWG_					0	0	0		ENST00000357037.5_1_17:40554488-40554908:-|nuORF	ENST00000357037.5_1_17:40554488-40554908:-|nuORF	ENST00000357037.5_1_17:40554488-40554908:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	416.236274	1245.68699	-0.18705	-7.7859E-05	-3.9046	-0.0016253	-4.0917	-0.0017031	416.23457445563673	79.141	1.4872	76.39	76.038	77.525	-2.7514	-0.094752	0.00010721	NaN	67.494	84	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	594470			34294	10708	28219	28246							0.0739766918541136
LQFKIAEFP	9	Unmodified	_LQFKIAEFP_					0	0	0			REV__tr|A0A7D6W360|A0A7D6W360_9CLOTDUF2087domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08735PE=4SV=1	REV__tr|A0A7D6W360|A0A7D6W360_9CLOTDUF2087domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08735PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	545.8289184570312	2	546.808042	1091.60153	-0.1449	-7.9231E-05	-3.294	-0.0018012	-3.4388	-0.0018804	546.8061312937144	95.289	1.19	94.261	93.923	95.113	-1.0281					44	23	2	0	0	0	0.027462	1	8655	8655		37.812	15.852	1	54095	+		34295	31910	28220	28247	37790	37790					0.0593950399975256
LQFLEEGLVF	10	Unmodified	_LQFLEEGLVF_					0	0	0			REV__tr|A0A553SL73|A0A553SL73_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20105PE=4SV=1	REV__tr|A0A553SL73|A0A553SL73_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20105PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8248901367188	2	597.823889	1193.63323	-1.4989	-0.0008961	-1.8721	-0.0011192	-3.371	-0.0020153	597.822543518014	126.7	0.58784	125.29	124.88	125.46	-1.4143					16	11	2	0	0	0	0.6104	1	12073	12073		40.778	5.5999	1	39812	+		34296	30195	28221	28248	37791	37791					0.04415451963018313
LQFLHEHKI	9	Unmodified	_LQFLHEHKI_					0	0	0		ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1	ENSG00000123143|ENST00000242783|PKN1	ENSG00000123143|ENST00000242783|PKN1	MULTI-MSMS	OvCa99_classI_Rep5	1	582.8294067382812	2	582.82984	1163.64513	-0.16198	-9.4406E-05	-3.5424	-0.0020646	-3.7044	-0.002159	582.827838390835	52.814	0.86645	52.814	52.566	53.432	0					35	19	4	0	0	0	0.083631	1	4157	4157		101.6	0	1	2999300			34297	3576	28222	28249	37792	37792					0.0698511349689852
LQFLIFLLMK	10	Unmodified	_LQFLIFLLMK_					0	0	0			REV__ENSG00000230590.11,FTX,chrX,-,I10.1,74262031,74274259|74|9.87|2|intron	REV__ENSG00000230590.11,FTX,chrX,-,I10.1,74262031,74274259|74|9.87|2|intron	MULTI-SECPEP	OvCa99_classI_Rep5	1	422.5750732421875	3	422.594522	1264.76174	-0.54138	-0.00022879	2.7267	0.0011523	2.1853	0.00092349	422.5954730310792	37.346	0.18699	37.346	37.251	37.438	0					5	3	2	0	0	0	0.027033	1	2033	2033		20.837	0	1	13098	+		34298	23383	28223	28250	37793	37793					0.1399471567240198
LQFLLGFTL	9	Unmodified	_LQFLLGFTL_					0	0	0		ENST00000515197.2_1_7:135347327-135357590:+|nuORF;ENSG00000243317|ENST00000507606|STMP1	ENST00000515197.2_1_7:135347327-135357590:+|nuORF	ENST00000515197.2_1_7:135347327-135357590:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	526.3141479492188	2	526.312961	1050.61137	0.91829	0.00048331	2.2599	0.0011894	3.1782	0.0016727	526.3139752685214	125.3	2.0349	124.25	123.69	125.72	-1.0519					99	38	3	0	0	0	0.14998	1	9738	9738		84.916	8.0689	1	239120			34299	9375	28224	28251	37794	37794					0.08808692005140983
LQFLNTNFNK	10	Unmodified	_LQFLNTNFNK_					0	0	0			REV__ENSG00000122376|ENST00000298786|SHLD2	REV__ENSG00000122376|ENST00000298786|SHLD2	MULTI-MSMS	OvCa99_classI_Rep5	1	619.8282470703125	2	619.830037	1237.64552	0.784	0.00048595	-2.8285	-0.0017532	-2.0445	-0.0012672	619.8280643449394	156.49	0.95575	156.49	156.14	157.1	0					45	18	3	0	0	0	0.58067	1	18346	18346		44.377	12.847	1	179170	+		34300	18590	28225	28252	37795	37795					0.03620488426076918
LQFLYGESNS	10	Unmodified	_LQFLYGESNS_					0	0	0			REV__ENST00000534362.1_1_11:122805775-122817581:+|nuORF	REV__ENST00000534362.1_1_11:122805775-122817581:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	579.3226928710938	2	579.277303	1156.54005	-2.0349	-0.0011787	-1.8961	-0.0010984	-3.931	-0.0022771	579.777480281244	50.455	0.15525	47.314	47.236	47.392	-3.1416					4	2	2	0	0	0	0.026573	1	2911	2911		37.508	0	1	14219	+		34301	17961	28226	28253	37796	37796					-0.03195472490187967
LQFPLQKI	8	Unmodified	_LQFPLQKI_					0	0	0			REV__ENSG00000074755|ENST00000381638|ZZEF1	REV__ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	OvCa99_classI_Rep5	1	493.806396484375	2	493.805303	985.596052	0.69266	0.00034204	1.5084	0.00074487	2.2011	0.0010869	493.8058146559446	105.71	0.82984	105.71	105.31	106.14	0					53	18	4	0	0	0	0.081729	2	11884	11861;11884		148.21	0	1	1777500	+		34302	16953	28227	28254	37797;37798	37798					0.10267825207927217
LQFPLQKI	8	Unmodified	_LQFPLQKI_					0	0	0			REV__ENSG00000074755|ENST00000381638|ZZEF1	REV__ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	493.805303	985.596052	0.69266	0.00034204	1.5084	0.00074487	2.2011	0.0010869	493.8058146559446	105.71	0.82984	105.71	105.31	106.14	0	0	0	NaN	148.21	53	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1777500	+		34303	16953	28227	28254							0.10267825207927217
LQFQSFGR	8	Unmodified	_LQFQSFGR_					0	0	0		ENST00000512393.1_1_4:47582447-47584942:+|nuORF	ENST00000512393.1_1_4:47582447-47584942:+|nuORF	ENST00000512393.1_1_4:47582447-47584942:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.7986755371094	2	491.758884	981.503215	-0.53285	-0.00026203	-3.4961	-0.0017192	-4.029	-0.0019813	491.7570326305767	35.962	0.59821	35.962	35.566	36.164	0					19	12	2	0	0	0	0.028476	1	1862	1862		15.642	0	1	116220			34304	12996	28228	28255	37799	37799					0.011723204745749172
LQFVVKVLD	9	Unmodified	_LQFVVKVLD_					0	0	0		nc|ENSG00000222009|C9JJ37-2|BTBD19;ENST00000482715.5_1_1:45274492-45278998:+|nuORF;ENSG00000222009|ENST00000450269|BTBD19	nc|ENSG00000222009|C9JJ37-2|BTBD19	nc|ENSG00000222009|C9JJ37-2|BTBD19	MULTI-MSMS	OvCa99_classI_Rep5	1	530.8247680664062	2	530.823692	1059.63283	2.1071	0.0011185	-0.43242	-0.00022954	1.6746	0.00088894	530.8233243756563	136.88	1.0103	136.88	136.58	137.59	0					40	20	3	0	0	0	0.24951	1	15954	15954		68.787	0	1	179330			34305	9245	28229	28256	37800	37800					0.10540077033851958
LQFYLKQL	8	Unmodified	_LQFYLKQL_					0	0	0			REV__ENST00000481860.6_1_11:119043673-119051967:+|nuORF	REV__ENST00000481860.6_1_11:119043673-119051967:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.8090209960938	2	526.810585	1051.60662	-0.88544	-0.00046646	-3.1878	-0.0016794	-4.0732	-0.0021458	526.8087145468423	74.592	1.0138	71.361	71.144	72.157	-3.2308					36	20	2	0	0	0	0.53531	1	5842	5842		73.975	5.49	1	455690	+		34306	20670	28230	28257	37801	37801					0.08287807862370755
LQFYLKQL	8	Unmodified	_LQFYLKQL_					0	0	0			REV__ENST00000481860.6_1_11:119043673-119051967:+|nuORF	REV__ENST00000481860.6_1_11:119043673-119051967:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	526.810585	1051.60662	-0.4884	-0.00025729	-3.1764	-0.0016734	-3.6648	-0.0019307	526.8087408779636	73.585	1.5172	71.185	70.43	71.947	-2.3999	-0.026458	-1.7433E-05	NaN	73.975	46	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104420	+		34307	20670	28230	28257							0.08287807862370755
LQFYLKQL	8	Unmodified	_LQFYLKQL_					0	0	0			REV__ENST00000481860.6_1_11:119043673-119051967:+|nuORF	REV__ENST00000481860.6_1_11:119043673-119051967:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	526.810585	1051.60662	-0.79915	-0.000421	-3.046	-0.0016047	-3.8451	-0.0020257	526.8086686245287	73.575	1.2895	71.088	70.776	72.066	-2.4873	-0.12334	0.00012	NaN	73.975	33	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41475	+		34308	20670	28230	28257							0.08287807862370755
LQFYLKQL	8	Unmodified	_LQFYLKQL_					0	0	0			REV__ENST00000481860.6_1_11:119043673-119051967:+|nuORF	REV__ENST00000481860.6_1_11:119043673-119051967:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	526.810585	1051.60662	-0.88544	-0.00046646	-3.1878	-0.0016794	-4.0732	-0.0021458	526.8087145468423	74.592	1.0138	71.361	71.144	72.157	-3.2308	0.1498	-2.9422E-05	NaN	73.975	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	455690	+		34309	20670	28230	28257							0.08287807862370755
LQGALYLCSE	10	Unmodified	_LQGALYLCSE_					0	0	0		ENSG00000185610|ENST00000332700|DBX2	ENSG00000185610|ENST00000332700|DBX2	ENSG00000185610|ENST00000332700|DBX2	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.3092651367188	2	548.7708	1095.52705	0.99373	0.00054533	-1.5134	-0.00083049	-0.51964	-0.00028516	548.7694626379831	109.54	0.44379	109.54	109.37	109.81	0					15	9	2	0	0	0	0.027056	1	12400	12400		35.618	5.7767	1	119790			34310	8266	28231	28258	37802	37802					-0.01689626873940142
LQGCPQSLL	9	Carbamidomethyl (C)	_LQGC(Carbamidomethyl (C))PQSLL_	LQGC(1)PQSLL		LQGC(79)PQSLL		0	1	0		ENST00000601169.1_1_19:47539221-47543970:+|nuORF	ENST00000601169.1_1_19:47539221-47543970:+|nuORF	ENST00000601169.1_1_19:47539221-47543970:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.2688903808594	2	508.265684	1014.51682	-0.0040378	-2.0523E-06	-3.3811	-0.0017185	-3.3851	-0.0017206	508.2637962077052	96.361	1.7623	93.935	93.609	95.371	-2.4256					70	34	4	0	0	0	0.18193	1	8514	8514		79.451	7.5735	1	349180			34311	14223	28232	28259	37803	37803	161				0.010138101915117659
LQGERVAPE	9	Unmodified	_LQGERVAPE_					0	0	0			REV__ENST00000552741.5_1_12:82868290-82872800:+|nuORF	REV__ENST00000552741.5_1_12:82868290-82872800:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.7680969238281	2	499.766906	997.519259	-0.65935	-0.00032952	4.2671	0.0021326	3.6078	0.0018031	499.76874646722524	104.67	0.92801	102.55	102.22	103.15	-2.1192					44	17	3	0	0	0	0.46356	1	9478	9478		45.972	1.5951	1	321940	+		34312	27500	28233	28260	37804	37804					0.020399819208023473
LQGIYVTII	9	Unmodified	_LQGIYVTII_					0	0	0			REV__tr|A0A7D6ZYM5|A0A7D6ZYM5_9CLOTMultidrugeffluxMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_02870PE=4SV=1	REV__tr|A0A7D6ZYM5|A0A7D6ZYM5_9CLOTMultidrugeffluxMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_02870PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	510.8436279296875	2	510.310418	1018.60628	1.3786	0.00070353	1.5822	0.00080743	2.9609	0.001511	510.3107628113872	124.77	0.4676	123.71	123.33	123.79	-1.0519					12	8	2	0	0	0	0.027441	1	9666	9666		55.504	2.1528	1	16595	+		34313	32383	28234	28261	37805	37805					0.09772388142539512
LQGKLTKLA	9	Unmodified	_LQGKLTKLA_					0	0	0		ATP2B1|p.N713Ifs*22|1|0.46|ENSG00000070961|chr12:89611302-89611302|T/-|frameshift_variant;ATP2B3|p.K912Qfs*72|1|0.12|ENSG00000067842|chrX:153559836-153559837|-/C|frameshift_variant;nc|ENSG00000070961|P20020-4|ATP2B1;ENSG00000157087|ENST00000360273|ATP2B2;nc|ENSG00000157087|Q01814-5|ATP2B2;ENSG00000067842|ENST00000263519|ATP2B3;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000157087|Q01814-8|ATP2B2;nc|ENSG00000067842|Q16720-4|ATP2B3;nc|ENSG00000157087|Q01814-2|ATP2B2;nc|ENSG00000157087|Q01814-6|ATP2B2;nc|ENSG00000157087|Q01814-3|ATP2B2;nc|ENSG00000070961|P20020-6|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000067842|Q16720-2|ATP2B3;nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000067842|Q16720-5|ATP2B3;nc|ENSG00000157087|Q01814-7|ATP2B2;nc|ENSG00000067842|Q16720-3|ATP2B3;nc|ENSG00000067842|Q16720-6|ATP2B3;nc|ENSG00000157087|Q01814-4|ATP2B2;nc|ENSG00000067842|Q16720-7|ATP2B3;nc|ENSG00000067842|Q16720-8|ATP2B3;nc|ENSG00000070961|P20020-1|ATP2B1	ATP2B1|p.N713Ifs*22|1|0.46|ENSG00000070961|chr12:89611302-89611302|T/-|frameshift_variant	ATP2B1|p.N713Ifs*22|1|0.46|ENSG00000070961|chr12:89611302-89611302|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.78857421875	2	486.316035	970.617516	-0.015735	-7.6523E-06	-0.78209	-0.00038034	-0.79783	-0.000388	486.31562691762633	76.173	0.56805	73.234	72.936	73.504	-2.9389					16	11	2	0	0	0	0.027462	1	6063	6063		44.117	0	1	27549			34314	129	28235	28262	37806	37806					0.13103210236647556
LQGKLTKLA	9	Unmodified	_LQGKLTKLA_					0	0	0		ATP2B1|p.N713Ifs*22|1|0.46|ENSG00000070961|chr12:89611302-89611302|T/-|frameshift_variant;ATP2B3|p.K912Qfs*72|1|0.12|ENSG00000067842|chrX:153559836-153559837|-/C|frameshift_variant;nc|ENSG00000070961|P20020-4|ATP2B1;ENSG00000157087|ENST00000360273|ATP2B2;nc|ENSG00000157087|Q01814-5|ATP2B2;ENSG00000067842|ENST00000263519|ATP2B3;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000157087|Q01814-8|ATP2B2;nc|ENSG00000067842|Q16720-4|ATP2B3;nc|ENSG00000157087|Q01814-2|ATP2B2;nc|ENSG00000157087|Q01814-6|ATP2B2;nc|ENSG00000157087|Q01814-3|ATP2B2;nc|ENSG00000070961|P20020-6|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000067842|Q16720-2|ATP2B3;nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000067842|Q16720-5|ATP2B3;nc|ENSG00000157087|Q01814-7|ATP2B2;nc|ENSG00000067842|Q16720-3|ATP2B3;nc|ENSG00000067842|Q16720-6|ATP2B3;nc|ENSG00000157087|Q01814-4|ATP2B2;nc|ENSG00000067842|Q16720-7|ATP2B3;nc|ENSG00000067842|Q16720-8|ATP2B3;nc|ENSG00000070961|P20020-1|ATP2B1	ATP2B1|p.N713Ifs*22|1|0.46|ENSG00000070961|chr12:89611302-89611302|T/-|frameshift_variant	ATP2B1|p.N713Ifs*22|1|0.46|ENSG00000070961|chr12:89611302-89611302|T/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	486.316035	970.617516	-0.42896	-0.00020861	-0.13768	-6.6954E-05	-0.56663	-0.00027556	486.31580874455153	74.929	0.87491	72.957	72.796	73.671	-1.9711	-0.054874	-0.00046894	NaN	60.972	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21786			34315	129	28235	28262							0.13103210236647556
LQGKLTKLA	9	Unmodified	_LQGKLTKLA_					0	0	0		ATP2B1|p.N713Ifs*22|1|0.46|ENSG00000070961|chr12:89611302-89611302|T/-|frameshift_variant;ATP2B3|p.K912Qfs*72|1|0.12|ENSG00000067842|chrX:153559836-153559837|-/C|frameshift_variant;nc|ENSG00000070961|P20020-4|ATP2B1;ENSG00000157087|ENST00000360273|ATP2B2;nc|ENSG00000157087|Q01814-5|ATP2B2;ENSG00000067842|ENST00000263519|ATP2B3;ENSG00000070961|ENST00000428670|ATP2B1;nc|ENSG00000157087|Q01814-8|ATP2B2;nc|ENSG00000067842|Q16720-4|ATP2B3;nc|ENSG00000157087|Q01814-2|ATP2B2;nc|ENSG00000157087|Q01814-6|ATP2B2;nc|ENSG00000157087|Q01814-3|ATP2B2;nc|ENSG00000070961|P20020-6|ATP2B1;nc|ENSG00000070961|P20020-2|ATP2B1;nc|ENSG00000067842|Q16720-2|ATP2B3;nc|ENSG00000070961|P20020-5|ATP2B1;nc|ENSG00000067842|Q16720-5|ATP2B3;nc|ENSG00000157087|Q01814-7|ATP2B2;nc|ENSG00000067842|Q16720-3|ATP2B3;nc|ENSG00000067842|Q16720-6|ATP2B3;nc|ENSG00000157087|Q01814-4|ATP2B2;nc|ENSG00000067842|Q16720-7|ATP2B3;nc|ENSG00000067842|Q16720-8|ATP2B3;nc|ENSG00000070961|P20020-1|ATP2B1	ATP2B1|p.N713Ifs*22|1|0.46|ENSG00000070961|chr12:89611302-89611302|T/-|frameshift_variant	ATP2B1|p.N713Ifs*22|1|0.46|ENSG00000070961|chr12:89611302-89611302|T/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	486.316035	970.617516	-1.041	-0.00050627	0.88013	0.00042802	-0.16091	-7.8252E-05	486.31628109568055	75.256	0.74376	72.846	72.584	73.327	-2.4106	-0.1666	0.00052101	NaN	60.972	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38437			34316	129	28235	28262							0.13103210236647556
LQGKNLKFDI	10	Unmodified	_LQGKNLKFDI_					0	0	0		tr|A0A7D6VUE7|A0A7D6VUE7_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_11335PE=4SV=1	tr|A0A7D6VUE7|A0A7D6VUE7_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_11335PE=4SV=1	tr|A0A7D6VUE7|A0A7D6VUE7_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_11335PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.2672729492188	2	588.342781	1174.67101	1.3855	0.00081512	0.50515	0.0002972	1.8906	0.0011123	588.3429543959077	133.15	0.31848	133.15	132.99	133.31	0					9	6	2	0	0	0	0.026714	1	15485	15485		35.152	2.4015	1	112390			34317	35181	28236	28263	37807	37807					0.09065962948511697
LQGLPGLVRA	10	Unmodified	_LQGLPGLVRA_					0	0	0		ENST00000574149.6_1_17:19314736-19316565:+|nuORF	ENST00000574149.6_1_17:19314736-19316565:+|nuORF	ENST00000574149.6_1_17:19314736-19316565:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.31787109375	2	512.319109	1022.62366	2.0088	0.0010292	-3.0397	-0.0015573	-1.0308	-0.00052812	512.3174566461283	137.13	1.1927	135.59	135.23	136.42	-1.5437					51	24	4	0	0	0	0.79213	1	13343	13343		19.997	0	1	57822			34318	13927	28237	28264	37808	37808					0.11325728468170837
LQGLRAQLSD	10	Unmodified	_LQGLRAQLSD_					0	0	0			REV__ENSG00000173269|ENST00000372027|MMRN2	REV__ENSG00000173269|ENST00000372027|MMRN2	MULTI-MSMS	OvCa9_classI_Rep2	2	550.8059692382812	2	550.806562	1099.59857	-0.54913	-0.00030246	0.24072	0.00013259	-0.3084	-0.00016987	550.8065503475332	50.054	1.4381	47.26	46.884	48.322	-2.794					74	28	3	0	0	0	0.64697	1	3211	3211		36.447	0.12911	1	265350	+		34319	21763	28238	28265	37809	37809					0.052756288749378655
LQGLVLAESP	10	Unmodified	_LQGLVLAESP_					0	0	0		PPARG|p.Q472Tfs*60|1|0.25|ENSG00000132170|chr3:12434039-12434040|-/A|frameshift_variant	PPARG|p.Q472Tfs*60|1|0.25|ENSG00000132170|chr3:12434039-12434040|-/A|frameshift_variant	PPARG|p.Q472Tfs*60|1|0.25|ENSG00000132170|chr3:12434039-12434040|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.7943115234375	2	513.795132	1025.57571	0.6265	0.00032189	-0.85306	-0.0004383	-0.22656	-0.00011641	513.7946041614833	128.88	1.2853	127.42	127.15	128.44	-1.4565					55	25	4	0	0	0	0.67931	1	12342	12342		32.812	6.1195	1	193110			34320	15513	28239	28266	37810	37810					0.06394609757467151
LQGRHRIRT	9	Unmodified	_LQGRHRIRT_					0	0	0		ENST00000537182.5_1_12:69222682-69233087:+|nuORF	ENST00000537182.5_1_12:69222682-69233087:+|nuORF	ENST00000537182.5_1_12:69222682-69233087:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	569.2868041992188	2	568.841605	1135.66866	0.085958	4.8896E-05	1.8456	0.0010498	1.9315	0.0010987	568.8426608126618	103.21	0.93892	101.01	100.78	101.72	-2.1994					24	17	2	0	0	0	0.027462	1	9382	9382		29.15	1.2673	1	46756			34321	13402	28240	28267	37811	37811					0.10624972054051796
LQGRHRIRT	9	Unmodified	_LQGRHRIRT_					0	0	0		ENST00000537182.5_1_12:69222682-69233087:+|nuORF	ENST00000537182.5_1_12:69222682-69233087:+|nuORF	ENST00000537182.5_1_12:69222682-69233087:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	568.841605	1135.66866	-1.5778	-0.00089754	3.1912	0.0018153	1.6134	0.00091775	568.8433872562644	101.65	0.54502	100.89	100.67	101.21	-0.76401	-0.086811	0.00080625	NaN	29.15	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40309			34322	13402	28240	28267							0.10624972054051796
LQGRHRIRT	9	Unmodified	_LQGRHRIRT_					0	0	0		ENST00000537182.5_1_12:69222682-69233087:+|nuORF	ENST00000537182.5_1_12:69222682-69233087:+|nuORF	ENST00000537182.5_1_12:69222682-69233087:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	568.841605	1135.66866	-0.67148	-0.00038197	2.488	0.0014153	1.8165	0.0010333	568.8429063274397	102.55	0.46909	101.02	100.79	101.26	-1.5211	0.048324	6.2067E-06	NaN	29.15	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39217			34323	13402	28240	28267							0.10624972054051796
LQGRSVAVQKQ	11	Unmodified	_LQGRSVAVQKQ_					0	0	0		ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	MULTI-MSMS	OvCa9_classI_Rep2	2	607.353759765625	2	607.354211	1212.69387	-0.61354	-0.00037263	0.40041	0.00024319	-0.21312	-0.00012944	607.3543577015784	45.588	1.5455	42.878	42.497	44.043	-2.7097					76	30	4	0	0	0	0.60035	1	2669	2669		21.686	5.679	1	376690			34324	8846	28241	28268	37812	37812					0.09602982065985088
LQGTASADSR	10	Unmodified	_LQGTASADSR_					0	0	0		ENST00000298355.7_1_14:51562262-51562502:-|nuORF	ENST00000298355.7_1_14:51562262-51562502:-|nuORF	ENST00000298355.7_1_14:51562262-51562502:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.2971496582031	2	503.25162	1004.48869	-0.37345	-0.00018794	3.2735	0.0016474	2.9001	0.0014595	503.25376268560603	65.368	0.51221	65.368	64.995	65.507	0					22	12	3	0	0	0	0.026694	1	5983	5983		38.754	0	1	1251600			34325	10155	28242	28269	37813	37813					-0.013377964642359075
LQGTRVTI	8	Unmodified	_LQGTRVTI_					0	0	0			REV__CUBN|p.N2467Tfs*26|1|0.51|ENSG00000107611|chr10:16913949-16913949|A/-|frameshift_variant	REV__CUBN|p.N2467Tfs*26|1|0.51|ENSG00000107611|chr10:16913949-16913949|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	444.2510681152344	2	444.269084	886.523616	1.353	0.00060109	-1.7291	-0.00076817	-0.37609	-0.00016708	444.26815835038406	46.628	1.3877	43.919	43.646	45.034	-2.7097					34	27	2	0	0	0	0.028476	1	2812	2812		90.777	13.93	1	65110	+		34326	16257	28243	28270	37814	37814					0.07581491134385487
LQHAQLVHP	9	Unmodified	_LQHAQLVHP_					0	0	0		tr|A0A553SJZ2|A0A553SJZ2_NIACIDNApolymeraseIIIsubunitalphaOS=NialliacirculansOX=1397GN=CEQ21_17785PE=3SV=1	tr|A0A553SJZ2|A0A553SJZ2_NIACIDNApolymeraseIIIsubunitalphaOS=NialliacirculansOX=1397GN=CEQ21_17785PE=3SV=1	tr|A0A553SJZ2|A0A553SJZ2_NIACIDNApolymeraseIIIsubunitalphaOS=NialliacirculansOX=1397GN=CEQ21_17785PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.8179931640625	2	521.793258	1041.57196	-0.41647	-0.00021731	-2.0596	-0.0010747	-2.4761	-0.001292	521.7924463825759	115.59	0.74033	114.55	114.26	115	-1.0414					21	14	2	0	0	0	0.027462	1	8587	8587		37.159	18.835	1	30064			34327	33557	28244	28271	37815	37815					0.05283984774291639
LQHCLPILK	9	Unmodified	_LQHCLPILK_					0	0	0			REV__nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	REV__nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	MULTI-SECPEP	OvCa9_classI_Rep2	2	533.8103637695312	2	532.817887	1063.62122	-0.44004	-0.00023446	-2.0584	-0.0010968	-2.4985	-0.0013312	533.3186166007198	113.34	0.54431	113.22	112.97	113.51	-0.12174					13	10	2	0	0	0	0.027462	1	10758	10758		42.396	10.441	1	44867	+		34328	18436	28245	28272	37816	37816					0.09195556738859523
LQHDVLKL	8	Unmodified	_LQHDVLKL_					0	0	0		nc|ENSG00000107745|Q9BPX6-5|MICU1;nc|ENSG00000107745|Q9BPX6-4|MICU1;nc|ENSG00000107745|Q9BPX6-2|MICU1;ENSG00000107745|ENST00000361114|MICU1;nc|ENSG00000107745|Q9BPX6-3|MICU1;nc|ENSG00000107745|Q9BPX6-6|MICU1	nc|ENSG00000107745|Q9BPX6-5|MICU1	nc|ENSG00000107745|Q9BPX6-5|MICU1	MULTI-MSMS	OvCa99_classI_Rep5	1	483.2930603027344	2	483.292559	964.570566	2.6433	0.0012775	-0.16917	-8.1761E-05	2.4741	0.0011957	483.2923228358129	96.205	1.8228	96.205	95.699	97.522	0					65	42	3	0	0	0	0.57734	1	10512	10512		68.787	2.3575	1	1033500			34329	2613	28246	28273	37817	37817					0.08686350685513844
LQHHTCPHC	9	2 Carbamidomethyl (C)	_LQHHTC(Carbamidomethyl (C))PHC(Carbamidomethyl (C))_	LQHHTC(1)PHC(1)		LQHHTC(48)PHC(48)		0	2	0		ENSG00000183579|ENST00000544604|ZNRF3;nc|ENSG00000183579|Q9ULT6-2|ZNRF3	ENSG00000183579|ENST00000544604|ZNRF3	ENSG00000183579|ENST00000544604|ZNRF3	MULTI-MSMS	OvCa99_classI_Rep5	1	595.2559204101562	2	595.253117	1188.49168	1.577	0.00093871	2.7641	0.0016453	4.3411	0.002584	595.2544992189929	130.58	0.67001	130.58	130.34	131.01	0					30	13	3	0	0	0	0.44294	1	15154	15154		47.916	12.764	1	415860			34330	8088	28247	28274	37818	37818	81;82				-0.09502567882736912
LQHISKNKD	9	Unmodified	_LQHISKNKD_					0	0	0		ENSG00000160808|ENST00000292327|MYL3	ENSG00000160808|ENST00000292327|MYL3	ENSG00000160808|ENST00000292327|MYL3	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.8262939453125	2	541.80128	1081.58801	1.6158	0.00087543	3.3825	0.0018327	4.9983	0.0027081	541.8029537461116	133.24	1.0186	133.24	132.94	133.96	0					32	21	2	0	0	0	0.027455	1	15562	15562		42.396	5.237	1	135880			34331	6096	28248	28275	37819	37819					0.050476462205324424
LQHKELESQEQ	11	Unmodified	_LQHKELESQEQ_					0	0	0		nc|ENSG00000154240|Q8N8E3-2|CEP112;ENST00000580482.5_1_17:63685204-63793368:-|nuORF;ENSG00000154240|ENST00000535342|CEP112	nc|ENSG00000154240|Q8N8E3-2|CEP112	nc|ENSG00000154240|Q8N8E3-2|CEP112	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.9244384765625	3	456.896646	1367.66811	0.20422	9.3305E-05	0.022499	1.028E-05	0.22671	0.00010358	456.89650020076766	31.633	0.19833	31.633	31.46	31.658	0					6	3	2	0	0	0	0.026101	1	1306	1306		26.75	5.7175	1	12403			34332	15106	28249	28276	37820	37820					-0.0010195696695518564
LQHLCEVII	9	Unmodified	_LQHLCEVII_					0	0	0		ENST00000244869.2_1_4:75251275-75251359:+|nuORF	ENST00000244869.2_1_4:75251275-75251359:+|nuORF	ENST00000244869.2_1_4:75251275-75251359:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	534.29931640625	2	534.299527	1066.5845	1.8498	0.00098836	-3.161	-0.0016889	-1.3112	-0.00070057	534.2977305439804	81.914	1.2102	81.914	81.613	82.824	0					52	28	2	0	0	0	0.21231	1	8477	8477		74.255	10.949	1	4792600			34333	9773	28250	28277	37821	37821					0.053872601223019956
LQHLHMIDK	9	Unmodified	_LQHLHMIDK_					0	0	0		nc|ENSG00000156650|Q8WYB5-3|KAT6B;KAT6B|p.F1803Rfs*22|1|0.06|ENSG00000156650|chr10:75030230-75030231|-/CG|frameshift_variant;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B;ENST00000490365.1_1_10:76744849-76785012:+|nuORF	nc|ENSG00000156650|Q8WYB5-3|KAT6B	nc|ENSG00000156650|Q8WYB5-3|KAT6B	MULTI-MSMS	OvCa99_classI_Rep5	1	568.3098754882812	2	567.808051	1133.60155	1.7409	0.00098852	2.6558	0.001508	4.3967	0.0024965	568.311115378325	93.699	0.74789	93.699	93.346	94.094	0					34	17	4	0	0	0	0.24951	1	10190	10190		68.787	15.435	1	1673100			34334	5851	28251	28278	37822	37822					0.04009180728098727
LQHLTDLI	8	Unmodified	_LQHLTDLI_					0	0	0		ENSG00000184381|ENST00000332509|PLA2G6;nc|ENSG00000184381|O60733-2|PLA2G6;nc|ENSG00000184381|O60733-3|PLA2G6	ENSG00000184381|ENST00000332509|PLA2G6	ENSG00000184381|ENST00000332509|PLA2G6	MULTI-SECPEP	OvCa99_classI_Rep5	1	476.7334289550781	2	476.776742	951.538931	2.1501	0.0010251	4.0001	0.0019072	6.1502	0.0029323	476.77840046869966	137.67	0.32526	137.67	137.5	137.82	0					9	6	2	0	0	0	0.028476	1	16065	16065		23.042	6.5693	1	30500			34335	8154	28252	28279	37823	37823					0.06122357931565148
LQHPRERPP	9	Unmodified	_LQHPRERPP_					0	0	0		ENST00000381588.8_1_13:26795399-26796425:-|nuORF	ENST00000381588.8_1_13:26795399-26796425:-|nuORF	ENST00000381588.8_1_13:26795399-26796425:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.8579711914062	2	565.314889	1128.61522	1.0486	0.00059277	1.8119	0.0010243	2.8604	0.001617	565.316148658332	151.9	0.85457	151.9	151.7	152.55	0					24	18	2	0	0	0	0.027462	1	17845	17845		31.53	15.057	1	66086			34336	11167	28253	28280	37824	37824					0.05606174551553522
LQHPRERPP	9	Unmodified	_LQHPRERPP_					0	0	0		ENST00000381588.8_1_13:26795399-26796425:-|nuORF	ENST00000381588.8_1_13:26795399-26796425:-|nuORF	ENST00000381588.8_1_13:26795399-26796425:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	565.314889	1128.61522	-5.2145	-0.0029478	-0.31547	-0.00017834	-5.5299	-0.0031262	565.3148094832072	152.59	0.30025	151.62	151.35	151.65	-0.97301	-0.083747	0.00090532	NaN	31.53	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7265.8			34337	11167	28253	28280							0.05606174551553522
LQHPRERPP	9	Unmodified	_LQHPRERPP_					0	0	0		ENST00000381588.8_1_13:26795399-26796425:-|nuORF	ENST00000381588.8_1_13:26795399-26796425:-|nuORF	ENST00000381588.8_1_13:26795399-26796425:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	565.314889	1128.61522	-2.694	-0.001523	-2.7446	-0.0015516	-5.4387	-0.0030746	565.3131892163966	153.02	0.35699	151.59	151.35	151.71	-1.4351	-0.11531	-0.0018411	NaN	31.53	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11315			34338	11167	28253	28280							0.05606174551553522
LQHTPFVL	8	Unmodified	_LQHTPFVL_					0	0	0		ENST00000206423.7_2_3:112359253-112359325:-|nuORF	ENST00000206423.7_2_3:112359253-112359325:-|nuORF	ENST00000206423.7_2_3:112359253-112359325:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	477.7752990722656	2	477.774003	953.533452	-1.1794	-0.0005635	-1.4047	-0.00067111	-2.5841	-0.0012346	477.7731851270359	103.69	0.55335	103.69	103.43	103.98	0					25	12	3	0	0	0	0.59148	1	11600	11600		65.803	7.9919	1	647520			34339	9655	28254	28281	37825	37825					0.054826791397545094
LQHTPFVL	8	Unmodified	_LQHTPFVL_					0	0	0		ENST00000206423.7_2_3:112359253-112359325:-|nuORF	ENST00000206423.7_2_3:112359253-112359325:-|nuORF	ENST00000206423.7_2_3:112359253-112359325:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	477.774003	953.533452	-0.88259	-0.00042168	0.65522	0.00031305	-0.22737	-0.00010863	477.77413392051915	103.98	0.74316	103.4	103.18	103.92	-0.57639	-0.12939	0.00088339	NaN	65.803	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37687			34340	9655	28254	28281							0.054826791397545094
LQHTPFVL	8	Unmodified	_LQHTPFVL_					0	0	0		ENST00000206423.7_2_3:112359253-112359325:-|nuORF	ENST00000206423.7_2_3:112359253-112359325:-|nuORF	ENST00000206423.7_2_3:112359253-112359325:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	477.774003	953.533452	0.99417	0.00047499	-1.1669	-0.00055752	-0.17275	-8.2536E-05	477.77318429161215	104.87	0.77985	103.52	103.26	104.04	-1.3482	-0.0038715	-0.00085776	NaN	65.803	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35138			34341	9655	28254	28281							0.054826791397545094
LQHTPFVL	8	Unmodified	_LQHTPFVL_					0	0	0		ENST00000206423.7_2_3:112359253-112359325:-|nuORF	ENST00000206423.7_2_3:112359253-112359325:-|nuORF	ENST00000206423.7_2_3:112359253-112359325:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	477.774003	953.533452	0.13069	6.2438E-05	0.82902	0.00039608	0.9597	0.00045852	477.77381994323304	105.52	0.9557	103.5	103.2	104.16	-2.0161	-0.027365	0.0010495	NaN	65.803	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49293			34342	9655	28254	28281							0.054826791397545094
LQICILCQIQ	10	Unmodified	_LQICILCQIQ_					0	0	0		ENST00000438423.6_1_15:57580499-57580643:+|nuORF	ENST00000438423.6_1_15:57580499-57580643:+|nuORF	ENST00000438423.6_1_15:57580499-57580643:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.3396606445312	2	587.81977	1173.62499	-0.040555	-2.3839E-05	-4.1559	-0.0024429	-4.1964	-0.0024667	587.8171437623638	31.194	0.53014	31.194	30.979	31.509	0					24	10	3	0	0	0	0.026891	1	1291	1291		24.519	1.4767	1	113820			34343	11899	28255	28282	37826	37826					0.045118584504052706
LQIDVDGRKE	10	Unmodified	_LQIDVDGRKE_					0	0	0		nc|ENSG00000037474|Q08J23-3|NSUN2;NSUN2|p.K565Gfs*9|1|0.04|ENSG00000037474|chr5:6605316-6605317|TT/-|frameshift_variant;NSUN2|p.A684Rfs*11|1|0.06|ENSG00000037474|chr5:6600180-6600181|-/G|frameshift_variant;nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	586.3364868164062	2	586.817127	1171.6197	-1.1477	-0.00067351	0.68876	0.00040418	-0.45897	-0.00026933	586.8175230112355	40.668	1.6145	37.714	37.213	38.827	-2.9541					69	30	5	0	0	0	0.028113	1	1708	1708		93.598	21.72	1	338700			34344	1090	28256	28283	37827	37827					0.04075594183814246
LQIDVDGRKE	10	Unmodified	_LQIDVDGRKE_					0	0	0		nc|ENSG00000037474|Q08J23-3|NSUN2;NSUN2|p.K565Gfs*9|1|0.04|ENSG00000037474|chr5:6605316-6605317|TT/-|frameshift_variant;NSUN2|p.A684Rfs*11|1|0.06|ENSG00000037474|chr5:6600180-6600181|-/G|frameshift_variant;nc|ENSG00000037474|Q08J23-2|NSUN2;ENSG00000037474|ENST00000264670|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	nc|ENSG00000037474|Q08J23-3|NSUN2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	586.817127	1171.6197	-0.27268	-0.00016001	0.063196	3.7084E-05	-0.20948	-0.00012293	586.8170460139203	40.429	0.84321	37.719	37.152	37.995	-2.7097	0.002617	-0.00042264	NaN	93.598	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62136			34345	1090	28256	28283							0.04075594183814246
LQIFFKLIF	9	Unmodified	_LQIFFKLIF_					0	0	0		tr|A0A553SF51|A0A553SF51_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08265PE=3SV=1	tr|A0A553SF51|A0A553SF51_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08265PE=3SV=1	tr|A0A553SF51|A0A553SF51_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08265PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.3385620117188	2	584.860078	1167.7056	0.29123	0.00017033	-2.83	-0.0016551	-2.5387	-0.0014848	585.3617148136345	74.286	0.38501	74.286	74.056	74.441	0					11	9	2	0	0	0	0.027462	1	7360	7360		23.042	5.5745	1	251590			34346	32992	28257	28284	37828	37828					0.128458308272684
LQIHPALLAS	10	Unmodified	_LQIHPALLAS_					0	0	0		ENST00000257336.5_1_13:103459816-103460068:+|nuORF	ENST00000257336.5_1_13:103459816-103460068:+|nuORF	ENST00000257336.5_1_13:103459816-103460068:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8167114257812	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.73378	1	13839	13839		26.693	1.1189	1	166960			34347	9827	28258	28285	37829	37829					0.09498308748311501
LQIPLNKKS	9	Unmodified	_LQIPLNKKS_					0	0	0			REV__tr|A0A553SMY0|A0A553SMY0_NIACIAAAfamilyATPaseOS=NialliacirculansOX=1397GN=CEQ21_23385PE=3SV=1	REV__tr|A0A553SMY0|A0A553SMY0_NIACIAAAfamilyATPaseOS=NialliacirculansOX=1397GN=CEQ21_23385PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.797607421875	2	520.826766	1039.63898	0.58749	0.00030598	2.6237	0.0013665	3.2112	0.0016725	520.8279799897615	36.313	0.30066	33.465	33.288	33.589	-2.849					7	5	2	0	0	0	0.027462	1	1237	1237		32.812	0	1	4936	+		34348	30380	28259	28286	37830	37830					0.12074595265357857
LQIQGTLLLQ	10	Unmodified	_LQIQGTLLLQ_					0	0	0		nc|ENSG00000016864|Q68CQ7-2|GLT8D1;ENST00000484163.5_1_3:52729811-52734476:-|nuORF	nc|ENSG00000016864|Q68CQ7-2|GLT8D1	nc|ENSG00000016864|Q68CQ7-2|GLT8D1	MULTI-MSMS	OvCa99_classI_Rep5	1	563.8463745117188	2	563.845156	1125.67576	2.7389	0.0015443	-0.78628	-0.00044334	1.9526	0.001101	563.8444127748243	107.5	0.58546	107.5	107.23	107.82	0					28	13	3	0	0	0	0.34811	1	12132	12132		75.043	1.0686	1	925550			34349	12595	28260	28287	37831	37831					0.11794847091300653
LQIQMYQL	8	Unmodified	_LQIQMYQL_					0	0	0		ENSG00000065882|ENST00000698857|TBC1D1;nc|ENSG00000065882|Q86TI0|TBC1D1;ENST00000401554.5_1_4:38112345-38138953:+|nuORF;ENST00000407365.5_1_4:38113700-38138953:+|nuORF;ENST00000475531.1_1_4:38117521-38119821:+|nuORF;nc|ENSG00000136111|O60343-4|TBC1D4;nc|ENSG00000136111|O60343-5|TBC1D4;nc|ENSG00000136111|O60343-2|TBC1D4;nc|ENSG00000136111|O60343-3|TBC1D4;ENSG00000136111|ENST00000377636|TBC1D4	ENSG00000065882|ENST00000698857|TBC1D1;nc|ENSG00000136111|O60343-4|TBC1D4	ENSG00000065882|ENST00000698857|TBC1D1	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.3242797851562	2	518.778428	1035.5423	1.547	0.00080256	-2.5123	-0.0013033	-0.9653	-0.00050078	518.7767239028964	128.68	0.37347	128.68	128.47	128.84	0					16	7	3	0	0	0	0.028476	1	14898	14898		33.516	3.674	1	126650			34350	1338;4458	28261	28288	37832	37832					0.02595284713925139
LQIRAFAKL	9	Unmodified	_LQIRAFAKL_					0	0	0		ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	MULTI-MSMS	OvCa99_classI_Rep5	1	530.33984375	2	530.337301	1058.66005	2.8695	0.0015218	-0.54591	-0.00028951	2.3236	0.0012323	530.3368603721555	90.046	0.65716	90.046	89.804	90.462	0					39	15	4	0	0	0	0.071436	1	9635	9635		106.42	18.661	1	3362200			34351	9436	28262	28289	37833	37833					0.13306605364869029
LQIRIGSTPVV	11	Unmodified	_LQIRIGSTPVV_					0	0	0		nc|ENSG00000140465|P04798-2|CYP1A1;CYP1A1|p.A370Sfs*48|1|0.1|ENSG00000140465|chr15:74721257-74721258|-/T|frameshift_variant;ENSG00000140465|ENST00000379727|CYP1A1	nc|ENSG00000140465|P04798-2|CYP1A1	nc|ENSG00000140465|P04798-2|CYP1A1	MULTI-MSMS	OvCa9_classI_Rep3	3	591.8644409179688	2	591.86388	1181.71321	0.72408	0.00042856	0.6408	0.00037927	1.3649	0.00080783	591.8641978183085	65.182	2.2339	62.236	61.844	64.078	-2.9459					105	43	4	0	0	0	0.71191	1	2643	2643		25.574	0	1	184170			34352	701	28263	28290	37834	37834					0.1296193835687518
LQISRKAPDP	10	Unmodified	_LQISRKAPDP_					0	0	0		ENST00000368366.5_1_1:155217575-155221373:-|nuORF;nc|ENSG00000160767|P81408-2|ENTREP3;nc|ENSG00000160767|P81408-3|ENTREP3;ENSG00000160767|ENST00000361361|ENTREP3;nc|ENSG00000160767|P81408-4|ENTREP3	ENST00000368366.5_1_1:155217575-155221373:-|nuORF	ENST00000368366.5_1_1:155217575-155221373:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.7975463867188	2	562.824755	1123.63496	1.1676	0.00065717	-1.9916	-0.0011209	-0.82402	-0.00046378	562.8237781457544	58.649	0.55058	55.257	54.952	55.502	-3.392					17	10	2	0	0	0	0.027056	1	3887	3887		20.947	0	1	23316			34353	6087	28264	28291	37835	37835					0.07808505771663476
LQITFTVGLE	10	Unmodified	_LQITFTVGLE_					0	0	0			REV__nc|ENSG00000136492|Q9BX63-2|BRIP1	REV__nc|ENSG00000136492|Q9BX63-2|BRIP1	MULTI-MSMS	OvCa99_classI_Rep5	1	560.8197631835938	2	560.816064	1119.61758	2.0963	0.0011757	0.76637	0.00042979	2.8627	0.0016055	560.8158867229721	119.78	0.5947	119.78	119.5	120.09	0					23	14	2	0	0	0	0.19075	1	13750	13750		95.815	2.6197	1	410390	+		34354	19387	28265	28292	37836	37836					0.06255165446009414
LQITFTVGLE	10	Unmodified	_LQITFTVGLE_					0	0	0			REV__nc|ENSG00000136492|Q9BX63-2|BRIP1	REV__nc|ENSG00000136492|Q9BX63-2|BRIP1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	560.816064	1119.61758	0.92459	0.00051853	0.093611	5.2498E-05	1.0182	0.00057102	560.815712151707	121.07	0.72667	120.04	119.71	120.43	-1.0271	0.13049	-0.00030612	NaN	95.815	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22331	+		34355	19387	28265	28292							0.06255165446009414
LQIVEAEFL	9	Unmodified	_LQIVEAEFL_					0	0	0		ENST00000515454.5_1_5:115350123-115359090:+|nuORF	ENST00000515454.5_1_5:115350123-115359090:+|nuORF	ENST00000515454.5_1_5:115350123-115359090:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.783203125	2	531.297507	1060.58046	-1.6571	-0.0008804	-1.1662	-0.00061961	-2.8233	-0.0015	531.2966490563402	48.533	1.0785	45.425	44.787	45.866	-3.1077					32	20	2	0	0	0	0.027426	1	2647	2647		53.351	5.4358	1	156160			34356	13046	28266	28293	37837	37837					0.05259493900234702
LQIVKPLE	8	Unmodified	_LQIVKPLE_					0	0	0		ENSG00000182606|ENST00000327628|TRAK1;TRAK1|p.P794Hfs*26|1|0.37|ENSG00000182606|chr3:42223253-42223253|C/-|frameshift_variant;nc|ENSG00000182606|Q9UPV9-3|TRAK1;nc|ENSG00000182606|Q9UPV9-2|TRAK1;ENSG00000115993|ENST00000332624|TRAK2	ENSG00000182606|ENST00000327628|TRAK1;ENSG00000115993|ENST00000332624|TRAK2	ENSG00000182606|ENST00000327628|TRAK1	MULTI-MSMS	OvCa9_classI_Rep2	2	470.29608154296875	2	470.29731	938.580068	-0.49251	-0.00023162	-2.9033	-0.0013654	-3.3958	-0.001597	470.29591238963496	32.315	1.7376	29.606	29.382	31.119	-2.7097					90	34	5	0	0	0	0.75661	1	1121	1121		19.36	0	1	1326000			34357	8013;3146	28267	28294	37838	37838					0.10832118971040927
LQIVPCQYML	10	Unmodified	_LQIVPCQYML_					0	0	0		ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MULTI-MSMS	OvCa99_classI_Rep5	1	604.3177490234375	2	604.31432	1206.61409	2.8208	0.0017046	3.0864	0.0018652	5.9072	0.0035698	604.3159294345343	102.3	0.59559	102.3	102.04	102.63	0					33	13	3	0	0	0	0.53885	1	11406	11406		49.442	5.3247	1	1321100			34358	3568	28268	28295	37839	37839					0.019044560761358298
LQIVPCQYML	10	Unmodified	_LQIVPCQYML_					0	0	0		ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MULTI-MATCH	OvCa9_classI_Rep2	2		2	604.31432	1206.61409	-1.3263	-0.0008015	0.11045	6.6745E-05	-1.2158	-0.00073475	604.3142497326604	103.17	0.83865	102.48	102.13	102.97	-0.68459	0.053554	-0.00070264	NaN	49.442	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38924			34359	3568	28268	28295							0.019044560761358298
LQIVPCQYML	10	Unmodified	_LQIVPCQYML_					0	0	0		ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MULTI-MATCH	OvCa9_classI_Rep3	3		2	604.31432	1206.61409	2.1277	0.0012858	-3.8179	-0.0023072	-1.6902	-0.0010214	604.3118883103493	103.94	1.0425	102.51	102.18	103.23	-1.4347	0.077145	-0.0054506	NaN	49.442	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52050			34360	3568	28268	28295							0.019044560761358298
LQIVRPIV	8	Unmodified	_LQIVRPIV_					0	0	0			REV__KIF4A|p.C1088Lfs*26|1|0.31|ENSG00000090889|chrX:70417891-70417892|-/C|frameshift_variant	REV__KIF4A|p.C1088Lfs*26|1|0.31|ENSG00000090889|chrX:70417891-70417892|-/C|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	469.2835998535156	2	469.313295	936.612037	0.95266	0.00044709	0.19376	9.0933E-05	1.1464	0.00053803	469.31329253905216	103.32	0.49976	103.32	103.05	103.55	0					14	11	2	0	0	0	0.028476	1	11527	11527		57.811	5.5121	1	205730	+		34361	17236	28269	28296	37840	37840					0.14119531444850963
LQIWLLYI	8	Unmodified	_LQIWLLYI_					0	0	0		L1PREC2_dup1338|chr3:98831351-98834041:-|1.380298648680358|0.2119742938869221|2.7|429.0|123|2|anti-sense	L1PREC2_dup1338|chr3:98831351-98834041:-|1.380298648680358|0.2119742938869221|2.7|429.0|123|2|anti-sense	L1PREC2_dup1338|chr3:98831351-98834041:-|1.380298648680358|0.2119742938869221|2.7|429.0|123|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.322021484375	2	531.323328	1060.6321	-2.3073	-0.0012259	-1.4241	-0.00075667	-3.7314	-0.0019826	531.3224308363493	124.85	1.1856	123.46	123.13	124.31	-1.3908					58	22	3	0	0	0	0.74679	1	11865	11865		28.254	0	1	153300			34362	14791	28270	28297	37841	37841					0.10421282384800179
LQIWTVVD	8	Unmodified	_LQIWTVVD_					0	0	0		ENSG00000135686|ENST00000564996|KLHL36;nc|ENSG00000135686|Q8N4N3-2|KLHL36	ENSG00000135686|ENST00000564996|KLHL36	ENSG00000135686|ENST00000564996|KLHL36	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.2898864746094	2	487.271293	972.528032	0.90154	0.00043929	-1.6285	-0.00079351	-0.72694	-0.00035422	487.27041244058097	97.548	0.91631	95.17	94.708	95.624	-2.3786					24	17	2	0	0	0	0.028476	1	8607	8607		49.442	5.3247	1	14091			34363	4401	28271	28298	37842	37842					0.04066955557277652
LQKASKKVF	9	Unmodified	_LQKASKKVF_					0	0	0			REV__tr|A0A553SGZ7|A0A553SGZ7_NIACIDihydroxy-aciddehydrataseOS=NialliacirculansOX=1397GN=ilvDPE=3SV=1	REV__tr|A0A553SGZ7|A0A553SGZ7_NIACIDihydroxy-aciddehydrataseOS=NialliacirculansOX=1397GN=ilvDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	524.8264770507812	2	524.829309	1047.64407	-4.3888	-0.0023034	0.2202	0.00011557	-4.1686	-0.0021878	524.8292785030237	156.45	1.4045	156.23	155.89	157.3	-0.22696					98	36	4	0	0	0	0.69123	1	15966	15966		20.947	0	1	556080	+		34364	29756	28272	28299	37843	37843					0.12214899127980061
LQKASKKVF	9	Unmodified	_LQKASKKVF_					0	0	0			REV__tr|A0A553SGZ7|A0A553SGZ7_NIACIDihydroxy-aciddehydrataseOS=NialliacirculansOX=1397GN=ilvDPE=3SV=1	REV__tr|A0A553SGZ7|A0A553SGZ7_NIACIDihydroxy-aciddehydrataseOS=NialliacirculansOX=1397GN=ilvDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	524.8267822265625	2	524.829309	1047.64407	-6.4209	-0.0033699	2.2692	0.001191	-4.1517	-0.0021789	524.8303693371411	156.49	1.5557	155.32	154.95	156.51	-1.1687					100	33	5	0	0	0	0.33652	2	13468	13456;13468		58.782	9.3404	1	1025700	+		34365	29756	28272	28299	37844;37845	37845					0.12214899127980061
LQKASKKVF	9	Unmodified	_LQKASKKVF_					0	0	0			REV__tr|A0A553SGZ7|A0A553SGZ7_NIACIDihydroxy-aciddehydrataseOS=NialliacirculansOX=1397GN=ilvDPE=3SV=1	REV__tr|A0A553SGZ7|A0A553SGZ7_NIACIDihydroxy-aciddehydrataseOS=NialliacirculansOX=1397GN=ilvDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.8268432617188	2	524.829309	1047.64407	-5.767	-0.0030267	1.6173	0.0008488	-4.1497	-0.0021779	524.8300427930473	156.94	1.6972	155.39	155.01	156.7	-1.545					136	47	6	0	0	0	0.48324	1	15523	15523		44.117	6.9577	1	1010500	+		34366	29756	28272	28299	37846	37846					0.12214899127980061
LQKEQRQKME	10	Unmodified	_LQKEQRQKME_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	OvCa9_classI_Rep2	2	440.7477111816406	3	439.902966	1316.68707	1.6265	0.00071549	-3.0166	-0.001327	-1.3901	-0.00061153	439.9012726087057	43.501	0.49562	40.791	40.509	41.005	-2.7097					13	9	2	0	0	0	0.027142	1	2422	2422		20.837	3.004	1	12568			34367	7566	28273	28300	37847	37847					0.04139301123086625
LQKERSSTL	9	Unmodified	_LQKERSSTL_					0	0	0			REV__ENSG00000135913|ENST00000258399|USP37	REV__ENSG00000135913|ENST00000258399|USP37	MULTI-MSMS	OvCa9_classI_Rep3	3	531.3037109375	2	531.301113	1060.58767	1.5211	0.00080816	1.9445	0.0010331	3.4656	0.0018413	531.3020896930936	122.17	1.3111	121.14	120.8	122.11	-1.0286					58	24	4	0	0	0	0.27001	1	9374	9374		66.429	3.123	1	266520	+		34368	19334	28274	28301	37848	37848					0.0598022650067378
LQKFLAEEL	9	Unmodified	_LQKFLAEEL_					0	0	0			REV__tr|A0A553SG28|A0A553SG28_NIACIUPF0229proteinCEQ21_09960OS=NialliacirculansOX=1397GN=yhbHPE=3SV=1	REV__tr|A0A553SG28|A0A553SG28_NIACIUPF0229proteinCEQ21_09960OS=NialliacirculansOX=1397GN=yhbHPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	545.829345703125	2	545.810782	1089.60701	0.021655	1.182E-05	-1.9225	-0.0010493	-1.9008	-0.0010375	545.809110306934	96.09	0.74601	95.062	94.813	95.559	-1.0281					23	14	3	0	0	0	0.027433	1	8637	8637		64.207	25.401	1	16782	+		34369	29653	28275	28302	37849	37849					0.0657918279155183
LQKFLAEEL	9	Unmodified	_LQKFLAEEL_					0	0	0			REV__tr|A0A553SG28|A0A553SG28_NIACIUPF0229proteinCEQ21_09960OS=NialliacirculansOX=1397GN=yhbHPE=3SV=1	REV__tr|A0A553SG28|A0A553SG28_NIACIUPF0229proteinCEQ21_09960OS=NialliacirculansOX=1397GN=yhbHPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	545.810782	1089.60701	-1.1125	-0.00060723	-7.2672	-0.0039665	-8.3797	-0.0045738	546.3079976336896	96.672	0.26012	94.843	94.724	94.984	-1.8286	-0.10941	-0.0032532	NaN	90.37	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10404	+		34370	29653	28275	28302							0.0657918279155183
LQKGKTSDN	9	Unmodified	_LQKGKTSDN_					0	0	0		ENST00000405709.6_1_7:110303508-110303604:-|nuORF	ENST00000405709.6_1_7:110303508-110303604:-|nuORF	ENST00000405709.6_1_7:110303508-110303604:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.78900146484375	2	495.764363	989.514173	3.2341	0.0016033	-1.1996	-0.00059472	2.0345	0.0010086	495.76561214876983	88.151	0.75529	88.151	87.712	88.467	0					23	17	2	0	0	0	0.027462	1	9347	9347		49.536	8.7579	1	215400			34371	11469	28276	28303	37850	37850					0.018996780581687744
LQKGLDKEPN	10	Unmodified	_LQKGLDKEPN_					0	0	0		ENST00000550135.5_1_19:58514296-58514610:+|nuORF	ENST00000550135.5_1_19:58514296-58514610:+|nuORF	ENST00000550135.5_1_19:58514296-58514610:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.7632446289062	2	571.31422	1140.61389	-0.87591	-0.00050042	2.0507	0.0011716	1.1748	0.00067115	571.8174487732316	42.111	0.77966	42.111	41.55	42.329	0					33	17	3	0	0	0	0.026606	1	2621	2621		44.377	0	1	91228			34372	13580	28277	28304	37851	37851					0.049204956721496274
LQKIHIDVL	9	Unmodified	_LQKIHIDVL_					0	0	0		ENSG00000156671|ENST00000542569|SAMD8;nc|ENSG00000156671|Q96LT4-2|SAMD8	ENSG00000156671|ENST00000542569|SAMD8	ENSG00000156671|ENST00000542569|SAMD8	MULTI-MSMS	OvCa99_classI_Rep5	1	539.8341674804688	2	539.834591	1077.65463	1.0044	0.0005422	-3.0771	-0.0016611	-2.0727	-0.0011189	539.8329734873671	154.19	1.7914	154.19	153.69	155.48	0					99	35	4	0	0	0	0.46377	1	18063	18063		45.952	1.4209	1	1101400			34373	5852	28278	28305	37852	37852					0.11890881782414908
LQKIICVIK	9	Unmodified	_LQKIICVIK_					0	0	0		ENST00000554171.1_3_14:42170598-42236083:+|nuORF	ENST00000554171.1_3_14:42170598-42236083:+|nuORF	ENST00000554171.1_3_14:42170598-42236083:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	529.3412475585938	2	529.343738	1056.67292	-1.2903	-0.00068304	-1.3462	-0.00071261	-2.6366	-0.0013956	529.342852686274	137.98	1.4177	137.76	137.44	138.86	-0.22696					43	28	2	0	0	0	0.70177	1	13764	13764		17.365	0	1	35179			34374	13633	28279	28306	37853	37853					0.14685300432756776
LQKILSQREK	10	Unmodified	_LQKILSQREK_					0	0	0		tr|A0A553SU86|A0A553SU86_NIACIBlaI/MecI/CopYfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_06545PE=3SV=1	tr|A0A553SU86|A0A553SU86_NIACIBlaI/MecI/CopYfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_06545PE=3SV=1	tr|A0A553SU86|A0A553SU86_NIACIBlaI/MecI/CopYfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_06545PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.9082946777344	3	414.922467	1241.74557	0.13135	5.4498E-05	-3.9803	-0.0016515	-3.8489	-0.001597	414.92111584824033	42.431	0.38363	42.431	42.156	42.539	0					24	8	4	0	0	0	0.027308	1	2698	2698		18.531	0	1	699060			34375	34582	28280	28307	37854	37854					0.13436725759879664
LQKIQCTLQ	9	Unmodified	_LQKIQCTLQ_					0	0	0		ENSG00000139428|ENST00000545712|MMAB	ENSG00000139428|ENST00000545712|MMAB	ENSG00000139428|ENST00000545712|MMAB	MULTI-SECPEP	OvCa9_classI_Rep2	2	538.32861328125	2	537.802434	1073.59032	-0.75249	-0.00040469	-3.0337	-0.0016315	-3.7862	-0.0020362	537.800445497391	82.916	1.3156	81.317	81.115	82.43	-1.5989					37	26	2	0	0	0	0.027304	1	7128	7128		87.696	2.5356	1	42197			34376	4774	28281	28308	37855	37855					0.056463586339759786
LQKKKKRG	8	Unmodified	_LQKKKKRG_					0	0	0		HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|54|2|sense	REV__ENST00000394679.9_2_17:30677304-30677343:+|nuORF	REV__ENST00000394679.9_2_17:30677304-30677343:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.32391357421875	2	493.335093	984.655633	-0.10071	-4.9682E-05	2.1491	0.0010602	2.0484	0.0010106	493.33622695695607	79.367	0.30284	77.027	76.852	77.155	-2.3399					9	5	2	0	0	0	0.028476	1	4265	4265		33.516	0	1	35729			34377	14477	28282	28309	37856	37856					0.1626914094198355
LQKKQSNL	8	Unmodified	_LQKKQSNL_					0	0	0		ENSG00000109686|ENST00000604030|SH3D19;nc|ENSG00000109686|Q5HYK7-3|SH3D19;nc|ENSG00000109686|Q5HYK7-2|SH3D19;nc|ENSG00000109686|Q5HYK7|SH3D19;LRBA-SH3D19|2|fusion;ENST00000478503.6_1_4:152043245-152086876:-|nuORF;LRBA-SH3D19|3|fusion;nc|ENSG00000109686|Q5HYK7-5|SH3D19;nc|ENSG00000109686|Q5HYK7-4|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.2619934082031	2	479.787641	957.56073	-0.067722	-3.2492E-05	-0.55232	-0.000265	-0.62005	-0.00029749	479.7873240313565	47.088	1.0124	44.015	43.707	44.72	-3.0724					37	19	3	0	0	0	0.028476	1	2498	2498		29.15	0	1	82863			34378	2727	28283	28310	37857	37857					0.0802516268013278
LQKKVCYNDW	10	Unmodified	_LQKKVCYNDW_					0	0	0			REV__nc|ENSG00000132141|Q92526-3|CCT6B	REV__nc|ENSG00000132141|Q92526-3|CCT6B	MULTI-SECPEP	OvCa99_classI_Rep5	1	432.24371337890625	3	432.885024	1295.63324	-0.78983	-0.00034191	3.6113	0.0015633	2.8215	0.0012214	432.8864919295764	43.715	0.1721	43.715	43.608	43.78	0					5	3	2	0	0	0	0.027033	1	2904	2904		33.922	0	1	21000	+		34379	19054	28284	28311	37858	37858					-0.0027487130862482445
LQKKVTAL	8	Unmodified	_LQKKVTAL_					0	0	0			REV__nc|ENSG00000156697|Q9BVJ6-3|UTP14A;REV__ENSG00000253797|ENST00000521776|UTP14C	REV__ENSG00000253797|ENST00000521776|UTP14C	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.2701110839844	2	450.797478	899.580402	0.72718	0.00032781	2.3492	0.001059	3.0764	0.0013868	450.7983718504119	61.77	0.61221	58.312	58.103	58.715	-3.4577					17	12	2	0	0	0	0.028476	1	4285	4285		29.15	0	1	49693	+		34380	20493;23507	28285	28312	37859	37859					0.12659538690888894
LQKLMDKNE	9	Unmodified	_LQKLMDKNE_					0	0	0		tr|A0A7D6VRB6|A0A7D6VRB6_9CLOTAlgX/AlgJSGNHhydrolase-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00255PE=4SV=1	tr|A0A7D6VRB6|A0A7D6VRB6_9CLOTAlgX/AlgJSGNHhydrolase-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00255PE=4SV=1	tr|A0A7D6VRB6|A0A7D6VRB6_9CLOTAlgX/AlgJSGNHhydrolase-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00255PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	559.7960815429688	2	559.797349	1117.58014	-1.4067	-0.00078745	-2.1187	-0.001186	-3.5253	-0.0019735	559.7962962944905	84.284	1.6555	82.023	81.79	83.445	-2.261					82	33	3	0	0	0	0.27001	1	4883	4883		66.429	9.7082	1	1750700			34381	34911	28286	28313	37860	37860					0.026057509087195285
LQKLPKLLC	9	Unmodified	_LQKLPKLLC_					0	0	0		ENSG00000147432|ENST00000289957|CHRNB3	ENSG00000147432|ENST00000289957|CHRNB3	ENSG00000147432|ENST00000289957|CHRNB3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.2965698242188	2	528.335913	1054.65727	-0.85694	-0.00045275	4.2385	0.0022393	3.3815	0.0017866	528.3381535067124	22.072	0.30287	20.733	20.523	20.826	-1.3386					7	5	2	0	0	0	0.027462	1	222	222		17.365	0	1	13034			34382	5357	28287	28314	37861	37861					0.13213013915719785
LQKMEKEIPE	10	Unmodified	_LQKMEKEIPE_					0	0	0		ENST00000578618.5_1_18:5398595-5399237:-|nuORF	ENST00000578618.5_1_18:5398595-5399237:-|nuORF	ENST00000578618.5_1_18:5398595-5399237:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	622.8655395507812	2	622.831388	1243.64822	3.9446	0.0024568	-0.75026	-0.00046728	3.1943	0.0019895	623.3314680878218	132.23	0.31129	130.73	130.54	130.85	-1.5015					6	5	2	0	0	0	0.026895	1	12708	12708		67.494	17.958	1	4335.4			34383	13968	28288	28315	37862	37862					0.0361457576873363
LQKNEQQQE	9	Unmodified	_LQKNEQQQE_					0	0	0		tr|A0A553STM5|A0A553STM5_NIACIPectinesteraseOS=NialliacirculansOX=1397GN=CEQ21_05405PE=3SV=1	tr|A0A553STM5|A0A553STM5_NIACIPectinesteraseOS=NialliacirculansOX=1397GN=CEQ21_05405PE=3SV=1	tr|A0A553STM5|A0A553STM5_NIACIPectinesteraseOS=NialliacirculansOX=1397GN=CEQ21_05405PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	573.265625	2	572.783284	1143.55202	-0.9923	-0.00056837	3.8521	0.0022064	2.8598	0.0016381	572.7853809758859	75.039	0.98762	72.629	72.39	73.378	-2.4106					39	19	3	0	0	0	0.027402	1	3849	3849		56.721	13.857	1	77149			34384	34505	28289	28316	37863	37863					-0.01401855747008085
LQKNGLLL	8	Unmodified	_LQKNGLLL_					0	0	0			REV__ENST00000533377.1_1_8:145066406-145067006:+|nuORF	REV__ENST00000533377.1_1_8:145066406-145067006:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.6773986816406	2	449.789653	897.564752	0.87665	0.00039431	-1.1713	-0.00052683	-0.29463	-0.00013252	449.7890853843789	109.75	0.79075	108.15	107.75	108.54	-1.6011					23	14	2	0	0	0	0.028476	1	10104	10104		14.664	0	1	27691	+		34385	22074	28290	28317	37864	37864					0.11187252173851903
LQKPLDPTI	9	Unmodified	_LQKPLDPTI_					0	0	0		TSHZ2|p.P487L|1|0.24|ENSG00000182463|chr20:53254918-53254918|C/T|missense_variant;nc|ENSG00000182463|Q9NRE2-2|TSHZ2;ENSG00000182463|ENST00000371497|TSHZ2	TSHZ2|p.P487L|1|0.24|ENSG00000182463|chr20:53254918-53254918|C/T|missense_variant	TSHZ2|p.P487L|1|0.24|ENSG00000182463|chr20:53254918-53254918|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.8048706054688	2	512.8055	1023.59645	3.2957	0.0016901	-3.2916	-0.0016879	0.0041479	2.1271E-06	512.8036235885786	131.04	1.1454	129.57	129.26	130.4	-1.4779					53	23	3	0	0	0	0.42676	1	12611	12611		49.442	5.0644	1	241460			34386	8001	28291	28318	37865	37865					0.0855920013711966
LQKPPRVVTPM	11	Unmodified	_LQKPPRVVTPM_					0	0	0			REV__nc|ENSG00000133657|Q9H7F0-2|ATP13A3	REV__nc|ENSG00000133657|Q9H7F0-2|ATP13A3	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3711547851562	2	633.373558	1264.73256	-4.8823	-0.0030923	-1.8485	-0.0011708	-6.7309	-0.0042631	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.69081	1	13263	13263		32.812	1.2826	1	765700	+		34387	15675	28292	28319	37866	37866					0.11078571376128821
LQKPSVFGN	9	Unmodified	_LQKPSVFGN_					0	0	0		ENSG00000126653|ENST00000247026|NSRP1;ENST00000467446.6_1_17:28445110-28495141:+|nuORF;ENST00000444067.2_1_1:78312795-78313113:+|nuORF	ENSG00000126653|ENST00000247026|NSRP1	ENSG00000126653|ENST00000247026|NSRP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.78900146484375	2	495.274367	988.53418	2.3621	0.0011699	-0.14938	-7.3986E-05	2.2127	0.0010959	495.27435201097137	87.887	0.4586	87.887	87.586	88.044	0					16	10	2	0	0	0	0.027462	1	9347	9347		19.997	0	1	163860			34388	3791	28293	28320	37867	37867					0.03945473788803611
LQKQWDLK	8	Unmodified	_LQKQWDLK_					0	0	0			REV__tr|A0A553SS61|A0A553SS61_NIACIAspartateaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_02485PE=3SV=1	REV__tr|A0A553SS61|A0A553SS61_NIACIAspartateaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_02485PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.81396484375	2	529.803291	1057.59203	-0.69524	-0.00036834	3.263	0.0017287	2.5677	0.0013604	529.8048647904756	68.216	0.73274	68.216	67.916	68.649	0					36	17	3	0	0	0	0.45246	1	6432	6432		82.305	0	1	2958300	+		34389	30807	28294	28321	37868	37868					0.06553735714214781
LQKRRSAASTK	11	Unmodified	_LQKRRSAASTK_					0	0	0		chr1:172608802-172609819|126|12.72|0.7|4.18|+|1|SUCO,None|2	chr1:172608802-172609819|126|12.72|0.7|4.18|+|1|SUCO,None|2	chr1:172608802-172609819|126|12.72|0.7|4.18|+|1|SUCO,None|2	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.5585021972656	3	415.917716	1244.73132	0.23163	9.634E-05	2.7068	0.0011258	2.9385	0.0012222	415.9186887847339	55.637	0.57174	55.637	55.401	55.973	0					18	13	2	0	0	0	0.025773	1	4541	4541		13.73	0	1	976990			34390	248	28295	28322	37869	37869					0.11874073331591717
LQKSGNRPE	9	Unmodified	_LQKSGNRPE_					0	0	0		ENST00000461731.5_1_2:220094544-220099084:+|nuORF;ENST00000474225.5_1_2:220094544-220097914:+|nuORF;ENST00000453432.5_1_2:220094544-220097018:+|nuORF;ENST00000464763.5_1_2:220094544-220095147:+|nuORF	ENST00000461731.5_1_2:220094544-220099084:+|nuORF	ENST00000461731.5_1_2:220094544-220099084:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.8165283203125	2	514.777805	1027.54106	-0.25344	-0.00013046	3.8035	0.001958	3.5501	0.0018275	514.779474075212	76.387	0.76053	73.448	72.79	73.55	-2.9389					27	15	2	0	0	0	0.027453	1	5998	5998		30.318	10.321	1	56186			34391	12183	28296	28323	37870	37870					0.028387866693947217
LQKSRRSTS	9	Unmodified	_LQKSRRSTS_					0	0	0		ENST00000395443.6_1_3:49094899-49114251:-|nuORF	ENST00000395443.6_1_3:49094899-49114251:-|nuORF	ENST00000395443.6_1_3:49094899-49114251:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	531.7991943359375	2	531.804354	1061.59415	-2.0802	-0.0011063	-3.3166	-0.0017638	-5.3968	-0.00287	531.8016786180416	117.39	1.3379	117.26	116.72	118.05	-0.12869					51	26	4	0	0	0	0.50149	1	11254	11254		42.396	3.1433	1	182060			34392	11288	28297	28324	37871	37871					0.06582164452061079
LQKTILPSPLE	11	Unmodified	_LQKTILPSPLE_					0	0	0			REV__ENSG00000097096|ENST00000341460|SYDE2	REV__ENSG00000097096|ENST00000341460|SYDE2	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8676147460938	2	619.871371	1237.72819	-1.8762	-0.001163	-1.2328	-0.00076421	-3.109	-0.0019272	619.8704234308321	147.79	3.8764	146.35	144.25	148.12	-1.4351					189	77	4	0	0	0	0.71789	1	14571	14571		23.523	0.48021	1	269210	+		34393	17312	28298	28325	37872	37872					0.11883385434225602
LQKTRGDSRPA	11	Unmodified	_LQKTRGDSRPA_					0	0	0		ENSG00000162849|ENST00000407071|KIF26B;nc|ENSG00000162849|Q2KJY2-2|KIF26B	ENSG00000162849|ENST00000407071|KIF26B	ENSG00000162849|ENST00000407071|KIF26B	MULTI-SECPEP	OvCa99_classI_Rep5	1	410.76123046875	3	410.230071	1227.66838	0.0067756	2.7796E-06	2.8044	0.0011505	2.8112	0.0011532	410.23131869834737	34.709	0.46605	34.709	34.491	34.957	0					16	9	3	0	0	0	0.025668	1	1680	1680		28.577	17.99	1	121430			34394	6240	28299	28326	37873	37873					0.06365507543569038
LQKYLEGY	8	Unmodified	_LQKYLEGY_					0	0	0		nc|ENSG00000138669|Q13237-2|PRKG2;ENSG00000138669|ENST00000264399|PRKG2	nc|ENSG00000138669|Q13237-2|PRKG2	nc|ENSG00000138669|Q13237-2|PRKG2	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3280334472656	2	507.26875	1012.52295	0.043032	2.1829E-05	-1.5198	-0.00077094	-1.4768	-0.00074911	507.2683644548533	65.141	0.23535	65.141	64.995	65.231	0					7	5	2	0	0	0	0.028476	1	5946	5946		33.516	11.813	1	165730			34395	4709	28300	28327	37874	37874					0.017186516946594566
LQLARLILL	9	Unmodified	_LQLARLILL_					0	0	0			REV__ENSG00000154767|ENST00000285021|XPC	REV__ENSG00000154767|ENST00000285021|XPC	MULTI-SECPEP	OvCa9_classI_Rep2	2	527.3489990234375	2	526.863152	1051.71175	-1.0118	-0.00053309	0.62432	0.00032893	-0.38749	-0.00020416	526.8635394243286	99.653	0.69449	98.822	98.567	99.261	-0.83052					18	13	2	0	0	0	0.027462	1	9133	9133		24.203	13.937	1	13158	+		34396	20397	28301	28328	37875	37875					0.18796349058811757
LQLARRLH	8	Unmodified	_LQLARRLH_					0	0	0		nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST	nc|ENSG00000151914|Q03001|DST	nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	OvCa9_classI_Rep2	2	504.79461669921875	2	503.817067	1005.61958	0.060232	3.0346E-05	1.9667	0.00099086	2.0269	0.0010212	503.8179590648151	66.393	0.7462	63.697	63.418	64.164	-2.6958					27	14	3	0	0	0	0.028476	1	5113	5113		25.45	2.4077	1	32438			34397	5594	28302	28329	37876	37876					0.11699683765118607
LQLARRLH	8	Unmodified	_LQLARRLH_					0	0	0		nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST	nc|ENSG00000151914|Q03001|DST	nc|ENSG00000151914|Q03001|DST	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	503.817067	1005.61958	0.42856	0.00021592	2.2224	0.0011197	2.651	0.0013356	503.81774649907123	67.254	0.54613	63.764	63.59	64.136	-3.4902	0.033436	0.00016758	NaN	33.516	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35830			34398	5594	28302	28329							0.11699683765118607
LQLAWLFQ	8	Unmodified	_LQLAWLFQ_					0	0	0		ENST00000452728.5_1_10:97664620-97710256:-|nuORF	ENST00000452728.5_1_10:97664620-97710256:-|nuORF	ENST00000452728.5_1_10:97664620-97710256:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.2662353515625	2	509.789653	1017.56475	-0.60058	-0.00030617	-2.1505	-0.0010963	-2.7511	-0.0014025	509.7888397385056	28.784	0.19956	28.784	28.688	28.888	0					5	3	2	0	0	0	0.028476	1	979	979		35.201	22.994	1	16397			34399	12057	28303	28330	37877	37877					0.05667252173839188
LQLCSVFFTV	10	Unmodified	_LQLCSVFFTV_					0	0	0		ENSG00000144730|ENST00000296318|IL17RD;ENST00000479825.1_1_3:57198960-57199332:-|nuORF	ENSG00000144730|ENST00000296318|IL17RD	ENSG00000144730|ENST00000296318|IL17RD	MSMS	OvCa9_classI_Rep4_	4	578.8107299804688	2	578.807185	1155.59982	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.586	1	59.129	58.629	59.629	-3.4577								0	0	0	0.13951	1	4355	4355		52.937	13.684	1				34400	5178	28304	28331	37878	37878					0.028241269194722918
LQLDIAFKL	9	Unmodified	_LQLDIAFKL_					0	0	0		ENSG00000116729|ENST00000262348|WLS;nc|ENSG00000116729|Q5T9L3-2|WLS	ENSG00000116729|ENST00000262348|WLS	ENSG00000116729|ENST00000262348|WLS	MULTI-MSMS	OvCa99_classI_Rep5	1	530.8256225585938	2	530.823692	1059.63283	2.1071	0.0011185	-0.43242	-0.00022954	1.6746	0.00088894	530.8233243756563	136.88	1.0103	136.88	136.58	137.59	0					40	20	3	0	0	0	0.17606	1	15969	15969		80.455	0.74203	1	179330			34401	3203	28305	28332	37879	37879					0.10540077033851958
LQLFGYIFVIL	11	Unmodified	_LQLFGYIFVIL_					0	0	0			REV__tr|A0A553SNB0|A0A553SNB0_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_24135PE=4SV=1	REV__tr|A0A553SNB0|A0A553SNB0_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_24135PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	442.6018981933594	3	442.600442	1324.7795	0.47843	0.00021175	2.7187	0.0012033	3.1971	0.0014151	442.60159734649346	49.766	2.5262	47.006	46.523	49.049	-2.7603					125	50	5	0	0	0	0.70761	1	3217	3217		27.047	1.9213	1	549840	+		34402	30404	28306	28333	37880	37880					0.1300975419894712
LQLFREAGG	9	Unmodified	_LQLFREAGG_					0	0	0		ENSG00000142102|ENST00000409548|PGGHG;ENST00000476372.1_1_11:291984-293434:+|nuORF;ENST00000474221.5_1_11:291984-293434:+|nuORF	ENSG00000142102|ENST00000409548|PGGHG	ENSG00000142102|ENST00000409548|PGGHG	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.7830810546875	2	495.771991	989.529429	0.072379	3.5884E-05	-1.1552	-0.00057274	-1.0829	-0.00053685	495.77138802416147	61.805	1.0041	58.347	58.057	59.061	-3.4577					25	20	2	0	0	0	0.027462	1	4342	4342		30.504	4.9296	1	75827			34403	4954	28307	28334	37881	37881					0.03424589646044751
LQLIKRRN	8	Unmodified	_LQLIKRRN_					0	0	0			REV__nc|ENSG00000133863|Q9BXT5|TEX15	REV__nc|ENSG00000133863|Q9BXT5|TEX15	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.797607421875	2	520.838	1039.66145	0.58525	0.00030482	-1.2491	-0.00065056	-0.66382	-0.00034574	520.8377645248255	36.313	0.20098	33.465	33.288	33.489	-2.849					5	3	2	0	0	0	0.028476	1	1237	1237		35.201	0	1	7799.5	+		34404	19162	28308	28335	37882	37882					0.14320239453650174
LQLKASPI	8	Unmodified	_LQLKASPI_					0	0	0			REV__ENST00000264990.10_1_3:132297708-132322075:-|nuORF	REV__ENST00000264990.10_1_3:132297708-132322075:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.26251220703125	2	435.276378	868.538203	-0.17433	-7.5882E-05	-0.0081335	-3.5403E-06	-0.18247	-7.9423E-05	435.2762400539857	65.579	1.0661	62.093	61.647	62.713	-3.4854					52	21	3	0	0	0	0.028476	1	4694	4694		19.36	1.0356	1	675270	+		34405	24025	28309	28336	37883	37883					0.09867563282523406
LQLKEAKHI	9	Unmodified	_LQLKEAKHI_					0	0	0		ENST00000368528.3_1_3:27674554-27675208:+|nuORF	ENST00000368528.3_1_3:27674554-27675208:+|nuORF	ENST00000368528.3_1_3:27674554-27675208:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	540.3330078125	2	540.332216	1078.64988	-0.74483	-0.00040245	0.5655	0.00030556	-0.17933	-9.6897E-05	540.3324212311496	41.876	1.0727	41.876	41.681	42.753	0					50	24	4	0	0	0	0.051592	1	2645	2645		117.81	0	1	1711300			34406	10875	28310	28337	37884	37884					0.11369997639667417
LQLKQSKRV	9	Unmodified	_LQLKQSKRV_					0	0	0		ENSG00000185477|ENST00000609438|GPRIN3	ENSG00000185477|ENST00000609438|GPRIN3	ENSG00000185477|ENST00000609438|GPRIN3	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.8427124023438	2	550.35094	1098.68733	-0.61237	-0.00033702	-2.8044	-0.0015434	-3.4168	-0.0018804	550.3495595157117	40.48	0.41875	40.48	40.247	40.666	0					19	8	3	0	0	0	0.027462	1	2454	2454		23.042	0	1	164380			34407	8255	28311	28338	37885	37885					0.14193088905290097
LQLLDSDQEI	10	Unmodified	_LQLLDSDQEI_					0	0	0		tr|A0A553SHM8|A0A553SHM8_NIACIParB/RepB/Spo0JfamilypartitionproteinOS=NialliacirculansOX=1397GN=CEQ21_13245PE=3SV=1	tr|A0A553SHM8|A0A553SHM8_NIACIParB/RepB/Spo0JfamilypartitionproteinOS=NialliacirculansOX=1397GN=CEQ21_13245PE=3SV=1	tr|A0A553SHM8|A0A553SHM8_NIACIParB/RepB/Spo0JfamilypartitionproteinOS=NialliacirculansOX=1397GN=CEQ21_13245PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.187744140625	2	587.303518	1172.59248	-0.50036	-0.00029386	0.74229	0.00043595	0.24193	0.00014208	587.3037569513917	40.619	0.32169	40.619	40.432	40.754	0					9	6	2	0	0	0	0.026653	1	2456	2456		49.536	13.089	1	53911			34408	33288	28312	28339	37886	37886					0.013090658527517007
LQLLELPPE	9	Unmodified	_LQLLELPPE_					0	0	0		ENSG00000213722|ENST00000375789|DDAH2;ENST00000469963.5_1_6:31696345-31696947:-|nuORF	ENSG00000213722|ENST00000375789|DDAH2	ENSG00000213722|ENST00000375789|DDAH2	MULTI-MSMS	OvCa99_classI_Rep5	1	526.3063354492188	2	526.305332	1050.59611	2.3514	0.0012375	0.28819	0.00015167	2.6396	0.0013892	526.3055673123216	75.23	0.84386	75.23	74.92	75.764	0					45	20	4	0	0	0	0.12515	1	7493	7493		90.37	8.0648	1	7423500			34409	9143	28313	28340	37887	37887					0.07283780417265007
LQLLELPPE	9	Unmodified	_LQLLELPPE_					0	0	0		ENSG00000213722|ENST00000375789|DDAH2;ENST00000469963.5_1_6:31696345-31696947:-|nuORF	ENSG00000213722|ENST00000375789|DDAH2	ENSG00000213722|ENST00000375789|DDAH2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	526.305332	1050.59611	-1.2727	-0.00066981	6.5425	0.0034433	5.2698	0.0027735	526.3075820302964	77.955	0.29353	75.602	75.353	75.647	-2.3527	0.18631	0.006433	NaN	90.37	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8265.1			34410	9143	28313	28340							0.07283780417265007
LQLLGGPF	8	Unmodified	_LQLLGGPF_					0	0	0		ENSG00000197093|ENST00000360039|GAL3ST4	ENSG00000197093|ENST00000360039|GAL3ST4	ENSG00000197093|ENST00000360039|GAL3ST4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	422.1868591308594	2	422.749996	843.485439	-0.13252	-5.6021E-05	-0.73404	-0.00031032	-0.86656	-0.00036634	422.7480595236742	56.626	0.65725	53.332	52.92	53.577	-3.2944					18	12	2	0	0	0	0.028476	1	3645	3645		35.201	13.498	1	11578			34411	8675	28314	28341	37888	37888					0.05743605219709025
LQLLHEYKRNT	11	Unmodified	_LQLLHEYKRNT_					0	0	0			REV__ENSG00000118898|ENST00000345988|PPL	REV__ENSG00000118898|ENST00000345988|PPL	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.21905517578125	3	472.264892	1413.77285	-0.079281	-3.7442E-05	-2.0856	-0.00098497	-2.1649	-0.0010224	472.26432471051606	47.34	0.38671	47.34	47.121	47.508	0					21	8	3	0	0	0	0.026132	1	3420	3420		10.998	0	1	271110	+		34412	18419	28315	28342	37889	37889					0.08251209300260598
LQLLHLSLV	9	Unmodified	_LQLLHLSLV_					0	0	0			REV__ENSG00000153207|ENST00000648844|AHCTF1	REV__ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MSMS	OvCa99_classI_Rep5	1	518.3335571289062	2	518.331685	1034.64882	0.70335	0.00036457	1.2662	0.00065631	1.9696	0.0010209	518.3322929574908	139.16	0.62997	139.16	138.88	139.51	0					21	12	2	0	0	0	0.55588	1	16254	16254		37.159	1.5408	1	118620	+		34413	20327	28316	28343	37890	37890					0.1328778327076634
LQLLHLSLV	9	Unmodified	_LQLLHLSLV_					0	0	0			REV__ENSG00000153207|ENST00000648844|AHCTF1	REV__ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	518.331685	1034.64882	0.70335	0.00036457	1.2662	0.00065631	1.9696	0.0010209	518.3322929574908	139.16	0.62997	139.16	138.88	139.51	0	-0.066887	0.00037688	NaN	37.159	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118620	+		34414	20327	28316	28343							0.1328778327076634
LQLLHLSLV	9	Unmodified	_LQLLHLSLV_					0	0	0			REV__ENSG00000153207|ENST00000648844|AHCTF1	REV__ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	518.331685	1034.64882	-0.77873	-0.00040364	0.47193	0.00024461	-0.30681	-0.00015903	518.3318032066354	139.52	0.73856	139.3	139.01	139.75	-0.22696	0.066887	-0.00044652	NaN	37.159	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19151	+		34415	20327	28316	28343							0.1328778327076634
LQLLPLKLL	9	Unmodified	_LQLLPLKLL_					0	0	0		ENST00000432879.5_1_22:20103490-20103634:+|nuORF	ENST00000432879.5_1_22:20103490-20103634:+|nuORF	ENST00000432879.5_1_22:20103490-20103634:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	526.3705444335938	2	525.867903	1049.72125	1.0994	0.00057812	1.3354	0.00070222	2.4347	0.0012803	525.8684810341905	146.94	1.0281	146.94	146.62	147.65	0					55	20	4	0	0	0	0.16524	1	17169	17169		82.305	0	1	839060			34416	11817	28317	28344	37891	37891					0.19838117344329476
LQLLQNTCLD	10	Unmodified	_LQLLQNTCLD_					0	0	0		ENSG00000186088|ENST00000257626|GSAP;ENST00000334003.11_1_7:76959552-77026708:-|nuORF;nc|ENSG00000186088|A4D1B5-3|GSAP;nc|ENSG00000186088|A4D1B5-2|GSAP	ENSG00000186088|ENST00000257626|GSAP	ENSG00000186088|ENST00000257626|GSAP	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.78466796875	2	580.802631	1159.59071	-0.21592	-0.00012541	-3.7404	-0.0021724	-3.9563	-0.0022978	580.8011619575301	62.52	0.32617	62.52	62.335	62.661	0					11	7	2	0	0	0	0.027088	1	5554	5554		26.693	7.3329	1	312560			34417	8312	28318	28345	37892	37892					0.017297335631383248
LQLPRAGVGA	10	Unmodified	_LQLPRAGVGA_					0	0	0		ENST00000361317.6_1_20:62688688-62688904:+|nuORF	ENST00000361317.6_1_20:62688688-62688904:+|nuORF	ENST00000361317.6_1_20:62688688-62688904:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	491.82281494140625	2	491.295633	980.576714	-0.35078	-0.00017234	0.85791	0.00042149	0.50713	0.00024915	491.2958671673894	68.642	1.541	66.022	65.425	66.966	-2.6203					48	30	3	0	0	0	0.026752	1	5358	5358		27.882	0	1	62460			34418	10791	28319	28346	37893	37893					0.08564868917039803
LQLQRRGRRYL	11	Unmodified	_LQLQRRGRRYL_					0	0	0			REV__ENSG00000205138|ENST00000378887|SDHAF1	REV__ENSG00000205138|ENST00000378887|SDHAF1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.95916748046875	3	486.963659	1457.86915	-7.2824	-0.0035463	-2.4216	-0.0011792	-9.704	-0.0047255	486.9623381995862	161.08	3.4384	159.71	158.52	161.96	-1.3692					219	70	4	0	0	0	0.72483	1	13967	13967		17.833	4.3252	1	133400	+		34419	23204	28320	28347	37894	37894					0.15852821650901205
LQLRPMISRRT	11	Oxidation (M)	_LQLRPM(Oxidation (M))ISRRT_		LQLRPM(1)ISRRT		LQLRPM(46)ISRRT	0	0	1			REV__nc|ENSG00000147316|Q8NEM0-3|MCPH1	REV__nc|ENSG00000147316|Q8NEM0-3|MCPH1	MULTI-MSMS	OvCa9_classI_Rep2	2	462.93695068359375	3	462.938122	1385.79254	0.079191	3.666E-05	-3.3354	-0.0015441	-3.2562	-0.0015074	462.9367014144655	44.408	4.3763	41.698	41.303	45.679	-2.7097					263	87	6	0	0	0	0.58642	1	2565	2565		45.908	8.3082	1	4456400	+		34420	20057	28321	28348	37895	37895		467			0.1150726203936756
LQLRREKP	8	Unmodified	_LQLRREKP_					0	0	0		nc|ENSG00000143624|Q68E01-3|INTS3;ENSG00000143624|ENST00000318967|INTS3;nc|ENSG00000143624|Q68E01|INTS3;nc|ENSG00000143624|Q68E01-4|INTS3	nc|ENSG00000143624|Q68E01-3|INTS3	nc|ENSG00000143624|Q68E01-3|INTS3	MULTI-MSMS	OvCa9_classI_Rep2	2	520.322265625	2	520.322183	1038.62981	-0.056752	-2.9529E-05	-0.23196	-0.00012069	-0.28871	-0.00015022	520.321910932652	59.379	1.3543	56.599	56.137	57.491	-2.7801					59	25	4	0	0	0	0.73938	1	4332	4332		31.955	2.8053	1	379380			34421	5079	28322	28349	37896	37896					0.11204246699708165
LQLRTVDRKL	10	Unmodified	_LQLRTVDRKL_					0	0	0		ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	622.314208984375	2	621.388054	1240.76155	-1.1106	-0.00069012	1.2501	0.0007768	0.1395	8.6686E-05	621.3885711524827	43.219	0.42052	40.212	40.063	40.483	-3.0074					10	7	2	0	0	0	0.026666	1	2090	2090		47.657	14.845	1	8560.8			34422	6327	28323	28350	37897	37897					0.15080431996784682
LQLRVTAH	8	Unmodified	_LQLRVTAH_					0	0	0		PCDHGA7|p.L604Ifs*113|1|0.17|ENSG00000253537|chr5:141384708-141384709|-/ATAGACGTGGAAATAATAGATATTAATGACAA|frameshift_variant;nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7;ENSG00000253537|ENST00000518325|PCDHGA7	PCDHGA7|p.L604Ifs*113|1|0.17|ENSG00000253537|chr5:141384708-141384709|-/ATAGACGTGGAAATAATAGATATTAATGACAA|frameshift_variant	PCDHGA7|p.L604Ifs*113|1|0.17|ENSG00000253537|chr5:141384708-141384709|-/ATAGACGTGGAAATAATAGATATTAATGACAA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	469.2839660644531	2	469.282526	936.550499	1.0947	0.00051374	0.33441	0.00015693	1.4291	0.00067067	469.2826117935817	103.24	0.79552	103.24	102.98	103.77	0					40	18	3	0	0	0	0.45246	1	11557	11557		82.305	0	1	2996000			34423	9433	28324	28351	37898	37898					0.07968599745549909
LQLSGDLIL	9	Unmodified	_LQLSGDLIL_					0	0	0			REV__ENSG00000101574|ENST00000574538|METTL4	REV__ENSG00000101574|ENST00000574538|METTL4	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.2921142578125	2	486.292225	970.569897	-1.0418	-0.0005066	0.87582	0.0004259	-0.16594	-8.0694E-05	486.2924735979231	100.47	1.0086	98.208	97.875	98.883	-2.2665					53	19	4	0	0	0	0.35444	1	8993	8993		56.721	1.9447	1	275810	+		34424	17505	28325	28352	37899	37899					0.08343511245811897
LQLSQHQKT	9	Unmodified	_LQLSQHQKT_					0	0	0		ENSG00000197782|ENST00000683561|ZNF780A;nc|ENSG00000197782|O75290-3|ZNF780A	ENSG00000197782|ENST00000683561|ZNF780A	ENSG00000197782|ENST00000683561|ZNF780A	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.7608032226562	2	541.80128	1081.58801	2.0107	0.0010894	3.4485	0.0018684	5.4592	0.0029578	541.8031049124023	85.498	0.4128	85.498	85.292	85.705	0					20	9	3	0	0	0	0.027462	1	8978	8978		40.778	7.9657	1	910870			34425	8749	28326	28353	37900	37900					0.050476462205324424
LQLTAPLLNKT	11	Unmodified	_LQLTAPLLNKT_					0	0	0			REV__UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	REV__UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.368408203125	2	606.371538	1210.72852	-2.0217	-0.0012259	-1.2081	-0.00073258	-3.2298	-0.0019585	606.3706888805716	149.57	2.6994	148.14	147.52	150.22	-1.4344					165	58	4	0	0	0	0.72497	1	14930	14930		16.007	1.8697	1	304910	+		34426	18816	28327	28354	37901	37901					0.13158805154080255
LQLTEPLPQ	9	Unmodified	_LQLTEPLPQ_					0	0	0			REV__ENSG00000080503|ENST00000349721|SMARCA2	REV__ENSG00000080503|ENST00000349721|SMARCA2	MULTI-MSMS	OvCa9_classI_Rep2	2	519.793212890625	2	519.795132	1037.57571	-0.83173	-0.00043233	-1.6752	-0.00087074	-2.5069	-0.0013031	519.7941003158112	120.39	3.5079	120.22	119.69	123.2	-0.17137					148	70	4	0	0	0	0.1243	2	11626	11626;11662		90.601	8.7765	1	553870	+		34427	17055	28328	28355	37902;37903	37902					0.05842609757473838
LQLVAVKPTD	10	Unmodified	_LQLVAVKPTD_					0	0	0			REV__tr|A0A7D6VW89|A0A7D6VW89_9CLOTAbrBfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03130PE=4SV=1	REV__tr|A0A7D6VW89|A0A7D6VW89_9CLOTAbrBfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03130PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.2805786132812	2	542.324057	1082.63356	0.83431	0.00045247	2.2991	0.0012468	3.1334	0.0016993	542.3253561235912	102.02	0.51443	102.02	101.78	102.29	0					14	11	2	0	0	0	0.026674	1	11352	11352		56.434	23.621	1	241590	+		34428	31742	28329	28356	37904	37904					0.09554871682894372
LQLVAVKPTD	10	Unmodified	_LQLVAVKPTD_					0	0	0			REV__tr|A0A7D6VW89|A0A7D6VW89_9CLOTAbrBfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03130PE=4SV=1	REV__tr|A0A7D6VW89|A0A7D6VW89_9CLOTAbrBfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03130PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.324057	1082.63356	-1.4802	-0.00080274	2.7316	0.0014814	1.2515	0.0006787	542.324435815647	102.9	0.68981	102.22	101.98	102.67	-0.68459	0.012793	0.0018113	NaN	65.465	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47916	+		34429	31742	28329	28356							0.09554871682894372
LQLVAVKPTD	10	Unmodified	_LQLVAVKPTD_					0	0	0			REV__tr|A0A7D6VW89|A0A7D6VW89_9CLOTAbrBfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03130PE=4SV=1	REV__tr|A0A7D6VW89|A0A7D6VW89_9CLOTAbrBfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03130PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	542.324057	1082.63356	0.5204	0.00028223	-0.93554	-0.00050736	-0.41514	-0.00022514	542.3238468624346	103.75	0.73409	102.32	102.03	102.76	-1.4347	0.11318	-0.0021663	NaN	65.465	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42987	+		34430	31742	28329	28356							0.09554871682894372
LQLVAVKPTD	10	Unmodified	_LQLVAVKPTD_					0	0	0			REV__tr|A0A7D6VW89|A0A7D6VW89_9CLOTAbrBfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03130PE=4SV=1	REV__tr|A0A7D6VW89|A0A7D6VW89_9CLOTAbrBfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03130PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	542.324057	1082.63356	-1.0319	-0.00055965	2.648	0.0014361	1.616	0.00087642	542.3246302219906	104.38	1.0379	102.26	102.01	103.05	-2.1192	0.05993	0.0017205	NaN	65.465	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53967	+		34431	31742	28329	28356							0.09554871682894372
LQLVINIAR	9	Unmodified	_LQLVINIAR_					0	0	0			REV__POP7|p.A85V|1|0.16|ENSG00000172336|chr7:100707084-100707084|C/T|missense_variant	REV__POP7|p.A85V|1|0.16|ENSG00000172336|chr7:100707084-100707084|C/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	520.334716796875	2	520.334759	1038.65496	1.052	0.00054741	-0.0933	-4.8547E-05	0.95873	0.00049886	520.334413748936	111.15	1.7644	111.15	110.67	112.43	0					66	38	3	0	0	0	0.40667	1	12646	12646		51.335	0	1	1142100	+		34432	29311	28330	28357	37905	37905					0.13718301502262875
LQLVTPHLQ	9	Unmodified	_LQLVTPHLQ_					0	0	0			REV__ENST00000448393.6_1_1:158985703-158988049:+|nuORF	REV__ENST00000448393.6_1_1:158985703-158988049:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.8119506835938	2	524.811116	1047.60768	-1.503	-0.00078877	0.87379	0.00045858	-0.62917	-0.00033019	524.8114039952846	71.605	1.7531	68.149	67.44	69.193	-3.4563					76	35	3	0	0	0	0.3076	1	5476	5476		62.107	5.3864	1	421550	+		34433	25932	28331	28358	37906	37906					0.08578022231290561
LQMAEPLSI	9	Unmodified	_LQMAEPLSI_					0	0	0			REV__ENSG00000167721|ENST00000301364|TSR1	REV__ENSG00000167721|ENST00000301364|TSR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.806640625	2	501.270435	1000.52632	-0.60559	-0.00030356	4.2064	0.0021085	3.6008	0.001805	501.27264637886617	58.659	0.95261	55.267	54.852	55.805	-3.392					40	18	3	0	0	0	0.027462	1	3832	3832		34.173	0	1	66718	+		34434	21304	28332	28359	37907	37907					0.026075784770114296
LQMAEPLSI	9	Unmodified	_LQMAEPLSI_					0	0	0			REV__ENSG00000167721|ENST00000301364|TSR1	REV__ENSG00000167721|ENST00000301364|TSR1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	501.270435	1000.52632	-0.5368	-0.00026908	4.2051	0.0021079	3.6683	0.0018388	501.2726116007478	55.172	0.54038	55.172	54.98	55.52	0	-0.047214	-6.233E-07	NaN	34.173	21	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	514600	+		34435	21304	28332	28359							0.026075784770114296
LQMAIFLLVL	10	Unmodified	_LQMAIFLLVL_					0	0	0			REV__tr|A0A553SQX7|A0A553SQX7_NIACIDUF3817domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07460PE=4SV=1	REV__tr|A0A553SQX7|A0A553SQX7_NIACIDUF3817domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07460PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	580.8615112304688	2	580.859221	1159.70389	-0.46261	-0.00026871	3.8255	0.0022221	3.3629	0.0019534	580.8612138300758	109.64	1.0004	107.92	107.58	108.58	-1.7256					54	18	4	0	0	0	0.64063	1	10072	10072		37.159	1.9584	1	304000	+		34436	30670	28333	28360	37908	37908					0.13042453746993488
LQMIKIMD	8	Unmodified	_LQMIKIMD_					0	0	0		PIK3C2A|p.F1330Sfs*13|1|0.04|ENSG00000011405|chr11:17101297-17101298|-/TAACATTTTAGAAAGAG|frameshift_variant;ENSG00000011405|ENST00000691414|PIK3C2A;ENST00000531428.1_1_11:17113817-17167232:-|nuORF	PIK3C2A|p.F1330Sfs*13|1|0.04|ENSG00000011405|chr11:17101297-17101298|-/TAACATTTTAGAAAGAG|frameshift_variant	PIK3C2A|p.F1330Sfs*13|1|0.04|ENSG00000011405|chr11:17101297-17101298|-/TAACATTTTAGAAAGAG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.7911682128906	2	496.269381	990.524209	1.9	0.00094289	-1.1263	-0.00055893	0.77369	0.00038396	496.2687660654462	78.234	1.1945	78.234	77.884	79.079	0					40	28	2	0	0	0	0.028476	1	8040	8040		12.959	0	1	2049100			34437	964	28334	28361	37909	37909					0.028568264675413957
LQMIVYENI	9	Unmodified	_LQMIVYENI_					0	0	0		ENST00000472163.1_1_3:75263830-75263896:+|nuORF	ENST00000472163.1_1_3:75263830-75263896:+|nuORF	ENST00000472163.1_1_3:75263830-75263896:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.79931640625	2	561.796817	1121.57908	2.2896	0.0012863	0.86832	0.00048782	3.1579	0.0017741	561.7971902300202	84.649	2.1778	81.986	81.549	83.726	-2.6629					114	44	5	0	0	0	0.047062	1	7088	7088		120.62	0	1	1628700			34438	12392	28335	28362	37910	37910					0.023155365398224603
LQMKPLLE	8	Unmodified	_LQMKPLLE_					0	0	0			REV__ENST00000597853.5_1_19:49560809-49560899:-|nuORF	REV__ENST00000597853.5_1_19:49560809-49560899:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.28240966796875	2	486.283346	970.552139	-0.41484	-0.00020173	0.41372	0.00020118	-0.0011186	-5.4398E-07	486.28359457865264	99.113	1.2869	96.788	96.33	97.617	-2.3253					39	24	2	0	0	0	0.028476	1	8781	8781		42.396	0	1	130000	+		34439	28004	28336	28363	37911	37911					0.06568472719311558
LQMSNDRSL	9	Unmodified	_LQMSNDRSL_					0	0	0			REV__ENST00000409558.8_1_2:64141407-64147088:-|nuORF	REV__ENST00000409558.8_1_2:64141407-64147088:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.8011474609375	2	532.263673	1062.51279	1.8112	0.00096405	0.46572	0.00024789	2.2769	0.0012119	532.2627165114113	93.073	0.33667	93.073	92.926	93.263	0					15	7	3	0	0	0	0.027418	1	10078	10078		58.782	0.97068	1	183090	+		34440	25471	28337	28364	37912	37912					-0.015962793022254118
LQMSNDRSL	9	Unmodified	_LQMSNDRSL_					0	0	0			REV__ENST00000409558.8_1_2:64141407-64147088:-|nuORF	REV__ENST00000409558.8_1_2:64141407-64147088:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	532.263673	1062.51279	-0.15979	-8.5051E-05	2.2898	0.0012188	2.13	0.0011337	532.7671482727494	94.721	0.25266	92.826	92.662	92.914	-1.8956	-0.12359	0.00098302	NaN	58.782	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8959.8	+		34441	25471	28337	28364							-0.015962793022254118
LQNAAERLATE	11	Unmodified	_LQNAAERLATE_					0	0	0		ENSG00000187240|ENST00000375735|DYNC2H1;nc|ENSG00000187240|Q8NCM8-2|DYNC2H1;nc|ENSG00000187240|Q8NCM8-3|DYNC2H1;DYNC2H1|p.T3293Hfs*3|1|0.15|ENSG00000187240|chr11:103243746-103243746|A/-|frameshift_variant	ENSG00000187240|ENST00000375735|DYNC2H1	ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.8944091796875	3	405.882448	1214.62551	1.6417	0.00066633	-3.0407	-0.0012342	-1.399	-0.00056784	406.21584482676184	45.974	0.2242	45.974	45.8	46.024	0					7	4	2	0	0	0	0.025524	1	3210	3210		24.276	3.2437	1	38715			34442	8395	28338	28365	37913	37913					0.026786926954628143
LQNADPLKV	9	Unmodified	_LQNADPLKV_					0	0	0		nc|ENSG00000019582|P04233-5|CD74;nc|ENSG00000019582|P04233-2|CD74;nc|ENSG00000019582|P04233-4|CD74;ENSG00000019582|ENST00000009530|CD74	nc|ENSG00000019582|P04233-5|CD74	nc|ENSG00000019582|P04233-5|CD74	MULTI-MSMS	OvCa99_classI_Rep5	1	499.2890319824219	2	499.287474	996.560395	0.53416	0.0002667	0.23073	0.0001152	0.76489	0.0003819	499.28748009993507	74.387	0.576	74.387	74.02	74.596	0					48	14	5	0	0	0	0.020196	2	7372	7344;7372		146.79	40.268	1	18620000			34443	1019	28339	28366	37914;37915	37915					0.061977429602734446
LQNADPLKV	9	Unmodified	_LQNADPLKV_					0	0	0		nc|ENSG00000019582|P04233-5|CD74;nc|ENSG00000019582|P04233-2|CD74;nc|ENSG00000019582|P04233-4|CD74;ENSG00000019582|ENST00000009530|CD74	nc|ENSG00000019582|P04233-5|CD74	nc|ENSG00000019582|P04233-5|CD74	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.2878723144531	2	499.287474	996.560395	-0.65114	-0.0003251	0.51987	0.00025957	-0.13126	-6.5538E-05	499.28754939631364	77.183	1.3122	74.367	74.048	75.361	-2.8165					39	26	2	0	0	0	0.056671	2	6172	6159;6172		114.89	30.17	1	512600			34444	1019	28339	28366	37916;37917	37917					0.061977429602734446
LQNADPLKV	9	Unmodified	_LQNADPLKV_					0	0	0		nc|ENSG00000019582|P04233-5|CD74;nc|ENSG00000019582|P04233-2|CD74;nc|ENSG00000019582|P04233-4|CD74;ENSG00000019582|ENST00000009530|CD74	nc|ENSG00000019582|P04233-5|CD74	nc|ENSG00000019582|P04233-5|CD74	MULTI-MATCH	OvCa9_classI_Rep2	2		2	499.287474	996.560395	-0.86648	-0.00043262	1.5977	0.00079773	0.73126	0.00036511	499.2879431394718	76.242	1.6192	74.388	73.887	75.506	-1.854	0.0071978	0.0011751	NaN	146.79	53	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152570			34445	1019	28339	28366							0.061977429602734446
LQNIIYHI	8	Unmodified	_LQNIIYHI_					0	0	0		tr|A0A553STX8|A0A553STX8_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05930PE=4SV=1	tr|A0A553STX8|A0A553STX8_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05930PE=4SV=1	tr|A0A553STX8|A0A553STX8_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05930PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.2596435546875	2	507.292559	1012.57057	-0.90086	-0.000457	-3.7364	-0.0018954	-4.6372	-0.0023524	507.29051414446457	27.068	0.39965	27.068	26.841	27.241	0					11	7	2	0	0	0	0.028476	1	784	784		28.254	0	1	55910			34446	34548	28340	28367	37918	37918					0.06478350685495116
LQNKSFKFF	9	Unmodified	_LQNKSFKFF_					0	0	0			REV__L1MA1_dup882|chr3:174894625-174897831:+|1.387705056550523|0.3345806313734131|2.05|429.0|136|1|anti-sense	REV__L1MA1_dup882|chr3:174894625-174897831:+|1.387705056550523|0.3345806313734131|2.05|429.0|136|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.2931518554688	2	579.818941	1157.62333	1.2289	0.00071253	-3.8903	-0.0022557	-2.6614	-0.0015431	579.8166209447645	110.02	0.49506	110.02	109.81	110.31	0					21	10	3	0	0	0	0.027118	1	12486	12486		96.19	22.216	1	314480	+		34447	28375	28341	28368	37919	37919					0.050823087483195195
LQNNTILRL	9	Unmodified	_LQNNTILRL_					0	0	0		ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A;ENST00000369144.7_1_10:120819204-120820315:-|nuORF	ENSG00000107581|ENST00000369144|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	MULTI-MSMS	OvCa99_classI_Rep5	1	542.8300170898438	2	542.827298	1083.64004	1.6629	0.00090266	0.42504	0.00023072	2.0879	0.0011334	542.827394305547	93.694	0.45562	93.694	93.508	93.964	0					25	10	3	0	0	0	0.1149	1	10183	10183		93.143	8.2277	1	1349200			34448	2604	28342	28369	37920	37920					0.10156809634258934
LQNNTILRL	9	Unmodified	_LQNNTILRL_					0	0	0		ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A;ENST00000369144.7_1_10:120819204-120820315:-|nuORF	ENSG00000107581|ENST00000369144|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.827298	1083.64004	-0.92948	-0.00050455	0.73844	0.00040085	-0.19104	-0.0001037	542.8275919206468	94.64	0.88436	93.541	93.312	94.197	-1.0995	-0.08069	0.00011878	NaN	93.143	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78261			34449	2604	28342	28369							0.10156809634258934
LQNNTILRL	9	Unmodified	_LQNNTILRL_					0	0	0		ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A;ENST00000369144.7_1_10:120819204-120820315:-|nuORF	ENSG00000107581|ENST00000369144|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	542.827298	1083.64004	-0.43447	-0.00023584	0.37642	0.00020433	-0.058052	-3.1512E-05	542.8273237328217	95.486	0.84312	93.59	93.311	94.154	-1.8956	-0.031021	-0.00027425	NaN	93.143	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103490			34450	2604	28342	28369							0.10156809634258934
LQNNTILRL	9	Unmodified	_LQNNTILRL_					0	0	0		ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A;ENST00000369144.7_1_10:120819204-120820315:-|nuORF	ENSG00000107581|ENST00000369144|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	542.827298	1083.64004	-0.94228	-0.0005115	0.97468	0.00052908	0.032398	1.7587E-05	542.8274491520532	96.087	1.0676	93.661	93.254	94.322	-2.4256	0.039429	0.00037526	NaN	93.143	49	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110390			34451	2604	28342	28369							0.10156809634258934
LQNPISLPK	9	Unmodified	_LQNPISLPK_					0	0	0			REV__ENSG00000172482|ENST00000307503|AGXT	REV__ENSG00000172482|ENST00000307503|AGXT	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.3248596191406	2	505.305667	1008.59678	-0.073686	-3.7234E-05	2.7947	0.0014122	2.721	0.001375	505.3071221964154	105.62	0.88441	104.28	103.68	104.56	-1.3482					21	16	2	0	0	0	0.027441	1	7408	7408		49.442	5.3247	1	117250	+		34452	21704	28343	28370	37921	37921					0.09282619856981
LQNTKPTAK	9	Unmodified	_LQNTKPTAK_					0	0	0		ENST00000330943.8_1_16:50706657-50706903:-|nuORF	ENST00000330943.8_1_16:50706657-50706903:-|nuORF	ENST00000330943.8_1_16:50706657-50706903:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.3091125488281	2	500.792924	999.571294	-0.94805	-0.00047477	1.1026	0.00055219	0.15458	7.7414E-05	500.79309679513835	32.54	0.69144	29.83	29.679	30.371	-2.7097					21	11	3	0	0	0	0.027455	1	1150	1150		26.693	0	1	48847			34453	10442	28344	28371	37922	37922					0.07149145334562945
LQNWHGQKY	9	Unmodified	_LQNWHGQKY_					0	0	0			REV__ENSG00000181458|ENST00000323523|TMEM45A	REV__ENSG00000181458|ENST00000323523|TMEM45A	MULTI-MSMS	OvCa9_classI_Rep3	3	587.2948608398438	2	587.293622	1172.57269	-1.0296	-0.0006047	3.3509	0.001968	2.3212	0.0013632	587.295447025385	119.26	2.5013	118.23	117.93	120.43	-1.0271					129	49	5	0	0	0	0.56889	1	9074	9074		35.618	3.6634	1	734600	+		34454	22235	28345	28372	37923	37923					-0.006692205766512416
LQPALESGFF	10	Unmodified	_LQPALESGFF_					0	0	0		ENST00000464499.5_1_16:70512876-70513152:+|nuORF	ENST00000464499.5_1_16:70512876-70513152:+|nuORF	ENST00000464499.5_1_16:70512876-70513152:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.3136596679688	2	554.787307	1107.56006	0.17432	9.6711E-05	-3.6169	-0.0020066	-3.4426	-0.0019099	554.7852348014299	63.943	0.38813	60.468	60.298	60.686	-3.475					9	7	2	0	0	0	0.027145	1	4535	4535		24.519	5.1592	1	38927			34455	12254	28346	28373	37924	37924					0.010583232404542287
LQPDRLVQ	8	Unmodified	_LQPDRLVQ_					0	0	0			REV__ENST00000597086.1_19:21265051-21281007:+|nuORF	REV__ENST00000597086.1_19:21265051-21281007:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	483.8263854980469	2	484.779816	967.545079	-1.222	-0.0005924	1.058	0.00051291	-0.16397	-7.9489E-05	484.78020006427204	77.289	1.8764	74.925	74.565	76.441	-2.3643					66	36	4	0	0	0	0.028476	1	4045	4045		50.025	5.9077	1	344310	+		34456	27998	28347	28374	37925	37925					0.060008761631024754
LQPDRLVQ	8	Unmodified	_LQPDRLVQ_					0	0	0			REV__ENST00000597086.1_19:21265051-21281007:+|nuORF	REV__ENST00000597086.1_19:21265051-21281007:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	484.779816	967.545079	2.1181	0.0010268	3.7938	0.0018392	5.912	0.002866	484.7814962459869	74.865	0.65044	74.865	74.718	75.369	0	-0.029913	0.0024125	NaN	50.025	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210750	+		34457	27998	28347	28374							0.060008761631024754
LQPESTRAP	9	Unmodified	_LQPESTRAP_					0	0	0			REV__ENSG00000278615|ENST00000524958|C11orf98	REV__ENSG00000278615|ENST00000524958|C11orf98	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.7650146484375	2	499.766906	997.519259	-1.053	-0.00052626	-3.1163	-0.0015574	-4.1694	-0.0020837	499.76572667649543	127.6	4.5409	126.16	125.39	129.93	-1.4357					197	90	5	0	0	0	0.49652	1	12336	12336		42.864	2.8061	1	12586000	+		34458	23643	28348	28375	37926	37926					0.020399819208023473
LQPGRALALHA	11	Unmodified	_LQPGRALALHA_					0	0	0			REV__ENST00000263269.3_1_19:48946008-48947172:+|nuORF	REV__ENST00000263269.3_1_19:48946008-48947172:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	574.80078125	2	573.840739	1145.66693	3.1307	0.0017965	3.368	0.0019327	6.4987	0.0037292	573.8425480401097	133.44	0.63397	131.92	131.71	132.34	-1.5257					23	12	2	0	0	0	0.025496	1	12854	12854		40.778	3.6191	1	12423	+		34459	23997	28349	28376	37927	37927					0.09991918245441411
LQPGRVLLL	9	Unmodified	_LQPGRVLLL_					0	0	0			REV__ENST00000459850.5_1_9:139905636-139906175:-|nuORF	REV__ENST00000459850.5_1_9:139905636-139906175:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	504.83270263671875	2	504.831852	1007.64915	1.2967	0.00065459	0.65377	0.00033005	1.9504	0.00098464	504.83217827939797	111.6	0.91527	111.6	111.33	112.25	0					33	19	2	0	0	0	0.14739	1	12686	12686		85.359	8.5128	1	498210	+		34460	24637	28350	28377	37928	37928					0.14563202990609625
LQPGRVLLL	9	Unmodified	_LQPGRVLLL_					0	0	0			REV__ENST00000459850.5_1_9:139905636-139906175:-|nuORF	REV__ENST00000459850.5_1_9:139905636-139906175:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	504.831852	1007.64915	1.2967	0.00065459	0.65377	0.00033005	1.9504	0.00098464	504.83217827939797	111.6	0.91527	111.6	111.33	112.25	0	-0.26717	0.00077797	NaN	85.359	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	498210	+		34461	24637	28350	28377							0.14563202990609625
LQPGRVLLL	9	Unmodified	_LQPGRVLLL_					0	0	0			REV__ENST00000459850.5_1_9:139905636-139906175:-|nuORF	REV__ENST00000459850.5_1_9:139905636-139906175:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	504.831852	1007.64915	0.038409	1.939E-05	-0.38002	-0.00019184	-0.34161	-0.00017245	504.8316605951558	111.99	0.838	111.85	111.52	112.36	-0.13961	-0.0089854	-0.00026581	NaN	85.359	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35914	+		34462	24637	28350	28377							0.14563202990609625
LQPGRVLLL	9	Unmodified	_LQPGRVLLL_					0	0	0			REV__ENST00000459850.5_1_9:139905636-139906175:-|nuORF	REV__ENST00000459850.5_1_9:139905636-139906175:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	504.831852	1007.64915	0.79264	0.00040015	-1.2381	-0.00062501	-0.44542	-0.00022486	504.831198728041	113.06	1.2113	111.98	111.66	112.87	-1.0753	0.11814	-0.0011322	NaN	85.359	31	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46970	+		34463	24637	28350	28377							0.14563202990609625
LQPGRVLLL	9	Unmodified	_LQPGRVLLL_					0	0	0			REV__ENST00000459850.5_1_9:139905636-139906175:-|nuORF	REV__ENST00000459850.5_1_9:139905636-139906175:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	504.831852	1007.64915	0.047441	2.395E-05	-0.58929	-0.00029749	-0.54185	-0.00027354	504.83151452200303	113.47	0.58382	112.02	111.7	112.29	-1.4461	0.15802	-0.00047711	NaN	85.359	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49060	+		34464	24637	28350	28377							0.14563202990609625
LQPIENKN	8	Unmodified	_LQPIENKN_					0	0	0			REV__nc|ENSG00000109762|Q9H3E2|SNX25	REV__nc|ENSG00000109762|Q9H3E2|SNX25	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.26495361328125	2	478.263999	954.513445	0.1499	7.1694E-05	-0.93042	-0.00044498	-0.78051	-0.00037329	478.2635310226388	62.047	3.0424	58.589	57.417	60.459	-3.4577					136	62	4	0	0	0	0.61436	1	4335	4335		60.972	0	1	2869500	+		34465	17948	28351	28378	37929	37929					0.03436883409131042
LQPKEYFQL	9	Unmodified	_LQPKEYFQL_					0	0	0		nc|ENSG00000131831|Q9Y5P3-2|RAI2;ENSG00000131831|ENST00000451717|RAI2	nc|ENSG00000131831|Q9Y5P3-2|RAI2	nc|ENSG00000131831|Q9Y5P3-2|RAI2	MULTI-MSMS	OvCa99_classI_Rep5	1	583.318359375	2	583.316232	1164.61791	-0.21906	-0.00012778	2.3768	0.0013865	2.1578	0.0012587	583.3174438119785	101.62	0.979	101.62	101.36	102.34	0					66	22	5	0	0	0	0.2784	1	11314	11314		65.465	8.7443	1	6109300			34466	4092	28352	28379	37930	37930					0.042185851658587126
LQPKWVKKL	9	Unmodified	_LQPKWVKKL_					0	0	0			REV__ENST00000481453.5_1_16:418974-419244:-|nuORF	REV__ENST00000481453.5_1_16:418974-419244:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.3330078125	2	570.368601	1138.72265	0.24911	0.00014208	-0.89779	-0.00051207	-0.64868	-0.00036999	570.3677420409883	72.743	0.19398	72.743	72.61	72.804	0					5	4	2	0	0	0	0.027462	1	7084	7084		21.96	0	1	114560	+		34467	15935	28353	28380	37931	37931					0.1588375143307985
LQPLLKKM	8	Unmodified	_LQPLLKKM_					0	0	0			REV__ENST00000537905.5_1_11:71735188-71747007:-|nuORF	REV__ENST00000537905.5_1_11:71735188-71747007:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.2967529296875	2	485.809531	969.604509	-0.1634	-7.9379E-05	2.1557	0.0010473	1.9923	0.00096789	485.811382138314	67.082	0.64347	64.421	64.199	64.842	-2.661					16	12	2	0	0	0	0.028476	1	5226	5226		25.45	4.9683	1	23462	+		34468	27317	28354	28381	37932	37932					0.11849055852917445
LQPLPQLPQ	9	Unmodified	_LQPLPQLPQ_					0	0	0			REV__ENST00000205194.4_1_19:55998534-55998630:+|nuORF	REV__ENST00000205194.4_1_19:55998534-55998630:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.3246459960938	2	517.305667	1032.59678	0.9617	0.00049749	0.86629	0.00044813	1.828	0.00094563	517.3061955563168	105.09	0.67786	103.75	103.57	104.25	-1.3482					17	12	2	0	0	0	0.027418	1	7342	7342		58.782	0	1	23757	+		34469	23701	28355	28382	37933	37933					0.08178619856994374
LQPLRPAPE	9	Unmodified	_LQPLRPAPE_					0	0	0		ENSG00000197483|ENST00000598519|ZNF628	ENSG00000197483|ENST00000598519|ZNF628	ENSG00000197483|ENST00000598519|ZNF628	MULTI-SECPEP	OvCa9_classI_Rep3	3	510.845703125	2	510.795466	1019.57638	1.4065	0.00071846	0.49928	0.00025503	1.9058	0.00097349	510.7945905395882	124.29	0.51908	123.25	122.97	123.49	-1.0377					13	9	2	0	0	0	0.027462	1	9629	9629		35.618	0	1	9972.8			34470	8716	28356	28383	37934	37934					0.06737449197180467
LQPLTRPKV	9	Unmodified	_LQPLTRPKV_					0	0	0			REV__ENST00000577781.1_1_3:186501651-186501927:-|nuORF	REV__ENST00000577781.1_1_3:186501651-186501927:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.7567138671875	2	526.334759	1050.65496	-0.84152	-0.00044292	0.1234	6.4952E-05	-0.71812	-0.00037797	526.3347168531326	48.223	0.92192	45.115	44.787	45.709	-3.1077					41	17	3	0	0	0	0.027462	1	2645	2645		19.997	0	1	104250	+		34471	27796	28357	28384	37935	37935					0.13166301502246824
LQPPHQVPPQP	11	Unmodified	_LQPPHQVPPQP_					0	0	0		ZNF462|p.Q1930Rfs*3|1|0.04|ENSG00000148143|chr9:106929701-106929701|A/-|frameshift_variant;ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;ZNF462|p.K1242Rfs*39|1|0.04|ENSG00000148143|chr9:106927636-106927636|A/-|frameshift_variant	ZNF462|p.Q1930Rfs*3|1|0.04|ENSG00000148143|chr9:106929701-106929701|A/-|frameshift_variant	ZNF462|p.Q1930Rfs*3|1|0.04|ENSG00000148143|chr9:106929701-106929701|A/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	413.49029541015625	3	413.227779	1236.66151	0.36615	0.0001513	1.0329	0.00042683	1.3991	0.00057814	413.2280491103247	38.371	1.0368	38.371	38.114	39.151	0					42	22	4	0	0	0	0.025908	1	2174	2174		21.78	5.8598	1	159320			34472	5386	28358	28385	37936	37936					0.05264194662981936
LQPQPRGVVR	10	Unmodified	_LQPQPRGVVR_					0	0	0			REV__ENST00000462189.1_1_2:74688404-74690534:-|nuORF	REV__ENST00000462189.1_1_2:74688404-74690534:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	575.3452758789062	2	575.346189	1148.67783	-4.8723	-0.0028032	3.718	0.0021391	-1.1543	-0.00066411	575.3482857575835	154.87	1.1278	154.64	154.34	155.47	-0.22696					59	30	3	0	0	0	0.82648	1	15776	15776		15.642	1.5047	1	84487	+		34473	18231	28359	28386	37937	37937					0.10943320619730912
LQPRIKLKLFG	11	Unmodified	_LQPRIKLKLFG_					0	0	0		nc|ENSG00000196730|P53355-2|DAPK1;nc|ENSG00000196730|P53355-4|DAPK1;ENSG00000196730|ENST00000408954|DAPK1;nc|ENSG00000196730|P53355-3|DAPK1	nc|ENSG00000196730|P53355-2|DAPK1	nc|ENSG00000196730|P53355-2|DAPK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	438.2477111816406	3	438.286969	1311.83908	-0.93981	-0.00041191	-0.42526	-0.00018638	-1.3651	-0.00059829	438.2871668563522	44.071	0.29522	41.063	40.842	41.137	-3.0074					9	5	2	0	0	0	0.026174	1	2161	2161		12.433	5.4137	1	12984			34474	8646	28360	28387	37938	37938					0.19563069932951294
LQPTLVAPP	9	Unmodified	_LQPTLVAPP_					0	0	0			REV__ENST00000583818.1_1_17:73512940-73517507:+|nuORF	REV__ENST00000583818.1_1_17:73512940-73517507:+|nuORF	MSMS	OvCa99_classI_Rep5	1	468.2814636230469	2	468.28166	934.548768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.05	1	142.05	141.55	142.55	0								0	0	0	0.15766	1	16596	16596		63.306	0	1		+		34475	27838	28361	28388	37939	37939					0.07887545936932838
LQPVPGGH	8	Unmodified	_LQPVPGGH_					0	0	0			REV__ENST00000395925.7_1_7:42262820-42276591:-|nuORF	REV__ENST00000395925.7_1_7:42262820-42276591:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	403.235595703125	2	402.72177	803.428987	0.26797	0.00010792	3.6837	0.0014835	3.9516	0.0015914	402.7233061948966	43.598	1.0296	43.598	43.185	44.215	0					30	23	2	0	0	0	0.028476	1	2906	2906		15.636	0.97212	1	64906	+		34476	25323	28362	28389	37940	37940					0.01940977383048903
LQPVPGGH	8	Unmodified	_LQPVPGGH_					0	0	0			REV__ENST00000395925.7_1_7:42262820-42276591:-|nuORF	REV__ENST00000395925.7_1_7:42262820-42276591:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	402.72177	803.428987	1.5279	0.00061534	2.0037	0.00080693	3.5316	0.0014223	402.7225464645708	46.754	0.61549	43.681	43.45	44.065	-3.0724	0.041771	-0.00071321	NaN	15.636	13	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17809	+		34477	25323	28362	28389							0.01940977383048903
LQPWLELDYHL	11	Unmodified	_LQPWLELDYHL_					0	0	0			REV__ENSG00000172901|ENST00000357872|LVRN	REV__ENSG00000172901|ENST00000357872|LVRN	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.58551025390625	3	476.25036	1425.72925	0.24218	0.00011534	3.3354	0.0015885	3.5776	0.0017038	476.2521272370981	21.206	0.87699	19.867	19.697	20.574	-1.3386					38	17	3	0	0	0	0.72477	1	160	160		18.531	1.3643	1	71583	+		34478	21735	28363	28390	37941	37941					0.03341599803138706
LQPYLGRGLV	10	Unmodified	_LQPYLGRGLV_					0	0	0			REV__ENSG00000134815|ENST00000328771|DHX34	REV__ENSG00000134815|ENST00000328771|DHX34	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.296142578125	2	558.332216	1114.64988	2.9191	0.0016298	-1.0579	-0.00059068	1.8611	0.0010391	558.3314446403455	107.58	0.79833	107.58	107.31	108.11	0					53	18	4	0	0	0	0.026915	1	12198	12198		35.618	16.258	1	4006300	+		34479	19235	28364	28391	37942	37942					0.0971399763966474
LQQAIRRLDE	10	Unmodified	_LQQAIRRLDE_					0	0	0			REV__nc|ENSG00000196730|P53355-4|DAPK1	REV__nc|ENSG00000196730|P53355-4|DAPK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.57073974609375	3	414.570204	1240.68878	0.04639	1.9232E-05	0.34656	0.00014367	0.39295	0.0001629	414.5702589986125	20.778	1.7206	19.439	18.803	20.523	-1.3386					74	34	4	0	0	0	0.65849	1	93	93		26.75	9.583	1	188380	+		34480	22860	28365	28392	37943	37943					0.07806678203382944
LQQCEGEKSQL	11	Carbamidomethyl (C)	_LQQC(Carbamidomethyl (C))EGEKSQL_	LQQC(1)EGEKSQL		LQQC(59)EGEKSQL		0	1	0			REV__ENSG00000163820|ENST00000296137|FYCO1	REV__ENSG00000163820|ENST00000296137|FYCO1	MULTI-MSMS	OvCa99_classI_Rep5	1	440.546142578125	3	440.546848	1318.61871	0.77961	0.00034345	-3.1875	-0.0014042	-2.4079	-0.0010608	440.54556372328125	48.178	1.1347	48.178	47.941	49.075	0					68	25	5	0	0	0	0.43443	1	3506	3506		58.63	10.028	1	5183800	+		34481	20897	28366	28393	37944	37944	231				-0.027849882474129117
LQQEAHAH	8	Unmodified	_LQQEAHAH_					0	0	0			REV__ENST00000216160.10_1_22:39822838-39826082:+|nuORF	REV__ENST00000216160.10_1_22:39822838-39826082:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.266357421875	2	467.230491	932.446428	-0.32225	-0.00015056	0.50219	0.00023464	0.17994	8.4075E-05	467.23092636205024	29.461	0.14917	29.461	29.387	29.536	0					4	2	2	0	0	0	0.028476	1	1054	1054		19.36	0	1	7562.7	+		34482	23718	28367	28394	37945	37945					-0.022497270819712867
LQQHDGVLVF	10	Unmodified	_LQQHDGVLVF_					0	0	0			REV__nc|ENSG00000138346|P51530-4|DNA2	REV__nc|ENSG00000138346|P51530-4|DNA2	MULTI-MSMS	OvCa9_classI_Rep2	2	578.3093872070312	2	578.31148	1154.60841	-3.4092	-0.0019716	1.3378	0.00077367	-2.0714	-0.0011979	578.3120607814013	148.81	1.2534	148.59	148.22	149.47	-0.22697					59	24	4	0	0	0	0.7759	1	15066	15066		21.96	0	1	94207	+		34483	19530	28368	28395	37946	37946					0.03728816880334307
LQQILAVK	8	Unmodified	_LQQILAVK_					0	0	0			REV__nc|ENSG00000198022|A6NJ88|SAGE2P	REV__nc|ENSG00000198022|A6NJ88|SAGE2P	MULTI-SECPEP	OvCa9_classI_Rep2	2	456.7796325683594	2	456.797478	911.580402	1.3183	0.0006022	-2.8063	-0.0012819	-1.4879	-0.00067969	456.7961928757839	79.644	0.40926	77.949	77.714	78.124	-1.6951					9	7	2	0	0	0	0.028476	1	6705	6705		24.203	0	1	10946	+		34484	29088	28369	28396	37947	37947					0.12107538690884212
LQQINVKFV	9	Unmodified	_LQQINVKFV_					0	0	0		tr|A0A553SSN3|A0A553SSN3_NIACIProbablemolybdenumcofactorguanylyltransferaseOS=NialliacirculansOX=1397GN=mobAPE=3SV=1	tr|A0A553SSN3|A0A553SSN3_NIACIProbablemolybdenumcofactorguanylyltransferaseOS=NialliacirculansOX=1397GN=mobAPE=3SV=1	tr|A0A553SSN3|A0A553SSN3_NIACIProbablemolybdenumcofactorguanylyltransferaseOS=NialliacirculansOX=1397GN=mobAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	544.8245849609375	2	544.826766	1087.63898	-5.7876	-0.0031532	1.5349	0.00083624	-4.2527	-0.002317	544.8275981477423	155.03	0.91966	153.96	153.65	154.57	-1.073					57	22	4	0	0	0	0.67509	1	13317	13317		23.042	3.0457	1	91973			34485	34393	28370	28397	37948	37948					0.09866595265361866
LQQKNVEV	8	Unmodified	_LQQKNVEV_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000561171.5_1_15:79170562-79187198:+|nuORF;MORF4L1-PSMA4|1|fusion;MORF4L1-PSMA4|2|fusion;ENST00000558522.5_1_15:79165359-79183469:+|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENST00000558522.5_1_15:79165359-79183469:+|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.74658203125	2	479.271824	956.529095	2.5238	0.0012096	0.783	0.00037527	3.3068	0.0015848	479.2717539441399	88.823	0.63824	88.823	88.637	89.275	0					20	15	2	0	0	0	0.028476	1	9440	9440		25.45	0	1	272670			34486	8283;13699	28371	28398	37949	37949					0.049091699261907706
LQQKNVEV	8	Unmodified	_LQQKNVEV_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000561171.5_1_15:79170562-79187198:+|nuORF;MORF4L1-PSMA4|1|fusion;MORF4L1-PSMA4|2|fusion;ENST00000558522.5_1_15:79165359-79183469:+|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENST00000558522.5_1_15:79165359-79183469:+|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	479.271824	956.529095	1.5765	0.00075556	-1.5352	-0.00073579	0.041254	1.9772E-05	479.27092325207707	89.88	0.84166	88.577	88.334	89.176	-1.302	-0.072451	-0.001074	NaN	18.324	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20670			34487	8283;13699	28371	28398							0.049091699261907706
LQQKNVEV	8	Unmodified	_LQQKNVEV_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000561171.5_1_15:79170562-79187198:+|nuORF;MORF4L1-PSMA4|1|fusion;MORF4L1-PSMA4|2|fusion;ENST00000558522.5_1_15:79165359-79183469:+|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENST00000558522.5_1_15:79165359-79183469:+|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	479.271824	956.529095	-0.23393	-0.00011212	-0.73773	-0.00035357	-0.97166	-0.00046569	479.2714877298589	90.69	0.61273	88.609	88.31	88.923	-2.0805	-0.040608	-0.00030952	NaN	18.324	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26848			34488	8283;13699	28371	28398							0.049091699261907706
LQQKNVEV	8	Unmodified	_LQQKNVEV_					0	0	0		nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENSG00000185787|ENST00000426013|MORF4L1;nc|ENSG00000185787|Q9UBU8|MORF4L1;ENST00000561171.5_1_15:79170562-79187198:+|nuORF;MORF4L1-PSMA4|1|fusion;MORF4L1-PSMA4|2|fusion;ENST00000558522.5_1_15:79165359-79183469:+|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1;ENST00000558522.5_1_15:79165359-79183469:+|nuORF	nc|ENSG00000185787|Q9UBU8-3|MORF4L1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	479.271824	956.529095	-0.15951	-7.6449E-05	0.7574	0.000363	0.59789	0.00028655	479.2722423746221	91.133	0.36234	88.59	88.398	88.76	-2.5425	-0.059911	0.0011236	NaN	18.324	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27722			34489	8283;13699	28371	28398							0.049091699261907706
LQQKSVLTDT	10	Unmodified	_LQQKSVLTDT_					0	0	0			REV__nc|ENSG00000126777|Q86UP2-2|KTN1	REV__nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.8280639648438	2	566.814053	1131.61355	-0.2048	-0.00011608	-0.2514	-0.00014249	-0.45619	-0.00025858	566.8138952074257	38.859	0.31122	38.859	38.661	38.972	0					8	6	2	0	0	0	0.026968	1	2218	2218		36.447	0	1	101180	+		34490	18795	28372	28399	37950	37950					0.05301075952274914
LQQLGASL	8	Unmodified	_LQQLGASL_					0	0	0			REV__tr|A0A7D6VND6|A0A7D6VND6_9CLOTFMN-bindingglutamatesynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17415PE=3SV=1	REV__tr|A0A7D6VND6|A0A7D6VND6_9CLOTFMN-bindingglutamatesynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17415PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.5586853027344	2	415.242535	828.470518	0.66091	0.00027444	-2.9835	-0.0012389	-2.3226	-0.00096442	415.2431807011	46.846	0.57611	46.846	46.545	47.121	0					19	12	3	0	0	0	0.028476	1	3352	3352		35.201	0	1	156820	+		34491	31174	28373	28400	37951	37951					0.04942113351694388
LQQLLPQTR	9	Unmodified	_LQQLLPQTR_					0	0	0			REV__L1PB1_dup435|chr1:148902763-148905178:-|1.8547645190966555|0.2878265206874703|2.69|429.0|8|1|sense	REV__L1PB1_dup435|chr1:148902763-148905178:-|1.8547645190966555|0.2878265206874703|2.69|429.0|8|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.84716796875	2	548.827298	1095.64004	-0.024723	-1.3569E-05	-2.3146	-0.0012703	-2.3393	-0.0012839	548.8255405612096	70.9	0.38901	70.9	70.565	70.954	0					15	9	2	0	0	0	0.027462	1	6796	6796		44.117	0	1	123840	+		34492	28590	28374	28401	37952	37952					0.09604809634265621
LQQLRKKLREI	11	Unmodified	_LQQLRKKLREI_					0	0	0			REV__ENSG00000118407|ENST00000237172|FILIP1	REV__ENSG00000118407|ENST00000237172|FILIP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.6084289550781	3	475.640182	1423.89872	0.21034	0.00010005	-1.9116	-0.00090925	-1.7013	-0.0008092	475.6389642750145	80.596	0.19806	78.9	78.769	78.967	-1.6951					5	3	2	0	0	0	0.025864	1	6807	6807		28.577	6.7963	1	10492	+		34493	18394	28375	28402	37953	37953					0.20372340876338058
LQQLSLILTKA	11	Unmodified	_LQQLSLILTKA_					0	0	0			REV__nc|ENSG00000101972|Q8N3U4|STAG2	REV__nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MSMS	OvCa9_classI_Rep2	2	614.384765625	2	614.387188	1226.75982	-5.0786	-0.0031202	1.5861	0.00097447	-3.4925	-0.0021457	614.387997754013	157.04	0.77016	156.81	156.57	157.34	-0.22696					47	20	3	0	0	0	0.71498	1	15982	15982		24.519	0	1	63796	+		34494	17530	28376	28403	37954	37954					0.15551378188160925
LQQLVKHEPQ	10	Unmodified	_LQQLVKHEPQ_					0	0	0			REV__ENSG00000104518|ENST00000262580|GSDMD	REV__ENSG00000104518|ENST00000262580|GSDMD	MULTI-MSMS	OvCa99_classI_Rep5	1	610.3447265625	2	610.343312	1218.67207	-0.27938	-0.00017052	-0.0011769	-7.1828E-07	-0.28056	-0.00017124	610.3432542507906	66.374	1.3524	66.374	66.096	67.448	0					73	33	5	0	0	0	0.43433	1	6137	6137		42.396	0	1	11834000	+		34495	17667	28377	28404	37955	37955					0.07148177317412774
LQQLVQHY	8	Unmodified	_LQQLVQHY_					0	0	0		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.7974243164062	2	514.779816	1027.54508	-0.78243	-0.00040278	1.0143	0.00052214	0.23186	0.00011936	514.779839644196	53.684	0.42656	53.684	53.347	53.774	0					15	9	2	0	0	0	0.028476	1	4288	4288		33.516	10.479	1	375880			34496	949	28378	28405	37956	37956					0.03240876163090434
LQQLVQHY	8	Unmodified	_LQQLVQHY_					0	0	0		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.779816	1027.54508	-0.71717	-0.00036918	-0.85696	-0.00044115	-1.5741	-0.00081033	514.7798397455196	56.285	0.69413	53.481	53.275	53.969	-2.804	-0.028176	0.0018858	NaN	12.207	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14705			34497	949	28378	28405							0.03240876163090434
LQQLVQHY	8	Unmodified	_LQQLVQHY_					0	0	0		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	514.779816	1027.54508	0.0034105	1.7556E-06	-3.5943	-0.0018503	-3.5909	-0.0018485	514.777881832758	56.658	0.81255	53.364	53.07	53.883	-3.2944	-0.1461	-0.00093239	NaN	12.207	29	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93969			34498	949	28378	28405							0.03240876163090434
LQQNRLHKQFL	11	Unmodified	_LQQNRLHKQFL_					0	0	0		ENSG00000178404|ENST00000322630|CEP295NL	ENSG00000178404|ENST00000322630|CEP295NL	ENSG00000178404|ENST00000322630|CEP295NL	MULTI-MSMS	OvCa9_classI_Rep3	3	475.6095886230469	3	475.608882	1423.80482	0.37352	0.00017765	-1.8586	-0.00088397	-1.4851	-0.00070633	475.6080683301692	81.355	3.0767	79.032	78.697	81.774	-2.3226					187	62	5	0	0	0	0.68059	1	4507	4507		36.318	2.2311	1	5738700			34499	7754	28379	28406	37957	37957					0.10986621774054584
LQQNTSLEI	9	Unmodified	_LQQNTSLEI_					0	0	0		NOD1|p.Q907Rfs*20|1|0.04|ENSG00000106100|chr7:30429444-30429444|G/-|frameshift_variant;nc|ENSG00000106100|Q9Y239-3|NOD1;ENSG00000106100|ENST00000222823|NOD1;ENST00000434755.5_1_7:30468991-30485839:-|nuORF	NOD1|p.Q907Rfs*20|1|0.04|ENSG00000106100|chr7:30429444-30429444|G/-|frameshift_variant	NOD1|p.Q907Rfs*20|1|0.04|ENSG00000106100|chr7:30429444-30429444|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.2796020507812	2	523.279846	1044.54514	0.20858	0.00010915	-1.7992	-0.00094147	-1.5906	-0.00083232	523.2795744368268	110.93	1.3679	109.33	108.86	110.23	-1.6011					67	25	4	0	0	0	0.3076	1	10235	10235		62.107	7.3311	1	123370			34500	2528	28380	28407	37958	37958					0.02464831372435583
LQQPRLSLQ	9	Unmodified	_LQQPRLSLQ_					0	0	0		ENSG00000109171|ENST00000264313|SLAIN2;ENST00000505131.1_1_4:48384636-48389420:+|nuORF	ENSG00000109171|ENST00000264313|SLAIN2	ENSG00000109171|ENST00000264313|SLAIN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.78125	2	541.819473	1081.62439	1.4986	0.00081199	1.9854	0.0010757	3.484	0.0018877	541.8203827013363	101.3	0.37696	101.3	101.15	101.53	0					11	8	2	0	0	0	0.027462	1	11266	11266		42.396	11.892	1	245400			34501	2703	28381	28408	37959	37959					0.08684523117221943
LQQPVMPF	8	Unmodified	_LQQPVMPF_					0	0	0			REV__ENSG00000055609|ENST00000262189|KMT2C	REV__ENSG00000055609|ENST00000262189|KMT2C	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2388000488281	2	480.254588	958.494624	-0.59488	-0.00028569	3.5119	0.0016866	2.917	0.0014009	480.2564813568595	52.016	0.42528	52.016	51.788	52.214	0					12	9	2	0	0	0	0.028476	1	4039	4039		19.36	1.0356	1	155090	+		34502	16712	28382	28409	37960	37960					0.013716305137336349
LQQQALPD	8	Unmodified	_LQQQALPD_					0	0	0		nc|ENSG00000140481|Q8N5R6-4|CCDC33;ENSG00000140481|ENST00000398814|CCDC33;nc|ENSG00000140481|Q8N5R6|CCDC33	nc|ENSG00000140481|Q8N5R6-4|CCDC33	nc|ENSG00000140481|Q8N5R6-4|CCDC33	MULTI-MSMS	OvCa99_classI_Rep5	1	456.74517822265625	2	456.742899	911.471246	0.83476	0.00038127	1.2097	0.00055251	2.0444	0.00093378	456.7432871851498	105.62	0.69778	105.62	105.4	106.1	0					32	15	3	0	0	0	0.36941	1	11887	11887		94.006	20.032	1	1442100			34503	4848	28383	28410	37961	37961					0.011969080007474986
LQQQALPD	8	Unmodified	_LQQQALPD_					0	0	0		nc|ENSG00000140481|Q8N5R6-4|CCDC33;ENSG00000140481|ENST00000398814|CCDC33;nc|ENSG00000140481|Q8N5R6|CCDC33	nc|ENSG00000140481|Q8N5R6-4|CCDC33	nc|ENSG00000140481|Q8N5R6-4|CCDC33	MULTI-MATCH	OvCa9_classI_Rep3	3		2	456.742899	911.471246	0.49156	0.00022451	0.11177	5.1051E-05	0.60333	0.00027557	456.74262071572537	106.6	0.31265	105.33	105.16	105.48	-1.267	-0.14801	-0.00063089	NaN	94.006	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8274.1			34504	4848	28383	28410							0.011969080007474986
LQQQGDNI	8	Unmodified	_LQQQGDNI_					0	0	0			REV__tr|A0A553SJC6|A0A553SJC6_NIACIMMPLfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_16535PE=3SV=1	REV__tr|A0A553SJC6|A0A553SJC6_NIACIMMPLfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_16535PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.7780456542969	2	458.230156	914.445759	0.40321	0.00018476	-0.22066	-0.00010111	0.18255	8.3649E-05	458.230060271305	72.704	0.82475	72.704	72.249	73.074	0					28	20	2	0	0	0	0.028476	1	7148	7148		18.324	0	1	650280	+		34505	29994	28384	28411	37962	37962					-0.0148856652166387
LQQQKKKL	8	Unmodified	_LQQQKKKL_					0	0	0			REV__ENSG00000196498|ENST00000405201|NCOR2;REV__nc|ENSG00000141027|O75376-2|NCOR1	REV__ENSG00000196498|ENST00000405201|NCOR2	MULTI-MSMS	OvCa99_classI_Rep5	1	507.3281555175781	2	507.326934	1012.63931	-0.10917	-5.5387E-05	-0.81293	-0.00041242	-0.9221	-0.00046781	507.3265352357464	65.169	2.8481	65.169	64.834	67.683	0					146	71	5	0	0	0	0.64026	1	6068	6068		55.504	0	1	40796000	+		34506	22837;19717	28385	28412	37963	37963					0.1335001498522388
LQQQLKNEL	9	Unmodified	_LQQQLKNEL_					0	0	0			REV__ENSG00000102189|ENST00000322349|EEA1	REV__ENSG00000102189|ENST00000322349|EEA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.3327026367188	2	557.316763	1112.61897	2.8098	0.001566	-1.1079	-0.00061746	1.7019	0.00094849	557.3160613915737	101.05	0.41928	101.05	100.86	101.27	0					16	9	2	0	0	0	0.027353	1	11234	11234		82.241	7.1972	1	341910	+		34507	17542	28386	28413	37964	37964					0.06716799534751772
LQQQLKNEL	9	Unmodified	_LQQQLKNEL_					0	0	0			REV__ENSG00000102189|ENST00000322349|EEA1	REV__ENSG00000102189|ENST00000322349|EEA1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	557.316763	1112.61897	-1.026	-0.00057179	3.0678	0.0017098	2.0419	0.001138	557.8202165783345	102.26	0.31091	100.74	100.58	100.89	-1.5211	-0.15765	0.0039791	NaN	82.241	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6552.8	+		34508	17542	28386	28413							0.06716799534751772
LQQQRRREEDR	11	Unmodified	_LQQQRRREEDR_					0	0	0			REV__nc|ENSG00000130396|P55196-6|AFDN	REV__nc|ENSG00000130396|P55196-6|AFDN	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.80877685546875	3	505.269588	1512.78693	-0.43404	-0.00021931	4.211	0.0021277	3.777	0.0019084	505.271631350393	72.768	0.79178	70.281	70.034	70.826	-2.4873					40	15	3	0	0	0	0.026068	1	3530	3530		21.78	16.082	1	136680	+		34509	28847	28387	28414	37965	37965					0.05105254781278745
LQQQRRREEDR	11	Unmodified	_LQQQRRREEDR_					0	0	0			REV__nc|ENSG00000130396|P55196-6|AFDN	REV__nc|ENSG00000130396|P55196-6|AFDN	MULTI-MATCH	OvCa9_classI_Rep2	2		3	505.269588	1512.78693	-0.23655	-0.00011952	4.5236	0.0022856	4.287	0.0021661	505.27172276357874	72.429	0.78484	69.922	69.642	70.427	-2.5071	-0.22726	0.00017186	NaN	21.78	39	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77627	+		34510	28847	28387	28414							0.05105254781278745
LQQQRRREEDR	11	Unmodified	_LQQQRRREEDR_					0	0	0			REV__nc|ENSG00000130396|P55196-6|AFDN	REV__nc|ENSG00000130396|P55196-6|AFDN	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	505.269588	1512.78693	-1.1978	-0.0006052	4.8114	0.0024311	3.6136	0.0018259	505.27202139735	73.641	0.62305	70.245	70.027	70.65	-3.3961	0.095478	0.00060816	NaN	21.78	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118380	+		34511	28847	28387	28414							0.05105254781278745
LQQQVKTN	8	Unmodified	_LQQQVKTN_					0	0	0		ENSG00000143756|ENST00000366862|FBXO28	ENSG00000143756|ENST00000366862|FBXO28	ENSG00000143756|ENST00000366862|FBXO28	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.7831115722656	2	479.769448	957.524344	-0.24167	-0.00011594	1.0011	0.00048028	0.7594	0.00036434	479.7700269487025	66.482	0.41166	66.482	66.25	66.661	0					15	9	3	0	0	0	0.028476	1	6174	6174		30.504	0	1	771040			34512	5091	28388	28415	37966	37966					0.043882857834205424
LQQRGRTL	8	Unmodified	_LQQRGRTL_					0	0	0			REV__ENSG00000123064|ENST00000306014|DDX54	REV__ENSG00000123064|ENST00000306014|DDX54	MULTI-MSMS	OvCa9_classI_Rep2	2	486.2894287109375	2	486.290882	970.567212	-0.051281	-2.4938E-05	-3.8171	-0.0018562	-3.8684	-0.0018811	486.28890972170547	95.271	2.7144	94.243	93.482	96.196	-1.0281					110	54	3	0	0	0	0.67745	1	8610	8610		47.916	1.9434	1	2640800	+		34513	18620	28389	28416	37967	37967					0.08075100631526766
LQQRILNG	8	Unmodified	_LQQRILNG_					0	0	0		ENSG00000143951|ENST00000272321|WDPCP;nc|ENSG00000143951|O95876-3|WDPCP	ENSG00000143951|ENST00000272321|WDPCP	ENSG00000143951|ENST00000272321|WDPCP	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.309326171875	2	471.279983	940.545414	-0.30865	-0.00014546	0.65411	0.00030827	0.34545	0.00016281	471.2802064084373	24.311	0.14845	24.311	24.237	24.386	0					4	2	2	0	0	0	0.028476	1	430	430		25.45	0	1	21663			34514	5111	28390	28417	37968	37968					0.0727629588294576
LQQRYTLPN	9	Unmodified	_LQQRYTLPN_					0	0	0		nc|ENSG00000102763|A3KMH1-2|VWA8;nc|ENSG00000102763|A3KMH1-3|VWA8;ENSG00000102763|ENST00000379310|VWA8	nc|ENSG00000102763|A3KMH1-2|VWA8	nc|ENSG00000102763|A3KMH1-2|VWA8	MULTI-MSMS	OvCa9_classI_Rep2	2	566.8092651367188	2	566.809105	1131.60366	-1.2191	-0.00069098	1.2365	0.00070083	0.01738	9.8509E-06	566.8096697785414	54.761	1.297	51.947	51.424	52.721	-2.8139					80	25	4	0	0	0	0.51865	1	3767	3767		40.778	2.9666	1	651890			34515	2252	28391	28418	37969	37969					0.04311932737573443
LQQSDNIAAQL	11	Unmodified	_LQQSDNIAAQL_					0	0	0			REV__ENSG00000112379|ENST00000251691|ARFGEF3	REV__ENSG00000112379|ENST00000251691|ARFGEF3	MULTI-MSMS	OvCa99_classI_Rep5	1	400.8794250488281	3	400.878815	1199.61462	1.0522	0.00042182	-2.3585	-0.00094548	-1.3063	-0.00052366	400.877677608473	54.165	1.3418	54.165	53.891	55.233	0					64	31	3	0	0	0	0.34475	1	4358	4358		65.157	0.94998	1	845680	+		34516	18098	28392	28419	37970	37970					0.02279290321166627
LQQVINARNAL	11	Unmodified	_LQQVINARNAL_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-SECPEP	OvCa9_classI_Rep3	3	413.58746337890625	3	413.910449	1238.70952	1.6387	0.00067826	-1.3447	-0.00055657	0.29401	0.00012169	413.91008540606185	68.038	0.3989	65.15	64.94	65.338	-2.8873					12	7	2	0	0	0	0.026113	1	2942	2942		9.2118	2.8909	1	8288.5			34517	6778	28393	28420	37971	37971					0.09971268583035453
LQQVKQKL	8	Unmodified	_LQQVKQKL_					0	0	0		ENSG00000144821|ENST00000693548|MYH15;ENST00000478998.5_1_3:108124174-108178278:-|nuORF	ENSG00000144821|ENST00000693548|MYH15	ENSG00000144821|ENST00000693548|MYH15	MULTI-SECPEP	OvCa9_classI_Rep3	3	492.79522705078125	2	492.813659	983.612765	-0.71699	-0.00035334	0.72446	0.00035702	0.0074676	3.6801E-06	492.813853415471	74.807	1.1852	72.397	72.142	73.327	-2.4106					30	23	2	0	0	0	0.028476	1	3711	3711		47.916	0	1	29902			34518	5183	28394	28421	37972	37972					0.12030326093884014
LQQWIQKL	8	Unmodified	_LQQWIQKL_					0	0	0		ENSG00000184564|ENST00000647374|SLITRK6;SLITRK6|p.L747Pfs*49|1|0.08|ENSG00000184564|chr13:85794270-85794271|-/TATACATATAATATATGGAAGGGCATAAAGG|frameshift_variant	ENSG00000184564|ENST00000647374|SLITRK6	ENSG00000184564|ENST00000647374|SLITRK6	MULTI-MSMS	OvCa9_classI_Rep2	2	528.8112182617188	2	528.813659	1055.61277	-0.062872	-3.3248E-05	-4.3297	-0.0022896	-4.3926	-0.0023229	528.8113288616643	70.971	2.596	68.4	67.663	70.259	-2.5707					112	49	4	0	0	0	0.62934	1	5719	5719		57.811	2.3071	1	775680			34519	8170	28395	28422	37973	37973					0.08718326093890028
LQQYFILLI	9	Unmodified	_LQQYFILLI_					0	0	0		ENST00000567011.1_1_16:57179810-57181567:+|nuORF;ENST00000514439.1_1_3:131254041-131261643:-|nuORF	ENST00000567011.1_1_16:57179810-57181567:+|nuORF	ENST00000567011.1_1_16:57179810-57181567:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.7671508789062	2	575.847167	1149.67978	1.2442	0.00071647	0.44314	0.00025518	1.6873	0.00097165	575.846569397002	149.13	1.1745	149.13	148.47	149.65	0					38	23	3	0	0	0	0.027462	1	17409	17409		25.45	0	1	112990			34520	13856	28396	28423	37974	37974					0.11092936585009738
LQRAGPLAEQ	10	Unmodified	_LQRAGPLAEQ_					0	0	0		ENST00000511162.1_1_5:70196523-70197640:+|nuORF;ENST00000317633.13_2_5:70196496-70197687:+|nuORF	ENST00000511162.1_1_5:70196523-70197640:+|nuORF	ENST00000511162.1_1_5:70196523-70197640:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.78125	2	541.80128	1081.58801	1.2927	0.00070039	1.0235	0.00055453	2.3162	0.0012549	541.8015096756023	101.3	0.50108	101.3	101.15	101.65	0					15	11	2	0	0	0	0.026681	1	11266	11266		52.937	15.778	1	602910			34521	10357	28397	28424	37975	37975					0.05047646220509705
LQRDPDIYHHL	11	Unmodified	_LQRDPDIYHHL_					0	0	0		nc|ENSG00000168405|Q9Y471|CMAHP;nc|ENSG00000168405|Q9Y471-4|CMAHP;ENST00000490939.1_1_6:25087010-25108891:-|nuORF	nc|ENSG00000168405|Q9Y471|CMAHP	nc|ENSG00000168405|Q9Y471|CMAHP	MULTI-SECPEP	OvCa99_classI_Rep5	1	469.59375	3	469.577359	1405.71025	-0.25397	-0.00011926	-0.1753	-8.2316E-05	-0.42927	-0.00020157	469.5775466607126	48.641	0.53006	48.641	48.501	49.031	0					14	11	2	0	0	0	0.025378	1	3611	3611		43.651	11.617	1	219270			34522	15166	28398	28425	37976	37976					0.023620632320671575
LQRETGVPGL	10	Unmodified	_LQRETGVPGL_					0	0	0		ENST00000471934.1_1_1:44435799-44436661:+|nuORF;ENST00000527567.1_1_1:44435799-44436540:+|nuORF;ENST00000490861.5_1_1:44435799-44436893:+|nuORF;nc|ENSG00000132768|Q9BQC3-2|DPH2;ENSG00000132768|ENST00000255108|DPH2	ENST00000471934.1_1_1:44435799-44436661:+|nuORF	ENST00000471934.1_1_1:44435799-44436661:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	535.3060913085938	2	535.303655	1068.59276	0.71357	0.00038198	1.4202	0.00076026	2.1338	0.0011422	535.3043050781803	81.101	0.62704	81.101	80.827	81.455	0					24	14	2	0	0	0	0.37436	1	8334	8334		71.877	0.58177	1	3465600			34523	4172	28399	28426	37977	37977					0.061205303632732466
LQRFRFCGDL	10	Unmodified	_LQRFRFCGDL_					0	0	0		ENST00000564068.1_1_15:75630375-75630672:+|nuORF	ENST00000564068.1_1_15:75630375-75630672:+|nuORF	ENST00000564068.1_1_15:75630375-75630672:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.25384521484375	3	418.885247	1253.63391	0.13079	5.4785E-05	-0.96986	-0.00040626	-0.83907	-0.00035148	418.88489598108674	66.27	1.0306	66.27	65.867	66.898	0					41	25	2	0	0	0	0.026942	1	6144	6144		20.03	0	1	169000			34524	13798	28400	28427	37978	37978					0.017239681311139066
LQRGKFLLS	9	Unmodified	_LQRGKFLLS_					0	0	0		nc|ENSG00000167077|Q5TIA1-4|MEI1;MEI1|p.D538Efs*33|1|0.08|ENSG00000167077|chr22:41745959-41745960|-/ATACCGTTGCCTTACCATGAACCTGCTTTTGT|frameshift_variant;ENSG00000167077|ENST00000401548|MEI1	nc|ENSG00000167077|Q5TIA1-4|MEI1	nc|ENSG00000167077|Q5TIA1-4|MEI1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.7913818359375	2	531.326934	1060.63931	-1.3534	-0.0007191	0.48235	0.00025629	-0.87105	-0.00046281	531.326872222448	62.909	0.81849	59.452	59.259	60.078	-3.4577					22	16	2	0	0	0	0.027448	1	4467	4467		14.865	0	1	74465			34525	6749	28401	28428	37979	37979					0.1114201498521652
LQRKEEED	8	Unmodified	_LQRKEEED_					0	0	0		ENSG00000090615|ENST00000450791|GOLGA3;nc|ENSG00000090615|Q08378-2|GOLGA3	ENSG00000090615|ENST00000450791|GOLGA3	ENSG00000090615|ENST00000450791|GOLGA3	MULTI-MSMS	OvCa9_classI_Rep2	2	523.75830078125	2	523.759278	1045.504	0.93308	0.00048871	-3.8868	-0.0020358	-2.9538	-0.0015471	523.7571694319277	126.45	0.93601	126.22	125.8	126.74	-0.2359					31	18	2	0	0	0	0.61436	1	12325	12325		60.972	2.19	1	123630			34526	1843	28402	28429	37980	37980					-0.01692929667046883
LQRKEEED	8	Unmodified	_LQRKEEED_					0	0	0		ENSG00000090615|ENST00000450791|GOLGA3;nc|ENSG00000090615|Q08378-2|GOLGA3	ENSG00000090615|ENST00000450791|GOLGA3	ENSG00000090615|ENST00000450791|GOLGA3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	523.759278	1045.504	0.88009	0.00046095	-3.5747	-0.0018723	-2.6946	-0.0014113	523.7572895584316	127.22	0.83156	126.15	125.97	126.8	-1.0715	-0.011216	0.00015193	NaN	60.972	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67671			34527	1843	28402	28429							-0.01692929667046883
LQRKEEED	8	Unmodified	_LQRKEEED_					0	0	0		ENSG00000090615|ENST00000450791|GOLGA3;nc|ENSG00000090615|Q08378-2|GOLGA3	ENSG00000090615|ENST00000450791|GOLGA3	ENSG00000090615|ENST00000450791|GOLGA3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	523.759278	1045.504	-1.242	-0.00065051	-1.6198	-0.00084839	-2.8618	-0.0014989	523.7581849428283	127.55	0.92372	126.11	125.89	126.81	-1.4357	-0.047519	0.0021997	NaN	60.972	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54093			34528	1843	28402	28429							-0.01692929667046883
LQRLAPVV	8	Unmodified	_LQRLAPVV_					0	0	0			REV__ENSG00000162402|ENST00000294383|USP24	REV__ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	OvCa99_classI_Rep5	1	448.2915954589844	2	448.28982	894.565087	2.9241	0.0013109	-0.8528	-0.0003823	2.0713	0.00092855	448.28927568053894	84.706	0.61541	84.706	84.431	85.046	0					31	14	3	0	0	0	0.61758	1	8863	8863		60.294	4.7898	1	1750600	+		34529	20732	28403	28430	37981	37981					0.11358671893697192
LQRLAPVV	8	Unmodified	_LQRLAPVV_					0	0	0			REV__ENSG00000162402|ENST00000294383|USP24	REV__ENSG00000162402|ENST00000294383|USP24	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	448.28982	894.565087	2.9241	0.0013109	-0.8528	-0.0003823	2.0713	0.00092855	448.28927568053894	84.706	0.61541	84.706	84.431	85.046	0	0	0	NaN	60.294	31	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1750600	+		34530	20732	28403	28430							0.11358671893697192
LQRLLAPRDP	10	Unmodified	_LQRLLAPRDP_					0	0	0		ENST00000569236.5_1_16:27236541-27237087:-|nuORF	ENST00000569236.5_1_16:27236541-27237087:-|nuORF	ENST00000569236.5_1_16:27236541-27237087:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.8305053710938	2	589.853847	1177.69314	-0.4929	-0.00029074	3.3817	0.0019947	2.8888	0.001704	589.8563331160218	44.595	0.22166	44.595	44.484	44.706	0					7	4	2	0	0	0	0.026802	1	3034	3034		19.997	3.5236	1	114310			34531	13883	28404	28431	37982	37982					0.11140187416935987
LQRLMWKRTSL	11	Unmodified	_LQRLMWKRTSL_					0	0	0		nc|ENSG00000204403|Q6UXS9-6|CASP12;nc|ENSG00000204403|Q6UXS9-7|CASP12;nc|ENSG00000204403|Q6UXS9-5|CASP12;nc|ENSG00000204403|Q6UXS9-8|CASP12;nc|ENSG00000204403|Q6UXS9-3|CASP12	nc|ENSG00000204403|Q6UXS9-6|CASP12	nc|ENSG00000204403|Q6UXS9-6|CASP12	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.3057556152344	3	477.946618	1430.81802	-0.67042	-0.00032042	-1.4302	-0.00068357	-2.1006	-0.001004	478.2799054053467	41.605	1.1453	38.624	37.918	39.064	-2.9804					54	21	4	0	0	0	0.025995	1	1796	1796		17.833	0	1	42177			34532	15268	28405	28432	37983	37983					0.11984736561794307
LQRLPSVRT	9	Unmodified	_LQRLPSVRT_					0	0	0			REV__ENSG00000198173|ENST00000358047|FAM47C	REV__ENSG00000198173|ENST00000358047|FAM47C	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.3069458007812	2	535.327465	1068.64038	0.14112	7.5545E-05	-2.4414	-0.0013069	-2.3003	-0.0012314	535.3262171832536	70.834	0.46735	70.834	70.641	71.109	0					16	11	2	0	0	0	0.027462	1	6814	6814		27.882	15.071	1	453720	+		34533	22995	28406	28433	37984	37984					0.10880229354120274
LQRLSLEN	8	Unmodified	_LQRLSLEN_					0	0	0		nc|ENSG00000022556|Q9NX02-4|NLRP2;nc|ENSG00000022556|Q9NX02-5|NLRP2;nc|ENSG00000022556|Q9NX02-2|NLRP2;ENSG00000022556|ENST00000448584|NLRP2	nc|ENSG00000022556|Q9NX02-4|NLRP2	nc|ENSG00000022556|Q9NX02-4|NLRP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.2724914550781	2	486.777274	971.539994	-0.10409	-5.0668E-05	0.72746	0.00035411	0.62337	0.00030344	486.7774958693664	71.687	0.32643	71.687	71.466	71.792	0					11	7	2	0	0	0	0.028476	1	6953	6953		29.15	1.2673	1	353450			34534	1031	28407	28434	37985	37985					0.053085723004642205
LQRMAGRLE	9	Unmodified	_LQRMAGRLE_					0	0	0			REV__ENSG00000121851|ENST00000369314|POLR3GL	REV__ENSG00000121851|ENST00000369314|POLR3GL	MULTI-MSMS	OvCa9_classI_Rep2	2	537.2953491210938	2	537.29785	1072.58115	-1.8238	-0.00097994	-2.4454	-0.0013139	-4.2692	-0.0022938	537.2965706710853	60.933	2.3725	58.163	57.501	59.873	-2.7702					136	45	4	0	0	0	0.40667	1	4465	4465		51.335	0.14276	1	2338900	+		34535	18560	28408	28435	37986	37986					0.04776010068303549
LQRMRHLQR	9	Unmodified	_LQRMRHLQR_					0	0	0			REV__ENSG00000100092|ENST00000649765|SH3BP1	REV__ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	413.2414855957031	3	413.240136	1236.69858	0.19777	8.1725E-05	2.9852	0.0012336	3.183	0.0013153	413.2408339832691	65.031	2.6713	61.546	60.383	63.054	-3.4854					141	54	4	0	0	0	0.44248	1	4640	4640		47.96	0.73184	1	658720	+		34536	17363	28409	28436	37987	37987					0.08969587727756334
LQRNLSEL	8	Unmodified	_LQRNLSEL_					0	0	0		ENSG00000173269|ENST00000372027|MMRN2	ENSG00000173269|ENST00000372027|MMRN2	ENSG00000173269|ENST00000372027|MMRN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.7787780761719	2	486.777274	971.539994	-0.30373	-0.00014785	0.24613	0.00011981	-0.057596	-2.8037E-05	486.77726950418986	74.302	0.90423	71.071	70.676	71.58	-3.2308					31	18	2	0	0	0	0.45246	1	5807	5807		82.305	5.4584	1	732570			34537	7365	28410	28437	37988	37988					0.053085723004642205
LQRNVPLKV	9	Unmodified	_LQRNVPLKV_					0	0	0			REV__ENST00000503561.7_1_5:50057675-50130728:+|nuORF	REV__ENST00000503561.7_1_5:50057675-50130728:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.7996826171875	2	533.840208	1065.66586	-1.4379	-0.00076762	-3.0198	-0.0016121	-4.4578	-0.0023797	533.8379731380654	66.564	0.24625	63.074	62.951	63.198	-3.4902					6	4	2	0	0	0	0.027462	1	4839	4839		30.504	0	1	20752	+		34538	20261	28411	28438	37989	37989					0.13565703876543012
LQRPGVAVPL	10	Unmodified	_LQRPGVAVPL_					0	0	0		ENST00000556554.1_1_14:102552511-102553379:-|nuORF	ENST00000556554.1_1_14:102552511-102553379:-|nuORF	ENST00000556554.1_1_14:102552511-102553379:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.8147583007812	2	525.326934	1048.63931	-0.24774	-0.00013014	-0.61532	-0.00032325	-0.86306	-0.00045339	525.3266538720762	96.485	0.66183	94.059	93.709	94.371	-2.4256					22	12	2	0	0	0	0.026871	1	8478	8478		29.15	0	1	35015			34539	13666	28412	28439	37990	37990					0.11694014985209833
LQRPLFLAV	9	Unmodified	_LQRPLFLAV_					0	0	0		ENSG00000160951|ENST00000292513|PTGER1	ENSG00000160951|ENST00000292513|PTGER1	ENSG00000160951|ENST00000292513|PTGER1	MULTI-MSMS	OvCa9_classI_Rep2	2	528.8313598632812	2	528.831852	1055.64915	-0.18956	-0.00010025	-0.80035	-0.00042325	-0.98991	-0.0005235	528.8313269805972	82.617	1.785	81.018	80.54	82.325	-1.5988					96	35	5	0	0	0	0.21395	1	7042	7042		73.975	0	1	1158600			34540	6107	28413	28440	37991	37991					0.12355202990579528
LQRQESKKL	9	Unmodified	_LQRQESKKL_					0	0	0			REV__nc|ENSG00000124541|Q96EU6-2|RRP36	REV__nc|ENSG00000124541|Q96EU6-2|RRP36	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.296142578125	2	565.33803	1128.66151	1.227	0.00069369	1.3602	0.00076898	2.5873	0.0014627	565.3383249843525	61.231	1.1115	57.801	57.345	58.456	-3.43					46	22	3	0	0	0	0.027418	1	4173	4173		52.937	5.2794	1	66625	+		34541	18692	28414	28441	37992	37992					0.10232194662989968
LQRRERRYLQR	11	Unmodified	_LQRRERRYLQR_					0	0	0		nc|ENSG00000179362|Q86SG4-3|HMGN2P46;nc|ENSG00000179362|Q86SG4-2|HMGN2P46;nc|ENSG00000179362|Q86SG4|HMGN2P46	nc|ENSG00000179362|Q86SG4-3|HMGN2P46	nc|ENSG00000179362|Q86SG4-3|HMGN2P46	MULTI-MSMS	OvCa99_classI_Rep5	1	525.6447143554688	3	525.309718	1572.90732	-0.67522	-0.0003547	1.9903	0.0010455	1.315	0.0006908	525.3106099633284	24.052	0.44472	24.052	23.793	24.237	0					27	8	5	0	0	0	0.72575	1	392	392		5.6988	0.55642	1	151980			34542	15201	28415	28442	37993	37993					0.14378707565538207
LQRRLAKFTT	10	Unmodified	_LQRRLAKFTT_					0	0	0			REV__COX6A1-CAPZA1|1|fusion;REV__ENSG00000116489|ENST00000263168|CAPZA1	REV__ENSG00000116489|ENST00000263168|CAPZA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.89959716796875	3	411.919056	1232.73534	0.52391	0.00021581	-4.1703	-0.0017178	-3.6464	-0.001502	411.9167052673373	41.353	0.66494	41.353	41.059	41.724	0					20	14	2	0	0	0	0.027089	1	2590	2590		31.634	6.5083	1	47983	+		34543	16229;18302	28416	28443	37994	37994					0.1282816282530348
LQRRLQLE	8	Unmodified	_LQRRLQLE_					0	0	0			REV__MICAL3|p.E1822Afs*25|1|0.05|ENSG00000243156|chr22:17810794-17810795|-/G|frameshift_variant	REV__MICAL3|p.E1822Afs*25|1|0.05|ENSG00000243156|chr22:17810794-17810795|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	528.3193969726562	2	528.31964	1054.62473	-1.2877	-0.00068031	1.0635	0.00056189	-0.22415	-0.00011842	528.3201028484496	56.253	2.2315	53.449	52.879	55.11	-2.804					126	44	4	0	0	0	0.67745	1	3929	3929		47.916	3.7988	1	541320	+		34544	23465	28417	28444	37995	37995					0.09959942837076596
LQRRLVQIVM	10	Unmodified	_LQRRLVQIVM_					0	0	0		ENST00000373344.9_1_X:76939756-76939822:-|nuORF	ENST00000373344.9_1_X:76939756-76939822:-|nuORF	ENST00000373344.9_1_X:76939756-76939822:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.57769775390625	3	419.260425	1254.75945	0.24352	0.0001021	3.8331	0.0016071	4.0767	0.0017092	419.26255333847394	33.235	0.29689	33.235	33.087	33.384	0					8	5	2	0	0	0	0.026803	1	1504	1504		20.03	0	1	16799			34545	11007	28418	28445	37996	37996					0.14225679987316653
LQRSGPDQR	9	Unmodified	_LQRSGPDQR_					0	0	0		ENST00000498536.5_1_11:3109437-3111932:-|nuORF	ENST00000498536.5_1_11:3109437-3111932:-|nuORF	ENST00000498536.5_1_11:3109437-3111932:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3573608398438	2	528.780879	1055.5472	-0.9367	-0.00049531	-2.905	-0.0015361	-3.8417	-0.0020314	528.7792406797456	50.04	0.95855	50.04	49.593	50.551	0					31	18	2	0	0	0	0.027441	1	3832	3832		40.778	5.5774	1	699080			34546	12826	28419	28446	37997	37997					0.021653049008818925
LQRSKKKPK	9	Unmodified	_LQRSKKKPK_					0	0	0			REV__ENSG00000177311|ENST00000321464|ZBTB38	REV__ENSG00000177311|ENST00000321464|ZBTB38	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.80078125	2	556.866757	1111.71896	-0.61423	-0.00034204	-0.0050956	-2.8376E-06	-0.61932	-0.00034488	556.8664666434715	64.279	0.53741	64.279	64.051	64.588	0					19	12	2	0	0	0	0.027462	1	5834	5834		21.96	0	1	684180	+		34547	21998	28420	28447	37998	37998					0.16757081659216055
LQRTCGQLH	9	Unmodified	_LQRTCGQLH_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	MULTI-SECPEP	OvCa9_classI_Rep3	3	527.8170776367188	2	528.274375	1054.5342	0.088209	4.6598E-05	-0.82187	-0.00043417	-0.73366	-0.00038758	528.2737594848805	105.83	1.1452	104.48	103.94	105.08	-1.3482					48	21	3	0	0	0	0.027462	1	7423	7423		29.15	11.785	1	88492	+		34548	21314	28421	28448	37999	37999					0.009111505171631507
LQRTLMDFC	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LQRTLMDFC_					1	0	0		ENST00000358356.9_1_21:36260054-36260090:-|nuORF	ENST00000358356.9_1_21:36260054-36260090:-|nuORF	ENST00000358356.9_1_21:36260054-36260090:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	584.7821655273438	2	584.778102	1167.54165	-0.62142	-0.00036339	3.8178	0.0022325	3.1963	0.0018692	584.7805187996414	51.607	0.8392	51.607	51.374	52.214	0					40	19	3	0	0	0	0.22961	1	3998	3998		71.296	7.9894	1	2159600			34549	10733	28422	28449	38000	38000					-0.035418779974179415
LQRVEEMGAF	10	Oxidation (M)	_LQRVEEM(Oxidation (M))GAF_		LQRVEEM(1)GAF		LQRVEEM(62)GAF	0	0	1			REV__nc|ENSG00000138193|Q9P212-2|PLCE1	REV__nc|ENSG00000138193|Q9P212-2|PLCE1	MULTI-MSMS	OvCa99_classI_Rep5	1	598.293701171875	2	598.29243	1194.57031	1.4151	0.00084664	4.1155	0.0024622	5.5306	0.0033089	598.2947736045697	123.42	0.60119	123.42	123.18	123.79	0					27	12	3	0	0	0	0.44431	1	14255	14255		62.107	20.681	1	382520	+		34550	28883	28423	28450	38001	38001		635			-0.01919437096648835
LQRVIDYI	8	Unmodified	_LQRVIDYI_					0	0	0		ENSG00000117318|ENST00000374561|ID3	ENSG00000117318|ENST00000374561|ID3	ENSG00000117318|ENST00000374561|ID3	MULTI-MSMS	OvCa99_classI_Rep5	1	510.3025817871094	2	510.297842	1018.58113	1.9973	0.0010192	-0.21794	-0.00011121	1.7794	0.00090803	510.2975835138962	96.901	1.3694	96.901	96.625	97.995	0					73	31	4	0	0	0	0.35821	2	10616	10616;10643		96.19	10.831	1	9094100			34551	3247	28424	28451	38002;38003	38002					0.07258333339939327
LQRVKAVK	8	Unmodified	_LQRVKAVK_					0	0	0		nc|ENSG00000105792|A5D8W1-2|CFAP69;nc|ENSG00000105792|A5D8W1-5|CFAP69;ENSG00000105792|ENST00000389297|CFAP69	nc|ENSG00000105792|A5D8W1-2|CFAP69	nc|ENSG00000105792|A5D8W1-2|CFAP69	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.2562255859375	2	471.316369	940.618185	0.43234	0.00020377	0.85746	0.00040414	1.2898	0.0006079	471.31650843696127	46.176	0.44024	46.176	45.844	46.284	0					14	9	2	0	0	0	0.028476	1	3256	3256		25.45	0	1	158310			34552	2500	28425	28452	38004	38004					0.14550049676358867
LQSDPQNL	8	Unmodified	_LQSDPQNL_					0	0	0			REV__nc|ENSG00000197249|P01009-3|SERPINA1	REV__nc|ENSG00000197249|P01009-3|SERPINA1	MULTI-MSMS	OvCa99_classI_Rep5	1	457.7326965332031	2	457.732532	913.45051	-0.0022327	-1.022E-06	-0.12064	-5.522E-05	-0.12287	-5.6242E-05	457.73238563513803	44.926	0.79187	44.926	44.662	45.454	0					48	17	4	0	0	0	0.50747	1	3058	3058		76.774	0	1	4460400	+		34553	22904	28426	28453	38005	38005					-0.009676823789163791
LQSDTPWPEK	10	Unmodified	_LQSDTPWPEK_					0	0	0			REV__ENSG00000181215|ENST00000531445|C4orf50	REV__ENSG00000181215|ENST00000531445|C4orf50	MULTI-SECPEP	OvCa9_classI_Rep2	2	600.8501586914062	2	600.798403	1199.58225	-0.048994	-2.9435E-05	-1.3344	-0.0008017	-1.3834	-0.00083114	600.7973846424035	82.65	0.61336	81.052	80.802	81.415	-1.5989					14	11	2	0	0	0	0.026714	1	7060	7060		51.193	17.02	1	24130	+		34554	22221	28427	28454	38006	38006					-0.009554970818498987
LQSETEVPL	9	Unmodified	_LQSETEVPL_					0	0	0			REV__ENSG00000120279|ENST00000367245|MYCT1	REV__ENSG00000120279|ENST00000367245|MYCT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.8191223144531	2	508.268947	1014.52334	0.56317	0.00028624	1.0944	0.00055623	1.6575	0.00084247	508.26957287705835	72.228	0.36423	72.228	72.086	72.45	0					12	8	2	0	0	0	0.027455	1	7046	7046		26.693	0	1	304860	+		34555	18493	28428	28455	38007	38007					0.01666026623865946
LQSEVINNL	9	Unmodified	_LQSEVINNL_					0	0	0		tr|A0A7D7A4B4|A0A7D7A4B4_9CLOTTraB/GumNfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02310PE=4SV=1	tr|A0A7D7A4B4|A0A7D7A4B4_9CLOTTraB/GumNfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02310PE=4SV=1	tr|A0A7D7A4B4|A0A7D7A4B4_9CLOTTraB/GumNfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02310PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.2835693359375	2	515.282389	1028.55022	1.1234	0.00057886	1.1591	0.00059724	2.2824	0.0011761	515.2829636233931	79.163	1.2398	79.163	78.791	80.031	0					60	30	5	0	0	0	0.3076	1	8051	8051		62.107	3.8775	1	7020700			34556	36139	28429	28456	38008	38008					0.03709135235044414
LQSFRDEVKL	10	Unmodified	_LQSFRDEVKL_					0	0	0			REV__tr|A0A7D6W168|A0A7D6W168_9CLOTFtsW/RodA/SpoVEfamilycellcycleproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02600PE=4SV=1	REV__tr|A0A7D6W168|A0A7D6W168_9CLOTFtsW/RodA/SpoVEfamilycellcycleproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02600PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	412.23101806640625	3	412.231189	1233.67174	1.8624	0.00076774	-0.68691	-0.00028317	1.1755	0.00048458	412.2308612365413	65.473	2.1985	62.778	62.262	64.461	-2.6958					106	43	3	0	0	0	0.69073	1	5033	5033		23.378	2.3457	1	733070	+		34557	31878	28430	28457	38009	38009					0.06424757597551434
LQSGDVALVEP	11	Unmodified	_LQSGDVALVEP_					0	0	0			REV__ENST00000440326.1_1_2:208104861-208110222:+|nuORF	REV__ENST00000440326.1_1_2:208104861-208110222:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	564.3004760742188	2	564.300778	1126.587	1.1607	0.00065497	-2.5363	-0.0014312	-1.3756	-0.00077625	564.2991848172364	123.21	1.3481	122.17	121.84	123.18	-1.0377					40	23	2	0	0	0	0.52842	1	9500	9500		51.193	1.9819	1	156180	+		34558	25833	28431	28458	38010	38010					0.02877387060948422
LQSHHELKP	9	Unmodified	_LQSHHELKP_					0	0	0		nc|ENSG00000120693|O15198-2|SMAD9;ENSG00000170365|ENST00000302085|SMAD1;ENSG00000120693|ENST00000379826|SMAD9;ENSG00000113658|ENST00000545279|SMAD5	nc|ENSG00000120693|O15198-2|SMAD9	nc|ENSG00000120693|O15198-2|SMAD9	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2745971679688	2	544.795998	1087.57744	-0.0020123	-1.0963E-06	-0.051183	-2.7884E-05	-0.053195	-2.8981E-05	544.7959503369149	32.744	0.43687	32.744	32.553	32.989	0					25	8	4	0	0	0	0.027462	1	1469	1469		10.265	1.0823	1	145050			34559	3441	28432	28459	38011	38011					0.037156635660721804
LQSHITYRDT	10	Unmodified	_LQSHITYRDT_					0	0	0			REV__ENSG00000169976|ENST00000367569|SF3B5	REV__ENSG00000169976|ENST00000367569|SF3B5	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.89996337890625	3	411.878926	1232.61495	0.46443	0.00019129	0.72663	0.00029928	1.1911	0.00049057	411.8793567629455	41.483	0.70361	41.483	41.149	41.853	0					23	15	2	0	0	0	0.026942	1	2614	2614		26.063	5.2262	1	210000	+		34560	21503	28433	28460	38012	38012					0.007947100410319763
LQSHPENLLP	10	Unmodified	_LQSHPENLLP_					0	0	0		TNS3-PKD1L1|1|fusion;nc|ENSG00000158683|Q8TDX9-2|PKD1L1;ENSG00000158683|ENST00000289672|PKD1L1	TNS3-PKD1L1|1|fusion	TNS3-PKD1L1|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.2992553710938	2	574.308938	1146.60332	-1.1208	-0.00064368	0.74772	0.00042942	-0.37307	-0.00021426	574.3091205376469	97.4	1.5186	95.64	95.311	96.83	-1.7595					58	29	3	0	0	0	0.026548	1	6587	6587		63.534	28.382	1	68554			34561	32973	28434	28461	38013	38013					0.03588513017712103
LQSHPENLLP	10	Unmodified	_LQSHPENLLP_					0	0	0		TNS3-PKD1L1|1|fusion;nc|ENSG00000158683|Q8TDX9-2|PKD1L1;ENSG00000158683|ENST00000289672|PKD1L1	TNS3-PKD1L1|1|fusion	TNS3-PKD1L1|1|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	574.308938	1146.60332	-0.60151	-0.00034545	0.27954	0.00016054	-0.32197	-0.00018491	574.3090595599598	96.553	1.1821	95.594	95.281	96.464	-0.95857	-0.033901	-1.5746E-05	NaN	63.534	37	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54671			34562	32973	28434	28461							0.03588513017712103
LQSHPENLLP	10	Unmodified	_LQSHPENLLP_					0	0	0		TNS3-PKD1L1|1|fusion;nc|ENSG00000158683|Q8TDX9-2|PKD1L1;ENSG00000158683|ENST00000289672|PKD1L1	TNS3-PKD1L1|1|fusion	TNS3-PKD1L1|1|fusion	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	574.308938	1146.60332	-0.0093991	-5.398E-06	-0.15074	-8.6571E-05	-0.16014	-9.1969E-05	574.3087321702628	98.029	1.0105	95.65	95.267	96.277	-2.3786	0.021996	-0.00050998	NaN	63.534	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74380			34563	32973	28434	28461							0.03588513017712103
LQSILSHLE	9	Unmodified	_LQSILSHLE_					0	0	0			REV__nc|ENSG00000197168|Q6P3R8|NEK5	REV__nc|ENSG00000197168|Q6P3R8|NEK5	MULTI-MSMS	OvCa9_classI_Rep2	2	520.2926025390625	2	520.292756	1038.57096	-0.96898	-0.00050415	0.61629	0.00032065	-0.35268	-0.0001835	520.2929878067442	117.73	1.1913	117.58	117.19	118.38	-0.14754					43	23	2	0	0	0	0.38529	1	11286	11286		53.351	3.9099	1	211520	+		34564	22898	28435	28462	38014	38014					0.053217256147036096
LQSKALPRL	9	Unmodified	_LQSKALPRL_					0	0	0		ENST00000554048.2_1_19:57670623-57672140:-|nuORF	ENST00000554048.2_1_19:57670623-57672140:-|nuORF	ENST00000554048.2_1_19:57670623-57672140:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	513.3289184570312	2	513.326934	1024.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.898	1	65.408	64.908	65.908	-3.4902								0	0	0	0.19223	1	5132	5132		27.882	0	1				34565	13631	28436	28463	38015	38015					0.12798014985219197
LQSKTLIKP	9	Unmodified	_LQSKTLIKP_					0	0	0			REV__tr|A0A7D6W0Q6|A0A7D6W0Q6_9CLOTGTP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00720PE=3SV=1	REV__tr|A0A7D6W0Q6|A0A7D6W0Q6_9CLOTGTP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00720PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	514.7984008789062	2	514.329142	1026.64373	0.151	7.7664E-05	-0.86278	-0.00044375	-0.71178	-0.00036609	514.3292298533327	118.34	0.79302	117.31	117.03	117.83	-1.0324					19	15	2	0	0	0	0.027462	1	8899	8899		31.53	25.972	1	17316	+		34566	31862	28437	28464	38016	38016					0.13147479408166873
LQSLFCPKQ	9	Unmodified	_LQSLFCPKQ_					0	0	0			REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|6|1|sense	REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|6|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.3112182617188	2	532.283877	1062.5532	-1.3116	-0.00069813	2.9775	0.0015849	1.666	0.00088677	532.2851849461076	69.032	0.92512	65.542	65.411	66.336	-3.4902					20	18	2	0	0	0	0.027462	1	5135	5135		51.335	3.4199	1	22187	+		34567	28505	28438	28465	38017	38017					0.024426870882052754
LQSLILKII	9	Unmodified	_LQSLILKII_					0	0	0			REV__ENSG00000124780|ENST00000373231|KCNK17	REV__ENSG00000124780|ENST00000373231|KCNK17	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.74755859375	2	520.857535	1039.70052	-1.5086	-0.00078575	1.0702	0.00055741	-0.4384	-0.00022834	520.8577715447785	127.32	0.64996	125.89	125.69	126.34	-1.4357					18	12	2	0	0	0	0.027462	1	12181	12181		34.173	0	1	13711	+		34568	18704	28439	28466	38018	38018					0.18225526964647543
LQSLILKII	9	Unmodified	_LQSLILKII_					0	0	0			REV__ENSG00000124780|ENST00000373231|KCNK17	REV__ENSG00000124780|ENST00000373231|KCNK17	MULTI-MATCH	OvCa9_classI_Rep3	3		2	520.857535	1039.70052	1.2983	0.00067624	-1.6912	-0.00088088	-0.3929	-0.00020464	520.8565320075537	127.05	0.57091	125.98	125.76	126.33	-1.0715	0.043705	-0.00091375	NaN	34.173	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13103	+		34569	18704	28439	28466							0.18225526964647543
LQSLINNEI	9	Unmodified	_LQSLINNEI_					0	0	0		MCOLN1|p.L396*|1|0.4|ENSG00000090674|chr19:7529151-7529166|GCTGGTGTGGGTGGGC/-|frameshift_variant;ENSG00000090674|ENST00000264079|MCOLN1;ENST00000394321.9_1_19:7591427-7598678:+|nuORF	MCOLN1|p.L396*|1|0.4|ENSG00000090674|chr19:7529151-7529166|GCTGGTGTGGGTGGGC/-|frameshift_variant	MCOLN1|p.L396*|1|0.4|ENSG00000090674|chr19:7529151-7529166|GCTGGTGTGGGTGGGC/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.8017578125	2	522.290214	1042.56587	0.49688	0.00025952	-3.4353	-0.0017942	-2.9384	-0.0015347	522.2881637493946	139.6	0.60556	139.6	139.32	139.92	0					24	12	3	0	0	0	0.027455	1	16277	16277		43.651	0	1	40302			34570	1845	28440	28467	38019	38019					0.04629421752088092
LQSLLYIPL	9	Unmodified	_LQSLLYIPL_					0	0	0			REV__ENSG00000279051|ENST00000302622|OR6Q1	REV__ENSG00000279051|ENST00000302622|OR6Q1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8098754882812	2	530.326068	1058.63758	-0.67257	-0.00035668	3.9284	0.0020833	3.2558	0.0017266	530.3286409931533	104.59	0.50638	104.59	104.41	104.91	0					20	11	3	0	0	0	0.027456	1	11764	11764		30.504	0	1	943180	+		34571	23651	28441	28468	38020	38020					0.11060961176622186
LQSLPNDVE	9	Unmodified	_LQSLPNDVE_					0	0	0		ENST00000474676.1_1_9:126331853-126520026:-|nuORF;nc|ENSG00000119522|Q8TEH3-7|DENND1A	ENST00000474676.1_1_9:126331853-126520026:-|nuORF;nc|ENSG00000119522|Q8TEH3-7|DENND1A	nc|ENSG00000119522|Q8TEH3-7|DENND1A	MULTI-MSMS	OvCa99_classI_Rep5	1	507.762451171875	2	507.758746	1013.50294	-0.23202	-0.00011781	0.14846	7.5382E-05	-0.083558	-4.2427E-05	507.7586934420825	51.016	0.72945	51.016	50.775	51.504	0					42	16	4	0	0	0	0.075543	1	3899	3899		104.06	6.5841	1	4646500			34572	14985;12437	28442	28469	38021	38021					-0.003271440359526423
LQSLVRALN	9	Unmodified	_LQSLVRALN_					0	0	0			REV__ENSG00000132470|ENST00000200181|ITGB4	REV__ENSG00000132470|ENST00000200181|ITGB4	MULTI-MSMS	OvCa99_classI_Rep5	1	507.3099670410156	2	507.308741	1012.60293	-1.3666	-0.00069327	0.48708	0.0002471	-0.87948	-0.00044617	507.3089195195193	64.071	1.1839	64.071	63.732	64.916	0					65	28	4	0	0	0	0.22621	1	5820	5820		71.877	3.0313	1	10324000	+		34573	19082	28443	28470	38022	38022					0.09713138088511641
LQSQQSLPS	9	Unmodified	_LQSQQSLPS_					0	0	0			REV__nc|ENSG00000185359|O14964-2|HGS	REV__nc|ENSG00000185359|O14964-2|HGS	MSMS	OvCa9_classI_Rep4_	4	494.259033203125	2	494.258914	986.503274	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.22	1	68.764	68.264	69.264	-3.4563								0	0	0	0.11106	1	5542	5542		69.628	5.4204	1		+		34574	22497	28444	28471	38023	38023					0.009482756839133799
LQSSFVKKWFF	11	Unmodified	_LQSSFVKKWFF_					0	0	0			REV__HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|87|3|sense	REV__HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|87|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.27752685546875	3	472.927329	1415.76016	-1.134	-0.00053631	1.6869	0.00079776	0.55283	0.00026145	472.92823048318485	70.059	0.44827	70.059	69.798	70.246	0					26	10	4	0	0	0	0.025722	1	6670	6670		21.78	1.4654	1	847320	+		34575	28296	28445	28472	38024	38024					0.0689079790802225
LQSSLLPPSP	10	Unmodified	_LQSSLLPPSP_					0	0	0			REV__nc|ENSG00000187243|Q96JG8-3|MAGED4	REV__nc|ENSG00000187243|Q96JG8-3|MAGED4	MULTI-MSMS	OvCa9_classI_Rep2	2	519.7938232421875	2	519.795132	1037.57571	-0.83173	-0.00043233	-1.6752	-0.00087074	-2.5069	-0.0013031	519.7941003158112	120.39	3.5079	120.22	119.69	123.2	-0.17137					148	70	4	0	0	0	0.58067	1	11656	11656		44.377	0.26039	1	553870	+		34576	26264	28446	28473	38025	38025					0.05842609757473838
LQSYDWSSL	9	Unmodified	_LQSYDWSSL_					0	0	0			REV__chr11:62717189-62718568|110|28.06|0.0|21.42|-|1|TE_info:AluSx1,AluSx1_dup70421,Alu,SINE,donor,+,62718568,62718713|HNRNPUL2-BSCL2,None|2	REV__chr11:62717189-62718568|110|28.06|0.0|21.42|-|1|TE_info:AluSx1,AluSx1_dup70421,Alu,SINE,donor,+,62718568,62718713|HNRNPUL2-BSCL2,None|2	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.8651123046875	2	549.758746	1097.50294	-0.52344	-0.00028776	3.7519	0.0020626	3.2285	0.0017749	549.7605488516937	56.022	0.73671	56.022	55.723	56.459	0					33	17	3	0	0	0	0.027462	1	4596	4596		34.173	0	1	804220	+		34577	15864	28447	28474	38026	38026					-0.041911440359626795
LQTAQQQPL	9	Unmodified	_LQTAQQQPL_					0	0	0		nc|ENSG00000135365|Q96BD5-2|PHF21A;nc|ENSG00000135365|Q96BD5|PHF21A;ENSG00000135365|ENST00000676320|PHF21A	nc|ENSG00000135365|Q96BD5-2|PHF21A	nc|ENSG00000135365|Q96BD5-2|PHF21A	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.8367919921875	2	513.782556	1025.55056	0.47026	0.00024161	2.8531	0.0014659	3.3233	0.0017075	513.7838992235103	111.57	1.3799	111.43	111.13	112.51	-0.13961					45	27	2	0	0	0	0.027448	1	10583	10583		53.351	0	1	133760			34578	4370	28448	28475	38027	38027					0.03880554954912441
LQTAYRCE	8	Unmodified	_LQTAYRCE_					0	0	0			REV__CON__A2A4G1	REV__CON__A2A4G1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.80670166015625	2	492.234384	982.454216	0.49473	0.00024353	-0.30307	-0.00014918	0.19167	9.4345E-05	492.2342781595931	98.225	0.96135	95.846	95.573	96.534	-2.3786					23	18	2	0	0	0	0.028476	1	8759	8759		38.806	0	1	34633	+	+	34579	16167	28449	28476	38028	38028					-0.037713358767064165
LQTDIHELTS	10	Unmodified	_LQTDIHELTS_					0	0	0		ENSG00000221866|ENST00000321063|PLXNA4	ENSG00000221866|ENST00000321063|PLXNA4	ENSG00000221866|ENST00000321063|PLXNA4	MULTI-MSMS	OvCa9_classI_Rep3	3	578.7908935546875	2	578.79586	1155.57717	-7.2267	-0.0041828	-0.71805	-0.0004156	-7.9447	-0.0045984	578.7954844331674	158.61	3.485	157.34	154.49	157.97	-1.267					113	86	2	0	0	0	0.66721	1	13587	13587		34.173	0.25091	1	22822			34580	9231	28450	28477	38029	38029					0.005601990555533121
LQTHPRVR	8	Unmodified	_LQTHPRVR_					0	0	0		ENST00000436427.1_3_1:43148660-43161876:+|nuORF	ENST00000436427.1_3_1:43148660-43161876:+|nuORF	ENST00000436427.1_3_1:43148660-43161876:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.2762145996094	2	503.798875	1005.5832	2.2896	0.0011535	2.9568	0.0014897	5.2465	0.0026432	504.30206350486304	84.255	0.38053	84.255	83.965	84.345	0					16	8	2	0	0	0	0.028476	1	8776	8776		19.36	0	1	117700			34581	11875	28451	28478	38030	38030					0.08062806868417738
LQTKERLIE	9	Unmodified	_LQTKERLIE_					0	0	0			REV__sp|P16792|TRM2_HCMVATripartiteterminasesubunit2OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM2PE=3SV=1	REV__sp|P16792|TRM2_HCMVATripartiteterminasesubunit2OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM2PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	565.3069458007812	2	565.332413	1128.65027	-0.091975	-5.1996E-05	4.4304	0.0025047	4.3385	0.0024527	565.8368406335421	97.756	1.0776	96.797	96.315	97.393	-0.95856					47	21	4	0	0	0	0.027026	1	8817	8817		107.01	13.812	1	32651	+		34582	29413	28452	28479	38031	38031					0.09109372568855179
LQTKRRVLS	9	Unmodified	_LQTKRRVLS_					0	0	0		nc|ENSG00000228459|A6NGU7-2|LINC01546	nc|ENSG00000228459|A6NGU7-2|LINC01546	nc|ENSG00000228459|A6NGU7-2|LINC01546	MULTI-MSMS	OvCa99_classI_Rep5	1	550.8472290039062	2	550.848564	1099.68258	1.7217	0.00094841	-3.4002	-0.001873	-1.6784	-0.00092456	550.8467594927862	118.35	0.56221	118.35	118.11	118.67	0					26	11	4	0	0	0	0.48047	1	13581	13581		44.377	5.1244	1	217040			34583	15325	28453	28480	38032	38032					0.13672204762519868
LQTLAAHP	8	Unmodified	_LQTLAAHP_					0	0	0		nc|ENSG00000196943|Q86U38-2|NOP9;NOP9|p.R413Tfs*41|1|0.03|ENSG00000196943|chr14:24303166-24303167|-/A|frameshift_variant;ENSG00000196943|ENST00000267425|NOP9	nc|ENSG00000196943|Q86U38-2|NOP9	nc|ENSG00000196943|Q86U38-2|NOP9	MULTI-SECPEP	OvCa99_classI_Rep5	1	426.2355651855469	2	425.742702	849.470852	1.5693	0.00066811	0.78024	0.00033218	2.3495	0.0010003	425.7430084641665	105.78	0.43835	105.78	105.62	106.05	0					16	9	2	0	0	0	0.028476	1	11910	11910		68.485	0	1	124640			34584	15247	28454	28481	38033	38033					0.040095330715644195
LQTLPVTPN	9	Unmodified	_LQTLPVTPN_					0	0	0		ENSG00000136542|ENST00000259056|GALNT5	ENSG00000136542|ENST00000259056|GALNT5	ENSG00000136542|ENST00000259056|GALNT5	MULTI-MSMS	OvCa9_classI_Rep2	2	491.7868347167969	2	491.782025	981.549496	3.7555	0.0018469	4.331	0.0021299	8.0866	0.0039768	491.78412902476117	26.103	0.75454	23.393	23.207	23.961	-2.7097					24	17	2	0	0	0	0.60342	1	332	332		31.53	4.8369	1	45243			34585	4497	28455	28482	38034	38034					0.05798340585988626
LQTLRILI	8	Unmodified	_LQTLRILI_					0	0	0		ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	ENSG00000106397|ENST00000223127|PLOD3	MULTI-MSMS	OvCa99_classI_Rep5	1	486.32928466796875	2	485.326402	968.638252	1.8014	0.00087427	-0.26926	-0.00013068	1.5321	0.00074359	485.326458571627	133.67	1.2123	133.67	133.17	134.38	0					63	25	3	0	0	0	0.74754	1	15522	15522		27.882	0	1	335120			34586	2548	28456	28483	38035	38035					0.15267800616322802
LQTQAHVI	8	Unmodified	_LQTQAHVI_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MSMS	OvCa99_classI_Rep5	1	455.26275634765625	2	455.261259	908.507966	0.37877	0.00017244	-0.14854	-6.7623E-05	0.23024	0.00010482	455.2610460307486	58.17	0.67298	58.17	57.899	58.572	0					32	15	3	0	0	0	0.23117	1	4931	4931		119.56	30.914	1	2026500			34587	4035	28457	28484	38036	38036					0.050052046173163944
LQTQAHVI	8	Unmodified	_LQTQAHVI_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12;nc|ENSG00000131016|Q02952-3|AKAP12;nc|ENSG00000131016|Q02952-2|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	455.261259	908.507966	0.33701	0.00015343	-0.16891	-7.6897E-05	0.1681	7.653E-05	455.2609659266026	61.908	1.2062	58.45	58.244	59.45	-3.4577	0.13991	-1.5743E-05	NaN	119.56	42	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134090			34588	4035	28457	28484							0.050052046173163944
LQTQKRAR	8	Unmodified	_LQTQKRAR_					0	0	0		nc|ENSG00000141994|Q96G46-2|DUS3L;ENSG00000141994|ENST00000309061|DUS3L;ENST00000589854.1_1_19:5790042-5791152:-|nuORF	nc|ENSG00000141994|Q96G46-2|DUS3L	nc|ENSG00000141994|Q96G46-2|DUS3L	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.809814453125	2	500.804157	999.593761	0.092052	4.61E-05	2.2346	0.0011191	2.3266	0.0011652	500.8052646221799	62.55	0.76284	62.55	62.253	63.016	0					39	18	4	0	0	0	0.028476	1	5543	5543		23.042	4.7181	1	2012500			34589	4951	28458	28485	38037	38037					0.09394789522843894
LQTRLIISH	9	Unmodified	_LQTRLIISH_					0	0	0			REV__nc|ENSG00000134775|Q2V2M9-2|FHOD3	REV__nc|ENSG00000134775|Q2V2M9-2|FHOD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.6642456054688	2	540.82984	1079.64513	2.8893	0.0015626	2.9883	0.0016162	5.8776	0.0031788	540.831110305236	90.105	0.4231	90.105	89.763	90.186	0					14	9	3	0	0	0	0.027461	1	9624	9624		32.812	0	1	420130	+		34590	19233	28459	28486	38038	38038					0.10849113496919927
LQTRLNRYLEE	11	Unmodified	_LQTRLNRYLEE_					0	0	0			REV__ENSG00000170264|ENST00000404929|FAM161A	REV__ENSG00000170264|ENST00000404929|FAM161A	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.3005065917969	3	478.928169	1433.76268	-0.41396	-0.00019826	-0.50283	-0.00024082	-0.91679	-0.00043908	478.9278848536859	86.401	0.52976	84.91	84.692	85.222	-1.4906					14	9	2	0	0	0	0.026382	1	7537	7537		19.627	2.4602	1	18440	+		34591	21525	28460	28487	38039	38039					0.06314601575081724
LQTSAVVLKN	10	Unmodified	_LQTSAVVLKN_					0	0	0		nc|ENSG00000110422|Q9H422-2|HIPK3;ENSG00000110422|ENST00000303296|HIPK3	nc|ENSG00000110422|Q9H422-2|HIPK3	nc|ENSG00000110422|Q9H422-2|HIPK3	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.2498779296875	2	536.821681	1071.62881	2.1468	0.0011524	1.4324	0.00076893	3.5792	0.0019214	536.8222186906794	120.17	1.178	119.15	118.58	119.75	-1.0271					36	23	3	0	0	0	0.026493	1	9180	9180		61.691	0	1	109540			34592	2773	28461	28488	38040	38040					0.09585987540140195
LQVDITLLQ	9	Unmodified	_LQVDITLLQ_					0	0	0		tr|A0A7D6VWR8|A0A7D6VWR8_9CLOTHomoserineO-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=metAPE=3SV=1	tr|A0A7D6VWR8|A0A7D6VWR8_9CLOTHomoserineO-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=metAPE=3SV=1	tr|A0A7D6VWR8|A0A7D6VWR8_9CLOTHomoserineO-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=metAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.2539672851562	2	521.810782	1041.60701	-1.9266	-0.0010053	1.5778	0.00082332	-0.34882	-0.00018202	521.8116199079669	104.46	0.34189	104.46	104.24	104.58	0					17	7	3	0	0	0	0.027462	1	11688	11688		26.693	0	1	579860			34593	35258	28462	28489	38041	38041					0.0878718279154782
LQVERPVILT	10	Unmodified	_LQVERPVILT_					0	0	0			REV__tr|A0A553SFQ3|A0A553SFQ3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09340PE=4SV=1	REV__tr|A0A553SFQ3|A0A553SFQ3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09340PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	584.3558349609375	2	584.358431	1166.70231	-4.6254	-0.0027029	1.1397	0.00066599	-3.4857	-0.0020369	584.3589865391973	145.25	4.5766	144.28	142.9	147.48	-0.97299					233	91	4	0	0	0	0.74374	1	12123	12123		25.574	3.6142	1	156220	+		34594	29605	28463	28490	38042	38042					0.1256253598260173
LQVGANDGQ	9	Unmodified	_LQVGANDGQ_					0	0	0		tr|A0A553SIV7|A0A553SIV7_NIACIFlagellinOS=NialliacirculansOX=1397GN=CEQ21_15610PE=3SV=1;tr|A0A553SIW2|A0A553SIW2_NIACIFlagellinOS=NialliacirculansOX=1397GN=CEQ21_15615PE=3SV=1;tr|A0A553SIV9|A0A553SIV9_NIACIFlagellinOS=NialliacirculansOX=1397GN=CEQ21_15605PE=3SV=1	tr|A0A553SIV7|A0A553SIV7_NIACIFlagellinOS=NialliacirculansOX=1397GN=CEQ21_15610PE=3SV=1	tr|A0A553SIV7|A0A553SIV7_NIACIFlagellinOS=NialliacirculansOX=1397GN=CEQ21_15610PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.7431640625	2	451.222331	900.430109	-0.25621	-0.00011561	1.5394	0.00069463	1.2832	0.00057902	451.22211393370054	41.817	2.6972	38.837	38.023	40.72	-2.9804					63	51	2	0	0	0	0.027462	1	2104	2104		42.396	8.8806	1	20317			34595	33430	28464	28491	38043	38043					-0.024088530387189167
LQVIAPLP	8	Unmodified	_LQVIAPLP_					0	0	0			REV__tr|A0A7D6ZUE5|A0A7D6ZUE5_9CLOTNAD(P)/FAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23815PE=4SV=1	REV__tr|A0A7D6ZUE5|A0A7D6ZUE5_9CLOTNAD(P)/FAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23815PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	425.7754821777344	2	425.773471	849.53239	-0.54738	-0.00023306	3.7264	0.0015866	3.179	0.0013535	425.7749745888364	69.607	2.0379	66.126	65.811	67.849	-3.4812					126	41	5	0	0	0	0.74816	1	5239	5239		15.636	0	1	3927600	+		34596	32218	28465	28492	38044	38044					0.10160464770854105
LQVIMVILF	9	Unmodified	_LQVIMVILF_					0	0	0		ENSG00000140519|ENST00000268122|RHCG	ENSG00000140519|ENST00000268122|RHCG	ENSG00000140519|ENST00000268122|RHCG	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.3265991210938	2	538.332839	1074.65112	-6.8958	-0.0037122	-3.8612	-0.0020786	-10.757	-0.0057908	538.3306472316852	159.34	1.4158	157.75	157.44	158.85	-1.5859					96	33	4	0	0	0	0.6959	1	15766	15766		19.36	0	1	453340			34597	4852	28466	28493	38045	38045					0.11678495684191148
LQVKLLQP	8	Unmodified	_LQVKLLQP_					0	0	0			REV__MDN1|p.I5359Kfs*8|1|0.1|ENSG00000112159|chr6:89650154-89650155|-/CATAGCT|frameshift_variant	REV__MDN1|p.I5359Kfs*8|1|0.1|ENSG00000112159|chr6:89650154-89650155|-/CATAGCT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	469.8047790527344	2	469.805303	937.596052	1.6673	0.00078329	-1.4958	-0.00070272	0.1715	8.0571E-05	469.80448066325135	89.164	1.9776	87.796	87.379	89.356	-1.3676					94	39	4	0	0	0	0.47599	1	7824	7824		79.939	5.9645	1	442660	+		34598	18079	28467	28494	38046	38046					0.12475825207945945
LQVKNQLPQ	9	Unmodified	_LQVKNQLPQ_					0	0	0			REV__ENSG00000036473|ENST00000039007|OTC	REV__ENSG00000036473|ENST00000039007|OTC	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.7979125976562	2	534.314023	1066.61349	2.3753	0.0012692	-0.69696	-0.0003724	1.6783	0.00089676	534.3133116279164	91.774	0.50505	91.774	91.459	91.964	0					15	11	2	0	0	0	0.027462	1	9913	9913		16.473	10.915	1	287290	+		34599	16606	28468	28495	38047	38047					0.08285120742925756
LQVKRFGNQV	10	Unmodified	_LQVKRFGNQV_					0	0	0			REV__nc|ENSG00000182871|P39060|COL18A1	REV__nc|ENSG00000182871|P39060|COL18A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.3291015625	2	594.846022	1187.67749	0.098782	5.876E-05	1.9481	0.0011588	2.0468	0.0012176	594.8477585370354	63.619	0.83361	63.619	63.257	64.091	0					19	9	3	0	0	0	0.027088	1	5738	5738		14.137	5.4434	1	360900	+		34600	29043	28469	28496	38048	38048					0.09115900899882945
LQVLDPVPK	9	Unmodified	_LQVLDPVPK_					0	0	0		ENSG00000117091|ENST00000368046|CD48	ENSG00000117091|ENST00000368046|CD48	ENSG00000117091|ENST00000368046|CD48	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.2781677246094	2	504.808042	1007.60153	2.2348	0.0011282	-3.6235	-0.0018292	-1.3887	-0.00070102	505.3050660989465	86.977	0.57803	86.977	86.679	87.257	0					36	13	4	0	0	0	0.027462	1	9214	9214		23.042	0	1	725580			34601	3233	28470	28497	38049	38049					0.09803503999751229
LQVLGMLW	8	Unmodified	_LQVLGMLW_					0	0	0		ENST00000531017.5_1_19:50314409-50316363:-|nuORF	ENST00000531017.5_1_19:50314409-50316363:-|nuORF	ENST00000531017.5_1_19:50314409-50316363:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.77130126953125	2	480.272781	958.531009	-0.41583	-0.00019971	3.9876	0.0019151	3.5717	0.0017154	480.2742717572891	35.235	0.47025	35.235	35.004	35.475	0					12	9	2	0	0	0	0.028476	1	1740	1740		21.702	0	1	103940			34602	13300	28471	28498	38050	38050					0.05008507410445873
LQVLGVNQS	9	Unmodified	_LQVLGVNQS_					0	0	0			REV__tr|A0A553SIQ4|A0A553SIQ4_NIACIPurinepermeaseOS=NialliacirculansOX=1397GN=CEQ21_15300PE=3SV=1	REV__tr|A0A553SIQ4|A0A553SIQ4_NIACIPurinepermeaseOS=NialliacirculansOX=1397GN=CEQ21_15300PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.2705383300781	2	479.271824	956.529095	-4.561	-0.002186	3.2386	0.0015522	-1.3225	-0.00063382	479.2731551410573	155.53	0.63069	154.04	153.82	154.45	-1.4911					29	16	2	0	0	0	0.5811	1	15423	15423		34.173	6.2903	1	63614	+		34603	29917	28472	28499	38051	38051					0.049091699261907706
LQVLGVNQS	9	Unmodified	_LQVLGVNQS_					0	0	0			REV__tr|A0A553SIQ4|A0A553SIQ4_NIACIPurinepermeaseOS=NialliacirculansOX=1397GN=CEQ21_15300PE=3SV=1	REV__tr|A0A553SIQ4|A0A553SIQ4_NIACIPurinepermeaseOS=NialliacirculansOX=1397GN=CEQ21_15300PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	479.271824	956.529095	-5.2224	-0.0025029	2.742	0.0013141	-2.4804	-0.0011888	479.2729169524076	155.03	0.65959	153.95	153.69	154.35	-1.073	-0.10041	-0.00056892	NaN	34.173	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28248	+		34604	29917	28472	28499							0.049091699261907706
LQVMKLGNP	9	Unmodified	_LQVMKLGNP_					0	0	0		CDKN2C|p.A41G|1|0.28|ENSG00000123080|chr1:50970490-50970490|C/G|missense_variant;ENSG00000123080|ENST00000371761|CDKN2C	CDKN2C|p.A41G|1|0.28|ENSG00000123080|chr1:50970490-50970490|C/G|missense_variant	CDKN2C|p.A41G|1|0.28|ENSG00000123080|chr1:50970490-50970490|C/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.31268310546875	2	500.28642	998.558287	0.89108	0.00044579	2.9483	0.001475	3.8394	0.0019208	500.2877246562787	129.32	0.14789	127.87	127.79	127.94	-1.4565					4	2	2	0	0	0	0.027462	1	12382	12382		23.042	4.7181	1	7098.7			34605	215	28473	28500	38052	38052					0.05894990950821466
LQVPRLPQ	8	Unmodified	_LQVPRLPQ_					0	0	0		ENST00000598519.1_1_19:55987989-55992892:+|nuORF	ENST00000598519.1_1_19:55987989-55992892:+|nuORF	ENST00000598519.1_1_19:55987989-55992892:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	474.9175109863281	2	475.792727	949.5709	-0.25218	-0.00011999	0.3815	0.00018151	0.12931	6.1526E-05	475.79263536491766	93.56	0.99112	92.392	92.105	93.096	-1.168					30	18	2	0	0	0	0.028476	1	8353	8353		33.516	0	1	64530			34606	14196	28474	28501	38053	38053					0.09409770405375184
LQVPRLPQ	8	Unmodified	_LQVPRLPQ_					0	0	0		ENST00000598519.1_1_19:55987989-55992892:+|nuORF	ENST00000598519.1_1_19:55987989-55992892:+|nuORF	ENST00000598519.1_1_19:55987989-55992892:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	475.792727	949.5709	0.19012	9.0459E-05	-0.22171	-0.00010549	-0.031586	-1.5029E-05	475.7923882117499	94.359	0.75994	92.464	92.204	92.964	-1.8956	0.0034163	1.7734E-05	NaN	12.207	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76750			34607	14196	28474	28501							0.09409770405375184
LQVPVGLTV	9	Unmodified	_LQVPVGLTV_					0	0	0		nc|ENSG00000163964|Q8TBF5-2|PIGX;ENSG00000163964|ENST00000392391|PIGX	nc|ENSG00000163964|Q8TBF5-2|PIGX	nc|ENSG00000163964|Q8TBF5-2|PIGX	MULTI-MSMS	OvCa99_classI_Rep5	1	463.2908935546875	2	463.289485	924.564418	1.8113	0.00083917	-0.39074	-0.00018103	1.4206	0.00065815	463.2889784318492	78.784	0.78464	78.784	78.294	79.079	0					26	18	2	0	0	0	0.27001	1	8000	8000		66.429	5.4573	1	685520			34608	6390	28475	28502	38054	38054					0.0991183245398588
LQVQKFTH	8	Unmodified	_LQVQKFTH_					0	0	0			REV__ENSG00000096433|ENST00000605930|ITPR3	REV__ENSG00000096433|ENST00000605930|ITPR3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.7198486328125	2	500.782359	999.550165	-1.48	-0.00074117	-2.3889	-0.0011963	-3.8689	-0.0019375	500.780686201404	44.514	1.2819	41.476	41.156	42.438	-3.0385					47	24	3	0	0	0	0.028476	1	2313	2313		3.41	0.48058	1	121790	+		34609	17307	28476	28503	38055	38055					0.050371800257153154
LQVQNIKL	8	Unmodified	_LQVQNIKL_					0	0	0		ENSG00000150048|ENST00000315330|CLEC1A	ENSG00000150048|ENST00000315330|CLEC1A	ENSG00000150048|ENST00000315330|CLEC1A	MULTI-MSMS	OvCa9_classI_Rep3	3	478.301513671875	2	478.300384	954.586216	-0.36997	-0.00017696	-0.0044931	-2.149E-06	-0.37446	-0.00017911	478.3002960262904	87.187	1.2306	85.01	84.784	86.015	-2.1768					66	23	4	0	0	0	0.47599	1	5240	5240		79.939	5.9645	1	959670			34610	5498	28477	28504	38056	38056					0.10710637202555517
LQVRGPPATL	10	Unmodified	_LQVRGPPATL_					0	0	0		ENST00000306799.7_1_4:142054071-142054365:-|nuORF	ENST00000306799.7_1_4:142054071-142054365:-|nuORF	ENST00000306799.7_1_4:142054071-142054365:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	526.3158569335938	2	526.316566	1050.61858	1.4872	0.00078273	-2.724	-0.0014337	-1.2369	-0.00065098	526.3150539679418	125.72	2.3814	125.72	125.11	127.49	0					116	54	3	0	0	0	0.52439	1	14625	14625		51.193	1.7511	1	273860			34611	10246	28478	28505	38057	38057					0.09529424605557324
LQVRVPLL	8	Unmodified	_LQVRVPLL_					0	0	0			REV__ENSG00000203499|ENST00000527139|IQANK1	REV__ENSG00000203499|ENST00000527139|IQANK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	469.3133239746094	2	469.313295	936.612037	-0.19784	-9.2849E-05	0.13468	6.3207E-05	-0.063161	-2.9642E-05	469.31321334770007	121.04	0.91049	119.69	119.39	120.31	-1.3479					40	17	3	0	0	0	0.65582	1	11392	11392		52.299	7.7681	1	100360	+		34612	23104	28479	28506	38058	38058					0.14119531444839595
LQVRVPLL	8	Unmodified	_LQVRVPLL_					0	0	0			REV__ENSG00000203499|ENST00000527139|IQANK1	REV__ENSG00000203499|ENST00000527139|IQANK1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	469.313295	936.612037	1.5171	0.000712	-1.8222	-0.00085517	-0.30506	-0.00014317	469.31228470920274	120.68	1.0651	119.65	119.31	120.38	-1.0271	0.067266	-0.0019155	NaN	52.299	44	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114040	+		34613	23104	28479	28506							0.14119531444839595
LQVSSSSDS	9	Unmodified	_LQVSSSSDS_					0	0	0		ENSG00000168411|ENST00000361070|RFWD3	ENSG00000168411|ENST00000361070|RFWD3	ENSG00000168411|ENST00000361070|RFWD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	455.2572937011719	2	455.211629	908.408705	2.3293	0.0010603	4.2066	0.0019149	6.5359	0.0029752	455.2134225631983	82.781	0.72694	82.781	82.522	83.249	0					32	16	3	0	0	0	0.027447	1	8552	8552		31.53	1.0262	1	821730			34614	6905	28480	28507	38059	38059					-0.04916282858084742
LQVTGLLNV	9	Unmodified	_LQVTGLLNV_					0	0	0			REV__ENST00000591746.1_2_18:13726821-13730717:+|nuORF	REV__ENST00000591746.1_2_18:13726821-13730717:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	479.2948303222656	2	478.792392	955.570232	1.9706	0.0009435	0.49753	0.00023821	2.4681	0.0011817	478.79242205018426	136.24	0.51645	136.24	135.97	136.49	0					19	10	3	0	0	0	0.49652	1	15872	15872		42.864	1.4377	1	135310	+		34615	25219	28481	28508	38060	38060					0.09066930965661868
LQVTRKLL	8	Unmodified	_LQVTRKLL_					0	0	0		ENSG00000131471|ENST00000308423|AOC3;nc|ENSG00000131471|Q16853-2|AOC3;nc|ENSG00000131471|Q16853-3|AOC3	ENSG00000131471|ENST00000308423|AOC3	ENSG00000131471|ENST00000308423|AOC3	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.7912292480469	2	485.824027	969.633501	-0.50077	-0.00024329	-0.066905	-3.2504E-05	-0.56768	-0.00027579	485.8238988812661	67.776	0.86691	67.776	67.489	68.356	0					64	21	5	0	0	0	0.028476	1	6409	6409		17.365	0	1	2582300			34616	4069	28482	28509	38061	38061					0.14746916473552574
LQVVLLSDI	9	Unmodified	_LQVVLLSDI_					0	0	0			REV__tr|A0A553SSM9|A0A553SSM9_NIACICof-typeHAD-IIBfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_03425PE=4SV=1	REV__tr|A0A553SSM9|A0A553SSM9_NIACICof-typeHAD-IIBfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_03425PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	500.30743408203125	2	500.307875	998.601197	0.45654	0.00022841	-0.95662	-0.0004786	-0.50007	-0.00025019	500.3072384549448	160.94	0.95584	160.94	160.61	161.56	0					45	18	4	0	0	0	0.42676	1	18916	18916		49.442	5.3247	1	594550	+		34617	30852	28483	28510	38062	38062					0.10184084279910621
LQVVPRLN	8	Unmodified	_LQVVPRLN_					0	0	0			REV__AHDC1|p.M539Sfs*46|1|0.61|ENSG00000126705|chr1:27550500-27550500|A/-|frameshift_variant;REV__ENSG00000126705|ENST00000673934|AHDC1	REV__AHDC1|p.M539Sfs*46|1|0.61|ENSG00000126705|chr1:27550500-27550500|A/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	469.7572021484375	2	469.792727	937.5709	0.029499	1.3859E-05	-0.80855	-0.00037985	-0.77905	-0.00036599	469.7925415755804	60.608	0.70702	60.608	60.277	60.984	0					36	16	4	0	0	0	0.028476	1	5311	5311		53.351	7.3995	1	334870	+		34618	15580;18791	28484	28511	38063	38063					0.09961770405357129
LQVVQEEIPI	10	Unmodified	_LQVVQEEIPI_					0	0	0		nc|ENSG00000009694|Q9UKZ4-2|TENM1;ENSG00000009694|ENST00000371130|TENM1;TENM1|p.Y2196*|1|0.08|ENSG00000009694|chrX:124384322-124384322|A/-|frameshift_variant	nc|ENSG00000009694|Q9UKZ4-2|TENM1	nc|ENSG00000009694|Q9UKZ4-2|TENM1	MULTI-MSMS	OvCa99_classI_Rep5	1	584.3336791992188	2	584.334621	1166.65469	0.95885	0.00056029	-4.1447	-0.0024219	-3.1858	-0.0018616	584.3322260709449	145.35	1.4348	145.35	144.74	146.18	0					64	29	4	0	0	0	0.61634	1	17025	17025		40.058	4.9061	1	382200			34619	930	28485	28512	38064	38064					0.0780283699177744
LQWAKGQP	8	Unmodified	_LQWAKGQP_					0	0	0		ENST00000330651.10_1_22:50702225-50702900:-|nuORF	ENST00000330651.10_1_22:50702225-50702900:-|nuORF	ENST00000330651.10_1_22:50702225-50702900:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.2841796875	2	464.255977	926.497401	-0.69677	-0.00032348	3.5389	0.0016429	2.8421	0.0013195	464.258116521204	96.089	0.45558	93.663	93.457	93.913	-2.4256					12	8	2	0	0	0	0.028476	1	8450	8450		31.955	0	1	21511			34620	10435	28486	28513	38065	38065					0.031212219629082938
LQWLGRTKRRT	11	Unmodified	_LQWLGRTKRRT_					0	0	0			REV__ENST00000372706.5_1_1:40942921-40943431:+|nuORF	REV__ENST00000372706.5_1_1:40942921-40943431:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	472.2824401855469	3	472.28451	1413.8317	-4.9212	-0.0023242	2.9946	0.0014143	-1.9266	-0.0009099	472.28593650401154	158.64	2.575	158.42	157.5	160.08	-0.22696					106	62	3	0	0	0	0.72516	1	16127	16127		13.508	3.404	1	56212	+		34621	25010	28487	28514	38066	38066					0.14133730385242416
LQWLGRTKRRT	11	Unmodified	_LQWLGRTKRRT_					0	0	0			REV__ENST00000372706.5_1_1:40942921-40943431:+|nuORF	REV__ENST00000372706.5_1_1:40942921-40943431:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	472.28240966796875	3	472.28451	1413.8317	-6.0448	-0.0028549	4.4561	0.0021045	-1.5887	-0.00075032	472.28675973301637	159.08	3.3809	157.81	156.71	160.09	-1.267					177	72	4	0	0	0	0.72545	1	13671	13671		9.6461	0.43434	1	110830	+		34622	25010	28487	28514	38067	38067					0.14133730385242416
LQWLRRWLRFL	11	Unmodified	_LQWLRRWLRFL_					0	0	0		ENST00000341418.9_1_15:68114320-68117168:+|nuORF	ENST00000341418.9_1_15:68114320-68117168:+|nuORF	ENST00000341418.9_1_15:68114320-68117168:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2796020507812	3	529.652533	1585.93577	0.0098915	5.239E-06	2.3262	0.0012321	2.3361	0.0012373	529.6535957725123	31.48	0.44614	31.48	31.311	31.757	0					21	8	4	0	0	0	0.02656	1	1322	1322		0.3405	0	1	134180			34623	10566	28488	28515	38068	38068					0.16624057212766274
LQWQRAAR	8	Unmodified	_LQWQRAAR_					0	0	0			REV__ENSG00000175602|ENST00000312579|CCDC85B	REV__ENSG00000175602|ENST00000312579|CCDC85B	MULTI-SECPEP	OvCa9_classI_Rep3	3	514.8102416992188	2	514.79105	1027.56755	0.3332	0.00017153	2.3774	0.0012239	2.7106	0.0013954	514.7920794514786	114.65	0.78947	113.59	113.35	114.14	-1.055					25	15	3	0	0	0	0.028476	1	8490	8490		26.796	15.285	1	33814	+		34624	21908	28489	28516	38069	38069					0.054865203513600136
LQYEGAECGV	10	Unmodified	_LQYEGAECGV_					0	0	0		ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.7789916992188	2	534.736957	1067.45936	0.37991	0.00020315	-1.8006	-0.00096282	-1.4206	-0.00075967	534.7371874778223	71.877	0.70428	71.877	71.629	72.333	0					35	16	3	0	0	0	0.026681	1	7006	7006		44.377	0	1	777590			34625	2245	28490	28517	38070	38070					-0.07167076804739736
LQYICLYL	8	Unmodified	_LQYICLYL_					0	0	0		ENSG00000065308|ENST00000182527|TRAM2	ENSG00000065308|ENST00000182527|TRAM2	ENSG00000065308|ENST00000182527|TRAM2	MULTI-MSMS	OvCa99_classI_Rep5	1	514.7803955078125	2	514.777896	1027.54124	-0.25145	-0.00012944	3.7979	0.0019551	3.5464	0.0018256	514.7797736486409	69.205	1.2722	69.205	68.858	70.13	0					74	30	5	0	0	0	0.56113	1	6581	6581		71.378	2.5911	1	11599000			34626	1320	28491	28518	38071	38071					0.028570703449986468
LQYLKETE	8	Unmodified	_LQYLKETE_					0	0	0			REV__nc|ENSG00000176623|Q96DB5-3|RMDN1	REV__nc|ENSG00000176623|Q96DB5-3|RMDN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.7996520996094	2	512.27149	1022.52843	2.2821	0.0011691	-0.087745	-4.4949E-05	2.1944	0.0011241	512.2712112952677	80.064	0.44312	80.064	79.87	80.314	0					14	10	2	0	0	0	0.028476	1	8189	8189		35.618	1.4457	1	370610	+		34627	21959	28492	28519	38072	38072					0.018063304864767815
LQYLKETE	8	Unmodified	_LQYLKETE_					0	0	0			REV__nc|ENSG00000176623|Q96DB5-3|RMDN1	REV__nc|ENSG00000176623|Q96DB5-3|RMDN1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	512.27149	1022.52843	-0.61744	-0.0003163	0.01409	7.2178E-06	-0.60335	-0.00030908	512.2712926866437	81.94	0.85023	79.643	79.385	80.235	-2.2963	-0.10165	1.2174E-05	NaN	35.618	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146060	+		34628	21959	28492	28519							0.018063304864767815
LQYLKETE	8	Unmodified	_LQYLKETE_					0	0	0			REV__nc|ENSG00000176623|Q96DB5-3|RMDN1	REV__nc|ENSG00000176623|Q96DB5-3|RMDN1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	512.27149	1022.52843	-0.77133	-0.00039513	-1.199	-0.00061419	-1.9703	-0.0010093	512.2717880108997	82.282	0.58572	79.599	79.393	79.979	-2.6829	-0.14569	-0.0012306	NaN	35.618	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118950	+		34629	21959	28492	28519							0.018063304864767815
LQYLNFSTII	10	Unmodified	_LQYLNFSTII_					0	0	0		ENST00000554277.5_1_14:21487301-21489989:-|nuORF;ENST00000553741.5_1_14:21488585-21492212:-|nuORF;nc|ENSG00000165795|Q9UN36-4|NDRG2;nc|ENSG00000165795|Q9UN36-5|NDRG2;nc|ENSG00000165795|Q9UN36-2|NDRG2;nc|ENSG00000165795|Q9UN36-3|NDRG2;nc|ENSG00000165795|Q9UN36-6|NDRG2;ENSG00000165795|ENST00000556147|NDRG2	ENST00000554277.5_1_14:21487301-21489989:-|nuORF	ENST00000554277.5_1_14:21487301-21489989:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.2231140136719	3	404.560535	1210.65977	0.53887	0.00021801	-3.7186	-0.0015044	-3.1797	-0.0012864	404.5590454477761	69.691	0.41085	69.691	69.552	69.962	0					16	9	2	0	0	0	0.026975	1	6632	6632		25.126	0	1	421680			34630	6599	28493	28520	38073	38073					0.06287140854396966
LQYWRYFARKK	11	Unmodified	_LQYWRYFARKK_					0	0	0			REV__nc|ENSG00000147421|Q6NT76-3|HMBOX1	REV__nc|ENSG00000147421|Q6NT76-3|HMBOX1	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.7830200195312	3	520.292894	1557.85685	0.22954	0.00011943	0.8654	0.00045026	1.0949	0.00056969	520.2932221526067	31.733	0.79122	29.023	28.838	29.63	-2.7097					39	15	4	0	0	0	0.026448	1	982	982		13.508	7.5069	1	60458	+		34631	20063	28494	28521	38074	38074					0.10023785187809153
LQYYCALN	8	Unmodified	_LQYYCALN_					0	0	0		ENST00000547809.5_1_12:105570964-105626916:-|nuORF;ENST00000549974.5_1_12:105593149-105601775:-|nuORF;ENST00000549573.5_1_12:105591633-105601793:-|nuORF;nc|ENSG00000136044|Q8NEU8-2|APPL2;ENSG00000136044|ENST00000258530|APPL2;nc|ENSG00000136044|Q8NEU8-3|APPL2	ENST00000547809.5_1_12:105570964-105626916:-|nuORF;nc|ENSG00000136044|Q8NEU8-2|APPL2	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.27783203125	2	494.233853	986.453153	2.0543	0.0010153	3.313	0.0016374	5.3673	0.0026527	494.2354127907578	76.279	0.44203	76.279	76.158	76.6	0					14	10	2	0	0	0	0.028476	1	7678	7678		25.45	0	1	128840			34632	13554;4450	28495	28522	38075	38075					-0.04061550245614853
LRAAGGPGLRR	11	Unmodified	_LRAAGGPGLRR_					0	0	0			REV__ENSG00000110811|ENST00000290510|P3H3	REV__ENSG00000110811|ENST00000290510|P3H3	MULTI-MSMS	OvCa9_classI_Rep2	2	562.342529296875	2	562.343981	1122.67341	-1.142	-0.00064221	-0.23342	-0.00013126	-1.3754	-0.00077347	562.3438081477608	141.84	4.7959	141.62	140.24	145.03	-0.22697					133	96	2	0	0	0	0.72473	1	14352	14352		19.104	0	1	113870	+		34633	18004	28496	28523	38076	38076					0.11697856196838075
LRAAPTAL	8	Unmodified	_LRAAPTAL_					0	0	0		nc|ENSG00000284723|Q8NH09|OR8S1	nc|ENSG00000284723|Q8NH09|OR8S1	nc|ENSG00000284723|Q8NH09|OR8S1	MULTI-MSMS	OvCa9_classI_Rep2	2	406.7529296875	2	406.75307	811.491587	0.7718	0.00031393	-0.80042	-0.00032557	-0.028618	-1.164E-05	406.7526534816959	74.321	1.5667	72.35	71.587	73.154	-1.9711					79	29	3	0	0	0	0.56195	1	6091	6091		71.296	5.4925	1	298120			34634	15379	28497	28524	38077	38077					0.07830123451208237
LRADIRVAF	9	Unmodified	_LRADIRVAF_					0	0	0		tr|A0A7D6W402|A0A7D6W402_9CLOTFlotillinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11670PE=4SV=1	tr|A0A7D6W402|A0A7D6W402_9CLOTFlotillinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11670PE=4SV=1	tr|A0A7D6W402|A0A7D6W402_9CLOTFlotillinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11670PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	530.8165893554688	2	530.816733	1059.61891	0.30148	0.00016003	-0.49755	-0.00026411	-0.19606	-0.00010407	530.816354509631	72.1	2.7704	69.497	69.18	71.951	-2.6023					121	55	4	0	0	0	0.48047	1	3403	3403		44.377	0.26039	1	935120			34635	35465	28498	28525	38078	38078					0.091488443254093
LRADSYHVP	9	Unmodified	_LRADSYHVP_					0	0	0			REV__ENST00000357385.7_1_17:79857297-79857938:+|nuORF	REV__ENST00000357385.7_1_17:79857297-79857938:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.319091796875	2	529.274898	1056.53524	-0.19958	-0.00010563	4.2195	0.0022333	4.02	0.0021277	529.2769559433304	71.17	0.86786	71.17	70.761	71.629	0					46	21	3	0	0	0	0.027343	1	6875	6875		79.451	0	1	3871100	+		34636	24783	28499	28526	38079	38079					0.009236881576953238
LRAGAAPTLG	10	Unmodified	_LRAGAAPTLG_					0	0	0		nc|ENSG00000224940|C9JH25-2|PRRT4;nc|ENSG00000224940|C9JH25-3|PRRT4;ENSG00000224940|ENST00000446477|PRRT4	nc|ENSG00000224940|C9JH25-2|PRRT4	nc|ENSG00000224940|C9JH25-2|PRRT4	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.77581787109375	2	463.774534	925.534515	-0.37205	-0.00017255	-0.33539	-0.00015555	-0.70744	-0.00032809	463.7743719429859	78.051	2.3369	75.235	74.536	76.873	-2.8165					87	48	3	0	0	0	0.3976	1	6277	6277		68.787	4.5796	1	1890600			34637	9258	28500	28527	38080	38080					0.06876893508660942
LRAGPGKRVSH	11	Unmodified	_LRAGPGKRVSH_					0	0	0		ENST00000431601.5_1_3:39148536-39148707:-|nuORF	ENST00000431601.5_1_3:39148536-39148707:-|nuORF	ENST00000431601.5_1_3:39148536-39148707:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	589.350830078125	2	589.349263	1176.68397	0.83977	0.00049492	0.80175	0.00047251	1.6415	0.00096743	589.3496588808903	87.347	1.5748	85.916	85.593	87.168	-1.4311					104	31	5	0	0	0	0.31995	1	7644	7644		66.962	3.4281	1	1092400			34638	11802	28501	28528	38081	38081					0.10269838851286295
LRAIANKPS	9	Unmodified	_LRAIANKPS_					0	0	0		nc|ENSG00000124749|Q96P44-3|COL21A1;ENSG00000124749|ENST00000244728|COL21A1	nc|ENSG00000124749|Q96P44-3|COL21A1	nc|ENSG00000124749|Q96P44-3|COL21A1	MULTI-MSMS	OvCa99_classI_Rep5	1	485.2929382324219	2	485.295633	968.576714	-0.75569	-0.00036673	0.56768	0.00027549	-0.18801	-9.1243E-05	485.2957256616435	43.457	0.63909	43.457	43.27	43.909	0					30	14	3	0	0	0	0.33652	1	2873	2873		58.782	3.2778	1	1111500			34639	3676	28502	28529	38082	38082					0.09116868917044485
LRAIIAFFFL	10	Unmodified	_LRAIIAFFFL_					0	0	0		tr|A0A553SHS7|A0A553SHS7_NIACIDUF421domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13540PE=3SV=1	tr|A0A553SHS7|A0A553SHS7_NIACIDUF421domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13540PE=3SV=1	tr|A0A553SHS7|A0A553SHS7_NIACIDUF421domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13540PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.21942138671875	3	404.249743	1209.7274	2.6978	0.0010906	0.43718	0.00017673	3.1349	0.0012673	404.2504831004994	90.741	0.24232	90.741	90.656	90.899	0					8	5	2	0	0	0	0.02706	1	9743	9743		23.523	3.4922	1	109760			34640	33306	28503	28530	38083	38083					0.13092635575844724
LRAIQFIT	8	Unmodified	_LRAIQFIT_					0	0	0			REV__nc|ENSG00000178522|Q9NP70-2|AMBN	REV__nc|ENSG00000178522|Q9NP70-2|AMBN	MULTI-MSMS	OvCa9_classI_Rep3	3	481.2958984375	2	481.295102	960.575651	-1.2517	-0.00060245	0.015584	7.5006E-06	-1.2362	-0.00059495	481.2950148812796	92.776	1.375	90.814	90.56	91.935	-1.9617					73	27	4	0	0	0	0.71369	1	5923	5923		40.573	1.7665	1	702020	+		34641	22062	28504	28531	38084	38084					0.09378654548117993
LRAKKSEI	8	Unmodified	_LRAKKSEI_					0	0	0			REV__tr|A0A553SRN1|A0A553SRN1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01315PE=4SV=1	REV__tr|A0A553SRN1|A0A553SRN1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01315PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.2445373535156	2	472.798009	943.581465	-0.19473	-9.2068E-05	-0.25127	-0.0001188	-0.446	-0.00021087	472.7978699272897	54.128	0.56307	50.881	50.671	51.234	-3.2474					17	10	2	0	0	0	0.028476	1	3338	3338		19.36	0	1	23839	+		34642	30750	28505	28532	38085	38085					0.10741753059812709
LRAKVAAH	8	Unmodified	_LRAKVAAH_					0	0	0		ENST00000359551.6_1_8:145158926-145159115:-|nuORF;ENST00000534242.5_1_8:145157986-145159115:-|nuORF	ENST00000359551.6_1_8:145158926-145159115:-|nuORF	ENST00000359551.6_1_8:145158926-145159115:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	433.8848571777344	2	433.271961	864.52937	0.59319	0.00025701	-0.644	-0.00027903	-0.050813	-2.2016E-05	433.2717225282277	21.483	0.81119	20.144	19.864	20.675	-1.3386					21	15	2	0	0	0	0.028476	1	228	228		26.796	0	1	16328			34643	10754	28506	28533	38086	38086					0.09168634436696266
LRALAAECRLL	11	Carbamidomethyl (C)	_LRALAAEC(Carbamidomethyl (C))RLL_	LRALAAEC(1)RLL		LRALAAEC(85)RLL		0	1	0			REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4	MULTI-MSMS	OvCa9_classI_Rep3	3	643.3744506835938	2	643.374089	1284.73363	-1.2703	-0.00081728	-2.1913	-0.0014098	-3.4616	-0.0022271	643.3726132601269	91.871	1.6827	89.847	89.534	91.216	-2.0241					93	34	5	0	0	0	0.16138	1	5789	5789		85.161	8.9911	1	1255100	+		34644	21744	28507	28534	38087	38087	243				0.10264785745062
LRALLGAVH	9	Unmodified	_LRALLGAVH_					0	0	0			REV__nc|ENSG00000196730|P53355-4|DAPK1	REV__nc|ENSG00000196730|P53355-4|DAPK1	MULTI-MSMS	OvCa9_classI_Rep2	2	475.2995910644531	2	475.300719	948.586885	0.83712	0.00039788	-1.305	-0.00062029	-0.46792	-0.0002224	475.30006565058653	65.392	2.5484	62.696	62.21	64.758	-2.6958					145	50	5	0	0	0	0.57242	1	5037	5037		35.201	4.6971	1	2264200	+		34645	22860	28508	28535	38088	38088					0.11053476642280202
LRALSAIK	8	Unmodified	_LRALSAIK_					0	0	0		tr|A0A7D6VT26|A0A7D6VT26_9CLOTFormateacetyltransferaseOS=ClostridiumintestinaleOX=36845GN=pflBPE=3SV=1	tr|A0A7D6VT26|A0A7D6VT26_9CLOTFormateacetyltransferaseOS=ClostridiumintestinaleOX=36845GN=pflBPE=3SV=1	tr|A0A7D6VT26|A0A7D6VT26_9CLOTFormateacetyltransferaseOS=ClostridiumintestinaleOX=36845GN=pflBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.2920837402344	2	436.28982	870.565087	2.865	0.00125	1.6954	0.00073969	4.5604	0.0019896	436.29039727042573	135.9	2.0052	134.35	134.01	136.01	-1.5437					90	40	3	0	0	0	0.73766	1	13201	13201		32.812	1.2826	1	94245			34646	35083	28509	28536	38089	38089					0.12462671893695187
LRANDDSI	8	Unmodified	_LRANDDSI_					0	0	0			REV__ENST00000576949.1_1_17:7133875-7137617:-|nuORF	REV__ENST00000576949.1_1_17:7133875-7137617:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	452.2301940917969	2	452.230156	902.445759	-0.28859	-0.00013051	-0.00085487	-3.866E-07	-0.28945	-0.0001309	452.23011189825104	43.096	1.5922	40.089	39.801	41.393	-3.0074					56	30	2	0	0	0	0.34187	1	2047	2047		99.375	0	1	1124600	+		34647	16387	28510	28537	38090	38090					-0.009365665216591879
LRANFPLL	8	Unmodified	_LRANFPLL_					0	0	0		tr|A0A553SNR6|A0A553SNR6_NIACISporegernimationproteinKCOS=NialliacirculansOX=1397GN=CEQ21_24850PE=3SV=1	tr|A0A553SNR6|A0A553SNR6_NIACISporegernimationproteinKCOS=NialliacirculansOX=1397GN=CEQ21_24850PE=3SV=1	tr|A0A553SNR6|A0A553SNR6_NIACISporegernimationproteinKCOS=NialliacirculansOX=1397GN=CEQ21_24850PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	472.2892150878906	2	472.28982	942.565087	-0.46632	-0.00022024	-0.40527	-0.00019141	-0.87159	-0.00041164	472.28947149768123	98.344	1.833	97.451	97.168	99.001	-0.89305					84	36	4	0	0	0	0.65582	1	8927	8927		52.299	0.96372	1	571750			34648	33950	28511	28538	38091	38091					0.09150671893701201
LRAPAEMPPRP	11	Unmodified	_LRAPAEMPPRP_					0	0	0			REV__ENST00000234091.8_1_2:8822018-8822156:+|nuORF	REV__ENST00000234091.8_1_2:8822018-8822156:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.7044372558594	3	412.229014	1233.66521	1.0032	0.00041357	2.4518	0.0010107	3.455	0.0014243	412.22998588574677	31.242	0.38402	31.242	31.076	31.46	0					15	7	3	0	0	0	0.025722	1	1267	1267		41.08	22.549	1	67334	+		34649	23800	28512	28539	38092	38092					0.057725411651972536
LRAPALLPL	9	Unmodified	_LRAPALLPL_					0	0	0		nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	MULTI-MSMS	OvCa9_classI_Rep3	3	482.32208251953125	2	482.32112	962.627687	0.84383	0.000407	-1.2403	-0.00059824	-0.39651	-0.00019125	482.32039973806343	113.45	1.7723	112.37	112.01	113.78	-1.0753					105	34	5	0	0	0	0.44294	2	8339	8339;8366		47.916	0	1	798060			34650	15352	28513	28540	38093;38094	38093					0.14487817961901328
LRAPALLPL	9	Unmodified	_LRAPALLPL_					0	0	0		nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.3207702636719	2	482.32112	962.627687	0.43906	0.00021177	-0.84183	-0.00040603	-0.40277	-0.00019426	482.32056847374173	113.85	1.8701	112.4	112.05	113.92	-1.4461					104	36	5	0	0	0	0.27546	2	10588	10588;10614		65.803	7.9919	1	932630			34651	15352	28513	28540	38095;38096	38095					0.14487817961901328
LRAPALLPLL	10	Unmodified	_LRAPALLPLL_					0	0	0		nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	MULTI-MSMS	OvCa9_classI_Rep2	2	538.8628540039062	2	538.863152	1075.71175	-0.23326	-0.0001257	-0.99858	-0.0005381	-1.2318	-0.00066379	538.862877379651	131.84	7.1203	131.62	131.3	138.42	-0.22697					401	145	6	0	0	0	0.43592	4	13285	13271;13285;13573;13702		63.306	0	1	12803000			34652	15352	28514	28541	38097;38098;38099;38100	38098					0.17692349058802392
LRAPALLPLL	10	Unmodified	_LRAPALLPLL_					0	0	0		nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	MULTI-MSMS	OvCa9_classI_Rep3	3	538.8629760742188	2	538.863152	1075.71175	0.50313	0.00027112	-1.3946	-0.0007515	-0.89148	-0.00048038	538.8625358740957	133.13	11.263	132	131.63	142.9	-1.1249					494	228	5	0	0	0	0.22395	5	10730	10730;10760;11044;11199;11266		90.777	1.647	1	10229000			34653	15352	28514	28541	38101;38102;38103;38104;38105	38101					0.17692349058802392
LRAPALLPLL	10	Unmodified	_LRAPALLPLL_					0	0	0		nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.862060546875	2	538.863152	1075.71175	2.6703	0.0014389	-4.1829	-0.002254	-1.5125	-0.00081505	538.8612720845362	133.45	7.6689	131.93	131.41	139.08	-1.5257					434	157	6	0	0	0	0.65434	1	13244	13244		35.618	6.4687	1	17348000			34654	15352	28514	28541	38106	38106					0.17692349058802392
LRAPALLPLL	10	Unmodified	_LRAPALLPLL_					0	0	0		nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	MSMS	OvCa9_classI_Rep4_	4	538.8646850585938	2	538.863152	1075.71175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.4	1	136.87	136.37	137.37	-1.5284								0	0	0	0.14592	1	13472	13472		16.473	0.83134	1				34655	15352	28514	28541	38107	38107					0.17692349058802392
LRAPALLPLL	10	Unmodified	_LRAPALLPLL_					0	0	0		nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	MSMS	OvCa9_classI_Rep4_	4	538.8631591796875	2	538.863152	1075.71175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.54	1	137.01	136.51	137.51	-1.5284								0	0	0	0.15504	1	13489	13489		44.117	0	1				34656	15352	28514	28541	38108	38108					0.17692349058802392
LRAPALLPLLL	11	Unmodified	_LRAPALLPLLL_					0	0	0		nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	MULTI-MSMS	OvCa9_classI_Rep2	2	595.4058837890625	2	595.405184	1188.79581	-3.2474	-0.0019335	3.1968	0.0019034	-0.05051	-3.0074E-05	595.4069549535949	148.18	1.6013	147.95	147.62	149.22	-0.22697					84	31	4	0	0	0	0.56722	1	14990	14990		47.657	6.8792	1	246660			34657	15352	28515	28542	38109	38109					0.20896880155714825
LRAPALLPLLL	11	Unmodified	_LRAPALLPLLL_					0	0	0		nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	MULTI-MSMS	OvCa9_classI_Rep4_	4	595.4050903320312	2	595.405184	1188.79581	-2.2324	-0.0013292	2.261	0.0013462	0.028627	1.7045E-05	595.4064272340376	149.99	1.8022	148.55	148.12	149.93	-1.4344					91	39	4	0	0	0	0.26031	2	14796	14796;14848		71.877	7.6702	1	315630			34658	15352	28515	28542	38110;38111	38110					0.20896880155714825
LRAPAPELLPA	11	Unmodified	_LRAPAPELLPA_					0	0	0		ENSG00000182173|ENST00000333213|TSEN54	ENSG00000182173|ENST00000333213|TSEN54	ENSG00000182173|ENST00000333213|TSEN54	MULTI-MSMS	OvCa9_classI_Rep4_	4	574.3440551757812	2	574.345323	1146.67609	-0.89277	-0.00051276	-0.39225	-0.00022529	-1.285	-0.00073805	574.3449586362831	101.45	2.4722	99.179	98.03	100.5	-2.2665					104	48	3	0	0	0	0.69081	1	9198	9198		32.812	1.1781	1	675430			34659	7977	28516	28543	38112	38112					0.10862266811136578
LRAPLTPLKG	10	Unmodified	_LRAPLTPLKG_					0	0	0			REV__nc|ENSG00000151962|Q8TBY0-2|RBM46	REV__nc|ENSG00000151962|Q8TBY0-2|RBM46	MULTI-MSMS	OvCa9_classI_Rep2	2	533.3403930664062	2	533.342584	1064.67061	-5.4005	-0.0028803	1.293	0.00068962	-4.1075	-0.0021907	533.3431631989303	156.44	1.0857	156.21	155.92	157	-0.22696					71	26	4	0	0	0	0.82648	1	15923	15923		15.642	0	1	260540	+		34660	20266	28517	28544	38113	38113					0.1408658801931324
LRAPQPHLPPL	11	Unmodified	_LRAPQPHLPPL_					0	0	0		ENST00000479202.5_1_21:46306285-46309037:-|nuORF	ENST00000479202.5_1_21:46306285-46309037:-|nuORF	ENST00000479202.5_1_21:46306285-46309037:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8687744140625	2	619.87204	1237.72953	-3.8587	-0.0023919	-0.31006	-0.00019219	-4.1687	-0.0025841	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.72459	1	15123	15123		20.947	0	1	492670			34661	12503	28518	28545	38114	38114					0.1201706431365892
LRAQKYIDL	9	Unmodified	_LRAQKYIDL_					0	0	0		nc|ENSG00000134028|O15204-2|ADAMDEC1;ENSG00000134028|ENST00000256412|ADAMDEC1	nc|ENSG00000134028|O15204-2|ADAMDEC1	nc|ENSG00000134028|O15204-2|ADAMDEC1	MULTI-MSMS	OvCa99_classI_Rep5	1	560.3284301757812	2	560.329673	1118.64479	2.7113	0.0015192	-2.2854	-0.0012806	0.42595	0.00023867	560.3293901112767	110.58	0.93267	110.58	110.22	111.16	0					47	20	3	0	0	0	0.42676	1	12564	12564		49.442	1.5259	1	686710			34662	4252	28519	28546	38115	38115					0.09021693777026485
LRARLRAIL	9	Unmodified	_LRARLRAIL_					0	0	0			REV__ENST00000510267.5_2_4:2749659-2758016:-|nuORF	REV__ENST00000510267.5_2_4:2749659-2758016:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	540.7642211914062	2	541.369467	1080.72438	-1.1249	-0.00060901	2.7613	0.0014949	1.6364	0.0008859	541.3707376251206	77.12	1.196	75.331	74.741	75.937	-1.7894					47	22	3	0	0	0	0.027462	1	6449	6449		27.882	0	1	48628	+		34663	21414	28520	28547	38116	38116					0.18724805241708964
LRASTLLVI	9	Unmodified	_LRASTLLVI_					0	0	0			REV__ENST00000295736.9_1_3:27463260-27465574:-|nuORF	REV__ENST00000295736.9_1_3:27463260-27465574:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	493.3222961425781	2	493.32386	984.633166	0.54027	0.00026653	-1.8183	-0.000897	-1.278	-0.00063047	493.3229865794195	78.475	7.726	76.735	75.777	83.503	-1.7398					408	152	5	0	0	0	0.047062	1	6645	6645		120.62	15.874	1	9096900	+		34664	24194	28521	28548	38117	38117					0.1402349675371397
LRASTLLVI	9	Unmodified	_LRASTLLVI_					0	0	0			REV__ENST00000295736.9_1_3:27463260-27465574:-|nuORF	REV__ENST00000295736.9_1_3:27463260-27465574:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	493.3246154785156	2	493.32386	984.633166	-0.24597	-0.00012134	-0.90931	-0.00044858	-1.1553	-0.00056992	493.3234503328217	78.921	7.0035	76.581	76.162	83.165	-2.3399					348	141	5	0	0	0	0.026923	1	4376	4376		138.83	0.58327	1	11737000	+		34665	24194	28521	28548	38118	38118					0.1402349675371397
LRASTLLVI	9	Unmodified	_LRASTLLVI_					0	0	0			REV__ENST00000295736.9_1_3:27463260-27465574:-|nuORF	REV__ENST00000295736.9_1_3:27463260-27465574:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.32464599609375	2	493.32386	984.633166	-0.22717	-0.00011207	-1.1978	-0.0005909	-1.425	-0.00070297	493.3232853680076	79.478	3.9593	76.727	75.853	79.812	-2.7514					254	81	5	0	0	0	0.14998	1	6622	6622		84.916	10.66	1	11719000	+		34666	24194	28521	28548	38119	38119					0.1402349675371397
LRASVELLDEV	11	Unmodified	_LRASVELLDEV_					0	0	0		ENST00000603907.1_1_19:35514230-35514568:+|nuORF	ENST00000603907.1_1_19:35514230-35514568:+|nuORF	ENST00000603907.1_1_19:35514230-35514568:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	622.3464965820312	2	622.34826	1242.68197	1.3021	0.00081034	-1.4018	-0.00087242	-0.099761	-6.2086E-05	622.3472573537882	119.23	1.2864	118.2	117.83	119.12	-1.0271					70	25	4	0	0	0	0.5804	1	9031	9031		46.457	1.4346	1	444560			34667	14259	28522	28549	38120	38120					0.07033320532150356
LRAVSTGL	8	Unmodified	_LRAVSTGL_					0	0	0		CUL2|p.R669Efs*16|1|0.13|ENSG00000108094|chr10:35011950-35011950|A/-|frameshift_variant;ENSG00000108094|ENST00000374749|CUL2;nc|ENSG00000108094|Q13617-2|CUL2	CUL2|p.R669Efs*16|1|0.13|ENSG00000108094|chr10:35011950-35011950|A/-|frameshift_variant	CUL2|p.R669Efs*16|1|0.13|ENSG00000108094|chr10:35011950-35011950|A/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	409.5863342285156	2	408.750527	815.486502	0.93073	0.00038044	-0.48483	-0.00019817	0.4459	0.00018226	408.75023250607603	35.497	0.59915	35.497	35.293	35.892	0					16	12	2	0	0	0	0.028476	1	1770	1770		17.365	10.629	1	57780			34668	699	28523	28550	38121	38121					0.07137819588615457
LRAVWLQE	8	Unmodified	_LRAVWLQE_					0	0	0		ENST00000333677.6_1_5:149012126-149012222:+|nuORF	ENST00000333677.6_1_5:149012126-149012222:+|nuORF	ENST00000333677.6_1_5:149012126-149012222:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7876281738281	2	507.790184	1013.56581	-0.71965	-0.00036543	-3.7944	-0.0019267	-4.514	-0.0022922	507.78818211844305	46.857	1.6349	44.147	43.646	45.281	-2.7097					89	32	4	0	0	0	0.73205	1	2844	2844		35.618	5.1146	1	755080			34669	10470	28524	28551	38122	38122					0.059574665427589935
LRAWGRGLRVP	11	Unmodified	_LRAWGRGLRVP_					0	0	0		nc|ENSG00000006015|Q96EN9-2|REX1BD;ENSG00000006015|ENST00000358607|REX1BD;ENST00000598375.5_1_19:18699887-18701110:+|nuORF;ENST00000600997.5_1_19:18699887-18701744:+|nuORF;ENST00000597371.1_1_19:18699887-18702987:+|nuORF	nc|ENSG00000006015|Q96EN9-2|REX1BD	nc|ENSG00000006015|Q96EN9-2|REX1BD	MULTI-MSMS	OvCa9_classI_Rep2	2	640.8898315429688	2	640.888555	1279.76256	-0.17045	-0.00010924	2.3883	0.0015306	2.2179	0.0014214	640.8899760073222	130.96	1.1409	130.73	130.4	131.54	-0.22697					67	22	4	0	0	0	0.68021	1	12917	12917		36.447	8.3653	1	368320			34670	868	28525	28552	38123	38123					0.13386691156347297
LRCLALLSLK	10	Unmodified	_LRCLALLSLK_					0	0	0		ENST00000586944.5_1_19:807712-810823:+|nuORF	ENST00000586944.5_1_19:807712-810823:+|nuORF	ENST00000586944.5_1_19:807712-810823:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	565.3626098632812	2	565.359919	1128.70529	1.1665	0.00065949	4.4697	0.002527	5.6362	0.0031865	565.3622496510778	122.79	1.6628	121.77	121.48	123.14	-1.0286					74	31	4	0	0	0	0.39172	1	9474	9474		69.628	2.134	1	327540			34671	14054	28526	28553	38124	38124					0.1460808783574521
LRCLHLLEC	9	Unmodified	_LRCLHLLEC_					0	0	0			REV__ENSG00000154007|ENST00000284142|ASB17	REV__ENSG00000154007|ENST00000284142|ASB17	MULTI-MSMS	OvCa99_classI_Rep5	1	550.29248046875	2	550.291179	1098.56781	0.35939	0.00019777	3.8572	0.0021226	4.2166	0.0023204	550.2932738676362	160.83	0.95601	160.83	160.35	161.31	0					44	18	3	0	0	0	0.22961	1	18864	18864		71.296	7.9894	1	322980	+		34672	20356	28527	28554	38125	38125					0.02246435964707416
LRCLSTLPP	9	Unmodified	_LRCLSTLPP_					0	0	0		ENST00000522870.5_1_16:67200129-67201037:+|nuORF	ENST00000522870.5_1_16:67200129-67201037:+|nuORF	ENST00000522870.5_1_16:67200129-67201037:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	501.280517578125	2	500.28642	998.558287	-0.88348	-0.00044199	2.9173	0.0014595	2.0338	0.0010175	500.2853497221999	90.233	0.61467	88.153	87.953	88.567	-2.0805					17	11	3	0	0	0	0.027462	1	5579	5579		29.15	0	1	36218			34673	13142	28528	28555	38126	38126					0.05894990950821466
LRCRNMLSQ	9	Unmodified	_LRCRNMLSQ_					0	0	0		nc|ENSG00000129221|Q9NZN9-3|AIPL1;nc|ENSG00000129221|Q9NZN9-2|AIPL1;nc|ENSG00000129221|Q9NZN9-5|AIPL1;nc|ENSG00000129221|Q9NZN9-4|AIPL1;ENSG00000129221|ENST00000381129|AIPL1	nc|ENSG00000129221|Q9NZN9-3|AIPL1	nc|ENSG00000129221|Q9NZN9-3|AIPL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.8331909179688	2	560.789335	1119.56412	-0.4796	-0.00026896	4.114	0.0023071	3.6344	0.0020382	560.7913500331402	103.66	0.34007	103.66	103.47	103.81	0					11	7	2	0	0	0	0.027462	1	11597	11597		27.882	0	1	391770			34674	3925	28529	28556	38127	38127					0.00911766190824892
LRCSHRAEI	9	Unmodified	_LRCSHRAEI_					0	0	0		ENST00000570391.5_1_17:79868848-79869142:-|nuORF	ENST00000570391.5_1_17:79868848-79869142:-|nuORF	ENST00000570391.5_1_17:79868848-79869142:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	542.7891845703125	2	542.78765	1083.56075	2.4999	0.0013569	-1.5382	-0.0008349	0.96177	0.00052204	542.7871930585201	121.31	0.74478	121.31	121.06	121.8	0					23	16	2	0	0	0	0.28934	1	13961	13961		64.207	0.901	1	224310			34675	13896	28530	28557	38128	38128					0.022308394084802785
LRCSLARDRL	10	Unmodified	_LRCSLARDRL_					0	0	0			REV__nc|ENSG00000089692|P18627-2|LAG3	REV__nc|ENSG00000089692|P18627-2|LAG3	MSMS	OvCa99_classI_Rep5	1	401.5635070800781	3	401.564396	1201.67136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.391	1	44.391	43.891	44.891	0								0	0	0	0.14967	1	2999	2999		40.058	4.9061	1		+		34676	17211	28531	28558	38129	38129					0.07859059396719204
LRCVRRRRRRH	11	Unmodified	_LRCVRRRRRRH_					0	0	0		ENSG00000184560|ENST00000333870|SPEM2	ENSG00000184560|ENST00000333870|SPEM2	ENSG00000184560|ENST00000333870|SPEM2	MULTI-MSMS	OvCa9_classI_Rep2	2	521.9846801757812	3	521.986915	1562.93892	-4.6275	-0.0024155	1.3885	0.00072478	-3.239	-0.0016907	521.9874825988561	161.37	1.9376	161.15	159.95	161.88	-0.22696					86	38	3	0	0	0	0.72582	1	16431	16431		1.4188	0.18682	1	39687			34677	8169	28532	28559	38130	38130					0.17996421838483911
LRDCLLTIHK	10	Carbamidomethyl (C)	_LRDC(Carbamidomethyl (C))LLTIHK_	LRDC(1)LLTIHK		LRDC(70)LLTIHK		0	1	0			REV__ENST00000495426.1_1_7:33545212-33573811:+|nuORF	REV__ENST00000495426.1_1_7:33545212-33573811:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	634.8578491210938	2	634.860815	1267.70708	-0.66778	-0.00042395	-3.5384	-0.0022464	-4.2062	-0.0026704	634.8585524737888	96.166	2.5594	95.138	94.813	97.373	-1.0281					149	51	5	0	0	0	0.39172	1	8693	8693		69.628	6.0938	1	1938200	+		34678	18602	28533	28560	38131	38131	204				0.08393096853706083
LRDCLLTIHK	10	Carbamidomethyl (C)	_LRDC(Carbamidomethyl (C))LLTIHK_	LRDC(1)LLTIHK		LRDC(65)LLTIHK		0	1	0			REV__ENST00000495426.1_1_7:33545212-33573811:+|nuORF	REV__ENST00000495426.1_1_7:33545212-33573811:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	634.8591918945312	2	634.860815	1267.70708	-0.44071	-0.00027979	-3.5488	-0.002253	-3.9895	-0.0025328	634.8585186686879	97.001	2.7047	95.173	94.827	97.532	-1.8286					162	52	5	0	0	0	0.42082	1	6437	6437		65.465	12.376	1	2573100	+		34679	18602	28533	28560	38132	38132	204				0.08393096853706083
LRDDEAHLQ	9	Unmodified	_LRDDEAHLQ_					0	0	0		ENSG00000113312|ENST00000231238|TTC1	ENSG00000113312|ENST00000231238|TTC1	ENSG00000113312|ENST00000231238|TTC1	MULTI-MSMS	OvCa99_classI_Rep5	1	548.77099609375	2	548.772719	1095.53089	-0.48463	-0.00026595	-4.0988	-0.0022493	-4.5834	-0.0025153	548.7706281168238	29.68	0.29872	29.68	29.536	29.835	0					14	5	4	0	0	0	0.51865	1	1088	1088		40.778	1.5253	1	138500			34680	2964	28534	28561	38133	38133					-0.013058210558483552
LRDDRIQRIYF	11	Unmodified	_LRDDRIQRIYF_					0	0	0		ENST00000263253.8_1_22:41575130-41575280:+|nuORF	ENST00000263253.8_1_22:41575130-41575280:+|nuORF	ENST00000263253.8_1_22:41575130-41575280:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.9436340332031	3	498.944042	1493.8103	0.10419	5.1986E-05	-1.7683	-0.00088228	-1.6641	-0.00083029	498.9431829113185	80.386	6.5904	78.69	78.321	84.911	-1.6951					347	130	6	0	0	0	0.71831	1	6801	6801		23.378	0.81632	1	5429500			34681	9910	28535	28562	38134	38134					0.08314300565871235
LRDLFLATQF	10	Unmodified	_LRDLFLATQF_					0	0	0			REV__ENSG00000142327|ENST00000270357|RNPEPL1	REV__ENSG00000142327|ENST00000270357|RNPEPL1	MULTI-MSMS	OvCa99_classI_Rep5	1	611.8440551757812	2	612.342781	1222.67101	1.2005	0.0007351	-1.7066	-0.001045	-0.50615	-0.00030993	612.341526733892	123.72	1.2769	123.72	123.47	124.74	0					44	15	5	0	0	0	0.5675	1	14287	14287		45.972	1.5951	1	854340	+		34682	19782	28536	28563	38135	38135					0.06857962948515706
LRDMRQRL	8	Unmodified	_LRDMRQRL_					0	0	0			REV__MDN1|p.I5359Kfs*8|1|0.1|ENSG00000112159|chr6:89650154-89650155|-/CATAGCT|frameshift_variant	REV__MDN1|p.I5359Kfs*8|1|0.1|ENSG00000112159|chr6:89650154-89650155|-/CATAGCT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.27294921875	2	544.311292	1086.60803	2.1692	0.0011807	2.5998	0.0014151	4.769	0.0025958	544.3124052134273	84.943	0.70261	84.943	84.55	85.252	0					23	16	2	0	0	0	0.028476	1	8904	8904		71.296	14.575	1	402310	+		34683	18079	28537	28564	38136	38136					0.06819118679482017
LRDRSHIE	8	Unmodified	_LRDRSHIE_					0	0	0		CREBBP-SRL|1|fusion;CREBBP-SRL|2|fusion;ENSG00000185739|ENST00000399609|SRL;nc|ENSG00000185739|Q86TD4-1|SRL	CREBBP-SRL|1|fusion	CREBBP-SRL|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.7418823242188	2	513.277972	1024.54139	0.084028	4.3129E-05	4.315	0.0022148	4.399	0.0022579	513.2800668823567	68.668	1.2307	65.178	64.818	66.048	-3.4902					53	24	3	0	0	0	0.028476	1	5158	5158		63.306	2.3343	1	208910			34684	679	28538	28565	38137	38137					0.030102063892172737
LRDTKKTIQ	9	Unmodified	_LRDTKKTIQ_					0	0	0		ENSG00000161638|ENST00000293379|ITGA5;ENST00000552583.1_1_12:54795558-54795958:-|nuORF;ENST00000552564.5_1_12:54794620-54797174:-|nuORF	ENSG00000161638|ENST00000293379|ITGA5	ENSG00000161638|ENST00000293379|ITGA5	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.8192749023438	2	551.83258	1101.65061	-0.064434	-3.5557E-05	-0.56986	-0.00031447	-0.6343	-0.00035002	551.832156562483	31.832	0.49649	31.832	31.658	32.154	0					17	9	3	0	0	0	0.027462	1	1355	1355		25.574	0	1	181070			34685	6133	28539	28566	38138	38138					0.10384792288709832
LRDTKKTIQ	9	Unmodified	_LRDTKKTIQ_					0	0	0		ENSG00000161638|ENST00000293379|ITGA5;ENST00000552583.1_1_12:54795558-54795958:-|nuORF;ENST00000552564.5_1_12:54794620-54797174:-|nuORF	ENSG00000161638|ENST00000293379|ITGA5	ENSG00000161638|ENST00000293379|ITGA5	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.8359985351562	2	551.83258	1101.65061	-0.20291	-0.00011197	3.4203	0.0018874	3.2174	0.0017755	551.8344006629158	102.04	1.2572	99.84	99.522	100.78	-2.1994					65	23	4	0	0	0	0.10502	1	9183	9183		95.815	2.6719	1	458490			34686	6133	28539	28566	38139	38139					0.10384792288709832
LRDVLGILW	9	Unmodified	_LRDVLGILW_					0	0	0		ENST00000556293.5_1_14:20937683-20940725:+|nuORF	ENST00000556293.5_1_14:20937683-20940725:+|nuORF	ENST00000556293.5_1_14:20937683-20940725:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	542.8289184570312	2	542.829309	1083.64407	2.0146	0.0010936	-2.209	-0.0011991	-0.1944	-0.00010553	542.8278015162069	85.124	0.70179	85.124	84.923	85.624	0					35	16	3	0	0	0	0.34496	1	8929	8929		57.811	3.035	1	2811000			34687	13656	28540	28567	38140	38140					0.10558899127977384
LREAGPYLTL	10	Unmodified	_LREAGPYLTL_					0	0	0			REV__CON__Q6IME9	REV__CON__Q6IME9	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.8880615234375	2	566.821681	1131.62881	1.7563	0.00099548	-3.3753	-0.0019132	-1.619	-0.0009177	566.8206147322988	119.78	0.21855	119.78	119.7	119.92	0					6	4	2	0	0	0	0.027056	1	13759	13759		20.947	0	1	99030	+	+	34688	16219	28541	28568	38141	38141					0.06825987540150891
LREALQRPI	9	Unmodified	_LREALQRPI_					0	0	0			REV__sp|Q6SWA0|UL31_HCMVMProteinUL31OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL31PE=3SV=1	REV__sp|Q6SWA0|UL31_HCMVMProteinUL31OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL31PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	548.3344116210938	2	548.33529	1094.65603	-0.67354	-0.00036933	0.0061222	3.357E-06	-0.66742	-0.00036597	548.3353349433302	49.062	1.6355	46.302	45.879	47.514	-2.7603					116	32	5	0	0	0	0.51865	1	3163	3163		40.778	0.20554	1	2328000	+		34689	29440	28542	28569	38142	38142					0.11248515871170639
LREAPLEEV	9	Unmodified	_LREAPLEEV_					0	0	0			REV__ENSG00000167676|ENST00000301286|PLIN4	REV__ENSG00000167676|ENST00000301286|PLIN4	MULTI-MSMS	OvCa99_classI_Rep5	1	528.293701171875	2	528.290214	1054.56587	2.1433	0.0011323	-0.33444	-0.00017668	1.8089	0.00095561	528.2900671712318	86.911	1.034	86.911	86.594	87.628	0					44	24	3	0	0	0	0.49652	1	9205	9205		42.864	2.0861	1	3371300	+		34690	21299	28543	28570	38143	38143					0.040774217520947786
LREELAVRWPR	11	Unmodified	_LREELAVRWPR_					0	0	0		ENST00000334116.7_2_19:37042871-37064163:-|nuORF	ENST00000334116.7_2_19:37042871-37064163:-|nuORF	ENST00000334116.7_2_19:37042871-37064163:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	475.6080322265625	3	475.608882	1423.80482	0.21695	0.00010318	-1.8011	-0.0008566	-1.5841	-0.00075342	475.6080820872315	80.588	3.0505	78.893	78.222	81.273	-1.6951					178	59	5	0	0	0	0.65267	3	6813	6813;6819;6825		39.873	7.1226	1	4080000			34691	10476	28544	28571	38144;38145;38146	38144					0.10986621774054584
LREELAVRWPR	11	Unmodified	_LREELAVRWPR_					0	0	0		ENST00000334116.7_2_19:37042871-37064163:-|nuORF	ENST00000334116.7_2_19:37042871-37064163:-|nuORF	ENST00000334116.7_2_19:37042871-37064163:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	475.6092529296875	3	475.608882	1423.80482	0.37352	0.00017765	-1.8586	-0.00088397	-1.4851	-0.00070633	475.6080683301692	81.355	3.0767	79.032	78.697	81.774	-2.3226					187	62	5	0	0	0	0.63942	2	4535	4517;4535		41.08	3.5719	1	5738700			34692	10476	28544	28571	38147;38148	38148					0.10986621774054584
LREELDDI	8	Unmodified	_LREELDDI_					0	0	0			REV__nc|ENSG00000143549|P06753-4|TPM3	REV__nc|ENSG00000143549|P06753-4|TPM3	MULTI-MSMS	OvCa99_classI_Rep5	1	501.75994873046875	2	501.758746	1001.50294	0.38604	0.0001937	0.2918	0.00014641	0.67784	0.00034011	501.7587860711282	74.064	0.68584	74.064	73.755	74.441	0					34	17	3	0	0	0	0.64371	1	7314	7314		54.776	1.8396	1	2880300	+		34693	28902	28545	28572	38149	38149					0.0022485596406340846
LREEVHTML	9	Unmodified	_LREEVHTML_					0	0	0		nc|ENSG00000176248|Q9UJX6-2|ANAPC2;ENSG00000176248|ENST00000323927|ANAPC2	nc|ENSG00000176248|Q9UJX6-2|ANAPC2	nc|ENSG00000176248|Q9UJX6-2|ANAPC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.299560546875	2	564.297516	1126.58048	0.9654	0.00054477	3.1452	0.0017748	4.1106	0.0023196	564.2992513368042	123.58	1.2488	122.21	121.9	123.15	-1.3666					37	22	2	0	0	0	0.37135	1	11719	11719		54.776	5.3348	1	161810			34694	7594	28546	28573	38150	38150					0.02225170628594242
LREGPAKQI	9	Unmodified	_LREGPAKQI_					0	0	0			REV__nc|ENSG00000180900|Q14160-2|SCRIB	REV__nc|ENSG00000180900|Q14160-2|SCRIB	MULTI-MSMS	OvCa99_classI_Rep5	1	506.3011474609375	2	506.300916	1010.58728	-0.3322	-0.00016819	-0.36602	-0.00018532	-0.69822	-0.00035351	506.3007450895206	47.746	1.8648	47.746	47.465	49.33	0					95	42	5	0	0	0	0.049969	1	3472	3472		118.74	0	1	13165000	+		34695	22204	28547	28574	38151	38151					0.08240851571463281
LREKLATI	8	Unmodified	_LREKLATI_					0	0	0			REV__ENSG00000135338|ENST00000369846|LCA5	REV__ENSG00000135338|ENST00000369846|LCA5	MULTI-MSMS	OvCa9_classI_Rep2	2	472.29962158203125	2	472.300384	942.586216	-0.049365	-2.3315E-05	0.14851	7.0142E-05	0.099145	4.6826E-05	472.30036581633567	93.11	1.6995	91.942	91.446	93.145	-1.168					62	32	2	0	0	0	0.59904	1	8305	8305		64.207	3.2353	1	187760	+		34696	19277	28548	28575	38152	38152					0.112626372025602
LREKLATI	8	Unmodified	_LREKLATI_					0	0	0			REV__ENSG00000135338|ENST00000369846|LCA5	REV__ENSG00000135338|ENST00000369846|LCA5	MULTI-MATCH	OvCa99_classI_Rep5	1		2	472.300384	942.586216	2.069	0.00097719	-0.033626	-1.5881E-05	2.0354	0.00096131	472.30023034939904	92.039	0.54819	92.039	91.753	92.301	0	-0.0047424	-2.7818E-05	NaN	64.207	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	324970	+		34697	19277	28548	28575							0.112626372025602
LREKLATI	8	Unmodified	_LREKLATI_					0	0	0			REV__ENSG00000135338|ENST00000369846|LCA5	REV__ENSG00000135338|ENST00000369846|LCA5	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	472.300384	942.586216	-0.049365	-2.3315E-05	0.14851	7.0142E-05	0.099145	4.6826E-05	472.30036581633567	93.11	1.6995	91.942	91.446	93.145	-1.168	-0.10153	0.00014423	NaN	64.207	62	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187760	+		34698	19277	28548	28575							0.112626372025602
LREKLATI	8	Unmodified	_LREKLATI_					0	0	0			REV__ENSG00000135338|ENST00000369846|LCA5	REV__ENSG00000135338|ENST00000369846|LCA5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	472.300384	942.586216	-0.24343	-0.00011497	0.31707	0.00014975	0.073638	3.4779E-05	472.30041700940296	93.955	1.6179	91.993	91.526	93.144	-1.9617	-0.050717	0.00030344	NaN	64.207	61	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224980	+		34699	19277	28548	28575							0.112626372025602
LREKLATI	8	Unmodified	_LREKLATI_					0	0	0			REV__ENSG00000135338|ENST00000369846|LCA5	REV__ENSG00000135338|ENST00000369846|LCA5	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	472.300384	942.586216	0.25284	0.00011942	-0.43091	-0.00020352	-0.17807	-8.4103E-05	472.30006800941266	94.669	1.596	92.201	91.666	93.262	-2.4685	0.15699	-0.0004031	NaN	64.207	60	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207620	+		34700	19277	28548	28575							0.112626372025602
LREKLQPT	8	Unmodified	_LREKLQPT_					0	0	0			REV__ENSG00000107854|ENST00000371627|TNKS2	REV__ENSG00000107854|ENST00000371627|TNKS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.8180236816406	2	492.795466	983.57638	-0.15447	-7.6122E-05	-2.9883	-0.0014726	-3.1428	-0.0015487	492.79412031638526	31.005	0.2905	31.005	30.881	31.171	0					12	5	4	0	0	0	0.028476	1	1242	1242		24.203	0	1	67806	+		34701	17861	28549	28576	38153	38153					0.08393449197160407
LRELGEKAHH	10	Unmodified	_LRELGEKAHH_					0	0	0		ZNF142|p.L757Sfs*16|1|0.05|ENSG00000115568|chr2:218644247-218644248|-/AATAAGTGGCATTCATAAAAGCAGA|frameshift_variant;ZNF142|p.S904Tfs*73|1|0.05|ENSG00000115568|chr2:218643805-218643806|GA/-|frameshift_variant;ENST00000433921.5_1_2:219503064-219516433:-|nuORF;nc|ENSG00000115568|P52746|ZNF142;ENSG00000115568|ENST00000411696|ZNF142	ZNF142|p.L757Sfs*16|1|0.05|ENSG00000115568|chr2:218644247-218644248|-/AATAAGTGGCATTCATAAAAGCAGA|frameshift_variant	ZNF142|p.L757Sfs*16|1|0.05|ENSG00000115568|chr2:218644247-218644248|-/AATAAGTGGCATTCATAAAAGCAGA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	595.3053588867188	2	595.325454	1188.63635	-0.20754	-0.00012355	-3.3218	-0.0019775	-3.5293	-0.0021011	595.3226218756082	67.623	0.27589	67.623	67.566	67.842	0					9	6	2	0	0	0	0.026782	1	6335	6335		45.972	3.5761	1	184600			34702	3107	28550	28577	38154	38154					0.04958139860423216
LRELPLLFH	9	Unmodified	_LRELPLLFH_					0	0	0		ENSG00000119777|ENST00000238788|TMEM214;nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENST00000469445.1_1_2:27263203-27263702:+|nuORF	ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.8168334960938	2	569.342584	1136.67061	-0.59443	-0.00033844	-2.2089	-0.0012576	-2.8033	-0.001596	569.3413076604572	28.85	0.34924	28.85	28.638	28.987	0					14	6	3	0	0	0	0.027402	1	984	984		76.774	17.992	1	33203			34703	3394	28551	28578	38155	38155					0.10774588019330622
LRELVLKYR	9	Unmodified	_LRELVLKYR_					0	0	0		nc|ENSG00000029725|Q15276-2|RABEP1;ENSG00000029725|ENST00000537505|RABEP1;ENST00000575475.2_1_17:5185712-5281605:+|nuORF	nc|ENSG00000029725|Q15276-2|RABEP1	nc|ENSG00000029725|Q15276-2|RABEP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	595.3053588867188	2	595.374415	1188.73428	-0.046845	-2.789E-05	0.13754	8.1889E-05	0.090697	5.3999E-05	595.37429290595	67.547	0.39445	67.547	67.408	67.803	0					17	9	2	0	0	0	0.027462	1	6335	6335		37.159	2.9866	1	220750			34704	1063	28552	28579	38156	38156					0.14745948456402402
LRENGDSL	8	Unmodified	_LRENGDSL_					0	0	0		ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENSG00000183486|ENST00000330714|MX2;MX2|p.F652S|1|0.11|ENSG00000183486|chr21:41408040-41408040|T/C|missense_variant;ENST00000398632.3_1_21:42775383-42780157:+|nuORF	ENST00000482953.5_1_21:42762449-42780157:+|nuORF	ENST00000482953.5_1_21:42762449-42780157:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	452.2309265136719	2	452.230156	902.445759	2.7012	0.0012216	-2.6131	-0.0011817	0.088105	3.9844E-05	452.2288477187877	43.095	1.0892	40.386	40.114	41.203	-2.7097					36	21	2	0	0	0	0.45246	1	2370	2370		82.305	0	1	254790			34705	8078	28553	28580	38157	38157					-0.009365665216591879
LRENGDSL	8	Unmodified	_LRENGDSL_					0	0	0		ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENSG00000183486|ENST00000330714|MX2;MX2|p.F652S|1|0.11|ENSG00000183486|chr21:41408040-41408040|T/C|missense_variant;ENST00000398632.3_1_21:42775383-42780157:+|nuORF	ENST00000482953.5_1_21:42762449-42780157:+|nuORF	ENST00000482953.5_1_21:42762449-42780157:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	452.23089599609375	2	452.230156	902.445759	-0.28859	-0.00013051	-0.00085487	-3.866E-07	-0.28945	-0.0001309	452.23011189825104	43.096	1.5922	40.089	39.801	41.393	-3.0074					56	30	2	0	0	0	0.45246	1	2060	2060		82.305	0	1	1124600			34706	8078	28553	28580	38158	38158					-0.009365665216591879
LREPKVHIW	9	Unmodified	_LREPKVHIW_					0	0	0			REV__ENSG00000169155|ENST00000373464|ZBTB43	REV__ENSG00000169155|ENST00000373464|ZBTB43	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3426513671875	2	589.345658	1176.67676	-3.0463	-0.0017953	-1.5159	-0.00089337	-4.5622	-0.0026887	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.69895	1	15108	15108		18.324	0.062328	1	272220	+		34707	21435	28554	28581	38159	38159					0.09549106250847217
LREPPGPALL	10	Unmodified	_LREPPGPALL_					0	0	0			REV__ENST00000531423.1_1_8:145696018-145698106:+|nuORF	REV__ENST00000531423.1_1_8:145696018-145698106:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8164672851562	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.66721	2	13946	13786;13946		34.173	2.6225	1	166960	+		34708	21301	28555	28582	38160;38161	38161					0.09498308748334239
LREQQHRRWRL	11	Unmodified	_LREQQHRRWRL_					0	0	0		MTHFD1L|p.L914Gfs*14|1|0.81|ENSG00000120254|chr6:151037009-151037042|TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA/-|frameshift_variant;ENSG00000120254|ENST00000367321|MTHFD1L	MTHFD1L|p.L914Gfs*14|1|0.81|ENSG00000120254|chr6:151037009-151037042|TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA/-|frameshift_variant	MTHFD1L|p.L914Gfs*14|1|0.81|ENSG00000120254|chr6:151037009-151037042|TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.8187255859375	3	526.634313	1576.88111	-1.9008	-0.001001	2.8021	0.0014757	0.90133	0.00047467	526.6356361298868	62.255	1.3314	59.496	59.187	60.518	-2.7593					55	25	4	0	0	0	0.026497	1	4776	4776		6.001	0.30226	1	114900			34709	3422	28556	28583	38162	38162					0.11574438394063691
LREQQHRRWRL	11	Unmodified	_LREQQHRRWRL_					0	0	0		MTHFD1L|p.L914Gfs*14|1|0.81|ENSG00000120254|chr6:151037009-151037042|TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA/-|frameshift_variant;ENSG00000120254|ENST00000367321|MTHFD1L	MTHFD1L|p.L914Gfs*14|1|0.81|ENSG00000120254|chr6:151037009-151037042|TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA/-|frameshift_variant	MTHFD1L|p.L914Gfs*14|1|0.81|ENSG00000120254|chr6:151037009-151037042|TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	526.634765625	3	526.634313	1576.88111	0.89518	0.00047143	0.35205	0.0001854	1.2472	0.00065683	526.6344674636681	62.939	1.7933	59.905	59.561	61.354	-3.0339					97	35	4	0	0	0	0.7256	1	2307	2307		7.6794	1.6784	1	164120			34710	3422	28556	28583	38163	38163					0.11574438394063691
LRERGPSSH	9	Unmodified	_LRERGPSSH_					0	0	0			REV__ENST00000550383.1_1_17:3594253-3599357:-|nuORF	REV__ENST00000550383.1_1_17:3594253-3599357:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	519.773681640625	2	519.775597	1037.53664	1.2718	0.00066103	-4.4112	-0.0022928	-3.1394	-0.0016318	519.7732287380198	127.54	1.531	127.31	126.99	128.52	-0.23578					82	30	5	0	0	0	0.16562	2	12486	12468;12486		82.241	3.59	1	538520	+		34711	27473	28557	28584	38164;38165	38165					0.019373222464764694
LRERLARL	8	Unmodified	_LRERLARL_					0	0	0			REV__nc|ENSG00000122432|Q5VX52-2|SPATA1	REV__nc|ENSG00000122432|Q5VX52-2|SPATA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.8313598632812	2	513.830175	1025.6458	0.18498	9.5051E-05	-0.76667	-0.00039394	-0.58169	-0.00029889	513.8295446542414	38.39	1.289	35.463	35.057	36.346	-2.9264					52	25	3	0	0	0	0.74229	1	1485	1485		30.504	0	1	126690	+		34712	18596	28558	28585	38166	38166					0.1339995293658376
LRERLARL	8	Unmodified	_LRERLARL_					0	0	0			REV__nc|ENSG00000122432|Q5VX52-2|SPATA1	REV__nc|ENSG00000122432|Q5VX52-2|SPATA1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	513.830175	1025.6458	-1.4321	-0.00073585	0.84124	0.00043225	-0.59086	-0.0003036	513.830405934073	38.288	0.89086	35.578	35.37	36.261	-2.7097	0.057531	0.0012079	NaN	30.504	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63754	+		34713	18596	28558	28585							0.1339995293658376
LRERPRRERRK	11	Unmodified	_LRERPRRERRK_					0	0	0		ENST00000594295.5_1_19:52580327-52588101:-|nuORF	ENST00000594295.5_1_19:52580327-52588101:-|nuORF	ENST00000594295.5_1_19:52580327-52588101:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.3154296875	3	517.985346	1550.93421	1.3669	0.00070803	-2.7918	-0.0014461	-1.4249	-0.0007381	517.9835649013266	125.33	0.77364	125.33	125.17	125.95	0					25	18	2	0	0	0	0.026525	1	14523	14523		3.6191	0	1	146840			34714	14162	28559	28586	38167	38167					0.18077816176696615
LRERRDELST	10	Unmodified	_LRERRDELST_					0	0	0			REV__ENST00000413059.1_1_X:57419910-57420861:-|nuORF	REV__ENST00000413059.1_1_X:57419910-57420861:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	425.56341552734375	3	425.56523	1273.67386	-0.49907	-0.00021239	-4.3549	-0.0018533	-4.8539	-0.0020657	425.5633997861795	69.334	3.5142	66.713	66.068	69.582	-2.6203					206	68	5	0	0	0	0.65826	1	5488	5488		35.178	0.026198	1	1667000	+		34715	25503	28560	28587	38168	38168					0.04797186335349579
LRETIALL	8	Unmodified	_LRETIALL_					0	0	0		ENSG00000155393|ENST00000299192|HEATR3;nc|ENSG00000155393|Q7Z4Q2-2|HEATR3;nc|ENSG00000155393|Q7Z4Q2-3|HEATR3	ENSG00000155393|ENST00000299192|HEATR3	ENSG00000155393|ENST00000299192|HEATR3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.2574157714844	2	464.794935	927.575317	-1.1438	-0.00053163	1.2964	0.00060255	0.15257	7.0915E-05	464.7953193346294	54.293	0.46008	51.046	50.774	51.234	-3.2474					11	8	2	0	0	0	0.028476	1	3359	3359		38.806	0	1	10010			34716	5783	28561	28588	38169	38169					0.10863234828264012
LREVPYPAE	9	Unmodified	_LREVPYPAE_					0	0	0			REV__ENST00000441955.2_2_7:27779753-27779975:-|nuORF	REV__ENST00000441955.2_2_7:27779753-27779975:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.298583984375	2	537.284931	1072.55531	-0.64255	-0.00034523	-4.4533	-0.0023927	-5.0959	-0.0027379	537.283309070552	61.611	0.52728	58.153	57.717	58.244	-3.4577					21	10	3	0	0	0	0.027462	1	4233	4233		32.812	6.1195	1	75698	+		34717	25849	28562	28589	38170	38170					0.021934390976412033
LREYSQQA	8	Unmodified	_LREYSQQA_					0	0	0			REV__nc|ENSG00000137942|Q5T0N5-2|FNBP1L	REV__nc|ENSG00000137942|Q5T0N5-2|FNBP1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.8194885253906	2	497.751256	993.487959	1.8841	0.00093782	-3.0026	-0.0014945	-1.1185	-0.00055671	497.7498256896392	136.63	0.43019	136.63	136.39	136.82	0					11	8	2	0	0	0	0.028476	1	15944	15944		15.642	0	1	52761	+		34718	28879	28563	28590	38171	38171					-0.009045911132830042
LRFAKMKTV	9	Unmodified	_LRFAKMKTV_					0	0	0		ENSG00000162009|ENST00000689027|SSTR5	ENSG00000162009|ENST00000689027|SSTR5	ENSG00000162009|ENST00000689027|SSTR5	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.7717895507812	2	547.331162	1092.64777	0.047774	2.6148E-05	-0.77374	-0.00042349	-0.72597	-0.00039734	547.330449433073	57.513	0.25521	57.513	57.353	57.609	0					8	5	2	0	0	0	0.027462	1	4831	4831		10.265	1.4429	1	206180			34719	6151	28564	28591	38172	38172					0.1051524563017665
LRFAKMKTV	9	Unmodified	_LRFAKMKTV_					0	0	0		ENSG00000162009|ENST00000689027|SSTR5	ENSG00000162009|ENST00000689027|SSTR5	ENSG00000162009|ENST00000689027|SSTR5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	547.331162	1092.64777	-0.76977	-0.00042132	3.2578	0.0017831	2.488	0.0013618	547.332951949311	60.515	0.79517	57.745	57.448	58.243	-2.7702	0.00043049	0.00049776	NaN	19.997	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28234			34720	6151	28564	28591							0.1051524563017665
LRFAKMKTV	9	Unmodified	_LRFAKMKTV_					0	0	0		ENSG00000162009|ENST00000689027|SSTR5	ENSG00000162009|ENST00000689027|SSTR5	ENSG00000162009|ENST00000689027|SSTR5	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	547.331162	1092.64777	-0.1104	-6.0424E-05	2.4869	0.0013612	2.3765	0.0013007	547.3323913693732	61.418	0.85872	57.976	57.633	58.491	-3.4418	0.23126	-0.00034611	NaN	19.997	31	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52574			34721	6151	28564	28591							0.1051524563017665
LRFARSARR	9	Unmodified	_LRFARSARR_					0	0	0			REV__ENST00000549857.1_1_17:6918864-6919026:+|nuORF	REV__ENST00000549857.1_1_17:6918864-6919026:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.81103515625	2	566.844148	1131.67374	0.056935	3.2273E-05	1.961	0.0011116	2.018	0.0011439	566.845244890369	114.18	1.0535	113.12	112.89	113.95	-1.055					37	20	3	0	0	0	0.027462	1	8429	8429		27.882	12.24	1	27253	+		34722	27460	28565	28592	38173	38173					0.11317275916667313
LRFAVATAV	9	Unmodified	_LRFAVATAV_					0	0	0		SLC22A13|p.A193S|1|0.06|ENSG00000172940|chr3:38274698-38274698|G/T|missense_variant;nc|ENSG00000172940|Q9Y226-2|SLC22A13;ENSG00000172940|ENST00000311856|SLC22A13	SLC22A13|p.A193S|1|0.06|ENSG00000172940|chr3:38274698-38274698|G/T|missense_variant	SLC22A13|p.A193S|1|0.06|ENSG00000172940|chr3:38274698-38274698|G/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.2886657714844	2	474.287277	946.560001	2.9498	0.001399	4.2892	0.0020343	7.239	0.0034334	474.28922077273074	129.53	5.9099	128.07	125.62	131.53	-1.4565					195	118	2	0	0	0	0.69403	1	12464	12464		19.997	0.6368	1	37993			34723	7334	28566	28593	38174	38174					0.08458368031085683
LRFFPPLGL	9	Unmodified	_LRFFPPLGL_					0	0	0		L1PA11_dup257|chr1:220255199-220257096:+|1.2080698086480397|0.4810012897383803|1.33|429.0|102|2|anti-sense	L1PA11_dup257|chr1:220255199-220257096:+|1.2080698086480397|0.4810012897383803|1.33|429.0|102|2|anti-sense	L1PA11_dup257|chr1:220255199-220257096:+|1.2080698086480397|0.4810012897383803|1.33|429.0|102|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.294189453125	2	530.32112	1058.62769	0.78713	0.00041743	1.4218	0.00075402	2.2089	0.0011715	530.3213795950431	158.48	0.42099	158.48	158.27	158.69	0					12	8	2	0	0	0	0.027462	1	18590	18590		19.36	0	1	23168			34724	14646	28567	28594	38175	38175					0.1007181796187524
LRFHKVKA	8	Unmodified	_LRFHKVKA_					0	0	0		ENSG00000198844|ENST00000361926|ARHGEF15	ENSG00000198844|ENST00000361926|ARHGEF15	ENSG00000198844|ENST00000361926|ARHGEF15	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.7186279296875	2	499.816536	997.618519	-0.64046	-0.00032011	-2.0074	-0.0010033	-2.6478	-0.0013234	499.8154618753757	39.425	0.25692	39.425	39.332	39.589	0					6	5	2	0	0	0	0.028476	1	2338	2338		35.201	9.7505	1	21142			34725	8888	28568	28595	38176	38176					0.11961469396214852
LRFIQRLYELA	11	Unmodified	_LRFIQRLYELA_					0	0	0			REV__nc|ENSG00000136699|Q9NXE4-5|SMPD4	REV__nc|ENSG00000136699|Q9NXE4-5|SMPD4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.7830810546875	3	474.613633	1420.81907	0.84756	0.00040226	-3.8501	-0.0018273	-3.0026	-0.0014251	474.61160481171186	60.636	0.39862	57.206	57.046	57.444	-3.43					12	7	2	0	0	0	0.026145	1	4121	4121		29.551	10.288	1	13568	+		34726	28875	28569	28596	38177	38177					0.12549274202365268
LRFKQLTF	8	Unmodified	_LRFKQLTF_					0	0	0			REV__ENST00000226725.10_1_4:166160001-166184388:+|nuORF	REV__ENST00000226725.10_1_4:166160001-166184388:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.6656494140625	2	526.816202	1051.61785	0.24941	0.00013139	2.4621	0.0012971	2.7115	0.0014285	526.8174746667315	81.239	0.57903	81.239	80.993	81.572	0					24	13	3	0	0	0	0.028476	1	8340	8340		12.207	0	1	688810	+		34727	23770	28570	28597	38178	38178					0.09410629956482808
LRFMVPLA	8	Unmodified	_LRFMVPLA_					0	0	0		tr|A0A7D6W216|A0A7D6W216_9CLOT3-phosphoshikimate1-carboxyvinyltransferaseOS=ClostridiumintestinaleOX=36845GN=aroAPE=3SV=1	tr|A0A7D6W216|A0A7D6W216_9CLOT3-phosphoshikimate1-carboxyvinyltransferaseOS=ClostridiumintestinaleOX=36845GN=aroAPE=3SV=1	tr|A0A7D6W216|A0A7D6W216_9CLOT3-phosphoshikimate1-carboxyvinyltransferaseOS=ClostridiumintestinaleOX=36845GN=aroAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	473.77862548828125	2	473.780773	945.546994	-0.86083	-0.00040785	-2.8784	-0.0013637	-3.7392	-0.0017716	473.7794680535518	34.232	1.7401	34.232	33.921	35.661	0					70	36	4	0	0	0	0.64377	1	1650	1650		54.765	2.4655	1	879680			34728	35420	28571	28598	38179	38179					0.07204213647344204
LRFPALGEP	9	Unmodified	_LRFPALGEP_					0	0	0		OGT|p.V881L|1|0.1|ENSG00000147162|chrX:71567551-71567551|G/C|missense_variant	OGT|p.V881L|1|0.1|ENSG00000147162|chrX:71567551-71567551|G/C|missense_variant	OGT|p.V881L|1|0.1|ENSG00000147162|chrX:71567551-71567551|G/C|missense_variant	MSMS	OvCa99_classI_Rep5	1	500.2864685058594	2	500.284734	998.554916	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.913	1	97.913	97.413	98.413	0								0	0	0	0.15766	1	10770	10770		63.306	4.5243	1				34729	15448	28572	28599	38180	38180					0.05558064168462806
LRFPKPIS	8	Unmodified	_LRFPKPIS_					0	0	0			REV__ENST00000428879.5_1_2:150436081-150438721:-|nuORF	REV__ENST00000428879.5_1_2:150436081-150438721:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	479.2969055175781	2	479.297645	956.580737	-0.75064	-0.00035978	0.51879	0.00024865	-0.23185	-0.00011113	479.29773010897736	115.4	1.335	115.29	115	116.33	-0.11777					67	26	3	0	0	0	0.73938	1	11020	11020		31.955	1.4512	1	535680	+		34730	25695	28573	28600	38181	38181					0.10070958410744879
LRFRLFIE	8	Unmodified	_LRFRLFIE_					0	0	0			REV__ENST00000380693.7_1_X:11777873-11777969:+|nuORF	REV__ENST00000380693.7_1_X:11777873-11777969:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	547.3297729492188	2	547.329476	1092.6444	-0.5311	-0.00029069	-4.0018	-0.0021903	-4.5329	-0.002481	547.3271242122657	63.586	2.4189	63.586	62.253	64.672	0					181	59	4	0	0	0	0.50674	1	5652	5652		76.847	10.417	1	4975300	+		34731	25183	28574	28601	38182	38182					0.1017831884782936
LRFSDVLVL	9	Unmodified	_LRFSDVLVL_					0	0	0		ENST00000563542.5_1_15:72185266-72338904:-|nuORF;MYO9A|p.E2496Lfs*8|1|0.27|ENSG00000066933|chr15:71826741-71826742|-/AA|frameshift_variant;MYO9A|p.E2496Tfs*17|1|0.24|ENSG00000066933|chr15:71826742-71826743|-/ACCCACCTTTGGGAAGGGAAAAGAGGGTG|frameshift_variant;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;nc|ENSG00000066933|B2RTY4-5|MYO9A	ENST00000563542.5_1_15:72185266-72338904:-|nuORF	ENST00000563542.5_1_15:72185266-72338904:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.875	2	531.321317	1060.62808	-0.6548	-0.00034791	-0.97165	-0.00051626	-1.6264	-0.00086417	531.3203786956572	66.263	0.47244	66.263	66.059	66.531	0					25	11	3	0	0	0	0.027456	1	6152	6152		47.916	0	1	1116400			34732	1362	28575	28602	38183	38183					0.1001919289108173
LRFWLLFWLLL	11	Unmodified	_LRFWLLFWLLL_					0	0	0		ENST00000531894.5_1_16:70011782-70023933:-|nuORF	ENST00000531894.5_1_16:70011782-70023933:-|nuORF	ENST00000531894.5_1_16:70011782-70023933:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.64337158203125	3	507.311114	1518.91151	-5.2391	-0.0026578	2.5927	0.0013153	-2.6463	-0.0013425	507.3121827583452	162.21	1.6448	161.98	160.99	162.64	-0.22697					94	32	4	0	0	0	0.72582	1	16528	16528		3.4087	0.19739	1	66373			34733	13316	28576	28603	38184	38184					0.17281404006553203
LRFWPRWRRWP	11	Unmodified	_LRFWPRWRRWP_					0	0	0			REV__ENST00000532024.1_1_11:70118214-70118385:+|nuORF	REV__ENST00000532024.1_1_11:70118214-70118385:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.7696533203125	3	552.644261	1654.91095	2.4884	0.0013752	-0.79281	-0.00043814	1.6956	0.00093705	552.6430475931768	75.637	0.55196	75.637	75.444	75.996	0					15	13	2	0	0	0	0.02656	1	7564	7564		1.4188	0	1	283340	+		34734	27225	28577	28604	38185	38185					0.10969422130028761
LRFYVRRQKIP	11	Unmodified	_LRFYVRRQKIP_					0	0	0			REV__ENSG00000176092|ENST00000308182|CRYBG2	REV__ENSG00000176092|ENST00000308182|CRYBG2	MULTI-MSMS	OvCa9_classI_Rep2	2	492.63421630859375	3	492.636772	1474.88849	-4.4123	-0.0021737	-0.46274	-0.00022796	-4.8751	-0.0024016	492.6364518280441	160.52	2.4825	160.29	159.35	161.83	-0.22697					136	50	4	0	0	0	0.72573	1	16392	16392		6.001	0	1	91160	+		34735	21931	28578	28605	38186	38186					0.1700377794177257
LRGAAAKL	8	Unmodified	_LRGAAAKL_					0	0	0			REV__nc|ENSG00000114650|Q12770-3|SCAP	REV__nc|ENSG00000114650|Q12770-3|SCAP	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.71417236328125	2	400.261062	798.507572	0.073055	2.9241E-05	-0.24097	-9.6452E-05	-0.16792	-6.7211E-05	400.2608497223268	64.076	0.52286	64.076	63.894	64.417	0					23	12	3	0	0	0	0.028476	1	5845	5845		33.516	0	1	560480	+		34736	18194	28579	28606	38187	38187					0.10025829688129306
LRGALLPSL	9	Unmodified	_LRGALLPSL_					0	0	0		nc|ENSG00000179085|Q9P2X0-2|DPM3	nc|ENSG00000179085|Q9P2X0-2|DPM3	nc|ENSG00000179085|Q9P2X0-2|DPM3	MULTI-MSMS	OvCa99_classI_Rep5	1	470.30377197265625	2	470.302927	938.591301	2.1288	0.0010012	-0.063726	-2.997E-05	2.0651	0.00097122	470.3027259232975	117.73	0.51015	117.73	117.51	118.02	0					19	10	3	0	0	0	0.13482	1	13485	13485		87.754	10.908	1	306470			34737	15198	28580	28607	38188	38188					0.11954941065175717
LRGANPRGQL	10	Unmodified	_LRGANPRGQL_					0	0	0		nc|ENSG00000124194|Q96MZ0-2|GDAP1L1	nc|ENSG00000124194|Q96MZ0-2|GDAP1L1	nc|ENSG00000124194|Q96MZ0-2|GDAP1L1	MULTI-MSMS	OvCa9_classI_Rep2	2	541.3152465820312	2	541.314889	1080.61522	-0.38892	-0.00021053	0.42493	0.00023002	0.036007	1.9491E-05	541.3149781627068	133.47	0.93706	133.24	132.92	133.85	-0.22696					37	17	3	0	0	0	0.53885	1	13206	13206		49.442	0	1	101750			34738	14998	28581	28608	38189	38189					0.0781417455157225
LRGCRRRR	8	Unmodified	_LRGCRRRR_					0	0	0			REV__ENST00000521305.5_1_5:179228908-179230475:-|nuORF	REV__ENST00000521305.5_1_5:179228908-179230475:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3428955078125	2	536.822692	1071.63083	-0.33601	-0.00018038	-3.0122	-0.001617	-3.3482	-0.0017974	536.821189426875	41.308	0.22633	41.308	41.104	41.33	0					10	4	3	0	0	0	0.028476	1	2549	2549		26.796	1.3459	1	111530	+		34739	27047	28582	28609	38190	38190					0.09788182587612937
LRGGAVRT	8	Unmodified	_LRGGAVRT_					0	0	0			REV__ENST00000539421.1_1_17:6014204-6021415:+|nuORF	REV__ENST00000539421.1_1_17:6014204-6021415:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	415.2568359375	2	415.253769	828.492984	1.1662	0.00048425	4.1287	0.0017145	5.2949	0.0021987	415.25533281494904	45.777	0.61568	45.777	45.582	46.198	0					25	13	3	0	0	0	0.6962	1	3192	3192		44.117	1.7207	1	634230	+		34740	27336	28583	28610	38191	38191					0.07187757539986706
LRGIHEPFI	9	Unmodified	_LRGIHEPFI_					0	0	0			REV__tr|A0A7D7A238|A0A7D7A238_9CLOTHydroxyaciddehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06855PE=3SV=1	REV__tr|A0A7D7A238|A0A7D7A238_9CLOTHydroxyaciddehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06855PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.3145141601562	2	541.311284	1080.60801	2.3286	0.0012605	4.3108	0.0023335	6.6394	0.003594	541.3134189727126	134.82	1.0887	133.28	132.97	134.05	-1.5437					46	20	3	0	0	0	0.56889	1	13034	13034		35.618	4.0885	1	159960	+		34741	32521	28584	28611	38192	38192					0.07093441951133173
LRGKEKPKK	9	Unmodified	_LRGKEKPKK_					0	0	0		ENST00000484502.1_1_7:140706232-140714400:-|nuORF;ENSG00000090263|ENST00000324787|MRPS33	ENST00000484502.1_1_7:140706232-140714400:-|nuORF	ENST00000484502.1_1_7:140706232-140714400:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	542.3544921875	2	542.353483	1082.69241	-0.12574	-6.8196E-05	0.023513	1.2752E-05	-0.10223	-5.5443E-05	542.3533127386092	22.468	0.40009	22.468	22.3	22.7	0					15	8	3	0	0	0	0.67509	1	219	219		23.042	0	1	41885			34742	1834	28585	28612	38193	38193					0.1543739276787619
LRGKRTPRS	9	Unmodified	_LRGKRTPRS_					0	0	0		ENST00000511184.5_1_4:140060622-140098172:-|nuORF	ENST00000511184.5_1_4:140060622-140098172:-|nuORF	ENST00000511184.5_1_4:140060622-140098172:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.8480834960938	2	535.830706	1069.64686	-1.1237	-0.00060213	-2.552	-0.0013675	-3.6758	-0.0019696	535.8290439480821	45.91	0.89899	43.2	42.797	43.696	-2.7097					30	17	3	0	0	0	0.027462	1	2763	2763		53.351	22.848	1	58718			34743	12980	28586	28613	38194	38194					0.11482167305484836
LRGLLLPCSHL	11	Unmodified	_LRGLLLPCSHL_					0	0	0			REV__ENST00000403682.7_1_22:20748811-20761255:+|nuORF	REV__ENST00000403682.7_1_22:20748811-20761255:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	611.35498046875	2	611.36045	1220.70635	-3.7398	-0.0022864	-3.3731	-0.0020622	-7.1129	-0.0043485	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.7046	2	15347	15347;15352		28.081	7.1346	1	331570	+		34744	25430	28587	28614	38195;38196	38195					0.10482302204650296
LRGLLLPCSHL	11	Unmodified	_LRGLLLPCSHL_					0	0	0			REV__ENST00000403682.7_1_22:20748811-20761255:+|nuORF	REV__ENST00000403682.7_1_22:20748811-20761255:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3567504882812	2	611.36045	1220.70635	-3.1571	-0.0019301	-3.9744	-0.0024298	-7.1315	-0.0043599	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.68021	2	12678	12678;12780		36.447	4.9169	1	666990	+		34745	25430	28587	28614	38197;38198	38197					0.10482302204650296
LRGLRHHD	8	Unmodified	_LRGLRHHD_					0	0	0		ENST00000461006.5_1_1:32096163-32098865:-|nuORF	ENST00000461006.5_1_1:32096163-32098865:-|nuORF	ENST00000461006.5_1_1:32096163-32098865:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	502.2818908691406	2	502.280849	1002.54715	-0.91373	-0.00045895	3.1854	0.0016	2.2717	0.001141	502.2823787976924	94.031	2.3002	92.931	92.592	94.892	-1.0995					89	45	5	0	0	0	0.42208	1	8417	8417		85.359	5.4203	1	1036800			34746	12165	28588	28615	38199	38199					0.045973496915507894
LRGLSVIIP	9	Unmodified	_LRGLSVIIP_					0	0	0		ENSG00000160959|ENST00000292524|LRRC14	ENSG00000160959|ENST00000292524|LRRC14	ENSG00000160959|ENST00000292524|LRRC14	MULTI-SECPEP	OvCa9_classI_Rep3	3	483.9366760253906	2	484.318577	966.622602	0.57087	0.00027648	-0.87933	-0.00042588	-0.30846	-0.00014939	484.3179083698215	67.785	0.94856	64.897	64.59	65.538	-2.8873					27	18	2	0	0	0	0.027462	1	2901	2901		29.15	0	1	20490			34747	6109	28589	28616	38200	38200					0.13795514099274442
LRGLVRVLN	9	Unmodified	_LRGLVRVLN_					0	0	0		ENSG00000049769|ENST00000055335|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3392944335938	2	520.340375	1038.6662	0.80842	0.00042065	-1.1686	-0.00060808	-0.36019	-0.00018742	520.3396330477779	43.438	1.3914	40.728	40.41	41.802	-2.7097					71	27	4	0	0	0	0.29717	1	2412	2412		63.306	0	1	349050			34748	1174	28590	28617	38201	38201					0.14841123596420402
LRGLVRVLN	9	Unmodified	_LRGLVRVLN_					0	0	0		ENSG00000049769|ENST00000055335|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.3399047851562	2	520.340375	1038.6662	-1.4242	-0.00074106	0.67069	0.00034899	-0.75349	-0.00039207	520.3406316371613	43.626	1.7808	40.618	40.326	42.106	-3.0074					96	34	5	0	0	0	0.31747	1	2109	2109		60.972	7.6205	1	814690			34749	1174	28590	28617	38202	38202					0.14841123596420402
LRGNEALLN	9	Unmodified	_LRGNEALLN_					0	0	0			REV__ENST00000491703.5_1_21:35279611-35286837:-|nuORF	REV__ENST00000491703.5_1_21:35279611-35286837:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.822998046875	2	500.282723	998.550893	-0.14741	-7.3744E-05	-2.6554	-0.0013285	-2.8028	-0.0014022	500.28272455998103	73.459	0.39647	73.459	73.359	73.755	0					12	9	2	0	0	0	0.027433	1	7198	7198		37.812	0	1	178650	+		34750	23449	28591	28618	38203	38203					0.05155974674744357
LRGNSQILT	9	Unmodified	_LRGNSQILT_					0	0	0			REV__tr|A0A553SPY2|A0A553SPY2_NIACIHADfamilyphosphataseOS=NialliacirculansOX=1397GN=CEQ21_09625PE=4SV=1	REV__tr|A0A553SPY2|A0A553SPY2_NIACIHADfamilyphosphataseOS=NialliacirculansOX=1397GN=CEQ21_09625PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	501.2897033691406	2	501.290548	1000.56654	-0.80197	-0.00040202	0.50048	0.00025089	-0.30149	-0.00015113	501.2906816095173	135.63	4.8104	135.4	133.71	138.52	-0.22697					221	98	3	0	0	0	0.69123	1	13717	13717		20.947	1.587	1	70595	+		34751	30583	28592	28619	38204	38204					0.06628261191792717
LRGPPTVKVF	10	Unmodified	_LRGPPTVKVF_					0	0	0			REV__ENST00000488090.1_1_10:101128283-101137029:+|nuORF	REV__ENST00000488090.1_1_10:101128283-101137029:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.2611694335938	2	557.342584	1112.67061	0.34686	0.00019332	-0.934	-0.00052056	-0.58713	-0.00032723	557.3420027785339	70.975	0.4277	70.975	70.722	71.15	0					17	10	2	0	0	0	0.027198	1	6804	6804		19.997	0.89325	1	324550	+		34752	26615	28593	28620	38205	38205					0.11878588019317249
LRGQAPVRRA	10	Unmodified	_LRGQAPVRRA_					0	0	0			REV__ENST00000498611.5_1_22:50656167-50657252:-|nuORF	REV__ENST00000498611.5_1_22:50656167-50657252:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	562.3421630859375	2	562.343981	1122.67341	-1.142	-0.00064221	-0.23342	-0.00013126	-1.3754	-0.00077347	562.3438081477608	141.84	4.7959	141.62	140.24	145.03	-0.22697					133	96	2	0	0	0	0.78463	1	14256	14256		20.947	0.95016	1	113870	+		34753	26797	28594	28621	38206	38206					0.11697856196838075
LRGQLIAHY	9	Unmodified	_LRGQLIAHY_					0	0	0			REV__ENSG00000188352|ENST00000338382|FOCAD	REV__ENSG00000188352|ENST00000338382|FOCAD	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.7791137695312	2	535.808908	1069.60326	-0.36114	-0.0001935	-1.6958	-0.00090862	-2.0569	-0.0011021	535.808188333246	128.69	0.64288	127.24	127	127.64	-1.4565					17	12	2	0	0	0	0.027462	1	12338	12338		25.45	0	1	26711	+		34754	22709	28595	28622	38207	38207					0.07124557808378995
LRGQLIAHY	9	Unmodified	_LRGQLIAHY_					0	0	0			REV__ENSG00000188352|ENST00000338382|FOCAD	REV__ENSG00000188352|ENST00000338382|FOCAD	MULTI-MATCH	OvCa9_classI_Rep2	2		2	535.808908	1069.60326	0.13399	7.1791E-05	-2.8325	-0.0015177	-2.6985	-0.0014459	535.8075258690783	127.61	0.69029	127.38	127.14	127.83	-0.22697	0.073541	-0.00064046	NaN	18.324	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29881	+		34755	22709	28595	28622							0.07124557808378995
LRGRGDVRRQL	11	Unmodified	_LRGRGDVRRQL_					0	0	0			REV__nc|ENSG00000141391|Q96N28-2|PRELID3A	REV__nc|ENSG00000141391|Q96N28-2|PRELID3A	MULTI-MSMS	OvCa9_classI_Rep4_	4	442.6031188964844	3	442.600609	1324.78	-1.4984	-0.0006632	4.3489	0.0019248	2.8505	0.0012616	442.6024623792791	50.389	2.298	47.247	46.61	48.908	-3.1416					99	44	3	0	0	0	0.65267	1	2896	2896		39.873	2.0616	1	430660	+		34756	19733	28596	28623	38208	38208					0.13059986691359882
LRGRPKSL	8	Unmodified	_LRGRPKSL_					0	0	0			REV__ENST00000429755.8_1_17:46669689-46679621:+|nuORF	REV__ENST00000429755.8_1_17:46669689-46679621:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	463.797607421875	2	463.798343	925.582134	0.29403	0.00013637	-0.86487	-0.00040112	-0.57084	-0.00026475	463.7979721487958	70.79	6.0908	68.07	67.699	73.79	-2.7196					279	121	5	0	0	0	0.61758	1	3263	3263		60.294	2.8413	1	3593600	+		34757	25704	28597	28624	38209	38209					0.11636592499519338
LRGTGDPGEA	10	Unmodified	_LRGTGDPGEA_					0	0	0			REV__ENST00000360270.6_1_X:64958466-64958872:+|nuORF	REV__ENST00000360270.6_1_X:64958466-64958872:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.74200439453125	2	486.740888	971.467223	-0.41628	-0.00020262	0.66837	0.00032532	0.25209	0.0001227	486.7410399017421	46.496	1.2414	43.424	42.876	44.117	-3.0724					52	23	3	0	0	0	0.39172	1	2445	2445		69.628	0.8408	1	415680	+		34758	24828	28598	28625	38210	38210					-0.01965181492960255
LRGTQLVSN	9	Unmodified	_LRGTQLVSN_					0	0	0		ENST00000443602.2_1:149673414-149673507:+|nuORF	ENST00000443602.2_1:149673414-149673507:+|nuORF	ENST00000443602.2_1:149673414-149673507:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3180847167969	2	494.282723	986.550893	0.12314	6.0864E-05	-0.87307	-0.00043154	-0.74994	-0.00037068	494.281999214073	104	0.36533	102.56	102.45	102.81	-1.4347					8	6	2	0	0	0	0.027462	1	7252	7252		29.17	10.846	1	14594			34759	11953	28599	28626	38211	38211					0.057079746747604077
LRGVRELLK	9	Unmodified	_LRGVRELLK_					0	0	0		ENSG00000117481|ENST00000474844|NSUN4;nc|ENSG00000117481|Q96CB9-2|NSUN4;ENST00000472157.1_1_1:46806507-46807258:+|nuORF	ENSG00000117481|ENST00000474844|NSUN4	ENSG00000117481|ENST00000474844|NSUN4	MULTI-MSMS	OvCa99_classI_Rep5	1	542.3533325195312	2	542.353483	1082.69241	-0.28541	-0.00015479	-0.015735	-8.5337E-06	-0.30115	-0.00016333	542.353443122758	43.207	1.1532	43.207	42.97	44.123	0					75	26	5	0	0	0	0.18193	1	2824	2824		79.451	0	1	4515100			34760	3257	28600	28627	38212	38212					0.1543739276787619
LRGVRELLK	9	Unmodified	_LRGVRELLK_					0	0	0		ENSG00000117481|ENST00000474844|NSUN4;nc|ENSG00000117481|Q96CB9-2|NSUN4;ENST00000472157.1_1_1:46806507-46807258:+|nuORF	ENSG00000117481|ENST00000474844|NSUN4	ENSG00000117481|ENST00000474844|NSUN4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.353483	1082.69241	-0.90107	-0.0004887	0.29401	0.00015946	-0.60706	-0.00032924	542.3534732391312	46.281	1.6873	43.572	43.099	44.786	-2.7097	0.067444	0.00018226	NaN	79.451	70	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185840			34761	3257	28600	28627							0.1543739276787619
LRGVRSRVTAP	11	Unmodified	_LRGVRSRVTAP_					0	0	0			REV__ENST00000313552.10_1_2:242664606-242665164:+|nuORF	REV__ENST00000313552.10_1_2:242664606-242665164:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3695068359375	2	606.370195	1210.72584	-3.14	-0.001904	2.1543	0.0013063	-0.98567	-0.00059768	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.72466	1	15005	15005		19.997	4.355	1	257720	+		34762	24371	28601	28628	38213	38213					0.12890394539795125
LRGYLDSPTE	10	Unmodified	_LRGYLDSPTE_					0	0	0			REV__ENSG00000179542|ENST00000356928|SLITRK4	REV__ENSG00000179542|ENST00000356928|SLITRK4	MULTI-SECPEP	OvCa9_classI_Rep2	2	575.8514404296875	2	575.790578	1149.5666	0.7383	0.00042511	-2.7757	-0.0015982	-2.0374	-0.0011731	576.2890613710348	87.694	0.29762	86.263	85.99	86.288	-1.4311					7	5	2	0	0	0	0.027001	1	7649	7649		28.081	0	1	27582	+		34763	22128	28602	28629	38214	38214					-0.0021978359889089916
LRHAGVGALL	10	Unmodified	_LRHAGVGALL_					0	0	0		ENST00000293662.8_1_12:52407935-52408853:+|nuORF	ENST00000293662.8_1_12:52407935-52408853:+|nuORF	ENST00000293662.8_1_12:52407935-52408853:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.2607421875	2	503.811451	1005.60835	1.8201	0.00091701	0.3949	0.00019896	2.2151	0.001116	503.81156206586957	78.704	0.37013	78.704	78.54	78.911	0					12	8	2	0	0	0	0.026871	1	8011	8011		45.952	13.997	1	224750			34764	10109	28603	28630	38215	38215					0.10576861670995186
LRHCTGGQ	8	Unmodified	_LRHCTGGQ_					0	0	0		ENSG00000265203|ENST00000584701|RBP3	ENSG00000265203|ENST00000584701|RBP3	ENSG00000265203|ENST00000584701|RBP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	435.2655029296875	2	436.213786	870.413019	0.54007	0.00023559	-0.2382	-0.00010391	0.30187	0.00013168	436.2137094858679	71.26	0.52029	71.26	71.109	71.629	0					17	12	2	0	0	0	0.028476	1	6899	6899		30.504	7.4612	1	376340			34765	9521	28604	28631	38216	38216					-0.027370521254852065
LRHGHVRSL	9	Unmodified	_LRHGHVRSL_					0	0	0		nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2	nc|ENSG00000114019|Q9Y2J4-3|AMOTL2	nc|ENSG00000114019|Q9Y2J4-3|AMOTL2	MULTI-MSMS	OvCa99_classI_Rep5	1	537.8171997070312	2	537.817599	1073.62064	-0.29961	-0.00016114	-0.48699	-0.00026191	-0.78661	-0.00042305	537.8172281577076	29.75	0.60033	29.75	29.536	30.136	0					28	10	4	0	0	0	0.22621	1	1084	1084		71.877	20.542	1	715270			34766	3006	28605	28632	38217	38217					0.08677898134033057
LRHGHVRSL	9	Unmodified	_LRHGHVRSL_					0	0	0		nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2	nc|ENSG00000114019|Q9Y2J4-3|AMOTL2	nc|ENSG00000114019|Q9Y2J4-3|AMOTL2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	537.817599	1073.62064	-0.14843	-7.983E-05	-1.2319	-0.00066252	-1.3803	-0.00074235	537.8168535131744	32.443	0.69621	29.748	29.457	30.153	-2.6954	-0.001131	-0.00059798	NaN	71.877	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19942			34767	3006	28605	28632							0.08677898134033057
LRHGYDRVL	9	Unmodified	_LRHGYDRVL_					0	0	0			REV__ENST00000566167.5_1_16:70380803-70394746:+|nuORF	REV__ENST00000566167.5_1_16:70380803-70394746:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.2161254882812	2	564.817264	1127.61998	0.1623	9.1669E-05	-0.31514	-0.000178	-0.15285	-8.633E-05	565.3188607908423	30.207	0.3969	30.207	30.036	30.433	0					17	7	4	0	0	0	0.027462	1	1138	1138		19.997	0	1	31427	+		34768	27698	28606	28633	38218	38218					0.06127058694301013
LRHHLTPHAR	10	Unmodified	_LRHHLTPHAR_					0	0	0		nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	MULTI-MSMS	OvCa9_classI_Rep3	3	413.2409362792969	3	413.239012	1236.69521	2.1217	0.00087677	3.1001	0.0012811	5.2218	0.0021579	413.24014103402243	64.54	2.2304	61.547	60.987	63.218	-2.9933					100	43	4	0	0	0	0.70834	1	2466	2466		29.551	0	1	320450			34769	5055	28607	28634	38219	38219					0.08632660945409043
LRHLLATVF	9	Unmodified	_LRHLLATVF_					0	0	0		ENST00000484693.1_1_6:30709216-30709507:-|nuORF;ENST00000484168.1_1_6:30709216-30709966:-|nuORF	ENST00000484693.1_1_6:30709216-30709507:-|nuORF	ENST00000484693.1_1_6:30709216-30709507:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.30712890625	2	535.329476	1068.6444	2.0897	0.0011187	0.44139	0.00023629	2.5311	0.001355	535.8301092406193	108.5	0.34641	108.5	108.28	108.63	0					13	7	3	0	0	0	0.027441	1	12274	12274		58.782	0	1	117560			34770	12596	28608	28635	38220	38220					0.11282318847838724
LRHLWVTLG	9	Unmodified	_LRHLWVTLG_					0	0	0			REV__ENST00000532739.1_1_16:16463294-16464996:+|nuORF	REV__ENST00000532739.1_1_16:16463294-16464996:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.8267211914062	2	547.827101	1093.63965	-4.8131	-0.0026367	3.5	0.0019174	-1.3131	-0.00071934	547.8288597088392	154.99	1.902	153.5	152.83	154.73	-1.4911					109	49	3	0	0	0	0.6653	1	15420	15420		24.203	4.8428	1	64964	+		34771	27241	28609	28636	38221	38221					0.09657434705081869
LRHPSRSKRL	10	Unmodified	_LRHPSRSKRL_					0	0	0		tr|A0A553SKM1|A0A553SKM1_NIACIRNApolymerasesigmafactorSigAOS=NialliacirculansOX=1397GN=rpoDPE=3SV=1	tr|A0A553SKM1|A0A553SKM1_NIACIRNApolymerasesigmafactorSigAOS=NialliacirculansOX=1397GN=rpoDPE=3SV=1	tr|A0A553SKM1|A0A553SKM1_NIACIRNApolymerasesigmafactorSigAOS=NialliacirculansOX=1397GN=rpoDPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	417.26068115234375	3	417.258184	1248.75272	-0.028058	-1.1707E-05	2.8927	0.001207	2.8646	0.0011953	417.2593546655009	51.779	0.80272	51.779	51.544	52.347	0					52	18	4	0	0	0	0.57535	1	4016	4016		45.022	3.5956	1	1497600			34772	33632	28610	28637	38222	38222					0.13829503150986966
LRHTALCL	8	Unmodified	_LRHTALCL_					0	0	0			REV__SVA_B_dup173|chr4:48185818-48187447:+|1.7426897649738875|0.0421009603888101|5.37|413.0|15|2|sense	REV__SVA_B_dup173|chr4:48185818-48187447:+|1.7426897649738875|0.0421009603888101|5.37|413.0|15|2|sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	463.7979431152344	2	463.765655	925.516756	0.31857	0.00014774	-1.3928	-0.00064594	-1.0742	-0.0004982	463.7651666682611	70.908	0.15316	68.188	68.112	68.265	-2.7196					4	2	2	0	0	0	0.028476	1	3269	3269		42.474	5.446	1	13665	+		34773	29467	28611	28638	38223	38223					0.051018549821378656
LRHTDKCML	9	Carbamidomethyl (C)	_LRHTDKC(Carbamidomethyl (C))ML_	LRHTDKC(1)ML		LRHTDKC(44)ML		0	1	0			REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|139|3|sense	REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|139|3|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	587.2950439453125	2	587.296993	1172.57943	-1.8304	-0.001075	-1.3653	-0.00080181	-3.1957	-0.0018768	587.2961004815837	119.51	2.07	118.17	117.83	119.9	-1.3444					114	39	5	0	0	0	0.48324	1	11266	11266		44.117	7.67	1	737630	+		34774	28546	28612	28639	38224	38224	350				4.6329880206030793E-05
LRHWLELRAAS	11	Unmodified	_LRHWLELRAAS_					0	0	0		ENST00000540469.5_1_12:132195753-132196293:+|nuORF	ENST00000540469.5_1_12:132195753-132196293:+|nuORF	ENST00000540469.5_1_12:132195753-132196293:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	450.9364318847656	3	451.257961	1350.75205	1.5696	0.00070829	-1.3144	-0.00059314	0.25518	0.00011515	451.2573257905692	63.519	0.78394	60.485	60.214	60.998	-3.0339					17	15	2	0	0	0	0.026113	1	2360	2360		24.232	14.526	1	19787			34775	13453	28613	28640	38225	38225					0.09070663711281668
LRHWTHRRVFY	11	Unmodified	_LRHWTHRRVFY_					0	0	0		ENST00000296575.7_1_4:145567307-145567847:+|nuORF	ENST00000296575.7_1_4:145567307-145567847:+|nuORF	ENST00000296575.7_1_4:145567307-145567847:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.7760009765625	3	524.288254	1569.84293	1.5586	0.00081717	0.87331	0.00045787	2.4319	0.001275	524.288677856846	29.2	0.1448	26.49	26.407	26.552	-2.7097					4	2	2	0	0	0	0.026549	1	677	677		3.6191	2.0961	1	10223			34776	10141	28614	28641	38226	38226					0.0808055247939592
LRIALLYS	8	Unmodified	_LRIALLYS_					0	0	0		ENSG00000134627|ENST00000299001|PIWIL4;nc|ENSG00000134627|Q7Z3Z4-3|PIWIL4;nc|ENSG00000134627|Q7Z3Z4-2|PIWIL4	ENSG00000134627|ENST00000299001|PIWIL4	ENSG00000134627|ENST00000299001|PIWIL4	MULTI-SECPEP	OvCa9_classI_Rep3	3	475.3126525878906	2	474.797478	947.580402	0.8618	0.00040918	-3.8287	-0.0018178	-2.9669	-0.0014087	474.7964816593924	114.56	0.44443	113.51	113.21	113.65	-1.055					9	8	2	0	0	0	0.028476	1	8460	8460		50.025	19.521	1	9105.3			34777	4313	28615	28642	38227	38227					0.10451538690904272
LRIAVNISSL	10	Unmodified	_LRIAVNISSL_					0	0	0		tr|A0A553SM66|A0A553SM66_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21985PE=4SV=1	tr|A0A553SM66|A0A553SM66_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21985PE=4SV=1	tr|A0A553SM66|A0A553SM66_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21985PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	543.3384399414062	2	543.337498	1084.66044	1.6819	0.00091386	-0.56393	-0.00030641	1.118	0.00060745	543.3372513180364	106.86	1.7458	106.86	106.54	108.28	0					122	40	5	0	0	0	0.13777	1	12082	12082		104.06	2.8042	1	33985000			34778	33807	28616	28643	38228	38228					0.12149980294088891
LRIEILRQN	9	Unmodified	_LRIEILRQN_					0	0	0			REV__ENST00000580498.5_1_17:57287412-57290261:+|nuORF	REV__ENST00000580498.5_1_17:57287412-57290261:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	577.8528442382812	2	577.853847	1153.69314	-0.97706	-0.0005646	0.46511	0.00026877	-0.51195	-0.00029583	577.8540296401256	69.687	0.81358	69.687	69.433	70.246	0					55	19	4	0	0	0	0.064985	2	6635	6635;6666		110.12	19.75	1	6168700	+		34779	27822	28617	28644	38229;38230	38229					0.12244187416945351
LRIGRPPQA	9	Unmodified	_LRIGRPPQA_					0	0	0			REV__ENST00000487909.5_1_21:37692562-37709192:+|nuORF	REV__ENST00000487909.5_1_21:37692562-37709192:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	504.31036376953125	2	504.309075	1006.6036	-1.4726	-0.00074263	3.8757	0.0019546	2.4031	0.0012119	504.31092076174866	120.79	0.93773	120.59	120.26	121.2	-0.19718					47	18	4	0	0	0	0.59983	1	11659	11659		31.955	1.4512	1	86974	+		34780	20603	28618	28645	38231	38231					0.10055977528213589
LRIHPIPLGLV	11	Unmodified	_LRIHPIPLGLV_					0	0	0			REV__tr|A0A553SMQ8|A0A553SMQ8_NIACIFormate-dependentphosphoribosylglycinamideformyltransferaseOS=NialliacirculansOX=1397GN=purTPE=3SV=1	REV__tr|A0A553SMQ8|A0A553SMQ8_NIACIFormate-dependentphosphoribosylglycinamideformyltransferaseOS=NialliacirculansOX=1397GN=purTPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	614.87158203125	2	614.400433	1226.78631	2.7257	0.0016747	-0.63809	-0.00039204	2.0876	0.0012826	614.4000141738978	116.24	0.68984	116.24	115.73	116.42	0					25	14	2	0	0	0	0.025681	1	13312	13312		26.693	6.6961	1	115140	+		34781	30363	28619	28646	38232	38232					0.18199111870148954
LRIPPATH	8	Unmodified	_LRIPPATH_					0	0	0		ENST00000406652.5_1_2:42797579-42797618:+|nuORF	ENST00000406652.5_1_2:42797579-42797618:+|nuORF	ENST00000406652.5_1_2:42797579-42797618:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	452.7717590332031	2	452.771794	903.529036	1.1688	0.00052922	-2.7832	-0.0012602	-1.6144	-0.00073095	452.7704123603052	139.8	1.0809	139.8	139.51	140.59	0					44	22	3	0	0	0	0.73288	1	16359	16359		35.201	3.2459	1	354730			34782	11484	28620	28647	38233	38233					0.0734121471683693
LRIREQREWLK	11	Unmodified	_LRIREQREWLK_					0	0	0			REV__tr|A0A553SJG6|A0A553SJG6_NIACIPeptidaseM23OS=NialliacirculansOX=1397GN=CEQ21_16750PE=4SV=1	REV__tr|A0A553SJG6|A0A553SJG6_NIACIPeptidaseM23OS=NialliacirculansOX=1397GN=CEQ21_16750PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.8030090332031	3	509.63532	1525.88413	-1.344	-0.00068496	3.0324	0.0015454	1.6884	0.00086048	509.6369113362038	50.73	1.1155	47.556	47.256	48.372	-3.1734					31	21	3	0	0	0	0.026482	1	3011	3011		4.8861	0	1	36899	+		34783	30005	28621	28648	38234	38234					0.14222268728235576
LRITSRTGM	9	Unmodified	_LRITSRTGM_					0	0	0			REV__GANAB|p.F831Rfs*67|1|0.13|ENSG00000089597|chr11:62626594-62626595|-/CTCCATCTCAA|frameshift_variant	REV__GANAB|p.F831Rfs*67|1|0.13|ENSG00000089597|chr11:62626594-62626595|-/CTCCATCTCAA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.767822265625	2	517.792401	1033.57025	-0.16993	-8.799E-05	-3.4816	-0.0018027	-3.6515	-0.0018907	517.7905127838677	57.085	1.5755	53.74	53.324	54.899	-3.3449					73	30	4	0	0	0	0.027426	1	3785	3785		56.721	10.749	1	282680	+		34784	28149	28622	28649	38235	38235					0.05480607694016726
LRIYLDERRDV	11	Unmodified	_LRIYLDERRDV_					0	0	0		ENST00000515664.5_1_4:175158565-175177261:-|nuORF;nc|ENSG00000164117|Q9NRD0-2|FBXO8;ENSG00000164117|ENST00000393674|FBXO8	ENST00000515664.5_1_4:175158565-175177261:-|nuORF	ENST00000515664.5_1_4:175158565-175177261:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.7416687011719	3	483.272047	1446.79431	0.2517	0.00012164	2.8237	0.0013646	3.0754	0.0014862	483.60846475909364	57.839	0.41895	57.839	57.65	58.069	0					21	9	3	0	0	0	0.026277	1	4871	4871		12.957	2.8536	1	303770			34785	6414	28623	28650	38236	38236					0.08878594328962208
LRKAGQVFL	9	Unmodified	_LRKAGQVFL_					0	0	0		nc|ENSG00000173786|P09543-2|CNP;ENSG00000173786|ENST00000393892|CNP	nc|ENSG00000173786|P09543-2|CNP	nc|ENSG00000173786|P09543-2|CNP	MULTI-MSMS	OvCa99_classI_Rep5	1	516.32275390625	2	516.321651	1030.62875	-0.50448	-0.00026047	0.018197	9.3953E-06	-0.48628	-0.00025108	516.3215153368826	61.174	0.72587	61.174	60.859	61.585	0					52	16	4	0	0	0	0.36502	1	5386	5386		55.504	5.4797	1	3888700			34786	7414	28624	28651	38237	38237					0.1146603233080441
LRKALFSTL	9	Unmodified	_LRKALFSTL_					0	0	0		TNFAIP3|p.T604Ifs*74|1|0.07|ENSG00000118503|chr6:137879255-137879256|-/TTACTTTGAACTTGTTCAG|frameshift_variant;ENSG00000118503|ENST00000612899|TNFAIP3	TNFAIP3|p.T604Ifs*74|1|0.07|ENSG00000118503|chr6:137879255-137879256|-/TTACTTTGAACTTGTTCAG|frameshift_variant	TNFAIP3|p.T604Ifs*74|1|0.07|ENSG00000118503|chr6:137879255-137879256|-/TTACTTTGAACTTGTTCAG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2804565429688	2	524.829309	1047.64407	2.2432	0.0011773	-0.59519	-0.00031237	1.6481	0.00086495	524.8289192024644	75.713	0.23801	75.713	75.563	75.801	0					8	5	2	0	0	0	0.027462	1	7560	7560		21.96	0	1	209420			34787	3310	28625	28652	38238	38238					0.12214899127980061
LRKCVVHAIF	10	Unmodified	_LRKCVVHAIF_					0	0	0			REV__nc|ENSG00000180694|Q6YI46-3|TMEM64	REV__nc|ENSG00000180694|Q6YI46-3|TMEM64	MULTI-SECPEP	OvCa99_classI_Rep5	1	592.8019409179688	2	593.349886	1184.68522	1.4694	0.00087188	2.9554	0.0017536	4.4248	0.0026255	593.3513009364566	80.876	0.29285	80.876	80.744	81.037	0					10	6	2	0	0	0	0.027204	1	8308	8308		17.365	5.8539	1	147870	+		34788	22186	28626	28653	38239	38239					0.10026336895793975
LRKEEKEME	9	Unmodified	_LRKEEKEME_					0	0	0			REV__ENST00000473581.5_1_X:48834665-48847670:-|nuORF	REV__ENST00000473581.5_1_X:48834665-48847670:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	596.30615234375	2	596.305538	1190.59652	-0.17714	-0.00010563	-0.016386	-9.7709E-06	-0.19352	-0.0001154	596.3054687087324	46.961	7.1463	46.961	46.587	53.733	0					374	164	4	0	0	0	0.083631	1	3490	3490		101.6	3.0187	1	16604000	+		34789	16853	28627	28654	38240	38240					0.00884832074825681
LRKELYEEVE	10	Unmodified	_LRKELYEEVE_					0	0	0		tr|A0A7D6VYJ2|A0A7D6VYJ2_9CLOTTranslationalregulatorCsrAOS=ClostridiumintestinaleOX=36845GN=csrAPE=3SV=1	tr|A0A7D6VYJ2|A0A7D6VYJ2_9CLOTTranslationalregulatorCsrAOS=ClostridiumintestinaleOX=36845GN=csrAPE=3SV=1	tr|A0A7D6VYJ2|A0A7D6VYJ2_9CLOTTranslationalregulatorCsrAOS=ClostridiumintestinaleOX=36845GN=csrAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	437.2611389160156	3	436.566237	1306.67688	-0.3272	-0.00014284	-2.2116	-0.0009655	-2.5388	-0.0011083	436.56517877368435	34.512	0.55964	34.512	34.304	34.864	0					26	11	4	0	0	0	0.027187	1	1684	1684		14.086	0	1	270590			34790	35333	28628	28655	38241	38241					0.03581016669500059
LRKENELF	8	Unmodified	_LRKENELF_					0	0	0		ENSG00000152484|ENST00000282344|USP12	ENSG00000152484|ENST00000282344|USP12	ENSG00000152484|ENST00000282344|USP12	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.7939453125	2	524.792924	1047.57129	-1.2265	-0.00064368	1.1083	0.00058161	-0.11828	-6.207E-05	524.7934682439004	92.013	1.3664	89.47	89.111	90.478	-2.5425					63	26	3	0	0	0	0.59148	1	7980	7980		65.803	0	1	546010			34791	5626	28629	28656	38242	38242					0.04941145334532848
LRKENLDL	8	Unmodified	_LRKENLDL_					0	0	0		ENSG00000078142|ENST00000262039|PIK3C3	ENSG00000078142|ENST00000262039|PIK3C3	ENSG00000078142|ENST00000262039|PIK3C3	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.8174133300781	2	500.792924	999.571294	2.9905	0.0014976	1.2242	0.00061307	4.2147	0.0021107	500.7923968007295	102.54	0.51273	102.54	102.29	102.81	0					17	11	2	0	0	0	0.028476	1	11468	11468		31.955	0	1	178220			34792	1588	28630	28657	38243	38243					0.07149145334562945
LRKESIQLRDL	11	Unmodified	_LRKESIQLRDL_					0	0	0		MST1R|p.F1128Wfs*30|1|0.12|ENSG00000164078|chr3:49891550-49891551|-/TTACTGTTCC|frameshift_variant;MST1R|p.D1208Efs*20|1|0.82|ENSG00000164078|chr3:49891217-49891218|-/GTAC|frameshift_variant;nc|ENSG00000164078|Q04912-7|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;ENST00000411578.6_1_3:49924742-49933170:-|nuORF	MST1R|p.F1128Wfs*30|1|0.12|ENSG00000164078|chr3:49891550-49891551|-/TTACTGTTCC|frameshift_variant	MST1R|p.F1128Wfs*30|1|0.12|ENSG00000164078|chr3:49891550-49891551|-/TTACTGTTCC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	457.60736083984375	3	457.608659	1369.80415	-3.7463	-0.0017143	2.2282	0.0010197	-1.518	-0.00069467	457.60971240856696	157.06	2.9403	156.83	155.39	158.33	-0.22696					220	89	3	0	0	0	0.7252	1	16031	16031		12.957	2.8536	1	46638			34793	6403	28631	28658	38244	38244					0.1340378233435331
LRKEYFFD	8	Unmodified	_LRKEYFFD_					0	0	0		KCNA1|p.N78K|1|0.1|ENSG00000111262|chr12:4911612-4911612|C/A|missense_variant	KCNA1|p.N78K|1|0.1|ENSG00000111262|chr12:4911612-4911612|C/A|missense_variant	KCNA1|p.N78K|1|0.1|ENSG00000111262|chr12:4911612-4911612|C/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	559.2864990234375	2	559.287474	1116.5604	1.8335	0.0010255	-2.3972	-0.0013407	-0.56374	-0.00031529	559.285935160322	57.961	2.4261	54.834	53.92	56.346	-3.1264					105	62	3	0	0	0	0.71369	1	1727	1727		40.573	1.3198	1	45402			34794	14516	28632	28659	38245	38245					0.0067774296028346726
LRKFDRMLRRR	11	Unmodified	_LRKFDRMLRRR_					0	0	0			REV__ENST00000511807.1_1_5:133707262-133710155:+|nuORF	REV__ENST00000511807.1_1_5:133707262-133710155:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	516.3070068359375	3	516.312294	1545.91505	-4.8011	-0.0024789	-0.11448	-5.9109E-05	-4.9156	-0.002538	516.3122700311526	161.49	2.0313	161.27	159.91	161.94	-0.22696					101	40	4	0	0	0	0.72582	1	16458	16458		2.8518	1.3288	1	52729	+		34795	17015	28633	28660	38246	38246					0.16393143561435863
LRKFKKLYKNK	11	Unmodified	_LRKFKKLYKNK_					0	0	0		ENST00000543809.5_1_12:28605516-28605582:+|nuORF	ENST00000543809.5_1_12:28605516-28605582:+|nuORF	ENST00000543809.5_1_12:28605516-28605582:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	489.6522521972656	3	489.317039	1464.92929	-0.55824	-0.00027316	3.2779	0.001604	2.7197	0.0013308	489.31864172110375	24.091	0.64951	24.091	23.886	24.536	0					25	12	3	0	0	0	0.72573	1	410	410		6.001	2.5923	1	37485			34796	13499	28634	28661	38247	38247					0.2154211926140306
LRKFPADVLL	10	Unmodified	_LRKFPADVLL_					0	0	0		ENST00000333229.6_2_21:40559190-40559235:-|nuORF	ENST00000333229.6_2_21:40559190-40559235:-|nuORF	ENST00000333229.6_2_21:40559190-40559235:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	586.364990234375	2	586.363516	1170.71248	1.271	0.00074525	0.93126	0.00054605	2.2022	0.0012913	586.3640401531661	109.88	0.94326	109.88	109.55	110.49	0					32	20	2	0	0	0	0.26627	1	12451	12451		84.916	2.675	1	1018300			34797	10467	28635	28662	38248	38248					0.13395143707839452
LRKHEGLE	8	Unmodified	_LRKHEGLE_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;SPTAN1|p.Q1734Rfs*19|1|0.63|ENSG00000197694|chr9:128615697-128615725|CCAAGTAAAGGACAAGAGGGACACCATCA/-|frameshift_variant;SPTAN1|p.M1752Ifs*16|1|0.07|ENSG00000197694|chr9:128615752-128615753|-/TTCCTGAGTTCTTATG|frameshift_variant;SPTAN1|p.C956Afs*33|1|0.61|ENSG00000197694|chr9:128587691-128587691|C/-|frameshift_variant	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.2171630859375	2	491.277441	980.540328	-0.77228	-0.0003794	-0.89186	-0.00043815	-1.6641	-0.00081755	491.27667734785257	42.393	0.55618	42.393	42.068	42.624	0					17	12	2	0	0	0	0.028476	1	2700	2700		54.776	12.38	1	216120			34798	8736	28636	28663	38249	38249					0.04927992020327565
LRKIAVAAASK	11	Unmodified	_LRKIAVAAASK_					0	0	0		ENSG00000143320|ENST00000368222|CRABP2	ENSG00000143320|ENST00000368222|CRABP2	ENSG00000143320|ENST00000368222|CRABP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.7838745117188	2	564.36659	1126.71863	0.21158	0.00011941	-0.67393	-0.00038034	-0.46235	-0.00026094	564.8677818056062	42.295	0.55435	39.315	39.116	39.67	-2.9804					14	10	2	0	0	0	0.026042	1	1943	1943		20.03	0	1	12480			34799	5033	28637	28664	38250	38250					0.16033661939354715
LRKILMNV	8	Unmodified	_LRKILMNV_					0	0	0			REV__tr|A0A553STG2|A0A553STG2_NIACISugarABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_05010PE=4SV=1	REV__tr|A0A553STG2|A0A553STG2_NIACISugarABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_05010PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.3243713378906	2	493.812605	985.610657	-0.31287	-0.0001545	-3.1361	-0.0015487	-3.449	-0.0017032	493.81189771852456	79.86	0.38426	77.109	76.844	77.228	-2.7514					11	7	2	0	0	0	0.028476	1	6493	6493		50.025	7.5501	1	42229	+		34800	30957	28638	28665	38251	38251					0.11727574084443404
LRKKKKGK	8	Unmodified	_LRKKKKGK_					0	0	0		nc|ENSG00000157119|Q2TBA0-2|KLHL40;ENSG00000157119|ENST00000287777|KLHL40	nc|ENSG00000157119|Q2TBA0-2|KLHL40	nc|ENSG00000157119|Q2TBA0-2|KLHL40	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3235778808594	2	493.353286	984.692019	-0.43368	-0.00021396	-4.3256	-0.002134	-4.7593	-0.002348	493.3497508945016	78.804	0.25024	76.457	76.257	76.507	-2.3468					5	4	2	0	0	0	0.028476	1	4211	4211		25.45	6.0902	1	24887			34801	5876	28639	28666	38252	38252					0.1990601783869579
LRKKNKQYQIP	11	Unmodified	_LRKKNKQYQIP_					0	0	0		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-SECPEP	OvCa9_classI_Rep2	2	472.29315185546875	3	472.620899	1414.84087	-0.44465	-0.00021015	0.323	0.00015266	-0.12165	-5.7494E-05	472.62100804029296	94.113	0.85758	93.014	92.749	93.606	-1.0995					27	16	2	0	0	0	0.026302	1	8460	8460		17.167	5.2344	1	65064			34802	5286	28640	28667	38253	38253					0.15004078950937583
LRKKQRRL	8	Unmodified	_LRKKQRRL_					0	0	0		ENSG00000188993|ENST00000682860|LRRC66	ENSG00000188993|ENST00000682860|LRRC66	ENSG00000188993|ENST00000682860|LRRC66	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.3353881835938	2	549.372541	1096.73053	-0.15274	-8.3911E-05	-3.2867	-0.0018056	-3.4395	-0.0018896	549.3707996349092	31.004	0.14555	31.004	30.93	31.076	0					4	2	2	0	0	0	0.028476	1	1234	1234		13.775	0.81615	1	33387			34803	8524	28641	28668	38254	38254					0.18603323473212185
LRKLPKPPH	9	Unmodified	_LRKLPKPPH_					0	0	0			REV__ENSG00000272031|ENST00000606888|ANKRD34A	REV__ENSG00000272031|ENST00000606888|ANKRD34A	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.3260498046875	2	543.350743	1084.68693	-0.69795	-0.00037923	-0.65399	-0.00035535	-1.3519	-0.00073458	543.8505389270687	61.569	0.28453	61.569	61.458	61.743	0					9	6	2	0	0	0	0.027462	1	5452	5452		31.955	3.7006	1	238160	+		34804	23612	28642	28669	38255	38255					0.14797713976054183
LRKLSVYLT	9	Unmodified	_LRKLSVYLT_					0	0	0			REV__tr|A0A7D6ZUR1|A0A7D6ZUR1_9CLOTPadRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12870PE=4SV=1	REV__tr|A0A7D6ZUR1|A0A7D6ZUR1_9CLOTPadRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12870PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	546.8399658203125	2	546.842416	1091.67028	-4.8246	-0.0026383	1.033	0.00056488	-3.7916	-0.0020734	546.8429110027589	158.57	1.287	158.34	158.06	159.35	-0.22697					77	26	5	0	0	0	0.59983	1	16108	16108		31.955	1.4512	1	487190	+		34805	32227	28643	28670	38256	38256					0.12811168299458586
LRKNQNMR	8	Unmodified	_LRKNQNMR_					0	0	0		ENST00000271375.6_1_1:168215690-168215831:+|nuORF	ENST00000271375.6_1_1:168215690-168215831:+|nuORF	ENST00000271375.6_1_1:168215690-168215831:+|nuORF	MSMS	OvCa99_classI_Rep5	1	530.2938842773438	2	530.295642	1058.57673	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.274	1	34.274	33.774	34.774	0								0	0	0	0.30129	1	1640	1640		71.378	2.5911	1				34806	9992	28644	28671	38257	38257					0.04978545645394661
LRKRPYLCN	9	Unmodified	_LRKRPYLCN_					0	0	0			REV__ENSG00000172167|ENST00000305949|MTBP	REV__ENSG00000172167|ENST00000305949|MTBP	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.0044555664062	2	581.829317	1161.64408	1.3042	0.00075883	-0.44079	-0.00025646	0.86343	0.00050237	582.3303584787623	125.13	0.55145	125.13	124.98	125.53	0					22	14	2	0	0	0	0.027462	1	14445	14445		29.15	13.508	1	133660	+		34807	21679	28645	28672	38258	38258					0.06972575856366348
LRKRSLKHL	9	Unmodified	_LRKRSLKHL_					0	0	0		ROS1|p.T1963Dfs*18|1|0.07|ENSG00000047936|chr6:117319921-117319922|-/GGCATGTTTGAAGAAAAATGATTGCCTGATAGGTC|frameshift_variant;ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1	ROS1|p.T1963Dfs*18|1|0.07|ENSG00000047936|chr6:117319921-117319922|-/GGCATGTTTGAAGAAAAATGATTGCCTGATAGGTC|frameshift_variant	ROS1|p.T1963Dfs*18|1|0.07|ENSG00000047936|chr6:117319921-117319922|-/GGCATGTTTGAAGAAAAATGATTGCCTGATAGGTC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	575.87939453125	2	575.880199	1149.74584	-0.33635	-0.0001937	2.4703	0.0014226	2.1339	0.0012289	575.8816146863785	130.37	1.3721	129.25	128.83	130.21	-1.1121					69	27	4	0	0	0	0.6653	1	10368	10368		24.203	1.1603	1	151570			34808	1153	28646	28673	38259	38259					0.17696190270407897
LRKSLDPR	8	Unmodified	_LRKSLDPR_					0	0	0		ENST00000402456.4_1_19:43414555-43422019:-|nuORF	ENST00000402456.4_1_19:43414555-43422019:-|nuORF	ENST00000402456.4_1_19:43414555-43422019:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.8023681640625	2	492.801083	983.587613	0.48653	0.00023976	-1.4785	-0.00072861	-0.99198	-0.00048885	492.8003668451582	60.85	2.2415	57.42	57.095	59.336	-3.43					111	45	3	0	0	0	0.73766	1	4190	4190		32.812	2.3088	1	4101800			34809	11428	28647	28674	38260	38260					0.09516271291317935
LRKTRKKYMIR	11	Unmodified	_LRKTRKKYMIR_					0	0	0			REV__ENST00000519765.1_1_8:101164023-101165541:+|nuORF	REV__ENST00000519765.1_1_8:101164023-101165541:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.30987548828125	3	498.313412	1491.91841	-5.1129	-0.0025478	-1.9578	-0.00097561	-7.0708	-0.0035235	498.3123780141879	160.35	1.8473	160.12	159.68	161.53	-0.22697					120	37	4	0	0	0	0.72579	1	16396	16396		5.1424	0	1	150420	+		34810	20079	28648	28675	38261	38261					0.19212393615453038
LRKVIPVTN	9	Unmodified	_LRKVIPVTN_					0	0	0		tr|A0A7D6ZZV7|A0A7D6ZZV7_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_07680PE=4SV=1	tr|A0A7D6ZZV7|A0A7D6ZZV7_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_07680PE=4SV=1	tr|A0A7D6ZZV7|A0A7D6ZZV7_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_07680PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3338623046875	2	520.334759	1038.65496	-0.059232	-3.082E-05	-0.65104	-0.00033876	-0.71027	-0.00036958	520.3343753837619	67.127	1.729	64.466	64.099	65.828	-2.661					90	34	4	0	0	0	0.62352	1	5231	5231		29.15	0	1	916860			34811	35974	28649	28676	38262	38262					0.13718301502285613
LRKVLYGLF	9	Unmodified	_LRKVLYGLF_					0	0	0			REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	REV__nc|ENSG00000152223|Q9HCE0-2|EPG5	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.827880859375	2	554.847502	1107.68045	-0.63832	-0.00035417	1.0523	0.00058389	0.41402	0.00022972	554.8475997925983	59.514	0.57801	59.514	59.34	59.918	0					17	14	2	0	0	0	0.027462	1	5194	5194		24.203	11.244	1	683440	+		34812	20275	28650	28677	38263	38263					0.13091776024680257
LRLAAHGGG	9	Unmodified	_LRLAAHGGG_					0	0	0			REV__tr|A0A553SP32|A0A553SP32_NIACIChromosomepartitionproteinSmcOS=NialliacirculansOX=1397GN=smcPE=3SV=1	REV__tr|A0A553SP32|A0A553SP32_NIACIChromosomepartitionproteinSmcOS=NialliacirculansOX=1397GN=smcPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	426.245849609375	2	426.245944	850.477334	-0.93249	-0.00039747	1.1012	0.00046937	0.16868	7.1901E-05	426.2463036759244	138.33	1.7168	138.1	137.59	139.3	-0.22696					83	34	3	0	0	0	0.64339	1	13799	13799		26.796	1.3459	1	161940	+		34813	30484	28651	28678	38264	38264					0.046114710229517186
LRLAEKKQF	9	Unmodified	_LRLAEKKQF_					0	0	0		ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1;nc|ENSG00000179119|Q68D10-3|SPTY2D1	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.2805786132812	2	566.84549	1131.67643	1.4292	0.00081012	0.86883	0.00049249	2.298	0.0013026	566.8457407744173	109.72	1.2109	109.72	109.37	110.58	0					64	26	4	0	0	0	0.027455	1	12443	12443		51.335	12.529	1	2197900			34814	7804	28652	28679	38265	38265					0.11585686530997918
LRLAKGTI	8	Unmodified	_LRLAKGTI_					0	0	0		ENSG00000138722|ENST00000264790|MMRN1;nc|ENSG00000138722|Q13201-2|MMRN1	ENSG00000138722|ENST00000264790|MMRN1	ENSG00000138722|ENST00000264790|MMRN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.2915344238281	2	436.28982	870.565087	2.865	0.00125	1.6954	0.00073969	4.5604	0.0019896	436.29039727042573	135.9	2.0052	134.35	134.01	136.01	-1.5437					90	40	3	0	0	0	0.72896	1	13178	13178		37.159	5.2042	1	94245			34815	4717	28653	28680	38266	38266					0.12462671893706556
LRLAKGTI	8	Unmodified	_LRLAKGTI_					0	0	0		ENSG00000138722|ENST00000264790|MMRN1;nc|ENSG00000138722|Q13201-2|MMRN1	ENSG00000138722|ENST00000264790|MMRN1	ENSG00000138722|ENST00000264790|MMRN1	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	436.28982	870.565087	0.50693	0.00022117	4.2832	0.0018687	4.7902	0.0020899	436.29156887363246	134.35	1.4687	134.12	133.85	135.32	-0.22696	-0.18295	0.00076979	NaN	37.159	61	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94786			34816	4717	28653	28680							0.12462671893706556
LRLAKGTI	8	Unmodified	_LRLAKGTI_					0	0	0		ENSG00000138722|ENST00000264790|MMRN1;nc|ENSG00000138722|Q13201-2|MMRN1	ENSG00000138722|ENST00000264790|MMRN1	ENSG00000138722|ENST00000264790|MMRN1	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	436.28982	870.565087	-0.54459	-0.0002376	5.0419	0.0021997	4.4973	0.0019621	436.2918237784999	135.55	3.0869	134.44	133.87	136.95	-1.1076	0.13611	0.0014318	NaN	37.159	90	62	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61031			34817	4717	28653	28680							0.12462671893706556
LRLCSLPTL	9	Unmodified	_LRLCSLPTL_					0	0	0			REV__ENST00000598732.1_1_19:12779175-12779292:-|nuORF	REV__ENST00000598732.1_1_19:12779175-12779292:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.2785949707031	2	508.30207	1014.58959	2.1673	0.0011016	-4.3862	-0.0022295	-2.219	-0.0011279	508.2993163729548	77	0.53532	77	76.757	77.293	0					27	12	3	0	0	0	0.027447	1	7735	7735		66.429	13.493	1	892350	+		34818	28014	28654	28681	38267	38267					0.08287563984913504
LRLDHGEAAQ	10	Unmodified	_LRLDHGEAAQ_					0	0	0			REV__ENSG00000135605|ENST00000381501|TEC	REV__ENSG00000135605|ENST00000381501|TEC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.3267211914062	2	555.288537	1108.56252	1.7122	0.00095076	-3.59	-0.0019935	-1.8779	-0.0010428	555.2855739916544	85.633	0.74477	82.986	82.848	83.593	-2.6463					27	14	2	0	0	0	0.026867	1	7220	7220		35.152	6.0025	1	79691	+		34819	19303	28655	28682	38268	38268					0.012581716980776037
LRLDSSRLK	9	Unmodified	_LRLDSSRLK_					0	0	0		ENSG00000110756|ENST00000349215|HPS5;HPS5|p.N371Kfs*31|1|0.09|ENSG00000110756|chr11:18298843-18298844|-/ACCCCCAAAAACTGCAGTAATTT|frameshift_variant;ENST00000589545.1_1_11:18335991-18339405:-|nuORF	ENSG00000110756|ENST00000349215|HPS5	ENSG00000110756|ENST00000349215|HPS5	MULTI-MSMS	OvCa99_classI_Rep5	1	544.3328247070312	2	544.332747	1086.65094	-0.27935	-0.00015206	-1.488	-0.00080994	-1.7673	-0.000962	544.331809997687	33.31	1.1247	33.31	32.941	34.065	0					62	22	4	0	0	0	0.3076	1	1516	1516		62.107	16.135	1	1510900			34820	2793	28656	28683	38269	38269					0.11108212008548435
LRLGAATPLS	10	Unmodified	_LRLGAATPLS_					0	0	0			REV__ENST00000430398.2_1_1:73570714-73571443:+|nuORF	REV__ENST00000430398.2_1_1:73570714-73571443:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.8047790527344	2	499.803291	997.59203	-0.33802	-0.00016895	-0.25211	-0.00012601	-0.59014	-0.00029495	499.80314322548156	59.02	1.8331	55.628	55.3	57.133	-3.392					85	36	4	0	0	0	0.3094	1	3919	3919		79.713	2.395	1	2433000	+		34821	25713	28657	28684	38270	38270					0.09313735714226823
LRLHSLGPED	10	Unmodified	_LRLHSLGPED_					0	0	0		nc|ENSG00000162729|Q969P0-2|IGSF8;ENSG00000162729|ENST00000314485|IGSF8	nc|ENSG00000162729|Q969P0-2|IGSF8	nc|ENSG00000162729|Q969P0-2|IGSF8	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.8168334960938	2	568.806562	1135.59857	-0.47942	-0.0002727	1.9982	0.0011366	1.5188	0.00086391	569.3097799871633	29.034	0.49885	29.034	28.888	29.387	0					21	9	3	0	0	0	0.026659	1	984	984		64.207	19.676	1	203170			34822	6221	28658	28685	38271	38271					0.03619628874935188
LRLIKLSGTR	10	Unmodified	_LRLIKLSGTR_					0	0	0			REV__nc|ENSG00000167634|Q8WX94-2|NLRP7	REV__nc|ENSG00000167634|Q8WX94-2|NLRP7	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.8121948242188	2	578.879865	1155.74518	1.9576	0.0011332	4.0225	0.0023285	5.9801	0.0034617	578.8818457079848	84.115	0.21043	84.115	84.051	84.261	0					7	4	2	0	0	0	0.027118	1	8794	8794		32.812	15.447	1	128010	+		34823	21291	28659	28686	38272	38272					0.1735335083069458
LRLILNLQTRW	11	Unmodified	_LRLILNLQTRW_					0	0	0		ENST00000441775.1_1_1:84710041-84710257:+|nuORF	ENST00000441775.1_1_1:84710041-84710257:+|nuORF	ENST00000441775.1_1_1:84710041-84710257:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	475.9629211425781	3	475.961144	1424.8616	0.8114	0.00038619	-0.070942	-3.3766E-05	0.74046	0.00035243	475.961087785801	103.28	1.5158	103.28	102.93	104.45	0					104	35	5	0	0	0	0.72493	1	11549	11549		16.53	0	1	5443300			34824	11932	28660	28687	38273	38273					0.1661666933057404
LRLIRMFN	8	Unmodified	_LRLIRMFN_					0	0	0			REV__ENST00000368679.8_1_10:127702855-127703017:-|nuORF	REV__ENST00000368679.8_1_10:127702855-127703017:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	531.8165283203125	2	531.815679	1061.6168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.15	1	134.61	134.11	135.11	-1.5437								0	0	0	0.30129	1	13202	13202		26.796	3.7536	1		+		34825	24924	28661	28688	38274	38274					0.08846092315957321
LRLKECLE	8	Unmodified	_LRLKECLE_					0	0	0		ENST00000471370.5_1_12:58007928-58008279:+|nuORF	ENST00000471370.5_1_12:58007928-58008279:+|nuORF	ENST00000471370.5_1_12:58007928-58008279:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	502.28192138671875	2	502.283877	1002.5532	-0.91372	-0.00045895	-2.8432	-0.0014281	-3.7569	-0.001887	502.2823787976924	94.031	2.3002	92.931	92.592	94.892	-1.0995					89	45	5	0	0	0	0.53531	1	8424	8424		73.975	0	1	1036800			34826	12380	28662	28689	38275	38275					0.052026870882059484
LRLKLKKLEVF	11	Unmodified	_LRLKLKKLEVF_					0	0	0		tr|A0A7D6VPX7|A0A7D6VPX7_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18570PE=4SV=1	tr|A0A7D6VPX7|A0A7D6VPX7_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18570PE=4SV=1	tr|A0A7D6VPX7|A0A7D6VPX7_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18570PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	462.93695068359375	3	462.978024	1385.91224	0.092589	4.2867E-05	0.6559	0.00030367	0.74848	0.00034653	462.97803796778913	44.586	0.34755	41.876	41.752	42.099	-2.7097					8	6	2	0	0	0	0.026101	1	2565	2565		26.75	8.2187	1	8451.9			34827	34806	28663	28690	38276	38276					0.2347219865559964
LRLKQLLDV	9	Unmodified	_LRLKQLLDV_					0	0	0			REV__nc|ENSG00000272886|Q9NPI6-2|DCP1A	REV__nc|ENSG00000272886|Q9NPI6-2|DCP1A	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.8121337890625	2	549.355691	1096.69683	2.0896	0.0011479	-0.34753	-0.00019092	1.7421	0.00095702	549.3553321567853	93.92	0.7159	93.92	93.632	94.348	0					26	16	2	0	0	0	0.027462	1	10175	10175		47.657	6.8792	1	552170	+		34828	23616	28664	28691	38277	38277					0.15234857190785078
LRLLLKQGQ	9	Unmodified	_LRLLLKQGQ_					0	0	0		tr|A0A553SKL0|A0A553SKL0_NIACISporulationproteinYqfCOS=NialliacirculansOX=1397GN=yqfCPE=4SV=1	tr|A0A553SKL0|A0A553SKL0_NIACISporulationproteinYqfCOS=NialliacirculansOX=1397GN=yqfCPE=4SV=1	tr|A0A553SKL0|A0A553SKL0_NIACISporulationproteinYqfCOS=NialliacirculansOX=1397GN=yqfCPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	534.77783203125	2	534.848033	1067.68151	0.14986	8.0154E-05	0.48232	0.00025797	0.63218	0.00033812	534.8480201390655	75.864	0.25285	73.492	73.317	73.57	-2.3715					7	4	2	0	0	0	0.027462	1	3869	3869		30.504	0	1	12572			34829	33627	28665	28692	38278	38278					0.1503799039360274
LRLMRKAM	8	Unmodified	_LRLMRKAM_					0	0	0			REV__ENST00000261349.8_1_12:12397505-12397571:-|nuORF	REV__ENST00000261349.8_1_12:12397505-12397571:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	509.8038330078125	2	509.804257	1017.59396	-1.31	-0.00066782	0.17261	8.7996E-05	-1.1373	-0.00057982	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.75915	1	11325	11325		20.482	1.1219	1	99460	+		34830	23945	28666	28693	38279	38279					0.08586749926837456
LRLNKVLQVD	10	Unmodified	_LRLNKVLQVD_					0	0	0			REV__ENSG00000174529|ENST00000367167|TMEM81	REV__ENSG00000174529|ENST00000367167|TMEM81	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.8109130859375	2	599.36933	1196.72411	1.8432	0.0011048	2.6545	0.001591	4.4978	0.0026958	599.3704172383186	111.05	0.48782	111.05	110.85	111.33	0					14	10	2	0	0	0	0.027145	1	12636	12636		24.519	2.5593	1	180330	+		34831	21841	28667	28694	38280	38280					0.13361340731171367
LRLPHCLEV	9	Carbamidomethyl (C)	_LRLPHC(Carbamidomethyl (C))LEV_	LRLPHC(1)LEV		LRLPHC(71)LEV		0	1	0			REV__nc|ENSG00000120903|Q15822-2|CHRNA2	REV__nc|ENSG00000120903|Q15822-2|CHRNA2	MULTI-MSMS	OvCa99_classI_Rep5	1	568.8168334960938	2	568.815876	1135.6172	-0.52852	-0.00030063	3.8469	0.0021882	3.3184	0.0018876	568.8178724481593	28.962	0.59853	28.962	28.739	29.337	0					19	11	4	0	0	0	0.22961	1	984	984		71.296	9.1883	1	335660	+		34832	18522	28668	28695	38281	38281	202				0.054814672451584556
LRLPRVATTW	10	Unmodified	_LRLPRVATTW_					0	0	0			REV__ENSG00000100450|ENST00000216338|GZMH	REV__ENSG00000100450|ENST00000216338|GZMH	MULTI-MSMS	OvCa9_classI_Rep2	2	404.9105529785156	3	404.911902	1211.71388	0.97216	0.00039364	-4.2816	-0.0017337	-3.3095	-0.00134	404.9101904577938	58.692	1.0744	55.912	55.588	56.662	-2.7801					70	20	4	0	0	0	0.65849	1	4260	4260		35.152	3.5178	1	576540	+		34833	17419	28669	28696	38282	38282					0.11648777796585819
LRLQLERSI	9	Unmodified	_LRLQLERSI_					0	0	0		nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;ENST00000483412.5_1_9:123169248-123169542:-|nuORF	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.2664794921875	2	564.348397	1126.68224	2.2968	0.0012962	-0.0066427	-3.7488E-06	2.2902	0.0012925	564.3483424609269	90.6	1.4905	90.6	90.346	91.837	0					52	36	3	0	0	0	0.027295	1	9709	9709		74.255	0	1	1625100			34834	4524	28670	28697	38283	38283					0.12396785042665215
LRLQLPPL	8	Unmodified	_LRLQLPPL_					0	0	0		PTPRT|p.A752Gfs*77|1|0.29|ENSG00000196090|chr20:42248744-42248745|-/GGGAGCAGGGGAGGAGACAGGGTCTGGCTAGAAC|frameshift_variant;PTPRT|p.S834Ffs*21|1|0.38|ENSG00000196090|chr20:42161522-42161534|GCTCCCCGCGGCT/-|frameshift_variant;chr20:42199388-42248687|137|16.46|0.87|4.24|-|ENST00000373201|PTPRT,PTPRT;chr20:42161539-42199240|139|14.26|0.81|4.13|-|ENST00000373190|PTPRT,PTPRT;ENSG00000196090|ENST00000373187|PTPRT;chr20:42116098-42118403|125|12.59|0.57|4.46|-|ENST00000373184|PTPRT,PTPRT;chr20:42115315-42116039|128|12.88|0.61|4.4|-|ENST00000373184|PTPRT,PTPRT;nc|ENSG00000196090|O14522-1|PTPRT	PTPRT|p.A752Gfs*77|1|0.29|ENSG00000196090|chr20:42248744-42248745|-/GGGAGCAGGGGAGGAGACAGGGTCTGGCTAGAAC|frameshift_variant	PTPRT|p.A752Gfs*77|1|0.29|ENSG00000196090|chr20:42248744-42248745|-/GGGAGCAGGGGAGGAGACAGGGTCTGGCTAGAAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	475.3128356933594	2	475.313295	948.612037	0.97281	0.00046239	-1.2874	-0.00061192	-0.31459	-0.00014953	475.3125683333553	114.33	2.0434	113.27	112.84	114.88	-1.055					93	40	4	0	0	0	0.65582	1	8468	8468		52.299	0	1	307310			34835	454	28671	28698	38284	38284					0.1356753144484628
LRLQPISVTL	10	Unmodified	_LRLQPISVTL_					0	0	0		CYP11A1|p.H388Q|1|0.16|ENSG00000140459|chr15:74339309-74339309|G/T|missense_variant	CYP11A1|p.H388Q|1|0.16|ENSG00000140459|chr15:74339309-74339309|G/T|missense_variant	CYP11A1|p.H388Q|1|0.16|ENSG00000140459|chr15:74339309-74339309|G/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	570.3579711914062	2	570.360973	1138.70739	-4.2157	-0.0024045	0.51987	0.00029652	-3.6958	-0.002108	570.3611382746453	152.47	1.2391	152.25	151.83	153.07	-0.22697					66	25	4	0	0	0	0.7759	1	15508	15508		21.96	0	1	86072			34836	700	28672	28699	38285	38285					0.14358839845226612
LRLQRVAVAVM	11	Unmodified	_LRLQRVAVAVM_					0	0	0			REV__ENSG00000128917|ENST00000249749|DLL4	REV__ENSG00000128917|ENST00000249749|DLL4	MULTI-MSMS	OvCa9_classI_Rep3	3	628.3816528320312	2	628.387	1254.75945	-4.0511	-0.0025457	-3.0766	-0.0019333	-7.1277	-0.004479	628.3849132400738	150.53	4.7174	149.58	148	152.71	-0.95647					178	94	2	0	0	0	0.71929	1	12907	12907		23.042	4.7804	1	419100	+		34837	18878	28673	28700	38286	38286					0.14225679987316653
LRLRDLMAK	9	Unmodified	_LRLRDLMAK_					0	0	0			REV__tr|A0A7D6W035|A0A7D6W035_9CLOTGamma-glutamylphosphatereductaseOS=ClostridiumintestinaleOX=36845GN=proAPE=3SV=1	REV__tr|A0A7D6W035|A0A7D6W035_9CLOTGamma-glutamylphosphatereductaseOS=ClostridiumintestinaleOX=36845GN=proAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.7827758789062	2	558.339518	1114.66448	-0.046301	-2.5851E-05	0.46281	0.0002584	0.41651	0.00023255	558.3396526448684	49.236	0.29856	49.236	49.031	49.33	0					11	6	2	0	0	0	0.027462	1	3656	3656		39.253	15.73	1	180900	+		34838	31850	28674	28701	38287	38287					0.11173746516146821
LRLREIPD	8	Unmodified	_LRLREIPD_					0	0	0			REV__ENSG00000152611|ENST00000651391|CAPSL	REV__ENSG00000152611|ENST00000651391|CAPSL	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.3182373046875	2	506.300916	1010.58728	-0.67811	-0.00034333	-3.6892	-0.0018679	-4.3674	-0.0022112	506.7996096066452	59.233	0.52438	56.453	56.086	56.61	-2.7801					12	9	2	0	0	0	0.028476	1	4293	4293		82.305	13.82	1	18808	+		34839	20297	28675	28702	38288	38288					0.08240851571463281
LRLRPKAP	8	Unmodified	_LRLRPKAP_					0	0	0		ENSG00000137103|ENST00000643932|TMEM8B	ENSG00000137103|ENST00000643932|TMEM8B	ENSG00000137103|ENST00000643932|TMEM8B	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.78131103515625	2	475.816536	949.618519	-0.022343	-1.0631E-05	-2.5555	-0.001216	-2.5779	-0.0012266	475.81499569476046	114.13	0.73947	114.01	113.81	114.55	-0.11777					21	14	3	0	0	0	0.028476	1	10884	10884		20.482	11.66	1	20683			34840	4558	28676	28703	38289	38289					0.14169469396222212
LRLRRLQGTQG	11	Unmodified	_LRLRRLQGTQG_					0	0	0		nc|ENSG00000068971|Q15173-2|PPP2R5B;ENSG00000068971|ENST00000164133|PPP2R5B	nc|ENSG00000068971|Q15173-2|PPP2R5B	nc|ENSG00000068971|Q15173-2|PPP2R5B	MSMS	OvCa99_classI_Rep5	1	649.3885498046875	2	649.394202	1296.77385	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.8	1	121.8	121.3	122.3	0								0	0	0	0.19388	1	14019	14019		35.152	5.982	1				34841	1402	28677	28704	38290	38290					0.13733468459849973
LRLRRSMEE	9	Unmodified	_LRLRRSMEE_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MSMS	OvCa9_classI_Rep4_	4	595.3294067382812	2	595.327139	1188.63972	-0.17732	-0.00010556	3.324	0.0019789	3.1467	0.0018733	595.328871096538	94.892	1.5046	92.423	91.91	93.414	-2.4685					76	29	4	0	0	0	0.40667	1	8328	8328		51.335	1.7994	1	266530			34842	4634	28678	28705	38291	38291					0.05295066642770507
LRLRRSMEE	9	Unmodified	_LRLRRSMEE_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	595.327139	1188.63972	-0.23459	-0.00013966	3.2643	0.0019433	3.0297	0.0018037	595.3288583759166	94.205	1.6671	92.31	91.898	93.565	-1.8956	-0.056784	-4.5901E-05	NaN	51.335	74	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	301030			34843	4634	28678	28705							0.05295066642770507
LRLRRVHVCGG	11	Unmodified	_LRLRRVHVCGG_					0	0	0		ENSG00000116176|ENST00000234798|TPSG1	ENSG00000116176|ENST00000234798|TPSG1	ENSG00000116176|ENST00000234798|TPSG1	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3685913085938	2	633.372215	1264.72988	-4.5141	-0.0028591	-0.278	-0.00017608	-4.7921	-0.0030352	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.72505	1	15592	15592		14.865	0.72775	1	369460			34844	3161	28679	28706	38292	38292					0.1081016076184369
LRLSAKPASE	10	Unmodified	_LRLSAKPASE_					0	0	0			REV__ENSG00000076003|ENST00000264156|MCM6	REV__ENSG00000076003|ENST00000264156|MCM6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.2940673828125	2	536.31148	1070.60841	-2.1088	-0.001131	-0.67304	-0.00036096	-2.7819	-0.001492	536.310786379142	72.412	1.0219	69.016	68.618	69.64	-3.3961					29	20	2	0	0	0	0.026891	1	5559	5559		39.253	0	1	61931	+		34845	16983	28680	28707	38293	38293					0.07592816880310238
LRLSVLPAR	9	Unmodified	_LRLSVLPAR_					0	0	0		ENST00000566861.5_1_15:82555267-82555765:+|nuORF	ENST00000566861.5_1_15:82555267-82555765:+|nuORF	ENST00000566861.5_1_15:82555267-82555765:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.3145141601562	2	512.834926	1023.6553	2.439	0.0012508	-3.6898	-0.0018923	-1.2509	-0.00064148	512.8329303077729	96.007	0.84119	96.007	95.577	96.418	0					40	19	3	0	0	0	0.027462	1	10460	10460		31.53	20.019	1	522480			34846	13853	28681	28708	38294	38294					0.14441721222135584
LRLTHKGS	8	Unmodified	_LRLTHKGS_					0	0	0			REV__tr|A0A553SUQ7|A0A553SUQ7_NIACIPLP-dependentaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05750PE=3SV=1	REV__tr|A0A553SUQ7|A0A553SUQ7_NIACIPLP-dependentaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05750PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	456.27838134765625	2	456.274701	910.534849	2.5917	0.0011825	4.1975	0.0019152	6.7892	0.0030978	456.2764434371543	121.68	0.46727	121.68	121.47	121.94	0					19	9	3	0	0	0	0.7224	1	14001	14001		38.806	3.6054	1	215690	+		34847	31110	28682	28709	38295	38295					0.07600313228522282
LRLTLWPPR	9	Unmodified	_LRLTLWPPR_					0	0	0		ENST00000538682.5_1_11:62649445-62650469:+|nuORF	ENST00000538682.5_1_11:62649445-62650469:+|nuORF	ENST00000538682.5_1_11:62649445-62650469:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	576.35400390625	2	576.356025	1150.6975	-0.29031	-0.00016732	-4.0567	-0.0023381	-4.347	-0.0025054	576.3537371528553	71.759	4.075	69.252	68.91	72.985	-2.5071					188	77	5	0	0	0	0.24951	1	5793	5793		68.787	6.6794	1	5146300			34848	13424	28683	28710	38296	38296					0.1281769663050909
LRLTLWPPR	9	Unmodified	_LRLTLWPPR_					0	0	0		ENST00000538682.5_1_11:62649445-62650469:+|nuORF	ENST00000538682.5_1_11:62649445-62650469:+|nuORF	ENST00000538682.5_1_11:62649445-62650469:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	576.3535766601562	2	576.356025	1150.6975	-0.5103	-0.00029411	-3.9868	-0.0022978	-4.4971	-0.0025919	576.3538085628105	72.001	4.4609	69.399	69.081	73.542	-2.6023					248	89	5	0	0	0	0.21231	1	3395	3395		74.255	7.8258	1	7516400			34849	13424	28683	28710	38297	38297					0.1281769663050909
LRLTVLPAL	9	Unmodified	_LRLTVLPAL_					0	0	0		SLC2A4|p.G207R|1|0.18|ENSG00000181856|chr17:7284271-7284271|G/C|missense_variant	SLC2A4|p.G207R|1|0.18|ENSG00000181856|chr17:7284271-7284271|G/C|missense_variant	SLC2A4|p.G207R|1|0.18|ENSG00000181856|chr17:7284271-7284271|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3338317871094	2	498.334227	994.653902	0.034655	1.727E-05	-0.51496	-0.00025662	-0.48031	-0.00023935	498.3339335091273	123.54	3.2541	123.31	122.99	126.25	-0.23193					175	65	5	0	0	0	0.62352	1	12139	12139		29.15	0	1	3004600			34850	32829	28684	28711	38298	38298					0.15636087133361798
LRLVAGPLVL	10	Unmodified	_LRLVAGPLVL_					0	0	0		nc|ENSG00000204385|Q53GD3-3|SLC44A4;nc|ENSG00000204385|Q53GD3-4|SLC44A4;ENSG00000204385|ENST00000229729|SLC44A4	nc|ENSG00000204385|Q53GD3-3|SLC44A4	nc|ENSG00000204385|Q53GD3-3|SLC44A4	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.8548583984375	2	525.855327	1049.6961	-0.17376	-9.1372E-05	-0.049096	-2.5818E-05	-0.22285	-0.00011719	525.8551418394103	128.56	1.8468	127.1	126.69	128.53	-1.4565					98	36	4	0	0	0	0.65434	1	12318	12318		35.618	1.4457	1	322380			34851	8977	28685	28712	38299	38299					0.17324062541752028
LRLVPVVM	8	Unmodified	_LRLVPVVM_					0	0	0		ENST00000232496.4_1_3:50362630-50362750:-|nuORF	ENST00000232496.4_1_3:50362630-50362750:-|nuORF	ENST00000232496.4_1_3:50362630-50362750:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	463.7979736328125	2	463.796423	925.578294	0.21037	9.7568E-05	3.1309	0.0014521	3.3413	0.0015497	463.7978667804196	70.561	4.2201	67.99	67.714	71.934	-2.5707					173	80	4	0	0	0	0.74013	1	5673	5673		31.579	0	1	2590100			34852	9727	28686	28713	38300	38300					0.1125278668143892
LRLVPVVM	8	Unmodified	_LRLVPVVM_					0	0	0		ENST00000232496.4_1_3:50362630-50362750:-|nuORF	ENST00000232496.4_1_3:50362630-50362750:-|nuORF	ENST00000232496.4_1_3:50362630-50362750:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	463.7979431152344	2	463.796423	925.578294	0.29403	0.00013637	3.2747	0.0015188	3.5687	0.0016552	463.7979721487958	70.79	6.0908	68.07	67.699	73.79	-2.7196					279	121	5	0	0	0	0.74361	1	3337	3337		29.842	0	1	3593600			34853	9727	28686	28713	38301	38301					0.1125278668143892
LRLYDQHI	8	Unmodified	_LRLYDQHI_					0	0	0		ENSG00000109654|ENST00000338700|TRIM2;nc|ENSG00000109654|Q9C040|TRIM2;TRIM2|p.G665Efs*11|1|0.47|ENSG00000109654|chr4:153328581-153328581|G/-|frameshift_variant	ENSG00000109654|ENST00000338700|TRIM2	ENSG00000109654|ENST00000338700|TRIM2	MULTI-MSMS	OvCa99_classI_Rep5	1	529.2979125976562	2	529.293091	1056.57163	-0.086405	-4.5734E-05	3.6917	0.001954	3.6053	0.0019083	529.2948863215572	71.392	2.0869	71.392	71.068	73.155	0					112	51	3	0	0	0	0.58851	1	6894	6894		66.429	9.7082	1	4289100			34854	2721	28687	28714	38302	38302					0.04560565054430299
LRMHCVSAL	9	Unmodified	_LRMHCVSAL_					0	0	0		ENST00000557103.5_1_14:52042403-52042616:+|nuORF	ENST00000557103.5_1_14:52042403-52042616:+|nuORF	ENST00000557103.5_1_14:52042403-52042616:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.270263671875	2	515.270247	1028.52594	-0.70883	-0.00036524	4.1175	0.0021216	3.4087	0.0017564	515.2720635247201	103.8	1.6233	101.68	101.22	102.85	-2.1192					75	30	4	0	0	0	0.22961	1	9378	9378		71.296	7.9894	1	335500			34855	13680	28688	28715	38303	38303					0.01281880276155789
LRMHLAGH	8	Unmodified	_LRMHLAGH_					0	0	0		RFC2-LIMK1|1|fusion;nc|ENSG00000106683|P53667-4|LIMK1;nc|ENSG00000106683|P53667-2|LIMK1;ENSG00000106683|ENST00000336180|LIMK1	RFC2-LIMK1|1|fusion	RFC2-LIMK1|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.23699951171875	2	467.755621	933.49669	-0.12142	-5.6796E-05	-4.1835	-0.0019568	-4.3049	-0.0020136	467.75362158702006	41.007	0.35831	41.007	40.881	41.24	0					10	7	2	0	0	0	0.028476	1	2552	2552		20.482	0	1	37287			34856	2571	28689	28716	38304	38304					0.027281040422053593
LRMILSIPS	9	Unmodified	_LRMILSIPS_					0	0	0		L1M3_dup291|chr1:173794566-173795729:+|1.281363593639287|0.3648644439828962|1.81|429.0|74|2|anti-sense	L1M3_dup291|chr1:173794566-173795729:+|1.281363593639287|0.3648644439828962|1.81|429.0|74|2|anti-sense	L1M3_dup291|chr1:173794566-173795729:+|1.281363593639287|0.3648644439828962|1.81|429.0|74|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.3114013671875	2	515.309895	1028.60524	0.67052	0.00034553	2.3918	0.0012325	3.0623	0.001578	515.3111559710834	35.314	1.6978	32.465	32.19	33.887	-2.849					108	33	5	0	0	0	0.24951	1	1117	1117		68.787	7.8149	1	2437400			34857	14553	28690	28717	38305	38305					0.0920785050197992
LRMLLLLW	8	Unmodified	_LRMLLLLW_					0	0	0		ENST00000532554.5_1_11:45935680-45939362:-|nuORF;ENSG00000121680|ENST00000378750|PEX16;nc|ENSG00000121680|Q9Y5Y5-2|PEX16	ENST00000532554.5_1_11:45935680-45939362:-|nuORF	ENST00000532554.5_1_11:45935680-45939362:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.80419921875	2	529.333173	1056.65179	1.9745	0.0010452	3.4565	0.0018297	5.4311	0.0028748	529.3350006131034	77.459	0.58725	77.459	77.085	77.672	0					20	13	2	0	0	0	0.028476	1	7789	7789		44.531	21.951	1	327100			34858	3493	28691	28718	38306	38306					0.12573335123920515
LRMTQIEL	8	Unmodified	_LRMTQIEL_					0	0	0		tr|A0A553SPA5|A0A553SPA5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_25870PE=4SV=1	tr|A0A553SPA5|A0A553SPA5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_25870PE=4SV=1	tr|A0A553SPA5|A0A553SPA5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_25870PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	502.28167724609375	2	502.283877	1002.5532	-0.91372	-0.00045895	-2.8432	-0.0014281	-3.7569	-0.001887	502.2823787976924	94.031	2.3002	92.931	92.592	94.892	-1.0995					89	45	5	0	0	0	0.34187	1	8405	8405		99.375	11.679	1	1036800			34859	34023	28692	28719	38307	38307					0.0520268708819458
LRMTQIEL	8	Unmodified	_LRMTQIEL_					0	0	0		tr|A0A553SPA5|A0A553SPA5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_25870PE=4SV=1	tr|A0A553SPA5|A0A553SPA5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_25870PE=4SV=1	tr|A0A553SPA5|A0A553SPA5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_25870PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	502.2833557128906	2	502.283877	1002.5532	-0.90353	-0.00045383	-2.6919	-0.0013521	-3.5954	-0.0018059	502.28234158523946	94.835	2.2552	92.939	92.662	94.917	-1.8956					108	44	3	0	0	0	0.34187	3	6145	6145;6149;6155		99.375	17.07	1	1463600			34860	34023	28692	28719	38308;38309;38310	38308					0.0520268708819458
LRMTQIEL	8	Unmodified	_LRMTQIEL_					0	0	0		tr|A0A553SPA5|A0A553SPA5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_25870PE=4SV=1	tr|A0A553SPA5|A0A553SPA5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_25870PE=4SV=1	tr|A0A553SPA5|A0A553SPA5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_25870PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.2831115722656	2	502.283877	1002.5532	-1.6194	-0.00081338	-2.0497	-0.0010295	-3.6691	-0.0018429	502.2826598778731	95.456	2.0076	92.988	92.711	94.718	-2.4685					104	39	4	0	0	0	0.40148	3	8414	8391;8414;8440		87.754	13.518	1	1323100			34861	34023	28692	28719	38311;38312;38313	38312					0.0520268708819458
LRMTQIEL	8	Unmodified	_LRMTQIEL_					0	0	0		tr|A0A553SPA5|A0A553SPA5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_25870PE=4SV=1	tr|A0A553SPA5|A0A553SPA5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_25870PE=4SV=1	tr|A0A553SPA5|A0A553SPA5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_25870PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	502.283877	1002.5532	1.888	0.00094831	-2.8901	-0.0014517	-1.0021	-0.00050334	502.28215573541524	92.989	0.45958	92.989	92.803	93.263	0	0.027191	-0.00028456	NaN	99.375	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	458640			34862	34023	28692	28719							0.0520268708819458
LRNALIPSI	9	Unmodified	_LRNALIPSI_					0	0	0		tr|A0A553SUI6|A0A553SUI6_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_06995PE=3SV=1	tr|A0A553SUI6|A0A553SUI6_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_06995PE=3SV=1	tr|A0A553SUI6|A0A553SUI6_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_06995PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	498.8145751953125	2	498.813659	995.612765	2.4739	0.001234	0.13969	6.9681E-05	2.6136	0.0013037	498.81364884021804	98.886	0.9333	98.886	98.596	99.529	0					36	22	3	0	0	0	0.074342	1	10903	10903		104.75	0	1	1958100			34863	34614	28693	28720	38314	38314					0.11478326093913438
LRNEIKTL	8	Unmodified	_LRNEIKTL_					0	0	0		APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB;APOB|p.N3224Tfs*50|1|0.31|ENSG00000084674|chr2:21007197-21007198|-/CTTCTTCATATTCTGCACTGAAG|frameshift_variant	APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant	APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	493.8037414550781	2	493.803291	985.59203	-0.072185	-3.5645E-05	0.034712	1.7141E-05	-0.037473	-1.8504E-05	493.80316854468964	72.345	1.8838	69.743	69.472	71.356	-2.6023					88	37	4	0	0	0	0.50747	1	3440	3440		76.774	2.7994	1	629620			34864	102	28694	28721	38315	38315					0.09865735714254242
LRNEIKTL	8	Unmodified	_LRNEIKTL_					0	0	0		APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB;APOB|p.N3224Tfs*50|1|0.31|ENSG00000084674|chr2:21007197-21007198|-/CTTCTTCATATTCTGCACTGAAG|frameshift_variant	APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant	APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	493.803291	985.59203	0.61123	0.00030183	-0.74834	-0.00036953	-0.1371	-6.7703E-05	493.80272737640706	72.262	1.8288	69.755	69.381	71.209	-2.5071	-0.12023	-0.00046449	NaN	76.774	79	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	341240			34865	102	28694	28721							0.09865735714254242
LRNEIKTL	8	Unmodified	_LRNEIKTL_					0	0	0		APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB;APOB|p.N3224Tfs*50|1|0.31|ENSG00000084674|chr2:21007197-21007198|-/CTTCTTCATATTCTGCACTGAAG|frameshift_variant	APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant	APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	493.803291	985.59203	-0.69696	-0.00034416	-0.060789	-3.0018E-05	-0.75775	-0.00037418	493.80311249658746	73.523	1.5334	70.127	69.833	71.366	-3.3961	0.25199	0.00021453	NaN	76.774	65	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	480400			34866	102	28694	28721							0.09865735714254242
LRNEKEQEL	9	Unmodified	_LRNEKEQEL_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	ENSG00000131747|ENST00000423485|TOP2A	MULTI-MSMS	OvCa99_classI_Rep5	1	579.8096923828125	2	579.809302	1157.60405	-1.1991	-0.00069527	1.3201	0.00076541	0.12097	7.0141E-05	579.8102527382174	34.937	0.377	34.937	34.772	35.149	0					18	7	4	0	0	0	0.29519	1	1729	1729		63.534	12.341	1	272910			34867	4088	28695	28722	38316	38316					0.03155307666770568
LRNFQLSL	8	Unmodified	_LRNFQLSL_					0	0	0			REV__chr12:49891114-49891660|239|14.54|0.17|6.43|-|1|TE_info:L2c,L2c_dup102511,L2,LINE,donor,+,49891660,49891765|FAIM2,None|1	REV__chr12:49891114-49891660|239|14.54|0.17|6.43|-|1|TE_info:L2c,L2c_dup102511,L2,LINE,donor,+,49891660,49891765|FAIM2,None|1	MSMS	OvCa99_classI_Rep5	1	495.79449462890625	2	495.790184	989.565815	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.006	1	53.006	52.506	53.506	0								0	0	0	0.30129	1	4189	4189		76.847	2.8719	1		+		34868	15881	28696	28723	38317	38317					0.0706146654274562
LRNINNAI	8	Unmodified	_LRNINNAI_					0	0	0			REV__tr|A0A553SUP2|A0A553SUP2_NIACIUvrABCsystemproteinAOS=NialliacirculansOX=1397GN=CEQ21_04190PE=3SV=1	REV__tr|A0A553SUP2|A0A553SUP2_NIACIUvrABCsystemproteinAOS=NialliacirculansOX=1397GN=CEQ21_04190PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	464.27215576171875	2	464.272158	926.529764	-0.4234	-0.00019657	0.31242	0.00014505	-0.11097	-5.1522E-05	464.2721365905032	21.345	0.90516	20.006	19.77	20.675	-1.3386					25	17	2	0	0	0	0.69415	1	166	166		44.531	16.277	1	47232	+		34869	31103	28697	28724	38318	38318					0.06356009365879345
LRNIPFLV	8	Unmodified	_LRNIPFLV_					0	0	0		tr|A0A553SHS2|A0A553SHS2_NIACIPhosphonateABCtransporter,permeaseproteinPhnEOS=NialliacirculansOX=1397GN=phnEPE=3SV=1	tr|A0A553SHS2|A0A553SHS2_NIACIPhosphonateABCtransporter,permeaseproteinPhnEOS=NialliacirculansOX=1397GN=phnEPE=3SV=1	tr|A0A553SHS2|A0A553SHS2_NIACIPhosphonateABCtransporter,permeaseproteinPhnEOS=NialliacirculansOX=1397GN=phnEPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.30474853515625	2	486.30547	970.596387	0.78572	0.0003821	-1.2488	-0.0006073	-0.46308	-0.0002252	486.30477333878326	121.54	2.2543	120.51	120.01	122.27	-1.0286					108	42	4	0	0	0	0.73288	1	9310	9310		35.201	1.0282	1	892460			34870	33303	28698	28725	38319	38319					0.10991244927788557
LRNLLIRQKT	10	Unmodified	_LRNLLIRQKT_					0	0	0		ENST00000519124.5_1_8:124358861-124358921:-|nuORF	ENST00000519124.5_1_8:124358861-124358921:-|nuORF	ENST00000519124.5_1_8:124358861-124358921:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	418.9267578125	3	418.93834	1253.79319	-0.88751	-0.00037181	3.9866	0.0016701	3.0991	0.0012983	418.9399101656162	104.13	0.31475	102.01	101.85	102.17	-2.1192					6	5	2	0	0	0	0.027214	1	9401	9401		7.0187	0	1	11086			34871	13081	28699	28726	38320	38320					0.17644424750733378
LRNLQTVLH	9	Unmodified	_LRNLQTVLH_					0	0	0		L1MA1_dup882|chr3:174894625-174897831:+|1.387705056550523|0.3345806313734131|2.05|429.0|104|1|anti-sense	L1MA1_dup882|chr3:174894625-174897831:+|1.387705056550523|0.3345806313734131|2.05|429.0|104|1|anti-sense	L1MA1_dup882|chr3:174894625-174897831:+|1.387705056550523|0.3345806313734131|2.05|429.0|104|1|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	547.3300170898438	2	547.327465	1092.64038	-0.5311	-0.00029069	-0.3269	-0.00017892	-0.85801	-0.00046961	547.3271242122657	63.586	2.4189	63.586	62.253	64.672	0					181	59	4	0	0	0	0.10363	1	5837	5837		96.19	3.0472	1	4975300			34872	14568	28700	28727	38321	38321					0.0977622935411091
LRNMPLVLA	9	Unmodified	_LRNMPLVLA_					0	0	0		ENST00000447767.1_1_20:57099243-57099402:+|nuORF	ENST00000447767.1_1_20:57099243-57099402:+|nuORF	ENST00000447767.1_1_20:57099243-57099402:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.8260498046875	2	513.810062	1025.60557	-0.10683	-5.4893E-05	1.5657	0.00080449	1.4589	0.0007496	513.8110394303176	78.72	0.13869	75.969	75.899	76.038	-2.7514					4	2	2	0	0	0	0.027462	1	6351	6351		25.45	0	1	19993			34873	12011	28701	28728	38322	38322					0.09379270221802471
LRNMPLVLA	9	Unmodified	_LRNMPLVLA_					0	0	0		ENST00000447767.1_1_20:57099243-57099402:+|nuORF	ENST00000447767.1_1_20:57099243-57099402:+|nuORF	ENST00000447767.1_1_20:57099243-57099402:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	513.810062	1025.60557	-0.24391	-0.00012532	-3.6113	-0.0018555	-3.8552	-0.0019808	513.8080903366806	78.128	0.25456	75.775	75.596	75.85	-2.3527	-0.096944	-0.0015627	NaN	25.45	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7102.6			34874	12011	28701	28728							0.09379270221802471
LRNNKLNQL	9	Unmodified	_LRNNKLNQL_					0	0	0		nc|ENSG00000103544|Q7Z3J2-2|VPS35L;ENSG00000103544|ENST00000417362|VPS35L;ENST00000566850.1_1_16:19710790-19711795:+|nuORF	nc|ENSG00000103544|Q7Z3J2-2|VPS35L	nc|ENSG00000103544|Q7Z3J2-2|VPS35L	MULTI-MSMS	OvCa99_classI_Rep5	1	556.829833984375	2	556.830372	1111.64619	-0.57085	-0.00031787	-0.039917	-2.2227E-05	-0.61077	-0.00034009	556.8302540312752	44.282	0.75656	44.282	44.038	44.795	0					34	16	3	0	0	0	0.19716	1	2983	2983		76.847	18.065	1	1297400			34875	2328	28702	28729	38323	38323					0.0948332786579158
LRNPKPGN	8	Unmodified	_LRNPKPGN_					0	0	0		ENST00000368874.8_2_1:151264931-151265267:-|nuORF	ENST00000368874.8_2_1:151264931-151265267:-|nuORF	ENST00000368874.8_2_1:151264931-151265267:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	448.2588195800781	2	448.259051	894.503549	0.91253	0.00040905	-0.89413	-0.0004008	0.018403	8.2495E-06	448.25856617736815	142.24	1.5311	142.01	141.52	143.05	-0.22696					82	30	4	0	0	0	0.7549	1	14249	14249		24.203	2.2429	1	131560			34876	10884	28703	28730	38324	38324					0.05207740194418875
LRNRLAQLR	9	Unmodified	_LRNRLAQLR_					0	0	0		ENSG00000196526|ENST00000420658|AFAP1;ENST00000513842.1_1_4:7765494-7800689:-|nuORF;nc|ENSG00000196526|Q8N556|AFAP1;ENST00000505447.5_1_4:7765494-7780765:-|nuORF	ENSG00000196526|ENST00000420658|AFAP1	ENSG00000196526|ENST00000420658|AFAP1	MULTI-MSMS	OvCa9_classI_Rep2	2	570.3583374023438	2	570.359631	1138.70471	-4.2157	-0.0024045	2.874	0.0016392	-1.3418	-0.00076528	570.3611382746453	152.47	1.2391	152.25	151.83	153.07	-0.22697					66	25	4	0	0	0	0.7044	1	15484	15484		16.473	3.0191	1	86072			34877	8620	28704	28731	38325	38325					0.14090429230896007
LRNVIPSFN	9	Unmodified	_LRNVIPSFN_					0	0	0		ENSG00000172238|ENST00000306011|ATOH1	ENSG00000172238|ENST00000306011|ATOH1	ENSG00000172238|ENST00000306011|ATOH1	MULTI-MSMS	OvCa99_classI_Rep5	1	530.2994995117188	2	530.300916	1058.58728	1.4586	0.00077352	0.15757	8.3557E-05	1.6162	0.00085707	530.3009635663805	109.11	0.92545	109.11	108.85	109.77	0					37	20	3	0	0	0	0.33652	1	12374	12374		58.782	2.0609	1	1364100			34878	7279	28705	28732	38326	38326					0.0603285157146729
LRNVSVLLL	9	Unmodified	_LRNVSVLLL_					0	0	0		ENSG00000136114|ENST00000258613|THSD1;nc|ENSG00000136114|Q9NS62-2|THSD1;nc|ENSG00000136114|Q9NS62-3|THSD1	ENSG00000136114|ENST00000258613|THSD1	ENSG00000136114|ENST00000258613|THSD1	MULTI-MSMS	OvCa99_classI_Rep5	1	513.8330078125	2	513.837134	1025.65972	2.9212	0.001501	-0.96173	-0.00049417	1.9594	0.0010068	513.8364987763683	97.335	0.98666	97.335	97.05	98.037	0					61	22	4	0	0	0	0.091859	1	10680	10680		99.375	17.134	1	7783800			34879	4459	28706	28733	38327	38327					0.14791185645049154
LRNVVNLTL	9	Unmodified	_LRNVVNLTL_					0	0	0			REV__TRRAP|p.Q3700Cfs*14|1|0.37|ENSG00000196367|chr7:99011251-99011252|-/GTGCGTTAAATCTGTCACCAGAA|frameshift_variant	REV__TRRAP|p.Q3700Cfs*14|1|0.37|ENSG00000196367|chr7:99011251-99011252|-/GTGCGTTAAATCTGTCACCAGAA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	521.3233642578125	2	521.324391	1040.63423	1.5317	0.00079852	3.725	0.0019419	5.2567	0.0027405	521.3262138874225	137.62	0.85703	137.62	137.3	138.16	0					35	18	2	0	0	0	0.42576	1	16050	16050		49.536	4.5138	1	478660	+		34880	22817	28707	28734	38328	38328					0.11553711122587629
LRNWHPPPPL	10	Unmodified	_LRNWHPPPPL_					0	0	0			REV__ENST00000515355.5_1_5:32586514-32588623:+|nuORF	REV__ENST00000515355.5_1_5:32586514-32588623:+|nuORF	MSMS	OvCa9_classI_Rep3	3	613.84326171875	2	613.843282	1225.67201	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.666	1	58.597	58.097	59.097	-3.0685								0	0	0	0.14592	1	2172	2172		16.473	0.83134	1		+		34881	26832	28708	28735	38329	38329					0.06820222108080998
LRPEPPKTR	9	Unmodified	_LRPEPPKTR_					0	0	0		ENSG00000189132|ENST00000329357|FAM47B;ENSG00000198173|ENST00000358047|FAM47C	ENSG00000189132|ENST00000329357|FAM47B;ENSG00000198173|ENST00000358047|FAM47C	ENSG00000198173|ENST00000358047|FAM47C	MULTI-MSMS	OvCa99_classI_Rep5	1	547.329345703125	2	547.327465	1092.64038	-0.5311	-0.00029069	-0.3269	-0.00017892	-0.85801	-0.00046961	547.3271242122657	63.586	2.4189	63.586	62.253	64.672	0					181	59	4	0	0	0	0.083631	1	5746	5746		101.6	5.7855	1	4975300			34882	8537;8792	28709	28736	38330	38330					0.0977622935411091
LRPFAACG	8	Unmodified	_LRPFAACG_					0	0	0		ENST00000323853.9_1_2:96971165-96971240:-|nuORF	ENST00000323853.9_1_2:96971165-96971240:-|nuORF	ENST00000323853.9_1_2:96971165-96971240:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	417.7183837890625	2	417.718173	833.421793	1.5603	0.00065178	-3.4728	-0.0014507	-1.9125	-0.00079888	417.7165732909185	155.81	4.0147	155.81	153.69	157.7	0					162	79	3	0	0	0	0.75991	1	18151	18151		21.702	4.9974	1	421790			34883	10394	28710	28737	38331	38331					-0.0015807848903932609
LRPGKPLHH	9	Unmodified	_LRPGKPLHH_					0	0	0		ENST00000474013.1_1_7:99971734-99973868:+|nuORF	ENST00000474013.1_1_7:99971734-99973868:+|nuORF	ENST00000474013.1_1_7:99971734-99973868:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	527.8181762695312	2	527.817067	1053.61958	0.15404	8.1304E-05	2.4095	0.0012718	2.5636	0.0013531	527.8180746611931	131.65	2.3091	131.42	131.15	133.46	-0.22696					124	46	4	0	0	0	0.53957	1	13033	13033		38.806	12.01	1	610490			34884	12423	28711	28738	38332	38332					0.09491683765122616
LRPGKPLHH	9	Unmodified	_LRPGKPLHH_					0	0	0		ENST00000474013.1_1_7:99971734-99973868:+|nuORF	ENST00000474013.1_1_7:99971734-99973868:+|nuORF	ENST00000474013.1_1_7:99971734-99973868:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.81787109375	2	527.817067	1053.61958	2.908	0.0015349	-0.79996	-0.00042223	2.1081	0.0011127	527.8164130855859	133.06	2.3118	131.53	131.12	133.43	-1.5238					88	45	3	0	0	0	0.53957	1	12885	12885		38.806	0.99462	1	542020			34885	12423	28711	28738	38333	38333					0.09491683765122616
LRPGQGRLRIL	11	Unmodified	_LRPGQGRLRIL_					0	0	0			REV__nc|ENSG00000290676|Q6UXR4|SERPINA13P	REV__nc|ENSG00000290676|Q6UXR4|SERPINA13P	MULTI-MSMS	OvCa9_classI_Rep3	3	426.9428405761719	3	426.942084	1277.80442	0.74077	0.00031627	-1.3177	-0.00056258	-0.57694	-0.00024632	426.94149785984115	79.39	2.4757	77.05	76.514	78.99	-2.3399					139	48	4	0	0	0	0.69735	2	4298	4292;4298		30.569	0	1	472050	+		34886	29215	28712	28739	38334;38335	38335					0.1766324684490428
LRPGRRLF	8	Unmodified	_LRPGRRLF_					0	0	0		ENST00000530529.5_1_11:108357029-108357155:-|nuORF	ENST00000530529.5_1_11:108357029-108357155:-|nuORF	ENST00000530529.5_1_11:108357029-108357155:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.81707763671875	2	507.81961	1013.62467	-0.43599	-0.0002214	-2.2537	-0.0011445	-2.6897	-0.0013659	507.81899285708454	76.343	0.42245	73.404	73.222	73.645	-2.9389					11	8	2	0	0	0	0.028476	1	6057	6057		20.482	0	1	35158			34887	13290	28713	28740	38336	38336					0.1183998762775218
LRPGWKNPI	9	Unmodified	_LRPGWKNPI_					0	0	0			REV__ENSG00000188112|ENST00000341865|C6orf132	REV__ENSG00000188112|ENST00000341865|C6orf132	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.2412109375	2	540.819276	1079.624	-0.1574	-8.5123E-05	-3.0209	-0.0016338	-3.1783	-0.0017189	540.8172069208334	30.201	0.49699	30.201	29.986	30.483	0					15	9	2	0	0	0	0.027462	1	1129	1129		30.504	0	1	61980	+		34888	22691	28714	28741	38337	38337					0.08737148188038191
LRPIYVGSR	9	Unmodified	_LRPIYVGSR_					0	0	0			REV__GAS2L2|p.V668Wfs*42|1|0.05|ENSG00000270765|chr17:35745496-35745496|T/-|frameshift_variant	REV__GAS2L2|p.V668Wfs*42|1|0.05|ENSG00000270765|chr17:35745496-35745496|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	530.8165893554688	2	530.816733	1059.61891	0.30148	0.00016003	-0.49755	-0.00026411	-0.19606	-0.00010407	530.816354509631	72.1	2.7704	69.497	69.18	71.951	-2.6023					121	55	4	0	0	0	0.48047	1	3409	3409		44.377	3.599	1	935120	+		34889	23606	28715	28742	38338	38338					0.091488443254093
LRPKASYSL	9	Unmodified	_LRPKASYSL_					0	0	0		ENSG00000198967|ENST00000641002|OR10Z1	ENSG00000198967|ENST00000641002|OR10Z1	ENSG00000198967|ENST00000641002|OR10Z1	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.8042602539062	2	517.803291	1033.59203	-0.79554	-0.00041194	0.29442	0.00015245	-0.50112	-0.00025948	517.8033999903365	69.26	1.6616	65.778	65.371	67.032	-3.4812					68	33	3	0	0	0	0.31747	1	5171	5171		60.972	8.6728	1	311700			34890	8920	28716	28743	38339	38339					0.07657735714224145
LRPLDRVPK	9	Unmodified	_LRPLDRVPK_					0	0	0			REV__ENST00000529689.5_1_11:82997014-82997215:-|nuORF	REV__ENST00000529689.5_1_11:82997014-82997215:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	547.3471069335938	2	547.345658	1092.67676	2.3748	0.0012999	-0.94421	-0.00051681	1.4306	0.00078305	547.345010964783	89.038	0.83818	89.038	88.803	89.641	0					36	20	2	0	0	0	0.53483	1	9500	9500		39.253	7.723	1	1324800	+		34891	27195	28717	28744	38340	38340					0.13413106250845885
LRPLKLSLM	9	Oxidation (M)	_LRPLKLSLM(Oxidation (M))_		LRPLKLSLM(1)		LRPLKLSLM(62)	0	0	1			REV__ENSG00000137819|ENST00000395407|PAQR5	REV__ENSG00000137819|ENST00000395407|PAQR5	MULTI-MSMS	OvCa99_classI_Rep5	1	543.8377075195312	2	543.83882	1085.66309	1.8911	0.0010285	-2.5512	-0.0013874	-0.66006	-0.00035897	543.8371630930505	122.36	1.2423	122.36	121.99	123.23	0					53	26	3	0	0	0	0.3076	1	14074	14074		62.107	7.3311	1	712810	+		34892	19482	28718	28745	38341	38341		446			0.12368112427384403
LRPLPILLV	9	Unmodified	_LRPLPILLV_					0	0	0		ENST00000460723.5_1_22:32017538-32058194:-|nuORF;ENSG00000241878|ENST00000439502|PISD	ENST00000460723.5_1_22:32017538-32058194:-|nuORF	ENST00000460723.5_1_22:32017538-32058194:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3595581054688	2	517.360245	1032.70594	0.038556	1.9947E-05	-0.44941	-0.00023251	-0.41085	-0.00021256	517.3599133873521	135.24	1.9126	135.01	134.59	136.5	-0.22696					104	38	4	0	0	0	0.53957	1	13438	13438		38.806	6.8513	1	602160			34893	9357	28719	28746	38342	38342					0.1908925054710835
LRPLVPLIL	9	Unmodified	_LRPLVPLIL_					0	0	0			REV__ENSG00000148153|ENST00000374242|INIP	REV__ENSG00000148153|ENST00000374242|INIP	MULTI-MSMS	OvCa9_classI_Rep3	3	517.3598022460938	2	517.360245	1032.70594	-0.63272	-0.00032734	0.17774	9.1954E-05	-0.45498	-0.00023539	517.3601946717101	136.63	2.1947	135.53	135.15	137.35	-1.1023					115	44	4	0	0	0	0.36502	1	11158	11158		55.504	0	1	468020	+		34894	20091	28720	28747	38343	38343					0.19089250547131087
LRPLVTLGRDR	11	Unmodified	_LRPLVTLGRDR_					0	0	0			REV__ENST00000404284.6_1_22:35717823-35727385:+|nuORF	REV__ENST00000404284.6_1_22:35717823-35727385:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	433.2557067871094	3	432.601727	1294.78335	-5.6621	-0.0024494	-2.841	-0.001229	-8.5031	-0.0036785	432.6004867745786	164.19	0.21371	162.55	162.38	162.6	-1.6405					7	4	2	0	0	0	0.025722	1	16219	16219		41.08	12.503	1	151210	+		34895	25432	28721	28748	38344	38344					0.14775236745367692
LRPNKLPKP	9	Unmodified	_LRPNKLPKP_					0	0	0			REV__nc|ENSG00000132016|Q0VDD7-2|BRME1	REV__nc|ENSG00000132016|Q0VDD7-2|BRME1	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.8101196289062	2	531.842751	1061.67095	0.31804	0.00016915	-0.19079	-0.00010147	0.12725	6.7677E-05	531.842431805456	71.912	0.53918	71.912	71.668	72.208	0					21	12	3	0	0	0	0.027392	1	6958	6958		73.975	0	1	361730	+		34896	19048	28722	28749	38345	38345					0.14258007739181267
LRPPAEPAF	9	Unmodified	_LRPPAEPAF_					0	0	0		ENST00000407558.8_1_16:3533585-3534923:+|nuORF;ENST00000576819.1_1_16:3534641-3534923:+|nuORF;nc|ENSG00000122390|Q9H7X0-5|NAA60	ENST00000407558.8_1_16:3533585-3534923:+|nuORF	ENST00000407558.8_1_16:3533585-3534923:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.8174133300781	2	499.276909	996.539266	2.5148	0.0012556	3.6266	0.0018107	6.1414	0.0030663	499.2785927073751	102.64	0.88344	102.64	102.38	103.26	0					44	20	3	0	0	0	0.027462	1	11468	11468		33.516	16.151	1	608480			34897	11498	28723	28750	38346	38346					0.04085777651414446
LRPPGTAR	8	Unmodified	_LRPPGTAR_					0	0	0		ENSG00000205502|ENST00000380392|C2CD4B	ENSG00000205502|ENST00000380392|C2CD4B	ENSG00000205502|ENST00000380392|C2CD4B	MULTI-SECPEP	OvCa99_classI_Rep5	1	435.2597351074219	2	434.261594	866.508634	0.1771	7.691E-05	4.2097	0.0018281	4.3868	0.001905	434.2619286010928	50.929	0.35075	50.929	50.685	51.036	0					12	7	2	0	0	0	0.028476	1	3870	3870		17.365	0.89182	1	178640			34898	9075	28724	28751	38347	38347					0.0700404405702102
LRPPLLQL	8	Unmodified	_LRPPLLQL_					0	0	0		ENSG00000104903|ENST00000264824|LYL1	ENSG00000104903|ENST00000264824|LYL1	ENSG00000104903|ENST00000264824|LYL1	MULTI-MSMS	OvCa9_classI_Rep2	2	475.3128356933594	2	475.313295	948.612037	0.3649	0.00017344	-0.66101	-0.00031419	-0.29611	-0.00014075	475.31289417376075	113.27	2.1231	113.15	112.82	114.94	-0.12174					75	42	4	0	0	0	0.47599	2	10768	10749;10768		79.939	8.5613	1	307110			34899	2406	28725	28752	38348;38349	38349					0.1356753144484628
LRPPLLQL	8	Unmodified	_LRPPLLQL_					0	0	0		ENSG00000104903|ENST00000264824|LYL1	ENSG00000104903|ENST00000264824|LYL1	ENSG00000104903|ENST00000264824|LYL1	MULTI-MSMS	OvCa9_classI_Rep3	3	475.312744140625	2	475.313295	948.612037	0.97281	0.00046239	-1.2874	-0.00061192	-0.31459	-0.00014953	475.3125683333553	114.33	2.0434	113.27	112.84	114.88	-1.055					93	40	4	0	0	0	0.39692	5	8447	8428;8434;8440;8447;8454		88.643	14.126	1	307310			34900	2406	28725	28752	38350;38351;38352;38353;38354	38353					0.1356753144484628
LRPPPAQL	8	Unmodified	_LRPPPAQL_					0	0	0			REV__AluSc8_dup19972|chr19:11449845-11450143:-|1.3090491097122556|0.184113349524997|2.83|429.0|20|3|anti-sense	REV__AluSc8_dup19972|chr19:11449845-11450143:-|1.3090491097122556|0.184113349524997|2.83|429.0|20|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	446.2756652832031	2	446.27417	890.533787	-0.97478	-0.00043502	0.85663	0.00038229	-0.11815	-5.2729E-05	446.2744414722382	72.963	1.6769	69.567	69.253	70.93	-3.3961					57	34	2	0	0	0	0.61758	1	5632	5632		60.294	5.5293	1	564710	+		34901	15603	28726	28753	38355	38355					0.08414098859600472
LRPPPAQL	8	Unmodified	_LRPPPAQL_					0	0	0			REV__AluSc8_dup19972|chr19:11449845-11450143:-|1.3090491097122556|0.184113349524997|2.83|429.0|20|3|anti-sense	REV__AluSc8_dup19972|chr19:11449845-11450143:-|1.3090491097122556|0.184113349524997|2.83|429.0|20|3|anti-sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	446.27417	890.533787	2.5314	0.0011297	-2.653	-0.0011839	-0.12155	-5.4243E-05	446.272918065476	71.84	1.6765	69.333	68.699	70.375	-2.5071	-0.117	-0.0011322	NaN	60.294	94	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169070	+		34902	15603	28726	28753							0.08414098859600472
LRPPYMEP	8	Unmodified	_LRPPYMEP_					0	0	0			REV__ENST00000409275.1_1_2:85645399-85645495:-|nuORF	REV__ENST00000409275.1_1_2:85645399-85645495:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.8252868652344	2	501.757495	1001.50044	0.38604	0.0001937	2.7855	0.0013976	3.1715	0.0015913	501.7587860711282	74.064	0.68584	74.064	73.755	74.441	0					34	17	3	0	0	0	0.028476	1	7303	7303		33.516	0	1	2880300	+		34903	25465	28727	28754	38356	38356					-0.0002527097459505967
LRPQLPPAHPL	11	Unmodified	_LRPQLPPAHPL_					0	0	0		ENST00000564629.1_1_16:31469306-31469441:-|nuORF	ENST00000564629.1_1_16:31469306-31469441:-|nuORF	ENST00000564629.1_1_16:31469306-31469441:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8683471679688	2	619.87204	1237.72953	-1.8762	-0.001163	-2.3116	-0.0014329	-4.1878	-0.0025959	619.8704234308321	147.79	3.8764	146.35	144.25	148.12	-1.4351					189	77	4	0	0	0	0.72493	1	14657	14657		16.473	2.336	1	269210			34904	13810	28728	28755	38357	38357					0.12017064313636183
LRPRGWQP	8	Unmodified	_LRPRGWQP_					0	0	0		nc|ENSG00000036530|Q9Y6A2-3|CYP46A1;nc|ENSG00000036530|Q9Y6A2-2|CYP46A1;ENSG00000036530|ENST00000261835|CYP46A1	nc|ENSG00000036530|Q9Y6A2-3|CYP46A1	nc|ENSG00000036530|Q9Y6A2-3|CYP46A1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.3250427246094	2	505.288143	1008.56173	-1.0579	-0.00053456	3.5392	0.0017883	2.4813	0.0012538	505.2900652897472	106.3	0.35157	104.28	104.21	104.56	-2.0161					11	6	3	0	0	0	0.028476	1	9693	9693		52.299	13.046	1	19534			34905	1088	28729	28756	38358	38358					0.05779421839702081
LRPSGRIGPAL	11	Unmodified	_LRPSGRIGPAL_					0	0	0			REV__ENSG00000133116|ENST00000380099|KL	REV__ENSG00000133116|ENST00000380099|KL	MULTI-MSMS	OvCa9_classI_Rep4_	4	568.845458984375	2	568.848564	1135.68258	0.54685	0.00031108	-4.2377	-0.0024106	-3.6909	-0.0020995	568.8459810585302	123.26	2.2433	121.89	120.96	123.2	-1.3666					118	44	3	0	0	0	0.52474	1	11635	11635		51.528	8.6635	1	383340	+		34906	19131	28730	28757	38359	38359					0.12016204762517191
LRPSNSTL	8	Unmodified	_LRPSNSTL_					0	0	0			REV__ENSG00000173801|ENST00000393931|JUP	REV__ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	OvCa9_classI_Rep2	2	444.2510681152344	2	444.250892	886.48723	1.3499	0.00059967	-1.3711	-0.00060911	-0.021233	-9.4329E-06	444.2501838124347	46.728	1.6349	44.018	43.696	45.331	-2.7097					87	32	4	0	0	0	0.36941	1	2812	2812		94.006	14.555	1	733010	+		34907	21800	28731	28758	38360	38360					0.03944614237661881
LRPYTTYLF	9	Unmodified	_LRPYTTYLF_					0	0	0		ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	MULTI-MSMS	OvCa9_classI_Rep2	2	587.3202514648438	2	587.318774	1172.623	0.74905	0.00043993	1.5759	0.00092554	2.3249	0.0013655	587.3195769600642	29.847	0.78018	27.137	26.975	27.755	-2.7097					33	15	3	0	0	0	0.64339	1	779	779		26.796	0.10319	1	104770			34908	4764	28732	28759	38361	38361					0.043588890284581794
LRQAPTRPE	9	Unmodified	_LRQAPTRPE_					0	0	0			REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.2800903320312	2	534.301447	1066.58834	-1.8277	-0.00097654	1.1758	0.00062822	-0.65191	-0.00034832	534.3018420121768	73.544	0.77276	70.148	69.785	70.557	-3.3961					25	15	2	0	0	0	0.027455	1	5741	5741		34.173	2.6427	1	118020	+		34909	17136	28733	28760	38362	38362					0.05771065940348308
LRQDVPWFTVL	11	Unmodified	_LRQDVPWFTVL_					0	0	0		ENST00000563394.1_1_17:42299529-42300072:+|nuORF	ENST00000563394.1_1_17:42299529-42300072:+|nuORF	ENST00000563394.1_1_17:42299529-42300072:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	458.58941650390625	3	458.590717	1372.75032	-0.52575	-0.0002411	-1.691	-0.00077549	-2.2168	-0.0010166	458.5898478189458	54.048	2.6368	51.234	50.578	53.215	-2.8139					132	52	4	0	0	0	0.68709	1	3672	3672		34.087	1.0471	1	257930			34910	13785	28734	28761	38363	38363					0.07885609902632496
LRQETLAE	8	Unmodified	_LRQETLAE_					0	0	0		ENST00000546575.1_1_12:54852895-54857111:-|nuORF;ENST00000552395.5_1_12:54852895-54867341:-|nuORF;ENSG00000170627|ENST00000305879|GTSF1	ENST00000546575.1_1_12:54852895-54857111:-|nuORF	ENST00000546575.1_1_12:54852895-54857111:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2796630859375	2	480.261456	958.50836	-0.70807	-0.00034006	0.61278	0.0002943	-0.095286	-4.5762E-05	480.2616845345002	42.046	0.68739	42.046	41.809	42.496	0					25	15	2	0	0	0	0.028476	1	2726	2726		99.375	28.079	1	947460			34911	7127	28735	28762	38364	38364					0.027445795465155243
LRQFITIQ	8	Unmodified	_LRQFITIQ_					0	0	0			REV__ENST00000463231.5_1_2:73957847-73959324:-|nuORF	REV__ENST00000463231.5_1_2:73957847-73959324:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	509.8037414550781	2	509.805834	1017.59712	-1.3099	-0.00066782	-2.9211	-0.0014892	-4.231	-0.002157	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.73938	1	11048	11048		31.955	5.1588	1	99460	+		34912	26126	28736	28763	38365	38365					0.08902039576844345
LRQHLQLV	8	Unmodified	_LRQHLQLV_					0	0	0		ENSG00000214338|ENST00000525778|SOGA3	ENSG00000214338|ENST00000525778|SOGA3	ENSG00000214338|ENST00000525778|SOGA3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.80035400390625	2	503.811451	1005.60835	0.46897	0.00023627	-1.7109	-0.00086196	-1.2419	-0.00062569	503.8104367246723	97.426	0.91753	95.047	94.758	95.675	-2.3786					22	12	3	0	0	0	0.028476	1	8628	8628		47.916	5.0513	1	66557			34913	9171	28737	28764	38366	38366					0.10576861670983817
LRQHLQLV	8	Unmodified	_LRQHLQLV_					0	0	0		ENSG00000214338|ENST00000525778|SOGA3	ENSG00000214338|ENST00000525778|SOGA3	ENSG00000214338|ENST00000525778|SOGA3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	503.811451	1005.60835	-0.4597	-0.0002316	-0.53933	-0.00027172	-0.99903	-0.00050332	503.81099037450883	95.866	0.8461	94.838	94.615	95.461	-1.0281	-0.12024	0.00021393	NaN	47.916	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48220			34914	9171	28737	28764							0.10576861670983817
LRQHLQLV	8	Unmodified	_LRQHLQLV_					0	0	0		ENSG00000214338|ENST00000525778|SOGA3	ENSG00000214338|ENST00000525778|SOGA3	ENSG00000214338|ENST00000525778|SOGA3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	503.811451	1005.60835	-1.1783	-0.00059364	0.22068	0.00011118	-0.95762	-0.00048246	503.81135357673276	96.819	0.87695	94.991	94.775	95.652	-1.8286	0.031867	0.00097973	NaN	47.916	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54730			34915	9171	28737	28764							0.10576861670983817
LRQIKTPV	8	Unmodified	_LRQIKTPV_					0	0	0		ENST00000504432.5_2_4:99830936-99831074:-|nuORF	ENST00000504432.5_2_4:99830936-99831074:-|nuORF	ENST00000504432.5_2_4:99830936-99831074:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	477.8093566894531	2	477.808377	953.6022	0.21496	0.00010271	-0.17413	-8.3201E-05	0.040835	1.9511E-05	477.80816889216754	64.744	0.97179	64.744	64.375	65.347	0					53	23	3	0	0	0	0.36941	1	5892	5892		94.006	5.3636	1	2392700			34916	12875	28738	28765	38367	38367					0.12354343439460536
LRQINELLL	9	Unmodified	_LRQINELLL_					0	0	0			REV__ENSG00000147251|ENST00000276202|DOCK11	REV__ENSG00000147251|ENST00000276202|DOCK11	MULTI-MSMS	OvCa99_classI_Rep5	1	556.3460083007812	2	556.345323	1110.67609	2.0784	0.0011563	0.20449	0.00011377	2.2829	0.0012701	556.3453193355933	122.49	0.68617	122.49	122.27	122.95	0					36	14	4	0	0	0	0.21231	1	14120	14120		74.255	4.6274	1	742400	+		34917	20056	28739	28766	38368	38368					0.12518266811139256
LRQKAYMFIL	10	Unmodified	_LRQKAYMFIL_					0	0	0		ENSG00000161594|ENST00000293303|KLHL10;KLHL10|p.H373Tfs*9|1|0.07|ENSG00000161594|chr17:41845558-41845558|C/-|frameshift_variant	ENSG00000161594|ENST00000293303|KLHL10	ENSG00000161594|ENST00000293303|KLHL10	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8646850585938	2	641.870651	1281.72675	-6.6297	-0.0042554	-0.035102	-2.2531E-05	-6.6648	-0.0042779	641.8705166480966	158.45	0.58508	157.18	156.97	157.56	-1.267					21	13	2	0	0	0	0.81289	1	13683	13683		17.365	2.5001	1	17877			34918	6132	28740	28767	38369	38369					0.09715472864490948
LRQKGDRQD	9	Unmodified	_LRQKGDRQD_					0	0	0			REV__ENST00000561241.1_1_15:63340374-63341172:-|nuORF	REV__ENST00000561241.1_1_15:63340374-63341172:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	557.330322265625	2	558.299436	1114.58432	-0.51066	-0.0002851	2.8496	0.0015909	2.339	0.0013058	558.3008402934779	109.05	0.84032	107.85	107.61	108.45	-1.1978					33	15	3	0	0	0	0.027462	1	7832	7832		45.952	13.201	1	66247	+		34919	27632	28741	28768	38370	38370					0.03160976446656605
LRQKYLERI	9	Unmodified	_LRQKYLERI_					0	0	0			REV__nc|ENSG00000008226|Q9Y238-2|DLEC1	REV__nc|ENSG00000008226|Q9Y238-2|DLEC1	MULTI-MSMS	OvCa99_classI_Rep5	1	609.8707885742188	2	609.869497	1217.72444	-0.54847	-0.00033449	0.12141	7.4044E-05	-0.42706	-0.00026045	609.8694581099357	59.475	1.0494	59.475	59.265	60.314	0					67	26	4	0	0	0	0.17606	1	5122	5122		74.255	24.719	1	5878700	+		34920	16447	28742	28769	38371	38371					0.1242876045103003
LRQLAQRLH	9	Unmodified	_LRQLAQRLH_					0	0	0			REV__nc|ENSG00000149782|Q01970-2|PLCB3	REV__nc|ENSG00000149782|Q01970-2|PLCB3	MULTI-MSMS	OvCa99_classI_Rep5	1	567.8457641601562	2	567.846356	1133.67816	-0.65117	-0.00036976	0.37472	0.00021278	-0.27645	-0.00015698	567.8463950431177	28.368	0.54795	28.368	28.14	28.688	0					26	10	4	0	0	0	0.55588	1	920	920		37.159	1.5408	1	156840	+		34921	20177	28743	28770	38372	38372					0.11666740339592252
LRQLAQRLH	9	Unmodified	_LRQLAQRLH_					0	0	0			REV__nc|ENSG00000149782|Q01970-2|PLCB3	REV__nc|ENSG00000149782|Q01970-2|PLCB3	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	567.846356	1133.67816	-0.65117	-0.00036976	0.37472	0.00021278	-0.27645	-0.00015698	567.8463950431177	28.368	0.54795	28.368	28.14	28.688	0	0	0	NaN	37.159	26	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156840	+		34922	20177	28743	28770							0.11666740339592252
LRQLGKLLI	9	Unmodified	_LRQLGKLLI_					0	0	0			REV__nc|ENSG00000132153|Q7L2E3-3|DHX30	REV__nc|ENSG00000132153|Q7L2E3-3|DHX30	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2913818359375	2	527.360776	1052.707	2.5134	0.0013254	-0.16596	-8.7522E-05	2.3474	0.0012379	527.3604458727827	96.181	0.42158	96.181	95.956	96.378	0					14	9	2	0	0	0	0.027462	1	10526	10526		31.955	0	1	99982	+		34923	19055	28744	28771	38373	38373					0.18275464916041528
LRQLILPP	8	Unmodified	_LRQLILPP_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.3126525878906	2	475.313295	948.612037	1.0224	0.00048597	-1.4538	-0.00069099	-0.43134	-0.00020502	475.3124814237158	114.68	1.7771	113.28	112.89	114.66	-1.3977					72	34	4	0	0	0	0.44269	1	10652	10652		83.287	0	1	373550	+		34924	17152	28745	28772	38374	38374					0.1356753144484628
LRQLLDDL	8	Unmodified	_LRQLLDDL_					0	0	0			REV__CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	REV__CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.32513427734375	2	493.287474	984.560395	-0.51718	-0.00025512	0.49658	0.00024496	-0.020592	-1.0158E-05	493.2872072193794	80.449	0.78311	77.739	77.367	78.15	-2.7106					27	15	2	0	0	0	0.028476	1	6553	6553		53.351	0	1	74200	+		34925	15732	28746	28773	38375	38375					0.06749742960278127
LRQLMVNL	8	Unmodified	_LRQLMVNL_					0	0	0		ENSG00000273611|ENST00000617429|ZNHIT3	ENSG00000273611|ENST00000617429|ZNHIT3	ENSG00000273611|ENST00000617429|ZNHIT3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.3243713378906	2	493.794412	985.574271	-0.29128	-0.00014383	-4.1772	-0.0020627	-4.4685	-0.0022065	493.7929288236312	79.772	0.14397	77.021	76.938	77.082	-2.7514					4	2	2	0	0	0	0.028476	1	6493	6493		38.806	20.482	1	10151			34926	9558	28747	28774	38376	38376					0.08090697187708429
LRQLNGHL	8	Unmodified	_LRQLNGHL_					0	0	0			REV__tr|A0A7D6VQW0|A0A7D6VQW0_9CLOTGlutamyl-tRNAreductaseOS=ClostridiumintestinaleOX=36845GN=hemAPE=3SV=1	REV__tr|A0A7D6VQW0|A0A7D6VQW0_9CLOTGlutamyl-tRNAreductaseOS=ClostridiumintestinaleOX=36845GN=hemAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	476.22186279296875	2	475.780151	949.545748	0.49795	0.00023691	1.7817	0.00084771	2.2797	0.0010846	475.78074643050263	115.38	2.2718	114.34	113.86	116.13	-1.0414					103	45	4	0	0	0	0.028476	1	8756	8756		71.378	8.3995	1	275890	+		34927	31362	28748	28775	38377	38377					0.06895715602797736
LRQPLELA	8	Unmodified	_LRQPLELA_					0	0	0			REV__nc|ENSG00000020219|A6NM43|CCT8L1P	REV__nc|ENSG00000020219|A6NM43|CCT8L1P	MULTI-MSMS	OvCa99_classI_Rep5	1	470.28607177734375	2	470.284734	938.554916	3.1575	0.0014849	-0.77532	-0.00036462	2.3822	0.0011203	470.2842487267044	102.45	0.85205	102.45	102.12	102.98	0					47	19	3	0	0	0	0.35821	1	11443	11443		96.19	2.995	1	1462200	+		34928	23019	28749	28776	38378	38378					0.0831806416845211
LRQPLELA	8	Unmodified	_LRQPLELA_					0	0	0			REV__nc|ENSG00000020219|A6NM43|CCT8L1P	REV__nc|ENSG00000020219|A6NM43|CCT8L1P	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	470.284734	938.554916	3.1575	0.0014849	-0.77532	-0.00036462	2.3822	0.0011203	470.2842487267044	102.45	0.85205	102.45	102.12	102.98	0	0	0	NaN	96.19	47	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1462200	+		34929	23019	28749	28776							0.0831806416845211
LRQPPLSL	8	Unmodified	_LRQPPLSL_					0	0	0			REV__ENST00000372954.5_1_9:130948054-130953733:-|nuORF	REV__ENST00000372954.5_1_9:130948054-130953733:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.2882995605469	2	462.287277	922.560001	-0.84311	-0.00038976	0.56502	0.0002612	-0.27809	-0.00012856	462.28743237203275	98.935	1.4389	96.61	96.228	97.667	-2.3253					81	27	4	0	0	0	0.45246	1	8798	8798		82.305	8.05	1	777210	+		34930	24473	28750	28777	38379	38379					0.09562368031083679
LRQQELLL	8	Unmodified	_LRQQELLL_					0	0	0			REV__ENSG00000129250|ENST00000320785|KIF1C	REV__ENSG00000129250|ENST00000320785|KIF1C	MULTI-MSMS	OvCa99_classI_Rep5	1	506.8124084472656	2	506.811116	1011.60768	-1.429	-0.00072423	-0.67013	-0.00033963	-2.0991	-0.0010639	506.8105511307101	103.7	1.3564	103.7	103.18	104.54	0					64	31	4	0	0	0	0.45246	1	11592	11592		82.305	0	1	3048300	+		34931	18891	28751	28778	38380	38380					0.10234022231293238
LRQREPLKT	9	Unmodified	_LRQREPLKT_					0	0	0			REV__ENST00000469070.1_1_3:119814200-119814557:+|nuORF	REV__ENST00000469070.1_1_3:119814200-119814557:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.8368530273438	2	570.846022	1139.67749	-0.58562	-0.0003343	-0.23177	-0.00013231	-0.8174	-0.00046661	570.8459246616429	67.929	0.70468	67.929	67.528	68.233	0					38	17	3	0	0	0	0.027462	1	6367	6367		37.812	6.2817	1	2184700	+		34932	26237	28752	28779	38381	38381					0.11323900899856199
LRQRKTTK	8	Unmodified	_LRQRKTTK_					0	0	0		ENSG00000113734|ENST00000351486|BNIP1;nc|ENSG00000113734|Q12981-1|BNIP1	ENSG00000113734|ENST00000351486|BNIP1	ENSG00000113734|ENST00000351486|BNIP1	MULTI-MSMS	OvCa9_classI_Rep2	2	515.8291015625	2	515.827632	1029.64071	0.48529	0.00025033	1.6371	0.00084445	2.1224	0.0010948	515.8284227600024	132.78	1.9202	132.55	132.23	134.15	-0.22696					116	38	5	0	0	0	0.72896	1	13237	13237		37.159	2.0071	1	1299600			34933	2991	28753	28780	38382	38382					0.1270764907396824
LRQSRPRRRRR	11	Unmodified	_LRQSRPRRRRR_					0	0	0			REV__ENST00000457380.5_1_X:46937884-46939716:+|nuORF	REV__ENST00000457380.5_1_X:46937884-46939716:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	513.3193359375	3	512.989202	1535.94578	-4.9038	-0.0025156	-2.494	-0.0012794	-7.3978	-0.003795	512.9879880478285	162.73	1.8375	162.51	160.84	162.68	-0.22697					96	36	4	0	0	0	0.72582	1	16541	16541		3.6191	0.21035	1	139950	+		34934	26045	28754	28781	38383	38383					0.19924057990692745
LRQSRPRRRRR	11	Unmodified	_LRQSRPRRRRR_					0	0	0			REV__ENST00000457380.5_1_X:46937884-46939716:+|nuORF	REV__ENST00000457380.5_1_X:46937884-46939716:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.98583984375	3	512.989202	1535.94578	-6.5915	-0.0033814	-1.0114	-0.00051886	-7.6029	-0.0039002	512.9885265039754	160.8	2.6264	159.19	157.99	160.62	-1.6101					147	60	4	0	0	0	0.72555	1	15878	15878		8.4073	2.4062	1	58638	+		34935	26045	28754	28781	38384	38384					0.19924057990692745
LRRADIYSL	9	Unmodified	_LRRADIYSL_					0	0	0		ENST00000552233.5_1_12:53823563-53823812:+|nuORF;nc|ENSG00000135409|Q16671-2|AMHR2;ENSG00000135409|ENST00000257863|AMHR2	ENST00000552233.5_1_12:53823563-53823812:+|nuORF	ENST00000552233.5_1_12:53823563-53823812:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.8023071289062	2	553.819473	1105.62439	0.49417	0.00027368	3.9948	0.0022124	4.489	0.0024861	553.8215790860334	60.253	0.29692	56.823	56.65	56.947	-3.43					8	5	2	0	0	0	0.027462	1	4081	4081		53.351	2.016	1	30775			34936	4374	28755	28782	38385	38385					0.07580523117212579
LRRDLPVT	8	Unmodified	_LRRDLPVT_					0	0	0		ENSG00000177938|ENST00000317658|CAPZA3	ENSG00000177938|ENST00000317658|CAPZA3	ENSG00000177938|ENST00000317658|CAPZA3	MULTI-MSMS	OvCa99_classI_Rep5	1	485.2840576171875	2	485.295633	968.576714	-0.75569	-0.00036673	0.56768	0.00027549	-0.18801	-9.1243E-05	485.2957256616435	43.457	0.63909	43.457	43.27	43.909	0					30	14	3	0	0	0	0.62934	1	2868	2868		57.811	4.4598	1	1111500			34937	7720	28756	28783	38386	38386					0.09116868917044485
LRREKSITKWD	11	Unmodified	_LRREKSITKWD_					0	0	0			REV__ENSG00000148341|ENST00000372564|SH3GLB2	REV__ENSG00000148341|ENST00000372564|SH3GLB2	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.9403991699219	3	477.940409	1430.7994	-0.42016	-0.00020081	-0.19411	-9.2774E-05	-0.61427	-0.00029358	477.94032469001024	46.187	1.1896	43.115	42.876	44.065	-3.0724					62	22	4	0	0	0	0.69589	1	2417	2417		31.068	2.4914	1	281230	+		34938	20103	28757	28784	38387	38387					0.10122898191593777
LRRFLDPP	8	Unmodified	_LRRFLDPP_					0	0	0			REV__ENSG00000112276|ENST00000314641|BVES	REV__ENSG00000112276|ENST00000314641|BVES	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.3187561035156	2	507.298176	1012.5818	-0.78342	-0.00039743	3.3086	0.0016785	2.5252	0.001281	507.29984232420236	59.679	1.6744	56.898	56.452	58.126	-2.7801					56	31	2	0	0	0	0.028476	1	4321	4321		20.482	0	1	132910	+		34939	18090	28758	28785	38388	38388					0.07601172779641274
LRRGERGPLP	10	Unmodified	_LRRGERGPLP_					0	0	0			REV__ENST00000432825.6_1_9:37537116-37537239:-|nuORF	REV__ENST00000432825.6_1_9:37537116-37537239:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.845703125	2	575.843813	1149.67307	-2.837	-0.0016336	2.0201	0.0011633	-0.81683	-0.00047036	575.8447938780345	149.53	0.7543	148.1	147.57	148.32	-1.4344					29	15	2	0	0	0	0.74374	1	14764	14764		25.574	1.0549	1	24094	+		34940	25737	28759	28786	38389	38389					0.10422436476983421
LRRGGAESRM	10	Unmodified	_LRRGGAESRM_					0	0	0			REV__ENST00000409789.5_1_2:220041540-220042438:-|nuORF	REV__ENST00000409789.5_1_2:220041540-220042438:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.8079223632812	2	566.803831	1131.59311	2.3636	0.0013397	-4.0403	-0.00229	-1.6766	-0.00095032	566.8006178910607	76.998	0.66498	76.998	76.757	77.422	0					23	15	2	0	0	0	0.026803	1	7757	7757		40.058	8.5284	1	239760	+		34941	25480	28760	28787	38390	38390					0.03257626811478076
LRRGPSRTV	9	Unmodified	_LRRGPSRTV_					0	0	0			REV__ENST00000586689.5_2_17:74733959-74734425:+|nuORF	REV__ENST00000586689.5_2_17:74733959-74734425:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.7681274414062	2	521.317432	1040.62031	-0.77608	-0.00040458	3.0215	0.0015752	2.2454	0.0011706	521.3190209704444	76.902	0.57983	73.963	73.738	74.317	-2.9389					24	11	3	0	0	0	0.027462	1	6154	6154		42.396	1.618	1	55949	+		34942	27868	28761	28788	38391	38391					0.10162478414167708
LRRGPSRTV	9	Unmodified	_LRRGPSRTV_					0	0	0			REV__ENST00000586689.5_2_17:74733959-74734425:+|nuORF	REV__ENST00000586689.5_2_17:74733959-74734425:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.317432	1040.62031	-0.28522	-0.00014869	2.2426	0.0011691	1.9574	0.0010204	521.3186110455665	75.864	0.62222	74.01	73.739	74.361	-1.854	0.023646	-0.00057336	NaN	42.396	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44185	+		34943	27868	28761	28788							0.10162478414167708
LRRGVLVTL	9	Unmodified	_LRRGVLVTL_					0	0	0		ENSG00000157911|ENST00000447513|PEX10;nc|ENSG00000157911|O60683-2|PEX10	ENSG00000157911|ENST00000447513|PEX10	ENSG00000157911|ENST00000447513|PEX10	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.8240966796875	2	513.842751	1025.67095	1.2215	0.00062766	2.3681	0.0012168	3.5896	0.0018445	513.8439010052645	67.367	0.19843	64.48	64.391	64.59	-2.8873					5	3	2	0	0	0	0.027462	1	2843	2843		32.812	0	1	10431			34944	5918	28762	28789	38392	38392					0.15914007739161207
LRRIRAES	8	Unmodified	_LRRIRAES_					0	0	0		ENSG00000013306|ENST00000377095|SLC25A39;nc|ENSG00000013306|Q9BZJ4-2|SLC25A39;ENST00000591006.5_1_17:42397371-42398600:-|nuORF	ENSG00000013306|ENST00000377095|SLC25A39	ENSG00000013306|ENST00000377095|SLC25A39	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.7866516113281	2	500.804157	999.593761	-1.1023	-0.00055203	3.7321	0.0018691	2.6299	0.001317	500.8058536514794	99.459	1.3842	97.134	96.847	98.231	-2.3253					51	26	3	0	0	0	0.028476	1	8934	8934		37.159	0	1	249050			34945	983	28763	28790	38393	38393					0.09394789522843894
LRRIRAES	8	Unmodified	_LRRIRAES_					0	0	0		ENSG00000013306|ENST00000377095|SLC25A39;nc|ENSG00000013306|Q9BZJ4-2|SLC25A39;ENST00000591006.5_1_17:42397371-42398600:-|nuORF	ENSG00000013306|ENST00000377095|SLC25A39	ENSG00000013306|ENST00000377095|SLC25A39	MULTI-MATCH	OvCa9_classI_Rep2	2		2	500.804157	999.593761	-0.66891	-0.00033499	2.8343	0.0014194	2.1654	0.0010844	500.80548980423725	97.988	1.2305	97.095	96.776	98.007	-0.89305	-0.050971	-0.00036114	NaN	15.642	41	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202630			34946	983	28763	28790							0.09394789522843894
LRRIRAES	8	Unmodified	_LRRIRAES_					0	0	0		ENSG00000013306|ENST00000377095|SLC25A39;nc|ENSG00000013306|Q9BZJ4-2|SLC25A39;ENST00000591006.5_1_17:42397371-42398600:-|nuORF	ENSG00000013306|ENST00000377095|SLC25A39	ENSG00000013306|ENST00000377095|SLC25A39	MULTI-MATCH	OvCa9_classI_Rep3	3		2	500.804157	999.593761	-0.49127	-0.00024603	3.0657	0.0015353	2.5744	0.0012893	500.80557189203864	98.895	1.0805	97.21	96.904	97.985	-1.685	0.063643	-0.00012941	NaN	15.642	42	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250850			34947	983	28763	28790							0.09394789522843894
LRRKGLFT	8	Unmodified	_LRRKGLFT_					0	0	0		ENST00000607001.1_1_5:72793784-72793994:-|nuORF	ENST00000607001.1_1_5:72793784-72793994:-|nuORF	ENST00000607001.1_1_5:72793784-72793994:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.2767333984375	2	495.813993	989.613434	0.088709	4.3983E-05	-4.2039	-0.0020844	-4.1152	-0.0020404	495.8118137661869	58.091	0.50415	58.091	57.859	58.363	0					20	11	2	0	0	0	0.028476	1	4937	4937		19.36	9.8894	1	414990			34948	14280	28764	28791	38394	38394					0.11821165533615385
LRRKPDGEVLV	11	Unmodified	_LRRKPDGEVLV_					0	0	0		ENSG00000198331|ENST00000425380|HYLS1	ENSG00000198331|ENST00000425380|HYLS1	ENSG00000198331|ENST00000425380|HYLS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	641.867431640625	2	641.385511	1280.75647	0.63471	0.00040709	-1.633	-0.0010474	-0.99826	-0.00064027	641.3842919429853	162.55	0.62819	162.55	162.02	162.65	0					23	14	2	0	0	0	0.025701	1	19050	19050		29.17	7.4843	1	395370			34949	8807	28765	28792	38395	38395					0.12732128134166487
LRRLHLVMSR	10	Unmodified	_LRRLHLVMSR_					0	0	0			REV__ENSG00000015133|ENST00000389857|CCDC88C	REV__ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MSMS	OvCa9_classI_Rep3	3	640.8908081054688	2	640.890241	1279.76593	-0.17161	-0.00010998	-0.26237	-0.00016815	-0.43398	-0.00027813	640.8899625944715	132.12	1.093	131	130.64	131.73	-1.1249					68	21	4	0	0	0	0.74374	1	10528	10528		25.574	1.3713	1	271940	+		34950	16514	28766	28793	38396	38396					0.13723617938717325
LRRLLLLL	8	Unmodified	_LRRLLLLL_					0	0	0		ENST00000525370.5_1_19:50310410-50314932:-|nuORF;nc|ENSG00000010361|Q9BT04-3|FUZ;ENSG00000010361|ENST00000313777|FUZ;DPEP3|p.L408Nfs*3|1|0.04|ENSG00000141096|chr16:67976176-67976177|-/TT|frameshift_variant;ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000188803|Q6ZSJ9|SHISA6;ENSG00000188803|ENST00000441885|SHISA6;nc|ENSG00000188803|Q6ZSJ9-2|SHISA6	ENST00000525370.5_1_19:50310410-50314932:-|nuORF;nc|ENSG00000188803|Q6ZSJ9-2|SHISA6;REV__ENST00000379162.8_1_X:24483408-24483594:+|nuORF	nc|ENSG00000188803|Q6ZSJ9-2|SHISA6	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.3248596191406	2	505.365862	1008.71717	-0.070742	-3.5751E-05	1.6386	0.00082807	1.5678	0.00079232	505.3667793154113	105.67	0.2586	104.33	104.2	104.46	-1.3482					6	4	2	0	0	0	0.028476	1	7408	7408		44.531	0	1	17460			34951	946;15232;25153	28767	28794	38397	38397					0.2131607264128661
LRRLLLLL	8	Unmodified	_LRRLLLLL_					0	0	0		ENST00000525370.5_1_19:50310410-50314932:-|nuORF;nc|ENSG00000010361|Q9BT04-3|FUZ;ENSG00000010361|ENST00000313777|FUZ;DPEP3|p.L408Nfs*3|1|0.04|ENSG00000141096|chr16:67976176-67976177|-/TT|frameshift_variant;ENSG00000141096|ENST00000268793|DPEP3;nc|ENSG00000188803|Q6ZSJ9|SHISA6;ENSG00000188803|ENST00000441885|SHISA6;nc|ENSG00000188803|Q6ZSJ9-2|SHISA6	ENST00000525370.5_1_19:50310410-50314932:-|nuORF;nc|ENSG00000188803|Q6ZSJ9-2|SHISA6;REV__ENST00000379162.8_1_X:24483408-24483594:+|nuORF	nc|ENSG00000188803|Q6ZSJ9-2|SHISA6	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	505.365862	1008.71717	-1.074	-0.00054278	5.8027	0.0029325	4.7286	0.0023897	505.36901806493375	106.35	0.50727	104.33	104.1	104.61	-2.0161	0.0029983	0.0023863	NaN	62.978	13	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19304			34952	946;15232;25153	28767	28794							0.2131607264128661
LRRLLQSYL	9	Unmodified	_LRRLLQSYL_					0	0	0			REV__AluSx_dup33404|chr5:139536367-139536654:-|1.06276840916308|0.022330481167481|5.57|412.0|5|2|sense	REV__AluSx_dup33404|chr5:139536367-139536654:-|1.06276840916308|0.022330481167481|5.57|412.0|5|2|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	581.3643188476562	2	581.358765	1160.70298	-0.48293	-0.00028075	0.22842	0.00013279	-0.25451	-0.00014796	581.3587833995371	56.612	0.66429	56.612	56.34	57.004	0					42	15	4	0	0	0	0.61208	1	4711	4711		30.504	0	1	1453200	+		34953	15608	28768	28795	38398	38398					0.12905375422337784
LRRLPLPK	8	Unmodified	_LRRLPLPK_					0	0	0			REV__ENST00000266643.5_1_12:58149646-58150809:+|nuORF	REV__ENST00000266643.5_1_12:58149646-58150809:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.27081298828125	2	496.840011	991.665469	2.3276	0.0011564	-0.46886	-0.00023295	1.8587	0.00092349	496.8397244462161	76.005	0.32137	76.005	75.837	76.158	0					11	7	2	0	0	0	0.028476	1	7615	7615		26.796	6.3143	1	150330	+		34954	24043	28769	28796	38399	38399					0.16930328947364615
LRRLSEDL	8	Unmodified	_LRRLSEDL_					0	0	0		ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	ENSG00000253710|ENST00000521508|ALG11	MULTI-MSMS	OvCa9_classI_Rep2	2	501.2899169921875	2	501.290548	1000.56654	-0.80197	-0.00040202	0.50048	0.00025089	-0.30149	-0.00015113	501.2906816095173	135.63	4.8104	135.4	133.71	138.52	-0.22697					221	98	3	0	0	0	0.74229	1	13495	13495		30.504	0	1	70595			34955	9436	28770	28797	38400	38400					0.06628261191792717
LRRNTKSEF	9	Unmodified	_LRRNTKSEF_					0	0	0			REV__tr|A0A7D6W261|A0A7D6W261_9CLOTGlycosidehydrolasefamily25proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05105PE=3SV=1	REV__tr|A0A7D6W261|A0A7D6W261_9CLOTGlycosidehydrolasefamily25proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05105PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.3382568359375	2	575.820004	1149.62546	2.5765	0.0014836	1.4766	0.00085026	4.0531	0.0023339	576.3215864140582	100.91	0.37193	100.91	100.61	100.98	0					10	8	2	0	0	0	0.027462	1	11167	11167		35.618	16.515	1	182080	+		34956	31895	28771	28798	38401	38401					0.05662737486136393
LRRPALTQT	9	Unmodified	_LRRPALTQT_					0	0	0			REV__ENSG00000153902|ENST00000310123|LGI4	REV__ENSG00000153902|ENST00000310123|LGI4	MULTI-MSMS	OvCa9_classI_Rep2	2	528.319091796875	2	528.31964	1054.62473	-1.2877	-0.00068031	1.0635	0.00056189	-0.22415	-0.00011842	528.3201028484496	56.253	2.2315	53.449	52.879	55.11	-2.804					126	44	4	0	0	0	0.62352	1	3958	3958		29.15	1.2673	1	541320	+		34957	20352	28772	28799	38402	38402					0.09959942837053859
LRRPDEEHRRK	11	Unmodified	_LRRPDEEHRRK_					0	0	0			REV__ENSG00000120709|ENST00000239906|FAM53C	REV__ENSG00000120709|ENST00000239906|FAM53C	MULTI-MSMS	OvCa99_classI_Rep5	1	497.9505920410156	3	497.946557	1490.81784	2.2999	0.0011452	4.1047	0.0020439	6.4046	0.0031891	497.9485715688249	88.905	1.7869	88.905	88.595	90.382	0					133	43	4	0	0	0	0.70315	1	9461	9461		28.577	6.7963	1	16759000	+		34958	18514	28773	28800	38403	38403					0.09206452886132865
LRRPLSSSAP	10	Unmodified	_LRRPLSSSAP_					0	0	0		nc|ENSG00000241370|Q9H633-4|RPP21	nc|ENSG00000241370|Q9H633-4|RPP21	nc|ENSG00000241370|Q9H633-4|RPP21	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.7998657226562	2	542.317097	1082.61964	-0.14281	-7.7447E-05	0.30409	0.00016491	0.16128	8.7465E-05	542.3170326260249	51.183	0.72192	51.183	50.863	51.585	0					31	16	3	0	0	0	0.026956	1	3935	3935		42.396	8.2236	1	240280			34959	15338	28774	28801	38404	38404					0.08163638974474452
LRRPRWGGT	9	Unmodified	_LRRPRWGGT_					0	0	0			REV__ENST00000456633.1_1_1:155532947-155533019:+|nuORF	REV__ENST00000456633.1_1_1:155532947-155533019:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.2920532226562	2	549.817599	1097.62064	0.21156	0.00011632	-0.806	-0.00044315	-0.59443	-0.00032683	549.8171209353493	73.945	0.34313	73.945	73.792	74.135	0					13	8	2	0	0	0	0.027462	1	7270	7270		35.618	14.671	1	596810	+		34960	26031	28775	28802	38405	38405					0.0757389813404643
LRRPRWGGT	9	Unmodified	_LRRPRWGGT_					0	0	0			REV__ENST00000456633.1_1_1:155532947-155533019:+|nuORF	REV__ENST00000456633.1_1_1:155532947-155533019:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	549.817599	1097.62064	-1.1861	-0.00065214	-1.8483	-0.0010162	-3.0344	-0.0016684	549.8175209042682	76.161	0.72513	73.79	73.57	74.295	-2.3715	-0.077549	-0.00071111	NaN	34.173	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48598	+		34961	26031	28775	28802							0.0757389813404643
LRRPSLLLL	9	Unmodified	_LRRPSLLLL_					0	0	0		nc|ENSG00000169446|Q8N4V1-2|MMGT1	nc|ENSG00000169446|Q8N4V1-2|MMGT1	nc|ENSG00000169446|Q8N4V1-2|MMGT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.3070678710938	2	540.866226	1079.7179	1.449	0.00078369	-0.34163	-0.00018478	1.1073	0.00059891	540.8658928766845	111.27	0.62453	111.27	110.94	111.56	0					21	13	2	0	0	0	0.027462	1	12659	12659		27.882	0	1	148350			34962	15173	28776	28803	38406	38406					0.18122867290321665
LRRPVPPPM	9	Unmodified	_LRRPVPPPM_					0	0	0		ENST00000465695.1_1_10:75532322-75533104:+|nuORF;FUT11|p.L299Pfs*9|1|0.92|ENSG00000196968|chr10:73773375-73773387|CCTGGGCGCTGTG/-|frameshift_variant;nc|ENSG00000196968|Q495W5-2|FUT11;ENSG00000196968|ENST00000372841|FUT11	ENST00000465695.1_1_10:75532322-75533104:+|nuORF	ENST00000465695.1_1_10:75532322-75533104:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8175048828125	2	531.815679	1061.6168	0.089048	4.7357E-05	2.392	0.0012721	2.481	0.0013194	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.65476	1	13903	13903		25.45	0.93098	1	263230			34963	8666	28777	28804	38407	38407					0.08846092315957321
LRRQKRFKLEE	11	Unmodified	_LRRQKRFKLEE_					0	0	0		ENSG00000170608|ENST00000302177|FOXA3	ENSG00000170608|ENST00000302177|FOXA3	ENSG00000170608|ENST00000302177|FOXA3	MULTI-MSMS	OvCa9_classI_Rep2	2	501.6327209472656	3	501.63532	1501.88413	-5.5214	-0.0027697	2.3398	0.0011737	-3.1816	-0.001596	501.63683746014317	159.89	2.7041	159.67	158.29	160.99	-0.22697					138	54	3	0	0	0	0.7257	1	16280	16280		6.3209	0.31984	1	33161			34964	7123	28778	28805	38408	38408					0.1532626872824494
LRRQLWIWKFR	11	Unmodified	_LRRQLWIWKFR_					0	0	0		ENST00000464415.1_1_2:33817123-33824435:-|nuORF	ENST00000464415.1_1_2:33817123-33824435:-|nuORF	ENST00000464415.1_1_2:33817123-33824435:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.7749633789062	3	534.656166	1600.94667	-0.88099	-0.00047102	-4.0797	-0.0021812	-4.9607	-0.0026523	534.988386737158	27.011	0.25095	27.011	26.841	27.092	0					9	4	3	0	0	0	0.026554	1	762	762		1.2319	0	1	7988.5			34965	12251	28779	28806	38409	38409					0.17023459587039724
LRRQSNELE	9	Unmodified	_LRRQSNELE_					0	0	0			REV__KIF21B|p.H1503Afs*22|1|0.21|ENSG00000116852|chr1:200975607-200975608|-/G|frameshift_variant	REV__KIF21B|p.H1503Afs*22|1|0.21|ENSG00000116852|chr1:200975607-200975608|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	572.3160400390625	2	572.807094	1143.59963	-0.57153	-0.00032738	-3.5286	-0.0020212	-4.1002	-0.0023486	572.8049934425114	80.189	1.4519	78.494	77.767	79.218	-1.6951					54	28	2	0	0	0	0.027462	1	6840	6840		47.657	0	1	228410	+		34966	18323	28780	28807	38410	38410					0.0335784324386168
LRRQVRELQMR	11	Unmodified	_LRRQVRELQMR_					0	0	0		nc|ENSG00000108389|Q9NYA4|MTMR4;ENSG00000108389|ENST00000682306|MTMR4	nc|ENSG00000108389|Q9NYA4|MTMR4	nc|ENSG00000108389|Q9NYA4|MTMR4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.27490234375	3	495.624538	1483.85178	-0.097998	-4.857E-05	-3.2617	-0.0016166	-3.3597	-0.0016651	495.6227826914019	21.894	0.80913	20.555	20.371	21.18	-1.3386					34	15	3	0	0	0	0.026472	1	208	208		12.433	0.50046	1	55992			34967	2651	28781	28808	38411	38411					0.12921158053541149
LRRREPERRKR	11	Unmodified	_LRRREPERRKR_					0	0	0			REV__ENSG00000112739|ENST00000337659|PRPF4B	REV__ENSG00000112739|ENST00000337659|PRPF4B	MULTI-MSMS	OvCa99_classI_Rep5	1	517.9860229492188	3	517.985346	1550.93421	2.1474	0.0011123	-3.046	-0.0015778	-0.89863	-0.00046548	517.9837026186864	89.091	1.1309	89.091	88.803	89.933	0					92	27	5	0	0	0	0.72582	1	9510	9510		3.4087	0	1	6645600	+		34968	18115	28782	28809	38412	38412					0.18077816176696615
LRRREPERRKR	11	Unmodified	_LRRREPERRKR_					0	0	0			REV__ENSG00000112739|ENST00000337659|PRPF4B	REV__ENSG00000112739|ENST00000337659|PRPF4B	MULTI-MSMS	OvCa99_classI_Rep5	1	518.320068359375	3	517.985346	1550.93421	1.3669	0.00070803	-2.7918	-0.0014461	-1.4249	-0.0007381	517.9835649013266	125.33	0.77364	125.33	125.17	125.95	0					25	18	2	0	0	0	0.72545	1	14495	14495		9.6461	0.84683	1	146840	+		34969	18115	28782	28809	38413	38413					0.18077816176696615
LRRRLLPP	8	Unmodified	_LRRRLLPP_					0	0	0		chr6:87677967-87701450|104|11.35|0.59|4.27|-|1|AKIRIN2,AKIRIN2|1	chr6:87677967-87701450|104|11.35|0.59|4.27|-|1|AKIRIN2,AKIRIN2|1	chr6:87677967-87701450|104|11.35|0.59|4.27|-|1|AKIRIN2,AKIRIN2|1	MULTI-MSMS	OvCa9_classI_Rep2	2	510.84466552734375	2	510.843085	1019.67162	0.099341	5.0748E-05	2.0094	0.0010265	2.1088	0.0010773	510.8440612216227	123.45	4.7392	123.21	122.74	127.48	-0.23193					211	95	5	0	0	0	0.65582	2	12097	12097;12109		52.299	2.2746	1	2560200			34970	521	28783	28810	38414;38415	38414					0.16256847178874523
LRRRRPRHRRR	11	Unmodified	_LRRRRPRHRRR_					0	0	0			REV__ENST00000532915.1_1_11:62538888-62545815:+|nuORF	REV__ENST00000532915.1_1_11:62538888-62545815:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.8628540039062	3	539.012341	1614.01519	0.579	0.00031209	0.51028	0.00027505	1.0893	0.00058714	539.3459921895584	133.09	0.48808	131.97	131.73	132.22	-1.1249					13	9	2	0	0	0	0.026551	1	10694	10694		3.4087	3.0682	1	21520	+		34971	27110	28784	28811	38416	38416					0.23274561730136156
LRRRRSGGDG	10	Unmodified	_LRRRRSGGDG_					0	0	0		ENST00000358077.9_1_9:90113900-90113993:+|nuORF	ENST00000358077.9_1_9:90113900-90113993:+|nuORF	ENST00000358077.9_1_9:90113900-90113993:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.323486328125	2	565.318494	1128.62244	1.2116	0.00068495	-2.716	-0.0015354	-1.5044	-0.00085044	565.3164035768064	157.65	0.45805	157.65	157.45	157.91	0					13	8	2	0	0	0	0.02706	1	18466	18466		23.523	0	1	32126			34972	10728	28785	28812	38417	38417					0.063269071519926
LRRRVPITP	9	Unmodified	_LRRRVPITP_					0	0	0			REV__nc|ENSG00000111554|Q8TC05-4|MDM1	REV__nc|ENSG00000111554|Q8TC05-4|MDM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.7335815429688	2	554.359099	1106.70365	-0.7958	-0.00044116	0.62481	0.00034637	-0.171	-9.4793E-05	554.3592999562566	34.891	0.47252	34.891	34.725	35.198	0					22	9	3	0	0	0	0.027462	1	1718	1718		10.265	0	1	262150	+		34973	18038	28786	28813	38418	38418					0.15456214862024353
LRRRVSLW	8	Unmodified	_LRRRVSLW_					0	0	0		ENST00000425780.5_1_7:76091015-76106455:+|nuORF	ENST00000425780.5_1_7:76091015-76106455:+|nuORF	ENST00000425780.5_1_7:76091015-76106455:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7969970703125	2	543.338167	1084.66178	-0.49623	-0.00026962	0.11058	6.0081E-05	-0.38566	-0.00020954	543.3379869797029	67.847	0.51164	67.847	67.566	68.077	0					22	12	2	0	0	0	0.028476	1	6358	6358		19.36	2.8868	1	579210			34974	11725	28787	28814	38419	38419					0.12283659173499473
LRRRWTFRKWW	11	Unmodified	_LRRRWTFRKWW_					0	0	0		ENST00000313401.3_1_17:30817050-30817605:+|nuORF	ENST00000313401.3_1_17:30817050-30817605:+|nuORF	ENST00000313401.3_1_17:30817050-30817605:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	423.9225769042969	4	423.494293	1689.94807	-1.1801	-0.00049975	-2.0974	-0.00088824	-3.2775	-0.001388	423.7438111926225	43.726	0.6111	40.718	40.378	40.989	-3.0074					15	11	2	0	0	0	0.026562	1	2145	2145		0	0	1	16459			34975	10313	28788	28815	38420	38420					0.130690936757901
LRRSETPQ	8	Unmodified	_LRRSETPQ_					0	0	0		ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENST00000534765.1_1_11:65835264-65836005:+|nuORF	ENST00000534765.1_1_11:65835264-65836005:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.3222351074219	2	493.772522	985.530492	0.34856	0.00017211	4.3873	0.0021663	4.7358	0.0023384	493.77461897412724	78.347	1.2099	76.607	75.987	77.196	-1.7398					41	23	2	0	0	0	0.028476	1	6561	6561		44.117	0	1	98764			34976	13362	28789	28816	38421	38421					0.03714804014953188
LRRSVTLS	8	Unmodified	_LRRSVTLS_					0	0	0		chr16:253751-254381|204|17.83|0.61|4.86|+|0|TE_info:AluY,AluY_dup83798,Alu,SINE,donor,-,253482,253751|None,FAM234A|1	chr16:253751-254381|204|17.83|0.61|4.86|+|0|TE_info:AluY,AluY_dup83798,Alu,SINE,donor,-,253482,253751|None,FAM234A|1	chr16:253751-254381|204|17.83|0.61|4.86|+|0|TE_info:AluY,AluY_dup83798,Alu,SINE,donor,-,253482,253751|None,FAM234A|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	467.2494201660156	2	466.287808	930.561064	-0.23429	-0.00010925	3.948	0.0018409	3.7137	0.0017316	466.28952085193754	76.581	0.89688	73.642	73.175	74.072	-2.9389					24	18	2	0	0	0	0.028476	1	6050	6050		55.504	23.549	1	45383			34977	371	28790	28817	38422	38422					0.09300582399998802
LRRSVTLS	8	Unmodified	_LRRSVTLS_					0	0	0		chr16:253751-254381|204|17.83|0.61|4.86|+|0|TE_info:AluY,AluY_dup83798,Alu,SINE,donor,-,253482,253751|None,FAM234A|1	chr16:253751-254381|204|17.83|0.61|4.86|+|0|TE_info:AluY,AluY_dup83798,Alu,SINE,donor,-,253482,253751|None,FAM234A|1	chr16:253751-254381|204|17.83|0.61|4.86|+|0|TE_info:AluY,AluY_dup83798,Alu,SINE,donor,-,253482,253751|None,FAM234A|1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	466.287808	930.561064	-0.65458	-0.00030522	4.4385	0.0020696	3.7839	0.0017644	466.28962376486675	75.417	1.4524	73.563	73.066	74.518	-1.854	-0.039747	0.00023602	NaN	55.504	34	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19359			34978	371	28790	28817							0.09300582399998802
LRRTIVEHK	9	Unmodified	_LRRTIVEHK_					0	0	0			REV__tr|A0A553SKW7|A0A553SKW7_NIACIExodeoxyribonuclease7largesubunitOS=NialliacirculansOX=1397GN=xseAPE=3SV=1	REV__tr|A0A553SKW7|A0A553SKW7_NIACIExodeoxyribonuclease7largesubunitOS=NialliacirculansOX=1397GN=xseAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	576.3548583984375	2	576.354014	1150.69348	-1.6325	-0.0009409	0.36768	0.00021191	-1.2648	-0.00072899	576.3541628827252	73.012	2.7388	69.615	69.301	72.04	-3.3961					157	56	5	0	0	0	0.46356	1	5624	5624		45.972	5.1941	1	5280500	+		34979	30158	28791	28818	38423	38423					0.1241560713679064
LRRVEQAH	8	Unmodified	_LRRVEQAH_					0	0	0			REV__ENSG00000058453|ENST00000375541|CROCC	REV__ENSG00000058453|ENST00000375541|CROCC	MULTI-MSMS	OvCa99_classI_Rep5	1	504.7879333496094	2	504.788507	1007.56246	1.454	0.00073394	-4.2728	-0.0021568	-2.8188	-0.0014229	504.7862325871211	147.64	1.6122	147.64	147.21	148.82	0					57	32	2	0	0	0	0.66057	1	17260	17260		51.335	1.3109	1	145140	+		34980	16728	28792	28819	38424	38424					0.058982164887424915
LRRVGPGGG	9	Unmodified	_LRRVGPGGG_					0	0	0			REV__ENST00000378509.8_1_7:134001453-134001714:-|nuORF	REV__ENST00000378509.8_1_7:134001453-134001714:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	434.7594299316406	2	434.759218	867.503883	-0.54476	-0.00023684	0.73073	0.00031769	0.18597	8.0851E-05	434.7594502813862	138.35	2.0585	138.12	137.54	139.6	-0.22697					104	41	4	0	0	0	0.64339	1	13766	13766		26.796	0	1	279250	+		34981	25141	28793	28820	38425	38425					0.06483159914296266
LRRVPPLS	8	Unmodified	_LRRVPPLS_					0	0	0			REV__ENSG00000100726|ENST00000262319|TELO2	REV__ENSG00000100726|ENST00000262319|TELO2	MULTI-SECPEP	OvCa99_classI_Rep5	1	469.233154296875	2	469.300719	936.586885	-0.61041	-0.00028647	0.39467	0.00018522	-0.21574	-0.00010125	469.3006841041514	42.22	0.30466	42.22	42.068	42.372	0					9	6	2	0	0	0	0.028476	1	2706	2706		40.573	28.366	1	82362	+		34982	17447	28794	28821	38426	38426					0.11605476642262147
LRRVSIYSL	9	Unmodified	_LRRVSIYSL_					0	0	0			REV__SLC7A9|p.V425Ffs*21|1|0.07|ENSG00000021488|chr19:32833275-32833275|C/-|frameshift_variant	REV__SLC7A9|p.V425Ffs*21|1|0.07|ENSG00000021488|chr19:32833275-32833275|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.8023071289062	2	553.837665	1105.66078	0.49218	0.00027259	-3.501	-0.001939	-3.0088	-0.0016664	553.8353997117325	60.32	0.24753	56.89	56.7	56.947	-3.43					7	4	2	0	0	0	0.027462	1	4081	4081		53.351	9.2347	1	16248	+		34983	16545	28795	28822	38427	38427					0.11217400013924816
LRRWIHFGLVT	11	Unmodified	_LRRWIHFGLVT_					0	0	0			REV__ENST00000519416.5_2_8:38706173-38706524:+|nuORF	REV__ENST00000519416.5_2_8:38706173-38706524:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	466.6077880859375	3	466.610334	1396.80917	-6.6027	-0.0030809	1.5115	0.00070527	-5.0912	-0.0023756	466.61096806232865	159.04	3.2002	157.77	156.69	159.89	-1.267					192	69	4	0	0	0	0.70032	1	13723	13723		29.551	10.288	1	106530	+		34984	27044	28796	28823	38428	38428					0.12664130987627686
LRRWIHFGLVT	11	Unmodified	_LRRWIHFGLVT_					0	0	0			REV__ENST00000519416.5_2_8:38706173-38706524:+|nuORF	REV__ENST00000519416.5_2_8:38706173-38706524:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		3	466.610334	1396.80917	-6.1157	-0.0028537	1.1049	0.00051557	-5.0108	-0.0023381	466.6107876803129	159.36	3.2951	157.77	156.6	159.9	-1.5858	8.5468E-05	-0.00033524	NaN	29.551	217	83	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72550	+		34985	27044	28796	28823							0.12664130987627686
LRRYCLAVL	9	Unmodified	_LRRYCLAVL_					0	0	0		ENST00000409556.5_1_2:86684189-86693535:+|nuORF;ENST00000488971.1_1_2:86683605-86693535:+|nuORF	ENST00000409556.5_1_2:86684189-86693535:+|nuORF	ENST00000409556.5_1_2:86684189-86693535:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8298950195312	2	553.828786	1105.64302	-2.2198	-0.0012294	4.4848	0.0024838	2.2649	0.0012544	553.8311075714116	139.08	3.9663	138.02	135.98	139.95	-1.0595					202	80	4	0	0	0	0.58665	1	11384	11384		33.516	7.9415	1	74733			34986	11530	28797	28824	38429	38429					0.09442361487435846
LRRYKPLKFHT	11	Unmodified	_LRRYKPLKFHT_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-MSMS	OvCa9_classI_Rep2	2	486.95941162109375	3	486.961256	1457.86194	-4.7825	-0.0023289	0.04792	2.3335E-05	-4.7346	-0.0023056	486.9610953135575	160.39	2.6298	160.16	159.25	161.88	-0.22696					128	53	4	0	0	0	0.72548	1	16307	16307		9.2118	0	1	96650	+		34987	22537	28798	28825	38430	38430					0.15132089050416653
LRRYVRPF	8	Unmodified	_LRRYVRPF_					0	0	0			REV__ENST00000434837.7_1_6:37665242-37665689:-|nuORF	REV__ENST00000434837.7_1_6:37665242-37665689:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8295288085938	2	553.832717	1105.65088	-3.0789	-0.0017052	-1.8326	-0.001015	-4.9115	-0.0027201	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.74971	1	11952	11952		26.796	0.10319	1	308210	+		34988	25763	28799	28826	38431	38431					0.10228256799223345
LRSAWAAGLL	10	Unmodified	_LRSAWAAGLL_					0	0	0			REV__ENST00000457043.1_1_1:119683341-119684393:+|nuORF	REV__ENST00000457043.1_1_1:119683341-119684393:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.778076171875	2	529.311284	1056.60801	-0.95266	-0.00050425	3.9062	0.0020676	2.9535	0.0015633	529.3132227761562	94.176	1.0677	92.281	91.847	92.914	-1.8956					36	20	2	0	0	0	0.026849	1	6112	6112		40.778	5.1599	1	161490	+		34989	25830	28800	28827	38432	38432					0.081974419511198
LRSCELLTV	9	Carbamidomethyl (C)	_LRSC(Carbamidomethyl (C))ELLTV_	LRSC(1)ELLTV		LRSC(80)ELLTV		0	1	0			REV__ENSG00000165650|ENST00000334464|PDZD8	REV__ENSG00000165650|ENST00000334464|PDZD8	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.7974243164062	2	545.799891	1089.58523	-1.0542	-0.00057539	0.14651	7.9964E-05	-0.90771	-0.00049543	545.798354390061	88.91	2.8172	86.307	85.882	88.7	-2.6027					128	55	5	0	0	0	0.1804	1	7621	7621		79.713	7.8351	1	806000	+		34990	21104	28801	28828	38433	38433	233				0.04402054771321673
LRSEIKSIV	9	Unmodified	_LRSEIKSIV_					0	0	0		tr|A0A553SRA8|A0A553SRA8_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_00740PE=4SV=1	tr|A0A553SRA8|A0A553SRA8_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_00740PE=4SV=1	tr|A0A553SRA8|A0A553SRA8_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_00740PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	522.8237915039062	2	522.824224	1043.63389	0.6555	0.00034271	-1.635	-0.00085481	-0.97949	-0.0005121	522.8233249021611	80.518	1.853	78.823	78.124	79.977	-1.6951					130	36	6	0	0	0	0.26076	1	6809	6809		67.494	2.0283	1	1770100			34991	34244	28802	28829	38434	38434					0.1138229140274234
LRSGEVVY	8	Unmodified	_LRSGEVVY_					0	0	0		nc|ENSG00000149499|Q32P44-2|EML3;ENSG00000149499|ENST00000394773|EML3	nc|ENSG00000149499|Q32P44-2|EML3	nc|ENSG00000149499|Q32P44-2|EML3	MULTI-MSMS	OvCa99_classI_Rep5	1	461.75311279296875	2	461.753267	921.491981	-0.28675	-0.00013241	-3.1363	-0.0014482	-3.423	-0.0015806	461.7516788238596	23.472	1.6452	23.472	23.042	24.687	0					43	32	2	0	0	0	0.75991	1	356	356		21.702	0.7554	1	80135			34992	5464	28803	28830	38435	38435					0.02809498380418063
LRSGHAEEAGL	11	Unmodified	_LRSGHAEEAGL_					0	0	0			REV__ENST00000464499.5_1_16:70512876-70513152:+|nuORF	REV__ENST00000464499.5_1_16:70512876-70513152:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	570.2899780273438	2	570.293819	1138.57309	-2.1858	-0.0012466	-3.9596	-0.0022581	-6.1454	-0.0035047	570.2913769953735	118.87	1.3845	118.72	118.33	119.72	-0.14755					75	27	4	0	0	0	0.4646	1	11454	11454		56.434	6.8977	1	143160	+		34993	26151	28804	28831	38436	38436					0.009341543525124507
LRSIFIGPVK	10	Unmodified	_LRSIFIGPVK_					0	0	0			REV__ENSG00000124171|ENST00000371610|PARD6B	REV__ENSG00000124171|ENST00000371610|PARD6B	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.3385009765625	2	565.358234	1128.70191	-0.39408	-0.0002228	-2.2266	-0.0012588	-2.6207	-0.0014816	565.3572589882845	28.613	0.14917	28.613	28.489	28.638	0					4	2	2	0	0	0	0.027028	1	940	940		24.519	0	1	26221	+		34994	18669	28805	28832	38437	38437					0.14271161053397918
LRSKPFLGL	9	Unmodified	_LRSKPFLGL_					0	0	0		nc|ENSG00000244694|Q6ZW05-2|PTCHD4;nc|ENSG00000244694|Q6ZW05-4|PTCHD4;ENSG00000244694|ENST00000339488|PTCHD4;nc|ENSG00000244694|Q6ZW05|PTCHD4	nc|ENSG00000244694|Q6ZW05-2|PTCHD4	nc|ENSG00000244694|Q6ZW05-2|PTCHD4	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.7459716796875	2	515.824027	1029.6335	-0.19779	-0.00010202	-0.070613	-3.6424E-05	-0.2684	-0.00013845	515.8245364647943	95.903	0.39227	94.075	93.78	94.172	-1.8286					10	7	2	0	0	0	0.027462	1	6277	6277		37.159	16.212	1	14597			34995	9401	28806	28833	38438	38438					0.11986916473551901
LRSLFGEYRSR	11	Unmodified	_LRSLFGEYRSR_					0	0	0			REV__nc|ENSG00000142513|Q9BZG2-2|ACP4	REV__nc|ENSG00000142513|Q9BZG2-2|ACP4	MULTI-MSMS	OvCa9_classI_Rep4_	4	461.9212951660156	3	461.921237	1382.74188	-0.3032	-0.00014005	-1.0016	-0.00046267	-1.3048	-0.00060272	461.92069539360097	60.88	1.4067	57.45	57.144	58.55	-3.43					89	28	5	0	0	0	0.58642	1	4155	4155		45.908	4.828	1	665300	+		34996	28901	28807	28834	38439	38439					0.06582055986018531
LRSLGATLKH	10	Unmodified	_LRSLGATLKH_					0	0	0		ENSG00000124134|ENST00000537075|KCNS1	ENSG00000124134|ENST00000537075|KCNS1	ENSG00000124134|ENST00000537075|KCNS1	MULTI-MSMS	OvCa9_classI_Rep2	2	548.3345947265625	2	548.33529	1094.65603	-0.67354	-0.00036933	0.0061222	3.357E-06	-0.66742	-0.00036597	548.3353349433302	49.062	1.6355	46.302	45.879	47.514	-2.7603					116	32	5	0	0	0	0.22663	1	3112	3112		90.37	2.6734	1	2328000			34997	3625	28808	28835	38440	38440					0.11248515871147902
LRSLLRFLS	9	Unmodified	_LRSLLRFLS_					0	0	0		ENSG00000176194|ENST00000320477|CIDEA	ENSG00000176194|ENST00000320477|CIDEA	ENSG00000176194|ENST00000320477|CIDEA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.80419921875	2	552.848033	1103.68151	-0.98375	-0.00054387	0.015355	8.4889E-06	-0.9684	-0.00053538	552.8478007366	42.905	0.57718	39.898	39.748	40.326	-3.0074					16	10	2	0	0	0	0.027462	1	2063	2063		31.53	0	1	21019			34998	7589	28809	28836	38441	38441					0.13381990393600063
LRSLQPLPP	9	Unmodified	_LRSLQPLPP_					0	0	0		ENST00000489744.1_1_3:196626921-196632085:+|nuORF	ENST00000489744.1_1_3:196626921-196632085:+|nuORF	ENST00000489744.1_1_3:196626921-196632085:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	510.8130798339844	2	510.813659	1019.61277	0.66577	0.00034009	-0.99665	-0.0005091	-0.33088	-0.00016902	510.81303107097773	129.05	1.0381	127.95	127.51	128.55	-1.1018					49	20	3	0	0	0	0.38529	1	10182	10182		53.351	3.3269	1	128600			34999	12682	28810	28837	38442	38442					0.10374326093892705
LRSNKKFIVY	10	Unmodified	_LRSNKKFIVY_					0	0	0		tr|A0A553SG24|A0A553SG24_NIACIElongationfactorG-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09915PE=4SV=1	tr|A0A553SG24|A0A553SG24_NIACIElongationfactorG-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09915PE=4SV=1	tr|A0A553SG24|A0A553SG24_NIACIElongationfactorG-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09915PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	634.3784790039062	2	634.379697	1266.74484	-5.7659	-0.0036578	3.1969	0.0020281	-2.569	-0.0016297	634.3814892688545	163.56	1.4089	163.33	162.75	164.16	-0.22696					114	47	3	0	0	0	0.76627	1	16692	16692		23.042	2.0956	1	320930			35000	33109	28811	28838	38443	38443					0.12213931110841258
LRSNNKILL	9	Unmodified	_LRSNNKILL_					0	0	0		tr|A0A553SQW2|A0A553SQW2_NIACICPBPfamilyintramembranemetalloproteaseOS=NialliacirculansOX=1397GN=CEQ21_07400PE=4SV=1	tr|A0A553SQW2|A0A553SQW2_NIACICPBPfamilyintramembranemetalloproteaseOS=NialliacirculansOX=1397GN=CEQ21_07400PE=4SV=1	tr|A0A553SQW2|A0A553SQW2_NIACICPBPfamilyintramembranemetalloproteaseOS=NialliacirculansOX=1397GN=CEQ21_07400PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.303955078125	2	535.837665	1069.66078	1.5524	0.00083182	3.9929	0.0021395	5.5452	0.0029713	536.3417152671248	92.342	0.211	92.342	92.174	92.385	0					6	4	2	0	0	0	0.027462	1	9982	9982		39.253	15.05	1	274190			35001	34205	28812	28839	38444	38444					0.1287340001395023
LRSPLPCVSNL	11	Unmodified	_LRSPLPCVSNL_					0	0	0			REV__ENST00000540006.5_1_13:111293886-111296904:-|nuORF	REV__ENST00000540006.5_1_13:111293886-111296904:-|nuORF	MSMS	OvCa99_classI_Rep5	1	599.8359985351562	2	599.834265	1197.65398	NaN	NaN	NaN	NaN	NaN	NaN	NaN	156.04	1	156.04	155.54	156.54	0								0	0	0	0.14817	1	18285	18285		56.434	3.4971	1		+		35002	27343	28813	28840	38445	38445					0.06305719071065141
LRSPYFPGLT	10	Unmodified	_LRSPYFPGLT_					0	0	0			REV__ENSG00000160202|ENST00000291554|CRYAA	REV__ENSG00000160202|ENST00000291554|CRYAA	MULTI-MSMS	OvCa99_classI_Rep5	1	575.8174438476562	2	575.816399	1149.61824	1.6009	0.00092181	1.0462	0.00060244	2.6471	0.0015242	575.8170124478966	112.58	1.2482	112.58	112.25	113.5	0					85	28	5	0	0	0	0.28845	1	12852	12852		82.241	10.945	1	4222100	+		35003	20646	28814	28841	38446	38446					0.04942004885697315
LRSRKARPDL	10	Unmodified	_LRSRKARPDL_					0	0	0		ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000141858|Q6SPF0|SAMD1	ENSG00000141858|ENST00000533683|SAMD1	ENSG00000141858|ENST00000533683|SAMD1	MULTI-MSMS	OvCa9_classI_Rep2	2	606.368896484375	2	606.370195	1210.72584	-3.14	-0.001904	2.1543	0.0013063	-0.98567	-0.00059768	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.73378	1	14830	14830		26.693	1.1189	1	257720			35004	4942	28815	28842	38447	38447					0.12890394539795125
LRSRREQEK	9	Unmodified	_LRSRREQEK_					0	0	0		ENSG00000162714|ENST00000682384|ZNF496;nc|ENSG00000162714|Q96IT1-2|ZNF496	ENSG00000162714|ENST00000682384|ZNF496	ENSG00000162714|ENST00000682384|ZNF496	MULTI-MSMS	OvCa99_classI_Rep5	1	401.230712890625	3	401.230182	1200.66872	1.7875	0.00071722	-2.9123	-0.0011685	-1.1247	-0.00045127	401.2289055864949	73.909	0.80476	73.909	73.636	74.441	0					48	20	3	0	0	0	0.40818	1	7273	7273		51.193	11.94	1	1833800			35005	6219	28816	28843	38448	38448					0.07640927263400954
LRSTSTVTLLS	11	Unmodified	_LRSTSTVTLLS_					0	0	0		nc|ENSG00000263155|P0CAP1-8|MYZAP;nc|ENSG00000263155|P0CAP1-5|MYZAP;nc|ENSG00000263155|P0CAP1-7|MYZAP;nc|ENSG00000263155|P0CAP1-6|MYZAP;nc|ENSG00000263155|P0CAP1-4|MYZAP;nc|ENSG00000263155|P0CAP1-2|MYZAP;ENSG00000263155|ENST00000267853|MYZAP;nc|ENSG00000263155|P0CAP1-11|MYZAP;nc|ENSG00000263155|P0CAP1-10|MYZAP;nc|ENSG00000263155|P0CAP1-9|MYZAP;nc|ENSG00000263155|P0CAP1-3|MYZAP	nc|ENSG00000263155|P0CAP1-8|MYZAP	nc|ENSG00000263155|P0CAP1-8|MYZAP	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3424072265625	2	589.342978	1176.6714	-3.0463	-0.0017953	3.0317	0.0017867	-0.014664	-8.6422E-06	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.72324	1	14962	14962		21.686	4.2177	1	272220			35006	9514	28817	28844	38449	38449					0.09013337877718186
LRTAWRWPR	9	Unmodified	_LRTAWRWPR_					0	0	0			REV__POLE|p.R721Efs*71|1|0.03|ENSG00000177084|chr12:132668369-132668369|C/-|frameshift_variant	REV__POLE|p.R721Efs*71|1|0.03|ENSG00000177084|chr12:132668369-132668369|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.5715637207031	3	414.571991	1240.69414	0.15917	6.5986E-05	-4.2129	-0.0017466	-4.0538	-0.0016806	414.5701603463615	22.263	1.2333	20.925	20.523	21.757	-1.3386					73	29	3	0	0	0	0.63422	1	272	272		21.686	3.8526	1	105330	+		35007	29307	28818	28845	38450	38450					0.08342446576489237
LRTDCHGTRAA	11	Unmodified	_LRTDCHGTRAA_					0	0	0		PPARG|p.Q472Tfs*60|1|0.25|ENSG00000132170|chr3:12434039-12434040|-/A|frameshift_variant	PPARG|p.Q472Tfs*60|1|0.25|ENSG00000132170|chr3:12434039-12434040|-/A|frameshift_variant	PPARG|p.Q472Tfs*60|1|0.25|ENSG00000132170|chr3:12434039-12434040|-/A|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	600.79931640625	2	600.798746	1199.58294	-0.47671	-0.00028641	0.68787	0.00041327	0.21116	0.00012687	600.7990183364485	25.367	2.0509	25.367	25.042	27.092	0					88	40	3	0	0	0	0.72458	1	551	551		23.523	2.5758	1	86682			35008	15513	28819	28846	38451	38451					-0.008869809137422635
LRTERLKI	8	Unmodified	_LRTERLKI_					0	0	0		ENSG00000169962|ENST00000339381|TAS1R3	ENSG00000169962|ENST00000339381|TAS1R3	ENSG00000169962|ENST00000339381|TAS1R3	MSMS	OvCa99_classI_Rep5	1	514.8314208984375	2	514.832383	1027.65021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.997	1	37.997	37.497	38.497	0								0	0	0	0.30129	1	2126	2126		60.972	3.1607	1				35009	7059	28820	28847	38452	38452					0.13749417359508698
LRTFAEIVF	9	Unmodified	_LRTFAEIVF_					0	0	0			REV__ENST00000564733.1_1_16:21666528-21666750:+|nuORF	REV__ENST00000564733.1_1_16:21666528-21666750:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	548.3121948242188	2	548.313492	1094.61243	-0.90645	-0.00049702	-3.2782	-0.0017975	-4.1846	-0.0022945	548.3115968054894	50.279	1.3471	50.279	49.944	51.291	0					98	30	5	0	0	0	0.21395	1	3791	3791		73.975	5.1879	1	4443600	+		35010	22885	28821	28848	38453	38453					0.0689090637404206
LRTFPWLIHEL	11	Unmodified	_LRTFPWLIHEL_					0	0	0			REV__ENSG00000118308|ENST00000556887|IRAG2	REV__ENSG00000118308|ENST00000556887|IRAG2	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.6090393066406	3	475.606478	1423.79761	-0.31997	-0.00015218	3.7336	0.0017757	3.4136	0.0016235	475.6082822814047	81.327	2.6289	78.616	78.297	80.926	-2.7106					180	53	6	0	0	0	0.68059	1	6723	6723		36.318	1.1394	1	5314900	+		35011	18391	28822	28849	38454	38454					0.1026588917366098
LRTFVLPV	8	Unmodified	_LRTFVLPV_					0	0	0		ENSG00000076662|ENST00000160262|ICAM3	ENSG00000076662|ENST00000160262|ICAM3	ENSG00000076662|ENST00000160262|ICAM3	MULTI-MSMS	OvCa99_classI_Rep5	1	472.8015441894531	2	472.80002	943.585488	2.0455	0.00096711	-0.21679	-0.0001025	1.8287	0.00086461	472.7997719435708	128.83	1.6379	128.83	128.51	130.15	0					78	34	4	0	0	0	0.64377	1	14962	14962		54.765	3.4292	1	2173400			35012	1557	28823	28850	38455	38455					0.1114384255351979
LRTGKQQL	8	Unmodified	_LRTGKQQL_					0	0	0			REV__tr|A0A553SGG0|A0A553SGG0_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_10750PE=4SV=1	REV__tr|A0A553SGG0|A0A553SGG0_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_10750PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	472.28741455078125	2	472.287808	942.561064	-4.0924	-0.0019328	4.1769	0.0019727	0.084517	3.9916E-05	472.28971542959135	151.08	2.3118	150.13	149.45	151.76	-0.95645					105	45	4	0	0	0	0.74971	1	12824	12824		26.796	3.7536	1	815680	+		35013	29696	28824	28851	38456	38456					0.08748582399982752
LRTILMAEL	9	Unmodified	_LRTILMAEL_					0	0	0			REV__ENSG00000221909|ENST00000449309|FAM200A	REV__ENSG00000221909|ENST00000449309|FAM200A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.3023681640625	2	530.315177	1058.6158	-0.87795	-0.00046559	3.5058	0.0018592	2.6279	0.0013936	530.3171253893229	47.401	0.34866	44.306	44.147	44.495	-3.0944					8	6	2	0	0	0	0.027353	1	2539	2539		93.195	2.8256	1	15142	+		35014	23346	28825	28852	38457	38457					0.08883833156392029
LRTIPHLK	8	Unmodified	_LRTIPHLK_					0	0	0			REV__nc|ENSG00000101350|O15066-2|KIF3B	REV__nc|ENSG00000101350|O15066-2|KIF3B	MULTI-MSMS	OvCa9_classI_Rep2	2	489.3138122558594	2	489.316369	976.618185	-2.9034	-0.0014207	-1.3918	-0.00068104	-4.2952	-0.0021017	489.3155696010777	150.8	1.5265	150.57	150.17	151.7	-0.22696					77	30	4	0	0	0	0.74394	1	15349	15349		13.775	1.5685	1	380370	+		35015	17493	28826	28853	38458	38458					0.12894049676378927
LRTKKKYI	8	Unmodified	_LRTKKKYI_					0	0	0			REV__nc|ENSG00000165929|Q8N9U0-2|TC2N	REV__nc|ENSG00000165929|Q8N9U0-2|TC2N	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2425537109375	2	525.345126	1048.6757	-1.3063	-0.00068624	0.87441	0.00045937	-0.43185	-0.00022687	525.3455474249374	65.731	0.47737	65.731	65.426	65.904	0					27	11	3	0	0	0	0.028476	1	6056	6056		25.45	5.4534	1	475150	+		35016	21140	28827	28854	38459	38459					0.15330891881944808
LRTLASHQR	9	Unmodified	_LRTLASHQR_					0	0	0			REV__TYK2|p.R235Ifs*32|1|0.12|ENSG00000105397|chr19:10365826-10365827|-/GGTTGGCCAATCTGATG|frameshift_variant	REV__TYK2|p.R235Ifs*32|1|0.12|ENSG00000105397|chr19:10365826-10365827|-/GGTTGGCCAATCTGATG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	541.315185546875	2	541.314889	1080.61522	-0.15857	-8.5836E-05	0.15928	8.6222E-05	0.0007132	3.8607E-07	541.3147931507731	134.52	0.98869	133.39	133.06	134.05	-1.1226					41	18	3	0	0	0	0.31747	1	10846	10846		60.972	0.85368	1	69775	+		35017	17721	28828	28855	38460	38460					0.0781417455157225
LRTLDLHNI	9	Unmodified	_LRTLDLHNI_					0	0	0			REV__TTC12|p.L695Afs*10|1|0.03|ENSG00000149292|chr11:113366264-113366265|-/G|frameshift_variant	REV__TTC12|p.L695Afs*10|1|0.03|ENSG00000149292|chr11:113366264-113366265|-/G|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.7561645507812	2	547.819473	1093.62439	1.4753	0.00080819	4.093	0.0022422	5.5683	0.0030504	547.8216114094091	112.36	0.59142	112.36	112.06	112.66	0					28	12	3	0	0	0	0.027462	1	12822	12822		37.812	8.6415	1	545760	+		35018	20154	28829	28856	38461	38461					0.0813252311722863
LRTLIDFKT	9	Unmodified	_LRTLIDFKT_					0	0	0			REV__tr|A0A553SGU7|A0A553SGU7_NIACIDEAD-boxATP-dependentRNAhelicaseCshAOS=NialliacirculansOX=1397GN=cshAPE=3SV=1	REV__tr|A0A553SGU7|A0A553SGU7_NIACIDEAD-boxATP-dependentRNAhelicaseCshAOS=NialliacirculansOX=1397GN=cshAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8297119140625	2	553.832049	1105.64954	-0.12008	-6.6502E-05	-3.596	-0.0019916	-3.7161	-0.0020581	553.8299276335473	138.55	4.0786	138.32	136.16	140.24	-0.22696					182	83	3	0	0	0	0.69403	1	13968	13968		19.997	2.6318	1	64451	+		35019	29740	28830	28857	38462	38462					0.10094577919812764
LRTLPRWLVE	10	Unmodified	_LRTLPRWLVE_					0	0	0			REV__ENST00000599652.5_1_19:49965164-49969478:+|nuORF	REV__ENST00000599652.5_1_19:49965164-49969478:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8827514648438	2	641.885147	1281.75574	-4.6434	-0.0029805	0.6524	0.00041876	-3.991	-0.0025618	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.79917	1	15801	15801		19.104	3.4617	1	543390	+		35020	28025	28831	28858	38463	38463					0.12613333485114708
LRTLQQEAVA	10	Unmodified	_LRTLQQEAVA_					0	0	0		nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;OSBPL5|p.P786Sfs*56|1|0.44|ENSG00000021762|chr11:3090600-3090601|-/CT|frameshift_variant;ENSG00000021762|ENST00000263650|OSBPL5	nc|ENSG00000021762|Q9H0X9-3|OSBPL5	nc|ENSG00000021762|Q9H0X9-3|OSBPL5	MULTI-MSMS	OvCa99_classI_Rep5	1	564.8240966796875	2	564.822212	1127.62987	0.33455	0.00018896	-0.68596	-0.00038745	-0.35141	-0.00019849	564.8217410684217	58.423	0.89312	58.423	58.153	59.046	0					48	21	4	0	0	0	0.3094	1	4958	4958		79.713	0	1	4093900			35021	1028	28832	28859	38464	38464					0.07116201909047959
LRTMIYKEIQ	10	Unmodified	_LRTMIYKEIQ_					0	0	0			REV__ENSG00000154710|ENST00000284957|RABGEF1	REV__ENSG00000154710|ENST00000284957|RABGEF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	647.831298828125	2	647.863023	1293.71149	0.38889	0.00025195	3.9283	0.002545	4.3172	0.002797	647.8655619506325	63.99	0.14644	60.515	60.442	60.588	-3.475					4	2	2	0	0	0	0.026968	1	4531	4531		36.447	9.3994	1	18601	+		35022	20393	28833	28860	38465	38465					0.07638561276644396
LRTNLQPLEST	11	Unmodified	_LRTNLQPLEST_					0	0	0		ENSG00000131153|ENST00000253462|GINS2	ENSG00000131153|ENST00000253462|GINS2	ENSG00000131153|ENST00000253462|GINS2	MULTI-SECPEP	OvCa9_classI_Rep3	3	425.5630798339844	3	424.569981	1270.68811	1.0741	0.00045603	1.6474	0.00069943	2.7215	0.0011555	424.905368961472	70.693	0.46367	67.974	67.699	68.163	-2.7196					13	8	2	0	0	0	0.026015	1	3236	3236		40.015	22.182	1	17092			35023	4047	28834	28861	38466	38466					0.06359838763637526
LRTQDSLLR	9	Unmodified	_LRTQDSLLR_					0	0	0			REV__DLG5|p.K1005Gfs*109|1|0.22|ENSG00000151208|chr10:77821432-77821471|TTCTGGGAGGTTTTGGGGGTGTCAGAGGCCCCGCCCTCTT/-|frameshift_variant	REV__DLG5|p.K1005Gfs*109|1|0.22|ENSG00000151208|chr10:77821432-77821471|TTCTGGGAGGTTTTGGGGGTGTCAGAGGCCCCGCCCTCTT/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	551.32275390625	2	551.32238	1100.63021	-0.63339	-0.0003492	0.87916	0.0004847	0.24577	0.0001355	551.3227795571428	38.64	0.48737	38.64	38.394	38.882	0					24	10	3	0	0	0	0.22621	1	2209	2209		71.877	2.2498	1	441290	+		35024	16303	28835	28862	38467	38467					0.08391621628902612
LRTQGLAGL	9	Unmodified	_LRTQGLAGL_					0	0	0		ENSG00000182902|ENST00000327451|SLC25A18	ENSG00000182902|ENST00000327451|SLC25A18	ENSG00000182902|ENST00000327451|SLC25A18	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.75335693359375	2	464.782359	927.550165	-0.1146	-5.3264E-05	-2.191	-0.0010183	-2.3056	-0.0010716	464.7808541580593	47.502	0.49899	44.395	44.185	44.684	-3.1077					12	9	2	0	0	0	0.027433	1	2570	2570		38.806	9.6566	1	14382			35025	8037	28836	28863	38468	38468					0.08349180025709302
LRTQKLHTQ	9	Unmodified	_LRTQKLHTQ_					0	0	0		nc|ENSG00000164556|Q6ZVS7|CFAP144P1	nc|ENSG00000164556|Q6ZVS7|CFAP144P1	nc|ENSG00000164556|Q6ZVS7|CFAP144P1	MULTI-MSMS	OvCa99_classI_Rep5	1	562.83251953125	2	562.830372	1123.64619	0.81588	0.0004592	-1.3749	-0.00077385	-0.55904	-0.00031465	562.8296303486356	67.278	2.4843	67.278	66.7	69.184	0					188	61	5	0	0	0	0.10363	2	6328	6328;6390		96.19	5.8206	1	92664000			35026	15146	28837	28864	38469;38470	38469					0.08931327865798266
LRTRKEQVRTW	11	Unmodified	_LRTRKEQVRTW_					0	0	0			REV__ENST00000397642.3_1_1:247394123-247394771:+|nuORF	REV__ENST00000397642.3_1_1:247394123-247394771:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	491.6224060058594	3	491.61967	1471.83718	2.9772	0.0014636	3.258	0.0016017	6.2352	0.0030653	491.62136011545385	27.455	0.3833	24.745	24.61	24.994	-2.7097					21	8	3	0	0	0	0.72493	1	477	477		16.53	3.5724	1	41120	+		35027	25358	28838	28865	38471	38471					0.12013409177075118
LRTRLLLN	8	Unmodified	_LRTRLLLN_					0	0	0			REV__ENSG00000168071|ENST00000356786|CCDC88B	REV__ENSG00000168071|ENST00000356786|CCDC88B	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.2601013183594	2	499.827101	997.639649	0.38706	0.00019346	0.16817	8.4057E-05	0.55523	0.00027752	499.8270054214565	72.471	0.67743	72.471	72.086	72.764	0					23	16	2	0	0	0	0.028476	1	7008	7008		17.365	0	1	292710	+		35028	21344	28839	28866	38472	38472					0.1407343470508522
LRVAQRTLE	9	Unmodified	_LRVAQRTLE_					0	0	0			REV__nc|ENSG00000130023|Q5T6L9-4|ERMARD	REV__nc|ENSG00000130023|Q5T6L9-4|ERMARD	MULTI-MSMS	OvCa9_classI_Rep2	2	543.3232421875	2	543.324922	1084.63529	0.054576	2.9652E-05	-0.27875	-0.00015145	-0.22418	-0.0001218	543.3247413975346	64.933	1.7204	62.208	61.917	63.637	-2.7245					94	33	5	0	0	0	0.40667	1	5010	5010		51.335	1.7994	1	1066900	+		35029	18915	28840	28867	38473	38473					0.09635925491488706
LRVCILRCV	9	Unmodified	_LRVCILRCV_					0	0	0			REV__ENST00000326764.9_2_19:54972187-54972391:+|nuORF	REV__ENST00000326764.9_2_19:54972187-54972391:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.788818359375	2	537.817364	1073.62018	0.21315	0.00011463	-1.6707	-0.00089851	-1.4575	-0.00078387	537.8165142208468	57.642	0.20917	57.642	57.566	57.775	0					5	4	2	0	0	0	0.027462	1	4858	4858		30.504	14.03	1	79018	+		35030	24493	28841	28868	38474	38474					0.08631019098288562
LRVCRRSSR	9	Unmodified	_LRVCRRSSR_					0	0	0			REV__ENSG00000159723|ENST00000290953|AGRP	REV__ENSG00000159723|ENST00000290953|AGRP	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.81103515625	2	566.82764	1131.64073	0.3126	0.00017719	-3.7803	-0.0021428	-3.4677	-0.0019656	566.8256084848962	113.93	0.9691	112.88	112.63	113.6	-1.055					26	18	3	0	0	0	0.027462	1	8429	8429		26.693	3.6504	1	15764	+		35031	20625	28842	28869	38475	38475					0.08017325802347841
LRVCRRSSR	9	Unmodified	_LRVCRRSSR_					0	0	0			REV__ENSG00000159723|ENST00000290953|AGRP	REV__ENSG00000159723|ENST00000290953|AGRP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	566.82764	1131.64073	0.55657	0.00031548	-3.7482	-0.0021246	-3.1916	-0.0018091	566.8257574994124	112.85	0.5911	112.72	112.48	113.07	-0.12174	-0.083389	0.00071067	NaN	26.693	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15544	+		35032	20625	28842	28869							0.08017325802347841
LRVFLSRK	8	Unmodified	_LRVFLSRK_					0	0	0			REV__nc|ENSG00000112851|Q96RT1-6|ERBIN	REV__nc|ENSG00000112851|Q96RT1-6|ERBIN	MULTI-MSMS	OvCa99_classI_Rep5	1	509.8313293457031	2	509.829643	1017.64473	-0.00038962	-1.9864E-07	0.98741	0.00050341	0.98702	0.00050321	509.8299641372915	73.564	0.71236	73.564	73.195	73.907	0					46	17	4	0	0	0	0.62474	1	7226	7226		58.782	7.4465	1	1881400	+		35033	28801	28843	28870	38476	38476					0.13661738567691373
LRVGAEGLKR	10	Unmodified	_LRVGAEGLKR_					0	0	0			REV__ENST00000404369.8_1_7:22539928-22540015:-|nuORF	REV__ENST00000404369.8_1_7:22539928-22540015:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	550.83544921875	2	549.840739	1097.66693	0.54866	0.00030168	-0.95246	-0.0005237	-0.4038	-0.00022202	549.8401353640714	44.686	0.59613	41.976	41.603	42.199	-2.7097					17	11	2	0	0	0	0.027193	1	2533	2533		22.58	2.5829	1	26475	+		35034	25433	28844	28871	38477	38477					0.12199918245482877
LRVGAEGLKR	10	Unmodified	_LRVGAEGLKR_					0	0	0			REV__ENST00000404369.8_1_7:22539928-22540015:-|nuORF	REV__ENST00000404369.8_1_7:22539928-22540015:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	549.840739	1097.66693	-1.2238	-0.00067287	1.1249	0.00061849	-0.09889	-5.4374E-05	549.8412966251857	44.842	1.2913	41.803	41.514	42.805	-3.0385	-0.086452	0.00085381	NaN	22.58	33	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48781	+		35035	25433	28844	28871							0.12199918245482877
LRVGDQILRVN	11	Unmodified	_LRVGDQILRVN_					0	0	0		ENSG00000095397|ENST00000362057|WHRN;ENST00000480518.1_1_9:117265889-117266592:-|nuORF;nc|ENSG00000095397|Q9P202-2|WHRN	ENSG00000095397|ENST00000362057|WHRN	ENSG00000095397|ENST00000362057|WHRN	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8825073242188	2	641.883136	1281.75172	-5.3554	-0.0034376	4.4876	0.0028805	-0.86781	-0.00055703	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.7046	1	12957	12957		28.081	0.19925	1	804890			35036	1928	28845	28872	38478	38478					0.12211243991396259
LRVGIGLYMSI	11	Unmodified	_LRVGIGLYMSI_					0	0	0			REV__tr|A0A7D6ZHT6|A0A7D6ZHT6_9CLOTAECfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_00910PE=3SV=1	REV__tr|A0A7D6ZHT6|A0A7D6ZHT6_9CLOTAECfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_00910PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3554077148438	2	611.354834	1220.69511	-2.3862	-0.0014588	4.2549	0.0026013	1.8688	0.0011425	611.3572929291362	147.43	3.7918	146.48	144.56	148.35	-0.9512					254	75	5	0	0	0	0.71498	1	12339	12339		24.519	2.5593	1	250910	+		35037	32037	28846	28873	38479	38479					0.09359480110538243
LRVGSTPQI	9	Unmodified	_LRVGSTPQI_					0	0	0		tr|A0A7D6VMT7|A0A7D6VMT7_9CLOTCarbohydratebindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13070PE=4SV=1	tr|A0A7D6VMT7|A0A7D6VMT7_9CLOTCarbohydratebindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13070PE=4SV=1	tr|A0A7D6VMT7|A0A7D6VMT7_9CLOTCarbohydratebindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13070PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	485.78973388671875	2	485.787641	969.56073	2.2132	0.0010752	-0.55328	-0.00026877	1.66	0.00080639	485.7873788778964	76.255	0.68241	76.255	75.996	76.678	0					42	16	4	0	0	0	0.27001	1	7620	7620		66.429	3.123	1	2186300			35038	34669	28847	28874	38480	38480					0.07473162680128098
LRVGSTPQI	9	Unmodified	_LRVGSTPQI_					0	0	0		tr|A0A7D6VMT7|A0A7D6VMT7_9CLOTCarbohydratebindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13070PE=4SV=1	tr|A0A7D6VMT7|A0A7D6VMT7_9CLOTCarbohydratebindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13070PE=4SV=1	tr|A0A7D6VMT7|A0A7D6VMT7_9CLOTCarbohydratebindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13070PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	485.787641	969.56073	-0.63245	-0.00030724	0.65151	0.00031649	0.019059	9.2588E-06	485.7878615314935	78.677	1.0944	76.324	76.048	77.142	-2.3527	-0.079653	0.00068155	NaN	66.429	36	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56494			35039	34669	28847	28874							0.07473162680128098
LRVGSTPQI	9	Unmodified	_LRVGSTPQI_					0	0	0		tr|A0A7D6VMT7|A0A7D6VMT7_9CLOTCarbohydratebindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13070PE=4SV=1	tr|A0A7D6VMT7|A0A7D6VMT7_9CLOTCarbohydratebindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13070PE=4SV=1	tr|A0A7D6VMT7|A0A7D6VMT7_9CLOTCarbohydratebindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13070PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	485.787641	969.56073	-0.26151	-0.00012704	0.14195	6.896E-05	-0.11956	-5.8079E-05	485.78772324648867	79.384	0.52007	76.633	76.418	76.938	-2.7514	0.22853	0.00018648	NaN	66.429	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63997			35040	34669	28847	28874							0.07473162680128098
LRVIGSIKLT	10	Unmodified	_LRVIGSIKLT_					0	0	0			REV__tr|A0A7D6VPT2|A0A7D6VPT2_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12890PE=3SV=1	REV__tr|A0A7D6VPT2|A0A7D6VPT2_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12890PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.3043823242188	2	550.363516	1098.71248	-0.43052	-0.00023694	0.36802	0.00020255	-0.062496	-3.4396E-05	550.3640948873871	63.654	0.28464	60.179	60.061	60.345	-3.475					9	5	3	0	0	0	0.024273	1	4483	4483		153.04	37.542	1	72295	+		35041	31273	28848	28875	38481	38481					0.16707143707844807
LRVIRSLYS	9	Unmodified	_LRVIRSLYS_					0	0	0		nc|ENSG00000122741|Q5QP82-2|DCAF10;ENSG00000122741|ENST00000377724|DCAF10	nc|ENSG00000122741|Q5QP82-2|DCAF10	nc|ENSG00000122741|Q5QP82-2|DCAF10	MULTI-MSMS	OvCa99_classI_Rep5	1	553.839599609375	2	553.837665	1105.66078	0.40285	0.00022312	-0.019826	-1.098E-05	0.38303	0.00021214	553.8375527772995	73.942	0.53641	73.942	73.678	74.214	0					43	13	4	0	0	0	0.21231	1	7271	7271		74.255	0	1	7115200			35042	3555	28849	28876	38482	38482					0.11217400013924816
LRVKDFML	8	Unmodified	_LRVKDFML_					0	0	0		tr|A0A7D6ZW82|A0A7D6ZW82_9CLOTABC-FfamilyATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17975PE=4SV=1	tr|A0A7D6ZW82|A0A7D6ZW82_9CLOTABC-FfamilyATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17975PE=4SV=1	tr|A0A7D6ZW82|A0A7D6ZW82_9CLOTABC-FfamilyATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17975PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.7672119140625	2	511.296788	1020.57902	1.5594	0.00079734	0.42646	0.00021805	1.9859	0.0010154	511.2967284062953	83.649	0.75758	83.649	83.419	84.177	0					33	17	3	0	0	0	0.028476	1	8711	8711		53.351	12.779	1	1153300			35043	35829	28850	28877	38483	38483					0.0695558133047598
LRVKKKME	8	Unmodified	_LRVKKKME_					0	0	0		MYH6|p.K1758Lfs*37|1|0.03|ENSG00000197616|chr14:23384933-23384934|-/TGAG|frameshift_variant;ENSG00000197616|ENST00000405093|MYH6;ENSG00000092054|ENST00000355349|MYH7	MYH6|p.K1758Lfs*37|1|0.03|ENSG00000197616|chr14:23384933-23384934|-/TGAG|frameshift_variant	MYH6|p.K1758Lfs*37|1|0.03|ENSG00000197616|chr14:23384933-23384934|-/TGAG|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	516.3233032226562	2	516.323337	1030.63212	-0.50448	-0.00026047	-3.2461	-0.001676	-3.7505	-0.0019365	516.3215153368826	61.174	0.72587	61.174	60.859	61.585	0					52	16	4	0	0	0	0.66704	1	5363	5363		50.025	0.58299	1	3888700			35044	8730	28851	28878	38484	38484					0.11802959113174438
LRVKSTAGRRK	11	Unmodified	_LRVKSTAGRRK_					0	0	0		ENSG00000174339|ENST00000307832|OR2Y1	ENSG00000174339|ENST00000307832|OR2Y1	ENSG00000174339|ENST00000307832|OR2Y1	MULTI-MSMS	OvCa9_classI_Rep4_	4	636.3984375	2	636.40457	1270.79459	-6.0266	-0.0038353	-3.6451	-0.0023198	-9.6717	-0.0061551	636.4021340969482	159.63	1.4705	158.02	157.73	159.2	-1.6101					96	32	4	0	0	0	0.72479	1	15784	15784		18.262	2.6203	1	297970			35045	7458	28852	28879	38485	38485					0.17002058839511847
LRVLAKEPEL	10	Unmodified	_LRVLAKEPEL_					0	0	0			REV__ENSG00000205669|ENST00000645972|ACOT6	REV__ENSG00000205669|ENST00000645972|ACOT6	MULTI-MSMS	OvCa9_classI_Rep2	2	584.356201171875	2	584.358431	1166.70231	-2.312	-0.0013511	-1.149	-0.00067141	-3.461	-0.0020225	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.7759	1	14478	14478		21.96	1.013	1	180810	+		35046	23222	28853	28880	38486	38486					0.1256253598260173
LRVLGGTSP	9	Unmodified	_LRVLGGTSP_					0	0	0		ENST00000579241.1_1_17:73486365-73488110:+|nuORF;ENST00000585105.5_1_17:73482215-73489290:+|nuORF;ENST00000581085.5_1_17:73467944-73489290:+|nuORF;KIAA0195|p.S895Pfs*13|1|0.43|ENSG00000177728|chr17:75494982-75494982|C/-|frameshift_variant;KIAA0195|p.D945Qfs*32|1|0.36|ENSG00000177728|chr17:75495386-75495387|-/ACAGTTGCTGAGGGTAGGGCCAGTACCCCCT|frameshift_variant;ENSG00000177728|ENST00000314256|TMEM94;nc|ENSG00000177728|Q12767-3|TMEM94;nc|ENSG00000177728|Q12767-2|TMEM94	ENST00000579241.1_1_17:73486365-73488110:+|nuORF	ENST00000579241.1_1_17:73486365-73488110:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	450.2699890136719	2	450.269084	898.523616	1.3254	0.0005968	-1.7002	-0.00076554	-0.37475	-0.00016874	450.2680012991639	61.146	3.3168	58.387	57.67	60.987	-2.7593					139	63	5	0	0	0	0.40667	1	4539	4539		51.335	3.6781	1	6706400			35047	7707	28854	28881	38487	38487					0.07029491134380805
LRVLILKVMSS	11	Unmodified	_LRVLILKVMSS_					0	0	0			REV__WFS1|p.W639R|1|0.05|ENSG00000109501|chr4:6301710-6301710|T/A|missense_variant	REV__WFS1|p.W639R|1|0.05|ENSG00000109501|chr4:6301710-6301710|T/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	420.25250244140625	3	420.268698	1257.78426	0.24328	0.00010224	3.8607	0.0016225	4.104	0.0017248	420.2689468646124	109.97	0.26298	108.37	108.28	108.54	-1.6011					8	4	3	0	0	0	0.025955	1	10119	10119		37.508	11.445	1	8380.4	+		35048	32758	28855	28882	38488	38488					0.1656831507004881
LRVLSALLD	9	Unmodified	_LRVLSALLD_					0	0	0			REV__ENST00000482722.5_1_1:40776933-40777795:-|nuORF	REV__ENST00000482722.5_1_1:40776933-40777795:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	500.3123474121094	2	500.313492	998.612431	0.37155	0.00018589	-0.7555	-0.00037799	-0.38395	-0.00019209	500.31302313941114	128.99	2.6573	127.9	127.57	130.22	-1.0933					135	53	5	0	0	0	0.44568	1	10285	10285		47.657	0	1	747300	+		35049	25014	28856	28883	38489	38489					0.11306906374034043
LRVMLKRAEE	10	Unmodified	_LRVMLKRAEE_					0	0	0			REV__NBAS|p.F1122Sfs*13|1|0.03|ENSG00000151779|chr2:15379827-15379828|-/ATCTGTACCTGTG|frameshift_variant	REV__NBAS|p.F1122Sfs*13|1|0.03|ENSG00000151779|chr2:15379827-15379828|-/ATCTGTACCTGTG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	622.7855834960938	2	622.860815	1243.70708	0.98556	0.00061387	-1.9486	-0.0012137	-0.96308	-0.00059986	622.8595964834435	81.308	1.9081	81.308	80.399	82.307	0					70	45	2	0	0	0	0.027033	1	8375	8375		21.96	0	1	332700	+		35050	20255	28857	28884	38490	38490					0.0949709685369271
LRVPKPPI	8	Unmodified	_LRVPKPPI_					0	0	0			REV__nc|ENSG00000186635|Q96P48-3|ARAP1	REV__nc|ENSG00000186635|Q96P48-3|ARAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	460.3091735839844	2	460.308013	918.601472	1.6098	0.000741	0.45973	0.00021162	2.0695	0.00095262	460.30807384979107	127.12	0.71011	127.12	126.83	127.54	0					33	15	3	0	0	0	0.57878	2	14718	14696;14718		68.485	22.533	1	576710	+		35051	22603	28858	28885	38491;38492	38492					0.13891548790400066
LRVPLLGLPLR	11	Unmodified	_LRVPLLGLPLR_					0	0	0			REV__ENST00000555638.5_1_14:67940311-67953837:-|nuORF	REV__ENST00000555638.5_1_14:67940311-67953837:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	623.9175415039062	2	623.921532	1245.82851	-5.6275	-0.0035111	-0.80944	-0.00050503	-6.4369	-0.0040161	623.9209249558969	163.4	0.91801	163.18	162.75	163.67	-0.22696					66	30	3	0	0	0	0.72576	1	16630	16630		5.5578	2.1478	1	62419	+		35052	27545	28859	28886	38493	38493					0.21543087278541861
LRVPLPHR	8	Unmodified	_LRVPLPHR_					0	0	0		chr5:151664235-151667467|88|415.36|0.15|11.48|-|0|SPARC,SPARC|1	chr5:151664235-151667467|88|415.36|0.15|11.48|-|0|SPARC,SPARC|1	chr5:151664235-151667467|88|415.36|0.15|11.48|-|0|SPARC,SPARC|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.760986328125	2	494.314161	986.613768	0.78976	0.00039039	2.0585	0.0010175	2.8483	0.0014079	494.3150397080411	132.34	0.88811	132.11	131.88	132.77	-0.22697					30	17	3	0	0	0	0.028476	1	13097	13097		26.796	2.5934	1	29421			35053	497	28860	28887	38494	38494					0.11992585253460675
LRVQCSTCRQ	10	Unmodified	_LRVQCSTCRQ_					0	0	0		nc|ENSG00000185345|O60260-3|PRKN;nc|ENSG00000185345|O60260-7|PRKN;nc|ENSG00000185345|O60260-5|PRKN;nc|ENSG00000185345|O60260-8|PRKN;nc|ENSG00000185345|O60260-2|PRKN;ENSG00000185345|ENST00000366898|PRKN	nc|ENSG00000185345|O60260-3|PRKN	nc|ENSG00000185345|O60260-3|PRKN	MULTI-MSMS	OvCa99_classI_Rep5	1	597.2974243164062	2	597.297524	1192.5805	-0.30099	-0.00017978	0.22269	0.00013301	-0.078305	-4.6771E-05	597.2974861978292	28.827	2.5828	28.827	28.588	31.171	0					97	51	3	0	0	0	0.75313	1	1051	1051		24.519	0.31644	1	148510			35054	8249	28861	28888	38495	38495					-0.008091526430689555
LRVQLQRLI	9	Unmodified	_LRVQLQRLI_					0	0	0		ENST00000311117.7_1_7:104716496-104717548:+|nuORF	ENST00000311117.7_1_7:104716496-104717548:+|nuORF	ENST00000311117.7_1_7:104716496-104717548:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2787475585938	2	569.874582	1137.73461	2.8765	0.0016392	-0.44284	-0.00025236	2.4336	0.0013869	569.8741824613004	99.043	0.44038	99.043	98.877	99.318	0					15	10	2	0	0	0	0.027462	1	10921	10921		31.955	0	1	356420			35055	10292	28862	28889	38496	38496					0.1712536817626642
LRVRNLLLM	9	Unmodified	_LRVRNLLLM_					0	0	0			REV__ENST00000254770.2_1_7:55468873-55469005:+|nuORF	REV__ENST00000254770.2_1_7:55468873-55469005:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	564.3651733398438	2	564.357711	1126.70087	2.9137	0.0016444	-0.42006	-0.00023706	2.4937	0.0014073	564.3573021153861	94.542	0.93961	94.542	94.264	95.204	0					55	21	4	0	0	0	0.44294	1	10280	10280		47.916	0	1	3300300	+		35056	23880	28863	28890	38497	38497					0.14258623412865745
LRVTWSLE	8	Unmodified	_LRVTWSLE_					0	0	0		ENST00000295958.9_2_4:39606797-39640607:-|nuORF	ENST00000295958.9_2_4:39606797-39640607:-|nuORF	ENST00000295958.9_2_4:39606797-39640607:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.2831115722656	2	502.282192	1002.54983	-1.6194	-0.00081338	1.3058	0.00065588	-0.31357	-0.0001575	502.2826598778731	95.456	2.0076	92.988	92.711	94.718	-2.4685					104	39	4	0	0	0	0.38598	1	8402	8402		90.777	5.6158	1	1323100			35057	10128	28864	28891	38498	38498					0.04865760305847289
LRWGDKANE	9	Unmodified	_LRWGDKANE_					0	0	0			REV__tr|A0A7D6VVQ4|A0A7D6VVQ4_9CLOTDUF4177domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06565PE=4SV=1	REV__tr|A0A7D6VVQ4|A0A7D6VVQ4_9CLOTDUF4177domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06565PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	544.7794189453125	2	544.777805	1087.54106	1.5844	0.00086316	1.4005	0.00076293	2.9849	0.0016261	544.7783465181305	61.638	1.529	58.569	57.997	59.526	-3.0685					84	39	3	0	0	0	0.62352	1	2215	2215		29.15	2.3535	1	38046	+		35058	31731	28865	28892	38499	38499					0.0007878666935994261
LRWKRNLLVLW	11	Unmodified	_LRWKRNLLVLW_					0	0	0		tr|A0A553SG88|A0A553SG88_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_10385PE=4SV=1	tr|A0A553SG88|A0A553SG88_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_10385PE=4SV=1	tr|A0A553SG88|A0A553SG88_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_10385PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.7601318359375	3	499.645267	1495.91397	0.025064	1.2523E-05	-4.3143	-0.0021556	-4.2893	-0.0021431	499.9775569311384	79.643	0.50879	77.303	77.103	77.612	-2.3399					15	9	2	0	0	0	0.026344	1	4293	4293		14.086	4.8742	1	17598			35059	33127	28866	28893	38500	38500					0.1858525246420868
LRWLWVCHRWL	11	Unmodified	_LRWLWVCHRWL_					0	0	0		L1PB1_dup435|chr1:148902763-148905178:-|1.8547645190966555|0.2878265206874703|2.69|429.0|100|1|anti-sense	L1PB1_dup435|chr1:148902763-148905178:-|1.8547645190966555|0.2878265206874703|2.69|429.0|100|1|anti-sense	L1PB1_dup435|chr1:148902763-148905178:-|1.8547645190966555|0.2878265206874703|2.69|429.0|100|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.8189697265625	3	523.287086	1566.83943	0.66136	0.00034608	3.8641	0.002022	4.5255	0.0023681	523.2901453081297	81.646	1.1755	79.997	79.315	80.491	-1.6485					44	22	3	0	0	0	0.026497	1	6966	6966		9.6461	1.2389	1	65251			35060	14772	28867	28894	38501	38501					0.07868166381194897
LRWRDFLKNYK	11	Unmodified	_LRWRDFLKNYK_					0	0	0			REV__nc|ENSG00000134343|Q9BYT9-2|ANO3	REV__nc|ENSG00000134343|Q9BYT9-2|ANO3	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.6241455078125	3	513.624532	1537.85177	-1.1138	-0.00057205	-2.7158	-0.0013949	-3.8295	-0.0019669	513.623106211836	66.174	1.9145	62.684	62.418	64.333	-3.4902					128	38	5	0	0	0	0.72464	1	4828	4828		20.315	3.1483	1	5280900	+		35061	19198	28868	28895	38502	38502					0.10435481325203
LRWRRHQQERL	11	Unmodified	_LRWRRHQQERL_					0	0	0			REV__MTHFD1L|p.L914Gfs*14|1|0.81|ENSG00000120254|chr6:151037009-151037042|TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA/-|frameshift_variant	REV__MTHFD1L|p.L914Gfs*14|1|0.81|ENSG00000120254|chr6:151037009-151037042|TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	526.6343383789062	3	526.634313	1576.88111	0.89518	0.00047143	0.35205	0.0001854	1.2472	0.00065683	526.6344674636681	62.939	1.7933	59.905	59.561	61.354	-3.0339					97	35	4	0	0	0	0.72555	1	2319	2319		8.4073	1.7476	1	164120	+		35062	18490	28869	28896	38503	38503					0.11574438394040953
LRWTLNLQKWK	11	Unmodified	_LRWTLNLQKWK_					0	0	0			REV__ENST00000473310.5_1_1:207242783-207244892:+|nuORF	REV__ENST00000473310.5_1_1:207242783-207244892:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	495.9594421386719	3	495.961144	1484.8616	-4.8163	-0.0023887	-0.19968	-9.9032E-05	-5.016	-0.0024877	495.96094978154576	162.14	1.4092	161.91	160.94	162.35	-0.22696					77	27	3	0	0	0	0.72573	1	16506	16506		6.001	0.58812	1	83644	+		35063	26328	28870	28897	38504	38504					0.13856669330562
LRYLMEEV	8	Unmodified	_LRYLMEEV_					0	0	0			REV__NCAPG2|p.E356Kfs*40|1|0.05|ENSG00000146918|chr7:158680040-158680041|-/CTAAAATAAAATAAAATAAAATAAAATTT|frameshift_variant	REV__NCAPG2|p.E356Kfs*40|1|0.05|ENSG00000146918|chr7:158680040-158680041|-/CTAAAATAAAATAAAATAAAATAAAATTT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.7951049804688	2	526.775885	1051.53722	-0.5099	-0.0002686	2.6543	0.0013982	2.1444	0.0011296	526.7760635747555	65.305	0.19582	65.305	65.19	65.385	0					6	4	2	0	0	0	0.028476	1	5998	5998		18.324	0	1	109530	+		35064	20034	28871	28898	38505	38505					0.013509808512935706
LRYLMEEV	8	Unmodified	_LRYLMEEV_					0	0	0			REV__NCAPG2|p.E356Kfs*40|1|0.05|ENSG00000146918|chr7:158680040-158680041|-/CTAAAATAAAATAAAATAAAATAAAATTT|frameshift_variant	REV__NCAPG2|p.E356Kfs*40|1|0.05|ENSG00000146918|chr7:158680040-158680041|-/CTAAAATAAAATAAAATAAAATAAAATTT|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	526.775885	1051.53722	-0.57562	-0.00030322	-0.22195	-0.00011692	-0.79757	-0.00042014	526.7760042230511	68.768	0.68884	65.278	64.965	65.654	-3.4902	-0.013464	-0.00040318	NaN	25.45	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30926	+		35065	20034	28871	28898							0.013509808512935706
LRYPMAVGL	9	Unmodified	_LRYPMAVGL_					0	0	0		ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	ENSG00000130255|ENST00000347512|RPL36	MULTI-MSMS	OvCa99_classI_Rep5	1	510.2902526855469	2	510.288963	1018.56337	-0.49799	-0.00025412	0.16668	8.5053E-05	-0.33131	-0.00016906	510.28858298193336	104.65	0.81636	104.65	104.41	105.22	0					50	18	4	0	0	0	0.048552	1	11729	11729		119.56	14.81	1	2272600			35066	3974	28872	28899	38506	38506					0.05483294813438988
LRYPVATQ	8	Unmodified	_LRYPVATQ_					0	0	0		ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A;MAP1A|p.K905Tfs*9|1|0.22|ENSG00000166963|chr15:43524186-43524187|-/C|frameshift_variant;MAP1A|p.A1115Lfs*16|1|0.07|ENSG00000166963|chr15:43524814-43524815|-/GCTTCTCCTCCACCATCTGGCCC|frameshift_variant;MAP1A|p.G1106Wfs*31|1|0.04|ENSG00000166963|chr15:43524788-43524789|-/T|frameshift_variant	ENSG00000166963|ENST00000300231|MAP1A	ENSG00000166963|ENST00000300231|MAP1A	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.2704772949219	2	474.269084	946.523616	-0.26782	-0.00012702	1.8022	0.00085472	1.5344	0.00072771	474.27041733429513	40.911	2.4856	37.957	37.368	39.854	-2.9541					106	47	5	0	0	0	0.62934	1	1799	1799		57.811	0	1	443440			35067	6741	28873	28900	38507	38507					0.048214911343848144
LRYQGVPVE	9	Unmodified	_LRYQGVPVE_					0	0	0		ENSG00000103042|ENST00000219320|SLC38A7	ENSG00000103042|ENST00000219320|SLC38A7	ENSG00000103042|ENST00000219320|SLC38A7	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.302978515625	2	530.792924	1059.57129	2.5647	0.0013613	-0.46721	-0.00024799	2.0975	0.0011133	530.792615138408	115.75	1.0655	115.75	115.39	116.46	0					35	22	2	0	0	0	0.02741	1	13193	13193		60.972	13.056	1	472110			35068	2275	28874	28901	38508	38508					0.043891453345850096
LRYQKKFT	8	Unmodified	_LRYQKKFT_					0	0	0		ENSG00000121440|ENST00000263666|PDZRN3;nc|ENSG00000121440|Q9UPQ7-3|PDZRN3;nc|ENSG00000121440|Q9UPQ7-2|PDZRN3	ENSG00000121440|ENST00000263666|PDZRN3	ENSG00000121440|ENST00000263666|PDZRN3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.784423828125	2	542.319109	1082.62366	-1.0993	-0.0005962	-2.6734	-0.0014498	-3.7727	-0.002046	542.3175841068899	52.525	1.0009	49.317	48.994	49.995	-3.208					37	19	3	0	0	0	0.028476	1	3208	3208		17.365	0	1	99625			35069	3484	28875	28902	38509	38509					0.08565728468170164
LRYRDPGVL	9	Unmodified	_LRYRDPGVL_					0	0	0		ENSG00000167608|ENST00000619895|TMC4;nc|ENSG00000167608|Q7Z404-1|TMC4;nc|ENSG00000167608|Q7Z404|TMC4	ENSG00000167608|ENST00000619895|TMC4	ENSG00000167608|ENST00000619895|TMC4	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.27294921875	2	544.81419	1087.61383	1.9862	0.0010821	0.47275	0.00025756	2.4589	0.0013397	544.814102613851	85.678	0.94923	85.678	85.004	85.954	0					53	22	4	0	0	0	0.027417	1	8904	8904		55.504	11.387	1	1040000			35070	6812	28876	28903	38510	38510					0.07352540462807156
LRYREDLDF	9	Unmodified	_LRYREDLDF_					0	0	0		nc|ENSG00000103222|P33527-8|ABCC1;nc|ENSG00000103222|P33527-6|ABCC1;nc|ENSG00000103222|P33527-7|ABCC1;nc|ENSG00000103222|P33527-5|ABCC1;nc|ENSG00000103222|P33527-4|ABCC1;nc|ENSG00000103222|P33527-2|ABCC1;nc|ENSG00000103222|P33527-3|ABCC1;ENSG00000103222|ENST00000399410|ABCC1;nc|ENSG00000103222|P33527-9|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	nc|ENSG00000103222|P33527-8|ABCC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	614.3880004882812	2	613.811845	1225.60914	0.46766	0.00028706	1.4296	0.00087752	1.8973	0.0011646	614.3151719959396	162.36	0.5045	162.36	161.97	162.48	0					13	9	2	0	0	0	0.027462	1	19035	19035		34.173	0	1	23527			35071	2295	28877	28904	38511	38511					0.005356115293579933
LRYRENPRIAV	11	Unmodified	_LRYRENPRIAV_					0	0	0			REV__nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27	REV__nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27	MULTI-MSMS	OvCa9_classI_Rep2	2	462.93682861328125	3	462.936999	1385.78917	0.079191	3.666E-05	-0.90827	-0.00042047	-0.82908	-0.00038381	462.9367014144655	44.408	4.3763	41.698	41.303	45.679	-2.7097					263	87	6	0	0	0	0.71831	1	2676	2676		23.378	0	1	4456400	+		35072	20608	28878	28905	38512	38512					0.1117033525702027
LRYVQLKI	8	Unmodified	_LRYVQLKI_					0	0	0			REV__ENST00000514473.2_1_14:22951844-22951934:-|nuORF	REV__ENST00000514473.2_1_14:22951844-22951934:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.3175659179688	2	516.831852	1031.64915	1.3295	0.00068715	0.28738	0.00014853	1.6169	0.00083568	516.8317566969331	102.78	2.7493	102.78	102.08	104.83	0					121	64	3	0	0	0	0.028476	1	11441	11441		60.294	0	1	1300500	+		35073	26985	28879	28906	38513	38513					0.1345920299061163
LRYYYNKRILH	11	Unmodified	_LRYYYNKRILH_					0	0	0		ENSG00000117036|ENST00000368192|ETV3;nc|ENSG00000117036|P41162-2|ETV3;ENSG00000268041|ENST00000597630|ERFL;ENSG00000253831|ENST00000454449|ETV3L;nc|ENSG00000105722|P50548-2|ERF;ENSG00000105722|ENST00000222329|ERF	ENSG00000117036|ENST00000368192|ETV3	ENSG00000117036|ENST00000368192|ETV3	MULTI-MSMS	OvCa99_classI_Rep5	1	513.62353515625	3	513.624532	1537.85177	-1.3626	-0.00069988	-3.6749	-0.0018875	-5.0375	-0.0025874	513.6228806582204	64.131	0.64995	64.131	63.894	64.544	0					49	15	5	0	0	0	0.72477	1	5827	5827		18.531	2.0012	1	3168300			35074	3232	28880	28907	38514	38514					0.10435481325225737
LSAARDPTL	9	Unmodified	_LSAARDPTL_					0	0	0		nc|ENSG00000064787|O75363-2|BCAS1;nc|ENSG00000064787|O75363|BCAS1;ENSG00000064787|ENST00000688948|BCAS1	nc|ENSG00000064787|O75363-2|BCAS1	nc|ENSG00000064787|O75363-2|BCAS1	MULTI-SECPEP	OvCa9_classI_Rep2	2	471.78997802734375	2	472.263999	942.513445	-1.2078	-0.00057042	0.71719	0.00033871	-0.49064	-0.00023171	472.26436883980983	50.414	0.64437	47.62	47.281	47.926	-2.794					14	12	2	0	0	0	0.027462	1	3252	3252		37.159	1.5408	1	9549.9			35075	14883	28881	28908	38515	38515					0.03988883409135724
LSAATILQI	9	Unmodified	_LSAATILQI_					0	0	0			REV__nc|ENSG00000183207|Q9Y230-2|RUVBL2	REV__nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.28729248046875	2	465.286943	928.559333	1.4861	0.00069147	-4.2923	-0.0019971	-2.8062	-0.0013057	465.28490580371215	138.56	1.1696	137.03	136.79	137.96	-1.5284					44	23	3	0	0	0	0.44568	1	13511	13511		47.657	0	1	68502	+		35076	22348	28882	28909	38516	38516					0.09219528591370363
LSAATILQI	9	Unmodified	_LSAATILQI_					0	0	0			REV__nc|ENSG00000183207|Q9Y230-2|RUVBL2	REV__nc|ENSG00000183207|Q9Y230-2|RUVBL2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	465.286943	928.559333	-0.63183	-0.00029398	-2.2513	-0.0010475	-2.8831	-0.0013415	465.28587245151994	137.26	0.55573	137.04	136.84	137.39	-0.22696	0.0041007	0.0017118	NaN	47.657	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12729	+		35077	22348	28882	28909							0.09219528591370363
LSAAWDCLH	9	Unmodified	_LSAAWDCLH_					0	0	0			REV__ENST00000299237.2_1_16:58031894-58032311:-|nuORF	REV__ENST00000299237.2_1_16:58031894-58032311:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.29437255859375	2	508.236927	1014.4593	-1.3439	-0.00068304	4.2518	0.0021609	2.9079	0.0014779	508.23702371627866	44.315	0.30716	41.281	41.111	41.418	-3.0338					6	5	2	0	0	0	0.027462	1	2171	2171		45.952	8.9235	1	8038.6	+		35078	24219	28883	28910	38517	38517					-0.04735032014082208
LSADMNTEAI	10	Unmodified	_LSADMNTEAI_					0	0	0		tr|A0A553SPQ5|A0A553SPQ5_NIACIasparaginaseOS=NialliacirculansOX=1397GN=CEQ21_26670PE=3SV=1	tr|A0A553SPQ5|A0A553SPQ5_NIACIasparaginaseOS=NialliacirculansOX=1397GN=CEQ21_26670PE=3SV=1	tr|A0A553SPQ5|A0A553SPQ5_NIACIasparaginaseOS=NialliacirculansOX=1397GN=CEQ21_26670PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.8045654296875	2	532.750064	1063.48558	-0.35577	-0.00018954	4.0219	0.0021427	3.6662	0.0019532	532.7523925113362	54.202	0.70634	54.202	53.969	54.675	0					19	16	2	0	0	0	0.027325	1	4402	4402		68.846	0	1	632520			35079	34070	28884	28911	38518	38518					-0.0436280763326522
LSADRYKAV	9	Unmodified	_LSADRYKAV_					0	0	0		ENSG00000102239|ENST00000370648|BRS3;BRS3|p.S234Pfs*2|1|0.18|ENSG00000102239|chrX:136490394-136490406|TATCTCTGTCTAC/-|frameshift_variant	ENSG00000102239|ENST00000370648|BRS3	ENSG00000102239|ENST00000370648|BRS3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.254638671875	2	511.785099	1021.55564	0.042262	2.1629E-05	-1.1711	-0.00059936	-1.1289	-0.00057773	511.78474481901145	86.972	1.0511	84.345	84.054	85.105	-2.6269					56	20	4	0	0	0	0.027461	1	7458	7458		40.778	13.731	1	282930			35080	2231	28885	28912	38519	38519					0.045728588175165896
LSAEVKNKI	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LSAEVKNKI_					1	0	0		nc|ENSG00000117519|Q15417-3|CNN3;ENSG00000117519|ENST00000370206|CNN3;CNN3|p.S22C|1|0.62|ENSG00000117519|chr1:94903517-94903517|G/C|missense_variant	nc|ENSG00000117519|Q15417-3|CNN3	nc|ENSG00000117519|Q15417-3|CNN3	MULTI-MSMS	OvCa9_classI_Rep2	2	522.3082275390625	2	522.308406	1042.60226	-0.81099	-0.00042359	-0.55121	-0.0002879	-1.3622	-0.00071149	522.3082136275447	53.391	1.7906	50.578	50.231	52.022	-2.8139					73	35	5	0	0	0	0.13482	1	3610	3610		87.754	8.0417	1	356130			35081	3260	28886	28913	38520	38520					0.08266298648823067
LSAFYVKARA	10	Unmodified	_LSAFYVKARA_					0	0	0			REV__ENSG00000196576|ENST00000359337|PLXNB2;REV__TUBGCP6-PLXNB2|1|fusion	REV__ENSG00000196576|ENST00000359337|PLXNB2	MULTI-MSMS	OvCa9_classI_Rep3	3	563.3179321289062	2	563.324391	1124.63423	-6.0709	-0.0034199	-3.7207	-0.0020959	-9.7915	-0.0055158	563.322073230946	155.76	0.93549	154.68	154.4	155.34	-1.073					61	26	3	0	0	0	0.73378	1	13411	13411		26.693	1.1189	1	103840	+		35082	22843;32739	28887	28914	38521	38521					0.07689711122611698
LSAGDKLTEF	10	Unmodified	_LSAGDKLTEF_					0	0	0		ENSG00000128242|ENST00000406361|GAL3ST1	ENSG00000128242|ENST00000406361|GAL3ST1	ENSG00000128242|ENST00000406361|GAL3ST1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.7830810546875	2	540.782222	1079.54989	-1.9395	-0.0010488	1.1155	0.00060325	-0.82396	-0.00044558	540.7826984010426	72.434	1.5046	69.038	68.716	70.22	-3.3961					79	30	3	0	0	0	0.13777	1	5564	5564		104.06	0.043199	1	1150000			35083	3867	28888	28915	38522	38522					0.013297155152031337
LSAGRLNPSSP	11	Unmodified	_LSAGRLNPSSP_					0	0	0		ENST00000585494.5_1_18:55217915-55217999:-|nuORF	ENST00000585494.5_1_18:55217915-55217999:-|nuORF	ENST00000585494.5_1_18:55217915-55217999:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.3272094726562	2	549.798737	1097.58292	-0.9159	-0.00050356	-2.0646	-0.0011351	-2.9805	-0.0016387	550.2992792894058	87.378	1.4961	84.751	83.957	85.453	-2.6269					66	29	4	0	0	0	0.025248	1	7350	7350		28.577	0.49524	1	149550			35084	14035	28889	28916	38523	38523					0.03803342357878137
LSAGVFAFII	10	Unmodified	_LSAGVFAFII_					0	0	0		tr|A0A7D6VSC1|A0A7D6VSC1_9CLOTADP-ribosylglycohydrolasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04255PE=4SV=1	tr|A0A7D6VSC1|A0A7D6VSC1_9CLOTADP-ribosylglycohydrolasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04255PE=4SV=1	tr|A0A7D6VSC1|A0A7D6VSC1_9CLOTADP-ribosylglycohydrolasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04255PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.319580078125	2	519.305136	1036.59572	-0.55513	-0.00028828	1.4764	0.00076672	0.92131	0.00047844	519.3064838318168	94.503	0.64911	92.035	91.811	92.46	-2.4685					16	12	2	0	0	0	0.027117	1	8282	8282		30.504	11.144	1	18703			35085	35012	28890	28917	38524	38524					0.07888405488097305
LSAGVTGIGGL	11	Unmodified	_LSAGVTGIGGL_					0	0	0		nc|ENSG00000205592|Q7Z5P9-2|MUC19;ENSG00000205592|ENST00000454784|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	nc|ENSG00000205592|Q7Z5P9-2|MUC19	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.8092346191406	2	472.7742	943.533846	1.988	0.00093988	-2.4678	-0.0011667	-0.47979	-0.00022683	472.7727938285069	67.799	1.4692	64.308	64.037	65.507	-3.4902					36	29	2	0	0	0	0.025444	1	5068	5068		40.778	6.6056	1	204090			35086	9076	28891	28918	38525	38525					0.05982054068965681
LSAHYIPKE	9	Unmodified	_LSAHYIPKE_					0	0	0		ENSG00000175175|ENST00000308249|PPM1E;PPM1E|p.K247Nfs*7|1|0.33|ENSG00000175175|chr17:58965850-58965851|-/T|frameshift_variant;PPM1E|p.L222Kfs*50|1|0.05|ENSG00000175175|chr17:58965773-58965774|-/AAATACAATCTCTTCAGTATCATTCAGTGTTG|frameshift_variant	ENSG00000175175|ENST00000308249|PPM1E	ENSG00000175175|ENST00000308249|PPM1E	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.3333740234375	2	529.287474	1056.5604	-1.2003	-0.00063533	-1.6255	-0.00086035	-2.8258	-0.0014957	529.2863204140413	57.661	1.342	54.869	53.981	55.323	-2.792					45	26	3	0	0	0	0.027461	1	4097	4097		49.442	14.29	1	40315			35087	7522	28892	28919	38526	38526					0.034377429602727716
LSAIQDLGF	9	Unmodified	_LSAIQDLGF_					0	0	0			REV__tr|A0A7D6ZQZ4|A0A7D6ZQZ4_9CLOTRibulose-phosphate3-epimeraseOS=ClostridiumintestinaleOX=36845GN=rpePE=3SV=1	REV__tr|A0A7D6ZQZ4|A0A7D6ZQZ4_9CLOTRibulose-phosphate3-epimeraseOS=ClostridiumintestinaleOX=36845GN=rpePE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	482.7450866699219	2	482.260925	962.507297	-0.95899	-0.00046248	3.4271	0.0016527	2.4681	0.0011903	482.261335209081	51.053	0.25146	47.88	47.771	48.022	-3.1734					6	4	2	0	0	0	0.027462	1	2987	2987		30.504	0	1	8392.4	+		35088	32150	28893	28920	38527	38527					0.02454365177618456
LSAKERLK	8	Unmodified	_LSAKERLK_					0	0	0		ENSG00000104218|ENST00000678616|CSPP1;nc|ENSG00000104218|Q1MSJ5|CSPP1	ENSG00000104218|ENST00000678616|CSPP1	ENSG00000104218|ENST00000678616|CSPP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.7796936035156	2	472.798009	943.581465	-1.0436	-0.00049339	-1.613	-0.00076263	-2.6566	-0.001256	472.79834141507104	34.639	0.23369	34.639	34.491	34.725	0					6	4	2	0	0	0	0.028476	1	1679	1679		79.451	2.6769	1	49718			35089	2359	28894	28921	38528	38528					0.1074175305980134
LSAKISFLH	9	Unmodified	_LSAKISFLH_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.3353271484375	2	508.300384	1014.58622	-1.3442	-0.00068325	-2.6571	-0.0013506	-4.0013	-0.0020338	508.2989257387202	43.954	0.55158	40.947	40.536	41.088	-3.0074					22	10	4	0	0	0	0.027459	1	2158	2158		44.377	17.581	1	267850			35090	9475	28895	28922	38529	38529					0.07950637202554844
LSAKKRKKS	9	Unmodified	_LSAKKRKKS_					0	0	0		ENST00000475957.1_1_9:20363472-20620706:-|nuORF;nc|ENSG00000171843|P42568-2|MLLT3;ENSG00000171843|ENST00000380338|MLLT3	ENST00000475957.1_1_9:20363472-20620706:-|nuORF	ENST00000475957.1_1_9:20363472-20620706:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.2805786132812	2	523.345658	1044.67676	-0.66063	-0.00034574	0.55526	0.00029059	-0.10537	-5.5146E-05	523.3461840937779	76.465	0.41906	73.527	73.365	73.785	-2.9389					14	8	2	0	0	0	0.027462	1	6067	6067		17.365	4.4058	1	42586			35091	7238	28896	28923	38530	38530					0.15621106250841876
LSAKLVFKGM	10	Unmodified	_LSAKLVFKGM_					0	0	0			REV__nc|ENSG00000136826|O43474-4|KLF4	REV__nc|ENSG00000136826|O43474-4|KLF4	MSMS	OvCa99_classI_Rep5	1	547.3246459960938	2	547.325545	1092.63654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.89	1	128.89	128.39	129.39	0								0	0	0	0.14861	1	14940	14940		39.253	2.0937	1		+		35092	19407	28897	28924	38531	38531					0.09392423536064598
LSALARRPK	9	Unmodified	_LSALARRPK_					0	0	0		chr19:10256825-10259617|270|36.92|0.28|7.05|+|1|MRPL4,MRPL4|1	chr19:10256825-10259617|270|36.92|0.28|7.05|+|1|MRPL4,MRPL4|1	chr19:10256825-10259617|270|36.92|0.28|7.05|+|1|MRPL4,MRPL4|1	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.8116455078125	2	506.324725	1010.6349	-0.92951	-0.00047064	1.7061	0.00086385	0.7766	0.00039321	506.3250542539287	89.05	1.5899	86.919	86.364	87.954	-2.1309					64	31	3	0	0	0	0.027441	1	5470	5470		37.159	14.117	1	92096			35093	399	28898	28925	38532	38532					0.13000550562321678
LSALGSLILM	10	Oxidation (M)	_LSALGSLILM(Oxidation (M))_		LSALGSLILM(1)		LSALGSLILM(93)	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6;ENST00000553022.1_1_12:50146843-50152319:+|nuORF	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	OvCa99_classI_Rep5	1	517.3007202148438	2	517.301736	1032.58892	1.1022	0.00057019	-2.5042	-0.0012954	-1.402	-0.00072523	517.3002267274945	119.72	0.75906	119.72	119.43	120.18	0					42	18	3	0	0	0	0.20801	1	13755	13755		93.195	18.152	1	1422200			35094	4793	28899	28926	38533	38533		155			0.07392724545229612
LSALGSVILA	10	Unmodified	_LSALGSVILA_					0	0	0		ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	ENSG00000066735|ENST00000423312|KIF26A	MULTI-SECPEP	OvCa9_classI_Rep3	3	472.27728271484375	2	472.294768	942.574983	-0.49525	-0.0002339	0.45309	0.00021399	-0.042165	-1.9914E-05	472.2948259595053	85.181	1.1864	82.961	82.598	83.785	-2.2204					54	23	3	0	0	0	0.028155	1	5052	5052		104.75	11.551	1	284560			35095	1358	28900	28927	38534	38534					0.1013981510842541
LSALKASH	8	Unmodified	_LSALKASH_					0	0	0		ENST00000435580.1_1_1:160033303-160034783:+|nuORF	ENST00000435580.1_1_1:160033303-160034783:+|nuORF	ENST00000435580.1_1_1:160033303-160034783:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	413.7438659667969	2	413.742702	825.470852	3.8201	0.0015805	-1.2593	-0.00052101	2.5608	0.0010595	413.7420745510878	102.42	0.89114	102.42	102.12	103.01	0					44	20	3	0	0	0	0.53531	1	11420	11420		73.975	5.1879	1	837750			35096	11863	28901	28928	38535	38535					0.05113533071562415
LSALQKAQV	9	Unmodified	_LSALQKAQV_					0	0	0		ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2747497558594	2	479.290017	956.565481	2.0153	0.0009659	0.69447	0.00033285	2.7097	0.0012988	479.2902632663316	78.079	0.57816	78.079	77.757	78.335	0					27	13	3	0	0	0	0.027232	1	7897	7897		56.721	0	1	668440			35097	5679	28902	28929	38536	38536					0.0854604682289164
LSALTTPPPQ	10	Unmodified	_LSALTTPPPQ_					0	0	0		nc|ENSG00000183248|Q9H6K5-2|PRR36;ENSG00000183248|ENST00000618550|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	MULTI-MSMS	OvCa9_classI_Rep3	3	512.7865600585938	2	512.787307	1023.56006	0.11256	5.7719E-05	-0.83263	-0.00042696	-0.72007	-0.00036924	512.786824757787	108.89	2.0869	107.69	107.36	109.45	-1.1978					84	39	3	0	0	0	0.5675	1	7808	7808		45.972	0.020292	1	319940			35098	8059	28903	28930	38537	38537					0.04922323240418791
LSANNEPSTA	10	Unmodified	_LSANNEPSTA_					0	0	0			REV__LIG1|p.T614Ifs*112|1|0.04|ENSG00000105486|chr19:48128003-48128004|-/GGAGGCGGAGGTTGCAGTGAGCTGAGATC|frameshift_variant	REV__LIG1|p.T614Ifs*112|1|0.04|ENSG00000105486|chr19:48128003-48128004|-/GGAGGCGGAGGTTGCAGTGAGCTGAGATC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	502.23748779296875	2	502.238178	1002.4618	-0.89962	-0.00045182	0.54755	0.000275	-0.35208	-0.00017683	502.238318170929	46.08	1.4407	43.37	43.048	44.489	-2.7097					59	28	5	0	0	0	0.40664	1	2737	2737		67.494	4.1874	1	328560	+		35099	17729	28904	28931	38538	38538					-0.039329050754190575
LSAPLDPTAVG	11	Unmodified	_LSAPLDPTAVG_					0	0	0			REV__ENST00000456324.5_1_19:36705694-36705913:+|nuORF	REV__ENST00000456324.5_1_19:36705694-36705913:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.8295288085938	2	520.784764	1039.55498	0.70038	0.00036475	-0.8576	-0.00044662	-0.15721	-8.1873E-05	521.2858767333162	145.01	0.58311	145.01	144.64	145.23	0					12	11	2	0	0	0	0.025909	1	16972	16972		26.693	1.1189	1	18961	+		35100	26027	28905	28932	38539	38539					0.036780193777985914
LSAPRGLL	8	Unmodified	_LSAPRGLL_					0	0	0		chr17:34270366-34271146|339|13.37|0.74|4.17|+|0|CCL7,CCL7|1	chr17:34270366-34271146|339|13.37|0.74|4.17|+|0|CCL7,CCL7|1	chr17:34270366-34271146|339|13.37|0.74|4.17|+|0|CCL7,CCL7|1	MULTI-MSMS	OvCa9_classI_Rep3	3	413.7618713378906	2	413.760895	825.507237	0.12259	5.0723E-05	-0.31707	-0.00013119	-0.19448	-8.0468E-05	413.7606219208656	95.584	1.6592	93.755	93.481	95.14	-1.8286					70	32	4	0	0	0	0.45246	1	6240	6240		82.305	8.3303	1	647280			35101	383	28906	28933	38540	38540					0.0875040996829739
LSAPSPVWSV	10	Unmodified	_LSAPSPVWSV_					0	0	0			REV__ENST00000334512.9_1_10:81074688-81075099:+|nuORF	REV__ENST00000334512.9_1_10:81074688-81075099:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.3321533203125	2	521.782025	1041.5495	-0.30305	-0.00015813	-2.9345	-0.0015312	-3.2376	-0.0016893	521.7802265346112	62.427	0.28761	62.427	62.253	62.541	0					17	6	3	0	0	0	0.026915	1	5545	5545		35.618	5.3006	1	240520	+		35102	24567	28907	28934	38541	38541					0.030383405859993218
LSAPVARL	8	Unmodified	_LSAPVARL_					0	0	0			REV__ENSG00000160113|ENST00000291442|NR2F6	REV__ENSG00000160113|ENST00000291442|NR2F6	MULTI-MSMS	OvCa9_classI_Rep4_	4	413.7615661621094	2	413.760895	825.507237	0.3328	0.0001377	-0.45608	-0.00018871	-0.12328	-5.1009E-05	413.76058110559427	96.211	1.5603	93.786	93.457	95.018	-2.4256					67	30	4	0	0	0	0.57878	1	8495	8495		68.485	0	1	612870	+		35103	20639	28908	28935	38542	38542					0.08750409968274653
LSAQDQRL	8	Unmodified	_LSAQDQRL_					0	0	0			REV__ENSG00000152104|ENST00000366956|PTPN14	REV__ENSG00000152104|ENST00000366956|PTPN14	MSMS	OvCa9_classI_Rep4_	4	465.7538757324219	2	465.753798	929.493044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.457	1	50.249	49.749	50.749	-3.208								0	0	0	0.30129	1	3260	3260		94.006	11.701	1		+		35104	20270	28909	28936	38543	38543					0.025477127493331864
LSAQDQRL	8	Unmodified	_LSAQDQRL_					0	0	0			REV__ENSG00000152104|ENST00000366956|PTPN14	REV__ENSG00000152104|ENST00000366956|PTPN14	MSMS	OvCa9_classI_Rep4_	4	465.7533264160156	2	465.753798	929.493044	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.566	1	50.358	49.858	50.858	-3.208								0	0	0	0.30129	1	3273	3273		82.305	0	1		+		35105	20270	28909	28936	38544	38544					0.025477127493331864
LSAQLSPKP	9	Unmodified	_LSAQLSPKP_					0	0	0		ENST00000233813.4_1_2:217538988-217539135:-|nuORF	ENST00000233813.4_1_2:217538988-217539135:-|nuORF	ENST00000233813.4_1_2:217538988-217539135:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	470.3026123046875	2	470.776742	939.538931	1.5319	0.00072118	-2.6592	-0.0012519	-1.1273	-0.0005307	470.775639400611	111.2	0.44565	110.09	109.9	110.35	-1.1038					14	8	2	0	0	0	0.027453	1	8064	8064		45.972	16.131	1	15478			35106	9733	28910	28937	38545	38545					0.06674357931581198
LSARFAEI	8	Unmodified	_LSARFAEI_					0	0	0			REV__PGK1|p.D229Tfs*6|1|0.05|ENSG00000102144|chrX:78122877-78122877|G/-|frameshift_variant	REV__PGK1|p.D229Tfs*6|1|0.05|ENSG00000102144|chrX:78122877-78122877|G/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	453.7402038574219	2	453.75581	905.497067	2.4778	0.0011243	-1.0625	-0.00048214	1.4153	0.00064218	453.755206512015	84.949	0.41422	84.949	84.672	85.087	0					18	9	2	0	0	0	0.028476	1	8885	8885		45.952	12.436	1	290430	+		35107	17538	28911	28938	38546	38546					0.04053802243049631
LSARKPDLI	9	Unmodified	_LSARKPDLI_					0	0	0		tr|A0A7D6ZFG3|A0A7D6ZFG3_9CLOTTranscriptionalregulatoryproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17795PE=4SV=1	tr|A0A7D6ZFG3|A0A7D6ZFG3_9CLOTTranscriptionalregulatoryproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17795PE=4SV=1	tr|A0A7D6ZFG3|A0A7D6ZFG3_9CLOTTranscriptionalregulatoryproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17795PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	506.8119812011719	2	506.811116	1011.60768	-0.96963	-0.00049142	-0.36531	-0.00018514	-1.3349	-0.00067656	506.8110395873254	89.248	2.4224	87.118	86.702	89.124	-2.1309					173	47	5	0	0	0	0.22961	1	5518	5518		71.296	0	1	9108500			35108	35508	28912	28939	38547	38547					0.10234022231293238
LSARKPDLIL	10	Unmodified	_LSARKPDLIL_					0	0	0		tr|A0A7D6ZFG3|A0A7D6ZFG3_9CLOTTranscriptionalregulatoryproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17795PE=4SV=1	tr|A0A7D6ZFG3|A0A7D6ZFG3_9CLOTTranscriptionalregulatoryproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17795PE=4SV=1	tr|A0A7D6ZFG3|A0A7D6ZFG3_9CLOTTranscriptionalregulatoryproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17795PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	563.3527221679688	2	563.353148	1124.69174	-1.0854	-0.00061147	0.27756	0.00015637	-0.80785	-0.00045511	563.3535121729102	117.2	1.8826	116.17	115.84	117.73	-1.0324					63	37	2	0	0	0	0.53885	1	8800	8800		49.442	5.0644	1	2467900			35109	35508	28913	28940	38548	38548					0.1343855332820567
LSARLHLW	8	Unmodified	_LSARLHLW_					0	0	0		FHOD3|p.D1177Afs*10|1|0.13|ENSG00000134775|chr18:36747008-36747009|-/C|frameshift_variant;nc|ENSG00000134775|Q2V2M9-2|FHOD3;nc|ENSG00000134775|Q2V2M9|FHOD3;nc|ENSG00000134775|Q2V2M9-3|FHOD3;ENSG00000134775|ENST00000590592|FHOD3	FHOD3|p.D1177Afs*10|1|0.13|ENSG00000134775|chr18:36747008-36747009|-/C|frameshift_variant	FHOD3|p.D1177Afs*10|1|0.13|ENSG00000134775|chr18:36747008-36747009|-/C|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.3167419433594	2	498.292894	994.571235	1.7515	0.00087275	0.1368	6.8168E-05	1.8883	0.00094092	498.2922391474104	110.93	0.43987	110.93	110.76	111.2	0					12	9	2	0	0	0	0.028476	1	12581	12581		71.296	25.344	1	124890			35110	4327	28914	28941	38549	38549					0.07373190125224482
LSARPLATA	9	Unmodified	_LSARPLATA_					0	0	0		ENST00000456581.1_2_10:131902486-131909070:-|nuORF	ENST00000456581.1_2_10:131902486-131909070:-|nuORF	ENST00000456581.1_2_10:131902486-131909070:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	450.269287109375	2	450.269084	898.523616	1.3254	0.0005968	-1.7002	-0.00076554	-0.37475	-0.00016874	450.2680012991639	61.146	3.3168	58.387	57.67	60.987	-2.7593					139	63	5	0	0	0	0.37135	1	4527	4527		54.776	1.8396	1	6706400			35111	12112	28915	28942	38550	38550					0.07029491134369437
LSASCLCLMS	10	Unmodified	_LSASCLCLMS_					0	0	0			REV__ENST00000487017.5_1_3:48602344-48602914:-|nuORF	REV__ENST00000487017.5_1_3:48602344-48602914:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.7841186523438	2	514.234681	1026.45481	0.14495	7.4539E-05	3.8798	0.0019951	4.0247	0.0020697	514.2362738530386	112.84	0.93903	111.4	111.16	112.1	-1.4461					22	18	2	0	0	0	0.026849	1	10445	10445		40.778	15.328	1	28459	+		35112	26596	28916	28943	38551	38551					-0.057360005435384664
LSASCLCLMS	10	Unmodified	_LSASCLCLMS_					0	0	0			REV__ENST00000487017.5_1_3:48602344-48602914:-|nuORF	REV__ENST00000487017.5_1_3:48602344-48602914:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	514.234681	1026.45481	2.1954	0.001129	1.5902	0.00081775	3.7857	0.0019467	514.2352216416725	112.47	0.44318	111.39	111.17	111.61	-1.0753	-0.040902	-0.0013727	NaN	40.778	13	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19233	+		35113	26596	28916	28943							-0.057360005435384664
LSASIPENIS	10	Unmodified	_LSASIPENIS_					0	0	0		tr|A0A553SL32|A0A553SL32_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_19885PE=4SV=1	tr|A0A553SL32|A0A553SL32_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_19885PE=4SV=1	tr|A0A553SL32|A0A553SL32_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_19885PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	515.7743530273438	2	515.774396	1029.53424	0.6844	0.000353	-0.88489	-0.0004564	-0.20049	-0.00010341	515.7739065708082	110.02	1.9535	108.87	108.45	110.41	-1.1444					80	37	3	0	0	0	0.26424	1	7951	7951		85.161	5.4482	1	355220			35114	33679	28917	28944	38552	38552					0.020654289981621332
LSASITWPESP	11	Unmodified	_LSASITWPESP_					0	0	0			REV__PKHD1|p.A3983Kfs*44|1|0.16|ENSG00000170927|chr6:51619327-51619360|CAGGTACACCTGCTGAGCAGGAGCACCTGGAGCA/-|frameshift_variant	REV__PKHD1|p.A3983Kfs*44|1|0.16|ENSG00000170927|chr6:51619327-51619360|CAGGTACACCTGCTGAGCAGGAGCACCTGGAGCA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	594.2991333007812	2	594.300778	1186.587	-1.0714	-0.00063671	-2.8884	-0.0017166	-3.9598	-0.0023533	594.299039734462	75.518	2.2821	73.664	72.913	75.195	-1.854					147	43	5	0	0	0	0.16138	2	6221	6215;6221		85.161	7.5496	1	1939700	+		35115	21578	28918	28945	38553;38554	38554					0.001173870609363803
LSASITWPESP	11	Unmodified	_LSASITWPESP_					0	0	0			REV__PKHD1|p.A3983Kfs*44|1|0.16|ENSG00000170927|chr6:51619327-51619360|CAGGTACACCTGCTGAGCAGGAGCACCTGGAGCA/-|frameshift_variant	REV__PKHD1|p.A3983Kfs*44|1|0.16|ENSG00000170927|chr6:51619327-51619360|CAGGTACACCTGCTGAGCAGGAGCACCTGGAGCA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	594.2996826171875	2	594.300778	1186.587	0.16637	9.8874E-05	-4.2523	-0.0025271	-4.0859	-0.0024283	594.2982637247995	76.399	2.3505	73.46	73.033	75.383	-2.9389					154	48	6	0	0	0	0.16138	1	6055	6055		85.161	11.32	1	7818100	+		35116	21578	28918	28945	38555	38555					0.001173870609363803
LSASKLCEEL	10	Unmodified	_LSASKLCEEL_					0	0	0			REV__nc|ENSG00000134765|Q08554-2|DSC1	REV__nc|ENSG00000134765|Q08554-2|DSC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.7808837890625	2	546.783907	1091.55326	-0.13219	-7.228E-05	-3.3658	-0.0018404	-3.498	-0.0019127	546.7820089469107	122.89	3.2778	121.53	121.16	124.44	-1.3666					149	64	4	0	0	0	0.42082	1	11704	11704		65.465	3.358	1	613140	+		35117	19231	28919	28946	38556	38556					0.01114642297534374
LSATMKKL	8	Oxidation (M)	_LSATM(Oxidation (M))KKL_		LSATM(1)KKL		LSATM(100)KKL	0	0	1			REV__ENST00000431693.1_1_3:10070396-10074599:+|nuORF	REV__ENST00000431693.1_1_3:10070396-10074599:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	454.2658386230469	2	454.267696	906.520839	0.67101	0.00030482	-4.3884	-0.0019935	-3.7174	-0.0016887	454.26555939543033	102.96	2.0267	102.27	101.98	104.01	-0.68459					98	40	4	0	0	0	0.32444	1	9495	9495		102.77	6.5829	1	655790	+		35118	25724	28920	28947	38557	38557		581			0.06383899685204142
LSAVFERRR	9	Unmodified	_LSAVFERRR_					0	0	0		tr|A0A7D6ZYA2|A0A7D6ZYA2_9CLOTDUF2975domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01375PE=4SV=1	tr|A0A7D6ZYA2|A0A7D6ZYA2_9CLOTDUF2975domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01375PE=4SV=1	tr|A0A7D6ZYA2|A0A7D6ZYA2_9CLOTDUF2975domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01375PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.329833984375	2	567.330539	1132.64652	-2.3399	-0.0013275	0.99796	0.00056617	-1.3419	-0.00076131	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.63422	1	14727	14727		27.882	4.8398	1	241060			35119	35912	28921	28948	38558	38558					0.0855074758567298
LSAVQAKTPI	10	Unmodified	_LSAVQAKTPI_					0	0	0		nc|ENSG00000156206|Q6P656-2|CFAP161;ENSG00000156206|ENST00000286732|CFAP161	nc|ENSG00000156206|Q6P656-2|CFAP161	nc|ENSG00000156206|Q6P656-2|CFAP161	MULTI-MSMS	OvCa9_classI_Rep2	2	514.3111572265625	2	514.310949	1026.60735	-1.0854	-0.00055823	0.5068	0.00026065	-0.57861	-0.00029758	514.3111587898388	52.512	1.881	49.699	49.345	51.226	-2.8129					64	37	2	0	0	0	0.55359	1	3535	3535		47.657	1.6851	1	592000			35120	5826	28922	28949	38559	38559					0.09510602511431898
LSAVRAGR	8	Unmodified	_LSAVRAGR_					0	0	0		ENST00000302787.2_1_4:1857765-1857864:-|nuORF	ENST00000302787.2_1_4:1857765-1857864:-|nuORF	ENST00000302787.2_1_4:1857765-1857864:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.8980712890625	2	415.253769	828.492984	0.77597	0.00032222	0.11568	4.8034E-05	0.89164	0.00037026	415.25398596817035	32.658	0.34293	32.658	32.453	32.796	0					10	6	2	0	0	0	0.028476	1	1441	1441		24.203	16.512	1	22160			35121	10208	28923	28950	38560	38560					0.07187757539998074
LSAWTLKF	8	Unmodified	_LSAWTLKF_					0	0	0		ENSG00000152785|ENST00000282701|BMP3	ENSG00000152785|ENST00000282701|BMP3	ENSG00000152785|ENST00000282701|BMP3	MULTI-MSMS	OvCa9_classI_Rep4_	4	483.2734069824219	2	483.276378	964.538203	-1.9114	-0.00092375	-2.7712	-0.0013393	-4.6827	-0.002263	483.2747823607356	49.158	1.4044	46.016	45.728	47.132	-3.1416					50	26	4	0	0	0	0.64026	1	2752	2752		55.504	4.1688	1	212590			35122	5645	28924	28951	38561	38561					0.054515632825200555
LSAYWRGVE	9	Unmodified	_LSAYWRGVE_					0	0	0			REV__tr|A0A553SLA2|A0A553SLA2_NIACIYprBribonucleaseH-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20275PE=4SV=1	REV__tr|A0A553SLA2|A0A553SLA2_NIACIYprBribonucleaseH-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20275PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.8063354492188	2	540.777274	1079.53999	0.23544	0.00012732	2.1271	0.0011503	2.3626	0.0012776	540.7782128376465	84.387	1.3265	81.724	81.412	82.738	-2.6629					47	27	3	0	0	0	0.02741	1	7160	7160		60.972	16.855	1	108100	+		35123	30205	28925	28952	38562	38562					0.003405723004561878
LSAYWRGVE	9	Unmodified	_LSAYWRGVE_					0	0	0			REV__tr|A0A553SLA2|A0A553SLA2_NIACIYprBribonucleaseH-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20275PE=4SV=1	REV__tr|A0A553SLA2|A0A553SLA2_NIACIYprBribonucleaseH-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20275PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	540.777274	1079.53999	-0.98842	-0.00053451	3.567	0.001929	2.5786	0.0013944	540.7789813237728	83.612	1.219	82.013	81.369	82.588	-1.5988	0.14448	0.00076373	NaN	60.972	45	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79245	+		35124	30205	28925	28952							0.003405723004561878
LSCDFWEL	8	Unmodified	_LSCDFWEL_					0	0	0		ENSG00000134440|ENST00000256854|NARS1;ENST00000411676.6_1_18:55274615-55283204:-|nuORF	ENSG00000134440|ENST00000256854|NARS1	ENSG00000134440|ENST00000256854|NARS1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.781005859375	2	506.725861	1011.43717	-0.74882	-0.00037945	-1.3004	-0.00065892	-2.0492	-0.0010384	506.7245512070439	103.51	0.83616	101.39	101.12	101.96	-2.1192					20	15	2	0	0	0	0.028476	1	9321	9321		12.959	0	1	30411			35125	4297	28926	28953	38563	38563					-0.0680925648249513
LSCFIYVNLCL	11	Unmodified	_LSCFIYVNLCL_					0	0	0			REV__ENST00000319331.3_1_3:3886186-3886303:+|nuORF	REV__ENST00000319331.3_1_3:3886186-3886303:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	428.9499816894531	3	429.887377	1286.6403	0.31777	0.00013661	2.7672	0.0011896	3.085	0.0013262	429.8885321509681	73.852	1.2393	71.365	71.024	72.264	-2.4873					39	24	3	0	0	0	0.026187	1	3584	3584		6.001	0	1	25494	+		35126	24434	28927	28954	38564	38564					0.008447252476116773
LSCFIYVNLCL	11	Unmodified	_LSCFIYVNLCL_					0	0	0			REV__ENST00000319331.3_1_3:3886186-3886303:+|nuORF	REV__ENST00000319331.3_1_3:3886186-3886303:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	429.887377	1286.6403	-0.65859	-0.00028312	3.2235	0.0013857	2.5649	0.0011026	429.88871744086237	73.512	0.84111	71.112	70.844	71.685	-2.3999	-0.23208	0.00049301	NaN	6.001	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17931	+		35127	24434	28927	28954							0.008447252476116773
LSCFIYVNLCL	11	Unmodified	_LSCFIYVNLCL_					0	0	0			REV__ENST00000319331.3_1_3:3886186-3886303:+|nuORF	REV__ENST00000319331.3_1_3:3886186-3886303:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	429.887377	1286.6403	0.55515	0.00023865	1.9395	0.00083375	2.4946	0.0010724	429.88802897876883	74.787	0.62656	71.556	71.289	71.915	-3.2308	0.21166	-0.0011629	NaN	6.001	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26305	+		35128	24434	28927	28954							0.008447252476116773
LSCKNNKFIC	10	Unmodified	_LSCKNNKFIC_					0	0	0		ENSG00000197140|ENST00000379907|ADAM32	ENSG00000197140|ENST00000379907|ADAM32	ENSG00000197140|ENST00000379907|ADAM32	MULTI-SECPEP	OvCa9_classI_Rep4_	4	584.3054809570312	2	585.293919	1168.57328	-2.9248	-0.0017119	-0.00071586	-4.1899E-07	-2.9255	-0.0017123	585.2937377688842	88.055	1.2114	85.452	84.823	86.034	-2.6027					41	23	2	0	0	0	0.026688	1	7440	7440		49.442	15.269	1	83457			35129	8682	28928	28955	38565	38565					-0.004258852434759319
LSCLGFVVLK	10	Unmodified	_LSCLGFVVLK_					0	0	0		ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	ENSG00000177854|ENST00000369982|TMEM187	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.799072265625	2	539.820095	1077.62564	1.8346	0.00099034	2.1957	0.0011853	4.0303	0.0021756	539.8212823513715	82.97	0.21112	82.97	82.824	83.035	0					6	4	2	0	0	0	0.026994	1	8602	8602		25.574	3.6142	1	157340			35130	7717	28929	28956	38566	38566					0.08993021161768411
LSCLYWLVP	9	Unmodified	_LSCLYWLVP_					0	0	0			REV__ENST00000517550.1_1_7:27163893-27164022:+|nuORF	REV__ENST00000517550.1_1_7:27163893-27164022:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.7672119140625	2	547.291171	1092.56779	1.8768	0.0010271	-3.27	-0.0017897	-1.3933	-0.00076251	547.288970741619	82.094	0.41223	82.094	81.895	82.307	0					13	9	2	0	0	0	0.027462	1	8491	8491		35.201	2.3883	1	188010	+		35131	27011	28930	28957	38567	38567					0.025207592363358344
LSCNGSGCFY	10	Unmodified	_LSCNGSGCFY_					0	0	0			REV__chr11:57368437-57369361|144|11.76|0.52|4.49|+|2|P2RX3,P2RX3|1	REV__chr11:57368437-57369361|144|11.76|0.52|4.49|+|2|P2RX3,P2RX3|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.3232421875	2	525.704602	1049.39465	-0.59636	-0.00031351	4.1783	0.0021966	3.582	0.0018831	525.7065762508782	64.436	0.41567	64.436	64.294	64.71	0					19	9	3	0	0	0	0.026734	1	5870	5870		47.657	17.154	1	433980	+		35132	15860	28931	28958	38568	38568					-0.12806974882369104
LSCRCCCL	8	Unmodified	_LSCRCCCL_					0	0	0		ENST00000375137.6_1_6:32122153-32122825:+|nuORF;ENST00000585246.5_1_6:32122178-32123501:+|nuORF;ENST00000414204.5_3_6:32122148-32122825:+|nuORF;ENST00000424499.1_1_6:32122148-32123662:+|nuORF;ENST00000453656.6_1_6:32122291-32122825:+|nuORF	ENST00000375137.6_1_6:32122153-32122825:+|nuORF	ENST00000375137.6_1_6:32122153-32122825:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.929931640625	2	450.681561	899.34857	0.6212	0.00027996	-4.4399	-0.002001	-3.8187	-0.001721	450.6795740845359	65.038	0.96702	61.553	61.26	62.227	-3.4854					23	19	2	0	0	0	0.028476	1	4736	4736		24.203	0	1	21838			35133	11048	28932	28959	38569	38569					-0.10513034589848758
LSDADFEF	8	Unmodified	_LSDADFEF_					0	0	0			REV__ENSG00000084092|ENST00000264230|NOA1	REV__ENSG00000084092|ENST00000264230|NOA1	MULTI-SECPEP	OvCa9_classI_Rep3	3	472.27728271484375	2	472.205815	942.397078	-0.51507	-0.00024322	-2.4855	-0.0011737	-3.0005	-0.0014169	472.20429796196146	85.715	0.49957	83.495	83.335	83.835	-2.2204					10	9	2	0	0	0	0.028476	1	5052	5052		50.025	0	1	13747	+		35134	17118	28933	28960	38570	38570					-0.0764247988141733
LSDAQRIRELQ	11	Unmodified	_LSDAQRIRELQ_					0	0	0			REV__ENSG00000029725|ENST00000537505|RABEP1	REV__ENSG00000029725|ENST00000537505|RABEP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.21600341796875	3	443.58088	1327.72081	1.3619	0.00060412	-2.6927	-0.0011944	-1.3308	-0.00059033	443.5801955152989	45.393	0.25087	45.393	45.245	45.496	0					10	5	3	0	0	0	0.025995	1	3128	3128		29.551	14.857	1	116330	+		35135	16583	28934	28961	38571	38571					0.07006045886510037
LSDCPRPGSP	10	Unmodified	_LSDCPRPGSP_					0	0	0		ENST00000566567.1_1_9:138999849-139000686:-|nuORF	ENST00000566567.1_1_9:138999849-139000686:-|nuORF	ENST00000566567.1_1_9:138999849-139000686:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	514.8035888671875	2	514.745116	1027.47568	-0.11357	-5.8458E-05	1.1841	0.00060951	1.0705	0.00055105	514.7456150294898	94.649	1.105	92.754	92.46	93.565	-1.8956					41	21	3	0	0	0	0.026968	1	6157	6157		29.17	6.1276	1	43583			35136	13847	28935	28962	38572	38572					-0.036959508479640135
LSDDHVLIL	9	Unmodified	_LSDDHVLIL_					0	0	0		ENSG00000095485|ENST00000354105|CWF19L1;nc|ENSG00000095485|Q69YN2-2|CWF19L1;nc|ENSG00000095485|Q69YN2-3|CWF19L1	ENSG00000095485|ENST00000354105|CWF19L1	ENSG00000095485|ENST00000354105|CWF19L1	MULTI-MSMS	OvCa9_classI_Rep2	2	512.7861938476562	2	512.787307	1023.56006	0.17929	9.1937E-05	-0.73412	-0.00037645	-0.55483	-0.00028451	512.7868569035359	108.11	1.6289	107.89	107.53	109.16	-0.22498					90	32	4	0	0	0	0.22961	3	10105	10105;10109;10122		71.296	13.066	1	274530			35137	1930	28936	28963	38573;38574;38575	38573					0.049223232404415285
LSDDHVLIL	9	Unmodified	_LSDDHVLIL_					0	0	0		ENSG00000095485|ENST00000354105|CWF19L1;nc|ENSG00000095485|Q69YN2-2|CWF19L1;nc|ENSG00000095485|Q69YN2-3|CWF19L1	ENSG00000095485|ENST00000354105|CWF19L1	ENSG00000095485|ENST00000354105|CWF19L1	MULTI-MSMS	OvCa9_classI_Rep3	3	512.7864990234375	2	512.787307	1023.56006	0.11256	5.7719E-05	-0.83263	-0.00042696	-0.72007	-0.00036924	512.786824757787	108.89	2.0869	107.69	107.36	109.45	-1.1978					84	39	3	0	0	0	0.21395	1	7796	7796		73.975	8.1716	1	319940			35138	1930	28936	28963	38576	38576					0.049223232404415285
LSDELPGTHIG	11	Unmodified	_LSDELPGTHIG_					0	0	0			REV__ENSG00000196900|ENST00000357147|TEX43	REV__ENSG00000196900|ENST00000357147|TEX43	MULTI-MSMS	OvCa9_classI_Rep4_	4	569.787841796875	2	569.790578	1137.5666	-0.9559	-0.00054466	-0.35458	-0.00020204	-1.3105	-0.0007467	569.7902502017694	146.03	1.5267	144.59	144.15	145.67	-1.4357					62	26	4	0	0	0	0.58572	1	14333	14333		45.972	0	1	170700	+		35139	22873	28937	28964	38577	38577					0.0033221640117062634
LSDELRKVV	9	Unmodified	_LSDELRKVV_					0	0	0			REV__tr|A0A7D6VQV5|A0A7D6VQV5_9CLOT6-phospho-beta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16735PE=3SV=1	REV__tr|A0A7D6VQV5|A0A7D6VQV5_9CLOT6-phospho-beta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16735PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.8154296875	2	529.813856	1057.61316	-0.29314	-0.00015531	-0.61581	-0.00032626	-0.90895	-0.00048157	529.8135501116423	51.484	1.3146	51.484	51.207	52.522	0					48	30	2	0	0	0	0.13482	1	3982	3982		87.754	8.3033	1	8407200	+		35140	31360	28938	28965	38578	38578					0.08665701023096517
LSDFLFLA	8	Unmodified	_LSDFLFLA_					0	0	0		ENSG00000175514|ENST00000312457|GPR152	ENSG00000175514|ENST00000312457|GPR152	ENSG00000175514|ENST00000312457|GPR152	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.2537536621094	2	463.255111	924.49567	-0.12571	-5.8237E-05	-4.3566	-0.0020182	-4.4823	-0.0020765	463.25297521688265	59.711	1.43	56.319	55.953	57.383	-3.392					75	28	4	0	0	0	0.69415	1	4018	4018		44.531	3.7529	1	780060			35141	7550	28939	28966	38579	38579					0.030401681542798542
LSDFMVAGSE	10	Oxidation (M)	_LSDFM(Oxidation (M))VAGSE_		LSDFM(1)VAGSE		LSDFM(55)VAGSE	0	0	1		ENSG00000133401|ENST00000438447|PDZD2;ENST00000502489.5_1_5:31983264-32077762:+|nuORF;PDZD2|p.P1120Tfs*15|1|0.25|ENSG00000133401|chr5:32074461-32074462|-/G|frameshift_variant;nc|ENSG00000133401|O15018-2|PDZD2	ENSG00000133401|ENST00000438447|PDZD2	ENSG00000133401|ENST00000438447|PDZD2	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.2396850585938	2	536.23679	1070.45903	-1.1864	-0.00063618	4.3765	0.0023469	3.1902	0.0017107	536.2390140966158	98.889	1.2375	96.564	96.33	97.568	-2.3253					62	23	4	0	0	0	0.49558	1	8807	8807		54.776	10.66	1	385670			35142	4219	28940	28967	38580	38580		136			-0.07338496524585025
LSDGGSWCGQV	11	Carbamidomethyl (C)	_LSDGGSWC(Carbamidomethyl (C))GQV_	LSDGGSWC(1)GQV		LSDGGSWC(60)GQV		0	1	0		ENST00000489841.5_1_7:99694943-99694994:-|nuORF	ENST00000489841.5_1_7:99694943-99694994:-|nuORF	ENST00000489841.5_1_7:99694943-99694994:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	583.248046875	2	583.250763	1164.48697	0.67489	0.00039363	-3.8294	-0.0022335	-3.1545	-0.0018399	583.2484035489165	130.41	1.8783	130.18	129.81	131.69	-0.22696					86	37	3	0	0	0	0.41398	1	12831	12831		60.118	7.1816	1	516500			35143	12686	28941	28968	38581	38581	146				-0.08869173544508158
LSDGVVIHLA	10	Unmodified	_LSDGVVIHLA_					0	0	0			REV__ENSG00000100422|ENST00000216264|CERK	REV__ENSG00000100422|ENST00000216264|CERK	MULTI-SECPEP	OvCa9_classI_Rep2	2	512.8138427734375	2	512.295299	1022.57605	-1.6135	-0.00082661	0.99275	0.00050858	-0.62079	-0.00031803	512.295985308513	63.156	1.7325	60.411	59.899	61.632	-2.7444					87	32	5	0	0	0	0.026552	1	4819	4819		63.306	7.8021	1	83953	+		35144	17414	28942	28969	38582	38582					0.06566029477323809
LSDGVVIHLA	10	Unmodified	_LSDGVVIHLA_					0	0	0			REV__ENSG00000100422|ENST00000216264|CERK	REV__ENSG00000100422|ENST00000216264|CERK	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	512.295299	1022.57605	-0.13249	-6.7872E-05	-0.26236	-0.00013441	-0.39485	-0.00020228	512.2950622568568	64.039	1.1159	60.564	60.204	61.319	-3.475	0.07615	-0.00031015	NaN	63.306	36	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178010	+		35145	17414	28942	28969							0.06566029477323809
LSDHHIYL	8	Unmodified	_LSDHHIYL_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	OvCa99_classI_Rep5	1	499.2601013183594	2	499.258717	996.50288	0.34305	0.00017127	-0.70016	-0.00034956	-0.35711	-0.00017829	499.25824039056675	72.011	0.82489	72.011	71.749	72.574	0					62	19	4	0	0	0	0.35894	2	7008	6979;7008		96.048	10.688	1	7303000			35146	5491	28943	28970	38583;38584	38584					0.004489007547022084
LSDHLRSIE	9	Unmodified	_LSDHLRSIE_					0	0	0			REV__ENSG00000118363|ENST00000263672|SPCS2	REV__ENSG00000118363|ENST00000263672|SPCS2	MULTI-MSMS	OvCa99_classI_Rep5	1	535.2916259765625	2	535.285463	1068.55637	1.2845	0.00068756	4.264	0.0022824	5.5484	0.00297	535.2878202876262	123.3	0.83145	123.3	123.04	123.87	0					26	17	2	0	0	0	0.21231	1	14230	14230		74.255	8.4519	1	156860	+		35147	18392	28944	28971	38585	38585					0.024836534665837462
LSDHLRSIE	9	Unmodified	_LSDHLRSIE_					0	0	0			REV__ENSG00000118363|ENST00000263672|SPCS2	REV__ENSG00000118363|ENST00000263672|SPCS2	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	535.285463	1068.55637	1.2845	0.00068756	4.264	0.0022824	5.5484	0.00297	535.2878202876262	123.3	0.83145	123.3	123.04	123.87	0	0.13356	0.00010838	NaN	74.255	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156860	+		35148	18392	28944	28971							0.024836534665837462
LSDHLRSIE	9	Unmodified	_LSDHLRSIE_					0	0	0			REV__ENSG00000118363|ENST00000263672|SPCS2	REV__ENSG00000118363|ENST00000263672|SPCS2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	535.285463	1068.55637	-1.747	-0.00093514	3.4562	0.0018501	1.7093	0.00091494	535.2873379534178	124.43	0.35989	123.04	122.77	123.13	-1.3908	-0.13356	-0.00075634	NaN	74.255	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10155	+		35149	18392	28944	28971							0.024836534665837462
LSDHPNVVR	9	Unmodified	_LSDHPNVVR_					0	0	0		ENSG00000095777|ENST00000642920|MYO3A;nc|ENSG00000095777|Q8NEV4-2|MYO3A;chr10:26201305-26211843|273|11.34|0.44|4.7|+|ENST00000647478|MYO3A,MYO3A	ENSG00000095777|ENST00000642920|MYO3A	ENSG00000095777|ENST00000642920|MYO3A	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.8114013671875	2	518.780348	1035.54614	1.7242	0.00089446	0.67705	0.00035124	2.4012	0.0012457	518.7809434074849	87.623	0.24589	86.192	86.09	86.335	-1.4311					6	4	2	0	0	0	0.027433	1	7642	7642		51.335	8.9393	1	17716			35150	1939	28945	28972	38586	38586					0.029790905319941885
LSDKKRPE	8	Unmodified	_LSDKKRPE_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.7794494628906	2	486.777274	971.539994	-0.46352	-0.00022563	4.1737	0.0020316	3.7101	0.001806	486.7792663388306	91.629	2.5685	89.086	88.501	91.07	-2.5425					112	50	3	0	0	0	0.55617	1	7990	7990		71.877	7.6702	1	2258400			35151	8756	28946	28973	38587	38587					0.05308572300475589
LSDKLVKAI	9	Unmodified	_LSDKLVKAI_					0	0	0			REV__ENSG00000140575|ENST00000268182|IQGAP1	REV__ENSG00000140575|ENST00000268182|IQGAP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.76788330078125	2	493.815867	985.617182	-0.59616	-0.0002944	0.063954	3.1582E-05	-0.53221	-0.00026281	493.815743770663	69.659	0.33842	66.177	65.91	66.249	-3.4812					17	6	3	0	0	0	0.027247	1	5213	5213		69.628	1.1429	1	161990	+		35152	19688	28947	28974	38588	38588					0.12379790516808953
LSDKVVASVK	10	Unmodified	_LSDKVVASVK_					0	0	0		ENSG00000047410|ENST00000367478|TPR;ENST00000481347.1_1_1:186312376-186313186:-|nuORF	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	OvCa99_classI_Rep5	1	523.316162109375	2	523.316232	1044.61791	-1.021	-0.00053428	0.51561	0.00026983	-0.50534	-0.00026446	523.3163834365452	33.849	0.48101	33.849	33.632	34.113	0					18	9	2	0	0	0	0.42082	1	1585	1585		65.465	3.358	1	429140			35153	1144	28948	28975	38589	38589					0.09738585165860059
LSDLDAIGVTY	11	Unmodified	_LSDLDAIGVTY_					0	0	0		tr|A0A7D6ZFX6|A0A7D6ZFX6_9CLOTtRNAN6-adenosinethreonylcarbamoyltransferaseOS=ClostridiumintestinaleOX=36845GN=tsaDPE=3SV=1	tr|A0A7D6ZFX6|A0A7D6ZFX6_9CLOTtRNAN6-adenosinethreonylcarbamoyltransferaseOS=ClostridiumintestinaleOX=36845GN=tsaDPE=3SV=1	tr|A0A7D6ZFX6|A0A7D6ZFX6_9CLOTtRNAN6-adenosinethreonylcarbamoyltransferaseOS=ClostridiumintestinaleOX=36845GN=tsaDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8021850585938	2	583.800611	1165.58667	0.97841	0.0005712	3.0849	0.0018009	4.0633	0.0023721	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.71498	1	1346	1346		24.519	1.4767	1	155970			35154	35528	28949	28976	38590	38590					0.010499673411231925
LSDLQKYA	8	Unmodified	_LSDLQKYA_					0	0	0		nc|ENSG00000147081|Q5JQC9-2|AKAP4;ENSG00000147081|ENST00000358526|AKAP4	nc|ENSG00000147081|Q5JQC9-2|AKAP4	nc|ENSG00000147081|Q5JQC9-2|AKAP4	MULTI-MSMS	OvCa99_classI_Rep5	1	469.2541198730469	2	469.2531	936.491647	2.5584	0.0012005	-0.2929	-0.00013744	2.2655	0.0010631	469.2528182456816	84.534	1.3233	84.534	84.261	85.585	0					60	31	3	0	0	0	0.56113	1	8855	8855		71.378	0	1	5994500			35155	5328	28950	28977	38591	38591					0.020860786605680914
LSDPAAQPLL	10	Unmodified	_LSDPAAQPLL_					0	0	0		ENST00000509475.5_1_4:40892379-41016395:-|nuORF;nc|ENSG00000163697|Q92870-2|APBB2;nc|ENSG00000163697|Q92870|APBB2;ENSG00000163697|ENST00000508593|APBB2	ENST00000509475.5_1_4:40892379-41016395:-|nuORF	ENST00000509475.5_1_4:40892379-41016395:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.7872314453125	2	512.787307	1023.56006	-0.017962	-9.2106E-06	-0.45828	-0.000235	-0.47624	-0.00024421	512.7870225821379	109.44	2.2555	107.72	107.42	109.68	-1.7256					93	42	4	0	0	0	0.28845	1	10043	10043		82.241	2.3013	1	341840			35156	6348	28951	28978	38592	38592					0.04922323240418791
LSDPHKKE	8	Unmodified	_LSDPHKKE_					0	0	0			REV__tr|A0A553SQJ4|A0A553SQJ4_NIACIParAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07800PE=4SV=1	REV__tr|A0A553SQJ4|A0A553SQJ4_NIACIParAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07800PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.94073486328125	2	477.256174	952.497795	-0.47373	-0.00022609	-0.12683	-6.0529E-05	-0.60056	-0.00028662	477.2559109362702	46.157	0.54812	43.448	43.048	43.596	-2.7097					14	10	2	0	0	0	0.028476	1	2693	2693		16.473	0	1	14590	+		35157	30636	28952	28979	38593	38593					0.019645968920940504
LSDQQDQAI	9	Unmodified	_LSDQQDQAI_					0	0	0		ENSG00000164252|ENST00000312916|AGGF1;nc|ENSG00000164252|Q8N302-3|AGGF1	ENSG00000164252|ENST00000312916|AGGF1	ENSG00000164252|ENST00000312916|AGGF1	MULTI-MSMS	OvCa99_classI_Rep5	1	509.2455139160156	2	509.246003	1016.47745	-0.22405	-0.0001141	-0.53068	-0.00027025	-0.75473	-0.00038434	509.2457618868336	35.762	0.96764	35.762	35.52	36.487	0					54	20	5	0	0	0	0.16264	1	1849	1849		82.75	18.543	1	2931800			35158	6436	28953	28980	38594	38594					-0.030126185583753795
LSDRFLGL	8	Unmodified	_LSDRFLGL_					0	0	0		PRPF8|p.F2270L|1|0.1|ENSG00000174231|chr17:1651153-1651153|A/G|missense_variant	PRPF8|p.F2270L|1|0.1|ENSG00000174231|chr17:1651153-1651153|A/G|missense_variant	PRPF8|p.F2270L|1|0.1|ENSG00000174231|chr17:1651153-1651153|A/G|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	460.7655334472656	2	460.763635	919.512717	2.5052	0.0011543	-0.36301	-0.00016726	2.1422	0.00098704	460.7633011089813	100.61	0.82691	100.61	100.32	101.15	0					46	19	3	0	0	0	0.42208	1	11155	11155		85.359	0	1	3411300			35159	15525	28954	28981	38595	38595					0.04974088760093309
LSDRPGAGLK	10	Unmodified	_LSDRPGAGLK_					0	0	0			REV__tr|A0A553SKD9|A0A553SKD9_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_18645PE=4SV=1	REV__tr|A0A553SKD9|A0A553SKD9_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_18645PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	507.2926330566406	2	507.290548	1012.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.579	1	67.579	67.079	68.079	0								0	0	0	0.13914	1	6332	6332		53.089	0.15226	1		+		35160	30113	28955	28982	38596	38596					0.06076261191810772
LSDSKYRN	8	Unmodified	_LSDSKYRN_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.7704162597656	2	491.751256	981.487959	-0.014802	-7.2787E-06	-0.11374	-5.5933E-05	-0.12854	-6.3212E-05	491.75071835691136	46.892	0.2036	43.82	43.707	43.911	-3.0724					5	3	2	0	0	0	0.028476	1	2495	2495		60.972	0	1	8596.6			35161	1687	28956	28983	38597	38597					-0.0035259111327832215
LSDSMMSAL	9	2 Oxidation (M)	_LSDSM(Oxidation (M))M(Oxidation (M))SAL_		LSDSM(1)M(1)SAL		LSDSM(77)M(77)SAL	0	0	2		ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.76788330078125	2	493.712093	985.409633	-0.57498	-0.00028387	1.9457	0.0009606	1.3707	0.00067672	493.71306165218743	69.773	1.1212	66.292	66.009	67.13	-3.4812					27	22	2	0	0	0	0.027232	1	5213	5213		76.774	22.009	1	23725			35162	3956	28957	28984	38598	38598		120;121			-0.08365527805028705
LSDSRPAMAP	10	Unmodified	_LSDSRPAMAP_					0	0	0		ENSG00000172725|ENST00000341356|CORO1B	ENSG00000172725|ENST00000341356|CORO1B	ENSG00000172725|ENST00000341356|CORO1B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.8246459960938	2	522.760766	1043.50698	-1.1438	-0.00059794	-2.499	-0.0013064	-3.6428	-0.0019043	522.7593672694506	80.401	1.421	77.69	77.417	78.838	-2.7106					45	28	2	0	0	0	0.026523	1	6687	6687		58.782	0	1	529180			35163	7314	28958	28985	38599	38599					-0.013033778139060814
LSDSVSHTL	9	Unmodified	_LSDSVSHTL_					0	0	0			REV__NCKAP5|p.S1071Vfs*4|1|0.05|ENSG00000176771|chr2:132783600-132783601|-/C|frameshift_variant	REV__NCKAP5|p.S1071Vfs*4|1|0.05|ENSG00000176771|chr2:132783600-132783601|-/C|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.27947998046875	2	479.745639	957.476725	-0.45887	-0.00022014	-2.0929	-0.0010041	-2.5518	-0.0012242	479.74466802904806	95.141	0.39507	94.113	93.972	94.367	-1.0281					10	7	2	0	0	0	0.027279	1	8568	8568		82.305	29.368	1	7223.3	+		35164	21968	28959	28986	38600	38600					-0.0037141320741511663
LSDTMLVND	9	Unmodified	_LSDTMLVND_					0	0	0		tr|A0A553SH39|A0A553SH39_NIACIprecorrin-2dehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_12085PE=4SV=1	tr|A0A553SH39|A0A553SH39_NIACIprecorrin-2dehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_12085PE=4SV=1	tr|A0A553SH39|A0A553SH39_NIACIprecorrin-2dehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_12085PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.2935791015625	2	504.239332	1006.46411	1.622	0.00081789	0.80195	0.00040437	2.424	0.0012223	504.2395692238135	110.09	0.62864	110.09	109.73	110.35	0					17	13	2	0	0	0	0.027462	1	12472	12472		19.104	6.2918	1	121400			35165	33234	28960	28987	38601	38601					-0.03886192661968835
LSDVHRET	8	Unmodified	_LSDVHRET_					0	0	0		ENSG00000004142|ENST00000540200|POLDIP2	ENSG00000004142|ENST00000540200|POLDIP2	ENSG00000004142|ENST00000540200|POLDIP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.74444580078125	2	478.743431	955.472308	0.25162	0.00012046	-0.8163	-0.0003908	-0.56468	-0.00027034	478.7428902301346	48.021	1.6805	44.913	44.185	45.866	-3.1077					51	32	2	0	0	0	0.59904	1	2633	2633		64.207	3.2353	1	403960			35166	824	28961	28988	38602	38602					-0.007208776303286868
LSEAKPLYSAR	11	Unmodified	_LSEAKPLYSAR_					0	0	0			REV__nc|ENSG00000062650|Q7Z5K2-3|WAPL	REV__nc|ENSG00000062650|Q7Z5K2-3|WAPL	MULTI-MSMS	OvCa9_classI_Rep3	3	412.231201171875	3	412.231189	1233.67174	1.934	0.00079726	-0.68164	-0.00028099	1.2524	0.00051626	412.2308161483838	65.879	3.828	62.933	62.452	66.28	-2.9459					181	75	4	0	0	0	0.72485	1	2642	2642		11.455	0	1	1016400	+		35167	28720	28962	28989	38603	38603					0.06424757597551434
LSEAKTEEP	9	Unmodified	_LSEAKTEEP_					0	0	0		nc|ENSG00000163001|Q96G28-2|CFAP36;ENSG00000163001|ENST00000349456|CFAP36;CFAP36|p.S238Pfs*7|1|0.24|ENSG00000163001|chr2:55544007-55544007|C/-|frameshift_variant	nc|ENSG00000163001|Q96G28-2|CFAP36	nc|ENSG00000163001|Q96G28-2|CFAP36	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.3016052246094	2	502.250754	1002.48696	-0.82592	-0.00041482	1.1766	0.00059094	0.35066	0.00017612	502.25120572003664	104.81	0.52255	102.69	102.38	102.9	-2.1192					14	9	2	0	0	0	0.027185	1	9460	9460		71.877	0	1	14621			35168	15136	28963	28990	38604	38604					-0.014188502728529784
LSEALPRDN	9	Unmodified	_LSEALPRDN_					0	0	0		ENST00000447052.1_1_21:24762753-24763314:+|nuORF	ENST00000447052.1_1_21:24762753-24763314:+|nuORF	ENST00000447052.1_1_21:24762753-24763314:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.76300048828125	2	507.764363	1013.51417	-0.13628	-6.9201E-05	-2.0596	-0.0010458	-2.1959	-0.001115	507.76318430123507	114.27	1.6293	114.16	113.27	114.9	-0.11777					38	22	3	0	0	0	0.38969	1	10867	10867		52.937	1.744	1	67129			35169	12001	28964	28991	38605	38605					0.007956780581821477
LSEAQNLELR	10	Unmodified	_LSEAQNLELR_					0	0	0		nc|ENSG00000137171|Q9NSK0-2|KLC4	nc|ENSG00000137171|Q9NSK0-2|KLC4	nc|ENSG00000137171|Q9NSK0-2|KLC4	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.814697265625	2	586.817127	1171.6197	-1.4684	-0.00086167	-4.1725	-0.0024485	-5.6409	-0.0033102	586.8145964441786	44.778	2.0547	41.739	40.958	43.013	-3.0385					98	39	3	0	0	0	0.44722	1	2249	2249		61.691	10.499	1	377790			35170	15038	28965	28992	38606	38606					0.04075594183791509
LSEAQNLELR	10	Unmodified	_LSEAQNLELR_					0	0	0		nc|ENSG00000137171|Q9NSK0-2|KLC4	nc|ENSG00000137171|Q9NSK0-2|KLC4	nc|ENSG00000137171|Q9NSK0-2|KLC4	MULTI-MATCH	OvCa99_classI_Rep5	1		2	586.817127	1171.6197	-0.66835	-0.0003922	-7.6791	-0.0045062	-8.3474	-0.0048984	587.3145314197458	41.509	0.47778	41.509	41.375	41.853	0	-0.16967	-0.0033364	NaN	61.691	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	205580			35171	15038	28965	28992							0.04075594183791509
LSEAQNLELR	10	Unmodified	_LSEAQNLELR_					0	0	0		nc|ENSG00000137171|Q9NSK0-2|KLC4	nc|ENSG00000137171|Q9NSK0-2|KLC4	nc|ENSG00000137171|Q9NSK0-2|KLC4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	586.817127	1171.6197	-0.036121	-2.1197E-05	-5.3017	-0.0031111	-5.3378	-0.0031323	586.8136982374166	44.498	1.4433	41.788	41.203	42.647	-2.7097	0.10918	-0.00054621	NaN	61.691	58	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83684			35172	15038	28965	28992							0.04075594183791509
LSEDFYEQL	9	Unmodified	_LSEDFYEQL_					0	0	0			REV__ENSG00000128242|ENST00000406361|GAL3ST1	REV__ENSG00000128242|ENST00000406361|GAL3ST1	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.7890014648438	2	572.263862	1142.51317	2.865	0.0016395	0.00078346	4.4835E-07	2.8658	0.00164	572.2634474465225	89.662	0.94993	89.662	89.193	90.143	0					58	22	4	0	0	0	0.027444	1	9588	9588		54.722	0	1	1490600	+		35173	18846	28966	28993	38607	38607					-0.05238581101366435
LSEEELKQL	9	Unmodified	_LSEEELKQL_					0	0	0		TMOD2|p.E280Kfs*5|1|0.28|ENSG00000128872|chr15:51798302-51798302|G/-|frameshift_variant;nc|ENSG00000128872|Q9NZR1-2|TMOD2;ENSG00000128872|ENST00000249700|TMOD2;ENST00000560576.1_1_15:52058638-52058794:+|nuORF;ENST00000539962.6_1_15:52058638-52060523:+|nuORF	TMOD2|p.E280Kfs*5|1|0.28|ENSG00000128872|chr15:51798302-51798302|G/-|frameshift_variant	TMOD2|p.E280Kfs*5|1|0.28|ENSG00000128872|chr15:51798302-51798302|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	545.3185424804688	2	544.795329	1087.5761	-2.0914	-0.0011394	1.9478	0.0010612	-0.14353	-7.8194E-05	545.2988307090445	62.695	0.30859	59.95	59.695	60.004	-2.7444					6	5	2	0	0	0	0.027295	1	4685	4685		74.255	10.048	1	7905.2			35174	3909	28967	28994	38608	38608					0.03581984686684336
LSEENMQEL	9	Unmodified	_LSEENMQEL_					0	0	0			REV__nc|ENSG00000139926|Q96NE9-3|FRMD6	REV__nc|ENSG00000139926|Q96NE9-3|FRMD6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.7808837890625	2	546.747521	1091.48049	-0.064077	-3.5034E-05	-2.7378	-0.0014969	-2.8019	-0.0015319	546.7456740961835	123.09	1.0411	121.72	121.36	122.4	-1.3666					26	20	2	0	0	0	0.027418	1	11704	11704		62.107	12.083	1	31691	+		35175	19644	28968	28995	38609	38609					-0.06159111495867364
LSEFHPSDSM	10	Oxidation (M)	_LSEFHPSDSM(Oxidation (M))_		LSEFHPSDSM(1)		LSEFHPSDSM(49)	0	0	1		IL1RAPL2|p.P604S|1|0.11|ENSG00000189108|chrX:105767410-105767410|C/T|missense_variant	IL1RAPL2|p.P604S|1|0.11|ENSG00000189108|chrX:105767410-105767410|C/T|missense_variant	IL1RAPL2|p.P604S|1|0.11|ENSG00000189108|chrX:105767410-105767410|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	583.2473754882812	2	583.245146	1164.47574	3.0149	0.0017584	3.4573	0.0020164	6.4721	0.0037748	583.2470151184266	131.3	1.8647	129.82	129.5	131.36	-1.4779					84	37	3	0	0	0	0.53885	1	12601	12601		49.442	7.0454	1	532900			35176	14504	28969	28996	38610	38610		361			-0.09991995638665685
LSEHGIRPQ	9	Unmodified	_LSEHGIRPQ_					0	0	0			REV__ENST00000269300.8_1_17:8782612-8782705:-|nuORF	REV__ENST00000269300.8_1_17:8782612-8782705:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.6851196289062	2	518.780348	1035.54614	-0.47923	-0.00024861	-0.21765	-0.00011291	-0.69688	-0.00036153	518.780208209422	58.423	1.2015	55.031	54.752	55.953	-3.392					46	23	3	0	0	0	0.027295	1	3827	3827		64.207	0	1	148970	+		35177	24063	28970	28997	38611	38611					0.029790905319941885
LSEHTNCDRL	10	Unmodified	_LSEHTNCDRL_					0	0	0			REV__ENSG00000182674|ENST00000523207|KCNB2	REV__ENSG00000182674|ENST00000523207|KCNB2	MULTI-SECPEP	OvCa9_classI_Rep2	2	594.2987060546875	2	594.277312	1186.54007	-1.09	-0.00064777	-1.3525	-0.00080379	-2.4426	-0.0014516	594.2765074661994	75.833	1.8714	73.979	73.323	75.195	-1.854					85	35	4	0	0	0	0.026577	1	6215	6215		49.536	14.384	1	184850	+		35178	22311	28971	28998	38612	38612					-0.04573795761848487
LSEIEDSGY	9	Unmodified	_LSEIEDSGY_					0	0	0		tr|A0A7D6ZIY7|A0A7D6ZIY7_9CLOTPpx/GppAfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_09095PE=4SV=1	tr|A0A7D6ZIY7|A0A7D6ZIY7_9CLOTPpx/GppAfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_09095PE=4SV=1	tr|A0A7D6ZIY7|A0A7D6ZIY7_9CLOTPpx/GppAfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_09095PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3152160644531	2	506.727112	1011.43967	0.30552	0.00015482	3.4346	0.0017404	3.7401	0.0018952	506.7286989939803	114.08	0.72021	112.64	112.43	113.15	-1.4461					28	13	3	0	0	0	0.027462	1	10631	10631		31.955	18.18	1	29624			35179	35631	28972	28999	38613	38613					-0.0655912954384803
LSEIEDSGY	9	Unmodified	_LSEIEDSGY_					0	0	0		tr|A0A7D6ZIY7|A0A7D6ZIY7_9CLOTPpx/GppAfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_09095PE=4SV=1	tr|A0A7D6ZIY7|A0A7D6ZIY7_9CLOTPpx/GppAfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_09095PE=4SV=1	tr|A0A7D6ZIY7|A0A7D6ZIY7_9CLOTPpx/GppAfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_09095PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	506.727112	1011.43967	0.35706	0.00018093	3.3734	0.0017094	3.7305	0.0018903	506.72855065413347	113.03	0.69034	112.91	112.52	113.21	-0.12174	0.13643	-3.6466E-05	NaN	31.955	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15755			35180	35631	28972	28999							-0.0655912954384803
LSEIEEHL	8	Unmodified	_LSEIEEHL_					0	0	0		ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-3|DDX1	ENSG00000079785|ENST00000233084|DDX1	ENSG00000079785|ENST00000233084|DDX1	MULTI-MSMS	OvCa99_classI_Rep5	1	485.2497863769531	2	485.248015	968.481476	2.095	0.0010166	0.16965	8.2323E-05	2.2647	0.0010989	485.24797373095896	76.413	1.5982	76.413	76.158	77.757	0					74	38	4	0	0	0	0.039908	2	7648	7648;7679		173.85	35.369	1	5759300			35181	1620	28973	29000	38614;38615	38614					-0.004025290646723079
LSEIEEHL	8	Unmodified	_LSEIEEHL_					0	0	0		ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-3|DDX1	ENSG00000079785|ENST00000233084|DDX1	ENSG00000079785|ENST00000233084|DDX1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	485.248015	968.481476	0.032753	1.5893E-05	0.61537	0.00029861	0.64812	0.0003145	485.24803545790235	78.513	1.3163	76.773	76.196	77.513	-1.7398	0.28733	0.00035259	NaN	173.85	46	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35039			35182	1620	28973	29000							-0.004025290646723079
LSEIEEHL	8	Unmodified	_LSEIEEHL_					0	0	0		ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-3|DDX1	ENSG00000079785|ENST00000233084|DDX1	ENSG00000079785|ENST00000233084|DDX1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	485.248015	968.481476	-0.6431	-0.00031206	0.56833	0.00027578	-0.074776	-3.6285E-05	485.24823414129577	78.571	1.4458	76.218	75.85	77.296	-2.3527	-0.26745	0.00030693	NaN	173.85	47	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59618			35183	1620	28973	29000							-0.004025290646723079
LSEIEEHL	8	Unmodified	_LSEIEEHL_					0	0	0		ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-3|DDX1	ENSG00000079785|ENST00000233084|DDX1	ENSG00000079785|ENST00000233084|DDX1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	485.248015	968.481476	-0.30521	-0.0001481	-0.21665	-0.00010513	-0.52186	-0.00025323	485.24794109588083	79.29	1.1509	76.538	76.274	77.425	-2.7514	0.052826	-0.00045489	NaN	173.85	36	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93319			35184	1620	28973	29000							-0.004025290646723079
LSEKRRRA	8	Unmodified	_LSEKRRRA_					0	0	0		ENSG00000136830|ENST00000373312|NIBAN2;nc|ENSG00000136830|Q96TA1-2|NIBAN2	ENSG00000136830|ENST00000373312|NIBAN2	ENSG00000136830|ENST00000373312|NIBAN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.31182861328125	2	508.309606	1014.60466	1.1935	0.00060666	1.46	0.00074216	2.6535	0.0013488	508.31022832895366	129.39	1.6322	127.93	127.6	129.23	-1.4565					60	32	3	0	0	0	0.48084	1	12380	12380		79.451	7.5735	1	70621			35185	4521	28974	29001	38616	38616					0.09794191897128712
LSEKRRRA	8	Unmodified	_LSEKRRRA_					0	0	0		ENSG00000136830|ENST00000373312|NIBAN2;nc|ENSG00000136830|Q96TA1-2|NIBAN2	ENSG00000136830|ENST00000373312|NIBAN2	ENSG00000136830|ENST00000373312|NIBAN2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	508.309606	1014.60466	0.3625	0.00018426	2.2886	0.0011633	2.6511	0.0013476	508.31066028746386	129.05	0.98875	127.95	127.61	128.6	-1.1003	0.0091178	0.00055084	NaN	79.451	36	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23627			35186	4521	28974	29001							0.09794191897128712
LSELGPPLQRR	11	Unmodified	_LSELGPPLQRR_					0	0	0			REV__nc|ENSG00000278619|Q6IN84-2|MRM1	REV__nc|ENSG00000278619|Q6IN84-2|MRM1	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3689575195312	2	633.369861	1264.72517	-4.5141	-0.0028591	3.4388	0.002178	-1.0753	-0.00068108	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.72473	1	15581	15581		19.104	0.84144	1	369460	+		35187	23644	28975	29002	38617	38617					0.1033955510006308
LSELGPPLQRR	11	Unmodified	_LSELGPPLQRR_					0	0	0			REV__nc|ENSG00000278619|Q6IN84-2|MRM1	REV__nc|ENSG00000278619|Q6IN84-2|MRM1	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.3685302734375	2	633.369861	1264.72517	-3.7067	-0.0023477	2.7994	0.0017731	-0.90726	-0.00057463	633.3714685413702	153.42	3.7144	151.96	150.68	154.4	-1.4516					273	94	4	0	0	0	0.72466	1	15105	15105		19.997	0.89325	1	395790	+		35188	23644	28975	29002	38618	38618					0.1033955510006308
LSELPWTAL	9	Unmodified	_LSELPWTAL_					0	0	0		ENST00000588753.1_1_21:47660768-47664506:+|nuORF	ENST00000588753.1_1_21:47660768-47664506:+|nuORF	ENST00000588753.1_1_21:47660768-47664506:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	515.2798461914062	2	515.2844	1028.55425	-0.68048	-0.00035064	0.13531	6.9724E-05	-0.54516	-0.00028091	515.2845057821427	103.46	1.5341	102.77	102.48	104.01	-0.68459					81	30	5	0	0	0	0.36502	1	9546	9546		55.504	7.5447	1	483210			35189	14078	28976	29003	38619	38619					0.04111224728740126
LSEMQRSLA	9	Unmodified	_LSEMQRSLA_					0	0	0			REV__ENST00000439647.5_1_3:183899506-183899602:+|nuORF	REV__ENST00000439647.5_1_3:183899506-183899602:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.8314208984375	2	517.768591	1033.52263	-1.4501	-0.0007508	1.1032	0.00057122	-0.34684	-0.00017958	517.7692253212178	95.355	0.70111	92.886	92.611	93.312	-2.4685					20	13	2	0	0	0	0.027447	1	8381	8381		39.253	0	1	40561	+		35190	25823	28977	29004	38620	38620					0.007209087031696981
LSENIVIVK	9	Unmodified	_LSENIVIVK_					0	0	0			REV__tr|A0A7D6VRW2|A0A7D6VRW2_9CLOTLactateutilizationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02585PE=4SV=1	REV__tr|A0A7D6VRW2|A0A7D6VRW2_9CLOTLactateutilizationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02585PE=4SV=1	MSMS	OvCa9_classI_Rep2	2	507.81353759765625	2	507.813325	1013.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.429	1	95.401	94.901	95.901	-1.0281								0	0	0	0.028532	1	8697	8697		110.12	0.64154	1		+		35191	31450	28978	29005	38621	38621					0.10583486654184071
LSENIVIVK	9	Unmodified	_LSENIVIVK_					0	0	0			REV__tr|A0A7D6VRW2|A0A7D6VRW2_9CLOTLactateutilizationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02585PE=4SV=1	REV__tr|A0A7D6VRW2|A0A7D6VRW2_9CLOTLactateutilizationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02585PE=4SV=1	MSMS	OvCa9_classI_Rep4_	4	507.8142395019531	2	507.813325	1013.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.643	1	95.264	94.764	95.764	-2.3786								0	0	0	0.019133	1	8655	8655		132.76	3.3366	1		+		35192	31450	28978	29005	38622	38622					0.10583486654184071
LSENIVIVK	9	Unmodified	_LSENIVIVK_					0	0	0			REV__tr|A0A7D6VRW2|A0A7D6VRW2_9CLOTLactateutilizationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02585PE=4SV=1	REV__tr|A0A7D6VRW2|A0A7D6VRW2_9CLOTLactateutilizationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02585PE=4SV=1	MSMS	OvCa9_classI_Rep4_	4	507.8143615722656	2	507.813325	1013.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.744	1	95.365	94.865	95.865	-2.3786								0	0	0	0.025443	1	8667	8667		124.08	11.973	1		+		35193	31450	28978	29005	38623	38623					0.10583486654184071
LSEPAPVPPI	10	Unmodified	_LSEPAPVPPI_					0	0	0		ENST00000465362.1_1_2:238005439-238006382:+|nuORF;nc|ENSG00000198612|Q99627-2|COPS8;ENSG00000198612|ENST00000354371|COPS8	ENST00000465362.1_1_2:238005439-238006382:+|nuORF	ENST00000465362.1_1_2:238005439-238006382:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	510.2928161621094	2	510.292225	1018.5699	-0.10295	-5.2533E-05	-0.35586	-0.00018159	-0.45881	-0.00023413	510.29192022253056	78.974	1.4952	76.634	76.264	77.759	-2.3399					95	29	5	0	0	0	0.45225	2	4243	4237;4243		60.972	7.3995	1	970550			35194	8835	28979	29006	38624;38625	38625					0.061355112458159056
LSEPEPDLN	9	Unmodified	_LSEPEPDLN_					0	0	0		ENST00000465699.5_3_6:30620572-30620689:+|nuORF;ENST00000488383.5_1_6:30618866-30620689:+|nuORF;nc|nan|Q5SQH8-2|C6orf136;nc|nan|Q5SQH8-3|C6orf136;nc|nan|Q5SQH8|C6orf136;ENSG00000204564|ENST00000651131|C6orf136	ENST00000465699.5_3_6:30620572-30620689:+|nuORF	ENST00000465699.5_3_6:30620572-30620689:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.7931213378906	2	507.242929	1012.47131	-0.64415	-0.00032674	-1.5312	-0.00077669	-2.1753	-0.0011034	507.2421107508351	43.427	0.46698	43.427	43.27	43.737	0					18	10	2	0	0	0	0.027433	1	2897	2897		45.972	5.1941	1	177620			35195	9002	28980	29007	38626	38626					-0.034431367899060206
LSEQAGSLVN	10	Unmodified	_LSEQAGSLVN_					0	0	0			REV__DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant	REV__DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.30694580078125	2	509.264196	1016.51384	0.070713	3.6012E-05	0.7011	0.00035704	0.77181	0.00039306	509.26431126696974	96.825	0.83453	95.867	95.58	96.414	-0.95856					28	16	2	0	0	0	0.026551	1	8723	8723		60.118	0	1	51347	+		35196	16314	28981	29008	38627	38627					0.006242583383254896
LSEQAGSLVN	10	Unmodified	_LSEQAGSLVN_					0	0	0			REV__DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant	REV__DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	509.264196	1016.51384	0.029674	1.5112E-05	1.0682	0.00054398	1.0978	0.00055909	509.26460050250313	98.137	0.85818	95.759	95.573	96.431	-2.3786	-0.11085	0.00027357	NaN	60.118	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67679	+		35197	16314	28981	29008							0.006242583383254896
LSEQLPTK	8	Unmodified	_LSEQLPTK_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.2311706542969	2	458.260925	914.507297	2.0022	0.00091751	0.10935	5.0112E-05	2.1115	0.00096762	458.26079791461774	77.567	0.92193	77.567	77.252	78.174	0					31	21	2	0	0	0	0.028476	1	7862	7862		27.882	1.1893	1	565600	+		35198	17252	28982	29009	38628	38628					0.04662365177603078
LSERAPTLL	9	Unmodified	_LSERAPTLL_					0	0	0			REV__ENST00000509525.5_1_5:132534789-132560973:-|nuORF	REV__ENST00000509525.5_1_5:132534789-132560973:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	500.2947082519531	2	500.295299	998.576045	0.69928	0.00034985	-1.1331	-0.00056686	-0.43378	-0.00021702	500.2946639686594	87.294	1.2874	85.863	85.438	86.726	-1.4311					65	24	4	0	0	0	0.33652	1	7609	7609		58.782	4.0056	1	359970	+		35199	16693	28983	29010	38629	38629					0.07670029477333173
LSERERDRKKW	11	Unmodified	_LSERERDRKKW_					0	0	0			REV__nc|ENSG00000168944|Q8N960-2|CEP120	REV__nc|ENSG00000168944|Q8N960-2|CEP120	MULTI-SECPEP	OvCa9_classI_Rep3	3	501.2858581542969	3	501.611063	1501.81136	-0.79693	-0.00039975	4.1789	0.0020962	3.382	0.0016965	501.94733096596565	81.378	0.65537	79.055	78.802	79.457	-2.3226					22	12	2	0	0	0	0.026383	1	4547	4547		8.7993	2.7983	1	81005	+		35200	21421	28984	29011	38630	38630					0.08052514934752253
LSERERDRKKW	11	Unmodified	_LSERERDRKKW_					0	0	0			REV__nc|ENSG00000168944|Q8N960-2|CEP120	REV__nc|ENSG00000168944|Q8N960-2|CEP120	MULTI-MATCH	OvCa9_classI_Rep2	2		3	501.611063	1501.81136	-0.19854	-9.9589E-05	3.6915	0.0018517	3.493	0.0017521	501.61270027694695	80.578	0.64998	78.883	78.668	79.318	-1.6951	0.031395	-0.00081463	NaN	12.957	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34105	+		35201	21421	28984	29011							0.08052514934752253
LSERERDRKKW	11	Unmodified	_LSERERDRKKW_					0	0	0			REV__nc|ENSG00000168944|Q8N960-2|CEP120	REV__nc|ENSG00000168944|Q8N960-2|CEP120	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	501.611063	1501.81136	-1.248	-0.000626	4.8109	0.0024132	3.5629	0.0017872	501.6134983001627	81.327	0.63618	78.616	78.445	79.081	-2.7106	-0.23539	0.00086993	NaN	12.957	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62775	+		35202	21421	28984	29011							0.08052514934752253
LSERGSCF	8	Unmodified	_LSERGSCF_					0	0	0		ENSG00000144035|ENST00000272425|NAT8	ENSG00000144035|ENST00000272425|NAT8	ENSG00000144035|ENST00000272425|NAT8	MULTI-MSMS	OvCa99_classI_Rep5	1	449.7056884765625	2	449.708002	897.401452	-0.0057334	-2.5783E-06	-3.6382	-0.0016361	-3.6439	-0.0016387	449.7063196448533	38.728	0.89035	38.728	38.486	39.376	0					39	19	4	0	0	0	0.65062	1	2228	2228		53.351	2.016	1	453330			35203	5123	28985	29012	38631	38631					-0.05135293939497387
LSERGSCF	8	Unmodified	_LSERGSCF_					0	0	0		ENSG00000144035|ENST00000272425|NAT8	ENSG00000144035|ENST00000272425|NAT8	ENSG00000144035|ENST00000272425|NAT8	MULTI-MSMS	OvCa99_classI_Rep5	1	449.7079772949219	2	449.708002	897.401452	0.5986	0.0002692	-4.0127	-0.0018045	-3.4141	-0.0015353	449.70605514355543	62.837	1.796	62.837	62.621	64.417	0					95	44	4	0	0	0	0.53531	2	5609	5609;5639		73.975	2.679	1	11564000			35204	5123	28985	29012	38632;38633	38632					-0.05135293939497387
LSESKNRLL	9	Unmodified	_LSESKNRLL_					0	0	0		ENST00000320220.13_2_13:21950789-21956053:-|nuORF;nc|ENSG00000180776|Q5W0Z9-3|ZDHHC20;ENSG00000180776|ENST00000400590|ZDHHC20	ENST00000320220.13_2_13:21950789-21956053:-|nuORF	ENST00000320220.13_2_13:21950789-21956053:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.3211059570312	2	530.31148	1058.60841	-0.40933	-0.00021707	0.21496	0.000114	-0.19437	-0.00010308	530.311457030732	38.064	1.0403	35.137	34.957	35.997	-2.9264					42	20	3	0	0	0	0.027461	1	1479	1479		58.782	14.251	1	58950			35205	7885	28986	29013	38634	38634					0.08144816880326289
LSEVMKLLK	9	Unmodified	_LSEVMKLLK_					0	0	0		ENSG00000131941|ENST00000254260|RHPN2;nc|ENSG00000131941|Q8IUC4-2|RHPN2;ENST00000592247.1_1_19:33470904-33481620:-|nuORF;ENST00000591502.1_1_19:33481365-33482797:-|nuORF;RHPN2-GRIN2D|1|fusion	ENSG00000131941|ENST00000254260|RHPN2;RHPN2-GRIN2D|1|fusion	RHPN2-GRIN2D|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	530.8247680664062	2	530.825378	1059.6362	0.1427	7.575E-05	-1.4032	-0.00074485	-1.2605	-0.0006691	530.824489955213	114.65	0.68415	114.65	114.15	114.84	0					30	14	3	0	0	0	0.35444	1	13086	13086		56.721	1.9447	1	601320			35206	32786;4099	28987	29014	38635	38635					0.10877003816199249
LSEYDMIVK	9	Oxidation (M)	_LSEYDM(Oxidation (M))IVK_		LSEYDM(1)IVK		LSEYDM(46)IVK	0	0	1			REV__ENST00000556754.1_1_14:20943209-20944757:+|nuORF	REV__ENST00000556754.1_1_14:20943209-20944757:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.2764282226562	2	557.278457	1112.54236	-1.5119	-0.00084257	0.53534	0.00029833	-0.9766	-0.00054424	557.2775555479442	125.75	1.3237	124.33	124.04	125.36	-1.4143					70	26	4	0	0	0	0.46377	1	11971	11971		45.952	8.7928	1	98782	+		35207	23067	28988	29015	38636	38636		537			-0.009407600767417534
LSEYLHCYHHH	11	Unmodified	_LSEYLHCYHHH_					0	0	0			REV__nc|ENSG00000162576|Q9BRK3-4|MXRA8	REV__nc|ENSG00000162576|Q9BRK3-4|MXRA8	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.7867126464844	3	480.215544	1437.6248	-0.5863	-0.00028155	-2.9005	-0.0013929	-3.4868	-0.0016744	480.21421020388885	77.358	1.0977	75.569	75.311	76.409	-1.7894					42	20	3	0	0	0	0.026189	1	6514	6514		20.03	6.5225	1	69865	+		35208	20747	28989	29016	38637	38637					-0.07650425225233448
LSFAEKFEA	9	Unmodified	_LSFAEKFEA_					0	0	0			REV__ENST00000597868.5_1_19:47104691-47111872:+|nuORF	REV__ENST00000597868.5_1_19:47104691-47111872:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	521.2683715820312	2	521.266207	1040.51786	0.73775	0.00038457	1.5276	0.00079629	2.2654	0.0011809	521.2668631277941	101.3	1.2294	101.3	101.06	102.29	0					71	28	4	0	0	0	0.027568	1	11255	11255		138.06	6.4462	1	3901100	+		35209	19876	28990	29017	38638	38638					-0.0007765216794268781
LSFDGKKL	8	Unmodified	_LSFDGKKL_					0	0	0			REV__ENSG00000130338|ENST00000367097|TULP4	REV__ENSG00000130338|ENST00000367097|TULP4	MULTI-MSMS	OvCa99_classI_Rep5	1	454.26708984375	2	454.26601	906.517468	3.2184	0.001462	-0.74282	-0.00033744	2.4756	0.0011246	454.2655671501196	102.36	1.1832	102.36	102.08	103.26	0					71	27	4	0	0	0	0.31378	1	11396	11396		104.75	3.4939	1	7944100	+		35210	18941	28991	29018	38639	38639					0.06046972902856851
LSFDGKKL	8	Unmodified	_LSFDGKKL_					0	0	0			REV__ENSG00000130338|ENST00000367097|TULP4	REV__ENSG00000130338|ENST00000367097|TULP4	MULTI-MSMS	OvCa9_classI_Rep2	2	454.2652893066406	2	454.26601	906.517468	0.67102	0.00030482	-0.67824	-0.0003081	-0.0072208	-3.2802E-06	454.26555939543033	102.96	2.0267	102.27	101.98	104.01	-0.68459					98	40	4	0	0	0	0.29515	2	9485	9485;9490		108.09	8.494	1	655790	+		35211	18941	28991	29018	38640;38641	38640					0.06046972902856851
LSFDGKKL	8	Unmodified	_LSFDGKKL_					0	0	0			REV__ENSG00000130338|ENST00000367097|TULP4	REV__ENSG00000130338|ENST00000367097|TULP4	MULTI-MSMS	OvCa9_classI_Rep3	3	454.2657775878906	2	454.26601	906.517468	0.33477	0.00015207	-0.632	-0.0002871	-0.29724	-0.00013503	454.26560945248633	103.8	2.0849	102.37	102.08	104.16	-1.4347					93	39	4	0	0	0	0.29515	6	7205	7200;7205;7211;7217;7224;7232		108.09	12.567	1	787310	+		35212	18941	28991	29018	38642;38643;38644;38645;38646;38647	38643					0.06046972902856851
LSFDGKKL	8	Unmodified	_LSFDGKKL_					0	0	0			REV__ENSG00000130338|ENST00000367097|TULP4	REV__ENSG00000130338|ENST00000367097|TULP4	MULTI-MSMS	OvCa9_classI_Rep4_	4	454.2657470703125	2	454.26601	906.517468	0.096914	4.4025E-05	-0.1218	-5.5332E-05	-0.02489	-1.1307E-05	454.2658073214655	104.47	1.8357	102.35	102.06	103.9	-2.1192					89	35	4	0	0	0	0.31378	5	9450	9450;9458;9470;9483;9504		104.75	13.97	1	709760	+		35213	18941	28991	29018	38648;38649;38650;38651;38652	38648					0.06046972902856851
LSFEQSVLKKK	11	Unmodified	_LSFEQSVLKKK_					0	0	0		ENST00000273038.7_1_3:11599800-11599995:-|nuORF	ENST00000273038.7_1_3:11599800-11599995:-|nuORF	ENST00000273038.7_1_3:11599800-11599995:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	436.2615966796875	3	436.262489	1305.76564	1.694	0.00073904	-4.1194	-0.0017972	-2.4254	-0.0010581	436.26077678089143	64.483	2.8395	61.49	61.14	63.98	-2.9933					174	55	5	0	0	0	0.72458	1	2592	2592		21.032	1.4053	1	3808000			35214	10004	28992	29019	38653	38653					0.12498476699806815
LSFFFMMFF	9	Unmodified	_LSFFFMMFF_					0	0	0		ENSG00000139974|ENST00000267488|SLC38A6;ENST00000529345.6_1_14:61448346-61550389:+|nuORF;nc|ENSG00000139974|Q8IZM9-2|SLC38A6;ENST00000527591.5_1_14:61453838-61514994:+|nuORF	ENSG00000139974|ENST00000267488|SLC38A6	ENSG00000139974|ENST00000267488|SLC38A6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	405.8679504394531	3	406.190508	1215.5497	1.6539	0.00067181	-1.3605	-0.00055262	0.29344	0.00011919	406.1896868032033	59.569	1.2826	56.177	55.604	56.886	-3.392					31	25	2	0	0	0	0.027462	1	3928	3928		26.693	0	1	19259			35215	4815	28993	29020	38654	38654					-0.049456990100225084
LSFFLAYVSIF	11	Unmodified	_LSFFLAYVSIF_					0	0	0		ENST00000464846.5_1_2:157435526-157439427:+|nuORF	ENST00000464846.5_1_2:157435526-157439427:+|nuORF	ENST00000464846.5_1_2:157435526-157439427:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.2410888671875	3	436.240914	1305.70091	0.22667	9.8884E-05	-0.083433	-3.6397E-05	0.14324	6.2487E-05	436.24089196043764	21.376	1.5844	20.038	19.646	21.231	-1.3386					77	31	3	0	0	0	0.72472	1	140	140		19.263	0.73163	1	808510			35216	12263	28994	29021	38655	38655					0.06028901893841976
LSFFVWAPV	9	Unmodified	_LSFFVWAPV_					0	0	0		ENST00000578921.5_1_18:9862152-9862215:+|nuORF	ENST00000578921.5_1_18:9862152-9862215:+|nuORF	ENST00000578921.5_1_18:9862152-9862215:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.7626342773438	2	533.292028	1064.5695	-2.4696	-0.001317	-1.1328	-0.0006041	-3.6024	-0.0019211	533.2909562366912	119.14	0.56374	117.79	117.52	118.09	-1.3444					16	10	2	0	0	0	0.027449	1	11146	11146		24.203	0	1	13964			35217	13975	28995	29022	38656	38656					0.03980136316590688
LSFGPLILR	9	Unmodified	_LSFGPLILR_					0	0	0			REV__ENST00000475815.5_1_2:36783274-36783475:-|nuORF	REV__ENST00000475815.5_1_2:36783274-36783475:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	508.321533203125	2	508.318577	1014.6226	1.3208	0.00067137	-0.8126	-0.00041306	0.50816	0.00025831	508.31794640443843	149.8	0.84294	149.8	149.4	150.24	0					32	16	3	0	0	0	0.38529	1	17530	17530		53.351	3.9099	1	90862	+		35218	26359	28996	29023	38657	38657					0.1158751409928982
LSFGSALSV	9	Unmodified	_LSFGSALSV_					0	0	0			REV__ENSG00000181656|ENST00000315033|GPR88	REV__ENSG00000181656|ENST00000315033|GPR88	MULTI-SECPEP	OvCa99_classI_Rep5	1	440.53509521484375	2	440.742368	879.470183	1.2823	0.00056517	-0.24505	-0.000108	1.0373	0.00045717	440.74154773156255	65.008	0.51566	65.008	64.793	65.309	0					19	12	2	0	0	0	0.027462	1	5975	5975		29.15	10.825	1	172970	+		35219	22243	28997	29024	38658	38658					0.02562693631853108
LSFHFLPS	8	Unmodified	_LSFHFLPS_					0	0	0		ENST00000597790.5_1_19:50879837-50880852:+|nuORF	ENST00000597790.5_1_19:50879837-50880852:+|nuORF	ENST00000597790.5_1_19:50879837-50880852:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.2931823730469	2	474.252903	946.491253	2.149	0.0010192	-4.2283	-0.0020053	-2.0793	-0.00098612	474.2507745602916	82.842	0.89732	82.842	82.479	83.377	0					49	20	3	0	0	0	0.028476	1	8557	8557		33.516	0	1	3081700			35220	14191	28998	29025	38659	38659					0.015867037313796573
LSFHRLLSL	9	Unmodified	_LSFHRLLSL_					0	0	0		ENST00000316407.8_2_3:113374227-113374296:-|nuORF	ENST00000316407.8_2_3:113374227-113374296:-|nuORF	ENST00000316407.8_2_3:113374227-113374296:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.7990112304688	2	543.326934	1084.63931	-0.51967	-0.00028235	-4.1585	-0.0022594	-4.6782	-0.0025418	543.3244569383747	75.184	1.4039	71.953	71.192	72.596	-3.2308					62	28	3	0	0	0	0.027459	1	5889	5889		44.377	3.599	1	300630			35221	10343	28999	29026	38660	38660					0.10038014985229893
LSFILKETL	9	Unmodified	_LSFILKETL_					0	0	0			REV__nc|ENSG00000071967|Q53TN4-3|CYBRD1	REV__nc|ENSG00000071967|Q53TN4-3|CYBRD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.810791015625	2	532.323525	1062.6325	2.0615	0.0010974	-0.055844	-2.9727E-05	2.0057	0.0010677	532.3234392388274	116.44	0.85477	116.44	116.19	117.04	0					27	18	2	0	0	0	0.027433	1	13299	13299		45.972	0	1	258050	+		35222	16906	29000	29027	38661	38661					0.10368657313983931
LSFKGAQG	8	Unmodified	_LSFKGAQG_					0	0	0			REV__nc|ENSG00000187848|Q9UBL9-7|P2RX2	REV__nc|ENSG00000187848|Q9UBL9-7|P2RX2	MULTI-MSMS	OvCa99_classI_Rep5	1	404.2231140136719	2	404.221603	806.428653	0.92077	0.0003722	0.43034	0.00017395	1.3511	0.00054615	404.2216917718074	69.525	0.77792	69.525	69.268	70.046	0					31	18	3	0	0	0	0.73626	1	6632	6632		33.516	3.0119	1	1188300	+		35223	22671	29001	29028	38662	38662					0.01769557663192245
LSFKRFML	8	Unmodified	_LSFKRFML_					0	0	0			REV__ENSG00000198286|ENST00000396946|CARD11	REV__ENSG00000198286|ENST00000396946|CARD11	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.2683715820312	2	521.29933	1040.58411	0.15598	8.1312E-05	-2.5935	-0.001352	-2.4375	-0.0012707	521.2980165960403	101.47	0.67476	101.47	101.23	101.91	0					22	15	2	0	0	0	0.028476	1	11255	11255		96.19	24.895	1	648020	+		35224	23007	29002	29029	38663	38663					0.0654388519310487
LSFLDYVL	8	Unmodified	_LSFLDYVL_					0	0	0			REV__nc|ENSG00000133687|Q8IUR5-1|TMTC1	REV__nc|ENSG00000133687|Q8IUR5-1|TMTC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.2671203613281	2	485.268219	968.521884	-1.2201	-0.00059209	-3.7819	-0.0018353	-5.0021	-0.0024274	485.2663430336786	72.332	2.0813	68.936	68.569	70.65	-3.3961					119	42	3	0	0	0	0.61758	1	5575	5575		60.294	3.5729	1	2530900	+		35225	19152	29003	29030	38664	38664					0.036364373257470106
LSFLYQLL	8	Unmodified	_LSFLYQLL_					0	0	0			REV__ENSG00000165406|ENST00000453424|MARCHF8	REV__ENSG00000165406|ENST00000453424|MARCHF8	MULTI-MSMS	OvCa9_classI_Rep2	2	498.7898864746094	2	498.791861	995.569169	-0.69611	-0.00034721	-3.8847	-0.0019376	-4.5808	-0.0022849	498.7898766980179	115.24	3.0674	115.12	114.7	117.77	-0.11777					207	61	7	0	0	0	0.42208	1	11049	11049		85.359	3.0545	1	2910400	+		35226	21085	29004	29031	38665	38665					0.07120716596762122
LSFPHLHLR	9	Unmodified	_LSFPHLHLR_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.P2471Lfs*35|1|0.08|ENSG00000118058|chr11:118503312-118503312|C/-|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-SECPEP	OvCa9_classI_Rep2	2	560.8033447265625	2	560.324725	1118.6349	0.96046	0.00053817	-3.112	-0.0017437	-2.1515	-0.0012056	560.824735742285	112.08	0.88795	111.96	111.73	112.62	-0.12174					27	17	2	0	0	0	0.027461	1	10632	10632		25.574	0	1	34156			35227	3286	29005	29032	38666	38666					0.08032550562302276
LSFPPASISLL	11	Unmodified	_LSFPPASISLL_					0	0	0			REV__HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|58|3|sense	REV__HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|58|3|sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	572.316162109375	2	572.834257	1143.65396	-1.3082	-0.00074936	-2.9465	-0.0016879	-4.2547	-0.0024372	572.8325700877657	96.526	1.4721	94.698	94.42	95.892	-1.8286					65	28	3	0	0	0	0.025824	1	6342	6342		51.193	0	1	1047500	+		35228	28252	29006	29033	38667	38667					0.08788042342712288
LSFPSGLAVV	10	Unmodified	_LSFPSGLAVV_					0	0	0			REV__ENSG00000169495|ENST00000302495|HTRA4	REV__ENSG00000169495|ENST00000302495|HTRA4	MULTI-MSMS	OvCa9_classI_Rep2	2	495.2864685058594	2	495.286943	988.559333	0.33859	0.0001677	-0.72846	-0.0003608	-0.38988	-0.0001931	495.28647269641976	109.21	1.5826	109.04	108.72	110.3	-0.17351					86	31	5	0	0	0	0.45225	2	10257	10257;10275		60.972	0	1	489630	+		35229	21465	29007	29034	38668;38669	38668					0.06459528591381059
LSFPSGLAVV	10	Unmodified	_LSFPSGLAVV_					0	0	0			REV__ENSG00000169495|ENST00000302495|HTRA4	REV__ENSG00000169495|ENST00000302495|HTRA4	MULTI-MSMS	OvCa9_classI_Rep3	3	495.2867431640625	2	495.286943	988.559333	0.072907	3.611E-05	-0.4151	-0.0002056	-0.3422	-0.00016949	495.28661892712034	110.12	1.7438	108.97	108.66	110.41	-1.1444					79	33	4	0	0	0	0.45225	3	7948	7948;7954;7968		60.972	0	1	451340	+		35230	21465	29007	29034	38670;38671;38672	38670					0.06459528591381059
LSFQTFEV	8	Unmodified	_LSFQTFEV_					0	0	0		ENSG00000038295|ENST00000061240|TLL1	ENSG00000038295|ENST00000061240|TLL1	ENSG00000038295|ENST00000061240|TLL1	MULTI-MSMS	OvCa99_classI_Rep5	1	485.7467956542969	2	485.74765	969.480748	-0.74976	-0.00036419	-3.6365	-0.0017664	-4.3862	-0.0021306	485.74586256325915	53.368	0.60508	53.368	53.087	53.692	0					17	13	2	0	0	0	0.53531	1	4238	4238		73.975	5.49	1	1879300			35231	1096	29008	29035	38673	38673					-0.005213237137013493
LSFQYMYN	8	Unmodified	_LSFQYMYN_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.8045654296875	2	533.239135	1064.46372	-0.3999	-0.00021324	-2.4907	-0.0013282	-2.8906	-0.0015414	533.2375749372717	54.207	0.8047	54.207	54.13	54.935	0					31	18	2	0	0	0	0.028476	1	4402	4402		79.451	38.673	1	278290	+		35232	22537	29009	29036	38674	38674					-0.06593567591175997
LSFRKKGLE	9	Unmodified	_LSFRKKGLE_					0	0	0		tr|A0A553SL57|A0A553SL57_NIACIPilusassemblyproteinPilZOS=NialliacirculansOX=1397GN=CEQ21_19980PE=4SV=1	tr|A0A553SL57|A0A553SL57_NIACIPilusassemblyproteinPilZOS=NialliacirculansOX=1397GN=CEQ21_19980PE=4SV=1	tr|A0A553SL57|A0A553SL57_NIACIPilusassemblyproteinPilZOS=NialliacirculansOX=1397GN=CEQ21_19980PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.78173828125	2	539.324391	1076.63423	-0.077625	-4.1865E-05	0.18923	0.00010206	0.11161	6.0192E-05	539.324405476203	105.05	0.52791	105.05	104.83	105.36	0					18	11	2	0	0	0	0.027462	1	11790	11790		15.642	0	1	298510			35233	33686	29010	29037	38675	38675					0.09897711122607689
LSFSLRTVF	9	Unmodified	_LSFSLRTVF_					0	0	0			REV__ENST00000495537.1_1_1:215792210-215792465:+|nuORF	REV__ENST00000495537.1_1_1:215792210-215792465:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	535.30712890625	2	535.305667	1068.59678	2.0884	0.0011179	-0.35082	-0.00018779	1.7376	0.00093014	535.3054063021825	108.47	1.0374	108.47	108.16	109.19	0					72	23	5	0	0	0	0.33652	1	12274	12274		58.782	3.2778	1	8228100	+		35234	26747	29011	29038	38676	38676					0.06522619856991696
LSFTSMGIN	9	Unmodified	_LSFTSMGIN_					0	0	0		ENST00000521682.5_1_8:144351612-144356933:+|nuORF;ENST00000519876.1_1_8:144351600-144355322:+|nuORF	ENST00000521682.5_1_8:144351612-144356933:+|nuORF	ENST00000521682.5_1_8:144351612-144356933:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.2669677734375	2	485.239135	968.463718	-1.2507	-0.0006069	-2.3286	-0.0011299	-3.5793	-0.0017368	485.2380164830064	72.394	0.48728	68.997	68.862	69.349	-3.3961					12	9	2	0	0	0	0.027418	1	5563	5563		82.241	27.464	1	31412			35235	13095	29012	29039	38677	38677					-0.021775675911726466
LSFTYSLV	8	Unmodified	_LSFTYSLV_					0	0	0		nc|ENSG00000142166|P17181-4|IFNAR1;nc|ENSG00000142166|P17181-3|IFNAR1;ENSG00000142166|ENST00000270139|IFNAR1;nc|ENSG00000142166|P17181-2|IFNAR1;IFNAR1|p.S422Lfs*20|1|0.22|ENSG00000142166|chr21:33352872-33352873|-/TT|frameshift_variant;IFNAR1|p.K417Rfs*25|1|0.04|ENSG00000142166|chr21:33352863-33352864|-/GG|frameshift_variant	nc|ENSG00000142166|P17181-4|IFNAR1	nc|ENSG00000142166|P17181-4|IFNAR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.27545166015625	2	465.252569	928.490584	-0.7748	-0.00036048	-2.102	-0.00097795	-2.8768	-0.0013384	465.25125261059435	63.874	0.71716	63.874	63.414	64.132	0					21	17	2	0	0	0	0.028476	1	5758	5758		33.516	0	1	311340			35236	4956	29013	29040	38678	38678					0.023478642916643366
LSFVDTRTL	9	Unmodified	_LSFVDTRTL_					0	0	0		COL1A2|p.G1105Lfs*36|1|0.03|ENSG00000164692|chr7:94427671-94427672|-/CT|frameshift_variant;COL1A2|p.G1111Yfs*17|1|0.05|ENSG00000164692|chr7:94427688-94427689|-/TTATACATACAATAAAATCTCC|frameshift_variant;ENSG00000164692|ENST00000297268|COL1A2	COL1A2|p.G1105Lfs*36|1|0.03|ENSG00000164692|chr7:94427671-94427672|-/CT|frameshift_variant;ENSG00000164692|ENST00000297268|COL1A2	COL1A2|p.G1105Lfs*36|1|0.03|ENSG00000164692|chr7:94427671-94427672|-/CT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	526.2921142578125	2	526.292756	1050.57096	-1.5504	-0.00081594	1.3388	0.00070459	-0.21159	-0.00011136	526.2933089016922	101.25	1.0863	99.641	99.043	100.13	-1.6053					56	20	4	0	0	0	0.020196	2	6907	6907;6912		146.79	24.609	1	384190			35237	594;6477	29014	29041	38679;38680	38679					0.04769725614710296
LSFVDTRTL	9	Unmodified	_LSFVDTRTL_					0	0	0		COL1A2|p.G1105Lfs*36|1|0.03|ENSG00000164692|chr7:94427671-94427672|-/CT|frameshift_variant;COL1A2|p.G1111Yfs*17|1|0.05|ENSG00000164692|chr7:94427688-94427689|-/TTATACATACAATAAAATCTCC|frameshift_variant;ENSG00000164692|ENST00000297268|COL1A2	COL1A2|p.G1105Lfs*36|1|0.03|ENSG00000164692|chr7:94427671-94427672|-/CT|frameshift_variant;ENSG00000164692|ENST00000297268|COL1A2	COL1A2|p.G1105Lfs*36|1|0.03|ENSG00000164692|chr7:94427671-94427672|-/CT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.2938842773438	2	526.292756	1050.57096	-0.96498	-0.00050786	0.4549	0.00023941	-0.51008	-0.00026845	526.2928269754557	101.8	1.1593	99.531	98.974	100.13	-2.2665					54	22	3	0	0	0	0.011767	2	9158	9148;9158		163.15	28.34	1	384050			35238	594;6477	29014	29041	38681;38682	38682					0.04769725614710296
LSFVDTRTLL	10	Unmodified	_LSFVDTRTLL_					0	0	0		COL1A2|p.G1105Lfs*36|1|0.03|ENSG00000164692|chr7:94427671-94427672|-/CT|frameshift_variant;COL1A2|p.G1111Yfs*17|1|0.05|ENSG00000164692|chr7:94427688-94427689|-/TTATACATACAATAAAATCTCC|frameshift_variant;ENSG00000164692|ENST00000297268|COL1A2	COL1A2|p.G1105Lfs*36|1|0.03|ENSG00000164692|chr7:94427671-94427672|-/CT|frameshift_variant;ENSG00000164692|ENST00000297268|COL1A2	COL1A2|p.G1105Lfs*36|1|0.03|ENSG00000164692|chr7:94427671-94427672|-/CT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	582.8342895507812	2	582.834788	1163.65502	-0.78135	-0.0004554	0.60154	0.0003506	-0.17981	-0.0001048	582.8349775813373	121.7	1.0886	121.5	121.2	122.29	-0.19718					47	21	3	0	0	0	0.47131	2	11760	11760;11765		58.246	8.7102	1	119850			35239	594;6477	29015	29042	38683;38684	38683					0.07974256711622729
LSFVDTRTLL	10	Unmodified	_LSFVDTRTLL_					0	0	0		COL1A2|p.G1105Lfs*36|1|0.03|ENSG00000164692|chr7:94427671-94427672|-/CT|frameshift_variant;COL1A2|p.G1111Yfs*17|1|0.05|ENSG00000164692|chr7:94427688-94427689|-/TTATACATACAATAAAATCTCC|frameshift_variant;ENSG00000164692|ENST00000297268|COL1A2	COL1A2|p.G1105Lfs*36|1|0.03|ENSG00000164692|chr7:94427671-94427672|-/CT|frameshift_variant;ENSG00000164692|ENST00000297268|COL1A2	COL1A2|p.G1105Lfs*36|1|0.03|ENSG00000164692|chr7:94427671-94427672|-/CT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	582.8334350585938	2	582.834788	1163.65502	0.14803	8.6279E-05	-0.42718	-0.00024898	-0.27915	-0.0001627	582.8345306247196	122.41	1.2592	121.38	120.9	122.16	-1.0286					63	23	4	0	0	0	0.16967	3	9404	9404;9409;9416		99.013	28.197	1	186790			35240	594;6477	29015	29042	38685;38686;38687	38685					0.07974256711622729
LSFVDTRTLL	10	Unmodified	_LSFVDTRTLL_					0	0	0		COL1A2|p.G1105Lfs*36|1|0.03|ENSG00000164692|chr7:94427671-94427672|-/CT|frameshift_variant;COL1A2|p.G1111Yfs*17|1|0.05|ENSG00000164692|chr7:94427688-94427689|-/TTATACATACAATAAAATCTCC|frameshift_variant;ENSG00000164692|ENST00000297268|COL1A2	COL1A2|p.G1105Lfs*36|1|0.03|ENSG00000164692|chr7:94427671-94427672|-/CT|frameshift_variant;ENSG00000164692|ENST00000297268|COL1A2	COL1A2|p.G1105Lfs*36|1|0.03|ENSG00000164692|chr7:94427671-94427672|-/CT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	582.833740234375	2	582.834788	1163.65502	-0.38981	-0.00022719	0.28134	0.00016397	-0.10847	-6.3221E-05	582.8347234673496	122.7	1.1897	121.34	121.06	122.25	-1.3666					58	23	3	0	0	0	0.15355	3	11599	11587;11599;11614		101.46	28.581	1	176760			35241	594;6477	29015	29042	38688;38689;38690	38689					0.07974256711622729
LSFVVSFES	9	Unmodified	_LSFVVSFES_					0	0	0			REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7628479003906	2	507.760758	1013.50696	0.48572	0.00024663	3.4576	0.0017556	3.9433	0.0020022	507.76242082287587	126.44	3.901	126.2	123.43	127.33	-0.2359					157	78	4	0	0	0	0.40667	1	12373	12373		51.335	7.7094	1	953460	+		35242	19033	29016	29043	38691	38691					0.0007494545776580708
LSFWELIP	8	Unmodified	_LSFWELIP_					0	0	0		ENSG00000185608|ENST00000333130|MRPL40;chr22:19433348-19434741|128|22.88|0.93|4.63|+|1|MRPL40,None|1	ENSG00000185608|ENST00000333130|MRPL40	ENSG00000185608|ENST00000333130|MRPL40	MULTI-SECPEP	OvCa9_classI_Rep2	2	503.7628479003906	2	502.776211	1003.53787	-0.49552	-0.00024914	-2.8361	-0.0014259	-3.3316	-0.001675	502.7768672281529	93.287	0.25533	92.119	91.953	92.209	-1.168					7	4	2	0	0	0	0.028476	1	8315	8315		40.573	0	1	5642.4			35243	8265	29017	29044	38692	38692					0.0362414356266072
LSFWSFVTF	9	Unmodified	_LSFWSFVTF_					0	0	0			REV__ENST00000527249.5_1_11:65769381-65769534:-|nuORF	REV__ENST00000527249.5_1_11:65769381-65769534:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	566.817626953125	2	567.286943	1132.55933	-0.85107	-0.0004828	0.77032	0.00043699	-0.080744	-4.5805E-05	567.2870449230495	87.668	1.081	85.492	85.087	86.168	-2.1768					48	20	3	0	0	0	0.027462	1	5282	5282		29.15	0	1	96411	+		35244	24355	29018	29045	38693	38693					-0.001644714086296517
LSFYLPVELRI	11	Unmodified	_LSFYLPVELRI_					0	0	0			REV__ENST00000449808.1_1_3:25832170-25832296:+|nuORF	REV__ENST00000449808.1_1_3:25832170-25832296:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	450.5980224609375	3	450.599101	1348.77547	-0.36922	-0.00016637	-2.0309	-0.00091514	-2.4002	-0.0010815	450.5981883929496	75.04	3.3509	72.629	71.944	75.295	-2.4106					204	65	5	0	0	0	0.46188	2	3740	3740;3788		56.632	10.724	1	1091400	+		35245	25953	29019	29046	38694;38695	38694					0.11503664705219308
LSFYQRRRFSP	11	Unmodified	_LSFYQRRRFSP_					0	0	0		TG|p.S2274Lfs*71|1|0.03|ENSG00000042832|chr8:133019639-133019640|-/TG|frameshift_variant;nc|ENSG00000042832|P01266-2|TG;ENSG00000042832|ENST00000220616|TG;TG|p.Q1926Sfs*11|1|0.04|ENSG00000042832|chr8:132967881-132967896|CACAGGTGTGTGATGA/-|frameshift_variant	TG|p.S2274Lfs*71|1|0.03|ENSG00000042832|chr8:133019639-133019640|-/TG|frameshift_variant	TG|p.S2274Lfs*71|1|0.03|ENSG00000042832|chr8:133019639-133019640|-/TG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	486.2630920410156	3	486.265115	1455.77352	-0.63684	-0.00030967	-2.6448	-0.0012861	-3.2816	-0.0015957	486.26373434904593	48.313	1.292	45.604	45.331	46.623	-2.7097					68	25	3	0	0	0	0.72472	1	2995	2995		19.263	3.342	1	298430			35246	1127	29020	29047	38696	38696					0.06386048739955186
LSFYSNPTI	9	Unmodified	_LSFYSNPTI_					0	0	0			REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10	REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10	MULTI-MSMS	OvCa99_classI_Rep5	1	521.2744750976562	2	521.266207	1040.51786	0.73775	0.00038457	1.5276	0.00079629	2.2654	0.0011809	521.2668631277941	101.3	1.2294	101.3	101.06	102.29	0					71	28	4	0	0	0	0.12515	1	11293	11293		90.37	0	1	3901100	+		35247	19554	29021	29048	38697	38697					-0.0007765216794268781
LSGEKESVK	9	Unmodified	_LSGEKESVK_					0	0	0			REV__ENST00000504572.5_1_5:142780406-142814232:-|nuORF	REV__ENST00000504572.5_1_5:142780406-142814232:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.77215576171875	2	488.769114	975.523675	0.071319	3.4859E-05	-0.026847	-1.3122E-05	0.044473	2.1737E-05	488.769001951179	56.26	1.4691	52.966	52.668	54.137	-3.2944					64	28	3	0	0	0	0.064985	1	3598	3598		110.12	8.8673	1	413180	+		35248	26860	29022	29049	38698	38698					0.034934463437252816
LSGEKESVK	9	Unmodified	_LSGEKESVK_					0	0	0			REV__ENST00000504572.5_1_5:142780406-142814232:-|nuORF	REV__ENST00000504572.5_1_5:142780406-142814232:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	488.769114	975.523675	0.050145	2.4509E-05	-0.31976	-0.00015629	-0.26962	-0.00013178	488.768993048959	52.791	0.74018	52.791	52.259	52.999	0	-0.17793	-0.00034102	NaN	110.12	19	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	408710	+		35249	26860	29022	29049							0.034934463437252816
LSGEKESVK	9	Unmodified	_LSGEKESVK_					0	0	0			REV__ENST00000504572.5_1_5:142780406-142814232:-|nuORF	REV__ENST00000504572.5_1_5:142780406-142814232:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	488.769114	975.523675	-0.56794	-0.00027759	0.72606	0.00035487	0.15812	7.7283E-05	488.76928337838336	55.955	1.4877	53.151	52.382	53.87	-2.804	0.18149	0.00068131	NaN	110.12	57	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73481	+		35250	26860	29022	29049							0.034934463437252816
LSGEKESVK	9	Unmodified	_LSGEKESVK_					0	0	0			REV__ENST00000504572.5_1_5:142780406-142814232:-|nuORF	REV__ENST00000504572.5_1_5:142780406-142814232:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	488.769114	975.523675	0.071319	3.4859E-05	-0.026847	-1.3122E-05	0.044473	2.1737E-05	488.769001951179	56.26	1.4691	52.966	52.668	54.137	-3.2944	-0.0035528	-5.4677E-05	NaN	110.12	64	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	413180	+		35251	26860	29022	29049							0.034934463437252816
LSGEKQRI	8	Unmodified	_LSGEKQRI_					0	0	0		ENSG00000013016|ENST00000322054|EHD3;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENST00000569223.1_1_15:42235208-42264692:-|nuORF;ENSG00000103966|ENST00000220325|EHD4;EHD4|p.A361Rfs*7|1|0.08|ENSG00000103966|chr15:41909707-41909708|-/G|frameshift_variant	ENSG00000013016|ENST00000322054|EHD3;ENSG00000103966|ENST00000220325|EHD4	ENSG00000013016|ENST00000322054|EHD3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.2649841308594	2	465.771991	929.529429	0.23236	0.00010822	-2.213	-0.0010308	-1.9806	-0.00092253	465.7704484838365	60.599	0.84312	57.169	56.601	57.444	-3.43					21	16	2	0	0	0	0.028476	1	4063	4063		60.972	5.4677	1	52740			35252	979;2345	29023	29050	38699	38699					0.06184589646045424
LSGEKQRI	8	Unmodified	_LSGEKQRI_					0	0	0		ENSG00000013016|ENST00000322054|EHD3;nc|ENSG00000013016|Q9NZN3-2|EHD3;ENST00000569223.1_1_15:42235208-42264692:-|nuORF;ENSG00000103966|ENST00000220325|EHD4;EHD4|p.A361Rfs*7|1|0.08|ENSG00000103966|chr15:41909707-41909708|-/G|frameshift_variant	ENSG00000013016|ENST00000322054|EHD3;ENSG00000103966|ENST00000220325|EHD4	ENSG00000013016|ENST00000322054|EHD3	MULTI-MATCH	OvCa99_classI_Rep5	1		2	465.771991	929.529429	0.039468	1.8383E-05	4.0763	0.0018986	4.1158	0.001917	465.77373673704847	56.811	0.68593	56.811	56.623	57.309	0	-0.17881	0.00062625	NaN	60.972	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	374530			35253	979;2345	29023	29050							0.06184589646045424
LSGESDVNKL	10	Unmodified	_LSGESDVNKL_					0	0	0			REV__ENSG00000054690|ENST00000329153|PLEKHH1	REV__ENSG00000054690|ENST00000329153|PLEKHH1	MULTI-MSMS	OvCa99_classI_Rep5	1	531.27685546875	2	531.277303	1060.54005	-0.31503	-0.00016737	-0.16762	-8.9053E-05	-0.48265	-0.00025642	531.2774782618208	35.834	0.73603	35.834	35.475	36.211	0					33	15	3	0	0	0	0.36605	1	1844	1844		72.879	14.097	1	271580	+		35254	16702	29024	29051	38700	38700					0.012205275098040147
LSGESDVNKL	10	Unmodified	_LSGESDVNKL_					0	0	0			REV__ENSG00000054690|ENST00000329153|PLEKHH1	REV__ENSG00000054690|ENST00000329153|PLEKHH1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	531.277303	1060.54005	-2.1533	-0.001144	3.1254	0.0016605	0.97212	0.00051647	531.2792303380712	38.612	0.49374	35.902	35.717	36.211	-2.7097	0.034249	0.0025644	NaN	72.879	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17594	+		35255	16702	29024	29051							0.012205275098040147
LSGFTCQCP	9	Unmodified	_LSGFTCQCP_					0	0	0		ENSG00000187957|ENST00000341772|DNER	ENSG00000187957|ENST00000341772|DNER	ENSG00000187957|ENST00000341772|DNER	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.93609619140625	2	478.204238	954.393924	-0.78023	-0.00037311	0.73282	0.00035044	-0.047419	-2.2676E-05	478.20440534796586	71.699	1.1229	68.243	67.924	69.047	-3.4563					55	22	4	0	0	0	0.027433	1	5449	5449		42.396	21.449	1	313860			35256	8444	29025	29052	38701	38701					-0.0850976953144027
LSGFYVISE	9	Unmodified	_LSGFYVISE_					0	0	0			REV__tr|A0A553SFL5|A0A553SFL5_NIACICYTHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09000PE=4SV=1	REV__tr|A0A553SFL5|A0A553SFL5_NIACICYTHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09000PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7616882324219	2	507.760758	1013.50696	0.48572	0.00024663	3.4576	0.0017556	3.9433	0.0020022	507.76242082287587	126.44	3.901	126.2	123.43	127.33	-0.2359					157	78	4	0	0	0	0.22961	1	12340	12340		71.296	0	1	953460	+		35257	29591	29026	29053	38702	38702					0.0007494545776580708
LSGGKGGA	8	Unmodified	_LSGGKGGA_					0	0	0			REV__ENSG00000132470|ENST00000200181|ITGB4	REV__ENSG00000132470|ENST00000200181|ITGB4	MULTI-SECPEP	OvCa99_classI_Rep5	1	646.3147583007812	1	646.351865	645.344589	2.1731	0.0014046	-2.8776	-0.00186	-0.70454	-0.00045538	646.3496287036286	102.98	0.2487	102.98	102.85	103.1	0					7	5	2	0	0	0	0.028476	1	11500	11500		1.4648	0.13718	1	121700	+		35258	19082	29027	29054	38703	38703					0.007730265662871716
LSGGRRMTK	9	Unmodified	_LSGGRRMTK_					0	0	0		ENSG00000117115|ENST00000375486|PADI2;ENST00000466151.1_1_1:17402167-17409162:-|nuORF	ENSG00000117115|ENST00000375486|PADI2	ENSG00000117115|ENST00000375486|PADI2	MULTI-MSMS	OvCa9_classI_Rep2	2	503.28277587890625	2	503.284743	1004.55493	-2.3544	-0.0011849	-1.5876	-0.000799	-3.942	-0.0019839	503.2837317952752	37.887	0.88826	35.178	34.977	35.865	-2.7097					37	17	3	0	0	0	0.38969	1	1746	1746		52.937	8.5595	1	84026			35259	3235	29028	29055	38704	38704					0.052837408968116506
LSGICAQIIP	10	Unmodified	_LSGICAQIIP_					0	0	0		nc|ENSG00000065717|Q04725-2|TLE2;nc|ENSG00000065717|Q04725-3|TLE2;ENSG00000065717|ENST00000262953|TLE2	nc|ENSG00000065717|Q04725-2|TLE2	nc|ENSG00000065717|Q04725-2|TLE2	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.267578125	2	507.786253	1013.55795	-1.4007	-0.00071125	2.225	0.0011298	0.8243	0.00041857	507.78594197718087	87.049	1.7253	84.872	83.929	85.654	-2.1768					51	33	3	0	0	0	0.02658	1	5279	5279		54.776	8.8244	1	242160			35260	1336	29029	29056	38705	38705					0.05171571230960126
LSGIFGGR	8	Unmodified	_LSGIFGGR_					0	0	0		tr|A0A7D6VTB0|A0A7D6VTB0_9CLOTGTP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07240PE=4SV=1	tr|A0A7D6VTB0|A0A7D6VTB0_9CLOTGTP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07240PE=4SV=1	tr|A0A7D6VTB0|A0A7D6VTB0_9CLOTGTP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07240PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.186767578125	2	403.729595	805.444637	1.0178	0.00041092	-0.55048	-0.00022224	0.46734	0.00018868	403.7292436519069	40.699	0.85443	40.699	40.34	41.195	0					38	18	3	0	0	0	0.028476	1	2537	2537		7.1934	0	1	1391600			35261	35102	29030	29057	38706	38706					0.03413263900097263
LSGKHTGPLV	10	Unmodified	_LSGKHTGPLV_					0	0	0			REV__nc|ENSG00000107537|O14832-2|PHYH	REV__nc|ENSG00000107537|O14832-2|PHYH	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.33026123046875	2	504.795466	1007.57638	-1.6642	-0.00084009	0.90079	0.00045471	-0.76344	-0.00038538	504.7954095443693	72.529	1.504	69.133	68.813	70.317	-3.3961					60	30	3	0	0	0	0.026659	1	5631	5631		37.812	8.662	1	187290	+		35262	17849	29031	29058	38707	38707					0.07289449197173781
LSGKLRSLIP	10	Unmodified	_LSGKLRSLIP_					0	0	0			REV__ENST00000528377.1_1_11:67375903-67377304:+|nuORF	REV__ENST00000528377.1_1_11:67375903-67377304:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.7816162109375	2	542.347866	1082.68118	1.2575	0.00068198	1.9788	0.0010732	3.2363	0.0017552	542.3485365834732	149.9	0.34979	149.9	149.7	150.05	0					9	6	2	0	0	0	0.027147	1	17560	17560		5.9211	0	1	22220	+		35263	27168	29032	29059	38708	38708					0.14314570673764138
LSGLRAPPLL	10	Unmodified	_LSGLRAPPLL_					0	0	0		ENST00000340491.8_1_20:35090648-35090810:+|nuORF	ENST00000340491.8_1_20:35090648-35090810:+|nuORF	ENST00000340491.8_1_20:35090648-35090810:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	518.8281860351562	2	518.829309	1035.64407	1.7024	0.00088324	-2.0698	-0.0010739	-0.36745	-0.00019064	518.8281964515016	122.5	2.5536	121.47	120.64	123.19	-1.0286					133	48	4	0	0	0	0.46756	1	9442	9442		58.782	0	1	994930			35264	10560	29033	29060	38709	38709					0.12766899127996112
LSGLSACHL	9	Carbamidomethyl (C)	_LSGLSAC(Carbamidomethyl (C))HL_	LSGLSAC(1)HL		LSGLSAC(66)HL		0	1	0			REV__ENST00000483792.1_1_6:31695419-31697893:-|nuORF	REV__ENST00000483792.1_1_6:31695419-31697893:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	479.2430725097656	2	479.244752	956.474951	-0.28231	-0.0001353	-3.5409	-0.001697	-3.8232	-0.0018323	479.2429250313734	47.964	0.77449	47.964	47.681	48.455	0					44	17	4	0	0	0	0.27546	1	3502	3502		65.803	7.0212	1	4004000	+		35265	26539	29034	29061	38710	38710	328				-0.005027454970331746
LSGLVEKK	8	Unmodified	_LSGLVEKK_					0	0	0			REV__ENST00000488700.5_1_10:97892409-97893363:+|nuORF	REV__ENST00000488700.5_1_10:97892409-97893363:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	437.2611389160156	2	437.273835	872.533118	-1.2232	-0.00053488	1.5459	0.00067597	0.32268	0.0001411	437.2746943769635	50.404	0.41724	47.262	47.026	47.444	-3.1416					11	7	2	0	0	0	0.028476	1	2917	2917		76.847	8.3619	1	23586	+		35266	26626	29035	29062	38711	38711					0.0917525941989652
LSGNQLEKEL	10	Unmodified	_LSGNQLEKEL_					0	0	0			REV__ENSG00000108839|ENST00000251535|ALOX12	REV__ENSG00000108839|ENST00000251535|ALOX12	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.807373046875	2	565.806228	1129.5979	-0.13067	-7.3931E-05	1.6594	0.00093892	1.5288	0.00086499	565.8063179682138	45.408	1.7666	42.369	41.613	43.38	-3.0385					105	33	4	0	0	0	0.52439	1	2330	2330		51.193	6.6616	1	613130	+		35267	17906	29036	29063	38712	38712					0.038287894352379226
LSGNQLEKEL	10	Unmodified	_LSGNQLEKEL_					0	0	0			REV__ENSG00000108839|ENST00000251535|ALOX12	REV__ENSG00000108839|ENST00000251535|ALOX12	MULTI-MATCH	OvCa9_classI_Rep2	2		2	565.806228	1129.5979	-0.043491	-2.4608E-05	2.2792	0.0012896	2.2357	0.001265	565.8064771306557	45.146	1.2001	42.436	42	43.2	-2.7097	0.033373	0.00033116	NaN	51.193	57	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144320	+		35268	17906	29036	29063							0.038287894352379226
LSGPGLGQGSP	11	Unmodified	_LSGPGLGQGSP_					0	0	0			REV__ENST00000314100.10_1_6:38137080-38137401:-|nuORF	REV__ENST00000314100.10_1_6:38137080-38137401:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.84368896484375	2	485.253631	968.49271	0.60521	0.00029368	-0.85847	-0.00041657	-0.25325	-0.00012289	485.2529103294697	67.129	0.58965	67.129	66.939	67.528	0					29	14	3	0	0	0	0.025529	1	6236	6236		41.427	0	1	1825500	+		35269	24379	29037	29064	38713	38713					0.0072029302948521945
LSGRQGPMPV	10	Unmodified	_LSGRQGPMPV_					0	0	0		LRP4|p.S1504Lfs*116|1|0.16|ENSG00000134569|chr11:46873172-46873172|G/-|frameshift_variant	LRP4|p.S1504Lfs*116|1|0.16|ENSG00000134569|chr11:46873172-46873172|G/-|frameshift_variant	LRP4|p.S1504Lfs*116|1|0.16|ENSG00000134569|chr11:46873172-46873172|G/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.2609252929688	2	521.279126	1040.5437	0.070032	3.6506E-05	-3.2446	-0.0016914	-3.1746	-0.0016549	521.2774852124311	140.91	0.35039	140.91	140.73	141.08	0					9	6	2	0	0	0	0.026802	1	16460	16460		42.396	0	1	19338			35270	14802	29038	29065	38714	38714					0.02504918802674183
LSGRRPGVLV	10	Unmodified	_LSGRRPGVLV_					0	0	0			REV__ENST00000397901.7_1_16:89711018-89711168:-|nuORF	REV__ENST00000397901.7_1_16:89711018-89711168:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.3118896484375	2	527.330008	1052.64546	0.05795	3.0559E-05	-3.2434	-0.0017104	-3.1855	-0.0016798	527.3302438316704	45.319	0.47358	45.319	45.023	45.496	0					14	10	2	0	0	0	0.027056	1	3100	3100		20.947	7.9877	1	39961	+		35271	25365	29039	29066	38715	38715					0.12124533216751843
LSGSDVLD	8	Unmodified	_LSGSDVLD_					0	0	0		nc|ENSG00000051180|Q06609-2|RAD51;nc|ENSG00000051180|Q06609-3|RAD51;ENSG00000051180|ENST00000267868|RAD51;nc|ENSG00000051180|Q06609-4|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	nc|ENSG00000051180|Q06609-2|RAD51	MULTI-SECPEP	OvCa99_classI_Rep5	1	403.566650390625	2	403.200533	804.386513	0.82204	0.00033145	-0.099724	-4.0209E-05	0.72231	0.00029124	403.2004014746624	33.705	0.2407	33.705	33.632	33.873	0					5	4	2	0	0	0	0.028476	1	1574	1574		23.042	0	1	17965			35272	1185	29040	29067	38716	38716					-0.023504625358441444
LSGSFIERERK	11	Unmodified	_LSGSFIERERK_					0	0	0			REV__ENSG00000080200|ENST00000389622|CRYBG3	REV__ENSG00000080200|ENST00000389622|CRYBG3	MULTI-SECPEP	OvCa9_classI_Rep2	2	442.2351379394531	3	441.245609	1320.715	0.17207	7.5927E-05	2.3716	0.0010464	2.5436	0.0011224	441.2463136858019	53.55	0.94554	50.736	50.429	51.375	-2.8139					37	18	3	0	0	0	0.025508	1	3622	3622		34.087	0	1	23656	+		35273	17051	29041	29068	38717	38717					0.06746947374858792
LSGSLDYNV	9	Unmodified	_LSGSLDYNV_					0	0	0		ENSG00000176853|ENST00000334705|FAM91A1;ENST00000446265.3_1:149647111-149647681:+|nuORF	ENSG00000176853|ENST00000334705|FAM91A1	ENSG00000176853|ENST00000334705|FAM91A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.28643798828125	2	484.24019	966.465826	2.0601	0.00099758	3.6315	0.0017585	5.6916	0.0027561	484.24177388787416	100.29	0.54834	100.29	99.939	100.49	0					19	12	2	0	0	0	0.027441	1	11102	11102		40.778	1.5253	1	137600			35274	7630	29042	29069	38718	38718					-0.018748155817092993
LSGSRFSK	8	Unmodified	_LSGSRFSK_					0	0	0			REV__ENSG00000125245|ENST00000397470|GPR18	REV__ENSG00000125245|ENST00000397470|GPR18	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.236572265625	2	441.245609	880.476666	-0.85624	-0.00037781	1.1535	0.00050897	0.29724	0.00013115	441.2459884249985	52.906	1.1566	49.698	49.298	50.454	-3.208					39	22	2	0	0	0	0.028476	1	3278	3278		34.173	0	1	98835	+		35275	18714	29043	29070	38719	38719					0.03164631583240407
LSGSRQDL	8	Unmodified	_LSGSRQDL_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	438.2506103515625	2	438.232699	874.450845	-0.52943	-0.00023202	3.2886	0.0014412	2.7592	0.0012092	438.2343141289737	40.56	0.21085	37.606	37.421	37.632	-2.9541					5	3	2	0	0	0	0.028476	1	1742	1742		35.618	0	1	11501			35276	8760	29044	29071	38720	38720					0.008597373409543252
LSGSVSRFT	9	Unmodified	_LSGSVSRFT_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.93609619140625	2	477.256174	952.497795	-0.54137	-0.00025837	1.8266	0.00087173	1.2852	0.00061336	477.2562233924983	71.36	0.68942	67.903	67.58	68.27	-3.4563					18	13	2	0	0	0	0.027417	1	5449	5449		45.952	10.334	1	21168	+		35277	22747	29045	29072	38721	38721					0.019645968920940504
LSGTSDAKPN	10	Unmodified	_LSGTSDAKPN_					0	0	0			REV__ENST00000491238.5_1_3:71161735-71179856:-|nuORF	REV__ENST00000491238.5_1_3:71161735-71179856:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.2474060058594	2	495.248546	988.482539	-0.63667	-0.00031531	0.23687	0.00011731	-0.3998	-0.000198	495.24855946934025	124.08	1.1711	122.69	122.42	123.59	-1.3908					49	22	3	0	0	0	0.59317	1	11751	11751		42.864	2.0861	1	110610	+		35278	26670	29046	29073	38722	38722					-0.012163146957732351
LSGTWAEQVPT	11	Unmodified	_LSGTWAEQVPT_					0	0	0		ENST00000267889.4_2_15:40659461-40659527:+|nuORF	ENST00000267889.4_2_15:40659461-40659527:+|nuORF	ENST00000267889.4_2_15:40659461-40659527:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	594.8004760742188	2	594.798403	1187.58225	1.352	0.00080415	1.9443	0.0011565	3.2963	0.0019606	594.7994258170389	128.98	1.7805	127.53	127.2	128.98	-1.4565					105	35	5	0	0	0	0.59615	1	12415	12415		45.022	5.7694	1	471240			35279	9969	29047	29074	38723	38723					-0.004034970818338479
LSGVCTSNYT	10	Unmodified	_LSGVCTSNYT_					0	0	0			REV__ENSG00000188596|ENST00000524981|CFAP54	REV__ENSG00000188596|ENST00000524981|CFAP54	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.814453125	2	522.736957	1043.45936	1.0941	0.00057192	-3.1705	-0.0016573	-2.0764	-0.0010854	522.7336765596463	107.15	0.29926	107.15	106.93	107.23	0					10	6	3	0	0	0	0.027174	1	12070	12070		20.947	2.6225	1	206440	+		35280	22722	29048	29075	38724	38724					-0.06063076804730372
LSGYVVATPL	10	Unmodified	_LSGYVVATPL_					0	0	0			REV__ENSG00000138111|ENST00000238936|MFSD13A	REV__ENSG00000138111|ENST00000238936|MFSD13A	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.29327392578125	2	510.292225	1018.5699	-0.60264	-0.00030752	-0.22965	-0.00011719	-0.83229	-0.00042471	510.2919760033697	79.571	1.3508	76.82	76.514	77.865	-2.7514					83	27	5	0	0	0	0.59703	1	6496	6496		42.396	5.237	1	972660	+		35281	19511	29049	29076	38725	38725					0.061355112458159056
LSHFFYIQLL	10	Unmodified	_LSHFFYIQLL_					0	0	0			REV__ENSG00000197403|ENST00000641846|OR6N1	REV__ENSG00000197403|ENST00000641846|OR6N1	MULTI-SECPEP	OvCa9_classI_Rep2	2	427.2541198730469	3	427.572775	1279.69649	-1.6553	-0.00070778	-3.9445	-0.0016866	-5.5999	-0.0023944	427.5711124649981	38.486	0.64245	35.776	35.469	36.112	-2.7097					22	12	2	0	0	0	0.027001	1	1835	1835		28.081	5.5199	1	18982	+		35282	22917	29050	29077	38726	38726					0.06783437470949139
LSHFVPSLV	9	Unmodified	_LSHFVPSLV_					0	0	0		HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|131|3|sense	HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|131|3|sense	HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|131|3|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.7876281738281	2	499.78711	997.559667	-1.634	-0.00081666	-1.593	-0.00079617	-3.227	-0.0016128	499.78663317143213	118.74	1.2488	117.39	117.05	118.3	-1.3444					44	23	4	0	0	0	0.29717	1	11169	11169		63.306	8.53	1	240830			35283	14423	29051	29078	38727	38727					0.060789483112330345
LSHGWLCVP	9	Unmodified	_LSHGWLCVP_					0	0	0			REV__nc|ENSG00000131969|Q7Z5M8-5|ABHD12B	REV__nc|ENSG00000131969|Q7Z5M8-5|ABHD12B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.2776794433594	2	506.257662	1010.50077	-0.07896	-3.9974E-05	2.0327	0.0010291	1.9538	0.00098911	506.25873880026023	60.85	0.29945	57.42	57.345	57.644	-3.43					7	5	2	0	0	0	0.027462	1	4156	4156		18.324	0	1	11332	+		35284	19045	29052	29079	38728	38728					-0.004058512547544524
LSHIRHMSN	9	Unmodified	_LSHIRHMSN_					0	0	0		nc|ENSG00000091831|P03372-2|ESR1;ENSG00000091831|ENST00000206249|ESR1;nc|ENSG00000091831|P03372-3|ESR1	nc|ENSG00000091831|P03372-2|ESR1	nc|ENSG00000091831|P03372-2|ESR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.341064453125	2	547.779825	1093.5451	-1.2046	-0.00065984	-3.6319	-0.0019895	-4.8365	-0.0026493	547.7779859531526	73.52	0.9161	70.124	69.688	70.604	-3.3961					30	18	2	0	0	0	0.027462	1	5651	5651		26.693	3.6504	1	99106			35285	1876	29053	29080	38729	38729					0.002065528914499737
LSHIRHMSN	9	Unmodified	_LSHIRHMSN_					0	0	0		nc|ENSG00000091831|P03372-2|ESR1;ENSG00000091831|ENST00000206249|ESR1;nc|ENSG00000091831|P03372-3|ESR1	nc|ENSG00000091831|P03372-2|ESR1	nc|ENSG00000091831|P03372-2|ESR1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	547.779825	1093.5451	0.31196	0.00017089	-1.7653	-0.000967	-1.4533	-0.00079611	547.7777312338943	72.427	0.57552	69.92	69.695	70.27	-2.5071	-0.10208	0.0016983	NaN	26.693	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19601			35286	1876	29053	29080							0.002065528914499737
LSHIRKMV	8	Unmodified	_LSHIRKMV_					0	0	0			REV__DDX60|p.L860Qfs*23|1|0.12|ENSG00000137628|chr4:168272134-168272135|-/AACTT|frameshift_variant	REV__DDX60|p.L860Qfs*23|1|0.12|ENSG00000137628|chr4:168272134-168272135|-/AACTT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.7225341796875	2	492.294579	982.574605	-0.86374	-0.00042521	-2.9046	-0.0014299	-3.7683	-0.0018551	492.2930172141345	50.46	0.70578	50.46	50.201	50.907	0					31	15	3	0	0	0	0.028476	1	3820	3820		18.324	0.95945	1	436880	+		35287	16283	29054	29081	38730	38730					0.08262116907587824
LSHKGQLSD	9	Unmodified	_LSHKGQLSD_					0	0	0			REV__ENSG00000029725|ENST00000537505|RABEP1	REV__ENSG00000029725|ENST00000537505|RABEP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.7704162597656	2	492.759081	983.503609	-0.12795	-6.305E-05	-0.61643	-0.00030375	-0.74438	-0.0003668	492.7585087644386	46.715	0.56399	43.643	43.398	43.962	-3.0724					14	10	2	0	0	0	0.027462	1	2495	2495		34.173	14.142	1	25672	+		35288	16583	29055	29082	38731	38731					0.01119695403770038
LSHLAESKQI	10	Unmodified	_LSHLAESKQI_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN-WDR67|2|fusion;UTRN-WDR67|1|fusion	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OvCa99_classI_Rep5	1	563.3202514648438	2	563.316763	1124.61897	1.2142	0.000684	4.4214	0.0024907	5.6356	0.0031746	563.3191568945346	158.92	3.1151	158.92	156.55	159.66	0					133	63	5	0	0	0	0.24425	1	18626	18626		87.696	2.7809	1	3146600			35289	5647	29056	29083	38732	38732					0.06164799534758458
LSHLDESPAY	10	Unmodified	_LSHLDESPAY_					0	0	0		nc|ENSG00000175832|P43268-3|ETV4;chr17:43532939-43533859|395|18.25|0.53|5.12|-|ENST00000545089|ETV4,ETV4;nc|ENSG00000175832|P43268-2|ETV4;chr17:43545367-43546185|372|10.01|0.28|5.17|-|ENST00000545954|ETV4,ETV4;ENSG00000175832|ENST00000319349|ETV4;chr17:43545668-43545861|416|29.48|0.67|5.47|-|ENST00000591713|ETV4,ETV4	nc|ENSG00000175832|P43268-3|ETV4	nc|ENSG00000175832|P43268-3|ETV4	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.2933959960938	2	566.269478	1130.5244	0.35744	0.00020241	-1.5013	-0.00085013	-1.1439	-0.00064773	566.2679534525856	70.833	0.31264	70.833	70.681	70.994	0					11	7	2	0	0	0	0.026871	1	6824	6824		37.159	27.976	1	194110			35290	385	29057	29084	38733	38733					-0.03563759007238332
LSHLKSESK	9	Unmodified	_LSHLKSESK_					0	0	0		ENSG00000162782|ENST00000444136|TDRD5	ENSG00000162782|ENST00000444136|TDRD5	ENSG00000162782|ENST00000444136|TDRD5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7890625	2	514.790381	1027.56621	-0.24565	-0.00012646	-0.21873	-0.0001126	-0.46439	-0.00023906	514.7898282936693	78.842	1.2315	76.09	75.899	77.13	-2.7514					34	25	2	0	0	0	0.027353	1	6405	6405		82.241	28.889	1	165370			35291	6235	29058	29085	38734	38734					0.05352841471949432
LSHQKRRLG	9	Unmodified	_LSHQKRRLG_					0	0	0			REV__ENSG00000115268|ENST00000592588|RPS15	REV__ENSG00000115268|ENST00000592588|RPS15	MULTI-MSMS	OvCa9_classI_Rep3	3	547.8264770507812	2	547.830706	1093.64686	-6.0457	-0.003312	-1.7509	-0.00095921	-7.7967	-0.0042713	547.8295905768617	154.78	1.79	153.77	152.92	154.71	-1.0076					93	40	3	0	0	0	0.63422	1	13286	13286		27.882	5.9224	1	69775	+		35292	18230	29059	29086	38735	38735					0.1037816730549821
LSHQNWFV	8	Unmodified	_LSHQNWFV_					0	0	0			REV__ENST00000480284.1_1_7:156808744-156808858:+|nuORF	REV__ENST00000480284.1_1_7:156808744-156808858:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7594604492188	2	515.758884	1029.50321	-1.208	-0.00062302	0.98362	0.00050731	-0.22434	-0.00011571	515.7591988356623	42.506	1.6569	39.526	39.011	40.668	-2.9804					71	30	3	0	0	0	0.67745	1	1961	1961		47.916	7.343	1	283680	+		35293	26455	29060	29087	38736	38736					-0.010356795254438111
LSHRLKQV	8	Unmodified	_LSHRLKQV_					0	0	0			REV__ENSG00000187037|ENST00000334425|GPR141	REV__ENSG00000187037|ENST00000334425|GPR141	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.8047180175781	2	490.803626	979.592698	0.061303	3.0088E-05	-0.54442	-0.0002672	-0.48312	-0.00023712	490.8032853266867	58.581	1.5932	55.189	54.852	56.445	-3.392					57	31	3	0	0	0	0.71369	1	3867	3867		40.573	0	1	335540	+		35294	22627	29061	29088	38737	38737					0.10208575153933452
LSHRLKQV	8	Unmodified	_LSHRLKQV_					0	0	0			REV__ENSG00000187037|ENST00000334425|GPR141	REV__ENSG00000187037|ENST00000334425|GPR141	MULTI-MATCH	OvCa9_classI_Rep2	2		2	490.803626	979.592698	-0.046178	-2.2664E-05	-0.26	-0.00012761	-0.30618	-0.00015027	490.8034082715108	57.857	1.5491	55.065	54.576	56.125	-2.792	-0.061759	9.5099E-05	NaN	40.573	67	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218040	+		35295	22627	29061	29088							0.10208575153933452
LSHRPKGG	8	Unmodified	_LSHRPKGG_					0	0	0			REV__nc|ENSG00000130734|Q86TL0-2|ATG4D	REV__nc|ENSG00000130734|Q86TL0-2|ATG4D	MULTI-MSMS	OvCa9_classI_Rep2	2	426.2459411621094	2	426.245944	850.477334	-0.93249	-0.00039747	1.1012	0.00046937	0.16868	7.1901E-05	426.2463036759244	138.33	1.7168	138.1	137.59	139.3	-0.22696					83	34	3	0	0	0	0.74209	1	13896	13896		12.959	0	1	161940	+		35296	18965	29062	29089	38738	38738					0.046114710229517186
LSHRRRIL	8	Unmodified	_LSHRRRIL_					0	0	0			REV__ENSG00000115616|ENST00000233969|SLC9A2	REV__ENSG00000115616|ENST00000233969|SLC9A2	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.8370971679688	2	525.835791	1049.65703	0.017549	9.2276E-06	2.119	0.0011143	2.1366	0.0011235	525.8368001771031	114.12	1.6848	112.67	112.34	114.02	-1.4461					77	32	4	0	0	0	0.60331	1	10620	10620		63.306	6.5852	1	141600	+		35297	18260	29063	29090	38739	38739					0.13418775030731922
LSHSCLFPCI	10	Unmodified	_LSHSCLFPCI_					0	0	0		ENST00000518993.1_1_8:60033259-60033361:+|nuORF	ENST00000518993.1_1_8:60033259-60033361:+|nuORF	ENST00000518993.1_1_8:60033259-60033361:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	560.2713012695312	2	560.269912	1118.52527	2.8139	0.0015766	-0.70004	-0.00039221	2.1139	0.0011843	560.2693764786175	115.56	1.071	115.56	115.25	116.32	0					51	22	3	0	0	0	0.46756	1	13197	13197		58.782	19.976	1	1626600			35298	13078	29064	29091	38740	38740					-0.029249591635334582
LSHTLGAASP	10	Unmodified	_LSHTLGAASP_					0	0	0		ENSG00000152217|ENST00000649279|SETBP1	ENSG00000152217|ENST00000649279|SETBP1	ENSG00000152217|ENST00000649279|SETBP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	476.7373962402344	2	477.256174	952.497795	-0.026486	-1.2641E-05	-1.3207	-0.00063031	-1.3472	-0.00064295	477.25514667542876	71.17	0.23666	71.17	71.031	71.267	0					6	5	2	0	0	0	0.026956	1	6866	6866		26.693	6.6961	1	261050			35299	5611	29065	29092	38741	38741					0.019645968920826817
LSIACLPYID	10	Unmodified	_LSIACLPYID_					0	0	0		ENSG00000120210|ENST00000381641|INSL6	ENSG00000120210|ENST00000381641|INSL6	ENSG00000120210|ENST00000381641|INSL6	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.8153076171875	2	554.291368	1106.56818	-0.37629	-0.00020857	2.89	0.0016019	2.5137	0.0013933	554.7944247357514	59.96	0.42714	59.96	59.726	60.153	0					14	10	2	0	0	0	0.026802	1	5177	5177		34.173	0	1	1397700			35300	3419	29066	29093	38742	38742					0.01916134165526273
LSIARVLVS	9	Unmodified	_LSIARVLVS_					0	0	0			REV__nc|ENSG00000138399|Q53R41-2|FASTKD1	REV__nc|ENSG00000138399|Q53R41-2|FASTKD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.7367248535156	2	479.30821	956.601866	2.4993	0.0011979	0.395	0.00018933	2.8943	0.0013873	479.30813127980264	94.938	0.42914	94.938	94.732	95.161	0					18	9	3	0	0	0	0.027441	1	10374	10374		32.812	16.339	1	237700	+		35301	19538	29067	29094	38743	38743					0.12182923719603878
LSIDQLLK	8	Unmodified	_LSIDQLLK_					0	0	0			REV__tr|A0A7D6VNH0|A0A7D6VNH0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17840PE=4SV=1	REV__tr|A0A7D6VNH0|A0A7D6VNH0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17840PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	465.28753662109375	2	465.286943	928.559333	1.1573	0.00053847	0.013306	6.1913E-06	1.1706	0.00054466	465.28690894468224	123.63	2.1609	123.63	123.33	125.49	0					141	49	6	0	0	0	0.44803	2	14378	14378;14408		82.75	3.2516	1	30233000	+		35302	31180	29068	29095	38744;38745	38744					0.09219528591381732
LSIEDIDIN	9	Unmodified	_LSIEDIDIN_					0	0	0		tr|A0A7D6VP78|A0A7D6VP78_9CLOTSugarkinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15620PE=4SV=1	tr|A0A7D6VP78|A0A7D6VP78_9CLOTSugarkinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15620PE=4SV=1	tr|A0A7D6VP78|A0A7D6VP78_9CLOTSugarkinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15620PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7791748046875	2	516.266404	1030.51826	-1.0431	-0.00053852	-1.4089	-0.00072738	-2.452	-0.0012659	516.2645114468738	42.178	0.34616	42.178	41.853	42.199	0					12	7	2	0	0	0	0.027425	1	2687	2687		51.193	19.663	1	70085			35303	34756	29069	29096	38746	38746					0.004217227612343777
LSIEQQKL	8	Unmodified	_LSIEQQKL_					0	0	0			REV__tr|A0A553SHI6|A0A553SHI6_NIACIDUF348domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12955PE=4SV=1	REV__tr|A0A553SHI6|A0A553SHI6_NIACIDUF348domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12955PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	479.7818908691406	2	479.782025	957.549496	-0.25571	-0.00012269	-0.27602	-0.00013243	-0.53173	-0.00025511	479.78171839820584	43.305	0.33532	43.305	43.1	43.435	0					13	7	2	0	0	0	0.17036	1	2846	2846		129.68	0.26133	1	2228500	+		35304	29806	29070	29097	38747	38747					0.06902340586009359
LSIEQQKL	8	Unmodified	_LSIEQQKL_					0	0	0			REV__tr|A0A553SHI6|A0A553SHI6_NIACIDUF348domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12955PE=4SV=1	REV__tr|A0A553SHI6|A0A553SHI6_NIACIDUF348domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12955PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	479.782025	957.549496	-0.25571	-0.00012269	-0.27602	-0.00013243	-0.53173	-0.00025511	479.78171839820584	43.305	0.33532	43.305	43.1	43.435	0	0	0	NaN	129.68	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2228500	+		35305	29806	29070	29097							0.06902340586009359
LSIILSGTW	9	Unmodified	_LSIILSGTW_					0	0	0		ENST00000489377.1_1_9:103207326-103207509:+|nuORF;nc|ENSG00000066697|Q96H12-2|MSANTD3	ENST00000489377.1_1_9:103207326-103207509:+|nuORF	ENST00000489377.1_1_9:103207326-103207509:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.287841796875	2	495.286943	988.559333	-0.37964	-0.00018803	-1.8145	-0.00089867	-2.1941	-0.0010867	495.2868711330298	103.48	1.4653	101.36	101.07	102.53	-2.1192					65	27	4	0	0	0	0.36502	1	9357	9357		55.504	0.78186	1	480020			35306	12676	29071	29098	38748	38748					0.0645952859136969
LSIIRGIVE	9	Unmodified	_LSIIRGIVE_					0	0	0		ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	OvCa9_classI_Rep2	2	500.3128662109375	2	500.313492	998.612431	0.59332	0.00029685	-0.99705	-0.00049884	-0.40373	-0.00020199	500.3129079797688	127.44	1.7293	127.21	126.84	128.57	-0.2359					109	34	4	0	0	0	0.12515	1	12441	12441		90.37	9.9152	1	1360100			35307	8708	29072	29099	38749	38749					0.11306906374034043
LSIIRGIVE	9	Unmodified	_LSIIRGIVE_					0	0	0		ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	OvCa9_classI_Rep3	3	500.31292724609375	2	500.313492	998.612431	0.37155	0.00018589	-0.7555	-0.00037799	-0.38395	-0.00019209	500.31302313941114	128.99	2.6573	127.9	127.57	130.22	-1.0933					135	53	5	0	0	0	0.48047	1	10273	10273		44.377	5.571	1	747300			35308	8708	29072	29099	38750	38750					0.11306906374034043
LSIIRGIVE	9	Unmodified	_LSIIRGIVE_					0	0	0		ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.31280517578125	2	500.313492	998.612431	1.0798	0.00054023	-1.5065	-0.0007537	-0.42668	-0.00021347	500.31266361849487	129.33	2.2681	127.88	127.55	129.81	-1.4565					119	45	5	0	0	0	0.2422	1	12360	12360		69.628	5.4204	1	1004600			35309	8708	29072	29099	38751	38751					0.11306906374034043
LSIISGAPAI	10	Unmodified	_LSIISGAPAI_					0	0	0			REV__nc|ENSG00000167182|Q02086-2|SP2	REV__nc|ENSG00000167182|Q02086-2|SP2	MULTI-MSMS	OvCa99_classI_Rep5	1	471.2882385253906	2	471.286943	940.559333	0.39577	0.00018652	0.059333	2.7963E-05	0.45511	0.00021449	471.2868394335814	72.34	7.0488	72.34	69.552	76.6	0					308	176	2	0	0	0	0.14489	1	6964	6964		102.77	20.468	1	3030900	+		35310	21258	29073	29100	38752	38752					0.0866752859137705
LSIKDELK	8	Unmodified	_LSIKDELK_					0	0	0			REV__nc|ENSG00000134444|Q9P260|RELCH	REV__nc|ENSG00000134444|Q9P260|RELCH	MULTI-MSMS	OvCa9_classI_Rep2	2	473.2834777832031	2	473.2844	944.554247	0.37929	0.00017951	-0.082379	-3.8989E-05	0.29691	0.00014052	473.28410446592477	125.1	1.0877	124.87	124.52	125.6	-0.2359					34	21	3	0	0	0	0.37357	1	12185	12185		93.195	0	1	75666	+		35311	19203	29074	29101	38753	38753					0.07975224728761532
LSIKDELK	8	Unmodified	_LSIKDELK_					0	0	0			REV__nc|ENSG00000134444|Q9P260|RELCH	REV__nc|ENSG00000134444|Q9P260|RELCH	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.2825927734375	2	473.2844	944.554247	-1.6606	-0.00078594	1.53	0.00072412	-0.1306	-6.1812E-05	473.2850355269514	126.32	0.98356	124.9	124.58	125.56	-1.4143					31	19	2	0	0	0	0.64371	1	12014	12014		54.776	0	1	75394	+		35312	19203	29074	29101	38754	38754					0.07975224728761532
LSIKKTLPS	9	Unmodified	_LSIKKTLPS_					0	0	0		ENSG00000155189|ENST00000285518|AGPAT5	ENSG00000155189|ENST00000285518|AGPAT5	ENSG00000155189|ENST00000285518|AGPAT5	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.7668762207031	2	493.815867	985.617182	-0.61975	-0.00030604	-0.17886	-8.8326E-05	-0.79861	-0.00039437	493.81559872771504	68.575	0.34766	65.955	65.77	66.118	-2.6203					18	6	4	0	0	0	0.027295	1	5392	5392		84.916	0	1	110660			35313	5772	29075	29102	38755	38755					0.12379790516808953
LSIKREKQP	9	Unmodified	_LSIKREKQP_					0	0	0			REV__nc|ENSG00000111700|Q9NPD5-2|SLCO1B3	REV__nc|ENSG00000111700|Q9NPD5-2|SLCO1B3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.8079833984375	2	549.835123	1097.65569	-1.7114	-0.00094099	1.0217	0.00056178	-0.68968	-0.00037921	549.8355154955694	50.258	0.67701	47.116	46.871	47.548	-3.1416					22	12	2	0	0	0	0.027459	1	2907	2907		44.377	17.684	1	23100	+		35314	28797	29076	29103	38756	38756					0.1107709615132535
LSINDSLDKSL	11	Unmodified	_LSINDSLDKSL_					0	0	0			REV__ENST00000395375.3_1_7:64389560-64389695:+|nuORF	REV__ENST00000395375.3_1_7:64389560-64389695:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	602.826171875	2	602.824618	1203.63468	-1.3677	-0.00082446	2.4194	0.0014585	1.0517	0.00063401	602.8260393808384	68.613	1.5415	65.993	65.671	67.213	-2.6203					87	30	4	0	0	0	0.52255	1	5419	5419		42.338	2.2799	1	469290	+		35315	25312	29077	29104	38757	38757					0.041010412611285574
LSIQDGLLH	9	Unmodified	_LSIQDGLLH_					0	0	0			REV__ENST00000493599.1_1_20:44979343-44980935:-|nuORF	REV__ENST00000493599.1_1_20:44979343-44980935:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.94317626953125	2	498.279649	994.544745	0.24478	0.00012197	0.031071	1.5482E-05	0.27586	0.00013745	498.2794756496895	80.934	1.8233	79.281	78.611	80.434	-1.6527					53	35	2	0	0	0	0.027418	1	6845	6845		79.451	0	1	40455	+		35316	17050	29078	29105	38758	38758					0.04725456443236453
LSIQDKLCKI	10	Unmodified	_LSIQDKLCKI_					0	0	0			REV__ENST00000494689.5_1_1:233113973-233114171:+|nuORF	REV__ENST00000494689.5_1_1:233113973-233114171:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	580.8383178710938	2	580.839017	1159.66348	0.52161	0.00030297	-0.62945	-0.00036561	-0.10784	-6.2635E-05	580.8384501537045	91.799	4.0228	90.563	88.747	92.77	-1.2355					168	77	3	0	0	0	0.28845	1	8166	8166		82.241	20.133	1	640260	+		35317	26732	29079	29106	38759	38759					0.09003487356585538
LSIQDKLCKI	10	Unmodified	_LSIQDKLCKI_					0	0	0			REV__ENST00000494689.5_1_1:233113973-233114171:+|nuORF	REV__ENST00000494689.5_1_1:233113973-233114171:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	580.8401489257812	2	580.839017	1159.66348	-1.4543	-0.00084474	1.1995	0.0006967	-0.25486	-0.00014803	580.8393748358645	93.015	4.9536	90.508	87.869	92.823	-2.5072					166	99	4	0	0	0	0.37436	1	8089	8089		71.877	4.3838	1	764120	+		35318	26732	29079	29106	38760	38760					0.09003487356585538
LSIRQLGPITL	11	Unmodified	_LSIRQLGPITL_					0	0	0			REV__HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|33|1|sense	REV__HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|33|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	403.6784973144531	3	404.255446	1209.74451	1.3182	0.00053291	3.51	0.0014189	4.8282	0.0019518	404.5903551644297	58.408	0.24989	58.408	58.28	58.53	0					7	5	2	0	0	0	0.025909	1	4961	4961		8.7993	0	1	80314	+		35319	28242	29080	29107	38761	38761					0.14802511390985273
LSISEQLVA	9	Unmodified	_LSISEQLVA_					0	0	0			REV__ENST00000489098.1_1_1:159921578-159923948:-|nuORF	REV__ENST00000489098.1_1_1:159921578-159923948:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	480.2760314941406	2	480.274032	958.533512	2.7361	0.0013141	0.32813	0.00015759	3.0642	0.0014716	480.2741078992909	86.389	0.48423	86.389	86.153	86.637	0					24	11	3	0	0	0	0.14998	1	9116	9116		84.916	2.675	1	1180400	+		35320	20770	29081	29108	38762	38762					0.05258634349092972
LSISEQLVA	9	Unmodified	_LSISEQLVA_					0	0	0			REV__ENST00000489098.1_1_1:159921578-159923948:-|nuORF	REV__ENST00000489098.1_1_1:159921578-159923948:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.2746276855469	2	480.274032	958.533512	-1.1801	-0.00056679	0.84015	0.0004035	-0.33999	-0.00016329	480.2743460661196	95.508	1.7683	93.04	92.46	94.229	-2.4685					85	34	3	0	0	0	0.1149	1	8415	8415		93.143	2.5424	1	1062900	+		35321	20770	29081	29108	38763	38763					0.05258634349092972
LSISEQLVA	9	Unmodified	_LSISEQLVA_					0	0	0			REV__ENST00000489098.1_1_1:159921578-159923948:-|nuORF	REV__ENST00000489098.1_1_1:159921578-159923948:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	480.274032	958.533512	2.7361	0.0013141	0.32813	0.00015759	3.0642	0.0014716	480.2741078992909	86.389	0.48423	86.389	86.153	86.637	0	0	0	NaN	84.916	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1180400	+		35322	20770	29081	29108							0.05258634349092972
LSISGNFSL	9	Unmodified	_LSISGNFSL_					0	0	0		ENSG00000123307|ENST00000242994|NEUROD4	ENSG00000123307|ENST00000242994|NEUROD4	ENSG00000123307|ENST00000242994|NEUROD4	MULTI-MSMS	OvCa9_classI_Rep3	3	469.25408935546875	2	469.2531	936.491647	-0.79526	-0.00037318	0.65772	0.00030864	-0.13754	-6.4541E-05	469.25341955315633	86.432	2.2386	84.255	84.03	86.269	-2.1768					105	43	4	0	0	0	0.14855	1	5174	5174		85.161	5.7098	1	2599900			35323	3586	29082	29109	38764	38764					0.0208607866057946
LSISRVFPP	9	Unmodified	_LSISRVFPP_					0	0	0			REV__tr|A0A553SRA5|A0A553SRA5_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_00510PE=3SV=1	REV__tr|A0A553SRA5|A0A553SRA5_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_00510PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	508.3019714355469	2	508.300384	1014.58622	0.17446	8.8677E-05	2.4872	0.0012642	2.6616	0.0013529	508.3016033253037	81.716	3.6233	80.067	78.915	82.538	-1.6485					135	71	4	0	0	0	0.29717	1	6945	6945		63.306	2.3343	1	1275400	+		35324	30712	29083	29110	38765	38765					0.07950637202566213
LSISRVFPP	9	Unmodified	_LSISRVFPP_					0	0	0			REV__tr|A0A553SRA5|A0A553SRA5_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_00510PE=3SV=1	REV__tr|A0A553SRA5|A0A553SRA5_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_00510PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.30303955078125	2	508.300384	1014.58622	-0.76419	-0.00038844	3.4837	0.0017707	2.7195	0.0013823	508.30206007936306	82.679	2.0447	79.996	79.298	81.343	-2.6829					138	41	5	0	0	0	0.21395	1	6830	6830		73.975	4.3471	1	2020600	+		35325	30712	29083	29110	38766	38766					0.07950637202566213
LSISVRQAR	9	Unmodified	_LSISVRQAR_					0	0	0			REV__ENST00000566452.1_1_16:56533650-56534800:-|nuORF	REV__ENST00000566452.1_1_16:56533650-56534800:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	515.3101196289062	2	515.311815	1028.60908	-0.90587	-0.00046681	0.70171	0.0003616	-0.20416	-0.00010521	515.3120916584093	26.017	0.74876	26.017	25.594	26.342	0					24	14	2	0	0	0	0.59259	1	636	636		32.812	1.2826	1	387010	+		35326	27690	29084	29111	38767	38767					0.09591656320048969
LSITIIADN	9	Unmodified	_LSITIIADN_					0	0	0		ENST00000311085.8_2_5:118469550-118469595:+|nuORF	ENST00000311085.8_2_5:118469550-118469595:+|nuORF	ENST00000311085.8_2_5:118469550-118469595:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	480.2732849121094	2	480.274032	958.533512	2.2025	0.0010578	-0.18123	-8.7039E-05	2.0213	0.00097077	480.274001189228	92.824	1.5364	92.824	92.515	94.051	0					79	36	4	0	0	0	0.14855	1	10099	10099		85.161	4.7062	1	56205000			35327	10291	29085	29112	38768	38768					0.05258634349092972
LSITLDVYKS	10	Unmodified	_LSITLDVYKS_					0	0	0		ENST00000530686.5_1_11:27679821-27680730:+|nuORF	ENST00000530686.5_1_11:27679821-27680730:+|nuORF	ENST00000530686.5_1_11:27679821-27680730:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.7868041992188	2	569.821347	1137.62814	3.7861	0.0021574	-1.0093	-0.00057509	2.7768	0.0015823	569.8204269499964	88.32	0.58644	88.32	87.881	88.467	0					18	13	2	0	0	0	0.026891	1	9394	9394		31.53	0	1	434770			35328	13293	29086	29113	38769	38769					0.06483148100414837
LSIVEVLVV	9	Unmodified	_LSIVEVLVV_					0	0	0		tr|A0A7D6VU58|A0A7D6VU58_9CLOTTransketolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11235PE=4SV=1	tr|A0A7D6VU58|A0A7D6VU58_9CLOTTransketolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11235PE=4SV=1	tr|A0A7D6VU58|A0A7D6VU58_9CLOTTransketolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11235PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	485.81414794921875	2	485.812793	969.611034	1.4031	0.00068165	0.38188	0.00018552	1.785	0.00086717	485.8128285577155	147.57	4.5874	147.57	147.11	151.7	0					195	92	4	0	0	0	0.34496	1	17401	17401		57.811	0	1	1725900			35329	35167	29087	29114	38770	38770					0.12501272285282994
LSIVGFFSLVL	11	Unmodified	_LSIVGFFSLVL_					0	0	0			REV__tr|A0A553SRY9|A0A553SRY9_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_02050PE=4SV=1	REV__tr|A0A553SRY9|A0A553SRY9_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_02050PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8561401367188	2	597.860275	1193.706	-3.1765	-0.0018991	-3.3266	-0.0019889	-6.5032	-0.003888	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.60323	1	14919	14919		44.377	5.6236	1	436470	+		35330	30778	29088	29115	38771	38771					0.11689205756465526
LSIVTDMMYE	10	Unmodified	_LSIVTDMMYE_					0	0	0			REV__nc|ENSG00000101972|Q8N3U4|STAG2	REV__nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MSMS	OvCa99_classI_Rep5	1	601.27880859375	2	601.2776	1200.54065	1.1698	0.00070339	1.5048	0.00090481	2.6746	0.0016082	601.278314509645	139.44	2.2074	139.44	138.98	141.18	0					116	45	4	0	0	0	0.20801	2	16281	16281;16384		93.195	8.0346	1	2320900	+		35331	17530	29089	29116	38772;38773	38772					-0.05160137156985911
LSIWAREI	8	Unmodified	_LSIWAREI_					0	0	0		tr|A0A553SN76|A0A553SN76_NIACIDamage-inducibleproteinDinBOS=NialliacirculansOX=1397GN=CEQ21_23970PE=3SV=1	tr|A0A553SN76|A0A553SN76_NIACIDamage-inducibleproteinDinBOS=NialliacirculansOX=1397GN=CEQ21_23970PE=3SV=1	tr|A0A553SN76|A0A553SN76_NIACIDamage-inducibleproteinDinBOS=NialliacirculansOX=1397GN=CEQ21_23970PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	494.28570556640625	2	494.284734	986.554916	-0.09699	-4.7941E-05	3.0706	0.0015177	2.9736	0.0014698	494.28606431515385	83.612	2.4718	82.013	81.369	83.841	-1.5988					133	49	4	0	0	0	0.47599	1	7199	7199		79.939	0.48821	1	1379300			35332	33908	29090	29117	38774	38774					0.0611006416845612
LSIYIHYL	8	Unmodified	_LSIYIHYL_					0	0	0		tr|A0A553SJ87|A0A553SJ87_NIACISugarABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16375PE=4SV=1	tr|A0A553SJ87|A0A553SJ87_NIACISugarABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16375PE=4SV=1	tr|A0A553SJ87|A0A553SJ87_NIACISugarABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16375PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.288818359375	2	511.289485	1020.56442	0.012984	6.6386E-06	-3.9003	-0.0019942	-3.8873	-0.0019875	511.28747165700065	96.247	1.9151	93.821	93.254	95.169	-2.4256					85	33	5	0	0	0	0.63104	1	8544	8544		57.453	9.7953	1	1242600			35333	33478	29091	29118	38775	38775					0.05495832453971161
LSIYQSLEKRL	11	Unmodified	_LSIYQSLEKRL_					0	0	0			REV__nc|ENSG00000151746|Q96G01-4|BICD1	REV__nc|ENSG00000151746|Q96G01-4|BICD1	MULTI-MSMS	OvCa9_classI_Rep2	2	450.59710693359375	3	450.59776	1348.77145	2.0912	0.00094228	-1.5871	-0.00071516	0.50403	0.00022712	450.59700338359727	73.597	2.3004	71.197	70.687	72.988	-2.3999					152	43	5	0	0	0	0.66539	1	6017	6017		38.714	2.3964	1	946140	+		35334	20254	29092	29119	38776	38776					0.11101575211500858
LSKAIVPGV	9	Unmodified	_LSKAIVPGV_					0	0	0			REV__ENSG00000119899|ENST00000355773|SLC17A5	REV__ENSG00000119899|ENST00000355773|SLC17A5	MULTI-MSMS	OvCa9_classI_Rep2	2	442.2839660644531	2	442.284203	882.553853	1.6583	0.00073342	-1.6177	-0.00071549	0.040553	1.7936E-05	442.28338106061653	82.838	2.7545	81.239	80.593	83.347	-1.5989					140	54	4	0	0	0	0.50149	1	7099	7099		42.396	1.618	1	665470	+		35335	18471	29093	29120	38777	38777					0.10787849799567084
LSKAIVPGV	9	Unmodified	_LSKAIVPGV_					0	0	0			REV__ENSG00000119899|ENST00000355773|SLC17A5	REV__ENSG00000119899|ENST00000355773|SLC17A5	MULTI-MSMS	OvCa9_classI_Rep4_	4	442.2853088378906	2	442.284203	882.553853	0.10729	4.7454E-05	-0.064456	-2.8508E-05	0.042836	1.8946E-05	442.2840700770903	83.732	1.9627	81.069	80.681	82.643	-2.6629					125	40	4	0	0	0	0.36502	4	6969	6959;6969;6991;7031		55.504	5.1738	1	1109000	+		35336	18471	29093	29120	38778;38779;38780;38781	38779					0.10787849799567084
LSKAKKQE	8	Unmodified	_LSKAKKQE_					0	0	0		nc|ENSG00000133131|Q8TE76-2|MORC4;nc|ENSG00000133131|Q8TE76-3|MORC4;ENSG00000133131|ENST00000355610|MORC4	nc|ENSG00000133131|Q8TE76-2|MORC4	nc|ENSG00000133131|Q8TE76-2|MORC4	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.28143310546875	2	466.282192	930.549831	-0.58453	-0.00027256	-0.15787	-7.3613E-05	-0.7424	-0.00034617	466.28204699867223	73.929	1.6264	70.698	70.386	72.012	-3.2308					105	33	4	0	0	0	0.48084	1	5795	5795		79.451	5.196	1	1978700			35337	4207	29094	29121	38782	38782					0.08177760305841275
LSKAVSTIDP	10	Unmodified	_LSKAVSTIDP_					0	0	0			REV__ENSG00000139410|ENST00000403593|SDSL	REV__ENSG00000139410|ENST00000403593|SDSL	MULTI-SECPEP	OvCa9_classI_Rep2	2	514.8021240234375	2	515.792589	1029.57063	-0.20987	-0.00010825	0.41302	0.00021303	0.20315	0.00010478	515.792872898029	94.152	1.9635	93.053	92.382	94.345	-1.0995					74	38	3	0	0	0	0.026714	1	8412	8412		35.152	12.11	1	49110	+		35338	19608	29095	29122	38783	38783					0.057023058948516336
LSKFGVKFFK	10	Unmodified	_LSKFGVKFFK_					0	0	0			REV__tr|A0A7D6ZWA2|A0A7D6ZWA2_9CLOTCopper-exportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18195PE=3SV=1	REV__tr|A0A7D6ZWA2|A0A7D6ZWA2_9CLOTCopper-exportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18195PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	400.9098205566406	3	400.909498	1199.70667	1.3628	0.00054637	1.7097	0.00068542	3.0725	0.0012318	400.91002361674947	22.278	0.23828	22.278	22.142	22.381	0					8	5	2	0	0	0	0.77834	1	191	191		21.686	1.6553	1	17339	+		35339	32279	29096	29123	38784	38784					0.11480045196162791
LSKFMFSLV	9	Oxidation (M)	_LSKFM(Oxidation (M))FSLV_		LSKFM(1)FSLV		LSKFM(88)FSLV	0	0	1			REV__L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|269|3|anti-sense	REV__L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|269|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	544.3009643554688	2	544.296453	1086.57835	-1.0776	-0.00058652	3.2972	0.0017946	2.2196	0.0012081	544.2982149358995	84.489	1.1587	82.228	81.836	82.994	-2.261					56	22	3	0	0	0	0.13504	1	4892	4892		87.696	7.9839	1	285670	+		35340	28571	29097	29124	38785	38785		628			0.03852741890773359
LSKFMFSLV	9	Oxidation (M)	_LSKFM(Oxidation (M))FSLV_					0	0	1			REV__L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|269|3|anti-sense	REV__L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|269|3|anti-sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	544.296453	1086.57835	-0.96262	-0.00052395	2.336	0.0012715	1.3734	0.00074751	544.2975804832115	83.836	1.3199	82.29	81.784	83.104	-1.5462	0.022604	0.00018092	NaN	87.696	55	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139290	+		35341	28571	29097	29124				628			0.03852741890773359
LSKFRKIIK	9	Unmodified	_LSKFRKIIK_					0	0	0		ENSG00000164430|ENST00000370315|CGAS;nc|ENSG00000164430|Q8N884-2|CGAS;ENST00000459924.1_1_6:74149899-74155344:-|nuORF	ENSG00000164430|ENST00000370315|CGAS	ENSG00000164430|ENST00000370315|CGAS	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.3176879882812	2	566.881876	1131.7492	-0.23434	-0.00013284	-0.0082045	-4.651E-06	-0.24255	-0.0001375	566.8817343216376	55.36	1.4314	55.36	55.107	56.538	0					83	34	4	0	0	0	0.027426	1	4686	4686		76.774	13.468	1	2351600			35342	6456	29098	29125	38786	38786					0.18859440324399657
LSKGFWSL	8	Unmodified	_LSKGFWSL_					0	0	0		ENST00000520044.5_1_8:67579912-67592186:+|nuORF;nc|nan|Q96CB5|C8orf44	ENST00000520044.5_1_8:67579912-67592186:+|nuORF	ENST00000520044.5_1_8:67579912-67592186:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	469.2532043457031	2	469.260728	936.506903	-1.5278	-0.00071692	-3.0373	-0.0014253	-4.5651	-0.0021422	469.25921838801776	85.499	0.88963	84.008	83.653	84.543	-1.4906					44	17	4	0	0	0	0.028476	1	7437	7437		113.41	39.157	1	247540			35343	13097	29099	29126	38787	38787					0.03610990248421331
LSKGFWSL	8	Unmodified	_LSKGFWSL_					0	0	0		ENST00000520044.5_1_8:67579912-67592186:+|nuORF;nc|nan|Q96CB5|C8orf44	ENST00000520044.5_1_8:67579912-67592186:+|nuORF	ENST00000520044.5_1_8:67579912-67592186:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	469.260728	936.506903	-0.80056	-0.00037567	-3.5532	-0.0016674	-4.3538	-0.0020431	469.25892658543114	85.984	0.75117	83.764	83.386	84.137	-2.2204	-0.16867	0.0003239	NaN	113.41	42	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	487310			35344	13097	29099	29126							0.03610990248421331
LSKIFDITDEV	11	Unmodified	_LSKIFDITDEV_					0	0	0			REV__tr|A0A553SP84|A0A553SP84_NIACIPyridoxalphosphatehomeostasisproteinOS=NialliacirculansOX=1397GN=CEQ21_25900PE=3SV=1	REV__tr|A0A553SP84|A0A553SP84_NIACIPyridoxalphosphatehomeostasisproteinOS=NialliacirculansOX=1397GN=CEQ21_25900PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	640.3416748046875	2	640.342643	1278.67073	-0.074961	-4.8E-05	-2.3901	-0.0015305	-2.4651	-0.0015785	640.3411241833008	52.277	2.1733	49.069	48.742	50.915	-3.208					129	42	5	0	0	0	0.43443	1	3111	3111		27.047	2.5281	1	2332400	+		35345	30511	29100	29127	38788	38788					0.04254498437967413
LSKIKFTM	8	Unmodified	_LSKIKFTM_					0	0	0		tr|A0A7D6VSI5|A0A7D6VSI5_9CLOTV-typeATPsynthasesubunitIOS=ClostridiumintestinaleOX=36845GN=HZF06_16700PE=3SV=1	tr|A0A7D6VSI5|A0A7D6VSI5_9CLOTV-typeATPsynthasesubunitIOS=ClostridiumintestinaleOX=36845GN=HZF06_16700PE=3SV=1	tr|A0A7D6VSI5|A0A7D6VSI5_9CLOTV-typeATPsynthasesubunitIOS=ClostridiumintestinaleOX=36845GN=HZF06_16700PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.2930908203125	2	484.285889	966.557224	-1.1976	-0.00057999	-1.8448	-0.00089342	-3.0424	-0.0014734	484.2847641052905	95.305	0.80321	92.836	92.611	93.414	-2.4685					38	15	3	0	0	0	0.028476	1	8384	8384		26.796	0	1	101290			35346	35028	29101	29128	38789	38789					0.07260776581904338
LSKIPHGDP	9	Unmodified	_LSKIPHGDP_					0	0	0		nc|ENSG00000130226|P42658-2|DPP6;ENSG00000130226|ENST00000377770|DPP6	nc|ENSG00000130226|P42658-2|DPP6	nc|ENSG00000130226|P42658-2|DPP6	MULTI-SECPEP	OvCa9_classI_Rep3	3	481.2778625488281	2	482.266542	962.51853	-0.56558	-0.00027276	0.26881	0.00012964	-0.29677	-0.00014312	482.26661487954584	75.254	3.2846	72.843	71.548	74.832	-2.4106					119	64	3	0	0	0	0.027418	1	4003	4003		58.782	19.976	1	361010			35347	3970	29102	29129	38790	38790					0.03577187271741877
LSKKLISME	9	Oxidation (M)	_LSKKLISM(Oxidation (M))E_		LSKKLISM(1)E		LSKKLISM(120)E	0	0	1			REV__ENSG00000147082|ENST00000376042|CCNB3	REV__ENSG00000147082|ENST00000376042|CCNB3	MULTI-MSMS	OvCa99_classI_Rep5	1	532.8046875	2	532.804642	1063.59473	-0.40639	-0.00021653	-3.4663	-0.0018468	-3.8727	-0.0020634	532.8027714700471	54.439	1.3511	54.439	54.089	55.44	0					86	31	5	0	0	0	0.053172	2	4379	4379;4402		116.9	17.07	1	16244000	+		35348	20040	29103	29130	38791;38792	38791		464			0.06547823056871493
LSKKLKTVL	9	Unmodified	_LSKKLKTVL_					0	0	0		ENSG00000166349|ENST00000299440|RAG1;nc|ENSG00000166349|P15918-2|RAG1;RAG1|p.L402Hfs*29|1|0.03|ENSG00000166349|chr11:36574508-36574509|-/ACAGGTTTAGAGTTCCGTGTTT|frameshift_variant	ENSG00000166349|ENST00000299440|RAG1	ENSG00000166349|ENST00000299440|RAG1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.309326171875	2	515.35516	1028.69577	1.0358	0.00053379	3.6289	0.0018702	4.6646	0.0024039	515.357228085318	144.81	0.14572	144.81	144.74	144.89	0					4	2	2	0	0	0	0.027462	1	16933	16933		10.265	2.575	1	19635			35349	6669	29104	29131	38793	38793					0.18256642821893365
LSKKMLAPLV	10	Unmodified	_LSKKMLAPLV_					0	0	0			REV__ENSG00000197653|ENST00000673944|DNAH10	REV__ENSG00000197653|ENST00000673944|DNAH10	MULTI-SECPEP	OvCa9_classI_Rep3	3	550.3274536132812	2	550.34902	1098.68349	-1.568	-0.00086293	-0.98413	-0.00054161	-2.5521	-0.0014045	550.348265841306	86.288	0.50179	84.068	83.885	84.387	-2.2204					12	9	2	0	0	0	0.026523	1	5122	5122		49.442	0	1	14151	+		35350	22941	29105	29132	38794	38794					0.13809283087175572
LSKKVVSLK	9	Unmodified	_LSKKVVSLK_					0	0	0			REV__nc|ENSG00000188677|Q9HBI1-2|PARVB	REV__nc|ENSG00000188677|Q9HBI1-2|PARVB	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.23828125	2	501.33951	1000.66447	-0.38008	-0.00019055	1.1784	0.00059078	0.79832	0.00040023	501.3398843802283	41.217	0.45014	41.217	40.969	41.42	0					22	9	3	0	0	0	0.027462	1	2560	2560		35.152	10.949	1	190540	+		35351	29065	29106	29133	38795	38795					0.1641606978780601
LSKLGPNTA	9	Unmodified	_LSKLGPNTA_					0	0	0			REV__ENSG00000119227|ENST00000412723|PIGZ	REV__ENSG00000119227|ENST00000412723|PIGZ	MSMS	OvCa9_classI_Rep2	2	450.7624816894531	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.276	1	26.566	26.066	27.066	-2.7097								0	0	0	0.23413	1	689	689		20.947	1.587	1		+		35352	18430	29107	29134	38796	38796					0.0538578489745305
LSKLKQHL	8	Unmodified	_LSKLKQHL_					0	0	0		ENSG00000148429|ENST00000609104|USP6NL;nc|ENSG00000148429|Q92738-2|USP6NL	ENSG00000148429|ENST00000609104|USP6NL	ENSG00000148429|ENST00000609104|USP6NL	MULTI-SECPEP	OvCa9_classI_Rep2	2	483.2919921875	2	483.808377	965.6022	-0.28059	-0.00013575	-0.72525	-0.00035088	-1.0058	-0.00048663	483.80791679415637	93.77	0.41899	92.67	92.434	92.853	-1.0995					14	7	2	0	0	0	0.028476	1	8393	8393		30.504	0	1	50478			35353	5412	29108	29135	38797	38797					0.11802343439444485
LSKLQLHSS	9	Unmodified	_LSKLQLHSS_					0	0	0			REV__ENSG00000142207|ENST00000382751|URB1	REV__ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	OvCa99_classI_Rep5	1	506.7931213378906	2	506.792924	1011.57129	-1.1334	-0.00057441	0.91382	0.00046312	-0.21961	-0.0001113	506.7933274192437	43.663	0.72588	43.663	43.27	43.995	0					43	16	5	0	0	0	0.38969	1	2897	2897		52.937	1.6012	1	1080600	+		35354	19776	29109	29136	38798	38798					0.06597145334569632
LSKLQLHSS	9	Unmodified	_LSKLQLHSS_					0	0	0			REV__ENSG00000142207|ENST00000382751|URB1	REV__ENSG00000142207|ENST00000382751|URB1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	506.792924	1011.57129	-1.1334	-0.00057441	0.91382	0.00046312	-0.21961	-0.0001113	506.7933274192437	43.663	0.72588	43.663	43.27	43.995	0	0	0	NaN	52.937	43	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1080600	+		35355	19776	29109	29136							0.06597145334569632
LSKLQSCDLF	10	Unmodified	_LSKLQSCDLF_					0	0	0		ENST00000466482.5_1_3:98489996-98501720:+|nuORF;ENST00000495376.5_1_3:98489996-98502446:+|nuORF;ENST00000476833.5_1_3:98489996-98501153:+|nuORF;nc|ENSG00000064225|Q9Y274-2|ST3GAL6;ENSG00000064225|ENST00000483910|ST3GAL6	ENST00000466482.5_1_3:98489996-98501720:+|nuORF	ENST00000466482.5_1_3:98489996-98501720:+|nuORF	MSMS	OvCa99_classI_Rep5	1	577.293212890625	2	577.299724	1152.5849	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.01	1	149.01	148.51	149.51	0								0	0	0	0.13099	1	17443	17443		56.434	6.9922	1				35356	1295	29110	29137	38799	38799					0.014706350514643418
LSKMGITTF	9	Unmodified	_LSKMGITTF_					0	0	0		nc|ENSG00000165383|Q8N456-2|LRRC18;ENSG00000165383|ENST00000374160|LRRC18	nc|ENSG00000165383|Q8N456-2|LRRC18	nc|ENSG00000165383|Q8N456-2|LRRC18	MULTI-MSMS	OvCa9_classI_Rep3	3	499.2720642089844	2	499.272978	996.531403	-0.72327	-0.00036111	-2.9742	-0.0014849	-3.6975	-0.0018461	499.271356214281	89.338	1.5163	87.207	86.846	88.362	-2.1309					90	29	4	0	0	0	0.14998	2	5478	5478;5490		84.916	5.4645	1	2067700			35357	6557	29111	29138	38800;38801	38800					0.03299882339626947
LSKMGITTF	9	Unmodified	_LSKMGITTF_					0	0	0		nc|ENSG00000165383|Q8N456-2|LRRC18;ENSG00000165383|ENST00000374160|LRRC18	nc|ENSG00000165383|Q8N456-2|LRRC18	nc|ENSG00000165383|Q8N456-2|LRRC18	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.2736511230469	2	499.272978	996.531403	0.34489	0.0001722	-4.0998	-0.0020469	-3.7549	-0.0018747	499.2708039159593	89.798	1.4152	87.223	86.95	88.365	-2.575					83	27	4	0	0	0	0.2422	1	7702	7702		69.628	14.851	1	2048000			35358	6557	29111	29138	38802	38802					0.03299882339626947
LSKMPHSVP	9	Unmodified	_LSKMPHSVP_					0	0	0		ENSG00000082438|ENST00000652658|COBLL1;nc|ENSG00000082438|Q53SF7-3|COBLL1;nc|ENSG00000082438|Q53SF7-2|COBLL1;ENST00000493713.1_1_2:165549153-165551207:-|nuORF	ENSG00000082438|ENST00000652658|COBLL1	ENSG00000082438|ENST00000652658|COBLL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.2682189941406	2	498.27077	994.526987	0.43244	0.00021547	-1.5457	-0.0007702	-1.1133	-0.00055472	498.26989989499106	32.13	0.90043	29.435	28.914	29.814	-2.6954					52	30	2	0	0	0	0.72268	1	748	748		10.265	1.4429	1	19898			35359	1678	29112	29139	38803	38803					0.029504179167247457
LSKMVLFGF	9	Unmodified	_LSKMVLFGF_					0	0	0			REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|306|2|anti-sense	REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|306|2|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	521.2975463867188	2	521.293714	1040.57287	1.4159	0.00073811	2.8626	0.0014922	4.2785	0.0022303	521.2951817501133	137.78	3.6292	137.78	135.69	139.32	0					166	76	5	0	0	0	0.29717	1	16061	16061		63.306	7.8021	1	5949400	+		35360	28499	29113	29140	38804	38804					0.05421063098947343
LSKMWGVK	8	Unmodified	_LSKMWGVK_					0	0	0			REV__ENST00000560530.5_1_15:48444180-48444252:-|nuORF	REV__ENST00000560530.5_1_15:48444180-48444252:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	474.7724609375	2	474.770406	947.526258	-0.25571	-0.0001214	3.373	0.0016014	3.1173	0.00148	474.77191380155364	60.046	0.78674	60.046	59.647	60.434	0					31	19	3	0	0	0	0.56195	1	5214	5214		71.296	13.484	1	1374100	+		35361	27620	29114	29141	38805	38805					0.050396232676803265
LSKMWGVK	8	Unmodified	_LSKMWGVK_					0	0	0			REV__ENST00000560530.5_1_15:48444180-48444252:-|nuORF	REV__ENST00000560530.5_1_15:48444180-48444252:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	474.770406	947.526258	-0.25571	-0.0001214	3.373	0.0016014	3.1173	0.00148	474.77191380155364	60.046	0.78674	60.046	59.647	60.434	0	0	0	NaN	71.296	31	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1374100	+		35362	27620	29114	29141							0.050396232676803265
LSKNNILPK	9	Unmodified	_LSKNNILPK_					0	0	0			REV__tr|A0A7D7A6J5|A0A7D7A6J5_9CLOTDUF1836domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10990PE=4SV=1	REV__tr|A0A7D7A6J5|A0A7D7A6J5_9CLOTDUF1836domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10990PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.8041381835938	2	513.818941	1025.62333	1.6487	0.00084713	0.24777	0.00012731	1.8965	0.00097444	513.8190362061434	93.142	0.37871	93.142	92.926	93.305	0					14	8	2	0	0	0	0.027418	1	10079	10079		62.107	12.666	1	356000	+		35363	32659	29115	29142	38806	38806					0.11154308748314179
LSKQIGQFL	9	Unmodified	_LSKQIGQFL_					0	0	0		ENSG00000003989|ENST00000494857|SLC7A2;nc|ENSG00000003989|P52569-2|SLC7A2;nc|ENSG00000003989|P52569-3|SLC7A2	ENSG00000003989|ENST00000494857|SLC7A2	ENSG00000003989|ENST00000494857|SLC7A2	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3040161132812	2	517.305667	1032.59678	0.50544	0.00026147	-0.58019	-0.00030013	-0.074744	-3.8665E-05	517.3051776406942	124.31	0.98633	124.07	123.68	124.67	-0.23193					45	19	3	0	0	0	0.53483	1	12073	12073		39.253	3.6345	1	148560			35364	823	29116	29143	38807	38807					0.08178619856994374
LSKQLHYL	8	Unmodified	_LSKQLHYL_					0	0	0			REV__nc|ENSG00000135336|Q9UBD5-3|ORC3	REV__nc|ENSG00000135336|Q9UBD5-3|ORC3	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2901611328125	2	501.292559	1000.57057	-1.4695	-0.00073667	-2.6975	-0.0013522	-4.167	-0.0020889	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.75241	1	11030	11030		25.45	2.4077	1	97838	+		35365	19276	29117	29144	38808	38808					0.07030350685499798
LSKQYQLKE	9	Unmodified	_LSKQYQLKE_					0	0	0			REV__tr|A0A553SSM7|A0A553SSM7_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_03370PE=4SV=1	REV__tr|A0A553SSM7|A0A553SSM7_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_03370PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	569.2868041992188	2	568.819138	1135.62372	-0.10068	-5.7268E-05	-1.2771	-0.00072643	-1.3778	-0.0007837	568.8182146006757	104.03	1.3112	101.91	101.38	102.69	-2.1192					44	24	3	0	0	0	0.027462	1	9382	9382		27.882	0	1	128720	+		35366	30851	29118	29145	38809	38809					0.06133683677512636
LSKRKPVD	8	Unmodified	_LSKRKPVD_					0	0	0			REV__nc|ENSG00000137843|Q9NQU5-2|PAK6	REV__nc|ENSG00000137843|Q9NQU5-2|PAK6	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.7900695800781	2	471.790184	941.565815	-0.27693	-0.00013065	0.3002	0.00014163	0.023272	1.0979E-05	471.7901851726523	50.767	1.5217	47.594	47.205	48.726	-3.1734					74	29	4	0	0	0	0.64026	1	2943	2943		55.504	0	1	529240	+		35367	19489	29119	29146	38810	38810					0.0926946654275298
LSKRLRKG	8	Unmodified	_LSKRLRKG_					0	0	0		ENSG00000173894|ENST00000310942|CBX2;nc|ENSG00000173894|Q14781-2|CBX2	ENSG00000173894|ENST00000310942|CBX2	ENSG00000173894|ENST00000310942|CBX2	MULTI-SECPEP	OvCa9_classI_Rep2	2	480.2919921875	2	479.319443	956.624333	1.5203	0.00072872	0.65406	0.0003135	2.1744	0.0010422	479.31956663298865	90.305	0.59207	89.003	88.83	89.422	-1.302					16	11	2	0	0	0	0.028476	1	8017	8017		18.324	1.8513	1	18879			35368	7424	29120	29147	38811	38811					0.14428567907896195
LSKRPCTLN	9	Unmodified	_LSKRPCTLN_					0	0	0		nc|ENSG00000129993|O75081-4|CBFA2T3;ENSG00000129993|ENST00000268679|CBFA2T3;nc|ENSG00000129993|O75081-2|CBFA2T3	nc|ENSG00000129993|O75081-4|CBFA2T3	nc|ENSG00000129993|O75081-4|CBFA2T3	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.283203125	2	516.286951	1030.55935	-0.3347	-0.0001728	-3.4759	-0.0017946	-3.8106	-0.0019674	516.2849698753241	83.368	1.0235	80.705	80.388	81.412	-2.6629					69	20	5	0	0	0	0.3076	1	6953	6953		62.107	1.9892	1	908590			35369	3951	29121	29148	38812	38812					0.04529205319749963
LSKRPGKTTP	10	Unmodified	_LSKRPGKTTP_					0	0	0			REV__ENST00000606367.1_1_6:31165196-31165424:-|nuORF	REV__ENST00000606367.1_1_6:31165196-31165424:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	542.2905883789062	2	542.827298	1083.64004	-1.0602	-0.00057553	3.5041	0.0019021	2.4439	0.0013266	542.8284656967929	75.015	0.61992	73.044	72.692	73.312	-1.9711					13	11	2	0	0	0	0.026606	1	6180	6180		52.937	23.767	1	61558	+		35370	28076	29122	29149	38813	38813					0.10156809634258934
LSKSYSSSSN	10	Unmodified	_LSKSYSSSSN_					0	0	0		ENSG00000184588|ENST00000341517|PDE4B	ENSG00000184588|ENST00000341517|PDE4B	ENSG00000184588|ENST00000341517|PDE4B	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.7857055664062	2	530.251286	1058.48802	-0.24071	-0.00012764	1.1794	0.00062539	0.93872	0.00049776	530.2518953365363	30.014	0.45069	30.014	29.735	30.186	0					16	8	3	0	0	0	0.02706	1	1093	1093		17.468	0	1	169460			35371	8174	29123	29150	38814	38814					-0.03888635903922477
LSKTSFKRGE	10	Unmodified	_LSKTSFKRGE_					0	0	0		tr|A0A7D6VPD5|A0A7D6VPD5_9CLOTserine-typeD-Ala-D-AlacarboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18355PE=3SV=1	tr|A0A7D6VPD5|A0A7D6VPD5_9CLOTserine-typeD-Ala-D-AlacarboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18355PE=3SV=1	tr|A0A7D6VPD5|A0A7D6VPD5_9CLOTserine-typeD-Ala-D-AlacarboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18355PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	577.3638305664062	2	576.822212	1151.62987	-0.22544	-0.00013004	3.6138	0.0020845	3.3884	0.0019545	576.8242104807226	115.6	0.69254	114.21	113.97	114.66	-1.3977					18	13	2	0	0	0	0.027028	1	10745	10745		31.53	10.583	1	16909			35372	34762	29124	29151	38815	38815					0.06012201909038595
LSKTSFKRGE	10	Unmodified	_LSKTSFKRGE_					0	0	0		tr|A0A7D6VPD5|A0A7D6VPD5_9CLOTserine-typeD-Ala-D-AlacarboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18355PE=3SV=1	tr|A0A7D6VPD5|A0A7D6VPD5_9CLOTserine-typeD-Ala-D-AlacarboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18355PE=3SV=1	tr|A0A7D6VPD5|A0A7D6VPD5_9CLOTserine-typeD-Ala-D-AlacarboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18355PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	576.822212	1151.62987	-1.0565	-0.00060941	3.6167	0.0020862	2.5602	0.0014768	576.8243585723224	115.26	0.54272	114.21	114	114.54	-1.055	0.0034038	-0.00034869	NaN	18.262	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10638			35373	34762	29124	29151							0.06012201909038595
LSKVKQAVL	9	Unmodified	_LSKVKQAVL_					0	0	0			REV__ENST00000397656.8_1_12:111066004-111085694:+|nuORF;REV__ENST00000460357.1_1_12:111082772-111083018:+|nuORF	REV__ENST00000397656.8_1_12:111066004-111085694:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	493.3241271972656	2	493.32386	984.633166	-0.72862	-0.00035945	0.48404	0.00023879	-0.24458	-0.00012066	493.32396108529844	115.77	1.6299	114.73	114.45	116.08	-1.0414					67	32	3	0	0	0	0.33652	1	8621	8621		58.782	9.3404	1	204450	+		35374	23190;26080	29125	29152	38816	38816					0.14023496753691234
LSKYKALLK	9	Unmodified	_LSKYKALLK_					0	0	0			REV__ENST00000561014.1_1_15:49531438-49610381:+|nuORF	REV__ENST00000561014.1_1_15:49531438-49610381:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.3126220703125	2	532.347335	1062.68012	1.087	0.00057869	0.60762	0.00032346	1.6947	0.00090215	532.3476256296161	83.296	0.72266	83.296	83.078	83.801	0					34	16	3	0	0	0	0.027232	1	8693	8693		76.774	34.378	1	739570	+		35375	20506	29126	29153	38817	38817					0.1512835630483096
LSLAAGVEL	9	Unmodified	_LSLAAGVEL_					0	0	0		tr|A0A553SN33|A0A553SN33_NIACIXanthinedehydrogenasefamilyproteinmolybdopterin-bindingsubunitOS=NialliacirculansOX=1397GN=CEQ21_23725PE=4SV=1	tr|A0A553SN33|A0A553SN33_NIACIXanthinedehydrogenasefamilyproteinmolybdopterin-bindingsubunitOS=NialliacirculansOX=1397GN=CEQ21_23725PE=4SV=1	tr|A0A553SN33|A0A553SN33_NIACIXanthinedehydrogenasefamilyproteinmolybdopterin-bindingsubunitOS=NialliacirculansOX=1397GN=CEQ21_23725PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.7585754394531	2	436.758018	871.501483	-0.28858	-0.00012604	0.51624	0.00022547	0.22765	9.9429E-05	436.75808419558217	82.345	0.73053	79.663	79.346	80.076	-2.683					43	14	4	0	0	0	0.068524	1	6813	6813		108.09	12.272	1	494020			35376	33903	29127	29154	38818	38818					0.060592666659431416
LSLAAGVEL	9	Unmodified	_LSLAAGVEL_					0	0	0		tr|A0A553SN33|A0A553SN33_NIACIXanthinedehydrogenasefamilyproteinmolybdopterin-bindingsubunitOS=NialliacirculansOX=1397GN=CEQ21_23725PE=4SV=1	tr|A0A553SN33|A0A553SN33_NIACIXanthinedehydrogenasefamilyproteinmolybdopterin-bindingsubunitOS=NialliacirculansOX=1397GN=CEQ21_23725PE=4SV=1	tr|A0A553SN33|A0A553SN33_NIACIXanthinedehydrogenasefamilyproteinmolybdopterin-bindingsubunitOS=NialliacirculansOX=1397GN=CEQ21_23725PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	436.758018	871.501483	0.98097	0.00042845	-0.35903	-0.00015681	0.62194	0.00027164	436.7577819070538	81.58	1.4389	79.931	79.365	80.804	-1.6485	0.21298	-0.00063474	NaN	108.09	67	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222750			35377	33903	29127	29154							0.060592666659431416
LSLAAGVEL	9	Unmodified	_LSLAAGVEL_					0	0	0		tr|A0A553SN33|A0A553SN33_NIACIXanthinedehydrogenasefamilyproteinmolybdopterin-bindingsubunitOS=NialliacirculansOX=1397GN=CEQ21_23725PE=4SV=1	tr|A0A553SN33|A0A553SN33_NIACIXanthinedehydrogenasefamilyproteinmolybdopterin-bindingsubunitOS=NialliacirculansOX=1397GN=CEQ21_23725PE=4SV=1	tr|A0A553SN33|A0A553SN33_NIACIXanthinedehydrogenasefamilyproteinmolybdopterin-bindingsubunitOS=NialliacirculansOX=1397GN=CEQ21_23725PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	436.758018	871.501483	-0.32226	-0.00014075	1.3406	0.00058553	1.0184	0.00044478	436.758566760696	81.858	1.2484	79.561	79.182	80.431	-2.2963	-0.1571	0.00084994	NaN	108.09	63	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	615150			35378	33903	29127	29154							0.060592666659431416
LSLAPAWLL	9	Unmodified	_LSLAPAWLL_					0	0	0			REV__ENSG00000148204|ENST00000373631|CRB2	REV__ENSG00000148204|ENST00000373631|CRB2	MULTI-MSMS	OvCa9_classI_Rep2	2	492.2966613769531	2	492.299853	982.585153	0.468	0.0002304	-4.4619	-0.0021966	-3.9939	-0.0019662	492.2973790880381	97.748	0.92992	96.789	96.414	97.344	-0.95856					47	18	4	0	0	0	0.34496	1	8869	8869		57.811	1.0902	1	309990	+		35379	20093	29128	29155	38819	38819					0.09316422833660454
LSLAPAWLL	9	Unmodified	_LSLAPAWLL_					0	0	0			REV__ENSG00000148204|ENST00000373631|CRB2	REV__ENSG00000148204|ENST00000373631|CRB2	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.2974548339844	2	492.299853	982.585153	-0.16434	-8.0907E-05	-4.1006	-0.0020187	-4.2649	-0.0020996	492.29761743321455	99.146	1.1307	96.821	96.536	97.667	-2.3253					35	21	2	0	0	0	0.34496	1	8843	8843		57.811	3.035	1	367930	+		35380	20093	29128	29155	38820	38820					0.09316422833660454
LSLARPLVSVV	11	Unmodified	_LSLARPLVSVV_					0	0	0			REV__ENST00000514462.1_1_5:43505848-43515051:-|nuORF	REV__ENST00000514462.1_1_5:43505848-43515051:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	577.3682250976562	2	577.368798	1152.72304	-1.6942	-0.00097816	1.3228	0.00076377	-0.37133	-0.00021439	577.3694914290571	127.2	2.4686	125.77	125.44	127.91	-1.4357					130	48	5	0	0	0	0.63561	1	12194	12194		41.427	0.64845	1	1097800	+		35381	21685	29129	29156	38821	38821					0.1527912636227029
LSLCLTLLR	9	Unmodified	_LSLCLTLLR_					0	0	0			REV__ENST00000373277.8_1_9:130500674-130500788:-|nuORF	REV__ENST00000373277.8_1_9:130500674-130500788:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7791748046875	2	516.31772	1030.62089	-0.95407	-0.0004926	1.5448	0.00079763	0.59078	0.00030503	516.3184770031858	42.264	0.30466	42.264	42.068	42.372	0					12	6	2	0	0	0	0.027462	1	2687	2687		35.618	1.4457	1	131660	+		35382	25035	29130	29157	38822	38822					0.10680137018994174
LSLCNRNN	8	Unmodified	_LSLCNRNN_					0	0	0			REV__nc|ENSG00000196954|P49662-4|CASP4	REV__nc|ENSG00000196954|P49662-4|CASP4	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.2496337890625	2	467.232176	932.449799	0.34902	0.00016307	-2.4104	-0.0011262	-2.0614	-0.00096315	467.23061867495824	58.08	0.21293	58.08	57.899	58.112	0					6	4	2	0	0	0	0.028476	1	4907	4907		45.952	15.448	1	76867	+		35383	22879	29131	29158	38823	38823					-0.01912800299612627
LSLCRLRY	8	Unmodified	_LSLCRLRY_					0	0	0		ENST00000254321.9_1_19:12035883-12036036:+|nuORF	ENST00000254321.9_1_19:12035883-12036036:+|nuORF	ENST00000254321.9_1_19:12035883-12036036:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.2708740234375	2	512.292037	1022.56952	1.1764	0.00060265	-1.7807	-0.00091223	-0.60431	-0.00030958	512.2907138378529	129.36	0.64203	127.9	127.6	128.24	-1.4565					16	12	2	0	0	0	0.028476	1	12410	12410		18.324	0.95945	1	20314			35384	9808	29132	29159	38824	38824					0.059138130449582604
LSLCRPGLE	9	Unmodified	_LSLCRPGLE_					0	0	0		ENST00000403496.6_1_1:32705729-32705810:-|nuORF	ENST00000403496.6_1_1:32705729-32705810:-|nuORF	ENST00000403496.6_1_1:32705729-32705810:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	494.2703552246094	2	494.268227	986.521901	1.3692	0.00067677	1.8281	0.00090358	3.1973	0.0015803	494.26897651326505	133.1	1.5872	133.1	132.8	134.38	0					98	33	4	0	0	0	0.35444	1	15508	15508		56.721	5.3856	1	1480100			35385	11440	29133	29160	38825	38825					0.028101140541025416
LSLCRPSVL	9	Unmodified	_LSLCRPSVL_					0	0	0			REV__PXDNL|p.S699C|1|0.13|ENSG00000147485|chr8:51409528-51409528|G/C|missense_variant	REV__PXDNL|p.S699C|1|0.13|ENSG00000147485|chr8:51409528-51409528|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	494.2852783203125	2	494.28642	986.558287	-0.096989	-4.7941E-05	-0.33924	-0.00016768	-0.43623	-0.00021562	494.28606431515385	83.612	2.4718	82.013	81.369	83.841	-1.5988					133	49	4	0	0	0	0.14998	2	7174	7174;7187		84.916	5.4645	1	1379300	+		35386	29325	29134	29161	38826;38827	38826					0.0644699095081478
LSLCRPSVL	9	Unmodified	_LSLCRPSVL_					0	0	0			REV__PXDNL|p.S699C|1|0.13|ENSG00000147485|chr8:51409528-51409528|G/C|missense_variant	REV__PXDNL|p.S699C|1|0.13|ENSG00000147485|chr8:51409528-51409528|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	494.2868347167969	2	494.28642	986.558287	-1.2403	-0.00061306	0.87686	0.00043342	-0.36342	-0.00017964	494.28670132933	84.122	2.6507	81.861	81.346	83.997	-2.261					153	54	4	0	0	0	0.14739	1	4853	4853		85.359	11.104	1	2419900	+		35387	29325	29134	29161	38828	38828					0.0644699095081478
LSLDEIIK	8	Unmodified	_LSLDEIIK_					0	0	0		tr|A0A7D7A436|A0A7D7A436_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00080PE=4SV=1	tr|A0A7D7A436|A0A7D7A436_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00080PE=4SV=1	tr|A0A7D7A436|A0A7D7A436_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00080PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	465.2861633300781	2	465.778951	929.543348	1.4736	0.00068639	-4.1229	-0.0019204	-2.6493	-0.001234	465.77686081157424	125.74	0.94041	124.68	123.79	124.73	-1.0519					27	17	2	0	0	0	0.028476	1	9791	9791		71.877	5.98	1	12932			35388	36135	29135	29162	38829	38829					0.07575822354465345
LSLDGIRTV	9	Unmodified	_LSLDGIRTV_					0	0	0			REV__ENSG00000124143|ENST00000373345|ARHGAP40	REV__ENSG00000124143|ENST00000373345|ARHGAP40	MULTI-MSMS	OvCa9_classI_Rep2	2	487.28564453125	2	487.287474	972.560395	-0.58577	-0.00028544	-0.5191	-0.00025295	-1.1049	-0.00053839	487.2873954078766	48.511	1.8372	45.75	45.428	47.266	-2.7603					98	36	4	0	0	0	0.28934	1	3072	3072		64.207	3.2353	1	1108600	+		35389	18664	29136	29163	38830	38830					0.07301742960282809
LSLDKPLQL	9	Unmodified	_LSLDKPLQL_					0	0	0		nc|nan|Q7Z2V1|C16orf82	nc|nan|Q7Z2V1|C16orf82	nc|nan|Q7Z2V1|C16orf82	MULTI-MSMS	OvCa9_classI_Rep3	3	513.8141479492188	2	513.813325	1025.6121	-0.52087	-0.00026763	0.12081	6.2073E-05	-0.40006	-0.00020556	513.8133179520387	96.39	1.8725	94.561	93.78	95.652	-1.8286					114	36	4	0	0	0	0.13504	1	6368	6368		87.696	7.9839	1	1310500			35390	15418	29137	29164	38831	38831					0.10031486654179389
LSLDRVQL	8	Unmodified	_LSLDRVQL_					0	0	0			REV__ENSG00000142632|ENST00000270747|ARHGEF19	REV__ENSG00000142632|ENST00000270747|ARHGEF19	MULTI-MSMS	OvCa99_classI_Rep5	1	472.28399658203125	2	472.282192	942.549831	-0.066175	-3.1253E-05	0.38813	0.00018331	0.32196	0.00015206	472.2826131128306	71.489	0.56805	71.489	71.267	71.835	0					36	13	4	0	0	0	0.40148	1	6916	6916		87.754	0	1	2389700	+		35391	19798	29138	29165	38832	38832					0.0762576030585933
LSLDVVSGGEL	11	Unmodified	_LSLDVVSGGEL_					0	0	0		tr|A0A553SL38|A0A553SL38_NIACIDiaminopimelatedecarboxylaseOS=NialliacirculansOX=1397GN=lysAPE=3SV=1	tr|A0A553SL38|A0A553SL38_NIACIDiaminopimelatedecarboxylaseOS=NialliacirculansOX=1397GN=lysAPE=3SV=1	tr|A0A553SL38|A0A553SL38_NIACIDiaminopimelatedecarboxylaseOS=NialliacirculansOX=1397GN=lysAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2733154296875	2	544.795329	1087.5761	2.7516	0.001499	-0.59839	-0.000326	2.1532	0.001173	544.7949552504436	89.45	0.52837	89.45	89.235	89.763	0					31	12	4	0	0	0	0.025529	1	9574	9574		77.318	7.69	1	1923300			35392	33681	29139	29166	38833	38833					0.03581984686684336
LSLEAQGIK	9	Unmodified	_LSLEAQGIK_					0	0	0		ENSG00000158417|ENST00000289371|EIF5B;TXNDC9-EIF5B|1|fusion	ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.7826843261719	2	479.782025	957.549496	-0.28331	-0.00013593	0.21461	0.00010296	-0.068703	-3.2963E-05	479.7818994579763	48.274	1.241	45.167	44.888	46.129	-3.1077					33	23	2	0	0	0	0.075543	1	2651	2651		104.06	7.8664	1	411610			35393	5950	29140	29167	38834	38834					0.0690234058599799
LSLEGKPL	8	Unmodified	_LSLEGKPL_					0	0	0		ENSG00000154783|ENST00000285046|FGD5;FGD5|p.T545Ifs*32|1|0.24|ENSG00000154783|chr3:14820705-14820705|C/-|frameshift_variant	ENSG00000154783|ENST00000285046|FGD5	ENSG00000154783|ENST00000285046|FGD5	MULTI-MSMS	OvCa99_classI_Rep5	1	428.76190185546875	2	428.760561	855.506569	2.3039	0.00098783	0.10891	4.6694E-05	2.4128	0.0010345	428.76048865380704	78.313	1.4745	78.313	77.801	79.276	0					88	35	5	0	0	0	0.42649	2	7924	7924;7954		84.916	2.675	1	12035000			35394	5755	29141	29168	38835;38836	38835					0.07303570528563341
LSLELKEV	8	Unmodified	_LSLELKEV_					0	0	0		nc|ENSG00000143420|O43768-8|ENSA	nc|ENSG00000143420|O43768-8|ENSA	nc|ENSG00000143420|O43768-8|ENSA	MULTI-MSMS	OvCa99_classI_Rep5	1	465.78057861328125	2	465.778951	929.543348	2.2442	0.0010453	0.73959	0.00034449	2.9838	0.0013898	465.77912943432483	80.206	1.5835	80.206	79.16	80.744	0					85	38	3	0	0	0	0.66057	1	8227	8227		51.335	0	1	1515800			35395	15073	29142	29169	38837	38837					0.07575822354465345
LSLENLEKI	9	Unmodified	_LSLENLEKI_					0	0	0		nc|ENSG00000198825|Q9Y2H2-4|INPP5F;ENSG00000198825|ENST00000650623|INPP5F	nc|ENSG00000198825|Q9Y2H2-4|INPP5F	nc|ENSG00000198825|Q9Y2H2-4|INPP5F	MULTI-MSMS	OvCa99_classI_Rep5	1	529.8096923828125	2	529.808239	1057.60193	1.324	0.00070148	0.2553	0.00013526	1.5793	0.00083674	529.8083199282983	119.63	0.96925	119.63	119.33	120.3	0					86	23	5	0	0	0	0.0044061	3	13746	13718;13746;13770		228.31	19.113	1	16433000			35396	8883	29143	29170	38838;38839;38840	38839					0.07542878928961727
LSLENLEKI	9	Unmodified	_LSLENLEKI_					0	0	0		nc|ENSG00000198825|Q9Y2H2-4|INPP5F;ENSG00000198825|ENST00000650623|INPP5F	nc|ENSG00000198825|Q9Y2H2-4|INPP5F	nc|ENSG00000198825|Q9Y2H2-4|INPP5F	MULTI-MSMS	OvCa9_classI_Rep2	2	529.8090209960938	2	529.808239	1057.60193	-1.9861	-0.0010522	1.7049	0.00090325	-0.28122	-0.00014899	529.8090229846803	119.94	1.6785	119.77	119.5	121.17	-0.17138					110	33	6	0	0	0	0.00038699	1	11542	11542		243.29	19.411	1	1353600			35397	8883	29143	29170	38841	38841					0.07542878928961727
LSLENLEKI	9	Unmodified	_LSLENLEKI_					0	0	0		nc|ENSG00000198825|Q9Y2H2-4|INPP5F;ENSG00000198825|ENST00000650623|INPP5F	nc|ENSG00000198825|Q9Y2H2-4|INPP5F	nc|ENSG00000198825|Q9Y2H2-4|INPP5F	MULTI-MSMS	OvCa9_classI_Rep3	3	529.80859375	2	529.808239	1057.60193	1.1775	0.00062383	-1.7134	-0.00090776	-0.5359	-0.00028393	529.8073101508535	120.83	2.5422	119.8	119.46	122	-1.0271					124	48	5	0	0	0	0.0079674	3	9232	9209;9232;9276		199.89	17.364	1	1784400			35398	8883	29143	29170	38842;38843;38844	38843					0.07542878928961727
LSLENLEKI	9	Unmodified	_LSLENLEKI_					0	0	0		nc|ENSG00000198825|Q9Y2H2-4|INPP5F;ENSG00000198825|ENST00000650623|INPP5F	nc|ENSG00000198825|Q9Y2H2-4|INPP5F	nc|ENSG00000198825|Q9Y2H2-4|INPP5F	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.8074951171875	2	529.808239	1057.60193	-1.312	-0.00069511	0.84604	0.00044824	-0.46596	-0.00024687	529.8086198814409	121.17	2.4767	119.82	119.54	122.02	-1.3479					138	48	5	0	0	0	0.0070154	3	11426	11394;11402;11426		199.89	17.522	1	1825800			35399	8883	29143	29170	38845;38846;38847	38847					0.07542878928961727
LSLENNRI	8	Unmodified	_LSLENNRI_					0	0	0		nc|ENSG00000131951|Q6ZRR7-2|LRRC9;nc|ENSG00000131951|Q6ZRR7|LRRC9;ENSG00000131951|ENST00000570145|LRRC9	nc|ENSG00000131951|Q6ZRR7-2|LRRC9	nc|ENSG00000131951|Q6ZRR7-2|LRRC9	MULTI-MSMS	OvCa99_classI_Rep5	1	479.76904296875	2	479.769448	957.524344	0.17034	8.1723E-05	0.83113	0.00039875	1.0015	0.00048047	479.7691683777915	32.724	0.58446	32.724	32.503	33.087	0					17	11	3	0	0	0	0.56195	1	1457	1457		71.296	2.5089	1	1272200			35400	4101	29144	29171	38848	38848					0.04388285783431911
LSLEQSRR	8	Unmodified	_LSLEQSRR_					0	0	0			REV__ENST00000481053.5_1_9:139259475-139262364:-|nuORF	REV__ENST00000481053.5_1_9:139259475-139262364:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2958984375	2	494.780348	987.546142	-0.3702	-0.00018317	-4.3656	-0.00216	-4.7358	-0.0023432	494.77789285092746	56.348	0.32452	56.348	56.135	56.459	0					11	7	2	0	0	0	0.028476	1	4670	4670		56.721	0	1	156510	+		35401	22666	29145	29172	38849	38849					0.05187090532001548
LSLFNLNVANL	11	Unmodified	_LSLFNLNVANL_					0	0	0		nc|ENSG00000138642|Q8IVU3-2|HERC6;ENSG00000138642|ENST00000264346|HERC6	nc|ENSG00000138642|Q8IVU3-2|HERC6	nc|ENSG00000138642|Q8IVU3-2|HERC6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	406.2334289550781	3	406.567801	1216.68157	1.3414	0.00054535	2.7575	0.0011211	4.0988	0.0016665	406.5688613937525	57.71	0.81132	54.365	54.138	54.949	-3.3449					25	15	2	0	0	0	0.025508	1	3754	3754		21.78	0	1	41949			35402	4703	29146	29173	38850	38850					0.0818994560295323
LSLGALLSKL	10	Unmodified	_LSLGALLSKL_					0	0	0			REV__ENSG00000164880|ENST00000404767|INTS1	REV__ENSG00000164880|ENST00000404767|INTS1	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.28045654296875	2	507.831517	1013.64848	-0.36694	-0.00018634	-0.093236	-4.7348E-05	-0.46018	-0.00023369	507.83117226322605	72.881	0.79155	70.393	70.183	70.974	-2.4873					27	15	3	0	0	0	0.026681	1	3566	3566		36.447	6.129	1	29828	+		35403	21030	29147	29174	38851	38851					0.14220363550907678
LSLGCRVG	8	Unmodified	_LSLGCRVG_					0	0	0		L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|41|1|sense	L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|41|1|sense	L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|41|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	403.238525390625	2	402.723455	803.432358	1.1883	0.00047854	-4.0239	-0.0016205	-2.8356	-0.001142	402.7211304899643	66.596	0.37358	66.596	66.288	66.661	0					10	8	2	0	0	0	0.028476	1	6178	6178		20.482	1.1219	1	190500			35404	14659	29148	29175	38852	38852					0.02277904165396194
LSLGFFSLL	9	Unmodified	_LSLGFFSLL_					0	0	0		ENSG00000027847|ENST00000029410|B4GALT7	ENSG00000027847|ENST00000029410|B4GALT7	ENSG00000027847|ENST00000029410|B4GALT7	MULTI-MSMS	OvCa9_classI_Rep2	2	498.7901611328125	2	498.791861	995.569169	-0.69611	-0.00034721	-3.8847	-0.0019376	-4.5808	-0.0022849	498.7898766980179	115.24	3.0674	115.12	114.7	117.77	-0.11777					207	61	7	0	0	0	0.22961	1	11067	11067		71.296	4.8664	1	2910400			35405	1056	29149	29176	38853	38853					0.07120716596762122
LSLGIPQGI	9	Unmodified	_LSLGIPQGI_					0	0	0			REV__tr|A0A553STD3|A0A553STD3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04835PE=4SV=1	REV__tr|A0A553STD3|A0A553STD3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04835PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	449.27325439453125	2	449.273835	896.533118	1.5034	0.00067545	0.42071	0.00018902	1.9241	0.00086447	449.27401693784	154.54	0.55437	154.54	154.22	154.78	0					16	10	2	0	0	0	0.44568	1	18109	18109		47.657	1.7054	1	45121	+		35406	30951	29150	29177	38854	38854					0.08071259419898524
LSLGNPLLKL	10	Unmodified	_LSLGNPLLKL_					0	0	0		tr|A0A553SSU3|A0A553SSU3_NIACIGHKLdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03710PE=4SV=1	tr|A0A553SSU3|A0A553SSU3_NIACIGHKLdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03710PE=4SV=1	tr|A0A553SSU3|A0A553SSU3_NIACIGHKLdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03710PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.8118896484375	2	534.344792	1066.67503	-1.7065	-0.00091187	0.86355	0.00046144	-0.84297	-0.00045044	534.3452256191102	93.188	0.59637	90.681	90.463	91.059	-2.5072					28	11	3	0	0	0	0.026464	1	8113	8113		79.713	0	1	58906			35407	34420	29151	29178	38855	38855					0.1443605244223818
LSLGRVEPL	9	Unmodified	_LSLGRVEPL_					0	0	0			REV__ENST00000451813.6_2_20:33590304-33590487:-|nuORF	REV__ENST00000451813.6_2_20:33590304-33590487:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	492.30169677734375	2	492.297842	982.581131	3.1214	0.0015366	-0.93154	-0.0004586	2.1898	0.001078	492.29725028513167	97.455	0.9856	97.455	97.18	98.165	0					58	22	4	0	0	0	0.37135	1	10735	10735		54.776	5.3348	1	4331600	+		35408	25972	29152	29179	38856	38856					0.08914333339930636
LSLHDLPHA	9	Unmodified	_LSLHDLPHA_					0	0	0		ENSG00000107731|ENST00000335350|UNC5B;nc|ENSG00000107731|Q8IZJ1-2|UNC5B	ENSG00000107731|ENST00000335350|UNC5B	ENSG00000107731|ENST00000335350|UNC5B	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.2558898925781	2	501.771991	1001.52943	-0.49501	-0.00024838	-3.761	-0.0018872	-4.256	-0.0021355	501.7701109849466	48.183	0.47123	48.183	47.984	48.455	0					15	10	2	0	0	0	0.027462	1	3510	3510		40.573	1.7665	1	699750			35409	2610	29153	29180	38857	38857					0.02872589646040069
LSLHGPALGLT	11	Unmodified	_LSLHGPALGLT_					0	0	0			REV__ENST00000311413.4_1_11:119205294-119205741:+|nuORF	REV__ENST00000311413.4_1_11:119205294-119205741:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.77783203125	2	539.816399	1077.61824	0.00055715	3.0076E-07	0.20589	0.00011114	0.20644	0.00011144	539.8163512390445	71.608	1.2659	71.608	71.308	72.574	0					82	30	4	0	0	0	0.025638	1	6941	6941		45.972	28.607	1	8415900	+		35410	24351	29154	29181	38858	38858					0.0825400488570267
LSLHQRFL	8	Unmodified	_LSLHQRFL_					0	0	0			REV__ENST00000466409.1_1_9:95874343-95874505:+|nuORF	REV__ENST00000466409.1_1_9:95874343-95874505:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.29473876953125	2	507.298176	1012.5818	0.22454	0.00011391	-1.038	-0.00052659	-0.81349	-0.00041268	507.2956796701824	30.801	1.0836	28.091	27.656	28.74	-2.7097					58	21	5	0	0	0	0.75915	1	882	882		20.482	0.48506	1	97785	+		35411	26186	29155	29182	38859	38859					0.07601172779664012
LSLIKGTKV	9	Unmodified	_LSLIKGTKV_					0	0	0		NCK1-IL20RB|2|fusion;nc|ENSG00000158092|P16333-2|NCK1;NCK1-IL20RB|3|fusion;ENSG00000158092|ENST00000481752|NCK1	NCK1-IL20RB|2|fusion	NCK1-IL20RB|2|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.7864074707031	2	479.81841	957.622267	-0.7481	-0.00035895	0.35962	0.00017255	-0.38848	-0.0001864	479.8184414836572	76.93	0.99001	75.14	74.894	75.884	-1.7894					26	18	2	0	0	0	0.027462	1	6465	6465		26.693	1.1189	1	49680			35412	15121	29156	29183	38860	38860					0.14176094379422466
LSLKAHSII	9	Unmodified	_LSLKAHSII_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|2|1|sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|2|1|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.29071044921875	2	491.30821	980.601866	0.81441	0.00040013	-0.76966	-0.00037814	0.044746	2.1984E-05	491.30764622400847	111.16	0.98541	111.02	110.68	111.67	-0.1396					35	19	2	0	0	0	0.027462	1	10549	10549		35.618	1.4457	1	90169	+		35413	28192	29157	29184	38861	38861					0.11078923719617251
LSLKALIKP	9	Unmodified	_LSLKALIKP_					0	0	0			REV__ENSG00000165972|ENST00000344280|CCDC38	REV__ENSG00000165972|ENST00000344280|CCDC38	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.913818359375	2	491.836603	981.658653	-0.36922	-0.00018159	1.375	0.00067626	1.0058	0.00049467	491.8369161229902	71.251	0.55798	71.251	71.031	71.589	0					25	13	3	0	0	0	0.027462	1	6860	6860		17.365	11.052	1	1570400	+		35414	21144	29158	29185	38862	38862					0.16708971276136708
LSLKCDLAL	9	Unmodified	_LSLKCDLAL_					0	0	0			REV__ENST00000244763.8_1_6:7288903-7288999:-|nuORF	REV__ENST00000244763.8_1_6:7288903-7288999:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.28564453125	2	488.280803	974.547053	-0.50296	-0.00024559	1.906	0.00093065	1.403	0.00068506	488.28172495750556	48.514	0.94602	45.754	45.478	46.424	-2.7603					30	18	2	0	0	0	0.027418	1	3072	3072		68.787	4.5796	1	91941	+		35415	23832	29159	29186	38863	38863					0.05876168856673303
LSLKEIAPA	9	Unmodified	_LSLKEIAPA_					0	0	0		tr|A0A553STB2|A0A553STB2_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04515PE=3SV=1	tr|A0A553STB2|A0A553STB2_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04515PE=3SV=1	tr|A0A553STB2|A0A553STB2_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04515PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	471.2882080078125	2	471.286943	940.559333	0.39577	0.00018652	0.059333	2.7963E-05	0.45511	0.00021449	471.2868394335814	72.34	7.0488	72.34	69.552	76.6	0					308	176	2	0	0	0	0.074342	1	7098	7098		104.75	6.1172	1	3030900			35416	34472	29160	29187	38864	38864					0.0866752859137705
LSLKLDNNN	9	Unmodified	_LSLKLDNNN_					0	0	0		tr|A0A7D6ZQX0|A0A7D6ZQX0_9CLOTDUF3343domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02130PE=4SV=1	tr|A0A7D6ZQX0|A0A7D6ZQX0_9CLOTDUF3343domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02130PE=4SV=1	tr|A0A7D6ZQX0|A0A7D6ZQX0_9CLOTDUF3343domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02130PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.7800903320312	2	515.780013	1029.54547	-1.0262	-0.00052928	0.64822	0.00033434	-0.37795	-0.00019494	515.7803629256006	42.002	0.94321	42.002	41.766	42.709	0					34	21	2	0	0	0	0.070405	1	2663	2663		107.01	0	1	5651100			35417	35709	29161	29188	38865	38865					0.03188251092274186
LSLKNKYTK	9	Unmodified	_LSLKNKYTK_					0	0	0			REV__tr|A0A7D7A583|A0A7D7A583_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06210PE=4SV=1	REV__tr|A0A7D7A583|A0A7D7A583_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06210PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	547.8267211914062	2	547.832049	1093.64954	-6.0457	-0.003312	-4.2018	-0.0023019	-10.248	-0.0056139	547.8295905768617	154.78	1.79	153.77	152.92	154.71	-1.0076					93	40	3	0	0	0	0.679	1	13282	13282		22.58	0	1	69775	+		35418	32629	29162	29189	38866	38866					0.1064657791978334
LSLLASCL	8	Unmodified	_LSLLASCL_					0	0	0			REV__chr17:39632091-39633883|121|21.23|0.84|4.66|+|0|None,PPP1R1B|1	REV__chr17:39632091-39633883|121|21.23|0.84|4.66|+|0|None,PPP1R1B|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	409.72222900390625	2	410.235864	818.457176	0.40894	0.00016776	1.5636	0.00064144	1.9725	0.0008092	410.2366681593727	41.802	0.17234	41.802	41.681	41.853	0					5	3	2	0	0	0	0.028476	1	2634	2634		50.025	9.4519	1	10532	+		35419	15944	29163	29190	38867	38867					0.040685392481236704
LSLLDKAY	8	Unmodified	_LSLLDKAY_					0	0	0			REV__ENSG00000198028|ENST00000301480|ZNF560	REV__ENSG00000198028|ENST00000301480|ZNF560	MULTI-SECPEP	OvCa9_classI_Rep3	3	462.7619934082031	2	461.765843	921.517133	-0.025958	-1.1987E-05	0.59709	0.00027571	0.57113	0.00026373	461.7659771285924	80.262	0.91648	77.922	77.66	78.577	-2.3399					28	17	2	0	0	0	0.028476	1	4375	4375		40.778	0	1	27522	+		35420	22980	29164	29191	38868	38868					0.05323553182995511
LSLLEYLL	8	Unmodified	_LSLLEYLL_					0	0	0		ENST00000463718.5_1_12:21428225-21457481:-|nuORF;nc|ENSG00000084453|P46721-2|SLCO1A2;ENSG00000084453|ENST00000683939|SLCO1A2	ENST00000463718.5_1_12:21428225-21457481:-|nuORF	ENST00000463718.5_1_12:21428225-21457481:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	482.2800598144531	2	482.291694	962.568835	-1.5235	-0.00073475	4.3173	0.0020822	2.7938	0.0013474	482.29387109870953	108.7	0.31205	106.97	106.87	107.18	-1.7256					10	5	2	0	0	0	0.028476	1	9974	9974		96.048	38.236	1	7430.3			35421	1714	29165	29192	38869	38869					0.08605296876885404
LSLLGAPCAFM	11	Unmodified	_LSLLGAPCAFM_					0	0	0		nc|ENSG00000138030|P50053-2|KHK;ENSG00000138030|ENST00000260598|KHK	nc|ENSG00000138030|P50053-2|KHK	nc|ENSG00000138030|P50053-2|KHK	MULTI-SECPEP	OvCa9_classI_Rep2	2	561.308837890625	2	561.787938	1121.56132	0.70702	0.0003972	-1.4261	-0.00080118	-0.7191	-0.00040398	561.7870543301823	79.765	0.95409	78.07	77.714	78.668	-1.6951					26	18	2	0	0	0	0.025298	1	6671	6671		56.721	16.148	1	26834			35422	4648	29166	29193	38870	38870					0.005404980133107529
LSLLNDLSR	9	Unmodified	_LSLLNDLSR_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;HECTD4|p.P3258Rfs*65|1|0.06|ENSG00000173064|chr12:112184791-112184792|-/C|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-2|HECTD4;HECTD4|p.R2204Ffs*29|1|0.3|ENSG00000173064|chr12:112219449-112219450|-/TGTTATGAAACTGACTGTATCTCTAAACTTAAAA|frameshift_variant	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.3017578125	2	515.798206	1029.58186	-0.3215	-0.00016583	-1.7729	-0.00091447	-2.0944	-0.0010803	515.7974005941828	51.183	0.42519	51.183	50.949	51.374	0					23	9	4	0	0	0	0.027425	1	3906	3906		46.457	0	1	632230			35423	7345	29167	29194	38871	38871					0.06825127988986424
LSLLVAPKAH	10	Unmodified	_LSLLVAPKAH_					0	0	0		ENST00000500813.6_1_4:183811617-183811782:-|nuORF	ENST00000500813.6_1_4:183811617-183811782:-|nuORF	ENST00000500813.6_1_4:183811617-183811782:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.2745971679688	2	524.829309	1047.64407	-0.47542	-0.00024951	-1.0105	-0.00053032	-1.4859	-0.00077983	524.8286610393517	75.844	0.91338	72.905	72.545	73.459	-2.9389					24	18	2	0	0	0	0.026659	1	6011	6011		45.972	3.5761	1	28357			35424	12841	29168	29195	38872	38872					0.12214899127980061
LSLLVRVK	8	Unmodified	_LSLLVRVK_					0	0	0		chr6:31729221-31729683|134|10.74|0.05|7.86|-|0|DDAH2,DDAH2|1	chr6:31729221-31729683|134|10.74|0.05|7.86|-|0|DDAH2,DDAH2|1	chr6:31729221-31729683|134|10.74|0.05|7.86|-|0|DDAH2,DDAH2|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.283203125	2	464.32112	926.627687	-0.50035	-0.00023232	-3.1318	-0.0014542	-3.6321	-0.0016865	464.3192486161499	94.795	0.39085	93.695	93.361	93.752	-1.0995					9	7	2	0	0	0	0.028476	1	8475	8475		38.806	0	1	10439			35425	511	29169	29196	38873	38873					0.16143817961892637
LSLLWEAAQ	9	Unmodified	_LSLLWEAAQ_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-12|SYNE2;nc|ENSG00000054654|Q8WXH0-5|SYNE2;nc|ENSG00000054654|Q8WXH0-6|SYNE2;nc|ENSG00000054654|Q8WXH0-11|SYNE2;nc|ENSG00000054654|Q8WXH0-10|SYNE2;nc|ENSG00000054654|Q8WXH0-4|SYNE2;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-3|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.8294067382812	2	515.782025	1029.5495	-0.089438	-4.613E-05	-3.2557	-0.0016792	-3.3452	-0.0017254	516.2794066236952	134.59	0.49411	133.47	133.21	133.7	-1.1226					11	9	2	0	0	0	0.027403	1	10845	10845		69.628	5.4204	1	7175.5			35426	1212	29170	29197	38874	38874					0.03590340585992635
LSLLYQRR	8	Unmodified	_LSLLYQRR_					0	0	0			REV__ENST00000532865.5_2_6:26365433-26365496:+|nuORF	REV__ENST00000532865.5_2_6:26365433-26365496:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.2745971679688	2	524.816733	1047.61891	-0.48083	-0.00025235	-0.5164	-0.00027102	-0.99723	-0.00052336	524.8163407070166	75.836	0.67452	72.897	72.643	73.318	-2.9389					35	13	4	0	0	0	0.028476	1	6011	6011		60.972	9.6365	1	236850	+		35427	27244	29171	29198	38875	38875					0.09700844325402613
LSLLYQRR	8	Unmodified	_LSLLYQRR_					0	0	0			REV__ENST00000532865.5_2_6:26365433-26365496:+|nuORF	REV__ENST00000532865.5_2_6:26365433-26365496:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	524.816733	1047.61891	-0.52535	-0.00027571	0.5008	0.00026283	-0.024552	-1.2885E-05	524.8164869258612	75.273	0.97421	73.34	72.885	73.859	-1.9333	0.21776	2.5447E-05	NaN	60.972	44	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146170	+		35428	27244	29171	29198							0.09700844325402613
LSLLYQRR	8	Unmodified	_LSLLYQRR_					0	0	0			REV__ENST00000532865.5_2_6:26365433-26365496:+|nuORF	REV__ENST00000532865.5_2_6:26365433-26365496:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	524.816733	1047.61891	-0.99672	-0.00052309	0.77181	0.00040506	-0.22491	-0.00011804	524.8170016378309	75.54	0.86011	73.13	72.822	73.682	-2.4106	0.0073214	0.00030991	NaN	60.972	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219930	+		35429	27244	29171	29198							0.09700844325402613
LSLNELSPD	9	Unmodified	_LSLNELSPD_					0	0	0			REV__nc|ENSG00000173698|Q8IZP9-9|ADGRG2	REV__nc|ENSG00000173698|Q8IZP9-9|ADGRG2	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.31805419921875	2	494.253297	986.492041	-0.39451	-0.00019499	0.58578	0.00028953	0.19127	9.4536E-05	494.25347202530827	103.71	0.64182	103.14	102.88	103.52	-0.57639					20	12	2	0	0	0	0.027118	1	9573	9573		84.916	18.486	1	29256	+		35430	16136	29172	29199	38876	38876					-0.0017454641023277873
LSLNIYQL	8	Unmodified	_LSLNIYQL_					0	0	0			REV__nc|ENSG00000053900|Q9UJX5-2|ANAPC4	REV__nc|ENSG00000053900|Q9UJX5-2|ANAPC4	MULTI-MSMS	OvCa9_classI_Rep2	2	482.2789306640625	2	482.279118	962.543683	-0.15422	-7.4376E-05	-0.28862	-0.0001392	-0.44284	-0.00021357	482.27892050423463	107.25	2.5562	106.94	106.62	109.18	-0.30836					127	51	5	0	0	0	0.14547	2	10043	10043;10057		133.81	7.9986	1	1468300	+		35431	16696	29173	29200	38877;38878	38877					0.060912420743079565
LSLNRASPE	9	Unmodified	_LSLNRASPE_					0	0	0		ENSG00000134538|ENST00000256958|SLCO1B1	ENSG00000134538|ENST00000256958|SLCO1B1	ENSG00000134538|ENST00000256958|SLCO1B1	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.7680969238281	2	493.766906	985.519259	-0.2047	-0.00010108	-1.2694	-0.00062678	-1.4741	-0.00072786	493.7666268521124	69.087	1.8109	65.596	65.212	67.023	-3.4902					122	36	6	0	0	0	0.1243	1	5139	5139		90.601	0.23104	1	4197400			35432	4307	29174	29201	38879	38879					0.025919819208070294
LSLPGKNKVL	10	Unmodified	_LSLPGKNKVL_					0	0	0		GEMIN4|p.L678Ffs*2|1|0.67|ENSG00000179409|chr17:746012-746013|-/AG|frameshift_variant;ENSG00000179409|ENST00000319004|GEMIN4	GEMIN4|p.L678Ffs*2|1|0.67|ENSG00000179409|chr17:746012-746013|-/AG|frameshift_variant	GEMIN4|p.L678Ffs*2|1|0.67|ENSG00000179409|chr17:746012-746013|-/AG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.2603149414062	2	534.842416	1067.67028	-3.0232	-0.001617	1.9988	0.001069	-1.0245	-0.00054792	534.8432943247778	108.22	1.0098	106.49	106.27	107.28	-1.7256					45	19	3	0	0	0	0.026681	1	9989	9989		36.447	0	1	132080			35433	7821	29175	29202	38880	38880					0.1391516829946795
LSLPGRDLI	9	Unmodified	_LSLPGRDLI_					0	0	0			REV__nc|ENSG00000089177|Q96L93-6|KIF16B	REV__nc|ENSG00000089177|Q96L93-6|KIF16B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.3170166015625	2	492.297842	982.581131	-0.16435	-8.0907E-05	-0.014924	-7.3472E-06	-0.17927	-8.8254E-05	492.29761743321455	99.146	1.1307	96.821	96.536	97.667	-2.3253					35	21	2	0	0	0	0.027353	1	8877	8877		82.241	7.9855	1	367930	+		35434	17202	29176	29203	38881	38881					0.08914333339930636
LSLPGRPALL	10	Unmodified	_LSLPGRPALL_					0	0	0		ENST00000490936.5_1_X:153578959-153579424:-|nuORF	ENST00000490936.5_1_X:153578959-153579424:-|nuORF	ENST00000490936.5_1_X:153578959-153579424:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	518.8287963867188	2	518.829309	1035.64407	-0.53777	-0.00027901	0.10892	5.6512E-05	-0.42884	-0.0002225	518.8292895658562	121.25	2.223	121.05	120.51	122.73	-0.19719					126	44	4	0	0	0	0.33376	1	11727	11727		76.774	5.4784	1	627930			35435	12708	29177	29204	38882	38882					0.12766899127996112
LSLPQPEPE	9	Unmodified	_LSLPQPEPE_					0	0	0			REV__nc|ENSG00000205744|Q8IV53-2|DENND1C	REV__nc|ENSG00000205744|Q8IV53-2|DENND1C	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.32354736328125	2	505.263665	1008.51278	-0.031469	-1.59E-05	-0.70991	-0.00035869	-0.74138	-0.00037459	505.2627188830456	106.4	0.52124	105.14	104.85	105.37	-1.267					16	9	2	0	0	0	0.027452	1	7487	7487		49.536	6.6718	1	36973	+		35436	23227	29178	29205	38883	38883					0.008860439694331035
LSLPVLEPLN	10	Unmodified	_LSLPVLEPLN_					0	0	0		UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.Q2012Sfs*13|1|0.03|ENSG00000127481|chr1:19156309-19156310|-/A|frameshift_variant;UBR4|p.M2075Wfs*25|1|0.07|ENSG00000127481|chr1:19155519-19155519|A/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-5|UBR4	UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	547.8270874023438	2	547.826432	1093.63831	-3.828	-0.0020971	3.7571	0.0020582	-0.070918	-3.8851E-05	547.8283345690601	154.13	2.0065	153.91	153.15	155.16	-0.22697					93	45	3	0	0	0	0.74374	1	15720	15720		25.574	1.0549	1	59433			35437	3833	29179	29206	38884	38884					0.0952375582564855
LSLPYLFL	8	Unmodified	_LSLPYLFL_					0	0	0		ENST00000532642.5_1_1:44443592-44443676:+|nuORF	ENST00000532642.5_1_1:44443592-44443676:+|nuORF	ENST00000532642.5_1_1:44443592-44443676:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.7682800292969	2	483.288954	964.563355	2.053	0.00099221	-4.2057	-0.0020326	-2.1527	-0.0010404	483.286796833558	91.411	0.49466	91.411	91.174	91.668	0					17	11	2	0	0	0	0.028476	1	9817	9817		23.037	7.4005	1	361670			35438	13327	29180	29207	38885	38885					0.07965618085074766
LSLQEGDLN	9	Unmodified	_LSLQEGDLN_					0	0	0		ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	ENSG00000131016|ENST00000402676|AKAP12	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2958984375	2	494.750921	987.48729	-0.34335	-0.00016987	0.14478	7.1628E-05	-0.19858	-9.8247E-05	494.7509796492351	56.403	0.40257	56.403	56.22	56.623	0					15	9	2	0	0	0	0.027459	1	4670	4670		52.937	17.785	1	290570			35439	4035	29181	29208	38886	38886					-0.0069543055299163825
LSLQLDIK	8	Unmodified	_LSLQLDIK_					0	0	0		nc|ENSG00000118557|Q8TBY8-3|PMFBP1;ENSG00000118557|ENST00000237353|PMFBP1;nc|ENSG00000118557|Q8TBY8-1|PMFBP1	nc|ENSG00000118557|Q8TBY8-3|PMFBP1	nc|ENSG00000118557|Q8TBY8-3|PMFBP1	MULTI-MSMS	OvCa9_classI_Rep2	2	465.2861328125	2	465.286943	928.559333	0.40865	0.00019014	-0.89022	-0.00041421	-0.48157	-0.00022407	465.2865075151942	125.02	3.4561	124.79	124.42	127.87	-0.2359					183	69	5	0	0	0	0.50206	1	12244	12244		77.318	2.2743	1	4060300			35440	3315	29182	29209	38887	38887					0.09219528591381732
LSLQLRGEP	9	Unmodified	_LSLQLRGEP_					0	0	0		nc|ENSG00000038532|Q2KHT3-2|CLEC16A;CLEC16A|p.Q832Rfs*57|1|0.03|ENSG00000038532|chr16:11126000-11126000|A/-|frameshift_variant;ENSG00000038532|ENST00000409790|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	MULTI-MSMS	OvCa9_classI_Rep2	2	506.79217529296875	2	506.792924	1011.57129	-1.048	-0.00053113	0.696	0.00035273	-0.35202	-0.0001784	506.7931407063647	48.213	1.4407	45.504	45.133	46.573	-2.7097					54	28	2	0	0	0	0.26076	1	3001	3001		67.494	5.3863	1	333790			35441	14868	29183	29210	38888	38888					0.06597145334581
LSLQYNYPHPH	11	Unmodified	_LSLQYNYPHPH_					0	0	0			REV__ENST00000590100.5_1_17:43345421-43345667:+|nuORF	REV__ENST00000590100.5_1_17:43345421-43345667:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.5806579589844	3	456.894688	1367.66223	-0.76913	-0.00035141	-0.60711	-0.00027739	-1.3762	-0.0006288	456.89469621652864	28.035	0.14979	28.035	27.941	28.091	0					4	2	2	0	0	0	0.025864	1	870	870		28.577	1.827	1	5291.9	+		35442	27914	29184	29211	38889	38889					-0.0068901068798368215
LSLRKIPMH	9	Unmodified	_LSLRKIPMH_					0	0	0			REV__ENST00000479835.1_1_7:75362785-75368238:-|nuORF	REV__ENST00000479835.1_1_7:75362785-75368238:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.8262939453125	2	547.828786	1093.64302	-4.8131	-0.0026367	0.4235	0.000232	-4.3896	-0.0024047	547.8288597088392	154.99	1.902	153.5	152.83	154.73	-1.4911					109	49	3	0	0	0	0.6653	1	15385	15385		24.203	1.1603	1	64964	+		35443	26442	29185	29212	38890	38890					0.09994361487451897
LSLRLRGPE	9	Unmodified	_LSLRLRGPE_					0	0	0			REV__AluSp_dup39301|chr16:1930659-1930828:-|18.54670761991336|0.0050555689467179|11.84|385.0|1|1|sense	REV__AluSp_dup39301|chr16:1930659-1930828:-|18.54670761991336|0.0050555689467179|11.84|385.0|1|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.78125	2	520.81419	1039.61383	0.17909	9.3273E-05	-2.6983	-0.0014053	-2.5192	-0.001312	520.8126718903051	67.05	0.69333	63.559	63.344	64.037	-3.4902					20	13	2	0	0	0	0.027402	1	4899	4899		47.657	0	1	26504	+		35444	15605	29186	29213	38891	38891					0.09560540462780409
LSLRSKYGL	9	Unmodified	_LSLRSKYGL_					0	0	0		tr|A0A7D6ZFG6|A0A7D6ZFG6_9CLOTTrkAfamilypotassiumuptakeproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14810PE=4SV=1	tr|A0A7D6ZFG6|A0A7D6ZFG6_9CLOTTrkAfamilypotassiumuptakeproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14810PE=4SV=1	tr|A0A7D6ZFG6|A0A7D6ZFG6_9CLOTTrkAfamilypotassiumuptakeproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14810PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	518.81005859375	2	518.811116	1035.60768	0.23501	0.00012192	-0.8243	-0.00042766	-0.5893	-0.00030573	518.8106156837061	109.74	1.9451	108.59	107.72	109.66	-1.1444					98	36	4	0	0	0	0.14998	1	7913	7913		84.916	0	1	1215100			35445	35509	29187	29214	38892	38892					0.09130022231283874
LSLSEGLLQL	10	Unmodified	_LSLSEGLLQL_					0	0	0			REV__ENST00000418170.5_1_22:35660034-35689641:+|nuORF	REV__ENST00000418170.5_1_22:35660034-35689641:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.8168334960938	2	536.816064	1071.61758	-1.1227	-0.00060267	1.1479	0.00061621	0.025224	1.354E-05	536.8165827043729	98.847	1.6425	96.521	96.024	97.667	-2.3253					78	31	4	0	0	0	0.45822	1	8796	8796		60.118	1.8883	1	371530	+		35446	17391	29188	29215	38893	38893					0.08463165446028142
LSLSEPFTQ	9	Unmodified	_LSLSEPFTQ_					0	0	0			REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4	REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.303955078125	2	511.263665	1020.51278	2.3014	0.0011766	-0.68503	-0.00035023	1.6164	0.0008264	511.2632109300387	84.846	0.6568	84.846	84.512	85.169	0					26	15	3	0	0	0	0.027462	1	8839	8839		31.53	0	1	140690	+		35447	20503	29189	29216	38894	38894					0.003340439694284214
LSLSHILSPGP	11	Unmodified	_LSLSHILSPGP_					0	0	0			REV__nc|ENSG00000168903|Q6UXE8-2|BTNL3	REV__nc|ENSG00000168903|Q6UXE8-2|BTNL3	MULTI-SECPEP	OvCa9_classI_Rep2	2	561.3084106445312	2	560.821681	1119.62881	0.54561	0.00030599	-2.0822	-0.0011678	-1.5366	-0.00086177	560.82038924033	78.667	1.0056	76.927	76.664	77.67	-1.7398					35	19	2	0	0	0	0.02557	1	6655	6655		39.253	6.4404	1	96292	+		35448	28994	29190	29217	38895	38895					0.07377987540144204
LSLSMHSLN	9	Unmodified	_LSLSMHSLN_					0	0	0		nc|ENSG00000183864|Q14106-2|TOB2;ENSG00000183864|ENST00000327492|TOB2	nc|ENSG00000183864|Q14106-2|TOB2	nc|ENSG00000183864|Q14106-2|TOB2	MULTI-SECPEP	OvCa9_classI_Rep3	3	501.2853698730469	2	501.257859	1000.50117	-0.98979	-0.00049614	3.8947	0.0019522	2.9049	0.0014561	501.2601924771015	81.877	0.45175	79.581	79.233	79.684	-2.2963					14	8	2	0	0	0	0.027448	1	4541	4541		44.117	9.9443	1	9654.9			35449	8120	29191	29218	38896	38896					0.0009352367444535048
LSLSPISR	8	Unmodified	_LSLSPISR_					0	0	0		ENST00000368102.5_1_1:159805475-159805646:-|nuORF	ENST00000368102.5_1_1:159805475-159805646:-|nuORF	ENST00000368102.5_1_1:159805475-159805646:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.21221923828125	2	436.763635	871.512717	0.47461	0.00020729	-0.43342	-0.0001893	0.041192	1.7991E-05	436.7631592296609	68.727	0.68919	65.237	65.014	65.704	-3.4902					21	13	2	0	0	0	0.028476	1	5108	5108		21.96	0	1	34795			35450	10862	29192	29219	38897	38897					0.07182088760100669
LSLSSKALD	9	Unmodified	_LSLSSKALD_					0	0	0		tr|A0A7D6VQB6|A0A7D6VQB6_9CLOTAlanine--glyoxylateaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02360PE=3SV=1	tr|A0A7D6VQB6|A0A7D6VQB6_9CLOTAlanine--glyoxylateaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02360PE=3SV=1	tr|A0A7D6VQB6|A0A7D6VQB6_9CLOTAlanine--glyoxylateaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02360PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	466.28173828125	2	467.266207	932.517862	-0.062442	-2.9177E-05	0.20765	9.7029E-05	0.14521	6.7852E-05	467.2662012991409	72.909	0.93791	70.509	69.959	70.897	-2.3999					37	17	3	0	0	0	0.027462	1	5909	5909		37.159	18.835	1	55211			35451	34837	29193	29220	38898	38898					0.04890347832053976
LSLSSPGKPAT	11	Unmodified	_LSLSSPGKPAT_					0	0	0		nc|ENSG00000121753|O60241-4|ADGRB2;nc|ENSG00000121753|O60241-3|ADGRB2;nc|ENSG00000121753|O60241-2|ADGRB2;ENSG00000121753|ENST00000373658|ADGRB2	nc|ENSG00000121753|O60241-4|ADGRB2	nc|ENSG00000121753|O60241-4|ADGRB2	MSMS	OvCa99_classI_Rep5	1	529.3026123046875	2	529.298039	1056.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.07	1	121.07	120.57	121.57	0								0	0	0	0.16975	1	13925	13925		51.193	1.1682	1				35452	3498	29194	29221	38899	38899					0.055497082691545074
LSLTPAKPIR	10	Unmodified	_LSLTPAKPIR_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.3460083007812	2	548.347866	1094.68118	-2.9821	-0.0016352	-1.1105	-0.00060896	-4.0927	-0.0022442	548.3471290060427	150.24	1.502	148.8	148.37	149.88	-1.4344					77	33	4	0	0	0	0.76627	1	14857	14857		23.042	2.0956	1	132530			35453	7345	29195	29222	38900	38900					0.1376257067372535
LSLTPARMV	9	Unmodified	_LSLTPARMV_					0	0	0		ENST00000564124.5_1_16:48580029-48653834:-|nuORF;ENSG00000102921|ENST00000262384|N4BP1	ENST00000564124.5_1_16:48580029-48653834:-|nuORF	ENST00000564124.5_1_16:48580029-48653834:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	494.28570556640625	2	494.28642	986.558287	-0.096989	-4.7941E-05	-0.33924	-0.00016768	-0.43623	-0.00021562	494.28606431515385	83.612	2.4718	82.013	81.369	83.841	-1.5988					133	49	4	0	0	0	0.12365	1	7181	7181		90.777	8.4716	1	1379300			35454	2269	29196	29223	38901	38901					0.0644699095081478
LSLVESRY	8	Unmodified	_LSLVESRY_					0	0	0			REV__tr|A0A7D6ZK28|A0A7D6ZK28_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23750PE=4SV=1	REV__tr|A0A7D6ZK28|A0A7D6ZK28_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23750PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.2830810546875	2	483.766374	965.518196	-1.1399	-0.00055146	1.1489	0.00055578	0.0089347	4.3223E-06	483.76694337696756	44.459	0.8684	41.42	41.207	42.075	-3.0385					22	16	2	0	0	0	0.028476	1	2278	2278		68.787	36.832	1	35698	+		35455	32098	29197	29224	38902	38902					0.03405767551907957
LSLVMFVR	8	Unmodified	_LSLVMFVR_					0	0	0			REV__L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|259|2|anti-sense	REV__L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|259|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	482.7450866699219	2	482.786056	963.557558	-0.35719	-0.00017245	3.7751	0.0018226	3.4179	0.0016501	482.78779642586125	51.73	1.3092	48.557	47.972	49.281	-3.1734					47	25	3	0	0	0	0.028476	1	2987	2987		25.45	7.1258	1	200550	+		35456	28541	29198	29225	38903	38903					0.07432196301783733
LSLVMFVR	8	Unmodified	_LSLVMFVR_					0	0	0			REV__L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|259|2|anti-sense	REV__L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|259|2|anti-sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	482.786056	963.557558	-1.4383	-0.00069438	4.9791	0.0024039	3.5409	0.0017095	482.78827907101635	51.34	0.79253	48.527	48.253	49.046	-2.8129	-0.014914	0.00077597	NaN	25.45	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57180	+		35457	28541	29198	29225							0.07432196301783733
LSLVVWAR	8	Unmodified	_LSLVVWAR_					0	0	0			REV__ENST00000599398.5_2_19:47760798-47760912:+|nuORF	REV__ENST00000599398.5_2_19:47760798-47760912:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.75738525390625	2	472.28982	942.565087	2.1524	0.0010165	-3.7841	-0.0017872	-1.6318	-0.00077066	472.2856881212067	77.481	0.25125	77.481	77.336	77.588	0					6	5	2	0	0	0	0.028476	1	7816	7816		7.1934	4.2639	1	79043	+		35458	27990	29199	29226	38904	38904					0.09150671893701201
LSLWKNMIMK	10	Unmodified	_LSLWKNMIMK_					0	0	0		ENST00000367822.9_1_6:135363189-135363240:-|nuORF	ENST00000367822.9_1_6:135363189-135363240:-|nuORF	ENST00000367822.9_1_6:135363189-135363240:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	632.3528442382812	2	632.351237	1262.68792	-0.26122	-0.00016518	-1.4747	-0.00093254	-1.7359	-0.0010977	632.3502430520261	100.24	0.52068	98.636	98.377	98.898	-1.6053					29	10	3	0	0	0	0.32926	1	6797	6797		77.318	4.4383	1	506800			35459	10854	29200	29227	38905	38905					0.06708424238422594
LSLWTCLF	8	Unmodified	_LSLWTCLF_					0	0	0		RTTN|p.D511Wfs*23|1|0.04|ENSG00000176225|chr18:70169014-70169015|-/AT|frameshift_variant	RTTN|p.D511Wfs*23|1|0.04|ENSG00000176225|chr18:70169014-70169015|-/AT|frameshift_variant	RTTN|p.D511Wfs*23|1|0.04|ENSG00000176225|chr18:70169014-70169015|-/AT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.2550964355469	2	491.756964	981.499375	-0.76235	-0.00037489	-2.7274	-0.0013412	-3.4897	-0.0017161	491.75503161702693	88.806	0.8907	86.203	85.882	86.773	-2.6027					50	17	5	0	0	0	0.028476	1	7569	7569		62.978	0	1	138670			35460	32794	29201	29228	38906	38906					0.007885146564717616
LSLYRFLQ	8	Unmodified	_LSLYRFLQ_					0	0	0		ENSG00000105771|ENST00000270066|SMG9;nc|ENSG00000105771|Q9H0W8-2|SMG9	ENSG00000105771|ENST00000270066|SMG9	ENSG00000105771|ENST00000270066|SMG9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.7781372070312	2	520.300384	1038.58622	0.13965	7.2662E-05	-0.80764	-0.00042022	-0.66799	-0.00034755	520.2998931954206	113.46	0.7253	112.01	111.85	112.58	-1.4461					16	14	2	0	0	0	0.028476	1	10512	10512		44.117	16.235	1	27541			35461	2497	29202	29229	38907	38907					0.06846637202556849
LSLYVQQL	8	Unmodified	_LSLYVQQL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;SYNE2|p.D1390Gfs*12|1|0.07|ENSG00000054654|chr14:64003101-64003102|-/GTCTTTCCACTGTCTCTTTTGGGCATGA|frameshift_variant	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OvCa9_classI_Rep2	2	482.2799072265625	2	482.279118	962.543683	-0.15422	-7.4376E-05	-0.28862	-0.0001392	-0.44284	-0.00021357	482.27892050423463	107.25	2.5562	106.94	106.62	109.18	-0.30836					127	51	5	0	0	0	0.083813	1	10011	10011		147.69	4.5865	1	1468300			35462	1212	29203	29230	38908	38908					0.06091242074330694
LSMDLEPPI	9	Unmodified	_LSMDLEPPI_					0	0	0			REV__ENST00000595406.1_1_19:22321288-22321780:+|nuORF	REV__ENST00000595406.1_1_19:22321288-22321780:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.76300048828125	2	507.762443	1013.51033	0.48571	0.00024663	0.13825	7.02E-05	0.62397	0.00031683	507.76242082287587	126.44	3.901	126.2	123.43	127.33	-0.2359					157	78	4	0	0	0	0.33652	2	12335	12316;12335		58.782	7.4465	1	953460	+		35463	20474	29204	29231	38909;38910	38910					0.004118722401017294
LSMDLEPPI	9	Unmodified	_LSMDLEPPI_					0	0	0			REV__ENST00000595406.1_1_19:22321288-22321780:+|nuORF	REV__ENST00000595406.1_1_19:22321288-22321780:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7623596191406	2	507.762443	1013.51033	-1.0595	-0.00053799	1.5713	0.00079784	0.51177	0.00025986	507.76307961190355	127.55	2.4705	126.11	125.15	127.62	-1.4357					106	48	4	0	0	0	0.31747	2	12191	12191;12205		60.972	4.2509	1	646950	+		35464	20474	29204	29231	38911;38912	38911					0.004118722401017294
LSMEEEVVI	9	Oxidation (M)	_LSM(Oxidation (M))EEEVVI_		LSM(1)EEEVVI		LSM(71)EEEVVI	0	0	1		DAB2IP-SLC44A4|2|fusion;DAB2IP-SLC44A4|1|fusion;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP	DAB2IP-SLC44A4|2|fusion	DAB2IP-SLC44A4|2|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	532.7632446289062	2	532.76264	1063.51073	0.13559	7.2236E-05	1.0368	0.00055235	1.1723	0.00062458	532.7630671747069	118.53	2.6747	117.51	115.36	118.03	-1.0271					111	53	3	0	0	0	0.22961	1	8952	8952		71.296	9.1883	1	168650			35465	707	29205	29232	38913	38913		20			-0.01848752830687772
LSMGPFTFK	9	Unmodified	_LSMGPFTFK_					0	0	0			REV__ENSG00000188001|ENST00000345063|TPRG1	REV__ENSG00000188001|ENST00000345063|TPRG1	MULTI-MSMS	OvCa99_classI_Rep5	1	514.2695922851562	2	514.267696	1026.52084	1.8227	0.00093734	2.3965	0.0012325	4.2192	0.0021698	514.2687349526767	122.33	1.054	122.33	121.99	123.04	0					42	22	3	0	0	0	0.33652	1	14072	14072		58.782	2.0609	1	1182800	+		35466	22681	29206	29233	38914	38914					0.008638996851914271
LSMIHIER	8	Unmodified	_LSMIHIER_					0	0	0		ENSG00000103064|ENST00000219343|SLC7A6	ENSG00000103064|ENST00000219343|SLC7A6	ENSG00000103064|ENST00000219343|SLC7A6	MULTI-MSMS	OvCa99_classI_Rep5	1	499.7760314941406	2	499.776219	997.537886	2.0771	0.0010381	3.8687	0.0019335	5.9458	0.0029716	499.77813352905025	122.07	0.60204	122.07	121.75	122.36	0					23	12	3	0	0	0	0.65062	1	14045	14045		53.351	3.3269	1	203690			35467	2280	29207	29234	38915	38915					0.03901820291014246
LSMPPQRPL	9	Unmodified	_LSMPPQRPL_					0	0	0			REV__nc|ENSG00000177731|Q13045-2|FLII	REV__nc|ENSG00000177731|Q13045-2|FLII	MULTI-MSMS	OvCa9_classI_Rep3	3	519.7924194335938	2	519.791869	1037.56919	-0.78592	-0.00040852	0.2413	0.00012543	-0.54462	-0.00028309	519.7918935299025	86.881	2.3305	84.705	84.23	86.561	-2.1768					146	45	6	0	0	0	0.10363	1	5183	5183		96.19	5.8206	1	2538500	+		35468	22025	29208	29235	38916	38916					0.05190393325119658
LSMPTAATHI	10	Unmodified	_LSMPTAATHI_					0	0	0			REV__CACNA1G|p.L1529Qfs*112|1|0.06|ENSG00000006283|chr17:50607900-50607901|TG/-|frameshift_variant	REV__CACNA1G|p.L1529Qfs*112|1|0.06|ENSG00000006283|chr17:50607900-50607901|TG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.2713623046875	2	521.273509	1040.53247	-0.59362	-0.00030944	-1.6819	-0.00087671	-2.2755	-0.0011861	521.2724001366446	105.78	1.1086	103.77	103.4	104.51	-2.0161					54	21	3	0	0	0	0.53885	1	9612	9612		49.442	1.7842	1	232520	+		35469	15728	29209	29236	38917	38917					0.013820967085393931
LSMPTAATHI	10	Unmodified	_LSMPTAATHI_					0	0	0			REV__CACNA1G|p.L1529Qfs*112|1|0.06|ENSG00000006283|chr17:50607900-50607901|TG/-|frameshift_variant	REV__CACNA1G|p.L1529Qfs*112|1|0.06|ENSG00000006283|chr17:50607900-50607901|TG/-|frameshift_variant	MULTI-MATCH	OvCa99_classI_Rep5	1		2	521.273509	1040.53247	-1.3642	-0.00071113	-4.2336	-0.0022068	-5.5978	-0.002918	521.2711925145298	103.61	0.50662	103.61	103.34	103.85	0	-0.10565	-0.0018518	NaN	49.442	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	428020	+		35470	15728	29209	29236							0.013820967085393931
LSMPTAATHI	10	Unmodified	_LSMPTAATHI_					0	0	0			REV__CACNA1G|p.L1529Qfs*112|1|0.06|ENSG00000006283|chr17:50607900-50607901|TG/-|frameshift_variant	REV__CACNA1G|p.L1529Qfs*112|1|0.06|ENSG00000006283|chr17:50607900-50607901|TG/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.273509	1040.53247	-0.31124	-0.00016224	-2.0621	-0.0010749	-2.3733	-0.0012372	521.2722627617163	104.3	0.9892	103.73	103.42	104.41	-0.57639	0.013444	0.00041211	NaN	49.442	60	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196100	+		35471	15728	29209	29236							0.013820967085393931
LSMPTAATHI	10	Unmodified	_LSMPTAATHI_					0	0	0			REV__CACNA1G|p.L1529Qfs*112|1|0.06|ENSG00000006283|chr17:50607900-50607901|TG/-|frameshift_variant	REV__CACNA1G|p.L1529Qfs*112|1|0.06|ENSG00000006283|chr17:50607900-50607901|TG/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	521.273509	1040.53247	0.43568	0.00022711	-2.7267	-0.0014214	-2.2911	-0.0011943	521.2718795761944	105.1	1.1442	103.76	103.36	104.51	-1.3482	0.041181	-0.00028082	NaN	49.442	55	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	235520	+		35472	15728	29209	29236							0.013820967085393931
LSMPTAATHI	10	Unmodified	_LSMPTAATHI_					0	0	0			REV__CACNA1G|p.L1529Qfs*112|1|0.06|ENSG00000006283|chr17:50607900-50607901|TG/-|frameshift_variant	REV__CACNA1G|p.L1529Qfs*112|1|0.06|ENSG00000006283|chr17:50607900-50607901|TG/-|frameshift_variant	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	521.273509	1040.53247	-0.59362	-0.00030944	-1.6819	-0.00087671	-2.2755	-0.0011861	521.2724001366446	105.78	1.1086	103.77	103.4	104.51	-2.0161	0.051028	0.00080852	NaN	49.442	54	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232520	+		35473	15728	29209	29236							0.013820967085393931
LSMTTLMI	8	Unmodified	_LSMTTLMI_					0	0	0		ENSG00000094755|ENST00000265294|GABRP	ENSG00000094755|ENST00000265294|GABRP	ENSG00000094755|ENST00000265294|GABRP	MULTI-MSMS	OvCa99_classI_Rep5	1	455.2441101074219	2	455.242832	908.471111	0.59402	0.00027042	0.092697	4.22E-05	0.68671	0.00031262	455.24278298891693	63.16	0.91176	63.16	62.902	63.814	0					51	22	3	0	0	0	0.47599	1	5664	5664		79.939	8.5613	1	3332000			35474	1912	29210	29237	38918	38918					0.013214486848937668
LSMVTVVSI	9	Unmodified	_LSMVTVVSI_					0	0	0			REV__tr|A0A553STW5|A0A553STW5_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05835PE=3SV=1	REV__tr|A0A553STW5|A0A553STW5_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05835PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	474.7749938964844	2	474.775354	947.536154	1.0252	0.00048673	-2.8223	-0.00134	-1.7972	-0.00085325	474.7740709055338	153.54	0.58296	153.54	153.3	153.88	0					19	11	2	0	0	0	0.42676	1	17992	17992		49.442	3.4896	1	55612	+		35475	31017	29211	29238	38919	38919					0.06028766482404535
LSNAQQVPP	9	Unmodified	_LSNAQQVPP_					0	0	0			REV__ENSG00000196476|ENST00000360321|C20orf96	REV__ENSG00000196476|ENST00000360321|C20orf96	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.80926513671875	2	477.256174	952.497795	1.5511	0.00074025	-1.9333	-0.00092269	-0.38226	-0.00018244	477.25512895842246	67.513	1.3253	64.023	63.64	64.965	-3.4902					57	26	4	0	0	0	0.027455	1	4930	4930		34.173	9.9698	1	307310	+		35476	22835	29212	29239	38920	38920					0.019645968920940504
LSNAQQVPP	9	Unmodified	_LSNAQQVPP_					0	0	0			REV__ENSG00000196476|ENST00000360321|C20orf96	REV__ENSG00000196476|ENST00000360321|C20orf96	MULTI-MATCH	OvCa9_classI_Rep2	2		2	477.256174	952.497795	-0.094193	-4.4954E-05	-0.087766	-4.1887E-05	-0.18196	-8.6841E-05	477.2561007780791	66.794	1.0916	64.105	63.722	64.814	-2.6895	0.094804	0.00023944	NaN	26.693	48	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85903	+		35477	22835	29212	29239							0.019645968920940504
LSNDIISFKT	10	Unmodified	_LSNDIISFKT_					0	0	0		tr|A0A553SQ17|A0A553SQ17_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_16085PE=4SV=1	tr|A0A553SQ17|A0A553SQ17_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_16085PE=4SV=1	tr|A0A553SQ17|A0A553SQ17_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_16085PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2894897460938	2	569.311146	1136.60774	-0.39529	-0.00022504	-1.3696	-0.00077971	-1.7649	-0.0010047	569.3092890516516	53.171	0.3898	53.171	52.999	53.389	0					13	8	2	0	0	0	0.026602	1	4230	4230		47.96	11.513	1	109340			35478	34106	29213	29240	38921	38921					0.04489977440630355
LSNELSIKL	9	Unmodified	_LSNELSIKL_					0	0	0			REV__ENST00000446618.1_1_22:19245879-19246326:+|nuORF	REV__ENST00000446618.1_1_22:19245879-19246326:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	508.8047180175781	2	508.802957	1015.59136	-0.16507	-8.3986E-05	0.28543	0.00014523	0.12036	6.1241E-05	508.8029623860008	104.89	1.2957	104.89	104.36	105.66	0					80	29	4	0	0	0	0.13326	1	11804	11804		88.177	0.4805	1	3028100	+		35479	25906	29214	29241	38922	38922					0.08418896274520193
LSNHSYKPLN	10	Unmodified	_LSNHSYKPLN_					0	0	0			REV__nc|ENSG00000091157|Q9Y4E6-2|WDR7	REV__nc|ENSG00000091157|Q9Y4E6-2|WDR7	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.8021850585938	2	586.806562	1171.59857	-6.8597	-0.0040253	0.93898	0.000551	-5.9207	-0.0034743	586.8069299890403	160.36	3.1265	158.75	158.28	161.4	-1.61					144	76	3	0	0	0	0.67931	1	15906	15906		32.812	10.233	1	162470	+		35480	17245	29215	29242	38923	38923					0.019636288749325104
LSNKFCPD	8	Carbamidomethyl (C)	_LSNKFC(Carbamidomethyl (C))PD_	LSNKFC(1)PD		LSNKFC(71)PD		0	1	0			REV__ENSG00000257315|ENST00000550078|ZBED6	REV__ENSG00000257315|ENST00000550078|ZBED6	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.7304382324219	2	490.728935	979.443317	-0.77515	-0.00038039	3.9632	0.0019448	3.188	0.0015645	490.7307313395436	45.485	1.5107	42.446	42.127	43.637	-3.0385					68	28	3	0	0	0	0.56195	1	2331	2331		71.296	7.9894	1	294880	+		35481	23545	29216	29243	38924	38924	278				-0.047227382509845484
LSNKFCPD	8	Carbamidomethyl (C)	_LSNKFC(Carbamidomethyl (C))PD_					0	1	0			REV__ENSG00000257315|ENST00000550078|ZBED6	REV__ENSG00000257315|ENST00000550078|ZBED6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	490.728935	979.443317	0.38933	0.00019106	2.778	0.0013632	3.1673	0.0015543	490.73022580591635	45.448	0.7528	42.738	42.497	43.25	-2.7097	0.14596	-0.00033054	NaN	71.296	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63160	+		35482	23545	29216	29243			278				-0.047227382509845484
LSNKQLAEIN	10	Unmodified	_LSNKQLAEIN_					0	0	0			REV__tr|A0A7D6VSS6|A0A7D6VSS6_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_11855PE=4SV=1	REV__tr|A0A7D6VSS6|A0A7D6VSS6_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_11855PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.3145141601562	2	565.31422	1128.61389	0.79882	0.00045159	-0.71946	-0.00040672	0.079365	4.4866E-05	565.314782460585	90.934	0.9192	88.359	88.11	89.029	-2.575					26	17	3	0	0	0	0.39718	1	7850	7850		68.846	1.8842	1	261510	+		35483	31534	29217	29244	38925	38925					0.05472495672142941
LSNLLQQY	8	Unmodified	_LSNLLQQY_					0	0	0		nc|ENSG00000155755|Q96Q45-4|TMEM237;nc|ENSG00000155755|Q96Q45-2|TMEM237;ENSG00000155755|ENST00000409883|TMEM237;nc|ENSG00000155755|Q96Q45-5|TMEM237;nc|ENSG00000155755|Q96Q45-3|TMEM237	nc|ENSG00000155755|Q96Q45-4|TMEM237	nc|ENSG00000155755|Q96Q45-4|TMEM237	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.2486877441406	2	489.766374	977.518196	0.35871	0.00017568	-0.072316	-3.5418E-05	0.28639	0.00014026	489.7657939265176	72.248	0.56557	72.248	72.045	72.61	0					28	13	4	0	0	0	0.028476	1	7015	7015		40.573	1.7665	1	690240			35484	5799	29218	29245	38926	38926					0.02853767551891906
LSNLQVQNA	9	Unmodified	_LSNLQVQNA_					0	0	0		ENSG00000105866|ENST00000222584|SP4	ENSG00000105866|ENST00000222584|SP4	ENSG00000105866|ENST00000222584|SP4	MULTI-MSMS	OvCa9_classI_Rep2	2	493.765625	2	493.766906	985.519259	-0.73998	-0.00036538	-0.23368	-0.00011539	-0.97367	-0.00048076	493.76710400194355	68.35	1.8857	65.73	65.18	67.066	-2.6203					109	37	6	0	0	0	0.094616	1	5380	5380		98.629	8.2596	1	960960			35485	2510	29219	29246	38927	38927					0.025919819208070294
LSNLYPEPF	9	Unmodified	_LSNLYPEPF_					0	0	0			REV__nc|ENSG00000121904|Q7Z408-2|CSMD2;REV__nc|ENSG00000121904|Q7Z408|CSMD2	REV__nc|ENSG00000121904|Q7Z408-2|CSMD2	MULTI-MSMS	OvCa9_classI_Rep3	3	540.2731323242188	2	540.274032	1078.53351	0.11467	6.1953E-05	-3.9676	-0.0021436	-3.8529	-0.0020816	540.2718433132188	89.741	1.4827	87.66	87.239	88.722	-2.0805					86	28	5	0	0	0	0.19758	1	5533	5533		76.774	4.8967	1	580510	+		35486	28822;18565	29220	29247	38928	38928					-0.0026136565090837394
LSNLYPEPF	9	Unmodified	_LSNLYPEPF_					0	0	0			REV__nc|ENSG00000121904|Q7Z408-2|CSMD2;REV__nc|ENSG00000121904|Q7Z408|CSMD2	REV__nc|ENSG00000121904|Q7Z408-2|CSMD2	MULTI-MATCH	OvCa99_classI_Rep5	1		2	540.274032	1078.53351	3.0021	0.001622	-4.9966	-0.0026995	-1.9944	-0.0010775	540.2713917148172	87.985	0.33347	87.985	87.838	88.171	0	0.21145	-0.00082722	NaN	76.774	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210860	+		35487	28822;18565	29220	29247							-0.0026136565090837394
LSNLYPEPF	9	Unmodified	_LSNLYPEPF_					0	0	0			REV__nc|ENSG00000121904|Q7Z408-2|CSMD2;REV__nc|ENSG00000121904|Q7Z408|CSMD2	REV__nc|ENSG00000121904|Q7Z408-2|CSMD2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	540.274032	1078.53351	1.091	0.00058946	-5.1364	-0.0027751	-4.0454	-0.0021856	540.271244725491	89.124	1.5823	87.757	87.231	88.814	-1.3676	-0.017101	-0.00097834	NaN	76.774	92	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	296100	+		35488	28822;18565	29220	29247							-0.0026136565090837394
LSNLYPEPF	9	Unmodified	_LSNLYPEPF_					0	0	0			REV__nc|ENSG00000121904|Q7Z408-2|CSMD2;REV__nc|ENSG00000121904|Q7Z408|CSMD2	REV__nc|ENSG00000121904|Q7Z408-2|CSMD2	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	540.274032	1078.53351	0.11467	6.1953E-05	-3.9676	-0.0021436	-3.8529	-0.0020816	540.2718433132188	89.741	1.4827	87.66	87.239	88.722	-2.0805	-0.11344	0.00028467	NaN	76.774	86	28	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	580510	+		35489	28822;18565	29220	29247							-0.0026136565090837394
LSNPHKFLFV	10	Unmodified	_LSNPHKFLFV_					0	0	0		ENSG00000184459|ENST00000300399|BPIFC;nc|ENSG00000184459|Q8NFQ6-2|BPIFC	ENSG00000184459|ENST00000300399|BPIFC	ENSG00000184459|ENST00000300399|BPIFC	MULTI-MSMS	OvCa99_classI_Rep5	1	601.3539428710938	2	601.340041	1200.66553	1.7366	0.0010443	0.079405	4.7749E-05	1.816	0.001092	601.3395372514866	148.07	0.63843	148.07	147.88	148.52	0					30	12	3	0	0	0	0.6898	1	17330	17330		14.137	0	1	112000			35490	8160	29221	29248	38929	38929					0.07322284156703063
LSNPSPRLL	9	Unmodified	_LSNPSPRLL_					0	0	0		ENST00000579695.5_1_17:38078188-38078341:-|nuORF	ENST00000579695.5_1_17:38078188-38078341:-|nuORF	ENST00000579695.5_1_17:38078188-38078341:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.9444580078125	2	498.795466	995.57638	-0.78463	-0.00039137	-0.79727	-0.00039767	-1.5819	-0.00078904	498.7958530914479	81.51	1.1585	79.188	78.854	80.012	-2.3226					45	22	5	0	0	0	0.027441	1	4511	4511		40.778	12.896	1	172120			35491	13982	29222	29249	38930	38930					0.07841449197189831
LSNPSPRLL	9	Unmodified	_LSNPSPRLL_					0	0	0		ENST00000579695.5_1_17:38078188-38078341:-|nuORF	ENST00000579695.5_1_17:38078188-38078341:-|nuORF	ENST00000579695.5_1_17:38078188-38078341:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.9444580078125	2	498.795466	995.57638	-0.53055	-0.00026463	-0.56422	-0.00028143	-1.0948	-0.00054607	498.7956291693501	81.057	0.61474	78.734	78.492	79.106	-2.3226					19	11	3	0	0	0	0.027441	1	4511	4511		40.778	12.896	1	53427			35492	13982	29222	29249	38931	38931					0.07841449197189831
LSNQCCKSL	9	Unmodified	_LSNQCCKSL_					0	0	0			REV__ENST00000529230.5_1_11:46832627-46837749:-|nuORF	REV__ENST00000529230.5_1_11:46832627-46837749:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.2336120605469	2	498.23607	994.457586	0.40846	0.00020351	-3.2884	-0.0016384	-2.8799	-0.0014349	498.23435324202984	111.06	1.3683	109.46	109.02	110.38	-1.6011					42	25	3	0	0	0	0.26076	1	10241	10241		67.494	0	1	125120	+		35493	27188	29223	29250	38932	38932					-0.0398640909434107
LSNQEDLIA	9	Unmodified	_LSNQEDLIA_					0	0	0		tr|A0A553STE8|A0A553STE8_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04640PE=4SV=1	tr|A0A553STE8|A0A553STE8_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04640PE=4SV=1	tr|A0A553STE8|A0A553STE8_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04640PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	501.76043701171875	2	501.758746	1001.50294	-0.78297	-0.00039286	-0.64338	-0.00032282	-1.4264	-0.00071569	501.7584850892943	65.488	1.5895	65.488	65.15	66.739	0					117	39	6	0	0	0	0.084918	1	6052	6052		101.25	5.219	1	127620000			35494	34480	29224	29251	38933	38933					0.002248559640520398
LSNQFKLD	8	Unmodified	_LSNQFKLD_					0	0	0			REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	482.7583312988281	2	482.758549	963.502546	-0.81261	-0.00039229	3.8574	0.0018622	3.0448	0.0014699	482.760190086029	57.624	1.7466	54.832	54.178	55.925	-2.792					61	34	3	0	0	0	0.66057	1	4093	4093		51.335	1.8939	1	166990	+		35495	32737	29225	29252	38934	38934					0.01933481034848228
LSNQGPNLN	9	Unmodified	_LSNQGPNLN_					0	0	0			REV__nc|ENSG00000177200|Q3L8U1-2|CHD9	REV__nc|ENSG00000177200|Q3L8U1-2|CHD9	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.2642517089844	2	478.743431	955.472308	-1.3078	-0.00062612	0.96784	0.00046335	-0.34001	-0.00016278	478.7437541118501	61.091	1.0003	58.321	57.976	58.976	-2.7702					28	18	3	0	0	0	0.027441	1	4572	4572		49.442	8.8689	1	65483	+		35496	21991	29226	29253	38935	38935					-0.007208776303400555
LSNRSSPL	8	Unmodified	_LSNRSSPL_					0	0	0		nc|ENSG00000134369|Q8NEY1-7|NAV1;nc|ENSG00000134369|Q8NEY1-2|NAV1;nc|ENSG00000134369|Q8NEY1-4|NAV1;nc|ENSG00000134369|Q8NEY1-3|NAV1;nc|ENSG00000134369|Q8NEY1|NAV1;ENSG00000134369|ENST00000685211|NAV1;nc|ENSG00000134369|Q8NEY1-6|NAV1;NAV1|p.D425Ifs*29|1|0.6|ENSG00000134369|chr1:201780465-201780468|CAGA/-|frameshift_variant	nc|ENSG00000134369|Q8NEY1-7|NAV1	nc|ENSG00000134369|Q8NEY1-7|NAV1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.2544250488281	2	437.243067	872.47158	-0.28831	-0.00012606	0.069641	3.045E-05	-0.21867	-9.5614E-05	437.2395790081188	66.395	1.8176	62.905	62.564	64.381	-3.4902					102	36	4	0	0	0	0.028476	1	4931	4931		34.173	3.6689	1	973590			35497	15028	29227	29254	38936	38936					0.03024327720618203
LSNSSGLFRL	10	Unmodified	_LSNSSGLFRL_					0	0	0			REV__chr1:206093413-206097733|109|11.83|0.01|10.57|+|0|TE_info:AluSg7,AluSg7_dup601,Alu,SINE,donor,-,206093265,206093413|None,RHEX|1	REV__chr1:206093413-206097733|109|11.83|0.01|10.57|+|0|TE_info:AluSg7,AluSg7_dup601,Alu,SINE,donor,-,206093265,206093413|None,RHEX|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.8372192382812	2	547.303655	1092.59276	-0.58824	-0.00032195	0.36053	0.00019732	-0.22771	-0.00012463	547.3038175897577	55.128	1.3294	55.128	54.848	56.178	0					90	31	4	0	0	0	0.026522	1	4607	4607		65.465	19.009	1	22296000	+		35498	15816	29228	29255	38937	38937					0.0501653036328662
LSNSVLTPL	9	Unmodified	_LSNSVLTPL_					0	0	0			REV__ENST00000543937.5_2_11:71760491-71780907:-|nuORF	REV__ENST00000543937.5_2_11:71760491-71780907:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	472.28033447265625	2	472.276575	942.538597	0.1427	6.7396E-05	-0.12813	-6.0513E-05	0.014575	6.8832E-06	472.27634828483934	72.949	0.73915	72.949	72.374	73.113	0					34	18	4	0	0	0	0.3076	1	7145	7145		62.107	3.3255	1	1876300	+		35499	27394	29229	29256	38938	38938					0.06502938211713172
LSNTVLRPLL	10	Unmodified	_LSNTVLRPLL_					0	0	0			REV__ENST00000336838.10_1_2:55646247-55646439:-|nuORF	REV__ENST00000336838.10_1_2:55646247-55646439:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.352783203125	2	563.353148	1124.69174	0.72344	0.00040755	-1.5701	-0.00088453	-0.84668	-0.00047698	563.3523799001858	117.47	3.3994	116.13	115.53	118.93	-1.3452					169	64	5	0	0	0	0.49558	1	11006	11006		54.776	7.119	1	2980000	+		35500	24591	29230	29257	38939	38939					0.13438553328182934
LSNVEARR	8	Unmodified	_LSNVEARR_					0	0	0		ENSG00000116711|ENST00000367466|PLA2G4A	ENSG00000116711|ENST00000367466|PLA2G4A	ENSG00000116711|ENST00000367466|PLA2G4A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.7740783691406	2	472.76724	943.519927	0.5633	0.00026631	0.73638	0.00034814	1.2997	0.00061445	472.7672453745062	58.336	0.29974	54.944	54.752	55.051	-3.392					12	5	3	0	0	0	0.028476	1	3845	3845		65.803	0	1	28477			35501	3200	29231	29258	38940	38940					0.045908213605116543
LSNVHKKRVSA	11	Unmodified	_LSNVHKKRVSA_					0	0	0		nc|ENSG00000089250|P29475-2|NOS1;ENSG00000089250|ENST00000317775|NOS1;nc|ENSG00000089250|P29475-5|NOS1;nc|ENSG00000089250|P29475-3|NOS1	nc|ENSG00000089250|P29475-2|NOS1	nc|ENSG00000089250|P29475-2|NOS1	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8692016601562	2	619.870028	1237.7255	-3.6059	-0.0022352	2.5915	0.0016064	-1.0145	-0.00062885	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.7046	1	12959	12959		28.081	0.19925	1	664560			35502	1818	29232	29259	38941	38941					0.11614974819940471
LSNVIARKG	9	Unmodified	_LSNVIARKG_					0	0	0			REV__ENSG00000179532|ENST00000254579|DNHD1	REV__ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	OvCa9_classI_Rep3	3	479.78839111328125	2	479.295633	956.576714	0.28163	0.00013498	2.8388	0.0013606	3.1204	0.0014956	479.2969253619035	78.734	1.4007	76.381	75.998	77.399	-2.3527					70	27	4	0	0	0	0.027441	1	4166	4166		45.952	5.3793	1	285310	+		35503	22127	29233	29260	38942	38942					0.09668868917037798
LSNVKSFY	8	Unmodified	_LSNVKSFY_					0	0	0		ENST00000487834.5_1_3:108281971-108308222:-|nuORF;ENSG00000163507|ENST00000295746|CIP2A;nc|ENSG00000163507|Q8TCG1-2|CIP2A	ENST00000487834.5_1_3:108281971-108308222:-|nuORF	ENST00000487834.5_1_3:108281971-108308222:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	479.78839111328125	2	479.255643	956.496732	0.17143	8.2157E-05	0.85713	0.00041079	1.0286	0.00049294	479.25593996958906	78.732	1.4895	76.38	75.449	76.939	-2.3527					47	29	2	0	0	0	0.028476	1	4166	4166		38.806	6.8513	1	49087			35504	6317	29234	29261	38943	38943					0.016743825231856135
LSNYYSRLE	9	Unmodified	_LSNYYSRLE_					0	0	0		nc|ENSG00000259334|Q86U02|LINC00596	nc|ENSG00000259334|Q86U02|LINC00596	nc|ENSG00000259334|Q86U02|LINC00596	MULTI-SECPEP	OvCa9_classI_Rep2	2	572.3160400390625	2	572.785296	1143.55604	-0.50803	-0.00029099	-1.1283	-0.00064629	-1.6364	-0.00093728	572.7856107142119	81.165	1.5191	79.517	78.815	80.334	-1.6485					77	29	4	0	0	0	0.027461	1	6840	6840		49.442	16.629	1	57300			35505	15362	29235	29262	38944	38944					-0.00999766253312373
LSPAGPQSLL	10	Unmodified	_LSPAGPQSLL_					0	0	0			REV__ENST00000258149.9_1_12:69202067-69202202:+|nuORF	REV__ENST00000258149.9_1_12:69202067-69202202:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.837890625	2	491.782025	981.549496	1.063	0.00052277	1.0571	0.00051985	2.1201	0.0010426	491.7824558101613	83.485	1.5113	83.485	83.078	84.589	0					84	35	4	0	0	0	0.027755	1	8758	8758		106.68	21.522	1	8217800	+		35506	23907	29236	29263	38945	38945					0.05798340585999995
LSPAGQIFMCP	11	Unmodified	_LSPAGQIFMCP_					0	0	0		nc|ENSG00000179456|Q99592|ZBTB18;ENSG00000179456|ENST00000358704|ZBTB18	nc|ENSG00000179456|Q99592|ZBTB18	nc|ENSG00000179456|Q99592|ZBTB18	MULTI-SECPEP	OvCa9_classI_Rep4_	4	581.3222045898438	2	582.28302	1162.55149	-1.2286	-0.00071537	-2.7166	-0.0015818	-3.9451	-0.0022972	582.2814961025414	79.774	0.92348	77.022	76.75	77.673	-2.7514					42	18	3	0	0	0	0.025605	1	6490	6490		72.879	8.672	1	85978			35507	7824	29237	29264	38946	38946					-0.023286899920321957
LSPAGQIFMCP	11	Unmodified	_LSPAGQIFMCP_					0	0	0		nc|ENSG00000179456|Q99592|ZBTB18;ENSG00000179456|ENST00000358704|ZBTB18	nc|ENSG00000179456|Q99592|ZBTB18	nc|ENSG00000179456|Q99592|ZBTB18	MULTI-MATCH	OvCa9_classI_Rep2	2		2	582.28302	1162.55149	-0.058245	-3.3915E-05	-3.4015	-0.0019807	-3.4598	-0.0020146	582.2809058239869	78.925	1.1748	77.185	76.855	78.03	-1.7398	0.12136	-0.00052776	NaN	72.879	44	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43482			35508	7824	29237	29264							-0.023286899920321957
LSPAGQIFMCP	11	Unmodified	_LSPAGQIFMCP_					0	0	0		nc|ENSG00000179456|Q99592|ZBTB18;ENSG00000179456|ENST00000358704|ZBTB18	nc|ENSG00000179456|Q99592|ZBTB18	nc|ENSG00000179456|Q99592|ZBTB18	MULTI-MATCH	OvCa9_classI_Rep3	3		2	582.28302	1162.55149	-0.98002	-0.00057065	-2.7881	-0.0016234	-3.7681	-0.0021941	582.2813719707611	79.323	1.1525	76.983	76.657	77.81	-2.3399	-0.080216	0.00018666	NaN	72.879	46	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84373			35509	7824	29237	29264							-0.023286899920321957
LSPALVLPGC	10	Carbamidomethyl (C)	_LSPALVLPGC(Carbamidomethyl (C))_	LSPALVLPGC(1)		LSPALVLPGC(63)		0	1	0			REV__SLC23A3|p.S254Qfs*15|1|0.31|ENSG00000213901|chr2:219168234-219168234|T/-|frameshift_variant	REV__SLC23A3|p.S254Qfs*15|1|0.31|ENSG00000213901|chr2:219168234-219168234|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.7880249023438	2	513.786253	1025.55795	-0.34711	-0.00017834	3.1782	0.0016329	2.8311	0.0014546	513.7878714786193	39.389	2.2851	36.463	35.948	38.233	-2.9264					123	44	5	0	0	0	0.43592	1	1609	1609		63.306	15.391	1	2914100	+		35510	23274	29238	29265	38947	38947	275				0.04619571230955444
LSPARAALL	9	Unmodified	_LSPARAALL_					0	0	0		nc|ENSG00000173338|Q9Y2U2-2|KCNK7;nc|ENSG00000173338|Q9Y2U2-3|KCNK7;ENSG00000173338|ENST00000340313|KCNK7	nc|ENSG00000173338|Q9Y2U2-2|KCNK7	nc|ENSG00000173338|Q9Y2U2-2|KCNK7	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.2879943847656	2	456.287277	910.560001	-0.12853	-5.8645E-05	-0.036846	-1.6813E-05	-0.16537	-7.5457E-05	456.2871330314648	94.24	1.2331	91.772	91.478	92.711	-2.4685					44	24	2	0	0	0	0.18193	1	8248	8248		79.451	2.6044	1	246510			35511	7369	29239	29266	38948	38948					0.10114368031076992
LSPDPLPPL	9	Unmodified	_LSPDPLPPL_					0	0	0			REV__ENST00000382214.7_1_20:411269-411347:+|nuORF	REV__ENST00000382214.7_1_20:411269-411347:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.3129577636719	2	474.773668	947.532783	-1.0027	-0.00047606	1.6199	0.00076911	0.61724	0.00029305	474.7741096773666	103.15	0.83878	102.47	102.18	103.02	-0.68459					27	16	3	0	0	0	0.027448	1	9508	9508		53.351	14.545	1	44427	+		35512	25211	29240	29267	38949	38949					0.056918397000458754
LSPGVTPSPLA	11	Unmodified	_LSPGVTPSPLA_					0	0	0			REV__nc|ENSG00000182095|O15417-2|TNRC18	REV__nc|ENSG00000182095|O15417-2|TNRC18	MULTI-MSMS	OvCa9_classI_Rep2	2	519.7933959960938	2	519.795132	1037.57571	-0.83173	-0.00043233	-1.6752	-0.00087074	-2.5069	-0.0013031	519.7941003158112	120.39	3.5079	120.22	119.69	123.2	-0.17137					148	70	4	0	0	0	0.60323	1	11586	11586		44.377	1.981	1	553870	+		35513	22262	29241	29268	38950	38950					0.05842609757473838
LSPHRIFP	8	Unmodified	_LSPHRIFP_					0	0	0		ENSG00000090020|ENST00000263980|SLC9A1;nc|ENSG00000090020|P19634-2|SLC9A1	ENSG00000090020|ENST00000263980|SLC9A1	ENSG00000090020|ENST00000263980|SLC9A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.2681579589844	2	483.779619	965.544686	-0.44367	-0.00021464	-4.3192	-0.0020895	-4.7629	-0.0023042	483.7775128041347	39.216	1.0879	39.216	38.972	40.06	0					48	24	3	0	0	0	0.028476	1	2372	2372		33.516	18.851	1	2243300			35514	1830	29242	29269	38951	38951					0.06053501233884617
LSPHYLILM	9	Unmodified	_LSPHYLILM_					0	0	0		ENST00000464196.5_1_Y:22749894-22750047:+|nuORF;ENST00000465253.1_1_Y:22737757-22750047:+|nuORF	ENST00000464196.5_1_Y:22749894-22750047:+|nuORF	ENST00000464196.5_1_Y:22749894-22750047:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	542.8263549804688	2	543.804445	1085.59434	-0.44568	-0.00024236	3.5497	0.0019303	3.104	0.001688	543.8065838015365	66.935	1.6822	64.274	63.801	65.483	-2.661					92	33	5	0	0	0	0.027462	1	5182	5182		16.473	0	1	141170			35515	12244	29243	29270	38952	38952					0.05496448127678377
LSPIKEPAKV	10	Unmodified	_LSPIKEPAKV_					0	0	0		nc|ENSG00000171992|Q8N3V7-3|SYNPO;ENSG00000171992|ENST00000307662|SYNPO;nc|ENSG00000171992|Q8N3V7|SYNPO	nc|ENSG00000171992|Q8N3V7-3|SYNPO	nc|ENSG00000171992|Q8N3V7-3|SYNPO	MSMS	OvCa99_classI_Rep5	1	541.335693359375	2	541.334424	1080.6543	NaN	NaN	NaN	NaN	NaN	NaN	NaN	157.15	1	157.15	156.65	157.65	0								0	0	0	0.14156	1	18417	18417		33.922	1.1092	1				35516	7258	29244	29271	38953	38953					0.11719462062546881
LSPKFRIV	8	Unmodified	_LSPKFRIV_					0	0	0			REV__ENSG00000182050|ENST00000611864|MGAT4C	REV__ENSG00000182050|ENST00000611864|MGAT4C	MULTI-SECPEP	OvCa9_classI_Rep2	2	480.772705078125	2	480.30547	958.596387	-0.45753	-0.00021975	-4.0749	-0.0019572	-4.5324	-0.002177	480.3033959734637	32.078	0.64412	29.368	29.184	29.828	-2.7097					15	12	2	0	0	0	0.028476	1	1080	1080		11.511	0	1	26549	+		35517	22258	29245	29272	38954	38954					0.11543244927793239
LSPKNSKIL	9	Unmodified	_LSPKNSKIL_					0	0	0		ENST00000304621.10_1_18:21572946-21573000:+|nuORF	ENST00000304621.10_1_18:21572946-21573000:+|nuORF	ENST00000304621.10_1_18:21572946-21573000:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.7898864746094	2	500.313492	998.612431	0.49593	0.00024812	-1.5167	-0.00075883	-1.0208	-0.00051071	500.3125570683035	35.145	0.55144	32.296	32.089	32.64	-2.849					14	10	2	0	0	0	0.027462	1	1126	1126		8.2351	0	1	17524			35518	10225	29246	29273	38955	38955					0.11306906374034043
LSPKNWTL	8	Unmodified	_LSPKNWTL_					0	0	0			REV__nc|ENSG00000172534|P51610-2|HCFC1	REV__nc|ENSG00000172534|P51610-2|HCFC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.7720947265625	2	479.77146	957.528367	-0.72858	-0.00034955	0.87923	0.00042183	0.15065	7.2279E-05	479.77180148237096	73.547	1.387	70.151	69.881	71.269	-3.3961					73	28	3	0	0	0	0.40148	1	5699	5699		87.754	0	1	1146600	+		35519	21708	29247	29274	38956	38956					0.04790375277127623
LSPKVRKV	8	Unmodified	_LSPKVRKV_					0	0	0		ENST00000402913.2_1_X:26704220-26705692:+|nuORF	ENST00000402913.2_1_X:26704220-26705692:+|nuORF	ENST00000402913.2_1_X:26704220-26705692:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	463.81182861328125	2	463.810919	925.607286	-0.97528	-0.00045234	0.5589	0.00025922	-0.41637	-0.00019312	463.8110151147378	64.198	0.65738	64.198	63.974	64.631	0					36	15	3	0	0	0	0.66992	1	5826	5826		49.442	1.5259	1	1465200			35520	11436	29248	29275	38957	38957					0.14150647302085417
LSPLAERFI	9	Unmodified	_LSPLAERFI_					0	0	0		tr|A0A7D6VSR5|A0A7D6VSR5_9CLOTLysRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07950PE=3SV=1	tr|A0A7D6VSR5|A0A7D6VSR5_9CLOTLysRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07950PE=3SV=1	tr|A0A7D6VSR5|A0A7D6VSR5_9CLOTLysRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07950PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.3062133789062	2	523.305667	1044.59678	-0.97551	-0.00051049	0.61481	0.00032173	-0.3607	-0.00018876	523.3058336734236	109.12	1.9233	107.4	107.13	109.05	-1.7256					82	36	4	0	0	0	0.40667	1	10061	10061		51.335	1.8939	1	878890			35521	35051	29249	29276	38958	38958					0.0762661985700106
LSPLAWALL	9	Unmodified	_LSPLAWALL_					0	0	0			REV__ENSG00000008438|ENST00000008938|PGLYRP1	REV__ENSG00000008438|ENST00000008938|PGLYRP1	MULTI-MSMS	OvCa9_classI_Rep3	3	492.2984619140625	2	492.299853	982.585153	-0.50282	-0.00024754	-3.2945	-0.0016219	-3.7973	-0.0018694	492.2979887562517	98.584	1.3369	96.855	96.396	97.733	-1.7291					50	25	3	0	0	0	0.42057	1	6601	6601		50.025	2.1089	1	378280	+		35522	16456	29250	29277	38959	38959					0.09316422833660454
LSPLKSRKAH	10	Unmodified	_LSPLKSRKAH_					0	0	0		chr11:73844976-73864296|186|14.11|0.42|5.07|+|2|MRPL48,MRPL48|1	chr11:73844976-73864296|186|14.11|0.42|5.07|+|2|MRPL48,MRPL48|1	chr11:73844976-73864296|186|14.11|0.42|5.07|+|2|MRPL48,MRPL48|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	568.845703125	2	568.848564	1135.68258	0.54685	0.00031108	-4.2377	-0.0024106	-3.6909	-0.0020995	568.8459810585302	123.26	2.2433	121.89	120.96	123.2	-1.3666					118	44	3	0	0	0	0.50999	1	11670	11670		52.937	6.4799	1	383340			35523	304	29251	29278	38960	38960					0.12016204762517191
LSPLLVVHEL	10	Unmodified	_LSPLLVVHEL_					0	0	0		ENST00000603544.5_2_14:35591973-35592316:+|nuORF	ENST00000603544.5_2_14:35591973-35592316:+|nuORF	ENST00000603544.5_2_14:35591973-35592316:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	560.3400268554688	2	560.342249	1118.66995	-7.144	-0.0040031	3.6168	0.0020266	-3.5273	-0.0019765	560.3441648343594	161.4	2.0053	160.03	159.58	161.59	-1.3692					105	41	5	0	0	0	0.7759	1	14063	14063		21.96	1.013	1	475740			35524	14254	29252	29279	38961	38961					0.11535748579603933
LSPLLYIYV	9	Unmodified	_LSPLLYIYV_					0	0	0			REV__ENST00000273963.9_1_4:88116727-88116796:-|nuORF	REV__ENST00000273963.9_1_4:88116727-88116796:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.2863159179688	2	540.820618	1079.62668	-1.4514	-0.00078493	-1.5518	-0.00083925	-3.0032	-0.0016242	540.819550675051	92.236	1.4151	89.693	89.313	90.728	-2.5425					63	27	3	0	0	0	0.027449	1	7976	7976		40.573	1.7665	1	178710	+		35525	24087	29253	29280	38962	38962					0.09005558802323321
LSPLPLGPWP	10	Unmodified	_LSPLPLGPWP_					0	0	0			REV__nc|ENSG00000147804|Q6P5W5-2|SLC39A4	REV__nc|ENSG00000147804|Q6P5W5-2|SLC39A4	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.77783203125	2	538.810585	1075.60662	0.25716	0.00013856	-2.0984	-0.0011306	-1.8412	-0.00099208	538.8093543145669	71.829	0.61739	71.829	71.548	72.165	0					23	14	2	0	0	0	0.027021	1	6941	6941		37.159	19.691	1	324760	+		35526	28917	29254	29281	38963	38963					0.07183807862384128
LSPLSGSIQL	10	Unmodified	_LSPLSGSIQL_					0	0	0			REV__PLXND1|p.E1457*|1|0.09|ENSG00000004399|chr3:129565492-129565493|-/A|frameshift_variant	REV__PLXND1|p.E1457*|1|0.09|ENSG00000004399|chr3:129565492-129565493|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	507.79522705078125	2	507.795132	1013.57571	0.75768	0.00038475	-1.0025	-0.00050907	-0.24483	-0.00012432	507.7945488650609	127.54	1.3823	127.31	127.08	128.47	-0.2359					75	27	4	0	0	0	0.32926	1	12467	12467		77.318	2.2743	1	644690	+		35527	16378	29255	29282	38964	38964					0.06946609757483202
LSPMRRCF	8	Unmodified	_LSPMRRCF_					0	0	0			REV__ENST00000371917.4_1_20:47582525-47585780:+|nuORF	REV__ENST00000371917.4_1_20:47582525-47585780:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.3240661621094	2	505.257139	1008.49973	-0.054783	-2.7679E-05	3.6404	0.0018393	3.5856	0.0018116	505.25913714030366	105.96	0.20919	104.61	104.51	104.72	-1.3482					5	3	2	0	0	0	0.028476	1	7463	7463		40.573	6.4001	1	7953.6	+		35528	24991	29256	29283	38965	38965					-0.004183888952979942
LSPNRYKTT	9	Unmodified	_LSPNRYKTT_					0	0	0			REV__ENST00000555545.1_1_14:61201484-61220316:+|nuORF	REV__ENST00000555545.1_1_14:61201484-61220316:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.8123168945312	2	540.29583	1078.57711	-0.10253	-5.5398E-05	-0.051493	-2.7822E-05	-0.15403	-8.322E-05	540.2955099530791	58.561	0.57134	58.561	58.28	58.852	0					26	13	3	0	0	0	0.027448	1	4985	4985		53.351	0	1	429300	+		35529	16540	29257	29284	38966	38966					0.040962438462202044
LSPPEVRSL	9	Unmodified	_LSPPEVRSL_					0	0	0			REV__ENST00000480291.1_7:100609366-100609411:+|nuORF	REV__ENST00000480291.1_7:100609366-100609411:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.77301025390625	2	499.287474	996.560395	-0.93499	-0.00046683	0.69705	0.00034803	-0.23794	-0.0001188	499.2877257940441	91.929	1.9659	89.386	88.962	90.928	-2.5425					94	38	5	0	0	0	0.027462	1	7928	7928		39.253	7.723	1	1597000	+		35530	26456	29258	29285	38967	38967					0.06197742960296182
LSPPGLEALV	10	Unmodified	_LSPPGLEALV_					0	0	0		nc|ENSG00000124587|Q13608-2|PEX6;nc|ENSG00000124587|Q13608-3|PEX6;ENSG00000124587|ENST00000304611|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.2912902832031	2	498.292225	994.569897	-0.72241	-0.00035997	0.73391	0.0003657	0.011502	5.7315E-06	498.29217914126474	94.807	1.4504	92.338	91.811	93.262	-2.4685					59	28	4	0	0	0	0.26627	1	8327	8327		84.916	5.2029	1	207690			35531	3663	29259	29286	38968	38968					0.07239511245802532
LSPPGLEALV	10	Unmodified	_LSPPGLEALV_					0	0	0		nc|ENSG00000124587|Q13608-2|PEX6;nc|ENSG00000124587|Q13608-3|PEX6;ENSG00000124587|ENST00000304611|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	498.292225	994.569897	-0.20863	-0.00010396	0.05217	2.5996E-05	-0.15646	-7.7962E-05	498.2918525690979	93.513	1.7487	92.345	91.446	93.195	-1.168	0.023638	-0.00042079	NaN	84.916	66	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179940			35532	3663	29259	29286							0.07239511245802532
LSPPGLEALV	10	Unmodified	_LSPPGLEALV_					0	0	0		nc|ENSG00000124587|Q13608-2|PEX6;nc|ENSG00000124587|Q13608-3|PEX6;ENSG00000124587|ENST00000304611|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	498.292225	994.569897	-1.0144	-0.00050548	0.70559	0.00035159	-0.30883	-0.00015389	498.2922605978784	94.176	2.2205	92.281	91.345	93.565	-1.8956	-0.040569	0.0002304	NaN	84.916	74	43	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	266660			35533	3663	29259	29286							0.07239511245802532
LSPPTGSTQT	10	Unmodified	_LSPPTGSTQT_					0	0	0			REV__ENSG00000117983|ENST00000529681|MUC5B	REV__ENSG00000117983|ENST00000529681|MUC5B	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.8073425292969	2	494.750921	987.48729	-0.85622	-0.00042362	-2.4638	-0.001219	-3.32	-0.0016426	494.75072094965327	59.631	0.42476	59.631	59.377	59.802	0					25	10	4	0	0	0	0.027028	1	5132	5132		24.519	0	1	351800	+		35534	18375	29260	29287	38969	38969					-0.006954305530030069
LSPQLLLLLFL	11	Unmodified	_LSPQLLLLLFL_					0	0	0		nc|ENSG00000196364|A6NIE9|PRSS29P	nc|ENSG00000196364|A6NIE9|PRSS29P	nc|ENSG00000196364|A6NIE9|PRSS29P	MULTI-MSMS	OvCa99_classI_Rep5	1	423.94305419921875	3	423.944209	1268.8108	-0.53316	-0.00022603	-1.1758	-0.00049848	-1.709	-0.00072451	423.94362268715145	42.037	0.85601	42.037	41.853	42.709	0					37	19	3	0	0	0	0.72466	1	2683	2683		20.03	1.4994	1	297070			35535	15242	29261	29288	38970	38970					0.18714327233055883
LSPQQRVP	8	Unmodified	_LSPQQRVP_					0	0	0		ENSG00000196152|ENST00000342483|ZNF79	ENSG00000196152|ENST00000342483|ZNF79	ENSG00000196152|ENST00000342483|ZNF79	MULTI-SECPEP	OvCa99_classI_Rep5	1	463.2522277832031	2	462.766709	923.518865	2.3282	0.0010774	3.9716	0.0018379	6.2997	0.0029153	462.7685286760774	84.103	0.55074	84.103	83.921	84.472	0					26	12	3	0	0	0	0.028476	1	8768	8768		33.516	3.0119	1	488010			35536	8569	29262	29289	38971	38971					0.054046069916125816
LSPRLTRTWR	10	Unmodified	_LSPRLTRTWR_					0	0	0		ENST00000585280.5_1_17:45995848-46018744:-|nuORF	ENST00000585280.5_1_17:45995848-46018744:-|nuORF	ENST00000585280.5_1_17:45995848-46018744:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	430.24835205078125	3	429.254439	1284.74149	-0.81444	-0.0003496	-0.66768	-0.00028661	-1.4821	-0.00063621	429.5898036480017	58.337	0.6519	55.555	55.333	55.985	-2.7816					17	12	2	0	0	0	0.027253	1	4182	4182		20.03	2.5625	1	30138			35537	14026	29263	29290	38972	38972					0.11050681056826761
LSPRRVLPS	9	Unmodified	_LSPRRVLPS_					0	0	0			REV__ENSG00000108784|ENST00000225927|NAGLU	REV__ENSG00000108784|ENST00000225927|NAGLU	MULTI-MSMS	OvCa9_classI_Rep2	2	512.8138427734375	2	512.816733	1023.61891	-1.1249	-0.00057686	2.41	0.0012359	1.2851	0.00065901	512.8174858851256	63.537	1.2048	60.792	60.48	61.685	-2.7444					52	22	3	0	0	0	0.44568	1	4819	4819		47.657	1.7054	1	277420	+		35538	17902	29264	29291	38973	38973					0.10804844325411977
LSPSAVALAV	10	Unmodified	_LSPSAVALAV_					0	0	0		ENSG00000164010|ENST00000372517|ERMAP	ENSG00000164010|ENST00000372517|ERMAP	ENSG00000164010|ENST00000372517|ERMAP	MULTI-MSMS	OvCa9_classI_Rep4_	4	464.27996826171875	2	464.279118	926.543683	-1.0516	-0.00048825	1.0318	0.00047906	-0.019798	-9.192E-06	464.27939093077055	81.484	1.8959	78.773	78.445	80.341	-2.7106					61	38	3	0	0	0	0.20267	1	6694	6694		94.006	0.81096	1	616820			35539	6392	29265	29292	38974	38974					0.07747242074310634
LSPSFTSFQY	10	Unmodified	_LSPSFTSFQY_					0	0	0			REV__nc|ENSG00000135372|Q9H0A0-2|NAT10	REV__nc|ENSG00000135372|Q9H0A0-2|NAT10	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.8475952148438	2	588.782222	1175.54989	1.463	0.00086138	-3.412	-0.0020089	-1.949	-0.0011475	588.7801199785912	107.08	0.424	107.08	106.93	107.36	0					13	9	2	0	0	0	0.026915	1	12101	12101		20.947	0	1	326100	+		35540	19280	29266	29293	38975	38975					-0.030862844848115856
LSPSLSPLGG	10	Unmodified	_LSPSLSPLGG_					0	0	0		nc|ENSG00000125798|Q9Y261|FOXA2;ENSG00000125798|ENST00000419308|FOXA2	nc|ENSG00000125798|Q9Y261|FOXA2	nc|ENSG00000125798|Q9Y261|FOXA2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.28521728515625	2	464.260925	926.507297	-0.58782	-0.0002729	0.77629	0.0003604	0.18847	8.7501E-05	464.2611778886488	74.483	1.0974	71.252	70.723	71.82	-3.2308					39	22	2	0	0	0	0.026752	1	5871	5871		27.882	0	1	188320			35541	3735	29267	29294	38976	38976					0.04110365177632502
LSPSMASKL	9	Oxidation (M)	_LSPSM(Oxidation (M))ASKL_		LSPSM(1)ASKL		LSPSM(140)ASKL	0	0	1		ENSG00000013810|ENST00000313288|TACC3;ENST00000484651.5_1_4:1725148-1739714:+|nuORF;TACC3|p.E184Kfs*8|1|0.12|ENSG00000013810|chr4:1727951-1727951|G/-|frameshift_variant	ENSG00000013810|ENST00000313288|TACC3	ENSG00000013810|ENST00000313288|TACC3	MULTI-MSMS	OvCa99_classI_Rep5	1	475.2563781738281	2	475.254785	948.495018	2.0636	0.00098073	0.25506	0.00012122	2.3186	0.0011019	475.2547415819287	77.584	0.46471	77.584	77.336	77.801	0					24	10	3	0	0	0	0.022645	1	7835	7835		143.89	12.855	1	1941200			35542	993	29268	29295	38977	38977		31			0.01871005442922069
LSPSMASKL	9	Oxidation (M)	_LSPSM(Oxidation (M))ASKL_					0	0	1		ENSG00000013810|ENST00000313288|TACC3;ENST00000484651.5_1_4:1725148-1739714:+|nuORF;TACC3|p.E184Kfs*8|1|0.12|ENSG00000013810|chr4:1727951-1727951|G/-|frameshift_variant	ENSG00000013810|ENST00000313288|TACC3	ENSG00000013810|ENST00000313288|TACC3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	475.254785	948.495018	0.15903	7.5579E-05	-0.9873	-0.00046922	-0.82828	-0.00039364	475.2540182549981	79.513	0.81544	77.795	77.482	78.297	-1.7182	0.17503	-0.0005666	NaN	143.89	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39017			35543	993	29268	29295				31			0.01871005442922069
LSPSMASKL	9	Oxidation (M)	_LSPSM(Oxidation (M))ASKL_					0	0	1		ENSG00000013810|ENST00000313288|TACC3;ENST00000484651.5_1_4:1725148-1739714:+|nuORF;TACC3|p.E184Kfs*8|1|0.12|ENSG00000013810|chr4:1727951-1727951|G/-|frameshift_variant	ENSG00000013810|ENST00000313288|TACC3	ENSG00000013810|ENST00000313288|TACC3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	475.254785	948.495018	1.1608	0.00055169	-1.2251	-0.00058224	-0.064284	-3.0551E-05	475.25391300922854	79.765	0.95995	77.425	77.103	78.063	-2.3399	-0.1944	-0.00079263	NaN	143.89	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67309			35544	993	29268	29295				31			0.01871005442922069
LSPSMASKL	9	Oxidation (M)	_LSPSM(Oxidation (M))ASKL_					0	0	1		ENSG00000013810|ENST00000313288|TACC3;ENST00000484651.5_1_4:1725148-1739714:+|nuORF;TACC3|p.E184Kfs*8|1|0.12|ENSG00000013810|chr4:1727951-1727951|G/-|frameshift_variant	ENSG00000013810|ENST00000313288|TACC3	ENSG00000013810|ENST00000313288|TACC3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	475.254785	948.495018	-0.22675	-0.00010777	-1.7013	-0.00080855	-1.928	-0.00091631	475.2534691759253	80.385	0.78162	77.675	77.516	78.297	-2.7106	0.05493	-0.0012452	NaN	143.89	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112750			35545	993	29268	29295				31			0.01871005442922069
LSPTASIRR	9	Unmodified	_LSPTASIRR_					0	0	0		ENST00000273146.6_1_3:43020947-43074030:+|nuORF;ENST00000418093.2_1_3:42980387-43074030:+|nuORF	ENST00000273146.6_1_3:43020947-43074030:+|nuORF	ENST00000273146.6_1_3:43020947-43074030:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.8122863769531	2	500.79854	999.582528	-0.50914	-0.00025497	-4.2997	-0.0021533	-4.8088	-0.0024083	500.7954511087712	48.223	0.2543	45.115	44.938	45.192	-3.1077					7	4	2	0	0	0	0.027462	1	2638	2638		26.693	4.733	1	18975			35546	10007	29269	29296	38978	38978					0.08271967428709104
LSPVVPVTL	9	Unmodified	_LSPVVPVTL_					0	0	0			REV__ENST00000561734.5_1_16:835292-835496:-|nuORF	REV__ENST00000561734.5_1_16:835292-835496:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.79022216796875	2	462.791861	923.569169	0.27277	0.00012624	-3.0819	-0.0014263	-2.8091	-0.0013	462.7903124837854	33.565	1.4882	30.777	30.259	31.747	-2.7881					68	29	3	0	0	0	0.68424	1	921	921		21.96	1.4781	1	162630	+		35547	27639	29270	29297	38979	38979					0.10432716596767477
LSPWLITLP	9	Unmodified	_LSPWLITLP_					0	0	0		ENST00000397728.7_1_21:47609326-47609845:-|nuORF	ENST00000397728.7_1_21:47609326-47609845:-|nuORF	ENST00000397728.7_1_21:47609326-47609845:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2423706054688	2	520.312961	1038.61137	0.85735	0.00044609	-2.8641	-0.0014903	-2.0068	-0.0010442	520.3115829199166	123.16	0.56323	123.16	123.04	123.61	0					17	11	2	0	0	0	0.027462	1	14247	14247		27.882	0	1	40508			35548	11352	29271	29298	38980	38980					0.09360692005134297
LSPWLITLP	9	Unmodified	_LSPWLITLP_					0	0	0		ENST00000397728.7_1_21:47609326-47609845:-|nuORF	ENST00000397728.7_1_21:47609326-47609845:-|nuORF	ENST00000397728.7_1_21:47609326-47609845:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	520.312961	1038.61137	1.652	0.00085954	-6.0233	-0.003134	-4.3713	-0.0022745	520.3093047464878	124.56	0.25684	123.51	123.27	123.53	-1.0519	0.17223	-0.0026124	NaN	27.882	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5789.5			35549	11352	29271	29298							0.09360692005134297
LSQANERI	8	Unmodified	_LSQANERI_					0	0	0		tr|A0A553SIP9|A0A553SIP9_NIACIChemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_15230PE=3SV=1	tr|A0A553SIP9|A0A553SIP9_NIACIChemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_15230PE=3SV=1	tr|A0A553SIP9|A0A553SIP9_NIACIChemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_15230PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	465.7526550292969	2	465.753798	929.493044	-0.59884	-0.00027891	-0.26594	-0.00012386	-0.86478	-0.00040278	465.75348977247216	47.109	0.79227	44.399	44.192	44.984	-2.7097					37	15	3	0	0	0	0.60331	1	2849	2849		63.306	0	1	315460			35550	33407	29272	29299	38981	38981					0.025477127493331864
LSQANERI	8	Unmodified	_LSQANERI_					0	0	0		tr|A0A553SIP9|A0A553SIP9_NIACIChemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_15230PE=3SV=1	tr|A0A553SIP9|A0A553SIP9_NIACIChemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_15230PE=3SV=1	tr|A0A553SIP9|A0A553SIP9_NIACIChemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_15230PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	465.7535705566406	2	465.753798	929.493044	-0.66211	-0.00030838	0.59578	0.00027749	-0.066328	-3.0893E-05	465.7539083170596	59.929	2.3565	57.159	56.567	58.924	-2.7702					98	44	5	0	0	0	0.36941	1	4389	4389		94.006	5.3636	1	1317300			35551	33407	29272	29299	38982	38982					0.025477127493331864
LSQAWRVR	8	Unmodified	_LSQAWRVR_					0	0	0		GPRC5B|p.I238Sfs*14|1|0.09|ENSG00000167191|chr16:19872135-19872135|G/-|frameshift_variant;ENSG00000167191|ENST00000300571|GPRC5B;nc|ENSG00000167191|Q9NZH0-2|GPRC5B	GPRC5B|p.I238Sfs*14|1|0.09|ENSG00000167191|chr16:19872135-19872135|G/-|frameshift_variant	GPRC5B|p.I238Sfs*14|1|0.09|ENSG00000167191|chr16:19872135-19872135|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.3353271484375	2	508.293425	1014.5723	-1.3356	-0.00067885	1.0368	0.00052702	-0.29871	-0.00015183	508.2935798096152	44.147	0.70551	41.14	40.989	41.695	-3.0074					27	13	4	0	0	0	0.028476	1	2158	2158		38.806	0	1	237960			35552	6767	29273	29300	38983	38983					0.06559404494123555
LSQDLVLEP	9	Unmodified	_LSQDLVLEP_					0	0	0			REV__nc|ENSG00000290894|Q96TA0|PCDHB18P	REV__nc|ENSG00000290894|Q96TA0|PCDHB18P	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.814208984375	2	507.279315	1012.54408	-1.1567	-0.00058678	-0.32244	-0.00016357	-1.4792	-0.00075035	507.2805381829496	97.08	0.87878	95.3	94.771	95.65	-1.7809					29	16	3	0	0	0	0.027108	1	6402	6402		82.75	10.873	1	76387	+		35553	29218	29274	29301	38984	38984					0.03830617003518455
LSQEKDSVVI	10	Unmodified	_LSQEKDSVVI_					0	0	0		ENSG00000205301|ENST00000511113|MGAT4D	ENSG00000205301|ENST00000511113|MGAT4D	ENSG00000205301|ENST00000511113|MGAT4D	MULTI-MSMS	OvCa99_classI_Rep5	1	559.3101806640625	2	559.308603	1116.60265	1.1239	0.00062863	-1.239	-0.00069297	-0.11504	-6.4342E-05	559.3078395548317	67.119	0.6678	67.119	66.898	67.566	0					47	16	4	0	0	0	0.19075	1	6257	6257		95.815	18.498	1	5363800			35554	9062	29275	29302	38985	38985					0.04901673578001464
LSQEVFDLP	9	Unmodified	_LSQEVFDLP_					0	0	0		tr|A0A553SNP0|A0A553SNP0_NIACIRibosomeprotectionproteinVmlROS=NialliacirculansOX=1397GN=vmlRPE=3SV=1	tr|A0A553SNP0|A0A553SNP0_NIACIRibosomeprotectionproteinVmlROS=NialliacirculansOX=1397GN=vmlRPE=3SV=1	tr|A0A553SNP0|A0A553SNP0_NIACIRibosomeprotectionproteinVmlROS=NialliacirculansOX=1397GN=vmlRPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.27978515625	2	524.27149	1046.52843	-0.42432	-0.00022246	1.164	0.00061023	0.73964	0.00038777	524.2719244631273	75.031	0.62192	73.06	72.847	73.469	-1.9711					15	11	2	0	0	0	0.027462	1	6207	6207		29.15	8.2026	1	51926			35555	33941	29276	29303	38986	38986					0.00702330486478786
LSQFQGLMESM	11	Oxidation (M)	_LSQFQGLMESM(Oxidation (M))_		LSQFQGLMESM(1)		LSQFQGLM(-64)ESM(64)	0	0	1		nc|ENSG00000198815|Q9UPW0-2|FOXJ3;ENSG00000198815|ENST00000361346|FOXJ3	nc|ENSG00000198815|Q9UPW0-2|FOXJ3	nc|ENSG00000198815|Q9UPW0-2|FOXJ3	MULTI-MSMS	OvCa99_classI_Rep5	1	643.7921752929688	2	643.791406	1285.56826	2.0041	0.0012902	-2.5125	-0.0016175	-0.50837	-0.00032728	643.789640797827	106.82	0.52162	106.82	106.58	107.1	0					25	11	3	0	0	0	0.18846	1	12038	12038		81.525	19.418	2	864490			35556	8881	29277	29304	38987	38987		268			-0.0631023389676102
LSQFYLLI	8	Unmodified	_LSQFYLLI_					0	0	0			REV__ENST00000307533.10_1_4:6676994-6677156:+|nuORF	REV__ENST00000307533.10_1_4:6676994-6677156:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.7899169921875	2	498.791861	995.569169	-0.69611	-0.00034721	-3.8847	-0.0019376	-4.5808	-0.0022849	498.7898766980179	115.24	3.0674	115.12	114.7	117.77	-0.11777					207	61	7	0	0	0	0.56113	1	11007	11007		71.378	1.7503	1	2910400	+		35557	24308	29278	29305	38988	38988					0.07120716596762122
LSQGRPLN	8	Unmodified	_LSQGRPLN_					0	0	0			REV__ENST00000529220.5_1_11:30433017-30462824:-|nuORF	REV__ENST00000529220.5_1_11:30433017-30462824:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.28045654296875	2	442.751059	883.487565	3.3645	0.0014896	3.6888	0.0016332	7.0533	0.0031229	442.7525494633357	76.121	0.7634	76.121	75.837	76.6	0					29	18	2	0	0	0	0.028476	1	7657	7657		24.203	0	1	209720	+		35558	16814	29279	29306	38989	38989					0.041160339574958016
LSQIEAELN	9	Unmodified	_LSQIEAELN_					0	0	0		nc|ENSG00000095319|Q5SRE5-2|NUP188;ENSG00000095319|ENST00000372577|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.77813720703125	2	508.766571	1015.51859	-1.2771	-0.00064975	0.62014	0.00031551	-0.65697	-0.00033425	508.7665516240726	64.111	0.47947	64.111	63.854	64.334	0					18	11	2	0	0	0	0.027279	1	5773	5773		71.296	14.575	1	747410			35559	1924	29280	29307	38990	38990					0.011451424810843491
LSQIGRIVE	9	Unmodified	_LSQIGRIVE_					0	0	0		ENST00000471789.1_1_9:123594085-123605145:-|nuORF;nc|ENSG00000095261|Q16401-2|PSMD5;ENSG00000095261|ENST00000210313|PSMD5	ENST00000471789.1_1_9:123594085-123605145:-|nuORF	ENST00000471789.1_1_9:123594085-123605145:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7999267578125	2	507.800749	1013.58694	-1.3545	-0.0006878	0.98637	0.00050088	-0.3681	-0.00018692	507.8011650052205	54.128	1.8434	51.314	50.529	52.372	-2.8139					84	36	4	0	0	0	0.28934	1	3714	3714		64.207	2.0999	1	436050			35560	1923	29281	29308	38991	38991					0.08069431851606623
LSQIQLTLV	9	Unmodified	_LSQIQLTLV_					0	0	0			REV__ENST00000484256.1_1_22:29191536-29192243:-|nuORF	REV__ENST00000484256.1_1_22:29191536-29192243:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.81390380859375	2	507.813325	1013.6121	-0.39175	-0.00019894	-0.50693	-0.00025743	-0.89869	-0.00045636	507.8129117453663	58.068	1.9646	54.723	54.035	56	-3.3449					110	38	4	0	0	0	0.10363	1	3793	3793		96.19	13.95	1	2106200	+		35561	26546	29282	29309	38992	38992					0.10583486654172702
LSQKVIKHWFR	11	Unmodified	_LSQKVIKHWFR_					0	0	0		ZFHX4|p.S2870Mfs*29|1|0.03|ENSG00000091656|chr8:76855527-76855545|CAAGCCCATCCATCCATTT/-|frameshift_variant;nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ENSG00000091656|ENST00000651372|ZFHX4	ZFHX4|p.S2870Mfs*29|1|0.03|ENSG00000091656|chr8:76855527-76855545|CAAGCCCATCCATCCATTT/-|frameshift_variant	ZFHX4|p.S2870Mfs*29|1|0.03|ENSG00000091656|chr8:76855527-76855545|CAAGCCCATCCATCCATTT/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.2828674316406	3	481.285739	1440.83539	-6.5406	-0.0031479	2.0344	0.00097915	-4.5062	-0.0021688	481.28689914588375	161.43	3.2893	159.81	158.56	161.85	-1.6239					191	83	3	0	0	0	0.72552	1	15909	15909		8.7993	0.39205	1	100850			35562	1875	29283	29310	38993	38993					0.13260400159106212
LSQLAVSSPLE	11	Unmodified	_LSQLAVSSPLE_					0	0	0		nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1;nc|ENSG00000116127|Q8TCU4-3|ALMS1;ALMS1|p.P560Dfs*9|1|0.12|ENSG00000116127|chr2:73448199-73448212|CCTGAACCAGCTGA/-|frameshift_variant;ALMS1|p.K1102Afs*16|1|0.06|ENSG00000116127|chr2:73449823-73449824|AA/-|frameshift_variant	nc|ENSG00000116127|Q8TCU4-2|ALMS1	nc|ENSG00000116127|Q8TCU4-2|ALMS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.2720947265625	2	572.316428	1142.6183	1.7939	0.0010267	1.7201	0.00098442	3.514	0.0020111	572.3187549911063	117.59	0.65921	117.59	117.18	117.84	0					40	13	4	0	0	0	0.02523	1	13471	13471		31.634	0	1	66158			35563	3155	29284	29311	38994	38994					0.05269960095074566
LSQLFFEI	8	Unmodified	_LSQLFFEI_					0	0	0		DMXL2|p.P2585Efs*17|1|0.03|ENSG00000104093|chr15:51464727-51464728|-/CTGAGATTGCACCACTGCTC|frameshift_variant	DMXL2|p.P2585Efs*17|1|0.03|ENSG00000104093|chr15:51464727-51464728|-/CTGAGATTGCACCACTGCTC|frameshift_variant	DMXL2|p.P2585Efs*17|1|0.03|ENSG00000104093|chr15:51464727-51464728|-/CTGAGATTGCACCACTGCTC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.77313232421875	2	498.773668	995.532783	-0.76756	-0.00038284	-3.7703	-0.0018805	-4.5379	-0.0022634	498.77172605039726	91.582	1.517	89.04	88.76	90.277	-2.5425					55	29	3	0	0	0	0.50674	1	7942	7942		76.847	8.3619	1	434810			35564	744	29285	29312	38995	38995					0.03483839700038516
LSQLFILPL	9	Unmodified	_LSQLFILPL_					0	0	0		ENST00000273258.3_1_3:69154230-69154353:+|nuORF	ENST00000273258.3_1_3:69154230-69154353:+|nuORF	ENST00000273258.3_1_3:69154230-69154353:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	522.3294677734375	2	522.328611	1042.64267	0.34893	0.00018226	1.2258	0.00064025	1.5747	0.0008225	522.3291530697765	158.45	0.64937	158.45	158.19	158.84	0					30	13	3	0	0	0	0.31747	1	18582	18582		60.972	0	1	120070			35565	10008	29286	29313	38996	38996					0.12305265039231017
LSQLFYPLF	9	Unmodified	_LSQLFYPLF_					0	0	0		nc|ENSG00000148835|Q15542-2|TAF5;ENSG00000148835|ENST00000369839|TAF5	nc|ENSG00000148835|Q15542-2|TAF5	nc|ENSG00000148835|Q15542-2|TAF5	MULTI-MSMS	OvCa9_classI_Rep2	2	564.308837890625	2	564.310418	1126.60628	-0.64093	-0.00036169	-3.1776	-0.0017932	-3.8186	-0.0021549	564.3086346308005	121.22	1.0377	121.03	120.61	121.64	-0.19718					60	20	5	0	0	0	0.59983	1	11742	11742		31.955	0	1	328140			35566	5426	29287	29314	38997	38997					0.04804388142497373
LSQLNPYPE	9	Unmodified	_LSQLNPYPE_					0	0	0		ENST00000570077.1_1_15:62538426-62538813:-|nuORF	ENST00000570077.1_1_15:62538426-62538813:-|nuORF	ENST00000570077.1_1_15:62538426-62538813:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.806396484375	2	530.769114	1059.52368	2.5742	0.0013663	-0.42153	-0.00022374	2.1527	0.0011426	530.7688486442893	107.98	0.42529	107.98	107.77	108.2	0					16	9	2	0	0	0	0.027462	1	12206	12206		28.081	0	1	505960			35567	13888	29288	29315	38998	38998					-0.0037055365630749293
LSQLQHLL	8	Unmodified	_LSQLQHLL_					0	0	0		tr|A0A553SLP2|A0A553SLP2_NIACIDUF421domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21010PE=3SV=1	tr|A0A553SLP2|A0A553SLP2_NIACIDUF421domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21010PE=3SV=1	tr|A0A553SLP2|A0A553SLP2_NIACIDUF421domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21010PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	476.2851257324219	2	476.284734	950.554916	-0.6069	-0.00028906	0.59542	0.00028359	-0.011472	-5.464E-06	476.2848782734841	58.479	2.2012	55.699	55.184	57.386	-2.7801					103	42	4	0	0	0	0.24597	6	4213	4201;4213;4218;4221;4227;4234		116.9	17.529	1	618100			35568	33748	29289	29316	38999;39000;39001;39002;39003;39004	39000					0.07766064168458797
LSQLQHLL	8	Unmodified	_LSQLQHLL_					0	0	0		tr|A0A553SLP2|A0A553SLP2_NIACIDUF421domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21010PE=3SV=1	tr|A0A553SLP2|A0A553SLP2_NIACIDUF421domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21010PE=3SV=1	tr|A0A553SLP2|A0A553SLP2_NIACIDUF421domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21010PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.285400390625	2	476.284734	950.554916	0.46255	0.0002203	-0.74671	-0.00035565	-0.28416	-0.00013534	476.2842647491964	59.174	2.0796	55.782	55.502	57.582	-3.392					96	41	4	0	0	0	0.17036	4	3929	3929;3938;3951;3965		129.68	17.529	1	1276200			35569	33748	29289	29316	39005;39006;39007;39008	39005					0.07766064168458797
LSQLSFEVGAP	11	Unmodified	_LSQLSFEVGAP_					0	0	0		ZNF462|p.Q1930Rfs*3|1|0.04|ENSG00000148143|chr9:106929701-106929701|A/-|frameshift_variant;ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;ZNF462|p.K1242Rfs*39|1|0.04|ENSG00000148143|chr9:106927636-106927636|A/-|frameshift_variant	ZNF462|p.Q1930Rfs*3|1|0.04|ENSG00000148143|chr9:106929701-106929701|A/-|frameshift_variant	ZNF462|p.Q1930Rfs*3|1|0.04|ENSG00000148143|chr9:106929701-106929701|A/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.3401489257812	2	574.303321	1146.59209	0.34437	0.00019777	1.5317	0.00087964	1.876	0.0010774	574.3032453146981	72.124	0.33466	72.124	71.956	72.291	0					14	7	3	0	0	0	0.025344	1	6998	6998		27.047	3.5246	1	403050			35570	5386	29290	29317	39009	39009					0.024656909235773128
LSQLTRPSL	9	Unmodified	_LSQLTRPSL_					0	0	0			REV__C9orf3-HIATL1|1|fusion	REV__C9orf3-HIATL1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	507.8006896972656	2	507.800749	1013.58694	-1.3545	-0.0006878	0.98637	0.00050088	-0.3681	-0.00018692	507.8011650052205	54.128	1.8434	51.314	50.529	52.372	-2.8139					84	36	4	0	0	0	0.11471	1	3706	3706		93.195	18.94	1	436050	+		35571	15721	29291	29318	39010	39010					0.08069431851606623
LSQLTRPSL	9	Unmodified	_LSQLTRPSL_					0	0	0			REV__C9orf3-HIATL1|1|fusion	REV__C9orf3-HIATL1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.802001953125	2	507.800749	1013.58694	-1.2338	-0.00062655	0.78921	0.00040076	-0.44464	-0.00022579	507.8011244097221	54.456	2.4006	51.208	50.466	52.866	-3.2474					94	46	4	0	0	0	0.094616	1	3379	3379		98.629	16.389	1	1499800	+		35572	15721	29291	29318	39011	39011					0.08069431851606623
LSQLVGIEP	9	Unmodified	_LSQLVGIEP_					0	0	0			REV__ENSG00000171488|ENST00000370454|LRRC8C	REV__ENSG00000171488|ENST00000370454|LRRC8C	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.2940979003906	2	478.276575	954.538597	0.95388	0.00045622	1.5245	0.00072911	2.4783	0.0011853	478.27718365504336	81.065	0.5443	81.065	80.827	81.372	0					16	12	2	0	0	0	0.027455	1	8357	8357		34.173	0	1	201840	+		35573	21617	29292	29319	39012	39012					0.05950938211697121
LSQNLSTKV	9	Unmodified	_LSQNLSTKV_					0	0	0			REV__ENSG00000064835|ENST00000350375|POU1F1	REV__ENSG00000064835|ENST00000350375|POU1F1	MULTI-MSMS	OvCa9_classI_Rep2	2	495.2865905761719	2	495.284931	988.55531	0.33859	0.0001677	3.3326	0.0016506	3.6712	0.0018183	495.28647269641976	109.21	1.5826	109.04	108.72	110.3	-0.17351					86	31	5	0	0	0	0.48047	1	10289	10289		44.377	3.599	1	489630	+		35574	16777	29293	29320	39013	39013					0.060574390976512404
LSQNTTLLL	9	Unmodified	_LSQNTTLLL_					0	0	0			REV__ENSG00000214943|ENST00000399285|GPR33	REV__ENSG00000214943|ENST00000399285|GPR33	MULTI-MSMS	OvCa99_classI_Rep5	1	501.7975158691406	2	501.795132	1001.57571	1.3523	0.00067858	0.79019	0.00039651	2.1425	0.0010751	501.7953483978705	79.304	0.39531	79.304	79.079	79.474	0					29	9	4	0	0	0	0.16562	1	8098	8098		82.241	2.7895	1	6318400	+		35575	23304	29294	29321	39014	39014					0.07498609757476515
LSQPPFQP	8	Unmodified	_LSQPPFQP_					0	0	0			REV__nc|ENSG00000103460|O15405-2|TOX3	REV__nc|ENSG00000103460|O15405-2|TOX3	MULTI-SECPEP	OvCa9_classI_Rep3	3	456.2704162597656	2	457.242535	912.470518	-0.65367	-0.00029888	0.67924	0.00031058	0.025569	1.1691E-05	457.24268341995105	75.916	1.2894	73.544	73.216	74.505	-2.3715					34	24	2	0	0	0	0.028476	1	3933	3933		27.882	3.3782	1	51855	+		35576	17618	29295	29322	39015	39015					0.010781133517070884
LSQPQALPLP	10	Unmodified	_LSQPQALPLP_					0	0	0			REV__ENST00000372324.5_1_1:44456265-44456820:+|nuORF	REV__ENST00000372324.5_1_1:44456265-44456820:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.7623901367188	2	532.310949	1062.60735	0.34984	0.00018623	-1.031	-0.0005488	-0.68114	-0.00036258	532.3099931347408	118.59	0.69392	117.57	117.34	118.03	-1.0271					29	13	3	0	0	0	0.026553	1	8958	8958		66.429	3.4509	1	63709	+		35577	25001	29296	29323	39016	39016					0.07854602511406483
LSQPRFVQREP	11	Unmodified	_LSQPRFVQREP_					0	0	0			REV__ENST00000392474.6_1_12:121675701-121675980:-|nuORF	REV__ENST00000392474.6_1_12:121675701-121675980:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	453.7754211425781	3	452.917604	1355.73098	0.76406	0.00034606	-3.5395	-0.0016031	-2.7755	-0.0012571	452.9157945157083	57.247	0.81584	53.902	53.577	54.393	-3.3449					32	15	3	0	0	0	0.026068	1	3693	3693		27.644	0	1	81290	+		35578	25260	29297	29324	39017	39017					0.06734653611761132
LSQPRLIPE	9	Unmodified	_LSQPRLIPE_					0	0	0			REV__ENST00000307076.8_1_3:52568864-52569062:-|nuORF	REV__ENST00000307076.8_1_3:52568864-52569062:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	526.809326171875	2	526.808574	1051.60259	0.4212	0.00022189	-1.6354	-0.00086156	-1.2142	-0.00063967	526.8082512786059	160.08	0.49861	160.08	159.86	160.35	0					23	9	3	0	0	0	0.5811	1	18764	18764		34.173	0	1	161860	+		35579	24301	29298	29325	39018	39018					0.07885718368675043
LSQPTPSLV	9	Unmodified	_LSQPTPSLV_					0	0	0		ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ATAD2|p.A1317T|1|0.05|ENSG00000156802|chr8:123325946-123325946|C/T|missense_variant	ENSG00000156802|ENST00000287394|ATAD2	ENSG00000156802|ENST00000287394|ATAD2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.29327392578125	2	471.26875	940.522947	0.23768	0.00011201	0.51938	0.00024477	0.75706	0.00035678	471.26913635201197	82.799	0.43874	80.116	79.832	80.27	-2.683					12	8	2	0	0	0	0.027453	1	6835	6835		37.812	0	1	10802			35580	5857	29299	29326	39019	39019					0.05030651694664812
LSQQSHCPD	9	Unmodified	_LSQQSHCPD_					0	0	0		ENST00000486463.5_1_2:96687909-96693504:-|nuORF;nc|ENSG00000186281|Q6NUI2|GPAT2;ENSG00000186281|ENST00000434632|GPAT2;ENST00000471757.5_1_2:96687909-96690664:-|nuORF;nc|ENSG00000186281|Q6NUI2-5|GPAT2	ENST00000486463.5_1_2:96687909-96693504:-|nuORF	ENST00000486463.5_1_2:96687909-96693504:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.7629699707031	2	507.719098	1013.42364	-0.90688	-0.00046044	1.1625	0.0005902	0.25558	0.00012976	507.7193796511659	115.94	0.49335	114.89	114.7	115.19	-1.0414					12	9	2	0	0	0	0.027462	1	8653	8653		31.53	6.0796	1	13255			35581	8327	29300	29327	39020	39020					-0.08253114261742667
LSQSFHVCSQL	11	Unmodified	_LSQSFHVCSQL_					0	0	0		ENST00000512637.5_1_4:109094188-109097045:+|nuORF;ENST00000506314.1_1_4:109094188-109094809:+|nuORF;ENST00000508266.1_1_4:109092938-109094809:+|nuORF	ENST00000512637.5_1_4:109094188-109097045:+|nuORF	ENST00000512637.5_1_4:109094188-109097045:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	416.87408447265625	3	416.872895	1247.59686	0.2476	0.00010322	0.010586	4.4129E-06	0.25818	0.00010763	416.8727091773208	61.925	2.0223	61.925	60.559	62.581	0					119	47	4	0	0	0	0.24524	1	5509	5509		73.9	6.9386	1	2885700			35582	12905	29301	29328	39021	39021					-0.01703748205318334
LSQVRDHL	8	Unmodified	_LSQVRDHL_					0	0	0		AKAP9-CDK14|2|fusion;AKAP9-CDK14|1|fusion;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9	AKAP9-CDK14|2|fusion	AKAP9-CDK14|2|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.2691955566406	2	484.269616	966.524678	-1.33	-0.00064407	1.1934	0.00057794	-0.13655	-6.6126E-05	484.2700259003141	50.559	1.5275	47.386	46.995	48.522	-3.1734					51	29	3	0	0	0	0.67745	1	2914	2914		47.916	3.5384	1	524870			35583	58	29302	29329	39022	39022					0.04007705503283887
LSRADLKAQ	9	Unmodified	_LSRADLKAQ_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	MULTI-MSMS	OvCa99_classI_Rep5	1	501.2983093261719	2	501.290548	1000.56654	1.823	0.00091387	4.206	0.0021084	6.029	0.0030223	501.29256120189194	78.701	0.78596	78.701	78.374	79.16	0					32	18	2	0	0	0	0.12515	1	7994	7994		90.37	5.4543	1	1902000	+		35584	29026	29303	29330	39023	39023					0.06628261191792717
LSRAGPLPLL	10	Unmodified	_LSRAGPLPLL_					0	0	0		nc|ENSG00000161642|Q96PM9-3|ZNF385A;nc|ENSG00000161642|Q96PM9|ZNF385A	nc|ENSG00000161642|Q96PM9-3|ZNF385A	nc|ENSG00000161642|Q96PM9-3|ZNF385A	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.8292236328125	2	518.829309	1035.64407	0.0085595	4.4409E-06	-0.59769	-0.0003101	-0.58913	-0.00030566	518.8289766262699	122.91	2.4522	121.55	121.01	123.46	-1.3666					110	48	3	0	0	0	0.41408	1	11660	11660		66.429	0	1	898440			35585	15130	29304	29331	39024	39024					0.12766899127996112
LSRALTTIG	9	Unmodified	_LSRALTTIG_					0	0	0			REV__ENST00000437634.1_1_2:154277901-154278186:-|nuORF	REV__ENST00000437634.1_1_2:154277901-154278186:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.7444763183594	2	466.282192	930.549831	-0.34452	-0.00016064	-0.40667	-0.00018962	-0.75118	-0.00035026	466.28185032568615	43.334	0.2083	43.334	43.227	43.435	0					7	4	2	0	0	0	0.027461	1	2857	2857		49.442	31.179	1	66036	+		35586	25797	29305	29332	39025	39025					0.08177760305841275
LSRAMLPCP	9	Unmodified	_LSRAMLPCP_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.2873229980469	2	494.259348	986.504143	-1.1961	-0.00059118	2.2984	0.001136	1.1024	0.00054485	494.2595138525889	48.853	0.88542	45.745	45.399	46.285	-3.1077					33	16	3	0	0	0	0.027462	1	2745	2745		18.324	3.4595	1	98758			35587	2891	29306	29333	39026	39026					0.010350755275908341
LSRARKRA	8	Unmodified	_LSRARKRA_					0	0	0		ENST00000583087.5_1_3:123339167-123339366:-|nuORF;ENST00000595401.1_1_19:21216925-21216991:+|nuORF;ENST00000599548.5_1_19:21216925-21236278:+|nuORF	ENST00000583087.5_1_3:123339167-123339366:-|nuORF	ENST00000583087.5_1_3:123339167-123339366:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	479.280029296875	2	479.306867	956.599181	-0.46581	-0.00022326	-3.0424	-0.0014582	-3.5082	-0.0016815	479.3056684724406	96.4	0.40698	94.571	94.42	94.827	-1.8286					9	7	2	0	0	0	0.028476	1	6353	6353		30.504	5.0535	1	10018			35588	14007	29307	29334	39027	39027					0.11914513105307378
LSRAYTID	8	Unmodified	_LSRAYTID_					0	0	0		ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	ENSG00000198730|ENST00000361367|CTR9	MSMS	OvCa9_classI_Rep4_	4	469.75189208984375	2	469.750724	937.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.389	1	65.907	65.407	66.407	-3.4812								0	0	0	0.30129	1	5192	5192		66.429	5.4573	1				35589	8859	29308	29335	39028	39028					0.01565194517809232
LSRCREGHLV	10	Unmodified	_LSRCREGHLV_					0	0	0			REV__ENSG00000013563|ENST00000369807|DNASE1L1	REV__ENSG00000013563|ENST00000369807|DNASE1L1	MULTI-SECPEP	OvCa9_classI_Rep3	3	584.7825317382812	2	585.314032	1168.61351	-2.4534	-0.001436	-4.2237	-0.0024722	-6.6772	-0.0039082	585.3101156520968	86.162	0.45178	83.941	83.785	84.237	-2.2204					11	8	2	0	0	0	0.026551	1	5113	5113		60.118	0	1	12196	+		35590	16509	29309	29336	39029	39029					0.03594797471282618
LSREDKKQV	9	Unmodified	_LSREDKKQV_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF;ENST00000534785.1_1_11:65061654-65063444:+|nuORF;ENST00000533192.1_1_11:65055200-65062124:+|nuORF;EHBP1L1-POLA2|1|fusion	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MSMS	OvCa99_classI_Rep5	1	551.8131713867188	2	551.814387	1101.61422	-0.84918	-0.00046859	1.322	0.00072949	0.4728	0.0002609	551.8150029501477	25.868	0.49838	25.868	25.693	26.191	0					21	9	3	0	0	0	0.33652	1	620	620		58.782	5.4305	1	132670			35591	995	29310	29337	39030	39030					0.06747915391974857
LSREGSPIP	9	Unmodified	_LSREGSPIP_					0	0	0		ENST00000496023.1_1_7:4798670-4799378:+|nuORF;nc|ENSG00000164916|P85037-2|FOXK1;ENSG00000164916|ENST00000328914|FOXK1	ENST00000496023.1_1_7:4798670-4799378:+|nuORF	ENST00000496023.1_1_7:4798670-4799378:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.2648010253906	2	478.263999	954.513445	0.1499	7.1694E-05	-0.93042	-0.00044498	-0.78051	-0.00037329	478.2635310226388	62.047	3.0424	58.589	57.417	60.459	-3.4577					136	62	4	0	0	0	0.35444	1	4277	4277		56.721	0.28726	1	2869500			35592	6499	29311	29338	39031	39031					0.03436883409131042
LSRERVFSE	9	Unmodified	_LSRERVFSE_					0	0	0		nc|ENSG00000117020|Q9Y243-2|AKT3;ENSG00000117020|ENST00000673466|AKT3;ENST00000557552.1_1_14:105239464-105240028:-|nuORF;nc|ENSG00000142208|P31749-2|AKT1;ENSG00000142208|ENST00000649815|AKT1	nc|ENSG00000117020|Q9Y243-2|AKT3	nc|ENSG00000117020|Q9Y243-2|AKT3	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.8265991210938	2	561.798737	1121.58292	3.3134	0.0018615	0.096141	5.4012E-05	3.4096	0.0019155	561.798728075829	100.96	0.29475	100.96	100.9	101.19	0					8	6	2	0	0	0	0.027462	1	11226	11226		10.265	0	1	140910			35593	3231	29312	29339	39032	39032					0.026993423579142473
LSRFLLKSC	9	Unmodified	_LSRFLLKSC_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-MSMS	OvCa9_classI_Rep2	2	533.8062744140625	2	533.807519	1065.60049	-1.2932	-0.0006903	3.2078	0.0017124	1.9146	0.0010221	533.8095076389328	94.914	1.2795	93.814	93.165	94.444	-1.0995					56	25	5	0	0	0	0.1149	4	8507	8507;8513;8519;8526		93.143	15.826	1	615630			35594	4856	29313	29340	39033;39034;39035;39036	39033					0.07030966359207014
LSRFLLKSC	9	Unmodified	_LSRFLLKSC_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MSMS	OvCa9_classI_Rep4_	4	533.8087768554688	2	533.807519	1065.60049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.285	1	93.859	93.359	94.359	-2.4256								0	0	0	0.087093	1	8493	8493		72.879	14.649	1				35595	4856	29313	29340	39037	39037					0.07030966359207014
LSRGPVWLLL	10	Unmodified	_LSRGPVWLLL_					0	0	0		ENST00000301788.11_1_11:62534036-62534117:+|nuORF	ENST00000301788.11_1_11:62534036-62534117:+|nuORF	ENST00000301788.11_1_11:62534036-62534117:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	576.786865234375	2	577.358234	1152.70191	-1.0272	-0.00059307	-2.9383	-0.0016965	-3.9655	-0.0022895	577.3559971344165	104.22	0.36749	102.1	101.8	102.17	-2.1192					9	6	2	0	0	0	0.027028	1	9426	9426		39.253	23.611	1	11321			35596	10191	29314	29341	39038	39038					0.13167161053411292
LSRGPVWLLL	10	Unmodified	_LSRGPVWLLL_					0	0	0		ENST00000301788.11_1_11:62534036-62534117:+|nuORF	ENST00000301788.11_1_11:62534036-62534117:+|nuORF	ENST00000301788.11_1_11:62534036-62534117:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	577.358234	1152.70191	-0.77136	-0.00044535	-3.5646	-0.0020581	-4.336	-0.0025034	577.3561959084935	103.35	0.31659	101.92	101.81	102.13	-1.4347	-0.027588	-0.00053401	NaN	31.53	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12305			35597	10191	29314	29341							0.13167161053411292
LSRGRRWTL	9	Unmodified	_LSRGRRWTL_					0	0	0		ENST00000299977.8_1_17:33585758-33585863:+|nuORF	ENST00000299977.8_1_17:33585758-33585863:+|nuORF	ENST00000299977.8_1_17:33585758-33585863:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	572.3154296875	2	572.838531	1143.66251	-0.48197	-0.00027609	2.1194	0.0012141	1.6374	0.00093799	572.8396417669321	105.2	1.0582	103.19	102.64	103.7	-2.0161					29	18	3	0	0	0	0.027462	1	9533	9533		19.104	0	1	36487			35598	10167	29315	29342	39039	39039					0.09642453822561947
LSRGSIEI	8	Unmodified	_LSRGSIEI_					0	0	0		KCNH7|p.Q1048Pfs*5|1|0.11|ENSG00000184611|chr2:162373653-162373654|-/T|frameshift_variant;KCNH7|p.E1094Kfs*31|1|0.18|ENSG00000184611|chr2:162373514-162373515|-/AGAAGCAGGATAAAGGACTCTTTAAATTGCTT|frameshift_variant;ENSG00000184611|ENST00000332142|KCNH7	KCNH7|p.Q1048Pfs*5|1|0.11|ENSG00000184611|chr2:162373653-162373654|-/T|frameshift_variant	KCNH7|p.Q1048Pfs*5|1|0.11|ENSG00000184611|chr2:162373653-162373654|-/T|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	437.7547912597656	2	437.753267	873.491981	0.16475	7.2121E-05	-0.30419	-0.00013316	-0.13944	-6.1038E-05	437.7530541438239	64.274	1.1391	64.274	64.011	65.15	0					41	27	2	0	0	0	0.33046	1	5830	5830		101.6	0	1	3113400			35599	8175	29316	29343	39040	39040					0.05017498380402685
LSRIDLKN	8	Unmodified	_LSRIDLKN_					0	0	0		ENSG00000112144|ENST00000676107|CILK1	ENSG00000112144|ENST00000676107|CILK1	ENSG00000112144|ENST00000676107|CILK1	MULTI-MSMS	OvCa99_classI_Rep5	1	479.78729248046875	2	479.787641	957.56073	-0.70234	-0.00033697	0.67745	0.00032503	-0.024886	-1.194E-05	479.78785946180045	43.496	0.81064	43.496	43.27	44.08	0					43	18	3	0	0	0	0.3457	1	2872	2872		98.629	8.0285	1	2776700			35600	2881	29317	29344	39041	39041					0.0802516268013278
LSRIEDIQN	9	Unmodified	_LSRIEDIQN_					0	0	0			REV__tr|A0A553SQH3|A0A553SQH3_NIACIProbablenitronatemonooxygenaseOS=NialliacirculansOX=1397GN=CEQ21_07615PE=3SV=1	REV__tr|A0A553SQH3|A0A553SQH3_NIACIProbablenitronatemonooxygenaseOS=NialliacirculansOX=1397GN=CEQ21_07615PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	544.2987670898438	2	544.290745	1086.56694	0.19537	0.00010634	-0.69195	-0.00037662	-0.49657	-0.00027028	544.7916359960678	92.404	0.42227	91.236	91.024	91.446	-1.168					11	7	2	0	0	0	0.027304	1	8208	8208		77.318	0	1	14241	+		35601	30627	29318	29345	39042	39042					0.027116361210119067
LSRILNTAI	9	Unmodified	_LSRILNTAI_					0	0	0			REV__tr|A0A553SNH0|A0A553SNH0_NIACISensordomain-containingdiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_24490PE=4SV=1	REV__tr|A0A553SNH0|A0A553SNH0_NIACISensordomain-containingdiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_24490PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	500.8105163574219	2	500.811116	999.60768	-0.87671	-0.00043907	0.90088	0.00045117	0.024171	1.2105E-05	500.81145799775607	58.682	1.9963	55.902	55.285	57.281	-2.7801					105	38	4	0	0	0	0.34132	1	4266	4266		58.23	7.0372	1	505510	+		35602	30424	29319	29346	39043	39043					0.10786022231263814
LSRKKMML	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LSRKKMML_					1	0	0			REV__ENST00000367765.5_1_1:169951950-169952001:-|nuORF	REV__ENST00000367765.5_1_1:169951950-169952001:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	524.8082275390625	2	524.803922	1047.59329	1.9413	0.0010188	3.51	0.0018421	5.4513	0.0028609	524.8053294267941	108.32	0.90022	108.32	107.9	108.8	0					34	20	2	0	0	0	0.45246	1	12253	12253		82.305	11.009	1	1138900	+		35603	24907	29320	29347	39044	39044					0.07139910487126144
LSRKRIYI	8	Unmodified	_LSRKRIYI_					0	0	0		ENSG00000196074|ENST00000357552|SYCP2	ENSG00000196074|ENST00000357552|SYCP2	ENSG00000196074|ENST00000357552|SYCP2	MULTI-SECPEP	OvCa9_classI_Rep3	3	524.8057250976562	2	524.834926	1047.6553	-1.7431	-0.00091486	0.41255	0.00021652	-1.3306	-0.00069834	524.8352439384707	92.625	0.56503	90.663	90.514	91.079	-1.9617					15	11	2	0	0	0	0.028476	1	5915	5915		58.782	0	1	36908			35604	8559	29321	29348	39045	39045					0.1333772122211485
LSRLAAFL	8	Unmodified	_LSRLAAFL_					0	0	0		DNAH11|p.Y2870F|1|0.06|ENSG00000105877|chr7:21748678-21748678|A/T|missense_variant	DNAH11|p.Y2870F|1|0.06|ENSG00000105877|chr7:21748678-21748678|A/T|missense_variant	DNAH11|p.Y2870F|1|0.06|ENSG00000105877|chr7:21748678-21748678|A/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	445.7777404785156	2	445.776545	889.538538	2.8614	0.0012755	-0.4429	-0.00019744	2.4185	0.0010781	445.77621830132375	95.352	1.2213	95.352	95.075	96.296	0					63	28	3	0	0	0	0.42208	2	10421	10421;10453		85.359	10.843	1	5581100			35605	748	29322	29349	39046;39047	39046					0.089349830023707
LSRLEVRSH	9	Unmodified	_LSRLEVRSH_					0	0	0		ENST00000265109.7_1_5:34824408-34824441:+|nuORF	ENST00000265109.7_1_5:34824408-34824441:+|nuORF	ENST00000265109.7_1_5:34824408-34824441:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.8258666992188	2	548.814722	1095.61489	-0.33893	-0.00018601	3.4637	0.0019009	3.1248	0.0017149	548.8164795774206	58.068	1.3575	54.723	54.444	55.802	-3.3449					55	26	3	0	0	0	0.027462	1	3778	3778		26.693	0	1	168800			35606	9945	29323	29350	39048	39048					0.0709075483171091
LSRLEVRSH	9	Unmodified	_LSRLEVRSH_					0	0	0		ENST00000265109.7_1_5:34824408-34824441:+|nuORF	ENST00000265109.7_1_5:34824408-34824441:+|nuORF	ENST00000265109.7_1_5:34824408-34824441:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	548.814722	1095.61489	-0.37552	-0.00020609	3.7498	0.0020579	3.3743	0.0018518	548.8166505559576	57.227	1.5488	54.435	54.129	55.677	-2.7921	-0.14434	7.4215E-05	NaN	19.997	69	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138640			35607	9945	29323	29350							0.0709075483171091
LSRLFINLY	9	Unmodified	_LSRLFINLY_					0	0	0			REV__tr|A0A7D6ZTP0|A0A7D6ZTP0_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02335PE=3SV=1	REV__tr|A0A7D6ZTP0|A0A7D6ZTP0_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02335PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	569.835205078125	2	569.834591	1137.65463	-0.6563	-0.00037398	-0.12934	-7.3703E-05	-0.78564	-0.00044768	569.8345222869018	99.284	4.3485	97.599	97.322	101.67	-1.685					272	84	6	0	0	0	0.22621	1	6808	6808		71.877	9.7701	1	12084000	+		35608	32207	29324	29351	39049	39049					0.09130881782402867
LSRLIQRP	8	Unmodified	_LSRLIQRP_					0	0	0			REV__ENSG00000113555|ENST00000231484|PCDH12	REV__ENSG00000113555|ENST00000231484|PCDH12	MULTI-SECPEP	OvCa9_classI_Rep2	2	491.7689208984375	2	491.811451	981.608348	0.049206	2.42E-05	0.080832	3.9754E-05	0.13004	6.3954E-05	491.8114211332408	67.316	0.49561	64.655	64.495	64.991	-2.661					16	9	2	0	0	0	0.028476	1	5291	5291		37.159	3.6435	1	14137	+		35609	18155	29325	29352	39050	39050					0.11680861670981812
LSRLISRIRI	10	Unmodified	_LSRLISRIRI_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3;REV__nc|ENSG00000198626|Q92736-2|RYR2	REV__nc|ENSG00000198838|Q15413-2|RYR3	MULTI-MSMS	OvCa9_classI_Rep2	2	409.608154296875	3	409.606701	1225.79827	0.6889	0.00028218	2.4344	0.00099713	3.1233	0.0012793	409.60766459120623	104.29	12.102	103.72	103.28	115.38	-0.57639					699	244	5	0	0	0	0.59751	1	9652	9652		42.338	0.91146	1	1628000	+		35610	23074;23038	29326	29353	39051	39051					0.1944072861335826
LSRLISRIRI	10	Unmodified	_LSRLISRIRI_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3;REV__nc|ENSG00000198626|Q92736-2|RYR2	REV__nc|ENSG00000198838|Q15413-2|RYR3	MULTI-MSMS	OvCa9_classI_Rep4_	4	409.6080627441406	3	409.606701	1225.79827	0.55097	0.00022568	2.443	0.0010007	2.994	0.0012264	409.60762934156605	108.64	8.1164	106.92	106.42	114.53	-1.7256					461	158	5	0	0	0	0.6079	2	9968	9968;10053		41.08	5.7488	1	863570	+		35611	23074;23038	29326	29353	39052;39053	39052					0.1944072861335826
LSRLKAHQL	9	Unmodified	_LSRLKAHQL_					0	0	0		ENSG00000130182|ENST00000576985|ZSCAN10;nc|ENSG00000130182|Q96SZ4-3|ZSCAN10;nc|ENSG00000130182|Q96SZ4|ZSCAN10	ENSG00000130182|ENST00000576985|ZSCAN10	ENSG00000130182|ENST00000576985|ZSCAN10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.7989501953125	2	533.330008	1064.64546	-1.9397	-0.0010345	1.6712	0.00089129	-0.26849	-0.00014319	533.3307240184657	65.953	1.3178	62.468	62.179	63.496	-3.4854					47	26	3	0	0	0	0.027462	1	4851	4851		23.042	3.939	1	266580			35612	3965	29327	29354	39054	39054					0.11572533216735792
LSRLLGKLPE	10	Unmodified	_LSRLLGKLPE_					0	0	0		ENSG00000123358|ENST00000394825|NR4A1;nc|ENSG00000123358|P22736-2|NR4A1	ENSG00000123358|ENST00000394825|NR4A1	ENSG00000123358|ENST00000394825|NR4A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.3521728515625	2	563.353148	1124.69174	0.72344	0.00040755	-1.5701	-0.00088453	-0.84668	-0.00047698	563.3523799001858	117.47	3.3994	116.13	115.53	118.93	-1.3452					169	64	5	0	0	0	0.50999	1	10982	10982		52.937	0	1	2980000			35613	3591	29328	29355	39055	39055					0.13438553328182934
LSRLMRYL	8	Unmodified	_LSRLMRYL_					0	0	0			REV__ENSG00000085998|ENST00000371984|POMGNT1	REV__ENSG00000085998|ENST00000371984|POMGNT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.8639526367188	2	526.307687	1050.60082	-2.5411	-0.0013374	-3.498	-0.001841	-6.0391	-0.0031784	526.3056579035881	104.25	0.89212	104.25	103.69	104.58	0					48	20	3	0	0	0	0.028476	1	11626	11626		21.96	3.6355	1	384880	+		35614	17143	29329	29356	39056	39056					0.07754386079045616
LSRLNETLV	9	Unmodified	_LSRLNETLV_					0	0	0			REV__tr|A0A7D6ZV17|A0A7D6ZV17_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12495PE=4SV=1	REV__tr|A0A7D6ZV17|A0A7D6ZV17_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12495PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.737060546875	2	522.806031	1043.59751	-0.24264	-0.00012685	-1.1566	-0.00060468	-1.3992	-0.00073153	522.8054244932734	61.461	0.99871	58.003	57.717	58.715	-3.4577					43	20	3	0	0	0	0.027462	1	4225	4225		42.864	3.6114	1	615850	+		35615	32235	29330	29357	39057	39057					0.07745414506052839
LSRLPGATLS	10	Unmodified	_LSRLPGATLS_					0	0	0		ENST00000495067.1_1_7:87505864-87507564:+|nuORF;ENST00000486925.1_1_7:87505915-87514494:+|nuORF	ENST00000495067.1_1_7:87505864-87507564:+|nuORF	ENST00000495067.1_1_7:87505864-87507564:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.80023193359375	2	507.800749	1013.58694	-1.3545	-0.0006878	0.98637	0.00050088	-0.3681	-0.00018692	507.8011650052205	54.128	1.8434	51.314	50.529	52.372	-2.8139					84	36	4	0	0	0	0.59317	1	3721	3721		42.864	0.46813	1	436050			35616	12631	29331	29358	39058	39058					0.08069431851606623
LSRLSDPQV	9	Unmodified	_LSRLSDPQV_					0	0	0		ENSG00000132164|ENST00000254488|SLC6A11	ENSG00000132164|ENST00000254488|SLC6A11	ENSG00000132164|ENST00000254488|SLC6A11	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3033142089844	2	507.782556	1013.55056	0.087001	4.4178E-05	0.65919	0.00033473	0.7462	0.0003789	508.28494477459986	98.058	0.7562	95.679	95.418	96.175	-2.3786					20	14	2	0	0	0	0.027411	1	8726	8726		58.23	0	1	27237			35617	4113	29332	29359	39059	39059					0.044325549548943854
LSRLSGKLPK	10	Unmodified	_LSRLSGKLPK_					0	0	0			REV__nc|ENSG00000134121|O00533|CHL1	REV__nc|ENSG00000134121|O00533|CHL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7511596679688	2	549.853316	1097.69208	0.74348	0.00040881	0.93903	0.00051633	1.6825	0.00092514	549.8537292579613	101.44	0.37188	101.44	101.23	101.61	0					12	8	2	0	0	0	0.026931	1	11280	11280		37.812	5.8567	1	386120	+		35618	19176	29333	29360	39060	39060					0.14713973048037587
LSRLSGKPGVD	11	Unmodified	_LSRLSGKPGVD_					0	0	0		ENSG00000107890|ENST00000376087|ANKRD26	ENSG00000107890|ENST00000376087|ANKRD26	ENSG00000107890|ENST00000376087|ANKRD26	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.2788696289062	2	564.822212	1127.62987	2.4032	0.0013574	1.4235	0.00080403	3.8267	0.0021614	564.8227862355322	87.103	0.32627	87.103	86.931	87.257	0					12	7	2	0	0	0	0.025487	1	9204	9204		25.126	0	1	254390			35619	2626	29334	29361	39061	39061					0.07116201909047959
LSRLVRHRSL	10	Unmodified	_LSRLVRHRSL_					0	0	0			REV__ENSG00000182261|ENST00000691676|NLRP10	REV__ENSG00000182261|ENST00000691676|NLRP10	MULTI-MSMS	OvCa9_classI_Rep2	2	412.9266662597656	3	412.926434	1235.75747	-0.25244	-0.00010424	0.16708	6.899E-05	-0.085366	-3.525E-05	412.92657077571874	54.81	2.7333	51.996	51.573	54.306	-2.8139					157	54	5	0	0	0	0.6898	1	3847	3847		31.634	3.5528	1	2429000	+		35620	22276	29335	29362	39062	39062					0.1490238729372777
LSRMFVSIL	9	Unmodified	_LSRMFVSIL_					0	0	0			REV__TRRAP|p.Q3700Cfs*14|1|0.37|ENSG00000196367|chr7:99011251-99011252|-/GTGCGTTAAATCTGTCACCAGAA|frameshift_variant	REV__TRRAP|p.Q3700Cfs*14|1|0.37|ENSG00000196367|chr7:99011251-99011252|-/GTGCGTTAAATCTGTCACCAGAA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	533.3090209960938	2	533.309895	1064.60524	1.7386	0.0009272	-2.6638	-0.0014207	-0.92527	-0.00049345	533.3083747029332	116.75	0.67096	116.75	116.37	117.04	0					25	13	2	0	0	0	0.28934	1	13360	13360		64.207	3.2353	1	470060	+		35621	22817	29336	29363	39063	39063					0.07551850501977242
LSRNKPLV	8	Unmodified	_LSRNKPLV_					0	0	0			REV__ENST00000289371.10_1_2:99976748-99976944:+|nuORF	REV__ENST00000289371.10_1_2:99976748-99976944:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.769775390625	2	463.792727	925.5709	-0.17522	-8.1267E-05	-0.95124	-0.00044118	-1.1265	-0.00052244	463.79248737875497	56.847	1.6282	53.502	53.07	54.698	-3.3449					35	31	2	0	0	0	0.028476	1	3730	3730		38.806	1.647	1	39341	+		35622	24148	29337	29364	39064	39064					0.10513770405361811
LSRNRRIL	8	Unmodified	_LSRNRRIL_					0	0	0		ENST00000554562.1_1_14:94563300-94568322:+|nuORF	ENST00000554562.1_1_14:94563300-94568322:+|nuORF	ENST00000554562.1_1_14:94563300-94568322:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.2987670898438	2	514.327799	1026.64105	0.69766	0.00035883	1.9944	0.0010258	2.6921	0.0013846	514.329024327747	104	0.57492	102.56	102.34	102.92	-1.4347					20	10	3	0	0	0	0.028476	1	7230	7230		38.806	20.544	1	24150			35623	13636	29338	29365	39065	39065					0.12879068793859005
LSRPFLRA	8	Unmodified	_LSRPFLRA_					0	0	0		ENST00000442418.5_1_1:95207954-95285609:-|nuORF;ENST00000421997.5_1_1:95145158-95285609:-|nuORF	ENST00000442418.5_1_1:95207954-95285609:-|nuORF	ENST00000442418.5_1_1:95207954-95285609:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.2621765136719	2	480.292894	958.571235	-0.34646	-0.0001664	4.4236	0.0021246	4.0771	0.0019582	480.2968758657031	46.858	0.40987	43.786	43.501	43.911	-3.0724					15	7	3	0	0	0	0.028476	1	2486	2486		30.504	0	1	19026			35624	11690	29339	29366	39066	39066					0.0902919012522716
LSRPPCTSL	9	Carbamidomethyl (C)	_LSRPPC(Carbamidomethyl (C))TSL_	LSRPPC(1)TSL		LSRPPC(88)TSL		0	1	0		ENST00000445369.2_1_16:3062740-3063043:+|nuORF	ENST00000445369.2_1_16:3062740-3063043:+|nuORF	ENST00000445369.2_1_16:3062740-3063043:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7890014648438	2	515.771134	1029.52771	-0.30314	-0.00015635	0.62626	0.00032301	0.32312	0.00016666	516.2734137343514	79.007	0.33247	76.255	76.038	76.37	-2.7514					10	6	2	0	0	0	0.027232	1	6394	6394		87.754	27.46	1	20661			35625	11977	29340	29367	39067	39067	133				0.014132125657624783
LSRPVLPASP	10	Unmodified	_LSRPVLPASP_					0	0	0		ENST00000329146.8_1_14:105946048-105946348:+|nuORF	ENST00000329146.8_1_14:105946048-105946348:+|nuORF	ENST00000329146.8_1_14:105946048-105946348:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	518.8111572265625	2	518.811116	1035.60768	-0.049483	-2.5672E-05	-1.1441	-0.00059357	-1.1936	-0.00061924	518.8105741700431	88.52	3.827	86.389	85.803	89.63	-2.1309					168	75	5	0	0	0	0.22663	2	5423	5417;5423		90.37	5.209	1	8533700			35626	10427	29341	29368	39068;39069	39069					0.09130022231261137
LSRQAVGLV	9	Unmodified	_LSRQAVGLV_					0	0	0			REV__ESRRA|p.D344Vfs*59|1|0.04|ENSG00000173153|chr11:64315725-64315725|A/-|frameshift_variant	REV__ESRRA|p.D344Vfs*59|1|0.04|ENSG00000173153|chr11:64315725-64315725|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	471.7913818359375	2	471.790184	941.565815	2.7072	0.0012772	-0.67893	-0.00032031	2.0283	0.00095692	471.7898142974739	75.388	1.3187	75.388	74.962	76.28	0					78	32	4	0	0	0	0.13504	1	7492	7492		87.696	5.3914	1	21316000	+		35627	21751	29342	29369	39070	39070					0.09269466542764349
LSRQEAVAL	9	Unmodified	_LSRQEAVAL_					0	0	0		nc|ENSG00000167193|P46108-2|CRK;ENSG00000167193|ENST00000300574|CRK	nc|ENSG00000167193|P46108-2|CRK	nc|ENSG00000167193|P46108-2|CRK	MULTI-MSMS	OvCa9_classI_Rep2	2	493.7869567871094	2	493.785099	985.555644	-0.2692	-0.00013293	3.7452	0.0018493	3.476	0.0017164	493.7867393201552	121.47	1.3357	121.27	120.95	122.29	-0.19718					61	26	3	0	0	0	0.35444	1	11729	11729		56.721	1.2168	1	176810			35628	6768	29343	29370	39071	39071					0.062288588175078985
LSRQPTVKL	9	Unmodified	_LSRQPTVKL_					0	0	0			REV__ENST00000597909.5_2_19:53394572-53400921:-|nuORF	REV__ENST00000597909.5_2_19:53394572-53400921:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.2975463867188	2	521.324391	1040.63423	1.5317	0.00079852	3.725	0.0019419	5.2567	0.0027405	521.3262138874225	137.62	0.85703	137.62	137.3	138.16	0					35	18	2	0	0	0	0.027426	1	16061	16061		66.429	2.222	1	478660	+		35629	28005	29344	29371	39072	39072					0.11553711122610366
LSRREIPS	8	Unmodified	_LSRREIPS_					0	0	0			REV__nc|ENSG00000283228|O00305-4|CACNB4	REV__nc|ENSG00000283228|O00305-4|CACNB4	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.2806091308594	2	479.277441	956.540328	1.2379	0.0005933	2.8882	0.0013843	4.1261	0.0019776	479.2787787537371	96.937	2.2657	94.512	93.76	96.025	-2.4256					110	44	4	0	0	0	0.59148	1	8552	8552		65.803	2.4969	1	2968100	+		35630	22290	29345	29372	39073	39073					0.06031992020314192
LSRRFQKVKL	10	Unmodified	_LSRRFQKVKL_					0	0	0		ENSG00000169221|ENST00000409939|TBC1D10B;ENST00000478158.5_1_16:30371114-30377040:-|nuORF	ENSG00000169221|ENST00000409939|TBC1D10B	ENSG00000169221|ENST00000409939|TBC1D10B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	424.8929748535156	3	425.606701	1273.79827	-0.73728	-0.00031379	0.23517	0.00010009	-0.50211	-0.0002137	425.6066955231877	41.674	0.97282	38.693	38.388	39.361	-2.9804					38	18	3	0	0	0	0.027142	1	1911	1911		15.333	8.6735	1	63827			35631	6989	29346	29373	39074	39074					0.17232728613339532
LSRRFQKVKL	10	Unmodified	_LSRRFQKVKL_					0	0	0		ENSG00000169221|ENST00000409939|TBC1D10B;ENST00000478158.5_1_16:30371114-30377040:-|nuORF	ENSG00000169221|ENST00000409939|TBC1D10B	ENSG00000169221|ENST00000409939|TBC1D10B	MULTI-MATCH	OvCa9_classI_Rep2	2		3	425.606701	1273.79827	0.70427	0.00029974	-0.65099	-0.00027707	0.05328	2.2676E-05	425.60626255520816	41.543	1.0345	38.833	38.34	39.374	-2.7097	0.069908	-0.00075116	NaN	15.333	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21239			35632	6989	29346	29373							0.17232728613339532
LSRRGPGGRE	10	Unmodified	_LSRRGPGGRE_					0	0	0		ENST00000545654.5_1_11:95522396-95522864:-|nuORF	ENST00000545654.5_1_11:95522396-95522864:-|nuORF	ENST00000545654.5_1_11:95522396-95522864:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.8047485351562	2	542.802146	1083.58974	0.68478	0.0003717	0.78073	0.00042378	1.4655	0.00079548	542.8024828624872	86.214	1.0363	83.568	83.293	84.33	-2.6463					58	20	4	0	0	0	0.45822	1	7299	7299		60.118	0.18749	1	934860			35633	13523	29347	29374	39075	39075					0.05128700029149513
LSRRKRHD	8	Unmodified	_LSRRKRHD_					0	0	0		ENST00000520448.5_1_8:24181385-24209525:+|nuORF;nc|ENSG00000042980|Q9UKQ2-2|ADAM28;ADAM28|p.V680Cfs*57|1|0.03|ENSG00000042980|chr8:24349909-24349910|-/C|frameshift_variant;ENSG00000042980|ENST00000265769|ADAM28	ENST00000520448.5_1_8:24181385-24209525:+|nuORF	ENST00000520448.5_1_8:24181385-24209525:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	533.812744140625	2	534.312681	1066.61081	-0.14442	-7.7167E-05	2.7412	0.0014646	2.5968	0.0013875	534.3141629394653	95.982	0.64874	94.153	94.075	94.724	-1.8286					16	12	2	0	0	0	0.028476	1	6278	6278		40.573	11.423	1	159210			35634	28	29348	29375	39076	39076					0.08016710128640625
LSRRLFFFFF	10	Unmodified	_LSRRLFFFFF_					0	0	0			REV__chr14:21386176-21389175|150|10.97|0.58|4.25|-|2|TE_info:AluSg,AluSg_dup26285,Alu,SINE,donor,+,21389175,21389317|CHD8,None|1	REV__chr14:21386176-21389175|150|10.97|0.58|4.25|-|2|TE_info:AluSg,AluSg_dup26285,Alu,SINE,donor,+,21389175,21389317|CHD8,None|1	MULTI-MSMS	OvCa99_classI_Rep5	1	460.5924987792969	3	460.592281	1378.75501	-0.29257	-0.00013475	-3.2532	-0.0014984	-3.5457	-0.0016331	460.5907513486629	104.77	1.6907	104.77	104.36	106.05	0					99	38	5	0	0	0	0.61634	1	11767	11767		40.058	1.3046	1	6280900	+		35635	15906	29349	29376	39077	39077					0.0807853883604821
LSRRRKKRT	9	Unmodified	_LSRRRKKRT_					0	0	0		nc|ENSG00000143190|P14859-4|POU2F1;nc|ENSG00000143190|P14859-5|POU2F1;nc|ENSG00000143190|P14859-3|POU2F1;nc|ENSG00000143190|P14859|POU2F1;nc|ENSG00000143190|P14859-2|POU2F1;ENSG00000143190|ENST00000367866|POU2F1	nc|ENSG00000143190|P14859-4|POU2F1;nc|ENSG00000143190|P14859-5|POU2F1	nc|ENSG00000143190|P14859-5|POU2F1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	401.2109069824219	3	400.930178	1199.76871	1.9387	0.00077729	1.0719	0.00042977	3.0107	0.0012071	400.93043414904884	20.776	0.38596	19.437	19.311	19.697	-1.3386					10	7	2	0	0	0	0.027462	1	77	77		12.207	0	1	8430.3			35636	15072;5018	29350	29377	39078	39078					0.17681209387887975
LSRRRQVAL	9	Unmodified	_LSRRRQVAL_					0	0	0		nc|ENSG00000149091|Q13574-1|DGKZ	nc|ENSG00000149091|Q13574-1|DGKZ	nc|ENSG00000149091|Q13574-1|DGKZ	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.8309936523438	2	549.846356	1097.67816	-0.35668	-0.00019612	-2.665	-0.0014653	-3.0217	-0.0016614	549.8449753318811	83.207	0.34205	80.538	80.431	80.773	-2.6688					9	6	2	0	0	0	0.027462	1	6938	6938		24.203	0	1	14907			35637	15083	29351	29378	39079	39079					0.1332274033959493
LSRSNSSLL	9	Unmodified	_LSRSNSSLL_					0	0	0			REV__ENST00000497878.5_1_19:2988043-2994999:+|nuORF	REV__ENST00000497878.5_1_19:2988043-2994999:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.2925109863281	2	488.774731	975.534909	0.17894	8.7463E-05	-1.9015	-0.00092941	-1.7226	-0.00084195	488.7735922959711	105.53	0.34597	105.53	105.36	105.7	0					10	7	2	0	0	0	0.027353	1	11858	11858		82.241	0	1	187570	+		35638	17696	29352	29379	39080	39080					0.0461626843787144
LSRSPGLAVLL	11	Unmodified	_LSRSPGLAVLL_					0	0	0		ENST00000510733.1_1_4:155665168-155665375:+|nuORF	ENST00000510733.1_1_4:155665168-155665375:+|nuORF	ENST00000510733.1_1_4:155665168-155665375:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.351806640625	2	563.353148	1124.69174	0.72344	0.00040755	-1.5701	-0.00088453	-0.84668	-0.00047698	563.3523799001858	117.47	3.3994	116.13	115.53	118.93	-1.3452					169	64	5	0	0	0	0.11855	1	11055	11055		93.143	18.888	1	2980000			35639	12976	29353	29380	39081	39081					0.1343855332820567
LSRSPHHI	8	Unmodified	_LSRSPHHI_					0	0	0		ENST00000460796.1_1_3:156893176-156957565:+|nuORF;ENST00000475102.1_1_3:156948072-156957565:+|nuORF	ENST00000460796.1_1_3:156893176-156957565:+|nuORF	ENST00000460796.1_1_3:156893176-156957565:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.7648620605469	2	473.764501	945.514448	-0.091647	-4.3419E-05	-2.0802	-0.00098552	-2.1718	-0.0010289	473.76356368919807	48.486	1.8562	45.379	44.684	46.54	-3.1077					89	35	5	0	0	0	0.59148	1	2686	2686		65.803	2.2693	1	576010			35640	12158	29354	29381	39082	39082					0.03951142568701016
LSRSRPKRRYL	11	Unmodified	_LSRSRPKRRYL_					0	0	0			REV__ENSG00000091947|ENST00000206380|TMEM101	REV__ENSG00000091947|ENST00000206380|TMEM101	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.9588928222656	3	477.960026	1430.85825	-5.9329	-0.0028357	4.3566	0.0020823	-1.5763	-0.00075339	478.2967649500702	159.34	2.8374	157.75	156.72	159.56	-1.5858					174	71	3	0	0	0	0.72548	1	15778	15778		9.2118	2.5522	1	81225	+		35641	17258	29355	29382	39083	39083					0.16005419276598332
LSRTFYLID	9	Unmodified	_LSRTFYLID_					0	0	0		ENST00000518121.5_1_8:38250464-38262066:+|nuORF;nc|ENSG00000165046|Q2VYF4-4|LETM2;nc|ENSG00000165046|Q2VYF4-3|LETM2;nc|ENSG00000165046|Q2VYF4-2|LETM2;ENSG00000165046|ENST00000379957|LETM2	ENST00000518121.5_1_8:38250464-38262066:+|nuORF	ENST00000518121.5_1_8:38250464-38262066:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	563.3524169921875	2	564.308406	1126.60226	-0.6758	-0.00038136	0.73579	0.00041521	0.059996	3.3856E-05	564.3086185883743	116.26	1.9312	116.14	115.74	117.67	-0.11777					104	38	4	0	0	0	0.027402	1	11091	11091		87.754	25.647	1	306090			35642	6513	29356	29383	39084	39084					0.04402298648778924
LSRTIGILL	9	Unmodified	_LSRTIGILL_					0	0	0		tr|A0A7D6ZHX8|A0A7D6ZHX8_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04745PE=4SV=1	tr|A0A7D6ZHX8|A0A7D6ZHX8_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04745PE=4SV=1	tr|A0A7D6ZHX8|A0A7D6ZHX8_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04745PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	493.3241271972656	2	493.32386	984.633166	0.32462	0.00016014	-0.47453	-0.0002341	-0.14991	-7.3954E-05	493.3234613432452	114.6	1.4806	114.48	114.16	115.64	-0.11777					70	29	3	0	0	0	0.49652	1	10933	10933		42.864	3.6114	1	205500			35643	35594	29357	29384	39085	39085					0.1402349675371397
LSRTIPKV	8	Unmodified	_LSRTIPKV_					0	0	0		tr|A0A553SKD9|A0A553SKD9_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_18645PE=4SV=1	tr|A0A553SKD9|A0A553SKD9_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_18645PE=4SV=1	tr|A0A553SKD9|A0A553SKD9_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_18645PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.7355651855469	2	457.295102	912.575651	0.59843	0.00027366	-0.93233	-0.00042635	-0.3339	-0.00015269	457.2945035701025	63.292	0.31449	63.292	63.1	63.414	0					10	7	2	0	0	0	0.028476	1	5695	5695		35.618	10.044	1	207930			35644	33608	29358	29385	39086	39086					0.11586654548125352
LSRTSSLLP	9	Unmodified	_LSRTSSLLP_					0	0	0		ENSG00000221829|ENST00000378643|FANCG	ENSG00000221829|ENST00000378643|FANCG	ENSG00000221829|ENST00000378643|FANCG	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.28900146484375	2	487.287474	972.560395	1.1989	0.00058423	-1.8531	-0.00090301	-0.65419	-0.00031878	487.286391356687	84.786	0.72565	82.139	81.884	82.609	-2.6472					32	14	3	0	0	0	0.33652	1	7102	7102		58.782	5.8453	1	223970			35645	9228	29359	29386	39087	39087					0.0730174296027144
LSRVKRFVFS	10	Unmodified	_LSRVKRFVFS_					0	0	0			REV__ENSG00000123983|ENST00000357430|ACSL3	REV__ENSG00000123983|ENST00000357430|ACSL3	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8685913085938	2	619.87204	1237.72953	-3.1194	-0.0019336	-1.2014	-0.00074472	-4.3208	-0.0026783	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.79917	1	15233	15233		19.104	0	1	806750	+		35646	18656	29360	29387	39088	39088					0.1201706431365892
LSRWKLAI	8	Unmodified	_LSRWKLAI_					0	0	0		ATP13A3|p.I686Mfs*20|1|0.05|ENSG00000133657|chr3:194437157-194437158|-/CACATTGAAATACAATTCTATCC|frameshift_variant;nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3	ATP13A3|p.I686Mfs*20|1|0.05|ENSG00000133657|chr3:194437157-194437158|-/CACATTGAAATACAATTCTATCC|frameshift_variant	ATP13A3|p.I686Mfs*20|1|0.05|ENSG00000133657|chr3:194437157-194437158|-/CACATTGAAATACAATTCTATCC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.76776123046875	2	493.810919	985.607286	-0.010031	-4.9536E-06	1.1514	0.00056855	1.1413	0.0005636	493.81170418026755	69.022	0.29243	65.531	65.362	65.654	-3.4902					7	5	2	0	0	0	0.028476	1	5161	5161		71.296	7.9894	1	12587			35647	128	29361	29388	39089	39089					0.11390647302073376
LSRWKLAI	8	Unmodified	_LSRWKLAI_					0	0	0		ATP13A3|p.I686Mfs*20|1|0.05|ENSG00000133657|chr3:194437157-194437158|-/CACATTGAAATACAATTCTATCC|frameshift_variant;nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3	ATP13A3|p.I686Mfs*20|1|0.05|ENSG00000133657|chr3:194437157-194437158|-/CACATTGAAATACAATTCTATCC|frameshift_variant	ATP13A3|p.I686Mfs*20|1|0.05|ENSG00000133657|chr3:194437157-194437158|-/CACATTGAAATACAATTCTATCC|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	493.810919	985.607286	0.51379	0.00025371	-3.8386	-0.0018955	-3.3248	-0.0016418	493.8088674663537	68.702	0.50122	65.888	65.611	66.112	-2.8144	0.1784	-0.0010818	NaN	71.296	16	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19564			35648	128	29361	29388							0.11390647302073376
LSRYAVGVGF	10	Unmodified	_LSRYAVGVGF_					0	0	0			REV__ENSG00000105255|ENST00000221856|FSD1	REV__ENSG00000105255|ENST00000221856|FSD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.77783203125	2	534.795466	1067.57638	-1.2697	-0.00067905	3.1384	0.0016784	1.8686	0.00099933	534.7972468043904	76.7	0.52582	73.761	73.645	74.171	-2.9389					18	10	2	0	0	0	0.026752	1	6103	6103		20.947	0	1	70675	+		35649	17707	29362	29389	39090	39090					0.045294491971844764
LSRYDTSTLD	10	Unmodified	_LSRYDTSTLD_					0	0	0			REV__nc|ENSG00000244754|Q92802-2|N4BP2L2;REV__nc|ENSG00000244754|Q92802-3|N4BP2L2	REV__nc|ENSG00000244754|Q92802-3|N4BP2L2	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.3449096679688	2	585.785492	1169.55643	0.94743	0.00055499	0.61705	0.00036146	1.5645	0.00091645	585.7859070530394	138.98	0.77094	138.98	138.59	139.37	0					30	15	3	0	0	0	0.026931	1	16223	16223		23.523	0.94304	1	51813	+		35650	29165;29166	29363	29390	39091	39091					-0.021563913241152477
LSSAKLTLSI	10	Unmodified	_LSSAKLTLSI_					0	0	0			REV__ENST00000591806.5_1_19:1376686-1377088:+|nuORF	REV__ENST00000591806.5_1_19:1376686-1377088:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.7640991210938	2	516.818607	1031.62266	-0.36479	-0.00018853	2.977	0.0015385	2.6122	0.00135	516.8198229705532	56.642	0.24663	56.642	56.498	56.744	0					7	5	2	0	0	0	0.026867	1	4704	4704		35.152	4.8343	1	189440	+		35651	27935	29364	29391	39092	39092					0.108114693086236
LSSATIATII	10	Unmodified	_LSSATIATII_					0	0	0		tr|A0A7D6ZVX2|A0A7D6ZVX2_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15485PE=3SV=1	tr|A0A7D6ZVX2|A0A7D6ZVX2_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15485PE=3SV=1	tr|A0A7D6ZVX2|A0A7D6ZVX2_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15485PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.2984924316406	2	495.297507	988.580462	0.62327	0.0003087	-1.1454	-0.00056733	-0.52216	-0.00025862	495.296795507755	89.52	1.9685	86.945	86.656	88.624	-2.575					102	38	4	0	0	0	0.37918	1	7744	7744		71.296	0	1	1899800			35652	35818	29365	29392	39093	39093					0.08571493900228688
LSSAVLIWV	9	Unmodified	_LSSAVLIWV_					0	0	0			REV__nc|ENSG00000172005|P21145-2|MAL	REV__nc|ENSG00000172005|P21145-2|MAL	MULTI-MSMS	OvCa99_classI_Rep5	1	494.2958984375	2	494.29731	986.580068	-0.39339	-0.00019445	-3.7967	-0.0018767	-4.1901	-0.0020712	494.2952780265388	56.281	0.81703	56.281	55.845	56.662	0					39	19	3	0	0	0	0.085069	1	4670	4670		101.21	10.611	1	1136500	+		35653	21666	29366	29393	39094	39094					0.08624118971044936
LSSFLNFPL	9	Unmodified	_LSSFLNFPL_					0	0	0		ENST00000419165.5_1_X:103220278-103220434:+|nuORF	ENST00000419165.5_1_X:103220278-103220434:+|nuORF	ENST00000419165.5_1_X:103220278-103220434:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.8121948242188	2	519.286943	1036.55933	0.15399	7.9965E-05	1.1098	0.0005763	1.2638	0.00065626	519.2873958557343	160.52	0.55249	160.52	160.26	160.81	0					27	10	3	0	0	0	0.027462	1	18802	18802		31.955	0	1	256920			35654	11651	29367	29394	39095	39095					0.042515285913850676
LSSGNLPF	8	Unmodified	_LSSGNLPF_					0	0	0			REV__ENST00000534491.5_1_11:3114755-3187956:-|nuORF	REV__ENST00000534491.5_1_11:3114755-3187956:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	417.723388671875	2	417.721436	833.428318	2.6523	0.0011079	-0.75504	-0.00031539	1.8973	0.00079253	417.7210167129922	137.01	0.62527	137.01	136.77	137.4	0					25	12	3	0	0	0	0.67745	1	15981	15981		47.916	0	1	93182	+		35655	16548	29368	29395	39096	39096					0.004941379433262227
LSSIEVKKEK	10	Unmodified	_LSSIEVKKEK_					0	0	0			REV__nc|ENSG00000144674|Q13439-3|GOLGA4	REV__nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-SECPEP	OvCa9_classI_Rep3	3	580.8301391601562	2	580.847896	1159.68124	-1.7199	-0.00099898	-0.96498	-0.00056051	-2.6848	-0.0015595	580.8476789312996	75.967	0.25472	73.595	73.518	73.773	-2.3715					11	4	3	0	0	0	0.026826	1	3881	3881		44.377	16.495	1	47765	+		35656	19927	29369	29396	39097	39097					0.10778525883074508
LSSIFNIN	8	Unmodified	_LSSIFNIN_					0	0	0			REV__ENST00000477063.5_1_3:122928052-122962678:+|nuORF	REV__ENST00000477063.5_1_3:122928052-122962678:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	453.7754211425781	2	454.247818	906.481082	0.58211	0.00026442	-0.0035289	-1.603E-06	0.57858	0.00026282	454.2475954309611	56.527	1.7768	53.233	52.819	54.596	-3.2944					87	34	4	0	0	0	0.028476	1	3693	3693		51.335	0	1	553480	+		35657	18546	29370	29397	39098	39098					0.024100960061218757
LSSIIPSKDIK	11	Unmodified	_LSSIIPSKDIK_					0	0	0		tr|A0A7D7A5I5|A0A7D7A5I5_9CLOTHPrkinase/phosphorylaseOS=ClostridiumintestinaleOX=36845GN=hprKPE=3SV=1	tr|A0A7D7A5I5|A0A7D7A5I5_9CLOTHPrkinase/phosphorylaseOS=ClostridiumintestinaleOX=36845GN=hprKPE=3SV=1	tr|A0A7D7A5I5|A0A7D7A5I5_9CLOTHPrkinase/phosphorylaseOS=ClostridiumintestinaleOX=36845GN=hprKPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	401.2436828613281	3	400.911456	1199.71254	1.3628	0.00054637	-3.1736	-0.0012723	-1.8108	-0.00072596	400.91002361674947	22.278	0.23828	22.278	22.142	22.381	0					8	5	2	0	0	0	0.71831	1	195	195		23.378	1.6922	1	17339			35658	36171	29371	29398	39099	39099					0.1206709891716855
LSSILPIK	8	Unmodified	_LSSILPIK_					0	0	0		nc|ENSG00000143970|Q76L83-2|ASXL2;ENSG00000143970|ENST00000435504|ASXL2	nc|ENSG00000143970|Q76L83-2|ASXL2	nc|ENSG00000143970|Q76L83-2|ASXL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	435.7684326171875	2	435.786579	869.558604	0.22571	9.8362E-05	-0.2235	-9.7398E-05	0.0022111	9.6358E-07	435.7863539857862	102.95	1.2541	100.75	100.41	101.67	-2.1994					46	23	3	0	0	0	0.028476	1	9263	9263		24.203	0	1	95660			35659	5112	29372	29399	39100	39100					0.11860733942319257
LSSIPFTAQT	10	Unmodified	_LSSIPFTAQT_					0	0	0			REV__nc|ENSG00000166947|P16452-3|EPB42	REV__nc|ENSG00000166947|P16452-3|EPB42	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.7783203125	2	532.784764	1063.55498	0.24767	0.00013195	-2.7963	-0.0014898	-2.5486	-0.0013579	533.2831816903608	57.852	0.41782	57.852	57.566	57.984	0					13	9	2	0	0	0	0.026994	1	4901	4901		25.574	0	1	106820	+		35660	21241	29373	29400	39101	39101					0.025740193778119647
LSSITACILV	10	Unmodified	_LSSITACILV_					0	0	0		ENST00000465976.1_1_7:86827133-86832342:-|nuORF	ENST00000465976.1_1_7:86827133-86832342:-|nuORF	ENST00000465976.1_1_7:86827133-86832342:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.293212890625	2	510.293911	1018.57327	-0.60264	-0.00030752	-3.5325	-0.0018026	-4.1351	-0.0021101	510.2919760033697	79.571	1.3508	76.82	76.514	77.865	-2.7514					83	27	5	0	0	0	0.58282	1	6459	6459		44.117	1.7207	1	972660			35661	12278	29374	29401	39102	39102					0.06472438028163197
LSSKMYDKIY	10	Unmodified	_LSSKMYDKIY_					0	0	0			REV__ENST00000533567.5_1_13:45912892-45914385:-|nuORF	REV__ENST00000533567.5_1_13:45912892-45914385:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	416.55126953125	3	416.54953	1246.62676	0.22949	9.5595E-05	3.8418	0.0016003	4.0712	0.0016959	416.5510849728193	33.558	0.63397	33.558	33.335	33.969	0					22	12	2	0	0	0	0.59317	1	1548	1548		39.873	2.2733	1	474870	+		35662	27258	29375	29402	39103	39103					0.013311907400293421
LSSKQITLCV	10	Unmodified	_LSSKQITLCV_					0	0	0			REV__ENSG00000156886|ENST00000389202|ITGAD	REV__ENSG00000156886|ENST00000389202|ITGAD	MULTI-MSMS	OvCa99_classI_Rep5	1	546.3102416992188	2	546.310092	1090.60563	0.96724	0.00052841	-2.1147	-0.0011553	-1.1475	-0.00062689	546.3088947594271	132.63	1.9213	132.63	132.23	134.15	0					100	40	5	0	0	0	0.42082	1	15389	15389		65.465	0	1	3254800	+		35663	20502	29376	29403	39104	39104					0.0639522543115163
LSSLFILD	8	Unmodified	_LSSLFILD_					0	0	0		tr|A0A7D6W2Y0|A0A7D6W2Y0_9CLOTHAMPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07770PE=3SV=1	tr|A0A7D6W2Y0|A0A7D6W2Y0_9CLOTHAMPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07770PE=3SV=1	tr|A0A7D6W2Y0|A0A7D6W2Y0_9CLOTHAMPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07770PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	453.7754211425781	2	454.260394	906.506234	0.67398	0.00030616	-4.0973	-0.0018612	-3.4233	-0.0015551	454.25840290927596	56.741	1.324	53.4	53.124	54.448	-3.3413					66	25	4	0	0	0	0.028476	1	3693	3693		47.916	0	1	405890			35664	35442	29377	29404	39105	39105					0.04924150808710692
LSSLFILD	8	Unmodified	_LSSLFILD_					0	0	0		tr|A0A7D6W2Y0|A0A7D6W2Y0_9CLOTHAMPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07770PE=3SV=1	tr|A0A7D6W2Y0|A0A7D6W2Y0_9CLOTHAMPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07770PE=3SV=1	tr|A0A7D6W2Y0|A0A7D6W2Y0_9CLOTHAMPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07770PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	454.260394	906.506234	0.72507	0.00032937	-3.7183	-0.0016891	-2.9933	-0.0013597	454.2585706348773	56.15	1.3866	53.346	52.83	54.216	-2.804	-0.027213	0.00013095	NaN	47.916	63	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179650			35665	35442	29377	29404							0.04924150808710692
LSSLKRFF	8	Unmodified	_LSSLKRFF_					0	0	0			REV__ENST00000474157.1_1_7:23286476-23286758:+|nuORF	REV__ENST00000474157.1_1_7:23286476-23286758:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.7549743652344	2	499.295102	996.575651	-0.24662	-0.00012313	-3.7547	-0.0018747	-4.0013	-0.0019978	499.29326265656755	57.577	0.91679	54.232	53.781	54.698	-3.3449					26	17	2	0	0	0	0.028476	1	3748	3748		20.482	0	1	53734	+		35666	26340	29378	29405	39106	39106					0.07722654548126684
LSSLNRHLRAF	11	Unmodified	_LSSLNRHLRAF_					0	0	0		ENSG00000257446|ENST00000547628|ZNF878	ENSG00000257446|ENST00000547628|ZNF878	ENSG00000257446|ENST00000547628|ZNF878	MULTI-SECPEP	OvCa9_classI_Rep2	2	439.24798583984375	3	438.586077	1312.7364	-0.38132	-0.00016724	0.76875	0.00033716	0.38743	0.00016992	438.58652399375484	51.439	0.44471	48.626	48.453	48.897	-2.8129					13	8	2	0	0	0	0.026277	1	3402	3402		17.833	1.1158	1	24160			35667	9473	29379	29406	39107	39107					0.09254377194224617
LSSLSGSLIL	10	Unmodified	_LSSLSGSLIL_					0	0	0			REV__ENST00000483662.2_1_11:70266591-70267883:+|nuORF	REV__ENST00000483662.2_1_11:70266591-70267883:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	495.2955017089844	2	495.297507	988.580462	1.9287	0.00095527	-2.4176	-0.0011974	-0.48887	-0.00024214	495.29619133273764	88.345	1.7759	86.977	86.641	88.417	-1.3676					106	35	4	0	0	0	0.28791	1	7795	7795		82.305	11.009	1	1318600	+		35668	26531	29380	29407	39108	39108					0.08571493900251426
LSSLVELSAH	10	Unmodified	_LSSLVELSAH_					0	0	0			REV__tr|A0A553SNQ9|A0A553SNQ9_NIACISRPBCCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25035PE=3SV=1	REV__tr|A0A553SNQ9|A0A553SNQ9_NIACISRPBCCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25035PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.2916259765625	2	528.290214	1054.56587	1.4671	0.00077506	-2.5573	-0.001351	-1.0902	-0.00057594	528.2887860998823	136.91	1.0262	135.37	135.08	136.11	-1.5437					37	20	3	0	0	0	0.69986	1	13309	13309		30.504	2.2494	1	33606	+		35669	30440	29381	29408	39109	39109					0.04077421752072041
LSSMRLLLS	9	Unmodified	_LSSMRLLLS_					0	0	0			REV__nc|ENSG00000056736|Q9NRM6-2|IL17RB	REV__nc|ENSG00000056736|Q9NRM6-2|IL17RB	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.2973327636719	2	510.299527	1018.5845	-0.79252	-0.00040442	-2.3651	-0.0012069	-3.1576	-0.0016113	510.29822279583277	99.406	0.92838	97.081	96.639	97.568	-2.3253					40	17	3	0	0	0	0.22621	1	8856	8856		71.877	9.7701	1	220600	+		35670	26352	29383	29409	39110	39110					0.07595260122320724
LSSMSQPTLLI	11	Oxidation (M)	_LSSM(Oxidation (M))SQPTLLI_		LSSM(1)SQPTLLI		LSSM(54)SQPTLLI	0	0	1			REV__ENSG00000163029|ENST00000448223|SMC6	REV__ENSG00000163029|ENST00000448223|SMC6	MULTI-MSMS	OvCa99_classI_Rep5	1	402.5538330078125	3	402.553051	1204.63732	1.5794	0.0006358	-3.2782	-0.0013197	-1.6988	-0.00068385	402.55170181767727	57.67	0.9269	57.67	57.396	58.322	0					64	21	5	0	0	0	0.50203	1	4847	4847		53.597	7.1401	1	4990100	+		35671	20801	29384	29410	39111	39111		486			0.04319173394469544
LSSMSQPTLLI	11	Oxidation (M)	_LSSM(Oxidation (M))SQPTLLI_					0	0	1			REV__ENSG00000163029|ENST00000448223|SMC6	REV__ENSG00000163029|ENST00000448223|SMC6	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	402.553051	1204.63732	1.5794	0.0006358	-3.2782	-0.0013197	-1.6988	-0.00068385	402.55170181767727	57.67	0.9269	57.67	57.396	58.322	0	0	0	NaN	53.597	64	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4990100	+		35672	20801	29384	29410				486			0.04319173394469544
LSSPEVRFH	9	Unmodified	_LSSPEVRFH_					0	0	0		ENSG00000083520|ENST00000377767|DIS3;nc|ENSG00000083520|Q9Y2L1-2|DIS3	ENSG00000083520|ENST00000377767|DIS3	ENSG00000083520|ENST00000377767|DIS3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.8085327148438	2	536.282723	1070.55089	-1.4606	-0.00078327	4.3484	0.002332	2.8879	0.0015487	536.7862158946334	46.235	1.4467	43.162	42.876	44.322	-3.0724					44	27	3	0	0	0	0.027462	1	2398	2398		30.504	2.6214	1	56984			35673	1694	29385	29411	39112	39112					0.01843974674761739
LSSPEVRFH	9	Unmodified	_LSSPEVRFH_					0	0	0		ENSG00000083520|ENST00000377767|DIS3;nc|ENSG00000083520|Q9Y2L1-2|DIS3	ENSG00000083520|ENST00000377767|DIS3	ENSG00000083520|ENST00000377767|DIS3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	536.282723	1070.55089	-1.1292	-0.00060557	2.6333	0.0014122	1.5041	0.00080661	536.2836834525815	46.025	0.59778	43.315	43.048	43.646	-2.7097	0.076478	-0.0016517	NaN	23.042	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11685			35674	1694	29385	29411							0.01843974674761739
LSSPFRGLL	9	Unmodified	_LSSPFRGLL_					0	0	0		ENST00000460138.5_1_6:7882234-7882414:-|nuORF	ENST00000460138.5_1_6:7882234-7882414:-|nuORF	ENST00000460138.5_1_6:7882234-7882414:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	495.2982482910156	2	495.292559	988.570566	-0.61951	-0.00030684	-0.014931	-7.3952E-06	-0.63444	-0.00031423	495.2923469019322	88.285	1.4488	86.154	85.545	86.994	-2.1309					44	28	2	0	0	0	0.027164	1	5448	5448		90.777	11.326	1	363620			35675	12148	29386	29412	39113	39113					0.07582350685515848
LSSPFRGLL	9	Unmodified	_LSSPFRGLL_					0	0	0		ENST00000460138.5_1_6:7882234-7882414:-|nuORF	ENST00000460138.5_1_6:7882234-7882414:-|nuORF	ENST00000460138.5_1_6:7882234-7882414:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	495.292559	988.570566	1.6455	0.00081499	-2.1414	-0.0010606	-0.49589	-0.00024561	495.2913443410229	87.545	1.0339	86.114	85.642	86.676	-1.4311	-0.02268	-0.0014964	NaN	90.777	37	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234850			35676	12148	29386	29412							0.07582350685515848
LSSPLIEPN	9	Unmodified	_LSSPLIEPN_					0	0	0			REV__nc|ENSG00000132530|Q6GPH4-6|XAF1	REV__nc|ENSG00000132530|Q6GPH4-6|XAF1	MULTI-MSMS	OvCa9_classI_Rep2	2	485.2657470703125	2	485.266207	968.517862	0.5716	0.00027738	-0.71238	-0.00034569	-0.14078	-6.8317E-05	485.265720307919	71.372	2.094	68.865	68.281	70.375	-2.5071					105	39	4	0	0	0	0.31747	1	5754	5754		60.972	9.6365	1	647640	+		35677	28852	29387	29413	39114	39114					0.032343478320512986
LSSPLIEPN	9	Unmodified	_LSSPLIEPN_					0	0	0			REV__nc|ENSG00000132530|Q6GPH4-6|XAF1	REV__nc|ENSG00000132530|Q6GPH4-6|XAF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.2671813964844	2	485.266207	968.517862	-1.2201	-0.00059209	0.36292	0.00017611	-0.85722	-0.00041598	485.2663430336786	72.332	2.0813	68.936	68.569	70.65	-3.3961					119	42	3	0	0	0	0.48324	1	5601	5601		44.117	3.5442	1	2530900	+		35678	28852	29387	29413	39115	39115					0.032343478320512986
LSSPPCLALL	10	Unmodified	_LSSPPCLALL_					0	0	0		ENST00000492095.5_1_1:16785469-16785776:+|nuORF	ENST00000492095.5_1_1:16785469-16785776:+|nuORF	ENST00000492095.5_1_1:16785469-16785776:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	507.2865295410156	2	507.288628	1012.5627	2.3897	0.0012123	-3.9241	-0.0019907	-1.5344	-0.00077838	507.28477895798306	80.2	0.80017	80.2	79.944	80.744	0					56	18	4	0	0	0	0.37918	1	8237	8237		71.296	13.066	1	4515700			35679	12721	29388	29414	39116	39116					0.05692455373707617
LSSPQHPLPP	10	Unmodified	_LSSPQHPLPP_					0	0	0		ENST00000357436.4_1_22:38051691-38051868:+|nuORF	ENST00000357436.4_1_22:38051691-38051868:+|nuORF	ENST00000357436.4_1_22:38051691-38051868:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.8174438476562	2	536.792924	1071.57129	-0.98221	-0.00052725	-2.1447	-0.0011512	-3.1269	-0.0016785	536.7914713582969	66.991	0.39562	64.33	64.149	64.545	-2.661					10	7	2	0	0	0	0.026734	1	5218	5218		24.519	0	1	17464			35680	10716	29389	29415	39117	39117					0.03837145334568959
LSSPRKRN	8	Unmodified	_LSSPRKRN_					0	0	0			REV__FLG|p.P2790Dfs*19|1|0.02|ENSG00000143631|chr1:152306518-152306519|-/GTGTC|frameshift_variant	REV__FLG|p.P2790Dfs*19|1|0.02|ENSG00000143631|chr1:152306518-152306519|-/GTGTC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	479.7835388183594	2	479.283057	956.551562	2.0781	0.00099598	1.3297	0.0006373	3.4078	0.0016333	479.28624295528454	92.077	0.92985	92.077	91.372	92.301	0					40	21	3	0	0	0	0.62474	1	9934	9934		58.782	0	1	1077000	+	+	35681	16195	29390	29416	39118	39118					0.0715481411446035
LSSPSSRRP	9	Unmodified	_LSSPSSRRP_					0	0	0			REV__ENST00000468904.1_1_X:100184047-100184374:-|nuORF	REV__ENST00000468904.1_1_X:100184047-100184374:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	493.7723693847656	2	493.772522	985.530492	-0.79492	-0.00039251	0.7266	0.00035878	-0.068323	-3.3736E-05	493.772644625327	52.402	1.5823	49.589	48.897	50.48	-2.8129					94	31	6	0	0	0	0.16524	1	3498	3498		82.305	2.854	1	334430	+		35682	26236	29391	29417	39119	39119					0.03714804014953188
LSSQDVAKL	9	Unmodified	_LSSQDVAKL_					0	0	0		TCEANC|p.F210Gfs*24|1|0.05|ENSG00000176896|chrX:13663135-13663136|-/GGGGA|frameshift_variant;ENSG00000176896|ENST00000696128|TCEANC;nc|ENSG00000176896|Q8N8B7-2|TCEANC	TCEANC|p.F210Gfs*24|1|0.05|ENSG00000176896|chrX:13663135-13663136|-/GGGGA|frameshift_variant	TCEANC|p.F210Gfs*24|1|0.05|ENSG00000176896|chrX:13663135-13663136|-/GGGGA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	480.77130126953125	2	480.771657	959.528761	-0.74076	-0.00035614	-0.079923	-3.8425E-05	-0.82068	-0.00039456	480.7717098372101	34.934	0.88847	34.934	34.725	35.614	0					44	18	4	0	0	0	0.3076	1	1740	1740		62.107	1.8135	1	1782400			35683	7635	29392	29418	39120	39120					0.04737750206322744
LSSQLPGVV	9	Unmodified	_LSSQLPGVV_					0	0	0		ENST00000445470.6_1_7:129962525-129962837:+|nuORF	ENST00000445470.6_1_7:129962525-129962837:+|nuORF	ENST00000445470.6_1_7:129962525-129962837:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.929931640625	2	450.263468	898.512382	-0.14473	-6.5164E-05	0.41204	0.00018553	0.26731	0.00012036	450.2633900480373	65.737	0.5826	62.252	61.938	62.521	-3.4854					22	11	2	0	0	0	0.027453	1	4736	4736		45.972	20.398	1	188770			35684	11981	29393	29419	39121	39121					0.059066690402460154
LSSQLPGVV	9	Unmodified	_LSSQLPGVV_					0	0	0		ENST00000445470.6_1_7:129962525-129962837:+|nuORF	ENST00000445470.6_1_7:129962525-129962837:+|nuORF	ENST00000445470.6_1_7:129962525-129962837:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	450.263468	898.512382	2.7355	0.0012317	-2.3392	-0.0010533	0.3963	0.00017844	450.2620940489037	64.952	1.0959	62.227	61.545	62.641	-2.7245	-0.012256	-0.00058018	NaN	37.812	38	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40618			35685	11981	29393	29419							0.059066690402460154
LSSQLPLAV	9	Unmodified	_LSSQLPLAV_					0	0	0			REV__ENST00000329548.4_1_12:53646782-53646899:+|nuORF	REV__ENST00000329548.4_1_12:53646782-53646899:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	464.28009033203125	2	464.279118	926.543683	-0.49835	-0.00023137	-0.1943	-9.0207E-05	-0.69265	-0.00032158	464.2792310148003	81.133	1.5709	78.811	78.492	80.062	-2.3226					64	30	4	0	0	0	0.18193	1	4503	4503		79.451	2.6769	1	604580	+		35686	24520	29394	29420	39122	39122					0.07747242074333371
LSSQLPLAV	9	Unmodified	_LSSQLPLAV_					0	0	0			REV__ENST00000329548.4_1_12:53646782-53646899:+|nuORF	REV__ENST00000329548.4_1_12:53646782-53646899:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	464.279118	926.543683	0.27693	0.00012857	-1.7641	-0.00081906	-1.4872	-0.00069048	464.27874293645783	80.729	1.7574	79.034	78.271	80.029	-1.6951	0.033044	-0.0020834	NaN	79.451	71	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255450	+		35687	24520	29394	29420							0.07747242074333371
LSSQLVTL	8	Unmodified	_LSSQLVTL_					0	0	0		ENST00000414287.5_1_22:49808404-49808650:-|nuORF	ENST00000414287.5_1_22:49808404-49808650:-|nuORF	ENST00000414287.5_1_22:49808404-49808650:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	430.7587890625	2	430.758018	859.501483	-0.18881	-8.133E-05	-0.13604	-5.8602E-05	-0.32485	-0.00013993	430.75794506933937	71.75	3.1403	68.293	67.874	71.015	-3.4563					177	64	5	0	0	0	0.42208	1	5543	5543		85.359	0	1	4667500			35688	11577	29395	29421	39123	39123					0.06611266665970561
LSSQRLQAP	9	Unmodified	_LSSQRLQAP_					0	0	0			REV__ENSG00000164674|ENST00000611299|SYTL3	REV__ENSG00000164674|ENST00000611299|SYTL3	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.75274658203125	2	500.282723	998.550893	-0.81911	-0.00040978	3.3363	0.0016691	2.5172	0.0012593	500.2841391807191	97.588	1.0026	95.828	95.311	96.314	-1.7595					31	19	2	0	0	0	0.027433	1	6487	6487		51.335	3.6781	1	81332	+		35689	21011	29396	29422	39124	39124					0.05155974674744357
LSSRRGDL	8	Unmodified	_LSSRRGDL_					0	0	0			REV__ENST00000425648.1_1_14:53836202-53992628:+|nuORF	REV__ENST00000425648.1_1_14:53836202-53992628:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.2301940917969	2	452.253966	902.493378	-0.29305	-0.00013253	-4.3476	-0.0019662	-4.6406	-0.0020987	452.2518351339393	43.171	1.6992	40.164	39.539	41.238	-3.0074					42	32	2	0	0	0	0.028476	1	2047	2047		97.473	3.4663	1	59109	+		35690	25655	29397	29423	39125	39125					0.03823132469176471
LSSSHLAAI	9	Unmodified	_LSSSHLAAI_					0	0	0		ENST00000578237.5_1_17:15554991-15580556:-|nuORF	ENST00000578237.5_1_17:15554991-15580556:-|nuORF	ENST00000578237.5_1_17:15554991-15580556:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	449.75201416015625	2	449.753267	897.491981	-0.036515	-1.6423E-05	-0.71154	-0.00032002	-0.74805	-0.00033644	449.7529384751558	144.45	0.94861	143.02	142.73	143.68	-1.4357					31	17	2	0	0	0	0.65476	1	14171	14171		25.45	0.93098	1	64299			35691	13965	29398	29424	39126	39126					0.03913498380427427
LSSSHLAAI	9	Unmodified	_LSSSHLAAI_					0	0	0		ENST00000578237.5_1_17:15554991-15580556:-|nuORF	ENST00000578237.5_1_17:15554991-15580556:-|nuORF	ENST00000578237.5_1_17:15554991-15580556:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	449.753267	897.491981	0.86182	0.0003876	-1.5414	-0.00069327	-0.67963	-0.00030567	449.7525054745785	143.29	0.78992	143.06	142.8	143.59	-0.22696	0.021563	-0.00070418	NaN	25.45	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29052			35692	13965	29398	29424							0.03913498380427427
LSSSHLAAI	9	Unmodified	_LSSSHLAAI_					0	0	0		ENST00000578237.5_1_17:15554991-15580556:-|nuORF	ENST00000578237.5_1_17:15554991-15580556:-|nuORF	ENST00000578237.5_1_17:15554991-15580556:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	449.753267	897.491981	-2.794	-0.0012566	2.183	0.00098183	-0.611	-0.0002748	449.7543119971879	144.03	0.69238	143.04	142.73	143.43	-0.9903	0.00058312	0.002646	NaN	25.45	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26468			35693	13965	29398	29424							0.03913498380427427
LSSSLLWVTF	10	Unmodified	_LSSSLLWVTF_					0	0	0		ENST00000494911.5_1_11:32459635-32459764:+|nuORF	ENST00000494911.5_1_11:32459635-32459764:+|nuORF	ENST00000494911.5_1_11:32459635-32459764:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.293212890625	2	576.818607	1151.62266	1.2132	0.00069977	0.66854	0.00038563	1.8817	0.0010854	576.8184850605891	149.07	0.97545	149.07	148.82	149.79	0					26	19	2	0	0	0	0.026849	1	17443	17443		49.442	8.6634	1	155180			35694	12765	29399	29425	39127	39127					0.05291469308599517
LSSTKQPSN	9	Unmodified	_LSSTKQPSN_					0	0	0		ENST00000610253.5_1_11:108042863-108061204:-|nuORF;ENSG00000149308|ENST00000278612|NPAT	ENST00000610253.5_1_11:108042863-108061204:-|nuORF	ENST00000610253.5_1_11:108042863-108061204:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.249755859375	2	481.251089	960.487624	0.1701	8.1861E-05	-1.2583	-0.00060557	-1.0882	-0.00052371	481.25017980301214	123.07	0.74316	121.7	121.51	122.25	-1.3666					31	14	3	0	0	0	0.44568	1	11644	11644		47.657	8.8512	1	43280			35695	5454	29400	29426	39128	39128					0.005799891668516466
LSSTKQPSN	9	Unmodified	_LSSTKQPSN_					0	0	0		ENST00000610253.5_1_11:108042863-108061204:-|nuORF;ENSG00000149308|ENST00000278612|NPAT	ENST00000610253.5_1_11:108042863-108061204:-|nuORF	ENST00000610253.5_1_11:108042863-108061204:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	481.251089	960.487624	-0.70781	-0.00034063	-0.48371	-0.00023278	-1.1915	-0.00057342	481.25066623393735	122.08	0.79167	121.86	121.57	122.36	-0.21803	0.11912	0.00097682	NaN	47.657	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32929			35696	5454	29400	29426							0.005799891668516466
LSSTKQPSN	9	Unmodified	_LSSTKQPSN_					0	0	0		ENST00000610253.5_1_11:108042863-108061204:-|nuORF;ENSG00000149308|ENST00000278612|NPAT	ENST00000610253.5_1_11:108042863-108061204:-|nuORF	ENST00000610253.5_1_11:108042863-108061204:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	481.251089	960.487624	1.4965	0.00072021	-2.411	-0.0011603	-0.91442	-0.00044006	481.24968290439915	122.7	0.7875	121.67	121.43	122.21	-1.0286	-0.074788	-0.00087817	NaN	47.657	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53627			35697	5454	29400	29426							0.005799891668516466
LSSTLLFLF	9	Unmodified	_LSSTLLFLF_					0	0	0			REV__ENST00000507028.1_1_4:6382026-6473314:-|nuORF	REV__ENST00000507028.1_1_4:6382026-6473314:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.311279296875	2	520.804968	1039.59538	-0.98021	-0.0005105	-1.5934	-0.00082986	-2.5736	-0.0013404	520.803507160979	85.781	0.49957	83.561	83.335	83.835	-2.2204					13	9	2	0	0	0	0.027462	1	5035	5035		38.806	5.9937	1	326620	+		35698	26895	29401	29427	39129	39129					0.07716985768229279
LSSVAFPVIV	10	Unmodified	_LSSVAFPVIV_					0	0	0		ENST00000315970.11_1_12:58114914-58114971:+|nuORF	ENST00000315970.11_1_12:58114914-58114971:+|nuORF	ENST00000315970.11_1_12:58114914-58114971:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.8314208984375	2	516.310418	1030.60628	-1.4066	-0.00072625	-2.8228	-0.0014575	-4.2294	-0.0021837	516.3087229490292	95.351	0.90507	92.883	92.661	93.566	-2.4685					42	17	3	0	0	0	0.02649	1	8381	8381		60.972	13.315	1	225850			35699	10337	29402	29428	39130	39130					0.09220388142512093
LSSVAFPVIV	10	Unmodified	_LSSVAFPVIV_					0	0	0		ENST00000315970.11_1_12:58114914-58114971:+|nuORF	ENST00000315970.11_1_12:58114914-58114971:+|nuORF	ENST00000315970.11_1_12:58114914-58114971:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	516.310418	1030.60628	-0.17161	-8.8603E-05	-4.1023	-0.002118	-4.2739	-0.0022066	516.3080770252018	94.035	1.1608	92.936	92.592	93.752	-1.0995	0.02654	-0.00060725	NaN	58.782	53	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178940			35700	10337	29402	29428							0.09220388142512093
LSSVIYLVI	9	Unmodified	_LSSVIYLVI_					0	0	0			REV__tr|A0A553SJD3|A0A553SJD3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16585PE=4SV=1	REV__tr|A0A553SJD3|A0A553SJD3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16585PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.7759704589844	2	503.812793	1005.61103	-1.7367	-0.00087498	-2.3936	-0.0012059	-4.1304	-0.0020809	503.81166204461925	72.625	1.0195	69.229	68.813	69.833	-3.3961					33	20	2	0	0	0	0.027462	1	5643	5643		25.45	0	1	77495	+		35701	29997	29403	29429	39131	39131					0.10845272285257579
LSSVQESQV	9	Unmodified	_LSSVQESQV_					0	0	0		ENSG00000110245|ENST00000227667|APOC3	ENSG00000110245|ENST00000227667|APOC3	ENSG00000110245|ENST00000227667|APOC3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	488.77215576171875	2	488.750921	975.48729	0.04173	2.0396E-05	4.1649	0.0020356	4.2066	0.002056	488.7514711279599	56.301	0.35152	53.007	52.87	53.221	-3.2944					9	6	2	0	0	0	0.027137	1	3598	3598		113.41	12.159	1	8004.1			35702	2765	29404	29430	39132	39132					-0.0014343055298695617
LSSVRGKKV	9	Unmodified	_LSSVRGKKV_					0	0	0		tr|A0A553SMX9|A0A553SMX9_NIACITlpAfamilyproteindisulfidereductaseOS=NialliacirculansOX=1397GN=CEQ21_23400PE=4SV=1	tr|A0A553SMX9|A0A553SMX9_NIACITlpAfamilyproteindisulfidereductaseOS=NialliacirculansOX=1397GN=CEQ21_23400PE=4SV=1	tr|A0A553SMX9|A0A553SMX9_NIACITlpAfamilyproteindisulfidereductaseOS=NialliacirculansOX=1397GN=CEQ21_23400PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.2572326660156	2	487.311284	972.608014	-1.1195	-0.00054554	-0.25067	-0.00012215	-1.3702	-0.0006677	487.3110779732892	36.729	0.30996	36.729	36.575	36.885	0					11	6	2	0	0	0	0.027441	1	1967	1967		49.442	0	1	121540			35703	33881	29405	29431	39133	39133					0.12061441951141205
LSSVRPVKI	9	Unmodified	_LSSVRPVKI_					0	0	0			REV__ENSG00000188674|ENST00000341287|C2orf80	REV__ENSG00000188674|ENST00000341287|C2orf80	MULTI-MSMS	OvCa99_classI_Rep5	1	499.822998046875	2	499.821484	997.628415	-0.30861	-0.00015425	0.38453	0.0001922	0.07592	3.7946E-05	499.8215834843777	73.297	1.4869	73.297	72.954	74.441	0					87	37	4	0	0	0	0.2784	1	7198	7198		65.465	5.3471	1	7855800	+		35704	22728	29406	29432	39134	39134					0.1295061261095043
LSSVRTVKS	9	Unmodified	_LSSVRTVKS_					0	0	0		tr|A0A553SJJ2|A0A553SJJ2_NIACIHomoserinedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16790PE=3SV=1	tr|A0A553SJJ2|A0A553SJJ2_NIACIHomoserinedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16790PE=3SV=1	tr|A0A553SJJ2|A0A553SJJ2_NIACIHomoserinedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16790PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	488.77215576171875	2	488.792924	975.571294	0.16359	7.9963E-05	2.8131	0.001375	2.9767	0.001455	488.79418344337165	56.372	1.0638	53.077	52.87	53.934	-3.2944					50	20	3	0	0	0	0.027353	1	3598	3598		82.241	5.4664	1	241700			35705	33510	29407	29433	39135	39135					0.0825314533456094
LSSVRTVKS	9	Unmodified	_LSSVRTVKS_					0	0	0		tr|A0A553SJJ2|A0A553SJJ2_NIACIHomoserinedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16790PE=3SV=1	tr|A0A553SJJ2|A0A553SJJ2_NIACIHomoserinedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16790PE=3SV=1	tr|A0A553SJJ2|A0A553SJJ2_NIACIHomoserinedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16790PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	488.792924	975.571294	-0.57619	-0.00028164	3.6252	0.001772	3.049	0.0014903	488.79473715325685	55.862	0.69307	53.058	52.83	53.523	-2.804	-0.0098753	0.00041134	NaN	82.241	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75495			35706	33510	29407	29433							0.0825314533456094
LSSVSPWK	8	Unmodified	_LSSVSPWK_					0	0	0			REV__RGL2|p.S642Nfs*30|1|0.03|ENSG00000237441|chr6:33293100-33293101|-/TA|frameshift_variant	REV__RGL2|p.S642Nfs*30|1|0.03|ENSG00000237441|chr6:33293100-33293101|-/TA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	452.2303466796875	2	452.25036	902.486168	2.6765	0.0012105	0.9744	0.00044067	3.6509	0.0016511	452.2505074909802	43.177	1.0887	40.468	40.065	41.153	-2.7097					26	21	2	0	0	0	0.028476	1	2376	2376		40.573	1.7665	1	21695	+		35707	23420	29408	29434	39136	39136					0.031023998687601306
LSTASAASI	9	Unmodified	_LSTASAASI_					0	0	0			REV__nc|ENSG00000060237|Q9H4A3-5|WNK1	REV__nc|ENSG00000060237|Q9H4A3-5|WNK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	410.53271484375	2	410.724175	819.433798	0.16565	6.8036E-05	1.5962	0.00065559	1.7618	0.00072363	410.7246623578723	34.888	0.56716	34.888	34.679	35.246	0					25	11	3	0	0	0	0.027462	1	1733	1733		23.042	15.352	1	114980	+		35708	28719	29409	29435	39137	39137					0.016858167351415432
LSTCTSHML	9	Carbamidomethyl (C)	_LSTC(Carbamidomethyl (C))TSHML_	LSTC(1)TSHML		LSTC(56)TSHML		0	1	0		ENSG00000166884|ENST00000300127|OR4D6	ENSG00000166884|ENST00000300127|OR4D6	ENSG00000166884|ENST00000300127|OR4D6	MULTI-MSMS	OvCa99_classI_Rep5	1	525.2425537109375	2	525.241352	1048.46815	-1.3662	-0.00071757	0.42616	0.00022384	-0.94001	-0.00049373	525.2414850093403	65.772	0.39761	65.772	65.586	65.984	0					21	9	3	0	0	0	0.36502	1	6056	6056		55.504	11.387	1	1202200			35709	6727	29410	29436	39138	39138	66				-0.05414426439915587
LSTCWAELL	9	Unmodified	_LSTCWAELL_					0	0	0		ENST00000473637.6_1_17:80559543-80559714:+|nuORF	ENST00000473637.6_1_17:80559543-80559714:+|nuORF	ENST00000473637.6_1_17:80559543-80559714:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	518.2622680664062	2	518.26261	1034.51067	1.0127	0.00052487	-1.0401	-0.00053905	-0.027366	-1.4183E-05	518.2618451712167	129.49	1.6325	128.38	127.94	129.57	-1.1121					68	32	4	0	0	0	0.59983	1	10284	10284		31.955	0.42505	1	413920			35710	12415	29411	29437	39139	39139					-0.0052070804001687065
LSTEGLKVII	10	Unmodified	_LSTEGLKVII_					0	0	0			REV__tr|A0A7D6ZFV8|A0A7D6ZFV8_9CLOTPatatin-likephospholipasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16645PE=4SV=1	REV__tr|A0A7D6ZFV8|A0A7D6ZFV8_9CLOTPatatin-likephospholipasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16645PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.86181640625	2	536.834257	1071.65396	1.9899	0.0010683	4.3781	0.0023503	6.368	0.0034186	536.836746183135	96.76	0.25544	96.76	96.625	96.881	0					9	5	2	0	0	0	0.026734	1	10612	10612		39.253	0	1	112800	+		35711	31984	29412	29438	39140	39140					0.12100042342717643
LSTFSSKLS	9	Unmodified	_LSTFSSKLS_					0	0	0			REV__L1PA7_dup9238|chr10:48372221-48377370:+|1.4943041569802586|0.2795461482764699|2.42|429.0|168|1|anti-sense	REV__L1PA7_dup9238|chr10:48372221-48377370:+|1.4943041569802586|0.2795461482764699|2.42|429.0|168|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.2669677734375	2	485.266207	968.517862	-1.2201	-0.00059209	0.36292	0.00017611	-0.85722	-0.00041598	485.2663430336786	72.332	2.0813	68.936	68.569	70.65	-3.3961					119	42	3	0	0	0	0.2077	2	5563	5541;5563		75.043	9.5779	1	2530900	+		35712	28572	29413	29439	39141;39142	39142					0.032343478320512986
LSTGLRNI	8	Unmodified	_LSTGLRNI_					0	0	0		ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	ENST00000598969.5_1_19:19010490-19016602:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	437.7527770996094	2	437.261259	872.507966	1.3357	0.00058404	-1.095	-0.00047882	0.24062	0.00010522	437.2606467864422	45.822	0.40004	45.822	45.624	46.024	0					20	8	3	0	0	0	0.028476	1	3178	3178		12.959	0	1	486610			35713	14202	29414	29440	39143	39143					0.06661204617319072
LSTHKKSID	9	Unmodified	_LSTHKKSID_					0	0	0			REV__tr|A0A7D6ZEY9|A0A7D6ZEY9_9CLOTHEATrepeatdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15690PE=4SV=1	REV__tr|A0A7D6ZEY9|A0A7D6ZEY9_9CLOTHEATrepeatdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15690PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.296875	2	514.790381	1027.56621	-0.89731	-0.00046193	0.27065	0.00013933	-0.62665	-0.0003226	514.7905030138119	102.47	1.2332	101.79	101.49	102.72	-0.68459					54	24	3	0	0	0	0.027459	1	9515	9515		44.377	15.228	1	302600	+		35714	31954	29415	29441	39144	39144					0.05352841471949432
LSTKASRLPD	10	Unmodified	_LSTKASRLPD_					0	0	0			REV__ENSG00000185477|ENST00000609438|GPRIN3	REV__ENSG00000185477|ENST00000609438|GPRIN3	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7838134765625	2	544.308938	1086.60332	1.5876	0.00086416	2.3431	0.0012754	3.9308	0.0021395	544.3101645702258	78.831	0.24554	78.831	78.709	78.955	0					10	5	3	0	0	0	0.026931	1	8022	8022		23.523	0	1	307130	+		35715	22506	29416	29442	39145	39145					0.06348513017701407
LSTKCKKVQ	9	Unmodified	_LSTKCKKVQ_					0	0	0		nc|ENSG00000186638|Q5T7B8-4|KIF24;nc|ENSG00000186638|Q5T7B8-2|KIF24;ENSG00000186638|ENST00000402558|KIF24	nc|ENSG00000186638|Q5T7B8-4|KIF24	nc|ENSG00000186638|Q5T7B8-4|KIF24	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.323974609375	2	517.804977	1033.5954	-0.97599	-0.00050537	-2.6599	-0.0013773	-3.6359	-0.0018827	517.8034607626415	68.151	1.585	65.49	65.139	66.724	-2.661					68	31	3	0	0	0	0.027462	1	5495	5495		24.519	4.5224	1	205060			35716	8351	29417	29443	39146	39146					0.07994662496594174
LSTKGKKKIK	10	Unmodified	_LSTKGKKKIK_					0	0	0			REV__ENST00000566078.1_1_16:67644735-67645545:+|nuORF	REV__ENST00000566078.1_1_16:67644735-67645545:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	565.8877563476562	2	565.884616	1129.75468	2.4346	0.0013777	3.078	0.0017418	5.5127	0.0031195	566.3877737048826	122.2	1.2459	122.2	121.57	122.81	0					36	26	2	0	0	0	0.58067	1	14117	14117		44.377	13.874	1	164500	+		35717	27695	29418	29444	39147	39147					0.19499119116198926
LSTKITILSN	10	Unmodified	_LSTKITILSN_					0	0	0			REV__ENST00000492808.5_1_1:26644456-26645257:+|nuORF	REV__ENST00000492808.5_1_1:26644456-26645257:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.7879638671875	2	545.329339	1088.64412	-0.90237	-0.00049209	0.60461	0.00032971	-0.29776	-0.00016238	545.3292308547498	79.555	1.3508	76.804	76.514	77.865	-2.7514					37	27	2	0	0	0	0.026602	1	6472	6472		75.043	33.617	1	175550	+		35718	26696	29419	29445	39148	39148					0.10334854337361321
LSTKKVGPK	9	Unmodified	_LSTKKVGPK_					0	0	0			REV__tr|A0A7D6ZF55|A0A7D6ZF55_9CLOTSporulationproteinYqfDOS=ClostridiumintestinaleOX=36845GN=yqfDPE=4SV=1	REV__tr|A0A7D6ZF55|A0A7D6ZF55_9CLOTSporulationproteinYqfDOS=ClostridiumintestinaleOX=36845GN=yqfDPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.7940368652344	2	479.30821	956.601866	0.013924	6.6738E-06	-0.048853	-2.3416E-05	-0.03493	-1.6742E-05	479.30806598207164	105.04	0.65828	105.04	104.7	105.36	0					22	14	2	0	0	0	0.027462	1	11809	11809		23.042	7.4007	1	285060	+		35719	31957	29420	29446	39149	39149					0.12182923719615246
LSTKPDADI	9	Unmodified	_LSTKPDADI_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-MSMS	OvCa99_classI_Rep5	1	480.2568664550781	2	480.25584	958.497126	-0.023967	-1.151E-05	0.050783	2.4389E-05	0.026816	1.2878E-05	480.2556796391267	61.03	0.89648	61.03	60.646	61.542	0					62	20	4	0	0	0	0.24951	1	5341	5341		68.787	6.6794	1	3214800			35720	2918	29421	29447	39150	39150					0.016217574523693656
LSTKYRTE	8	Unmodified	_LSTKYRTE_					0	0	0		ENSG00000127947|ENST00000248594|PTPN12;PTPN12-RSBN1L|6|fusion;PTPN12-RSBN1L|3|fusion;ENST00000460731.5_1_7:77166863-77213036:+|nuORF;PTPN12-RSBN1L|7|fusion	ENSG00000127947|ENST00000248594|PTPN12	ENSG00000127947|ENST00000248594|PTPN12	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.3140869140625	2	499.269281	996.52401	-0.0062046	-3.0978E-06	4.0563	0.0020252	4.0501	0.0020221	499.2707645437815	112.75	0.74432	111.24	110.9	111.64	-1.5111					23	14	2	0	0	0	0.028476	1	10451	10451		33.516	5.6333	1	24682			35721	3852	29422	29448	39151	39151					0.02560866063561207
LSTLEAHLI	9	Unmodified	_LSTLEAHLI_					0	0	0			REV__tr|A0A7D6VU68|A0A7D6VU68_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11340PE=4SV=1	REV__tr|A0A7D6VU68|A0A7D6VU68_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11340PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.78973388671875	2	498.78985	995.565146	-0.32841	-0.00016381	-0.93942	-0.00046857	-1.2678	-0.00063238	498.78933667981374	116.43	2.9591	115.07	114.6	117.56	-1.3645					206	56	7	0	0	0	0.17908	1	10954	10954		79.939	10.312	1	3166500	+		35722	31656	29423	29449	39152	39152					0.06718627103043673
LSTLGIVFQG	10	Unmodified	_LSTLGIVFQG_					0	0	0		ENST00000465188.1_1_17:49231734-49233183:+|nuORF;ENST00000512768.1_1_17:49231734-49237541:+|nuORF;nc|ENSG00000239672|P15531-2|NME1	ENST00000465188.1_1_17:49231734-49233183:+|nuORF	ENST00000465188.1_1_17:49231734-49233183:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	518.2974853515625	2	517.797675	1033.5808	0.88779	0.00045969	-4.1933	-0.0021713	-3.3055	-0.0017116	518.2958569897511	109.73	1.2522	109.73	109.24	110.49	0					73	27	5	0	0	0	0.37436	1	12408	12408		71.877	3.3928	1	1557500			35723	12269	29424	29450	39153	39153					0.06534913620089355
LSTLHKAIKS	10	Unmodified	_LSTLHKAIKS_					0	0	0		tr|A0A7D7A5F1|A0A7D7A5F1_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05690PE=4SV=1	tr|A0A7D7A5F1|A0A7D7A5F1_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05690PE=4SV=1	tr|A0A7D7A5F1|A0A7D7A5F1_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05690PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.306396484375	2	549.337498	1096.66044	-0.096927	-5.3245E-05	-3.6023	-0.0019789	-3.6992	-0.0020321	549.3353450570165	31.618	0.84386	31.618	31.41	32.254	0					23	16	2	0	0	0	0.026782	1	1391	1391		23.523	3.5259	1	64790			35724	36168	29425	29451	39154	39154					0.1159798029407284
LSTLIIDLQ	9	Unmodified	_LSTLIIDLQ_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.32574462890625	2	508.305332	1014.59611	0.16333	8.302E-05	1.2691	0.00064509	1.4324	0.00072811	508.30566834904533	70.388	1.0626	67.668	67.354	68.417	-2.7196					36	20	3	0	0	0	0.027455	1	3225	3225		60.972	15.02	1	69554	+		35725	17630	29426	29452	39155	39155					0.08939780417290422
LSTLIIDLQ	9	Unmodified	_LSTLIIDLQ_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	508.305332	1014.59611	-0.24405	-0.00012405	1.4915	0.00075812	1.2474	0.00063407	508.30579708429656	70.128	0.89867	67.558	67.165	68.063	-2.5707	-0.13932	3.5251E-05	NaN	60.972	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52751	+		35726	17630	29426	29452							0.08939780417290422
LSTLIIDLQ	9	Unmodified	_LSTLIIDLQ_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	508.305332	1014.59611	-1.1227	-0.00057069	1.9055	0.00096856	0.78275	0.00039788	508.3060443341793	71.322	0.64207	67.866	67.58	68.222	-3.4563	0.16853	0.00045613	NaN	60.972	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74417	+		35727	17630	29426	29452							0.08939780417290422
LSTLLVESPP	10	Unmodified	_LSTLLVESPP_					0	0	0			REV__ENST00000476634.1_1_12:8085578-8088630:-|nuORF	REV__ENST00000476634.1_1_12:8085578-8088630:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	528.3037109375	2	528.30279	1054.59103	0.68567	0.00036224	-0.60911	-0.00032179	0.07656	4.0447E-05	528.3026828167966	158.35	0.549	158.35	157.96	158.51	0					16	11	2	0	0	0	0.65434	1	18568	18568		35.618	1.4457	1	84763	+		35728	16735	29427	29453	39156	39156					0.06591476554672226
LSTLNFGELI	10	Unmodified	_LSTLNFGELI_					0	0	0			REV__ENSG00000131067|ENST00000336431|GGT7	REV__ENSG00000131067|ENST00000336431|GGT7	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.7770385742188	2	553.808239	1105.60193	1.222	0.00067675	-4.3729	-0.0024217	-3.1509	-0.001745	554.3076983222608	109.51	0.48711	109.51	109.24	109.73	0					15	10	2	0	0	0	0.026296	1	12432	12432		120.87	18.095	1	88597	+		35729	18996	29428	29454	39157	39157					0.05334878928965736
LSTLQASGPGG	11	Unmodified	_LSTLQASGPGG_					0	0	0			REV__ENST00000427797.5_1_7:56099714-56101860:-|nuORF	REV__ENST00000427797.5_1_7:56099714-56101860:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	494.2598876953125	2	494.258914	986.503274	1.9858	0.00098149	1.0364	0.00051226	3.0222	0.0014937	494.25931515072796	136.99	0.769	136.99	136.73	137.5	0					37	15	3	0	0	0	0.41398	1	15974	15974		60.118	1.872	1	453750	+		35730	25603	29429	29455	39158	39158					0.009482756839133799
LSTLRDLFE	9	Unmodified	_LSTLRDLFE_					0	0	0			REV__ENST00000554157.5_1_14:20763469-20774096:-|nuORF	REV__ENST00000554157.5_1_14:20763469-20774096:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	547.2992553710938	2	547.298039	1092.58152	-0.62539	-0.00034228	1.5809	0.00086521	0.95548	0.00052293	547.2990032117261	114.63	1.4806	113.58	113.25	114.74	-1.055					54	29	2	0	0	0	0.28934	1	8486	8486		64.207	3.2353	1	184650	+		35731	19378	29430	29456	39159	39159					0.038937082691290925
LSTLTGTQVL	10	Unmodified	_LSTLTGTQVL_					0	0	0		SRF|p.S237Vfs*11|1|0.08|ENSG00000112658|chr6:43174041-43174042|-/GTCCCCTTCCTGGGCTCATGGCAGGATGTTT|frameshift_variant;ENSG00000112658|ENST00000265354|SRF	SRF|p.S237Vfs*11|1|0.08|ENSG00000112658|chr6:43174041-43174042|-/GTCCCCTTCCTGGGCTCATGGCAGGATGTTT|frameshift_variant	SRF|p.S237Vfs*11|1|0.08|ENSG00000112658|chr6:43174041-43174042|-/GTCCCCTTCCTGGGCTCATGGCAGGATGTTT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	516.8009033203125	2	516.800414	1031.58628	-0.53286	-0.00027538	-0.056953	-2.9433E-05	-0.58982	-0.00030482	516.8002583298056	44.79	0.96794	44.79	44.528	45.496	0					45	21	3	0	0	0	0.13504	1	3047	3047		104.75	3.4939	1	3357700			35732	2916	29431	29457	39160	39160					0.07174592411888625
LSTNCYLKGC	10	Unmodified	_LSTNCYLKGC_					0	0	0			REV__ENST00000480402.1_1_10:32634311-32634422:-|nuORF	REV__ENST00000480402.1_1_10:32634311-32634422:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.25927734375	2	551.257002	1100.49945	-0.95485	-0.00052637	1.3585	0.00074887	0.40363	0.0002225	551.2577336408604	53.617	1.3302	50.385	50.073	51.403	-3.232					52	25	4	0	0	0	0.55359	1	3280	3280		47.657	5.2612	1	332710	+		35733	26461	29432	29458	39161	39161					-0.04677853405814858
LSTNCYLKGC	10	Unmodified	_LSTNCYLKGC_					0	0	0			REV__ENST00000480402.1_1_10:32634311-32634422:-|nuORF	REV__ENST00000480402.1_1_10:32634311-32634422:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	551.257002	1100.49945	-0.54893	-0.0003026	0.6166	0.0003399	0.067673	3.7305E-05	551.2573656017315	53.595	0.84619	50.781	50.479	51.325	-2.8139	0.19778	-0.00068838	NaN	47.657	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61554	+		35734	26461	29432	29458							-0.04677853405814858
LSTNCYLKGC	10	Unmodified	_LSTNCYLKGC_					0	0	0			REV__ENST00000480402.1_1_10:32634311-32634422:-|nuORF	REV__ENST00000480402.1_1_10:32634311-32634422:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	551.257002	1100.49945	-0.95485	-0.00052637	1.3585	0.00074887	0.40363	0.0002225	551.2577336408604	53.617	1.3302	50.385	50.073	51.403	-3.232	-0.19778	0.00012955	NaN	47.657	52	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	332710	+		35735	26461	29432	29458							-0.04677853405814858
LSTPGNLLL	9	Unmodified	_LSTPGNLLL_					0	0	0		ENST00000541064.5_1_14:74946670-74946742:-|nuORF	ENST00000541064.5_1_14:74946670-74946742:-|nuORF	ENST00000541064.5_1_14:74946670-74946742:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	465.2749938964844	2	464.279118	926.543683	-0.83032	-0.0003855	0.75887	0.00035233	-0.071452	-3.3174E-05	464.279347462524	76.212	0.83054	73.841	73.57	74.4	-2.3715					26	15	2	0	0	0	0.027462	1	3885	3885		32.812	3.6629	1	49700			35736	13460	29433	29459	39162	39162					0.07747242074333371
LSTPVPPT	8	Unmodified	_LSTPVPPT_					0	0	0		ENSG00000198934|ENST00000361470|MAGEE1	ENSG00000198934|ENST00000361470|MAGEE1	ENSG00000198934|ENST00000361470|MAGEE1	MULTI-MSMS	OvCa9_classI_Rep4_	4	406.2338562011719	2	406.231636	810.448719	1.3683	0.00055586	-1.2503	-0.00050792	0.11802	4.7945E-05	406.2309313067954	57.66	2.0728	54.315	53.679	55.752	-3.3449					85	40	5	0	0	0	0.7224	1	3771	3771		38.806	3.6054	1	335870			35737	8911	29434	29460	39163	39163					0.03591308603131438
LSTQLVPNLPL	11	Unmodified	_LSTQLVPNLPL_					0	0	0			REV__FAM180A|p.R160Mfs*6|1|0.05|ENSG00000189320|chr7:135734018-135734019|-/CAACA|frameshift_variant	REV__FAM180A|p.R160Mfs*6|1|0.05|ENSG00000189320|chr7:135734018-135734019|-/CAACA|frameshift_variant	MSMS	OvCa9_classI_Rep4_	4	597.8551025390625	2	597.858264	1193.70197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	151.33	1	149.9	149.4	150.4	-1.4344								0	0	0	0.19474	1	14956	14956		22.58	2.5829	1		+		35738	22771	29435	29461	39164	39164					0.11287116262769814
LSTRRNRA	8	Unmodified	_LSTRRNRA_					0	0	0			REV__ENSG00000237524|ENST00000568484|TEX51	REV__ENSG00000237524|ENST00000568484|TEX51	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.293212890625	2	487.286131	972.55771	1.538	0.00074947	-2.488	-0.0012124	-0.94996	-0.0004629	487.2862201044738	135.47	0.28285	135.47	135.31	135.6	0					6	5	2	0	0	0	0.028476	1	15788	15788		24.203	5.8783	1	41611	+		35739	23422	29436	29462	39165	39165					0.0703333234598631
LSTSKLNSL	9	Unmodified	_LSTSKLNSL_					0	0	0		nc|ENSG00000059573|P54886-2|ALDH18A1;ENSG00000059573|ENST00000371224|ALDH18A1	nc|ENSG00000059573|P54886-2|ALDH18A1	nc|ENSG00000059573|P54886-2|ALDH18A1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	482.26318359375	2	481.779482	961.544411	-0.01626	-7.8338E-06	-1.1729	-0.00056507	-1.1892	-0.00057291	481.7791432525737	57.203	0.96811	53.858	53.577	54.546	-3.3449					30	18	2	0	0	0	0.027461	1	3727	3727		40.778	5.1599	1	44205			35740	1253	29437	29463	39166	39166					0.06210036723382473
LSTSPISLDF	10	Unmodified	_LSTSPISLDF_					0	0	0		ENST00000456098.5_1_12:102874196-102874250:-|nuORF	ENST00000456098.5_1_12:102874196-102874250:-|nuORF	ENST00000456098.5_1_12:102874196-102874250:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	540.284423828125	2	540.284597	1078.55464	0.71701	0.00038739	-1.2064	-0.00065182	-0.48943	-0.00026443	540.2838474213934	90.927	1.6026	89.692	89.143	90.746	-1.2355					68	30	3	0	0	0	0.5675	1	8071	8071		45.972	3.108	1	527920			35741	12105	29438	29464	39167	39167					0.018505996579506245
LSTSPISLDF	10	Unmodified	_LSTSPISLDF_					0	0	0		ENST00000456098.5_1_12:102874196-102874250:-|nuORF	ENST00000456098.5_1_12:102874196-102874250:-|nuORF	ENST00000456098.5_1_12:102874196-102874250:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	540.2855224609375	2	540.284597	1078.55464	-0.32528	-0.00017574	-0.3772	-0.00020379	-0.70247	-0.00037954	540.284316762095	91.583	1.0289	89.559	89.332	90.361	-2.0241					50	20	3	0	0	0	0.42962	1	5765	5765		64.207	5.4253	1	1170800			35742	12105	29438	29464	39168	39168					0.018505996579506245
LSTSRPLVF	9	Unmodified	_LSTSRPLVF_					0	0	0		nc|ENSG00000204634|O95759-2|TBC1D8;nc|ENSG00000204634|O95759|TBC1D8;ENSG00000204634|ENST00000409318|TBC1D8;ENST00000494011.1_1_2:101627772-101638797:-|nuORF	nc|ENSG00000204634|O95759-2|TBC1D8	nc|ENSG00000204634|O95759-2|TBC1D8	MULTI-SECPEP	OvCa9_classI_Rep3	3	510.73382568359375	2	510.297842	1018.58113	1.2191	0.0006221	-1.388	-0.00070831	-0.16895	-8.6213E-05	510.2971227187043	122.23	0.68176	121.2	120.95	121.64	-1.0286					19	12	2	0	0	0	0.027462	1	9361	9361		18.324	1.8513	1	18737			35743	9015	29439	29465	39169	39169					0.07258333339962064
LSTTVVLQL	9	Unmodified	_LSTTVVLQL_					0	0	0		Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|3|1|sense	Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|3|1|sense	Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|3|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.2829895019531	2	487.30005	972.585547	-1.086	-0.00052919	-2.6357	-0.0012844	-3.7216	-0.0018135	487.29756848569446	95.705	0.65442	93.279	93.005	93.659	-2.4256					15	12	2	0	0	0	0.027176	1	8457	8457		111.65	12.273	1	25357			35744	14361	29440	29466	39170	39170					0.09815797762848888
LSTVKYEPP	9	Unmodified	_LSTVKYEPP_					0	0	0		ENST00000466324.1_1_11:64444212-64481216:-|nuORF;nc|ENSG00000110076|Q9P2S2-2|NRXN2;ENSG00000110076|ENST00000265459|NRXN2	ENST00000466324.1_1_11:64444212-64481216:-|nuORF	ENST00000466324.1_1_11:64444212-64481216:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.3176879882812	2	517.281857	1032.54916	2.8155	0.0014564	2.0239	0.0010469	4.8394	0.0025033	517.2827474853565	102.42	0.5948	102.42	102.21	102.81	0					16	13	2	0	0	0	0.027441	1	11422	11422		29.15	0	1	544000			35745	2755	29441	29467	39171	39171					0.034189208661246084
LSTVTYFL	8	Unmodified	_LSTVTYFL_					0	0	0		ENST00000380752.9_1_13:30085169-30085490:-|nuORF	ENST00000380752.9_1_13:30085169-30085490:-|nuORF	ENST00000380752.9_1_13:30085169-30085490:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.2768859863281	2	472.260394	942.506234	2.0602	0.00097296	3.6837	0.0017397	5.744	0.0027127	472.26211005884664	86.529	0.44139	83.902	83.613	84.054	-2.6269					12	8	2	0	0	0	0.028476	1	7292	7292		105.27	25.818	1	18707			35746	11150	29442	29468	39172	39172					0.03268150808708015
LSTWCTACDP	10	Unmodified	_LSTWCTACDP_					0	0	0		chr19:35249131-35250377|224|87.02|0.94|6.54|+|2|LSR,None|1	chr19:35249131-35250377|224|87.02|0.94|6.54|+|2|LSR,None|1	chr19:35249131-35250377|224|87.02|0.94|6.54|+|2|LSR,None|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	549.3055419921875	2	548.725535	1095.43652	-1.061	-0.00058219	-0.13826	-7.5866E-05	-1.1992	-0.00065806	548.7252708158999	118.07	1.243	117.92	117.39	118.63	-0.14755					50	24	3	0	0	0	0.026994	1	11299	11299		40.778	17.736	1	53360			35747	413	29443	29469	39173	39173					-0.10738419193876325
LSTWRRSR	8	Unmodified	_LSTWRRSR_					0	0	0		ENST00000464606.5_1_7:138758765-138761104:-|nuORF	ENST00000464606.5_1_7:138758765-138761104:-|nuORF	ENST00000464606.5_1_7:138758765-138761104:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.30517578125	2	531.301781	1060.58901	-1.2211	-0.00064879	2.6461	0.0014059	1.425	0.00075711	531.3031508378326	96.099	1.7634	93.674	93.254	95.018	-2.4256					71	34	4	0	0	0	0.64371	1	8476	8476		54.776	1.6874	1	460960			35748	12258	29444	29470	39174	39174					0.06113905380084361
LSVAGNKLAL	10	Unmodified	_LSVAGNKLAL_					0	0	0			REV__NRXN1|p.T759Kfs*14|1|0.21|ENSG00000179915|chr2:50531298-50531299|-/AACAGCTCTTGATCTAGATAACAAAGCAGAAATT|frameshift_variant	REV__NRXN1|p.T759Kfs*14|1|0.21|ENSG00000179915|chr2:50531298-50531299|-/AACAGCTCTTGATCTAGATAACAAAGCAGAAATT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.786376953125	2	493.305667	984.596781	1.099	0.00054213	-0.81649	-0.00040278	0.28249	0.00013935	493.3051415932841	122.48	0.47242	121.46	121.16	121.64	-1.0286					11	8	2	0	0	0	0.026849	1	9434	9434		32.812	7.2384	1	8422.5	+		35749	22146	29445	29471	39175	39175					0.10386619856978996
LSVAPRRWIP	10	Unmodified	_LSVAPRRWIP_					0	0	0			REV__ENST00000508276.1_1_4:2933511-2933652:-|nuORF	REV__ENST00000508276.1_1_4:2933511-2933652:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	597.85595703125	2	597.858932	1193.70331	-2.7036	-0.0016164	-1.6559	-0.00099001	-4.3595	-0.0026064	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.72319	1	12464	12464		27.882	2.3082	1	591030	+		35750	26911	29446	29472	39176	39176					0.11420795142180395
LSVCRPNYT	9	Unmodified	_LSVCRPNYT_					0	0	0		ENST00000588360.1_1_19:11471945-11474676:+|nuORF;nc|ENSG00000105520|Q96GM1|PLPPR2;nc|ENSG00000105520|Q96GM1-2|PLPPR2;ENSG00000105520|ENST00000688289|PLPPR2	ENST00000588360.1_1_19:11471945-11474676:+|nuORF	ENST00000588360.1_1_19:11471945-11474676:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	526.7620239257812	2	526.763309	1051.51206	0.69507	0.00036614	-1.1514	-0.0006065	-0.45629	-0.00024036	526.7626305368649	121.64	1.7818	120.61	120.22	122	-1.0286					87	33	4	0	0	0	0.49652	1	9341	9341		42.864	2.2917	1	598650			35751	2468	29447	29473	39177	39177					-0.011630739512838772
LSVCTKSSL	9	Unmodified	_LSVCTKSSL_					0	0	0			REV__ENST00000468307.1_1_7:155094424-155094604:+|nuORF	REV__ENST00000468307.1_1_7:155094424-155094604:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	469.2532043457031	2	469.254785	936.495018	-0.81664	-0.00038321	-3.37	-0.0015814	-4.1866	-0.0019646	469.25318248509967	85.958	1.5353	84.467	84.146	85.682	-1.4907					88	29	4	0	0	0	0.083631	1	7437	7437		101.6	3.0187	1	1202700	+		35752	26220	29448	29474	39178	39178					0.024230054429153824
LSVCTKSSL	9	Unmodified	_LSVCTKSSL_					0	0	0			REV__ENST00000468307.1_1_7:155094424-155094604:+|nuORF	REV__ENST00000468307.1_1_7:155094424-155094604:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	469.2540283203125	2	469.254785	936.495018	-0.79526	-0.00037318	-2.934	-0.0013768	-3.7292	-0.00175	469.25341955315633	86.432	2.2386	84.255	84.03	86.269	-2.1768					105	43	4	0	0	0	0.083631	1	5152	5152		101.6	0.34809	1	2599900	+		35753	26220	29448	29474	39179	39179					0.024230054429153824
LSVDCYLN	8	Unmodified	_LSVDCYLN_					0	0	0		ENSG00000196208|ENST00000381486|GREB1;nc|ENSG00000196208|Q4ZG55-4|GREB1	ENSG00000196208|ENST00000381486|GREB1	ENSG00000196208|ENST00000381486|GREB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.71234130859375	2	463.718036	925.421518	-6.4286	-0.002981	-3.4868	-0.0016169	-9.9154	-0.0045979	463.71628519476496	159.33	0.70088	157.74	157.47	158.17	-1.5858					37	15	4	0	0	0	0.68714	1	15734	15734		45.952	0	1	51969			35754	8577	29449	29475	39180	39180					-0.044175429995675586
LSVEWVPK	8	Unmodified	_LSVEWVPK_					0	0	0		tr|A0A7D6ZHP8|A0A7D6ZHP8_9CLOTDipeptidylpeptidaseIVN-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03790PE=4SV=1	tr|A0A7D6ZHP8|A0A7D6ZHP8_9CLOTDipeptidylpeptidaseIVN-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03790PE=4SV=1	tr|A0A7D6ZHP8|A0A7D6ZHP8_9CLOTDipeptidylpeptidaseIVN-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03790PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2557373046875	2	479.273835	956.533118	0.0019312	9.2556E-07	-4.3364	-0.0020783	-4.3345	-0.0020774	479.27165722280466	61.02	0.72634	61.02	60.816	61.542	0					25	16	2	0	0	0	0.028476	1	5395	5395		53.351	24.202	1	1440300			35755	35585	29450	29476	39181	39181					0.05311259419897851
LSVFGALLFL	10	Unmodified	_LSVFGALLFL_					0	0	0			REV__ENSG00000163251|ENST00000295417|FZD5	REV__ENSG00000163251|ENST00000295417|FZD5	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3291625976562	2	540.328611	1078.64267	-1.2676	-0.00068491	4.0333	0.0021793	2.7657	0.0014944	540.3307152267141	139.22	4.0818	138.16	137	141.08	-1.0595					200	82	3	0	0	0	0.69986	1	11564	11564		30.504	1.3541	1	55828	+		35756	20821	29451	29477	39182	39182					0.1064926503922834
LSVGFQQNPL	10	Unmodified	_LSVGFQQNPL_					0	0	0			REV__ENSG00000175220|ENST00000311956|ARHGAP1	REV__ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.3511352539062	2	551.798206	1101.58186	0.25849	0.00014263	-0.89509	-0.00049391	-0.63661	-0.00035128	551.7979283258665	90.236	1.324	87.661	87.248	88.572	-2.575					71	25	4	0	0	0	0.026665	1	7864	7864		34.173	9.6534	1	442220	+		35757	21882	29452	29478	39183	39183					0.035131279889810685
LSVGGWEIT	9	Unmodified	_LSVGGWEIT_					0	0	0		nc|ENSG00000205356|Q7Z6L1-3|TECPR1;ENSG00000205356|ENST00000447648|TECPR1;nc|ENSG00000205356|Q7Z6L1-2|TECPR1;nc|ENSG00000205356|Q7Z6L1-4|TECPR1	nc|ENSG00000205356|Q7Z6L1-3|TECPR1	nc|ENSG00000205356|Q7Z6L1-3|TECPR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2933654785156	2	481.2531	960.491647	2.3237	0.0011183	3.6215	0.0017429	5.9452	0.0028611	481.2547675875285	86.951	0.45448	86.951	86.761	87.216	0					17	10	2	0	0	0	0.027456	1	9203	9203		30.504	8.5438	1	493360			35758	9069	29453	29479	39184	39184					0.009820786605473586
LSVGRPRKVEV	11	Unmodified	_LSVGRPRKVEV_					0	0	0			REV__nc|ENSG00000130175|P14314-2|PRKCSH	REV__nc|ENSG00000130175|P14314-2|PRKCSH	MULTI-MSMS	OvCa9_classI_Rep2	2	413.9224853515625	3	413.922578	1238.7459	0.26902	0.00011136	-0.32433	-0.00013425	-0.05531	-2.2894E-05	413.9224547119415	58.292	1.633	55.5	55.122	56.755	-2.792					103	31	5	0	0	0	0.65267	1	4206	4206		39.873	2.365	1	599060	+		35759	18925	29454	29480	39185	39185					0.13608145479724953
LSVGRYLAL	9	Unmodified	_LSVGRYLAL_					0	0	0			REV__nc|ENSG00000077713|Q8WUT9-2|SLC25A43	REV__nc|ENSG00000077713|Q8WUT9-2|SLC25A43	MULTI-MSMS	OvCa9_classI_Rep2	2	496.2999267578125	2	496.300384	990.586216	-0.35919	-0.00017827	0.21743	0.00010791	-0.14176	-7.0356E-05	496.30031555631194	121.97	1.1373	121.75	121.47	122.61	-0.21803					58	22	4	0	0	0	0.5811	1	11807	11807		34.173	6.2903	1	202890	+		35760	17014	29455	29481	39186	39186					0.09054637202530103
LSVHIKNLL	9	Unmodified	_LSVHIKNLL_					0	0	0		nc|ENSG00000188992|Q6XZB0-4|LIPI;nc|ENSG00000188992|Q6XZB0-5|LIPI;ENSG00000188992|ENST00000681601|LIPI;nc|ENSG00000188992|Q6XZB0-2|LIPI;nc|ENSG00000188992|Q6XZB0-7|LIPI;nc|ENSG00000188992|Q6XZB0-6|LIPI;nc|ENSG00000188992|Q6XZB0-3|LIPI	nc|ENSG00000188992|Q6XZB0-4|LIPI	nc|ENSG00000188992|Q6XZB0-4|LIPI	MULTI-MSMS	OvCa9_classI_Rep3	3	518.82861328125	2	518.829309	1035.64407	1.7024	0.00088324	-2.0698	-0.0010739	-0.36745	-0.00019064	518.8281964515016	122.5	2.5536	121.47	120.64	123.19	-1.0286					133	48	4	0	0	0	0.24951	1	9475	9475		68.787	0	1	994930			35761	8523	29456	29482	39187	39187					0.12766899127996112
LSVHRKQV	8	Unmodified	_LSVHRKQV_					0	0	0			REV__ENST00000382990.1_1_16:281340-281454:+|nuORF	REV__ENST00000382990.1_1_16:281340-281454:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.2705078125	2	483.795801	965.577048	-0.70465	-0.00034091	1.1734	0.00056769	0.46876	0.00022678	483.7959622308121	52.997	0.9026	49.789	49.4	50.303	-3.208					25	17	2	0	0	0	0.028476	1	3185	3185		30.504	8.5438	1	21618	+		35762	25217	29457	29483	39188	39188					0.09288288636889774
LSVHRKQV	8	Unmodified	_LSVHRKQV_					0	0	0			REV__ENST00000382990.1_1_16:281340-281454:+|nuORF	REV__ENST00000382990.1_1_16:281340-281454:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	483.795801	965.577048	-1.2975	-0.00062773	0.68291	0.00033039	-0.6146	-0.00029734	483.79615301908564	52.512	0.49344	49.699	49.394	49.888	-2.8129	-0.045176	-0.00020777	NaN	35.618	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12542	+		35763	25217	29457	29483							0.09288288636889774
LSVICYLF	8	Carbamidomethyl (C)	_LSVIC(Carbamidomethyl (C))YLF_	LSVIC(1)YLF		LSVIC(55)YLF		0	1	0			REV__ENST00000394053.6_1_2:74442093-74442186:+|nuORF	REV__ENST00000394053.6_1_2:74442093-74442186:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3033142089844	2	507.770071	1013.52559	-0.20061	-0.00010187	-3.2313	-0.0016408	-3.4319	-0.0017426	507.7679557839399	98.379	1.427	96	95.418	96.845	-2.3786					58	27	3	0	0	0	0.028476	1	8726	8726		54.765	14.192	1	145690	+		35764	25290	29458	29484	39189	39189	311				0.019367838279663374
LSVIFIFRIM	10	Unmodified	_LSVIFIFRIM_					0	0	0		ENSG00000169562|ENST00000361726|GJB1	ENSG00000169562|ENST00000361726|GJB1	ENSG00000169562|ENST00000361726|GJB1	MULTI-MSMS	OvCa9_classI_Rep2	2	619.868896484375	2	619.87012	1237.72569	-3.8587	-0.0023919	2.7872	0.0017277	-1.0715	-0.00066418	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.69073	1	15312	15312		31.53	4.8369	1	492670			35765	7017	29459	29485	39190	39190					0.11633258495567134
LSVKGLLVGE	10	Unmodified	_LSVKGLLVGE_					0	0	0		C5|p.A1171Vfs*12|1|0.06|ENSG00000106804|chr9:120980231-120980232|-/GCACTCCAGCCTGGGTGACAGAGCGAGAACC|frameshift_variant;C5|p.L1618Nfs*4|1|0.36|ENSG00000106804|chr9:120953778-120953779|AA/-|frameshift_variant;ENSG00000106804|ENST00000223642|C5	C5|p.A1171Vfs*12|1|0.06|ENSG00000106804|chr9:120980231-120980232|-/GCACTCCAGCCTGGGTGACAGAGCGAGAACC|frameshift_variant	C5|p.A1171Vfs*12|1|0.06|ENSG00000106804|chr9:120980231-120980232|-/GCACTCCAGCCTGGGTGACAGAGCGAGAACC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	507.8149719238281	2	507.813325	1013.6121	1.0485	0.00053242	0.53509	0.00027172	1.5836	0.00080415	507.8135294543622	154.5	1.202	154.5	154.12	155.33	0					63	23	4	0	0	0	0.47142	1	18136	18136		58.23	8.7884	1	1105600			35766	167	29460	29486	39191	39191					0.1058348665419544
LSVKIYGK	8	Unmodified	_LSVKIYGK_					0	0	0			REV__tr|A0A7D6VQQ3|A0A7D6VQQ3_9CLOTPutativegluconeogenesisfactorOS=ClostridiumintestinaleOX=36845GN=HZF06_02630PE=3SV=1	REV__tr|A0A7D6VQQ3|A0A7D6VQQ3_9CLOTPutativegluconeogenesisfactorOS=ClostridiumintestinaleOX=36845GN=HZF06_02630PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	453.7754211425781	2	454.284203	906.553853	0.54484	0.00024751	-0.83279	-0.00037832	-0.28795	-0.00013081	454.2835496028506	57.289	1.0693	53.944	53.679	54.748	-3.3449					42	20	3	0	0	0	0.028476	1	3693	3693		53.351	5.4358	1	125210	+		35767	31346	29461	29487	39192	39192					0.09683849799569089
LSVKIYGK	8	Unmodified	_LSVKIYGK_					0	0	0			REV__tr|A0A7D6VQQ3|A0A7D6VQQ3_9CLOTPutativegluconeogenesisfactorOS=ClostridiumintestinaleOX=36845GN=HZF06_02630PE=3SV=1	REV__tr|A0A7D6VQQ3|A0A7D6VQQ3_9CLOTPutativegluconeogenesisfactorOS=ClostridiumintestinaleOX=36845GN=HZF06_02630PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	454.284203	906.553853	0.81739	0.00037133	-1.5397	-0.00069948	-0.72236	-0.00032816	454.2832407446179	56.712	0.94237	53.908	53.572	54.515	-2.804	-0.01796	-0.0004508	NaN	53.351	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40877	+		35768	31346	29461	29487							0.09683849799569089
LSVKNASCVP	10	Unmodified	_LSVKNASCVP_					0	0	0		nc|ENSG00000158485|P29016-2|CD1B;ENSG00000158485|ENST00000368168|CD1B	nc|ENSG00000158485|P29016-2|CD1B	nc|ENSG00000158485|P29016-2|CD1B	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.30242919921875	2	509.273509	1016.53247	-0.58768	-0.00029929	-3.6022	-0.0018345	-4.1899	-0.0021338	509.2713032970947	88.77	0.3858	86.639	86.364	86.75	-2.1309					10	7	2	0	0	0	0.026656	1	5425	5425		85.161	48.002	1	10851			35769	5955	29462	29488	39193	39193					0.024860967085373886
LSVKQATLN	9	Unmodified	_LSVKQATLN_					0	0	0		ENSG00000110077|ENST00000528851|MS4A6A;nc|ENSG00000110077|Q9H2W1|MS4A6A;nc|ENSG00000110077|Q9H2W1-5|MS4A6A;nc|ENSG00000110077|Q9H2W1-3|MS4A6A	ENSG00000110077|ENST00000528851|MS4A6A	ENSG00000110077|ENST00000528851|MS4A6A	MULTI-MSMS	OvCa9_classI_Rep2	2	487.2864685058594	2	487.287474	972.560395	-0.58577	-0.00028544	-0.5191	-0.00025295	-1.1049	-0.00053839	487.2873954078766	48.511	1.8372	45.75	45.428	47.266	-2.7603					98	36	4	0	0	0	0.46356	1	3065	3065		45.972	3.5761	1	1108600			35770	2756	29463	29489	39194	39194					0.07301742960282809
LSVLAFRKE	9	Unmodified	_LSVLAFRKE_					0	0	0			REV__ENST00000452404.6_1_3:196669203-196669296:-|nuORF	REV__ENST00000452404.6_1_3:196669203-196669296:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8167114257812	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.5811	1	11513	11513		34.173	0	1	178650	+		35771	25982	29464	29490	39195	39195					0.09498308748334239
LSVLKRVTL	9	Unmodified	_LSVLKRVTL_					0	0	0			REV__ENST00000173229.6_1_17:9144472-9144925:+|nuORF	REV__ENST00000173229.6_1_17:9144472-9144925:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	514.8035888671875	2	514.844959	1027.67537	-0.38535	-0.00019839	0.98074	0.00050493	0.59539	0.00030653	514.845251812966	94.059	1.2162	92.145	91.827	93.043	-1.9149					44	23	3	0	0	0	0.027462	1	6157	6157		21.96	1.013	1	50951	+		35772	23686	29465	29491	39196	39196					0.16263472162086146
LSVLNGDEAL	10	Unmodified	_LSVLNGDEAL_					0	0	0			REV__nc|nan|Q8WYQ4-2|C22orf15	REV__nc|nan|Q8WYQ4-2|C22orf15	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.7601928710938	2	515.774396	1029.53424	0.9008	0.00046461	-2.208	-0.0011388	-1.3072	-0.00067422	515.7731978703805	126.44	0.83704	126.21	125.85	126.69	-0.2359					32	16	3	0	0	0	0.026493	1	12318	12318		90.601	13.283	1	33620	+		35773	21454	29466	29492	39197	39197					0.02065428998139396
LSVMGVCLLI	10	Unmodified	_LSVMGVCLLI_					0	0	0		ENSG00000125356|ENST00000371437|NDUFA1	ENSG00000125356|ENST00000371437|NDUFA1	ENSG00000125356|ENST00000371437|NDUFA1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.784912109375	2	524.300681	1046.58681	-0.7687	-0.00040303	3.5299	0.0018507	2.7612	0.0014477	524.3028487768953	105.76	1.6848	103.75	103.35	105.03	-2.0161					127	32	6	0	0	0	0.026519	1	9594	9594		55.504	0	1	490850			35774	3702	29467	29493	39198	39198					0.06537972535761583
LSVMGVCLLI	10	Unmodified	_LSVMGVCLLI_					0	0	0		ENSG00000125356|ENST00000371437|NDUFA1	ENSG00000125356|ENST00000371437|NDUFA1	ENSG00000125356|ENST00000371437|NDUFA1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	524.300681	1046.58681	-0.54997	-0.00028835	3.9118	0.002051	3.3618	0.0017626	524.3026183842553	104.11	1.3344	103.53	103.08	104.41	-0.57639	-0.13697	0.00029791	NaN	55.504	46	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405540			35775	3702	29467	29493							0.06537972535761583
LSVMGVCLLI	10	Unmodified	_LSVMGVCLLI_					0	0	0		ENSG00000125356|ENST00000371437|NDUFA1	ENSG00000125356|ENST00000371437|NDUFA1	ENSG00000125356|ENST00000371437|NDUFA1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	524.300681	1046.58681	0.013021	6.8271E-06	2.7651	0.0014498	2.7782	0.0014566	524.3024889207572	105.07	1.5097	103.73	103.31	104.82	-1.3482	0.059163	-0.00090449	NaN	55.504	127	28	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	477310			35776	3702	29467	29493							0.06537972535761583
LSVPEPKP	8	Unmodified	_LSVPEPKP_					0	0	0			REV__ENSG00000175727|ENST00000319080|MLXIP;REV__nc|ENSG00000175727|Q9HAP2-4|MLXIP	REV__ENSG00000175727|ENST00000319080|MLXIP	MULTI-MSMS	OvCa99_classI_Rep5	1	433.75421142578125	2	433.752736	865.490919	2.6891	0.0011664	-0.11668	-5.061E-05	2.5724	0.0011158	433.75254136505777	100.33	3.1055	100.33	99.318	102.42	0					177	73	3	0	0	0	0.17531	1	11237	11237		128.86	3.0471	1	3963700	+		35777	21911;29017	29468	29494	39199	39199					0.05279284011521668
LSVPFQALREQ	11	Unmodified	_LSVPFQALREQ_					0	0	0		tr|A0A553SJI0|A0A553SJI0_NIACIBifunctionalmetallophosphatase/5'-nucleotidaseOS=NialliacirculansOX=1397GN=CEQ21_16730PE=3SV=1	tr|A0A553SJI0|A0A553SJI0_NIACIBifunctionalmetallophosphatase/5'-nucleotidaseOS=NialliacirculansOX=1397GN=CEQ21_16730PE=3SV=1	tr|A0A553SJI0|A0A553SJI0_NIACIBifunctionalmetallophosphatase/5'-nucleotidaseOS=NialliacirculansOX=1397GN=CEQ21_16730PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	644.3502807617188	2	644.356419	1286.69829	-6.1065	-0.0039348	-4.192	-0.0027011	-10.298	-0.0066359	644.3535517231257	156.22	1.1461	155.15	154.82	155.96	-1.073					70	25	4	0	0	0	0.71789	1	13431	13431		23.523	0.94304	1	162170			35778	33505	29469	29495	39200	39200					0.06640446488859197
LSVPKPPVT	9	Unmodified	_LSVPKPPVT_					0	0	0			REV__nc|ENSG00000146147|Q5VWP3-1|MLIP	REV__nc|ENSG00000146147|Q5VWP3-1|MLIP	MULTI-SECPEP	OvCa9_classI_Rep3	3	469.2540283203125	2	469.289485	936.564418	-0.81053	-0.00038037	-4.4642	-0.002095	-5.2747	-0.0024754	469.2864743732373	86.582	0.25049	84.405	84.23	84.481	-2.1768					7	4	2	0	0	0	0.027072	1	5152	5152		101.6	35.171	1	12299	+		35779	19996	29470	29496	39201	39201					0.09359832453992567
LSVPPLVEVM	10	Unmodified	_LSVPPLVEVM_					0	0	0		ENST00000588303.1_1_19:45312375-45314729:+|nuORF;BCAM|p.S491Qfs*33|1|0.06|ENSG00000187244|chr19:44819182-44819183|-/G|frameshift_variant;ENSG00000187244|ENST00000270233|BCAM	ENST00000588303.1_1_19:45312375-45314729:+|nuORF	ENST00000588303.1_1_19:45312375-45314729:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.2890625	2	542.309561	1082.60457	-0.059551	-3.2295E-05	2.4624	0.0013354	2.4029	0.0013031	542.3114716532273	71.048	0.15611	71.048	70.994	71.15	0					5	3	2	0	0	0	0.027021	1	6862	6862		29.15	17.639	1	136180			35780	146	29471	29497	39202	39202					0.06657011062247875
LSVPRPKR	8	Unmodified	_LSVPRPKR_					0	0	0			REV__nc|ENSG00000077235|Q12789-3|GTF3C1	REV__nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-MSMS	OvCa9_classI_Rep2	2	476.8065185546875	2	476.806168	951.597784	0.28578	0.00013626	-0.46686	-0.0002226	-0.18107	-8.6337E-05	476.80579878083404	40.986	1.3783	38.276	37.848	39.226	-2.7097					68	27	3	0	0	0	0.74971	1	2104	2104		26.796	0	1	368580	+		35781	17006	29472	29498	39203	39203					0.12004879016558334
LSVPRSLPS	9	Unmodified	_LSVPRSLPS_					0	0	0		ENST00000575301.5_1_17:7308303-7308447:+|nuORF	ENST00000575301.5_1_17:7308303-7308447:+|nuORF	ENST00000575301.5_1_17:7308303-7308447:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.8206481933594	2	478.282192	954.549831	0.18667	8.928E-05	-0.51552	-0.00024656	-0.32885	-0.00015728	478.28177163712627	81.159	1.052	79.511	78.715	79.767	-1.6485					54	20	3	0	0	0	0.027462	1	6843	6843		32.812	21.301	1	264840			35782	13938	29473	29499	39204	39204					0.07073760305854648
LSVQGSHKRSL	11	Unmodified	_LSVQGSHKRSL_					0	0	0		nc|ENSG00000275066|Q9UMZ2-6|SYNRG;nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG	nc|ENSG00000275066|Q9UMZ2-6|SYNRG	nc|ENSG00000275066|Q9UMZ2-6|SYNRG	MULTI-MSMS	OvCa9_classI_Rep2	2	404.56732177734375	3	404.566683	1210.67822	0.79406	0.00032125	-0.64518	-0.00026102	0.14888	6.0232E-05	404.56637749342775	57.563	1.4	54.771	54.328	55.728	-2.792					63	27	3	0	0	0	0.68059	1	4122	4122		36.318	2.396	1	302680			35783	9567	29474	29500	39205	39205					0.0813069554892536
LSVRHIRR	8	Unmodified	_LSVRHIRR_					0	0	0			REV__nc|ENSG00000197568|Q9XRX5-2|ANKRD13C-DT	REV__nc|ENSG00000197568|Q9XRX5-2|ANKRD13C-DT	MULTI-MSMS	OvCa9_classI_Rep3	3	518.8279418945312	2	518.827966	1035.64138	1.7024	0.00088324	0.51806	0.00026878	2.2204	0.001152	518.8281964515016	122.5	2.5536	121.47	120.64	123.19	-1.0286					133	48	4	0	0	0	0.53531	1	9396	9396		73.975	2.0973	1	994930	+		35784	29084	29475	29501	39206	39206					0.12498488513710981
LSVRKSKSGT	10	Unmodified	_LSVRKSKSGT_					0	0	0			REV__nc|ENSG00000019102|Q96IQ7-2|VSIG2	REV__nc|ENSG00000019102|Q96IQ7-2|VSIG2	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8164672851562	2	531.81693	1061.61931	-1.8698	-0.0009944	1.8263	0.00097126	-0.043512	-2.3141E-05	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.75313	1	13930	13930		24.519	4.0374	1	166960	+		35785	16533	29476	29502	39207	39207					0.09096219254638527
LSVRKSKSGT	10	Unmodified	_LSVRKSKSGT_					0	0	0			REV__nc|ENSG00000019102|Q96IQ7-2|VSIG2	REV__nc|ENSG00000019102|Q96IQ7-2|VSIG2	MSMS	OvCa9_classI_Rep4_	4	531.8167114257812	2	531.81693	1061.61931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.05	1	134.51	134.01	135.01	-1.5437								0	0	0	0.13543	1	13190	13190		29.17	8.6882	1		+		35786	16533	29476	29502	39208	39208					0.09096219254638527
LSVRQLPAE	9	Unmodified	_LSVRQLPAE_					0	0	0		ENST00000600059.5_1_19:48988799-49002658:-|nuORF	ENST00000600059.5_1_19:48988799-49002658:-|nuORF	ENST00000600059.5_1_19:48988799-49002658:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	506.7927551269531	2	506.792924	1011.57129	-1.4847	-0.00075246	0.93079	0.00047172	-0.55395	-0.00028074	506.7934294899102	52.807	1.2341	49.993	49.591	50.826	-2.8139					59	24	4	0	0	0	0.48047	1	3534	3534		44.377	1.981	1	256810			35787	14215	29477	29503	39209	39209					0.06597145334569632
LSVRQLPAE	9	Unmodified	_LSVRQLPAE_					0	0	0		ENST00000600059.5_1_19:48988799-49002658:-|nuORF	ENST00000600059.5_1_19:48988799-49002658:-|nuORF	ENST00000600059.5_1_19:48988799-49002658:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.7945861816406	2	506.792924	1011.57129	-1.0602	-0.00053728	2.1109	0.0010698	1.0508	0.00053253	506.79309840120874	53.137	1.6181	49.929	49.502	51.12	-3.208					95	31	5	0	0	0	0.16562	1	3229	3229		82.241	5.4664	1	1022800			35788	14215	29477	29503	39210	39210					0.06597145334569632
LSVRVPLLL	9	Unmodified	_LSVRVPLLL_					0	0	0		ENST00000251343.9_1_14:24906506-24906650:+|nuORF	ENST00000251343.9_1_14:24906506-24906650:+|nuORF	ENST00000251343.9_1_14:24906506-24906650:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	505.34130859375	2	505.342052	1008.66955	-0.1959	-9.8999E-05	-1.673	-0.00084545	-1.8689	-0.00094444	505.3408478582907	133.56	2.7048	133.33	132.13	134.83	-0.22697					158	54	5	0	0	0	0.50149	1	13239	13239		42.396	1.618	1	1592700			35789	9797	29478	29504	39211	39211					0.16556373650416845
LSVSRKLPS	9	Unmodified	_LSVSRKLPS_					0	0	0			REV__nc|ENSG00000020577|Q9UPU9-2|SAMD4A	REV__nc|ENSG00000020577|Q9UPU9-2|SAMD4A	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.7659606933594	2	493.803291	985.59203	0.36963	0.00018253	-1.0248	-0.00050602	-0.65512	-0.0003235	493.8026783111383	66.948	0.79317	64.287	63.9	64.693	-2.661					23	15	2	0	0	0	0.027247	1	5247	5247		60.118	5.3419	1	22067	+		35790	16541	29479	29505	39212	39212					0.09865735714231505
LSVTDMTGH	9	Unmodified	_LSVTDMTGH_					0	0	0			REV__nc|ENSG00000174442|Q9H900-2|ZWILCH	REV__nc|ENSG00000174442|Q9H900-2|ZWILCH	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.75042724609375	2	480.726392	959.438231	-1.9491	-0.00093699	3.2983	0.0015856	1.3492	0.00064861	480.72846504444533	49.315	0.36429	46.174	45.937	46.301	-3.1416					9	6	2	0	0	0	0.027456	1	2755	2755		30.504	0	1	14306	+		35791	21831	29480	29506	39213	39213					-0.04311042113579333
LSVTSREKT	9	Unmodified	_LSVTSREKT_					0	0	0			REV__nc|ENSG00000088836|Q8NBS3-5|SLC4A11	REV__nc|ENSG00000088836|Q8NBS3-5|SLC4A11	MULTI-SECPEP	OvCa9_classI_Rep3	3	509.80474853515625	2	510.787838	1019.56112	1.8217	0.00093053	2.149	0.0010977	3.9707	0.0020282	510.788757140961	112.19	1.1832	111.08	110.55	111.73	-1.1038					42	23	3	0	0	0	0.027462	1	8257	8257		19.997	0	1	79507	+		35792	17183	29481	29507	39214	39214					0.05212537609315859
LSVTTIVPT	9	Unmodified	_LSVTTIVPT_					0	0	0			REV__ENSG00000179954|ENST00000389623|SSC5D	REV__ENSG00000179954|ENST00000389623|SSC5D	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.7769775390625	2	465.778951	929.543348	2.0038	0.00093333	-4.2157	-0.0019636	-2.2119	-0.0010302	465.77638441145956	130.09	6.1548	128.62	125.6	131.75	-1.4779					205	123	4	0	0	0	0.64427	1	12629	12629		26.693	0	1	56999	+		35793	22149	29482	29508	39215	39215					0.07575822354476713
LSVTVSVTAGR	11	Unmodified	_LSVTVSVTAGR_					0	0	0			REV__ENST00000397683.5_1_21:47735422-47737244:-|nuORF	REV__ENST00000397683.5_1_21:47735422-47737244:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3162841796875	2	545.316763	1088.61897	-2.8527	-0.0015556	2.7212	0.0014839	-0.13151	-7.1714E-05	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.68399	1	11880	11880		35.152	2.3396	1	337600	+		35794	25359	29483	29509	39216	39216					0.07820799534761136
LSVVGKGPSLN	11	Unmodified	_LSVVGKGPSLN_					0	0	0			REV__ENSG00000198176|ENST00000375370|TFDP1	REV__ENSG00000198176|ENST00000375370|TFDP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.2478637695312	2	535.813856	1069.61316	-0.63217	-0.00033872	0.15718	8.422E-05	-0.47499	-0.0002545	535.8138307386953	112.55	1.1034	111.04	110.69	111.79	-1.5111					54	21	4	0	0	0	0.025445	1	10368	10368		35.178	0	1	53794	+		35795	22996	29484	29510	39217	39217					0.08113701023103204
LSVVGKGPSLN	11	Unmodified	_LSVVGKGPSLN_					0	0	0			REV__ENSG00000198176|ENST00000375370|TFDP1	REV__ENSG00000198176|ENST00000375370|TFDP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	535.813856	1069.61316	-0.60242	-0.00032279	1.0462	0.00056058	0.44379	0.00023779	536.3161118095095	111.09	1.1822	110.96	110.73	111.91	-0.13961	-0.071814	0.0018719	NaN	35.178	29	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34198	+		35796	22996	29484	29510							0.08113701023103204
LSVVGKGPSLN	11	Unmodified	_LSVVGKGPSLN_					0	0	0			REV__ENSG00000198176|ENST00000375370|TFDP1	REV__ENSG00000198176|ENST00000375370|TFDP1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	535.813856	1069.61316	2.9026	0.0015552	-3.3228	-0.0017804	-0.42023	-0.00022516	535.8121107339873	112.19	1.1337	111.09	110.7	111.83	-1.1038	0.060958	-0.0028101	NaN	35.178	59	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38390	+		35797	22996	29484	29510							0.08113701023103204
LSVVKKSLI	9	Unmodified	_LSVVKKSLI_					0	0	0		nc|ENSG00000188677|Q9HBI1-3|PARVB;ENSG00000188677|ENST00000338758|PARVB;nc|ENSG00000188677|Q9HBI1-2|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.7659606933594	2	493.83406	985.653567	0.44585	0.00022017	-0.77512	-0.00038278	-0.32927	-0.00016261	493.8335350271686	66.837	1.0414	64.176	63.85	64.892	-2.661					31	20	2	0	0	0	0.027432	1	5247	5247		58.23	8.7884	1	31071			35798	8492	29485	29511	39218	39218					0.1601666741352119
LSVVKKSLI	9	Unmodified	_LSVVKKSLI_					0	0	0		nc|ENSG00000188677|Q9HBI1-3|PARVB;ENSG00000188677|ENST00000338758|PARVB;nc|ENSG00000188677|Q9HBI1-2|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.7673034667969	2	493.83406	985.653567	1.5069	0.00074414	-2.9447	-0.0014542	-1.4379	-0.00071007	493.83238958688213	67.651	0.92912	64.161	63.938	64.867	-3.4902					25	18	2	0	0	0	0.027137	1	5029	5029		67.494	21.521	1	54293			35799	8492	29485	29511	39219	39219					0.1601666741352119
LSVWRGDLT	9	Unmodified	_LSVWRGDLT_					0	0	0			REV__ENSG00000124302|ENST00000650847|CHST8	REV__ENSG00000124302|ENST00000650847|CHST8	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.8235473632812	2	523.785099	1045.55564	0.58494	0.00030638	0.82859	0.000434	1.4135	0.00074039	523.7848091851558	81.288	1.0117	79.64	79.064	80.075	-1.6485					27	19	2	0	0	0	0.027426	1	6834	6834		56.721	0	1	30479	+		35800	18679	29486	29512	39220	39220					0.03468858817495857
LSVYLDTIL	9	Unmodified	_LSVYLDTIL_					0	0	0		ENST00000448464.6_1_8:95942439-95942658:-|nuORF	ENST00000448464.6_1_8:95942439-95942658:-|nuORF	ENST00000448464.6_1_8:95942439-95942658:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.3330078125	2	518.799883	1035.58521	-1.5505	-0.00080442	-1.519	-0.00078807	-3.0696	-0.0015925	518.7989789436191	72.514	1.4552	69.118	68.862	70.317	-3.3961					55	29	2	0	0	0	0.027462	1	5560	5560		44.117	1.7207	1	239510			35801	12019	29487	29513	39221	39221					0.06884378042991557
LSVYRAVLE	9	Unmodified	_LSVYRAVLE_					0	0	0			REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.285888671875	2	525.303124	1048.5917	-0.83425	-0.00043824	0.55475	0.00029141	-0.2795	-0.00014682	525.3033650881732	103.55	1.826	102.89	101.77	103.6	-0.65199					69	26	4	0	0	0	0.027448	1	9516	9516		27.882	0	1	256840	+		35802	16668	29488	29514	39222	39222					0.06934315994362805
LSWACLKGH	9	Unmodified	_LSWACLKGH_					0	0	0		ENSG00000115183|ENST00000263635|TANC1;TANC1|p.T1589Ifs*85|1|0.16|ENSG00000115183|chr2:159230192-159230192|C/-|frameshift_variant;nc|ENSG00000115183|Q9C0D5-2|TANC1;ENST00000470074.1_1_2:160076105-160087520:+|nuORF;nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2	ENSG00000115183|ENST00000263635|TANC1;nc|ENSG00000170921|Q9HCD6|TANC2	ENSG00000115183|ENST00000263635|TANC1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7633972167969	2	507.763112	1013.51167	0.48571	0.00024663	-1.1787	-0.0005985	-0.69299	-0.00035187	507.76242082287587	126.44	3.901	126.2	123.43	127.33	-0.2359					157	78	4	0	0	0	0.22961	1	12323	12323		71.296	5.4925	1	953460			35803	3067;7153	29489	29515	39223	39223					0.005455511195350482
LSWEMSAACW	10	Unmodified	_LSWEMSAACW_					0	0	0		ENST00000498294.5_1_13:95248303-95248405:-|nuORF	ENST00000498294.5_1_13:95248303-95248405:-|nuORF	ENST00000498294.5_1_13:95248303-95248405:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	592.8179931640625	2	592.249177	1182.4838	-0.28759	-0.00017033	-2.9633	-0.001755	-3.2509	-0.0019253	592.2471952321837	47.852	1.0801	47.852	47.638	48.718	0					46	24	3	0	0	0	0.027147	1	3553	3553		15.642	0	1	722340			35804	12821	29490	29516	39224	39224					-0.10014139922873255
LSWGRSIF	8	Unmodified	_LSWGRSIF_					0	0	0			REV__chr10:12170768-12170900|254|37.44|0.68|5.79|-|1|None,NUDT5|1	REV__chr10:12170768-12170900|254|37.44|0.68|5.79|-|1|None,NUDT5|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.2428894042969	2	483.263802	964.513051	1.905	0.00092062	-0.31766	-0.00015351	1.5873	0.00076711	483.2632684834173	87.255	0.24169	87.255	87.096	87.338	0					7	5	2	0	0	0	0.028476	1	9236	9236		30.504	0	1	174470	+		35805	15844	29491	29517	39225	39225					0.029375084799539763
LSWINETLV	9	Unmodified	_LSWINETLV_					0	0	0			REV__tr|A0A553SIF0|A0A553SIF0_NIACINa+/H+antiporterOS=NialliacirculansOX=1397GN=CEQ21_14735PE=3SV=1	REV__tr|A0A553SIF0|A0A553SIF0_NIACINa+/H+antiporterOS=NialliacirculansOX=1397GN=CEQ21_14735PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	537.7929077148438	2	537.795132	1073.57571	-0.73081	-0.00039303	-3.2525	-0.0017492	-3.9833	-0.0021422	537.7933079642246	37.507	0.86303	37.507	37.298	38.161	0					42	18	4	0	0	0	0.14998	1	2054	2054		84.916	0	1	1102500	+		35806	29886	29492	29518	39226	39226					0.04186609757448423
LSWINETLV	9	Unmodified	_LSWINETLV_					0	0	0			REV__tr|A0A553SIF0|A0A553SIF0_NIACINa+/H+antiporterOS=NialliacirculansOX=1397GN=CEQ21_14735PE=3SV=1	REV__tr|A0A553SIF0|A0A553SIF0_NIACINa+/H+antiporterOS=NialliacirculansOX=1397GN=CEQ21_14735PE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	537.795132	1073.57571	-0.73081	-0.00039303	-3.2525	-0.0017492	-3.9833	-0.0021422	537.7933079642246	37.507	0.86303	37.507	37.298	38.161	0	0	0	NaN	84.916	42	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1102500	+		35807	29886	29492	29518							0.04186609757448423
LSWIRPKAEL	10	Unmodified	_LSWIRPKAEL_					0	0	0			REV__ENSG00000113430|ENST00000231357|IRX4	REV__ENSG00000113430|ENST00000231357|IRX4	MULTI-SECPEP	OvCa9_classI_Rep3	3	606.8333740234375	2	606.858598	1211.70264	1.2201	0.00074041	-0.45791	-0.00027789	0.76216	0.00046252	606.8580979620713	88.37	0.30766	86.239	85.957	86.265	-2.1309					7	5	2	0	0	0	0.026657	1	5340	5340		79.713	19.594	1	13771	+		35808	18150	29493	29519	39227	39227					0.10525955702473766
LSWKLPRG	8	Unmodified	_LSWKLPRG_					0	0	0			REV__ENST00000493883.5_1_21:45553616-45561277:+|nuORF	REV__ENST00000493883.5_1_21:45553616-45561277:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	478.7847595214844	2	478.787444	955.560336	-2.4635	-0.0011795	-1.8767	-0.00089854	-4.3402	-0.0020781	478.7864521794397	145.79	1.5385	145.57	144.98	146.52	-0.22696					81	30	4	0	0	0	0.73626	1	14748	14748		33.516	4.366	1	230950	+		35809	26715	29494	29520	39228	39228					0.0807778775093766
LSWPHRSP	8	Unmodified	_LSWPHRSP_					0	0	0		ENST00000367881.9_1_1:165738014-165738236:-|nuORF	ENST00000367881.9_1_1:165738014-165738236:-|nuORF	ENST00000367881.9_1_1:165738014-165738236:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.28546142578125	2	490.259051	978.503549	1.9142	0.00093845	-0.77588	-0.00038038	1.1383	0.00055807	490.25866937333774	76.471	0.68228	76.471	76.158	76.841	0					25	16	2	0	0	0	0.028476	1	7627	7627		40.778	3.7497	1	327500			35810	10856	29495	29521	39229	39229					0.013437401944202065
LSWPKFQSIK	10	Unmodified	_LSWPKFQSIK_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;AHNAK2|p.V1193Hfs*8|1|0.26|ENSG00000185567|chr14:104951874-104951875|-/TTTGGGTG|frameshift_variant;AHNAK2|p.E1685Pfs*13|1|0.05|ENSG00000185567|chr14:104950398-104950399|-/AGACACATGGGTGG|frameshift_variant;AHNAK2|p.F3808Sfs*30|1|0.04|ENSG00000185567|chr14:104944028-104944028|A/-|frameshift_variant;AHNAK2|p.K829Nfs*53|1|0.07|ENSG00000185567|chr14:104952964-104952965|-/TTGG|frameshift_variant	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-MSMS	OvCa9_classI_Rep2	2	617.3500366210938	2	617.353148	1232.69174	-4.0098	-0.0024755	-0.69487	-0.00042898	-4.7047	-0.0029045	617.3525047754998	151.58	1.1368	151.35	150.94	152.08	-0.22696					56	22	4	0	0	0	0.79213	1	15439	15439		19.997	4.355	1	109310			35811	8262	29496	29522	39230	39230					0.08470553328174901
LSWSLAPPQ	9	Unmodified	_LSWSLAPPQ_					0	0	0		tr|A0A553SSD8|A0A553SSD8_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_02915PE=4SV=1	tr|A0A553SSD8|A0A553SSD8_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_02915PE=4SV=1	tr|A0A553SSD8|A0A553SSD8_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_02915PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.3093566894531	2	499.768917	997.523281	1.6601	0.00082968	-0.090939	-4.5449E-05	1.5692	0.00078423	499.7683212591791	120.04	0.26005	120.04	119.88	120.14	0					10	5	2	0	0	0	0.027462	1	13781	13781		45.952	0	1	41233			35812	34362	29497	29523	39231	39231					0.024420714145207967
LSYCPGMGVA	10	Unmodified	_LSYCPGMGVA_					0	0	0		ENSG00000018625|ENST00000361216|ATP1A2;nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENST00000479960.1_1_1:116943772-116944278:+|nuORF	ENSG00000018625|ENST00000361216|ATP1A2;nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.75274658203125	2	499.227713	996.440874	-0.8052	-0.00040198	4.116	0.0020548	3.3109	0.0016529	499.22891044175503	97.536	0.44148	95.777	95.569	96.011	-1.7595					11	8	2	0	0	0	0.026669	1	6487	6487		23.042	0	1	20558			35813	6300;1014	29498	29524	39232	39232					-0.057489099802864985
LSYGSRFCY	9	Unmodified	_LSYGSRFCY_					0	0	0		ENSG00000186971|ENST00000334068|KRTAP13-4	ENSG00000186971|ENST00000334068|KRTAP13-4	ENSG00000186971|ENST00000334068|KRTAP13-4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.2953491210938	2	548.250034	1094.48552	0.46605	0.00025551	-2.8914	-0.0015852	-2.4254	-0.0013297	548.7509797950412	33.291	0.19891	30.595	30.452	30.651	-2.6954					6	3	2	0	0	0	0.027462	1	865	865		24.203	0	1	13158			35814	8379	29499	29525	39233	39233					-0.0579476284260636
LSYHLCTPLG	10	Unmodified	_LSYHLCTPLG_					0	0	0		ENST00000261942.6_1_5:175934624-175934870:+|nuORF	ENST00000261942.6_1_5:175934624-175934870:+|nuORF	ENST00000261942.6_1_5:175934624-175934870:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.7992553710938	2	552.281334	1102.54812	0.4199	0.0002319	-1.0851	-0.0005993	-0.66523	-0.00036739	552.2806650497477	89.894	2.0748	87.319	86.704	88.779	-2.575					66	40	2	0	0	0	0.026639	1	7768	7768		53.351	15.54	1	46886			35815	9878	29500	29526	39234	39234					0.0009438322558708023
LSYHLCTPLG	10	Unmodified	_LSYHLCTPLG_					0	0	0		ENST00000261942.6_1_5:175934624-175934870:+|nuORF	ENST00000261942.6_1_5:175934624-175934870:+|nuORF	ENST00000261942.6_1_5:175934624-175934870:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	552.281334	1102.54812	2.4471	0.0013515	-2.5176	-0.0013904	-0.070567	-3.8973E-05	552.2796130928847	88.795	1.875	87.427	86.69	88.565	-1.3676	-0.057533	-0.0015908	NaN	53.351	74	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35918			35816	9878	29500	29526							0.0009438322558708023
LSYHLCTPLG	10	Unmodified	_LSYHLCTPLG_					0	0	0		ENST00000261942.6_1_5:175934624-175934870:+|nuORF	ENST00000261942.6_1_5:175934624-175934870:+|nuORF	ENST00000261942.6_1_5:175934624-175934870:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	552.281334	1102.54812	-0.96835	-0.0005348	0.6022	0.00033258	-0.36615	-0.00020222	552.2815337200884	89.788	1.8223	87.708	86.848	88.67	-2.0805	0.22321	0.0018552	NaN	53.351	75	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64977			35817	9878	29500	29526							0.0009438322558708023
LSYIRIIIV	9	Unmodified	_LSYIRIIIV_					0	0	0		OR6K6|p.F312Sfs*8|1|0.46|ENSG00000180433|chr1:158755746-158755746|T/-|frameshift_variant;ENSG00000180433|ENST00000641861|OR6K6;nc|ENSG00000180433|Q8NGW6|OR6K6	OR6K6|p.F312Sfs*8|1|0.46|ENSG00000180433|chr1:158755746-158755746|T/-|frameshift_variant	OR6K6|p.F312Sfs*8|1|0.46|ENSG00000180433|chr1:158755746-158755746|T/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2515258789062	2	545.35516	1088.69577	0.95976	0.00052341	4.4422	0.0024226	5.402	0.002946	545.3575133495574	156.26	0.80737	156.26	155.99	156.8	0					35	15	3	0	0	0	0.027462	1	18351	18351		42.396	0	1	112460			35818	7873	29501	29527	39235	39235					0.1549664282190406
LSYKFTIIK	9	Unmodified	_LSYKFTIIK_					0	0	0		tr|A0A553SNE8|A0A553SNE8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24310PE=4SV=1	tr|A0A553SNE8|A0A553SNE8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24310PE=4SV=1	tr|A0A553SNE8|A0A553SNE8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24310PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	557.3076171875	2	556.839342	1111.66413	-0.47097	-0.00026226	-0.011865	-6.6072E-06	-0.48284	-0.00026886	556.8392372303663	78.85	1.5031	76.51	76.06	77.563	-2.3399					64	29	3	0	0	0	0.027462	1	4304	4304		37.812	7.4938	1	126900			35819	33920	29502	29528	39236	39236					0.11276650067952687
LSYNTVEP	8	Unmodified	_LSYNTVEP_					0	0	0			REV__nc|ENSG00000157404|P10721-2|KIT	REV__nc|ENSG00000157404|P10721-2|KIT	MULTI-SECPEP	OvCa9_classI_Rep4_	4	460.7589111328125	2	461.729458	921.444362	-0.3582	-0.00016539	-3.0199	-0.0013944	-3.3781	-0.0015598	461.7278089037559	89.345	0.6878	86.742	86.483	87.171	-2.6027					28	13	4	0	0	0	0.028476	1	7652	7652		38.806	0	1	29840	+		35820	20519	29503	29529	39237	39237					-0.019502006104175962
LSYPGNLER	9	Unmodified	_LSYPGNLER_					0	0	0		ENST00000514430.5_1_4:103635650-103635701:-|nuORF	ENST00000514430.5_1_4:103635650-103635701:-|nuORF	ENST00000514430.5_1_4:103635650-103635701:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	524.7760009765625	2	524.774731	1047.53491	1.4791	0.00077619	-1.4818	-0.00077762	-0.0027326	-1.434E-06	524.7737345480416	29.141	0.47323	26.432	26.259	26.732	-2.7097					18	9	2	0	0	0	0.63422	1	677	677		27.882	2.3082	1	25571			35821	13028	29504	29530	39238	39238					0.013042684378660852
LSYRYCPN	8	Unmodified	_LSYRYCPN_					0	0	0		nc|ENSG00000028116|Q86Y07-4|VRK2;nc|ENSG00000028116|Q86Y07-3|VRK2;ENSG00000028116|ENST00000340157|VRK2;nc|ENSG00000028116|Q86Y07-5|VRK2;nc|ENSG00000028116|Q86Y07-2|VRK2	nc|ENSG00000028116|Q86Y07-4|VRK2	nc|ENSG00000028116|Q86Y07-4|VRK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.8144836425781	2	508.236927	1014.4593	-0.5741	-0.00029178	2.6851	0.0013647	2.111	0.0010729	508.2380790094411	53.67	0.25504	53.67	53.519	53.774	0					9	5	2	0	0	0	0.028476	1	4279	4279		29.15	0	1	227970			35822	1057	29505	29531	39239	39239					-0.04735032014082208
LTAATASILL	10	Unmodified	_LTAATASILL_					0	0	0		ENST00000550533.1_1_12:51467850-51470340:-|nuORF	ENST00000550533.1_1_12:51467850-51470340:-|nuORF	ENST00000550533.1_1_12:51467850-51470340:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.31524658203125	2	487.30005	972.585547	-1.5401	-0.0007505	0.75476	0.0003678	-0.78536	-0.0003827	487.3003561789549	104.42	0.42265	104.42	104.24	104.66	0					16	9	2	0	0	0	0.02661	1	11710	11710		68.787	2.9837	1	178150			35823	13589	29506	29532	39240	39240					0.09815797762871625
LTADRPHEL	9	Unmodified	_LTADRPHEL_					0	0	0		tr|A0A553SJQ5|A0A553SJQ5_NIACI2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylatesynthaseOS=NialliacirculansOX=1397GN=menDPE=3SV=1	tr|A0A553SJQ5|A0A553SJQ5_NIACI2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylatesynthaseOS=NialliacirculansOX=1397GN=menDPE=3SV=1	tr|A0A553SJQ5|A0A553SJQ5_NIACI2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylatesynthaseOS=NialliacirculansOX=1397GN=menDPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.7701416015625	2	526.28018	1050.54581	0.79162	0.00041661	0.056687	2.9833E-05	0.8483	0.00044645	526.279492374931	150.68	0.30156	150.68	150.54	150.84	0					8	5	2	0	0	0	0.027461	1	17642	17642		49.442	0	1	20900			35824	33531	29507	29533	39241	39241					0.022556708121328484
LTAERQWF	8	Unmodified	_LTAERQWF_					0	0	0			REV__HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|64|3|sense	REV__HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|64|3|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.2932739257812	2	525.771991	1049.52943	-1.2866	-0.00067647	-1.517	-0.00079757	-2.8036	-0.001474	525.7707379247705	40.507	0.88908	37.553	37.368	38.257	-2.9541					25	16	2	0	0	0	0.028476	1	1739	1739		40.573	0	1	57731	+		35825	28286	29508	29534	39242	39242					0.006645896460213407
LTAGMLDQPG	10	Unmodified	_LTAGMLDQPG_					0	0	0		ENST00000511325.1_1_3:128623240-128628375:+|nuORF;ENST00000505192.5_1_3:128598473-128627108:+|nuORF;ENSG00000177646|ENST00000308982|ACAD9	ENST00000511325.1_1_3:128623240-128628375:+|nuORF	ENST00000511325.1_1_3:128623240-128628375:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.7945556640625	2	501.749867	1001.48518	1.4297	0.00071734	-2.1686	-0.0010881	-0.73889	-0.00037074	501.7484288927968	83.691	0.67363	83.691	83.335	84.009	0					28	15	3	0	0	0	0.02658	1	8692	8692		64.207	25.401	1	381270			35826	7702	29509	29535	39243	39243					-0.01550182562448299
LTAHYPLKV	9	Unmodified	_LTAHYPLKV_					0	0	0			REV__ENSG00000182156|ENST00000328313|ENPP7	REV__ENSG00000182156|ENST00000328313|ENPP7	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.8463745117188	2	521.30821	1040.60187	1.7203	0.00089681	3.5211	0.0018356	5.2414	0.0027324	521.3102419223807	95.074	0.6767	95.074	94.861	95.538	0					30	15	3	0	0	0	0.027455	1	10339	10339		34.173	0	1	1177300	+		35827	22265	29510	29536	39244	39244					0.08318923719616578
LTAIFDRKIEG	11	Unmodified	_LTAIFDRKIEG_					0	0	0			REV__nc|ENSG00000047849|P27816-2|MAP4	REV__nc|ENSG00000047849|P27816-2|MAP4	MULTI-MSMS	OvCa9_classI_Rep4_	4	631.8617553710938	2	631.858795	1261.70304	-0.63172	-0.00039916	0.6091	0.00038486	-0.022627	-1.4297E-05	631.8590999579563	92.26	1.5141	89.718	89.364	90.878	-2.5425					86	29	4	0	0	0	0.54114	1	8005	8005		50.034	5.0113	1	480920	+		35828	16662	29511	29537	39245	39245					0.0826533063163879
LTAIKELNK	9	Unmodified	_LTAIKELNK_					0	0	0			REV__ENST00000264670.10_1_5:6625692-6625764:-|nuORF	REV__ENST00000264670.10_1_5:6625692-6625764:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7820434570312	2	515.318774	1028.623	-0.88643	-0.00045679	2.6284	0.0013544	1.7419	0.00089766	515.318573548726	117.83	1.0481	116.48	115.9	116.94	-1.3444					35	19	3	0	0	0	0.027459	1	11050	11050		62.107	10.772	1	60978	+		35829	24020	29512	29538	39246	39246					0.1098288902846889
LTAILGLPE	9	Unmodified	_LTAILGLPE_					0	0	0		nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3	nc|ENSG00000074370|Q93084-4|ATP2A3	nc|ENSG00000074370|Q93084-4|ATP2A3	MULTI-MSMS	OvCa99_classI_Rep5	1	463.7797546386719	2	463.781493	925.548434	-0.37025	-0.00017171	-2.2516	-0.0010442	-2.6218	-0.001216	463.7802277365593	35.305	0.65493	35.305	35.052	35.707	0					21	13	2	0	0	0	0.61208	1	1776	1776		30.504	1.3541	1	382230			35830	1511	29513	29539	39247	39247					0.08268126217092231
LTAILGLPE	9	Unmodified	_LTAILGLPE_					0	0	0		nc|ENSG00000074370|Q93084-4|ATP2A3;ENSG00000074370|ENST00000397041|ATP2A3;nc|ENSG00000074370|Q93084-3|ATP2A3;nc|ENSG00000074370|Q93084-7|ATP2A3;nc|ENSG00000074370|Q93084-1|ATP2A3;nc|ENSG00000074370|Q93084-6|ATP2A3;nc|ENSG00000074370|Q93084-5|ATP2A3	nc|ENSG00000074370|Q93084-4|ATP2A3	nc|ENSG00000074370|Q93084-4|ATP2A3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	463.781493	925.548434	-0.052732	-2.4456E-05	-2.2296	-0.001034	-2.2823	-0.0010585	463.78049292029266	38.611	0.6431	35.685	35.305	35.948	-2.9264	0.18979	1.1881E-05	NaN	30.504	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32102			35831	1511	29513	29539							0.08268126217092231
LTAKKLLLL	9	Unmodified	_LTAKKLLLL_					0	0	0		ENSG00000095066|ENST00000397668|HOOK2;nc|ENSG00000095066|Q96ED9-2|HOOK2	ENSG00000095066|ENST00000397668|HOOK2	ENSG00000095066|ENST00000397668|HOOK2	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.8119201660156	2	506.860078	1011.7056	-0.95777	-0.00048545	1.4924	0.00075642	0.53459	0.00027096	506.86128463446056	89.296	0.44412	87.165	86.944	87.388	-2.1309					14	8	2	0	0	0	0.027402	1	5494	5494		66.429	18.772	1	15811			35832	1920	29514	29540	39248	39248					0.20021830827283793
LTAKKRKLEDK	11	Unmodified	_LTAKKRKLEDK_					0	0	0		MYH2|p.E952K|1|0.07|ENSG00000125414|chr17:10529918-10529918|C/T|missense_variant	MYH2|p.E952K|1|0.07|ENSG00000125414|chr17:10529918-10529918|C/T|missense_variant	MYH2|p.E952K|1|0.07|ENSG00000125414|chr17:10529918-10529918|C/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.9324951171875	3	443.945271	1328.81398	0.30652	0.00013608	1.6484	0.00073179	1.9549	0.00086787	443.94613387257357	28.814	0.24914	28.814	28.688	28.937	0					8	4	2	0	0	0	0.026101	1	970	970		21.032	2.5012	1	21574			35833	14849	29515	29541	39249	39249					0.16272970339741732
LTAKLPSVP	9	Unmodified	_LTAKLPSVP_					0	0	0			REV__EIF4G1|p.A1236T|1|0.07|ENSG00000114867|chr3:184327630-184327630|G/A|missense_variant	REV__EIF4G1|p.A1236T|1|0.07|ENSG00000114867|chr3:184327630-184327630|G/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	464.2608947753906	2	463.289485	924.564418	-0.34314	-0.00015897	0.50379	0.0002334	0.16065	7.4428E-05	463.28954440555304	78.592	1.0895	76.239	75.9	76.989	-2.3527					43	21	3	0	0	0	0.027432	1	4179	4179		49.536	8.7579	1	211400	+		35834	16350	29516	29542	39250	39250					0.0991183245398588
LTAKQGLLLA	10	Unmodified	_LTAKQGLLLA_					0	0	0			REV__tr|A0A553ST26|A0A553ST26_NIACIEnergycouplingfactortransporterScomponentThiWOS=NialliacirculansOX=1397GN=thiWPE=4SV=1	REV__tr|A0A553ST26|A0A553ST26_NIACIEnergycouplingfactortransporterScomponentThiWOS=NialliacirculansOX=1397GN=thiWPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.8080444335938	2	514.329142	1026.64373	0.24494	0.00012598	-0.43291	-0.00022266	-0.18797	-9.6678E-05	514.3287440864856	111.35	2.3205	109.84	109.37	111.69	-1.5111					105	44	3	0	0	0	0.026849	1	10362	10362		13.454	0	1	71146	+		35835	30907	29517	29543	39251	39251					0.13147479408166873
LTALAIAEVE	10	Unmodified	_LTALAIAEVE_					0	0	0			REV__ENSG00000178921|ENST00000314666|PFAS	REV__ENSG00000178921|ENST00000314666|PFAS	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2736206054688	2	515.294965	1028.57538	1.1683	0.000602	4.0124	0.0020676	5.1806	0.0026696	515.2972915824465	79.293	0.23273	79.293	79.119	79.352	0					7	5	2	0	0	0	0.026665	1	8074	8074		34.173	7.4796	1	106270	+		35836	22087	29518	29544	39252	39252					0.062231900375991245
LTALAIAEVE	10	Unmodified	_LTALAIAEVE_					0	0	0			REV__ENSG00000178921|ENST00000314666|PFAS	REV__ENSG00000178921|ENST00000314666|PFAS	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.294965	1028.57538	0.51216	0.00026391	10.681	0.0055041	11.194	0.005768	515.2999423645479	81.288	0.95813	79.64	79.013	79.971	-1.6485	0.24311	0.0018207	NaN	47.657	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25983	+		35837	22087	29518	29544							0.062231900375991245
LTALAIAEVE	10	Unmodified	_LTALAIAEVE_					0	0	0			REV__ENSG00000178921|ENST00000314666|PFAS	REV__ENSG00000178921|ENST00000314666|PFAS	MULTI-MATCH	OvCa9_classI_Rep3	3		2	515.294965	1028.57538	-0.060506	-3.1178E-05	9.4968	0.0048937	9.4363	0.0048625	515.3005180470002	81.581	0.55116	79.258	79.057	79.608	-2.3226	-0.13887	0.0005999	NaN	47.657	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41298	+		35838	22087	29518	29544							0.062231900375991245
LTALDRSPI	9	Unmodified	_LTALDRSPI_					0	0	0			REV__ENSG00000015133|ENST00000389857|CCDC88C	REV__ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MSMS	OvCa99_classI_Rep5	1	493.28753662109375	2	493.287474	984.560395	1.7115	0.00084424	0.18103	8.9297E-05	1.8925	0.00093354	493.2875516090758	92.059	0.79984	92.059	91.794	92.594	0					25	18	2	0	0	0	0.3249	1	9936	9936		60.118	3.3972	1	778750	+		35839	16514	29519	29545	39253	39253					0.06749742960278127
LTALFYALE	9	Unmodified	_LTALFYALE_					0	0	0		NLRP7|p.S610Tfs*6|1|0.07|ENSG00000167634|chr19:54938990-54938991|-/GGAGGTTGCAG|frameshift_variant;nc|ENSG00000167634|Q8WX94|NLRP7;nc|ENSG00000167634|Q8WX94-2|NLRP7;ENSG00000167634|ENST00000588756|NLRP7	NLRP7|p.S610Tfs*6|1|0.07|ENSG00000167634|chr19:54938990-54938991|-/GGAGGTTGCAG|frameshift_variant	NLRP7|p.S610Tfs*6|1|0.07|ENSG00000167634|chr19:54938990-54938991|-/GGAGGTTGCAG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.3341674804688	2	520.786776	1039.559	-0.22348	-0.00011638	-2.3399	-0.0012186	-2.5634	-0.001335	520.7853433057032	67.237	0.93915	64.576	64.347	65.286	-2.661					28	18	2	0	0	0	0.027462	1	5237	5237		30.504	1.3541	1	25909			35840	6819	29520	29546	39254	39254					0.040801088714943035
LTALKTLHG	9	Unmodified	_LTALKTLHG_					0	0	0			REV__ENSG00000153107|ENST00000341068|ANAPC1;REV__ENST00000485325.1_1_2:112560984-112579093:-|nuORF	REV__ENST00000485325.1_1_2:112560984-112579093:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	477.293701171875	2	477.292559	952.570566	-0.044958	-2.1458E-05	0.16025	7.6485E-05	0.11529	5.5027E-05	477.2925169309121	73.135	1.9425	73.135	72.574	74.517	0					128	49	4	0	0	0	0.16524	2	7180	7180;7211		82.305	1.9564	1	9896800	+		35841	20321;26562	29521	29547	39255;39256	39255					0.09238350685529895
LTALKTLHG	9	Unmodified	_LTALKTLHG_					0	0	0			REV__ENSG00000153107|ENST00000341068|ANAPC1;REV__ENST00000485325.1_1_2:112560984-112579093:-|nuORF	REV__ENST00000485325.1_1_2:112560984-112579093:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	477.2930603027344	2	477.292559	952.570566	0.29004	0.00013844	-0.76416	-0.00036473	-0.47411	-0.00022629	477.2921516413295	74.448	4.0947	72.038	71.151	75.246	-2.4106					206	80	5	0	0	0	0.091859	4	3701	3672;3701;3726;3738		99.375	25.12	1	1964800	+		35842	20321;26562	29521	29547	39257;39258;39259;39260	39258					0.09238350685529895
LTALKTLHG	9	Unmodified	_LTALKTLHG_					0	0	0			REV__ENSG00000153107|ENST00000341068|ANAPC1;REV__ENST00000485325.1_1_2:112560984-112579093:-|nuORF	REV__ENST00000485325.1_1_2:112560984-112579093:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.2937927246094	2	477.292559	952.570566	0.39694	0.00018945	-1.4485	-0.00069137	-1.0516	-0.00050192	477.29185594906585	75.379	3.415	72.148	71.434	74.849	-3.2308					203	70	5	0	0	0	0.062324	2	5989	5929;5989		111.65	4.6408	1	4466900	+		35843	20321;26562	29521	29547	39261;39262	39262					0.09238350685529895
LTALVFHGDL	10	Unmodified	_LTALVFHGDL_					0	0	0			REV__ENST00000535644.1_1_11:67163166-67165027:+|nuORF	REV__ENST00000535644.1_1_11:67163166-67165027:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.8410034179688	2	543.303124	1084.5917	2.4883	0.0013519	-1.4175	-0.00077015	1.0708	0.00058176	543.3033557136639	75.066	0.64084	75.066	74.841	75.482	0					26	15	2	0	0	0	0.026734	1	7468	7468		47.657	7.0847	1	1795100	+		35844	21715	29522	29548	39263	39263					0.05278315994382865
LTAMGYLLEY	10	Unmodified	_LTAMGYLLEY_					0	0	0		tr|A0A7D6VRN2|A0A7D6VRN2_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12850PE=4SV=1	tr|A0A7D6VRN2|A0A7D6VRN2_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12850PE=4SV=1	tr|A0A7D6VRN2|A0A7D6VRN2_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12850PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	587.2953491210938	2	587.29665	1172.57875	-1.0296	-0.0006047	-1.8051	-0.0010601	-2.8347	-0.0016648	587.295447025385	119.26	2.5013	118.23	117.93	120.43	-1.0271					129	49	5	0	0	0	0.6104	1	9005	9005		40.778	1.972	1	734600			35845	34945	29523	29549	39264	39264					-0.0006388318004155735
LTANGMKVVL	10	Oxidation (M)	_LTANGM(Oxidation (M))KVVL_		LTANGM(1)KVVL		LTANGM(51)KVVL	0	0	1		tr|A0A553SKB8|A0A553SKB8_NIACINAD-dependentepimerase/dehydratasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_18500PE=3SV=1	tr|A0A553SKB8|A0A553SKB8_NIACINAD-dependentepimerase/dehydratasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_18500PE=3SV=1	tr|A0A553SKB8|A0A553SKB8_NIACINAD-dependentepimerase/dehydratasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_18500PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	531.3059692382812	2	531.30481	1060.59507	0.86599	0.00046011	-1.9098	-0.0010147	-1.0438	-0.00055459	531.3036952505744	132.34	1.0897	132.34	131.95	133.04	0					39	22	3	0	0	0	0.52439	1	15372	15372		51.193	10.415	1	152130			35846	33598	29524	29550	39265	39265		738			0.0671924277673952
LTANRQGGH	9	Unmodified	_LTANRQGGH_					0	0	0			REV__ENST00000379061.8_1_17:26712241-26725107:+|nuORF	REV__ENST00000379061.8_1_17:26712241-26725107:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.293701171875	2	477.249215	952.483876	-0.20281	-9.679E-05	0.82978	0.00039601	0.62697	0.00029922	477.2512874607332	73.13	0.28178	73.13	73.035	73.317	0					9	6	2	0	0	0	0.027392	1	7180	7180		85.359	3.0545	1	215080	+		35847	25151	29525	29551	39266	39266					0.005733641836627612
LTAPMSPPQ	9	Unmodified	_LTAPMSPPQ_					0	0	0			REV__ENST00000373511.6_1_9:128200772-128200961:-|nuORF	REV__ENST00000373511.6_1_9:128200772-128200961:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.2578430175781	2	471.241678	940.468803	0.037292	1.7574E-05	4.1957	0.0019772	4.233	0.0019948	471.24358789247697	46.997	0.57373	46.997	46.762	47.336	0					24	12	4	0	0	0	0.027462	1	3362	3362		20.947	14.634	1	220470	+		35848	25043	29526	29552	39267	39267					-0.003812637285477649
LTAPPRAVE	9	Unmodified	_LTAPPRAVE_					0	0	0			REV__ENST00000535325.5_1_3:45961332-45961530:-|nuORF	REV__ENST00000535325.5_1_3:45961332-45961530:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.29364013671875	2	477.274367	952.53418	0.17493	8.3489E-05	0.56533	0.00026982	0.74026	0.00035331	477.2742101347354	74.793	0.91684	71.562	71.192	72.109	-3.2308					23	18	2	0	0	0	0.027017	1	5929	5929		82.241	0	1	92467	+		35849	27284	29527	29553	39268	39268					0.056014737887949195
LTAQLQEMKN	10	Oxidation (M)	_LTAQLQEM(Oxidation (M))KN_		LTAQLQEM(1)KN		LTAQLQEM(60)KN	0	0	1		GOLGA1|p.L630Wfs*9|1|0.05|ENSG00000136935|chr9:124888270-124888271|-/CGCAGGACCA|frameshift_variant;GOLGA1|p.L630Vfs*13|1|0.03|ENSG00000136935|chr9:124888271-124888272|-/GGTCCTGAGCTTCGAGGGGACC|frameshift_variant;ENSG00000136935|ENST00000373555|GOLGA1	GOLGA1|p.L630Wfs*9|1|0.05|ENSG00000136935|chr9:124888270-124888271|-/CGCAGGACCA|frameshift_variant	GOLGA1|p.L630Wfs*9|1|0.05|ENSG00000136935|chr9:124888270-124888271|-/CGCAGGACCA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	596.30517578125	2	596.305538	1190.59652	-1.7027	-0.0010153	2.486	0.0014824	0.78333	0.0004671	596.3063733554482	51.837	3.4202	49.024	48.253	51.674	-2.8129					160	68	4	0	0	0	0.45953	1	3424	3424		59.931	6.9941	1	554130			35850	14344	29528	29554	39269	39269		357			0.00884832074825681
LTAQLQEMKN	10	Oxidation (M)	_LTAQLQEM(Oxidation (M))KN_		LTAQLQEM(1)KN		LTAQLQEM(74)KN	0	0	1		GOLGA1|p.L630Wfs*9|1|0.05|ENSG00000136935|chr9:124888270-124888271|-/CGCAGGACCA|frameshift_variant;GOLGA1|p.L630Vfs*13|1|0.03|ENSG00000136935|chr9:124888271-124888272|-/GGTCCTGAGCTTCGAGGGGACC|frameshift_variant;ENSG00000136935|ENST00000373555|GOLGA1	GOLGA1|p.L630Wfs*9|1|0.05|ENSG00000136935|chr9:124888270-124888271|-/CGCAGGACCA|frameshift_variant	GOLGA1|p.L630Wfs*9|1|0.05|ENSG00000136935|chr9:124888270-124888271|-/CGCAGGACCA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	596.305419921875	2	596.305538	1190.59652	0.12404	7.3968E-05	0.41042	0.00024473	0.53446	0.0003187	596.3052757852319	52.184	3.2932	48.976	48.288	51.581	-3.208					175	64	5	0	0	0	0.35539	1	3092	3092		74.165	17.731	1	2307000			35851	14344	29528	29554	39270	39270		357			0.00884832074825681
LTAQTCQKAVV	11	Unmodified	_LTAQTCQKAVV_					0	0	0			REV__nc|ENSG00000169679|O43683-2|BUB1	REV__nc|ENSG00000169679|O43683-2|BUB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.7904052734375	2	581.318448	1160.62234	1.1007	0.00063984	-1.8196	-0.0010578	-0.71897	-0.00041795	581.317033230796	107.08	0.42491	107.08	106.85	107.27	0					15	9	2	0	0	0	0.025496	1	12071	12071		32.812	0	1	792420	+		35852	21475	29529	29555	39271	39271					0.048457263170803344
LTASLPRVP	9	Unmodified	_LTASLPRVP_					0	0	0			REV__nc|ENSG00000154305|Q5JRA6-2|MIA3	REV__nc|ENSG00000154305|Q5JRA6-2|MIA3	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.2941589355469	2	477.292559	952.570566	0.39694	0.00018945	-1.4485	-0.00069137	-1.0516	-0.00050192	477.29185594906585	75.379	3.415	72.148	71.434	74.849	-3.2308					203	70	5	0	0	0	0.37135	1	6025	6025		54.776	0	1	4466900	+		35853	20376	29530	29556	39272	39272					0.09238350685518526
LTASQLEVT	9	Unmodified	_LTASQLEVT_					0	0	0		SDK1|p.G1830Rfs*24|1|0.09|ENSG00000146555|chr7:4210109-4210110|-/CAGACAATGGACTC|frameshift_variant;nc|ENSG00000146555|Q7Z5N4-3|SDK1;ENSG00000146555|ENST00000404826|SDK1;ENST00000476701.5_1_7:4169443-4308379:+|nuORF	SDK1|p.G1830Rfs*24|1|0.09|ENSG00000146555|chr7:4210109-4210110|-/CAGACAATGGACTC|frameshift_variant;ENST00000476701.5_1_7:4169443-4308379:+|nuORF	SDK1|p.G1830Rfs*24|1|0.09|ENSG00000146555|chr7:4210109-4210110|-/CAGACAATGGACTC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.24676513671875	2	481.263665	960.512776	-0.18339	-8.8259E-05	-0.2962	-0.00014255	-0.47959	-0.00023081	481.2638052789469	58.754	0.46984	58.754	58.613	59.083	0					16	11	2	0	0	0	0.027438	1	5005	5005		56.434	1.6575	1	278050			35854	5298;12470	29531	29557	39273	39273					0.030940439694290944
LTASQLEVT	9	Unmodified	_LTASQLEVT_					0	0	0		SDK1|p.G1830Rfs*24|1|0.09|ENSG00000146555|chr7:4210109-4210110|-/CAGACAATGGACTC|frameshift_variant;nc|ENSG00000146555|Q7Z5N4-3|SDK1;ENSG00000146555|ENST00000404826|SDK1;ENST00000476701.5_1_7:4169443-4308379:+|nuORF	SDK1|p.G1830Rfs*24|1|0.09|ENSG00000146555|chr7:4210109-4210110|-/CAGACAATGGACTC|frameshift_variant;ENST00000476701.5_1_7:4169443-4308379:+|nuORF	SDK1|p.G1830Rfs*24|1|0.09|ENSG00000146555|chr7:4210109-4210110|-/CAGACAATGGACTC|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	481.263665	960.512776	-1.3885	-0.00066825	-6.0381	-0.0029059	-7.4266	-0.0035742	481.25997940902903	61.249	0.31342	58.489	58.254	58.568	-2.7593	-0.1322	-0.0042594	NaN	47.96	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8283.4			35855	5298;12470	29531	29557							0.030940439694290944
LTASRRWAPR	10	Unmodified	_LTASRRWAPR_					0	0	0		ENST00000357066.7_1_19:2076883-2076922:-|nuORF	ENST00000357066.7_1_19:2076883-2076922:-|nuORF	ENST00000357066.7_1_19:2076883-2076922:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	404.9105529785156	3	405.235267	1212.68397	0.9817	0.00039782	0.34206	0.00013861	1.3238	0.00053643	405.23507425364687	58.893	0.36015	56.113	55.986	56.347	-2.7801					10	6	2	0	0	0	0.026843	1	4260	4260		38.754	11.706	1	6493.6			35856	10711	29532	29558	39274	39274					0.08613838851238143
LTASRRWAPR	10	Unmodified	_LTASRRWAPR_					0	0	0		ENST00000357066.7_1_19:2076883-2076922:-|nuORF	ENST00000357066.7_1_19:2076883-2076922:-|nuORF	ENST00000357066.7_1_19:2076883-2076922:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	405.235267	1212.68397	1.8087	0.00073296	-0.32892	-0.00013329	1.4798	0.00059967	405.2346741517872	59.72	0.24664	56.328	56.199	56.445	-3.392	0.10751	-0.0003716	NaN	38.754	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4512			35857	10711	29532	29558							0.08613838851238143
LTASSERNI	9	Unmodified	_LTASSERNI_					0	0	0			REV__ENST00000215917.11_2_22:26888454-26888715:+|nuORF	REV__ENST00000215917.11_2_22:26888454-26888715:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.77679443359375	2	495.764363	989.514173	-1.4534	-0.00072056	1.6374	0.00081178	0.184	9.1222E-05	495.7648166016169	50.431	0.88153	47.29	46.871	47.753	-3.1416					31	16	3	0	0	0	0.027462	1	2950	2950		27.882	0	1	52576	+		35858	23712	29533	29559	39275	39275					0.01899678058180143
LTASWIVIF	9	Unmodified	_LTASWIVIF_					0	0	0		ENST00000381482.7_1_20:2125208-2125481:+|nuORF	ENST00000381482.7_1_20:2125208-2125481:+|nuORF	ENST00000381482.7_1_20:2125208-2125481:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.2861328125	2	525.305136	1048.59572	-0.118	-6.1988E-05	-4.3672	-0.0022941	-4.4852	-0.0023561	525.3026914237037	104.47	1.1438	103.04	102.39	103.54	-1.4347					52	21	4	0	0	0	0.027462	1	7207	7207		3.6843	0	1	358570			35859	11166	29534	29560	39276	39276					0.07336405488081255
LTATIIHCIGV	11	Unmodified	_LTATIIHCIGV_					0	0	0		tr|A0A7D6VRS7|A0A7D6VRS7_9CLOTDUF3021domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03300PE=4SV=1	tr|A0A7D6VRS7|A0A7D6VRS7_9CLOTDUF3021domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03300PE=4SV=1	tr|A0A7D6VRS7|A0A7D6VRS7_9CLOTDUF3021domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03300PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.3123779296875	2	570.825909	1139.63727	0.96682	0.00055189	-1.7696	-0.0010102	-0.80281	-0.00045826	570.8246430912022	156.38	0.8588	156.38	155.89	156.75	0					39	16	3	0	0	0	0.025496	1	18268	18268		32.812	13.709	1	100380			35860	34953	29535	29561	39277	39277					0.07303218185074911
LTAWEKKL	8	Unmodified	_LTAWEKKL_					0	0	0		ENSG00000089163|ENST00000202967|SIRT4	ENSG00000089163|ENST00000202967|SIRT4	ENSG00000089163|ENST00000202967|SIRT4	MULTI-MSMS	OvCa9_classI_Rep3	3	494.7948913574219	2	494.794935	987.575317	-0.76721	-0.00037961	0.77266	0.00038231	0.0054508	2.697E-06	494.79526614452374	97.354	1.3125	95.595	95.053	96.365	-1.7595					53	25	3	0	0	0	0.62934	1	6445	6445		57.811	0	1	520140			35861	1813	29536	29562	39278	39278					0.08103234828286077
LTAWIQVPGP	10	Unmodified	_LTAWIQVPGP_					0	0	0		nc|ENSG00000198246|Q9BZD2-2|SLC29A3;ENSG00000198246|ENST00000373189|SLC29A3	nc|ENSG00000198246|Q9BZD2-2|SLC29A3	nc|ENSG00000198246|Q9BZD2-2|SLC29A3	MULTI-SECPEP	OvCa9_classI_Rep2	2	540.7642211914062	2	541.305667	1080.59678	-0.9302	-0.00050352	-3.7237	-0.0020157	-4.6539	-0.0025192	541.3035785760693	77.435	2.4125	75.645	75.155	77.568	-1.7894					85	46	3	0	0	0	0.026734	1	6449	6449		56.721	30.028	1	644800			35862	8801	29537	29563	39279	39279					0.059706198569983826
LTAWIQVPGP	10	Unmodified	_LTAWIQVPGP_					0	0	0		nc|ENSG00000198246|Q9BZD2-2|SLC29A3;ENSG00000198246|ENST00000373189|SLC29A3	nc|ENSG00000198246|Q9BZD2-2|SLC29A3	nc|ENSG00000198246|Q9BZD2-2|SLC29A3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	541.305667	1080.59678	-0.13673	-7.401E-05	-4.3166	-0.0023366	-4.4534	-0.0024106	541.3032137983641	77.83	1.6937	75.477	75.047	76.741	-2.3527	-0.13684	-0.00033075	NaN	39.253	74	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	926340			35863	8801	29537	29563							0.059706198569983826
LTAWLELHL	9	Unmodified	_LTAWLELHL_					0	0	0			REV__ENST00000334256.8_1_3:160233307-160233367:-|nuORF	REV__ENST00000334256.8_1_3:160233307-160233367:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	548.3135375976562	2	548.313492	1094.61243	2.6742	0.0014663	-4.3394	-0.0023794	-1.6652	-0.00091307	548.3110706164282	90.123	1.0937	90.123	89.763	90.857	0					72	26	5	0	0	0	0.40667	1	9679	9679		51.335	0	1	16494000	+		35864	24561	29538	29564	39280	39280					0.0689090637404206
LTCCVCPR	8	2 Carbamidomethyl (C)	_LTC(Carbamidomethyl (C))C(Carbamidomethyl (C))VCPR_	LTC(0.933)C(0.99)VC(0.077)PR		LTC(11)C(20)VC(-11)PR		0	2	0		nc|ENSG00000290445|Q5T2Q4|CCNYL2	nc|ENSG00000290445|Q5T2Q4|CCNYL2	nc|ENSG00000290445|Q5T2Q4|CCNYL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	504.7781677246094	2	504.724815	1007.43508	-0.27799	-0.00014031	-0.47526	-0.00023988	-0.75325	-0.00038019	504.72441588180726	56.956	2.2308	53.611	52.718	54.949	-3.3449					80	43	3	0	0	0	0.028476	1	3772	3772		85.359	35.335	3	70868			35865	15393	29539	29565	39281	39281	176;177				-0.06834331763616319
LTCIIYALV	9	Unmodified	_LTCIIYALV_					0	0	0		ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	ENSG00000218819|ENST00000405799|TDRD15	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.7837829589844	2	504.793546	1007.57254	-0.37682	-0.00019022	3.9327	0.0019852	3.5559	0.001795	504.795341006541	54.008	0.73116	54.008	53.774	54.505	0					35	17	3	0	0	0	0.027462	1	4387	4387		12.207	0	1	689090			35866	9220	29540	29566	39282	39282					0.069056433791161
LTCIWKKT	8	Unmodified	_LTCIWKKT_					0	0	0		ENST00000368576.7_1_6:116979985-116981934:-|nuORF	ENST00000368576.7_1_6:116979985-116981934:-|nuORF	ENST00000368576.7_1_6:116979985-116981934:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.7630920410156	2	496.783513	991.552473	-0.75679	-0.00037596	-1.8933	-0.00094054	-2.6501	-0.0013165	496.7821790630756	70.321	0.51085	70.321	70.13	70.641	0					17	12	2	0	0	0	0.028476	1	6773	6773		24.203	0	1	233230			35867	10876	29541	29567	39283	39283					0.05635892439147483
LTCLVPRL	8	Unmodified	_LTCLVPRL_					0	0	0			REV__PHLPP1|p.Q1514Hfs*26|1|0.18|ENSG00000081913|chr18:62978815-62978816|-/ACAT|frameshift_variant	REV__PHLPP1|p.Q1514Hfs*26|1|0.18|ENSG00000081913|chr18:62978815-62978816|-/ACAT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	457.75067138671875	2	457.778231	913.541908	1.6864	0.00077199	0.62415	0.00028572	2.3105	0.0010577	457.7782621301825	42.405	0.74034	39.695	39.324	40.065	-2.7097					22	14	2	0	0	0	0.028476	1	2317	2317		26.796	0	1	42008	+		35868	17078	29542	29568	39284	39284					0.08167909784731364
LTCPLSEQPHG	11	Unmodified	_LTCPLSEQPHG_					0	0	0			REV__PSD4|p.I884Mfs*131|1|0.06|ENSG00000125637|chr2:113198767-113198767|C/-|frameshift_variant	REV__PSD4|p.I884Mfs*131|1|0.06|ENSG00000125637|chr2:113198767-113198767|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	591.3721923828125	2	591.284605	1180.55466	-0.55091	-0.00032574	-3.854	-0.0022788	-4.4049	-0.0026046	591.2813358193969	72.624	0.24846	70.021	69.919	70.167	-2.6023					6	4	2	0	0	0	0.025257	1	3485	3485		52.937	0	1	6875.7	+		35869	18734	29543	29569	39285	39285					-0.028397236137152504
LTCSVVSMLI	10	Oxidation (M)	_LTCSVVSM(Oxidation (M))LI_		LTCSVVSM(1)LI		LTCSVVSM(61)LI	0	0	1			REV__ENST00000555638.5_1_14:67940311-67953837:-|nuORF	REV__ENST00000555638.5_1_14:67940311-67953837:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	541.2888793945312	2	541.285228	1080.5559	1.4085	0.00076238	2.6853	0.0014535	4.0937	0.0022159	541.2865232608585	113.35	1.4765	112.27	112.01	113.48	-1.0753					64	28	3	0	0	0	0.45225	1	8330	8330		60.972	8.0352	1	257830	+		35870	27545	29544	29570	39286	39286		610			0.01884774430845937
LTCTPWMMVV	10	Carbamidomethyl (C),Oxidation (M)	_LTC(Carbamidomethyl (C))TPWMM(Oxidation (M))VV_	LTC(1)TPWMMVV	LTCTPWM(0.165)M(0.835)VV	LTC(49)TPWMMVV	LTCTPWM(-7)M(7)VV	0	1	1			REV__ENST00000470383.1_1_1:24124993-24125323:-|nuORF	REV__ENST00000470383.1_1_1:24124993-24125323:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	627.2915649414062	2	627.289988	1252.56542	-1.4833	-0.00093048	3.5269	0.0022124	2.0436	0.0012819	627.2920289326966	116.01	1.534	115.89	115.44	116.97	-0.11777					74	30	4	0	0	0	0.53885	1	11070	11070		49.442	9.3834	2	131560	+		35871	26260	29545	29571	39287	39287	324	587;588			-0.050757805552620994
LTCTPWMMVV	10	Carbamidomethyl (C),Oxidation (M)	_LTC(Carbamidomethyl (C))TPWM(Oxidation (M))MVV_	LTC(1)TPWMMVV	LTCTPWM(0.5)M(0.5)VV	LTC(44)TPWMMVV	LTCTPWM(0)M(0)VV	0	1	1			REV__ENST00000470383.1_1_1:24124993-24125323:-|nuORF	REV__ENST00000470383.1_1_1:24124993-24125323:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	627.2899780273438	2	627.289988	1252.56542	-0.24332	-0.00015263	2.3473	0.0014724	2.104	0.0013198	627.2913318726058	116.94	1.872	115.57	114.89	116.77	-1.3645					78	35	3	0	0	0	0.58282	1	10956	10956		44.117	8.4985	2	271510	+		35872	26260	29545	29571	39288	39288	324	587;588			-0.050757805552620994
LTDCGRLRPGR	11	Unmodified	_LTDCGRLRPGR_					0	0	0		ENST00000394479.3_1_2:61108905-61118827:+|nuORF	ENST00000394479.3_1_2:61108905-61118827:+|nuORF	ENST00000394479.3_1_2:61108905-61118827:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	622.3374633789062	2	622.338038	1242.66152	-4.3656	-0.0027169	1.9177	0.0011935	-2.4479	-0.0015234	622.3390875012716	154.54	0.85817	153.09	152.8	153.66	-1.4516					54	19	3	0	0	0	0.71191	1	15279	15279		25.574	5.5773	1	149970			35873	11266	29546	29572	39289	39289					0.0498987139133078
LTDDMVLQL	9	Unmodified	_LTDDMVLQL_					0	0	0		ENSG00000181350|ENST00000470794|LRRC75A	ENSG00000181350|ENST00000470794|LRRC75A	ENSG00000181350|ENST00000470794|LRRC75A	MULTI-MSMS	OvCa9_classI_Rep2	2	524.2711791992188	2	524.273175	1046.5318	-1.2665	-0.00066397	-2.1182	-0.0011105	-3.3847	-0.0017745	524.2719353297791	119.84	3.5537	119.67	119.05	122.61	-0.17138					188	71	5	0	0	0	0.079296	1	11548	11548		102.77	1.1726	1	902400			35874	7927	29547	29573	39290	39290					0.010392572688488144
LTDDMVLQL	9	Unmodified	_LTDDMVLQL_					0	0	0		ENSG00000181350|ENST00000470794|LRRC75A	ENSG00000181350|ENST00000470794|LRRC75A	ENSG00000181350|ENST00000470794|LRRC75A	MULTI-MSMS	OvCa9_classI_Rep3	3	524.2709350585938	2	524.273175	1046.5318	0.85689	0.00044924	-4.4765	-0.0023469	-3.6196	-0.0018977	524.2706948277186	120.46	3.5918	119.43	118.68	122.27	-1.0271					167	69	5	0	0	0	0.44568	1	9254	9254		47.657	10.498	1	1392700			35875	7927	29547	29573	39291	39291					0.010392572688488144
LTDEFYVLR	9	Unmodified	_LTDEFYVLR_					0	0	0		ENSG00000171773|ENST00000301944|NXNL1	ENSG00000171773|ENST00000301944|NXNL1	ENSG00000171773|ENST00000301944|NXNL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.3056030273438	2	578.305864	1154.59717	-1.4446	-0.0008354	1.655	0.00095708	0.2104	0.00012167	578.3066652659459	124.27	1.3391	122.88	122.57	123.91	-1.3908					63	25	3	0	0	0	0.27001	1	11791	11791		66.429	13.078	1	138440			35876	7232	29548	29574	39292	39292					0.026059947861767796
LTDEILSKQTL	11	Unmodified	_LTDEILSKQTL_					0	0	0		tr|A0A553SHW6|A0A553SHW6_NIACISigma-70familyRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=CEQ21_13710PE=3SV=1	tr|A0A553SHW6|A0A553SHW6_NIACISigma-70familyRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=CEQ21_13710PE=3SV=1	tr|A0A553SHW6|A0A553SHW6_NIACISigma-70familyRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=CEQ21_13710PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	420.2363586425781	3	420.906371	1259.69728	-0.34886	-0.00014684	2.2869	0.00096258	1.9381	0.00081574	420.9076148558373	91.823	0.55814	89.799	89.483	90.041	-2.0241					24	10	3	0	0	0	0.025508	1	5802	5802		34.087	0	1	69200			35877	33321	29549	29575	39293	39293					0.07782187329326007
LTDELKKVQ	9	Unmodified	_LTDELKKVQ_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.311767578125	2	537.313689	1072.61282	0.30648	0.00016467	-3.4912	-0.0018759	-3.1847	-0.0017112	537.311277533659	96.475	0.46004	94.647	94.471	94.931	-1.8286					14	8	2	0	0	0	0.027462	1	6355	6355		23.042	3.6825	1	69263	+		35878	18991	29550	29576	39294	39294					0.07942281303235177
LTDEMITK	8	Unmodified	_LTDEMITK_					0	0	0		tr|A0A553SK14|A0A553SK14_NIACIPhenylalanine--tRNAligasebetasubunitOS=NialliacirculansOX=1397GN=pheTPE=3SV=1	tr|A0A553SK14|A0A553SK14_NIACIPhenylalanine--tRNAligasebetasubunitOS=NialliacirculansOX=1397GN=pheTPE=3SV=1	tr|A0A553SK14|A0A553SK14_NIACIPhenylalanine--tRNAligasebetasubunitOS=NialliacirculansOX=1397GN=pheTPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	475.74713134765625	2	475.746793	949.479033	1.7149	0.00081584	-2.8103	-0.001337	-1.0955	-0.00052116	475.7454050134716	98.345	1.081	98.345	97.995	99.076	0					50	25	3	0	0	0	0.53252	1	10856	10856		74.255	6.9278	1	1157300			35879	33567	29551	29577	39295	39295					0.002272992060056822
LTDFLTQAE	9	Unmodified	_LTDFLTQAE_					0	0	0			REV__nc|ENSG00000183914|Q9P225-2|DNAH2	REV__nc|ENSG00000183914|Q9P225-2|DNAH2	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.7786254882812	2	519.261122	1036.50769	1.7099	0.00088791	1.7417	0.00090442	3.4517	0.0017923	519.2618029542839	95.291	0.58151	95.291	95.033	95.615	0					19	13	2	0	0	0	0.027462	1	10433	10433		53.351	24.202	1	509190	+		35880	22394	29552	29578	39296	39296					-0.00910259893203147
LTDFNNEDP	9	Unmodified	_LTDFNNEDP_					0	0	0			REV__ENST00000397656.8_1_12:111066004-111085694:+|nuORF;REV__ENST00000478122.6_1_12:111052207-111066834:+|nuORF	REV__ENST00000397656.8_1_12:111066004-111085694:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.31884765625	2	532.730186	1063.44582	-2.2423	-0.0011945	1.4647	0.00078027	-0.77765	-0.00041428	532.7310487218776	72.43	0.34239	69.034	68.862	69.204	-3.3961					10	6	2	0	0	0	0.027403	1	5552	5552		79.713	28.52	1	27339	+		35881	23190;26404	29553	29579	39297	39297					-0.08336611312347486
LTDHGALLFT	10	Unmodified	_LTDHGALLFT_					0	0	0			REV__nc|ENSG00000186377|Q8N118-3|CYP4X1	REV__nc|ENSG00000186377|Q8N118-3|CYP4X1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.7722778320312	2	544.292756	1086.57096	-1.5096	-0.00082165	0.98408	0.00053563	-0.5255	-0.00028602	544.293658186315	42.72	1.3472	39.718	39.193	40.541	-3.0027					40	25	3	0	0	0	0.026802	1	2029	2029		19.997	4.355	1	31066	+		35882	22579	29554	29580	39298	39298					0.031137256147076187
LTDIHCLAE	9	Unmodified	_LTDIHCLAE_					0	0	0			REV__tr|A0A553SH36|A0A553SH36_NIACIuroporphyrinogen-IIIC-methyltransferaseOS=NialliacirculansOX=1397GN=cobAPE=3SV=1	REV__tr|A0A553SH36|A0A553SH36_NIACIuroporphyrinogen-IIIC-methyltransferaseOS=NialliacirculansOX=1397GN=cobAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.3019714355469	2	507.749867	1013.48518	0.093582	4.7516E-05	0.054839	2.7845E-05	0.14842	7.5361E-05	507.7497534784636	80.156	2.6775	78.461	77.767	80.444	-1.6951					67	52	2	0	0	0	0.02741	1	6945	6945		19.997	0	1	20805	+		35883	29769	29555	29581	39299	39299					-0.02102182562452981
LTDIPRVGE	9	Unmodified	_LTDIPRVGE_					0	0	0			REV__tr|A0A553SGH9|A0A553SGH9_NIACIGTP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10910PE=4SV=1	REV__tr|A0A553SGH9|A0A553SGH9_NIACIGTP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10910PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.3432312011719	2	500.277106	998.53966	1.5329	0.00076686	-0.68659	-0.00034348	0.84628	0.00042338	500.27677926403817	138.27	0.62601	138.27	137.97	138.59	0					20	12	2	0	0	0	0.027462	1	16101	16101		10.265	0	1	55779	+		35884	29701	29556	29582	39300	39300					0.040331525806209356
LTDIWKLSL	9	Unmodified	_LTDIWKLSL_					0	0	0			REV__tr|A0A553SJN9|A0A553SJN9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_17085PE=4SV=1	REV__tr|A0A553SJN9|A0A553SJN9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_17085PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	544.819580078125	2	544.82115	1087.62775	1.5141	0.00082492	-2.7662	-0.0015071	-1.2521	-0.00068214	544.819169146929	88.915	1.4301	87.547	87.086	88.516	-1.3676					102	28	5	0	0	0	0.37135	1	7819	7819		54.776	1.8396	1	381970	+		35885	30022	29557	29583	39301	39301					0.08743773171249813
LTDLHQSLE	9	Unmodified	_LTDLHQSLE_					0	0	0			REV__nc|ENSG00000288591|Q9Y2I9-3|TBC1D30	REV__nc|ENSG00000288591|Q9Y2I9-3|TBC1D30	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.7868041992188	2	528.272021	1054.52949	-1.498	-0.00079134	1.7286	0.00091319	0.23066	0.00012185	528.2729901636085	69.754	0.97408	66.273	65.96	66.934	-3.4812					42	19	3	0	0	0	0.027446	1	5224	5224		51.193	5.2204	1	331170	+		35886	18036	29558	29584	39302	39302					0.0044054485538254085
LTDLNIKGR	9	Unmodified	_LTDLNIKGR_					0	0	0		sp|P06726|PP71_HCMVAProteinpp71OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL82PE=1SV=2;sp|F5HBC6|PP71_HCMVMProteinpp71OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL82PE=3SV=1	sp|P06726|PP71_HCMVAProteinpp71OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL82PE=1SV=2	sp|P06726|PP71_HCMVAProteinpp71OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL82PE=1SV=2	MULTI-SECPEP	OvCa9_classI_Rep2	2	514.7921142578125	2	515.306198	1028.59784	-1.114	-0.00057408	4.3239	0.0022281	3.2099	0.0016541	515.3083312380841	117.72	0.99258	117.58	117.24	118.23	-0.14755					35	19	3	0	0	0	0.027441	1	11335	11335		58.782	18.209	1	47774			35887	32853	29559	29585	39303	39303					0.08468834225891442
LTDLRFDNI	9	Unmodified	_LTDLRFDNI_					0	0	0		ENSG00000149635|ENST00000279028|OCSTAMP	ENSG00000149635|ENST00000279028|OCSTAMP	ENSG00000149635|ENST00000279028|OCSTAMP	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.7964477539062	2	553.795663	1105.57677	-0.18928	-0.00010482	-0.1187	-6.5736E-05	-0.30798	-0.00017056	553.795608559581	76.986	1.9746	74.17	73.767	75.742	-2.8165					98	40	4	0	0	0	0.29519	1	6209	6209		63.534	10.597	1	967160			35888	5482	29560	29586	39304	39304					0.028208241263882883
LTDPDIHVL	9	Unmodified	_LTDPDIHVL_					0	0	0		nc|ENSG00000091157|Q9Y4E6-2|WDR7;ENSG00000091157|ENST00000254442|WDR7	nc|ENSG00000091157|Q9Y4E6-2|WDR7	nc|ENSG00000091157|Q9Y4E6-2|WDR7	MULTI-MSMS	OvCa99_classI_Rep5	1	511.7813720703125	2	511.779482	1021.54441	3.4154	0.0017479	-2.1143	-0.0010821	1.3011	0.00066589	511.7781328841844	97.49	0.73206	97.49	97.18	97.912	0					37	16	3	0	0	0	0.079296	1	10715	10715		102.77	25.927	1	1584700			35889	1867	29561	29587	39305	39305					0.034500367233818
LTDPRTTFV	9	Unmodified	_LTDPRTTFV_					0	0	0			REV__tr|A0A553SJU3|A0A553SJU3_NIACILeucine--tRNAligaseOS=NialliacirculansOX=1397GN=leuSPE=3SV=1	REV__tr|A0A553SJU3|A0A553SJU3_NIACILeucine--tRNAligaseOS=NialliacirculansOX=1397GN=leuSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	525.2841186523438	2	525.284931	1048.55531	0.26976	0.0001417	-0.89426	-0.00046974	-0.6245	-0.00032804	525.2844511785617	113.7	2.1235	113.58	113.02	115.14	-0.11777					119	42	4	0	0	0	0.38969	1	10803	10803		52.937	1.6012	1	925990	+		35890	30044	29562	29588	39306	39306					0.032974390976505674
LTDRVSLLL	9	Unmodified	_LTDRVSLLL_					0	0	0		ENST00000491818.5_1_3:179040886-179043089:+|nuORF	ENST00000491818.5_1_3:179040886-179043089:+|nuORF	ENST00000491818.5_1_3:179040886-179043089:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.791748046875	2	515.318774	1028.623	1.8083	0.00093186	0.1985	0.00010229	2.0068	0.0010341	515.3183165481535	121.89	1.2579	120.86	120.59	121.85	-1.0286					40	23	2	0	0	0	0.027462	1	9319	9319		34.173	0	1	29595			35891	12717	29563	29589	39307	39307					0.1098288902846889
LTDTSIGAGM	10	Unmodified	_LTDTSIGAGM_					0	0	0			REV__tr|A0A553SNX6|A0A553SNX6_NIACIMinD/ParAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25400PE=4SV=1	REV__tr|A0A553SNX6|A0A553SNX6_NIACIMinD/ParAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25400PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.2943420410156	2	483.23405	964.453547	1.1728	0.00056676	-1.2124	-0.0005859	-0.039598	-1.9135E-05	483.23332166294387	86.353	1.5807	83.722	82.863	84.444	-2.6314					44	31	2	0	0	0	0.026939	1	7232	7232		11.511	0	1	47260	+		35892	30471	29564	29590	39308	39308					-0.03010175316387631
LTEADPDPN	9	Unmodified	_LTEADPDPN_					0	0	0			REV__nc|ENSG00000276850|P13928-2|ANXA8	REV__nc|ENSG00000276850|P13928-2|ANXA8	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.8141174316406	2	486.219454	970.424355	1.2318	0.00059891	3.4371	0.0016712	4.6688	0.0022701	486.22106056160516	149.76	0.44525	149.76	149.55	149.99	0					19	8	3	0	0	0	0.027461	1	17554	17554		49.442	13.823	1	63731	+		35893	23580	29565	29591	39309	39309					-0.06203996341048423
LTEAPPHG	8	Unmodified	_LTEAPPHG_					0	0	0			REV__ENST00000473735.1_1_10:135216152-135233666:+|nuORF	REV__ENST00000473735.1_1_10:135216152-135233666:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	411.2149658203125	2	411.211235	820.407917	3.4844	0.0014328	4.2951	0.0017662	7.7795	0.003199	411.2128604943537	91.633	0.46513	91.633	91.372	91.837	0					23	10	3	0	0	0	0.72922	1	9884	9884		37.028	2.8559	1	723660	+		35894	20128	29566	29592	39310	39310					-0.009470327164763148
LTEATLNPK	9	Unmodified	_LTEATLNPK_					0	0	0		ENSG00000196604|ENST00000409914|POTEF	ENSG00000196604|ENST00000409914|POTEF	ENSG00000196604|ENST00000409914|POTEF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.3244934082031	2	493.779482	985.544411	-0.34304	-0.00016939	2.1121	0.0010429	1.7691	0.00087354	493.7796583804394	79.87	1.2073	77.119	76.466	77.673	-2.7514					30	24	2	0	0	0	0.027448	1	6445	6445		27.882	0	1	87095			35895	8634	29567	29593	39311	39311					0.05106036723384477
LTECHDIRQG	10	Unmodified	_LTECHDIRQG_					0	0	0		ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	ENSG00000142449|ENST00000600128|FBN3	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.2684936523438	2	586.279854	1170.54516	0.68431	0.0004012	-1.4914	-0.00087435	-0.80705	-0.00047315	586.2789244226443	139.91	0.7903	139.91	139.7	140.49	0					25	16	2	0	0	0	0.027088	1	16328	16328		9.1829	0	1	95419			35896	4972	29568	29594	39312	39312					-0.03329491899239656
LTEDKKIL	8	Unmodified	_LTEDKKIL_					0	0	0		ENSG00000166948|ENST00000202625|TGM6;nc|ENSG00000166948|O95932-2|TGM6	ENSG00000166948|ENST00000202625|TGM6	ENSG00000166948|ENST00000202625|TGM6	MULTI-MSMS	OvCa9_classI_Rep3	3	480.2922668457031	2	480.292225	958.569897	1.9432	0.00093331	-2.2557	-0.0010834	-0.31248	-0.00015008	480.29095784813535	111.84	1.4316	110.74	110.2	111.63	-1.1038					69	28	4	0	0	0	0.59148	1	8148	8148		65.803	2.4969	1	400640			35897	6740	29569	29595	39313	39313					0.08895511245816579
LTEEEAKHC	9	Unmodified	_LTEEEAKHC_					0	0	0		ENSG00000039537|ENST00000337836|C6	ENSG00000039537|ENST00000337836|C6	ENSG00000039537|ENST00000337836|C6	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.7984008789062	2	530.242406	1058.47026	-0.90773	-0.00048132	-3.2222	-0.0017085	-4.1299	-0.0021899	530.2405882112433	63.834	0.20399	63.834	63.69	63.894	0					6	4	2	0	0	0	0.027462	1	5768	5768		32.812	2.9709	1	134270			35898	1106	29570	29596	39314	39314					-0.05663674430456922
LTEEFVEK	8	Unmodified	_LTEEFVEK_					0	0	0		ENSG00000107882|ENST00000369902|SUFU	ENSG00000107882|ENST00000369902|SUFU	ENSG00000107882|ENST00000369902|SUFU	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.73681640625	2	497.758215	993.501877	-2.5467	-0.0012676	-0.090088	-4.4842E-05	-2.6368	-0.0013125	497.7578220382544	36.961	0.88665	34.251	34.09	34.977	-2.7097					26	17	3	0	0	0	0.028476	1	1621	1621		23.042	0	1	42742			35899	2625	29571	29597	39315	39315					0.00486641595148285
LTEGNQHL	8	Unmodified	_LTEGNQHL_					0	0	0			REV__ENST00000547636.1_1_12:44915767-44917277:-|nuORF	REV__ENST00000547636.1_1_12:44915767-44917277:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	455.7584228515625	2	456.232699	910.450845	-0.31834	-0.00014524	-0.26046	-0.00011883	-0.5788	-0.00026407	456.23252540021565	42.539	0.68423	42.539	42.329	43.014	0					35	15	3	0	0	0	0.028476	1	2759	2759		31.955	5.1588	1	761100	+		35900	22443	29572	29598	39316	39316					-0.007962626590369837
LTEIKPKKGGL	11	Unmodified	_LTEIKPKKGGL_					0	0	0			REV__tr|A0A7D6VXN8|A0A7D6VXN8_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12720PE=4SV=1	REV__tr|A0A7D6VXN8|A0A7D6VXN8_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12720PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.271728515625	2	592.374081	1182.73361	2.0908	0.0012385	-0.12033	-7.1278E-05	1.9705	0.0011673	592.3738875748098	102.14	0.72408	102.14	101.91	102.63	0					45	16	4	0	0	0	0.025315	1	11399	11399		30.318	0	1	1854700	+		35901	31782	29573	29599	39317	39317					0.14955109016705137
LTEKLQRHTQ	10	Unmodified	_LTEKLQRHTQ_					0	0	0			REV__ENSG00000134516|ENST00000520908|DOCK2	REV__ENSG00000134516|ENST00000520908|DOCK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.1976318359375	3	418.570204	1252.68878	0.82404	0.00034492	3.3066	0.001384	4.1306	0.001729	418.5716243285377	46.038	0.82493	46.038	45.373	46.198	0					29	18	3	0	0	0	0.027089	1	3154	3154		9.6461	6.4348	1	158080	+		35902	19210	29574	29600	39318	39318					0.07254678203366893
LTELAKHRL	9	Unmodified	_LTELAKHRL_					0	0	0			REV__ENSG00000187210|ENST00000376730|GCNT1	REV__ENSG00000187210|ENST00000376730|GCNT1	MULTI-MSMS	OvCa9_classI_Rep3	3	540.8312377929688	2	540.82984	1079.64513	2.013	0.0010887	0.75549	0.00040859	2.7684	0.0014973	540.8302826822948	124.41	3.5435	123.37	123.03	126.57	-1.0377					194	67	5	0	0	0	0.42676	2	9713	9713;9775		49.442	1.1189	1	8697600	+		35903	22635	29575	29601	39319;39320	39319					0.10849113496897189
LTELAVQVN	9	Unmodified	_LTELAVQVN_					0	0	0			REV__ENSG00000118156|ENST00000391901|ZNF541	REV__ENSG00000118156|ENST00000391901|ZNF541	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3243713378906	2	493.779482	985.544411	-0.11029	-5.4459E-05	0.64687	0.00031941	0.53658	0.00026495	493.7797454830453	79.264	1.0012	76.925	76.562	77.563	-2.3399					28	19	3	0	0	0	0.027441	1	4319	4319		45.952	0	1	101030	+		35904	18380	29576	29602	39321	39321					0.05106036723384477
LTELLSEEL	9	Unmodified	_LTELLSEEL_					0	0	0			REV__ENSG00000187240|ENST00000375735|DYNC2H1	REV__ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.8192749023438	2	523.78443	1045.55431	0.63551	0.00033287	0.21233	0.00011122	0.84784	0.00044408	523.7840742618592	67.96	0.63223	64.47	64.284	64.916	-3.4902					18	12	2	0	0	0	0.027462	1	5038	5038		27.882	5.9224	1	104930	+		35905	22636	29577	29603	39322	39322					0.033351799380852754
LTELREPK	8	Unmodified	_LTELREPK_					0	0	0			REV__nc|ENSG00000153531|Q8NDY3-2|ADPRHL1	REV__nc|ENSG00000153531|Q8NDY3-2|ADPRHL1	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.3222961425781	2	493.287474	984.560395	0.7571	0.00037347	-1.2506	-0.0006169	-0.4935	-0.00024344	493.2862305365774	79.48	0.93172	77.74	77.196	78.128	-1.7398					28	17	2	0	0	0	0.028476	1	6645	6645		68.787	0	1	30973	+		35906	20342	29578	29604	39323	39323					0.06749742960278127
LTELSMHW	8	Unmodified	_LTELSMHW_					0	0	0		nc|ENSG00000211950|A0A0C4DH33|IGHV1-24	nc|ENSG00000211950|A0A0C4DH33|IGHV1-24	nc|ENSG00000211950|A0A0C4DH33|IGHV1-24	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.2662658691406	2	508.747127	1015.4797	2.5029	0.0012733	-0.049515	-2.5191E-05	2.4534	0.0012482	508.74679936487047	95.972	0.50984	95.972	95.743	96.253	0					17	11	2	0	0	0	0.028476	1	10507	10507		20.482	0	1	139940			35907	15301	29579	29605	39324	39324					-0.02741861354274988
LTELSMQDE	9	Unmodified	_LTELSMQDE_					0	0	0		ENSG00000134809|ENST00000257245|TIMM10	ENSG00000134809|ENST00000257245|TIMM10	ENSG00000134809|ENST00000257245|TIMM10	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.2449340820312	2	533.242072	1064.46959	2.761	0.0014723	3.6989	0.0019724	6.4599	0.0034447	533.2439493941978	132.66	1.6161	131.16	130.85	132.46	-1.5015					54	32	2	0	0	0	0.48324	1	12772	12772		44.117	0	1	77504			35908	4331	29580	29606	39325	39325					-0.06006513870147501
LTEPAPHLHP	10	Unmodified	_LTEPAPHLHP_					0	0	0			REV__ENST00000491477.5_1_6:30312945-30314275:+|nuORF	REV__ENST00000491477.5_1_6:30312945-30314275:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	556.2976684570312	2	556.298373	1110.58219	0.76978	0.00042823	-2.6077	-0.0014507	-1.838	-0.0010225	556.2966526456938	160.9	2.3694	160.9	159.86	162.23	0					95	46	3	0	0	0	0.49049	1	18812	18812		55.504	6.0627	1	122560	+		35909	26675	29581	29607	39326	39326					0.031325477088330445
LTEPPMNPTK	10	Oxidation (M)	_LTEPPM(Oxidation (M))NPTK_		LTEPPM(1)NPTK		LTEPPM(55)NPTK	0	0	1		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2;ACTR2|p.L303Gfs*32|1|0.04|ENSG00000138071|chr2:65265066-65265067|-/TGGAGTGCAGTGGTGCAGTCTCG|frameshift_variant;ENST00000409926.2_1_22:25083141-25083279:+|nuORF	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	OvCa99_classI_Rep5	1	572.2896728515625	2	572.289356	1142.56416	1.1395	0.00065213	-2.273	-0.0013008	-1.1334	-0.00064866	572.2880607868642	143.78	0.939	143.78	143.51	144.45	0					37	18	3	0	0	0	0.49558	1	16798	16798		54.776	7.119	1	318170			35910	4652	29582	29608	39327	39327		148			-0.001419553281948538
LTEPRPLHK	9	Unmodified	_LTEPRPLHK_					0	0	0			REV__nc|ENSG00000185760|Q9NR82-2|KCNQ5	REV__nc|ENSG00000185760|Q9NR82-2|KCNQ5	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.8236083984375	2	545.822015	1089.62948	0.91688	0.00050046	-1.874	-0.0010229	-0.95709	-0.0005224	545.8213801996834	85.8	1.7749	83.154	82.755	84.53	-2.6463					94	35	6	0	0	0	0.48324	1	7219	7219		44.117	4.0586	1	631300	+		35911	22528	29583	29609	39328	39328					0.0882482697982141
LTERFYLL	8	Unmodified	_LTERFYLL_					0	0	0			REV__ENST00000489412.1_1_6:145956297-145956603:-|nuORF	REV__ENST00000489412.1_1_6:145956297-145956603:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	527.2818603515625	2	527.800217	1053.58588	-1.2956	-0.0006838	-0.70674	-0.00037302	-2.0023	-0.0010568	527.7997656483082	77.2	1.1268	74.829	74.4	75.527	-2.3715					55	21	3	0	0	0	0.028476	1	3981	3981		42.474	0	1	141590	+		35912	26639	29584	29610	39329	39329					0.06123217482695509
LTERLTSKLST	11	Unmodified	_LTERLTSKLST_					0	0	0		nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-SECPEP	OvCa9_classI_Rep2	2	416.85296630859375	3	416.910115	1247.70852	0.18605	7.7564E-05	-2.6072	-0.001087	-2.4211	-0.0010094	416.90903015736615	67.141	1.1874	64.48	64.099	65.286	-2.661					34	23	2	0	0	0	0.025863	1	5201	5201		31.068	10.231	1	53838			35913	7732	29585	29611	39330	39330					0.0945700942345411
LTERLTSKLST	11	Unmodified	_LTERLTSKLST_					0	0	0		nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-MATCH	OvCa9_classI_Rep3	3		3	416.910115	1247.70852	1.6199	0.00067534	-3.2642	-0.0013609	-1.6444	-0.00068555	416.90862922679554	67.644	1.349	64.757	64.391	65.74	-2.8873	0.075868	-0.00024898	NaN	31.068	51	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93724			35914	7732	29585	29611							0.0945700942345411
LTERLTSKLST	11	Unmodified	_LTERLTSKLST_					0	0	0		nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	nc|ENSG00000178104|Q5VU43-3|PDE4DIP	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	416.910115	1247.70852	0.58463	0.00024374	-2.9705	-0.0012384	-2.3859	-0.00099469	416.9090275122443	68.297	1.0297	64.806	64.526	65.556	-3.4902	0.12529	0.00011838	NaN	31.068	36	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48682			35915	7732	29585	29611							0.0945700942345411
LTERMNKY	8	Unmodified	_LTERMNKY_					0	0	0			REV__ENST00000428210.5_1_2:61719906-61720176:-|nuORF	REV__ENST00000428210.5_1_2:61719906-61720176:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	527.2818603515625	2	527.771134	1053.52771	-1.2168	-0.00064218	2.0326	0.0010727	0.81581	0.00043056	527.7720286842552	76.583	0.787	74.211	73.98	74.767	-2.3715					31	14	3	0	0	0	0.028476	1	3981	3981		40.573	0	1	84968	+		35916	17091	29586	29612	39331	39331					0.003092125657985889
LTETIMFDD	9	Unmodified	_LTETIMFDD_					0	0	0		ENSG00000163283|ENST00000392027|ALPP;ENSG00000163286|ENST00000295453|ALPG	ENSG00000163283|ENST00000392027|ALPP	ENSG00000163283|ENST00000392027|ALPP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.3077392578125	2	542.74699	1083.47943	-0.81201	-0.00044072	4.0849	0.0022171	3.2729	0.0017764	542.7490722753175	56.139	1.1123	52.845	52.617	53.73	-3.2944					46	21	3	0	0	0	0.027462	1	3629	3629		24.203	0	1	272860			35917	6283	29587	29613	39332	39332					-0.058973258647938565
LTEVVHLCCE	10	Unmodified	_LTEVVHLCCE_					0	0	0		nc|ENSG00000197429|Q9Y573-2|IPP;ENSG00000197429|ENST00000396478|IPP	nc|ENSG00000197429|Q9Y573-2|IPP	nc|ENSG00000197429|Q9Y573-2|IPP	MULTI-MSMS	OvCa99_classI_Rep5	1	573.2720947265625	2	573.270109	1144.52567	1.7426	0.000999	0.25958	0.00014881	2.0022	0.0011478	573.2701674967453	117.33	2.4287	117.33	116.95	119.38	0					127	51	5	0	0	0	0.28845	1	13471	13471		82.241	8.2658	1	2599700			35918	8711	29588	29614	39333	39333					-0.0408158423435907
LTEYKVRET	9	Unmodified	_LTEYKVRET_					0	0	0			REV__DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant	REV__DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	569.8348999023438	2	569.808771	1137.60299	-0.90264	-0.00051433	-0.19427	-0.0001107	-1.0969	-0.00062503	570.309236337773	100.22	0.51453	97.893	97.717	98.231	-2.3253					14	9	2	0	0	0	0.027462	1	8966	8966		29.15	1.2673	1	39720	+		35919	16314	29589	29615	39334	39334					0.039690932978373894
LTFDEPFYN	9	Unmodified	_LTFDEPFYN_					0	0	0		FAT3|p.R2620Pfs*14|1|0.65|ENSG00000165323|chr11:92801322-92801322|G/-|frameshift_variant;FAT3|p.L1330Cfs*14|1|0.06|ENSG00000165323|chr11:92790044-92790044|C/-|frameshift_variant;FAT3|p.D1442Qfs*16|1|0.03|ENSG00000165323|chr11:92792928-92792929|-/CAAAT|frameshift_variant;FAT3|p.P2978Rfs*15|1|0.06|ENSG00000165323|chr11:92809977-92809978|-/GTTGCATCCTACAAGGAAGCACTGA|frameshift_variant;FAT3|p.F3345Lfs*103|1|0.08|ENSG00000165323|chr11:92840677-92840678|-/AGTTGCCAGGATGTCCCCCCAAAAAA|frameshift_variant;FAT3|p.L3490Wfs*79|1|0.04|ENSG00000165323|chr11:92844285-92844285|T/-|frameshift_variant;FAT3|p.F3624Pfs*89|1|0.54|ENSG00000165323|chr11:92844685-92844686|-/CC|frameshift_variant;FAT3|p.V3625Sfs*97|1|0.52|ENSG00000165323|chr11:92844687-92844688|-/TCTCCATGAATTTTACATTCCAGCATCTC|frameshift_variant;nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3	FAT3|p.R2620Pfs*14|1|0.65|ENSG00000165323|chr11:92801322-92801322|G/-|frameshift_variant;FAT3|p.F3345Lfs*103|1|0.08|ENSG00000165323|chr11:92840677-92840678|-/AGTTGCCAGGATGTCCCCCCAAAAAA|frameshift_variant	FAT3|p.F3345Lfs*103|1|0.08|ENSG00000165323|chr11:92840677-92840678|-/AGTTGCCAGGATGTCCCCCCAAAAAA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.2704467773438	2	573.261122	1144.50769	0.88818	0.00050916	-3.1458	-0.0018034	-2.2576	-0.0012942	573.2594160927923	139.19	0.85129	139.19	138.93	139.78	0					44	17	3	0	0	0	0.027462	1	16231	16231		30.504	0	1	140960			35920	14324;6551	29590	29616	39335	39335					-0.05878259893165705
LTFFLYSGY	9	Unmodified	_LTFFLYSGY_					0	0	0		ENST00000494000.1_1_3:172048292-172052928:+|nuORF	ENST00000494000.1_1_3:172048292-172052928:+|nuORF	ENST00000494000.1_1_3:172048292-172052928:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.8308715820312	2	555.778951	1109.54335	0.047147	2.6204E-05	3.6905	0.0020511	3.7376	0.0020773	555.7803510136246	77.005	1.1602	74.188	73.907	75.067	-2.8165					32	23	2	0	0	0	0.027462	1	6179	6179		24.203	0	1	53673			35921	12747	29591	29617	39336	39336					-0.007041776455253057
LTFGFGQS	8	Unmodified	_LTFGFGQS_					0	0	0			REV__ARHGAP21|p.S209Yfs*11|1|0.06|ENSG00000107863|chr10:24621269-24621270|-/T|frameshift_variant	REV__ARHGAP21|p.S209Yfs*11|1|0.06|ENSG00000107863|chr10:24621269-24621270|-/T|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	428.71502685546875	2	428.713611	855.412668	2.4092	0.0010328	0.13225	5.6696E-05	2.5414	0.0010895	428.71348319252246	82.756	0.51291	82.756	82.522	83.035	0					25	11	3	0	0	0	0.66992	1	8587	8587		49.442	1.5259	1	951150	+		35922	15653	29592	29618	39337	39337					-0.02082148573708764
LTFGFGQS	8	Unmodified	_LTFGFGQS_					0	0	0			REV__ARHGAP21|p.S209Yfs*11|1|0.06|ENSG00000107863|chr10:24621269-24621270|-/T|frameshift_variant	REV__ARHGAP21|p.S209Yfs*11|1|0.06|ENSG00000107863|chr10:24621269-24621270|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	428.7147521972656	2	428.713611	855.412668	1.7	0.00072883	-2.9882	-0.0012811	-1.2881	-0.00055224	428.71218781086714	86.449	1.5426	83.822	83.562	85.105	-2.6269					64	30	3	0	0	0	0.56195	1	7317	7317		71.296	0	1	411090	+		35923	15653	29592	29618	39338	39338					-0.02082148573708764
LTFGFGQS	8	Unmodified	_LTFGFGQS_					0	0	0			REV__ARHGAP21|p.S209Yfs*11|1|0.06|ENSG00000107863|chr10:24621269-24621270|-/T|frameshift_variant	REV__ARHGAP21|p.S209Yfs*11|1|0.06|ENSG00000107863|chr10:24621269-24621270|-/T|frameshift_variant	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	428.713611	855.412668	2.4092	0.0010328	0.13225	5.6696E-05	2.5414	0.0010895	428.71348319252246	82.756	0.51291	82.756	82.522	83.035	0	0	0	NaN	49.442	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	951150	+		35924	15653	29592	29618							-0.02082148573708764
LTFGFGQS	8	Unmodified	_LTFGFGQS_					0	0	0			REV__ARHGAP21|p.S209Yfs*11|1|0.06|ENSG00000107863|chr10:24621269-24621270|-/T|frameshift_variant	REV__ARHGAP21|p.S209Yfs*11|1|0.06|ENSG00000107863|chr10:24621269-24621270|-/T|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	428.713611	855.412668	-1.7214	-0.00073797	1.5326	0.00065704	-0.18878	-8.0931E-05	428.7141117670351	85.513	1.9669	84.023	83.307	85.274	-1.4906	0.10038	0.00099732	NaN	71.296	78	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107070	+		35925	15653	29592	29618							-0.02082148573708764
LTFGRINILTL	11	Unmodified	_LTFGRINILTL_					0	0	0			REV__ENST00000436120.6_1_19:37880008-37880230:+|nuORF	REV__ENST00000436120.6_1_19:37880008-37880230:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	420.9270324707031	3	420.927329	1259.76016	1.2533	0.00052756	-1.2851	-0.00054095	-0.031812	-1.3391E-05	420.9267661520996	69.682	2.4064	66.928	66.572	68.979	-2.754					153	47	6	0	0	0	0.4744	1	3120	3120		55.721	4.1933	1	1507300	+		35926	25781	29593	29619	39339	39339					0.14066797908026274
LTFGRKKVR	9	Unmodified	_LTFGRKKVR_					0	0	0		ENSG00000168497|ENST00000304141|CAVIN2	ENSG00000168497|ENST00000304141|CAVIN2	ENSG00000168497|ENST00000304141|CAVIN2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.8035278320312	2	552.85365	1103.69275	-0.89044	-0.00049228	0.86372	0.00047751	-0.026718	-1.4771E-05	552.854417193978	42.022	0.36774	39.041	38.748	39.116	-2.9804					9	6	2	0	0	0	0.027462	1	1921	1921		10.866	0	1	12040			35927	6914	29594	29620	39340	39340					0.14504812487734853
LTFHGQEL	8	Unmodified	_LTFHGQEL_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.28277587890625	2	472.745442	943.476331	-0.40771	-0.00019274	-0.1856	-8.7741E-05	-0.59331	-0.00028048	472.7451965201466	87.451	1.2069	84.824	84.499	85.706	-2.6269					51	23	3	0	0	0	0.028476	1	7507	7507		38.806	0	1	244270			35928	1073	29595	29621	39341	39341					0.0023321186339444466
LTFHRFPFS	9	Unmodified	_LTFHRFPFS_					0	0	0		nc|ENSG00000041988|Q8WTV1-4|THAP3;nc|ENSG00000041988|Q8WTV1-3|THAP3;ENSG00000041988|ENST00000054650|THAP3	nc|ENSG00000041988|Q8WTV1-4|THAP3	nc|ENSG00000041988|Q8WTV1-4|THAP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.2842407226562	2	576.303458	1150.59236	1.6572	0.00095507	3.6535	0.0021055	5.3107	0.0030606	576.8066225565724	96.951	0.5145	96.951	96.71	97.225	0					15	11	2	0	0	0	0.027462	1	10606	10606		23.042	0	1	322210			35929	1120	29596	29622	39342	39342					0.02309155434090826
LTFIFKGFL	9	Unmodified	_LTFIFKGFL_					0	0	0			REV__tr|A0A553SKU6|A0A553SKU6_NIACIDUF1385domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_19415PE=4SV=1	REV__tr|A0A553SKU6|A0A553SKU6_NIACIDUF1385domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_19415PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.321533203125	2	543.323328	1084.6321	-1.4553	-0.00079071	0.82608	0.00044883	-0.62925	-0.00034188	543.323595205507	120.55	1.132	119.21	118.93	120.06	-1.3444					48	21	3	0	0	0	0.44568	2	11342	11332;11342		47.657	3.1263	1	226840	+		35930	30153	29597	29623	39343;39344	39344					0.09317282384790815
LTFIFKQVNKA	11	Unmodified	_LTFIFKQVNKA_					0	0	0			REV__ENST00000518327.1_1_8:6566222-6612655:+|nuORF	REV__ENST00000518327.1_1_8:6566222-6612655:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.57904052734375	3	436.927329	1307.76016	0.60671	0.00026509	-2.8444	-0.0012428	-2.2377	-0.0009777	436.9254083821141	60.275	0.74004	56.845	56.504	57.244	-3.43					18	14	2	0	0	0	0.025864	1	4114	4114		28.577	0	1	12199	+		35931	27030	29598	29624	39345	39345					0.1185879790805302
LTFKKSLD	8	Unmodified	_LTFKKSLD_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.25689697265625	2	476.279118	950.543683	2.381	0.001134	0.36709	0.00017484	2.7481	0.0013088	476.27833372409106	82.609	0.25802	82.609	82.394	82.652	0					7	5	2	0	0	0	0.028476	1	8558	8558		42.474	0	1	70283			35932	3959	29599	29625	39346	39346					0.06643242074335376
LTFKNVLQ	8	Unmodified	_LTFKNVLQ_					0	0	0			REV__ENSG00000176563|ENST00000588408|CNTD1	REV__ENSG00000176563|ENST00000588408|CNTD1	MULTI-MSMS	OvCa99_classI_Rep5	1	481.7889404296875	2	481.78711	961.559667	1.0667	0.00051394	0.33275	0.00016031	1.3995	0.00067425	481.78706185755743	102.03	0.3885	102.03	101.82	102.21	0					20	8	3	0	0	0	0.48084	1	11360	11360		79.451	2.6769	1	764630	+		35933	21956	29600	29626	39347	39347					0.07734948311224343
LTFLPYVVK	9	Unmodified	_LTFLPYVVK_					0	0	0		tr|A0A553SPD3|A0A553SPD3_NIACIDihydrolipoamideacetyltransferasecomponentofpyruvatedehydrogenasecomplexOS=NialliacirculansOX=1397GN=CEQ21_26195PE=3SV=1	tr|A0A553SPD3|A0A553SPD3_NIACIDihydrolipoamideacetyltransferasecomponentofpyruvatedehydrogenasecomplexOS=NialliacirculansOX=1397GN=CEQ21_26195PE=3SV=1	tr|A0A553SPD3|A0A553SPD3_NIACIDihydrolipoamideacetyltransferasecomponentofpyruvatedehydrogenasecomplexOS=NialliacirculansOX=1397GN=CEQ21_26195PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3306274414062	2	540.328611	1078.64267	-1.2676	-0.00068491	4.0333	0.0021793	2.7657	0.0014944	540.3307152267141	139.22	4.0818	138.16	137	141.08	-1.0595					200	82	3	0	0	0	0.62352	1	11367	11367		29.15	1.2673	1	55828			35934	34030	29601	29627	39348	39348					0.1064926503922834
LTFLYLLL	8	Unmodified	_LTFLYLLL_					0	0	0			REV__ENSG00000180708|ENST00000641042|OR10K2	REV__ENSG00000180708|ENST00000641042|OR10K2	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.33428955078125	2	498.312429	994.610306	-0.3209	-0.00015991	4.0851	0.0020356	3.7642	0.0018757	498.3137022085424	122.8	0.49313	122.58	122.27	122.76	-0.21803					13	9	2	0	0	0	0.028476	1	11889	11889		50.025	7.5501	1	18081	+		35935	21765	29602	29628	39349	39349					0.1127847763623322
LTFLYWYLSNL	11	Unmodified	_LTFLYWYLSNL_					0	0	0		ENST00000299665.2_1_12:8666137-8666278:+|nuORF	ENST00000299665.2_1_12:8666137-8666278:+|nuORF	ENST00000299665.2_1_12:8666137-8666278:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.7736511230469	3	478.255223	1431.74384	-0.48475	-0.00023184	2.2814	0.0010911	1.7966	0.00085925	478.2562088578884	73.874	0.66239	70.612	70.306	70.969	-3.2616					23	13	3	0	0	0	0.025818	1	5776	5776		17.833	0	1	48967			35936	10164	29603	29629	39350	39350					0.04523671951301367
LTFLYWYLSNL	11	Unmodified	_LTFLYWYLSNL_					0	0	0		ENST00000299665.2_1_12:8666137-8666278:+|nuORF	ENST00000299665.2_1_12:8666137-8666278:+|nuORF	ENST00000299665.2_1_12:8666137-8666278:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		3	478.255223	1431.74384	0.55491	0.00026539	1.3007	0.00062207	1.8556	0.00088746	478.25574858463807	72.892	0.94093	70.405	70.083	71.024	-2.4873	0.020397	-0.00041309	NaN	17.833	49	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61786			35937	10164	29603	29629							0.04523671951301367
LTFRAVQII	9	Unmodified	_LTFRAVQII_					0	0	0		tr|A0A553SRJ7|A0A553SRJ7_NIACITeichoicacidD-alanyltransferaseOS=NialliacirculansOX=1397GN=dltBPE=3SV=1	tr|A0A553SRJ7|A0A553SRJ7_NIACITeichoicacidD-alanyltransferaseOS=NialliacirculansOX=1397GN=dltBPE=3SV=1	tr|A0A553SRJ7|A0A553SRJ7_NIACITeichoicacidD-alanyltransferaseOS=NialliacirculansOX=1397GN=dltBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	530.2824096679688	2	530.829309	1059.64407	-0.43499	-0.00023091	0.042493	2.2557E-05	-0.3925	-0.00020835	530.829271103486	89.771	1.5852	87.691	87.388	88.973	-2.0805					63	30	3	0	0	0	0.027462	1	5558	5558		27.882	0	1	137570			35938	34271	29604	29630	39351	39351					0.11662899127986748
LTFRYKVI	8	Unmodified	_LTFRYKVI_					0	0	0		ENST00000513447.1_1_5:54566383-54570502:-|nuORF	ENST00000513447.1_1_5:54566383-54570502:-|nuORF	ENST00000513447.1_1_5:54566383-54570502:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.7921752929688	2	520.318577	1038.6226	-0.65988	-0.00034335	-2.7333	-0.0014222	-3.3932	-0.0017655	520.3169179153053	96.103	0.84916	94.275	93.978	94.827	-1.8286					33	16	3	0	0	0	0.028476	1	6362	6362		18.324	6.8134	1	89311			35939	13013	29605	29631	39352	39352					0.10483514099269087
LTFSTGTKI	9	Unmodified	_LTFSTGTKI_					0	0	0		OR7D4|p.E173K|1|0.45|ENSG00000174667|chr19:9214321-9214321|C/T|missense_variant	OR7D4|p.E173K|1|0.45|ENSG00000174667|chr19:9214321-9214321|C/T|missense_variant	OR7D4|p.E173K|1|0.45|ENSG00000174667|chr19:9214321-9214321|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.2769470214844	2	484.276575	966.538597	-0.85944	-0.00041621	-0.59548	-0.00028837	-1.4549	-0.00070458	484.276317027799	100.91	1.4748	98.641	98.29	99.765	-2.2665					45	29	3	0	0	0	0.33652	1	9040	9040		58.782	3.2778	1	176330			35940	15466	29606	29632	39353	39353					0.05398938211715176
LTFSTGTKI	9	Unmodified	_LTFSTGTKI_					0	0	0		OR7D4|p.E173K|1|0.45|ENSG00000174667|chr19:9214321-9214321|C/T|missense_variant	OR7D4|p.E173K|1|0.45|ENSG00000174667|chr19:9214321-9214321|C/T|missense_variant	OR7D4|p.E173K|1|0.45|ENSG00000174667|chr19:9214321-9214321|C/T|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	484.276575	966.538597	-0.8053	-0.00038999	0.72351	0.00035038	-0.081798	-3.9613E-05	484.27676353912375	99.389	1.8362	98.559	98.268	100.1	-0.83051	-0.086323	0.00025331	NaN	58.782	69	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146570			35941	15466	29606	29632							0.05398938211715176
LTFSTGTKI	9	Unmodified	_LTFSTGTKI_					0	0	0		OR7D4|p.E173K|1|0.45|ENSG00000174667|chr19:9214321-9214321|C/T|missense_variant	OR7D4|p.E173K|1|0.45|ENSG00000174667|chr19:9214321-9214321|C/T|missense_variant	OR7D4|p.E173K|1|0.45|ENSG00000174667|chr19:9214321-9214321|C/T|missense_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	484.276575	966.538597	-0.98163	-0.00047538	-0.51299	-0.00024843	-1.4946	-0.00072381	484.2763910244211	100.34	2.2868	98.736	98.47	100.76	-1.6053	0.090243	-0.0009443	NaN	58.782	75	44	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166760			35942	15466	29606	29632							0.05398938211715176
LTFVIIKGKK	10	Unmodified	_LTFVIIKGKK_					0	0	0		tr|A0A7D7A0E0|A0A7D7A0E0_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09585PE=4SV=1	tr|A0A7D7A0E0|A0A7D7A0E0_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09585PE=4SV=1	tr|A0A7D7A0E0|A0A7D7A0E0_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09585PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.8365478515625	2	573.884084	1145.75362	1.9566	0.0011229	-0.0072825	-4.1793E-06	1.9493	0.0011187	574.3859885965985	85.067	0.36932	85.067	84.841	85.211	0					10	8	2	0	0	0	0.026994	1	8884	8884		32.812	18.675	1	219530			35943	35993	29607	29633	39354	39354					0.18656904747331282
LTFVPESLENL	11	Unmodified	_LTFVPESLENL_					0	0	0		ADCY3|p.A709*|1|0.16|ENSG00000138031|chr2:24830732-24830756|CCAGGATGAAGATGGCGAGCATGGC/-|frameshift_variant;ADCY3|p.M1074Rfs*59|1|0.08|ENSG00000138031|chr2:24820755-24820756|-/AGCAGTACGGGACACTCCCCAAACC|frameshift_variant;ENSG00000138031|ENST00000679454|ADCY3	ADCY3|p.A709*|1|0.16|ENSG00000138031|chr2:24830732-24830756|CCAGGATGAAGATGGCGAGCATGGC/-|frameshift_variant	ADCY3|p.A709*|1|0.16|ENSG00000138031|chr2:24830732-24830756|CCAGGATGAAGATGGCGAGCATGGC/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	421.22589111328125	3	421.227333	1260.66017	0.71741	0.00030219	-3.0359	-0.0012788	-2.3185	-0.00097663	421.2260829491031	66.384	2.5241	63.688	63.319	65.843	-2.6958					143	50	5	0	0	0	0.62561	1	5172	5172		42.338	0	1	1079000			35944	34	29608	29634	39355	39355					0.040265157835847276
LTGASPFTLEG	11	Unmodified	_LTGASPFTLEG_					0	0	0		ENSG00000162302|ENST00000334205|RPS6KA4;nc|ENSG00000162302|O75676-2|RPS6KA4;ENST00000532885.5_1_11:64128013-64135652:+|nuORF	ENSG00000162302|ENST00000334205|RPS6KA4	ENSG00000162302|ENST00000334205|RPS6KA4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.267822265625	2	546.782222	1091.54989	-0.11712	-6.4039E-05	-1.3764	-0.00075258	-1.4935	-0.00081662	546.7821187757726	64.477	0.43936	61.002	60.637	61.077	-3.475					10	8	2	0	0	0	0.025298	1	4545	4545		39.253	3.6345	1	74268			35945	6168	29609	29635	39356	39356					0.007777155151643456
LTGERLGYL	9	Unmodified	_LTGERLGYL_					0	0	0		ENST00000465998.1_1_3:3170712-3170940:+|nuORF	ENST00000465998.1_1_3:3170712-3170940:+|nuORF	ENST00000465998.1_1_3:3170712-3170940:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.2884826660156	2	511.287474	1020.5604	0.012984	6.6386E-06	0.033611	1.7185E-05	0.046595	2.3823E-05	511.28747165700065	96.247	1.9151	93.821	93.254	95.169	-2.4256					85	33	5	0	0	0	0.11471	1	8504	8504		93.195	2.5946	1	1242600			35946	12279	29610	29636	39357	39357					0.050937429602981865
LTGFIVAFIV	10	Unmodified	_LTGFIVAFIV_					0	0	0		tr|A0A553SK11|A0A553SK11_NIACICvpAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_17985PE=4SV=1	tr|A0A553SK11|A0A553SK11_NIACICvpAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_17985PE=4SV=1	tr|A0A553SK11|A0A553SK11_NIACICvpAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_17985PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3303833007812	2	540.328611	1078.64267	-1.2676	-0.00068491	4.0333	0.0021793	2.7657	0.0014944	540.3307152267141	139.22	4.0818	138.16	137	141.08	-1.0595					200	82	3	0	0	0	0.76627	1	11462	11462		23.042	3.939	1	55828			35947	33565	29611	29637	39358	39358					0.10649265039205602
LTGFVVAPLF	10	Unmodified	_LTGFVVAPLF_					0	0	0		ENSG00000174804|ENST00000531380|FZD4	ENSG00000174804|ENST00000531380|FZD4	ENSG00000174804|ENST00000531380|FZD4	MULTI-MSMS	OvCa99_classI_Rep5	1	532.8117065429688	2	532.312961	1062.61137	1.8817	0.0010017	-3.0542	-0.0016258	-1.1725	-0.00062414	532.3128712590462	117.35	1.4402	117.35	116.95	118.39	0					82	30	5	0	0	0	0.35697	1	13435	13435		73.975	8.5094	1	1350500			35948	7493	29612	29638	39359	39359					0.08256692005124933
LTGGEPERTP	10	Unmodified	_LTGGEPERTP_					0	0	0			REV__ENSG00000136383|ENST00000258888|ALPK3	REV__ENSG00000136383|ENST00000258888|ALPK3	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.752197265625	2	528.769645	1055.52474	2.2694	0.0012	1.7016	0.00089975	3.971	0.0020997	528.7704705935951	98.846	0.43744	98.846	98.638	99.076	0					21	10	3	0	0	0	0.026826	1	10901	10901		36.447	0	1	673720	+		35949	19384	29613	29639	39360	39360					-0.0008033928738768736
LTGGLNKC	8	Unmodified	_LTGGLNKC_					0	0	0		ENST00000406202.2_1_6:157297523-157298164:+|nuORF	ENST00000406202.2_1_6:157297523-157298164:+|nuORF	ENST00000406202.2_1_6:157297523-157298164:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	403.2167663574219	2	403.215463	804.416374	1.1478	0.00046281	-0.59784	-0.00024106	0.54997	0.00022176	403.2153460251286	69.421	0.65575	69.421	69.184	69.84	0					31	15	3	0	0	0	0.67745	1	6607	6607		47.916	0	1	1071000			35950	11479	29614	29640	39361	39361					0.0063419792849117584
LTGHRKETIEL	11	Unmodified	_LTGHRKETIEL_					0	0	0			REV__ENST00000517510.5_1_19:48707456-48744240:-|nuORF	REV__ENST00000517510.5_1_19:48707456-48744240:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	432.9156799316406	3	432.91386	1295.71975	-1.1041	-0.00047799	4.1539	0.0017983	3.0498	0.0013203	432.9158567399814	54.785	2.7829	51.971	51.473	54.256	-2.8139					169	55	5	0	0	0	0.70315	1	3845	3845		28.577	6.0151	1	2816800	+		35951	17728	29615	29641	39362	39362					0.08371831517615647
LTGIRAVKAY	10	Unmodified	_LTGIRAVKAY_					0	0	0		tr|A0A7D6VTT5|A0A7D6VTT5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03870PE=4SV=1	tr|A0A7D6VTT5|A0A7D6VTT5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03870PE=4SV=1	tr|A0A7D6VTT5|A0A7D6VTT5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03870PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	546.3309326171875	2	546.332216	1090.64988	-2.6411	-0.0014429	-0.058936	-3.2199E-05	-2.7001	-0.0014751	546.3320576477423	36.639	1.8723	33.93	33.647	35.519	-2.7097					83	37	3	0	0	0	0.66721	1	1644	1644		34.173	5.023	1	180730			35952	35141	29616	29642	39363	39363					0.10817997639651367
LTGLWRSSL	9	Unmodified	_LTGLWRSSL_					0	0	0		ENST00000521248.5_1_5:150076301-150080613:-|nuORF	ENST00000521248.5_1_5:150076301-150080613:-|nuORF	ENST00000521248.5_1_5:150076301-150080613:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.326416015625	2	516.795466	1031.57638	0.092037	4.7564E-05	1.4991	0.00077474	1.5912	0.0008223	517.2991249867443	111.87	0.63216	110.36	110.11	110.74	-1.5111					18	11	2	0	0	0	0.027462	1	10331	10331		39.253	5.0803	1	19643			35953	13116	29617	29643	39364	39364					0.06185449197187154
LTGPGGRAETE	11	Unmodified	_LTGPGGRAETE_					0	0	0			REV__ENST00000536459.6_1_19:58978634-58978952:+|nuORF	REV__ENST00000536459.6_1_19:58978634-58978952:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	544.275390625	2	544.272552	1086.53055	-0.60819	-0.00033102	3.4438	0.0018743	2.8356	0.0015433	544.2741450939018	38.121	0.49785	38.121	37.896	38.394	0					23	10	3	0	0	0	0.56391	1	2143	2143		47.96	0.30219	1	753280	+		35954	27298	29618	29644	39365	39365					-0.009252407757230685
LTGPPFMPAL	10	Unmodified	_LTGPPFMPAL_					0	0	0			REV__ENST00000395389.2_1_16:29676252-29676393:+|nuORF	REV__ENST00000395389.2_1_16:29676252-29676393:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.7953491210938	2	522.283346	1042.55214	-0.9203	-0.00048066	3.797	0.0019831	2.8767	0.0015025	522.2851700034312	77.53	1.0614	75.177	74.838	75.9	-2.3527					27	20	2	0	0	0	0.026552	1	4065	4065		44.117	1.6423	1	37956	+		35955	25314	29619	29645	39366	39366					0.03256472719294834
LTGRGQVQL	9	Unmodified	_LTGRGQVQL_					0	0	0		ENST00000331569.5_1_8:37554703-37555105:+|nuORF	ENST00000331569.5_1_8:37554703-37555105:+|nuORF	ENST00000331569.5_1_8:37554703-37555105:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.2557678222656	2	486.285266	970.555979	0.46012	0.00022375	2.7901	0.0013568	3.2502	0.0015805	486.286146867504	111.64	1.1585	110.13	109.63	110.79	-1.5111					26	21	2	0	0	0	0.027462	1	10247	10247		24.203	3.7209	1	15017			35956	10449	29620	29646	39367	39367					0.06952278537380607
LTGRGQVQL	9	Unmodified	_LTGRGQVQL_					0	0	0		ENST00000331569.5_1_8:37554703-37555105:+|nuORF	ENST00000331569.5_1_8:37554703-37555105:+|nuORF	ENST00000331569.5_1_8:37554703-37555105:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	486.285266	970.555979	0.22181	0.00010786	3.7816	0.001839	4.0035	0.0019468	486.2869318388845	110.22	0.74121	110.05	109.66	110.4	-0.17236	-0.050094	0.00053884	NaN	21.96	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14221			35957	10449	29620	29646							0.06952278537380607
LTGRGQVQL	9	Unmodified	_LTGRGQVQL_					0	0	0		ENST00000331569.5_1_8:37554703-37555105:+|nuORF	ENST00000331569.5_1_8:37554703-37555105:+|nuORF	ENST00000331569.5_1_8:37554703-37555105:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	486.285266	970.555979	0.57122	0.00027778	2.967	0.0014428	3.5383	0.0017206	486.28636186195763	111.22	0.89325	110.11	109.7	110.6	-1.1038	0.018133	-0.00025343	NaN	21.96	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14050			35958	10449	29620	29646							0.06952278537380607
LTGRIPWPN	9	Unmodified	_LTGRIPWPN_					0	0	0		ENST00000538035.5_3_6:24805023-24805233:-|nuORF	ENST00000538035.5_3_6:24805023-24805233:-|nuORF	ENST00000538035.5_3_6:24805023-24805233:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.2722778320312	2	527.295633	1052.57671	0.20048	0.00010571	-0.92688	-0.00048874	-0.7264	-0.00038303	527.2955124561839	97.352	0.71298	94.974	94.808	95.521	-2.3786					21	13	2	0	0	0	0.027462	1	8651	8651		35.618	1.4457	1	33199			35959	13417	29621	29647	39368	39368					0.052528689170458165
LTGSLLPLQL	10	Unmodified	_LTGSLLPLQL_					0	0	0		ENST00000601004.1_1_19:23567552-23568092:+|nuORF	ENST00000601004.1_1_19:23567552-23568092:+|nuORF	ENST00000601004.1_1_19:23567552-23568092:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	527.8300170898438	2	527.828975	1053.6434	0.76755	0.00040513	1.2325	0.00065053	2	0.0010557	527.8294436673134	153.62	1.5316	153.62	153.3	154.83	0					63	30	4	0	0	0	0.58067	1	18011	18011		44.377	1.5129	1	343370			35960	14221	29622	29648	39369	39369					0.11872059688289482
LTGSPSPPPR	10	Unmodified	_LTGSPSPPPR_					0	0	0			REV__nc|ENSG00000132294|Q14156-3|EFR3A	REV__nc|ENSG00000132294|Q14156-3|EFR3A	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.7781677246094	2	504.777274	1007.53999	-0.42508	-0.00021457	-0.17598	-8.883E-05	-0.60105	-0.0003034	504.77710651401486	57.709	2.0735	54.364	53.628	55.702	-3.3449					118	40	4	0	0	0	0.26424	1	3772	3772		85.161	0	1	342660	+		35961	19064	29623	29649	39370	39370					0.036525723004729116
LTGSWPLPQV	10	Unmodified	_LTGSWPLPQV_					0	0	0		ENST00000487496.1_1_1:16265149-16265919:+|nuORF	ENST00000487496.1_1_1:16265149-16265919:+|nuORF	ENST00000487496.1_1_1:16265149-16265919:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7532958984375	2	549.303124	1096.5917	1.5765	0.00086599	-0.30041	-0.00016501	1.2761	0.00070098	549.3028360648387	129.57	0.84302	129.57	129.31	130.15	0					26	17	2	0	0	0	0.026734	1	15079	15079		47.657	0	1	653380			35962	12645	29624	29650	39371	39371					0.04726315994366814
LTGTPLQNNL	10	Unmodified	_LTGTPLQNNL_					0	0	0		ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000119969|Q9NRZ9-4|HELLS;nc|ENSG00000119969|Q9NRZ9-3|HELLS;nc|ENSG00000119969|Q9NRZ9-2|HELLS;chr10:94545907-94546377|412|11.51|0.65|4.14|+|ENST00000419900|HELLS,HELLS;ENSG00000119969|ENST00000348459|HELLS;nc|ENSG00000111642|Q14839-2|CHD4;ENSG00000111642|ENST00000544040|CHD4;nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5;nc|ENSG00000170004|Q12873-2|CHD3;ENSG00000170004|ENST00000330494|CHD3;nc|ENSG00000170004|Q12873-3|CHD3;nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX	ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000111642|Q14839-2|CHD4;nc|ENSG00000102038|P28370-2|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5;nc|ENSG00000170004|Q12873-2|CHD3;nc|ENSG00000085224|P46100-2|ATRX	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.2593994140625	2	535.795663	1069.57677	-0.12027	-6.4438E-05	-1.6859	-0.00090332	-1.8062	-0.00096776	536.2962319746299	86.757	0.30291	84.58	84.38	84.683	-2.1768					7	5	2	0	0	0	0.026891	1	5162	5162		24.519	0	1	15789			35963	14960;5663;3168;2220;1724;7063	29625	29651	39372	39372					0.04476824126390966
LTGVFFVDI	9	Unmodified	_LTGVFFVDI_					0	0	0		ENST00000465039.5_1_3:45709807-45709834:+|nuORF	ENST00000465039.5_1_3:45709807-45709834:+|nuORF	ENST00000465039.5_1_3:45709807-45709834:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	505.7793884277344	2	505.781493	1009.54843	-1.5489	-0.00078341	-2.9218	-0.0014778	-4.4707	-0.0022612	505.7800462360912	101.56	2.0773	100.8	100.27	102.35	-0.76401					114	41	4	0	0	0	0.22961	1	9323	9323		71.296	10.324	1	757390			35964	12265	29626	29652	39373	39373					0.04404126217104931
LTGVFFVDI	9	Unmodified	_LTGVFFVDI_					0	0	0		ENST00000465039.5_1_3:45709807-45709834:+|nuORF	ENST00000465039.5_1_3:45709807-45709834:+|nuORF	ENST00000465039.5_1_3:45709807-45709834:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	505.7808837890625	2	505.781493	1009.54843	-0.95579	-0.00048342	-3.4384	-0.0017391	-4.3942	-0.0022225	505.77975675104807	102.42	2.1987	100.9	100.27	102.46	-1.5211					112	41	4	0	0	0	0.22961	1	7056	7056		71.296	7.9894	1	821930			35965	12265	29626	29652	39374	39374					0.04404126217104931
LTGVWKKLI	9	Unmodified	_LTGVWKKLI_					0	0	0		ENSG00000221944|ENST00000408957|TIGD1	ENSG00000221944|ENST00000408957|TIGD1	ENSG00000221944|ENST00000408957|TIGD1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.3488159179688	2	529.342052	1056.66955	0.86524	0.00045801	2.4618	0.0013032	3.3271	0.0017612	529.3427007082557	139.55	1.7094	139.55	139.22	140.93	0					119	35	5	0	0	0	0.59259	1	16278	16278		32.812	0	1	1514600			35966	9237	29627	29653	39375	39375					0.14348373650409485
LTHELIGEV	9	Unmodified	_LTHELIGEV_					0	0	0			REV__ENSG00000174231|ENST00000304992|PRPF8	REV__ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	OvCa9_classI_Rep2	2	505.780029296875	2	505.779482	1009.54441	-1.5489	-0.00078341	1.055	0.00053361	-0.49389	-0.0002498	505.7800462360912	101.56	2.0773	100.8	100.27	102.35	-0.76401					114	41	4	0	0	0	0.21395	1	9336	9336		73.975	13.003	1	757390	+		35967	21818	29628	29654	39376	39376					0.040020367233978504
LTHFTVDNI	9	Unmodified	_LTHFTVDNI_					0	0	0			REV__tr|A0A553SIF0|A0A553SIF0_NIACINa+/H+antiporterOS=NialliacirculansOX=1397GN=CEQ21_14735PE=3SV=1	REV__tr|A0A553SIF0|A0A553SIF0_NIACINa+/H+antiporterOS=NialliacirculansOX=1397GN=CEQ21_14735PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	530.279541015625	2	530.277106	1058.53966	0.79862	0.00042349	0.11722	6.2158E-05	0.91583	0.00048565	530.2769826606338	132.06	0.94147	132.06	131.81	132.75	0					36	19	3	0	0	0	0.48324	1	15336	15336		44.117	1.7207	1	196360	+		35968	29886	29629	29655	39377	39377					0.012731525806202626
LTHFYQGIV	9	Unmodified	_LTHFYQGIV_					0	0	0		ENST00000469302.1_1_13:113140309-113144032:-|nuORF;ENSG00000126216|ENST00000261965|TUBGCP3	ENST00000469302.1_1_13:113140309-113144032:-|nuORF	ENST00000469302.1_1_13:113140309-113144032:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	539.8131103515625	2	539.290017	1076.56548	-0.45397	-0.00024482	0.28826	0.00015545	-0.16571	-8.9368E-05	539.2899964525812	111.95	1.3366	110.44	110.11	111.44	-1.5111					59	25	3	0	0	0	0.027462	1	10343	10343		35.618	1.4457	1	112260			35969	3770	29630	29656	39378	39378					0.030260468229016624
LTHFYQGIV	9	Unmodified	_LTHFYQGIV_					0	0	0		ENST00000469302.1_1_13:113140309-113144032:-|nuORF;ENSG00000126216|ENST00000261965|TUBGCP3	ENST00000469302.1_1_13:113140309-113144032:-|nuORF	ENST00000469302.1_1_13:113140309-113144032:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	539.290017	1076.56548	-0.56668	-0.0003056	0.36993	0.0001995	-0.19675	-0.00010611	539.2901584852455	110.32	1.5795	110.15	109.86	111.44	-0.17236	-0.17663	0.00076623	NaN	34.173	68	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102540			35970	3770	29630	29656							0.030260468229016624
LTHFYQGIV	9	Unmodified	_LTHFYQGIV_					0	0	0		ENST00000469302.1_1_13:113140309-113144032:-|nuORF;ENSG00000126216|ENST00000261965|TUBGCP3	ENST00000469302.1_1_13:113140309-113144032:-|nuORF	ENST00000469302.1_1_13:113140309-113144032:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	539.290017	1076.56548	2.2833	0.0012314	-2.3968	-0.0012925	-0.11341	-6.1158E-05	539.2885603549968	111.48	1.2848	110.38	110.05	111.34	-1.1038	0.056929	-0.0022179	NaN	34.173	65	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100620			35971	3770	29630	29656							0.030260468229016624
LTHIPGKLSL	10	Unmodified	_LTHIPGKLSL_					0	0	0			REV__tr|A0A7D6ZUG9|A0A7D6ZUG9_9CLOTDNA(cytosine-5-)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11895PE=3SV=1	REV__tr|A0A7D6ZUG9|A0A7D6ZUG9_9CLOTDNA(cytosine-5-)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11895PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.799072265625	2	539.834591	1077.65463	2.0678	0.0011163	-0.54245	-0.00029283	1.5253	0.00082342	539.8348805365024	82.844	0.21188	82.844	82.694	82.906	0					7	4	2	0	0	0	0.026968	1	8602	8602		36.447	21.582	1	223140	+		35972	32220	29631	29657	39379	39379					0.11890881782437646
LTHLSFID	8	Unmodified	_LTHLSFID_					0	0	0		ENSG00000181767|ENST00000313503|OR8H2;ENSG00000181693|ENST00000641600|OR8H1;ENSG00000181761|ENST00000313472|OR8H3	ENSG00000181767|ENST00000313503|OR8H2	ENSG00000181767|ENST00000313503|OR8H2	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.77862548828125	2	473.255643	944.496732	-1.0507	-0.00049723	-1.2273	-0.00058081	-2.2779	-0.001078	473.2550970193437	34.609	0.42024	34.609	34.351	34.772	0					10	8	2	0	0	0	0.028476	1	1650	1650		31.955	6.5047	1	65797			35973	7952	29632	29658	39380	39380					0.02226382523178927
LTHRLPRVN	9	Unmodified	_LTHRLPRVN_					0	0	0		ENSG00000178233|ENST00000451188|TMEM151B	ENSG00000178233|ENST00000451188|TMEM151B	ENSG00000178233|ENST00000451188|TMEM151B	MULTI-MSMS	OvCa9_classI_Rep3	3	553.3322143554688	2	553.333082	1104.65161	-5.4992	-0.0030429	4.1358	0.0022884	-1.3634	-0.00075444	553.3351787520976	152.55	1.4112	151.58	151.19	152.61	-0.97301					72	28	4	0	0	0	0.70177	1	13080	13080		17.365	0.89182	1	153020			35974	7743	29633	29659	39381	39381					0.10347051448297861
LTHSDRYF	8	Unmodified	_LTHSDRYF_					0	0	0			REV__nc|ENSG00000152942|O75943-3|RAD17	REV__nc|ENSG00000152942|O75943-3|RAD17	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.7966918945312	2	519.753798	1037.49304	0.48311	0.0002511	-1.9139	-0.00099477	-1.4308	-0.00074367	519.7510384680263	79.992	0.55116	77.652	77.36	77.912	-2.3399					14	10	2	0	0	0	0.028476	1	4368	4368		40.573	0	1	17549	+		35975	20311	29634	29660	39382	39382					-0.024202872506748463
LTHSEQLK	8	Unmodified	_LTHSEQLK_					0	0	0			REV__ENSG00000119636|ENST00000394009|BBOF1;REV__ENST00000477986.2_1_14:74512798-74514942:+|nuORF	REV__ENST00000477986.2_1_14:74512798-74514942:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	478.2672424316406	2	478.263999	954.513445	1.7071	0.00081644	4.4847	0.0021449	6.1918	0.0029613	478.2659822244951	127.11	0.58218	127.11	126.73	127.32	0					25	12	3	0	0	0	0.60331	1	14720	14720		63.306	0	1	559820	+		35976	18454;26399	29635	29661	39383	39383					0.034368834091424105
LTIDATGNYL	10	Unmodified	_LTIDATGNYL_					0	0	0			REV__ENSG00000103335|ENST00000301015|PIEZO1	REV__ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	OvCa99_classI_Rep5	1	540.7823486328125	2	540.782222	1079.54989	-0.36105	-0.00019525	0.0050833	2.7489E-06	-0.35597	-0.0001925	540.7820868009242	47.923	0.94729	47.923	47.638	48.585	0					52	21	4	0	0	0	0.45822	1	3497	3497		60.118	8.9256	1	3906300	+		35977	17612	29636	29662	39384	39384					0.013297155151803963
LTIFAKVSCY	10	Unmodified	_LTIFAKVSCY_					0	0	0		ENST00000315249.11_1_17:33338493-33338553:-|nuORF	ENST00000315249.11_1_17:33338493-33338553:-|nuORF	ENST00000315249.11_1_17:33338493-33338553:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.255126953125	2	572.807185	1143.59982	1.4956	0.0008567	1.0964	0.00062805	2.5921	0.0014848	572.8073179156664	135.48	0.60779	135.48	135.17	135.78	0					14	12	2	0	0	0	0.026577	1	15805	15805		49.536	0.094497	1	84594			35978	10331	29637	29663	39385	39385					0.0337612691951108
LTIFPTVANL	10	Unmodified	_LTIFPTVANL_					0	0	0		ENSG00000064313|ENST00000378164|TAF2;TAF2|p.T931Lfs*29|1|0.07|ENSG00000064313|chr8:119756093-119756094|-/ATTTGGAAAAACAGAAATACAAATAG|frameshift_variant;TAF2-DEPTOR|1|fusion	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MSMS	OvCa9_classI_Rep2	2	544.8196411132812	2	544.82115	1087.62775	1.5141	0.00082492	-2.7662	-0.0015071	-1.2521	-0.00068214	544.819169146929	88.915	1.4301	87.547	87.086	88.516	-1.3676					102	28	5	0	0	0	0.55109	1	7813	7813		47.96	4.3087	1	381970			35979	1298	29638	29664	39386	39386					0.08743773171227076
LTIFPTVANL	10	Unmodified	_LTIFPTVANL_					0	0	0		ENSG00000064313|ENST00000378164|TAF2;TAF2|p.T931Lfs*29|1|0.07|ENSG00000064313|chr8:119756093-119756094|-/ATTTGGAAAAACAGAAATACAAATAG|frameshift_variant;TAF2-DEPTOR|1|fusion	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.8214111328125	2	544.82115	1087.62775	-0.062377	-3.3984E-05	-0.59853	-0.00032609	-0.66091	-0.00036008	544.8205827812225	90.078	1.42	87.503	87.1	88.52	-2.575					85	27	5	0	0	0	0.42082	1	7759	7759		65.465	7.2355	1	620420			35980	1298	29638	29664	39387	39387					0.08743773171227076
LTIGLSSVK	9	Unmodified	_LTIGLSSVK_					0	0	0		ENSG00000182050|ENST00000611864|MGAT4C;nc|ENSG00000182050|Q9UBM8-2|MGAT4C	ENSG00000182050|ENST00000611864|MGAT4C	ENSG00000182050|ENST00000611864|MGAT4C	MULTI-SECPEP	OvCa9_classI_Rep4_	4	459.2463684082031	2	459.286943	916.559333	-0.22038	-0.00010122	-1.045	-0.00047995	-1.2654	-0.00058116	459.28638251212953	61.966	0.8667	58.508	58.244	59.111	-3.4577					35	17	3	0	0	0	0.027462	1	4301	4301		27.882	0	1	54188			35981	7963	29639	29665	39388	39388					0.09771528591386414
LTIIALINI	9	Unmodified	_LTIIALINI_					0	0	0		tr|A0A7D6ZS01|A0A7D6ZS01_9CLOTSulfateABCtransporterpermeasesubunitCysWOS=ClostridiumintestinaleOX=36845GN=cysWPE=4SV=1	tr|A0A7D6ZS01|A0A7D6ZS01_9CLOTSulfateABCtransporterpermeasesubunitCysWOS=ClostridiumintestinaleOX=36845GN=cysWPE=4SV=1	tr|A0A7D6ZS01|A0A7D6ZS01_9CLOTSulfateABCtransporterpermeasesubunitCysWOS=ClostridiumintestinaleOX=36845GN=cysWPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	492.32958984375	2	492.328611	982.642668	1.1459	0.00056415	0.93935	0.00046247	2.0852	0.0010266	492.32889563765025	146.64	0.48904	146.64	146.43	146.91	0					22	9	3	0	0	0	0.35444	1	17158	17158		56.721	0	1	106000			35982	35728	29640	29666	39389	39389					0.1506526503923169
LTIIGLNGAMT	11	Unmodified	_LTIIGLNGAMT_					0	0	0			REV__ENSG00000167822|ENST00000642058|OR8J3	REV__ENSG00000167822|ENST00000642058|OR8J3	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3178100585938	2	552.310092	1102.60563	-0.6464	-0.00035701	1.9966	0.0011027	1.3502	0.00074572	552.8131524414138	53.715	0.20684	53.715	53.609	53.815	0					6	4	2	0	0	0	0.025638	1	4292	4292		30.318	3.6248	1	168070	+		35983	21310	29641	29667	39390	39390					0.058432254311583165
LTIIGLNGAMT	11	Unmodified	_LTIIGLNGAMT_					0	0	0			REV__ENSG00000167822|ENST00000642058|OR8J3	REV__ENSG00000167822|ENST00000642058|OR8J3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	552.310092	1102.60563	0.2072	0.00011444	-3.5622	-0.0019674	-3.355	-0.001853	552.3085074003452	56.643	0.25449	53.349	53.221	53.476	-3.2944	-0.18304	-0.0032444	NaN	35.152	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14005	+		35984	21310	29641	29667							0.058432254311583165
LTIIISIAVL	10	Unmodified	_LTIIISIAVL_					0	0	0			REV__tr|A0A7D6VXZ0|A0A7D6VXZ0_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14565PE=4SV=1	REV__tr|A0A7D6VXZ0|A0A7D6VXZ0_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14565PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.7930908203125	2	528.357368	1054.70018	-0.1708	-9.0241E-05	-2.8275	-0.0014939	-2.9983	-0.0015842	528.3558744968354	46.873	0.44491	46.873	46.676	47.121	0					12	9	2	0	0	0	0.027117	1	3366	3366		6.3127	3.1534	1	65174	+		35985	31797	29642	29668	39391	39391					0.1750210724480894
LTIILPEDI	9	Unmodified	_LTIILPEDI_					0	0	0		ENST00000509232.5_1_4:164057286-164087879:-|nuORF;nc|ENSG00000145414|Q96HR8-2|NAF1;ENSG00000145414|ENST00000274054|NAF1	ENST00000509232.5_1_4:164057286-164087879:-|nuORF	ENST00000509232.5_1_4:164057286-164087879:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.8079833984375	2	513.807708	1025.60086	0.086417	4.4402E-05	0.87879	0.00045153	0.96521	0.00049593	513.8079474802043	112.14	1.5839	110.62	110.11	111.69	-1.5111					76	30	4	0	0	0	0.46377	1	10350	10350		45.952	1.8352	1	228810			35986	5223	29643	29669	39392	39392					0.08908664560044599
LTIISLKPE	9	Unmodified	_LTIISLKPE_					0	0	0		nc|ENSG00000211633|A0A075B6H8|IGKV1D-42	nc|ENSG00000211633|A0A075B6H8|IGKV1D-42	nc|ENSG00000211633|A0A075B6H8|IGKV1D-42	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.8013610839844	2	507.3157	1012.61685	2.6165	0.0013274	0.36029	0.00018278	2.9768	0.0015102	507.31583704809196	94.334	0.809	94.334	93.923	94.732	0					28	18	3	0	0	0	0.027447	1	10285	10285		56.721	0	1	333380			35987	15285	29644	29670	39393	39393					0.11104370796954299
LTIISLKPE	9	Unmodified	_LTIISLKPE_					0	0	0		nc|ENSG00000211633|A0A075B6H8|IGKV1D-42	nc|ENSG00000211633|A0A075B6H8|IGKV1D-42	nc|ENSG00000211633|A0A075B6H8|IGKV1D-42	MULTI-MATCH	OvCa9_classI_Rep2	2		2	507.3157	1012.61685	-0.52989	-0.00026882	0.76246	0.00038681	0.23257	0.00011799	507.31603742055887	95.069	1.4817	94.034	93.524	95.006	-1.035	-0.15102	-0.00018866	NaN	47.657	61	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94899			35988	15285	29644	29670							0.11104370796954299
LTIKDPRW	8	Unmodified	_LTIKDPRW_					0	0	0		nc|ENSG00000137491|O94956-3|SLCO2B1;ENSG00000137491|ENST00000289575|SLCO2B1;ENST00000531756.5_1_11:74862426-74914042:+|nuORF;nc|ENSG00000137491|O94956-2|SLCO2B1;nc|ENSG00000137491|O94956-4|SLCO2B1;SLCO2B1|p.F356Vfs*3|1|0.04|ENSG00000137491|chr11:75188226-75188227|-/A|frameshift_variant;SLCO2B1|p.Q355Vfs*6|1|0.05|ENSG00000137491|chr11:75188225-75188226|-/GTGAGAG|frameshift_variant	nc|ENSG00000137491|O94956-3|SLCO2B1	nc|ENSG00000137491|O94956-3|SLCO2B1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.7674560546875	2	514.798009	1027.58147	-0.13841	-7.1255E-05	-3.5197	-0.0018119	-3.6581	-0.0018832	514.7959391106054	59.18	1.2374	55.788	55.451	56.689	-3.392					41	24	3	0	0	0	0.028476	1	4015	4015		55.504	2.5675	1	157310			35989	4588	29645	29671	39394	39394					0.06877753059779934
LTIKDPRW	8	Unmodified	_LTIKDPRW_					0	0	0		nc|ENSG00000137491|O94956-3|SLCO2B1;ENSG00000137491|ENST00000289575|SLCO2B1;ENST00000531756.5_1_11:74862426-74914042:+|nuORF;nc|ENSG00000137491|O94956-2|SLCO2B1;nc|ENSG00000137491|O94956-4|SLCO2B1;SLCO2B1|p.F356Vfs*3|1|0.04|ENSG00000137491|chr11:75188226-75188227|-/A|frameshift_variant;SLCO2B1|p.Q355Vfs*6|1|0.05|ENSG00000137491|chr11:75188225-75188226|-/GTGAGAG|frameshift_variant	nc|ENSG00000137491|O94956-3|SLCO2B1	nc|ENSG00000137491|O94956-3|SLCO2B1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.798009	1027.58147	-0.33286	-0.00017136	-3.2129	-0.001654	-3.5457	-0.0018253	514.7961219997841	58.495	1.2201	55.715	55.285	56.505	-2.7801	-0.036702	0.00012444	NaN	55.504	42	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62803			35990	4588	29645	29671							0.06877753059779934
LTIKQKKVL	9	Unmodified	_LTIKQKKVL_					0	0	0		tr|A0A7D7AD85|A0A7D7AD85_9CLOTWingedhelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_22135PE=4SV=1	tr|A0A7D7AD85|A0A7D7AD85_9CLOTWingedhelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_22135PE=4SV=1	tr|A0A7D7AD85|A0A7D7AD85_9CLOTWingedhelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_22135PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.90771484375	2	535.868434	1069.72232	-0.9382	-0.00050275	0.92816	0.00049737	-0.010038	-5.3792E-06	535.868788792188	22.557	1.0565	21.164	20.771	21.828	-1.3935					56	28	3	0	0	0	0.027462	1	274	274		3.41	0	1	43773			35991	36237	29646	29672	39395	39395					0.1902433171321718
LTILLSFLQL	10	Unmodified	_LTILLSFLQL_					0	0	0		tr|A0A553SHG8|A0A553SHG8_NIACIDUF1648domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12865PE=4SV=1	tr|A0A553SHG8|A0A553SHG8_NIACIDUF1648domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12865PE=4SV=1	tr|A0A553SHG8|A0A553SHG8_NIACIDUF1648domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12865PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.302734375	2	580.8681	1159.72165	-0.99313	-0.00057687	2.0763	0.0012061	1.0832	0.0006292	580.8690737496588	53.612	0.38335	53.612	53.432	53.815	0					16	8	3	0	0	0	0.026659	1	4258	4258		45.972	8.1607	1	185090			35992	33272	29647	29673	39396	39396					0.14817492273527932
LTINGIKGGR	10	Unmodified	_LTINGIKGGR_					0	0	0			REV__tr|A0A7D6VTF5|A0A7D6VTF5_9CLOTRibosomebiogenesisGTPaseAOS=ClostridiumintestinaleOX=36845GN=ylqFPE=3SV=1	REV__tr|A0A7D6VTF5|A0A7D6VTF5_9CLOTRibosomebiogenesisGTPaseAOS=ClostridiumintestinaleOX=36845GN=ylqFPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	514.81396484375	2	514.81419	1027.61383	2.5746	0.0013254	-2.6896	-0.0013847	-0.11509	-5.9251E-05	514.8126670332618	27.295	1.0989	24.585	24.394	25.493	-2.7097					55	24	4	0	0	0	0.79213	1	503	503		19.997	2.6318	1	264850	+		35993	31600	29648	29674	39397	39397					0.10112540462819197
LTINKCTLADD	11	Unmodified	_LTINKCTLADD_					0	0	0		ENSG00000086967|ENST00000357701|MYBPC2	ENSG00000086967|ENST00000357701|MYBPC2	ENSG00000086967|ENST00000357701|MYBPC2	MULTI-MSMS	OvCa99_classI_Rep5	1	402.8758239746094	3	402.872673	1205.59619	0.78428	0.00031597	3.6028	0.0014515	4.3871	0.0017674	402.8740180441066	59.75	1.7924	59.75	59.452	61.245	0					108	43	5	0	0	0	0.60323	1	5154	5154		45.908	3.0438	1	9269000			35994	1756	29649	29675	39398	39398					0.0016141235496434092
LTIPNKYLL	9	Unmodified	_LTIPNKYLL_					0	0	0		ENSG00000143669|ENST00000389793|LYST;ENST00000473037.5_1_1:235826242-235897989:-|nuORF	ENSG00000143669|ENST00000389793|LYST	ENSG00000143669|ENST00000389793|LYST	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.2959594726562	2	537.831517	1073.64848	1.9265	0.0010361	-0.10501	-5.6479E-05	1.8215	0.00097964	537.8312083071195	133.71	0.70638	133.71	133.4	134.1	0					32	14	3	0	0	0	0.027462	1	15585	15585		27.882	11.409	1	97628			35995	5084	29650	29676	39399	39399					0.11460363550895636
LTIQKADEV	9	Unmodified	_LTIQKADEV_					0	0	0		ENSG00000115866|ENST00000264161|DARS1;DARS-R3HDM1|1|fusion;ENST00000474184.1_1_2:136736721-136740991:-|nuORF	ENSG00000115866|ENST00000264161|DARS1	ENSG00000115866|ENST00000264161|DARS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.850830078125	2	508.784764	1015.55498	2.539	0.0012918	-0.0040791	-2.0754E-06	2.535	0.0012897	508.7843646928186	90.462	0.34817	90.462	90.228	90.577	0					15	8	2	0	0	0	0.027462	1	9690	9690		15.642	0	1	237040			35996	710	29651	29677	39400	39400					0.047820193778079556
LTIQKADEV	9	Unmodified	_LTIQKADEV_					0	0	0		ENSG00000115866|ENST00000264161|DARS1;DARS-R3HDM1|1|fusion;ENST00000474184.1_1_2:136736721-136740991:-|nuORF	ENSG00000115866|ENST00000264161|DARS1	ENSG00000115866|ENST00000264161|DARS1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	508.784764	1015.55498	-1.6271	-0.00082786	1.4149	0.00071989	-0.21221	-0.00010797	508.7850552345643	92.677	1.0627	90.715	90.514	91.577	-1.9617	0.12648	0.0005198	NaN	47.657	37	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76882			35997	710	29651	29677							0.047820193778079556
LTIQLPKQFS	10	Unmodified	_LTIQLPKQFS_					0	0	0		ENSG00000127951|ENST00000248598|FGL2	ENSG00000127951|ENST00000248598|FGL2	ENSG00000127951|ENST00000248598|FGL2	MULTI-SECPEP	OvCa9_classI_Rep2	2	588.3165283203125	2	587.845156	1173.67576	-0.7236	-0.00042537	-2.8709	-0.0016876	-3.5945	-0.002113	587.8434123603427	46.682	1.2395	43.973	43.596	44.836	-2.7097					58	24	3	0	0	0	0.026714	1	2889	2889		42.864	0.46813	1	209830			35998	3854	29652	29678	39401	39401					0.09586847091281925
LTITLTLQD	9	Unmodified	_LTITLTLQD_					0	0	0		ENST00000505104.5_1_4:9882098-10027590:-|nuORF;nc|ENSG00000109667|Q9NRM0-2|SLC2A9;ENSG00000109667|ENST00000264784|SLC2A9	ENST00000505104.5_1_4:9882098-10027590:-|nuORF	ENST00000505104.5_1_4:9882098-10027590:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.30474853515625	2	509.294965	1016.57538	-1.112	-0.00056636	4.0899	0.002083	2.9778	0.0015166	509.29668163913567	82.521	0.84776	80.225	79.534	80.381	-2.2963					29	16	2	0	0	0	0.027426	1	4669	4669		39.253	0	1	33783			35999	2722	29653	29679	39402	39402					0.06775190037626544
LTIVPGSTNI	10	Unmodified	_LTIVPGSTNI_					0	0	0			REV__Tigger4_dup106|chr1:206074674-206075604:+|2.263376500711114|0.099917421413694|4.5|421.0|50|3|anti-sense	REV__Tigger4_dup106|chr1:206074674-206075604:+|2.263376500711114|0.099917421413694|4.5|421.0|50|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	507.7965393066406	2	507.795132	1013.57571	1.2695	0.00064462	0.89957	0.0004568	2.169	0.0011014	507.79540328842864	138.77	0.96269	138.77	138.4	139.37	0					49	19	4	0	0	0	0.28845	1	16211	16211		82.241	0	1	389320	+		36000	29506	29654	29680	39403	39403					0.06946609757483202
LTKDGRSNVR	10	Unmodified	_LTKDGRSNVR_					0	0	0		ENSG00000177807|ENST00000644903|KCNJ10	ENSG00000177807|ENST00000644903|KCNJ10	ENSG00000177807|ENST00000644903|KCNJ10	MULTI-MSMS	OvCa99_classI_Rep5	1	573.32958984375	2	573.322911	1144.63127	1.0215	0.00058562	0.42321	0.00024264	1.4447	0.00082826	573.3230447646893	150.13	1.1006	150.13	149.84	150.94	0					44	21	3	0	0	0	0.67931	1	17564	17564		32.812	0	1	205480			36001	7712	29655	29681	39404	39404					0.0647383599780369
LTKDSKKLF	9	Unmodified	_LTKDSKKLF_					0	0	0			REV__L1M3_dup291|chr1:173794566-173795729:+|1.281363593639287|0.3648644439828962|1.81|429.0|11|1|sense	REV__L1M3_dup291|chr1:173794566-173795729:+|1.281363593639287|0.3648644439828962|1.81|429.0|11|1|sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.2731323242188	2	540.326599	1078.63865	0.1729	9.3425E-05	-1.6258	-0.00087848	-1.4529	-0.00078505	540.3256783721534	89.423	0.90842	87.292	86.994	87.902	-2.1309					32	17	3	0	0	0	0.027433	1	5533	5533		54.776	0	1	79144	+		36002	28360	29656	29682	39405	39405					0.1024717554550989
LTKEKERTK	9	Unmodified	_LTKEKERTK_					0	0	0			REV__nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	REV__nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.7763671875	2	566.837862	1131.66117	1.1871	0.00067291	2.3584	0.0013368	3.5455	0.0020098	566.8389810601387	122.57	0.78757	121.54	121.37	122.16	-1.0286					19	14	2	0	0	0	0.027462	1	9413	9413		9.7057	0	1	15014	+		36003	17319	29657	29683	39406	39406					0.10060774943121942
LTKELAGAR	9	Unmodified	_LTKELAGAR_					0	0	0		ENSG00000135736|ENST00000258214|CCDC102A	ENSG00000135736|ENST00000258214|CCDC102A	ENSG00000135736|ENST00000258214|CCDC102A	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2615661621094	2	479.787641	957.56073	-0.61014	-0.00029274	-0.33221	-0.00015939	-0.94235	-0.00045213	479.7873570685908	42.247	0.42854	42.247	42.024	42.453	0					12	9	2	0	0	0	0.027418	1	2671	2671		44.377	8.7589	1	61473			36004	4409	29658	29684	39407	39407					0.0802516268013278
LTKHFHAW	8	Unmodified	_LTKHFHAW_					0	0	0			REV__HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|109|3|sense	REV__HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|109|3|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.3095092773438	2	520.277244	1038.53993	-0.15293	-7.9568E-05	4.0078	0.0020852	3.8549	0.0020056	520.2789256562444	83.557	0.65804	81.958	81.825	82.483	-1.5989					18	12	3	0	0	0	0.028476	1	7215	7215		13.775	1.5685	1	29003	+		36005	28267	29659	29685	39408	39408					0.022206170911204026
LTKHLLKSV	9	Unmodified	_LTKHLLKSV_					0	0	0		nc|ENSG00000014123|O94874-2|UFL1;ENSG00000014123|ENST00000369278|UFL1	nc|ENSG00000014123|O94874-2|UFL1	nc|ENSG00000014123|O94874-2|UFL1	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.7966918945312	2	519.837134	1037.65972	0.3577	0.00018595	-0.78909	-0.0004102	-0.43138	-0.00022425	519.836080517625	80.124	2.187	77.784	76.952	79.139	-2.3399					83	42	4	0	0	0	0.027452	1	4368	4368		49.536	1.8787	1	159150			36006	994	29660	29686	39409	39409					0.1423918564505584
LTKHSKRVI	9	Unmodified	_LTKHSKRVI_					0	0	0			REV__ENST00000262215.7_1_8:68200216-68204141:-|nuORF	REV__ENST00000262215.7_1_8:68200216-68204141:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.6619873046875	2	541.345658	1080.67676	-0.2206	-0.00011942	0.11013	5.9616E-05	-0.11048	-5.9806E-05	541.3452854511318	92.669	0.20927	91.501	91.341	91.55	-1.168					5	3	2	0	0	0	0.027461	1	8238	8238		49.442	3.4896	1	4418.6	+		36007	23971	29661	29687	39410	39410					0.139651062508392
LTKHTRKVV	9	Unmodified	_LTKHTRKVV_					0	0	0		ENSG00000153406|ENST00000283429|NMRAL1	ENSG00000153406|ENST00000283429|NMRAL1	ENSG00000153406|ENST00000283429|NMRAL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2943115234375	2	541.345658	1080.67676	2.5392	0.0013746	0.31711	0.00017167	2.8563	0.0015463	541.3457964818322	98.857	0.31102	98.857	98.725	99.036	0					11	7	2	0	0	0	0.027462	1	10924	10924		16.473	3.514	1	333740			36008	5681	29662	29688	39411	39411					0.139651062508392
LTKILKYTTR	10	Unmodified	_LTKILKYTTR_					0	0	0			REV__ENSG00000158486|ENST00000698260|DNAH3	REV__ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	OvCa99_classI_Rep5	1	412.92730712890625	3	412.927329	1235.76016	1.3925	0.00057501	-0.5646	-0.00023314	0.82794	0.00034188	412.9271482474017	45.564	1.926	45.564	44.75	46.676	0					97	43	4	0	0	0	0.74091	1	3174	3174		25.892	5.8612	1	3464900	+		36009	20568	29663	29689	39412	39412					0.151707979080129
LTKKSAHLKNC	11	Unmodified	_LTKKSAHLKNC_					0	0	0			REV__nc|ENSG00000177888|Q5SVQ8-2|ZBTB41	REV__nc|ENSG00000177888|Q5SVQ8-2|ZBTB41	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.8980712890625	3	414.904419	1241.69143	0.80283	0.0003331	-3.2492	-0.0013481	-2.4464	-0.001015	415.23708034441404	32.744	0.29336	32.744	32.503	32.796	0					7	5	2	0	0	0	0.025806	1	1441	1441		4.8861	0	1	19343	+		36010	22031	29664	29690	39413	39413					0.08024810336678456
LTKKSSKRK	9	Unmodified	_LTKKSSKRK_					0	0	0		tr|A0A7D6ZVS3|A0A7D6ZVS3_9CLOTLargeribosomalsubunitproteinbL35OS=ClostridiumintestinaleOX=36845GN=rpmIPE=3SV=1	tr|A0A7D6ZVS3|A0A7D6ZVS3_9CLOTLargeribosomalsubunitproteinbL35OS=ClostridiumintestinaleOX=36845GN=rpmIPE=3SV=1	tr|A0A7D6ZVS3|A0A7D6ZVS3_9CLOTLargeribosomalsubunitproteinbL35OS=ClostridiumintestinaleOX=36845GN=rpmIPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	538.3529052734375	2	538.35094	1074.68733	1.9638	0.0010572	1.6366	0.00088108	3.6004	0.0019383	538.3516679385732	66.531	2.2143	63.585	63.265	65.479	-2.9459					98	43	3	0	0	0	0.38969	1	2738	2738		52.937	5.2794	1	167090			36011	35813	29665	29691	39414	39414					0.15297088905276723
LTKLENYQN	9	Unmodified	_LTKLENYQN_					0	0	0		tr|A0A553SMD0|A0A553SMD0_NIACIGGDEFdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22335PE=4SV=1	tr|A0A553SMD0|A0A553SMD0_NIACIGGDEFdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22335PE=4SV=1	tr|A0A553SMD0|A0A553SMD0_NIACIGGDEFdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22335PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	561.79541015625	2	561.793121	1121.57169	2.7692	0.0015557	1.7692	0.0009939	4.5384	0.0025496	561.794274020894	116.34	2.2552	116.34	115.49	117.74	0					81	48	2	0	0	0	0.33652	1	13304	13304		58.782	0.55203	1	1152300			36012	33823	29666	29692	39415	39415					0.0157652026375672
LTKLGVGLLP	10	Unmodified	_LTKLGVGLLP_					0	0	0			REV__ENST00000316509.10_2_17:8062906-8063221:-|nuORF	REV__ENST00000316509.10_2_17:8062906-8063221:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.83465576171875	2	505.83406	1009.65357	-1.0072	-0.00050946	0.49536	0.00025057	-0.5118	-0.00025889	505.8341246057179	89.023	2.1477	86.42	85.832	87.979	-2.6027					77	42	3	0	0	0	0.65434	1	7618	7618		35.618	1.4457	1	218100	+		36013	24406	29667	29693	39416	39416					0.14912667413523195
LTKLQELSI	9	Unmodified	_LTKLQELSI_					0	0	0		ENSG00000079435|ENST00000244289|LIPE;LIPE|p.K223Efs*5|1|0.04|ENSG00000079435|chr19:42426483-42426484|-/C|frameshift_variant	ENSG00000079435|ENST00000244289|LIPE	ENSG00000079435|ENST00000244289|LIPE	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.291259765625	2	522.818607	1043.62266	-1.0896	-0.00056967	0.43009	0.00022486	-0.65953	-0.00034481	522.8186936663063	91.984	0.91412	89.442	89.212	90.126	-2.5425					52	17	4	0	0	0	0.027444	1	8037	8037		38.754	0	1	265000			36014	1616	29668	29694	39417	39417					0.10259469308630287
LTKLVLVN	8	Unmodified	_LTKLVLVN_					0	0	0		nc|ENSG00000166401|P50452-2|SERPINB8;ENSG00000166401|ENST00000397985|SERPINB8	nc|ENSG00000166401|P50452-2|SERPINB8	nc|ENSG00000166401|P50452-2|SERPINB8	MULTI-SECPEP	OvCa99_classI_Rep5	1	449.5986633300781	2	450.299853	898.585153	-0.045183	-2.0346E-05	-2.9757	-0.0013399	-3.0209	-0.0013603	450.298411507128	24.38	0.29782	24.38	24.188	24.486	0					10	5	2	0	0	0	0.028476	1	439	439		16.473	2.6978	1	26014			36015	6674	29669	29695	39418	39418					0.13180422833659122
LTKMTAVVGV	10	Unmodified	_LTKMTAVVGV_					0	0	0			REV__ENST00000323468.9_1_11:108344225-108344408:-|nuORF	REV__ENST00000323468.9_1_11:108344225-108344408:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8035888671875	2	509.801903	1017.58925	-0.41042	-0.00020923	4.0745	0.0020772	3.6641	0.001868	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.73378	1	13369	13369		26.693	1.2427	1	150140	+		36016	24465	29670	29696	39419	39419					0.08116144265079583
LTKNKARVI	9	Unmodified	_LTKNKARVI_					0	0	0		ENSG00000169252|ENST00000305988|ADRB2	ENSG00000169252|ENST00000305988|ADRB2	ENSG00000169252|ENST00000305988|ADRB2	MULTI-MSMS	OvCa99_classI_Rep5	1	521.8440551757812	2	521.840208	1041.66586	2.1377	0.0011155	4.1315	0.002156	6.2692	0.0032715	521.8422118437187	94.224	1.2805	94.224	93.923	95.204	0					75	29	4	0	0	0	0.27001	1	10264	10264		66.429	13.078	1	6918000			36017	6995	29671	29697	39420	39420					0.14669703876552376
LTKNPVVHK	9	Unmodified	_LTKNPVVHK_					0	0	0		ENSG00000282815|ENST00000695840|TEX13C	ENSG00000282815|ENST00000695840|TEX13C	ENSG00000282815|ENST00000695840|TEX13C	MULTI-MSMS	OvCa9_classI_Rep2	2	518.31787109375	2	518.319109	1034.62366	0.17843	9.2486E-05	-4.1731	-0.002163	-3.9947	-0.0020705	518.3168968039378	134.8	1.0273	134.58	133.9	134.93	-0.22696					39	20	3	0	0	0	0.63422	1	13373	13373		27.882	3.6795	1	135940			36018	9607	29672	29698	39421	39421					0.10773728468188892
LTKPKEKPLAS	11	Unmodified	_LTKPKEKPLAS_					0	0	0			REV__VWA3A|p.L778Afs*11|2|0.13|ENSG00000175267|chr16:22140185-22140186|-/C|frameshift_variant	REV__VWA3A|p.L778Afs*11|2|0.13|ENSG00000175267|chr16:22140185-22140186|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3695678710938	2	606.371538	1210.72852	-3.14	-0.001904	-0.05994	-3.6346E-05	-3.1999	-0.0019404	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.71498	3	14872	14872;15033;15094		24.519	2.8334	1	257720	+		36019	21886	29673	29699	39422;39423;39424	39422					0.13158805154080255
LTKPSPLRTE	10	Unmodified	_LTKPSPLRTE_					0	0	0			REV__ENST00000522315.5_1_8:22422780-22424230:+|nuORF	REV__ENST00000522315.5_1_8:22422780-22424230:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	571.2695922851562	2	571.332413	1140.65027	1.0568	0.00060377	-1.5334	-0.00087606	-0.4766	-0.0002723	571.3313847743306	123.99	1.0823	122.95	122.41	123.49	-1.0377					26	20	2	0	0	0	0.026843	1	9584	9584		46.457	27.353	1	31835	+		36020	27082	29674	29700	39425	39425					0.08557372568861865
LTKPSPLRTE	10	Unmodified	_LTKPSPLRTE_					0	0	0			REV__ENST00000522315.5_1_8:22422780-22424230:+|nuORF	REV__ENST00000522315.5_1_8:22422780-22424230:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	571.332413	1140.65027	-0.69657	-0.00039797	0.42187	0.00024103	-0.2747	-0.00015695	571.3325151236645	123.17	0.64097	122.95	122.71	123.35	-0.21803	-0.067374	0.00096515	NaN	46.457	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18272	+		36021	27082	29674	29700							0.08557372568861865
LTKQKKEV	8	Unmodified	_LTKQKKEV_					0	0	0			REV__nc|ENSG00000122417|Q9ULJ1-5|ODF2L	REV__nc|ENSG00000122417|Q9ULJ1-5|ODF2L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.2824401855469	2	487.305667	972.596781	0.45739	0.00022289	4.4501	0.0021686	4.9075	0.0023915	487.30977400211134	98.159	0.95831	95.78	95.216	96.175	-2.3786					35	18	3	0	0	0	0.028476	1	8732	8732		45.952	3.4775	1	41902	+		36022	18594	29675	29701	39426	39426					0.10938619856995047
LTKQLSKAR	9	Unmodified	_LTKQLSKAR_					0	0	0		ENST00000354752.5_1_9:99942307-99949763:-|nuORF	ENST00000354752.5_1_9:99942307-99949763:-|nuORF	ENST00000354752.5_1_9:99942307-99949763:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.806884765625	2	522.82984	1043.64513	-0.96022	-0.00050203	3.9953	0.0020888	3.035	0.0015868	522.8317737989277	94.825	0.90219	92.356	92.11	93.012	-2.4685					24	17	2	0	0	0	0.027462	1	8296	8296		15.642	0	1	21340			36023	10667	29676	29702	39427	39427					0.1250511349687713
LTKQVEIPKGV	11	Unmodified	_LTKQVEIPKGV_					0	0	0			REV__nc|ENSG00000166391|Q3SYC2-2|MOGAT2	REV__nc|ENSG00000166391|Q3SYC2-2|MOGAT2	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3701782226562	2	606.371538	1210.72852	-0.26856	-0.00016285	-2.8049	-0.0017008	-3.0734	-0.0018636	606.369699493104	145.24	3.8933	143.8	141.64	145.53	-1.4357					226	74	4	0	0	0	0.72479	1	14113	14113		18.262	0	1	336140	+		36024	21186	29677	29703	39428	39428					0.13158805154057518
LTKSPRHLSKT	11	Unmodified	_LTKSPRHLSKT_					0	0	0		ENST00000435581.7_1_X:2573089-2573287:+|nuORF	ENST00000435581.7_1_X:2573089-2573287:+|nuORF	ENST00000435581.7_1_X:2573089-2573287:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	634.3765869140625	2	634.377686	1266.74082	0.70958	0.00045014	-0.81179	-0.00051498	-0.10221	-6.4838E-05	634.3769097150116	164.24	2.8363	164.24	163	165.84	0					295	106	3	0	0	0	0.72479	1	19221	19221		18.262	4.125	1	532610			36025	11864	29678	29704	39429	39429					0.11811841617122809
LTKTNKNSL	9	Unmodified	_LTKTNKNSL_					0	0	0			REV__tr|A0A7D6ZXD8|A0A7D6ZXD8_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22595PE=4SV=1	REV__tr|A0A7D6ZXD8|A0A7D6ZXD8_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22595PE=4SV=1	MSMS	OvCa9_classI_Rep4_	4	509.8005676269531	2	509.798206	1017.58186	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.84	1	112.39	111.89	112.89	-1.4461								0	0	0	0.16812	1	10559	10559		56.434	3.4971	1		+		36026	32328	29679	29705	39430	39430					0.07377127989002474
LTKVGASAPL	10	Unmodified	_LTKVGASAPL_					0	0	0			REV__ENST00000531802.1_1_11:59577301-59578245:-|nuORF	REV__ENST00000531802.1_1_11:59577301-59578245:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.77618408203125	2	478.792392	955.570232	-0.13302	-6.3687E-05	0.20368	9.7519E-05	0.070661	3.3832E-05	478.7924065459608	74.45	0.9627	71.22	70.952	71.915	-3.2308					44	19	3	0	0	0	0.027376	1	5870	5870		88.177	0	1	337340	+		36027	21234	29680	29706	39431	39431					0.09066930965661868
LTLAAPVPHI	10	Unmodified	_LTLAAPVPHI_					0	0	0			REV__ENSG00000116525|ENST00000291416|TRIM62	REV__ENSG00000116525|ENST00000291416|TRIM62	MULTI-MSMS	OvCa9_classI_Rep2	2	516.3156127929688	2	516.316035	1030.61752	-0.13711	-7.079E-05	0.13726	7.087E-05	0.00015623	8.0666E-08	516.3159564257851	114.95	1.1352	114.83	114.26	115.39	-0.11777					46	22	3	0	0	0	0.49049	1	10957	10957		55.504	13.108	1	118520	+		36028	18304	29681	29707	39432	39432					0.10343210236646883
LTLALLKSHI	10	Unmodified	_LTLALLKSHI_					0	0	0		ENSG00000166716|ENST00000560079|ZNF592	ENSG00000166716|ENST00000560079|ZNF592	ENSG00000166716|ENST00000560079|ZNF592	MULTI-MSMS	OvCa99_classI_Rep5	1	554.8596801757812	2	554.858067	1107.70158	1.5326	0.00085037	-0.35012	-0.00019427	1.1825	0.00065611	554.8579406695708	147.34	0.39333	147.34	147.16	147.55	0					17	7	4	0	0	0	0.6349	1	17242	17242		37.812	0.65241	1	58191			36029	6704	29682	29708	39433	39433					0.15203741333561993
LTLCDEFDSL	10	Unmodified	_LTLCDEFDSL_					0	0	0			REV__ENSG00000242866|ENST00000450892|STRC	REV__ENSG00000242866|ENST00000450892|STRC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	578.3056640625	2	578.265547	1154.51654	-1.3365	-0.00077283	-1.206	-0.0006974	-2.5425	-0.0014702	578.2649083815431	124.26	0.7175	122.87	122.62	123.34	-1.3908					29	12	3	0	0	0	0.026734	1	11804	11804		47.657	0	1	58681	+		36030	23461	29683	29709	39434	39434					-0.054536543190124576
LTLCDEFDSL	10	Unmodified	_LTLCDEFDSL_					0	0	0			REV__ENSG00000242866|ENST00000450892|STRC	REV__ENSG00000242866|ENST00000450892|STRC	MULTI-MATCH	OvCa9_classI_Rep2	2		2	578.265547	1154.51654	-0.46728	-0.00027021	-2.0303	-0.001174	-2.4976	-0.0014443	578.2642861134642	123.25	0.68994	123.03	122.71	123.4	-0.21803	0.11571	0.00064113	NaN	47.657	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25516	+		36031	23461	29683	29709							-0.054536543190124576
LTLDDLAAV	9	Unmodified	_LTLDDLAAV_					0	0	0		tr|A0A553SNQ3|A0A553SNQ3_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_24975PE=4SV=1	tr|A0A553SNQ3|A0A553SNQ3_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_24975PE=4SV=1	tr|A0A553SNQ3|A0A553SNQ3_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_24975PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	465.76214599609375	2	465.760758	929.506963	1.0573	0.00049245	1.1377	0.00052989	2.195	0.0010223	465.76121088836067	142.51	1.2299	142.51	142.18	143.41	0					44	24	3	0	0	0	0.14739	2	16661	16637;16661		85.359	5.495	1	126890			36032	33945	29684	29710	39435;39436	39436					0.03938945457753107
LTLDGTLLDP	10	Unmodified	_LTLDGTLLDP_					0	0	0			REV__nc|ENSG00000170322|Q6P4R8-3|NFRKB	REV__nc|ENSG00000170322|Q6P4R8-3|NFRKB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.314453125	2	529.292422	1056.57029	-1.686	-0.00089238	1.2232	0.00064741	-0.46282	-0.00024497	529.2925819733208	92.84	1.4905	90.333	89.857	91.348	-2.5072					73	30	4	0	0	0	0.027021	1	8083	8083		10.265	0	1	355540	+		36033	21531	29685	29711	39437	39437					0.0442688617499698
LTLEDLDHED	10	Unmodified	_LTLEDLDHED_					0	0	0		tr|A0A553SLD6|A0A553SLD6_NIACIVirulencefactorOS=NialliacirculansOX=1397GN=CEQ21_20460PE=4SV=1	tr|A0A553SLD6|A0A553SLD6_NIACIVirulencefactorOS=NialliacirculansOX=1397GN=CEQ21_20460PE=4SV=1	tr|A0A553SLD6|A0A553SLD6_NIACIVirulencefactorOS=NialliacirculansOX=1397GN=CEQ21_20460PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	600.2723999023438	2	600.274958	1198.53536	-5.4228	-0.0032552	0.41908	0.00025157	-5.0038	-0.0030036	600.2750319043287	159.18	1.1999	158.96	158.63	159.83	-0.22697					79	23	5	0	0	0	0.82648	1	16271	16271		15.642	0	1	203880			36034	33710	29686	29712	39438	39438					-0.0559640142362241
LTLFPVRLL	9	Unmodified	_LTLFPVRLL_					0	0	0		ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.3509521484375	2	536.349877	1070.6852	1.3328	0.00071487	0.80236	0.00043035	2.1352	0.0011452	536.3502106663832	146.5	2.7916	146.5	146.08	148.87	0					135	56	4	0	0	0	0.28934	1	17155	17155		64.207	0	1	2085000			36035	5679	29687	29713	39439	39439					0.152686601674759
LTLFQRATLSQ	11	Unmodified	_LTLFQRATLSQ_					0	0	0		ENST00000272849.7_2_2:206642940-206643144:+|nuORF	ENST00000272849.7_2_2:206642940-206643144:+|nuORF	ENST00000272849.7_2_2:206642940-206643144:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	639.3642578125	2	639.364244	1276.71394	-4.0344	-0.0025795	2.2611	0.0014457	-1.7733	-0.0011338	639.3655564998056	154.53	1.1695	153.08	152.77	153.94	-1.4516					91	28	4	0	0	0	0.72064	1	15347	15347		22.58	3.4761	1	586460			36036	10003	29688	29714	39440	39440					0.08664733005957714
LTLFYVAIL	9	Unmodified	_LTLFYVAIL_					0	0	0			REV__nc|ENSG00000183307|Q9BXQ6-2|TMEM121B	REV__nc|ENSG00000183307|Q9BXQ6-2|TMEM121B	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.7722778320312	2	526.823161	1051.63177	-0.25974	-0.00013684	-2.1874	-0.0011524	-2.4472	-0.0012892	526.8217151118417	69.162	0.32913	69.162	68.939	69.268	0					12	7	2	0	0	0	0.027462	1	6546	6546		24.203	5.8783	1	242920	+		36037	22353	29689	29715	39441	39441					0.10801862664948203
LTLGAEATLL	10	Unmodified	_LTLGAEATLL_					0	0	0		ENSG00000135426|ENST00000449076|TESPA1	ENSG00000135426|ENST00000449076|TESPA1	ENSG00000135426|ENST00000449076|TESPA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.2964172363281	2	501.297507	1000.58046	-0.7406	-0.00037126	0.40125	0.00020114	-0.33935	-0.00017012	501.29758752104317	121.49	1.58	120.14	119.79	121.37	-1.3479					96	30	5	0	0	0	0.31157	1	11480	11480		79.451	10.664	1	552180			36038	4378	29690	29716	39442	39442					0.08019493900246744
LTLGVLLAF	9	Unmodified	_LTLGVLLAF_					0	0	0		nc|ENSG00000178297|Q7Z410|TMPRSS9;ENSG00000178297|ENST00000696167|TMPRSS9;TMPRSS9|p.M440Ifs*24|1|0.7|ENSG00000178297|chr19:2413866-2413867|-/TCAA|frameshift_variant;ENST00000395264.3_1_19:2389783-2414036:+|nuORF	nc|ENSG00000178297|Q7Z410|TMPRSS9	nc|ENSG00000178297|Q7Z410|TMPRSS9	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.76458740234375	2	473.802229	945.589904	-0.61059	-0.0002893	-1.1194	-0.00053038	-1.73	-0.00081968	473.8020430673216	39.848	0.43059	39.848	39.63	40.06	0					13	9	2	0	0	0	0.027456	1	2380	2380		47.916	0	1	51706			36039	7747	29691	29717	39443	39443					0.11493306976421991
LTLGWPLSH	9	Unmodified	_LTLGWPLSH_					0	0	0			REV__nc|ENSG00000197558|A2VEC9|SSPOP	REV__nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.2302856445312	2	512.284734	1022.55492	0.12919	6.6181E-05	1.2624	0.00064669	1.3916	0.00071287	512.2852528860575	115.55	0.79135	114.15	113.87	114.66	-1.3977					24	15	2	0	0	0	0.027462	1	10794	10794		23.042	0	1	22862	+		36040	29083	29692	29718	39444	39444					0.044540641684761795
LTLGWPLSH	9	Unmodified	_LTLGWPLSH_					0	0	0			REV__nc|ENSG00000197558|A2VEC9|SSPOP	REV__nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	512.284734	1022.55492	0.092059	4.716E-05	0.094539	4.8431E-05	0.1866	9.5591E-05	512.2836598112387	114.32	0.69008	114.2	113.86	114.55	-0.11777	0.0036371	-0.00079374	NaN	23.042	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12999	+		36041	29083	29692	29718							0.044540641684761795
LTLGWPLSH	9	Unmodified	_LTLGWPLSH_					0	0	0			REV__nc|ENSG00000197558|A2VEC9|SSPOP	REV__nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-MATCH	OvCa9_classI_Rep3	3		2	512.284734	1022.55492	-0.16427	-8.4155E-05	-0.28788	-0.00014748	-0.45216	-0.00023163	512.2838512504005	115.3	0.64137	114.25	113.9	114.54	-1.055	0.048022	-0.0011856	NaN	23.042	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18711	+		36042	29083	29692	29718							0.044540641684761795
LTLHAVQSFAK	11	Unmodified	_LTLHAVQSFAK_					0	0	0			REV__nc|ENSG00000197016|Q6ECI4-2|ZNF470	REV__nc|ENSG00000197016|Q6ECI4-2|ZNF470	MULTI-SECPEP	OvCa9_classI_Rep4_	4	405.7461242675781	3	405.567912	1213.68191	0.66365	0.00026916	-1.2203	-0.00049491	-0.55662	-0.00022575	405.5673201545362	73.6	1.0967	70.204	69.93	71.027	-3.3961					61	22	4	0	0	0	0.025508	1	5816	5816		48.602	13.45	1	239140	+		36043	22886	29693	29719	39445	39445					0.0836136532279852
LTLHAVQSFAK	11	Unmodified	_LTLHAVQSFAK_					0	0	0			REV__nc|ENSG00000197016|Q6ECI4-2|ZNF470	REV__nc|ENSG00000197016|Q6ECI4-2|ZNF470	MULTI-MATCH	OvCa9_classI_Rep3	3		3	405.567912	1213.68191	1.0503	0.00042598	-1.1131	-0.00045145	-0.062813	-2.5475E-05	405.5673796167197	72.61	1.2396	70.008	69.72	70.959	-2.6023	-0.007261	0.00019387	NaN	48.602	77	24	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	310210	+		36044	22886	29693	29719							0.0836136532279852
LTLHPSGAAR	10	Unmodified	_LTLHPSGAAR_					0	0	0			REV__ENST00000495703.5_1_1:45808500-45809371:+|nuORF	REV__ENST00000495703.5_1_1:45808500-45809371:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	512.2794189453125	2	511.790715	1021.56688	0.38126	0.00019512	2.9402	0.0015048	3.3215	0.0016999	511.7921656352026	111.72	0.73827	111.58	111.13	111.86	-0.13961					26	14	2	0	0	0	0.026956	1	10573	10573		19.997	2.6318	1	35917	+		36045	19106	29694	29720	39446	39446					0.05695680911662748
LTLHTLAVR	9	Unmodified	_LTLHTLAVR_					0	0	0			REV__nc|ENSG00000126001|Q9BV73-2|CEP250	REV__nc|ENSG00000126001|Q9BV73-2|CEP250	MULTI-SECPEP	OvCa9_classI_Rep3	3	512.8141479492188	2	512.319109	1022.62366	-0.70957	-0.00036353	0.56193	0.00028789	-0.14764	-7.564E-05	512.3194731238557	82.142	0.89624	79.846	79.584	80.48	-2.2963					32	17	3	0	0	0	0.027462	1	4682	4682		30.504	1.3541	1	59349	+		36046	18766	29695	29721	39447	39447					0.11325728468193574
LTLHTLAVR	9	Unmodified	_LTLHTLAVR_					0	0	0			REV__nc|ENSG00000126001|Q9BV73-2|CEP250	REV__nc|ENSG00000126001|Q9BV73-2|CEP250	MULTI-MATCH	OvCa9_classI_Rep2	2		2	512.319109	1022.62366	0.41195	0.00021105	-0.231	-0.00011835	0.18095	9.2704E-05	512.3188265074853	81.188	0.6562	79.539	79.315	79.971	-1.6485	-0.14241	-0.00086406	NaN	21.96	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51826	+		36047	18766	29695	29721							0.11325728468193574
LTLHTLAVR	9	Unmodified	_LTLHTLAVR_					0	0	0			REV__nc|ENSG00000126001|Q9BV73-2|CEP250	REV__nc|ENSG00000126001|Q9BV73-2|CEP250	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	512.319109	1022.62366	-0.74791	-0.00038317	1.026	0.00052564	0.2781	0.00014247	512.3195270108342	82.343	0.68301	79.66	79.393	80.076	-2.6829	-0.021797	0.00042392	NaN	21.96	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49095	+		36048	18766	29695	29721							0.11325728468193574
LTLHTLLLV	9	Unmodified	_LTLHTLLLV_					0	0	0		Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|85|3|sense	Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|85|3|sense	Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|85|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.77655029296875	2	511.83406	1021.65357	1.7614	0.00090154	-0.4226	-0.0002163	1.3388	0.00068524	511.8336594044984	129.58	0.46231	129.58	129.31	129.77	0					12	9	2	0	0	0	0.027417	1	15028	15028		45.952	16.802	1	68647			36049	14387	29696	29722	39448	39448					0.1436066741354125
LTLIGKVFD	9	Unmodified	_LTLIGKVFD_					0	0	0			REV__tr|A0A553SRK9|A0A553SRK9_NIACISugarphosphateisomerase/epimeraseOS=NialliacirculansOX=1397GN=CEQ21_01245PE=4SV=1	REV__tr|A0A553SRK9|A0A553SRK9_NIACISugarphosphateisomerase/epimeraseOS=NialliacirculansOX=1397GN=CEQ21_01245PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.7706298828125	2	503.302593	1004.59063	1.5033	0.0007566	-0.18495	-9.3084E-05	1.3183	0.00066351	503.30231743538576	148.28	0.44362	148.28	148.03	148.47	0					11	8	2	0	0	0	0.027462	1	17337	17337		38.806	9.6566	1	26599	+		36050	30742	29697	29723	39449	39449					0.08852101625473097
LTLIKRDE	8	Unmodified	_LTLIKRDE_					0	0	0		tr|A0A7D6ZZ12|A0A7D6ZZ12_9CLOTPutativeDNAbindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04610PE=4SV=1	tr|A0A7D6ZZ12|A0A7D6ZZ12_9CLOTPutativeDNAbindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04610PE=4SV=1	tr|A0A7D6ZZ12|A0A7D6ZZ12_9CLOTPutativeDNAbindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04610PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.26934814453125	2	494.295299	986.576045	1.6002	0.00079098	4.2779	0.0021145	5.8781	0.0029055	494.2972036412355	125.72	1.2656	125.72	125.42	126.69	0					38	27	3	0	0	0	0.028476	1	14511	14511		71.296	26.919	1	156590			36051	35939	29698	29724	39450	39450					0.08222029477326487
LTLIKRDE	8	Unmodified	_LTLIKRDE_					0	0	0		tr|A0A7D6ZZ12|A0A7D6ZZ12_9CLOTPutativeDNAbindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04610PE=4SV=1	tr|A0A7D6ZZ12|A0A7D6ZZ12_9CLOTPutativeDNAbindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04610PE=4SV=1	tr|A0A7D6ZZ12|A0A7D6ZZ12_9CLOTPutativeDNAbindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04610PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	494.295299	986.576045	0.96591	0.00047744	2.0658	0.0010211	3.0317	0.0014985	494.2961408262781	125.74	0.29716	125.5	125.36	125.65	-0.2359	-0.11098	-0.001688	NaN	71.296	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9475.5			36052	35939	29698	29724							0.08222029477326487
LTLIPSSPHR	10	Unmodified	_LTLIPSSPHR_					0	0	0		ENST00000540898.1_1_6:108985942-108985999:+|nuORF	ENST00000540898.1_1_6:108985942-108985999:+|nuORF	ENST00000540898.1_1_6:108985942-108985999:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	561.267333984375	2	560.827298	1119.64004	0.17477	9.8014E-05	-0.38104	-0.0002137	-0.20627	-0.00011568	560.8269632952173	54.271	1.076	51.023	50.774	51.85	-3.2474					30	20	2	0	0	0	0.026968	1	3369	3369		29.17	7.2102	1	109130			36053	13459	29699	29725	39451	39451					0.08500809634256257
LTLIPSSPHR	10	Unmodified	_LTLIPSSPHR_					0	0	0		ENST00000540898.1_1_6:108985942-108985999:+|nuORF	ENST00000540898.1_1_6:108985942-108985999:+|nuORF	ENST00000540898.1_1_6:108985942-108985999:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	560.827298	1119.64004	-0.68165	-0.00038229	0.14755	8.2747E-05	-0.5341	-0.00029954	560.8272436389193	53.934	0.94484	51.12	50.578	51.523	-2.8139	0.048489	0.00046377	NaN	44.377	27	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32241			36054	13459	29699	29725							0.08500809634256257
LTLIRTRIN	9	Unmodified	_LTLIRTRIN_					0	0	0			REV__L1MD1_dup3486|chr9:6488282-6488529:-|1.1290293695577864|0.0199908630641251|5.82|429.0|14|2|anti-sense	REV__L1MD1_dup3486|chr9:6488282-6488529:-|1.1290293695577864|0.0199908630641251|5.82|429.0|14|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.8126831054688	2	550.35094	1098.68733	-0.036511	-2.0094E-05	-0.42927	-0.00023625	-0.46579	-0.00025635	550.3507061797034	62.682	0.4013	62.682	62.501	62.902	0					14	9	2	0	0	0	0.027462	1	5585	5585		26.693	0	1	319610	+		36055	28433	29700	29726	39452	39452					0.14193088905290097
LTLITRVGL	9	Unmodified	_LTLITRVGL_					0	0	0		nc|ENSG00000123146|P48960-2|ADGRE5;nc|ENSG00000123146|P48960-3|ADGRE5;ENSG00000123146|ENST00000242786|ADGRE5	nc|ENSG00000123146|P48960-2|ADGRE5	nc|ENSG00000123146|P48960-2|ADGRE5	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.8007507324219	2	493.32386	984.633166	-0.34314	-0.00016928	-0.10026	-4.9463E-05	-0.4434	-0.00021874	493.32369301610606	56.435	0.99107	53.631	53.175	54.166	-2.804					28	19	2	0	0	0	0.027461	1	3995	3995		49.442	0	1	18493			36056	3578	29701	29727	39453	39453					0.1402349675371397
LTLKDRPFE	9	Unmodified	_LTLKDRPFE_					0	0	0			REV__ENST00000604236.5_1_10:123239373-123278228:-|nuORF;REV__nc|ENSG00000066468|P21802-22|FGFR2	REV__nc|ENSG00000066468|P21802-22|FGFR2	MULTI-MSMS	OvCa99_classI_Rep5	1	559.8177490234375	2	559.813856	1117.61316	2.0742	0.0011611	3.1356	0.0017553	5.2097	0.0029165	559.8156915922438	133.1	8.2265	133.1	132.6	140.83	0					464	175	6	0	0	0	0.40667	1	15676	15676		51.335	2.1247	1	47573000	+		36057	16817;28724	29702	29728	39454	39454					0.05905701023084475
LTLKEYDLL	9	Unmodified	_LTLKEYDLL_					0	0	0		tr|A0A7D6W0Y7|A0A7D6W0Y7_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_01625PE=4SV=1	tr|A0A7D6W0Y7|A0A7D6W0Y7_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_01625PE=4SV=1	tr|A0A7D6W0Y7|A0A7D6W0Y7_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_01625PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.31884765625	2	554.31844	1106.62233	0.34766	0.00019271	-0.78588	-0.00043563	-0.43822	-0.00024291	554.3179000227359	122.15	1.1552	120.78	120.55	121.7	-1.3666					37	22	2	0	0	0	0.13482	1	11536	11536		87.754	8.3033	1	124880			36058	35393	29703	29729	39455	39455					0.07328049588772956
LTLKNKDGL	9	Unmodified	_LTLKNKDGL_					0	0	0		tr|A0A553SHY8|A0A553SHY8_NIACIcysteine-S-conjugatebeta-lyaseOS=NialliacirculansOX=1397GN=CEQ21_13895PE=3SV=1	tr|A0A553SHY8|A0A553SHY8_NIACIcysteine-S-conjugatebeta-lyaseOS=NialliacirculansOX=1397GN=CEQ21_13895PE=3SV=1	tr|A0A553SHY8|A0A553SHY8_NIACIcysteine-S-conjugatebeta-lyaseOS=NialliacirculansOX=1397GN=CEQ21_13895PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	501.3033142089844	2	501.303124	1000.5917	-0.60395	-0.00030276	1.3791	0.00069136	0.77517	0.0003886	501.3036625968001	45.316	1.7944	42.606	42.199	43.993	-2.7097					88	35	4	0	0	0	0.51865	1	2637	2637		40.778	3.6191	1	439250			36059	33327	29704	29730	39456	39456					0.09142315994370165
LTLKPQTFP	9	Unmodified	_LTLKPQTFP_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.8125	2	522.808042	1043.60153	0.58626	0.0003065	1.3023	0.00068084	1.8885	0.00098735	523.3108200007423	68.629	0.25249	65.815	65.661	65.914	-2.8143					6	4	2	0	0	0	0.027462	1	3000	3000		14.137	0	1	8135.3			36060	2296	29705	29731	39457	39457					0.08147503999748551
LTLKRNPM	8	Unmodified	_LTLKRNPM_					0	0	0		ENSG00000171295|ENST00000304060|ZNF440;ENST00000430298.6_1_19:12222513-12222840:+|nuORF;ENSG00000223547|ENST00000439326|ZNF844	ENSG00000171295|ENST00000304060|ZNF440;ENSG00000223547|ENST00000439326|ZNF844	ENSG00000171295|ENST00000304060|ZNF440	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.259521484375	2	486.786587	971.558621	2.0822	0.0010136	0.046034	2.2409E-05	2.1283	0.001036	486.7874113483244	95.225	0.41882	95.225	94.992	95.41	0					11	9	2	0	0	0	0.028476	1	10402	10402		24.203	0	1	176960			36061	7189;9249	29706	29732	39458	39458					0.07170410670687488
LTLLEISDL	9	Unmodified	_LTLLEISDL_					0	0	0		ENSG00000262814|ENST00000333676|MRPL12	ENSG00000262814|ENST00000333676|MRPL12	ENSG00000262814|ENST00000333676|MRPL12	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.7770690917969	2	508.79734	1015.58013	-0.12736	-6.4801E-05	-1.1795	-0.00060012	-1.3068	-0.00066492	508.7963714505248	83.569	0.82297	80.906	80.681	81.504	-2.6629					39	16	3	0	0	0	0.027426	1	6970	6970		53.351	7.3995	1	169920			36062	9512	29707	29733	39459	39459					0.07296074180396772
LTLLEISDL	9	Unmodified	_LTLLEISDL_					0	0	0		ENSG00000262814|ENST00000333676|MRPL12	ENSG00000262814|ENST00000333676|MRPL12	ENSG00000262814|ENST00000333676|MRPL12	MULTI-MATCH	OvCa9_classI_Rep2	2		2	508.79734	1015.58013	0.2354	0.00011977	-2.7775	-0.0014132	-2.5421	-0.0012934	508.79560732716175	82.479	0.87453	80.88	80.54	81.415	-1.5988	-0.047024	-0.00063769	NaN	53.351	31	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224130			36063	9512	29707	29733							0.07296074180396772
LTLLEISDL	9	Unmodified	_LTLLEISDL_					0	0	0		ENSG00000262814|ENST00000333676|MRPL12	ENSG00000262814|ENST00000333676|MRPL12	ENSG00000262814|ENST00000333676|MRPL12	MULTI-MATCH	OvCa9_classI_Rep3	3		2	508.79734	1015.58013	-1.2887	-0.00065566	-7.4636	-0.0037974	-8.7522	-0.0044531	508.79476857217014	83.291	1.0296	80.995	80.68	81.709	-2.2963	0.067807	-0.0054062	NaN	53.351	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156310			36064	9512	29707	29733							0.07296074180396772
LTLLLMWK	8	Unmodified	_LTLLLMWK_					0	0	0		nc|ENSG00000158019|Q9NXR7-4|BABAM2;nc|ENSG00000158019|Q9NXR7-3|BABAM2;ENSG00000158019|ENST00000379624|BABAM2;nc|ENSG00000158019|Q9NXR7-1|BABAM2;SLC30A6-BRE|2|fusion;SLC30A6-BRE|3|fusion;SLC30A6-BRE|5|fusion;SLC30A6-BRE|6|fusion;SLC30A6-BRE|1|fusion;SLC30A6-BRE|4|fusion	nc|ENSG00000158019|Q9NXR7-4|BABAM2	nc|ENSG00000158019|Q9NXR7-4|BABAM2	MULTI-MSMS	OvCa99_classI_Rep5	1	509.3125	2	509.311906	1016.60926	0.91563	0.00046634	1.6253	0.00082779	2.5409	0.0012941	509.31256821651266	139.84	1.3222	139.84	139.56	140.88	0					49	27	3	0	0	0	0.50674	2	16317	16317;16338		76.847	12.639	1	201660			36065	5924	29708	29734	39460;39461	39460					0.10161939995680314
LTLLQSPSL	9	Unmodified	_LTLLQSPSL_					0	0	0			REV__HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|20|1|sense	REV__HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|20|1|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	486.2928161621094	2	486.292225	970.569897	1.8181	0.00088411	0.26035	0.00012661	2.0784	0.0010107	486.2922784489875	134.34	3.4861	134.34	133.72	137.21	0					179	74	5	0	0	0	0.37135	1	15987	15987		54.776	1.8396	1	13018000	+		36066	16094	29709	29735	39462	39462					0.08343511245811897
LTLLQSPSL	9	Unmodified	_LTLLQSPSL_					0	0	0			REV__HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|20|1|sense	REV__HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|20|1|sense	MSMS	OvCa99_classI_Rep5	1	486.2931823730469	2	486.292225	970.569897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.5	1	137.5	137	138	0								0	0	0	0.16872	1	16039	16039		54.776	0	1		+		36067	16094	29709	29735	39463	39463					0.08343511245811897
LTLLTKTAIF	10	Unmodified	_LTLLTKTAIF_					0	0	0			REV__ENST00000342972.2_1_X:55478539-55478770:+|nuORF	REV__ENST00000342972.2_1_X:55478539-55478770:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.8065795898438	2	560.85245	1119.69035	2.1995	0.0012336	4.1016	0.0023004	6.3011	0.003534	560.8544948689043	127.07	0.13718	127.07	126.96	127.1	0					6	2	3	0	0	0	0.027056	1	14704	14704		27.882	5.9224	1	65278	+		36068	24656	29710	29736	39464	39464					0.13528919239388415
LTLLTLLLL	9	Unmodified	_LTLLTLLLL_					0	0	0		ENSG00000149131|ENST00000278407|SERPING1;nc|ENSG00000149131|P05155-3|SERPING1	ENSG00000149131|ENST00000278407|SERPING1	ENSG00000149131|ENST00000278407|SERPING1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.81201171875	2	506.854461	1011.69437	0.44839	0.00022727	-3.3046	-0.0016749	-2.8562	-0.0014477	506.85272416911505	89.73	0.14821	87.155	87.05	87.198	-2.575					4	2	2	0	0	0	0.027417	1	7704	7704		45.952	0	1	13028			36069	5443	29711	29737	39465	39465					0.18899008733137634
LTLNLVTRAD	10	Unmodified	_LTLNLVTRAD_					0	0	0		ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	ENSG00000162896|ENST00000356495|PIGR	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.3760986328125	2	558.324588	1114.63462	0.46335	0.0002587	-0.1794	-0.00010017	0.28395	0.00015854	558.8241877972652	31.953	0.19868	31.953	31.807	32.006	0					5	3	2	0	0	0	0.02709	1	1344	1344		36.447	17.343	1	9506.6			36070	6245	29712	29738	39466	39466					0.081890860518115
LTLNSQNEL	9	Unmodified	_LTLNSQNEL_					0	0	0			REV__tr|A0A553SHM0|A0A553SHM0_NIACItRNAuridine5-carboxymethylaminomethylmodificationenzymeMnmGOS=NialliacirculansOX=1397GN=mnmGPE=3SV=1	REV__tr|A0A553SHM0|A0A553SHM0_NIACItRNAuridine5-carboxymethylaminomethylmodificationenzymeMnmGOS=NialliacirculansOX=1397GN=mnmGPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.2736206054688	2	516.272021	1030.52949	-0.83522	-0.0004312	1.5811	0.00081628	0.74589	0.00038508	516.2724179692997	79.955	1.37	77.203	77.034	78.404	-2.7514					63	27	3	0	0	0	0.21231	1	6508	6508		74.255	1.3758	1	944990	+		36071	29817	29713	29739	39467	39467					0.01544544855391905
LTLPEAQPQ	9	Unmodified	_LTLPEAQPQ_					0	0	0		ENST00000570117.5_2_16:84215905-84220577:-|nuORF;ENST00000562330.5_1_16:84216724-84218621:-|nuORF;ENST00000564208.5_1_16:84215181-84220577:-|nuORF;ENST00000537450.5_1_16:84215181-84219087:-|nuORF;ENST00000564774.5_1_16:84215181-84218621:-|nuORF;TAF1C|p.V502Afs*47|1|0.32|ENSG00000103168|chr16:84180216-84180226|CAGGGGCTGCA/-|frameshift_variant;ENSG00000103168|ENST00000566732|TAF1C;nc|ENSG00000103168|Q15572|TAF1C	ENST00000570117.5_2_16:84215905-84220577:-|nuORF	ENST00000570117.5_2_16:84215905-84220577:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.2882080078125	2	498.771657	995.528761	-1.0394	-0.0005184	0.62027	0.00030937	-0.41909	-0.00020903	498.77185969427006	91.039	1.3621	89.015	88.727	90.089	-2.0241					56	26	4	0	0	0	0.027232	1	5723	5723		99.375	24.858	1	410290			36072	2289	29714	29740	39468	39468					0.03081750206331435
LTLPFLLH	8	Unmodified	_LTLPFLLH_					0	0	0			REV__ENSG00000116209|ENST00000234831|TMEM59	REV__ENSG00000116209|ENST00000234831|TMEM59	MULTI-MSMS	OvCa9_classI_Rep2	2	477.2922668457031	2	477.294571	952.574589	-0.67291	-0.00032118	-4.1302	-0.0019713	-4.8031	-0.0022925	477.2925674592951	74.361	2.9718	72.39	71.535	74.507	-1.9711					164	56	5	0	0	0	0.52992	1	6081	6081		74.517	0.26156	1	1681900	+		36073	18293	29715	29741	39469	39469					0.09640440179236975
LTLPGPGR	8	Unmodified	_LTLPGPGR_					0	0	0			REV__nc|ENSG00000059122|Q4VC44-4|FLYWCH1	REV__nc|ENSG00000059122|Q4VC44-4|FLYWCH1	MULTI-MSMS	OvCa9_classI_Rep4_	4	405.7461242675781	2	405.745245	809.475937	1.137	0.00046132	-1.1048	-0.00044825	0.032213	1.307E-05	405.74469625687584	74.399	1.7805	71.168	70.816	72.596	-3.2308					87	36	4	0	0	0	0.42208	1	5816	5816		85.359	5.4203	1	1442300	+		36074	16732	29716	29742	39470	39470					0.06357836934193983
LTLPILTKD	9	Unmodified	_LTLPILTKD_					0	0	0		ENSG00000282757|ENST00000633875|DUXB	ENSG00000282757|ENST00000633875|DUXB	ENSG00000282757|ENST00000633875|DUXB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.2688903808594	2	507.3157	1012.61685	0.13145	6.6685E-05	2.8985	0.0014705	3.03	0.0015372	507.31733481756413	96.614	1.762	94.188	93.204	94.966	-2.4256					76	34	3	0	0	0	0.027462	1	8514	8514		30.318	0	1	185140			36075	9606	29717	29743	39471	39471					0.1110437079694293
LTLPKEDYII	10	Unmodified	_LTLPKEDYII_					0	0	0			REV__tr|A0A7D7A6D3|A0A7D7A6D3_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09920PE=4SV=1	REV__tr|A0A7D7A6D3|A0A7D7A6D3_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09920PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	602.8748168945312	2	602.844822	1203.67509	-1.2759	-0.00076919	2.0443	0.0012324	0.76834	0.00046319	603.3459975689046	103.48	0.39542	102.8	102.62	103.02	-0.68459					10	7	2	0	0	0	0.026487	1	9569	9569		65.465	30.313	1	12861	+		36076	32063	29718	29744	39472	39472					0.08140007651581982
LTLPRLVPW	9	Unmodified	_LTLPRLVPW_					0	0	0			REV__ENST00000359551.6_1_8:145158926-145159115:-|nuORF	REV__ENST00000359551.6_1_8:145158926-145159115:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	547.842529296875	2	547.839677	1093.6648	0.65277	0.00035761	3.8336	0.0021002	4.4864	0.0024578	547.8416503303802	71.419	3.1748	68.911	67.929	71.104	-2.5071					123	60	3	0	0	0	0.38529	2	5751	5736;5751		53.351	7.3792	1	1272400	+		36077	24815	29719	29745	39473;39474	39474					0.12171489507659317
LTLPRSVLI	9	Unmodified	_LTLPRSVLI_					0	0	0		SRGAP1|p.G767Vfs*22|1|0.1|ENSG00000196935|chr12:64126051-64126052|-/TTGGGAAGCCTACTGTGCAGATTATAGTGTT|frameshift_variant;SRGAP1|p.L871Pfs*8|1|0.07|ENSG00000196935|chr12:64127929-64127930|CG/-|frameshift_variant;nc|ENSG00000196935|Q7Z6B7-2|SRGAP1;SRGAP1|p.V1061Ffs*17|1|0.04|ENSG00000196935|chr12:64142593-64142594|-/CTTTGTAGGGACATGGATGAAAT|frameshift_variant;ENSG00000196935|ENST00000355086|SRGAP1	SRGAP1|p.G767Vfs*22|1|0.1|ENSG00000196935|chr12:64126051-64126052|-/TTGGGAAGCCTACTGTGCAGATTATAGTGTT|frameshift_variant	SRGAP1|p.G767Vfs*22|1|0.1|ENSG00000196935|chr12:64126051-64126052|-/TTGGGAAGCCTACTGTGCAGATTATAGTGTT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	506.3310241699219	2	506.331685	1010.64882	-0.48567	-0.00024591	0.50848	0.00025746	0.02281	1.155E-05	506.33188661899624	122.71	0.88946	122.49	122.22	123.11	-0.21803					45	17	3	0	0	0	0.50149	1	11917	11917		42.396	1.618	1	120630			36078	8661	29720	29746	39475	39475					0.14391783270752967
LTLPTRLIE	9	Unmodified	_LTLPTRLIE_					0	0	0		nc|ENSG00000156920|Q8IZF6-2|ADGRG4;nc|ENSG00000156920|Q8IZF6-3|ADGRG4;ENSG00000156920|ENST00000394143|ADGRG4	nc|ENSG00000156920|Q8IZF6-2|ADGRG4	nc|ENSG00000156920|Q8IZF6-2|ADGRG4	MULTI-MSMS	OvCa9_classI_Rep3	3	528.3294677734375	2	528.326599	1054.63865	0.33475	0.00017686	3.4023	0.0017975	3.7371	0.0019744	528.3282724916941	128.79	3.3005	127.69	127.27	130.57	-1.0933					188	66	4	0	0	0	0.57283	1	10308	10308		35.152	3.1972	1	235110			36079	5863	29721	29747	39476	39476					0.11351175545519254
LTLQALGLP	9	Unmodified	_LTLQALGLP_					0	0	0		nc|ENSG00000130244|Q17RN3-2|FAM98C;ENSG00000130244|ENST00000252530|FAM98C	nc|ENSG00000130244|Q17RN3-2|FAM98C	nc|ENSG00000130244|Q17RN3-2|FAM98C	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.2598876953125	2	463.289485	924.564418	-0.18402	-8.5257E-05	0.38158	0.00017678	0.19756	9.1526E-05	463.2894649087407	78.331	1.1064	76.591	76.039	77.146	-1.7398					41	21	2	0	0	0	0.027462	1	6564	6564		26.693	0	1	77926			36080	3972	29722	29748	39477	39477					0.09911832453997249
LTLQHLNEN	9	Unmodified	_LTLQHLNEN_					0	0	0			REV__FCN3|p.D185Vfs*3|1|0.16|ENSG00000142748|chr1:27370700-27370701|-/A|frameshift_variant	REV__FCN3|p.D185Vfs*3|1|0.16|ENSG00000142748|chr1:27370700-27370701|-/A|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.334716796875	2	541.285463	1080.55637	-0.32214	-0.00017437	3.6426	0.0019717	3.3205	0.0017973	541.2873803399024	29.676	0.39936	29.676	29.536	29.935	0					11	7	2	0	0	0	0.027462	1	1086	1086		37.812	15.852	1	80881	+		36081	19806	29723	29749	39478	39478					0.019316534665676954
LTLQHNMLV	9	Unmodified	_LTLQHNMLV_					0	0	0			REV__MER57A-int_dup1703|chr19:23112751-23113886:+|1.0685339057591443|0.266030358890427|2.01|427.0|87|3|anti-sense	REV__MER57A-int_dup1703|chr19:23112751-23113886:+|1.0685339057591443|0.266030358890427|2.01|427.0|87|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	534.2588500976562	2	534.797152	1067.57975	0.88571	0.00047368	-4.0678	-0.0021754	-3.1821	-0.0017018	534.7946968945826	108.22	0.51918	107.02	106.8	107.32	-1.1978					16	9	2	0	0	0	0.027455	1	7699	7699		42.396	3.59	1	34408	+		36082	28661	29724	29750	39479	39479					0.048663759795317674
LTLQNAQPL	9	Unmodified	_LTLQNAQPL_					0	0	0			REV__ENST00000500365.2_1_12:47602914-47603049:-|nuORF	REV__ENST00000500365.2_1_12:47602914-47603049:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	499.28759765625	2	499.287474	996.560395	1.2353	0.00061678	-1.6971	-0.00084736	-0.46184	-0.00023059	499.286546654287	90.683	2.2781	89.381	88.929	91.207	-1.302					112	43	4	0	0	0	0.21231	1	8020	8020		74.255	0	1	1027100	+		36083	26812	29725	29751	39480	39480					0.061977429602734446
LTLQNAQPL	9	Unmodified	_LTLQNAQPL_					0	0	0			REV__ENST00000500365.2_1_12:47602914-47603049:-|nuORF	REV__ENST00000500365.2_1_12:47602914-47603049:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	499.2887878417969	2	499.287474	996.560395	-1.1559	-0.0005771	0.43608	0.00021773	-0.71978	-0.00035938	499.2876340721799	91.351	1.3453	89.327	88.879	90.225	-2.0241					77	26	4	0	0	0	0.18193	1	5749	5749		79.451	2.6044	1	1681400	+		36084	26812	29725	29751	39481	39481					0.061977429602734446
LTLRGSRPD	9	Unmodified	_LTLRGSRPD_					0	0	0			REV__nc|ENSG00000136099|O95206-2|PCDH8	REV__nc|ENSG00000136099|O95206-2|PCDH8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.2669677734375	2	507.788173	1013.56179	-1.7527	-0.00088999	2.3379	0.0011871	0.58518	0.00029715	507.7891602902041	87.619	0.80517	84.992	84.698	85.503	-2.6269					25	15	2	0	0	0	0.027462	1	7506	7506		37.812	0	1	242170	+		36085	19357	29726	29752	39482	39482					0.05555377049051913
LTLRKQNP	8	Unmodified	_LTLRKQNP_					0	0	0			REV__ENSG00000068366|ENST00000672401|ACSL4	REV__ENSG00000068366|ENST00000672401|ACSL4	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.3149108886719	2	485.295633	968.576714	0.135	6.5517E-05	0.22701	0.00011017	0.36201	0.00017568	485.2954595221977	62.52	0.45232	62.52	62.209	62.661	0					19	10	3	0	0	0	0.028476	1	5566	5566		30.504	0	1	563660	+		36086	16851	29727	29753	39483	39483					0.09116868917044485
LTLRSQALE	9	Unmodified	_LTLRSQALE_					0	0	0		ENSG00000103549|ENST00000324685|RNF40;nc|ENSG00000103549|O75150-4|RNF40	ENSG00000103549|ENST00000324685|RNF40	ENSG00000103549|ENST00000324685|RNF40	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7626342773438	2	515.798206	1029.58186	-0.58797	-0.00030327	3.659	0.0018873	3.071	0.001584	515.7997694662959	91.278	1.2727	88.736	88.193	89.466	-2.5425					42	24	2	0	0	0	0.027462	1	7840	7840		18.262	0	1	119900			36087	2330	29728	29754	39484	39484					0.06825127989009161
LTLRSQALE	9	Unmodified	_LTLRSQALE_					0	0	0		ENSG00000103549|ENST00000324685|RNF40;nc|ENSG00000103549|O75150-4|RNF40	ENSG00000103549|ENST00000324685|RNF40	ENSG00000103549|ENST00000324685|RNF40	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.798206	1029.58186	1.9023	0.00098121	1.3217	0.00068176	3.2241	0.001663	515.7986808705389	90.057	1.2391	88.755	88.383	89.622	-1.302	0.008896	-0.001051	NaN	12.812	45	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94424			36088	2330	29728	29754							0.06825127989009161
LTLRSQALE	9	Unmodified	_LTLRSQALE_					0	0	0		ENSG00000103549|ENST00000324685|RNF40;nc|ENSG00000103549|O75150-4|RNF40	ENSG00000103549|ENST00000324685|RNF40	ENSG00000103549|ENST00000324685|RNF40	MULTI-MATCH	OvCa9_classI_Rep3	3		2	515.798206	1029.58186	-0.16502	-8.5115E-05	3.3613	0.0017337	3.1962	0.0016486	515.7997650488664	90.828	1.1166	88.748	88.31	89.427	-2.0805	0.0014424	0.0010529	NaN	12.812	40	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137190			36089	2330	29728	29754							0.06825127989009161
LTLRVSKQKQ	10	Unmodified	_LTLRVSKQKQ_					0	0	0		ENST00000474965.1_1_3:112185046-112188848:-|nuORF	ENST00000474965.1_1_3:112185046-112188848:-|nuORF	ENST00000474965.1_1_3:112185046-112188848:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	401.2344970703125	3	400.918945	1199.73501	2.9878	0.0011978	0.55355	0.00022193	3.5413	0.0014198	400.9190137601317	35.132	0.45432	32.283	31.936	32.391	-2.849					13	8	2	0	0	0	0.027198	1	1084	1084		14.086	0	1	11579			36090	12440	29729	29755	39485	39485					0.14312743105460868
LTLSFLGPK	9	Unmodified	_LTLSFLGPK_					0	0	0			REV__nc|ENSG00000104763|Q13510-3|ASAH1	REV__nc|ENSG00000104763|Q13510-3|ASAH1	MULTI-MSMS	OvCa9_classI_Rep3	3	488.29681396484375	2	488.29731	974.580068	1.033	0.00050441	-1.1213	-0.00054754	-0.088324	-4.3128E-05	488.29662142573915	124.3	1.51	123.27	122.82	124.33	-1.0377					67	28	3	0	0	0	0.18193	1	9626	9626		79.451	5.196	1	248350	+		36091	17679	29730	29756	39486	39486					0.09176118971060987
LTLSGLREL	9	Unmodified	_LTLSGLREL_					0	0	0			REV__nc|ENSG00000266412|Q13772-2|NCOA4	REV__nc|ENSG00000266412|Q13772-2|NCOA4	MULTI-MSMS	OvCa9_classI_Rep3	3	501.30157470703125	2	501.303124	1000.5917	-0.04652	-2.3321E-05	-0.24023	-0.00012043	-0.28675	-0.00014375	501.3028698554628	103.86	2.1341	102.42	102.13	104.27	-1.4347					85	40	3	0	0	0	0.12515	2	7213	7213;7219		90.37	16.115	1	402170	+		36092	23588	29731	29757	39487;39488	39487					0.09142315994370165
LTLSLKPN	8	Unmodified	_LTLSLKPN_					0	0	0		HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|45|1|sense	HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|45|1|sense	HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|45|1|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	443.2724609375	2	443.273835	884.533118	0.83529	0.00037026	-3.8589	-0.0017105	-3.0236	-0.0013403	443.27205335230417	138.39	1.523	138.16	137.68	139.21	-0.22696					79	30	3	0	0	0	0.75661	1	13823	13823		19.36	0	1	138730			36093	14456	29732	29758	39489	39489					0.08623259419891838
LTLSLLPQ	8	Unmodified	_LTLSLLPQ_					0	0	0			REV__ENST00000564184.1_1_15:72455114-72459029:-|nuORF	REV__ENST00000564184.1_1_15:72455114-72459029:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	442.7766418457031	2	442.776211	883.537869	0.33152	0.00014679	-0.19995	-8.8533E-05	0.13157	5.8254E-05	442.77600255654266	114.89	1.5649	113.49	113.15	114.71	-1.3977					72	30	4	0	0	0	0.29515	1	10684	10684		108.09	0	1	313930	+		36094	27665	29733	29759	39490	39490					0.09144143562662066
LTLSLPLK	8	Unmodified	_LTLSLPLK_					0	0	0		USP4|p.P480S|1|0.26|ENSG00000114316|chr3:49300541-49300541|G/A|missense_variant	USP4|p.P480S|1|0.26|ENSG00000114316|chr3:49300541-49300541|G/A|missense_variant	USP4|p.P480S|1|0.26|ENSG00000114316|chr3:49300541-49300541|G/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	442.7761535644531	2	442.794404	883.574254	1.8415	0.00081542	-1.9334	-0.00085609	-0.091852	-4.0672E-05	442.79343264905623	113.8	0.7897	113.68	113.42	114.21	-0.11777					25	15	2	0	0	0	0.028476	1	10824	10824		111.65	34.874	1	38578			36095	36296	29734	29760	39491	39491					0.12781020459374304
LTLSLPLK	8	Unmodified	_LTLSLPLK_					0	0	0		USP4|p.P480S|1|0.26|ENSG00000114316|chr3:49300541-49300541|G/A|missense_variant	USP4|p.P480S|1|0.26|ENSG00000114316|chr3:49300541-49300541|G/A|missense_variant	USP4|p.P480S|1|0.26|ENSG00000114316|chr3:49300541-49300541|G/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.7766418457031	2	442.794404	883.574254	0.34242	0.00015162	-0.77864	-0.00034478	-0.43622	-0.00019315	442.7939918750733	114.95	1.015	113.55	113.25	114.27	-1.3977					32	19	3	0	0	0	0.028476	1	10684	10684		96.19	8.4361	1	46985			36096	36296	29734	29760	39492	39492					0.12781020459374304
LTLSLPLQ	8	Unmodified	_LTLSLPLQ_					0	0	0			REV__tr|A0A553SI77|A0A553SI77_NIACIPeptidaseS8OS=NialliacirculansOX=1397GN=CEQ21_14350PE=3SV=1	REV__tr|A0A553SI77|A0A553SI77_NIACIPeptidaseS8OS=NialliacirculansOX=1397GN=CEQ21_14350PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	442.7761535644531	2	442.776211	883.537869	1.7658	0.00078185	-1.5731	-0.00069653	0.19268	8.5315E-05	442.77539906506104	113.91	1.5302	113.79	113.47	115	-0.11777					66	30	3	0	0	0	0.27528	2	10824	10824;10842		111.65	2.7994	1	257310	+		36097	29868	29735	29761	39493;39494	39493					0.09144143562662066
LTLSLPLQ	8	Unmodified	_LTLSLPLQ_					0	0	0			REV__tr|A0A553SI77|A0A553SI77_NIACIPeptidaseS8OS=NialliacirculansOX=1397GN=CEQ21_14350PE=3SV=1	REV__tr|A0A553SI77|A0A553SI77_NIACIPeptidaseS8OS=NialliacirculansOX=1397GN=CEQ21_14350PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	442.7753601074219	2	442.776211	883.537869	0.19053	8.4361E-05	-0.046582	-2.0626E-05	0.14395	6.3736E-05	442.77602560643373	114.63	1.6302	113.58	113.15	114.78	-1.055					71	32	4	0	0	0	0.34187	1	8472	8472		99.375	3.1845	1	301840	+		36098	29868	29735	29761	39495	39495					0.09144143562662066
LTLSLPQL	8	Unmodified	_LTLSLPQL_					0	0	0		tr|A0A553STP0|A0A553STP0_NIACISigma-54-dependentFisfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_05080PE=4SV=1	tr|A0A553STP0|A0A553STP0_NIACISigma-54-dependentFisfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_05080PE=4SV=1	tr|A0A553STP0|A0A553STP0_NIACISigma-54-dependentFisfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_05080PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	442.7762451171875	2	442.776211	883.537869	1.7658	0.00078185	-1.5731	-0.00069653	0.19268	8.5315E-05	442.77539906506104	113.91	1.5302	113.79	113.47	115	-0.11777					66	30	3	0	0	0	0.33046	2	10818	10813;10818		101.6	5.4103	1	257310			36099	34513	29736	29762	39496;39497	39497					0.09144143562662066
LTLSLPQL	8	Unmodified	_LTLSLPQL_					0	0	0		tr|A0A553STP0|A0A553STP0_NIACISigma-54-dependentFisfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_05080PE=4SV=1	tr|A0A553STP0|A0A553STP0_NIACISigma-54-dependentFisfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_05080PE=4SV=1	tr|A0A553STP0|A0A553STP0_NIACISigma-54-dependentFisfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_05080PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	442.775390625	2	442.776211	883.537869	0.19053	8.4361E-05	-0.046582	-2.0626E-05	0.14395	6.3736E-05	442.77602560643373	114.63	1.6302	113.58	113.15	114.78	-1.055					71	32	4	0	0	0	0.28381	2	8466	8466;8491		110.12	5.3733	1	301840			36100	34513	29736	29762	39498;39499	39498					0.09144143562662066
LTLSTKLS	8	Unmodified	_LTLSTKLS_					0	0	0			REV__nc|ENSG00000166348|Q70EL1-9|USP54	REV__nc|ENSG00000166348|Q70EL1-9|USP54	MULTI-MSMS	OvCa99_classI_Rep5	1	431.7679748535156	2	431.765843	861.517133	0.51603	0.0002228	3.8201	0.0016494	4.3361	0.0018722	431.7661651693198	57.701	0.71646	57.701	57.396	58.112	0					40	16	4	0	0	0	0.7224	1	4856	4856		38.806	1.7777	1	905630	+		36101	21180	29737	29763	39500	39500					0.08083553183007552
LTLSTKLSQ	9	Unmodified	_LTLSTKLSQ_					0	0	0			REV__nc|ENSG00000166348|Q70EL1-9|USP54	REV__nc|ENSG00000166348|Q70EL1-9|USP54	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.2478942871094	2	495.795132	989.575711	-0.58189	-0.0002885	0.21963	0.00010889	-0.36226	-0.00017961	495.79520340256175	43.332	0.72307	43.332	43.057	43.78	0					29	16	3	0	0	0	0.027426	1	2915	2915		39.253	6.4404	1	524210	+		36102	21180	29738	29764	39501	39501					0.08050609757481197
LTLTFDTEV	9	Unmodified	_LTLTFDTEV_					0	0	0		tr|A0A7D6VUF2|A0A7D6VUF2_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12925PE=4SV=1	tr|A0A7D6VUF2|A0A7D6VUF2_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12925PE=4SV=1	tr|A0A7D6VUF2|A0A7D6VUF2_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12925PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.7656860351562	2	519.771322	1037.52809	0.53171	0.00027637	-1.8222	-0.00094711	-1.2905	-0.00067074	519.7695468268444	154.15	0.9021	154.15	153.98	154.88	0					22	17	2	0	0	0	0.027462	1	18071	18071		26.693	0	1	39657			36103	35182	29739	29765	39502	39502					0.010829107666040727
LTLTRPHL	8	Unmodified	_LTLTRPHL_					0	0	0			REV__IL21R|p.S45R|1|0.36|ENSG00000103522|chr16:27434430-27434430|A/C|missense_variant	REV__IL21R|p.S45R|1|0.36|ENSG00000103522|chr16:27434430-27434430|A/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.7938537597656	2	475.792727	949.5709	-0.33797	-0.0001608	-0.18826	-8.9574E-05	-0.52624	-0.00025038	475.792555813026	81.153	1.5555	78.442	78.15	79.706	-2.7106					103	31	6	0	0	0	0.53531	1	6649	6649		73.975	5.49	1	2134700	+		36104	28303	29740	29766	39503	39503					0.09409770405375184
LTLTTIQIGIM	11	Unmodified	_LTLTTIQIGIM_					0	0	0			REV__ENST00000467334.1_1_7:140706294-140710288:-|nuORF	REV__ENST00000467334.1_1_7:140706294-140710288:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	602.3499755859375	2	602.354499	1202.69445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	162.83	1	161.2	160.7	161.7	-1.6336								0	0	0	0.19474	1	16092	16092		14.865	0.72775	1		+		36105	26204	29741	29767	39504	39504					0.10120640670834291
LTLVATLFR	9	Unmodified	_LTLVATLFR_					0	0	0		ENST00000416555.1_1_21:41002285-41094411:+|nuORF	ENST00000416555.1_1_21:41002285-41094411:+|nuORF	ENST00000416555.1_1_21:41002285-41094411:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.8195190429688	2	517.32386	1032.63317	0.16001	8.2778E-05	-0.32576	-0.00016853	-0.16575	-8.5747E-05	517.323391884723	78.38	0.84315	76.64	76.406	77.249	-1.7398					20	16	2	0	0	0	0.027462	1	6583	6583		37.159	5.2042	1	44156			36106	11606	29742	29768	39505	39505					0.11815496753729349
LTLVDVNTK	9	Unmodified	_LTLVDVNTK_					0	0	0			REV__tr|A0A553SHH2|A0A553SHH2_NIACITranscription-repair-couplingfactorOS=NialliacirculansOX=1397GN=mfdPE=3SV=1	REV__tr|A0A553SHH2|A0A553SHH2_NIACITranscription-repair-couplingfactorOS=NialliacirculansOX=1397GN=mfdPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.82818603515625	2	501.795132	1001.57571	-0.49853	-0.00025016	1.5587	0.00078217	1.0602	0.00053201	501.795716417282	73.537	1.0421	71.049	70.776	71.818	-2.4873					30	20	2	0	0	0	0.027447	1	3654	3654		39.253	8.9351	1	43862	+		36107	29803	29743	29769	39506	39506					0.07498609757465147
LTLVNSSRH	9	Unmodified	_LTLVNSSRH_					0	0	0			REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF	REV__ENST00000521713.1_1_7:6179681-6199085:+|nuORF	MSMS	OvCa99_classI_Rep5	1	513.7896728515625	2	513.788173	1025.56179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	57.043	1	57.043	56.543	57.543	0								0	0	0	0.024917	1	4769	4769		101.6	21.888	1		+		36108	27074	29744	29770	39507	39507					0.05003377049047231
LTLWNPQS	8	Unmodified	_LTLWNPQS_					0	0	0			REV__ENST00000586495.1_1_17:73872946-73873276:-|nuORF	REV__ENST00000586495.1_1_17:73872946-73873276:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.7720947265625	2	479.753267	957.491981	-0.64276	-0.00030837	3.6795	0.0017653	3.0368	0.0014569	479.75506594403066	73.741	0.95113	70.345	70.076	71.027	-3.3961					32	19	3	0	0	0	0.028476	1	5699	5699		35.618	0	1	148830	+		36109	27865	29745	29771	39508	39508					0.01153498380426754
LTMDKHIML	9	Unmodified	_LTMDKHIML_					0	0	0			REV__ENSG00000188716|ENST00000338487|DUSP29	REV__ENSG00000188716|ENST00000338487|DUSP29	MULTI-SECPEP	OvCa9_classI_Rep2	2	551.8214721679688	2	551.293388	1100.57222	-0.43059	-0.00023738	3.1492	0.0017361	2.7186	0.0014987	551.2940759408715	63.689	1.2578	60.944	60.427	61.685	-2.7444					49	23	3	0	0	0	0.027462	1	4779	4779		44.117	12.162	1	41296	+		36110	22729	29746	29772	39509	39509					0.025959003875868802
LTMGFASILV	10	Unmodified	_LTMGFASILV_					0	0	0			REV__tr|A0A7D6ZJ86|A0A7D6ZJ86_9CLOTYitTfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07705PE=4SV=1	REV__tr|A0A7D6ZJ86|A0A7D6ZJ86_9CLOTYitTfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07705PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	526.2977905273438	2	526.296453	1050.57835	1.6065	0.0008455	1.6356	0.00086083	3.2422	0.0017063	526.2971855236523	89.674	1.3352	88.372	88.087	89.422	-1.302					58	26	3	0	0	0	0.65434	1	7903	7903		35.618	2.1027	1	279530	+		36111	32081	29747	29773	39510	39510					0.055087418907760366
LTMGWISLP	9	Unmodified	_LTMGWISLP_					0	0	0			REV__chr17:36907539-36936564|231|15.24|0.3|5.67|-|0|LHX1-DT,LHX1-DT|1	REV__chr17:36907539-36936564|231|15.24|0.3|5.67|-|0|LHX1-DT,LHX1-DT|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.3019714355469	2	509.275521	1016.53649	0.27356	0.00013932	-3.7726	-0.0019213	-3.499	-0.001782	509.7749478433516	81.75	0.98135	80.101	79.614	80.596	-1.6485					45	18	3	0	0	0	0.027392	1	6945	6945		44.117	17.424	1	59690	+		36112	15942	29748	29774	39511	39511					0.02888186202255838
LTMIFYSL	8	Unmodified	_LTMIFYSL_					0	0	0		tr|A0A7D6ZZY6|A0A7D6ZZY6_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_08145PE=4SV=1	tr|A0A7D6ZZY6|A0A7D6ZZY6_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_08145PE=4SV=1	tr|A0A7D6ZZY6|A0A7D6ZZY6_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_08145PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.8056335449219	2	494.264622	986.514691	-0.74001	-0.00036576	-0.046475	-2.2971E-05	-0.78648	-0.00038873	494.2640482508061	65.824	0.58241	62.338	62.13	62.713	-3.4854					29	11	3	0	0	0	0.028476	1	4772	4772		47.916	14.4	1	46712			36113	35979	29749	29775	39512	39512					0.020893814536748323
LTMILDAVVI	10	Unmodified	_LTMILDAVVI_					0	0	0			REV__ENSG00000138271|ENST00000260843|GPR87	REV__ENSG00000138271|ENST00000260843|GPR87	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.7722778320312	2	544.325211	1086.63587	-1.5282	-0.00083186	-0.33275	-0.00018112	-1.861	-0.001013	544.3246514800504	42.917	0.47175	39.91	39.591	40.063	-3.0074					13	8	2	0	0	0	0.026802	1	2029	2029		26.693	1.1189	1	30497	+		36114	19524	29750	29776	39513	39513					0.09601584096344595
LTMKSVLLN	9	Unmodified	_LTMKSVLLN_					0	0	0			REV__ENST00000327300.11_1_1:32508467-32508587:+|nuORF	REV__ENST00000327300.11_1_1:32508467-32508587:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.80523681640625	2	509.801903	1017.58925	2.0238	0.0010317	1.6092	0.00082039	3.633	0.0018521	509.80258654056354	136.53	4.9049	134.99	133.61	138.51	-1.5437					290	101	5	0	0	0	0.61365	1	13525	13525		30.318	3.6248	1	173450	+		36115	24497	29751	29777	39514	39514					0.08116144265079583
LTMLGHRVLS	10	Unmodified	_LTMLGHRVLS_					0	0	0			REV__nc|ENSG00000124721|Q96JB1-2|DNAH8	REV__nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-SECPEP	OvCa9_classI_Rep3	3	563.3494873046875	2	563.823701	1125.63285	-0.72066	-0.00040633	-2.6293	-0.0014825	-3.35	-0.0018888	563.8219077622281	89.477	0.449	87.379	87.127	87.576	-2.0974					12	8	2	0	0	0	0.026891	1	5516	5516		18.262	0	1	22109	+		36116	18702	29752	29778	39515	39515					0.07505753762211498
LTMLKMTKK	9	Unmodified	_LTMLKMTKK_					0	0	0			REV__ENST00000488149.5_1_3:182910742-182941939:-|nuORF	REV__ENST00000488149.5_1_3:182910742-182941939:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	547.3284301757812	2	547.32723	1092.63991	-1.0329	-0.00056535	0.89464	0.00048966	-0.13828	-7.5683E-05	547.3277122576889	94.735	1.8458	92.839	92.358	94.204	-1.8956					106	36	5	0	0	0	0.33652	1	6143	6143		58.782	12.81	1	1623200	+		36117	16694	29753	29779	39516	39516					0.09729350318411889
LTMLLVFLV	9	Unmodified	_LTMLLVFLV_					0	0	0			REV__nc|ENSG00000135472|Q9BWQ8-2|FAIM2	REV__nc|ENSG00000135472|Q9BWQ8-2|FAIM2	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.8045043945312	2	524.827389	1047.64023	0.35662	0.00018716	1.9446	0.0010206	2.3012	0.0012077	524.8284834580145	92.727	0.61649	91.559	91.288	91.904	-1.168					20	11	2	0	0	0	0.027462	1	8239	8239		31.955	21.089	1	20591	+		36118	19290	29754	29780	39517	39517					0.11831093309911012
LTMLSLLLI	9	Unmodified	_LTMLSLLLI_					0	0	0		tr|A0A553SK81|A0A553SK81_NIACIVWAdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18295PE=4SV=1	tr|A0A553SK81|A0A553SK81_NIACIVWAdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18295PE=4SV=1	tr|A0A553SK81|A0A553SK81_NIACIVWAdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18295PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.7770690917969	2	508.824846	1015.63514	0.21121	0.00010747	2.958	0.0015051	3.1692	0.0016126	508.82643257083447	84.001	1.962	81.338	80.632	82.594	-2.6629					56	40	2	0	0	0	0.027448	1	6970	6970		35.618	0	1	35441			36119	33591	29755	29781	39518	39518					0.12794789447298172
LTMNIKEEK	9	Unmodified	_LTMNIKEEK_					0	0	0			REV__ENST00000506918.1_1_4:155463230-155466996:-|nuORF	REV__ENST00000506918.1_1_4:155463230-155466996:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.3178100585938	2	553.299724	1104.5849	1.2074	0.00066806	-1.9389	-0.0010728	-0.73145	-0.00040471	553.298688625921	83.14	0.34158	83.14	83.078	83.419	0					9	7	2	0	0	0	0.027462	1	8638	8638		51.193	5.2204	1	122580	+		36120	26894	29756	29782	39519	39519					0.0367863505148307
LTMPERQD	8	Unmodified	_LTMPERQD_					0	0	0		ENST00000471474.5_1_7:84001357-84001414:-|nuORF	ENST00000471474.5_1_7:84001357-84001414:-|nuORF	ENST00000471474.5_1_7:84001357-84001414:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	494.78192138671875	2	495.239667	988.46478	-1.1903	-0.00058946	-2.244	-0.0011113	-3.4343	-0.0017008	495.2383303549036	61.789	1.2166	59.03	58.464	59.68	-2.7593					38	23	2	0	0	0	0.028476	1	4585	4585		44.117	0	1	41610			36121	12383	29757	29783	39520	39520					-0.029913532222622052
LTMRVIGGAP	10	Unmodified	_LTMRVIGGAP_					0	0	0			REV__ENST00000565092.6_1_16:1496634-1499128:-|nuORF	REV__ENST00000565092.6_1_16:1496634-1499128:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.8095703125	2	507.791869	1013.56919	-1.0209	-0.00051841	-2.4531	-0.0012457	-3.474	-0.0017641	508.2916554499298	99.723	2.4329	98.892	97.969	100.4	-0.83051					84	48	3	0	0	0	0.027716	1	9087	9087		74.255	33.477	1	86801	+		36122	27676	29758	29784	39521	39521					0.06294393325117653
LTMRVIGGAP	10	Unmodified	_LTMRVIGGAP_					0	0	0			REV__ENST00000565092.6_1_16:1496634-1499128:-|nuORF	REV__ENST00000565092.6_1_16:1496634-1499128:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.8111572265625	2	507.791869	1013.56919	-1.19	-0.00060428	-2.8024	-0.001423	-3.9924	-0.0020273	507.7901546463401	100.64	1.6594	99.039	98.47	100.13	-1.6053					84	32	3	0	0	0	0.027716	1	6850	6850		84.916	8.1414	1	83351	+		36123	27676	29758	29784	39522	39522					0.06294393325117653
LTMRVIGGAP	10	Unmodified	_LTMRVIGGAP_					0	0	0			REV__ENST00000565092.6_1_16:1496634-1499128:-|nuORF	REV__ENST00000565092.6_1_16:1496634-1499128:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.81182861328125	2	507.791869	1013.56919	-0.79356	-0.00040296	-2.845	-0.0014447	-3.6386	-0.0018476	507.7895613792479	101.52	1.3287	99.254	98.7	100.03	-2.2665					60	26	4	0	0	0	0.026936	1	9104	9104		54.776	8.8244	1	74517	+		36124	27676	29758	29784	39523	39523					0.06294393325117653
LTMVGVIRE	9	Oxidation (M)	_LTM(Oxidation (M))VGVIRE_		LTM(1)VGVIRE		LTM(66)VGVIRE	0	0	1		tr|A0A7D7A4M7|A0A7D7A4M7_9CLOTIon-translocatingoxidoreductasecomplexsubunitEOS=ClostridiumintestinaleOX=36845GN=rnfEPE=3SV=1	tr|A0A7D7A4M7|A0A7D7A4M7_9CLOTIon-translocatingoxidoreductasecomplexsubunitEOS=ClostridiumintestinaleOX=36845GN=rnfEPE=3SV=1	tr|A0A7D7A4M7|A0A7D7A4M7_9CLOTIon-translocatingoxidoreductasecomplexsubunitEOS=ClostridiumintestinaleOX=36845GN=rnfEPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	517.2918701171875	2	517.289159	1032.56377	-1.1403	-0.00058988	3.8715	0.0020027	2.7311	0.0014128	517.2911015583525	37.293	0.50724	37.293	37.114	37.621	0					32	10	4	0	0	0	0.27001	1	2035	2035		66.429	9.7082	1	658410			36125	36148	29759	29785	39524	39524		781			0.04878669742629427
LTNDPPGP	8	Unmodified	_LTNDPPGP_					0	0	0			REV__ENST00000404751.7_2_22:20100088-20100440:-|nuORF	REV__ENST00000404751.7_2_22:20100088-20100440:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	405.7461242675781	2	405.703243	809.391933	1.0631	0.00043129	0.1248	5.0632E-05	1.1879	0.00048192	405.70323191444606	74.302	0.71929	71.071	70.861	71.58	-3.2308					21	14	2	0	0	0	0.028476	1	5816	5816		65.803	17.888	1	42308	+		36126	17338	29760	29786	39525	39525					-0.02038738953376651
LTNDPPGP	8	Unmodified	_LTNDPPGP_					0	0	0			REV__ENST00000404751.7_2_22:20100088-20100440:-|nuORF	REV__ENST00000404751.7_2_22:20100088-20100440:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	405.703243	809.391933	1.3741	0.00055746	-0.56227	-0.00022811	0.81179	0.00032934	405.70292634210153	70.686	0.50642	70.686	70.408	70.915	0	-0.19246	-0.00010135	NaN	65.803	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	590400	+		36127	17338	29760	29786							-0.02038738953376651
LTNEDLETAID	11	Unmodified	_LTNEDLETAID_					0	0	0			REV__tr|A0A553SRK7|A0A553SRK7_NIACISigmafactorregulatorC-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01280PE=4SV=1	REV__tr|A0A553SRK7|A0A553SRK7_NIACISigmafactorregulatorC-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01280PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	617.2982788085938	2	617.29589	1232.57723	2.4986	0.0015424	1.6928	0.001045	4.1914	0.0025873	617.2975506194416	107.89	0.89189	107.89	107.52	108.41	0					40	20	3	0	0	0	0.52842	1	12181	12181		51.193	6.8155	1	826940	+		36128	30741	29761	29787	39526	39526					-0.02975845735090843
LTNEVVHMCP	10	Unmodified	_LTNEVVHMCP_					0	0	0		ENSG00000141748|ENST00000269586|ARL5C	ENSG00000141748|ENST00000269586|ARL5C	ENSG00000141748|ENST00000269586|ARL5C	MULTI-SECPEP	OvCa9_classI_Rep2	2	571.805908203125	2	571.770277	1141.526	1.0085	0.00057666	-1.9476	-0.0011136	-0.93905	-0.00053692	571.7691183696925	90.04	1.0393	88.737	88.136	89.176	-1.302					34	20	2	0	0	0	0.026956	1	7888	7888		26.693	16.428	1	22731			36129	4938	29762	29788	39527	39527					-0.03910164514468306
LTNEVVHMCP	10	Unmodified	_LTNEVVHMCP_					0	0	0		ENSG00000141748|ENST00000269586|ARL5C	ENSG00000141748|ENST00000269586|ARL5C	ENSG00000141748|ENST00000269586|ARL5C	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	571.770277	1141.526	-0.42955	-0.0002456	-0.17969	-0.00010274	-0.60923	-0.00034834	571.7703644172113	91.302	0.76549	88.759	88.346	89.111	-2.5425	0.010999	0.00084042	NaN	26.693	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29781			36130	4938	29762	29788							-0.03910164514468306
LTNHIHTGH	9	Unmodified	_LTNHIHTGH_					0	0	0		nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5;nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5	nc|ENSG00000100462|O14744-3|PRMT5	nc|ENSG00000100462|O14744-3|PRMT5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7506103515625	2	515.264865	1028.51518	3.6694	0.0018907	-1.5236	-0.00078506	2.1458	0.0011056	515.2640898619001	132.46	0.79181	130.96	130.69	131.48	-1.5015					31	15	3	0	0	0	0.027461	1	12806	12806		40.778	10.46	1	61529			36131	2072	29763	29789	39528	39528					0.0020593721774275764
LTNKASTAH	9	Unmodified	_LTNKASTAH_					0	0	0			REV__ENST00000508722.5_1_5:34839321-34867279:+|nuORF	REV__ENST00000508722.5_1_5:34839321-34867279:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.7900695800781	2	471.753798	941.493044	-0.090743	-4.2808E-05	2.3441	0.0011058	2.2533	0.001063	471.75358920633613	51.03	0.85534	47.857	47.516	48.372	-3.1734					55	16	6	0	0	0	0.027441	1	2943	2943		29.15	0	1	326800	+		36132	26916	29764	29790	39529	39529					0.019957127493171356
LTNKLTAPQIL	11	Unmodified	_LTNKLTAPQIL_					0	0	0			REV__ENSG00000138483|ENST00000261058|CCDC54	REV__ENSG00000138483|ENST00000261058|CCDC54	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3697509765625	2	606.371538	1210.72852	-3.14	-0.001904	-0.05994	-3.6346E-05	-3.1999	-0.0019404	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.69808	1	14945	14945		30.318	3.6248	1	257720	+		36133	19543	29765	29791	39530	39530					0.13158805154057518
LTNMLTMV	8	2 Oxidation (M)	_LTNM(Oxidation (M))LTM(Oxidation (M))V_		LTNM(1)LTM(1)V		LTNM(82)LTM(82)V	0	0	2			REV__tr|A0A7D6VPE6|A0A7D6VPE6_9CLOTRodshape-determiningproteinMreDOS=ClostridiumintestinaleOX=36845GN=mreDPE=3SV=1	REV__tr|A0A7D6VPE6|A0A7D6VPE6_9CLOTRodshape-determiningproteinMreDOS=ClostridiumintestinaleOX=36845GN=mreDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.73626708984375	2	477.735371	953.456189	-0.80702	-0.00038554	0.95271	0.00045514	0.14568	6.9598E-05	477.7357549598144	44.477	2.0109	41.438	41.106	43.117	-3.0385					107	38	4	0	0	0	0.45246	1	2224	2224		82.305	8.3303	1	902910	+		36134	31240	29766	29792	39531	39531		690;691			-0.02240043183110174
LTNPSEFLEH	10	Unmodified	_LTNPSEFLEH_					0	0	0		ENST00000381759.8_1_19:5016292-5032950:+|nuORF	ENST00000381759.8_1_19:5016292-5032950:+|nuORF	ENST00000381759.8_1_19:5016292-5032950:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	593.7933349609375	2	593.790578	1185.5666	1.5634	0.00092831	1.9316	0.001147	3.495	0.0020753	593.7916196577046	147.53	3.1371	147.53	147.21	150.34	0					152	63	5	0	0	0	0.55359	1	17416	17416		47.657	6.8792	1	2457000			36135	11171	29767	29793	39532	39532					-0.018757835988708393
LTNRIPIVR	9	Unmodified	_LTNRIPIVR_					0	0	0		ENST00000493021.5_1_2:162567177-162757603:+|nuORF;nc|ENSG00000144290|Q6U841-2|SLC4A10;nc|ENSG00000144290|Q6U841-3|SLC4A10;ENSG00000144290|ENST00000446997|SLC4A10;ENST00000461456.5_1_2:162565258-162730321:+|nuORF;nc|ENSG00000144290|Q6U841-4|SLC4A10	ENST00000493021.5_1_2:162567177-162757603:+|nuORF	ENST00000493021.5_1_2:162567177-162757603:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.662841796875	2	541.345658	1080.67676	0.80269	0.00043453	-1.3952	-0.00075529	-0.59252	-0.00032076	541.3447900537216	90.801	2.1299	89.504	89.081	91.211	-1.2976					101	40	4	0	0	0	0.027462	1	8227	8227		26.693	3.6504	1	454150			36136	5140	29768	29794	39533	39533					0.139651062508392
LTNRTVKLL	9	Unmodified	_LTNRTVKLL_					0	0	0			REV__DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant	REV__DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.343017578125	2	529.340041	1056.66553	0.34687	0.00018361	3.8744	0.0020509	4.2212	0.0022345	529.3419281598773	139.64	1.5853	138.15	137.78	139.37	-1.4952					72	30	3	0	0	0	0.67509	1	13605	13605		23.042	2.5607	1	57433	+		36137	16314	29769	29795	39534	39534					0.13946284156713773
LTNSQAKVL	9	Unmodified	_LTNSQAKVL_					0	0	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.2884826660156	2	487.287474	972.560395	1.1989	0.00058423	-1.8531	-0.00090301	-0.65419	-0.00031878	487.286391356687	84.786	0.72565	82.139	81.884	82.609	-2.6472					32	14	3	0	0	0	0.27001	1	7114	7114		66.429	0.6261	1	223970			36138	6836	29770	29796	39535	39535					0.0730174296027144
LTNSQAKVL	9	Unmodified	_LTNSQAKVL_					0	0	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	MULTI-MATCH	OvCa9_classI_Rep3	3		2	487.287474	972.560395	-1.5233	-0.00074227	0.60447	0.00029455	-0.9188	-0.00044772	487.28748947917563	84.489	1.5598	82.228	81.836	83.395	-2.261	0.044479	0.00057992	NaN	66.429	67	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207050			36139	6836	29770	29796							0.0730174296027144
LTNTFPKSLL	10	Unmodified	_LTNTFPKSLL_					0	0	0			REV__ENSG00000181690|ENST00000316981|PLAG1	REV__ENSG00000181690|ENST00000316981|PLAG1	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.3016967773438	2	567.331882	1132.64921	-0.2732	-0.00015499	-3.2224	-0.0018282	-3.4956	-0.0019832	567.3313548613717	59.002	0.22377	59.002	58.932	59.156	0					7	5	2	0	0	0	0.026659	1	5044	5044		54.776	5.3348	1	546700	+		36140	22244	29771	29797	39536	39536					0.0881915819995811
LTNTFPKSLL	10	Unmodified	_LTNTFPKSLL_					0	0	0			REV__ENSG00000181690|ENST00000316981|PLAG1	REV__ENSG00000181690|ENST00000316981|PLAG1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	567.331882	1132.64921	-1.5521	-0.00088054	-8.5154	-0.004831	-10.067	-0.0057116	567.3270582941328	61.755	0.92279	58.996	58.412	59.335	-2.7593	-0.069873	-0.00015746	NaN	54.776	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25121	+		36141	22244	29771	29797							0.0881915819995811
LTNTFPKSLL	10	Unmodified	_LTNTFPKSLL_					0	0	0			REV__ENSG00000181690|ENST00000316981|PLAG1	REV__ENSG00000181690|ENST00000316981|PLAG1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	567.331882	1132.64921	0.3892	0.0002208	-10.249	-0.0058147	-9.86	-0.0055939	567.3260819522345	62.658	0.87727	59.2	58.765	59.642	-3.4577	0.13382	-0.0021247	NaN	54.776	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40176	+		36142	22244	29771	29797							0.0881915819995811
LTNTQAGTRRQ	11	Unmodified	_LTNTQAGTRRQ_					0	0	0		LRP4|p.S1504Lfs*116|1|0.16|ENSG00000134569|chr11:46873172-46873172|G/-|frameshift_variant	LRP4|p.S1504Lfs*116|1|0.16|ENSG00000134569|chr11:46873172-46873172|G/-|frameshift_variant	LRP4|p.S1504Lfs*116|1|0.16|ENSG00000134569|chr11:46873172-46873172|G/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.8980712890625	3	415.893459	1244.65855	0.71891	0.00029899	0.74744	0.00031085	1.4664	0.00060985	415.8928363674408	32.772	0.19325	32.772	32.651	32.844	0					8	3	3	0	0	0	0.025682	1	1441	1441		27.554	4.1758	1	39937			36143	14802	29772	29798	39537	39537					0.046003195381899786
LTNTVVSMI	9	Unmodified	_LTNTVVSMI_					0	0	0			REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A	REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A	MSMS	OvCa99_classI_Rep5	1	489.270751953125	2	489.270435	976.526318	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.09	1	66.09	65.59	66.59	0								0	0	0	0.043559	1	6107	6107		79.451	2.6769	1		+		36144	22872	29773	29799	39538	39538					0.037115784770321625
LTNVTVVQL	9	Unmodified	_LTNVTVVQL_					0	0	0		GAPDHS|p.T259Sfs*103|1|0.07|ENSG00000105679|chr19:35543373-35543374|-/GCTTTGCAGGGCAGCCCATTCATTCATT|frameshift_variant;ENSG00000105679|ENST00000222286|GAPDHS	GAPDHS|p.T259Sfs*103|1|0.07|ENSG00000105679|chr19:35543373-35543374|-/GCTTTGCAGGGCAGCCCATTCATTCATT|frameshift_variant	GAPDHS|p.T259Sfs*103|1|0.07|ENSG00000105679|chr19:35543373-35543374|-/GCTTTGCAGGGCAGCCCATTCATTCATT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.79779052734375	2	493.797675	985.580796	-0.8922	-0.00044057	0.73935	0.00036509	-0.15285	-7.5476E-05	493.79786840620545	100.07	1.1768	97.741	97.366	98.543	-2.3253					49	22	4	0	0	0	0.12515	1	8952	8952		90.37	10.657	1	393500			36145	2490	29774	29800	39539	39539					0.08742913620108084
LTPAFPRSL	9	Unmodified	_LTPAFPRSL_					0	0	0		CTNNA1-KDM3B|1|fusion;nc|ENSG00000120733|Q7LBC6-2|KDM3B;ENSG00000120733|ENST00000314358|KDM3B	CTNNA1-KDM3B|1|fusion	CTNNA1-KDM3B|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2900390625	2	501.292559	1000.57057	-1.4695	-0.00073667	-2.6975	-0.0013522	-4.167	-0.0020889	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.63422	1	10985	10985		27.882	1.0861	1	97838			36146	693	29775	29801	39540	39540					0.07030350685522535
LTPARILVI	9	Unmodified	_LTPARILVI_					0	0	0		tr|A0A7D6VNY6|A0A7D6VNY6_9CLOTStageVsporulationproteinAEOS=ClostridiumintestinaleOX=36845GN=spoVAEPE=4SV=1	tr|A0A7D6VNY6|A0A7D6VNY6_9CLOTStageVsporulationproteinAEOS=ClostridiumintestinaleOX=36845GN=spoVAEPE=4SV=1	tr|A0A7D6VNY6|A0A7D6VNY6_9CLOTStageVsporulationproteinAEOS=ClostridiumintestinaleOX=36845GN=spoVAEPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.333984375	2	498.334227	994.653902	-0.32382	-0.00016137	-0.21052	-0.00010491	-0.53434	-0.00026628	498.334091062265	122.71	0.88941	122.49	122.12	123.01	-0.21803					72	17	5	0	0	0	0.16562	1	11925	11925		82.241	13.454	1	2870900			36147	34738	29776	29802	39541	39541					0.15636087133361798
LTPARLLL	8	Unmodified	_LTPARLLL_					0	0	0		ENST00000548760.2_1_12:98909161-98909923:-|nuORF;ENST00000546421.1_1_12:98909108-98909923:-|nuORF	ENST00000548760.2_1_12:98909161-98909923:-|nuORF	ENST00000548760.2_1_12:98909161-98909923:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	448.7997131347656	2	448.80002	895.585488	1.1656	0.00052313	-1.2994	-0.00058316	-0.13374	-6.0023E-05	448.7993403222566	118.17	1.7331	118.03	117.69	119.42	-0.14755					87	34	4	0	0	0	0.45246	1	11337	11337		82.305	8.3303	1	562320			36148	13534	29777	29803	39542	39542					0.1335184255351578
LTPDAGKKLL	10	Unmodified	_LTPDAGKKLL_					0	0	0			REV__ANKRD55|p.N379Rfs*2|1|0.04|ENSG00000164512|chr5:56111612-56111613|-/C|frameshift_variant	REV__ANKRD55|p.N379Rfs*2|1|0.04|ENSG00000164512|chr5:56111612-56111613|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.3287963867188	2	528.326599	1054.63865	0.83538	0.00044135	2.7832	0.0014704	3.6186	0.0019118	528.3278477712166	129.01	4.1824	127.56	127.15	131.33	-1.4565					215	84	4	0	0	0	0.48398	1	12439	12439		56.434	5.0983	1	383740	+		36149	15636	29778	29804	39543	39543					0.11351175545519254
LTPDTGRILSK	11	Unmodified	_LTPDTGRILSK_					0	0	0		nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF;nc|ENSG00000159352|P55036-2|PSMD4;ENSG00000159352|ENST00000368884|PSMD4;ENST00000462970.5_1_1:151227258-151237442:+|nuORF	nc|ENSG00000180764|A2A3N6|PIPSL	nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-MSMS	OvCa9_classI_Rep4_	4	400.9048767089844	3	400.903072	1199.68739	2.3868	0.00095686	-2.4054	-0.00096433	-0.018628	-7.4681E-06	400.9020627152264	83.731	1.9627	81.068	80.681	82.643	-2.6629					94	40	3	0	0	0	0.27255	1	6965	6965		70.412	11.782	1	1295400			36150	12529	29779	29805	39544	39544					0.0955304411461384
LTPDWFGNP	9	Unmodified	_LTPDWFGNP_					0	0	0		ENST00000508812.1_1_3:140993238-140993403:+|nuORF	ENST00000508812.1_1_3:140993238-140993403:+|nuORF	ENST00000508812.1_1_3:140993238-140993403:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	523.7491455078125	2	523.750724	1045.4869	0.82773	0.00043353	-3.1817	-0.0016664	-2.354	-0.0012329	523.7488803598382	131.41	0.54474	131.18	130.9	131.45	-0.22697					22	10	3	0	0	0	0.42676	1	12947	12947		49.442	7.0454	1	78376			36151	12952	29780	29806	39545	39545					-0.03402805482187432
LTPGPQLPSVN	11	Unmodified	_LTPGPQLPSVN_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.2373046875	2	561.811313	1121.60807	1.7554	0.00098622	3.1246	0.0017554	4.88	0.0027417	561.8128521368673	123.54	0.55392	123.54	123.23	123.79	0					16	11	3	0	0	0	0.025277	1	14266	14266		40.058	14.484	1	183600			36152	9229	29781	29807	39546	39546					0.05213397160468958
LTPGRCRPAEL	11	Unmodified	_LTPGRCRPAEL_					0	0	0			REV__ENST00000310160.7_1_19:49256133-49256322:-|nuORF	REV__ENST00000310160.7_1_19:49256133-49256322:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	606.8333740234375	2	606.829514	1211.64448	1.2168	0.00073836	3.6258	0.0022002	4.8425	0.0029386	606.8317229441808	88.223	2.4058	86.092	85.803	88.209	-2.1309					100	47	3	0	0	0	0.10754	1	5340	5340		88.177	0	1	3192200	+		36153	24337	29782	29808	39547	39547					0.047119507855313714
LTPILKEVL	9	Unmodified	_LTPILKEVL_					0	0	0		Tigger1_dup9834|chr14:19106484-19106883:-|1.64118294126502|0.2064126540684672|2.99|422.0|7|2|sense;Tigger1_dup11946|chr22:15828868-15829349:-|2.0143775268303656|0.126984307270513|3.99|417.0|8|2|sense	Tigger1_dup9834|chr14:19106484-19106883:-|1.64118294126502|0.2064126540684672|2.99|422.0|7|2|sense;Tigger1_dup11946|chr22:15828868-15829349:-|2.0143775268303656|0.126984307270513|3.99|417.0|8|2|sense	Tigger1_dup9834|chr14:19106484-19106883:-|1.64118294126502|0.2064126540684672|2.99|422.0|7|2|sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.3280029296875	2	513.333893	1024.65323	0.99028	0.00050835	-2.0888	-0.0010723	-1.0985	-0.00056391	513.3330200270502	68.584	1.4495	65.769	65.162	66.612	-2.8143					50	28	2	0	0	0	0.027441	1	2927	2927		58.782	5.4305	1	42803			36154	32956;32955	29783	29809	39548	39548					0.14189247693639118
LTPIRNRQE	9	Unmodified	_LTPIRNRQE_					0	0	0		sp|Q6SWA4|UL27_HCMVMProteinUL27OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL27PE=1SV=1;sp|P16763|UL27_HCMVAProteinUL27OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL27PE=3SV=1	sp|Q6SWA4|UL27_HCMVMProteinUL27OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL27PE=1SV=1	sp|Q6SWA4|UL27_HCMVMProteinUL27OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL27PE=1SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.8052978515625	2	563.820004	1125.62546	0.22676	0.00012785	1.0477	0.00059071	1.2745	0.00071857	563.8209525089558	60.372	0.24073	60.372	60.277	60.518	0					7	5	2	0	0	0	0.027462	1	5254	5254		40.778	6.6056	1	139490			36155	32896	29784	29810	39549	39549					0.0676673748612302
LTPIVPRLW	9	Unmodified	_LTPIVPRLW_					0	0	0			REV__AluSx_dup57179|chr9:129287122-129287408:+|1.561613560004613|0.1980693409042113|2.98|428.0|1|1|sense	REV__AluSx_dup57179|chr9:129287122-129287408:+|1.561613560004613|0.1980693409042113|2.98|428.0|1|1|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	547.8422241210938	2	547.839677	1093.6648	0.65277	0.00035761	3.8336	0.0021002	4.4864	0.0024578	547.8416503303802	71.419	3.1748	68.911	67.929	71.104	-2.5071					123	60	3	0	0	0	0.5811	1	5745	5745		34.173	5.023	1	1272400	+		36156	15610	29785	29811	39550	39550					0.12171489507659317
LTPKGRVTFK	10	Unmodified	_LTPKGRVTFK_					0	0	0			REV__ENSG00000106304|ENST00000682466|SPAM1	REV__ENSG00000106304|ENST00000682466|SPAM1	MSMS	OvCa99_classI_Rep5	1	573.854736328125	2	573.853316	1145.69208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	164.66	1	164.66	164.16	165.16	0								0	0	0	0.1451	1	19189	19189		17.468	1.8262	1		+		36157	17792	29786	29812	39551	39551					0.12505973048041596
LTPKGRVVPV	10	Unmodified	_LTPKGRVVPV_					0	0	0			REV__ENST00000522079.5_1_8:136569738-136660819:+|nuORF	REV__ENST00000522079.5_1_8:136569738-136660819:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	533.3402709960938	2	533.342584	1064.67061	-5.4005	-0.0028803	1.293	0.00068962	-4.1075	-0.0021907	533.3431631989303	156.44	1.0857	156.21	155.92	157	-0.22696					71	26	4	0	0	0	0.79213	1	15933	15933		19.997	1.6724	1	260540	+		36158	19032	29787	29813	39552	39552					0.1408658801931324
LTPKIQDLK	9	Unmodified	_LTPKIQDLK_					0	0	0		ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;ENST00000528173.5_1_11:46391373-46400221:+|nuORF;nc|ENSG00000149091|Q13574-6|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;nc|ENSG00000149091|Q13574-1|DGKZ	ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-1|DGKZ	ENSG00000149091|ENST00000456247|DGKZ	MULTI-MSMS	OvCa9_classI_Rep2	2	528.3291625976562	2	528.326599	1054.63865	0.61734	0.00032616	2.9706	0.0015694	3.5879	0.0018956	528.3279822328798	127.76	3.0131	127.54	127.09	130.11	-0.22697					168	60	4	0	0	0	0.56189	1	12543	12543		36.447	0.82846	1	313700			36159	5440;15083	29788	29814	39553	39553					0.11351175545519254
LTPKKPKPK	9	Unmodified	_LTPKKPKPK_					0	0	0			REV__nc|ENSG00000077713|Q8WUT9-2|SLC25A43	REV__nc|ENSG00000077713|Q8WUT9-2|SLC25A43	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.8114624023438	2	518.847502	1035.68045	0.003099	1.6079E-06	2.5874	0.0013425	2.5905	0.0013441	518.848968303658	88.666	0.14524	86.535	86.461	86.607	-2.1309					4	2	2	0	0	0	0.027462	1	5398	5398		27.882	0	1	12932	+		36160	17014	29789	29815	39554	39554					0.16403776024685612
LTPLAARWGP	10	Unmodified	_LTPLAARWGP_					0	0	0		ENSG00000167178|ENST00000453268|ISLR2	ENSG00000167178|ENST00000453268|ISLR2	ENSG00000167178|ENST00000453268|ISLR2	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.8306274414062	2	541.311284	1080.60801	1.9647	0.0010635	-1.0823	-0.00058586	0.88235	0.00047762	541.3106678088765	124.56	0.51994	123.51	123.33	123.84	-1.0519					11	9	2	0	0	0	0.02661	1	9640	9640		49.442	1.7842	1	17490			36161	6765	29790	29816	39555	39555					0.07093441951133173
LTPPNNKPIL	10	Unmodified	_LTPPNNKPIL_					0	0	0			REV__ENSG00000134602|ENST00000394334|STK26;REV__ENSG00000102572|ENST00000539966|STK24	REV__ENSG00000134602|ENST00000394334|STK26	MULTI-MSMS	OvCa9_classI_Rep2	2	553.82958984375	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.762	1	14247	14247		23.523	0	1	245610	+		36162	19215;17563	29791	29817	39556	39556					0.10094577919812764
LTPPSPARKS	10	Unmodified	_LTPPSPARKS_					0	0	0			REV__ENST00000589518.1_1_17:43324750-43325174:-|nuORF	REV__ENST00000589518.1_1_17:43324750-43325174:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.3056640625	2	527.306198	1052.59784	-1.933	-0.0010193	1.4773	0.00077899	-0.45574	-0.00024031	527.3069587368061	50.572	1.8871	47.399	46.839	48.726	-3.1734					93	36	5	0	0	0	0.55109	1	2930	2930		47.96	2.0076	1	707160	+		36163	27908	29792	29818	39557	39557					0.07364834225904815
LTPPSPARKS	10	Unmodified	_LTPPSPARKS_					0	0	0			REV__ENST00000589518.1_1_17:43324750-43325174:-|nuORF	REV__ENST00000589518.1_1_17:43324750-43325174:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	527.306198	1052.59784	-1.4176	-0.00074753	1.4357	0.00075705	0.018056	9.5211E-06	527.3067923798156	50.241	1.5875	47.447	47.033	48.62	-2.794	0.024174	-3.2862E-05	NaN	47.96	68	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164420	+		36164	27908	29792	29818							0.07364834225904815
LTPPTILK	8	Unmodified	_LTPPTILK_					0	0	0		ENSG00000251322|ENST00000262795|SHANK3;nc|ENSG00000251322|Q9BYB0-3|SHANK3;ENST00000414786.6_1_22:51113069-51169737:+|nuORF;nc|ENSG00000251322|Q9BYB0|SHANK3	ENSG00000251322|ENST00000262795|SHANK3	ENSG00000251322|ENST00000262795|SHANK3	MULTI-MSMS	OvCa9_classI_Rep3	3	441.7861328125	2	441.786579	881.558604	0.18106	7.9989E-05	-0.39547	-0.00017472	-0.21442	-9.4727E-05	441.7862824031042	103.07	1.1527	101.55	101	102.15	-1.5211					53	21	3	0	0	0	0.56195	1	7129	7129		71.296	0	1	261390			36165	9422	29793	29819	39558	39558					0.11308733942337312
LTPPTILK	8	Unmodified	_LTPPTILK_					0	0	0		ENSG00000251322|ENST00000262795|SHANK3;nc|ENSG00000251322|Q9BYB0-3|SHANK3;ENST00000414786.6_1_22:51113069-51169737:+|nuORF;nc|ENSG00000251322|Q9BYB0|SHANK3	ENSG00000251322|ENST00000262795|SHANK3	ENSG00000251322|ENST00000262795|SHANK3	MULTI-MSMS	OvCa9_classI_Rep4_	4	441.7861022949219	2	441.786579	881.558604	-0.74101	-0.00032737	1.0571	0.00046702	0.3161	0.00013965	441.7869021522378	103.79	1.0456	101.67	101.17	102.22	-2.1192					47	19	3	0	0	0	0.50674	1	9390	9390		76.847	11.043	1	263040			36166	9422	29793	29819	39559	39559					0.11308733942337312
LTPQHLNVI	9	Unmodified	_LTPQHLNVI_					0	0	0		ENSG00000010322|ENST00000345716|NISCH;nc|ENSG00000010322|Q9Y2I1-2|NISCH;ENST00000489895.5_1_3:52514938-52524786:+|nuORF	ENSG00000010322|ENST00000345716|NISCH;ENST00000489895.5_1_3:52514938-52524786:+|nuORF	ENSG00000010322|ENST00000345716|NISCH	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.2809448242188	2	517.803291	1033.59203	-0.56319	-0.00029162	1.1352	0.00058782	0.57202	0.0002962	517.8035957547232	69.421	0.61042	69.421	69.145	69.756	0					24	14	2	0	0	0	0.027462	1	6572	6572		19.997	0	1	348410			36167	944;12688	29794	29820	39560	39560					0.07657735714224145
LTPQHLNVI	9	Unmodified	_LTPQHLNVI_					0	0	0		ENSG00000010322|ENST00000345716|NISCH;nc|ENSG00000010322|Q9Y2I1-2|NISCH;ENST00000489895.5_1_3:52514938-52524786:+|nuORF	ENSG00000010322|ENST00000345716|NISCH;ENST00000489895.5_1_3:52514938-52524786:+|nuORF	ENSG00000010322|ENST00000345716|NISCH	MULTI-MATCH	OvCa9_classI_Rep2	2		2	517.803291	1033.59203	0.61646	0.00031921	6.3522	0.0032892	6.9687	0.0036084	517.8063566733546	71.806	1.7223	69.298	68.91	70.632	-2.5072	-0.095182	0.00090692	NaN	26.693	67	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	358780			36168	944;12688	29794	29820							0.07657735714224145
LTPQHLNVI	9	Unmodified	_LTPQHLNVI_					0	0	0		ENSG00000010322|ENST00000345716|NISCH;nc|ENSG00000010322|Q9Y2I1-2|NISCH;ENST00000489895.5_1_3:52514938-52524786:+|nuORF	ENSG00000010322|ENST00000345716|NISCH;ENST00000489895.5_1_3:52514938-52524786:+|nuORF	ENSG00000010322|ENST00000345716|NISCH	MULTI-MATCH	OvCa9_classI_Rep3	3		2	517.803291	1033.59203	0.70455	0.00036482	6.0051	0.0031094	6.7096	0.0034743	517.8063390925631	72.064	1.6292	69.462	69.032	70.661	-2.6023	0.067938	0.00054744	NaN	26.693	72	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100440			36169	944;12688	29794	29820							0.07657735714224145
LTPQSHQIN	9	Unmodified	_LTPQSHQIN_					0	0	0			REV__chr12:51240083-51240343|108|21.7|0.98|4.47|+|0|None,DAZAP2|1	REV__chr12:51240083-51240343|108|21.7|0.98|4.47|+|0|None,DAZAP2|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.31689453125	2	519.272355	1036.53016	0.26434	0.00013726	3.5566	0.0018468	3.8209	0.0019841	519.2740264393818	93.328	1.9168	92.16	91.129	93.046	-1.168					65	36	3	0	0	0	0.027447	1	8313	8313		56.721	12.344	1	98598	+		36170	15882	29795	29821	39561	39561					0.013353842950891703
LTPRKRVKWEI	11	Unmodified	_LTPRKRVKWEI_					0	0	0			REV__tr|A0A553SLV0|A0A553SLV0_NIACIAmmoniumtransporterOS=NialliacirculansOX=1397GN=CEQ21_21390PE=3SV=1	REV__tr|A0A553SLV0|A0A553SLV0_NIACIAmmoniumtransporterOS=NialliacirculansOX=1397GN=CEQ21_21390PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	475.9626770019531	3	475.961144	1424.8616	0.8114	0.00038619	-0.070942	-3.3766E-05	0.74046	0.00035243	475.961087785801	103.28	1.5158	103.28	102.93	104.45	0					104	35	5	0	0	0	0.71582	1	11581	11581		24.232	7.702	1	5443300	+		36171	30267	29796	29822	39562	39562					0.16616669330619516
LTPSFLTSR	9	Unmodified	_LTPSFLTSR_					0	0	0		tr|A0A553SHF9|A0A553SHF9_NIACIStageIIsporulationproteinEOS=NialliacirculansOX=1397GN=spoIIEPE=4SV=1	tr|A0A553SHF9|A0A553SHF9_NIACIStageIIsporulationproteinEOS=NialliacirculansOX=1397GN=spoIIEPE=4SV=1	tr|A0A553SHF9|A0A553SHF9_NIACIStageIIsporulationproteinEOS=NialliacirculansOX=1397GN=spoIIEPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.2717895507812	2	511.287474	1020.5604	1.3152	0.00067245	-2.8323	-0.0014481	-1.5171	-0.00077566	511.28587604066655	143.83	0.79289	143.83	143.27	144.06	0					22	15	2	0	0	0	0.027453	1	16814	16814		37.812	3.639	1	80422			36172	33267	29797	29823	39563	39563					0.05093742960286818
LTPTLPIRKE	10	Unmodified	_LTPTLPIRKE_					0	0	0			REV__ENST00000558939.5_1_15:70341027-70341300:-|nuORF	REV__ENST00000558939.5_1_15:70341027-70341300:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3563842773438	2	584.358431	1166.70231	-0.5033	-0.0002941	-2.654	-0.0015509	-3.1573	-0.001845	584.3567763295431	142.42	4.015	140.98	138.81	142.83	-1.4427					242	77	4	0	0	0	0.70152	1	14024	14024		30.318	3.2704	1	214670	+		36173	27590	29798	29824	39564	39564					0.12562535982578993
LTPTRAQL	8	Unmodified	_LTPTRAQL_					0	0	0			REV__NES|p.V1249Gfs*6|1|0.06|ENSG00000132688|chr1:156670442-156670443|-/C|frameshift_variant	REV__NES|p.V1249Gfs*6|1|0.06|ENSG00000132688|chr1:156670442-156670443|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	450.2680358886719	2	450.269084	898.523616	3.0447	0.0013709	-2.8004	-0.001261	0.24425	0.00010998	450.2677429361468	71.284	1.9614	68.777	67.576	69.537	-2.5071					97	37	4	0	0	0	0.45246	1	5740	5740		82.305	2.3658	1	619310	+		36174	19096	29799	29825	39565	39565					0.07029491134358068
LTPVVLRPEI	10	Unmodified	_LTPVVLRPEI_					0	0	0		nc|ENSG00000132906|P55211-3|CASP9;nc|ENSG00000132906|P55211-2|CASP9;CASP9|p.R193Pfs*113|1|0.04|ENSG00000132906|chr1:15506951-15506952|-/CAAGGGTGTTTTGGACACAAGAAGG|frameshift_variant;nc|ENSG00000132906|P55211-4|CASP9;ENSG00000132906|ENST00000333868|CASP9	nc|ENSG00000132906|P55211-3|CASP9	nc|ENSG00000132906|P55211-3|CASP9	MULTI-MSMS	OvCa9_classI_Rep3	3	568.8525390625	2	568.855524	1135.69649	-7.0365	-0.0040027	3.4991	0.0019905	-3.5374	-0.0020123	568.857375140279	161.4	1.8223	160.03	159.69	161.51	-1.3692					107	37	5	0	0	0	0.75313	1	14087	14087		24.519	1.4767	1	827460			36175	185	29800	29826	39566	39566					0.1340743747093711
LTQCKKALL	9	Unmodified	_LTQCKKALL_					0	0	0			REV__nc|ENSG00000183091|P20929-4|NEB	REV__nc|ENSG00000183091|P20929-4|NEB	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.30810546875	2	509.309895	1016.60524	0.47753	0.00024321	-3.9766	-0.0020253	-3.4991	-0.0017821	509.3077167329326	110.81	0.84142	109.2	108.91	109.75	-1.6011					41	15	3	0	0	0	0.37135	1	10216	10216		54.776	1.4249	1	186070	+		36176	22341	29801	29827	39567	39567					0.09759850501961864
LTQFLRFK	8	Unmodified	_LTQFLRFK_					0	0	0			REV__nc|ENSG00000226807|Q6ZUA9|MROH5	REV__nc|ENSG00000226807|Q6ZUA9|MROH5	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.7938232421875	2	526.816202	1051.61785	-0.42781	-0.00022537	1.0455	0.00055081	0.61773	0.00032543	527.3191818646425	104.83	0.21388	104.83	104.7	104.91	0					6	4	2	0	0	0	0.028476	1	11771	11771		23.042	0	1	99673	+		36177	29142	29802	29828	39568	39568					0.09410629956505545
LTQHQHPHS	9	Unmodified	_LTQHQHPHS_					0	0	0			REV__nc|ENSG00000146592|Q02930-4|CREB5	REV__nc|ENSG00000146592|Q02930-4|CREB5	MULTI-MSMS	OvCa99_classI_Rep5	1	542.7675170898438	2	542.767771	1083.52099	1.233	0.00066923	1.067	0.00057913	2.3	0.0012484	542.7681458537472	143.89	0.98253	143.89	143.61	144.6	0					34	19	3	0	0	0	0.40667	1	16829	16829		51.335	3.4199	1	93937	+		36178	20024	29803	29829	39569	39569					-0.017429642705792503
LTQILESAF	9	Unmodified	_LTQILESAF_					0	0	0		nc|ENSG00000111785|Q9NVN3|RIC8B;nc|ENSG00000111785|Q9NVN3-1|RIC8B;ENSG00000111785|ENST00000392837|RIC8B;nc|ENSG00000111785|Q9NVN3-3|RIC8B	nc|ENSG00000111785|Q9NVN3|RIC8B	nc|ENSG00000111785|Q9NVN3|RIC8B	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.3619079589844	2	511.281857	1020.54916	0.92104	0.00047091	-0.33602	-0.0001718	0.58502	0.00029911	511.2815017952643	151.38	0.40884	151.38	151.09	151.5	0					13	7	2	0	0	0	0.027462	1	17703	17703		29.15	8.2026	1	21572			36179	2852	29804	29830	39570	39570					0.03970920866140659
LTQLVRET	8	Unmodified	_LTQLVRET_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.2513732910156	2	480.279649	958.544745	-0.45594	-0.00021898	0.018573	8.9202E-06	-0.43736	-0.00021006	480.2795510151114	42.431	0.98605	42.431	42.199	43.185	0					47	22	4	0	0	0	0.028476	1	2828	2828		29.15	0	1	2695400	+		36180	22219	29805	29831	39571	39571					0.06381456443239131
LTQMTAPPD	9	Unmodified	_LTQMTAPPD_					0	0	0		ENSG00000204406|ENST00000642680|MBD5	ENSG00000204406|ENST00000642680|MBD5	ENSG00000204406|ENST00000642680|MBD5	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.2814025878906	2	487.236593	972.458632	0.46532	0.00022672	-1.7702	-0.00086251	-1.3049	-0.00063578	487.23580571691843	96.628	0.7373	95.669	95.331	96.068	-0.95857					26	14	3	0	0	0	0.027447	1	8739	8739		56.721	23.205	1	39805			36181	8982	29806	29832	39572	39572					-0.02869871453799533
LTQMTAPPD	9	Unmodified	_LTQMTAPPD_					0	0	0		ENSG00000204406|ENST00000642680|MBD5	ENSG00000204406|ENST00000642680|MBD5	ENSG00000204406|ENST00000642680|MBD5	MULTI-SECPEP	OvCa9_classI_Rep3	3	487.282470703125	2	487.236593	972.458632	-1.0746	-0.00052359	-1.167	-0.00056861	-2.2416	-0.0010922	487.2359204038936	97.279	0.70155	95.519	95.26	95.962	-1.7595					28	13	3	0	0	0	0.027462	1	6460	6460		42.396	11.892	1	47516			36182	8982	29806	29832	39573	39573					-0.02869871453799533
LTQNCVCVT	9	Unmodified	_LTQNCVCVT_					0	0	0			REV__nc|ENSG00000188162|Q6ZRI0|OTOG	REV__nc|ENSG00000188162|Q6ZRI0|OTOG	MULTI-MSMS	OvCa99_classI_Rep5	1	490.73095703125	2	490.73062	979.446687	-0.9505	-0.00046644	0.46673	0.00022904	-0.48377	-0.0002374	490.730712521307	44.373	0.71626	44.373	44.123	44.84	0					34	15	3	0	0	0	0.35694	1	2990	2990		56.434	3.0823	1	1510600	+		36183	22697	29807	29833	39574	39574					-0.043858114686372573
LTQQHEEPEV	10	Unmodified	_LTQQHEEPEV_					0	0	0			REV__ENSG00000092929|ENST00000207549|UNC13D	REV__ENSG00000092929|ENST00000207549|UNC13D	MULTI-SECPEP	OvCa99_classI_Rep5	1	605.370849609375	2	605.290942	1208.56733	2.0061	0.0012143	0.49471	0.00029944	2.5008	0.0015137	605.2911643003332	126.3	0.42524	126.3	126.09	126.51	0					14	8	2	0	0	0	0.02676	1	14577	14577		41.427	26.562	1	47607	+		36184	17271	29808	29834	39575	39575					-0.028609889498056873
LTQSRAKVSML	11	Unmodified	_LTQSRAKVSML_					0	0	0		nc|ENSG00000122483|Q5T9S5|CCDC18;ENSG00000122483|ENST00000690025|CCDC18;nc|ENSG00000122483|Q5T9S5-2|CCDC18	nc|ENSG00000122483|Q5T9S5|CCDC18	nc|ENSG00000122483|Q5T9S5|CCDC18	MULTI-MSMS	OvCa9_classI_Rep4_	4	617.3508911132812	2	617.352822	1232.69109	-3.3769	-0.0020847	-1.1686	-0.00072141	-4.5455	-0.0028062	617.35192186902	152.13	1.4228	150.69	150.33	151.75	-1.435					86	30	4	0	0	0	0.7046	1	15114	15114		28.081	3.5623	1	233800			36185	3535	29809	29835	39576	39576					0.0840539061682648
LTQTGKQPLLL	11	Unmodified	_LTQTGKQPLLL_					0	0	0			REV__ENST00000497660.5_1_1:8390216-8404070:+|nuORF	REV__ENST00000497660.5_1_1:8390216-8404070:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3699340820312	2	606.371538	1210.72852	-2.0217	-0.0012259	-1.2081	-0.00073258	-3.2298	-0.0019585	606.3706888805716	149.57	2.6994	148.14	147.52	150.22	-1.4344					165	58	4	0	0	0	0.71191	1	14738	14738		25.574	1.0549	1	304910	+		36186	26782	29810	29836	39577	39577					0.13158805154080255
LTQVAKEAL	9	Unmodified	_LTQVAKEAL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OvCa9_classI_Rep2	2	486.78955078125	2	486.78985	971.565146	1.2618	0.00061424	-1.4429	-0.00070237	-0.18104	-8.8126E-05	486.78904955959166	128.1	0.78879	127.87	127.59	128.38	-0.22696					27	15	2	0	0	0	0.26076	1	12547	12547		67.494	12.717	1	60511			36187	5793	29811	29837	39578	39578					0.07822627103041668
LTQVAKEAL	9	Unmodified	_LTQVAKEAL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	486.78985	971.565146	1.2441	0.00060563	-1.6395	-0.00079807	-0.39533	-0.00019244	486.78901485022004	129.19	1.2356	127.74	127.4	128.63	-1.4565	-0.069457	-0.00039881	NaN	67.494	41	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75838			36188	5793	29811	29837							0.07822627103041668
LTQVHIINI	9	Unmodified	_LTQVHIINI_					0	0	0			REV__nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	REV__nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	MULTI-MSMS	OvCa9_classI_Rep2	2	525.8171997070312	2	525.818941	1049.62333	-0.034605	-1.8196E-05	-0.18638	-9.8E-05	-0.22098	-0.0001162	525.8186752814286	93.147	1.4956	91.979	91.55	93.046	-1.168					63	28	4	0	0	0	0.34132	1	8299	8299		58.23	3.4536	1	591320	+		36189	17463	29812	29838	39579	39579					0.10050308748327552
LTQVPQVLN	9	Unmodified	_LTQVPQVLN_					0	0	0		ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.3417663574219	2	506.295299	1010.57605	-1.2109	-0.00061309	-1.7704	-0.00089635	-2.9813	-0.0015094	506.296636262558	134.8	0.14835	133.68	133.55	133.7	-1.1226					4	2	2	0	0	0	0.027461	1	10874	10874		49.442	7.0454	1	4243.2			36190	8412	29813	29839	39580	39580					0.07118029477328491
LTQYSAKDI	9	Unmodified	_LTQYSAKDI_					0	0	0		nc|ENSG00000277363|Q9C0H9-2|SRCIN1;ENSG00000277363|ENST00000617146|SRCIN1	nc|ENSG00000277363|Q9C0H9-2|SRCIN1	nc|ENSG00000277363|Q9C0H9-2|SRCIN1	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.7966918945312	2	519.776939	1037.53933	0.46612	0.00024228	4.3434	0.0022576	4.8095	0.0024999	519.7785102722596	79.959	0.60266	77.619	77.309	77.912	-2.3399					21	11	3	0	0	0	0.027432	1	4368	4368		41.427	4.9799	1	71773			36191	9583	29814	29840	39581	39581					0.022057328607616
LTRAAQPFFP	10	Unmodified	_LTRAAQPFFP_					0	0	0			REV__nc|ENSG00000166317|Q9H987-2|SYNPO2L	REV__nc|ENSG00000166317|Q9H987-2|SYNPO2L	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.3394775390625	2	574.316566	1146.61858	0.075402	4.3305E-05	-1.2611	-0.00072426	-1.1857	-0.00068095	574.316077066785	71.888	0.57855	71.888	71.629	72.208	0					31	13	3	0	0	0	0.026606	1	6966	6966		44.377	6.5657	1	554920	+		36192	21176	29815	29841	39582	39582					0.05113424605565342
LTRAFKALL	9	Unmodified	_LTRAFKALL_					0	0	0		ENST00000337318.7_2_10:126310348-126310615:-|nuORF	ENST00000337318.7_2_10:126310348-126310615:-|nuORF	ENST00000337318.7_2_10:126310348-126310615:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	516.2725830078125	2	516.831852	1031.64915	0.39453	0.00020391	-0.69905	-0.00036129	-0.30452	-0.00015738	516.8313873052126	78.565	1.5484	76.212	75.85	77.399	-2.3527					46	30	3	0	0	0	0.027462	1	4297	4297		56.721	24.766	1	48935			36193	10522	29816	29842	39583	39583					0.1345920299061163
LTRAFKALL	9	Unmodified	_LTRAFKALL_					0	0	0		ENST00000337318.7_2_10:126310348-126310615:-|nuORF	ENST00000337318.7_2_10:126310348-126310615:-|nuORF	ENST00000337318.7_2_10:126310348-126310615:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	516.831852	1031.64915	-0.4404	-0.00022761	-0.80859	-0.00041791	-1.249	-0.00064552	516.8313015895052	79.182	1.0946	76.431	76.085	77.179	-2.7514	0.1073	-0.00027126	NaN	56.721	34	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48246			36194	10522	29816	29842							0.1345920299061163
LTRAPNILI	9	Unmodified	_LTRAPNILI_					0	0	0			REV__ENST00000520836.5_1_5:169174421-169268422:+|nuORF	REV__ENST00000520836.5_1_5:169174421-169268422:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	505.8210754394531	2	505.821484	1009.62842	-0.26405	-0.00013356	0.17901	9.0545E-05	-0.085044	-4.3017E-05	505.8212974037825	110.2	1.3347	110.03	109.61	110.95	-0.17237					45	26	2	0	0	0	0.44568	1	10381	10381		47.657	11.211	1	153320	+		36195	27063	29817	29843	39584	39584					0.12398612610945747
LTRAPNILI	9	Unmodified	_LTRAPNILI_					0	0	0			REV__ENST00000520836.5_1_5:169174421-169268422:+|nuORF	REV__ENST00000520836.5_1_5:169174421-169268422:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	505.821484	1009.62842	0.64646	0.00032699	-0.45165	-0.00022845	0.19481	9.8539E-05	505.82071713422636	111.21	1.5451	110.11	109.55	111.09	-1.1038	-0.02216	-0.00050256	NaN	47.657	67	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152220	+		36196	27063	29817	29843							0.12398612610945747
LTRCLTKW	8	Unmodified	_LTRCLTKW_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|80|2|sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|80|2|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.8034973144531	2	510.786587	1019.55862	2.6795	0.0013687	3.3902	0.0017317	6.0697	0.0031003	510.78825431183117	135.18	1.0379	133.63	133.36	134.4	-1.5437					33	20	2	0	0	0	0.028476	1	13136	13136		26.796	1.3459	1	40447	+		36197	28488	29818	29844	39585	39585					0.04962410670657391
LTREIEEKSR	10	Unmodified	_LTREIEEKSR_					0	0	0			REV__tr|A0A7D6ZZI2|A0A7D6ZZI2_9CLOTV-typeATPasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_06125PE=4SV=1	REV__tr|A0A7D6ZZI2|A0A7D6ZZI2_9CLOTV-typeATPasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_06125PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	631.831298828125	2	630.848958	1259.68336	-0.43125	-0.00027205	3.947	0.00249	3.5157	0.0022179	630.8507297703981	96.325	0.55673	94.496	94.271	94.827	-1.8286					16	10	2	0	0	0	0.026826	1	6360	6360		36.447	6.129	1	58632	+		36198	32411	29819	29845	39586	39586					0.06390954620883349
LTREKNQLE	9	Unmodified	_LTREKNQLE_					0	0	0		ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MULTI-MSMS	OvCa9_classI_Rep3	3	565.813720703125	2	565.811845	1129.60914	-0.45503	-0.00025746	3.7527	0.0021233	3.2976	0.0018658	565.8138361081482	73.998	1.4248	71.511	71.225	72.65	-2.4873					64	28	3	0	0	0	0.28934	1	3638	3638		64.207	4.089	1	458810			36199	4421	29820	29846	39587	39587					0.04951611529349975
LTRFLNHET	9	Unmodified	_LTRFLNHET_					0	0	0			REV__tr|A0A7D6ZHP0|A0A7D6ZHP0_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03685PE=4SV=1	REV__tr|A0A7D6ZHP0|A0A7D6ZHP0_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03685PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	565.799072265625	2	565.80128	1129.58801	-2.4631	-0.0013936	-1.339	-0.00075759	-3.802	-0.0021512	565.8004097051485	35.939	0.94262	33.229	32.95	33.893	-2.7097					48	18	4	0	0	0	0.44568	1	1492	1492		47.657	1.6851	1	164810	+		36200	32033	29821	29847	39588	39588					0.02839646220513714
LTRFSTKV	8	Unmodified	_LTRFSTKV_					0	0	0		Harlequin-int_dup372|chr10:84170027-84170994:-|2.0484706391337646|0.252139802420439|3.02|427.0|17|2|sense	Harlequin-int_dup372|chr10:84170027-84170994:-|2.0484706391337646|0.252139802420439|3.02|427.0|17|2|sense	Harlequin-int_dup372|chr10:84170027-84170994:-|2.0484706391337646|0.252139802420439|3.02|427.0|17|2|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.23956298828125	2	476.284734	950.554916	1.7439	0.0008306	-0.84423	-0.00040209	0.8997	0.00042851	476.2842419202567	85.6	1.0826	82.954	82.561	83.643	-2.6463					40	21	3	0	0	0	0.028476	1	7161	7161		40.573	1.7665	1	70244			36201	14380	29822	29848	39589	39589					0.07766064168481535
LTRFSTKV	8	Unmodified	_LTRFSTKV_					0	0	0		Harlequin-int_dup372|chr10:84170027-84170994:-|2.0484706391337646|0.252139802420439|3.02|427.0|17|2|sense	Harlequin-int_dup372|chr10:84170027-84170994:-|2.0484706391337646|0.252139802420439|3.02|427.0|17|2|sense	Harlequin-int_dup372|chr10:84170027-84170994:-|2.0484706391337646|0.252139802420439|3.02|427.0|17|2|sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	476.284734	950.554916	-1.3585	-0.00064705	1.8249	0.00086916	0.46635	0.00022211	476.2854754462994	84.346	0.96008	82.799	82.588	83.548	-1.5462	-0.1473	0.0009587	NaN	45.952	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56708			36202	14380	29822	29848							0.07766064168481535
LTRFSTKV	8	Unmodified	_LTRFSTKV_					0	0	0		Harlequin-int_dup372|chr10:84170027-84170994:-|2.0484706391337646|0.252139802420439|3.02|427.0|17|2|sense	Harlequin-int_dup372|chr10:84170027-84170994:-|2.0484706391337646|0.252139802420439|3.02|427.0|17|2|sense	Harlequin-int_dup372|chr10:84170027-84170994:-|2.0484706391337646|0.252139802420439|3.02|427.0|17|2|sense	MULTI-MATCH	OvCa9_classI_Rep3	3		2	476.284734	950.554916	-0.26862	-0.00012794	0.25974	0.00012371	-0.0088842	-4.2314E-06	476.2846263121394	85.307	1.2883	83.087	82.648	83.936	-2.2204	0.14039	-0.0005322	NaN	45.952	45	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113990			36203	14380	29822	29848							0.07766064168481535
LTRGKKFLP	9	Unmodified	_LTRGKKFLP_					0	0	0			REV__ENST00000371856.6_1_20:47782790-47790762:-|nuORF	REV__ENST00000371856.6_1_20:47782790-47790762:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.3289184570312	2	530.337301	1058.66005	1.3414	0.00071139	0.95376	0.00050582	2.2952	0.0012172	530.3377409011657	80.893	0.50297	80.893	80.659	81.162	0					24	11	3	0	0	0	0.027462	1	8288	8288		51.335	5.3835	1	501510	+		36204	24989	29823	29849	39590	39590					0.13306605364869029
LTRHGLYEKK	10	Unmodified	_LTRHGLYEKK_					0	0	0		ENST00000468051.1_1_18:23679034-23679187:+|nuORF	ENST00000468051.1_1_18:23679034-23679187:+|nuORF	ENST00000468051.1_1_18:23679034-23679187:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	416.25115966796875	3	415.575178	1243.70371	0.15231	6.3296E-05	0.17295	7.1872E-05	0.32526	0.00013517	415.5753648879616	64.21	0.29337	60.735	60.539	60.833	-3.475					9	5	2	0	0	0	0.027035	1	4565	4565		36.318	8.6737	1	9351.7			36205	12320	29824	29850	39591	39591					0.09160170071345419
LTRKDGPL	8	Unmodified	_LTRKDGPL_					0	0	0		tr|A0A553SFC0|A0A553SFC0_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08585PE=4SV=1	tr|A0A553SFC0|A0A553SFC0_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08585PE=4SV=1	tr|A0A553SFC0|A0A553SFC0_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08585PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	450.26800537109375	2	450.269084	898.523616	3.0447	0.0013709	-2.8004	-0.001261	0.24425	0.00010998	450.2677429361468	71.284	1.9614	68.777	67.576	69.537	-2.5071					97	37	4	0	0	0	0.38598	1	5748	5748		90.777	2.1338	1	619310			36206	33022	29825	29851	39592	39592					0.07029491134380805
LTRLPALL	8	Unmodified	_LTRLPALL_					0	0	0			REV__COL6A3|p.K1001Nfs*34|1|0.23|ENSG00000163359|chr2:237376800-237376839|TTTTAAGAGATTCACTATCTGTGGATGAAGATCTCCAATC/-|frameshift_variant	REV__COL6A3|p.K1001Nfs*34|1|0.23|ENSG00000163359|chr2:237376800-237376839|TTTTAAGAGATTCACTATCTGTGGATGAAGATCTCCAATC/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	448.8001708984375	2	448.80002	895.585488	0.73618	0.0003304	-0.70585	-0.00031678	0.030333	1.3614E-05	448.7995819385941	119.43	1.6759	118.4	117.98	119.66	-1.0271					86	33	4	0	0	0	0.53531	1	9070	9070		73.975	2.679	1	762460	+		36207	16165	29826	29852	39593	39593					0.1335184255351578
LTRLRKQAL	9	Unmodified	_LTRLRKQAL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.8150634765625	2	549.858932	1097.70331	0.20367	0.00011199	-2.1944	-0.0012066	-1.9908	-0.0010946	549.8576077545598	66.999	0.74035	63.509	63.198	63.938	-3.4902					19	14	2	0	0	0	0.027448	1	4907	4907		27.882	0	1	22612			36208	3083	29827	29853	39594	39594					0.15836795142172377
LTRMIHIL	8	Unmodified	_LTRMIHIL_					0	0	0		MED16-POLR2E|1|fusion;nc|ENSG00000175221|Q9Y2X0-5|MED16;nc|ENSG00000175221|Q9Y2X0-4|MED16;nc|ENSG00000175221|Q9Y2X0-2|MED16;nc|ENSG00000175221|Q9Y2X0-3|MED16;ENSG00000175221|ENST00000325464|MED16	MED16-POLR2E|1|fusion	MED16-POLR2E|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.78973388671875	2	498.80478	995.595007	-0.60274	-0.00030065	1.196	0.00059655	0.59322	0.0002959	498.80496383201756	115.27	0.34529	115.15	114.95	115.29	-0.11777					11	6	2	0	0	0	0.028476	1	10971	10971		50.025	0	1	29982			36209	7527	29828	29854	39595	39595					0.09703287567390362
LTRNAPVGT	9	Unmodified	_LTRNAPVGT_					0	0	0			REV__nc|ENSG00000144452|Q86UK0-2|ABCA12	REV__nc|ENSG00000144452|Q86UK0-2|ABCA12	MULTI-MSMS	OvCa9_classI_Rep4_	4	464.7654113769531	2	464.764166	927.513779	-1.1098	-0.00051579	1.2368	0.00057484	0.12707	5.9058E-05	464.7646250571224	53.738	1.0731	50.491	50.161	51.234	-3.2474					37	20	2	0	0	0	0.51865	1	3299	3299		40.778	0.71999	1	257470	+		36210	19912	29829	29855	39596	39596					0.047123031289856954
LTRNEHLTI	9	Unmodified	_LTRNEHLTI_					0	0	0			REV__ENSG00000101825|ENST00000217939|MXRA5	REV__ENSG00000101825|ENST00000217939|MXRA5	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.7603759765625	2	548.809105	1095.60366	-1.0645	-0.0005842	1.1053	0.00060662	0.040869	2.2429E-05	548.8091104571009	70.255	0.60464	70.255	69.883	70.488	0					22	14	2	0	0	0	0.02744	1	6751	6751		52.937	0	1	656920	+		36211	17519	29830	29856	39597	39597					0.059679327375761204
LTRPGRRGGG	10	Unmodified	_LTRPGRRGGG_					0	0	0		ENST00000420190.6_3_1:859345-859660:+|nuORF	ENST00000420190.6_3_1:859345-859660:+|nuORF	ENST00000420190.6_3_1:859345-859660:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	512.8133544921875	2	513.799406	1025.58426	0.50903	0.00026154	1.6707	0.00085842	2.1798	0.00112	513.8002270523318	81.941	1.092	80.292	79.869	80.961	-1.6485					31	20	2	0	0	0	0.027056	1	6955	6955		20.947	0.95016	1	23093			36212	11666	29831	29857	39598	39598					0.07249021237339548
LTRPGSSSL	9	Unmodified	_LTRPGSSSL_					0	0	0		ENSG00000169499|ENST00000617275|PLEKHA2	ENSG00000169499|ENST00000617275|PLEKHA2	ENSG00000169499|ENST00000617275|PLEKHA2	MULTI-MSMS	OvCa9_classI_Rep4_	4	459.2566833496094	2	459.256174	916.497795	-1.0088	-0.0004633	0.91775	0.00042148	-0.09105	-4.1815E-05	459.25651976154535	55.603	1.4684	52.309	51.906	53.374	-3.2944					79	28	4	0	0	0	0.2077	1	3521	3521		75.043	3.1658	1	485190			36213	7013	29832	29858	39599	39599					0.03620596892096728
LTRPGSSSL	9	Unmodified	_LTRPGSSSL_					0	0	0		ENSG00000169499|ENST00000617275|PLEKHA2	ENSG00000169499|ENST00000617275|PLEKHA2	ENSG00000169499|ENST00000617275|PLEKHA2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	459.256174	916.497795	-0.61733	-0.00028351	0.90154	0.00041404	0.28421	0.00013053	459.25641814651635	55.211	1.3937	52.397	51.722	53.116	-2.8139	0.044167	-1.1875E-05	NaN	75.043	53	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110500			36214	7013	29832	29858							0.03620596892096728
LTRQPFAIGG	10	Unmodified	_LTRQPFAIGG_					0	0	0		ENST00000467593.1_1_6:32823908-32826344:+|nuORF;nc|ENSG00000240065|P28065-2|PSMB9;ENSG00000240065|ENST00000374859|PSMB9;ENST00000464863.1_1_6:32825734-32826344:+|nuORF	ENST00000467593.1_1_6:32823908-32826344:+|nuORF	ENST00000467593.1_1_6:32823908-32826344:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.7843627929688	2	530.300916	1058.58728	-1.046	-0.00055469	2.105	0.0011163	1.059	0.00056158	530.3019425124904	102.12	0.31529	99.916	99.727	100.04	-2.1994					9	5	2	0	0	0	0.026688	1	9172	9172		25.574	0	1	35939			36215	9335	29833	29859	39600	39600					0.06032851571490028
LTRQPLTA	8	Unmodified	_LTRQPLTA_					0	0	0			REV__ENSG00000177103|ENST00000651296|DSCAML1	REV__ENSG00000177103|ENST00000651296|DSCAML1	MULTI-MSMS	OvCa9_classI_Rep2	2	450.2696838378906	2	450.269084	898.523616	1.3254	0.0005968	-1.7002	-0.00076554	-0.37475	-0.00016874	450.2680012991639	61.146	3.3168	58.387	57.67	60.987	-2.7593					139	63	5	0	0	0	0.60331	3	4533	4515;4533;4576		63.306	7.8021	1	6706400	+		36216	21986	29834	29860	39601;39602;39603	39602					0.07029491134369437
LTRQPLTA	8	Unmodified	_LTRQPLTA_					0	0	0			REV__ENSG00000177103|ENST00000651296|DSCAML1	REV__ENSG00000177103|ENST00000651296|DSCAML1	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.27020263671875	2	450.269084	898.523616	0.66588	0.00029983	-1.2562	-0.00056561	-0.59027	-0.00026578	450.2683337986321	61.743	3.9648	58.286	57.567	61.531	-3.4577					187	81	5	0	0	0	0.65062	1	4249	4249		53.351	5.4358	1	30469000	+		36217	21986	29834	29860	39604	39604					0.07029491134369437
LTRRDETETK	10	Unmodified	_LTRRDETETK_					0	0	0			REV__ENSG00000080200|ENST00000389622|CRYBG3	REV__ENSG00000080200|ENST00000389622|CRYBG3	MULTI-MSMS	OvCa9_classI_Rep2	2	624.83154296875	2	624.830766	1247.64698	-0.54938	-0.00034327	3.9243	0.002452	3.3749	0.0021087	624.8331403938798	92.883	1.8991	91.715	91.394	93.293	-1.168					117	36	5	0	0	0	0.49595	1	8359	8359		54.722	1.3709	1	828600	+		36218	17051	29835	29861	39605	39605					0.033060777241644246
LTRRSYRK	8	Unmodified	_LTRRSYRK_					0	0	0			REV__nc|ENSG00000115109|Q9HCM4-2|EPB41L5	REV__nc|ENSG00000115109|Q9HCM4-2|EPB41L5	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.8092651367188	2	540.325257	1078.63596	1.9449	0.0010509	-2.9414	-0.0015893	-0.9965	-0.00053843	540.3236465835963	92.643	0.70973	92.643	92.343	93.053	0					27	16	2	0	0	0	0.028476	1	10074	10074		33.516	0	1	597890	+		36219	18218	29836	29862	39606	39606					0.0997876493122476
LTRRTFTN	8	Unmodified	_LTRRTFTN_					0	0	0			REV__nc|ENSG00000151914|Q03001-3|DST	REV__nc|ENSG00000151914|Q03001-3|DST	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.8070373535156	2	504.78289	1007.55123	-0.91444	-0.0004616	-2.4011	-0.001212	-3.3155	-0.0016736	504.78115720896045	103.99	0.68257	101.87	101.48	102.17	-2.1192					15	12	2	0	0	0	0.028476	1	9366	9366		23.042	0	1	12966	+		36220	28928	29837	29863	39607	39607					0.0477539439461907
LTRRWYWYYIR	11	Unmodified	_LTRRWYWYYIR_					0	0	0			REV__ENSG00000163686|ENST00000478253|ABHD6	REV__ENSG00000163686|ENST00000478253|ABHD6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.8186645507812	3	559.300048	1674.87832	1.8164	0.0010159	1.2269	0.00068621	3.0433	0.0017021	559.300262821658	35.858	0.59887	33.009	32.74	33.339	-2.849					21	11	3	0	0	0	0.026461	1	1166	1166		8.7993	7.2763	1	21198	+		36221	20871	29838	29864	39608	39608					0.0678717021655757
LTRVILSYK	9	Unmodified	_LTRVILSYK_					0	0	0		ENSG00000001084|ENST00000650454|GCLC	ENSG00000001084|ENST00000650454|GCLC	ENSG00000001084|ENST00000650454|GCLC	MULTI-MSMS	OvCa9_classI_Rep3	3	546.8400268554688	2	546.842416	1091.67028	-7.0439	-0.0038519	3.2968	0.0018028	-3.7471	-0.0020491	546.8440760274939	158.88	1.6198	157.61	157.26	158.88	-1.267					96	31	5	0	0	0	0.69403	1	13799	13799		19.997	0.6368	1	890150			36222	803	29839	29865	39609	39609					0.12811168299458586
LTRVIYFGN	9	Unmodified	_LTRVIYFGN_					0	0	0		tr|A0A553STU6|A0A553STU6_NIACIPLP-dependentaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05625PE=3SV=1	tr|A0A553STU6|A0A553STU6_NIACIPLP-dependentaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05625PE=3SV=1	tr|A0A553STU6|A0A553STU6_NIACIPLP-dependentaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05625PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.805419921875	2	541.803291	1081.59203	-1.3029	-0.00070592	3.6077	0.0019546	2.3048	0.0012487	541.8052691155432	80.327	1.6539	77.616	76.791	78.445	-2.7106					68	33	5	0	0	0	0.44568	1	6531	6531		47.657	3.5405	1	758010			36223	34536	29840	29866	39610	39610					0.054497357142281544
LTRVKVDGIQH	11	Unmodified	_LTRVKVDGIQH_					0	0	0			REV__ENST00000477109.1_1_X:53226904-53227733:-|nuORF	REV__ENST00000477109.1_1_X:53226904-53227733:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3697509765625	2	633.369861	1264.72517	-4.8824	-0.0030923	3.9881	0.002526	-0.89421	-0.00056637	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.59615	2	13105	12996;13105		45.022	14.704	1	765700	+		36224	26381	29841	29867	39611;39612	39612					0.10339555100085818
LTRVTKKN	8	Unmodified	_LTRVTKKN_					0	0	0			REV__tr|A0A553SI95|A0A553SI95_NIACIC5apeptidaseOS=NialliacirculansOX=1397GN=CEQ21_14480PE=3SV=1	REV__tr|A0A553SI95|A0A553SI95_NIACIC5apeptidaseOS=NialliacirculansOX=1397GN=CEQ21_14480PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.27423095703125	2	480.303458	958.592364	2.2535	0.0010824	1.416	0.00068012	3.6695	0.0017625	480.30367948576765	92.782	0.20541	92.782	92.721	92.926	0					8	4	3	0	0	0	0.028476	1	10036	10036		27.882	0	1	463910	+		36225	29873	29842	29868	39613	39613					0.11141155434086158
LTRYLAVELS	10	Unmodified	_LTRYLAVELS_					0	0	0		tr|A0A553SG55|A0A553SG55_NIACIEnoyl-[acyl-carrier-protein]reductaseFabLOS=NialliacirculansOX=1397GN=fabLPE=3SV=1	tr|A0A553SG55|A0A553SG55_NIACIEnoyl-[acyl-carrier-protein]reductaseFabLOS=NialliacirculansOX=1397GN=fabLPE=3SV=1	tr|A0A553SG55|A0A553SG55_NIACIEnoyl-[acyl-carrier-protein]reductaseFabLOS=NialliacirculansOX=1397GN=fabLPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	582.8344116210938	2	582.834788	1163.65502	-0.78135	-0.0004554	0.60154	0.0003506	-0.17981	-0.0001048	582.8349775813373	121.7	1.0886	121.5	121.2	122.29	-0.19718					47	21	3	0	0	0	0.6349	1	11779	11779		37.812	2.1932	1	119850			36226	33120	29843	29869	39614	39614					0.07974256711599992
LTRYTAIEL	9	Unmodified	_LTRYTAIEL_					0	0	0			REV__ENSG00000167768|ENST00000252244|KRT1	REV__ENSG00000167768|ENST00000252244|KRT1	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3098754882812	2	540.308406	1078.60226	1.25	0.00067539	-0.88154	-0.0004763	0.36846	0.00019908	540.3077955858466	119.23	3.2776	118.2	117.78	121.06	-1.0271					179	64	5	0	0	0	0.21231	1	9120	9120		74.255	5.4682	1	415420	+	+	36227	16188	29844	29870	39615	39615					0.06610298648797652
LTSANKAKL	9	Unmodified	_LTSANKAKL_					0	0	0		ENSG00000176160|ENST00000323777|HSF5	ENSG00000176160|ENST00000323777|HSF5	ENSG00000176160|ENST00000323777|HSF5	MULTI-MSMS	OvCa99_classI_Rep5	1	473.29119873046875	2	473.290017	944.565481	2.3868	0.0011296	-0.57078	-0.00027015	1.816	0.00085948	473.28972320961117	76.245	0.96493	76.245	75.996	76.961	0					39	23	3	0	0	0	0.19758	1	7628	7628		76.774	1.7308	1	1381000			36228	7587	29845	29871	39616	39616					0.09098046822896322
LTSCLQPLR	9	Unmodified	_LTSCLQPLR_					0	0	0		ENST00000495607.5_1_22:50752441-50754573:-|nuORF;ENSG00000205593|ENST00000413817|DENND6B	ENST00000495607.5_1_22:50752441-50754573:-|nuORF	ENST00000495607.5_1_22:50752441-50754573:-|nuORF	MSMS	OvCa99_classI_Rep5	1	515.7905883789062	2	515.789327	1029.5641	NaN	NaN	NaN	NaN	NaN	NaN	NaN	118.39	1	118.39	117.89	118.89	0								0	0	0	0.17442	1	13573	13573		42.396	1.618	1				36229	9077	29846	29872	39617	39617					0.050500894624974535
LTSECLSCLV	10	Unmodified	_LTSECLSCLV_					0	0	0		ENST00000487834.5_1_3:108281971-108308222:-|nuORF;ENSG00000163507|ENST00000295746|CIP2A;ENST00000461666.1_1_3:108303828-108308222:-|nuORF	ENST00000487834.5_1_3:108281971-108308222:-|nuORF	ENST00000487834.5_1_3:108281971-108308222:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.2601318359375	2	534.25921	1066.50387	-2.4566	-0.0013125	2.1511	0.0011492	-0.30552	-0.00016323	534.2602325774062	108.5	2.1566	106.78	106.37	108.52	-1.7256					88	41	3	0	0	0	0.50656	1	9964	9964		53.351	3.9099	1	501350			36230	6317	29847	29873	39618	39618					-0.026723889829327163
LTSEYWVL	8	Unmodified	_LTSEYWVL_					0	0	0			REV__ENSG00000052841|ENST00000039989|TTC17	REV__ENSG00000052841|ENST00000039989|TTC17	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.7806701660156	2	505.7633	1009.51205	-1.0234	-0.00051761	-3.9653	-0.0020055	-4.9887	-0.0025231	505.7602488829257	102.41	0.31267	100.89	100.74	101.05	-1.5211					8	5	2	0	0	0	0.028476	1	7050	7050		33.516	1.5607	1	5029.7	+		36231	16692	29848	29874	39619	39619					0.0076724932038132465
LTSFGLSNKI	10	Unmodified	_LTSFGLSNKI_					0	0	0		APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB;APOB|p.N3224Tfs*50|1|0.31|ENSG00000084674|chr2:21007197-21007198|-/CTTCTTCATATTCTGCACTGAAG|frameshift_variant	APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant	APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3099365234375	2	540.308406	1078.60226	1.25	0.00067539	-0.88154	-0.0004763	0.36846	0.00019908	540.3077955858466	119.23	3.2776	118.2	117.78	121.06	-1.0271					179	64	5	0	0	0	0.47131	1	9126	9126		58.246	3.4699	1	415420			36232	102	29849	29875	39620	39620					0.0661029864882039
LTSFLPIGIP	10	Unmodified	_LTSFLPIGIP_					0	0	0		L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|175|1|anti-sense	L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|175|1|anti-sense	L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|175|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.7703857421875	2	529.318243	1056.62193	-0.51776	-0.00027406	-3.342	-0.001769	-3.8597	-0.002043	529.3163381144697	64.725	1.0669	61.24	60.822	61.889	-3.4854					40	21	3	0	0	0	0.026871	1	4599	4599		37.159	5.6293	1	141620			36233	14755	29850	29876	39621	39621					0.09588674659562457
LTSFLPIGIP	10	Unmodified	_LTSFLPIGIP_					0	0	0		L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|175|1|anti-sense	L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|175|1|anti-sense	L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|175|1|anti-sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	529.318243	1056.62193	-1.458	-0.00077174	-1.9915	-0.0010541	-3.4494	-0.0018259	529.3169641904603	63.879	0.99823	61.134	60.739	61.738	-2.7444	-0.052659	0.00054655	NaN	37.159	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102840			36234	14755	29850	29876							0.09588674659562457
LTSILIVNL	9	Unmodified	_LTSILIVNL_					0	0	0			REV__HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|7|1|sense	REV__HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|7|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.2918395996094	2	493.318243	984.621933	-1.8508	-0.00091304	1.5919	0.00078533	-0.25888	-0.00012771	493.31885567138676	108.05	1.1758	106.17	105.69	106.87	-1.8785					36	23	2	0	0	0	0.027462	1	9826	9826		15.642	0	1	37176	+		36235	28254	29851	29877	39622	39622					0.12900674659567812
LTSKGQILNL	10	Unmodified	_LTSKGQILNL_					0	0	0			REV__ENST00000361690.7_1_6:35806191-35810350:-|nuORF	REV__ENST00000361690.7_1_6:35806191-35810350:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	544.819580078125	2	543.829506	1085.64446	1.3328	0.00072479	-1.0716	-0.00058277	0.26115	0.00014202	543.8290148520188	88.667	0.88599	87.3	86.888	87.774	-1.3676					30	17	3	0	0	0	0.026915	1	7819	7819		14.865	0	1	46962	+		36236	24858	29852	29878	39623	39623					0.10506274057183873
LTSKKSLPL	9	Unmodified	_LTSKKSLPL_					0	0	0		nc|ENSG00000138376|Q99728-3|BARD1;nc|ENSG00000138376|Q99728-2|BARD1;ENSG00000138376|ENST00000260947|BARD1	nc|ENSG00000138376|Q99728-3|BARD1	nc|ENSG00000138376|Q99728-3|BARD1	MULTI-SECPEP	OvCa9_classI_Rep2	2	494.8038635253906	2	493.815867	985.617182	1.3014	0.00064265	-1.6904	-0.00083476	-0.38904	-0.00019211	493.81494828148107	65.371	1.5618	62.664	62.093	63.655	-2.7071					58	30	3	0	0	0	0.027462	1	5005	5005		45.952	10.334	1	55824			36237	4680	29853	29879	39624	39624					0.12379790516808953
LTSKNISFAN	10	Unmodified	_LTSKNISFAN_					0	0	0			REV__tr|A0A7D6VRG8|A0A7D6VRG8_9CLOTFRGdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06920PE=4SV=1	REV__tr|A0A7D6VRG8|A0A7D6VRG8_9CLOTFRGdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06920PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.8270874023438	2	547.795663	1093.57677	-0.13586	-7.4421E-05	-0.30897	-0.00016925	-0.44483	-0.00024368	547.7959244340276	105.18	1.2199	105.18	104.66	105.88	0					49	27	4	0	0	0	0.026849	1	11785	11785		32.812	7.2384	1	994060	+		36238	31417	29854	29880	39625	39625					0.03372824126381602
LTSLAQHLL	9	Unmodified	_LTSLAQHLL_					0	0	0		COL1A2|p.G1105Lfs*36|1|0.03|ENSG00000164692|chr7:94427671-94427672|-/CT|frameshift_variant	COL1A2|p.G1105Lfs*36|1|0.03|ENSG00000164692|chr7:94427671-94427672|-/CT|frameshift_variant	COL1A2|p.G1105Lfs*36|1|0.03|ENSG00000164692|chr7:94427671-94427672|-/CT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	498.2995910644531	2	498.297842	994.581131	1.9579	0.00097561	-0.099268	-4.9465E-05	1.8586	0.00092615	498.2978202110871	100.07	1.2441	100.07	99.736	100.98	0					57	29	2	0	0	0	0.079296	1	11111	11111		102.77	0	1	24964000			36239	594	29855	29881	39626	39626					0.0836233333996006
LTSLLLFPLPP	11	Unmodified	_LTSLLLFPLPP_					0	0	0		ENST00000594708.1_1_9:72873172-72873439:-|nuORF	ENST00000594708.1_1_9:72873172-72873439:-|nuORF	ENST00000594708.1_1_9:72873172-72873439:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	605.8717041015625	2	605.875925	1209.7373	-4.4327	-0.0026857	-2.0731	-0.001256	-6.5058	-0.0039417	605.8745511795182	157.17	1.2501	156	155.65	156.91	-1.1707					83	31	4	0	0	0	0.72244	2	13575	13575;13612		21.96	1.6083	1	204530			36240	14169	29856	29882	39627;39628	39627					0.14081778790568933
LTSLMHTII	9	Unmodified	_LTSLMHTII_					0	0	0			REV__OR4A5|p.P281T|1|0.07|ENSG00000221840|chr11:54707725-54707725|C/A|missense_variant	REV__OR4A5|p.P281T|1|0.07|ENSG00000221840|chr11:54707725-54707725|C/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.7940673828125	2	514.794078	1027.5736	-1.6634	-0.0008563	-2.3374	-0.0012033	-4.0008	-0.0020596	514.7929620525371	119.13	1.9291	117.78	117.36	119.29	-1.3444					96	36	4	0	0	0	0.29717	1	11199	11199		63.306	0	1	154940	+		36241	29270	29857	29883	39629	39629					0.060918577480151725
LTSLPALVL	9	Unmodified	_LTSLPALVL_					0	0	0			REV__ENST00000327827.11_1_16:9212636-9212786:+|nuORF	REV__ENST00000327827.11_1_16:9212636-9212786:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.7407531738281	2	463.799686	925.584819	-1.4154	-0.00065646	-2.4017	-0.0011139	-3.8171	-0.0017704	463.7985594679424	71.828	2.2794	68.371	68.074	70.354	-3.4563					134	46	4	0	0	0	0.027441	1	5727	5727		33.516	0	1	2935000	+		36242	24502	29858	29884	39630	39630					0.11905003113781731
LTSLVLYGNKI	11	Unmodified	_LTSLVLYGNKI_					0	0	0		ENST00000519486.5_1_5:168179958-168216668:-|nuORF;ENST00000518140.5_1_5:168199753-168727722:-|nuORF;nc|ENSG00000184347|O75094-2|SLIT3;nc|ENSG00000184347|O75094-3|SLIT3;ENSG00000184347|ENST00000519560|SLIT3;nc|ENSG00000184347|O75094-4|SLIT3	ENST00000519486.5_1_5:168179958-168216668:-|nuORF	ENST00000519486.5_1_5:168179958-168216668:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	407.579833984375	3	407.579818	1219.71762	0.61537	0.00025081	-2.9691	-0.0012102	-2.3538	-0.00095934	407.5786357790963	57.72	2.7424	54.928	54.526	57.269	-2.792					151	53	5	0	0	0	0.59615	1	4143	4143		45.022	8.7046	1	1780300			36243	8147	29859	29885	39631	39631					0.11655402779797441
LTSMSWSSKI	10	Oxidation (M)	_LTSM(Oxidation (M))SWSSKI_		LTSM(1)SWSSKI		LTSM(80)SWSSKI	0	0	1			REV__ENST00000430013.1_1_21:44475809-44476173:-|nuORF	REV__ENST00000430013.1_1_21:44475809-44476173:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2890625	2	578.289356	1154.56416	-1.351	-0.00078126	1.6366	0.00094645	0.28565	0.00016519	578.2900356526777	133.55	3.1988	132.42	131.63	134.83	-1.1249					151	64	4	0	0	0	0.30325	1	10746	10746		80.455	11.97	1	94067	+		36244	25706	29860	29886	39632	39632		578			-0.006939553281654298
LTSMSWSSKI	10	Oxidation (M)	_LTSM(Oxidation (M))SWSSKI_					0	0	1			REV__ENST00000430013.1_1_21:44475809-44476173:-|nuORF	REV__ENST00000430013.1_1_21:44475809-44476173:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	578.289356	1154.56416	-0.2071	-0.00011976	0.54793	0.00031686	0.34083	0.0001971	578.289557354551	132.65	2.3151	132.42	131.88	134.2	-0.22697	0.067137	0.00040725	NaN	80.455	122	46	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121920	+		36245	25706	29860	29886				578			-0.006939553281654298
LTSPTQSH	8	Unmodified	_LTSPTQSH_					0	0	0			REV__nc|ENSG00000197283|Q96PV0-2|SYNGAP1	REV__nc|ENSG00000197283|Q96PV0-2|SYNGAP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	434.7315979003906	2	435.719424	869.424296	0.92392	0.00040257	-3.9843	-0.001736	-3.0604	-0.0013335	435.71765440783844	57.713	1.2965	57.713	57.438	58.734	0					79	30	4	0	0	0	0.028476	1	4934	4934		7.6903	0	1	5294500	+		36246	22908	29861	29887	39633	39633					-0.015639515503721668
LTSQTSRL	8	Unmodified	_LTSQTSRL_					0	0	0			REV__nc|ENSG00000184216|P51617-2|IRAK1	REV__nc|ENSG00000184216|P51617-2|IRAK1	MULTI-SECPEP	OvCa9_classI_Rep2	2	453.742919921875	2	453.256174	904.497795	0.25542	0.00011577	-1.4027	-0.00063576	-1.1472	-0.00051999	453.2553110781206	62.02	1.2643	59.261	58.829	60.094	-2.7593					50	24	3	0	0	0	0.028476	1	4715	4715		34.173	9.6685	1	95613	+		36247	22413	29862	29888	39634	39634					0.0417259689210141
LTSRQLHLL	9	Unmodified	_LTSRQLHLL_					0	0	0		ENST00000559793.5_1_15:44720097-44751301:+|nuORF	ENST00000559793.5_1_15:44720097-44751301:+|nuORF	ENST00000559793.5_1_15:44720097-44751301:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	540.8322143554688	2	540.82984	1079.64513	-0.46856	-0.00025341	3.3565	0.0018153	2.8879	0.0015619	540.8317360682152	123.45	3.5017	123.21	122.89	126.4	-0.23193					177	70	5	0	0	0	0.50149	1	12145	12145		42.396	6.7778	1	7794400			36248	13723	29863	29889	39635	39635					0.10849113496919927
LTSSKELWFRA	11	Unmodified	_LTSSKELWFRA_					0	0	0		ENST00000497699.1_1_10:28970877-28971327:+|nuORF;ENSG00000095739|ENST00000375533|BAMBI;WAC-BAMBI|2|fusion;WAC-BAMBI|1|fusion	ENST00000497699.1_1_10:28970877-28971327:+|nuORF	ENST00000497699.1_1_10:28970877-28971327:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	446.2334899902344	3	446.578588	1336.71394	0.37876	0.00016915	-3.1699	-0.0014156	-2.7911	-0.0012465	446.57704445523456	61.585	0.55905	58.127	57.963	58.523	-3.4577					17	11	2	0	0	0	0.025995	1	4222	4222		23.378	0	1	53532			36249	1938	29864	29890	39636	39636					0.05904733005922935
LTSSVVITI	9	Unmodified	_LTSSVVITI_					0	0	0			REV__tr|A0A553SIG3|A0A553SIG3_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14705PE=4SV=1	REV__tr|A0A553SIG3|A0A553SIG3_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14705PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	466.7876892089844	2	466.786776	931.558998	1.331	0.0006213	1.1648	0.00054373	2.4959	0.001165	466.7871180753829	144.18	0.49432	144.18	143.91	144.4	0					16	9	2	0	0	0	0.068524	1	16846	16846		108.09	17.311	1	100250	+		36250	29890	29865	29891	39637	39637					0.09048108871525073
LTSTATKDP	9	Unmodified	_LTSTATKDP_					0	0	0		P4HA1|p.L114Nfs*2|1|0.07|ENSG00000122884|chr10:73068969-73068970|-/TT|frameshift_variant;P4HA1|p.L114Sfs*9|1|0.07|ENSG00000122884|chr10:73068970-73068971|-/ATGTGCTCATATGGTATCCTGAA|frameshift_variant;P4HA1|p.E329Dfs*3|1|0.05|ENSG00000122884|chr10:73047015-73047016|-/A|frameshift_variant;nc|ENSG00000122884|P13674-3|P4HA1;nc|ENSG00000122884|P13674-2|P4HA1;ENSG00000122884|ENST00000394890|P4HA1	P4HA1|p.L114Nfs*2|1|0.07|ENSG00000122884|chr10:73068969-73068970|-/TT|frameshift_variant	P4HA1|p.L114Nfs*2|1|0.07|ENSG00000122884|chr10:73068969-73068970|-/TT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.2731628417969	2	467.248015	932.481476	-1.1655	-0.00054459	0.84245	0.00039363	-0.32309	-0.00015096	467.2480416055175	50.561	1.7991	47.387	46.475	48.274	-3.1734					53	34	3	0	0	0	0.027433	1	2849	2849		51.335	0	1	70663			36251	3564	29866	29892	39638	39638					0.012534709353417384
LTSVAKFVF	9	Unmodified	_LTSVAKFVF_					0	0	0		ENSG00000149742|ENST00000279178|SLC22A9;nc|ENSG00000149742|Q8IVM8-2|SLC22A9	ENSG00000149742|ENST00000279178|SLC22A9	ENSG00000149742|ENST00000279178|SLC22A9	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.77496337890625	2	506.29731	1010.58007	1.9274	0.00097581	-0.32723	-0.00016568	1.6001	0.00081014	506.29693292307405	117.59	0.56552	117.59	117.27	117.84	0					16	11	2	0	0	0	0.027462	1	13457	13457		24.203	3.7209	1	65609			36252	5487	29867	29893	39639	39639					0.07520118971046941
LTSVFHVD	8	Unmodified	_LTSVFHVD_					0	0	0			REV__nc|ENSG00000187172|Q86Y30|BAGE2	REV__nc|ENSG00000187172|Q86Y30|BAGE2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.28387451171875	2	459.239993	916.465432	-0.97506	-0.00044778	-4.0283	-0.00185	-5.0034	-0.0022977	459.2378856936819	51.055	0.75063	47.882	47.671	48.421	-3.1734					18	14	2	0	0	0	0.028476	1	3017	3017		33.516	13.034	1	20315	+		36253	29059	29868	29894	39640	39640					0.0038580948910293955
LTSVKERVK	9	Unmodified	_LTSVKERVK_					0	0	0		ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.8016967773438	2	530.329673	1058.64479	-1.3131	-0.00069638	-1.9861	-0.0010533	-3.2992	-0.0017497	530.3279230085953	104.63	0.34757	104.05	103.87	104.22	-0.57639					11	6	3	0	0	0	0.027462	1	9675	9675		27.882	1.1893	1	5927.2			36254	5604	29869	29895	39641	39641					0.11781693777038527
LTSVPELQI	9	Unmodified	_LTSVPELQI_					0	0	0		ENSG00000172365|ENST00000641342|OR5B2	ENSG00000172365|ENST00000641342|OR5B2	ENSG00000172365|ENST00000641342|OR5B2	MULTI-MSMS	OvCa99_classI_Rep5	1	500.2914733886719	2	500.289682	998.564812	1.9027	0.00095192	0.48566	0.00024297	2.3884	0.0011949	500.289780197782	92.943	0.87141	92.943	92.555	93.426	0					34	20	2	0	0	0	0.21231	1	10052	10052		74.255	2.3776	1	1804900			36255	7294	29870	29896	39642	39642					0.06547207383187015
LTSVSSPVL	9	Unmodified	_LTSVSSPVL_					0	0	0		ENST00000570310.5_1_17:79682952-79684780:+|nuORF	ENST00000570310.5_1_17:79682952-79684780:+|nuORF	ENST00000570310.5_1_17:79682952-79684780:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	452.243896484375	2	451.7633	901.512048	2.3135	0.0010452	0.18678	8.4381E-05	2.5003	0.0011295	451.7633737216731	85.463	0.70335	85.463	85.046	85.75	0					31	16	3	0	0	0	0.027433	1	8977	8977		47.916	1.9636	1	423180			36256	13895	29871	29897	39643	39643					0.057352493203779886
LTSVSSPVL	9	Unmodified	_LTSVSSPVL_					0	0	0		ENST00000570310.5_1_17:79682952-79684780:+|nuORF	ENST00000570310.5_1_17:79682952-79684780:+|nuORF	ENST00000570310.5_1_17:79682952-79684780:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	451.7633	901.512048	-0.50026	-0.000226	1.504	0.00067945	1.0037	0.00045345	451.7639135273692	87.908	0.77142	85.731	85.447	86.219	-2.1768	0.013686	0.00031132	NaN	38.806	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34661			36257	13895	29871	29897							0.057352493203779886
LTSVSSPVL	9	Unmodified	_LTSVSSPVL_					0	0	0		ENST00000570310.5_1_17:79682952-79684780:+|nuORF	ENST00000570310.5_1_17:79682952-79684780:+|nuORF	ENST00000570310.5_1_17:79682952-79684780:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	451.7633	901.512048	-1.1063	-0.00049977	1.4853	0.00067102	0.37907	0.00017125	451.76378880992786	88.561	0.75777	85.959	85.578	86.336	-2.6027	0.24078	0.00029446	NaN	38.806	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37086			36258	13895	29871	29897							0.057352493203779886
LTTDIIEKYGF	11	Unmodified	_LTTDIIEKYGF_					0	0	0		ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L;DDX60L|p.R1229Pfs*17|1|0.04|ENSG00000181381|chr4:168394589-168394590|-/GAAGAGTAAAGGGTTATGACCAG|frameshift_variant	ENSG00000181381|ENST00000682922|DDX60L;DDX60L|p.R1229Pfs*17|1|0.04|ENSG00000181381|chr4:168394589-168394590|-/GAAGAGTAAAGGGTTATGACCAG|frameshift_variant	DDX60L|p.R1229Pfs*17|1|0.04|ENSG00000181381|chr4:168394589-168394590|-/GAAGAGTAAAGGGTTATGACCAG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	433.885009765625	3	433.899216	1298.67582	0.56372	0.0002446	1.1271	0.00048904	1.6908	0.00073364	433.8999919941963	22.24	0.4041	20.902	20.625	21.029	-1.3386					9	7	2	0	0	0	0.026042	1	276	276		26.063	2.6855	1	10802			36259	7929;725	29872	29898	39644	39644					0.038428023006190415
LTTDMMTNLVD	11	Unmodified	_LTTDMMTNLVD_					0	0	0			REV__ENSG00000138078|ENST00000409411|PREPL	REV__ENSG00000138078|ENST00000409411|PREPL	MULTI-MSMS	OvCa9_classI_Rep3	3	627.2904663085938	2	627.291239	1252.56792	-0.11263	-7.0655E-05	0.055318	3.4701E-05	-0.057316	-3.5954E-05	627.2911122528155	116.66	1.4361	115.62	115.29	116.73	-1.0414					68	28	3	0	0	0	0.5466	1	8725	8725		49.536	13.089	1	258240	+		36260	19507	29873	29899	39645	39645					-0.04825653616649106
LTTDMMTNLVD	11	Unmodified	_LTTDMMTNLVD_					0	0	0			REV__ENSG00000138078|ENST00000409411|PREPL	REV__ENSG00000138078|ENST00000409411|PREPL	MULTI-MSMS	OvCa9_classI_Rep4_	4	627.2904663085938	2	627.291239	1252.56792	-0.24332	-0.00015263	0.35268	0.00022123	0.10936	6.8601E-05	627.2913318726058	116.94	1.872	115.57	114.89	116.77	-1.3645					78	35	3	0	0	0	0.36705	1	10931	10931		63.534	17.582	1	271510	+		36261	19507	29873	29899	39646	39646					-0.04825653616649106
LTTEGDLKVE	10	Unmodified	_LTTEGDLKVE_					0	0	0		ENSG00000188211|ENST00000338965|NCR3LG1	ENSG00000188211|ENST00000338965|NCR3LG1	ENSG00000188211|ENST00000338965|NCR3LG1	MULTI-SECPEP	OvCa9_classI_Rep3	3	553.3171997070312	2	552.792786	1103.57102	-1.5188	-0.00083961	3.8161	0.0021095	2.2972	0.0012699	553.2964868009324	84.729	0.34807	82.468	82.307	82.655	-2.261					12	6	3	0	0	0	0.026931	1	4939	4939		30.318	1.1477	1	23919			36262	8458	29874	29900	39647	39647					0.02337680824052768
LTTEVHPEL	9	Unmodified	_LTTEVHPEL_					0	0	0		ENSG00000125991|ENST00000348547|ERGIC3;nc|ENSG00000125991|Q9Y282-3|ERGIC3;ENST00000486268.5_1_20:34129846-34130758:+|nuORF;nc|ENSG00000125991|Q9Y282-2|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	ENSG00000125991|ENST00000348547|ERGIC3	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.7676391601562	2	519.776939	1037.53933	1.7547	0.00091204	-0.035141	-1.8265E-05	1.7195	0.00089377	519.7766786322827	78.454	0.28402	78.454	78.214	78.498	0					17	6	4	0	0	0	0.027455	1	7960	7960		60.972	8.6728	1	1814600			36263	3759	29875	29901	39648	39648					0.022057328607616
LTTFVEGCTP	10	Unmodified	_LTTFVEGCTP_					0	0	0			REV__ENST00000524230.6_3_3:126326756-126373974:-|nuORF	REV__ENST00000524230.6_3_3:126326756-126373974:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	534.25830078125	2	534.257525	1066.5005	-0.87643	-0.00046824	3.8611	0.0020628	2.9847	0.0015946	534.2594436353716	107.28	2.2603	106.97	106.37	108.63	-0.30836					108	45	3	0	0	0	0.52321	1	9989	9989		51.335	3.6781	1	322070	+		36264	27097	29876	29902	39649	39649					-0.0300931576525727
LTTGPLKRSL	10	Unmodified	_LTTGPLKRSL_					0	0	0			REV__nc|ENSG00000164362|O14746-3|TERT	REV__nc|ENSG00000164362|O14746-3|TERT	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.79541015625	2	543.337498	1084.66044	1.8864	0.0010249	0.25179	0.00013681	2.1382	0.0011617	543.3374510249198	108.58	1.3952	108.58	108.24	109.64	0					50	31	3	0	0	0	0.026867	1	12266	12266		42.864	3.6114	1	324260	+		36265	20982	29877	29903	39650	39650					0.12149980294088891
LTTIIVMHE	9	Unmodified	_LTTIIVMHE_					0	0	0		ENST00000561205.1_1_15:38545408-38591605:+|nuORF	ENST00000561205.1_1_15:38545408-38591605:+|nuORF	ENST00000561205.1_1_15:38545408-38591605:+|nuORF	MSMS	OvCa99_classI_Rep5	1	528.7902221679688	2	528.791535	1055.56852	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.95	1	142.95	142.45	143.45	0								0	0	0	0.17121	1	16704	16704		47.916	1.9434	1				36266	13749	29878	29904	39651	39651					0.04295553885413028
LTTIKAAVH	9	Unmodified	_LTTIKAAVH_					0	0	0		ENST00000480175.1_1_20:33169425-33222494:-|nuORF	ENST00000480175.1_1_20:33169425-33222494:-|nuORF	ENST00000480175.1_1_20:33169425-33222494:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	477.2929992675781	2	477.292559	952.570566	0.29004	0.00013844	-0.76416	-0.00036473	-0.47411	-0.00022629	477.2921516413295	74.448	4.0947	72.038	71.151	75.246	-2.4106					206	80	5	0	0	0	0.36502	1	3765	3765		55.504	2.5675	1	1964800			36267	12518	29879	29905	39652	39652					0.09238350685507157
LTTKATTTRA	10	Unmodified	_LTTKATTTRA_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	MULTI-MSMS	OvCa99_classI_Rep5	1	532.3071899414062	2	532.308938	1062.60332	2.4397	0.0012987	-0.2029	-0.000108	2.2368	0.0011907	532.3108034510865	116.26	1.4146	116.26	115.54	116.95	0					57	30	4	0	0	0	0.53807	1	13323	13323		49.536	0	1	1546600			36268	3283	29880	29906	39653	39653					0.07452513017688034
LTTKDALLKEI	11	Unmodified	_LTTKDALLKEI_					0	0	0			REV__nc|ENSG00000103723|Q13367-3|AP3B2	REV__nc|ENSG00000103723|Q13367-3|AP3B2	MULTI-MSMS	OvCa9_classI_Rep2	2	415.58697509765625	3	415.586861	1243.73875	-0.52837	-0.00021958	1.3227	0.00054972	0.79438	0.00033013	415.5871992361253	53.239	1.788	50.425	50.084	51.872	-2.8139					82	35	4	0	0	0	0.43443	1	3593	3593		58.63	1.4809	1	237460	+		36269	17632	29881	29907	39654	39654					0.12663368088669813
LTTLCCRW	8	Unmodified	_LTTLCCRW_					0	0	0			REV__ENSG00000156413|ENST00000318336|FUT6	REV__ENSG00000156413|ENST00000318336|FUT6	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.2475280761719	2	498.243698	994.472843	1.7313	0.00086259	-0.72064	-0.00035906	1.0106	0.00050353	498.2430858333314	108.69	0.43263	108.69	108.54	108.97	0					15	9	2	0	0	0	0.028476	1	12324	12324		25.45	0	1	157100	+		36270	20476	29882	29908	39655	39655					-0.02461497506487831
LTTLPESSAFA	11	Unmodified	_LTTLPESSAFA_					0	0	0		ENSG00000217236|ENST00000394967|SP9	ENSG00000217236|ENST00000394967|SP9	ENSG00000217236|ENST00000394967|SP9	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.3161010742188	2	568.795329	1135.5761	1.4874	0.00084601	0.08185	4.6556E-05	1.5692	0.00089257	568.7952670848045	138.59	0.38078	138.59	138.4	138.78	0					11	7	2	0	0	0	0.025496	1	16177	16177		40.778	15.204	1	124930			36271	9217	29883	29909	39656	39656					0.01373984686665608
LTTMGDRF	8	Unmodified	_LTTMGDRF_					0	0	0		nc|ENSG00000101335|P24844-2|MYL9;ENSG00000101335|ENST00000279022|MYL9;ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B	nc|ENSG00000101335|P24844-2|MYL9;ENSG00000101608|ENST00000217652|MYL12A	ENSG00000101608|ENST00000217652|MYL12A	MULTI-MSMS	OvCa99_classI_Rep5	1	470.73193359375	2	470.731477	939.448402	-0.36955	-0.00017396	0.24672	0.00011614	-0.12283	-5.7818E-05	470.7314322625433	70.414	0.59122	70.414	70.17	70.761	0					32	14	3	0	0	0	0.55617	1	6744	6744		71.877	8.5712	1	1380500			36272	2166;2190	29884	29910	39657	39657					-0.023744343883549845
LTTMGDRFTDE	11	Unmodified	_LTTMGDRFTDE_					0	0	0		nc|ENSG00000101335|P24844-2|MYL9;ENSG00000101335|ENST00000279022|MYL9;ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B	nc|ENSG00000101335|P24844-2|MYL9;ENSG00000101608|ENST00000217652|MYL12A	ENSG00000101608|ENST00000217652|MYL12A	MULTI-MSMS	OvCa99_classI_Rep5	1	643.2911987304688	2	643.290085	1284.56562	2.8301	0.0018206	-0.82333	-0.00052964	2.0068	0.0012909	643.2895404961577	75.23	0.47709	75.23	75.005	75.482	0					18	11	2	0	0	0	0.050884	1	7478	7478		115.23	63.704	1	1749700			36273	2166;2190	29885	29911	39658	39658					-0.06528366030079269
LTTMYELE	8	Unmodified	_LTTMYELE_					0	0	0		ENST00000493792.1_1_2:3482527-3483229:+|nuORF;ENSG00000171853|ENST00000324266|TRAPPC12	ENST00000493792.1_1_2:3482527-3483229:+|nuORF	ENST00000493792.1_1_2:3482527-3483229:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.79437255859375	2	500.238801	998.463049	-0.25583	-0.00012798	-0.88328	-0.00044185	-1.1391	-0.00056983	500.2375972963392	108.47	0.19786	108.25	108.12	108.32	-0.22498					5	3	2	0	0	0	0.028476	1	10155	10155		26.796	8.4717	1	3574.5			36274	12742	29886	29912	39659	39659					-0.03624407030883958
LTTSKLKL	8	Unmodified	_LTTSKLKL_					0	0	0		L1MB2_dup734|chr2:41391481-41393110:-|2.5038669870492565|0.0056028466714037|8.8|420.0|7|1|sense	L1MB2_dup734|chr2:41391481-41393110:-|2.5038669870492565|0.0056028466714037|8.8|420.0|7|1|sense	L1MB2_dup734|chr2:41391481-41393110:-|2.5038669870492565|0.0056028466714037|8.8|420.0|7|1|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	452.2838439941406	2	452.29731	902.580068	1.5306	0.00069226	-0.37194	-0.00016823	1.1586	0.00052403	452.29683814092874	47.174	0.34586	44.464	44.242	44.588	-2.7097					11	6	2	0	0	0	0.028476	1	2854	2854		20.482	0	1	14226			36275	14589	29887	29913	39660	39660					0.12488118971032236
LTTSLFTGKL	10	Unmodified	_LTTSLFTGKL_					0	0	0			REV__ENST00000520379.2_1_7:77814916-78119132:-|nuORF	REV__ENST00000520379.2_1_7:77814916-78119132:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.7841796875	2	540.818607	1079.62266	1.1438	0.00061858	0.17779	9.6151E-05	1.3216	0.00071473	540.8184426824187	90.066	1.1896	88.763	88.433	89.622	-1.302					55	23	4	0	0	0	0.026606	1	7986	7986		44.377	0	1	162410	+		36276	22639	29888	29914	39661	39661					0.08603469308650347
LTTVKQDI	8	Unmodified	_LTTVKQDI_					0	0	0		tr|A0A553SJF7|A0A553SJF7_NIACISporulationproteinYunBOS=NialliacirculansOX=1397GN=yunBPE=4SV=1	tr|A0A553SJF7|A0A553SJF7_NIACISporulationproteinYunBOS=NialliacirculansOX=1397GN=yunBPE=4SV=1	tr|A0A553SJF7|A0A553SJF7_NIACISporulationproteinYunBOS=NialliacirculansOX=1397GN=yunBPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	459.2464599609375	2	459.26875	916.522947	-0.39483	-0.00018133	1.6149	0.00074166	1.22	0.00056033	459.26932659702186	60.419	1.4232	57.649	57.186	58.609	-2.7702					51	26	3	0	0	0	0.028476	1	4543	4543		24.203	0	1	166250			36277	33497	29889	29915	39662	39662					0.06134651694674176
LTTVLPMNL	9	Unmodified	_LTTVLPMNL_					0	0	0			REV__ENST00000553576.5_1_14:77901517-77909492:-|nuORF	REV__ENST00000553576.5_1_14:77901517-77909492:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.2884216308594	2	501.288628	1000.5627	1.3674	0.00068548	2.2705	0.0011382	3.6379	0.0018236	501.2895121117765	137.98	2.3901	136.45	135.78	138.17	-1.5284					99	50	3	0	0	0	0.55588	1	13397	13397		37.159	2.9866	1	64432	+		36278	20232	29890	29916	39663	39663					0.06244455373735036
LTVAAVRE	8	Unmodified	_LTVAAVRE_					0	0	0			REV__ENSG00000114124|ENST00000682958|GRK7	REV__ENSG00000114124|ENST00000682958|GRK7	MULTI-MSMS	OvCa99_classI_Rep5	1	429.7561340332031	2	429.75581	857.497067	0.41651	0.000179	-0.19795	-8.507E-05	0.21856	9.3929E-05	429.75558404028425	46.175	1.184	46.175	45.754	46.938	0					57	26	4	0	0	0	0.57734	1	3240	3240		68.787	2.3575	1	1988400	+		36279	18179	29891	29917	39664	39664					0.06261802243034253
LTVAPKVN	8	Unmodified	_LTVAPKVN_					0	0	0			REV__nc|ENSG00000131373|Q9UJ83-3|HACL1	REV__nc|ENSG00000131373|Q9UJ83-3|HACL1	MULTI-MSMS	OvCa9_classI_Rep2	2	421.2596130371094	2	421.260728	840.506903	0.1688	7.111E-05	-3.1201	-0.0013144	-2.9513	-0.0012433	421.2592965587955	134.89	1.4682	134.66	133.66	135.13	-0.22696					55	29	3	0	0	0	0.73626	1	13392	13392		33.516	0	1	378840	+		36280	19007	29892	29918	39665	39665					0.08026990248424681
LTVATILKI	9	Unmodified	_LTVATILKI_					0	0	0		ENST00000303115.7_1_5:35877801-35877897:+|nuORF	ENST00000303115.7_1_5:35877801-35877897:+|nuORF	ENST00000303115.7_1_5:35877801-35877897:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	486.3289489746094	2	486.328611	970.642668	1.8621	0.00090558	-0.046514	-2.2621E-05	1.8156	0.00088296	486.32842258024266	128.66	1.3506	128.66	128.37	129.72	0					63	28	4	0	0	0	0.19758	1	14942	14942		76.774	2.5191	1	546870			36281	10210	29893	29919	39666	39666					0.15617265039213635
LTVATLEER	9	Unmodified	_LTVATLEER_					0	0	0		ENSG00000105464|ENST00000263269|GRIN2D;GRIN2D|p.S691Lfs*18|1|0.08|ENSG00000105464|chr19:48419795-48419795|C/-|frameshift_variant;ENST00000584176.1_1_17:72843434-72846906:-|nuORF;ENSG00000161509|ENST00000293190|GRIN2C	ENSG00000105464|ENST00000263269|GRIN2D;ENST00000584176.1_1_17:72843434-72846906:-|nuORF	ENSG00000105464|ENST00000263269|GRIN2D	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.2872924804688	2	516.290214	1030.56587	-1.0896	-0.00056253	1.8895	0.00097554	0.79995	0.00041301	516.2910834959896	48.563	1.0379	45.456	45.039	46.076	-3.1077					33	19	2	0	0	0	0.027462	1	2711	2711		16.473	0	1	59083			36282	2461;6129	29894	29920	39667	39667					0.051814217520814054
LTVATLEER	9	Unmodified	_LTVATLEER_					0	0	0		ENSG00000105464|ENST00000263269|GRIN2D;GRIN2D|p.S691Lfs*18|1|0.08|ENSG00000105464|chr19:48419795-48419795|C/-|frameshift_variant;ENST00000584176.1_1_17:72843434-72846906:-|nuORF;ENSG00000161509|ENST00000293190|GRIN2C	ENSG00000105464|ENST00000263269|GRIN2D;ENST00000584176.1_1_17:72843434-72846906:-|nuORF	ENSG00000105464|ENST00000263269|GRIN2D	MULTI-MATCH	OvCa9_classI_Rep2	2		2	516.290214	1030.56587	-0.55543	-0.00028676	2.1194	0.0010942	1.564	0.00080747	516.2912047931304	48.164	0.7973	45.454	45.182	45.979	-2.7097	-0.00062612	0.00017722	NaN	21.96	18	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22802			36283	2461;6129	29894	29920							0.051814217520814054
LTVCPGYGVA	10	Carbamidomethyl (C)	_LTVC(Carbamidomethyl (C))PGYGVA_	LTVC(1)PGYGVA		LTVC(63)PGYGVA		0	1	0		ENST00000480958.1_1_17:41902775-41908980:-|nuORF	ENST00000480958.1_1_17:41902775-41908980:-|nuORF	ENST00000480958.1_1_17:41902775-41908980:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	518.7618408203125	2	518.760235	1035.50592	1.4502	0.00075232	0.87015	0.0004514	2.3204	0.0012037	518.7604999535904	118.45	0.89486	118.45	118.11	119.01	0					51	18	4	0	0	0	0.43592	1	13586	13586		63.306	10.37	1	384050			36284	12537	29895	29921	39668	39668	145				-0.010415921827870989
LTVESLDSEQ	10	Unmodified	_LTVESLDSEQ_					0	0	0			REV__nc|ENSG00000138741|Q13507-3|TRPC3	REV__nc|ENSG00000138741|Q13507-3|TRPC3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	561.267333984375	2	560.772051	1119.52955	0.18088	0.00010143	-0.60714	-0.00034047	-0.42626	-0.00023903	560.771654540086	54.078	0.61459	50.831	50.619	51.234	-3.2474					15	11	2	0	0	0	0.027028	1	3369	3369		24.519	7.1542	1	63499	+		36285	19566	29896	29922	39669	39669					-0.02543499935291038
LTVESLDSEQ	10	Unmodified	_LTVESLDSEQ_					0	0	0			REV__nc|ENSG00000138741|Q13507-3|TRPC3	REV__nc|ENSG00000138741|Q13507-3|TRPC3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	560.772051	1119.52955	-0.68223	-0.00038258	0.23332	0.00013084	-0.44891	-0.00025173	560.7722592259364	53.839	0.59834	51.025	50.727	51.325	-2.8139	0.097029	0.00053019	NaN	31.53	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22025	+		36286	19566	29896	29922							-0.02543499935291038
LTVFAWLL	8	Unmodified	_LTVFAWLL_					0	0	0		nc|ENSG00000172375|O14523-2|C2CD2L;ENSG00000172375|ENST00000648610|C2CD2L	nc|ENSG00000172375|O14523-2|C2CD2L	nc|ENSG00000172375|O14523-2|C2CD2L	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.2468566894531	2	481.789121	961.56369	2.2768	0.0010969	-4.4431	-0.0021406	-2.1663	-0.0010437	481.7867629987906	97.064	0.72853	97.064	96.838	97.566	0					29	16	3	0	0	0	0.028476	1	10651	10651		44.531	0	1	733000			36287	7295	29897	29923	39670	39670					0.08137037804954161
LTVFLLKQA	9	Unmodified	_LTVFLLKQA_					0	0	0		tr|A0A553SL65|A0A553SL65_NIACIHeptaprenyldiphosphatesynthaseOS=NialliacirculansOX=1397GN=CEQ21_20045PE=4SV=1	tr|A0A553SL65|A0A553SL65_NIACIHeptaprenyldiphosphatesynthaseOS=NialliacirculansOX=1397GN=CEQ21_20045PE=4SV=1	tr|A0A553SL65|A0A553SL65_NIACIHeptaprenyldiphosphatesynthaseOS=NialliacirculansOX=1397GN=CEQ21_20045PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	516.2725830078125	2	516.826235	1031.63792	0.90406	0.00046724	-1.1845	-0.0006122	-0.28048	-0.00014496	516.8245892436618	79.54	0.25702	77.2	77.103	77.36	-2.3399					6	4	2	0	0	0	0.027462	1	4297	4297		50.025	7.5501	1	10709			36288	33688	29898	29924	39671	39671					0.12336380896454102
LTVGSAALEL	10	Unmodified	_LTVGSAALEL_					0	0	0			REV__ENST00000505925.1_1_5:107062182-107062734:+|nuORF	REV__ENST00000505925.1_1_5:107062182-107062734:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.28240966796875	2	487.281857	972.549162	0.31716	0.00015454	-1.3078	-0.00063728	-0.99067	-0.00048274	487.2812648001119	98.127	3.3235	95.748	95.216	98.54	-2.3786					197	64	5	0	0	0	0.41408	1	8781	8781		66.429	1.272	1	10553000	+		36289	26883	29899	29925	39672	39672					0.061789208661252815
LTVGVGFIGLN	11	Unmodified	_LTVGVGFIGLN_					0	0	0		tr|A0A7D6W2X2|A0A7D6W2X2_9CLOTPTSsugartransportersubunitIICOS=ClostridiumintestinaleOX=36845GN=HZF06_07665PE=4SV=1	tr|A0A7D6W2X2|A0A7D6W2X2_9CLOTPTSsugartransportersubunitIICOS=ClostridiumintestinaleOX=36845GN=HZF06_07665PE=4SV=1	tr|A0A7D6W2X2|A0A7D6W2X2_9CLOTPTSsugartransportersubunitIICOS=ClostridiumintestinaleOX=36845GN=HZF06_07665PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3164672851562	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.68399	1	14141	14141		35.152	4.8343	1	202430			36290	35441	29900	29926	39673	39673					0.08222889028479585
LTVGVIQLP	9	Unmodified	_LTVGVIQLP_					0	0	0			REV__ENSG00000101846|ENST00000674429|STS	REV__ENSG00000101846|ENST00000674429|STS	MULTI-MSMS	OvCa99_classI_Rep5	1	470.24298095703125	2	470.29731	938.580068	1.6146	0.00075933	-0.349	-0.00016413	1.2656	0.0005952	470.2971221785002	149.18	1.4668	149.18	148.03	149.5	0					33	29	2	0	0	0	0.50149	1	17368	17368		42.396	0	1	38195	+		36291	17521	29901	29927	39674	39674					0.10832118971029558
LTVGWRNR	8	Unmodified	_LTVGWRNR_					0	0	0		ENST00000426755.5_1_3:196366735-196443731:+|nuORF;ENST00000461791.1_1_3:196366729-196381530:+|nuORF;ENSG00000174004|ENST00000328557|NRROS	ENST00000426755.5_1_3:196366735-196443731:+|nuORF	ENST00000426755.5_1_3:196366735-196443731:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	502.281494140625	2	501.2856	1000.55665	-0.71339	-0.00035761	-0.51447	-0.00025789	-1.2279	-0.00061551	501.2852144934876	93.77	1.2895	92.67	92.072	93.361	-1.0995					44	24	3	0	0	0	0.028476	1	8409	8409		30.504	0	1	117880			36292	7432	29902	29928	39675	39675					0.05639117977079877
LTVIAEDRGT	10	Unmodified	_LTVIAEDRGT_					0	0	0		nc|ENSG00000189184|Q9HCL0-2|PCDH18;ENSG00000189184|ENST00000344876|PCDH18	nc|ENSG00000189184|Q9HCL0-2|PCDH18	nc|ENSG00000189184|Q9HCL0-2|PCDH18	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.7947387695312	2	537.793121	1073.57169	-1.8485	-0.0009941	2.9495	0.0015862	1.101	0.00059214	537.7942990683325	43.132	1.3457	40.125	39.643	40.989	-3.0074					42	25	3	0	0	0	0.026867	1	2039	2039		35.152	10.633	1	279890			36293	8543	29903	29929	39676	39676					0.03784520263752711
LTVIDEFVFM	10	Unmodified	_LTVIDEFVFM_					0	0	0			REV__tr|A0A553SP30|A0A553SP30_NIACIFlagellarmotorswitchproteinFliGOS=NialliacirculansOX=1397GN=fliGPE=3SV=1	REV__tr|A0A553SP30|A0A553SP30_NIACIFlagellarmotorswitchproteinFliGOS=NialliacirculansOX=1397GN=fliGPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	607.3146362304688	2	607.3123	1212.61005	2.0773	0.0012616	0.59039	0.00035855	2.6677	0.0016201	607.3125547207642	106.87	1.4593	105.6	105.22	106.68	-1.267					86	28	4	0	0	0	0.64063	1	7604	7604		37.159	5.6293	1	1736200	+		36294	30483	29904	29930	39677	39677					0.012246898540752227
LTVKAIDLN	9	Unmodified	_LTVKAIDLN_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.8180236816406	2	493.797675	985.580796	-1.1739	-0.00057967	-2.2678	-0.0011199	-3.4417	-0.0016995	493.79587643215314	62.169	0.24723	59.409	59.187	59.434	-2.7593					6	4	2	0	0	0	0.027447	1	4630	4630		31.53	0	1	7163.1	+		36295	19832	29905	29931	39678	39678					0.08742913620096715
LTVKKTQKH	9	Unmodified	_LTVKKTQKH_					0	0	0			REV__ENST00000547221.1_3_6:31106167-31107440:+|nuORF	REV__ENST00000547221.1_3_6:31106167-31107440:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.818603515625	2	541.837665	1081.66078	-0.42993	-0.00023295	-0.15861	-8.594E-05	-0.58854	-0.00031889	541.8372318989973	72.442	1.1995	69.945	69.6	70.8	-2.4968					47	22	3	0	0	0	0.027462	1	5855	5855		34.173	5.0025	1	130440	+		36296	27431	29906	29932	39679	39679					0.1232140001393418
LTVLCLFCLV	10	Unmodified	_LTVLCLFCLV_					0	0	0			REV__ENST00000562272.5_1_16:23691188-23701381:+|nuORF	REV__ENST00000562272.5_1_16:23691188-23701381:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.7661743164062	2	562.316331	1122.61811	-0.30092	-0.00016921	2.0721	0.0011652	1.7712	0.00099597	562.3183119031676	42.046	0.25842	42.046	41.897	42.156	0					7	5	2	0	0	0	0.026982	1	2664	2664		23.042	1.0826	1	75744	+		36297	27645	29907	29933	39680	39680					0.0617054556983021
LTVLRKFKV	9	Unmodified	_LTVLRKFKV_					0	0	0		tr|A0A7D6VNM5|A0A7D6VNM5_9CLOTDNApolymeraseIOS=ClostridiumintestinaleOX=36845GN=polAPE=3SV=1	tr|A0A7D6VNM5|A0A7D6VNM5_9CLOTDNApolymeraseIOS=ClostridiumintestinaleOX=36845GN=polAPE=3SV=1	tr|A0A7D6VNM5|A0A7D6VNM5_9CLOTDNApolymeraseIOS=ClostridiumintestinaleOX=36845GN=polAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.3277587890625	2	552.368601	1102.72265	2.1766	0.0012023	0.60418	0.00033373	2.7807	0.001536	552.3694898964645	121.91	0.23551	121.91	121.75	121.99	0					7	4	2	0	0	0	0.027462	1	14035	14035		35.618	1.4457	1	22781			36298	34716	29908	29934	39681	39681					0.1753975143308253
LTVLYCDIK	9	Unmodified	_LTVLYCDIK_					0	0	0			REV__tr|A0A553SKB9|A0A553SKB9_NIACIHistidine--tRNAligaseOS=NialliacirculansOX=1397GN=hisSPE=3SV=1	REV__tr|A0A553SKB9|A0A553SKB9_NIACIHistidine--tRNAligaseOS=NialliacirculansOX=1397GN=hisSPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.8021850585938	2	534.293911	1066.57327	2.6307	0.0014056	-2.0358	-0.0010877	0.59494	0.00031787	534.2924469476275	94.166	1.1088	94.166	93.883	94.992	0					47	25	3	0	0	0	0.027462	1	10334	10334		39.253	15.05	1	630770	+		36299	30107	29909	29935	39682	39682					0.04264438028144468
LTVPNSRI	8	Unmodified	_LTVPNSRI_					0	0	0			REV__ENST00000599753.1_2_19:43406566-43412082:-|nuORF	REV__ENST00000599753.1_2_19:43406566-43412082:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	450.267578125	2	450.269084	898.523616	3.0447	0.0013709	-2.8004	-0.001261	0.24425	0.00010998	450.2677429361468	71.284	1.9614	68.777	67.576	69.537	-2.5071					97	37	4	0	0	0	0.42208	1	5729	5729		85.359	2.0723	1	619310	+		36300	21567	29910	29936	39683	39683					0.07029491134380805
LTVQPPRIL	9	Unmodified	_LTVQPPRIL_					0	0	0			REV__ENST00000436129.2_1_20:60551226-60583162:-|nuORF	REV__ENST00000436129.2_1_20:60551226-60583162:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	518.8290405273438	2	518.829309	1035.64407	-0.53777	-0.00027901	0.10892	5.6512E-05	-0.42884	-0.0002225	518.8292895658562	121.25	2.223	121.05	120.51	122.73	-0.19719					126	44	4	0	0	0	0.24951	1	11703	11703		68.787	0	1	627930	+		36301	18959	29911	29937	39684	39684					0.12766899127996112
LTVSRCLCY	9	Unmodified	_LTVSRCLCY_					0	0	0		nc|ENSG00000114904|P51957-2|NEK4	nc|ENSG00000114904|P51957-2|NEK4	nc|ENSG00000114904|P51957-2|NEK4	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.8077392578125	2	529.262087	1056.50962	1.1093	0.00058711	-0.033454	-1.7706E-05	1.0758	0.00056941	529.7630861293834	121.54	0.31391	120.51	120.22	120.53	-1.0286					8	5	2	0	0	0	0.027462	1	9290	9290		45.952	8.7928	1	5380.2			36302	14972	29912	29938	39685	39685					-0.016372456805811453
LTVSWTIIS	9	Unmodified	_LTVSWTIIS_					0	0	0			REV__ENST00000476395.1_1_20:57015848-57019288:+|nuORF	REV__ENST00000476395.1_1_20:57015848-57019288:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.31231689453125	2	510.292225	1018.5699	1.8119	0.00092458	1.6889	0.00086182	3.5007	0.0017864	510.29280457166055	118.6	0.99067	118.6	118.16	119.15	0					33	20	3	0	0	0	0.027462	1	13567	13567		29.15	1.2673	1	227400	+		36303	26371	29913	29939	39686	39686					0.061355112458159056
LTVTAALTSI	10	Unmodified	_LTVTAALTSI_					0	0	0		ENSG00000110427|ENST00000658780|KIAA1549L;nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L;nc|ENSG00000110427|Q6ZVL6|KIAA1549L	ENSG00000110427|ENST00000658780|KIAA1549L	ENSG00000110427|ENST00000658780|KIAA1549L	MULTI-MSMS	OvCa99_classI_Rep5	1	495.2961730957031	2	495.297507	988.580462	2.3316	0.0011549	-0.28574	-0.00014153	2.0459	0.0010133	495.29729872388947	86.741	1.241	86.741	86.471	87.712	0					87	29	5	0	0	0	0.42962	1	9258	9258		64.207	4.089	1	27454000			36304	2774	29914	29940	39687	39687					0.08571493900228688
LTVTHRTI	8	Unmodified	_LTVTHRTI_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.25592041015625	2	470.782359	939.550165	0.18756	8.8301E-05	-0.90025	-0.00042382	-0.71269	-0.00033552	470.781224443801	51.472	0.44967	48.298	48.123	48.573	-3.1734					11	8	2	0	0	0	0.028476	1	3038	3038		24.203	0	1	22024	+		36305	28942;32737	29915	29941	39688	39688					0.07797180025715988
LTVTIISYLFI	11	Unmodified	_LTVTIISYLFI_					0	0	0		OR5M3|p.I212T|1|0.32|ENSG00000174937|chr11:56469863-56469863|A/G|missense_variant	OR5M3|p.I212T|1|0.32|ENSG00000174937|chr11:56469863-56469863|A/G|missense_variant	OR5M3|p.I212T|1|0.32|ENSG00000174937|chr11:56469863-56469863|A/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8829956054688	2	641.88649	1281.75843	-4.7067	-0.0030211	-1.3474	-0.00086487	-6.0541	-0.003886	641.8854486748878	156.42	0.77325	154.87	154.64	155.41	-1.545					50	23	3	0	0	0	0.72473	1	15472	15472		19.104	2.6304	1	27475			36306	15464	29916	29942	39689	39689					0.12881744099422576
LTVTLKLP	8	Unmodified	_LTVTLKLP_					0	0	0			REV__ENST00000394332.5_1_17:37004194-37006388:-|nuORF	REV__ENST00000394332.5_1_17:37004194-37006388:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	442.7753601074219	2	442.794404	883.574254	0.19717	8.7306E-05	-0.67296	-0.00029798	-0.47579	-0.00021068	442.7940246660907	114.64	0.88837	113.59	113.3	114.19	-1.055					27	17	2	0	0	0	0.028476	1	8472	8472		96.19	0	1	41262	+		36307	15601	29917	29943	39690	39690					0.12781020459362935
LTVTNVVVK	9	Unmodified	_LTVTNVVVK_					0	0	0		CPD-NSRP1|2|fusion;CPD-NSRP1|1|fusion;nc|ENSG00000108582|O75976-2|CPD;ENSG00000108582|ENST00000225719|CPD	CPD-NSRP1|2|fusion	CPD-NSRP1|2|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	486.8100891113281	2	486.808042	971.601532	1.2422	0.00060471	3.065	0.0014921	4.3072	0.0020968	486.80935668338475	129.16	1.5814	128.93	128.62	130.21	-0.22696					73	31	4	0	0	0	0.22621	1	12689	12689		71.877	9.7701	1	189380			36308	674	29918	29944	39691	39691					0.11459503999765275
LTVTQAEII	9	Unmodified	_LTVTQAEII_					0	0	0		tr|A0A7D6VTQ4|A0A7D6VTQ4_9CLOTParBN-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10085PE=4SV=1	tr|A0A7D6VTQ4|A0A7D6VTQ4_9CLOTParBN-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10085PE=4SV=1	tr|A0A7D6VTQ4|A0A7D6VTQ4_9CLOTParBN-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10085PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	494.2911071777344	2	494.289682	986.564812	-0.49242	-0.0002434	0.48786	0.00024114	-0.0045636	-2.2557E-06	494.2896675181	104.73	0.68262	104.73	104.41	105.09	0					25	15	3	0	0	0	0.27001	1	11748	11748		66.429	5.4573	1	804230			36309	35133	29919	29945	39692	39692					0.07099207383191697
LTVTQAEII	9	Unmodified	_LTVTQAEII_					0	0	0		tr|A0A7D6VTQ4|A0A7D6VTQ4_9CLOTParBN-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10085PE=4SV=1	tr|A0A7D6VTQ4|A0A7D6VTQ4_9CLOTParBN-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10085PE=4SV=1	tr|A0A7D6VTQ4|A0A7D6VTQ4_9CLOTParBN-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10085PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.2897033691406	2	494.289682	986.564812	-1.7237	-0.00085202	1.7064	0.00084344	-0.017362	-8.5819E-06	494.2904853885966	107.49	1.1843	105.62	105.33	106.51	-1.8785					45	23	2	0	0	0	0.42676	1	9815	9815		49.442	1.7842	1	380920			36310	35133	29919	29945	39693	39693					0.07099207383191697
LTVVQRQLIAE	11	Unmodified	_LTVVQRQLIAE_					0	0	0			REV__tr|A0A553SLF1|A0A553SLF1_NIACIL-threoninedehydrataseOS=NialliacirculansOX=1397GN=ilvAPE=3SV=1	REV__tr|A0A553SLF1|A0A553SLF1_NIACIL-threoninedehydrataseOS=NialliacirculansOX=1397GN=ilvAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	423.9213562011719	3	423.922355	1268.74524	0.4048	0.00017161	-2.5468	-0.0010796	-2.142	-0.00090803	423.92128381620927	43.861	1.6901	41.151	40.857	42.547	-2.7097					105	33	5	0	0	0	0.70587	1	2503	2503		27.644	4.266	1	640520	+		36311	30221	29920	29946	39694	39694					0.12161306040047748
LTVVTRSPD	9	Unmodified	_LTVVTRSPD_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;HECTD4|p.P3258Rfs*65|1|0.06|ENSG00000173064|chr12:112184791-112184792|-/C|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-2|HECTD4;ENST00000550968.5_1_12:112641421-112665930:-|nuORF	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-MSMS	OvCa99_classI_Rep5	1	494.27783203125	2	494.277106	986.53966	1.952	0.00096483	0.198	9.7869E-05	2.15	0.0010627	494.277135769858	76.526	1.2164	76.526	76.036	77.252	0					65	29	3	0	0	0	0.27001	1	7678	7678		66.429	0	1	2051700			36312	7345	29921	29947	39695	39695					0.04585152580625618
LTVYITAGEL	10	Unmodified	_LTVYITAGEL_					0	0	0			REV__tr|A0A7D6VQY9|A0A7D6VQY9_9CLOTRiboflavinbiosynthesisproteinRibDOS=ClostridiumintestinaleOX=36845GN=ribDPE=3SV=1	REV__tr|A0A7D6VQY9|A0A7D6VQY9_9CLOTRiboflavinbiosynthesisproteinRibDOS=ClostridiumintestinaleOX=36845GN=ribDPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	540.3037719726562	2	540.30279	1078.59103	-0.4403	-0.0002379	-1.8833	-0.0010175	-2.3236	-0.0012554	540.3015848133481	69.567	0.57646	69.567	69.307	69.883	0					46	13	5	0	0	0	0.52321	1	6612	6612		51.335	5.3632	1	6574600	+		36313	31372	29922	29948	39696	39696					0.05487476554640125
LTWLTPLIP	9	Unmodified	_LTWLTPLIP_					0	0	0		ENSG00000198763|ENST00000361453|MT-ND2	ENSG00000198763|ENST00000361453|MT-ND2	ENSG00000198763|ENST00000361453|MT-ND2	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.311279296875	2	527.320786	1052.62702	1.4201	0.00074883	2.1191	0.0011174	3.5391	0.0018663	527.3229574118703	122.76	0.87805	122.76	122.4	123.28	0					31	18	4	0	0	0	0.027462	1	14171	14171		31.955	4.0726	1	187860			36314	8870	29923	29949	39697	39697					0.10280978522177975
LTWLTPLIP	9	Unmodified	_LTWLTPLIP_					0	0	0		ENSG00000198763|ENST00000361453|MT-ND2	ENSG00000198763|ENST00000361453|MT-ND2	ENSG00000198763|ENST00000361453|MT-ND2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	527.320786	1052.62702	-0.41309	-0.00021783	-3.6281	-0.0019132	-4.0412	-0.002131	527.3187561431422	122.86	0.79055	122.64	122.36	123.15	-0.21803	-0.058742	-0.00080401	NaN	31.955	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9088.6			36315	8870	29923	29949							0.10280978522177975
LTWLTPLIP	9	Unmodified	_LTWLTPLIP_					0	0	0		ENSG00000198763|ENST00000361453|MT-ND2	ENSG00000198763|ENST00000361453|MT-ND2	ENSG00000198763|ENST00000361453|MT-ND2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	527.320786	1052.62702	-1.335	-0.00070395	-2.8685	-0.0015126	-4.2035	-0.0022166	527.3190562822131	124.09	0.60573	122.7	122.52	123.13	-1.3908	8.369E-05	-2.889E-06	NaN	31.955	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15186			36316	8870	29923	29949							0.10280978522177975
LTWLYLLLG	9	Unmodified	_LTWLYLLLG_					0	0	0			REV__ENST00000491976.1_1_1:31888748-31907043:+|nuORF	REV__ENST00000491976.1_1_1:31888748-31907043:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.7672119140625	2	546.328611	1090.64267	1.3413	0.00073278	-2.936	-0.001604	-1.5947	-0.00087123	546.3269464962204	81.644	0.6869	81.644	81.455	82.141	0					29	16	2	0	0	0	0.027462	1	8491	8491		40.573	2.7611	1	582860	+		36317	21384	29924	29950	39698	39698					0.10097265039212289
LTWQSIPS	8	Unmodified	_LTWQSIPS_					0	0	0			REV__ENST00000372324.5_1_1:44456016-44456214:+|nuORF	REV__ENST00000372324.5_1_1:44456016-44456214:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.2731628417969	2	466.247818	930.481082	-1.8319	-0.00085411	-3.0368	-0.0014159	-4.8686	-0.00227	466.24639694296144	49.87	0.98943	46.728	46.507	47.496	-3.1416					34	18	2	0	0	0	0.028476	1	2849	2849		74.255	28.303	1	140870	+		36318	25000	29925	29951	39699	39699					0.013060960061352489
LTWQSIPS	8	Unmodified	_LTWQSIPS_					0	0	0			REV__ENST00000372324.5_1_1:44456016-44456214:+|nuORF	REV__ENST00000372324.5_1_1:44456016-44456214:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	466.247818	930.481082	-1.0993	-0.00051256	-3.9361	-0.0018352	-5.0354	-0.0023478	466.2457712211068	49.68	0.7447	46.92	46.769	47.514	-2.7603	0.095835	-0.00071724	NaN	74.255	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19827	+		36319	25000	29925	29951							0.013060960061352489
LTWRVLNL	8	Unmodified	_LTWRVLNL_					0	0	0			REV__ENST00000472918.5_1_22:26902745-26908398:-|nuORF	REV__ENST00000472918.5_1_22:26902745-26908398:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	507.814208984375	2	507.808377	1013.6022	-0.96851	-0.00049182	1.2097	0.00061428	0.24116	0.00012246	507.81199809153236	97.179	3.3265	95.419	94.897	98.223	-1.7595					117	64	5	0	0	0	0.20102	8	6402	6394;6402;6408;6414;6425;6431;6449;6456		124.59	30.588	1	1877500	+		36320	26320	29926	29952	39700;39701;39702;39703;39704;39705;39706;39707	39701					0.09594343439448494
LTWVAKIHI	9	Unmodified	_LTWVAKIHI_					0	0	0		tr|A0A7D6ZFL4|A0A7D6ZFL4_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18330PE=3SV=1	tr|A0A7D6ZFL4|A0A7D6ZFL4_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18330PE=3SV=1	tr|A0A7D6ZFL4|A0A7D6ZFL4_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18330PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	540.8307495117188	2	540.831852	1079.64915	2.013	0.0010887	-2.9636	-0.0016028	-0.9506	-0.00051411	540.8302826822948	124.41	3.5435	123.37	123.03	126.57	-1.0377					194	67	5	0	0	0	0.63422	1	9781	9781		27.882	1.1893	1	8697600			36321	35514	29927	29953	39708	39708					0.11251202990615639
LTYADLIPGA	10	Unmodified	_LTYADLIPGA_					0	0	0		ENST00000489345.5_1_20:5990447-6004030:+|nuORF	ENST00000489345.5_1_20:5990447-6004030:+|nuORF	ENST00000489345.5_1_20:5990447-6004030:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.8026123046875	2	517.281857	1032.54916	0.30954	0.00016012	0.27232	0.00014087	0.58187	0.00030099	517.2818769238172	108.98	1.8314	108.75	107.88	109.71	-0.22498					93	34	4	0	0	0	0.026956	1	10159	10159		34.173	7.4796	1	369810			36322	12675	29928	29954	39709	39709					0.03418920866147346
LTYDDYIF	8	Unmodified	_LTYDDYIF_					0	0	0		nc|ENSG00000103546|P23975-3|SLC6A2;ENSG00000103546|ENST00000568943|SLC6A2;nc|ENSG00000103546|P23975-2|SLC6A2	nc|ENSG00000103546|P23975-3|SLC6A2	nc|ENSG00000103546|P23975-3|SLC6A2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.7996215820312	2	525.244941	1048.47533	1.7756	0.00093262	1.5243	0.00080064	3.2999	0.0017333	525.2455075551715	130.05	1.0822	128.57	128.27	129.35	-1.4779					39	21	2	0	0	0	0.028476	1	12541	12541		35.201	0	1	37270			36323	2329	29929	29955	39710	39710					-0.04697047296190249
LTYETGKIN	9	Unmodified	_LTYETGKIN_					0	0	0			REV__nc|ENSG00000106701|Q9BXM9-2|FSD1L	REV__nc|ENSG00000106701|Q9BXM9-2|FSD1L	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.322021484375	2	519.776939	1037.53933	0.69477	0.00036113	-1.0344	-0.00053768	-0.33966	-0.00017655	519.7763970553494	106.16	1.0837	104.81	104.46	105.54	-1.3482					30	20	2	0	0	0	0.027462	1	7510	7510		31.955	6.5047	1	59900	+		36324	17822	29930	29956	39711	39711					0.022057328607843374
LTYFEEDQI	9	Unmodified	_LTYFEEDQI_					0	0	0			REV__ENSG00000178502|ENST00000319121|KLHL11	REV__ENSG00000178502|ENST00000319121|KLHL11	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.2875366210938	2	579.271687	1156.52882	0.86895	0.00050336	-1.7362	-0.0010058	-0.86729	-0.0005024	579.2707770272251	145.27	0.24765	145.27	145.18	145.43	0					6	5	2	0	0	0	0.027462	1	16992	16992		21.96	0	1	14051	+		36325	22061	29931	29957	39712	39712					-0.043182945843454945
LTYFFTAVLIS	11	Unmodified	_LTYFFTAVLIS_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	MULTI-MSMS	OvCa99_classI_Rep5	1	637.8541870117188	2	637.855189	1273.69583	1.2777	0.00081499	-2.2116	-0.0014107	-0.93391	-0.0005957	637.8536983702915	154.1	0.68539	154.1	153.78	154.47	0					42	13	4	0	0	0	0.68021	1	18045	18045		36.447	9.3994	1	641950			36326	973	29932	29958	39713	39713					0.06992598031229136
LTYHKVIHTG	10	Unmodified	_LTYHKVIHTG_					0	0	0		ENSG00000182141|ENST00000356929|ZNF708	ENSG00000182141|ENST00000356929|ZNF708	ENSG00000182141|ENST00000356929|ZNF708	MULTI-SECPEP	OvCa9_classI_Rep3	3	585.3489379882812	2	584.827298	1167.64004	-1.2702	-0.00074287	0.18583	0.00010868	-1.0844	-0.00063419	584.8274492684033	72.733	0.89146	70.218	69.906	70.798	-2.5149					20	17	2	0	0	0	0.027056	1	3557	3557		27.882	5.9224	1	11761			36327	7969	29933	29959	39714	39714					0.06292809634260266
LTYKVKLSFK	10	Unmodified	_LTYKVKLSFK_					0	0	0			REV__tr|A0A7D6VW31|A0A7D6VW31_9CLOTAldose1-epimerasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02385PE=4SV=1	REV__tr|A0A7D6VW31|A0A7D6VW31_9CLOTAldose1-epimerasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02385PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	409.58740234375	3	409.588425	1225.74344	1.9489	0.00079826	-3.9716	-0.0016267	-2.0226	-0.00082844	409.5866589829611	66.281	1.6712	63.335	62.959	64.63	-2.9459					68	32	4	0	0	0	0.6898	1	2712	2712		31.634	3.5528	1	144930	+		36328	31740	29934	29960	39715	39715					0.13960297022049417
LTYKVKLSFK	10	Unmodified	_LTYKVKLSFK_					0	0	0			REV__tr|A0A7D6VW31|A0A7D6VW31_9CLOTAldose1-epimerasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02385PE=4SV=1	REV__tr|A0A7D6VW31|A0A7D6VW31_9CLOTAldose1-epimerasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02385PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	409.588425	1225.74344	2.2059	0.00090353	-4.4628	-0.0018279	-2.2568	-0.00092438	409.586457999301	65.83	1.1456	63.134	62.67	63.816	-2.6958	-0.15755	-0.00059709	NaN	31.634	44	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72932	+		36329	31740	29934	29960							0.13960297022049417
LTYKVKLSFK	10	Unmodified	_LTYKVKLSFK_					0	0	0			REV__tr|A0A7D6VW31|A0A7D6VW31_9CLOTAldose1-epimerasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02385PE=4SV=1	REV__tr|A0A7D6VW31|A0A7D6VW31_9CLOTAldose1-epimerasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02385PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	409.588425	1225.74344	1.1236	0.00046023	-3.3579	-0.0013753	-2.2342	-0.00091511	409.5869057505563	66.896	1.0372	63.405	63	64.037	-3.4902	0.11399	0.0007606	NaN	31.634	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61032	+		36330	31740	29934	29960							0.13960297022049417
LTYLLKLGEL	10	Unmodified	_LTYLLKLGEL_					0	0	0			REV__tr|A0A7D6VVD2|A0A7D6VVD2_9CLOTATP-dependenthelicase/nucleasesubunitAOS=ClostridiumintestinaleOX=36845GN=addAPE=3SV=1	REV__tr|A0A7D6VVD2|A0A7D6VVD2_9CLOTATP-dependenthelicase/nucleasesubunitAOS=ClostridiumintestinaleOX=36845GN=addAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	581.8554077148438	2	581.857732	1161.70091	1.9793	0.0011517	1.9419	0.0011299	3.9213	0.0022816	581.8586381683472	106.45	0.92046	106.45	106.1	107.02	0					51	20	4	0	0	0	0.60504	1	11983	11983		41.427	0.85399	1	1246900	+		36331	31714	29935	29961	39716	39716					0.12652901893852686
LTYMDAQL	8	Unmodified	_LTYMDAQL_					0	0	0		nc|ENSG00000143344|Q9NZL6-2|RGL1;ENSG00000143344|ENST00000360851|RGL1;RGL1|p.K583Sfs*25|1|0.47|ENSG00000143344|chr1:183912261-183912261|A/-|frameshift_variant	nc|ENSG00000143344|Q9NZL6-2|RGL1	nc|ENSG00000143344|Q9NZL6-2|RGL1	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.8206481933594	2	477.733686	953.452819	0.2103	0.00010047	-0.17193	-8.2138E-05	0.038371	1.8331E-05	477.7335218235607	81.304	0.95975	79.655	79.064	80.023	-1.6485					29	18	2	0	0	0	0.028476	1	6843	6843		40.573	16.37	1	21289			36332	5039	29936	29962	39717	39717					-0.02576969965457465
LTYMHWTPK	9	Unmodified	_LTYMHWTPK_					0	0	0			REV__L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|65|1|sense	REV__L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|65|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.284423828125	2	588.797152	1175.57975	1.9032	0.0011206	1.783	0.0010498	3.6862	0.0021704	588.7980676742419	112.84	0.35851	112.84	112.61	112.97	0					11	7	2	0	0	0	0.027455	1	12865	12865		34.173	7.3764	1	104640	+		36333	28527	29937	29963	39718	39718					-0.0010162402047626529
LTYNCCIR	8	Unmodified	_LTYNCCIR_					0	0	0		ENST00000273968.4_1_4:89442461-89442530:-|nuORF	ENST00000273968.4_1_4:89442461-89442530:-|nuORF	ENST00000273968.4_1_4:89442461-89442530:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.3246154785156	2	493.23333	984.452107	-0.044343	-2.1871E-05	2.3626	0.0011653	2.3182	0.0011434	493.2348571381831	79.384	0.14243	76.633	76.514	76.657	-2.7514					4	2	2	0	0	0	0.028476	1	6433	6433		27.882	4.8398	1	19641			36334	10011	29938	29964	39719	39719					-0.040740878861470264
LTYNWLQEI	9	Unmodified	_LTYNWLQEI_					0	0	0		tr|A0A553SPU4|A0A553SPU4_NIACIDEAD/DEAHboxhelicase(Fragment)OS=NialliacirculansOX=1397GN=CEQ21_26950PE=4SV=1	tr|A0A553SPU4|A0A553SPU4_NIACIDEAD/DEAHboxhelicase(Fragment)OS=NialliacirculansOX=1397GN=CEQ21_26950PE=4SV=1	tr|A0A553SPU4|A0A553SPU4_NIACIDEAD/DEAHboxhelicase(Fragment)OS=NialliacirculansOX=1397GN=CEQ21_26950PE=4SV=1	MSMS	OvCa9_classI_Rep4_	4	590.3036499023438	2	590.305864	1178.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.466	1	74.649	74.149	75.149	-2.8165								0	0	0	0.023656	1	6197	6197		98.629	2.5958	1				36335	34087	29939	29965	39720	39720					0.015019947861901528
LTYNWLQEI	9	Unmodified	_LTYNWLQEI_					0	0	0		tr|A0A553SPU4|A0A553SPU4_NIACIDEAD/DEAHboxhelicase(Fragment)OS=NialliacirculansOX=1397GN=CEQ21_26950PE=4SV=1	tr|A0A553SPU4|A0A553SPU4_NIACIDEAD/DEAHboxhelicase(Fragment)OS=NialliacirculansOX=1397GN=CEQ21_26950PE=4SV=1	tr|A0A553SPU4|A0A553SPU4_NIACIDEAD/DEAHboxhelicase(Fragment)OS=NialliacirculansOX=1397GN=CEQ21_26950PE=4SV=1	MSMS	OvCa9_classI_Rep4_	4	590.3038330078125	2	590.305864	1178.59717	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.535	1	74.719	74.219	75.219	-2.8165								0	0	0	0.023656	1	6205	6205		98.629	2.5958	1				36336	34087	29939	29965	39721	39721					0.015019947861901528
LTYTAREII	9	Unmodified	_LTYTAREII_					0	0	0			REV__ENST00000481096.6_1_X:51808851-51809606:-|nuORF	REV__ENST00000481096.6_1_X:51808851-51809606:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3099975585938	2	540.308406	1078.60226	1.25	0.00067539	-0.88154	-0.0004763	0.36846	0.00019908	540.3077955858466	119.23	3.2776	118.2	117.78	121.06	-1.0271					179	64	5	0	0	0	0.37135	1	9107	9107		54.776	5.2403	1	415420	+		36337	20387	29940	29966	39722	39722					0.0661029864882039
LVAAIILKSL	10	Unmodified	_LVAAIILKSL_					0	0	0			REV__tr|A0A553SIG3|A0A553SIG3_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14705PE=4SV=1	REV__tr|A0A553SIG3|A0A553SIG3_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14705PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	520.858642578125	2	520.857535	1039.70052	1.2127	0.00063167	0.43012	0.00022403	1.6429	0.0008557	520.8575642187827	125.52	1.0096	125.52	125.17	126.18	0					56	23	4	0	0	0	0.3094	1	14516	14516		79.713	10.866	1	695400	+		36338	29890	29941	29967	39723	39723					0.18225526964647543
LVAALARPD	9	Unmodified	_LVAALARPD_					0	0	0			REV__ENSG00000128564|ENST00000249330|VGF	REV__ENSG00000128564|ENST00000249330|VGF	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.2778015136719	2	463.276909	924.539266	-1.4006	-0.00064887	1.2851	0.00059537	-0.11548	-5.3499E-05	463.277397939556	95.253	1.9586	92.784	91.86	93.819	-2.4685					74	38	3	0	0	0	0.36502	1	8375	8375		55.504	2.1528	1	449030	+		36339	18857	29942	29968	39724	39724					0.07397777651419801
LVAAQRDL	8	Unmodified	_LVAAQRDL_					0	0	0			REV__nc|ENSG00000293505|Q96P88|GNRHR2	REV__nc|ENSG00000293505|Q96P88|GNRHR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	442.72894287109375	2	443.261259	884.507966	0.94514	0.00041894	-1.2175	-0.00053967	-0.27237	-0.00012073	443.2605894742734	60.709	0.7212	60.709	60.392	61.113	0					31	16	3	0	0	0	0.028476	1	5312	5312		35.201	6.0512	1	664750	+		36340	29226	29943	29969	39725	39725					0.0610920461731439
LVAEFSSVF	9	Unmodified	_LVAEFSSVF_					0	0	0		ENSG00000204480|ENST00000376101|PRAMEF19	ENSG00000204480|ENST00000376101|PRAMEF19	ENSG00000204480|ENST00000376101|PRAMEF19	MULTI-MSMS	OvCa9_classI_Rep3	3	499.7649230957031	2	499.7633	997.512048	0.8461	0.00042285	2.5175	0.0012581	3.3636	0.001681	499.7649286167221	127.27	5.5139	126.2	124.35	129.86	-1.0715					229	108	5	0	0	0	0.42057	1	10060	10060		50.025	9.4519	1	11725000			36341	8991	29944	29970	39726	39726					0.013192493203973754
LVAEKITK	8	Unmodified	_LVAEKITK_					0	0	0			REV__ENST00000438116.2_1_22:40983448-40983622:-|nuORF	REV__ENST00000438116.2_1_22:40983448-40983622:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	451.28936767578125	2	451.289485	900.564418	2.1691	0.00097888	-2.3497	-0.0010604	-0.18064	-8.152E-05	451.2882720515127	73.11	2.1463	70.71	69.959	72.105	-2.3999					108	40	4	0	0	0	0.55617	1	5946	5946		71.877	0	1	510520	+		36342	25806	29945	29971	39727	39727					0.11015832453983876
LVAEQLLQEL	10	Unmodified	_LVAEQLLQEL_					0	0	0			REV__ENSG00000266074|ENST00000675386|BAHCC1	REV__ENSG00000266074|ENST00000675386|BAHCC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.7619018554688	2	578.334621	1154.65469	1.7352	0.0010035	0.81773	0.00047292	2.5529	0.0014764	578.3351894429042	117.81	0.78922	117.81	117.51	118.3	0					25	16	2	0	0	0	0.02676	1	13499	13499		41.427	0	1	166870	+		36343	23585	29946	29972	39728	39728					0.0835483699179349
LVAEQSGLF	9	Unmodified	_LVAEQSGLF_					0	0	0			REV__ENST00000262158.6_1_18:46476255-46476423:-|nuORF	REV__ENST00000262158.6_1_18:46476255-46476423:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	482.2621154785156	2	482.260925	962.507297	-0.95193	-0.00045908	2.648	0.001277	1.6961	0.00081796	482.2615374307478	57.099	1.3883	54.307	53.584	54.972	-2.7921					48	27	3	0	0	0	0.44294	1	4069	4069		47.916	1.9636	1	151870	+		36344	23969	29947	29973	39729	39729					0.024543651776298248
LVAERWLL	8	Unmodified	_LVAERWLL_					0	0	0		nc|ENSG00000178297|Q7Z410|TMPRSS9;ENSG00000178297|ENST00000696167|TMPRSS9	nc|ENSG00000178297|Q7Z410|TMPRSS9	nc|ENSG00000178297|Q7Z410|TMPRSS9	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.3063659667969	2	500.302927	998.591301	0.68696	0.00034369	2.534	0.0012678	3.221	0.0016115	500.3040616545028	96.797	1.7137	94.371	93.964	95.678	-2.4256					76	33	4	0	0	0	0.39692	1	8548	8548		88.643	6.4024	1	779060			36345	7747	29948	29974	39730	39730					0.09194941065175044
LVAGDRVFEL	10	Unmodified	_LVAGDRVFEL_					0	0	0		tr|A0A553SFY1|A0A553SFY1_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09695PE=4SV=1	tr|A0A553SFY1|A0A553SFY1_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09695PE=4SV=1	tr|A0A553SFY1|A0A553SFY1_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09695PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	559.8165283203125	2	559.813856	1117.61316	0.75444	0.00042235	2.6115	0.0014619	3.3659	0.0018843	559.8149429329505	132.97	1.1835	132.74	132.38	133.56	-0.22696					73	23	4	0	0	0	0.53807	1	13177	13177		49.536	11.725	1	163000			36346	33091	29949	29975	39731	39731					0.05905701023107213
LVAGSNSIVV	10	Unmodified	_LVAGSNSIVV_					0	0	0			REV__ENSG00000100024|ENST00000326010|UPB1	REV__ENSG00000100024|ENST00000326010|UPB1	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.78546142578125	2	479.782025	957.549496	-2.5763	-0.0012361	1.4564	0.00069874	-1.1199	-0.00053732	479.7826429186064	37.219	0.68979	34.509	34.238	34.928	-2.7097					17	13	2	0	0	0	0.026891	1	1626	1626		31.53	0	1	30424	+		36347	17354	29950	29976	39732	39732					0.06902340586009359
LVAIKGGFLSA	11	Unmodified	_LVAIKGGFLSA_					0	0	0			REV__nc|ENSG00000184465|A2RRH5-2|WDR27;REV__ENST00000546525.5_1_6:170034618-170062491:-|nuORF	REV__nc|ENSG00000184465|A2RRH5-2|WDR27	MULTI-MSMS	OvCa9_classI_Rep3	3	538.3262939453125	2	538.329142	1074.64373	-5.6218	-0.0030264	1.9414	0.0010451	-3.6804	-0.0019813	538.3300395836094	158.87	1.4268	157.61	157.3	158.73	-1.267					79	27	5	0	0	0	0.72479	1	13777	13777		18.262	1.7889	1	528870	+		36348	22431;27425	29951	29977	39733	39733					0.10939479408148145
LVAKLEQVL	9	Unmodified	_LVAKLEQVL_					0	0	0			REV__ENSG00000139410|ENST00000403593|SDSL	REV__ENSG00000139410|ENST00000403593|SDSL	MULTI-MSMS	OvCa99_classI_Rep5	1	506.8249816894531	2	506.823692	1011.63283	0.5346	0.00027095	-1.1611	-0.00058847	-0.62649	-0.00031752	506.82301829745086	161.03	0.50174	161.03	160.81	161.31	0					17	9	2	0	0	0	0.33652	1	18871	18871		58.782	2.0609	1	117260	+		36349	19608	29952	29978	39734	39734					0.12748077033870686
LVALISVGLL	10	Unmodified	_LVALISVGLL_					0	0	0		ENSG00000164935|ENST00000297581|DCSTAMP;nc|ENSG00000164935|Q9H295-2|DCSTAMP	ENSG00000164935|ENST00000297581|DCSTAMP	ENSG00000164935|ENST00000297581|DCSTAMP	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.2890930175781	2	499.336436	996.658318	-0.32313	-0.00016135	0.88955	0.00044419	0.56642	0.00028284	499.3369494791171	104.78	0.68964	104.78	104.58	105.27	0					24	15	2	0	0	0	0.026871	1	11798	11798		37.159	0	1	463690			36350	6502	29953	29979	39735	39735					0.15985551556298105
LVALRTKFT	9	Unmodified	_LVALRTKFT_					0	0	0		chr20:36573524-36578741|354|10.25|0.0|19.97|+|1|None,TGIF2-RAB5IF|1	chr20:36573524-36578741|354|10.25|0.0|19.97|+|1|None,TGIF2-RAB5IF|1	chr20:36573524-36578741|354|10.25|0.0|19.97|+|1|None,TGIF2-RAB5IF|1	MULTI-MSMS	OvCa9_classI_Rep3	3	524.8267822265625	2	524.829309	1047.64407	-6.4209	-0.0033699	2.2692	0.001191	-4.1517	-0.0021789	524.8303693371411	156.49	1.5557	155.32	154.95	156.51	-1.1687					100	33	5	0	0	0	0.59983	1	13515	13515		31.955	7.7521	1	1025700			36351	453	29954	29980	39736	39736					0.12214899127980061
LVANLLAADL	10	Unmodified	_LVANLLAADL_					0	0	0			REV__nc|ENSG00000000460|Q9NSG2-3|FIRRM	REV__nc|ENSG00000000460|Q9NSG2-3|FIRRM	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.267822265625	2	506.8055	1011.59645	-2.5652	-0.0013001	1.3884	0.00070363	-1.1768	-0.00059643	506.8060772836301	88.441	0.60783	85.839	85.477	86.085	-2.6027					19	11	2	0	0	0	0.026606	1	7533	7533		44.377	0	1	80134	+		36352	16358	29955	29981	39737	39737					0.0911120013714708
LVANLPYY	8	Unmodified	_LVANLPYY_					0	0	0		tr|A0A7D6VZZ5|A0A7D6VZZ5_9CLOTRibosomalRNAsmallsubunitmethyltransferaseAOS=ClostridiumintestinaleOX=36845GN=rsmAPE=3SV=1;tr|A0A553SHI0|A0A553SHI0_NIACIRibosomalRNAsmallsubunitmethyltransferaseAOS=NialliacirculansOX=1397GN=rsmAPE=3SV=1	tr|A0A7D6VZZ5|A0A7D6VZZ5_9CLOTRibosomalRNAsmallsubunitmethyltransferaseAOS=ClostridiumintestinaleOX=36845GN=rsmAPE=3SV=1	tr|A0A7D6VZZ5|A0A7D6VZZ5_9CLOTRibosomalRNAsmallsubunitmethyltransferaseAOS=ClostridiumintestinaleOX=36845GN=rsmAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.2916564941406	2	476.760561	951.506569	-0.40772	-0.00019438	-3.4691	-0.001654	-3.8769	-0.0018483	476.7588188254344	73.518	1.36	71.119	70.483	71.843	-2.3999					38	25	2	0	0	0	0.028476	1	6069	6069		25.45	1.2474	1	26758			36353	35368	29956	29982	39738	39738					0.028875705285713593
LVAPARGGSM	10	Unmodified	_LVAPARGGSM_					0	0	0			REV__CUTA|p.A113Efs*28|1|0.06|ENSG00000112514|chr6:33417289-33417290|-/CA|frameshift_variant	REV__CUTA|p.A113Efs*28|1|0.06|ENSG00000112514|chr6:33417289-33417290|-/CA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.2310485839844	2	479.760569	957.506586	-0.75049	-0.00036006	1.476	0.00070813	0.72551	0.00034807	479.76091340990774	66.354	0.53724	62.864	62.66	63.198	-3.4902					18	10	3	0	0	0	0.026752	1	4845	4845		53.351	17.733	1	68264	+		36354	16260	29957	29983	39739	39739					0.026132472569315723
LVAPGRPLTL	10	Unmodified	_LVAPGRPLTL_					0	0	0			REV__ENST00000496560.1_1_6:32001776-32002287:+|nuORF	REV__ENST00000496560.1_1_6:32001776-32002287:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.2816772460938	2	518.829309	1035.64407	0.69979	0.00036307	-1.6945	-0.00087913	-0.99466	-0.00051606	518.8285316125981	66.399	1.0919	63.704	63.467	64.559	-2.6958					45	21	3	0	0	0	0.026582	1	5170	5170		51.335	5.3835	1	60784	+		36355	26760	29958	29984	39740	39740					0.12766899127996112
LVAPRAPSAAM	11	Unmodified	_LVAPRAPSAAM_					0	0	0			REV__ENSG00000119147|ENST00000238044|ECRG4	REV__ENSG00000119147|ENST00000238044|ECRG4	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.2855224609375	2	542.302601	1082.59065	0.21342	0.00011574	-1.9343	-0.001049	-1.7209	-0.00093323	542.3014590441311	105.38	0.65635	105.38	105.18	105.83	0					22	14	2	0	0	0	0.025681	1	11881	11881		19.997	10.291	1	455960	+		36356	18428	29959	29985	39741	39741					0.052657783538279546
LVAQKVKS	8	Unmodified	_LVAQKVKS_					0	0	0		TCTN1|p.Y516*|1|0.08|ENSG00000204852|chr12:110647264-110647264|C/-|frameshift_variant;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1;ENST00000397656.8_1_12:111066004-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-5|TCTN1;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-3|TCTN1;ENST00000463313.1_1_12:111078308-111085046:+|nuORF;ENST00000460357.1_1_12:111082772-111083018:+|nuORF	TCTN1|p.Y516*|1|0.08|ENSG00000204852|chr12:110647264-110647264|C/-|frameshift_variant	TCTN1|p.Y516*|1|0.08|ENSG00000204852|chr12:110647264-110647264|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	435.8737487792969	2	436.781828	871.549102	0.6942	0.00030321	4.0981	0.00179	4.7923	0.0020932	436.783482219301	109.82	0.98956	109.65	109.41	110.4	-0.17237					43	19	3	0	0	0	0.028476	1	10410	10410		42.396	6.7778	1	71400			36357	9032	29960	29986	39742	39742					0.10818965656812907
LVARPARTTT	10	Unmodified	_LVARPARTTT_					0	0	0			REV__ENST00000371743.7_1_20:47894865-47895216:+|nuORF	REV__ENST00000371743.7_1_20:47894865-47895216:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7376708984375	2	543.324922	1084.63529	-0.62878	-0.00034163	0.36175	0.00019655	-0.26703	-0.00014508	543.3248394348196	40.182	0.68627	40.182	39.84	40.526	0					26	14	3	0	0	0	0.026871	1	2393	2393		21.96	0	1	268720	+		36358	24987	29961	29987	39743	39743					0.09635925491488706
LVASIDKILS	10	Unmodified	_LVASIDKILS_					0	0	0			REV__tr|A0A553SUM2|A0A553SUM2_NIACIGlycosylaseOS=NialliacirculansOX=1397GN=CEQ21_01770PE=4SV=1	REV__tr|A0A553SUM2|A0A553SUM2_NIACIGlycosylaseOS=NialliacirculansOX=1397GN=CEQ21_01770PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.2984619140625	2	529.826432	1057.63831	2.611	0.0013834	-0.68881	-0.00036495	1.9222	0.0010184	529.8259672324918	89.32	0.39729	89.32	89.119	89.516	0					15	9	2	0	0	0	0.026665	1	9553	9553		34.173	29.267	1	279990	+		36359	31095	29962	29988	39744	39744					0.11179755825673965
LVASSNETPK	10	Unmodified	_LVASSNETPK_					0	0	0			REV__ENSG00000136950|ENST00000353214|ARPC5L	REV__ENSG00000136950|ENST00000353214|ARPC5L	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.3079223632812	2	523.279846	1044.54514	-0.5262	-0.00027535	0.13193	6.9034E-05	-0.39428	-0.00020632	523.2797624265734	30.458	0.29682	30.458	30.285	30.582	0					14	5	3	0	0	0	0.026891	1	1181	1181		18.262	0	1	167930	+		36360	19426	29963	29989	39745	39745					0.02464831372435583
LVATLHPN	8	Unmodified	_LVATLHPN_					0	0	0			REV__nc|ENSG00000166889|Q86TB9-2|PATL1	REV__nc|ENSG00000166889|Q86TB9-2|PATL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	432.9032287597656	2	432.750527	863.486502	-0.25112	-0.00010867	0.72111	0.00031206	0.46999	0.00020339	432.7506554911826	37.745	0.23042	37.745	37.621	37.851	0					6	4	2	0	0	0	0.028476	1	2105	2105		10.866	0	1	6970.3	+		36361	21232	29964	29990	39746	39746					0.049298195886080975
LVATRDVK	8	Unmodified	_LVATRDVK_					0	0	0		ENSG00000116996|ENST00000366570|ZP4	ENSG00000116996|ENST00000366570|ZP4	ENSG00000116996|ENST00000366570|ZP4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	451.2904968261719	2	451.276909	900.539266	0.15755	7.1101E-05	-4.1577	-0.0018763	-4.0001	-0.0018052	451.2750716140428	74.148	0.42087	70.918	70.723	71.144	-3.2308					9	8	2	0	0	0	0.028476	1	5771	5771		96.19	43.891	1	23234			36362	3227	29965	29991	39747	39747					0.08501777651417797
LVATRDVK	8	Unmodified	_LVATRDVK_					0	0	0		ENSG00000116996|ENST00000366570|ZP4	ENSG00000116996|ENST00000366570|ZP4	ENSG00000116996|ENST00000366570|ZP4	MULTI-MATCH	OvCa99_classI_Rep5	1		2	451.276909	900.539266	0.1712	7.726E-05	-0.61507	-0.00027756	-0.44386	-0.0002003	451.27670890561296	71.232	0.43436	71.232	70.954	71.389	0	0.15724	0.0010434	NaN	96.19	17	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	413590			36363	3227	29965	29991							0.08501777651417797
LVAVDKGVFVL	11	Unmodified	_LVAVDKGVFVL_					0	0	0		ENSG00000125730|ENST00000245907|C3;C3|p.Y686Cfs*19|1|0.14|ENSG00000125730|chr19:6707264-6707265|-/AC|frameshift_variant;CON__Q2UVX4	ENSG00000125730|ENST00000245907|C3;CON__Q2UVX4	ENSG00000125730|ENST00000245907|C3	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.337158203125	2	580.357899	1158.70125	-1.2645	-0.00073385	-0.31865	-0.00018493	-1.5831	-0.00091878	580.3577980031507	104.6	0.42168	104.6	104.36	104.79	0					17	9	3	0	0	0	0.02538	1	11698	11698		37.812	13.292	1	377190		+	36364	3725;642	29966	29992	39748	39748					0.12824321613720713
LVAVLWAR	8	Unmodified	_LVAVLWAR_					0	0	0		ENST00000317271.2_1_7:99816887-99817430:+|nuORF;ENST00000451963.1_2_7:99816827-99817049:+|nuORF	ENST00000317271.2_1_7:99816887-99817430:+|nuORF	ENST00000317271.2_1_7:99816887-99817430:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.74090576171875	2	464.292362	926.570172	-0.95726	-0.00044445	3.5513	0.0016489	2.5941	0.0012044	464.2933109557319	73.883	0.23838	70.652	70.531	70.769	-3.2308					8	4	2	0	0	0	0.028476	1	5740	5740		8.8223	0	1	44526			36365	10353	29967	29993	39749	39749					0.10394975756321401
LVAVNNTV	8	Unmodified	_LVAVNNTV_					0	0	0			REV__ENST00000338785.7_1_21:38886149-38886200:+|nuORF	REV__ENST00000338785.7_1_21:38886149-38886200:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.69464111328125	2	415.242535	828.470518	-0.035163	-1.4601E-05	0.3392	0.00014085	0.30403	0.00012625	415.24254247543917	49.516	0.70115	49.516	49.33	50.031	0					20	15	2	0	0	0	0.028476	1	3703	3703		38.806	1.647	1	246600	+		36366	24612	29968	29994	39750	39750					0.04942113351705757
LVAVSLIIFTY	11	Unmodified	_LVAVSLIIFTY_					0	0	0		ENSG00000136908|ENST00000314392|DPM2;ENST00000473360.1_1_9:130698041-130699784:-|nuORF;ENST00000495270.1_1_9:130699601-130700099:-|nuORF	ENSG00000136908|ENST00000314392|DPM2	ENSG00000136908|ENST00000314392|DPM2	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8696899414062	2	619.873382	1237.73221	-3.8587	-0.0023919	-2.4761	-0.0015349	-6.3348	-0.0039268	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.72466	1	15429	15429		19.997	3.99	1	492670			36367	4531	29969	29995	39751	39751					0.12285474927989526
LVAVSLIIFTY	11	Unmodified	_LVAVSLIIFTY_					0	0	0		ENSG00000136908|ENST00000314392|DPM2;ENST00000473360.1_1_9:130698041-130699784:-|nuORF;ENST00000495270.1_1_9:130699601-130700099:-|nuORF	ENSG00000136908|ENST00000314392|DPM2	ENSG00000136908|ENST00000314392|DPM2	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8698120117188	2	619.873382	1237.73221	-2.7857	-0.0017268	-3.6209	-0.0022445	-6.4066	-0.0039713	619.8709153162803	147.4	3.9416	146.45	144.36	148.3	-0.9512					241	78	4	0	0	0	0.72466	1	12555	12555		19.997	0.89325	1	225770			36368	4531	29969	29995	39752	39752					0.12285474927989526
LVAVVVRAE	9	Unmodified	_LVAVVVRAE_					0	0	0			REV__tr|A0A553SNV6|A0A553SNV6_NIACIYlxQfamilyRNA-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_25290PE=4SV=1	REV__tr|A0A553SNV6|A0A553SNV6_NIACIYlxQfamilyRNA-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_25290PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.2843017578125	2	478.300384	954.586216	2.666	0.0012752	-0.24907	-0.00011913	2.417	0.001156	478.30002673127774	75.808	0.43483	75.808	75.601	76.036	0					17	10	2	0	0	0	0.027051	1	7591	7591		79.451	20.669	1	468270	+		36369	30461	29970	29996	39753	39753					0.10710637202566886
LVAWAFSLL	9	Unmodified	_LVAWAFSLL_					0	0	0		nc|ENSG00000126895|P30518-2|AVPR2;ENSG00000126895|ENST00000646375|AVPR2	nc|ENSG00000126895|P30518-2|AVPR2	nc|ENSG00000126895|P30518-2|AVPR2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.8442077636719	2	510.299853	1018.58515	-2.0833	-0.0010631	1.8297	0.00093369	-0.25364	-0.00012943	510.3006747075324	125.53	0.59486	124.12	123.89	124.48	-1.4143					16	11	2	0	0	0	0.027462	1	11923	11923		40.573	1.5511	1	19666			36370	3811	29971	29997	39754	39754					0.07660422833657776
LVAWTLPAPS	10	Unmodified	_LVAWTLPAPS_					0	0	0		ENST00000524141.5_1_8:48625456-48625810:+|nuORF	ENST00000524141.5_1_8:48625456-48625810:+|nuORF	ENST00000524141.5_1_8:48625456-48625810:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.25732421875	2	527.800217	1053.58588	1.5153	0.00079979	-1.1971	-0.00063183	0.31822	0.00016796	527.7993518912763	135.17	0.37115	135.17	134.99	135.36	0					11	7	2	0	0	0	0.026582	1	15750	15750		60.972	13.315	1	35658			36371	13163	29972	29998	39755	39755					0.06123217482695509
LVAYYQMEHR	10	Unmodified	_LVAYYQMEHR_					0	0	0		nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-4|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-3|NCKIPSD;nc|ENSG00000213672|Q9NZQ3-2|NCKIPSD;ENSG00000213672|ENST00000294129|NCKIPSD	nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD	nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD	MULTI-SECPEP	OvCa9_classI_Rep3	3	436.26171875	3	437.216774	1308.62849	1.6987	0.0007427	-4.2114	-0.0018413	-2.5127	-0.0010986	437.54930725404296	64.489	0.25206	61.495	61.344	61.596	-2.9933					7	4	2	0	0	0	0.026968	1	2501	2501		36.447	0	1	4340.6			36372	9140	29973	29999	39756	39756					-0.013477554513656287
LVCAAVVKDL	10	Unmodified	_LVCAAVVKDL_					0	0	0			REV__ENST00000591325.1_1_19:58790629-58791205:+|nuORF	REV__ENST00000591325.1_1_19:58790629-58791205:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.2726440429688	2	515.801903	1029.58925	0.060882	3.1403E-05	-4.0181	-0.0020725	-3.9572	-0.0020411	515.7977457238527	59.797	1.629	56.405	55.953	57.582	-3.392					63	32	3	0	0	0	0.026665	1	4067	4067		42.396	9.5837	1	174790	+		36373	27929	29974	30000	39757	39757					0.07564144265074901
LVCAAVVKDL	10	Unmodified	_LVCAAVVKDL_					0	0	0			REV__ENST00000591325.1_1_19:58790629-58791205:+|nuORF	REV__ENST00000591325.1_1_19:58790629-58791205:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.801903	1029.58925	-0.18991	-9.7958E-05	-7.3504	-0.0037913	-7.5403	-0.0038893	515.7981495206607	59.297	1.1347	56.517	55.888	57.022	-2.7801	0.055873	-0.0002269	NaN	34.173	27	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39342	+		36374	27929	29974	30000							0.07564144265074901
LVCCPFKMLT	10	Unmodified	_LVCCPFKMLT_					0	0	0			REV__nc|ENSG00000196277|Q14831-5|GRM7	REV__nc|ENSG00000196277|Q14831-5|GRM7	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.8334350585938	2	577.792166	1153.56978	-0.11027	-6.3716E-05	-3.507	-0.0020263	-3.6173	-0.0020901	578.2913800805039	114.67	0.32293	114.67	114.51	114.84	0					10	6	2	0	0	0	0.026688	1	13090	13090		40.778	11.629	1	36637	+		36375	22807	29975	30001	39758	39758					-0.0008627134170637873
LVCEYYYKM	9	Unmodified	_LVCEYYYKM_					0	0	0			REV__ENSG00000156017|ENST00000376834|CARNMT1	REV__ENSG00000156017|ENST00000376834|CARNMT1	MULTI-MSMS	OvCa99_classI_Rep5	1	606.279052734375	2	606.277403	1210.54025	1.4929	0.00090511	2.6982	0.0016359	4.1911	0.002541	606.2789907417401	109.76	0.89581	109.76	109.41	110.31	0					38	19	3	0	0	0	0.34496	1	12450	12450		57.811	3.035	1	875920	+		36376	20458	29976	30002	39759	39759					-0.056595120862084514
LVCEYYYKM	9	Unmodified	_LVCEYYYKM_					0	0	0			REV__ENSG00000156017|ENST00000376834|CARNMT1	REV__ENSG00000156017|ENST00000376834|CARNMT1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	606.277403	1210.54025	1.4929	0.00090511	2.6982	0.0016359	4.1911	0.002541	606.2789907417401	109.76	0.89581	109.76	109.41	110.31	0	-0.039188	-0.0044417	NaN	57.811	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	875920	+		36377	20458	29976	30002							-0.056595120862084514
LVCEYYYKM	9	Unmodified	_LVCEYYYKM_					0	0	0			REV__ENSG00000156017|ENST00000376834|CARNMT1	REV__ENSG00000156017|ENST00000376834|CARNMT1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	606.277403	1210.54025	2.5248	0.0015307	8.6939	0.0052709	11.219	0.0068017	606.282524137897	110.91	0.65516	109.8	109.55	110.2	-1.1038	0.0038719	0.0028285	NaN	57.811	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22427	+		36378	20458	29976	30002							-0.056595120862084514
LVCEYYYKM	9	Unmodified	_LVCEYYYKM_					0	0	0			REV__ENSG00000156017|ENST00000376834|CARNMT1	REV__ENSG00000156017|ENST00000376834|CARNMT1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	606.277403	1210.54025	1.1075	0.00067148	11.032	0.0066888	12.14	0.0073602	606.2835043463401	111.35	0.84232	109.83	109.53	110.37	-1.5111	0.035316	0.0056641	NaN	57.811	24	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19737	+		36379	20458	29976	30002							-0.056595120862084514
LVCGKKQI	8	Unmodified	_LVCGKKQI_					0	0	0			REV__nc|ENSG00000124171|Q9BYG5-2|PARD6B	REV__nc|ENSG00000124171|Q9BYG5-2|PARD6B	MULTI-MSMS	OvCa99_classI_Rep5	1	444.7701110839844	2	444.770406	887.526258	-0.038726	-1.7224E-05	-0.38766	-0.00017242	-0.42639	-0.00018964	444.77019874532283	37.092	1.2743	37.092	36.84	38.114	0					65	27	4	0	0	0	0.31087	1	1997	1997		105.27	7.7961	1	3470000	+		36380	28829	29977	30003	39760	39760					0.07799623267669631
LVCHVLTQ	8	Unmodified	_LVCHVLTQ_					0	0	0		ENSG00000175514|ENST00000312457|GPR152	ENSG00000175514|ENST00000312457|GPR152	ENSG00000175514|ENST00000312457|GPR152	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.78045654296875	2	456.752213	911.489873	-0.58523	-0.00026731	-2.067	-0.0009441	-2.6522	-0.0012114	456.7508321375689	80.545	0.68353	77.834	77.516	78.199	-2.7106					15	13	2	0	0	0	0.028476	1	6614	6614		35.201	27.51	1	28649			36381	7550	29978	30004	39761	39761					0.03058746370948029
LVCKFNIWQ	9	Unmodified	_LVCKFNIWQ_					0	0	0			REV__ENST00000336032.3_1_6:89794159-89794297:+|nuORF	REV__ENST00000336032.3_1_6:89794159-89794297:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	575.8519287109375	2	575.807519	1149.60049	0.91652	0.00052774	-1.7722	-0.0010204	-0.85566	-0.0004927	575.8057558812282	87.887	0.38902	86.455	86.139	86.528	-1.4311					10	7	2	0	0	0	0.027462	1	7689	7689		33.516	9.9929	1	42622	+		36382	24582	29979	30005	39762	39762					0.03166966359185608
LVCKGPELSW	10	Unmodified	_LVCKGPELSW_					0	0	0			REV__ENSG00000015676|ENST00000355451|NUDCD3	REV__ENSG00000015676|ENST00000355451|NUDCD3	MULTI-MSMS	OvCa9_classI_Rep2	2	566.3004150390625	2	566.296985	1130.57942	-0.94413	-0.00053466	2.0176	0.0011426	1.0735	0.00060792	566.2979066209101	99.965	2.3305	99.134	98.418	100.75	-0.83051					77	46	4	0	0	0	0.59317	1	9169	9169		42.864	2.0861	1	343040	+		36383	16522	29980	30006	39763	39763					0.019349562596744363
LVCLILFGK	9	Unmodified	_LVCLILFGK_					0	0	0		tr|A0A553SPT0|A0A553SPT0_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_26785PE=3SV=1	tr|A0A553SPT0|A0A553SPT0_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_26785PE=3SV=1	tr|A0A553SPT0|A0A553SPT0_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_26785PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.259765625	2	503.311906	1004.60926	-0.16211	-8.1594E-05	4.1738	0.0021007	4.0117	0.0020191	503.31368081904884	69.368	0.56665	69.368	69.145	69.712	0					25	13	3	0	0	0	0.027462	1	6617	6617		26.796	2.5934	1	1271500			36384	34081	29981	30007	39764	39764					0.10713939995684996
LVCPCLLVL	9	Unmodified	_LVCPCLLVL_					0	0	0			REV__nc|ENSG00000162885|Q8NCR0-2|B3GALNT2	REV__nc|ENSG00000162885|Q8NCR0-2|B3GALNT2	MULTI-MSMS	OvCa9_classI_Rep2	2	486.78369140625	2	486.784667	971.554781	-0.097442	-4.7433E-05	-4.1487	-0.0020195	-4.2462	-0.002067	486.78173231785576	73.585	1.8326	71.185	70.167	72	-2.3999					51	34	2	0	0	0	0.42921	1	5993	5993		49.211	1.5535	1	551590	+		36385	20787	29982	30008	39765	39765					0.0678660485260707
LVCRVSNRG	9	Unmodified	_LVCRVSNRG_					0	0	0		AMER2|p.R647C|1|0.27|ENSG00000165566|chr13:25169681-25169681|G/A|missense_variant	AMER2|p.R647C|1|0.27|ENSG00000165566|chr13:25169681-25169681|G/A|missense_variant	AMER2|p.R647C|1|0.27|ENSG00000165566|chr13:25169681-25169681|G/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	502.300537109375	2	502.276918	1002.53928	-0.50748	-0.0002549	-3.7737	-0.0018955	-4.2812	-0.0021504	502.2757390149437	114.23	0.24636	114.11	114.01	114.26	-0.11777					5	4	2	0	0	0	0.027462	1	10863	10863		23.042	0	1	7409.6			36386	86	29983	30009	39766	39766					0.03811454379774659
LVCVPSLVN	9	Carbamidomethyl (C)	_LVC(Carbamidomethyl (C))VPSLVN_	LVC(1)VPSLVN		LVC(100)VPSLVN		0	1	0			REV__TGIF2|p.L127Pfs*36|1|0.04|ENSG00000118707|chr20:36591094-36591095|-/G|frameshift_variant	REV__TGIF2|p.L127Pfs*36|1|0.04|ENSG00000118707|chr20:36591094-36591095|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.3016052246094	2	500.778428	999.542302	-0.87986	-0.00044062	-0.11285	-5.6511E-05	-0.99271	-0.00049713	500.7780429413518	103.91	2.1768	101.79	101.07	103.25	-2.1192					76	41	3	0	0	0	0.027051	1	9460	9460		102.77	9.5779	1	240600	+		36387	29497	29984	30010	39767	39767	362				0.04251284713916448
LVCVVLVIT	9	Unmodified	_LVCVVLVIT_					0	0	0			REV__ENSG00000268182|ENST00000598409|SMIM17	REV__ENSG00000268182|ENST00000598409|SMIM17	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.787353515625	2	479.803914	957.593275	-0.60705	-0.00029126	-0.78527	-0.00037677	-1.3923	-0.00066804	479.80338400623594	77.386	0.57332	75.597	75.364	75.937	-1.7894					14	10	2	0	0	0	0.027456	1	6448	6448		38.806	13.356	1	19776	+		36388	23596	29985	30011	39768	39768					0.112782337587646
LVDAGFTTSV	10	Unmodified	_LVDAGFTTSV_					0	0	0		ENSG00000237988|ENST00000641137|OR2I1P;nc|ENSG00000237988|Q8NGU4|OR2I1P	ENSG00000237988|ENST00000641137|OR2I1P	ENSG00000237988|ENST00000641137|OR2I1P	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.28607177734375	2	505.263665	1008.51278	0.76599	0.00038703	-0.44509	-0.00022489	0.32091	0.00016214	505.2629695420076	84.867	0.67914	82.221	81.931	82.61	-2.6463					36	13	3	0	0	0	0.02661	1	7115	7115		58.782	0	1	110050			36389	9321	29986	30012	39769	39769					0.008860439694217348
LVDAGFTTSV	10	Unmodified	_LVDAGFTTSV_					0	0	0		ENSG00000237988|ENST00000641137|OR2I1P;nc|ENSG00000237988|Q8NGU4|OR2I1P	ENSG00000237988|ENST00000641137|OR2I1P	ENSG00000237988|ENST00000641137|OR2I1P	MULTI-MATCH	OvCa9_classI_Rep2	2		2	505.263665	1008.51278	-1.0386	-0.00052477	3.0812	0.0015568	2.0426	0.0010321	505.2644607832869	83.957	1.0642	82.411	81.784	82.848	-1.5462	0.095056	0.0023672	NaN	64.207	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30416			36390	9321	29986	30012							0.008860439694217348
LVDDVLIVK	9	Unmodified	_LVDDVLIVK_					0	0	0			REV__tr|A0A553SP71|A0A553SP71_NIACIBifunctionalproteinPyrROS=NialliacirculansOX=1397GN=pyrRPE=3SV=1	REV__tr|A0A553SP71|A0A553SP71_NIACIBifunctionalproteinPyrROS=NialliacirculansOX=1397GN=pyrRPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.3152160644531	2	507.3157	1012.61685	0.32618	0.00016548	-0.63592	-0.00032261	-0.30973	-0.00015713	507.31512790226435	114.41	1.3349	113.02	112.34	113.67	-1.3977					45	25	3	0	0	0	0.33652	1	10631	10631		58.782	2.0609	1	89952	+		36391	30503	29987	30013	39770	39770					0.11104370796954299
LVDEAWQGQ	9	Unmodified	_LVDEAWQGQ_					0	0	0			REV__nc|ENSG00000204520|Q29983-2|MICA	REV__nc|ENSG00000204520|Q29983-2|MICA	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.8058471679688	2	523.251089	1044.48762	0.049796	2.6056E-05	0.99223	0.00051919	1.042	0.00054524	523.2514508785466	93.753	1.5787	92.653	92.174	93.752	-1.0995					43	30	2	0	0	0	0.027462	1	8345	8345		44.117	0	1	113040	+		36392	23165	29988	30014	39771	39771					-0.032840108331583906
LVDEPTVEE	9	Unmodified	_LVDEPTVEE_					0	0	0			REV__ENST00000528224.1_1_11:66616372-66617354:-|nuORF	REV__ENST00000528224.1_1_11:66616372-66617354:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	515.75	2	515.750587	1029.48662	0.44781	0.00023096	1.7058	0.00087977	2.1536	0.0011107	515.7513503783326	132.24	1.5304	131.12	130.79	132.32	-1.1249					72	30	3	0	0	0	0.52083	1	10608	10608		40.573	0	1	308860	+		36393	21789	29989	30015	39772	39772					-0.026942699926848945
LVDGRNAF	8	Unmodified	_LVDGRNAF_					0	0	0			REV__FBN2|p.C1323Afs*9|1|0.05|ENSG00000138829|chr5:128335176-128335176|A/-|frameshift_variant	REV__FBN2|p.C1323Afs*9|1|0.05|ENSG00000138829|chr5:128335176-128335176|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	446.2396545410156	2	446.237784	890.461016	0.32917	0.00014689	-0.61049	-0.00027243	-0.28132	-0.00012554	446.23745887869813	54.356	1.2664	54.356	54.048	55.315	0					82	29	4	0	0	0	0.57878	2	4367	4367;4397		68.485	2.6815	1	13170000	+		36394	19581	29990	30016	39773;39774	39773					0.011403450661759962
LVDILPEIK	9	Unmodified	_LVDILPEIK_					0	0	0		ENSG00000174990|ENST00000649794|CA5A	ENSG00000174990|ENST00000649794|CA5A	ENSG00000174990|ENST00000649794|CA5A	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.7415161132812	2	520.323525	1038.6325	-0.59768	-0.00031099	-2.4498	-0.0012747	-3.0475	-0.0015857	520.3222778048362	56.604	0.49638	56.604	56.422	56.918	0					17	11	2	0	0	0	0.027462	1	4685	4685		53.351	18.151	1	627120			36395	7505	29991	30017	39775	39775					0.11472657313993295
LVDKILAMRVL	11	Unmodified	_LVDKILAMRVL_					0	0	0			REV__ENST00000567567.5_1_15:31233675-31258111:-|nuORF	REV__ENST00000567567.5_1_15:31233675-31258111:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	424.26922607421875	3	424.268698	1269.78426	2.1849	0.00092699	0.81372	0.00034523	2.9986	0.0012722	424.26901414012116	62.593	1.0533	59.559	59.313	60.366	-3.0339					48	20	4	0	0	0	0.71321	1	2269	2269		25.126	2.5644	1	93226	+		36396	21236	29992	30018	39776	39776					0.1601631507003276
LVDKRCCLL	9	2 Carbamidomethyl (C)	_LVDKRC(Carbamidomethyl (C))C(Carbamidomethyl (C))LL_	LVDKRC(1)C(1)LL		LVDKRC(69)C(69)LL		0	2	0			REV__ENSG00000163312|ENST00000295488|HELQ	REV__ENSG00000163312|ENST00000295488|HELQ	MULTI-MSMS	OvCa9_classI_Rep4_	4	588.81591796875	2	588.815018	1175.61548	1.1221	0.00066071	1.4522	0.0008551	2.5743	0.0015158	588.8157526868016	129.31	1.285	127.85	127.45	128.73	-1.4565					57	25	3	0	0	0	0.24951	1	12389	12389		68.787	10.005	1	201630	+		36397	20825	29993	30019	39777	39777	227;228				0.03470090164910289
LVDKRVLPEV	10	Unmodified	_LVDKRVLPEV_					0	0	0		tr|A0A7D6ZI59|A0A7D6ZI59_9CLOTUPF0735ACTdomain-containingproteinHZF06_05800OS=ClostridiumintestinaleOX=36845GN=HZF06_05800PE=3SV=1	tr|A0A7D6ZI59|A0A7D6ZI59_9CLOTUPF0735ACTdomain-containingproteinHZF06_05800OS=ClostridiumintestinaleOX=36845GN=HZF06_05800PE=3SV=1	tr|A0A7D6ZI59|A0A7D6ZI59_9CLOTUPF0735ACTdomain-containingproteinHZF06_05800OS=ClostridiumintestinaleOX=36845GN=HZF06_05800PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3568115234375	2	584.358431	1166.70231	-1.7162	-0.0010029	-1.68	-0.00098173	-3.3962	-0.0019846	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.762	1	14147	14147		23.523	0.48021	1	833330			36398	35605	29994	30020	39778	39778					0.12562535982578993
LVDLLAKGD	9	Unmodified	_LVDLLAKGD_					0	0	0			REV__nc|ENSG00000160145|O60229|KALRN	REV__nc|ENSG00000160145|O60229|KALRN	MULTI-MSMS	OvCa99_classI_Rep5	1	472.2747802734375	2	472.276575	942.538597	0.16047	7.5785E-05	-2.794	-0.0013196	-2.6336	-0.0012438	472.2748850860452	31.111	0.57981	31.111	30.979	31.559	0					20	11	3	0	0	0	0.59983	1	1255	1255		31.955	2.1133	1	234590	+		36399	20640	29995	30021	39779	39779					0.06502938211713172
LVDLRDAE	8	Unmodified	_LVDLRDAE_					0	0	0			REV__nc|ENSG00000181322|Q86XW9-2|NME9	REV__nc|ENSG00000181322|Q86XW9-2|NME9	MULTI-MSMS	OvCa99_classI_Rep5	1	465.7480773925781	2	465.748182	929.481811	1.4063	0.00065498	-1.4782	-0.00068847	-0.071925	-3.3499E-05	465.7473966797746	146.77	0.49146	146.77	146.57	147.06	0					16	9	2	0	0	0	0.65062	1	17170	17170		53.351	2.016	1	30177	+		36400	22227	29996	30022	39780	39780					0.014248906551870277
LVDQYPTI	8	Unmodified	_LVDQYPTI_					0	0	0		tr|A0A7D6VR28|A0A7D6VR28_9CLOTPeptidoglycanDD-metalloendopeptidasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23740PE=4SV=1	tr|A0A7D6VR28|A0A7D6VR28_9CLOTPeptidoglycanDD-metalloendopeptidasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23740PE=4SV=1	tr|A0A7D6VR28|A0A7D6VR28_9CLOTPeptidoglycanDD-metalloendopeptidasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23740PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.6100158691406	2	474.755475	947.496398	1.4562	0.00069135	-2.7507	-0.0013059	-1.2945	-0.00061455	474.7539116998166	79.248	0.27546	79.248	79.119	79.394	0					9	6	2	0	0	0	0.028476	1	8087	8087		71.296	23.638	1	228800			36401	34889	29997	30023	39781	39781					0.020549628033450063
LVDRDPPLR	9	Unmodified	_LVDRDPPLR_					0	0	0			REV__ENST00000358157.2_1_9:91616444-91616663:+|nuORF	REV__ENST00000358157.2_1_9:91616444-91616663:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.2866821289062	2	540.811648	1079.60874	2.6912	0.0014554	3.1309	0.0016932	5.8221	0.0031487	540.813281553482	86.584	0.41212	86.584	86.389	86.801	0					15	9	2	0	0	0	0.027462	1	9112	9112		42.396	14.514	1	200590	+		36402	24794	29998	30024	39782	39782					0.07212236600162214
LVDRITALRC	10	Unmodified	_LVDRITALRC_					0	0	0		nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001-3|DST	MULTI-MSMS	OvCa99_classI_Rep5	1	580.336181640625	2	580.334433	1158.65431	-1.2607	-0.00073163	0.16222	9.4139E-05	-1.0985	-0.00063749	580.3344939595904	104.52	2.9963	104.52	103.89	106.89	0					197	68	6	0	0	0	0.49558	1	11752	11752		54.776	1.4249	1	65637000			36403	15096	29999	30025	39783	39783					0.08133138790890371
LVDSVKKTSY	10	Unmodified	_LVDSVKKTSY_					0	0	0			REV__nc|ENSG00000065357|P23743-2|DGKA	REV__nc|ENSG00000065357|P23743-2|DGKA	MULTI-MSMS	OvCa99_classI_Rep5	1	570.3174438476562	2	570.318971	1138.62339	-0.66674	-0.00038025	-2.6387	-0.0015049	-3.3054	-0.0018852	570.3175200144186	33.849	0.85927	33.849	33.632	34.491	0					39	17	4	0	0	0	0.59317	1	1603	1603		42.864	6.4175	1	2267700	+		36404	16790	30000	30026	39784	39784					0.05962263957690084
LVDVFTSSF	9	Unmodified	_LVDVFTSSF_					0	0	0		tr|A0A7D7A077|A0A7D7A077_9CLOTNfeDfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09205PE=4SV=1	tr|A0A7D7A077|A0A7D7A077_9CLOTNfeDfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09205PE=4SV=1	tr|A0A7D7A077|A0A7D7A077_9CLOTNfeDfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09205PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7627258300781	2	507.760758	1013.50696	0.48572	0.00024663	3.4576	0.0017556	3.9433	0.0020022	507.76242082287587	126.44	3.901	126.2	123.43	127.33	-0.2359					157	78	4	0	0	0	0.25214	1	12379	12379		68.485	8.1907	1	953460			36405	35989	30001	30027	39785	39785					0.0007494545776580708
LVEEAGVTAAA	11	Unmodified	_LVEEAGVTAAA_					0	0	0			REV__ENST00000332235.7_1_19:406195-406477:-|nuORF	REV__ENST00000332235.7_1_19:406195-406477:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	515.7734985351562	2	515.774396	1029.53424	0.6844	0.000353	-0.88489	-0.0004564	-0.20049	-0.00010341	515.7739065708082	110.02	1.9535	108.87	108.45	110.41	-1.1444					80	37	3	0	0	0	0.1183	1	7928	7928		93.195	2.8256	1	355220	+		36406	24544	30002	30028	39786	39786					0.020654289981621332
LVEEFQIHF	9	Unmodified	_LVEEFQIHF_					0	0	0			REV__ENSG00000155085|ENST00000424296|AK9	REV__ENSG00000155085|ENST00000424296|AK9	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.859130859375	2	581.300581	1160.58661	0.52541	0.00030542	0.5733	0.00033326	1.0987	0.00063868	581.2999401734997	153.6	0.58438	153.6	153.25	153.83	0					22	11	3	0	0	0	0.027462	1	18013	18013		30.504	11.4	1	34579	+		36407	20411	30003	30029	39787	39787					0.012740121317619924
LVEEQRAPI	9	Unmodified	_LVEEQRAPI_					0	0	0			REV__tr|A0A553SQ52|A0A553SQ52_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20010PE=4SV=1	REV__tr|A0A553SQ52|A0A553SQ52_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20010PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3279418945312	2	527.798206	1053.58186	1.8448	0.00097367	1.1212	0.00059179	2.966	0.0015655	527.7987622446215	92.954	0.50215	92.954	92.677	93.179	0					26	11	4	0	0	0	0.027461	1	10063	10063		40.778	0	1	466770	+		36408	30608	30004	30030	39788	39788					0.057211279889770594
LVEGTAPNYT	10	Unmodified	_LVEGTAPNYT_					0	0	0			REV__tr|A0A553SSS4|A0A553SSS4_NIACIAldehydedehydrogenasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_03565PE=3SV=1	REV__tr|A0A553SSS4|A0A553SSS4_NIACIAldehydedehydrogenasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_03565PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	532.7630004882812	2	532.766571	1063.51859	-2.5391	-0.0013527	-4.0703	-0.0021685	-6.6094	-0.0035212	532.7645469241053	118.72	1.6329	118.57	117.94	119.57	-0.14755					101	32	5	0	0	0	0.6104	1	11427	11427		40.778	3.6191	1	241770	+		36409	30872	30005	30031	39789	39789					-0.010628575189002731
LVEGTAPNYT	10	Unmodified	_LVEGTAPNYT_					0	0	0			REV__tr|A0A553SSS4|A0A553SSS4_NIACIAldehydedehydrogenasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_03565PE=3SV=1	REV__tr|A0A553SSS4|A0A553SSS4_NIACIAldehydedehydrogenasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_03565PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.7626342773438	2	532.766571	1063.51859	-2.3357	-0.0012444	-4.3047	-0.0022934	-6.6404	-0.0035378	532.7643813734192	119.79	1.6656	118.45	117.88	119.55	-1.3444					90	31	5	0	0	0	0.5675	1	11264	11264		45.972	3.4978	1	553200	+		36410	30872	30005	30031	39790	39790					-0.010628575189002731
LVEHHPHLG	9	Unmodified	_LVEHHPHLG_					0	0	0		GRB10|p.E264Dfs*24|1|0.08|ENSG00000106070|chr7:50618121-50618125|TCTGT/-|frameshift_variant;nc|ENSG00000106070|Q13322-3|GRB10;nc|ENSG00000106070|Q13322-2|GRB10;nc|ENSG00000106070|Q13322-4|GRB10;ENSG00000106070|ENST00000401949|GRB10	GRB10|p.E264Dfs*24|1|0.08|ENSG00000106070|chr7:50618121-50618125|TCTGT/-|frameshift_variant	GRB10|p.E264Dfs*24|1|0.08|ENSG00000106070|chr7:50618121-50618125|TCTGT/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.3125	2	519.777608	1037.54066	0.68974	0.00035851	4.3414	0.0022566	5.0311	0.0026151	520.2826213417936	80.906	0.54697	80.906	80.659	81.206	0					14	12	2	0	0	0	0.027462	1	8284	8284		37.028	5.0736	1	173300			36411	2526	30006	30032	39791	39791					0.023394117401721815
LVEIFSEVWG	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))LVEIFSEVWG_					1	0	0		ENST00000493442.1_1_X:103434984-103435086:+|nuORF	ENST00000493442.1_1_X:103434984-103435086:+|nuORF	ENST00000493442.1_1_X:103434984-103435086:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	610.8185424804688	2	610.813522	1219.61249	0.4134	0.00025251	4.4441	0.0027145	4.8575	0.002967	610.8160963482944	47.828	1.9509	44.72	44.384	46.335	-3.1077					98	37	4	0	0	0	0.58282	1	2608	2608		44.117	6.9577	1	447190			36412	12736	30007	30033	39792	39792					0.011468615834019147
LVEKAEEAEQ	10	Unmodified	_LVEKAEEAEQ_					0	0	0			REV__ENST00000511640.1_1_5:25909808-25910855:+|nuORF	REV__ENST00000511640.1_1_5:25909808-25910855:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	573.7899169921875	2	573.287868	1144.56118	-0.32525	-0.00018646	-1.0845	-0.00062171	-1.4097	-0.00080817	573.2861870700847	30.25	1.9723	30.25	29.785	31.757	0					139	39	7	0	0	0	0.48198	1	1150	1150		56.721	1.9447	1	13380000	+		36413	26962	30008	30034	39793	39793					-0.005315071813356553
LVEKAKGILM	10	Unmodified	_LVEKAKGILM_					0	0	0		tr|A0A7D6ZXY3|A0A7D6ZXY3_9CLOTANTARdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00985PE=4SV=1	tr|A0A7D6ZXY3|A0A7D6ZXY3_9CLOTANTARdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00985PE=4SV=1	tr|A0A7D6ZXY3|A0A7D6ZXY3_9CLOTANTARdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00985PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	551.3358154296875	2	551.338652	1100.66275	1.4036	0.00077385	-2.4963	-0.0013763	-1.0928	-0.00060248	551.3371855863636	130.14	0.56995	130.14	129.91	130.48	0					24	11	3	0	0	0	0.53885	1	15094	15094		49.442	1.482	1	238110			36414	35898	30009	30035	39794	39794					0.11644692707523063
LVEKCLPTRGT	11	Unmodified	_LVEKCLPTRGT_					0	0	0			REV__ENSG00000169375|ENST00000394947|SIN3A	REV__ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	OvCa9_classI_Rep4_	4	608.8359375	2	608.839548	1215.66454	-2.9862	-0.0018181	-1.5855	-0.00096534	-4.5717	-0.0027834	608.8384409530391	152.11	1.417	150.68	150.29	151.71	-1.435					87	30	4	0	0	0	0.69099	1	15040	15040		32.751	2.4328	1	285950	+		36415	21458	30010	30036	39795	39795					0.06533701725447827
LVEKEVLGGN	10	Unmodified	_LVEKEVLGGN_					0	0	0			REV__nc|ENSG00000008710|P98161-2|PKD1	REV__nc|ENSG00000008710|P98161-2|PKD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.345947265625	2	529.298039	1056.58152	1.6711	0.00088451	0.72286	0.00038261	2.394	0.0012671	529.2985601544937	87.541	0.49966	87.541	87.338	87.838	0					15	11	2	0	0	0	0.026782	1	9304	9304		23.523	0	1	226180	+		36416	16459	30011	30037	39796	39796					0.055497082691545074
LVELGGSVRLE	11	Unmodified	_LVELGGSVRLE_					0	0	0			REV__nc|ENSG00000248546|O43423|ANP32CP	REV__nc|ENSG00000248546|O43423|ANP32CP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	585.7532348632812	2	586.337695	1170.66084	-0.3595	-0.00021079	-0.1479	-8.672E-05	-0.50741	-0.00029751	586.3375059406972	123.35	0.89161	121.98	121.51	122.4	-1.3666					25	17	2	0	0	0	0.02557	1	11612	11612		39.253	1.4413	1	11322	+		36417	29167	30012	30038	39797	39797					0.0823335522331945
LVELGGSVRLE	11	Unmodified	_LVELGGSVRLE_					0	0	0			REV__nc|ENSG00000248546|O43423|ANP32CP	REV__nc|ENSG00000248546|O43423|ANP32CP	MULTI-MATCH	OvCa9_classI_Rep3	3		2	586.337695	1170.66084	-0.066092	-3.8752E-05	0.071763	4.2077E-05	0.0056714	3.3254E-06	586.3377097066012	122.9	0.83992	121.87	121.48	122.32	-1.0286	-0.054219	0.00014002	NaN	31.53	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18851	+		36418	29167	30012	30038							0.0823335522331945
LVELPVEEL	9	Unmodified	_LVELPVEEL_					0	0	0			REV__TBC1D10A|p.A323Pfs*34|1|0.53|ENSG00000099992|chr22:30293734-30293734|C/-|frameshift_variant	REV__TBC1D10A|p.A323Pfs*34|1|0.53|ENSG00000099992|chr22:30293734-30293734|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.3109130859375	2	520.79734	1039.58013	-0.88853	-0.00046274	-0.99501	-0.0005182	-1.8835	-0.00098094	520.7965828520338	83.53	0.38487	81.269	80.917	81.302	-2.261					15	7	3	0	0	0	0.027456	1	4781	4781		57.811	19.005	1	135480	+		36419	17349	30013	30039	39798	39798					0.06192074180376039
LVEMEIIKD	9	Unmodified	_LVEMEIIKD_					0	0	0		tr|A0A553SQT3|A0A553SQT3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07270PE=4SV=1	tr|A0A553SQT3|A0A553SQT3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07270PE=4SV=1	tr|A0A553SQT3|A0A553SQT3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07270PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.30908203125	2	545.29665	1088.57875	-0.54963	-0.00029971	3.8573	0.0021034	3.3077	0.0018037	545.2985947303085	44.595	0.44545	44.595	44.44	44.886	0					17	9	2	0	0	0	0.027462	1	3048	3048		30.504	5.0535	1	223790			36420	34193	30014	30040	39799	39799					0.038001168199798485
LVENEEHSD	9	Unmodified	_LVENEEHSD_					0	0	0		tr|A0A553STS2|A0A553STS2_NIACITerCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05670PE=3SV=1	tr|A0A553STS2|A0A553STS2_NIACITerCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05670PE=3SV=1	tr|A0A553STS2|A0A553STS2_NIACITerCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05670PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.3287963867188	2	536.233093	1070.45163	-0.54628	-0.00029293	-3.7058	-0.0019872	-4.252	-0.0022801	536.7332447109495	60.28	0.54227	56.85	56.601	57.144	-3.43					11	10	2	0	0	0	0.027462	1	4078	4078		29.15	0	1	12755			36421	34525	30016	30041	39800	39800					-0.08077512800650766
LVEPAASRRV	10	Unmodified	_LVEPAASRRV_					0	0	0			REV__ENST00000548254.1_1_12:49075109-49075993:-|nuORF	REV__ENST00000548254.1_1_12:49075109-49075993:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.32373046875	2	549.324922	1096.63529	0.69445	0.00038148	-1.3166	-0.00072326	-0.62217	-0.00034178	549.3241630662727	35.315	2.0009	32.466	31.936	33.937	-2.849					105	39	5	0	0	0	0.5675	1	1142	1142		45.972	5.1941	1	1387800	+		36422	27440	30017	30042	39801	39801					0.0908392549151813
LVEPDIIV	8	Unmodified	_LVEPDIIV_					0	0	0			REV__tr|A0A7D7AF59|A0A7D7AF59_9CLOT3-dehydroquinatesynthaseOS=ClostridiumintestinaleOX=36845GN=aroBPE=3SV=1	REV__tr|A0A7D7AF59|A0A7D7AF59_9CLOT3-dehydroquinatesynthaseOS=ClostridiumintestinaleOX=36845GN=aroBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	449.26910400390625	2	449.268219	896.521884	3.2258	0.0014492	-1.8722	-0.00084112	1.3536	0.00060812	449.26732371902864	112.43	2.5171	112.3	111.93	114.45	-0.12174					121	50	4	0	0	0	0.69415	1	10698	10698		44.531	0	1	1472600	+		36423	32710	30018	30043	39802	39802					0.06948437325763734
LVEPDLVI	8	Unmodified	_LVEPDLVI_					0	0	0		nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;ENST00000583043.5_1_18:67684852-67806940:-|nuORF	nc|ENSG00000176225|Q86VV8-3|RTTN	nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-MSMS	OvCa9_classI_Rep2	2	449.2689208984375	2	449.268219	896.521884	3.2258	0.0014492	-1.8722	-0.00084112	1.3536	0.00060812	449.26732371902864	112.43	2.5171	112.3	111.93	114.45	-0.12174					121	50	4	0	0	0	0.72922	2	10635	10635;10659		37.028	1.8278	1	1472600			36424	7592	30019	30044	39803;39804	39803					0.06948437325752366
LVEPDLVI	8	Unmodified	_LVEPDLVI_					0	0	0		nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;ENST00000583043.5_1_18:67684852-67806940:-|nuORF	nc|ENSG00000176225|Q86VV8-3|RTTN	nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-MSMS	OvCa9_classI_Rep3	3	449.2685852050781	2	449.268219	896.521884	0.9461	0.00042505	0.42185	0.00018952	1.3679	0.00061457	449.26835717612227	113.5	2.9115	112.42	112.15	115.06	-1.0753					133	57	4	0	0	0	0.68312	1	8350	8350		46.766	2.2354	1	1514000			36425	7592	30019	30044	39805	39805					0.06948437325752366
LVEPDLVI	8	Unmodified	_LVEPDLVI_					0	0	0		nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;ENST00000583043.5_1_18:67684852-67806940:-|nuORF	nc|ENSG00000176225|Q86VV8-3|RTTN	nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-MSMS	OvCa9_classI_Rep4_	4	449.2688903808594	2	449.268219	896.521884	1.103	0.00049553	0.22693	0.00010195	1.3299	0.00059748	449.26826553228875	113.95	2.2702	112.5	112.2	114.47	-1.4461					120	44	4	0	0	0	0.72922	2	10586	10586;10611		37.028	1.8278	1	1786500			36426	7592	30019	30044	39806;39807	39806					0.06948437325752366
LVEQLPGKLLE	11	Unmodified	_LVEQLPGKLLE_					0	0	0		ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8683471679688	2	619.871371	1237.72819	-3.1194	-0.0019336	-0.12263	-7.6013E-05	-3.242	-0.0020096	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.72479	1	14739	14739		18.262	0.89712	1	806750			36427	4193	30020	30045	39808	39808					0.11883385434225602
LVERDRAVL	9	Unmodified	_LVERDRAVL_					0	0	0		nc|ENSG00000128918|O94788-4|ALDH1A2;nc|ENSG00000128918|O94788-2|ALDH1A2;nc|ENSG00000128918|O94788-3|ALDH1A2;ENSG00000128918|ENST00000249750|ALDH1A2;ALDH1A2|p.I332Sfs*6|1|0.05|ENSG00000128918|chr15:57963978-57963978|G/-|frameshift_variant;ENST00000559266.5_1_15:58285255-58306437:-|nuORF;ENST00000558595.5_1_15:58304322-58357848:-|nuORF	nc|ENSG00000128918|O94788-4|ALDH1A2	nc|ENSG00000128918|O94788-4|ALDH1A2	MULTI-MSMS	OvCa9_classI_Rep2	2	535.8223266601562	2	535.819473	1069.62439	-1.4267	-0.00076446	0.97666	0.00052332	-0.45004	-0.00024114	535.8198506740164	57.839	1.5468	55.047	54.477	56.024	-2.792					83	30	3	0	0	0	0.46356	1	4158	4158		45.972	1.5951	1	571980			36428	3913	30021	30046	39809	39809					0.09236523117237994
LVERLNMSL	9	Unmodified	_LVERLNMSL_					0	0	0			REV__ENSG00000112739|ENST00000337659|PRPF4B	REV__ENSG00000112739|ENST00000337659|PRPF4B	MSMS	OvCa99_classI_Rep5	1	537.80517578125	2	537.802434	1073.59032	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.45	1	113.45	112.95	113.95	0								0	0	0	0.23988	1	12932	12932		19.997	0	1		+		36429	18115	30022	30047	39810	39810					0.056463586339759786
LVERLPATPEV	11	Unmodified	_LVERLPATPEV_					0	0	0			REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26;REV__ZFYVE26-NEMF|1|fusion	REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-SECPEP	OvCa99_classI_Rep5	1	611.805419921875	2	612.353345	1222.69214	1.1824	0.00072403	0.91526	0.00056046	2.0976	0.0012845	612.3557533896185	154.49	0.25487	154.49	154.42	154.67	0					6	4	2	0	0	0	0.025524	1	18123	18123		33.922	0	1	19938	+		36430	16911;32770	30023	30048	39811	39811					0.08969928257351967
LVERLPSL	8	Unmodified	_LVERLPSL_					0	0	0			REV__ENST00000553724.1_1_14:104194036-104195542:+|nuORF	REV__ENST00000553724.1_1_14:104194036-104195542:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.7796325683594	2	463.78711	925.559667	2.0538	0.00095252	0.21018	9.7478E-05	2.264	0.00105	463.78706424320467	133.88	0.42995	133.88	133.72	134.15	0					11	8	2	0	0	0	0.028476	1	15594	15594		29.15	8.6677	1	32257	+		36431	27517	30024	30049	39812	39812					0.09390948311227021
LVETKRNR	8	Unmodified	_LVETKRNR_					0	0	0		KIF21B|p.H1503Afs*22|1|0.21|ENSG00000116852|chr1:200975607-200975608|-/G|frameshift_variant;nc|ENSG00000116852|O75037-3|KIF21B;ENSG00000116852|ENST00000461742|KIF21B;nc|ENSG00000116852|O75037-2|KIF21B;nc|ENSG00000116852|O75037|KIF21B	KIF21B|p.H1503Afs*22|1|0.21|ENSG00000116852|chr1:200975607-200975608|-/G|frameshift_variant	KIF21B|p.H1503Afs*22|1|0.21|ENSG00000116852|chr1:200975607-200975608|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	508.3026123046875	2	508.30399	1014.59343	-1.2179	-0.00061906	-3.2842	-0.0016694	-4.5021	-0.0022884	508.30222432035663	82.41	2.3047	80.114	79.182	81.487	-2.2963					153	46	5	0	0	0	0.56113	2	4632	4632;4637		71.378	0.17569	1	1883000			36432	3214	30025	30050	39813;39814	39813					0.08671369802993922
LVEVAESKV	9	Unmodified	_LVEVAESKV_					0	0	0		ENST00000307450.10_1_10:99393129-99393228:-|nuORF	ENST00000307450.10_1_10:99393129-99393228:-|nuORF	ENST00000307450.10_1_10:99393129-99393228:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.29766845703125	2	487.281857	972.549162	-0.52	-0.00025339	0.87182	0.00042482	0.35182	0.00017144	487.28234905082115	55.645	0.65331	55.645	55.44	56.094	0					30	15	3	0	0	0	0.027455	1	4549	4549		42.396	8.2236	1	357280			36433	10256	30026	30051	39815	39815					0.0617892086613665
LVEVQKKY	8	Unmodified	_LVEVQKKY_					0	0	0			REV__nc|ENSG00000176208|Q96QE3-2|ATAD5	REV__nc|ENSG00000176208|Q96QE3-2|ATAD5	MULTI-SECPEP	OvCa9_classI_Rep2	2	503.7633972167969	2	503.800217	1005.58588	-0.52353	-0.00026376	0.51501	0.00025946	-0.0085233	-4.294E-06	503.80002401499195	93.351	0.72909	92.183	92.003	92.732	-1.168					20	13	2	0	0	0	0.028476	1	8309	8309		50.025	9.4519	1	33911	+		36434	21939	30027	30052	39816	39816					0.08331217482702868
LVEVQKKY	8	Unmodified	_LVEVQKKY_					0	0	0			REV__nc|ENSG00000176208|Q96QE3-2|ATAD5	REV__nc|ENSG00000176208|Q96QE3-2|ATAD5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	503.800217	1005.58588	-1.3028	-0.00065634	1.2558	0.00063268	-0.046979	-2.3668E-05	503.80033103191823	94.012	0.7119	92.05	91.884	92.595	-1.9617	-0.066076	0.00036865	NaN	50.025	23	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46125	+		36435	21939	30027	30052							0.08331217482702868
LVEYYYKM	8	Unmodified	_LVEYYYKM_					0	0	0		ENSG00000109771|ENST00000505916|LRP2BP;nc|ENSG00000109771|Q9P2M1-2|LRP2BP	ENSG00000109771|ENST00000505916|LRP2BP	ENSG00000109771|ENST00000505916|LRP2BP	MULTI-MSMS	OvCa99_classI_Rep5	1	554.7731323242188	2	554.772811	1107.53107	0.94625	0.00052495	-2.6746	-0.0014838	-1.7283	-0.00095884	554.7712325698486	152.95	0.4847	152.95	152.71	153.2	0					19	9	3	0	0	0	0.7224	1	17920	17920		38.806	9.6566	1	55452			36436	2732	30028	30053	39817	39817					-0.01839537380215006
LVFCLFCW	8	Unmodified	_LVFCLFCW_					0	0	0			REV__ENST00000321341.10_2_18:48473619-48473673:+|nuORF	REV__ENST00000321341.10_2_18:48473619-48473673:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7515869140625	2	515.748085	1029.48162	3.5779	0.0018453	3.1547	0.001627	6.7326	0.0034723	515.7496284830565	132.62	1.8654	131.12	130.75	132.61	-1.5014					104	37	5	0	0	0	0.7363	1	12837	12837		33.493	2.9893	1	443820	+		36437	24446	30029	30054	39818	39818					-0.03194523870024568
LVFEMLEQN	9	Oxidation (M)	_LVFEM(Oxidation (M))LEQN_		LVFEM(1)LEQN		LVFEM(99)LEQN	0	0	1		nc|ENSG00000064393|Q9H2X6-2|HIPK2;nc|ENSG00000064393|Q9H2X6-3|HIPK2;ENSG00000064393|ENST00000406875|HIPK2;HIPK2|p.I875Nfs*8|1|0.04|ENSG00000064393|chr7:139596812-139596813|-/ATTTTTTAAGACCAACATGATTC|frameshift_variant;HIPK1|p.T351Pfs*31|1|0.04|ENSG00000163349|chr1:113941433-113941433|A/-|frameshift_variant;nc|ENSG00000163349|Q86Z02-2|HIPK1;ENSG00000163349|ENST00000426820|HIPK1;nc|ENSG00000110422|Q9H422-2|HIPK3;ENSG00000110422|ENST00000303296|HIPK3	nc|ENSG00000064393|Q9H2X6-2|HIPK2;nc|ENSG00000110422|Q9H422-2|HIPK3	nc|ENSG00000064393|Q9H2X6-2|HIPK2	MULTI-MSMS	OvCa99_classI_Rep5	1	569.7789306640625	2	569.776082	1137.53761	2.247	0.0012803	2.9691	0.0016917	5.2161	0.002972	569.7775897723121	84.887	0.70271	84.887	84.589	85.292	0					35	16	3	0	0	0	0.094616	1	8876	8876		98.629	18.69	1	2064900			36438	1299;2773	30030	30055	39819	39819		48			-0.025656442194986084
LVFFGFLYL	9	Unmodified	_LVFFGFLYL_					0	0	0			REV__tr|A0A553SJX3|A0A553SJX3_NIACIAminoacidtransporterOS=NialliacirculansOX=1397GN=CEQ21_17615PE=4SV=1	REV__tr|A0A553SJX3|A0A553SJX3_NIACIAminoacidtransporterOS=NialliacirculansOX=1397GN=CEQ21_17615PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	559.817626953125	2	559.817879	1117.6212	2.0741	0.0011611	-4.0503	-0.0022674	-1.9761	-0.0011063	559.8156915922438	133.1	8.2265	133.1	132.6	140.83	0					464	175	6	0	0	0	0.32242	4	15727	15453;15530;15727;15797		60.404	10.189	1	47573000	+		36439	30051	30031	30056	39820;39821;39822;39823	39822					0.06709880010498637
LVFFGFLYL	9	Unmodified	_LVFFGFLYL_					0	0	0			REV__tr|A0A553SJX3|A0A553SJX3_NIACIAminoacidtransporterOS=NialliacirculansOX=1397GN=CEQ21_17615PE=4SV=1	REV__tr|A0A553SJX3|A0A553SJX3_NIACIAminoacidtransporterOS=NialliacirculansOX=1397GN=CEQ21_17615PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	559.81591796875	2	559.817879	1117.6212	-0.97773	-0.00054735	-2.8227	-0.0015802	-3.8004	-0.0021276	559.8160584775942	134.25	2.5628	133.13	132.52	135.08	-1.1226					125	51	4	0	0	0	0.53728	1	10834	10834		39.021	5.0999	1	225320	+		36440	30051	30031	30056	39824	39824					0.06709880010498637
LVFFVLAILN	10	Unmodified	_LVFFVLAILN_					0	0	0		ENST00000349736.9_1_20:463717-463870:-|nuORF	ENST00000349736.9_1_20:463717-463870:-|nuORF	ENST00000349736.9_1_20:463717-463870:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.8516845703125	2	574.857535	1147.70052	-1.0153	-0.00058364	-2.6894	-0.001546	-3.7047	-0.0021297	574.855786488577	88.666	1.586	86.535	86.265	87.851	-2.1309					47	31	2	0	0	0	0.026822	1	5519	5519		30.504	6.3009	1	60466			36441	10648	30032	30057	39825	39825					0.13257526964662247
LVFGATGLASI	11	Unmodified	_LVFGATGLASI_					0	0	0			REV__ENST00000471223.1_1_1:3549956-3550340:-|nuORF	REV__ENST00000471223.1_1_1:3549956-3550340:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.2982177734375	2	524.8055	1047.59645	0.47981	0.00025181	-1.8695	-0.00098115	-1.3897	-0.00072934	524.8042422517185	111.77	0.93636	111.63	111.42	112.36	-0.13961					22	18	2	0	0	0	0.02538	1	10627	10627		30.318	0	1	29089	+		36442	26274	30033	30058	39826	39826					0.07455200137110296
LVFGATGLASI	11	Unmodified	_LVFGATGLASI_					0	0	0			REV__ENST00000471223.1_1_1:3549956-3550340:-|nuORF	REV__ENST00000471223.1_1_1:3549956-3550340:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	524.8055	1047.59645	1.1858	0.00062232	-1.8689	-0.00098082	-0.68311	-0.0003585	524.8043383148766	112.69	0.5916	111.61	111.32	111.91	-1.0753	-0.016269	-0.00045877	NaN	37.812	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29033	+		36443	26274	30033	30058							0.07455200137110296
LVFHWARSN	9	Unmodified	_LVFHWARSN_					0	0	0			REV__ENST00000563741.5_1_16:1828298-1832574:-|nuORF	REV__ENST00000563741.5_1_16:1828298-1832574:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	564.3241577148438	2	565.298707	1128.58286	-1.107	-0.0006258	0.93852	0.00053054	-0.16851	-9.5261E-05	565.2988119232534	101.71	1.0404	100.94	100.77	101.81	-0.764					31	20	3	0	0	0	0.027453	1	9341	9341		45.972	9.5255	1	70116	+		36444	20719	30034	30059	39827	39827					0.023713871485597338
LVFIVWHV	8	Unmodified	_LVFIVWHV_					0	0	0		tr|A0A553SK34|A0A553SK34_NIACISuccinatedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_18045PE=4SV=1	tr|A0A553SK34|A0A553SK34_NIACISuccinatedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_18045PE=4SV=1	tr|A0A553SK34|A0A553SK34_NIACISuccinatedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_18045PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.830322265625	2	506.802563	1011.59057	-1.0264	-0.00052018	0.067362	3.4139E-05	-0.95903	-0.00048604	506.8026887387993	66.368	0.58632	62.878	62.66	63.247	-3.4902					21	11	2	0	0	0	0.028476	1	4859	4859		16.705	0	1	42106			36445	33573	30035	30060	39828	39828					0.08524146416118583
LVFIWVISA	9	Unmodified	_LVFIWVISA_					0	0	0			REV__tr|A0A7D6VST5|A0A7D6VST5_9CLOTDUF1189domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00195PE=4SV=1	REV__tr|A0A7D6VST5|A0A7D6VST5_9CLOTDUF1189domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00195PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	524.31298828125	2	524.315503	1046.61645	-0.54782	-0.00028723	-2.0397	-0.0010695	-2.5876	-0.0013567	524.3144059068588	121.52	1.6813	121.32	120.8	122.48	-0.19718					79	33	4	0	0	0	0.39645	1	11764	11764		52.299	2.8576	1	278140	+		36446	31538	30036	30061	39829	39829					0.09500995867756501
LVFKDGEKI	9	Unmodified	_LVFKDGEKI_					0	0	0		tr|A0A553SM44|A0A553SM44_NIACIThioredoxinOS=NialliacirculansOX=1397GN=CEQ21_21810PE=4SV=1	tr|A0A553SM44|A0A553SM44_NIACIThioredoxinOS=NialliacirculansOX=1397GN=CEQ21_21810PE=4SV=1	tr|A0A553SM44|A0A553SM44_NIACIThioredoxinOS=NialliacirculansOX=1397GN=CEQ21_21810PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	524.8058471679688	2	524.8055	1047.59645	-1.0909	-0.00057252	-1.8521	-0.00097202	-2.9431	-0.0015445	524.8041430606991	117.22	1.2891	117.09	116.96	118.25	-0.12869					58	25	3	0	0	0	0.34132	1	11243	11243		58.23	1.5089	1	262990			36447	33799	30037	30062	39830	39830					0.07455200137133033
LVFLAGIALTK	11	Unmodified	_LVFLAGIALTK_					0	0	0		ENSG00000197020|ENST00000358296|ZNF100	ENSG00000197020|ENST00000358296|ZNF100	ENSG00000197020|ENST00000358296|ZNF100	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.3125	2	573.368267	1144.72198	-0.21737	-0.00012463	-2.2135	-0.0012692	-2.4309	-0.0013938	573.3669789658142	65.18	0.51222	65.18	64.955	65.467	0					17	12	2	0	0	0	0.026007	1	6001	6001		18.262	1.5447	1	181540			36448	8671	30038	30063	39831	39831					0.15540911993343798
LVFLDIHNI	9	Unmodified	_LVFLDIHNI_					0	0	0		nc|ENSG00000087053|Q13614-2|MTMR2;ENSG00000087053|ENST00000346299|MTMR2	nc|ENSG00000087053|Q13614-2|MTMR2	nc|ENSG00000087053|Q13614-2|MTMR2	MULTI-MSMS	OvCa99_classI_Rep5	1	542.3150634765625	2	542.313492	1082.61243	2.0131	0.0010917	-0.19604	-0.00010631	1.817	0.0009854	542.3129481478396	112.84	0.72273	112.84	112.61	113.33	0					31	15	3	0	0	0	0.21395	1	12854	12854		73.975	5.1879	1	899280			36449	1759	30039	30064	39832	39832					0.07442906374035374
LVFLDIHNI	9	Unmodified	_LVFLDIHNI_					0	0	0		nc|ENSG00000087053|Q13614-2|MTMR2;ENSG00000087053|ENST00000346299|MTMR2	nc|ENSG00000087053|Q13614-2|MTMR2	nc|ENSG00000087053|Q13614-2|MTMR2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.313492	1082.61243	-0.080223	-4.3506E-05	-0.21502	-0.00011661	-0.29524	-0.00016011	542.3131819732256	113.26	1.8265	113.14	112.82	114.65	-0.12174	0.091206	0.00030752	NaN	73.975	68	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96906			36450	1759	30039	30064							0.07442906374035374
LVFLLVRKY	9	Unmodified	_LVFLLVRKY_					0	0	0		tr|A0A553SFT3|A0A553SFT3_NIACITVP38/TMEM64familymembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_09420PE=3SV=1	tr|A0A553SFT3|A0A553SFT3_NIACITVP38/TMEM64familymembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_09420PE=3SV=1	tr|A0A553SFT3|A0A553SFT3_NIACITVP38/TMEM64familymembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_09420PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.851806640625	2	575.870977	1149.7274	-1.1552	-0.00066526	-3.2749	-0.0018859	-4.4301	-0.0025512	575.8695676894205	89.393	0.30183	87.262	87.189	87.491	-2.1309					9	5	2	0	0	0	0.027462	1	5497	5497		31.955	3.8734	1	12785			36451	33074	30040	30065	39833	39833					0.15852635575856766
LVFLLVRKY	9	Unmodified	_LVFLLVRKY_					0	0	0		tr|A0A553SFT3|A0A553SFT3_NIACITVP38/TMEM64familymembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_09420PE=3SV=1	tr|A0A553SFT3|A0A553SFT3_NIACITVP38/TMEM64familymembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_09420PE=3SV=1	tr|A0A553SFT3|A0A553SFT3_NIACITVP38/TMEM64familymembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_09420PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.8521728515625	2	575.870977	1149.7274	0.059505	3.4267E-05	1.7334	0.00099822	1.7929	0.0010325	575.8723177098091	89.501	0.59251	86.926	86.656	87.248	-2.575					17	11	2	0	0	0	0.027462	1	7680	7680		26.796	11.931	1	22911			36452	33074	30040	30065	39834	39834					0.15852635575856766
LVFLVLALI	9	Unmodified	_LVFLVLALI_					0	0	0		tr|A0A553SIE7|A0A553SIE7_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_14715PE=4SV=1	tr|A0A553SIE7|A0A553SIE7_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_14715PE=4SV=1	tr|A0A553SIE7|A0A553SIE7_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_14715PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.8289489746094	2	500.843897	999.67324	-0.58141	-0.00029119	-4.138	-0.0020725	-4.7194	-0.0023637	500.84152981421045	74.182	0.29773	71.695	71.471	71.769	-2.4873					8	5	2	0	0	0	0.027462	1	3644	3644		39.021	0	1	15482			36453	33374	30041	30066	39835	39835					0.1733904342426058
LVFMPYKF	8	Unmodified	_LVFMPYKF_					0	0	0			REV__tr|A0A553SPW6|A0A553SPW6_NIACILincomycineffluxMFStransporterLmr(B)OS=NialliacirculansOX=1397GN=lmr(B)PE=4SV=1	REV__tr|A0A553SPW6|A0A553SPW6_NIACILincomycineffluxMFStransporterLmr(B)OS=NialliacirculansOX=1397GN=lmr(B)PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	522.8070678710938	2	522.782982	1043.55141	-1.5419	-0.00080606	-0.13649	-7.1357E-05	-1.6784	-0.00087742	522.7828726448089	92.963	1.5936	91.001	90.698	92.292	-1.9617					67	31	3	0	0	0	0.028476	1	6074	6074		39.021	12.329	1	998590	+		36454	30580	30042	30067	39836	39836					0.03137678070243055
LVFMPYKF	8	Unmodified	_LVFMPYKF_					0	0	0			REV__tr|A0A553SPW6|A0A553SPW6_NIACILincomycineffluxMFStransporterLmr(B)OS=NialliacirculansOX=1397GN=lmr(B)PE=4SV=1	REV__tr|A0A553SPW6|A0A553SPW6_NIACILincomycineffluxMFStransporterLmr(B)OS=NialliacirculansOX=1397GN=lmr(B)PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	522.782982	1043.55141	0.86864	0.00045411	-2.1104	-0.0011033	-1.2418	-0.00064919	522.7817700980028	92.261	1.2417	91.081	90.75	91.991	-1.1802	0.10228	-0.0012462	NaN	29.842	73	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	533680	+		36455	30580	30042	30067							0.03137678070243055
LVFMPYKF	8	Unmodified	_LVFMPYKF_					0	0	0			REV__tr|A0A553SPW6|A0A553SPW6_NIACILincomycineffluxMFStransporterLmr(B)OS=NialliacirculansOX=1397GN=lmr(B)PE=4SV=1	REV__tr|A0A553SPW6|A0A553SPW6_NIACILincomycineffluxMFStransporterLmr(B)OS=NialliacirculansOX=1397GN=lmr(B)PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	522.782982	1043.55141	-1.0363	-0.00054175	-0.67392	-0.00035231	-1.7102	-0.00089406	522.782524424535	93.496	1.2073	90.989	90.714	91.921	-2.5072	0.010252	0.00025582	NaN	29.842	64	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	915720	+		36456	30580	30042	30067							0.03137678070243055
LVFRITTT	8	Unmodified	_LVFRITTT_					0	0	0		ENST00000371317.9_1_X:119737922-119739264:+|nuORF	ENST00000371317.9_1_X:119737922-119739264:+|nuORF	ENST00000371317.9_1_X:119737922-119739264:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	475.7865905761719	2	475.78711	949.559667	-1.1235	-0.00053453	1.082	0.00051482	-0.041421	-1.9707E-05	475.7874263780674	139.39	1.0332	139.16	138.81	139.84	-0.22696					43	20	3	0	0	0	0.68714	1	13918	13918		45.952	7.1458	1	86387			36457	10951	30043	30068	39837	39837					0.08286948311206288
LVFRITTT	8	Unmodified	_LVFRITTT_					0	0	0		ENST00000371317.9_1_X:119737922-119739264:+|nuORF	ENST00000371317.9_1_X:119737922-119739264:+|nuORF	ENST00000371317.9_1_X:119737922-119739264:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	475.786865234375	2	475.78711	949.559667	-1.1284	-0.0005369	1.2052	0.00057342	0.07677	3.6526E-05	475.7874490810867	140.15	0.93607	139.11	138.74	139.68	-1.0339					36	18	3	0	0	0	0.74229	1	11540	11540		30.504	5.0535	1	94016			36458	10951	30043	30068	39838	39838					0.08286948311206288
LVFRITTT	8	Unmodified	_LVFRITTT_					0	0	0		ENST00000371317.9_1_X:119737922-119739264:+|nuORF	ENST00000371317.9_1_X:119737922-119739264:+|nuORF	ENST00000371317.9_1_X:119737922-119739264:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.7877502441406	2	475.78711	949.559667	1.3095	0.00062303	-1.3805	-0.00065681	-0.070994	-3.3778E-05	475.78620886305947	140.59	1.0255	139.1	138.76	139.78	-1.4952					37	19	3	0	0	0	0.75241	1	13724	13724		25.45	1.2474	1	84644			36459	10951	30043	30068	39839	39839					0.08286948311206288
LVFRVDSL	8	Unmodified	_LVFRVDSL_					0	0	0			REV__ENSG00000064726|ENST00000261721|BTBD1	REV__ENSG00000064726|ENST00000261721|BTBD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	474.26611328125	2	474.779285	947.544017	-0.78026	-0.00037045	-0.039004	-1.8518E-05	-0.81926	-0.00038897	474.77882076790667	72.688	0.48479	69.292	69.058	69.543	-3.3961					15	9	2	0	0	0	0.028476	1	5584	5584		38.806	0	1	41126	+		36460	16776	30044	30069	39840	39840					0.06814661794192034
LVFRYVNRGA	10	Unmodified	_LVFRYVNRGA_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5;LAMA5-GRB7|1|fusion;LAMA5-C20orf151|1|fusion	ENSG00000130702|ENST00000252999|LAMA5;LAMA5-C20orf151|1|fusion	LAMA5-C20orf151|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	598.3167724609375	2	597.840739	1193.66693	1.3474	0.00080555	-3.9676	-0.002372	-2.6201	-0.0015664	597.8384743871363	110.36	0.89425	108.76	108.33	109.23	-1.6011					34	16	3	0	0	0	0.026994	1	10125	10125		32.812	17.948	1	63563			36461	4000;14793	30045	30070	39841	39841					0.0778391824544542
LVFSRCHH	8	Unmodified	_LVFSRCHH_					0	0	0		PRAMEF1|p.L340Pfs*53|1|0.04|ENSG00000116721|chr1:12795587-12795588|-/G|frameshift_variant;ENSG00000279169|ENST00000625019|PRAMEF13;ENSG00000204481|ENST00000334600|PRAMEF14;ENSG00000120952|ENST00000240189|PRAMEF2;ENSG00000116721|ENST00000332296|PRAMEF1	PRAMEF1|p.L340Pfs*53|1|0.04|ENSG00000116721|chr1:12795587-12795588|-/G|frameshift_variant	PRAMEF1|p.L340Pfs*53|1|0.04|ENSG00000116721|chr1:12795587-12795588|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.76513671875	2	499.753079	997.491604	0.79155	0.00039558	-3.964	-0.001981	-3.1724	-0.0015854	499.750907659982	127.58	0.52036	126.49	126.3	126.83	-1.0933					11	9	2	0	0	0	0.028476	1	10042	10042		50.025	7.6284	1	21624			36462	3202	30046	30071	39842	39842					-0.007241998204222
LVFTMVYTV	9	Unmodified	_LVFTMVYTV_					0	0	0		ENSG00000120457|ENST00000529694|KCNJ5	ENSG00000120457|ENST00000529694|KCNJ5	ENSG00000120457|ENST00000529694|KCNJ5	MULTI-SECPEP	OvCa9_classI_Rep3	3	535.8330688476562	2	536.791004	1071.56745	0.81927	0.00043978	-3.1477	-0.0016896	-2.3284	-0.0012499	536.7886414004017	118.19	0.79317	117.16	116.89	117.68	-1.0324					31	15	3	0	0	0	0.027462	1	8874	8874		3.41	0	1	31487			36463	3432	30047	30072	39843	39843					0.03453339516477172
LVFTMVYTV	9	Unmodified	_LVFTMVYTV_					0	0	0		ENSG00000120457|ENST00000529694|KCNJ5	ENSG00000120457|ENST00000529694|KCNJ5	ENSG00000120457|ENST00000529694|KCNJ5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	536.791004	1071.56745	-1.9901	-0.0010683	-0.34731	-0.00018643	-2.3374	-0.0012547	537.2928478173825	117.38	0.59467	117.26	117.06	117.66	-0.12868	0.094174	0.001	NaN	6.7355	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11430			36464	3432	30047	30072							0.03453339516477172
LVFVFHVLL	9	Unmodified	_LVFVFHVLL_					0	0	0		ENST00000586115.5_1_19:37080585-37096048:-|nuORF	ENST00000586115.5_1_19:37080585-37096048:-|nuORF	ENST00000586115.5_1_19:37080585-37096048:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.33154296875	2	543.839146	1085.66374	1.878	0.0010213	-1.2292	-0.00066849	0.64878	0.00035283	543.8381623754499	117.5	0.47202	117.5	117.32	117.79	0					16	9	2	0	0	0	0.027462	1	13495	13495		29.842	7.8817	1	207180			36465	14043	30048	30073	39844	39844					0.12433275138755562
LVFVGDTL	8	Unmodified	_LVFVGDTL_					0	0	0		nc|ENSG00000100842|O43281-3|EFS;nc|ENSG00000100842|O43281-2|EFS;ENSG00000100842|ENST00000216733|EFS	nc|ENSG00000100842|O43281-3|EFS	nc|ENSG00000100842|O43281-3|EFS	MULTI-SECPEP	OvCa99_classI_Rep5	1	432.7250061035156	2	432.247286	862.48002	2.1582	0.00093286	1.7348	0.00074988	3.893	0.0016827	432.2472991731525	113.76	0.3488	113.76	113.57	113.92	0					16	7	3	0	0	0	0.028476	1	12960	12960		44.531	0	1	170520			36466	2111	30049	30074	39845	39845					0.04327881637232167
LVFVHLPIL	9	Unmodified	_LVFVHLPIL_					0	0	0			REV__ENST00000436236.1_1_3:31638325-31661336:+|nuORF	REV__ENST00000436236.1_1_3:31638325-31661336:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.8563842773438	2	525.839146	1049.66374	1.3319	0.00070036	-3.1168	-0.0016389	-1.7849	-0.00093856	525.8366889386336	127.1	0.31464	127.1	126.87	127.18	0					9	6	2	0	0	0	0.02744	1	14683	14683		49.211	20.957	1	36462	+		36467	20847	30050	30075	39846	39846					0.1408927513875824
LVFVSDQFDL	10	Unmodified	_LVFVSDQFDL_					0	0	0			REV__ENST00000469896.1_1_3:149468461-149470237:-|nuORF	REV__ENST00000469896.1_1_3:149468461-149470237:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	591.3199462890625	2	591.805697	1181.59684	-0.75643	-0.00044766	-2.3172	-0.0013713	-3.0736	-0.001819	591.8047185370704	105.57	0.49898	105.14	104.95	105.45	-0.43642					14	9	2	0	0	0	0.026714	1	9841	9841		42.864	2.0861	1	15123	+		36468	18200	30051	30076	39847	39847					0.013305750663448634
LVFWRRRQWLR	11	Unmodified	_LVFWRRRQWLR_					0	0	0		ENST00000595444.1_2_19:17403433-17403508:+|nuORF	ENST00000595444.1_2_19:17403433-17403508:+|nuORF	ENST00000595444.1_2_19:17403433-17403508:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	539.6524047851562	3	539.319666	1614.93717	0.22695	0.0001224	-3.9701	-0.0021412	-3.7432	-0.0020188	539.3174727877653	37.042	1.3457	34.15	33.595	34.941	-2.8925					78	26	4	0	0	0	0.72548	1	1343	1343		9.2118	7.6888	1	129070			36469	14175	30052	30077	39848	39848					0.15429691301528692
LVFWRRRQWLR	11	Unmodified	_LVFWRRRQWLR_					0	0	0		ENST00000595444.1_2_19:17403433-17403508:+|nuORF	ENST00000595444.1_2_19:17403433-17403508:+|nuORF	ENST00000595444.1_2_19:17403433-17403508:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	539.319666	1614.93717	-3.3261	-0.0017939	-0.11269	-6.0778E-05	-3.4388	-0.0018546	539.3195594182738	36.831	0.7885	34.122	33.795	34.583	-2.7097	-0.01401	0.0050369	NaN	9.2118	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29809			36470	14175	30052	30077							0.15429691301528692
LVGATRQILV	10	Unmodified	_LVGATRQILV_					0	0	0			REV__ENST00000568924.1_1_16:89367231-89379861:-|nuORF	REV__ENST00000568924.1_1_16:89367231-89379861:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	535.3391723632812	2	535.340041	1068.66553	-1.5363	-0.00082246	1.039	0.00055624	-0.49729	-0.00026622	535.3405413095446	47.805	1.5411	45.095	44.588	46.129	-2.7097					85	30	4	0	0	0	0.62299	1	2926	2926		39.253	2.8061	1	476770	+		36471	27720	30053	30078	39849	39849					0.13394284156697722
LVGCQPIAIN	10	Unmodified	_LVGCQPIAIN_					0	0	0			REV__ENSG00000205832|ENST00000444310|C16orf96	REV__ENSG00000205832|ENST00000444310|C16orf96	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.3076782226562	2	514.283877	1026.5532	0.79456	0.00040863	2.6016	0.001338	3.3962	0.0017466	514.2865174968365	124.25	0.82848	124.25	124.01	124.84	0					30	17	3	0	0	0	0.026871	1	14343	14343		29.15	0	1	130160	+		36472	23229	30054	30079	39850	39850					0.040986870881852155
LVGDLLTIAR	10	Unmodified	_LVGDLLTIAR_					0	0	0		tr|A0A553SUS9|A0A553SUS9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_06750PE=4SV=1	tr|A0A553SUS9|A0A553SUS9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_06750PE=4SV=1	tr|A0A553SUS9|A0A553SUS9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_06750PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3170166015625	2	535.832049	1069.64954	-0.84261	-0.0004515	-2.8678	-0.0015366	-3.7104	-0.0019881	535.8308926362371	36.514	0.94644	36.514	35.984	36.931	0					33	20	3	0	0	0	0.026994	1	1897	1897		25.574	0	1	258650			36473	34636	30055	30080	39851	39851					0.11750577919792704
LVGDRDVG	8	Unmodified	_LVGDRDVG_					0	0	0		ENSG00000102128|ENST00000218249|RAB40AL;ENSG00000172476|ENST00000304236|RAB40A	ENSG00000102128|ENST00000218249|RAB40AL	ENSG00000102128|ENST00000218249|RAB40AL	MULTI-MSMS	OvCa9_classI_Rep2	2	415.7213134765625	2	415.721967	829.429381	-1.0163	-0.00042249	0.92585	0.0003849	-0.090424	-3.7591E-05	415.72221629127785	119.3	1.3301	119.13	118.81	120.14	-0.17138					54	26	3	0	0	0	0.74971	1	11501	11501		26.796	0	1	206540			36474	2223	30056	30081	39852	39852					0.007843523122346596
LVGEWGRQL	9	Unmodified	_LVGEWGRQL_					0	0	0			REV__ENST00000300952.6_1_19:1258292-1258616:+|nuORF	REV__ENST00000300952.6_1_19:1258292-1258616:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2769165039062	2	529.293091	1056.57163	-0.577	-0.0003054	-0.042819	-2.2664E-05	-0.61982	-0.00032807	529.2930516799688	61.357	0.8408	61.357	61.071	61.912	0					30	19	3	0	0	0	0.027462	1	5428	5428		25.45	0	1	964920	+		36475	24239	30057	30082	39853	39853					0.04560565054430299
LVGGEVVYY	9	Unmodified	_LVGGEVVYY_					0	0	0			REV__nc|ENSG00000180667|Q5VVQ6-2|YOD1	REV__nc|ENSG00000180667|Q5VVQ6-2|YOD1	MULTI-MSMS	OvCa9_classI_Rep3	3	499.7644958496094	2	499.7633	997.512048	0.8461	0.00042285	2.5175	0.0012581	3.3636	0.001681	499.7649286167221	127.27	5.5139	126.2	124.35	129.86	-1.0715					229	108	5	0	0	0	0.30002	2	9944	9944;10106		62.978	5.9937	1	11725000	+		36476	22185	30058	30083	39854;39855	39854					0.01319249320374638
LVGGKHPC	8	Unmodified	_LVGGKHPC_					0	0	0			REV__tr|A0A553STH1|A0A553STH1_NIACINitritereductasesmallsubunitNirDOS=NialliacirculansOX=1397GN=nirDPE=4SV=1	REV__tr|A0A553STH1|A0A553STH1_NIACINitritereductasesmallsubunitNirDOS=NialliacirculansOX=1397GN=nirDPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	405.7186279296875	2	405.718173	809.421793	1.9299	0.00078299	-0.41137	-0.0001669	1.5185	0.00061609	405.71788630934805	120.02	2.0709	118.99	118.68	120.75	-1.0271					79	40	4	0	0	0	0.75991	1	9154	9154		21.702	0	1	570100	+		36477	30961	30059	30084	39856	39856					0.009459215109586694
LVGGLEYSVE	10	Unmodified	_LVGGLEYSVE_					0	0	0			REV__tr|A0A553SQX0|A0A553SQX0_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_07430PE=4SV=1	REV__tr|A0A553SQX0|A0A553SQX0_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_07430PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	533.2776489257812	2	533.276772	1064.53899	0.18643	9.9418E-05	4.0382	0.0021535	4.2247	0.0022529	533.2785559921388	128.55	1.1387	128.32	127.98	129.12	-0.22697					45	22	3	0	0	0	0.72319	1	12588	12588		27.882	0	1	58093	+		36478	30669	30060	30085	39857	39857					0.009303131409069465
LVGIVPILNRG	11	Unmodified	_LVGIVPILNRG_					0	0	0			REV__ENST00000399070.3_2_18:32886088-32886400:+|nuORF	REV__ENST00000399070.3_2_18:32886088-32886400:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	575.8514404296875	2	575.868966	1149.72338	0.91245	0.00052545	2.8085	0.0016173	3.7209	0.0021428	575.8707526654347	87.743	0.83379	86.312	86.139	86.973	-1.4311					26	16	4	0	0	0	0.025853	1	7649	7649		35.618	3.6634	1	130500	+		36479	25387	30061	30086	39858	39858					0.1545054608211558
LVGKGKCF	8	Unmodified	_LVGKGKCF_					0	0	0		ENST00000310421.4_1_8:67579243-67579318:-|nuORF	ENST00000310421.4_1_8:67579243-67579318:-|nuORF	ENST00000310421.4_1_8:67579243-67579318:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	426.24688720703125	2	426.244024	850.473494	1.5061	0.00064196	3.0836	0.0013144	4.5897	0.0019563	426.24523618232024	139.52	1.3271	138.02	137.63	138.95	-1.4952					53	25	3	0	0	0	0.74971	1	13586	13586		26.796	2.5934	1	256270			36480	10286	30062	30087	39859	39859					0.04227665204859932
LVGKGRDISL	10	Unmodified	_LVGKGRDISL_					0	0	0		ENSG00000151065|ENST00000280665|DCP1B;ENST00000541700.5_1_12:2062443-2113597:-|nuORF;ENST00000537725.1_1_12:2070525-2113588:-|nuORF	ENSG00000151065|ENST00000280665|DCP1B	ENSG00000151065|ENST00000280665|DCP1B	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.3238525390625	2	529.321848	1056.62914	1.5855	0.00083925	1.4634	0.00077459	3.0489	0.0016138	529.3226028011923	136.4	1.1682	134.86	134.6	135.76	-1.5437					62	23	4	0	0	0	0.53885	1	13235	13235		49.442	0	1	101290			36481	5531	30063	30088	39860	39860					0.10309407260001535
LVGKKCVL	8	Unmodified	_LVGKKCVL_					0	0	0			REV__HEPHL1|p.A683Gfs*12|1|0.45|ENSG00000181333|chr11:94086157-94086164|CCACAACA/-|frameshift_variant	REV__HEPHL1|p.A683Gfs*12|1|0.45|ENSG00000181333|chr11:94086157-94086164|CCACAACA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	430.2730712890625	2	430.275324	858.536095	0.52903	0.00022763	-4.3637	-0.0018776	-3.8347	-0.00165	430.27333471569034	108.54	1.6558	107.34	106.9	108.56	-1.1978					82	31	3	0	0	0	0.69415	1	7736	7736		44.531	0.90502	1	490810	+		36482	22228	30064	30089	39861	39861					0.10116811273064741
LVGKWHRA	8	Unmodified	_LVGKWHRA_					0	0	0		ENST00000493876.2_1_2:114386183-114391835:+|nuORF	ENST00000493876.2_1_2:114386183-114391835:+|nuORF	ENST00000493876.2_1_2:114386183-114391835:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	484.31866455078125	2	483.785236	965.555919	-0.25737	-0.00012451	-1.7798	-0.00086104	-2.0372	-0.00098555	483.78440020648276	114.74	0.39454	114.62	114.35	114.75	-0.11777					11	7	2	0	0	0	0.028476	1	10902	10902		35.201	1.6851	1	11487			36483	12744	30065	30090	39862	39862					0.07176323328030776
LVGKYVVLV	9	Unmodified	_LVGKYVVLV_					0	0	0		tr|A0A7D7A324|A0A7D7A324_9CLOTMethionine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=metGPE=3SV=1	tr|A0A7D7A324|A0A7D7A324_9CLOTMethionine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=metGPE=3SV=1	tr|A0A7D7A324|A0A7D7A324_9CLOTMethionine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=metGPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.324462890625	2	495.323328	988.632104	-0.52688	-0.00026097	0.32729	0.00016211	-0.19959	-9.8859E-05	495.3233286333838	106.07	1.8591	104.06	103.7	105.55	-2.0161					100	35	4	0	0	0	0.25214	1	9636	9636		68.485	2.6815	1	565860			36484	36101	30066	30091	39863	39863					0.13733282384805534
LVGLARPLVL	10	Unmodified	_LVGLARPLVL_					0	0	0		ENSG00000113583|ENST00000231512|C5orf15;ENST00000509913.1_1_5:133295698-133304275:-|nuORF	ENSG00000113583|ENST00000231512|C5orf15	ENSG00000113583|ENST00000231512|C5orf15	MULTI-MSMS	OvCa99_classI_Rep5	1	525.8565673828125	2	525.855327	1049.6961	1.3326	0.00070078	0.55249	0.00029053	1.8851	0.0009913	525.8555111735291	127.1	1.4503	127.1	126.69	128.14	0					83	31	4	0	0	0	0.56767	1	14729	14729		45.952	0	1	4632300			36485	2978	30067	30092	39864	39864					0.17324062541752028
LVGLARPLVL	10	Unmodified	_LVGLARPLVL_					0	0	0		ENSG00000113583|ENST00000231512|C5orf15;ENST00000509913.1_1_5:133295698-133304275:-|nuORF	ENSG00000113583|ENST00000231512|C5orf15	ENSG00000113583|ENST00000231512|C5orf15	MULTI-MSMS	OvCa9_classI_Rep3	3	525.8549194335938	2	525.855327	1049.6961	0.33138	0.00017426	-0.66182	-0.00034802	-0.33044	-0.00017376	525.85482904703	128.29	1.7807	127.2	126.73	128.51	-1.0933					95	35	4	0	0	0	0.56767	2	10079	10079;10111		45.952	10.334	1	248690			36486	2978	30067	30092	39865;39866	39865					0.17324062541752028
LVGLARPLVL	10	Unmodified	_LVGLARPLVL_					0	0	0		ENSG00000113583|ENST00000231512|C5orf15;ENST00000509913.1_1_5:133295698-133304275:-|nuORF	ENSG00000113583|ENST00000231512|C5orf15	ENSG00000113583|ENST00000231512|C5orf15	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.8547973632812	2	525.855327	1049.6961	-0.17376	-9.1372E-05	-0.049096	-2.5818E-05	-0.22285	-0.00011719	525.8551418394103	128.56	1.8468	127.1	126.69	128.53	-1.4565					98	36	4	0	0	0	0.71192	2	12280	12280;12330		29.15	4.6304	1	322380			36487	2978	30067	30092	39867;39868	39867					0.17324062541752028
LVGLENLESIS	11	Unmodified	_LVGLENLESIS_					0	0	0		LRRN3|p.V577Yfs*7|1|0.12|ENSG00000173114|chr7:111124500-111124500|G/-|frameshift_variant;ENSG00000173114|ENST00000308478|LRRN3	LRRN3|p.V577Yfs*7|1|0.12|ENSG00000173114|chr7:111124500-111124500|G/-|frameshift_variant	LRRN3|p.V577Yfs*7|1|0.12|ENSG00000173114|chr7:111124500-111124500|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	587.3196411132812	2	587.321711	1172.62887	0.74905	0.00043993	-3.4241	-0.0020111	-2.6751	-0.0015711	587.3195769600642	29.847	0.78018	27.137	26.975	27.755	-2.7097					33	15	3	0	0	0	0.68757	1	754	754		33.922	3.6039	1	104770			36488	7349	30068	30093	39869	39869					0.049459427494639385
LVGLLLGGGAF	11	Unmodified	_LVGLLLGGGAF_					0	0	0		chrX:118419411-118432781|190|10.3|0.42|4.6|+|1|TE_info:L1PB1,L1PB1_dup8380,L1,LINE,donor,-,118415804,118419411|None,WDR44|54	chrX:118419411-118432781|190|10.3|0.42|4.6|+|1|TE_info:L1PB1,L1PB1_dup8380,L1,LINE,donor,-,118415804,118419411|None,WDR44|54	chrX:118419411-118432781|190|10.3|0.42|4.6|+|1|TE_info:L1PB1,L1PB1_dup8380,L1,LINE,donor,-,118415804,118419411|None,WDR44|54	MULTI-MSMS	OvCa99_classI_Rep5	1	508.81268310546875	2	508.810585	1015.60662	2.476	0.0012598	0.15381	7.8262E-05	2.6299	0.0013381	508.8104441193225	106.38	0.61996	106.38	106.14	106.76	0					37	13	4	0	0	0	0.41157	1	11989	11989		60.294	0.17569	1	2328700			36489	564	30069	30094	39870	39870					0.09943807862373433
LVGLVGFC	8	Unmodified	_LVGLVGFC_					0	0	0			REV__nc|ENSG00000017483|Q8WUX1-2|SLC38A5	REV__nc|ENSG00000017483|Q8WUX1-2|SLC38A5	MULTI-MSMS	OvCa99_classI_Rep5	1	404.22833251953125	2	404.2253	806.436046	1.4641	0.00059183	3.0152	0.0012188	4.4794	0.0018107	404.2264815764348	62.641	2.0819	62.641	62.335	64.417	0					111	51	5	0	0	0	0.46547	2	5573	5573;5604		80.997	13.67	1	26968000	+		36490	16528	30070	30095	39871;39872	39871					0.025085739392579853
LVGLVLLVILV	11	Unmodified	_LVGLVLLVILV_					0	0	0		ENSG00000198569|ENST00000673835|SLC34A3	ENSG00000198569|ENST00000673835|SLC34A3	ENSG00000198569|ENST00000673835|SLC34A3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.8524169921875	2	575.91231	1149.81007	-0.85576	-0.00049284	-1.2278	-0.00070712	-2.0836	-0.0012	576.412407342345	89.156	0.1939	86.553	86.434	86.628	-2.6027					6	3	2	0	0	0	0.026108	1	7622	7622		11.511	0	1	9106.4			36491	8829	30071	30096	39873	39873					0.24115532583982713
LVGNKVDLEP	10	Unmodified	_LVGNKVDLEP_					0	0	0		ENSG00000123728|ENST00000370874|RAP2C	ENSG00000123728|ENST00000370874|RAP2C	ENSG00000123728|ENST00000370874|RAP2C	MULTI-MSMS	OvCa99_classI_Rep5	1	542.307861328125	2	542.305864	1082.59717	1.8794	0.0010192	0.96349	0.00052251	2.8429	0.0015417	542.3056808881333	110.28	1.3412	110.28	109.73	111.07	0					127	29	7	0	0	0	0.26627	1	12526	12526		84.916	5.2029	1	2809000			36492	3611	30072	30097	39874	39874					0.05917994786182135
LVGPGGGG	8	Unmodified	_LVGPGGGG_					0	0	0			REV__ENST00000610088.5_1_X:62780834-62780912:-|nuORF	REV__ENST00000610088.5_1_X:62780834-62780912:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	613.81494140625	1	613.330402	612.323125	2.0286	0.0012442	2.9092	0.0017843	4.9378	0.0030285	613.3320519635283	122.32	1.6145	122.32	122.04	123.65	0					59	34	3	0	0	0	0.028476	1	14198	14198		33.493	16.788	1	4075900	+		36493	28105	30073	30098	39875	39875					0.0014564153757419263
LVGPGGGG	8	Unmodified	_LVGPGGGG_					0	0	0			REV__ENST00000610088.5_1_X:62780834-62780912:-|nuORF	REV__ENST00000610088.5_1_X:62780834-62780912:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		1	613.330402	612.323125	-0.67042	-0.00041119	3.1056	0.0019047	2.4352	0.0014936	613.3322708296575	122.84	0.84	122.62	122.22	123.06	-0.21803	0.14788	0.00054474	NaN	33.493	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23676	+		36494	28105	30073	30098							0.0014564153757419263
LVGPGGGG	8	Unmodified	_LVGPGGGG_					0	0	0			REV__ENST00000610088.5_1_X:62780834-62780912:-|nuORF	REV__ENST00000610088.5_1_X:62780834-62780912:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		1	613.330402	612.323125	2.7624	0.0016943	-0.39092	-0.00023976	2.3715	0.0014545	613.3301041533382	123.46	1.0328	122.42	122.1	123.13	-1.0377	-0.059488	-0.0015998	NaN	33.493	25	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49386	+		36495	28105	30073	30098							0.0014564153757419263
LVGPGGGG	8	Unmodified	_LVGPGGGG_					0	0	0			REV__ENST00000610088.5_1_X:62780834-62780912:-|nuORF	REV__ENST00000610088.5_1_X:62780834-62780912:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		1	613.330402	612.323125	-0.25135	-0.00015416	2.5693	0.0015758	2.318	0.0014217	613.331755024649	123.94	1.0538	122.55	122.13	123.18	-1.3908	0.068723	0.00021584	NaN	33.493	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42059	+		36496	28105	30073	30098							0.0014564153757419263
LVGPRDSNFAI	11	Unmodified	_LVGPRDSNFAI_					0	0	0			REV__ENST00000571227.5_1_16:4438053-4465766:-|nuORF	REV__ENST00000571227.5_1_16:4438053-4465766:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	594.8228149414062	2	594.822212	1187.62987	0.54249	0.00032269	-1.6919	-0.0010064	-1.1494	-0.00068372	594.821180381397	86.951	2.3021	84.324	83.86	86.162	-2.6269					107	45	4	0	0	0	0.5466	1	7354	7354		49.536	1.8787	1	1537900	+		36497	23572	30074	30099	39876	39876					0.04356201909035917
LVGQHILSV	9	Unmodified	_LVGQHILSV_					0	0	0		CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant;ENSG00000084774|ENST00000264705|CAD	CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	483.2914733886719	2	483.292559	964.570566	1.622	0.0007839	-1.7283	-0.0008353	-0.10634	-5.1394E-05	483.2916328469593	89.615	1.9416	88.313	87.84	89.781	-1.302					88	38	3	0	0	0	0.36502	1	7920	7920		55.504	2.5675	1	716900			36498	176	30075	30100	39877	39877					0.08686350685525213
LVGQLIYAIAL	11	Unmodified	_LVGQLIYAIAL_					0	0	0			REV__ENST00000581505.6_2_17:61784845-61790870:-|nuORF	REV__ENST00000581505.6_2_17:61784845-61790870:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.8101806640625	2	587.365724	1172.7169	1.0645	0.00062525	-0.39275	-0.00023069	0.67175	0.00039456	587.8671861053082	123.56	0.36594	123.56	123.37	123.74	0					11	7	2	0	0	0	0.025909	1	14227	14227		26.693	0	1	43992	+		36499	23587	30076	30101	39878	39878					0.1374460813076439
LVGQWVRAEAE	11	Unmodified	_LVGQWVRAEAE_					0	0	0		L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|2|1|sense	L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|2|1|sense	L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|2|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.1872863769531	3	419.891055	1256.65134	-0.076416	-3.2086E-05	3.0263	0.0012707	2.9499	0.0012386	420.22620372040046	29.439	0.49827	29.439	29.237	29.735	0					17	9	3	0	0	0	0.025767	1	1038	1038		24.232	0	1	20200			36500	14741	30077	30102	39879	39879					0.03327586937780325
LVGRPTLPE	9	Unmodified	_LVGRPTLPE_					0	0	0			REV__nc|ENSG00000063176|Q9NRA0-4|SPHK2	REV__nc|ENSG00000063176|Q9NRA0-4|SPHK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.2171630859375	2	491.290017	980.565481	-0.92562	-0.00045475	1.6937	0.00083209	0.76807	0.00037734	491.2903715698192	42.239	0.30423	42.239	41.982	42.286	0					12	6	3	0	0	0	0.027433	1	2700	2700		45.972	11.8	1	52587	+		36501	16759	30078	30103	39880	39880					0.07442046822905013
LVGRPVAL	8	Unmodified	_LVGRPVAL_					0	0	0			REV__ENSG00000171763|ENST00000305560|SPATA5L1	REV__ENSG00000171763|ENST00000305560|SPATA5L1	MULTI-MSMS	OvCa9_classI_Rep4_	4	412.77215576171875	2	412.771263	823.527973	0.061376	2.5334E-05	0.66446	0.00027427	0.72584	0.00029961	412.7713807300369	93.938	1.2597	91.431	91.212	92.472	-2.5072					53	25	3	0	0	0	0.69415	1	8243	8243		44.531	7.5026	1	408510	+		36502	21642	30079	30104	39881	39881					0.1091500034793853
LVGRRWLF	8	Unmodified	_LVGRRWLF_					0	0	0			REV__ENST00000302516.9_1_16:70607775-70608060:+|nuORF	REV__ENST00000302516.9_1_16:70607775-70608060:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.7612915039062	2	523.816536	1045.61852	-0.51234	-0.00026837	-2.8159	-0.001475	-3.3283	-0.0017434	523.8149062642248	116.45	0.56145	115.08	114.89	115.46	-1.3645					14	10	2	0	0	0	0.028476	1	10890	10890		21.702	5.2292	1	14459	+		36503	24261	30080	30105	39882	39882					0.09753469396218861
LVGRRWLF	8	Unmodified	_LVGRRWLF_					0	0	0			REV__ENST00000302516.9_1_16:70607775-70608060:+|nuORF	REV__ENST00000302516.9_1_16:70607775-70608060:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	523.816536	1045.61852	-0.23086	-0.00012093	-2.092	-0.0010958	-2.3228	-0.0012167	523.8155708854493	115.24	0.4935	115.12	114.9	115.39	-0.11777	-0.032492	0.0002925	NaN	21.702	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19028	+		36504	24261	30080	30105							0.09753469396218861
LVGRRWLF	8	Unmodified	_LVGRRWLF_					0	0	0			REV__ENST00000302516.9_1_16:70607775-70608060:+|nuORF	REV__ENST00000302516.9_1_16:70607775-70608060:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	523.816536	1045.61852	-0.87078	-0.00045613	-2.3689	-0.0012409	-3.2397	-0.001697	523.815204145724	116.3	0.74077	115.25	114.95	115.69	-1.0414	0.10198	2.3467E-06	NaN	21.702	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16244	+		36505	24261	30080	30105							0.09753469396218861
LVGSEMFTF	9	Unmodified	_LVGSEMFTF_					0	0	0			REV__ENSG00000280021|ENST00000624103|OR51F1	REV__ENSG00000280021|ENST00000624103|OR51F1	MULTI-MSMS	OvCa9_classI_Rep3	3	515.7511596679688	2	515.749336	1029.48412	0.44781	0.00023096	4.1318	0.002131	4.5796	0.0023619	515.7513503783326	132.24	1.5304	131.12	130.79	132.32	-1.1249					72	30	3	0	0	0	0.44294	1	10600	10600		47.916	0.25827	1	308860	+		36506	23657	30081	30106	39883	39883					-0.029443969313661
LVGSSILLAK	10	Unmodified	_LVGSSILLAK_					0	0	0			REV__ENST00000523439.1_1_19:58003464-58005455:+|nuORF	REV__ENST00000523439.1_1_19:58003464-58005455:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.82537841796875	2	500.823692	999.632832	-0.70231	-0.00035174	1.3834	0.00069283	0.68106	0.00034109	500.82426175027206	62.48	3.824	59.023	58.382	62.206	-3.4577					194	78	4	0	0	0	0.66721	1	4311	4311		34.173	0	1	1001200	+		36507	17700	30082	30107	39884	39884					0.13300077033864
LVGSSSGAALH	11	Unmodified	_LVGSSSGAALH_					0	0	0		tr|A0A553SKK0|A0A553SKK0_NIACICysteinesynthasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_18760PE=4SV=1	tr|A0A553SKK0|A0A553SKK0_NIACICysteinesynthasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_18760PE=4SV=1	tr|A0A553SKK0|A0A553SKK0_NIACICysteinesynthasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_18760PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	499.7647705078125	2	499.766906	997.519259	0.42625	0.00021303	-4.146	-0.002072	-3.7197	-0.001859	499.76512722989173	126.31	4.05	126.07	125.5	129.55	-0.2359					192	81	3	0	0	0	0.50472	1	12418	12418		53.351	1.0523	1	11682000			36508	33624	30083	30108	39885	39885					0.020399819208023473
LVGSSSGAALH	11	Unmodified	_LVGSSSGAALH_					0	0	0		tr|A0A553SKK0|A0A553SKK0_NIACICysteinesynthasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_18760PE=4SV=1	tr|A0A553SKK0|A0A553SKK0_NIACICysteinesynthasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_18760PE=4SV=1	tr|A0A553SKK0|A0A553SKK0_NIACICysteinesynthasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_18760PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.7646179199219	2	499.766906	997.519259	-1.053	-0.00052626	-3.1163	-0.0015574	-4.1694	-0.0020837	499.76572667649543	127.6	4.5409	126.16	125.39	129.93	-1.4357					197	90	5	0	0	0	0.40225	1	12154	12154		60.972	3.1607	1	12586000			36509	33624	30083	30108	39886	39886					0.020399819208023473
LVGSYVMTL	9	Oxidation (M)	_LVGSYVM(Oxidation (M))TL_		LVGSYVM(1)TL		LVGSYVM(63)TL	0	0	1		sp|P09724|US20_HCMVATransmembraneproteinHWLF3OS=Humancytomegalovirus(strainAD169)OX=10360GN=US20PE=3SV=4;sp|F5HGH8|US20_HCMVMMembraneproteinUS20OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US20PE=4SV=1	sp|P09724|US20_HCMVATransmembraneproteinHWLF3OS=Humancytomegalovirus(strainAD169)OX=10360GN=US20PE=3SV=4	sp|P09724|US20_HCMVATransmembraneproteinHWLF3OS=Humancytomegalovirus(strainAD169)OX=10360GN=US20PE=3SV=4	MULTI-MSMS	OvCa9_classI_Rep3	3	499.7655944824219	2	499.764986	997.515419	0.8461	0.00042285	-0.85495	-0.00042727	-0.0088517	-4.4238E-06	499.7649286167221	127.27	5.5139	126.2	124.35	129.86	-1.0715					229	108	5	0	0	0	0.29717	1	10048	10048		63.306	6.5852	1	11725000			36510	32888	30084	30109	39887	39887		724			0.01656176102756035
LVGTEFFA	8	Unmodified	_LVGTEFFA_					0	0	0			REV__nc|ENSG00000177943|Q6UXC1|MAMDC4	REV__nc|ENSG00000177943|Q6UXC1|MAMDC4	MULTI-SECPEP	OvCa99_classI_Rep5	1	441.7690124511719	2	442.231636	882.448719	1.4391	0.00063643	3.1185	0.0013791	4.5576	0.0020155	442.2329176518027	67.29	0.54874	67.29	67.055	67.604	0					21	13	2	0	0	0	0.028476	1	6283	6283		20.482	0	1	846450	+		36511	29025	30085	30110	39888	39888					0.002793086031488201
LVGVKGLAQ	9	Unmodified	_LVGVKGLAQ_					0	0	0		ENST00000462829.2_1_12:132624288-132624495:-|nuORF	ENST00000462829.2_1_12:132624288-132624495:-|nuORF	ENST00000462829.2_1_12:132624288-132624495:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.7723388671875	2	442.781828	883.549102	0.54698	0.00024219	-1.3777	-0.00061004	-0.83076	-0.00036785	442.78046153440926	50.818	0.39819	50.818	50.551	50.949	0					18	8	3	0	0	0	0.027462	1	3889	3889		30.504	5.0535	1	495050			36512	12212	30086	30111	39889	39889					0.10266965656796856
LVGVWVKAL	9	Unmodified	_LVGVWVKAL_					0	0	0		ENSG00000156097|ENST00000527748|GPR61	ENSG00000156097|ENST00000527748|GPR61	ENSG00000156097|ENST00000527748|GPR61	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.7812805175781	2	492.81567	983.616788	-0.74508	-0.00036719	-3.6751	-0.0018111	-4.4202	-0.0021783	492.8137750816744	65.896	0.82671	62.41	62.227	63.054	-3.4854					26	16	2	0	0	0	0.027462	1	4761	4761		35.201	13.498	1	127840			36513	5819	30087	30112	39890	39890					0.12432415587613832
LVGVWVKAL	9	Unmodified	_LVGVWVKAL_					0	0	0		ENSG00000156097|ENST00000527748|GPR61	ENSG00000156097|ENST00000527748|GPR61	ENSG00000156097|ENST00000527748|GPR61	MULTI-MATCH	OvCa9_classI_Rep2	2		2	492.81567	983.616788	1.204	0.00059334	-5.5582	-0.0027392	-4.3543	-0.0021458	492.81291777330017	65.205	1.0196	62.48	62.023	63.043	-2.7245	0.034952	-0.00054236	NaN	35.201	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74589			36514	5819	30087	30112							0.12432415587613832
LVGYVEGDKII	11	Unmodified	_LVGYVEGDKII_					0	0	0			REV__tr|A0A7D6VSV6|A0A7D6VSV6_9CLOTGAFdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05520PE=3SV=1	REV__tr|A0A7D6VSV6|A0A7D6VSV6_9CLOTGAFdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05520PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	603.7778930664062	2	603.342446	1204.67034	0.51588	0.00031125	-0.82059	-0.0004951	-0.30471	-0.00018384	603.3419435523749	102.19	1.0512	99.99	99.676	100.73	-2.1994					33	19	3	0	0	0	0.025701	1	9209	9209		44.377	5.1244	1	42797	+		36515	31543	30088	30113	39891	39891					0.07619123508811754
LVGYVEGDKII	11	Unmodified	_LVGYVEGDKII_					0	0	0			REV__tr|A0A7D6VSV6|A0A7D6VSV6_9CLOTGAFdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05520PE=3SV=1	REV__tr|A0A7D6VSV6|A0A7D6VSV6_9CLOTGAFdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05520PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	603.342446	1204.67034	-1.4923	-0.00090035	1.2704	0.00076649	-0.22186	-0.00013386	603.3430308501394	100.82	0.59573	100.05	99.774	100.37	-0.76401	0.060331	0.0015639	NaN	49.536	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37071	+		36516	31543	30088	30113							0.07619123508811754
LVGYVEGDKII	11	Unmodified	_LVGYVEGDKII_					0	0	0			REV__tr|A0A7D6VSV6|A0A7D6VSV6_9CLOTGAFdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05520PE=3SV=1	REV__tr|A0A7D6VSV6|A0A7D6VSV6_9CLOTGAFdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05520PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	603.342446	1204.67034	0.91463	0.00055184	-1.0667	-0.0006436	-0.15208	-9.1759E-05	603.3416378702702	101.54	1.3583	99.932	99.243	100.6	-1.6053	-0.059146	-0.0012562	NaN	49.536	38	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34991	+		36517	31543	30088	30113							0.07619123508811754
LVHAGIIEAVN	11	Unmodified	_LVHAGIIEAVN_					0	0	0			REV__tr|A0A553SMK3|A0A553SMK3_NIACIS-adenosylmethioninedecarboxylaseproenzymeOS=NialliacirculansOX=1397GN=speDPE=3SV=1	REV__tr|A0A553SMK3|A0A553SMK3_NIACIS-adenosylmethioninedecarboxylaseproenzymeOS=NialliacirculansOX=1397GN=speDPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	568.3106689453125	2	568.327131	1134.63971	0.36491	0.00020739	4.4777	0.0025448	4.8426	0.0027522	568.8316923730268	87.049	0.29835	85.618	85.543	85.841	-1.4311					7	5	2	0	0	0	0.025681	1	7587	7587		26.693	1.1189	1	19037	+		36518	30341	30089	30114	39892	39892					0.07777389914417654
LVHALNPSL	9	Unmodified	_LVHALNPSL_					0	0	0		ENST00000535572.5_1_12:1018313-1018520:+|nuORF	ENST00000535572.5_1_12:1018313-1018520:+|nuORF	ENST00000535572.5_1_12:1018313-1018520:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	482.28369140625	2	482.284734	962.554916	1.4873	0.00071731	-1.7499	-0.00084393	-0.26255	-0.00012662	482.2838148117403	88.658	2.4683	87.29	86.839	89.307	-1.3676					116	49	4	0	0	0	0.40667	1	7818	7818		51.335	3.4199	1	1008100			36519	13379	30090	30115	39893	39893					0.07214064168454115
LVHFHSTPPPG	11	Unmodified	_LVHFHSTPPPG_					0	0	0			REV__ENST00000549209.5_1_12:56565201-56568439:-|nuORF;REV__nc|ENSG00000139613|Q8TAQ2-2|SMARCC2	REV__nc|ENSG00000139613|Q8TAQ2-2|SMARCC2	MULTI-MSMS	OvCa9_classI_Rep2	2	594.8123779296875	2	594.811648	1187.60874	-0.82464	-0.00049051	0.18121	0.00010778	-0.64344	-0.00038272	594.8116926520327	32.231	1.1871	29.521	29.184	30.371	-2.7097					33	23	2	0	0	0	0.72459	1	1057	1057		20.947	0.95016	1	62017	+		36520	27454;19621	30091	30116	39894	39894					0.022442366001541814
LVHFLDISL	9	Unmodified	_LVHFLDISL_					0	0	0			REV__UBR1|p.D1423Vfs*11|1|0.83|ENSG00000159459|chr15:42976794-42976818|GAACTAACTGAAGAAGGCTGCAGAT/-|frameshift_variant	REV__UBR1|p.D1423Vfs*11|1|0.83|ENSG00000159459|chr15:42976794-42976818|GAACTAACTGAAGAAGGCTGCAGAT/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.3545532226562	2	528.808042	1055.60153	1.282	0.00067793	0.94716	0.00050087	2.2292	0.0011788	528.8086021191564	147.18	0.44102	147.18	146.87	147.31	0					11	8	2	0	0	0	0.027449	1	17186	17186		40.573	6.4001	1	13479	+		36521	20617	30092	30117	39895	39895					0.07595503999755238
LVHHFYLSH	9	Unmodified	_LVHHFYLSH_					0	0	0			REV__ENST00000377996.5_1_9:35846336-35847153:+|nuORF	REV__ENST00000377996.5_1_9:35846336-35847153:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	575.8521728515625	2	576.801083	1151.58761	0.56193	0.00032412	0.45674	0.00026345	1.0187	0.00058757	576.8012530197692	87.481	0.78872	86.05	85.642	86.431	-1.4311					23	15	2	0	0	0	0.027462	1	7677	7677		33.516	10.936	1	12041	+		36522	25133	30093	30118	39896	39896					0.017882712913205978
LVHHFYLSH	9	Unmodified	_LVHHFYLSH_					0	0	0			REV__ENST00000377996.5_1_9:35846336-35847153:+|nuORF	REV__ENST00000377996.5_1_9:35846336-35847153:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	576.801083	1151.58761	-1.32	-0.0007614	2.3989	0.0013837	1.0789	0.0006223	576.8026237108289	88.019	0.66119	85.888	85.752	86.413	-2.1309	-0.034186	0.00016	NaN	25.45	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18417	+		36523	25133	30093	30118							0.017882712913205978
LVHHFYLSH	9	Unmodified	_LVHHFYLSH_					0	0	0			REV__ENST00000377996.5_1_9:35846336-35847153:+|nuORF	REV__ENST00000377996.5_1_9:35846336-35847153:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	576.801083	1151.58761	-2.6223	-0.0015126	3.3821	0.0019508	0.75972	0.00043821	576.8030989384049	88.431	0.50685	85.828	85.629	86.136	-2.6027	-0.093572	0.0012941	NaN	25.45	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15913	+		36524	25133	30093	30118							0.017882712913205978
LVHLGMQLL	9	Unmodified	_LVHLGMQLL_					0	0	0			REV__PDXDC1-NOB1|1|fusion	REV__PDXDC1-NOB1|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.3512573242188	2	512.304613	1022.59467	1.459	0.00074743	0.78658	0.00040297	2.2455	0.0011504	512.3051587884717	130.52	0.52728	130.52	130.34	130.87	0					14	10	2	0	0	0	0.027373	1	15150	15150		71.378	27.261	1	33090	+		36525	19718	30094	30119	39897	39897					0.08427867847535708
LVHPNGLVI	9	Unmodified	_LVHPNGLVI_					0	0	0			REV__nc|ENSG00000073146|Q9BXT6-5|MOV10L1	REV__nc|ENSG00000073146|Q9BXT6-5|MOV10L1	MULTI-MSMS	OvCa9_classI_Rep3	3	481.2957763671875	2	481.295102	960.575651	-1.2517	-0.00060245	0.015584	7.5006E-06	-1.2362	-0.00059495	481.2950148812796	92.776	1.375	90.814	90.56	91.935	-1.9617					73	27	4	0	0	0	0.59983	1	5917	5917		31.955	2.8053	1	702020	+		36526	16933	30095	30120	39898	39898					0.0937865454814073
LVHPQWLL	8	Unmodified	_LVHPQWLL_					0	0	0		ENST00000595585.1_1_19:51452094-51455913:-|nuORF;chr19:50952668-50952898|331|19.3|0.19|6.69|-|ENST00000594846|KLK5,KLK5;ENSG00000167754|ENST00000336334|KLK5	ENST00000595585.1_1_19:51452094-51455913:-|nuORF	ENST00000595585.1_1_19:51452094-51455913:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	503.27752685546875	2	503.297645	1004.58074	-1.4474	-0.00072846	-2.9227	-0.001471	-4.3701	-0.0021994	503.2960139044088	84.152	0.63596	81.891	81.478	82.114	-2.261					17	13	2	0	0	0	0.028476	1	4808	4808		54.765	21.249	1	26110			36527	420	30096	30121	39899	39899					0.0786295841073752
LVHQDRSL	8	Unmodified	_LVHQDRSL_					0	0	0			REV__ENSG00000149548|ENST00000344762|CCDC15	REV__ENSG00000149548|ENST00000344762|CCDC15	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.2709655761719	2	484.269616	966.524678	-2.2164	-0.0010733	1.4214	0.00068833	-0.79501	-0.000385	484.2702484438338	49.57	1.0893	46.429	45.99	47.079	-3.1416					65	20	5	0	0	0	0.48084	2	2795	2795;2804		79.451	10.664	1	907850	+		36528	20170	30097	30122	39900;39901	39900					0.04007705503283887
LVHRLLHLLI	10	Unmodified	_LVHRLLHLLI_					0	0	0			REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|276|2|anti-sense	REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|276|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	409.60791015625	3	409.608042	1225.8023	0.6889	0.00028218	-0.83931	-0.00034379	-0.15041	-6.161E-05	409.60766459120623	104.29	12.102	103.72	103.28	115.38	-0.57639					699	244	5	0	0	0	0.70152	1	10093	10093		30.318	3.2704	1	1628000	+		36529	28550	30098	30123	39902	39902					0.19842818107099447
LVHRRKKETRY	11	Unmodified	_LVHRRKKETRY_					0	0	0		ENSG00000167601|ENST00000301178|AXL;nc|ENSG00000167601|P30530-2|AXL;ENST00000599659.5_1_19:41725288-41749617:+|nuORF	ENSG00000167601|ENST00000301178|AXL	ENSG00000167601|ENST00000301178|AXL	MULTI-MSMS	OvCa9_classI_Rep3	3	495.9588623046875	3	495.963548	1484.86881	-6.9251	-0.0034346	-2.8394	-0.0014083	-9.7645	-0.0048428	495.96202181719514	160.27	3.1017	158.94	157.33	160.43	-1.3316					146	60	3	0	0	0	0.72545	1	13795	13795		9.6461	0.43434	1	58509			36530	6811	30099	30124	39903	39903					0.14577401931023815
LVHRSSIS	8	Unmodified	_LVHRSSIS_					0	0	0			REV__ENST00000429162.2_1_15:44581227-44599615:+|nuORF	REV__ENST00000429162.2_1_15:44581227-44599615:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	449.7585144042969	2	449.758884	897.503215	0.96888	0.00043576	-0.8669	-0.0003899	0.10198	4.5868E-05	449.7583790937017	45.603	1.2142	45.603	45.373	46.587	0					55	27	4	0	0	0	0.47599	1	3155	3155		79.939	8.6435	1	4176100	+		36531	15739	30100	30125	39904	39904					0.05036320474573586
LVHSLVRVL	9	Unmodified	_LVHSLVRVL_					0	0	0		ENST00000495467.1_1_11:2320857-2324184:-|nuORF	ENST00000495467.1_1_11:2320857-2324184:-|nuORF	ENST00000495467.1_1_11:2320857-2324184:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.7593383789062	2	518.337301	1034.66005	-0.9456	-0.00049014	-0.020795	-1.0779E-05	-0.9664	-0.00050092	518.336615093958	39.507	0.25357	39.507	39.376	39.63	0					6	5	2	0	0	0	0.027462	1	2310	2310		23.042	5.6775	1	50296			36532	12777	30101	30126	39905	39905					0.14410605364878393
LVHTEYGKRI	10	Unmodified	_LVHTEYGKRI_					0	0	0			REV__ENST00000454703.6_1_4:185677671-185677848:-|nuORF	REV__ENST00000454703.6_1_4:185677671-185677848:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.88629150390625	3	405.899662	1214.67716	0.95613	0.00038809	-3.8673	-0.0015697	-2.9111	-0.0011816	405.8979382747397	35.434	0.74116	35.434	35.198	35.939	0					55	15	6	0	0	0	0.027001	1	1830	1830		28.081	16.985	1	837900	+		36533	26008	30102	30127	39906	39906					0.07840481180028291
LVHTEYGKRI	10	Unmodified	_LVHTEYGKRI_					0	0	0			REV__ENST00000454703.6_1_4:185677671-185677848:-|nuORF	REV__ENST00000454703.6_1_4:185677671-185677848:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	405.899662	1214.67716	-0.52775	-0.00021421	2.5567	0.0010378	2.0289	0.00082354	405.90049472018035	37.967	0.44177	35.258	34.928	35.37	-2.7097	-0.0881	0.0073769	NaN	21.686	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6697.1	+		36534	26008	30102	30127							0.07840481180028291
LVHVLCKNDE	10	Unmodified	_LVHVLCKNDE_					0	0	0			REV__ZC3H7A|p.I612V|1|0.21|ENSG00000122299|chr16:11763646-11763646|T/C|missense_variant	REV__ZC3H7A|p.I612V|1|0.21|ENSG00000122299|chr16:11763646-11763646|T/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	585.29736328125	2	585.302798	1168.59104	-7.712	-0.0045139	-1.7961	-0.0010513	-9.5081	-0.0055651	585.3015077710636	157.9	1.5857	156.73	156.12	157.71	-1.1707					60	43	3	0	0	0	0.70152	1	13619	13619		30.318	3.6248	1	24039	+		36535	32764	30103	30128	39907	39907					0.013491532830130382
LVIAAYFLL	9	Unmodified	_LVIAAYFLL_					0	0	0		nc|ENSG00000140675|P31639-2|SLC5A2;ENSG00000140675|ENST00000330498|SLC5A2	nc|ENSG00000140675|P31639-2|SLC5A2	nc|ENSG00000140675|P31639-2|SLC5A2	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.7798156738281	2	511.817879	1021.6212	1.6013	0.00081956	-4.0081	-0.0020514	-2.4068	-0.0012318	511.81568829486963	130.13	0.66548	130.13	129.87	130.53	0					25	13	3	0	0	0	0.027412	1	15112	15112		72.62	17.116	1	125420			36536	4866	30104	30129	39908	39908					0.11125880010501987
LVIAAYFLL	9	Unmodified	_LVIAAYFLL_					0	0	0		nc|ENSG00000140675|P31639-2|SLC5A2;ENSG00000140675|ENST00000330498|SLC5A2	nc|ENSG00000140675|P31639-2|SLC5A2	nc|ENSG00000140675|P31639-2|SLC5A2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	511.817879	1021.6212	0.2033	0.00010405	-1.6411	-0.00083994	-1.4378	-0.00073589	511.8148459304838	131.46	0.19817	130.34	130.24	130.44	-1.1249	0.10287	0.00030438	NaN	72.62	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4447.2			36537	4866	30104	30129							0.11125880010501987
LVIALPYII	9	Unmodified	_LVIALPYII_					0	0	0			REV__tr|A0A553SNJ3|A0A553SNJ3_NIACIBranched-chainaminoacidtransportsystemcarrierproteinOS=NialliacirculansOX=1397GN=brnQPE=3SV=1	REV__tr|A0A553SNJ3|A0A553SNJ3_NIACIBranched-chainaminoacidtransportsystemcarrierproteinOS=NialliacirculansOX=1397GN=brnQPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.8136901855469	2	507.833529	1013.6525	-0.1309	-6.6473E-05	-3.8187	-0.0019393	-3.9496	-0.0020057	507.8297577089032	96.202	0.24873	95.174	95.013	95.262	-1.0281					6	4	2	0	0	0	0.027462	1	8657	8657		21.702	0.7554	1	5208.7	+		36538	30426	30105	30130	39909	39909					0.1462245304460339
LVIDVTAKL	9	Unmodified	_LVIDVTAKL_					0	0	0		ENST00000266434.8_1_12:12247552-12251919:+|nuORF;ENSG00000121380|ENST00000308721|BCL2L14	ENST00000266434.8_1_12:12247552-12251919:+|nuORF	ENST00000266434.8_1_12:12247552-12251919:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.30914306640625	2	486.310418	970.606283	-0.36957	-0.00017972	0.29623	0.00014406	-0.073335	-3.5663E-05	486.3104765659595	123.79	1.1064	122.4	122.13	123.23	-1.3908					51	21	3	0	0	0	0.48324	1	11715	11715		44.117	0	1	188920			36539	3481	30106	30131	39910	39910					0.11980388142512766
LVIELLKLV	9	Unmodified	_LVIELLKLV_					0	0	0			REV__ENST00000486007.1_1_7:10977674-10979684:-|nuORF	REV__ENST00000486007.1_1_7:10977674-10979684:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.3123168945312	2	520.359911	1038.70527	1.9236	0.0010009	-3.5494	-0.001847	-1.6258	-0.00084601	520.3584500776393	80.562	0.25645	80.562	80.487	80.744	0					6	5	2	0	0	0	0.027462	1	8260	8260		26.796	6.3143	1	66381	+		36540	26577	30107	30132	39911	39911					0.1874641110741777
LVIETKGL	8	Unmodified	_LVIETKGL_					0	0	0			REV__ENST00000554882.5_1_14:31583096-31583144:-|nuORF	REV__ENST00000554882.5_1_14:31583096-31583144:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.7745666503906	2	436.776211	871.537869	-0.44072	-0.00019249	-2.8293	-0.0012358	-3.27	-0.0014283	436.7748691455194	144.87	2.2884	143.44	143.04	145.33	-1.4357					111	43	5	0	0	0	0.66704	1	14187	14187		50.025	2.1089	1	1417100	+		36541	27535	30108	30133	39912	39912					0.09696143562666748
LVIFFKKKK	9	Unmodified	_LVIFFKKKK_					0	0	0		L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|190|1|anti-sense	L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|190|1|anti-sense	L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|190|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	575.8514404296875	2	575.88917	1149.76379	0.90992	0.00052401	-3.8531	-0.0022189	-2.9432	-0.0016949	575.8869182093395	87.806	0.24207	86.375	86.189	86.431	-1.4311					6	4	2	0	0	0	0.027462	1	7649	7649		26.796	10.323	1	20099			36542	14653	30109	30134	39913	39913					0.19489512472546267
LVIFFKKKK	9	Unmodified	_LVIFFKKKK_					0	0	0		L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|190|1|anti-sense	L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|190|1|anti-sense	L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|190|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.8510131835938	2	575.88917	1149.76379	-1.0955	-0.00063087	-0.61502	-0.00035418	-1.7105	-0.00098505	576.3887761097128	88.926	0.24232	86.795	86.702	86.944	-2.1309					6	4	2	0	0	0	0.027462	1	5452	5452		33.516	19.378	1	36105			36543	14653	30109	30134	39914	39914					0.19489512472546267
LVIFIGITVYT	11	Unmodified	_LVIFIGITVYT_					0	0	0			REV__tr|A0A553SK34|A0A553SK34_NIACISuccinatedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_18045PE=4SV=1	REV__tr|A0A553SK34|A0A553SK34_NIACISuccinatedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_18045PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8695068359375	2	619.873382	1237.73221	-3.8587	-0.0023919	-2.4761	-0.0015349	-6.3348	-0.0039268	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.72466	1	15212	15212		19.997	0.89325	1	492670	+		36544	30071	30110	30135	39915	39915					0.12285474927944051
LVIFSISVF	9	Unmodified	_LVIFSISVF_					0	0	0			REV__ENST00000515057.1_1_4:141865852-141889013:-|nuORF	REV__ENST00000515057.1_1_4:141865852-141889013:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.3018798828125	2	512.807511	1023.60047	-0.57626	-0.00029551	-3.0493	-0.0015637	-3.6256	-0.0018592	512.8058034512283	103.59	0.73132	101.47	101.17	101.9	-2.1192					24	13	3	0	0	0	0.027456	1	9393	9393		38.806	8.9646	1	55583	+		36545	18142	30111	30136	39916	39916					0.08961289630860847
LVIGPPMLQL	10	Unmodified	_LVIGPPMLQL_					0	0	0			REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|286|1|anti-sense	REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|286|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	540.8209838867188	2	540.827921	1079.64129	-5.3143	-0.0028741	-1.4287	-0.00077266	-6.743	-0.0036468	540.826839745021	155.99	0.54268	154.92	154.74	155.28	-1.073					33	15	3	0	0	0	0.71192	1	13409	13409		29.15	3.6994	1	35530	+		36546	28208	30112	30137	39917	39917					0.1046530767882814
LVIGQAQL	8	Unmodified	_LVIGQAQL_					0	0	0		tr|A0A553SIS2|A0A553SIS2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15390PE=4SV=1	tr|A0A553SIS2|A0A553SIS2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15390PE=4SV=1	tr|A0A553SIS2|A0A553SIS2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15390PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	421.25970458984375	2	421.260728	840.506903	0.30073	0.00012669	-3.3692	-0.0014193	-3.0685	-0.0012926	421.25922240366054	134.3	0.7355	134.07	133.56	134.29	-0.22696					27	14	2	0	0	0	0.74679	1	13267	13267		28.254	1.4582	1	153990			36547	33419	30113	30138	39918	39918					0.08026990248424681
LVIHFGVVD	9	Unmodified	_LVIHFGVVD_					0	0	0		nc|ENSG00000106771|Q9H330-4|TMEM245;TMEM245|p.L666Sfs*9|1|0.2|ENSG00000106771|chr9:109050410-109050411|-/A|frameshift_variant;ENSG00000106771|ENST00000374586|TMEM245	nc|ENSG00000106771|Q9H330-4|TMEM245	nc|ENSG00000106771|Q9H330-4|TMEM245	MULTI-SECPEP	OvCa9_classI_Rep2	2	499.76513671875	2	499.78711	997.559667	0.47906	0.00023943	-2.7342	-0.0013665	-2.2551	-0.0011271	499.7858017703693	126.6	0.29698	126.37	126.29	126.59	-0.2359					8	5	2	0	0	0	0.027373	1	12388	12388		50.025	5.9077	1	23130			36548	2572	30114	30139	39919	39919					0.060789483112330345
LVIHWLLVVC	10	Unmodified	_LVIHWLLVVC_					0	0	0		ENST00000233099.5_1_2:37268352-37268403:-|nuORF	ENST00000233099.5_1_2:37268352-37268403:-|nuORF	ENST00000233099.5_1_2:37268352-37268403:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	597.856689453125	2	597.857012	1193.69947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	150.62	1	149.18	148.68	149.68	-1.4344								0	0	0	0.14353	1	14882	14882		19.36	0.25645	1				36549	9729	30115	30140	39920	39920					0.11036989324111346
LVIIGSELKQK	11	Unmodified	_LVIIGSELKQK_					0	0	0			REV__tr|A0A553SKF9|A0A553SKF9_NIACIAlanine--tRNAligaseOS=NialliacirculansOX=1397GN=alaSPE=3SV=1	REV__tr|A0A553SKF9|A0A553SKF9_NIACIAlanine--tRNAligaseOS=NialliacirculansOX=1397GN=alaSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	614.3857421875	2	614.387188	1226.75982	-5.0786	-0.0031202	1.5861	0.00097447	-3.4925	-0.0021457	614.387997754013	157.04	0.77016	156.81	156.57	157.34	-0.22696					47	20	3	0	0	0	0.72479	1	16013	16013		18.262	2.6203	1	63796	+		36550	30120	30116	30141	39921	39921					0.15551378188160925
LVIKIWKLI	9	Unmodified	_LVIKIWKLI_					0	0	0		ENST00000480058.5_1_6:4064966-4065116:+|nuORF	ENST00000480058.5_1_6:4064966-4065116:+|nuORF	ENST00000480058.5_1_6:4064966-4065116:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.3525390625	2	563.391545	1124.76854	0.84157	0.00047413	1.7766	0.0010009	2.6182	0.0014751	563.393061027794	117.42	0.312	116.06	115.93	116.24	-1.3645					6	5	2	0	0	0	0.027462	1	10994	10994		19.36	0	1	15449			36551	12517	30117	30142	39922	39922					0.2111439661532586
LVIKVPPPSS	10	Unmodified	_LVIKVPPPSS_					0	0	0		ENST00000599145.1_1_19:58928113-58929148:+|nuORF	ENST00000599145.1_1_19:58928113-58929148:+|nuORF	ENST00000599145.1_1_19:58928113-58929148:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	518.82421875	2	518.823692	1035.63283	0.85922	0.00044578	1.2828	0.00066554	2.142	0.0011113	518.8243139868886	143.93	1.2242	143.93	143.61	144.84	0					46	24	2	0	0	0	0.6104	1	16869	16869		40.778	0.20554	1	471590			36552	14204	30118	30143	39923	39923					0.11644077033838585
LVILEDLN	8	Unmodified	_LVILEDLN_					0	0	0			REV__tr|A0A553SNE3|A0A553SNE3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24300PE=4SV=1	REV__tr|A0A553SNE3|A0A553SNE3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24300PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.2522277832031	2	464.771126	927.527698	-0.31877	-0.00014816	1.8331	0.00085197	1.5143	0.00070381	464.7718643491172	58.104	1.0033	54.759	54.495	55.498	-3.3449					32	19	3	0	0	0	0.028476	1	3783	3783		11.511	5.1984	1	54833	+		36553	30413	30119	30144	39924	39924					0.06103535837428353
LVILKLCPK	9	Unmodified	_LVILKLCPK_					0	0	0		IQSEC3|p.T916Sfs*21|1|0.05|ENSG00000120645|chr12:165470-165471|-/GTGTGTG|frameshift_variant;IQSEC3|p.Y917Hfs*38|1|0.04|ENSG00000120645|chr12:165471-165472|-/ACATATATGTATATCTGTACCTGTAT|frameshift_variant;ENSG00000120645|ENST00000538872|IQSEC3;nc|ENSG00000120645|Q9UPP2-2|IQSEC3	IQSEC3|p.T916Sfs*21|1|0.05|ENSG00000120645|chr12:165470-165471|-/GTGTGTG|frameshift_variant	IQSEC3|p.T916Sfs*21|1|0.05|ENSG00000120645|chr12:165470-165471|-/GTGTGTG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.2760620117188	2	513.840831	1025.66711	0.75667	0.00038881	2.7361	0.0014059	3.4928	0.0017947	513.8420873241467	92.128	0.63132	90.893	90.642	91.273	-1.2355					19	11	2	0	0	0	0.027462	1	8221	8221		0.99688	0	1	18063			36554	3437	30120	30145	39925	39925					0.15530201921092157
LVILRYKDS	9	Unmodified	_LVILRYKDS_					0	0	0			REV__nc|ENSG00000082126|Q96JB8-5|MPP4	REV__nc|ENSG00000082126|Q96JB8-5|MPP4	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8300170898438	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.61208	1	11802	11802		30.504	1.3541	1	308210	+		36555	17080	30121	30146	39926	39926					0.10094577919790026
LVILRYKDS	9	Unmodified	_LVILRYKDS_					0	0	0			REV__nc|ENSG00000082126|Q96JB8-5|MPP4	REV__nc|ENSG00000082126|Q96JB8-5|MPP4	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8304443359375	2	553.832049	1105.64954	0.13277	7.3535E-05	-3.4573	-0.0019148	-3.3245	-0.0018412	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.48324	1	14238	14238		44.117	16.235	1	400120	+		36556	17080	30121	30146	39927	39927					0.10094577919790026
LVILYGLTS	9	Unmodified	_LVILYGLTS_					0	0	0		ENSG00000197147|ENST00000330947|LRRC8B	ENSG00000197147|ENST00000330947|LRRC8B	ENSG00000197147|ENST00000330947|LRRC8B	MULTI-MSMS	OvCa99_classI_Rep5	1	489.7999572753906	2	489.797143	977.579734	0.35762	0.00017516	4.1576	0.0020364	4.5152	0.0022115	489.79900077673824	160.64	3.1469	160.64	159.38	162.53	0					149	62	3	0	0	0	0.6959	1	18968	18968		19.36	1.0356	1	288360			36557	8683	30122	30147	39928	39928					0.09004699251181592
LVINFLPPL	9	Unmodified	_LVINFLPPL_					0	0	0			REV__L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|137|3|sense	REV__L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|137|3|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	513.8262329101562	2	513.323328	1024.6321	1.1851	0.00060836	2.3203	0.0011911	3.5055	0.0017994	513.8246530993847	67.449	2.102	64.562	64.137	66.239	-2.8873					146	41	6	0	0	0	0.63108	1	2867	2867		28.254	1.4582	1	2025700	+		36558	28516	30123	30148	39929	39929					0.12077282384802857
LVINKNNLT	9	Unmodified	_LVINKNNLT_					0	0	0			REV__tr|A0A553ST35|A0A553ST35_NIACIYdhG-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04205PE=4SV=1	REV__tr|A0A553ST35|A0A553ST35_NIACIYdhG-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04205PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.8107299804688	2	514.808574	1027.60259	0.21733	0.00011188	3.1949	0.0016447	3.4122	0.0017566	514.8099201928084	115.09	2.1184	113.69	112.99	115.11	-1.3977					90	41	5	0	0	0	0.13154	1	10712	10712		88.643	0.94643	1	518660	+		36559	30912	30124	30149	39930	39930					0.08989718368638933
LVINRIGDL	9	Unmodified	_LVINRIGDL_					0	0	0			REV__ENSG00000134463|ENST00000379215|ECHDC3	REV__ENSG00000134463|ENST00000379215|ECHDC3	MULTI-MSMS	OvCa9_classI_Rep2	2	506.80999755859375	2	506.811116	1011.60768	1.4081	0.00071364	-2.4174	-0.0012251	-1.0093	-0.00051151	506.809990859047	88.555	2.3705	87.187	86.69	89.061	-1.3676					168	47	5	0	0	0	0.48324	1	7828	7828		44.117	1.2525	1	5233500	+		36560	19206	30125	30150	39931	39931					0.10234022231270501
LVIPLEMGTML	11	Unmodified	_LVIPLEMGTML_					0	0	0		nc|ENSG00000165915|Q96H72-2|SLC39A13;ENSG00000165915|ENST00000362021|SLC39A13	nc|ENSG00000165915|Q96H72-2|SLC39A13	nc|ENSG00000165915|Q96H72-2|SLC39A13	MULTI-MSMS	OvCa99_classI_Rep5	1	608.8372192382812	2	608.837628	1215.6607	1.2125	0.00073819	-1.0401	-0.00063324	0.17237	0.00010495	608.8368613491077	156.48	2.1073	156.48	156.04	158.15	0					128	41	5	0	0	0	0.69081	1	18305	18305		32.812	1.2826	1	3302900			36561	6611	30126	30151	39932	39932					0.06149895907424252
LVIRCVIPS	9	Unmodified	_LVIRCVIPS_					0	0	0		ENSG00000135577|ENST00000258042|NMBR	ENSG00000135577|ENST00000258042|NMBR	ENSG00000135577|ENST00000258042|NMBR	MULTI-MSMS	OvCa9_classI_Rep2	2	500.3041076660156	2	500.304613	998.594672	-0.60307	-0.00030172	0.014568	7.2885E-06	-0.5885	-0.00029443	500.3045681460816	93.714	1.8288	92.615	91.973	93.802	-1.0995					109	35	5	0	0	0	0.091859	2	8380	8362;8380		99.375	10.732	1	1396500			36562	4390	30127	30152	39933;39934	39934					0.09531867847545072
LVISAVAAGL	10	Unmodified	_LVISAVAAGL_					0	0	0		tr|A0A553SHK9|A0A553SHK9_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_13120PE=3SV=1	tr|A0A553SHK9|A0A553SHK9_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_13120PE=3SV=1	tr|A0A553SHK9|A0A553SHK9_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_13120PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	457.2909240722656	2	457.289485	912.564418	0.99148	0.00045339	1.428	0.000653	2.4195	0.0011064	457.28999347617025	141.89	2.9183	141.89	141.44	144.35	0					112	58	3	0	0	0	0.50656	1	16647	16647		53.351	1.0523	1	466050			36563	33282	30128	30153	39935	39935					0.10463832454001931
LVISKTIKP	9	Unmodified	_LVISKTIKP_					0	0	0		ENST00000237937.7_1_9:74970216-74970255:-|nuORF	ENST00000237937.7_1_9:74970216-74970255:-|nuORF	ENST00000237937.7_1_9:74970216-74970255:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.9449157714844	2	499.83406	997.653567	1.5528	0.00077616	0.084389	4.2181E-05	1.6372	0.00081834	499.83398651822495	78.85	0.3709	78.85	78.625	78.996	0					14	8	2	0	0	0	0.027462	1	8008	8008		40.778	14.085	1	495090			36564	9749	30129	30154	39936	39936					0.15464667413516509
LVIVFVLMF	9	Unmodified	_LVIVFVLMF_					0	0	0		tr|A0A553SRZ8|A0A553SRZ8_NIACIDUF4181domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02110PE=4SV=1	tr|A0A553SRZ8|A0A553SRZ8_NIACIDUF4181domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02110PE=4SV=1	tr|A0A553SRZ8|A0A553SRZ8_NIACIDUF4181domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02110PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	540.8310546875	2	540.829932	1079.64531	-0.46856	-0.00025341	3.1873	0.0017238	2.7188	0.0014704	540.8317360682152	123.45	3.5017	123.21	122.89	126.4	-0.23193					177	70	5	0	0	0	0.61768	1	12087	12087		29.842	1.9593	1	7794400			36565	34316	30130	30155	39937	39937					0.10867397172546589
LVIVIANFISN	11	Unmodified	_LVIVIANFISN_					0	0	0		tr|A0A7D7A0A1|A0A7D7A0A1_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09520PE=4SV=1	tr|A0A7D7A0A1|A0A7D7A0A1_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09520PE=4SV=1	tr|A0A7D7A0A1|A0A7D7A0A1_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09520PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	601.279541015625	2	601.860806	1201.70706	-0.30877	-0.00018584	-3.8302	-0.0023052	-4.139	-0.0024911	601.8585728497737	65.839	0.48653	62.354	62.179	62.665	-3.4854					21	9	3	0	0	0	0.025418	1	4780	4780		32.751	5.7032	1	47705			36566	35992	30131	30156	39938	39938					0.11427420125392018
LVIVRCRSL	9	Unmodified	_LVIVRCRSL_					0	0	0			REV__ENSG00000124535|ENST00000380773|WRNIP1	REV__ENSG00000124535|ENST00000380773|WRNIP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.8092041015625	2	529.828786	1057.64302	-2.1409	-0.0011343	-2.1333	-0.0011303	-4.2742	-0.0022646	530.3296636865887	61.603	1.3165	58.844	58.515	59.832	-2.7593					54	25	3	0	0	0	0.027462	1	4593	4593		30.504	2.6214	1	30525	+		36567	18691	30132	30157	39939	39939					0.11650361487431837
LVIYATFVD	9	Unmodified	_LVIYATFVD_					0	0	0			REV__nc|ENSG00000144712|O75155-2|CAND2	REV__nc|ENSG00000144712|O75155-2|CAND2	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.312255859375	2	520.786776	1039.559	1.0471	0.00054533	0.24066	0.00012533	1.2878	0.00067066	520.7869485563432	79.415	0.46605	79.415	79.119	79.585	0					14	11	2	0	0	0	0.027462	1	8068	8068		26.796	0	1	1424900	+		36568	19928	30133	30158	39940	39940					0.04080108871517041
LVKASVTFFD	10	Unmodified	_LVKASVTFFD_					0	0	0		tr|A0A553SQF8|A0A553SQF8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07655PE=4SV=1	tr|A0A553SQF8|A0A553SQF8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07655PE=4SV=1	tr|A0A553SQF8|A0A553SQF8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07655PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	563.84423828125	2	563.810782	1125.60701	-0.96486	-0.000544	-2.4028	-0.0013547	-3.3676	-0.0018987	563.8107841206354	116.68	0.5442	115.64	115.39	115.93	-1.0414					17	10	3	0	0	0	0.026464	1	8706	8706		60.118	8.7828	1	20347			36569	34153	30134	30159	39941	39941					0.04923182791549152
LVKDVLEEKWK	11	Unmodified	_LVKDVLEEKWK_					0	0	0			REV__tr|A0A7D6VRY6|A0A7D6VRY6_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07490PE=4SV=1	REV__tr|A0A7D6VRY6|A0A7D6VRY6_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07490PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	462.93682861328125	3	462.937894	1385.79185	0.079191	3.666E-05	-2.8418	-0.0013156	-2.7626	-0.0012789	462.9367014144655	44.408	4.3763	41.698	41.303	45.679	-2.7097					263	87	6	0	0	0	0.72069	1	2670	2670		22.562	2.2466	1	4456400	+		36570	31456	30135	30160	39942	39942					0.11438745871282663
LVKEEVNAE	9	Unmodified	_LVKEEVNAE_					0	0	0			REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MSMS	OvCa9_classI_Rep2	2	515.7739868164062	2	515.774396	1029.53424	0.25666	0.00013238	-0.44158	-0.00022776	-0.18492	-9.5376E-05	515.7741357954794	109.36	1.83	109.19	108.52	110.35	-0.17237					68	36	2	0	0	0	0.2077	1	10243	10243		75.043	9.5779	1	218150	+		36571	22932	30136	30161	39943	39943					0.02065428998139396
LVKEEVNAE	9	Unmodified	_LVKEEVNAE_					0	0	0			REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-MSMS	OvCa9_classI_Rep3	3	515.7739868164062	2	515.774396	1029.53424	0.6844	0.000353	-0.88489	-0.0004564	-0.20049	-0.00010341	515.7739065708082	110.02	1.9535	108.87	108.45	110.41	-1.1444					80	37	3	0	0	0	0.2422	1	7938	7938		69.628	3.1983	1	355220	+		36572	22932	30136	30161	39944	39944					0.02065428998139396
LVKESIRLP	9	Unmodified	_LVKESIRLP_					0	0	0			REV__ENSG00000168763|ENST00000305510|CNNM3	REV__ENSG00000168763|ENST00000305510|CNNM3	MULTI-SECPEP	OvCa9_classI_Rep2	2	527.8160400390625	2	527.834591	1053.65463	-1.0944	-0.00057764	-0.31558	-0.00016658	-1.41	-0.00074422	528.3354135099366	103.95	1.3352	103.37	103.03	104.36	-0.57639					47	26	2	0	0	0	0.027462	1	9727	9727		42.396	1.618	1	364140	+		36573	21399	30137	30162	39945	39945					0.12994881782401535
LVKEVILI	8	Unmodified	_LVKEVILI_					0	0	0			REV__ENST00000557026.5_1_14:75551269-75572727:-|nuORF	REV__ENST00000557026.5_1_14:75551269-75572727:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	463.8190002441406	2	463.817879	925.621205	1.1332	0.00052558	0.89992	0.0004174	2.0331	0.00094298	463.8181384508825	155.12	2.5278	155.12	154.47	157	0					119	49	3	0	0	0	0.64026	1	18129	18129		55.504	4.1688	1	188430	+		36574	18455	30138	30163	39946	39946					0.15541880010528075
LVKEVVIPE	9	Unmodified	_LVKEVVIPE_					0	0	0		tr|A0A7D6ZTU3|A0A7D6ZTU3_9CLOTStageVsporulationproteinDOS=ClostridiumintestinaleOX=36845GN=HZF06_14695PE=3SV=1	tr|A0A7D6ZTU3|A0A7D6ZTU3_9CLOTStageVsporulationproteinDOS=ClostridiumintestinaleOX=36845GN=HZF06_14695PE=3SV=1	tr|A0A7D6ZTU3|A0A7D6ZTU3_9CLOTStageVsporulationproteinDOS=ClostridiumintestinaleOX=36845GN=HZF06_14695PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.8323364257812	2	513.3157	1024.61685	2.0417	0.001048	-2.6746	-0.0013729	-0.63291	-0.00032488	513.314178078536	110.47	0.58074	110.47	110.18	110.76	0					20	12	2	0	0	0	0.027462	1	12505	12505		31.955	0	1	263760			36575	35757	30139	30164	39947	39947					0.1055237079692688
LVKFAPAVLS	10	Unmodified	_LVKFAPAVLS_					0	0	0			REV__ENSG00000255587|ENST00000612677|RAB44	REV__ENSG00000255587|ENST00000612677|RAB44	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.824951171875	2	522.826235	1043.63792	-1.2156	-0.00063554	-3.1403	-0.0016418	-4.3559	-0.0022774	522.824557169564	81.502	1.6045	78.791	78.199	79.804	-2.7106					115	32	5	0	0	0	0.33376	1	6709	6709		76.774	5.4784	1	2410100	+		36576	23531	30140	30165	39948	39948					0.11784380896460789
LVKFTGSLKN	10	Unmodified	_LVKFTGSLKN_					0	0	0			REV__ENST00000375859.3_1_9:91091230-91091383:+|nuORF	REV__ENST00000375859.3_1_9:91091230-91091383:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8291625976562	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.73378	1	14116	14116		26.693	1.2427	1	245610	+		36577	25091	30141	30166	39949	39949					0.10094577919812764
LVKFTGSLKN	10	Unmodified	_LVKFTGSLKN_					0	0	0			REV__ENST00000375859.3_1_9:91091230-91091383:+|nuORF	REV__ENST00000375859.3_1_9:91091230-91091383:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8297729492188	2	553.832049	1105.64954	-2.2198	-0.0012294	-1.4062	-0.0007788	-3.626	-0.0020082	553.8311075714116	139.08	3.9663	138.02	135.98	139.95	-1.0595					202	80	4	0	0	0	0.74374	1	11469	11469		25.574	1.3713	1	74733	+		36578	25091	30141	30166	39950	39950					0.10094577919812764
LVKGDSRW	8	Unmodified	_LVKGDSRW_					0	0	0		ENSG00000171219|ENST00000342711|CDC42BPG;CDC42BPG|p.V230Gfs*13|1|0.12|ENSG00000171219|chr11:64839220-64839221|-/GGCACGTCCGGGGGGAACTGCAGGTGGTC|frameshift_variant	ENSG00000171219|ENST00000342711|CDC42BPG	ENSG00000171219|ENST00000342711|CDC42BPG	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.76898193359375	2	480.766709	959.518865	0.11463	5.511E-05	-0.42615	-0.00020488	-0.31152	-0.00014977	480.76637305248687	56.948	2.4306	53.603	52.668	55.098	-3.3449					134	47	4	0	0	0	0.59148	1	3653	3653		65.803	5.5092	1	828540			36579	7185	30142	30167	39951	39951					0.03748606991609904
LVKGLSELK	9	Unmodified	_LVKGLSELK_					0	0	0			REV__tr|A0A7D6ZFW7|A0A7D6ZFW7_9CLOTP-typeCa(2+)transporterOS=ClostridiumintestinaleOX=36845GN=HZF06_16745PE=4SV=1	REV__tr|A0A7D6ZFW7|A0A7D6ZFW7_9CLOTP-typeCa(2+)transporterOS=ClostridiumintestinaleOX=36845GN=HZF06_16745PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.79583740234375	2	493.815867	985.617182	0.49402	0.00024396	-1.2037	-0.00059439	-0.70964	-0.00035043	493.8150641572939	59.91	0.98466	56.48	56.259	57.244	-3.43					34	19	2	0	0	0	0.027462	1	4000	4000		53.351	9.2347	1	47973	+		36580	31985	30143	30168	39952	39952					0.12379790516797584
LVKGLSELK	9	Unmodified	_LVKGLSELK_					0	0	0			REV__tr|A0A7D6ZFW7|A0A7D6ZFW7_9CLOTP-typeCa(2+)transporterOS=ClostridiumintestinaleOX=36845GN=HZF06_16745PE=4SV=1	REV__tr|A0A7D6ZFW7|A0A7D6ZFW7_9CLOTP-typeCa(2+)transporterOS=ClostridiumintestinaleOX=36845GN=HZF06_16745PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	493.815867	985.617182	0.077986	3.8511E-05	-0.32664	-0.0001613	-0.24865	-0.00012279	493.815502769561	59.24	1.0917	56.46	56.137	57.228	-2.7801	-0.0099741	0.00039466	NaN	35.618	28	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21364	+		36581	31985	30143	30168							0.12379790516797584
LVKILSILYV	10	Unmodified	_LVKILSILYV_					0	0	0		tr|A0A7D7A1X1|A0A7D7A1X1_9CLOTPolysaccharidebiosynthesisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06090PE=4SV=1	tr|A0A7D7A1X1|A0A7D7A1X1_9CLOTPolysaccharidebiosynthesisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06090PE=4SV=1	tr|A0A7D7A1X1|A0A7D7A1X1_9CLOTPolysaccharidebiosynthesisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06090PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	580.885009765625	2	580.886293	1159.75803	-0.23458	-0.00013626	-2.1764	-0.0012643	-2.411	-0.0014005	580.8849527747275	20.899	0.28508	20.899	20.776	21.061	0					10	5	3	0	0	0	0.81289	1	65	65		17.365	2.5001	1	72559			36582	36051	30144	30169	39953	39953					0.18454369170217433
LVKKEKEQRTR	11	Unmodified	_LVKKEKEQRTR_					0	0	0		CDK12|p.P653L|1|0.58|ENSG00000167258|chr17:39490583-39490583|C/T|missense_variant	CDK12|p.P653L|1|0.58|ENSG00000167258|chr17:39490583-39490583|C/T|missense_variant	CDK12|p.P653L|1|0.58|ENSG00000167258|chr17:39490583-39490583|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	472.28216552734375	3	472.287808	1413.8416	-6.0447	-0.0028549	-2.5284	-0.0011941	-8.5731	-0.004049	472.28675973301637	159.08	3.3809	157.81	156.71	160.09	-1.267					177	72	4	0	0	0	0.72524	1	13825	13825		12.433	3.6335	1	110830			36583	213	30145	30170	39954	39954					0.15122873599966624
LVKKGVAS	8	Unmodified	_LVKKGVAS_					0	0	0			REV__ENST00000492979.2_1_7:76019335-76019617:-|nuORF	REV__ENST00000492979.2_1_7:76019335-76019617:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	401.26226806640625	2	401.263271	800.511988	1.296	0.00052003	-4.2066	-0.001688	-2.9106	-0.0011679	401.26147123184654	136.26	1.7613	136.04	135.22	136.99	-0.22696					76	35	3	0	0	0	0.7327	1	13551	13551		8.8223	0.59103	1	533840	+		36584	26699	30146	30171	39955	39955					0.10375294111042876
LVKKKIPII	9	Unmodified	_LVKKKIPII_					0	0	0		nc|ENSG00000130377|Q5FVE4-4|ACSBG2;nc|ENSG00000130377|Q5FVE4-3|ACSBG2;ENST00000591741.5_1_19:6161567-6190665:+|nuORF;nc|ENSG00000130377|Q5FVE4-2|ACSBG2;ENSG00000130377|ENST00000588485|ACSBG2	nc|ENSG00000130377|Q5FVE4-4|ACSBG2	nc|ENSG00000130377|Q5FVE4-4|ACSBG2	MULTI-MSMS	OvCa99_classI_Rep5	1	526.3839111328125	2	526.38372	1050.75289	0.8396	0.00044195	1.0522	0.00055387	1.8918	0.00099582	526.3841229635275	155.77	3.4661	155.77	154.72	158.19	0					132	68	3	0	0	0	0.14739	1	18279	18279		85.359	19.556	1	97397			36585	3984	30147	30172	39956	39956					0.22954110098271485
LVKKLSIAFL	10	Unmodified	_LVKKLSIAFL_					0	0	0		tr|A0A7D6ZTM7|A0A7D6ZTM7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20840PE=4SV=1	tr|A0A7D6ZTM7|A0A7D6ZTM7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20840PE=4SV=1	tr|A0A7D6ZTM7|A0A7D6ZTM7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20840PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.2993774414062	2	566.378635	1130.74272	2.0605	0.001167	-3.9404	-0.0022318	-1.8799	-0.0010647	566.3741429830495	134.7	0.26007	134.7	134.52	134.78	0					8	5	2	0	0	0	0.027228	1	15674	15674		16.473	0	1	109090			36586	35755	30148	30173	39957	39957					0.18257502373035095
LVKKPRPYHHF	11	Unmodified	_LVKKPRPYHHF_					0	0	0			REV__tr|A0A7D6ZSG2|A0A7D6ZSG2_9CLOTClassISAM-dependentmethyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07625PE=4SV=1	REV__tr|A0A7D6ZSG2|A0A7D6ZSG2_9CLOTClassISAM-dependentmethyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07625PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.2900085449219	3	474.610334	1420.80917	0.030689	1.4565E-05	-3.7665	-0.0017876	-3.7358	-0.001773	474.608557746266	96.247	0.64561	95.219	94.963	95.609	-1.0281					16	12	2	0	0	0	0.02625	1	8652	8652		18.531	0	1	22402	+		36587	32185	30149	30174	39958	39958					0.1156013098764106
LVKKVRDF	8	Unmodified	_LVKKVRDF_					0	0	0			REV__tr|A0A7D6VXR5|A0A7D6VXR5_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_09785PE=3SV=1	REV__tr|A0A7D6VXR5|A0A7D6VXR5_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_09785PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	502.8134460449219	2	502.816202	1003.61785	-5.7843	-0.0029085	1.4056	0.00070674	-4.3788	-0.0022017	502.8168335130942	153.97	1.772	152.96	152.62	154.39	-1.0076					110	37	4	0	0	0	0.75723	1	13260	13260		23.042	1.0826	1	860080	+		36588	31787	30150	30175	39959	39959					0.11618629956512905
LVKLHRNLM	9	Unmodified	_LVKLHRNLM_					0	0	0		nc|ENSG00000134215|Q9UKW4-2|VAV3;ENST00000343258.8_1_1:108115955-108328118:-|nuORF;ENSG00000134215|ENST00000370056|VAV3;nc|ENSG00000134215|Q9UKW4-4|VAV3	nc|ENSG00000134215|Q9UKW4-2|VAV3	nc|ENSG00000134215|Q9UKW4-2|VAV3	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.34326171875	2	562.342061	1122.66957	1.2434	0.00069921	1.201	0.00067537	2.4444	0.0013746	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.6653	1	14256	14256		24.203	0	1	683710			36589	10595	30151	30176	39960	39960					0.11314050378769025
LVKNPELLN	9	Unmodified	_LVKNPELLN_					0	0	0			REV__tr|A0A7D6VSK7|A0A7D6VSK7_9CLOTSMI1/KNR4familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09700PE=4SV=1	REV__tr|A0A7D6VSK7|A0A7D6VSK7_9CLOTSMI1/KNR4familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09700PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.312255859375	2	520.310949	1038.60735	0.40177	0.00020904	-2.1828	-0.0011358	-1.7811	-0.00092671	520.3102777714577	84.232	5.6405	81.569	80.486	86.126	-2.6629					292	114	6	0	0	0	0.50149	1	7273	7273		42.396	0.96952	1	49620000	+		36590	31514	30152	30177	39961	39961					0.08958602511438585
LVKNQEVALI	10	Unmodified	_LVKNQEVALI_					0	0	0			REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-MSMS	OvCa9_classI_Rep3	3	563.84423828125	2	563.845156	1125.67576	-0.9348	-0.00052708	0.78994	0.00044541	-0.14486	-8.1679E-05	563.8454049954004	116.57	0.84015	115.53	115.14	115.98	-1.0414					46	16	4	0	0	0	0.22663	1	8706	8706		90.37	6.7228	1	486550	+		36591	20863	30153	30178	39962	39962					0.11794847091277916
LVKPRSLLA	9	Unmodified	_LVKPRSLLA_					0	0	0			REV__tr|A0A553SFZ4|A0A553SFZ4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09760PE=4SV=1	REV__tr|A0A553SFZ4|A0A553SFZ4_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09760PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.8322448730469	2	498.831852	995.649151	-0.21545	-0.00010747	-0.44471	-0.00022183	-0.66015	-0.00032931	498.8316195195434	72.795	2.813	70.307	69.884	72.697	-2.4873					132	56	5	0	0	0	0.42676	1	3487	3487		49.442	0.23076	1	2522500	+		36592	29640	30154	30179	39963	39963					0.15115202990602938
LVKPYVKIL	9	Unmodified	_LVKPYVKIL_					0	0	0		ENSG00000265817|ENST00000481490|FSBP	ENSG00000265817|ENST00000481490|FSBP	ENSG00000265817|ENST00000481490|FSBP	MULTI-MSMS	OvCa99_classI_Rep5	1	536.8612060546875	2	536.860078	1071.7056	1.452	0.00077952	0.4551	0.00024433	1.9071	0.0010239	536.8601265749744	130.59	0.90569	130.59	130.29	131.2	0					40	18	3	0	0	0	0.098892	1	15165	15165		97.473	8.8298	1	382810			36593	9524	30155	30180	39964	39964					0.17261830827260383
LVKRGDDD	8	Unmodified	_LVKRGDDD_					0	0	0		tr|A0A553SGL1|A0A553SGL1_NIACISigma-70familyRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=CEQ21_11080PE=3SV=1	tr|A0A553SGL1|A0A553SGL1_NIACISigma-70familyRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=CEQ21_11080PE=3SV=1	tr|A0A553SGL1|A0A553SGL1_NIACISigma-70familyRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=CEQ21_11080PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.7776184082031	2	459.237981	916.461409	-1.1153	-0.00051218	0.28343	0.00013016	-0.83186	-0.00038202	459.2383178426314	54.149	0.9729	50.901	50.722	51.695	-3.2474					29	18	2	0	0	0	0.028476	1	3388	3388		45.952	0	1	152990			36594	33170	30156	30181	39965	39965					-0.00016280004626878508
LVKRHQKV	8	Unmodified	_LVKRHQKV_					0	0	0			REV__ENST00000448052.1_1_1:84551619-84551913:+|nuORF	REV__ENST00000448052.1_1_1:84551619-84551913:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	504.3272705078125	2	504.327268	1006.63998	-0.87551	-0.00044155	-0.01701	-8.5788E-06	-0.89252	-0.00045012	504.3273117553292	26.667	1.3488	26.667	26.442	27.791	0					75	26	5	0	0	0	0.73938	1	707	707		31.955	1.4512	1	5633300	+		36595	25928	30157	30182	39966	39966					0.13692854424937195
LVKSQHLLI	9	Unmodified	_LVKSQHLLI_					0	0	0			REV__ENST00000478470.5_1_7:151168680-151174458:-|nuORF	REV__ENST00000478470.5_1_7:151168680-151174458:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.837158203125	2	525.837134	1049.65972	0.017548	9.2276E-06	-0.43437	-0.00022841	-0.41682	-0.00021918	525.8368001771031	114.12	1.6848	112.67	112.34	114.02	-1.4461					77	32	4	0	0	0	0.16524	1	10607	10607		82.305	8.05	1	141600	+		36596	26415	30158	30183	39967	39967					0.1368718564503979
LVKSRLKR	8	Unmodified	_LVKSRLKR_					0	0	0		ENSG00000181458|ENST00000323523|TMEM45A;ENST00000488904.1_1_3:100290155-100295859:+|nuORF	ENSG00000181458|ENST00000323523|TMEM45A	ENSG00000181458|ENST00000323523|TMEM45A	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.30474853515625	2	500.342918	998.671283	-0.89581	-0.00044821	2.0044	0.0010029	1.1086	0.00055467	500.34421707597227	94.527	0.55503	92.632	92.409	92.964	-1.8956					13	10	2	0	0	0	0.028476	1	6127	6127		47.916	15.103	1	16945			36597	7932	30159	30184	39968	39968					0.1718942745902723
LVKVDLVEL	9	Unmodified	_LVKVDLVEL_					0	0	0		tr|A0A7D6VT64|A0A7D6VT64_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06820PE=4SV=1	tr|A0A7D6VT64|A0A7D6VT64_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06820PE=4SV=1	tr|A0A7D6VT64|A0A7D6VT64_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06820PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.3218383789062	2	514.323525	1026.6325	-0.3677	-0.00018911	-0.018037	-9.2766E-06	-0.38573	-0.00019839	514.3233925462217	123.57	0.78957	122.2	121.95	122.74	-1.3666					39	15	3	0	0	0	0.46356	1	11701	11701		45.972	9.5255	1	99163			36598	35089	30160	30185	39969	39969					0.12024657313986609
LVKVVGLY	8	Unmodified	_LVKVVGLY_					0	0	0		nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	MULTI-SECPEP	OvCa9_classI_Rep2	2	444.8947448730469	2	445.789121	889.56369	0.64547	0.00028774	0.096976	4.3231E-05	0.74245	0.00033097	445.78919165982654	119.97	0.3457	119.8	119.59	119.94	-0.17137					9	6	2	0	0	0	0.028476	1	11545	11545		21.702	0	1	7747.2			36599	8965	30161	30186	39970	39970					0.11449037804936779
LVKWLKDL	8	Unmodified	_LVKWLKDL_					0	0	0		nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;ENST00000545078.1_1_12:124411346-124414067:+|nuORF;ENST00000492261.5_1_12:124409716-124414381:+|nuORF	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.267333984375	2	507.820953	1013.62735	-1.918	-0.000974	-2.2348	-0.0011349	-4.1528	-0.0021089	507.82012932196125	87.628	0.50176	85.001	84.901	85.403	-2.6269					13	9	2	0	0	0	0.028476	1	7494	7494		52.299	13.493	1	32441			36600	8733	30162	30187	39971	39971					0.12108398242025942
LVKWSLLVS	9	Unmodified	_LVKWSLLVS_					0	0	0			REV__nc|ENSG00000050820|P56945-6|BCAR1	REV__nc|ENSG00000050820|P56945-6|BCAR1	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.8246459960938	2	522.826235	1043.63792	-1.2156	-0.00063554	-3.1403	-0.0016418	-4.3559	-0.0022774	522.824557169564	81.502	1.6045	78.791	78.199	79.804	-2.7106					115	32	5	0	0	0	0.29717	1	6687	6687		63.306	4.5243	1	2410100	+		36601	28716	30163	30188	39972	39972					0.11784380896460789
LVLAAARVE	9	Unmodified	_LVLAAARVE_					0	0	0			REV__TMX2-CTNND1|2|fusion	REV__TMX2-CTNND1|2|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	471.29266357421875	2	471.292559	940.570566	0.33373	0.00015729	-0.47934	-0.00022591	-0.14561	-6.8623E-05	471.2921963660587	81.554	1.3417	79.906	79.514	80.856	-1.6485					81	25	4	0	0	0	0.30002	1	6924	6924		62.978	2.0065	1	678110	+		36602	23031	30164	30189	39973	39973					0.0979035068551184
LVLAEAMTI	9	Unmodified	_LVLAEAMTI_					0	0	0		tr|A0A553SF88|A0A553SF88_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_08460PE=3SV=1	tr|A0A553SF88|A0A553SF88_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_08460PE=3SV=1	tr|A0A553SF88|A0A553SF88_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_08460PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	481.2956237792969	2	480.775354	959.536154	-1.2186	-0.00058587	-1.1993	-0.00057659	-2.4179	-0.0011625	480.7741083899849	92.918	0.2403	90.956	90.79	91.03	-1.9617					8	4	2	0	0	0	0.027417	1	5900	5900		76.847	19.035	1	19365			36603	33007	30165	30190	39974	39974					0.05476766482399853
LVLAGVGFFI	10	Unmodified	_LVLAGVGFFI_					0	0	0		ENSG00000142627|ENST00000358432|EPHA2	ENSG00000142627|ENST00000358432|EPHA2	ENSG00000142627|ENST00000358432|EPHA2	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.318603515625	2	518.315503	1034.61645	1.2927	0.00067005	1.6545	0.00085753	2.9472	0.0015276	518.3163014324844	138.42	1.5254	136.89	136.44	137.96	-1.5284					73	32	3	0	0	0	0.65806	1	13549	13549		35.201	1.6851	1	110380			36604	4986	30166	30191	39975	39975					0.10052995867749814
LVLAIGYRAS	10	Unmodified	_LVLAIGYRAS_					0	0	0			REV__nc|ENSG00000124564|O00476|SLC17A3	REV__nc|ENSG00000124564|O00476|SLC17A3	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8185424804688	2	531.818941	1061.62333	0.089047	4.7357E-05	-3.7428	-0.0019905	-3.6538	-0.0019431	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.67931	1	13602	13602		32.812	3.6629	1	263230	+		36605	18693	30167	30192	39976	39976					0.09498308748334239
LVLAKPNKI	9	Unmodified	_LVLAKPNKI_					0	0	0			REV__tr|A0A7D6VSL8|A0A7D6VSL8_9CLOTATP-dependentRNAhelicaseDbpAOS=ClostridiumintestinaleOX=36845GN=dbpAPE=3SV=1	REV__tr|A0A7D6VSL8|A0A7D6VSL8_9CLOTATP-dependentRNAhelicaseDbpAOS=ClostridiumintestinaleOX=36845GN=dbpAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.33404541015625	2	498.334227	994.653902	0.034655	1.727E-05	-0.51496	-0.00025662	-0.48031	-0.00023935	498.3339335091273	123.54	3.2541	123.31	122.99	126.25	-0.23193					175	65	5	0	0	0	0.52083	1	12094	12094		40.573	1.7665	1	3004600	+		36606	31519	30168	30193	39977	39977					0.15636087133361798
LVLAKPNKI	9	Unmodified	_LVLAKPNKI_					0	0	0			REV__tr|A0A7D6VSL8|A0A7D6VSL8_9CLOTATP-dependentRNAhelicaseDbpAOS=ClostridiumintestinaleOX=36845GN=dbpAPE=3SV=1	REV__tr|A0A7D6VSL8|A0A7D6VSL8_9CLOTATP-dependentRNAhelicaseDbpAOS=ClostridiumintestinaleOX=36845GN=dbpAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3338317871094	2	498.334227	994.653902	1.2643	0.00063007	-1.8659	-0.00092985	-0.60157	-0.00029978	498.3332884380841	124.71	3.4398	123.66	123.27	126.71	-1.0519					179	65	5	0	0	0	0.32337	1	9688	9688		60.294	3.5729	1	3929400	+		36607	31519	30168	30193	39978	39978					0.15636087133361798
LVLAKVYLAF	10	Unmodified	_LVLAKVYLAF_					0	0	0		tr|A0A553SI59|A0A553SI59_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_14235PE=4SV=1	tr|A0A553SI59|A0A553SI59_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_14235PE=4SV=1	tr|A0A553SI59|A0A553SI59_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_14235PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	568.8533935546875	2	568.857535	1135.70052	-6.0827	-0.0034602	-1.2812	-0.00072885	-7.364	-0.0041891	568.856661515311	161.9	1.6548	160.28	159.93	161.59	-1.6239					133	43	5	0	0	0	0.65434	1	16024	16024		35.618	1.4457	1	804000			36608	33347	30169	30194	39979	39979					0.13809526964632823
LVLAPARK	8	Unmodified	_LVLAPARK_					0	0	0		MCAM|p.E308A|1|0.09|ENSG00000076706|chr11:119312367-119312367|T/G|missense_variant	MCAM|p.E308A|1|0.09|ENSG00000076706|chr11:119312367-119312367|T/G|missense_variant	MCAM|p.E308A|1|0.09|ENSG00000076706|chr11:119312367-119312367|T/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	434.291748046875	2	434.292362	866.570172	0.63845	0.00027727	0.96231	0.00041792	1.6008	0.0006952	434.2919816887499	123.38	1.4847	122.02	121.31	122.79	-1.3666					75	29	4	0	0	0	0.75915	1	11679	11679		20.482	2.1574	1	82753			36609	14823	30170	30195	39980	39980					0.13154975756310705
LVLCLATLL	9	Unmodified	_LVLCLATLL_					0	0	0			REV__ENSG00000165349|ENST00000374299|SLC7A3	REV__ENSG00000165349|ENST00000374299|SLC7A3	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.7752380371094	2	479.803914	957.593275	0.16744	8.0337E-05	4.0467	0.0019416	4.2142	0.002022	479.80570667357347	31.931	0.39695	31.931	31.757	32.154	0					12	7	3	0	0	0	0.027462	1	1368	1368		12.207	0	1	57452	+		36610	21081	30171	30196	39981	39981					0.11278233758787337
LVLCLDRVSF	10	Unmodified	_LVLCLDRVSF_					0	0	0			REV__CON__P02672	REV__CON__P02672	MULTI-SECPEP	OvCa9_classI_Rep2	2	582.7977294921875	2	582.825909	1163.63727	-0.63054	-0.00036749	-0.0087532	-5.1016E-06	-0.63929	-0.00037259	582.8257147219366	105.14	0.54334	104.71	104.46	105	-0.43642					16	10	2	0	0	0	0.026931	1	9751	9751		30.318	7.2752	1	20716	+	+	36611	16183	30172	30197	39982	39982					0.06199218185111022
LVLCTMLASL	10	Carbamidomethyl (C),Oxidation (M)	_LVLC(Carbamidomethyl (C))TM(Oxidation (M))LASL_	LVLC(1)TMLASL	LVLCTM(1)LASL	LVLC(56)TMLASL	LVLCTM(56)LASL	0	1	1			REV__chrX:118419411-118432781|190|10.3|0.42|4.6|+|1|TE_info:L1PB1,L1PB1_dup8380,L1,LINE,donor,-,118415804,118419411|None,WDR44|14	REV__chrX:118419411-118432781|190|10.3|0.42|4.6|+|1|TE_info:L1PB1,L1PB1_dup8380,L1,LINE,donor,-,118415804,118419411|None,WDR44|14	MULTI-MSMS	OvCa99_classI_Rep5	1	568.808837890625	2	568.806328	1135.5981	1.8124	0.0010309	3.541	0.0020141	5.3534	0.003045	568.8083349173353	125.69	1.8805	125.69	125.39	127.27	0					152	41	6	0	0	0	0.49049	1	14639	14639		55.504	6.0627	1	10570000	+		36612	16129	30173	30198	39983	39983	183	388			0.035727498392134294
LVLDLLVVQ	9	Unmodified	_LVLDLLVVQ_					0	0	0		ENST00000011619.5_1_6:13639860-13639896:-|nuORF	ENST00000011619.5_1_6:13639860-13639896:-|nuORF	ENST00000011619.5_1_6:13639860-13639896:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.8478088378906	2	506.326068	1010.63758	-0.73274	-0.000371	-2.0809	-0.0010536	-2.8136	-0.0014246	506.3247571344643	76.963	1.4521	74.091	73.804	75.256	-2.8727					91	29	6	0	0	0	0.027462	1	6167	6167		23.042	1.0826	1	929890			36613	9626	30174	30199	39984	39984					0.13268961176606808
LVLDQYFT	8	Unmodified	_LVLDQYFT_					0	0	0			REV__nc|ENSG00000131652|Q86W42-3|THOC6	REV__nc|ENSG00000131652|Q86W42-3|THOC6	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.765380859375	2	499.7633	997.512048	-1.053	-0.00052626	4.0977	0.0020479	3.0447	0.0015216	499.76572667649543	127.6	4.5409	126.16	125.39	129.93	-1.4357					197	90	5	0	0	0	0.6962	1	12350	12350		44.117	10.601	1	12586000	+		36614	28850	30175	30200	39985	39985					0.013192493203860067
LVLEGAGLRV	10	Unmodified	_LVLEGAGLRV_					0	0	0		ENSG00000135862|ENST00000258341|LAMC1;LAMC1|p.T1207Nfs*4|1|0.14|ENSG00000135862|chr1:183132451-183132452|-/A|frameshift_variant	ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.8107299804688	2	513.818941	1025.62333	0.24862	0.00012775	-0.76554	-0.00039335	-0.51692	-0.0002656	513.8181828505423	115.07	0.85445	113.67	113.46	114.32	-1.3977					30	16	2	0	0	0	0.026582	1	10712	10712		71.296	34.137	1	43526			36615	4424	30176	30201	39986	39986					0.11154308748336916
LVLEHVDQS	9	Unmodified	_LVLEHVDQS_					0	0	0			REV__ENSG00000101596|ENST00000320876|SMCHD1	REV__ENSG00000101596|ENST00000320876|SMCHD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.312255859375	2	520.274564	1038.53457	0.78644	0.00040916	-2.287	-0.0011898	-1.5005	-0.00078068	520.273639634277	79.257	0.35555	79.257	78.996	79.352	0					17	8	3	0	0	0	0.027462	1	8068	8068		35.618	5.1146	1	1271900	+		36616	17507	30177	30202	39987	39987					0.016848487179913718
LVLEKLTG	8	Unmodified	_LVLEKLTG_					0	0	0			REV__ENSG00000255009|ENST00000530464|UBTFL1	REV__ENSG00000255009|ENST00000530464|UBTFL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.7746276855469	2	436.776211	871.537869	-0.44072	-0.00019249	-2.8293	-0.0012358	-3.27	-0.0014283	436.7748691455194	144.87	2.2884	143.44	143.04	145.33	-1.4357					111	43	5	0	0	0	0.67745	1	14284	14284		47.916	7.343	1	1417100	+		36617	23522	30178	30203	39988	39988					0.0969614356265538
LVLELRPG	8	Unmodified	_LVLELRPG_					0	0	0		ENST00000316292.13_1_6:74230456-74230621:-|nuORF	ENST00000316292.13_1_6:74230456-74230621:-|nuORF	ENST00000316292.13_1_6:74230456-74230621:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	448.7828063964844	2	448.781828	895.549102	2.2551	0.0010121	0.28431	0.00012759	2.5394	0.0011397	448.7817410627789	91.315	0.69577	91.315	91.057	91.753	0					35	16	3	0	0	0	0.59148	1	9823	9823		65.803	0	1	1689900			36618	10342	30179	30204	39989	39989					0.09714965656814911
LVLELSRES	9	Unmodified	_LVLELSRES_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR;ENST00000504466.1_1_5:74645886-74647190:+|nuORF	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2909545898438	2	523.298039	1044.58152	-0.46689	-0.00024432	-4.2436	-0.0022206	-4.7104	-0.002465	523.2957176755683	46.845	0.70292	46.845	46.676	47.379	0					21	15	2	0	0	0	0.027462	1	3331	3331		10.866	3.1753	1	405350			36619	2951	30180	30205	39990	39990					0.06101708269147821
LVLEPPLLF	9	Unmodified	_LVLEPPLLF_					0	0	0			REV__nc|ENSG00000164867|P29474-3|NOS3	REV__nc|ENSG00000164867|P29474-3|NOS3	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.3123168945312	2	520.823161	1039.63177	1.4198	0.00073948	3.9166	0.0020399	5.3365	0.0027794	520.825316226058	79.687	0.15605	79.687	79.585	79.741	0					6	3	2	0	0	0	0.027462	1	8146	8146		33.516	4.366	1	792310	+		36620	21028	30181	30206	39991	39991					0.11353862664941516
LVLEPPLLF	9	Unmodified	_LVLEPPLLF_					0	0	0			REV__nc|ENSG00000164867|P29474-3|NOS3	REV__nc|ENSG00000164867|P29474-3|NOS3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3114013671875	2	520.823161	1039.63177	0.51298	0.00026717	1.6967	0.00088366	2.2096	0.0011508	520.8238428453717	84.57	0.23373	81.907	81.822	82.056	-2.6629					7	4	3	0	0	0	0.027462	1	7081	7081		40.573	5.3719	1	84937	+		36621	21028	30181	30206	39992	39992					0.11353862664941516
LVLFAMNSI	9	Unmodified	_LVLFAMNSI_					0	0	0			REV__ENSG00000204246|ENST00000641090|OR13C3	REV__ENSG00000204246|ENST00000641090|OR13C3	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.80670166015625	2	504.283346	1006.55214	-0.87782	-0.00044267	3.9259	0.0019798	3.0481	0.0015371	504.78665779586805	65.593	0.71393	65.593	65.231	65.945	0					38	17	3	0	0	0	0.027456	1	6071	6071		47.916	22.342	1	963360	+		36622	23136	30182	30207	39993	39993					0.049124727192975115
LVLFEINRL	9	Unmodified	_LVLFEINRL_					0	0	0			REV__tr|A0A7D6ZGI3|A0A7D6ZGI3_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22430PE=3SV=1	REV__tr|A0A7D6ZGI3|A0A7D6ZGI3_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22430PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	558.843505859375	2	558.842416	1115.67028	2.7255	0.0015231	-0.62874	-0.00035137	2.0967	0.0011717	558.8419246278343	80.502	1.4233	80.502	80.031	81.455	0					91	33	4	0	0	0	0.21231	1	8273	8273		74.255	2.3776	1	5439600	+		36623	32001	30183	30208	39994	39994					0.1170716829947196
LVLFFDNK	8	Unmodified	_LVLFFDNK_					0	0	0		nc|ENSG00000156983|P55201-3|BRPF1;nc|ENSG00000156983|P55201|BRPF1;ENSG00000156983|ENST00000383829|BRPF1;nc|ENSG00000156983|P55201-4|BRPF1;ENSG00000100425|ENST00000404760|BRD1;ENST00000479985.1_1_22:50169237-50169760:-|nuORF;nc|ENSG00000100425|O95696|BRD1;nc|ENSG00000096070|Q9ULD4-3|BRPF3;nc|ENSG00000096070|Q9ULD4-2|BRPF3;ENSG00000096070|ENST00000357641|BRPF3	nc|ENSG00000156983|P55201-3|BRPF1;ENSG00000100425|ENST00000404760|BRD1;nc|ENSG00000096070|Q9ULD4-3|BRPF3	nc|ENSG00000156983|P55201-3|BRPF1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.281494140625	2	498.28166	994.548768	0.43376	0.00021614	-0.53163	-0.0002649	-0.097869	-4.8766E-05	498.28127650436284	131.63	1.4224	131.41	131	132.42	-0.22697					82	28	4	0	0	0	0.59148	1	13003	13003		65.803	10.299	1	388250			36624	5868;2066;1944	30184	30209	39995	39995					0.05127545936943534
LVLFLLPSL	9	Unmodified	_LVLFLLPSL_					0	0	0			REV__ENST00000358290.8_1_4:88312286-88312331:-|nuORF	REV__ENST00000358290.8_1_4:88312286-88312331:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.3047180175781	2	507.833529	1013.6525	2.9879	0.0015174	-3.0547	-0.0015513	-0.066734	-3.389E-05	507.8302243072373	89.912	0.12864	89.912	89.848	89.977	0					4	2	2	0	0	0	0.027425	1	9629	9629		31.955	0	1	185560	+		36625	24797	30185	30210	39996	39996					0.14622453044626127
LVLFVYVFG	9	Unmodified	_LVLFVYVFG_					0	0	0			REV__tr|A0A553SHG2|A0A553SHG2_NIACIPolysaccharidebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_12860PE=4SV=1	REV__tr|A0A553SHG2|A0A553SHG2_NIACIPolysaccharidebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_12860PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.8103637695312	2	528.810054	1055.60555	-0.8076	-0.00042707	3.3197	0.0017555	2.5121	0.0013284	528.8115539121499	62.011	0.7179	58.553	58.244	58.962	-3.4577					31	14	3	0	0	0	0.027462	1	4313	4313		39.021	29.316	1	182810	+		36626	29799	30186	30211	39997	39997					0.07997593493473687
LVLFVYVFG	9	Unmodified	_LVLFVYVFG_					0	0	0			REV__tr|A0A553SHG2|A0A553SHG2_NIACIPolysaccharidebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_12860PE=4SV=1	REV__tr|A0A553SHG2|A0A553SHG2_NIACIPolysaccharidebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_12860PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.8094482421875	2	528.810054	1055.60555	-1.0806	-0.00057146	3.9892	0.0021095	2.9086	0.0015381	528.8118127723877	62.643	0.87632	59.185	58.913	59.789	-3.4577					28	17	2	0	0	0	0.027462	1	4333	4333		21.702	7.0382	1	90535	+		36627	29799	30186	30211	39998	39998					0.07997593493473687
LVLGAPPAS	9	Unmodified	_LVLGAPPAS_					0	0	0		ENST00000299954.13_1_17:65373938-65374277:+|nuORF	ENST00000299954.13_1_17:65373938-65374277:+|nuORF	ENST00000299954.13_1_17:65373938-65374277:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	412.74615478515625	2	412.747453	823.480354	0.89602	0.00036983	-3.8761	-0.0015999	-2.9801	-0.00123	412.745727074971	134.3	1.3763	134.07	133.07	134.44	-0.22697					63	27	4	0	0	0	0.57242	1	13311	13311		35.201	9.7505	1	259910			36628	10166	30187	30212	39999	39999					0.06155301357091503
LVLGAPPAS	9	Unmodified	_LVLGAPPAS_					0	0	0		ENST00000299954.13_1_17:65373938-65374277:+|nuORF	ENST00000299954.13_1_17:65373938-65374277:+|nuORF	ENST00000299954.13_1_17:65373938-65374277:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	412.74658203125	2	412.747453	823.480354	-0.0041108	-1.6967E-06	-3.0137	-0.0012439	-3.0178	-0.0012456	412.74611275073886	135.39	1.6252	134.28	133.62	135.24	-1.1076					83	32	4	0	0	0	0.59983	2	10946	10946;10989		31.955	7.7521	1	589310			36629	10166	30187	30212	40000;40001	40000					0.06155301357091503
LVLGARSLSDP	11	Unmodified	_LVLGARSLSDP_					0	0	0			REV__ENST00000526143.2_1_11:118795970-118796195:-|nuORF	REV__ENST00000526143.2_1_11:118795970-118796195:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	564.3234252929688	2	564.324588	1126.63462	-0.81585	-0.00046041	0.067324	3.7993E-05	-0.74853	-0.00042241	564.3246540994279	102.18	2.4595	100.66	100.27	102.73	-1.5211					131	46	5	0	0	0	0.064064	1	7030	7030		107.01	5.4068	1	5848300	+		36630	27131	30188	30213	40002	40002					0.07637086051818187
LVLGARVRR	9	Unmodified	_LVLGARVRR_					0	0	0			REV__ENST00000569739.1_1_16:2029285-2029615:-|nuORF	REV__ENST00000569739.1_1_16:2029285-2029615:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.3115844726562	2	520.345992	1038.67743	-0.88917	-0.00046267	-3.2291	-0.0016803	-4.1183	-0.0021429	520.3438888807004	84.316	0.77134	82.055	81.836	82.607	-2.261					30	15	3	0	0	0	0.027462	1	4924	4924		25.45	0	1	88572	+		36631	27727	30189	30214	40003	40003					0.15963945690555192
LVLGCAVQCE	10	Unmodified	_LVLGCAVQCE_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C;ENST00000553437.1_1_14:91808648-91875041:-|nuORF	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MSMS	OvCa9_classI_Rep3	3	517.7534790039062	2	517.754095	1033.49364	0.13224	6.8467E-05	-0.40276	-0.00020853	-0.27052	-0.00014006	517.7536919411586	99.533	2.2055	97.848	97.009	99.214	-1.685					97	43	4	0	0	0	0.33376	1	6697	6697		76.774	0	1	863100			36632	1000	30190	30215	40004	40004					-0.021769519174767993
LVLGLGVTT	9	Unmodified	_LVLGLGVTT_					0	0	0			REV__ENSG00000197496|ENST00000359271|SLC2A10	REV__ENSG00000197496|ENST00000359271|SLC2A10	MULTI-MSMS	OvCa9_classI_Rep2	2	436.7748107910156	2	436.776211	871.537869	-1.3218	-0.00057733	-1.7819	-0.0007783	-3.1037	-0.0013556	436.77534043072393	144.04	2.131	143.81	143.2	145.33	-0.22697					119	42	4	0	0	0	0.58665	1	14543	14543		33.516	8.0654	1	537180	+		36633	22930	30191	30216	40005	40005					0.09696143562666748
LVLGSMYIS	9	Oxidation (M)	_LVLGSM(Oxidation (M))YIS_		LVLGSM(1)YIS		LVLGSM(58)YIS	0	0	1		ENST00000377673.9_1_12:110906406-110906457:+|nuORF	ENST00000377673.9_1_12:110906406-110906457:+|nuORF	ENST00000377673.9_1_12:110906406-110906457:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.76513671875	2	499.764986	997.515419	-1.053	-0.00052626	0.72527	0.00036247	-0.32774	-0.00016379	499.76572667649543	127.6	4.5409	126.16	125.39	129.93	-1.4357					197	90	5	0	0	0	0.34496	1	12190	12190		57.811	6.4758	1	12586000			36634	11091	30192	30217	40006	40006		314			0.016561761027332977
LVLGVGQDM	9	Unmodified	_LVLGVGQDM_					0	0	0			REV__ENST00000570923.1_1_17:78185753-78194107:-|nuORF	REV__ENST00000570923.1_1_17:78185753-78194107:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.2647399902344	2	466.249503	930.484453	-1.1804	-0.00055038	-0.71318	-0.00033252	-1.8936	-0.0008829	466.24949938870327	95.345	0.60144	92.877	92.711	93.312	-2.4685					14	11	2	0	0	0	0.027462	1	8396	8396		31.955	0	1	15965	+		36635	22237	30193	30218	40007	40007					0.016430227884939086
LVLHILSLL	9	Unmodified	_LVLHILSLL_					0	0	0			REV__OR2A7|p.Q226Rfs*21|1|0.07|ENSG00000243896|chr7:144258953-144258953|G/-|frameshift_variant	REV__OR2A7|p.Q226Rfs*21|1|0.07|ENSG00000243896|chr7:144258953-144258953|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	510.843994140625	2	510.844428	1019.6743	0.099341	5.0748E-05	-0.6189	-0.00031616	-0.51956	-0.00026541	510.8440612216227	123.45	4.7392	123.21	122.74	127.48	-0.23193					211	95	5	0	0	0	0.36502	3	12047	12041;12047;12071		55.504	7.5886	1	2560200	+		36636	22184	30194	30219	40008;40009;40010	40009					0.1652525779318239
LVLHILSLL	9	Unmodified	_LVLHILSLL_					0	0	0			REV__OR2A7|p.Q226Rfs*21|1|0.07|ENSG00000243896|chr7:144258953-144258953|G/-|frameshift_variant	REV__OR2A7|p.Q226Rfs*21|1|0.07|ENSG00000243896|chr7:144258953-144258953|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	510.8438415527344	2	510.844428	1019.6743	1.4399	0.00073557	-1.9888	-0.001016	-0.54888	-0.00028039	510.84340100881786	124.3	4.2588	123.26	122.82	127.08	-1.0377					208	81	5	0	0	0	0.42057	1	9720	9720		50.025	2.1089	1	3150800	+		36637	22184	30194	30219	40011	40011					0.1652525779318239
LVLHTAILD	9	Unmodified	_LVLHTAILD_					0	0	0			REV__nc|ENSG00000158220|A0FGR9-2|ESYT3	REV__nc|ENSG00000158220|A0FGR9-2|ESYT3	MULTI-SECPEP	OvCa9_classI_Rep2	2	497.8290710449219	2	497.800217	993.585882	1.6131	0.00080299	-0.92917	-0.00046254	0.68391	0.00034045	497.7993354306531	88.097	1.0323	86.73	86.495	87.527	-1.3676					31	20	3	0	0	0	0.027462	1	7804	7804		24.203	0	1	36445	+		36638	20558	30195	30220	40012	40012					0.0888321748270755
LVLHTAKQS	9	Unmodified	_LVLHTAKQS_					0	0	0		chr14:53686608-53750002|240|11.0|0.0|20.07|-|0|LINC02331,LINC02331|2	chr14:53686608-53750002|240|11.0|0.0|20.07|-|0|LINC02331,LINC02331|2	chr14:53686608-53750002|240|11.0|0.0|20.07|-|0|LINC02331,LINC02331|2	MULTI-SECPEP	OvCa9_classI_Rep3	3	497.8307189941406	2	498.795466	995.57638	-0.78079	-0.00038945	0.18847	9.401E-05	-0.59231	-0.00029544	498.79544144901115	89.921	0.61529	87.841	87.644	88.259	-2.0805					18	11	2	0	0	0	0.027462	1	5592	5592		31.955	2.8053	1	31878			36639	348	30196	30221	40013	40013					0.07841449197189831
LVLIKSKRL	9	Unmodified	_LVLIKSKRL_					0	0	0			REV__ENSG00000023839|ENST00000647814|ABCC2	REV__ENSG00000023839|ENST00000647814|ABCC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.90771484375	2	535.376426	1068.7383	-0.99679	-0.00053366	0.83442	0.00044673	-0.16237	-8.6931E-05	535.3767881845314	22.13	0.60665	20.791	20.523	21.13	-1.3386					13	11	2	0	0	0	0.027462	1	274	274		17.365	5.1581	1	19139	+		36640	16561	30197	30222	40014	40014					0.20668037950122198
LVLILLHTV	9	Unmodified	_LVLILLHTV_					0	0	0		ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	MULTI-MSMS	OvCa9_classI_Rep2	2	510.8443908691406	2	510.844428	1019.6743	0.099341	5.0748E-05	-0.6189	-0.00031616	-0.51956	-0.00026541	510.8440612216227	123.45	4.7392	123.21	122.74	127.48	-0.23193					211	95	5	0	0	0	0.32337	1	11949	11949		60.294	4.7898	1	2560200			36641	8986	30198	30223	40015	40015					0.16525257793171022
LVLILLHTV	9	Unmodified	_LVLILLHTV_					0	0	0		ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	MULTI-MSMS	OvCa9_classI_Rep3	3	510.8437805175781	2	510.844428	1019.6743	1.4399	0.00073557	-1.9888	-0.001016	-0.54888	-0.00028039	510.84340100881786	124.3	4.2588	123.26	122.82	127.08	-1.0377					208	81	5	0	0	0	0.50066	1	9752	9752		42.474	1.9018	1	3150800			36642	8986	30198	30223	40016	40016					0.16525257793171022
LVLILLHTV	9	Unmodified	_LVLILLHTV_					0	0	0		ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.8433532714844	2	510.844428	1019.6743	-1.3602	-0.00069483	0.80064	0.000409	-0.55952	-0.00028583	510.84481256309454	124.63	4.041	123.24	122.82	126.86	-1.3908					202	79	5	0	0	0	0.58665	1	11973	11973		33.516	1.5607	1	3429700			36643	8986	30198	30223	40017	40017					0.16525257793171022
LVLINPMVI	9	Unmodified	_LVLINPMVI_					0	0	0			REV__nc|ENSG00000073060|Q8WTV0-4|SCARB1	REV__nc|ENSG00000073060|Q8WTV0-4|SCARB1	MULTI-MSMS	OvCa9_classI_Rep2	2	506.3182373046875	2	506.317189	1010.61982	-0.7007	-0.00035478	4.0833	0.0020675	3.3826	0.0017127	506.31921288144724	59.031	1.6985	56.251	55.74	57.438	-2.7801					106	32	5	0	0	0	0.22913	1	4293	4293		71.378	2.8932	1	1253400	+		36644	16930	30199	30224	40018	40018					0.11493922650117838
LVLIQVNTV	9	Unmodified	_LVLIQVNTV_					0	0	0			REV__nc|ENSG00000132932|Q9NTI2-3|ATP8A2	REV__nc|ENSG00000132932|Q9NTI2-3|ATP8A2	MULTI-SECPEP	OvCa9_classI_Rep2	2	499.7659606933594	2	499.815867	997.617182	0.39482	0.00019734	-4.4865	-0.0022424	-4.0917	-0.0020451	500.3151493178986	126.21	0.6393	125.97	125.85	126.49	-0.2359					17	12	2	0	0	0	0.027295	1	12315	12315		84.916	31.564	1	17428	+		36645	15679	30200	30225	40019	40019					0.11827790516792902
LVLIQVNTVKE	11	Unmodified	_LVLIQVNTVKE_					0	0	0			REV__nc|ENSG00000132932|Q9NTI2-3|ATP8A2	REV__nc|ENSG00000132932|Q9NTI2-3|ATP8A2	MSMS	OvCa9_classI_Rep4_	4	628.3817138671875	2	628.384645	1254.75474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	150.3	1	148.87	148.37	149.37	-1.4344								0	0	0	0.19474	1	14844	14844		29.17	2.4771	1		+		36646	15679	30201	30226	40020	40020					0.13755074325536043
LVLIYIIPI	9	Unmodified	_LVLIYIIPI_					0	0	0			REV__ENSG00000127995|ENST00000297273|CASD1;REV__CASD1|p.Y478Ffs*22|1|0.05|ENSG00000127995|chr7:94544486-94544487|-/TCATCCTTCACAAGAACCCTTCAAGGAAGGA|frameshift_variant	REV__ENSG00000127995|ENST00000297273|CASD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.30908203125	2	528.857004	1055.69945	2.3727	0.0012548	-4.4528	-0.0023549	-2.08	-0.0011	528.8545601047575	84.452	0.45441	84.452	84.261	84.716	0					18	10	2	0	0	0	0.027462	1	8842	8842		39.021	9.18	1	444610	+		36647	18836;15740	30202	30227	40021	40021					0.1738331259575716
LVLKGKGPAL	10	Unmodified	_LVLKGKGPAL_					0	0	0			REV__tr|A0A553SKA6|A0A553SKA6_NIACILonproteaseOS=NialliacirculansOX=1397GN=lonPE=2SV=1	REV__tr|A0A553SKA6|A0A553SKA6_NIACILonproteaseOS=NialliacirculansOX=1397GN=lonPE=2SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3338623046875	2	498.334227	994.653902	0.034655	1.727E-05	-0.51496	-0.00025662	-0.48031	-0.00023935	498.3339335091273	123.54	3.2541	123.31	122.99	126.25	-0.23193					175	65	5	0	0	0	0.59703	1	12052	12052		42.396	1.8235	1	3004600	+		36648	30101	30203	30228	40022	40022					0.15636087133384535
LVLKGKGPAL	10	Unmodified	_LVLKGKGPAL_					0	0	0			REV__tr|A0A553SKA6|A0A553SKA6_NIACILonproteaseOS=NialliacirculansOX=1397GN=lonPE=2SV=1	REV__tr|A0A553SKA6|A0A553SKA6_NIACILonproteaseOS=NialliacirculansOX=1397GN=lonPE=2SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3336181640625	2	498.334227	994.653902	-1.8174	-0.00090567	1.0953	0.00054583	-0.72208	-0.00035984	498.334772441205	125.12	4.2738	123.72	123.39	127.66	-1.3908					210	84	5	0	0	0	0.64063	1	12035	12035		37.159	0	1	4129000	+		36649	30101	30203	30228	40023	40023					0.15636087133384535
LVLLAAWR	8	Unmodified	_LVLLAAWR_					0	0	0			REV__nc|ENSG00000109689|Q9P246-2|STIM2	REV__nc|ENSG00000109689|Q9P246-2|STIM2	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.2991027832031	2	471.300188	940.585822	-0.3878	-0.00018277	-3.8835	-0.0018303	-4.2713	-0.0020131	471.29827272237475	43.675	1.4162	40.667	40.431	41.847	-3.0074					65	27	3	0	0	0	0.63104	1	2111	2111		57.453	2.5581	1	752870	+		36650	28792	30204	30229	40024	40024					0.11315262273365079
LVLLAAWR	8	Unmodified	_LVLLAAWR_					0	0	0			REV__nc|ENSG00000109689|Q9P246-2|STIM2	REV__nc|ENSG00000109689|Q9P246-2|STIM2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	471.300188	940.585822	0.43077	0.00020302	-4.6127	-0.002174	-4.1819	-0.0019709	471.29785719616075	43.495	1.3425	40.786	40.509	41.851	-2.7097	0.059171	-0.00041828	NaN	57.453	56	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180440	+		36651	28792	30204	30229							0.11315262273365079
LVLLAAWR	8	Unmodified	_LVLLAAWR_					0	0	0			REV__nc|ENSG00000109689|Q9P246-2|STIM2	REV__nc|ENSG00000109689|Q9P246-2|STIM2	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	471.300188	940.585822	-0.3878	-0.00018277	-3.8835	-0.0018303	-4.2713	-0.0020131	471.29827272237475	43.675	1.4162	40.667	40.431	41.847	-3.0074	-0.059171	0.00026906	NaN	57.453	65	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	752870	+		36652	28792	30204	30229							0.11315262273365079
LVLLAIYQF	9	Unmodified	_LVLLAIYQF_					0	0	0		L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|264|2|anti-sense	L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|264|2|anti-sense	L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|264|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3299560546875	2	540.328611	1078.64267	-0.85737	-0.00046326	3.4696	0.0018747	2.6122	0.0014115	540.3303552188828	135.53	0.83455	135.3	134.93	135.76	-0.22696					31	16	2	0	0	0	0.59983	1	13483	13483		31.955	2.8053	1	171450			36653	14676	30205	30230	40025	40025					0.1064926503922834
LVLLAPPPAV	10	Unmodified	_LVLLAPPPAV_					0	0	0		ENST00000262158.6_1_18:46476255-46476423:-|nuORF	ENST00000262158.6_1_18:46476255-46476423:-|nuORF	ENST00000262158.6_1_18:46476255-46476423:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	495.3222351074219	2	495.323328	988.632104	-0.33743	-0.00016714	0.094885	4.6999E-05	-0.24255	-0.00012014	495.32325174233563	104.47	2.4848	103.9	103.57	106.06	-0.57639					111	49	3	0	0	0	0.49566	1	9690	9690		54.765	8.8127	1	462520			36654	9884	30206	30231	40026	40026					0.13733282384794165
LVLLDELVD	9	Unmodified	_LVLLDELVD_					0	0	0			REV__nc|ENSG00000186191|P59827-2|BPIFB4	REV__nc|ENSG00000186191|P59827-2|BPIFB4	MULTI-SECPEP	OvCa9_classI_Rep2	2	514.7776489257812	2	514.79734	1027.58013	-0.058371	-3.0049E-05	3.9088	0.0020123	3.8505	0.0019822	514.7992446337564	73.27	1.6221	70.87	70.43	72.052	-2.3999					68	30	3	0	0	0	0.027433	1	5953	5953		38.806	6.8513	1	293390	+		36655	22566	30207	30232	40027	40027					0.0674407418039209
LVLLEDTDM	9	Oxidation (M)	_LVLLEDTDM(Oxidation (M))_		LVLLEDTDM(1)		LVLLEDTDM(41)	0	0	1		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.P12974Lfs*4|1|0.05|ENSG00000155657|chr2:178631204-178631205|-/GTACA|frameshift_variant;TTN|p.E11597Rfs*5|1|0.5|ENSG00000155657|chr2:178651954-178651954|A/-|frameshift_variant;TTN|p.R11195Efs*5|1|0.15|ENSG00000155657|chr2:178674318-178674318|A/-|frameshift_variant;TTN|p.E9011Nfs*14|1|0.03|ENSG00000155657|chr2:178711255-178711255|T/-|frameshift_variant;TTN|p.G8550Tfs*3|1|0.05|ENSG00000155657|chr2:178714032-178714059|ATTTGTTGTCACTTGTTAGCTCTTTTCC/-|frameshift_variant;TTN|p.S7694Qfs*32|1|0.04|ENSG00000155657|chr2:178719360-178719360|G/-|frameshift_variant;TTN|p.C7689Pfs*18|1|0.03|ENSG00000155657|chr2:178719373-178719374|CA/-|frameshift_variant;TTN|p.L7641Yfs*6|1|0.07|ENSG00000155657|chr2:178719621-178719621|T/-|frameshift_variant;TTN|p.T6904Lfs*6|1|0.08|ENSG00000155657|chr2:178723439-178723439|T/-|frameshift_variant;TTN|p.V5150Afs*3|1|0.06|ENSG00000155657|chr2:178732661-178732661|A/-|frameshift_variant;TTN|p.R4157*|1|0.07|ENSG00000155657|chr2:178739814-178739815|-/C|frameshift_variant;TTN|p.E3802Dfs*59|1|0.05|ENSG00000155657|chr2:178740876-178740877|-/GAAGTAACAAGGTACATGCACATGATGTG|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OvCa9_classI_Rep2	2	532.7623901367188	2	532.76264	1063.51073	-2.1706	-0.0011564	3.4235	0.0018239	1.2529	0.00066751	532.7642907529109	117.77	2.6251	117.62	115.46	118.08	-0.14755					92	52	3	0	0	0	0.52083	1	11274	11274		40.573	11.423	1	115690			36656	5793;36288	30208	30233	40028	40028		187			-0.018487528307105094
LVLLEDTDM	9	Oxidation (M)	_LVLLEDTDM(Oxidation (M))_		LVLLEDTDM(1)		LVLLEDTDM(60)	0	0	1		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.P12974Lfs*4|1|0.05|ENSG00000155657|chr2:178631204-178631205|-/GTACA|frameshift_variant;TTN|p.E11597Rfs*5|1|0.5|ENSG00000155657|chr2:178651954-178651954|A/-|frameshift_variant;TTN|p.R11195Efs*5|1|0.15|ENSG00000155657|chr2:178674318-178674318|A/-|frameshift_variant;TTN|p.E9011Nfs*14|1|0.03|ENSG00000155657|chr2:178711255-178711255|T/-|frameshift_variant;TTN|p.G8550Tfs*3|1|0.05|ENSG00000155657|chr2:178714032-178714059|ATTTGTTGTCACTTGTTAGCTCTTTTCC/-|frameshift_variant;TTN|p.S7694Qfs*32|1|0.04|ENSG00000155657|chr2:178719360-178719360|G/-|frameshift_variant;TTN|p.C7689Pfs*18|1|0.03|ENSG00000155657|chr2:178719373-178719374|CA/-|frameshift_variant;TTN|p.L7641Yfs*6|1|0.07|ENSG00000155657|chr2:178719621-178719621|T/-|frameshift_variant;TTN|p.T6904Lfs*6|1|0.08|ENSG00000155657|chr2:178723439-178723439|T/-|frameshift_variant;TTN|p.V5150Afs*3|1|0.06|ENSG00000155657|chr2:178732661-178732661|A/-|frameshift_variant;TTN|p.R4157*|1|0.07|ENSG00000155657|chr2:178739814-178739815|-/C|frameshift_variant;TTN|p.E3802Dfs*59|1|0.05|ENSG00000155657|chr2:178740876-178740877|-/GAAGTAACAAGGTACATGCACATGATGTG|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OvCa9_classI_Rep3	3	532.762939453125	2	532.76264	1063.51073	1.0391	0.00055361	-0.15917	-8.4802E-05	0.87995	0.0004688	532.7625453162051	119.44	1.5811	118.41	117.88	119.46	-1.0271					87	31	5	0	0	0	0.32337	1	9065	9065		60.294	7.9948	1	495830			36657	5793;36288	30208	30233	40029	40029		187			-0.018487528307105094
LVLLGNKYRA	10	Unmodified	_LVLLGNKYRA_					0	0	0			REV__ENST00000447136.1_2_7:2376880-2393874:-|nuORF	REV__ENST00000447136.1_2_7:2376880-2393874:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	573.8536987304688	2	573.853316	1145.69208	-0.47284	-0.00027134	-0.040269	-2.3109E-05	-0.51311	-0.00029445	573.853129437807	35.808	0.78124	35.808	35.429	36.211	0					42	16	4	0	0	0	0.53885	1	1843	1843		49.442	1.5259	1	394430	+		36658	25910	30209	30234	40030	40030					0.1250597304801886
LVLLHLEKN	9	Unmodified	_LVLLHLEKN_					0	0	0		ENSG00000174348|ENST00000312553|PODN;nc|ENSG00000174348|Q7Z5L7-2|PODN;nc|ENSG00000174348|Q7Z5L7-3|PODN;nc|ENSG00000174348|Q7Z5L7-4|PODN	ENSG00000174348|ENST00000312553|PODN	ENSG00000174348|ENST00000312553|PODN	MULTI-MSMS	OvCa9_classI_Rep3	3	539.8328247070312	2	539.834591	1077.65463	-3.6599	-0.0019758	-0.34525	-0.00018638	-4.0052	-0.0021621	539.8343147097894	149.81	1.4119	148.86	148.45	149.86	-0.9512					78	27	4	0	0	0	0.51865	1	12693	12693		40.778	10.275	1	160650			36659	7459	30210	30235	40031	40031					0.11890881782437646
LVLLHLEKN	9	Unmodified	_LVLLHLEKN_					0	0	0		ENSG00000174348|ENST00000312553|PODN;nc|ENSG00000174348|Q7Z5L7-2|PODN;nc|ENSG00000174348|Q7Z5L7-3|PODN;nc|ENSG00000174348|Q7Z5L7-4|PODN	ENSG00000174348|ENST00000312553|PODN	ENSG00000174348|ENST00000312553|PODN	MULTI-MSMS	OvCa9_classI_Rep4_	4	539.831787109375	2	539.834591	1077.65463	-3.4548	-0.001865	-0.69323	-0.00037423	-4.148	-0.0022393	539.8341906594819	150.18	1.502	148.75	148.37	149.88	-1.4344					84	33	4	0	0	0	0.51865	1	14840	14840		40.778	7.2626	1	222660			36660	7459	30210	30235	40032	40032					0.11890881782437646
LVLLILDAE	9	Unmodified	_LVLLILDAE_					0	0	0			REV__tr|A0A553SHM1|A0A553SHM1_NIACItRNAmodificationGTPaseMnmEOS=NialliacirculansOX=1397GN=mnmEPE=3SV=1	REV__tr|A0A553SHM1|A0A553SHM1_NIACItRNAmodificationGTPaseMnmEOS=NialliacirculansOX=1397GN=mnmEPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.7646484375	2	499.810251	997.605948	0.85084	0.00042526	2.4811	0.0012401	3.3319	0.0016653	500.31354733532237	127.34	0.25558	126.27	126.07	126.33	-1.0715					8	4	3	0	0	0	0.027456	1	9958	9958		47.916	8.8941	1	11479	+		36661	29818	30211	30236	40033	40033					0.10704968422658112
LVLLLLLA	8	Unmodified	_LVLLLLLA_					0	0	0			REV__ENST00000409418.8_1_11:72852940-72853132:-|nuORF	REV__ENST00000409418.8_1_11:72852940-72853132:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	434.28692626953125	2	434.317515	866.620476	-0.97628	-0.00042402	2.2682	0.00098514	1.292	0.00056112	434.31864547841116	84.448	0.46007	82.902	82.693	83.153	-1.5462					17	8	3	0	0	0	0.028476	1	7287	7287		16.705	0	1	19820	+		36662	19830	30212	30237	40034	40034					0.181830853614656
LVLLMLMFS	9	Unmodified	_LVLLMLMFS_					0	0	0			REV__ENSG00000163624|ENST00000295887|CDS1	REV__ENSG00000163624|ENST00000295887|CDS1	MULTI-MSMS	OvCa9_classI_Rep2	2	533.8040161132812	2	533.805599	1065.59665	-1.8776	-0.0010023	-1.8862	-0.0010068	-3.7638	-0.0020091	533.8045260164237	55.812	1.8344	53.008	52.432	54.266	-2.804					100	36	4	0	0	0	0.58665	1	3936	3936		33.516	1.9858	1	896000	+		36663	20862	30213	30238	40035	40035					0.06647160541115227
LVLLTVGVSAR	11	Unmodified	_LVLLTVGVSAR_					0	0	0		sp|P09712|US03_HCMVAMembraneglycoproteinUS3OS=Humancytomegalovirus(strainAD169)OX=10360GN=US3PE=2SV=1;sp|F5HEU0|US03_HCMVMMembraneglycoproteinUS3OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US3PE=2SV=1	sp|P09712|US03_HCMVAMembraneglycoproteinUS3OS=Humancytomegalovirus(strainAD169)OX=10360GN=US3PE=2SV=1	sp|P09712|US03_HCMVAMembraneglycoproteinUS3OS=Humancytomegalovirus(strainAD169)OX=10360GN=US3PE=2SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	564.8069458007812	2	564.360973	1126.70739	-0.8456	-0.00047723	-2.2995	-0.0012978	-3.1451	-0.001775	564.3594030198309	90.376	0.61433	88.296	88.056	88.67	-2.0805					16	11	2	0	0	0	0.025861	1	5642	5642		17.468	0	1	15113			36664	32869	30214	30239	40036	40036					0.14910839845242663
LVLMAVLYV	9	Unmodified	_LVLMAVLYV_					0	0	0		ENSG00000258839|ENST00000555147|MC1R	ENSG00000258839|ENST00000555147|MC1R	ENSG00000258839|ENST00000555147|MC1R	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.8119201660156	2	510.811739	1019.60893	1.1975	0.00061168	2.2274	0.0011378	3.4249	0.0017495	510.81271666238405	129.4	1.3345	127.95	127.5	128.83	-1.4565					56	26	3	0	0	0	0.42921	1	12421	12421		49.211	0	1	185240			36665	9483	30215	30240	40037	40037					0.09990520275823656
LVLMQSTRL	9	Unmodified	_LVLMQSTRL_					0	0	0		ENST00000547146.6_1_7:86813892-86824453:+|nuORF	ENST00000547146.6_1_7:86813892-86824453:+|nuORF	ENST00000547146.6_1_7:86813892-86824453:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.8111572265625	2	530.812802	1059.61105	1.2568	0.00066712	-0.85876	-0.00045584	0.39804	0.00021128	530.8121776672779	129.98	1.6761	128.5	128.12	129.79	-1.4779					73	33	3	0	0	0	0.31747	1	12456	12456		60.972	2.19	1	95871			36666	13546	30216	30241	40038	40038					0.08362949013621801
LVLNQYLLALP	11	Unmodified	_LVLNQYLLALP_					0	0	0			REV__tr|A0A7D6VNZ9|A0A7D6VNZ9_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20455PE=4SV=1	REV__tr|A0A7D6VNZ9|A0A7D6VNZ9_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20455PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	419.5903015136719	3	419.591946	1255.75401	2.2923	0.00096182	-4.4132	-0.0018517	-2.1209	-0.0008899	419.59002072493024	62.449	0.99136	59.415	59.172	60.163	-3.0339					42	19	3	0	0	0	0.71048	1	2261	2261		26.063	0.9374	1	53282	+		36667	31218	30217	30242	40039	40039					0.1363627967652974
LVLNQYLLALP	11	Unmodified	_LVLNQYLLALP_					0	0	0			REV__tr|A0A7D6VNZ9|A0A7D6VNZ9_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20455PE=4SV=1	REV__tr|A0A7D6VNZ9|A0A7D6VNZ9_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20455PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		3	419.591946	1255.75401	2.2923	0.00096182	-4.4132	-0.0018517	-2.1209	-0.0008899	419.59002072493024	62.449	0.99136	59.415	59.172	60.163	-3.0339	0.090371	-0.00033692	NaN	26.063	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53282	+		36668	31218	30217	30242							0.1363627967652974
LVLNQYLLALP	11	Unmodified	_LVLNQYLLALP_					0	0	0			REV__tr|A0A7D6VNZ9|A0A7D6VNZ9_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20455PE=4SV=1	REV__tr|A0A7D6VNZ9|A0A7D6VNZ9_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20455PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	419.591946	1255.75401	-0.77257	-0.00032416	-2.1728	-0.00091169	-2.9454	-0.0012359	419.59080667535903	62.692	1.0229	59.235	58.815	59.838	-3.4577	-0.090371	0.0024832	NaN	26.063	40	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29046	+		36669	31218	30217	30242							0.1363627967652974
LVLPALAGPE	10	Unmodified	_LVLPALAGPE_					0	0	0		ENST00000359359.6_3_6:36891854-36892064:+|nuORF	ENST00000359359.6_3_6:36891854-36892064:+|nuORF	ENST00000359359.6_3_6:36891854-36892064:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.2777099609375	2	490.294768	978.574983	-1.1731	-0.00057517	-0.79773	-0.00039112	-1.9708	-0.00096629	490.29430275851	104.54	0.59383	104.54	104.36	104.96	0					15	13	2	0	0	0	0.026982	1	11716	11716		16.473	0	1	154880			36670	10750	30218	30243	40040	40040					0.08483815108422732
LVLPCSPVE	9	Unmodified	_LVLPCSPVE_					0	0	0			REV__ENST00000464350.6_1_3:66406477-66420969:+|nuORF	REV__ENST00000464350.6_1_3:66406477-66420969:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	477.8094177246094	2	478.759704	955.504854	2.0097	0.00096214	4.4808	0.0021452	6.4905	0.0031074	478.76185353418475	125.55	0.31226	124.5	124.42	124.73	-1.0519					6	5	2	0	0	0	0.027462	1	9784	9784		15.642	0	1	6290.8	+		36671	26148	30219	30244	40041	40041					0.025321934483031328
LVLPEEAH	8	Unmodified	_LVLPEEAH_					0	0	0		nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1	nc|ENSG00000060237|Q9H4A3-5|WNK1	nc|ENSG00000060237|Q9H4A3-5|WNK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	455.2440490722656	2	454.247818	906.481082	0.3018	0.00013709	0.6499	0.00029522	0.9517	0.00043231	454.24793487833733	58.555	0.80266	55.163	54.852	55.655	-3.392					19	15	2	0	0	0	0.028476	1	3838	3838		39.021	15.979	1	33882			36672	14880	30220	30245	40042	40042					0.024100960061332444
LVLPFNMVF	9	Unmodified	_LVLPFNMVF_					0	0	0			REV__chrX:118419411-118432781|190|10.3|0.42|4.6|+|2|TE_info:L1PB1,L1PB1_dup8380,L1,LINE,donor,-,118415804,118419411|None,WDR44|44	REV__chrX:118419411-118432781|190|10.3|0.42|4.6|+|2|TE_info:L1PB1,L1PB1_dup8380,L1,LINE,donor,-,118415804,118419411|None,WDR44|44	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.8310546875	2	540.301539	1078.58852	2.0635	0.0011149	0.056142	3.0334E-05	2.1196	0.0011452	540.3013123861863	123.7	1.5509	122.66	122.36	123.91	-1.0377					61	29	4	0	0	0	0.027456	1	9652	9652		38.806	14.603	1	231980	+		36673	16131	30221	30246	40043	40043					0.052373496160271316
LVLPQPTG	8	Unmodified	_LVLPQPTG_					0	0	0			REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|304|2|anti-sense	REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|304|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	412.7461853027344	2	412.747453	823.480354	0.89602	0.00036983	-3.8761	-0.0015999	-2.9801	-0.00123	412.745727074971	134.3	1.3763	134.07	133.07	134.44	-0.22697					63	27	4	0	0	0	0.74971	2	13288	13288;13300		26.796	1.3459	1	259910	+		36674	28551	30222	30247	40044;40045	40044					0.061553013571028714
LVLPQPTG	8	Unmodified	_LVLPQPTG_					0	0	0			REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|304|2|anti-sense	REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|304|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	412.745849609375	2	412.747453	823.480354	-0.0041108	-1.6967E-06	-3.0137	-0.0012439	-3.0178	-0.0012456	412.74611275073886	135.39	1.6252	134.28	133.62	135.24	-1.1076					83	32	4	0	0	0	0.74971	1	10964	10964		26.796	0	1	589310	+		36675	28551	30222	30247	40046	40046					0.061553013571028714
LVLPSGPPSL	10	Unmodified	_LVLPSGPPSL_					0	0	0			REV__nc|ENSG00000151718|Q6AWC2-4|WWC2	REV__nc|ENSG00000151718|Q6AWC2-4|WWC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.71575927734375	2	490.294768	978.574983	-0.21149	-0.00010369	-0.018397	-9.0199E-06	-0.22989	-0.00011271	490.2946132453831	69.084	0.49147	69.084	68.815	69.307	0					25	11	3	0	0	0	0.026665	1	6524	6524		60.972	6.2073	1	636190	+		36676	20250	30223	30248	40047	40047					0.084838151084341
LVLPYVGKELN	11	Unmodified	_LVLPYVGKELN_					0	0	0		ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	ENSG00000124570|ENST00000380539|SERPINB6	MULTI-MSMS	OvCa9_classI_Rep3	3	622.8677368164062	2	622.866089	1243.71762	0.88915	0.00055382	-0.81681	-0.00050876	0.072344	4.5061E-05	622.8654000115959	131.71	1.5392	130.58	130.24	131.78	-1.1249					80	30	4	0	0	0	0.68263	1	10546	10546		35.618	4.0885	1	257180			36677	3659	30224	30249	40048	40048					0.10551402779810815
LVLQQLSL	8	Unmodified	_LVLQQLSL_					0	0	0			REV__ENST00000487088.5_1_9:5832547-5832913:-|nuORF	REV__ENST00000487088.5_1_9:5832547-5832913:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	457.290771484375	2	457.289485	912.564418	0.99148	0.00045339	1.428	0.000653	2.4195	0.0011064	457.28999347617025	141.89	2.9183	141.89	141.44	144.35	0					112	58	3	0	0	0	0.59148	1	16554	16554		65.803	4.8312	1	466050	+		36678	17314	30225	30250	40049	40049					0.10463832454001931
LVLQTFYD	8	Unmodified	_LVLQTFYD_					0	0	0			REV__ENSG00000125676|ENST00000245838|THOC2	REV__ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	OvCa9_classI_Rep2	2	499.76495361328125	2	499.7633	997.512048	0.42626	0.00021303	3.0681	0.0015333	3.4943	0.0017463	499.76512722989173	126.31	4.05	126.07	125.5	129.55	-0.2359					192	81	3	0	0	0	0.53531	1	12400	12400		73.975	5.1879	1	11682000	+		36679	18738	30226	30251	40050	40050					0.013192493203860067
LVLRDGDNN	9	Unmodified	_LVLRDGDNN_					0	0	0		CUBN|p.I2039L|1|0.07|ENSG00000107611|chr10:16933096-16933096|T/G|missense_variant	CUBN|p.I2039L|1|0.07|ENSG00000107611|chr10:16933096-16933096|T/G|missense_variant	CUBN|p.I2039L|1|0.07|ENSG00000107611|chr10:16933096-16933096|T/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.30279541015625	2	508.261988	1014.50942	-1.1174	-0.00056791	0.12817	6.5144E-05	-0.98918	-0.00050276	508.26564896774005	91.26	1.0616	89.236	88.675	89.737	-2.0241					44	18	4	0	0	0	0.027343	1	5702	5702		68.787	0	1	34417			36680	698	30227	30252	40051	40051					0.0027479391542328813
LVLREVLTL	9	Unmodified	_LVLREVLTL_					0	0	0		nc|ENSG00000163935|Q9UHJ3-2|SFMBT1;ENSG00000163935|ENST00000394752|SFMBT1	nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.3480224609375	2	528.344792	1054.67503	2.5925	0.0013697	-2.5988	-0.001373	-0.006247	-3.3006E-06	528.3433828644603	130.98	1.0893	129.51	129.21	130.3	-1.4779					50	22	3	0	0	0	0.31747	1	12567	12567		60.972	5.4677	1	98721			36681	6381	30228	30253	40052	40052					0.14988052442231492
LVLRFLQVE	9	Unmodified	_LVLRFLQVE_					0	0	0		ENSG00000158220|ENST00000389567|ESYT3;ENST00000486831.5_1_3:138189538-138191915:+|nuORF	ENSG00000158220|ENST00000389567|ESYT3	ENSG00000158220|ENST00000389567|ESYT3	MULTI-MSMS	OvCa99_classI_Rep5	1	558.8432006835938	2	558.842416	1115.67028	2.7255	0.0015231	-0.62874	-0.00035137	2.0967	0.0011717	558.8419246278343	80.502	1.4233	80.502	80.031	81.455	0					91	33	4	0	0	0	0.13482	1	8248	8248		87.754	0	1	5439600			36682	5938	30229	30254	40053	40053					0.1170716829947196
LVLRIAKT	8	Unmodified	_LVLRIAKT_					0	0	0			REV__CCR8|p.N232K|1|0.19|ENSG00000179934|chr3:39333027-39333027|C/G|missense_variant	REV__CCR8|p.N232K|1|0.19|ENSG00000179934|chr3:39333027-39333027|C/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.25390625	2	457.313295	912.612037	-0.41574	-0.00019012	0.51699	0.00023643	0.10125	4.6302E-05	457.3134630468876	41.556	0.34851	41.556	41.375	41.724	0					12	7	2	0	0	0	0.028476	1	2618	2618		17.365	3.5896	1	58289	+		36683	15757	30230	30255	40054	40054					0.1522353144483759
LVLRLQTGPV	10	Unmodified	_LVLRLQTGPV_					0	0	0		ENST00000402574.5_1_1:220825428-220826660:+|nuORF	ENST00000402574.5_1_1:220825428-220826660:+|nuORF	ENST00000402574.5_1_1:220825428-220826660:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	548.345947265625	2	548.347866	1094.68118	0.84752	0.00046473	-2.5027	-0.0013724	-1.6552	-0.00090764	548.34630473212	154.14	1.4394	154.14	153.78	155.22	0					75	28	4	0	0	0	0.62299	1	18090	18090		39.253	0	1	385030			36684	11434	30231	30256	40055	40055					0.13762570673748087
LVLRLVLRG	9	Unmodified	_LVLRLVLRG_					0	0	0		nc|ENSG00000124232|Q9UBG7-2|RBPJL;ENSG00000124232|ENST00000343694|RBPJL	nc|ENSG00000124232|Q9UBG7-2|RBPJL	nc|ENSG00000124232|Q9UBG7-2|RBPJL	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.8202514648438	2	519.860944	1037.70733	0.8682	0.00045135	-1.927	-0.0010018	-1.0588	-0.00055042	519.8604851211119	131.62	0.19727	131.39	131.25	131.45	-0.22696					5	3	2	0	0	0	0.027462	1	12969	12969		17.365	4.4058	1	12497			36685	3639	30232	30257	40056	40056					0.18998884635902868
LVLRPLTTLGT	11	Unmodified	_LVLRPLTTLGT_					0	0	0			REV__AluJo_dup70790|chr19:14488925-14489222:-|1.100240579763319|0.4898040708497028|1.17|429.0|18|1|anti-sense	REV__AluJo_dup70790|chr19:14488925-14489222:-|1.100240579763319|0.4898040708497028|1.17|429.0|18|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	592.3704833984375	2	592.374081	1182.73361	-4.4138	-0.0026146	1.0011	0.00059302	-3.4127	-0.0020216	592.3745667748314	155.34	1.3333	153.85	153.54	154.88	-1.4911					97	38	4	0	0	0	0.71498	1	15415	15415		24.519	3.5723	1	262760	+		36686	15597	30233	30258	40057	40057					0.149551090166824
LVLRPLVTL	9	Unmodified	_LVLRPLVTL_					0	0	0			REV__ENST00000515366.5_3_4:144298010-144301854:+|nuORF	REV__ENST00000515366.5_3_4:144298010-144301854:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	512.3512573242188	2	512.349877	1022.6852	1.4232	0.0007292	0.48878	0.00025043	1.912	0.00097962	512.3499940622985	130.62	0.7175	130.62	130.34	131.06	0					39	14	4	0	0	0	0.12515	1	15150	15150		90.37	10.919	1	809300	+		36687	26997	30234	30259	40058	40058					0.1747666016748326
LVLRPLVTL	9	Unmodified	_LVLRPLVTL_					0	0	0			REV__ENST00000515366.5_3_4:144298010-144301854:+|nuORF	REV__ENST00000515366.5_3_4:144298010-144301854:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.348876953125	2	512.349877	1022.6852	2.4987	0.0012802	-2.2934	-0.001175	0.20531	0.00010519	512.3485567813648	130.31	1.0325	128.83	128.66	129.69	-1.4779					38	20	3	0	0	0	0.63422	1	12505	12505		27.882	1.0861	1	32401	+		36688	26997	30234	30259	40059	40059					0.1747666016748326
LVLRTAGVVLG	11	Unmodified	_LVLRTAGVVLG_					0	0	0			REV__nc|ENSG00000154025|A0PJK1-5|SLC5A10	REV__nc|ENSG00000154025|A0PJK1-5|SLC5A10	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.2940063476562	2	549.355691	1096.69683	-0.49942	-0.00027436	0.46205	0.00025383	-0.037369	-2.0529E-05	549.3557964864515	58.937	0.62041	58.937	58.572	59.192	0					26	15	2	0	0	0	0.026099	1	5062	5062		14.137	0	1	335660	+		36689	20357	30235	30260	40060	40060					0.15234857190785078
LVLSFFGVISL	11	Unmodified	_LVLSFFGVISL_					0	0	0		tr|A0A553SRY9|A0A553SRY9_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_02050PE=4SV=1	tr|A0A553SRY9|A0A553SRY9_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_02050PE=4SV=1	tr|A0A553SRY9|A0A553SRY9_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_02050PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8563232421875	2	597.860275	1193.706	-3.1765	-0.0018991	-3.3266	-0.0019889	-6.5032	-0.003888	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.65947	1	14966	14966		39.253	4.0521	1	436470			36690	34312	30236	30261	40061	40061					0.11689205756488263
LVLSFFGVISL	11	Unmodified	_LVLSFFGVISL_					0	0	0		tr|A0A553SRY9|A0A553SRY9_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_02050PE=4SV=1	tr|A0A553SRY9|A0A553SRY9_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_02050PE=4SV=1	tr|A0A553SRY9|A0A553SRY9_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_02050PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	597.855224609375	2	597.860275	1193.706	-2.7036	-0.0016164	-3.9017	-0.0023327	-6.6053	-0.0039491	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.61983	1	12481	12481		42.864	8.6917	1	591030			36691	34312	30236	30261	40062	40062					0.11689205756488263
LVLSFFLVITS	11	Unmodified	_LVLSFFLVITS_					0	0	0		tr|A0A553SKV2|A0A553SKV2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_19345PE=4SV=1	tr|A0A553SKV2|A0A553SKV2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_19345PE=4SV=1	tr|A0A553SKV2|A0A553SKV2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_19345PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	619.869140625	2	619.873382	1237.73221	-3.8587	-0.0023919	-2.4761	-0.0015349	-6.3348	-0.0039268	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.72466	1	15423	15423		19.997	0.89325	1	492670			36692	33657	30237	30262	40063	40063					0.12285474927944051
LVLSGGVPRPQ	11	Unmodified	_LVLSGGVPRPQ_					0	0	0			REV__ENST00000470510.5_1_1:245912867-246021878:-|nuORF	REV__ENST00000470510.5_1_1:245912867-246021878:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	562.8150024414062	2	561.835123	1121.65569	0.73794	0.0004146	-1.1653	-0.00065472	-0.42738	-0.00024012	561.8345607972889	63.4	0.28878	59.925	59.772	60.061	-3.475					6	5	2	0	0	0	0.025681	1	4457	4457		34.173	16.808	1	14459	+		36693	26261	30238	30263	40064	40064					0.09973096151315985
LVLSLRDKPV	10	Unmodified	_LVLSLRDKPV_					0	0	0			REV__nc|ENSG00000163814|Q9H5V8-2|CDCP1	REV__nc|ENSG00000163814|Q9H5V8-2|CDCP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	570.3598022460938	2	570.360973	1138.70739	-3.6448	-0.0020789	-0.079296	-4.5227E-05	-3.7241	-0.0021241	570.3607585251723	152.95	1.1827	151.52	151.24	152.42	-1.435					78	29	4	0	0	0	0.73378	1	15139	15139		26.693	7.5894	1	189880	+		36694	20895	30239	30264	40065	40065					0.14358839845203875
LVLSNTIKN	9	Unmodified	_LVLSNTIKN_					0	0	0			REV__nc|ENSG00000109618|Q9HD40-3|SEPSECS	REV__nc|ENSG00000109618|Q9HD40-3|SEPSECS	MULTI-MSMS	OvCa9_classI_Rep2	2	501.301025390625	2	501.303124	1000.5917	-1.3993	-0.00070149	1.2603	0.0006318	-0.13901	-6.9684E-05	501.30362374390734	103.02	2.0272	102.33	102.03	104.06	-0.68459					86	40	4	0	0	0	0.21231	1	9498	9498		74.255	7.8258	1	287300	+		36695	28791	30240	30265	40066	40066					0.09142315994370165
LVLSRNCH	8	Carbamidomethyl (C)	_LVLSRNC(Carbamidomethyl (C))H_	LVLSRNC(1)H		LVLSRNC(66)H		0	1	0		HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|172|3|sense	HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|172|3|sense	HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|172|3|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	499.7643737792969	2	499.763643	997.512734	0.8461	0.00042285	1.8317	0.0009154	2.6778	0.0013382	499.7649286167221	127.27	5.5139	126.2	124.35	129.86	-1.0715					229	108	5	0	0	0	0.59148	1	9946	9946		65.803	9.0821	1	11725000			36696	14425	30241	30266	40067	40067	162				0.013877654884481672
LVLTEAVGEEL	11	Unmodified	_LVLTEAVGEEL_					0	0	0			REV__nc|ENSG00000112655|Q13308-3|PTK7	REV__nc|ENSG00000112655|Q13308-3|PTK7	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.8242797851562	2	586.824086	1171.63362	-2.8595	-0.001678	2.1869	0.0012833	-0.67262	-0.00039471	586.8252260558515	149.49	1.5706	148.05	147.61	149.18	-1.4344					87	31	4	0	0	0	0.69081	1	14754	14754		32.812	0.85756	1	272440	+		36697	16081	30242	30267	40068	40068					0.05466826892256904
LVLTGDSDLA	10	Unmodified	_LVLTGDSDLA_					0	0	0			REV__ENSG00000077348|ENST00000221233|EXOSC5	REV__ENSG00000077348|ENST00000221233|EXOSC5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.7890319824219	2	502.268947	1002.52334	-0.98787	-0.00049618	4.1528	0.0020858	3.1649	0.0015896	502.7731838749433	55.886	0.55631	52.592	52.464	53.02	-3.2944					13	10	2	0	0	0	0.026915	1	3568	3568		35.618	21.843	1	35096	+		36698	17011	30243	30268	40069	40069					0.022180266238592594
LVLTGDSDLA	10	Unmodified	_LVLTGDSDLA_					0	0	0			REV__ENSG00000077348|ENST00000221233|EXOSC5	REV__ENSG00000077348|ENST00000221233|EXOSC5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	502.268947	1002.52334	-1.5676	-0.00078735	4.0472	0.0020328	2.4796	0.0012454	502.2697419447416	55.565	0.24802	52.761	52.582	52.83	-2.804	0.084593	-6.7738E-05	NaN	27.882	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5163.9	+		36699	17011	30243	30268							0.022180266238592594
LVLTGFSHIDL	11	Unmodified	_LVLTGFSHIDL_					0	0	0		ENST00000592841.5_1_19:34919394-34922879:+|nuORF;UBA2-GPI|1|fusion;UBA2-GPI|2|fusion;ENSG00000126261|ENST00000246548|UBA2	ENST00000592841.5_1_19:34919394-34922879:+|nuORF	ENST00000592841.5_1_19:34919394-34922879:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	607.843994140625	2	607.842613	1213.67067	1.5761	0.00095803	0.33121	0.00020132	1.9073	0.0011594	607.8428630154392	130.8	0.57361	130.8	130.53	131.1	0					27	11	3	0	0	0	0.20195	1	15184	15184		79.713	21.466	1	246590			36700	14141	30244	30269	40070	40070					0.0723854322866373
LVLTILFDFL	10	Unmodified	_LVLTILFDFL_					0	0	0		tr|A0A7D6VR24|A0A7D6VR24_9CLOTDUF4173domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00800PE=4SV=1	tr|A0A7D6VR24|A0A7D6VR24_9CLOTDUF4173domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00800PE=4SV=1	tr|A0A7D6VR24|A0A7D6VR24_9CLOTDUF4173domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00800PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.8353881835938	2	597.36265	1192.71075	2.0072	0.001199	-3.5705	-0.0021329	-1.5633	-0.00093386	597.3603494351622	117.35	0.84037	117.35	116.95	117.79	0					20	17	2	0	0	0	0.026523	1	13453	13453		68.787	7.8149	1	273950			36701	34887	30245	30270	40071	40071					0.12210089899235754
LVLTKRNF	8	Unmodified	_LVLTKRNF_					0	0	0			REV__MPP1|p.K281N|1|0.26|ENSG00000130830|chrX:154784050-154784050|C/G|missense_variant	REV__MPP1|p.K281N|1|0.26|ENSG00000130830|chrX:154784050-154784050|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	495.80621337890625	2	495.808377	989.6022	-1.6284	-0.00080736	-2.787	-0.0013818	-4.4154	-0.0021892	495.8069614829561	143.45	1.4815	143.22	142.7	144.19	-0.22696					60	29	3	0	0	0	0.75661	1	14421	14421		19.36	2.8868	1	72131	+		36702	28678	30246	30271	40072	40072					0.10698343439457858
LVLTPPVILG	10	Unmodified	_LVLTPPVILG_					0	0	0		nc|ENSG00000148357|Q8NDA2-4|HMCN2;nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-MSMS	OvCa9_classI_Rep3	3	511.3353576660156	2	511.336436	1020.65832	1.2132	0.00062035	-1.4172	-0.00072469	-0.20405	-0.00010434	511.33557175390297	127.02	1.4474	125.94	125.6	127.05	-1.0715					62	27	4	0	0	0	0.55145	1	9942	9942		47.916	1.9636	1	200840			36703	5404	30247	30272	40073	40073					0.1488155155628874
LVLTVEHK	8	Unmodified	_LVLTVEHK_					0	0	0		nc|ENSG00000197181|Q8TC59-2|PIWIL2;ENSG00000197181|ENST00000356766|PIWIL2;PPP3CC-PIWIL2|1|fusion	nc|ENSG00000197181|Q8TC59-2|PIWIL2	nc|ENSG00000197181|Q8TC59-2|PIWIL2	MULTI-MSMS	OvCa9_classI_Rep4_	4	469.7882385253906	2	469.78711	937.559667	0.43289	0.00020337	-0.17193	-8.0769E-05	0.26096	0.0001226	469.78669584350985	57.924	1.3093	54.579	54.291	55.6	-3.3449					59	25	4	0	0	0	0.64026	1	3791	3791		55.504	6.0627	1	325790			36704	8687	30248	30273	40074	40074					0.08838948311222339
LVLTVEHK	8	Unmodified	_LVLTVEHK_					0	0	0		nc|ENSG00000197181|Q8TC59-2|PIWIL2;ENSG00000197181|ENST00000356766|PIWIL2;PPP3CC-PIWIL2|1|fusion	nc|ENSG00000197181|Q8TC59-2|PIWIL2	nc|ENSG00000197181|Q8TC59-2|PIWIL2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	469.78711	937.559667	-0.70483	-0.00033112	1.1707	0.00055	0.46592	0.00021888	469.7874451434838	57.474	1.2442	54.682	54.129	55.373	-2.792	0.051551	0.0010203	NaN	55.504	42	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47019			36705	8687	30248	30273							0.08838948311222339
LVLVAASLSI	10	Unmodified	_LVLVAASLSI_					0	0	0			REV__tr|A0A7D6VSX7|A0A7D6VSX7_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06930PE=3SV=1	REV__tr|A0A7D6VSX7|A0A7D6VSX7_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06930PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.81573486328125	2	493.318243	984.621933	-0.195	-9.6199E-05	0.73776	0.00036395	0.54276	0.00026775	493.31854664133635	109.8	2.0768	108.66	108.03	110.11	-1.1444					49	39	2	0	0	0	0.026802	1	8017	8017		34.173	6.2903	1	22509	+		36706	31552	30249	30274	40075	40075					0.12900674659567812
LVLVAASLSI	10	Unmodified	_LVLVAASLSI_					0	0	0			REV__tr|A0A7D6VSX7|A0A7D6VSX7_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06930PE=3SV=1	REV__tr|A0A7D6VSX7|A0A7D6VSX7_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06930PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	493.318243	984.621933	1.0025	0.00049457	-0.77489	-0.00038227	0.22765	0.00011231	493.31775742584773	110.35	1.5269	108.74	107.96	109.49	-1.6011	0.095583	-0.0008593	NaN	49.442	43	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19371	+		36707	31552	30249	30274							0.12900674659567812
LVLVESMFD	9	Unmodified	_LVLVESMFD_					0	0	0			REV__tr|A0A7D6VQQ9|A0A7D6VQQ9_9CLOTtRNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15985PE=4SV=1	REV__tr|A0A7D6VQQ9|A0A7D6VQQ9_9CLOTtRNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15985PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	526.7720336914062	2	526.770268	1051.52598	0.53416	0.00028138	2.1837	0.0011503	2.7178	0.0014317	526.7712273408915	151.81	1.3029	151.81	151.25	152.55	0					61	27	4	0	0	0	0.44294	1	17755	17755		47.916	7.343	1	373300	+		36708	31348	30250	30275	40076	40076					0.00228158757181518
LVLVIDVENPK	11	Unmodified	_LVLVIDVENPK_					0	0	0		ENST00000248594.10_1_7:77267997-77268610:+|nuORF	ENST00000248594.10_1_7:77267997-77268610:+|nuORF	ENST00000248594.10_1_7:77267997-77268610:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8716430664062	2	619.871371	1237.72819	-3.8587	-0.0023919	0.76872	0.00047651	-3.09	-0.0019154	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.72473	1	15593	15593		19.104	2.6304	1	492670			36709	9785	30251	30276	40077	40077					0.11883385434202864
LVLVLNTQP	9	Unmodified	_LVLVLNTQP_					0	0	0		ENSG00000175595|ENST00000311895|ERCC4;ENST00000576348.1_1_16:14014055-14020614:+|nuORF;nc|ENSG00000175595|Q92889-2|ERCC4;ERCC4|p.Y577*|1|0.08|ENSG00000175595|chr16:13935663-13935663|C/-|frameshift_variant	ENSG00000175595|ENST00000311895|ERCC4	ENSG00000175595|ENST00000311895|ERCC4	MULTI-SECPEP	OvCa9_classI_Rep2	2	499.78643798828125	2	498.808042	995.601532	-1.54	-0.00076815	1.2901	0.0006435	-0.24991	-0.00012466	498.8085837243357	118.31	0.64532	118.16	117.64	118.28	-0.14755					16	12	2	0	0	0	0.027462	1	11292	11292		26.693	0	1	9337.1			36710	7555	30252	30277	40078	40078					0.1035550399976728
LVLVQGTSLI	10	Unmodified	_LVLVQGTSLI_					0	0	0		XPO1-USP34|2|fusion;USP34|p.K3306Nfs*3|1|0.18|ENSG00000115464|chr2:61189025-61189025|T/-|frameshift_variant;nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;XPO1-USP34|3|fusion	XPO1-USP34|2|fusion	XPO1-USP34|2|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.8112182617188	2	521.828975	1041.6434	-0.88466	-0.00046164	4.2088	0.0021963	3.3241	0.0017346	522.332180319267	67.923	0.63914	65.262	65.139	65.779	-2.661					21	12	3	0	0	0	0.026891	1	5331	5331		39.253	12.56	1	29754			36711	36309	30253	30278	40079	40079					0.12424059688305533
LVLVSTGFPS	10	Unmodified	_LVLVSTGFPS_					0	0	0		ENST00000368457.2_1_1:154931107-154931215:-|nuORF	ENST00000368457.2_1_1:154931107-154931215:-|nuORF	ENST00000368457.2_1_1:154931107-154931215:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	510.293212890625	2	510.292225	1018.5699	-0.10295	-5.2533E-05	-0.35586	-0.00018159	-0.45881	-0.00023413	510.29192022253056	78.974	1.4952	76.634	76.264	77.759	-2.3399					95	29	5	0	0	0	0.59703	1	4255	4255		42.396	0	1	970550			36712	10871	30254	30279	40080	40080					0.061355112458159056
LVLVTAINP	9	Unmodified	_LVLVTAINP_					0	0	0		tr|A0A7D6VS54|A0A7D6VS54_9CLOTFormate--tetrahydrofolateligaseOS=ClostridiumintestinaleOX=36845GN=fhsPE=3SV=1	tr|A0A7D6VS54|A0A7D6VS54_9CLOTFormate--tetrahydrofolateligaseOS=ClostridiumintestinaleOX=36845GN=fhsPE=3SV=1	tr|A0A7D6VS54|A0A7D6VS54_9CLOTFormate--tetrahydrofolateligaseOS=ClostridiumintestinaleOX=36845GN=fhsPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	470.295654296875	2	470.29731	938.580068	-0.49251	-0.00023162	-2.9033	-0.0013654	-3.3958	-0.001597	470.29591238963496	32.315	1.7376	29.606	29.382	31.119	-2.7097					90	34	5	0	0	0	0.68424	1	1083	1083		21.96	0	1	1326000			36713	34989	30255	30280	40081	40081					0.1083211897101819
LVLVWVKKP	9	Unmodified	_LVLVWVKKP_					0	0	0			REV__ENST00000494513.1_1_6:160148641-160157384:+|nuORF	REV__ENST00000494513.1_1_6:160148641-160157384:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	540.8313598632812	2	541.360245	1080.70594	-0.48115	-0.00026047	1.3679	0.00074053	0.88675	0.00048005	541.3611842450645	123.5	0.34311	123.26	123.04	123.39	-0.23193					9	6	2	0	0	0	0.027462	1	11997	11997		25.45	12.491	1	16674	+		36714	26728	30256	30281	40082	40082					0.16881250547135096
LVLWFLYRFV	10	Unmodified	_LVLWFLYRFV_					0	0	0			REV__ENSG00000103335|ENST00000301015|PIEZO1	REV__ENSG00000103335|ENST00000301015|PIEZO1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.7450866699219	3	452.600665	1354.78016	0.69927	0.00031649	-0.27837	-0.00012599	0.4209	0.0001905	452.6012127211358	57.649	0.96633	54.304	53.832	54.799	-3.3449					34	18	3	0	0	0	0.02717	1	3807	3807		23.523	6.9928	1	56664	+		36715	17612	30257	30282	40083	40083					0.11696593638635022
LVMAALSKSI	10	Unmodified	_LVMAALSKSI_					0	0	0		ENST00000532959.5_1_11:86749009-87006862:+|nuORF;ENST00000529023.5_1_11:86749009-86868454:+|nuORF	ENST00000532959.5_1_11:86749009-87006862:+|nuORF	ENST00000532959.5_1_11:86749009-87006862:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.3042602539062	2	516.809728	1031.6049	2.0922	0.0010813	4.3958	0.0022718	6.488	0.003353	516.8122173211418	124.59	0.67695	123.54	123.33	124	-1.0519					19	12	3	0	0	0	0.026606	1	9710	9710		52.937	5.2794	1	26096			36716	13267	30258	30283	40084	40084					0.09036430782111893
LVMAALSKSI	10	Unmodified	_LVMAALSKSI_					0	0	0		ENST00000532959.5_1_11:86749009-87006862:+|nuORF;ENST00000529023.5_1_11:86749009-86868454:+|nuORF	ENST00000532959.5_1_11:86749009-87006862:+|nuORF	ENST00000532959.5_1_11:86749009-87006862:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	516.809728	1031.6049	0.32865	0.00016985	5.3141	0.0027464	5.6427	0.0029162	516.813244946506	123.53	0.73772	123.29	123.09	123.83	-0.23193	-0.12191	0.00060903	NaN	62.107	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19633			36717	13267	30258	30283							0.09036430782111893
LVMAPRTVL	9	Oxidation (M)	_LVM(Oxidation (M))APRTVL_		LVM(1)APRTVL		LVM(90)APRTVL	0	0	1		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep2	2	508.30181884765625	2	508.30207	1014.58959	0.17446	8.8677E-05	-0.8286	-0.00042118	-0.65415	-0.0003325	508.3016033253037	81.716	3.6233	80.067	78.915	82.538	-1.6485					135	71	4	0	0	0	0.12515	5	6940	6923;6934;6940;6958;6983		90.37	27.064	1	1275400			36718	9301	30259	30284	40085;40086;40087;40088;40089	40087		278			0.08287563984902135
LVMAPRTVL	9	Oxidation (M)	_LVM(Oxidation (M))APRTVL_		LVM(1)APRTVL		LVM(120)APRTVL	0	0	1		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep3	3	508.302734375	2	508.30207	1014.58959	-1.2179	-0.00061906	0.49292	0.00025055	-0.72497	-0.0003685	508.30222432035663	82.41	2.3047	80.114	79.182	81.487	-2.2963					153	46	5	0	0	0	0.053172	6	4644	4607;4614;4621;4627;4644;4663		116.9	34.599	1	1883000			36719	9301	30259	30284	40090;40091;40092;40093;40094;40095	40094		278			0.08287563984902135
LVMAPRTVL	9	Oxidation (M)	_LVM(Oxidation (M))APRTVL_		LVM(1)APRTVL		LVM(93)APRTVL	0	0	1		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.3031311035156	2	508.30207	1014.58959	-0.76419	-0.00038844	0.16789	8.5337E-05	-0.5963	-0.0003031	508.30206007936306	82.679	2.0447	79.996	79.298	81.343	-2.6829					138	41	5	0	0	0	0.11471	3	6805	6805;6841;6853		93.195	27.392	1	2020600			36720	9301	30259	30284	40096;40097;40098	40096		278			0.08287563984902135
LVMAPRTVL	9	Unmodified	_LVMAPRTVL_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep2	2	500.3039855957031	2	500.304613	998.594672	-0.60307	-0.00030172	0.014568	7.2885E-06	-0.5885	-0.00029443	500.3045681460816	93.714	1.8288	92.615	91.973	93.802	-1.0995					109	35	5	0	0	0	0.074342	3	8388	8369;8374;8388		104.75	27.972	1	1396500			36721	9301	30259	30285	40099;40100;40101	40101					0.09531867847522335
LVMAPRTVL	9	Unmodified	_LVMAPRTVL_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep3	3	500.3051452636719	2	500.304613	998.594672	-0.90168	-0.00045111	0.54047	0.0002704	-0.3612	-0.00018071	500.3048332508997	94.515	2.0099	92.62	91.95	93.96	-1.8956					112	39	4	0	0	0	0.074342	4	6103	6103;6108;6115;6121		104.75	22.15	1	1694700			36722	9301	30259	30285	40102;40103;40104;40105	40102					0.09531867847522335
LVMAPRTVL	9	Unmodified	_LVMAPRTVL_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.3053283691406	2	500.304613	998.594672	-1.2707	-0.00063576	0.79571	0.0003981	-0.47503	-0.00023766	500.3049565512737	95.101	2.0112	92.633	91.91	93.921	-2.4685					120	39	4	0	0	0	0.1804	4	8356	8342;8356;8368;8380		79.713	10.926	1	1722100			36723	9301	30259	30285	40106;40107;40108;40109	40107					0.09531867847522335
LVMCGAGQAVI	11	Unmodified	_LVMCGAGQAVI_					0	0	0			REV__tr|A0A553SR88|A0A553SR88_NIACIROKfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00435PE=3SV=1	REV__tr|A0A553SR88|A0A553SR88_NIACIROKfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00435PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	531.2767333984375	2	531.277738	1060.54092	-2.2318	-0.0011857	0.70795	0.00037612	-1.5239	-0.00080961	531.277969370088	85.666	2.2081	84.175	82.801	85.009	-1.4906					97	43	3	0	0	0	0.43234	1	7427	7427		58.782	0	1	628520	+		36724	30704	30260	30286	40110	40110					0.01307327353515575
LVMEDQHN	8	Unmodified	_LVMEDQHN_					0	0	0		ENSG00000144395|ENST00000389175|CCDC150;nc|ENSG00000144395|Q8NCX0-4|CCDC150;ENST00000463826.5_1_2:197584220-197590826:+|nuORF;nc|ENSG00000144395|Q8NCX0-3|CCDC150;ENST00000494389.5_1_2:197559796-197594150:+|nuORF;nc|ENSG00000144395|Q8NCX0-2|CCDC150	ENSG00000144395|ENST00000389175|CCDC150	ENSG00000144395|ENST00000389175|CCDC150	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3246154785156	2	493.224017	984.43348	-0.1484	-7.3194E-05	1.4126	0.00069673	1.2642	0.00062353	493.2246411432739	80.215	0.86207	77.875	77.612	78.474	-2.3399					31	16	3	0	0	0	0.028476	1	4376	4376		88.643	0.94643	1	50032			36725	5148	30261	30287	40111	40111					-0.059359262563589255
LVMGKKAL	8	Unmodified	_LVMGKKAL_					0	0	0		ENST00000498474.2_1_X:7003468-7066154:-|nuORF;nc|ENSG00000130021|Q08623-3|PUDP;ENSG00000130021|ENST00000381077|PUDP;nc|ENSG00000130021|Q08623-4|PUDP	ENST00000498474.2_1_X:7003468-7066154:-|nuORF	ENST00000498474.2_1_X:7003468-7066154:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	430.2731628417969	2	430.275324	858.536095	-0.29705	-0.00012782	-3.5681	-0.0015353	-3.8652	-0.0016631	430.27363198332677	107.54	1.9628	107.24	106.57	108.54	-0.30836					111	39	5	0	0	0	0.69415	1	10031	10031		44.531	0.90502	1	399440			36726	12825	30262	30288	40112	40112					0.10116811273042003
LVMGQGVGAL	10	Unmodified	_LVMGQGVGAL_					0	0	0			REV__tr|A0A553STZ1|A0A553STZ1_NIACIPTSglucosetransportersubunitIIBOS=NialliacirculansOX=1397GN=CEQ21_05900PE=4SV=1	REV__tr|A0A553STZ1|A0A553STZ1_NIACIPTSglucosetransportersubunitIIBOS=NialliacirculansOX=1397GN=CEQ21_05900PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.2774658203125	2	472.76532	943.516088	2.1519	0.0010173	-3.4356	-0.0016242	-1.2837	-0.00060688	472.7634795214511	82.857	1.3226	82.857	82.181	83.504	0					64	30	3	0	0	0	0.026519	1	8652	8652		76.847	39.688	1	771210	+		36727	31026	30263	30289	40113	40113					0.042070155424539735
LVMHNVSTF	9	Unmodified	_LVMHNVSTF_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.2695922851562	2	524.268227	1046.5219	-1.209	-0.00063385	0.96797	0.00050747	-0.24106	-0.00012638	524.2686875727288	69.518	1.7593	66.036	65.371	67.13	-3.4812					74	35	4	0	0	0	0.098892	4	5216	5180;5191;5203;5216		97.473	14.067	1	1960900	+		36728	19568	30264	30290	40114;40115;40116;40117	40117					0.0005011405410186853
LVMKKATLD	9	Unmodified	_LVMKKATLD_					0	0	0			REV__nc|ENSG00000132906|P55211-4|CASP9	REV__nc|ENSG00000132906|P55211-4|CASP9	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.8062744140625	2	509.801903	1017.58925	2.0238	0.0010317	1.6092	0.00082039	3.633	0.0018521	509.80258654056354	136.53	4.9049	134.99	133.61	138.51	-1.5437					290	101	5	0	0	0	0.63422	1	13510	13510		27.882	2.4321	1	173450	+		36729	19112	30265	30291	40118	40118					0.08116144265068215
LVMTFMLYKI	10	Unmodified	_LVMTFMLYKI_					0	0	0			REV__ENST00000573209.1_1_17:7350776-7358776:+|nuORF	REV__ENST00000573209.1_1_17:7350776-7358776:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	629.8478393554688	2	629.850538	1257.68652	0.41848	0.00026358	-2.7543	-0.0017348	-2.3358	-0.0014712	629.8484322050896	91.238	2.6459	90.003	89.341	91.986	-1.2355					108	50	4	0	0	0	0.5635	1	8081	8081		26.693	0	1	840130	+		36730	21519	30266	30292	40119	40119					0.06798790149696288
LVNAPRSPPRR	11	Unmodified	_LVNAPRSPPRR_					0	0	0			REV__ENST00000254942.7_1_16:69390540-69390804:-|nuORF	REV__ENST00000254942.7_1_16:69390540-69390804:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	421.2315979003906	3	421.586189	1261.73674	-0.25457	-0.00010732	0.33671	0.00014195	0.082146	3.4632E-05	421.58609352031453	24.887	0.3036	24.887	24.738	25.042	0					13	5	3	0	0	0	0.026033	1	514	514		28.577	10.046	1	27637	+		36731	23884	30267	30293	40120	40120					0.11633796914065897
LVNAVYQQL	9	Unmodified	_LVNAVYQQL_					0	0	0		tr|A0A553STZ8|A0A553STZ8_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06035PE=4SV=1	tr|A0A553STZ8|A0A553STZ8_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06035PE=4SV=1	tr|A0A553STZ8|A0A553STZ8_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06035PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	524.8058471679688	2	524.295299	1046.57605	1.5124	0.00079295	0.90863	0.00047639	2.421	0.0012693	524.2957865301821	116.57	1.6536	116.57	116.23	117.88	0					78	35	5	0	0	0	0.21395	1	13403	13403		73.975	6.4811	1	13561000			36732	34557	30268	30294	40121	40121					0.05462029477325814
LVNAVYQQL	9	Unmodified	_LVNAVYQQL_					0	0	0		tr|A0A553STZ8|A0A553STZ8_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06035PE=4SV=1	tr|A0A553STZ8|A0A553STZ8_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06035PE=4SV=1	tr|A0A553STZ8|A0A553STZ8_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06035PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	524.8050537109375	2	524.295299	1046.57605	-0.92225	-0.00048353	1.1699	0.00061337	0.24765	0.00012984	524.2957443271708	116.92	1.684	116.79	116.47	118.15	-0.12869					60	33	4	0	0	0	0.22961	1	11218	11218		71.296	3.802	1	635800			36733	34557	30268	30294	40122	40122					0.05462029477325814
LVNDRVRI	8	Unmodified	_LVNDRVRI_					0	0	0			REV__BAHD1|p.T631N|1|0.24|ENSG00000140320|chr15:40463937-40463937|C/A|missense_variant	REV__BAHD1|p.T631N|1|0.24|ENSG00000140320|chr15:40463937-40463937|C/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	492.80096435546875	2	492.801083	983.587613	-0.24793	-0.00012218	-0.089465	-4.4088E-05	-0.33739	-0.00016627	492.8009419082902	56.6	1.5858	53.796	53.175	54.761	-2.804					103	31	4	0	0	0	0.7224	1	4030	4030		38.806	1.647	1	477380	+		36734	15692	30269	30295	40123	40123					0.09516271291329303
LVNESITLL	9	Unmodified	_LVNESITLL_					0	0	0		tr|A0A7D7A384|A0A7D7A384_9CLOTPyrroline-5-carboxylatereductaseOS=ClostridiumintestinaleOX=36845GN=proCPE=3SV=1	tr|A0A7D7A384|A0A7D7A384_9CLOTPyrroline-5-carboxylatereductaseOS=ClostridiumintestinaleOX=36845GN=proCPE=3SV=1	tr|A0A7D7A384|A0A7D7A384_9CLOTPyrroline-5-carboxylatereductaseOS=ClostridiumintestinaleOX=36845GN=proCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.296875	2	501.297507	1000.58046	-0.7406	-0.00037126	0.40125	0.00020114	-0.33935	-0.00017012	501.29758752104317	121.49	1.58	120.14	119.79	121.37	-1.3479					96	30	5	0	0	0	0.3076	1	11505	11505		62.107	6.6032	1	552180			36735	36107	30270	30296	40124	40124					0.08019493900224006
LVNGFAKNP	9	Unmodified	_LVNGFAKNP_					0	0	0		ENST00000465360.1_1_2:24338455-24346062:-|nuORF;ENSG00000176732|ENST00000313213|PFN4	ENST00000465360.1_1_2:24338455-24346062:-|nuORF	ENST00000465360.1_1_2:24338455-24346062:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.2895202636719	2	480.269084	958.523616	-0.62811	-0.00030166	1.089	0.00052304	0.46094	0.00022138	480.2693311522298	91.993	1.3147	89.45	88.862	90.176	-2.5425					69	25	3	0	0	0	0.027462	1	7968	7968		45.952	30.31	1	326480			36736	7626	30271	30297	40125	40125					0.042694911343687636
LVNGIRIL	8	Unmodified	_LVNGIRIL_					0	0	0		ENST00000283351.8_1_18:29410335-29410500:-|nuORF	ENST00000283351.8_1_18:29410335-29410500:-|nuORF	ENST00000283351.8_1_18:29410335-29410500:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	449.2694091796875	2	449.297645	896.580737	1.0882	0.0004889	-1.6194	-0.00072761	-0.53129	-0.00023871	449.2968795194225	113.5	0.15565	112.43	112.3	112.45	-1.0753					4	2	2	0	0	0	0.028476	1	8332	8332		79.939	27.64	1	7303.7			36737	10061	30272	30298	40126	40126					0.12830958410745552
LVNHRYKG	8	Unmodified	_LVNHRYKG_					0	0	0			REV__ENSG00000149596|ENST00000372980|JPH2	REV__ENSG00000149596|ENST00000372980|JPH2	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.77825927734375	2	493.780151	985.545748	1.3291	0.00065627	3.6967	0.0018254	5.0258	0.0024816	493.78175938735615	138.46	0.38576	138.46	138.21	138.59	0					12	7	2	0	0	0	0.028476	1	16139	16139		12.959	0	1	54599	+		36738	20171	30273	30299	40127	40127					0.05239715602795059
LVNLDRPKLN	10	Unmodified	_LVNLDRPKLN_					0	0	0			REV__nc|ENSG00000122203|Q96A73-3|KIAA1191	REV__nc|ENSG00000122203|Q96A73-3|KIAA1191	MULTI-SECPEP	OvCa9_classI_Rep4_	4	591.3731689453125	2	591.35368	1180.69281	-0.44922	-0.00026565	0.52104	0.00030812	0.071813	4.2467E-05	591.3536960372779	74.058	0.80599	70.827	70.531	71.337	-3.2308					24	16	3	0	0	0	0.026653	1	5762	5762		58.23	15.834	1	52509	+		36739	18583	30274	30300	40128	40128					0.10968767697090698
LVNLLKFFV	9	Unmodified	_LVNLLKFFV_					0	0	0		L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|309|2|anti-sense;chr3:189023348-189023750|247|10.3|0.01|9.43|+|2|TE_info:L1PA3,L1PA3_dup2320,L1,LINE,donor,-,189017230,189023348|None,TPRG1|22	L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|309|2|anti-sense	L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|309|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.840087890625	2	546.844428	1091.6743	-6.4593	-0.0035322	-1.1396	-0.00062319	-7.5989	-0.0041554	546.8437237604664	159.32	1.8651	157.73	157.41	159.27	-1.5858					118	42	5	0	0	0	0.59983	1	15771	15771		31.955	6.5047	1	864300			36740	483	30275	30301	40129	40129					0.13213257793177036
LVNLLTRYKI	10	Unmodified	_LVNLLTRYKI_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	OvCa9_classI_Rep3	3	616.8898315429688	2	616.889898	1231.76524	1.5653	0.00096564	-1.5921	-0.00098216	-0.026772	-1.6515E-05	616.8887825354376	105.36	1.1977	104.02	103.73	104.93	-1.3482					59	22	4	0	0	0	0.60504	1	7394	7394		41.427	14.379	1	355930			36741	3631	30276	30302	40130	40130					0.15863101770651156
LVNLLTRYKI	10	Unmodified	_LVNLLTRYKI_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	OvCa9_classI_Rep4_	4	616.891357421875	2	616.889898	1231.76524	-0.33016	-0.00020367	0.27741	0.00017113	-0.052751	-3.2542E-05	616.8899787844057	105.99	1.2851	103.97	103.7	104.98	-2.0161					59	24	4	0	0	0	0.47142	2	9635	9635;9647		58.23	18.172	1	363170			36742	3631	30276	30302	40131;40132	40131					0.15863101770651156
LVNLLTRYKI	10	Unmodified	_LVNLLTRYKI_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	616.889898	1231.76524	-1.1563	-0.00071332	0.78082	0.00048168	-0.37549	-0.00023164	616.8902790481417	104.47	1.3367	103.89	103.52	104.86	-0.57639	-0.070116	0.0010389	NaN	58.23	67	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	289580			36743	3631	30276	30302							0.15863101770651156
LVNLQGTVVF	10	Unmodified	_LVNLQGTVVF_					0	0	0		nc|ENSG00000163393|Q8IZD6-2|SLC22A15;ENSG00000163393|ENST00000369503|SLC22A15	nc|ENSG00000163393|Q8IZD6-2|SLC22A15	nc|ENSG00000163393|Q8IZD6-2|SLC22A15	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.3164672851562	2	545.318774	1088.623	-0.51372	-0.00028014	-3.2363	-0.0017648	-3.75	-0.002045	545.3169196404446	142.63	4.7541	141.19	139.73	144.49	-1.4427					172	91	2	0	0	0	0.72142	1	14088	14088		28.081	3.5623	1	155190			36744	6298	30277	30303	40133	40133					0.08222889028479585
LVNNFSIGIL	10	Unmodified	_LVNNFSIGIL_					0	0	0		tr|A0A7D6VQS0|A0A7D6VQS0_9CLOTPTSsystemmannitol-specificEIICBcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_02735PE=4SV=1	tr|A0A7D6VQS0|A0A7D6VQS0_9CLOTPTSsystemmannitol-specificEIICBcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_02735PE=4SV=1	tr|A0A7D6VQS0|A0A7D6VQS0_9CLOTPTSsystemmannitol-specificEIICBcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_02735PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	545.31689453125	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.73378	1	14157	14157		26.693	5.746	1	202430			36745	34867	30278	30304	40134	40134					0.08222889028479585
LVNNFSIGIL	10	Unmodified	_LVNNFSIGIL_					0	0	0		tr|A0A7D6VQS0|A0A7D6VQS0_9CLOTPTSsystemmannitol-specificEIICBcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_02735PE=4SV=1	tr|A0A7D6VQS0|A0A7D6VQS0_9CLOTPTSsystemmannitol-specificEIICBcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_02735PE=4SV=1	tr|A0A7D6VQS0|A0A7D6VQS0_9CLOTPTSsystemmannitol-specificEIICBcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_02735PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.31689453125	2	545.318774	1088.623	-0.51372	-0.00028014	-3.2363	-0.0017648	-3.75	-0.002045	545.3169196404446	142.63	4.7541	141.19	139.73	144.49	-1.4427					172	91	2	0	0	0	0.75313	1	13887	13887		24.519	0.31644	1	155190			36746	34867	30278	30304	40135	40135					0.08222889028479585
LVNNGKAIL	9	Unmodified	_LVNNGKAIL_					0	0	0			REV__nc|ENSG00000183091|P20929-4|NEB	REV__nc|ENSG00000183091|P20929-4|NEB	MULTI-MSMS	OvCa9_classI_Rep3	3	471.29364013671875	2	471.292559	940.570566	-0.27751	-0.00013079	0.10562	4.9779E-05	-0.17189	-8.101E-05	471.2925260681946	81.937	1.3959	79.64	79.284	80.68	-2.2963					82	27	4	0	0	0	0.17908	1	4580	4580		79.939	1.9954	1	1242100	+		36747	22341	30279	30305	40136	40136					0.09790350685523208
LVNRNLAGK	9	Unmodified	_LVNRNLAGK_					0	0	0		ENSG00000047578|ENST00000261588|KATNIP;ENST00000573850.1_1_16:27709674-27761267:+|nuORF	ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.8023376464844	2	492.801083	983.587613	0.31013	0.00015283	-0.88334	-0.00043531	-0.57321	-0.00028248	492.8006535263743	57.337	1.4719	53.992	53.527	54.999	-3.3449					50	28	2	0	0	0	0.44294	1	3715	3715		47.916	0	1	1133100			36748	1146	30280	30306	40137	40137					0.09516271291317935
LVNRVQMARRK	11	Unmodified	_LVNRVQMARRK_					0	0	0			REV__nc|ENSG00000068885|Q9P2H3-2|IFT80	REV__nc|ENSG00000068885|Q9P2H3-2|IFT80	MULTI-MSMS	OvCa9_classI_Rep3	3	457.6084289550781	3	457.610228	1369.80886	-6.2055	-0.0028397	1.6375	0.00074934	-4.568	-0.0020904	457.6108688134911	157.03	3.4081	155.86	154.91	158.32	-1.1707					147	80	2	0	0	0	0.72466	1	13634	13634		20.03	0.7678	1	68588	+		36749	16861	30281	30307	40138	40138					0.13874387996111182
LVNSLEERR	9	Unmodified	_LVNSLEERR_					0	0	0			REV__chr19:5691453-5691562|94|124.69|0.17|9.52|+|0|RPL36,None|1	REV__chr19:5691453-5691562|94|124.69|0.17|9.52|+|0|RPL36,None|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.8283081054688	2	558.312012	1114.60947	1.2792	0.00071417	4.4461	0.0024823	5.7253	0.0031965	558.3144977920239	109.78	0.68516	108.18	108.02	108.7	-1.6011					19	12	2	0	0	0	0.027448	1	10090	10090		63.306	6.5852	1	34544	+		36750	15985	30282	30308	40139	40139					0.05675031249234053
LVNSTILKL	9	Unmodified	_LVNSTILKL_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.3017272949219	2	500.823692	999.632832	-1.3307	-0.00066642	0.24306	0.00012173	-1.0876	-0.00054469	500.82376430793	103.12	1.8272	102.43	101.89	103.71	-0.68459					73	34	3	0	0	0	0.027108	1	9505	9505		115.49	0	1	271150			36751	7677	30283	30309	40140	40140					0.13300077033841262
LVNSTILKL	9	Unmodified	_LVNSTILKL_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.3017883300781	2	500.823692	999.632832	-0.74036	-0.00037079	-0.62172	-0.00031137	-1.3621	-0.00068216	500.82344768541367	104.59	1.8874	102.48	102.06	103.95	-2.1192					81	33	3	0	0	0	0.027301	1	9471	9471		115.49	0	1	274780			36752	7677	30283	30309	40141	40141					0.13300077033841262
LVNTIKLT	8	Unmodified	_LVNTIKLT_					0	0	0			REV__tr|A0A553SKU2|A0A553SKU2_NIACITranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_19300PE=4SV=1	REV__tr|A0A553SKU2|A0A553SKU2_NIACITranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_19300PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	451.2904968261719	2	451.289485	900.564418	0.24558	0.00011083	-0.62488	-0.000282	-0.3793	-0.00017117	451.28909551125827	74.128	2.1614	70.897	70.579	72.741	-3.2308					113	44	5	0	0	0	0.32444	1	5771	5771		102.77	17.613	1	1762500	+		36753	30152	30284	30310	40142	40142					0.11015832453972507
LVNYPYLVK	9	Unmodified	_LVNYPYLVK_					0	0	0			REV__ENST00000261875.9_1_15:65868985-65869141:+|nuORF	REV__ENST00000261875.9_1_15:65868985-65869141:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.8104248046875	2	554.823692	1107.63283	1.8137	0.0010063	3.7205	0.0020642	5.5343	0.0030705	554.8256351981076	92.25	0.71501	92.25	91.879	92.594	0					31	16	3	0	0	0	0.027462	1	9989	9989		30.504	0	1	183630	+		36754	23961	30285	30311	40143	40143					0.0833207703383323
LVPAAPSPGPE	11	Unmodified	_LVPAAPSPGPE_					0	0	0		ENST00000535420.5_1_1:154989902-154990361:+|nuORF	ENST00000535420.5_1_1:154989902-154990361:+|nuORF	ENST00000535420.5_1_1:154989902-154990361:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.3248291015625	2	517.779482	1033.54441	0.88182	0.00045659	-0.91016	-0.00047126	-0.028338	-1.4673E-05	517.7792791774324	104.84	0.46617	103.49	103.21	103.68	-1.3482					11	8	2	0	0	0	0.0253	1	7336	7336		42.396	20.436	1	25596			36755	13376	30286	30312	40144	40144					0.028980367233771176
LVPAPRTL	8	Unmodified	_LVPAPRTL_					0	0	0		ENST00000509647.1_1_4:187647713-187647806:-|nuORF	ENST00000509647.1_1_4:187647713-187647806:-|nuORF	ENST00000509647.1_1_4:187647713-187647806:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	433.77752685546875	2	433.776545	865.538538	0.0754	3.2707E-05	-0.37935	-0.00016455	-0.30395	-0.00013185	433.77617393676405	95.908	1.1656	93.483	93.254	94.42	-2.4256					52	22	3	0	0	0	0.45246	1	8454	8454		82.305	5.4584	1	309770			36756	12961	30287	30313	40145	40145					0.10038983002368695
LVPAPRTL	8	Unmodified	_LVPAPRTL_					0	0	0		ENST00000509647.1_1_4:187647713-187647806:-|nuORF	ENST00000509647.1_1_4:187647713-187647806:-|nuORF	ENST00000509647.1_1_4:187647713-187647806:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	433.776545	865.538538	-0.36107	-0.00015662	0.48464	0.00021023	0.12357	5.3603E-05	433.77661112326797	94.535	1.1805	93.435	93.165	94.345	-1.0995	-0.016225	0.00029218	NaN	82.305	52	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249650			36757	12961	30287	30313							0.10038983002368695
LVPCKKLLHT	10	Unmodified	_LVPCKKLLHT_					0	0	0			REV__ZNF142|p.S904Tfs*73|1|0.05|ENSG00000115568|chr2:218643805-218643806|GA/-|frameshift_variant	REV__ZNF142|p.S904Tfs*73|1|0.05|ENSG00000115568|chr2:218643805-218643806|GA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	576.3540649414062	2	576.352094	1150.68964	-0.29031	-0.00016732	2.7642	0.0015932	2.4739	0.0014259	576.3537371528553	71.759	4.075	69.252	68.91	72.985	-2.5071					188	77	5	0	0	0	0.58282	1	5830	5830		44.117	1.7207	1	5146300	+		36758	18255	30288	30314	40146	40146					0.12031801318721591
LVPDELLV	8	Unmodified	_LVPDELLV_					0	0	0			REV__nc|ENSG00000196139|P42330-2|AKR1C3	REV__nc|ENSG00000196139|P42330-2|AKR1C3	MULTI-MSMS	OvCa9_classI_Rep3	3	449.2694396972656	2	449.268219	896.521884	0.9461	0.00042505	0.42185	0.00018952	1.3679	0.00061457	449.26835717612227	113.5	2.9115	112.42	112.15	115.06	-1.0753					133	57	4	0	0	0	0.69415	1	8327	8327		44.531	0	1	1514000	+		36759	22789	30289	30315	40147	40147					0.06948437325763734
LVPDELLV	8	Unmodified	_LVPDELLV_					0	0	0			REV__nc|ENSG00000196139|P42330-2|AKR1C3	REV__nc|ENSG00000196139|P42330-2|AKR1C3	MULTI-MSMS	OvCa9_classI_Rep4_	4	449.26861572265625	2	449.268219	896.521884	1.103	0.00049553	0.22693	0.00010195	1.3299	0.00059748	449.26826553228875	113.95	2.2702	112.5	112.2	114.47	-1.4461					120	44	4	0	0	0	0.69415	1	10574	10574		44.531	0	1	1786500	+		36760	22789	30289	30315	40148	40148					0.06948437325763734
LVPETELGL	9	Unmodified	_LVPETELGL_					0	0	0			REV__ENST00000589203.5_2_18:14077183-14077513:-|nuORF	REV__ENST00000589203.5_2_18:14077183-14077513:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	485.773681640625	2	485.776408	969.538263	0.72839	0.00035383	-3.7932	-0.0018426	-3.0648	-0.0014888	485.7744551887758	43.049	1.3356	40.339	39.868	41.203	-2.7097					59	26	3	0	0	0	0.58665	1	2357	2357		33.516	1.5607	1	230050	+		36761	27903	30290	30316	40149	40149					0.05227518491858518
LVPFQLPIL	9	Unmodified	_LVPFQLPIL_					0	0	0		ENST00000574517.1_1_17:79210749-79211322:-|nuORF;ENST00000576090.5_1_17:79211175-79211445:-|nuORF	ENST00000574517.1_1_17:79210749-79211322:-|nuORF	ENST00000574517.1_1_17:79210749-79211322:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	520.3280639648438	2	520.331153	1038.64775	-0.29574	-0.00015388	-4.1421	-0.0021553	-4.4379	-0.0023092	520.3288824399598	115.77	1.6292	114.72	114.06	115.69	-1.0414					54	32	2	0	0	0	0.17908	1	8620	8620		79.939	5.6842	1	448460			36762	13934	30291	30317	40150	40150					0.12997568901846535
LVPHCLFW	8	Unmodified	_LVPHCLFW_					0	0	0			REV__ENSG00000152749|ENST00000376958|GPR180	REV__ENSG00000152749|ENST00000376958|GPR180	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7620544433594	2	507.765123	1013.51569	-1.0585	-0.00053749	-3.0386	-0.0015429	-4.0971	-0.0020804	507.76339249084987	120.97	3.7026	120.77	119.77	123.47	-0.19719					124	74	3	0	0	0	0.69862	1	11671	11671		43.626	4.3732	1	110330	+		36763	20300	30292	30318	40151	40151					0.009476406132421289
LVPHCLFW	8	Unmodified	_LVPHCLFW_					0	0	0			REV__ENSG00000152749|ENST00000376958|GPR180	REV__ENSG00000152749|ENST00000376958|GPR180	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.76220703125	2	507.765123	1013.51569	-1.0595	-0.00053799	-3.7069	-0.0018822	-4.7664	-0.0024202	507.76307961190355	127.55	2.4705	126.11	125.15	127.62	-1.4357					106	48	4	0	0	0	0.7363	1	12234	12234		33.493	0	1	646950	+		36764	20300	30292	30318	40152	40152					0.009476406132421289
LVPIITTR	8	Unmodified	_LVPIITTR_					0	0	0			REV__tr|A0A553SR30|A0A553SR30_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_00300PE=4SV=1	REV__tr|A0A553SR30|A0A553SR30_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_00300PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	456.7965393066406	2	456.797478	911.580402	0.45168	0.00020633	-0.42864	-0.0001958	0.023038	1.0524E-05	456.7970931669125	115.48	1.1861	115.37	114.9	116.08	-0.11777					40	23	2	0	0	0	0.73205	1	11010	11010		35.618	2.1027	1	86613	+		36765	30686	30293	30319	40153	40153					0.12107538690872843
LVPILRPLL	9	Unmodified	_LVPILRPLL_					0	0	0			REV__ENST00000506951.5_1_4:20711306-20720453:+|nuORF	REV__ENST00000506951.5_1_4:20711306-20720453:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3599243164062	2	517.360245	1032.70594	0.038556	1.9947E-05	-0.44941	-0.00023251	-0.41085	-0.00021256	517.3599133873521	135.24	1.9126	135.01	134.59	136.5	-0.22696					104	38	4	0	0	0	0.34496	3	13469	13393;13396;13469		57.811	3.6683	1	602160	+		36766	20812	30294	30320	40154;40155;40156	40156					0.1908925054710835
LVPILRPLL	9	Unmodified	_LVPILRPLL_					0	0	0			REV__ENST00000506951.5_1_4:20711306-20720453:+|nuORF	REV__ENST00000506951.5_1_4:20711306-20720453:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	517.359375	2	517.360245	1032.70594	-0.63272	-0.00032734	0.17774	9.1954E-05	-0.45498	-0.00023539	517.3601946717101	136.63	2.1947	135.53	135.15	137.35	-1.1023					115	44	4	0	0	0	0.59983	1	11079	11079		31.955	1.4512	1	468020	+		36767	20812	30294	30320	40157	40157					0.1908925054710835
LVPIVKGLRR	10	Unmodified	_LVPIVKGLRR_					0	0	0			REV__nc|ENSG00000116497|Q96BU1-2|S100PBP	REV__nc|ENSG00000116497|Q96BU1-2|S100PBP	MULTI-SECPEP	OvCa9_classI_Rep2	2	575.8519287109375	2	575.892775	1149.771	0.91217	0.00052531	4.1034	0.0023631	5.0155	0.0028884	575.895427921302	87.783	0.38902	86.352	86.139	86.528	-1.4311					15	7	3	0	0	0	0.027021	1	7689	7689		37.159	15.199	1	30740	+		36768	18303	30295	30321	40158	40158					0.20210245072985344
LVPIVLTYFV	10	Unmodified	_LVPIVLTYFV_					0	0	0			REV__nc|ENSG00000254658|Q8NGG1|OR8J2	REV__nc|ENSG00000254658|Q8NGG1|OR8J2	MULTI-MSMS	OvCa9_classI_Rep3	3	582.352783203125	2	582.357368	1162.70018	-7.9562	-0.0046334	2.524	0.0014699	-5.4322	-0.0031635	582.3588190999388	163.99	0.44727	162.6	162.3	162.74	-1.3925					26	10	3	0	0	0	0.7759	1	14301	14301		21.96	0	1	688030	+		36769	29174	30296	30322	40159	40159					0.1253410724477817
LVPLFDCFIHE	11	Unmodified	_LVPLFDCFIHE_					0	0	0			REV__ENSG00000196171|ENST00000359610|OR6K2	REV__ENSG00000196171|ENST00000359610|OR6K2	MULTI-MSMS	OvCa9_classI_Rep2	2	444.89501953125	3	444.893408	1331.65839	0.47887	0.00021304	1.2336	0.00054884	1.7125	0.00076188	444.89387037841243	119.71	2.218	119.53	118.91	121.12	-0.17138					107	44	4	0	0	0	0.70032	1	11519	11519		29.551	2.5034	1	224300	+		36770	22793	30297	30323	40160	40160					0.005831834939726832
LVPLLQNRSV	10	Unmodified	_LVPLLQNRSV_					0	0	0			REV__nc|ENSG00000137760|Q96BT7-3|ALKBH8	REV__nc|ENSG00000137760|Q96BT7-3|ALKBH8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	569.8350830078125	2	569.850773	1137.68699	-0.70479	-0.00040162	4.2095	0.0023988	3.5048	0.0019972	569.8534151218192	99.942	0.55209	97.617	97.315	97.867	-2.3253					22	10	3	0	0	0	0.02706	1	8895	8895		12.207	5.894	1	61245	+		36771	19472	30298	30324	40161	40161					0.12365669185396655
LVPSGVGGPLC	11	Unmodified	_LVPSGVGGPLC_					0	0	0			REV__ENST00000576423.1_1_16:2880579-2880798:+|nuORF	REV__ENST00000576423.1_1_16:2880579-2880798:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	499.76824951171875	2	499.770603	997.526652	0.041509	2.0745E-05	-4.0416	-0.0020199	-4.0001	-0.0019991	499.76830208981505	103.99	1.3013	102.56	102.18	103.49	-1.4347					51	24	3	0	0	0	0.68263	1	7237	7237		35.618	1.6967	1	340580	+		36772	27784	30299	30325	40162	40162					0.027789981968794564
LVPSHRLP	8	Unmodified	_LVPSHRLP_					0	0	0			REV__ENST00000369304.7_1_1:145524962-145527628:+|nuORF	REV__ENST00000369304.7_1_1:145524962-145527628:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	459.7803955078125	2	459.779619	917.544686	2.5011	0.0011499	-0.43812	-0.00020144	2.0629	0.00094849	459.77937092167315	84.497	0.82642	84.497	84.22	85.046	0					42	19	4	0	0	0	0.66704	2	8813	8813;8843		50.025	4.0726	1	2010200	+		36773	24938	30300	30326	40163;40164	40163					0.08261501233891977
LVPSHRLP	8	Unmodified	_LVPSHRLP_					0	0	0			REV__ENST00000369304.7_1_1:145524962-145527628:+|nuORF	REV__ENST00000369304.7_1_1:145524962-145527628:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	459.779619	917.544686	2.5011	0.0011499	-0.43812	-0.00020144	2.0629	0.00094849	459.77937092167315	84.497	0.82642	84.497	84.22	85.046	0	0	0	NaN	50.025	42	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2010200	+		36774	24938	30300	30326							0.08261501233891977
LVPSRFLTL	9	Unmodified	_LVPSRFLTL_					0	0	0		ENST00000417073.2_1_17:8079275-8079655:-|nuORF;nc|ENSG00000179029|Q6UX40-3|TMEM107;ENSG00000179029|ENST00000437139|TMEM107;nc|ENSG00000179029|Q6UX40-4|TMEM107;nc|ENSG00000179029|Q6UX40-2|TMEM107	ENST00000417073.2_1_17:8079275-8079655:-|nuORF	ENST00000417073.2_1_17:8079275-8079655:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3262939453125	2	523.32386	1044.63317	0.90245	0.00047227	-1.0468	-0.00054782	-0.14435	-7.5541E-05	523.3231203427081	131.19	1.3271	130.96	130.65	131.98	-0.22696					57	26	3	0	0	0	0.33652	1	12913	12913		58.782	7.4465	1	194020			36775	7795	30301	30327	40165	40165					0.1126349675369056
LVPSRINEA	9	Unmodified	_LVPSRINEA_					0	0	0		ENSG00000162621|ENST00000294635|LRRC53	ENSG00000162621|ENST00000294635|LRRC53	ENSG00000162621|ENST00000294635|LRRC53	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.3053894042969	2	499.785099	997.555644	0.077866	3.8916E-05	1.0368	0.00051818	1.1147	0.00055709	499.7848363789194	96.385	1.0518	93.96	93.659	94.711	-2.4256					45	20	3	0	0	0	0.027433	1	8559	8559		47.916	0	1	137320			36776	6206	30302	30328	40166	40166					0.05676858817514585
LVPSSEPQGAP	11	Unmodified	_LVPSSEPQGAP_					0	0	0			REV__ENST00000496607.5_1_21:47686374-47686602:-|nuORF	REV__ENST00000496607.5_1_21:47686374-47686602:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	541.2806396484375	2	541.279846	1080.54514	2.1108	0.0011425	0.27403	0.00014833	2.3848	0.0012908	541.2798889491341	76.858	1.0571	76.858	76.365	77.422	0					48	25	3	0	0	0	0.14417	1	7746	7746		87.696	1.8346	1	4476300	+		36777	26764	30303	30329	40167	40167					0.008088313724329055
LVPSSISVML	10	Unmodified	_LVPSSISVML_					0	0	0			REV__ENST00000480730.5_1_6:33272736-33281818:-|nuORF	REV__ENST00000480730.5_1_6:33272736-33281818:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3031005859375	2	523.301736	1044.58892	-0.69596	-0.0003642	4.2173	0.0022069	3.5214	0.0018427	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.71192	1	13816	13816		29.15	2.4566	1	130240	+		36778	16076	30304	30330	40168	40168					0.06840724545213561
LVPTLREMVA	10	Unmodified	_LVPTLREMVA_					0	0	0		ENSG00000179314|ENST00000317744|WSCD1	ENSG00000179314|ENST00000317744|WSCD1	ENSG00000179314|ENST00000317744|WSCD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.830322265625	2	564.825909	1127.63727	1.1597	0.00065501	1.8869	0.0010658	3.0465	0.0017208	564.826863229148	56.435	1.8282	53.14	52.92	54.748	-3.2944					87	35	5	0	0	0	0.6104	1	3605	3605		40.778	0	1	938020			36779	7815	30305	30331	40169	40169					0.07855218185136437
LVPVKEEPKK	10	Unmodified	_LVPVKEEPKK_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa99_classI_Rep5	1	583.8600463867188	2	583.860806	1165.70706	0.37379	0.00021824	-2.3223	-0.0013559	-1.9485	-0.0011377	583.859324866827	159.93	1.5367	159.93	159.57	161.11	0					103	30	5	0	0	0	0.65434	1	18726	18726		35.618	0.46626	1	2253700	+		36780	28942;32737	30306	30332	40170	40170					0.1308342012534922
LVPVRKNV	8	Unmodified	_LVPVRKNV_					0	0	0			REV__tr|A0A553SF74|A0A553SF74_NIACIDihydrodipicolinatesynthasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_08355PE=3SV=1	REV__tr|A0A553SF74|A0A553SF74_NIACIDihydrodipicolinatesynthasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_08355PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.2458801269531	2	462.803094	923.591636	-0.50268	-0.00023264	-0.13803	-6.3882E-05	-0.64071	-0.00029652	462.8029040662682	63.972	0.92276	60.497	60.251	61.173	-3.475					30	18	2	0	0	0	0.028476	1	4521	4521		8.2313	0	1	129250	+		36781	29541	30307	30333	40171	40171					0.12678360785037057
LVPWLHPHL	9	Unmodified	_LVPWLHPHL_					0	0	0			REV__ENST00000469537.1_1_1:156169610-156169919:+|nuORF	REV__ENST00000469537.1_1_1:156169610-156169919:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	556.3233642578125	2	556.324194	1110.63383	1.2043	0.00066999	-2.5321	-0.0014087	-1.3278	-0.00073866	556.32262440789	125.61	1.4815	125.38	125.01	126.49	-0.2359					75	29	4	0	0	0	0.53728	1	12245	12245		39.021	1.8624	1	284060	+		36782	25633	30308	30334	40172	40172					0.08294336193421259
LVPYVAALL	9	Unmodified	_LVPYVAALL_					0	0	0			REV__tr|A0A7D6W0A2|A0A7D6W0A2_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_23010PE=4SV=1	REV__tr|A0A7D6W0A2|A0A7D6W0A2_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_23010PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	479.7874450683594	2	479.802229	957.589904	-0.4029	-0.00019331	1.3828	0.00066346	0.97987	0.00047015	479.8037503666317	77.815	0.34305	75.463	75.304	75.647	-2.3527					13	6	3	0	0	0	0.027462	1	4104	4104		39.021	1.993	1	25212	+		36783	31853	30309	30335	40173	40173					0.10941306976428677
LVQAHVSVL	9	Unmodified	_LVQAHVSVL_					0	0	0		Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|112|1|anti-sense	Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|112|1|anti-sense	Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|112|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	483.2930603027344	2	483.292559	964.570566	-0.759	-0.00036682	0.45964	0.00022214	-0.29936	-0.00014468	483.2927106787504	90.319	2.1868	88.238	87.798	89.985	-2.0805					92	42	3	0	0	0	0.33652	1	5629	5629		58.782	3.2778	1	1237800			36784	14384	30310	30336	40174	40174					0.08686350685513844
LVQALALRL	9	Unmodified	_LVQALALRL_					0	0	0			REV__nc|ENSG00000133687|Q8IUR5-1|TMTC1	REV__nc|ENSG00000133687|Q8IUR5-1|TMTC1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.8322448730469	2	498.831852	995.649151	-0.12378	-6.1747E-05	-0.5846	-0.00029162	-0.70838	-0.00035336	498.8315084055956	72.541	2.8193	70.141	69.802	72.621	-2.3999					123	53	5	0	0	0	0.29717	1	5884	5884		63.306	0	1	1514600	+		36785	19152	30311	30337	40175	40175					0.1511520299059157
LVQEPIIVN	9	Unmodified	_LVQEPIIVN_					0	0	0			REV__nc|ENSG00000067646|P08048-3|ZFY	REV__nc|ENSG00000067646|P08048-3|ZFY	MULTI-SECPEP	OvCa9_classI_Rep2	2	511.83447265625	2	512.8055	1023.59645	-1.5014	-0.00076991	1.3608	0.00069785	-0.14052	-7.2059E-05	512.8059599144971	118.78	1.484	118.64	118.18	119.67	-0.14755					36	29	2	0	0	0	0.027462	1	11526	11526		26.693	4.733	1	20536	+		36786	16837	30312	30338	40176	40176					0.08559200137142398
LVQEVPRR	8	Unmodified	_LVQEVPRR_					0	0	0			REV__ENSG00000178685|ENST00000313028|PARP10	REV__ENSG00000178685|ENST00000313028|PARP10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.78961181640625	2	498.801083	995.587613	-0.29042	-0.00014486	-0.2881	-0.0001437	-0.57851	-0.00028856	498.8009887817096	116.53	0.25815	115.17	115.09	115.35	-1.3645					6	4	2	0	0	0	0.028476	1	10880	10880		18.324	0	1	14044	+		36787	22069	30313	30339	40177	40177					0.08964271291324621
LVQFGGFLASN	11	Unmodified	_LVQFGGFLASN_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.8514404296875	2	576.806031	1151.59751	0.11188	6.4535E-05	-1.4048	-0.00081032	-1.293	-0.00074579	576.8054808699709	89.848	0.64955	87.273	87.05	87.7	-2.575					18	12	2	0	0	0	0.025701	1	7730	7730		29.17	7.4843	1	20209			36788	3721	30314	30340	40178	40178					0.027774145060448063
LVQFQETFD	9	Unmodified	_LVQFQETFD_					0	0	0			REV__ETNK1-MYO9B|1|fusion;REV__MYO9B|p.P1393Qfs*60|1|0.26|ENSG00000099331|chr19:17198247-17198247|C/-|frameshift_variant	REV__MYO9B|p.P1393Qfs*60|1|0.26|ENSG00000099331|chr19:17198247-17198247|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	563.84423828125	2	563.774396	1125.53424	-0.96419	-0.00054359	-0.62352	-0.00035153	-1.5877	-0.00089511	564.275027751923	116.68	0.69254	115.64	115.34	116.03	-1.0414					18	13	3	0	0	0	0.027426	1	8706	8706		53.351	0	1	13536	+		36789	28693;28120	30315	30341	40179	40179					-0.023505710018298487
LVQGQSLIEP	10	Unmodified	_LVQGQSLIEP_					0	0	0			REV__nc|ENSG00000173889|Q8NDX5-2|PHC3	REV__nc|ENSG00000173889|Q8NDX5-2|PHC3	MULTI-MSMS	OvCa99_classI_Rep5	1	542.3071899414062	2	542.305864	1082.59717	1.8794	0.0010192	0.96349	0.00052251	2.8429	0.0015417	542.3056808881333	110.28	1.3412	110.28	109.73	111.07	0					127	29	7	0	0	0	0.3094	1	12502	12502		79.713	5.4575	1	2809000	+		36790	21806	30316	30342	40180	40180					0.05917994786182135
LVQGRVPFI	9	Unmodified	_LVQGRVPFI_					0	0	0			REV__nc|ENSG00000203797|Q99489-2|DDO	REV__nc|ENSG00000203797|Q99489-2|DDO	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.8152465820312	2	514.816202	1027.61785	-0.32798	-0.00016885	0.19293	9.9324E-05	-0.13505	-6.9526E-05	514.8161006739908	128.1	1.7242	126.66	126.04	127.76	-1.4357					85	33	4	0	0	0	0.39645	1	12228	12228		52.299	0	1	358610	+		36791	23113	30317	30343	40181	40181					0.10514629956514909
LVQHRLIKLP	10	Unmodified	_LVQHRLIKLP_					0	0	0			REV__nc|ENSG00000132361|O75153|CLUH	REV__nc|ENSG00000132361|O75153|CLUH	MULTI-SECPEP	OvCa9_classI_Rep4_	4	407.2002868652344	3	406.267797	1215.78156	0.53083	0.00021566	-0.35252	-0.00014322	0.17831	7.2441E-05	406.26750666162155	108.91	1.5524	107.18	106.87	108.42	-1.7256					67	29	3	0	0	0	0.027145	1	10002	10002		31.53	5.4664	1	100790	+		36792	19071	30318	30344	40182	40182					0.18230227727417514
LVQIKGEIE	9	Unmodified	_LVQIKGEIE_					0	0	0		ENSG00000117724|ENST00000366955|CENPF;CENPF|p.E1182Vfs*21|1|0.46|ENSG00000117724|chr1:214641879-214641882|AGAG/-|frameshift_variant	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7626342773438	2	514.802957	1027.59136	-0.51209	-0.00026363	0.22052	0.00011352	-0.29157	-0.0001501	514.8028794284498	91.129	1.3736	88.586	88.244	89.618	-2.5425					33	26	2	0	0	0	0.027462	1	7840	7840		17.365	10.629	1	77592			36793	3276	30319	30345	40183	40183					0.07866896274504143
LVQIKGEIE	9	Unmodified	_LVQIKGEIE_					0	0	0		ENSG00000117724|ENST00000366955|CENPF;CENPF|p.E1182Vfs*21|1|0.46|ENSG00000117724|chr1:214641879-214641882|AGAG/-|frameshift_variant	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.802957	1027.59136	1.8842	0.00097	-2.2075	-0.0011364	-0.32326	-0.00016641	514.8015854652871	90.005	1.3872	88.703	88.235	89.622	-1.302	0.11003	-0.00191	NaN	10.866	37	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32655			36794	3276	30319	30345							0.07866896274504143
LVQIKGEIE	9	Unmodified	_LVQIKGEIE_					0	0	0		ENSG00000117724|ENST00000366955|CENPF;CENPF|p.E1182Vfs*21|1|0.46|ENSG00000117724|chr1:214641879-214641882|AGAG/-|frameshift_variant	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	514.802957	1027.59136	-0.22245	-0.00011452	0.062008	3.1922E-05	-0.16045	-8.2598E-05	514.8027803220134	90.57	1.3187	88.49	88.158	89.477	-2.0805	-0.10331	0.00042672	NaN	10.866	33	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90722			36795	3276	30319	30345							0.07866896274504143
LVQLIKRAE	9	Unmodified	_LVQLIKRAE_					0	0	0			REV__EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant	REV__EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.340576171875	2	535.340041	1068.66553	-1.255	-0.00067184	0.66282	0.00035483	-0.59216	-0.00031701	535.340402065357	48.271	2.0484	45.163	44.287	46.335	-3.1077					108	39	4	0	0	0	0.59259	1	2681	2681		32.812	0.85756	1	578390	+		36796	18000	30320	30346	40184	40184					0.13394284156697722
LVQLLLSH	8	Unmodified	_LVQLLLSH_					0	0	0			REV__ENST00000428417.5_1_1:15546239-15546464:+|nuORF	REV__ENST00000428417.5_1_1:15546239-15546464:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	461.592041015625	2	461.789653	921.564752	2.0753	0.00095837	0.78784	0.00036382	2.8632	0.0013222	461.789733615692	100.18	0.25359	100.18	99.984	100.24	0					7	5	2	0	0	0	0.028476	1	11071	11071		23.042	16.73	1	79084	+		36797	25689	30321	30347	40185	40185					0.10083252173853907
LVQNNQLVSL	10	Unmodified	_LVQNNQLVSL_					0	0	0		nc|ENSG00000025156|Q03933-2|HSF2;ENSG00000025156|ENST00000368455|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	MULTI-MSMS	OvCa9_classI_Rep2	2	564.3236083984375	2	564.324588	1126.63462	-1.0002	-0.00056441	0.016008	9.0339E-06	-0.98414	-0.00055538	564.3245968274675	101.36	2.2253	100.59	100.22	102.45	-0.76401					148	44	6	0	0	0	0.11378	10	9309	9282;9285;9291;9297;9303;9309;9315;9322;9335;9348		110.12	23.311	1	4635900			36798	1045	30322	30348	40186;40187;40188;40189;40190;40191;40192;40193;40194;40195	40191					0.0763708605179545
LVQNNQLVSL	10	Unmodified	_LVQNNQLVSL_					0	0	0		nc|ENSG00000025156|Q03933-2|HSF2;ENSG00000025156|ENST00000368455|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	MULTI-MSMS	OvCa9_classI_Rep3	3	564.3255615234375	2	564.324588	1126.63462	-0.81585	-0.00046041	0.067324	3.7993E-05	-0.74853	-0.00042241	564.3246540994279	102.18	2.4595	100.66	100.27	102.73	-1.5211					131	46	5	0	0	0	0.10076	8	7012	7002;7012;7018;7024;7036;7049;7055;7062		113.41	25.235	1	5848300			36799	1045	30322	30348	40196;40197;40198;40199;40200;40201;40202;40203	40197					0.0763708605179545
LVQNNQLVSL	10	Unmodified	_LVQNNQLVSL_					0	0	0		nc|ENSG00000025156|Q03933-2|HSF2;ENSG00000025156|ENST00000368455|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.3255615234375	2	564.324588	1126.63462	0.97654	0.00055109	-1.4497	-0.00081813	-0.47321	-0.00026704	564.3237500544434	102.85	2.5142	100.65	100.25	102.77	-2.1994					128	47	4	0	0	0	0.12182	4	9278	9266;9278;9290;9303		108.09	22.226	1	5226800			36800	1045	30322	30348	40204;40205;40206;40207	40205					0.0763708605179545
LVQQILDSH	9	Unmodified	_LVQQILDSH_					0	0	0		CAMTA1|p.V1621Gfs*12|1|0.03|ENSG00000171735|chr1:7751370-7751371|-/GGGACCACGTGGTTATTCAGCTGGAGTGGGTT|frameshift_variant;nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1	CAMTA1|p.V1621Gfs*12|1|0.03|ENSG00000171735|chr1:7751370-7751371|-/GGGACCACGTGGTTATTCAGCTGGAGTGGGTT|frameshift_variant	CAMTA1|p.V1621Gfs*12|1|0.03|ENSG00000171735|chr1:7751370-7751371|-/GGGACCACGTGGTTATTCAGCTGGAGTGGGTT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.3434448242188	2	526.790381	1051.56621	-0.5382	-0.00028352	0.84564	0.00044547	0.30744	0.00016196	526.7905496812095	69.381	1.4656	69.381	69.063	70.528	0					45	35	2	0	0	0	0.027462	1	6714	6714		37.159	0	1	913120			36801	182	30323	30349	40208	40208					0.04248841471940068
LVQQVQAGGD	10	Unmodified	_LVQQVQAGGD_					0	0	0			REV__ENSG00000196961|ENST00000354293|AP2A1	REV__ENSG00000196961|ENST00000354293|AP2A1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.76251220703125	2	507.764363	1013.51417	0.48571	0.00024663	-3.6429	-0.0018497	-3.1571	-0.0016031	507.76242082287587	126.44	3.901	126.2	123.43	127.33	-0.2359					157	78	4	0	0	0	0.53885	1	12361	12361		49.442	5.3247	1	953460	+		36802	22880	30324	30350	40209	40209					0.007956780581935163
LVQRHLTPR	9	Unmodified	_LVQRHLTPR_					0	0	0		ENSG00000183578|ENST00000637513|TNFAIP8L3;nc|ENSG00000183578|Q5GJ75|TNFAIP8L3	ENSG00000183578|ENST00000637513|TNFAIP8L3	ENSG00000183578|ENST00000637513|TNFAIP8L3	MULTI-MSMS	OvCa9_classI_Rep2	2	560.3405151367188	2	560.340907	1118.66726	-4.5115	-0.002528	3.6455	0.0020427	-0.86609	-0.0004853	560.3427660344651	160.69	1.3876	160.47	160.23	161.62	-0.22697					59	27	4	0	0	0	0.70177	1	16378	16378		17.365	0.89182	1	170910			36803	8087	30325	30351	40210	40210					0.11267337965296065
LVQSDGVLL	9	Unmodified	_LVQSDGVLL_					0	0	0		tr|A0A553STL0|A0A553STL0_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_05305PE=4SV=1	tr|A0A553STL0|A0A553STL0_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_05305PE=4SV=1	tr|A0A553STL0|A0A553STL0_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_05305PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	472.2940673828125	2	472.276575	942.538597	-0.51525	-0.00024334	4.1944	0.0019809	3.6792	0.0017376	472.2781977648258	94.639	0.39085	93.54	93.361	93.752	-1.0995					9	7	2	0	0	0	0.027279	1	8494	8494		71.296	15.791	1	9833			36804	34502	30326	30352	40211	40211					0.06502938211713172
LVQSLWKSVW	10	Unmodified	_LVQSLWKSVW_					0	0	0		L1PA3_dup2401|chr4:19593708-19594375:+|1.878456162297772|0.00841233674922|7.8|426.0|11|2|sense	L1PA3_dup2401|chr4:19593708-19594375:+|1.878456162297772|0.00841233674922|7.8|426.0|11|2|sense	L1PA3_dup2401|chr4:19593708-19594375:+|1.878456162297772|0.00841233674922|7.8|426.0|11|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	623.2739868164062	2	623.353148	1244.69174	1.5038	0.0009374	2.2584	0.0014078	3.7622	0.0023452	623.3541902701986	120	0.57504	120	119.65	120.23	0					22	12	2	0	0	0	0.026602	1	13736	13736		47.96	0	1	104700			36805	14684	30327	30353	40212	40212					0.07918553328181588
LVQSPLGGVA	10	Unmodified	_LVQSPLGGVA_					0	0	0			REV__ENST00000491375.1_1_7:4822973-4823147:+|nuORF	REV__ENST00000491375.1_1_7:4822973-4823147:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	470.302734375	2	470.776742	939.538931	0.02878	1.3549E-05	-0.96823	-0.00045582	-0.93945	-0.00044227	470.77587101993663	110.45	0.54335	110.28	110.01	110.55	-0.17237					13	10	2	0	0	0	0.026714	1	10367	10367		28.081	7.1346	1	14228	+		36806	26673	30328	30354	40213	40213					0.0667435793156983
LVQSPSRGKW	10	Unmodified	_LVQSPSRGKW_					0	0	0		tr|A0A0J1I7L7|A0A0J1I7L7_NIACIAlkalinephosphataseOS=NialliacirculansOX=1397GN=ABW02_22435PE=4SV=1	tr|A0A0J1I7L7|A0A0J1I7L7_NIACIAlkalinephosphataseOS=NialliacirculansOX=1397GN=ABW02_22435PE=4SV=1	tr|A0A0J1I7L7|A0A0J1I7L7_NIACIAlkalinephosphataseOS=NialliacirculansOX=1397GN=ABW02_22435PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	579.3223266601562	2	579.324922	1156.63529	-1.5587	-0.00090299	-2.076	-0.0012027	-3.6347	-0.0021057	579.3236686827205	50.2	1.538	47.406	47.033	48.571	-2.794					84	30	4	0	0	0	0.69073	1	3225	3225		31.53	2.3598	1	611210			36807	32979	30329	30355	40214	40214					0.06323925491528826
LVQTRRWFYLD	11	Unmodified	_LVQTRRWFYLD_					0	0	0			REV__ENST00000593477.1_1_19:41312411-41313222:+|nuORF	REV__ENST00000593477.1_1_19:41312411-41313222:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.8962097167969	3	499.605137	1495.79358	-0.36356	-0.00018164	2.2514	0.0011248	1.8878	0.00094318	499.6062718567075	73.323	1.2389	70.836	70.282	71.521	-2.4873					48	22	4	0	0	0	0.02595	1	3585	3585		39.873	13.981	1	45591	+		36808	27965	30330	30356	40215	40215					0.06551799679937176
LVQVEAMKP	9	Unmodified	_LVQVEAMKP_					0	0	0			REV__ENST00000479992.5_1_19:49990877-49993604:+|nuORF	REV__ENST00000479992.5_1_19:49990877-49993604:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7882080078125	2	507.786253	1013.55795	-0.71966	-0.00036543	3.9476	0.0020045	3.2279	0.0016391	507.78818211844305	46.857	1.6349	44.147	43.646	45.281	-2.7097					89	32	4	0	0	0	0.51865	1	2813	2813		40.778	5.1599	1	755080	+		36809	26448	30331	30357	40216	40216					0.05171571230960126
LVQWLQEL	8	Unmodified	_LVQWLQEL_					0	0	0		nc|ENSG00000142733|O95382-3|MAP3K6;ENSG00000142733|ENST00000357582|MAP3K6;ENST00000470890.1_1_1:27681884-27683265:-|nuORF	nc|ENSG00000142733|O95382-3|MAP3K6	nc|ENSG00000142733|O95382-3|MAP3K6	MULTI-MSMS	OvCa99_classI_Rep5	1	514.7916259765625	2	514.792392	1027.57023	2.1022	0.0010822	2.9658	0.0015268	5.0681	0.002609	514.7903154902508	99.647	1.1264	99.647	99.276	100.4	0					55	26	4	0	0	0	0.38598	2	11033	11016;11033		90.777	5.8611	1	6641700			36810	4994	30332	30358	40217;40218	40218					0.05754930965645144
LVRALDIAPVE	11	Unmodified	_LVRALDIAPVE_					0	0	0			REV__nc|ENSG00000169347|P55259-4|GP2	REV__nc|ENSG00000169347|P55259-4|GP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	598.3524780273438	2	598.355888	1194.69722	1.1372	0.00068044	-3.5121	-0.0021015	-2.3749	-0.001421	598.3529238644488	114.3	1.3388	112.86	112.34	113.67	-1.4461					60	25	4	0	0	0	0.5466	1	10648	10648		49.536	1.5765	1	249520	+		36811	21456	30333	30359	40219	40219					0.10766232119999586
LVRDLRPAH	9	Unmodified	_LVRDLRPAH_					0	0	0		nc|ENSG00000183250|P58512-2|LINC01547;nc|ENSG00000183250|P58512|LINC01547;ENST00000330551.3_1_21:46354729-46357558:-|nuORF;nc|ENSG00000183250|P58512-3|LINC01547	nc|ENSG00000183250|P58512-2|LINC01547	nc|ENSG00000183250|P58512-2|LINC01547	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.8114013671875	2	538.819807	1075.62506	-0.75667	-0.00040771	1.6787	0.00090453	0.92205	0.00049682	538.8205541336522	104.61	0.59032	104.61	104.32	104.91	0					30	13	3	0	0	0	0.027462	1	11746	11746		24.203	4.206	1	1222400			36812	10434	30334	30360	40220	40220					0.09027362556935259
LVRDPRGIL	9	Unmodified	_LVRDPRGIL_					0	0	0		ENSG00000175264|ENST00000308064|CHST1	ENSG00000175264|ENST00000308064|CHST1	ENSG00000175264|ENST00000308064|CHST1	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.3033447265625	2	519.824558	1037.63456	1.6434	0.00085427	4.3097	0.0022403	5.9531	0.0030946	519.8264612235225	76.805	1.5206	76.805	76.324	77.844	0					52	36	2	0	0	0	0.027462	1	7754	7754		11.511	0	1	251740			36813	7529	30335	30361	40221	40221					0.11725130842478393
LVRERYCLLF	10	Unmodified	_LVRERYCLLF_					0	0	0			REV__ENSG00000188760|ENST00000373883|TMEM198	REV__ENSG00000188760|ENST00000373883|TMEM198	MULTI-SECPEP	OvCa99_classI_Rep5	1	437.2752380371094	3	437.912914	1310.71691	0.5434	0.00023796	0.66771	0.0002924	1.2111	0.00053036	437.91307867183275	65.347	0.59789	65.347	65.15	65.748	0					35	14	3	0	0	0	0.027165	1	6042	6042		20.03	7.5976	1	1525800	+		36814	22734	30336	30362	40222	40222					0.07398284859095838
LVRERYCLLFI	11	Unmodified	_LVRERYCLLFI_					0	0	0			REV__ENSG00000188760|ENST00000373883|TMEM198	REV__ENSG00000188760|ENST00000373883|TMEM198	MULTI-MSMS	OvCa99_classI_Rep5	1	475.6100158691406	3	475.607602	1423.80098	1.6958	0.00080653	2.452	0.0011662	4.1477	0.0019727	475.60868254683135	79.432	0.7515	79.432	79.119	79.87	0					48	18	4	0	0	0	0.70032	1	8087	8087		29.551	5.3189	1	4723500	+		36815	22734	30337	30363	40223	40223					0.10602815956008271
LVRERYCLLFI	11	Unmodified	_LVRERYCLLFI_					0	0	0			REV__ENSG00000188760|ENST00000373883|TMEM198	REV__ENSG00000188760|ENST00000373883|TMEM198	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	475.607602	1423.80098	1.6958	0.00080653	2.452	0.0011662	4.1477	0.0019727	475.60868254683135	79.432	0.7515	79.432	79.119	79.87	0	0	0	NaN	29.551	48	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4723500	+		36816	22734	30337	30363							0.10602815956008271
LVRETVTVN	9	Unmodified	_LVRETVTVN_					0	0	0			REV__ENSG00000046604|ENST00000261590|DSG2	REV__ENSG00000046604|ENST00000261590|DSG2	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.7739868164062	2	515.798206	1029.58186	0.2676	0.00013803	2.6009	0.0013416	2.8685	0.0014796	515.7992201177545	107.91	1.9124	107.69	107.15	109.06	-0.22498					66	38	2	0	0	0	0.027418	1	10243	10243		65.465	0	1	78626	+		36817	16651	30338	30364	40224	40224					0.06825127989009161
LVRFLFGF	8	Unmodified	_LVRFLFGF_					0	0	0		ENST00000268483.7_1_16:72127358-72127508:-|nuORF	ENST00000268483.7_1_16:72127358-72127508:-|nuORF	ENST00000268483.7_1_16:72127358-72127508:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.3370666503906	2	499.794738	997.574923	-0.61877	-0.00030926	4.2191	0.0021087	3.6003	0.0017994	499.7964396914468	35.23	0.2872	35.23	35.052	35.339	0					11	5	3	0	0	0	0.028476	1	1768	1768		35.201	6.9464	1	36114			36818	9973	30339	30365	40225	40225					0.07603859899086274
LVRGEWRA	8	Unmodified	_LVRGEWRA_					0	0	0			REV__ENST00000416860.2_2_1:2487653-2488061:-|nuORF	REV__ENST00000416860.2_2_1:2487653-2488061:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3011169433594	2	493.780151	985.545748	-1.0212	-0.00050423	-0.19218	-9.4892E-05	-1.2133	-0.00059913	493.77997240755036	94.125	0.81335	92.23	91.898	92.712	-1.8956					28	15	2	0	0	0	0.028476	1	6091	6091		40.573	0	1	228540	+		36819	25554	30340	30366	40226	40226					0.05239715602795059
LVRGIRKQLI	10	Unmodified	_LVRGIRKQLI_					0	0	0		ENSG00000104369|ENST00000342232|JPH1	ENSG00000104369|ENST00000342232|JPH1	ENSG00000104369|ENST00000342232|JPH1	MULTI-SECPEP	OvCa9_classI_Rep3	3	598.3150634765625	2	598.403507	1194.79246	1.3917	0.00083281	-1.3441	-0.00080434	0.047575	2.8469E-05	598.9043361932727	108.71	0.14969	107.51	107.41	107.56	-1.1978					4	2	2	0	0	0	0.027147	1	7780	7780		15.642	0	1	10979			36820	2372	30341	30367	40227	40227					0.2028563010169364
LVRGLTSFA	9	Unmodified	_LVRGLTSFA_					0	0	0			REV__ENST00000462030.5_1_3:148847510-148847732:+|nuORF	REV__ENST00000462030.5_1_3:148847510-148847732:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	482.2842712402344	2	482.284734	962.554916	1.4873	0.00071731	-1.7499	-0.00084393	-0.26255	-0.00012662	482.2838148117403	88.658	2.4683	87.29	86.839	89.307	-1.3676					116	49	4	0	0	0	0.38529	1	7805	7805		53.351	2.016	1	1008100	+		36821	20884	30342	30368	40228	40228					0.07214064168454115
LVRGPVSLF	9	Unmodified	_LVRGPVSLF_					0	0	0			REV__ENSG00000184571|ENST00000616349|PIWIL3	REV__ENSG00000184571|ENST00000616349|PIWIL3	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.81573486328125	2	494.302927	986.591301	1.0579	0.0005229	-2.4936	-0.0012326	-1.4357	-0.00070969	494.3015460462658	111.05	1.5451	109.94	109.55	111.09	-1.1038					62	30	3	0	0	0	0.027462	1	8017	8017		26.693	7.3329	1	41336	+		36822	22440	30343	30369	40229	40229					0.09746941065168357
LVRGQCSPN	9	Carbamidomethyl (C)	_LVRGQC(Carbamidomethyl (C))SPN_	LVRGQC(1)SPN		LVRGQC(51)SPN		0	1	0		ENST00000395867.7_3_10:38120565-38120739:-|nuORF	ENST00000395867.7_3_10:38120565-38120739:-|nuORF	ENST00000395867.7_3_10:38120565-38120739:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	515.7591552734375	2	515.758558	1029.50256	1.669	0.00086082	1.7512	0.0009032	3.4202	0.001764	515.759338830879	127.24	1.6255	126.17	125.91	127.54	-1.0715					72	31	4	0	0	0	0.40667	1	9973	9973		51.335	8.861	1	296160			36823	11303	30344	30370	40230	40230	118				-0.011008422368149695
LVRGTLKSSG	10	Unmodified	_LVRGTLKSSG_					0	0	0			REV__nc|ENSG00000101940|Q9H1Z4-2|WDR13	REV__nc|ENSG00000101940|Q9H1Z4-2|WDR13	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.30670166015625	2	509.306198	1016.59784	-1.8721	-0.00095349	1.486	0.0007568	-0.38619	-0.00019669	509.306823448672	147.28	1.1942	145.84	145.53	146.73	-1.4351					49	23	3	0	0	0	0.72319	1	14508	14508		27.882	2.4321	1	91709	+		36824	17527	30345	30371	40231	40231					0.09020834225896124
LVRISHEII	9	Unmodified	_LVRISHEII_					0	0	0		tr|A0A7D6ZEQ3|A0A7D6ZEQ3_9CLOTBifunctionalproteinPyrROS=ClostridiumintestinaleOX=36845GN=pyrRPE=3SV=1	tr|A0A7D6ZEQ3|A0A7D6ZEQ3_9CLOTBifunctionalproteinPyrROS=ClostridiumintestinaleOX=36845GN=pyrRPE=3SV=1	tr|A0A7D6ZEQ3|A0A7D6ZEQ3_9CLOTBifunctionalproteinPyrROS=ClostridiumintestinaleOX=36845GN=pyrRPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3353271484375	2	540.332216	1078.64988	0.71528	0.00038649	2.8501	0.00154	3.5654	0.0019265	540.3335173912039	131.44	2.5576	130.32	129.91	132.47	-1.1249					119	51	4	0	0	0	0.42676	1	10529	10529		49.442	8.6634	1	239410			36825	35486	30346	30372	40232	40232					0.11369997639667417
LVRKPEIL	8	Unmodified	_LVRKPEIL_					0	0	0		tr|A0A7D6VRR4|A0A7D6VRR4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07955PE=4SV=1	tr|A0A7D6VRR4|A0A7D6VRR4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07955PE=4SV=1	tr|A0A7D6VRR4|A0A7D6VRR4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07955PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	484.3184509277344	2	484.318577	966.622602	-0.15674	-7.5911E-05	0.29268	0.00014175	0.13594	6.584E-05	484.3185907532153	114.55	1.2339	114.43	114.16	115.39	-0.11777					49	24	3	0	0	0	0.64026	1	10908	10908		55.504	5.4797	1	168710			36826	34951	30347	30373	40233	40233					0.13795514099274442
LVRKRSGG	8	Unmodified	_LVRKRSGG_					0	0	0			REV__ENSG00000130702|ENST00000252999|LAMA5	REV__ENSG00000130702|ENST00000252999|LAMA5	MULTI-MSMS	OvCa9_classI_Rep2	2	436.7743225097656	2	436.774868	871.535184	-1.3218	-0.00057733	1.2921	0.00056437	-0.029689	-1.2967E-05	436.77534043072393	144.04	2.131	143.81	143.2	145.33	-0.22697					119	42	4	0	0	0	0.73626	3	14456	14456;14462;14474		33.516	6.7195	1	537180	+		36827	18961	30348	30374	40234;40235;40236	40234					0.09427732948381617
LVRLAPLL	8	Unmodified	_LVRLAPLL_					0	0	0			REV__ENST00000264094.7_1_2:74779660-74781057:-|nuORF	REV__ENST00000264094.7_1_2:74779660-74781057:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	447.8096923828125	2	447.810388	893.606223	2.7892	0.001249	-2.8374	-0.0012706	-0.048227	-2.1597E-05	447.80901078809313	136.31	1.365	134.77	134.4	135.76	-1.5437					55	27	3	0	0	0	0.69415	1	13213	13213		44.531	0	1	73419	+		36828	24012	30349	30375	40237	40237					0.1551643293316829
LVRLSGRLL	9	Unmodified	_LVRLSGRLL_					0	0	0			REV__ENSG00000115361|ENST00000233710|ACADL	REV__ENSG00000115361|ENST00000233710|ACADL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.8165283203125	2	513.842751	1025.67095	-0.13757	-7.0691E-05	0.31307	0.00016087	0.1755	9.018E-05	514.3440110958484	75.973	0.14381	73.034	72.936	73.08	-2.9389					4	2	2	0	0	0	0.027455	1	5998	5998		26.693	13.734	1	11739	+		36829	18239	30350	30376	40238	40238					0.15914007739161207
LVRNHQLF	8	Unmodified	_LVRNHQLF_					0	0	0			REV__chr20:47005084-47072185|343|39.78|0.47|6.42|+|1|EYA2,EYA2|1	REV__chr20:47005084-47072185|343|39.78|0.47|6.42|+|1|EYA2,EYA2|1	MULTI-MSMS	OvCa9_classI_Rep2	2	513.7955322265625	2	513.795801	1025.57705	1.1497	0.00059072	-2.7018	-0.0013882	-1.5521	-0.00079747	513.7943176644559	127.87	1.1843	127.65	127.29	128.48	-0.22697					49	23	3	0	0	0	0.72922	1	12517	12517		37.028	1.8278	1	153960	+		36830	16018	30351	30377	40239	40239					0.06528288636877733
LVRPKHIGM	9	Unmodified	_LVRPKHIGM_					0	0	0			REV__ENST00000602629.1_1_2:171225816-171400468:+|nuORF	REV__ENST00000602629.1_1_2:171225816-171400468:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2779541015625	2	525.815679	1049.6168	0.97511	0.00051273	-3.077	-0.0016179	-2.1019	-0.0011052	526.3156937194743	144.46	0.43655	144.46	144.21	144.64	0					11	8	2	0	0	0	0.027462	1	16876	16876		30.504	0	1	29485	+		36831	28044	30352	30378	40240	40240					0.09398092315950635
LVRPNTRNRA	10	Unmodified	_LVRPNTRNRA_					0	0	0		nc|ENSG00000204183|Q5U4N7|GDF5-AS1	nc|ENSG00000204183|Q5U4N7|GDF5-AS1	nc|ENSG00000204183|Q5U4N7|GDF5-AS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.31884765625	2	598.85217	1195.68979	2.7141	0.0016254	3.2067	0.0019203	5.9208	0.0035457	598.8541301810442	107.62	0.20715	107.62	107.44	107.65	0					6	4	2	0	0	0	0.027174	1	12127	12127		20.947	3.582	1	156870			36832	15266	30353	30379	40241	40241					0.09976937362944227
LVRPSGSASLL	11	Unmodified	_LVRPSGSASLL_					0	0	0			REV__ENST00000357575.8_1_18:77662980-77663301:-|nuORF	REV__ENST00000357575.8_1_18:77662980-77663301:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	550.32568359375	2	550.327131	1098.63971	-0.25059	-0.0001379	-0.34715	-0.00019105	-0.59774	-0.00032895	550.3269039710714	83.949	1.6656	82.403	81.784	83.449	-1.5462					94	32	4	0	0	0	0.59615	1	7230	7230		45.022	6.2161	1	662850	+		36833	24786	30354	30380	40242	40242					0.09433389914443069
LVRQFTSL	8	Unmodified	_LVRQFTSL_					0	0	0			REV__TFAP2D|p.T400R|1|0.1|ENSG00000008197|chr6:50772704-50772704|C/G|missense_variant	REV__TFAP2D|p.T400R|1|0.1|ENSG00000008197|chr6:50772704-50772704|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	482.28466796875	2	482.284734	962.554916	1.4873	0.00071731	-1.7499	-0.00084393	-0.26255	-0.00012662	482.2838148117403	88.658	2.4683	87.29	86.839	89.307	-1.3676					116	49	4	0	0	0	0.7224	1	7759	7759		38.806	1.647	1	1008100	+		36834	29493	30355	30381	40243	40243					0.07214064168476853
LVRQRCQEN	9	Unmodified	_LVRQRCQEN_					0	0	0		ENST00000360003.7_1_10:121591059-121591560:-|nuORF	ENST00000360003.7_1_10:121591059-121591560:-|nuORF	ENST00000360003.7_1_10:121591059-121591560:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	573.265625	2	573.295839	1144.57712	-1.1935	-0.00068424	0.50603	0.0002901	-0.68748	-0.00039413	573.2958829186932	75.836	1.6029	73.465	73.164	74.767	-2.3715					59	30	3	0	0	0	0.027411	1	3849	3849		64.207	0	1	100110			36835	10764	30356	30382	40244	40244					0.010619205746024818
LVRRILLL	8	Unmodified	_LVRRILLL_					0	0	0		ENST00000455532.5_1_20:13567980-13605857:-|nuORF	ENST00000455532.5_1_20:13567980-13605857:-|nuORF	ENST00000455532.5_1_20:13567980-13605857:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.333740234375	2	498.358037	994.701521	-0.0087378	-4.3545E-06	2.998	0.0014941	2.9893	0.0014897	498.35848132414145	123.5	0.24424	123.26	123.14	123.39	-0.23193					5	4	2	0	0	0	0.028476	1	11998	11998		52.299	0	1	7571.3			36836	12097	30357	30383	40245	40245					0.20395786124220194
LVRRLKAGV	9	Unmodified	_LVRRLKAGV_					0	0	0		ENSG00000123454|ENST00000393056|DBH	ENSG00000123454|ENST00000393056|DBH	ENSG00000123454|ENST00000393056|DBH	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.79193115234375	2	506.342918	1010.67128	-0.94973	-0.00048089	0.6616	0.00033499	-0.28814	-0.0001459	506.34315649006754	47.587	1.1417	44.877	44.588	45.729	-2.7097					36	22	3	0	0	0	0.027462	1	2977	2977		24.203	4.8428	1	39005			36837	3595	30358	30384	40246	40246					0.16637427459022547
LVRRQQAQPK	10	Unmodified	_LVRRQQAQPK_					0	0	0			REV__ENST00000435915.1_1_9:107689933-107690068:+|nuORF	REV__ENST00000435915.1_1_9:107689933-107690068:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	612.372802734375	2	612.370195	1222.72584	1.9172	0.0011741	0.98244	0.00060162	2.8997	0.0017757	612.3708423993967	138.65	0.55046	137.12	136.83	137.38	-1.5284					16	11	2	0	0	0	0.72319	1	13503	13503		27.882	3.3631	1	27901	+		36838	25777	30359	30385	40247	40247					0.12338394539779074
LVRRQQAQPK	10	Unmodified	_LVRRQQAQPK_					0	0	0			REV__ENST00000435915.1_1_9:107689933-107690068:+|nuORF	REV__ENST00000435915.1_1_9:107689933-107690068:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	612.370195	1222.72584	-0.14849	-9.0931E-05	3.7347	0.002287	3.5862	0.0021961	612.373041614233	138.23	1.2751	137.17	136.7	137.98	-1.0595	0.027918	0.002451	NaN	27.882	32	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15825	+		36839	25777	30359	30385							0.12338394539779074
LVRSFPKLT	9	Unmodified	_LVRSFPKLT_					0	0	0			REV__nc|ENSG00000121933|P0DMS9|TMIGD3	REV__nc|ENSG00000121933|P0DMS9|TMIGD3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.302001953125	2	530.829309	1059.64407	-3.0723	-0.0016309	1.6995	0.00090214	-1.3728	-0.00072873	530.8304043691279	107.92	0.4346	106.04	105.88	106.31	-1.8785					11	8	2	0	0	0	0.027462	1	9863	9863		31.53	7.3271	1	16864	+		36840	18567	30360	30386	40248	40248					0.11662899127986748
LVRSSIQSH	9	Unmodified	_LVRSSIQSH_					0	0	0			REV__chr8:91197524-91200613|99|17.84|0.22|6.31|+|1|TE_info:L1PA3,L1PA3_dup5484,L1,LINE,donor,-,91191845,91197524|None,LRRC69|109	REV__chr8:91197524-91200613|99|17.84|0.22|6.31|+|1|TE_info:L1PA3,L1PA3_dup5484,L1,LINE,donor,-,91191845,91197524|None,LRRC69|109	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.7884521484375	2	513.788173	1025.56179	-0.3471	-0.00017834	-0.55861	-0.00028701	-0.90571	-0.00046534	513.7878714786193	39.389	2.2851	36.463	35.948	38.233	-2.9264					123	44	5	0	0	0	0.62352	1	1683	1683		29.15	0	1	2914100	+		36841	16117	30361	30387	40249	40249					0.05003377049047231
LVRTELLEGLL	11	Unmodified	_LVRTELLEGLL_					0	0	0			REV__nc|ENSG00000255221|Q5XLA6|CARD17P	REV__nc|ENSG00000255221|Q5XLA6|CARD17P	MSMS	OvCa9_classI_Rep4_	4	628.3826904296875	2	628.384645	1254.75474	NaN	NaN	NaN	NaN	NaN	NaN	NaN	150.91	1	149.48	148.98	149.98	-1.4344								0	0	0	0.19441	1	14913	14913		31.53	7.0106	1		+		36842	29176	30362	30388	40250	40250					0.13755074325581518
LVRTPAQARR	10	Unmodified	_LVRTPAQARR_					0	0	0			REV__ENST00000584516.5_1_17:73585822-73586164:+|nuORF	REV__ENST00000584516.5_1_17:73585822-73586164:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	584.356201171875	2	584.357088	1166.69962	-2.312	-0.0013511	1.1487	0.00067126	-1.1633	-0.0006798	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.79213	1	14770	14770		19.997	1.6724	1	180810	+		36843	27844	30363	30389	40251	40251					0.12294125368293862
LVRTRHLKE	9	Unmodified	_LVRTRHLKE_					0	0	0			REV__ENST00000588075.5_3_17:76993904-76996331:-|nuORF	REV__ENST00000588075.5_3_17:76993904-76996331:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	576.3544311523438	2	576.354014	1150.69348	-0.29031	-0.00016732	-0.5669	-0.00032673	-0.85721	-0.00049406	576.3537371528553	71.759	4.075	69.252	68.91	72.985	-2.5071					188	77	5	0	0	0	0.51865	1	5811	5811		40.778	6.6056	1	5146300	+		36844	27869	30364	30390	40252	40252					0.1241560713679064
LVRVELPA	8	Unmodified	_LVRVELPA_					0	0	0			REV__nc|ENSG00000136068|O75369-8|FLNB	REV__nc|ENSG00000136068|O75369-8|FLNB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	449.2749938964844	2	448.781828	895.549102	-0.16182	-7.2623E-05	-0.66517	-0.00029852	-0.82699	-0.00037114	448.78147215545204	93.606	0.71907	91.099	90.813	91.532	-2.5072					20	15	2	0	0	0	0.028476	1	8146	8146		45.952	8.7928	1	106380	+		36845	19356	30365	30391	40253	40253					0.09714965656803543
LVRVELPA	8	Unmodified	_LVRVELPA_					0	0	0			REV__nc|ENSG00000136068|O75369-8|FLNB	REV__nc|ENSG00000136068|O75369-8|FLNB	MULTI-MATCH	OvCa9_classI_Rep2	2		2	448.781828	895.549102	3.0846	0.0013843	-3.4137	-0.001532	-0.32902	-0.00014766	448.78039731322565	92.33	1.0348	91.162	90.919	91.953	-1.168	-0.029842	-0.0020686	NaN	45.952	42	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94095	+		36846	19356	30365	30391							0.09714965656803543
LVRVLGRLV	9	Unmodified	_LVRVLGRLV_					0	0	0			REV__ENSG00000049769|ENST00000055335|PPP1R3F	REV__ENSG00000049769|ENST00000055335|PPP1R3F	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.279052734375	2	512.853119	1023.69168	2.9418	0.0015087	-0.80065	-0.00041061	2.1412	0.0010981	512.8525880054339	97.837	1.0728	97.837	97.479	98.552	0					53	24	4	0	0	0	0.027462	1	10835	10835		12.207	0	1	1631900	+		36847	16680	30366	30392	40254	40254					0.18078598118847822
LVRVRHELIH	10	Unmodified	_LVRVRHELIH_					0	0	0			REV__ENST00000463795.5_1_22:30682689-30685486:-|nuORF	REV__ENST00000463795.5_1_22:30682689-30685486:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	424.59466552734375	3	424.594684	1270.76222	1.2652	0.00053719	-1.1421	-0.00048494	0.12307	5.2255E-05	424.5941494452476	69.038	2.2056	66.224	65.914	68.119	-2.8144					114	43	4	0	0	0	0.73063	1	3050	3050		27.047	4.4857	1	346080	+		36848	23428	30367	30393	40255	40255					0.1376727143649532
LVRVYFRL	8	Unmodified	_LVRVYFRL_					0	0	0			REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	REV__nc|ENSG00000099991|Q9Y6J0-2|CABIN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.7797241210938	2	533.332019	1064.64948	-2.2637	-0.0012073	0.93235	0.00049725	-1.3314	-0.00071006	533.3318291906717	72.548	0.29105	69.152	69.058	69.349	-3.3961					10	5	3	0	0	0	0.028476	1	5577	5577		35.201	6.9464	1	16678	+		36849	17348	30368	30394	40256	40256					0.11974622710454241
LVRVYVPK	8	Unmodified	_LVRVYVPK_					0	0	0		AADAC|p.F378Sfs*10|1|0.09|ENSG00000114771|chr3:151828103-151828104|-/AGTGATCTATCAGTGG|frameshift_variant;ENSG00000114771|ENST00000232892|AADAC	AADAC|p.F378Sfs*10|1|0.09|ENSG00000114771|chr3:151828103-151828104|-/AGTGATCTATCAGTGG|frameshift_variant	AADAC|p.F378Sfs*10|1|0.09|ENSG00000114771|chr3:151828103-151828104|-/AGTGATCTATCAGTGG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.28131103515625	2	487.313295	972.612037	0.44125	0.00021503	3.1764	0.0015479	3.6177	0.0017629	487.3148966938597	96.874	0.48889	95.915	95.678	96.167	-0.95857					13	9	2	0	0	0	0.028476	1	8769	8769		35.201	10.998	1	30512			36850	0	30369	30395	40257	40257					0.12463531444836917
LVRWLKVN	8	Unmodified	_LVRWLKVN_					0	0	0		ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	ENSG00000155097|ENST00000518738|ATP6V1C1	MULTI-SECPEP	OvCa9_classI_Rep3	3	514.2867431640625	2	514.324194	1026.63383	0.91673	0.0004715	-3.1093	-0.0015992	-2.1926	-0.0011277	514.3226774482685	129.7	0.39571	128.59	128.39	128.78	-1.1121					10	7	2	0	0	0	0.028476	1	10280	10280		26.796	10.323	1	8571.1			36851	5770	30370	30396	40258	40258					0.12158336193419927
LVRWPSPRHRQ	11	Unmodified	_LVRWPSPRHRQ_					0	0	0			REV__ENST00000601438.2_1_19:47725061-47725277:-|nuORF	REV__ENST00000601438.2_1_19:47725061-47725277:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	477.9405212402344	3	477.940855	1430.80073	-0.40384	-0.00019301	-1.1015	-0.00052646	-1.5054	-0.00071947	477.94034511259724	45.725	1.1969	43.015	42.747	43.943	-2.7097					72	23	4	0	0	0	0.69308	1	2687	2687		32.034	7.7582	1	323790	+		36852	17710	30371	30397	40259	40259					0.10256577071027095
LVSARQVAR	9	Unmodified	_LVSARQVAR_					0	0	0			REV__ENST00000380711.3_1_22:51021469-51022136:+|nuORF	REV__ENST00000380711.3_1_22:51021469-51022136:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	500.3041687011719	2	500.306532	998.598512	-0.5363	-0.00026831	-3.8094	-0.0019059	-4.3457	-0.0021742	500.3045159624648	95.321	1.6372	94.293	93.873	95.51	-1.0281					71	32	3	0	0	0	0.28934	1	8587	8587		64.207	8.7031	1	718460	+		36853	25184	30372	30398	40260	40260					0.09915673665602753
LVSEEEEDE	9	Unmodified	_LVSEEEEDE_					0	0	0		nc|ENSG00000164649|Q96GN5-5|CDCA7L;nc|ENSG00000164649|Q96GN5-4|CDCA7L;nc|ENSG00000164649|Q96GN5-2|CDCA7L;ENSG00000164649|ENST00000406877|CDCA7L	nc|ENSG00000164649|Q96GN5-5|CDCA7L	nc|ENSG00000164649|Q96GN5-5|CDCA7L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.2447509765625	2	539.724766	1077.43498	1.3807	0.00074522	-1.256	-0.00067787	0.12479	6.7351E-05	539.7235193158295	130.03	0.59412	128.55	128.31	128.91	-1.478					19	11	2	0	0	0	0.027462	1	12451	12451		29.15	7.1897	1	17620			36854	6473	30373	30399	40261	40261					-0.100640584772691
LVSEQLVEV	9	Unmodified	_LVSEQLVEV_					0	0	0			REV__ENST00000527986.5_1_10:28813506-28821653:-|nuORF	REV__ENST00000527986.5_1_10:28813506-28821653:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	508.2837219238281	2	508.28714	1014.55973	-1.2986	-0.00066006	0.87257	0.00044352	-0.42603	-0.00021654	508.28754592684936	82.752	1.5048	80.456	79.938	81.443	-2.2963					63	30	4	0	0	0	0.053172	1	4689	4689		116.9	4.4927	1	1197000	+		36855	27162	30374	30400	40262	40262					0.05302903520578184
LVSFPRII	8	Unmodified	_LVSFPRII_					0	0	0			REV__nc|ENSG00000138399|Q53R41-2|FASTKD1	REV__nc|ENSG00000138399|Q53R41-2|FASTKD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.7986145019531	2	472.80002	943.585488	0.54834	0.00025925	-0.52606	-0.00024872	0.022274	1.0531E-05	472.7995399702243	116.79	0.8901	115.43	115.14	116.03	-1.3645					35	16	3	0	0	0	0.71369	1	10926	10926		40.573	3.5441	1	96234	+		36856	19538	30375	30401	40263	40263					0.1114384255350842
LVSFVWTK	8	Unmodified	_LVSFVWTK_					0	0	0			REV__nc|ENSG00000100427|Q15049-2|MLC1	REV__nc|ENSG00000100427|Q15049-2|MLC1	MULTI-SECPEP	OvCa9_classI_Rep3	3	490.7748107910156	2	490.284203	978.553853	-1.1864	-0.00058169	2.1405	0.0010494	0.95403	0.00046775	490.2830738606198	91.281	0.45409	89.257	89.029	89.483	-2.0241					11	8	2	0	0	0	0.028476	1	5713	5713		52.299	24.045	1	7896.5	+		36857	17417	30376	30402	40264	40264					0.06371849799563734
LVSHLWTE	8	Unmodified	_LVSHLWTE_					0	0	0			REV__ENST00000464362.5_1_22:26875286-26875439:-|nuORF	REV__ENST00000464362.5_1_22:26875286-26875439:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.74737548828125	2	492.761092	983.507631	-0.2255	-0.00011112	-3.8177	-0.0018812	-4.0432	-0.0019923	492.7590050675706	64.52	0.66277	64.52	64.253	64.916	0					31	15	3	0	0	0	0.028476	1	5917	5917		20.482	0	1	930450	+		36858	26149	30377	30403	40265	40265					0.015217848974543813
LVSIFAYDA	9	Unmodified	_LVSIFAYDA_					0	0	0		nc|ENSG00000166091|Q96DZ9-4|CMTM5;nc|ENSG00000166091|Q96DZ9-5|CMTM5;nc|ENSG00000166091|Q96DZ9-3|CMTM5;nc|ENSG00000166091|Q96DZ9-6|CMTM5;ENST00000553750.1_1_14:23847503-23848693:+|nuORF;nc|ENSG00000166091|Q96DZ9-2|CMTM5;ENSG00000166091|ENST00000339180|CMTM5	nc|ENSG00000166091|Q96DZ9-4|CMTM5	nc|ENSG00000166091|Q96DZ9-4|CMTM5	MULTI-MSMS	OvCa9_classI_Rep2	2	499.7646179199219	2	499.7633	997.512048	0.42626	0.00021303	3.0681	0.0015333	3.4943	0.0017463	499.76512722989173	126.31	4.05	126.07	125.5	129.55	-0.2359					192	81	3	0	0	0	0.36502	1	12412	12412		55.504	0.73953	1	11682000			36859	6636	30378	30404	40266	40266					0.013192493203632694
LVSIFAYDA	9	Unmodified	_LVSIFAYDA_					0	0	0		nc|ENSG00000166091|Q96DZ9-4|CMTM5;nc|ENSG00000166091|Q96DZ9-5|CMTM5;nc|ENSG00000166091|Q96DZ9-3|CMTM5;nc|ENSG00000166091|Q96DZ9-6|CMTM5;ENST00000553750.1_1_14:23847503-23848693:+|nuORF;nc|ENSG00000166091|Q96DZ9-2|CMTM5;ENSG00000166091|ENST00000339180|CMTM5	nc|ENSG00000166091|Q96DZ9-4|CMTM5	nc|ENSG00000166091|Q96DZ9-4|CMTM5	MULTI-MSMS	OvCa9_classI_Rep3	3	499.7652893066406	2	499.7633	997.512048	0.8461	0.00042285	2.5175	0.0012581	3.3636	0.001681	499.7649286167221	127.27	5.5139	126.2	124.35	129.86	-1.0715					229	108	5	0	0	0	0.38529	1	10066	10066		53.351	3.3269	1	11725000			36860	6636	30378	30404	40267	40267					0.013192493203632694
LVSIFKNKN	9	Unmodified	_LVSIFKNKN_					0	0	0		tr|A0A7D6VQB5|A0A7D6VQB5_9CLOTTetratricopeptiderepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22555PE=4SV=1	tr|A0A7D6VQB5|A0A7D6VQB5_9CLOTTetratricopeptiderepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22555PE=4SV=1	tr|A0A7D6VQB5|A0A7D6VQB5_9CLOTTetratricopeptiderepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22555PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	531.817138671875	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.68424	1	13984	13984		21.96	1.013	1	166960			36861	34836	30379	30405	40268	40268					0.09498308748334239
LVSIYYKE	8	Unmodified	_LVSIYYKE_					0	0	0		tr|A0A7D6VTC2|A0A7D6VTC2_9CLOTTrkHfamilypotassiumuptakeproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16710PE=3SV=1	tr|A0A7D6VTC2|A0A7D6VTC2_9CLOTTrkHfamilypotassiumuptakeproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16710PE=3SV=1	tr|A0A7D6VTC2|A0A7D6VTC2_9CLOTTrkHfamilypotassiumuptakeproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16710PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.778564453125	2	507.778951	1013.54335	-1.289	-0.00065455	1.1192	0.00056832	-0.16982	-8.6233E-05	507.7793644633824	139.7	1.13	139.48	139.01	140.14	-0.22696					52	22	3	0	0	0	0.73938	1	13966	13966		31.955	0	1	77462			36862	35104	30380	30406	40269	40269					0.03711822354466676
LVSKISAVQF	10	Unmodified	_LVSKISAVQF_					0	0	0		ENST00000544307.1_1_12:20725060-20833202:+|nuORF;PDE3A|p.L997Tfs*24|1|0.05|ENSG00000172572|chr12:20654009-20654010|-/ACTGCAGCCT|frameshift_variant;ENSG00000172572|ENST00000359062|PDE3A	ENST00000544307.1_1_12:20725060-20833202:+|nuORF	ENST00000544307.1_1_12:20725060-20833202:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	546.3302612304688	2	546.326599	1090.63865	0.029432	1.608E-05	-0.58695	-0.00032067	-0.55752	-0.00030459	546.3261926719827	105.36	1.6666	104.02	103.73	105.4	-1.3482					74	31	4	0	0	0	0.20801	1	7405	7405		93.195	5.4412	1	592090			36863	7306	30381	30407	40270	40270					0.09695175545516577
LVSKKYTF	8	Unmodified	_LVSKKYTF_					0	0	0			REV__tr|A0A7D6VQR9|A0A7D6VQR9_9CLOTSDRfamilyoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22365PE=3SV=1	REV__tr|A0A7D6VQR9|A0A7D6VQR9_9CLOTSDRfamilyoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22365PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.31878662109375	2	493.289485	984.564418	0.11718	5.7801E-05	4.3181	0.0021301	4.4352	0.0021879	493.2916623809439	104.61	0.67348	103.17	102.81	103.49	-1.4347					20	12	2	0	0	0	0.028476	1	7308	7308		63.306	19.189	1	52543	+		36864	31353	30382	30408	40271	40271					0.07151832453985207
LVSLALPLD	9	Unmodified	_LVSLALPLD_					0	0	0		CELSR2-KIAA1324|1|fusion;ENSG00000143126|ENST00000271332|CELSR2	CELSR2-KIAA1324|1|fusion	CELSR2-KIAA1324|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.7880859375	2	470.789318	939.564084	-0.18553	-8.7345E-05	-3.9883	-0.0018776	-4.1738	-0.001965	470.78744487463723	40.717	3.4773	37.763	37.112	40.589	-2.9541					147	66	5	0	0	0	0.44294	1	1863	1863		47.916	1.9636	1	6500500			36865	219	30383	30409	40272	40272					0.09188412734147278
LVSLFKDTFS	10	Unmodified	_LVSLFKDTFS_					0	0	0		ENST00000518964.5_1_8:126958190-126958277:-|nuORF	ENST00000518964.5_1_8:126958190-126958277:-|nuORF	ENST00000518964.5_1_8:126958190-126958277:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	578.8560791015625	2	578.816064	1155.61758	-1.0833	-0.00062703	0.80894	0.00046823	-0.27436	-0.0001588	578.8152756364032	73.865	0.54689	71.378	70.974	71.521	-2.4873					14	10	2	0	0	0	0.026956	1	3635	3635		34.173	5.0025	1	17179			36866	13077	30384	30410	40273	40273					0.04599165445983999
LVSLHHGPK	9	Unmodified	_LVSLHHGPK_					0	0	0			REV__ENST00000343855.5_1_7:150028109-150028460:+|nuORF	REV__ENST00000343855.5_1_7:150028109-150028460:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.3055419921875	2	494.290351	986.566149	-1.0311	-0.00050968	-0.92715	-0.00045828	-1.9583	-0.00096796	494.28997877999893	100.52	0.67299	98.258	97.825	98.498	-2.2665					27	12	4	0	0	0	0.027462	1	8992	8992		23.042	1.0826	1	35623	+		36867	24673	30385	30411	40274	40274					0.07232886262602278
LVSLHHGPK	9	Unmodified	_LVSLHHGPK_					0	0	0			REV__ENST00000343855.5_1_7:150028109-150028460:+|nuORF	REV__ENST00000343855.5_1_7:150028109-150028460:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	494.290351	986.566149	-0.66183	-0.00032714	-0.99764	-0.00049312	-1.6595	-0.00082026	494.2899689281704	99.845	0.41116	98.16	97.932	98.344	-1.685	-0.048775	-5.404E-05	NaN	16.473	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24454	+		36868	24673	30385	30411							0.07232886262602278
LVSLKSLDL	9	Unmodified	_LVSLKSLDL_					0	0	0			REV__ENST00000284268.6_1_5:14710442-14710625:-|nuORF	REV__ENST00000284268.6_1_5:14710442-14710625:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.7811279296875	2	494.307875	986.601197	0.88531	0.00043762	1.7013	0.00084097	2.5866	0.0012786	494.3087128559959	91.053	0.43872	91.053	90.816	91.255	0					13	10	2	0	0	0	0.027462	1	9788	9788		25.574	0	1	345830	+		36869	24127	30386	30412	40275	40275					0.10736084279892566
LVSLKSLDL	9	Unmodified	_LVSLKSLDL_					0	0	0			REV__ENST00000284268.6_1_5:14710442-14710625:-|nuORF	REV__ENST00000284268.6_1_5:14710442-14710625:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	494.307875	986.601197	0.77857	0.00038485	-1.6187	-0.00080015	-0.84016	-0.0004153	494.30686883729436	92.494	0.6274	91.326	91.129	91.756	-1.168	0.13638	-0.0026804	NaN	23.523	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13775	+		36870	24127	30386	30412							0.10736084279892566
LVSLRRPK	8	Unmodified	_LVSLRRPK_					0	0	0			REV__nc|ENSG00000111913|Q9Y4F9|RIPOR2	REV__nc|ENSG00000111913|Q9Y4F9|RIPOR2	MULTI-SECPEP	OvCa9_classI_Rep2	2	483.8268737792969	2	484.821818	967.629084	-0.17233	-8.3548E-05	0.82012	0.00039761	0.64779	0.00031406	484.822253436176	73.218	0.83917	70.818	70.636	71.475	-2.3999					33	15	3	0	0	0	0.028476	1	5940	5940		35.201	8.4046	1	97995	+		36871	28799	30387	30413	40276	40276					0.14397452050639004
LVSNGLTGHT	10	Unmodified	_LVSNGLTGHT_					0	0	0			REV__nc|ENSG00000197891|Q96S37-3|SLC22A12	REV__nc|ENSG00000197891|Q96S37-3|SLC22A12	MULTI-MSMS	OvCa9_classI_Rep3	3	499.76806640625	2	499.766906	997.519259	0.041509	2.0745E-05	3.3554	0.0016769	3.3969	0.0016977	499.76830208981505	103.99	1.3013	102.56	102.18	103.49	-1.4347					51	24	3	0	0	0	0.39172	1	7231	7231		69.628	3.8245	1	340580	+		36872	22962	30388	30414	40277	40277					0.020399819208023473
LVSNGLTGHT	10	Unmodified	_LVSNGLTGHT_					0	0	0			REV__nc|ENSG00000197891|Q96S37-3|SLC22A12	REV__nc|ENSG00000197891|Q96S37-3|SLC22A12	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	499.766906	997.519259	-1.208	-0.00060371	4.6093	0.0023036	3.4013	0.0016999	499.7689113094421	103.18	0.93729	102.5	102.18	103.12	-0.68459	-0.038649	0.0004744	NaN	69.628	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	278080	+		36873	22962	30388	30414							0.020399819208023473
LVSNGLTGHT	10	Unmodified	_LVSNGLTGHT_					0	0	0			REV__nc|ENSG00000197891|Q96S37-3|SLC22A12	REV__nc|ENSG00000197891|Q96S37-3|SLC22A12	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	499.766906	997.519259	-0.65935	-0.00032952	4.2671	0.0021326	3.6078	0.0018031	499.76874646722524	104.67	0.92801	102.55	102.22	103.15	-2.1192	0.014209	0.00013238	NaN	69.628	44	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	321940	+		36874	22962	30388	30414							0.020399819208023473
LVSNNEVEPS	10	Unmodified	_LVSNNEVEPS_					0	0	0			REV__ENSG00000173769|ENST00000309765|TOPAZ1	REV__ENSG00000173769|ENST00000309765|TOPAZ1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.8016357421875	2	544.266936	1086.51932	1.6653	0.00090637	3.6705	0.0019977	5.3358	0.0029041	544.2690866074367	116.98	0.41183	116.98	116.86	117.27	0					13	8	2	0	0	0	0.026635	1	13427	13427		47.657	17.154	1	195340	+		36875	21799	30389	30415	40278	40278					-0.020480628698578585
LVSPAYVHL	9	Unmodified	_LVSPAYVHL_					0	0	0			REV__ENST00000415930.7_2_19:34890945-34891167:+|nuORF	REV__ENST00000415930.7_2_19:34890945-34891167:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	499.78515625	2	499.78711	997.559667	-0.41373	-0.00020678	-3.9873	-0.0019928	-4.401	-0.0021996	499.785001315598	118.5	0.54613	117.47	117.19	117.73	-1.0271					28	10	3	0	0	0	0.50066	1	8947	8947		42.474	5.3154	1	170150	+		36876	25540	30390	30416	40279	40279					0.06078948311221666
LVSPIIIVHE	10	Unmodified	_LVSPIIIVHE_					0	0	0		ENSG00000168135|ENST00000303592|KCNJ4	ENSG00000168135|ENST00000303592|KCNJ4	ENSG00000168135|ENST00000303592|KCNJ4	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.339599609375	2	560.342249	1118.66995	-5.405	-0.0030286	1.8017	0.0010096	-3.6033	-0.0020191	560.3432112723539	161.88	2.7705	160.26	159.52	162.29	-1.6239					146	74	5	0	0	0	0.72319	1	15992	15992		27.882	1.1893	1	403070			36877	6875	30391	30417	40280	40280					0.11535748579603933
LVSRLPPEV	9	Unmodified	_LVSRLPPEV_					0	0	0			REV__ENSG00000170606|ENST00000304858|HSPA4	REV__ENSG00000170606|ENST00000304858|HSPA4	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.7445373535156	2	505.305667	1008.59678	-1.0832	-0.00054733	1.0877	0.00054964	0.004575	2.3118E-06	505.30611084021746	69.94	0.53804	69.94	69.672	70.21	0					20	12	2	0	0	0	0.027462	1	6696	6696		21.96	0	1	332210	+		36878	21551	30392	30418	40281	40281					0.09282619856992369
LVSSGTHTVN	10	Unmodified	_LVSSGTHTVN_					0	0	0		nc|ENSG00000082146|Q9C0K7-3|STRADB;nc|ENSG00000082146|Q9C0K7-2|STRADB;ENSG00000082146|ENST00000194530|STRADB	nc|ENSG00000082146|Q9C0K7-3|STRADB	nc|ENSG00000082146|Q9C0K7-3|STRADB	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7615966796875	2	507.764363	1013.51417	-1.0595	-0.00053799	-2.2098	-0.0011221	-3.2693	-0.0016601	507.76307961190355	127.55	2.4705	126.11	125.15	127.62	-1.4357					106	48	4	0	0	0	0.3976	1	12157	12157		68.787	10.976	1	646950			36879	1670	30393	30419	40282	40282					0.007956780581821477
LVSSILGMNIL	11	Oxidation (M)	_LVSSILGM(Oxidation (M))NIL_		LVSSILGM(1)NIL		LVSSILGM(75)NIL	0	0	1			REV__ENST00000600120.5_1_19:53612624-53612735:-|nuORF	REV__ENST00000600120.5_1_19:53612624-53612735:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	588.3446044921875	2	588.338849	1174.66315	1.3223	0.00077794	4.3418	0.0025544	5.664	0.0033324	588.3413084231856	87.79	1.1281	86.359	86.04	87.168	-1.4311					43	22	2	0	0	0	0.23673	1	7681	7681		75.043	13.352	1	513000	+		36880	28028	30394	30420	40283	40283		622			0.08280067636724198
LVSSIMSYV	9	Unmodified	_LVSSIMSYV_					0	0	0			REV__nc|ENSG00000221955|A0AV02-2|SLC12A8	REV__nc|ENSG00000221955|A0AV02-2|SLC12A8	MULTI-MSMS	OvCa9_classI_Rep2	2	499.7648010253906	2	499.764986	997.515419	0.42626	0.00021303	-0.30435	-0.00015211	0.1219	6.0922E-05	499.76512722989173	126.31	4.05	126.07	125.5	129.55	-0.2359					192	81	3	0	0	0	0.27546	1	12357	12357		65.803	2.4969	1	11682000	+		36881	23350	30395	30421	40284	40284					0.016561761027332977
LVSSKVKPKE	10	Unmodified	_LVSSKVKPKE_					0	0	0			REV__tr|A0A553SGE0|A0A553SGE0_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_10665PE=4SV=1	REV__tr|A0A553SGE0|A0A553SGE0_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_10665PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.84326171875	2	557.845156	1113.67576	0.51035	0.0002847	-2.2452	-0.0012525	-1.7349	-0.0009678	557.8434310249822	20.27	0.69334	18.932	18.762	19.456	-1.3386					20	13	3	0	0	0	0.52439	1	36	36		51.193	10.415	1	54721	+		36882	29690	30396	30422	40285	40285					0.12346847091271229
LVSVGYQASK	10	Unmodified	_LVSVGYQASK_					0	0	0		nc|ENSG00000176024|Q6PF04-2|ZNF613;ENSG00000176024|ENST00000293471|ZNF613	nc|ENSG00000176024|Q6PF04-2|ZNF613	nc|ENSG00000176024|Q6PF04-2|ZNF613	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.3092041015625	2	526.292756	1050.57096	0.70075	0.0003688	-0.98091	-0.00051625	-0.28017	-0.00014745	526.2921171980007	131.77	0.74718	131.77	131.48	132.23	0					32	15	3	0	0	0	0.026994	1	15292	15292		25.574	9.5673	1	245620			36883	7577	30397	30423	40286	40286					0.04769725614710296
LVSVPGYL	8	Unmodified	_LVSVPGYL_					0	0	0		ENST00000324787.9_2_7:140710339-140714730:-|nuORF;ENST00000393008.7_1_7:140710339-140714460:-|nuORF	ENST00000324787.9_2_7:140710339-140714730:-|nuORF	ENST00000324787.9_2_7:140710339-140714730:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	424.249755859375	2	424.249829	846.485105	2.0891	0.00088631	0.15877	6.7356E-05	2.2479	0.00095366	424.2498130403272	122.52	0.59268	122.52	122.27	122.86	0					20	12	2	0	0	0	0.57589	1	14108	14108		69.093	11.64	1	175050			36884	10397	30398	30424	40287	40287					0.055721854998637355
LVSVSLRKP	9	Unmodified	_LVSVSLRKP_					0	0	0		ENSG00000158578|ENST00000650242|ALAS2	ENSG00000158578|ENST00000650242|ALAS2	ENSG00000158578|ENST00000650242|ALAS2	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.8322448730469	2	499.821484	997.628415	-0.30909	-0.00015449	-0.24656	-0.00012324	-0.55565	-0.00027773	499.82126366709053	72.882	0.83418	70.482	70.115	70.949	-2.3999					23	15	2	0	0	0	0.027462	1	5884	5884		37.159	0	1	19891			36885	5962	30399	30425	40288	40288					0.1295061261095043
LVSWKPPDG	9	Unmodified	_LVSWKPPDG_					0	0	0		ENSG00000166450|ENST00000389286|PRTG	ENSG00000166450|ENST00000389286|PRTG	ENSG00000166450|ENST00000389286|PRTG	MULTI-MSMS	OvCa9_classI_Rep3	3	499.7677001953125	2	499.768917	997.523281	0.041509	2.0745E-05	-0.66924	-0.00033447	-0.62773	-0.00031372	499.76830208981505	103.99	1.3013	102.56	102.18	103.49	-1.4347					51	24	3	0	0	0	0.24951	1	7225	7225		68.787	2.3575	1	340580			36886	6682	30400	30426	40289	40289					0.024420714145207967
LVSWQKQGR	9	Unmodified	_LVSWQKQGR_					0	0	0		ENST00000548084.1_1_12:57118801-57118918:-|nuORF	ENST00000548084.1_1_12:57118801-57118918:-|nuORF	ENST00000548084.1_1_12:57118801-57118918:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	552.2918701171875	2	551.311815	1100.60908	-0.97769	-0.00053901	-1.1271	-0.00062141	-2.1048	-0.0011604	551.311272541583	94.875	1.151	92.979	92.712	93.863	-1.8956					54	22	4	0	0	0	0.027462	1	6223	6223		45.972	15.655	1	347830			36887	13557	30401	30427	40290	40290					0.06279656320043614
LVSYFIKNNL	10	Unmodified	_LVSYFIKNNL_					0	0	0		tr|A0A553STP0|A0A553STP0_NIACISigma-54-dependentFisfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_05080PE=4SV=1	tr|A0A553STP0|A0A553STP0_NIACISigma-54-dependentFisfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_05080PE=4SV=1	tr|A0A553STP0|A0A553STP0_NIACISigma-54-dependentFisfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_05080PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	403.58709716796875	3	404.23253	1209.67576	-0.08438	-3.4109E-05	-2.6869	-0.0010861	-2.7713	-0.0011202	404.2312323473595	61.972	0.39749	59.212	58.987	59.385	-2.7593					13	7	2	0	0	0	0.026681	1	4626	4626		36.447	7.2972	1	9843.7			36888	34513	30402	30428	40291	40291					0.07930847091279247
LVSYPFDTV	9	Unmodified	_LVSYPFDTV_					0	0	0		ENSG00000151729|ENST00000281456|SLC25A4;ENST00000491736.1_1_4:186066902-186068122:+|nuORF	ENSG00000151729|ENST00000281456|SLC25A4	ENSG00000151729|ENST00000281456|SLC25A4	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.7682495117188	2	520.768583	1039.52261	-0.65675	-0.00034201	-3.8061	-0.0019821	-4.4628	-0.0023241	520.7665431506473	77.263	2.5418	74.447	74.096	76.638	-2.8165					142	52	5	0	0	0	0.44294	1	6225	6225		47.916	1.9434	1	4845700			36889	5579	30403	30429	40292	40292					0.00443231974804803
LVTASINFIML	11	Unmodified	_LVTASINFIML_					0	0	0			REV__DOK4-PLLP|1|fusion	REV__DOK4-PLLP|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3497314453125	2	611.349217	1220.68388	2.8968	0.0017709	0.056018	3.4247E-05	2.9528	0.0018052	611.3491630908582	125.96	1.25	124.91	124.58	125.83	-1.0525					67	23	4	0	0	0	0.68021	1	9840	9840		36.447	0	1	429160	+		36890	16334	30404	30430	40293	40293					0.08236658016380716
LVTASVKKDQ	10	Unmodified	_LVTASVKKDQ_					0	0	0			REV__tr|A0A553SM75|A0A553SM75_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21975PE=4SV=1	REV__tr|A0A553SM75|A0A553SM75_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21975PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	544.8215942382812	2	544.819138	1087.62372	1.6015	0.00087255	4.2541	0.0023177	5.8557	0.0031903	544.8213100294219	116.81	0.86087	116.81	116.51	117.37	0					51	18	4	0	0	0	0.48198	1	13388	13388		56.721	0	1	1698400	+		36891	30302	30405	30431	40294	40294					0.08341683677531364
LVTDGERIL	9	Unmodified	_LVTDGERIL_					0	0	0		ENST00000426028.2_1_9:29825693-29826221:-|nuORF	ENST00000426028.2_1_9:29825693-29826221:-|nuORF	ENST00000426028.2_1_9:29825693-29826221:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	508.28912353515625	2	508.292756	1014.57096	-0.9868	-0.00050158	0.71941	0.00036567	-0.26739	-0.00013591	508.29294653313184	116.44	1.3851	115.39	115.05	116.43	-1.0414					64	27	4	0	0	0	0.21395	1	8683	8683		73.975	5.49	1	264190			36892	11730	30406	30432	40295	40295					0.06425725614712974
LVTFGVVGLLV	11	Unmodified	_LVTFGVVGLLV_					0	0	0			REV__ENSG00000172457|ENST00000641668|OR9G4	REV__ENSG00000172457|ENST00000641668|OR9G4	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.327392578125	2	558.854993	1115.69543	-0.57342	-0.00032046	-0.023654	-1.3219E-05	-0.59707	-0.00033368	558.8550867131637	27.766	0.5007	27.766	27.44	27.941	0					14	9	2	0	0	0	0.025959	1	827	827		23.042	9.5884	1	57467	+		36893	21699	30407	30433	40296	40296					0.14221223102049407
LVTFLFGSD	9	Unmodified	_LVTFLFGSD_					0	0	0			REV__tr|A0A7D6VSN9|A0A7D6VSN9_9CLOTTransportpermeaseproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07640PE=3SV=1	REV__tr|A0A7D6VSN9|A0A7D6VSN9_9CLOTTransportpermeaseproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07640PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.7651062011719	2	499.7633	997.512048	-1.053	-0.00052626	4.0977	0.0020479	3.0447	0.0015216	499.76572667649543	127.6	4.5409	126.16	125.39	129.93	-1.4357					197	90	5	0	0	0	0.19716	1	12274	12274		76.847	19.035	1	12586000	+		36894	31526	30408	30434	40297	40297					0.013192493203860067
LVTGQMEI	8	Unmodified	_LVTGQMEI_					0	0	0			REV__tr|A0A7D6VP10|A0A7D6VP10_9CLOTTranslationinitiationfactorIF-1OS=ClostridiumintestinaleOX=36845GN=infAPE=3SV=1	REV__tr|A0A7D6VP10|A0A7D6VP10_9CLOTTranslationinitiationfactorIF-1OS=ClostridiumintestinaleOX=36845GN=infAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	445.75885009765625	2	445.736228	889.457904	-0.7545	-0.00033631	-0.15009	-6.69E-05	-0.90459	-0.00040321	445.7354394531071	83.121	0.4514	80.825	80.629	81.081	-2.2963					11	8	2	0	0	0	0.028476	1	4743	4743		37.159	8.0096	1	12596	+		36895	31221	30409	30435	40298	40298					0.008753338971700941
LVTHWVII	8	Unmodified	_LVTHWVII_					0	0	0			REV__ENSG00000172901|ENST00000357872|LVRN	REV__ENSG00000172901|ENST00000357872|LVRN	MULTI-SECPEP	OvCa9_classI_Rep3	3	490.77484130859375	2	490.80002	979.585488	-0.92777	-0.00045535	1.0923	0.00053612	0.16457	8.077E-05	490.8004110746453	90.178	1.5275	88.097	87.798	89.326	-2.0805					44	29	3	0	0	0	0.028476	1	5708	5708		57.453	7.4281	1	78983	+		36896	21735	30410	30436	40299	40299					0.09487842553505743
LVTHWVII	8	Unmodified	_LVTHWVII_					0	0	0			REV__ENSG00000172901|ENST00000357872|LVRN	REV__ENSG00000172901|ENST00000357872|LVRN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	490.80002	979.585488	2.2652	0.0011118	-2.5067	-0.0012303	-0.24146	-0.00011851	490.7987482205446	89.166	0.93964	87.799	87.576	88.516	-1.3676	-0.2039	-0.0017191	NaN	57.453	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63831	+		36897	21735	30410	30436							0.09487842553505743
LVTHWVII	8	Unmodified	_LVTHWVII_					0	0	0			REV__ENSG00000172901|ENST00000357872|LVRN	REV__ENSG00000172901|ENST00000357872|LVRN	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	490.80002	979.585488	0.17727	8.7002E-05	-0.2844	-0.00013958	-0.10714	-5.2583E-05	490.7997304170548	90.687	1.0267	88.112	87.853	88.879	-2.575	0.10932	0.00046222	NaN	57.453	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69933	+		36898	21735	30410	30436							0.09487842553505743
LVTKDIEVKD	10	Unmodified	_LVTKDIEVKD_					0	0	0			REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-MSMS	OvCa99_classI_Rep5	1	580.336181640625	2	580.332079	1158.6496	-1.2607	-0.00073163	4.2187	0.0024483	2.958	0.0017166	580.3344939595904	104.52	2.9963	104.52	103.89	106.89	0					197	68	6	0	0	0	0.49558	1	11722	11722		54.776	0	1	65637000	+		36899	19851	30411	30437	40300	40300					0.07662533129132498
LVTKKTTKA	9	Unmodified	_LVTKKTTKA_					0	0	0			REV__ENST00000437414.1_1_17:58804528-58804777:-|nuORF	REV__ENST00000437414.1_1_17:58804528-58804777:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	495.3257751464844	2	495.321317	988.628081	-2.6448	-0.00131	4.4032	0.002181	1.7583	0.00087093	495.32343607693826	103.94	1.7588	103.94	103.64	105.4	0					107	40	4	0	0	0	0.27001	1	11678	11678		66.429	0.6261	1	11551000	+		36900	25794	30412	30438	40301	40301					0.13331192891075716
LVTLIPRVL	9	Unmodified	_LVTLIPRVL_					0	0	0		tr|A0A553SGI1|A0A553SGI1_NIACIAzlDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10900PE=4SV=1	tr|A0A553SGI1|A0A553SGI1_NIACIAzlDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10900PE=4SV=1	tr|A0A553SGI1|A0A553SGI1_NIACIAzlDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10900PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	512.3483276367188	2	512.349877	1022.6852	0.50505	0.00025876	-4.3698	-0.0022389	-3.8648	-0.0019801	512.3475445625393	161.11	0.40283	161.11	160.91	161.31	0					14	7	3	0	0	0	0.48324	1	18890	18890		44.117	0	1	45515			36901	33159	30413	30439	40302	40302					0.17476660167460523
LVTLKKSLL	9	Unmodified	_LVTLKKSLL_					0	0	0		ENST00000254624.9_3_8:133008724-133014042:+|nuORF	ENST00000254624.9_3_8:133008724-133014042:+|nuORF	ENST00000254624.9_3_8:133008724-133014042:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	507.850830078125	2	507.84971	1013.68487	2.7547	0.001399	-0.80115	-0.00040687	1.9536	0.00099211	507.84920820002236	90.245	1.0042	90.245	89.933	90.938	0					63	24	4	0	0	0	0.19758	1	9690	9690		76.774	10.345	1	7768300			36902	9812	30414	30440	40303	40303					0.17857240447608547
LVTNKFEM	8	Unmodified	_LVTNKFEM_					0	0	0		tr|A0A553SR88|A0A553SR88_NIACIROKfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00435PE=3SV=1	tr|A0A553SR88|A0A553SR88_NIACIROKfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00435PE=3SV=1	tr|A0A553SR88|A0A553SR88_NIACIROKfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00435PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	491.2547302246094	2	491.257328	980.500103	-1.4164	-0.00069584	1.227	0.00060278	-0.18943	-9.3058E-05	491.2578621280451	88.612	0.94868	86.009	85.679	86.628	-2.6027					35	18	3	0	0	0	0.61436	1	7582	7582		60.972	0	1	468800			36903	34235	30415	30441	40304	40304					0.009073093055462778
LVTPRILKA	9	Unmodified	_LVTPRILKA_					0	0	0		nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2;nc|ENSG00000078269|O15056-3|SYNJ2	nc|ENSG00000078269|O15056-2|SYNJ2	nc|ENSG00000078269|O15056-2|SYNJ2	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.3250732421875	2	505.839677	1009.6648	-1.0489	-0.00053057	1.258	0.00063634	0.2091	0.00010577	505.84017965729066	75.216	1.3915	72.805	72.29	73.682	-2.4106					49	27	3	0	0	0	0.027447	1	3859	3859		56.721	10.749	1	41064			36904	1591	30416	30442	40305	40305					0.16035489507646616
LVTPRILKA	9	Unmodified	_LVTPRILKA_					0	0	0		nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2;nc|ENSG00000078269|O15056-3|SYNJ2	nc|ENSG00000078269|O15056-2|SYNJ2	nc|ENSG00000078269|O15056-2|SYNJ2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	505.839677	1009.6648	-0.9042	-0.00045738	1.1794	0.00059659	0.27521	0.00013921	505.8401549349485	74.703	0.93549	72.732	72.481	73.417	-1.9711	-0.12223	0.00019124	NaN	56.721	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47591			36905	1591	30416	30442							0.16035489507646616
LVTPRILKA	9	Unmodified	_LVTPRILKA_					0	0	0		nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2;nc|ENSG00000078269|O15056-3|SYNJ2	nc|ENSG00000078269|O15056-2|SYNJ2	nc|ENSG00000078269|O15056-2|SYNJ2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	505.839677	1009.6648	-0.34619	-0.00017512	-0.31823	-0.00016097	-0.66442	-0.00033609	505.8393876954602	75.964	0.71461	73.025	72.79	73.504	-2.9389	0.17119	-0.0013239	NaN	56.721	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52918			36906	1591	30416	30442							0.16035489507646616
LVTPRMAEV	9	Unmodified	_LVTPRMAEV_					0	0	0		ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.30279541015625	2	508.283877	1014.5532	-1.1212	-0.00056991	-3.3475	-0.0017015	-4.4688	-0.0022714	508.2827001899165	91.117	0.45222	89.093	88.879	89.332	-2.0241					11	8	2	0	0	0	0.027072	1	5702	5702		90.37	16.395	1	20707			36907	2506	30417	30443	40306	40306					0.04650687088212635
LVTRTPPFP	9	Unmodified	_LVTRTPPFP_					0	0	0			REV__ENST00000313946.12_1_4:3949295-3954866:-|nuORF	REV__ENST00000313946.12_1_4:3949295-3954866:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.298828125	2	514.300384	1026.58622	-3.8779	-0.0019944	0.076213	3.9196E-05	-3.8017	-0.0019552	514.3003106263079	152.84	0.8661	151.4	151.16	152.03	-1.4351					38	19	3	0	0	0	0.64339	1	15140	15140		26.796	0	1	59473	+		36908	24375	30418	30444	40307	40307					0.07398637202550162
LVTRTPPFP	9	Unmodified	_LVTRTPPFP_					0	0	0			REV__ENST00000313946.12_1_4:3949295-3954866:-|nuORF	REV__ENST00000313946.12_1_4:3949295-3954866:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	514.300384	1026.58622	-3.8779	-0.0019944	0.076213	3.9196E-05	-3.8017	-0.0019552	514.3003106263079	152.84	0.8661	151.4	151.16	152.03	-1.4351	-0.0070357	-0.00039	NaN	26.796	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59473	+		36909	24375	30418	30444							0.07398637202550162
LVTSILHGL	9	Unmodified	_LVTSILHGL_					0	0	0			REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|266|1|anti-sense	REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|266|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	476.2276306152344	2	476.794935	951.575317	1.6839	0.00080286	0.15474	7.378E-05	1.8386	0.00087664	476.79487047273665	110	0.62864	110	109.73	110.35	0					22	13	3	0	0	0	0.027456	1	12481	12481		38.806	0	1	214060	+		36910	28206	30419	30445	40308	40308					0.09759234828288754
LVTTARLQP	9	Unmodified	_LVTTARLQP_					0	0	0		ENST00000585361.5_1_17:42148606-42152071:+|nuORF	ENST00000585361.5_1_17:42148606-42152071:+|nuORF	ENST00000585361.5_1_17:42148606-42152071:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	499.8037109375	2	499.803291	997.59203	2.9668	0.0014828	-3.4995	-0.0017491	-0.53271	-0.00026625	499.80144783197306	25.905	0.3849	23.195	23.033	23.418	-2.7097					15	9	2	0	0	0	0.56889	1	303	303		35.618	1.4457	1	25775			36911	14028	30420	30446	40309	40309					0.09313735714226823
LVTTETPLGNQ	11	Unmodified	_LVTTETPLGNQ_					0	0	0			REV__ENST00000528808.1_1_11:60150614-60157189:+|nuORF	REV__ENST00000528808.1_1_11:60150614-60157189:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	586.8101196289062	2	586.81151	1171.60847	1.1527	0.0006764	-4.1924	-0.0024602	-3.0398	-0.0017838	586.8089620538643	111.49	1.632	111.49	111.07	112.7	0					84	35	3	0	0	0	0.58572	1	12721	12721		45.972	0.020292	1	3926300	+		36912	27177	30421	30447	40310	40310					0.029527720896794563
LVTVIILIL	9	Unmodified	_LVTVIILIL_					0	0	0		tr|A0A553SR26|A0A553SR26_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_00150PE=3SV=1	tr|A0A553SR26|A0A553SR26_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_00150PE=3SV=1	tr|A0A553SR26|A0A553SR26_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_00150PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.832275390625	2	498.857004	995.699455	-0.18603	-9.2804E-05	4.0005	0.0019957	3.8145	0.0019029	498.86108175095154	72.794	0.29886	70.307	70.183	70.482	-2.4873					7	5	2	0	0	0	0.027462	1	3492	3492		25.45	0	1	7551.7			36913	34223	30422	30448	40311	40311					0.20143312595769203
LVTVLCKNT	9	Unmodified	_LVTVLCKNT_					0	0	0		ENST00000531894.5_1_16:70011782-70023933:-|nuORF	ENST00000531894.5_1_16:70011782-70023933:-|nuORF	ENST00000531894.5_1_16:70011782-70023933:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.3257751464844	2	495.786253	989.557952	-1.9976	-0.00099037	-2.8075	-0.0013919	-4.8051	-0.0023823	495.78475110519753	104.36	0.51479	104.36	104.02	104.54	0					22	11	3	0	0	0	0.027462	1	11678	11678		56.721	12.604	1	302750			36914	13316	30423	30449	40312	40312					0.0627557123096949
LVTVLFLVPLL	11	Unmodified	_LVTVLFLVPLL_					0	0	0			REV__ENSG00000124490|ENST00000339139|CRISP2	REV__ENSG00000124490|ENST00000339139|CRISP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	409.6083068847656	3	409.608937	1225.80498	0.55096	0.00022568	-3.0159	-0.0012353	-2.4649	-0.0010097	409.60762934156605	108.64	8.1164	106.92	106.42	114.53	-1.7256					461	158	5	0	0	0	0.66495	1	9912	9912		38.754	1.2454	1	863570	+		36915	18689	30424	30450	40313	40313					0.2011122872136184
LVTVVWFYLK	10	Unmodified	_LVTVVWFYLK_					0	0	0		ENST00000398117.1_1_18:60794336-60794393:-|nuORF	ENST00000398117.1_1_18:60794336-60794393:-|nuORF	ENST00000398117.1_1_18:60794336-60794393:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	634.378173828125	2	634.376092	1266.73763	0.70959	0.00045014	1.7008	0.001079	2.4104	0.0015291	634.3769097150116	164.24	2.8363	164.24	163	165.84	0					295	106	3	0	0	0	0.76627	1	19176	19176		23.042	1.0826	1	532610			36916	11366	30425	30451	40314	40314					0.1149319851040218
LVTWINPL	8	Unmodified	_LVTWINPL_					0	0	0			REV__nc|ENSG00000146453|Q8NA58|PNLDC1	REV__nc|ENSG00000146453|Q8NA58|PNLDC1	MULTI-MSMS	OvCa99_classI_Rep5	1	478.2843017578125	2	478.284203	954.553853	2.5866	0.0012372	-4.1918	-0.0020049	-1.6052	-0.00076774	478.28210355661963	75.946	0.68222	75.946	75.723	76.405	0					32	16	3	0	0	0	0.30448	1	7591	7591		106.42	1.6687	1	1235000	+		36917	20018	30426	30452	40315	40315					0.07475849799561729
LVVALTVPPL	10	Unmodified	_LVVALTVPPL_					0	0	0			REV__ENST00000219313.8_1_16:74339753-74339849:+|nuORF	REV__ENST00000219313.8_1_16:74339753-74339849:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	511.3357238769531	2	511.336436	1020.65832	0.67261	0.00034393	-0.86721	-0.00044344	-0.19461	-9.9509E-05	511.33582601620805	126.08	1.3814	125.85	125.5	126.89	-0.23589					66	27	4	0	0	0	0.64063	1	12293	12293		37.159	0	1	172330	+		36918	23733	30427	30453	40316	40316					0.14881551556254635
LVVALTVPPL	10	Unmodified	_LVVALTVPPL_					0	0	0			REV__ENST00000219313.8_1_16:74339753-74339849:+|nuORF	REV__ENST00000219313.8_1_16:74339753-74339849:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	511.3356018066406	2	511.336436	1020.65832	1.2132	0.00062035	-1.4172	-0.00072469	-0.20405	-0.00010434	511.33557175390297	127.02	1.4474	125.94	125.6	127.05	-1.0715					62	27	4	0	0	0	0.50656	1	9956	9956		53.351	2.016	1	200840	+		36919	23733	30427	30453	40317	40317					0.14881551556254635
LVVALYHVF	9	Unmodified	_LVVALYHVF_					0	0	0			REV__ENSG00000162738|ENST00000368061|VANGL2	REV__ENSG00000162738|ENST00000368061|VANGL2	MULTI-MSMS	OvCa9_classI_Rep2	2	530.808837890625	2	530.813128	1059.6117	0.34487	0.00018306	-0.42158	-0.00022378	-0.076712	-4.072E-05	530.8127589207236	128.23	1.7294	128.01	127.69	129.42	-0.22696					65	34	3	0	0	0	0.53728	1	12576	12576		39.021	1.21	1	105520	+		36920	20774	30428	30454	40318	40318					0.08428111724970222
LVVDYRFS	8	Unmodified	_LVVDYRFS_					0	0	0			REV__ENSG00000130349|ENST00000311381|MTRES1	REV__ENSG00000130349|ENST00000311381|MTRES1	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.76727294921875	2	499.768917	997.523281	-0.65935	-0.00032952	0.24252	0.0001212	-0.41684	-0.00020832	499.76874646722524	104.67	0.92801	102.55	102.22	103.15	-2.1192					44	17	3	0	0	0	0.62934	1	9502	9502		57.811	4.4598	1	321940	+		36921	18943	30429	30455	40319	40319					0.024420714145207967
LVVEMNRQP	9	Unmodified	_LVVEMNRQP_					0	0	0			REV__IFT172|p.R1483Sfs*10|1|0.16|ENSG00000138002|chr2:27447902-27447903|-/ACTGCAAGCTCCGCTTCCCGGGTTCA|frameshift_variant	REV__IFT172|p.R1483Sfs*10|1|0.16|ENSG00000138002|chr2:27447902-27447903|-/ACTGCAAGCTCCGCTTCCCGGGTTCA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.3268432617188	2	543.292233	1084.56991	2.7059	0.0014701	4.0599	0.0022057	6.7658	0.0036758	543.2944056447458	115.84	1.014	115.84	115.54	116.55	0					43	21	3	0	0	0	0.027462	1	13204	13204		25.45	0	1	387960	+		36922	19500	30430	30456	40320	40320					0.031011879741527082
LVVERPSFP	9	Unmodified	_LVVERPSFP_					0	0	0			REV__tr|A0A553SL31|A0A553SL31_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_19870PE=4SV=1	REV__tr|A0A553SL31|A0A553SL31_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_19870PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	522.3004150390625	2	522.297842	1042.58113	1.5083	0.0007878	3.8846	0.0020289	5.3929	0.0028167	522.2997389978688	112.74	1.0604	112.74	112.39	113.45	0					60	23	4	0	0	0	0.18193	1	12851	12851		79.451	5.4763	1	2286200	+		36923	30178	30431	30457	40321	40321					0.06154333339964069
LVVFASKKLR	10	Unmodified	_LVVFASKKLR_					0	0	0			REV__ENSG00000163328|ENST00000392552|GPR155	REV__ENSG00000163328|ENST00000392552|GPR155	MULTI-SECPEP	OvCa9_classI_Rep3	3	580.8303833007812	2	580.879333	1159.74411	-1.721	-0.00099967	-3.013	-0.0017502	-4.734	-0.0027499	580.8772750148491	76.062	0.25472	73.69	73.518	73.773	-2.3715					7	4	2	0	0	0	0.027021	1	3888	3888		29.15	0	1	12645	+		36924	20827	30432	30458	40322	40322					0.17063136461797512
LVVFPFNEP	9	Unmodified	_LVVFPFNEP_					0	0	0			REV__ENSG00000075785|ENST00000265062|RAB7A	REV__ENSG00000075785|ENST00000265062|RAB7A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.305419921875	2	531.286943	1060.55933	-1.7006	-0.00090352	0.70145	0.00037267	-0.99917	-0.00053085	531.2869658924199	95.797	1.3631	93.372	93.105	94.468	-2.4256					48	26	3	0	0	0	0.027462	1	8489	8489		37.159	0	1	92753	+		36925	16978	30433	30459	40323	40323					0.031475285913757034
LVVFPFNEP	9	Unmodified	_LVVFPFNEP_					0	0	0			REV__ENSG00000075785|ENST00000265062|RAB7A	REV__ENSG00000075785|ENST00000265062|RAB7A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	531.286943	1060.55933	-1.2685	-0.00067396	-0.49152	-0.00026114	-1.7601	-0.0009351	531.2864781406889	94.371	1.2857	93.271	93.01	94.296	-1.0995	-0.021821	-0.00057712	NaN	42.396	39	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82765	+		36926	16978	30433	30459							0.031475285913757034
LVVFPFNEP	9	Unmodified	_LVVFPFNEP_					0	0	0			REV__ENSG00000075785|ENST00000265062|RAB7A	REV__ENSG00000075785|ENST00000265062|RAB7A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	531.286943	1060.55933	-0.41207	-0.00021893	-1.7315	-0.0009199	-2.1435	-0.0011388	531.2864236462086	95.131	1.7525	93.236	92.255	94.008	-1.8956	-0.057247	-0.0018946	NaN	42.396	51	34	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116740	+		36927	16978	30433	30459							0.031475285913757034
LVVFSLLRMM	10	Unmodified	_LVVFSLLRMM_					0	0	0			REV__chr1:156020167-156020337|155|13.06|0.31|5.39|-|0|SSR2,None|1	REV__chr1:156020167-156020337|155|13.06|0.31|5.39|-|0|SSR2,None|1	MSMS	OvCa9_classI_Rep4_	4	604.8472290039062	2	604.84833	1207.68211	NaN	NaN	NaN	NaN	NaN	NaN	NaN	151.48	1	150.05	149.55	150.55	-1.4344								0	0	0	0.14572	1	14973	14973		3.1592	0	1		+		36928	15805	30434	30460	40324	40324					0.08657325726790077
LVVFVFLFLW	10	Unmodified	_LVVFVFLFLW_					0	0	0		ENSG00000205882|ENST00000382205|DEFB134	ENSG00000205882|ENST00000382205|DEFB134	ENSG00000205882|ENST00000382205|DEFB134	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8829956054688	2	641.883553	1281.75255	-4.6434	-0.0029805	3.1356	0.0020127	-1.5078	-0.00096781	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.73286	1	15421	15421		26.796	11.931	1	543390			36929	9089	30435	30461	40325	40325					0.1229469037839408
LVVFVLALV	9	Unmodified	_LVVFVLALV_					0	0	0		ENST00000425141.5_1_2:220498093-220506447:+|nuORF;nc|ENSG00000114923|P48751-2|SLC4A3;ENSG00000114923|ENST00000358055|SLC4A3;nc|ENSG00000114923|P48751-3|SLC4A3	ENST00000425141.5_1_2:220498093-220506447:+|nuORF	ENST00000425141.5_1_2:220498093-220506447:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	487.28253173828125	2	486.828246	971.64194	-1.463	-0.00071224	2.9213	0.0014222	1.4583	0.00070995	486.8278271648553	83.02	0.2527	80.723	80.629	80.882	-2.2963					5	4	2	0	0	0	0.027462	1	4710	4710		29.842	8.1392	1	7180.5			36930	3049	30436	30462	40326	40326					0.15498470390173225
LVVGGIQMVL	10	Unmodified	_LVVGGIQMVL_					0	0	0		ENSG00000169903|ENST00000305354|TM4SF4	ENSG00000169903|ENST00000305354|TM4SF4	ENSG00000169903|ENST00000305354|TM4SF4	MULTI-MSMS	OvCa99_classI_Rep5	1	514.8151245117188	2	514.81227	1027.60999	-0.46883	-0.00024136	4.4363	0.0022839	3.9675	0.0020425	514.814476393954	69.498	1.1012	69.498	69.184	70.286	0					52	26	3	0	0	0	0.41846	1	6598	6598		65.803	2.4969	1	8640100			36931	7051	30437	30463	40327	40327					0.0972873464472741
LVVGRLIT	8	Unmodified	_LVVGRLIT_					0	0	0			REV__nc|ENSG00000114859|P51788-4|CLCN2;REV__ENSG00000188037|ENST00000343257|CLCN1	REV__ENSG00000188037|ENST00000343257|CLCN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	435.76092529296875	2	435.792195	869.569838	1.2589	0.00054864	-1.6119	-0.00070246	-0.35297	-0.00015382	435.79149419516403	45.601	0.47611	45.601	45.413	45.89	0					16	10	2	0	0	0	0.028476	1	3162	3162		40.573	0	1	138230	+		36932	16147;22685	30438	30464	40328	40328					0.12983556036454047
LVVHEIHN	8	Unmodified	_LVVHEIHN_					0	0	0			REV__ENST00000582655.5_1_17:27237828-27251299:-|nuORF	REV__ENST00000582655.5_1_17:27237828-27251299:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.7682800292969	2	480.766709	959.518865	0.11463	5.511E-05	-0.42615	-0.00020488	-0.31152	-0.00014977	480.76637305248687	56.948	2.4306	53.603	52.668	55.098	-3.3449					134	47	4	0	0	0	0.71369	1	3640	3640		40.573	0	1	828540	+		36933	17919	30439	30465	40329	40329					0.037486069915985354
LVVHFGTL	8	Unmodified	_LVVHFGTL_					0	0	0			REV__ENSG00000156599|ENST00000287169|ZDHHC5;REV__ENST00000529480.1_1_11:57457792-57467500:+|nuORF;REV__nc|ENSG00000099904|Q9ULC8-3|ZDHHC8	REV__ENST00000529480.1_1_11:57457792-57467500:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	443.27508544921875	2	443.263271	884.511988	-0.84534	-0.00037471	-3.7901	-0.00168	-4.6355	-0.0020547	443.2614450002528	69.898	0.97475	66.417	66.057	67.032	-3.4812					29	19	2	0	0	0	0.028476	1	5219	5219		100.27	50.831	1	53779	+		36934	20488;27192;17340	30440	30466	40330	40330					0.06511294111044208
LVVHFGTL	8	Unmodified	_LVVHFGTL_					0	0	0			REV__ENSG00000156599|ENST00000287169|ZDHHC5;REV__ENST00000529480.1_1_11:57457792-57467500:+|nuORF;REV__nc|ENSG00000099904|Q9ULC8-3|ZDHHC8	REV__ENST00000529480.1_1_11:57457792-57467500:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	443.263271	884.511988	0.9155	0.00040581	-6.1374	-0.0027205	-5.2219	-0.0023147	443.2604569814953	69.16	0.79736	66.54	66.068	66.865	-2.6203	0.061439	-0.0011407	NaN	100.27	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18223	+		36935	20488;27192;17340	30440	30466							0.06511294111044208
LVVHGGILR	9	Unmodified	_LVVHGGILR_					0	0	0		tr|A0A7D6W1P6|A0A7D6W1P6_9CLOTHistidinephosphatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03505PE=4SV=1	tr|A0A7D6W1P6|A0A7D6W1P6_9CLOTHistidinephosphatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03505PE=4SV=1	tr|A0A7D6W1P6|A0A7D6W1P6_9CLOTHistidinephosphatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03505PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.7697448730469	2	482.308544	962.602535	0.049876	2.4056E-05	-0.37241	-0.00017961	-0.32253	-0.00015556	482.30815275942484	96.33	0.71278	93.904	93.609	94.322	-2.4256					23	13	2	0	0	0	0.027462	1	8543	8543		19.36	0	1	16529			36936	35413	30441	30467	40331	40331					0.11973763159335249
LVVIAGYLCL	10	Unmodified	_LVVIAGYLCL_					0	0	0		ENSG00000180432|ENST00000316161|CYP8B1	ENSG00000180432|ENST00000316161|CYP8B1	ENSG00000180432|ENST00000316161|CYP8B1	MULTI-MSMS	OvCa99_classI_Rep5	1	532.3128662109375	2	532.314646	1062.61474	1.9949	0.0010619	-3.0172	-0.0016061	-1.0224	-0.00054422	532.3128512073132	133.82	0.85121	133.82	133.49	134.34	0					48	17	4	0	0	0	0.49566	1	15555	15555		54.765	1.4132	1	700110			36937	7872	30442	30468	40332	40332					0.08593618787472224
LVVKRAETE	9	Unmodified	_LVVKRAETE_					0	0	0			REV__nc|ENSG00000146842|Q96SK2-2|TMEM209	REV__nc|ENSG00000146842|Q96SK2-2|TMEM209	MULTI-MSMS	OvCa99_classI_Rep5	1	522.8070068359375	2	522.806031	1043.59751	-0.85326	-0.00044609	0.17208	8.9963E-05	-0.68118	-0.00035613	522.8060517130161	55.662	0.98156	55.662	55.358	56.34	0					77	23	5	0	0	0	0.33652	1	4553	4553		58.782	0.97068	1	27365000	+		36938	20031	30443	30469	40333	40333					0.07745414506030102
LVVLLILWFGI	11	Unmodified	_LVVLLILWFGI_					0	0	0			REV__nc|ENSG00000004939|P02730-2|SLC4A1	REV__nc|ENSG00000004939|P02730-2|SLC4A1	MULTI-SECPEP	OvCa9_classI_Rep2	2	429.24993896484375	3	429.280932	1284.82097	1.0686	0.00045873	-2.029	-0.000871	-0.96038	-0.00041227	429.2808910137355	90.975	0.30653	89.739	89.488	89.795	-1.2355					8	5	2	0	0	0	0.025814	1	8033	8033		27.047	3.6694	1	7239.1	+		36939	16386	30444	30470	40334	40334					0.18994934958254817
LVVLLRTKK	9	Unmodified	_LVVLLRTKK_					0	0	0			REV__ENSG00000088854|ENST00000252032|DNAAF9	REV__ENSG00000088854|ENST00000252032|DNAAF9	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.294189453125	2	535.376426	1068.7383	0.16904	9.0502E-05	2.4881	0.0013321	2.6571	0.0014226	535.3784938630179	62.613	0.20073	62.613	62.541	62.741	0					6	4	2	0	0	0	0.027462	1	5602	5602		47.916	1.9636	1	144290	+		36940	17184	30445	30471	40335	40335					0.20668037950122198
LVVLPGVPQ	9	Unmodified	_LVVLPGVPQ_					0	0	0			REV__ENSG00000169174|ENST00000302118|PCSK9	REV__ENSG00000169174|ENST00000302118|PCSK9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	460.2931213378906	2	461.292028	920.569503	1.4497	0.00066874	-1.4747	-0.00068029	-0.025041	-1.1551E-05	461.2911123998204	137.74	0.58313	136.21	135.98	136.56	-1.5284					26	12	3	0	0	0	0.027462	1	13368	13368		18.324	0	1	17711	+		36941	21437	30446	30472	40336	40336					0.10604136316624135
LVVNCGPTL	9	Unmodified	_LVVNCGPTL_					0	0	0		ENST00000539253.5_1_1:205305896-205306043:-|nuORF	ENST00000539253.5_1_1:205305896-205306043:-|nuORF	ENST00000539253.5_1_1:205305896-205306043:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	457.776611328125	2	458.252046	914.489538	-0.28237	-0.0001294	-3.7807	-0.0017325	-4.0631	-0.0018619	458.2491484218874	102.84	0.29571	102.16	102.03	102.33	-0.68459					7	5	2	0	0	0	0.027462	1	9462	9462		15.642	0	1	4286.7			36942	13433	30447	30473	40337	40337					0.028873266511141082
LVVNESFKI	9	Unmodified	_LVVNESFKI_					0	0	0			REV__tr|A0A7D6VNZ9|A0A7D6VNZ9_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20455PE=4SV=1	REV__tr|A0A7D6VNZ9|A0A7D6VNZ9_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20455PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	524.8070068359375	2	524.8055	1047.59645	-0.80273	-0.00042128	-1.7483	-0.0009175	-2.551	-0.0013388	524.8041196356187	117.99	1.0403	116.96	116.79	117.83	-1.0324					61	20	4	0	0	0	0.37135	1	8903	8903		54.776	5.3348	1	347220	+		36943	31218	30448	30474	40338	40338					0.07455200137133033
LVVNNSDFR	9	Unmodified	_LVVNNSDFR_					0	0	0			REV__ENSG00000180992|ENST00000372014|MRPL14	REV__ENSG00000180992|ENST00000372014|MRPL14	MULTI-MSMS	OvCa99_classI_Rep5	1	532.281494140625	2	532.28018	1062.54581	1.7557	0.00093453	-0.22343	-0.00011893	1.5323	0.0008156	532.2798876059638	133.37	1.4446	133.37	132.89	134.34	0					64	30	3	0	0	0	0.31747	1	15533	15533		60.972	0.67798	1	395970	+		36944	22210	30449	30475	40339	40339					0.01703670812139535
LVVPAWRKR	9	Unmodified	_LVVPAWRKR_					0	0	0			REV__ZNF20-DAND5|1|fusion	REV__ZNF20-DAND5|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.8163452148438	2	562.856193	1123.69783	1.007	0.00056678	-3.1961	-0.001799	-2.1892	-0.0012322	562.8550326974905	72.313	0.20147	72.313	72.249	72.45	0					6	4	2	0	0	0	0.027456	1	7027	7027		47.916	0	1	106750	+		36945	22115	30450	30476	40340	40340					0.14093116350363744
LVVRCPSP	8	Unmodified	_LVVRCPSP_					0	0	0			REV__ENST00000467237.5_1_7:150773814-150774197:-|nuORF	REV__ENST00000467237.5_1_7:150773814-150774197:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	435.263916015625	2	435.746931	869.479308	0.72147	0.00031438	2.6736	0.001165	3.3951	0.0014794	435.7488565247614	72.103	0.26234	69.596	69.485	69.747	-2.5072					5	4	2	0	0	0	0.028476	1	5825	5825		35.201	8.4046	1	4835.1	+		36946	26202	30451	30477	40341	40341					0.039347637165292326
LVVRHQLLKT	10	Unmodified	_LVVRHQLLKT_					0	0	0		ENSG00000127184|ENST00000247655|COX7C;ENST00000511472.5_1_5:85913768-85915283:+|nuORF	ENSG00000127184|ENST00000247655|COX7C	ENSG00000127184|ENST00000247655|COX7C	MULTI-MSMS	OvCa99_classI_Rep5	1	402.9290466308594	3	402.927552	1205.76083	0.86126	0.00034703	-0.7641	-0.00030788	0.097161	3.9149E-05	402.92724785129496	51.726	2.1023	51.726	51.461	53.564	0					126	48	5	0	0	0	0.39172	2	3995	3995;4024		123.21	73.742	1	20393000			36947	3821	30452	30478	40342;40343	40342					0.1661763734773558
LVVRHQLLKT	10	Unmodified	_LVVRHQLLKT_					0	0	0		ENSG00000127184|ENST00000247655|COX7C;ENST00000511472.5_1_5:85913768-85915283:+|nuORF	ENSG00000127184|ENST00000247655|COX7C	ENSG00000127184|ENST00000247655|COX7C	MULTI-MSMS	OvCa99_classI_Rep5	1	603.890380859375	2	603.88769	1205.76083	-0.29412	-0.00017761	0.23938	0.00014456	-0.054733	-3.3052E-05	603.8877587409523	51.727	0.97409	51.727	51.504	52.478	0					63	22	4	0	0	0	0.39172	1	4002	4002		69.628	23.655	1	6630100			36948	3821	30452	30478	40344	40344					0.1661763734773558
LVVRHQLLKT	10	Unmodified	_LVVRHQLLKT_					0	0	0		ENSG00000127184|ENST00000247655|COX7C;ENST00000511472.5_1_5:85913768-85915283:+|nuORF	ENSG00000127184|ENST00000247655|COX7C	ENSG00000127184|ENST00000247655|COX7C	MULTI-MSMS	OvCa99_classI_Rep5	1	603.8892211914062	2	603.88769	1205.76083	1.9231	0.0011613	0.17287	0.0001044	2.096	0.0012657	603.8876378357046	125.37	0.83086	125.37	125.07	125.9	0					51	20	3	0	0	0	0.5675	1	14476	14476		45.972	3.108	1	410480			36949	3821	30452	30478	40345	40345					0.1661763734773558
LVVRHRLTSN	10	Unmodified	_LVVRHRLTSN_					0	0	0			REV__nc|ENSG00000116183|Q9BXP8-2|PAPPA2	REV__nc|ENSG00000116183|Q9BXP8-2|PAPPA2	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8560791015625	2	597.856921	1193.69929	-1.9041	-0.0011384	0.86104	0.00051478	-1.0431	-0.00062361	597.8573316932594	144.83	3.9651	143.86	141.71	145.68	-0.97301					192	79	4	0	0	0	0.79213	1	12159	12159		19.997	4.355	1	187110	+		36950	18289	30453	30479	40346	40346					0.11018705648461946
LVVRYIDLT	9	Unmodified	_LVVRYIDLT_					0	0	0		tr|A0A553SND7|A0A553SND7_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_24200PE=3SV=1	tr|A0A553SND7|A0A553SND7_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_24200PE=3SV=1	tr|A0A553SND7|A0A553SND7_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_24200PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.328125	2	546.326599	1090.63865	-0.86646	-0.00047337	0.28307	0.00015465	-0.58339	-0.00031872	546.3266961035738	105.99	2.0074	103.98	103.55	105.55	-2.0161					87	38	4	0	0	0	0.16524	1	9651	9651		82.305	0.064519	1	594290			36951	33916	30454	30480	40347	40347					0.09695175545516577
LVVSFPILLM	10	Unmodified	_LVVSFPILLM_					0	0	0			REV__ENSG00000175143|ENST00000642005|OR2T1	REV__ENSG00000175143|ENST00000642005|OR2T1	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.3141479492188	2	566.345946	1130.67734	-0.42041	-0.0002381	2.2645	0.0012825	1.8441	0.0010444	566.3469117987776	65.466	0.31602	65.466	65.309	65.625	0					13	7	2	0	0	0	0.026612	1	5990	5990		45.952	5.3793	1	244550	+		36952	21873	30455	30481	40348	40348					0.1172276485567636
LVVSVAIII	9	Unmodified	_LVVSVAIII_					0	0	0			REV__ENSG00000111450|ENST00000392373|STX2	REV__ENSG00000111450|ENST00000392373|STX2	MULTI-MSMS	OvCa99_classI_Rep5	1	463.8186950683594	2	463.817879	925.621205	1.1332	0.00052558	0.89992	0.0004174	2.0331	0.00094298	463.8181384508825	155.12	2.5278	155.12	154.47	157	0					119	49	3	0	0	0	0.049137	1	18202	18202		119.22	0	1	188430	+		36953	18034	30456	30482	40349	40349					0.15541880010528075
LVVTHGSF	8	Unmodified	_LVVTHGSF_					0	0	0			REV__nc|ENSG00000156671|Q96LT4-2|SAMD8	REV__nc|ENSG00000156671|Q96LT4-2|SAMD8	MULTI-MSMS	OvCa99_classI_Rep5	1	430.23834228515625	2	430.237253	858.459953	2.3996	0.0010324	-0.25269	-0.00010872	2.1469	0.00092369	430.23705290137895	121.86	0.69574	121.86	121.66	122.36	0					22	14	2	0	0	0	0.59103	1	14039	14039		65.897	5.6035	1	148290	+		36954	20490	30457	30483	40350	40350					0.025061306972816055
LVVTVRTLSL	10	Unmodified	_LVVTVRTLSL_					0	0	0			REV__ENSG00000131899|ENST00000316843|LLGL1	REV__ENSG00000131899|ENST00000316843|LLGL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.2669677734375	2	550.855524	1099.69649	0.016346	9.0041E-06	-1.0619	-0.00058495	-1.0455	-0.00057595	550.8546175569727	57.203	0.35636	53.858	53.679	54.035	-3.3449					8	6	2	0	0	0	0.027118	1	3719	3719		25.574	2.0514	1	8966.8	+		36955	19041	30458	30484	40351	40351					0.1506343747093979
LVVTYAFF	8	Unmodified	_LVVTYAFF_					0	0	0			REV__tr|A0A553SGP8|A0A553SGP8_NIACINCS2familypermeaseOS=NialliacirculansOX=1397GN=CEQ21_11280PE=3SV=1	REV__tr|A0A553SGP8|A0A553SGP8_NIACINCS2familypermeaseOS=NialliacirculansOX=1397GN=CEQ21_11280PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.2508239746094	2	480.265479	958.516405	-0.3299	-0.00015844	3.6175	0.0017374	3.2876	0.0015789	480.2669602551192	48.447	0.82259	48.447	48.073	48.895	0					26	18	2	0	0	0	0.028476	1	3518	3518		46.766	2.6496	1	526310	+		36956	29727	30459	30485	40352	40352					0.03548758533941054
LVVVLFNL	8	Unmodified	_LVVVLFNL_					0	0	0			REV__ENSG00000127995|ENST00000297273|CASD1	REV__ENSG00000127995|ENST00000297273|CASD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.2373962402344	2	458.796946	915.57934	-0.2441	-0.00011199	-2.5242	-0.0011581	-2.7683	-0.0012701	458.7955276885803	41.217	0.4058	41.217	41.014	41.42	0					18	8	3	0	0	0	0.028476	1	2555	2555		52.299	17.098	1	212570	+		36957	18836	30460	30486	40353	40353					0.11817324321987144
LVVVNSLSICL	11	Unmodified	_LVVVNSLSICL_					0	0	0		L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|413|3|anti-sense	L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|413|3|anti-sense	L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|413|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	580.3046264648438	2	580.341392	1158.66823	-0.49248	-0.0002858	-4.2864	-0.0024876	-4.7788	-0.0027734	580.3388460358982	64.329	0.68272	60.854	60.539	61.222	-3.475					29	13	3	0	0	0	0.025638	1	4591	4591		30.318	7.7381	1	52584			36958	14697	30461	30487	40354	40354					0.09524371499378503
LVVYARLKL	9	Unmodified	_LVVYARLKL_					0	0	0			REV__ENST00000524628.1_1_11:65770029-65771240:+|nuORF	REV__ENST00000524628.1_1_11:65770029-65771240:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	537.807373046875	2	537.855327	1073.6961	0.76619	0.0004121	-1.191	-0.00064059	-0.42481	-0.00022849	537.854555649943	98.352	1.2386	96.593	96.211	97.45	-1.7595					45	23	3	0	0	0	0.027456	1	6547	6547		47.916	10.756	1	86649	+		36959	27103	30462	30488	40355	40355					0.16220062541719926
LVVYPAAGLI	10	Unmodified	_LVVYPAAGLI_					0	0	0		tr|A0A7D6VUI3|A0A7D6VUI3_9CLOTNAD-dependentproteindeacetylaseOS=ClostridiumintestinaleOX=36845GN=cobBPE=3SV=1	tr|A0A7D6VUI3|A0A7D6VUI3_9CLOTNAD-dependentproteindeacetylaseOS=ClostridiumintestinaleOX=36845GN=cobBPE=3SV=1	tr|A0A7D6VUI3|A0A7D6VUI3_9CLOTNAD-dependentproteindeacetylaseOS=ClostridiumintestinaleOX=36845GN=cobBPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.3189392089844	2	508.312961	1014.61137	2.2271	0.0011321	2.5211	0.0012815	4.7482	0.0024136	508.31412048437	137.37	0.62814	137.37	137.06	137.69	0					20	12	2	0	0	0	0.5794	1	16041	16041		44.531	2.0566	1	110350			36960	35187	30463	30489	40356	40356					0.10464692005132292
LVVYPWTQR	9	Unmodified	_LVVYPWTQR_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__P02070;ENSG00000223609|ENST00000650601|HBD;CON__Q3SX09;ENSG00000213934|ENST00000330597|HBG1;ENSG00000213931|ENST00000396895|HBE1;ENSG00000196565|ENST00000336906|HBG2	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	OvCa99_classI_Rep5	1	581.326171875	2	581.324391	1160.63423	2.4763	0.0014395	-0.65631	-0.00038153	1.82	0.001058	581.324247738894	99.135	0.72786	99.135	98.801	99.529	0					47	17	4	0	0	0	0.34132	1	10957	10957		58.23	12.258	1	5697600		+	36961	9402	30464	30490	40357	40357					0.06033711122586283
LVVYPWTQR	9	Unmodified	_LVVYPWTQR_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__P02070;ENSG00000223609|ENST00000650601|HBD;CON__Q3SX09;ENSG00000213934|ENST00000330597|HBG1;ENSG00000213931|ENST00000396895|HBE1;ENSG00000196565|ENST00000336906|HBG2	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	OvCa9_classI_Rep4_	4	581.3245849609375	2	581.324391	1160.63423	-1.145	-0.00066559	0.20834	0.00012111	-0.93662	-0.00054448	581.3243833721342	101.53	1.4228	99.263	98.974	100.4	-2.2665					81	27	4	0	0	0	0.33652	1	9112	9112		58.782	9.2459	1	357890		+	36962	9402	30464	30490	40358	40358					0.06033711122586283
LVVYQTEF	8	Unmodified	_LVVYQTEF_					0	0	0			REV__ENST00000518968.1_1_8:50652851-50653445:-|nuORF	REV__ENST00000518968.1_1_8:50652851-50653445:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	499.76513671875	2	499.7633	997.512048	0.8461	0.00042285	2.5175	0.0012581	3.3636	0.001681	499.7649286167221	127.27	5.5139	126.2	124.35	129.86	-1.0715					229	108	5	0	0	0	0.61758	1	10042	10042		60.294	2.4827	1	11725000	+		36963	27037	30465	30491	40359	40359					0.013192493203860067
LVWGKQICD	9	Unmodified	_LVWGKQICD_					0	0	0			REV__nc|ENSG00000165695|Q96MA6-2|AK8	REV__nc|ENSG00000165695|Q96MA6-2|AK8	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.8131103515625	2	531.276052	1060.53755	2.5179	0.0013377	-2.1852	-0.001161	0.33266	0.00017673	531.2753366865767	99.509	0.25258	99.509	99.318	99.57	0					8	5	2	0	0	0	0.027462	1	10981	10981		29.15	0	1	321410	+		36964	21109	30466	30492	40360	40360					0.00970400571168284
LVWGNYDT	8	Unmodified	_LVWGNYDT_					0	0	0			REV__SVEP1|p.S2985Tfs*35|1|0.18|ENSG00000165124|chr9:110406648-110406649|-/GAGAACCACAAGAAGTGTG|frameshift_variant	REV__SVEP1|p.S2985Tfs*35|1|0.18|ENSG00000165124|chr9:110406648-110406649|-/GAGAACCACAAGAAGTGTG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.7678527832031	2	484.229625	966.444697	0.90565	0.00043854	1.8209	0.00088174	2.7266	0.0013203	484.23042326263834	81.485	0.48756	81.485	81.206	81.694	0					19	11	2	0	0	0	0.028476	1	8376	8376		19.36	0	1	341970	+		36965	29480	30467	30493	40361	40361					-0.03986780890591035
LVWKVSVP	8	Unmodified	_LVWKVSVP_					0	0	0		tr|A0A7D7ACH0|A0A7D7ACH0_9CLOTL-lactatepermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19095PE=3SV=1	tr|A0A7D7ACH0|A0A7D7ACH0_9CLOTL-lactatepermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19095PE=3SV=1	tr|A0A7D7ACH0|A0A7D7ACH0_9CLOTL-lactatepermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19095PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	464.28436279296875	2	464.286746	926.558939	-0.47757	-0.00022173	-4.3764	-0.0020319	-4.854	-0.0022537	464.2847749072464	94.677	2.282	93.578	92.958	95.24	-1.0995					133	45	5	0	0	0	0.59148	1	8551	8551		65.803	5.6849	1	4671500			36966	36229	30468	30494	40362	40362					0.09272153662175242
LVWLLLSL	8	Unmodified	_LVWLLLSL_					0	0	0			REV__CDH12|p.V63Cfs*43|1|0.27|ENSG00000154162|chr5:22078490-22078491|-/A|frameshift_variant	REV__CDH12|p.V63Cfs*43|1|0.27|ENSG00000154162|chr5:22078490-22078491|-/A|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.24188232421875	2	478.812596	955.61064	-0.33405	-0.00015995	-4.2018	-0.0020119	-4.5359	-0.0021718	478.81038220195035	54.478	0.54734	54.478	54.214	54.761	0					28	12	3	0	0	0	0.028476	1	4411	4411		14.664	0	1	599400	+		36967	15766	30469	30495	40363	40363					0.13105897356092555
LVWLSAAMGF	10	Unmodified	_LVWLSAAMGF_					0	0	0		nc|ENSG00000140839|Q6UXF7|CLEC18B	nc|ENSG00000140839|Q6UXF7|CLEC18B	nc|ENSG00000140839|Q6UXF7|CLEC18B	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.3331298828125	2	547.788795	1093.56304	1.6364	0.00089639	0.39736	0.00021767	2.0337	0.0011141	547.7892841560532	127.8	1.2077	127.8	127.49	128.7	0					38	25	2	0	0	0	0.026822	1	14770	14770		38.806	1.647	1	138440			36968	15057	30470	30496	40364	40364					0.019998750935883436
LVWPIVQV	8	Unmodified	_LVWPIVQV_					0	0	0			REV__nc|ENSG00000214575|Q9BZB8-4|CPEB1	REV__nc|ENSG00000214575|Q9BZB8-4|CPEB1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.2745361328125	2	477.294571	952.574589	-0.56961	-0.00027187	-3.9665	-0.0018932	-4.5361	-0.0021651	477.2924743720294	95.101	1.8163	92.633	92.31	94.127	-2.4685					80	35	4	0	0	0	0.028476	1	8349	8349		15.636	0.97212	1	386600	+		36969	23292	30471	30497	40365	40365					0.09640440179236975
LVWQKSVHKL	10	Unmodified	_LVWQKSVHKL_					0	0	0		nc|ENSG00000175170|Q5T319-2|FAM182B;ENST00000376398.6_1_20:26054468-26063613:+|nuORF;nc|ENSG00000175170|Q5T319|FAM182B;nc|ENSG00000125804|Q5T1J6|FAM182A	nc|ENSG00000175170|Q5T319-2|FAM182B	nc|ENSG00000175170|Q5T319-2|FAM182B	MULTI-MSMS	OvCa9_classI_Rep3	3	619.3720092773438	2	619.374415	1236.73428	-5.649	-0.0034989	1.4512	0.00089884	-4.1978	-0.0026	619.3752552398936	159.28	1.2139	158.02	157.66	158.88	-1.267					65	23	4	0	0	0	0.82648	1	13797	13797		15.642	2.1878	1	112740			36970	11069	30472	30498	40366	40366					0.1253794845642915
LVWSFSLG	8	Unmodified	_LVWSFSLG_					0	0	0			REV__ENSG00000117868|ENST00000275418|ESYT2	REV__ENSG00000117868|ENST00000275418|ESYT2	MULTI-SECPEP	OvCa99_classI_Rep5	1	454.76446533203125	2	454.747453	907.480354	2.1405	0.00097339	1.0751	0.00048889	3.2156	0.0014623	454.7478094384696	79.545	0.6749	79.545	79.436	80.111	0					25	16	2	0	0	0	0.028476	1	8164	8164		74.517	29.986	1	429140	+		36971	18372	30473	30499	40367	40367					0.02291301357104203
LVWVALKV	8	Unmodified	_LVWVALKV_					0	0	0			REV__ENST00000361577.7_2_14:45465099-45468670:+|nuORF	REV__ENST00000361577.7_2_14:45465099-45468670:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.2841796875	2	464.304939	926.595324	-0.48593	-0.00022562	3.5069	0.0016283	3.021	0.0014026	464.3066704177612	94.73	0.24388	93.631	93.558	93.802	-1.0995					9	4	3	0	0	0	0.028476	1	8493	8493		35.201	14.719	1	25943	+		36972	24857	30474	30500	40368	40368					0.1290903055887611
LVWVLAPI	8	Unmodified	_LVWVLAPI_					0	0	0		ENST00000291294.6_1_19:47123946-47124471:-|nuORF	ENST00000291294.6_1_19:47123946-47124471:-|nuORF	ENST00000291294.6_1_19:47123946-47124471:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	455.79052734375	2	455.791664	909.568775	-1.8664	-0.00085071	-3.1096	-0.0014173	-4.976	-0.002268	455.79018128378505	107.87	1.3328	106	105.69	107.02	-1.8785					43	26	2	0	0	0	0.46547	1	9881	9881		80.997	4.2229	1	218710			36973	10095	30475	30501	40369	40369					0.11037341667554301
LVWVPLSLL	9	Unmodified	_LVWVPLSLL_					0	0	0			REV__ENSG00000100365|ENST00000248899|NCF4	REV__ENSG00000100365|ENST00000248899|NCF4	MULTI-MSMS	OvCa9_classI_Rep3	3	520.328125	2	520.331153	1038.64775	-0.29574	-0.00015388	-4.1421	-0.0021553	-4.4379	-0.0023092	520.3288824399598	115.77	1.6292	114.72	114.06	115.69	-1.0414					54	32	2	0	0	0	0.22913	1	8633	8633		71.378	2.8932	1	448460	+		36974	17407	30476	30502	40370	40370					0.12997568901846535
LVWVSLFAL	9	Unmodified	_LVWVSLFAL_					0	0	0		ENST00000424435.1_1_1:154375977-154376226:-|nuORF	ENST00000424435.1_1_1:154375977-154376226:-|nuORF	ENST00000424435.1_1_1:154375977-154376226:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7958984375	2	524.315503	1046.61645	2.1448	0.0011245	-2.5854	-0.0013556	-0.44063	-0.00023103	524.3140079560609	121.25	0.8857	121.25	121.06	121.94	0					33	19	2	0	0	0	0.027462	1	13946	13946		42.474	0	1	152350			36975	11712	30477	30503	40371	40371					0.09500995867756501
LVWWVLLA	8	Unmodified	_LVWWVLLA_					0	0	0			REV__nc|ENSG00000096264|O95944-3|NCR2	REV__nc|ENSG00000096264|O95944-3|NCR2	MULTI-MSMS	OvCa9_classI_Rep3	3	500.30474853515625	2	500.304939	998.595324	-0.90168	-0.00045111	-0.11106	-5.5562E-05	-1.0127	-0.00050667	500.3048332508997	94.515	2.0099	92.62	91.95	93.96	-1.8956					112	39	4	0	0	0	0.35898	1	6127	6127		96.041	19.267	1	1694700	+		36976	28764	30478	30504	40372	40372					0.09597030558893493
LVWYPTVLLT	10	Unmodified	_LVWYPTVLLT_					0	0	0		L1MEg_dup1746|chr2:99099337-99100538:+|1.3153921071676258|0.3908750287807103|1.75|429.0|86|3|anti-sense	L1MEg_dup1746|chr2:99099337-99100538:+|1.3153921071676258|0.3908750287807103|1.75|429.0|86|3|anti-sense	L1MEg_dup1746|chr2:99099337-99100538:+|1.3153921071676258|0.3908750287807103|1.75|429.0|86|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	602.8563232421875	2	602.85245	1203.69035	2.2611	0.0013631	3.6502	0.0022005	5.9113	0.0035636	602.8544543064842	71.261	1.6459	68.658	68.074	69.72	-2.6023					101	32	5	0	0	0	0.22395	2	3313	3313;3339		90.777	16.802	1	817540			36977	14633	30479	30505	40373;40374	40373					0.09664919239412484
LVWYPTVLLT	10	Unmodified	_LVWYPTVLLT_					0	0	0		L1MEg_dup1746|chr2:99099337-99100538:+|1.3153921071676258|0.3908750287807103|1.75|429.0|86|3|anti-sense	L1MEg_dup1746|chr2:99099337-99100538:+|1.3153921071676258|0.3908750287807103|1.75|429.0|86|3|anti-sense	L1MEg_dup1746|chr2:99099337-99100538:+|1.3153921071676258|0.3908750287807103|1.75|429.0|86|3|anti-sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	602.85245	1203.69035	0.048356	2.9152E-05	5.923	0.0035707	5.9713	0.0035998	602.8558003140444	71.075	1.5582	68.568	67.979	69.537	-2.5071	-0.11475	0.00094587	NaN	90.777	86	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	461530			36978	14633	30479	30505							0.09664919239412484
LVWYPTVLLT	10	Unmodified	_LVWYPTVLLT_					0	0	0		L1MEg_dup1746|chr2:99099337-99100538:+|1.3153921071676258|0.3908750287807103|1.75|429.0|86|3|anti-sense	L1MEg_dup1746|chr2:99099337-99100538:+|1.3153921071676258|0.3908750287807103|1.75|429.0|86|3|anti-sense	L1MEg_dup1746|chr2:99099337-99100538:+|1.3153921071676258|0.3908750287807103|1.75|429.0|86|3|anti-sense	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	602.85245	1203.69035	-0.57925	-0.0003492	5.8895	0.0035505	5.3103	0.0032013	602.855813201385	72.277	1.5531	68.821	68.317	69.87	-3.4563	0.13862	0.00090554	NaN	90.777	91	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	651720			36979	14633	30479	30505							0.09664919239412484
LVYARGLLK	9	Unmodified	_LVYARGLLK_					0	0	0			REV__tr|A0A553SGD0|A0A553SGD0_NIACIWingedhelix-turn-helixtranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_10640PE=4SV=1	REV__tr|A0A553SGD0|A0A553SGD0_NIACIWingedhelix-turn-helixtranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_10640PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.8350219726562	2	516.831852	1031.64915	1.3295	0.00068715	0.28738	0.00014853	1.6169	0.00083568	516.8317566969331	102.78	2.7493	102.78	102.08	104.83	0					121	64	3	0	0	0	0.21395	1	11474	11474		73.975	1.3548	1	1300500	+		36980	29687	30480	30506	40375	40375					0.1345920299061163
LVYFVSVILA	10	Unmodified	_LVYFVSVILA_					0	0	0		ENST00000294740.3_1_1:200375972-200376104:-|nuORF	ENST00000294740.3_1_1:200375972-200376104:-|nuORF	ENST00000294740.3_1_1:200375972-200376104:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3436279296875	2	562.341718	1122.66888	1.2434	0.00069921	1.8105	0.0010181	3.0539	0.0017173	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.80532	1	13949	13949		18.324	0	1	683710			36981	10118	30481	30507	40376	40376					0.11245534210729602
LVYGLGPINN	10	Unmodified	_LVYGLGPINN_					0	0	0			REV__nc|ENSG00000134249|Q9UKF2-2|ADAM30	REV__nc|ENSG00000134249|Q9UKF2-2|ADAM30	MSMS	OvCa99_classI_Rep5	1	530.2976684570312	2	530.295299	1058.57605	NaN	NaN	NaN	NaN	NaN	NaN	NaN	161.08	1	161.08	160.58	161.58	0								0	0	0	0.13545	1	18886	18886		29.15	2.3535	1		+		36982	19187	30482	30508	40377	40377					0.049100294773325004
LVYLCIAFK	9	Unmodified	_LVYLCIAFK_					0	0	0			REV__tr|A0A553SPS4|A0A553SPS4_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_26920PE=3SV=1	REV__tr|A0A553SPS4|A0A553SPS4_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_26920PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.294189453125	2	535.309364	1068.60417	0.10318	5.5235E-05	2.3476	0.0012567	2.4508	0.0013119	535.3105392659987	63.504	1.4299	63.504	62.661	64.091	0					50	35	2	0	0	0	0.027433	1	5602	5602		68.485	26.089	1	563000	+		36983	30562	30483	30509	40378	40378					0.07261636133057436
LVYLFSVTISA	11	Unmodified	_LVYLFSVTISA_					0	0	0			REV__tr|A0A7D6ZYA2|A0A7D6ZYA2_9CLOTDUF2975domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01375PE=4SV=1	REV__tr|A0A7D6ZYA2|A0A7D6ZYA2_9CLOTDUF2975domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01375PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	404.8994140625	3	404.900668	1211.68018	0.98968	0.00040072	-3.3721	-0.0013654	-2.3824	-0.00096465	404.8992858109358	40.733	0.98371	40.733	40.479	41.462	0					65	21	5	0	0	0	0.62561	1	2512	2512		42.338	7.1599	1	4359300	+		36984	32363	30484	30510	40379	40379					0.08280311514204186
LVYLLLLLP	9	Unmodified	_LVYLLLLLP_					0	0	0		ENST00000602966.1_1_1:160970859-160990872:-|nuORF	ENST00000602966.1_1_1:160970859-160990872:-|nuORF	ENST00000602966.1_1_1:160970859-160990872:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.7975463867188	2	528.857004	1055.69945	-0.46145	-0.00024404	-3.3252	-0.0017586	-3.7866	-0.0020026	528.8550794636764	99.061	1.2889	97.376	97.009	98.297	-1.685					54	24	3	0	0	0	0.027462	1	6613	6613		14.664	3.7985	1	97435			36985	14253	30485	30511	40380	40380					0.1738331259575716
LVYPEELKP	9	Unmodified	_LVYPEELKP_					0	0	0		RIF1|p.L2186Qfs*51|1|0.07|ENSG00000080345|chr2:151466077-151466077|T/-|frameshift_variant;nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	RIF1|p.L2186Qfs*51|1|0.07|ENSG00000080345|chr2:151466077-151466077|T/-|frameshift_variant	RIF1|p.L2186Qfs*51|1|0.07|ENSG00000080345|chr2:151466077-151466077|T/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2936401367188	2	544.305332	1086.59611	0.84507	0.00045998	1.1866	0.0006459	2.0317	0.0011059	544.3057016072438	81.072	0.71864	81.072	80.529	81.248	0					32	16	3	0	0	0	0.027462	1	8320	8320		25.45	0	1	1216200			36986	1634	30486	30512	40381	40381					0.05627780417262329
LVYSSQRER	9	Unmodified	_LVYSSQRER_					0	0	0		ENST00000435560.1_1_3:178819298-178865723:-|nuORF	ENST00000435560.1_1_3:178819298-178865723:-|nuORF	ENST00000435560.1_1_3:178819298-178865723:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2776489257812	2	569.304187	1136.59382	0.090013	5.1245E-05	-0.43933	-0.00025011	-0.34932	-0.00019887	569.303949996615	57.071	0.52058	57.071	56.833	57.353	0					21	11	2	0	0	0	0.027438	1	4764	4764		47.96	3.8427	1	841950			36987	11862	30487	30513	40382	40382					0.03098744732187697
LVYTIFAMAP	10	Unmodified	_LVYTIFAMAP_					0	0	0			REV__ENST00000586319.5_1_19:38798235-38799736:-|nuORF	REV__ENST00000586319.5_1_19:38798235-38799736:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	562.3440551757812	2	563.304278	1124.594	0.76564	0.00043129	4.0659	0.0022904	4.8316	0.0027216	563.3063451019148	144.42	1.8808	142.99	142.27	144.15	-1.4357					61	35	2	0	0	0	0.026871	1	14080	14080		37.159	3.6435	1	26181	+		36988	21293	30488	30514	40383	40383					0.0366902840783041
LWAFFKKKKS	10	Unmodified	_LWAFFKKKKS_					0	0	0		ENST00000354725.7_1_7:127732221-127732428:+|nuORF	ENST00000354725.7_1_7:127732221-127732428:+|nuORF	ENST00000354725.7_1_7:127732221-127732428:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	641.88232421875	2	641.887158	1281.75976	-4.6434	-0.0029805	-2.4811	-0.0015926	-7.1245	-0.0045731	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.74374	2	15596	15435;15596		25.574	4.6271	1	543390			36989	10666	30489	30515	40384;40385	40385					0.13015422978833158
LWAIHAKRVT	10	Unmodified	_LWAIHAKRVT_					0	0	0		ENST00000404612.1_1_6:26322106-26322214:-|nuORF	ENST00000404612.1_1_6:26322106-26322214:-|nuORF	ENST00000404612.1_1_6:26322106-26322214:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	597.85546875	2	597.858932	1193.70331	-2.7036	-0.0016164	-1.6559	-0.00099001	-4.3595	-0.0026064	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.67931	1	12623	12623		32.812	2.4947	1	591030			36990	11453	30490	30516	40386	40386					0.11420795142180395
LWALGSVGLGG	11	Unmodified	_LWALGSVGLGG_					0	0	0		ENST00000370220.1_1_10:102759899-102760451:+|nuORF	ENST00000370220.1_1_10:102759899-102760451:+|nuORF	ENST00000370220.1_1_10:102759899-102760451:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	515.293212890625	2	515.290017	1028.56548	0.87046	0.00044854	-0.18612	-9.5904E-05	0.68435	0.00035264	515.2904011447545	115.04	0.79457	115.04	114.74	115.54	0					49	16	4	0	0	0	0.64273	1	13158	13158		40.778	1.7567	1	548050			36991	10922	30491	30517	40387	40387					0.05234046822920391
LWASFPPAELL	11	Unmodified	_LWASFPPAELL_					0	0	0			REV__ENST00000301765.9_1_11:60899050-60899611:-|nuORF	REV__ENST00000301765.9_1_11:60899050-60899611:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	622.3357543945312	2	622.339707	1242.66486	-4.541	-0.002826	-0.52977	-0.00032969	-5.0707	-0.0031557	622.3392173202388	154.08	1.2081	153.07	152.74	153.95	-1.0076					67	24	4	0	0	0	0.72466	1	13254	13254		19.997	1.7347	1	199770	+		36992	24252	30492	30518	40388	40388					0.05323444716987069
LWAVKRKAVQG	11	Unmodified	_LWAVKRKAVQG_					0	0	0			REV__nc|ENSG00000133731|P29218-3|IMPA1	REV__nc|ENSG00000133731|P29218-3|IMPA1	MULTI-MSMS	OvCa9_classI_Rep3	3	628.3829956054688	2	628.385314	1254.75608	-4.0512	-0.0025457	-0.39444	-0.00024786	-4.4456	-0.0027935	628.3849132400738	150.53	4.7174	149.58	148	152.71	-0.95647					178	94	2	0	0	0	0.70865	1	12757	12757		26.693	4.733	1	419100	+		36993	28859	30493	30519	40389	40389					0.13888753204969362
LWCGVPLPV	9	Unmodified	_LWCGVPLPV_					0	0	0			REV__ENST00000367975.6_1_1:161332604-161332781:+|nuORF	REV__ENST00000367975.6_1_1:161332604-161332781:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.2720642089844	2	492.272781	982.531009	0.60486	0.00029776	-1.6468	-0.00081065	-1.0419	-0.00051289	492.2720128221692	38.355	2.6605	35.428	35.156	37.817	-2.9264					142	52	5	0	0	0	0.53728	1	1580	1580		39.021	1.993	1	4917900	+		36994	24910	30494	30520	40390	40390					0.0390450741042514
LWCLLGAHRE	10	Unmodified	_LWCLLGAHRE_					0	0	0			REV__ENST00000486482.1_1_19:10222066-10222294:+|nuORF	REV__ENST00000486482.1_1_19:10222066-10222294:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	599.3137817382812	2	599.3135	1196.61245	0.05165	3.0954E-05	1.4646	0.00087774	1.5162	0.0009087	599.3143767573164	22.568	0.31934	22.568	22.381	22.7	0					10	6	2	0	0	0	0.7759	1	231	231		21.96	1.013	1	27765	+		36995	26585	30495	30521	40391	40391					0.022005831023761857
LWDHGALANRH	11	Unmodified	_LWDHGALANRH_					0	0	0		SYTL1|p.Q506H|1|0.44|ENSG00000142765|chr1:27353457-27353457|G/C|missense_variant	SYTL1|p.Q506H|1|0.44|ENSG00000142765|chr1:27353457-27353457|G/C|missense_variant	SYTL1|p.Q506H|1|0.44|ENSG00000142765|chr1:27353457-27353457|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	645.326416015625	2	645.328528	1288.6425	-0.50398	-0.00032523	-2.7628	-0.0017829	-3.2667	-0.0021081	645.3266872760835	99.389	1.4299	97.704	97.009	98.438	-1.685					95	27	5	0	0	0	0.68021	1	6720	6720		36.447	4.9169	1	2398300			36996	32939	30496	30522	40392	40392					0.009726580919277694
LWDITFRF	8	Unmodified	_LWDITFRF_					0	0	0		ENSG00000180914|ENST00000316793|OXTR	ENSG00000180914|ENST00000316793|OXTR	ENSG00000180914|ENST00000316793|OXTR	MULTI-MSMS	OvCa9_classI_Rep2	2	549.2915649414062	2	549.292559	1096.57057	-0.44719	-0.00024564	-3.5118	-0.001929	-3.959	-0.0021746	549.2905935733277	68.893	1.9973	66.272	65.869	67.866	-2.6203					69	39	2	0	0	0	0.66704	1	5443	5443		50.025	0.48849	1	809470			36997	7898	30497	30523	40393	40393					0.026143506854850784
LWDSGLLRSGL	11	Unmodified	_LWDSGLLRSGL_					0	0	0		ENST00000559514.5_1_14:102810637-102814838:-|nuORF	ENST00000559514.5_1_14:102810637-102814838:-|nuORF	ENST00000559514.5_1_14:102810637-102814838:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	608.8359985351562	2	608.837862	1215.66117	-3.9036	-0.0023766	2.3802	0.0014491	-1.5234	-0.0009275	608.8391511731406	151.54	1.2369	151.31	150.94	152.18	-0.22697					74	24	4	0	0	0	0.68757	1	15383	15383		33.922	9.4024	1	158260			36998	13719	30498	30524	40394	40394					0.061967749431460106
LWEWRDEWKDI	11	Unmodified	_LWEWRDEWKDI_					0	0	0			REV__nc|ENSG00000115306|Q01082-3|SPTBN1	REV__nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.3008422851562	3	525.924536	1574.75178	0.96644	0.00050827	1.9044	0.0010016	2.8709	0.0015099	526.2597307816686	144.69	0.38612	144.69	144.5	144.89	0					12	7	2	0	0	0	0.026401	1	16937	16937		17.167	7.9549	1	55159	+		36999	18234	30499	30525	40395	40395					-0.012608007992639614
LWFYLLLL	8	Unmodified	_LWFYLLLL_					0	0	0		chr15:53523322-53540662|224|18.24|0.17|6.76|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|99	chr15:53523322-53540662|224|18.24|0.17|6.76|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|99	chr15:53523322-53540662|224|18.24|0.17|6.76|-|1|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|99	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.8203125	2	540.828246	1079.64194	-5.7107	-0.0030885	-1.7253	-0.00093308	-7.436	-0.0040216	540.8271077239168	156.5	0.55302	154.96	154.7	155.26	-1.545					30	17	2	0	0	0	0.7543	1	15471	15471		24.504	3.5571	1	26492			37000	358	30500	30526	40396	40396					0.1053047039017656
LWGMPETTQPD	11	Unmodified	_LWGMPETTQPD_					0	0	0		BAG3|p.R139W|1|0.42|ENSG00000151929|chr10:119670085-119670085|C/T|missense_variant	BAG3|p.R139W|1|0.42|ENSG00000151929|chr10:119670085-119670085|C/T|missense_variant	BAG3|p.R139W|1|0.42|ENSG00000151929|chr10:119670085-119670085|C/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	637.7919311523438	2	637.789721	1273.56489	1.3923	0.00088797	2.319	0.0014791	3.7113	0.002367	637.7911249558546	142.92	0.53166	142.92	142.69	143.22	0					25	10	3	0	0	0	0.52474	1	16696	16696		51.528	11.47	1	166110			37001	142	30501	30527	40397	40397					-0.06095160679114997
LWGSGLGLSV	10	Unmodified	_LWGSGLGLSV_					0	0	0			REV__ENST00000470140.5_1_10:103343389-103345908:-|nuORF	REV__ENST00000470140.5_1_10:103343389-103345908:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	494.7757873535156	2	494.776742	987.538931	1.6697	0.00082614	-4.1919	-0.0020741	-2.5222	-0.0012479	494.77462039441735	77.779	0.71138	77.779	77.422	78.134	0					33	16	3	0	0	0	0.3976	1	7842	7842		68.787	14.011	1	4209000	+		37002	26255	30502	30528	40398	40398					0.04466357931573839
LWILAAVAVYF	11	Unmodified	_LWILAAVAVYF_					0	0	0		ENSG00000206579|ENST00000327381|XKR4	ENSG00000206579|ENST00000327381|XKR4	ENSG00000206579|ENST00000327381|XKR4	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.3667602539062	2	633.368267	1264.72198	-2.6571	-0.001683	4.0269	0.0025505	1.3698	0.00086757	633.3706685096566	150.42	2.9234	148.98	147.78	150.7	-1.4344					195	63	4	0	0	0	0.72486	1	14983	14983		17.365	1.7232	1	147740			37003	9103	30503	30529	40399	40399					0.10020911993342452
LWIPLLKMH	9	Unmodified	_LWIPLLKMH_					0	0	0		L1M2_dup9102|chr21:15781465-15783675:+|1.9878716944661228|0.1805436335784144|3.46|428.0|76|1|anti-sense	L1M2_dup9102|chr21:15781465-15783675:+|1.9878716944661228|0.1805436335784144|3.46|428.0|76|1|anti-sense	L1M2_dup9102|chr21:15781465-15783675:+|1.9878716944661228|0.1805436335784144|3.46|428.0|76|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8426513671875	2	575.843905	1149.67326	-2.1491	-0.0012375	0.71091	0.00040937	-1.4382	-0.00082817	575.8441928035448	141.47	4.0925	141.24	139.21	143.3	-0.22696					166	82	3	0	0	0	0.59983	1	14188	14188		31.955	4.9075	1	100260			37004	14551	30504	30530	40400	40400					0.10440720152632821
LWIPLLKMH	9	Unmodified	_LWIPLLKMH_					0	0	0		L1M2_dup9102|chr21:15781465-15783675:+|1.9878716944661228|0.1805436335784144|3.46|428.0|76|1|anti-sense	L1M2_dup9102|chr21:15781465-15783675:+|1.9878716944661228|0.1805436335784144|3.46|428.0|76|1|anti-sense	L1M2_dup9102|chr21:15781465-15783675:+|1.9878716944661228|0.1805436335784144|3.46|428.0|76|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	575.843017578125	2	575.843905	1149.67326	-2.8608	-0.0016474	1.5855	0.00091302	-1.2753	-0.00073435	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.65476	1	14630	14630		25.45	1.2474	1	356230			37005	14551	30504	30530	40401	40401					0.10440720152632821
LWIRLKNIWLM	11	Unmodified	_LWIRLKNIWLM_					0	0	0		SEMA3E|p.Q570Sfs*24|1|0.08|ENSG00000170381|chr7:83387011-83387011|A/-|frameshift_variant	SEMA3E|p.Q570Sfs*24|1|0.08|ENSG00000170381|chr7:83387011-83387011|A/-|frameshift_variant	SEMA3E|p.Q570Sfs*24|1|0.08|ENSG00000170381|chr7:83387011-83387011|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	495.95916748046875	3	495.963609	1484.869	-6.9468	-0.0034453	-2.9112	-0.0014439	-9.858	-0.0048892	495.96210445138047	163.05	2.2058	161.66	160.17	162.38	-1.3926					163	48	5	0	0	0	0.72542	1	14269	14269		10.104	0.8921	1	227040			37006	32806	30505	30531	40402	40402					0.14595685606650477
LWKGPLRLS	9	Unmodified	_LWKGPLRLS_					0	0	0		ENST00000416709.1_1_6:168687664-168688738:-|nuORF	ENST00000416709.1_1_6:168687664-168688738:-|nuORF	ENST00000416709.1_1_6:168687664-168688738:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.3272094726562	2	535.329476	1068.6444	-0.57138	-0.00030588	-4.038	-0.0021617	-4.6094	-0.0024675	535.3273569849397	60.036	1.8717	56.606	56.259	58.131	-3.43					104	37	4	0	0	0	0.5811	1	4109	4109		34.173	0.25091	1	1821400			37007	11611	30506	30532	40403	40403					0.11282318847838724
LWKLLDPRLI	10	Unmodified	_LWKLLDPRLI_					0	0	0		ENST00000595138.1_1_19:43519232-43530599:-|nuORF;ENST00000594655.5_1_19:43519232-43530590:-|nuORF	ENST00000595138.1_1_19:43519232-43530599:-|nuORF	ENST00000595138.1_1_19:43519232-43530599:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	422.9383544921875	3	422.935936	1265.78598	1.8616	0.00078733	3.6374	0.0015384	5.499	0.0023257	422.9374241710858	65.237	0.81045	62.291	61.895	62.705	-2.9459					31	15	3	0	0	0	0.77834	1	2589	2589		21.686	4.519	1	28121			37008	14165	30507	30533	40404	40404					0.16371692150323724
LWKLLDPRLI	10	Unmodified	_LWKLLDPRLI_					0	0	0		ENST00000595138.1_1_19:43519232-43530599:-|nuORF;ENST00000594655.5_1_19:43519232-43530590:-|nuORF	ENST00000595138.1_1_19:43519232-43530599:-|nuORF	ENST00000595138.1_1_19:43519232-43530599:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	422.935936	1265.78598	0.16449	6.9567E-05	5.3844	0.0022773	5.5489	0.0023468	423.2726299138684	64.721	0.42322	61.997	61.758	62.181	-2.7245	-0.14732	0.0018993	NaN	21.686	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25936			37009	14165	30507	30533							0.16371692150323724
LWKLRPRGAP	10	Unmodified	_LWKLRPRGAP_					0	0	0		L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|375|3|anti-sense	L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|375|3|anti-sense	L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|375|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.365234375	2	597.366924	1192.7193	-5.9659	-0.0035638	1.4188	0.00084756	-4.5471	-0.0027163	597.367901744175	160.25	0.83936	158.64	158.41	159.25	-1.6101					33	17	3	0	0	0	0.76627	1	15819	15819		23.042	1.0826	1	61230			37010	14750	30508	30534	40405	40405					0.13064501379085414
LWKPILLL	8	Unmodified	_LWKPILLL_					0	0	0			REV__ENSG00000162594|ENST00000347310|IL23R	REV__ENSG00000162594|ENST00000347310|IL23R	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3323974609375	2	498.336239	994.657924	-1.8174	-0.00090567	-2.9409	-0.0014655	-4.7582	-0.0023712	498.334772441205	125.12	4.2738	123.72	123.39	127.66	-1.3908					210	84	5	0	0	0	0.7043	1	12013	12013		42.474	0	1	4129000	+		37011	20750	30509	30535	40406	40406					0.16038176627102985
LWKSRIRVGI	10	Unmodified	_LWKSRIRVGI_					0	0	0			REV__ENSG00000144229|ENST00000409968|THSD7B	REV__ENSG00000144229|ENST00000409968|THSD7B	MULTI-MSMS	OvCa9_classI_Rep4_	4	614.3844604492188	2	614.387857	1226.76116	-5.2638	-0.003234	0.84649	0.00052008	-4.4173	-0.0027139	614.3881829227306	157.6	1.278	156.06	155.71	156.98	-1.545					89	35	4	0	0	0	0.86889	1	15631	15631		10.265	0	1	332270	+		37012	19897	30510	30536	40407	40407					0.15685057067594244
LWKVHIFTVI	10	Unmodified	_LWKVHIFTVI_					0	0	0		nc|ENSG00000033867|Q9Y6M7-4|SLC4A7;nc|ENSG00000033867|Q9Y6M7-2|SLC4A7;nc|ENSG00000033867|Q9Y6M7-9|SLC4A7;nc|ENSG00000033867|Q9Y6M7-6|SLC4A7;nc|ENSG00000033867|Q9Y6M7-13|SLC4A7;nc|ENSG00000033867|Q9Y6M7-12|SLC4A7;nc|ENSG00000033867|Q9Y6M7|SLC4A7;nc|ENSG00000033867|Q9Y6M7-8|SLC4A7;ENSG00000033867|ENST00000454389|SLC4A7;nc|ENSG00000033867|Q9Y6M7-5|SLC4A7;nc|ENSG00000033867|Q9Y6M7-3|SLC4A7;ENST00000465487.5_1_3:27418257-27433320:-|nuORF	nc|ENSG00000033867|Q9Y6M7-4|SLC4A7	nc|ENSG00000033867|Q9Y6M7-4|SLC4A7	MULTI-MSMS	OvCa9_classI_Rep2	2	628.3829956054688	2	628.381709	1254.74886	-3.3028	-0.0020754	4.3517	0.0027345	1.049	0.00065916	628.3842124119614	147.07	3.8366	146.85	145.03	148.87	-0.22696					134	76	2	0	0	0	0.71192	1	14856	14856		29.15	4.6304	1	131170			37013	1077	30511	30537	40408	40408					0.1316802060455302
LWLDGALLAR	10	Unmodified	_LWLDGALLAR_					0	0	0		nc|ENSG00000105122|Q86YV0-2|RASAL3;ENSG00000105122|ENST00000343625|RASAL3	nc|ENSG00000105122|Q86YV0-2|RASAL3	nc|ENSG00000105122|Q86YV0-2|RASAL3	MULTI-MSMS	OvCa9_classI_Rep3	3	564.331787109375	2	564.332216	1126.64988	-0.434	-0.00024492	-0.2749	-0.00015513	-0.7089	-0.00040006	564.3317149048064	118.34	1.4386	117.3	116.89	118.32	-1.0324					67	28	4	0	0	0	0.55359	1	8942	8942		47.657	5.2612	1	367330			37014	2422	30512	30538	40409	40409					0.09161997639648689
LWLFDLVL	8	Unmodified	_LWLFDLVL_					0	0	0			REV__L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|198|2|anti-sense	REV__L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|198|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8046875	2	509.802229	1017.5899	-0.41042	-0.00020923	3.4351	0.0017512	3.0247	0.001542	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.74361	1	13375	13375		29.842	8.1392	1	150140	+		37015	16058	30513	30539	40410	40410					0.08181306976405267
LWLGRRPL	8	Unmodified	_LWLGRRPL_					0	0	0			REV__ENST00000409726.5_1_2:238768318-238783297:+|nuORF	REV__ENST00000409726.5_1_2:238768318-238783297:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	505.81536865234375	2	505.816536	1009.61852	-0.48831	-0.00024699	-1.038	-0.00052503	-1.5263	-0.00077202	505.81591307909724	108.49	1.6556	107.29	106.96	108.61	-1.1978					47	31	2	0	0	0	0.68312	1	7753	7753		46.766	0.79419	1	405310	+		37016	19069	30514	30540	40411	40411					0.11409469396221539
LWLGWTVL	8	Unmodified	_LWLGWTVL_					0	0	0		ENST00000560010.1_1_15:96833853-96870526:-|nuORF;ENST00000560170.1_1_15:96828545-96870526:-|nuORF;ENST00000502125.6_1_15:96826128-96870526:-|nuORF	ENST00000560010.1_1_15:96833853-96870526:-|nuORF	ENST00000560010.1_1_15:96833853-96870526:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.286865234375	2	494.286746	986.558939	1.0873	0.00053743	-1.8604	-0.00091955	-0.77307	-0.00038212	494.2857084115825	84.709	2.1185	82.046	81.458	83.577	-2.6629					122	43	4	0	0	0	0.52992	1	7135	7135		74.517	8.0873	1	1920500			37017	12844	30515	30541	40412	40412					0.06512153662174569
LWLHILLI	8	Unmodified	_LWLHILLI_					0	0	0		ENSG00000158158|ENST00000377075|CNNM4	ENSG00000158158|ENST00000377075|CNNM4	ENSG00000158158|ENST00000377075|CNNM4	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.8299560546875	2	510.833863	1019.65317	-0.32483	-0.00016593	-3.9955	-0.002041	-4.3203	-0.002207	510.8317329543334	121.75	1.4156	120.4	120.11	121.52	-1.3479					49	27	2	0	0	0	0.64315	1	11502	11502		54.895	6.979	1	285320			37018	5935	30516	30542	40413	40413					0.1441329248433476
LWLLGRLLPM	10	Unmodified	_LWLLGRLLPM_					0	0	0			REV__ENST00000471168.1_1_7:55560881-55640496:-|nuORF	REV__ENST00000471168.1_1_7:55560881-55640496:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3680419921875	2	606.370287	1210.72602	-1.3399	-0.00081245	0.21226	0.00012871	-1.1276	-0.00068375	606.3703052098949	148.27	2.4393	146.84	145.43	147.87	-1.4351					149	49	5	0	0	0	0.74484	1	14540	14540		25.45	10.585	1	591330	+		37019	25576	30517	30543	40414	40414					0.12908678215444525
LWLLLHSTRV	10	Unmodified	_LWLLLHSTRV_					0	0	0			REV__ENST00000238714.7_1_2:60988922-60995939:+|nuORF	REV__ENST00000238714.7_1_2:60988922-60995939:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.37353515625	2	619.374415	1236.73428	-6.2744	-0.0038862	1.979	0.0012257	-4.2954	-0.0026604	619.3755572557021	159.71	1.0789	158.1	157.75	158.83	-1.6101					53	24	3	0	0	0	0.83835	1	15750	15750		14.137	1.3254	1	88655	+		37020	23819	30518	30544	40415	40415					0.12537948456406411
LWLLPGLAGLA	11	Unmodified	_LWLLPGLAGLA_					0	0	0		ENST00000425327.6_2_3:118619838-118620162:-|nuORF	ENST00000425327.6_2_3:118619838-118620162:-|nuORF	ENST00000425327.6_2_3:118619838-118620162:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	562.3419799804688	2	562.347335	1122.68012	-2.9015	-0.0016316	-4.2839	-0.002409	-7.1854	-0.0040407	562.3448419475409	142.33	4.504	141.32	140	144.5	-1.0106					205	90	3	0	0	0	0.69331	1	11791	11791		31.955	1.6371	1	106680			37021	11720	30519	30545	40416	40416					0.12368356304864392
LWLLQLGGL	9	Unmodified	_LWLLQLGGL_					0	0	0		ENST00000368457.2_1_1:154934129-154934222:-|nuORF	ENST00000368457.2_1_1:154934129-154934222:-|nuORF	ENST00000368457.2_1_1:154934129-154934222:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	506.8116455078125	2	506.813128	1011.6117	-1.285	-0.00065125	-4.265	-0.0021616	-5.55	-0.0028128	506.8109472666925	100.58	3.0909	98.975	98.659	101.75	-1.6053					152	59	4	0	0	0	0.19716	1	6838	6838		76.847	0.072494	1	2966100			37022	10872	30520	30546	40417	40417					0.10636111725011688
LWLLQLGGL	9	Unmodified	_LWLLQLGGL_					0	0	0		ENST00000368457.2_1_1:154934129-154934222:-|nuORF	ENST00000368457.2_1_1:154934129-154934222:-|nuORF	ENST00000368457.2_1_1:154934129-154934222:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.8415222167969	2	506.813128	1011.6117	-0.21144	-0.00010716	3.3473	0.0016965	3.1359	0.0015893	507.3155827942061	110.24	1.2482	109.1	108.66	109.91	-1.1444					63	23	4	0	0	0	0.027255	1	8004	8004		79.939	11.152	1	166330			37023	10872	30520	30546	40418	40418					0.10636111725011688
LWLPGKEL	8	Unmodified	_LWLPGKEL_					0	0	0		tr|A0A7D7AB64|A0A7D7AB64_9CLOTCation-transportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14125PE=4SV=1	tr|A0A7D7AB64|A0A7D7AB64_9CLOTCation-transportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14125PE=4SV=1	tr|A0A7D7AB64|A0A7D7AB64_9CLOTCation-transportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14125PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	478.28302001953125	2	478.284203	954.553853	-0.36164	-0.00017297	-4.1349	-0.0019777	-4.4966	-0.0021506	478.2821985086724	82.255	1.548	79.959	79.484	81.032	-2.2963					58	30	3	0	0	0	0.61436	2	4613	4613;4625		60.972	2.19	1	2863700			37024	36215	30521	30547	40419;40420	40419					0.07475849799561729
LWLRKIISWMI	11	Unmodified	_LWLRKIISWMI_					0	0	0		ENST00000392373.6_1_12:131306299-131311802:-|nuORF	ENST00000392373.6_1_12:131306299-131311802:-|nuORF	ENST00000392373.6_1_12:131306299-131311802:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	486.9586181640625	3	486.959976	1457.8581	-4.7826	-0.0023289	2.6764	0.0013033	-2.1062	-0.0010256	486.9610953135575	160.39	2.6298	160.16	159.25	161.88	-0.22696					128	53	4	0	0	0	0.72502	1	16344	16344		15.333	5.687	1	96650			37025	11219	30522	30548	40421	40421					0.14748283232393078
LWLSRELI	8	Unmodified	_LWLSRELI_					0	0	0			REV__ENST00000311322.8_1_8:19824553-19824622:+|nuORF	REV__ENST00000311322.8_1_8:19824553-19824622:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.2830200195312	2	515.30821	1028.60187	0.91472	0.00047136	-0.18507	-9.5367E-05	0.72966	0.000376	515.307493466996	106.87	0.98575	105.6	105.32	106.31	-1.267					38	19	3	0	0	0	0.028476	1	7608	7608		38.806	0	1	87975	+		37026	24349	30523	30549	40422	40422					0.08870923719609891
LWLTDKAN	8	Unmodified	_LWLTDKAN_					0	0	0			REV__ENSG00000139645|ENST00000267116|ANKRD52	REV__ENSG00000139645|ENST00000267116|ANKRD52	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2314453125	2	480.761092	959.507631	-0.02666	-1.2817E-05	-0.20552	-9.8807E-05	-0.23218	-0.00011162	480.76088493028993	51.191	0.84007	51.191	50.907	51.747	0					52	19	4	0	0	0	0.028476	1	4000	4000		35.618	0	1	4098100	+		37027	19627	30524	30550	40423	40423					0.026257848974637454
LWLWLQRWTRF	11	Unmodified	_LWLWLQRWTRF_					0	0	0			REV__nc|ENSG00000239900|P30566-2|ADSL	REV__nc|ENSG00000239900|P30566-2|ADSL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.3411254882812	3	535.633139	1603.87759	-1.1333	-0.00060706	1.4647	0.00078454	0.33135	0.00017748	535.6337520273979	48.274	0.41112	45.167	44.988	45.399	-3.1077					9	7	2	0	0	0	0.026488	1	2665	2665		6.3209	0	1	19426	+		37028	23434	30525	30551	40424	40424					0.09980375567488409
LWMATLPIKLP	11	Unmodified	_LWMATLPIKLP_					0	0	0		nc|ENSG00000177595|Q9HB75-5|PIDD1;nc|ENSG00000177595|Q9HB75-4|PIDD1;ENST00000534525.5_1_11:799959-803120:-|nuORF;ENST00000524486.5_1_11:799309-803120:-|nuORF;nc|ENSG00000177595|Q9HB75-3|PIDD1;nc|ENSG00000177595|Q9HB75-2|PIDD1;ENSG00000177595|ENST00000347755|PIDD1;nc|ENSG00000177595|Q9HB75-6|PIDD1;ENST00000527357.5_1_11:799959-801918:-|nuORF	nc|ENSG00000177595|Q9HB75-5|PIDD1	nc|ENSG00000177595|Q9HB75-5|PIDD1	MULTI-MSMS	OvCa9_classI_Rep3	3	641.88330078125	2	641.883227	1281.7519	-4.605	-0.0029559	3.1187	0.0020018	-1.4864	-0.00095408	641.8852528126143	150.24	3.761	149.29	147.05	150.81	-0.95119					231	74	4	0	0	0	0.72064	1	12727	12727		22.58	0.61977	1	246170			37029	7696	30526	30552	40425	40425					0.12229527667068396
LWNNELYY	8	Unmodified	_LWNNELYY_					0	0	0			REV__CACNA2D3-DAP3|1|fusion	REV__CACNA2D3-DAP3|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.7637329101562	2	557.763832	1113.51311	-0.29381	-0.00016388	0.31021	0.00017302	0.016397	9.1459E-06	557.7639087775158	99.968	1.2751	97.642	97.366	98.641	-2.3253					84	24	4	0	0	0	0.56113	1	8933	8933		71.378	7.1706	1	768980	+		37030	15731	30527	30553	40426	40426					-0.03910536310718271
LWNVLTWPRRP	11	Unmodified	_LWNVLTWPRRP_					0	0	0			REV__ENSG00000026652|ENST00000320285|AGPAT4	REV__ENSG00000026652|ENST00000320285|AGPAT4	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.94110107421875	3	479.941973	1436.80409	-0.35636	-0.00017103	-4.1201	-0.0019774	-4.4765	-0.0021485	479.94000628505	62.931	1.2977	59.473	59.21	60.508	-3.4577					77	26	4	0	0	0	0.70848	1	4409	4409		26.75	3.9683	1	1194900	+		37031	16572	30528	30554	40427	40427					0.10315827124986754
LWQGRDLCRA	10	Unmodified	_LWQGRDLCRA_					0	0	0			REV__nc|ENSG00000012048|P38398-6|BRCA1	REV__nc|ENSG00000012048|P38398-6|BRCA1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	406.24493408203125	3	406.545113	1216.61351	1.0153	0.00041277	-4.0298	-0.0016383	-3.0145	-0.0012255	406.54348157673616	82.945	0.77967	80.262	79.93	80.71	-2.683					22	15	2	0	0	0	0.027193	1	6923	6923		29.17	22.151	1	23959	+		37032	28705	30529	30555	40428	40428					0.013867974713093645
LWQLAKITE	9	Unmodified	_LWQLAKITE_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MSMS	OvCa99_classI_Rep5	1	551.3184814453125	2	551.318774	1100.623	-0.29195	-0.00016096	-4.0535	-0.0022348	-4.3454	-0.0023957	551.3162325465113	51.309	0.8391	51.309	50.949	51.788	0					38	19	3	0	0	0	0.29717	1	3960	3960		63.306	12.114	1	1467300			37033	2211	30530	30556	40429	40429					0.07670889028440797
LWQLKKGRKA	10	Unmodified	_LWQLKKGRKA_					0	0	0		ENST00000461503.2_1_3:27764114-27764180:-|nuORF	ENST00000461503.2_1_3:27764114-27764180:-|nuORF	ENST00000461503.2_1_3:27764114-27764180:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	614.3858032226562	2	614.387857	1226.76116	-4.8757	-0.0029956	0.43275	0.00026588	-4.4429	-0.0027297	614.3879084256669	157.16	1.131	155.99	155.65	156.79	-1.1707					59	27	4	0	0	0	0.81992	1	13535	13535		16.473	0	1	104880			37034	12181	30531	30557	40430	40430					0.15685057067594244
LWREQFYRYYQ	11	Unmodified	_LWREQFYRYYQ_					0	0	0		nc|ENSG00000159069|Q969U6-2|FBXW5;ENSG00000159069|ENST00000325285|FBXW5	nc|ENSG00000159069|Q969U6-2|FBXW5	nc|ENSG00000159069|Q969U6-2|FBXW5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.26220703125	4	413.705854	1650.79431	0.15732	6.5085E-05	-4.0041	-0.0016565	-3.8468	-0.0015914	413.7042108773845	20.094	0.46946	18.755	18.637	19.107	-1.3386					14	9	2	0	0	0	0.026461	1	45	45		8.7993	5.1802	1	9764.4			37035	5983	30532	30558	40431	40431					-0.005054056709923316
LWRLGWPS	8	Unmodified	_LWRLGWPS_					0	0	0		ENST00000339142.6_2_17:77020254-77040169:+|nuORF;PORCN|p.L47W|1|0.08|ENSG00000102312|chrX:48511298-48511298|T/G|missense_variant	ENST00000339142.6_2_17:77020254-77040169:+|nuORF	ENST00000339142.6_2_17:77020254-77040169:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	507.7785339355469	2	507.779619	1013.54469	-2.4343	-0.0012361	0.95414	0.00048449	-1.4801	-0.00075158	507.7799378627202	140.33	1.3285	139.29	138.64	139.97	-1.0339					59	26	4	0	0	0	0.73938	1	11569	11569		31.955	0	1	82161			37036	10545	30533	30559	40432	40432					0.03845501233911364
LWRLVGVL	8	Unmodified	_LWRLVGVL_					0	0	0		ENST00000487411.5_1_16:31044934-31045651:+|nuORF	ENST00000487411.5_1_16:31044934-31045651:+|nuORF	ENST00000487411.5_1_16:31044934-31045651:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.2957458496094	2	478.308013	954.601472	2.63	0.001258	0.3505	0.00016765	2.9806	0.0014256	478.3060498158419	97.208	0.25842	97.208	97.008	97.267	0					8	5	2	0	0	0	0.028476	1	10657	10657		31.579	1.7373	1	74596			37037	12643	30534	30560	40433	40433					0.12235548790420125
LWRQRQEWQER	11	Unmodified	_LWRQRQEWQER_					0	0	0		ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	MULTI-SECPEP	OvCa9_classI_Rep2	2	538.863037109375	3	538.946445	1613.81751	-0.23656	-0.00012749	-3.6192	-0.0019506	-3.8558	-0.0020781	538.9438613154936	132.21	0.19637	131.98	131.83	132.03	-0.22696					5	3	2	0	0	0	0.026512	1	13029	13029		5.4129	0	1	5729.3			37038	6013	30535	30561	40434	40434					0.03515033166308967
LWRRRELWFWW	11	Unmodified	_LWRRRELWFWW_					0	0	0		ENST00000246635.7_1_17:39661629-39661743:-|nuORF	ENST00000246635.7_1_17:39661629-39661743:-|nuORF	ENST00000246635.7_1_17:39661629-39661743:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.7966918945312	3	578.644038	1732.91028	2.4788	0.0014343	-0.73091	-0.00042294	1.7479	0.0010114	578.6437717443285	99.086	0.60372	99.086	98.801	99.405	0					20	14	2	0	0	0	0.026497	1	10952	10952		6.001	5.6296	1	331390			37039	9778	30536	30562	40435	40435					0.07314582690332827
LWRSCAHNEK	10	Unmodified	_LWRSCAHNEK_					0	0	0			REV__BBS12|p.G567R|1|0.09|ENSG00000181004|chr4:122743591-122743591|G/A|missense_variant	REV__BBS12|p.G567R|1|0.09|ENSG00000181004|chr4:122743591-122743591|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.561767578125	3	415.204868	1242.59277	0.048558	2.0162E-05	-3.0021	-0.0012465	-2.9535	-0.0012263	415.5373433714568	25.639	0.1495	25.639	25.544	25.693	0					4	2	2	0	0	0	0.027225	1	582	582		29.551	6.1728	1	4711.6	+		37040	15694	30537	30563	40436	40436					-0.01881792908375246
LWSPVWQV	8	Unmodified	_LWSPVWQV_					0	0	0			REV__AluSz_dup66644|chr12:32351204-32351515:+|1.092123951942744|0.2135338694925806|2.35|429.0|17|2|anti-sense	REV__AluSz_dup66644|chr12:32351204-32351515:+|1.092123951942744|0.2135338694925806|2.35|429.0|17|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.8141784667969	2	507.774003	1013.53345	-1.3358	-0.00067828	0.55698	0.00028282	-0.77881	-0.00039546	507.774238051672	73.22	0.72595	69.824	69.591	70.317	-3.3961					23	14	2	0	0	0	0.028476	1	5721	5721		50.025	9.4519	1	58312	+		37041	15617	30538	30564	40437	40437					0.02722679139765205
LWSRLALL	8	Unmodified	_LWSRLALL_					0	0	0			REV__ENST00000469926.5_1_7:95045599-95064308:-|nuORF	REV__ENST00000469926.5_1_7:95045599-95064308:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	486.30517578125	2	486.30547	970.596387	0.60247	0.00029298	-1.3637	-0.00066315	-0.76119	-0.00037017	486.3047947264386	124.97	2.7662	124.74	124.37	127.13	-0.2359					156	55	5	0	0	0	0.6962	1	12258	12258		44.117	4.864	1	3410600	+		37042	26252	30539	30565	40438	40438					0.10991244927799926
LWTMRPMEI	9	Oxidation (M)	_LWTM(Oxidation (M))RPMEI_		LWTM(0.996)RPM(0.004)EI		LWTM(24)RPM(-24)EI	0	0	1			REV__ENST00000525531.5_1_11:117070349-117070406:+|nuORF	REV__ENST00000525531.5_1_11:117070349-117070406:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	596.798583984375	2	596.796294	1191.57804	1.9433	0.0011597	2.3504	0.0014027	4.2937	0.0025625	596.7975336873621	126.34	0.74035	126.34	126.09	126.83	0					30	15	3	0	0	0	0.13482	1	14597	14597		87.754	8.0417	2	351050	+		37043	27112	30540	30566	40439	40439		601			-0.010090011007150679
LWTYTSALV	9	Unmodified	_LWTYTSALV_					0	0	0			REV__sp|P09719|US14_HCMVAUncharacterizedproteinHVLF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US14PE=3SV=2	REV__sp|P09719|US14_HCMVAUncharacterizedproteinHVLF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US14PE=3SV=2	MULTI-MSMS	OvCa9_classI_Rep2	2	527.2819213867188	2	527.2844	1052.55425	-1.0628	-0.00056039	-3.0304	-0.0015979	-4.0932	-0.0021583	527.2826541808121	56.719	1.6865	53.915	53.374	55.06	-2.804					115	33	5	0	0	0	0.21395	2	4017	4017;4041		73.975	9.7675	1	682000	+		37044	29401	30541	30567	40440;40441	40440					0.030072247287534992
LWVALLVP	8	Unmodified	_LWVALLVP_					0	0	0			REV__ENST00000358625.3_1_9:137023968-137024280:+|nuORF	REV__ENST00000358625.3_1_9:137023968-137024280:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	455.69287109375	2	455.791664	909.568775	0.041338	1.8841E-05	-0.037553	-1.7116E-05	0.0037843	1.7249E-06	455.78956754727983	60.501	0.54473	60.501	60.314	60.859	0					34	12	4	0	0	0	0.028476	1	5326	5326		43.626	29.851	1	313770	+		37045	24804	30542	30568	40442	40442					0.1103734166756567
LWVNRPWR	8	Unmodified	_LWVNRPWR_					0	0	0		nc|ENSG00000284690|A0A0K2S4Q6|CD300H	nc|ENSG00000284690|A0A0K2S4Q6|CD300H	nc|ENSG00000284690|A0A0K2S4Q6|CD300H	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.7734375	2	563.817067	1125.61958	2.471	0.0013932	0.64286	0.00036245	3.1139	0.0017557	564.3179266665442	136.82	0.38336	136.82	136.68	137.06	0					9	7	2	0	0	0	0.028476	1	15973	15973		26.796	16.531	1	79773			37046	15378	30543	30569	40443	40443					0.06179683765117261
LWVREGVL	8	Unmodified	_LWVREGVL_					0	0	0			REV__ENST00000454376.6_1_19:50187319-50188233:+|nuORF	REV__ENST00000454376.6_1_19:50187319-50188233:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	486.28924560546875	2	486.287277	970.560001	-0.051282	-2.4938E-05	3.5969	0.0017491	3.5456	0.0017242	486.28890972170547	95.271	2.7144	94.243	93.482	96.196	-1.0281					110	54	3	0	0	0	0.61758	1	8598	8598		60.294	4.7898	1	2640800	+		37047	26003	30544	30570	40444	40444					0.07354368031099057
LWWLYFHLWLS	11	Unmodified	_LWWLYFHLWLS_					0	0	0			REV__ENST00000521938.5_1_8:27950677-27967964:+|nuORF	REV__ENST00000521938.5_1_8:27950677-27967964:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8017578125	3	521.943091	1562.80744	1.5885	0.00082912	1.4389	0.00075104	3.0275	0.0015802	522.2780878570198	100.31	0.38171	100.31	100.11	100.49	0					13	8	2	0	0	0	0.026344	1	11117	11117		14.086	0.57807	1	197760	+		37048	27079	30545	30571	40445	40445					0.04855077179036016
LWWPCLLL	8	Unmodified	_LWWPCLLL_					0	0	0			REV__nc|ENSG00000125247|Q5T4D3-2|TMTC4	REV__nc|ENSG00000125247|Q5T4D3-2|TMTC4	MULTI-SECPEP	OvCa9_classI_Rep3	3	522.7780151367188	2	522.290974	1042.56739	1.4019	0.00073221	-2.6551	-0.0013867	-1.2532	-0.00065452	522.289457699905	124.81	1.0941	123.75	123.07	124.16	-1.0519					28	20	3	0	0	0	0.028476	1	9728	9728		33.493	3.6514	1	23070	+		37049	18715	30546	30572	40446	40446					0.047813843071708106
LWWQPWWWKLQ	11	Unmodified	_LWWQPWWWKLQ_					0	0	0		chr12:54282820-54283827|429|63.1|0.0|22.59|+|1|HNRNPA1,HNRNPA1|1	chr12:54282820-54283827|429|63.1|0.0|22.59|+|1|HNRNPA1,HNRNPA1|1	chr12:54282820-54283827|429|63.1|0.0|22.59|+|1|HNRNPA1,HNRNPA1|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.8310546875	3	552.95399	1655.84014	2.0613	0.0011398	1.0717	0.00059262	3.133	0.0017324	553.2897806449749	76.836	0.44571	76.836	76.639	77.085	0					14	10	2	0	0	0	0.026497	1	7751	7751		9.6461	3.6451	1	145140			37050	323	30547	30573	40447	40447					0.03845284301883112
LWWWSWRWWKL	11	Unmodified	_LWWWSWRWWKL_					0	0	0		chr12:54282611-54283827|429|318.89|0.0|24.93|+|1|HNRNPA1,HNRNPA1|1	chr12:54282611-54283827|429|318.89|0.0|24.93|+|1|HNRNPA1,HNRNPA1|1	chr12:54282611-54283827|429|318.89|0.0|24.93|+|1|HNRNPA1,HNRNPA1|1	MULTI-MSMS	OvCa99_classI_Rep5	1	578.635498046875	3	578.301501	1731.88267	1.6809	0.00097204	-1.433	-0.00082873	0.24782	0.00014332	578.3006093393503	85.403	0.66167	85.403	85.169	85.83	0					32	15	3	0	0	0	0.7257	1	8953	8953		6.3209	3.7869	1	1908900			37051	321	30548	30574	40448	40448					0.04600679430109267
LWYLIKWIWIH	11	Unmodified	_LWYLIKWIWIH_					0	0	0		TRPC4|p.T675I|1|0.12|ENSG00000133107|chr13:37651320-37651320|G/A|missense_variant	TRPC4|p.T675I|1|0.12|ENSG00000133107|chr13:37651320-37651320|G/A|missense_variant	TRPC4|p.T675I|1|0.12|ENSG00000133107|chr13:37651320-37651320|G/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.3155517578125	3	524.302619	1569.88603	-0.80434	-0.00042172	-0.46433	-0.00024345	-1.2687	-0.00066517	524.302766706404	56.126	1.3172	52.831	52.412	53.73	-3.2944					49	25	3	0	0	0	0.026505	1	3599	3599		9.2118	6.0005	1	82499			37052	36283	30549	30575	40449	40449					0.12387929484134474
LYADQSYAL	9	Unmodified	_LYADQSYAL_					0	0	0			REV__ARHGAP21|p.S209Yfs*11|1|0.06|ENSG00000107863|chr10:24621269-24621270|-/T|frameshift_variant;REV__nc|ENSG00000275832|Q9P227-2|ARHGAP23	REV__nc|ENSG00000275832|Q9P227-2|ARHGAP23	MULTI-MSMS	OvCa99_classI_Rep5	1	522.2571411132812	2	522.25584	1042.49713	2.0638	0.0010778	0.14727	7.6914E-05	2.2111	0.0011547	522.2557744344119	75.082	0.60501	75.082	74.802	75.407	0					36	14	4	0	0	0	0.12365	1	7458	7458		90.777	3.0802	1	2157000	+		37053	23627;15653	30550	30576	40450	40450					-0.022422425476406715
LYADQSYAL	9	Unmodified	_LYADQSYAL_					0	0	0			REV__ARHGAP21|p.S209Yfs*11|1|0.06|ENSG00000107863|chr10:24621269-24621270|-/T|frameshift_variant;REV__nc|ENSG00000275832|Q9P227-2|ARHGAP23	REV__nc|ENSG00000275832|Q9P227-2|ARHGAP23	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	522.25584	1042.49713	2.0638	0.0010778	0.14727	7.6914E-05	2.2111	0.0011547	522.2557744344119	75.082	0.60501	75.082	74.802	75.407	0	0	0	NaN	90.777	36	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2157000	+		37054	23627;15653	30550	30576							-0.022422425476406715
LYADVGGKQF	10	Unmodified	_LYADVGGKQF_					0	0	0		ENST00000460616.5_1_X:153061851-153063636:+|nuORF;ENST00000485612.5_1_X:153061851-153063885:+|nuORF;ENSG00000180879|ENST00000370086|SSR4	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	ENST00000460616.5_1_X:153061851-153063636:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	549.2862548828125	2	549.284931	1096.55531	2.1761	0.0011953	0.0057326	3.1488E-06	2.1818	0.0011985	549.2847339041696	80.21	1.3407	80.21	79.907	81.248	0					85	31	5	0	0	0	0.17251	1	8218	8218		98.582	13.421	1	14481000			37055	7893	30551	30577	40451	40451					0.010894390976773138
LYAFLRLSR	9	Unmodified	_LYAFLRLSR_					0	0	0		ENSG00000182885|ENST00000333493|ADGRG3	ENSG00000182885|ENST00000333493|ADGRG3	ENSG00000182885|ENST00000333493|ADGRG3	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.7864990234375	2	569.840208	1137.66586	3.9031	0.0022241	-3.1914	-0.0018186	0.71167	0.00040554	570.3400248489288	88.339	0.29668	88.339	88.13	88.426	0					8	6	2	0	0	0	0.027462	1	9372	9372		23.042	1.0826	1	112140			37056	8033	30552	30578	40452	40452					0.10253703876537656
LYAGGVIYPK	10	Unmodified	_LYAGGVIYPK_					0	0	0		tr|A0A7D7A450|A0A7D7A450_9CLOTN-acetylmuramoyl-L-alanineamidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01780PE=4SV=1	tr|A0A7D7A450|A0A7D7A450_9CLOTN-acetylmuramoyl-L-alanineamidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01780PE=4SV=1	tr|A0A7D7A450|A0A7D7A450_9CLOTN-acetylmuramoyl-L-alanineamidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01780PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2813110351562	2	540.808042	1079.60153	2.0638	0.0011161	-4.1346	-0.002236	-2.0707	-0.0011199	540.8055415978189	76.606	0.5181	76.606	76.443	76.961	0					27	12	3	0	0	0	0.026939	1	7716	7716		31.955	8.9124	1	1002200			37057	36136	30553	30579	40453	40453					0.06491503999745873
LYAIHYEL	8	Unmodified	_LYAIHYEL_					0	0	0			REV__FXR1|p.T411Nfs*4|1|0.24|ENSG00000114416|chr3:180968080-180968081|-/A|frameshift_variant	REV__FXR1|p.T411Nfs*4|1|0.24|ENSG00000114416|chr3:180968080-180968081|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.2678527832031	2	511.271293	1020.52803	-0.47461	-0.00024266	-3.4145	-0.0017457	-3.8891	-0.0019884	511.2693055881392	89.061	1.1349	86.458	86.237	87.371	-2.6027					61	22	3	0	0	0	0.64377	1	7641	7641		54.765	5.3231	1	494480	+		37058	18186	30554	30580	40454	40454					0.01858955557270292
LYAKPPPTIN	10	Unmodified	_LYAKPPPTIN_					0	0	0		CON__Q8IUT8	CON__Q8IUT8	CON__Q8IUT8	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.3316650390625	2	557.318774	1112.623	2.2103	0.0012318	0.21476	0.00011969	2.425	0.0013515	557.3189256150339	118.42	0.563	118.42	118.16	118.72	0					21	11	3	0	0	0	0.026659	1	13611	13611		64.207	14.766	1	127830		+	37059	660	30555	30581	40455	40455					0.07118889028470221
LYALIERI	8	Unmodified	_LYALIERI_					0	0	0			REV__nc|ENSG00000166473|Q7Z442-2|PKD1L2	REV__nc|ENSG00000166473|Q7Z442-2|PKD1L2	MULTI-MSMS	OvCa9_classI_Rep3	3	495.80206298828125	2	495.80276	989.590967	-0.76597	-0.00037977	0.65179	0.00032316	-0.11417	-5.6607E-05	495.8028976709344	116.21	1.7313	115.17	114.9	116.63	-1.0414					66	34	3	0	0	0	0.33245	1	8665	8665		101.21	12.569	1	142870	+		37060	28980	30556	30582	40456	40456					0.09575521345323068
LYALRMEP	8	Unmodified	_LYALRMEP_					0	0	0			REV__tr|A0A553SSK4|A0A553SSK4_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03080PE=4SV=1	REV__tr|A0A553SSK4|A0A553SSK4_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03080PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.3026428222656	2	496.76532	991.516088	1.6086	0.00079908	-2.4279	-0.0012061	-0.81938	-0.00040704	496.7636677665453	92.546	0.79823	92.546	91.964	92.762	0					26	18	2	0	0	0	0.028476	1	9932	9932		42.474	6.8562	1	133200	+		37061	30843	30557	30583	40457	40457					0.01999015542435245
LYAMCITPSR	10	Unmodified	_LYAMCITPSR_					0	0	0			REV__ENSG00000138166|ENST00000369583|DUSP5	REV__ENSG00000138166|ENST00000369583|DUSP5	MULTI-MSMS	OvCa99_classI_Rep5	1	577.7902221679688	2	577.788469	1153.56239	1.9871	0.0011481	-0.085264	-4.9265E-05	1.9018	0.0010988	577.7880883850029	80.54	1.0582	80.54	80.314	81.372	0					58	24	4	0	0	0	0.46756	1	8263	8263		58.782	0.55203	1	2373600	+		37062	19519	30558	30584	40458	40458					-0.008252876177948565
LYANLIQSA	9	Unmodified	_LYANLIQSA_					0	0	0			REV__ENSG00000100373|ENST00000216211|UPK3A	REV__ENSG00000100373|ENST00000216211|UPK3A	MULTI-MSMS	OvCa99_classI_Rep5	1	496.77667236328125	2	496.7742	991.533846	1.8647	0.00092635	2.1654	0.0010757	4.0302	0.0020021	496.7748478609664	137.73	0.80858	137.73	137.4	138.21	0					29	17	3	0	0	0	0.40667	1	16070	16070		51.335	0	1	75644	+		37063	17409	30559	30585	40459	40459					0.03774054068958321
LYANMFERL	9	Unmodified	_LYANMFERL_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	OvCa99_classI_Rep5	1	578.7960205078125	2	578.794609	1155.57467	1.0693	0.00061889	0.45843	0.00026534	1.5277	0.00088422	578.7947039884338	111.29	1.4056	111.29	110.94	112.34	0					76	30	4	0	0	0	0.10502	2	12658	12634;12658		95.815	22.936	1	2537000			37064	829	30560	30586	40460;40461	40461					0.003100721169175813
LYAQIPPIE	9	Unmodified	_LYAQIPPIE_					0	0	0		ENSG00000119661|ENST00000553645|DNAL1	ENSG00000119661|ENST00000553645|DNAL1	ENSG00000119661|ENST00000553645|DNAL1	MULTI-MSMS	OvCa99_classI_Rep5	1	522.2908325195312	2	522.292225	1042.5699	0.77968	0.00040722	-0.90383	-0.00047206	-0.12415	-6.4842E-05	522.2916594602223	146.1	0.44891	146.1	145.93	146.38	0					17	8	3	0	0	0	0.34496	1	17093	17093		57.811	11.859	1	80520			37065	3378	30561	30587	40462	40462					0.05031511245783804
LYAQKLVTQ	9	Unmodified	_LYAQKLVTQ_					0	0	0		ENST00000448213.2_1_1:81967523-81968357:+|nuORF;nc|ENSG00000179361|Q8IVW6-3|ARID3B;ENSG00000179361|ENST00000346246|ARID3B;nc|ENSG00000179361|Q8IVW6|ARID3B;ENST00000569680.1_1_15:74833658-74865607:+|nuORF	ENST00000448213.2_1_1:81967523-81968357:+|nuORF	ENST00000448213.2_1_1:81967523-81968357:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	532.3123779296875	2	532.310949	1062.60735	-0.48537	-0.00025837	4.381	0.0023321	3.8957	0.0020737	532.3131053813366	131.85	2.9469	131.62	131.2	134.15	-0.22696					143	59	4	0	0	0	0.28934	1	13043	13043		64.207	14.766	1	652480			37066	7817	30562	30588	40463	40463					0.0785460251142922
LYAQLSKSSVL	11	Unmodified	_LYAQLSKSSVL_					0	0	0		PPARGC1A|p.D414Mfs*21|1|0.05|ENSG00000109819|chr4:23814243-23814243|C/-|frameshift_variant;ENST00000509702.5_1_4:23766811-23826805:-|nuORF;nc|ENSG00000109819|Q9UBK2-9|PPARGC1A;nc|ENSG00000109819|Q9UBK2-4|PPARGC1A;ENSG00000109819|ENST00000264867|PPARGC1A;nc|ENSG00000109819|Q9UBK2-3|PPARGC1A	PPARGC1A|p.D414Mfs*21|1|0.05|ENSG00000109819|chr4:23814243-23814243|C/-|frameshift_variant	PPARGC1A|p.D414Mfs*21|1|0.05|ENSG00000109819|chr4:23814243-23814243|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	403.566650390625	3	403.567689	1207.68124	0.78804	0.00031803	-3.2004	-0.0012916	-2.4124	-0.00097357	403.5663663263542	33.748	0.62583	33.748	33.583	34.209	0					26	12	3	0	0	0	0.58642	1	1574	1574		45.908	3.512	1	383790			37067	2738	30563	30589	40464	40464					0.08570525883101254
LYASYAANL	9	Unmodified	_LYASYAANL_					0	0	0			REV__ENSG00000127666|ENST00000248244|TICAM1	REV__ENSG00000127666|ENST00000248244|TICAM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.7982177734375	2	493.2531	984.491647	-0.83014	-0.00040947	3.0132	0.0014863	2.1831	0.0010768	493.2531480229672	49.473	0.17726	49.473	49.33	49.507	0					5	3	2	0	0	0	0.027462	1	3698	3698		38.806	1.647	1	75904	+		37068	18824	30564	30590	40465	40465					-0.0012192133945063688
LYATLLQNK	9	Unmodified	_LYATLLQNK_					0	0	0			REV__ENST00000540627.5_1_17:45748083-45748170:+|nuORF	REV__ENST00000540627.5_1_17:45748083-45748170:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	532.313232421875	2	532.310949	1062.60735	-0.48537	-0.00025837	4.381	0.0023321	3.8957	0.0020737	532.3131053813366	131.85	2.9469	131.62	131.2	134.15	-0.22696					143	59	4	0	0	0	0.40667	1	13031	13031		51.335	3.6781	1	652480	+		37069	27353	30565	30591	40466	40466					0.07854602511406483
LYAWPLLE	8	Unmodified	_LYAWPLLE_					0	0	0		ENSG00000156787|ENST00000287380|TBC1D31;nc|ENSG00000156787|Q96DN5-3|TBC1D31;nc|ENSG00000156787|Q96DN5-2|TBC1D31;ENST00000524307.5_1_8:124089445-124141439:+|nuORF	ENSG00000156787|ENST00000287380|TBC1D31	ENSG00000156787|ENST00000287380|TBC1D31	MULTI-SECPEP	OvCa9_classI_Rep3	3	503.7647705078125	2	502.776211	1003.53787	-1.3278	-0.00066759	-4.2786	-0.0021512	-5.6064	-0.0028188	502.775303346141	93.946	0.30617	91.985	91.832	92.138	-1.9617					7	5	2	0	0	0	0.028476	1	6025	6025		39.021	10.767	1	5723.3			37070	5856	30566	30592	40467	40467					0.03624143562649351
LYAYWALGR	9	Unmodified	_LYAYWALGR_					0	0	0			REV__ENST00000392595.6_1_11:134118193-134118331:-|nuORF	REV__ENST00000392595.6_1_11:134118193-134118331:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.9381103515625	2	556.798009	1111.58147	1.1953	0.00066556	4.4041	0.0024522	5.5994	0.0031177	557.3016359443029	153.62	0.73315	153.62	153.15	153.88	0					24	14	3	0	0	0	0.027462	1	17985	17985		26.796	7.4361	1	35253	+		37071	25265	30567	30593	40468	40468					0.030137530597812656
LYCGGNGKVF	10	Unmodified	_LYCGGNGKVF_					0	0	0			REV__ENST00000454652.6_1_3:183397159-183397345:+|nuORF	REV__ENST00000454652.6_1_3:183397159-183397345:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.2892456054688	2	529.260402	1056.50625	2.0514	0.0010857	-3.5073	-0.0018563	-1.4559	-0.00077057	529.2582994457471	79.804	1.7016	79.804	79.546	81.248	0					90	40	4	0	0	0	0.026822	1	8303	8303		47.916	12.297	1	28665000	+		37072	26006	30568	30594	40469	40469					-0.019741724629511737
LYCITLEEG	9	Unmodified	_LYCITLEEG_					0	0	0			REV__nc|ENSG00000185420|Q9H7B4-3|SMYD3;REV__KIF26B-SMYD3|3|fusion	REV__KIF26B-SMYD3|3|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.7784423828125	2	520.752075	1039.4896	-0.56804	-0.00029581	1.2285	0.00063976	0.6605	0.00034396	520.7523868976114	79.241	0.42779	76.49	76.322	76.75	-2.7514					16	8	2	0	0	0	0.027462	1	6451	6451		31.955	0	1	37937	+		37073	28337;22501	30569	30595	40470	40470					-0.028567181395601438
LYCLKPDLLG	10	Unmodified	_LYCLKPDLLG_					0	0	0			REV__ENST00000479979.1_1_1:167409855-167487702:-|nuORF	REV__ENST00000479979.1_1_1:167409855-167487702:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	567.8187866210938	2	567.81501	1133.61547	2.5549	0.0014507	2.9325	0.0016651	5.4874	0.0031158	567.816549094691	80.317	0.50038	80.317	79.987	80.487	0					21	11	2	0	0	0	0.58282	1	8240	8240		44.117	1.7207	1	981410	+		37074	23068	30570	30596	40471	40471					0.054004134365186474
LYCLVIFCF	9	Unmodified	_LYCLVIFCF_					0	0	0		ENST00000497508.1_1_2:669582-669891:-|nuORF	ENST00000497508.1_1_2:669582-669891:-|nuORF	ENST00000497508.1_1_2:669582-669891:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	561.267333984375	2	560.782124	1119.5497	0.18655	0.00010461	-2.1865	-0.0012261	-1.9999	-0.0011215	560.7801290808452	54.355	0.25577	51.107	50.927	51.183	-3.2474					9	4	3	0	0	0	0.027462	1	3369	3369		29.842	0.67148	1	8059.9			37075	12810	30571	30597	40472	40472					-0.0052969901003052655
LYCVQTGGKN	10	Unmodified	_LYCVQTGGKN_					0	0	0		nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF	nc|ENSG00000180764|A2A3N6|PIPSL	nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-MSMS	OvCa99_classI_Rep5	1	541.7702026367188	2	541.768591	1081.52263	-0.42197	-0.00022861	-0.67058	-0.0003633	-1.0925	-0.00059191	541.7681822981699	103.49	2.1308	103.49	103.18	105.31	0					109	49	4	0	0	0	0.58067	1	11624	11624		44.377	0.26039	1	19154000			37076	12529	30572	30598	40473	40473					-0.014870912968262928
LYDGEDSLN	9	Unmodified	_LYDGEDSLN_					0	0	0		tr|A0A553SSV7|A0A553SSV7_NIACINDxxFmotiflipoproteinOS=NialliacirculansOX=1397GN=CEQ21_03695PE=4SV=1	tr|A0A553SSV7|A0A553SSV7_NIACINDxxFmotiflipoproteinOS=NialliacirculansOX=1397GN=CEQ21_03695PE=4SV=1	tr|A0A553SSV7|A0A553SSV7_NIACINDxxFmotiflipoproteinOS=NialliacirculansOX=1397GN=CEQ21_03695PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.7725219726562	2	513.224736	1024.43492	1.4915	0.00076548	0.73828	0.0003789	2.2298	0.0011444	513.2249547110433	83.646	0.80031	83.646	83.419	84.22	0					32	18	3	0	0	0	0.027462	1	8719	8719		49.442	12.282	1	713570			37077	34424	30573	30599	40474	40474					-0.07632013686588834
LYDIILKNF	9	Unmodified	_LYDIILKNF_					0	0	0		ENSG00000092010|ENST00000206451|PSME1	ENSG00000092010|ENST00000206451|PSME1	ENSG00000092010|ENST00000206451|PSME1	MULTI-MSMS	OvCa99_classI_Rep5	1	569.8306884765625	2	569.828975	1137.6434	1.9035	0.0010847	0.1317	7.5046E-05	2.0352	0.0011597	569.8288321946253	128.89	1.6854	128.89	128.51	130.2	0					77	35	4	0	0	0	0.013607	1	14950	14950		157.33	38.586	1	957040			37078	1881	30574	30600	40475	40475					0.08008059688290814
LYDIILQNL	9	Unmodified	_LYDIILQNL_					0	0	0		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;nc|ENSG00000167881|Q9UHB9-3|SRP68;ENST00000588736.1_1_17:74041371-74044231:-|nuORF	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.3040771484375	2	552.818607	1103.62266	-0.35968	-0.00019884	-0.10251	-5.6667E-05	-0.46218	-0.0002555	552.8177521627846	103.59	0.88893	101.47	101.22	102.11	-2.1192					34	16	3	0	0	0	0.027462	1	9339	9339		30.504	7.4612	1	33922			37079	6846	30575	30601	40476	40476					0.07499469308618245
LYDKKVKLWHR	11	Unmodified	_LYDKKVKLWHR_					0	0	0			REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF;REV__nc|ENSG00000005156|P49916-4|LIG3	REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.9593505859375	3	495.961144	1484.8616	-6.4739	-0.0032108	1.3968	0.00069277	-5.0771	-0.002518	495.96176021125257	160.81	2.4584	159.2	158.19	160.65	-1.6101					153	57	4	0	0	0	0.7257	1	15930	15930		6.3209	0.31984	1	42976	+		37080	27958;16393	30576	30602	40477	40477					0.13856669330584737
LYDKNKDVV	9	Unmodified	_LYDKNKDVV_					0	0	0		tr|A0A7D6ZWD5|A0A7D6ZWD5_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17385PE=4SV=1	tr|A0A7D6ZWD5|A0A7D6ZWD5_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17385PE=4SV=1	tr|A0A7D6ZWD5|A0A7D6ZWD5_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17385PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.3289794921875	2	547.298039	1092.58152	1.5941	0.00087242	3.0013	0.0016426	4.5953	0.002515	547.299822842371	133.42	0.45892	133.42	133.26	133.72	0					13	9	2	0	0	0	0.027462	1	15552	15552		34.173	11.13	1	42990			37081	35837	30577	30603	40478	40478					0.038937082691290925
LYDLTESTPI	10	Unmodified	_LYDLTESTPI_					0	0	0			REV__ENST00000393800.6_2_11:68381280-68381436:+|nuORF	REV__ENST00000393800.6_2_11:68381280-68381436:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	575.8198852539062	2	576.295162	1150.57577	-1.8182	-0.0010478	-3.5795	-0.0020629	-5.3977	-0.0031107	576.2937049697084	101.19	0.44624	100.43	100.02	100.47	-0.76401					12	8	2	0	0	0	0.027147	1	9277	9277		21.96	1.013	1	40195	+		37082	25287	30578	30604	40479	40479					0.006505649668270053
LYDPVISKL	9	Unmodified	_LYDPVISKL_					0	0	0		nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	MULTI-MSMS	OvCa99_classI_Rep5	1	524.3104858398438	2	524.307875	1046.6012	1.6112	0.00084479	-0.050242	-2.6342E-05	1.561	0.00081845	524.307939083046	102.93	1.2199	102.93	102.47	103.69	0					62	28	4	0	0	0	0.29519	1	11486	11486		63.534	24.281	1	2336600			37083	8433	30579	30605	40480	40480					0.07976084279880524
LYDTSVATVY	10	Unmodified	_LYDTSVATVY_					0	0	0		nc|ENSG00000142609|Q9C0B2|CFAP74;ENSG00000142609|ENST00000682832|CFAP74	nc|ENSG00000142609|Q9C0B2|CFAP74	nc|ENSG00000142609|Q9C0B2|CFAP74	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.2835083007812	2	566.282054	1130.54956	1.3618	0.00077114	-0.9203	-0.00052115	0.44147	0.00025	566.2815200169551	97.822	1.6691	95.443	94.659	96.328	-2.3786					74	32	4	0	0	0	0.45225	1	8673	8673		60.972	4.2509	1	541550			37084	4982	30580	30606	40481	40481					-0.010497042046836214
LYDVSIEETR	10	Unmodified	_LYDVSIEETR_					0	0	0		tr|A0A553SL99|A0A553SL99_NIACIZn-dependentproteaseOS=NialliacirculansOX=1397GN=CEQ21_20125PE=4SV=1;tr|A0A553SUD7|A0A553SUD7_NIACIZincmetallopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_06830PE=4SV=1	tr|A0A553SL99|A0A553SL99_NIACIZn-dependentproteaseOS=NialliacirculansOX=1397GN=CEQ21_20125PE=4SV=1	tr|A0A553SL99|A0A553SL99_NIACIZn-dependentproteaseOS=NialliacirculansOX=1397GN=CEQ21_20125PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	613.296142578125	2	612.808968	1223.60338	1.6817	0.0010306	-0.61413	-0.00037634	1.0676	0.00065424	612.8092076808572	138.38	0.14565	138.38	138.26	138.4	0					4	2	2	0	0	0	0.026956	1	16145	16145		26.693	10.22	1	17038			37085	33702	30581	30607	40482	40482					0.00052468227022473
LYEGNTYEF	9	Unmodified	_LYEGNTYEF_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OvCa99_classI_Rep5	1	568.2542724609375	2	568.250754	1134.48696	2.7449	0.0015598	0.20716	0.00011772	2.9521	0.0016775	568.2506467198501	94.144	0.72148	94.144	93.883	94.604	0					37	16	4	0	0	0	0.28934	1	10226	10226		64.207	3.2353	1	1880800			37086	5793;36288	30582	30608	40483	40483					-0.07490850272847638
LYEIENVKL	9	Unmodified	_LYEIENVKL_					0	0	0			REV__tr|A0A7D6VQB7|A0A7D6VQB7_9CLOT3-oxoacidCoA-transferasesubunitAOS=ClostridiumintestinaleOX=36845GN=HZF06_20355PE=3SV=1	REV__tr|A0A7D6VQB7|A0A7D6VQB7_9CLOT3-oxoacidCoA-transferasesubunitAOS=ClostridiumintestinaleOX=36845GN=HZF06_20355PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	561.3212890625	2	560.816064	1119.61758	-1.3604	-0.00076296	2.8081	0.0015748	1.4476	0.00081186	561.3196477735637	103.85	1.0667	103.85	103.47	104.54	0					49	24	3	0	0	0	0.22621	1	11640	11640		71.877	3.0906	1	4383300	+		37087	31312	30583	30609	40484	40484					0.06255165445986677
LYEIENVKL	9	Unmodified	_LYEIENVKL_					0	0	0			REV__tr|A0A7D6VQB7|A0A7D6VQB7_9CLOT3-oxoacidCoA-transferasesubunitAOS=ClostridiumintestinaleOX=36845GN=HZF06_20355PE=3SV=1	REV__tr|A0A7D6VQB7|A0A7D6VQB7_9CLOT3-oxoacidCoA-transferasesubunitAOS=ClostridiumintestinaleOX=36845GN=HZF06_20355PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	560.816064	1119.61758	0.062352	3.4968E-05	-0.53551	-0.00030032	-0.47316	-0.00026536	560.8161148387725	105.01	0.93599	103.66	103.42	104.35	-1.3482	-0.090598	-0.0016319	NaN	71.877	20	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39065	+		37088	31312	30583	30609							0.06255165445986677
LYEIENVKLK	10	Unmodified	_LYEIENVKLK_					0	0	0			REV__tr|A0A7D6VQB7|A0A7D6VQB7_9CLOT3-oxoacidCoA-transferasesubunitAOS=ClostridiumintestinaleOX=36845GN=HZF06_20355PE=3SV=1	REV__tr|A0A7D6VQB7|A0A7D6VQB7_9CLOT3-oxoacidCoA-transferasesubunitAOS=ClostridiumintestinaleOX=36845GN=HZF06_20355PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	624.8650512695312	2	624.863546	1247.71254	0.15389	9.6158E-05	1.8113	0.0011318	1.9652	0.001228	624.8647952676429	114.67	0.97193	114.67	114.42	115.39	0					43	20	3	0	0	0	0.35539	1	13091	13091		82.241	1.7859	1	486020	+		37089	31312	30584	30610	40485	40485					0.0985909891717256
LYEIENVKLK	10	Unmodified	_LYEIENVKLK_					0	0	0			REV__tr|A0A7D6VQB7|A0A7D6VQB7_9CLOT3-oxoacidCoA-transferasesubunitAOS=ClostridiumintestinaleOX=36845GN=HZF06_20355PE=3SV=1	REV__tr|A0A7D6VQB7|A0A7D6VQB7_9CLOT3-oxoacidCoA-transferasesubunitAOS=ClostridiumintestinaleOX=36845GN=HZF06_20355PE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	624.863546	1247.71254	0.15389	9.6158E-05	1.8113	0.0011318	1.9652	0.001228	624.8647952676429	114.67	0.97193	114.67	114.42	115.39	0	0	0	NaN	82.241	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	486020	+		37090	31312	30584	30610							0.0985909891717256
LYEIRKQLQRR	11	Unmodified	_LYEIRKQLQRR_					0	0	0			REV__nc|ENSG00000204053|P12525|MYCLP1	REV__nc|ENSG00000204053|P12525|MYCLP1	MULTI-MSMS	OvCa9_classI_Rep2	2	501.6339111328125	3	501.63532	1501.88413	-5.5139	-0.002766	3.033	0.0015215	-2.4809	-0.0012445	501.63686894791874	162.29	1.9089	162.06	160.59	162.5	-0.22696					90	37	3	0	0	0	0.72582	1	16438	16438		3.6191	0	1	106580	+		37091	29097	30585	30611	40486	40486					0.15326268728199466
LYEKDIQLF	9	Unmodified	_LYEKDIQLF_					0	0	0		ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP;ENST00000514047.1_1_5:24171013-24171163:+|nuORF	ENSG00000166971|ENST00000394657|AKTIP	ENSG00000166971|ENST00000394657|AKTIP	MULTI-MSMS	OvCa99_classI_Rep5	1	584.817138671875	2	584.816064	1167.61758	1.0778	0.00063032	0.82796	0.00048421	1.9058	0.0011145	584.8163441188244	109.32	1.336	109.32	109.02	110.35	0					72	29	4	0	0	0	0.013371	2	12395	12373;12395		158.07	42.581	1	2031200			37092	6742	30586	30612	40487;40488	40488					0.04047165445990686
LYEKFFRD	8	Unmodified	_LYEKFFRD_					0	0	0		ENST00000439661.5_1_16:457533-461575:+|nuORF;nc|ENSG00000242612|Q9NUI1-3|DECR2;ENSG00000242612|ENST00000219481|DECR2	ENST00000439661.5_1_16:457533-461575:+|nuORF	ENST00000439661.5_1_16:457533-461575:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.8294677734375	2	559.287474	1116.5604	-0.66878	-0.00037404	4.0387	0.0022588	3.3699	0.0018847	559.2895981741863	44.064	0.79303	44.064	43.78	44.573	0					36	17	3	0	0	0	0.028476	1	3005	3005		45.952	0	1	1895900			37093	9367	30587	30613	40489	40489					0.006777429603062046
LYEKIRGQE	9	Unmodified	_LYEKIRGQE_					0	0	0		tr|A0A553SSV1|A0A553SSV1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03735PE=4SV=1	tr|A0A553SSV1|A0A553SSV1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03735PE=4SV=1	tr|A0A553SSV1|A0A553SSV1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03735PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	568.8095703125	2	568.308938	1134.60332	0.90941	0.00051683	-1.0224	-0.00058106	-0.11302	-6.4233E-05	568.8093701973515	105.68	1.5339	105.68	104.96	106.49	0					79	34	5	0	0	0	0.3076	1	11880	11880		62.107	1.1355	1	2388800			37094	34422	30588	30614	40490	40490					0.04140513017705416
LYEKPYPQ	8	Unmodified	_LYEKPYPQ_					0	0	0		ENSG00000254656|ENST00000649591|RTL1	ENSG00000254656|ENST00000649591|RTL1	ENSG00000254656|ENST00000649591|RTL1	MULTI-MSMS	OvCa99_classI_Rep5	1	519.7709350585938	2	519.26875	1036.52295	1.2041	0.00062526	0.98164	0.00050973	2.1858	0.001135	519.2690010819158	126.98	0.66779	126.98	126.61	127.27	0					25	14	3	0	0	0	0.59148	1	14673	14673		65.803	2.4969	1	331580			37095	9449	30589	30615	40491	40491					0.006146516946500924
LYELFKKDP	9	Unmodified	_LYELFKKDP_					0	0	0		ENSG00000155252|ENST00000370631|PI4K2A	ENSG00000155252|ENST00000370631|PI4K2A	ENSG00000155252|ENST00000370631|PI4K2A	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.8356323242188	2	576.818607	1151.62266	1.2932	0.00074594	0.94459	0.00054486	2.2378	0.0012908	576.8195035709969	127.26	0.39998	127.26	126.96	127.36	0					16	8	4	0	0	0	0.027462	1	14693	14693		31.955	0	1	238290			37096	5774	30590	30616	40492	40492					0.05291469308622254
LYEMILKL	8	Oxidation (M)	_LYEM(Oxidation (M))ILKL_		LYEM(1)ILKL		LYEM(120)ILKL	0	0	1			REV__ENSG00000096968|ENST00000381652|JAK2	REV__ENSG00000096968|ENST00000381652|JAK2	MULTI-MSMS	OvCa99_classI_Rep5	1	519.798828125	2	519.798829	1037.5831	-0.59881	-0.00031126	-2.3557	-0.0012245	-2.9545	-0.0015358	519.7975456252907	68.67	1.4422	68.67	68.356	69.798	0					90	34	4	0	0	0	0.25402	1	6480	6480		115.46	21.453	1	15850000	+		37097	17310	30591	30617	40493	40493		407			0.06581626033539578
LYENKKIAST	10	Unmodified	_LYENKKIAST_					0	0	0		ENST00000519677.1_1_5:78296041-78296494:-|nuORF	ENST00000519677.1_1_5:78296041-78296494:-|nuORF	ENST00000519677.1_1_5:78296041-78296494:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8233642578125	2	583.824421	1165.63429	-1.0594	-0.00061849	0.95126	0.00055537	-0.10811	-6.3117E-05	583.8248978197831	107.73	1.1962	106.5	106.18	107.38	-1.234					69	22	4	0	0	0	0.50999	1	7655	7655		52.937	1.744	1	399180			37098	13089	30592	30618	40494	40494					0.05809666331947483
LYEQHYRE	8	Unmodified	_LYEQHYRE_					0	0	0		ENSG00000163251|ENST00000295417|FZD5	ENSG00000163251|ENST00000295417|FZD5	ENSG00000163251|ENST00000295417|FZD5	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.3035278320312	2	569.269813	1136.52507	1.0333	0.00058821	-0.93672	-0.00053325	0.096544	5.4959E-05	569.2689783097806	132.68	0.85236	132.68	132.23	133.08	0					23	17	2	0	0	0	0.028476	1	15425	15425		60.972	13.315	1	64864			37099	6281	30593	30619	40495	40495					-0.03772919567518329
LYERVQPVF	9	Unmodified	_LYERVQPVF_					0	0	0			REV__ENSG00000183340|ENST00000332349|JRKL	REV__ENSG00000183340|ENST00000332349|JRKL	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8179321289062	2	575.816399	1149.61824	-0.88976	-0.00051234	3.3502	0.0019291	2.4605	0.0014168	575.8182150623272	93.926	1.9141	91.419	91.059	92.973	-2.5072					94	39	4	0	0	0	0.44294	1	8223	8223		47.916	1.9636	1	736500	+		37100	22357	30594	30620	40496	40496					0.04942004885697315
LYESFATLL	9	Unmodified	_LYESFATLL_					0	0	0		tr|A0A553SKV5|A0A553SKV5_NIACIDUF2711familyproteinOS=NialliacirculansOX=1397GN=CEQ21_19380PE=4SV=1	tr|A0A553SKV5|A0A553SKV5_NIACIDUF2711familyproteinOS=NialliacirculansOX=1397GN=CEQ21_19380PE=4SV=1	tr|A0A553SKV5|A0A553SKV5_NIACIDUF2711familyproteinOS=NialliacirculansOX=1397GN=CEQ21_19380PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.8323364257812	2	528.784233	1055.55391	-0.4471	-0.00023642	0.83255	0.00044024	0.38545	0.00020382	528.7825815431894	83.985	1.375	81.322	80.681	82.056	-2.6629					60	28	3	0	0	0	0.027456	1	7011	7011		47.916	0	1	100090			37101	33658	30595	30621	40497	40497					0.028358050089309472
LYEVSQLKD	9	Unmodified	_LYEVSQLKD_					0	0	0		nc|ENSG00000133313|Q96KP4-2|CNDP2;ENSG00000133313|ENST00000324262|CNDP2;CNDP2|p.A465V|1|0.11|ENSG00000133313|chr18:74520034-74520034|C/T|missense_variant	nc|ENSG00000133313|Q96KP4-2|CNDP2	nc|ENSG00000133313|Q96KP4-2|CNDP2	MULTI-MSMS	OvCa99_classI_Rep5	1	547.79150390625	2	547.790047	1093.56554	1.5153	0.00083008	0.13821	7.5712E-05	1.6535	0.00090579	547.7901065751695	74.782	0.77521	74.782	74.517	75.292	0					37	18	3	0	0	0	0.061524	2	7402	7402;7434		112.11	16.292	1	5075200			37102	4217	30596	30622	40498;40499	40498					0.02250002032269549
LYFAHGLF	8	Unmodified	_LYFAHGLF_					0	0	0		ENSG00000182836|ENST00000377801|PLCXD3	ENSG00000182836|ENST00000377801|PLCXD3	ENSG00000182836|ENST00000377801|PLCXD3	MULTI-SECPEP	OvCa9_classI_Rep2	2	484.2801208496094	2	484.255446	966.496338	-1.7134	-0.00082972	-2.5386	-0.0012293	-4.252	-0.0020591	484.2542082435506	85.109	1.7888	83.563	82.899	84.688	-1.5462					88	35	4	0	0	0	0.028476	1	7393	7393		43.626	3.0534	1	339630			37103	8029	30597	30623	40500	40500					0.011750075939971794
LYFAPKVL	8	Unmodified	_LYFAPKVL_					0	0	0		ENSG00000124279|ENST00000264669|FASTKD3	ENSG00000124279|ENST00000264669|FASTKD3	ENSG00000124279|ENST00000264669|FASTKD3	MULTI-MSMS	OvCa9_classI_Rep3	3	475.7866516113281	2	475.789121	949.56369	-1.1284	-0.0005369	-3.0222	-0.001438	-4.1507	-0.0019748	475.7874490810867	140.15	0.93607	139.11	138.74	139.68	-1.0339					36	18	3	0	0	0	0.74361	1	11533	11533		29.842	5.6388	1	94016			37104	3644	30598	30624	40501	40501					0.08689037804947475
LYFFTYIPYFF	11	Unmodified	_LYFFTYIPYFF_					0	0	0		ENSG00000167972|ENST00000301732|ABCA3;ENST00000563623.5_1_16:2339371-2378589:-|nuORF	ENSG00000167972|ENST00000301732|ABCA3;ENST00000563623.5_1_16:2339371-2378589:-|nuORF	ENSG00000167972|ENST00000301732|ABCA3	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.77813720703125	3	507.588202	1519.74278	-1.4546	-0.00073832	-2.6872	-0.001364	-4.1417	-0.0021023	507.5866657799542	63.951	0.27737	63.951	63.814	64.091	0					14	6	3	0	0	0	0.026158	1	5773	5773		20.837	1.2102	1	533050			37105	6854;13790	30599	30625	40502	40502					0.0036945758236015536
LYFHINQTL	9	Unmodified	_LYFHINQTL_					0	0	0		nc|ENSG00000133193|Q969W3|VCF1;ENSG00000133193|ENST00000405159|FAM104A	nc|ENSG00000133193|Q969W3|VCF1	nc|ENSG00000133193|Q969W3|VCF1	MULTI-MSMS	OvCa99_classI_Rep5	1	574.8104248046875	2	574.808574	1147.60259	1.4721	0.00084616	0.54637	0.00031406	2.0184	0.0011602	574.808680799629	108.91	0.82968	108.91	108.58	109.41	0					40	18	3	0	0	0	0.098892	2	12342	12319;12342		97.473	31.67	1	1099000			37106	4210	30600	30626	40503;40504	40504					0.03469718368660324
LYFHPFCL	8	Unmodified	_LYFHPFCL_					0	0	0		ENSG00000078589|ENST00000171757|P2RY10	ENSG00000078589|ENST00000171757|P2RY10	ENSG00000078589|ENST00000171757|P2RY10	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.7759399414062	2	520.257131	1038.49971	0.19314	0.00010048	2.4308	0.0012646	2.6239	0.0013651	520.2583863544246	97.722	1.1764	96.764	96.266	97.442	-0.95857					47	23	3	0	0	0	0.028476	1	8796	8796		24.504	0	1	77121			37107	1594	30601	30627	40505	40505					-0.018000656236608847
LYFKYRSL	8	Unmodified	_LYFKYRSL_					0	0	0			REV__ENSG00000156413|ENST00000318336|FUT6	REV__ENSG00000156413|ENST00000318336|FUT6	MULTI-MSMS	OvCa99_classI_Rep5	1	545.3109130859375	2	545.30821	1088.60187	1.8935	0.0010325	0.55627	0.00030334	2.4498	0.0013359	545.3083284613602	133.84	0.94003	133.84	133.53	134.47	0					32	19	2	0	0	0	0.66704	1	15572	15572		50.025	2.065	1	347920	+		37108	20476	30602	30628	40506	40506					0.06110923719620587
LYFLLMALF	9	Oxidation (M)	_LYFLLM(Oxidation (M))ALF_		LYFLLM(1)ALF		LYFLLM(73)ALF	0	0	1		WDFY3|p.Q3037Rfs*34|1|0.06|ENSG00000163625|chr4:84691725-84691725|T/-|frameshift_variant;WDFY3|p.S3365Qfs*9|1|0.07|ENSG00000163625|chr4:84678973-84678974|-/G|frameshift_variant;nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	WDFY3|p.Q3037Rfs*34|1|0.06|ENSG00000163625|chr4:84691725-84691725|T/-|frameshift_variant	WDFY3|p.Q3037Rfs*34|1|0.06|ENSG00000163625|chr4:84691725-84691725|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	574.3153076171875	2	573.817021	1145.61949	0.99969	0.00057364	-3.7764	-0.0021669	-2.7767	-0.0015933	574.3152735650629	115.06	1.6268	115.06	114.51	116.14	0					94	34	5	0	0	0	0.22187	1	13142	13142		72.62	11.648	1	3302600			37109	36302	30603	30629	40507	40507		786			0.05250502930243783
LYFLPRIEP	9	Unmodified	_LYFLPRIEP_					0	0	0			REV__ENST00000548283.6_1_12:112374453-112450904:-|nuORF	REV__ENST00000548283.6_1_12:112374453-112450904:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.2950439453125	2	574.329142	1146.64373	0.87385	0.00050188	0.91826	0.00052738	1.7921	0.0010293	574.3295410089028	131.51	0.47066	131.51	131.25	131.72	0					14	9	2	0	0	0	0.027392	1	15276	15276		63.306	0	1	105180	+		37110	23006	30604	30630	40508	40508					0.0762747940814279
LYFLRTKNGVV	11	Unmodified	_LYFLRTKNGVV_					0	0	0		nc|ENSG00000158764|Q8WWU7-2|ITLN2;ENSG00000158764|ENST00000368029|ITLN2	nc|ENSG00000158764|Q8WWU7-2|ITLN2	nc|ENSG00000158764|Q8WWU7-2|ITLN2	MULTI-MSMS	OvCa9_classI_Rep3	3	437.25604248046875	3	437.259079	1308.75541	-5.4916	-0.0024013	2.3727	0.0010375	-3.1189	-0.0013638	437.2603836543466	155.94	1.235	154.87	154.57	155.81	-1.073					54	30	2	0	0	0	0.72538	1	13424	13424		10.587	0.94066	1	23456			37111	5972	30605	30631	40509	40509					0.11337913765260055
LYFLSPGQLP	10	Unmodified	_LYFLSPGQLP_					0	0	0		ENSG00000154262|ENST00000284425|ABCA6;ENST00000590311.5_1_17:67101582-67103939:-|nuORF	ENSG00000154262|ENST00000284425|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.326416015625	2	567.813325	1133.6121	1.8404	0.001045	-2.6824	-0.0015231	-0.84204	-0.00047812	567.8115841803952	112.51	0.81508	112.51	112.06	112.88	0					36	17	4	0	0	0	0.026462	1	12839	12839		87.754	41.298	1	1215800			37112	5724	30606	30632	40510	40510					0.050634866541713563
LYFLSPGQLP	10	Unmodified	_LYFLSPGQLP_					0	0	0		ENSG00000154262|ENST00000284425|ABCA6;ENST00000590311.5_1_17:67101582-67103939:-|nuORF	ENSG00000154262|ENST00000284425|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	567.813325	1133.6121	0.60972	0.00034621	-4.7558	-0.0027004	-4.146	-0.0023542	568.3115579874913	113.76	0.36536	112.69	112.35	112.72	-1.0753	0.089023	-0.0020508	NaN	87.754	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10436			37113	5724	30606	30632							0.050634866541713563
LYFPSYIAVG	10	Unmodified	_LYFPSYIAVG_					0	0	0		tr|A0A7D6ZNC5|A0A7D6ZNC5_9CLOTEndosporegerminationpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15805PE=3SV=1	tr|A0A7D6ZNC5|A0A7D6ZNC5_9CLOTEndosporegerminationpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15805PE=3SV=1	tr|A0A7D6ZNC5|A0A7D6ZNC5_9CLOTEndosporegerminationpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15805PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.325439453125	2	565.30005	1128.58555	-0.88705	-0.00050145	-3.3051	-0.0018684	-4.1921	-0.0023698	565.298101382045	126.57	1.5444	125.16	124.92	126.47	-1.4143					34	30	2	0	0	0	0.026982	1	12092	12092		38.806	9.6566	1	30181			37114	35674	30607	30633	40511	40511					0.026397977628448643
LYFRIHLV	8	Unmodified	_LYFRIHLV_					0	0	0			REV__ENST00000306357.8_1_17:9471739-9479111:-|nuORF	REV__ENST00000306357.8_1_17:9471739-9479111:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	530.81640625	2	530.818744	1059.62294	0.30148	0.00016003	-4.2867	-0.0022755	-3.9853	-0.0021154	530.816354509631	72.1	2.7704	69.497	69.18	71.951	-2.6023					121	55	4	0	0	0	0.72922	1	3421	3421		37.028	0	1	935120	+		37115	24294	30608	30634	40512	40512					0.09550933819127749
LYGAVKHG	8	Unmodified	_LYGAVKHG_					0	0	0			REV__nc|ENSG00000174514|Q8N468-2|MFSD4A	REV__nc|ENSG00000174514|Q8N468-2|MFSD4A	MULTI-MSMS	OvCa99_classI_Rep5	1	422.73828125	2	422.73742	843.460287	2.5012	0.0010573	-0.052704	-2.228E-05	2.4485	0.0010351	422.7372841652777	86.894	1.955	86.894	86.553	88.508	0					111	46	4	0	0	0	0.72922	1	9260	9260		37.028	5.0736	1	13090000	+		37116	21839	30609	30635	40513	40513					0.03229550417142946
LYGEERALAV	10	Unmodified	_LYGEERALAV_					0	0	0		tr|A0A553SM50|A0A553SM50_NIACIBifunctionalaldolase/short-chaindehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_21905PE=3SV=1	tr|A0A553SM50|A0A553SM50_NIACIBifunctionalaldolase/short-chaindehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_21905PE=3SV=1	tr|A0A553SM50|A0A553SM50_NIACIBifunctionalaldolase/short-chaindehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_21905PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.80419921875	2	560.803488	1119.59242	1.6271	0.00091251	-1.4809	-0.00083048	0.14627	8.2027E-05	560.802565252688	113.47	2.0685	112.03	111.61	113.67	-1.4461					95	40	3	0	0	0	0.65434	1	10551	10551		35.618	3.6634	1	624400			37117	33802	30610	30636	40514	40514					0.03741110643431966
LYGGQLIIFV	10	Unmodified	_LYGGQLIIFV_					0	0	0			REV__tr|A0A7D6VSF8|A0A7D6VSF8_9CLOTPhosphatasePAP2familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16170PE=4SV=1	REV__tr|A0A7D6VSF8|A0A7D6VSF8_9CLOTPhosphatasePAP2familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16170PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.79541015625	2	561.831517	1121.64848	2.7209	0.0015287	-4.2026	-0.0023612	-1.4817	-0.00083248	561.8288716391655	116.45	0.45504	116.45	116.19	116.64	0					19	9	3	0	0	0	0.026752	1	13304	13304		35.618	11.099	1	150180	+		37118	31497	30611	30637	40515	40515					0.09252363550899645
LYGHLLPSH	9	Unmodified	_LYGHLLPSH_					0	0	0		ENST00000361113.9_1_19:11729024-11729201:+|nuORF	ENST00000361113.9_1_19:11729024-11729201:+|nuORF	ENST00000361113.9_1_19:11729024-11729201:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	518.7833251953125	2	518.782359	1035.55016	1.4093	0.00073114	0.55623	0.00028856	1.9656	0.0010197	518.7824673728311	112.58	1.0395	112.58	112.3	113.33	0					53	22	4	0	0	0	0.19716	1	12828	12828		76.847	0.072494	1	1873300			37119	10784	30612	30638	40516	40516					0.03381180025712638
LYGHLLPSH	9	Unmodified	_LYGHLLPSH_					0	0	0		ENST00000361113.9_1_19:11729024-11729201:+|nuORF	ENST00000361113.9_1_19:11729024-11729201:+|nuORF	ENST00000361113.9_1_19:11729024-11729201:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	518.7835083007812	2	518.782359	1035.55016	1.3363	0.00069324	0.95773	0.00049685	2.294	0.0011901	518.782650056395	134.92	1.3195	134.92	134.65	135.97	0					62	28	3	0	0	0	0.27546	1	15715	15715		65.803	5.5092	1	898280			37120	10784	30612	30638	40517	40517					0.03381180025712638
LYGIYMNQ	8	Unmodified	_LYGIYMNQ_					0	0	0		PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant;ENSG00000205038|ENST00000378402|PKHD1L1	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	501.2338562011719	2	501.241678	1000.4688	1.526	0.00076488	-3.5047	-0.0017567	-1.9788	-0.00099183	501.239766993136	127.28	0.71227	127.28	127.05	127.76	0					24	15	2	0	0	0	0.69415	1	14738	14738		44.531	2.0566	1	162530			37121	9047	30613	30639	40518	40518					-0.03141263728548438
LYGKIAEAF	9	Unmodified	_LYGKIAEAF_					0	0	0		ENSG00000123159|ENST00000393033|GIPC1;ENST00000587811.1_1_19:14593203-14593794:-|nuORF	ENSG00000123159|ENST00000393033|GIPC1	ENSG00000123159|ENST00000393033|GIPC1	MULTI-MSMS	OvCa99_classI_Rep5	1	506.28070068359375	2	506.279118	1010.54368	1.8904	0.00095706	0.022251	1.1265E-05	1.9126	0.00096832	506.2791020888196	92.575	1.4979	92.575	92.301	93.799	0					84	35	3	0	0	0	0.022645	2	10030	10001;10030		143.89	64.174	1	10427000			37122	3579	30614	30640	40519;40520	40520					0.038832420743119656
LYGKIIHL	8	Unmodified	_LYGKIIHL_					0	0	0		ENSG00000168802|ENST00000448552|CHTF8	ENSG00000168802|ENST00000448552|CHTF8	ENSG00000168802|ENST00000448552|CHTF8	MSMS	OvCa99_classI_Rep5	1	478.8007507324219	2	478.80002	955.585488	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.384	1	95.384	94.884	95.884	0								0	0	0	0.30129	1	10412	10412		71.378	8.3995	1				37123	6943	30615	30641	40521	40521					0.10591842553515107
LYGKKAILF	9	Unmodified	_LYGKKAILF_					0	0	0		ENSG00000185926|ENST00000328188|OR4C46	ENSG00000185926|ENST00000328188|OR4C46	ENSG00000185926|ENST00000328188|OR4C46	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.7822265625	2	526.828778	1051.643	1.9427	0.0010235	-3.2292	-0.0017012	-1.2864	-0.00067774	526.8272659808628	85.922	0.40074	85.922	85.791	86.192	0					11	9	2	0	0	0	0.027462	1	9047	9047		40.573	12.318	1	166270			37124	8301	30616	30642	40522	40522					0.11924684759060256
LYGKVQEL	8	Unmodified	_LYGKVQEL_					0	0	0			REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	REV__nc|ENSG00000163817|Q9NP91-2|SLC6A20	MULTI-MSMS	OvCa99_classI_Rep5	1	475.2728576660156	2	475.271293	948.528032	-0.3785	-0.00017989	-0.2036	-9.6767E-05	-0.58211	-0.00027666	475.271039683434	67.849	0.87685	67.849	67.604	68.481	0					60	21	4	0	0	0	0.35821	1	6361	6361		96.19	0	1	6470700	+		37125	20896	30617	30643	40523	40523					0.05170955557275647
LYGLDKGMP	9	Unmodified	_LYGLDKGMP_					0	0	0			REV__tr|A0A553SPE4|A0A553SPE4_NIACIPhoHfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_26130PE=4SV=1	REV__tr|A0A553SPE4|A0A553SPE4_NIACIPhoHfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_26130PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.2865295410156	2	497.257328	992.500103	0.57071	0.00028379	-2.5009	-0.0012436	-1.9302	-0.00095979	497.25589862571263	81.38	0.53157	81.38	81.162	81.694	0					27	12	3	0	0	0	0.027433	1	8418	8418		60.972	8.6728	1	1014900	+		37126	30529	30618	30644	40524	40524					0.0035530930554159568
LYGLLIESR	9	Unmodified	_LYGLLIESR_					0	0	0			REV__ENST00000483458.1_1_9:131831674-131832729:+|nuORF	REV__ENST00000483458.1_1_9:131831674-131832729:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	532.810791015625	2	532.310949	1062.60735	1.8817	0.0010017	0.72436	0.00038559	2.6061	0.0013872	532.3128712590462	117.35	1.4402	117.35	116.95	118.39	0					82	30	5	0	0	0	0.30002	1	13414	13414		62.978	9.627	1	1350500	+		37127	20104	30619	30645	40525	40525					0.0785460251142922
LYGNNRVFLK	10	Unmodified	_LYGNNRVFLK_					0	0	0		ENST00000437184.5_1_2:33683166-33740095:+|nuORF;ENST00000425210.5_1_2:33718199-33740095:+|nuORF;ENST00000402538.7_1_2:33672919-33740095:+|nuORF	ENST00000437184.5_1_2:33683166-33740095:+|nuORF	ENST00000437184.5_1_2:33683166-33740095:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.5487976074219	3	408.568024	1222.68224	0.61757	0.00025232	4.3393	0.0017729	4.9569	0.0020252	408.56939317847474	40.27	0.2796	40.27	40.106	40.386	0					6	5	2	0	0	0	0.027001	1	2442	2442		11.097	0	1	43871			37128	11430	30620	30646	40526	40526					0.07980785042650496
LYGRHFNYL	9	Unmodified	_LYGRHFNYL_					0	0	0		ENST00000562717.1_1_16:50188117-50258568:+|nuORF;nc|ENSG00000121274|Q8NDF8-4|TENT4B;nc|ENSG00000121274|Q8NDF8-2|TENT4B;nc|ENSG00000121274|Q8NDF8|TENT4B;nc|ENSG00000121274|Q8NDF8-3|TENT4B;nc|ENSG00000121274|Q8NDF8-5|TENT4B;ENSG00000121274|ENST00000561678|TENT4B	ENST00000562717.1_1_16:50188117-50258568:+|nuORF	ENST00000562717.1_1_16:50188117-50258568:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	591.80810546875	2	591.806365	1181.59818	2.2546	0.0013343	-0.31787	-0.00018812	1.9367	0.0011462	591.806166484099	74.94	1.2864	74.94	74.478	75.764	0					67	31	4	0	0	0	0.071436	2	7428	7428;7457		106.42	5.8611	1	6921100			37129	3475	30621	30647	40527;40528	40527					0.014642539457554449
LYGSIAKPAV	10	Unmodified	_LYGSIAKPAV_					0	0	0			REV__ENST00000441083.1_1_1:104469718-104469820:+|nuORF	REV__ENST00000441083.1_1_1:104469718-104469820:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.7836608886719	2	509.800217	1017.58588	-0.23926	-0.00012198	-0.062409	-3.1816E-05	-0.30167	-0.00015379	510.3022703728933	67.623	0.15681	67.623	67.566	67.723	0					5	3	2	0	0	0	0.026849	1	6331	6331		40.778	3.6191	1	73449	+		37130	25840	30622	30648	40529	40529					0.07779217482709555
LYHAEIDAL	9	Unmodified	_LYHAEIDAL_					0	0	0		ENST00000471302.2_1_1:231047214-231057243:-|nuORF;nc|ENSG00000143643|Q8NBP0-2|TTC13;ENSG00000143643|ENST00000366661|TTC13	ENST00000471302.2_1_1:231047214-231057243:-|nuORF	ENST00000471302.2_1_1:231047214-231057243:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8017578125	2	522.771657	1043.52876	1.6942	0.00088566	-0.72162	-0.00037724	0.97255	0.00050842	522.7711506761586	100.3	0.50273	100.3	100.11	100.61	0					18	11	2	0	0	0	0.027426	1	11117	11117		63.306	1.1989	1	202690			37131	5083	30623	30649	40530	40530					0.008737502063240754
LYHALSEKL	9	Unmodified	_LYHALSEKL_					0	0	0		ENST00000460833.1_1_3:64670856-64785255:+|nuORF	ENST00000460833.1_1_3:64670856-64785255:+|nuORF	ENST00000460833.1_1_3:64670856-64785255:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3450317382812	2	537.303124	1072.5917	0.015324	8.2336E-06	-4.0446	-0.0021732	-4.0293	-0.0021649	537.300844410194	46.768	0.66328	46.768	46.501	47.165	0					30	14	3	0	0	0	0.027462	1	3298	3298		38.806	15.283	1	573830			37132	12159	30624	30650	40531	40531					0.058303159943761784
LYHFCLEN	8	Unmodified	_LYHFCLEN_					0	0	0			REV__ENST00000323523.8_1_3:100287745-100295774:+|nuORF	REV__ENST00000323523.8_1_3:100287745-100295774:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	519.7413940429688	2	519.739302	1037.46405	-0.57085	-0.00029669	3.4081	0.0017713	2.8372	0.0014746	519.7410200103027	56.542	1.518	56.542	56.3	57.818	0					105	35	6	0	0	0	0.64377	1	4753	4753		54.765	5.3231	1	18125000	+		37133	24466	30625	30651	40532	40532					-0.05318147871321344
LYHKCAKV	8	Unmodified	_LYHKCAKV_					0	0	0			REV__ENSG00000168795|ENST00000307750|ZBTB5	REV__ENSG00000168795|ENST00000307750|ZBTB5	MULTI-SECPEP	OvCa9_classI_Rep2	2	480.2919921875	2	481.26803	960.521507	1.3606	0.00065483	-3.074	-0.0014794	-1.7134	-0.00082459	481.26615103029496	90.517	0.54539	89.214	89.077	89.622	-1.302					16	10	2	0	0	0	0.028476	1	8017	8017		37.028	15.069	1	16210	+		37134	21405	30626	30652	40533	40533					0.03966739124916785
LYHKVTLL	8	Unmodified	_LYHKVTLL_					0	0	0			REV__nc|ENSG00000196730|P53355-4|DAPK1	REV__nc|ENSG00000196730|P53355-4|DAPK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.76953125	2	493.805303	985.596052	1.903	0.00093971	-0.058689	-2.8981E-05	1.8443	0.00091073	493.8040358953041	100.14	0.54834	100.14	99.939	100.49	0					18	12	3	0	0	0	0.028476	1	11119	11119		25.45	0	1	283350	+		37135	22860	30627	30653	40534	40534					0.10267825207949954
LYHLLCRSFLT	11	Carbamidomethyl (C)	_LYHLLC(Carbamidomethyl (C))RSFLT_	LYHLLC(1)RSFLT		LYHLLC(59)RSFLT		0	1	0		L1MA1_dup882|chr3:174894625-174897831:+|1.387705056550523|0.3345806313734131|2.05|429.0|110|1|anti-sense	L1MA1_dup882|chr3:174894625-174897831:+|1.387705056550523|0.3345806313734131|2.05|429.0|110|1|anti-sense	L1MA1_dup882|chr3:174894625-174897831:+|1.387705056550523|0.3345806313734131|2.05|429.0|110|1|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	474.9246826171875	3	474.92359	1421.74894	0.021073	1.0008E-05	1.4736	0.00069984	1.4947	0.00070985	474.92420350889455	46.993	0.96181	46.993	46.719	47.681	0					65	21	5	0	0	0	0.43443	1	3373	3373		58.63	13.99	1	1830800			37136	14569	30628	30654	40535	40535	166				0.05493652542236305
LYHLPPLNPL	10	Unmodified	_LYHLPPLNPL_					0	0	0			REV__ENSG00000163512|ENST00000479665|AZI2	REV__ENSG00000163512|ENST00000479665|AZI2	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.76611328125	2	588.842416	1175.67028	1.9548	0.0011511	-0.43531	-0.00025633	1.5195	0.00089472	588.8423317797163	133.92	0.5724	133.92	133.67	134.24	0					17	11	2	0	0	0	0.026697	1	15596	15596		29.15	0	1	65010	+		37137	20844	30629	30655	40536	40536					0.08947168299459918
LYHMGKAVD	9	Oxidation (M)	_LYHM(Oxidation (M))GKAVD_		LYHM(1)GKAVD		LYHM(50)GKAVD	0	0	1			REV__nc|ENSG00000091436|Q9NYL2-2|MAP3K20	REV__nc|ENSG00000091436|Q9NYL2-2|MAP3K20	MULTI-MSMS	OvCa99_classI_Rep5	1	525.2577514648438	2	525.257859	1048.50117	0.087742	4.6087E-05	2.598	0.0013646	2.6858	0.0014107	525.2589998699935	101.55	0.63492	101.55	101.27	101.91	0					36	14	3	0	0	0	0.42057	1	11323	11323		50.025	7.5501	1	1170500	+		37138	28757	30630	30656	40537	40537		632			-0.021144763255506405
LYHNCLRCL	9	Unmodified	_LYHNCLRCL_					0	0	0		LRCH4|p.K594Lfs*7|1|0.06|ENSG00000077454|chr7:100575779-100575780|-/CAGCAGCAGCAGCAGGACAG|frameshift_variant;ENSG00000077454|ENST00000310300|LRCH4;ENST00000485583.1_1_7:100179936-100183723:-|nuORF;LRCH4|p.L331Qfs*14|1|0.46|ENSG00000077454|chr7:100577838-100577869|GCGTTCTCTGGGTCCCCGGGGCTCCCGGGCCA/-|frameshift_variant	LRCH4|p.K594Lfs*7|1|0.06|ENSG00000077454|chr7:100575779-100575780|-/CAGCAGCAGCAGCAGGACAG|frameshift_variant	LRCH4|p.K594Lfs*7|1|0.06|ENSG00000077454|chr7:100575779-100575780|-/CAGCAGCAGCAGCAGGACAG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.326416015625	2	567.780979	1133.5474	1.9164	0.0010881	0.53063	0.00030128	2.447	0.0013894	567.7811302525618	112.04	1.7858	112.04	111.79	113.57	0					50	40	2	0	0	0	0.027425	1	12839	12839		60.294	14.322	1	221370			37139	1573	30631	30657	40538	40538					-0.01402734695102481
LYHPAEIK	8	Unmodified	_LYHPAEIK_					0	0	0			REV__tr|A0A7D6ZZ09|A0A7D6ZZ09_9CLOTNitroreductasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04110PE=3SV=1	REV__tr|A0A7D6ZZ09|A0A7D6ZZ09_9CLOTNitroreductasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04110PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.84368896484375	2	485.77146	969.528367	0.70821	0.00034403	-0.90818	-0.00044117	-0.19998	-9.7144E-05	485.77119819676614	67.039	0.44135	67.039	66.857	67.298	0					17	10	2	0	0	0	0.028476	1	6236	6236		60.294	0	1	246240	+		37140	32394	30632	30658	40539	40539					0.0423837527713431
LYHPAEIK	8	Unmodified	_LYHPAEIK_					0	0	0			REV__tr|A0A7D6ZZ09|A0A7D6ZZ09_9CLOTNitroreductasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04110PE=3SV=1	REV__tr|A0A7D6ZZ09|A0A7D6ZZ09_9CLOTNitroreductasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04110PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	485.77146	969.528367	-0.70587	-0.00034289	-3.5414	-0.0017203	-4.2473	-0.0020632	485.7694611456121	70.503	0.81636	67.022	66.787	67.603	-3.4812	-0.008273	-0.00074856	NaN	60.294	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76973	+		37141	32394	30632	30658							0.0423837527713431
LYHPIGGNRS	10	Unmodified	_LYHPIGGNRS_					0	0	0			REV__nc|ENSG00000074054|Q7Z460-2|CLASP1	REV__nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-MSMS	OvCa99_classI_Rep5	1	557.2926635742188	2	557.293622	1112.57269	-0.92927	-0.00051787	-4.3911	-0.0024471	-5.3204	-0.002965	557.2910130504365	103.69	0.76396	103.69	103.39	104.15	0					40	17	3	0	0	0	0.46756	1	11587	11587		58.782	9.3404	1	1384100	+		37142	16946	30633	30659	40540	40540					0.020907794233380628
LYHSKKRRRRR	11	Unmodified	_LYHSKKRRRRR_					0	0	0			REV__ENST00000488854.6_1_3:113082116-113098301:-|nuORF	REV__ENST00000488854.6_1_3:113082116-113098301:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.8063354492188	3	519.322069	1554.94438	-1.1375	-0.00059074	-0.34113	-0.00017716	-1.4787	-0.0007679	519.3216797766906	40.889	0.36373	37.935	37.685	38.049	-2.9541					10	6	2	0	0	0	0.026497	1	1784	1784		9.6461	3.6451	1	14375	+		37143	26628	30634	30660	40541	40541					0.18910423901957074
LYHSSNTTR	9	Unmodified	_LYHSSNTTR_					0	0	0		chr3:119190319-119191009|284|13.45|0.84|4.01|+|2|UPK1B,None|1	chr3:119190319-119191009|284|13.45|0.84|4.01|+|2|UPK1B,None|1	chr3:119190319-119191009|284|13.45|0.84|4.01|+|2|UPK1B,None|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.830322265625	2	539.767437	1077.52032	2.4905	0.0013443	3.4797	0.0018782	5.9702	0.0032225	539.7694283082865	80.421	0.42516	80.421	80.234	80.659	0					14	9	2	0	0	0	0.027462	1	8236	8236		36.447	2.9312	1	410550			37144	467	30635	30661	40542	40542					-0.01533803710299253
LYHTIGSAM	9	Unmodified	_LYHTIGSAM_					0	0	0		tr|A0A7D6W3R4|A0A7D6W3R4_9CLOTDMTfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_11115PE=3SV=1	tr|A0A7D6W3R4|A0A7D6W3R4_9CLOTDMTfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_11115PE=3SV=1	tr|A0A7D6W3R4|A0A7D6W3R4_9CLOTDMTfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_11115PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	496.75115966796875	2	496.747127	991.479702	-0.82577	-0.0004102	2.8114	0.0013965	1.9856	0.00098634	496.7483526840232	39.948	0.44899	39.948	39.798	40.247	0					21	9	3	0	0	0	0.34496	1	2402	2402		57.811	5.5121	1	755180			37145	35458	30636	30662	40543	40543					-0.01637861354265624
LYHVGQKKLQ	10	Unmodified	_LYHVGQKKLQ_					0	0	0			REV__tr|A0A553SFF9|A0A553SFF9_NIACIDecarboxylating6-phosphogluconatedehydrogenaseOS=NialliacirculansOX=1397GN=gndPE=3SV=1	REV__tr|A0A553SFF9|A0A553SFF9_NIACIDecarboxylating6-phosphogluconatedehydrogenaseOS=NialliacirculansOX=1397GN=gndPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	405.2386169433594	3	405.239907	1212.69789	1.178	0.00047739	-4.4282	-0.0017945	-3.2502	-0.0013171	405.2380980368008	45.582	1.7446	42.872	42.448	44.192	-2.7097					104	34	5	0	0	0	0.52439	1	2661	2661		51.193	1.6567	1	1021000	+		37146	29574	30637	30663	40544	40544					0.10005071559726275
LYHVGQKKLQ	10	Unmodified	_LYHVGQKKLQ_					0	0	0			REV__tr|A0A553SFF9|A0A553SFF9_NIACIDecarboxylating6-phosphogluconatedehydrogenaseOS=NialliacirculansOX=1397GN=gndPE=3SV=1	REV__tr|A0A553SFF9|A0A553SFF9_NIACIDecarboxylating6-phosphogluconatedehydrogenaseOS=NialliacirculansOX=1397GN=gndPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	607.3543701171875	2	607.356222	1212.69789	-0.61353	-0.00037263	-2.9113	-0.0017682	-3.5248	-0.0021408	607.3543577015784	45.588	1.5455	42.878	42.497	44.043	-2.7097					76	30	4	0	0	0	0.64697	1	2694	2694		11.511	0	1	376690	+		37147	29574	30637	30663	40545	40545					0.10005071559726275
LYHVGQKKLQ	10	Unmodified	_LYHVGQKKLQ_					0	0	0			REV__tr|A0A553SFF9|A0A553SFF9_NIACIDecarboxylating6-phosphogluconatedehydrogenaseOS=NialliacirculansOX=1397GN=gndPE=3SV=1	REV__tr|A0A553SFF9|A0A553SFF9_NIACIDecarboxylating6-phosphogluconatedehydrogenaseOS=NialliacirculansOX=1397GN=gndPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	405.23828125	3	405.239907	1212.69789	0.69282	0.00028076	-4.3164	-0.0017492	-3.6236	-0.0014684	405.23816410818705	45.869	1.9179	42.797	42.405	44.323	-3.0717					124	36	5	0	0	0	0.42082	1	2365	2365		65.465	10.381	1	2187400	+		37148	29574	30637	30663	40546	40546					0.10005071559726275
LYHVGQKKLQ	10	Unmodified	_LYHVGQKKLQ_					0	0	0			REV__tr|A0A553SFF9|A0A553SFF9_NIACIDecarboxylating6-phosphogluconatedehydrogenaseOS=NialliacirculansOX=1397GN=gndPE=3SV=1	REV__tr|A0A553SFF9|A0A553SFF9_NIACIDecarboxylating6-phosphogluconatedehydrogenaseOS=NialliacirculansOX=1397GN=gndPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	607.3558349609375	2	607.356222	1212.69789	-0.31245	-0.00018977	-3.3365	-0.0020264	-3.6489	-0.0022162	607.3541822162564	45.888	1.7639	42.815	42.457	44.221	-3.0724					89	33	4	0	0	0	0.34811	1	2383	2383		35.618	6.4687	1	952630	+		37149	29574	30637	30663	40547	40547					0.10005071559726275
LYHVLDASLV	10	Unmodified	_LYHVLDASLV_					0	0	0			REV__ENSG00000176022|ENST00000379198|B3GALT6	REV__ENSG00000176022|ENST00000379198|B3GALT6	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.35302734375	2	565.316232	1128.61791	1.5307	0.00086533	3.3527	0.0018953	4.8834	0.0027607	565.318155943116	144.89	1.1795	144.89	144.6	145.78	0					54	24	3	0	0	0	0.026915	1	17015	17015		27.882	0	1	136880	+		37150	21927	30638	30664	40548	40548					0.05874585165838653
LYIDRPLPYL	10	Unmodified	_LYIDRPLPYL_					0	0	0		nc|ENSG00000172661|Q9Y4E1-5|WASHC2C;nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000172661|ENST00000623400|WASHC2C;ENSG00000099290|ENST00000282633|WASHC2A	nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	MULTI-MSMS	OvCa99_classI_Rep5	1	631.8631591796875	2	631.860806	1261.70706	1.7099	0.0010804	-0.014565	-9.2029E-06	1.6954	0.0010712	631.8608487471839	124.78	0.78203	124.78	124.42	125.2	0					39	17	4	0	0	0	0.12738	2	14399	14399;14422		106.68	16.082	1	1099200			37151	1966	30639	30665	40549;40550	40549					0.08667420125379977
LYIELYLL	8	Unmodified	_LYIELYLL_					0	0	0		ENST00000354611.8_1_2:200803759-200813092:-|nuORF	ENST00000354611.8_1_2:200803759-200813092:-|nuORF	ENST00000354611.8_1_2:200803759-200813092:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	520.3052368164062	2	520.307344	1038.60013	-4.8818	-0.0025401	0.8014	0.00041698	-4.0804	-0.0021231	520.3076056055337	152.59	1.7718	151.62	150.74	152.51	-0.97301					83	35	4	0	0	0	0.7043	1	13051	13051		42.474	10.52	1	460690			37152	10664	30640	30666	40551	40551					0.08237869910999507
LYIEQGKV	8	Unmodified	_LYIEQGKV_					0	0	0		tr|A0A7D7A4Q3|A0A7D7A4Q3_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04090PE=4SV=1	tr|A0A7D7A4Q3|A0A7D7A4Q3_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04090PE=4SV=1	tr|A0A7D7A4Q3|A0A7D7A4Q3_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04090PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	475.2732849121094	2	475.271293	948.528032	-0.3785	-0.00017989	-0.2036	-9.6767E-05	-0.58211	-0.00027666	475.271039683434	67.849	0.87685	67.849	67.604	68.481	0					60	21	4	0	0	0	0.59148	1	6389	6389		65.803	0	1	6470700			37153	36151	30641	30667	40552	40552					0.05170955557287016
LYIETLKTL	9	Unmodified	_LYIETLKTL_					0	0	0			REV__ENST00000452973.6_1_6:142540853-142541078:+|nuORF	REV__ENST00000452973.6_1_6:142540853-142541078:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	547.3276977539062	2	547.328808	1092.64306	-0.5311	-0.00029069	-2.78	-0.0015216	-3.3111	-0.0018123	547.3271242122657	63.586	2.4189	63.586	62.253	64.672	0					181	59	4	0	0	0	0.21231	1	5680	5680		74.255	7.8258	1	4975300	+		37154	25988	30642	30668	40553	40553					0.10044639968418778
LYIFHRLYK	9	Unmodified	_LYIFHRLYK_					0	0	0		ENSG00000189433|ENST00000339480|GJB4	ENSG00000189433|ENST00000339480|GJB4	ENSG00000189433|ENST00000339480|GJB4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	417.5754089355469	3	418.244881	1251.71281	0.46038	0.00019255	-2.2526	-0.00094213	-1.7922	-0.00074958	418.24389264465	37.708	0.9469	34.816	34.293	35.239	-2.8925					26	18	2	0	0	0	0.027462	1	1408	1408		20.947	0	1	25487			37155	8557	30643	30669	40554	40554					0.09702563427686073
LYIFVIGVGL	10	Unmodified	_LYIFVIGVGL_					0	0	0		ENSG00000177464|ENST00000323040|GPR4	ENSG00000177464|ENST00000323040|GPR4	ENSG00000177464|ENST00000323040|GPR4	MULTI-MSMS	OvCa99_classI_Rep5	1	547.3375244140625	2	547.336436	1092.65832	0.91195	0.00049914	1.4691	0.00080411	2.3811	0.0013032	547.3372538282765	142.77	0.49402	142.77	142.44	142.93	0					17	9	2	0	0	0	0.5794	1	16677	16677		44.531	2.0566	1	82267			37156	7684	30644	30670	40555	40555					0.11569551556272017
LYIFYVGGVF	10	Unmodified	_LYIFYVGGVF_					0	0	0			REV__tr|A0A553SGY9|A0A553SGY9_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_11795PE=3SV=1	REV__tr|A0A553SGY9|A0A553SGY9_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_11795PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	589.3208618164062	2	589.318243	1176.62193	1.8814	0.0011087	-0.84716	-0.00049925	1.0342	0.00060949	589.3178770977415	128.86	4.0908	128.86	128.47	132.56	0					266	86	6	0	0	0	0.4178	1	15180	15180		65.897	9.1764	1	48468000	+		37157	29753	30645	30671	40556	40556					0.04068674659561111
LYIIHPEGF	9	Unmodified	_LYIIHPEGF_					0	0	0		ANGPTL5|p.S175F|1|0.29|ENSG00000187151|chr11:101902637-101902637|G/A|missense_variant	ANGPTL5|p.S175F|1|0.29|ENSG00000187151|chr11:101902637-101902637|G/A|missense_variant	ANGPTL5|p.S175F|1|0.29|ENSG00000187151|chr11:101902637-101902637|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7970581054688	2	544.792392	1087.57023	-0.20426	-0.00011128	-2.9861	-0.0016268	-3.1903	-0.0017381	544.7904734020146	69.393	0.56665	69.393	69.145	69.712	0					31	13	4	0	0	0	0.027462	1	6571	6571		24.203	0	1	2294000			37158	91	30646	30672	40557	40557					0.0299493096565584
LYIIRALLEG	10	Unmodified	_LYIIRALLEG_					0	0	0			REV__ENST00000343060.4_1_7:27133701-27134016:-|nuORF	REV__ENST00000343060.4_1_7:27133701-27134016:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.8053588867188	2	580.855524	1159.69649	2.2338	0.0012975	2.9146	0.001693	5.1484	0.0029905	580.8572386756035	94.321	0.3808	94.321	94.094	94.475	0					12	8	2	0	0	0	0.026659	1	10255	10255		45.972	20.522	1	102090	+		37159	24664	30647	30673	40558	40558					0.12303437470950485
LYIKNKNTI	9	Unmodified	_LYIKNKNTI_					0	0	0			REV__tr|A0A7D6ZRP0|A0A7D6ZRP0_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04455PE=4SV=1	REV__tr|A0A7D6ZRP0|A0A7D6ZRP0_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04455PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	553.835693359375	2	553.832049	1105.64954	2.2854	0.0012657	-0.89826	-0.00049749	1.3871	0.00076824	553.8314111077262	75.005	1.0452	75.005	74.478	75.523	0					81	25	4	0	0	0	0.16562	1	7451	7451		82.241	2.5279	1	4048400	+		37160	32162	30648	30674	40559	40559					0.10094577919812764
LYIKNKNTI	9	Unmodified	_LYIKNKNTI_					0	0	0			REV__tr|A0A7D6ZRP0|A0A7D6ZRP0_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04455PE=4SV=1	REV__tr|A0A7D6ZRP0|A0A7D6ZRP0_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04455PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8306884765625	2	553.832049	1105.64954	-0.12008	-6.6502E-05	-3.596	-0.0019916	-3.7161	-0.0020581	553.8299276335473	138.55	4.0786	138.32	136.16	140.24	-0.22696					182	83	3	0	0	0	0.61208	1	13884	13884		30.504	6.3009	1	64451	+		37161	32162	30648	30674	40560	40560					0.10094577919812764
LYILAEYPP	9	Unmodified	_LYILAEYPP_					0	0	0		ENSG00000153446|ENST00000472572|C16orf89	ENSG00000153446|ENST00000472572|C16orf89	ENSG00000153446|ENST00000472572|C16orf89	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.2908935546875	2	539.794601	1077.57465	-0.3332	-0.00017986	-4.1457	-0.0022378	-4.4789	-0.0024177	539.7923897903365	85.238	1.441	83.017	82.696	84.137	-2.2204					48	28	2	0	0	0	0.027462	1	5126	5126		33.516	0.022601	1	473410			37162	5682	30649	30675	40561	40561					0.03896395388551355
LYILGAVAL	9	Unmodified	_LYILGAVAL_					0	0	0			REV__ENSG00000151012|ENST00000280612|SLC7A11	REV__ENSG00000151012|ENST00000280612|SLC7A11	MULTI-MSMS	OvCa9_classI_Rep2	2	466.7943420410156	2	466.794404	931.574254	0.16431	7.67E-05	-0.27024	-0.00012615	-0.10593	-4.9446E-05	466.7941140608781	113.74	1.5796	113.63	113.37	114.95	-0.11777					73	31	3	0	0	0	0.32242	1	10799	10799		60.404	8.1045	1	211490	+		37163	20211	30650	30676	40562	40562					0.10573020459366944
LYILGAVAL	9	Unmodified	_LYILGAVAL_					0	0	0			REV__ENSG00000151012|ENST00000280612|SLC7A11	REV__ENSG00000151012|ENST00000280612|SLC7A11	MULTI-MSMS	OvCa9_classI_Rep3	3	466.7946472167969	2	466.794404	931.574254	-0.11357	-5.3013E-05	0.08487	3.9617E-05	-0.028699	-1.3397E-05	466.7942385092766	114.69	1.6288	113.63	113.3	114.93	-1.055					72	32	3	0	0	0	0.42921	1	8504	8504		49.211	3.2588	1	225500	+		37164	20211	30650	30676	40563	40563					0.10573020459366944
LYILGAVAL	9	Unmodified	_LYILGAVAL_					0	0	0			REV__ENSG00000151012|ENST00000280612|SLC7A11	REV__ENSG00000151012|ENST00000280612|SLC7A11	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.7942810058594	2	466.794404	931.574254	0.4922	0.00022975	-0.75227	-0.00035116	-0.26008	-0.0001214	466.7939124327931	115	1.6641	113.6	113.15	114.81	-1.3977					75	32	4	0	0	0	0.32242	1	10733	10733		60.404	0	1	247140	+		37165	20211	30650	30676	40564	40564					0.10573020459366944
LYILLIPLFFY	11	Unmodified	_LYILLIPLFFY_					0	0	0		tr|A0A553SKM7|A0A553SKM7_NIACIDNAinternalization-relatedcompetenceproteinComEC/Rec2OS=NialliacirculansOX=1397GN=CEQ21_18895PE=4SV=1	tr|A0A553SKM7|A0A553SKM7_NIACIDNAinternalization-relatedcompetenceproteinComEC/Rec2OS=NialliacirculansOX=1397GN=CEQ21_18895PE=4SV=1	tr|A0A553SKM7|A0A553SKM7_NIACIDNAinternalization-relatedcompetenceproteinComEC/Rec2OS=NialliacirculansOX=1397GN=CEQ21_18895PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.2826232910156	3	472.284342	1413.8312	-5.3969	-0.0025489	4.3718	0.0020647	-1.0251	-0.00048414	472.28668669654706	159.46	3.529	157.88	156.69	160.22	-1.5858					186	88	4	0	0	0	0.72538	1	15698	15698		10.587	0.94066	1	120390			37166	33634	30651	30677	40565	40565					0.14083497892829655
LYILPLLI	8	Unmodified	_LYILPLLI_					0	0	0		nc|ENSG00000123901|Q9NYM4-2|GPR83;ENSG00000123901|ENST00000243673|GPR83	nc|ENSG00000123901|Q9NYM4-2|GPR83	nc|ENSG00000123901|Q9NYM4-2|GPR83	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.2895202636719	2	479.322797	956.631041	-0.4726	-0.00022653	-3.8895	-0.0018643	-4.3621	-0.0020908	479.3206403224496	91.83	0.70968	89.288	89.061	89.771	-2.5425					19	13	2	0	0	0	0.028476	1	7968	7968		43.626	19.107	1	23249			37167	3616	30652	30678	40566	40566					0.15099068015899775
LYILYLDIF	9	Unmodified	_LYILYLDIF_					0	0	0			REV__tr|A0A7D7ADV5|A0A7D7ADV5_9CLOTTIGR03943familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00460PE=4SV=1	REV__tr|A0A7D7ADV5|A0A7D7ADV5_9CLOTTIGR03943familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00460PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	586.8330688476562	2	586.833726	1171.6529	1.556	0.00091309	-2.0541	-0.0012054	-0.49813	-0.00029232	586.8325381417309	126.75	1.2122	126.75	126.37	127.58	0					80	26	4	0	0	0	0.34496	1	14641	14641		57.811	0	1	7053200	+		37168	32699	30653	30679	40567	40567					0.07393827973805855
LYINEHTIQ	9	Unmodified	_LYINEHTIQ_					0	0	0			REV__ENST00000561659.5_1_16:57508703-57509771:-|nuORF	REV__ENST00000561659.5_1_16:57508703-57509771:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	565.799560546875	2	565.795663	1129.57677	2.1412	0.0012115	3.8335	0.002169	5.9747	0.0033805	565.7977946005308	118.39	1.4025	118.39	118.06	119.47	0					77	29	5	0	0	0	0.074342	1	13584	13584		104.75	3.1458	1	3450800	+		37169	16335	30654	30680	40568	40568					0.01716824126378924
LYINIAQVP	9	Unmodified	_LYINIAQVP_					0	0	0		ENST00000467077.1_1_3:142074209-142075845:-|nuORF	ENST00000467077.1_1_3:142074209-142075845:-|nuORF	ENST00000467077.1_1_3:142074209-142075845:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7800903320312	2	515.800217	1029.58588	1.9983	0.0010307	-0.69013	-0.00035597	1.3082	0.00067477	515.7994659411507	86.014	0.44007	86.014	85.791	86.231	0					28	10	3	0	0	0	0.027462	1	9053	9053		47.916	12.764	1	2714400			37170	12302	30655	30681	40569	40569					0.07227217482704873
LYINIAQVP	9	Unmodified	_LYINIAQVP_					0	0	0		ENST00000467077.1_1_3:142074209-142075845:-|nuORF	ENST00000467077.1_1_3:142074209-142075845:-|nuORF	ENST00000467077.1_1_3:142074209-142075845:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.800217	1029.58588	1.4353	0.00074031	-2.3195	-0.0011964	-0.88423	-0.00045608	515.7988922609553	87.46	1.3305	86.029	85.692	87.022	-1.4311	0.019545	-0.0012334	NaN	47.916	63	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250270			37171	12302	30655	30681							0.07227217482704873
LYIPLWVLL	9	Unmodified	_LYIPLWVLL_					0	0	0			REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|344|3|anti-sense	REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|344|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	565.3543701171875	2	565.354628	1128.6947	1.546	0.00087404	-3.1945	-0.001806	-1.6485	-0.00093196	565.3527711373636	144.35	3.6923	144.35	143.76	147.45	0					246	75	7	0	0	0	0.32242	2	16844	16844;17105		60.404	9.2109	1	6070400	+		37172	28552	30656	30682	40570;40571	40570					0.13550428453004315
LYIQQSIIN	9	Unmodified	_LYIQQSIIN_					0	0	0			REV__tr|A0A7D6ZVW2|A0A7D6ZVW2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15380PE=4SV=1	REV__tr|A0A7D6ZVW2|A0A7D6ZVW2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15380PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	546.7811279296875	2	546.308406	1090.60226	0.63886	0.00034902	-1.3135	-0.00071759	-0.67467	-0.00036858	546.3081516131124	131.22	0.64668	130.99	130.65	131.3	-0.22696					20	12	3	0	0	0	0.027462	1	12889	12889		29.15	3.0862	1	20555	+		37173	32264	30657	30683	40572	40572					0.06058298648804339
LYIQQSIIN	9	Unmodified	_LYIQQSIIN_					0	0	0			REV__tr|A0A7D6ZVW2|A0A7D6ZVW2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15380PE=4SV=1	REV__tr|A0A7D6ZVW2|A0A7D6ZVW2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15380PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	546.308406	1090.60226	-0.33598	-0.00018355	0.11973	6.5409E-05	-0.21625	-0.00011814	546.308544243969	131.89	0.49823	130.76	130.54	131.04	-1.1249	-0.046501	0.0021637	NaN	34.173	18	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22797	+		37174	32264	30657	30683							0.06058298648804339
LYIQTDHLFF	10	Unmodified	_LYIQTDHLFF_					0	0	0		ADAM10|p.C344*|1|0.17|ENSG00000137845|chr15:58633331-58633341|ACTTTTTTCAC/-|frameshift_variant;ENSG00000137845|ENST00000260408|ADAM10;ENST00000396136.6_1_15:58889748-58968450:-|nuORF	ADAM10|p.C344*|1|0.17|ENSG00000137845|chr15:58633331-58633341|ACTTTTTTCAC/-|frameshift_variant	ADAM10|p.C344*|1|0.17|ENSG00000137845|chr15:58633331-58633341|ACTTTTTTCAC/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	648.83740234375	2	648.834788	1295.65502	2.0869	0.0013541	0.87813	0.00056976	2.965	0.0019238	648.8352373387412	134.34	1.0259	134.34	133.63	134.65	0					39	21	3	0	0	0	0.3094	1	15628	15628		79.713	31.753	1	742030			37175	27	30658	30684	40573	40573					0.019022567116053324
LYIRFQSR	8	Unmodified	_LYIRFQSR_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	OvCa99_classI_Rep5	1	541.8109741210938	2	541.808908	1081.60326	0.5072	0.00027481	1.0247	0.00055518	1.5319	0.00082998	541.8085871406515	72.324	0.81793	72.324	71.792	72.61	0					41	19	4	0	0	0	0.64026	1	7034	7034		55.504	2.1528	1	1463500			37176	2951	30659	30685	40574	40574					0.06572557808362944
LYIRNGILE	9	Unmodified	_LYIRNGILE_					0	0	0			REV__tr|A0A7D6VZF4|A0A7D6VZF4_9CLOTUDP-N-acetylglucosamine1-carboxyvinyltransferaseOS=ClostridiumintestinaleOX=36845GN=murAPE=3SV=1	REV__tr|A0A7D6VZF4|A0A7D6VZF4_9CLOTUDP-N-acetylglucosamine1-carboxyvinyltransferaseOS=ClostridiumintestinaleOX=36845GN=murAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.7545166015625	2	545.816399	1089.61824	-0.69132	-0.00037733	-1.87	-0.0010207	-2.5613	-0.001398	545.8152693213891	103.56	0.63628	103.56	103.34	103.98	0					21	14	3	0	0	0	0.027433	1	11586	11586		60.972	2.19	1	614620	+		37177	31837	30660	30686	40575	40575					0.07702004885732094
LYISEAEGLKF	11	Unmodified	_LYISEAEGLKF_					0	0	0		ENSG00000137642|ENST00000260197|SORL1;ENST00000532451.1_1_11:121323091-121416136:+|nuORF;SORL1-SC5DL|1|fusion;SORL1-TECTA|1|fusion	ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	MULTI-MSMS	OvCa99_classI_Rep5	1	635.3499145507812	2	635.339904	1268.66525	3.1366	0.0019928	-0.43769	-0.00027808	2.699	0.0017148	635.339644179024	115.97	0.83167	115.97	115.58	116.42	0					43	17	4	0	0	0	0.079434	1	13263	13263		101.46	35.994	1	930610			37178	4603	30661	30687	40576	40576					0.04166819646161457
LYISFKVKG	9	Unmodified	_LYISFKVKG_					0	0	0			REV__ENSG00000023839|ENST00000647814|ABCC2	REV__ENSG00000023839|ENST00000647814|ABCC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.8174438476562	2	527.81841	1053.62227	2.908	0.0015349	-3.3438	-0.0017649	-0.43577	-0.00023001	527.8164130855859	133.06	2.3118	131.53	131.12	133.43	-1.5238					88	45	3	0	0	0	0.50149	1	12871	12871		42.396	10.441	1	542020	+		37179	16561	30662	30688	40577	40577					0.09760094379430484
LYISKGGEIE	10	Unmodified	_LYISKGGEIE_					0	0	0			REV__tr|A0A7D6VPA1|A0A7D6VPA1_9CLOTCobalaminB12-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17935PE=4SV=1	REV__tr|A0A7D6VPA1|A0A7D6VPA1_9CLOTCobalaminB12-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17935PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.322021484375	2	554.797872	1107.58119	2.9242	0.0016224	-0.60304	-0.00033456	2.3212	0.0012878	554.7973036568264	115.87	0.97729	115.87	115.3	116.28	0					33	16	3	0	0	0	0.026548	1	13208	13208		72.879	25.222	1	886600	+		37180	31237	30663	30689	40578	40578					0.0317028854929049
LYISKGGEIE	10	Unmodified	_LYISKGGEIE_					0	0	0			REV__tr|A0A7D6VPA1|A0A7D6VPA1_9CLOTCobalaminB12-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17935PE=4SV=1	REV__tr|A0A7D6VPA1|A0A7D6VPA1_9CLOTCobalaminB12-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17935PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	554.797872	1107.58119	-0.15413	-8.5511E-05	-0.58093	-0.0003223	-0.73506	-0.00040781	554.7973673095601	116.19	2.0801	116.07	115.69	117.77	-0.11777	0.061473	-0.00026919	NaN	72.879	81	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193750	+		37181	31237	30663	30689							0.0317028854929049
LYITFGIG	8	Unmodified	_LYITFGIG_					0	0	0		tr|A0A553SR30|A0A553SR30_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_00300PE=4SV=1	tr|A0A553SR30|A0A553SR30_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_00300PE=4SV=1	tr|A0A553SR30|A0A553SR30_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_00300PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	442.2514953613281	2	442.249829	882.485105	1.831	0.00080976	0.39617	0.00017521	2.2272	0.00098496	442.2498688875309	151.82	1.0378	151.82	151.45	152.49	0					34	21	2	0	0	0	0.64377	1	17779	17779		54.765	0	1	119930			37182	34225	30664	30690	40579	40579					0.039161854998724266
LYITLPLALLF	11	Unmodified	_LYITLPLALLF_					0	0	0		ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	ENSG00000143418|ENST00000368954|CERS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	425.7486572265625	3	426.268692	1275.78425	-0.24546	-0.00010463	-3.1857	-0.001358	-3.4311	-0.0014626	426.2672184607175	38.56	0.39655	38.56	38.44	38.836	0					11	8	2	0	0	0	0.026158	1	2230	2230		20.837	0	1	68747			37183	5053	30665	30691	40580	40580					0.15738638341690603
LYITTRLR	8	Unmodified	_LYITTRLR_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.3009643554688	2	518.319109	1034.62366	-0.45627	-0.00023649	-1.5802	-0.00081903	-2.0364	-0.0010555	518.3181072062963	43.122	0.21331	43.122	43.014	43.227	0					6	4	2	0	0	0	0.028476	1	2812	2812		82.305	0	1	81143			37184	5956	30666	30692	40581	40581					0.10773728468166155
LYITWGKSLY	10	Unmodified	_LYITWGKSLY_					0	0	0			REV__tr|A0A553STJ6|A0A553STJ6_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04990PE=4SV=1	REV__tr|A0A553STJ6|A0A553STJ6_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04990PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	622.3413696289062	2	622.339707	1242.66486	1.7001	0.001058	-3.8673	-0.0024068	-2.1673	-0.0013488	622.3371564258559	117.68	0.97666	117.68	116.95	117.93	0					36	20	3	0	0	0	0.45822	1	13491	13491		60.118	7.0293	1	240250	+		37185	30974	30667	30693	40582	40582					0.053234447170098065
LYIVEPLKF	9	Unmodified	_LYIVEPLKF_					0	0	0		ENSG00000094975|ENST00000263688|SUCO;nc|ENSG00000094975|Q9UBS9-2|SUCO	ENSG00000094975|ENST00000263688|SUCO	ENSG00000094975|ENST00000263688|SUCO	MULTI-MSMS	OvCa99_classI_Rep5	1	561.3353881835938	2	561.333893	1120.65323	2.5076	0.0014076	-0.72647	-0.00040779	1.7811	0.00099981	561.3333392600139	128.56	1.826	128.56	128.23	130.06	0					108	38	5	0	0	0	0.035142	4	14902	14881;14902;14926;14939		131.03	46.116	1	4045200			37186	1917	30668	30694	40583;40584;40585;40586	40584					0.09773247693647136
LYIVHPTMF	9	Unmodified	_LYIVHPTMF_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	560.7979125976562	2	560.79662	1119.57869	3.3551	0.0018815	-1.2497	-0.00070081	2.1054	0.0011807	560.7958548971386	115.89	2.3017	115.89	115.49	117.79	0					99	49	4	0	0	0	0.0096355	4	13261	13228;13237;13261;13288		170.31	60.536	1	7362800			37187	7526	30669	30695	40587;40588;40589;40590	40589					0.02368161610615971
LYIVKDTVWP	10	Unmodified	_LYIVKDTVWP_					0	0	0			REV__ENST00000373851.6_1_9:123874787-123912836:+|nuORF	REV__ENST00000373851.6_1_9:123874787-123912836:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	617.3451538085938	2	617.347532	1232.68051	-1.5268	-0.00094257	-2.1071	-0.0013008	-3.634	-0.0022434	617.3461300850123	107.21	1.7582	105.34	104.85	106.61	-1.8785					116	34	5	0	0	0	0.53885	1	9760	9760		49.442	2.2139	1	955110	+		37188	25051	30670	30696	40591	40591					0.07347731234017374
LYIWHKIRLT	10	Unmodified	_LYIWHKIRLT_					0	0	0		ENST00000450295.5_3_9:91992741-91993038:-|nuORF	ENST00000450295.5_3_9:91992741-91993038:-|nuORF	ENST00000450295.5_3_9:91992741-91993038:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	447.7613220214844	3	448.271319	1341.79213	2.9129	0.0013058	1.2649	0.00056701	4.1778	0.0018728	448.27191179890974	41.047	0.54186	38.337	38.093	38.635	-2.7097					22	10	3	0	0	0	0.027193	1	2133	2133		22.58	6.0498	1	41278			37189	12037	30671	30697	40592	40592					0.13490210381814904
LYIYALPR	8	Unmodified	_LYIYALPR_					0	0	0		ENSG00000174914|ENST00000642097|OR9G1	ENSG00000174914|ENST00000642097|OR9G1	ENSG00000174914|ENST00000642097|OR9G1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	504.7781677246094	2	504.797478	1007.5804	-0.35231	-0.00017785	-3.3094	-0.0016706	-3.6617	-0.0018484	504.79529170892147	57.371	0.61163	54.026	53.883	54.495	-3.3449					16	11	2	0	0	0	0.028476	1	3772	3772		65.897	0	1	33275			37190	7499	30672	30698	40593	40593					0.07691538690903599
LYKAIETRL	9	Unmodified	_LYKAIETRL_					0	0	0			REV__tr|A0A553SUM3|A0A553SUM3_NIACIPLP-dependentaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01355PE=3SV=1	REV__tr|A0A553SUM3|A0A553SUM3_NIACIPLP-dependentaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01355PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8297729492188	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.38529	1	11720	11720		53.351	0	1	308210	+		37191	31096	30673	30699	40594	40594					0.10094577919812764
LYKDLQRF	8	Unmodified	_LYKDLQRF_					0	0	0			REV__tr|A0A553SIN3|A0A553SIN3_NIACIPolysaccharidepyruvyltransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15180PE=4SV=1	REV__tr|A0A553SIN3|A0A553SIN3_NIACIPolysaccharidepyruvyltransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15180PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.8050537109375	2	541.803291	1081.59203	-1.3029	-0.00070592	3.6077	0.0019546	2.3048	0.0012487	541.8052691155432	80.327	1.6539	77.616	76.791	78.445	-2.7106					68	33	5	0	0	0	0.6962	1	6556	6556		44.117	0	1	758010	+		37192	29911	30674	30700	40595	40595					0.054497357142281544
LYKELGEYF	9	Unmodified	_LYKELGEYF_					0	0	0		ENSG00000131504|ENST00000389054|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;nc|ENSG00000131504|O60610-2|DIAPH1	ENSG00000131504|ENST00000389054|DIAPH1	ENSG00000131504|ENST00000389054|DIAPH1	MSMS	OvCa99_classI_Rep5	1	581.2963256835938	2	581.294965	1160.57538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.69	1	106.69	106.19	107.19	0								0	0	0	0.0070379	1	12014	12014		143.89	61.646	1				37193	4073	30675	30701	40596	40596					0.001511900376272024
LYKELGEYF	9	Unmodified	_LYKELGEYF_					0	0	0		ENSG00000131504|ENST00000389054|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;nc|ENSG00000131504|O60610-2|DIAPH1	ENSG00000131504|ENST00000389054|DIAPH1	ENSG00000131504|ENST00000389054|DIAPH1	MSMS	OvCa99_classI_Rep5	1	581.2963256835938	2	581.294965	1160.57538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.85	1	106.85	106.35	107.35	0								0	0	0	2.2419E-05	1	12036	12036		171.53	91.819	1				37194	4073	30675	30701	40597	40597					0.001511900376272024
LYKFSADEF	9	Unmodified	_LYKFSADEF_					0	0	0		PIGT-ZBTB8OS|1|fusion;ENST00000473294.6_1_1:33098913-33099651:-|nuORF;ENST00000483138.5_1_1:33093465-33116130:-|nuORF;nc|ENSG00000176261|Q8IWT0-2|ZBTB8OS;ENSG00000176261|ENST00000468695|ZBTB8OS	PIGT-ZBTB8OS|1|fusion	PIGT-ZBTB8OS|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.3301391601562	2	560.27149	1118.52843	3.0445	0.0017057	-0.98456	-0.00055162	2.0599	0.0011541	560.2709614798247	99.479	0.45745	99.479	99.195	99.652	0					17	10	2	0	0	0	0.027403	1	10997	10997		69.628	8.6557	1	1160400			37195	15500	30676	30702	40598	40598					-0.02609669513526569
LYKGEWLNK	9	Unmodified	_LYKGEWLNK_					0	0	0		CYTH2|p.G105W|1|0.38|ENSG00000105443|chr19:48472403-48472403|G/T|missense_variant	CYTH2|p.G105W|1|0.38|ENSG00000105443|chr19:48472403-48472403|G/T|missense_variant	CYTH2|p.G105W|1|0.38|ENSG00000105443|chr19:48472403-48472403|G/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	575.8146362304688	2	575.816399	1149.61824	1.841	0.0010601	1.0155	0.00058477	2.8565	0.0016448	575.8169394976684	95.403	1.0507	95.403	95.075	96.126	0					55	24	4	0	0	0	0.13482	1	10427	10427		87.754	0	1	1832700			37196	705	30677	30703	40599	40599					0.04942004885697315
LYKIHLLML	9	Oxidation (M)	_LYKIHLLM(Oxidation (M))L_		LYKIHLLM(1)L		LYKIHLLM(63)L	0	0	1			REV__ENSG00000204310|ENST00000375107|AGPAT1	REV__ENSG00000204310|ENST00000375107|AGPAT1	MULTI-MSMS	OvCa99_classI_Rep5	1	580.35302734375	2	580.34902	1158.68349	1.6224	0.00094158	4.051	0.002351	5.6734	0.0032926	580.3513283449385	82.081	0.6673	82.081	81.854	82.522	0					29	15	3	0	0	0	0.30002	1	8498	8498		62.978	9.627	1	767200	+		37197	23141	30678	30704	40600	40600		542			0.11049283087186268
LYKIHLLML	9	Oxidation (M)	_LYKIHLLM(Oxidation (M))L_					0	0	1			REV__ENSG00000204310|ENST00000375107|AGPAT1	REV__ENSG00000204310|ENST00000375107|AGPAT1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	580.34902	1158.68349	-1.0724	-0.00062238	-2.8479	-0.0016528	-3.9203	-0.0022752	580.3473116562091	83.892	0.67303	82.345	82.072	82.745	-1.5462	0.13206	-0.003963	NaN	62.978	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31440	+		37198	23141	30678	30704				542			0.11049283087186268
LYKKTQETL	9	Unmodified	_LYKKTQETL_					0	0	0		ENSG00000101150|ENST00000346249|TPD52L2;nc|ENSG00000101150|O43399-5|TPD52L2;nc|ENSG00000101150|O43399-7|TPD52L2;DNAJC5-TPD52L2|5|fusion;DNAJC5-TPD52L2|1|fusion;DNAJC5-TPD52L2|7|fusion;DNAJC5-TPD52L2|3|fusion;DNAJC5-TPD52L2|9|fusion	ENSG00000101150|ENST00000346249|TPD52L2	ENSG00000101150|ENST00000346249|TPD52L2	MULTI-MSMS	OvCa99_classI_Rep5	1	562.3209228515625	2	562.321514	1122.62847	-0.16573	-9.3191E-05	-0.46592	-0.000262	-0.63165	-0.00035519	562.3211348277994	39.948	0.81612	39.948	39.756	40.573	0					49	17	4	0	0	0	0.2422	1	2389	2389		69.628	8.6557	1	2213200			37199	755	30679	30705	40601	40601					0.07206567820298915
LYKLMPELPQ	10	Unmodified	_LYKLMPELPQ_					0	0	0		nc|ENSG00000198862|O94822-3|LTN1;ENSG00000198862|ENST00000361371|LTN1	nc|ENSG00000198862|O94822-3|LTN1	nc|ENSG00000198862|O94822-3|LTN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.2220153808594	3	411.23002	1230.66823	1.1209	0.00046093	1.9698	0.00081004	3.0907	0.001271	411.2317207437613	70.643	0.15691	70.643	70.565	70.722	0					5	3	2	0	0	0	0.026674	1	6781	6781		47.96	36.505	1	83894			37200	15262	30680	30706	40602	40602					0.06212371499350411
LYKLNRLHR	9	Unmodified	_LYKLNRLHR_					0	0	0			REV__ENSG00000125375|ENST00000557421|DMAC2L	REV__ENSG00000125375|ENST00000557421|DMAC2L	MULTI-MSMS	OvCa99_classI_Rep5	1	404.9158630371094	3	404.915646	1211.72511	1.3398	0.00054253	-1.7272	-0.00069936	-0.38732	-0.00015683	404.91501495046697	32.56	2.0482	32.56	32.303	34.351	0					115	41	5	0	0	0	0.44568	1	1420	1420		47.657	9.8458	1	5436000	+		37201	18720	30681	30707	40603	40603					0.12771599890743346
LYKLNRLHR	9	Unmodified	_LYKLNRLHR_					0	0	0			REV__ENSG00000125375|ENST00000557421|DMAC2L	REV__ENSG00000125375|ENST00000557421|DMAC2L	MULTI-MSMS	OvCa99_classI_Rep5	1	606.8696899414062	2	606.869831	1211.72511	0.26624	0.00016157	-0.73566	-0.00044645	-0.46942	-0.00028487	606.8694065666427	32.577	1.1801	32.577	32.353	33.533	0					62	23	4	0	0	0	0.22621	1	1421	1421		45.952	0	1	1906000	+		37202	18720	30681	30707	40604	40604					0.12771599890743346
LYKMLSENF	9	Unmodified	_LYKMLSENF_					0	0	0		ENSG00000186141|ENST00000334163|POLR3C;ENST00000489436.1_1_1:145595040-145598553:-|nuORF	ENSG00000186141|ENST00000334163|POLR3C	ENSG00000186141|ENST00000334163|POLR3C	MULTI-MSMS	OvCa99_classI_Rep5	1	572.79052734375	2	572.788992	1143.56343	2.6829	0.0015367	-0.028051	-1.6067E-05	2.6548	0.0015206	572.7890022428747	99.213	0.69093	99.213	98.838	99.529	0					31	16	3	0	0	0	0.051592	1	10964	10964		117.81	38.098	1	1421500			37203	8315	30682	30708	40605	40605					-0.0026074997722389526
LYKMNRLYL	9	Unmodified	_LYKMNRLYL_					0	0	0		ENST00000570002.2_1_17:44344573-44344858:+|nuORF;nc|nan|Q2M2W7-2|C17orf58;ENSG00000186665|ENST00000580729|C17orf58	ENST00000570002.2_1_17:44344573-44344858:+|nuORF	ENST00000570002.2_1_17:44344573-44344858:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	606.8696899414062	2	607.341726	1212.6689	0.26815	0.00016286	2.4998	0.0015182	2.7679	0.0016811	607.3431052181678	32.402	0.249	32.402	32.254	32.503	0					7	4	2	0	0	0	0.027453	1	1421	1421		30.504	0	1	22608			37204	8355	30683	30709	40606	40606					0.07107210939079778
LYKNKQVQF	9	Unmodified	_LYKNKQVQF_					0	0	0		tr|A0A7D7A092|A0A7D7A092_9CLOTLCPfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09060PE=3SV=1	tr|A0A7D7A092|A0A7D7A092_9CLOTLCPfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09060PE=3SV=1	tr|A0A7D7A092|A0A7D7A092_9CLOTLCPfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09060PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	584.3328247070312	2	584.329673	1166.64479	0.95886	0.00056029	4.3231	0.0025261	5.282	0.0030864	584.3322260709449	145.35	1.4348	145.35	144.74	146.18	0					64	29	4	0	0	0	0.52083	1	17001	17001		40.573	5.4206	1	382200			37205	35990	30684	30710	40607	40607					0.06813693777030494
LYKPKQEVKF	10	Unmodified	_LYKPKQEVKF_					0	0	0		nc|ENSG00000156535|Q6YHK3-4|CD109;ENSG00000156535|ENST00000287097|CD109;nc|ENSG00000156535|Q6YHK3-3|CD109	nc|ENSG00000156535|Q6YHK3-4|CD109	nc|ENSG00000156535|Q6YHK3-4|CD109	MULTI-MSMS	OvCa99_classI_Rep5	1	427.253173828125	3	427.251813	1278.73361	-0.26622	-0.00011374	0.22145	9.4617E-05	-0.044764	-1.9126E-05	427.2518287005263	54.782	0.72765	54.782	54.505	55.233	0					52	16	5	0	0	0	0.13632	2	4436	4436;4459		104.42	40.729	1	3754600			37206	5848	30685	30711	40608;40609	40608					0.10539109016690418
LYKQKAEIK	9	Unmodified	_LYKQKAEIK_					0	0	0			REV__tr|A0A553SGD4|A0A553SGD4_NIACIFlagellarmotorproteinMotAOS=NialliacirculansOX=1397GN=motAPE=3SV=1	REV__tr|A0A553SGD4|A0A553SGD4_NIACIFlagellarmotorproteinMotAOS=NialliacirculansOX=1397GN=motAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	560.8411254882812	2	560.839874	1119.66519	2.9672	0.0016641	-1.471	-0.000825	1.4962	0.00083911	560.8389410118077	80.258	1.304	80.258	79.944	81.248	0					74	30	5	0	0	0	0.13482	1	8220	8220		87.754	0.057861	1	7275900	+		37207	29688	30686	30712	40610	40610					0.11014864436833705
LYKQRQQLQ	9	Unmodified	_LYKQRQQLQ_					0	0	0			REV__ENSG00000066185|ENST00000372565|ZMYND12	REV__ENSG00000066185|ENST00000372565|ZMYND12	MULTI-MSMS	OvCa99_classI_Rep5	1	402.23138427734375	3	402.231412	1203.67241	1.4458	0.00058156	-1.6185	-0.00065102	-0.17268	-6.9459E-05	402.2307908221868	32.868	1.0296	32.868	32.651	33.681	0					60	20	4	0	0	0	0.094616	1	1458	1458		98.629	5.4861	1	4982100	+		37208	16810	30687	30713	40611	40611					0.07871597037296851
LYKSIRTHV	9	Unmodified	_LYKSIRTHV_					0	0	0			REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|333|2|anti-sense	REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|333|2|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	558.8294677734375	2	558.82984	1115.64513	-0.1228	-6.8627E-05	-0.373	-0.00020845	-0.49581	-0.00027707	558.8295260279332	44.506	1.0715	44.506	44.26	45.332	0					62	23	4	0	0	0	0.44294	1	3005	3005		47.916	0	1	3136500	+		37209	28210	30688	30714	40612	40612					0.09193113496894512
LYKSIVKSI	9	Unmodified	_LYKSIVKSI_					0	0	0			REV__tr|A0A553SMV5|A0A553SMV5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23315PE=4SV=1	REV__tr|A0A553SMV5|A0A553SMV5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23315PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.29296875	2	525.831517	1049.64848	-0.14838	-7.8023E-05	-2.7649	-0.0014539	-2.9133	-0.0015319	525.8298971316876	40.333	0.93838	37.623	37.352	38.29	-2.7097					33	18	3	0	0	0	0.027462	1	2017	2017		24.519	9.6543	1	63029	+		37210	30373	30689	30715	40613	40613					0.12564363550905
LYKSKTLSM	9	Oxidation (M)	_LYKSKTLSM(Oxidation (M))_		LYKSKTLSM(1)		LYKSKTLSM(110)	0	0	1		tr|A0A7D6VRQ5|A0A7D6VRQ5_9CLOTTypeVIIsecretionproteinEssCOS=ClostridiumintestinaleOX=36845GN=essCPE=4SV=1	tr|A0A7D6VRQ5|A0A7D6VRQ5_9CLOTTypeVIIsecretionproteinEssCOS=ClostridiumintestinaleOX=36845GN=essCPE=4SV=1	tr|A0A7D6VRQ5|A0A7D6VRQ5_9CLOTTypeVIIsecretionproteinEssCOS=ClostridiumintestinaleOX=36845GN=essCPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	543.796630859375	2	543.796817	1085.57908	2.3122	0.0012574	-3.6571	-0.0019887	-1.3449	-0.00073134	543.7948441854605	93.97	1.1367	93.97	93.468	94.604	0					47	26	3	0	0	0	0.059253	1	10210	10210		113.41	14.782	1	3669900			37211	34948	30690	30716	40614	40614		769			0.03971536539825138
LYKSRGSS	8	Unmodified	_LYKSRGSS_					0	0	0			REV__nc|ENSG00000038382|O75962-2|TRIO	REV__nc|ENSG00000038382|O75962-2|TRIO	MULTI-MSMS	OvCa99_classI_Rep5	1	449.2454833984375	2	449.243067	896.47158	2.8935	0.0012999	3.9791	0.0017876	6.8725	0.0030874	449.2446784121074	95.932	0.75992	95.932	95.699	96.459	0					42	17	4	0	0	0	0.57878	1	10506	10506		68.485	8.1907	1	1360100	+		37212	16618	30691	30717	40615	40615					0.01920327720631576
LYKSRGSS	8	Unmodified	_LYKSRGSS_					0	0	0			REV__nc|ENSG00000038382|O75962-2|TRIO	REV__nc|ENSG00000038382|O75962-2|TRIO	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	449.243067	896.47158	2.8935	0.0012999	3.9791	0.0017876	6.8725	0.0030874	449.2446784121074	95.932	0.75992	95.932	95.699	96.459	0	0	0	NaN	68.485	42	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1360100	+		37213	16618	30691	30717							0.01920327720631576
LYKTAGGLIY	10	Unmodified	_LYKTAGGLIY_					0	0	0		ENSG00000116031|ENST00000410009|CD207	ENSG00000116031|ENST00000410009|CD207	ENSG00000116031|ENST00000410009|CD207	MULTI-MSMS	OvCa9_classI_Rep2	2	549.812255859375	2	549.813325	1097.6121	1.0707	0.00058869	-2.5432	-0.0013983	-1.4724	-0.00080957	549.8118594915368	65.959	2.5762	63.264	62.872	65.448	-2.6958					98	51	2	0	0	0	0.13504	2	5086	5086;5093		104.75	14.247	1	960460			37214	3151	30692	30718	40616;40617	40616					0.06719486654196771
LYKVKNLNI	9	Unmodified	_LYKVKNLNI_					0	0	0			REV__tr|A0A7D7A2M6|A0A7D7A2M6_9CLOTCehA/McbAfamilymetallohydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09170PE=4SV=1	REV__tr|A0A7D7A2M6|A0A7D7A2M6_9CLOTCehA/McbAfamilymetallohydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09170PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.302001953125	2	552.842416	1103.67028	-0.43911	-0.00024276	-1.3301	-0.00073533	-1.7692	-0.00097809	552.8419848541105	101.67	0.59441	100.91	100.62	101.21	-0.76401					16	11	2	0	0	0	0.027462	1	9329	9329		38.806	20.482	1	19526	+		37215	32546	30693	30719	40618	40618					0.12259168299465273
LYKYFVSF	8	Unmodified	_LYKYFVSF_					0	0	0		tr|A0A7D6VRY9|A0A7D6VRY9_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13950PE=4SV=1	tr|A0A7D6VRY9|A0A7D6VRY9_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13950PE=4SV=1	tr|A0A7D6VRY9|A0A7D6VRY9_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13950PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.7734985351562	2	533.784036	1065.55352	2.0042	0.0010698	-3.4492	-0.0018411	-1.445	-0.0007713	533.7820024766571	96.941	0.72813	96.941	96.71	97.438	0					26	15	3	0	0	0	0.028476	1	10699	10699		33.516	19.74	1	680970			37216	34967	30694	30720	40619	40619					0.02336430079708407
LYKYFVSF	8	Unmodified	_LYKYFVSF_					0	0	0		tr|A0A7D6VRY9|A0A7D6VRY9_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13950PE=4SV=1	tr|A0A7D6VRY9|A0A7D6VRY9_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13950PE=4SV=1	tr|A0A7D6VRY9|A0A7D6VRY9_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13950PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	533.784036	1065.55352	-1.1577	-0.00061795	-4.423	-0.0023609	-5.5807	-0.0029789	533.7815918312173	97.906	0.63299	96.967	96.779	97.412	-0.93938	0.030334	-0.00025341	NaN	33.516	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19551			37217	34967	30694	30720							0.02336430079708407
LYKYFVSF	8	Unmodified	_LYKYFVSF_					0	0	0		tr|A0A7D6VRY9|A0A7D6VRY9_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13950PE=4SV=1	tr|A0A7D6VRY9|A0A7D6VRY9_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13950PE=4SV=1	tr|A0A7D6VRY9|A0A7D6VRY9_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13950PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	533.784036	1065.55352	-1.4247	-0.0007605	-4.7345	-0.0025272	-6.1592	-0.0032877	534.2831340473418	99.226	0.46809	96.901	96.692	97.16	-2.3253	-0.03504	-0.00058596	NaN	33.516	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34959			37218	34967	30694	30720							0.02336430079708407
LYLAGTTQ	8	Unmodified	_LYLAGTTQ_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	433.74896240234375	2	433.734543	865.454533	0.52499	0.00022771	-0.81541	-0.00035367	-0.29042	-0.00012597	433.73379583310106	73.604	0.39647	73.604	73.359	73.755	0					13	9	2	0	0	0	0.028476	1	7228	7228		55.504	14.932	1	227320	+		37219	21178	30695	30721	40620	40620					0.0164240711480943
LYLAREEYF	9	Unmodified	_LYLAREEYF_					0	0	0			REV__ENSG00000188559|ENST00000202677|RALGAPA2	REV__ENSG00000188559|ENST00000202677|RALGAPA2	MULTI-MSMS	OvCa99_classI_Rep5	1	602.3072509765625	2	602.305864	1202.59717	2.0687	0.001246	0.31486	0.00018964	2.3835	0.0014356	602.3058413502723	113.7	0.95193	113.7	113.47	114.42	0					39	21	3	0	0	0	0.3076	1	12975	12975		62.107	7.3311	1	2256000	+		37220	22718	30696	30722	40621	40621					0.0039799478618078865
LYLASLRSM	9	Unmodified	_LYLASLRSM_					0	0	0		ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295	ENSG00000166004|ENST00000325212|CEP295	ENSG00000166004|ENST00000325212|CEP295	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.3133544921875	2	527.291702	1052.56885	1.4991	0.00079045	1.6607	0.00087565	3.1597	0.0016661	527.2924235143817	125.22	0.26527	125.22	125.07	125.33	0					8	6	2	0	0	0	0.027462	1	14464	14464		14.865	0.20078	1	51630			37221	6628	30697	30723	40622	40622					0.044669736052583175
LYLASLRSM	9	Unmodified	_LYLASLRSM_					0	0	0		ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295	ENSG00000166004|ENST00000325212|CEP295	ENSG00000166004|ENST00000325212|CEP295	MULTI-MATCH	OvCa9_classI_Rep2	2		2	527.291702	1052.56885	0.25648	0.00013524	-2.7914	-0.0014719	-2.535	-0.0013367	527.2898456702474	125.6	0.79263	125.36	125.11	125.9	-0.2359	0.049696	-0.00025303	NaN	14.865	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39204			37222	6628	30697	30723							0.044669736052583175
LYLASLRSM	9	Unmodified	_LYLASLRSM_					0	0	0		ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295	ENSG00000166004|ENST00000325212|CEP295	ENSG00000166004|ENST00000325212|CEP295	MULTI-MATCH	OvCa9_classI_Rep3	3		2	527.291702	1052.56885	0.86096	0.00045398	-3.7142	-0.0019585	-2.8533	-0.0015045	527.7912930047478	126.43	0.99773	125.36	124.97	125.97	-1.0715	0.047042	-0.0012262	NaN	14.865	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37035			37223	6628	30697	30723							0.044669736052583175
LYLATLATNV	10	Unmodified	_LYLATLATNV_					0	0	0			REV__nc|ENSG00000167984|Q7RTR2-4|NLRC3	REV__nc|ENSG00000167984|Q7RTR2-4|NLRC3	MULTI-SECPEP	OvCa9_classI_Rep2	2	539.31884765625	2	539.810782	1077.60701	-1.277	-0.00068933	1.4988	0.00080907	0.22183	0.00011975	539.8110943263631	98.998	1.1452	98.105	97.658	98.803	-0.89305					54	22	4	0	0	0	0.026734	1	9067	9067		31.53	0	1	118880	+		37224	21329	30698	30724	40623	40623					0.07131182791590618
LYLCLLLVTL	10	Unmodified	_LYLCLLLVTL_					0	0	0			REV__nc|ENSG00000142185|O94759-2|TRPM2	REV__nc|ENSG00000142185|O94759-2|TRPM2	MULTI-MSMS	OvCa9_classI_Rep4_	4	582.35986328125	2	582.359053	1162.70355	-1.3483	-0.00078517	4.3342	0.0025241	2.986	0.0017389	582.3615197468338	117.53	2.2585	116.19	115.42	117.68	-1.3444					117	42	5	0	0	0	0.68695	1	11037	11037		31.955	1.386	1	861700	+		37225	19772	30699	30725	40624	40624					0.12871034027170936
LYLDEAHSI	9	Unmodified	_LYLDEAHSI_					0	0	0		ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	ENSG00000100596|ENST00000216484|SPTLC2	MULTI-MSMS	OvCa99_classI_Rep5	1	530.7705688476562	2	530.769114	1059.52368	2.5453	0.001351	0.32666	0.00017338	2.872	0.0015244	530.769110988329	88.814	1.0896	88.814	88.426	89.516	0					52	26	3	0	0	0	0.019428	1	9455	9455		147.69	0	1	4039600			37226	2088	30700	30726	40625	40625					-0.0037055365628475556
LYLDGITATT	10	Unmodified	_LYLDGITATT_					0	0	0		tr|A0A7D6VQH0|A0A7D6VQH0_9CLOTDihydroxy-aciddehydrataseOS=ClostridiumintestinaleOX=36845GN=ilvDPE=3SV=1	tr|A0A7D6VQH0|A0A7D6VQH0_9CLOTDihydroxy-aciddehydrataseOS=ClostridiumintestinaleOX=36845GN=ilvDPE=3SV=1	tr|A0A7D6VQH0|A0A7D6VQH0_9CLOTDihydroxy-aciddehydrataseOS=ClostridiumintestinaleOX=36845GN=ilvDPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	534.289794921875	2	534.284597	1066.55464	0.41899	0.00022386	-1.7417	-0.00093057	-1.3227	-0.00070671	534.2835572767831	162.37	1.3408	162.37	161.31	162.65	0					45	28	2	0	0	0	0.59703	1	19046	19046		42.396	11.892	1	60831			37227	34848	30701	30727	40626	40626					0.02402599657943938
LYLEMLLK	8	Oxidation (M)	_LYLEM(Oxidation (M))LLK_		LYLEM(1)LLK		LYLEM(100)LLK	0	0	1		sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1;sp|F5HC79|TRM1_HCMVMTripartiteterminasesubunit1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=TRM1PE=3SV=1	sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1	sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	519.7991943359375	2	519.798829	1037.5831	-0.59881	-0.00031126	-2.3557	-0.0012245	-2.9545	-0.0015358	519.7975456252907	68.67	1.4422	68.67	68.356	69.798	0					90	34	4	0	0	0	0.32444	1	6508	6508		102.77	8.7669	1	15850000			37228	32855	30702	30728	40627	40627		723			0.06581626033539578
LYLEPQGTLF	10	Unmodified	_LYLEPQGTLF_					0	0	0		nc|ENSG00000065243|Q16513-5|PKN2;nc|ENSG00000065243|Q16513-4|PKN2;nc|ENSG00000065243|Q16513-2|PKN2;ENSG00000065243|ENST00000370521|PKN2	nc|ENSG00000065243|Q16513-5|PKN2	nc|ENSG00000065243|Q16513-5|PKN2	MSMS	OvCa99_classI_Rep5	1	590.8253173828125	2	590.816064	1179.61758	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.59	1	142.59	142.09	143.09	0								0	0	0	0.12201	1	16660	16660		60.118	5.3419	1				37229	1318	30703	30729	40628	40628					0.034951654459973724
LYLERLNMN	9	Unmodified	_LYLERLNMN_					0	0	0			REV__ENST00000422370.2_1_19:45645388-45645871:+|nuORF	REV__ENST00000422370.2_1_19:45645388-45645871:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	583.3049926757812	2	583.305341	1164.59613	2.8228	0.0016466	-3.344	-0.0019506	-0.5212	-0.00030402	583.303252858239	88.023	0.71298	88.023	87.671	88.384	0					46	16	4	0	0	0	0.31747	1	9343	9343		60.972	7.6205	1	2333800	+		37230	17687	30704	30730	40629	40629					0.020414571456285557
LYLETLQTL	9	Unmodified	_LYLETLQTL_					0	0	0			REV__nc|ENSG00000108061|Q9UQ13-2|SHOC2	REV__nc|ENSG00000108061|Q9UQ13-2|SHOC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.3276977539062	2	547.310615	1092.60668	0.34745	0.00019016	-3.6044	-0.0019727	-3.257	-0.0017826	547.8090171267504	63.229	0.19673	63.229	63.14	63.337	0					6	4	2	0	0	0	0.027411	1	5680	5680		74.255	0	1	130780	+		37231	17872	30705	30731	40630	40630					0.0640776307170654
LYLEYHRG	8	Unmodified	_LYLEYHRG_					0	0	0		tr|A0A553SR98|A0A553SR98_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00710PE=3SV=1	tr|A0A553SR98|A0A553SR98_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00710PE=3SV=1	tr|A0A553SR98|A0A553SR98_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00710PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.8056030273438	2	525.771991	1049.52943	-1.116	-0.00058677	-3.3773	-0.0017757	-4.4933	-0.0023625	526.2709657158015	93.878	0.13613	91.371	91.257	91.393	-2.5072					4	2	2	0	0	0	0.028476	1	8199	8199		33.516	22.005	1	21203			37232	34238	30706	30732	40631	40631					0.006645896460213407
LYLFGDTID	9	Unmodified	_LYLFGDTID_					0	0	0			REV__tr|A0A553SJQ7|A0A553SJQ7_NIACIS9familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_17365PE=4SV=1	REV__tr|A0A553SJQ7|A0A553SJQ7_NIACIS9familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_17365PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.8198852539062	2	528.76604	1055.51753	1.74	0.00092008	-4.1058	-0.002171	-2.3658	-0.0012509	528.7638522448459	83.858	0.80043	83.858	83.545	84.345	0					21	18	2	0	0	0	0.027462	1	8749	8749		30.504	0	1	796960	+		37233	30031	30707	30733	40632	40632					-0.00801071887804028
LYLFIVMP	8	Unmodified	_LYLFIVMP_					0	0	0		ENST00000503335.6_1_5:126626657-126667083:+|nuORF;ENST00000418761.6_1_5:126626657-126667083:+|nuORF	ENST00000503335.6_1_5:126626657-126667083:+|nuORF	ENST00000503335.6_1_5:126626657-126667083:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.82525634765625	2	498.285357	994.556161	0.085488	4.2597E-05	4.2483	0.0021169	4.3338	0.0021595	498.2872456040917	112.08	0.52685	110.56	110.21	110.74	-1.5111					17	9	3	0	0	0	0.028476	1	10335	10335		33.493	0	1	43364			37234	11645	30708	30734	40633	40633					0.05866562213020643
LYLFTLIR	8	Unmodified	_LYLFTLIR_					0	0	0			REV__ENST00000337179.9_1_12:93795963-93796278:+|nuORF	REV__ENST00000337179.9_1_12:93795963-93796278:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.8209228515625	2	519.820953	1037.62735	3.2355	0.0016819	-4.237	-0.0022025	-1.0015	-0.00052058	519.8189203176197	133.01	12.026	131.51	130.85	142.87	-1.5016					509	242	6	0	0	0	0.61758	1	13091	13091		60.294	2.4827	1	11423000	+		37235	24594	30709	30735	40634	40634					0.11004398242016578
LYLGHLFFSF	10	Unmodified	_LYLGHLFFSF_					0	0	0		tr|A0A553SFQ4|A0A553SFQ4_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09330PE=4SV=1	tr|A0A553SFQ4|A0A553SFQ4_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09330PE=4SV=1	tr|A0A553SFQ4|A0A553SFQ4_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09330PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	622.330322265625	2	622.329142	1242.64373	0.62474	0.00038879	0.73208	0.00045559	1.3568	0.00084439	622.3294877822864	131.83	0.93044	131.83	131.48	132.41	0					48	19	4	0	0	0	0.43433	1	15305	15305		51.335	13.524	1	474610			37236	33064	30710	30736	40635	40635					0.032114794081280706
LYLGHPQE	8	Unmodified	_LYLGHPQE_					0	0	0			REV__nc|ENSG00000167925|Q8N2G8-2|GHDC	REV__nc|ENSG00000167925|Q8N2G8-2|GHDC	MSMS	OvCa99_classI_Rep5	1	478.7465515136719	2	478.745442	955.476331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.465	1	95.465	94.965	95.965	0								0	0	0	0.30129	1	10424	10424		79.939	5.4226	1		+		37237	21318	30711	30737	40636	40636					-0.003187881366216061
LYLGLFNRL	9	Unmodified	_LYLGLFNRL_					0	0	0		nc|ENSG00000163104|Q9H4L7-3|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	MULTI-MSMS	OvCa99_classI_Rep5	1	554.8313598632812	2	554.829309	1107.64407	1.6589	0.0009204	0.34531	0.00019159	2.0042	0.001112	554.8293909713061	133.19	1.0194	133.19	132.99	134.01	0					43	21	3	0	0	0	0.25214	1	15478	15478		68.485	2.0554	1	849490			37238	6266	30712	30738	40637	40637					0.09454899127990757
LYLGRRKEP	9	Unmodified	_LYLGRRKEP_					0	0	0			REV__nc|ENSG00000196557|O95180-2|CACNA1H	REV__nc|ENSG00000196557|O95180-2|CACNA1H	MULTI-SECPEP	OvCa9_classI_Rep2	2	566.3004150390625	2	566.33529	1130.65603	-1.0029	-0.00056796	0.31562	0.00017875	-0.68724	-0.00038921	566.3352492453876	100.12	1.4381	99.288	98.914	100.35	-0.83051					79	28	4	0	0	0	0.027462	1	9169	9169		37.159	10.363	1	224240	+		37239	29078	30713	30739	40638	40638					0.09592515871190699
LYLHLCEE	8	Unmodified	_LYLHLCEE_					0	0	0			REV__ENST00000519765.1_1_8:101165540-101165606:+|nuORF	REV__ENST00000519765.1_1_8:101165540-101165606:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	510.2467346191406	2	510.24696	1018.47937	1.6589	0.00084645	-3.2636	-0.0016652	-1.6047	-0.00081877	510.2451662979428	127.25	2.2553	127.25	127.01	129.26	0					121	48	4	0	0	0	0.37872	1	14716	14716		92.191	6.8311	1	5144900	+		37240	27049	30714	30740	40639	40639					-0.029132810741202775
LYLHVPFPYL	10	Unmodified	_LYLHVPFPYL_					0	0	0			REV__ENSG00000234828|ENST00000636793|IQCM	REV__ENSG00000234828|ENST00000636793|IQCM	MULTI-MSMS	OvCa9_classI_Rep2	2	421.2377014160156	3	421.237504	1260.69068	1.072	0.00045156	1.7199	0.00072451	2.7919	0.0011761	421.2381678760703	65.257	1.3105	62.533	62.128	63.439	-2.7245					80	25	4	0	0	0	0.62299	1	5029	5029		39.253	0.49923	1	467360	+		37241	23402	30715	30741	40640	40640					0.07076338959291206
LYLIQLPNP	9	Unmodified	_LYLIQLPNP_					0	0	0			REV__FLAD1|p.I436L|1|0.27|ENSG00000160688|chr1:154990199-154990199|A/C|missense_variant	REV__FLAD1|p.I436L|1|0.27|ENSG00000160688|chr1:154990199-154990199|A/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.8125610351562	2	535.815867	1069.61718	2.7682	0.0014832	-2.8489	-0.0015265	-0.08074	-4.3262E-05	535.8144246127898	133.06	1.2255	131.53	131.16	132.39	-1.5244					77	24	5	0	0	0	0.52083	1	12835	12835		40.573	0	1	119770	+		37242	28137	30716	30742	40641	40641					0.08515790516798916
LYLKEVTKF	9	Unmodified	_LYLKEVTKF_					0	0	0		ENSG00000116954|ENST00000373001|RRAGC;nc|ENSG00000025039|Q9NQL2-2|RRAGD;ENSG00000025039|ENST00000369415|RRAGD	ENSG00000116954|ENST00000373001|RRAGC	ENSG00000116954|ENST00000373001|RRAGC	MULTI-MSMS	OvCa99_classI_Rep5	1	570.8367309570312	2	570.8368	1139.65905	2.2743	0.0012982	-0.38789	-0.00022142	1.8864	0.0010768	570.836528726811	84.204	0.99825	84.204	83.965	84.963	0					54	23	4	0	0	0	0.051592	1	8783	8783		117.81	49.024	1	2197500			37243	3220	30718	30743	40642	40642					0.09480346205327805
LYLKHKLKT	9	Unmodified	_LYLKHKLKT_					0	0	0		ENSG00000127666|ENST00000248244|TICAM1	ENSG00000127666|ENST00000248244|TICAM1	ENSG00000127666|ENST00000248244|TICAM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.3035888671875	2	572.366059	1142.71756	1.7688	0.0010124	2.8591	0.0016365	4.6279	0.0026488	572.3675597245734	78.021	0.95274	78.021	77.757	78.709	0					46	22	3	0	0	0	0.027295	1	7970	7970		84.916	33.58	1	1231200			37244	3843	30719	30744	40643	40643					0.15191447570441596
LYLKKRSL	8	Unmodified	_LYLKKRSL_					0	0	0			REV__ENSG00000198886|ENST00000361381|MT-ND4	REV__ENSG00000198886|ENST00000361381|MT-ND4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.7783508300781	2	510.831852	1019.64915	-1.4316	-0.00073133	0.074761	3.819E-05	-1.3569	-0.00069314	510.8316659721654	72.508	1.1655	69.112	68.765	69.93	-3.3961					47	23	3	0	0	0	0.028476	1	5626	5626		55.504	27.622	1	126840	+		37245	23086	30720	30745	40644	40644					0.14011202990604943
LYLKVKGNVF	10	Unmodified	_LYLKVKGNVF_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000472309.1_1_4:179208113-179208287:+|nuORF;ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENST00000418154.1_1_1:64254543-64254969:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	OvCa99_classI_Rep5	1	590.8604125976562	2	590.858067	1179.70158	2.0097	0.0011874	0.040844	2.4133E-05	2.0505	0.0012116	590.8579317749227	87.586	1.2988	87.586	87.338	88.637	0					88	30	5	0	0	0	0.28845	2	9265	9265;9293		82.241	16.48	1	5578400			37246	2643	30721	30746	40645;40646	40645					0.118917413335339
LYLKVLSTL	9	Unmodified	_LYLKVLSTL_					0	0	0			REV__L1MEd_dup8982|chr6:160099964-160100724:+|2.2579659231395626|0.0849947119753676|4.73|429.0|58|3|anti-sense	REV__L1MEd_dup8982|chr6:160099964-160100724:+|2.2579659231395626|0.0849947119753676|4.73|429.0|58|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.2986450195312	2	525.333893	1048.65323	1.1413	0.00059957	1.172	0.00061569	2.3133	0.0012153	525.3346308273053	111.88	0.46074	111.88	111.74	112.2	0					14	9	2	0	0	0	0.027462	1	12709	12709		27.882	0	1	55874	+		37247	28446	30722	30747	40647	40647					0.1308524769365249
LYLLFFVVG	9	Unmodified	_LYLLFFVVG_					0	0	0			REV__tr|A0A553SR56|A0A553SR56_NIACIMechanosensitiveionchannelfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00270PE=4SV=1	REV__tr|A0A553SR56|A0A553SR56_NIACIMechanosensitiveionchannelfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00270PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	535.8131103515625	2	535.817879	1069.6212	-0.3221	-0.00017258	-3.2241	-0.0017275	-3.5462	-0.0019001	535.8161736900166	131.64	1.5686	131.41	131.2	132.77	-0.22697					82	31	4	0	0	0	0.32242	1	12973	12973		60.404	19.625	1	198290	+		37248	30693	30723	30748	40648	40648					0.08917880010517365
LYLLFFVVG	9	Unmodified	_LYLLFFVVG_					0	0	0			REV__tr|A0A553SR56|A0A553SR56_NIACIMechanosensitiveionchannelfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00270PE=4SV=1	REV__tr|A0A553SR56|A0A553SR56_NIACIMechanosensitiveionchannelfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00270PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	535.817879	1069.6212	0.76504	0.00040992	-4.6936	-0.0025149	-3.9286	-0.002105	535.8155280065675	132.84	0.73978	131.71	131.29	132.03	-1.1249	0.1588	-0.00016649	NaN	60.404	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25784	+		37249	30693	30723	30748							0.08917880010517365
LYLLFNKK	8	Unmodified	_LYLLFNKK_					0	0	0			REV__ENST00000468735.6_1_3:42662892-42668896:+|nuORF	REV__ENST00000468735.6_1_3:42662892-42668896:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2778930664062	2	519.820953	1037.62735	0.7969	0.00041424	1.0658	0.00055404	1.8627	0.00096828	519.8213372869882	146.41	3.2469	146.41	143.91	147.16	0					91	66	2	0	0	0	0.028476	1	17023	17023		44.531	7.372	1	46591	+		37250	26233	30724	30749	40649	40649					0.11004398242016578
LYLLFNKK	8	Unmodified	_LYLLFNKK_					0	0	0			REV__ENST00000468735.6_1_3:42662892-42668896:+|nuORF	REV__ENST00000468735.6_1_3:42662892-42668896:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.8200073242188	2	519.820953	1037.62735	3.2355	0.0016819	-4.237	-0.0022025	-1.0015	-0.00052058	519.8189203176197	133.01	12.026	131.51	130.85	142.87	-1.5016					509	242	6	0	0	0	0.49583	1	12961	12961		77.944	9.4591	1	11423000	+		37251	26233	30724	30749	40650	40650					0.11004398242016578
LYLLGNLKN	9	Unmodified	_LYLLGNLKN_					0	0	0			REV__tr|A0A553SPY2|A0A553SPY2_NIACIHADfamilyphosphataseOS=NialliacirculansOX=1397GN=CEQ21_09625PE=4SV=1	REV__tr|A0A553SPY2|A0A553SPY2_NIACIHADfamilyphosphataseOS=NialliacirculansOX=1397GN=CEQ21_09625PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.3141479492188	2	524.313492	1046.61243	-1.6335	-0.00085646	1.2019	0.00063016	-0.43161	-0.0002263	524.3140565145617	124.49	2.9158	123.1	122.13	125.04	-1.3908					109	57	3	0	0	0	0.55588	1	11787	11787		37.159	0	1	87546	+		37252	30583	30725	30750	40651	40651					0.09098906374038052
LYLLIAKT	8	Unmodified	_LYLLIAKT_					0	0	0			REV__ENST00000517567.5_1_8:33342724-33346269:+|nuORF	REV__ENST00000517567.5_1_8:33342724-33346269:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.2811279296875	2	467.802229	933.589904	-0.44683	-0.00020903	-2.4714	-0.0011561	-2.9183	-0.0013652	467.8009125210718	24.913	0.25353	24.913	24.788	25.042	0					6	4	2	0	0	0	0.028476	1	509	509		25.45	0	1	24457	+		37253	27012	30726	30751	40652	40652					0.12045306976403936
LYLLILFYLT	10	Unmodified	_LYLLILFYLT_					0	0	0			REV__ENST00000352393.8_2_20:34213985-34214111:-|nuORF	REV__ENST00000352393.8_2_20:34213985-34214111:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	425.56427001953125	3	424.593176	1270.7577	-0.68862	-0.00029238	4.2585	0.0018081	3.5698	0.0015157	424.59491587373833	70.051	1.9965	66.57	66.201	68.198	-3.4812					86	40	4	0	0	0	0.027193	1	5426	5426		16.717	6.1555	1	197920	+		37254	24725	30727	30752	40653	40653					0.1331494945036411
LYLLILYQCC	10	Unmodified	_LYLLILYQCC_					0	0	0			REV__ENST00000242465.3_1_10:70864372-70864540:+|nuORF	REV__ENST00000242465.3_1_10:70864372-70864540:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	622.7855834960938	2	622.824521	1243.63449	0.40975	0.0002552	-2.4087	-0.0015002	-1.999	-0.001245	622.8231634533871	81.136	0.66573	81.136	80.827	81.493	0					37	15	4	0	0	0	0.027001	1	8375	8375		23.042	1.0826	1	1034500	+		37255	23824	30728	30753	40654	40654					0.02241626735940372
LYLLLGIPSF	10	Unmodified	_LYLLLGIPSF_					0	0	0			REV__LAMA1|p.N2339I|1|0.18|ENSG00000101680|chr18:6966181-6966181|T/A|missense_variant	REV__LAMA1|p.N2339I|1|0.18|ENSG00000101680|chr18:6966181-6966181|T/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.3035278320312	2	568.341718	1134.66888	1.0778	0.00061257	1.2394	0.0007044	2.3172	0.001317	568.3421167419365	132.5	0.43176	132.5	132.36	132.8	0					13	8	2	0	0	0	0.026871	1	15425	15425		21.96	0	1	42156	+		37256	28611	30729	30754	40655	40655					0.10693534210690814
LYLLLQKVF	9	Unmodified	_LYLLLQKVF_					0	0	0			REV__nc|ENSG00000153827|Q14669-4|TRIP12	REV__nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MSMS	OvCa9_classI_Rep3	3	568.8528442382812	2	568.857535	1135.70052	-7.0364	-0.0040027	-0.036741	-2.09E-05	-7.0732	-0.0040236	568.857375140279	161.4	1.8223	160.03	159.69	161.51	-1.3692					107	37	5	0	0	0	0.69895	1	14096	14096		18.324	1.8513	1	827460	+		37257	20349	30730	30755	40656	40656					0.13809526964632823
LYLLRVKI	8	Unmodified	_LYLLRVKI_					0	0	0		tr|A0A7D6VPE6|A0A7D6VPE6_9CLOTRodshape-determiningproteinMreDOS=ClostridiumintestinaleOX=36845GN=mreDPE=3SV=1	tr|A0A7D6VPE6|A0A7D6VPE6_9CLOTRodshape-determiningproteinMreDOS=ClostridiumintestinaleOX=36845GN=mreDPE=3SV=1	tr|A0A7D6VPE6|A0A7D6VPE6_9CLOTRodshape-determiningproteinMreDOS=ClostridiumintestinaleOX=36845GN=mreDPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	509.34564208984375	2	509.344595	1016.67464	2.0337	0.0010359	0.27816	0.00014168	2.3119	0.0011775	509.3445939152494	118	2.0117	118	117.41	119.43	0					92	42	3	0	0	0	0.71369	1	13487	13487		40.573	0	1	512070			37258	34766	30731	30756	40657	40657					0.1669667751303905
LYLLVHRTL	9	Unmodified	_LYLLVHRTL_					0	0	0			REV__GPR155|p.C662Y|1|0.05|ENSG00000163328|chr2:174446639-174446639|C/T|missense_variant	REV__GPR155|p.C662Y|1|0.05|ENSG00000163328|chr2:174446639-174446639|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	564.3509521484375	2	564.350409	1126.68626	-0.90795	-0.0005124	0.67664	0.00038186	-0.23131	-0.00013054	564.3506646111761	134.7	0.74165	133.58	133.31	134.05	-1.1226					28	14	3	0	0	0	0.50149	1	10878	10878		42.396	5.9494	1	39657	+		37259	28162	30732	30757	40658	40658					0.12798874536383664
LYLLYRTL	8	Unmodified	_LYLLYRTL_					0	0	0			REV__nc|ENSG00000172159|A2A2Y4-5|FRMD3	REV__nc|ENSG00000172159|A2A2Y4-5|FRMD3	MULTI-MSMS	OvCa9_classI_Rep2	2	527.817626953125	2	527.81841	1053.62227	0.15404	8.1304E-05	-0.13429	-7.0882E-05	0.019746	1.0422E-05	527.8180746611931	131.65	2.3091	131.42	131.15	133.46	-0.22696					124	46	4	0	0	0	0.65062	2	12965	12960;12965		53.351	5.4358	1	610490	+		37260	21677	30733	30758	40659;40660	40660					0.09760094379430484
LYLNEGSH	8	Unmodified	_LYLNEGSH_					0	0	0			REV__ENSG00000221826|ENST00000327495|PSG3	REV__ENSG00000221826|ENST00000327495|PSG3	MULTI-MSMS	OvCa99_classI_Rep5	1	466.7304992675781	2	466.727249	931.439946	1.6786	0.00078344	4.4208	0.0020633	6.0994	0.0028467	466.72920769704075	127.3	0.85321	127.3	127.05	127.9	0					31	18	2	0	0	0	0.50674	1	14736	14736		76.847	11.043	1	225650	+		37261	23339	30734	30759	40661	40661					-0.028516650333244797
LYLPEYKL	8	Unmodified	_LYLPEYKL_					0	0	0		ENST00000341618.8_2_21:30547632-30547791:+|nuORF	ENST00000341618.8_2_21:30547632-30547791:+|nuORF	ENST00000341618.8_2_21:30547632-30547791:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	519.7994995117188	2	519.797143	1037.57973	-0.59881	-0.00031126	0.88669	0.0004609	0.28788	0.00014964	519.7975456252907	68.67	1.4422	68.67	68.356	69.798	0					90	34	4	0	0	0	0.36941	1	6540	6540		94.006	0	1	15850000			37262	10569	30735	30760	40662	40662					0.06244699251192287
LYLPQEQLT	9	Unmodified	_LYLPQEQLT_					0	0	0		nc|nan|Q9GZU0-2|C6orf62;ENSG00000112308|ENST00000378119|C6orf62	nc|nan|Q9GZU0-2|C6orf62	nc|nan|Q9GZU0-2|C6orf62	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.8038330078125	2	552.800414	1103.58628	-0.24651	-0.00013627	-2.5669	-0.001419	-2.8134	-0.0015553	552.7988650733598	101.82	1.1944	99.555	99.256	100.45	-2.2665					43	22	3	0	0	0	0.27001	1	9162	9162		66.429	2.222	1	121040			37263	2898	30736	30761	40663	40663					0.03862592411906007
LYLPTLTHF	9	Unmodified	_LYLPTLTHF_					0	0	0		ENST00000537473.2_1_12:57058103-57058217:-|nuORF	ENST00000537473.2_1_12:57058103-57058217:-|nuORF	ENST00000537473.2_1_12:57058103-57058217:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	552.8084106445312	2	552.808042	1103.60153	1.8948	0.0010475	0.022879	1.2648E-05	1.9177	0.0010601	552.8079799995212	128.65	0.79347	128.65	128.37	129.17	0					45	16	4	0	0	0	0.13154	2	14927	14906;14927		88.643	8.9303	1	514840			37264	13406	30737	30762	40664;40665	40665					0.05387503999736509
LYLQNNKIT	9	Unmodified	_LYLQNNKIT_					0	0	0		nc|ENSG00000171509|Q9HBX9-5|RXFP1;nc|ENSG00000171509|Q9HBX9-4|RXFP1;ENSG00000171509|ENST00000307765|RXFP1;nc|ENSG00000171509|Q9HBX9-3|RXFP1;nc|ENSG00000171509|Q9HBX9-2|RXFP1	nc|ENSG00000171509|Q9HBX9-5|RXFP1	nc|ENSG00000171509|Q9HBX9-5|RXFP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.8416137695312	2	553.813856	1105.61316	2.1403	0.0011853	1.1979	0.00066343	3.3382	0.0018488	553.8137021579207	74.927	0.8113	74.927	74.557	75.369	0					36	16	4	0	0	0	0.027176	1	7436	7436		111.65	0	1	2251800			37265	7209	30738	30763	40666	40666					0.06457701023077789
LYLQRVITT	9	Unmodified	_LYLQRVITT_					0	0	0		tr|A0A553SMX7|A0A553SMX7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23235PE=4SV=1	tr|A0A553SMX7|A0A553SMX7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23235PE=4SV=1	tr|A0A553SMX7|A0A553SMX7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23235PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8296508789062	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.59983	1	14265	14265		31.955	0	1	245610			37266	33880	30739	30764	40667	40667					0.10094577919790026
LYLQYGMVL	9	Unmodified	_LYLQYGMVL_					0	0	0		ENST00000295958.9_2_4:39553614-39553689:-|nuORF	ENST00000295958.9_2_4:39553614-39553689:-|nuORF	ENST00000295958.9_2_4:39553614-39553689:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	550.7989501953125	2	550.296453	1098.57835	0.012294	6.7651E-06	2.5583	0.0014078	2.5706	0.0014146	550.2977145516436	114.4	1.1495	114.4	114.2	115.35	0					54	24	4	0	0	0	0.42057	1	13102	13102		50.025	4.0726	1	1281500			37267	10127	30740	30765	40668	40668					0.033007418907800457
LYLREELP	8	Unmodified	_LYLREELP_					0	0	0			REV__ENST00000444916.5_3_2:235887388-235943560:+|nuORF	REV__ENST00000444916.5_3_2:235887388-235943560:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.762939453125	2	516.78985	1031.56515	0.10423	5.3864E-05	2.4717	0.0012774	2.5759	0.0013312	517.2925478236278	162.35	0.25084	162.35	162.18	162.43	0					7	4	2	0	0	0	0.028476	1	19018	19018		63.306	11.007	1	23201	+		37268	25880	30741	30766	40669	40669					0.05062627103052364
LYLRFLLT	8	Unmodified	_LYLRFLLT_					0	0	0			REV__ENSG00000178084|ENST00000318351|HTR3C	REV__ENSG00000178084|ENST00000318351|HTR3C	MULTI-MSMS	OvCa9_classI_Rep3	3	519.8201904296875	2	519.820953	1037.62735	-0.033156	-1.7235E-05	-0.58886	-0.0003061	-0.62202	-0.00032334	519.8206593971257	132.68	7.0212	131.56	131.19	138.21	-1.1249					377	142	6	0	0	0	0.59148	2	10744	10744;10781		65.803	5.5092	1	7095700	+		37269	22044	30742	30767	40670;40671	40670					0.11004398242016578
LYLRFLLT	8	Unmodified	_LYLRFLLT_					0	0	0			REV__ENSG00000178084|ENST00000318351|HTR3C	REV__ENSG00000178084|ENST00000318351|HTR3C	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.8209838867188	2	519.820953	1037.62735	3.2355	0.0016819	-4.237	-0.0022025	-1.0015	-0.00052058	519.8189203176197	133.01	12.026	131.51	130.85	142.87	-1.5016					509	242	6	0	0	0	0.71369	1	13116	13116		40.573	1.5511	1	11423000	+		37270	22044	30742	30767	40672	40672					0.11004398242016578
LYLRKHLP	8	Unmodified	_LYLRKHLP_					0	0	0		ENST00000468151.1_1_22:41997103-41998504:-|nuORF	ENST00000468151.1_1_22:41997103-41998504:-|nuORF	ENST00000468151.1_1_22:41997103-41998504:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	520.3250122070312	2	520.324194	1038.63383	1.1231	0.00058437	-4.4036	-0.0022913	-3.2806	-0.001707	520.3219263925699	133.24	4.8671	133.24	131.72	136.58	0					251	104	5	0	0	0	0.64377	1	15918	15918		54.765	2.4655	1	38662000			37271	12322	30743	30768	40673	40673					0.11606336193403877
LYLRVISP	8	Unmodified	_LYLRVISP_					0	0	0			REV__tr|A0A7D6VRA7|A0A7D6VRA7_9CLOTAlpha-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04820PE=3SV=1	REV__tr|A0A7D6VRA7|A0A7D6VRA7_9CLOTAlpha-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04820PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	480.7972412109375	2	480.797478	959.580402	-0.62495	-0.00030048	0.86212	0.0004145	0.23716	0.00011403	480.7976122112674	115	2.3234	114.88	114.5	116.83	-0.11777					104	46	4	0	0	0	0.61436	2	10954	10954;10980		60.972	5.4677	1	301760	+		37272	31400	30744	30769	40674;40675	40674					0.09899538690888221
LYLRVISP	8	Unmodified	_LYLRVISP_					0	0	0			REV__tr|A0A7D6VRA7|A0A7D6VRA7_9CLOTAlpha-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04820PE=3SV=1	REV__tr|A0A7D6VRA7|A0A7D6VRA7_9CLOTAlpha-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04820PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.7971496582031	2	480.797478	959.580402	-0.10363	-4.9827E-05	-0.62992	-0.00030286	-0.73355	-0.00035269	480.79694462562895	116.33	2.3302	114.97	114.65	116.98	-1.3645					106	44	4	0	0	0	0.68714	1	10857	10857		45.952	1.8352	1	303270	+		37273	31400	30744	30769	40676	40676					0.09899538690888221
LYLRYNTIYVR	11	Unmodified	_LYLRYNTIYVR_					0	0	0			REV__ENST00000306167.11_1_X:149761076-149807431:+|nuORF	REV__ENST00000306167.11_1_X:149761076-149807431:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	491.9449157714844	3	491.945271	1472.81398	0.70966	0.00034912	-1.567	-0.00077087	-0.85733	-0.00042176	491.94445153692084	66.624	1.413	63.717	63.406	64.819	-2.9073					79	27	4	0	0	0	0.72477	1	2759	2759		18.531	1.3643	1	253730	+		37274	21591	30745	30770	40677	40677					0.09648970339731022
LYLSHVALY	9	Unmodified	_LYLSHVALY_					0	0	0			REV__chr21:42382234-42383970|417|35.64|0.95|5.24|-|1|TMPRSS3,TMPRSS3|1	REV__chr21:42382234-42383970|417|35.64|0.95|5.24|-|1|TMPRSS3,TMPRSS3|1	MULTI-MSMS	OvCa99_classI_Rep5	1	539.8019409179688	2	539.800217	1077.58588	1.8655	0.001007	-0.03216	-1.736E-05	1.8333	0.00098963	539.8001818135513	117.29	1.3482	117.29	117	118.34	0					65	28	5	0	0	0	0.25214	1	13448	13448		68.485	2.6815	1	1483500	+		37275	16030	30746	30771	40678	40678					0.05019217482708882
LYLSITGLLFA	11	Unmodified	_LYLSITGLLFA_					0	0	0			REV__ENST00000545225.5_2_17:40994478-40994634:+|nuORF	REV__ENST00000545225.5_2_17:40994478-40994634:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	404.2439270019531	3	404.240914	1209.70091	1.5188	0.00061396	2.527	0.0010215	4.0458	0.0016355	404.241836865177	21.149	1.0267	19.81	19.548	20.574	-1.3386					42	20	3	0	0	0	0.70518	1	145	145		24.232	3.3947	1	131090	+		37276	27410	30747	30772	40679	40679					0.10444901893833958
LYLSLLLNKSI	11	Unmodified	_LYLSLLLNKSI_					0	0	0			REV__tr|A0A553SRN2|A0A553SRN2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01345PE=4SV=1	REV__tr|A0A553SRN2|A0A553SRN2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01345PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	426.26800537109375	3	426.267351	1275.78022	-0.55809	-0.00023789	-2.3081	-0.00098389	-2.8662	-0.0012218	426.2662234316524	100.93	1.894	98.659	98.135	100.03	-2.2665					86	37	4	0	0	0	0.69081	1	9041	9041		35.178	6.0082	1	190440	+		37277	30751	30748	30773	40680	40680					0.1533654884799489
LYLSLLLNKSI	11	Unmodified	_LYLSLLLNKSI_					0	0	0			REV__tr|A0A553SRN2|A0A553SRN2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01345PE=4SV=1	REV__tr|A0A553SRN2|A0A553SRN2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01345PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		3	426.267351	1275.78022	-0.074108	-3.159E-05	-2.4939	-0.0010631	-2.568	-0.0010947	426.6005926326907	100.16	1.801	98.555	98.223	100.02	-1.6053	-0.051978	-0.00017954	NaN	35.178	81	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236950	+		37278	30751	30748	30773							0.1533654884799489
LYLSLLLNKSI	11	Unmodified	_LYLSLLLNKSI_					0	0	0			REV__tr|A0A553SRN2|A0A553SRN2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01345PE=4SV=1	REV__tr|A0A553SRN2|A0A553SRN2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01345PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		3	426.267351	1275.78022	-0.55809	-0.00023789	-2.3081	-0.00098389	-2.8662	-0.0012218	426.2662234316524	100.93	1.894	98.659	98.135	100.03	-2.2665	0.051978	5.798E-05	NaN	35.178	86	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190440	+		37279	30751	30748	30773							0.1533654884799489
LYLSNLAN	8	Unmodified	_LYLSNLAN_					0	0	0		nc|ENSG00000134369|Q8NEY1-7|NAV1;nc|ENSG00000134369|Q8NEY1-2|NAV1;nc|ENSG00000134369|Q8NEY1-4|NAV1;nc|ENSG00000134369|Q8NEY1-3|NAV1;nc|ENSG00000134369|Q8NEY1|NAV1;ENSG00000134369|ENST00000685211|NAV1;nc|ENSG00000134369|Q8NEY1-5|NAV1	nc|ENSG00000134369|Q8NEY1-7|NAV1	nc|ENSG00000134369|Q8NEY1-7|NAV1	MULTI-MSMS	OvCa99_classI_Rep5	1	454.2488098144531	2	454.247818	906.481082	0.30474	0.00013843	-0.31523	-0.00014319	-0.010491	-4.7655E-06	454.24752437154666	52.586	0.8254	52.586	52.347	53.172	0					49	18	4	0	0	0	0.42649	1	4122	4122		84.916	5.4645	1	2837100			37280	15028	30749	30774	40681	40681					0.024100960061332444
LYLSRVQEQ	9	Unmodified	_LYLSRVQEQ_					0	0	0			REV__SBF2|p.L1514Ffs*17|1|0.21|ENSG00000133812|chr11:9795861-9795862|-/TTGGGGATGTTGCCTGGACCTTGGAA|frameshift_variant	REV__SBF2|p.L1514Ffs*17|1|0.21|ENSG00000133812|chr11:9795861-9795862|-/TTGGGGATGTTGCCTGGACCTTGGAA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	568.8116455078125	2	568.308938	1134.60332	0.90941	0.00051683	-1.0224	-0.00058106	-0.11302	-6.4233E-05	568.8093701973515	105.68	1.5339	105.68	104.96	106.49	0					79	34	5	0	0	0	0.2784	1	11909	11909		65.465	12.529	1	2388800	+		37281	19158	30750	30775	40682	40682					0.04140513017705416
LYLSRVQEQ	9	Unmodified	_LYLSRVQEQ_					0	0	0			REV__SBF2|p.L1514Ffs*17|1|0.21|ENSG00000133812|chr11:9795861-9795862|-/TTGGGGATGTTGCCTGGACCTTGGAA|frameshift_variant	REV__SBF2|p.L1514Ffs*17|1|0.21|ENSG00000133812|chr11:9795861-9795862|-/TTGGGGATGTTGCCTGGACCTTGGAA|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	568.308938	1134.60332	-0.55671	-0.00031638	-0.24555	-0.00013955	-0.80226	-0.00045593	568.3090349669429	106.09	1.1974	105.66	105.1	106.3	-0.43642	-0.053671	0.0007263	NaN	65.465	60	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160060	+		37282	19158	30750	30775							0.04140513017705416
LYLTEAAIF	9	Unmodified	_LYLTEAAIF_					0	0	0		ENST00000402141.1_1_6:143757385-143757844:+|nuORF	ENST00000402141.1_1_6:143757385-143757844:+|nuORF	ENST00000402141.1_1_6:143757385-143757844:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.8214111328125	2	520.786776	1039.559	0.72045	0.0003752	-3.5083	-0.0018271	-2.7879	-0.0014519	520.784844937667	143.67	2.5589	143.67	142.09	144.64	0					90	51	4	0	0	0	0.027462	1	16733	16733		42.474	14.592	1	262760			37283	11425	30751	30776	40683	40683					0.040801088714943035
LYLTLVRKMK	10	Unmodified	_LYLTLVRKMK_					0	0	0		ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	MULTI-SECPEP	OvCa99_classI_Rep5	1	422.2322998046875	3	422.265176	1263.7737	0.2186	9.2306E-05	3.2066	0.001354	3.4252	0.0014464	422.2670120047705	51.261	0.21319	51.261	51.078	51.291	0					5	4	2	0	0	0	0.027033	1	3925	3925		27.047	0.98393	1	71161			37284	8849	30752	30777	40684	40684					0.15236332415634024
LYLTTQRPK	9	Unmodified	_LYLTTQRPK_					0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-MSMS	OvCa99_classI_Rep5	1	560.3301391601562	2	560.329673	1118.64479	3.1289	0.0017532	-1.7714	-0.00099254	1.3576	0.00076069	560.3285747466892	99.383	1.1877	99.383	98.506	99.694	0					55	28	3	0	0	0	0.27001	1	10997	10997		66.429	10.925	1	3128800	+		37285	22589	30753	30778	40685	40685					0.09021693777026485
LYLTYCPGGVE	11	Unmodified	_LYLTYCPGGVE_					0	0	0			REV__ENSG00000130338|ENST00000367097|TULP4	REV__ENSG00000130338|ENST00000367097|TULP4	MULTI-SECPEP	OvCa99_classI_Rep5	1	608.3695678710938	2	607.791732	1213.56891	1.8126	0.0011017	2.254	0.00137	4.0667	0.0024717	607.7925115540386	109.02	0.61142	109.02	108.67	109.28	0					28	13	3	0	0	0	0.025377	1	12338	12338		39.253	0	1	284020	+		37286	18941	30754	30779	40686	40686					-0.029330711854072433
LYLVARAVKL	10	Unmodified	_LYLVARAVKL_					0	0	0			REV__STRIP2|p.N588Tfs*21|1|0.05|ENSG00000128578|chr7:129464723-129464723|C/-|frameshift_variant	REV__STRIP2|p.N588Tfs*21|1|0.05|ENSG00000128578|chr7:129464723-129464723|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	573.3756713867188	2	573.373884	1144.73321	1.2835	0.00073595	-0.10761	-6.1699E-05	1.1759	0.00067425	573.3736940622971	102.74	4.5051	102.74	102.17	106.67	0					254	104	3	0	0	0	0.37918	1	11454	11454		71.296	7.9894	1	5667200	+		37287	18859	30755	30780	40687	40687					0.16663734087501325
LYLVLELKN	9	Unmodified	_LYLVLELKN_					0	0	0		ENST00000309594.4_1_13:21751380-21751524:+|nuORF	ENST00000309594.4_1_13:21751380-21751524:+|nuORF	ENST00000309594.4_1_13:21751380-21751524:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	552.8385009765625	2	552.8368	1103.65905	1.804	0.00099732	0.50764	0.00028064	2.3116	0.001278	552.8369085938746	137.91	0.85736	137.91	137.64	138.5	0					35	18	3	0	0	0	0.37135	1	16102	16102		54.776	1.8396	1	183030			37288	10277	30756	30781	40688	40688					0.11136346205330483
LYLVLFFDNK	10	Unmodified	_LYLVLFFDNK_					0	0	0		nc|ENSG00000156983|P55201-3|BRPF1;nc|ENSG00000156983|P55201|BRPF1;ENSG00000156983|ENST00000383829|BRPF1;nc|ENSG00000156983|P55201-4|BRPF1	nc|ENSG00000156983|P55201-3|BRPF1	nc|ENSG00000156983|P55201-3|BRPF1	MULTI-MSMS	OvCa99_classI_Rep5	1	636.3561401367188	2	636.355357	1270.69616	1.8528	0.001179	0.095168	6.0561E-05	1.948	0.0012396	636.85795153053	138.38	0.43533	138.38	138.06	138.5	0					12	8	2	0	0	0	0.63752	1	16153	16153		40.778	3.27	1	125620			37289	5868	30757	30782	40689	40689					0.07164017751097163
LYLYEFAV	8	Unmodified	_LYLYEFAV_					0	0	0			REV__ENSG00000070601|ENST00000377765|FRMPD1	REV__ENSG00000070601|ENST00000377765|FRMPD1	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.2674865722656	2	509.268219	1016.52188	2.152	0.001096	1.0052	0.00051194	3.1573	0.0016079	509.268570857001	27.603	0.36926	24.893	24.742	25.111	-2.7097					11	8	2	0	0	0	0.028476	1	484	484		13.775	0	1	12497	+		37290	16883	30758	30783	40690	40690					0.014284373257623884
LYLYHLAGA	9	Unmodified	_LYLYHLAGA_					0	0	0			REV__PKN1-EMR3|1|fusion	REV__PKN1-EMR3|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.75958251953125	2	510.779285	1019.54402	-0.18378	-9.3874E-05	-1.3807	-0.00070524	-1.5645	-0.00079911	510.77823216144884	73.073	0.63536	73.073	72.723	73.359	0					34	15	4	0	0	0	0.027462	1	7175	7175		29.842	3.0454	1	435690	+		37291	16279	30759	30784	40691	40691					0.0350266179417531
LYLYRANCDT	10	Unmodified	_LYLYRANCDT_					0	0	0			REV__tr|A0A553SGN3|A0A553SGN3_NIACIPhosphoribosylformylglycinamidinesynthasesubunitPurLOS=NialliacirculansOX=1397GN=purLPE=3SV=1	REV__tr|A0A553SGN3|A0A553SGN3_NIACIPhosphoribosylformylglycinamidinesynthasesubunitPurLOS=NialliacirculansOX=1397GN=purLPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	616.2929077148438	2	616.29243	1230.57031	1.731	0.0010668	-3.1446	-0.001938	-1.4136	-0.0008712	616.290130209285	129.42	0.55826	129.42	129.12	129.68	0					23	11	3	0	0	0	0.45225	1	15011	15011		60.972	7.6205	1	260300	+		37292	29724	30760	30785	40692	40692					-0.035754370966515125
LYMKNGQGF	9	Unmodified	_LYMKNGQGF_					0	0	0		nc|ENSG00000254893|A6NIZ1|RAP1BL;nc|ENSG00000127314|P61224-4|RAP1B;nc|ENSG00000127314|P61224-3|RAP1B;ENSG00000127314|ENST00000250559|RAP1B;ENST00000494982.1_1_1:112233982-112249293:+|nuORF;ENSG00000116473|ENST00000369709|RAP1A	nc|ENSG00000254893|A6NIZ1|RAP1BL	nc|ENSG00000254893|A6NIZ1|RAP1BL	MULTI-MSMS	OvCa99_classI_Rep5	1	529.2609252929688	2	529.260402	1056.50625	-0.44121	-0.00023352	0.31482	0.00016662	-0.12639	-6.6892E-05	529.2604151458963	68.473	1.1998	68.473	68.233	69.433	0					52	28	4	0	0	0	0.21395	1	6466	6466		73.975	10.668	1	2898700			37293	15354	30761	30786	40693	40693					-0.019741724629284363
LYMLVYMSH	9	Unmodified	_LYMLVYMSH_					0	0	0		LTR43_dup339|chr19:21442050-21442665:-|1.4191927716208783|0.4910537442065089|1.53|429.0|26|1|anti-sense	LTR43_dup339|chr19:21442050-21442665:-|1.4191927716208783|0.4910537442065089|1.53|429.0|26|1|anti-sense	LTR43_dup339|chr19:21442050-21442665:-|1.4191927716208783|0.4910537442065089|1.53|429.0|26|1|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	578.7813720703125	2	578.780113	1155.54567	1.0032	0.00058064	0.10198	5.9024E-05	1.1052	0.00063967	578.7806231576791	146.64	1.1274	146.64	146.38	147.5	0					54	22	4	0	0	0	0.19716	1	17160	17160		76.847	13.868	1	311930			37294	14807	30762	30787	40694	40694					-0.02587788503728916
LYMPKLLYF	9	Unmodified	_LYMPKLLYF_					0	0	0		nc|ENSG00000170786|Q8N3Y7-2|SDR16C5;ENSG00000170786|ENST00000303749|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	MULTI-MSMS	OvCa99_classI_Rep5	1	594.330078125	2	594.330296	1186.64604	1.3041	0.00077508	0.82357	0.00048947	2.1277	0.0012646	594.3305743452621	143.29	1.3269	143.29	142.93	144.26	0					73	26	4	0	0	0	0.27546	2	16727	16727;16747		65.803	8.2752	1	1219100			37295	7135	30763	30788	40695;40696	40695					0.06018191821590335
LYMQRKKIVED	11	Unmodified	_LYMQRKKIVED_					0	0	0			REV__tr|A0A553SK75|A0A553SK75_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_18075PE=4SV=1	REV__tr|A0A553SK75|A0A553SK75_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_18075PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	474.93145751953125	3	474.930633	1421.77007	2.1726	0.0010318	-1.3253	-0.00062941	0.8473	0.00040241	474.9297967720246	64.298	0.96104	61.304	60.987	61.948	-2.9933					38	18	3	0	0	0	0.71831	1	2493	2493		23.378	4.1152	1	42535	+		37296	30086	30764	30789	40697	40697					0.0760561785111804
LYMQRKKIVED	11	Unmodified	_LYMQRKKIVED_					0	0	0			REV__tr|A0A553SK75|A0A553SK75_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_18075PE=4SV=1	REV__tr|A0A553SK75|A0A553SK75_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_18075PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		3	474.930633	1421.77007	2.1726	0.0010318	-1.3253	-0.00062941	0.8473	0.00040241	474.9297967720246	64.298	0.96104	61.304	60.987	61.948	-2.9933	-0.042526	-0.00041496	NaN	23.378	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42535	+		37297	30086	30764	30789							0.0760561785111804
LYMQRKKIVED	11	Unmodified	_LYMQRKKIVED_					0	0	0			REV__tr|A0A553SK75|A0A553SK75_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_18075PE=4SV=1	REV__tr|A0A553SK75|A0A553SK75_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_18075PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	474.930633	1421.77007	0.7603	0.00036109	-0.21021	-9.9835E-05	0.55009	0.00026126	474.9303939565072	64.875	1.0172	61.389	60.969	61.987	-3.4854	0.042526	0.0011738	NaN	23.378	22	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41245	+		37298	30086	30764	30789							0.0760561785111804
LYMTRIQKE	9	Oxidation (M)	_LYM(Oxidation (M))TRIQKE_		LYM(1)TRIQKE		LYM(100)TRIQKE	0	0	1		CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant;ENSG00000084774|ENST00000264705|CAD;CAD|p.F2152C|1|0.07|ENSG00000084774|chr2:27242948-27242948|T/G|missense_variant	CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	599.3193969726562	2	599.318448	1196.62234	-0.054628	-3.274E-05	-2.3572	-0.0014127	-2.4118	-0.0014455	599.3169053202639	67.586	0.7063	67.586	67.371	68.077	0					46	17	4	0	0	0	0.074342	1	6330	6330		104.75	14.146	1	3529400			37299	176	30765	30790	40698	40698		1			0.031897263171231316
LYMTRIQKE	9	Oxidation (M)	_LYM(Oxidation (M))TRIQKE_					0	0	1		CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant;ENSG00000084774|ENST00000264705|CAD;CAD|p.F2152C|1|0.07|ENSG00000084774|chr2:27242948-27242948|T/G|missense_variant	CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	599.318448	1196.62234	-0.75442	-0.00045214	0.65121	0.00039028	-0.10321	-6.1855E-05	599.3199371360637	69.76	0.14685	67.189	67.115	67.262	-2.5707	-0.19811	0.0033176	NaN	104.75	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9899.7			37300	176	30765	30790				1			0.031897263171231316
LYMVTKQSL	9	Unmodified	_LYMVTKQSL_					0	0	0			REV__ENST00000604971.5_1_6:350843-350942:+|nuORF	REV__ENST00000604971.5_1_6:350843-350942:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.8310546875	2	541.79936	1081.58417	-0.47802	-0.00025899	4.3582	0.0023613	3.8802	0.0021023	541.8010574339215	54.889	0.64555	54.889	54.547	55.193	0					33	14	4	0	0	0	0.027462	1	4432	4432		23.042	2.0956	1	700140	+		37301	28062	30766	30791	40699	40699					0.046638404024406555
LYMVVPLVF	9	Unmodified	_LYMVVPLVF_					0	0	0		ENSG00000183269|ENST00000537935|OR52E8;OR52E8|p.L165M|1|0.26|ENSG00000183269|chr11:5857210-5857210|G/T|missense_variant	ENSG00000183269|ENST00000537935|OR52E8	ENSG00000183269|ENST00000537935|OR52E8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.2724609375	2	540.811739	1079.60893	-0.013026	-7.0447E-06	-4.1724	-0.0022565	-4.1854	-0.0022635	540.8092862401286	89.753	1.0574	87.178	86.95	88.007	-2.575					41	20	3	0	0	0	0.027462	1	7776	7776		49.211	8.6382	1	188150			37302	8060	30767	30792	40700	40700					0.07230520275834351
LYMYLNDEYKP	11	Unmodified	_LYMYLNDEYKP_					0	0	0			REV__SCN2A|p.D1935Vfs*2|1|0.11|ENSG00000136531|chr2:165389608-165389609|-/GTTT|frameshift_variant	REV__SCN2A|p.D1935Vfs*2|1|0.11|ENSG00000136531|chr2:165389608-165389609|-/GTTT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	482.7833557128906	3	483.563728	1447.66935	-0.38579	-0.00018655	0.48209	0.00023312	0.096304	4.6569E-05	483.56380643672895	80.963	0.30925	78.64	78.44	78.749	-2.3226					7	5	2	0	0	0	0.026277	1	4455	4455		23.378	0	1	15103	+		37303	19391	30768	30793	40701	40701					-0.03657458922407386
LYNEAILTF	9	Unmodified	_LYNEAILTF_					0	0	0			REV__ENSG00000145623|ENST00000274276|OSMR	REV__ENSG00000145623|ENST00000274276|OSMR	MULTI-MSMS	OvCa99_classI_Rep5	1	542.2886962890625	2	542.289682	1082.56481	-0.085108	-4.6153E-05	-3.8416	-0.0020833	-3.9267	-0.0021294	542.2874748734855	71.087	3.0308	71.087	70.761	73.792	0					171	75	4	0	0	0	0.12515	1	6937	6937		90.37	15.853	1	36725000	+		37304	19971	30769	30794	40702	40702					0.02683207383165609
LYNEISNL	8	Unmodified	_LYNEISNL_					0	0	0			REV__nc|ENSG00000047346|Q32MH5-2|ATOSA	REV__nc|ENSG00000047346|Q32MH5-2|ATOSA	MULTI-MSMS	OvCa99_classI_Rep5	1	483.2518005371094	2	483.250557	964.486562	0.80856	0.00039074	1.6332	0.00078926	2.4418	0.00118	483.2512267918651	140.16	1.055	140.16	139.88	140.93	0					49	21	3	0	0	0	0.13946	1	16381	16381		134.81	0.045152	1	709780	+		37305	16654	30770	30795	40703	40703					0.002897747979545784
LYNGATRKL	9	Unmodified	_LYNGATRKL_					0	0	0		DNAJA1|p.T279Ifs*26|1|0.14|ENSG00000086061|chr9:33036651-33036651|C/-|frameshift_variant;nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;NFX1-DNAJA1|1|fusion	DNAJA1|p.T279Ifs*26|1|0.14|ENSG00000086061|chr9:33036651-33036651|C/-|frameshift_variant	DNAJA1|p.T279Ifs*26|1|0.14|ENSG00000086061|chr9:33036651-33036651|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	518.3004150390625	2	518.300916	1034.58728	-0.54281	-0.00028134	-0.29046	-0.00015054	-0.83326	-0.00043188	518.3007229100514	43.119	1.5042	43.119	42.665	44.169	0					95	34	5	0	0	0	0.10502	1	2842	2842		95.815	15.876	1	11030000			37306	750	30771	30796	40704	40704					0.07136851571476654
LYNGLRASLL	10	Unmodified	_LYNGLRASLL_					0	0	0		nc|ENSG00000174953|Q9H2U1-3|DHX36;nc|ENSG00000174953|Q9H2U1-2|DHX36;ENSG00000174953|ENST00000496811|DHX36	nc|ENSG00000174953|Q9H2U1-3|DHX36	nc|ENSG00000174953|Q9H2U1-3|DHX36	MULTI-MSMS	OvCa99_classI_Rep5	1	560.33056640625	2	560.329673	1118.64479	3.1289	0.0017532	-1.7714	-0.00099254	1.3576	0.00076069	560.3285747466892	99.383	1.1877	99.383	98.506	99.694	0					55	28	3	0	0	0	0.35465	1	11012	11012		74.255	2.3776	1	3128800			37307	7503	30772	30797	40705	40705					0.09021693777026485
LYNGLSKLV	9	Unmodified	_LYNGLSKLV_					0	0	0			REV__tr|A0A553SNX3|A0A553SNX3_NIACIChemotaxisproteinCheAOS=NialliacirculansOX=1397GN=CEQ21_25390PE=4SV=1	REV__tr|A0A553SNX3|A0A553SNX3_NIACIChemotaxisproteinCheAOS=NialliacirculansOX=1397GN=CEQ21_25390PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.80035400390625	2	503.800217	1005.58588	0.36429	0.00018353	-0.64583	-0.00032537	-0.28154	-0.00014184	503.7996888650338	97.331	1.5153	94.953	94.659	96.175	-2.3786					73	29	3	0	0	0	0.37135	1	8628	8628		54.776	2.4771	1	217550	+		37308	30470	30773	30798	40706	40706					0.08331217482714237
LYNILKFII	9	Unmodified	_LYNILKFII_					0	0	0			REV__tr|A0A7D6VT67|A0A7D6VT67_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04140PE=4SV=1	REV__tr|A0A7D6VT67|A0A7D6VT67_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04140PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	568.8587036132812	2	568.857535	1135.70052	1.0597	0.00060279	0.66106	0.00037605	1.7207	0.00097884	568.8577347609626	131.55	1.6957	131.55	131.25	132.94	0					89	35	4	0	0	0	0.34496	1	15318	15318		57.811	11.859	1	1323300	+		37309	31577	30774	30799	40707	40707					0.1380952696465556
LYNLCMIRP	9	Unmodified	_LYNLCMIRP_					0	0	0			REV__ENSG00000187959|ENST00000344935|CPSF4L	REV__ENSG00000187959|ENST00000344935|CPSF4L	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.7658081054688	2	561.793555	1121.57256	0.36659	0.00020595	-4.1011	-0.002304	-3.7345	-0.002098	561.7913732655443	41.004	0.26797	41.004	40.881	41.149	0					8	5	2	0	0	0	0.027462	1	2534	2534		30.504	8.5438	1	31741	+		37310	22678	30775	30800	40708	40708					0.016633201074455428
LYNLEMEQM	9	Unmodified	_LYNLEMEQM_					0	0	0		ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2	ENSG00000066777|ENST00000262215|ARFGEF1	ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.7755737304688	2	585.762117	1169.50968	0.72701	0.00042585	2.0961	0.0012278	2.8231	0.0016537	585.7633713070575	151.21	0.85762	151.21	150.79	151.65	0					26	16	3	0	0	0	0.027462	1	17697	17697		34.173	6.2903	1	96669			37311	1359	30776	30801	40709	40709					-0.06829290471273453
LYNLKSLEV	9	Unmodified	_LYNLKSLEV_					0	0	0		nc|ENSG00000169783|Q96FE5-2|LINGO1;ENSG00000169783|ENST00000355300|LINGO1	nc|ENSG00000169783|Q96FE5-2|LINGO1	nc|ENSG00000169783|Q96FE5-2|LINGO1	MULTI-MSMS	OvCa9_classI_Rep4_	4	539.8133544921875	2	539.810782	1077.60701	-1.1452	-0.00061819	-0.098768	-5.3316E-05	-1.244	-0.0006715	539.8104350473308	101.67	0.797	99.4	99.02	99.817	-2.2665					41	15	4	0	0	0	0.33652	1	9138	9138		58.782	0	1	167330			37312	7038	30777	30802	40710	40710					0.0713118279156788
LYNLKSLEV	9	Unmodified	_LYNLKSLEV_					0	0	0		nc|ENSG00000169783|Q96FE5-2|LINGO1;ENSG00000169783|ENST00000355300|LINGO1	nc|ENSG00000169783|Q96FE5-2|LINGO1	nc|ENSG00000169783|Q96FE5-2|LINGO1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	539.810782	1077.60701	-1.5985	-0.00086287	0.82581	0.00044578	-0.77265	-0.00041709	539.8111834634178	100.25	0.84288	99.42	99.014	99.856	-0.83052	0.0014627	0.000748	NaN	58.782	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143330			37313	7038	30777	30802							0.0713118279156788
LYNLKSLEV	9	Unmodified	_LYNLKSLEV_					0	0	0		nc|ENSG00000169783|Q96FE5-2|LINGO1;ENSG00000169783|ENST00000355300|LINGO1	nc|ENSG00000169783|Q96FE5-2|LINGO1	nc|ENSG00000169783|Q96FE5-2|LINGO1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	539.810782	1077.60701	-0.21581	-0.0001165	-0.5057	-0.00027298	-0.72151	-0.00038948	539.8104697985476	101.04	1.179	99.436	98.898	100.08	-1.6053	0.017614	-0.00068952	NaN	58.782	66	22	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185600			37314	7038	30777	30802							0.0713118279156788
LYNLPERKL	9	Unmodified	_LYNLPERKL_					0	0	0			REV__ENSG00000121351|ENST00000240652|IAPP	REV__ENSG00000121351|ENST00000240652|IAPP	MULTI-MSMS	OvCa99_classI_Rep5	1	573.3394775390625	2	573.337498	1144.66044	-0.36083	-0.00020688	0.45276	0.00025959	0.091935	5.271E-05	573.3377454780668	71.372	2.2453	71.372	71.031	73.276	0					141	55	5	0	0	0	0.12515	1	6966	6966		90.37	8.1293	1	49267000	+		37315	18541	30778	30803	40711	40711					0.0938998029407685
LYNLQKRT	8	Unmodified	_LYNLQKRT_					0	0	0			REV__ENST00000470269.5_1_15:58902390-58913692:-|nuORF	REV__ENST00000470269.5_1_15:58902390-58913692:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	518.3009643554688	2	518.300916	1034.58728	-0.54281	-0.00028134	-0.29046	-0.00015054	-0.83326	-0.00043188	518.3007229100514	43.119	1.5042	43.119	42.665	44.169	0					95	34	5	0	0	0	0.37872	1	2812	2812		92.191	14.873	1	11030000	+		37316	26257	30779	30804	40712	40712					0.07136851571453917
LYNNFTAL	8	Unmodified	_LYNNFTAL_					0	0	0		tr|A0A553SFT1|A0A553SFT1_NIACIM48familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_09450PE=3SV=1	tr|A0A553SFT1|A0A553SFT1_NIACIM48familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_09450PE=3SV=1	tr|A0A553SFT1|A0A553SFT1_NIACIM48familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_09450PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	478.24652099609375	2	478.247818	954.481082	-0.90428	-0.00043247	-3.6266	-0.0017344	-4.5309	-0.0021669	478.24587763852645	64.198	1.0219	64.198	63.894	64.916	0					58	24	3	0	0	0	0.38598	1	5813	5813		90.777	11.326	1	3470800			37317	33073	30780	30805	40713	40713					0.0020209600613725343
LYNPKITSEL	10	Unmodified	_LYNPKITSEL_					0	0	0		RIF1|p.L2186Qfs*51|1|0.07|ENSG00000080345|chr2:151466077-151466077|T/-|frameshift_variant;nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	RIF1|p.L2186Qfs*51|1|0.07|ENSG00000080345|chr2:151466077-151466077|T/-|frameshift_variant	RIF1|p.L2186Qfs*51|1|0.07|ENSG00000080345|chr2:151466077-151466077|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	589.3305053710938	2	589.326796	1176.63904	2.9391	0.0017321	-0.46895	-0.00027636	2.4702	0.0014557	589.3263822922119	89.921	0.66554	89.921	89.681	90.346	0					34	15	3	0	0	0	0.11632	1	9623	9623		109.48	29.766	1	2060900			37318	1634	30781	30806	40714	40714					0.057785504747243976
LYNWSVGFD	9	Unmodified	_LYNWSVGFD_					0	0	0			REV__nc|ENSG00000189056|P78509-3|RELN	REV__nc|ENSG00000189056|P78509-3|RELN	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.369873046875	2	550.756007	1099.49746	1.4096	0.00077637	1.4696	0.00080942	2.8793	0.0015858	550.7565052818551	118.81	0.42732	118.81	118.63	119.05	0					11	8	2	0	0	0	0.02741	1	13636	13636		71.296	21.854	1	53468	+		37319	22758	30782	30807	40715	40715					-0.04830822827761949
LYPEGLAQL	9	Unmodified	_LYPEGLAQL_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1;ENST00000563305.1_1_16:67472744-67473248:-|nuORF	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	MULTI-MSMS	OvCa99_classI_Rep5	1	502.2780456542969	2	502.276575	1002.5386	1.2313	0.00061846	0.41965	0.00021078	1.651	0.00082924	502.27667389611	123.35	1.5162	123.35	122.86	124.37	0					81	32	5	0	0	0	0.074342	1	14221	14221		104.75	5.3716	1	2587700			37320	6026	30783	30808	40716	40716					0.03742938211712499
LYPEIFEKF	9	Unmodified	_LYPEIFEKF_					0	0	0		ENSG00000119778|ENST00000238789|ATAD2B;nc|ENSG00000119778|Q9ULI0-2|ATAD2B;ENST00000366438.3_1_2:24079281-24090752:-|nuORF	ENSG00000119778|ENST00000238789|ATAD2B	ENSG00000119778|ENST00000238789|ATAD2B	MULTI-MSMS	OvCa99_classI_Rep5	1	593.3141479492188	2	593.313158	1184.61176	1.722	0.0010217	-0.15951	-9.464E-05	1.5625	0.00092703	593.3129769185394	125.09	1.578	125.09	124.74	126.32	0					66	36	2	0	0	0	0.1944	2	14431	14431;14455		77.318	2.7257	1	2569600			37321	3395	30784	30809	40717;40718	40717					0.026840669343073387
LYPEMSNGTL	10	Unmodified	_LYPEMSNGTL_					0	0	0		ENSG00000176971|ENST00000318627|FIBIN	ENSG00000176971|ENST00000318627|FIBIN	ENSG00000176971|ENST00000318627|FIBIN	MULTI-MSMS	OvCa99_classI_Rep5	1	562.766357421875	2	562.768257	1123.52196	0.060279	3.3923E-05	-3.716	-0.0020913	-3.6557	-0.0020573	562.7660370416633	41.626	6.1897	41.626	40.795	46.985	0					363	141	3	0	0	0	0.58067	1	2740	2740		44.377	1.981	1	1452500			37322	7644	30785	30810	40719	40719					-0.034859307365422865
LYPEPVRV	8	Unmodified	_LYPEPVRV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.P12974Lfs*4|1|0.05|ENSG00000155657|chr2:178631204-178631205|-/GTACA|frameshift_variant;TTN|p.E11597Rfs*5|1|0.5|ENSG00000155657|chr2:178651954-178651954|A/-|frameshift_variant;TTN|p.R11195Efs*5|1|0.15|ENSG00000155657|chr2:178674318-178674318|A/-|frameshift_variant;TTN|p.E9011Nfs*14|1|0.03|ENSG00000155657|chr2:178711255-178711255|T/-|frameshift_variant;TTN|p.G8550Tfs*3|1|0.05|ENSG00000155657|chr2:178714032-178714059|ATTTGTTGTCACTTGTTAGCTCTTTTCC/-|frameshift_variant;TTN|p.S7694Qfs*32|1|0.04|ENSG00000155657|chr2:178719360-178719360|G/-|frameshift_variant;TTN|p.C7689Pfs*18|1|0.03|ENSG00000155657|chr2:178719373-178719374|CA/-|frameshift_variant;TTN|p.L7641Yfs*6|1|0.07|ENSG00000155657|chr2:178719621-178719621|T/-|frameshift_variant;TTN|p.T6904Lfs*6|1|0.08|ENSG00000155657|chr2:178723439-178723439|T/-|frameshift_variant;TTN|p.V5150Afs*3|1|0.06|ENSG00000155657|chr2:178732661-178732661|A/-|frameshift_variant;TTN|p.R4157*|1|0.07|ENSG00000155657|chr2:178739814-178739815|-/C|frameshift_variant;TTN|p.E3802Dfs*59|1|0.05|ENSG00000155657|chr2:178740876-178740877|-/GAAGTAACAAGGTACATGCACATGATGTG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN;TTN|p.L3483Ifs*33|1|0.11|ENSG00000155657|chr2:178741835-178741836|-/AT|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OvCa99_classI_Rep5	1	486.780029296875	2	486.779285	971.544017	2.1455	0.0010444	0.1195	5.8172E-05	2.265	0.0011026	486.7791659805721	121.92	1.0627	121.92	121.57	122.63	0					46	22	3	0	0	0	0.61758	1	14042	14042		60.294	1.512	1	832560			37323	5793;36288	30786	30811	40720	40720					0.057106617941940385
LYPGGGHI	8	Unmodified	_LYPGGGHI_					0	0	0			REV__ENST00000429683.1_1_22:32021901-32028265:-|nuORF	REV__ENST00000429683.1_1_22:32021901-32028265:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	407.21783447265625	2	407.216321	812.418088	0.80434	0.00032754	-0.39358	-0.00016027	0.41075	0.00016727	407.2160301534717	55.895	1.021	55.895	55.641	56.662	0					51	24	4	0	0	0	0.7363	1	4622	4622		33.493	6.6969	1	5433100	+		37324	25703	30787	30812	40721	40721					0.00437575008766089
LYPGGPVRTF	10	Unmodified	_LYPGGPVRTF_					0	0	0			REV__HSPG2|p.R2480Gfs*14|1|0.14|ENSG00000142798|chr1:21850049-21850049|G/-|frameshift_variant	REV__HSPG2|p.R2480Gfs*14|1|0.14|ENSG00000142798|chr1:21850049-21850049|G/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.3046875	2	553.803291	1105.59203	-0.14121	-7.8205E-05	0.045599	2.5253E-05	-0.095615	-5.2952E-05	554.3042378811962	51.441	0.45978	51.441	51.248	51.708	0					30	10	4	0	0	0	0.026681	1	3968	3968		36.447	0	1	969620	+		37325	19807	30788	30813	40722	40722					0.0434573571421879
LYPGLRGSP	9	Unmodified	_LYPGLRGSP_					0	0	0		OVGP1|p.G202Efs*13|1|0.03|ENSG00000085465|chr1:111422930-111422931|-/T|frameshift_variant;OVGP1|p.K271Qfs*4|1|0.41|ENSG00000085465|chr1:111421369-111421370|-/A|frameshift_variant;ENSG00000085465|ENST00000369732|OVGP1	OVGP1|p.G202Efs*13|1|0.03|ENSG00000085465|chr1:111422930-111422931|-/T|frameshift_variant	OVGP1|p.G202Efs*13|1|0.03|ENSG00000085465|chr1:111422930-111422931|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	480.2922058105469	2	480.269084	958.523616	1.1449	0.00054984	-1.2741	-0.0006119	-0.1292	-6.2052E-05	480.2684262904826	91.072	1.7044	89.837	89.094	90.799	-1.2355					62	32	3	0	0	0	0.027462	1	8010	8010		53.351	14.545	1	71342			37326	1731	30789	30814	40723	40723					0.04269491134380132
LYPGWNMEK	9	Unmodified	_LYPGWNMEK_					0	0	0		ENSG00000072657|ENST00000261180|TRHDE	ENSG00000072657|ENST00000261180|TRHDE	ENSG00000072657|ENST00000261180|TRHDE	MULTI-MSMS	OvCa99_classI_Rep5	1	569.2738647460938	2	569.273509	1136.53247	2.1279	0.0012114	-2.3525	-0.0013392	-0.22456	-0.00012784	569.2720335480063	118	0.7878	118	117.65	118.44	0					33	14	3	0	0	0	0.48324	1	13537	13537		44.117	1.6423	1	397800			37327	1476	30790	30815	40724	40724					-0.03033903291475326
LYPHLPPE	8	Unmodified	_LYPHLPPE_					0	0	0		nc|ENSG00000161011|Q13501-2|SQSTM1;ENSG00000161011|ENST00000389805|SQSTM1	nc|ENSG00000161011|Q13501-2|SQSTM1	nc|ENSG00000161011|Q13501-2|SQSTM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.7923278808594	2	483.258185	964.501818	-0.16244	-7.8499E-05	-3.6126	-0.0017458	-3.7751	-0.0018243	483.25617716733404	51.086	0.55505	51.086	50.819	51.374	0					19	12	2	0	0	0	0.028476	1	3949	3949		26.796	4.8362	1	195600			37328	6114	30791	30816	40725	40725					0.018146863858078177
LYPIKPNN	8	Unmodified	_LYPIKPNN_					0	0	0			REV__tr|A0A553SSQ9|A0A553SSQ9_NIACIMalonylCoA-acylcarrierproteintransacylaseOS=NialliacirculansOX=1397GN=CEQ21_03555PE=3SV=1	REV__tr|A0A553SSQ9|A0A553SSQ9_NIACIMalonylCoA-acylcarrierproteintransacylaseOS=NialliacirculansOX=1397GN=CEQ21_03555PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.7681579589844	2	479.77146	957.528367	-0.49935	-0.00023957	-3.4907	-0.0016748	-3.9901	-0.0019143	479.76956680930647	33.818	0.33627	33.818	33.681	34.017	0					9	6	2	0	0	0	0.028476	1	1592	1592		18.324	0.95945	1	44456	+		37329	30867	30792	30817	40726	40726					0.04790375277127623
LYPKRLNGM	9	Unmodified	_LYPKRLNGM_					0	0	0			REV__ENST00000358625.3_1_9:137006667-137007086:+|nuORF	REV__ENST00000358625.3_1_9:137006667-137007086:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.782958984375	2	546.305144	1090.59573	3.6025	0.0019681	1.4929	0.00081559	5.0954	0.0027837	546.3057523406522	132.18	0.65878	130.68	130.48	131.14	-1.5015					22	12	3	0	0	0	0.027462	1	12728	12728		40.573	13.88	1	22854	+		37330	24803	30793	30818	40727	40727					0.05406082216450159
LYPLHITAL	9	Unmodified	_LYPLHITAL_					0	0	0			REV__ENST00000480730.5_1_6:33272736-33281818:-|nuORF	REV__ENST00000480730.5_1_6:33272736-33281818:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	521.3135375976562	2	520.810585	1039.60662	0.37393	0.00019475	2.1953	0.0011433	2.5693	0.0013381	520.8116311629591	153.38	1.4209	153.38	152.75	154.17	0					47	28	3	0	0	0	0.58665	1	18031	18031		33.516	3.674	1	377760	+		37331	16076	30794	30819	40728	40728					0.08839807862364069
LYPLITCL	8	Carbamidomethyl (C)	_LYPLITC(Carbamidomethyl (C))L_	LYPLITC(1)L		LYPLITC(45)L		0	1	0		ENSG00000075539|ENST00000358350|FRYL;FRYL|p.G1301Wfs*31|1|0.18|ENSG00000075539|chr4:48557678-48557679|-/T|frameshift_variant	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MSMS	OvCa99_classI_Rep5	1	496.77618408203125	2	496.777896	991.54124	NaN	NaN	NaN	NaN	NaN	NaN	NaN	157.57	1	157.57	157.07	158.07	0								0	0	0	0.30129	1	18467	18467		44.531	9.3304	1				37332	1535	30795	30820	40729	40729	10				0.04513070345012693
LYPLTNYTF	9	Unmodified	_LYPLTNYTF_					0	0	0		ENST00000567110.1_1_16:56481699-56485159:-|nuORF;ENSG00000167005|ENST00000300291|NUDT21	ENST00000567110.1_1_16:56481699-56485159:-|nuORF	ENST00000567110.1_1_16:56481699-56485159:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	566.2908325195312	2	566.289682	1130.56481	2.1856	0.0012377	-0.2087	-0.00011818	1.9769	0.0011195	566.2895202255991	137.76	1.8199	137.76	137.3	139.12	0					87	38	3	0	0	0	0.0078056	7	16049	16027;16049;16073;16095;16121;16132;16201		214.25	89.512	1	3746300			37333	6747	30796	30821	40730;40731;40732;40733;40734;40735;40736	40731					0.00475207383169618
LYPPPPPPQ	9	Unmodified	_LYPPPPPPQ_					0	0	0		ENSG00000152822|ENST00000282753|GRM1;ENST00000507907.1_1_6:146747775-146755929:+|nuORF;ENST00000492807.6_1_6:146720717-146755929:+|nuORF	ENSG00000152822|ENST00000282753|GRM1	ENSG00000152822|ENST00000282753|GRM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.259765625	2	503.273835	1004.53312	-0.24908	-0.00012536	-1.7573	-0.0008844	-2.0064	-0.0010098	503.2717746650972	69.46	0.48721	69.46	69.184	69.672	0					15	11	2	0	0	0	0.027462	1	6617	6617		24.203	0	1	169570			37334	5648	30797	30822	40737	40737					0.031032594199018604
LYPQFMFHL	9	Oxidation (M)	_LYPQFM(Oxidation (M))FHL_		LYPQFM(1)FHL		LYPQFM(63)FHL	0	0	1		ENSG00000101310|ENST00000650089|SEC23B;SEC23B|p.N596Lfs*20|1|0.21|ENSG00000101310|chr20:18548647-18548648|-/TT|frameshift_variant;nc|ENSG00000100934|Q15436-2|SEC23A;ENSG00000100934|ENST00000307712|SEC23A	ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	OvCa99_classI_Rep5	1	606.3012084960938	2	606.299527	1210.5845	2.0541	0.0012454	-0.39298	-0.00023826	1.6611	0.0010071	606.2991517937758	129.14	0.88528	129.14	128.7	129.59	0					57	18	5	0	0	0	0.30002	1	14958	14958		62.978	15.063	1	1342300			37335	2163;2123	30798	30823	40738	40738		75			-0.012367398777087146
LYPQFMFHL	9	Oxidation (M)	_LYPQFM(Oxidation (M))FHL_		LYPQFM(1)FHL		LYPQFM(58)FHL	0	0	1		ENSG00000101310|ENST00000650089|SEC23B;SEC23B|p.N596Lfs*20|1|0.21|ENSG00000101310|chr20:18548647-18548648|-/TT|frameshift_variant;nc|ENSG00000100934|Q15436-2|SEC23A;ENSG00000100934|ENST00000307712|SEC23A	ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	OvCa99_classI_Rep5	1	606.29931640625	2	606.299527	1210.5845	1.5729	0.00095366	0.30704	0.00018616	1.88	0.0011398	606.2996215879486	130.08	3.6751	130.08	129.54	133.22	0					138	77	2	0	0	0	0.34496	1	15142	15142		57.811	9.8518	1	485860			37336	2163;2123	30798	30823	40739	40739		75			-0.012367398777087146
LYPQFMFHL	9	Unmodified	_LYPQFMFHL_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B;SEC23B|p.N596Lfs*20|1|0.21|ENSG00000101310|chr20:18548647-18548648|-/TT|frameshift_variant;nc|ENSG00000100934|Q15436-2|SEC23A;ENSG00000100934|ENST00000307712|SEC23A	ENSG00000101310|ENST00000650089|SEC23B;ENSG00000100934|ENST00000307712|SEC23A	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	OvCa99_classI_Rep5	1	598.3035888671875	2	598.30207	1194.58959	1.4272	0.00085387	0.14366	8.5954E-05	1.5708	0.00093983	598.3023515936841	138.71	4.6221	138.71	138.11	142.73	0					243	94	6	0	0	0	0.085069	3	16191	16167;16191;16215		101.21	33.939	1	17512000			37337	2163;2123	30798	30824	40740;40741;40742	40741					7.563984922853706E-05
LYPQLSSVHQ	10	Unmodified	_LYPQLSSVHQ_					0	0	0		DENND4C|p.S1184Afs*8|1|0.04|ENSG00000137145|chr9:19346465-19346466|-/GCCA|frameshift_variant;DENND4C|p.S1183Rfs*22|1|0.06|ENSG00000137145|chr9:19346464-19346465|-/GGAGCAGA|frameshift_variant;nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF	DENND4C|p.S1184Afs*8|1|0.04|ENSG00000137145|chr9:19346465-19346466|-/GCCA|frameshift_variant	DENND4C|p.S1184Afs*8|1|0.04|ENSG00000137145|chr9:19346465-19346466|-/GCCA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	586.3126220703125	2	586.308938	1170.60332	2.8797	0.0016884	3.2671	0.0019155	6.1467	0.0036039	586.3107516361531	26.153	0.76175	23.443	23.311	24.073	-2.7097					35	18	3	0	0	0	0.55359	1	343	343		47.657	1.2006	1	95087			37338	729	30799	30825	40743	40743					0.024845130177027386
LYPRDLWNF	9	Unmodified	_LYPRDLWNF_					0	0	0		ENST00000565833.1_1_17:62965520-62968715:-|nuORF;ENST00000430983.5_1_17:62964482-62968772:-|nuORF	ENST00000565833.1_1_17:62965520-62968715:-|nuORF	ENST00000565833.1_1_17:62965520-62968715:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	612.315673828125	2	612.314023	1222.61349	2.0598	0.0012612	-0.11109	-6.8024E-05	1.9487	0.0011932	612.3137814782118	128.73	2.1086	128.73	128.14	130.25	0					106	44	3	0	0	0	0.26538	3	14959	14886;14908;14959		69.628	25.097	1	951440			37339	11794	30800	30826	40744;40745;40746	40746					0.011091207429444694
LYPRDSWNF	9	Unmodified	_LYPRDSWNF_					0	0	0		ENST00000578175.5_1_17:66246915-66252971:+|nuORF;ENST00000585050.5_1_17:66245218-66252971:+|nuORF;ENST00000584350.1_1_17:66246608-66253107:+|nuORF;nc|ENSG00000196704|Q86W34-5|AMZ2;ENSG00000196704|ENST00000359904|AMZ2	ENST00000578175.5_1_17:66246915-66252971:+|nuORF	ENST00000578175.5_1_17:66246915-66252971:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	599.290771484375	2	599.288005	1196.56146	2.8608	0.0017144	-0.47768	-0.00028627	2.3831	0.0014282	599.2875432805653	102.34	0.76725	102.34	101.82	102.59	0					45	17	3	0	0	0	0.2784	1	11407	11407		65.465	19.493	1	1392700			37340	8643	30801	30827	40747	40747					-0.02896042670818133
LYPRLYPEL	9	Unmodified	_LYPRLYPEL_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000522843.5_1_8:59477592-59488665:+|nuORF;ENST00000519115.5_1_8:59477592-59490768:+|nuORF	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	OvCa99_classI_Rep5	1	582.32763671875	2	582.326599	1162.63865	1.0517	0.00061244	0.65959	0.0003841	1.7113	0.00099654	582.326925454606	111.86	0.73483	111.86	111.51	112.25	0					38	15	4	0	0	0	0.24951	1	12720	12720		68.787	12.066	1	433800			37341	4601	30802	30828	40748	40748					0.06383175545511222
LYPRLYPEL	9	Unmodified	_LYPRLYPEL_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000522843.5_1_8:59477592-59488665:+|nuORF;ENST00000519115.5_1_8:59477592-59490768:+|nuORF	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	582.326599	1162.63865	0.2462	0.00014337	-2.2401	-0.0013045	-1.9939	-0.0011611	582.3247140652791	111.98	1.1828	111.84	111.23	112.41	-0.13961	0.097704	-0.0023018	NaN	68.787	37	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36970			37342	4601	30802	30828							0.06383175545511222
LYPRLYPEL	9	Unmodified	_LYPRLYPEL_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000522843.5_1_8:59477592-59488665:+|nuORF;ENST00000519115.5_1_8:59477592-59490768:+|nuORF	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MATCH	OvCa9_classI_Rep3	3		2	582.326599	1162.63865	0.36452	0.00021227	-3.3471	-0.0019491	-2.9826	-0.0017369	582.323853155132	112.75	0.73701	111.67	111.32	112.05	-1.0753	-0.068752	-0.0035911	NaN	68.787	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44270			37343	4601	30802	30828							0.06383175545511222
LYPRLYPEL	9	Unmodified	_LYPRLYPEL_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000522843.5_1_8:59477592-59488665:+|nuORF;ENST00000519115.5_1_8:59477592-59490768:+|nuORF	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	582.326599	1162.63865	-0.36078	-0.00021009	-2.5557	-0.0014882	-2.9165	-0.0016983	582.3249404288641	113.05	0.9881	111.6	111.06	112.05	-1.4461	-0.14237	-0.0026693	NaN	68.787	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37455			37344	4601	30802	30828							0.06383175545511222
LYPRSKRPRP	10	Unmodified	_LYPRSKRPRP_					0	0	0			REV__ENST00000377320.3_1_1:9712717-9713065:-|nuORF	REV__ENST00000377320.3_1_1:9712717-9713065:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	423.9211730957031	3	423.922801	1268.74657	0.4048	0.00017161	-3.5984	-0.0015254	-3.1936	-0.0013538	423.92128381620927	43.861	1.6901	41.151	40.857	42.547	-2.7097					105	33	5	0	0	0	0.66944	2	2459	2459;2464		33.922	3.1998	1	640520	+		37345	25118	30803	30829	40749;40750	40749					0.1229498491945833
LYPSGNPSLPL	11	Unmodified	_LYPSGNPSLPL_					0	0	0		ENST00000552879.5_1_12:49494935-49496886:-|nuORF;ENST00000550867.5_1_12:49494935-49504419:-|nuORF	ENST00000552879.5_1_12:49494935-49496886:-|nuORF	ENST00000552879.5_1_12:49494935-49496886:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	579.311279296875	2	579.313689	1156.61282	-1.3424	-0.00077765	-2.7361	-0.001585	-4.0784	-0.0023627	579.3120320052601	99.586	2.05	97.901	97.474	99.524	-1.685					95	40	4	0	0	0	0.17933	1	6719	6719		82.75	0.50997	1	1018700			37346	13595	30804	30830	40751	40751					0.04078281303259246
LYPSIIQEF	9	Unmodified	_LYPSIIQEF_					0	0	0		POLA1-TSPAN7|1|fusion;nc|ENSG00000101868|P09884|POLA1;ENSG00000101868|ENST00000379068|POLA1	POLA1-TSPAN7|1|fusion	POLA1-TSPAN7|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	555.298583984375	2	555.297507	1108.58046	1.4162	0.0007864	0.45476	0.00025253	1.8709	0.0010389	555.2976715081353	143.83	1.8933	143.83	143.46	145.36	0					90	38	5	0	0	0	0.045281	2	16813	16813;16838		122.18	10.528	1	1703400			37347	15511	30805	30831	40752;40753	40752					0.030514939002614483
LYPVLTVHI	9	Unmodified	_LYPVLTVHI_					0	0	0			REV__tr|A0A7D6VQ66|A0A7D6VQ66_9CLOTCTPsynthaseOS=ClostridiumintestinaleOX=36845GN=pyrGPE=3SV=1	REV__tr|A0A7D6VQ66|A0A7D6VQ66_9CLOTCTPsynthaseOS=ClostridiumintestinaleOX=36845GN=pyrGPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	527.8171997070312	2	527.81841	1053.62227	-0.62231	-0.00032847	1.4033	0.00074071	0.78103	0.00041224	527.8186129379317	132.72	1.4756	131.6	131.24	132.71	-1.1249					60	29	3	0	0	0	0.58665	1	10638	10638		33.516	1.5607	1	124870	+		37348	31301	30806	30832	40754	40754					0.09760094379407747
LYPVLTVHI	9	Unmodified	_LYPVLTVHI_					0	0	0			REV__tr|A0A7D6VQ66|A0A7D6VQ66_9CLOTCTPsynthaseOS=ClostridiumintestinaleOX=36845GN=pyrGPE=3SV=1	REV__tr|A0A7D6VQ66|A0A7D6VQ66_9CLOTCTPsynthaseOS=ClostridiumintestinaleOX=36845GN=pyrGPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.8173828125	2	527.81841	1053.62227	2.908	0.0015349	-3.3438	-0.0017649	-0.43577	-0.00023001	527.8164130855859	133.06	2.3118	131.53	131.12	133.43	-1.5238					88	45	3	0	0	0	0.50066	1	12822	12822		42.474	0	1	542020	+		37349	31301	30806	30832	40755	40755					0.09760094379407747
LYQDGVFKF	9	Unmodified	_LYQDGVFKF_					0	0	0		ENSG00000166971|ENST00000394657|AKTIP;nc|ENSG00000166971|Q9H8T0-2|AKTIP;AKTIP|p.D159Efs*12|1|0.04|ENSG00000166971|chr16:53494539-53494543|TCACA/-|frameshift_variant;ENST00000514047.1_1_5:24170479-24171004:+|nuORF;ENST00000563108.5_1_16:53528870-53534189:-|nuORF	ENSG00000166971|ENST00000394657|AKTIP	ENSG00000166971|ENST00000394657|AKTIP	MULTI-MSMS	OvCa99_classI_Rep5	1	558.7909545898438	2	558.78985	1115.56515	1.8024	0.0010072	0.27625	0.00015437	2.0787	0.0011616	558.7899345419132	109.79	2.1844	109.79	109.24	111.42	0					137	48	5	0	0	0	0.0094273	2	12454	12424;12454		171.53	48.514	1	11203000			37350	6742	30807	30833	40756;40757	40757					0.011986271030536955
LYQDKFPFF	9	Unmodified	_LYQDKFPFF_					0	0	0		SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant;ENSG00000144028|ENST00000323853|SNRNP200	SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	602.8074340820312	2	602.8055	1203.59645	1.6168	0.00097459	0.40002	0.00024113	2.0168	0.0012157	602.8056891258485	130.69	1.1903	130.69	130.34	131.53	0					80	24	5	0	0	0	0.033166	2	15177	15153;15177		132.76	58.503	1	1997900			37351	5119	30808	30834	40758;40759	40759					0.002792001371290098
LYQEVFGRL	9	Unmodified	_LYQEVFGRL_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-MSMS	OvCa99_classI_Rep5	1	562.81005859375	2	562.808574	1123.60259	2.2264	0.0012531	-0.71315	-0.00040137	1.5133	0.0008517	562.8080824472421	105.95	0.57012	105.95	105.75	106.32	0					33	12	5	0	0	0	0.17606	2	11908	11908;11935		80.455	23.734	1	1570900			37352	1683	30809	30835	40760;40761	40760					0.04573718368669688
LYQFNPAFF	9	Unmodified	_LYQFNPAFF_					0	0	0		ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K	ENSG00000178982|ENST00000248342|EIF3K	ENSG00000178982|ENST00000248342|EIF3K	MULTI-MSMS	OvCa99_classI_Rep5	1	573.7866821289062	2	573.784567	1145.55458	0.729	0.00041829	0.37175	0.00021331	1.1008	0.00063159	573.7846199576873	151.18	1.1311	151.18	150.84	151.97	0					62	22	4	0	0	0	0.34496	1	17689	17689		57.811	11.839	1	995810			37353	7789	30810	30836	40762	40762					-0.012373555513931933
LYQGAPIRSLK	11	Unmodified	_LYQGAPIRSLK_					0	0	0			REV__ENST00000491568.6_1_X:100878151-100878310:+|nuORF	REV__ENST00000491568.6_1_X:100878151-100878310:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	415.91485595703125	3	415.915312	1244.72411	0.6515	0.00027097	-0.48268	-0.00020075	0.16882	7.0214E-05	415.9150652251347	64.562	1.6486	61.837	61.493	63.142	-2.7245					84	31	5	0	0	0	0.38584	1	4927	4927		62.166	5.5339	1	597120	+		37354	26677	30811	30837	40763	40763					0.11153340731175376
LYQGAPIRSLK	11	Unmodified	_LYQGAPIRSLK_					0	0	0			REV__ENST00000491568.6_1_X:100878151-100878310:+|nuORF	REV__ENST00000491568.6_1_X:100878151-100878310:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	415.915312	1244.72411	-0.50627	-0.00021056	-0.92054	-0.00038286	-1.4268	-0.00059343	415.91547917932894	65.453	1.5065	61.967	61.647	63.153	-3.4854	0.064994	-0.00053422	NaN	62.166	84	30	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	555220	+		37355	26677	30811	30837							0.11153340731175376
LYQGKKPDV	9	Unmodified	_LYQGKKPDV_					0	0	0		ENSG00000216490|ENST00000407280|IFI30;ENST00000600463.1_1_19:18288394-18288718:+|nuORF	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.8096923828125	2	524.295299	1046.57605	2.0182	0.0010581	-0.21386	-0.00011213	1.8043	0.00094599	524.2949983227306	74.984	0.48939	74.984	74.802	75.292	0					18	11	2	0	0	0	0.027462	1	7482	7482		30.504	12.179	1	338920			37356	9213	30812	30838	40764	40764					0.054620294773030764
LYQHEINLF	9	Unmodified	_LYQHEINLF_					0	0	0		ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	ENSG00000115816|ENST00000234170|CEBPZ	MULTI-MSMS	OvCa99_classI_Rep5	1	588.8082885742188	2	588.806031	1175.59751	-0.048715	-2.8684E-05	0.50215	0.00029567	0.45343	0.00026698	588.8061071020772	105.16	1.1415	105.16	104.87	106.01	0					57	25	5	0	0	0	0.14855	2	11818	11795;11818		85.161	6.897	1	3078900			37357	3129	30813	30839	40765;40766	40766					0.016734145060127048
LYQHHRFVGE	10	Unmodified	_LYQHHRFVGE_					0	0	0			REV__ENST00000420915.1_1_X:26576018-26576444:+|nuORF	REV__ENST00000420915.1_1_X:26576018-26576444:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	643.8713989257812	2	643.325454	1284.63635	2.4058	0.0015477	-0.63237	-0.00040682	1.7734	0.0011409	643.8246135022401	110.47	0.31572	110.47	110.31	110.63	0					8	6	2	0	0	0	0.026968	1	12542	12542		36.447	14.761	1	68490	+		37358	25597	30814	30840	40767	40767					0.00542139860408497
LYQHNLRRIKQ	11	Unmodified	_LYQHNLRRIKQ_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	OvCa9_classI_Rep3	3	490.2878723144531	3	490.288031	1467.84226	0.56809	0.00027853	-1.8814	-0.00092245	-1.3134	-0.00064392	490.28704031816306	67.206	1.5588	64.319	63.78	65.338	-2.8873					80	30	4	0	0	0	0.72466	1	2827	2827		20.03	0.7678	1	189160			37359	6923	30815	30841	40768	40768					0.12705713039690636
LYQKDFLRI	9	Unmodified	_LYQKDFLRI_					0	0	0		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6;nc|ENSG00000139926|Q96NE9-3|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	MULTI-MSMS	OvCa99_classI_Rep5	1	598.344482421875	2	598.345323	1194.67609	3.0971	0.0018532	-1.0145	-0.000607	2.0827	0.0012462	598.3446102245597	89.576	0.74699	89.576	89.313	90.06	0					52	17	4	0	0	0	0.1149	1	9565	9565		93.143	21.848	1	5364300			37360	4811	30816	30842	40769	40769					0.08654266811140587
LYQKKLTE	8	Unmodified	_LYQKKLTE_					0	0	0		nc|ENSG00000168234|Q8N584-2|TTC39C;ENSG00000168234|ENST00000317571|TTC39C	nc|ENSG00000168234|Q8N584-2|TTC39C	nc|ENSG00000168234|Q8N584-2|TTC39C	MULTI-MSMS	OvCa99_classI_Rep5	1	511.7992248535156	2	511.797675	1021.5808	1.8777	0.00096099	1.5132	0.00077447	3.3909	0.0017355	511.79824065646653	79.552	1.8763	79.552	79.16	81.037	0					141	45	4	0	0	0	0.67745	1	8118	8118		47.916	0	1	3983800			37361	6882	30817	30843	40770	40770					0.07086913620094037
LYQKVSVWL	9	Unmodified	_LYQKVSVWL_					0	0	0		nc|ENSG00000167165|P19224-3|UGT1A6;ENSG00000167165|ENST00000305139|UGT1A6	nc|ENSG00000167165|P19224-3|UGT1A6	nc|ENSG00000167165|P19224-3|UGT1A6	MULTI-MSMS	OvCa99_classI_Rep5	1	568.3279418945312	2	568.329142	1134.64373	-0.66849	-0.00037992	-3.2615	-0.0018536	-3.93	-0.0022335	568.3271554394465	50.336	0.61227	50.336	50.073	50.685	0					31	13	3	0	0	0	0.18193	1	3821	3821		79.451	6.5718	1	798100			37362	6763	30818	30844	40771	40771					0.08179479408136103
LYQRAFQHL	9	Unmodified	_LYQRAFQHL_					0	0	0		PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant;PRKDC|p.P3973Afs*40|1|0.09|ENSG00000253729|chr8:47777811-47777812|-/C|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant	PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	588.3213500976562	2	588.31964	1174.62473	-1.0401	-0.00061194	0.23392	0.00013762	-0.80622	-0.00047432	588.3198754041225	65.686	1.7847	65.686	65.072	66.857	0					74	44	2	0	0	0	0.12365	2	6030	6030;6058		90.777	14.003	1	15991000			37363	9437	30819	30845	40772;40773	40772					0.0443994283707525
LYQRKLQAP	9	Unmodified	_LYQRKLQAP_					0	0	0		ENSG00000013523|ENST00000251089|ANGEL1	ENSG00000013523|ENST00000251089|ANGEL1	ENSG00000013523|ENST00000251089|ANGEL1	MULTI-MSMS	OvCa99_classI_Rep5	1	558.8301391601562	2	558.82984	1115.64513	-0.1228	-6.8627E-05	-0.373	-0.00020845	-0.49581	-0.00027707	558.8295260279332	44.506	1.0715	44.506	44.26	45.332	0					62	23	4	0	0	0	0.36502	1	3029	3029		55.504	2.1528	1	3136500			37364	988	30820	30846	40774	40774					0.09193113496917249
LYQRWERYRRE	11	Unmodified	_LYQRWERYRRE_					0	0	0		nc|ENSG00000010310|P48546-2|GIPR;nc|ENSG00000010310|P48546-3|GIPR;ENSG00000010310|ENST00000590918|GIPR	nc|ENSG00000010310|P48546-2|GIPR	nc|ENSG00000010310|P48546-2|GIPR	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.8108520507812	3	552.290212	1653.84881	-0.16275	-8.9885E-05	-3.7113	-0.0020497	-3.874	-0.0021396	552.2883309240783	33.154	0.39407	33.154	32.941	33.335	0					21	7	4	0	0	0	0.026551	1	1506	1506		3.4087	2.0868	1	89060			37365	942	30821	30847	40775	40775					0.0480360620040301
LYQSAKLYL	9	Unmodified	_LYQSAKLYL_					0	0	0		tr|A0A7D6ZWE6|A0A7D6ZWE6_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=HZF06_07575PE=4SV=1	tr|A0A7D6ZWE6|A0A7D6ZWE6_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=HZF06_07575PE=4SV=1	tr|A0A7D6ZWE6|A0A7D6ZWE6_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=HZF06_07575PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.8104858398438	2	549.813325	1097.6121	-1.4658	-0.00080592	1.4522	0.00079846	-0.013563	-7.4573E-06	549.8139391157771	127.11	1.6247	125.67	125.29	126.92	-1.4357					64	31	3	0	0	0	0.5811	1	12108	12108		34.173	2.2177	1	78823			37366	35839	30822	30848	40776	40776					0.06719486654174034
LYQSDILQT	9	Unmodified	_LYQSDILQT_					0	0	0		ENSG00000143994|ENST00000316470|ABHD1;nc|ENSG00000143994|Q96SE0-3|ABHD1;ENST00000489120.5_1_2:27346693-27351996:+|nuORF	ENSG00000143994|ENST00000316470|ABHD1	ENSG00000143994|ENST00000316470|ABHD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	539.7883911132812	2	540.782222	1079.54989	-0.31435	-0.00017	0.29751	0.00016089	-0.016845	-9.1093E-06	540.7822546541776	96.431	1.81	94.005	93.105	94.915	-2.4256					89	35	6	0	0	0	0.027462	1	8534	8534		51.335	12.529	1	309830			37367	5115	30823	30849	40777	40777					0.013297155152031337
LYQYRRHVIVW	11	Unmodified	_LYQYRRHVIVW_					0	0	0			REV__ENSG00000130158|ENST00000294618|DOCK6	REV__ENSG00000130158|ENST00000294618|DOCK6	MULTI-SECPEP	OvCa9_classI_Rep3	3	511.2879638671875	3	511.62101	1531.8412	-0.77613	-0.00039709	-0.53907	-0.0002758	-1.3152	-0.00067289	511.95505875501016	96.122	1.0578	94.293	93.978	95.036	-1.8286					34	20	2	0	0	0	0.02642	1	6269	6269		10.104	0	1	96283	+		37368	18923	30824	30850	40778	40778					0.09655498670781526
LYRALLLSN	9	Unmodified	_LYRALLLSN_					0	0	0			REV__nc|ENSG00000105339|A2RUS2-2|DENND3	REV__nc|ENSG00000105339|A2RUS2-2|DENND3	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8179321289062	2	531.818941	1061.62333	0.089047	4.7357E-05	-3.7428	-0.0019905	-3.6538	-0.0019431	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.56889	1	13508	13508		35.618	2.8059	1	263230	+		37369	17712	30825	30851	40779	40779					0.09498308748356976
LYRAQTAVL	9	Unmodified	_LYRAQTAVL_					0	0	0			REV__ENSG00000166866|ENST00000300119|MYO1A	REV__ENSG00000166866|ENST00000300119|MYO1A	MSMS	OvCa99_classI_Rep5	1	517.8040771484375	2	517.803291	1033.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.733	1	63.733	63.233	64.233	0								0	0	0	0.17002	1	5754	5754		51.193	5.2407	1		+		37370	21229	30826	30852	40780	40780					0.07657735714224145
LYRATGDPTL	10	Unmodified	_LYRATGDPTL_					0	0	0		nc|ENSG00000088298|Q9BV94-2|EDEM2;ENSG00000088298|ENST00000374492|EDEM2	nc|ENSG00000088298|Q9BV94-2|EDEM2	nc|ENSG00000088298|Q9BV94-2|EDEM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.8416137695312	2	553.795663	1105.57677	1.3226	0.00073244	0.58035	0.00032139	1.9029	0.0010538	553.7958433526791	74.696	0.80462	74.696	74.405	75.209	0					25	19	2	0	0	0	0.026543	1	7436	7436		104.06	24.606	1	1161800			37371	1787	30827	30853	40781	40781					0.028208241263882883
LYRAYVAFP	9	Unmodified	_LYRAYVAFP_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2;ENST00000496337.1_1_7:141870985-141908039:+|nuORF;nc|ENSG00000257335|O43451-1|MGAM;MGAM|p.P1829Sfs*7|1|0.02|ENSG00000257335|chr7:142103427-142103428|-/AG|frameshift_variant;ENSG00000257335|ENST00000475668|MGAM	ENSG00000257743|ENST00000477922|MGAM2;nc|ENSG00000257335|O43451-1|MGAM	ENSG00000257743|ENST00000477922|MGAM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7777709960938	2	550.300384	1098.58622	-0.13543	-7.4528E-05	-2.7969	-0.0015392	-2.9324	-0.0016137	550.2984430257972	62.209	0.5024	62.209	62.038	62.541	0					33	11	5	0	0	0	0.027417	1	5526	5526		65.803	16.362	1	1316200			37372	9475;9471	30828	30854	40782	40782					0.040866372025675446
LYRGLGATLL	10	Unmodified	_LYRGLGATLL_					0	0	0		ENSG00000182902|ENST00000327451|SLC25A18	ENSG00000182902|ENST00000327451|SLC25A18	ENSG00000182902|ENST00000327451|SLC25A18	MULTI-MSMS	OvCa9_classI_Rep3	3	538.827392578125	2	538.826766	1075.63898	-0.48403	-0.00026081	-0.63187	-0.00034047	-1.1159	-0.00060128	538.8264089521746	92.869	3.0409	90.907	90.606	93.647	-1.9617					158	60	5	0	0	0	0.41408	1	5995	5995		66.429	0	1	3810900			37373	8037	30829	30855	40783	40783					0.10418595265377917
LYRGWGGEP	9	Unmodified	_LYRGWGGEP_					0	0	0		ENST00000311234.8_1_13:52025275-52027034:-|nuORF	ENST00000311234.8_1_13:52025275-52027034:-|nuORF	ENST00000311234.8_1_13:52025275-52027034:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.7543334960938	2	517.756341	1033.49813	-1.2976	-0.00067184	-3.1789	-0.0016459	-4.4765	-0.0023177	517.7545356388162	100.05	2.0169	97.722	96.899	98.916	-2.3253					102	39	4	0	0	0	0.40667	1	8982	8982		51.335	2.1247	1	963830			37374	10296	30830	30856	40784	40784					-0.017279833880365914
LYRILPSV	8	Unmodified	_LYRILPSV_					0	0	0		ENSG00000113924|ENST00000283871|HGD;ENST00000466528.5_1_3:120389228-120400958:-|nuORF;ENST00000488183.5_1_3:120371481-120396801:-|nuORF	ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	MULTI-MSMS	OvCa9_classI_Rep2	2	480.79730224609375	2	480.797478	959.580402	-0.62495	-0.00030048	0.86212	0.0004145	0.23716	0.00011403	480.7976122112674	115	2.3234	114.88	114.5	116.83	-0.11777					104	46	4	0	0	0	0.56113	1	10973	10973		71.378	11.084	1	301760			37375	3002	30831	30857	40785	40785					0.0989953869089959
LYRILPSV	8	Unmodified	_LYRILPSV_					0	0	0		ENSG00000113924|ENST00000283871|HGD;ENST00000466528.5_1_3:120389228-120400958:-|nuORF;ENST00000488183.5_1_3:120371481-120396801:-|nuORF	ENSG00000113924|ENST00000283871|HGD	ENSG00000113924|ENST00000283871|HGD	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.79736328125	2	480.797478	959.580402	-0.10363	-4.9827E-05	-0.62992	-0.00030286	-0.73355	-0.00035269	480.79694462562895	116.33	2.3302	114.97	114.65	116.98	-1.3645					106	44	4	0	0	0	0.57734	1	10869	10869		68.787	10.005	1	303270			37376	3002	30831	30857	40786	40786					0.0989953869089959
LYRINDSI	8	Unmodified	_LYRINDSI_					0	0	0			REV__tr|A0A7D6VPA1|A0A7D6VPA1_9CLOTCobalaminB12-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17935PE=4SV=1	REV__tr|A0A7D6VPA1|A0A7D6VPA1_9CLOTCobalaminB12-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17935PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.2865295410156	2	497.271824	992.529095	1.1984	0.00059591	1.0228	0.00050863	2.2212	0.0011045	497.27227752936744	81.703	0.24362	81.703	81.532	81.776	0					12	5	3	0	0	0	0.028476	1	8418	8418		68.787	15.435	1	959180	+		37377	31237	30832	30858	40787	40787					0.032531699261767244
LYRINDSI	8	Unmodified	_LYRINDSI_					0	0	0			REV__tr|A0A7D6VPA1|A0A7D6VPA1_9CLOTCobalaminB12-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17935PE=4SV=1	REV__tr|A0A7D6VPA1|A0A7D6VPA1_9CLOTCobalaminB12-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17935PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	497.271824	992.529095	0.10852	5.3966E-05	-0.00059646	-2.966E-07	0.10793	5.367E-05	497.2718634775061	82.966	0.80989	81.367	81.063	81.872	-1.5988	-0.036766	-0.00075242	NaN	79.451	32	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61791	+		37378	31237	30832	30858							0.032531699261767244
LYRINDSI	8	Unmodified	_LYRINDSI_					0	0	0			REV__tr|A0A7D6VPA1|A0A7D6VPA1_9CLOTCobalaminB12-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17935PE=4SV=1	REV__tr|A0A7D6VPA1|A0A7D6VPA1_9CLOTCobalaminB12-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17935PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	497.271824	992.529095	-1.1881	-0.00059082	1.6101	0.00080067	0.422	0.00020985	497.27236078644466	83.5	0.77272	81.239	81.017	81.79	-2.261	-0.16493	0.00084951	NaN	79.451	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143700	+		37379	31237	30832	30858							0.032531699261767244
LYRINDSI	8	Unmodified	_LYRINDSI_					0	0	0			REV__tr|A0A7D6VPA1|A0A7D6VPA1_9CLOTCobalaminB12-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17935PE=4SV=1	REV__tr|A0A7D6VPA1|A0A7D6VPA1_9CLOTCobalaminB12-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17935PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	497.271824	992.529095	0.30006	0.00014921	0.82483	0.00041017	1.1249	0.00055937	497.2721011033122	83.969	0.89268	81.306	81.022	81.914	-2.6629	-0.097789	6.8502E-05	NaN	79.451	23	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104300	+		37380	31237	30832	30858							0.032531699261767244
LYRLDEKV	8	Unmodified	_LYRLDEKV_					0	0	0		tr|A0A7D6W168|A0A7D6W168_9CLOTFtsW/RodA/SpoVEfamilycellcycleproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02600PE=4SV=1	tr|A0A7D6W168|A0A7D6W168_9CLOTFtsW/RodA/SpoVEfamilycellcycleproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02600PE=4SV=1	tr|A0A7D6W168|A0A7D6W168_9CLOTFtsW/RodA/SpoVEfamilycellcycleproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02600PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.2006225585938	2	518.295299	1034.57605	1.008	0.00052243	0.056956	2.952E-05	1.0649	0.00055195	518.2948701858649	93.595	0.20567	93.595	93.508	93.714	0					7	4	2	0	0	0	0.028476	1	10153	10153		23.042	0	1	421240			37381	35401	30833	30859	40788	40788					0.06014029477319127
LYRLKFNEF	9	Unmodified	_LYRLKFNEF_					0	0	0		nc|ENSG00000188042|P56559|ARL4C;ENSG00000188042|ENST00000339728|ARL4C	nc|ENSG00000188042|P56559|ARL4C	nc|ENSG00000188042|P56559|ARL4C	MULTI-MSMS	OvCa99_classI_Rep5	1	615.3397216796875	2	615.337498	1228.66044	2.543	0.0015648	-0.57131	-0.00035155	1.9717	0.0012132	615.3370859030163	94.497	1.0201	94.497	94.264	95.284	0					58	23	4	0	0	0	0.059253	1	10283	10283		113.41	28.496	1	8051400			37382	8449	30834	30860	40789	40789					0.05525980294078181
LYRLKFNEF	9	Unmodified	_LYRLKFNEF_					0	0	0		nc|ENSG00000188042|P56559|ARL4C;ENSG00000188042|ENST00000339728|ARL4C	nc|ENSG00000188042|P56559|ARL4C	nc|ENSG00000188042|P56559|ARL4C	MULTI-MATCH	OvCa9_classI_Rep2	2		2	615.337498	1228.66044	-0.50933	-0.00031341	4.888	0.0030078	4.3787	0.0026944	615.3403461674158	95.916	0.94481	94.888	94.615	95.559	-1.0281	0.041944	0.0026659	NaN	113.41	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66489			37383	8449	30834	30860							0.05525980294078181
LYRLKFNEF	9	Unmodified	_LYRLKFNEF_					0	0	0		nc|ENSG00000188042|P56559|ARL4C;ENSG00000188042|ENST00000339728|ARL4C	nc|ENSG00000188042|P56559|ARL4C	nc|ENSG00000188042|P56559|ARL4C	MULTI-MATCH	OvCa9_classI_Rep3	3		2	615.337498	1228.66044	0.48911	0.00030097	4.2914	0.0026406	4.7805	0.0029416	615.3400167325593	96.81	0.82655	94.982	94.621	95.448	-1.8286	0.13535	0.0019316	NaN	113.41	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86240			37384	8449	30834	30860							0.05525980294078181
LYRLKFNEF	9	Unmodified	_LYRLKFNEF_					0	0	0		nc|ENSG00000188042|P56559|ARL4C;ENSG00000188042|ENST00000339728|ARL4C	nc|ENSG00000188042|P56559|ARL4C	nc|ENSG00000188042|P56559|ARL4C	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	615.337498	1228.66044	1.0918	0.00067182	3.3846	0.0020827	4.4764	0.0027545	615.3395522608433	97.397	0.85563	95.019	94.563	95.418	-2.3786	0.17208	0.00081564	NaN	113.41	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61876			37385	8449	30834	30860							0.05525980294078181
LYRLKQKM	8	Unmodified	_LYRLKQKM_					0	0	0		tr|A0A553SGZ2|A0A553SGZ2_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11845PE=4SV=1	tr|A0A553SGZ2|A0A553SGZ2_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11845PE=4SV=1	tr|A0A553SGZ2|A0A553SGZ2_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11845PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	540.3253173828125	2	540.323337	1078.63212	-0.7206	-0.00038936	4.0158	0.0021698	3.2952	0.0017804	540.3255079707574	28.515	0.5973	28.515	28.34	28.937	0					32	11	4	0	0	0	0.74971	1	936	936		26.796	1.222	1	638320			37386	33212	30835	30861	40790	40790					0.09594959113132973
LYRNLDGI	8	Unmodified	_LYRNLDGI_					0	0	0			REV__tr|A0A553SSW6|A0A553SSW6_NIACIHNHnucleasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03670PE=4SV=1	REV__tr|A0A553SSW6|A0A553SSW6_NIACIHNHnucleasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03670PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	482.265380859375	2	482.266542	962.51853	-0.80352	-0.00038751	0.84835	0.00040913	0.044827	2.1618E-05	482.26683044066414	75.481	2.445	73.627	72.231	74.676	-1.854					100	46	3	0	0	0	0.65062	1	6205	6205		53.351	3.9099	1	282650	+		37387	30889	30836	30862	40791	40791					0.03577187271753246
LYRPHLLYC	9	Unmodified	_LYRPHLLYC_					0	0	0		nc|ENSG00000164970|Q8IW50-7|FAM219A	nc|ENSG00000164970|Q8IW50-7|FAM219A	nc|ENSG00000164970|Q8IW50-7|FAM219A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	589.3417358398438	2	589.312969	1176.61138	-1.1071	-0.00065241	-0.0081408	-4.7975E-06	-1.1152	-0.00065721	589.312806468451	145.26	3.3964	143.82	142.73	146.12	-1.4357					153	65	3	0	0	0	0.027462	1	14231	14231		33.516	1.5607	1	38728			37388	15151	30837	30863	40792	40792					0.03014368733511219
LYRPTIYAEH	10	Unmodified	_LYRPTIYAEH_					0	0	0			REV__ENSG00000072195|ENST00000312358|SPEG	REV__ENSG00000072195|ENST00000312358|SPEG	MULTI-MSMS	OvCa9_classI_Rep4_	4	631.830078125	2	631.830037	1261.64552	1.1077	0.00069985	-1.3144	-0.00083047	-0.20673	-0.00013062	631.8291515503455	97.264	1.9616	94.885	94.418	96.38	-2.3786					111	38	4	0	0	0	0.28845	1	8595	8595		82.241	13.394	1	1062800	+		37389	16913	30838	30864	40793	40793					0.025164884261130283
LYRQSLPPL	9	Unmodified	_LYRQSLPPL_					0	0	0		nc|ENSG00000123094|Q8NHQ8-2|RASSF8;ENSG00000123094|ENST00000689635|RASSF8	nc|ENSG00000123094|Q8NHQ8-2|RASSF8	nc|ENSG00000123094|Q8NHQ8-2|RASSF8	MULTI-MSMS	OvCa99_classI_Rep5	1	543.8208618164062	2	543.818941	1085.62333	2.5145	0.0013675	0.22325	0.00012141	2.7378	0.0014889	543.8190835972541	94.486	1.0276	94.486	93.964	94.992	0					42	23	4	0	0	0	0.27546	1	10289	10289		65.803	5.6849	1	1961400			37390	3569	30839	30865	40794	40794					0.08394308748324875
LYRRGGRA	8	Unmodified	_LYRRGGRA_					0	0	0			REV__nc|ENSG00000133561|Q6P9H5-3|GIMAP6	REV__nc|ENSG00000133561|Q6P9H5-3|GIMAP6	MULTI-MSMS	OvCa99_classI_Rep5	1	474.7814025878906	2	474.777942	947.541332	2.7379	0.0012999	2.7957	0.0013273	5.5336	0.0026272	474.77895332999003	88.8	0.37115	88.8	88.551	88.922	0					13	8	2	0	0	0	0.57878	1	9452	9452		68.485	2.0554	1	440980	+		37391	28857	30840	30866	40795	40795					0.06546251179906903
LYRSDGLNSLT	11	Unmodified	_LYRSDGLNSLT_					0	0	0		tr|A0A7D7A357|A0A7D7A357_9CLOTTyrosine-proteinphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_22415PE=4SV=1	tr|A0A7D7A357|A0A7D7A357_9CLOTTyrosine-proteinphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_22415PE=4SV=1	tr|A0A7D7A357|A0A7D7A357_9CLOTTyrosine-proteinphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_22415PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	413.8955993652344	3	413.550698	1237.63027	0.46743	0.00019331	-1.0912	-0.00045128	-0.6238	-0.00025797	413.55015147289225	47.565	0.96248	44.458	43.875	44.838	-3.1077					30	18	2	0	0	0	0.025806	1	2505	2505		11.932	0	1	46701			37392	36104	30841	30867	40796	40796					0.020955768382464157
LYRTVVFL	8	Unmodified	_LYRTVVFL_					0	0	0			REV__nc|ENSG00000175697|Q8NFN8-2|GPR156	REV__nc|ENSG00000175697|Q8NFN8-2|GPR156	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.2781677246094	2	505.805303	1009.59605	2.2335	0.0011297	-4.3491	-0.0021998	-2.1156	-0.0010701	505.8029307187383	86.85	0.61976	86.85	86.637	87.257	0					18	14	2	0	0	0	0.028476	1	9214	9214		46.766	16.449	1	323140	+		37393	21909	30842	30868	40797	40797					0.09163825207951959
LYRVSKSY	8	Unmodified	_LYRVSKSY_					0	0	0		ENST00000548022.1_1_12:42717790-42719777:-|nuORF	ENST00000548022.1_1_12:42717790-42719777:-|nuORF	ENST00000548022.1_1_12:42717790-42719777:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	508.2798767089844	2	508.282192	1014.54983	-0.20618	-0.0001048	-3.9805	-0.0020232	-4.1867	-0.002128	508.2799030365451	45.056	1.2995	42.347	42	43.3	-2.7097					53	25	4	0	0	0	0.68714	1	2610	2610		45.952	1.8352	1	206910			37394	13555	30843	30869	40798	40798					0.04313760305853975
LYSAQNHSHR	10	Unmodified	_LYSAQNHSHR_					0	0	0		ENST00000554912.1_1_14:100762042-100762387:-|nuORF	ENST00000554912.1_1_14:100762042-100762387:-|nuORF	ENST00000554912.1_1_14:100762042-100762387:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.9158630371094	3	404.867132	1211.57957	1.3556	0.00054885	-2.2194	-0.00089857	-0.86381	-0.00034973	405.20046721059987	32.627	0.391	32.627	32.453	32.844	0					10	7	2	0	0	0	0.026674	1	1420	1420		47.96	23.728	1	17343			37395	13639	30844	30870	40799	40799					-0.017759076961056053
LYSCLMPLT	9	Unmodified	_LYSCLMPLT_					0	0	0			REV__nc|ENSG00000196218|P21817-3|RYR1	REV__nc|ENSG00000196218|P21817-3|RYR1	MULTI-MSMS	OvCa99_classI_Rep5	1	520.7603759765625	2	520.761389	1039.50822	0.42882	0.00022331	-1.5018	-0.00078208	-1.073	-0.00055877	520.7604458027894	157.19	1.0089	157.19	156.9	157.91	0					39	19	3	0	0	0	0.25214	1	18411	18411		68.485	5.1784	1	190970	+		37396	22801	30845	30871	40800	40800					-0.009948797693596134
LYSEFSQRW	9	Unmodified	_LYSEFSQRW_					0	0	0			REV__ENSG00000102786|ENST00000311234|INTS6	REV__ENSG00000102786|ENST00000311234|INTS6	MULTI-MSMS	OvCa9_classI_Rep3	3	608.29736328125	2	608.293288	1214.57202	3.6539	0.0022227	1.966	0.0011959	5.6199	0.0034186	608.2942855637167	59.026	3.3501	55.911	55.036	58.386	-3.1147					203	93	3	0	0	0	0.67509	1	1848	1848		23.042	0	1	283460	+		37397	17571	30846	30872	40801	40801					-0.026680600163899726
LYSEVDVHF	9	Unmodified	_LYSEVDVHF_					0	0	0		nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ;POGZ|p.F673*|1|0.43|ENSG00000143442|chr1:151408733-151408737|ACGGA/-|frameshift_variant	nc|ENSG00000143442|Q7Z3K3-5|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	MULTI-MSMS	OvCa99_classI_Rep5	1	554.771728515625	2	554.769114	1107.52368	2.5831	0.001433	-0.49796	-0.00027625	2.0852	0.0011568	554.7688297929411	102.53	2.7904	102.53	102.17	104.96	0					151	65	5	0	0	0	0.0073143	4	11484	11429;11452;11484;11528		211.23	123.54	1	11594000			37398	5055	30847	30873	40802;40803;40804;40805	40804					-0.025785536562807465
LYSFPVVIKNK	11	Unmodified	_LYSFPVVIKNK_					0	0	0		nc|ENSG00000014641|P40925-2|MDH1;ENSG00000014641|ENST00000233114|MDH1;nc|ENSG00000014641|P40925-3|MDH1	nc|ENSG00000014641|P40925-2|MDH1	nc|ENSG00000014641|P40925-2|MDH1	MULTI-SECPEP	OvCa99_classI_Rep5	1	436.2407531738281	3	436.595579	1306.76491	0.3892	0.00016992	-1.484	-0.0006479	-1.0948	-0.00047797	436.59487140343396	40.502	0.81184	40.502	40.247	41.059	0					27	17	2	0	0	0	0.025319	1	2486	2486		55.084	0.36156	1	270480			37399	999	30848	30874	40806	40806					0.12379682050777774
LYSFRKNR	8	Unmodified	_LYSFRKNR_					0	0	0			REV__ENST00000582491.5_1_17:43697732-43699336:+|nuORF	REV__ENST00000582491.5_1_17:43697732-43699336:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.2410278320312	2	542.306532	1082.59851	0.14943	8.1034E-05	-1.3133	-0.00071222	-1.1639	-0.00063118	542.30573888158	46.391	0.52226	46.391	46.154	46.676	0					18	11	2	0	0	0	0.028476	1	3281	3281		21.96	3.6978	1	230290	+		37400	27831	30849	30875	40807	40807					0.06051673665592716
LYSFVKLCIS	10	Unmodified	_LYSFVKLCIS_					0	0	0		ENST00000305366.7_1_3:149087371-149087659:-|nuORF	ENST00000305366.7_1_3:149087371-149087659:-|nuORF	ENST00000305366.7_1_3:149087371-149087659:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	587.3269653320312	2	586.822835	1171.63112	0.76579	0.00044939	2.7234	0.0015982	3.4892	0.0020475	586.8243055657107	153.39	2.2744	153.39	152.9	155.17	0					137	45	5	0	0	0	0.44722	1	18079	18079		61.691	8.7546	1	2850600			37401	10236	30850	30876	40808	40808					0.052166999535756986
LYSGRLQVRL	10	Unmodified	_LYSGRLQVRL_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4;ENST00000567704.5_1_15:78187063-78188741:+|nuORF	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.23468017578125	3	402.24354	1203.70879	0.80119	0.00032227	0.34705	0.0001396	1.1482	0.00046187	402.2437275907572	33.72	0.81854	33.72	33.533	34.351	0					31	16	3	0	0	0	0.026803	1	1602	1602		47.96	26.274	1	190750			37402	7388	30851	30877	40809	40809					0.11508473933986352
LYSGSKFR	8	Unmodified	_LYSGSKFR_					0	0	0		ENSG00000141034|ENST00000268719|GID4	ENSG00000141034|ENST00000268719|GID4	ENSG00000141034|ENST00000268719|GID4	MULTI-MSMS	OvCa99_classI_Rep5	1	479.2582702636719	2	479.261259	956.507966	-0.42666	-0.00020448	-3.9134	-0.0018755	-4.34	-0.00208	479.2592446047875	38.218	0.55192	38.218	38.024	38.576	0					22	11	3	0	0	0	0.64377	1	2166	2166		54.765	7.9982	1	354510			37403	4892	30852	30878	40810	40810					0.02797204617331772
LYSHLVDYF	9	Unmodified	_LYSHLVDYF_					0	0	0		ENSG00000088256|ENST00000078429|GNA11;ENST00000590534.1_1_19:3119101-3121174:+|nuORF;ENST00000586180.1_1_19:3118803-3121174:+|nuORF	ENSG00000088256|ENST00000078429|GNA11	ENSG00000088256|ENST00000078429|GNA11	MULTI-MSMS	OvCa99_classI_Rep5	1	578.7891845703125	2	578.787307	1155.56006	1.3182	0.00076293	0.72325	0.00041861	2.0414	0.0011815	578.7876690499771	115.28	1.0739	115.28	114.93	116	0					48	22	3	0	0	0	0.17908	2	13161	13161;13185		79.939	14.474	1	581130			37404	1785	30853	30879	40811;40812	40811					-0.01149676759587237
LYSIYFKTGPV	11	Unmodified	_LYSIYFKTGPV_					0	0	0			REV__ENSG00000110375|ENST00000264031|UPK2	REV__ENSG00000110375|ENST00000264031|UPK2	MULTI-MSMS	OvCa9_classI_Rep2	2	644.3491821289062	2	644.352814	1286.69108	-5.2956	-0.0034123	0.47634	0.00030693	-4.8193	-0.0031053	644.3530551515443	156.2	0.85168	155.97	155.64	156.49	-0.22696					67	24	4	0	0	0	0.72473	1	15924	15924		19.104	0	1	86486	+		37405	17980	30854	30880	40813	40813					0.05919713888465594
LYSKGKKTVV	10	Unmodified	_LYSKGKKTVV_					0	0	0			REV__nc|ENSG00000170324|Q68DX3-2|FRMPD2	REV__nc|ENSG00000170324|Q68DX3-2|FRMPD2	MULTI-MSMS	OvCa9_classI_Rep2	2	561.8450317382812	2	561.847699	1121.68084	-3.2197	-0.001809	-0.49496	-0.00027809	-3.7146	-0.002087	561.8472802195274	152.47	1.17	152.24	151.83	153	-0.22697					70	23	4	0	0	0	0.83261	1	15537	15537		14.865	0	1	142980	+		37406	21532	30855	30881	40814	40814					0.12487150953893433
LYSKIEALL	9	Unmodified	_LYSKIEALL_					0	0	0		ENST00000480292.5_1_3:158520095-158542024:+|nuORF;nc|ENSG00000118855|Q9H3U5-4|MFSD1;nc|ENSG00000118855|Q9H3U5-3|MFSD1;ENSG00000118855|ENST00000415822|MFSD1;nc|ENSG00000118855|Q9H3U5-5|MFSD1;nc|ENSG00000118855|Q9H3U5-6|MFSD1	ENST00000480292.5_1_3:158520095-158542024:+|nuORF	ENST00000480292.5_1_3:158520095-158542024:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	525.3156127929688	2	525.3157	1048.61685	1.1216	0.00058922	0.20118	0.00010568	1.3228	0.0006949	525.3158400193801	111.87	1.1871	111.87	111.47	112.66	0					68	25	4	0	0	0	0.083631	2	12713	12713;12737		101.6	11.231	1	997320			37407	3327	30856	30882	40815;40816	40815					0.09448370796940253
LYSKILGV	8	Unmodified	_LYSKILGV_					0	0	0		tr|A0A7D6ZYR3|A0A7D6ZYR3_9CLOTTransglutaminasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17350PE=4SV=1	tr|A0A7D6ZYR3|A0A7D6ZYR3_9CLOTTransglutaminasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17350PE=4SV=1	tr|A0A7D6ZYR3|A0A7D6ZYR3_9CLOTTransglutaminasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17350PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	446.7783508300781	2	446.778754	891.542954	0.32087	0.00014336	-3.3456	-0.0014947	-3.0247	-0.0013514	446.7771119594846	55.951	1.1024	55.951	55.559	56.662	0					57	26	4	0	0	0	0.67745	1	4625	4625		47.916	7.343	1	3029500			37408	35926	30857	30883	40817	40817					0.0928444742528427
LYSKSSFIL	9	Unmodified	_LYSKSSFIL_					0	0	0		nc|ENSG00000197415|Q14D04-2|VEPH1;ENSG00000197415|ENST00000362010|VEPH1	nc|ENSG00000197415|Q14D04-2|VEPH1	nc|ENSG00000197415|Q14D04-2|VEPH1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.795166015625	2	529.30005	1056.58555	-1.2833	-0.00067925	-0.35278	-0.00018673	-1.6361	-0.00086597	529.299880612675	104.29	1.3112	102.17	101.38	102.69	-2.1192					32	24	2	0	0	0	0.027462	1	9468	9468		55.504	0	1	106410			37409	8710	30858	30884	40818	40818					0.05951797762872957
LYSKSSFIL	9	Unmodified	_LYSKSSFIL_					0	0	0		nc|ENSG00000197415|Q14D04-2|VEPH1;ENSG00000197415|ENST00000362010|VEPH1	nc|ENSG00000197415|Q14D04-2|VEPH1	nc|ENSG00000197415|Q14D04-2|VEPH1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	529.30005	1056.58555	-1.5552	-0.00082314	-1.325	-0.00070132	-2.8801	-0.0015245	529.2991595673278	102.8	1.0848	102.12	101.64	102.72	-0.68459	-0.0059812	-0.00024709	NaN	55.504	45	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115050			37410	8710	30858	30884							0.05951797762872957
LYSKSSFIL	9	Unmodified	_LYSKSSFIL_					0	0	0		nc|ENSG00000197415|Q14D04-2|VEPH1;ENSG00000197415|ENST00000362010|VEPH1	nc|ENSG00000197415|Q14D04-2|VEPH1	nc|ENSG00000197415|Q14D04-2|VEPH1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	529.30005	1056.58555	-0.067932	-3.5956E-05	-1.2103	-0.00064059	-1.2782	-0.00067655	529.2983212148156	103.52	1.6244	102.08	101.24	102.86	-1.4347	-0.041477	-0.00012564	NaN	55.504	55	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121690			37411	8710	30858	30884							0.05951797762872957
LYSLFSVHSV	10	Unmodified	_LYSLFSVHSV_					0	0	0		ENST00000488642.6_1_12:1034631-1036165:-|nuORF;ENST00000228345.9_1_12:1034631-1039134:-|nuORF;nc|ENSG00000002016|P43351-2|RAD52	ENST00000488642.6_1_12:1034631-1036165:-|nuORF	ENST00000488642.6_1_12:1034631-1036165:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.3458862304688	2	576.308406	1150.60226	2.2379	0.0012897	2.8813	0.0016605	5.1191	0.0029502	576.308979245115	121.39	1.2979	121.39	120.78	122.08	0					40	28	2	0	0	0	0.026665	1	13983	13983		42.396	5.237	1	112480			37412	9709	30859	30885	40819	40819					0.03298298648792297
LYSLNSILC	9	Unmodified	_LYSLNSILC_					0	0	0		ENST00000576089.1_1_6:125581120-125581456:+|nuORF	ENST00000576089.1_1_6:125581120-125581456:+|nuORF	ENST00000576089.1_1_6:125581120-125581456:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	513.2686157226562	2	513.270435	1024.52632	1.2007	0.0006163	-4.3903	-0.0022534	-3.1896	-0.0016371	513.2682182928028	123.3	0.87712	123.3	123	123.87	0					35	18	4	0	0	0	0.22961	1	14219	14219		71.296	7.9894	1	265240			37413	13947	30860	30886	40820	40820					0.015035784770361715
LYSLWRTGL	9	Unmodified	_LYSLWRTGL_					0	0	0		ENST00000503808.5_1_4:57204874-57250274:-|nuORF	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	ENST00000503808.5_1_4:57204874-57250274:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	554.8111572265625	2	554.811116	1107.60768	1.5249	0.00084601	-2.6531	-0.001472	-1.1282	-0.00062595	554.8095365674662	81.71	0.64795	81.71	81.413	82.061	0					38	15	3	0	0	0	0.56889	1	8426	8426		35.618	0	1	2016900			37414	12867	30861	30887	40821	40821					0.05818022231278519
LYSNTGLLK	9	Unmodified	_LYSNTGLLK_					0	0	0			REV__tr|A0A7D6ZW98|A0A7D6ZW98_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16960PE=4SV=1	REV__tr|A0A7D6ZW98|A0A7D6ZW98_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16960PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.7906494140625	2	504.78985	1007.56515	-1.3667	-0.00068989	0.97009	0.00048969	-0.39658	-0.00020019	504.79021345345154	54.968	1.7279	51.721	51.439	53.167	-3.2474					87	33	4	0	0	0	0.18193	1	3435	3435		79.451	2.6769	1	1388400	+		37415	32278	30862	30888	40822	40822					0.061666271030503594
LYSNVERQVQ	10	Unmodified	_LYSNVERQVQ_					0	0	0			REV__GABRQ|p.T557Ifs*5|1|0.04|ENSG00000268089|chrX:152653051-152653052|-/T|frameshift_variant	REV__GABRQ|p.T557Ifs*5|1|0.04|ENSG00000268089|chrX:152653051-152653052|-/T|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	618.27197265625	2	618.322576	1234.6306	0.88923	0.00054983	1.6921	0.0010462	2.5813	0.0015961	618.3232678831953	139.3	0.82436	139.3	138.83	139.66	0					32	16	3	0	0	0	0.026826	1	16209	16209		36.447	3.6343	1	102070	+		37416	23594	30863	30889	40823	40823					0.02266996558091705
LYSPGLQQLA	10	Unmodified	_LYSPGLQQLA_					0	0	0		ENSG00000275342|ENST00000615670|PRAG1	ENSG00000275342|ENST00000615670|PRAG1	ENSG00000275342|ENST00000615670|PRAG1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.7714233398438	2	545.300581	1088.58661	-0.86074	-0.00046936	-0.073283	-3.9961E-05	-0.93402	-0.00050932	545.3028107400551	37.415	0.23308	37.415	37.298	37.531	0					8	4	3	0	0	0	0.026956	1	2047	2047		34.173	5.9183	1	35675			37417	9569	30864	30890	40824	40824					0.045860121317673475
LYSQKWELF	9	Unmodified	_LYSQKWELF_					0	0	0			REV__ENSG00000197140|ENST00000379907|ADAM32	REV__ENSG00000197140|ENST00000379907|ADAM32	MULTI-MSMS	OvCa99_classI_Rep5	1	607.31640625	2	607.316232	1212.61791	-0.2402	-0.00014588	-2.9777	-0.0018084	-3.2179	-0.0019543	607.3140276300027	63.729	0.59634	63.729	63.414	64.011	0					57	14	6	0	0	0	0.35444	1	5743	5743		31.955	0	1	2443500	+		37418	22896	30865	30891	40825	40825					0.020105851658399843
LYSRGVPAP	9	Unmodified	_LYSRGVPAP_					0	0	0		ENST00000484318.5_1_20:44985260-44987241:-|nuORF	ENST00000484318.5_1_20:44985260-44987241:-|nuORF	ENST00000484318.5_1_20:44985260-44987241:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	480.7498779296875	2	480.269084	958.523616	-1.2057	-0.00057907	-2.8975	-0.0013916	-4.1033	-0.0019707	480.2675819676918	49.612	1.0409	46.851	46.473	47.514	-2.7603					31	20	3	0	0	0	0.027462	1	3126	3126		38.806	14.603	1	46407			37419	12598	30866	30892	40826	40826					0.04269491134380132
LYSRTVLN	8	Unmodified	_LYSRTVLN_					0	0	0			REV__nc|ENSG00000160789|P02545-5|LMNA	REV__nc|ENSG00000160789|P02545-5|LMNA	MULTI-MSMS	OvCa99_classI_Rep5	1	483.2745666503906	2	483.274367	964.53418	2.8405	0.0013728	-1.4491	-0.00070032	1.3914	0.00067244	483.2735443089121	99.212	0.61076	99.212	98.877	99.488	0					40	14	4	0	0	0	0.62934	1	10982	10982		57.811	0	1	3792700	+		37420	20673	30867	30893	40827	40827					0.05049473788812975
LYSRVQATF	9	Unmodified	_LYSRVQATF_					0	0	0		nc|ENSG00000103264|Q5XUX0-2|FBXO31;ENSG00000103264|ENST00000311635|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	MULTI-MSMS	OvCa99_classI_Rep5	1	542.7931518554688	2	542.792924	1083.57129	1.7947	0.00097414	-1.0964	-0.00059512	0.69828	0.00037902	542.7926139840774	77.969	0.78408	77.969	77.714	78.498	0					58	18	5	0	0	0	0.075543	1	7873	7873		104.06	26.739	1	4593600			37421	2301	30868	30894	40828	40828					0.032851453345756454
LYSSDENH	8	Unmodified	_LYSSDENH_					0	0	0		tr|A0A553SR50|A0A553SR50_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00410PE=4SV=1	tr|A0A553SR50|A0A553SR50_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00410PE=4SV=1	tr|A0A553SR50|A0A553SR50_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00410PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.7325744628906	2	482.703971	963.393389	-0.25249	-0.00012188	-1.0299	-0.00049713	-1.2824	-0.00061901	482.7034237838206	35.822	0.23164	35.822	35.661	35.892	0					8	4	2	0	0	0	0.028476	1	1824	1824		38.806	24.142	1	39353			37422	34229	30869	30895	40829	40829					-0.08977149655277117
LYSSEKNIV	9	Unmodified	_LYSSEKNIV_					0	0	0		ENST00000310015.10_1_2:174774514-174774646:-|nuORF	ENST00000310015.10_1_2:174774514-174774646:-|nuORF	ENST00000310015.10_1_2:174774514-174774646:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.3163452148438	2	526.784764	1051.55498	-0.62714	-0.00033037	2.2235	0.0011713	1.5963	0.00084092	526.7854393030882	29.461	0.34889	29.461	29.337	29.686	0					10	6	2	0	0	0	0.027462	1	1055	1055		31.955	11.008	1	24016			37423	10281	30870	30896	40830	40830					0.03126019377805278
LYSSKLYRF	9	Unmodified	_LYSSKLYRF_					0	0	0		ENST00000474988.5_1_6:36410818-36454949:+|nuORF;nc|ENSG00000112078|Q7Z5Y7-2|KCTD20;nc|ENSG00000112078|Q7Z5Y7-3|KCTD20;ENSG00000112078|ENST00000373731|KCTD20	ENST00000474988.5_1_6:36410818-36454949:+|nuORF	ENST00000474988.5_1_6:36410818-36454949:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	588.8255004882812	2	588.824224	1175.63389	2.0513	0.0012079	0.2847	0.00016764	2.336	0.0013755	588.8241716484164	76.494	0.64459	76.494	76.238	76.882	0					39	15	3	0	0	0	0.010652	1	7664	7664		166.68	92.423	1	4618200			37424	2874	30871	30897	40831	40831					0.0531029140274768
LYSVLKVSF	9	Unmodified	_LYSVLKVSF_					0	0	0		tr|A0A7D7A1A2|A0A7D7A1A2_9CLOTIronABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23875PE=3SV=1	tr|A0A7D7A1A2|A0A7D7A1A2_9CLOTIronABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23875PE=3SV=1	tr|A0A7D7A1A2|A0A7D7A1A2_9CLOTIronABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23875PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.832763671875	2	528.310418	1054.60628	-0.14583	-7.7042E-05	-4.4153	-0.0023327	-4.5612	-0.0024097	528.307854944417	84.19	1.3762	81.527	81.118	82.494	-2.6629					56	28	3	0	0	0	0.027456	1	7024	7024		47.916	26.969	1	583500			37425	36032	30872	30898	40832	40832					0.08116388142502728
LYSVLLAGLI	10	Unmodified	_LYSVLLAGLI_					0	0	0			REV__ENSG00000116996|ENST00000366570|ZP4	REV__ENSG00000116996|ENST00000366570|ZP4	MULTI-MSMS	OvCa99_classI_Rep5	1	531.3351440429688	2	531.333893	1060.65323	1.5021	0.00079813	0.80548	0.00042798	2.3076	0.0012261	531.3342284690884	147.78	0.72409	147.78	147.5	148.23	0					31	14	3	0	0	0	0.52321	1	17282	17282		51.335	6.9583	1	170770	+		37426	18331	30873	30899	40833	40833					0.12533247693681915
LYSVPVGPPK	10	Unmodified	_LYSVPVGPPK_					0	0	0		tr|A0A553STI2|A0A553STI2_NIACI4-hydroxy-tetrahydrodipicolinatesynthaseOS=NialliacirculansOX=1397GN=dapAPE=3SV=1	tr|A0A553STI2|A0A553STI2_NIACI4-hydroxy-tetrahydrodipicolinatesynthaseOS=NialliacirculansOX=1397GN=dapAPE=3SV=1	tr|A0A553STI2|A0A553STI2_NIACI4-hydroxy-tetrahydrodipicolinatesynthaseOS=NialliacirculansOX=1397GN=dapAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.8071899414062	2	528.808042	1055.60153	-3.3346	-0.0017634	-1.9803	-0.0010472	-5.3149	-0.0028106	528.8069570782636	88.12	1.4508	85.517	85.129	86.58	-2.6027					60	28	3	0	0	0	0.55359	1	7520	7520		47.657	1.7054	1	510640			37427	34490	30874	30900	40834	40834					0.07595503999755238
LYSWTSTLV	9	Unmodified	_LYSWTSTLV_					0	0	0		ENST00000526488.5_1_11:3405399-3417049:+|nuORF	ENST00000526488.5_1_11:3405399-3417049:+|nuORF	ENST00000526488.5_1_11:3405399-3417049:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	535.3391723632812	2	535.281857	1068.54916	-1.4455	-0.00077373	-2.1064	-0.0011275	-3.5519	-0.0019013	535.2803342886613	47.265	1.0887	44.555	44.242	45.331	-2.7097					56	21	4	0	0	0	0.027462	1	2926	2926		31.955	5.2619	1	83100			37428	13218	30875	30901	40835	40835					0.01762920866121931
LYTAGYVK	8	Unmodified	_LYTAGYVK_					0	0	0			REV__NF1-RAB11FIP4|2|fusion;REV__NF1|p.M1949Ifs*2|1|0.67|ENSG00000196712|chr17:31334870-31334888|ATGACTCCATGGCTGTCAA/-|frameshift_variant	REV__NF1|p.M1949Ifs*2|1|0.67|ENSG00000196712|chr17:31334870-31334888|ATGACTCCATGGCTGTCAA/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	457.7701110839844	2	457.752736	913.490919	-0.584	-0.00026733	3.2376	0.001482	2.6536	0.0012147	457.7556202775769	79.978	0.3446	77.226	77.13	77.475	-2.7514					8	6	2	0	0	0	0.028476	1	6527	6527		40.573	0	1	11321	+		37429	22859;29248	30876	30902	40836	40836					0.030712840115256768
LYTEAIKFF	9	Unmodified	_LYTEAIKFF_					0	0	0		nc|ENSG00000038532|Q2KHT3-2|CLEC16A;CLEC16A|p.Q832Rfs*57|1|0.03|ENSG00000038532|chr16:11126000-11126000|A/-|frameshift_variant;ENSG00000038532|ENST00000409790|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	MULTI-MSMS	OvCa99_classI_Rep5	1	566.3093872070312	2	566.307875	1130.6012	1.1299	0.00063989	0.53286	0.00030176	1.6628	0.00094165	566.3080144452761	124.05	0.7736	124.05	123.79	124.56	0					37	16	3	0	0	0	0.026923	2	14325	14301;14325		138.83	64.57	1	772930			37430	14868	30877	30903	40837;40838	40838					0.04112084279881856
LYTEKFEEF	9	Unmodified	_LYTEKFEEF_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	OvCa99_classI_Rep5	1	603.291259765625	2	603.289879	1204.56521	2.664	0.0016072	-0.71057	-0.00042868	1.9534	0.0011785	603.2893533069754	96.482	1.827	96.482	96.168	97.995	0					121	42	5	0	0	0	0.00030724	4	10582	10552;10582;10613;10645		245.03	110.22	1	58981000			37431	1717	30878	30904	40839;40840;40841;40842	40840					-0.028894176876065103
LYTFTLIS	8	Unmodified	_LYTFTLIS_					0	0	0		nc|ENSG00000140465|P04798-2|CYP1A1;CYP1A1|p.A370Sfs*48|1|0.1|ENSG00000140465|chr15:74721257-74721258|-/T|frameshift_variant;ENSG00000140465|ENST00000379727|CYP1A1	nc|ENSG00000140465|P04798-2|CYP1A1	nc|ENSG00000140465|P04798-2|CYP1A1	MULTI-MSMS	OvCa99_classI_Rep5	1	479.2664794921875	2	479.268219	956.521884	0.51853	0.00024852	-0.42556	-0.00020396	0.092971	4.4558E-05	479.2680535387323	162.06	0.45811	162.06	161.87	162.33	0					14	8	2	0	0	0	0.73288	1	18998	18998		35.201	8.4046	1	58945			37432	701	30879	30905	40843	40843					0.0418843732577443
LYTGAEIY	8	Unmodified	_LYTGAEIY_					0	0	0			REV__tr|A0A7D6ZWR5|A0A7D6ZWR5_9CLOTMannose-1-phosphateguanylyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18965PE=4SV=1	REV__tr|A0A7D6ZWR5|A0A7D6ZWR5_9CLOTMannose-1-phosphateguanylyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18965PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	465.2357482910156	2	465.234376	928.454199	0.16838	7.8334E-05	-0.33704	-0.0001568	-0.16866	-7.8469E-05	465.2340987550715	64.881	0.88252	64.881	64.544	65.426	0					54	21	4	0	0	0	0.35894	1	5909	5909		96.048	2.8523	1	5299400	+		37433	32299	30880	30906	40844	40844					-0.012890126050592698
LYTKLMLLL	9	Unmodified	_LYTKLMLLL_					0	0	0			REV__ENST00000473914.1_1_5:96332105-96341995:+|nuORF	REV__ENST00000473914.1_1_5:96332105-96341995:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	555.3187866210938	2	554.345946	1106.67734	1.8197	0.0010087	-3.1063	-0.001722	-1.2867	-0.00071326	554.3442614674102	126.53	1.6301	126.53	126.18	127.81	0					97	35	5	0	0	0	0.44294	1	14602	14602		47.916	1.9636	1	5413700	+		37434	18151	30881	30907	40845	40845					0.12826764855662987
LYTRGLGK	8	Unmodified	_LYTRGLGK_					0	0	0		ENST00000512692.6_1_4:141206332-141290472:-|nuORF	ENST00000512692.6_1_4:141206332-141290472:-|nuORF	ENST00000512692.6_1_4:141206332-141290472:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	454.2494812011719	2	454.271627	906.528701	0.57634	0.00026181	-1.8578	-0.00084395	-1.2815	-0.00058214	454.27048103072946	56.491	0.75837	53.196	52.92	53.679	-3.2944					21	14	2	0	0	0	0.028476	1	3622	3622		79.451	50.301	1	29741			37435	12999	30882	30908	40846	40846					0.0716979499700301
LYTRGLGK	8	Unmodified	_LYTRGLGK_					0	0	0		ENST00000512692.6_1_4:141206332-141290472:-|nuORF	ENST00000512692.6_1_4:141206332-141290472:-|nuORF	ENST00000512692.6_1_4:141206332-141290472:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	454.271627	906.528701	0.68996	0.00031343	-1.4569	-0.00066185	-0.76698	-0.00034842	454.270618766512	55.972	0.49491	53.168	52.879	53.374	-2.804	-0.01422	0.0002522	NaN	79.451	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9275.7			37436	12999	30882	30908							0.0716979499700301
LYTSATPFKI	10	Unmodified	_LYTSATPFKI_					0	0	0			REV__nc|ENSG00000178177|Q8N3X6|LCORL	REV__nc|ENSG00000178177|Q8N3X6|LCORL	MULTI-MSMS	OvCa9_classI_Rep4_	4	570.8187255859375	2	570.818607	1139.62266	-1.8398	-0.0010502	1.5746	0.00089879	-0.26522	-0.00015139	570.8193122435389	125.61	1.4449	124.19	123.62	125.07	-1.4143					64	28	3	0	0	0	0.59703	1	11949	11949		42.396	0	1	97488	+		37437	29027	30883	30909	40847	40847					0.058434693086155676
LYTSSHNLL	9	Unmodified	_LYTSSHNLL_					0	0	0		tr|A0A553SM34|A0A553SM34_NIACIHADfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_21825PE=4SV=1	tr|A0A553SM34|A0A553SM34_NIACIHADfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_21825PE=4SV=1	tr|A0A553SM34|A0A553SM34_NIACIHADfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_21825PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	524.2785034179688	2	524.277106	1046.53966	1.2201	0.00063968	1.7979	0.0009426	3.018	0.0015823	524.2778574863617	62.52	2.1768	59.486	58.872	61.049	-3.0339					76	45	2	0	0	0	0.59259	1	2285	2285		32.812	0.85756	1	81064			37438	33794	30884	30910	40848	40848					0.01825152580613576
LYVARRGLW	9	Unmodified	_LYVARRGLW_					0	0	0		ENST00000513117.1_1_5:6633573-6668378:+|nuORF	ENST00000513117.1_1_5:6633573-6668378:+|nuORF	ENST00000513117.1_1_5:6633573-6668378:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3265380859375	2	567.33255	1132.65055	-0.48412	-0.00027465	-4.2812	-0.0024289	-4.7653	-0.0027035	567.3299446868054	145.54	4.8872	144.11	142.68	147.57	-1.4357					247	95	4	0	0	0	0.6926	1	14542	14542		20.482	0.48506	1	208760			37439	13004	30885	30911	40849	40849					0.08952837079368692
LYVFNLLN	8	Unmodified	_LYVFNLLN_					0	0	0			REV__tr|A0A7D7A5V4|A0A7D7A5V4_9CLOTEndosporegerminationpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07610PE=3SV=1	REV__tr|A0A7D7A5V4|A0A7D7A5V4_9CLOTEndosporegerminationpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07610PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.2814025878906	2	498.28166	994.548768	0.43376	0.00021614	-0.53163	-0.0002649	-0.097869	-4.8766E-05	498.28127650436284	131.63	1.4224	131.41	131	132.42	-0.22697					82	28	4	0	0	0	0.65582	1	12977	12977		52.299	2.2746	1	388250	+		37440	32644	30886	30912	40850	40850					0.05127545936943534
LYVFNLLN	8	Unmodified	_LYVFNLLN_					0	0	0			REV__tr|A0A7D7A5V4|A0A7D7A5V4_9CLOTEndosporegerminationpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07610PE=3SV=1	REV__tr|A0A7D7A5V4|A0A7D7A5V4_9CLOTEndosporegerminationpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07610PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.2815856933594	2	498.28166	994.548768	-0.41723	-0.0002079	0.29547	0.00014723	-0.12177	-6.0673E-05	498.2816571764264	132.68	1.1796	131.56	131.24	132.42	-1.1249					65	23	4	0	0	0	0.60486	1	10617	10617		62.978	0.87101	1	310840	+		37441	32644	30886	30912	40851	40851					0.05127545936943534
LYVFVCELDS	10	Unmodified	_LYVFVCELDS_					0	0	0		ENST00000558902.5_1_15:52548900-52571163:-|nuORF	ENST00000558902.5_1_15:52548900-52571163:-|nuORF	ENST00000558902.5_1_15:52548900-52571163:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	594.2922973632812	2	594.286282	1186.55801	2.619	0.0015564	-2.8665	-0.0017035	-0.24746	-0.00014706	594.2845540077992	96.506	0.49841	96.506	96.296	96.795	0					21	11	2	0	0	0	0.28791	1	10585	10585		82.305	21.333	1	1092300			37442	13707	30887	30913	40852	40852					-0.027804735596873797
LYVGGFAIYL	10	Unmodified	_LYVGGFAIYL_					0	0	0			REV__tr|A0A553SF14|A0A553SF14_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_08080PE=4SV=1	REV__tr|A0A553SF14|A0A553SF14_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_08080PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	558.2996826171875	2	558.310418	1114.60628	1.2739	0.00071123	3.742	0.0020892	5.0159	0.0028004	558.3123484274365	111.36	0.89531	109.85	109.63	110.53	-1.5111					33	16	3	0	0	0	0.026839	1	10246	10246		35.201	9.6267	1	44838	+		37443	29526	30888	30914	40853	40853					0.05356388142513424
LYVGTTRNSIL	11	Unmodified	_LYVGTTRNSIL_					0	0	0		ENSG00000125746|ENST00000245925|EML2;nc|ENSG00000125746|O95834-2|EML2;nc|ENSG00000125746|O95834-3|EML2;ENST00000588000.5_1_19:46124203-46142634:-|nuORF	ENSG00000125746|ENST00000245925|EML2	ENSG00000125746|ENST00000245925|EML2	MULTI-SECPEP	OvCa9_classI_Rep2	2	412.92669677734375	3	412.903072	1235.68739	-0.27574	-0.00011385	-2.1783	-0.00089944	-2.4541	-0.0010133	413.23616587344543	54.71	0.14994	51.897	51.822	51.972	-2.8139					6	2	3	0	0	0	0.025378	1	3772	3772		29.551	1.9068	1	10944			37444	3731	30889	30915	40854	40854					0.07897044114611163
LYVILNQK	8	Unmodified	_LYVILNQK_					0	0	0		ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000468078.1_1_7:6838857-6841171:-|nuORF;ENST00000474507.1_1_7:5959397-5965315:+|nuORF;ENST00000467004.5_1_7:6838857-6844768:-|nuORF	ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000146574|ENST00000316731|CCZ1B	MULTI-MSMS	OvCa9_classI_Rep2	2	495.8028259277344	2	495.80276	989.590967	-0.36128	-0.00017913	0.13174	6.5317E-05	-0.22954	-0.00011381	495.8026794771934	115.34	1.3349	115.23	114.95	116.28	-0.11777					56	26	3	0	0	0	0.68312	1	11009	11009		46.766	0	1	147130			37445	3546	30890	30916	40855	40855					0.09575521345323068
LYVLALHEV	9	Unmodified	_LYVLALHEV_					0	0	0		ENST00000506712.1_1_5:32710768-32783175:+|nuORF;nc|ENSG00000113389|P17342-3|NPR3;nc|ENSG00000113389|P17342-2|NPR3;ENSG00000113389|ENST00000265074|NPR3	ENST00000506712.1_1_5:32710768-32783175:+|nuORF	ENST00000506712.1_1_5:32710768-32783175:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.2871704101562	2	528.808042	1055.60153	-0.23018	-0.00012172	-3.226	-0.0017059	-3.4561	-0.0018276	528.806073943235	89.6	0.68894	87.025	86.559	87.248	-2.575					16	13	2	0	0	0	0.027462	1	7713	7713		31.955	0	1	32884			37446	2971	30891	30917	40856	40856					0.07595503999755238
LYVQSIAN	8	Unmodified	_LYVQSIAN_					0	0	0			REV__tr|A0A553SFV6|A0A553SFV6_NIACICoproporphyrinogenIIIoxidaseOS=NialliacirculansOX=1397GN=CEQ21_09620PE=4SV=1	REV__tr|A0A553SFV6|A0A553SFV6_NIACICoproporphyrinogenIIIoxidaseOS=NialliacirculansOX=1397GN=CEQ21_09620PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	454.2494812011719	2	454.247818	906.481082	0.58211	0.00026442	-0.0035289	-1.603E-06	0.57858	0.00026282	454.2475954309611	56.527	1.7768	53.233	52.819	54.596	-3.2944					87	34	4	0	0	0	0.40148	1	3622	3622		87.754	0	1	553480	+		37447	29627	30892	30918	40857	40857					0.024100960061332444
LYVQSIAN	8	Unmodified	_LYVQSIAN_					0	0	0			REV__tr|A0A553SFV6|A0A553SFV6_NIACICoproporphyrinogenIIIoxidaseOS=NialliacirculansOX=1397GN=CEQ21_09620PE=4SV=1	REV__tr|A0A553SFV6|A0A553SFV6_NIACICoproporphyrinogenIIIoxidaseOS=NialliacirculansOX=1397GN=CEQ21_09620PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	454.247818	906.481082	0.72209	0.00032801	0.20431	9.2808E-05	0.9264	0.00042081	454.24755122145365	56.197	1.585	53.393	52.681	54.266	-2.804	0.080206	0.00012054	NaN	87.754	70	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83938	+		37448	29627	30892	30918							0.024100960061332444
LYVQVKFVCI	10	Unmodified	_LYVQVKFVCI_					0	0	0		ENSG00000132801|ENST00000255152|ZSWIM3	ENSG00000132801|ENST00000255152|ZSWIM3	ENSG00000132801|ENST00000255152|ZSWIM3	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3471069335938	2	606.346477	1210.6784	0.43475	0.00026361	-1.1144	-0.00067571	-0.67964	-0.0004121	606.3456901284329	58.226	1.2551	54.881	54.596	55.852	-3.3449					78	24	5	0	0	0	0.65849	1	3839	3839		30.504	20.238	1	782000			37449	4175	30893	30919	40858	40858					0.08148979224597497
LYVRPSWLRLR	11	Unmodified	_LYVRPSWLRLR_					0	0	0		ENST00000470184.1_1_7:100179334-100179876:-|nuORF	ENST00000470184.1_1_7:100179334-100179876:-|nuORF	ENST00000470184.1_1_7:100179334-100179876:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	486.9573669433594	3	486.961256	1457.86194	-4.7825	-0.0023289	0.04792	2.3335E-05	-4.7346	-0.0023056	486.9610953135575	160.39	2.6298	160.16	159.25	161.88	-0.22696					128	53	4	0	0	0	0.72548	1	16286	16286		9.2118	1.5324	1	96650			37450	12358	30894	30920	40859	40859					0.1513208905043939
LYVRPSWLRLR	11	Unmodified	_LYVRPSWLRLR_					0	0	0		ENST00000470184.1_1_7:100179334-100179876:-|nuORF	ENST00000470184.1_1_7:100179334-100179876:-|nuORF	ENST00000470184.1_1_7:100179334-100179876:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	486.9584045410156	3	486.961256	1457.86194	-7.2825	-0.0035463	2.5142	0.0012243	-4.7683	-0.002322	486.9623381995862	161.08	3.4384	159.71	158.52	161.96	-1.3692					219	70	4	0	0	0	0.72538	2	14089	14081;14089		10.587	3.3253	1	133400			37451	12358	30894	30920	40860;40861	40861					0.1513208905043939
LYVSTEEPDM	10	Unmodified	_LYVSTEEPDM_					0	0	0			REV__ENSG00000154165|ENST00000284311|GPR15	REV__ENSG00000154165|ENST00000284311|GPR15	MULTI-MSMS	OvCa99_classI_Rep5	1	592.265869140625	2	592.263004	1182.51146	1.6702	0.00098921	-2.3402	-0.001386	-0.67001	-0.00039682	592.2609361037718	112.29	0.54803	112.29	112.06	112.61	0					16	11	2	0	0	0	0.52321	1	12791	12791		51.335	3.4199	1	420410	+		37452	20363	30895	30921	40862	40862					-0.07249958181637339
LYVVDLKKF	9	Unmodified	_LYVVDLKKF_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000136731|Q9NYU2-2|UGGT1;ENSG00000136731|ENST00000259253|UGGT1	ENSG00000102595|ENST00000376747|UGGT2;nc|ENSG00000136731|Q9NYU2-2|UGGT1	ENSG00000102595|ENST00000376747|UGGT2	MULTI-MSMS	OvCa99_classI_Rep5	1	562.8417358398438	2	562.839342	1123.66413	3.106	0.0017482	-1.3363	-0.00075214	1.7697	0.00099604	562.8385900951188	97.202	0.59996	97.202	96.966	97.566	0					23	13	2	0	0	0	0.17606	1	10670	10670		80.455	19.483	1	1024100			37453	2246;4509	30896	30922	40863	40863					0.10724650067936636
LYVVHPYVQ	9	Unmodified	_LYVVHPYVQ_					0	0	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.2831420898438	2	559.305667	1116.59678	2.5462	0.0014241	1.799	0.0010062	4.3452	0.0024303	559.3065436225133	113.68	0.33646	113.68	113.5	113.83	0					11	7	2	0	0	0	0.027456	1	12980	12980		44.531	0	1	145660			37454	6836	30897	30923	40864	40864					0.04314619856995705
LYWCNVPS	8	Carbamidomethyl (C)	_LYWC(Carbamidomethyl (C))NVPS_	LYWC(1)NVPS		LYWC(63)NVPS		0	1	0			REV__ENSG00000196220|ENST00000383836|SRGAP3;REV__nc|ENSG00000196935|Q7Z6B7-2|SRGAP1;REV__SRGAP1|p.V1061Ffs*17|1|0.04|ENSG00000196935|chr12:64142593-64142594|-/CTTTGTAGGGACATGGATGAAAT|frameshift_variant	REV__nc|ENSG00000196935|Q7Z6B7-2|SRGAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	519.7415161132812	2	519.739302	1037.46405	-0.57085	-0.00029669	3.4081	0.0017713	2.8372	0.0014746	519.7410200103027	56.542	1.518	56.542	56.3	57.818	0					105	35	6	0	0	0	0.60486	1	4685	4685		62.978	10.679	1	18125000	+		37455	22877;29452;22802	30898	30924	40865	40865	268				-0.05318147871321344
LYWILKVA	8	Unmodified	_LYWILKVA_					0	0	0			REV__ENSG00000139304|ENST00000644991|PTPRQ	REV__ENSG00000139304|ENST00000644991|PTPRQ	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.7648010253906	2	503.310221	1004.60589	-0.85879	-0.00043224	-3.1313	-0.001576	-3.9901	-0.0020083	503.3083467883161	94.044	0.33022	91.536	91.393	91.723	-2.5072					8	6	2	0	0	0	0.028476	1	8247	8247		21.702	0	1	13545	+		37456	19602	30899	30925	40866	40866					0.10377013213326336
LYWISRKC	8	Unmodified	_LYWISRKC_					0	0	0			REV__tr|A0A7D6VRL4|A0A7D6VRL4_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12645PE=4SV=1	REV__tr|A0A7D6VRL4|A0A7D6VRL4_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12645PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	534.7869873046875	2	534.786587	1067.55862	1.5143	0.00080982	-3.6132	-0.0019323	-2.0989	-0.0011225	534.7844684596323	147.86	1.0706	147.86	147.55	148.62	0					59	21	4	0	0	0	0.75241	1	17288	17288		25.45	1.2474	1	726250	+		37457	31426	30900	30926	40867	40867					0.027544106706955063
LYWIVKKV	8	Unmodified	_LYWIVKKV_					0	0	0			REV__sp|P16772|UL130_HCMVAUncharacterizedproteinUL130OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL130PE=1SV=1	REV__sp|P16772|UL130_HCMVAUncharacterizedproteinUL130OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL130PE=1SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.8191528320312	2	524.83132	1047.64809	-0.80702	-0.00042355	-2.7622	-0.0014497	-3.5692	-0.0018732	524.8297707703312	94.618	0.85063	92.15	91.86	92.711	-2.4685					21	16	2	0	0	0	0.028476	1	8273	8273		28.254	0	1	23938	+		37458	29400	30901	30927	40868	40868					0.12616988621721248
LYWLGNGSF	9	Unmodified	_LYWLGNGSF_					0	0	0		nc|ENSG00000137496|O95998-4|IL18BP;ENSG00000137496|ENST00000393703|IL18BP	nc|ENSG00000137496|O95998-4|IL18BP	nc|ENSG00000137496|O95998-4|IL18BP	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.8311157226562	2	528.761092	1055.50763	-0.24659	-0.00013039	3.2176	0.0017014	2.971	0.001571	528.7635232457768	82.904	0.40461	81.305	81.01	81.415	-1.5988					12	7	2	0	0	0	0.027433	1	7055	7055		57.811	15.337	1	10066			37459	4590	30902	30928	40869	40869					-0.01790215102505499
LYWSHPRKF	9	Unmodified	_LYWSHPRKF_					0	0	0		ENST00000557367.2_1_14:50053001-50053064:-|nuORF;ENSG00000213741|ENST00000245458|RPS29;nc|ENSG00000213741|P62273-2|RPS29;ENST00000554075.1_1_14:50052568-50053064:-|nuORF	ENST00000557367.2_1_14:50053001-50053064:-|nuORF	ENST00000557367.2_1_14:50053001-50053064:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	617.3323974609375	2	617.330008	1232.64546	-0.67034	-0.00041382	0.48744	0.00030091	-0.1829	-0.00011291	617.3302136132538	59.751	1.4067	59.751	59.452	60.859	0					94	34	4	0	0	0	0.075543	2	5188	5160;5188		104.06	30.082	1	9531000			37460	9144	30903	30929	40870;40871	40871					0.03844533216738455
LYYDAIWHF	9	Unmodified	_LYYDAIWHF_					0	0	0		nc|ENSG00000165272|Q92482-2|AQP3;ENSG00000165272|ENST00000297991|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	nc|ENSG00000165272|Q92482-2|AQP3	MULTI-MSMS	OvCa99_classI_Rep5	1	614.297119140625	2	614.295299	1226.57605	1.2161	0.00074704	1.0704	0.00065756	2.2865	0.0014046	614.2958266765445	138.85	2.0931	138.85	138.45	140.54	0					102	43	4	0	0	0	0.071436	3	16216	16193;16216;16241		106.42	46.121	1	2298400			37461	6543	30904	30930	40872;40873;40874	40873					-0.02817970522687574
LYYFIRLPLSL	11	Unmodified	_LYYFIRLPLSL_					0	0	0			REV__ENSG00000147138|ENST00000645147|GPR174	REV__ENSG00000147138|ENST00000645147|GPR174	MULTI-MSMS	OvCa9_classI_Rep3	3	466.60723876953125	3	466.611229	1396.81186	-6.6027	-0.0030809	-0.40685	-0.00018984	-7.0095	-0.0032707	466.61096806232865	159.04	3.2002	157.77	156.69	159.89	-1.267					192	69	4	0	0	0	0.72477	1	13703	13703		18.531	4.445	1	106530	+		37462	20047	30905	30931	40875	40875					0.12932541601958292
LYYGPNIMTL	10	Unmodified	_LYYGPNIMTL_					0	0	0		nc|ENSG00000172594|Q92484-2|SMPDL3A;ENSG00000172594|ENST00000368440|SMPDL3A	nc|ENSG00000172594|Q92484-2|SMPDL3A	nc|ENSG00000172594|Q92484-2|SMPDL3A	MULTI-SECPEP	OvCa99_classI_Rep5	1	592.2813110351562	2	592.804642	1183.59473	2.3407	0.0013876	2.8416	0.0016845	5.1823	0.0030721	592.8057380816127	85.988	0.60104	85.988	85.83	86.431	0					21	14	2	0	0	0	0.026931	1	9107	9107		45.972	16.823	1	552680			37463	7307	30906	30932	40876	40876					0.010278230568701474
LYYLLENI	8	Unmodified	_LYYLLENI_					0	0	0		tr|A0A553SNS1|A0A553SNS1_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_24970PE=3SV=1	tr|A0A553SNS1|A0A553SNS1_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_24970PE=3SV=1	tr|A0A553SNS1|A0A553SNS1_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_24970PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.3057861328125	2	520.786776	1039.559	0.59602	0.0003104	-3.1281	-0.0016291	-2.5321	-0.0013187	520.7849252755739	155.37	1.6218	155.37	154.57	156.19	0					46	31	2	0	0	0	0.028476	1	18205	18205		82.305	7.7884	1	30133			37464	33952	30907	30933	40877	40877					0.04080108871517041
LYYLSMYS	8	Unmodified	_LYYLSMYS_					0	0	0			REV__tr|A0A553SP23|A0A553SP23_NIACIUPF0122proteinCEQ21_25635OS=NialliacirculansOX=1397GN=CEQ21_25635PE=3SV=1	REV__tr|A0A553SP23|A0A553SP23_NIACIUPF0122proteinCEQ21_25635OS=NialliacirculansOX=1397GN=CEQ21_25635PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.8222045898438	2	520.243886	1038.47322	1.1715	0.00060946	-2.3956	-0.0012463	-1.2241	-0.00063683	520.2428568759183	133.41	0.17984	133.41	133.26	133.44	0					5	3	2	0	0	0	0.028476	1	15518	15518		37.028	1.8278	1	39437	+		37465	30479	30908	30934	40878	40878					-0.04447799305648914
LYYQQAEN	8	Unmodified	_LYYQQAEN_					0	0	0			REV__nc|ENSG00000070182|P11277-3|SPTB	REV__nc|ENSG00000070182|P11277-3|SPTB	MULTI-SECPEP	OvCa9_classI_Rep3	3	514.3124389648438	2	514.737814	1027.46108	0.84002	0.00043239	-1.0765	-0.00055412	-0.23649	-0.00012173	514.7371484833898	105.52	0.93716	104.17	103.89	104.82	-1.3482					36	17	3	0	0	0	0.028476	1	7369	7369		35.201	8.4046	1	71123	+		37466	16878	30909	30935	40879	40879					-0.05155699724468832
LYYVLILL	8	Unmodified	_LYYVLILL_					0	0	0		tr|A0A7D6VPX7|A0A7D6VPX7_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18570PE=4SV=1	tr|A0A7D6VPX7|A0A7D6VPX7_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18570PE=4SV=1	tr|A0A7D6VPX7|A0A7D6VPX7_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18570PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.2776794433594	2	505.320254	1008.62596	2.349	0.001187	2.2857	0.001155	4.6346	0.002342	505.3210582985601	86.866	0.37592	86.866	86.72	87.096	0					11	8	3	0	0	0	0.028476	1	9184	9184		24.504	0	1	323520			37467	34806	30910	30936	40880	40880					0.12198764153299635
LYYYMTQT	8	Unmodified	_LYYYMTQT_					0	0	0		ENSG00000123213|ENST00000380985|NLN;ENST00000506539.5_1_5:65018131-65088776:+|nuORF	ENSG00000123213|ENST00000380985|NLN	ENSG00000123213|ENST00000380985|NLN	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.7841186523438	2	541.746793	1081.47903	-0.3941	-0.0002135	1.385	0.0007503	0.99088	0.0005368	542.2494047684467	95.868	0.99086	94.039	93.481	94.471	-1.8286					23	19	2	0	0	0	0.028476	1	6272	6272		18.324	0	1	31048			37468	3583	30911	30937	40881	40881					-0.058447007939776086
MAAKFHFI	8	Unmodified	_MAAKFHFI_					0	0	0			REV__nc|ENSG00000152778|Q13325-2|IFIT5	REV__nc|ENSG00000152778|Q13325-2|IFIT5	MULTI-MSMS	OvCa9_classI_Rep3	3	482.7602233886719	2	482.757298	963.500044	2.1392	0.0010327	3.7465	0.0018086	5.8856	0.0028413	482.7588804234167	57.803	3.1186	54.676	53.456	56.575	-3.1264					158	85	3	0	0	0	0.69415	1	1720	1720		44.531	5.2782	1	89902	+		37469	20304	30912	30938	40882	40882					0.016833540961897597
MAALAPLPPL	10	Unmodified	_MAALAPLPPL_					0	0	0		ENSG00000009844|ENST00000367630|VTA1	ENSG00000009844|ENST00000367630|VTA1	ENSG00000009844|ENST00000367630|VTA1	MULTI-MSMS	OvCa9_classI_Rep2	2	497.2958068847656	2	497.293714	992.572874	-0.63886	-0.0003177	3.9427	0.0019607	3.3038	0.001643	497.29556624795856	76.294	1.7763	74.44	74.044	75.82	-1.854					92	33	4	0	0	0	0.4178	1	6324	6324		65.897	5.4938	1	888620			37470	933	30913	30939	40883	40883					0.07629063098954703
MAALAPLPPL	10	Unmodified	_MAALAPLPPL_					0	0	0		ENSG00000009844|ENST00000367630|VTA1	ENSG00000009844|ENST00000367630|VTA1	ENSG00000009844|ENST00000367630|VTA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.2966003417969	2	497.293714	992.572874	-0.37396	-0.00018597	3.5894	0.001785	3.2155	0.001599	497.29538179073666	77.454	1.5377	74.638	74.342	75.88	-2.8165					77	31	3	0	0	0	0.4178	1	6193	6193		65.897	4.9255	1	1109400			37471	933	30913	30939	40884	40884					0.07629063098954703
MAAMKRRA	8	Unmodified	_MAAMKRRA_					0	0	0			REV__ENST00000397441.6_2_14:23398459-23398591:-|nuORF	REV__ENST00000397441.6_2_14:23398459-23398591:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	467.7571105957031	2	467.757307	933.50006	-0.74634	-0.00034911	1.9634	0.0009184	1.2171	0.0005693	467.7579866762519	28.217	0.44794	28.217	28.041	28.489	0					16	8	3	0	0	0	0.68312	1	902	902		46.766	6.1938	1	306700	+		37472	25354	30914	30940	40885	40885					0.030650308245526503
MAAMKRRA	8	Unmodified	_MAAMKRRA_					0	0	0			REV__ENST00000397441.6_2_14:23398459-23398591:-|nuORF	REV__ENST00000397441.6_2_14:23398459-23398591:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	467.757307	933.50006	-0.74634	-0.00034911	1.9634	0.0009184	1.2171	0.0005693	467.7579866762519	28.217	0.44794	28.217	28.041	28.489	0	0	0	NaN	46.766	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	306700	+		37473	25354	30914	30940							0.030650308245526503
MADPNIRFL	9	Unmodified	_MADPNIRFL_					0	0	0		ENST00000509573.5_1_5:138855949-138860944:-|nuORF;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENSG00000184584|ENST00000330794|STING1	ENST00000509573.5_1_5:138855949-138860944:-|nuORF	ENST00000509573.5_1_5:138855949-138860944:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	538.78173828125	2	538.781502	1075.54845	0.014532	7.8293E-06	0.095583	5.1498E-05	0.11011	5.9327E-05	538.7814239929115	105.13	1.269	105.13	104.83	106.1	0					71	28	4	0	0	0	0.2784	2	11790	11790;11814		65.465	15.441	1	4233400			37474	8173	30915	30941	40886;40887	40886					0.013698029454417338
MADPNIRFL	9	Unmodified	_MADPNIRFL_					0	0	0		ENST00000509573.5_1_5:138855949-138860944:-|nuORF;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENSG00000184584|ENST00000330794|STING1	ENST00000509573.5_1_5:138855949-138860944:-|nuORF	ENST00000509573.5_1_5:138855949-138860944:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	538.781502	1075.54845	-1.1299	-0.00060879	1.0196	0.00054935	-0.11032	-5.944E-05	538.7821246912081	105.31	0.34803	104.87	104.7	105.05	-0.43642	-0.055891	0.0011412	NaN	65.465	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15127			37475	8173	30915	30941							0.013698029454417338
MADPNIRFL	9	Unmodified	_MADPNIRFL_					0	0	0		ENST00000509573.5_1_5:138855949-138860944:-|nuORF;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENSG00000184584|ENST00000330794|STING1	ENST00000509573.5_1_5:138855949-138860944:-|nuORF	ENST00000509573.5_1_5:138855949-138860944:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	538.781502	1075.54845	1.3301	0.00071663	-1.2259	-0.0006605	0.10417	5.6126E-05	538.7808797246032	106.14	0.5219	104.79	104.61	105.14	-1.3482	-0.14248	-0.0012785	NaN	65.465	14	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19256			37476	8173	30915	30941							0.013698029454417338
MAEAKQTLIE	10	Unmodified	_MAEAKQTLIE_					0	0	0		ENSG00000145332|ENST00000273963|KLHL8	ENSG00000145332|ENST00000273963|KLHL8	ENSG00000145332|ENST00000273963|KLHL8	MULTI-MSMS	OvCa9_classI_Rep3	3	567.296875	2	567.297181	1132.57981	0.42871	0.0002432	0.22004	0.00012483	0.64875	0.00036803	567.2971466273868	129.51	1.1381	128.4	128.04	129.18	-1.1121					71	22	5	0	0	0	0.53807	1	10226	10226		49.536	0	1	263930			37477	5215	30916	30942	40888	40888					0.018823311888809258
MAEDPGREVF	10	Unmodified	_MAEDPGREVF_					0	0	0			REV__ENSG00000024422|ENST00000263277|EHD2	REV__ENSG00000024422|ENST00000263277|EHD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.2967529296875	2	575.763506	1149.51246	2.2545	0.0012981	4.1119	0.0023675	6.3664	0.0036655	575.765656272452	94.68	0.81004	94.68	94.433	95.244	0					24	18	2	0	0	0	0.026714	1	10357	10357		42.864	11.334	1	382060	+		37478	16564	30917	30943	40889	40889					-0.0563169902206937
MAEDPGREVF	10	Unmodified	_MAEDPGREVF_					0	0	0			REV__ENSG00000024422|ENST00000263277|EHD2	REV__ENSG00000024422|ENST00000263277|EHD2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	575.763506	1149.51246	-1.4585	-0.00083974	0.52345	0.00030138	-0.93503	-0.00053836	575.7641640212848	96.662	0.67181	94.833	94.621	95.293	-1.8286	0.07644	-0.002733	NaN	35.152	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14054	+		37479	16564	30917	30943							-0.0563169902206937
MAEGLCIRKG	10	Unmodified	_MAEGLCIRKG_					0	0	0			REV__nc|ENSG00000290611|Q6ZSU1|CYP2G1P	REV__nc|ENSG00000290611|Q6ZSU1|CYP2G1P	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.7310791015625	2	539.280812	1076.54707	2.4506	0.0013216	4.4532	0.0024015	6.9038	0.0037231	539.283338546143	93.998	0.67466	93.998	93.632	94.306	0					31	15	3	0	0	0	0.026891	1	10165	10165		18.262	0	1	1080000	+		37480	29213	30918	30944	40890	40890					0.011858455850187966
MAEIASATAAT	11	Unmodified	_MAEIASATAAT_					0	0	0			REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	REV__nc|ENSG00000100106|Q9H2D6-3|TRIOBP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.2881469726562	2	518.752607	1035.49066	-0.25972	-0.00013473	-3.9484	-0.0020482	-4.2081	-0.002183	519.2509832048747	78.329	0.14461	75.512	75.409	75.554	-2.8165					4	2	2	0	0	0	0.025315	1	6299	6299		37.812	0	1	8516.4	+		37481	17367	30919	30945	40891	40891					-0.025665037706630756
MAEKGQEQIY	10	Unmodified	_MAEKGQEQIY_					0	0	0			REV__tr|A0A553SIS5|A0A553SIS5_NIACIPhosphoglucomutaseOS=NialliacirculansOX=1397GN=CEQ21_15425PE=3SV=1	REV__tr|A0A553SIS5|A0A553SIS5_NIACIPhosphoglucomutaseOS=NialliacirculansOX=1397GN=CEQ21_15425PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	598.7918090820312	2	598.784438	1195.55432	2.1721	0.0013006	3.5148	0.0021046	5.6869	0.0034052	598.7864076224172	110.33	1.0705	110.33	110.04	111.11	0					74	23	4	0	0	0	0.26424	1	12509	12509		85.161	5.4482	1	5513400	+		37482	29923	30920	30946	40892	40892					-0.03563143333531116
MAELKIKK	8	Unmodified	_MAELKIKK_					0	0	0			REV__nc|ENSG00000276644|Q9UI36-3|DACH1	REV__nc|ENSG00000276644|Q9UI36-3|DACH1	MULTI-MSMS	OvCa9_classI_Rep3	3	480.7975158691406	2	480.799163	959.583773	-0.37436	-0.00017999	-3.2987	-0.001586	-3.6731	-0.001766	480.7973622689828	116.04	2.9694	115	114.65	117.62	-1.0414					124	59	3	0	0	0	0.74229	1	8677	8677		30.504	0	1	286570	+		37483	23630	30921	30947	40893	40893					0.10236465473246881
MAEQTYSWA	9	Unmodified	_MAEQTYSWA_					0	0	0		ENSG00000157837|ENST00000353487|SPPL3	ENSG00000157837|ENST00000353487|SPPL3	ENSG00000157837|ENST00000353487|SPPL3	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8128662109375	2	543.731674	1085.4488	-0.92351	-0.00050214	-1.8082	-0.00098318	-2.7317	-0.0014853	543.730456111049	70.251	0.52569	70.251	69.962	70.488	0					23	12	2	0	0	0	0.027452	1	6706	6706		67.494	44.914	1	601450			37484	5915	30922	30948	40894	40894					-0.09051059459170574
MAEVASRDP	9	Unmodified	_MAEVASRDP_					0	0	0		ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.28564453125	2	488.231842	974.44913	-0.61278	-0.00029918	-2.9056	-0.0014186	-3.5184	-0.0017178	488.2303524495482	49.16	0.642	46.399	46.127	46.769	-2.7603					20	12	2	0	0	0	0.027432	1	3072	3072		49.536	0	1	40655			37485	2506	30923	30949	40895	40895					-0.03911639739317252
MAEVRALHT	9	Unmodified	_MAEVRALHT_					0	0	0			REV__nc|ENSG00000084234|Q06481-5|APLP2	REV__nc|ENSG00000084234|Q06481-5|APLP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.82470703125	2	514.271301	1026.52805	-0.087442	-4.4969E-05	1.2304	0.00063274	1.1429	0.00058778	514.2722649640773	46.615	0.57419	46.615	46.456	47.03	0					13	12	2	0	0	0	0.027433	1	3344	3344		51.335	23.081	1	61728	+		37486	17121	30924	30950	40896	40896					0.015846322856077677
MAFALLRP	8	Unmodified	_MAFALLRP_					0	0	0		ENSG00000125878|ENST00000246080|TCF15	ENSG00000125878|ENST00000246080|TCF15	ENSG00000125878|ENST00000246080|TCF15	MULTI-MSMS	OvCa9_classI_Rep2	2	459.76641845703125	2	459.765123	917.515694	0.53849	0.00024758	2.1116	0.00097083	2.6501	0.0012184	459.7659292423094	31.095	1.0341	28.385	28.199	29.233	-2.7097					35	20	2	0	0	0	0.69415	1	912	912		44.531	9.3304	1	85712			37487	3750	30925	30951	40897	40897					0.053636406132454795
MAFRYPEP	8	Unmodified	_MAFRYPEP_					0	0	0		ENSG00000082212|ENST00000321341|ME2	ENSG00000082212|ENST00000321341|ME2	ENSG00000082212|ENST00000321341|ME2	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.7717590332031	2	505.741845	1009.46914	2.5675	0.0012985	3.4624	0.0017511	6.0299	0.0030496	505.74352954952974	75.602	0.31527	75.602	75.407	75.723	0					11	7	2	0	0	0	0.028476	1	7525	7525		20.482	6.7065	1	614220			37488	1673	30926	30952	40898	40898					-0.03521844008696462
MAFVHTSVN	9	Unmodified	_MAFVHTSVN_					0	0	0		nc|ENSG00000007174|Q9NYC9-2|DNAH9;DNAH9|p.H4399Qfs*22|1|0.04|ENSG00000007174|chr17:11962220-11962220|T/-|frameshift_variant;ENSG00000007174|ENST00000262442|DNAH9	nc|ENSG00000007174|Q9NYC9-2|DNAH9	nc|ENSG00000007174|Q9NYC9-2|DNAH9	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.257568359375	2	503.244752	1004.47495	0.13383	6.7349E-05	1.9062	0.00095929	2.04	0.0010266	503.24576050605555	62.397	0.5764	62.397	62.165	62.741	0					30	13	4	0	0	0	0.027462	1	5551	5551		35.618	7.364	1	1495100			37489	749	30927	30953	40899	40899					-0.02710745497017797
MAGAPWCLMP	10	Unmodified	_MAGAPWCLMP_					0	0	0			REV__ENST00000323446.9_3_19:50209627-50210797:+|nuORF	REV__ENST00000323446.9_3_19:50209627-50210797:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.2996826171875	2	538.739934	1075.46531	-0.80187	-0.000432	2.4202	0.0013039	1.6184	0.00087187	538.7410154297454	42.074	0.43361	42.074	41.809	42.242	0					18	9	3	0	0	0	0.027007	1	2678	2678		19.36	0	1	278900	+		37490	24464	30928	30954	40900	40900					-0.06939973098405972
MAGENAESG	9	Unmodified	_MAGENAESG_					0	0	0			REV__tr|A0A7D6VU02|A0A7D6VU02_9CLOTAspartateaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23540PE=3SV=1	REV__tr|A0A7D6VU02|A0A7D6VU02_9CLOTAspartateaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23540PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1717834472656	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.51865	1	1811	1811		40.778	1.972	1	60065	+		37491	31643	30929	30955	40901	40901					-0.10924467452775843
MAGGVMDKEYV	11	Unmodified	_MAGGVMDKEYV_					0	0	0		ENST00000563743.1_1_16:30393079-30393866:-|nuORF;nc|ENSG00000180096|Q8WYJ6-2|SEPTIN1;ENST00000563957.6_1_16:30392598-30394125:-|nuORF;ENSG00000180096|ENST00000321367|SEPTIN1;ENST00000562152.1_1_16:30393554-30394125:-|nuORF	ENST00000563743.1_1_16:30393079-30393866:-|nuORF	ENST00000563743.1_1_16:30393079-30393866:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	600.2716674804688	2	600.275392	1198.53623	-4.8728	-0.002925	-0.67204	-0.00040341	-5.5448	-0.0033284	600.2748840186918	159.86	2.843	158.53	158.01	160.85	-1.3316					169	56	5	0	0	0	0.68021	2	13858	13858;13888		36.447	4.9169	1	277240			37492	7855	30930	30956	40902;40903	40902					-0.0550960157991085
MAGIRISAVT	10	Unmodified	_MAGIRISAVT_					0	0	0		tr|A0A7D6VSB6|A0A7D6VSB6_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_05720PE=3SV=1	tr|A0A7D6VSB6|A0A7D6VSB6_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_05720PE=3SV=1	tr|A0A7D6VSB6|A0A7D6VSB6_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_05720PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	509.7875061035156	2	509.789327	1017.5641	-0.97493	-0.00049701	-3.0341	-0.0015468	-4.0091	-0.0020438	509.7875739236814	100.78	1.9275	99.173	98.518	100.45	-1.6053					62	37	4	0	0	0	0.55109	1	6857	6857		47.96	0.30219	1	550400			37493	35009	30931	30957	40904	40904					0.05602089462490767
MAGLELLSDQ	10	Unmodified	_MAGLELLSDQ_					0	0	0		ENSG00000178896|ENST00000316052|EXOSC4	ENSG00000178896|ENST00000316052|EXOSC4	ENSG00000178896|ENST00000316052|EXOSC4	MULTI-MSMS	OvCa99_classI_Rep5	1	538.7694091796875	2	538.768257	1075.52196	0.48004	0.00025863	0.36636	0.00019738	0.8464	0.00045601	538.7683937070504	72.463	1.0297	72.463	72.125	73.155	0					63	25	4	0	0	0	0.31157	1	7039	7039		79.451	16.145	1	10653000			37494	7783	30932	30958	40905	40905					-0.012779307365462955
MAGLKELLR	9	Unmodified	_MAGLKELLR_					0	0	0		ENSG00000160959|ENST00000292524|LRRC14	ENSG00000160959|ENST00000292524|LRRC14	ENSG00000160959|ENST00000292524|LRRC14	MULTI-MSMS	OvCa9_classI_Rep2	2	515.8056640625	2	515.807519	1029.60049	-0.17166	-8.8541E-05	-3.1143	-0.0016064	-3.2859	-0.0016949	515.8057522410776	136.15	1.0273	135.92	135.57	136.6	-0.22696					51	20	4	0	0	0	0.55011	1	13528	13528		37.812	3.639	1	147900			37495	6109	30933	30959	40906	40906					0.08686966359186954
MAHFFFET	8	Unmodified	_MAHFFFET_					0	0	0			REV__ENSG00000181222|ENST00000674977|POLR2A	REV__ENSG00000181222|ENST00000674977|POLR2A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.2431640625	2	515.228571	1028.44259	1.1486	0.0005918	-1.7596	-0.00090658	-0.61095	-0.00031478	515.2275424985738	85.567	0.88317	82.921	82.66	83.543	-2.6463					29	17	2	0	0	0	0.028476	1	7251	7251		29.842	0	1	55341	+		37496	22222	30934	30960	40907	40907					-0.07049532900009581
MAIKPAVLK	9	Unmodified	_MAIKPAVLK_					0	0	0		ENSG00000065615|ENST00000369681|CYB5R4	ENSG00000065615|ENST00000369681|CYB5R4	ENSG00000065615|ENST00000369681|CYB5R4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.2557678222656	2	485.809531	969.604509	0.43728	0.00021243	-0.22407	-0.00010886	0.21321	0.00010358	485.8093709862264	111.55	1.1586	110.04	109.68	110.84	-1.5111					31	21	2	0	0	0	0.027462	1	10247	10247		38.806	19.446	1	15765			37497	1334	30935	30961	40908	40908					0.11849055852917445
MAILAGLIFP	10	Unmodified	_MAILAGLIFP_					0	0	0			REV__CON__Q3ZBD7	REV__CON__Q3ZBD7	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8154907226562	2	523.309364	1044.60417	1.8117	0.0009481	-4.1183	-0.0021552	-2.3066	-0.0012071	523.8087180613135	107.41	0.24651	107.41	107.31	107.56	0					12	5	3	0	0	0	0.026839	1	12125	12125		35.201	1.6851	1	9459500	+	+	37498	16213	30936	30962	40909	40909					0.083656361330668
MAILAGLIFP	10	Unmodified	_MAILAGLIFP_					0	0	0			REV__CON__Q3ZBD7	REV__CON__Q3ZBD7	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	523.309364	1044.60417	-0.23759	-0.00012433	-7.3783	-0.0038611	-7.6159	-0.0039855	523.3053728834569	108.59	1.7075	107.39	107.11	108.82	-1.1978	-0.00044309	0.00019857	NaN	44.531	93	32	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	782850	+	+	37499	16213	30936	30962							0.083656361330668
MAIQKALQP	9	Unmodified	_MAIQKALQP_					0	0	0		ENST00000467703.1_1_3:113789475-113795805:+|nuORF;nc|ENSG00000151576|Q9H974-2|QTRT2;nc|ENSG00000151576|Q9H974-3|QTRT2;ENSG00000151576|ENST00000281273|QTRT2;nc|ENSG00000151576|Q9H974-4|QTRT2	ENST00000467703.1_1_3:113789475-113795805:+|nuORF	ENST00000467703.1_1_3:113789475-113795805:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.2804870605469	2	500.28642	998.558287	-0.14942	-7.4751E-05	-2.1107	-0.001056	-2.2601	-0.0011307	500.7867638639086	90.197	1.4303	87.622	87.348	88.779	-2.575					40	27	2	0	0	0	0.027462	1	7818	7818		38.806	5.2906	1	50682			37500	5565	30937	30963	40910	40910					0.05894990950821466
MAITSVQLL	9	Oxidation (M)	_M(Oxidation (M))AITSVQLL_		M(1)AITSVQLL		M(57)AITSVQLL	0	0	1			REV__ENSG00000197992|ENST00000355819|CLEC9A	REV__ENSG00000197992|ENST00000355819|CLEC9A	MULTI-MSMS	OvCa99_classI_Rep5	1	496.2773132324219	2	496.27826	990.541968	0.76516	0.00037973	-1.7757	-0.00088126	-1.0106	-0.00050153	496.2772247996838	153.38	1.4737	153.38	153.05	154.52	0					56	29	4	0	0	0	0.35444	1	17954	17954		56.721	10.769	1	626080	+		37501	22977	30938	30964	40911	40911		534			0.04631864994087209
MAKLALEKL	9	Oxidation (M)	_M(Oxidation (M))AKLALEKL_		M(1)AKLALEKL		M(82)AKLALEKL	0	0	1		ENST00000260731.4_1_10:94366146-94368792:+|nuORF	ENST00000260731.4_1_10:94366146-94368792:+|nuORF	ENST00000260731.4_1_10:94366146-94368792:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	516.8082885742188	2	516.809728	1031.6049	0.735	0.00037986	-2.439	-0.0012605	-1.704	-0.00088063	516.808359095352	156.5	1.0064	156.5	156.19	157.2	0					34	19	3	0	0	0	0.16562	1	18333	18333		82.241	7.9855	1	246060			37502	9853	30939	30965	40912	40912		287			0.09036430782111893
MAKLLDSITV	10	Unmodified	_MAKLLDSITV_					0	0	0		ENSG00000132842|ENST00000255194|AP3B1;nc|ENSG00000132842|O00203-3|AP3B1;AP3B1|p.N759Ifs*2|1|0.12|ENSG00000132842|chr5:78110321-78110328|TTTTTCAT/-|frameshift_variant	ENSG00000132842|ENST00000255194|AP3B1	ENSG00000132842|ENST00000255194|AP3B1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.7974243164062	2	545.812467	1089.61038	-1.363	-0.00074395	1.3468	0.00073509	-0.016245	-8.8667E-06	545.813181917696	88.815	1.4889	86.212	85.882	87.371	-2.6027					43	29	2	0	0	0	0.026656	1	7621	7621		75.043	0	1	220830			37503	4179	30940	30966	40913	40913					0.06916109573899121
MAKSNLIGP	9	Unmodified	_MAKSNLIGP_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MSMS	OvCa99_classI_Rep5	1	465.75946044921875	2	465.757495	929.500437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.738	1	32.738	32.238	33.238	0								0	0	0	0.16648	1	1450	1450		60.972	6.1956	1		+		37504	19860	30941	30967	40914	40914					0.03286729025398927
MALALGLM	8	Unmodified	_MALALGLM_					0	0	0		ENST00000527697.5_1_11:61641083-61641116:-|nuORF	ENST00000527697.5_1_11:61641083-61641116:-|nuORF	ENST00000527697.5_1_11:61641083-61641116:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	409.24713134765625	2	410.226985	818.439417	1.0814	0.00044363	0.39397	0.00016162	1.4754	0.00060525	410.22548698759925	61.072	0.25055	57.642	57.494	57.744	-3.43					5	4	2	0	0	0	0.028476	1	4161	4161		24.504	0	1	3560.5			37505	13241	30942	30968	40915	40915					0.02293500721611963
MALKKVSKS	9	Unmodified	_MALKKVSKS_					0	0	0		ENSG00000186625|ENST00000367411|KATNA1	ENSG00000186625|ENST00000367411|KATNA1	ENSG00000186625|ENST00000367411|KATNA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.299560546875	2	496.30207	990.589587	-0.20996	-0.0001042	-3.4091	-0.0016919	-3.619	-0.0017961	496.30023015612176	123.47	1.2954	122.1	121.8	123.1	-1.3666					64	25	3	0	0	0	0.60342	1	11718	11718		31.53	2.3803	1	220800			37506	8349	30943	30969	40916	40916					0.09391563984934237
MALLALQNN	9	Unmodified	_MALLALQNN_					0	0	0			REV__ENSG00000174776|ENST00000682715|WDR49	REV__ENSG00000174776|ENST00000682715|WDR49	MSMS	OvCa99_classI_Rep5	1	494.2678527832031	2	494.268227	986.521901	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.144	1	71.144	70.644	71.644	0								0	0	0	0.17121	1	6863	6863		47.916	0	1		+		37507	21851	30944	30970	40917	40917					0.028101140541139102
MALLLLLFLG	10	Unmodified	_MALLLLLFLG_					0	0	0		ENSG00000073067|ENST00000308919|CYP2W1	ENSG00000073067|ENST00000308919|CYP2W1	ENSG00000073067|ENST00000308919|CYP2W1	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.7611083984375	2	552.348489	1102.68242	1.1957	0.00066044	3.9227	0.0021667	5.1184	0.0028272	552.3505538929761	83.566	0.63715	83.566	83.204	83.841	0					19	14	2	0	0	0	0.027007	1	8699	8699		26.796	0	1	245730			37508	1487	30945	30971	40918	40918					0.13519068718301241
MALPEKILK	9	Unmodified	_MALPEKILK_					0	0	0			REV__tr|A0A7D6ZJJ7|A0A7D6ZJJ7_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11300PE=3SV=1	REV__tr|A0A7D6ZJJ7|A0A7D6ZJJ7_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11300PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.845947265625	2	521.820095	1041.62564	2.0536	0.0010716	-2.6799	-0.0013984	-0.6263	-0.00032681	521.8187956459241	121.38	0.37414	121.38	121.15	121.52	0					11	8	2	0	0	0	0.027462	1	13973	13973		37.159	19.794	1	32495	+		37509	32086	30946	30972	40919	40919					0.10649021161771088
MALPELTVT	9	Unmodified	_MALPELTVT_					0	0	0			REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR	REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.2825927734375	2	487.764986	973.515419	0.18805	9.1726E-05	2.6668	0.0013008	2.8549	0.0013925	487.7662603966603	78.628	0.99178	75.876	75.522	76.514	-2.7514					32	20	2	0	0	0	0.027462	1	6412	6412		40.573	16.053	1	209430	+		37510	19683	30947	30973	40920	40920					0.02760176102742662
MALPELTVT	9	Unmodified	_MALPELTVT_					0	0	0			REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR	REV__nc|ENSG00000140534|Q7Z2Z1-2|TICRR	MULTI-MATCH	OvCa9_classI_Rep2	2		2	487.764986	973.515419	-0.073486	-3.5844E-05	3.4153	0.0016659	3.3418	0.00163	487.7664037074028	77.695	1.2544	75.905	75.208	76.462	-1.7894	0.014602	0.00025699	NaN	47.916	39	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48714	+		37511	19683	30947	30973							0.02760176102742662
MALRNSLCLI	10	Oxidation (M)	_M(Oxidation (M))ALRNSLCLI_		M(1)ALRNSLCLI		M(58)ALRNSLCLI	0	0	1		ENSG00000181017|ENST00000641377|OR56B2P;nc|ENSG00000181017|Q8NGI1|OR56B2P	ENSG00000181017|ENST00000641377|OR56B2P	ENSG00000181017|ENST00000641377|OR56B2P	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.3116455078125	2	575.309569	1148.60458	-1.245	-0.00071626	3.0248	0.0017402	1.7798	0.0010239	575.3112834479634	99.615	3.1767	97.29	96.951	100.13	-2.3253					165	62	6	0	0	0	0.47142	1	8981	8981		58.23	11.773	1	6971900			37512	7912	30948	30974	40921	40921		243			0.03622687790584678
MALSFSTTSII	11	Unmodified	_MALSFSTTSII_					0	0	0			REV__tr|A0A553SF94|A0A553SF94_NIACIBcr/CflAfamilyeffluxtransporterOS=NialliacirculansOX=1397GN=CEQ21_08445PE=3SV=1	REV__tr|A0A553SF94|A0A553SF94_NIACIBcr/CflAfamilyeffluxtransporterOS=NialliacirculansOX=1397GN=CEQ21_08445PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	585.8107299804688	2	585.807382	1169.60021	0.15835	9.2764E-05	2.5493	0.0014934	2.7077	0.0015862	585.8088520660382	67.119	1.4249	63.629	63.198	64.622	-3.4902					86	26	5	0	0	0	0.31264	2	4936	4911;4936		67.494	12.717	1	1424200	+		37513	29551	30949	30975	40922;40923	40923					0.022195018487082052
MALSFSTTSII	11	Unmodified	_MALSFSTTSII_					0	0	0			REV__tr|A0A553SF94|A0A553SF94_NIACIBcr/CflAfamilyeffluxtransporterOS=NialliacirculansOX=1397GN=CEQ21_08445PE=3SV=1	REV__tr|A0A553SF94|A0A553SF94_NIACIBcr/CflAfamilyeffluxtransporterOS=NialliacirculansOX=1397GN=CEQ21_08445PE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	585.807382	1169.60021	-1.1227	-0.00065767	7.0452	0.0041271	5.9226	0.0034695	585.8115966870614	63.854	0.51623	63.854	63.534	64.051	0	0.1117	0.0048855	NaN	67.494	28	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	582540	+		37514	29551	30949	30975							0.022195018487082052
MALSFSTTSII	11	Unmodified	_MALSFSTTSII_					0	0	0			REV__tr|A0A553SF94|A0A553SF94_NIACIBcr/CflAfamilyeffluxtransporterOS=NialliacirculansOX=1397GN=CEQ21_08445PE=3SV=1	REV__tr|A0A553SF94|A0A553SF94_NIACIBcr/CflAfamilyeffluxtransporterOS=NialliacirculansOX=1397GN=CEQ21_08445PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	585.807382	1169.60021	0.29356	0.00017197	2.4964	0.0014624	2.79	0.0016344	585.8087488638296	66.439	1.3396	63.743	63.17	64.51	-2.6958	0.001381	-0.00044395	NaN	67.494	73	26	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	311120	+		37515	29551	30949	30975							0.022195018487082052
MALSFSTTSII	11	Unmodified	_MALSFSTTSII_					0	0	0			REV__tr|A0A553SF94|A0A553SF94_NIACIBcr/CflAfamilyeffluxtransporterOS=NialliacirculansOX=1397GN=CEQ21_08445PE=3SV=1	REV__tr|A0A553SF94|A0A553SF94_NIACIBcr/CflAfamilyeffluxtransporterOS=NialliacirculansOX=1397GN=CEQ21_08445PE=3SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	585.807382	1169.60021	0.15835	9.2764E-05	2.5493	0.0014934	2.7077	0.0015862	585.8088520660382	67.119	1.4249	63.629	63.198	64.622	-3.4902	-0.11308	-0.00038195	NaN	67.494	86	26	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1424200	+		37516	29551	30949	30975							0.022195018487082052
MALVHKLLRGT	11	Unmodified	_MALVHKLLRGT_					0	0	0		ENSG00000137806|ENST00000260361|NDUFAF1	ENSG00000137806|ENST00000260361|NDUFAF1	ENSG00000137806|ENST00000260361|NDUFAF1	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8685913085938	2	619.873725	1237.7329	-3.8587	-0.0023919	-3.029	-0.0018776	-6.8877	-0.0042695	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.69808	1	15253	15253		30.318	3.6248	1	492670			37517	4618	30950	30976	40924	40924					0.12353991095983474
MALVHKLLRGT	11	Unmodified	_MALVHKLLRGT_					0	0	0		ENSG00000137806|ENST00000260361|NDUFAF1	ENSG00000137806|ENST00000260361|NDUFAF1	ENSG00000137806|ENST00000260361|NDUFAF1	MULTI-MSMS	OvCa9_classI_Rep3	3	619.86962890625	2	619.873725	1237.7329	-3.6059	-0.0022352	-3.3723	-0.0020904	-6.9782	-0.0043256	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.69455	2	12677	12677;12809		31.53	7.3271	1	664560			37518	4618	30950	30976	40925;40926	40925					0.12353991095983474
MALVLDEKD	9	Unmodified	_MALVLDEKD_					0	0	0		nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;CDK5RAP2|p.Y1498Gfs*4|1|0.29|ENSG00000136861|chr9:120409227-120409240|TCACGCTGGCATAC/-|frameshift_variant;ENST00000483412.5_1_9:123170580-123298708:-|nuORF;ENST00000472883.1_1_9:123290187-123301393:-|nuORF	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.3170776367188	2	517.26535	1032.51615	-0.40058	-0.00020721	0.28309	0.00014643	-0.1175	-6.0776E-05	517.2653141010748	74.788	1.4524	71.557	71.192	72.645	-3.2308					51	29	3	0	0	0	0.027462	1	5938	5938		33.516	0.70317	1	154550			37519	4524	30951	30977	40927	40927					0.0011897075178239902
MALVLDEKD	9	Unmodified	_MALVLDEKD_					0	0	0		nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;CDK5RAP2|p.Y1498Gfs*4|1|0.29|ENSG00000136861|chr9:120409227-120409240|TCACGCTGGCATAC/-|frameshift_variant;ENST00000483412.5_1_9:123170580-123298708:-|nuORF;ENST00000472883.1_1_9:123290187-123301393:-|nuORF	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	517.26535	1032.51615	-0.16111	-8.3334E-05	0.63374	0.00032781	0.47263	0.00024448	517.2653247425866	73.757	0.84132	71.357	71.001	71.843	-2.3999	-0.099938	0.00025561	NaN	33.516	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42920			37520	4524	30951	30977							0.0011897075178239902
MALVQRLGPLP	11	Unmodified	_MALVQRLGPLP_					0	0	0		ENST00000315183.11_2_16:24741057-24741108:+|nuORF	ENST00000315183.11_2_16:24741057-24741108:+|nuORF	ENST00000315183.11_2_16:24741057-24741108:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	597.8555297851562	2	597.855001	1193.69545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	151.16	1	149.73	149.23	150.23	-1.4344								0	0	0	0.19474	1	14939	14939		20.947	0.95016	1				37521	10330	30952	30978	40928	40928					0.10634899830392897
MANGAVIHL	9	Unmodified	_MANGAVIHL_					0	0	0		nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1	nc|ENSG00000099995|Q15459-2|SF3A1	nc|ENSG00000099995|Q15459-2|SF3A1	MULTI-MSMS	OvCa99_classI_Rep5	1	463.2522277832031	2	463.249837	924.485122	2.281	0.0010567	0.39747	0.00018413	2.6784	0.0012408	463.24989973864336	84.084	0.59232	84.084	83.88	84.472	0					27	13	3	0	0	0	0.073432	1	8768	8768		105.27	0	1	1438000			37522	1991	30953	30979	40929	40929					0.019858622282072247
MANGAVIHL	9	Unmodified	_MANGAVIHL_					0	0	0		nc|ENSG00000099995|Q15459-2|SF3A1;ENSG00000099995|ENST00000215793|SF3A1	nc|ENSG00000099995|Q15459-2|SF3A1	nc|ENSG00000099995|Q15459-2|SF3A1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	463.249837	924.485122	0.38184	0.00017689	-1.3406	-0.00062102	-0.95874	-0.00044414	463.24948941568863	86.754	0.44181	84.127	83.957	84.399	-2.6269	0.021725	-0.001294	NaN	105.27	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19217			37523	1991	30953	30979							0.019858622282072247
MAPEVINESGY	11	Unmodified	_MAPEVINESGY_					0	0	0		nc|ENSG00000176601|Q56UN5-3|MAP3K19;ENSG00000176601|ENST00000392915|MAP3K19;nc|ENSG00000176601|Q56UN5-7|MAP3K19;nc|ENSG00000176601|Q56UN5-4|MAP3K19;nc|ENSG00000176601|Q56UN5-5|MAP3K19	nc|ENSG00000176601|Q56UN5-3|MAP3K19	nc|ENSG00000176601|Q56UN5-3|MAP3K19	MULTI-MSMS	OvCa9_classI_Rep4_	4	605.278076171875	2	605.276446	1208.53834	-0.56254	-0.00034049	3.6456	0.0022066	3.0831	0.0018661	605.2784614743479	118.57	0.94073	117.23	116.89	117.83	-1.3444					37	17	3	0	0	0	0.65063	1	11117	11117		40.058	1.3046	1	103880			37524	7617	30954	30980	40930	40930					-0.05758849570452185
MAPEVINESGY	11	Unmodified	_MAPEVINESGY_					0	0	0		nc|ENSG00000176601|Q56UN5-3|MAP3K19;ENSG00000176601|ENST00000392915|MAP3K19;nc|ENSG00000176601|Q56UN5-7|MAP3K19;nc|ENSG00000176601|Q56UN5-4|MAP3K19;nc|ENSG00000176601|Q56UN5-5|MAP3K19	nc|ENSG00000176601|Q56UN5-3|MAP3K19	nc|ENSG00000176601|Q56UN5-3|MAP3K19	MULTI-MATCH	OvCa9_classI_Rep2	2		2	605.276446	1208.53834	-1.7063	-0.0010328	4.3439	0.0026293	2.6376	0.0015965	605.278973943112	117.74	1.3414	117.59	117.24	118.58	-0.14755	0.20408	0.0011735	NaN	40.058	53	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82401			37525	7617	30954	30980							-0.05758849570452185
MAPEVINESGY	11	Unmodified	_MAPEVINESGY_					0	0	0		nc|ENSG00000176601|Q56UN5-3|MAP3K19;ENSG00000176601|ENST00000392915|MAP3K19;nc|ENSG00000176601|Q56UN5-7|MAP3K19;nc|ENSG00000176601|Q56UN5-4|MAP3K19;nc|ENSG00000176601|Q56UN5-5|MAP3K19	nc|ENSG00000176601|Q56UN5-3|MAP3K19	nc|ENSG00000176601|Q56UN5-3|MAP3K19	MULTI-MATCH	OvCa9_classI_Rep3	3		2	605.276446	1208.53834	1.5876	0.00096095	1.3593	0.00082276	2.9469	0.0017837	605.2771163696822	118.37	1.0904	117.33	116.98	118.07	-1.0324	-0.049366	-0.0024395	NaN	40.058	51	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99970			37526	7617	30954	30980							-0.05758849570452185
MAPHVAGK	8	Unmodified	_MAPHVAGK_					0	0	0			REV__ENSG00000225110|ENST00000436629|PNMA6F	REV__ENSG00000225110|ENST00000436629|PNMA6F	MULTI-MSMS	OvCa9_classI_Rep2	2	405.71875	2	405.718173	809.421793	-0.3042	-0.00012342	1.8181	0.00073763	1.5139	0.00061421	405.7187689414806	119.3	1.6269	119.13	118.76	120.38	-0.17137					76	32	4	0	0	0	0.74679	1	11453	11453		28.254	4.0515	1	350390	+		37527	23362	30955	30981	40931	40931					0.00945921510970038
MAPKKNQST	9	Unmodified	_MAPKKNQST_					0	0	0			REV__GALNT6|p.D602N|1|0.16|ENSG00000139629|chr12:51354444-51354444|C/T|missense_variant	REV__GALNT6|p.D602N|1|0.16|ENSG00000139629|chr12:51354444-51354444|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	502.7622375488281	2	502.763309	1003.51206	1.2962	0.00065166	-1.3666	-0.00068706	-0.070404	-3.5396E-05	502.76247959947113	61.457	2.958	58.389	57.803	60.761	-3.0685					131	69	3	0	0	0	0.31747	1	2132	2132		60.972	7.6205	1	112640	+		37528	28148	30956	30982	40932	40932					0.010449260487234824
MAPSGLVYL	9	Unmodified	_MAPSGLVYL_					0	0	0			REV__ENSG00000182179|ENST00000333486|UBA7	REV__ENSG00000182179|ENST00000333486|UBA7	MULTI-MSMS	OvCa99_classI_Rep5	1	475.75433349609375	2	475.754421	949.494289	-0.16721	-7.9552E-05	0.97938	0.00046594	0.81217	0.00038639	475.75481479330756	23.41	0.74202	23.41	23.144	23.886	0					21	14	2	0	0	0	0.6926	1	339	339		20.482	1.1219	1	61907	+		37529	22267	30957	30983	40933	40933					0.017522107938702902
MAPVRKEP	8	Unmodified	_MAPVRKEP_					0	0	0			REV__ENSG00000078699|ENST00000342704|CBFA2T2	REV__ENSG00000078699|ENST00000342704|CBFA2T2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.2947998046875	2	464.257662	926.500772	-1.1581	-0.00053764	-3.3558	-0.001558	-4.5139	-0.0020956	464.2560516824366	106.51	0.6202	104.5	104.31	104.93	-2.0161					17	11	3	0	0	0	0.028476	1	9678	9678		25.45	5.4534	1	32687	+		37530	17029	30958	30984	40934	40934					0.03458148745255585
MAPVRKEP	8	Unmodified	_MAPVRKEP_					0	0	0			REV__ENSG00000078699|ENST00000342704|CBFA2T2	REV__ENSG00000078699|ENST00000342704|CBFA2T2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	464.257662	926.500772	-0.53136	-0.00024669	-3.2558	-0.0015115	-3.7872	-0.0017582	464.25601148953064	105.12	0.69276	104.69	104.46	105.15	-0.43642	0.11068	0.0002798	NaN	25.45	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25572	+		37531	17029	30958	30984							0.03458148745255585
MAPVRKEP	8	Unmodified	_MAPVRKEP_					0	0	0			REV__ENSG00000078699|ENST00000342704|CBFA2T2	REV__ENSG00000078699|ENST00000342704|CBFA2T2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	464.257662	926.500772	0.32501	0.00015089	-4.3188	-0.002005	-3.9938	-0.0018541	464.2554434419314	105.9	0.93976	104.55	104.35	105.29	-1.3482	-0.029245	-0.00070719	NaN	25.45	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31280	+		37532	17029	30958	30984							0.03458148745255585
MARALCRLPR	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MARALCRLPR_					1	0	0		ENST00000409726.5_1_2:238768318-238783297:+|nuORF;ENSG00000132329|ENST00000254661|RAMP1	ENST00000409726.5_1_2:238768318-238783297:+|nuORF	ENST00000409726.5_1_2:238768318-238783297:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	614.8385620117188	2	614.841902	1227.66925	-2.1634	-0.0013301	-3.6918	-0.0022699	-5.8552	-0.0036	614.8394745817393	38.144	1.0876	35.434	35.173	36.261	-2.7097					55	21	4	0	0	0	0.53885	1	1763	1763		49.442	17.912	1	117240			37533	4128	30959	30985	40935	40935					0.0645230738725786
MAREQHIKV	9	Unmodified	_MAREQHIKV_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OvCa99_classI_Rep5	1	556.3045043945312	2	556.305675	1110.5968	0.03602	2.0038E-05	-3.8925	-0.0021654	-3.8565	-0.0021454	556.3034596713502	73.406	1.1049	73.406	72.915	74.02	0					76	27	4	0	0	0	0.13504	1	7184	7184		87.696	13.441	1	14462000			37534	5793;36288	30960	30986	40936	40936					0.04592296585337863
MARGRGAGSV	10	Unmodified	_MARGRGAGSV_					0	0	0		ENST00000337231.5_1_17:72983994-72984096:+|nuORF	ENST00000337231.5_1_17:72983994-72984096:+|nuORF	ENST00000337231.5_1_17:72983994-72984096:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	481.27789306640625	2	481.253443	960.492332	-0.83865	-0.0004036	-1.28	-0.00061602	-2.1187	-0.0010196	481.25235590090216	83.022	0.8362	80.725	80.431	81.267	-2.2963					21	16	2	0	0	0	0.026688	1	4681	4681		32.812	10.853	1	29431			37535	10519	30961	30987	40937	40937					0.010505948286322564
MARGRGAGSV	10	Unmodified	_MARGRGAGSV_					0	0	0		ENST00000337231.5_1_17:72983994-72984096:+|nuORF	ENST00000337231.5_1_17:72983994-72984096:+|nuORF	ENST00000337231.5_1_17:72983994-72984096:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	481.253443	960.492332	0.19622	9.4432E-05	-1.7532	-0.00084373	-1.557	-0.0007493	481.25229593898933	83.783	0.86034	81.12	80.779	81.639	-2.6629	0.19761	-0.00021476	NaN	52.937	19	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31425			37536	10519	30961	30987							0.010505948286322564
MARHVVQP	8	Unmodified	_MARHVVQP_					0	0	0		nc|ENSG00000172992|Q8WVC6-2|DCAKD;ENST00000592902.5_1_17:43111330-43112253:-|nuORF;ENSG00000172992|ENST00000651974|DCAKD	nc|ENSG00000172992|Q8WVC6-2|DCAKD	nc|ENSG00000172992|Q8WVC6-2|DCAKD	MULTI-SECPEP	OvCa99_classI_Rep5	1	468.7406921386719	2	469.255454	936.496355	-0.91706	-0.00043034	-4.4837	-0.002104	-5.4007	-0.0025343	469.25328287252233	65.811	0.55152	65.811	65.507	66.059	0					23	13	2	0	0	0	0.028476	1	6098	6098		12.959	0	1	587130			37537	7340	30962	30988	40938	40938					0.025566843223487012
MATELIIGK	9	Unmodified	_MATELIIGK_					0	0	0		tr|A0A7D7A683|A0A7D7A683_9CLOTFe-SclusterassemblyscaffoldproteinNifUOS=ClostridiumintestinaleOX=36845GN=nifUPE=3SV=1	tr|A0A7D7A683|A0A7D7A683_9CLOTFe-SclusterassemblyscaffoldproteinNifUOS=ClostridiumintestinaleOX=36845GN=nifUPE=3SV=1	tr|A0A7D7A683|A0A7D7A683_9CLOTFe-SclusterassemblyscaffoldproteinNifUOS=ClostridiumintestinaleOX=36845GN=nifUPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	488.2805480957031	2	488.280803	974.547053	1.0912	0.00053281	-4.4587	-0.0021771	-3.3675	-0.0016443	488.27854447509577	150.08	0.59972	150.08	149.84	150.44	0					23	11	3	0	0	0	0.40667	1	17566	17566		51.335	1.3109	1	75274			37538	36189	30963	30989	40939	40939					0.0587616885669604
MATGNGRRLH	10	Unmodified	_MATGNGRRLH_					0	0	0		ENSG00000155959|ENST00000286428|VBP1	ENSG00000155959|ENST00000286428|VBP1	ENSG00000155959|ENST00000286428|VBP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.3518676757812	2	556.790724	1111.56689	-0.68625	-0.0003821	-2.8914	-0.0016099	-3.5777	-0.001992	556.7889930619259	27.266	0.89844	27.266	27.092	27.991	0					25	17	2	0	0	0	0.026867	1	844	844		42.864	16.171	1	451850			37539	5811	30964	30990	40940	40940					0.015573576400129241
MATPLPHPGVF	11	Unmodified	_MATPLPHPGVF_					0	0	0			REV__ENST00000380779.5_1_X:10535592-10544928:-|nuORF	REV__ENST00000380779.5_1_X:10535592-10544928:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8024291992188	2	583.804977	1165.5954	0.9784	0.0005712	-4.3928	-0.0025645	-3.4144	-0.0019933	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.70148	1	1413	1413		29.15	3.6994	1	155970	+		37540	25187	30965	30991	40941	40941					0.01922662496576777
MATRAGLQV	9	Unmodified	_MATRAGLQV_					0	0	0		ENSG00000155366|ENST00000339083|RHOC;ENST00000473074.1_1_1:113244164-113245337:-|nuORF	ENSG00000155366|ENST00000339083|RHOC	ENSG00000155366|ENST00000339083|RHOC	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.7617492675781	2	473.760569	945.506586	-0.26769	-0.00012682	-0.022114	-1.0477E-05	-0.28981	-0.0001373	473.7604436272054	65.837	1.1211	62.352	62.13	63.251	-3.4854					47	22	3	0	0	0	0.055627	1	4760	4760		115.49	36.043	1	582970			37541	5782	30966	30992	40942	40942					0.03165247256924886
MATRAGLQV	9	Unmodified	_MATRAGLQV_					0	0	0		ENSG00000155366|ENST00000339083|RHOC;ENST00000473074.1_1_1:113244164-113245337:-|nuORF	ENSG00000155366|ENST00000339083|RHOC	ENSG00000155366|ENST00000339083|RHOC	MULTI-MATCH	OvCa9_classI_Rep2	2		2	473.760569	945.506586	0.59218	0.00028055	-1.06	-0.00050218	-0.4678	-0.00022162	473.7600940941133	65.194	1.0165	62.469	62.076	63.092	-2.7245	0.058471	-0.00056064	NaN	115.49	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120060			37542	5782	30966	30992							0.03165247256924886
MATSYFGK	8	Unmodified	_MATSYFGK_					0	0	0		ENST00000557349.5_3_17:15341430-15450444:-|nuORF;ENSG00000175106|ENST00000518321|TVP23C;ENSG00000171928|ENST00000307767|TVP23B	ENST00000557349.5_3_17:15341430-15450444:-|nuORF	ENST00000557349.5_3_17:15341430-15450444:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	452.71710205078125	2	452.715296	903.416039	-0.049401	-2.2364E-05	3.1093	0.0014076	3.0599	0.0013853	452.71657848562944	70.472	1.992	66.991	66.639	68.631	-3.4812					90	40	4	0	0	0	0.58851	1	5345	5345		66.429	3.123	1	992930			37543	7249	30967	30993	40943	40943					-0.039532217913460954
MATYSMTFC	9	Oxidation (M)	_MATYSM(Oxidation (M))TFC_		M(0.109)ATYSM(0.891)TFC		M(-9.1)ATYSM(9.1)TFC	0	0	1			REV__ENST00000227507.2_1_11:69467885-69468137:+|nuORF	REV__ENST00000227507.2_1_11:69467885-69468137:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	535.7051391601562	2	535.703214	1069.39187	0.075248	4.031E-05	2.0449	0.0010954	2.1201	0.0011357	535.7046923108967	32.378	2.337	32.378	32.154	34.491	0					100	47	6	0	0	0	0.44294	1	1426	1426		47.916	15.961	2	5207200	+		37544	23772	30968	30994	40944	40944		552			-0.1400456633155045
MAVTFDKVYV	10	Unmodified	_MAVTFDKVYV_					0	0	0		ENSG00000172247|ENST00000302514|C1QTNF4	ENSG00000172247|ENST00000302514|C1QTNF4	ENSG00000172247|ENST00000302514|C1QTNF4	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.8035278320312	2	586.804642	1171.59473	-6.8597	-0.0040253	4.2108	0.0024709	-2.649	-0.0015544	586.8069299890403	160.36	3.1265	158.75	158.28	161.4	-1.61					144	76	3	0	0	0	0.71192	1	15883	15883		29.15	8.2026	1	162470			37545	7283	30969	30995	40945	40945					0.015798230568634608
MAVVLASLIY	10	Unmodified	_MAVVLASLIY_					0	0	0		nc|ENSG00000185664|P40967-4|PMEL;nc|ENSG00000185664|P40967-5|PMEL;ENSG00000185664|ENST00000548747|PMEL;nc|ENSG00000185664|P40967-2|PMEL;nc|ENSG00000185664|P40967-3|PMEL	nc|ENSG00000185664|P40967-4|PMEL	nc|ENSG00000185664|P40967-4|PMEL	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3104248046875	2	540.312103	1078.60965	-2.0627	-0.0011145	-4.4327	-0.002395	-6.4954	-0.0035095	540.3096376945349	119.42	3.6472	118.08	117.68	121.33	-1.3444					173	70	5	0	0	0	0.41846	1	11189	11189		65.803	9.3694	1	472280			37546	8273	30970	30996	40946	40946					0.07349314924863393
MAYLYQHNP	9	Unmodified	_MAYLYQHNP_					0	0	0			REV__ENSG00000114554|ENST00000393409|PLXNA1	REV__ENSG00000114554|ENST00000393409|PLXNA1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	568.845458984375	2	568.763309	1135.51206	0.76988	0.00043788	0.76857	0.00043713	1.5384	0.00087501	568.7637575723987	122.93	0.99192	121.56	121.26	122.25	-1.3666					29	19	2	0	0	0	0.027448	1	11635	11635		53.351	24.202	1	19066	+		37547	18192	30971	30997	40947	40947					-0.05027073951282546
MCACYLFLF	9	Unmodified	_MCACYLFLF_					0	0	0			REV__ENST00000546663.1_1_12:51863410-51865314:+|nuORF	REV__ENST00000546663.1_1_12:51863410-51865314:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.3334350585938	2	555.744685	1109.47482	2.2968	0.0012764	-3.9817	-0.0022128	-1.6849	-0.00093636	555.7419837900974	136.99	0.43173	136.99	136.77	137.21	0					10	8	2	0	0	0	0.02744	1	15963	15963		49.211	5.5847	1	21546	+		37548	16685	30972	30998	40948	40948					-0.07554204812913667
MCALKIVQP	9	Unmodified	_MCALKIVQP_					0	0	0			REV__nc|ENSG00000182652|Q8NH05|OR4Q3	REV__nc|ENSG00000182652|Q8NH05|OR4Q3	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.82830810546875	2	501.777373	1001.54019	-1.0046	-0.00050409	-0.73474	-0.00036868	-1.7394	-0.00087277	501.77692245717725	74.181	1.1571	72.21	71.535	72.692	-1.9711					37	21	2	0	0	0	0.027449	1	6041	6041		31.955	0	1	73972	+		37549	22308	30973	30999	40949	40949					0.03948532704464469
MCCGSACY	8	Unmodified	_MCCGSACY_					0	0	0			REV__ENST00000367204.5_1_1:204095493-204095874:+|nuORF	REV__ENST00000367204.5_1_1:204095493-204095874:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	419.198974609375	2	419.123545	836.232537	-2.2803	-0.00095571	-2.6284	-0.0011016	-4.9086	-0.0020573	419.1230410724576	49.987	0.20733	46.846	46.715	46.922	-3.1416					5	3	2	0	0	0	0.028476	1	2851	2851		9.4706	1.2393	1	12621	+		37550	24892	30974	31000	40950	40950					-0.1921297816054448
MCCMCTLKPL	10	Unmodified	_MCCMCTLKPL_					0	0	0			REV__nc|ENSG00000183826|Q96Q07-3|BTBD9	REV__nc|ENSG00000183826|Q96Q07-3|BTBD9	MULTI-MSMS	OvCa99_classI_Rep5	1	571.7476806640625	2	571.748587	1141.48262	1.1051	0.00063185	-3.0679	-0.0017541	-1.9628	-0.0011222	571.746755987732	109.45	1.2032	109.45	109.11	110.31	0					62	26	3	0	0	0	0.37436	1	12412	12412		71.877	3.0906	1	6373600	+		37551	22388	30975	31001	40951	40951					-0.0824613687927922
MCEECCFEEV	10	Unmodified	_MCEECCFEEV_					0	0	0			REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4	REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4	MULTI-SECPEP	OvCa99_classI_Rep5	1	611.2659912109375	2	611.200178	1220.3858	2.9251	0.0017878	3.9843	0.0024352	6.9094	0.0042231	611.2025978935998	86.49	0.2476	86.49	86.431	86.679	0					8	5	2	0	0	0	0.027334	1	9130	9130		11.511	0	1	146030	+		37552	20019	30976	31002	40952	40952					-0.21557452625393125
MCFLSLPRTTK	11	Unmodified	_MCFLSLPRTTK_					0	0	0		ENST00000567239.5_1_16:69681305-69687170:+|nuORF	ENST00000567239.5_1_16:69681305-69687170:+|nuORF	ENST00000567239.5_1_16:69681305-69687170:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	432.22308349609375	3	432.898276	1295.673	0.97439	0.00042181	1.9173	0.00083002	2.8917	0.0012518	432.8992463093962	64.398	0.48754	60.923	60.637	61.125	-3.475					13	9	2	0	0	0	0.025995	1	4558	4558		12.957	0	1	20231			37553	13858	30977	31003	40953	40953					0.03698932370457442
MCHLMWLV	8	Unmodified	_MCHLMWLV_					0	0	0			REV__ENST00000460219.2_1_6:36937722-36937803:-|nuORF	REV__ENST00000460219.2_1_6:36937722-36937803:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	516.284912109375	2	516.745019	1031.47549	-0.43221	-0.00022334	-0.83038	-0.0004291	-1.2626	-0.00065244	516.7446959167954	57.625	0.74613	54.833	54.526	55.273	-2.7921					23	14	2	0	0	0	0.028476	1	4117	4117		43.626	13.308	1	22327	+		37554	26076	30978	31004	40954	40954					-0.038993653732177336
MCIKLHGVN	9	Unmodified	_MCIKLHGVN_					0	0	0		ENSG00000198642|ENST00000359039|KLHL9	ENSG00000198642|ENST00000359039|KLHL9	ENSG00000198642|ENST00000359039|KLHL9	MULTI-MSMS	OvCa9_classI_Rep3	3	507.7626647949219	2	507.764797	1013.51504	-0.98874	-0.00050205	-2.4156	-0.0012265	-3.4043	-0.0017286	507.76348195987015	116.06	1.5323	115.02	114.7	116.23	-1.0414					85	30	4	0	0	0	0.36502	1	8658	8658		55.504	5.9682	1	238760			37555	8839	30979	31005	40955	40955					0.008824779018823392
MCKHRKLNAV	10	Unmodified	_MCKHRKLNAV_					0	0	0		ENSG00000171714|ENST00000324559|ANO5	ENSG00000171714|ENST00000324559|ANO5	ENSG00000171714|ENST00000324559|ANO5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	599.8677368164062	2	600.328627	1198.6427	1.4786	0.00088767	0.75307	0.00045209	2.2317	0.0013398	600.3289936966669	84.594	0.90485	81.931	81.639	82.544	-2.6629					57	18	4	0	0	0	0.027021	1	7055	7055		15.642	0	1	341850			37556	7226	30980	31006	40956	40956					0.05132618495940733
MCKMADQTLF	10	Unmodified	_MCKMADQTLF_					0	0	0		nc|ENSG00000116833|O00482-4|NR5A2;nc|ENSG00000116833|O00482-2|NR5A2;ENSG00000116833|ENST00000367362|NR5A2	nc|ENSG00000116833|O00482-4|NR5A2	nc|ENSG00000116833|O00482-4|NR5A2	MULTI-MSMS	OvCa9_classI_Rep4_	4	594.2645263671875	2	594.266513	1186.51847	-0.25078	-0.00014903	-3.4358	-0.0020418	-3.6866	-0.0021908	594.2643845141944	99.362	1.3843	97.036	96.743	98.128	-2.3253					73	26	4	0	0	0	0.50999	1	8866	8866		52.937	1.6012	1	541610			37557	3213	30981	31007	40957	40957					-0.06732640106429244
MCKVGLKFQ	9	Unmodified	_MCKVGLKFQ_					0	0	0			REV__ENSG00000140406|ENST00000267984|TLNRD1	REV__ENSG00000140406|ENST00000267984|TLNRD1	MULTI-MSMS	OvCa9_classI_Rep2	2	527.2780151367188	2	527.282823	1052.55109	-1.0628	-0.00056039	-0.039322	-2.0734E-05	-1.1021	-0.00058112	527.2826541808121	56.719	1.6865	53.915	53.374	55.06	-2.804					115	33	5	0	0	0	0.36502	1	3990	3990		55.504	6.0627	1	682000	+		37558	19670	30982	31008	40958	40958					0.026919350787693475
MCLITVILL	9	Unmodified	_MCLITVILL_					0	0	0		tr|A0A553SQV7|A0A553SQV7_NIACILipoproteinOS=NialliacirculansOX=1397GN=CEQ21_07375PE=4SV=1	tr|A0A553SQV7|A0A553SQV7_NIACILipoproteinOS=NialliacirculansOX=1397GN=CEQ21_07375PE=4SV=1	tr|A0A553SQV7|A0A553SQV7_NIACILipoproteinOS=NialliacirculansOX=1397GN=CEQ21_07375PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	509.8028564453125	2	509.805599	1017.59665	-1.3099	-0.00066782	-2.4611	-0.0012547	-3.771	-0.0019225	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.65476	1	11111	11111		25.45	3.4903	1	99460			37559	34203	30983	31009	40959	40959					0.08855160541122586
MCLSNLKEDF	10	Unmodified	_MCLSNLKEDF_					0	0	0			REV__ENST00000534521.5_1_11:111612322-111631898:-|nuORF	REV__ENST00000534521.5_1_11:111612322-111631898:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	600.272216796875	2	600.275392	1198.53623	-4.8728	-0.002925	-0.67204	-0.00040341	-5.5448	-0.0033284	600.2748840186918	159.86	2.843	158.53	158.01	160.85	-1.3316					169	56	5	0	0	0	0.762	1	13924	13924		23.523	3.5259	1	277240	+		37560	19469	30984	31010	40960	40960					-0.05509601579933587
MCPFRMASH	9	Unmodified	_MCPFRMASH_					0	0	0		ENST00000599317.1_1_19:40185105-40185282:+|nuORF	ENST00000599317.1_1_19:40185105-40185282:+|nuORF	ENST00000599317.1_1_19:40185105-40185282:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	540.2893676757812	2	540.232807	1078.45106	-1.5355	-0.00082953	3.5139	0.0018983	1.9784	0.0010688	540.2345958514982	85.992	1.8807	84.502	83.653	85.534	-1.4906					76	36	3	0	0	0	0.027462	1	7404	7404		10.866	0	1	63579			37561	14207	30985	31011	40961	40961					-0.08502625526716656
MCRPQPALQS	10	Unmodified	_MCRPQPALQS_					0	0	0		ENSG00000012171|ENST00000616701|SEMA3B;nc|ENSG00000012171|Q13214-2|SEMA3B;ENST00000419007.5_1_3:50313561-50314134:+|nuORF	ENSG00000012171|ENST00000616701|SEMA3B	ENSG00000012171|ENST00000616701|SEMA3B	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.758544921875	2	565.775893	1129.53723	2.1427	0.0012123	2.4062	0.0013614	4.5489	0.0025737	565.7771331134911	90.588	0.55267	90.588	90.346	90.899	0					22	13	2	0	0	0	0.026891	1	9710	9710		31.53	0	1	941050			37562	972	30986	31012	40962	40962					-0.022353424203402028
MCSHFAQDLW	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MCSHFAQDLW_					1	0	0		nc|ENSG00000188171|Q68DY1-2|ZNF626;ENSG00000188171|ENST00000601440|ZNF626;nc|ENSG00000105750|Q03923-2|ZNF85;ENSG00000105750|ENST00000328178|ZNF85	nc|ENSG00000188171|Q68DY1-2|ZNF626	nc|ENSG00000188171|Q68DY1-2|ZNF626	MULTI-MSMS	OvCa99_classI_Rep5	1	640.266845703125	2	640.265358	1278.51616	2.0374	0.0013045	-0.11166	-7.1495E-05	1.9257	0.001233	640.2652146426591	125.78	1.1994	125.78	125.49	126.69	0					57	25	3	0	0	0	0.46756	1	14540	14540		58.782	12.81	1	453960			37563	2495	30987	31013	40963	40963					-0.11195352519871449
MCSKLRER	8	Unmodified	_MCSKLRER_					0	0	0			REV__OTOF|p.Y1215Mfs*57|1|0.35|ENSG00000115155|chr2:26473222-26473223|-/CTCAT|frameshift_variant;REV__nc|ENSG00000115155|Q9HC10-4|OTOF	REV__OTOF|p.Y1215Mfs*57|1|0.35|ENSG00000115155|chr2:26473222-26473223|-/CTCAT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	511.76611328125	2	511.765329	1021.5161	-0.66008	-0.00033781	3.288	0.0016827	2.6279	0.0013449	511.7669290807932	57.251	1.1919	54.459	53.981	55.173	-2.792					66	23	6	0	0	0	0.66057	1	4080	4080		51.335	4.8787	1	176010	+		37564	18221;28809	30988	31014	40964	40964					0.006206922708088314
MCSVRVVWR	9	Unmodified	_MCSVRVVWR_					0	0	0		nc|ENSG00000099954|Q9BXF3-2|CECR2;nc|ENSG00000099954|Q9BXF3|CECR2	nc|ENSG00000099954|Q9BXF3-2|CECR2	nc|ENSG00000099954|Q9BXF3-2|CECR2	MULTI-MSMS	OvCa99_classI_Rep5	1	568.2968139648438	2	568.296796	1134.57904	1.7776	0.0010102	-2.6027	-0.0014791	-0.8251	-0.0004689	568.2953313517885	118.71	0.75622	118.71	118.44	119.19	0					46	15	5	0	0	0	0.50149	1	13598	13598		42.396	1.618	1	1255400			37565	14923	30989	31015	40965	40965					0.017132580588395285
MCVAVGSAALV	11	Unmodified	_MCVAVGSAALV_					0	0	0		nc|ENSG00000114646|O95196-3|CSPG5;ENSG00000114646|ENST00000264723|CSPG5;nc|ENSG00000114646|O95196|CSPG5	nc|ENSG00000114646|O95196-3|CSPG5	nc|ENSG00000114646|O95196-3|CSPG5	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.25482177734375	2	510.764463	1019.51437	2.6307	0.0013436	-1.7574	-0.00089761	0.87327	0.00044604	510.76338038631474	75.584	0.55373	75.584	75.482	76.036	0					17	13	2	0	0	0	0.025853	1	7542	7542		14.865	0	1	679840			37566	3030	30990	31016	40966	40966					0.005396384621803918
MCYRRLGAV	9	Unmodified	_MCYRRLGAV_					0	0	0			REV__sp|P16788|UL97_HCMVASerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL97PE=1SV=1	REV__sp|P16788|UL97_HCMVASerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL97PE=1SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.8619384765625	2	534.775696	1067.53684	1.8104	0.00096813	-3.7478	-0.0020042	-1.9374	-0.0010361	534.7734991782493	112.63	0.44659	112.63	112.39	112.83	0					21	9	3	0	0	0	0.027425	1	12817	12817		60.294	10.852	1	159800	+		37567	29434	30991	31017	40967	40967					0.005772826504653494
MCYYGNKKG	9	Unmodified	_MCYYGNKKG_					0	0	0			REV__nc|ENSG00000204120|Q6Y7W6-3|GIGYF2	REV__nc|ENSG00000204120|Q6Y7W6-3|GIGYF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.314453125	2	532.238612	1062.46267	1.8339	0.00097607	-3.0156	-0.001605	-1.1817	-0.00062894	532.237204126673	117.27	0.46756	117.27	117.04	117.51	0					18	9	3	0	0	0	0.027425	1	13442	13442		60.294	29.79	1	93474	+		37568	29099	30992	31018	40968	40968					-0.06606105231730908
MDALNRNQL	9	Unmodified	_MDALNRNQL_					0	0	0		PHLDB1|p.I9L|1|0.11|ENSG00000019144|chr11:118613861-118613861|A/T|missense_variant	PHLDB1|p.I9L|1|0.11|ENSG00000019144|chr11:118613861-118613861|A/T|missense_variant	PHLDB1|p.I9L|1|0.11|ENSG00000019144|chr11:118613861-118613861|A/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.275390625	2	537.771665	1073.52878	2.6362	0.0014177	-4.3556	-0.0023423	-1.7194	-0.00092463	537.7697049698422	98.976	0.51168	98.976	98.683	99.195	0					18	12	2	0	0	0	0.027462	1	10946	10946		32.812	0	1	788890			37569	15496	30993	31019	40969	40969					-0.0050457306531370705
MDARQVHLN	9	Unmodified	_MDARQVHLN_					0	0	0			REV__ENSG00000101193|ENST00000266069|GID8	REV__ENSG00000101193|ENST00000266069|GID8	MULTI-MSMS	OvCa99_classI_Rep5	1	542.2766723632812	2	542.271832	1082.52911	1.8865	0.001023	-0.49716	-0.0002696	1.3893	0.00075339	542.2714443924443	117.45	0.65921	117.45	117.18	117.84	0					36	13	5	0	0	0	0.27001	1	13445	13445		66.429	6.311	1	765960	+		37570	17478	30994	31020	40970	40970					-0.00885153345461731
MDARQVHLN	9	Unmodified	_MDARQVHLN_					0	0	0			REV__ENSG00000101193|ENST00000266069|GID8	REV__ENSG00000101193|ENST00000266069|GID8	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.271832	1082.52911	-1.7065	-0.00092541	3.5827	0.0019428	1.8761	0.0010174	542.2736403057326	117.47	0.89295	117.34	117.06	117.96	-0.12868	0.086534	0.0037373	NaN	66.429	46	17	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59801	+		37571	17478	30994	31020							-0.00885153345461731
MDARQVHLN	9	Unmodified	_MDARQVHLN_					0	0	0			REV__ENSG00000101193|ENST00000266069|GID8	REV__ENSG00000101193|ENST00000266069|GID8	MULTI-MATCH	OvCa9_classI_Rep3	3		2	542.271832	1082.52911	0.019655	1.0658E-05	0.53444	0.00028981	0.5541	0.00030047	542.2721484932786	118.18	0.69413	117.15	116.93	117.63	-1.0324	-0.10304	0.00043137	NaN	66.429	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62844	+		37572	17478	30994	31020							-0.00885153345461731
MDARQVHLN	9	Unmodified	_MDARQVHLN_					0	0	0			REV__ENSG00000101193|ENST00000266069|GID8	REV__ENSG00000101193|ENST00000266069|GID8	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	542.271832	1082.52911	-1.777	-0.0009636	3.9861	0.0021616	2.2092	0.001198	542.2740518001399	118.42	0.8426	117.08	116.84	117.68	-1.3444	-0.17965	0.0041749	NaN	66.429	29	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68972	+		37573	17478	30994	31020							-0.00885153345461731
MDASLISLIE	10	Unmodified	_MDASLISLIE_					0	0	0		ENSG00000148840|ENST00000278070|PPRC1	ENSG00000148840|ENST00000278070|PPRC1	ENSG00000148840|ENST00000278070|PPRC1	MULTI-MSMS	OvCa9_classI_Rep3	3	546.2847900390625	2	546.286282	1090.55801	-1.7842	-0.00097466	1.4803	0.00080868	-0.30384	-0.00016598	546.2868719902328	137.72	1.1662	136.63	136.24	137.41	-1.0858					55	23	3	0	0	0	0.66721	1	11283	11283		34.173	2.6427	1	134560			37574	5427	30995	31021	40971	40971					0.01635526440304602
MDAYSSNQT	9	Unmodified	_MDAYSSNQT_					0	0	0		HNF1B|p.D390Qfs*6|1|0.87|ENSG00000275410|chr17:37710531-37710541|TGGCCTGGGTC/-|frameshift_variant;nc|ENSG00000275410|P35680-3|HNF1B;HNF1B|p.L396Sfs*7|1|0.07|ENSG00000275410|chr17:37710523-37710523|G/-|frameshift_variant;ENSG00000275410|ENST00000617811|HNF1B;nc|ENSG00000275410|P35680-4|HNF1B;nc|ENSG00000275410|P35680-2|HNF1B	HNF1B|p.D390Qfs*6|1|0.87|ENSG00000275410|chr17:37710531-37710541|TGGCCTGGGTC/-|frameshift_variant	HNF1B|p.D390Qfs*6|1|0.87|ENSG00000275410|chr17:37710531-37710541|TGGCCTGGGTC/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7861022949219	2	508.703114	1015.39167	-0.41735	-0.00021231	1.2089	0.00061499	0.79158	0.00040268	508.70355124080436	68.422	0.41587	68.422	68.233	68.649	0					20	9	3	0	0	0	0.027462	1	6434	6434		20.947	0	1	701800			37575	9571	30996	31022	40972	40972					-0.11540526735541334
MDCKNLFVV	9	Unmodified	_MDCKNLFVV_					0	0	0			REV__tr|A0A553SHA6|A0A553SHA6_NIACIElongationfactorTuOS=NialliacirculansOX=1397GN=tufPE=3SV=1	REV__tr|A0A553SHA6|A0A553SHA6_NIACIElongationfactorTuOS=NialliacirculansOX=1397GN=tufPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.7860717773438	2	534.764463	1067.51437	2.3731	0.0012691	-1.3463	-0.00071993	1.0268	0.00054912	534.7636966622789	76.18	0.36799	76.18	75.956	76.324	0					15	8	2	0	0	0	0.027462	1	7603	7603		37.159	26.294	1	397110	+		37576	29786	30997	31023	40973	40973					-0.01668361537826968
MDDEYINN	8	Unmodified	_MDDEYINN_					0	0	0		tr|A0A7D6ZYS4|A0A7D6ZYS4_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_17565PE=4SV=1	tr|A0A7D6ZYS4|A0A7D6ZYS4_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_17565PE=4SV=1	tr|A0A7D6ZYS4|A0A7D6ZYS4_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_17565PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.7940673828125	2	507.197664	1012.38078	-1.1895	-0.00060333	1.427	0.00072378	0.23749	0.00012045	507.19832516242775	71.406	0.24947	67.95	67.825	68.074	-3.4563					6	4	2	0	0	0	0.028476	1	5453	5453		35.618	6.4687	1	12875			37577	35929	30998	31024	40974	40974					-0.12491929109830835
MDDLLAITGF	10	Unmodified	_MDDLLAITGF_					0	0	0		nc|ENSG00000183704|A6NJY1|SLC9B1P1	nc|ENSG00000183704|A6NJY1|SLC9B1P1	nc|ENSG00000183704|A6NJY1|SLC9B1P1	MULTI-SECPEP	OvCa9_classI_Rep2	2	548.29541015625	2	548.273175	1094.5318	-1.3345	-0.00073169	-1.9278	-0.001057	-3.2623	-0.0017887	548.2715453729168	34.331	0.54396	31.622	31.316	31.86	-2.7097					15	10	2	0	0	0	0.026665	1	1293	1293		42.396	0	1	10187			37578	15213	30999	31025	40975	40975					-0.011687427311699139
MDDNDSQKE	9	Unmodified	_MDDNDSQKE_					0	0	0		ENSG00000166886|ENST00000300131|NAB2;nc|ENSG00000166886|Q15742-3|NAB2;nc|ENSG00000166886|Q15742-2|NAB2	ENSG00000166886|ENST00000300131|NAB2	ENSG00000166886|ENST00000300131|NAB2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.8050537109375	2	541.20876	1080.40297	-1.3762	-0.00074484	-0.85705	-0.00046384	-2.2333	-0.0012087	541.2081713173059	80.449	0.78299	77.739	77.269	78.052	-2.7106					22	15	2	0	0	0	0.027462	1	6556	6556		35.152	5.982	1	17202			37579	6728	31000	31026	40976	40976					-0.13401749432068755
MDDRGIVILMV	11	Unmodified	_MDDRGIVILMV_					0	0	0		ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	ENSG00000039123|ENST00000230640|MTREX	MULTI-MSMS	OvCa9_classI_Rep2	2	631.3349609375	2	631.335784	1260.65701	-0.24957	-0.00015756	1.2527	0.00079085	1.0031	0.00063329	631.3365935308134	66.385	1.4888	63.689	63.418	64.907	-2.6958					83	29	4	0	0	0	0.41331	1	5148	5148		51.193	8.3284	1	672470			37580	1102	31001	31027	40977	40977					0.03711226133555101
MDDVPAPTPA	10	Unmodified	_MDDVPAPTPA_					0	0	0		ENSG00000179943|ENST00000221665|FIZ1	ENSG00000179943|ENST00000221665|FIZ1	ENSG00000179943|ENST00000221665|FIZ1	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.3148193359375	2	507.23405	1012.45355	-0.0083677	-4.2444E-06	-2.5018	-0.001269	-2.5102	-0.0012732	507.23258907939874	105.16	0.31252	105.16	105.04	105.36	0					9	6	2	0	0	0	0.026752	1	11801	11801		35.618	5.3006	1	118260			37581	7849	31002	31028	40978	40978					-0.05218175316417728
MDECQDPSSC	10	Unmodified	_MDECQDPSSC_					0	0	0		ENSG00000049323|ENST00000404816|LTBP1;nc|ENSG00000049323|Q14766-4|LTBP1;nc|ENSG00000049323|Q14766-3|LTBP1;nc|ENSG00000049323|Q14766-2|LTBP1;nc|ENSG00000049323|Q14766-5|LTBP1	ENSG00000049323|ENST00000404816|LTBP1	ENSG00000049323|ENST00000404816|LTBP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.74658203125	2	557.677924	1113.3413	3.508	0.0019563	-1.6006	-0.0008926	1.9074	0.0010637	558.1781166213764	97.433	0.29971	97.433	97.267	97.566	0					13	6	3	0	0	0	0.02725	1	10702	10702		21.96	15.224	1	177770			37582	1168	31003	31029	40979	40979					-0.21084140447192112
MDEEIEGEYN	10	Unmodified	_MDEEIEGEYN_					0	0	0		MYO3B|p.A70G|1|0.31|ENSG00000071909|chr2:170200172-170200172|C/G|missense_variant	MYO3B|p.A70G|1|0.31|ENSG00000071909|chr2:170200172-170200172|C/G|missense_variant	MYO3B|p.A70G|1|0.31|ENSG00000071909|chr2:170200172-170200172|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	614.738525390625	2	614.737351	1227.46015	-2.0204	-0.001242	4.183	0.0025715	2.1627	0.0013295	614.7404537850678	118.46	2.2258	118.31	117.89	120.11	-0.14755					114	44	5	0	0	0	0.62299	1	11398	11398		39.253	2.0937	1	750750			37583	14852	31004	31030	40980	40980					-0.1444832694633078
MDEFKRTQ	8	Unmodified	_MDEFKRTQ_					0	0	0		nc|ENSG00000058085|Q13753-2|LAMC2;ENSG00000058085|ENST00000264144|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	nc|ENSG00000058085|Q13753-2|LAMC2	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.2811889648438	2	527.752941	1053.49133	-0.25971	-0.00013706	1.269	0.00066971	1.0093	0.00053265	527.7532581511485	109.42	2.1264	109.24	107.63	109.76	-0.17236					73	42	3	0	0	0	0.028476	1	10195	10195		42.396	15.703	1	34057			37584	1240	31005	31031	40981	40981					-0.03327664330936386
MDEKSNKLL	9	Unmodified	_MDEKSNKLL_					0	0	0		HS6ST2|p.T343Cfs*20|1|0.27|ENSG00000171004|chrX:132628995-132629014|TGCAGGGATGCTTTCCATGT/-|frameshift_variant;nc|ENSG00000171004|Q96MM7-2|HS6ST2;nc|ENSG00000171004|Q96MM7-3|HS6ST2;nc|ENSG00000171004|Q96MM7|HS6ST2;ENSG00000171004|ENST00000370833|HS6ST2	HS6ST2|p.T343Cfs*20|1|0.27|ENSG00000171004|chrX:132628995-132629014|TGCAGGGATGCTTTCCATGT/-|frameshift_variant	HS6ST2|p.T343Cfs*20|1|0.27|ENSG00000171004|chrX:132628995-132629014|TGCAGGGATGCTTTCCATGT/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.3302612304688	2	539.284074	1076.5536	-0.21796	-0.00011754	-2.6008	-0.0014026	-2.8187	-0.0015201	539.2825032535223	84.128	1.7319	81.867	81.116	82.848	-2.261					73	36	3	0	0	0	0.027426	1	4874	4874		66.429	15.094	1	265960			37585	7161	31006	31032	40982	40982					0.018380620174184514
MDEMALLVD	9	Unmodified	_MDEMALLVD_					0	0	0			REV__SIK3|p.S1029Vfs*11|1|0.11|ENSG00000160584|chr11:116858236-116858236|T/-|frameshift_variant	REV__SIK3|p.S1029Vfs*11|1|0.11|ENSG00000160584|chr11:116858236-116858236|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.282470703125	2	518.738111	1035.46167	1.0834	0.00056199	-2.0145	-0.001045	-0.93116	-0.00048303	519.2385927620534	67.584	0.24717	64.094	63.988	64.235	-3.4902					6	4	2	0	0	0	0.02741	1	4963	4963		82.305	8.3303	1	8856.9	+		37586	20665	31007	31033	40983	40983					-0.054643643912868356
MDEVEEKSK	9	Unmodified	_MDEVEEKSK_					0	0	0		ENST00000361377.8_3_5:52396338-52402968:-|nuORF;ENST00000508922.5_3_5:52394525-52403022:-|nuORF;ENST00000510818.6_2_5:52396298-52403022:-|nuORF;ENST00000502402.5_1_5:52397160-52403022:-|nuORF;ENSG00000164172|ENST00000396954|MOCS2	ENST00000361377.8_3_5:52396338-52402968:-|nuORF	ENST00000361377.8_3_5:52396338-52402968:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.7734985351562	2	547.755346	1093.49614	-0.56287	-0.00030831	2.8929	0.0015846	2.33	0.0012763	547.7568016168635	48.433	0.29803	48.433	48.332	48.63	0					10	6	2	0	0	0	0.027462	1	3540	3540		10.866	0	1	221540			37587	6426	31008	31034	40984	40984					-0.04686824978830373
MDEYIELL	8	Unmodified	_MDEYIELL_					0	0	0		nc|ENSG00000075945|Q92845-4|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.27294921875	2	513.246626	1024.4787	-0.49948	-0.00025636	2.976	0.0015274	2.4765	0.0012711	513.2481557212449	48.211	0.34837	48.211	47.984	48.332	0					10	7	2	0	0	0	0.028476	1	3511	3511		3.9852	0	1	192660			37588	1547	31009	31035	40985	40985					-0.032561205138335936
MDFEQLQPD	9	Unmodified	_MDFEQLQPD_					0	0	0		ENST00000463052.5_1_1:29528537-29543205:-|nuORF;ENST00000490529.5_1_1:29528540-29557400:-|nuORF	ENST00000463052.5_1_1:29528537-29543205:-|nuORF	ENST00000463052.5_1_1:29528537-29543205:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.766845703125	2	561.742239	1121.46993	0.32743	0.00018393	-0.92519	-0.00051972	-0.59776	-0.00033579	562.2431432941336	61.142	1.5503	61.142	60.153	61.704	0					67	36	3	0	0	0	0.027462	1	5401	5401		30.318	0	1	253990			37589	12217	31010	31036	40986	40986					-0.08595094150291516
MDFIALKV	8	Unmodified	_MDFIALKV_					0	0	0			REV__tr|A0A7D7A4Q3|A0A7D7A4Q3_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04090PE=4SV=1	REV__tr|A0A7D7A4Q3|A0A7D7A4Q3_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_04090PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	468.76678466796875	2	468.764789	935.515025	2.2022	0.0010323	0.52709	0.00024708	2.7293	0.0012794	468.76487682219437	118.03	0.59986	118.03	117.79	118.39	0					28	12	3	0	0	0	0.58851	1	13526	13526		66.429	5.4573	1	627100	+		37590	32614	31011	31037	40987	40987					0.04468801173527481
MDFKSPDVVLE	11	Unmodified	_MDFKSPDVVLE_					0	0	0		tr|A0A7D6W2I1|A0A7D6W2I1_9CLOTcysteine-S-conjugatebeta-lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06170PE=3SV=1	tr|A0A7D6W2I1|A0A7D6W2I1_9CLOTcysteine-S-conjugatebeta-lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06170PE=3SV=1	tr|A0A7D6W2I1|A0A7D6W2I1_9CLOTcysteine-S-conjugatebeta-lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06170PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	640.307861328125	2	640.315571	1278.61659	2.1447	0.0013733	-3.347	-0.0021431	-1.2022	-0.0007698	640.3133292833699	129.02	0.97627	129.02	128.65	129.63	0					46	20	3	0	0	0	0.63561	1	14977	14977		41.427	0	1	245450			37591	35432	31012	31038	40988	40988					-0.011574169852110572
MDGGIIRLQI	10	Oxidation (M)	_M(Oxidation (M))DGGIIRLQI_		M(1)DGGIIRLQI		M(58)DGGIIRLQI	0	0	1			REV__nc|ENSG00000100767|O95428-2|PAPLN	REV__nc|ENSG00000100767|O95428-2|PAPLN	MULTI-MSMS	OvCa99_classI_Rep5	1	566.3152465820312	2	566.313166	1130.61178	-0.0014027	-7.9435E-07	0.20575	0.00011652	0.20435	0.00011572	566.313053384896	71.342	0.80471	71.342	71.031	71.835	0					38	17	3	0	0	0	0.47142	2	6906	6906;6911		58.23	10.27	1	4448200	+		37592	17451	31013	31039	40989;40990	40989		409			0.05169743662668225
MDGRDLPGLLE	11	Unmodified	_MDGRDLPGLLE_					0	0	0			REV__nc|ENSG00000143951|O95876-3|WDPCP	REV__nc|ENSG00000143951|O95876-3|WDPCP	MULTI-MSMS	OvCa99_classI_Rep5	1	608.3067016601562	2	608.305538	1214.59652	2.1354	0.001299	0.55275	0.00033624	2.6882	0.0016352	608.3061921958812	137.8	0.47162	137.8	137.54	138.02	0					17	10	2	0	0	0	0.65063	1	16081	16081		40.058	3.6114	1	139840	+		37593	19877	31014	31040	40991	40991					-0.0021916792516094574
MDGSMMTLVMK	11	Unmodified	_MDGSMMTLVMK_					0	0	0			REV__ENST00000463729.1_1_3:119263370-119276575:-|nuORF	REV__ENST00000463729.1_1_3:119263370-119276575:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	622.28076171875	2	622.281305	1242.54806	0.41317	0.00025711	-3.8339	-0.0023858	-3.4207	-0.0021287	622.2788279250977	140.55	0.8725	140.55	140.31	141.18	0					30	17	3	0	0	0	0.36705	1	16410	16410		63.534	3.2399	1	161930	+		37594	18548	31015	31041	40992	40992					-0.06351444152596741
MDHLLAADVL	10	Unmodified	_MDHLLAADVL_					0	0	0		WDFY3|p.Q3037Rfs*34|1|0.06|ENSG00000163625|chr4:84691725-84691725|T/-|frameshift_variant;WDFY3|p.S3365Qfs*9|1|0.07|ENSG00000163625|chr4:84678973-84678974|-/G|frameshift_variant;nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3	WDFY3|p.Q3037Rfs*34|1|0.06|ENSG00000163625|chr4:84691725-84691725|T/-|frameshift_variant	WDFY3|p.Q3037Rfs*34|1|0.06|ENSG00000163625|chr4:84691725-84691725|T/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.3118286132812	2	549.286617	1096.55868	1.561	0.00085743	-2.9114	-0.0015992	-1.3504	-0.00074174	549.284597647387	126.66	0.40575	126.66	126.46	126.87	0					12	8	2	0	0	0	0.026665	1	14635	14635		34.173	0	1	53898			37595	36302	31016	31042	40993	40993					0.014263658800018675
MDIFPIVIH	9	Unmodified	_MDIFPIVIH_					0	0	0		ENST00000575500.5_2_17:78178032-78182141:+|nuORF;ENSG00000141527|ENST00000648509|CARD14	ENST00000575500.5_2_17:78178032-78182141:+|nuORF	ENST00000575500.5_2_17:78178032-78182141:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	543.3232421875	2	542.79662	1083.57869	0.42374	0.00023001	3.3138	0.0017987	3.7375	0.0020287	542.7979932336881	65.366	1.2053	62.655	62.248	63.453	-2.7102					50	23	3	0	0	0	0.027417	1	5010	5010		55.504	31.301	1	71995			37596	13940	31017	31043	40994	40994					0.040241616106186484
MDIFPIVIH	9	Unmodified	_MDIFPIVIH_					0	0	0		ENST00000575500.5_2_17:78178032-78182141:+|nuORF;ENSG00000141527|ENST00000648509|CARD14	ENST00000575500.5_2_17:78178032-78182141:+|nuORF	ENST00000575500.5_2_17:78178032-78182141:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	542.79662	1083.57869	0.11661	6.3296E-05	5.202	0.0028236	5.3186	0.0028869	543.3010962006731	62.807	0.43748	62.807	62.621	63.058	0	0.081228	0.00082776	NaN	55.504	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262090			37597	13940	31017	31043							0.040241616106186484
MDIIKKIN	8	Unmodified	_MDIIKKIN_					0	0	0		ENSG00000131013|ENST00000253329|PPIL4	ENSG00000131013|ENST00000253329|PPIL4	ENSG00000131013|ENST00000253329|PPIL4	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.78839111328125	2	487.788795	973.563038	3.5562	0.0017347	-0.73408	-0.00035808	2.8221	0.0013766	487.7882512057077	132.82	4.8462	131.32	130.38	135.22	-1.5015					236	97	4	0	0	0	0.68714	1	12776	12776		45.952	3.4775	1	143240			37598	4034	31018	31044	40995	40995					0.07519875093578321
MDIKTVVVFV	10	Unmodified	_MDIKTVVVFV_					0	0	0			REV__ENSG00000100226|ENST00000216044|GTPBP1	REV__ENSG00000100226|ENST00000216044|GTPBP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.804931640625	2	575.83066	1149.64677	1.9256	0.0011088	3.4184	0.0019684	5.344	0.0030772	575.8324347224816	85.757	0.88879	85.757	85.462	86.35	0					50	21	3	0	0	0	0.027088	1	9085	9085		19.997	0	1	735310	+		37599	17383	31019	31045	40996	40996					0.07792986470622054
MDIKVLIVD	9	Unmodified	_MDIKVLIVD_					0	0	0		tr|A0A7D7AC52|A0A7D7AC52_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17815PE=4SV=1	tr|A0A7D7AC52|A0A7D7AC52_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17815PE=4SV=1	tr|A0A7D7AC52|A0A7D7AC52_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17815PE=4SV=1	MSMS	OvCa9_classI_Rep4_	4	523.3052368164062	2	523.301736	1044.58892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.51	1	138.01	137.51	138.51	-1.4952								0	0	0	0.17613	1	13599	13599		40.058	0.80534	1				37600	36222	31020	31046	40997	40997					0.06840724545213561
MDILLKVGY	9	Unmodified	_MDILLKVGY_					0	0	0			REV__nc|ENSG00000152128|Q8TC26-3|TMEM163	REV__nc|ENSG00000152128|Q8TC26-3|TMEM163	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.2800903320312	2	526.296453	1050.57835	2.0796	0.0010945	3.6138	0.0019019	5.6934	0.0029964	526.2984296958408	76.183	0.60462	76.183	75.913	76.518	0					30	14	3	0	0	0	0.027462	1	7645	7645		51.335	10.557	1	757370	+		37601	20272	31021	31047	40998	40998					0.055087418907760366
MDIPLDLS	8	Unmodified	_MDIPLDLS_					0	0	0		ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;KLHDC10-TGIF1|1|fusion;nc|ENSG00000177426|Q15583|TGIF1;nc|ENSG00000177426|Q15583-4|TGIF1	ENSG00000177426|ENST00000343820|TGIF1	ENSG00000177426|ENST00000343820|TGIF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	452.23016357421875	2	452.228236	902.44192	-0.2886	-0.00013051	4.2446	0.0019195	3.956	0.001789	452.23011189825104	43.096	1.5922	40.089	39.801	41.393	-3.0074					56	30	2	0	0	0	0.2826	1	2035	2035		110.34	9.1257	1	1124600			37602	7679	31022	31048	40999	40999					-0.013203723397509748
MDISKSRHS	9	Unmodified	_MDISKSRHS_					0	0	0			REV__nc|ENSG00000197617|Q7Z5H4|VN1R5	REV__nc|ENSG00000197617|Q7Z5H4|VN1R5	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.296630859375	2	530.76384	1059.51313	2.2411	0.0011895	-3.7609	-0.0019962	-1.5199	-0.00080669	530.7616801264194	108.3	0.6879	108.3	108.11	108.8	0					30	15	3	0	0	0	0.027462	1	12281	12281		31.53	0	1	800220	+		37603	29085	31023	31049	41000	41000					-0.014248595823801224
MDIYDTQTL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MDIYDTQTL_					1	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	571.2567138671875	2	571.257722	1140.50089	0.3424	0.0001956	0.11773	6.7256E-05	0.46014	0.00026286	571.2574568892977	161.94	0.61279	161.94	161.61	162.23	0					31	11	3	0	0	0	0.3076	1	18996	18996		62.107	12.666	1	158790			37604	3744	31024	31050	41001	41001					-0.06373940836056136
MDKCIHDR	8	Unmodified	_MDKCIHDR_					0	0	0			REV__nc|ENSG00000130816|P26358-3|DNMT1	REV__nc|ENSG00000130816|P26358-3|DNMT1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.7872009277344	2	509.233861	1016.45317	-1.0864	-0.00055321	4.1022	0.002089	3.0159	0.0015358	509.2357982631558	48.546	0.9894	45.438	45.244	46.233	-3.1077					43	18	4	0	0	0	0.028476	1	2703	2703		40.573	5.3719	1	173180	+		37605	18974	31025	31051	41002	41002					-0.05439873517252636
MDKGRKGAK	9	Unmodified	_MDKGRKGAK_					0	0	0			REV__nc|ENSG00000112494|Q86WB7-2|UNC93A	REV__nc|ENSG00000112494|Q86WB7-2|UNC93A	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.7829895019531	2	495.779293	989.544034	-1.0728	-0.00053187	4.2495	0.0021068	3.1767	0.001575	495.7812739834416	44.548	2.2506	41.51	40.762	43.013	-3.0385					117	43	4	0	0	0	0.38529	1	2203	2203		53.351	5.4358	1	1208700	+		37606	18104	31026	31052	41003	41003					0.04884338522538201
MDKIWWRLWLI	11	Unmodified	_MDKIWWRLWLI_					0	0	0			REV__LRRC4C|p.S313R|1|0.07|ENSG00000148948|chr11:40115354-40115354|G/C|missense_variant	REV__LRRC4C|p.S313R|1|0.07|ENSG00000148948|chr11:40115354-40115354|G/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.2998657226562	3	520.623364	1558.84826	-1.1749	-0.00061165	-3.879	-0.0020195	-5.0538	-0.0026311	520.621477908265	71.241	0.44632	67.785	67.628	68.074	-3.4563					15	8	2	0	0	0	0.026472	1	5420	5420		5.1424	0	1	38264	+		37607	28628	31027	31053	41004	41004					0.09119095226992613
MDKKEMIR	8	Unmodified	_MDKKEMIR_					0	0	0		tr|A0A553SSX0|A0A553SSX0_NIACIAminoacidABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_03755PE=4SV=1	tr|A0A553SSX0|A0A553SSX0_NIACIAminoacidABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_03755PE=4SV=1	tr|A0A553SSX0|A0A553SSX0_NIACIAminoacidABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_03755PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.2938842773438	2	525.775362	1049.53617	-0.80578	-0.00042366	3.7212	0.0019565	2.9155	0.0015329	525.7770293776806	102.05	0.52286	99.853	99.573	100.1	-2.1994					14	9	2	0	0	0	0.028476	1	9158	9158		24.203	5.8783	1	8975.1			37608	34429	31028	31054	41005	41005					0.013384432107386601
MDKKEMIR	8	Unmodified	_MDKKEMIR_					0	0	0		tr|A0A553SSX0|A0A553SSX0_NIACIAminoacidABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_03755PE=4SV=1	tr|A0A553SSX0|A0A553SSX0_NIACIAminoacidABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_03755PE=4SV=1	tr|A0A553SSX0|A0A553SSX0_NIACIAminoacidABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_03755PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	525.775362	1049.53617	-1.1067	-0.0005819	2.6306	0.0013831	1.5239	0.00080122	525.7769755331321	100.67	0.34788	99.837	99.707	100.06	-0.83052	-0.0080497	-0.00070018	NaN	31.955	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7438			37609	34429	31028	31054							0.013384432107386601
MDKNPDSPD	9	Unmodified	_MDKNPDSPD_					0	0	0			REV__SRPK2|p.K153Qfs*3|1|0.22|ENSG00000135250|chr7:105167396-105167402|AATCTTG/-|frameshift_variant	REV__SRPK2|p.K153Qfs*3|1|0.22|ENSG00000135250|chr7:105167396-105167402|AATCTTG/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.29144287109375	2	509.710939	1017.40732	1.292	0.00065856	-1.3452	-0.00068567	-0.053176	-2.7104E-05	509.7100828688776	98.343	0.38261	98.343	98.079	98.461	0					14	8	2	0	0	0	0.027462	1	10825	10825		35.152	0	1	278710	+		37610	19267	31029	31055	41006	41006					-0.10068240218504343
MDKVTTVFN	9	Unmodified	_MDKVTTVFN_					0	0	0		SBF2|p.L1514Ffs*17|1|0.21|ENSG00000133812|chr11:9795861-9795862|-/TTGGGGATGTTGCCTGGACCTTGGAA|frameshift_variant;ENSG00000133812|ENST00000256190|SBF2;ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2;ENST00000526353.1_1_11:9983413-9985421:-|nuORF	SBF2|p.L1514Ffs*17|1|0.21|ENSG00000133812|chr11:9795861-9795862|-/TTGGGGATGTTGCCTGGACCTTGGAA|frameshift_variant	SBF2|p.L1514Ffs*17|1|0.21|ENSG00000133812|chr11:9795861-9795862|-/TTGGGGATGTTGCCTGGACCTTGGAA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.7911987304688	2	527.765517	1053.51648	1.8337	0.00096778	-2.6593	-0.0014035	-0.82554	-0.00043569	527.7639087372821	92.645	0.75189	92.645	92.174	92.926	0					31	17	3	0	0	0	0.02744	1	10032	10032		62.107	0	1	614390			37611	4238	31030	31056	41007	41007					-0.008136095283589384
MDLAILKIE	9	Unmodified	_MDLAILKIE_					0	0	0			REV__tr|A0A553SM17|A0A553SM17_NIACIHADfamilyphosphataseOS=NialliacirculansOX=1397GN=CEQ21_21680PE=4SV=1	REV__tr|A0A553SM17|A0A553SM17_NIACIHADfamilyphosphataseOS=NialliacirculansOX=1397GN=CEQ21_21680PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.30029296875	2	523.301736	1044.58892	1.8914	0.00098979	1.3681	0.00071593	3.2595	0.0017057	523.302318918471	136.41	2.7906	134.87	133.96	136.75	-1.5437					120	58	3	0	0	0	0.38529	1	13297	13297		53.351	2.016	1	37992	+		37612	30288	31031	31057	41008	41008					0.06840724545213561
MDLEVPVL	8	Unmodified	_MDLEVPVL_					0	0	0		nc|ENSG00000151948|Q96MS3-2|GLT1D1;ENSG00000151948|ENST00000442111|GLT1D1	nc|ENSG00000151948|Q96MS3-2|GLT1D1	nc|ENSG00000151948|Q96MS3-2|GLT1D1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	459.2463684082031	2	458.246429	914.478305	-0.13572	-6.2194E-05	3.8434	0.0017612	3.7077	0.001699	458.24818203613665	62.225	0.39019	58.767	58.523	58.913	-3.4577					9	7	2	0	0	0	0.028476	1	4301	4301		39.021	8.5179	1	16559			37613	5597	31032	31058	41009	41009					0.017645045569793183
MDLFRMSF	8	Unmodified	_MDLFRMSF_					0	0	0		ENST00000395770.3_1_5:96322264-96322300:+|nuORF	ENST00000395770.3_1_5:96322264-96322300:+|nuORF	ENST00000395770.3_1_5:96322264-96322300:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.2797241210938	2	523.743531	1045.47251	-0.87609	-0.00045885	3.5196	0.0018434	2.6435	0.0013845	523.7454976823931	76.952	1.108	74.053	73.73	74.838	-2.8998					35	22	3	0	0	0	0.028476	1	6178	6178		11.511	0	1	62033			37614	11299	31033	31059	41010	41010					-0.048409172263518485
MDLHNTPE	8	Unmodified	_MDLHNTPE_					0	0	0			REV__nc|ENSG00000161204|Q9NUQ8-2|ABCF3	REV__nc|ENSG00000161204|Q9NUQ8-2|ABCF3	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.2417907714844	2	478.710742	955.406931	-0.3367	-0.00016118	-3.4711	-0.0016617	-3.8078	-0.0018228	478.70893380357415	66.418	0.45177	66.418	66.288	66.739	0					11	10	2	0	0	0	0.028476	1	6181	6181		38.806	0	1	117800	+		37615	20692	31034	31060	41011	41011					-0.07255615147687422
MDLHQTYLKAP	11	Unmodified	_MDLHQTYLKAP_					0	0	0		ENSG00000145386|ENST00000274026|CCNA2	ENSG00000145386|ENST00000274026|CCNA2	ENSG00000145386|ENST00000274026|CCNA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	439.7601013183594	3	439.560429	1315.65946	3.6783	0.0016168	1.6142	0.00070953	5.2925	0.0023264	439.56103717711017	86.358	1.5977	86.358	86.073	87.671	0					93	38	4	0	0	0	0.026145	1	9070	9070		12.957	9.3384	1	4707900			37616	5220	31035	31061	41012	41012					0.014253978628630648
MDLLFHVT	8	Unmodified	_MDLLFHVT_					0	0	0			REV__ENST00000472678.1_1_2:61258678-61258789:+|nuORF	REV__ENST00000472678.1_1_2:61258678-61258789:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.29766845703125	2	488.252046	974.489538	-0.58768	-0.00028694	4.3785	0.0021378	3.7908	0.0018509	488.25400451495796	55.238	0.8291	55.238	54.935	55.764	0					28	19	2	0	0	0	0.028476	1	4549	4549		25.45	0	1	1237700	+		37617	26316	31036	31062	41013	41013					0.0012732665111343522
MDLMKRRSCTV	11	Oxidation (M)	_M(Oxidation (M))DLMKRRSCTV_		M(1)DLMKRRSCTV		M(36)DLM(-36)KRRSCTV	0	0	1		ENST00000590156.5_1_18:43668092-43668176:-|nuORF;ENST00000433223.2_9:43400313-43400445:+|nuORF	ENST00000590156.5_1_18:43668092-43668176:-|nuORF	ENST00000590156.5_1_18:43668092-43668176:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	452.8924560546875	3	452.557925	1354.65195	2.8452	0.0012876	-2.1204	-0.0009596	0.72482	0.00032802	452.5568676327155	86.314	0.68738	86.314	86.033	86.72	0					41	16	3	0	0	0	0.51772	1	9098	9098		52.167	15.85	2	1469900			37618	11826	31037	31063	41014	41014		326			-0.01119401000732978
MDLQLEWH	8	Unmodified	_MDLQLEWH_					0	0	0			REV__MSTA_dup8488|chr7:73072363-73072749:+|1.884769565612237|0.2091665475579687|3.17|420.0|18|2|anti-sense	REV__MSTA_dup8488|chr7:73072363-73072749:+|1.884769565612237|0.2091665475579687|3.17|420.0|18|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.3088989257812	2	536.250034	1070.48552	1.632	0.00087517	1.7881	0.00095886	3.4201	0.001834	536.2511274316025	136.18	0.58441	134.64	134.45	135.03	-1.5436					16	11	2	0	0	0	0.028476	1	13191	13191		51.335	4.569	1	8629.5	+		37619	28682	31038	31064	41015	41015					-0.04690762842596996
MDLRDFYLL	9	Oxidation (M)	_M(Oxidation (M))DLRDFYLL_		M(1)DLRDFYLL		M(55)DLRDFYLL	0	0	1		ENSG00000184226|ENST00000377865|PCDH9;nc|ENSG00000184226|Q9HC56-2|PCDH9	ENSG00000184226|ENST00000377865|PCDH9	ENSG00000184226|ENST00000377865|PCDH9	MULTI-MSMS	OvCa99_classI_Rep5	1	601.3056030273438	2	601.299724	1200.5849	1.4821	0.00089119	3.4413	0.0020692	4.9234	0.0029604	601.30219782033	149.77	2.5731	149.77	149.4	151.97	0					182	51	8	0	0	0	0.37135	1	17607	17607		54.776	6.8607	1	11852000			37620	8138	31039	31065	41016	41016		249			-0.007373649485089118
MDLTYINMRS	10	Unmodified	_MDLTYINMRS_					0	0	0		tr|A0A553SIK4|A0A553SIK4_NIACISugartransferaseOS=NialliacirculansOX=1397GN=CEQ21_15040PE=3SV=1	tr|A0A553SIK4|A0A553SIK4_NIACISugartransferaseOS=NialliacirculansOX=1397GN=CEQ21_15040PE=3SV=1	tr|A0A553SIK4|A0A553SIK4_NIACISugartransferaseOS=NialliacirculansOX=1397GN=CEQ21_15040PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	621.8211669921875	2	622.294116	1242.57368	0.52247	0.00032513	4.3185	0.0026874	4.8409	0.0030125	622.2967389045335	140.08	0.52528	140.08	139.83	140.35	0					14	10	2	0	0	0	0.026714	1	16368	16368		28.081	0	1	28156			37621	33391	31040	31066	41017	41017					-0.03790510314320272
MDLVQIVLF	9	Unmodified	_MDLVQIVLF_					0	0	0		tr|A0A7D6ZZI8|A0A7D6ZZI8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06405PE=4SV=1	tr|A0A7D6ZZI8|A0A7D6ZZI8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06405PE=4SV=1	tr|A0A7D6ZZI8|A0A7D6ZZI8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06405PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	539.30322265625	2	539.304278	1076.594	2.0278	0.0010936	-1.8875	-0.0010179	0.14038	7.5706E-05	539.3027963438448	92.829	0.92002	92.829	92.301	93.221	0					41	21	3	0	0	0	0.24951	1	10046	10046		68.787	5.4806	1	724100			37622	35962	31041	31067	41018	41018					0.05877028407803664
MDMDNYND	8	Unmodified	_MDMDNYND_					0	0	0			REV__tr|A0A7D6VSP3|A0A7D6VSP3_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_17540PE=4SV=1	REV__tr|A0A7D6VSP3|A0A7D6VSP3_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_17540PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.30133056640625	2	509.16805	1016.32155	1.5128	0.00077029	-2.6421	-0.0013453	-1.1293	-0.00057501	509.16744170846886	88.013	1.8196	86.619	85.978	87.797	-1.3935					94	36	4	0	0	0	0.028476	1	7738	7738		54.776	1.8396	1	238720	+		37623	31528	31042	31068	41019	41019					-0.18596148395670298
MDMDNYND	8	Unmodified	_MDMDNYND_					0	0	0			REV__tr|A0A7D6VSP3|A0A7D6VSP3_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_17540PE=4SV=1	REV__tr|A0A7D6VSP3|A0A7D6VSP3_9CLOTHADfamilyphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_17540PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.3032531738281	2	509.16805	1016.32155	-0.58251	-0.0002966	0.74376	0.0003787	0.16125	8.2104E-05	509.16851310267214	89.073	1.5381	86.47	86.034	87.573	-2.6027					82	30	4	0	0	0	0.028476	1	7658	7658		51.193	17.02	1	415270	+		37624	31528	31042	31068	41020	41020					-0.18596148395670298
MDMRVPAQL	9	2 Oxidation (M)	_M(Oxidation (M))DM(Oxidation (M))RVPAQL_		M(1)DM(1)RVPAQL		M(67)DM(67)RVPAQL	0	0	2		nc|ENSG00000211633|A0A075B6H8|IGKV1D-42;nc|ENSG00000276566|P0DP09|IGKV1-13;nc|ENSG00000251546|P04432|IGKV1D-39;nc|ENSG00000243466|P01602|IGKV1-5;nc|ENSG00000243290|A0A0C4DH73|IGKV1-12;nc|ENSG00000242766|A0A075B6S4|IGKV1D-17;nc|ENSG00000242076|P01594|IGKV1-33;nc|ENSG00000241755|A0A0C4DH69|IGKV1-9;nc|ENSG00000240382|P01599|IGKV1-17;nc|ENSG00000239855|A0A0C4DH72|IGKV1-6;nc|ENSG00000239819|A0A087WSZ0|IGKV1D-8;nc|ENSG00000244575|A0A075B6S5|IGKV1-27;nc|ENSG00000250036|P0DSN7|IGKV1D-37	nc|ENSG00000211633|A0A075B6H8|IGKV1D-42;nc|ENSG00000244575|A0A075B6S5|IGKV1-27	nc|ENSG00000211633|A0A075B6H8|IGKV1D-42	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.7637939453125	2	546.762452	1091.51035	-1.0695	-0.00058477	1.2561	0.00068677	0.18656	0.000102	546.7629135388668	69.465	1.6607	65.984	65.614	67.275	-3.4812					66	33	3	0	0	0	0.26076	1	5201	5201		67.494	12.717	1	572420			37625	15285;15344	31043	31069	41021	41021		374;375			-0.031744510315093066
MDNVCHTL	8	Unmodified	_MDNVCHTL_					0	0	0		ENSG00000136378|ENST00000388820|ADAMTS7;ENST00000568712.1_1_15:79063704-79103562:-|nuORF	ENSG00000136378|ENST00000388820|ADAMTS7	ENSG00000136378|ENST00000388820|ADAMTS7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.7985534667969	2	466.701863	931.389172	0.00037465	1.7485E-07	-1.1948	-0.00055763	-1.1945	-0.00055746	466.7013042383185	78.954	0.33247	76.203	76.038	76.37	-2.7514					10	6	2	0	0	0	0.028476	1	6376	6376		12.959	0	1	18527			37626	4486	31044	31070	41022	41022					-0.07926653674189765
MDPDVPLQT	9	Unmodified	_MDPDVPLQT_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.8143615722656	2	508.241875	1014.4692	0.42988	0.00021848	-0.73346	-0.00037277	-0.30358	-0.00015429	508.7408336779848	97.67	0.15146	95.292	95.216	95.368	-2.3786					4	2	2	0	0	0	0.027026	1	8667	8667		85.161	13.283	1	10084			37627	2511	31045	31071	41023	41023					-0.03745888799369368
MDPELHQLV	9	Unmodified	_MDPELHQLV_					0	0	0			REV__ENST00000585416.1_1_19:55738551-55739001:-|nuORF	REV__ENST00000585416.1_1_19:55738551-55739001:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.8063354492188	2	541.270967	1080.52738	0.45998	0.00024897	3.8721	0.0020958	4.3321	0.0023448	541.2731207637485	84.872	0.48854	82.226	82.072	82.561	-2.6463					13	9	2	0	0	0	0.027447	1	7160	7160		56.721	7.2795	1	55325	+		37628	22157	31046	31072	41024	41024					-0.00966207154078802
MDPELHQLV	9	Unmodified	_MDPELHQLV_					0	0	0			REV__ENST00000585416.1_1_19:55738551-55739001:-|nuORF	REV__ENST00000585416.1_1_19:55738551-55739001:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	541.270967	1080.52738	2.2232	0.0012033	6.9037	0.0037368	9.1269	0.0049401	541.2741612950294	82.467	0.51488	82.467	82.222	82.736	0	0.15005	0.0023116	NaN	56.721	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	432380	+		37629	22157	31046	31072							-0.00966207154078802
MDPELHQLV	9	Unmodified	_MDPELHQLV_					0	0	0			REV__ENST00000585416.1_1_19:55738551-55739001:-|nuORF	REV__ENST00000585416.1_1_19:55738551-55739001:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	541.270967	1080.52738	-1.3281	-0.00071886	5.7348	0.0031041	4.4067	0.0023852	541.2737517968201	83.889	0.77431	82.342	82.023	82.797	-1.5462	0.024961	0.0010462	NaN	56.721	23	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27777	+		37630	22157	31046	31072							-0.00966207154078802
MDPELHQLV	9	Unmodified	_MDPELHQLV_					0	0	0			REV__ENST00000585416.1_1_19:55738551-55739001:-|nuORF	REV__ENST00000585416.1_1_19:55738551-55739001:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	541.270967	1080.52738	-0.57427	-0.00031083	4.4058	0.0023847	3.8315	0.0020739	541.2732138991611	84.495	0.57605	82.234	81.881	82.457	-2.261	-0.08327	-0.00039259	NaN	56.721	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68203	+		37631	22157	31046	31072							-0.00966207154078802
MDPNYARVN	9	Unmodified	_MDPNYARVN_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.3045043945312	2	540.250566	1078.48658	1.1657	0.00062976	-3.5221	-0.0019028	-2.3565	-0.0012731	540.2490961253043	103.19	0.45643	103.19	103.01	103.47	0					14	10	2	0	0	0	0.027457	1	11526	11526		32.751	0	1	155950			37632	3153	31047	31073	41025	41025					-0.04952548473693241
MDRFFFIF	8	Unmodified	_MDRFFFIF_					0	0	0			REV__tr|A0A553SHJ7|A0A553SHJ7_NIACIDNApolymeraseIIIsubunitgamma/tauOS=NialliacirculansOX=1397GN=dnaXPE=3SV=1	REV__tr|A0A553SHJ7|A0A553SHJ7_NIACIDNApolymeraseIIIsubunitgamma/tauOS=NialliacirculansOX=1397GN=dnaXPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.281982421875	2	561.775688	1121.53682	1.8572	0.0010433	0.4299	0.00024151	2.2871	0.0012848	562.2773616177562	149.72	1.0367	149.72	149.21	150.24	0					53	20	4	0	0	0	0.028476	1	17517	17517		63.306	3.0123	1	169910	+		37633	29808	31048	31074	41026	41026					-0.019083940778955366
MDRFTVAVFI	10	Unmodified	_MDRFTVAVFI_					0	0	0		nc|ENSG00000169682|Q9H2V7-3|SPNS1	nc|ENSG00000169682|Q9H2V7-3|SPNS1	nc|ENSG00000169682|Q9H2V7-3|SPNS1	MULTI-MSMS	OvCa99_classI_Rep5	1	400.21710205078125	3	400.214482	1197.62162	1.2836	0.00051373	1.6742	0.00067006	2.9579	0.0011838	400.21512792141783	60.407	0.6205	60.407	60.195	60.816	0					31	14	3	0	0	0	0.57535	1	5276	5276		45.022	0.64502	1	1088300			37634	15174	31049	31075	41027	41027					0.030709316680713528
MDRHISTGGF	10	Unmodified	_MDRHISTGGF_					0	0	0			REV__ENSG00000183655|ENST00000337975|KLHL25	REV__ENSG00000183655|ENST00000337975|KLHL25	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.8052978515625	2	560.76384	1119.51313	0.13137	7.3666E-05	3.4692	0.0019454	3.6006	0.0020191	560.7658477421264	67.861	1.4105	67.861	67.528	68.939	0					74	34	3	0	0	0	0.026802	1	6376	6376		26.693	0	1	1252100	+		37635	22375	31050	31076	41028	41028					-0.04184859582369427
MDRRLLAL	8	Oxidation (M)	_M(Oxidation (M))DRRLLAL_		M(1)DRRLLAL		M(94)DRRLLAL	0	0	1		ENSG00000113384|ENST00000265070|GOLPH3	ENSG00000113384|ENST00000265070|GOLPH3	ENSG00000113384|ENST00000265070|GOLPH3	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.759033203125	2	502.289494	1002.56443	-1.1021	-0.00055356	-3.1663	-0.0015904	-4.2684	-0.002144	502.28794984499353	69.425	1.0452	66.805	66.217	67.262	-2.6203					29	20	2	0	0	0	0.028476	1	5467	5467		94.006	14.555	1	30927			37636	2970	31051	31077	41029	41029		94			0.06325509182352107
MDRWIKKI	8	Unmodified	_MDRWIKKI_					0	0	0		ENSG00000102128|ENST00000218249|RAB40AL;ENSG00000172476|ENST00000304236|RAB40A	ENSG00000102128|ENST00000218249|RAB40AL	ENSG00000102128|ENST00000218249|RAB40AL	MULTI-MSMS	OvCa9_classI_Rep2	2	545.31640625	2	545.315512	1088.61647	-1.7047	-0.0009296	3.5971	0.0019615	1.8924	0.0010319	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.74229	1	14223	14223		30.504	1.3541	1	202430			37637	2223	31052	31078	41030	41030					0.07570672596102668
MDSGRKNRPP	10	Unmodified	_MDSGRKNRPP_					0	0	0		nc|ENSG00000152782|Q8TE04|PANK1;ENSG00000152782|ENST00000307534|PANK1	nc|ENSG00000152782|Q8TE04|PANK1	nc|ENSG00000152782|Q8TE04|PANK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.3232421875	2	579.295839	1156.57712	-0.82009	-0.00047508	2.4101	0.0013962	1.59	0.0009211	579.7986347898735	65.423	0.39639	65.423	65.19	65.586	0					16	9	3	0	0	0	0.026849	1	6018	6018		32.812	4.7309	1	255950			37638	15101	31053	31079	41031	41031					0.00509920574586431
MDSNGLAD	8	Unmodified	_MDSNGLAD_					0	0	0		ENST00000549913.6_1_12:113307544-113334582:+|nuORF;nc|ENSG00000089169|Q9Y2J0-2|RPH3A;ENSG00000089169|ENST00000389385|RPH3A	ENST00000549913.6_1_12:113307544-113334582:+|nuORF	ENST00000549913.6_1_12:113307544-113334582:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	411.6694030761719	2	411.668543	821.322533	-5.8322	-0.0024009	3.1372	0.0012915	-2.695	-0.0011094	411.6698486035822	163.63	0.75046	162	161.73	162.48	-1.6336					34	20	2	0	0	0	0.74971	1	16155	16155		26.796	2.5934	1	29045			37639	1814	31054	31080	41032	41032					-0.09527565964447149
MDTASHSLVL	10	Unmodified	_MDTASHSLVL_					0	0	0		ENSG00000089775|ENST00000608382|ZBTB25	ENSG00000089775|ENST00000608382|ZBTB25	ENSG00000089775|ENST00000608382|ZBTB25	MULTI-MSMS	OvCa99_classI_Rep5	1	537.272216796875	2	537.268424	1072.5223	2.6082	0.0014013	0.04334	2.3285E-05	2.6516	0.0014246	537.2684896382216	88.872	4.5522	88.872	88.003	92.555	0					290	110	5	0	0	0	0.48198	1	9407	9407		56.721	1.9447	1	72679000			37640	1828	31055	31081	41033	41033					-0.011065110166782688
MDTELHPVMD	10	Unmodified	_MDTELHPVMD_					0	0	0			REV__ENSG00000011243|ENST00000397410|AKAP8L	REV__ENSG00000011243|ENST00000397410|AKAP8L	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.815673828125	2	594.257199	1186.49985	1.5451	0.00091821	1.5898	0.00094474	3.1349	0.0018629	594.2585641228341	79.328	0.23396	79.328	79.16	79.394	0					7	5	2	0	0	0	0.026915	1	8092	8092		20.947	0	1	275150	+		37641	16485	31056	31082	41034	41034					-0.08594478476629774
MDTLVSVAAR	10	Unmodified	_MDTLVSVAAR_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;nc|ENSG00000074755|O43149-3|ZZEF1;ENST00000574474.1_1_17:3979912-4046255:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.8090209960938	2	531.784241	1061.55393	-1.2445	-0.00066182	-0.73411	-0.00039039	-1.9786	-0.0010522	531.7835834316788	79.353	0.42415	76.602	76.514	76.938	-2.7514					14	8	2	0	0	0	0.026956	1	6463	6463		19.997	0	1	46721			37642	1517	31057	31083	41035	41035					0.025614817372343168
MDTLVSVAAR	10	Unmodified	_MDTLVSVAAR_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;nc|ENSG00000074755|O43149-3|ZZEF1;ENST00000574474.1_1_17:3979912-4046255:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	531.784241	1061.55393	-1.077	-0.00057274	-1.5027	-0.00079912	-2.5797	-0.0013719	531.7828544386268	78.119	0.52509	76.38	75.987	76.512	-1.7398	-0.059603	-0.00030148	NaN	24.519	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14575			37643	1517	31057	31083							0.025614817372343168
MDTPLPLDTR	10	Unmodified	_MDTPLPLDTR_					0	0	0		nc|ENSG00000109684|Q7Z7G1-2|CLNK;nc|ENSG00000109684|Q7Z7G1-3|CLNK;ENSG00000109684|ENST00000226951|CLNK	nc|ENSG00000109684|Q7Z7G1-2|CLNK	nc|ENSG00000109684|Q7Z7G1-2|CLNK	MULTI-MSMS	OvCa9_classI_Rep2	2	579.79296875	2	579.794806	1157.57506	-2.51	-0.0014553	-0.72033	-0.00041765	-3.2304	-0.0018729	579.7942897257548	144.91	1.0446	144.69	144.39	145.43	-0.22696					50	20	4	0	0	0	0.71173	1	14586	14586		29.17	0.020503	1	108970			37644	2726	31058	31084	41036	41036					0.002574470461013334
MDTRIVAQM	9	Unmodified	_MDTRIVAQM_					0	0	0			REV__nc|ENSG00000136830|Q96TA1-2|NIBAN2	REV__nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-MSMS	OvCa9_classI_Rep3	3	532.7623901367188	2	532.764994	1063.51544	0.13559	7.2236E-05	-3.3819	-0.0018018	-3.2463	-0.0017295	532.7630671747069	118.53	2.6747	117.51	115.36	118.03	-1.0271					111	53	3	0	0	0	0.53483	1	8958	8958		39.253	6.4404	1	168650	+		37645	19410	31059	31085	41037	41037					-0.013781471689298996
MDTVMIVTY	9	Unmodified	_MDTVMIVTY_					0	0	0			REV__tr|A0A7D6ZVF4|A0A7D6ZVF4_9CLOTNickel-dependentlactateracemaseOS=ClostridiumintestinaleOX=36845GN=larAPE=4SV=1	REV__tr|A0A7D6ZVF4|A0A7D6ZVF4_9CLOTNickel-dependentlactateracemaseOS=ClostridiumintestinaleOX=36845GN=larAPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.759521484375	2	536.756304	1071.49805	2.0497	0.0011002	4.2731	0.0022936	6.3228	0.0033938	536.75844880598	85.49	1.0589	85.49	85.252	86.311	0					63	25	5	0	0	0	0.16524	1	8964	8964		82.305	2.3658	1	5634800	+		37646	32250	31060	31086	41038	41038					-0.03483487494554538
MDTVMIVTY	9	Unmodified	_MDTVMIVTY_					0	0	0			REV__tr|A0A7D6ZVF4|A0A7D6ZVF4_9CLOTNickel-dependentlactateracemaseOS=ClostridiumintestinaleOX=36845GN=larAPE=4SV=1	REV__tr|A0A7D6ZVF4|A0A7D6ZVF4_9CLOTNickel-dependentlactateracemaseOS=ClostridiumintestinaleOX=36845GN=larAPE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	536.756304	1071.49805	2.0497	0.0011002	4.2731	0.0022936	6.3228	0.0033938	536.75844880598	85.49	1.0589	85.49	85.252	86.311	0	0	0	NaN	82.305	63	25	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5634800	+		37647	32250	31060	31086							-0.03483487494554538
MDVGSTRSES	10	Unmodified	_MDVGSTRSES_					0	0	0		CCDC141|p.P707Lfs*7|1|0.03|ENSG00000163492|chr2:178871512-178871513|-/CAAA|frameshift_variant;CCDC141|p.K1308Efs*10|1|0.17|ENSG00000163492|chr2:178837296-178837297|TT/-|frameshift_variant;nc|ENSG00000163492|Q6ZP82-1|CCDC141;ENSG00000163492|ENST00000443758|CCDC141	CCDC141|p.P707Lfs*7|1|0.03|ENSG00000163492|chr2:178871512-178871513|-/CAAA|frameshift_variant	CCDC141|p.P707Lfs*7|1|0.03|ENSG00000163492|chr2:178871512-178871513|-/CAAA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.7860717773438	2	534.734945	1067.45534	2.4219	0.0012951	0.49305	0.00026365	2.9149	0.0015587	534.7348159941093	76.057	0.36694	76.057	75.913	76.28	0					18	8	3	0	0	0	0.026891	1	7603	7603		39.253	0.44669	1	754630			37648	193	31061	31087	41039	41039					-0.07569166298435448
MDVLHEKK	8	Unmodified	_MDVLHEKK_					0	0	0			REV__SAMD9|p.E1289Dfs*17|1|0.04|ENSG00000205413|chr7:93102231-93102232|-/AG|frameshift_variant	REV__SAMD9|p.E1289Dfs*17|1|0.04|ENSG00000205413|chr7:93102231-93102232|-/AG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.8055419921875	2	500.268227	998.521901	-0.9821	-0.00049132	-2.2013	-0.0011012	-3.1834	-0.0015926	500.2669664880809	90.82	0.81229	88.74	88.413	89.225	-2.0805					27	15	2	0	0	0	0.028476	1	5683	5683		37.159	3.6435	1	38644	+		37649	23216	31062	31088	41040	41040					0.02258114054109228
MDVPATPLSAY	11	Unmodified	_MDVPATPLSAY_					0	0	0		nc|ENSG00000033327|Q9UQC2-2|GAB2;ENSG00000033327|ENST00000361507|GAB2	nc|ENSG00000033327|Q9UQC2-2|GAB2	nc|ENSG00000033327|Q9UQC2-2|GAB2	MULTI-MSMS	OvCa9_classI_Rep2	2	582.7861328125	2	582.783907	1163.55326	0.38439	0.00022402	2.5017	0.001458	2.8861	0.001682	582.7852424232326	125.44	1.0402	125.2	124.91	125.95	-0.2359					45	20	3	0	0	0	0.56722	1	12216	12216		47.657	3.2801	1	124070			37650	1075	31063	31089	41041	41041					-0.02197357702470981
MDVRKFVLK	9	Unmodified	_MDVRKFVLK_					0	0	0		ENST00000587994.5_1_18:47322196-47323846:-|nuORF	ENST00000587994.5_1_18:47322196-47323846:-|nuORF	ENST00000587994.5_1_18:47322196-47323846:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.3493041992188	2	568.336444	1134.65834	-1.2633	-0.00071799	-2.447	-0.0013907	-3.7103	-0.0021087	568.3349421284668	91.832	0.827	89.808	89.534	90.361	-2.0241					39	16	3	0	0	0	0.027462	1	5770	5770		32.812	10.853	1	235270			37651	14072	31064	31090	41042	41042					0.09639228284618184
MDVYETWPKK	10	Unmodified	_MDVYETWPKK_					0	0	0			REV__ENSG00000144035|ENST00000272425|NAT8	REV__ENSG00000144035|ENST00000272425|NAT8	MULTI-SECPEP	OvCa99_classI_Rep5	1	431.89111328125	3	432.88128	1295.62201	-0.13336	-5.7728E-05	0.54121	0.00023428	0.40785	0.00017655	432.8822045387625	38.173	0.41705	38.173	38.069	38.486	0					11	8	2	0	0	0	0.026819	1	2164	2164		35.178	10.11	1	30285	+		37652	19886	31065	31091	41043	41043					-0.013976934027596144
MDWIVEGNLN	10	Unmodified	_MDWIVEGNLN_					0	0	0			REV__tr|A0A553SQ94|A0A553SQ94_NIACIM15familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_23545PE=4SV=1	REV__tr|A0A553SQ94|A0A553SQ94_NIACIM15familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_23545PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	594.828369140625	2	595.779156	1189.54376	0.30672	0.00018274	0.9912	0.00059054	1.2979	0.00077327	595.7797901527264	77.957	0.24347	75.14	74.922	75.165	-2.8165					5	4	2	0	0	0	0.026714	1	6256	6256		42.864	5.0528	1	27262	+		37653	30615	31066	31092	41044	41044					-0.043431259879525896
MDWLESES	8	Unmodified	_MDWLESES_					0	0	0			REV__nc|ENSG00000106484|Q5EB52-2|MEST	REV__nc|ENSG00000106484|Q5EB52-2|MEST	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.7723693847656	2	498.702583	995.390612	-1.1901	-0.00059348	-2.5595	-0.0012764	-3.7496	-0.0018699	498.701251291372	71.605	0.87766	68.149	67.924	68.802	-3.4563					21	17	2	0	0	0	0.028476	1	5475	5475		25.45	0	1	54298	+		37654	17806	31067	31093	41045	41045					-0.10726741104440407
MDYESDVSD	9	Unmodified	_MDYESDVSD_					0	0	0			REV__ENSG00000170145|ENST00000304987|SIK2	REV__ENSG00000170145|ENST00000304987|SIK2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.3025512695312	2	530.692412	1059.37027	-0.57526	-0.00030529	1.9182	0.001018	1.3429	0.00071266	530.6931373159878	109.72	0.68557	108.12	107.86	108.54	-1.6011					19	12	2	0	0	0	0.027462	1	10085	10085		6.7355	0	1	15488	+		37655	21517	31068	31094	41046	41046					-0.15703956554898468
MDYNFVINV	9	Unmodified	_MDYNFVINV_					0	0	0			REV__ENST00000588692.5_1_19:14519750-14520718:-|nuORF	REV__ENST00000588692.5_1_19:14519750-14520718:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.282470703125	2	557.765517	1113.51648	3.1814	0.0017745	2.6395	0.0014722	5.8209	0.0032467	557.766777684192	115.89	0.69256	115.89	115.63	116.32	0					24	14	3	0	0	0	0.027446	1	13243	13243		42.864	0	1	213500	+		37656	18627	31069	31095	41047	41047					-0.03573609528348243
MDYWKILA	8	Unmodified	_MDYWKILA_					0	0	0		ENSG00000111432|ENST00000229030|FZD10	ENSG00000111432|ENST00000229030|FZD10	ENSG00000111432|ENST00000229030|FZD10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.30908203125	2	520.267696	1038.52084	-0.36074	-0.00018768	2.7671	0.0014397	2.4064	0.001252	520.2682297389916	62.061	0.47143	58.603	58.244	58.715	-3.4577					13	9	2	0	0	0	0.028476	1	4287	4287		40.573	0	1	46691			37657	2826	31070	31096	41048	41048					0.003118996852208511
MEADNGPVFSL	11	Unmodified	_MEADNGPVFSL_					0	0	0			REV__nc|ENSG00000049618|Q8NFD5-1|ARID1B	REV__nc|ENSG00000049618|Q8NFD5-1|ARID1B	MULTI-MSMS	OvCa9_classI_Rep4_	4	590.2677612304688	2	590.271164	1178.52777	-6.4648	-0.003816	2.3051	0.0013606	-4.1597	-0.0024553	590.272448811586	160.41	2.659	158.8	158.24	160.9	-1.6101					174	63	4	0	0	0	0.70142	1	15929	15929		29.17	1.2878	1	264810	+		37658	16677	31071	31097	41049	41049					-0.054348322248642944
MEAGSDENVV	10	Unmodified	_MEAGSDENVV_					0	0	0			REV__tr|A0A553SFT6|A0A553SFT6_NIACIYhgE/Pipdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09460PE=4SV=1	REV__tr|A0A553SFT6|A0A553SFT6_NIACIYhgE/Pipdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09460PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	525.7246704101562	2	525.724046	1049.43354	-0.30415	-0.0001599	-3.0071	-0.0015809	-3.3112	-0.0017408	525.7223503638074	60.84	1.0671	60.84	60.559	61.626	0					62	24	4	0	0	0	0.39172	1	5345	5345		69.628	14.123	1	4681000	+		37659	29621	31072	31098	41050	41050					-0.08919971047021136
MEAHYPGAH	9	Unmodified	_MEAHYPGAH_					0	0	0		ENSG00000184564|ENST00000647374|SLITRK6	ENSG00000184564|ENST00000647374|SLITRK6	ENSG00000184564|ENST00000647374|SLITRK6	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3350524902344	2	506.718901	1011.42325	1.1108	0.00056287	-0.85144	-0.00043144	0.25937	0.00013143	507.219539243139	139.07	0.38983	139.07	138.88	139.27	0					9	7	2	0	0	0	0.027462	1	16217	16217		19.36	1.0356	1	39973			37660	8170	31073	31099	41051	41051					-0.08200489190937787
MEAIKDLHV	9	Unmodified	_MEAIKDLHV_					0	0	0		ENSG00000118369|ENST00000529308|USP35;ENST00000530546.5_1_11:77911190-77917082:+|nuORF;nc|ENSG00000118369|Q9P2H5-2|USP35	ENSG00000118369|ENST00000529308|USP35	ENSG00000118369|ENST00000529308|USP35	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.819580078125	2	528.281334	1054.54812	-0.5794	-0.00030608	0.50466	0.0002666	-0.074734	-3.9481E-05	528.2816237198614	73.347	1.6225	70.947	70.011	71.633	-2.3999					46	30	2	0	0	0	0.027433	1	5968	5968		34.173	1.3601	1	18285			37661	3304	31074	31100	41052	41052					0.023023832255830712
MEAIKDLHV	9	Unmodified	_MEAIKDLHV_					0	0	0		ENSG00000118369|ENST00000529308|USP35;ENST00000530546.5_1_11:77911190-77917082:+|nuORF;nc|ENSG00000118369|Q9P2H5-2|USP35	ENSG00000118369|ENST00000529308|USP35	ENSG00000118369|ENST00000529308|USP35	MULTI-MATCH	OvCa99_classI_Rep5	1		2	528.281334	1054.54812	-0.090749	-4.7941E-05	-5.2958	-0.0027977	-5.3865	-0.0028456	528.7803120534339	70.661	0.46887	70.661	70.408	70.877	0	-0.35613	-0.0061541	NaN	34.173	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	343070			37662	3304	31074	31100							0.023023832255830712
MEAKPIAEIL	10	Unmodified	_MEAKPIAEIL_					0	0	0		tr|A0A7D6VRW9|A0A7D6VRW9_9CLOTNitrogenaseiron-molybdenumcofactorbiosynthesisproteinNifEOS=ClostridiumintestinaleOX=36845GN=nifEPE=3SV=1	tr|A0A7D6VRW9|A0A7D6VRW9_9CLOTNitrogenaseiron-molybdenumcofactorbiosynthesisproteinNifEOS=ClostridiumintestinaleOX=36845GN=nifEPE=3SV=1	tr|A0A7D6VRW9|A0A7D6VRW9_9CLOTNitrogenaseiron-molybdenumcofactorbiosynthesisproteinNifEOS=ClostridiumintestinaleOX=36845GN=nifEPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.8108520507812	2	557.812467	1113.61038	-0.44838	-0.00025011	-2.5256	-0.0014088	-2.974	-0.0016589	557.8109927845255	146.06	1.578	144.62	144.25	145.82	-1.4357					89	30	5	0	0	0	0.52439	1	14362	14362		51.193	1.7511	1	878120			37663	34960	31075	31101	41053	41053					0.05812109573912494
MEALRGVVL	9	Unmodified	_MEALRGVVL_					0	0	0		ENST00000470452.5_1_2:237994547-238002319:+|nuORF	ENST00000470452.5_1_2:237994547-238002319:+|nuORF	ENST00000470452.5_1_2:237994547-238002319:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.2869873046875	2	494.28642	986.558287	1.0873	0.00053743	-1.2009	-0.00059358	-0.11361	-5.6154E-05	494.2857084115825	84.709	2.1185	82.046	81.458	83.577	-2.6629					122	43	4	0	0	0	0.2422	1	7111	7111		69.628	0	1	1920500			37664	12366	31076	31102	41054	41054					0.0644699095081478
MEANRLPFR	9	Unmodified	_MEANRLPFR_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.2967529296875	2	567.29785	1132.58115	2.5275	0.0014339	-3.2774	-0.0018593	-0.74988	-0.0004254	567.2957813300864	129.76	1.238	128.31	127.94	129.18	-1.4565					74	24	4	0	0	0	0.28934	1	12431	12431		64.207	4.089	1	391040	+		37665	20257	31077	31103	41055	41055					0.020160100682915072
MEAPAQLLF	9	Oxidation (M)	_M(Oxidation (M))EAPAQLLF_		M(1)EAPAQLLF		M(51)EAPAQLLF	0	0	1		nc|ENSG00000241351|P04433|IGKV3-11;nc|ENSG00000211632|A0A0A0MRZ8|IGKV3D-11;nc|ENSG00000244437|P01624|IGKV3-15;nc|ENSG00000224041|A0A087WSY6|IGKV3D-15;nc|ENSG00000243063|A0A075B6H7|IGKV3-7	nc|ENSG00000241351|P04433|IGKV3-11;nc|ENSG00000243063|A0A075B6H7|IGKV3-7	nc|ENSG00000241351|P04433|IGKV3-11	MULTI-MSMS	OvCa9_classI_Rep2	2	518.2628784179688	2	518.26261	1034.51067	1.3847	0.00071764	-1.471	-0.00076234	-0.086252	-4.4701E-05	518.2616936757189	128.68	1.5825	128.45	128.13	129.71	-0.22696					76	31	3	0	0	0	0.40667	1	12616	12616		51.335	6.8044	1	418450			37666	15284;15341	31078	31104	41056	41056		373			-0.0052070804001687065
MEAPAQLLF	9	Oxidation (M)	_M(Oxidation (M))EAPAQLLF_		M(1)EAPAQLLF		M(69)EAPAQLLF	0	0	1		nc|ENSG00000241351|P04433|IGKV3-11;nc|ENSG00000211632|A0A0A0MRZ8|IGKV3D-11;nc|ENSG00000244437|P01624|IGKV3-15;nc|ENSG00000224041|A0A087WSY6|IGKV3D-15;nc|ENSG00000243063|A0A075B6H7|IGKV3-7	nc|ENSG00000241351|P04433|IGKV3-11;nc|ENSG00000243063|A0A075B6H7|IGKV3-7	nc|ENSG00000241351|P04433|IGKV3-11	MULTI-MSMS	OvCa9_classI_Rep3	3	518.2619018554688	2	518.26261	1034.51067	1.0127	0.00052487	-1.0401	-0.00053905	-0.027366	-1.4183E-05	518.2618451712167	129.49	1.6325	128.38	127.94	129.57	-1.1121					68	32	4	0	0	0	0.24951	2	10247	10241;10247		68.787	22.02	1	413920			37667	15284;15341	31078	31104	41057;41058	41058		373			-0.0052070804001687065
MEAQKDEIIC	10	Unmodified	_MEAQKDEIIC_					0	0	0		nc|ENSG00000163513|P37173-2|TGFBR2	nc|ENSG00000163513|P37173-2|TGFBR2	nc|ENSG00000163513|P37173-2|TGFBR2	MULTI-MSMS	OvCa9_classI_Rep3	3	590.2672119140625	2	590.272849	1178.53115	-7.705	-0.0045481	0.67006	0.00039552	-7.035	-0.0041526	590.2732006658329	159.89	2.9332	158.56	157.96	160.89	-1.3316					148	58	4	0	0	0	0.6349	1	13914	13914		37.812	0	1	239760			37668	15138	31079	31105	41059	41059					-0.050979054425170034
MEAQRICLS	9	Unmodified	_MEAQRICLS_					0	0	0		AKAP9-CDK14|2|fusion;AKAP9-CDK14|1|fusion;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF	AKAP9-CDK14|2|fusion	AKAP9-CDK14|2|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.8136596679688	2	525.757169	1049.49979	-0.69268	-0.00036418	-3.5681	-0.0018759	-4.2608	-0.0022401	525.7568241431993	96.238	0.35487	93.812	93.609	93.964	-2.4256					9	6	2	0	0	0	0.02744	1	8502	8502		52.937	17.318	1	13089			37669	58	31080	31106	41060	41060					-0.022984336859735777
MEAVFCDF	8	Unmodified	_MEAVFCDF_					0	0	0			REV__ENST00000433165.6_1_6:154727490-154754936:-|nuORF	REV__ENST00000433165.6_1_6:154727490-154754936:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.2468566894531	2	481.193339	960.372125	2.1716	0.001045	-0.71846	-0.00034572	1.4532	0.00069925	481.1928921276068	97.055	0.29865	97.055	96.881	97.18	0					9	6	2	0	0	0	0.028476	1	10651	10651		71.378	8.3995	1	148050	+		37670	25743	31082	31107	41061	41061					-0.10964574280001216
MEAVRQPGGLQ	11	Unmodified	_MEAVRQPGGLQ_					0	0	0			REV__ENSG00000064932|ENST00000361757|SBNO2	REV__ENSG00000064932|ENST00000361757|SBNO2	MULTI-MSMS	OvCa99_classI_Rep5	1	593.3073120117188	2	593.305872	1184.59719	0.98226	0.00058278	1.2643	0.00075014	2.2466	0.0013329	593.3064937099855	153.02	5.598	153.02	152.55	158.15	0					237	114	5	0	0	0	0.25285	1	17905	17905		72.879	6.45	1	2333200	+		37671	16779	31083	31108	41062	41062					0.012276715145617345
MEAYFPTN	8	Unmodified	_MEAYFPTN_					0	0	0			REV__tr|A0A7D6W3F2|A0A7D6W3F2_9CLOTAlanine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=alaSPE=3SV=1	REV__tr|A0A7D6W3F2|A0A7D6W3F2_9CLOTAlanine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=alaSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.2895202636719	2	486.710211	971.405868	-1.2327	-0.00059997	-2.3146	-0.0011265	-3.5473	-0.0017265	486.70897010953024	95.762	0.93878	93.933	93.632	94.571	-1.8286					29	18	2	0	0	0	0.028476	1	6304	6304		60.972	25.354	1	71236	+		37672	31914	31084	31109	41063	41063					-0.0809782951661191
MECFCPPSFP	10	Unmodified	_MECFCPPSFP_					0	0	0		ENSG00000139330|ENST00000266719|KERA	ENSG00000139330|ENST00000266719|KERA	ENSG00000139330|ENST00000266719|KERA	MULTI-MSMS	OvCa99_classI_Rep5	1	579.2264404296875	2	579.226856	1156.43916	1.2864	0.0007451	-2.8298	-0.0016391	-1.5434	-0.000894	579.2251094941048	107.15	0.75737	107.15	106.89	107.65	0					26	17	2	0	0	0	0.3976	1	12072	12072		68.787	19.345	1	1592800			37673	4767	31085	31110	41064	41064					-0.13280287060570117
MECLCAHPP	9	Unmodified	_MECLCAHPP_					0	0	0		nc|ENSG00000158113|Q8N309-2|LRRC43;nc|ENSG00000158113|Q8N309-3|LRRC43;ENSG00000158113|ENST00000339777|LRRC43	nc|ENSG00000158113|Q8N309-2|LRRC43	nc|ENSG00000158113|Q8N309-2|LRRC43	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.7647399902344	2	500.706091	999.397629	-1.3434	-0.00067264	2.1741	0.0010886	0.83076	0.00041596	501.207342418147	127.6	0.24588	126.16	125.94	126.19	-1.4357					5	4	2	0	0	0	0.027449	1	12166	12166		50.025	20.875	1	4031.8			37674	5933	31086	31111	41065	41065					-0.10209423029232312
MEDIEIMLW	9	Unmodified	_MEDIEIMLW_					0	0	0		ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MSMS	OvCa9_classI_Rep4_	4	590.2681884765625	2	590.27486	1178.53517	-6.4648	-0.003816	-3.9577	-0.0023361	-10.422	-0.0061521	590.272448811586	160.41	2.659	158.8	158.24	160.9	-1.6101					174	63	4	0	0	0	0.29717	2	15870	15870;15894		63.306	8.5839	1	264810			37675	9585	31087	31112	41066;41067	41066					-0.046958159488212914
MEDLWVVNC	9	Unmodified	_MEDLWVVNC_					0	0	0			REV__ENSG00000074356|ENST00000389005|NCBP3	REV__ENSG00000074356|ENST00000389005|NCBP3	MULTI-SECPEP	OvCa9_classI_Rep2	2	554.3475952148438	2	554.743728	1107.4729	1.3138	0.00072881	1.4382	0.00079785	2.752	0.0015267	554.7444916344283	112.84	1.8756	112.72	112.13	114.01	-0.12174					51	37	2	0	0	0	0.027462	1	10777	10777		39.253	0	1	25191	+		37676	16949	31088	31113	41068	41068					-0.07653542297157401
MEDPDGLRE	9	Unmodified	_MEDPDGLRE_					0	0	0		nc|ENSG00000135409|Q16671-3|AMHR2	nc|ENSG00000135409|Q16671-3|AMHR2	nc|ENSG00000135409|Q16671-3|AMHR2	MULTI-MSMS	OvCa99_classI_Rep5	1	531.2332763671875	2	531.232039	1060.44952	1.372	0.00072883	2.3448	0.0012456	3.7168	0.0019745	531.2332323783138	123.16	1.0134	123.16	122.95	123.97	0					42	21	3	0	0	0	0.070405	1	14216	14216		107.01	19.253	1	770640			37677	15031	31089	31114	41069	41069					-0.07828264810109431
MEDSRNMF	8	Unmodified	_MEDSRNMF_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10;MYO10|p.A1743V|1|0.27|ENSG00000145555|chr5:16672770-16672770|G/A|missense_variant	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7811889648438	2	515.210052	1028.40555	0.0036355	1.873E-06	-2.9065	-0.0014974	-2.9028	-0.0014956	515.2082295169286	112.47	0.60567	110.96	110.74	111.34	-1.5111					18	11	2	0	0	0	0.028476	1	10433	10433		33.516	0	1	20140			37678	5231	31090	31115	41070	41070					-0.10751572508092977
MEEAKQLVD	9	Unmodified	_MEEAKQLVD_					0	0	0		ENST00000580005.1_1_17:56357276-56358041:-|nuORF;ENSG00000005381|ENST00000225275|MPO;nc|ENSG00000005381|P05164-3|MPO	ENST00000580005.1_1_17:56357276-56358041:-|nuORF	ENST00000580005.1_1_17:56357276-56358041:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	531.7600708007812	2	531.760432	1061.50631	2.1574	0.0011472	-2.7971	-0.0014874	-0.63966	-0.00034014	531.7588318425259	95.262	1.134	95.262	94.992	96.126	0					46	26	4	0	0	0	0.11471	1	10388	10388		93.195	8.0346	1	2074700			37679	853	31091	31116	41071	41071					-0.021982172535899736
MEEAVILPF	9	Unmodified	_MEEAVILPF_					0	0	0		nc|ENSG00000162105|Q9UPX8-4|SHANK2;nc|ENSG00000162105|Q9UPX8-1|SHANK2;ENSG00000162105|ENST00000601538|SHANK2	nc|ENSG00000162105|Q9UPX8-4|SHANK2	nc|ENSG00000162105|Q9UPX8-4|SHANK2	MULTI-MSMS	OvCa99_classI_Rep5	1	524.7754516601562	2	524.772811	1047.53107	3.0062	0.0015776	-3.9111	-0.0020525	-0.90495	-0.00047489	524.7705880086522	97.699	0.72696	97.699	97.479	98.206	0					37	16	3	0	0	0	0.34496	1	10772	10772		57.811	4.4598	1	3281000			37680	6158	31092	31117	41072	41072					0.009204626197742982
MEEERNSKKDN	11	Unmodified	_MEEERNSKKDN_					0	0	0		nc|ENSG00000029153|Q8WYA1-9|BMAL2;nc|ENSG00000029153|Q8WYA1-6|BMAL2;nc|ENSG00000029153|Q8WYA1-8|BMAL2;nc|ENSG00000029153|Q8WYA1-7|BMAL2;nc|ENSG00000029153|Q8WYA1-4|BMAL2;nc|ENSG00000029153|Q8WYA1-3|BMAL2;nc|ENSG00000029153|Q8WYA1-5|BMAL2;nc|ENSG00000029153|Q8WYA1-2|BMAL2;ENSG00000029153|ENST00000266503|BMAL2	nc|ENSG00000029153|Q8WYA1-9|BMAL2	nc|ENSG00000029153|Q8WYA1-9|BMAL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	461.2477111816406	3	460.545507	1378.61469	0.053499	2.4639E-05	0.58366	0.0002688	0.63716	0.00029344	460.8798817978099	65.15	0.31538	65.15	64.955	65.271	0					12	7	3	0	0	0	0.025726	1	5970	5970		10.145	0	1	132220			37681	1061	31093	31118	41073	41073					-0.059470777411206655
MEEFKILND	9	Unmodified	_MEEFKILND_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	569.7775268554688	2	569.776082	1137.53761	-0.081982	-4.6712E-05	-0.25678	-0.0001463	-0.33876	-0.00019302	569.7758241318322	94.47	1.6977	92.001	91.666	93.363	-2.4685					60	33	2	0	0	0	0.28934	1	8298	8298		64.207	0	1	383540			37682	3800	31094	31119	41074	41074					-0.02565644219475871
MEEIANFPV	9	Unmodified	_MEEIANFPV_					0	0	0		nc|ENSG00000130540|Q9BR01-2|SULT4A1;ENSG00000130540|ENST00000330884|SULT4A1	nc|ENSG00000130540|Q9BR01-2|SULT4A1	nc|ENSG00000130540|Q9BR01-2|SULT4A1	MSMS	OvCa99_classI_Rep5	1	525.2490234375	2	525.252243	1048.48993	NaN	NaN	NaN	NaN	NaN	NaN	NaN	60.69	1	60.69	60.19	61.19	0								0	0	0	0.17192	1	5310	5310		45.952	8.1404	1				37683	3993	31095	31120	41075	41075					-0.032372984196854304
MEEIGRISI	9	Unmodified	_MEEIGRISI_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1;ACTN4|p.E678K|1|0.22|ENSG00000130402|chr19:38725745-38725745|G/A|missense_variant;ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;nc|ENSG00000130402|O43707-3|ACTN4	nc|ENSG00000072110|P12814-2|ACTN1;ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	OvCa99_classI_Rep5	1	524.285400390625	2	524.278792	1046.54303	3.048	0.001598	-1.1171	-0.00058565	1.931	0.0010124	524.2780594520781	97.515	0.77048	97.515	97.267	98.037	0					30	17	4	0	0	0	0.12184	1	10709	10709		91.265	8.5147	1	1784300			37684	1464;3986	31096	31121	41076	41076					0.021620793630063417
MEEIRHLDEF	10	Unmodified	_MEEIRHLDEF_					0	0	0		tr|A0A553SR98|A0A553SR98_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00710PE=3SV=1	tr|A0A553SR98|A0A553SR98_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00710PE=3SV=1	tr|A0A553SR98|A0A553SR98_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00710PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	439.7470397949219	3	440.208055	1317.60234	0.46389	0.00020421	-0.36188	-0.0001593	0.10201	4.4904E-05	440.2078866694415	59.596	0.50427	59.596	59.414	59.918	0					23	12	3	0	0	0	0.027117	1	5141	5141		28.081	9.5504	1	742950			37685	34238	31097	31122	41077	41077					-0.043760694135244194
MEEITEIPIEK	11	Unmodified	_MEEITEIPIEK_					0	0	0		tr|A0A553SQL9|A0A553SQL9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07880PE=4SV=1	tr|A0A553SQL9|A0A553SQL9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07880PE=4SV=1	tr|A0A553SQL9|A0A553SQL9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07880PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	444.5661926269531	3	444.563616	1330.66902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.606	1	58.606	58.106	59.106	0								0	0	0	0.18608	1	4991	4991		47.228	0.7709	1				37686	34175	31098	31123	41078	41078					0.01691121357703196
MEELVGLREG	10	Unmodified	_MEELVGLREG_					0	0	0		nc|ENSG00000186510|P51800-2|CLCNKA;nc|ENSG00000186510|P51800-3|CLCNKA;ENSG00000186510|ENST00000331433|CLCNKA	nc|ENSG00000186510|P51800-2|CLCNKA	nc|ENSG00000186510|P51800-2|CLCNKA	MULTI-MSMS	OvCa99_classI_Rep5	1	566.7860107421875	2	566.786981	1131.55941	1.8122	0.0010271	1.5904	0.00090139	3.4026	0.0019285	566.7877677672303	127.25	1.3202	127.25	127.05	128.37	0					81	28	4	0	0	0	0.52439	1	14833	14833		51.193	1.6567	1	2562000			37687	8341	31099	31124	41079	41079					-0.0011083947092629387
MEEPKIEVL	9	Unmodified	_MEEPKIEVL_					0	0	0		ENSG00000198796|ENST00000361673|ALPK2;ENST00000589204.1_1_18:56196243-56204256:-|nuORF	ENSG00000198796|ENST00000361673|ALPK2	ENSG00000198796|ENST00000361673|ALPK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7941284179688	2	544.288825	1086.5631	-1.0672	-0.00058085	3.6525	0.001988	2.5853	0.0014071	544.2902276815679	63.84	0.48406	63.84	63.648	64.132	0					23	11	3	0	0	0	0.027447	1	5803	5803		56.721	1.9447	1	783760			37688	8875	31100	31125	41080	41080					0.023278303029201197
MEEPKIEVL	9	Unmodified	_MEEPKIEVL_					0	0	0		ENSG00000198796|ENST00000361673|ALPK2;ENST00000589204.1_1_18:56196243-56204256:-|nuORF	ENSG00000198796|ENST00000361673|ALPK2	ENSG00000198796|ENST00000361673|ALPK2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	544.288825	1086.5631	-0.058456	-3.1817E-05	2.4464	0.0013315	2.3879	0.0012997	544.2902420019325	67.115	0.54309	63.625	63.295	63.839	-3.4902	-0.10765	-0.00061054	NaN	56.721	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29092			37689	8875	31100	31125							0.023278303029201197
MEERGVSLN	9	Unmodified	_MEERGVSLN_					0	0	0		tr|A0A553SFP8|A0A553SFP8_NIACIDegVfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09245PE=4SV=1	tr|A0A553SFP8|A0A553SFP8_NIACIDegVfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09245PE=4SV=1	tr|A0A553SFP8|A0A553SFP8_NIACIDegVfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09245PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	517.7536010742188	2	517.750398	1033.48624	2.3136	0.0011979	4.0417	0.0020926	6.3553	0.0032905	517.7522869435652	87.899	0.54253	87.899	87.628	88.171	0					30	12	3	0	0	0	0.40818	1	9344	9344		51.193	3.2771	1	2926900			37690	33061	31101	31126	41081	41081					-0.029159681935425397
MEERVTEN	8	Unmodified	_MEERVTEN_					0	0	0			REV__tr|A0A553SMM1|A0A553SMM1_NIACIAlpha-amylaseOS=NialliacirculansOX=1397GN=CEQ21_22720PE=3SV=1	REV__tr|A0A553SMM1|A0A553SMM1_NIACIAlpha-amylaseOS=NialliacirculansOX=1397GN=CEQ21_22720PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	504.2257080078125	2	504.226756	1006.43896	1.1088	0.00055909	-3.9516	-0.0019925	-2.8428	-0.0014334	504.22465304764546	138.94	1.0514	138.94	138.69	139.74	0					53	21	4	0	0	0	0.57734	1	16200	16200		68.787	2.9837	1	387900	+		37691	30347	31102	31127	41082	41082					-0.06400247464546283
MEETIIPD	8	Unmodified	_MEETIIPD_					0	0	0			REV__ENSG00000153339|ENST00000283351|TRAPPC8	REV__ENSG00000153339|ENST00000283351|TRAPPC8	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.22564697265625	2	474.223151	946.431749	0.079133	3.7527E-05	3.1071	0.0014735	3.1862	0.001511	474.2244551142329	87.248	1.103	84.621	84.3	85.403	-2.6269					48	21	3	0	0	0	0.7043	1	7413	7413		42.474	5.3154	1	381950	+		37692	20338	31103	31128	41083	41083					-0.04360980064973319
MEEVEVRSE	9	Unmodified	_MEEVEVRSE_					0	0	0		tr|A0A7D6VS50|A0A7D6VS50_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14560PE=4SV=1	tr|A0A7D6VS50|A0A7D6VS50_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14560PE=4SV=1	tr|A0A7D6VS50|A0A7D6VS50_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14560PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.306884765625	2	554.252971	1106.49139	1.4452	0.00080099	-0.73574	-0.00040779	0.70944	0.00039321	554.252178796638	93.376	0.74775	93.376	93.093	93.841	0					58	17	4	0	0	0	0.027433	1	10127	10127		64.207	0	1	5649400			37693	34987	31104	31129	41084	41084					-0.05759709121571177
MEEVKKFLV	9	Unmodified	_MEEVKKFLV_					0	0	0		KHDRBS1|p.A312Gfs*56|1|0.06|ENSG00000121774|chr1:32037857-32037858|-/G|frameshift_variant;ENST00000307714.12_1_1:32479575-32503673:+|nuORF;nc|ENSG00000121774|Q07666-2|KHDRBS1;ENSG00000121774|ENST00000327300|KHDRBS1;nc|ENSG00000121774|Q07666-3|KHDRBS1	KHDRBS1|p.A312Gfs*56|1|0.06|ENSG00000121774|chr1:32037857-32037858|-/G|frameshift_variant	KHDRBS1|p.A312Gfs*56|1|0.06|ENSG00000121774|chr1:32037857-32037858|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	561.7598876953125	2	561.81501	1121.61547	1.5014	0.0008435	1.7553	0.00098613	3.2566	0.0018296	561.8155790532528	64.77	1.2092	61.285	60.969	62.179	-3.4854					48	24	3	0	0	0	0.027447	1	4588	4588		56.721	5.3856	1	336320			37694	3499	31105	31130	41085	41085					0.05952413436534698
MEEVKKFLV	9	Unmodified	_MEEVKKFLV_					0	0	0		KHDRBS1|p.A312Gfs*56|1|0.06|ENSG00000121774|chr1:32037857-32037858|-/G|frameshift_variant;ENST00000307714.12_1_1:32479575-32503673:+|nuORF;nc|ENSG00000121774|Q07666-2|KHDRBS1;ENSG00000121774|ENST00000327300|KHDRBS1;nc|ENSG00000121774|Q07666-3|KHDRBS1	KHDRBS1|p.A312Gfs*56|1|0.06|ENSG00000121774|chr1:32037857-32037858|-/G|frameshift_variant	KHDRBS1|p.A312Gfs*56|1|0.06|ENSG00000121774|chr1:32037857-32037858|-/G|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	561.81501	1121.61547	-0.43841	-0.00024631	3.389	0.001904	2.9506	0.0016577	561.8168303860139	63.866	1.6279	61.122	60.533	62.161	-2.7444	-0.081338	0.00088296	NaN	56.721	66	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208510			37695	3499	31105	31130							0.05952413436534698
MEFDNDEDGF	10	Unmodified	_MEFDNDEDGF_					0	0	0			REV__tr|A0A553SFN2|A0A553SFN2_NIACIHADfamilyphosphataseOS=NialliacirculansOX=1397GN=CEQ21_09225PE=4SV=1	REV__tr|A0A553SFN2|A0A553SFN2_NIACIHADfamilyphosphataseOS=NialliacirculansOX=1397GN=CEQ21_09225PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	609.79345703125	2	609.716418	1217.41828	1.5511	0.00094573	-0.48831	-0.00029773	1.0628	0.00064801	609.7160337909512	149.54	0.53511	149.54	149.26	149.79	0					12	10	2	0	0	0	0.02717	1	17523	17523		30.318	11.993	1	22571	+		37696	29596	31106	31131	41086	41086					-0.1817288263489445
MEFPTAEVLL	10	Unmodified	_MEFPTAEVLL_					0	0	0		ENSG00000168612|ENST00000372523|ZSWIM1	ENSG00000168612|ENST00000372523|ZSWIM1	ENSG00000168612|ENST00000372523|ZSWIM1	MULTI-MSMS	OvCa99_classI_Rep5	1	575.299072265625	2	575.29665	1148.57875	0.54351	0.00031268	4.0967	0.0023568	4.6402	0.0026695	575.2985918919612	158.87	0.68301	158.87	158.65	159.33	0					25	13	3	0	0	0	0.55359	1	18611	18611		47.657	6.8792	1	126430			37697	6924	31107	31132	41087	41087					0.010401168199678068
MEFRRDAS	8	Unmodified	_MEFRRDAS_					0	0	0		nc|ENSG00000131653|Q6Q0C0-2|TRAF7;ENSG00000131653|ENST00000326181|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.25885009765625	2	506.237458	1010.46036	-0.0326	-1.6503E-05	-0.091625	-4.6384E-05	-0.12423	-6.2887E-05	506.23796252715186	79.991	0.24626	78.296	78.124	78.37	-1.6951					5	4	2	0	0	0	0.028476	1	6727	6727		57.811	22.611	1	5802.1			37698	4081	31108	31133	41088	41088					-0.04444817645173771
MEFSYRVE	8	Unmodified	_MEFSYRVE_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.3004150390625	2	530.742042	1059.46953	2.3788	0.0012625	3.7777	0.002005	6.1566	0.0032676	530.7442765007062	106.19	0.21616	106.19	106.01	106.23	0					6	4	2	0	0	0	0.028476	1	11938	11938		15.642	0	1	63203	+		37699	22791	31109	31134	41089	41089					-0.057824690794859634
MEGDSSGEMIL	11	Unmodified	_MEGDSSGEMIL_					0	0	0		ENST00000378078.4_1_9:35755401-35755560:+|nuORF	ENST00000378078.4_1_9:35755401-35755560:+|nuORF	ENST00000378078.4_1_9:35755401-35755560:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.8151245117188	2	584.746664	1167.47878	0.73145	0.00042771	-3.696	-0.0021612	-2.9646	-0.0017335	584.7444128436945	123.92	1.2327	123.92	123.61	124.84	0					57	26	3	0	0	0	0.02567	1	14312	14312		71.877	11.759	1	689720			37700	11101	31110	31135	41090	41090					-0.09826488576118209
MEGISHKRRV	10	Unmodified	_MEGISHKRRV_					0	0	0		ENSG00000155393|ENST00000299192|HEATR3;nc|ENSG00000155393|Q7Z4Q2-2|HEATR3;nc|ENSG00000155393|Q7Z4Q2-3|HEATR3	ENSG00000155393|ENST00000299192|HEATR3	ENSG00000155393|ENST00000299192|HEATR3	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.8346557617188	2	606.835131	1211.65571	-0.90328	-0.00054814	-3.1477	-0.0019101	-4.051	-0.0024583	606.8329716464679	88.612	1.9421	86.009	85.73	87.672	-2.6027					90	38	3	0	0	0	0.37132	1	7566	7566		69.628	23.676	1	2985500			37701	5783	31111	31136	41091	41091					0.05834772879666161
MEGLEEAEANC	11	Unmodified	_MEGLEEAEANC_					0	0	0		ENSG00000136153|ENST00000377534|LMO7	ENSG00000136153|ENST00000377534|LMO7	ENSG00000136153|ENST00000377534|LMO7	MULTI-SECPEP	OvCa9_classI_Rep2	2	598.31640625	2	598.233921	1194.45329	-0.35231	-0.00021076	2.5002	0.0014957	2.1479	0.0012849	598.2353993727783	107.55	0.52696	107.24	107.07	107.6	-0.30836					20	10	2	0	0	0	0.025638	1	10059	10059		30.318	0	1	29918			37702	4464	31112	31137	41092	41092					-0.1361596309855031
MEGLLVPEET	10	Unmodified	_MEGLLVPEET_					0	0	0		ENSG00000102034|ENST00000308167|ELF4	ENSG00000102034|ENST00000308167|ELF4	ENSG00000102034|ENST00000308167|ELF4	MULTI-SECPEP	OvCa9_classI_Rep2	2	558.3306274414062	2	559.275915	1116.53728	2.2304	0.0012474	4.3304	0.0024219	6.5608	0.0036693	559.2781587569298	88.892	1.677	87.525	86.839	88.516	-1.3676					56	32	3	0	0	0	0.026915	1	7830	7830		35.618	7.736	1	41663			37703	2219	31113	31138	41093	41093					-0.01633063939357271
MEGRVAIIV	9	Unmodified	_MEGRVAIIV_					0	0	0		tr|A0A7D6VWL5|A0A7D6VWL5_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04600PE=3SV=1	tr|A0A7D6VWL5|A0A7D6VWL5_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04600PE=3SV=1	tr|A0A7D6VWL5|A0A7D6VWL5_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04600PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	494.28521728515625	2	494.28642	986.558287	-0.096989	-4.7941E-05	-0.33924	-0.00016768	-0.43623	-0.00021562	494.28606431515385	83.612	2.4718	82.013	81.369	83.841	-1.5988					133	49	4	0	0	0	0.19716	2	7144	7144;7206		76.847	5.5509	1	1379300			37704	35253	31114	31139	41094;41095	41094					0.06446990950826148
MEGRVAIIV	9	Unmodified	_MEGRVAIIV_					0	0	0		tr|A0A7D6VWL5|A0A7D6VWL5_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04600PE=3SV=1	tr|A0A7D6VWL5|A0A7D6VWL5_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04600PE=3SV=1	tr|A0A7D6VWL5|A0A7D6VWL5_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04600PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	494.28759765625	2	494.28642	986.558287	-1.2403	-0.00061306	0.87686	0.00043342	-0.36342	-0.00017964	494.28670132933	84.122	2.6507	81.861	81.346	83.997	-2.261					153	54	4	0	0	0	0.21395	1	4871	4871		73.975	5.1879	1	2419900			37705	35253	31114	31139	41096	41096					0.06446990950826148
MEIAKNFLD	9	Unmodified	_MEIAKNFLD_					0	0	0			REV__ENSG00000173612|ENST00000310357|GPRC6A	REV__ENSG00000173612|ENST00000310357|GPRC6A	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.7822265625	2	540.773342	1079.53213	2.7339	0.0014784	-2.413	-0.0013049	0.32096	0.00017357	540.7723679141861	90.204	0.51611	90.204	90.06	90.577	0					22	12	3	0	0	0	0.027433	1	9702	9702		64.207	9.431	1	446810	+		37706	21790	31115	31140	41097	41097					-0.004453230113085738
MEIEEKLRA	9	Unmodified	_MEIEEKLRA_					0	0	0		ENST00000486954.1_1_7:150139732-150139819:+|nuORF	ENST00000486954.1_1_7:150139732-150139819:+|nuORF	ENST00000486954.1_1_7:150139732-150139819:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	559.79638671875	2	559.797349	1117.58014	-1.4067	-0.00078745	-2.1187	-0.001186	-3.5253	-0.0019735	559.7962962944905	84.284	1.6555	82.023	81.79	83.445	-2.261					82	33	3	0	0	0	0.50149	1	4902	4902		42.396	3.6425	1	1750700			37707	12633	31116	31141	41098	41098					0.02605750908742266
MEIGMKVAL	9	Unmodified	_MEIGMKVAL_					0	0	0		nc|ENSG00000166333|Q13418-3|ILK;nc|ENSG00000166333|Q13418-2|ILK;ENSG00000166333|ENST00000299421|ILK	nc|ENSG00000166333|Q13418-3|ILK	nc|ENSG00000166333|Q13418-3|ILK	MULTI-MSMS	OvCa99_classI_Rep5	1	496.2708740234375	2	496.269381	990.524209	1.9552	0.00097032	0.7606	0.00037746	2.7158	0.0013478	496.2696082457256	106.04	2.0713	106.04	105.62	107.69	0					115	47	4	0	0	0	0.055627	3	11927	11906;11927;11952		115.49	15.414	1	3586100			37708	6665	31117	31142	41099;41100;41101	41100					0.028568264675527644
MEIIRGWAE	9	Unmodified	_MEIIRGWAE_					0	0	0		nc|ENSG00000153234|P43354-2|NR4A2;ENSG00000153234|ENST00000339562|NR4A2	nc|ENSG00000153234|P43354-2|NR4A2	nc|ENSG00000153234|P43354-2|NR4A2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.79638671875	2	552.778959	1103.54336	-0.70342	-0.00038884	2.965	0.001639	2.2616	0.0012502	552.7807034366882	69.947	0.83113	66.466	66.201	67.032	-3.4812					24	16	3	0	0	0	0.027185	1	5273	5273		71.877	4.3838	1	150230			37709	5669	31118	31143	41102	41102					-0.00426500917183148
MEILTSIDQ	9	Unmodified	_MEILTSIDQ_					0	0	0			REV__tr|A0A553SF99|A0A553SF99_NIACI3D-(3,5/4)-trihydroxycyclohexane-1,2-dionehydrolaseOS=NialliacirculansOX=1397GN=iolDPE=3SV=1	REV__tr|A0A553SF99|A0A553SF99_NIACI3D-(3,5/4)-trihydroxycyclohexane-1,2-dionehydrolaseOS=NialliacirculansOX=1397GN=iolDPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	525.2627563476562	2	525.262807	1048.51106	1.6724	0.00087845	-2.8	-0.0014707	-1.1276	-0.00059226	525.26118166203	136.55	0.90443	136.55	136.21	137.11	0					46	18	4	0	0	0	0.094616	1	15924	15924		98.629	8.0285	1	775960	+		37710	29554	31119	31144	41103	41103					-0.01125333110826432
MEILTSIDQ	9	Unmodified	_MEILTSIDQ_					0	0	0			REV__tr|A0A553SF99|A0A553SF99_NIACI3D-(3,5/4)-trihydroxycyclohexane-1,2-dionehydrolaseOS=NialliacirculansOX=1397GN=iolDPE=3SV=1	REV__tr|A0A553SF99|A0A553SF99_NIACI3D-(3,5/4)-trihydroxycyclohexane-1,2-dionehydrolaseOS=NialliacirculansOX=1397GN=iolDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	525.2592163085938	2	525.262807	1048.51106	-1.4268	-0.00074946	-1.7638	-0.00092645	-3.1906	-0.0016759	525.2617261128773	135.8	1.2792	134.69	134.36	135.64	-1.1076					47	25	3	0	0	0	0.35694	1	10992	10992		56.434	3.0823	1	79711	+		37711	29554	31119	31144	41104	41104					-0.01125333110826432
MEINHSRASR	10	Unmodified	_MEINHSRASR_					0	0	0		ENST00000475680.5_1_3:23929087-23929129:+|nuORF	ENST00000475680.5_1_3:23929087-23929129:+|nuORF	ENST00000475680.5_1_3:23929087-23929129:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	600.8031616210938	2	600.798746	1199.58294	2.2664	0.0013616	2.4379	0.0014647	4.7043	0.0028263	600.8001206147972	136.84	2.3448	136.84	136.54	138.88	0					129	49	5	0	0	0	0.41065	2	16022	16022;16046		63.534	3.4156	1	2658400			37712	12452	31120	31145	41105;41106	41105					-0.008869809137422635
MEINRLLSL	9	Unmodified	_MEINRLLSL_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-SECPEP	OvCa9_classI_Rep3	3	544.8216552734375	2	544.810259	1087.60597	-0.93455	-0.00050915	-4.0654	-0.0022149	-5	-0.0027241	545.309083726896	117.54	0.44634	116.5	116.19	116.64	-1.0324					10	8	2	0	0	0	0.027455	1	8792	8792		34.173	0	1	8503.6	+		37713	18823	31121	31146	41107	41107					0.06566645151019657
MEINTIIDDPD	11	Unmodified	_MEINTIIDDPD_					0	0	0			REV__ENST00000393747.3_1_11:70269077-70281851:+|nuORF	REV__ENST00000393747.3_1_11:70269077-70281851:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	638.36279296875	2	638.292293	1274.57003	1.7546	0.0011199	3.344	0.0021345	5.0986	0.0032544	638.2951254732158	147.51	0.62778	147.51	147.26	147.88	0					18	12	2	0	0	0	0.025605	1	17248	17248		72.879	19.528	1	72211	+		37714	17139	31122	31147	41108	41108					-0.05626901607161017
MEISFHLD	8	Unmodified	_MEISFHLD_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-MSMS	OvCa99_classI_Rep5	1	496.2341003417969	2	496.23131	990.448068	2.1357	0.0010598	2.8565	0.0014175	4.9922	0.0024773	496.2326147637392	87.765	0.66711	87.765	87.463	88.13	0					29	15	3	0	0	0	0.50674	1	9302	9302		76.847	13.54	1	1219600			37715	5199	31123	31148	41109	41109					-0.04753854108230371
MEKAKVKVL	9	Unmodified	_MEKAKVKVL_					0	0	0			REV__tr|A0A553SQ70|A0A553SQ70_NIACIDEAD/DEAHboxhelicaseOS=NialliacirculansOX=1397GN=CEQ21_20855PE=3SV=1	REV__tr|A0A553SQ70|A0A553SQ70_NIACIDEAD/DEAHboxhelicaseOS=NialliacirculansOX=1397GN=CEQ21_20855PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3229370117188	2	523.325545	1044.63654	-0.37111	-0.00019421	-3.101	-0.0016228	-3.4721	-0.001817	523.3237349076933	132.36	1.5282	131.23	130.94	132.47	-1.1249					65	30	3	0	0	0	0.56889	1	10614	10614		35.618	0	1	96476	+		37716	30609	31124	31149	41110	41110					0.11600423536060589
MEKANHIES	9	Unmodified	_MEKANHIES_					0	0	0		nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;ENSG00000112297|ENST00000633556|CRYBG1	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	MULTI-SECPEP	OvCa9_classI_Rep3	3	530.3092041015625	2	529.750398	1057.48624	0.30716	0.00016272	4.2025	0.0022263	4.5097	0.002389	529.751360545751	105.32	0.4695	103.98	103.68	104.15	-1.3482					12	8	2	0	0	0	0.027411	1	7396	7396		74.255	28.283	1	12678			37717	2894	31125	31150	41111	41111					-0.04019968193551904
MEKASIDFKS	10	Unmodified	_MEKASIDFKS_					0	0	0		tr|A0A553SPR5|A0A553SPR5_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26875PE=4SV=1	tr|A0A553SPR5|A0A553SPR5_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26875PE=4SV=1	tr|A0A553SPR5|A0A553SPR5_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26875PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.29052734375	2	578.289356	1154.56416	2.6604	0.0015385	-2.746	-0.001588	-0.085583	-4.9492E-05	578.2875433162809	133.74	3.4984	132.22	131.46	134.96	-1.5257					171	70	3	0	0	0	0.5675	1	13005	13005		45.972	5.1941	1	165290			37718	34073	31126	31151	41112	41112					-0.006939553281654298
MEKEKEFLN	9	Unmodified	_MEKEKEFLN_					0	0	0			REV__ENSG00000075218|ENST00000454366|GTSE1	REV__ENSG00000075218|ENST00000454366|GTSE1	MULTI-MSMS	OvCa99_classI_Rep5	1	584.288818359375	2	584.289356	1166.56416	0.34428	0.00020116	-2.1525	-0.0012577	-1.8082	-0.0010565	584.2879945129355	103.32	1.2645	103.32	103.01	104.28	0					83	29	6	0	0	0	0.24951	1	11561	11561		68.787	3.3214	1	10677000	+		37719	16963	31127	31152	41113	41113					-0.012459553281587432
MEKEKEFLN	9	Unmodified	_MEKEKEFLN_					0	0	0			REV__ENSG00000075218|ENST00000454366|GTSE1	REV__ENSG00000075218|ENST00000454366|GTSE1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	584.289356	1166.56416	-0.80948	-0.00047297	-3.1371	-0.001833	-3.9466	-0.002306	584.287634737156	104.25	0.54639	103.67	103.42	103.97	-0.57639	0.082104	-0.00047121	NaN	68.787	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23094	+		37720	16963	31127	31152							-0.012459553281587432
MEKEKEFLN	9	Unmodified	_MEKEKEFLN_					0	0	0			REV__ENSG00000075218|ENST00000454366|GTSE1	REV__ENSG00000075218|ENST00000454366|GTSE1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	584.289356	1166.56416	-0.89795	-0.00052466	-2.3251	-0.0013585	-3.2231	-0.0018832	584.2880783761101	105.04	0.67801	103.69	103.47	104.15	-1.3482	0.10265	0.0004777	NaN	68.787	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22348	+		37721	16963	31127	31152							-0.012459553281587432
MEKEKEFLN	9	Unmodified	_MEKEKEFLN_					0	0	0			REV__ENSG00000075218|ENST00000454366|GTSE1	REV__ENSG00000075218|ENST00000454366|GTSE1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	584.289356	1166.56416	-0.8172	-0.00047748	-3.1738	-0.0018544	-3.991	-0.0023319	584.2876519504881	105.69	0.7552	103.67	103.35	104.1	-2.0161	0.08226	-0.00051402	NaN	68.787	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22413	+		37722	16963	31127	31152							-0.012459553281587432
MEKFLLSYL	9	Oxidation (M)	_M(Oxidation (M))EKFLLSYL_		M(1)EKFLLSYL		M(75)EKFLLSYL	0	0	1			REV__ENST00000324198.10_1_22:26123940-26124126:+|nuORF	REV__ENST00000324198.10_1_22:26123940-26124126:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	580.3072509765625	2	580.307018	1158.59948	0.69649	0.00040418	-3.3512	-0.0019447	-2.6548	-0.0015406	580.3048811543723	150.62	0.64905	150.62	150.29	150.94	0					29	12	3	0	0	0	0.2077	1	17625	17625		75.043	6.2565	1	235970	+		37723	24470	31128	31153	41114	41114		559			0.026527071996497398
MEKHDFKKVL	10	Unmodified	_MEKHDFKKVL_					0	0	0		tr|A0A553SJE4|A0A553SJE4_NIACIAcyl-CoAdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16650PE=3SV=1	tr|A0A553SJE4|A0A553SJE4_NIACIAcyl-CoAdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16650PE=3SV=1	tr|A0A553SJE4|A0A553SJE4_NIACIAcyl-CoAdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16650PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	424.912841796875	3	425.569036	1273.68528	-1.8996	-0.0008084	2.974	0.0012656	1.0744	0.00045722	425.5701763707073	62.822	1.6263	60.077	59.795	61.421	-2.7444					59	30	3	0	0	0	0.027001	1	4803	4803		28.081	3.8497	1	77365			37724	33495	31129	31154	41115	41115					0.05938292105133769
MEKHVAVALN	10	Unmodified	_MEKHVAVALN_					0	0	0			REV__nc|ENSG00000012817|Q9BY66-2|KDM5D	REV__nc|ENSG00000012817|Q9BY66-2|KDM5D	MULTI-MSMS	OvCa9_classI_Rep3	3	556.2969360351562	2	556.300059	1110.58556	-3.9321	-0.0021874	-1.2944	-0.00072007	-5.2265	-0.0029075	556.2991914868587	146.26	1.5443	145.3	144.9	146.44	-0.95946					66	30	3	0	0	0	0.66944	1	12309	12309		33.922	1.9668	1	177360	+		37725	16499	31130	31155	41116	41116					0.0346947449122581
MEKIWHHTF	9	Unmodified	_MEKIWHHTF_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ACTB|p.K238Rfs*46|1|0.21|ENSG00000075624|chr7:5528372-5528372|C/-|frameshift_variant;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000188219|ENST00000683005|POTEE;ENST00000418351.1_1_15:44281927-44282254:-|nuORF;ENST00000441772.1_1_11:1824983-1825307:-|nuORF;ENST00000502306.1_1_5:15450853-15451165:+|nuORF;ENST00000420887.2_1_3:180538532-180538697:+|nuORF;ENST00000520036.1_1_8:85861015-85861132:+|nuORF;ENST00000428275.1_1_X:53172740-53172956:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OvCa99_classI_Rep5	1	410.20416259765625	3	410.202576	1227.5859	0.59657	0.00024472	-0.52897	-0.00021698	0.067607	2.7732E-05	410.2023016809445	61.349	0.7126	61.349	61.113	61.826	0					40	16	3	0	0	0	0.14855	1	5407	5407		85.161	35.625	1	2188400			37726	1537;8634;5081	31131	31156	41117	41117					-0.01879105788952984
MEKKDLGPK	9	Unmodified	_MEKKDLGPK_					0	0	0		ENSG00000158555|ENST00000336898|GDPD5;ENST00000527322.5_1_11:75154120-75168815:-|nuORF;nc|ENSG00000158555|Q8WTR4-4|GDPD5;nc|ENSG00000158555|Q8WTR4-3|GDPD5;nc|ENSG00000158555|Q8WTR4-2|GDPD5;ENST00000533805.5_1_11:75159628-75160980:-|nuORF;ENST00000533911.1_1_11:75154120-75160980:-|nuORF	ENSG00000158555|ENST00000336898|GDPD5	ENSG00000158555|ENST00000336898|GDPD5	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.2888793945312	2	523.289159	1044.56377	-0.58138	-0.00030423	-3.1707	-0.0016592	-3.7521	-0.0019634	523.2872096280854	96.142	1.4069	93.717	93.254	94.661	-2.4256					59	27	3	0	0	0	0.40667	1	8475	8475		51.335	0.14276	1	600950			37727	5961	31132	31157	41118	41118					0.043266697426361134
MEKKLPDL	8	Unmodified	_MEKKLPDL_					0	0	0			REV__ENSG00000205832|ENST00000444310|C16orf96	REV__ENSG00000205832|ENST00000444310|C16orf96	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.319091796875	2	487.272978	972.531403	1.0545	0.00051382	0.40535	0.00019752	1.4598	0.00071134	487.2731136949879	109.6	0.44494	109.6	109.46	109.9	0					13	9	2	0	0	0	0.028476	1	12456	12456		25.45	0	1	84921	+		37728	23229	31133	31158	41119	41119					0.044038823396363114
MEKKREKEL	9	Oxidation (M)	_M(Oxidation (M))EKKREKEL_		M(1)EKKREKEL		M(77)EKKREKEL	0	0	1		ENST00000435327.2_1_3:42791351-42799837:-|nuORF;ENST00000492806.5_1_3:42788640-42799837:-|nuORF;CCDC13|p.L481Wfs*6|1|0.05|ENSG00000244607|chr3:42733540-42733540|G/-|frameshift_variant;ENSG00000244607|ENST00000310232|CCDC13	ENST00000435327.2_1_3:42791351-42799837:-|nuORF	ENST00000435327.2_1_3:42791351-42799837:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.23138427734375	3	402.888546	1205.64381	1.4306	0.00057638	-3.3313	-0.0013421	-1.9007	-0.00076575	402.887076841027	32.046	1.1335	32.046	31.807	32.941	0					31	22	3	0	0	0	0.027304	1	1458	1458		77.318	19.088	1	102040			37729	192	31134	31159	41120	41120		4			0.04921111345811369
MEKKRMED	8	Oxidation (M)	_MEKKRM(Oxidation (M))ED_		MEKKRM(1)ED		M(-49)EKKRM(49)ED	0	0	1			REV__ENSG00000087116|ENST00000251582|ADAMTS2	REV__ENSG00000087116|ENST00000251582|ADAMTS2	MULTI-MSMS	OvCa99_classI_Rep5	1	541.7568359375	2	541.752084	1081.48961	1.1017	0.00059687	4.1888	0.0022693	5.2905	0.0028662	541.7542623573922	139.06	0.43771	139.06	138.78	139.22	0					10	8	2	0	0	0	0.65062	1	16234	16234		53.351	7.3792	2	74627	+		37730	17157	31135	31160	41121	41121		404			-0.047870414111912396
MEKKSKPK	8	Unmodified	_MEKKSKPK_					0	0	0		nc|ENSG00000143622|Q92963-2|RIT1;ENSG00000143622|ENST00000368323|RIT1;nc|ENSG00000143622|Q92963-3|RIT1	nc|ENSG00000143622|Q92963-2|RIT1	nc|ENSG00000143622|Q92963-2|RIT1	MULTI-MSMS	OvCa9_classI_Rep2	2	488.2839660644531	2	488.28642	974.558287	-0.60534	-0.00029558	-3.8665	-0.0018879	-4.4718	-0.0021835	488.2844519822403	100.12	1.1905	99.289	98.964	100.15	-0.83051					71	23	4	0	0	0	0.72896	1	9168	9168		37.159	2.9866	1	404010			37731	5078	31136	31161	41122	41122					0.0699899095083083
MEKLSRHLAQ	10	Unmodified	_MEKLSRHLAQ_					0	0	0			REV__tr|A0A553SJA8|A0A553SJA8_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_16435PE=4SV=1	REV__tr|A0A553SJA8|A0A553SJA8_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_16435PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	606.8338623046875	2	606.829514	1211.64448	0.87439	0.00053061	4.315	0.0026185	5.1894	0.0031491	606.8318108251257	87.469	2.3648	86.038	85.642	88.007	-1.4311					115	47	6	0	0	0	0.37132	2	7623	7614;7623		60.118	0	1	1990900	+		37732	29986	31137	31162	41123;41124	41124					0.04711950785554109
MEKLSRHLAQ	10	Unmodified	_MEKLSRHLAQ_					0	0	0			REV__tr|A0A553SJA8|A0A553SJA8_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_16435PE=4SV=1	REV__tr|A0A553SJA8|A0A553SJA8_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_16435PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	606.8335571289062	2	606.829514	1211.64448	1.2168	0.00073836	3.6258	0.0022002	4.8425	0.0029386	606.8317229441808	88.223	2.4058	86.092	85.803	88.209	-2.1309					100	47	3	0	0	0	0.32747	1	5376	5376		56.434	19.987	1	3192200	+		37733	29986	31137	31162	41125	41125					0.04711950785554109
MEKNLTHVM	9	Unmodified	_MEKNLTHVM_					0	0	0		ENST00000396056.6_1_3:44700855-44701443:+|nuORF	ENST00000396056.6_1_3:44700855-44701443:+|nuORF	ENST00000396056.6_1_3:44700855-44701443:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.7932739257812	2	551.772819	1101.53109	1.9943	0.0011004	4.3529	0.0024018	6.3472	0.0035022	551.7745683771586	85.05	0.24511	85.05	84.882	85.127	0					8	5	2	0	0	0	0.027462	1	8897	8897		34.173	3.8548	1	96018			37734	11309	31138	31163	41126	41126					-0.015618606518728484
MEKNVYDMLD	10	Unmodified	_MEKNVYDMLD_					0	0	0			REV__tr|A0A553SML0|A0A553SML0_NIACILipoproteinOS=NialliacirculansOX=1397GN=CEQ21_22690PE=4SV=1	REV__tr|A0A553SML0|A0A553SML0_NIACILipoproteinOS=NialliacirculansOX=1397GN=CEQ21_22690PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	629.2774047851562	2	629.278131	1256.54171	-1.1065	-0.00069631	0.89524	0.00056335	-0.21128	-0.00013295	629.2787761772053	118.5	2.2976	117.16	116.89	119.19	-1.3444					117	43	5	0	0	0	0.53807	1	11138	11138		49.536	0	1	542100	+		37735	30343	31139	31164	41127	41127					-0.07629922788100885
MEKPILKNL	9	Unmodified	_MEKPILKNL_					0	0	0		ENSG00000184459|ENST00000300399|BPIFC;nc|ENSG00000184459|Q8NFQ6-2|BPIFC	ENSG00000184459|ENST00000300399|BPIFC	ENSG00000184459|ENST00000300399|BPIFC	MULTI-MSMS	OvCa9_classI_Rep3	3	543.3218994140625	2	543.323002	1084.63145	1.2599	0.00068455	-1.667	-0.00090572	-0.40706	-0.00022117	543.3219387842813	120.3	1.3009	119.27	118.92	120.22	-1.0271					57	25	3	0	0	0	0.22621	1	9167	9167		71.877	14.066	1	198450			37736	8160	31140	31165	41128	41128					0.09252119673465131
MEKQAEKDE	9	Unmodified	_MEKQAEKDE_					0	0	0			REV__ENSG00000115841|ENST00000354545|RMDN2	REV__ENSG00000115841|ENST00000354545|RMDN2	MULTI-MSMS	OvCa99_classI_Rep5	1	554.2531127929688	2	554.252971	1106.49139	1.4452	0.00080099	-0.73574	-0.00040779	0.70944	0.00039321	554.252178796638	93.376	0.74775	93.376	93.093	93.841	0					58	17	4	0	0	0	0.22035	1	10120	10120		72.879	6.45	1	5649400	+		37737	18273	31141	31166	41129	41129					-0.057597091215939145
MEKRRGHHD	9	Unmodified	_MEKRRGHHD_					0	0	0		ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MULTI-MSMS	OvCa99_classI_Rep5	1	583.2852783203125	2	583.285805	1164.55706	2.227	0.001299	-4.3027	-0.0025097	-2.0757	-0.0012107	583.2832100065805	94.538	1.4872	94.538	93.923	95.41	0					46	34	2	0	0	0	0.16562	1	10286	10286		82.241	2.5279	1	3355200			37738	4421	31142	31167	41130	41130					-0.018638303653688126
MEKSFREE	8	Unmodified	_MEKSFREE_					0	0	0		ENSG00000123171|ENST00000242819|CCDC70	ENSG00000123171|ENST00000242819|CCDC70	ENSG00000123171|ENST00000242819|CCDC70	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.8071899414062	2	528.244949	1054.47534	-2.9676	-0.0015676	1.3589	0.00071783	-1.6088	-0.00084981	528.2453727227638	87.855	1.2109	85.229	84.85	86.061	-2.6269					68	23	4	0	0	0	0.028476	1	7520	7520		38.806	9.6566	1	341700			37739	3581	31143	31168	41131	41131					-0.04971370567818667
MEKTINQVF	9	Unmodified	_MEKTINQVF_					0	0	0		ENSG00000065882|ENST00000698857|TBC1D1;nc|ENSG00000065882|Q86TI0|TBC1D1;nc|ENSG00000065882|Q86TI0-2|TBC1D1;ENST00000401554.5_1_4:38112345-38138953:+|nuORF;ENST00000407365.5_1_4:38113700-38138953:+|nuORF	ENSG00000065882|ENST00000698857|TBC1D1	ENSG00000065882|ENST00000698857|TBC1D1	MULTI-MSMS	OvCa99_classI_Rep5	1	555.2864379882812	2	555.286617	1108.55868	2.0225	0.0011231	-2.744	-0.0015237	-0.72145	-0.00040061	555.2849992463003	107.3	0.84266	107.3	106.93	107.77	0					53	19	5	0	0	0	0.24951	1	12085	12085		68.787	10.005	1	1819200			37740	1338	31144	31169	41132	41132					0.00874365880008554
MEKTLRRA	8	Unmodified	_MEKTLRRA_					0	0	0			REV__ENSG00000128908|ENST00000648947|INO80	REV__ENSG00000128908|ENST00000648947|INO80	MULTI-MSMS	OvCa99_classI_Rep5	1	502.7880554199219	2	502.787118	1003.55968	1.607	0.000808	-0.48631	-0.00024451	1.1207	0.00056349	502.78657629909475	133.31	1.3501	133.31	132.99	134.34	0					66	28	3	0	0	0	0.59148	1	15486	15486		65.803	2.4969	1	1054800	+		37741	18876	31145	31170	41133	41133					0.05804625039581879
MEKWELRS	8	Unmodified	_MEKWELRS_					0	0	0			REV__tr|A0A553SFB5|A0A553SFB5_NIACIGlycosylhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_08570PE=4SV=1	REV__tr|A0A553SFB5|A0A553SFB5_NIACIGlycosylhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_08570PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	539.7710571289062	2	539.771134	1077.52771	1.6662	0.00089937	-3.9779	-0.0021471	-2.3117	-0.0012478	539.7688072068732	122.74	1.2477	122.74	122.45	123.69	0					69	26	4	0	0	0	0.42405	1	14168	14168		85.161	18.732	1	1870200	+		37742	29559	31146	31171	41134	41134					-0.007947874342335126
MEKYRESF	8	Unmodified	_MEKYRESF_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.25341796875	2	545.255317	1088.49608	-0.60284	-0.0003287	-2.8849	-0.001573	-3.4877	-0.0019017	545.2536622749726	105.64	1.3151	103.62	103.35	104.66	-2.0161					64	25	4	0	0	0	0.36941	1	9599	9599		94.006	3.6366	1	290350	+		37743	22731	31147	31172	41135	41135					-0.044627801881688356
MEKYRESF	8	Unmodified	_MEKYRESF_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.2535400390625	2	545.255317	1088.49608	-1.1451	-0.00062438	-1.9274	-0.0010509	-3.0725	-0.0016753	545.254136098056	109.03	1.3968	107.3	106.97	108.37	-1.7256					73	26	4	0	0	0	0.48084	1	9996	9996		79.451	2.6044	1	269880	+		37744	22731	31147	31172	41136	41136					-0.044627801881688356
MEKYRESF	8	Unmodified	_MEKYRESF_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	545.255317	1088.49608	-0.062748	-3.4214E-05	-3.4225	-0.0018662	-3.4853	-0.0019004	545.2533172127243	107.64	1.5168	107.33	107.07	108.58	-0.30836	0.030627	-0.00044128	NaN	79.451	68	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182340	+		37745	22731	31147	31172							-0.044627801881688356
MEKYRESF	8	Unmodified	_MEKYRESF_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	545.255317	1088.49608	-0.18182	-9.9138E-05	-3.1111	-0.0016963	-3.2929	-0.0017955	545.2534779782742	108.47	1.7082	107.27	106.9	108.61	-1.1978	-0.031289	-0.00010166	NaN	79.451	72	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213470	+		37746	22731	31147	31172							-0.044627801881688356
MELASQGAGNF	11	Unmodified	_MELASQGAGNF_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.2949829101562	2	562.755681	1123.49681	1.4771	0.00083126	-0.50456	-0.00028394	0.97256	0.00054731	562.7550068890317	142.6	0.34933	142.6	142.34	142.69	0					12	6	3	0	0	0	0.025638	1	16665	16665		30.318	7.2752	1	51965			37747	8857	31148	31173	41137	41137					-0.05999985539119734
MELATRYQS	9	Unmodified	_MELATRYQS_					0	0	0		ENST00000447180.5_1_7:21979915-21985464:-|nuORF	ENST00000447180.5_1_7:21979915-21985464:-|nuORF	ENST00000447180.5_1_7:21979915-21985464:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	549.7644653320312	2	549.766049	1097.51754	1.0082	0.00055426	-2.7019	-0.0014854	-1.6938	-0.00093117	549.7642897467599	149.63	2.5698	149.63	149.31	151.88	0					74	51	2	0	0	0	0.3076	1	17655	17655		62.107	3.8775	1	363850			37748	12004	31149	31174	41138	41138					-0.02731395159457861
MELEESIIK	9	Unmodified	_MELEESIIK_					0	0	0			REV__tr|A0A7D6VUJ3|A0A7D6VUJ3_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_22630PE=4SV=1	REV__tr|A0A7D6VUJ3|A0A7D6VUJ3_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_22630PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	546.2861328125	2	546.286282	1090.55801	-1.7842	-0.00097466	1.4803	0.00080868	-0.30384	-0.00016598	546.2868719902328	137.72	1.1662	136.63	136.24	137.41	-1.0858					55	23	3	0	0	0	0.24951	1	11239	11239		68.787	7.8149	1	134560	+		37749	31683	31150	31175	41139	41139					0.01635526440304602
MELFVQRPE	9	Unmodified	_MELFVQRPE_					0	0	0		nc|ENSG00000243989|Q03154-3|ACY1;nc|ENSG00000243989|Q03154-4|ACY1;ENSG00000243989|ENST00000636358|ACY1;ENST00000497128.1_1_3:52019461-52020636:+|nuORF;ENST00000465121.5_1_3:52018080-52021658:+|nuORF	nc|ENSG00000243989|Q03154-3|ACY1	nc|ENSG00000243989|Q03154-3|ACY1	MULTI-MSMS	OvCa99_classI_Rep5	1	574.7958984375	2	574.792066	1147.56958	1.9875	0.0011424	3.3877	0.0019472	5.3751	0.0030896	574.793816477799	137.39	0.71065	137.39	137.11	137.82	0					29	13	3	0	0	0	0.1944	1	16025	16025		77.318	0.54344	1	242960			37750	9388	31151	31176	41140	41140					0.0016976825429537712
MELGHHILK	9	Unmodified	_MELGHHILK_					0	0	0		ENSG00000115183|ENST00000263635|TANC1;TANC1|p.T1589Ifs*85|1|0.16|ENSG00000115183|chr2:159230192-159230192|C/-|frameshift_variant;nc|ENSG00000115183|Q9C0D5-2|TANC1	ENSG00000115183|ENST00000263635|TANC1	ENSG00000115183|ENST00000263635|TANC1	MULTI-MSMS	OvCa99_classI_Rep5	1	539.3024291992188	2	539.297319	1076.58008	1.2486	0.00067336	-3.3787	-0.0018221	-2.1301	-0.0011488	539.2953872871755	144.45	2.1174	144.45	144.06	146.18	0					110	43	4	0	0	0	0.12365	1	16903	16903		90.777	5.6158	1	1479700			37751	3067	31152	31177	41141	41141					0.04485795699383743
MELGSYQSIK	10	Unmodified	_MELGSYQSIK_					0	0	0		tr|A0A553ST00|A0A553ST00_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03925PE=3SV=1	tr|A0A553ST00|A0A553ST00_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03925PE=3SV=1	tr|A0A553ST00|A0A553ST00_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03925PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2900390625	2	578.289356	1154.56416	-1.351	-0.00078126	1.6366	0.00094645	0.28565	0.00016519	578.2900356526777	133.55	3.1988	132.42	131.63	134.83	-1.1249					151	64	4	0	0	0	0.45822	1	10734	10734		60.118	0	1	94067			37752	34441	31153	31178	41142	41142					-0.006939553281654298
MELIKVTEE	9	Unmodified	_MELIKVTEE_					0	0	0		tr|A0A7D6ZUM3|A0A7D6ZUM3_9CLOTWingedhelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_00730PE=4SV=1	tr|A0A7D6ZUM3|A0A7D6ZUM3_9CLOTWingedhelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_00730PE=4SV=1	tr|A0A7D6ZUM3|A0A7D6ZUM3_9CLOTWingedhelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_00730PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	546.2864379882812	2	546.286282	1090.55801	-1.7842	-0.00097466	1.4803	0.00080868	-0.30384	-0.00016598	546.2868719902328	137.72	1.1662	136.63	136.24	137.41	-1.0858					55	23	3	0	0	0	0.28934	1	11233	11233		64.207	2.516	1	134560			37753	35776	31154	31179	41143	41143					0.01635526440304602
MELKALKLT	9	Unmodified	_MELKALKLT_					0	0	0			REV__ENSG00000054690|ENST00000329153|PLEKHH1	REV__ENSG00000054690|ENST00000329153|PLEKHH1	MSMS	OvCa9_classI_Rep2	2	523.81640625	2	523.817553	1045.62055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.39	1	122.17	121.67	122.67	-0.21803								0	0	0	0.16802	1	11849	11849		56.721	1.9447	1		+		37754	16702	31155	31180	41144	41144					0.09956717299132833
MELKDLHQP	9	Unmodified	_MELKDLHQP_					0	0	0		nc|ENSG00000111554|Q8TC05-4|MDM1;nc|ENSG00000111554|Q8TC05|MDM1;ENSG00000111554|ENST00000682720|MDM1;ENST00000536997.1_1_12:68715294-68716924:-|nuORF;ENST00000538454.2_1_12:68715078-68716924:-|nuORF	nc|ENSG00000111554|Q8TC05-4|MDM1	nc|ENSG00000111554|Q8TC05-4|MDM1	MULTI-MSMS	OvCa99_classI_Rep5	1	555.7854614257812	2	555.784241	1109.55393	1.5262	0.00084826	0.77291	0.00042957	2.2991	0.0012778	555.7845324562932	93.442	0.66334	93.442	93.136	93.799	0					39	15	3	0	0	0	0.35444	1	10146	10146		56.721	3.7844	1	5771800			37755	2829	31156	31181	41145	41145					0.0035348173723832588
MELKLSSHE	9	Unmodified	_MELKLSSHE_					0	0	0		ENSG00000162434|ENST00000342505|JAK1;ENST00000494904.1_1_1:65325735-65330472:-|nuORF;JAK1|p.N714Kfs*60|1|0.11|ENSG00000162434|chr1:64844863-64844864|-/CGAGCACC|frameshift_variant	ENSG00000162434|ENST00000342505|JAK1;JAK1|p.N714Kfs*60|1|0.11|ENSG00000162434|chr1:64844863-64844864|-/CGAGCACC|frameshift_variant	ENSG00000162434|ENST00000342505|JAK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.83642578125	2	537.268424	1072.5223	2.0416	0.0010969	-1.7712	-0.00095162	0.27038	0.00014527	537.2673969513936	82.855	0.55522	82.855	82.479	83.035	0					24	12	3	0	0	0	0.027461	1	8555	8555		49.442	0	1	276480			37756	6182;14513	31157	31182	41146	41146					-0.011065110167010062
MELKNKEN	8	Unmodified	_MELKNKEN_					0	0	0			REV__ENSG00000163288|ENST00000295454|GABRB1	REV__ENSG00000163288|ENST00000295454|GABRB1	MULTI-MSMS	OvCa99_classI_Rep5	1	503.25738525390625	2	503.255317	1004.49608	-0.56533	-0.00028451	-0.22269	-0.00011207	-0.78802	-0.00039657	503.25505991305835	67.893	0.74397	67.893	67.489	68.233	0					42	18	3	0	0	0	0.65062	1	6401	6401		53.351	3.3269	1	4711200	+		37757	20823	31158	31183	41147	41147					-0.005987801881815358
MELLGPSVED	10	Unmodified	_MELLGPSVED_					0	0	0		CSNK1D|p.L89V|1|0.15|ENSG00000141551|chr17:82255500-82255500|G/C|missense_variant	CSNK1D|p.L89V|1|0.15|ENSG00000141551|chr17:82255500-82255500|G/C|missense_variant	CSNK1D|p.L89V|1|0.15|ENSG00000141551|chr17:82255500-82255500|G/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.2901000976562	2	545.260265	1088.50598	-0.19866	-0.00010832	4.3343	0.0023633	4.1356	0.002255	545.2623855109586	73.473	0.40012	73.473	73.317	73.717	0					13	9	2	0	0	0	0.026523	1	7244	7244		79.451	18.479	1	330310			37758	688	31159	31184	41148	41148					-0.0347363697342189
MELLGPSVED	10	Unmodified	_MELLGPSVED_					0	0	0		CSNK1D|p.L89V|1|0.15|ENSG00000141551|chr17:82255500-82255500|G/C|missense_variant	CSNK1D|p.L89V|1|0.15|ENSG00000141551|chr17:82255500-82255500|G/C|missense_variant	CSNK1D|p.L89V|1|0.15|ENSG00000141551|chr17:82255500-82255500|G/C|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	545.260265	1088.50598	-0.78721	-0.00042924	3.3666	0.0018356	2.5793	0.0014064	545.2621830208083	75.603	1.0366	73.749	73.271	74.308	-1.854	0.17302	-0.00012955	NaN	79.451	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57140			37759	688	31159	31184							-0.0347363697342189
MELLGPSVED	10	Unmodified	_MELLGPSVED_					0	0	0		CSNK1D|p.L89V|1|0.15|ENSG00000141551|chr17:82255500-82255500|G/C|missense_variant	CSNK1D|p.L89V|1|0.15|ENSG00000141551|chr17:82255500-82255500|G/C|missense_variant	CSNK1D|p.L89V|1|0.15|ENSG00000141551|chr17:82255500-82255500|G/C|missense_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	545.260265	1088.50598	-0.67827	-0.00036983	3.4451	0.0018785	2.7668	0.0015086	545.2621521332417	76.446	0.94827	73.507	73.222	74.171	-2.9389	-0.069388	-4.3908E-05	NaN	79.451	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	205600			37760	688	31159	31184							-0.0347363697342189
MELLIMID	8	Unmodified	_MELLIMID_					0	0	0		tr|A0A553SF41|A0A553SF41_NIACIRibose-phosphatepyrophosphokinaseOS=NialliacirculansOX=1397GN=prsPE=3SV=1;tr|A0A553SHG9|A0A553SHG9_NIACIRibose-phosphatepyrophosphokinaseOS=NialliacirculansOX=1397GN=prsPE=3SV=1;tr|A0A7D6VS62|A0A7D6VS62_9CLOTRibose-phosphatepyrophosphokinaseOS=ClostridiumintestinaleOX=36845GN=prsPE=3SV=1	tr|A0A553SF41|A0A553SF41_NIACIRibose-phosphatepyrophosphokinaseOS=NialliacirculansOX=1397GN=prsPE=3SV=1;tr|A0A7D6VS62|A0A7D6VS62_9CLOTRibose-phosphatepyrophosphokinaseOS=ClostridiumintestinaleOX=36845GN=prsPE=3SV=1	tr|A0A7D6VS62|A0A7D6VS62_9CLOTRibose-phosphatepyrophosphokinaseOS=ClostridiumintestinaleOX=36845GN=prsPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.2911682128906	2	489.255939	976.497326	2.2539	0.0011027	0.71151	0.00034811	2.9654	0.0014508	489.2561983464732	93.929	0.29514	93.929	93.841	94.136	0					12	6	3	0	0	0	0.028476	1	10214	10214		40.573	8.6178	1	183470			37761	32988;34991	31160	31185	41149	41149					0.008137178563742964
MELLLNHSV	9	Unmodified	_MELLLNHSV_					0	0	0		ENSG00000072315|ENST00000262839|TRPC5	ENSG00000072315|ENST00000262839|TRPC5	ENSG00000072315|ENST00000262839|TRPC5	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.2808837890625	2	528.281334	1054.54812	0.071184	3.7605E-05	-0.3303	-0.00017449	-0.25912	-0.00013689	528.2810213022229	110.49	1.6308	108.88	108.23	109.86	-1.6011					80	30	3	0	0	0	0.53483	1	10140	10140		39.253	0.44669	1	451410			37762	1471	31161	31186	41150	41150					0.023023832256058085
MELLMLLNE	9	Unmodified	_MELLMLLNE_					0	0	0			REV__tr|A0A7D6VUN1|A0A7D6VUN1_9CLOTSmallribosomalsubunitproteinuS4OS=ClostridiumintestinaleOX=36845GN=rpsDPE=3SV=1	REV__tr|A0A7D6VUN1|A0A7D6VUN1_9CLOTSmallribosomalsubunitproteinuS4OS=ClostridiumintestinaleOX=36845GN=rpsDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.2854614257812	2	553.285228	1104.5559	0.99546	0.00055077	-0.792	-0.0004382	0.20346	0.00011257	553.284772614335	110.27	1.3677	108.67	108.23	109.59	-1.6011					78	25	5	0	0	0	0.075543	1	10144	10144		104.06	5.4274	1	1056000	+		37763	31689	31162	31187	41151	41151					0.007807744308593101
MELLTMLCAV	10	Unmodified	_MELLTMLCAV_					0	0	0			REV__tr|A0A7D6VRS5|A0A7D6VRS5_9CLOTM42familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02055PE=3SV=1	REV__tr|A0A7D6VRS5|A0A7D6VRS5_9CLOTM42familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02055PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	562.2824096679688	2	562.281631	1122.54871	2.7941	0.0015711	-4.4539	-0.0025044	-1.6598	-0.00093328	562.2791249649191	98.727	0.7356	98.727	98.419	99.154	0					38	17	3	0	0	0	0.37918	1	10910	10910		71.296	1.6681	1	1541200	+		37764	31441	31163	31188	41152	41152					-0.007662814412469743
MELMFSSGLG	10	Unmodified	_MELMFSSGLG_					0	0	0			REV__tr|A0A553SU14|A0A553SU14_NIACIPTSsugartransportersubunitIIBOS=NialliacirculansOX=1397GN=CEQ21_06030PE=4SV=1	REV__tr|A0A553SU14|A0A553SU14_NIACIPTSsugartransportersubunitIIBOS=NialliacirculansOX=1397GN=CEQ21_06030PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	536.2451782226562	2	536.246103	1070.47765	0.97643	0.00052361	-1.5969	-0.00085634	-0.62049	-0.00033273	536.2452380983605	114.48	3.218	113.43	113.05	116.27	-1.055					122	64	2	0	0	0	0.46756	1	8489	8489		58.782	5.4305	1	980200	+		37765	31030	31164	31189	41153	41153					-0.05476658154384495
MELNAAKLR	9	Unmodified	_MELNAAKLR_					0	0	0			REV__ENSG00000143614|ENST00000368655|GATAD2B	REV__ENSG00000143614|ENST00000368655|GATAD2B	MULTI-MSMS	OvCa9_classI_Rep3	3	523.2908935546875	2	523.294776	1044.575	-2.7102	-0.0014183	-1.6938	-0.00088638	-4.4041	-0.0023046	523.2937325019216	142.01	1.2384	141	140.73	141.97	-1.0106					63	24	3	0	0	0	0.35444	1	11763	11763		56.721	8.8055	1	67260	+		37766	19856	31165	31190	41154	41154					0.05449491836748166
MELPDYVLL	9	Unmodified	_MELPDYVLL_					0	0	0		nc|ENSG00000110841|Q86W92-4|PPFIBP1;ENSG00000110841|ENST00000228425|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1;nc|ENSG00000110841|Q86W92-3|PPFIBP1	nc|ENSG00000110841|Q86W92-4|PPFIBP1;nc|ENSG00000110841|Q86W92|PPFIBP1	nc|ENSG00000110841|Q86W92-4|PPFIBP1	MSMS	OvCa99_classI_Rep5	1	546.7875366210938	2	546.785918	1091.55728	NaN	NaN	NaN	NaN	NaN	NaN	NaN	158.27	1	158.27	157.77	158.77	0								0	0	0	0.17824	1	18548	18548		37.159	2.0071	1				37767	2795;14956	31166	31191	41155	41155					0.015167317912528233
MELQRELEQ	9	Unmodified	_MELQRELEQ_					0	0	0			REV__MDN1|p.I5359Kfs*8|1|0.1|ENSG00000112159|chr6:89650154-89650155|-/CATAGCT|frameshift_variant	REV__MDN1|p.I5359Kfs*8|1|0.1|ENSG00000112159|chr6:89650154-89650155|-/CATAGCT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.2754516601562	2	588.289888	1174.56522	0.87267	0.00051338	0.075195	4.4236E-05	0.94786	0.00055762	588.2898431689212	153.79	1.2271	153.79	153.5	154.72	0					43	24	2	0	0	0	0.027438	1	18016	18016		47.96	0	1	333800	+		37768	18079	31167	31192	41156	41156					-0.015077409592549884
MELRGMRLK	9	Unmodified	_MELRGMRLK_					0	0	0			REV__ENST00000464585.1_1_3:51741837-51742137:+|nuORF	REV__ENST00000464585.1_1_3:51741837-51742137:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3194580078125	2	567.317728	1132.6209	0.11227	6.3694E-05	2.3508	0.0013337	2.4631	0.0013974	567.3194726032168	92.71	1.027	91.542	91.182	92.209	-1.168					43	19	4	0	0	0	0.3076	1	8263	8263		62.107	9.1707	1	233820	+		37769	26153	31168	31193	41157	41157					0.059898137473737734
MELRGMRLK	9	Unmodified	_MELRGMRLK_					0	0	0			REV__ENST00000464585.1_1_3:51741837-51742137:+|nuORF	REV__ENST00000464585.1_1_3:51741837-51742137:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	567.317728	1132.6209	0.11227	6.3694E-05	2.3508	0.0013337	2.4631	0.0013974	567.3194726032168	92.71	1.027	91.542	91.182	92.209	-1.168	-0.0088625	0.00019405	NaN	62.107	43	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233820	+		37770	26153	31168	31193							0.059898137473737734
MELRGMRLK	9	Unmodified	_MELRGMRLK_					0	0	0			REV__ENST00000464585.1_1_3:51741837-51742137:+|nuORF	REV__ENST00000464585.1_1_3:51741837-51742137:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	567.317728	1132.6209	-1.3345	-0.0007571	3.1514	0.0017878	1.8169	0.0010307	567.3197781113845	93.482	1.0119	91.52	91.228	92.24	-1.9617	-0.030407	0.0011024	NaN	62.107	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	305740	+		37771	26153	31168	31193							0.059898137473737734
MELTDPPLQ	9	Unmodified	_MELTDPPLQ_					0	0	0			REV__ENSG00000164967|ENST00000378959|RPP25L	REV__ENSG00000164967|ENST00000378959|RPP25L	MULTI-MSMS	OvCa99_classI_Rep5	1	522.2557983398438	2	522.257525	1042.5005	0.54643	0.00028538	-4.0709	-0.0021261	-3.5245	-0.0018407	522.2552950400525	132.52	0.94205	132.52	132.23	133.17	0					46	19	4	0	0	0	0.27001	1	15390	15390		66.429	4.3219	1	377890	+		37772	21044	31169	31194	41158	41158					-0.01905315765270643
MELVDEDDL	9	Unmodified	_MELVDEDDL_					0	0	0			REV__tr|A0A553SJF4|A0A553SJF4_NIACIFe-SclusterassemblyATPaseSufCOS=NialliacirculansOX=1397GN=sufCPE=3SV=1	REV__tr|A0A553SJF4|A0A553SJF4_NIACIFe-SclusterassemblyATPaseSufCOS=NialliacirculansOX=1397GN=sufCPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	539.7344970703125	2	539.73408	1077.45361	0.95688	0.00051646	-0.65731	-0.00035477	0.29957	0.00016169	539.7334368198315	157.17	0.4008	157.17	157	157.4	0					12	7	2	0	0	0	0.55588	1	18424	18424		37.159	3.6435	1	63308	+		37773	30004	31170	31195	41159	41159					-0.0820222010706857
MELVKALTT	9	Unmodified	_MELVKALTT_					0	0	0			REV__ENST00000379380.8_1_5:130535290-130535404:+|nuORF	REV__ENST00000379380.8_1_5:130535290-130535404:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	503.28192138671875	2	503.286085	1004.55762	-0.14905	-7.5014E-05	-3.462	-0.0017424	-3.6111	-0.0018174	503.2841638760596	111.54	1.5769	111.4	111.03	112.61	-0.13961					88	31	4	0	0	0	0.42576	1	10565	10565		49.536	1.8787	1	340990	+		37774	25156	31171	31196	41160	41160					0.055521515110854125
MELVKALTT	9	Unmodified	_MELVKALTT_					0	0	0			REV__ENST00000379380.8_1_5:130535290-130535404:+|nuORF	REV__ENST00000379380.8_1_5:130535290-130535404:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.28167724609375	2	503.286085	1004.55762	-0.10977	-5.5244E-05	-3.6889	-0.0018566	-3.7986	-0.0019118	503.28403729511336	112.98	2.1932	111.53	110.54	112.73	-1.4461					96	43	4	0	0	0	0.22035	1	10443	10443		72.879	3.2516	1	450900	+		37775	25156	31171	31196	41161	41161					0.055521515110854125
MELVLIHST	9	Unmodified	_MELVLIHST_					0	0	0			REV__tr|A0A7D7A0Q7|A0A7D7A0Q7_9CLOTPirinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11000PE=3SV=1	REV__tr|A0A7D7A0Q7|A0A7D7A0Q7_9CLOTPirinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11000PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.3362426757812	2	521.78371	1041.55287	1.0375	0.00054137	0.075304	3.9292E-05	1.1128	0.00058066	521.7834720127582	109.93	1.0784	109.93	109.46	110.54	0					30	23	2	0	0	0	0.027433	1	12404	12404		42.396	0	1	124750	+		37776	32452	31172	31197	41162	41162					0.03375267368346613
MELVPLCLM	9	Oxidation (M)	_MELVPLCLM(Oxidation (M))_		MELVPLCLM(1)		M(-58)ELVPLCLM(58)	0	0	1			REV__nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	REV__nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MULTI-MSMS	OvCa9_classI_Rep2	2	532.761962890625	2	532.763074	1063.5116	-2.5391	-0.0013527	2.4938	0.0013286	-0.045342	-2.4157E-05	532.7645469241053	118.72	1.6329	118.57	117.94	119.57	-0.14755					101	32	5	0	0	0	0.34496	1	11415	11415		57.811	9.8957	2	241770	+		37777	19887	31173	31198	41163	41163		459			-0.017619529870216866
MELVSLSVK	9	Unmodified	_MELVSLSVK_					0	0	0		ENSG00000152763|ENST00000371026|DNAI4;nc|ENSG00000152763|Q5VTH9-3|DNAI4;nc|ENSG00000152763|Q5VTH9-2|DNAI4	ENSG00000152763|ENST00000371026|DNAI4	ENSG00000152763|ENST00000371026|DNAI4	MULTI-MSMS	OvCa9_classI_Rep2	2	503.282470703125	2	503.286085	1004.55762	-0.14905	-7.5014E-05	-3.462	-0.0017424	-3.6111	-0.0018174	503.2841638760596	111.54	1.5769	111.4	111.03	112.61	-0.13961					88	31	4	0	0	0	0.12515	1	10536	10536		90.37	4.508	1	340990			37778	5640	31174	31199	41164	41164					0.0555215151110815
MELWADLQ	8	Unmodified	_MELWADLQ_					0	0	0			REV__ENSG00000080503|ENST00000349721|SMARCA2	REV__ENSG00000080503|ENST00000349721|SMARCA2	MULTI-MSMS	OvCa99_classI_Rep5	1	503.2418518066406	2	503.239135	1004.46372	-0.42944	-0.00021611	2.875	0.0014468	2.4455	0.0012307	503.24026283170303	55.952	0.41224	55.952	55.682	56.094	0					26	9	3	0	0	0	0.53531	1	4609	4609		73.975	2.679	1	1016800	+		37779	17055	31175	31200	41165	41165					-0.03833567591186693
MELWSLMHF	9	Unmodified	_MELWSLMHF_					0	0	0		SRCAP|p.L2600Afs*30|1|0.06|ENSG00000080603|chr16:30737837-30737838|-/G|frameshift_variant;nc|ENSG00000080603|Q6ZRS2-3|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;ENSG00000080603|ENST00000262518|SRCAP	SRCAP|p.L2600Afs*30|1|0.06|ENSG00000080603|chr16:30737837-30737838|-/G|frameshift_variant	SRCAP|p.L2600Afs*30|1|0.06|ENSG00000080603|chr16:30737837-30737838|-/G|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.7950439453125	2	597.277738	1192.54092	-2.4324	-0.0014528	2.5234	0.0015072	0.091001	5.4353E-05	597.2786164791663	104.19	0.29958	104.19	104.02	104.32	0					13	6	3	0	0	0	0.027462	1	11664	11664		38.806	15.283	1	171920			37780	1638	31176	31201	41166	41166					-0.04764672646501822
MEMRKRVE	8	Unmodified	_MEMRKRVE_					0	0	0			REV__chr2:231711368-231712443|256|12.32|0.01|9.72|+|0|None,PTMA|1	REV__chr2:231711368-231712443|256|12.32|0.01|9.72|+|0|None,PTMA|1	MULTI-MSMS	OvCa99_classI_Rep5	1	539.7822265625	2	539.778436	1077.54232	2.6932	0.0014537	2.0335	0.0010976	4.7267	0.0025514	539.7793151653044	90.32	0.63647	90.32	90.101	90.738	0					37	15	4	0	0	0	0.38598	1	9702	9702		90.777	13.459	1	3340100	+		37781	15996	31177	31202	41167	41167					0.006649614422940431
MEMVHCFVAL	10	Unmodified	_MEMVHCFVAL_					0	0	0		ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	MULTI-MSMS	OvCa9_classI_Rep2	2	590.2684936523438	2	590.271598	1178.52864	-5.3391	-0.0031515	0.43408	0.00025623	-4.905	-0.0028953	590.2717322598501	159.2	1.2398	158.97	158.63	159.87	-0.22697					77	24	4	0	0	0	0.76627	1	16250	16250		23.042	0	1	170140			37782	8217	31178	31203	41168	41168					-0.05348032381152734
MEMVHCFVAL	10	Unmodified	_MEMVHCFVAL_					0	0	0		ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	MULTI-MSMS	OvCa9_classI_Rep3	3	590.2689819335938	2	590.271598	1178.52864	-7.7051	-0.0045481	2.7898	0.0016467	-4.9153	-0.0029013	590.2732006658329	159.89	2.9332	158.56	157.96	160.89	-1.3316					148	58	4	0	0	0	0.64063	1	13925	13925		37.159	2.0071	1	239760			37783	8217	31178	31203	41169	41169					-0.05348032381152734
MEMVHCFVAL	10	Unmodified	_MEMVHCFVAL_					0	0	0		ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	MULTI-MSMS	OvCa9_classI_Rep4_	4	590.2681274414062	2	590.271598	1178.52864	-6.4648	-0.003816	1.5695	0.00092645	-4.8953	-0.0028895	590.272448811586	160.41	2.659	158.8	158.24	160.9	-1.6101					174	63	4	0	0	0	0.62668	1	15904	15904		38.806	0	1	264810			37784	8217	31178	31203	41170	41170					-0.05348032381152734
MEMVLIKLN	9	Oxidation (M)	_MEM(Oxidation (M))VLIKLN_		MEM(1)VLIKLN		M(-55)EM(55)VLIKLN	0	0	1			REV__ENST00000318010.12_1_15:42600485-42602599:+|nuORF	REV__ENST00000318010.12_1_15:42600485-42602599:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	553.28515625	2	553.801045	1105.58754	-0.62556	-0.00034644	1.8742	0.0010379	1.2487	0.00069151	553.8022783776368	109.57	1.1036	108.43	107.88	108.98	-1.1444					28	20	2	0	0	0	0.027072	1	7897	7897		113.41	6.4041	2	36293	+		37785	24418	31179	31204	41171	41171		558			0.0389676718480132
MEMVLIKLN	9	Oxidation (M)	_MEM(Oxidation (M))VLIKLN_		MEM(1)VLIKLN		M(-46)EM(46)VLIKLN	0	0	1			REV__ENST00000318010.12_1_15:42600485-42602599:+|nuORF	REV__ENST00000318010.12_1_15:42600485-42602599:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.2854614257812	2	553.801045	1105.58754	1.033	0.0005721	-0.17794	-9.8543E-05	0.8551	0.00047356	553.8005153919846	110.12	1.1048	108.52	108.23	109.33	-1.6011					28	20	2	0	0	0	0.027342	1	10144	10144		125.81	38.06	2	32064	+		37786	24418	31179	31204	41172	41172		558			0.0389676718480132
MENEKRVLN	9	Unmodified	_MENEKRVLN_					0	0	0		ENST00000269080.6_1_17:66937053-66938107:-|nuORF	ENST00000269080.6_1_17:66937053-66938107:-|nuORF	ENST00000269080.6_1_17:66937053-66938107:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.801513671875	2	566.792598	1131.57064	0.033783	1.9148E-05	1.442	0.00081732	1.4758	0.00083647	566.793249019304	104.88	0.25944	104.88	104.74	105	0					8	5	2	0	0	0	0.027462	1	11758	11758		25.574	7.312	1	383870			37787	9979	31180	31205	41173	41173					0.010119826232312334
MENFTTQRH	9	Unmodified	_MENFTTQRH_					0	0	0		ENST00000423241.6_1_2:201983276-201983414:+|nuORF	ENST00000423241.6_1_2:201983276-201983414:+|nuORF	ENST00000423241.6_1_2:201983276-201983414:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.3267211914062	2	582.266747	1162.51894	2.2582	0.0013149	-0.66004	-0.00038432	1.5982	0.00093058	582.2663607554354	99.384	0.82007	99.384	98.916	99.736	0					49	19	5	0	0	0	0.027462	1	10927	10927		21.96	0	1	4939800			37788	11701	31181	31206	41174	41174					-0.05581761070698121
MENISTKGLD	10	Unmodified	_MENISTKGLD_					0	0	0		nc|ENSG00000111679|P29350-2|PTPN6;ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6;ENST00000539029.5_1_12:7068505-7070080:+|nuORF	nc|ENSG00000111679|P29350-2|PTPN6	nc|ENSG00000111679|P29350-2|PTPN6	MULTI-SECPEP	OvCa9_classI_Rep2	2	553.2849731445312	2	554.271164	1106.52777	0.8224	0.00045583	3.4465	0.0019103	4.2689	0.0023661	554.2726084288805	108.19	2.4566	107.97	107.05	109.51	-0.22498					63	49	2	0	0	0	0.02665	1	10219	10219		68.846	0	1	28438			37789	2843	31182	31207	41175	41175					-0.021228322248816767
MENKIRSTL	9	Unmodified	_MENKIRSTL_					0	0	0		ENSG00000077549|ENST00000264202|CAPZB;nc|ENSG00000077549|P47756-1|CAPZB;ZCCHC17-CAPZB|1|fusion;ZCCHC17-CAPZB|2|fusion	ENSG00000077549|ENST00000264202|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	MULTI-MSMS	OvCa99_classI_Rep5	1	546.2985229492188	2	546.297516	1090.58048	-0.86435	-0.00047219	0.93381	0.00051014	0.06946	3.7946E-05	546.2978481372761	49.525	0.82743	49.525	49.245	50.073	0					37	18	3	0	0	0	0.075618	1	3710	3710		104.01	2.4129	1	1526200			37790	1576	31183	31208	41176	41176					0.038811706285969194
MENKIRSTL	9	Unmodified	_MENKIRSTL_					0	0	0		ENSG00000077549|ENST00000264202|CAPZB;nc|ENSG00000077549|P47756-1|CAPZB;ZCCHC17-CAPZB|1|fusion;ZCCHC17-CAPZB|2|fusion	ENSG00000077549|ENST00000264202|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	546.297516	1090.58048	-0.97545	-0.00053288	-2.4591	-0.0013434	-3.4345	-0.0018763	546.2966666477857	52.864	0.49253	49.656	49.451	49.944	-3.208	0.065136	-0.0032395	NaN	104.01	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24860			37791	1576	31183	31208							0.038811706285969194
MENLKALLK	9	Unmodified	_MENLKALLK_					0	0	0		ENSG00000100218|ENST00000216036|RSPH14	ENSG00000100218|ENST00000216036|RSPH14	ENSG00000100218|ENST00000216036|RSPH14	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7962036132812	2	530.315177	1058.6158	2.2671	0.0012023	-2.1039	-0.0011157	0.1632	8.6548E-05	530.3141521153573	76.212	0.60258	76.212	75.956	76.558	0					22	14	2	0	0	0	0.027441	1	7633	7633		37.159	0	1	165960			37792	2026	31184	31209	41177	41177					0.08883833156369292
MENLNKLRN	9	Unmodified	_MENLNKLRN_					0	0	0		tr|A0A7D7A564|A0A7D7A564_9CLOTendopeptidaseLaOS=ClostridiumintestinaleOX=36845GN=lonBPE=3SV=1	tr|A0A7D7A564|A0A7D7A564_9CLOTendopeptidaseLaOS=ClostridiumintestinaleOX=36845GN=lonBPE=3SV=1	tr|A0A7D7A564|A0A7D7A564_9CLOTendopeptidaseLaOS=ClostridiumintestinaleOX=36845GN=lonBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	566.2981567382812	2	566.30059	1130.58663	-0.94412	-0.00053466	-4.3488	-0.0024628	-5.293	-0.0029974	566.2979066209101	99.965	2.3305	99.134	98.418	100.75	-0.83051					77	46	4	0	0	0	0.33652	1	9132	9132		58.782	0.53571	1	343040			37793	36159	31185	31210	41178	41178					0.026556888601135142
MENPGCHVVD	10	Unmodified	_MENPGCHVVD_					0	0	0		ENSG00000134326|ENST00000256722|CMPK2	ENSG00000134326|ENST00000256722|CMPK2	ENSG00000134326|ENST00000256722|CMPK2	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.7261352539062	2	550.728609	1099.44266	-0.82741	-0.00045568	-1.7147	-0.00094433	-2.5421	-0.0014	550.7273509139382	120.77	1.3815	119.42	119.13	120.51	-1.3479					63	26	4	0	0	0	0.64697	1	11357	11357		36.447	2.2742	1	196810			37794	4285	31186	31211	41179	41179					-0.10307900962334315
MENPLPLVE	9	Unmodified	_MENPLPLVE_					0	0	0			REV__ENST00000263168.3_1_1:113161809-113162112:+|nuORF	REV__ENST00000263168.3_1_1:113161809-113162112:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	521.2673950195312	2	521.267893	1040.52123	2.8341	0.0014773	-3.9728	-0.0020709	-1.1388	-0.00059361	521.26569227539	88.114	0.8423	88.114	87.794	88.637	0					36	19	2	0	0	0	0.37135	1	9371	9371		54.776	3.4409	1	6398200	+		37795	23990	31187	31212	41180	41180					0.002592746144046032
MEPAGKGRAL	10	Unmodified	_MEPAGKGRAL_					0	0	0		ENST00000549193.5_1_12:51399391-51402921:-|nuORF;ENST00000550995.5_1_12:51399391-51404511:-|nuORF	ENST00000549193.5_1_12:51399391-51402921:-|nuORF	ENST00000549193.5_1_12:51399391-51402921:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	515.7819213867188	2	515.279126	1028.5437	-0.13485	-6.9483E-05	0.97656	0.0005032	0.84171	0.00043372	515.7808363494132	73.533	1.9724	73.533	73.074	75.046	0					144	49	5	0	0	0	0.6104	1	7193	7193		40.778	3.6191	1	16120000			37796	13568	31188	31213	41181	41181					0.03056918802690234
MEPKDMLIK	9	Unmodified	_MEPKDMLIK_					0	0	0			REV__ENST00000534807.1_1_17:45673771-45679230:+|nuORF	REV__ENST00000534807.1_1_17:45673771-45679230:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.7963256835938	2	552.79322	1103.57189	-0.68574	-0.00037907	1.9124	0.0010572	1.2267	0.0006781	552.7943065075228	70.042	1.1691	66.561	66.105	67.275	-3.4812					63	23	4	0	0	0	0.17606	2	5284	5273;5284		80.455	10.827	1	901190	+		37797	19723	31189	31214	41182;41183	41183					0.02424480667741591
MEPVTQPEE	9	Unmodified	_MEPVTQPEE_					0	0	0			REV__ENSG00000177606|ENST00000371222|JUN	REV__ENSG00000177606|ENST00000371222|JUN	MULTI-MSMS	OvCa99_classI_Rep5	1	530.2383422851562	2	530.23679	1058.45903	0.989	0.00052441	1.4894	0.00078976	2.4784	0.0013142	530.2373937622879	132.55	0.94205	132.55	132.23	133.17	0					47	19	3	0	0	0	0.44568	1	15407	15407		47.657	1.7054	1	280670	+		37798	22018	31190	31215	41184	41184					-0.06786496524591712
MEQARHTV	8	Unmodified	_MEQARHTV_					0	0	0			REV__ENSG00000204217|ENST00000374580|BMPR2	REV__ENSG00000204217|ENST00000374580|BMPR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.2928161621094	2	486.240001	970.465449	2.078	0.0010104	4.22	0.0020519	6.2979	0.0030623	486.2419882757809	137.01	0.33656	137.01	136.92	137.26	0					9	6	2	0	0	0	0.028476	1	15987	15987		47.657	0	1	23161	+		37799	23132	31191	31216	41185	41185					-0.02096513782544207
MEQELQPLT	9	Unmodified	_MEQELQPLT_					0	0	0		ENST00000379335.7_1_6:13272943-13273033:+|nuORF	ENST00000379335.7_1_6:13272943-13273033:+|nuORF	ENST00000379335.7_1_6:13272943-13273033:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	544.3031005859375	2	544.768257	1087.52196	-0.63797	-0.00034755	-0.06385	-3.4783E-05	-0.70182	-0.00038233	544.7681999571674	77.974	1.0998	75.621	75.402	76.501	-2.3527					26	21	2	0	0	0	0.027301	1	4165	4165		115.49	26.851	1	35331			37800	11124	31192	31217	41186	41186					-0.01829930736539609
MEQIKKLSL	9	Unmodified	_MEQIKKLSL_					0	0	0		tr|A0A553SUK7|A0A553SUK7_NIACIRodshape-determiningproteinRodAOS=NialliacirculansOX=1397GN=CEQ21_01370PE=4SV=1	tr|A0A553SUK7|A0A553SUK7_NIACIRodshape-determiningproteinRodAOS=NialliacirculansOX=1397GN=CEQ21_01370PE=4SV=1	tr|A0A553SUK7|A0A553SUK7_NIACIRodshape-determiningproteinRodAOS=NialliacirculansOX=1397GN=CEQ21_01370PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.3197021484375	2	545.32046	1088.62637	-0.88078	-0.0004803	-2.9723	-0.0016209	-3.8531	-0.0021012	545.3187982424363	63.028	1.7371	59.553	59.291	61.028	-3.475					105	35	5	0	0	0	0.047422	3	4418	4418;4430;4454		120.31	5.4114	1	2714300			37801	34618	31193	31218	41187;41188;41189	41187					0.08559815810826876
MEQIRYLHEEF	11	Unmodified	_MEQIRYLHEEF_					0	0	0		ENST00000561573.1_1_15:90806992-90815017:+|nuORF;NGRN|p.S114Qfs*3|1|0.04|ENSG00000182768|chr15:90271250-90271251|-/G|frameshift_variant;ENSG00000182768|ENST00000379095|NGRN	ENST00000561573.1_1_15:90806992-90815017:+|nuORF	ENST00000561573.1_1_15:90806992-90815017:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.7646179199219	3	498.906376	1493.6973	-0.43895	-0.000219	4.1782	0.0020846	3.7393	0.0018656	499.2435075969689	29.612	0.34883	29.612	29.536	29.885	0					9	6	2	0	0	0	0.026321	1	1090	1090		6.3209	0	1	26201			37802	13758	31194	31219	41190	41190					-0.029801359423345275
MEQKLQQEE	9	Unmodified	_MEQKLQQEE_					0	0	0		ENSG00000166439|ENST00000299563|RNF169	ENSG00000166439|ENST00000299563|RNF169	ENSG00000166439|ENST00000299563|RNF169	MULTI-MSMS	OvCa99_classI_Rep5	1	582.2782592773438	2	581.774071	1161.53359	2.1077	0.0012262	2.2474	0.0013075	4.355	0.0025337	581.7753225292454	86.206	2.3866	86.206	85.912	88.298	0					149	57	3	0	0	0	0.16524	1	9142	9142		82.305	5.5309	1	27278000			37803	6680	31195	31220	41191	41191					-0.040717337132036846
MEQLHRYTK	9	Unmodified	_MEQLHRYTK_					0	0	0		nc|ENSG00000109189|P62068-2|USP46;ENST00000514536.5_1_4:53464769-53497293:-|nuORF;nc|ENSG00000109189|P62068-4|USP46;nc|ENSG00000109189|P62068-3|USP46;ENSG00000109189|ENST00000441222|USP46	nc|ENSG00000109189|P62068-2|USP46	nc|ENSG00000109189|P62068-2|USP46	MULTI-SECPEP	OvCa99_classI_Rep5	1	603.8892822265625	2	603.308415	1204.60228	2.8554	0.0017227	1.9881	0.0011994	4.8435	0.0029221	603.3093510042419	89.282	0.43771	89.282	89.119	89.556	0					23	10	3	0	0	0	0.027462	1	9547	9547		35.618	8.9254	1	738760			37804	2704	31196	31221	41192	41192					0.008159753771451506
MERAKRTN	8	Unmodified	_MERAKRTN_					0	0	0			REV__ENSG00000118242|ENST00000263268|MREG	REV__ENSG00000118242|ENST00000263268|MREG	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.7831115722656	2	503.26655	1004.51855	1.1903	0.00059904	0.49521	0.00024922	1.6855	0.00084826	503.2668154492732	144.59	0.38573	144.59	144.4	144.79	0					13	7	2	0	0	0	0.028476	1	16887	16887		35.618	0	1	34582	+		37805	18386	31197	31222	41193	41193					0.016468640001107815
MERAQCLRK	9	Unmodified	_MERAQCLRK_					0	0	0		nc|ENSG00000232560|A6NIU2|LINC01549	nc|ENSG00000232560|A6NIU2|LINC01549	nc|ENSG00000232560|A6NIU2|LINC01549	MULTI-SECPEP	OvCa9_classI_Rep2	2	567.3194580078125	2	567.79716	1133.57977	0.046772	2.6557E-05	1.5511	0.00088071	1.5979	0.00090726	568.2986606651106	92.758	0.31039	91.59	91.446	91.756	-1.168					7	5	2	0	0	0	0.027432	1	8263	8263		67.494	19.836	1	9343.8			37806	15330	31198	31223	41194	41194					0.018320527078913074
MERASVCMPE	10	Oxidation (M)	_MERASVCM(Oxidation (M))PE_		MERASVCM(1)PE		M(-73)ERASVCM(73)PE	0	0	1			REV__L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|348|3|anti-sense	REV__L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|348|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	584.7468872070312	2	584.743402	1167.47225	0.73145	0.00042771	1.8835	0.0011013	2.6149	0.0015291	584.7444128436945	123.92	1.2327	123.92	123.61	124.84	0					57	26	3	0	0	0	0.1722	1	14289	14289		98.629	29.002	2	689720	+		37807	15923	31199	31224	41195	41195		386			-0.10478705008517863
MEREKEQFR	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MEREKEQFR_					1	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	OvCa99_classI_Rep5	1	432.2124938964844	3	432.2118	1293.61357	-0.022456	-9.7056E-06	0.019791	8.5539E-06	-0.0026647	-1.1517E-06	432.2116842742857	49.097	0.65512	49.097	48.807	49.462	0					41	14	4	0	0	0	0.12184	1	3641	3641		91.265	17.424	1	2132000			37808	3541	31200	31225	41196	41196					-0.02149247319357528
MEREKEQFRKL	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MEREKEQFRKL_					1	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	OvCa99_classI_Rep5	1	512.6063232421875	3	512.604809	1534.7926	-0.25267	-0.00012952	-0.65806	-0.00033732	-0.91073	-0.00046684	512.604519426878	60.297	0.98911	60.297	60.039	61.028	0					67	23	5	0	0	0	0.092159	1	5250	5250		98.754	38.064	1	10545000			37809	3541	31201	31226	41197	41197					0.046592172487180505
MERGDGKGGGP	11	Unmodified	_MERGDGKGGGP_					0	0	0		ENST00000607425.1_1_1:214163097-214169868:+|nuORF	ENST00000607425.1_1_1:214163097-214169868:+|nuORF	ENST00000607425.1_1_1:214163097-214169868:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.3094482421875	2	530.745647	1059.47674	-0.43101	-0.00022876	1.1606	0.00061599	0.72961	0.00038724	530.7462095445319	48.413	0.51416	48.413	48.248	48.762	0					21	11	3	0	0	0	0.025541	1	3530	3530		70.816	2.0294	1	264950			37810	14285	31202	31227	41198	41198					-0.050617364790468855
MERGSGIIM	9	Unmodified	_MERGSGIIM_					0	0	0		tr|A0A7D6ZHP2|A0A7D6ZHP2_9CLOT4-alpha-glucanotransferaseOS=ClostridiumintestinaleOX=36845GN=malQPE=3SV=1	tr|A0A7D6ZHP2|A0A7D6ZHP2_9CLOT4-alpha-glucanotransferaseOS=ClostridiumintestinaleOX=36845GN=malQPE=3SV=1	tr|A0A7D6ZHP2|A0A7D6ZHP2_9CLOT4-alpha-glucanotransferaseOS=ClostridiumintestinaleOX=36845GN=malQPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	497.2472839355469	2	497.246437	992.478322	1.7023	0.00084647	0.20635	0.0001026	1.9087	0.00094908	497.2463886592927	108.74	0.91707	108.74	108.5	109.41	0					43	20	4	0	0	0	0.33652	1	12300	12300		58.782	3.2778	1	3270500			37811	35584	31203	31228	41199	41199					-0.018218187146658238
MERGSGIIM	9	Unmodified	_MERGSGIIM_					0	0	0		tr|A0A7D6ZHP2|A0A7D6ZHP2_9CLOT4-alpha-glucanotransferaseOS=ClostridiumintestinaleOX=36845GN=malQPE=3SV=1	tr|A0A7D6ZHP2|A0A7D6ZHP2_9CLOT4-alpha-glucanotransferaseOS=ClostridiumintestinaleOX=36845GN=malQPE=3SV=1	tr|A0A7D6ZHP2|A0A7D6ZHP2_9CLOT4-alpha-glucanotransferaseOS=ClostridiumintestinaleOX=36845GN=malQPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	497.246437	992.478322	-0.13375	-6.6505E-05	-2.9081	-0.001446	-3.0418	-0.0015125	497.244769075065	110.07	0.41927	108.93	108.66	109.08	-1.1444	0.042723	-0.0023547	NaN	58.782	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17074			37812	35584	31203	31228							-0.018218187146658238
MERGSGIIM	9	Unmodified	_MERGSGIIM_					0	0	0		tr|A0A7D6ZHP2|A0A7D6ZHP2_9CLOT4-alpha-glucanotransferaseOS=ClostridiumintestinaleOX=36845GN=malQPE=3SV=1	tr|A0A7D6ZHP2|A0A7D6ZHP2_9CLOT4-alpha-glucanotransferaseOS=ClostridiumintestinaleOX=36845GN=malQPE=3SV=1	tr|A0A7D6ZHP2|A0A7D6ZHP2_9CLOT4-alpha-glucanotransferaseOS=ClostridiumintestinaleOX=36845GN=malQPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	497.246437	992.478322	0.68388	0.00034006	-3.2083	-0.0015953	-2.5244	-0.0012552	497.2445683661295	110.59	0.52585	108.99	108.7	109.23	-1.6011	0.10441	-0.0026533	NaN	58.782	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29680			37813	35584	31203	31228							-0.018218187146658238
MERGWLVV	8	Unmodified	_MERGWLVV_					0	0	0		ENST00000361532.9_1_1:150601538-150601592:-|nuORF	ENST00000361532.9_1_1:150601538-150601592:-|nuORF	ENST00000361532.9_1_1:150601538-150601592:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.2667236328125	2	495.265487	988.516422	-0.69475	-0.00034408	2.6861	0.0013303	1.9913	0.00098623	495.2666589432614	69.962	0.92888	66.481	66.201	67.13	-3.4812					30	18	2	0	0	0	0.30448	1	5267	5267		106.42	1.6687	1	416480			37814	10799	31204	31229	41200	41200					0.02170435262303272
MERHLKIHT	9	Unmodified	_MERHLKIHT_					0	0	0		ZFP64|p.T573Hfs*41|1|0.12|ENSG00000020256|chr20:52152476-52152477|-/A|frameshift_variant;nc|ENSG00000020256|Q9NTW7-6|ZFP64;nc|ENSG00000020256|Q9NTW7-4|ZFP64;ENSG00000020256|ENST00000216923|ZFP64;nc|ENSG00000020256|Q9NTW7-3|ZFP64;ZFP64|p.V458Sfs*156|1|0.05|ENSG00000020256|chr20:52152820-52152821|-/T|frameshift_variant;nc|ENSG00000020256|Q9NTW7|ZFP64;ENST00000477786.5_1_20:50705508-50792496:-|nuORF	ZFP64|p.T573Hfs*41|1|0.12|ENSG00000020256|chr20:52152476-52152477|-/A|frameshift_variant	ZFP64|p.T573Hfs*41|1|0.12|ENSG00000020256|chr20:52152476-52152477|-/A|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	582.2847900390625	2	582.81895	1163.62335	-1.2225	-0.00071252	3.8956	0.0022704	2.6731	0.0015579	582.8211367802893	46.599	0.46567	43.526	43.241	43.707	-3.0724					19	8	3	0	0	0	0.027433	1	2463	2463		45.972	5.1941	1	307530			37815	1022	31205	31230	41201	41201					0.04807985476668364
MERMGEPSQDP	11	Unmodified	_MERMGEPSQDP_					0	0	0		ENSG00000138162|ENST00000369005|TACC2;TACC2|p.S2567Ifs*13|1|0.16|ENSG00000138162|chr10:122226455-122226456|-/A|frameshift_variant;nc|ENSG00000138162|O95359-3|TACC2	ENSG00000138162|ENST00000369005|TACC2	ENSG00000138162|ENST00000369005|TACC2	MULTI-MSMS	OvCa99_classI_Rep5	1	638.7699584960938	2	638.768462	1275.52237	0.83936	0.00053616	1.5886	0.0010147	2.4279	0.0015509	638.7695251761475	160.81	0.70424	160.81	160.56	161.26	0					30	13	3	0	0	0	0.7046	1	18865	18865		28.081	2.5074	1	151880			37816	4664	31206	31231	41202	41202					-0.10436879078997663
MERNSEIVE	9	Unmodified	_MERNSEIVE_					0	0	0			REV__tr|A0A553SFY3|A0A553SFY3_NIACIMagnesiumtransportproteinCorAOS=NialliacirculansOX=1397GN=corAPE=3SV=1	REV__tr|A0A553SFY3|A0A553SFY3_NIACIMagnesiumtransportproteinCorAOS=NialliacirculansOX=1397GN=corAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.762451171875	2	553.760963	1105.50737	-0.5787	-0.00032046	0.25419	0.00014076	-0.32451	-0.0001797	553.7609951664953	80.881	1.3184	78.17	77.81	79.128	-2.7106					67	26	4	0	0	0	0.14998	2	6617	6617;6628		84.916	6.0743	1	930780	+		37817	29636	31207	31232	41203;41204	41203					-0.04116002884688896
MERNSLCMIP	10	Unmodified	_MERNSLCMIP_					0	0	0		ENST00000381341.6_1_2:15743997-15744603:+|nuORF	ENST00000381341.6_1_2:15743997-15744603:+|nuORF	ENST00000381341.6_1_2:15743997-15744603:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.7905883789062	2	597.277412	1192.54027	1.6595	0.00099117	-2.6189	-0.0015642	-0.95942	-0.00057304	597.2756522273642	93.308	0.62019	93.308	93.053	93.673	0					19	14	2	0	0	0	0.026659	1	10135	10135		54.776	0	1	773720			37818	11164	31208	31233	41205	41205					-0.04829835357850243
MERRREERKKR	11	Unmodified	_MERRREERKKR_					0	0	0			REV__ENST00000524944.5_1_11:65305869-65306034:+|nuORF	REV__ENST00000524944.5_1_11:65305869-65306034:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7665405273438	3	525.298713	1572.87431	-0.6999	-0.00036766	1.4961	0.00078592	0.79624	0.00041826	525.2984847704413	29.495	0.24968	29.495	29.387	29.636	0					5	4	2	0	0	0	0.026512	1	1046	1046		8.7993	2.1397	1	6394.3	+		37819	19773	31209	31234	41206	41206					0.11078757451150523
MERRRERRERR	11	Unmodified	_MERRRERRERR_					0	0	0		ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-3|SPTBN4	ENSG00000160460|ENST00000598249|SPTBN4	ENSG00000160460|ENST00000598249|SPTBN4	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.8795471191406	4	408.228928	1628.88661	0.39245	0.00016021	3.3742	0.0013775	3.7667	0.0015377	408.4809747559102	59.496	0.34623	59.496	59.34	59.686	0					15	8	2	0	0	0	0.026505	1	5147	5147		5.6988	0	1	348060			37820	6068	31210	31235	41207	41207					0.09731793914215814
MERSEELN	8	Unmodified	_MERSEELN_					0	0	0		ENSG00000196449|ENST00000373044|YRDC	ENSG00000196449|ENST00000373044|YRDC	ENSG00000196449|ENST00000373044|YRDC	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.8193359375	2	504.226756	1006.43896	1.1088	0.00055909	-3.9516	-0.0019925	-2.8428	-0.0014334	504.22465304764546	138.94	1.0514	138.94	138.69	139.74	0					53	21	4	0	0	0	0.028476	1	16283	16283		60.972	23.813	1	387900			37821	8610	31211	31236	41208	41208					-0.06400247464534914
MESDFEQKL	9	Unmodified	_MESDFEQKL_					0	0	0		ENSG00000131504|ENST00000389054|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;nc|ENSG00000131504|O60610-2|DIAPH1	ENSG00000131504|ENST00000389054|DIAPH1	ENSG00000131504|ENST00000389054|DIAPH1	MULTI-MSMS	OvCa99_classI_Rep5	1	563.760498046875	2	563.757889	1125.50123	2.3795	0.0013415	-0.20217	-0.00011398	2.1774	0.0012275	563.7574858443838	77.561	0.63153	77.561	77.336	77.968	0					30	14	3	0	0	0	0.029147	1	7831	7831		136.27	22.857	1	1290800			37822	4073	31212	31237	41209	41209					-0.056505211161947955
MESDFEQKL	9	Unmodified	_MESDFEQKL_					0	0	0		ENSG00000131504|ENST00000389054|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;nc|ENSG00000131504|O60610-2|DIAPH1	ENSG00000131504|ENST00000389054|DIAPH1	ENSG00000131504|ENST00000389054|DIAPH1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	563.757889	1125.50123	0.052674	2.9695E-05	-0.37746	-0.00021279	-0.32478	-0.0001831	563.7576056880321	79.686	0.70651	77.346	77.103	77.81	-2.3399	-0.13085	0.00013724	NaN	136.27	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26013			37823	4073	31212	31237							-0.056505211161947955
MESDFEQKL	9	Unmodified	_MESDFEQKL_					0	0	0		ENSG00000131504|ENST00000389054|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;nc|ENSG00000131504|O60610-2|DIAPH1	ENSG00000131504|ENST00000389054|DIAPH1	ENSG00000131504|ENST00000389054|DIAPH1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	563.757889	1125.50123	0.6087	0.00034316	-1.3769	-0.00077623	-0.76819	-0.00043307	563.756945581822	80.234	0.54132	77.524	77.269	77.81	-2.7106	0.046553	-0.00098964	NaN	136.27	19	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34635			37824	4073	31212	31237							-0.056505211161947955
MESEQYALK	9	Unmodified	_MESEQYALK_					0	0	0			REV__ZSWIM8|p.V885M|1|0.18|ENSG00000214655|chr10:73794174-73794174|G/A|missense_variant	REV__ZSWIM8|p.V885M|1|0.18|ENSG00000214655|chr10:73794174-73794174|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.7509765625	2	549.760432	1097.50631	1.0714	0.00058902	4.3653	0.0023999	5.4367	0.0029889	549.7628080960449	144.44	1.624	144.44	143.07	144.69	0					38	32	2	0	0	0	0.027462	1	16863	16863		45.972	19.909	1	30823	+		37825	32782	31213	31238	41210	41210					-0.03854217253592651
MESEQYALK	9	Unmodified	_MESEQYALK_					0	0	0			REV__ZSWIM8|p.V885M|1|0.18|ENSG00000214655|chr10:73794174-73794174|G/A|missense_variant	REV__ZSWIM8|p.V885M|1|0.18|ENSG00000214655|chr10:73794174-73794174|G/A|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	549.760432	1097.50631	-1.5648	-0.00086029	5.4062	0.0029721	3.8414	0.0021118	549.7631698080913	144.32	1.3885	144.09	143.54	144.93	-0.22696	-0.022349	-0.00069341	NaN	45.972	63	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48931	+		37826	32782	31213	31238							-0.03854217253592651
MESEQYALK	9	Unmodified	_MESEQYALK_					0	0	0			REV__ZSWIM8|p.V885M|1|0.18|ENSG00000214655|chr10:73794174-73794174|G/A|missense_variant	REV__ZSWIM8|p.V885M|1|0.18|ENSG00000214655|chr10:73794174-73794174|G/A|missense_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	549.760432	1097.50631	-3.662	-0.0020132	7.3345	0.0040322	3.6725	0.002019	549.7642898335295	144.99	1.7389	144.02	143.44	145.18	-0.97299	-0.098349	0.0014268	NaN	45.972	73	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83107	+		37827	32782	31213	31238							-0.03854217253592651
MESFFGASEPI	11	Unmodified	_MESFFGASEPI_					0	0	0			REV__ENSG00000163703|ENST00000452070|CRELD1	REV__ENSG00000163703|ENST00000452070|CRELD1	MULTI-MSMS	OvCa99_classI_Rep5	1	607.7740478515625	2	607.773539	1213.53253	1.1083	0.0006736	-0.60651	-0.00036862	0.5018	0.00030498	607.7728571494674	157.46	1.6092	157.46	157	158.61	0					76	32	4	0	0	0	0.67529	1	18459	18459		37.812	0.65241	1	260490	+		37828	20876	31214	31239	41211	41211					-0.06569948082096744
MESGDDDDD	9	Unmodified	_MESGDDDDD_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.7649841308594	2	499.648201	997.28185	0.89061	0.00044499	0.79754	0.00039849	1.6881	0.00084348	499.6489584463084	127.22	0.25614	126.15	126.02	126.27	-1.0715					6	4	2	0	0	0	0.027462	1	9952	9952		23.042	10.836	1	9928.9	+		37829	17152	31215	31240	41212	41212					-0.21689996865393368
MESKINKSL	9	Unmodified	_MESKINKSL_					0	0	0		tr|A0A7D6W0D5|A0A7D6W0D5_9CLOTSmallribosomalsubunitbiogenesisGTPaseRsgAOS=ClostridiumintestinaleOX=36845GN=rsgAPE=3SV=1	tr|A0A7D6W0D5|A0A7D6W0D5_9CLOTSmallribosomalsubunitbiogenesisGTPaseRsgAOS=ClostridiumintestinaleOX=36845GN=rsgAPE=3SV=1	tr|A0A7D6W0D5|A0A7D6W0D5_9CLOTSmallribosomalsubunitbiogenesisGTPaseRsgAOS=ClostridiumintestinaleOX=36845GN=rsgAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	525.2843017578125	2	525.286617	1048.55868	-0.52191	-0.00027415	-3.2946	-0.0017306	-3.8165	-0.0020047	525.2848982861796	114.53	2.2405	113.48	112.84	115.08	-1.055					123	44	4	0	0	0	0.44248	1	8509	8509		47.96	9.2059	1	908300			37830	35376	31216	31241	41213	41213					0.03634365880043333
MESKLHRQAL	10	Unmodified	_MESKLHRQAL_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MSMS	OvCa9_classI_Rep2	2	606.8328247070312	2	606.829514	1211.64448	0.87439	0.00053061	4.315	0.0026185	5.1894	0.0031491	606.8318108251257	87.469	2.3648	86.038	85.642	88.007	-1.4311					115	47	6	0	0	0	0.55713	2	7655	7655;7669		16.007	0	1	1990900			37831	8158	31217	31242	41214;41215	41214					0.04711950785554109
MESKLHRQAL	10	Unmodified	_MESKLHRQAL_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MSMS	OvCa9_classI_Rep3	3	606.8331298828125	2	606.829514	1211.64448	1.2168	0.00073836	3.6258	0.0022002	4.8425	0.0029386	606.8317229441808	88.223	2.4058	86.092	85.803	88.209	-2.1309					100	47	3	0	0	0	0.44671	1	5390	5390		33.922	0	1	3192200			37832	8158	31217	31242	41216	41216					0.04711950785554109
MESLAARKV	9	Unmodified	_MESLAARKV_					0	0	0			REV__nc|ENSG00000078304|Q13362-2|PPP2R5C	REV__nc|ENSG00000078304|Q13362-2|PPP2R5C	MULTI-MSMS	OvCa99_classI_Rep5	1	502.77838134765625	2	502.781502	1003.54845	1.6563	0.00083278	-2.1839	-0.001098	-0.52757	-0.00026525	502.7803045911361	101.24	1.0168	101.24	101.02	102.04	0					43	23	3	0	0	0	0.38969	1	11245	11245		52.937	4.9772	1	1555600	+		37833	17023	31218	31243	41217	41217					0.04681802945447089
MESLELLY	8	Unmodified	_MESLELLY_					0	0	0		ENSG00000066557|ENST00000370952|LRRC40;ENST00000370952.3_1_1:70644576-70644624:-|nuORF	ENSG00000066557|ENST00000370952|LRRC40	ENSG00000066557|ENST00000370952|LRRC40	MULTI-MSMS	OvCa99_classI_Rep5	1	499.2495422363281	2	499.249169	996.483784	0.74535	0.00037211	-0.23137	-0.00011551	0.51397	0.0002566	499.2485983298839	158.11	1.5358	158.11	157.65	159.19	0					84	31	4	0	0	0	0.73288	1	18583	18583		35.201	0	1	141510			37834	1353	31219	31244	41218	41218					-0.014598166511973432
MESQQILQV	9	Unmodified	_MESQQILQV_					0	0	0			REV__ENSG00000183775|ENST00000512467|KCTD16	REV__ENSG00000183775|ENST00000512467|KCTD16	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.8327026367188	2	538.276249	1074.53795	-1.0375	-0.00055845	-2.3789	-0.0012805	-3.4163	-0.0018389	538.2747761646951	94.63	0.5005	92.161	91.91	92.41	-2.4685					16	9	2	0	0	0	0.027026	1	8268	8268		85.161	7.8432	1	21191	+		37835	22385	31221	31245	41219	41219					0.0036577550035872264
MESQQILQV	9	Unmodified	_MESQQILQV_					0	0	0			REV__ENSG00000183775|ENST00000512467|KCTD16	REV__ENSG00000183775|ENST00000512467|KCTD16	MULTI-MATCH	OvCa9_classI_Rep2	2		2	538.276249	1074.53795	-0.73572	-0.00039602	-2.2673	-0.0012205	-3.0031	-0.0016165	538.7766542463132	93.374	0.51741	92.206	91.953	92.471	-1.168	0.096638	0.0002242	NaN	85.161	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17511	+		37836	22385	31221	31245							0.0036577550035872264
MESQQILQV	9	Unmodified	_MESQQILQV_					0	0	0			REV__ENSG00000183775|ENST00000512467|KCTD16	REV__ENSG00000183775|ENST00000512467|KCTD16	MULTI-MATCH	OvCa9_classI_Rep3	3		2	538.276249	1074.53795	0.075655	4.0723E-05	-2.8331	-0.001525	-2.7575	-0.0014843	538.2743785825339	93.922	0.61409	91.96	91.729	92.343	-1.9617	-0.14882	-0.00038488	NaN	85.161	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33912	+		37837	22385	31221	31245							0.0036577550035872264
MESTNDYML	9	Oxidation (M)	_MESTNDYM(Oxidation (M))L_		MESTNDYM(1)L		M(-60)ESTNDYM(60)L	0	0	1			REV__UBR1|p.D1423Vfs*11|1|0.83|ENSG00000159459|chr15:42976794-42976818|GAACTAACTGAAGAAGGCTGCAGAT/-|frameshift_variant	REV__UBR1|p.D1423Vfs*11|1|0.83|ENSG00000159459|chr15:42976794-42976818|GAACTAACTGAAGAAGGCTGCAGAT/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.2664794921875	2	560.220282	1118.42601	1.5929	0.00089236	2.9264	0.0016394	4.5193	0.0025318	560.2219146052385	142.8	0.43491	142.8	142.59	143.02	0					11	8	2	0	0	0	0.027304	1	16694	16694		67.494	16.301	2	26118	+		37838	20617	31222	31246	41220	41220		481			-0.12846446638945963
METAGETKLL	10	Unmodified	_METAGETKLL_					0	0	0		ENST00000395159.6_2_14:58875544-58875700:-|nuORF	ENST00000395159.6_2_14:58875544-58875700:-|nuORF	ENST00000395159.6_2_14:58875544-58875700:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	546.781982421875	2	546.783907	1091.55326	-0.38383	-0.00020987	-2.8235	-0.0015438	-3.2073	-0.0017537	546.7822736350716	121.95	3.3566	121.74	121.33	124.69	-0.21033					164	67	4	0	0	0	0.59317	1	11873	11873		42.864	0	1	467550			37839	11283	31223	31247	41221	41221					0.01114642297534374
METASRRHLA	10	Unmodified	_METASRRHLA_					0	0	0		ENST00000359867.7_2_22:38687065-38687464:-|nuORF	ENST00000359867.7_2_22:38687065-38687464:-|nuORF	ENST00000359867.7_2_22:38687065-38687464:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	586.8335571289062	2	586.303664	1170.59277	-1.4805	-0.00086799	0.88529	0.00051905	-0.59516	-0.00034895	586.3041454996123	145.58	2.3862	144.14	143.1	145.48	-1.4357					80	45	2	0	0	0	0.026871	1	14280	14280		37.159	11.709	1	23275			37840	10759	31224	31248	41222	41222					0.01430207091630109
METASRRHLA	10	Unmodified	_METASRRHLA_					0	0	0		ENST00000359867.7_2_22:38687065-38687464:-|nuORF	ENST00000359867.7_2_22:38687065-38687464:-|nuORF	ENST00000359867.7_2_22:38687065-38687464:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	586.303664	1170.59277	-4.6731	-0.0027399	3.8529	0.002259	-0.8202	-0.00048089	586.3058962590893	145.24	1.49	144.27	143.3	144.79	-0.97301	0.062414	0.0028518	NaN	37.159	38	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14716			37841	10759	31224	31248							0.01430207091630109
METIPHEVQIR	11	Unmodified	_METIPHEVQIR_					0	0	0			REV__tr|A0A7D6ZJ05|A0A7D6ZJ05_9CLOTBiotincarboxylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09300PE=4SV=1	REV__tr|A0A7D6ZJ05|A0A7D6ZJ05_9CLOTBiotincarboxylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09300PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	451.25384521484375	3	451.571216	1351.69182	2.1405	0.00096657	3.1483	0.0014217	5.2888	0.0023883	451.90678246294146	67.631	0.39505	64.14	63.938	64.333	-3.4902					12	7	2	0	0	0	0.026145	1	4996	4996		23.378	4.1152	1	22553	+		37842	32075	31225	31249	41223	41223					0.030041852658541757
METLLGAVDK	10	Unmodified	_METLLGAVDK_					0	0	0			REV__tr|A0A553SLW9|A0A553SLW9_NIACIHydroxyethylthiazolekinaseOS=NialliacirculansOX=1397GN=thiMPE=3SV=1	REV__tr|A0A553SLW9|A0A553SLW9_NIACIHydroxyethylthiazolekinaseOS=NialliacirculansOX=1397GN=thiMPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	538.7864990234375	2	538.78645	1075.55835	1.4521	0.00078238	-2.8997	-0.0015623	-1.4476	-0.00077992	538.7850623094324	113.88	0.79858	113.88	113.53	114.33	0					43	17	4	0	0	0	0.47142	1	12996	12996		58.23	1.5089	1	488660	+		37843	30273	31226	31250	41224	41224					0.023589461601659423
METPAQLLF	9	Oxidation (M)	_M(Oxidation (M))ETPAQLLF_		M(1)ETPAQLLF		M(74)ETPAQLLF	0	0	1		nc|ENSG00000211625|A0A0C4DH25|IGKV3D-20;nc|ENSG00000239951|P01619|IGKV3-20	nc|ENSG00000211625|A0A0C4DH25|IGKV3D-20	nc|ENSG00000211625|A0A0C4DH25|IGKV3D-20	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.2681274414062	2	533.267893	1064.52123	2.3462	0.0012512	-2.1285	-0.0011351	0.21769	0.00011609	533.2664632040634	133.93	1.3312	132.4	132	133.33	-1.5257					63	26	3	0	0	0	0.21231	1	12944	12944		74.255	22.92	1	122120			37844	15283	31227	31251	41225	41225		372			-0.00844725385604761
METPAQLLF	9	Oxidation (M)	_M(Oxidation (M))ETPAQLLF_					0	0	1		nc|ENSG00000211625|A0A0C4DH25|IGKV3D-20;nc|ENSG00000239951|P01619|IGKV3-20	nc|ENSG00000211625|A0A0C4DH25|IGKV3D-20	nc|ENSG00000211625|A0A0C4DH25|IGKV3D-20	MULTI-MATCH	OvCa9_classI_Rep2	2		2	533.267893	1064.52123	-0.65349	-0.00034849	0.60672	0.00032354	-0.046773	-2.4942E-05	533.2678866039081	132.82	1.0352	132.6	132.28	133.31	-0.22696	0.11309	0.0011997	NaN	74.255	47	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102860			37845	15283	31227	31251				372			-0.00844725385604761
METPLVVKIDK	11	Unmodified	_METPLVVKIDK_					0	0	0		ENSG00000165953|ENST00000677451|SERPINA12	ENSG00000165953|ENST00000677451|SERPINA12	ENSG00000165953|ENST00000677451|SERPINA12	MULTI-MSMS	OvCa9_classI_Rep2	2	424.9129943847656	3	424.91258	1271.71591	-1.447	-0.00061484	4.2927	0.001824	2.8457	0.0012092	424.9143610103723	63.409	1.7871	60.665	60.004	61.791	-2.7444					105	33	5	0	0	0	0.68588	1	4787	4787		34.501	1.4615	1	695510			37846	6620	31228	31252	41226	41226					0.09092025699533224
METQWWPE	8	Unmodified	_METQWWPE_					0	0	0		ENST00000368202.4_1_6:128840173-128841710:-|nuORF	ENST00000368202.4_1_6:128840173-128841710:-|nuORF	ENST00000368202.4_1_6:128840173-128841710:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	553.7364501953125	2	553.734217	1105.45388	2.2564	0.0012494	3.2795	0.001816	5.5358	0.0030654	553.735797373348	106.09	0.79205	106.09	105.83	106.63	0					37	17	3	0	0	0	0.70469	1	11934	11934		42.396	1.8235	1	538500			37847	10865	31229	31253	41227	41227					-0.0946275559656442
METRIEFDS	9	Unmodified	_METRIEFDS_					0	0	0		tr|A0A7D6ZIV5|A0A7D6ZIV5_9CLOTAspartateammonia-lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08580PE=4SV=1	tr|A0A7D6ZIV5|A0A7D6ZIV5_9CLOTAspartateammonia-lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08580PE=4SV=1	tr|A0A7D6ZIV5|A0A7D6ZIV5_9CLOTAspartateammonia-lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08580PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.31787109375	2	564.255514	1126.49647	1.556	0.00087801	-0.10427	-5.8834E-05	1.4518	0.00081917	564.7569435653324	113.15	0.44576	111.71	111.51	111.95	-1.4461					11	8	2	0	0	0	0.027462	1	10499	10499		30.504	13.139	1	31787			37848	35626	31230	31254	41228	41228					-0.06171405258965024
METRVQTEE	9	Unmodified	_METRVQTEE_					0	0	0			REV__nc|ENSG00000139971|Q86TY3-2|ARMH4	REV__nc|ENSG00000139971|Q86TY3-2|ARMH4	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.7598876953125	2	561.75842	1121.50229	1.4349	0.00080607	-1.4596	-0.00081997	-0.024736	-1.3895E-05	561.7574849001129	64.478	1.699	61.003	60.442	62.141	-3.475					96	34	4	0	0	0	0.2422	1	4588	4588		69.628	0.8408	1	995080	+		37849	19646	31231	31255	41229	41229					-0.05360306747297727
METVPFTVE	9	Unmodified	_METVPFTVE_					0	0	0		EIF2AK3|p.S455Mfs*65|1|0.04|ENSG00000172071|chr2:88588029-88588047|TGAGAAAACTTATCATTAC/-|frameshift_variant;ENSG00000172071|ENST00000303236|EIF2AK3	EIF2AK3|p.S455Mfs*65|1|0.04|ENSG00000172071|chr2:88588029-88588047|TGAGAAAACTTATCATTAC/-|frameshift_variant	EIF2AK3|p.S455Mfs*65|1|0.04|ENSG00000172071|chr2:88588029-88588047|TGAGAAAACTTATCATTAC/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.8555908203125	2	526.752075	1051.4896	-0.10327	-5.44E-05	-0.51776	-0.00027273	-0.62104	-0.00032713	526.7507365804349	128.76	0.24773	127.3	127.2	127.45	-1.4565					5	4	2	0	0	0	0.027462	1	12305	12305		23.042	3.6825	1	3324.2			37850	788	31232	31256	41230	41230					-0.0340871813953072
MEVAYMKAE	9	Unmodified	_MEVAYMKAE_					0	0	0			REV__tr|A0A553SGI2|A0A553SGI2_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10860PE=3SV=1	REV__tr|A0A553SGI2|A0A553SGI2_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10860PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.2474975585938	2	536.246103	1070.47765	1.3989	0.00075018	0.81163	0.00043523	2.2106	0.0011854	536.2463556765667	113.9	2.2919	113.9	113.57	115.86	0					107	49	4	0	0	0	0.1944	1	13016	13016		77.318	3.3428	1	6753500	+		37851	29703	31233	31257	41231	41231					-0.05476658154384495
MEVAYMKAE	9	Unmodified	_MEVAYMKAE_					0	0	0			REV__tr|A0A553SGI2|A0A553SGI2_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10860PE=3SV=1	REV__tr|A0A553SGI2|A0A553SGI2_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10860PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	536.2454223632812	2	536.246103	1070.47765	-0.69524	-0.00037282	0.15637	8.3852E-05	-0.53888	-0.00028897	536.246148469639	113.89	3.7057	113.77	113.37	117.07	-0.11777					126	74	2	0	0	0	0.21231	2	10804	10804;10815		74.255	4.6274	1	608760	+		37852	29703	31233	31257	41232;41233	41232					-0.05476658154384495
MEVAYMKAE	9	Unmodified	_MEVAYMKAE_					0	0	0			REV__tr|A0A553SGI2|A0A553SGI2_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10860PE=3SV=1	REV__tr|A0A553SGI2|A0A553SGI2_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10860PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	536.2451782226562	2	536.246103	1070.47765	0.97643	0.00052361	-1.5969	-0.00085634	-0.62049	-0.00033273	536.2452380983605	114.48	3.218	113.43	113.05	116.27	-1.055					122	64	2	0	0	0	0.14998	3	8465	8441;8465;8471		84.916	8.0689	1	980200	+		37853	29703	31233	31257	41234;41235;41236	41235					-0.05476658154384495
MEVAYMKAE	9	Unmodified	_MEVAYMKAE_					0	0	0			REV__tr|A0A553SGI2|A0A553SGI2_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10860PE=3SV=1	REV__tr|A0A553SGI2|A0A553SGI2_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10860PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.2461547851562	2	536.246103	1070.47765	-0.42872	-0.0002299	-0.14478	-7.7637E-05	-0.5735	-0.00030753	536.2460282370151	114.83	3.7432	113.44	113.1	116.84	-1.3977					114	72	2	0	0	0	0.1804	2	10719	10719;10730		79.713	8.4169	1	971930	+		37854	29703	31233	31257	41237;41238	41237					-0.05476658154384495
MEVEENGIKM	10	Unmodified	_MEVEENGIKM_					0	0	0		nc|ENSG00000178568|Q15303-4|ERBB4;nc|ENSG00000178568|Q15303-3|ERBB4;nc|ENSG00000178568|Q15303-2|ERBB4;ENSG00000178568|ENST00000342788|ERBB4;ENST00000484594.5_1_2:212426591-213403254:-|nuORF	nc|ENSG00000178568|Q15303-4|ERBB4	nc|ENSG00000178568|Q15303-4|ERBB4	MULTI-MSMS	OvCa9_classI_Rep3	3	590.2670288085938	2	590.272849	1178.53115	-7.705	-0.0045481	0.67006	0.00039552	-7.035	-0.0041526	590.2732006658329	159.89	2.9332	158.56	157.96	160.89	-1.3316					148	58	4	0	0	0	0.62299	1	13823	13823		39.253	2.0937	1	239760			37855	7762	31234	31258	41239	41239					-0.05097905442539741
MEVGGVVHIF	10	Unmodified	_MEVGGVVHIF_					0	0	0			REV__ENSG00000230178|ENST00000456475|OR4F3	REV__ENSG00000230178|ENST00000456475|OR4F3	MULTI-MSMS	OvCa9_classI_Rep2	2	544.2841186523438	2	544.283877	1086.5532	0.59772	0.00032533	1.4365	0.00078187	2.0342	0.0011072	544.2844410605263	127.09	1.3826	126.85	126.59	127.97	-0.2359					56	27	4	0	0	0	0.62668	1	12427	12427		38.806	1.647	1	117620	+		37856	23380	31235	31259	41240	41240					0.013386870881959112
MEVLSKVLS	9	Unmodified	_MEVLSKVLS_					0	0	0			REV__tr|A0A7D6VUF2|A0A7D6VUF2_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12925PE=4SV=1	REV__tr|A0A7D6VUF2|A0A7D6VUF2_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12925PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.2833251953125	2	503.286085	1004.55762	-0.10977	-5.5244E-05	-3.6889	-0.0018566	-3.7986	-0.0019118	503.28403729511336	112.98	2.1932	111.53	110.54	112.73	-1.4461					96	43	4	0	0	0	0.22035	1	10467	10467		72.879	7.4139	1	450900	+		37857	31672	31236	31260	41241	41241					0.0555215151110815
MEVLVSSINV	10	Unmodified	_MEVLVSSINV_					0	0	0		nc|ENSG00000050628|P43115-5|PTGER3	nc|ENSG00000050628|P43115-5|PTGER3	nc|ENSG00000050628|P43115-5|PTGER3	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.7682495117188	2	545.794275	1089.574	2.0218	0.0011035	0.68696	0.00037494	2.7087	0.0014784	545.7942124298828	82.281	0.75411	82.281	81.854	82.609	0					33	13	4	0	0	0	0.026891	1	8459	8459		31.53	7.3271	1	957530			37858	14872	31237	31261	41242	41242					0.0327923267720962
MEVLVSSINV	10	Unmodified	_MEVLVSSINV_					0	0	0		nc|ENSG00000050628|P43115-5|PTGER3	nc|ENSG00000050628|P43115-5|PTGER3	nc|ENSG00000050628|P43115-5|PTGER3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	545.794275	1089.574	-1.3315	-0.00072671	-0.50395	-0.00027505	-1.8354	-0.0010018	545.7941378852149	84.528	0.9248	82.267	82.02	82.945	-2.261	0.044827	0.00018782	NaN	24.519	34	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106120			37859	14872	31237	31261							0.0327923267720962
MEVLVSSINV	10	Unmodified	_MEVLVSSINV_					0	0	0		nc|ENSG00000050628|P43115-5|PTGER3	nc|ENSG00000050628|P43115-5|PTGER3	nc|ENSG00000050628|P43115-5|PTGER3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	545.794275	1089.574	0.76374	0.00041685	-1.7142	-0.00093561	-0.95048	-0.00051877	545.793161078936	84.883	0.82381	82.237	81.931	82.755	-2.6463	0.01459	-0.0011333	NaN	24.519	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106890			37860	14872	31237	31261							0.0327923267720962
MEVTCVPTP	9	Unmodified	_MEVTCVPTP_					0	0	0		ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-2|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	ENSG00000175216|ENST00000529230|CKAP5	ENSG00000175216|ENST00000529230|CKAP5	MULTI-MSMS	OvCa99_classI_Rep5	1	488.7284851074219	2	488.727546	975.440539	0.91438	0.00044688	0.75621	0.00036958	1.6706	0.00081646	488.7277705460026	131.52	0.42328	131.52	131.29	131.72	0					15	8	2	0	0	0	0.27546	1	15282	15282		65.803	10.299	1	96958			37861	7525	31238	31262	41243	41243					-0.048163297001337924
MEVTDEIHGLL	11	Oxidation (M)	_M(Oxidation (M))EVTDEIHGLL_		M(1)EVTDEIHGLL		M(51)EVTDEIHGLL	0	0	1			REV__nc|ENSG00000115904|Q07889-2|SOS1	REV__nc|ENSG00000115904|Q07889-2|SOS1	MULTI-MSMS	OvCa99_classI_Rep5	1	636.8118286132812	2	636.810653	1271.60675	1.6013	0.0010197	0.41932	0.00026703	2.0206	0.0012867	636.8108563716003	119.31	0.51883	119.31	119.01	119.52	0					26	11	3	0	0	0	0.52842	1	13682	13682		51.193	6.1705	1	619820	+		37862	18276	31239	31263	41244	41244		421			-0.018186049905807522
MEVTEEIIK	9	Unmodified	_MEVTEEIIK_					0	0	0		tr|A0A553SLP5|A0A553SLP5_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21025PE=4SV=1	tr|A0A553SLP5|A0A553SLP5_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21025PE=4SV=1	tr|A0A553SLP5|A0A553SLP5_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21025PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	546.2858276367188	2	546.286282	1090.55801	-0.56606	-0.00030923	0.47535	0.00025968	-0.09071	-4.9554E-05	546.2863258210423	137.01	1.2304	136.78	136.4	137.63	-0.22697					54	25	3	0	0	0	0.18193	1	13628	13628		79.451	2.6769	1	145390			37863	33749	31240	31264	41245	41245					0.01635526440304602
MEVTLWKAN	9	Unmodified	_MEVTLWKAN_					0	0	0			REV__nc|ENSG00000109832|Q9UHL0-2|DDX25	REV__nc|ENSG00000109832|Q9UHL0-2|DDX25	MULTI-SECPEP	OvCa9_classI_Rep3	3	545.829833984375	2	546.281334	1090.54812	-0.7949	-0.00043424	-4.2916	-0.0023444	-5.0865	-0.0027787	546.7803299139077	97.894	1.069	96.135	95.865	96.934	-1.7595					25	20	2	0	0	0	0.027304	1	6482	6482		87.696	28.914	1	45097	+		37864	17954	31241	31265	41246	41246					0.00646383225603131
MEVTLWKAN	9	Unmodified	_MEVTLWKAN_					0	0	0			REV__nc|ENSG00000109832|Q9UHL0-2|DDX25	REV__nc|ENSG00000109832|Q9UHL0-2|DDX25	MULTI-MATCH	OvCa9_classI_Rep2	2		2	546.281334	1090.54812	0.032698	1.7862E-05	-4.3804	-0.0023929	-4.3477	-0.0023751	546.7800413577735	97.172	0.98718	96.213	95.921	96.908	-0.95857	0.061351	-0.00096667	NaN	87.696	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33132	+		37865	17954	31241	31265							0.00646383225603131
MEVTVARVN	9	Unmodified	_MEVTVARVN_					0	0	0			REV__ENST00000559070.5_1_17:78261823-78310301:+|nuORF	REV__ENST00000559070.5_1_17:78261823-78310301:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.8191223144531	2	509.771134	1017.52771	0.55838	0.00028464	-1.9648	-0.0010016	-1.4064	-0.00071694	509.7697551528577	72.394	0.40869	72.394	72.165	72.574	0					14	9	3	0	0	0	0.027455	1	7046	7046		42.396	38.986	1	146360	+		37866	27592	31242	31266	41247	41247					0.01965212565778529
MEVTWYKD	8	Unmodified	_MEVTWYKD_					0	0	0		ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.P6706Tfs*18|1|0.25|ENSG00000154358|chr1:228370088-228370089|-/GA|frameshift_variant;OBSCN|p.G3435Vfs*25|1|0.11|ENSG00000154358|chr1:228288852-228288853|-/T|frameshift_variant;OBSCN|p.E3436Rfs*24|1|0.11|ENSG00000154358|chr1:228288854-228288855|-/A|frameshift_variant	ENSG00000154358|ENST00000680850|OBSCN	ENSG00000154358|ENST00000680850|OBSCN	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.2468872070312	2	536.244418	1070.47428	-0.42872	-0.0002299	2.9982	0.0016078	2.5695	0.0013779	536.2460282370151	114.83	3.7432	113.44	113.1	116.84	-1.3977					114	72	2	0	0	0	0.62474	1	10806	10806		58.782	3.2778	1	971930			37867	5731	31243	31267	41248	41248					-0.058135849367545234
MEVVDVPVQ	9	Unmodified	_MEVVDVPVQ_					0	0	0			REV__ENSG00000106263|ENST00000360876|EIF3B	REV__ENSG00000106263|ENST00000360876|EIF3B	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.8191223144531	2	508.260068	1014.50558	0.5525	0.00028081	-3.6313	-0.0018456	-3.0788	-0.0015648	508.2580963988198	72.288	0.52403	72.288	72.086	72.61	0					28	12	3	0	0	0	0.027462	1	7046	7046		27.882	10.517	1	550350	+		37868	17785	31244	31268	41249	41249					-0.0010901190263439275
MEWGYPPVQS	10	Unmodified	_MEWGYPPVQS_					0	0	0			REV__ENSG00000169933|ENST00000675598|FRMPD4	REV__ENSG00000169933|ENST00000675598|FRMPD4	MULTI-MSMS	OvCa9_classI_Rep3	3	597.261474609375	2	597.268424	1192.5223	-5.7021	-0.0034057	-3.1328	-0.0018711	-8.8349	-0.0052768	597.2662753283457	159.85	2.2734	158.52	158.16	160.43	-1.3316					91	44	4	0	0	0	0.55359	1	13843	13843		47.657	6.8792	1	88670	+		37869	21500	31245	31269	41250	41250					-0.06626511016679615
MEWKPYWFRYY	11	Unmodified	_MEWKPYWFRYY_					0	0	0			REV__nc|ENSG00000180481|Q4G1C9-5|GLIPR1L2	REV__nc|ENSG00000180481|Q4G1C9-5|GLIPR1L2	MULTI-MSMS	OvCa99_classI_Rep5	1	556.9275512695312	3	556.927112	1667.75951	1.5925	0.00088692	-2.2817	-0.0012708	-0.68921	-0.00038384	557.2603301445655	146.59	0.73466	146.59	146.28	147.01	0					38	14	4	0	0	0	0.72573	1	17151	17151		6.001	4.4781	1	285370	+		37870	22176	31246	31270	41251	41251					-0.04766364803322176
MEWLTYLTV	9	Unmodified	_MEWLTYLTV_					0	0	0			REV__ENST00000323224.7_1_18:671383-671425:+|nuORF	REV__ENST00000323224.7_1_18:671383-671425:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	578.29052734375	2	578.291368	1154.56818	-5.4888	-0.0031741	2.5815	0.0014929	-2.9073	-0.0016812	578.2927598597663	159.22	4.1126	158.99	158.53	162.64	-0.22697					262	82	5	0	0	0	0.38529	1	16323	16323		53.351	16.192	1	1073400	+		37871	15958	31247	31271	41252	41252					-0.002918658344924552
MEWRSQLLS	9	Unmodified	_MEWRSQLLS_					0	0	0		ENSG00000134516|ENST00000520908|DOCK2;ENST00000522138.1_1_5:169064330-169108764:+|nuORF;DOCK2|p.P175Lfs*53|1|0.3|ENSG00000134516|chr5:169681795-169681795|C/-|frameshift_variant	ENSG00000134516|ENST00000520908|DOCK2	ENSG00000134516|ENST00000520908|DOCK2	MULTI-MSMS	OvCa99_classI_Rep5	1	575.7965087890625	2	575.289691	1148.56483	1.5077	0.00086736	3.2349	0.001861	4.7426	0.0027284	575.7927849309518	135.37	2.1653	135.37	134.95	137.11	0					108	45	4	0	0	0	0.44568	1	15801	15801		47.657	4.7931	1	179170			37872	4305	31248	31272	41253	41253					-0.0035111588845211372
MEWWNDLW	8	Unmodified	_MEWWNDLW_					0	0	0		ENSG00000164307|ENST00000443439|ERAP1;nc|ENSG00000164307|Q9NZ08-2|ERAP1	ENSG00000164307|ENST00000443439|ERAP1	ENSG00000164307|ENST00000443439|ERAP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.8170776367188	2	590.250034	1178.48552	0.074105	4.3741E-05	-1.4434	-0.00085197	-1.3693	-0.00080823	590.2493527176914	71.696	0.4084	71.696	71.548	71.956	0					17	9	3	0	0	0	0.028476	1	6956	6956		65.803	0	1	534770			37873	6443	31249	31273	41254	41254					-0.09658762842605029
MEYALNMLL	9	Unmodified	_MEYALNMLL_					0	0	0		ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	OvCa99_classI_Rep5	1	549.274169921875	2	549.272121	1096.52969	0.34735	0.00019079	0.10737	5.8975E-05	0.45472	0.00024977	549.2721943418378	161.2	0.45338	161.2	161.01	161.46	0					15	8	2	0	0	0	0.50149	1	18897	18897		42.396	3.59	1	71109			37874	5233	31250	31274	41255	41255					-0.014714947406218926
MEYDEASLSF	10	Oxidation (M)	_M(Oxidation (M))EYDEASLSF_		M(1)EYDEASLSF		M(57)EYDEASLSF	0	0	1			REV__ENSG00000177485|ENST00000557385|ZBTB33	REV__ENSG00000177485|ENST00000557385|ZBTB33	MULTI-MSMS	OvCa99_classI_Rep5	1	604.2483520507812	2	604.244812	1206.47507	1.2139	0.00073352	1.8252	0.0011029	3.0391	0.0018364	604.2457584788444	124.38	0.78488	124.38	124.15	124.93	0					29	16	2	0	0	0	0.48198	1	14342	14342		56.721	10.749	1	889640	+		37875	22011	31251	31275	41256	41256		511			-0.11990835078358941
MEYDEASLSF	10	Oxidation (M)	_M(Oxidation (M))EYDEASLSF_					0	0	1			REV__ENSG00000177485|ENST00000557385|ZBTB33	REV__ENSG00000177485|ENST00000557385|ZBTB33	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	604.244812	1206.47507	1.2139	0.00073352	1.8252	0.0011029	3.0391	0.0018364	604.2457584788444	124.38	0.78488	124.38	124.15	124.93	0	0	0	NaN	56.721	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	889640	+		37876	22011	31251	31275				511			-0.11990835078358941
MEYWLVIN	8	Unmodified	_MEYWLVIN_					0	0	0		ENST00000391993.7_1_2:239307657-239307816:+|nuORF	ENST00000391993.7_1_2:239307657-239307816:+|nuORF	ENST00000391993.7_1_2:239307657-239307816:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.28076171875	2	534.265153	1066.51575	2.0557	0.0010983	2.8782	0.0015377	4.9339	0.002636	534.2670996986299	85.559	0.28227	85.559	85.422	85.705	0					12	6	3	0	0	0	0.028476	1	8966	8966		31.955	5.2619	1	306720			37877	11211	31252	31276	41257	41257					-0.014844041774040306
MFAVNKLLKN	10	Unmodified	_MFAVNKLLKN_					0	0	0			REV__ENSG00000138109|ENST00000260682|CYP2C9	REV__ENSG00000138109|ENST00000260682|CYP2C9	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3419189453125	2	589.341726	1176.6689	-2.1868	-0.0012888	4.2276	0.0024915	2.0407	0.0012027	589.3441619466173	148.26	4.549	146.82	145.53	150.08	-1.435					304	95	6	0	0	0	0.76627	1	14482	14482		23.042	1.0826	1	385010	+		37878	19510	31253	31277	41258	41258					0.08763210939059718
MFCLEAIVKH	10	Unmodified	_MFCLEAIVKH_					0	0	0		ENST00000607742.5_1_6:158538757-158579378:-|nuORF;nc|ENSG00000122335|Q96JX3-2|SERAC1;ENSG00000122335|ENST00000647468|SERAC1	ENST00000607742.5_1_6:158538757-158579378:-|nuORF	ENST00000607742.5_1_6:158538757-158579378:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	595.807861328125	2	595.806662	1189.59877	-0.89762	-0.00053481	3.3622	0.0020032	2.4646	0.0014684	595.8084618869894	118.84	0.82976	117.49	117.1	117.93	-1.3444					33	15	3	0	0	0	0.67931	1	11148	11148		32.812	1.2826	1	94294			37879	3526	31254	31278	41259	41259					0.011555892789374411
MFCLEAIVKH	10	Unmodified	_MFCLEAIVKH_					0	0	0		ENST00000607742.5_1_6:158538757-158579378:-|nuORF;nc|ENSG00000122335|Q96JX3-2|SERAC1;ENSG00000122335|ENST00000647468|SERAC1	ENST00000607742.5_1_6:158538757-158579378:-|nuORF	ENST00000607742.5_1_6:158538757-158579378:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	595.806662	1189.59877	-1.8062	-0.0010762	4.3801	0.0026097	2.5739	0.0015335	595.8091337145465	117.88	1.5905	117.73	117.29	118.88	-0.14755	0.14532	0.0010774	NaN	32.812	65	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83995			37880	3526	31254	31278							0.011555892789374411
MFCLEAIVKH	10	Unmodified	_MFCLEAIVKH_					0	0	0		ENST00000607742.5_1_6:158538757-158579378:-|nuORF;nc|ENSG00000122335|Q96JX3-2|SERAC1;ENSG00000122335|ENST00000647468|SERAC1	ENST00000607742.5_1_6:158538757-158579378:-|nuORF	ENST00000607742.5_1_6:158538757-158579378:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	595.806662	1189.59877	0.61521	0.00036654	2.1458	0.0012785	2.761	0.001645	595.8076793964697	118.56	0.74377	117.53	117.24	117.98	-1.0271	-0.052917	-0.001585	NaN	32.812	36	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75657			37881	3526	31254	31278							0.011555892789374411
MFDGYMNFFV	10	Unmodified	_MFDGYMNFFV_					0	0	0			REV__tr|A0A553SIF9|A0A553SIF9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_14785PE=4SV=1	REV__tr|A0A553SIF9|A0A553SIF9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_14785PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	635.7664794921875	2	635.767203	1269.51985	3.6655	0.0023304	-4.2779	-0.0027198	-0.61248	-0.0003894	635.7643437376506	88.06	1.2095	88.06	87.794	89.004	0					70	28	3	0	0	0	0.53885	1	9365	9365		49.442	1.482	1	5128100	+		37882	29889	31255	31279	41260	41260					-0.10412682746027713
MFDPSLRSP	9	Unmodified	_MFDPSLRSP_					0	0	0			REV__ENSG00000125686|ENST00000300651|MED1	REV__ENSG00000125686|ENST00000300651|MED1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.7937622070312	2	525.257859	1048.50117	-1.1761	-0.00061775	2.8631	0.0015038	1.687	0.0008861	525.7607964812178	91.809	0.80913	89.267	88.962	89.771	-2.5425					22	15	2	0	0	0	0.027462	1	7970	7970		29.17	0.020503	1	38041	+		37883	18739	31256	31280	41261	41261					-0.021144763255506405
MFDPSLRSP	9	Unmodified	_MFDPSLRSP_					0	0	0			REV__ENSG00000125686|ENST00000300651|MED1	REV__ENSG00000125686|ENST00000300651|MED1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	525.257859	1048.50117	1.5408	0.0008093	-1.683	-0.00088401	-0.14223	-7.4709E-05	525.2571109527956	90.601	1.0161	89.299	88.978	89.994	-1.302	0.050032	-0.0041926	NaN	52.937	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20047	+		37884	18739	31256	31280							-0.021144763255506405
MFDVGKTQP	9	Unmodified	_MFDVGKTQP_					0	0	0		ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	MULTI-MSMS	OvCa99_classI_Rep5	1	511.7522277832031	2	511.75241	1021.49027	0.96374	0.0004932	-2.5593	-0.0013097	-1.5955	-0.00081651	511.7508956083582	153.8	0.87045	153.8	153.55	154.42	0					38	17	3	0	0	0	0.46377	1	18002	18002		45.952	8.9235	1	159350			37885	4102	31257	31281	41262	41262					-0.01961878699830777
MFEKTTLVLE	10	Unmodified	_MFEKTTLVLE_					0	0	0			REV__ENSG00000204560|ENST00000376442|DHX16	REV__ENSG00000204560|ENST00000376442|DHX16	MULTI-MSMS	OvCa99_classI_Rep5	1	404.21942138671875	3	404.21778	1209.63151	3.2514	0.0013143	-0.098768	-3.9924E-05	3.1526	0.0012744	404.2178648039015	90.477	4.4615	90.477	90.186	94.648	0					287	107	5	0	0	0	0.59317	1	9743	9743		42.864	3.6114	1	88373000	+		37886	23167	31258	31282	41263	41263					0.03508074882802248
MFFHSLMV	8	Unmodified	_MFFHSLMV_					0	0	0		ENST00000296464.8_1_4:128732609-128732648:+|nuORF	ENST00000296464.8_1_4:128732609-128732648:+|nuORF	ENST00000296464.8_1_4:128732609-128732648:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.82763671875	2	506.243166	1010.47178	-0.24317	-0.0001231	0.43108	0.00021823	0.18791	9.513E-05	506.2432943902204	78.512	0.28469	75.695	75.457	75.742	-2.8165					8	5	2	0	0	0	0.028476	1	6327	6327		44.531	0	1	29793			37887	10135	31259	31283	41264	41264					-0.033037118753782124
MFFVACIVGF	10	Unmodified	_MFFVACIVGF_					0	0	0			REV__OR2T6|p.A146Qfs*34|1|0.04|ENSG00000198104|chr1:248388043-248388044|GG/-|frameshift_variant	REV__OR2T6|p.A146Qfs*34|1|0.04|ENSG00000198104|chr1:248388043-248388044|GG/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	567.2809448242188	2	567.279749	1132.54494	2.2638	0.0012842	-1.9472	-0.0011046	0.3166	0.0001796	567.2787878651918	108.24	5.252	108.24	107.31	112.57	0					376	118	6	0	0	0	0.5794	1	12780	12780		44.531	0.15388	1	126230000	+		37888	22988	31260	31284	41265	41265					-0.016025831527713308
MFGEAYSIIK	10	Unmodified	_MFGEAYSIIK_					0	0	0			REV__PGD|p.Q337E|1|0.09|ENSG00000142657|chr1:10417409-10417409|C/G|missense_variant	REV__PGD|p.Q337E|1|0.09|ENSG00000142657|chr1:10417409-10417409|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	579.79248046875	2	579.796817	1157.57908	-4.3077	-0.0024976	-2.4522	-0.0014218	-6.7599	-0.0039194	579.7951709807556	145.58	0.99438	144.6	144.34	145.33	-0.97301					55	19	4	0	0	0	0.66721	1	12189	12189		34.173	1.3601	1	106300	+		37889	29289	31261	31285	41266	41266					0.006595365398197828
MFGLITAAVLI	11	Unmodified	_MFGLITAAVLI_					0	0	0			REV__tr|A0A7D6VSN3|A0A7D6VSN3_9CLOTAscorbate-specificPTSsystemEIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11330PE=3SV=1	REV__tr|A0A7D6VSN3|A0A7D6VSN3_9CLOTAscorbate-specificPTSsystemEIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11330PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	574.8411865234375	2	574.841028	1147.6675	1.078	0.00061969	2.0466	0.0011764	3.1246	0.0017961	574.8419996774021	129.5	0.69295	128.05	127.84	128.53	-1.4565					26	13	3	0	0	0	0.62497	1	12403	12403		42.396	1.618	1	59799	+		37890	31522	31262	31286	41267	41267					0.09957576850274563
MFGLITAAVLI	11	Unmodified	_MFGLITAAVLI_					0	0	0			REV__tr|A0A7D6VSN3|A0A7D6VSN3_9CLOTAscorbate-specificPTSsystemEIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11330PE=3SV=1	REV__tr|A0A7D6VSN3|A0A7D6VSN3_9CLOTAscorbate-specificPTSsystemEIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11330PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	574.841028	1147.6675	0.34533	0.00019851	2.7089	0.0015572	3.0542	0.0017557	574.842423944179	128.32	0.64297	128.09	127.88	128.53	-0.22696	0.019246	0.00020146	NaN	42.396	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37665	+		37891	31522	31262	31286							0.09957576850274563
MFGLITAAVLI	11	Unmodified	_MFGLITAAVLI_					0	0	0			REV__tr|A0A7D6VSN3|A0A7D6VSN3_9CLOTAscorbate-specificPTSsystemEIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11330PE=3SV=1	REV__tr|A0A7D6VSN3|A0A7D6VSN3_9CLOTAscorbate-specificPTSsystemEIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11330PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	574.841028	1147.6675	0.051234	2.9452E-05	3.0699	0.0017647	3.1211	0.0017941	574.8425803559817	129.19	0.74265	128.08	127.84	128.59	-1.1121	0.0073097	0.00061648	NaN	42.396	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40492	+		37892	31522	31262	31286							0.09957576850274563
MFGLITAAVLI	11	Unmodified	_MFGLITAAVLI_					0	0	0			REV__tr|A0A7D6VSN3|A0A7D6VSN3_9CLOTAscorbate-specificPTSsystemEIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11330PE=3SV=1	REV__tr|A0A7D6VSN3|A0A7D6VSN3_9CLOTAscorbate-specificPTSsystemEIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11330PE=3SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	574.841028	1147.6675	1.078	0.00061969	2.0466	0.0011764	3.1246	0.0017961	574.8419996774021	129.5	0.69295	128.05	127.84	128.53	-1.4565	-0.026556	-0.00056001	NaN	42.396	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59799	+		37893	31522	31262	31286							0.09957576850274563
MFHKLLGF	8	Unmodified	_MFHKLLGF_					0	0	0		tr|A0A7D6VYH2|A0A7D6VYH2_9CLOTFlagellarbiosyntheticproteinFliQOS=ClostridiumintestinaleOX=36845GN=fliQPE=3SV=1	tr|A0A7D6VYH2|A0A7D6VYH2_9CLOTFlagellarbiosyntheticproteinFliQOS=ClostridiumintestinaleOX=36845GN=fliQPE=3SV=1	tr|A0A7D6VYH2|A0A7D6VYH2_9CLOTFlagellarbiosyntheticproteinFliQOS=ClostridiumintestinaleOX=36845GN=fliQPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.2491760253906	2	496.772948	991.531344	1.4546	0.0007226	2.6153	0.0012992	4.0699	0.0020218	496.77413883822754	127.27	0.85321	127.27	127.05	127.9	0					33	18	3	0	0	0	0.028476	1	14755	14755		74.517	23.181	1	419330			37894	35331	31263	31287	41268	41268					0.035239271303225905
MFIICPQHD	9	Unmodified	_MFIICPQHD_					0	0	0			REV__ENST00000458604.6_1_14:53184994-53185111:+|nuORF	REV__ENST00000458604.6_1_14:53184994-53185111:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.3033447265625	2	552.254262	1102.49397	-1.0438	-0.00057642	-2.6448	-0.0014606	-3.6885	-0.002037	552.2528256595838	45.236	1.3542	42.197	41.816	43.17	-3.0385					32	25	2	0	0	0	0.027462	1	2367	2367		30.504	1.3541	1	14542	+		37895	17426	31264	31288	41269	41269					-0.05317532197614128
MFINIKSILW	10	Unmodified	_MFINIKSILW_					0	0	0		VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant;nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;VCAN|p.Q2143Kfs*20|1|0.07|ENSG00000038427|chr5:83539428-83539429|-/AAAAAGAAGAA|frameshift_variant;VCAN|p.G2239Afs*2|1|0.05|ENSG00000038427|chr5:83539715-83539715|A/-|frameshift_variant;nc|ENSG00000038427|P13611-3|VCAN;VCAN|p.G775Vfs*21|1|0.12|ENSG00000038427|chr5:83520629-83520630|-/TTGAT|frameshift_variant;nc|ENSG00000038427|P13611-4|VCAN	VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant	VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	632.8609008789062	2	632.859752	1263.70495	1.1764	0.0007445	1.0457	0.00066179	2.2221	0.0014063	632.860172949078	152.68	2.8165	152.68	152.36	155.17	0					141	60	4	0	0	0	0.20836	2	17904	17904;17929		93.143	21.848	1	1196100			37896	1099	31265	31289	41270;41271	41270					0.08364668115927998
MFLCAVIRAL	10	Unmodified	_MFLCAVIRAL_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.8587036132812	2	568.819573	1135.62459	1.085	0.00061719	3.6132	0.0020552	4.6982	0.0026724	568.8217011547506	131.58	0.69926	131.58	131.34	132.04	0					29	14	4	0	0	0	0.026665	1	15318	15318		51.335	0	1	350580			37897	1687	31266	31290	41272	41272					0.06220483521224196
MFLCIQEFSQ	10	Unmodified	_MFLCIQEFSQ_					0	0	0			REV__ENST00000374794.7_2_10:34759149-34806035:-|nuORF	REV__ENST00000374794.7_2_10:34759149-34806035:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	623.2844848632812	2	623.28576	1244.55697	0.39411	0.00024564	-0.39436	-0.0002458	-0.0002489	-1.5514E-07	623.2848261628737	141	0.85553	141	140.68	141.54	0					54	16	5	0	0	0	0.50999	1	16463	16463		52.937	3.4007	1	275190	+		37898	25068	31267	31291	41273	41273					-0.055530112002315946
MFLPAIPL	8	Unmodified	_MFLPAIPL_					0	0	0			REV__ENST00000485398.1_1_2:72742640-72742775:-|nuORF	REV__ENST00000485398.1_1_2:72742640-72742775:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	451.26715087890625	2	451.264425	900.514297	-0.25133	-0.00011342	4.1755	0.0018843	3.9242	0.0017708	451.26616946408643	88.666	1.1235	86.535	86.265	87.388	-2.1309					67	22	4	0	0	0	0.58426	1	5414	5414		67.327	0	1	605850	+		37899	26563	31268	31292	41274	41274					0.060060065245011174
MFNNGKSVLY	10	Unmodified	_MFNNGKSVLY_					0	0	0		tr|A0A7D6VXZ5|A0A7D6VXZ5_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10720PE=3SV=1	tr|A0A7D6VXZ5|A0A7D6VXZ5_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10720PE=3SV=1	tr|A0A7D6VXZ5|A0A7D6VXZ5_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10720PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	586.7898559570312	2	586.792066	1171.56958	1.9927	0.0011693	-2.9469	-0.0017292	-0.9542	-0.00055992	586.7905745120022	95.313	0.79453	95.313	94.905	95.699	0					38	18	4	0	0	0	0.48398	1	10406	10406		56.434	0	1	1117200			37900	35309	31269	31293	41275	41275					-0.009342317456685123
MFNNGKSVLY	10	Unmodified	_MFNNGKSVLY_					0	0	0		tr|A0A7D6VXZ5|A0A7D6VXZ5_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10720PE=3SV=1	tr|A0A7D6VXZ5|A0A7D6VXZ5_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10720PE=3SV=1	tr|A0A7D6VXZ5|A0A7D6VXZ5_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10720PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	586.792066	1171.56958	-2.1123	-0.0012395	-3.8303	-0.0022476	-5.9426	-0.0034871	586.7890399338788	97.251	0.30916	95.491	95.362	95.672	-1.7595	0.089222	-0.00074508	NaN	56.434	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10535			37901	35309	31269	31293							-0.009342317456685123
MFPCRFIKI	9	Oxidation (M)	_M(Oxidation (M))FPCRFIKI_		M(1)FPCRFIKI		M(91)FPCRFIKI	0	0	1		ENST00000494785.5_1_7:131012658-131163543:+|nuORF;ENSG00000128585|ENST00000352689|MKLN1	ENST00000494785.5_1_7:131012658-131163543:+|nuORF	ENST00000494785.5_1_7:131012658-131163543:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	585.8139038085938	2	585.811748	1169.60894	0.73185	0.00042873	3.1206	0.0018281	3.8525	0.0022568	585.8136759324592	131.89	2.4742	131.89	131.15	133.63	0					227	52	6	0	0	0	0.12365	1	15262	15262		90.777	18.899	1	37991000			37902	3888	31270	31294	41276	41276		118			0.030921970041617897
MFPDRQAAR	9	Unmodified	_MFPDRQAAR_					0	0	0			REV__ENST00000475711.5_1_3:138067736-138091710:+|nuORF	REV__ENST00000475711.5_1_3:138067736-138091710:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	545.7971801757812	2	546.274375	1090.5342	-0.9908	-0.00054125	-2.9018	-0.0015852	-3.8926	-0.0021264	546.2725609116568	87.965	1.2121	85.834	85.442	86.654	-2.1309					45	23	4	0	0	0	0.027462	1	5394	5394		34.173	12.213	1	43615	+		37903	26356	31271	31295	41277	41277					-0.007448494828622643
MFPGQMAGGE	10	Unmodified	_MFPGQMAGGE_					0	0	0		nc|ENSG00000186174|Q86UU0-3|BCL9L;nc|ENSG00000186174|Q86UU0-4|BCL9L;nc|ENSG00000186174|Q86UU0-2|BCL9L;ENSG00000186174|ENST00000683865|BCL9L	nc|ENSG00000186174|Q86UU0-3|BCL9L	nc|ENSG00000186174|Q86UU0-3|BCL9L	MULTI-MSMS	OvCa9_classI_Rep2	2	512.71533203125	2	512.71497	1023.41539	1.0007	0.00051305	-0.84116	-0.00043127	0.1595	8.1778E-05	512.7145226548319	129.73	1.3341	129.51	129.17	130.5	-0.22697					45	26	2	0	0	0	0.70152	1	12727	12727		30.318	4.8675	1	42470			37904	8320	31272	31296	41278	41278					-0.09538384502707231
MFPHDPAEA	9	Unmodified	_MFPHDPAEA_					0	0	0		ENSG00000175175|ENST00000308249|PPM1E;nc|ENSG00000175175|Q8WY54-3|PPM1E	ENSG00000175175|ENST00000308249|PPM1E	ENSG00000175175|ENST00000308249|PPM1E	MULTI-MSMS	OvCa99_classI_Rep5	1	507.7217102050781	2	507.72111	1013.42767	1.8251	0.00092662	-4.4341	-0.0022513	-2.6091	-0.0013247	507.71863778299905	112.65	0.53757	112.65	112.39	112.92	0					17	11	2	0	0	0	0.46377	1	12824	12824		45.952	1.8352	1	153980			37905	7522	31273	31297	41279	41279					-0.07851024768035586
MFPNFNLVV	9	Unmodified	_MFPNFNLVV_					0	0	0			REV__CPT2|p.F370Lfs*50|1|0.12|ENSG00000157184|chr1:53210781-53210781|C/-|frameshift_variant	REV__CPT2|p.F370Lfs*50|1|0.12|ENSG00000157184|chr1:53210781-53210781|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.7843017578125	2	540.78097	1079.54739	-0.31435	-0.00017	2.6112	0.0014121	2.2969	0.0012421	540.7822546541776	96.431	1.81	94.005	93.105	94.915	-2.4256					89	35	6	0	0	0	0.46377	1	8511	8511		45.952	1.5748	1	309830	+		37906	16236	31274	31298	41280	41280					0.010795885765446656
MFPSFVTLFC	10	Unmodified	_MFPSFVTLFC_					0	0	0			REV__ENSG00000197563|ENST00000640252|PIGN	REV__ENSG00000197563|ENST00000640252|PIGN	MULTI-MSMS	OvCa99_classI_Rep5	1	596.2835693359375	2	596.282489	1190.55042	2.7225	0.0016234	-2.3627	-0.0014088	0.3598	0.00021454	596.2808045947738	94.38	1.0692	94.38	93.964	95.033	0					37	24	2	0	0	0	0.49049	1	10268	10268		55.504	4.1688	1	1234600	+		37907	22935	31275	31299	41281	41281					-0.03722904360938628
MFPSFVTLFC	10	Unmodified	_MFPSFVTLFC_					0	0	0			REV__ENSG00000197563|ENST00000640252|PIGN	REV__ENSG00000197563|ENST00000640252|PIGN	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	596.282489	1190.55042	2.7225	0.0016234	-2.3627	-0.0014088	0.3598	0.00021454	596.2808045947738	94.38	1.0692	94.38	93.964	95.033	0	0	0	NaN	55.504	37	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1234600	+		37908	22935	31275	31299							-0.03722904360938628
MFPVIPLLP	9	Unmodified	_MFPVIPLLP_					0	0	0		MADD|p.F796Lfs*31|1|0.11|ENSG00000110514|chr11:47285167-47285168|-/TCTGTCGCCCAGGCTAGAGCGC|frameshift_variant;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD	MADD|p.F796Lfs*31|1|0.11|ENSG00000110514|chr11:47285167-47285168|-/TCTGTCGCCCAGGCTAGAGCGC|frameshift_variant	MADD|p.F796Lfs*31|1|0.11|ENSG00000110514|chr11:47285167-47285168|-/TCTGTCGCCCAGGCTAGAGCGC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	513.8084716796875	2	513.806457	1025.59836	0.22074	0.00011342	3.166	0.0016267	3.3867	0.0017401	513.8078754381862	110.61	1.3823	110.45	110.02	111.4	-0.16467					74	27	4	0	0	0	0.53728	1	10417	10417		39.021	4.849	1	196500			37909	2781	31276	31300	41282	41282					0.08658537621408868
MFQLLIPL	8	Unmodified	_MFQLLIPL_					0	0	0		nc|ENSG00000253649|A0A1B0GVH4|PRSS51;ENSG00000253649|ENST00000647727|PRSS51	nc|ENSG00000253649|A0A1B0GVH4|PRSS51	nc|ENSG00000253649|A0A1B0GVH4|PRSS51	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.7911376953125	2	487.790807	973.56706	-4.2794	-0.0020875	-0.88268	-0.00043056	-5.1621	-0.002518	487.79251111833076	154.83	2.3732	153.37	151.85	154.22	-1.4601					80	63	2	0	0	0	0.73626	1	15324	15324		33.516	3.674	1	62256			37910	9435	31277	31301	41283	41283					0.07921964587308139
MFRFFIRRMVK	11	Unmodified	_MFRFFIRRMVK_					0	0	0		nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B;CACNA1B|p.Y1583Tfs*63|1|0.07|ENSG00000148408|chr9:138073559-138073559|C/-|frameshift_variant	nc|ENSG00000148408|Q00975-2|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	MULTI-MSMS	OvCa9_classI_Rep2	2	510.9534912109375	3	510.95646	1529.84755	-0.81741	-0.00041766	-3.2432	-0.0016571	-4.0606	-0.0020748	510.9548519015184	48.416	2.2317	45.656	44.835	47.067	-2.7603					140	44	5	0	0	0	0.72511	1	3035	3035		14.086	3.9821	1	1255300			37911	5410	31278	31302	41284	41284					0.10381977306292356
MFVLYNSKI	9	Unmodified	_MFVLYNSKI_					0	0	0			REV__nc|ENSG00000118200|Q08AD1-2|CAMSAP2	REV__nc|ENSG00000118200|Q08AD1-2|CAMSAP2	MULTI-MSMS	OvCa9_classI_Rep2	2	557.802978515625	2	557.801903	1113.58925	1.1213	0.00062546	1.8328	0.0010223	2.9541	0.0016478	557.8028698563445	66.334	1.3892	63.638	63.22	64.609	-2.6958					82	27	4	0	0	0	0.14739	3	5142	5136;5142;5149		85.359	23.252	1	554830	+		37912	18384	31279	31303	41285;41286;41287	41286					0.03700144265076233
MFVLYNSKI	9	Unmodified	_MFVLYNSKI_					0	0	0			REV__nc|ENSG00000118200|Q08AD1-2|CAMSAP2	REV__nc|ENSG00000118200|Q08AD1-2|CAMSAP2	MULTI-MATCH	OvCa99_classI_Rep5	1		2	557.801903	1113.58925	0.96758	0.00053972	-4.3103	-0.0024043	-3.3428	-0.0018646	558.3032296988829	63.394	0.20055	63.394	63.296	63.496	0	-0.12199	-0.0062449	NaN	85.359	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115930	+		37913	18384	31279	31303							0.03700144265076233
MFVLYNSKI	9	Unmodified	_MFVLYNSKI_					0	0	0			REV__nc|ENSG00000118200|Q08AD1-2|CAMSAP2	REV__nc|ENSG00000118200|Q08AD1-2|CAMSAP2	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	557.801903	1113.58925	1.1213	0.00062546	1.8328	0.0010223	2.9541	0.0016478	557.8028698563445	66.334	1.3892	63.638	63.22	64.609	-2.6958	0.12199	0.00060841	NaN	85.359	82	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	554830	+		37914	18384	31279	31303							0.03700144265076233
MFVVPIVCV	9	Carbamidomethyl (C),Oxidation (M)	_M(Oxidation (M))FVVPIVC(Carbamidomethyl (C))V_	MFVVPIVC(1)V	M(1)FVVPIVCV	MFVVPIVC(49)V	M(49)FVVPIVCV	0	1	1		tr|A0A7D6VQX2|A0A7D6VQX2_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00115PE=4SV=1	tr|A0A7D6VQX2|A0A7D6VQX2_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00115PE=4SV=1	tr|A0A7D6VQX2|A0A7D6VQX2_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00115PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	540.2841186523438	2	540.285031	1078.55551	0.71701	0.00038739	-2.0101	-0.001086	-1.2931	-0.00069863	540.2838474213934	90.927	1.6026	89.692	89.143	90.746	-1.2355					68	30	3	0	0	0	0.42921	1	8040	8040		49.211	7.7842	1	527920			37915	34875	31280	31304	41288	41288	386	767			0.019373995016621848
MFWRFWKRRHL	11	Unmodified	_MFWRFWKRRHL_					0	0	0		tr|A0A553SPW4|A0A553SPW4_NIACIPBP1Afamilypenicillin-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_11825PE=4SV=1	tr|A0A553SPW4|A0A553SPW4_NIACIPBP1Afamilypenicillin-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_11825PE=4SV=1	tr|A0A553SPW4|A0A553SPW4_NIACIPBP1Afamilypenicillin-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_11825PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.3319091796875	3	554.969868	1661.88777	-0.67311	-0.00037356	-1.2048	-0.00066862	-1.8779	-0.0010422	555.3044148658781	55.328	0.15308	52.034	51.957	52.11	-3.2944					4	2	2	0	0	0	0.02653	1	3478	3478		6.3209	4.9021	1	9641.4			37916	34095	31281	31305	41289	41289					0.08330660021078984
MFYESVFS	8	Unmodified	_MFYESVFS_					0	0	0		tr|A0A553SF60|A0A553SF60_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08285PE=4SV=1	tr|A0A553SF60|A0A553SF60_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08285PE=4SV=1	tr|A0A553SF60|A0A553SF60_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08285PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.2781677246094	2	505.220411	1008.42627	2.0762	0.001049	-2.6873	-0.0013577	-0.61106	-0.00030872	505.21946671565416	87.053	0.2021	87.053	86.972	87.174	0					7	4	2	0	0	0	0.028476	1	9214	9214		50.025	5.4935	1	111760			37917	32994	31282	31306	41290	41290					-0.07760658856773262
MGDRHCRKKKR	11	Unmodified	_MGDRHCRKKKR_					0	0	0			REV__ENST00000510534.1_1_4:107845666-107956748:-|nuORF	REV__ENST00000510534.1_1_4:107845666-107956748:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	472.2591552734375	3	472.259201	1413.75577	-0.51557	-0.00024348	-0.26569	-0.00012547	-0.78125	-0.00036895	472.2590201448566	25.511	0.3512	25.511	25.342	25.693	0					16	6	3	0	0	0	0.57194	1	583	583		47.228	2.2055	1	81656	+		37918	20409	31283	31307	41291	41291					0.06544686941811051
MGHSQDLV	8	Unmodified	_MGHSQDLV_					0	0	0		HECW1|p.I90M|1|0.49|ENSG00000002746|chr7:43312005-43312005|C/G|missense_variant	HECW1|p.I90M|1|0.49|ENSG00000002746|chr7:43312005-43312005|C/G|missense_variant	HECW1|p.I90M|1|0.49|ENSG00000002746|chr7:43312005-43312005|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	443.708984375	2	443.708002	885.401452	-0.83129	-0.00036885	1.7971	0.0007974	0.96584	0.00042855	443.7087028952305	93.614	1.267	91.653	91.328	92.595	-1.9617					45	24	2	0	0	0	0.7043	1	6000	6000		42.474	3.6683	1	406370			37919	14393	31284	31308	41292	41292					-0.04583293939504074
MGIDSTILIE	10	Unmodified	_MGIDSTILIE_					0	0	0			REV__tr|A0A7D7A6J7|A0A7D7A6J7_9CLOTSignalrecognitionparticlereceptorFtsYOS=ClostridiumintestinaleOX=36845GN=ftsYPE=3SV=1	REV__tr|A0A7D7A6J7|A0A7D7A6J7_9CLOTSignalrecognitionparticlereceptorFtsYOS=ClostridiumintestinaleOX=36845GN=ftsYPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	546.285888671875	2	546.286282	1090.55801	-0.56606	-0.00030923	0.47535	0.00025968	-0.09071	-4.9554E-05	546.2863258210423	137.01	1.2304	136.78	136.4	137.63	-0.22697					54	25	3	0	0	0	0.42962	1	13648	13648		64.207	10.856	1	145390	+		37920	32660	31285	31309	41293	41293					0.01635526440304602
MGIDSTILIE	10	Unmodified	_MGIDSTILIE_					0	0	0			REV__tr|A0A7D7A6J7|A0A7D7A6J7_9CLOTSignalrecognitionparticlereceptorFtsYOS=ClostridiumintestinaleOX=36845GN=ftsYPE=3SV=1	REV__tr|A0A7D7A6J7|A0A7D7A6J7_9CLOTSignalrecognitionparticlereceptorFtsYOS=ClostridiumintestinaleOX=36845GN=ftsYPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	546.286865234375	2	546.286282	1090.55801	-1.7842	-0.00097466	1.4803	0.00080868	-0.30384	-0.00016598	546.2868719902328	137.72	1.1662	136.63	136.24	137.41	-1.0858					55	23	3	0	0	0	0.50656	1	11263	11263		53.351	7.3995	1	134560	+		37921	32660	31285	31309	41294	41294					0.01635526440304602
MGIDSTILIE	10	Unmodified	_MGIDSTILIE_					0	0	0			REV__tr|A0A7D7A6J7|A0A7D7A6J7_9CLOTSignalrecognitionparticlereceptorFtsYOS=ClostridiumintestinaleOX=36845GN=ftsYPE=3SV=1	REV__tr|A0A7D7A6J7|A0A7D7A6J7_9CLOTSignalrecognitionparticlereceptorFtsYOS=ClostridiumintestinaleOX=36845GN=ftsYPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.2870483398438	2	546.286282	1090.55801	1.3848	0.00075652	-1.6997	-0.00092854	-0.31489	-0.00017202	546.2851800228589	138.1	1.1958	136.57	136.29	137.49	-1.5284					49	26	2	0	0	0	0.53885	1	13456	13456		49.442	0	1	170140	+		37922	32660	31285	31309	41295	41295					0.01635526440304602
MGIFAAFRKKK	11	Unmodified	_MGIFAAFRKKK_					0	0	0		nc|ENSG00000164465|Q8N8Z6-2|DCBLD1;ENSG00000164465|ENST00000338728|DCBLD1	nc|ENSG00000164465|Q8N8Z6-2|DCBLD1	nc|ENSG00000164465|Q8N8Z6-2|DCBLD1	MULTI-MSMS	OvCa9_classI_Rep3	3	432.92626953125	3	432.925154	1295.75363	1.6734	0.00072447	1.2729	0.00055109	2.9464	0.0012756	432.9256048538329	64.918	2.5849	61.925	61.446	64.031	-2.9933					130	50	4	0	0	0	0.71582	1	2556	2556		24.232	1.6702	1	231790			37923	6460	31286	31310	41296	41296					0.11758581475646679
MGKGIAVIP	9	Unmodified	_MGKGIAVIP_					0	0	0		tr|A0A553SUA2|A0A553SUA2_NIACIPTSbeta-glucosidetransportersubunitIIABCOS=NialliacirculansOX=1397GN=CEQ21_06570PE=4SV=1	tr|A0A553SUA2|A0A553SUA2_NIACIPTSbeta-glucosidetransportersubunitIIABCOS=NialliacirculansOX=1397GN=CEQ21_06570PE=4SV=1	tr|A0A553SUA2|A0A553SUA2_NIACIPTSbeta-glucosidetransportersubunitIIABCOS=NialliacirculansOX=1397GN=CEQ21_06570PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	442.6018371582031	2	443.264956	884.515359	0.62343	0.00027634	3.3843	0.0015002	4.0078	0.0017765	443.26630993826285	49.743	1.2891	46.982	46.572	47.861	-2.7603					49	25	3	0	0	0	0.027462	1	3222	3222		26.796	0	1	205900			37924	34589	31287	31311	41297	41297					0.0684822089338013
MGKGIAVIP	9	Unmodified	_MGKGIAVIP_					0	0	0		tr|A0A553SUA2|A0A553SUA2_NIACIPTSbeta-glucosidetransportersubunitIIABCOS=NialliacirculansOX=1397GN=CEQ21_06570PE=4SV=1	tr|A0A553SUA2|A0A553SUA2_NIACIPTSbeta-glucosidetransportersubunitIIABCOS=NialliacirculansOX=1397GN=CEQ21_06570PE=4SV=1	tr|A0A553SUA2|A0A553SUA2_NIACIPTSbeta-glucosidetransportersubunitIIABCOS=NialliacirculansOX=1397GN=CEQ21_06570PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	443.264956	884.515359	0.93938	0.00041639	1.5049	0.00066708	2.4443	0.0010835	443.2651286861775	46.961	0.17802	46.961	46.852	47.03	0	0.01459	-0.0034152	NaN	26.796	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34282			37925	34589	31287	31311							0.0684822089338013
MGKHVATLEG	10	Unmodified	_MGKHVATLEG_					0	0	0			REV__ENSG00000174306|ENST00000683867|ZHX3	REV__ENSG00000174306|ENST00000683867|ZHX3	MULTI-MSMS	OvCa99_classI_Rep5	1	521.77294921875	2	521.771134	1041.52771	-1.4135	-0.00073754	4.3177	0.0022529	2.9042	0.0015153	521.7734200465217	27.117	0.84912	27.117	26.942	27.791	0					37	16	4	0	0	0	0.58282	1	793	793		44.117	5.3107	1	1980500	+		37926	21824	31288	31312	41298	41298					0.008612125657919023
MGKLAQYF	8	Unmodified	_MGKLAQYF_					0	0	0			REV__ENSG00000177409|ENST00000318238|SAMD9L	REV__ENSG00000177409|ENST00000318238|SAMD9L	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.805419921875	2	479.246763	956.478974	-1.2251	-0.00058715	-2.912	-0.0013956	-4.1371	-0.0019827	479.2453080575972	55.176	1.0943	52.362	52.022	53.116	-2.8139					35	21	2	0	0	0	0.028476	1	3892	3892		25.45	0	1	52573	+		37927	22004	31289	31313	41299	41299					-0.0010065600331472524
MGPQLSGKLLM	11	Unmodified	_MGPQLSGKLLM_					0	0	0			REV__nc|ENSG00000139144|O75747-2|PIK3C2G	REV__nc|ENSG00000139144|O75747-2|PIK3C2G	MULTI-MSMS	OvCa99_classI_Rep5	1	587.8194580078125	2	587.81977	1173.62499	1.6827	0.00098912	-1.3549	-0.00079642	0.32781	0.0001927	587.818733522709	135.89	0.93814	135.89	135.55	136.49	0					52	19	5	0	0	0	0.50761	1	15824	15824		53.089	7.137	1	963750	+		37928	19590	31290	31314	41300	41300					0.04511858450428008
MGQGRWPR	8	Unmodified	_MGQGRWPR_					0	0	0			REV__ENST00000481424.5_1_7:99217223-99217685:+|nuORF	REV__ENST00000481424.5_1_7:99217223-99217685:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2911071777344	2	494.250703	986.486853	-1.1302	-0.0005586	-3.9192	-0.0019371	-5.0494	-0.0024957	494.2484259503648	64.207	0.89603	64.207	63.814	64.71	0					37	21	2	0	0	0	0.028476	1	5812	5812		35.201	9.6267	1	1356800	+		37929	26477	31291	31315	41301	41301					-0.006930839631877461
MGRILALPS	9	Unmodified	_MGRILALPS_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000032840	REV__CON__ENSEMBL:ENSBTAP00000032840	MULTI-MSMS	OvCa9_classI_Rep2	2	479.27880859375	2	479.281137	956.547722	-0.31076	-0.00014894	-3.1843	-0.0015262	-3.4951	-0.0016751	479.2797349881233	95.486	3.0134	94.457	93.134	96.147	-1.0281					131	60	4	0	0	0	0.35444	1	8634	8634		56.721	5.3856	1	2203400	+	+	37930	16175	31292	31316	41302	41302					0.06771008296379932
MGRKNLLIF	9	Unmodified	_MGRKNLLIF_					0	0	0		ENSG00000187764|ENST00000422704|SEMA4D	ENSG00000187764|ENST00000422704|SEMA4D	ENSG00000187764|ENST00000422704|SEMA4D	MULTI-MSMS	OvCa9_classI_Rep3	3	546.3201904296875	2	546.323337	1090.63212	-2.5941	-0.0014172	-1.8322	-0.001001	-4.4263	-0.0024182	546.3218690878751	140.9	1.3767	139.86	139.33	140.71	-1.0339					60	27	3	0	0	0	0.27546	1	11619	11619		65.803	21.686	1	135350			37931	8431	31293	31317	41303	41303					0.09042959113139659
MGSFEPSPY	9	Unmodified	_MGSFEPSPY_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.786865234375	2	507.715493	1013.41643	2.1056	0.001069	-1.9043	-0.00096683	0.20132	0.00010221	507.71456960086357	118.06	0.32294	118.06	117.93	118.25	0					9	6	2	0	0	0	0.027462	1	13528	13528		18.324	0	1	38889			37932	2561	31294	31318	41304	41304					-0.08973846862170376
MGSIGFIGF	9	Unmodified	_MGSIGFIGF_					0	0	0			REV__tr|A0A7D6VQQ1|A0A7D6VQQ1_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_15880PE=4SV=1	REV__tr|A0A7D6VQQ1|A0A7D6VQQ1_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_15880PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.773681640625	2	464.733489	927.452425	-0.66891	-0.00031087	-3.1158	-0.001448	-3.7847	-0.0017589	464.73171161563033	53.483	0.47812	53.483	53.172	53.651	0					16	10	2	0	0	0	0.027415	1	4222	4222		42.474	0	1	183460	+		37933	31345	31295	31319	41305	41305					-0.014203448946545905
MGTRTQKNN	9	Unmodified	_MGTRTQKNN_					0	0	0		nc|ENSG00000185404|Q9H930-1|SP140L;nc|ENSG00000185404|Q9H930-2|SP140L;ENSG00000185404|ENST00000415673|SP140L	nc|ENSG00000185404|Q9H930-1|SP140L	nc|ENSG00000185404|Q9H930-1|SP140L	MULTI-MSMS	OvCa99_classI_Rep5	1	525.26318359375	2	525.261465	1048.50838	1.6724	0.00087845	-0.24377	-0.00012804	1.4286	0.00075041	525.26118166203	136.55	0.90443	136.55	136.21	137.11	0					46	18	4	0	0	0	0.60342	1	15951	15951		31.53	0	1	775960			37934	8252	31296	31320	41306	41306					-0.013937437251115625
MGVAIMMPVE	10	Unmodified	_MGVAIMMPVE_					0	0	0			REV__tr|A0A553SPT0|A0A553SPT0_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_26785PE=3SV=1	REV__tr|A0A553SPT0|A0A553SPT0_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_26785PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.2568359375	2	539.260699	1076.50684	-0.65351	-0.00035241	0.59196	0.00031922	-0.061547	-3.319E-05	539.2608834911649	57.254	0.76513	53.909	53.679	54.444	-3.3449					22	14	2	0	0	0	0.027117	1	3682	3682		23.042	8.1776	1	33652	+		37935	30565	31297	31321	41307	41307					-0.028348371297397534
MHDPFPMR	8	Unmodified	_MHDPFPMR_					0	0	0		PCK1|p.A481P|1|0.28|ENSG00000124253|chr20:57565376-57565376|G/C|missense_variant	PCK1|p.A481P|1|0.28|ENSG00000124253|chr20:57565376-57565376|G/C|missense_variant	PCK1|p.A481P|1|0.28|ENSG00000124253|chr20:57565376-57565376|G/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7941284179688	2	515.733497	1029.45244	-0.85875	-0.00044289	4.0725	0.0021003	3.2138	0.0016574	515.7354700591894	52.882	1.3612	49.674	49.349	50.71	-3.208					59	26	3	0	0	0	0.028476	1	3245	3245		28.254	0	1	284980			37936	15484	31298	31322	41308	41308					-0.06110668166297728
MHDPFPMR	8	Unmodified	_MHDPFPMR_					0	0	0		PCK1|p.A481P|1|0.28|ENSG00000124253|chr20:57565376-57565376|G/C|missense_variant	PCK1|p.A481P|1|0.28|ENSG00000124253|chr20:57565376-57565376|G/C|missense_variant	PCK1|p.A481P|1|0.28|ENSG00000124253|chr20:57565376-57565376|G/C|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.733497	1029.45244	-1.0316	-0.00053202	3.893	0.0020077	2.8614	0.0014757	515.7353746351441	52.837	0.78941	50.023	49.739	50.529	-2.8139	0.17477	-0.00012431	NaN	25.45	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44839			37937	15484	31298	31322							-0.06110668166297728
MHHKLLFA	8	Unmodified	_MHHKLLFA_					0	0	0		ENST00000548220.1_1_12:71054984-71148538:-|nuORF	ENST00000548220.1_1_12:71054984-71148538:-|nuORF	ENST00000548220.1_1_12:71054984-71148538:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.78778076171875	2	498.776022	995.537492	-1.1698	-0.00058346	3.2909	0.0016414	2.1211	0.0010579	498.7775133291088	45.784	0.88957	42.745	42.491	43.38	-3.0385					46	16	4	0	0	0	0.028476	1	2349	2349		35.201	9.7505	1	243040			37938	13558	31299	31323	41309	41309					0.039544453618191255
MHHYLEDT	8	Unmodified	_MHHYLEDT_					0	0	0			REV__nc|ENSG00000130023|Q5T6L9-4|ERMARD	REV__nc|ENSG00000130023|Q5T6L9-4|ERMARD	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.3053588867188	2	523.224017	1044.43348	0.63206	0.00033071	-2.9714	-0.0015547	-2.3393	-0.001224	523.2206739590016	140.09	0.29373	138.59	138.41	138.71	-1.4952					7	5	2	0	0	0	0.028476	1	13645	13645		20.482	7.5226	1	9239.6	+		37939	18915	31300	31324	41310	41310					-0.08695926256359598
MHIGHLLPFLT	11	Unmodified	_MHIGHLLPFLT_					0	0	0		tr|A0A553SJU5|A0A553SJU5_NIACITyrosine--tRNAligaseOS=NialliacirculansOX=1397GN=tyrSPE=3SV=1	tr|A0A553SJU5|A0A553SJU5_NIACITyrosine--tRNAligaseOS=NialliacirculansOX=1397GN=tyrSPE=3SV=1	tr|A0A553SJU5|A0A553SJU5_NIACITyrosine--tRNAligaseOS=NialliacirculansOX=1397GN=tyrSPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	640.307861328125	2	639.855001	1277.69545	2.0898	0.0013372	-3.9707	-0.0025407	-1.8809	-0.0012035	640.3524924479364	129.35	0.23572	129.35	129.17	129.4	0					5	4	2	0	0	0	0.025792	1	14977	14977		15.642	0	1	42568			37940	33543	31301	31325	41311	41311					0.06770899830394228
MHIIIILSVIM	11	Unmodified	_MHIIIILSVIM_					0	0	0		tr|A0A7D6ZZF1|A0A7D6ZZF1_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05805PE=3SV=1	tr|A0A7D6ZZF1|A0A7D6ZZF1_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05805PE=3SV=1	tr|A0A7D6ZZF1|A0A7D6ZZF1_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05805PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8824462890625	2	641.884912	1281.75527	-4.6434	-0.0029805	1.0177	0.00065327	-3.6257	-0.0023273	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.72244	1	15540	15540		21.96	1.013	1	543390			37941	35959	31302	31326	41312	41312					0.1256645444939295
MHIIIILSVIM	11	Unmodified	_MHIIIILSVIM_					0	0	0		tr|A0A7D6ZZF1|A0A7D6ZZF1_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05805PE=3SV=1	tr|A0A7D6ZZF1|A0A7D6ZZF1_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05805PE=3SV=1	tr|A0A7D6ZZF1|A0A7D6ZZF1_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05805PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	641.882080078125	2	641.884912	1281.75527	-5.3554	-0.0034376	1.7194	0.0011037	-3.636	-0.0023339	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.72459	1	13173	13173		20.947	1.587	1	804890			37942	35959	31302	31326	41313	41313					0.1256645444939295
MHIIIILSVIM	11	Unmodified	_MHIIIILSVIM_					0	0	0		tr|A0A7D6ZZF1|A0A7D6ZZF1_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05805PE=3SV=1	tr|A0A7D6ZZF1|A0A7D6ZZF1_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05805PE=3SV=1	tr|A0A7D6ZZF1|A0A7D6ZZF1_9CLOTTVP38/TMEM64familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05805PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8828735351562	2	641.884912	1281.75527	-3.6311	-0.0023307	0.028569	1.8338E-05	-3.6025	-0.0023124	641.8847801872174	153.39	4.0845	151.94	150.68	154.77	-1.4516					420	106	6	0	0	0	0.70518	1	15293	15293		27.882	5.3026	1	809780			37943	35959	31302	31326	41314	41314					0.1256645444939295
MHIIVSTLVI	10	Oxidation (M)	_M(Oxidation (M))HIIVSTLVI_		M(1)HIIVSTLVI		M(71)HIIVSTLVI	0	0	1		tr|A0A553SNM8|A0A553SNM8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24840PE=4SV=1	tr|A0A553SNM8|A0A553SNM8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24840PE=4SV=1	tr|A0A553SNM8|A0A553SNM8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24840PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	571.3389282226562	2	571.33611	1140.65767	1.9053	0.0010886	3.1957	0.0018258	5.101	0.0029144	571.3379336706763	78.18	1.4109	78.18	77.544	78.955	0					90	33	5	0	0	0	0.37918	1	7890	7890		71.296	7.7619	1	18361000			37944	33938	31303	31327	41315	41315		747			0.09296388844904868
MHILFSDIF	9	Unmodified	_MHILFSDIF_					0	0	0			REV__ENSG00000198077|ENST00000301146|CYP2A7	REV__ENSG00000198077|ENST00000301146|CYP2A7	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.272216796875	2	561.786253	1121.55795	1.4873	0.00083555	-1.7926	-0.001007	-0.30527	-0.0001715	561.785088243374	131.86	0.74698	131.86	131.43	132.18	0					27	15	2	0	0	0	0.027441	1	15316	15316		55.504	23.549	1	156710	+		37945	22983	31304	31328	41316	41316					0.0020357123096346186
MHILFSDIF	9	Unmodified	_MHILFSDIF_					0	0	0			REV__ENSG00000198077|ENST00000301146|CYP2A7	REV__ENSG00000198077|ENST00000301146|CYP2A7	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	561.786253	1121.55795	4.905	0.0027556	-9.0076	-0.0050604	-4.1026	-0.0023048	562.2822413590294	133.24	0.58932	131.71	131.31	131.9	-1.5257	-0.071575	-0.0057058	NaN	55.504	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17856	+		37946	22983	31304	31328							0.0020357123096346186
MHIYFGEF	8	Unmodified	_MHIYFGEF_					0	0	0		ENST00000520572.1_1_8:143788537-143788795:-|nuORF	ENST00000520572.1_1_8:143788537-143788795:-|nuORF	ENST00000520572.1_1_8:143788537-143788795:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.3364868164062	2	522.236396	1042.45824	-0.038676	-2.0198E-05	-1.9233	-0.0010044	-1.962	-0.0010246	522.2344264815175	115.36	0.74651	113.96	113.62	114.37	-1.3977					21	14	2	0	0	0	0.028476	1	10775	10775		39.021	10.767	1	32716			37947	13109	31305	31329	41317	41317					-0.0612924638298864
MHIYFGEF	8	Unmodified	_MHIYFGEF_					0	0	0		ENST00000520572.1_1_8:143788537-143788795:-|nuORF	ENST00000520572.1_1_8:143788537-143788795:-|nuORF	ENST00000520572.1_1_8:143788537-143788795:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	522.236396	1042.45824	-0.34889	-0.0001822	-6.8726	-0.0035891	-7.2215	-0.0037713	522.7322252564924	115.09	0.54298	114.03	113.85	114.39	-1.055	0.036047	-0.0030626	NaN	39.021	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20057			37948	13109	31305	31329							-0.0612924638298864
MHKIDIIS	8	Unmodified	_MHKIDIIS_					0	0	0		ENSG00000158578|ENST00000650242|ALAS2;ENST00000498636.1_1_X:55035677-55046849:-|nuORF;nc|ENSG00000158578|P22557-3|ALAS2;nc|ENSG00000158578|P22557-2|ALAS2;nc|ENSG00000158578|P22557-4|ALAS2	ENSG00000158578|ENST00000650242|ALAS2	ENSG00000158578|ENST00000650242|ALAS2	MULTI-SECPEP	OvCa9_classI_Rep3	3	479.2976379394531	2	478.76532	955.516088	-0.18781	-8.9917E-05	0.18732	8.9681E-05	-0.00049343	-2.3624E-07	478.7634151546689	116.46	0.39554	115.42	115.24	115.64	-1.0414					11	7	2	0	0	0	0.028476	1	8712	8712		49.442	8.8689	1	7561.1			37949	5962	31306	31330	41318	41318					0.036550155424492914
MHKLVQELN	9	Unmodified	_MHKLVQELN_					0	0	0			REV__ENST00000544568.2_1_12:130955156-130991273:-|nuORF	REV__ENST00000544568.2_1_12:130955156-130991273:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	556.2962036132812	2	556.300059	1110.58556	-3.9321	-0.0021874	-1.2944	-0.00072007	-5.2265	-0.0029075	556.2991914868587	146.26	1.5443	145.3	144.9	146.44	-0.95946					66	30	3	0	0	0	0.53483	1	12290	12290		39.253	1.4413	1	177360	+		37950	27400	31307	31331	41319	41319					0.0346947449122581
MHKYLWWKKY	10	Unmodified	_MHKYLWWKKY_					0	0	0		ENSG00000197977|ENST00000354666|ELOVL2	ENSG00000197977|ENST00000354666|ELOVL2	ENSG00000197977|ENST00000354666|ELOVL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.75726318359375	3	494.928676	1481.7642	0.30248	0.0001497	2.4861	0.0012305	2.7886	0.0013802	495.2638553731794	66.938	0.74035	63.447	63.198	63.938	-3.4902					18	14	2	0	0	0	0.027372	1	4943	4943		20.03	10.819	1	26378			37951	8770	31308	31332	41320	41320					0.04258564130077502
MHKYLWWKKY	10	Unmodified	_MHKYLWWKKY_					0	0	0		ENSG00000197977|ENST00000354666|ELOVL2	ENSG00000197977|ENST00000354666|ELOVL2	ENSG00000197977|ENST00000354666|ELOVL2	MULTI-MATCH	OvCa9_classI_Rep3	3		3	494.928676	1481.7642	0.8828	0.00043692	3.808	0.0018847	4.6908	0.0023216	494.9305498161947	66.301	0.65993	63.355	63.01	63.67	-2.9459	-0.046113	0.00011825	NaN	14.694	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24071			37952	8770	31308	31332							0.04258564130077502
MHLDIFYDV	9	Unmodified	_MHLDIFYDV_					0	0	0			REV__L1PA8_dup7672|chr19:21549449-21550650:-|1.0893067253068611|0.363832208290546|1.58|386.0|68|3|anti-sense	REV__L1PA8_dup7672|chr19:21549449-21550650:-|1.0893067253068611|0.363832208290546|1.58|386.0|68|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	576.3441162109375	2	576.773342	1151.53213	-0.84064	-0.00048486	2.4355	0.0014047	1.5949	0.00091988	576.7745976547517	94.624	1.2936	92.155	91.618	92.912	-2.4685					34	25	2	0	0	0	0.027462	1	8292	8292		31.955	0	1	25357	+		37953	28580	31309	31333	41321	41321					-0.03757323011313929
MHLKSSYF	8	Unmodified	_MHLKSSYF_					0	0	0		ENST00000585090.1_1_18:3249478-3249580:+|nuORF	ENST00000585090.1_1_18:3249478-3249580:+|nuORF	ENST00000585090.1_1_18:3249478-3249580:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	506.75048828125	2	506.74967	1011.48479	-0.80872	-0.00040982	3.2344	0.0016391	2.4257	0.0012292	506.7511351298799	34.087	0.57335	34.087	33.824	34.398	0					27	11	4	0	0	0	0.61758	1	1616	1616		60.294	2.8413	1	355600			37954	14023	31310	31334	41322	41322					-0.02049557491648102
MHLNLSFMIL	10	Unmodified	_MHLNLSFMIL_					0	0	0			REV__MACF1-CMTM4|1|fusion	REV__MACF1-CMTM4|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	407.23370361328125	3	406.883967	1217.63007	0.24921	0.0001014	0.82903	0.00033732	1.0782	0.00043872	406.88372702523895	44.967	0.98162	41.928	41.613	42.595	-3.0385					27	18	2	0	0	0	0.027001	1	2231	2231		35.152	1.2304	1	19975	+		37955	28637	31311	31335	41323	41323					0.029961623130475346
MHLNLSFMIL	10	Unmodified	_MHLNLSFMIL_					0	0	0			REV__MACF1-CMTM4|1|fusion	REV__MACF1-CMTM4|1|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		3	406.883967	1217.63007	1.3777	0.00056057	-1.5967	-0.00064969	-0.21902	-8.9115E-05	407.21768499256535	44.719	0.29769	42.009	41.802	42.099	-2.7097	0.040436	-0.0017934	NaN	35.152	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8838.2	+		37956	28637	31311	31335							0.029961623130475346
MHLSPISIF	9	Unmodified	_MHLSPISIF_					0	0	0			REV__tr|A0A553SS03|A0A553SS03_NIACIMMPLfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_02030PE=4SV=1	REV__tr|A0A553SS03|A0A553SS03_NIACIMMPLfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_02030PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	522.7780151367188	2	522.78097	1043.54739	0.62719	0.00032788	-4.1348	-0.0021616	-3.5076	-0.0018337	522.7785887312914	124.27	1.1341	124.04	123.63	124.77	-0.23193					52	22	4	0	0	0	0.32337	1	12091	12091		60.294	7.9948	1	132650	+		37957	30785	31312	31336	41324	41324					0.027355885765246057
MHMVLDDIH	9	Unmodified	_MHMVLDDIH_					0	0	0			REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.3453979492188	2	555.757169	1109.49979	-0.10283	-5.7147E-05	3.4644	0.0019254	3.3616	0.0018682	555.7590664503192	68.613	0.5416	68.613	68.274	68.815	0					16	12	2	0	0	0	0.027462	1	6449	6449		47.916	22.465	1	341850	+		37958	17513	31313	31337	41325	41325					-0.050584336859401446
MHNSVKNELQ	10	Unmodified	_MHNSVKNELQ_					0	0	0			REV__tr|A0A7D6VSJ6|A0A7D6VSJ6_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13100PE=4SV=1	REV__tr|A0A7D6VSJ6|A0A7D6VSJ6_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13100PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	600.7994384765625	2	600.295504	1198.57646	2.5175	0.0015113	0.51061	0.00030651	3.0281	0.0018178	600.2954217526964	86.894	0.61976	86.894	86.637	87.257	0					28	14	3	0	0	0	0.49595	1	9182	9182		54.722	6.1208	1	731500	+		37959	31511	31314	31338	41326	41326					-0.014889188651295626
MHNSVKNELQ	10	Unmodified	_MHNSVKNELQ_					0	0	0			REV__tr|A0A7D6VSJ6|A0A7D6VSJ6_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13100PE=4SV=1	REV__tr|A0A7D6VSJ6|A0A7D6VSJ6_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13100PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	600.295504	1198.57646	2.5175	0.0015113	0.51061	0.00030651	3.0281	0.0018178	600.2954217526964	86.894	0.61976	86.894	86.637	87.257	0	0	0	NaN	54.722	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	731500	+		37960	31511	31314	31338							-0.014889188651295626
MHQWNVRFP	9	Unmodified	_MHQWNVRFP_					0	0	0		ENST00000316715.8_1_X:13798007-13801499:-|nuORF	ENST00000316715.8_1_X:13798007-13801499:-|nuORF	ENST00000316715.8_1_X:13798007-13801499:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	607.3117065429688	2	607.798017	1213.58148	0.87591	0.00053237	-3.7818	-0.0022986	-2.9059	-0.0017662	608.296119977466	89.445	0.6878	86.866	86.507	87.195	-2.5783					24	13	3	0	0	0	0.027462	1	7711	7711		21.96	15.647	1	32136			37961	10346	31315	31339	41327	41327					-0.016765702118391346
MHSIPLKAKQI	11	Unmodified	_MHSIPLKAKQI_					0	0	0		ENST00000233813.4_1_2:217540775-217540844:-|nuORF	ENST00000233813.4_1_2:217540775-217540844:-|nuORF	ENST00000233813.4_1_2:217540775-217540844:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3688354492188	2	633.373558	1264.73256	-4.5141	-0.0028591	-2.3979	-0.0015187	-6.912	-0.0043779	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.72473	1	15601	15601		19.104	0	1	369460			37962	9735	31316	31340	41328	41328					0.11078571376151558
MHTCSPSTAN	10	Carbamidomethyl (C)	_MHTC(Carbamidomethyl (C))SPSTAN_	MHTC(1)SPSTAN		MHTC(42)SPSTAN		0	1	0		ENST00000566733.2_1_6:3909509-3909881:-|nuORF	ENST00000566733.2_1_6:3909509-3909881:-|nuORF	ENST00000566733.2_1_6:3909509-3909881:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.2216796875	2	553.223691	1104.43283	-1.0946	-0.00060558	-2.5046	-0.0013856	-3.5992	-0.0019912	553.2221803360951	124.68	1.0922	123.29	123.02	124.11	-1.3908					39	20	3	0	0	0	0.59703	1	11829	11829		42.396	10.817	1	69633			37963	13850	31317	31341	41329	41329	158				-0.11521088967720061
MHTCSPSTAN	10	Carbamidomethyl (C)	_MHTC(Carbamidomethyl (C))SPSTAN_					0	1	0		ENST00000566733.2_1_6:3909509-3909881:-|nuORF	ENST00000566733.2_1_6:3909509-3909881:-|nuORF	ENST00000566733.2_1_6:3909509-3909881:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	553.223691	1104.43283	0.92862	0.00051373	-4.6154	-0.0025533	-3.6868	-0.0020396	553.2209798783924	123.71	0.88567	123.47	123.14	124.03	-0.23193	0.12741	-0.00053934	NaN	42.396	31	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54747			37964	13850	31317	31341			158				-0.11521088967720061
MHTCSPSTAN	10	Carbamidomethyl (C)	_MHTC(Carbamidomethyl (C))SPSTAN_					0	1	0		ENST00000566733.2_1_6:3909509-3909881:-|nuORF	ENST00000566733.2_1_6:3909509-3909881:-|nuORF	ENST00000566733.2_1_6:3909509-3909881:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	553.223691	1104.43283	1.01	0.00055874	-4.635	-0.0025642	-3.625	-0.0020055	553.2208733771213	124.32	1.0941	123.28	122.97	124.07	-1.0377	-0.069116	-0.00056105	NaN	42.396	35	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60618			37965	13850	31317	31341			158				-0.11521088967720061
MHTDTCALN	9	Unmodified	_MHTDTCALN_					0	0	0			REV__OR4C46|p.E194V|1|0.22|ENSG00000185926|chr11:54603418-54603418|T/A|missense_variant	REV__OR4C46|p.E194V|1|0.22|ENSG00000185926|chr11:54603418-54603418|T/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.2290344238281	2	503.210052	1004.40555	-0.62493	-0.00031447	2.8294	0.0014238	2.2044	0.0011093	503.2114284820903	37.962	0.1763	37.962	37.806	37.983	0					6	3	2	0	0	0	0.027462	1	2104	2104		30.504	11.144	1	279920	+		37966	22545	31318	31342	41330	41330					-0.09647572508094981
MHVLPVNPW	9	Unmodified	_MHVLPVNPW_					0	0	0			REV__ENST00000367051.5_1_1:207793326-207795335:+|nuORF	REV__ENST00000367051.5_1_1:207793326-207795335:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	546.7924194335938	2	546.786587	1091.55862	0.93582	0.0005117	3.0305	0.001657	3.9663	0.0021687	546.7881225030743	155.8	2.8358	155.8	155.12	157.96	0					140	55	3	0	0	0	0.59983	1	18449	18449		31.955	5.1588	1	297140	+		37967	24889	31319	31343	41331	41331					0.016504106706634047
MHVRELTN	8	Unmodified	_MHVRELTN_					0	0	0			REV__COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant	REV__COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.7532653808594	2	500.255651	998.496749	-2.1947	-0.0010979	0.62686	0.00031359	-1.5678	-0.00078432	500.25636080712775	139.8	0.29587	138.77	138.59	138.89	-1.0339					7	5	2	0	0	0	0.028476	1	11492	11492		29.15	0	1	11473	+		37968	16227	31320	31344	41332	41332					-0.002559407484682197
MHYDYFRPQ	9	Unmodified	_MHYDYFRPQ_					0	0	0		tr|A0A553SSN8|A0A553SSN8_NIACINAD(P)-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_03420PE=4SV=1	tr|A0A553SSN8|A0A553SSN8_NIACINAD(P)-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_03420PE=4SV=1	tr|A0A553SSN8|A0A553SSN8_NIACINAD(P)-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_03420PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	628.018310546875	2	628.77949	1255.54443	2.2718	0.0014285	-3.9632	-0.002492	-1.6913	-0.0010635	628.7774109284898	98.714	0.24916	98.714	98.552	98.801	0					7	5	2	0	0	0	0.027462	1	10884	10884		10.265	0	1	243860			37969	34395	31321	31345	41333	41333					-0.07312286548267366
MIAAQVLVI	9	Unmodified	_MIAAQVLVI_					0	0	0		tr|A0A7D6W168|A0A7D6W168_9CLOTFtsW/RodA/SpoVEfamilycellcycleproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02600PE=4SV=1	tr|A0A7D6W168|A0A7D6W168_9CLOTFtsW/RodA/SpoVEfamilycellcycleproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02600PE=4SV=1	tr|A0A7D6W168|A0A7D6W168_9CLOTFtsW/RodA/SpoVEfamilycellcycleproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02600PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	479.2962341308594	2	479.293714	956.572874	1.1526	0.00055244	2.5925	0.0012426	3.7451	0.001795	479.29464928624355	29.301	0.75868	26.591	26.259	27.017	-2.7097					21	15	2	0	0	0	0.6653	1	699	699		24.203	4.8428	1	21092			37970	35401	31322	31346	41334	41334					0.0928506309895738
MIAEFKAAF	9	Unmodified	_MIAEFKAAF_					0	0	0		ENSG00000101470|ENST00000372555|TNNC2	ENSG00000101470|ENST00000372555|TNNC2	ENSG00000101470|ENST00000372555|TNNC2	MULTI-MSMS	OvCa9_classI_Rep3	3	514.2684936523438	2	514.267696	1026.52084	1.6882	0.0008682	0.70477	0.00036244	2.393	0.0012306	514.2679579094408	122.07	0.78583	121.04	120.69	121.48	-1.0286					33	14	3	0	0	0	0.60342	1	9373	9373		31.53	3.6476	1	79410			37971	2182	31323	31347	41335	41335					0.008638996851914271
MIAEFKAAF	9	Unmodified	_MIAEFKAAF_					0	0	0		ENSG00000101470|ENST00000372555|TNNC2	ENSG00000101470|ENST00000372555|TNNC2	ENSG00000101470|ENST00000372555|TNNC2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.267696	1026.52084	-0.61092	-0.00031418	2.9805	0.0015328	2.3696	0.0012186	514.2689749183776	121.46	0.94022	121.27	120.95	121.89	-0.19718	0.1478	0.00093019	NaN	31.53	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63294			37972	2182	31323	31347							0.008638996851914271
MIAEFKAAF	9	Unmodified	_MIAEFKAAF_					0	0	0		ENSG00000101470|ENST00000372555|TNNC2	ENSG00000101470|ENST00000372555|TNNC2	ENSG00000101470|ENST00000372555|TNNC2	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	514.267696	1026.52084	0.042016	2.1607E-05	2.2645	0.0011646	2.3065	0.0011862	514.2687243356565	122.41	0.89293	121.05	120.81	121.7	-1.3666	-0.069582	0.00019374	NaN	31.53	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80425			37973	2182	31323	31347							0.008638996851914271
MIAGPPIAG	9	Unmodified	_MIAGPPIAG_					0	0	0		ENSG00000147100|ENST00000587091|SLC16A2	ENSG00000147100|ENST00000587091|SLC16A2	ENSG00000147100|ENST00000587091|SLC16A2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	413.77984619140625	2	413.728206	825.44186	-1.8668	-0.00077233	-2.496	-0.0010327	-4.3628	-0.001805	413.7270323781986	108.19	0.75189	106.46	106.27	107.02	-1.7256					27	14	3	0	0	0	0.02744	1	9905	9905		49.211	28.729	1	45219			37974	5330	31324	31348	41336	41336					0.02215672450938655
MIAGPPIAG	9	Unmodified	_MIAGPPIAG_					0	0	0		ENSG00000147100|ENST00000587091|SLC16A2	ENSG00000147100|ENST00000587091|SLC16A2	ENSG00000147100|ENST00000587091|SLC16A2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	413.728206	825.44186	0.70263	0.0002907	-4.3056	-0.0017813	-3.603	-0.0014906	413.7262554529181	106.79	0.69419	106.49	106.23	106.92	-0.30836	0.081679	-0.0003063	NaN	49.211	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35137			37975	5330	31324	31348							0.02215672450938655
MIAGPPIAG	9	Unmodified	_MIAGPPIAG_					0	0	0		ENSG00000147100|ENST00000587091|SLC16A2	ENSG00000147100|ENST00000587091|SLC16A2	ENSG00000147100|ENST00000587091|SLC16A2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	413.728206	825.44186	1.0748	0.00044466	-4.9945	-0.0020664	-3.9198	-0.0016217	413.72601099334025	107.53	0.99284	106.26	106	106.99	-1.267	-0.13996	-0.00087636	NaN	49.211	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52075			37976	5330	31324	31348							0.02215672450938655
MIAIALVIF	9	Unmodified	_MIAIALVIF_					0	0	0		tr|A0A553SH77|A0A553SH77_NIACIYdbS-likePHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12315PE=4SV=1	tr|A0A553SH77|A0A553SH77_NIACIYdbS-likePHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12315PE=4SV=1	tr|A0A553SH77|A0A553SH77_NIACIYdbS-likePHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12315PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.2939453125	2	495.806457	989.598361	-0.99581	-0.00049373	4.2674	0.0021158	3.2716	0.0016221	495.80843495453354	88.911	0.84207	86.308	85.882	86.725	-2.6027					41	16	3	0	0	0	0.027462	1	7587	7587		21.702	11.518	1	117540			37977	33246	31325	31349	41337	41337					0.10314537621400177
MIAIALVIF	9	Unmodified	_MIAIALVIF_					0	0	0		tr|A0A553SH77|A0A553SH77_NIACIYdbS-likePHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12315PE=4SV=1	tr|A0A553SH77|A0A553SH77_NIACIYdbS-likePHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12315PE=4SV=1	tr|A0A553SH77|A0A553SH77_NIACIYdbS-likePHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12315PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	495.806457	989.598361	1.4489	0.00071837	1.7367	0.00086107	3.1856	0.0015794	495.80713263818484	87.446	0.88554	86.015	85.741	86.627	-1.4311	-0.17343	-0.00096308	NaN	49.211	41	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126080			37978	33246	31325	31349							0.10314537621400177
MIAIALVIF	9	Unmodified	_MIAIALVIF_					0	0	0		tr|A0A553SH77|A0A553SH77_NIACIYdbS-likePHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12315PE=4SV=1	tr|A0A553SH77|A0A553SH77_NIACIYdbS-likePHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12315PE=4SV=1	tr|A0A553SH77|A0A553SH77_NIACIYdbS-likePHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12315PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	495.806457	989.598361	-0.56909	-0.00028216	3.861	0.0019143	3.2919	0.0016322	495.8082284105422	88.373	0.89529	86.242	85.854	86.75	-2.1309	0.053984	0.0011434	NaN	49.211	40	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164300			37979	33246	31325	31349							0.10314537621400177
MIAILAGCGT	10	Carbamidomethyl (C)	_MIAILAGC(Carbamidomethyl (C))GT_	MIAILAGC(1)GT		MIAILAGC(46)GT		0	1	0		tr|A0A553SKZ2|A0A553SKZ2_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_19625PE=3SV=1	tr|A0A553SKZ2|A0A553SKZ2_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_19625PE=3SV=1	tr|A0A553SKZ2|A0A553SKZ2_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_19625PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.75518798828125	2	503.756638	1005.49872	-0.40841	-0.00020574	-3.0477	-0.0015353	-3.4561	-0.001741	503.75495702126386	116.18	1.0137	114.82	114.55	115.56	-1.3645					35	19	2	0	0	0	0.56767	1	10854	10854		45.952	8.1404	1	82720			37980	33668	31326	31350	41338	41338	381				-0.0038064805486328623
MIAILAGCGT	10	Carbamidomethyl (C)	_MIAILAGC(Carbamidomethyl (C))GT_					0	1	0		tr|A0A553SKZ2|A0A553SKZ2_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_19625PE=3SV=1	tr|A0A553SKZ2|A0A553SKZ2_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_19625PE=3SV=1	tr|A0A553SKZ2|A0A553SKZ2_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_19625PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	503.756638	1005.49872	-0.92358	-0.00046526	-1.5269	-0.00076919	-2.4505	-0.0012345	503.75562486579	115.11	1.2849	114.99	114.65	115.94	-0.11777	0.098206	0.0007676	NaN	45.952	40	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45704			37981	33668	31326	31350			381				-0.0038064805486328623
MIAILAGCGT	10	Carbamidomethyl (C)	_MIAILAGC(Carbamidomethyl (C))GT_					0	1	0		tr|A0A553SKZ2|A0A553SKZ2_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_19625PE=3SV=1	tr|A0A553SKZ2|A0A553SKZ2_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_19625PE=3SV=1	tr|A0A553SKZ2|A0A553SKZ2_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_19625PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	503.756638	1005.49872	-0.92283	-0.00046488	-2.0227	-0.001019	-2.9456	-0.0014839	503.7553460175419	115.9	0.88831	114.86	114.6	115.49	-1.0414	-0.028787	0.00026805	NaN	45.952	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52567			37982	33668	31326	31350			381				-0.0038064805486328623
MIAILKQSA	9	Unmodified	_MIAILKQSA_					0	0	0		ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.7909851074219	2	487.788795	973.563038	3.5562	0.0017347	-0.73408	-0.00035808	2.8221	0.0013766	487.7882512057077	132.82	4.8462	131.32	130.38	135.22	-1.5015					236	97	4	0	0	0	0.50149	1	13058	13058		42.396	1.8235	1	143240			37983	5345	31327	31351	41339	41339					0.0751987509358969
MIAKLVAFVA	10	Unmodified	_MIAKLVAFVA_					0	0	0			REV__nc|ENSG00000144893|Q86YW9-4|MED12L	REV__nc|ENSG00000144893|Q86YW9-4|MED12L	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.2972412109375	2	531.822638	1061.63072	2.264	0.001204	2.5465	0.0013543	4.8105	0.0025583	531.8237317224247	82.607	0.68378	82.607	82.394	83.078	0					32	15	3	0	0	0	0.026612	1	8596	8596		55.504	16.698	1	607800	+		37984	19943	31328	31352	41340	41340					0.10237325024399979
MIAVIAILAIT	11	Unmodified	_MIAVIAILAIT_					0	0	0		tr|A0A7D6ZX02|A0A7D6ZX02_9CLOTTypeIIsecretionsystemproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20215PE=4SV=1	tr|A0A7D6ZX02|A0A7D6ZX02_9CLOTTypeIIsecretionsystemproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20215PE=4SV=1	tr|A0A7D6ZX02|A0A7D6ZX02_9CLOTTypeIIsecretionsystemproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20215PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	564.8579711914062	2	564.856678	1127.6988	1.0991	0.00062086	0.6873	0.00038823	1.7864	0.0010091	564.856820138611	152.24	0.69955	152.24	151.97	152.67	0					31	17	3	0	0	0	0.69081	1	17845	17845		32.812	0	1	236530			37985	35861	31329	31353	41341	41341					0.14006149884380648
MIAVSRTRR	9	Unmodified	_MIAVSRTRR_					0	0	0		sp|F5HEN7|SCP_HCMVMSmallcapsomere-interactingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=SCPPE=3SV=1	sp|F5HEN7|SCP_HCMVMSmallcapsomere-interactingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=SCPPE=3SV=1	sp|F5HEN7|SCP_HCMVMSmallcapsomere-interactingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=SCPPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3165893554688	2	545.319117	1088.62368	-2.8527	-0.0015556	-1.5958	-0.00087021	-4.4485	-0.0024258	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.66262	1	11934	11934		24.519	1.4767	1	337600			37986	32867	31330	31354	41342	41342					0.08291405196541746
MICRAHQLV	9	Unmodified	_MICRAHQLV_					0	0	0		ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENSG00000149923|ENST00000279387|PPP4C	ENST00000566749.5_1_16:30094185-30096380:+|nuORF	ENST00000566749.5_1_16:30094185-30096380:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	535.832763671875	2	535.783521	1069.55249	0.5302	0.00028407	1.1982	0.00064197	1.7284	0.00092604	536.2853016302083	118.09	0.44482	117.06	116.69	117.13	-1.0324					11	8	2	0	0	0	0.027462	1	8864	8864		30.504	6.9809	1	9364.4			37987	5490	31331	31355	41343	41343					0.02049569167502341
MIDDPSKGKE	10	Unmodified	_MIDDPSKGKE_					0	0	0		ENST00000429154.6_1_19:44507153-44511203:+|nuORF	ENST00000429154.6_1_19:44507153-44511203:+|nuORF	ENST00000429154.6_1_19:44507153-44511203:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	560.7922973632812	2	560.271164	1118.52777	1.1052	0.00061924	-0.37011	-0.00020736	0.73513	0.00041187	561.274651326313	65.033	0.77402	61.548	61.066	61.84	-3.4854					24	15	3	0	0	0	0.026551	1	4663	4663		69.628	10.846	1	60471			37988	11777	31332	31356	41344	41344					-0.0267483222487499
MIDEAVFSLP	10	Unmodified	_MIDEAVFSLP_					0	0	0		ENSG00000158966|ENST00000651257|CACHD1;nc|ENSG00000158966|Q5VU97-2|CACHD1;CACHD1|p.D435Rfs*9|1|0.08|ENSG00000158966|chr1:64652225-64652226|-/A|frameshift_variant	ENSG00000158966|ENST00000651257|CACHD1	ENSG00000158966|ENST00000651257|CACHD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.289306640625	2	561.281	1120.54745	2.3733	0.0013321	-3.6665	-0.0020579	-1.2932	-0.00072583	561.2788672062948	83.809	0.58928	83.809	83.419	84.009	0					23	13	2	0	0	0	0.02649	1	8684	8684		60.972	0	1	2395500			37989	5981	31333	31357	41345	41345					-0.008004562141195493
MIDIGVQLEP	10	Unmodified	_MIDIGVQLEP_					0	0	0			REV__ENSG00000149313|ENST00000278618|AASDHPPT	REV__ENSG00000149313|ENST00000278618|AASDHPPT	MULTI-MSMS	OvCa99_classI_Rep5	1	557.7957763671875	2	557.794275	1113.574	2.4375	0.0013596	-0.070511	-3.933E-05	2.367	0.0013203	557.7940345891211	85.259	2.5743	85.259	83.419	85.994	0					157	61	4	0	0	0	0.53807	1	8905	8905		49.536	3.5638	1	5211400	+		37990	20158	31334	31358	41346	41346					0.02175232677200256
MIDSIRVDCIQ	11	Unmodified	_MIDSIRVDCIQ_					0	0	0			REV__nc|ENSG00000163507|Q8TCG1-2|CIP2A	REV__nc|ENSG00000163507|Q8TCG1-2|CIP2A	MULTI-MSMS	OvCa99_classI_Rep5	1	646.8245239257812	2	646.820498	1291.62644	1.8647	0.0012061	3.353	0.0021688	5.2177	0.0033749	646.8226563548138	135.55	1.126	135.55	135.22	136.35	0					41	23	2	0	0	0	0.43993	1	15792	15792		58.23	1.7961	1	2018600	+		37991	20842	31335	31359	41347	41347					-0.007705522514470431
MIEALMIF	8	Unmodified	_MIEALMIF_					0	0	0			REV__ENST00000381165.3_1_17:5392660-5392717:+|nuORF	REV__ENST00000381165.3_1_17:5392660-5392717:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.260986328125	2	484.2532	966.491847	1.2001	0.00058114	-1.4388	-0.00069673	-0.2387	-0.00011559	484.25246897251884	86.335	1.4868	83.697	83.352	84.838	-2.6384					57	29	4	0	0	0	0.59103	1	7306	7306		65.897	0	1	526820	+		37992	25192	31336	31360	41348	41348					0.007260390645683401
MIEDIESVL	9	Unmodified	_MIEDIESVL_					0	0	0			REV__tr|A0A553SP89|A0A553SP89_NIACIUDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)pyrophosphoryl-undecaprenolN-acetylglucosaminetransferaseOS=NialliacirculansOX=1397GN=murGPE=3SV=1	REV__tr|A0A553SP89|A0A553SP89_NIACIUDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)pyrophosphoryl-undecaprenolN-acetylglucosaminetransferaseOS=NialliacirculansOX=1397GN=murGPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	524.764404296875	2	524.765183	1047.51581	0.20193	0.00010597	1.2951	0.00067962	1.497	0.00078559	524.7656821211727	129.4	1.9283	128.29	127.55	129.48	-1.1121					82	38	4	0	0	0	0.62352	1	10208	10208		29.15	2.4566	1	121170	+		37993	30512	31337	31361	41349	41349					-0.006044489680562037
MIELPLIIA	9	Unmodified	_MIELPLIIA_					0	0	0			REV__ENST00000495601.1_1_2:148716324-148733527:-|nuORF	REV__ENST00000495601.1_1_2:148716324-148733527:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	506.8096618652344	2	506.809196	1011.60384	1.4081	0.00071364	1.3709	0.00069476	2.779	0.0014084	506.809990859047	88.555	2.3705	87.187	86.69	89.061	-1.3676					168	47	5	0	0	0	0.25214	3	7797	7761;7773;7797		68.485	7.3573	1	5233500	+		37994	26748	31338	31362	41350;41351;41352	41352					0.0985021641321282
MIELPLIIA	9	Unmodified	_MIELPLIIA_					0	0	0			REV__ENST00000495601.1_1_2:148716324-148733527:-|nuORF	REV__ENST00000495601.1_1_2:148716324-148733527:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	506.81121826171875	2	506.809196	1011.60384	-0.96964	-0.00049142	3.4229	0.0017348	2.4533	0.0012434	506.8110395873254	89.248	2.4224	87.118	86.702	89.124	-2.1309					173	47	5	0	0	0	0.32337	3	5476	5476;5524;5536		60.294	10.758	1	9108500	+		37995	26748	31338	31362	41353;41354;41355	41353					0.0985021641321282
MIELPLIIA	9	Unmodified	_MIELPLIIA_					0	0	0			REV__ENST00000495601.1_1_2:148716324-148733527:-|nuORF	REV__ENST00000495601.1_1_2:148716324-148733527:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.81201171875	2	506.809196	1011.60384	0.31561	0.00015995	2.3033	0.0011673	2.6189	0.0013273	506.81045586251577	89.749	2.4253	87.174	86.704	89.129	-2.575					167	47	5	0	0	0	0.17908	1	7704	7704		79.939	13.51	1	8441000	+		37996	26748	31338	31362	41356	41356					0.0985021641321282
MIEMVDISLPL	11	Unmodified	_MIEMVDISLPL_					0	0	0			REV__tr|A0A553SF88|A0A553SF88_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_08460PE=3SV=1	REV__tr|A0A553SF88|A0A553SF88_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_08460PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	630.3731689453125	2	630.832543	1259.65053	-0.75566	-0.0004767	-4.4164	-0.002786	-5.172	-0.0032627	630.8295309093571	87.4	0.75435	84.773	84.499	85.253	-2.6269					29	14	3	0	0	0	0.025257	1	7459	7459		52.937	14.131	1	54480	+		37997	29548	31339	31363	41357	41357					0.031092881821905394
MIERVRCEI	9	Unmodified	_MIERVRCEI_					0	0	0			REV__tr|A0A7D7A1I0|A0A7D7A1I0_9CLOTFlavinreductasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04290PE=3SV=1	REV__tr|A0A7D7A1I0|A0A7D7A1I0_9CLOTFlavinreductasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04290PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	574.8001708984375	2	574.799368	1147.58418	-0.32538	-0.00018703	2.7472	0.0015791	2.4218	0.001392	574.8008248243444	132.16	0.98102	131.93	131.64	132.62	-0.22697					52	19	4	0	0	0	0.34132	1	13050	13050		58.23	1.5089	1	141440	+		37998	32493	31340	31364	41358	41358					0.01629517130777458
MIETKDLR	8	Unmodified	_MIETKDLR_					0	0	0		tr|A0A7D7A5D5|A0A7D7A5D5_9CLOTCupindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06760PE=4SV=1	tr|A0A7D7A5D5|A0A7D7A5D5_9CLOTCupindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06760PE=4SV=1	tr|A0A7D7A5D5|A0A7D7A5D5_9CLOTCupindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06760PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	503.2739562988281	2	503.273509	1004.53247	1.0108	0.00050872	1.6549	0.00083286	2.6657	0.0013416	503.2743555648163	142.82	0.58264	142.82	142.49	143.07	0					20	11	2	0	0	0	0.59904	1	16683	16683		64.207	2.0999	1	65449			37999	36166	31341	31365	41359	41359					0.030380967085420707
MIEVLHLV	8	Unmodified	_MIEVLHLV_					0	0	0			REV__nc|ENSG00000177398|Q5DID0-3|UMODL1	REV__nc|ENSG00000177398|Q5DID0-3|UMODL1	MULTI-SECPEP	OvCa9_classI_Rep2	2	476.7947082519531	2	477.278063	952.541574	-0.060537	-2.8893E-05	-2.5132	-0.0011995	-2.5737	-0.0012284	477.27624826790185	110.17	1.2358	110	109.66	110.9	-0.17237					48	24	3	0	0	0	0.028476	1	10414	10414		28.254	6.5519	1	140710	+		38000	22003	31342	31366	41360	41360					0.06340490064872029
MIFGTAKFVF	10	Unmodified	_MIFGTAKFVF_					0	0	0			REV__ENSG00000180919|ENST00000316529|OR56B4	REV__ENSG00000180919|ENST00000316529|OR56B4	MULTI-MSMS	OvCa9_classI_Rep2	2	580.8134155273438	2	580.81227	1159.60999	0.012189	7.0794E-06	0.24805	0.00014407	0.26024	0.00015115	580.8121961088772	31.051	0.4914	28.341	28.15	28.641	-2.7097					15	9	2	0	0	0	0.75313	1	906	906		24.519	8.5124	1	34079	+		38001	22207	31343	31367	41361	41361					0.03656734644732751
MIFPLSETP	9	Unmodified	_MIFPLSETP_					0	0	0			REV__tr|A0A553SS59|A0A553SS59_NIACIImidazolonepropionaseOS=NialliacirculansOX=1397GN=hutIPE=3SV=1	REV__tr|A0A553SS59|A0A553SS59_NIACIImidazolonepropionaseOS=NialliacirculansOX=1397GN=hutIPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.9849243164062	2	517.764986	1033.51542	2.5074	0.0012983	4.1522	0.0021499	6.6596	0.0034481	517.7669800531435	89.463	0.45203	89.463	89.352	89.804	0					25	10	3	0	0	0	0.027462	1	9541	9541		40.573	1.7665	1	2084000	+		38002	30805	31344	31368	41362	41362					1.7610275335755432E-06
MIGAFYQP	8	Unmodified	_MIGAFYQP_					0	0	0		tr|A0A553SL93|A0A553SL93_NIACI3-dehydroquinatesynthaseOS=NialliacirculansOX=1397GN=aroBPE=3SV=1	tr|A0A553SL93|A0A553SL93_NIACI3-dehydroquinatesynthaseOS=NialliacirculansOX=1397GN=aroBPE=3SV=1	tr|A0A553SL93|A0A553SL93_NIACI3-dehydroquinatesynthaseOS=NialliacirculansOX=1397GN=aroBPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	463.7253112792969	2	463.725664	925.436775	0.93981	0.00043581	-2.6231	-0.0012164	-1.6833	-0.0007806	463.72428757092064	131.87	1.5048	131.87	131.34	132.84	0					73	31	3	0	0	0	0.38514	1	15328	15328		90.939	25.136	1	647900			38003	33699	31345	31369	41363	41363					-0.028926314117029506
MIGANNFLVDV	11	Unmodified	_MIGANNFLVDV_					0	0	0			REV__tr|A0A553SUS6|A0A553SUS6_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06705PE=3SV=1	REV__tr|A0A553SUS6|A0A553SUS6_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06705PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	596.8042602539062	2	596.805174	1191.59579	-0.1024	-6.1115E-05	-3.2568	-0.0019437	-3.3592	-0.0020048	596.8031960961883	113.63	0.98775	113.51	113.22	114.21	-0.11777					34	19	2	0	0	0	0.67529	1	10795	10795		37.812	1.3648	1	95418	+		38004	31116	31346	31370	41364	41364					0.007660374257739022
MIGFLFAGV	9	Unmodified	_MIGFLFAGV_					0	0	0			REV__tr|A0A553SHW9|A0A553SHW9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_13790PE=4SV=1	REV__tr|A0A553SHW9|A0A553SHW9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_13790PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.737060546875	2	477.759507	953.50446	-1.0057	-0.00048049	4.3483	0.0020775	3.3426	0.001597	477.7611423555317	118.72	0.72701	117.38	117.15	117.88	-1.3444					21	13	2	0	0	0	0.027462	1	11106	11106		29.842	0	1	38334	+		38005	29845	31347	31371	41365	41365					0.02584818519108012
MIGIMLMAL	9	2 Oxidation (M)	_MIGIM(Oxidation (M))LM(Oxidation (M))AL_		MIGIM(1)LM(1)AL		M(-40)IGIM(40)LM(48)AL	0	0	2			REV__tr|A0A7D7A134|A0A7D7A134_9CLOTTransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_13775PE=4SV=1	REV__tr|A0A7D7A134|A0A7D7A134_9CLOTTransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_13775PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	512.7643432617188	2	512.765617	1023.51668	NaN	NaN	NaN	NaN	NaN	NaN	NaN	155.94	1	155.94	155.44	156.44	0								0	0	0	0.17074	1	18273	18273		49.211	8.6382	3		+		38006	32468	31348	31372	41366	41366		719;720			0.005863508756419833
MIGLTVLAR	9	Unmodified	_MIGLTVLAR_					0	0	0			REV__ENSG00000188822|ENST00000374472|CNR2	REV__ENSG00000188822|ENST00000374472|CNR2	MULTI-MSMS	OvCa9_classI_Rep3	3	487.2922058105469	2	487.296788	972.579022	-3.3803	-0.0016472	-4.1977	-0.0020455	-7.578	-0.0036927	487.29467626542595	143.85	1.2856	142.86	142.44	143.72	-0.9903					55	25	3	0	0	0	0.59983	1	11984	11984		31.955	3.7006	1	83168	+		38007	22742	31349	31373	41367	41367					0.09163581330483339
MIGLTVLAR	9	Unmodified	_MIGLTVLAR_					0	0	0			REV__ENSG00000188822|ENST00000374472|CNR2	REV__ENSG00000188822|ENST00000374472|CNR2	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	487.296788	972.579022	-0.41954	-0.00020444	-7.0695	-0.003445	-7.4891	-0.0036494	487.29330176490924	144.21	0.93372	142.77	142.48	143.41	-1.4357	-0.16779	-0.0017815	NaN	31.955	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39708	+		38008	22742	31349	31373							0.09163581330483339
MIGPLRTNGK	10	Unmodified	_MIGPLRTNGK_					0	0	0			REV__nc|ENSG00000077327|O75602-2|SPAG6	REV__nc|ENSG00000077327|O75602-2|SPAG6	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.812255859375	2	543.808051	1085.60155	-0.19446	-0.00010575	1.7124	0.00093122	1.5179	0.00082547	543.8082250452802	122.74	1.2517	121.37	120.6	121.85	-1.3666					60	24	3	0	0	0	0.48198	1	11577	11577		56.721	0	1	106640	+		38009	17010	31350	31374	41368	41368					0.06217180728117455
MIGPLRTNGK	10	Unmodified	_MIGPLRTNGK_					0	0	0			REV__nc|ENSG00000077327|O75602-2|SPAG6	REV__nc|ENSG00000077327|O75602-2|SPAG6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	543.808051	1085.60155	1.3733	0.00074681	0.2368	0.00012877	1.6101	0.00087558	543.8074386438981	122.36	1.153	121.33	120.69	121.85	-1.0286	0.073498	-0.0015309	NaN	56.721	52	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127030	+		38010	17010	31350	31374							0.06217180728117455
MIGPLRTNGK	10	Unmodified	_MIGPLRTNGK_					0	0	0			REV__nc|ENSG00000077327|O75602-2|SPAG6	REV__nc|ENSG00000077327|O75602-2|SPAG6	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	543.808051	1085.60155	-0.19446	-0.00010575	1.7124	0.00093122	1.5179	0.00082547	543.8082250452802	122.74	1.2517	121.37	120.6	121.85	-1.3666	0.11155	7.4031E-05	NaN	56.721	60	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106640	+		38011	17010	31350	31374							0.06217180728117455
MIGQIHIYIE	10	Unmodified	_MIGQIHIYIE_					0	0	0		tr|A0A553SKL0|A0A553SKL0_NIACISporulationproteinYqfCOS=NialliacirculansOX=1397GN=yqfCPE=4SV=1	tr|A0A553SKL0|A0A553SKL0_NIACISporulationproteinYqfCOS=NialliacirculansOX=1397GN=yqfCPE=4SV=1	tr|A0A553SKL0|A0A553SKL0_NIACISporulationproteinYqfCOS=NialliacirculansOX=1397GN=yqfCPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	608.8509521484375	2	608.823366	1215.63218	0.69743	0.00042461	0.37645	0.00022919	1.0739	0.0006538	608.8241127032836	112.24	0.81618	110.73	110.53	111.34	-1.5111					27	15	3	0	0	0	0.026568	1	10354	10354		44.377	0	1	41292			38012	33627	31351	31375	41369	41369					0.03298914322499513
MIGSVLVWY	9	Unmodified	_MIGSVLVWY_					0	0	0		tr|A0A7D6VUH5|A0A7D6VUH5_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_07390PE=4SV=1	tr|A0A7D6VUH5|A0A7D6VUH5_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_07390PE=4SV=1	tr|A0A7D6VUH5|A0A7D6VUH5_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_07390PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	534.2860107421875	2	534.283346	1066.55214	1.3936	0.00074458	2.1236	0.0011346	3.5172	0.0018792	534.2843679726661	147.02	1.4126	147.02	146.62	148.03	0					66	28	4	0	0	0	0.52083	1	17232	17232		40.573	3.4135	1	1244100			38013	35186	31352	31376	41370	41370					0.021524727192854698
MIHHLSLSK	9	Unmodified	_MIHHLSLSK_					0	0	0		L1ME4a_dup15683|chr7:135159667-135159953:+|1.2796223879496305|0.4304620133998951|1.57|429.0|2|1|sense	L1ME4a_dup15683|chr7:135159667-135159953:+|1.2796223879496305|0.4304620133998951|1.57|429.0|2|1|sense	L1ME4a_dup15683|chr7:135159667-135159953:+|1.2796223879496305|0.4304620133998951|1.57|429.0|2|1|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	532.7891235351562	2	533.297319	1064.58008	-1.5147	-0.00080777	-1.477	-0.00078767	-2.9917	-0.0015954	533.294980577901	104.75	1.1881	104.18	103.87	105.06	-0.57639					44	23	5	0	0	0	0.027456	1	9715	9715		30.504	0	1	166190			38014	14623	31353	31377	41371	41371					0.05037795699399794
MIHRDVKAGN	10	Unmodified	_MIHRDVKAGN_					0	0	0		ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;TAOK2|p.N256Rfs*30|1|0.06|ENSG00000149930|chr16:29981875-29981876|-/GAGGTCTGCCTAAGCTCAGTGCTGTC|frameshift_variant;nc|ENSG00000149930|Q9UL54-2|TAOK2	ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-2|TAOK2	nc|ENSG00000149930|Q9UL54-2|TAOK2	MULTI-SECPEP	OvCa9_classI_Rep3	3	569.8345947265625	2	570.800757	1139.58696	-0.57876	-0.00033036	-3.3646	-0.0019205	-3.9434	-0.0022509	570.7988431983996	99.155	1.0835	97.47	97.113	98.196	-1.685					30	20	3	0	0	0	0.026802	1	6736	6736		19.997	0	1	59426			38015	5493;15088	31354	31378	41372	41372					0.022751085799654902
MIHYHVSSI	9	Unmodified	_MIHYHVSSI_					0	0	0			REV__ENST00000422447.7_1_11:18429066-18429312:+|nuORF	REV__ENST00000422447.7_1_11:18429066-18429312:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7959594726562	2	543.773677	1085.5328	1.7832	0.00096964	3.4135	0.0018562	5.1966	0.0028258	543.7754978999146	107.29	0.1273	107.29	107.19	107.31	0					4	2	2	0	0	0	0.027449	1	12088	12088		40.573	0	1	118530	+		38016	25621	31355	31379	41373	41373					-0.006544835715885711
MIICSLCFN	9	Unmodified	_MIICSLCFN_					0	0	0			REV__nc|ENSG00000183439|Q5EBN2|TRIM61	REV__nc|ENSG00000183439|Q5EBN2|TRIM61	MULTI-MSMS	OvCa99_classI_Rep5	1	522.2393188476562	2	522.239766	1042.46498	1.4766	0.00077113	-2.401	-0.0012539	-0.92439	-0.00048275	522.2383501987471	128.65	0.51254	128.65	128.37	128.88	0					22	10	3	0	0	0	0.29717	1	14912	14912		63.306	4.5243	1	181840	+		38017	22361	31356	31380	41374	41374					-0.054553928182485834
MIIELLARA	9	Unmodified	_MIIELLARA_					0	0	0			REV__ENST00000469942.1_1_4:100851605-100867728:-|nuORF	REV__ENST00000469942.1_1_4:100851605-100867728:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	515.3108520507812	2	515.309895	1028.60524	1.9761	0.0010183	0.63371	0.00032656	2.6098	0.0013448	515.3100818812085	95.689	1.3503	95.689	94.732	96.082	0					86	31	3	0	0	0	0.21231	1	10471	10471		74.255	4.6274	1	1699100	+		38018	20923	31357	31381	41375	41375					0.0920785050197992
MIIFNLSSYN	10	Unmodified	_MIIFNLSSYN_					0	0	0		ENSG00000181616|ENST00000322653|OR52H1	ENSG00000181616|ENST00000322653|OR52H1	ENSG00000181616|ENST00000322653|OR52H1	MULTI-MSMS	OvCa99_classI_Rep5	1	601.2927856445312	2	601.299724	1200.5849	0.69122	0.00041563	-2.7311	-0.0016422	-2.0399	-0.0012266	601.29775720328	103.34	1.0032	103.34	102.93	103.94	0					60	23	4	0	0	0	0.50999	1	11630	11630		52.937	6.9645	1	3149900			38019	7938	31358	31382	41376	41376					-0.007373649484861744
MIIFTLLFIFL	11	Unmodified	_MIIFTLLFIFL_					0	0	0		tr|A0A553SQM3|A0A553SQM3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07950PE=4SV=1	tr|A0A553SQM3|A0A553SQM3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07950PE=4SV=1	tr|A0A553SQM3|A0A553SQM3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07950PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	457.6082763671875	3	457.610061	1369.80835	-6.2055	-0.0028397	2.0036	0.00091686	-4.202	-0.0019229	457.6108688134911	157.03	3.4081	155.86	154.91	158.32	-1.1707					147	80	2	0	0	0	0.72507	1	13581	13581		14.694	1.1857	1	68588			38020	34178	31359	31383	41377	41377					0.13824155503721158
MIIFTQEA	8	Unmodified	_MIIFTQEA_					0	0	0			REV__nc|ENSG00000008226|Q9Y238-2|DLEC1	REV__nc|ENSG00000008226|Q9Y238-2|DLEC1	MULTI-MSMS	OvCa99_classI_Rep5	1	476.746337890625	2	476.744053	951.473554	0.44533	0.00021231	2.6867	0.0012809	3.132	0.0014932	476.7451931722086	46.043	0.70182	46.043	45.8	46.501	0					44	15	4	0	0	0	0.39692	1	3241	3241		88.643	11.869	1	2971200	+		38021	16447	31360	31384	41378	41378					-0.004123795857935875
MIIKTGAF	8	Unmodified	_MIIKTGAF_					0	0	0			REV__tr|A0A553SGA6|A0A553SGA6_NIACIFormate/nitritetransporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10440PE=3SV=1	REV__tr|A0A553SGA6|A0A553SGA6_NIACIFormate/nitritetransporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10440PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	440.7495422363281	2	440.751682	879.48881	0.42967	0.00018938	-3.8995	-0.0017187	-3.4698	-0.0015293	440.74970569041864	114.46	1.7862	113.07	112.43	114.22	-1.3977					80	34	3	0	0	0	0.67745	1	10650	10650		47.916	15.961	1	83643	+		38022	29678	31361	31385	41379	41379					0.04424532002065007
MIIKTGAF	8	Unmodified	_MIIKTGAF_					0	0	0			REV__tr|A0A553SGA6|A0A553SGA6_NIACIFormate/nitritetransporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10440PE=3SV=1	REV__tr|A0A553SGA6|A0A553SGA6_NIACIFormate/nitritetransporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10440PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	440.751682	879.48881	1.7292	0.00076213	-5.3322	-0.0023502	-3.603	-0.001588	440.74915568186515	113.47	1.7767	113.36	112.48	114.26	-0.11777	0.22057	-0.00068547	NaN	47.916	73	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59025	+		38023	29678	31361	31385							0.04424532002065007
MIIKTGAF	8	Unmodified	_MIIKTGAF_					0	0	0			REV__tr|A0A553SGA6|A0A553SGA6_NIACIFormate/nitritetransporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10440PE=3SV=1	REV__tr|A0A553SGA6|A0A553SGA6_NIACIFormate/nitritetransporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10440PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	440.751682	879.48881	0.62294	0.00027456	-3.9564	-0.0017438	-3.3335	-0.0014693	440.74968354826063	114.04	1.7251	112.98	112.32	114.04	-1.055	-0.15177	0.00052723	NaN	47.916	80	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86731	+		38024	29678	31361	31385							0.04424532002065007
MIIKWEPL	8	Oxidation (M)	_M(Oxidation (M))IIKWEPL_		M(1)IIKWEPL		M(66)IIKWEPL	0	0	1		nc|ENSG00000134121|O00533|CHL1;ENSG00000134121|ENST00000256509|CHL1	nc|ENSG00000134121|O00533|CHL1	nc|ENSG00000134121|O00533|CHL1	MULTI-MSMS	OvCa9_classI_Rep2	2	523.290771484375	2	523.291171	1044.56779	-1.1613	-0.00060769	3.5353	0.00185	2.374	0.0012423	523.2928541600112	141.46	1.238	141.24	140.92	142.16	-0.22697					55	24	3	0	0	0	0.59148	1	14166	14166		65.803	9.0821	1	64496			38025	4262	31362	31386	41380	41380		137			0.047287592363318254
MIILIDHLL	9	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))IILIDHLL_		M(1)IILIDHLL		M(52)IILIDHLL	1	0	1		ENST00000520196.5_1_8:17581327-17581649:-|nuORF	ENST00000520196.5_1_8:17581327-17581649:-|nuORF	ENST00000520196.5_1_8:17581327-17581649:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	569.8328247070312	2	569.83066	1137.64677	-0.19367	-0.00011036	2.8715	0.0016363	2.6778	0.0015259	569.8320864863927	94.043	0.81376	91.536	91.257	92.071	-2.5072					36	16	3	0	0	0	0.39645	1	8232	8232		52.299	6.3269	1	189110			38026	13099	31363	31387	41381	41381		347			0.08344986470638105
MIILMIPIA	9	Oxidation (M)	_MIILM(Oxidation (M))IPIA_		MIILM(1)IPIA		M(-43)IILM(43)IPIA	0	0	1		nc|ENSG00000291104|Q96KV6|BTN2A3P;ENST00000463944.1_1_6:26426426-26428241:+|nuORF	nc|ENSG00000291104|Q96KV6|BTN2A3P	nc|ENSG00000291104|Q96KV6|BTN2A3P	MULTI-MSMS	OvCa99_classI_Rep5	1	515.8082275390625	2	515.805599	1029.59665	2.461	0.0012694	0.23366	0.00012052	2.6946	0.0013899	515.8055316697793	90.33	0.55534	90.33	90.101	90.656	0					35	13	3	0	0	0	0.22187	1	9670	9670		72.62	12.216	2	3602600			38027	15400	31364	31388	41382	41382		379			0.08303160541117904
MIKAWQVPDV	10	Unmodified	_MIKAWQVPDV_					0	0	0		ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.2890625	2	593.818084	1185.62162	1.4399	0.00085505	-3.81	-0.0022624	-2.37	-0.0014074	593.8162551343225	83.462	1.2277	83.462	82.992	84.22	0					59	28	3	0	0	0	0.026653	1	8660	8660		58.23	10.573	1	657250			38028	6618	31365	31389	41383	41383					0.03622931668041929
MIKAWQVPDV	10	Unmodified	_MIKAWQVPDV_					0	0	0		ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	593.818084	1185.62162	-2.0511	-0.001218	-9.1645	-0.005442	-11.216	-0.00666	593.8134466448172	85.291	0.84016	83.8	83.653	84.493	-1.4906	0.09294	-0.0032858	NaN	58.23	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42894			38029	6618	31365	31389							0.03622931668041929
MIKAWQVPDV	10	Unmodified	_MIKAWQVPDV_					0	0	0		ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	ENSG00000165943|ENST00000298894|MOAP1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	593.818084	1185.62162	-1.0389	-0.00061689	-7.8183	-0.0046427	-8.8572	-0.0052596	593.8134000671209	86.08	0.60136	83.86	83.735	84.337	-2.2204	0.15245	-0.0016871	NaN	58.23	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85526			38030	6618	31365	31389							0.03622931668041929
MIKILRDKI	9	Unmodified	_MIKILRDKI_					0	0	0			REV__ENST00000541541.5_1_12:31862005-31881942:-|nuORF	REV__ENST00000541541.5_1_12:31862005-31881942:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	565.3626708984375	2	565.359919	1128.70529	1.1665	0.00065949	4.4697	0.002527	5.6362	0.0031865	565.3622496510778	122.79	1.6628	121.77	121.48	123.14	-1.0286					74	31	4	0	0	0	0.3249	1	9462	9462		60.118	3.3972	1	327540	+		38031	20253	31366	31390	41384	41384					0.1460808783574521
MIKIRTLLF	9	Unmodified	_MIKIRTLLF_					0	0	0		ENST00000565979.5_1_18:4264838-4293450:+|nuORF	ENST00000565979.5_1_18:4264838-4293450:+|nuORF	ENST00000565979.5_1_18:4264838-4293450:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	567.8574829101562	2	567.857012	1133.69947	0.94009	0.00053384	-1.7309	-0.0009829	-0.7908	-0.00044906	567.855944524341	140.04	3.3684	140.04	139.61	142.98	0					163	68	5	0	0	0	0.53483	1	16467	16467		39.253	0.44669	1	2052200			38032	13835	31367	31391	41385	41385					0.13796989324077913
MIKISARKLAC	11	Unmodified	_MIKISARKLAC_					0	0	0			REV__PAXIP1|p.V161M|1|0.41|ENSG00000157212|chr7:154976289-154976289|C/T|missense_variant	REV__PAXIP1|p.V161M|1|0.41|ENSG00000157212|chr7:154976289-154976289|C/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	618.3176879882812	2	617.362136	1232.70972	1.5661	0.00096682	3.5422	0.0021868	5.1082	0.0031536	617.3645215041623	126.88	0.81717	126.88	126.32	127.14	0					25	17	3	0	0	0	0.025806	1	14631	14631		24.519	0	1	140920	+		38033	29281	31368	31392	41386	41386					0.10267228987049748
MIKKLQNMLE	10	Oxidation (M)	_MIKKLQNM(Oxidation (M))LE_		MIKKLQNM(1)LE		M(-85)IKKLQNM(85)LE	0	0	1		GRIPAP1|p.N792I|1|0.25|ENSG00000068400|chrX:48975213-48975213|T/A|missense_variant	GRIPAP1|p.N792I|1|0.25|ENSG00000068400|chrX:48975213-48975213|T/A|missense_variant	GRIPAP1|p.N792I|1|0.25|ENSG00000068400|chrX:48975213-48975213|T/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	632.347412109375	2	632.343609	1262.67266	-0.43212	-0.00027325	0.65163	0.00041205	0.2195	0.0001388	632.3439392672452	100.58	1.7995	98.97	98.802	100.6	-1.6053					74	34	3	0	0	0	0.24425	1	6841	6841		87.696	10.379	2	286850			38034	14353	31369	31393	41387	41387		358			0.0518351265061483
MIKLKQQLK	9	Unmodified	_MIKLKQQLK_					0	0	0			REV__CTAGE9|p.M608Ifs*4|1|0.64|ENSG00000236761|chr6:131709175-131709194|ATTGCCCTGGTGGAGGAAAC/-|frameshift_variant	REV__CTAGE9|p.M608Ifs*4|1|0.64|ENSG00000236761|chr6:131709175-131709194|ATTGCCCTGGTGGAGGAAAC/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.36376953125	2	565.359919	1128.70529	1.1007	0.00062228	4.2546	0.0024054	5.3553	0.0030277	565.3621660553404	123.19	1.698	121.83	121.51	123.2	-1.3666					79	33	4	0	0	0	0.40667	1	11652	11652		51.335	5.3632	1	287990	+		38035	16248	31370	31394	41388	41388					0.1460808783574521
MIKLSNSLE	9	Unmodified	_MIKLSNSLE_					0	0	0			REV__tr|A0A7D6ZZS2|A0A7D6ZZS2_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07315PE=4SV=1	REV__tr|A0A7D6ZZS2|A0A7D6ZZS2_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07315PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.3257446289062	2	517.781167	1033.54778	-1.0375	-0.00053718	1.1108	0.00057513	0.073285	3.7946E-05	517.7818099947933	70.945	0.82294	67.489	67.251	68.074	-3.4563					28	16	2	0	0	0	0.027441	1	5384	5384		49.442	11.63	1	39073	+		38036	32419	31371	31395	41389	41389					0.032349635057244086
MIKLSNSLE	9	Unmodified	_MIKLSNSLE_					0	0	0			REV__tr|A0A7D6ZZS2|A0A7D6ZZS2_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07315PE=4SV=1	REV__tr|A0A7D6ZZS2|A0A7D6ZZS2_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07315PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	517.781167	1033.54778	-0.81824	-0.00042367	-1.2155	-0.00062936	-2.0337	-0.001053	517.7806573846774	67.797	0.54864	67.797	67.566	68.114	0	0.19612	-0.0011487	NaN	40.778	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250520	+		38037	32419	31371	31395							0.032349635057244086
MIKNRLARF	9	Unmodified	_MIKNRLARF_					0	0	0			REV__tr|A0A553SPN2|A0A553SPN2_NIACIDabbfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_26705PE=4SV=1	REV__tr|A0A553SPN2|A0A553SPN2_NIACIDabbfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_26705PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	574.8381958007812	2	574.839685	1147.66482	-1.4106	-0.00081085	-3.2856	-0.0018887	-4.6962	-0.0026996	574.8376960382861	90.862	4.6623	88.781	88.464	93.126	-2.0805					220	93	6	0	0	0	0.40667	1	5706	5706		51.335	1.8939	1	4849000	+		38038	30552	31372	31396	41390	41390					0.09689166235989433
MIKQAWYF	8	Unmodified	_MIKQAWYF_					0	0	0			REV__tr|A0A553SLE6|A0A553SLE6_NIACICitratelyasesubunitbetaOS=NialliacirculansOX=1397GN=CEQ21_20495PE=4SV=1	REV__tr|A0A553SLE6|A0A553SLE6_NIACICitratelyasesubunitbetaOS=NialliacirculansOX=1397GN=CEQ21_20495PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.3010864257812	2	543.775688	1085.53682	-1.292	-0.00070254	1.2174	0.000662	-0.074541	-4.0533E-05	543.7785516177734	93.246	0.49873	90.739	90.513	91.012	-2.5072					10	9	2	0	0	0	0.028476	1	8143	8143		26.796	0	1	26737	+		38039	30217	31373	31397	41391	41391					-0.0025239407791559643
MIKSFITTLVH	11	Unmodified	_MIKSFITTLVH_					0	0	0		Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|75|2|sense	Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|75|2|sense	Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|75|2|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	645.3736572265625	2	645.367941	1288.72133	0.14887	9.6079E-05	2.5278	0.0016313	2.6766	0.0017274	645.3693996208364	90.956	1.8331	88.381	88.007	89.84	-2.575					104	35	5	0	0	0	0.64273	1	7863	7863		40.778	7.9657	1	395330			38040	14386	31374	31398	41392	41392					0.08851749281984667
MIKSFITTLVH	11	Unmodified	_MIKSFITTLVH_					0	0	0		Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|75|2|sense	Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|75|2|sense	Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|75|2|sense	MULTI-MATCH	OvCa9_classI_Rep3	3		2	645.367941	1288.72133	-0.84004	-0.00054213	3.6791	0.0023743	2.839	0.0018322	645.370179324597	90.502	1.675	88.421	88.108	89.783	-2.0805	0.019999	0.00057275	NaN	40.778	97	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	569270			38041	14386	31374	31398							0.08851749281984667
MIKVAAPR	8	Unmodified	_MIKVAAPR_					0	0	0		nc|ENSG00000240303|Q709F0-3|ACAD11;nc|ENSG00000240303|Q709F0-2|ACAD11;ENSG00000240303|ENST00000264990|ACAD11;ENST00000496418.5_1_3:132277817-132297733:-|nuORF	nc|ENSG00000240303|Q709F0-3|ACAD11	nc|ENSG00000240303|Q709F0-3|ACAD11	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.2853088378906	2	443.270573	884.526593	0.0063927	2.8337E-06	-3.2118	-0.0014237	-3.2054	-0.0014209	443.2691122999542	83.645	0.58437	80.982	80.73	81.314	-2.6629					18	11	2	0	0	0	0.028476	1	6969	6969		24.203	9.5387	1	16979			38042	9337	31375	31399	41393	41393					0.07971042987526289
MIKVFCLIP	9	Unmodified	_MIKVFCLIP_					0	0	0			REV__ENST00000498824.4_1_13:41507071-41507173:-|nuORF	REV__ENST00000498824.4_1_13:41507071-41507173:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	532.3031005859375	2	532.305767	1062.59698	0.77508	0.00041258	-2.0718	-0.0011028	-1.2967	-0.00069026	532.304497197436	119.19	1.0896	118.16	117.88	118.97	-1.0271					49	21	4	0	0	0	0.39645	1	9032	9032		52.299	2.8576	1	129730	+		38043	26803	31376	31400	41394	41394					0.06818580260983254
MILAHFNLR	9	Unmodified	_MILAHFNLR_					0	0	0		chr14:24174555-24175543|88|40.78|0.62|6.03|+|2|TE_info:AluSx1,AluSx1_dup81828,Alu,SINE,donor,-,24174285,24174555|None,REC8|1	chr14:24174555-24175543|88|40.78|0.62|6.03|+|2|TE_info:AluSx1,AluSx1_dup81828,Alu,SINE,donor,-,24174285,24174555|None,REC8|1	chr14:24174555-24175543|88|40.78|0.62|6.03|+|2|TE_info:AluSx1,AluSx1_dup81828,Alu,SINE,donor,-,24174285,24174555|None,REC8|1	MULTI-MSMS	OvCa9_classI_Rep3	3	557.8102416992188	2	557.813136	1113.61172	-3.7502	-0.0020919	-0.70957	-0.00039581	-4.4598	-0.0024877	557.8126676020494	145.58	1.5914	144.61	144.29	145.88	-0.97301					90	31	4	0	0	0	0.61208	1	12242	12242		30.504	2.6214	1	788550			38044	346	31377	31401	41395	41395					0.059457884533230754
MILEPTVPIQ	10	Unmodified	_MILEPTVPIQ_					0	0	0			REV__tr|A0A7D6VQG5|A0A7D6VQG5_9CLOTXanthinedehydrogenasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02095PE=4SV=1	REV__tr|A0A7D6VQG5|A0A7D6VQG5_9CLOTXanthinedehydrogenasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02095PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.3547973632812	2	570.820292	1139.62603	-0.42429	-0.00024219	-3.5163	-0.0020072	-3.9406	-0.0022494	570.817255647456	42.689	0.34321	42.689	42.539	42.883	0					11	7	2	0	0	0	0.026464	1	2771	2771		90.37	20.742	1	38813	+		38045	31323	31378	31402	41396	41396					0.061803960909628586
MILETTLREA	10	Unmodified	_MILETTLREA_					0	0	0			REV__ENSG00000183486|ENST00000330714|MX2	REV__ENSG00000183486|ENST00000330714|MX2	MULTI-MSMS	OvCa9_classI_Rep2	2	588.8162231445312	2	588.818281	1175.62201	0.80844	0.00047603	-3.7503	-0.0022082	-2.9418	-0.0017322	588.8159508434318	128.23	0.78979	128.01	127.74	128.53	-0.22696					46	15	4	0	0	0	0.58067	1	12568	12568		44.377	1.5129	1	167000	+		38046	22364	31379	31403	41397	41397					0.04122306597264469
MILFCIIGT	9	Carbamidomethyl (C)	_MILFC(Carbamidomethyl (C))IIGT_	MILFC(1)IIGT		MILFC(42)IIGT		0	1	0			REV__tr|A0A553SLU7|A0A553SLU7_NIACIAminoacidpermeaseOS=NialliacirculansOX=1397GN=CEQ21_21345PE=4SV=1	REV__tr|A0A553SLU7|A0A553SLU7_NIACIAminoacidpermeaseOS=NialliacirculansOX=1397GN=CEQ21_21345PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	534.2848510742188	2	534.285031	1066.55551	-2.0798	-0.0011112	0.20095	0.00010736	-1.8788	-0.0010038	534.2851091761327	143.26	1.286	142.27	141.94	143.23	-0.9903					60	25	3	0	0	0	0.50066	1	11899	11899		42.474	7.2737	1	116190	+		38047	30266	31380	31404	41398	41398	364				0.02489399501655498
MILFHGNKL	9	Unmodified	_MILFHGNKL_					0	0	0		ENST00000334598.11_2_18:33048478-33048559:-|nuORF	ENST00000334598.11_2_18:33048478-33048559:-|nuORF	ENST00000334598.11_2_18:33048478-33048559:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.275390625	2	536.802237	1071.58992	2.6512	0.0014231	1.1854	0.0006363	3.8365	0.0020594	536.8028012248843	99.301	0.85959	99.301	99.036	99.896	0					14	10	2	0	0	0	0.027462	1	10946	10946		30.504	0	1	483920			38048	10489	31381	31405	41399	41399					0.05698983704769489
MILFLEQRA	9	Unmodified	_MILFLEQRA_					0	0	0			REV__ENSG00000148795|ENST00000369887|CYP17A1	REV__ENSG00000148795|ENST00000369887|CYP17A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.8289794921875	2	560.812802	1119.61105	0.39456	0.00022128	-3.8159	-0.00214	-3.4213	-0.0019187	560.8115503943349	71.251	0.51331	71.251	70.994	71.507	0					18	12	2	0	0	0	0.027448	1	6842	6842		35.618	7.736	1	170090	+		38049	20126	31382	31406	41400	41400					0.05602949013655234
MILIFLFV	8	Unmodified	_MILIFLFV_					0	0	0			REV__tr|A0A7D7A3K2|A0A7D7A3K2_9CLOTDUF4446familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23950PE=4SV=1	REV__tr|A0A7D7A3K2|A0A7D7A3K2_9CLOTDUF4446familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23950PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.7992248535156	2	498.30355	994.592547	-0.2905	-0.00014476	-0.78109	-0.00038922	-1.0716	-0.00053398	498.30374363824416	71.29	0.43918	71.29	71.068	71.507	0					14	10	2	0	0	0	0.028476	1	6912	6912		24.504	7.799	1	821830	+		38050	32588	31383	31407	41401	41401					0.09503439109721512
MILIIGMLLV	10	Unmodified	_MILIIGMLLV_					0	0	0			REV__tr|A0A553ST48|A0A553ST48_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04300PE=4SV=1	REV__tr|A0A553ST48|A0A553ST48_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04300PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.3509521484375	2	558.350174	1114.6858	0.95616	0.00053387	-1.2327	-0.00068828	-0.27653	-0.0001544	558.3495032263	83.609	2.0584	80.946	80.486	82.544	-2.6629					122	42	4	0	0	0	0.49566	1	7019	7019		54.765	1.4132	1	1274500	+		38051	30917	31384	31408	41402	41402					0.1330399550065522
MILKTMKV	8	Oxidation (M)	_MILKTM(Oxidation (M))KV_		MILKTM(1)KV		M(-69)ILKTM(69)KV	0	0	1		ENST00000371176.6_2_10:98006755-98006785:-|nuORF	ENST00000371176.6_2_10:98006755-98006785:-|nuORF	ENST00000371176.6_2_10:98006755-98006785:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	490.28546142578125	2	490.287574	978.560595	2.0472	0.0010037	0.70962	0.00034792	2.7568	0.0013516	490.28769849703957	76.286	1.5142	76.286	76.115	77.629	0					53	36	3	0	0	0	0.40148	1	7627	7627		87.754	7.8151	2	1482000			38052	10949	31385	31409	41403	41403		311			0.07045703364281053
MILLVCFVM	9	Unmodified	_MILLVCFVM_					0	0	0			REV__ENSG00000145623|ENST00000274276|OSMR	REV__ENSG00000145623|ENST00000274276|OSMR	MULTI-MSMS	OvCa99_classI_Rep5	1	534.7862548828125	2	534.786352	1067.55815	1.1383	0.00060877	-3.3365	-0.0017843	-2.1981	-0.0011755	534.7843882972728	155.3	1.3659	155.3	154.78	156.14	0					57	26	3	0	0	0	0.32242	1	18194	18194		60.404	7.0522	1	203560	+		38053	19971	31386	31410	41404	41404					0.027075316349510103
MILNLSFCD	9	Unmodified	_MILNLSFCD_					0	0	0		ENSG00000119737|ENST00000394705|GPR75	ENSG00000119737|ENST00000394705|GPR75	ENSG00000119737|ENST00000394705|GPR75	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.7772827148438	2	528.248646	1054.48274	2.2279	0.0011769	0.36521	0.00019292	2.5931	0.0013698	528.2485963030337	95.011	0.25562	95.011	94.819	95.075	0					8	5	2	0	0	0	0.027426	1	10356	10356		66.429	32.257	1	125970			38054	3392	31387	31411	41405	41405					-0.04232354291775664
MILQRISP	8	Unmodified	_MILQRISP_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-4|CNOT1	REV__nc|ENSG00000125107|A5YKK6-4|CNOT1	MULTI-MSMS	OvCa9_classI_Rep2	2	479.2795715332031	2	479.281137	956.547722	-0.31076	-0.00014894	-3.1843	-0.0015262	-3.4951	-0.0016751	479.2797349881233	95.486	3.0134	94.457	93.134	96.147	-1.0281					131	60	4	0	0	0	0.39692	3	8573	8573;8589;8613		88.643	17.265	1	2203400	+		38055	18713	31388	31412	41406;41407;41408	41406					0.0677100829640267
MILQRISP	8	Unmodified	_MILQRISP_					0	0	0			REV__nc|ENSG00000125107|A5YKK6-4|CNOT1	REV__nc|ENSG00000125107|A5YKK6-4|CNOT1	MULTI-MSMS	OvCa9_classI_Rep3	3	479.2797546386719	2	479.281137	956.547722	-0.4527	-0.00021697	-3.0726	-0.0014726	-3.5253	-0.0016896	479.2796688729981	96.325	1.9148	94.496	94.027	95.941	-1.8286					106	37	4	0	0	0	0.33245	6	6341	6335;6341;6353;6359;6365;6386		101.21	12.569	1	3171600	+		38056	18713	31388	31412	41409;41410;41411;41412;41413;41414	41410					0.0677100829640267
MILRIDLT	8	Unmodified	_MILRIDLT_					0	0	0		ENSG00000090402|ENST00000264382|SI	ENSG00000090402|ENST00000264382|SI	ENSG00000090402|ENST00000264382|SI	MULTI-MSMS	OvCa9_classI_Rep3	3	487.7861328125	2	487.788795	973.563038	-0.68011	-0.00033175	-3.9726	-0.0019378	-4.6527	-0.0022695	487.78717268319804	102.91	1.8832	101.39	100.69	102.57	-1.5211					99	35	5	0	0	0	0.64026	1	7117	7117		55.504	2.1528	1	721970			38057	1838	31389	31413	41415	41415					0.0751987509358969
MILRPRDLILS	11	Unmodified	_MILRPRDLILS_					0	0	0		ENST00000461839.1_1_19:55155414-55159608:+|nuORF	ENST00000461839.1_1_19:55155414-55159608:+|nuORF	ENST00000461839.1_1_19:55155414-55159608:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	442.9335021972656	3	442.935719	1325.78533	-4.7977	-0.0021251	-0.94573	-0.0004189	-5.7435	-0.002544	442.93481994922325	155.81	1.5275	154.32	153.17	154.69	-1.4911					71	41	2	0	0	0	0.72516	1	15386	15386		13.508	0.55046	1	34091			38058	12190	31390	31414	41416	41416					0.13546529438963262
MILRPRDLILS	11	Unmodified	_MILRPRDLILS_					0	0	0		ENST00000461839.1_1_19:55155414-55159608:+|nuORF	ENST00000461839.1_1_19:55155414-55159608:+|nuORF	ENST00000461839.1_1_19:55155414-55159608:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		3	442.935719	1325.78533	-5.4424	-0.0024106	-0.55221	-0.00024459	-5.9946	-0.0026552	442.9351025580405	155.27	2.2343	154.19	153.21	155.44	-1.073	-0.062063	0.00018738	NaN	13.508	85	55	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33870			38059	12190	31390	31414							0.13546529438963262
MILTKDILK	9	Unmodified	_MILTKDILK_					0	0	0		nc|ENSG00000187950|Q7RTY7|OVCH1	nc|ENSG00000187950|Q7RTY7|OVCH1	nc|ENSG00000187950|Q7RTY7|OVCH1	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.8333129882812	2	537.833203	1073.65185	-1.0759	-0.00057866	0.28331	0.00015237	-0.7926	-0.00042629	537.8332038010457	94.419	0.94319	91.951	91.618	92.561	-2.4685					34	18	2	0	0	0	0.14998	1	8279	8279		84.916	5.2029	1	282080			38060	15227	31391	31415	41417	41417					0.11797290333242927
MILVRKSL	8	Unmodified	_MILVRKSL_					0	0	0			REV__nc|ENSG00000058804|Q9BTX1-6|NDC1	REV__nc|ENSG00000058804|Q9BTX1-6|NDC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2934265136719	2	480.307155	958.599758	2.5689	0.0012339	1.1882	0.0005707	3.7571	0.0018046	480.3074965610451	89.103	0.31233	89.103	88.922	89.235	0					9	7	2	0	0	0	0.028476	1	9492	9492		9.4706	0.64823	1	322130	+		38061	16731	31392	31416	41418	41418					0.11880171710163268
MILWMLLP	8	Unmodified	_MILWMLLP_					0	0	0		nc|ENSG00000196290|Q9GZT8-3|NIF3L1	nc|ENSG00000196290|Q9GZT8-3|NIF3L1	nc|ENSG00000196290|Q9GZT8-3|NIF3L1	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.2590637207031	2	508.78721	1015.55987	1.8199	0.00092594	-4.4557	-0.002267	-2.6359	-0.0013411	508.78488215603255	77.823	0.54475	77.823	77.629	78.174	0					19	12	2	0	0	0	0.028476	1	7892	7892		67.327	1.524	1	575300			38062	15241	31393	31417	41419	41419					0.052709087152265965
MILWMLLP	8	Unmodified	_MILWMLLP_					0	0	0		nc|ENSG00000196290|Q9GZT8-3|NIF3L1	nc|ENSG00000196290|Q9GZT8-3|NIF3L1	nc|ENSG00000196290|Q9GZT8-3|NIF3L1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	508.78721	1015.55987	-0.24856	-0.00012646	0.19348	9.8439E-05	-0.055079	-2.8024E-05	508.78676428771416	80.429	0.35666	78.106	77.929	78.286	-2.3226	0.1416	0.0039928	NaN	67.327	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15285			38063	15241	31393	31417							0.052709087152265965
MILYPYHF	8	Unmodified	_MILYPYHF_					0	0	0		tr|A0A553SL53|A0A553SL53_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20005PE=4SV=1	tr|A0A553SL53|A0A553SL53_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20005PE=4SV=1	tr|A0A553SL53|A0A553SL53_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20005PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.9974975585938	2	542.270238	1082.52592	0.0086354	4.6827E-06	4.4433	0.0024095	4.4519	0.0024141	542.2724930846169	92.256	0.84092	91.069	90.743	91.584	-1.1869					28	15	2	0	0	0	0.028476	1	8215	8215		54.895	5.6838	1	22522			38064	33685	31394	31418	41420	41420					-0.012037964521823596
MILYPYHF	8	Unmodified	_MILYPYHF_					0	0	0		tr|A0A553SL53|A0A553SL53_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20005PE=4SV=1	tr|A0A553SL53|A0A553SL53_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20005PE=4SV=1	tr|A0A553SL53|A0A553SL53_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20005PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	542.270238	1082.52592	-1.1136	-0.00060385	4.8172	0.0026122	3.7036	0.0020084	542.2732307151396	92.983	0.73257	91.021	90.744	91.476	-1.9617	-0.019248	-0.0001243	NaN	54.895	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52946			38065	33685	31394	31418							-0.012037964521823596
MILYPYHF	8	Unmodified	_MILYPYHF_					0	0	0		tr|A0A553SL53|A0A553SL53_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20005PE=4SV=1	tr|A0A553SL53|A0A553SL53_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20005PE=4SV=1	tr|A0A553SL53|A0A553SL53_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20005PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	542.270238	1082.52592	-1.269	-0.00068813	6.0175	0.0032631	4.7485	0.002575	542.273602484873	93.539	0.49395	91.032	90.763	91.257	-2.5072	-0.0091083	0.0011775	NaN	54.895	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65679			38066	33685	31394	31418							-0.012037964521823596
MIMCAFLVQ	9	Unmodified	_MIMCAFLVQ_					0	0	0		tr|A0A553SFV3|A0A553SFV3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09530PE=4SV=1	tr|A0A553SFV3|A0A553SFV3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09530PE=4SV=1	tr|A0A553SFV3|A0A553SFV3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09530PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.2398681640625	2	528.257959	1054.50137	-1.1471	-0.00060596	3.6694	0.0019384	2.5223	0.0013324	528.2599941611961	103.49	0.73073	101.37	101.12	101.85	-2.1192					18	13	2	0	0	0	0.027408	1	9359	9359		57.811	3.0466	1	17506			38067	33081	31395	31419	41421	41421					-0.023705159215751337
MIMCAFLVQ	9	Unmodified	_MIMCAFLVQ_					0	0	0		tr|A0A553SFV3|A0A553SFV3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09530PE=4SV=1	tr|A0A553SFV3|A0A553SFV3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09530PE=4SV=1	tr|A0A553SFV3|A0A553SFV3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09530PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	528.257959	1054.50137	-0.67714	-0.00035771	3.1484	0.0016631	2.4712	0.0013054	528.2594900516585	102.78	0.83575	101.25	100.95	101.78	-1.5211	-0.056409	-0.00017762	NaN	57.811	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20936			38068	33081	31395	31419							-0.023705159215751337
MIMEEVEDPIA	11	Unmodified	_MIMEEVEDPIA_					0	0	0		ENST00000522203.5_1_5:143545150-143549464:-|nuORF;ENST00000448443.6_1_5:143545112-143549464:-|nuORF	ENST00000522203.5_1_5:143545150-143549464:-|nuORF	ENST00000522203.5_1_5:143545150-143549464:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	637.8271484375	2	638.793614	1275.57268	1.111	0.00070969	-4.3236	-0.0027619	-3.2127	-0.0020522	638.7918979379656	152.68	0.6705	152.68	152.57	153.25	0					22	15	2	0	0	0	0.025853	1	17898	17898		14.865	0	1	54564			38069	12018	31396	31420	41422	41422					-0.05408769473842767
MIMLFIMF	8	Unmodified	_MIMLFIMF_					0	0	0		nc|ENSG00000103534|Q6UXY8-4|TMC5;ENST00000567478.5_1_16:19467998-19503571:+|nuORF;nc|ENSG00000103534|Q6UXY8-3|TMC5;ENSG00000103534|ENST00000542583|TMC5;nc|ENSG00000103534|Q6UXY8-2|TMC5	nc|ENSG00000103534|Q6UXY8-4|TMC5	nc|ENSG00000103534|Q6UXY8-4|TMC5	MULTI-MSMS	OvCa9_classI_Rep2	2	523.2682495117188	2	523.267796	1044.52104	0.43587	0.00022808	2.0751	0.0010858	2.5109	0.0013139	523.2687191280446	110.76	1.4312	110.62	110.19	111.62	-0.13961					94	28	4	0	0	0	0.69862	1	10451	10451		43.626	2.8479	1	245360			38070	2326	31397	31421	41423	41423					0.0005586008919635788
MIMMAMAMK	9	Unmodified	_MIMMAMAMK_					0	0	0		ENSG00000198763|ENST00000361453|MT-ND2	ENSG00000198763|ENST00000361453|MT-ND2	ENSG00000198763|ENST00000361453|MT-ND2	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8115844726562	2	529.240398	1056.46624	-0.58179	-0.00030791	4.4394	0.0023495	3.8576	0.0020416	529.7423534089137	104.7	0.59538	104.7	104.41	105	0					24	11	3	0	0	0	0.027462	1	11704	11704		25.45	10.786	1	287610			38071	8870	31398	31422	41424	41424					-0.05973218045369322
MIMMLDLE	8	Unmodified	_MIMMLDLE_					0	0	0		tr|A0A7D6ZZ75|A0A7D6ZZ75_9CLOTUPF0237proteinHZF06_05230OS=ClostridiumintestinaleOX=36845GN=HZF06_05230PE=3SV=1	tr|A0A7D6ZZ75|A0A7D6ZZ75_9CLOTUPF0237proteinHZF06_05230OS=ClostridiumintestinaleOX=36845GN=HZF06_05230PE=3SV=1	tr|A0A7D6ZZ75|A0A7D6ZZ75_9CLOTUPF0237proteinHZF06_05230OS=ClostridiumintestinaleOX=36845GN=HZF06_05230PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.2931213378906	2	498.23415	994.453747	2.6675	0.001329	4.0991	0.0020423	6.7666	0.0033714	498.23612308643516	116.03	0.82963	116.03	115.63	116.46	0					32	17	3	0	0	0	0.028476	1	13276	13276		52.299	0	1	215560			38072	35946	31399	31423	41425	41425					-0.043702149124214884
MIMQRCHD	8	Unmodified	_MIMQRCHD_					0	0	0			REV__ENST00000463426.5_1_13:113864225-113883965:+|nuORF	REV__ENST00000463426.5_1_13:113864225-113883965:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.2866821289062	2	517.222439	1032.43033	-0.23597	-0.00012205	-2.4631	-0.001274	-2.6991	-0.001396	517.2208926374899	57.539	1.0667	54.195	53.832	54.899	-3.3449					33	20	3	0	0	0	0.028476	1	3819	3819		50.025	25.822	1	66316	+		38073	19637	31400	31424	41426	41426					-0.08459215906373174
MINIKKLNT	9	Unmodified	_MINIKKLNT_					0	0	0			REV__ENSG00000176731|ENST00000619594|RBIS	REV__ENSG00000176731|ENST00000619594|RBIS	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.2913208007812	2	537.820627	1073.6267	0.22447	0.00012072	-1.391	-0.00074812	-1.1666	-0.0006274	537.8192902814443	129.67	0.14798	129.44	129.32	129.46	-0.22696					4	2	2	0	0	0	0.027462	1	12721	12721		40.778	0	1	9214	+		38074	21966	31401	31425	41427	41427					0.09283235530688216
MINNFRQVQ	9	Unmodified	_MINNFRQVQ_					0	0	0		nc|ENSG00000074410|O43570-2|CA12;ENSG00000074410|ENST00000178638|CA12	nc|ENSG00000074410|O43570-2|CA12	nc|ENSG00000074410|O43570-2|CA12	MULTI-SECPEP	OvCa9_classI_Rep4_	4	574.30810546875	2	575.295307	1148.57606	-1.7924	-0.0010312	2.3384	0.0013453	0.54604	0.00031414	575.2959713351669	127.14	0.84829	125.71	125.49	126.34	-1.4357					34	16	3	0	0	0	0.027462	1	12184	12184		44.117	6.3053	1	25214			38075	1512	31402	31426	41428	41428					0.007717062056826762
MINTMLKDL	9	Unmodified	_MINTMLKDL_					0	0	0		ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.2877197265625	2	539.785395	1077.55624	-0.049296	-2.6609E-05	3.8614	0.0020843	3.8121	0.0020577	539.7875283135534	96.586	2.2733	94.16	93.355	95.628	-2.4256					90	44	4	0	0	0	0.38807	1	8523	8523		53.089	1.7535	1	685970			38076	2903	31403	31427	41429	41429					0.020561941507139636
MIPAFRTF	8	Unmodified	_MIPAFRTF_					0	0	0		ENSG00000203734|ENST00000541398|ECT2L	ENSG00000203734|ENST00000541398|ECT2L	ENSG00000203734|ENST00000541398|ECT2L	MULTI-SECPEP	OvCa9_classI_Rep3	3	491.8039855957031	2	491.762581	981.510608	-0.53418	-0.00026269	3.1869	0.0015672	2.6527	0.0013045	491.76420257973194	98.579	1.3383	96.842	96.336	97.675	-1.7368					41	25	2	0	0	0	0.028476	1	6536	6536		60.294	17.43	1	50073			38077	8929	31404	31428	41430	41430					0.019113367506406576
MIPIHKFNN	9	Unmodified	_MIPIHKFNN_					0	0	0			REV__tr|A0A7D6W0D6|A0A7D6W0D6_9CLOTDelta-aminolevulinicaciddehydrataseOS=ClostridiumintestinaleOX=36845GN=hemBPE=3SV=1	REV__tr|A0A7D6W0D6|A0A7D6W0D6_9CLOTDelta-aminolevulinicaciddehydrataseOS=ClostridiumintestinaleOX=36845GN=hemBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.3007202148438	2	557.297319	1112.58008	4.4165	0.0024613	0.78503	0.0004375	5.2015	0.0028988	557.2975597286766	132.77	0.63521	131.27	131.05	131.68	-1.5015					17	12	2	0	0	0	0.53957	1	12789	12789		38.806	3.6054	1	14007	+		38078	31855	31405	31429	41431	41431					0.02829795699403803
MIPKAFILSFV	11	Unmodified	_MIPKAFILSFV_					0	0	0		SENP5|p.R657Lfs*27|1|0.05|ENSG00000119231|chr3:196923495-196923496|-/ACTTGAGCAGACTTGCTTCAGAGCCCATG|frameshift_variant	SENP5|p.R657Lfs*27|1|0.05|ENSG00000119231|chr3:196923495-196923496|-/ACTTGAGCAGACTTGCTTCAGAGCCCATG|frameshift_variant	SENP5|p.R657Lfs*27|1|0.05|ENSG00000119231|chr3:196923495-196923496|-/ACTTGAGCAGACTTGCTTCAGAGCCCATG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3763427734375	2	633.369952	1264.72535	-4.8824	-0.0030923	3.8437	0.0024345	-1.0386	-0.00065783	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.65947	3	13258	13020;13068;13258		39.253	10.103	1	765700			38079	32810	31406	31430	41432;41433;41434	41434					0.1035783877571248
MIPLRIQTK	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MIPLRIQTK_					1	0	0		ENST00000430328.6_1_2:152273107-152273161:+|nuORF	ENST00000430328.6_1_2:152273107-152273161:+|nuORF	ENST00000430328.6_1_2:152273107-152273161:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	571.3432006835938	2	571.341726	1140.6689	-0.014102	-8.0572E-06	2.6727	0.001527	2.6586	0.001519	571.3430044341536	42.894	1.1371	40.184	39.818	40.955	-2.7097					49	22	3	0	0	0	0.52083	1	2352	2352		40.573	13.777	1	139130			38080	11786	31407	31431	41435	41435					0.10419210939062395
MIPMQYIN	8	Unmodified	_MIPMQYIN_					0	0	0			REV__ENST00000378578.8_1_X:37699060-37699132:-|nuORF	REV__ENST00000378578.8_1_X:37699060-37699132:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	504.2969970703125	2	505.245906	1008.47726	-0.1076	-5.4362E-05	-3.0449	-0.0015384	-3.1524	-0.0015928	505.24433678203076	104.82	0.52051	103.47	103.31	103.83	-1.3482					14	9	2	0	0	0	0.028476	1	7352	7352		26.796	0	1	34694	+		38081	25146	31408	31432	41436	41436					-0.026640330835903114
MIPQKTNR	8	Unmodified	_MIPQKTNR_					0	0	0			REV__ENST00000461830.6_1_1:175958496-176012322:-|nuORF	REV__ENST00000461830.6_1_1:175958496-176012322:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.8154602050781	2	494.273844	986.533135	0.70507	0.0003485	4.1223	0.0020376	4.8274	0.0023861	494.27562804796355	111.22	0.84186	109.62	109.17	110.02	-1.6011					19	15	2	0	0	0	0.028476	1	10251	10251		17.365	3.5896	1	27905	+		38082	19823	31409	31433	41437	41437					0.039329361482373315
MIPQYIIF	8	Unmodified	_MIPQYIIF_					0	0	0		tr|A0A553SQA9|A0A553SQA9_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_22530PE=3SV=1	tr|A0A553SQA9|A0A553SQA9_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_22530PE=3SV=1	tr|A0A553SQA9|A0A553SQA9_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_22530PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	512.8115234375	2	512.780439	1023.54633	-0.59061	-0.00030285	3.3306	0.0017079	2.74	0.001405	512.7807438745627	94.049	1.9224	92.12	91.61	93.532	-1.9286					61	37	3	0	0	0	0.028476	1	6109	6109		21.702	0	1	78809			38083	34139	31410	31434	41438	41438					0.03549374207636902
MIPSLYQLL	9	Oxidation (M)	_M(Oxidation (M))IPSLYQLL_		M(1)IPSLYQLL		M(88)IPSLYQLL	0	0	1			REV__tr|A0A553SNN4|A0A553SNN4_NIACIEamAfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_24685PE=3SV=1	REV__tr|A0A553SNN4|A0A553SNN4_NIACIEamAfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_24685PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	547.3038330078125	2	547.301736	1092.58892	0.56244	0.00030782	0.2331	0.00012758	0.79554	0.0004354	547.30162768917	159.54	1.2192	159.54	159.24	160.45	0					63	24	4	0	0	0	0.13482	1	18703	18703		87.754	16.459	1	381630	+		38084	30434	31411	31435	41439	41439		666			0.04632724545194833
MIPTWQTLN	9	Unmodified	_MIPTWQTLN_					0	0	0		ENST00000435510.6_1_10:64914094-64914229:+|nuORF	ENST00000435510.6_1_10:64914094-64914229:+|nuORF	ENST00000435510.6_1_10:64914094-64914229:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	552.2823486328125	2	552.281334	1102.54812	0.82148	0.00045369	1.0773	0.00059495	1.8987	0.0010486	552.281870431291	110.23	0.98859	110.06	109.66	110.65	-0.17237					48	19	3	0	0	0	0.22621	1	10379	10379		71.877	3.2517	1	166430			38085	11861	31412	31436	41440	41440					0.0009438322558708023
MIQKTRYVLRF	11	Oxidation (M)	_M(Oxidation (M))IQKTRYVLRF_		M(1)IQKTRYVLRF		M(46)IQKTRYVLRF	0	0	1		ENST00000519132.5_1_5:178032263-178039506:-|nuORF	ENST00000519132.5_1_5:178032263-178039506:-|nuORF	ENST00000519132.5_1_5:178032263-178039506:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	490.9464416503906	3	490.946506	1469.81769	1.5031	0.00073793	-2.0639	-0.0010133	-0.56087	-0.00027536	490.9455151812638	113.75	1.1514	113.75	113.5	114.65	0					82	25	4	0	0	0	0.58642	1	12998	12998		45.908	7.194	1	6497600			38086	13082	31413	31437	41441	41441		346			0.10157316841923603
MIQPRIGAW	9	Unmodified	_MIQPRIGAW_					0	0	0			REV__nc|ENSG00000175029|P56545-3|CTBP2	REV__nc|ENSG00000175029|P56545-3|CTBP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.837646484375	2	536.292037	1070.56952	1.8752	0.0010056	3.2117	0.0017224	5.0868	0.002728	536.2930420101115	77.694	0.71138	77.694	77.422	78.134	0					38	16	3	0	0	0	0.027462	1	7824	7824		55.504	12.64	1	1991700	+		38087	29014	31414	31438	41442	41442					0.037058130449622695
MIQYTKPHATK	11	Unmodified	_MIQYTKPHATK_					0	0	0			REV__tr|A0A553SJ60|A0A553SJ60_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_16180PE=4SV=1	REV__tr|A0A553SJ60|A0A553SJ60_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_16180PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	440.7495422363281	3	439.904307	1316.69109	-1.1334	-0.0004986	-2.5131	-0.0011055	-3.6465	-0.0016041	440.2377330990413	43.542	0.46405	40.534	40.378	40.842	-3.0074					13	8	2	0	0	0	0.025904	1	2117	2117		24.276	7.5585	1	10683	+		38088	29969	31415	31439	41443	41443					0.04541390616782337
MIRALHLFP	9	Unmodified	_MIRALHLFP_					0	0	0		ENSG00000186160|ENST00000334194|CYP4Z1	ENSG00000186160|ENST00000334194|CYP4Z1	ENSG00000186160|ENST00000334194|CYP4Z1	MULTI-MSMS	OvCa99_classI_Rep5	1	549.3218383789062	2	549.318054	1096.62156	1.3582	0.00074609	1.43	0.00078555	2.7883	0.0015316	549.3187527997114	148.09	0.39055	148.09	147.84	148.23	0					13	7	2	0	0	0	0.42057	1	17338	17338		50.025	12.213	1	57896			38089	8318	31416	31440	41444	41444					0.07710976458702135
MIREILDP	8	Unmodified	_MIREILDP_					0	0	0			REV__tr|A0A7D6VUM3|A0A7D6VUM3_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12920PE=4SV=1	REV__tr|A0A7D6VUM3|A0A7D6VUM3_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12920PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.3055114746094	2	493.770603	985.526652	0.4705	0.00023232	-3.9209	-0.001936	-3.4504	-0.0017037	493.768579903104	115.43	0.79123	114.03	113.72	114.51	-1.3977					31	15	3	0	0	0	0.028476	1	10742	10742		23.042	0	1	41435	+		38090	31688	31417	31441	41445	41445					0.03330998196861401
MIREQKKIE	9	Unmodified	_MIREQKKIE_					0	0	0			REV__ENST00000576089.1_1_6:125581120-125581456:+|nuORF	REV__ENST00000576089.1_1_6:125581120-125581456:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	587.8369750976562	2	587.834265	1173.65398	1.295	0.00076125	1.496	0.00087942	2.791	0.0016407	587.835135304692	147.13	0.73401	147.13	146.82	147.55	0					31	14	3	0	0	0	0.37135	1	17235	17235		54.776	1.8396	1	219220	+		38091	27781	31418	31442	41446	41446					0.07409719071051768
MIRFIQVV	8	Unmodified	_MIRFIQVV_					0	0	0			REV__ENSG00000182674|ENST00000523207|KCNB2	REV__ENSG00000182674|ENST00000523207|KCNB2	MULTI-MSMS	OvCa99_classI_Rep5	1	503.2989807128906	2	503.29933	1004.58411	1.8457	0.00092895	-2.4494	-0.0012328	-0.60364	-0.00030381	503.2981310422337	118.34	1.3626	118.34	117.97	119.33	0					66	28	4	0	0	0	0.71369	1	13579	13579		40.573	3.4135	1	804850	+		38092	22311	31419	31443	41447	41447					0.08199885193107548
MIRHRQRLLIW	11	Unmodified	_MIRHRQRLLIW_					0	0	0			REV__ENST00000548924.5_1_12:70901743-70904223:+|nuORF	REV__ENST00000548924.5_1_12:70901743-70904223:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	508.3037109375	3	507.969757	1520.88744	-0.31781	-0.00016144	-0.25607	-0.00013007	-0.57388	-0.00029151	507.96965768838425	23.774	0.48978	23.774	23.547	24.036	0					27	9	4	0	0	0	0.72573	1	366	366		6.001	1.3885	1	299220	+		38093	27450	31420	31444	41448	41448					0.14783240301244405
MIRIARIVT	9	Unmodified	_MIRIARIVT_					0	0	0			REV__nc|ENSG00000185760|Q9NR82-2|KCNQ5	REV__nc|ENSG00000185760|Q9NR82-2|KCNQ5	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.759521484375	2	536.836611	1071.65867	1.9958	0.0010714	-4.177	-0.0022424	-2.1812	-0.0011709	536.8342487043067	85.275	0.53838	85.275	85.046	85.585	0					28	12	3	0	0	0	0.027462	1	8964	8964		34.173	6.2903	1	932860	+		38094	22528	31421	31445	41449	41449					0.12570648004498253
MIRNISQHD	9	Unmodified	_MIRNISQHD_					0	0	0		nc|ENSG00000075945|Q92845-4|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.3259887695312	2	557.277115	1112.53968	1.6211	0.00090342	0.37791	0.0002106	1.999	0.001114	557.2771925270545	124.75	0.41974	124.75	124.51	124.93	0					19	8	3	0	0	0	0.027441	1	14373	14373		58.782	14.665	1	235950			38095	1547	31422	31446	41450	41450					-0.012091706910496214
MIRPMVAFQ	9	Unmodified	_MIRPMVAFQ_					0	0	0			REV__PKHD1|p.A3983Kfs*44|1|0.16|ENSG00000170927|chr6:51619327-51619360|CAGGTACACCTGCTGAGCAGGAGCACCTGGAGCA/-|frameshift_variant;REV__PKHD1|p.P2004Hfs*49|1|0.03|ENSG00000170927|chr6:51934220-51934221|-/T|frameshift_variant	REV__PKHD1|p.A3983Kfs*44|1|0.16|ENSG00000170927|chr6:51619327-51619360|CAGGTACACCTGCTGAGCAGGAGCACCTGGAGCA/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	546.79052734375	2	546.788272	1091.56199	0.88293	0.00048278	0.37769	0.00020652	1.2606	0.00068929	546.7883836823588	139.32	2.1506	139.32	138.88	141.03	0					78	44	3	0	0	0	0.46377	1	16270	16270		45.952	5.1738	1	147180	+		38096	21578;29299	31423	31447	41451	41451					0.01987337453033433
MIRRMIFPGG	10	Unmodified	_MIRRMIFPGG_					0	0	0		ENST00000576789.1_3_19:7427669-7440673:+|nuORF	ENST00000576789.1_3_19:7427669-7440673:+|nuORF	ENST00000576789.1_3_19:7427669-7440673:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.286376953125	2	589.320271	1176.62599	1.0986	0.00064744	-3.9708	-0.00234	-2.8721	-0.0016926	589.8187364257798	155.26	0.4595	155.26	155.12	155.58	0					10	8	2	0	0	0	0.026752	1	18181	18181		44.117	2.6902	1	16924			38097	13952	31424	31448	41452	41452					0.044741176099933
MISENRRA	8	Unmodified	_MISENRRA_					0	0	0		ENSG00000164366|ENST00000296824|CCDC127	ENSG00000164366|ENST00000296824|CCDC127	ENSG00000164366|ENST00000296824|CCDC127	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.2723693847656	2	488.753276	975.491998	-0.45753	-0.00022362	-3.6405	-0.0017793	-4.098	-0.0020029	488.7512667785459	60.12	0.47529	60.12	59.839	60.314	0					26	11	3	0	0	0	0.028476	1	5218	5218		25.45	13.243	1	544100			38098	6452	31425	31449	41453	41453					0.0032717510877091627
MISFDLQKL	9	Unmodified	_MISFDLQKL_					0	0	0			REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	548.3530883789062	2	547.79936	1093.58417	0.39016	0.00021373	-3.7642	-0.002062	-3.374	-0.0018483	547.7967733997905	96.515	0.78766	95.556	95.182	95.97	-0.95857					37	15	4	0	0	0	0.027462	1	8736	8736		30.504	9.5567	1	55806	+		38099	25391	31426	31450	41454	41454					0.04111840402447342
MISFDLQKL	9	Unmodified	_MISFDLQKL_					0	0	0			REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	547.79936	1093.58417	-1.0955	-0.00060012	-1.8507	-0.0010138	-2.9462	-0.0016139	548.2999801257267	97.36	1.003	95.6	95.157	96.16	-1.7595	0.052421	0.0017176	NaN	30.504	41	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77227	+		38100	25391	31426	31450							0.04111840402447342
MISFDLQKL	9	Unmodified	_MISFDLQKL_					0	0	0			REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	547.79936	1093.58417	0.23006	0.00012603	-3.9896	-0.0021855	-3.7596	-0.0020595	547.7966581788249	97.866	0.75475	95.487	95.166	95.921	-2.3786	-0.06067	-0.00062585	NaN	30.504	34	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75981	+		38101	25391	31426	31450							0.04111840402447342
MISFHLLLC	9	Unmodified	_MISFHLLLC_					0	0	0			REV__ENST00000439326.7_1_19:12188026-12188518:+|nuORF	REV__ENST00000439326.7_1_19:12188026-12188518:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	538.3025512695312	2	538.785198	1075.55584	1.0474	0.00056432	1.5299	0.0008243	2.5773	0.0013886	538.7857423020685	89.824	0.74313	88.522	88.037	88.78	-1.302					25	14	2	0	0	0	0.027425	1	7864	7864		50.025	2.1089	1	22563	+		38102	25820	31427	31451	41455	41455					0.021088192215302115
MISFVKDIM	9	Unmodified	_MISFVKDIM_					0	0	0		ENST00000497170.5_1_13:101795259-101997694:-|nuORF	ENST00000497170.5_1_13:101795259-101997694:-|nuORF	ENST00000497170.5_1_13:101795259-101997694:-|nuORF	MSMS	OvCa99_classI_Rep5	1	542.2854614257812	2	542.282489	1082.55042	NaN	NaN	NaN	NaN	NaN	NaN	NaN	53.782	1	53.782	53.282	54.282	0								0	0	0	0.17192	1	4297	4297		45.952	3.5558	1				38103	12802	31428	31452	41456	41456					0.012450956390239298
MISILRFK	8	Unmodified	_MISILRFK_					0	0	0		TAAR6|p.H59R|1|0.03|ENSG00000146383|chr6:132570497-132570497|A/G|missense_variant	TAAR6|p.H59R|1|0.03|ENSG00000146383|chr6:132570497-132570497|A/G|missense_variant	TAAR6|p.H59R|1|0.03|ENSG00000146383|chr6:132570497-132570497|A/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.76287841796875	2	504.307155	1006.59976	-1.3367	-0.00067412	3.3899	0.0017096	2.0532	0.0010354	504.3094408050113	54.108	0.91962	50.861	50.314	51.234	-3.2474					37	17	3	0	0	0	0.028476	1	3298	3298		24.203	5.8783	1	52390			38104	32940	31429	31453	41457	41457					0.09672171710155908
MISKVFLIL	9	Oxidation (M)	_M(Oxidation (M))ISKVFLIL_		M(1)ISKVFLIL		M(64)ISKVFLIL	0	0	1		tr|A0A7D7AB20|A0A7D7AB20_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13600PE=4SV=1	tr|A0A7D7AB20|A0A7D7AB20_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13600PE=4SV=1	tr|A0A7D7AB20|A0A7D7AB20_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13600PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3338012695312	2	540.330296	1078.64604	-0.48019	-0.00025946	3.2953	0.0017805	2.8151	0.0015211	540.3320087400219	112.29	1.3669	110.78	110.42	111.79	-1.5111					65	26	4	0	0	0	0.28934	1	10366	10366		64.207	12.872	1	243890			38105	36212	31430	31454	41458	41458		783			0.10986191821598368
MISLTGWIV	9	Unmodified	_MISLTGWIV_					0	0	0			REV__ENSG00000106304|ENST00000682466|SPAM1	REV__ENSG00000106304|ENST00000682466|SPAM1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.8055114746094	2	510.283346	1018.55214	-0.41146	-0.00020996	4.0801	0.002082	3.6686	0.0018721	510.28528168587513	77.588	0.96915	74.771	74.488	75.457	-2.8165					37	19	3	0	0	0	0.027449	1	6221	6221		50.025	18.495	1	226530	+		38106	17792	31431	31455	41459	41459					0.04360472719304198
MISLTGWIV	9	Unmodified	_MISLTGWIV_					0	0	0			REV__ENSG00000106304|ENST00000682466|SPAM1	REV__ENSG00000106304|ENST00000682466|SPAM1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	510.283346	1018.55214	1.4188	0.00072398	4.5969	0.0023457	6.0157	0.0030697	510.28305620957263	74.597	0.40365	74.597	74.517	74.92	0	-0.093391	0.00021622	NaN	50.025	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232810	+		38107	17792	31431	31455							0.04360472719304198
MISPELSVK	9	Unmodified	_MISPELSVK_					0	0	0			REV__nc|ENSG00000113597|A5PLN9-2|TRAPPC13	REV__nc|ENSG00000113597|A5PLN9-2|TRAPPC13	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.2452697753906	2	502.27826	1002.54197	-0.85793	-0.00043092	2.8449	0.0014289	1.987	0.000998	502.77929686835756	42.083	0.43361	42.083	41.809	42.242	0					23	9	3	0	0	0	0.027462	1	2657	2657		16.473	0	1	140480	+		38108	18163	31432	31456	41460	41460					0.040798649940711584
MISPRRSAR	9	Unmodified	_MISPRRSAR_					0	0	0			REV__ENST00000399562.8_1_22:19431472-19431661:-|nuORF	REV__ENST00000399562.8_1_22:19431472-19431661:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.82861328125	2	537.303467	1072.59238	-0.57891	-0.00031105	1.7605	0.00094591	1.1816	0.00063486	537.3044140485251	123.92	0.29607	123.69	123.48	123.78	-0.23193					8	5	2	0	0	0	0.027462	1	12013	12013		37.812	0	1	5915.8	+		38109	25390	31433	31457	41461	41461					0.058988321624156015
MISQRHTVGF	10	Unmodified	_MISQRHTVGF_					0	0	0			REV__nc|ENSG00000203859|P26439-2|HSD3B2	REV__nc|ENSG00000203859|P26439-2|HSD3B2	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.7896118164062	2	588.303133	1174.59171	1.8374	0.0010809	-1.4234	-0.0008374	0.41394	0.00024352	588.3019406347381	136.42	0.37683	136.42	136.21	136.58	0					11	7	2	0	0	0	0.026802	1	15891	15891		14.137	0	1	50129	+		38110	29095	31434	31458	41462	41462					0.011399927227103035
MISRALLAP	9	Unmodified	_MISRALLAP_					0	0	0		tr|A0A553SL71|A0A553SL71_NIACIHistidinol-phosphateaminotransferaseOS=NialliacirculansOX=1397GN=hisCPE=3SV=1	tr|A0A553SL71|A0A553SL71_NIACIHistidinol-phosphateaminotransferaseOS=NialliacirculansOX=1397GN=hisCPE=3SV=1	tr|A0A553SL71|A0A553SL71_NIACIHistidinol-phosphateaminotransferaseOS=NialliacirculansOX=1397GN=hisCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.2903137207031	2	486.288963	970.563372	1.0523	0.00051172	-0.39232	-0.00019078	0.65997	0.00032094	486.2884483834136	96.773	2.621	94.348	93.609	96.23	-2.4256					142	51	5	0	0	0	0.16524	1	8570	8570		82.305	0	1	3468200			38111	33690	31435	31459	41463	41463					0.07691294813434979
MISVTRKV	8	Unmodified	_MISVTRKV_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-MSMS	OvCa9_classI_Rep3	3	467.2804260253906	2	467.281137	932.547722	-0.47931	-0.00022397	-3.1704	-0.0014815	-3.6497	-0.0017054	467.2795250703273	97.402	0.74762	95.642	95.362	96.11	-1.7595					48	14	4	0	0	0	0.67745	2	6469	6450;6469		47.916	1.9636	1	638550	+		38112	20520	31436	31460	41464;41465	41465					0.07875008296389296
MISYPKGREI	10	Unmodified	_MISYPKGREI_					0	0	0		ENSG00000163162|ENST00000295317|RNF149	ENSG00000163162|ENST00000295317|RNF149	ENSG00000163162|ENST00000295317|RNF149	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.3178100585938	2	597.320991	1192.62743	0.092565	5.5291E-05	-2.8011	-0.0016731	-2.7085	-0.0016178	597.319080326334	121.42	0.92976	120.07	119.79	120.72	-1.3479					42	17	3	0	0	0	0.49558	1	11452	11452		54.776	1.4249	1	77810			38113	6275	31437	31461	41466	41466					0.03882030179738649
MITETTVQV	9	Unmodified	_MITETTVQV_					0	0	0		ENSG00000120549|ENST00000376454|KIAA1217;nc|ENSG00000120549|Q5T5P2-3|KIAA1217	ENSG00000120549|ENST00000376454|KIAA1217	ENSG00000120549|ENST00000376454|KIAA1217	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.2850036621094	2	511.26535	1020.51615	1.9364	0.00099003	3.0995	0.0015847	5.036	0.0025747	511.26680418121185	93.82	0.21001	93.82	93.673	93.883	0					6	4	2	0	0	0	0.027403	1	10176	10176		69.628	14.851	1	92701			38114	3435	31438	31462	41467	41467					0.006709707517870811
MITIHLPSPV	10	Unmodified	_MITIHLPSPV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OvCa9_classI_Rep3	3	554.3175048828125	2	554.315177	1106.6158	0.863	0.00047838	4.4141	0.0024468	5.2771	0.0029252	554.317459181584	121.82	1.2051	120.79	120.48	121.69	-1.0286					44	22	3	0	0	0	0.58282	1	9344	9344		44.117	1.7207	1	131490			38115	6826	31439	31463	41468	41468					0.06675833156396038
MITILFLPV	9	Oxidation (M)	_M(Oxidation (M))ITILFLPV_		M(1)ITILFLPV		M(50)ITILFLPV	0	0	1		ENST00000368885.7_1_6:111214736-111214820:+|nuORF	ENST00000368885.7_1_6:111214736-111214820:+|nuORF	ENST00000368885.7_1_6:111214736-111214820:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	531.8169555664062	2	531.817021	1061.61949	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.02	1	135.47	134.97	135.97	-1.5437								0	0	0	0.17045	1	13307	13307		50.025	9.2464	1				38116	10886	31440	31464	41469	41469		305			0.09114502930242452
MITLPAIPSV	10	Unmodified	_MITLPAIPSV_					0	0	0		HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|165|2|anti-sense	HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|165|2|anti-sense	HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|165|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.2982177734375	2	521.304278	1040.594	1.6791	0.00087534	-1.2473	-0.00065024	0.43182	0.00022511	521.3035055461844	110.6	0.93459	110.6	110.13	111.07	0					30	20	3	0	0	0	0.026802	1	12522	12522		34.173	3.6689	1	1521200			38117	14465	31441	31465	41470	41470					0.07533028407806341
MITQMIKL	8	2 Oxidation (M)	_M(Oxidation (M))ITQM(Oxidation (M))IKL_		M(1)ITQM(1)IKL		M(79)ITQM(79)IKL	0	0	2			REV__TEX14|p.S1106Rfs*18|1|0.46|ENSG00000121101|chr17:58579723-58579724|-/AATCAGAGACTTTTTCACATACTTCATGTGT|frameshift_variant	REV__TEX14|p.S1106Rfs*18|1|0.46|ENSG00000121101|chr17:58579723-58579724|-/AATCAGAGACTTTTTCACATACTTCATGTGT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	505.2752990722656	2	505.274664	1008.53477	-1.8695	-0.0009446	1.6838	0.00085081	-0.18564	-9.3798E-05	505.2754531740072	84.757	1.4423	83.211	82.797	84.239	-1.5462					73	28	4	0	0	0	0.48084	2	7319	7296;7319		79.451	8.7574	1	807860	+		38118	18530	31442	31466	41471;41472	41472		427;428			0.03084809121980925
MITTTMLMIC	10	Unmodified	_MITTTMLMIC_					0	0	0		ENSG00000183396|ENST00000330862|TMEM89	ENSG00000183396|ENST00000330862|TMEM89	ENSG00000183396|ENST00000330862|TMEM89	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.2761840820312	2	579.275492	1156.53643	-0.24621	-0.00014262	3.4931	0.0020235	3.2469	0.0018808	579.27714031887	113.03	0.83945	111.58	111.31	112.15	-1.4461					35	16	4	0	0	0	0.52321	1	10457	10457		51.335	3.3759	1	118850			38119	8072	31443	31467	41473	41473					-0.03557641175916615
MITVRKAHIV	10	Unmodified	_MITVRKAHIV_					0	0	0			REV__ENSG00000168148|ENST00000366696|H3-4	REV__ENSG00000168148|ENST00000366696|H3-4	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.3385620117188	2	584.355168	1166.69578	0.35958	0.00021012	2.2493	0.0013144	2.6089	0.0015245	584.3567326054794	74.404	0.15347	74.404	74.324	74.478	0					5	3	2	0	0	0	0.027021	1	7360	7360		15.642	0	1	144850	+		38120	21351	31444	31468	41474	41474					0.1191031955024755
MIVIRFLN	8	Unmodified	_MIVIRFLN_					0	0	0		tr|A0A7D7A1D6|A0A7D7A1D6_9CLOTDUF4297domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12035PE=4SV=1	tr|A0A7D7A1D6|A0A7D7A1D6_9CLOTDUF4297domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12035PE=4SV=1	tr|A0A7D7A1D6|A0A7D7A1D6_9CLOTDUF4297domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12035PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	502.78106689453125	2	503.29933	1004.58411	-0.95303	-0.00047966	0.15434	7.7681E-05	-0.79868	-0.00040198	503.299258588011	88.139	1.5621	86.008	85.236	86.798	-2.1309					69	30	3	0	0	0	0.028476	1	5366	5366		28.254	1.4582	1	67299			38121	36036	31445	31469	41475	41475					0.08199885193096179
MIVLNVMIK	9	Unmodified	_MIVLNVMIK_					0	0	0			REV__ENST00000229179.8_1_12:69125419-69125482:+|nuORF	REV__ENST00000229179.8_1_12:69125419-69125482:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	530.8173217773438	2	530.816499	1059.61844	-0.32708	-0.00017362	-0.91005	-0.00048307	-1.2371	-0.00065669	530.8158679655988	49.003	0.96092	49.003	48.718	49.679	0					47	21	4	0	0	0	0.16524	1	3622	3622		82.305	0.064519	1	1607100	+		38122	23780	31446	31470	41476	41476					0.09101965289687541
MIVRVEID	8	Unmodified	_MIVRVEID_					0	0	0			REV__tr|A0A7D6VU65|A0A7D6VU65_9CLOTCoenzymeAbiosynthesisbifunctionalproteinCoaBCOS=ClostridiumintestinaleOX=36845GN=coaBCPE=3SV=1	REV__tr|A0A7D6VU65|A0A7D6VU65_9CLOTCoenzymeAbiosynthesisbifunctionalproteinCoaBCOS=ClostridiumintestinaleOX=36845GN=coaBCPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.7911071777344	2	487.770603	973.526652	-0.90124	-0.0004396	-2.6755	-0.001305	-3.5767	-0.0017446	487.76915203871715	89.195	2.261	87.064	86.461	88.722	-2.1309					85	44	3	0	0	0	0.028476	1	5576	5576		31.955	0	1	417700	+		38123	31655	31447	31471	41477	41477					0.03882998196866083
MIVVISGIMS	10	Unmodified	_MIVVISGIMS_					0	0	0		tr|A0A553SQ96|A0A553SQ96_NIACILTAsynthasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_23535PE=3SV=1	tr|A0A553SQ96|A0A553SQ96_NIACILTAsynthasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_23535PE=3SV=1	tr|A0A553SQ96|A0A553SQ96_NIACILTAsynthasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_23535PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.249267578125	2	525.290314	1048.56607	-0.46367	-0.00024356	0.98244	0.00051606	0.51876	0.0002725	525.2903865880297	58.666	0.44672	58.666	58.446	58.892	0					14	10	2	0	0	0	0.027021	1	4972	4972		29.15	0	1	280580			38124	34136	31448	31472	41478	41478					0.04373382156063599
MIVVYLIV	8	Unmodified	_MIVVYLIV_					0	0	0		tr|A0A553SUK8|A0A553SUK8_NIACIPurinepermeaseOS=NialliacirculansOX=1397GN=CEQ21_00565PE=3SV=1	tr|A0A553SUK8|A0A553SUK8_NIACIPurinepermeaseOS=NialliacirculansOX=1397GN=CEQ21_00565PE=3SV=1	tr|A0A553SUK8|A0A553SUK8_NIACIPurinepermeaseOS=NialliacirculansOX=1397GN=CEQ21_00565PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	475.294677734375	2	475.293182	948.571812	2.7086	0.0012874	0.70282	0.00033405	3.4114	0.0016214	475.2947388308051	94.423	1.0276	94.423	93.964	94.992	0					41	23	3	0	0	0	0.46547	1	10278	10278		80.997	13.67	1	986200			38125	34619	31449	31473	41479	41479					0.09546848730064994
MIVYIILGV	9	Unmodified	_MIVYIILGV_					0	0	0		tr|A0A553SJQ1|A0A553SJQ1_NIACICytochromeubiquinoloxidasesubunitIOS=NialliacirculansOX=1397GN=CEQ21_17330PE=3SV=1	tr|A0A553SJQ1|A0A553SJQ1_NIACICytochromeubiquinoloxidasesubunitIOS=NialliacirculansOX=1397GN=CEQ21_17330PE=3SV=1	tr|A0A553SJQ1|A0A553SJQ1_NIACICytochromeubiquinoloxidasesubunitIOS=NialliacirculansOX=1397GN=CEQ21_17330PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	511.2897033691406	2	510.811739	1019.60893	-0.57786	-0.00029518	4.1114	0.0021002	3.5335	0.001805	510.81374111260067	94.913	1.6409	93.018	92.662	94.303	-1.8956					75	32	3	0	0	0	0.027462	1	6235	6235		29.842	0	1	481210			38126	33527	31450	31474	41480	41480					0.09990520275823656
MIWRLHQV	8	Unmodified	_MIWRLHQV_					0	0	0			REV__nc|ENSG00000102763|A3KMH1-2|VWA8	REV__nc|ENSG00000102763|A3KMH1-2|VWA8	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.6638793945312	2	541.800029	1081.5855	2.905	0.0015739	4.0582	0.0021987	6.9632	0.0037726	541.802836457563	89.588	0.53448	89.588	89.313	89.848	0					22	12	3	0	0	0	0.028476	1	9593	9593		26.796	0	1	1003100	+		38127	17570	31451	31475	41481	41481					0.04797519281851237
MIYCYFAKD	9	Unmodified	_MIYCYFAKD_					0	0	0			REV__chrX:118419411-118432781|190|10.3|0.42|4.6|+|2|TE_info:L1PB1,L1PB1_dup8380,L1,LINE,donor,-,118415804,118419411|None,WDR44|29	REV__chrX:118419411-118432781|190|10.3|0.42|4.6|+|2|TE_info:L1PB1,L1PB1_dup8380,L1,LINE,donor,-,118415804,118419411|None,WDR44|29	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.3003540039062	2	577.256471	1152.49839	0.84503	0.0004878	3.2276	0.0018632	4.0727	0.002351	577.2583264213956	155.3	0.50067	155.3	154.98	155.48	0					14	9	2	0	0	0	0.027418	1	18190	18190		68.787	10.005	1	39224	+		38128	16130	31452	31476	41482	41482					-0.07176067774730654
MIYEDYIS	8	Unmodified	_MIYEDYIS_					0	0	0		RGS17|p.R134G|1|0.14|ENSG00000091844|chr6:153024306-153024306|T/C|missense_variant;ENSG00000091844|ENST00000206262|RGS17	RGS17|p.R134G|1|0.14|ENSG00000091844|chr6:153024306-153024306|T/C|missense_variant;ENSG00000091844|ENST00000206262|RGS17	RGS17|p.R134G|1|0.14|ENSG00000091844|chr6:153024306-153024306|T/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.7623291015625	2	517.230976	1032.4474	1.9973	0.0010331	4.3941	0.0022728	6.3914	0.0033058	517.2336151582849	101.13	0.45805	101.13	100.94	101.4	0					12	10	2	0	0	0	0.028476	1	11273	11273		13.775	0	1	91668			38129	32783;1877	31453	31477	41483	41483					-0.06752693547923627
MIYLAALIF	9	Unmodified	_MIYLAALIF_					0	0	0		tr|A0A553SJ13|A0A553SJ13_NIACIDUF2198familyproteinOS=NialliacirculansOX=1397GN=CEQ21_15885PE=4SV=1	tr|A0A553SJ13|A0A553SJ13_NIACIDUF2198familyproteinOS=NialliacirculansOX=1397GN=CEQ21_15885PE=4SV=1	tr|A0A553SJ13|A0A553SJ13_NIACIDUF2198familyproteinOS=NialliacirculansOX=1397GN=CEQ21_15885PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.2871704101562	2	527.803914	1053.59328	-0.033317	-1.7585E-05	3.4588	0.0018256	3.4255	0.001808	527.8055200351788	89.637	1.1521	87.062	86.752	87.904	-2.575					36	22	2	0	0	0	0.027412	1	7713	7713		29.842	0	1	278010			38130	33452	31454	31478	41484	41484					0.06862233758761249
MIYLRKQN	8	Unmodified	_MIYLRKQN_					0	0	0			REV__ENSG00000121579|ENST00000240922|NAA50	REV__ENSG00000121579|ENST00000240922|NAA50	MULTI-SECPEP	OvCa9_classI_Rep2	2	533.3480834960938	2	533.297319	1064.58008	-0.96675	-0.00051557	-3.1182	-0.0016629	-4.0849	-0.0021785	533.2955391484766	93.248	0.81909	92.079	91.756	92.575	-1.168					28	15	2	0	0	0	0.028476	1	8280	8280		71.378	0	1	52759	+		38131	18547	31455	31479	41485	41485					0.05037795699399794
MIYTTLSLF	9	Unmodified	_MIYTTLSLF_					0	0	0		tr|A0A7D6VNB7|A0A7D6VNB7_9CLOTYggTfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14640PE=4SV=1	tr|A0A7D6VNB7|A0A7D6VNB7_9CLOTYggTfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14640PE=4SV=1	tr|A0A7D6VNB7|A0A7D6VNB7_9CLOTYggTfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14640PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	544.78173828125	2	544.788461	1087.56237	-5.2263	-0.0028472	-1.9012	-0.0010357	-7.1274	-0.0038829	544.7872760612969	159.58	0.7265	159.35	159	159.73	-0.22696					22	14	2	0	0	0	0.65476	1	16235	16235		25.45	2.4077	1	23423			38132	34690	31456	31480	41486	41486					0.022090356538910783
MKACRCSVCC	10	Unmodified	_MKACRCSVCC_					0	0	0			REV__ENST00000267116.7_1_12:56632135-56632420:-|nuORF	REV__ENST00000267116.7_1_12:56632135-56632420:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.297607421875	2	552.217985	1102.42142	1.6998	0.00093865	0.60519	0.00033419	2.305	0.0012728	552.218098880813	93.118	0.50162	93.118	92.803	93.305	0					22	11	3	0	0	0	0.026994	1	10072	10072		40.778	10.46	1	358920	+		38133	24050	31457	31481	41487	41487					-0.1256964885872094
MKAFYAPVH	9	Unmodified	_MKAFYAPVH_					0	0	0		nc|ENSG00000064651|P55011-3|SLC12A2;ENSG00000064651|ENST00000262461|SLC12A2;ENST00000504416.5_1_5:127493760-127503560:+|nuORF;ENST00000509616.1_1_5:127493760-127507455:+|nuORF	nc|ENSG00000064651|P55011-3|SLC12A2	nc|ENSG00000064651|P55011-3|SLC12A2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.9510498046875	2	532.273312	1062.53207	-0.30248	-0.000161	-0.43533	-0.00023171	-0.73781	-0.00039272	532.2732014484809	37.78	0.74662	34.888	34.641	35.388	-2.8925					19	14	2	0	0	0	0.027462	1	1421	1421		31.955	0	1	20580			38134	1302	31458	31482	41488	41488					0.003307217793462769
MKAMILRET	9	Unmodified	_MKAMILRET_					0	0	0		tr|A0A553SRN8|A0A553SRN8_NIACIAlcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_01460PE=4SV=1	tr|A0A553SRN8|A0A553SRN8_NIACIAlcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_01460PE=4SV=1	tr|A0A553SRN8|A0A553SRN8_NIACIAlcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_01460PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	546.8013305664062	2	546.798837	1091.58312	2.0163	0.0011025	2.5875	0.0014149	4.6038	0.0025174	546.8001203037154	107.36	1.9187	107.36	107.14	109.06	0					93	44	5	0	0	0	0.11471	1	12158	12158		93.195	18.94	1	12261000			38135	34283	31459	31483	41489	41489					0.040993027618924316
MKCCLLIRA	9	Unmodified	_MKCCLLIRA_					0	0	0			REV__ENST00000446176.6_1_9:132650018-132650141:-|nuORF	REV__ENST00000446176.6_1_9:132650018-132650141:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.8173217773438	2	525.784675	1049.5548	-0.006454	-3.3934E-06	-3.8408	-0.0020194	-3.8472	-0.0020228	525.7824848971734	93.104	2.1891	91.936	91.446	93.635	-1.168					71	42	3	0	0	0	0.027402	1	8304	8304		66.429	0	1	191350	+		38136	25898	31460	31484	41490	41490					0.03200281580961928
MKCDKQKTV	9	Unmodified	_MKCDKQKTV_					0	0	0			REV__ENSG00000197724|ENST00000359246|PHF2	REV__ENSG00000197724|ENST00000359246|PHF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.310546875	2	540.780644	1079.54674	-0.61632	-0.00033329	1.0304	0.00055724	0.41412	0.00022395	540.7809593043194	68.058	0.35022	68.058	67.842	68.192	0					11	8	2	0	0	0	0.027462	1	6380	6380		37.812	0	1	210130	+		38137	22946	31461	31485	41491	41491					0.010144258651735072
MKCSDKNN	8	Unmodified	_MKCSDKNN_					0	0	0			REV__ENST00000421701.1_1_10:30628985-30629120:-|nuORF	REV__ENST00000421701.1_1_10:30628985-30629120:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.2960205078125	2	470.20477	938.394986	0.0061205	2.8779E-06	-3.0927	-0.0014542	-3.0866	-0.0014513	470.20325019555366	103.97	0.89317	101.85	101.54	102.43	-2.1192					25	16	2	0	0	0	0.028476	1	9396	9396		29.15	0	1	40454	+		38138	25609	31462	31486	41492	41492					-0.07667555162527151
MKDRTIII	8	Unmodified	_MKDRTIII_					0	0	0		tr|A0A553SUF6|A0A553SUF6_NIACIAminotransferaseOS=NialliacirculansOX=1397GN=CEQ21_06825PE=3SV=1	tr|A0A553SUF6|A0A553SUF6_NIACIAminotransferaseOS=NialliacirculansOX=1397GN=CEQ21_06825PE=3SV=1	tr|A0A553SUF6|A0A553SUF6_NIACIAminotransferaseOS=NialliacirculansOX=1397GN=CEQ21_06825PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	495.2923889160156	2	495.294245	988.573937	-2.3996	-0.0011885	-1.0806	-0.00053522	-3.4802	-0.0017237	495.29351246323944	141.08	0.78638	140.05	139.82	140.61	-1.0339					29	15	3	0	0	0	0.7594	1	11653	11653		21.96	0	1	55165			38139	34604	31463	31487	41493	41493					0.07919277467874508
MKEDFLKP	8	Unmodified	_MKEDFLKP_					0	0	0		ENSG00000164742|ENST00000297323|ADCY1	ENSG00000164742|ENST00000297323|ADCY1	ENSG00000164742|ENST00000297323|ADCY1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	504.7966003417969	2	504.265153	1006.51575	-0.14385	-7.2537E-05	-4.4598	-0.0022489	-4.6037	-0.0023215	504.2633598790036	67.027	0.29573	63.537	63.344	63.64	-3.4902					6	5	2	0	0	0	0.028476	1	4900	4900		51.335	0	1	8796.5			38140	6482	31464	31488	41494	41494					0.012755958225852737
MKELKKAEI	9	Unmodified	_MKELKKAEI_					0	0	0			REV__nc|ENSG00000112851|Q96RT1-6|ERBIN	REV__nc|ENSG00000112851|Q96RT1-6|ERBIN	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3185424804688	2	545.32046	1088.62637	-1.828	-0.00099686	-1.9254	-0.00105	-3.7534	-0.0020468	545.3193247612335	62.213	1.8935	59.454	58.882	60.775	-2.7593					104	36	5	0	0	0	0.14445	2	4685	4685;4691		85.862	10.819	1	1098800	+		38141	28801	31465	31489	41495;41496	41495					0.08559815810826876
MKERNIKP	8	Unmodified	_MKERNIKP_					0	0	0			REV__ENSG00000169067|ENST00000423391|ACTBL2	REV__ENSG00000169067|ENST00000423391|ACTBL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3281555175781	2	508.289494	1014.56443	-0.7823	-0.00039763	-3.4005	-0.0017284	-4.1828	-0.0021261	508.2876998278148	66.11	0.82588	66.11	65.665	66.491	0					61	20	5	0	0	0	0.028476	1	6068	6068		38.806	9.6566	1	3918700	+		38142	21428	31466	31490	41497	41497					0.05773509182347425
MKETRDQLT	9	Unmodified	_MKETRDQLT_					0	0	0			REV__nc|ENSG00000106336|O75426-4|FBXO24	REV__nc|ENSG00000106336|O75426-4|FBXO24	MULTI-MSMS	OvCa99_classI_Rep5	1	561.2858276367188	2	561.284605	1120.55466	3.141	0.001763	0.3193	0.00017922	3.4603	0.0019422	561.2844684068152	106.23	0.61346	106.23	105.92	106.54	0					31	13	3	0	0	0	0.1804	1	11953	11953		79.713	0.26157	1	1127800	+		38143	17796	31467	31491	41498	41498					-0.0007972361370320868
MKEWLSKMIDK	11	Unmodified	_MKEWLSKMIDK_					0	0	0			REV__ENST00000409817.1_1_2:136873593-136873707:-|nuORF	REV__ENST00000409817.1_1_2:136873593-136873707:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	470.7551574707031	3	470.249086	1407.72543	-0.45975	-0.0002162	-1.2194	-0.00057343	-1.6792	-0.00078963	470.2482470167664	59.552	0.61849	56.771	56.61	57.228	-2.7801					14	11	2	0	0	0	0.025624	1	4348	4348		45.908	23.328	1	18717	+		38144	25482	31468	31492	41499	41499					0.03787470713427865
MKFKPGKLKG	10	Unmodified	_MKFKPGKLKG_					0	0	0			REV__ENSG00000124942|ENST00000378024|AHNAK	REV__ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.320556640625	2	567.346812	1132.67907	1.9985	0.0011338	-3.351	-0.0019012	-1.3526	-0.00076738	567.3447686725856	86.078	0.19949	83.432	83.293	83.493	-2.6463					6	3	2	0	0	0	0.026915	1	7266	7266		20.947	0	1	13471	+		38145	18711	31469	31493	41500	41500					0.11803818664270693
MKFLTSVTI	9	Unmodified	_MKFLTSVTI_					0	0	0		tr|A0A553SNL3|A0A553SNL3_NIACIMagnesiumtransporterCorAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_24755PE=3SV=1	tr|A0A553SNL3|A0A553SNL3_NIACIMagnesiumtransporterCorAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_24755PE=3SV=1	tr|A0A553SNL3|A0A553SNL3_NIACIMagnesiumtransporterCorAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_24755PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.3115844726562	2	520.296453	1038.57835	-0.87035	-0.00045284	-1.9293	-0.0010038	-2.7997	-0.0014567	520.2958704907428	84.351	0.18793	82.09	81.974	82.162	-2.261					5	3	2	0	0	0	0.027462	1	4876	4876		11.511	0	1	67766			38146	33934	31470	31494	41501	41501					0.060607418907920874
MKFMVWFE	8	Unmodified	_MKFMVWFE_					0	0	0			REV__nc|ENSG00000172575|O95267-4|RASGRP1	REV__nc|ENSG00000172575|O95267-4|RASGRP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.8159790039062	2	559.264099	1116.51364	3.8758	0.0021676	-0.36276	-0.00020288	3.513	0.0019647	559.2640462228463	134.87	0.44504	133.33	133.16	133.61	-1.5437					13	8	2	0	0	0	0.028476	1	13079	13079		38.806	4.6336	1	13430	+		38147	21712	31471	31495	41502	41502					-0.03995156186852
MKGSNSVIHE	10	Unmodified	_MKGSNSVIHE_					0	0	0			REV__nc|ENSG00000102038|P28370-2|SMARCA1	REV__nc|ENSG00000102038|P28370-2|SMARCA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.272216796875	2	551.271498	1100.52844	-0.20266	-0.00011172	-0.11112	-6.1255E-05	-0.31378	-0.00017298	551.2713579716783	56.236	1.1123	52.942	52.516	53.628	-3.2944					47	21	3	0	0	0	0.47142	1	3586	3586		58.23	13.853	1	559910	+		38148	17534	31472	31496	41503	41503					-0.01779992785191098
MKGSNSVIHE	10	Unmodified	_MKGSNSVIHE_					0	0	0			REV__nc|ENSG00000102038|P28370-2|SMARCA1	REV__nc|ENSG00000102038|P28370-2|SMARCA1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	551.271498	1100.52844	-0.20266	-0.00011172	-0.11112	-6.1255E-05	-0.31378	-0.00017298	551.2713579716783	56.236	1.1123	52.942	52.516	53.628	-3.2944	0.019086	-0.00020214	NaN	58.23	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	559910	+		38149	17534	31472	31496							-0.01779992785191098
MKHIFKKGT	9	Unmodified	_MKHIFKKGT_					0	0	0		tr|A0A553SJL8|A0A553SJL8_NIACIAlpha/betahydrolaseOS=NialliacirculansOX=1397GN=CEQ21_17020PE=3SV=1	tr|A0A553SJL8|A0A553SJL8_NIACIAlpha/betahydrolaseOS=NialliacirculansOX=1397GN=CEQ21_17020PE=3SV=1	tr|A0A553SJL8|A0A553SJL8_NIACIAlpha/betahydrolaseOS=NialliacirculansOX=1397GN=CEQ21_17020PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.3170776367188	2	545.315512	1088.61647	-0.51373	-0.00028014	2.7466	0.0014978	2.2329	0.0012176	545.3169196404446	142.63	4.7541	141.19	139.73	144.49	-1.4427					172	91	2	0	0	0	0.61208	1	13968	13968		30.504	0.18592	1	155190			38150	33515	31473	31497	41504	41504					0.07570672596102668
MKHLGVKVKEP	11	Unmodified	_MKHLGVKVKEP_					0	0	0		nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12;ENST00000529970.5_1_11:120278459-120348246:+|nuORF;ARHGEF12|p.S634Lfs*6|1|0.03|ENSG00000196914|chr11:120451564-120451565|-/C|frameshift_variant	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3688354492188	2	633.373558	1264.73256	-4.8823	-0.0030923	-1.8485	-0.0011708	-6.7309	-0.0042631	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.71498	1	13044	13044		24.519	0	1	765700			38151	8658	31474	31498	41505	41505					0.11078571376151558
MKHQGTDM	8	Unmodified	_MKHQGTDM_					0	0	0		tr|A0A553STS3|A0A553STS3_NIACI3-hydroxyacyl-CoAdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_05460PE=4SV=1	tr|A0A553STS3|A0A553STS3_NIACI3-hydroxyacyl-CoAdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_05460PE=4SV=1	tr|A0A553STS3|A0A553STS3_NIACI3-hydroxyacyl-CoAdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_05460PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.6027526855469	2	474.207312	946.400072	-0.23782	-0.00011277	2.379	0.0011281	2.1412	0.0010154	474.2082372070843	48.74	0.35488	48.74	48.585	48.94	0					12	7	2	0	0	0	0.028476	1	3607	3607		37.159	12.64	1	69670			38152	34526	31475	31499	41506	41506					-0.07527251299904947
MKHSVQIMK	9	Unmodified	_MKHSVQIMK_					0	0	0		tr|A0A553SGY0|A0A553SGY0_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11790PE=4SV=1	tr|A0A553SGY0|A0A553SGY0_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11790PE=4SV=1	tr|A0A553SGY0|A0A553SGY0_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11790PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	551.298095703125	2	551.299004	1100.58346	-0.79159	-0.0004364	-0.20502	-0.00011303	-0.99662	-0.00054943	551.2988335963263	28.863	0.34911	28.863	28.688	29.037	0					13	6	3	0	0	0	0.44568	1	985	985		47.657	4.7931	1	153170			38153	33207	31476	31500	41507	41507					0.03718722481767145
MKIGNEEVEM	10	Unmodified	_MKIGNEEVEM_					0	0	0			REV__nc|ENSG00000178568|Q15303-4|ERBB4	REV__nc|ENSG00000178568|Q15303-4|ERBB4	MULTI-MSMS	OvCa9_classI_Rep3	3	590.2676391601562	2	590.272849	1178.53115	-7.705	-0.0045481	0.67006	0.00039552	-7.035	-0.0041526	590.2732006658329	159.89	2.9332	158.56	157.96	160.89	-1.3316					148	58	4	0	0	0	0.75313	1	13993	13993		24.519	0.31644	1	239760	+		38154	22066	31477	31501	41508	41508					-0.05097905442539741
MKIKLKEVN	9	Unmodified	_MKIKLKEVN_					0	0	0			REV__tr|A0A553SHY1|A0A553SHY1_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_13820PE=4SV=1	REV__tr|A0A553SHY1|A0A553SHY1_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_13820PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.8342895507812	2	551.836277	1101.658	-0.20291	-0.00011197	-3.2788	-0.0018093	-3.4817	-0.0019213	551.8344006629158	102.04	1.2572	99.84	99.522	100.78	-2.1994					65	23	4	0	0	0	0.44568	1	9222	9222		47.657	1.6851	1	458490	+		38155	29853	31478	31502	41509	41509					0.11123808564775572
MKILIQEE	8	Unmodified	_MKILIQEE_					0	0	0		tr|A0A7D6VTB3|A0A7D6VTB3_9CLOTendopeptidaseLaOS=ClostridiumintestinaleOX=36845GN=HZF06_16610PE=3SV=1	tr|A0A7D6VTB3|A0A7D6VTB3_9CLOTendopeptidaseLaOS=ClostridiumintestinaleOX=36845GN=HZF06_16610PE=3SV=1	tr|A0A7D6VTB3|A0A7D6VTB3_9CLOTendopeptidaseLaOS=ClostridiumintestinaleOX=36845GN=HZF06_16610PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	502.2784423828125	2	502.27826	1002.54197	0.60327	0.00030301	-2.3495	-0.0011801	-1.7463	-0.00087711	502.2765913135013	159.83	0.39461	159.83	159.66	160.06	0					17	7	3	0	0	0	0.73494	1	18734	18734		34.173	0.65696	1	59322			38156	35103	31479	31503	41510	41510					0.040798649940711584
MKIPTYKF	8	Unmodified	_MKIPTYKF_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	OvCa9_classI_Rep3	3	514.2874755859375	2	514.285889	1026.55722	0.90027	0.000463	1.4189	0.00072972	2.3192	0.0011927	514.2865443000921	129.76	0.8905	128.65	128.39	129.28	-1.1121					36	17	3	0	0	0	0.56195	1	10274	10274		71.296	7.9894	1	70207			38157	5455	31480	31504	41511	41511					0.04500776581926402
MKISAMGIR	9	Unmodified	_MKISAMGIR_					0	0	0			REV__nc|ENSG00000140284|O14975-2|SLC27A2	REV__nc|ENSG00000140284|O14975-2|SLC27A2	MULTI-MSMS	OvCa99_classI_Rep5	1	503.7841491699219	2	503.780447	1005.54634	-0.67701	-0.00034106	3.8318	0.0019304	3.1548	0.0015893	503.78204051197014	70.38	0.91629	70.38	69.883	70.8	0					75	22	4	0	0	0	0.23241	1	6749	6749		70.816	6.6089	1	3737700	+		38158	19659	31481	31505	41512	41512					0.043790509359837415
MKISAMGIR	9	Unmodified	_MKISAMGIR_					0	0	0			REV__nc|ENSG00000140284|O14975-2|SLC27A2	REV__nc|ENSG00000140284|O14975-2|SLC27A2	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	503.780447	1005.54634	-0.67701	-0.00034106	3.8318	0.0019304	3.1548	0.0015893	503.78204051197014	70.38	0.91629	70.38	69.883	70.8	0	0	0	NaN	70.816	75	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3737700	+		38159	19659	31481	31505							0.043790509359837415
MKIVSYFC	8	Carbamidomethyl (C)	_MKIVSYFC(Carbamidomethyl (C))_	MKIVSYFC(1)		MKIVSYFC(120)		0	1	0			REV__nc|ENSG00000044459|Q9NXG0-3|CNTLN	REV__nc|ENSG00000044459|Q9NXG0-3|CNTLN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.27099609375	2	524.253731	1046.49291	-1.228	-0.0006438	-0.052971	-2.777E-05	-1.281	-0.00067157	524.2541533418773	120.87	0.45217	119.52	119.39	119.85	-1.3479					10	8	2	0	0	0	0.028476	1	11372	11372		119.56	13.142	1	8732.1	+		38160	28712	31482	31506	41513	41513	351				-0.02847746566544629
MKKAAVIIQT	10	Unmodified	_MKKAAVIIQT_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OvCa9_classI_Rep2	2	551.8327026367188	2	551.836277	1101.658	-0.25095	-0.00013848	-3.6762	-0.0020287	-3.9272	-0.0021672	551.8341547217644	100.17	1.3886	99.337	99.014	100.4	-0.83051					70	27	4	0	0	0	0.52439	1	9153	9153		51.193	3.5354	1	447510			38161	1348	31483	31507	41514	41514					0.11123808564775572
MKKAAVIIQT	10	Unmodified	_MKKAAVIIQT_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OvCa9_classI_Rep3	3	551.8336791992188	2	551.836277	1101.658	-1.4468	-0.00079841	-1.7713	-0.00097749	-3.2182	-0.0017759	551.8352363148457	101.35	1.3104	99.741	99.446	100.76	-1.6053					67	24	4	0	0	0	0.26424	1	6923	6923		85.161	10.118	1	510450			38162	1348	31483	31507	41515	41515					0.11123808564775572
MKKAAVIIQT	10	Unmodified	_MKKAAVIIQT_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.8348388671875	2	551.836277	1101.658	-0.20291	-0.00011197	-3.2788	-0.0018093	-3.4817	-0.0019213	551.8344006629158	102.04	1.2572	99.84	99.522	100.78	-2.1994					65	23	4	0	0	0	0.44431	1	9208	9208		62.107	7.3311	1	458490			38163	1348	31483	31507	41516	41516					0.11123808564775572
MKKDRSIV	8	Unmodified	_MKKDRSIV_					0	0	0		tr|A0A7D6W0G4|A0A7D6W0G4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23650PE=4SV=1	tr|A0A7D6W0G4|A0A7D6W0G4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23650PE=4SV=1	tr|A0A7D6W0G4|A0A7D6W0G4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23650PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	488.783447265625	2	488.784044	975.553536	2.219	0.0010846	-3.4813	-0.0017016	-1.2624	-0.00061703	488.78225375256346	90.484	0.99218	90.484	90.143	91.135	0					57	24	4	0	0	0	0.45246	1	9689	9689		82.305	5.4584	1	5956200			38164	35378	31484	31508	41517	41517					0.06478106808060602
MKKIQVCVV	9	Unmodified	_MKKIQVCVV_					0	0	0		tr|A0A553SKY1|A0A553SKY1_NIACIStage0sporulationproteinAOS=NialliacirculansOX=1397GN=spo0APE=4SV=1	tr|A0A553SKY1|A0A553SKY1_NIACIStage0sporulationproteinAOS=NialliacirculansOX=1397GN=spo0APE=4SV=1	tr|A0A553SKY1|A0A553SKY1_NIACIStage0sporulationproteinAOS=NialliacirculansOX=1397GN=spo0APE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	524.30908203125	2	524.306298	1046.59804	-1.067	-0.00055945	3.1934	0.0016743	2.1264	0.0011149	524.3078003096332	117.55	1.8829	116.51	116.04	117.93	-1.0324					72	37	5	0	0	0	0.33652	1	8836	8836		58.782	3.2778	1	1005800			38165	33664	31485	31509	41518	41518					0.07660794629896372
MKKKMLTIT	9	Oxidation (M)	_MKKKM(Oxidation (M))LTIT_		MKKKM(1)LTIT		M(-40)KKKM(40)LTIT	0	0	1		ENST00000392396.7_2_3:195802047-195802140:-|nuORF	ENST00000392396.7_2_3:195802047-195802140:-|nuORF	ENST00000392396.7_2_3:195802047-195802140:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	555.3271484375	2	555.324688	1108.63482	2.5192	0.001399	3.5425	0.0019672	6.0616	0.0033662	555.3266204801115	94.98	4.6235	94.98	93.883	98.506	0					299	108	6	0	0	0	0.1944	1	10265	10265		77.318	14.011	2	31877000			38166	11222	31486	31510	41519	41519		318			0.08485046455803058
MKKKTVCTLN	10	Unmodified	_MKKKTVCTLN_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;SCAF11|p.K104Nfs*3|1|0.47|ENSG00000139218|chr12:45948523-45948523|T/-|frameshift_variant;ENST00000474828.1_1_12:46355467-46384201:-|nuORF;ENST00000547018.5_1_12:46345524-46385838:-|nuORF	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-MSMS	OvCa99_classI_Rep5	1	583.3272705078125	2	583.325219	1164.63589	-1.1826	-0.00068987	1.1371	0.00066332	-0.045512	-2.6548E-05	583.325884077045	28.083	0.39915	28.083	27.941	28.34	0					11	7	2	0	0	0	0.71173	1	895	895		29.17	0.020503	1	67546			38167	4757	31487	31511	41520	41520					0.06015260824710822
MKKLEKSK	8	Unmodified	_MKKLEKSK_					0	0	0			REV__nc|ENSG00000073614|P29375-2|KDM5A	REV__nc|ENSG00000073614|P29375-2|KDM5A	MULTI-MSMS	OvCa9_classI_Rep2	2	496.304443359375	2	496.30207	990.589587	0.81447	0.00040422	2.9595	0.0014688	3.7739	0.001873	496.3034328484854	131.27	1.6371	131.04	129.81	131.45	-0.22696					68	32	3	0	0	0	0.75208	1	12943	12943		17.365	1.7232	1	62409	+		38168	16938	31488	31512	41521	41521					0.09391563984934237
MKKLTVKCP	9	Unmodified	_MKKLTVKCP_					0	0	0			REV__Harlequin-int_dup161|chr4:91353598-91357139:-|1.3911466287095282|0.2716421829311496|2.36|422.0|14|1|sense	REV__Harlequin-int_dup161|chr4:91353598-91357139:-|1.3911466287095282|0.2716421829311496|2.36|422.0|14|1|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.3070068359375	2	524.306298	1046.59804	-1.3343	-0.00069956	1.6935	0.00088791	0.35923	0.00018835	524.3077292741302	117.79	1.8803	116.44	116	117.88	-1.3444					65	35	2	0	0	0	0.27001	1	11030	11030		66.429	0.6261	1	1315600	+		38169	28172	31489	31513	41522	41522					0.07660794629873635
MKKMHEVN	8	Unmodified	_MKKMHEVN_					0	0	0			REV__ENSG00000137338|ENST00000682144|PGBD1	REV__ENSG00000137338|ENST00000682144|PGBD1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.7546081542969	2	508.75443	1015.49431	0.41575	0.00021151	-1.6229	-0.00082566	-1.2072	-0.00061415	508.75357635192	71.978	0.45834	71.978	71.749	72.208	0					25	10	3	0	0	0	0.58851	1	6985	6985		66.429	0	1	1500000	+		38170	19446	31490	31514	41523	41523					-0.012821124777701698
MKKNNIKVTI	10	Oxidation (M)	_M(Oxidation (M))KKNNIKVTI_		M(1)KKNNIKVTI		M(60)KKNNIKVTI	0	0	1		tr|A0A553SKK6|A0A553SKK6_NIACIYqeGfamilyHADIIIA-typephosphataseOS=NialliacirculansOX=1397GN=CEQ21_18835PE=4SV=1	tr|A0A553SKK6|A0A553SKK6_NIACIYqeGfamilyHADIIIA-typephosphataseOS=NialliacirculansOX=1397GN=CEQ21_18835PE=4SV=1	tr|A0A553SKK6|A0A553SKK6_NIACIYqeGfamilyHADIIIA-typephosphataseOS=NialliacirculansOX=1397GN=CEQ21_18835PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	402.23980712890625	3	402.240919	1203.70093	1.3935	0.00056051	-3.9019	-0.0015695	-2.5085	-0.001009	402.23921500569236	71.259	2.0878	68.657	68.229	70.317	-2.6023					93	41	4	0	0	0	0.45953	1	3315	3315		59.931	14.909	1	386150			38171	33626	31491	31515	41524	41524		743			0.10722578622198853
MKKNNIKVTI	10	Oxidation (M)	_M(Oxidation (M))KKNNIKVTI_					0	0	1		tr|A0A553SKK6|A0A553SKK6_NIACIYqeGfamilyHADIIIA-typephosphataseOS=NialliacirculansOX=1397GN=CEQ21_18835PE=4SV=1	tr|A0A553SKK6|A0A553SKK6_NIACIYqeGfamilyHADIIIA-typephosphataseOS=NialliacirculansOX=1397GN=CEQ21_18835PE=4SV=1	tr|A0A553SKK6|A0A553SKK6_NIACIYqeGfamilyHADIIIA-typephosphataseOS=NialliacirculansOX=1397GN=CEQ21_18835PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	402.240919	1203.70093	2.0577	0.0008277	-4.7165	-0.0018972	-2.6588	-0.0010695	402.2388991014863	71.041	1.561	68.492	67.987	69.548	-2.5486	-0.1736	-0.00085052	NaN	59.931	75	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	275920			38172	33626	31491	31515				743			0.10722578622198853
MKKNNIKVTI	10	Oxidation (M)	_M(Oxidation (M))KKNNIKVTI_					0	0	1		tr|A0A553SKK6|A0A553SKK6_NIACIYqeGfamilyHADIIIA-typephosphataseOS=NialliacirculansOX=1397GN=CEQ21_18835PE=4SV=1	tr|A0A553SKK6|A0A553SKK6_NIACIYqeGfamilyHADIIIA-typephosphataseOS=NialliacirculansOX=1397GN=CEQ21_18835PE=4SV=1	tr|A0A553SKK6|A0A553SKK6_NIACIYqeGfamilyHADIIIA-typephosphataseOS=NialliacirculansOX=1397GN=CEQ21_18835PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	402.240919	1203.70093	0.75619	0.00030417	-3.606	-0.0014505	-2.8498	-0.0011463	402.2394198154975	72.292	1.2626	68.848	68.329	69.591	-3.4443	0.1825	0.00048958	NaN	59.931	55	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	292490			38173	33626	31491	31515				743			0.10722578622198853
MKKRVAAELE	10	Unmodified	_MKKRVAAELE_					0	0	0			REV__RPAP2|p.I52M|1|0.06|ENSG00000122484|chr1:92301512-92301512|T/G|missense_variant	REV__RPAP2|p.I52M|1|0.06|ENSG00000122484|chr1:92301512-92301512|T/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	588.3065185546875	2	587.834265	1173.65398	-0.56841	-0.00033413	0.75478	0.00044369	0.18637	0.00010955	587.8345508485004	64.403	1.2593	61.678	61.181	62.44	-2.7245					45	23	3	0	0	0	0.026635	1	4858	4858		66.429	13.078	1	60475	+		38174	29337	31492	31516	41525	41525					0.07409719071051768
MKKSIVNKLLS	11	Unmodified	_MKKSIVNKLLS_					0	0	0			REV__ENSG00000248713|ENST00000511828|C4orf54	REV__ENSG00000248713|ENST00000511828|C4orf54	MULTI-MSMS	OvCa9_classI_Rep4_	4	420.9279479980469	3	420.928453	1259.76353	-1.1533	-0.00048544	-1.5895	-0.00066907	-2.7428	-0.0011545	420.92781623886106	70.392	1.7502	66.911	66.589	68.339	-3.4812					123	35	5	0	0	0	0.29489	1	5344	5344		68.786	11.637	1	1320300			38175	23485	31493	31517	41526	41526					0.14403724690396302
MKKSLNQP	8	Unmodified	_MKKSLNQP_					0	0	0		ENST00000537927.5_1_12:27807694-27808082:+|nuORF;ENST00000228425.10_2_12:27807694-27809567:+|nuORF	ENST00000537927.5_1_12:27807694-27808082:+|nuORF	ENST00000537927.5_1_12:27807694-27808082:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.28399658203125	2	473.262945	944.511337	0.031648	1.4978E-05	-3.0944	-0.0014645	-3.0627	-0.0014495	473.2614588030939	71.528	0.45016	71.528	71.427	71.877	0					18	10	2	0	0	0	0.028476	1	6916	6916		65.803	17.888	1	515800			38176	9710	31494	31518	41527	41527					0.03686131399695114
MKKTLENQS	9	Unmodified	_MKKTLENQS_					0	0	0		tr|A0A553SHM0|A0A553SHM0_NIACItRNAuridine5-carboxymethylaminomethylmodificationenzymeMnmGOS=NialliacirculansOX=1397GN=mnmGPE=3SV=1	tr|A0A553SHM0|A0A553SHM0_NIACItRNAuridine5-carboxymethylaminomethylmodificationenzymeMnmGOS=NialliacirculansOX=1397GN=mnmGPE=3SV=1	tr|A0A553SHM0|A0A553SHM0_NIACItRNAuridine5-carboxymethylaminomethylmodificationenzymeMnmGOS=NialliacirculansOX=1397GN=mnmGPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.31201171875	2	539.781699	1077.54884	1.6366	0.00088342	0.57962	0.00031287	2.2162	0.0011963	539.7827168686975	129.97	0.28561	129.97	129.82	130.1	0					8	5	2	0	0	0	0.027462	1	15075	15075		30.318	1.1682	1	64382			38177	33285	31495	31519	41528	41528					0.013171778746482232
MKKTVKNSAKL	11	Oxidation (M)	_M(Oxidation (M))KKTVKNSAKL_		M(1)KKTVKNSAKL		M(84)KKTVKNSAKL	0	0	1		tr|A0A7D6VRX5|A0A7D6VRX5_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_07385PE=4SV=1	tr|A0A7D6VRX5|A0A7D6VRX5_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_07385PE=4SV=1	tr|A0A7D6VRX5|A0A7D6VRX5_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_07385PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	632.3751831054688	2	632.376297	1262.73804	-1.8152	-0.0011479	-1.0918	-0.00069043	-2.907	-0.0018383	632.3755521583494	84.187	2.0123	82.64	82.326	84.338	-1.5462					123	39	5	0	0	0	0.17265	1	7255	7255		83.647	10.768	1	596790			38178	34963	31496	31520	41529	41529		770			0.11718250167950828
MKKTVKNSAKL	11	Oxidation (M)	_M(Oxidation (M))KKTVKNSAKL_		M(1)KKTVKNSAKL		M(85)KKTVKNSAKL	0	0	1		tr|A0A7D6VRX5|A0A7D6VRX5_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_07385PE=4SV=1	tr|A0A7D6VRX5|A0A7D6VRX5_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_07385PE=4SV=1	tr|A0A7D6VRX5|A0A7D6VRX5_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_07385PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	632.376220703125	2	632.376297	1262.73804	1.4837	0.00093827	-4.3569	-0.0027552	-2.8732	-0.0018169	632.3734812887993	85.768	1.6793	83.122	82.8	84.48	-2.6463					104	33	5	0	0	0	0.16394	1	7237	7237		84.817	10.652	1	726040			38179	34963	31496	31520	41530	41530		770			0.11718250167950828
MKLAGHFTQD	10	Unmodified	_MKLAGHFTQD_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5;PEX5|p.D85Efs*2|1|0.22|ENSG00000139197|chr12:7191296-7191297|-/G|frameshift_variant;ENST00000535486.2_1_12:7342729-7343282:+|nuORF	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	MULTI-SECPEP	OvCa9_classI_Rep2	2	573.3221435546875	2	574.281866	1146.54918	-1.8567	-0.0010663	-4.4084	-0.0025317	-6.2651	-0.003598	574.2795422148937	102.69	0.69112	102	101.44	102.13	-0.68459					25	13	3	0	0	0	0.026782	1	9431	9431		45.972	14.442	1	20770			38180	4755	31497	31521	41531	41531					-0.018234024055118425
MKLKERVLI	9	Unmodified	_MKLKERVLI_					0	0	0		KHDRBS1|p.A312Gfs*56|1|0.06|ENSG00000121774|chr1:32037857-32037858|-/G|frameshift_variant;ENST00000307714.12_1_1:32479575-32503673:+|nuORF;nc|ENSG00000121774|Q07666-2|KHDRBS1;ENSG00000121774|ENST00000327300|KHDRBS1;nc|ENSG00000121774|Q07666-3|KHDRBS1	KHDRBS1|p.A312Gfs*56|1|0.06|ENSG00000121774|chr1:32037857-32037858|-/G|frameshift_variant	KHDRBS1|p.A312Gfs*56|1|0.06|ENSG00000121774|chr1:32037857-32037858|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	565.3624877929688	2	565.359919	1128.70529	1.1665	0.00065949	4.4697	0.002527	5.6362	0.0031865	565.3622496510778	122.79	1.6628	121.77	121.48	123.14	-1.0286					74	31	4	0	0	0	0.40818	1	9456	9456		51.193	1.6567	1	327540			38181	3499	31498	31522	41532	41532					0.14608087835767947
MKLKKQVTVC	10	Unmodified	_MKLKKQVTVC_					0	0	0		MAN2A2|p.E478Gfs*12|1|0.12|ENSG00000196547|chr15:90910148-90910148|A/-|frameshift_variant;ENST00000560192.5_1_15:91447248-91454469:+|nuORF;nc|ENSG00000196547|P49641-2|MAN2A2;MAN2A2|p.S842Lfs*8|1|0.14|ENSG00000196547|chr15:90912929-90912930|-/C|frameshift_variant;ENSG00000196547.15,MAN2A2,chr15,+,I1.1,90902527,90902694|104|4.61|1|intron;nc|ENSG00000196547|P49641-1|MAN2A2;ENSG00000196547|ENST00000559717|MAN2A2;ENSG00000196547.15,MAN2A2,chr15,+,I1.1,90902527,90902694|104|4.61|2|intron;ENSG00000196547.15,MAN2A2,chr15,+,I1.1,90902527,90902694|104|4.61|3|intron	MAN2A2|p.E478Gfs*12|1|0.12|ENSG00000196547|chr15:90910148-90910148|A/-|frameshift_variant	MAN2A2|p.E478Gfs*12|1|0.12|ENSG00000196547|chr15:90910148-90910148|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3427124023438	2	589.343412	1176.67227	-5.1334	-0.0030254	4.2954	0.0025314	-0.83808	-0.00049392	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.73378	1	12457	12457		26.693	2.4902	1	589610			38182	8623	31499	31523	41533	41533					0.09100137721407009
MKLLDQLPK	9	Unmodified	_MKLLDQLPK_					0	0	0			REV__ENST00000199389.10_1_7:6064110-6064239:-|nuORF	REV__ENST00000199389.10_1_7:6064110-6064239:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.3220825195312	2	543.323002	1084.63145	-1.4553	-0.00079071	1.426	0.00077479	-0.029303	-1.5921E-05	543.323595205507	120.55	1.132	119.21	118.93	120.06	-1.3444					48	21	3	0	0	0	0.34132	1	11356	11356		58.23	3.5076	1	226840	+		38183	23694	31500	31524	41534	41534					0.09252119673442394
MKLLGPLPM	9	Unmodified	_MKLLGPLPM_					0	0	0			REV__ENST00000512061.5_1_5:16741933-16741987:-|nuORF	REV__ENST00000512061.5_1_5:16741933-16741987:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.7441101074219	2	500.290117	998.56568	0.26603	0.00013309	-0.48277	-0.00024153	-0.21674	-0.00010843	500.2897933195831	73.889	0.4178	73.889	73.717	74.135	0					18	10	3	0	0	0	0.027456	1	7256	7256		38.806	13.232	1	662800	+		38184	26966	31501	31525	41535	41535					0.06634007226887206
MKLLGPLPM	9	Unmodified	_MKLLGPLPM_					0	0	0			REV__ENST00000512061.5_1_5:16741933-16741987:-|nuORF	REV__ENST00000512061.5_1_5:16741933-16741987:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	500.290117	998.56568	-0.97267	-0.00048662	0.77142	0.00038593	-0.20126	-0.00010069	500.2903732618521	75.649	1.6104	73.795	73.271	74.881	-1.854	0.032848	0.00072446	NaN	23.042	53	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82265	+		38185	26966	31501	31525							0.06634007226887206
MKLLGPLPM	9	Unmodified	_MKLLGPLPM_					0	0	0			REV__ENST00000512061.5_1_5:16741933-16741987:-|nuORF	REV__ENST00000512061.5_1_5:16741933-16741987:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	500.290117	998.56568	-0.65439	-0.00032739	-0.046761	-2.3394E-05	-0.70115	-0.00035078	500.29010725135	76.542	1.3375	73.603	73.365	74.703	-2.9389	-0.15937	-9.4188E-05	NaN	23.042	48	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271150	+		38186	26966	31501	31525							0.06634007226887206
MKLNPKICR	9	Unmodified	_MKLNPKICR_					0	0	0			REV__nc|ENSG00000196586|Q9UM54-5|MYO6	REV__nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-SECPEP	OvCa9_classI_Rep3	3	551.8486938476562	2	551.814822	1101.61509	-1.3418	-0.00074045	-1.9213	-0.0010602	-3.2632	-0.0018007	551.813638613847	101.6	1.1517	99.998	99.814	100.97	-1.6053					27	21	2	0	0	0	0.027418	1	7004	7004		58.782	0	1	38517	+		38187	22846	31502	31526	41536	41536					0.06834715235686417
MKLQNKVD	8	Unmodified	_MKLQNKVD_					0	0	0			REV__tr|A0A553SHV1|A0A553SHV1_NIACILipoproteinOS=NialliacirculansOX=1397GN=CEQ21_13680PE=4SV=1	REV__tr|A0A553SHV1|A0A553SHV1_NIACILipoproteinOS=NialliacirculansOX=1397GN=CEQ21_13680PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	488.26953125	2	488.268227	974.521901	0.077218	3.7703E-05	0.48296	0.00023581	0.56017	0.00027352	488.26841802255313	72.811	1.8195	72.811	72.125	73.945	0					107	45	4	0	0	0	0.23117	1	7121	7121		119.56	7.9085	1	17057000	+		38188	29842	31503	31527	41537	41537					0.033621140541072236
MKLQNKVD	8	Unmodified	_MKLQNKVD_					0	0	0			REV__tr|A0A553SHV1|A0A553SHV1_NIACILipoproteinOS=NialliacirculansOX=1397GN=CEQ21_13680PE=4SV=1	REV__tr|A0A553SHV1|A0A553SHV1_NIACILipoproteinOS=NialliacirculansOX=1397GN=CEQ21_13680PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	488.268227	974.521901	-0.94392	-0.00046088	7.547	0.003685	6.6031	0.0032241	488.27216755396967	75.235	0.28651	72.825	72.584	72.87	-2.4106	0.0066077	0.0053128	NaN	119.56	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8336	+		38189	29842	31503	31527							0.033621140541072236
MKLREMAEH	9	Unmodified	_MKLREMAEH_					0	0	0			REV__ENSG00000143614|ENST00000368655|GATAD2B	REV__ENSG00000143614|ENST00000368655|GATAD2B	MULTI-MSMS	OvCa9_classI_Rep2	2	572.7841796875	2	572.783718	1143.55288	-1.9865	-0.0011378	3.9491	0.002262	1.9626	0.0011241	572.7859809262638	102.03	3.5096	101.27	100.67	104.18	-0.76401					164	70	5	0	0	0	0.1944	2	9394	9382;9394		77.318	3.0625	1	1099900	+		38190	19856	31504	31528	41538;41539	41539					-0.013150559032965248
MKLRMWPNN	9	Unmodified	_MKLRMWPNN_					0	0	0		ENST00000229329.6_1_12:22208105-22208192:+|nuORF	ENST00000229329.6_1_12:22208105-22208192:+|nuORF	ENST00000229329.6_1_12:22208105-22208192:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	594.3273315429688	2	595.302078	1188.5896	-0.60591	-0.0003607	2.3483	0.001398	1.7424	0.0010373	595.3033835081665	71.702	1.6098	68.246	67.776	69.386	-3.4563					71	32	4	0	0	0	0.027462	1	5471	5471		20.947	0	1	626140			38191	9717	31505	31529	41540	41540					0.002852407132877488
MKLRQKRSS	9	Unmodified	_MKLRQKRSS_					0	0	0		ENST00000560919.5_1_15:80181533-80181635:-|nuORF	ENST00000560919.5_1_15:80181533-80181635:-|nuORF	ENST00000560919.5_1_15:80181533-80181635:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3298950195312	2	567.332224	1132.6499	-3.474	-0.0019709	-0.82257	-0.00046667	-4.2966	-0.0024376	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.69123	1	12260	12260		20.947	1.8434	1	458690			38192	13743	31506	31530	41541	41541					0.08887674367997533
MKLRSESR	8	Unmodified	_MKLRSESR_					0	0	0			REV__ENST00000404977.6_1_1:204951067-204978869:+|nuORF	REV__ENST00000404977.6_1_1:204951067-204978869:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.7783508300781	2	503.776751	1005.53895	0.4913	0.0002475	3.2787	0.0016517	3.77	0.0018992	503.77822195567444	37.131	2.2949	34.239	32.696	34.991	-2.8925					103	45	3	0	0	0	0.74754	1	1361	1361		27.882	0	1	100360	+		38193	25436	31507	31531	41542	41542					0.03640034659918001
MKLYGNDIE	9	Unmodified	_MKLYGNDIE_					0	0	0			REV__ACOX1|p.L494Ffs*32|1|0.02|ENSG00000161533|chr17:75949597-75949598|-/TGGGCTCCCA|frameshift_variant	REV__ACOX1|p.L494Ffs*32|1|0.02|ENSG00000161533|chr17:75949597-75949598|-/TGGGCTCCCA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	541.761474609375	2	541.762975	1081.5114	1.2837	0.00069544	-4.2766	-0.0023169	-2.9929	-0.0016214	541.7603990762507	138.7	0.86693	138.7	138.4	139.27	0					37	17	3	0	0	0	0.44568	1	16212	16212		47.657	1.7054	1	494510	+		38194	15557	31508	31532	41543	41543					-0.026099133909610828
MKMIGSEVPG	10	Unmodified	_MKMIGSEVPG_					0	0	0			REV__tr|A0A553STS8|A0A553STS8_NIACIDUF2088domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05545PE=4SV=1	REV__tr|A0A553STS8|A0A553STS8_NIACIDUF2088domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05545PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.813720703125	2	524.76192	1047.50929	1.5718	0.00082482	0.83286	0.00043705	2.4047	0.0012619	524.7621504602565	117.48	0.61261	117.48	117.18	117.79	0					22	12	2	0	0	0	0.026551	1	13431	13431		69.628	30.375	1	116310	+		38195	31006	31509	31533	41544	41544					-0.012566654004103839
MKMKIFKN	8	Unmodified	_MKMKIFKN_					0	0	0		nc|ENSG00000168116|Q9HCI6-2|KIAA1586;ENSG00000168116|ENST00000370733|KIAA1586	nc|ENSG00000168116|Q9HCI6-2|KIAA1586	nc|ENSG00000168116|Q9HCI6-2|KIAA1586	MULTI-MSMS	OvCa9_classI_Rep2	2	520.2926635742188	2	520.293191	1038.57183	-0.96898	-0.00050415	-0.21823	-0.00011355	-1.1872	-0.0006177	520.2929878067442	117.73	1.1913	117.58	117.19	118.38	-0.14754					43	23	2	0	0	0	0.68714	1	11298	11298		45.952	10.751	1	211520			38196	6874	31510	31534	41545	41545					0.0540852545841517
MKMKMMTII	9	2 Oxidation (M)	_M(Oxidation (M))KMKM(Oxidation (M))MTII_		M(0.977)KM(0.186)KM(0.798)M(0.039)TII		M(16)KM(-6.8)KM(6.8)M(-13)TII	0	0	2			REV__ENST00000540319.5_1_12:67692794-67696138:+|nuORF	REV__ENST00000540319.5_1_12:67692794-67696138:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	579.7915649414062	2	579.791309	1157.56806	0.61262	0.00035519	-2.117	-0.0012274	-1.5044	-0.00087225	579.7900273389661	156.94	0.85097	156.94	156.6	157.45	0					37	16	4	0	0	0	0.50149	1	18406	18406		42.396	7.2441	6	123850	+		38197	27347	31511	31535	41546	41546		605;606			-0.004416484219291306
MKMKNRTV	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MKMKNRTV_					1	0	0		ENST00000395711.8_1_4:76892580-76894507:-|nuORF	ENST00000395711.8_1_4:76892580-76894507:-|nuORF	ENST00000395711.8_1_4:76892580-76894507:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	525.2835693359375	2	525.283354	1048.55216	-0.52192	-0.00027415	2.9165	0.001532	2.3946	0.0012578	525.2848982861796	114.53	2.2405	113.48	112.84	115.08	-1.055					123	44	4	0	0	0	0.60331	1	8488	8488		63.306	15.649	1	908300			38198	11296	31512	31536	41547	41547					0.029821494476664157
MKMRLLNKSL	10	Unmodified	_MKMRLLNKSL_					0	0	0			REV__ENST00000566748.1_1_16:82197734-82203804:-|nuORF	REV__ENST00000566748.1_1_16:82197734-82203804:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.8908996582031	3	411.910516	1232.70972	0.42323	0.00017433	2.0149	0.00082996	2.4381	0.0010043	411.9111552203724	59.819	0.66533	59.819	59.573	60.238	0					40	16	3	0	0	0	0.027056	1	5150	5150		6.3209	0	1	1402900	+		38199	27706	31513	31537	41548	41548					0.10267228987049748
MKMTRIRI	8	Unmodified	_MKMTRIRI_					0	0	0			REV__nc|ENSG00000120156|Q02763-2|TEK	REV__nc|ENSG00000120156|Q02763-2|TEK	MULTI-MSMS	OvCa99_classI_Rep5	1	524.813720703125	2	524.809539	1047.60453	1.5557	0.00081646	2.9132	0.0015289	4.469	0.0023454	524.8109920290574	117.3	1.2543	117.3	117	118.25	0					47	26	3	0	0	0	0.59904	1	13431	13431		64.207	0.67341	1	495220	+		38200	18487	31514	31538	41549	41549					0.08262732581260934
MKNGLLLIVV	10	Unmodified	_MKNGLLLIVV_					0	0	0			REV__ENSG00000255587|ENST00000612677|RAB44	REV__ENSG00000255587|ENST00000612677|RAB44	MULTI-MSMS	OvCa99_classI_Rep5	1	550.3453979492188	2	550.34902	1098.68349	0.53002	0.00029169	-1.9824	-0.001091	-1.4524	-0.00079934	550.3478385445093	159.18	1.1164	159.18	158.94	160.06	0					51	22	3	0	0	0	0.67931	1	18724	18724		32.812	2.3088	1	290840	+		38201	23531	31515	31539	41550	41550					0.13809283087221047
MKNKILWR	8	Unmodified	_MKNKILWR_					0	0	0			REV__nc|ENSG00000064651|P55011-3|SLC12A2	REV__nc|ENSG00000064651|P55011-3|SLC12A2	MULTI-MSMS	OvCa99_classI_Rep5	1	544.8209838867188	2	544.823504	1087.63245	1.7238	0.00093917	-2.9987	-0.0016338	-1.2749	-0.00069459	544.8217438691742	118.57	1.0369	118.57	118.11	119.15	0					60	21	4	0	0	0	0.50674	1	13570	13570		76.847	3.9674	1	557490	+		38202	16773	31516	31540	41551	41551					0.09214378832984949
MKPRGRPN	8	Unmodified	_MKPRGRPN_					0	0	0			REV__ENSG00000100813|ENST00000605057|ACIN1	REV__ENSG00000100813|ENST00000605057|ACIN1	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.2822570800781	2	478.266353	954.518153	0.20068	9.5978E-05	2.855	0.0013655	3.0557	0.0014615	478.26759925316276	81.216	1.0145	79.568	79.164	80.179	-1.6485					50	19	3	0	0	0	0.028476	1	6943	6943		65.803	0	1	195920	+		38203	17453	31517	31541	41552	41552					0.0390748907092302
MKPRVMKEA	9	Unmodified	_MKPRVMKEA_					0	0	0		ENSG00000152492|ENST00000392455|CCDC50;nc|ENSG00000152492|Q8IVM0|CCDC50	ENSG00000152492|ENST00000392455|CCDC50	ENSG00000152492|ENST00000392455|CCDC50	MULTI-SECPEP	OvCa9_classI_Rep2	2	544.8064575195312	2	545.299004	1088.58346	-0.50425	-0.00027497	0.69985	0.00038163	0.19559	0.00010666	545.8012539609108	77.534	1.3579	75.744	74.998	76.356	-1.7894					58	25	3	0	0	0	0.027462	1	6516	6516		34.173	11.13	1	47566			38204	5627	31518	31542	41553	41553					0.04270722481760458
MKPSSQPV	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MKPSSQPV_					1	0	0		ENST00000359904.7_1_17:66246440-66246943:+|nuORF	ENST00000359904.7_1_17:66246440-66246943:+|nuORF	ENST00000359904.7_1_17:66246440-66246943:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.231689453125	2	458.233853	914.453153	0.15484	7.0953E-05	-3.8798	-0.0017778	-3.7249	-0.0017069	458.23194107413076	112.48	1.2522	110.97	110.69	111.94	-1.5111					65	24	4	0	0	0	0.58851	1	10401	10401		66.429	8.618	1	402800			38205	10762	31519	31543	41554	41554					-0.007495502455867609
MKQAMIVVK	9	Unmodified	_MKQAMIVVK_					0	0	0			REV__tr|A0A7D6VPA6|A0A7D6VPA6_9CLOTIron-sulfurclustercarrierproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21945PE=3SV=1	REV__tr|A0A7D6VPA6|A0A7D6VPA6_9CLOTIron-sulfurclustercarrierproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21945PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.8054809570312	2	524.306298	1046.59804	-1.3343	-0.00069956	1.6935	0.00088791	0.35923	0.00018835	524.3077292741302	117.79	1.8803	116.44	116	117.88	-1.3444					65	35	2	0	0	0	0.40667	1	11078	11078		51.335	3.3759	1	1315600	+		38206	31238	31520	31544	41555	41555					0.07660794629873635
MKQNKVPR	8	Unmodified	_MKQNKVPR_					0	0	0		ENSG00000165325|ENST00000298050|DEUP1	ENSG00000165325|ENST00000298050|DEUP1	ENSG00000165325|ENST00000298050|DEUP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.82806396484375	2	500.789661	999.564769	-0.22514	-0.00011275	-3.8326	-0.0019193	-4.0577	-0.0020321	500.7874619446173	71.508	0.48415	71.508	71.308	71.792	0					17	11	2	0	0	0	0.028476	1	6917	6917		21.96	2.8564	1	708600			38207	6552	31521	31545	41556	41556					0.06496928902208765
MKRGYFLN	8	Unmodified	_MKRGYFLN_					0	0	0			REV__ENSG00000115020|ENST00000264380|PIKFYVE	REV__ENSG00000115020|ENST00000264380|PIKFYVE	MULTI-MSMS	OvCa99_classI_Rep5	1	514.7720947265625	2	514.770937	1027.52732	0.64387	0.00033144	0.37787	0.00019451	1.0217	0.00052596	514.7710277303935	158.44	0.84651	158.44	158.19	159.04	0					55	17	4	0	0	0	0.73626	1	18576	18576		33.516	0	1	422900	+		38208	18214	31522	31546	41557	41557					0.014658376366014636
MKRLQKGQK	9	Unmodified	_MKRLQKGQK_					0	0	0		ENSA-SEC22B|3|fusion;ENSA-SEC22B|2|fusion;nc|ENSG00000143420|O43768-6|ENSA;nc|ENSG00000143420|O43768-5|ENSA;nc|ENSG00000143420|O43768-2|ENSA;ENSG00000143420|ENST00000369014|ENSA	ENSA-SEC22B|3|fusion	ENSA-SEC22B|3|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	558.8402709960938	2	558.837143	1115.65973	1.1066	0.00061842	4.4686	0.0024972	5.5752	0.0031156	558.8394771772328	30.588	0.88633	27.878	27.706	28.592	-2.7097					39	17	3	0	0	0	0.46377	1	850	850		45.952	3.4775	1	114560			38209	798	31523	31547	41558	41558					0.1065286237339933
MKRQPLIF	8	Oxidation (M)	_M(Oxidation (M))KRQPLIF_		M(1)KRQPLIF		M(57)KRQPLIF	0	0	1			REV__LPIN1|p.I885Vfs*30|1|0.06|ENSG00000134324|chr2:11824770-11824771|-/GTGAAGTT|frameshift_variant	REV__LPIN1|p.I885Vfs*30|1|0.06|ENSG00000134324|chr2:11824770-11824771|-/GTGAAGTT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	524.800048828125	2	524.802237	1047.58992	-0.044327	-2.3263E-05	-3.8311	-0.0020106	-3.8754	-0.0020338	524.8003676874375	130.37	0.98898	129.26	129.03	130.02	-1.1121					41	19	3	0	0	0	0.63104	1	10344	10344		57.453	7.4281	1	97930	+		38210	28625	31524	31548	41559	41559		629			0.06802983704778853
MKRRAKIRKYV	11	Unmodified	_MKRRAKIRKYV_					0	0	0			REV__nc|ENSG00000113657|Q14195|DPYSL3	REV__nc|ENSG00000113657|Q14195|DPYSL3	MULTI-MSMS	OvCa9_classI_Rep4_	4	483.6347961425781	3	483.638007	1447.89219	-6.2422	-0.003019	-0.88389	-0.00042748	-7.1261	-0.0034465	483.63750108223127	159.48	3.4267	157.89	156.66	160.09	-1.5894					215	86	4	0	0	0	0.72507	1	15716	15716		14.694	5.0475	1	104790	+		38211	18166	31525	31549	41560	41560					0.18616124443974513
MKRRAKIRKYV	11	Unmodified	_MKRRAKIRKYV_					0	0	0			REV__nc|ENSG00000113657|Q14195|DPYSL3	REV__nc|ENSG00000113657|Q14195|DPYSL3	MULTI-MATCH	OvCa9_classI_Rep3	3		3	483.638007	1447.89219	-6.7703	-0.0032744	-0.50499	-0.00024423	-7.2753	-0.0035186	483.6376854215649	159.16	1.9895	157.9	156.84	158.83	-1.267	0.0010137	0.00047257	NaN	14.694	62	43	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27097	+		38212	18166	31525	31549							0.18616124443974513
MKRRTLLLS	9	Unmodified	_MKRRTLLLS_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.791259765625	2	559.347343	1116.68013	1.6736	0.00093614	-1.0992	-0.00061484	0.57443	0.00032131	559.346505493398	109.48	0.53175	109.48	109.19	109.73	0					14	11	2	0	0	0	0.027462	1	12424	12424		37.159	0	1	103530			38213	9359	31526	31550	41561	41561					0.12646033033229287
MKRSSGDS	8	Unmodified	_MKRSSGDS_					0	0	0		tr|A0A553SSB2|A0A553SSB2_NIACIDUF4317familyproteinOS=NialliacirculansOX=1397GN=CEQ21_02585PE=4SV=1	tr|A0A553SSB2|A0A553SSB2_NIACIDUF4317familyproteinOS=NialliacirculansOX=1397GN=CEQ21_02585PE=4SV=1	tr|A0A553SSB2|A0A553SSB2_NIACIDUF4317familyproteinOS=NialliacirculansOX=1397GN=CEQ21_02585PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	434.20330810546875	2	434.203084	866.391615	1.2394	0.00053816	-0.82374	-0.00035767	0.41569	0.00018049	434.2025952345841	127.91	1.6798	127.68	127.34	129.02	-0.22697					69	33	3	0	0	0	0.74679	1	12551	12551		28.254	1.4582	1	238510			38214	34353	31527	31551	41562	41562					-0.04692481944869087
MKRYVTIS	8	Unmodified	_MKRYVTIS_					0	0	0		nc|ENSG00000070540|Q5MNZ9-2|WIPI1;ENSG00000070540|ENST00000262139|WIPI1;ENST00000589459.5_1_17:66423364-66453609:-|nuORF	nc|ENSG00000070540|Q5MNZ9-2|WIPI1	nc|ENSG00000070540|Q5MNZ9-2|WIPI1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.25640869140625	2	499.278595	996.542637	-1.0304	-0.00051447	3.1574	0.0015764	2.127	0.001062	499.28203218248603	70.223	0.87759	66.742	66.105	66.983	-3.4812					26	17	3	0	0	0	0.028476	1	5301	5301		53.351	0	1	45619			38215	1429	31528	31552	41563	41563					0.044227044337844745
MKSLKLVIQST	11	Unmodified	_MKSLKLVIQST_					0	0	0		ENST00000427635.6_1_10:69682690-69747802:-|nuORF;nc|ENSG00000148634|Q5GLZ8-6|HERC4;nc|ENSG00000148634|Q5GLZ8-3|HERC4;ENSG00000148634|ENST00000373700|HERC4;nc|ENSG00000148634|Q5GLZ8|HERC4	ENST00000427635.6_1_10:69682690-69747802:-|nuORF	ENST00000427635.6_1_10:69682690-69747802:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	624.3711547851562	2	624.373223	1246.73189	-6.0356	-0.0037685	2.9011	0.0018114	-3.1345	-0.0019571	624.3746638745315	163.11	0.41466	161.72	161.48	161.9	-1.3925					16	8	3	0	0	0	0.72497	1	14236	14236		17.468	13.152	1	18807			38216	5419	31529	31553	41564	41564					0.11839731936424869
MKTEAGEKN	9	Unmodified	_MKTEAGEKN_					0	0	0		ENST00000398637.9_1_12:46577281-46577383:-|nuORF	ENST00000398637.9_1_12:46577281-46577383:-|nuORF	ENST00000398637.9_1_12:46577281-46577383:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.8017578125	2	504.244949	1006.47534	0.054281	2.7371E-05	-0.83885	-0.00042298	-0.78456	-0.00039561	504.2445152775578	57.058	0.94376	57.058	56.788	57.732	0					29	21	2	0	0	0	0.027403	1	4760	4760		69.628	21.712	1	192660			38217	11372	31530	31554	41565	41565					-0.02763370567822676
MKVEFSEIG	9	Unmodified	_MKVEFSEIG_					0	0	0			REV__tr|A0A553SKH4|A0A553SKH4_NIACIAI-2EfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_18680PE=3SV=1	REV__tr|A0A553SKH4|A0A553SKH4_NIACIAI-2EfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_18680PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.3099975585938	2	520.260068	1038.50558	-0.057899	-3.0123E-05	3.3168	0.0017256	3.2589	0.0016955	520.2626673740301	83.447	0.69917	81.848	81.731	82.43	-1.5988					17	13	2	0	0	0	0.027462	1	7143	7143		31.955	3.7006	1	62533	+		38218	30126	31531	31555	41566	41566					-0.012130119026551256
MKVESVTVGGV	11	Unmodified	_MKVESVTVGGV_					0	0	0			REV__USP46-SCFD2|1|fusion	REV__USP46-SCFD2|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.297607421875	2	553.299724	1104.5849	-0.30854	-0.00017072	-1.6192	-0.00089589	-1.9277	-0.0010666	553.297994158776	121.22	1.2876	119.87	119.59	120.88	-1.3479					45	24	2	0	0	0	0.52474	1	11422	11422		51.528	12.774	1	92303	+		38219	22408	31532	31556	41567	41567					0.036786350515058075
MKVIQSCFL	9	Unmodified	_MKVIQSCFL_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;nc|ENSG00000241973|P42356-2|PI4KA;nc|ENSG00000183506|A4QPH2|PI4KAP2;ENST00000360806.9_2_22:21827645-21842641:-|nuORF;ENST00000477296.5_1_22:21827645-21830331:-|nuORF;ENST00000486209.5_1_22:21827645-21829738:-|nuORF;ENST00000492581.5_1_22:21062337-21064665:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	OvCa99_classI_Rep5	1	534.7853393554688	2	534.782656	1067.55076	0.058635	3.1357E-05	-1.0196	-0.00054529	-0.96101	-0.00051393	534.7821368339627	62.21	1.2712	62.21	61.869	63.14	0					71	30	5	0	0	0	0.38969	1	5507	5507		52.937	5.2794	1	29220000			38220	9359	31533	31557	41568	41568					0.0196851535888527
MKVKLERQA	9	Unmodified	_MKVKLERQA_					0	0	0		ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.8156127929688	2	551.823701	1101.63285	-1.5938	-0.0008795	2.3825	0.0013147	0.78866	0.0004352	551.8250255990854	104.46	0.30209	104.46	104.24	104.54	0					17	6	4	0	0	0	0.027304	1	11693	11693		98.629	8.0285	1	700930			38221	935	31534	31558	41569	41569					0.08609753762220862
MKVKNEKLNM	10	Unmodified	_MKVKNEKLNM_					0	0	0		ENST00000518542.1_1_8:19315287-19352580:-|nuORF;nc|ENSG00000147408|Q8TDX6-3|CSGALNACT1;ENSG00000147408|ENST00000692225|CSGALNACT1	ENST00000518542.1_1_8:19315287-19352580:-|nuORF	ENST00000518542.1_1_8:19315287-19352580:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	617.8362426757812	2	617.835951	1233.65735	2.6885	0.001661	3.0348	0.001875	5.7233	0.003536	617.8373471000705	102.65	0.42589	102.65	102.47	102.89	0					20	9	3	0	0	0	0.45788	1	11450	11450		40.058	4.4399	1	805370			38222	5354	31535	31559	41570	41570					0.04986645853432492
MKVKNEKLNM	10	Unmodified	_MKVKNEKLNM_					0	0	0		ENST00000518542.1_1_8:19315287-19352580:-|nuORF;nc|ENSG00000147408|Q8TDX6-3|CSGALNACT1;ENSG00000147408|ENST00000692225|CSGALNACT1	ENST00000518542.1_1_8:19315287-19352580:-|nuORF	ENST00000518542.1_1_8:19315287-19352580:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	617.835951	1233.65735	-1.4419	-0.00089086	3.9812	0.0024597	2.5393	0.0015689	617.8384779050966	103.3	0.83872	102.62	102.28	103.12	-0.68459	-0.042997	0.0014801	NaN	40.058	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25558			38223	5354	31535	31559							0.04986645853432492
MKVKNEKLNM	10	Unmodified	_MKVKNEKLNM_					0	0	0		ENST00000518542.1_1_8:19315287-19352580:-|nuORF;nc|ENSG00000147408|Q8TDX6-3|CSGALNACT1;ENSG00000147408|ENST00000692225|CSGALNACT1	ENST00000518542.1_1_8:19315287-19352580:-|nuORF	ENST00000518542.1_1_8:19315287-19352580:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	617.835951	1233.65735	1.4505	0.00089619	0.97305	0.00060118	2.4236	0.0014974	617.8365805187345	104.16	0.78292	102.73	102.29	103.07	-1.4347	0.068579	-0.002237	NaN	40.058	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36334			38224	5354	31535	31559							0.04986645853432492
MKVKNEKLNM	10	Unmodified	_MKVKNEKLNM_					0	0	0		ENST00000518542.1_1_8:19315287-19352580:-|nuORF;nc|ENSG00000147408|Q8TDX6-3|CSGALNACT1;ENSG00000147408|ENST00000692225|CSGALNACT1	ENST00000518542.1_1_8:19315287-19352580:-|nuORF	ENST00000518542.1_1_8:19315287-19352580:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	617.835951	1233.65735	-0.25642	-0.00015842	2.6259	0.0016224	2.3695	0.001464	617.8377526839688	104.77	1.0709	102.65	102.32	103.39	-2.1192	-0.011566	-0.00019458	NaN	40.058	34	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37143			38225	5354	31535	31559							0.04986645853432492
MKVKSPGDIT	10	Unmodified	_MKVKSPGDIT_					0	0	0			REV__nc|ENSG00000196924|P21333-2|FLNA	REV__nc|ENSG00000196924|P21333-2|FLNA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.8327026367188	2	538.294442	1074.57433	-1.1459	-0.00061682	-1.105	-0.00059482	-2.2509	-0.0012116	538.293219077773	94.679	1.2962	92.211	91.666	92.962	-2.4685					93	25	6	0	0	0	0.027363	1	8268	8268		75.043	0	1	407350	+		38226	22875	31536	31560	41571	41571					0.040026523970709604
MKVKVRTLV	9	Unmodified	_MKVKVRTLV_					0	0	0		ENST00000502280.5_1_4:78085583-78086976:+|nuORF	ENST00000502280.5_1_4:78085583-78086976:+|nuORF	ENST00000502280.5_1_4:78085583-78086976:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.783447265625	2	537.346812	1072.67907	-1.5395	-0.00082724	-1.2353	-0.00066376	-2.7747	-0.001491	537.3460824031202	53.062	0.60432	49.854	49.698	50.303	-3.208					17	11	2	0	0	0	0.027462	1	3197	3197		29.15	9.1528	1	25247			38227	12847	31537	31561	41572	41572					0.14563818664305472
MKVKVRTLV	9	Unmodified	_MKVKVRTLV_					0	0	0		ENST00000502280.5_1_4:78085583-78086976:+|nuORF	ENST00000502280.5_1_4:78085583-78086976:+|nuORF	ENST00000502280.5_1_4:78085583-78086976:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	537.346812	1072.67907	-1.9833	-0.0010657	-1.2308	-0.00066136	-3.2141	-0.0017271	537.3459599167084	52.498	0.73901	49.685	49.444	50.183	-2.8129	-0.084145	7.1104E-07	NaN	29.15	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24822			38228	12847	31537	31561							0.14563818664305472
MKVLQHNLVL	10	Unmodified	_MKVLQHNLVL_					0	0	0			REV__ENST00000504430.5_1_5:36985950-36986067:+|nuORF	REV__ENST00000504430.5_1_5:36985950-36986067:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.85546875	2	597.855001	1193.69545	-1.5377	-0.00091935	3.8871	0.0023239	2.3493	0.0014045	597.8570606153338	148.28	4.8676	146.85	145.38	150.25	-1.435					291	102	5	0	0	0	0.59703	1	14678	14678		42.396	7.2441	1	767860	+		38229	26858	31538	31562	41573	41573					0.10634899830392897
MKVPDMKLP	9	Unmodified	_MKVPDMKLP_					0	0	0		nc|ENSG00000105227|Q9BXM0-3|PRX;ENST00000291825.11_2_19:40899875-40904000:-|nuORF;ENSG00000105227|ENST00000324001|PRX	nc|ENSG00000105227|Q9BXM0-3|PRX	nc|ENSG00000105227|Q9BXM0-3|PRX	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.7899780273438	2	529.790481	1057.56641	-1.1614	-0.00061529	-0.70072	-0.00037123	-1.8621	-0.00098652	529.7899356000038	77.232	1.6456	74.416	74.096	75.742	-2.8165					56	33	2	0	0	0	0.3249	1	6173	6173		60.118	1.872	1	334100			38230	2430	31539	31563	41574	41574					0.03992801875938312
MKVPDMKLP	9	Unmodified	_MKVPDMKLP_					0	0	0		nc|ENSG00000105227|Q9BXM0-3|PRX;ENST00000291825.11_2_19:40899875-40904000:-|nuORF;ENSG00000105227|ENST00000324001|PRX	nc|ENSG00000105227|Q9BXM0-3|PRX	nc|ENSG00000105227|Q9BXM0-3|PRX	MULTI-MATCH	OvCa99_classI_Rep5	1		2	529.790481	1057.56641	0.4723	0.00025022	-1.0137	-0.00053707	-0.54144	-0.00028685	529.7898623928954	74.209	0.57901	74.209	74.056	74.635	0	-0.045155	-0.00022518	NaN	60.118	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1494400			38231	2430	31539	31563							0.03992801875938312
MKVPDMKLP	9	Unmodified	_MKVPDMKLP_					0	0	0		nc|ENSG00000105227|Q9BXM0-3|PRX;ENST00000291825.11_2_19:40899875-40904000:-|nuORF;ENSG00000105227|ENST00000324001|PRX	nc|ENSG00000105227|Q9BXM0-3|PRX	nc|ENSG00000105227|Q9BXM0-3|PRX	MULTI-MATCH	OvCa9_classI_Rep2	2		2	529.790481	1057.56641	-1.2613	-0.00066825	0.26102	0.00013828	-1.0003	-0.00052997	529.7903953517321	76.294	1.0938	74.44	73.788	74.881	-1.854	0.1851	0.0011255	NaN	60.118	34	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85607			38232	2430	31539	31563							0.03992801875938312
MKVPDMKLP	9	Unmodified	_MKVPDMKLP_					0	0	0		nc|ENSG00000105227|Q9BXM0-3|PRX;ENST00000291825.11_2_19:40899875-40904000:-|nuORF;ENSG00000105227|ENST00000324001|PRX	nc|ENSG00000105227|Q9BXM0-3|PRX	nc|ENSG00000105227|Q9BXM0-3|PRX	MULTI-MATCH	OvCa9_classI_Rep3	3		2	529.790481	1057.56641	-0.85072	-0.0004507	-1.6302	-0.00086364	-2.4809	-0.0013143	529.7894881047292	76.325	0.78311	73.954	73.67	74.453	-2.3715	-0.30089	-0.00087832	NaN	60.118	17	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21985			38233	2430	31539	31563							0.03992801875938312
MKVSEVEKVT	10	Unmodified	_MKVSEVEKVT_					0	0	0		tr|A0A553SNX3|A0A553SNX3_NIACIChemotaxisproteinCheAOS=NialliacirculansOX=1397GN=CEQ21_25390PE=4SV=1	tr|A0A553SNX3|A0A553SNX3_NIACIChemotaxisproteinCheAOS=NialliacirculansOX=1397GN=CEQ21_25390PE=4SV=1	tr|A0A553SNX3|A0A553SNX3_NIACIChemotaxisproteinCheAOS=NialliacirculansOX=1397GN=CEQ21_25390PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	575.3110961914062	2	575.312832	1148.61111	-0.889	-0.00051145	-2.8681	-0.00165	-3.7571	-0.0021615	575.3111564833367	99.127	2.7262	97.442	97.061	99.787	-1.685					178	53	6	0	0	0	0.22663	1	6716	6716		90.37	0	1	7573400			38234	33974	31540	31564	41575	41575					0.04274904222961595
MKVSKTKPP	9	Unmodified	_MKVSKTKPP_					0	0	0		ENSG00000186471|ENST00000371431|AKAP14	ENSG00000186471|ENST00000371431|AKAP14	ENSG00000186471|ENST00000371431|AKAP14	MULTI-MSMS	OvCa9_classI_Rep2	2	508.302001953125	2	508.30207	1014.58959	0.17446	8.8677E-05	-0.8286	-0.00042118	-0.65415	-0.0003325	508.3016033253037	81.716	3.6233	80.067	78.915	82.538	-1.6485					135	71	4	0	0	0	0.33652	1	6951	6951		58.782	0.97068	1	1275400			38235	8337	31541	31565	41576	41576					0.08287563984924873
MKWKFWNNWFY	11	Unmodified	_MKWKFWNNWFY_					0	0	0		tr|A0A553SUB8|A0A553SUB8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_06610PE=4SV=1	tr|A0A553SUB8|A0A553SUB8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_06610PE=4SV=1	tr|A0A553SUB8|A0A553SUB8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_06610PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.846435546875	3	550.595585	1648.76493	-0.65596	-0.00036117	-1.2817	-0.00070569	-1.9376	-0.0010669	550.9291753756227	29.312	0.29955	29.312	29.137	29.436	0					7	5	2	0	0	0	0.02653	1	1048	1048		6.3209	4.7979	1	72877			38236	34592	31542	31566	41577	41577					-0.033506412208453185
MKYAIVITL	9	Unmodified	_MKYAIVITL_					0	0	0		ENST00000592841.5_1_19:34919394-34922879:+|nuORF	ENST00000592841.5_1_19:34919394-34922879:+|nuORF	ENST00000592841.5_1_19:34919394-34922879:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	526.313232421875	2	526.314646	1050.61474	1.4872	0.00078273	0.92379	0.0004862	2.411	0.0012689	526.3150539679418	125.72	2.3814	125.72	125.11	127.49	0					116	54	3	0	0	0	0.33652	1	14671	14671		58.782	3.2778	1	273860			38237	14141	31543	31567	41578	41578					0.09145618787465537
MKYAIVITL	9	Unmodified	_MKYAIVITL_					0	0	0		ENST00000592841.5_1_19:34919394-34922879:+|nuORF	ENST00000592841.5_1_19:34919394-34922879:+|nuORF	ENST00000592841.5_1_19:34919394-34922879:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.3156127929688	2	526.314646	1050.61474	-2.5993	-0.001368	2.4633	0.0012965	-0.13591	-7.1533E-05	526.3157286296546	125.6	1.7421	124.19	123.62	125.36	-1.4143					100	34	4	0	0	0	0.28934	1	11899	11899		64.207	5.4253	1	243670			38238	14141	31543	31567	41579	41579					0.09145618787465537
MKYFTMSIS	9	Unmodified	_MKYFTMSIS_					0	0	0			REV__tr|A0A7D6VV57|A0A7D6VV57_9CLOTPRDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23015PE=4SV=1	REV__tr|A0A7D6VV57|A0A7D6VV57_9CLOTPRDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23015PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.2955322265625	2	554.264296	1106.51404	0.98507	0.00054599	4.1097	0.0022779	5.0948	0.0028239	554.266223469701	132.51	0.33487	132.51	132.32	132.65	0					8	6	2	0	0	0	0.027447	1	15387	15387		56.721	3.7844	1	20610	+		38239	31708	31544	31568	41580	41580					-0.03495781257674935
MLAAISQVLN	10	Unmodified	_MLAAISQVLN_					0	0	0		ENSG00000188352|ENST00000338382|FOCAD;ENST00000603648.1_1_9:20821016-20863425:+|nuORF;ENST00000603844.1_1_9:20823009-20862792:+|nuORF	ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	MULTI-MSMS	OvCa99_classI_Rep5	1	530.298583984375	2	530.296985	1058.57942	2.7738	0.0014709	1.1394	0.00060424	3.9132	0.0020752	530.296202249073	102.44	1.0597	102.44	102.04	103.1	0					83	24	5	0	0	0	0.55109	1	11411	11411		47.96	3.4285	1	1872000			38240	8469	31545	31569	41581	41581					0.05246956259702529
MLADSVAPTI	10	Unmodified	_MLADSVAPTI_					0	0	0		tr|A0A553SJ82|A0A553SJ82_NIACITandem-95repeatproteinOS=NialliacirculansOX=1397GN=CEQ21_16265PE=4SV=1	tr|A0A553SJ82|A0A553SJ82_NIACITandem-95repeatproteinOS=NialliacirculansOX=1397GN=CEQ21_16265PE=4SV=1	tr|A0A553SJ82|A0A553SJ82_NIACITandem-95repeatproteinOS=NialliacirculansOX=1397GN=CEQ21_16265PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	509.26666259765625	2	509.267893	1016.52123	2.4642	0.0012549	-3.6801	-0.0018741	-1.2159	-0.0006192	509.2659860081979	113.44	0.4991	113.44	113.24	113.74	0					19	12	2	0	0	0	0.48198	1	12933	12933		56.721	3.3696	1	310290			38241	33474	31546	31570	41582	41582					0.013632746144139674
MLADSVAPTI	10	Unmodified	_MLADSVAPTI_					0	0	0		tr|A0A553SJ82|A0A553SJ82_NIACITandem-95repeatproteinOS=NialliacirculansOX=1397GN=CEQ21_16265PE=4SV=1	tr|A0A553SJ82|A0A553SJ82_NIACITandem-95repeatproteinOS=NialliacirculansOX=1397GN=CEQ21_16265PE=4SV=1	tr|A0A553SJ82|A0A553SJ82_NIACITandem-95repeatproteinOS=NialliacirculansOX=1397GN=CEQ21_16265PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	509.267893	1016.52123	0.21279	0.00010837	-8.1827	-0.0041672	-7.9699	-0.0040588	509.26360941891323	113.64	0.64244	113.52	113.32	113.96	-0.11777	0.10988	-0.0026478	NaN	56.721	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17055			38242	33474	31546	31570							0.013632746144139674
MLADSVAPTI	10	Unmodified	_MLADSVAPTI_					0	0	0		tr|A0A553SJ82|A0A553SJ82_NIACITandem-95repeatproteinOS=NialliacirculansOX=1397GN=CEQ21_16265PE=4SV=1	tr|A0A553SJ82|A0A553SJ82_NIACITandem-95repeatproteinOS=NialliacirculansOX=1397GN=CEQ21_16265PE=4SV=1	tr|A0A553SJ82|A0A553SJ82_NIACITandem-95repeatproteinOS=NialliacirculansOX=1397GN=CEQ21_16265PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	509.267893	1016.52123	-0.049526	-2.5222E-05	-7.6703	-0.0039062	-7.7198	-0.0039314	509.26362486235377	114.33	0.45206	113.27	113.05	113.5	-1.055	-0.13881	-0.0021259	NaN	56.721	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20537			38243	33474	31546	31570							0.013632746144139674
MLAEAAARPS	10	Unmodified	_MLAEAAARPS_					0	0	0			REV__ENSG00000185477|ENST00000609438|GPRIN3	REV__ENSG00000185477|ENST00000609438|GPRIN3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.30810546875	2	508.763309	1015.51206	0.48222	0.00024534	-0.74734	-0.00038022	-0.26511	-0.00013488	509.26447136094436	110.77	0.57826	109.17	108.86	109.44	-1.6011					15	10	2	0	0	0	0.026653	1	10216	10216		33.922	0	1	12566	+		38244	22506	31547	31571	41583	41583					0.00492926048730169
MLAEKEMKVK	10	Unmodified	_MLAEKEMKVK_					0	0	0			REV__ENSG00000102189|ENST00000322349|EEA1	REV__ENSG00000102189|ENST00000322349|EEA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	604.2725830078125	2	603.832877	1205.6512	2.1517	0.0012993	-2.7248	-0.0016453	-0.57308	-0.00034604	603.8325974818358	128.66	0.42052	128.66	128.42	128.84	0					11	8	2	0	0	0	0.026734	1	14909	14909		56.721	31.271	1	29984	+		38245	17542	31548	31572	41584	41584					0.05660127621877109
MLALMALISL	10	Unmodified	_MLALMALISL_					0	0	0		ENST00000465804.5_1_3:149237996-149238101:-|nuORF	ENST00000465804.5_1_3:149237996-149238101:-|nuORF	ENST00000465804.5_1_3:149237996-149238101:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	538.3147583007812	2	538.316331	1074.61811	-0.21584	-0.00011619	-0.54301	-0.00029231	-0.75885	-0.0004085	538.315698991444	71.466	1.8309	68.959	68.281	70.112	-2.5072					83	34	4	0	0	0	0.47435	1	5766	5766		57.811	6.4758	1	1027100			38246	12274	31549	31573	41585	41585					0.08378545569848939
MLALRWLA	8	Unmodified	_MLALRWLA_					0	0	0		ENST00000561311.5_1_15:63031667-63032853:+|nuORF	ENST00000561311.5_1_15:63031667-63032853:+|nuORF	ENST00000561311.5_1_15:63031667-63032853:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.7619323730469	2	487.286223	972.557893	0.38888	0.0001895	1.2771	0.00062234	1.666	0.00081183	487.2867255009859	60.485	0.3951	57.055	56.799	57.194	-3.43					12	7	2	0	0	0	0.028476	1	4084	4084		44.531	0	1	52304			38247	13752	31550	31574	41586	41586					0.07051616021612972
MLALRWLA	8	Unmodified	_MLALRWLA_					0	0	0		ENST00000561311.5_1_15:63031667-63032853:+|nuORF	ENST00000561311.5_1_15:63031667-63032853:+|nuORF	ENST00000561311.5_1_15:63031667-63032853:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	487.286223	972.557893	-0.048911	-2.3834E-05	1.3755	0.00067027	1.3266	0.00064644	487.286887788374	57.1	0.52043	57.1	56.788	57.309	0	0.04466	-0.000452	NaN	44.531	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	958880			38248	13752	31550	31574							0.07051616021612972
MLALRWLA	8	Unmodified	_MLALRWLA_					0	0	0		ENST00000561311.5_1_15:63031667-63032853:+|nuORF	ENST00000561311.5_1_15:63031667-63032853:+|nuORF	ENST00000561311.5_1_15:63031667-63032853:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	487.286223	972.557893	-0.23266	-0.00011337	2.3902	0.0011647	2.1576	0.0010513	487.28726058817915	59.781	0.77625	57.011	56.514	57.291	-2.7702	-0.044404	0.0005369	NaN	44.531	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31478			38249	13752	31550	31574							0.07051616021612972
MLALSSWPIS	10	Oxidation (M)	_M(Oxidation (M))LALSSWPIS_		M(1)LALSSWPIS		M(64)LALSSWPIS	0	0	1		ENST00000491557.2_1_10:77163559-77163751:+|nuORF	ENST00000491557.2_1_10:77163559-77163751:+|nuORF	ENST00000491557.2_1_10:77163559-77163751:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	560.7892456054688	2	560.788992	1119.56343	0.076238	4.2753E-05	3.0459	0.0017081	3.1221	0.0017508	560.7906951341574	64.273	2.9179	61.548	60.968	63.886	-2.7245					181	56	6	0	0	0	0.42962	1	4905	4905		64.207	7.4862	1	2758800			38250	12714	31551	31575	41587	41587		341			0.008432500227854689
MLAMIKVND	9	Unmodified	_MLAMIKVND_					0	0	0			REV__tr|A0A7D6VTK3|A0A7D6VTK3_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09345PE=4SV=1	REV__tr|A0A7D6VTK3|A0A7D6VTK3_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09345PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	517.7750244140625	2	517.772288	1033.53002	1.0845	0.00056152	-3.2491	-0.0016823	-2.1646	-0.0011208	517.7705176855802	111.26	2.2615	111.26	110.85	113.11	0					129	49	4	0	0	0	0.071436	1	12676	12676		106.42	1.1464	1	9632800	+		38251	31610	31552	31576	41588	41588					0.014599249792581759
MLARGQPLP	9	Oxidation (M)	_M(Oxidation (M))LARGQPLP_		M(1)LARGQPLP		M(68)LARGQPLP	0	0	1		nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2;nc|ENSG00000127616|P51532-5|SMARCA4;nc|ENSG00000127616|P51532-2|SMARCA4;nc|ENSG00000127616|P51532-3|SMARCA4;nc|ENSG00000127616|P51532-4|SMARCA4;ENSG00000127616|ENST00000344626|SMARCA4;SMARCA4|p.E664Gfs*44|1|0.16|ENSG00000127616|chr19:11003386-11003387|-/GTCAGGAGATCGAGACTGTCTTGGCTAACAC|frameshift_variant;SMARCA4|p.I1250Tfs*41|1|0.04|ENSG00000127616|chr19:11033492-11033492|T/-|frameshift_variant;SMARCA4-CARM1|1|fusion;SMARCA4-C19orf38|1|fusion	nc|ENSG00000080503|P51531-2|SMARCA2;SMARCA4-C19orf38|1|fusion	nc|ENSG00000080503|P51531-2|SMARCA2	MULTI-MSMS	OvCa99_classI_Rep5	1	499.7777404785156	2	499.776219	997.537886	2.0771	0.0010381	3.8687	0.0019335	5.9458	0.0029716	499.77813352905025	122.07	0.60204	122.07	121.75	122.36	0					23	12	3	0	0	0	0.25214	1	14069	14069		68.485	12.98	1	203690			38252	1636;32840	31553	31577	41589	41589		62			0.03901820291025615
MLARPNPLC	9	Unmodified	_MLARPNPLC_					0	0	0			REV__ENST00000569930.1_1_16:2133412-2138608:+|nuORF	REV__ENST00000569930.1_1_16:2133412-2138608:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7646484375	2	507.764797	1013.51504	-1.4467	-0.00073458	-2.0821	-0.0010572	-3.5288	-0.0017918	507.7636343810992	118.57	3.8509	117.22	115.9	119.75	-1.3444					112	73	2	0	0	0	0.61208	1	11195	11195		30.504	0	1	81601	+		38253	27730	31554	31578	41590	41590					0.008824779018823392
MLAVARPLS	9	Unmodified	_MLAVARPLS_					0	0	0		ENSG00000004779|ENST00000007516|NDUFAB1	ENSG00000004779|ENST00000007516|NDUFAB1	ENSG00000004779|ENST00000007516|NDUFAB1	MULTI-MSMS	OvCa9_classI_Rep3	3	479.28009033203125	2	479.281137	956.547722	-0.4527	-0.00021697	-3.0726	-0.0014726	-3.5253	-0.0016896	479.2796688729981	96.325	1.9148	94.496	94.027	95.941	-1.8286					106	37	4	0	0	0	0.31747	1	6322	6322		60.972	0.67798	1	3171600			38254	832	31555	31579	41591	41591					0.0677100829640267
MLCLTKSKQ	9	Unmodified	_MLCLTKSKQ_					0	0	0			REV__ENST00000260665.11_1_2:44139613-44139676:-|nuORF	REV__ENST00000260665.11_1_2:44139613-44139676:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	526.2865600585938	2	526.285563	1050.55657	0.34392	0.000181	2.8552	0.0015026	3.1991	0.0016836	526.2870591251481	112.03	1.3305	111.89	111.57	112.9	-0.13961					47	26	2	0	0	0	0.31747	1	10591	10591		60.972	3.1607	1	146520	+		38255	23931	31556	31580	41592	41592					0.0333161387054588
MLCMLHKIN	9	Unmodified	_MLCMLHKIN_					0	0	0		ENST00000306602.2_1_4:76942325-76942403:-|nuORF	ENST00000306602.2_1_4:76942325-76942403:-|nuORF	ENST00000306602.2_1_4:76942325-76942403:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	551.7862548828125	2	551.782133	1101.54971	0.84506	0.00046629	3.8792	0.0021405	4.7243	0.0026068	551.7842579769714	111.38	1.137	110.28	110.05	111.19	-1.1038					31	22	2	0	0	0	0.38529	1	8102	8102		53.351	2.1588	1	151870			38256	10245	31557	31581	41593	41593					0.0029997771832768194
MLCRMFLL	8	2 Oxidation (M)	_M(Oxidation (M))LCRM(Oxidation (M))FLL_		M(1)LCRM(1)FLL		M(75)LCRM(75)FLL	0	0	2		nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	OvCa99_classI_Rep5	1	529.7593383789062	2	529.763409	1057.51226	0.613	0.00032474	1.5468	0.00081943	2.1598	0.0011442	529.7640291886793	141.41	0.7511	141.41	141.13	141.88	0					29	14	3	0	0	0	0.52992	2	16530	16520;16530		74.517	10.983	1	224050			38257	15046	31558	31582	41594;41595	41595		367;368			-0.014191135472628957
MLCSGPLAII	10	Carbamidomethyl (C),Oxidation (M)	_M(Oxidation (M))LC(Carbamidomethyl (C))SGPLAII_	MLC(1)SGPLAII	M(1)LCSGPLAII	MLC(56)SGPLAII	M(56)LCSGPLAII	0	1	1		nc|ENSG00000100084|P54198-2|HIRA;ENSG00000100084|ENST00000263208|HIRA	nc|ENSG00000100084|P54198-2|HIRA	nc|ENSG00000100084|P54198-2|HIRA	MULTI-MSMS	OvCa99_classI_Rep5	1	545.7962646484375	2	545.785395	1089.55624	2.9496	0.0016098	3.4378	0.0018763	6.3874	0.0034861	545.7871753384218	97.765	1.1546	97.765	97.397	98.552	0					89	26	5	0	0	0	0.49049	1	10733	10733		55.504	6.2934	1	18229000			38258	2005	31559	31583	41596	41596	15	72			0.015041941506979128
MLDDKSLCF	9	Unmodified	_MLDDKSLCF_					0	0	0			REV__nc|ENSG00000144191|Q16281-2|CNGA3	REV__nc|ENSG00000144191|Q16281-2|CNGA3	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.245849609375	2	536.246103	1070.47765	-0.42872	-0.0002299	-0.14478	-7.7637E-05	-0.5735	-0.00030753	536.2460282370151	114.83	3.7432	113.44	113.1	116.84	-1.3977					114	72	2	0	0	0	0.2784	1	10658	10658		65.465	2.1591	1	971930	+		38259	19894	31560	31584	41597	41597					-0.05476658154384495
MLDESVIIQ	9	Unmodified	_MLDESVIIQ_					0	0	0		ENST00000542371.1_1_12:6972998-6973244:+|nuORF;ENST00000537267.5_1_12:6966716-6975238:+|nuORF;nc|ENSG00000111667|P45974-2|USP5;ENSG00000111667|ENST00000229268|USP5	ENST00000542371.1_1_12:6972998-6973244:+|nuORF	ENST00000542371.1_1_12:6972998-6973244:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	524.2710571289062	2	524.273175	1046.5318	-1.2665	-0.00066397	-2.1182	-0.0011105	-3.3847	-0.0017745	524.2719353297791	119.84	3.5537	119.67	119.05	122.61	-0.17138					188	71	5	0	0	0	0.27001	1	11585	11585		66.429	5.4573	1	902400			38260	2841	31561	31585	41598	41598					0.010392572688488144
MLDESVIIQ	9	Unmodified	_MLDESVIIQ_					0	0	0		ENST00000542371.1_1_12:6972998-6973244:+|nuORF;ENST00000537267.5_1_12:6966716-6975238:+|nuORF;nc|ENSG00000111667|P45974-2|USP5;ENSG00000111667|ENST00000229268|USP5	ENST00000542371.1_1_12:6972998-6973244:+|nuORF	ENST00000542371.1_1_12:6972998-6973244:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.2709350585938	2	524.273175	1046.5318	-1.2154	-0.00063721	-2.3353	-0.0012243	-3.5507	-0.0018615	524.271834383769	120.77	3.305	119.42	118.72	122.02	-1.3479					160	64	5	0	0	0	0.37135	1	11446	11446		54.776	5.5655	1	1764900			38261	2841	31561	31585	41599	41599					0.010392572688488144
MLDLKGKAK	9	Unmodified	_MLDLKGKAK_					0	0	0		ENSG00000176244|ENST00000356189|ACBD7	ENSG00000176244|ENST00000356189|ACBD7	ENSG00000176244|ENST00000356189|ACBD7	MSMS	OvCa99_classI_Rep5	1	502.3019714355469	2	502.30207	1002.58959	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.7	1	114.7	114.2	115.2	0								0	0	0	0.1756	1	13097	13097		40.778	3.6191	1				38262	7593	31562	31586	41600	41600					0.08839563984918186
MLDPLEVHL	9	Unmodified	_MLDPLEVHL_					0	0	0		PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant;PRPF8|p.Q2065Hfs*8|1|0.04|ENSG00000174231|chr17:1653809-1653810|-/G|frameshift_variant;ENSG00000174231|ENST00000304992|PRPF8;PITPNA-PRPF8|1|fusion	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant;PITPNA-PRPF8|1|fusion	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	533.7850952148438	2	533.78371	1065.55287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.78	1	126.78	126.28	127.28	0								0	0	0	0.11726	1	14665	14665		68.787	10.557	1				38263	7449;15503	31563	31587	41601	41601					0.02271267368359986
MLDTFSSAPV	10	Unmodified	_MLDTFSSAPV_					0	0	0		nc|ENSG00000189056|P78509-3|RELN;nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN	nc|ENSG00000189056|P78509-3|RELN	nc|ENSG00000189056|P78509-3|RELN	MULTI-MSMS	OvCa9_classI_Rep2	2	534.259033203125	2	534.257525	1066.5005	-0.87643	-0.00046824	3.8611	0.0020628	2.9847	0.0015946	534.2594436353716	107.28	2.2603	106.97	106.37	108.63	-0.30836					108	45	3	0	0	0	0.3976	1	10002	10002		68.787	20.871	1	322070			38264	8529	31564	31588	41602	41602					-0.030093157652800073
MLEITKDEI	9	Unmodified	_MLEITKDEI_					0	0	0			REV__nc|ENSG00000072803|Q9UKB1-2|FBXW11	REV__nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MSMS	OvCa9_classI_Rep2	2	546.2861938476562	2	546.286282	1090.55801	-0.56606	-0.00030923	0.47535	0.00025968	-0.09071	-4.9554E-05	546.2863258210423	137.01	1.2304	136.78	136.4	137.63	-0.22697					54	25	3	0	0	0	0.38969	1	13654	13654		52.937	3.4952	1	145390	+		38265	16924	31565	31589	41603	41603					0.01635526440304602
MLEITKDEI	9	Unmodified	_MLEITKDEI_					0	0	0			REV__nc|ENSG00000072803|Q9UKB1-2|FBXW11	REV__nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MSMS	OvCa9_classI_Rep3	3	546.2862548828125	2	546.286282	1090.55801	-1.7842	-0.00097466	1.4803	0.00080868	-0.30384	-0.00016598	546.2868719902328	137.72	1.1662	136.63	136.24	137.41	-1.0858					55	23	3	0	0	0	0.16264	1	11227	11227		82.75	10.873	1	134560	+		38266	16924	31565	31589	41604	41604					0.01635526440304602
MLEKLVCQP	9	Unmodified	_MLEKLVCQP_					0	0	0		ENSG00000008323|ENST00000684764|PLEKHG6;nc|ENSG00000008323|Q3KR16-2|PLEKHG6	ENSG00000008323|ENST00000684764|PLEKHG6	ENSG00000008323|ENST00000684764|PLEKHG6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.8063354492188	2	530.780113	1059.54567	1.3881	0.00073678	-2.4988	-0.0013263	-1.1107	-0.00058953	530.7786901774248	130.11	0.79211	128.63	128.36	129.16	-1.4779					24	15	2	0	0	0	0.027462	1	12494	12494		45.952	16.802	1	32314			38267	918	31566	31590	41605	41605					0.018282114962630658
MLELFKPLLT	10	Unmodified	_MLELFKPLLT_					0	0	0			REV__tr|A0A553SJ31|A0A553SJ31_NIACIRNaseadapterRapZOS=NialliacirculansOX=1397GN=rapZPE=3SV=1	REV__tr|A0A553SJ31|A0A553SJ31_NIACIRNaseadapterRapZOS=NialliacirculansOX=1397GN=rapZPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	602.8557739257812	2	602.854135	1203.69372	2.2611	0.0013631	0.85443	0.00051509	3.1155	0.0018782	602.8544543064842	71.261	1.6459	68.658	68.074	69.72	-2.6023					101	32	5	0	0	0	0.24109	1	3318	3318		88.177	17.361	1	817540	+		38268	29959	31567	31591	41606	41606					0.10001846021782512
MLELILIY	8	Unmodified	_MLELILIY_					0	0	0			REV__nc|ENSG00000160145|O60229|KALRN;REV__nc|ENSG00000160145|O60229-6|KALRN	REV__nc|ENSG00000160145|O60229|KALRN	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.29608154296875	2	504.295922	1006.57729	-0.73292	-0.00036961	3.9961	0.0020152	3.2632	0.0016456	504.2978909366257	105.14	3.2976	103.13	102.58	105.88	-2.0161					166	64	4	0	0	0	0.59103	1	9581	9581		65.897	7.1155	1	823080	+		38269	20640;28959	31568	31592	41607	41607					0.07426527521886328
MLEPTAVSML	10	Unmodified	_MLEPTAVSML_					0	0	0			REV__tr|A0A553SUN3|A0A553SUN3_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_02215PE=3SV=1	REV__tr|A0A553SUN3|A0A553SUN3_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_02215PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.2747192382812	2	546.277403	1090.54025	-1.7314	-0.0009458	-1.5552	-0.00084956	-3.2865	-0.0017954	546.2765092095829	119.76	1.3636	118.42	118.03	119.4	-1.3444					60	25	3	0	0	0	0.50656	1	11262	11262		53.351	7.3995	1	223170	+		38270	31100	31569	31593	41608	41608					-0.0013951208618436794
MLFAVPRLI	9	Unmodified	_MLFAVPRLI_					0	0	0			REV__ENSG00000156222|ENST00000394573|SLC28A1	REV__ENSG00000156222|ENST00000394573|SLC28A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.3136596679688	2	530.322805	1058.63106	-0.18111	-9.6048E-05	-0.024753	-1.3127E-05	-0.20587	-0.00010918	530.3223534497399	30.294	0.1973	30.294	30.136	30.334	0					5	3	2	0	0	0	0.027462	1	1145	1145		25.45	0	1	16591	+		38271	20468	31570	31594	41609	41609					0.10408744744245269
MLFDITKK	8	Unmodified	_MLFDITKK_					0	0	0			REV__tr|A0A553SF83|A0A553SF83_NIACILacIfamilyDNA-bindingtranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08395PE=4SV=1	REV__tr|A0A553SF83|A0A553SF83_NIACILacIfamilyDNA-bindingtranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08395PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.28155517578125	2	498.283346	994.552139	-0.41723	-0.0002079	-3.087	-0.0015382	-3.5042	-0.0017461	498.2816571764264	132.68	1.1796	131.56	131.24	132.42	-1.1249					65	23	4	0	0	0	0.61436	1	10656	10656		60.972	3.1607	1	310840	+		38272	29545	31571	31595	41610	41610					0.05464472719290825
MLFGHPLLV	9	Unmodified	_MLFGHPLLV_					0	0	0		ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;ENST00000488848.1_1_X:47102801-47104466:+|nuORF	ENST00000469080.5_1_X:47092634-47106681:+|nuORF	ENST00000469080.5_1_X:47092634-47106681:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	513.7942504882812	2	513.793881	1025.57321	0.96871	0.00049772	0.55219	0.00028371	1.5209	0.00078143	513.7941666521936	123.71	1.186	123.71	123.33	124.51	0					47	25	3	0	0	0	0.14417	1	14270	14270		85.909	20.106	1	440900			38273	2230	31572	31596	41611	41611					0.06144482818808683
MLFHWRKVY	9	Unmodified	_MLFHWRKVY_					0	0	0		ENST00000494526.1_1_10:5948484-5951317:+|nuORF	ENST00000494526.1_1_10:5948484-5951317:+|nuORF	ENST00000494526.1_1_10:5948484-5951317:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	640.3112182617188	2	640.342061	1278.66957	2.4787	0.0015872	1.2543	0.00080316	3.733	0.0023904	640.3425681182626	110.7	0.4023	110.7	110.4	110.8	0					12	8	2	0	0	0	0.027456	1	12556	12556		47.916	16.386	1	50646			38274	12755	31573	31597	41612	41612					0.041380503787650014
MLFHWRTRLRR	11	Unmodified	_MLFHWRTRLRR_					0	0	0		ENST00000560110.1_1_15:44968687-44968816:-|nuORF;ENST00000558573.1_1_15:44968687-45003294:-|nuORF	ENST00000560110.1_1_15:44968687-44968816:-|nuORF	ENST00000560110.1_1_15:44968687-44968816:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.2774047851562	3	524.633256	1570.87794	0.7442	0.00039043	-0.32277	-0.00016934	0.42143	0.0002211	524.9672552447158	41.367	0.24635	38.657	38.536	38.783	-2.7097					7	4	2	0	0	0	0.02625	1	2152	2152		24.232	11.799	1	7281.7			38275	13700	31574	31598	41613	41613					0.1153347201568522
MLFISYDV	8	Unmodified	_MLFISYDV_					0	0	0			REV__tr|A0A553SJC6|A0A553SJC6_NIACIMMPLfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_16535PE=3SV=1	REV__tr|A0A553SJC6|A0A553SJC6_NIACIMMPLfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_16535PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	494.8040466308594	2	494.246429	986.478305	1.1811	0.00058375	3.3433	0.0016524	4.5243	0.0022361	494.2477948078082	65.241	0.91144	62.516	62.181	63.092	-2.7245					24	17	2	0	0	0	0.028476	1	4998	4998		26.796	0	1	30590	+		38276	29994	31575	31599	41614	41614					-0.015474954430260368
MLFKKVIN	8	Unmodified	_MLFKKVIN_					0	0	0			REV__ENSG00000080608|ENST00000397885|PUM3	REV__ENSG00000080608|ENST00000397885|PUM3	MULTI-MSMS	OvCa99_classI_Rep5	1	496.8041076660156	2	496.801706	991.588859	-0.042476	-2.1102E-05	3.1041	0.0015421	3.0616	0.001521	496.803247342706	64.907	1.2726	64.907	64.631	65.904	0					63	31	4	0	0	0	0.57878	1	5915	5915		68.485	18.46	1	7765100	+		38277	17057	31576	31600	41615	41615					0.09272769335859721
MLFNVGFQE	9	Unmodified	_MLFNVGFQE_					0	0	0		ENSG00000158470|ENST00000371711|B4GALT5	ENSG00000158470|ENST00000371711|B4GALT5	ENSG00000158470|ENST00000371711|B4GALT5	MULTI-MSMS	OvCa99_classI_Rep5	1	542.7608032226562	2	542.760235	1083.50592	1.9857	0.0010778	-3.2578	-0.0017682	-1.272	-0.0006904	542.7581287481488	85.45	0.70105	85.45	85.211	85.912	0					27	16	2	0	0	0	0.29717	1	8978	8978		63.306	4.5243	1	767840			38278	5953	31577	31601	41616	41616					-0.0324959218278309
MLFQVVKKN	9	Unmodified	_MLFQVVKKN_					0	0	0			REV__ENST00000441447.1_1_1:35734647-35790997:+|nuORF	REV__ENST00000441447.1_1_1:35734647-35790997:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.3391723632812	2	553.823169	1105.63179	2.5023	0.0013858	4.1438	0.002295	6.6461	0.0036808	553.8246804172312	84.561	0.45493	84.561	84.303	84.758	0					14	10	2	0	0	0	0.027462	1	8858	8858		24.203	0	1	401390	+		38279	24383	31578	31602	41617	41617					0.08319539393301056
MLFSPHLH	8	Oxidation (M)	_M(Oxidation (M))LFSPHLH_		M(1)LFSPHLH		M(47)LFSPHLH	0	0	1			REV__ENST00000397501.5_1_8:27316549-27316885:+|nuORF	REV__ENST00000397501.5_1_8:27316549-27316885:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	499.251953125	2	499.249837	996.485122	0.74535	0.00037211	-1.5708	-0.00078422	-0.82544	-0.0004121	499.2485983298839	158.11	1.5358	158.11	157.65	159.19	0					84	31	4	0	0	0	0.68312	1	18605	18605		46.766	9.6073	1	141510	+		38280	25356	31579	31603	41618	41618		572			-0.013261377717867617
MLFWLLLS	8	Unmodified	_MLFWLLLS_					0	0	0		L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|292|3|anti-sense	L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|292|3|anti-sense	L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|292|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	511.2696228027344	2	511.790807	1021.56706	-0.35429	-0.00018132	-1.906	-0.00097547	-2.2603	-0.0011568	511.79207227814567	88.37	0.55325	86.239	85.957	86.51	-2.1309					21	10	3	0	0	0	0.028476	1	5396	5396		28.254	5.2118	1	22574			38281	14656	31580	31604	41619	41619					0.05713964587312148
MLFYQLIFAF	10	Unmodified	_MLFYQLIFAF_					0	0	0			REV__ENSG00000075420|ENST00000415807|FNDC3B	REV__ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	OvCa99_classI_Rep5	1	646.8421630859375	2	646.841028	1291.6675	1.614	0.001044	-1.5061	-0.0009742	0.10796	6.9831E-05	646.8400288661467	130.57	0.81213	130.57	130.34	131.15	0					41	16	3	0	0	0	0.55145	1	15198	15198		47.916	9.162	1	287460	+		38282	16973	31581	31605	41620	41620					0.0333357685028659
MLGESVPAAV	10	Unmodified	_MLGESVPAAV_					0	0	0		ENSG00000130182|ENST00000576985|ZSCAN10	ENSG00000130182|ENST00000576985|ZSCAN10	ENSG00000130182|ENST00000576985|ZSCAN10	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.28668212890625	2	487.254785	972.495018	-0.56103	-0.00027336	1.4498	0.00070642	0.88877	0.00043306	487.254517399824	48.464	0.25017	45.704	45.629	45.879	-2.7603					5	4	2	0	0	0	0.026768	1	3033	3033		50.025	4.0726	1	5614.2			38283	3965	31582	31606	41621	41621					0.007670054429240736
MLGFGRVKP	9	Unmodified	_MLGFGRVKP_					0	0	0		nc|ENSG00000131697|O75161-2|NPHP4;ENST00000466897.1_1_1:5946982-5948606:-|nuORF;ENSG00000131697|ENST00000378156|NPHP4	nc|ENSG00000131697|O75161-2|NPHP4	nc|ENSG00000131697|O75161-2|NPHP4	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.7637634277344	2	502.78913	1003.56371	0.93363	0.00046942	-0.14748	-7.4154E-05	0.78615	0.00039527	502.7877858306404	102.05	0.64388	102.05	101.69	102.34	0					17	14	2	0	0	0	0.027462	1	11318	11318		31.955	0	1	215250			38284	15014	31583	31607	41622	41622					0.06206714533300328
MLGIVGPVIRG	11	Unmodified	_MLGIVGPVIRG_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.31298828125	2	556.336444	1110.65834	1.7096	0.00095114	-2.8291	-0.0015739	-1.1194	-0.00062279	556.3344665037216	109.94	0.54196	109.94	109.68	110.22	0					16	11	2	0	0	0	0.025909	1	12438	12438		19.997	0.6368	1	192030	+		38285	28942;32737	31584	31608	41623	41623					0.10743228284627548
MLGLEAAPFP	10	Unmodified	_MLGLEAAPFP_					0	0	0		ENST00000495870.1_1_3:46448892-46448994:+|nuORF;ENST00000399036.3_1_3:46448868-46449565:+|nuORF	ENST00000495870.1_1_3:46448892-46448994:+|nuORF	ENST00000495870.1_1_3:46448892-46448994:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.8004150390625	2	523.272978	1044.5314	-0.94127	-0.00049254	-2.1858	-0.0011438	-3.127	-0.0016363	523.7720893411383	101.79	0.34729	101.03	100.81	101.16	-0.76401					10	6	2	0	0	0	0.026871	1	9331	9331		37.159	5.2042	1	11883			38286	11378	31585	31609	41624	41624					0.010918823396195876
MLGLFRKH	8	Unmodified	_MLGLFRKH_					0	0	0		RBM10-PTCD3|2|fusion;RBM10-PTCD3|1|fusion;ENST00000487043.5_1_2:86355098-86363686:+|nuORF;nc|ENSG00000132300|Q96EY7-2|PTCD3;ENSG00000132300|ENST00000254630|PTCD3	RBM10-PTCD3|2|fusion	RBM10-PTCD3|2|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.29058837890625	2	501.289297	1000.56404	1.9923	0.0009987	0.234	0.0001173	2.2263	0.001116	501.28921225940996	136.36	2.694	134.82	133.46	136.15	-1.5437					126	54	3	0	0	0	0.75991	1	13291	13291		21.702	1.2205	1	86011			38287	4123	31586	31610	41625	41625					0.06378134253145618
MLGLRSALL	9	Oxidation (M)	_M(Oxidation (M))LGLRSALL_		M(1)LGLRSALL		M(49)LGLRSALL	0	0	1			REV__ENST00000585044.5_1_17:80406944-80407265:-|nuORF	REV__ENST00000585044.5_1_17:80406944-80407265:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.2922668457031	2	495.294245	988.573937	0.55198	0.00027339	-3.7863	-0.0018753	-3.2343	-0.0016019	495.29207447088186	141.57	0.73334	140.1	139.82	140.55	-1.4627					26	13	3	0	0	0	0.42676	1	13836	13836		49.442	8.6634	1	63124	+		38288	27851	31587	31611	41626	41626		620			0.0791927746786314
MLGNRCNSYDN	11	Unmodified	_MLGNRCNSYDN_					0	0	0		nc|ENSG00000134909|A7KAX9|ARHGAP32;nc|ENSG00000134909|A7KAX9-2|ARHGAP32;ENSG00000134909|ENST00000682385|ARHGAP32	nc|ENSG00000134909|A7KAX9|ARHGAP32	nc|ENSG00000134909|A7KAX9|ARHGAP32	MULTI-SECPEP	OvCa99_classI_Rep5	1	643.2996826171875	2	643.766254	1285.51795	2.4696	0.0015898	-3.2947	-0.002121	-0.82511	-0.00053118	643.7645652348215	100.5	0.16669	100.5	100.36	100.53	0					6	3	2	0	0	0	0.026007	1	11128	11128		8.2351	1.2164	1	634050			38289	15029	31588	31612	41627	41627					-0.11338343501893178
MLGQVHEV	8	Unmodified	_MLGQVHEV_					0	0	0		ENSG00000182871|ENST00000651438|COL18A1;nc|ENSG00000182871|P39060-1|COL18A1;nc|ENSG00000182871|P39060|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	ENSG00000182871|ENST00000651438|COL18A1	MULTI-MSMS	OvCa99_classI_Rep5	1	456.7355651855469	2	456.73402	911.453487	0.66382	0.00030319	-1.0242	-0.00046777	-0.36035	-0.00016458	456.7334813564336	63.303	0.46965	63.303	63.1	63.57	0					25	11	3	0	0	0	0.53252	1	5695	5695		74.255	10.949	1	1265100			38290	8031	31589	31613	41628	41628					-0.005781305257414715
MLGRVPATHG	10	Unmodified	_MLGRVPATHG_					0	0	0			REV__WDR17|p.L749Yfs*16|1|0.18|ENSG00000150627|chr4:176150167-176150167|T/-|frameshift_variant	REV__WDR17|p.L749Yfs*16|1|0.18|ENSG00000150627|chr4:176150167-176150167|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.3328247070312	2	519.779293	1037.54403	-1.6532	-0.00085931	-3.5617	-0.0018513	-5.215	-0.0027106	519.7775011014661	72.736	0.77801	69.34	68.813	69.591	-3.3961					22	15	2	0	0	0	0.026635	1	5548	5548		47.657	4.0313	1	65553	+		38291	20196	31590	31614	41629	41629					0.0267633852254221
MLGRVPATHG	10	Unmodified	_MLGRVPATHG_					0	0	0			REV__WDR17|p.L749Yfs*16|1|0.18|ENSG00000150627|chr4:176150167-176150167|T/-|frameshift_variant	REV__WDR17|p.L749Yfs*16|1|0.18|ENSG00000150627|chr4:176150167-176150167|T/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	519.779293	1037.54403	0.72194	0.00037525	-5.2196	-0.002713	-4.4976	-0.0023378	519.7764126560971	71.715	0.52216	69.208	68.963	69.485	-2.5071	-0.041961	-0.0012372	NaN	47.657	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18431	+		38292	20196	31590	31614							0.0267633852254221
MLGSLGGAIWV	11	Unmodified	_MLGSLGGAIWV_					0	0	0			REV__ENSG00000204695|ENST00000641895|OR14J1	REV__ENSG00000204695|ENST00000641895|OR14J1	MULTI-MSMS	OvCa99_classI_Rep5	1	552.29931640625	2	552.299527	1102.5845	-1.0228	-0.00056488	0.090533	5.0001E-05	-0.93224	-0.00051488	552.299670110836	27.156	0.59918	27.156	26.992	27.591	0					19	11	4	0	0	0	0.68263	1	772	772		35.618	5.1146	1	420370	+		38293	23180	31591	31615	41630	41630					0.03731260122299318
MLGWHLET	8	Unmodified	_MLGWHLET_					0	0	0		nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.P1577Qfs*30|1|0.03|ENSG00000053747|chr18:23867879-23867879|C/-|frameshift_variant	nc|ENSG00000053747|Q16787-3|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.7869873046875	2	493.741845	985.469137	-0.17041	-8.4138E-05	2.3649	0.0011676	2.1945	0.0010835	493.742834266518	121.65	0.69317	121.45	121.25	121.94	-0.19718					24	13	2	0	0	0	0.028476	1	11747	11747		54.765	0	1	24695			38294	1200	31592	31616	41631	41631					-0.024178440086870978
MLGYYGTMVI	10	2 Oxidation (M)	_M(Oxidation (M))LGYYGTM(Oxidation (M))VI_		M(1)LGYYGTM(1)VI		M(44)LGYYGTM(44)VI	0	0	2			REV__tr|A0A553SPS4|A0A553SPS4_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_26920PE=3SV=1	REV__tr|A0A553SPS4|A0A553SPS4_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_26920PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	590.2677612304688	2	590.27486	1178.53517	-7.705	-0.0045481	-2.7375	-0.0016159	-10.442	-0.0061639	590.2732006658329	159.89	2.9332	158.56	157.96	160.89	-1.3316					148	58	4	0	0	0	0.58282	1	13865	13865		44.117	6.3053	1	239760	+		38295	30562	31593	31617	41632	41632		673;674			-0.04695815948798554
MLHIFLYF	8	Unmodified	_MLHIFLYF_					0	0	0		Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|228|3|anti-sense	Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|228|3|anti-sense	Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|228|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.2674560546875	2	542.288431	1082.56231	-0.82342	-0.00044653	-0.98975	-0.00053673	-1.8132	-0.00098326	542.287688070838	76.28	2.3984	73.342	72.985	75.383	-2.9389					125	49	4	0	0	0	0.028476	1	6202	6202		43.626	0	1	621200			38296	14359	31594	31618	41633	41633					0.02433080444529878
MLHIKVYPD	9	Unmodified	_MLHIKVYPD_					0	0	0			REV__ENSG00000067715|ENST00000261205|SYT1	REV__ENSG00000067715|ENST00000261205|SYT1	MULTI-MSMS	OvCa9_classI_Rep2	2	558.2993774414062	2	558.299527	1114.5845	0.64738	0.00036143	-0.61251	-0.00034196	0.034869	1.9467E-05	558.29900042177	109.51	1.3356	109.34	109.12	110.45	-0.17237					56	26	3	0	0	0	0.46356	1	10287	10287		45.972	0.95004	1	142080	+		38297	16839	31595	31619	41634	41634					0.031792601223060046
MLHIKVYPD	9	Unmodified	_MLHIKVYPD_					0	0	0			REV__ENSG00000067715|ENST00000261205|SYT1	REV__ENSG00000067715|ENST00000261205|SYT1	MULTI-MSMS	OvCa9_classI_Rep3	3	558.2974243164062	2	558.299527	1114.5845	0.35132	0.00019614	-0.5182	-0.00028931	-0.16689	-9.3173E-05	558.2991087732556	110.72	1.1172	109.58	109.24	110.36	-1.1444					50	21	3	0	0	0	0.35444	2	8018	8010;8018		56.721	3.7844	1	140800	+		38298	16839	31595	31619	41635;41636	41636					0.031792601223060046
MLHIKVYPD	9	Unmodified	_MLHIKVYPD_					0	0	0			REV__ENSG00000067715|ENST00000261205|SYT1	REV__ENSG00000067715|ENST00000261205|SYT1	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	558.299527	1114.5845	0.35132	0.00019614	-0.5182	-0.00028931	-0.16689	-9.3173E-05	558.2991087732556	110.72	1.1172	109.58	109.24	110.36	-1.1444	0.051239	0.00033024	NaN	56.721	50	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140800	+		38299	16839	31595	31619							0.031792601223060046
MLHKPITLH	9	Unmodified	_MLHKPITLH_					0	0	0		nc|ENSG00000069869|P46934-3|NEDD4;nc|ENSG00000069869|P46934-2|NEDD4;nc|ENSG00000069869|P46934|NEDD4;ENSG00000069869|ENST00000435532|NEDD4;ENST00000503468.5_1_15:56126312-56207567:-|nuORF	nc|ENSG00000069869|P46934-3|NEDD4	nc|ENSG00000069869|P46934-3|NEDD4	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.3134155273438	2	545.315512	1088.61647	1.3932	0.00075975	0.13578	7.4041E-05	1.529	0.00083379	545.3154013364347	137.86	1.1823	136.33	135.83	137.01	-1.5284					46	26	2	0	0	0	0.61208	1	13392	13392		30.504	2.6214	1	19606			38300	14888	31596	31620	41637	41637					0.07570672596102668
MLHLKHIKN	9	Unmodified	_MLHLKHIKN_					0	0	0		tr|A0A7D6VME0|A0A7D6VME0_9CLOTMembranedipeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15015PE=4SV=1	tr|A0A7D6VME0|A0A7D6VME0_9CLOTMembranedipeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15015PE=4SV=1	tr|A0A7D6VME0|A0A7D6VME0_9CLOTMembranedipeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15015PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3292846679688	2	567.334236	1132.65392	-3.474	-0.0019709	-4.3679	-0.002478	-7.8419	-0.004449	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.65476	1	12282	12282		25.45	1.2474	1	458690			38301	34654	31597	31621	41638	41638					0.09289763861715983
MLHVKDAVAF	10	Unmodified	_MLHVKDAVAF_					0	0	0			REV__ENST00000572021.5_1_17:54969063-54989474:-|nuORF	REV__ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	565.8082275390625	2	565.804977	1129.5954	2.401	0.0013585	2.5962	0.0014689	4.9972	0.0028274	565.8062740813734	77.04	1.5355	77.04	76.678	78.214	0					71	36	3	0	0	0	0.24425	1	7729	7729		87.696	28.914	1	6859800	+		38302	18527	31598	31622	41639	41639					0.03578662496556717
MLIDCLITF	9	Unmodified	_MLIDCLITF_					0	0	0			REV__nc|ENSG00000101972|Q8N3U4|STAG2	REV__nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MSMS	OvCa99_classI_Rep5	1	534.7783813476562	2	534.777039	1067.53953	0.4887	0.00026135	2.3161	0.0012386	2.8048	0.0014999	534.7777153953733	81.268	0.57416	81.268	81.08	81.654	0					19	13	2	0	0	0	0.48324	1	8377	8377		44.117	6.9577	1	1400900	+		38303	17530	31599	31623	41640	41640					0.0084569326475048
MLIDTLRANG	10	Unmodified	_MLIDTLRANG_					0	0	0		tr|A0A7D6VUL5|A0A7D6VUL5_9CLOT2Fe-2Siron-sulfurclusterbindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02065PE=4SV=1	tr|A0A7D6VUL5|A0A7D6VUL5_9CLOT2Fe-2Siron-sulfurclusterbindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02065PE=4SV=1	tr|A0A7D6VUL5|A0A7D6VUL5_9CLOT2Fe-2Siron-sulfurclusterbindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02065PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.3264770507812	2	552.297516	1102.58048	2.3948	0.0013226	3.1363	0.0017322	5.5311	0.0030548	552.2988865947204	121.21	1.0711	121.21	121.01	122.08	0					53	23	3	0	0	0	0.026936	1	14012	14012		74.255	0	1	656530			38304	35193	31600	31624	41641	41641					0.03329170628603606
MLIEEQSHI	9	Unmodified	_MLIEEQSHI_					0	0	0		tr|A0A7D7AEQ1|A0A7D7AEQ1_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03290PE=4SV=1	tr|A0A7D7AEQ1|A0A7D7AEQ1_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03290PE=4SV=1	tr|A0A7D7AEQ1|A0A7D7AEQ1_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03290PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.830322265625	2	550.276249	1098.53795	-0.35858	-0.00019732	0.96837	0.00053287	0.60979	0.00033555	550.276595795913	83.151	1.0225	80.468	80.173	81.195	-2.6829					30	20	3	0	0	0	0.027185	1	6878	6878		82.241	2.7895	1	108590			38305	36248	31601	31625	41642	41642					-0.007382244996506415
MLIFHTLF	8	Unmodified	_MLIFHTLF_					0	0	0			REV__ENSG00000165355|ENST00000298097|FBXO33	REV__ENSG00000165355|ENST00000298097|FBXO33	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.8141784667969	2	511.280606	1020.54666	-1.2319	-0.00062984	-3.6587	-0.0018706	-4.8906	-0.0025005	511.2789291102004	95.88	0.85514	93.454	92.804	93.659	-2.4256					24	16	2	0	0	0	0.028476	1	8406	8406		33.516	0	1	30676	+		38306	21082	31602	31626	41643	41643					0.0372079392749356
MLIFIYRY	8	Unmodified	_MLIFIYRY_					0	0	0			REV__tr|A0A7D7AC06|A0A7D7AC06_9CLOTCobaltECFtransporterTcomponentCbiQOS=ClostridiumintestinaleOX=36845GN=cbiQPE=4SV=1	REV__tr|A0A7D7AC06|A0A7D7AC06_9CLOTCobaltECFtransporterTcomponentCbiQOS=ClostridiumintestinaleOX=36845GN=cbiQPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	560.2756958007812	2	559.806988	1117.59942	0.10551	5.9066E-05	1.3596	0.00076109	1.4651	0.00082015	559.8076385319475	106.72	0.74834	105.45	105.06	105.81	-1.267					28	14	4	0	0	0	0.028476	1	7582	7582		8.8223	0	1	50230	+		38307	32681	31603	31627	41644	41644					0.045327519903139546
MLIGHVEEF	9	Unmodified	_MLIGHVEEF_					0	0	0			REV__ENSG00000109193|ENST00000226444|SULT1E1	REV__ENSG00000109193|ENST00000226444|SULT1E1	MULTI-MSMS	OvCa99_classI_Rep5	1	537.7640991210938	2	537.76806	1073.52157	-0.069458	-3.7352E-05	-2.8342	-0.0015241	-2.9036	-0.0015615	537.766614487446	71.063	0.99589	71.063	70.839	71.835	0					49	24	3	0	0	0	0.50066	1	6853	6853		42.474	3.2216	1	1980200	+		38308	17925	31604	31628	41645	41645					-0.012253056657300476
MLIGHVEEF	9	Unmodified	_MLIGHVEEF_					0	0	0			REV__ENSG00000109193|ENST00000226444|SULT1E1	REV__ENSG00000109193|ENST00000226444|SULT1E1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	537.76806	1073.52157	-1.2771	-0.00068676	-2.9178	-0.0015691	-4.1949	-0.0022559	537.7665468614683	74.207	0.61409	70.976	70.723	71.337	-3.2308	-0.043107	-3.3546E-05	NaN	42.474	23	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105380	+		38309	17925	31604	31628							-0.012253056657300476
MLIILLEPA	9	Unmodified	_MLIILLEPA_					0	0	0		ENST00000599328.1_1_19:53744649-53744913:-|nuORF	ENST00000599328.1_1_19:53744649-53744913:-|nuORF	ENST00000599328.1_1_19:53744649-53744913:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.8121032714844	2	506.809196	1011.60384	-0.91945	-0.00046599	2.6038	0.0013196	1.6843	0.00085363	506.81048510289196	101.22	3.3613	98.954	98.29	101.65	-2.2665					172	65	4	0	0	0	0.58665	1	9234	9234		33.516	1.5607	1	2669900			38310	14208	31605	31629	41646	41646					0.09850216413201451
MLILFIIATI	10	Oxidation (M)	_M(Oxidation (M))LILFIIATI_		M(1)LILFIIATI		M(63)LILFIIATI	0	0	1		tr|A0A553SRN2|A0A553SRN2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01345PE=4SV=1	tr|A0A553SRN2|A0A553SRN2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01345PE=4SV=1	tr|A0A553SRN2|A0A553SRN2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01345PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	582.3612060546875	2	582.359053	1162.70355	-1.051	-0.00061207	4.1489	0.0024162	3.0979	0.0018041	582.3613804294387	116.28	1.9799	116.16	115.59	117.57	-0.11777					109	39	5	0	0	0	0.43592	1	11104	11104		63.306	8.2224	1	638600			38311	34279	31606	31630	41647	41647		757			0.12871034027148198
MLIMCNILT	9	Unmodified	_MLIMCNILT_					0	0	0		SCN1A|p.T137N|1|0.04|ENSG00000144285|chr2:166056474-166056474|G/T|missense_variant	SCN1A|p.T137N|1|0.04|ENSG00000144285|chr2:166056474-166056474|G/T|missense_variant	SCN1A|p.T137N|1|0.04|ENSG00000144285|chr2:166056474-166056474|G/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.7825317382812	2	526.271067	1050.52758	-0.23333	-0.00012279	1.1595	0.00061022	0.92619	0.00048743	526.2720518489865	62.231	0.38339	62.231	61.994	62.378	0					14	8	2	0	0	0	0.027426	1	5513	5513		44.117	0	1	276780			38312	32801	31607	31631	41648	41648					0.004337532499221197
MLINFQLDN	9	Oxidation (M)	_M(Oxidation (M))LINFQLDN_		M(1)LINFQLDN		M(82)LINFQLDN	0	0	1			REV__nc|ENSG00000163539|O75122|CLASP2	REV__nc|ENSG00000163539|O75122|CLASP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.27978515625	2	562.276249	1122.53795	0.78669	0.00044234	1.9627	0.0011036	2.7494	0.0015459	562.2784380084108	101.41	1.4087	99.142	98.883	100.29	-2.2665					101	27	6	0	0	0	0.16524	1	9132	9132		82.305	7.2617	1	447070	+		38313	28967	31608	31632	41649	41649		640			-0.018422244996600057
MLINNKSSIA	10	Unmodified	_MLINNKSSIA_					0	0	0			REV__tr|A0A7D6VQ86|A0A7D6VQ86_9CLOTAarF/ABC1/UbiBkinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22150PE=3SV=1	REV__tr|A0A7D6VQ86|A0A7D6VQ86_9CLOTAarF/ABC1/UbiBkinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22150PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	545.797607421875	2	545.799891	1089.58523	0.10875	5.9355E-05	-3.3694	-0.001839	-3.2607	-0.0017797	545.7979475948976	133.37	1.3778	133.14	132.82	134.2	-0.22696					81	27	4	0	0	0	0.20836	2	13224	13224;13241		93.143	12.653	1	613460	+		38314	31305	31609	31633	41650;41651	41650					0.044020547713671476
MLINNKSSIA	10	Unmodified	_MLINNKSSIA_					0	0	0			REV__tr|A0A7D6VQ86|A0A7D6VQ86_9CLOTAarF/ABC1/UbiBkinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22150PE=3SV=1	REV__tr|A0A7D6VQ86|A0A7D6VQ86_9CLOTAarF/ABC1/UbiBkinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22150PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	545.7984619140625	2	545.799891	1089.58523	-0.84793	-0.0004628	-2.3947	-0.001307	-3.2426	-0.0017698	545.7984441888154	134.15	1.3829	133.03	132.76	134.15	-1.1226					73	27	4	0	0	0	0.12609	1	10822	10822		107.01	13.812	1	422680	+		38315	31305	31609	31633	41652	41652					0.044020547713671476
MLIPYIEHW	9	Unmodified	_MLIPYIEHW_					0	0	0		ENSG00000088682|ENST00000262507|COQ9	ENSG00000088682|ENST00000262507|COQ9	ENSG00000088682|ENST00000262507|COQ9	MULTI-MSMS	OvCa9_classI_Rep2	2	601.3094482421875	2	601.307352	1200.60015	-1.6404	-0.00098638	3.5302	0.0021228	1.8898	0.0011364	601.3093900477178	120.38	1.1842	120.21	119.89	121.08	-0.17138					49	23	4	0	0	0	0.53957	1	11611	11611		38.806	5.9937	1	181640			38316	1792	31610	31634	41653	41653					0.007875466393443276
MLIQFPMQP	9	Unmodified	_MLIQFPMQP_					0	0	0		HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|36|2|sense	HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|36|2|sense	HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|36|2|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	552.7841796875	2	552.782656	1103.55076	1.6773	0.00092718	-1.0135	-0.00056023	0.66382	0.00036695	552.781984441079	117	1.0196	117	116.77	117.79	0					63	21	4	0	0	0	0.12365	1	13433	13433		90.777	10.322	1	3077200			38317	14495	31611	31635	41654	41654					0.0031251535890532978
MLIQNIKNL	9	Unmodified	_MLIQNIKNL_					0	0	0			REV__ENSG00000143624|ENST00000318967|INTS3	REV__ENSG00000143624|ENST00000318967|INTS3	MULTI-MSMS	OvCa99_classI_Rep5	1	543.8236083984375	2	543.820627	1085.6267	2.493	0.0013558	-0.45667	-0.00024835	2.0364	0.0011074	543.8199300423503	75.489	1.9585	75.489	75.168	77.126	0					116	48	4	0	0	0	0.46377	1	7505	7505		45.952	7.1458	1	14707000	+		38318	19858	31612	31636	41655	41655					0.08731235530694903
MLIRNLVAH	9	Unmodified	_MLIRNLVAH_					0	0	0		nc|ENSG00000105676|Q6NXE6-2|ARMC6;ENSG00000105676|ENST00000535612|ARMC6;ARMC6|p.G445S|1|0.14|ENSG00000105676|chr19:19057455-19057455|G/A|missense_variant;ENST00000535795.1_1_19:19166753-19168434:+|nuORF	nc|ENSG00000105676|Q6NXE6-2|ARMC6	nc|ENSG00000105676|Q6NXE6-2|ARMC6	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.8099365234375	2	533.813136	1065.61172	-0.37036	-0.0001977	-4.3194	-0.0023058	-4.6898	-0.0025035	533.8107068230561	114.36	1.887	112.96	112.63	114.51	-1.3977					88	36	3	0	0	0	0.42057	1	10674	10674		50.025	0.58299	1	280680			38319	2488	31613	31637	41656	41656					0.08153788453341804
MLISTPLPY	9	Unmodified	_MLISTPLPY_					0	0	0			REV__ENST00000504968.6_1_4:110447426-110447498:+|nuORF	REV__ENST00000504968.6_1_4:110447426-110447498:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.2620849609375	2	517.783179	1033.5518	2.5274	0.0013087	0.43857	0.00022709	2.966	0.0015358	517.783140794607	130.59	0.43863	129.11	128.91	129.35	-1.478					14	8	2	0	0	0	0.027462	1	12510	12510		47.916	0	1	17449	+		38320	26868	31614	31638	41657	41657					0.036370529994655953
MLKGIRVDVPL	11	Unmodified	_MLKGIRVDVPL_					0	0	0			REV__ENSG00000163214|ENST00000457308|DHX57	REV__ENSG00000163214|ENST00000457308|DHX57	MULTI-SECPEP	OvCa9_classI_Rep4_	4	620.8342895507812	2	620.875933	1239.73731	-1.264	-0.00078478	2.0049	0.0012448	0.74097	0.00046005	620.8772936147537	100.43	0.26059	98.161	97.926	98.187	-2.2665					6	4	2	0	0	0	0.025445	1	8960	8960		40.778	5.6261	1	11478	+		38321	20816	31615	31639	41658	41658					0.12703455518908413
MLKIISLAR	9	Unmodified	_MLKIISLAR_					0	0	0			REV__tr|A0A553STQ0|A0A553STQ0_NIACIIclRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_05130PE=4SV=1	REV__tr|A0A553STQ0|A0A553STQ0_NIACIIclRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_05130PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.2967529296875	2	522.833537	1043.65252	-0.44224	-0.00023122	-3.5714	-0.0018672	-4.0136	-0.0020985	522.8315332302705	99.478	1.0916	98.648	98.318	99.41	-0.83051					38	21	2	0	0	0	0.027441	1	9097	9097		40.778	1.972	1	36702	+		38322	30994	31616	31640	41659	41659					0.1324412977294287
MLKKIIYKM	9	2 Oxidation (M)	_M(Oxidation (M))LKKIIYKM(Oxidation (M))_		M(1)LKKIIYKM(1)		M(69)LKKIIYKM(69)	0	0	2			REV__ENST00000370708.8_2_6:56967051-56967111:+|nuORF	REV__ENST00000370708.8_2_6:56967051-56967111:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	400.5679016113281	3	400.567867	1198.68177	1.6995	0.00068077	-3.8371	-0.001537	-2.1375	-0.00085623	400.5662408903371	67.299	1.6349	67.299	67.014	68.649	0					93	40	4	0	0	0	0.24951	1	6300	6300		68.787	7.0955	1	8704000	+		38323	24968	31617	31641	41660	41660		566;567			0.09037906006938101
MLKPSSLVVV	10	Oxidation (M)	_M(Oxidation (M))LKPSSLVVV_		M(1)LKPSSLVVV		M(44)LKPSSLVVV	0	0	1		nc|ENSG00000138798|P01133-2|EGF;nc|ENSG00000138798|P01133-3|EGF;ENSG00000138798|ENST00000265171|EGF	nc|ENSG00000138798|P01133-2|EGF	nc|ENSG00000138798|P01133-2|EGF	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.8203125	2	544.822835	1087.63112	-0.96512	-0.00052582	-2.3193	-0.0012636	-3.2844	-0.0017894	544.8214508612447	117.3	1.5207	115.94	115.51	117.03	-1.3645					81	28	4	0	0	0	0.58067	1	10953	10953		44.377	6.5657	1	408830			38324	4733	31618	31642	41661	41661		153			0.09080699953574367
MLKTKVKGN	9	Unmodified	_MLKTKVKGN_					0	0	0			REV__tr|A0A553SJU3|A0A553SJU3_NIACILeucine--tRNAligaseOS=NialliacirculansOX=1397GN=leuSPE=3SV=1	REV__tr|A0A553SJU3|A0A553SJU3_NIACILeucine--tRNAligaseOS=NialliacirculansOX=1397GN=leuSPE=3SV=1	MSMS	OvCa9_classI_Rep4_	4	509.8031311035156	2	509.807519	1017.60049	NaN	NaN	NaN	NaN	NaN	NaN	NaN	157.69	1	156.14	155.64	156.64	-1.545								0	0	0	0.21255	1	15589	15589		24.519	0.31644	1		+		38325	30044	31619	31643	41662	41662					0.09238966359203005
MLKVEADLE	9	Unmodified	_MLKVEADLE_					0	0	0		ENST00000278071.6_1_10:106073096-106073477:-|nuORF	ENST00000278071.6_1_10:106073096-106073477:-|nuORF	ENST00000278071.6_1_10:106073096-106073477:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.2725830078125	2	524.273175	1046.5318	-1.2154	-0.00063721	-2.3353	-0.0012243	-3.5507	-0.0018615	524.271834383769	120.77	3.305	119.42	118.72	122.02	-1.3479					160	64	5	0	0	0	0.40818	1	11469	11469		51.193	0	1	1764900			38326	10034	31620	31644	41663	41663					0.01039257268826077
MLKVQKDLK	9	Unmodified	_MLKVQKDLK_					0	0	0		tr|A0A553SQI4|A0A553SQI4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07750PE=4SV=1;tr|A0A553SQR5|A0A553SQR5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07140PE=4SV=1	tr|A0A553SQI4|A0A553SQI4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07750PE=4SV=1;tr|A0A553SQR5|A0A553SQR5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07140PE=4SV=1	tr|A0A553SQI4|A0A553SQI4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07750PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	551.8345336914062	2	551.836277	1101.658	-0.42946	-0.00023699	-2.8873	-0.0015933	-3.3168	-0.0018303	551.8345247278378	108.43	1.6556	107.23	106.96	108.61	-1.1978					77	31	5	0	0	0	0.074342	1	7742	7742		104.75	0	1	261830			38327	34164;34189	31621	31645	41664	41664					0.11123808564775572
MLKVQKDLK	9	Unmodified	_MLKVQKDLK_					0	0	0		tr|A0A553SQI4|A0A553SQI4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07750PE=4SV=1;tr|A0A553SQR5|A0A553SQR5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07140PE=4SV=1	tr|A0A553SQI4|A0A553SQI4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07750PE=4SV=1;tr|A0A553SQR5|A0A553SQR5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07140PE=4SV=1	tr|A0A553SQI4|A0A553SQI4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07750PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	551.836277	1101.658	0.7517	0.00041482	-4.258	-0.0023497	-3.5063	-0.0019349	551.8338234002026	107.33	1.2211	107.02	106.72	107.94	-0.30836	-0.14998	-0.00083371	NaN	104.75	70	24	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	262460			38328	34164;34189	31621	31645							0.11123808564775572
MLLAALWMIL	10	Oxidation (M)	_M(Oxidation (M))LLAALWMIL_		M(1)LLAALWMIL		M(47)LLAALWM(-47)IL	0	0	1		ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	ENSG00000105929|ENST00000310018|ATP6V0A4	MULTI-MSMS	OvCa9_classI_Rep2	2	595.8358154296875	2	595.837431	1189.66031	-0.62615	-0.00037308	-0.7394	-0.00044056	-1.3656	-0.00081365	595.8369355850919	122.45	1.9732	122.24	121.97	123.94	-0.21803					88	39	3	0	0	0	0.49566	1	11857	11857		54.765	19.613	2	76830			38329	2513	31622	31646	41665	41665		82			0.0730652097820439
MLLALQRR	8	Unmodified	_MLLALQRR_					0	0	0		chr7:73736990-73737562|297|11.58|0.26|5.5|-|0|None,ABHD11|1	chr7:73736990-73737562|297|11.58|0.26|5.5|-|0|None,ABHD11|1	chr7:73736990-73737562|297|11.58|0.26|5.5|-|0|None,ABHD11|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.2889099121094	2	500.807854	999.601155	-0.7925	-0.00039689	-4.007	-0.0020067	-4.7995	-0.0024036	500.80585928876343	136.26	0.68726	136.04	135.76	136.45	-0.22696					22	13	2	0	0	0	0.028476	1	13549	13549		26.796	7.4361	1	25907			38330	531	31623	31647	41666	41666					0.10133805798921003
MLLAQLPVLN	10	Unmodified	_MLLAQLPVLN_					0	0	0			REV__tr|A0A553SRA9|A0A553SRA9_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_00720PE=3SV=1	REV__tr|A0A553SRA9|A0A553SRA9_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_00720PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	556.3318481445312	2	556.330827	1110.6471	0.19549	0.00010876	3.4301	0.0019083	3.6256	0.002017	556.3324974852751	69.386	1.1434	66.572	66.261	67.405	-2.8143					67	22	4	0	0	0	0.53885	1	3111	3111		49.442	5.3247	1	473980	+		38331	30713	31624	31648	41667	41667					0.09620406190492758
MLLCTLIIV	9	Unmodified	_MLLCTLIIV_					0	0	0			REV__tr|A0A553SMQ5|A0A553SMQ5_NIACILycopenecyclasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22970PE=4SV=1	REV__tr|A0A553SMQ5|A0A553SMQ5_NIACILycopenecyclasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22970PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	509.8031921386719	2	509.805599	1017.59665	-1.3099	-0.00066782	-2.4611	-0.0012547	-3.771	-0.0019225	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.52083	1	11037	11037		40.573	9.0428	1	99460	+		38332	30361	31625	31649	41668	41668					0.08855160541133955
MLLFFANR	8	Unmodified	_MLLFFANR_					0	0	0			REV__nc|ENSG00000129353|Q8IWA5-3|SLC44A2	REV__nc|ENSG00000129353|Q8IWA5-3|SLC44A2	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.3397216796875	2	506.275855	1010.53716	-0.90962	-0.00046052	-0.31671	-0.00016034	-1.2263	-0.00062086	506.27592395840514	137.38	0.19696	137.16	137.03	137.23	-0.22696					5	3	2	0	0	0	0.028476	1	13668	13668		14.664	0	1	10027	+		38333	18895	31626	31650	41669	41669					0.03231025641969154
MLLFPYDDF	9	Unmodified	_MLLFPYDDF_					0	0	0		nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9;nc|ENSG00000088387|Q9BZ29-6|DOCK9;DOCK9|p.T1572Kfs*7|1|0.17|ENSG00000088387|chr13:98829485-98829488|TTGG/-|frameshift_variant;ENSG00000088387|ENST00000682017|DOCK9	nc|ENSG00000088387|Q9BZ29-3|DOCK9	nc|ENSG00000088387|Q9BZ29-3|DOCK9	MULTI-MSMS	OvCa99_classI_Rep5	1	580.7728881835938	2	580.770268	1159.52598	1.5551	0.00090316	2.2902	0.0013301	3.8453	0.0022332	580.7712190227435	128.72	0.84068	128.72	128.32	129.17	0					48	17	4	0	0	0	0.34496	1	14910	14910		57.811	7.7867	1	377370			38334	14911	31627	31651	41670	41670					-0.04739841242849252
MLLGNRPF	8	Unmodified	_MLLGNRPF_					0	0	0			REV__ENSG00000214107|ENST00000397548|MAGEB1	REV__ENSG00000214107|ENST00000397548|MAGEB1	MULTI-MSMS	OvCa99_classI_Rep5	1	474.2606506347656	2	474.260205	946.505857	-0.84145	-0.00039907	-3.9335	-0.0018655	-4.775	-0.0022646	474.258169093475	104.52	1.2937	104.52	104.11	105.4	0					79	29	4	0	0	0	0.40641	1	11724	11724		86.935	10.16	1	5521500	+		38335	23284	31628	31652	41671	41671					0.03046452607873107
MLLGNRPF	8	Unmodified	_MLLGNRPF_					0	0	0			REV__ENSG00000214107|ENST00000397548|MAGEB1	REV__ENSG00000214107|ENST00000397548|MAGEB1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	474.260205	946.505857	-0.84145	-0.00039907	-3.9335	-0.0018655	-4.775	-0.0022646	474.258169093475	104.52	1.2937	104.52	104.11	105.4	0	0	0	NaN	86.935	79	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5521500	+		38336	23284	31628	31652							0.03046452607873107
MLLGSTSPTLT	11	Unmodified	_MLLGSTSPTLT_					0	0	0		nc|ENSG00000173889|Q8NDX5-4|PHC3;ENST00000474275.5_1_3:169866840-169896704:-|nuORF;nc|ENSG00000173889|Q8NDX5-3|PHC3;nc|ENSG00000173889|Q8NDX5-2|PHC3;nc|ENSG00000173889|Q8NDX5|PHC3;ENSG00000173889|ENST00000495893|PHC3	nc|ENSG00000173889|Q8NDX5-4|PHC3	nc|ENSG00000173889|Q8NDX5-4|PHC3	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.8035278320312	2	560.799557	1119.58456	3.0616	0.001717	3.384	0.0018978	6.4457	0.0036147	560.8014582088352	129.77	2.693	128.31	127.94	130.63	-1.4565					149	54	4	0	0	0	0.41398	1	12545	12545		60.118	8.5905	1	2469500			38337	7423	31629	31653	41672	41672					0.029552153316444674
MLLGVVIFMP	10	Unmodified	_MLLGVVIFMP_					0	0	0			REV__tr|A0A553SM48|A0A553SM48_NIACIPTSglucosetransportersubunitIIBCOS=NialliacirculansOX=1397GN=CEQ21_21875PE=4SV=1	REV__tr|A0A553SM48|A0A553SM48_NIACIPTSglucosetransportersubunitIIBCOS=NialliacirculansOX=1397GN=CEQ21_21875PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.2713012695312	2	560.318874	1118.6232	0.79322	0.00044446	-2.8535	-0.0015989	-2.0603	-0.0011544	560.3202179054521	114.4	1.7061	114.4	113.88	115.58	0					94	36	5	0	0	0	0.027007	1	13197	13197		19.36	0	1	3199300	+		38338	30294	31630	31654	41673	41673					0.06862849432445728
MLLHAFSIF	9	Unmodified	_MLLHAFSIF_					0	0	0			REV__L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|242|2|anti-sense	REV__L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|242|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.8194580078125	2	539.791338	1077.56812	1.9836	0.0010707	3.7063	0.0020006	5.6899	0.0030713	540.2947097253367	133.94	0.89658	133.94	133.44	134.34	0					37	18	3	0	0	0	0.027449	1	15617	15617		40.573	4.1259	1	63897	+		38339	28510	31631	31655	41674	41674					0.032441789561971746
MLLHRLYMP	9	Unmodified	_MLLHRLYMP_					0	0	0			REV__ENST00000335508.10_1_2:198257772-198257811:-|nuORF	REV__ENST00000335508.10_1_2:198257772-198257811:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.7900390625	2	587.317197	1172.61984	-0.12586	-7.3921E-05	-1.31	-0.00076936	-1.4358	-0.00084328	587.3164775408421	58.46	0.41827	58.46	58.237	58.655	0					21	9	3	0	0	0	0.027462	1	4966	4966		19.36	0	1	1276900	+		38340	24580	31632	31656	41675	41675					0.0404359937845129
MLLHTEKGLF	10	Unmodified	_MLLHTEKGLF_					0	0	0			REV__ENST00000361871.7_2_16:1988869-1989076:-|nuORF	REV__ENST00000361871.7_2_16:1988869-1989076:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	594.8279418945312	2	594.825909	1187.63727	-0.46602	-0.0002772	3.2919	0.0019581	2.8259	0.0016809	594.8280468711656	76.9	1.7487	74.529	74.033	75.781	-2.3715					90	33	4	0	0	0	0.59317	1	4005	4005		42.864	2.0861	1	1276600	+		38341	24868	31633	31657	41676	41676					0.050952181851016576
MLLHVQGRAVQ	11	Oxidation (M)	_M(Oxidation (M))LLHVQGRAVQ_		M(1)LLHVQGRAVQ		M(61)LLHVQGRAVQ	0	0	1			REV__ENST00000481804.5_1_16:775346-776019:-|nuORF	REV__ENST00000481804.5_1_16:775346-776019:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	634.3562622070312	2	634.350614	1266.68668	3.1936	0.0020259	4.3223	0.0027419	7.5159	0.0047677	634.3532575324007	90.121	0.61372	90.121	89.848	90.462	0					35	14	4	0	0	0	0.40225	1	9647	9647		60.972	9.6365	1	2599000	+		38342	26487	31634	31658	41677	41677		592			0.06399926193921601
MLLHVQGRAVQ	11	Oxidation (M)	_M(Oxidation (M))LLHVQGRAVQ_					0	0	1			REV__ENST00000481804.5_1_16:775346-776019:-|nuORF	REV__ENST00000481804.5_1_16:775346-776019:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	634.350614	1266.68668	3.1936	0.0020259	4.3223	0.0027419	7.5159	0.0047677	634.3532575324007	90.121	0.61372	90.121	89.848	90.462	0	0	0	NaN	60.972	35	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2599000	+		38343	26487	31634	31658				592			0.06399926193921601
MLLICISYA	9	Carbamidomethyl (C),Oxidation (M)	_M(Oxidation (M))LLIC(Carbamidomethyl (C))ISYA_	MLLIC(1)ISYA	M(1)LLICISYA	MLLIC(92)ISYA	M(92)LLICISYA	0	1	1		ENSG00000186881|ENST00000334726|OR13F1	ENSG00000186881|ENST00000334726|OR13F1	ENSG00000186881|ENST00000334726|OR13F1	MULTI-MSMS	OvCa99_classI_Rep5	1	550.2788696289062	2	550.279946	1098.54534	1.3757	0.00075705	-2.2187	-0.0012209	-0.84298	-0.00046387	550.2786540738983	148.35	1.2777	148.35	147.98	149.26	0					47	25	3	0	0	0	0.11842	1	17371	17371		92.191	34.379	1	264850			38344	8371	31635	31659	41678	41678	86	253			7.917764378362335E-06
MLLILGDR	8	Unmodified	_MLLILGDR_					0	0	0		L1MB7_dup1945|chr2:26113582-26114608:+|1.9674544307732185|0.2937903993333884|2.74|429.0|59|2|anti-sense	L1MB7_dup1945|chr2:26113582-26114608:+|1.9674544307732185|0.2937903993333884|2.74|429.0|59|2|anti-sense	L1MB7_dup1945|chr2:26113582-26114608:+|1.9674544307732185|0.2937903993333884|2.74|429.0|59|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	466.2717590332031	2	465.775688	929.536823	-1.1453	-0.00053346	-3.2295	-0.0015042	-4.3749	-0.0020377	465.7737571296482	86.047	1.5054	83.826	83.285	84.79	-2.2204					51	29	3	0	0	0	0.028476	1	5203	5203		35.618	0	1	180290			38345	14601	31636	31660	41679	41679					0.06923605922111165
MLLILGDR	8	Unmodified	_MLLILGDR_					0	0	0		L1MB7_dup1945|chr2:26113582-26114608:+|1.9674544307732185|0.2937903993333884|2.74|429.0|59|2|anti-sense	L1MB7_dup1945|chr2:26113582-26114608:+|1.9674544307732185|0.2937903993333884|2.74|429.0|59|2|anti-sense	L1MB7_dup1945|chr2:26113582-26114608:+|1.9674544307732185|0.2937903993333884|2.74|429.0|59|2|anti-sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	465.775688	929.536823	-1.7265	-0.00080416	-1.2973	-0.00060427	-3.0238	-0.0014084	465.77439553458026	85.317	0.83932	83.826	83.456	84.295	-1.4906	0.023149	0.0017283	NaN	35.618	51	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77892			38346	14601	31636	31660							0.06923605922111165
MLLILGDR	8	Unmodified	_MLLILGDR_					0	0	0		L1MB7_dup1945|chr2:26113582-26114608:+|1.9674544307732185|0.2937903993333884|2.74|429.0|59|2|anti-sense	L1MB7_dup1945|chr2:26113582-26114608:+|1.9674544307732185|0.2937903993333884|2.74|429.0|59|2|anti-sense	L1MB7_dup1945|chr2:26113582-26114608:+|1.9674544307732185|0.2937903993333884|2.74|429.0|59|2|anti-sense	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	465.775688	929.536823	1.1958	0.00055699	-5.6042	-0.0026103	-4.4084	-0.0020533	465.7727608911247	86.383	0.98613	83.756	83.363	84.349	-2.6269	-0.046629	-0.0022838	NaN	35.618	49	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147430			38347	14601	31636	31660							0.06923605922111165
MLLILGWIF	9	Unmodified	_MLLILGWIF_					0	0	0		SLC5A4|p.P348Mfs*18|1|0.33|ENSG00000100191|chr22:32231056-32231057|-/TGGATTGAATTAATGGAAGGTGCAAGAATTGCACCATA|frameshift_variant;SLC5A4|p.C517Ffs*46|1|0.16|ENSG00000100191|chr22:32224382-32224383|-/CATACATGCATACAATAAAAGGCAAAGA|frameshift_variant;ENSG00000100191|ENST00000266086|SLC5A4	SLC5A4|p.P348Mfs*18|1|0.33|ENSG00000100191|chr22:32231056-32231057|-/TGGATTGAATTAATGGAAGGTGCAAGAATTGCACCATA|frameshift_variant	SLC5A4|p.P348Mfs*18|1|0.33|ENSG00000100191|chr22:32231056-32231057|-/TGGATTGAATTAATGGAAGGTGCAAGAATTGCACCATA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	553.3272705078125	2	553.327556	1104.64056	0.69489	0.0003845	-1.4908	-0.00082491	-0.79593	-0.00044041	553.3266810484581	141.42	2.3828	141.42	141.08	143.46	0					111	47	5	0	0	0	0.32242	1	16594	16594		60.404	10.962	1	957920			38348	2022	31637	31661	41680	41680					0.09242513029766997
MLLIWCLS	8	Unmodified	_MLLIWCLS_					0	0	0		ENST00000417185.6_1_3:38049657-38049795:-|nuORF	ENST00000417185.6_1_3:38049657-38049795:-|nuORF	ENST00000417185.6_1_3:38049657-38049795:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.24267578125	2	489.761192	977.507831	-0.31746	-0.00015548	2.633	0.0012895	2.3155	0.0011341	489.7624589262636	65.284	0.43068	65.284	64.916	65.347	0					13	10	2	0	0	0	0.028476	1	5982	5982		39.021	8.5179	1	1109600			38349	11617	31638	31662	41681	41681					0.018177453014459388
MLLKCKEN	8	Carbamidomethyl (C),Oxidation (M)	_M(Oxidation (M))LLKC(Carbamidomethyl (C))KEN_	MLLKC(1)KEN	M(1)LLKCKEN	MLLKC(88)KEN	M(88)LLKCKEN	0	1	1			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	OvCa99_classI_Rep5	1	526.2677612304688	2	526.26737	1050.52019	2.0172	0.0010616	-3.3846	-0.0017812	-1.3674	-0.00071963	526.2654731290527	99.699	0.57826	99.699	99.361	99.939	0					26	13	3	0	0	0	0.40148	1	11029	11029		87.754	8.0417	1	601080	+		38350	22731	31639	31663	41682	41682	265	527			-0.0030526302614362066
MLLKCKEN	8	Carbamidomethyl (C),Oxidation (M)	_M(Oxidation (M))LLKC(Carbamidomethyl (C))KEN_					0	1	1			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	526.26737	1050.52019	2.0172	0.0010616	-3.3846	-0.0017812	-1.3674	-0.00071963	526.2654731290527	99.699	0.57826	99.699	99.361	99.939	0	0	0	NaN	87.754	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	601080	+		38351	22731	31639	31663			265	527			-0.0030526302614362066
MLLKLNAQV	9	Unmodified	_MLLKLNAQV_					0	0	0			REV__ENST00000497446.5_1_7:107332392-107334073:+|nuORF	REV__ENST00000497446.5_1_7:107332392-107334073:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.3095092773438	2	515.309895	1028.60524	-0.86395	-0.0004452	-0.36811	-0.00018969	-1.2321	-0.00063489	515.3096728727091	99.459	2.081	97.134	96.743	98.824	-2.3253					63	40	2	0	0	0	0.48324	1	9066	9066		44.117	4.864	1	2107800	+		38352	26386	31640	31664	41683	41683					0.09207850501957182
MLLKLPLIN	9	Unmodified	_MLLKLPLIN_					0	0	0		tr|A0A553SHG2|A0A553SHG2_NIACIPolysaccharidebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_12860PE=4SV=1	tr|A0A553SHG2|A0A553SHG2_NIACIPolysaccharidebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_12860PE=4SV=1	tr|A0A553SHG2|A0A553SHG2_NIACIPolysaccharidebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_12860PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.86181640625	2	527.838288	1053.66202	-0.87913	-0.00046404	3.978	0.0020998	3.0989	0.0016357	528.3415648350029	59.464	0.98741	59.464	58.852	59.839	0					55	25	3	0	0	0	0.027392	1	5102	5102		63.306	9.9548	1	1943500			38353	33269	31641	31665	41684	41684					0.1373389805851275
MLLKSIFIV	9	Oxidation (M)	_M(Oxidation (M))LLKSIFIV_		M(1)LLKSIFIV		M(67)LLKSIFIV	0	0	1		nc|ENSG00000133739|Q9C099-2|LRRCC1	nc|ENSG00000133739|Q9C099-2|LRRCC1	nc|ENSG00000133739|Q9C099-2|LRRCC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3336181640625	2	540.330296	1078.64604	3.3207	0.0017943	3.8478	0.0020791	7.1685	0.0038734	540.3322174762676	131.73	3.1393	130.23	129.77	132.91	-1.5015					134	63	4	0	0	0	0.26076	1	12711	12711		67.494	14.142	1	310750			38354	15022	31642	31666	41685	41685		366			0.1098619182157563
MLLLFELAR	9	Unmodified	_MLLLFELAR_					0	0	0		CFAP46|p.S310Vfs*18|1|0.56|ENSG00000171811|chr10:132929743-132929744|-/TGTTCTGGATCATCAGCATCATGAAATTTTAC|frameshift_variant;nc|ENSG00000171811|Q8IYW2-2|CFAP46;ENSG00000171811|ENST00000368586|CFAP46	CFAP46|p.S310Vfs*18|1|0.56|ENSG00000171811|chr10:132929743-132929744|-/TGTTCTGGATCATCAGCATCATGAAATTTTAC|frameshift_variant	CFAP46|p.S310Vfs*18|1|0.56|ENSG00000171811|chr10:132929743-132929744|-/TGTTCTGGATCATCAGCATCATGAAATTTTAC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	553.32275390625	2	553.325545	1104.63654	0.7292	0.00040348	-4.2926	-0.0023752	-3.5634	-0.0019717	553.3230718012305	114.16	0.6373	114.16	113.92	114.56	0					28	13	4	0	0	0	0.053172	1	13022	13022		116.9	14.13	1	1029800			38355	228	31643	31667	41686	41686					0.08840423536048547
MLLLFLHA	8	Oxidation (M)	_M(Oxidation (M))LLLFLHA_		M(1)LLLFLHA		M(67)LLLFLHA	0	0	1			REV__ENSG00000254656|ENST00000649591|RTL1	REV__ENSG00000254656|ENST00000649591|RTL1	MULTI-MSMS	OvCa99_classI_Rep5	1	487.2840576171875	2	487.280606	972.546659	1.0386	0.00050611	3.6621	0.0017845	4.7008	0.0022906	487.2822542159637	132.69	1.5469	132.69	132.36	133.91	0					74	32	4	0	0	0	0.58426	1	15480	15480		67.327	9.5159	1	1424800	+		38356	23519	31644	31668	41687	41687		548			0.05928793927478182
MLLLLLGLG	9	Unmodified	_MLLLLLGLG_					0	0	0			REV__ENSG00000125735|ENST00000675206|TNFSF14	REV__ENSG00000125735|ENST00000675206|TNFSF14	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.8092346191406	2	471.806457	941.598361	1.4167	0.00066842	2.3712	0.0011188	3.7879	0.0017872	471.80746933293995	68.283	1.3258	64.793	64.526	65.852	-3.4902					61	26	4	0	0	0	0.42921	1	5068	5068		49.211	6.7363	1	523870	+		38357	18741	31646	31669	41688	41688					0.12522537621396168
MLLLLPKW	8	Unmodified	_MLLLLPKW_					0	0	0		ENST00000416322.5_1_7:90014358-90014463:+|nuORF	ENST00000416322.5_1_7:90014358-90014463:+|nuORF	ENST00000416322.5_1_7:90014358-90014463:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	507.3157958984375	2	507.314449	1012.61435	-0.96298	-0.00048854	3.0816	0.0015634	2.1187	0.0010748	507.3158623915197	117.79	1.8845	116.76	116.44	118.32	-1.0324					99	37	4	0	0	0	0.64377	1	8893	8893		54.765	3.4292	1	576140			38358	11602	31647	31670	41689	41689					0.10854243858295831
MLLLPWPMA	9	Unmodified	_MLLLPWPMA_					0	0	0		ENST00000511828.1_1_4:100575555-100575762:-|nuORF	ENST00000511828.1_1_4:100575555-100575762:-|nuORF	ENST00000511828.1_1_4:100575555-100575762:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.2723999023438	2	536.290117	1070.56568	3.7905	0.0020328	-2.1166	-0.0011351	1.6738	0.00089767	536.2890231413575	88.232	0.25407	88.232	88.13	88.384	0					7	5	2	0	0	0	0.027462	1	9385	9385		21.702	0	1	171940			38359	12989	31648	31671	41690	41690					0.033220072268704826
MLLLSLFQP	9	Unmodified	_MLLLSLFQP_					0	0	0			REV__ENST00000378350.4_17:34540017-34540089:+|nuORF	REV__ENST00000378350.4_17:34540017-34540089:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	531.3082275390625	2	531.306821	1060.59909	1.679	0.00089207	0.70416	0.00037412	2.3832	0.0012662	531.3068350074458	135.56	0.79881	135.56	135.22	136.02	0					35	16	3	0	0	0	0.19758	1	15789	15789		76.774	2.2575	1	208990	+		38360	25139	31649	31672	41691	41691					0.0712133227045797
MLLPFHHLC	9	Unmodified	_MLLPFHHLC_					0	0	0		ENST00000369454.3_1_X:154493667-154493862:-|nuORF	ENST00000369454.3_1_X:154493667-154493862:-|nuORF	ENST00000369454.3_1_X:154493667-154493862:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	555.779052734375	2	555.78299	1109.55143	-1.1588	-0.00064404	-2.9401	-0.001634	-4.0989	-0.0022781	555.781230200271	62.553	1.6061	59.805	59.445	61.051	-2.748					65	30	4	0	0	0	0.53728	1	4698	4698		39.021	7.4917	1	186800			38361	10896	31650	31673	41692	41692					0.0010335479862533248
MLLPWLPKL	9	Unmodified	_MLLPWLPKL_					0	0	0		ENST00000566243.5_2_15:74969356-74988325:-|nuORF;ENST00000568176.5_2_15:74967332-74988325:-|nuORF	ENST00000566243.5_2_15:74969356-74988325:-|nuORF	ENST00000566243.5_2_15:74969356-74988325:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	555.8402709960938	2	555.840831	1109.66711	1.2272	0.00068212	0.38136	0.00021197	1.6085	0.00089409	555.841082358626	154.54	0.84814	154.54	154.22	155.07	0					29	16	3	0	0	0	0.32337	1	18108	18108		60.294	2.064	1	76696			38362	13843	31651	31674	41693	41693					0.11666201921093489
MLLQQPLIY	9	Unmodified	_MLLQQPLIY_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MULTI-MSMS	OvCa99_classI_Rep5	1	559.8147583007812	2	559.817553	1117.62055	2.0741	0.0011611	-3.468	-0.0019415	-1.3939	-0.00078031	559.8156915922438	133.1	8.2265	133.1	132.6	140.83	0					464	175	6	0	0	0	0.34496	1	15626	15626		57.811	1.0902	1	47573000			38363	2511	31652	31675	41694	41694					0.06644717299172953
MLLQQPLIY	9	Unmodified	_MLLQQPLIY_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MULTI-MSMS	OvCa9_classI_Rep3	3	559.8146362304688	2	559.817553	1117.62055	-0.97773	-0.00054735	-2.2404	-0.0012542	-3.2182	-0.0018016	559.8160584775942	134.25	2.5628	133.13	132.52	135.08	-1.1226					125	51	4	0	0	0	0.53957	1	10870	10870		38.806	6.8513	1	225320			38364	2511	31652	31675	41695	41695					0.06644717299172953
MLLQSPVTLP	10	Unmodified	_MLLQSPVTLP_					0	0	0		ENST00000496279.5_1_7:90338868-90339238:+|nuORF	ENST00000496279.5_1_7:90338868-90339238:+|nuORF	ENST00000496279.5_1_7:90338868-90339238:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.8116455078125	2	549.81501	1097.61547	-1.4658	-0.00080592	-1.6132	-0.00088694	-3.079	-0.0016929	549.8139391157771	127.11	1.6247	125.67	125.29	126.92	-1.4357					64	31	3	0	0	0	0.66944	1	12133	12133		33.922	0.40605	1	78823			38365	12784	31653	31676	41696	41696					0.07056413436544062
MLLRTKRW	8	Unmodified	_MLLRTKRW_					0	0	0			REV__ENST00000375127.5_2_1:20125706-20125814:-|nuORF	REV__ENST00000375127.5_2_1:20125706-20125814:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	552.3283081054688	2	552.328953	1102.64335	2.1245	0.0011734	-4.4829	-0.002476	-2.3584	-0.0013026	552.3264511784496	121.87	1.5228	121.87	121.57	123.09	0					93	32	5	0	0	0	0.53531	1	14107	14107		73.975	5.1879	1	7703000	+		38366	25082	31654	31677	41697	41697					0.09613781207281136
MLLRVISSGS	10	Unmodified	_MLLRVISSGS_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2;HSPG2|p.R2480Gfs*14|1|0.14|ENSG00000142798|chr1:21850049-21850049|G/-|frameshift_variant;HSPG2|p.S2573Afs*18|1|0.18|ENSG00000142798|chr1:21848664-21848664|G/-|frameshift_variant;ENST00000439717.2_1_1:22216375-22222731:-|nuORF;HSPG2|p.R543Lfs*3|1|0.16|ENSG00000142798|chr1:21884554-21884555|-/A|frameshift_variant;HSPG2|p.C521Lfs*33|1|0.07|ENSG00000142798|chr1:21884620-21884621|-/TCCAGGTGTGTTGTAAGCCTGGGCA|frameshift_variant	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8014526367188	2	531.802434	1061.59032	-0.1228	-6.5303E-05	-3.3	-0.001755	-3.4228	-0.0018203	531.800515981788	118.08	1.1889	117.05	116.54	117.73	-1.0324					51	23	4	0	0	0	0.55359	1	8904	8904		47.657	1.7054	1	254040			38367	4996	31655	31678	41698	41698					0.06198358633969292
MLLSLTYRPL	10	Oxidation (M)	_M(Oxidation (M))LLSLTYRPL_		M(1)LLSLTYRPL		M(70)LLSLTYRPL	0	0	1		ENSG00000147100|ENST00000587091|SLC16A2	ENSG00000147100|ENST00000587091|SLC16A2	ENSG00000147100|ENST00000587091|SLC16A2	MULTI-MSMS	OvCa99_classI_Rep5	1	611.8438110351562	2	611.846842	1221.67913	1.338	0.00081863	2.5587	0.0015655	3.8967	0.0023842	611.8480012250403	123.56	0.91865	123.56	123.14	124.06	0					57	19	4	0	0	0	0.39172	1	14284	14284		69.628	16.691	1	1304000			38368	5330	31656	31679	41699	41699		174			0.07715773873610487
MLLTPSYLLM	10	Unmodified	_MLLTPSYLLM_					0	0	0			REV__ENST00000359943.7_1_7:120990008-120990050:-|nuORF	REV__ENST00000359943.7_1_7:120990008-120990050:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	590.8590087890625	2	591.319071	1180.62359	2.8592	0.0016907	-0.063488	-3.7542E-05	2.7957	0.0016532	591.3188034613099	87.932	0.92087	87.932	87.505	88.426	0					62	21	5	0	0	0	0.026982	1	9293	9293		23.042	16.73	1	2709000	+		38369	24821	31657	31680	41700	41700					0.040502243616401756
MLLTRFYS	8	Unmodified	_MLLTRFYS_					0	0	0			REV__nc|ENSG00000120697|Q9Y673-2|ALG5	REV__nc|ENSG00000120697|Q9Y673-2|ALG5	MULTI-MSMS	OvCa99_classI_Rep5	1	515.7756958007812	2	515.773145	1029.53174	0.90793	0.00046829	0.98371	0.00050737	1.8916	0.00097566	515.7736562753566	155.48	0.66565	155.48	155.17	155.84	0					24	12	3	0	0	0	0.57878	1	18231	18231		68.485	7.5128	1	143610	+		38370	18510	31658	31681	41701	41701					0.018153020594809277
MLLVLQKSAS	10	Unmodified	_MLLVLQKSAS_					0	0	0		ENST00000432916.5_1_22:45122508-45132738:+|nuORF	ENST00000432916.5_1_22:45122508-45132738:+|nuORF	ENST00000432916.5_1_22:45122508-45132738:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3167114257812	2	545.32046	1088.62637	-2.8527	-0.0015556	-4.0579	-0.0022129	-6.9106	-0.0037685	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.71173	1	11868	11868		29.17	9.9074	1	337600			38371	11819	31659	31682	41702	41702					0.08559815810826876
MLLWTYSK	8	Unmodified	_MLLWTYSK_					0	0	0			REV__chr15:89584527-89585708|373|10.39|0.39|4.73|+|1|TICRR,TICRR|3	REV__chr15:89584527-89585708|373|10.39|0.39|4.73|+|1|TICRR,TICRR|3	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.2976684570312	2	521.275521	1040.53649	1.391	0.00072509	3.4946	0.0018217	4.8856	0.0025467	521.2774234976426	117.48	0.33121	117.48	117.32	117.65	0					11	6	2	0	0	0	0.028476	1	13469	13469		58.782	7.4465	1	47495	+		38372	15926	31660	31683	41703	41703					0.017841862022578425
MLLYFMSLST	10	Unmodified	_MLLYFMSLST_					0	0	0			REV__TAS2R30|p.R109M|1|0.05|ENSG00000256188|chr12:11133919-11133919|C/A|missense_variant	REV__TAS2R30|p.R109M|1|0.05|ENSG00000256188|chr12:11133919-11133919|C/A|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	603.3063354492188	2	603.300878	1204.5872	2.1249	0.0012819	3.7055	0.0022356	5.8304	0.0035175	603.8046381545558	112.99	3.5867	112.99	111.16	114.74	0					164	80	3	0	0	0	0.45225	1	12946	12946		60.972	8.0352	1	1182000	+		38373	29484	31661	31684	41704	41704					-0.0069065253505868895
MLMDIVIIT	9	Unmodified	_MLMDIVIIT_					0	0	0			REV__ENST00000539029.5_1_12:7068505-7070080:+|nuORF	REV__ENST00000539029.5_1_12:7068505-7070080:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.2721557617188	2	524.792689	1047.57083	-0.67583	-0.00035467	-1.0932	-0.00057371	-1.769	-0.00092838	524.7923385319422	99.413	0.64564	98.582	98.318	98.964	-0.83052					21	12	2	0	0	0	0.027462	1	9079	9079		25.45	0	1	23958	+		38374	18048	31662	31685	41705	41705					0.04894266298833827
MLMLGRLV	8	Unmodified	_MLMLGRLV_					0	0	0		SLC2A3|p.I121M|1|0.24|ENSG00000059804|chr12:7931392-7931392|G/C|missense_variant	SLC2A3|p.I121M|1|0.24|ENSG00000059804|chr12:7931392-7931392|G/C|missense_variant	SLC2A3|p.I121M|1|0.24|ENSG00000059804|chr12:7931392-7931392|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.7750549316406	2	466.774634	931.534715	-0.7831	-0.00036553	-0.040605	-1.8954E-05	-0.8237	-0.00038448	466.7745267950524	66.221	1.8163	62.731	62.418	64.235	-3.4902					91	36	4	0	0	0	0.72922	1	4822	4822		37.028	1.8278	1	1043100			38375	32828	31663	31686	41706	41706					0.06620853912647817
MLMMMTGLTPQ	11	2 Oxidation (M)	_MLM(Oxidation (M))M(Oxidation (M))MTGLTPQ_		MLM(0.998)M(0.501)M(0.501)TGLTPQ		M(-41)LM(24)M(0)M(0)TGLTPQ	0	0	2		ENST00000369976.5_1_1:109492941-109493010:-|nuORF	ENST00000369976.5_1_1:109492941-109493010:-|nuORF	ENST00000369976.5_1_1:109492941-109493010:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	643.286376953125	2	643.286588	1284.55862	1.8125	0.001166	-3.5179	-0.002263	-1.7053	-0.001097	643.2847432566648	148.65	1.9169	148.65	148.13	150.05	0					112	38	5	0	0	0	0.21979	1	17377	17377		77.318	6.5014	6	1884800			38376	10912	31664	31687	41707	41707		307;308;309			-0.07227461498155208
MLMNWIKN	8	Unmodified	_MLMNWIKN_					0	0	0		tr|A0A7D7A0U4|A0A7D7A0U4_9CLOTM50familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11160PE=4SV=1	tr|A0A7D7A0U4|A0A7D7A0U4_9CLOTM50familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11160PE=4SV=1	tr|A0A7D7A0U4|A0A7D7A0U4_9CLOTM50familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11160PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2938232421875	2	525.267173	1048.51979	0.67654	0.00035536	4.1716	0.0021912	4.8481	0.0025465	525.2693154046682	139.53	0.60706	139.53	139.17	139.78	0					17	12	2	0	0	0	0.028476	1	16282	16282		57.811	14.947	1	60846			38377	36009	31665	31688	41708	41708					-0.0025263795535011013
MLMRTTLPL	9	Oxidation (M)	_M(Oxidation (M))LMRTTLPL_		M(0.993)LM(0.007)RTTLPL		M(22)LM(-22)RTTLPL	0	0	1		ENST00000545712.6_1_12:109994069-109994195:-|nuORF	ENST00000545712.6_1_12:109994069-109994195:-|nuORF	ENST00000545712.6_1_12:109994069-109994195:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	546.3043212890625	2	546.301213	1090.58787	-0.2131	-0.00011642	2.7784	0.0015178	2.5653	0.0014014	546.3025770219067	114.62	1.3818	114.5	114.16	115.54	-0.11777					62	27	3	0	0	0	0.31747	1	10926	10926		60.972	6.2073	2	158540			38378	13525	31666	31689	41709	41709		350			0.0462018690466266
MLNDELKCVN	10	Unmodified	_MLNDELKCVN_					0	0	0		ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.779052734375	2	589.780841	1177.54713	-1.6016	-0.00094457	-1.5229	-0.00089818	-3.1245	-0.0018428	589.7798878399616	126.92	1.9262	125.49	125.15	127.07	-1.4357					52	37	2	0	0	0	0.59317	1	12091	12091		42.864	7.246	1	186430			38379	8305	31667	31690	41710	41710					-0.03454199205611985
MLNIEKIK	8	Unmodified	_MLNIEKIK_					0	0	0		tr|A0A7D7A4I5|A0A7D7A4I5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03260PE=3SV=1	tr|A0A7D7A4I5|A0A7D7A4I5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03260PE=3SV=1	tr|A0A7D7A4I5|A0A7D7A4I5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03260PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	494.7953796386719	2	494.79662	987.578688	-0.76721	-0.00037961	-2.6336	-0.0013031	-3.4008	-0.0016827	494.79526614452374	97.354	1.3125	95.595	95.053	96.365	-1.7595					53	25	3	0	0	0	0.40148	1	6452	6452		87.754	8.0417	1	520140			38380	36146	31668	31691	41711	41711					0.08440161610633368
MLNIRFSQS	9	Unmodified	_MLNIRFSQS_					0	0	0			REV__ENST00000268182.9_1_15:91026791-91027525:+|nuORF	REV__ENST00000268182.9_1_15:91026791-91027525:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.3134765625	2	548.284408	1094.55426	2.0833	0.0011423	0.25877	0.00014188	2.3421	0.0012841	548.2844973687651	110.58	0.31345	110.58	110.4	110.71	0					11	6	2	0	0	0	0.027462	1	12534	12534		27.882	13.745	1	73994	+		38381	24054	31669	31692	41712	41712					0.010769014571224034
MLNLILLDP	9	Unmodified	_MLNLILLDP_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L2159Ffs*20|1|0.06|ENSG00000261150|chr8:143866777-143866778|-/G|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.29150390625	2	521.304278	1040.594	1.8315	0.00095479	1.703	0.00088777	3.5345	0.0018426	521.8081444308137	96.618	0.25075	96.618	96.459	96.71	0					6	5	2	0	0	0	0.027462	1	10600	10600		29.15	0	1	239360			38382	9498	31670	31693	41713	41713					0.07533028407829079
MLNQNHIVY	9	Unmodified	_MLNQNHIVY_					0	0	0		ENST00000453185.5_1_1:29522511-29533334:-|nuORF	ENST00000453185.5_1_1:29522511-29533334:-|nuORF	ENST00000453185.5_1_1:29522511-29533334:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	566.2825317382812	2	566.284408	1130.55426	0.10353	5.8626E-05	-3.8044	-0.0021544	-3.7009	-0.0020957	566.2822211008561	96.266	1.6313	95.238	94.615	96.246	-1.0281					77	32	4	0	0	0	0.27546	1	8694	8694		65.803	9.3694	1	436830			38383	12069	31671	31694	41714	41714					-0.0057909854290301155
MLNRRLKN	8	Unmodified	_MLNRRLKN_					0	0	0		ENST00000383794.6_1_3:14697081-14697126:+|nuORF	ENST00000383794.6_1_3:14697081-14697126:+|nuORF	ENST00000383794.6_1_3:14697081-14697126:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	522.8073120117188	2	522.808385	1043.60222	1.2142	0.0006348	0.0083162	4.3478E-06	1.2225	0.00063915	522.8081793589023	111.08	1.3487	111.08	110.67	112.02	0					50	29	2	0	0	0	0.47599	1	12637	12637		79.939	11.152	1	1414600			38384	11190	31672	31695	41715	41715					0.08216020167810711
MLNRSLLALP	10	Unmodified	_MLNRSLLALP_					0	0	0			REV__ENST00000532896.5_1_19:18304624-18307257:+|nuORF	REV__ENST00000532896.5_1_19:18304624-18307257:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	564.331787109375	2	564.333901	1126.65325	-1.0056	-0.0005675	-2.5092	-0.001416	-3.5148	-0.0019835	564.3321744807142	117.4	1.5874	117.27	116.91	118.5	-0.12869					87	31	4	0	0	0	0.59317	1	11253	11253		42.864	1.4377	1	307740	+		38385	27248	31673	31696	41716	41716					0.0949892442199598
MLNRSLLALP	10	Unmodified	_MLNRSLLALP_					0	0	0			REV__ENST00000532896.5_1_19:18304624-18307257:+|nuORF	REV__ENST00000532896.5_1_19:18304624-18307257:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	564.3322143554688	2	564.333901	1126.65325	-0.434	-0.00024492	-3.2614	-0.0018405	-3.6954	-0.0020855	564.3317149048064	118.34	1.4386	117.3	116.89	118.32	-1.0324					67	28	4	0	0	0	0.40664	3	8928	8916;8922;8928		67.494	1.744	1	367330	+		38386	27248	31673	31696	41717;41718;41719	41719					0.0949892442199598
MLNVPSQSF	9	Unmodified	_MLNVPSQSF_					0	0	0		ENSG00000065615|ENST00000369681|CYB5R4	ENSG00000065615|ENST00000369681|CYB5R4	ENSG00000065615|ENST00000369681|CYB5R4	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.3328857421875	2	511.75241	1021.49027	1.8371	0.00094014	3.2829	0.00168	5.12	0.0026202	511.7541183988687	128.14	0.42198	128.14	128	128.42	0					11	8	2	0	0	0	0.027461	1	14857	14857		32.812	10.853	1	54847			38387	1334	31674	31697	41720	41720					-0.01961878699830777
MLPAIQKMI	9	2 Oxidation (M)	_M(Oxidation (M))LPAIQKM(Oxidation (M))I_		M(1)LPAIQKM(1)I		M(100)LPAIQKM(100)I	0	0	2		tr|A0A553SQB8|A0A553SQB8_NIACIMajorcapsidproteinOS=NialliacirculansOX=1397GN=CEQ21_24445PE=4SV=1	tr|A0A553SQB8|A0A553SQB8_NIACIMajorcapsidproteinOS=NialliacirculansOX=1397GN=CEQ21_24445PE=4SV=1	tr|A0A553SQB8|A0A553SQB8_NIACIMajorcapsidproteinOS=NialliacirculansOX=1397GN=CEQ21_24445PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	538.8009033203125	2	538.795763	1075.57697	1.5865	0.00085483	3.9619	0.0021347	5.5484	0.0029895	538.7977537797806	125.03	1.0608	125.03	124.65	125.71	0					51	25	3	0	0	0	0.085069	1	14433	14433		101.21	18.907	1	546100			38388	34143	31675	31698	41721	41721		752;753			0.0422078453038921
MLPDMLAKMKP	11	Unmodified	_MLPDMLAKMKP_					0	0	0			REV__ENST00000375286.7_1_17:73059974-73060100:+|nuORF	REV__ENST00000375286.7_1_17:73059974-73060100:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	637.8363037109375	2	637.837105	1273.65966	0.50997	0.00032528	-3.373	-0.0021514	-2.863	-0.0018261	637.8347414740941	142.3	0.5274	140.83	140.55	141.08	-1.4627					25	9	3	0	0	0	0.60323	1	13927	13927		44.377	6.5657	1	75593	+		38389	25085	31676	31699	41722	41722					0.033773582668345625
MLPFCRVLL	9	Carbamidomethyl (C)	_MLPFC(Carbamidomethyl (C))RVLL_	MLPFC(1)RVLL		MLPFC(53)RVLL		0	1	0			REV__ENST00000325102.12_2_17:73262571-73262763:-|nuORF	REV__ENST00000325102.12_2_17:73262571-73262763:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	574.8181762695312	2	574.819573	1147.62459	1.886	0.0010841	0.34787	0.00019996	2.2339	0.0012841	574.8197072068025	120.36	0.42167	120.36	120.18	120.61	0					21	10	3	0	0	0	0.38529	1	13847	13847		53.351	8.9743	1	770350	+		38390	24482	31677	31700	41723	41723	292				0.05668483521208145
MLPFCRVLL	9	Carbamidomethyl (C)	_MLPFC(Carbamidomethyl (C))RVLL_					0	1	0			REV__ENST00000325102.12_2_17:73262571-73262763:-|nuORF	REV__ENST00000325102.12_2_17:73262571-73262763:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	574.819573	1147.62459	1.886	0.0010841	0.34787	0.00019996	2.2339	0.0012841	574.8197072068025	120.36	0.42167	120.36	120.18	120.61	0	0	0	NaN	53.351	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	770350	+		38391	24482	31677	31700			292				0.05668483521208145
MLPFIAVLF	9	Unmodified	_MLPFIAVLF_					0	0	0		tr|A0A553SSF3|A0A553SSF3_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_03015PE=4SV=1	tr|A0A553SSF3|A0A553SSF3_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_03015PE=4SV=1	tr|A0A553SSF3|A0A553SSF3_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_03015PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.778564453125	2	525.806457	1049.59836	1.2388	0.00065134	4.0188	0.0021131	5.2575	0.0027644	525.8082848546198	118.93	0.61533	118.93	118.58	119.19	0					18	12	2	0	0	0	0.027462	1	13605	13605		39.021	0	1	57461			38392	34371	31678	31701	41724	41724					0.07554537621376767
MLPHLSLLV	9	Unmodified	_MLPHLSLLV_					0	0	0		ENST00000399302.6_2_11:32948710-32949534:+|nuORF	ENST00000399302.6_2_11:32948710-32949534:+|nuORF	ENST00000399302.6_2_11:32948710-32949534:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.2696533203125	2	511.806988	1021.59942	-0.73827	-0.00037785	2.4305	0.0012439	1.6922	0.00086609	511.80810917568914	89.119	0.29349	86.516	86.286	86.58	-2.6027					8	5	2	0	0	0	0.027462	1	7627	7627		25.45	0	1	33697			38393	11385	31679	31702	41725	41725					0.08948751990294568
MLPILKSEE	9	Unmodified	_MLPILKSEE_					0	0	0			REV__ITSN2|p.Q316Lfs*62|1|0.25|ENSG00000198399|chr2:24301989-24302013|GGAGGTAAAGTCAGTGGTAATGGCT/-|frameshift_variant	REV__ITSN2|p.Q316Lfs*62|1|0.25|ENSG00000198399|chr2:24301989-24302013|GGAGGTAAAGTCAGTGGTAATGGCT/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7968139648438	2	530.291368	1058.56818	3.207	0.0017007	-0.40445	-0.00021447	2.8026	0.0014862	530.2912991109991	97.426	0.12578	97.426	97.353	97.479	0					4	2	2	0	0	0	0.027433	1	10694	10694		57.811	15.337	1	526230	+		38394	28320	31680	31703	41726	41726					0.041241341655450015
MLPIRWMP	8	Oxidation (M)	_M(Oxidation (M))LPIRWMP_		M(1)LPIRWMP		M(48)LPIRWM(-48)P	0	0	1		ENST00000530298.5_1_1:156845639-156851431:+|nuORF;nc|ENSG00000198400|P04629-4|NTRK1;nc|ENSG00000198400|P04629-3|NTRK1;nc|ENSG00000198400|P04629-2|NTRK1;ENSG00000198400|ENST00000524377|NTRK1;nc|ENSG00000140538|Q16288-5|NTRK3;nc|ENSG00000140538|Q16288-3|NTRK3;nc|ENSG00000140538|Q16288-4|NTRK3;ENSG00000140538|ENST00000629765|NTRK3;nc|ENSG00000148053|Q16620|NTRK2;ENSG00000148053|ENST00000277120|NTRK2	ENST00000530298.5_1_1:156845639-156851431:+|nuORF;nc|ENSG00000148053|Q16620|NTRK2	nc|ENSG00000148053|Q16620|NTRK2	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.2796020507812	2	530.277541	1058.54053	-0.62605	-0.00033198	2.6913	0.0014271	2.0653	0.0010952	530.2788281945986	123.12	1.4855	121.76	121.11	122.59	-1.3666					60	29	3	0	0	0	0.60486	1	11654	11654		62.978	13.442	2	110560			38395	8816;5384	31681	31704	41727	41727		178			0.013599524243090855
MLPIWLLK	8	Unmodified	_MLPIWLLK_					0	0	0		tr|A0A553SQR9|A0A553SQR9_NIACIActin-likeproteinN-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07175PE=4SV=1	tr|A0A553SQR9|A0A553SQR9_NIACIActin-likeproteinN-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07175PE=4SV=1	tr|A0A553SQR9|A0A553SQR9_NIACIActin-likeproteinN-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07175PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.31585693359375	2	507.314449	1012.61435	-1.2891	-0.00065398	3.665	0.0018593	2.3759	0.0012053	507.3161252150664	116.87	1.585	116.74	116.42	118	-0.12869					86	31	4	0	0	0	0.72134	2	11201	11201;11213		39.021	1.993	1	305710			38396	34190	31682	31705	41728;41729	41728					0.10854243858295831
MLPLPPSLP	9	Unmodified	_MLPLPPSLP_					0	0	0		ENST00000370629.6_1_X:135730352-135730547:+|nuORF	ENST00000370629.6_1_X:135730352-135730547:+|nuORF	ENST00000370629.6_1_X:135730352-135730547:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.7832946777344	2	482.780439	963.546325	-0.8914	-0.00043035	4.4547	0.0021506	3.5633	0.0017203	482.78240925128404	81.313	1.3593	78.603	78.248	79.608	-2.7106					75	27	4	0	0	0	0.25214	1	6688	6688		68.485	23.954	1	595370			38397	10936	31683	31706	41730	41730					0.06309374207626206
MLPLPPSLP	9	Unmodified	_MLPLPPSLP_					0	0	0		ENST00000370629.6_1_X:135730352-135730547:+|nuORF	ENST00000370629.6_1_X:135730352-135730547:+|nuORF	ENST00000370629.6_1_X:135730352-135730547:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	482.780439	963.546325	0.15318	7.395E-05	3.3256	0.0016055	3.4787	0.0016795	482.781946951538	80.481	1.4985	78.786	78.222	79.721	-1.6951	0.091606	-0.00037948	NaN	68.485	80	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	315550			38398	10936	31683	31706							0.06309374207626206
MLPLQVILV	9	Unmodified	_MLPLQVILV_					0	0	0			REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|247|2|anti-sense	REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|247|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	513.3279418945312	2	513.325014	1024.63547	-0.72982	-0.00037463	2.6165	0.0013431	1.8866	0.00096846	513.3270041871727	67.528	2.3815	64.867	64.644	67.025	-2.661					66	47	2	0	0	0	0.52083	1	5328	5328		40.573	5.3719	1	1844100	+		38399	28548	31684	31707	41731	41731					0.12414209167150148
MLPLRRGAR	9	Unmodified	_MLPLRRGAR_					0	0	0		nc|nan|Q8N9P6|C9orf163	nc|nan|Q8N9P6|C9orf163	nc|nan|Q8N9P6|C9orf163	MULTI-MSMS	OvCa99_classI_Rep5	1	535.3265991210938	2	535.324202	1068.63385	1.8534	0.00099216	1.2698	0.00067977	3.1232	0.0016719	535.3245798539286	129.21	0.70108	129.21	128.88	129.59	0					33	14	3	0	0	0	0.44294	1	14986	14986		47.916	3.7988	1	294650			38400	15419	31685	31708	41732	41732					0.10228012921766094
MLPLRRGAR	9	Unmodified	_MLPLRRGAR_					0	0	0		nc|nan|Q8N9P6|C9orf163	nc|nan|Q8N9P6|C9orf163	nc|nan|Q8N9P6|C9orf163	MULTI-MATCH	OvCa9_classI_Rep2	2		2	535.324202	1068.63385	0.20126	0.00010774	3.1091	0.0016644	3.3103	0.0017721	535.3261788034705	129.18	0.69278	128.95	128.67	129.37	-0.22696	-0.2682	0.0012314	NaN	47.916	21	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25239			38401	15419	31685	31708							0.10228012921766094
MLPLRRGAR	9	Unmodified	_MLPLRRGAR_					0	0	0		nc|nan|Q8N9P6|C9orf163	nc|nan|Q8N9P6|C9orf163	nc|nan|Q8N9P6|C9orf163	MULTI-MATCH	OvCa9_classI_Rep3	3		2	535.324202	1068.63385	1.2416	0.00066466	1.5837	0.00084779	2.8253	0.0015124	535.3253435648495	130.41	0.6922	129.29	129.18	129.87	-1.1121	0.073009	-0.00040181	NaN	47.916	19	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15782			38402	15419	31685	31708							0.10228012921766094
MLPLRRGAR	9	Unmodified	_MLPLRRGAR_					0	0	0		nc|nan|Q8N9P6|C9orf163	nc|nan|Q8N9P6|C9orf163	nc|nan|Q8N9P6|C9orf163	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	535.324202	1068.63385	2.134	0.0011424	1.8827	0.0010078	4.0167	0.0021502	535.3245728714727	130.9	0.43843	129.42	129.01	129.45	-1.4779	0.20111	-8.1705E-05	NaN	47.916	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40946			38403	15419	31685	31708							0.10228012921766094
MLPPFLFY	8	Unmodified	_MLPPFLFY_					0	0	0			REV__ENSG00000279012|ENST00000624187|OR51B2	REV__ENSG00000279012|ENST00000624187|OR51B2	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.2764892578125	2	514.269707	1026.52486	-0.99141	-0.00050985	2.3358	0.0012012	1.3444	0.00069136	514.2708649999122	93.19	0.59595	91.228	90.981	91.577	-1.9617					18	11	2	0	0	0	0.028476	1	5954	5954		33.493	13.011	1	23852	+		38404	23650	31686	31709	41733	41733					0.012659891789098765
MLPQAAAPRPG	11	Unmodified	_MLPQAAAPRPG_					0	0	0		ENST00000407558.8_1_16:3536054-3536108:+|nuORF	ENST00000407558.8_1_16:3536054-3536108:+|nuORF	ENST00000407558.8_1_16:3536054-3536108:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	554.7980346679688	2	554.800226	1107.5859	-1.2293	-0.00068202	-3.791	-0.0021033	-5.0203	-0.0027853	554.7978766641985	117.1	2.2786	116.07	115.75	118.02	-1.0324					77	36	3	0	0	0	0.43234	1	8766	8766		58.782	0.97068	1	174560			38405	11499	31687	31710	41734	41734					0.03640894211025625
MLPTCDVRLT	10	Unmodified	_MLPTCDVRLT_					0	0	0			REV__ENST00000525629.1_1_11:49184436-49197505:-|nuORF	REV__ENST00000525629.1_1_11:49184436-49197505:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.8181762695312	2	574.793752	1147.57295	1.8126	0.0010419	-3.6774	-0.0021137	-1.8648	-0.0010719	575.2929768741351	120.29	0.69337	120.29	120.05	120.74	0					23	16	2	0	0	0	0.026681	1	13847	13847		52.937	15.125	1	497510	+		38406	17147	31688	31711	41735	41735					0.005066950366426681
MLPVPLEKT	9	Unmodified	_MLPVPLEKT_					0	0	0			REV__nc|ENSG997|Q9N2J8|HERV-H-ENH3	REV__nc|ENSG997|Q9N2J8|HERV-H-ENH3	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.280517578125	2	514.296453	1026.57835	-0.14552	-7.4842E-05	3.0426	0.0015648	2.8971	0.00149	514.2975706299176	73.579	0.31714	73.579	73.4	73.717	0					9	7	2	0	0	0	0.027462	1	7229	7229		21.96	0	1	177560	+		38407	29236	31689	31712	41736	41736					0.06612741890762663
MLPWRECNI	9	Carbamidomethyl (C),Oxidation (M)	_M(Oxidation (M))LPWREC(Carbamidomethyl (C))NI_	MLPWREC(1)NI	M(1)LPWRECNI	MLPWREC(85)NI	M(85)LPWRECNI	0	1	1			REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9	REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9	MULTI-MSMS	OvCa99_classI_Rep5	1	617.7897338867188	2	617.789001	1233.56345	0.66897	0.00041328	-0.57031	-0.00035233	0.098661	6.0952E-05	617.7885055892336	141.82	2.1775	141.82	141.44	143.61	0					109	43	5	0	0	0	0.14998	1	16546	16546		84.916	8.7458	1	818980	+		38408	16315	31690	31713	41737	41737	184	390			-0.04399073248850982
MLQAEVLNM	9	Unmodified	_MLQAEVLNM_					0	0	0			REV__ENSG00000270379|ENST00000604834|HEATR9	REV__ENSG00000270379|ENST00000604834|HEATR9	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.8154907226562	2	524.76192	1047.50929	-0.39263	-0.00020604	3.3721	0.0017696	2.9795	0.0015635	524.7638729090155	122.09	0.64336	121.88	121.57	122.22	-0.21803					23	12	2	0	0	0	0.027441	1	11819	11819		40.778	1.5253	1	31260	+		38409	23604	31691	31714	41738	41738					-0.012566654004331212
MLQDAIIH	8	Unmodified	_MLQDAIIH_					0	0	0		nc|ENSG00000041515|Q9Y6X6-3|MYO16;nc|ENSG00000041515|Q9Y6X6-2|MYO16;nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16	nc|ENSG00000041515|Q9Y6X6-3|MYO16	nc|ENSG00000041515|Q9Y6X6-3|MYO16	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.25390625	2	470.74967	939.484787	0.55553	0.00026152	-1.1507	-0.00054168	-0.59515	-0.00028016	470.74859220722163	45.434	0.33865	45.434	45.202	45.54	0					10	7	2	0	0	0	0.028476	1	3144	3144		88.643	0	1	114650			38410	14870	31692	31715	41739	41739					0.012624425083458846
MLQDARREFL	10	Oxidation (M)	_M(Oxidation (M))LQDARREFL_		M(1)LQDARREFL		M(62)LQDARREFL	0	0	1		SYCE1|p.E132Dfs*9|1|0.39|ENSG00000171772|chr10:133557135-133557135|C/-|frameshift_variant	SYCE1|p.E132Dfs*9|1|0.39|ENSG00000171772|chr10:133557135-133557135|C/-|frameshift_variant	SYCE1|p.E132Dfs*9|1|0.39|ENSG00000171772|chr10:133557135-133557135|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	432.2216491699219	3	432.223928	1293.64996	-1.8932	-0.0008183	-1.7274	-0.0007466	-3.6206	-0.0015649	432.22317716770107	63.149	1.9449	60.405	59.899	61.844	-2.7444					99	36	4	0	0	0	0.44722	1	4775	4775		61.691	10.9	1	676300			38411	32936	31693	31716	41740	41740		726			0.014876295773319725
MLQDKRMEID	10	Unmodified	_MLQDKRMEID_					0	0	0		nc|ENSG00000090905|Q8NDV7-6|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A;nc|ENSG00000090905|Q8NDV7-2|TNRC6A;nc|ENSG00000090905|Q8NDV7-3|TNRC6A;ENST00000477487.5_1_16:24815406-24816553:+|nuORF	nc|ENSG00000090905|Q8NDV7-6|TNRC6A	nc|ENSG00000090905|Q8NDV7-6|TNRC6A	MULTI-SECPEP	OvCa9_classI_Rep3	3	638.8433837890625	2	639.812673	1277.61079	-1.0325	-0.00066058	1.0866	0.00069522	0.054141	3.464E-05	639.8131516854344	101.2	0.89243	99.595	99.395	100.29	-1.6053					25	16	2	0	0	0	0.026843	1	6980	6980		14.137	0	1	49796			38412	1851	31694	31717	41741	41741					-0.016908387685134585
MLQEILSAR	9	Unmodified	_MLQEILSAR_					0	0	0			REV__TCEANC|p.F210Gfs*24|1|0.05|ENSG00000176896|chrX:13663135-13663136|-/GGGGA|frameshift_variant	REV__TCEANC|p.F210Gfs*24|1|0.05|ENSG00000176896|chrX:13663135-13663136|-/GGGGA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	530.7957153320312	2	530.794609	1059.57467	0.6406	0.00034003	1.5577	0.00082683	2.1983	0.0011669	530.7953895085335	159.9	1.1866	159.9	159.52	160.71	0					39	23	2	0	0	0	0.52629	1	18757	18757		40.058	8.1033	1	117420	+		38413	21975	31695	31718	41742	41742					0.047260721169323006
MLQEPLLV	8	Unmodified	_MLQEPLLV_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.772705078125	2	471.770071	941.52559	0.70033	0.0003304	3.1416	0.0014821	3.842	0.0018125	471.77151465294384	65.014	2.1826	61.528	60.872	63.054	-3.4854					101	44	4	0	0	0	0.39692	1	4658	4658		88.643	3.2834	1	2027800			38414	6376	31696	31719	41743	41743					0.052487838279716925
MLQKKKWYHIK	11	Unmodified	_MLQKKKWYHIK_					0	0	0			REV__nc|ENSG00000293056|Q6NVV1|RPL13AP3	REV__nc|ENSG00000293056|Q6NVV1|RPL13AP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.7602844238281	3	501.626997	1501.85916	-0.82028	-0.00041148	0.14876	7.4623E-05	-0.67152	-0.00033685	501.6282044939144	65.527	0.11854	65.527	65.467	65.586	0					4	2	2	0	0	0	0.026497	1	6022	6022		3.2113	0	1	126860	+		38415	29221	31697	31720	41744	41744					0.12830497601294155
MLQLVAAQGR	10	Unmodified	_MLQLVAAQGR_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	OvCa9_classI_Rep2	2	543.8156127929688	2	543.808051	1085.60155	-1.1846	-0.00064417	2.2729	0.001236	1.0883	0.00059184	543.8087265005075	121.27	0.93931	121.07	120.7	121.64	-0.19718					41	18	3	0	0	0	0.52321	1	11707	11707		51.335	5.3632	1	84533			38416	4962	31698	31721	41745	41745					0.06217180728094718
MLQRLKEQQFV	11	Unmodified	_MLQRLKEQQFV_					0	0	0		ENSG00000214717|ENST00000652001|ZBED1	ENSG00000214717|ENST00000652001|ZBED1	ENSG00000214717|ENST00000652001|ZBED1	MULTI-MSMS	OvCa9_classI_Rep3	3	473.9282531738281	3	473.930745	1418.7704	-6.0595	-0.0028718	1.8266	0.00086566	-4.2329	-0.0020061	473.93111268931267	162.59	1.1094	161.2	160.75	161.85	-1.3925					55	23	4	0	0	0	0.72516	1	14159	14159		13.508	0.55046	1	97868			38417	9180	31699	31722	41746	41746					0.07777037570940593
MLQSTTTPL	9	Oxidation (M)	_M(Oxidation (M))LQSTTTPL_		M(1)LQSTTTPL		M(64)LQSTTTPL	0	0	1			REV__ENSG00000188112|ENST00000341865|C6orf132	REV__ENSG00000188112|ENST00000341865|C6orf132	MULTI-MSMS	OvCa99_classI_Rep5	1	504.2578125	2	504.257525	1006.5005	-0.4297	-0.00021668	-1.5316	-0.00077231	-1.9613	-0.00098899	504.2563813528699	55.831	0.9421	55.831	55.48	56.422	0					35	22	4	0	0	0	0.28934	1	4598	4598		64.207	9.4426	1	1049200	+		38418	22691	31700	31723	41747	41747		525			-0.0024931576525659693
MLQSVREGIIA	11	Unmodified	_MLQSVREGIIA_					0	0	0		tr|A0A553SGS9|A0A553SGS9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=dcuSPE=4SV=1	tr|A0A553SGS9|A0A553SGS9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=dcuSPE=4SV=1	tr|A0A553SGS9|A0A553SGS9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=dcuSPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	608.8359375	2	608.839548	1215.66454	-3.9036	-0.0023766	-0.38806	-0.00023627	-4.2916	-0.0026129	608.8391511731406	151.54	1.2369	151.31	150.94	152.18	-0.22697					74	24	4	0	0	0	0.68757	1	15424	15424		33.922	2.3918	1	158260			38419	33192	31701	31724	41748	41748					0.06533701725493302
MLRFLLNR	8	Unmodified	_MLRFLLNR_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MSMS	OvCa9_classI_Rep4_	4	531.816650390625	2	531.815679	1061.6168	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.64	1	135.09	134.59	135.59	-1.5437								0	0	0	0.30129	1	13261	13261		35.201	2.3883	1		+		38420	17630	31702	31725	41749	41749					0.08846092315957321
MLRGAVIIFTG	11	Unmodified	_MLRGAVIIFTG_					0	0	0		ENSG00000213699|ENST00000344420|SLC35F6	ENSG00000213699|ENST00000344420|SLC35F6	ENSG00000213699|ENST00000344420|SLC35F6	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3432006835938	2	589.341726	1176.6689	-2.1868	-0.0012888	4.2276	0.0024915	2.0407	0.0012027	589.3441619466173	148.26	4.549	146.82	145.53	150.08	-1.435					304	95	6	0	0	0	0.60323	1	14725	14725		44.377	11.565	1	385010			38421	9141	31703	31726	41750	41750					0.08763210939059718
MLRIAEPD	8	Unmodified	_MLRIAEPD_					0	0	0		ENSG00000150938|ENST00000280527|CRIM1	ENSG00000150938|ENST00000280527|CRIM1	ENSG00000150938|ENST00000280527|CRIM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.78009033203125	2	472.747127	943.479702	2.1244	0.0010043	0.78837	0.0003727	2.9127	0.001377	472.7474665893446	134	0.42995	134	133.72	134.15	0					14	8	2	0	0	0	0.028476	1	15599	15599		31.955	0	1	40163			38422	5523	31704	31727	41751	41751					0.00570138645730367
MLRIPRTA	8	Unmodified	_MLRIPRTA_					0	0	0		JARID2|p.F790Lfs*33|1|0.15|ENSG00000008083|chr6:15501331-15501331|C/-|frameshift_variant;nc|ENSG00000008083|Q92833-2|JARID2;nc|ENSG00000008083|Q92833-3|JARID2;ENSG00000008083|ENST00000341776|JARID2;JARID2|p.Q691E|1|0.07|ENSG00000008083|chr6:15501032-15501032|C/G|missense_variant	JARID2|p.F790Lfs*33|1|0.15|ENSG00000008083|chr6:15501331-15501331|C/-|frameshift_variant	JARID2|p.F790Lfs*33|1|0.15|ENSG00000008083|chr6:15501331-15501331|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	479.2881164550781	2	479.286754	956.558955	1.7631	0.00084502	2.1442	0.0010277	3.9073	0.0018727	479.2876787398958	28.181	0.755	25.471	25.294	26.049	-2.7097					33	15	3	0	0	0	0.74595	1	584	584		14.664	0	1	110940			38423	911	31705	31728	41752	41752					0.0789383039053746
MLRMLLSP	8	Unmodified	_MLRMLLSP_					0	0	0		ENST00000467189.1_1_3:72136574-72136808:+|nuORF;ENSG00000185298|ENST00000329214|CCDC137	ENST00000467189.1_1_3:72136574-72136808:+|nuORF	ENST00000467189.1_1_3:72136574-72136808:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.26226806640625	2	480.772091	959.529629	0.89096	0.00042835	-0.93897	-0.00045143	-0.048008	-2.3081E-05	480.77153361765943	68.084	1.1269	64.594	64.235	65.362	-3.4902					48	22	3	0	0	0	0.028476	1	5081	5081		57.811	22.193	1	300460			38424	8244	31706	31729	41753	41753					0.04824550050034304
MLRMLLSP	8	Unmodified	_MLRMLLSP_					0	0	0		ENST00000467189.1_1_3:72136574-72136808:+|nuORF;ENSG00000185298|ENST00000329214|CCDC137	ENST00000467189.1_1_3:72136574-72136808:+|nuORF	ENST00000467189.1_1_3:72136574-72136808:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	480.772091	959.529629	-0.80644	-0.00038771	0.78318	0.00037653	-0.023259	-1.1182E-05	480.77232001900103	67.347	1.3825	64.686	64.199	65.581	-2.661	0.04644	0.00082008	NaN	57.811	53	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113080			38425	8244	31706	31729							0.04824550050034304
MLRMQEDME	9	Oxidation (M)	_MLRM(Oxidation (M))QEDME_		MLRM(1)QEDME		M(-43)LRM(40)QEDM(-40)E	0	0	1			REV__ENST00000338274.4_1_2:26032960-26033152:-|nuORF	REV__ENST00000338274.4_1_2:26032960-26033152:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	599.7513427734375	2	599.748684	1197.48281	1.8327	0.0010992	2.4815	0.0014883	4.3142	0.0025875	599.74909488487	138.23	1.0483	138.23	137.64	138.69	0					33	22	2	0	0	0	0.22621	1	16134	16134		71.877	17.101	3	201590	+		38426	24608	31707	31730	41754	41754		561			-0.10802722354105754
MLRRANKKIER	11	Unmodified	_MLRRANKKIER_					0	0	0			REV__ENSG00000188064|ENST00000339464|WNT7B	REV__ENSG00000188064|ENST00000339464|WNT7B	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.2827453613281	3	472.285633	1413.83507	-4.4137	-0.0020845	0.71465	0.00033752	-3.699	-0.001747	472.28623594983816	156.93	2.47	155.39	154.2	156.67	-1.545					140	72	3	0	0	0	0.72472	1	15520	15520		19.263	3.9296	1	49755	+		38427	22688	31708	31731	41755	41755					0.14470657167589707
MLRRINNV	8	Unmodified	_MLRRINNV_					0	0	0			REV__ENSG00000131747|ENST00000423485|TOP2A	REV__ENSG00000131747|ENST00000423485|TOP2A	MULTI-MSMS	OvCa9_classI_Rep3	3	508.2913818359375	2	508.295111	1014.57567	-0.9868	-0.00050158	-3.912	-0.0019884	-4.8988	-0.00249	508.29294653313184	116.44	1.3851	115.39	115.05	116.43	-1.0414					64	27	4	0	0	0	0.66704	1	8700	8700		50.025	4.0726	1	264190	+		38428	19031	31709	31732	41756	41756					0.06896331276470846
MLRRNLFER	9	Unmodified	_MLRRNLFER_					0	0	0		tr|A0A553SHS1|A0A553SHS1_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_13495PE=4SV=1	tr|A0A553SHS1|A0A553SHS1_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_13495PE=4SV=1	tr|A0A553SHS1|A0A553SHS1_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_13495PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	412.2317199707031	3	412.232758	1233.67644	1.934	0.00079726	-4.4887	-0.0018504	-2.5547	-0.0010531	412.2308161483838	65.879	3.828	62.933	62.452	66.28	-2.9459					181	75	4	0	0	0	0.53483	1	2669	2669		39.253	0	1	1016400			38429	33302	31710	31733	41757	41757					0.06895363259332044
MLRSYTEE	8	Unmodified	_MLRSYTEE_					0	0	0			REV__ENSG00000198844|ENST00000361926|ARHGEF15	REV__ENSG00000198844|ENST00000361926|ARHGEF15	MSMS	OvCa99_classI_Rep5	1	514.7410888671875	2	514.739499	1027.46445	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.638	1	86.638	86.138	87.138	0								0	0	0	0.30129	1	9144	9144		53.351	2.016	1		+		38430	23078	31711	31734	41758	41758					-0.04818772942121541
MLSFFLLT	8	Unmodified	_MLSFFLLT_					0	0	0			REV__tr|A0A7D6ZMI4|A0A7D6ZMI4_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12050PE=3SV=1	REV__tr|A0A7D6ZMI4|A0A7D6ZMI4_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12050PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.289306640625	2	486.267164	970.519776	-1.1321	-0.00055048	-0.89901	-0.00043716	-2.0311	-0.00098764	486.2670841136581	95.435	1.0916	93.539	93.063	94.154	-1.8956					36	21	3	0	0	0	0.028476	1	6292	6292		42.474	5.3154	1	40891	+		38431	32107	31712	31735	41759	41759					0.03333685316295032
MLSFFLLT	8	Unmodified	_MLSFFLLT_					0	0	0			REV__tr|A0A7D6ZMI4|A0A7D6ZMI4_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12050PE=3SV=1	REV__tr|A0A7D6ZMI4|A0A7D6ZMI4_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12050PE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	486.267164	970.519776	2.1011	0.0010217	-7.1729	-0.003488	-5.0719	-0.0024663	486.26355312523145	93.862	0.75777	93.862	93.549	94.306	0	0.19761	-0.0012727	NaN	42.474	40	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3321100	+		38432	32107	31712	31735							0.03333685316295032
MLSFFLLT	8	Unmodified	_MLSFFLLT_					0	0	0			REV__tr|A0A7D6ZMI4|A0A7D6ZMI4_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12050PE=3SV=1	REV__tr|A0A7D6ZMI4|A0A7D6ZMI4_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12050PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	486.267164	970.519776	-0.40533	-0.0001971	-1.5008	-0.00072977	-1.9061	-0.00092687	486.2667667856642	96.017	0.81255	93.592	93.254	94.067	-2.4256	-0.072641	0.0042436	NaN	42.474	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38202	+		38433	32107	31712	31735							0.03333685316295032
MLSFGREESL	10	Unmodified	_MLSFGREESL_					0	0	0			REV__nc|ENSG00000158793|Q86X76-4|NIT1	REV__nc|ENSG00000158793|Q86X76-4|NIT1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	583.8135375976562	2	584.786981	1167.55941	-1.3546	-0.00079213	-3.367	-0.001969	-4.7215	-0.0027611	584.786182485081	99.588	1.0728	97.262	96.899	97.971	-2.3253					39	20	3	0	0	0	0.027028	1	8885	8885		8.2351	0	1	45179	+		38434	28953	31713	31736	41760	41760					-0.017668394709289714
MLSGILMVCIS	11	Unmodified	_MLSGILMVCIS_					0	0	0			REV__nc|ENSG00000173826|Q9H252-2|KCNH6;REV__nc|ENSG00000055118|Q12809-5|KCNH2;REV__KCNH7|p.Q1048Pfs*5|1|0.11|ENSG00000184611|chr2:162373653-162373654|-/T|frameshift_variant	REV__KCNH7|p.Q1048Pfs*5|1|0.11|ENSG00000184611|chr2:162373653-162373654|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	584.3040161132812	2	583.802731	1165.59091	0.97841	0.0005712	-0.54583	-0.00031866	0.43257	0.00025254	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.71498	1	1384	1384		24.519	0.99649	1	155970	+		38435	21803;16707;22442	31714	31737	41761	41761					0.01473693967136569
MLSHPAGLLS	10	Unmodified	_MLSHPAGLLS_					0	0	0		ENST00000254940.9_1_16:69373547-69373604:+|nuORF	ENST00000254940.9_1_16:69373547-69373604:+|nuORF	ENST00000254940.9_1_16:69373547-69373604:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	513.2760009765625	2	513.276052	1024.53755	1.875	0.0009624	-2.3563	-0.0012094	-0.48124	-0.00024701	513.2746129737625	78.108	0.57018	78.108	77.844	78.415	0					31	13	3	0	0	0	0.41408	1	7909	7909		66.429	22.312	1	1413500			38436	9816	31715	31738	41762	41762					0.02626400571148224
MLSIHEFVD	9	Unmodified	_MLSIHEFVD_					0	0	0			REV__ENSG00000186526|ENST00000612078|CYP4F8	REV__ENSG00000186526|ENST00000612078|CYP4F8	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.8148193359375	2	545.765517	1089.51648	2.0291	0.0011074	-3.1609	-0.0017251	-1.1318	-0.00061769	545.763565749806	85.026	0.70339	85.026	84.758	85.462	0					49	16	4	0	0	0	0.027448	1	8917	8917		44.117	0	1	2580500	+		38437	22597	31716	31739	41763	41763					-0.02469609528361616
MLSLFSIIK	9	Unmodified	_MLSLFSIIK_					0	0	0			REV__tr|A0A553SMW5|A0A553SMW5_NIACIPhosphatidylglycerollysyltransferaseOS=NialliacirculansOX=1397GN=mprFPE=3SV=1	REV__tr|A0A553SMW5|A0A553SMW5_NIACIPhosphatidylglycerollysyltransferaseOS=NialliacirculansOX=1397GN=mprFPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	526.3142700195312	2	526.314646	1050.61474	0.91829	0.00048331	-0.94242	-0.00049601	-0.024135	-1.2703E-05	526.3139752685214	125.3	2.0349	124.25	123.69	125.72	-1.0519					99	38	3	0	0	0	0.33652	1	9721	9721		58.782	0	1	239120	+		38438	30375	31717	31740	41764	41764					0.09145618787465537
MLSLGAVLGAP	11	Unmodified	_MLSLGAVLGAP_					0	0	0			REV__ENSG00000096092|ENST00000211314|TMEM14A	REV__ENSG00000096092|ENST00000211314|TMEM14A	MSMS	OvCa99_classI_Rep5	1	514.7964477539062	2	514.794078	1027.5736	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.856	1	67.856	67.356	68.356	0								0	0	0	0.091379	1	6374	6374		68.787	2.3575	1		+		38439	17303	31718	31741	41765	41765					0.06091857747992435
MLSNTRRLD	9	Unmodified	_MLSNTRRLD_					0	0	0			REV__nc|ENSG00000198216|Q15878-2|CACNA1E	REV__nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.8153076171875	2	553.292765	1104.57098	-0.77709	-0.00042996	0.59274	0.00032796	-0.18435	-0.000102	553.2929700963232	59.527	0.46178	59.527	59.377	59.839	0					18	11	2	0	0	0	0.027462	1	5177	5177		27.882	0	1	741170	+		38440	23002	31719	31742	41766	41766					0.022874023430631496
MLSPHQIFAF	10	Unmodified	_MLSPHQIFAF_					0	0	0			REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-SECPEP	OvCa99_classI_Rep5	1	595.3239135742188	2	595.804977	1189.5954	1.7217	0.0010258	2.9899	0.0017814	4.7116	0.0028072	595.8066206490399	118.84	0.70851	118.84	118.58	119.29	0					39	14	4	0	0	0	0.026782	1	13662	13662		37.812	22.17	1	505070	+		38441	20958	31720	31743	41767	41767					0.008186624965674127
MLSPRVLTT	9	Unmodified	_MLSPRVLTT_					0	0	0			REV__HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|26|1|sense	REV__HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|26|1|sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	509.308349609375	2	509.291702	1016.56885	0.03938	2.0056E-05	-3.5708	-0.0018186	-3.5314	-0.0017985	509.2897784617977	110.31	0.63092	109.17	108.87	109.51	-1.1444					14	11	2	0	0	0	0.027432	1	7976	7976		49.536	7.1399	1	11445	+		38442	28229	31721	31744	41768	41768					0.06122973605238258
MLSQGKKPV	9	Unmodified	_MLSQGKKPV_					0	0	0			REV__ENST00000330688.8_1_3:25470089-25470179:+|nuORF	REV__ENST00000330688.8_1_3:25470089-25470179:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	494.2847900390625	2	494.28642	986.558287	-0.096989	-4.7941E-05	-0.33924	-0.00016768	-0.43623	-0.00021562	494.28606431515385	83.612	2.4718	82.013	81.369	83.841	-1.5988					133	49	4	0	0	0	0.19758	1	7162	7162		76.774	7.9873	1	1379300	+		38443	24529	31722	31745	41769	41769					0.06446990950826148
MLSQGKKPV	9	Unmodified	_MLSQGKKPV_					0	0	0			REV__ENST00000330688.8_1_3:25470089-25470179:+|nuORF	REV__ENST00000330688.8_1_3:25470089-25470179:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	494.2876281738281	2	494.28642	986.558287	-1.2403	-0.00061306	0.87686	0.00043342	-0.36342	-0.00017964	494.28670132933	84.122	2.6507	81.861	81.346	83.997	-2.261					153	54	4	0	0	0	0.11471	2	4865	4830;4865		93.195	13.744	1	2419900	+		38444	24529	31722	31745	41770;41771	41771					0.06446990950826148
MLSTYQAF	8	Unmodified	_MLSTYQAF_					0	0	0		tr|A0A7D6VYA0|A0A7D6VYA0_9CLOTPermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00455PE=3SV=1	tr|A0A7D6VYA0|A0A7D6VYA0_9CLOTPermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00455PE=3SV=1	tr|A0A7D6VYA0|A0A7D6VYA0_9CLOTPermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00455PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.23797607421875	2	480.728403	959.442254	2.2793	0.0010957	-3.6557	-0.0017574	-1.3765	-0.00066171	480.72649270009134	84.883	1.7795	84.883	84.051	85.83	0					78	42	3	0	0	0	0.028476	1	8814	8814		31.955	4.0726	1	449900			38445	35325	31723	31746	41772	41772					-0.03908952619883621
MLSVPFGAM	9	Unmodified	_MLSVPFGAM_					0	0	0		tr|A0A553SHQ5|A0A553SHQ5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_13445PE=4SV=1	tr|A0A553SHQ5|A0A553SHQ5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_13445PE=4SV=1	tr|A0A553SHQ5|A0A553SHQ5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_13445PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.7994384765625	2	476.735174	951.455795	0.51936	0.0002476	-3.4591	-0.0016491	-2.9398	-0.0014015	476.7332385918992	56.606	1.0667	53.311	53.07	54.137	-3.2944					23	20	2	0	0	0	0.027462	1	3725	3725		7.1934	0	1	31599			38446	33297	31724	31747	41773	41773					-0.021874181122939262
MLTANKMKLTE	11	Unmodified	_MLTANKMKLTE_					0	0	0		ENSG00000156469|ENST00000287025|MTERF3;nc|ENSG00000156469|Q96E29-3|MTERF3;nc|ENSG00000156469|Q96E29-2|MTERF3	ENSG00000156469|ENST00000287025|MTERF3	ENSG00000156469|ENST00000287025|MTERF3	MULTI-MSMS	OvCa9_classI_Rep2	2	640.341064453125	2	640.341066	1278.66758	-2.0951	-0.0013416	2.2312	0.0014287	0.13612	8.716E-05	640.3424545682959	51.93	1.532	49.117	48.7	50.232	-2.8129					86	30	4	0	0	0	0.68709	1	3449	3449		18.262	0	1	488120			38447	5840	31725	31748	41774	41774					0.039392087879832616
MLTDIRNRQN	10	Unmodified	_MLTDIRNRQN_					0	0	0			REV__ENSG00000013503|ENST00000228347|POLR3B	REV__ENSG00000013503|ENST00000228347|POLR3B	MULTI-SECPEP	OvCa9_classI_Rep3	3	630.372802734375	2	630.827503	1259.64045	-0.55394	-0.00034944	3.5715	0.002253	3.0175	0.0019035	630.829673136948	87.044	0.81336	84.868	84.531	85.345	-2.1768					32	15	3	0	0	0	0.026942	1	5238	5238		20.947	0	1	47358	+		38448	16507	31726	31749	41775	41775					0.02101861291816931
MLTDISIELNK	11	Unmodified	_MLTDISIELNK_					0	0	0			REV__nc|ENSG00000196586|Q9UM54-5|MYO6	REV__nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-MSMS	OvCa9_classI_Rep4_	4	638.8435668945312	2	638.844496	1275.67444	0.20241	0.00012931	-1.8114	-0.0011572	-1.609	-0.0010279	638.8432805589141	102.59	1.7814	100.39	99.884	101.67	-2.1994					95	33	5	0	0	0	0.4646	2	9228	9228;9262		56.434	3.3448	1	760420	+		38449	22846	31727	31750	41776;41777	41776					0.047628449402054684
MLTGERQP	8	Unmodified	_MLTGERQP_					0	0	0			REV__ENST00000460547.6_1_6:43480707-43481025:-|nuORF	REV__ENST00000460547.6_1_6:43480707-43481025:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.2381286621094	2	466.236927	930.459301	-1.071	-0.00049935	1.1042	0.0005148	0.033139	1.5451E-05	466.23740207591294	43.973	3.6033	40.966	40.22	43.824	-3.0074					174	69	4	0	0	0	0.60331	1	2177	2177		63.306	7.8021	1	2152800	+		38450	26085	31728	31751	41778	41778					-0.008710320140721706
MLTIRCSGR	9	Carbamidomethyl (C)	_MLTIRC(Carbamidomethyl (C))SGR_	MLTIRC(1)SGR		MLTIRC(74)SGR		0	1	0			REV__ENST00000300289.9_1_15:44059005-44060742:+|nuORF	REV__ENST00000300289.9_1_15:44059005-44060742:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	547.326904296875	2	547.283886	1092.55322	0.12558	6.8729E-05	3.5029	0.0019171	3.6285	0.0019858	547.2853712512288	93.216	1.5394	92.048	91.655	93.195	-1.168					70	29	4	0	0	0	0.027295	1	8371	8371		74.255	8.4519	1	132650	+		38451	24232	31729	31752	41779	41779	287				0.010643638165447555
MLTIVDWAIT	10	Unmodified	_MLTIVDWAIT_					0	0	0			REV__ENSG00000158169|ENST00000289081|FANCC	REV__ENSG00000158169|ENST00000289081|FANCC	MULTI-MSMS	OvCa99_classI_Rep5	1	581.8096313476562	2	581.812467	1161.61038	1.9131	0.0011131	-4.4851	-0.0026095	-2.5719	-0.0014964	581.8101422660108	108.24	0.68509	108.24	107.99	108.67	0					24	15	2	0	0	0	0.33376	1	12240	12240		76.774	0	1	793380	+		38452	20555	31730	31753	41780	41780					0.036041095738937656
MLTLPEDLAR	10	Oxidation (M)	_M(Oxidation (M))LTLPEDLAR_		M(1)LTLPEDLAR		M(62)LTLPEDLAR	0	0	1		ENSG00000172840|ENST00000311765|PDP2	ENSG00000172840|ENST00000311765|PDP2	ENSG00000172840|ENST00000311765|PDP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.2822875976562	2	587.810456	1173.60636	2.3096	0.0013576	-3.9315	-0.002311	-1.622	-0.00095341	587.808781091364	93.985	0.25344	93.985	93.841	94.094	0					9	5	2	0	0	0	0.026679	1	10200	10200		62.107	20.681	1	255300			38453	7323	31731	31754	41781	41781		221			0.026500200802047402
MLTLRSLLF	9	Unmodified	_MLTLRSLLF_					0	0	0		ENSG00000172031|ENST00000370383|EPHX4	ENSG00000172031|ENST00000370383|EPHX4	ENSG00000172031|ENST00000370383|EPHX4	MULTI-MSMS	OvCa9_classI_Rep3	3	547.3284301757812	2	547.325545	1092.63654	-1.0329	-0.00056535	3.974	0.0021751	2.9411	0.0016097	547.3277122576889	94.735	1.8458	92.839	92.358	94.204	-1.8956					106	36	5	0	0	0	0.42676	1	6151	6151		49.442	7.0454	1	1623200			38454	7261	31732	31755	41782	41782					0.09392423536064598
MLTQRVEI	8	Unmodified	_MLTQRVEI_					0	0	0		ENSG00000187091|ENST00000334661|PLCD1;nc|ENSG00000187091|P51178-2|PLCD1;ENST00000461445.5_1_3:38051483-38071030:-|nuORF	ENSG00000187091|ENST00000334661|PLCD1	ENSG00000187091|ENST00000334661|PLCD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.2961730957031	2	495.276052	988.537551	1.6964	0.0008402	-2.7917	-0.0013827	-1.0953	-0.00054248	495.27459173507276	87.278	0.49208	87.278	87.054	87.546	0					18	11	2	0	0	0	0.028476	1	9258	9258		30.504	1.3541	1	665890			38455	8385	31733	31756	41783	41783					0.042824005711622704
MLTWPSLLV	9	Unmodified	_MLTWPSLLV_					0	0	0		nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19	nc|ENSG00000172046|O94966-4|USP19	nc|ENSG00000172046|O94966-4|USP19	MULTI-MSMS	OvCa99_classI_Rep5	1	530.2977294921875	2	530.298996	1058.58344	2.7738	0.0014709	-2.6535	-0.0014071	0.1203	6.3797E-05	530.296202249073	102.44	1.0597	102.44	102.04	103.1	0					83	24	5	0	0	0	0.19716	1	11432	11432		76.847	4.9692	1	1872000			38456	15179	31734	31757	41784	41784					0.05649045753398241
MLVAGLLLW	9	Unmodified	_MLVAGLLLW_					0	0	0		SEMA3F-RBM6|1|fusion;SEMA3F-RBM6|4|fusion;SEMA3F-RBM6|3|fusion;SEMA3F-RBM6|2|fusion;nc|ENSG00000001617|Q13275-2|SEMA3F;ENSG00000001617|ENST00000002829|SEMA3F	SEMA3F-RBM6|1|fusion;nc|ENSG00000001617|Q13275-2|SEMA3F	SEMA3F-RBM6|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	508.3024597167969	2	508.304081	1014.59361	-0.7519	-0.0003822	-3.8865	-0.0019755	-4.6384	-0.0023577	508.3020452283535	89.004	2.3018	86.873	86.112	88.414	-2.1309					130	45	4	0	0	0	0.32242	1	5460	5460		60.404	3.6826	1	1985700			38457	32807;805	31735	31758	41785	41785					0.08689653478620585
MLVATLYILS	10	Unmodified	_MLVATLYILS_					0	0	0			REV__OR14K1|p.L270Sfs*15|1|0.04|ENSG00000153230|chr1:247739420-247739421|-/TT|frameshift_variant	REV__OR14K1|p.L270Sfs*15|1|0.04|ENSG00000153230|chr1:247739420-247739421|-/TT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	562.3088989257812	2	562.325211	1122.63587	1.6438	0.00092433	4.4788	0.0025185	6.1226	0.0034429	562.3278083147782	112.3	0.29543	111.22	111.11	111.4	-1.0853					7	5	2	0	0	0	0.027716	1	8195	8195		84.916	18.486	1	7431.6	+		38458	20330	31736	31759	41786	41786					0.07945584096341918
MLVCIYFII	9	Unmodified	_MLVCIYFII_					0	0	0		ENSG00000081248|ENST00000362061|CACNA1S;CACNA1S|p.L937Sfs*27|1|0.58|ENSG00000081248|chr1:201065882-201065882|G/-|frameshift_variant;nc|ENSG00000102001|O60840-5|CACNA1F;nc|ENSG00000102001|O60840-7|CACNA1F;nc|ENSG00000102001|O60840-4|CACNA1F;nc|ENSG00000102001|O60840-6|CACNA1F;ENSG00000102001|ENST00000323022|CACNA1F;nc|ENSG00000102001|O60840|CACNA1F;ERC1-CACNA1C|23|fusion;ERC1-CACNA1C|37|fusion;ERC1-CACNA1C|9|fusion;ERC1-CACNA1C|18|fusion;ERC1-CACNA1C|11|fusion;ERC1-CACNA1C|17|fusion;ERC1-CACNA1C|14|fusion;ERC1-CACNA1C|35|fusion;ERC1-CACNA1C|33|fusion;ERC1-CACNA1C|39|fusion;ERC1-CACNA1C|25|fusion;ERC1-CACNA1C|5|fusion;ERC1-CACNA1C|43|fusion;ERC1-CACNA1C|38|fusion;ERC1-CACNA1C|44|fusion;ERC1-CACNA1C|45|fusion;ERC1-CACNA1C|31|fusion;ERC1-CACNA1C|32|fusion;ERC1-CACNA1C|40|fusion;ERC1-CACNA1C|30|fusion;ERC1-CACNA1C|34|fusion;ERC1-CACNA1C|36|fusion;ERC1-CACNA1C|41|fusion;ERC1-CACNA1C|8|fusion;ERC1-CACNA1C|22|fusion;ERC1-CACNA1C|19|fusion;ERC1-CACNA1C|46|fusion;ERC1-CACNA1C|6|fusion;ERC1-CACNA1C|3|fusion;ERC1-CACNA1C|1|fusion;ERC1-CACNA1C|4|fusion;ERC1-CACNA1C|42|fusion;ERC1-CACNA1C|13|fusion;ERC1-CACNA1C|29|fusion;ERC1-CACNA1C|12|fusion;ERC1-CACNA1C|2|fusion;ERC1-CACNA1C|10|fusion;ERC1-CACNA1C|16|fusion;ERC1-CACNA1C|20|fusion;ERC1-CACNA1C|26|fusion;ERC1-CACNA1C|21|fusion;ERC1-CACNA1C|15|fusion;ERC1-CACNA1C|24|fusion;ERC1-CACNA1C|27|fusion;ERC1-CACNA1C|7|fusion;ERC1-CACNA1C|28|fusion;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;CACNA1C|p.V1586Wfs*9|1|0.1|ENSG00000151067|chr12:2666770-2666770|C/-|frameshift_variant;CACNA1C|p.S1498Afs*17|1|0.18|ENSG00000151067|chr12:2664940-2664940|A/-|frameshift_variant;CACNA1C|p.I1373Sfs*65|1|0.06|ENSG00000151067|chr12:2651667-2651668|-/G|frameshift_variant;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C	ENSG00000081248|ENST00000362061|CACNA1S;ERC1-CACNA1C|23|fusion;nc|ENSG00000151067|Q13936-26|CACNA1C	ERC1-CACNA1C|23|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	557.8206787109375	2	557.805599	1113.59665	0.40747	0.00022729	3.7737	0.002105	4.1812	0.0023323	558.3087660110177	97.752	1.0786	96.794	96.464	97.542	-0.95857					34	21	2	0	0	0	0.027462	1	8916	8916		39.021	0	1	54362			38459	14314;15092;1658	31737	31760	41787	41787					0.04439160541119236
MLVDQSHLT	9	Unmodified	_MLVDQSHLT_					0	0	0			REV__ENST00000525846.6_1_16:18437791-18443539:-|nuORF	REV__ENST00000525846.6_1_16:18437791-18443539:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.3069458007812	2	522.263142	1042.51173	-0.89431	-0.00046707	-3.5001	-0.001828	-4.3944	-0.002295	522.2614247656642	91.098	0.75636	89.074	88.727	89.483	-2.0241					27	14	3	0	0	0	0.027462	1	5654	5654		34.173	13.691	1	23463	+		38460	27122	31738	31761	41788	41788					-0.007824936711358532
MLVDQSHLT	9	Unmodified	_MLVDQSHLT_					0	0	0			REV__ENST00000525846.6_1_16:18437791-18443539:-|nuORF	REV__ENST00000525846.6_1_16:18437791-18443539:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	522.263142	1042.51173	-0.93747	-0.00048961	-1.296	-0.00067687	-2.2335	-0.0011665	522.262381750758	91.695	0.85909	89.153	88.912	89.771	-2.5425	0.039624	0.0010992	NaN	42.396	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30148	+		38461	27122	31738	31761							-0.007824936711358532
MLVDVNVHPSK	11	Unmodified	_MLVDVNVHPSK_					0	0	0		tr|A0A553SNJ0|A0A553SNJ0_NIACIDNAmismatchrepairproteinMutLOS=NialliacirculansOX=1397GN=mutLPE=3SV=1	tr|A0A553SNJ0|A0A553SNJ0_NIACIDNAmismatchrepairproteinMutLOS=NialliacirculansOX=1397GN=mutLPE=3SV=1	tr|A0A553SNJ0|A0A553SNJ0_NIACIDNAmismatchrepairproteinMutLOS=NialliacirculansOX=1397GN=mutLPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	619.8689575195312	2	619.831723	1237.64889	-3.8248	-0.0023708	-4.1322	-0.0025613	-7.957	-0.004932	620.3306296023053	151.62	0.75806	150.67	150.55	151.31	-0.95645					17	14	2	0	0	0	0.025487	1	12929	12929		46.457	17.287	1	15908			38462	33928	31739	31762	41789	41789					0.03957415208424209
MLVEAIHLCP	10	Carbamidomethyl (C)	_MLVEAIHLC(Carbamidomethyl (C))P_	MLVEAIHLC(1)P		MLVEAIHLC(61)P		0	1	0		nc|ENSG00000290684|A6NFC9|OR2W5P	nc|ENSG00000290684|A6NFC9|OR2W5P	nc|ENSG00000290684|A6NFC9|OR2W5P	MULTI-MSMS	OvCa99_classI_Rep5	1	591.8050537109375	2	591.804119	1181.59369	0.98536	0.00058314	2.0061	0.0011872	2.9914	0.0017703	591.8051069859579	132.42	0.80553	132.42	132.04	132.84	0					38	16	3	0	0	0	0.45225	1	15408	15408		60.972	6.2073	1	442740			38463	15394	31740	31763	41790	41790	178				0.01015285416315237
MLVEAIMLLT	10	Unmodified	_MLVEAIMLLT_					0	0	0		ENST00000534255.1_1_8:145193835-145194452:+|nuORF;ENSG00000235173|ENST00000347708|HGH1	ENST00000534255.1_1_8:145193835-145194452:+|nuORF	ENST00000534255.1_1_8:145193835-145194452:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.3016967773438	2	567.319071	1132.62359	-0.23109	-0.0001311	-2.8689	-0.0016276	-3.1	-0.0017587	567.8195134493935	58.953	0.23122	58.953	58.852	59.083	0					8	5	2	0	0	0	0.026665	1	5044	5044		51.335	0	1	758900			38464	9306	31741	31764	41791	41791					0.06258224361658904
MLVEKTDR	8	Unmodified	_MLVEKTDR_					0	0	0			REV__ENST00000430838.2_1_7:64291963-64292014:+|nuORF	REV__ENST00000430838.2_1_7:64291963-64292014:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	496.26654052734375	2	496.265684	990.516816	1.8637	0.0009249	-2.3177	-0.0011502	-0.454	-0.0002253	496.2643848501877	59.438	2.028	56.339	55.347	57.375	-3.0993					83	55	2	0	0	0	0.73938	1	1951	1951		31.955	4.0726	1	32593	+		38465	25715	31742	31765	41792	41792					0.02117810191487024
MLVGDVCYAVD	11	Carbamidomethyl (C),Oxidation (M)	_M(Oxidation (M))LVGDVC(Carbamidomethyl (C))YAVD_	MLVGDVC(1)YAVD	M(1)LVGDVCYAVD	MLVGDVC(66)YAVD	M(66)LVGDVCYAVD	0	1	1		ENST00000372232.7_1_X:107372037-107374546:+|nuORF	ENST00000372232.7_1_X:107372037-107374546:+|nuORF	ENST00000372232.7_1_X:107372037-107374546:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	629.27783203125	2	629.278131	1256.54171	-2.0177	-0.0012697	1.8196	0.001145	-0.1981	-0.00012466	629.2792052758709	117.72	2.1801	117.57	117.19	119.37	-0.14755					115	43	5	0	0	0	0.32727	1	11296	11296		66.429	7.6473	1	400120			38466	10974	31743	31766	41793	41793	114	313			-0.07629922788100885
MLVGDVCYAVD	11	Carbamidomethyl (C),Oxidation (M)	_M(Oxidation (M))LVGDVC(Carbamidomethyl (C))YAVD_	MLVGDVC(1)YAVD	M(1)LVGDVCYAVD	MLVGDVC(74)YAVD	M(74)LVGDVCYAVD	0	1	1		ENST00000372232.7_1_X:107372037-107374546:+|nuORF	ENST00000372232.7_1_X:107372037-107374546:+|nuORF	ENST00000372232.7_1_X:107372037-107374546:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	629.2774658203125	2	629.278131	1256.54171	0.35686	0.00022457	-0.72731	-0.00045768	-0.37045	-0.00023312	629.2776166933829	118.32	2.3254	117.29	116.93	119.26	-1.0324					108	46	4	0	0	0	0.2426	1	8939	8939		74.255	12.148	1	584120			38467	10974	31743	31766	41794	41794	114	313			-0.07629922788100885
MLVGKCRSHL	10	Oxidation (M)	_M(Oxidation (M))LVGKCRSHL_		M(1)LVGKCRSHL		M(67)LVGKCRSHL	0	0	1		HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|79|2|sense	HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|79|2|sense	HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|79|2|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	580.3038330078125	2	580.307361	1158.60017	-0.14076	-8.1684E-05	-4.4492	-0.0025819	-4.59	-0.0026636	580.3047218344606	114.4	0.637	114.4	114.15	114.79	0					33	13	4	0	0	0	0.40664	1	13042	13042		67.494	12.717	1	1919600			38468	14469	31744	31767	41795	41795		359			0.027212233677119002
MLVIAYVR	8	Unmodified	_MLVIAYVR_					0	0	0			REV__RBBP9|p.V96M|1|0.06|ENSG00000089050|chr20:18490443-18490443|C/T|missense_variant	REV__RBBP9|p.V96M|1|0.06|ENSG00000089050|chr20:18490443-18490443|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	482.7851257324219	2	482.786056	963.557558	-1.6052	-0.00077495	-2.0927	-0.0010103	-3.6978	-0.0017853	482.78488077781606	119.78	1.8256	119.61	119.25	121.08	-0.17138					103	36	4	0	0	0	0.69415	3	11518	11518;11530;11561		44.531	7.5026	1	403680	+		38469	29330	31745	31768	41796;41797;41798	41796					0.07432196301772365
MLVISPIGAN	10	Unmodified	_MLVISPIGAN_					0	0	0		tr|A0A553SHY2|A0A553SHY2_NIACINAD-dependentepimerase/dehydratasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_13850PE=4SV=1	tr|A0A553SHY2|A0A553SHY2_NIACINAD-dependentepimerase/dehydratasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_13850PE=4SV=1	tr|A0A553SHY2|A0A553SHY2_NIACINAD-dependentepimerase/dehydratasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_13850PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	507.7879333496094	2	507.786253	1013.55795	1.7892	0.00090851	1.3158	0.00066814	3.1049	0.0015766	507.78667898713246	116.7	0.99822	116.7	116.42	117.41	0					37	16	4	0	0	0	0.37436	1	13354	13354		71.877	5.98	1	777260			38470	33326	31746	31769	41799	41799					0.05171571230948757
MLVKNNTMGG	10	Unmodified	_MLVKNNTMGG_					0	0	0			REV__GK2|p.G521Vfs*16|1|0.06|ENSG00000196475|chr4:79406641-79406641|T/-|frameshift_variant	REV__GK2|p.G521Vfs*16|1|0.06|ENSG00000196475|chr4:79406641-79406641|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.7631225585938	2	532.764994	1063.51544	-0.39697	-0.00021149	-2.8055	-0.0014947	-3.2025	-0.0017062	532.763363306674	114.08	2.2167	112.64	111.9	114.12	-1.4461					106	43	4	0	0	0	0.58067	1	10593	10593		44.377	7.2181	1	502590	+		38471	22834	31747	31770	41800	41800					-0.013781471689071623
MLVLAHKN	8	Unmodified	_MLVLAHKN_					0	0	0		ENST00000520773.5_1_5:150322224-150323475:-|nuORF	ENST00000520773.5_1_5:150322224-150323475:-|nuORF	ENST00000520773.5_1_5:150322224-150323475:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	463.2686767578125	2	463.26803	924.521507	1.846	0.00085519	-3.3985	-0.0015744	-1.5525	-0.00071923	463.26624558934645	112.58	0.99352	112.58	112.34	113.33	0					39	21	3	0	0	0	0.7043	1	12841	12841		42.474	5.446	1	472630			38472	13113	31748	31771	41801	41801					0.056227391249194625
MLVLNLSRFI	10	Unmodified	_MLVLNLSRFI_					0	0	0			REV__nc|ENSG00000159110|P48551-3|IFNAR2	REV__nc|ENSG00000159110|P48551-3|IFNAR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	604.2483520507812	2	603.357376	1204.7002	1.2457	0.0007516	-1.3479	-0.00081324	-0.10216	-6.1639E-05	603.3566185540872	124.37	0.45936	124.37	124.24	124.7	0					13	9	2	0	0	0	0.026994	1	14342	14342		40.778	10.275	1	77309	+		38473	20594	31749	31772	41802	41802					0.10603783973147074
MLVLNLSRFI	10	Unmodified	_MLVLNLSRFI_					0	0	0			REV__nc|ENSG00000159110|P48551-3|IFNAR2	REV__nc|ENSG00000159110|P48551-3|IFNAR2	MULTI-MSMS	OvCa9_classI_Rep2	2	402.5741271972656	3	402.57401	1204.7002	0.99404	0.00040018	2.5316	0.0010192	3.5257	0.0014193	402.5751079773302	47.265	1.7351	44.555	43.894	45.629	-2.7097					71	32	3	0	0	0	0.64697	1	2893	2893		36.447	2.5251	1	211230	+		38474	20594	31749	31772	41803	41803					0.10603783973147074
MLVNAEEILQ	10	Unmodified	_MLVNAEEILQ_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MULTI-MSMS	OvCa99_classI_Rep5	1	580.3026123046875	2	580.305007	1158.59546	0.24108	0.0001399	-3.9402	-0.0022865	-3.6991	-0.0021466	580.302813675825	81.135	0.74229	81.135	80.871	81.613	0					47	17	5	0	0	0	0.44431	1	8333	8333		62.107	10.772	1	7160300			38475	6864	31750	31773	41804	41804					0.022506177059312904
MLVNYHLP	8	Unmodified	_MLVNYHLP_					0	0	0			REV__OR10H2|p.R131H|1|0.05|ENSG00000171942|chr19:15728435-15728435|G/A|missense_variant	REV__OR10H2|p.R131H|1|0.05|ENSG00000171942|chr19:15728435-15728435|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	493.76104736328125	2	493.760038	985.505523	-0.567	-0.00027996	2.7109	0.0013386	2.1439	0.0010586	493.7612320121243	133.32	1.1284	132.19	131.88	133.01	-1.1249					55	22	3	0	0	0	0.75991	1	10721	10721		21.702	2.3424	1	214690	+		38476	29266	31751	31774	41805	41805					0.012190328880137713
MLVPDSGVR	9	Unmodified	_MLVPDSGVR_					0	0	0			REV__nc|ENSG00000114423|Q13191-3|CBLB	REV__nc|ENSG00000114423|Q13191-3|CBLB	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.79376220703125	2	487.260402	972.506251	-0.45381	-0.00022112	-0.18058	-8.7989E-05	-0.63439	-0.00030911	487.2602595240226	54.113	0.81291	54.113	53.692	54.505	0					41	19	3	0	0	0	0.027455	1	4337	4337		42.396	5.237	1	1799500	+		38477	18187	31752	31775	41806	41806					0.018898275370702322
MLVQKKMR	8	Unmodified	_MLVQKKMR_					0	0	0			REV__tr|A0A7D6ZVX7|A0A7D6ZVX7_9CLOT2-oxoacid:acceptoroxidoreductasesubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_15590PE=4SV=1	REV__tr|A0A7D6ZVX7|A0A7D6ZVX7_9CLOT2-oxoacid:acceptoroxidoreductasesubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_15590PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	517.30419921875	2	517.30409	1032.59363	2.058	0.0010646	1.2992	0.00067209	3.3572	0.0017367	517.3046010027335	125.01	0.9949	123.96	123.58	124.58	-1.0519					44	18	3	0	0	0	0.7043	1	9716	9716		42.474	3.6683	1	149470	+		38478	32267	31753	31776	41807	41807					0.07863330206987484
MLVQKRKGF	9	Unmodified	_MLVQKRKGF_					0	0	0			REV__ENST00000327827.11_1_16:9212813-9213104:+|nuORF	REV__ENST00000327827.11_1_16:9212813-9213104:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8306884765625	2	553.828786	1105.64302	1.4061	0.00077877	0.88233	0.00048866	2.2885	0.0012674	553.8291816775361	139.45	3.0735	137.95	136.76	139.84	-1.4952					150	61	3	0	0	0	0.67509	1	13765	13765		23.042	0	1	110800	+		38479	24503	31754	31777	41808	41808					0.09442361487435846
MLVRKNFNN	9	Unmodified	_MLVRKNFNN_					0	0	0		tr|A0A7D6ZH01|A0A7D6ZH01_9CLOTYitTfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21090PE=4SV=1	tr|A0A7D6ZH01|A0A7D6ZH01_9CLOTYitTfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21090PE=4SV=1	tr|A0A7D6ZH01|A0A7D6ZH01_9CLOTYitTfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21090PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	568.3076782226562	2	568.305675	1134.5968	0.18699	0.00010627	4.329	0.0024602	4.516	0.0025665	568.3083887469526	107.06	1.5103	105.8	105.06	106.57	-1.267					48	23	3	0	0	0	0.46377	1	7585	7585		45.952	6.6991	1	238690			38480	35557	31755	31778	41809	41809					0.03488296585351236
MLVRPIHQ	8	Unmodified	_MLVRPIHQ_					0	0	0			REV__ENST00000449426.1_1_7:56356827-56358135:+|nuORF	REV__ENST00000449426.1_1_7:56356827-56358135:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.78912353515625	2	497.286754	992.558955	0.10306	5.1253E-05	-1.4238	-0.00070804	-1.3207	-0.00065678	497.2840325212611	112.3	1.9661	110.78	110.21	112.18	-1.5111					120	38	5	0	0	0	0.7043	1	10415	10415		42.474	0	1	403480	+		38481	25947	31756	31779	41810	41810					0.062378303905234134
MLVRSAAGSP	10	Unmodified	_MLVRSAAGSP_					0	0	0			REV__ENST00000283290.9_1_3:112280446-112280620:-|nuORF	REV__ENST00000283290.9_1_3:112280446-112280620:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.7669677734375	2	494.765852	987.51715	0.032511	1.6086E-05	-0.47423	-0.00023463	-0.44172	-0.00021855	494.7654705234626	78.054	1.1953	75.238	74.777	75.973	-2.8165					55	24	4	0	0	0	0.44431	1	6287	6287		62.107	1.1355	1	863990	+		38482	24123	31757	31780	41811	41811					0.022892299113550507
MLVSMSSAWET	11	Oxidation (M)	_M(Oxidation (M))LVSMSSAWET_		M(1)LVSMSSAWET		M(52)LVSM(-52)SSAWET	0	0	1		ENSG00000176136|ENST00000589410|MC5R	ENSG00000176136|ENST00000589410|MC5R	ENSG00000176136|ENST00000589410|MC5R	MULTI-MSMS	OvCa99_classI_Rep5	1	629.28125	2	629.278131	1256.54171	2.2285	0.0014023	0.040168	2.5277E-05	2.2686	0.0014276	629.278149717093	117.77	1.9644	117.77	117.46	119.43	0					103	41	3	0	0	0	0.32727	1	13533	13533		66.429	6.311	2	5902300			38483	7584	31758	31781	41812	41812		229			-0.07629922788100885
MLVVKEKLP	9	Unmodified	_MLVVKEKLP_					0	0	0			REV__ENSG00000120029|ENST00000370033|ARMH3	REV__ENSG00000120029|ENST00000370033|ARMH3	MULTI-MSMS	OvCa99_classI_Rep5	1	528.8310546875	2	528.827921	1055.64129	-0.51799	-0.00027393	3.3714	0.0017829	2.8534	0.001509	528.8297729087501	55.744	0.8632	55.744	55.315	56.178	0					54	20	4	0	0	0	0.28934	1	4576	4576		64.207	7.4862	1	6802800	+		38484	18481	31759	31782	41813	41813					0.11569307678814766
MLVWLGQPV	9	Unmodified	_MLVWLGQPV_					0	0	0			REV__ENST00000225760.5_1_17:62075843-62079332:+|nuORF	REV__ENST00000225760.5_1_17:62075843-62079332:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.3075561523438	2	521.791338	1041.56812	-0.57946	-0.00030236	3.1314	0.0016339	2.5519	0.0013316	521.7931979453152	90.883	0.92483	88.308	87.904	88.829	-2.575					28	17	2	0	0	0	0.027462	1	7813	7813		33.516	1.9858	1	81379	+		38485	23763	31760	31783	41814	41814					0.04900178956199852
MLVYVYFPL	9	Unmodified	_MLVYVYFPL_					0	0	0		ENST00000581310.5_1_18:51883493-51884258:-|nuORF	ENST00000581310.5_1_18:51883493-51884258:-|nuORF	ENST00000581310.5_1_18:51883493-51884258:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.7890014648438	2	572.809196	1143.60384	2.8173	0.0016138	-2.4871	-0.0014247	0.33014	0.00018911	573.3087082009823	89.701	0.5296	89.701	89.275	89.804	0					17	12	2	0	0	0	0.027462	1	9588	9588		49.211	17.681	1	467570			38486	13995	31761	31784	41815	41815					0.03778216413206792
MLWIHPIKT	9	Unmodified	_MLWIHPIKT_					0	0	0			REV__ENSG00000125531|ENST00000370097|FNDC11	REV__ENSG00000125531|ENST00000370097|FNDC11	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.80908203125	2	569.825712	1137.63687	-0.24134	-0.00013752	-0.21109	-0.00012028	-0.45243	-0.00025781	569.8254124931384	29.96	0.40102	29.96	29.785	30.186	0					15	7	3	0	0	0	0.027462	1	1100	1100		29.15	4.9468	1	195460	+		38487	18731	31762	31785	41816	41816					0.07355843255891159
MLWKCKSFP	9	Oxidation (M)	_M(Oxidation (M))LWKCKSFP_		M(1)LWKCKSFP		M(58)LWKCKSFP	0	0	1			REV__ENST00000538204.5_1_X:131512512-131512599:-|nuORF	REV__ENST00000538204.5_1_X:131512512-131512599:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2899780273438	2	578.288105	1154.56166	-1.351	-0.00078126	3.8003	0.0021977	2.4493	0.0014164	578.2900356526777	133.55	3.1988	132.42	131.63	134.83	-1.1249					151	64	4	0	0	0	0.34496	1	10727	10727		57.811	9.8957	1	94067	+		38488	27322	31763	31786	41817	41817		604			-0.009440822668466353
MLWKQALN	8	Unmodified	_MLWKQALN_					0	0	0			REV__ENSG00000117408|ENST00000372343|IPO13	REV__ENSG00000117408|ENST00000372343|IPO13	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.7601318359375	2	502.273312	1002.53207	-1.2252	-0.0006154	2.6857	0.001349	1.4605	0.00073357	502.2747459708285	70.538	1.4106	67.057	66.589	67.999	-3.4812					46	28	2	0	0	0	0.028476	1	5282	5282		31.955	0	1	362450	+		38489	18350	31764	31787	41818	41818					0.030907217793242125
MLYDIYKP	8	Unmodified	_MLYDIYKP_					0	0	0			REV__nc|ENSG00000114978|Q9H8S9-2|MOB1A	REV__nc|ENSG00000114978|Q9H8S9-2|MOB1A	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.3278198242188	2	521.767529	1041.5205	1.5149	0.00079044	0.032648	1.7035E-05	1.5476	0.00080748	521.7673719944911	133.94	0.42995	133.94	133.72	134.15	0					12	8	2	0	0	0	0.028476	1	15584	15584		40.778	17.736	1	62277	+		38490	18211	31765	31788	41819	41819					0.0014047996535282437
MLYIDDVPK	9	Unmodified	_MLYIDDVPK_					0	0	0		tr|A0A7D6VM95|A0A7D6VM95_9CLOTTranscriptionantiterminationproteinNusBOS=ClostridiumintestinaleOX=36845GN=nusBPE=3SV=1	tr|A0A7D6VM95|A0A7D6VM95_9CLOTTranscriptionantiterminationproteinNusBOS=ClostridiumintestinaleOX=36845GN=nusBPE=3SV=1	tr|A0A7D6VM95|A0A7D6VM95_9CLOTTranscriptionantiterminationproteinNusBOS=ClostridiumintestinaleOX=36845GN=nusBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.3471069335938	2	547.283543	1092.55253	2.6032	0.0014247	-2.7746	-0.0015185	-0.17132	-9.3762E-05	547.2827971814615	88.749	1.0101	88.749	88.384	89.394	0					34	24	2	0	0	0	0.027455	1	9500	9500		42.396	3.59	1	710490			38491	34652	31766	31789	41820	41820					0.009958476484825951
MLYIDDVPK	9	Unmodified	_MLYIDDVPK_					0	0	0		tr|A0A7D6VM95|A0A7D6VM95_9CLOTTranscriptionantiterminationproteinNusBOS=ClostridiumintestinaleOX=36845GN=nusBPE=3SV=1	tr|A0A7D6VM95|A0A7D6VM95_9CLOTTranscriptionantiterminationproteinNusBOS=ClostridiumintestinaleOX=36845GN=nusBPE=3SV=1	tr|A0A7D6VM95|A0A7D6VM95_9CLOTTranscriptionantiterminationproteinNusBOS=ClostridiumintestinaleOX=36845GN=nusBPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	547.283543	1092.55253	1.7608	0.00096365	-7.0531	-0.0038601	-5.2924	-0.0028964	547.2791452583059	90.414	0.93994	89.112	88.631	89.571	-1.302	0.10403	-0.00084554	NaN	42.396	32	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27174			38492	34652	31766	31789							0.009958476484825951
MLYIDDVPK	9	Unmodified	_MLYIDDVPK_					0	0	0		tr|A0A7D6VM95|A0A7D6VM95_9CLOTTranscriptionantiterminationproteinNusBOS=ClostridiumintestinaleOX=36845GN=nusBPE=3SV=1	tr|A0A7D6VM95|A0A7D6VM95_9CLOTTranscriptionantiterminationproteinNusBOS=ClostridiumintestinaleOX=36845GN=nusBPE=3SV=1	tr|A0A7D6VM95|A0A7D6VM95_9CLOTTranscriptionantiterminationproteinNusBOS=ClostridiumintestinaleOX=36845GN=nusBPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	547.283543	1092.55253	-1.2726	-0.00069649	-6.3594	-0.0034804	-7.632	-0.0041769	547.2799458296424	91.108	0.80667	89.084	88.727	89.534	-2.0241	0.076532	-8.6192E-05	NaN	42.396	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29329			38493	34652	31766	31789							0.009958476484825951
MLYIDDVPK	9	Unmodified	_MLYIDDVPK_					0	0	0		tr|A0A7D6VM95|A0A7D6VM95_9CLOTTranscriptionantiterminationproteinNusBOS=ClostridiumintestinaleOX=36845GN=nusBPE=3SV=1	tr|A0A7D6VM95|A0A7D6VM95_9CLOTTranscriptionantiterminationproteinNusBOS=ClostridiumintestinaleOX=36845GN=nusBPE=3SV=1	tr|A0A7D6VM95|A0A7D6VM95_9CLOTTranscriptionantiterminationproteinNusBOS=ClostridiumintestinaleOX=36845GN=nusBPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	547.283543	1092.55253	-0.80948	-0.00044302	-6.2676	-0.0034302	-7.0771	-0.0038732	547.2800677296549	91.629	1.1166	89.086	88.501	89.618	-2.5425	0.078446	1.4269E-05	NaN	42.396	35	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32950			38494	34652	31766	31789							0.009958476484825951
MLYKNLEIID	10	Unmodified	_MLYKNLEIID_					0	0	0		ENST00000573577.5_1_17:5336118-5336172:+|nuORF	ENST00000573577.5_1_17:5336118-5336172:+|nuORF	ENST00000573577.5_1_17:5336118-5336172:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	626.3380126953125	2	626.336307	1250.65806	-0.68266	-0.00042757	3.7119	0.0023249	3.0292	0.0018973	626.338481713203	123.13	1.2816	122.91	122.51	123.79	-0.21803					72	25	4	0	0	0	0.5675	1	11932	11932		45.972	6.7194	1	275140			38495	13920	31767	31790	41821	41821					0.04275763774103325
MLYLAPPI	8	Unmodified	_MLYLAPPI_					0	0	0		L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|3|1|sense	L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|3|1|sense	L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|3|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.7733154296875	2	459.261882	916.509211	0.2126	9.764E-05	4.2823	0.0019667	4.4949	0.0020643	459.2637295960475	66.695	0.20799	66.695	66.531	66.739	0					8	4	2	0	0	0	0.028476	1	6199	6199		10.185	1.3624	1	293700			38496	14657	31768	31791	41822	41822					0.047617026618581804
MLYSPPLF	8	Unmodified	_MLYSPPLF_					0	0	0			REV__nc|ENSG00000165525|O60524-5|NEMF	REV__nc|ENSG00000165525|O60524-5|NEMF	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.2557373046875	2	484.251514	966.488476	1.2001	0.00058114	2.0417	0.00098868	3.2417	0.0015698	484.25246897251884	86.335	1.4868	83.697	83.352	84.838	-2.6384					57	29	4	0	0	0	0.64377	1	7298	7298		54.765	7.9982	1	526820	+		38497	21097	31769	31792	41823	41823					0.003891122822096804
MMCQLIDRH	9	Unmodified	_MMCQLIDRH_					0	0	0		tr|A0A553SJX6|A0A553SJX6_NIACICBSdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_17765PE=4SV=1	tr|A0A553SJX6|A0A553SJX6_NIACICBSdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_17765PE=4SV=1	tr|A0A553SJX6|A0A553SJX6_NIACICBSdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_17765PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	573.7681884765625	2	573.764471	1145.51439	2.0065	0.0011512	3.2208	0.001848	5.2273	0.0029992	573.7659388144469	85.933	0.8061	85.933	85.705	86.511	0					32	19	3	0	0	0	0.42676	1	9037	9037		49.442	1.5259	1	1630700			38498	33549	31770	31793	41824	41824					-0.05254684809460741
MMDISIFVLA	10	Oxidation (M)	_M(Oxidation (M))MDISIFVLA_		M(0.5)M(0.5)DISIFVLA		M(0)M(0)DISIFVLA	0	0	1		tr|A0A553SKE3|A0A553SKE3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_18605PE=4SV=1	tr|A0A553SKE3|A0A553SKE3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_18605PE=4SV=1	tr|A0A553SKE3|A0A553SKE3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_18605PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2899780273438	2	578.293053	1154.57155	-7.6021	-0.0043963	1.6901	0.00097735	-5.9121	-0.0034189	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.58282	1	14141	14141		44.117	6.9577	2	1429200			38499	33609	31771	31794	41825	41825		739;740			0.00045060947900310566
MMEKILGPIP	10	Unmodified	_MMEKILGPIP_					0	0	0		ENST00000569406.5_1_15:74914809-74922221:+|nuORF;ENST00000562078.5_1_15:74917060-74922221:+|nuORF;ENST00000454830.6_1_15:74914310-74922221:+|nuORF;nc|ENSG00000179335|P49761-3|CLK3;ENSG00000179335|ENST00000395066|CLK3	ENST00000569406.5_1_15:74914809-74922221:+|nuORF	ENST00000569406.5_1_15:74914809-74922221:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	564.8109741210938	2	564.811413	1127.60827	0.87316	0.00049317	-2.644	-0.0014934	-1.7709	-0.0010002	564.8098555563217	161.04	2.4687	161.04	160.06	162.53	0					104	48	3	0	0	0	0.48198	1	18836	18836		56.721	12.604	1	105670			38500	7816	31772	31795	41826	41826					0.04957357564467202
MMEKILGPIP	10	Unmodified	_MMEKILGPIP_					0	0	0		ENST00000569406.5_1_15:74914809-74922221:+|nuORF;ENST00000562078.5_1_15:74917060-74922221:+|nuORF;ENST00000454830.6_1_15:74914310-74922221:+|nuORF;nc|ENSG00000179335|P49761-3|CLK3;ENSG00000179335|ENST00000395066|CLK3	ENST00000569406.5_1_15:74914809-74922221:+|nuORF	ENST00000569406.5_1_15:74914809-74922221:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	564.81005859375	2	564.811413	1127.60827	-3.7232	-0.0021029	2.1292	0.0012026	-1.594	-0.00090032	564.8125164297064	146.26	1.3933	145.3	144.9	146.29	-0.95946					62	27	3	0	0	0	0.6104	1	12267	12267		40.778	4.3314	1	156470			38501	7816	31772	31795	41827	41827					0.04957357564467202
MMENLVWIS	9	Unmodified	_MMENLVWIS_					0	0	0		ENST00000525819.1_1_4:102117192-102268666:-|nuORF	ENST00000525819.1_1_4:102117192-102268666:-|nuORF	ENST00000525819.1_1_4:102117192-102268666:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.8269653320312	2	561.769745	1121.52494	3.2365	0.0018182	-0.45414	-0.00025512	2.7824	0.001563	561.7693573961178	100.88	0.75365	100.88	100.73	101.48	0					28	17	2	0	0	0	0.027462	1	11258	11258		23.042	0	1	585190			38502	13201	31773	31796	41828	41828					-0.03096378883401485
MMFPHQLPP	9	Unmodified	_MMFPHQLPP_					0	0	0		ENSG00000080854|ENST00000533871|IGSF9B;nc|ENSG00000080854|Q9UPX0|IGSF9B	ENSG00000080854|ENST00000533871|IGSF9B	ENSG00000080854|ENST00000533871|IGSF9B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.280517578125	2	549.267173	1096.51979	-0.26563	-0.0001459	-1.4575	-0.00080056	-1.7231	-0.00094646	549.2663991774224	116.62	0.67001	115.25	114.94	115.61	-1.3645					19	12	2	0	0	0	0.027462	1	10860	10860		25.45	0	1	16378			38503	1646	31774	31797	41829	41829					-0.02460637955346101
MMFWRSVVFK	10	Unmodified	_MMFWRSVVFK_					0	0	0		tr|A0A553SL33|A0A553SL33_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_19875PE=4SV=1	tr|A0A553SL33|A0A553SL33_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_19875PE=4SV=1	tr|A0A553SL33|A0A553SL33_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_19875PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.9324951171875	3	444.231478	1329.6726	0.25723	0.00011427	1.4412	0.00064024	1.6985	0.00075451	444.2320324942936	28.713	0.25025	28.713	28.588	28.838	0					8	4	2	0	0	0	0.026975	1	970	970		31.634	5.7426	1	14182			38504	33680	31775	31798	41830	41830					0.020955574412482747
MMFYVLISIS	10	Unmodified	_MMFYVLISIS_					0	0	0			REV__tr|A0A7D6ZIV8|A0A7D6ZIV8_9CLOTL,D-transpeptidase/peptidoglycanbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08680PE=4SV=1	REV__tr|A0A7D6ZIV8|A0A7D6ZIV8_9CLOTL,D-transpeptidase/peptidoglycanbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08680PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	602.3134155273438	2	602.311246	1202.60794	2.9755	0.0017922	0.51317	0.00030909	3.4887	0.0021013	602.3128378518785	99.254	0.32883	99.254	99.076	99.405	0					18	7	3	0	0	0	0.56767	1	10974	10974		45.952	3.5558	1	1988400	+		38505	32071	31776	31799	41831	41831					0.014739378446392948
MMGGTRSSVC	10	Carbamidomethyl (C)	_MMGGTRSSVC(Carbamidomethyl (C))_	MMGGTRSSVC(1)		MMGGTRSSVC(79)		0	1	0			REV__ENSG00000066084|ENST00000301180|DIP2B	REV__ENSG00000066084|ENST00000301180|DIP2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.7796630859375	2	543.230461	1084.44637	2.3419	0.0012722	-3.3352	-0.0018118	-0.99338	-0.00053963	543.228336538462	88.896	0.68542	88.896	88.467	89.153	0					22	16	2	0	0	0	0.026723	1	9427	9427		79.451	10.664	1	1238400	+		38506	16808	31777	31800	41832	41832	191				-0.09247554460125684
MMIFSGLLVN	10	Oxidation (M)	_MM(Oxidation (M))IFSGLLVN_		M(0.005)M(0.995)IFSGLLVN		M(-23)M(23)IFSGLLVN	0	0	1		ENSG00000118777|ENST00000237612|ABCG2	ENSG00000118777|ENST00000237612|ABCG2	ENSG00000118777|ENST00000237612|ABCG2	MULTI-MSMS	OvCa99_classI_Rep5	1	570.7928466796875	2	570.79322	1139.57189	0.78395	0.00044747	-0.065303	-3.7275E-05	0.71865	0.0004102	570.7927952095378	124.13	0.45576	124.13	123.97	124.42	0					22	9	4	0	0	0	0.46756	1	14318	14318		58.782	7.5893	2	382930			38507	3324	31778	31801	41833	41833		104			0.007684806677616507
MMILNTQIQN	10	Unmodified	_MMILNTQIQN_					0	0	0			REV__ENST00000316059.6_1_11:58352348-58378460:+|nuORF	REV__ENST00000316059.6_1_11:58352348-58378460:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	603.3089599609375	2	603.304484	1204.59441	1.637	0.00098764	1.4144	0.00085332	3.0515	0.001841	603.3051493315845	140.23	0.90874	138.74	138.41	139.32	-1.4952					23	17	2	0	0	0	0.67931	1	13674	13674		32.812	0	1	12666	+		38508	24403	31779	31802	41834	41834					0.00030080065403126355
MMILNTQIQN	10	Unmodified	_MMILNTQIQN_					0	0	0			REV__ENST00000316059.6_1_11:58352348-58378460:+|nuORF	REV__ENST00000316059.6_1_11:58352348-58378460:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	603.304484	1204.59441	-1.397	-0.0008428	3.9608	0.0023896	2.5638	0.0015468	603.3067747229514	139.19	0.78824	138.96	138.71	139.5	-0.22697	0.14363	0.0010864	NaN	32.812	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14212	+		38509	24403	31779	31802							0.00030080065403126355
MMILNTQIQN	10	Unmodified	_MMILNTQIQN_					0	0	0			REV__ENST00000316059.6_1_11:58352348-58378460:+|nuORF	REV__ENST00000316059.6_1_11:58352348-58378460:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	603.304484	1204.59441	-0.054284	-3.275E-05	2.8671	0.0017297	2.8128	0.001697	603.3061921127202	139.8	0.88724	138.76	138.5	139.38	-1.0339	-0.059059	-0.00023324	NaN	32.812	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19583	+		38510	24403	31779	31802							0.00030080065403126355
MMKYIIDL	8	Unmodified	_MMKYIIDL_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-MSMS	OvCa99_classI_Rep5	1	513.7691040039062	2	513.771757	1025.52896	-0.92953	-0.00047757	-3.0062	-0.0015445	-3.9357	-0.0020221	513.7700250362085	37.275	0.55236	37.275	37.069	37.621	0					24	11	3	0	0	0	0.65582	1	2029	2029		52.299	15.14	1	342690	+		38511	23506	31780	31803	41835	41835					0.017217106103316837
MMLFIWVLA	9	Unmodified	_MMLFIWVLA_					0	0	0		tr|A0A553STN0|A0A553STN0_NIACIK(+)-transportingATPasesubunitFOS=NialliacirculansOX=1397GN=kdpFPE=4SV=1	tr|A0A553STN0|A0A553STN0_NIACIK(+)-transportingATPasesubunitFOS=NialliacirculansOX=1397GN=kdpFPE=4SV=1	tr|A0A553STN0|A0A553STN0_NIACIK(+)-transportingATPasesubunitFOS=NialliacirculansOX=1397GN=kdpFPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3099975585938	2	562.305767	1122.59698	1.6081	0.00090426	3.2979	0.0018544	4.906	0.0027587	562.3076275952775	112.77	1.839	111.26	110.53	112.37	-1.5111					103	36	5	0	0	0	0.53728	1	10474	10474		39.021	2.5747	1	1731000			38512	34507	31781	31804	41836	41836					0.04058580260971212
MMLPLGSGHA	10	Unmodified	_MMLPLGSGHA_					0	0	0			REV__ABCB4|p.I65V|1|0.47|ENSG00000005471|chr7:87462851-87462851|T/C|missense_variant	REV__ABCB4|p.I65V|1|0.47|ENSG00000005471|chr7:87462851-87462851|T/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3036193847656	2	507.24898	1012.48341	0.13868	7.0343E-05	-0.67998	-0.00034492	-0.5413	-0.00027457	507.2483475485812	115.02	0.51111	113.62	113.41	113.92	-1.3977					14	9	2	0	0	0	0.026982	1	10704	10704		30.504	3.7075	1	11149	+		38513	15548	31782	31805	41837	41837					-0.022335148520483017
MMLPLGSGHA	10	Unmodified	_MMLPLGSGHA_					0	0	0			REV__ABCB4|p.I65V|1|0.47|ENSG00000005471|chr7:87462851-87462851|T/C|missense_variant	REV__ABCB4|p.I65V|1|0.47|ENSG00000005471|chr7:87462851-87462851|T/C|missense_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	507.24898	1012.48341	-0.54627	-0.0002771	0.19625	9.9549E-05	-0.35002	-0.00017755	507.24910983100244	114.65	0.6416	113.59	113.35	114	-1.055	-0.015783	0.00031982	NaN	30.504	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13072	+		38514	15548	31782	31805							-0.022335148520483017
MMLYVTASNP	10	Unmodified	_MMLYVTASNP_					0	0	0			REV__ENST00000540494.5_1_2:10950403-10950481:-|nuORF	REV__ENST00000540494.5_1_2:10950403-10950481:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	563.3530883789062	2	563.767203	1125.51985	-1.1043	-0.00062254	0.88457	0.00049869	-0.21969	-0.00012385	563.7677061879382	117.45	0.4465	116.42	116.14	116.59	-1.0324					11	8	2	0	0	0	0.02663	1	8806	8806		60.118	15.741	1	10629	+		38515	27350	31783	31806	41838	41838					-0.03788682745994265
MMMSSVLIQ	9	2 Oxidation (M)	_MM(Oxidation (M))M(Oxidation (M))SSVLIQ_		M(0.043)M(0.979)M(0.979)SSVLIQ		M(-17)M(17)M(17)SSVLIQ	0	0	2		ENST00000481219.1_1_1:150902558-150902633:+|nuORF	ENST00000481219.1_1_1:150902558-150902633:+|nuORF	ENST00000481219.1_1_1:150902558-150902633:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	536.249755859375	2	536.247788	1070.48102	2.2652	0.0012147	2.5093	0.0013456	4.7745	0.0025603	536.2490458807978	120.46	1.5758	119.43	119.12	120.69	-1.0271					80	30	4	0	0	0	0.16524	1	9205	9205		82.305	11.009	3	464170			38516	12541	31784	31807	41839	41839		337;338			-0.051397313720144666
MMNLRYGF	8	Unmodified	_MMNLRYGF_					0	0	0		nc|ENSG00000086717|O14829-2|PPEF1;nc|ENSG00000086717|O14829-3|PPEF1;ENSG00000086717|ENST00000470157|PPEF1;nc|ENSG00000086717|O14829-4|PPEF1;nc|ENSG00000086717|O14829-5|PPEF1	nc|ENSG00000086717|O14829-2|PPEF1	nc|ENSG00000086717|O14829-2|PPEF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7938842773438	2	516.243698	1030.47284	2.2331	0.0011528	-1.8859	-0.0009736	0.34719	0.00017923	516.2425166766503	84.583	0.49187	84.583	84.431	84.923	0					16	11	2	0	0	0	0.028476	1	8866	8866		28.254	5.2176	1	439270			38517	14907	31785	31808	41840	41840					-0.041174975064905084
MMNRADFMQ	9	Unmodified	_MMNRADFMQ_					0	0	0			REV__ENSG00000176014|ENST00000317702|TUBB6	REV__ENSG00000176014|ENST00000317702|TUBB6	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.8229370117188	2	572.240829	1142.46711	-0.24281	-0.00013894	0.56307	0.00032221	0.32026	0.00018327	572.7423583189644	73.499	0.24294	73.499	73.317	73.56	0					8	5	2	0	0	0	0.027462	1	7204	7204		42.396	20.436	1	121480	+		38518	21926	31786	31809	41841	41841					-0.0984296408046248
MMPLCLLIY	9	Unmodified	_MMPLCLLIY_					0	0	0		ENSG00000125255|ENST00000245312|SLC10A2	ENSG00000125255|ENST00000245312|SLC10A2	ENSG00000125255|ENST00000245312|SLC10A2	MULTI-MSMS	OvCa99_classI_Rep5	1	548.783935546875	2	548.78381	1095.55307	1.9742	0.0010834	-2.0272	-0.0011125	-0.052984	-2.9077E-05	548.7824739396441	120.3	3.6821	120.3	119.83	123.51	0					197	82	4	0	0	0	0.42921	1	13810	13810		49.211	1.5535	1	5725800			38519	3694	31787	31810	41842	41842					0.009112277723716034
MMPLVLHHPE	10	Unmodified	_MMPLVLHHPE_					0	0	0		ENST00000498475.2_1_2:53956703-54087122:-|nuORF;ENST00000394705.2_1_2:54081959-54087122:-|nuORF;nc|ENSG00000115239|Q9Y575-3|ASB3	ENST00000498475.2_1_2:53956703-54087122:-|nuORF	ENST00000498475.2_1_2:53956703-54087122:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	603.3056030273438	2	602.304287	1202.59402	2.0687	0.001246	2.9334	0.0017668	5.0021	0.0030128	602.3058413502723	113.7	0.95193	113.7	113.47	114.42	0					39	21	3	0	0	0	0.026968	1	12942	12942		24.203	4.206	1	2256000			38520	11275	31788	31811	41843	41843					0.0008270513615116215
MMPVTSIHME	10	Unmodified	_MMPVTSIHME_					0	0	0		ENST00000456917.1_1_21:26946359-26946410:+|nuORF	ENST00000456917.1_1_21:26946359-26946410:+|nuORF	ENST00000456917.1_1_21:26946359-26946410:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.7994995117188	2	588.266513	1174.51847	1.1371	0.00066894	-0.367	-0.00021589	0.77014	0.00045305	588.2660796476125	145.14	0.50143	145.14	144.89	145.39	0					14	10	2	0	0	0	0.026734	1	16975	16975		39.253	0	1	51098			38521	12116	31789	31812	41844	41844					-0.06180640106413193
MMQRWLESRAF	11	Unmodified	_MMQRWLESRAF_					0	0	0			REV__tr|A0A553SFF1|A0A553SFF1_NIACIGluconokinaseOS=NialliacirculansOX=1397GN=gntKPE=3SV=1	REV__tr|A0A553SFF1|A0A553SFF1_NIACIGluconokinaseOS=NialliacirculansOX=1397GN=gntKPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.23785400390625	3	485.572563	1453.69586	0.0006666	3.2368E-07	-3.089	-0.0014999	-3.0883	-0.0014996	485.5710536445595	57.508	3.9993	54.163	53.73	57.729	-3.3449					112	79	2	0	0	0	0.025908	1	3734	3734		34.087	2.4522	1	481900	+		38522	29571	31790	31813	41845	41845					-0.012840485120705125
MMRAKEIK	8	Unmodified	_MMRAKEIK_					0	0	0			REV__nc|ENSG00000156697|Q9BVJ6-3|UTP14A	REV__nc|ENSG00000156697|Q9BVJ6-3|UTP14A	MULTI-MSMS	OvCa9_classI_Rep2	2	503.77886962890625	2	503.780447	1005.54634	-3.0867	-0.001555	-0.36288	-0.00018281	-3.4496	-0.0017378	503.78006253314857	36.309	2.2758	33.6	32.75	35.026	-2.7097					126	45	4	0	0	0	0.73938	1	1546	1546		31.955	0	1	296190	+		38523	20493	31791	31814	41846	41846					0.043790509359837415
MMRDLVGPDK	10	Unmodified	_MMRDLVGPDK_					0	0	0			REV__ENSG00000163191|ENST00000271638|S100A11	REV__ENSG00000163191|ENST00000271638|S100A11	MULTI-MSMS	OvCa99_classI_Rep5	1	581.2903442382812	2	581.291376	1160.5682	0.90817	0.00052791	-2.2129	-0.0012863	-1.3047	-0.0007584	581.2898809713961	111.36	0.63031	111.36	111.11	111.74	0					31	13	3	0	0	0	0.40664	1	12655	12655		67.494	9.2637	1	400760	+		38524	20815	31792	31815	41847	41847					-0.005661891060981361
MMRDLVGPDK	10	Unmodified	_MMRDLVGPDK_					0	0	0			REV__ENSG00000163191|ENST00000271638|S100A11	REV__ENSG00000163191|ENST00000271638|S100A11	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	581.291376	1160.5682	0.90817	0.00052791	-2.2129	-0.0012863	-1.3047	-0.0007584	581.2898809713961	111.36	0.63031	111.36	111.11	111.74	0	0	0	NaN	67.494	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	400760	+		38525	20815	31792	31815							-0.005661891060981361
MMRFVTVN	8	Unmodified	_MMRFVTVN_					0	0	0		ENST00000230914.4_1_5:44815361-44815391:+|nuORF	ENST00000230914.4_1_5:44815361-44815391:+|nuORF	ENST00000230914.4_1_5:44815361-44815391:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.7900390625	2	499.251523	996.488493	1.3677	0.00068285	3.6662	0.0018304	5.034	0.0025132	499.2534019529465	112.01	0.41607	112.01	111.79	112.2	0					15	8	2	0	0	0	0.028476	1	12728	12728		67.494	0	1	76421			38526	9720	31793	31816	41848	41848					-0.009892109894394707
MMRLTLILN	9	Oxidation (M)	_MM(Oxidation (M))RLTLILN_		M(0.224)M(0.776)RLTLILN		M(-5.4)M(5.4)RLTLILN	0	0	1		ENSG00000198886|ENST00000361381|MT-ND4	ENSG00000198886|ENST00000361381|MT-ND4	ENSG00000198886|ENST00000361381|MT-ND4	MULTI-MSMS	OvCa99_classI_Rep5	1	560.8136596679688	2	560.814487	1119.61442	1.8448	0.0010346	-2.3836	-0.0013368	-0.53879	-0.00030216	560.8132755155216	146.19	1.6293	146.19	145.73	147.36	0					85	32	5	0	0	0	0.070405	1	17137	17137		107.01	13.812	2	1540700			38527	8899	31794	31817	41849	41849		269			0.05939875796002525
MMRSRWEY	8	Unmodified	_MMRSRWEY_					0	0	0			REV__ENSG00000106483|ENST00000436072|SFRP4	REV__ENSG00000106483|ENST00000436072|SFRP4	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.848388671875	2	579.762786	1157.51102	-1.2757	-0.00073963	3.0261	0.0017544	1.7503	0.0010148	579.7645158268301	28.03	0.8975	28.03	27.591	28.489	0					24	17	2	0	0	0	0.028476	1	917	917		11.511	0	1	10813	+		38528	17805	31795	31818	41850	41850					-0.061436115918013456
MMSEVDRCGDN	11	Unmodified	_MMSEVDRCGDN_					0	0	0		DAB2IP-SLC44A4|2|fusion;DAB2IP-SLC44A4|1|fusion;nc|ENSG00000136848|Q5VWQ8-4|DAB2IP;nc|ENSG00000136848|Q5VWQ8-2|DAB2IP;nc|ENSG00000136848|Q5VWQ8-5|DAB2IP;ENSG00000136848|ENST00000408936|DAB2IP;ENST00000459906.1_1_9:124522622-124526156:+|nuORF;nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	DAB2IP-SLC44A4|2|fusion	DAB2IP-SLC44A4|2|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	628.7369995117188	2	628.738847	1255.46314	-0.32523	-0.00020448	-2.8711	-0.0018052	-3.1963	-0.0020096	628.7372501800049	38.325	1.3947	38.325	38.069	39.463	0					81	30	5	0	0	0	0.70761	1	2182	2182		27.047	1.4733	1	3316400			38529	707	31796	31819	41851	41851					-0.15437098364827762
MMSQKLGSSTS	11	Unmodified	_MMSQKLGSSTS_					0	0	0			REV__CASP8AP2|p.E1578Dfs*44|1|0.06|ENSG00000118412|chr6:89868023-89868024|-/CCCTGTTC|frameshift_variant	REV__CASP8AP2|p.E1578Dfs*44|1|0.06|ENSG00000118412|chr6:89868023-89868024|-/CCCTGTTC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.8004760742188	2	578.770474	1155.52639	0.89573	0.00051842	-1.5977	-0.00092469	-0.70195	-0.00040627	578.7679711934582	144.98	0.29535	144.98	144.89	145.18	0					6	5	2	0	0	0	0.025594	1	16960	16960		33.922	1.1092	1	17574	+		38530	15742	31797	31820	41852	41852					-0.0451478958525513
MMTAANRVEY	10	Unmodified	_MMTAANRVEY_					0	0	0			REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.8206787109375	2	593.273183	1184.53181	2.7346	0.0016223	1.3535	0.00080302	4.0881	0.0024254	593.2739184020604	107.97	0.42561	107.97	107.69	108.11	0					15	9	2	0	0	0	0.026681	1	12180	12180		52.937	17.318	1	400190	+		38531	17448	31798	31821	41853	41853					-0.05307066002797001
MMTEEGLL	8	Oxidation (M)	_M(Oxidation (M))MTEEGLL_		M(0.85)M(0.15)TEEGLL		M(7.6)M(-7.6)TEEGLL	0	0	1			REV__ENST00000545913.5_1_12:120126039-120222037:-|nuORF	REV__ENST00000545913.5_1_12:120126039-120222037:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	470.2118835449219	2	470.211729	938.408905	0.22869	0.00010753	-1.3424	-0.00063119	-1.1137	-0.00052366	470.21095810442347	111.25	1.4293	111.11	110.73	112.16	-0.13961					80	28	4	0	0	0	0.66704	1	10493	10493		50.025	7.5501	2	321870	+		38532	27312	31799	31822	41854	41854		602;603			-0.06276322454073124
MMTEEGLL	8	Oxidation (M)	_M(Oxidation (M))MTEEGLL_		M(0.5)M(0.5)TEEGLL		M(0)M(0)TEEGLL	0	0	1			REV__ENST00000545913.5_1_12:120126039-120222037:-|nuORF	REV__ENST00000545913.5_1_12:120126039-120222037:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.2109069824219	2	470.211729	938.408905	0.76716	0.00036073	-2.1622	-0.0010167	-1.395	-0.00065596	470.21060850617636	112.48	1.7553	110.97	110.42	112.18	-1.5111					84	34	4	0	0	0	0.67745	1	10384	10384		47.916	7.343	2	831100	+		38533	27312	31799	31822	41855	41855		602;603			-0.06276322454073124
MMTRISSQF	9	Unmodified	_MMTRISSQF_					0	0	0		ENSG00000013503|ENST00000228347|POLR3B;nc|ENSG00000013503|Q9NW08-2|POLR3B;POLR3B|p.L708Tfs*13|1|0.06|ENSG00000013503|chr12:106454510-106454511|-/GATACAACCAGCGAAACAGAATT|frameshift_variant	ENSG00000013503|ENST00000228347|POLR3B	ENSG00000013503|ENST00000228347|POLR3B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.783203125	2	550.764994	1099.51544	-1.1205	-0.00061714	0.4746	0.0002614	-0.64592	-0.00035575	550.7650551878572	42.906	0.2621	39.899	39.748	40.01	-3.0074					6	4	2	0	0	0	0.027462	1	2030	2030		26.693	0	1	7301.3			38534	987	31800	31823	41856	41856					-0.030341471689098398
MMTVMMCAFW	10	Unmodified	_MMTVMMCAFW_					0	0	0			REV__tr|A0A553SQA9|A0A553SQA9_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_22530PE=3SV=1	REV__tr|A0A553SQA9|A0A553SQA9_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_22530PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	625.7467041015625	2	625.748587	1249.48262	0.51839	0.00032438	-4.3495	-0.0027217	-3.8311	-0.0023973	625.7455997038284	114.26	0.54554	114.26	114.01	114.56	0					23	11	3	0	0	0	0.64063	1	13031	13031		37.159	4.4086	1	382730	+		38535	30619	31801	31824	41857	41857					-0.13214136879287253
MMVALVGYNTI	11	Unmodified	_MMVALVGYNTI_					0	0	0		ADCY2|p.N875Tfs*35|1|0.17|ENSG00000078295|chr5:7789793-7789794|-/AACTAATTTAC|frameshift_variant;ENSG00000078295|ENST00000338316|ADCY2;nc|ENSG00000078295|Q08462-2|ADCY2	ADCY2|p.N875Tfs*35|1|0.17|ENSG00000078295|chr5:7789793-7789794|-/AACTAATTTAC|frameshift_variant	ADCY2|p.N875Tfs*35|1|0.17|ENSG00000078295|chr5:7789793-7789794|-/AACTAATTTAC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	606.3143920898438	2	606.311777	1210.609	3.0243	0.0018337	3.4919	0.0021172	6.5162	0.0039508	606.3138243429273	89.552	1.592	89.552	88.677	90.269	0					87	38	3	0	0	0	0.68399	1	9606	9606		35.152	2.3396	1	1328000			38536	33	31802	31825	41858	41858					0.012121522135203122
MMVRPPEVDD	10	Unmodified	_MMVRPPEVDD_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.9931640625	2	594.773016	1187.53148	0.10843	6.4492E-05	-0.0034523	-2.0533E-06	0.10498	6.2439E-05	595.274536386407	68.963	0.53461	68.963	68.733	69.268	0					27	12	3	0	0	0	0.026891	1	6569	6569		31.53	3.6476	1	604820	+		38537	28942	31803	31826	41859	41859					-0.054784857226650274
MMVTAVFLW	9	Oxidation (M)	_MM(Oxidation (M))VTAVFLW_		M(0.019)M(0.981)VTAVFLW		M(-17)M(17)VTAVFLW	0	0	1			REV__nc|ENSG00000115677|Q00341-2|HDLBP	REV__nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-MSMS	OvCa99_classI_Rep5	1	557.2747192382812	2	557.277206	1112.53986	0.007357	4.0999E-06	-3.6719	-0.0020462	-3.6645	-0.0020421	557.2749767048673	47.66	0.69199	47.66	47.336	48.028	0					36	15	3	0	0	0	0.34496	1	3440	3440		57.811	10.154	2	1256000	+		38538	28810	31804	31827	41860	41860		634			-0.011908870153774842
MMVTAVFLW	9	Oxidation (M)	_MM(Oxidation (M))VTAVFLW_					0	0	1			REV__nc|ENSG00000115677|Q00341-2|HDLBP	REV__nc|ENSG00000115677|Q00341-2|HDLBP	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	557.277206	1112.53986	0.007357	4.0999E-06	-3.6719	-0.0020462	-3.6645	-0.0020421	557.2749767048673	47.66	0.69199	47.66	47.336	48.028	0	0	0	NaN	57.811	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1256000	+		38539	28810	31804	31827				634			-0.011908870153774842
MMVYPGLYKN	10	Unmodified	_MMVYPGLYKN_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1;REV__nc|ENSG00000083067|Q9HCF6-10|TRPM3	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MULTI-SECPEP	OvCa9_classI_Rep2	2	406.21575927734375	3	405.868205	1214.58279	0.43144	0.00017511	-3.3425	-0.0013566	-2.9111	-0.0011815	405.8666348183328	60.32	1.9379	57.55	56.933	58.871	-2.7702					63	36	2	0	0	0	0.027021	1	4525	4525		27.047	0	1	15611	+		38540	19179;17093	31805	31828	41861	41861					-0.015921169579542038
MNAALVIIFA	10	Unmodified	_MNAALVIIFA_					0	0	0		tr|A0A553SMH0|A0A553SMH0_NIACISodium:solutesymporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_22430PE=3SV=1	tr|A0A553SMH0|A0A553SMH0_NIACISodium:solutesymporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_22430PE=3SV=1	tr|A0A553SMH0|A0A553SMH0_NIACISodium:solutesymporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_22430PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.2835083007812	2	531.804445	1061.59434	-2.8909	-0.0015374	0.84741	0.00045066	-2.0435	-0.0010867	532.3078856251791	104.12	0.16933	104.12	103.98	104.15	0					5	3	2	0	0	0	0.026768	1	11645	11645		31.955	8.9124	1	45669			38541	33832	31806	31829	41862	41862					0.06600448127665004
MNALFFFF	8	Unmodified	_MNALFFFF_					0	0	0			REV__ENST00000254846.9_1_17:7756835-7757354:+|nuORF	REV__ENST00000254846.9_1_17:7756835-7757354:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.2957763671875	2	518.751682	1035.48881	-1.0067	-0.0005222	0.54817	0.00028436	-0.45848	-0.00023784	519.2524678505315	93.193	0.39733	91.231	91.079	91.476	-1.9617					10	7	2	0	0	0	0.028476	1	5962	5962		44.531	0	1	37907	+		38542	23881	31807	31830	41863	41863					-0.027514679979503853
MNASTPRFLF	10	Oxidation (M)	_M(Oxidation (M))NASTPRFLF_		M(1)NASTPRFLF		M(64)NASTPRFLF	0	0	1			REV__ENSG00000123572|ENST00000243300|NRK	REV__ENSG00000123572|ENST00000243300|NRK	MULTI-MSMS	OvCa9_classI_Rep2	2	600.2979736328125	2	600.297516	1198.58048	0.42593	0.00025569	1.9611	0.0011772	2.387	0.0014329	600.2986444844016	66.04	1.7869	63.345	62.872	64.659	-2.6958					108	35	5	0	0	0	0.43433	1	5094	5094		63.534	10.445	1	817990	+		38543	18649	31808	31831	41864	41864		430			-0.010868293714338506
MNDLFILNN	9	Unmodified	_MNDLFILNN_					0	0	0			REV__ENST00000373840.8_1_9:123942250-123942298:-|nuORF	REV__ENST00000373840.8_1_9:123942250-123942298:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.3471069335938	2	547.270967	1092.52738	2.6236	0.0014358	-2.3804	-0.0013027	0.24326	0.00013313	547.2688215398782	89.414	0.71851	89.414	89.004	89.722	0					24	17	2	0	0	0	0.027452	1	9500	9500		33.922	3.6039	1	452020	+		38544	25050	31809	31832	41865	41865					-0.015182071540948527
MNDPFSLTL	9	Unmodified	_MNDPFSLTL_					0	0	0			REV__ENST00000422108.5_1_3:185677803-185686347:+|nuORF	REV__ENST00000422108.5_1_3:185677803-185686347:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.2858276367188	2	519.252243	1036.48993	1.4038	0.0007289	-0.2049	-0.0001064	1.1989	0.00062251	519.2519056317136	91.668	1.9578	90.433	88.946	90.904	-1.2355					49	37	2	0	0	0	0.027461	1	8122	8122		25.574	4.6271	1	22666	+		38545	25616	31810	31833	41866	41866					-0.02685298419692117
MNDSIWHE	8	Unmodified	_MNDSIWHE_					0	0	0			REV__ENSG00000139174|ENST00000345127|PRICKLE1	REV__ENSG00000139174|ENST00000345127|PRICKLE1	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.7747802734375	2	516.216192	1030.41783	0.47347	0.00024441	-0.2829	-0.00014604	0.19057	9.8375E-05	516.2160311121387	109.12	0.9962	107.92	107.56	108.56	-1.1978					34	18	3	0	0	0	0.028476	1	7820	7820		33.516	0	1	32516	+		38546	19594	31811	31834	41867	41867					-0.09616212773403277
MNEQDSAA	8	Unmodified	_MNEQDSAA_					0	0	0			REV__nc|ENSG00000140451|Q9H611-4|PIF1	REV__nc|ENSG00000140451|Q9H611-4|PIF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	433.2491760253906	2	433.17145	864.328346	0.15609	6.7614E-05	-0.44443	-0.00019252	-0.28834	-0.0001249	433.1716847439676	55.03	13.287	51.782	45.26	58.546	-3.2474					408	262	3	0	0	0	0.028476	1	3087	3087		42.396	0	1	88463	+		38547	19673	31812	31835	41868	41868					-0.10924467452787212
MNETVTGNIK	10	Unmodified	_MNETVTGNIK_					0	0	0			REV__nc|ENSG00000104067|Q07157-2|TJP1;REV__nc|ENSG00000119139|Q9UDY2-5|TJP2	REV__nc|ENSG00000104067|Q07157-2|TJP1	MULTI-MSMS	OvCa99_classI_Rep5	1	553.7744140625	2	553.779156	1105.54376	1.1687	0.0006472	-4.1276	-0.0022858	-2.9589	-0.0016386	553.7768587031202	109.61	0.80582	109.61	109.33	110.13	0					37	17	3	0	0	0	0.28422	1	12409	12409		82.75	4.4867	1	1968300	+		38548	17643;28814	31813	31836	41869	41869					-0.004791259879766585
MNFANDKLT	9	Unmodified	_MNFANDKLT_					0	0	0			REV__ENSG00000130150|ENST00000380492|MOSPD2	REV__ENSG00000130150|ENST00000380492|MOSPD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2922973632812	2	527.255317	1052.49608	2.6316	0.0013875	-0.37962	-0.00020016	2.252	0.0011874	527.2549944404266	88.728	0.37579	88.728	88.508	88.883	0					13	8	2	0	0	0	0.027462	1	9446	9446		10.265	0	1	371210	+		38549	18922	31814	31837	41870	41870					-0.028067801881888954
MNFGNVAFLA	10	Unmodified	_MNFGNVAFLA_					0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	MULTI-MSMS	OvCa99_classI_Rep5	1	542.2728881835938	2	542.268227	1082.5219	1.4744	0.00079953	-2.7862	-0.0015108	-1.3117	-0.00071131	542.2666107922153	112.08	1.1368	112.08	111.74	112.88	0					63	24	5	0	0	0	0.5675	1	12793	12793		45.972	0.020292	1	3525800	+		38550	19028	31815	31838	41871	41871					-0.016058859458780717
MNGRKIMGK	9	Unmodified	_MNGRKIMGK_					0	0	0		nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1;nc|ENSG00000116001|P31483-3|TIA1;ENST00000496452.5_1_2:70456348-70475673:-|nuORF;ENST00000481650.1_1_2:70456348-70475673:-|nuORF	nc|ENSG00000116001|P31483-2|TIA1	nc|ENSG00000116001|P31483-2|TIA1	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.2615356445312	2	517.783521	1033.55249	-0.72155	-0.00037361	2.9588	0.001532	2.2372	0.0011584	517.7847011969378	55.825	0.44469	53.021	52.78	53.225	-2.804					12	8	2	0	0	0	0.027462	1	3924	3924		24.203	1.1603	1	16389			38551	3147	31816	31839	41872	41872					0.037055691675050184
MNGTTYSFST	10	Unmodified	_MNGTTYSFST_					0	0	0		tr|A0A553SFP3|A0A553SFP3_NIACIDUF2929familyproteinOS=NialliacirculansOX=1397GN=CEQ21_09155PE=4SV=1	tr|A0A553SFP3|A0A553SFP3_NIACIDUF2929familyproteinOS=NialliacirculansOX=1397GN=CEQ21_09155PE=4SV=1	tr|A0A553SFP3|A0A553SFP3_NIACIDUF2929familyproteinOS=NialliacirculansOX=1397GN=CEQ21_09155PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.29541015625	2	554.734414	1107.45428	1.6876	0.00093615	0.77652	0.00043076	2.4641	0.0013669	554.7344601686667	148.56	0.44458	148.56	148.37	148.82	0					9	8	2	0	0	0	0.026956	1	17374	17374		19.997	6.5427	1	37143			38552	33060	31817	31840	41873	41873					-0.09515380667357931
MNHKLIRQVV	10	Unmodified	_MNHKLIRQVV_					0	0	0			REV__nc|ENSG00000153815|Q8IY22-3|CMIP	REV__nc|ENSG00000153815|Q8IY22-3|CMIP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	412.5704345703125	3	413.244775	1236.7125	0.20563	8.4976E-05	3.5165	0.0014532	3.7222	0.0015382	413.2461455338614	20.337	0.72635	18.998	18.729	19.456	-1.3386					34	14	4	0	0	0	0.027214	1	21	21		7.0187	0	1	24429	+		38553	20347	31818	31841	41874	41874					0.10360820436176255
MNHSERFV	8	Unmodified	_MNHSERFV_					0	0	0		ENST00000485609.5_1_1:169279303-169336948:-|nuORF;NME7|p.K122Nfs*4|1|0.19|ENSG00000143156|chr1:169309996-169309996|G/-|frameshift_variant;ENST00000527460.1_1_1:169272381-169336948:-|nuORF;ENST00000524967.5_1_1:169256457-169336948:-|nuORF;ENSG00000143156|ENST00000367811|NME7	ENST00000485609.5_1_1:169279303-169336948:-|nuORF	ENST00000485609.5_1_1:169279303-169336948:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.7613220214844	2	510.240001	1018.46545	0.11731	5.9856E-05	-2.1167	-0.00108	-1.9994	-0.0010202	510.2389218015845	31.931	0.29798	31.931	31.757	32.055	0					8	5	2	0	0	0	0.028476	1	1337	1337		25.45	8.0852	1	20502			38554	5015	31819	31842	41875	41875					-0.04304513782551567
MNIELVPP	8	Unmodified	_MNIELVPP_					0	0	0		nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000136518|ENST00000429709|ACTL6A	nc|ENSG00000136518|O96019-2|ACTL6A	nc|ENSG00000136518|O96019-2|ACTL6A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	455.7568664550781	2	456.746596	911.478639	-0.56995	-0.00026032	-2.561	-0.0011697	-3.1309	-0.00143	456.74466223551684	51.133	0.70087	47.96	47.771	48.472	-3.1734					16	13	2	0	0	0	0.028476	1	3022	3022		37.159	14.117	1	12601			38555	4492	31820	31843	41876	41876					0.019359242768246077
MNIILPLV	8	Unmodified	_MNIILPLV_					0	0	0		ENST00000526319.5_1_11:64892022-64893052:+|nuORF	ENST00000526319.5_1_11:64892022-64893052:+|nuORF	ENST00000526319.5_1_11:64892022-64893052:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.7680969238281	2	456.782982	911.55141	-0.39986	-0.00018265	-1.7345	-0.00079231	-2.1344	-0.00097496	456.7822434255962	67.952	0.35483	67.952	67.723	68.077	0					14	8	2	0	0	0	0.028476	1	6394	6394		19.36	1.0356	1	385910			38556	13212	31821	31844	41877	41877					0.09209678070260452
MNIILPLV	8	Unmodified	_MNIILPLV_					0	0	0		ENST00000526319.5_1_11:64892022-64893052:+|nuORF	ENST00000526319.5_1_11:64892022-64893052:+|nuORF	ENST00000526319.5_1_11:64892022-64893052:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	456.782982	911.55141	-0.66664	-0.00030451	-7.5794	-0.0034622	-8.2461	-0.0037667	456.7789396624927	71.242	0.39131	67.786	67.533	67.924	-3.4563	-0.083124	-0.0020213	NaN	12.207	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20704			38557	13212	31821	31844							0.09209678070260452
MNIMLMQPW	9	Oxidation (M)	_M(Oxidation (M))NIMLMQPW_		M(0.999)NIM(0.001)LM(0.001)QPW		M(32)NIM(-32)LM(-32)QPW	0	0	1		ENST00000229214.8_1_12:75900671-75902061:-|nuORF	ENST00000229214.8_1_12:75900671-75902061:-|nuORF	ENST00000229214.8_1_12:75900671-75902061:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	590.267333984375	2	590.271598	1178.52864	-7.7051	-0.0045481	2.7898	0.0016467	-4.9153	-0.0029013	590.2732006658329	159.89	2.9332	158.56	157.96	160.89	-1.3316					148	58	4	0	0	0	0.52083	1	13896	13896		40.573	7.057	3	239760			38558	9716	31822	31845	41878	41878		286			-0.053480323811754715
MNIMLMQPW	9	Oxidation (M)	_M(Oxidation (M))NIMLMQPW_		M(0.99)NIM(0.005)LM(0.005)QPW		M(23)NIM(-23)LM(-23)QPW	0	0	1		ENST00000229214.8_1_12:75900671-75902061:-|nuORF	ENST00000229214.8_1_12:75900671-75902061:-|nuORF	ENST00000229214.8_1_12:75900671-75902061:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	590.2684936523438	2	590.271598	1178.52864	-6.4648	-0.003816	1.5695	0.00092645	-4.8953	-0.0028895	590.272448811586	160.41	2.659	158.8	158.24	160.9	-1.6101					174	63	4	0	0	0	0.50066	1	15942	15942		42.474	6.0277	3	264810			38559	9716	31822	31845	41879	41879		286			-0.053480323811754715
MNINLMVEK	9	Unmodified	_MNINLMVEK_					0	0	0			REV__tr|A0A7D7A2N6|A0A7D7A2N6_9CLOTTniQfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20760PE=4SV=1	REV__tr|A0A7D7A2N6|A0A7D7A2N6_9CLOTTniQfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20760PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	545.7982788085938	2	546.28302	1090.55149	0.35474	0.00019379	1.8775	0.0010257	2.2322	0.0012194	546.2839583151655	132.48	1.5713	132.25	131.59	133.16	-0.22696					61	31	3	0	0	0	0.026813	1	13174	13174		110.12	0	1	132410	+		38560	32548	31823	31846	41880	41880					0.009833100079276846
MNIPVKDIPK	10	Unmodified	_MNIPVKDIPK_					0	0	0		tr|A0A553SJ14|A0A553SJ14_NIACIUvrABCsystemproteinAOS=NialliacirculansOX=1397GN=uvrAPE=3SV=1	tr|A0A553SJ14|A0A553SJ14_NIACIUvrABCsystemproteinAOS=NialliacirculansOX=1397GN=uvrAPE=3SV=1	tr|A0A553SJ14|A0A553SJ14_NIACIUvrABCsystemproteinAOS=NialliacirculansOX=1397GN=uvrAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.7805786132812	2	577.833734	1153.65292	1.1964	0.00069131	-1.786	-0.001032	-0.58962	-0.0003407	577.8327368197	119.73	0.43001	119.73	119.62	120.05	0					15	9	3	0	0	0	0.026522	1	13764	13764		56.434	0	1	135650			38561	33453	31824	31847	41881	41881					0.08223504702141327
MNIVDVPIN	9	Unmodified	_MNIVDVPIN_					0	0	0			REV__tr|A0A7D6VZM9|A0A7D6VZM9_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_20340PE=4SV=1	REV__tr|A0A7D6VZM9|A0A7D6VZM9_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_20340PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.3077697753906	2	507.76806	1013.52157	-0.83924	-0.00042614	1.2378	0.00062852	0.39858	0.00020239	507.7682532389576	97.886	1.5203	96.126	95.414	96.934	-1.7595					75	29	4	0	0	0	0.02704	1	6456	6456		112.41	30.17	1	164000	+		38562	31842	31825	31848	41882	41882					0.015346943342592567
MNIVHKAS	8	Unmodified	_MNIVHKAS_					0	0	0			REV__ENST00000392357.1_1_17:80012338-80013241:+|nuORF	REV__ENST00000392357.1_1_17:80012338-80013241:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	449.75201416015625	2	450.242012	898.469472	-0.12543	-5.6472E-05	3.598	0.0016199	3.4725	0.0015635	450.243557646782	144.85	0.84393	143.42	143.1	143.94	-1.4357					24	15	2	0	0	0	0.028476	1	14171	14171		20.482	10.217	1	41073	+		38563	25255	31826	31849	41883	41883					0.0161757571115686
MNIVHKAS	8	Unmodified	_MNIVHKAS_					0	0	0			REV__ENST00000392357.1_1_17:80012338-80013241:+|nuORF	REV__ENST00000392357.1_1_17:80012338-80013241:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	450.242012	898.469472	0.61091	0.00027506	2.8564	0.0012861	3.4673	0.0015611	450.24324566294655	144.07	0.83875	143.85	143.35	144.19	-0.22696	0.26793	-0.0014422	NaN	13.775	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15327	+		38564	25255	31826	31849							0.0161757571115686
MNIVHKAS	8	Unmodified	_MNIVHKAS_					0	0	0			REV__ENST00000392357.1_1_17:80012338-80013241:+|nuORF	REV__ENST00000392357.1_1_17:80012338-80013241:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	450.242012	898.469472	-2.9089	-0.0013097	6.5911	0.0029676	3.6822	0.0016579	450.24491480365134	144.44	0.74142	143.47	143.2	143.94	-0.97301	-0.10911	0.0019208	NaN	13.775	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30698	+		38565	25255	31826	31849							0.0161757571115686
MNKAQEQHS	9	Unmodified	_MNKAQEQHS_					0	0	0			REV__tr|A0A7D6VTE5|A0A7D6VTE5_9CLOTPTSsugartransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_07650PE=4SV=1	REV__tr|A0A7D6VTE5|A0A7D6VTE5_9CLOTPTSsugartransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_07650PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3062133789062	2	536.745647	1071.47674	1.4049	0.00075406	-3.6114	-0.0019384	-2.2066	-0.0011844	536.7437296941232	111.24	0.58311	111.24	111.07	111.65	0					16	12	2	0	0	0	0.027462	1	12664	12664		25.574	0	1	104870	+		38566	31599	31827	31850	41884	41884					-0.05613736479062936
MNKRGDTK	8	Unmodified	_MNKRGDTK_					0	0	0			REV__ENST00000511208.2_1_5:31532460-31535865:+|nuORF	REV__ENST00000511208.2_1_5:31532460-31535865:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.7984313964844	2	475.247826	948.481099	-1.1972	-0.00056897	-2.9676	-0.0014104	-4.1648	-0.0019793	475.2463444251856	54.847	0.79984	52.033	51.822	52.622	-2.8139					25	15	2	0	0	0	0.028476	1	3850	3850		40.778	0	1	58790	+		38567	26956	31828	31851	41885	41885					0.004797727344907798
MNKVAELIQ	9	Unmodified	_MNKVAELIQ_					0	0	0			REV__tr|A0A553SHC1|A0A553SHC1_NIACILargeribosomalsubunitproteinbL12OS=NialliacirculansOX=1397GN=rplLPE=3SV=1	REV__tr|A0A553SHC1|A0A553SHC1_NIACILargeribosomalsubunitproteinbL12OS=NialliacirculansOX=1397GN=rplLPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8106689453125	2	523.289159	1044.56377	0.10528	5.5094E-05	-1.8147	-0.00094964	-1.7095	-0.00089454	523.2883007449414	45.62	0.61491	45.62	45.454	46.069	0					29	13	3	0	0	0	0.027438	1	3163	3163		65.465	21.088	1	302750	+		38568	29788	31829	31852	41886	41886					0.043266697426361134
MNLHVVPKELY	11	Unmodified	_MNLHVVPKELY_					0	0	0			REV__ASNSD1|p.P243H|1|0.1|ENSG00000138381|chr2:189666860-189666860|C/A|missense_variant	REV__ASNSD1|p.P243H|1|0.1|ENSG00000138381|chr2:189666860-189666860|C/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	448.9252624511719	3	448.244441	1341.71149	4.105	0.0018401	3.8221	0.0017132	7.9272	0.0035533	448.24620630548105	28.757	0.35254	26.047	25.906	26.259	-2.7097					10	7	2	0	0	0	0.026364	1	618	618		18.531	5.0231	1	11010	+		38569	15670	31830	31853	41887	41887					0.054305612766484046
MNLKIKGMLKN	11	Unmodified	_MNLKIKGMLKN_					0	0	0			REV__ENST00000520073.5_1_8:37620150-37623956:+|nuORF	REV__ENST00000520073.5_1_8:37620150-37623956:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	429.7637634277344	3	430.585921	1288.73593	0.7089	0.00030524	2.56	0.0011023	3.2689	0.0014075	430.5867809458078	102.68	0.52602	100.48	100.2	100.73	-2.1994					12	9	2	0	0	0	0.025864	1	9250	9250		28.577	0	1	7671.4	+		38570	27051	31831	31854	41888	41888					0.10311498158489485
MNLVEIISH	9	Unmodified	_MNLVEIISH_					0	0	0			REV__ENSG00000204510|ENST00000697200|PRAMEF7	REV__ENSG00000204510|ENST00000697200|PRAMEF7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.833251953125	2	528.281334	1054.54812	-0.97908	-0.00051723	-1.3271	-0.00070108	-2.3062	-0.0012183	528.2796742908666	105.62	0.75723	103.6	103.4	104.16	-2.0161					19	14	2	0	0	0	0.027433	1	9592	9592		37.812	0	1	12666	+		38571	22284	31832	31855	41889	41889					0.023023832256058085
MNLVVDIIV	9	Unmodified	_MNLVVDIIV_					0	0	0			REV__tr|A0A7D6ZYP8|A0A7D6ZYP8_9CLOTChromatetransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_03450PE=3SV=1	REV__tr|A0A7D6ZYP8|A0A7D6ZYP8_9CLOTChromatetransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_03450PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.2968444824219	2	508.296453	1014.57835	0.56082	0.00028506	1.2912	0.00065631	1.852	0.00094138	508.2969585173289	45.601	1.7481	45.601	45.373	47.121	0					89	39	5	0	0	0	0.10363	2	3152	3152;3172		96.19	13.885	1	25234000	+		38572	32384	31833	31856	41890;41891	41890					0.07164741890790083
MNPKICRVF	9	Unmodified	_MNPKICRVF_					0	0	0			REV__ENSG00000145555|ENST00000513610|MYO10	REV__ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	OvCa99_classI_Rep5	1	554.29541015625	2	554.293722	1106.57289	1.6129	0.00089404	2.7438	0.0015209	4.3568	0.0024149	554.2952177535844	148.27	0.59065	148.27	148.03	148.62	0					18	11	2	0	0	0	0.53957	1	17374	17374		38.806	4.6336	1	164080	+		38573	19968	31834	31857	41892	41892					0.023867398273296203
MNPLTKVKLI	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MNPLTKVKLI_					1	0	0		ENSG00000134597|ENST00000305536|RBMX2	ENSG00000134597|ENST00000305536|RBMX2	ENSG00000134597|ENST00000305536|RBMX2	MULTI-MSMS	OvCa9_classI_Rep2	2	400.2471923828125	3	400.245782	1197.71552	0.81341	0.00032556	2.4746	0.00099045	3.288	0.001316	400.24675032608036	56.071	2.0809	53.267	52.83	54.911	-2.804					98	41	3	0	0	0	0.48398	1	3933	3933		56.434	7.8322	1	943420			38574	4312	31835	31858	41893	41893					0.12456650770354827
MNRQLLSTL	9	Unmodified	_MNRQLLSTL_					0	0	0			REV__ENST00000544576.1_1_8:145297127-145303835:+|nuORF	REV__ENST00000544576.1_1_8:145297127-145303835:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3062133789062	2	538.300059	1074.58556	1.355	0.00072941	-4.0738	-0.0021929	-2.7187	-0.0014635	538.2959639870887	111.43	0.80658	111.43	110.89	111.7	0					20	17	2	0	0	0	0.027462	1	12664	12664		20.947	0	1	65609	+		38575	22141	31836	31859	41894	41894					0.05125474491228488
MNSFFQQL	8	Unmodified	_MNSFFQQL_					0	0	0			REV__ENSG00000172901|ENST00000357872|LVRN	REV__ENSG00000172901|ENST00000357872|LVRN	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.74334716796875	2	507.739302	1013.46405	1.2326	0.00062585	-1.5129	-0.00076817	-0.2803	-0.00014232	508.24084896308403	98.354	0.25523	98.354	98.121	98.376	0					8	5	2	0	0	0	0.028476	1	10828	10828		16.473	0	1	106080	+		38576	21735	31837	31860	41895	41895					-0.042141478713119795
MNTILFTVD	9	Unmodified	_MNTILFTVD_					0	0	0			REV__ENSG00000214097|ENST00000397537|SMCO1	REV__ENSG00000214097|ENST00000397537|SMCO1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2922973632812	2	527.267893	1052.52123	2.7789	0.0014652	2.1795	0.0011492	4.9583	0.0026144	527.2689786710558	88.865	0.87823	88.865	88.044	88.922	0					42	20	3	0	0	0	0.027462	1	9446	9446		14.865	0	1	319160	+		38577	23283	31838	31861	41896	41896					-0.002927253855887102
MNWAMLWAL	9	Unmodified	_MNWAMLWAL_					0	0	0			REV__sp|P09721|US12_HCMVAUncharacterizedproteinHVLF6OS=Humancytomegalovirus(strainAD169)OX=10360GN=US12PE=3SV=1	REV__sp|P09721|US12_HCMVAUncharacterizedproteinHVLF6OS=Humancytomegalovirus(strainAD169)OX=10360GN=US12PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	568.3124389648438	2	568.274998	1134.53544	0.0058999	3.3528E-06	-0.62691	-0.00035626	-0.62101	-0.00035291	568.2746673962854	89.11	0.48669	86.508	86.286	86.773	-2.6027					14	9	2	0	0	0	0.027462	1	7612	7612		19.36	2.8868	1	55049	+		38578	29406	31839	31862	41897	41897					-0.026443514383117872
MNYSNEND	8	Unmodified	_MNYSNEND_					0	0	0		ENST00000503745.1_1_4:99273670-99308609:+|nuORF;ENST00000505378.5_1_4:99182716-99313239:+|nuORF;ENST00000507303.5_1_4:99182716-99313239:+|nuORF;nc|ENSG00000138698|P52306-4|RAP1GDS1;ENSG00000138698|ENST00000408927|RAP1GDS1;nc|ENSG00000138698|P52306-5|RAP1GDS1	ENST00000503745.1_1_4:99273670-99308609:+|nuORF	ENST00000503745.1_1_4:99273670-99308609:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.6969909667969	2	493.679639	985.344725	0.36628	0.00018082	1.9769	0.00097597	2.3432	0.0011568	493.6811578518571	45.552	0.51094	45.552	45.289	45.8	0					20	11	3	0	0	0	0.028476	1	3131	3131		16.473	1.809	1	269980			38579	4715	31840	31863	41898	41898					-0.1485338628668842
MPAALAWNY	9	Unmodified	_MPAALAWNY_					0	0	0			REV__ENSG00000101577|ENST00000677752|LPIN2	REV__ENSG00000101577|ENST00000677752|LPIN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.2830200195312	2	518.74967	1035.48479	0.42126	0.00021853	1.35	0.00070033	1.7713	0.00091886	518.7505519937712	152.78	0.52646	152.78	152.62	153.15	0					12	11	2	0	0	0	0.027462	1	17879	17879		25.45	10.786	1	25733	+		38580	17506	31841	31864	41899	41899					-0.03153557491646097
MPAAMYRLL	9	Unmodified	_MPAAMYRLL_					0	0	0		ENSG00000107282|ENST00000265381|APBA1;nc|ENSG00000107282|Q02410-2|APBA1	ENSG00000107282|ENST00000265381|APBA1	ENSG00000107282|ENST00000265381|APBA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.3430786132812	2	533.282823	1064.55109	2.6113	0.0013925	-3.5118	-0.0018728	-0.90048	-0.00048021	533.280919443483	107.96	0.42348	107.96	107.82	108.24	0					19	9	3	0	0	0	0.027326	1	12218	12218		76.847	0	1	668780			38581	2598	31842	31865	41900	41900					0.021399350787305593
MPAIKKVTP	9	Oxidation (M)	_M(Oxidation (M))PAIKKVTP_		M(1)PAIKKVTP		M(72)PAIKKVTP	0	0	1			REV__ENSG00000011007|ENST00000613537|ELOA	REV__ENSG00000011007|ENST00000613537|ELOA	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.794921875	2	500.79662	999.578688	0.3476	0.00017408	-4.239	-0.0021229	-3.8914	-0.0019488	500.79446400604274	110.01	4.1489	108.41	107.65	111.8	-1.6011					189	79	5	0	0	0	0.22621	1	10094	10094		71.877	8.5712	1	2535700	+		38582	16483	31843	31866	41901	41901		392			0.07888161610640054
MPALSLNND	9	Unmodified	_MPALSLNND_					0	0	0		nc|ENSG00000133863|Q9BXT5|TEX15;ENSG00000133863|ENST00000643185|TEX15	nc|ENSG00000133863|Q9BXT5|TEX15	nc|ENSG00000133863|Q9BXT5|TEX15	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.270751953125	2	487.734217	973.453881	0.84332	0.00041132	1.914	0.00093355	2.7574	0.0013449	487.7350428341928	81.366	1.6929	81.366	80.571	82.264	0					73	40	3	0	0	0	0.027453	1	8510	8510		45.972	13.16	1	656600			38583	4241	31844	31867	41902	41902					-0.033907555965583924
MPAPGNLLVK	10	Unmodified	_MPAPGNLLVK_					0	0	0		CAMKK1|p.S475P|1|0.05|ENSG00000004660|chr17:3865930-3865930|A/G|missense_variant	CAMKK1|p.S475P|1|0.05|ENSG00000004660|chr17:3865930-3865930|A/G|missense_variant	CAMKK1|p.S475P|1|0.05|ENSG00000004660|chr17:3865930-3865930|A/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.2996826171875	2	520.30207	1038.58959	-0.72353	-0.00037645	4.347	0.0022618	3.6235	0.0018853	520.3042654486015	49.703	1.1906	46.942	46.572	47.763	-2.7603					39	23	2	0	0	0	0.026752	1	3171	3171		14.865	0	1	234960			38584	180	31845	31868	41903	41903					0.07183563984926877
MPDMGFLKV	9	Oxidation (M)	_MPDM(Oxidation (M))GFLKV_		M(0.047)PDM(0.953)GFLKV		M(-13)PDM(13)GFLKV	0	0	1			REV__ENST00000475303.1_1_22:19748720-19750866:+|nuORF	REV__ENST00000475303.1_1_22:19748720-19750866:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	527.2615356445312	2	527.259013	1052.50347	-0.070225	-3.7027E-05	3.7485	0.0019764	3.6783	0.0019394	527.2609378955284	106.61	1.4567	105.34	104.96	106.41	-1.267					71	28	4	0	0	0	0.27001	1	7544	7544		66.429	7.6473	2	624930	+		38585	22401	31846	31869	41904	41904		517			-0.020677639121004177
MPEGRSHCAC	10	2 Carbamidomethyl (C)	_MPEGRSHC(Carbamidomethyl (C))AC(Carbamidomethyl (C))_	MPEGRSHC(1)AC(1)		MPEGRSHC(43)AC(43)		0	2	0		nc|ENSG00000073737|Q9BPW9-4|DHRS9	nc|ENSG00000073737|Q9BPW9-4|DHRS9	nc|ENSG00000073737|Q9BPW9-4|DHRS9	MULTI-MSMS	OvCa99_classI_Rep5	1	602.7374267578125	2	602.736442	1203.45833	0.35689	0.00021511	-1.6157	-0.00097382	-1.2588	-0.00075871	602.7353117263589	57.376	1.3946	57.376	57.093	58.488	0					70	32	3	0	0	0	0.59317	1	4818	4818		42.864	7.7122	1	3226100			38586	14890	31847	31870	41905	41905	170;171				-0.13525937716917724
MPEPAQRWLV	10	Unmodified	_MPEPAQRWLV_					0	0	0		ENSG00000139874|ENST00000267377|SSTR1;SSTR1|p.F296Lfs*9|1|0.76|ENSG00000139874|chr14:38210275-38210275|T/-|frameshift_variant	ENSG00000139874|ENST00000267377|SSTR1	ENSG00000139874|ENST00000267377|SSTR1	MULTI-MSMS	OvCa99_classI_Rep5	1	613.82421875	2	613.821158	1225.62776	1.9793	0.001215	0.22323	0.00013702	2.2026	0.001352	613.8211310976798	83.462	8.351	83.462	82.264	90.615	0					423	201	4	0	0	0	0.61634	1	9270	9270		20.947	0	1	13312000			38587	4808	31848	31871	41906	41906					0.023974498995585236
MPESSPPPWSP	11	Unmodified	_MPESSPPPWSP_					0	0	0		ENST00000436545.5_1_17:41116178-41116429:-|nuORF	ENST00000436545.5_1_17:41116178-41116429:-|nuORF	ENST00000436545.5_1_17:41116178-41116429:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	606.2739868164062	2	606.273706	1210.53286	-0.5296	-0.00032108	0.15363	9.3139E-05	-0.37597	-0.00022794	606.2736051065918	40.232	0.98823	37.523	37.302	38.29	-2.7097					42	19	3	0	0	0	0.68391	1	2016	2016		25.574	3.6142	1	131260			38588	11878	31849	31872	41907	41907					-0.06398528362251454
MPESSPPPWSP	11	Unmodified	_MPESSPPPWSP_					0	0	0		ENST00000436545.5_1_17:41116178-41116429:-|nuORF	ENST00000436545.5_1_17:41116178-41116429:-|nuORF	ENST00000436545.5_1_17:41116178-41116429:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	606.273706	1210.53286	0.072042	4.3677E-05	-0.54202	-0.00032861	-0.46997	-0.00028493	606.2732277194143	40.097	1.2919	37.143	36.913	38.205	-2.9541	-0.18991	-0.00061571	NaN	25.574	37	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84583			38589	11878	31849	31872							-0.06398528362251454
MPEVKVPEI	9	Oxidation (M)	_M(Oxidation (M))PEVKVPEI_		M(1)PEVKVPEI		M(82)PEVKVPEI	0	0	1		ENST00000508483.1_1_4:175229968-175237474:+|nuORF;ENSG00000164118|ENST00000503780|CEP44;nc|ENSG00000164118|Q9C0F1-2|CEP44	ENST00000508483.1_1_4:175229968-175237474:+|nuORF	ENST00000508483.1_1_4:175229968-175237474:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.2863159179688	2	529.283543	1056.55253	-0.23033	-0.00012191	3.8486	0.002037	3.6183	0.0019151	529.2853536749242	68.328	1.2763	64.838	64.526	65.802	-3.4902					61	25	3	0	0	0	0.16562	1	5061	5061		82.241	7.9855	1	732110			38590	6415	31850	31873	41908	41908		202			0.026518476484852727
MPFHLLKP	8	Unmodified	_MPFHLLKP_					0	0	0		ENST00000374280.3_1_1:26349336-26349810:+|nuORF	ENST00000374280.3_1_1:26349336-26349810:+|nuORF	ENST00000374280.3_1_1:26349336-26349810:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.30975341796875	2	491.780773	981.546994	-0.212	-0.00010426	2.0562	0.0010112	1.8442	0.00090695	491.7816503722891	103.73	0.88985	101.61	101.33	102.22	-2.1192					24	16	2	0	0	0	0.028476	1	9398	9398		37.028	0	1	75103			38591	11032	31851	31874	41909	41909					0.05548213647341527
MPFLHWSN	8	Unmodified	_MPFLHWSN_					0	0	0			REV__ENST00000471217.5_1_10:93716996-93718971:+|nuORF	REV__ENST00000471217.5_1_10:93716996-93718971:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7890625	2	516.242012	1030.46947	-0.24865	-0.00012836	1.886	0.00097363	1.6373	0.00084527	516.2429539663148	78.104	1.3829	75.288	74.97	76.353	-2.8165					43	28	3	0	0	0	0.028476	1	6405	6405		33.516	0	1	109420	+		38592	26273	31852	31875	41910	41910					-0.044544242888377994
MPGAAVVLLL	10	Unmodified	_MPGAAVVLLL_					0	0	0		LAMA2|p.G6V|1|0.45|ENSG00000196569|chr6:128883262-128883262|G/T|missense_variant	LAMA2|p.G6V|1|0.45|ENSG00000196569|chr6:128883262-128883262|G/T|missense_variant	LAMA2|p.G6V|1|0.45|ENSG00000196569|chr6:128883262-128883262|G/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.29986572265625	2	492.301539	982.588524	0.24208	0.00011917	2.6976	0.001328	2.9396	0.0014472	492.30107538233324	94.474	2.6697	93.375	91.973	94.642	-1.0995					72	52	2	0	0	0	0.026839	1	8365	8365		35.201	0	1	44396			38593	14792	31853	31876	41911	41911					0.09653349616019113
MPGARHLTTT	10	Unmodified	_MPGARHLTTT_					0	0	0			REV__ENST00000246174.6_2_X:101856818-101856902:+|nuORF	REV__ENST00000246174.6_2_X:101856818-101856902:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.7861938476562	2	542.782033	1083.54951	-1.2811	-0.00069537	-2.0539	-0.0011148	-3.3351	-0.0018102	542.7810118569943	92.062	1.0148	89.52	89.212	90.226	-2.5425					55	19	4	0	0	0	0.026994	1	7960	7960		19.104	6.1443	1	183190	+		38594	23841	31854	31877	41912	41912					0.011080173143227512
MPGARHLTTT	10	Unmodified	_MPGARHLTTT_					0	0	0			REV__ENST00000246174.6_2_X:101856818-101856902:+|nuORF	REV__ENST00000246174.6_2_X:101856818-101856902:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	542.782033	1083.54951	-0.77271	-0.00041941	-2.5601	-0.0013896	-3.3329	-0.001809	542.780671215028	91.548	0.85799	89.524	89.231	90.089	-2.0241	0.0019146	-0.00038601	NaN	8.6937	51	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210040	+		38595	23841	31854	31877							0.011080173143227512
MPGRLPESP	9	Unmodified	_MPGRLPESP_					0	0	0			REV__ENSG00000100078|ENST00000215885|PLA2G3	REV__ENSG00000100078|ENST00000215885|PLA2G3	MULTI-SECPEP	OvCa9_classI_Rep3	3	491.7826232910156	2	492.252577	982.490601	-1.3622	-0.00067054	-2.9794	-0.0014666	-4.3415	-0.0021371	492.25098143563804	85.663	0.65037	83.443	83.235	83.885	-2.2204					18	12	2	0	0	0	0.027448	1	5039	5039		44.117	0	1	40829	+		38596	17361	31855	31878	41913	41913					-0.0013445897999417866
MPHLDQTPN	9	Unmodified	_MPHLDQTPN_					0	0	0		ENSG00000110344|ENST00000252108|UBE4A;nc|ENSG00000110344|Q14139-2|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	ENSG00000110344|ENST00000252108|UBE4A	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.7423095703125	2	526.745116	1051.47568	-2.0479	-0.0010787	-2.1381	-0.0011262	-4.186	-0.0022049	526.7436709093864	118.89	1.5117	117.54	117.21	118.72	-1.3444					69	28	4	0	0	0	0.42676	1	11150	11150		49.442	5.3247	1	176740			38597	2769	31856	31879	41914	41914					-0.04799950847973378
MPIDGNVVDVV	11	Unmodified	_MPIDGNVVDVV_					0	0	0			REV__tr|A0A7D6ZZ16|A0A7D6ZZ16_9CLOTDUF1667domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04220PE=4SV=1	REV__tr|A0A7D6ZZ16|A0A7D6ZZ16_9CLOTDUF1667domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04220PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	579.31005859375	2	579.297181	1156.57981	-0.96423	-0.00055858	-1.4698	-0.00085145	-2.434	-0.00141	579.2963953463426	98.744	0.19968	97.851	97.757	97.957	-0.89305					5	3	2	0	0	0	0.025453	1	8986	8986		62.107	0	1	14291	+		38598	32395	31857	31880	41915	41915					0.007783311888715616
MPIIMTYF	8	Unmodified	_MPIIMTYF_					0	0	0			REV__ENSG00000197786|ENST00000357377|OR5B17	REV__ENSG00000197786|ENST00000357377|OR5B17	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.8199462890625	2	508.2532	1014.49185	1.4831	0.00075377	3.8643	0.0019641	5.3474	0.0027178	508.255496860317	83.1	0.42818	83.1	82.865	83.293	0					14	9	2	0	0	0	0.028476	1	8600	8600		46.766	2.6496	1	240680	+		38599	22951	31858	31881	41916	41916					-0.014819609354390195
MPILPAFI	8	Unmodified	_MPILPAFI_					0	0	0			REV__ENST00000349841.9_1_3:169505567-169505981:+|nuORF	REV__ENST00000349841.9_1_3:169505567-169505981:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	451.2673645019531	2	451.264425	900.514297	0.55964	0.00025254	3.289	0.0014842	3.8487	0.0017368	451.2657863867747	89.158	1.2365	86.555	86.286	87.523	-2.6027					47	24	2	0	0	0	0.58426	1	7639	7639		67.327	7.0332	1	573870	+		38600	24718	31859	31882	41917	41917					0.0600600652447838
MPIRHGWSF	9	Unmodified	_MPIRHGWSF_					0	0	0			REV__nc|ENSG00000154258|Q8IUA7-4|ABCA9	REV__nc|ENSG00000154258|Q8IUA7-4|ABCA9	MULTI-SECPEP	OvCa9_classI_Rep2	2	564.8101196289062	2	565.781836	1129.54912	0.074368	4.2076E-05	-1.3826	-0.00078225	-1.3082	-0.00074017	565.7827974830201	107.34	0.49081	107.04	106.77	107.26	-0.30836					12	9	2	0	0	0	0.027462	1	9996	9996		18.324	0	1	11449	+		38601	20371	31860	31883	41918	41918					-0.010473576148342545
MPITWNQQLV	10	Oxidation (M)	_M(Oxidation (M))PITWNQQLV_		M(1)PITWNQQLV		M(99)PITWNQQLV	0	0	1		tr|A0A553SPS8|A0A553SPS8_NIACIROKfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_26900PE=3SV=1	tr|A0A553SPS8|A0A553SPS8_NIACIROKfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_26900PE=3SV=1	tr|A0A553SPS8|A0A553SPS8_NIACIROKfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_26900PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	623.31884765625	2	623.318448	1244.62234	2.7901	0.0017391	-3.8527	-0.0024014	-1.0625	-0.00066229	623.3159837519189	89.66	0.79233	89.66	89.394	90.186	0					50	18	4	0	0	0	0.1722	1	9599	9599		98.629	7.3642	1	9612300			38602	34079	31861	31884	41919	41919		749			0.009817263170816659
MPITWNQQLV	10	Oxidation (M)	_M(Oxidation (M))PITWNQQLV_					0	0	1		tr|A0A553SPS8|A0A553SPS8_NIACIROKfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_26900PE=3SV=1	tr|A0A553SPS8|A0A553SPS8_NIACIROKfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_26900PE=3SV=1	tr|A0A553SPS8|A0A553SPS8_NIACIROKfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_26900PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	623.318448	1244.62234	0.6566	0.00040927	-4.3719	-0.0027251	-3.7153	-0.0023158	623.3156857718285	91.127	0.98507	89.892	89.341	90.326	-1.2355	0.14759	-0.00096228	NaN	98.629	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42021			38603	34079	31861	31884				749			0.009817263170816659
MPITWNQQLV	10	Oxidation (M)	_M(Oxidation (M))PITWNQQLV_					0	0	1		tr|A0A553SPS8|A0A553SPS8_NIACIROKfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_26900PE=3SV=1	tr|A0A553SPS8|A0A553SPS8_NIACIROKfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_26900PE=3SV=1	tr|A0A553SPS8|A0A553SPS8_NIACIROKfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_26900PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	623.318448	1244.62234	-0.19189	-0.00011961	-3.5272	-0.0021986	-3.7191	-0.0023182	623.316185929139	91.754	0.60571	89.73	89.483	90.089	-2.0241	-0.013824	9.0684E-05	NaN	98.629	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98544			38604	34079	31861	31884				749			0.009817263170816659
MPITWNQQLV	10	Oxidation (M)	_M(Oxidation (M))PITWNQQLV_					0	0	1		tr|A0A553SPS8|A0A553SPS8_NIACIROKfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_26900PE=3SV=1	tr|A0A553SPS8|A0A553SPS8_NIACIROKfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_26900PE=3SV=1	tr|A0A553SPS8|A0A553SPS8_NIACIROKfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_26900PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	623.318448	1244.62234	-0.76824	-0.00047886	-2.5291	-0.0015764	-3.2973	-0.0020553	623.3166171626292	92.237	0.60992	89.694	89.466	90.076	-2.5425	-0.049604	0.001335	NaN	98.629	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73626			38605	34079	31861	31884				749			0.009817263170816659
MPIVAGMGGN	10	Unmodified	_MPIVAGMGGN_					0	0	0		tr|A0A7D6ZF03|A0A7D6ZF03_9CLOTMagnesiumtransporterMgtEOS=ClostridiumintestinaleOX=36845GN=mgtEPE=3SV=1	tr|A0A7D6ZF03|A0A7D6ZF03_9CLOTMagnesiumtransporterMgtEOS=ClostridiumintestinaleOX=36845GN=mgtEPE=3SV=1	tr|A0A7D6ZF03|A0A7D6ZF03_9CLOTMagnesiumtransporterMgtEOS=ClostridiumintestinaleOX=36845GN=mgtEPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.24749755859375	2	473.72788	945.441208	-0.4205	-0.0001992	-0.66592	-0.00031547	-1.0864	-0.00051467	473.7273155235345	44.595	0.39977	44.595	44.35	44.75	0					13	8	2	0	0	0	0.026519	1	3006	3006		55.504	0	1	200250			38606	35495	31862	31885	41920	41920					-0.03369490260422481
MPIVTGYF	8	Unmodified	_MPIVTGYF_					0	0	0			REV__nc|ENSG00000181282|Q8NH89|OR5AK3P	REV__nc|ENSG00000181282|Q8NH89|OR5AK3P	MULTI-MSMS	OvCa99_classI_Rep5	1	464.237548828125	2	464.235864	926.457176	0.50083	0.0002325	1.8687	0.00086752	2.3695	0.0011	464.2365617702465	114.34	1.196	114.34	113.92	115.12	0					54	25	3	0	0	0	0.59103	2	13025	13025;13048		65.897	8.4448	1	661830	+		38607	22224	31863	31886	41921;41922	41921					-0.00899460751895731
MPKAEVNLGG	10	Unmodified	_MPKAEVNLGG_					0	0	0		ZFHX4|p.S2870Mfs*29|1|0.03|ENSG00000091656|chr8:76855527-76855545|CAAGCCCATCCATCCATTT/-|frameshift_variant;nc|ENSG00000091656|Q86UP3|ZFHX4;nc|ENSG00000091656|Q86UP3-4|ZFHX4;nc|ENSG00000091656|Q86UP3-2|ZFHX4;ENSG00000091656|ENST00000651372|ZFHX4;ZFHX4|p.H1969Qfs*17|1|0.12|ENSG00000091656|chr8:76852827-76852828|-/GAAACCGACTAAAGAACCCT|frameshift_variant;nc|ENSG00000091656|Q86UP3-3|ZFHX4;ENST00000458716.2_1_8:77616323-77620415:+|nuORF	ZFHX4|p.S2870Mfs*29|1|0.03|ENSG00000091656|chr8:76855527-76855545|CAAGCCCATCCATCCATTT/-|frameshift_variant	ZFHX4|p.S2870Mfs*29|1|0.03|ENSG00000091656|chr8:76855527-76855545|CAAGCCCATCCATCCATTT/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.8140869140625	2	508.265684	1014.51682	-1.0869	-0.00055243	-2.4556	-0.0012481	-3.5425	-0.0018005	508.2643414368282	95.752	1.8641	93.923	93.481	95.345	-1.8286					82	36	4	0	0	0	0.027841	1	6414	6414		104.06	19.141	1	352820			38608	1875	31864	31887	41923	41923					0.010138101915003972
MPKALRQLKPG	11	Unmodified	_MPKALRQLKPG_					0	0	0		nc|ENSG00000158321|Q8WXX7-3|AUTS2;nc|ENSG00000158321|Q8WXX7-2|AUTS2;ENSG00000158321|ENST00000342771|AUTS2	nc|ENSG00000158321|Q8WXX7-3|AUTS2	nc|ENSG00000158321|Q8WXX7-3|AUTS2	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8690185546875	2	619.873725	1237.7329	-3.1788	-0.0019704	-3.6837	-0.0022835	-6.8625	-0.0042539	619.8711859647292	147.21	3.9856	146.98	144.83	148.82	-0.22696					207	79	4	0	0	0	0.70865	1	14814	14814		26.693	0.62953	1	163200			38609	5947	31865	31888	41924	41924					0.12353991095983474
MPKIMDNSH	9	Unmodified	_MPKIMDNSH_					0	0	0		tr|A0A7D6VPQ3|A0A7D6VPQ3_9CLOTGlycosyltransferasefamily4proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19685PE=4SV=1	tr|A0A7D6VPQ3|A0A7D6VPQ3_9CLOTGlycosyltransferasefamily4proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19685PE=4SV=1	tr|A0A7D6VPQ3|A0A7D6VPQ3_9CLOTGlycosyltransferasefamily4proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19685PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3052978515625	2	536.749344	1071.48414	1.5293	0.00082086	-2.5631	-0.0013757	-1.0338	-0.00055488	536.7476787011826	112.17	0.41594	112.17	111.93	112.34	0					14	8	2	0	0	0	0.027446	1	12752	12752		42.864	0	1	132280			38610	34789	31867	31889	41925	41925					-0.04874720203019933
MPKRGSFIK	9	Unmodified	_MPKRGSFIK_					0	0	0			REV__CPT1A|p.Y427Tfs*104|1|0.15|ENSG00000110090|chr11:68781845-68781845|T/-|frameshift_variant	REV__CPT1A|p.Y427Tfs*104|1|0.15|ENSG00000110090|chr11:68781845-68781845|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	532.7628173828125	2	532.307687	1062.60082	-2.4486	-0.0013034	-2.3294	-0.0012399	-4.778	-0.0025433	532.3062573201191	118.45	0.94444	118.3	118.08	119.03	-0.14755					49	18	4	0	0	0	0.027441	1	11433	11433		68.787	21.129	1	106020	+		38611	16234	31868	31890	41926	41926					0.07202386079052303
MPKSHYIN	8	Unmodified	_MPKSHYIN_					0	0	0			REV__nc|ENSG00000104755|Q99965-2|ADAM2	REV__nc|ENSG00000104755|Q99965-2|ADAM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.78900146484375	2	495.247295	988.480036	2.7377	0.0013559	0.29956	0.00014835	3.0373	0.0015042	495.2473281877751	88.823	1.2916	88.823	87.712	89.004	0					36	30	2	0	0	0	0.028476	1	9347	9347		35.618	7.736	1	194200	+		38612	17678	31869	31891	41927	41927					-0.014664416344089659
MPKVLDSDGY	10	Unmodified	_MPKVLDSDGY_					0	0	0		ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.7685546875	2	562.768257	1123.52196	0.82545	0.00046454	2.3385	0.001316	3.164	0.0017806	562.7693887356999	123.94	0.90845	122.55	122.32	123.23	-1.3908					32	17	2	0	0	0	0.32926	1	11737	11737		77.318	10.888	1	78613			38613	1872	31870	31892	41928	41928					-0.034859307365422865
MPKWENLL	8	Unmodified	_MPKWENLL_					0	0	0			REV__tr|A0A553SRS7|A0A553SRS7_NIACIAminoglycosidephosphotransferaseOS=NialliacirculansOX=1397GN=CEQ21_01660PE=4SV=1	REV__tr|A0A553SRS7|A0A553SRS7_NIACIAminoglycosidephosphotransferaseOS=NialliacirculansOX=1397GN=CEQ21_01660PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	515.7741088867188	2	515.773145	1029.53174	0.25666	0.00013238	1.9843	0.0010235	2.241	0.0011558	515.7741357954794	109.36	1.83	109.19	108.52	110.35	-0.17237					68	36	2	0	0	0	0.56195	1	10276	10276		71.296	4.8664	1	218150	+		38614	30761	31871	31893	41929	41929					0.018153020594809277
MPLALIGSLV	10	Unmodified	_MPLALIGSLV_					0	0	0			REV__ENST00000317025.12_1_8:38187341-38189007:-|nuORF	REV__ENST00000317025.12_1_8:38187341-38189007:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.8415222167969	2	507.306821	1012.59909	0.20291	0.00010294	1.9236	0.00097584	2.1265	0.0010788	507.81033565317193	110.65	0.41746	109.51	109.35	109.76	-1.1444					11	7	2	0	0	0	0.026949	1	8004	8004		110.34	39.042	1	21529	+		38615	24411	31872	31894	41930	41930					0.09329332270442592
MPLAQQSVTP	10	Unmodified	_MPLAQQSVTP_					0	0	0			REV__ENST00000557725.5_1_14:93172722-93179177:-|nuORF	REV__ENST00000557725.5_1_14:93172722-93179177:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	536.28125	2	536.278792	1070.54303	1.1095	0.00059503	-1.6866	-0.00090447	-0.57701	-0.00030944	536.2778823916158	142.93	0.58087	142.93	142.69	143.27	0					28	11	3	0	0	0	0.59703	1	16697	16697		42.396	5.237	1	198420	+		38616	27577	31873	31895	41931	41931					0.010580793629742402
MPLKGNVDV	9	Unmodified	_MPLKGNVDV_					0	0	0			REV__tr|A0A7D6ZII0|A0A7D6ZII0_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07105PE=4SV=1	REV__tr|A0A7D6ZII0|A0A7D6ZII0_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07105PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.2900695800781	2	486.762778	971.511002	1.1906	0.00057953	-4.1355	-0.002013	-2.9449	-0.0014335	486.7603603157517	96.999	1.1007	94.573	94.169	95.27	-2.4256					26	21	2	0	0	0	0.02721	1	8546	8546		73.975	7.5455	1	32020	+		38617	32057	31874	31896	41932	41932					0.024107116798290917
MPLKHKED	8	Unmodified	_MPLKHKED_					0	0	0		tr|A0A7D6ZFN0|A0A7D6ZFN0_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15680PE=4SV=1	tr|A0A7D6ZFN0|A0A7D6ZFN0_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15680PE=4SV=1	tr|A0A7D6ZFN0|A0A7D6ZFN0_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15680PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.2861328125	2	499.260402	996.506251	0.374	0.00018672	-4.1796	-0.0020867	-3.8057	-0.0019	499.2581194366468	63.29	0.67292	63.29	63.1	63.773	0					28	16	3	0	0	0	0.028476	1	5689	5689		76.847	20.126	1	703040			38618	35518	31875	31897	41933	41933					0.00785827537060868
MPLLLNPKL	9	Oxidation (M)	_M(Oxidation (M))PLLLNPKL_		M(1)PLLLNPKL		M(82)PLLLNPKL	0	0	1		nc|ENSG00000030304|O15146-3|MUSK;nc|ENSG00000030304|O15146-2|MUSK;ENSG00000030304|ENST00000374448|MUSK	nc|ENSG00000030304|O15146-3|MUSK	nc|ENSG00000030304|O15146-3|MUSK	MULTI-MSMS	OvCa99_classI_Rep5	1	527.82373046875	2	527.820095	1053.62564	2.8575	0.0015082	3.2195	0.0016993	6.0769	0.0032075	527.8216237205838	89.83	0.50165	89.83	89.6	90.101	0					21	11	3	0	0	0	0.16524	1	9620	9620		82.305	11.009	1	624300			38619	1065	31876	31898	41934	41934		37			0.10097021161755038
MPLLPRPWAP	10	Unmodified	_MPLLPRPWAP_					0	0	0			REV__ENST00000541028.5_1_15:52553308-52587917:-|nuORF	REV__ENST00000541028.5_1_15:52553308-52587917:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	589.8269653320312	2	589.331162	1176.64777	0.056487	3.329E-05	-1.8506	-0.0010906	-1.7941	-0.0010573	589.329910689287	114.55	0.54338	114.55	114.15	114.7	0					28	11	4	0	0	0	0.56767	1	13079	13079		45.952	3.0877	1	149170	+		38620	27360	31877	31899	41935	41935					0.0665124563020072
MPLLRQEEL	9	Unmodified	_MPLLRQEEL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	OvCa9_classI_Rep2	2	564.8058471679688	2	564.807716	1127.60088	-0.31264	-0.00017658	-0.78212	-0.00044175	-1.0948	-0.00061833	564.807441321003	94.488	1.7797	93.389	93.062	94.842	-1.0995					79	35	3	0	0	0	0.084918	2	8461	8461;8466		101.25	26.998	1	525730			38621	1044	31878	31900	41936;41937	41936					0.042183412884014615
MPLLRQEEL	9	Unmodified	_MPLLRQEEL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	OvCa9_classI_Rep3	3	564.808349609375	2	564.807716	1127.60088	-0.87152	-0.00049224	-0.077945	-4.4024E-05	-0.94947	-0.00053627	564.8079123175954	95.381	1.8086	93.486	93.16	94.969	-1.8956					82	35	3	0	0	0	0.021573	3	6217	6205;6211;6217		145.16	54.786	1	682040			38622	1044	31878	31900	41938;41939;41940	41940					0.042183412884014615
MPLLRQEEL	9	Unmodified	_MPLLRQEEL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2;ENST00000540884.1_1_19:48232905-48244686:+|nuORF	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.8087768554688	2	564.807716	1127.60088	0.68467	0.00038671	-1.7783	-0.0010044	-1.0936	-0.00061768	564.8069082402776	95.959	1.9144	93.534	93.154	95.069	-2.4256					87	37	3	0	0	0	0.060996	2	8463	8451;8463		112.41	7.6644	1	661610			38623	1044	31878	31900	41941;41942	41942					0.042183412884014615
MPLNHQSAVG	10	Unmodified	_MPLNHQSAVG_					0	0	0			REV__ENSG00000067704|ENST00000366922|IARS2	REV__ENSG00000067704|ENST00000366922|IARS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.2625732421875	2	527.260933	1052.50731	-2.3112	-0.0012186	2.6941	0.0014205	0.38292	0.0002019	527.2622143752221	107.26	1.8139	105.39	104.75	106.56	-1.8785					78	35	4	0	0	0	0.33376	1	9777	9777		76.774	2.5191	1	619300	+		38624	16838	31879	31901	41943	41943					-0.01683958094031368
MPLPHMSLV	9	Oxidation (M)	_MPLPHM(Oxidation (M))SLV_		M(0.001)PLPHM(0.999)SLV		M(-31)PLPHM(31)SLV	0	0	1		tr|A0A553SN50|A0A553SN50_NIACIProbablemalate:quinoneoxidoreductaseOS=NialliacirculansOX=1397GN=mqoPE=3SV=1	tr|A0A553SN50|A0A553SN50_NIACIProbablemalate:quinoneoxidoreductaseOS=NialliacirculansOX=1397GN=mqoPE=3SV=1	tr|A0A553SN50|A0A553SN50_NIACIProbablemalate:quinoneoxidoreductaseOS=NialliacirculansOX=1397GN=mqoPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	520.767333984375	2	520.767006	1039.51946	-0.63485	-0.00033061	-0.75663	-0.00039403	-1.3915	-0.00072464	520.766555060983	76.275	3.5537	73.903	73.518	77.072	-2.3715					215	69	5	0	0	0	0.1595	2	3923	3923;3973		83.287	6.4406	2	4347000			38625	33904	31880	31902	41944;41945	41944		746			0.0012794232482065127
MPLRMTLPK	9	Unmodified	_MPLRMTLPK_					0	0	0			REV__nc|ENSG00000103460|O15405-2|TOX3	REV__nc|ENSG00000103460|O15405-2|TOX3	MULTI-MSMS	OvCa9_classI_Rep2	2	543.8097534179688	2	543.811748	1085.60894	0.061836	3.3627E-05	-1.154	-0.00062753	-1.0921	-0.00059391	543.8110823033019	113.47	1.4323	113.35	113.07	114.5	-0.11777					61	28	4	0	0	0	0.083631	1	10773	10773		101.6	11.231	1	171940	+		38626	17618	31881	31903	41946	41946					0.06956197004160458
MPLRMTLPK	9	Unmodified	_MPLRMTLPK_					0	0	0			REV__nc|ENSG00000103460|O15405-2|TOX3	REV__nc|ENSG00000103460|O15405-2|TOX3	MULTI-MSMS	OvCa9_classI_Rep3	3	543.8088989257812	2	543.811748	1085.60894	0.13896	7.5568E-05	-1.3283	-0.00072236	-1.1894	-0.00064679	543.8108855547393	114.35	1.3927	113.29	113	114.39	-1.055					65	27	3	0	0	0	0.053172	3	8443	8437;8443;8449		116.9	8.4361	1	149470	+		38627	17618	31881	31903	41947;41948;41949	41948					0.06956197004160458
MPLWNAKTLK	10	Unmodified	_MPLWNAKTLK_					0	0	0		ENST00000528896.6_1_17:26961702-26961825:-|nuORF	ENST00000528896.6_1_17:26961702-26961825:-|nuORF	ENST00000528896.6_1_17:26961702-26961825:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.2115478515625	3	401.230243	1200.6689	0.59286	0.00023787	1.7028	0.00068321	2.2957	0.00092108	401.23081008054936	50.065	0.78136	50.065	49.813	50.594	0					47	17	4	0	0	0	0.026915	1	3768	3768		14.694	0	1	2480700			38628	13263	31882	31904	41950	41950					0.07659210939050354
MPMHVKDEI	9	Unmodified	_MPMHVKDEI_					0	0	0			REV__nc|ENSG00000115762|Q96CS7-4|PLEKHB2	REV__nc|ENSG00000115762|Q96CS7-4|PLEKHB2	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.2664184570312	2	550.26737	1098.52019	0.207	0.00011391	-1.0542	-0.00058007	-0.84715	-0.00046616	550.2666821383556	141.99	0.84273	140.52	140.29	141.13	-1.4627					37	15	3	0	0	0	0.65476	1	13881	13881		25.45	0.93098	1	91853	+		38629	18268	31883	31905	41951	41951					-0.025132630261396116
MPMTCIFPK	9	2 Oxidation (M)	_M(Oxidation (M))PM(Oxidation (M))TCIFPK_		M(1)PM(1)TCIFPK		M(93)PM(93)TCIFPK	0	0	2			REV__ENST00000564150.1_1_16:58147931-58149427:-|nuORF	REV__ENST00000564150.1_1_16:58147931-58149427:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	550.2540283203125	2	550.252874	1098.49119	1.0282	0.00056575	-0.2927	-0.00016106	0.73546	0.00040469	550.2526507974782	145.25	0.59166	145.25	144.89	145.48	0					34	12	4	0	0	0	0.11471	1	16971	16971		93.195	19.221	1	380690	+		38630	27664	31884	31906	41952	41952		615;616			-0.05411123646786109
MPNERRIQ	8	Unmodified	_MPNERRIQ_					0	0	0			REV__DOCK3|p.K1465Pfs*18|1|0.29|ENSG00000088538|chr3:51356230-51356231|-/TCCCCTCACCTTTCACACACAGCTTCCTTGGGGACCA|frameshift_variant	REV__DOCK3|p.K1465Pfs*18|1|0.29|ENSG00000088538|chr3:51356230-51356231|-/TCCCCTCACCTTTCACACACAGCTTCCTTGGGGACCA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.7841186523438	2	522.274375	1042.5342	-1.1376	-0.00059416	-3.517	-0.0018368	-4.6546	-0.002431	522.2724356322074	70.146	1.8941	66.664	66.105	67.999	-3.4812					62	38	4	0	0	0	0.028476	1	5333	5333		44.117	0	1	393030	+		38631	16329	31885	31907	41953	41953					0.01463150517156464
MPNGMPNMNN	10	Unmodified	_MPNGMPNMNN_					0	0	0			REV__tr|A0A7D7AFK7|A0A7D7AFK7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06030PE=4SV=1	REV__tr|A0A7D7AFK7|A0A7D7AFK7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06030PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	560.2218017578125	2	560.222636	1118.43072	1.7437	0.00097689	-3.5781	-0.0020045	-1.8344	-0.0010277	560.2205297152303	145.54	0.80417	145.54	145.27	146.08	0					38	16	3	0	0	0	0.59703	1	17030	17030		42.396	6.7778	1	230930	+		38632	32716	31886	31908	41954	41954					-0.1237584097718809
MPNKQFLH	8	Unmodified	_MPNKQFLH_					0	0	0			REV__ENST00000534971.1_1_11:71733276-71735881:-|nuORF	REV__ENST00000534971.1_1_11:71733276-71735881:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.31610107421875	2	507.763112	1013.51167	-1.5159	-0.00076971	1.3272	0.00067389	-0.18872	-9.5823E-05	507.7636935220244	117.29	3.8609	117.16	116.12	119.98	-0.12869					148	77	2	0	0	0	0.028476	1	11207	11207		28.254	0	1	83506	+		38633	27279	31887	31909	41955	41955					0.005455511195350482
MPNLTVVGIA	10	Unmodified	_MPNLTVVGIA_					0	0	0		tr|A0A7D6VRS1|A0A7D6VRS1_9CLOTFeMocofactorbiosynthesisproteinNifBOS=ClostridiumintestinaleOX=36845GN=nifBPE=3SV=1	tr|A0A7D6VRS1|A0A7D6VRS1_9CLOTFeMocofactorbiosynthesisproteinNifBOS=ClostridiumintestinaleOX=36845GN=nifBPE=3SV=1	tr|A0A7D6VRS1|A0A7D6VRS1_9CLOTFeMocofactorbiosynthesisproteinNifBOS=ClostridiumintestinaleOX=36845GN=nifBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7890930175781	2	507.786253	1013.55795	-0.34924	-0.00017734	3.337	0.0016945	2.9877	0.0015171	507.78796796196445	47.165	1.8311	44.093	43.604	45.435	-3.0724					104	35	4	0	0	0	0.6349	1	2521	2521		37.812	0.78304	1	3261100			38634	34952	31888	31910	41956	41956					0.051715712309714945
MPNREEKLE	9	Unmodified	_MPNREEKLE_					0	0	0			REV__ENST00000301399.11_1_19:52376656-52376935:-|nuORF	REV__ENST00000301399.11_1_19:52376656-52376935:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	573.2830200195312	2	573.284605	1144.55466	2.4135	0.0013836	-3.4239	-0.0019629	-1.0105	-0.0005793	573.2824593724814	75.76	0.47256	75.76	75.563	76.036	0					25	11	3	0	0	0	0.42676	1	7559	7559		49.442	10.635	1	2357600	+		38635	24249	31889	31911	41957	41957					-0.011837236137125728
MPNREEKLE	9	Unmodified	_MPNREEKLE_					0	0	0			REV__ENST00000301399.11_1_19:52376656-52376935:-|nuORF	REV__ENST00000301399.11_1_19:52376656-52376935:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	573.284605	1144.55466	2.4135	0.0013836	-3.4239	-0.0019629	-1.0105	-0.0005793	573.2824593724814	75.76	0.47256	75.76	75.563	76.036	0	0	0	NaN	49.442	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2357600	+		38636	24249	31889	31911							-0.011837236137125728
MPPEPIIIN	9	Oxidation (M)	_M(Oxidation (M))PPEPIIIN_		M(1)PPEPIIIN		M(48)PPEPIIIN	0	0	1		nc|ENSG00000066117|Q96GM5-2|SMARCD1;ENSG00000066117|ENST00000394963|SMARCD1	nc|ENSG00000066117|Q96GM5-2|SMARCD1	nc|ENSG00000066117|Q96GM5-2|SMARCD1	MULTI-MSMS	OvCa99_classI_Rep5	1	520.2769165039062	2	520.27826	1038.54197	-0.80704	-0.00041988	-1.9871	-0.0010339	-2.7942	-0.0014538	520.2771865522388	23.322	2.8995	23.322	23.093	25.992	0					105	57	2	0	0	0	0.44294	1	336	336		47.916	10.756	1	593440			38637	1344	31890	31912	41958	41958		51			0.024238649940798496
MPPEQLLQD	9	Unmodified	_MPPEQLLQD_					0	0	0		ENSG00000134250|ENST00000256646|NOTCH2;ENST00000493703.1_1_1:120465142-120466525:-|nuORF	ENSG00000134250|ENST00000256646|NOTCH2	ENSG00000134250|ENST00000256646|NOTCH2	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.8106689453125	2	535.762975	1069.5114	0.095786	5.1318E-05	0.08694	4.6579E-05	0.18273	9.7897E-05	535.7626352599916	91.695	0.7386	90.459	90.007	90.746	-1.2355					21	13	2	0	0	0	0.027459	1	8134	8134		44.377	10.205	1	24869			38638	4270	31891	31913	41959	41959					-0.020579133909905067
MPPLTATSL	9	Unmodified	_MPPLTATSL_					0	0	0		chrX:97120275-97141665|89|12.45|0.12|6.67|+|0|TE_info:L1PBa1,L1PBa1_dup297,L1,LINE,donor,-,97118913,97120275|None,DIAPH2|15	chrX:97120275-97141665|89|12.45|0.12|6.67|+|0|TE_info:L1PBa1,L1PBa1_dup297,L1,LINE,donor,-,97118913,97120275|None,DIAPH2|15	chrX:97120275-97141665|89|12.45|0.12|6.67|+|0|TE_info:L1PBa1,L1PBa1_dup297,L1,LINE,donor,-,97118913,97120275|None,DIAPH2|15	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.75506591796875	2	465.751879	929.489204	0.23003	0.00010714	3.9234	0.0018273	4.1534	0.0019345	465.75350138597	60.501	2.8311	57.071	56.553	59.384	-3.43					108	57	4	0	0	0	0.11171	1	4135	4135		94.006	14.067	1	6166000			38639	573	31892	31914	41960	41960					0.021639069312641368
MPPPGVVK	8	Unmodified	_MPPPGVVK_					0	0	0		DTX4-KRT7|1|fusion;nc|ENSG00000110042|Q9Y2E6-2|DTX4;ENSG00000110042|ENST00000227451|DTX4	DTX4-KRT7|1|fusion;nc|ENSG00000110042|Q9Y2E6-2|DTX4	DTX4-KRT7|1|fusion	MSMS	OvCa99_classI_Rep5	1	412.73834228515625	2	412.738574	823.462595	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.1	1	133.1	132.6	133.6	0								0	0	0	0.30129	1	15474	15474		37.028	1.8278	1				38640	764;2748	31893	31915	41961	41961					0.04380262830579795
MPPPPPQMWP	10	Unmodified	_MPPPPPQMWP_					0	0	0			REV__nc|ENSG00000168066|Q15637-7|SF1	REV__nc|ENSG00000168066|Q15637-7|SF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	588.8162231445312	2	589.28028	1176.54601	1.7394	0.001025	-3.2311	-0.001904	-1.4917	-0.000879	589.2784541136024	129.78	0.84183	128.32	127.99	128.83	-1.4565					40	16	3	0	0	0	0.026822	1	12401	12401		47.916	13.743	1	48025	+		38641	21343	31894	31916	41962	41962					-0.03520368783892991
MPQDVVVEL	9	Unmodified	_MPQDVVVEL_					0	0	0			REV__ENSG00000147465|ENST00000276449|STAR	REV__ENSG00000147465|ENST00000276449|STAR	MULTI-MSMS	OvCa99_classI_Rep5	1	515.2682495117188	2	515.267893	1028.52123	1.5159	0.00078108	-1.6029	-0.00082594	-0.087065	-4.4862E-05	515.2669159352542	133.46	1.0215	133.46	133.08	134.1	0					44	18	4	0	0	0	0.48047	1	15526	15526		44.377	3.8046	1	817710	+		38642	20068	31895	31917	41963	41963					0.00811274614420654
MPQKDWCFST	10	Unmodified	_MPQKDWCFST_					0	0	0		ENSG00000162782|ENST00000444136|TDRD5;nc|ENSG00000162782|Q8NAT2|TDRD5	ENSG00000162782|ENST00000444136|TDRD5	ENSG00000162782|ENST00000444136|TDRD5	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.9082946777344	3	414.847581	1241.52091	0.1922	7.9735E-05	4.2754	0.0017737	4.4676	0.0018534	414.849812614744	42.463	0.55419	42.463	42.199	42.753	0					18	12	2	0	0	0	0.027028	1	2698	2698		17.833	0	1	117490			38643	6235	31896	31918	41964	41964					-0.0901846837712128
MPQLWKWERET	11	Unmodified	_MPQLWKWERET_					0	0	0		L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|57|2|sense	L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|57|2|sense	L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|57|2|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.78289794921875	3	501.918616	1502.73402	-1.7781	-0.00089245	-1.3018	-0.0006534	-3.0799	-0.0015458	501.9178766017884	68.22	0.93632	65.599	65.081	66.018	-2.6203					50	18	3	0	0	0	0.026324	1	5334	5334		8.0344	0	1	30135			38644	14786	31897	31919	41965	41965					0.0027616067422968626
MPQSLRSSYC	10	Unmodified	_MPQSLRSSYC_					0	0	0		ENSG00000188649|ENST00000646931|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.2864990234375	2	586.265358	1170.51616	2.5686	0.0015059	-3.2501	-0.0019054	-0.6815	-0.00039954	586.2614704508376	89.461	0.36296	89.461	89.193	89.556	0					9	8	2	0	0	0	0.026906	1	9530	9530		41.427	18.384	1	120130			38645	8489	31898	31920	41966	41966					-0.06227352519840679
MPQVAAMSDT	10	Unmodified	_MPQVAAMSDT_					0	0	0		tr|A0A553SKX2|A0A553SKX2_NIACIDNArepairproteinRecNOS=NialliacirculansOX=1397GN=recNPE=3SV=1	tr|A0A553SKX2|A0A553SKX2_NIACIDNArepairproteinRecNOS=NialliacirculansOX=1397GN=recNPE=3SV=1	tr|A0A553SKX2|A0A553SKX2_NIACIDNArepairproteinRecNOS=NialliacirculansOX=1397GN=recNPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.8119506835938	2	525.73336	1049.45217	-1.4291	-0.0007513	1.2207	0.00064178	-0.20832	-0.00010952	525.7337986469715	71.193	0.73683	67.737	67.533	68.27	-3.4563					31	14	3	0	0	0	0.026659	1	5476	5476		37.812	6.2817	1	85274			38646	33662	31899	31921	41967	41967					-0.07058132676820605
MPQVAAMSDT	10	Unmodified	_MPQVAAMSDT_					0	0	0		tr|A0A553SKX2|A0A553SKX2_NIACIDNArepairproteinRecNOS=NialliacirculansOX=1397GN=recNPE=3SV=1	tr|A0A553SKX2|A0A553SKX2_NIACIDNArepairproteinRecNOS=NialliacirculansOX=1397GN=recNPE=3SV=1	tr|A0A553SKX2|A0A553SKX2_NIACIDNArepairproteinRecNOS=NialliacirculansOX=1397GN=recNPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	525.73336	1049.45217	0.067017	3.5233E-05	-0.34139	-0.00017948	-0.27437	-0.00014425	525.7330761543144	70.461	0.86137	67.891	67.512	68.374	-2.5707	0.076746	-0.00104	NaN	37.812	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18101			38647	33662	31899	31921							-0.07058132676820605
MPRELFPSH	9	Unmodified	_MPRELFPSH_					0	0	0			REV__nc|ENSG00000091656|Q86UP3|ZFHX4	REV__nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-MSMS	OvCa9_classI_Rep2	2	557.2775268554688	2	557.279126	1112.5437	1.0113	0.00056355	-2.8355	-0.0015801	-1.8242	-0.0010166	557.2758703846443	124.85	1.6313	124.61	124.27	125.9	-0.2359					76	32	5	0	0	0	0.46356	1	12162	12162		45.972	0.020292	1	94202	+		38648	17254	31900	31922	41968	41968					-0.008070811973084346
MPRGVVVTL	9	Oxidation (M)	_M(Oxidation (M))PRGVVVTL_		M(1)PRGVVVTL		M(99)PRGVVVTL	0	0	1		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	OvCa9_classI_Rep2	2	494.2856750488281	2	494.28642	986.558287	-0.096989	-4.7941E-05	-0.33924	-0.00016768	-0.43623	-0.00021562	494.28606431515385	83.612	2.4718	82.013	81.369	83.841	-1.5988					133	49	4	0	0	0	0.091859	1	7168	7168		99.375	25.12	1	1379300			38649	1888	31901	31923	41969	41969		66			0.06446990950826148
MPRGVVVTL	9	Oxidation (M)	_M(Oxidation (M))PRGVVVTL_		M(1)PRGVVVTL		M(85)PRGVVVTL	0	0	1		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	OvCa9_classI_Rep3	3	494.28668212890625	2	494.28642	986.558287	-1.2403	-0.00061306	0.87686	0.00043342	-0.36342	-0.00017964	494.28670132933	84.122	2.6507	81.861	81.346	83.997	-2.261					153	54	4	0	0	0	0.14998	2	4842	4842;4884		84.916	10.66	1	2419900			38650	1888	31901	31923	41970;41971	41970		66			0.06446990950826148
MPRGVVVTL	9	Oxidation (M)	_M(Oxidation (M))PRGVVVTL_		M(1)PRGVVVTL		M(88)PRGVVVTL	0	0	1		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.28729248046875	2	494.28642	986.558287	1.0873	0.00053743	-1.2009	-0.00059358	-0.11361	-5.6154E-05	494.2857084115825	84.709	2.1185	82.046	81.458	83.577	-2.6629					122	43	4	0	0	0	0.13482	2	7087	7087;7159		87.754	13.499	1	1920500			38651	1888	31901	31923	41972;41973	41972		66			0.06446990950826148
MPRGVVVTL	9	Unmodified	_MPRGVVVTL_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	OvCa9_classI_Rep2	2	486.2890319824219	2	486.288963	970.563372	-0.051282	-2.4938E-05	0.13101	6.3706E-05	0.079724	3.8769E-05	486.28890972170547	95.271	2.7144	94.243	93.482	96.196	-1.0281					110	54	3	0	0	0	0.33652	1	8579	8579		58.782	0.97068	1	2640800			38652	1888	31901	31924	41974	41974					0.07691294813446348
MPSGKPLNLIR	11	Unmodified	_MPSGKPLNLIR_					0	0	0			REV__ENST00000501122.2_1_11:65197707-65198040:+|nuORF	REV__ENST00000501122.2_1_11:65197707-65198040:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	409.242919921875	3	409.241031	1224.70126	1.9243	0.00078752	1.5137	0.00061945	3.438	0.001407	409.24151722865713	36.236	1.595	33.387	32.99	34.585	-2.849					71	31	3	0	0	0	0.70848	1	1252	1252		26.75	3.3718	1	214070	+		38653	26818	31902	31925	41975	41975					0.09789998342034778
MPSLKGKAKF	10	Unmodified	_MPSLKGKAKF_					0	0	0		ENSG00000177354|ENST00000374144|C10orf71	ENSG00000177354|ENST00000374144|C10orf71	ENSG00000177354|ENST00000374144|C10orf71	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.3416748046875	2	553.823169	1105.63179	1.1752	0.00065084	1.9206	0.0010637	3.0958	0.0017145	553.8240578466625	36.905	0.79704	34.013	33.595	34.392	-2.8925					37	15	3	0	0	0	0.026994	1	1351	1351		25.574	0	1	30374			38654	7673	31903	31926	41976	41976					0.08319539393278319
MPSLVFKLAV	10	Unmodified	_MPSLVFKLAV_					0	0	0			REV__L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|177|1|anti-sense	REV__L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|177|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.3029174804688	2	552.827921	1103.64129	2.7288	0.0015086	3.2526	0.0017981	5.9814	0.0033067	552.8298340567412	96.288	0.3338	96.288	96.126	96.459	0					12	7	2	0	0	0	0.026665	1	10529	10529		42.396	0	1	266790	+		38655	28599	31904	31927	41977	41977					0.09361307678818775
MPSPSPSFTL	10	Unmodified	_MPSPSPSFTL_					0	0	0			REV__ENST00000370096.7_1_1:103573831-103573945:-|nuORF	REV__ENST00000370096.7_1_1:103573831-103573945:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	532.2617797851562	2	532.260068	1062.50558	0.08447	4.496E-05	2.7926	0.0014864	2.877	0.0015313	532.2615302848436	32.916	0.43777	32.916	32.748	33.186	0					14	8	2	0	0	0	0.55359	1	1478	1478		47.657	5.2612	1	402240	+		38656	24955	31905	31928	41978	41978					-0.02317011902619015
MPSTPGVHHSA	11	Unmodified	_MPSTPGVHHSA_					0	0	0			REV__CATSPER1|p.G176Vfs*159|1|0.23|ENSG00000175294|chr11:66025853-66025853|C/-|frameshift_variant	REV__CATSPER1|p.G176Vfs*159|1|0.23|ENSG00000175294|chr11:66025853-66025853|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.313720703125	2	560.76384	1119.51313	1.3438	0.00075354	2.9419	0.0016497	4.2857	0.0024032	561.267098842691	159.06	0.29533	159.06	158.94	159.24	0					6	5	2	0	0	0	0.025806	1	18660	18660		31.53	14.062	1	14266	+		38657	15743	31906	31929	41979	41979					-0.041848595823466894
MPSVWRAAA	9	Unmodified	_MPSVWRAAA_					0	0	0		ENST00000374580.8_1_2:203241932-203242004:+|nuORF	ENST00000374580.8_1_2:203241932-203242004:+|nuORF	ENST00000374580.8_1_2:203241932-203242004:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	495.3221435546875	2	494.755287	987.496021	-0.35651	-0.00017639	-1.2131	-0.00060018	-1.5696	-0.00077657	494.754837986988	104.06	0.64529	103.48	103.37	104.02	-0.57639					16	12	2	0	0	0	0.027462	1	9677	9677		17.365	0	1	11824			38658	11038	31907	31930	41980	41980					0.0017726460248468356
MPTIYHNACI	10	Oxidation (M)	_M(Oxidation (M))PTIYHNACI_		M(1)PTIYHNACI		M(48)PTIYHNACI	0	0	1			REV__ENSG00000099901|ENST00000430524|RANBP1	REV__ENSG00000099901|ENST00000430524|RANBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	589.7720336914062	2	589.770277	1177.526	1.568	0.00092476	0.42885	0.00025292	1.9969	0.0011777	589.7703769486135	112.32	0.68383	112.32	111.97	112.66	0					33	14	4	0	0	0	0.55359	1	12774	12774		47.657	6.2307	1	421380	+		38659	17339	31908	31931	41981	41981		408			-0.05566164514493721
MPTLLLSLD	9	Unmodified	_MPTLLLSLD_					0	0	0			REV__ENST00000263620.3_19:974543-975197:+|nuORF	REV__ENST00000263620.3_19:974543-975197:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	501.7838134765625	2	501.780636	1001.54672	-0.10372	-5.2046E-05	4.1763	0.0020956	4.0726	0.0020435	501.7824662631339	68.989	1.3132	68.989	68.692	70.005	0					70	31	3	0	0	0	0.36502	1	6570	6570		55.504	2.5675	1	6054300	+		38660	24004	31909	31932	41982	41982					0.046007491368413866
MPTRALNKL	9	Unmodified	_MPTRALNKL_					0	0	0			REV__tr|A0A7D6ZY13|A0A7D6ZY13_9CLOTUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligaseOS=ClostridiumintestinaleOX=36845GN=murFPE=3SV=1	REV__tr|A0A7D6ZY13|A0A7D6ZY13_9CLOTUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligaseOS=ClostridiumintestinaleOX=36845GN=murFPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	522.8017578125	2	522.305144	1042.59573	-0.94017	-0.00049105	2.5599	0.0013371	1.6198	0.00084601	522.3056537162051	101.8	1.3071	100.28	99.951	101.26	-1.5211					47	24	5	0	0	0	0.02744	1	7027	7027		44.377	12.847	1	69156	+		38661	32355	31910	31933	41983	41983					0.0761408221644615
MPTVSPGV	8	Oxidation (M)	_M(Oxidation (M))PTVSPGV_		M(1)PTVSPGV		M(45)PTVSPGV	0	0	1			REV__ENST00000487440.5_1_3:47281337-47324087:-|nuORF	REV__ENST00000487440.5_1_3:47281337-47324087:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	402.2042236328125	2	402.202021	802.38949	0.71713	0.00028843	4.3937	0.0017672	5.1108	0.0020556	402.20358729362204	28.711	0.34915	28.711	28.539	28.888	0					13	6	3	0	0	0	0.69415	1	967	967		44.531	10.359	1	188930	+		38662	17179	31911	31934	41984	41984		405			-0.019609106826806055
MPTVVRPPKQL	11	Unmodified	_MPTVVRPPKQL_					0	0	0		ATP13A3|p.I686Mfs*20|1|0.05|ENSG00000133657|chr3:194437157-194437158|-/CACATTGAAATACAATTCTATCC|frameshift_variant;nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3;nc|ENSG00000133657|Q9H7F0-2|ATP13A3	ATP13A3|p.I686Mfs*20|1|0.05|ENSG00000133657|chr3:194437157-194437158|-/CACATTGAAATACAATTCTATCC|frameshift_variant	ATP13A3|p.I686Mfs*20|1|0.05|ENSG00000133657|chr3:194437157-194437158|-/CACATTGAAATACAATTCTATCC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3687133789062	2	633.373558	1264.73256	-4.8823	-0.0030923	-1.8485	-0.0011708	-6.7309	-0.0042631	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.7046	1	13160	13160		28.081	2.5074	1	765700			38663	128	31912	31935	41985	41985					0.11078571376151558
MPVIKFIY	8	Unmodified	_MPVIKFIY_					0	0	0			REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.3082580566406	2	505.790807	1009.56706	2.0045	0.0010139	-1.4115	-0.0007139	0.59305	0.00029996	505.7906041545886	78.199	0.7854	78.199	77.924	78.709	0					30	18	2	0	0	0	0.028476	1	7886	7886		29.842	8.1392	1	1183800	+		38664	19252	31913	31936	41986	41986					0.06265964587294093
MPVLGPGVQG	10	Unmodified	_MPVLGPGVQG_					0	0	0		ENST00000341550.8_1_12:6760208-6760307:-|nuORF	ENST00000341550.8_1_12:6760208-6760307:-|nuORF	ENST00000341550.8_1_12:6760208-6760307:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.2054443359375	2	477.757495	953.500437	0.4656	0.00022244	-3.5607	-0.0017011	-3.0951	-0.0014787	477.75509824823143	112.49	0.60236	110.97	110.79	111.39	-1.5111					15	11	2	0	0	0	0.026982	1	10404	10404		23.042	5.6775	1	14956			38665	10568	31914	31937	41987	41987					0.021827290254123
MPVLGPGVQG	10	Unmodified	_MPVLGPGVQG_					0	0	0		ENST00000341550.8_1_12:6760208-6760307:-|nuORF	ENST00000341550.8_1_12:6760208-6760307:-|nuORF	ENST00000341550.8_1_12:6760208-6760307:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	477.757495	953.500437	0.1102	5.265E-05	-4.0578	-0.0019387	-3.9476	-0.001886	477.7556278567826	111.24	0.54188	111.1	110.88	111.42	-0.13961	0.064073	-0.00015687	NaN	21.96	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11720			38666	10568	31914	31937							0.021827290254123
MPVNLKQSIS	10	Unmodified	_MPVNLKQSIS_					0	0	0			REV__ENSG00000134243|ENST00000256637|SORT1	REV__ENSG00000134243|ENST00000256637|SORT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.3438720703125	2	558.807716	1115.60088	1.9509	0.0010902	-3.2946	-0.0018411	-1.3438	-0.00075091	558.8059553630399	111.19	0.53268	111.19	110.94	111.47	0					21	11	3	0	0	0	0.026681	1	12604	12604		44.377	15.207	1	259540	+		38667	19184	31915	31938	41988	41988					0.04770341288394775
MPVNLKQSIS	10	Unmodified	_MPVNLKQSIS_					0	0	0			REV__ENSG00000134243|ENST00000256637|SORT1	REV__ENSG00000134243|ENST00000256637|SORT1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	558.807716	1115.60088	0.91627	0.00051202	-4.1727	-0.0023317	-3.2564	-0.0018197	558.8054006563268	111.65	0.93619	111.51	111.23	112.16	-0.13961	0.053266	5.5798E-05	NaN	44.377	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38862	+		38668	19184	31915	31938							0.04770341288394775
MPVNLKQSIS	10	Unmodified	_MPVNLKQSIS_					0	0	0			REV__ENSG00000134243|ENST00000256637|SORT1	REV__ENSG00000134243|ENST00000256637|SORT1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	558.807716	1115.60088	1.2352	0.00069022	-4.4363	-0.0024791	-3.2012	-0.0017888	558.8051890641816	112.61	0.83671	111.54	111.17	112.01	-1.0753	0.078571	-0.00023884	NaN	44.377	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40266	+		38669	19184	31915	31938							0.04770341288394775
MPVNLKQSIS	10	Unmodified	_MPVNLKQSIS_					0	0	0			REV__ENSG00000134243|ENST00000256637|SORT1	REV__ENSG00000134243|ENST00000256637|SORT1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	558.807716	1115.60088	1.2036	0.00067258	-4.4852	-0.0025064	-3.2816	-0.0018338	558.8051905564392	113.05	0.9352	111.6	111.26	112.2	-1.4461	0.14128	-0.00029343	NaN	44.377	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44707	+		38670	19184	31915	31938							0.04770341288394775
MPVNRVAVQ	9	Unmodified	_MPVNRVAVQ_					0	0	0			REV__ENSG00000117597|ENST00000491415|UTP25	REV__ENSG00000117597|ENST00000491415|UTP25	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3152160644531	2	507.281669	1012.54878	0.23602	0.00011973	0.68052	0.00034521	0.91654	0.00046494	507.7841227523215	114.74	0.93043	113.35	112.99	113.92	-1.3977					29	17	2	0	0	0	0.027448	1	10631	10631		53.351	24.202	1	22707	+		38671	18360	31916	31939	41989	41989					0.04301222665299065
MPVPMTVVT	9	Unmodified	_MPVPMTVVT_					0	0	0			REV__TET1|p.K1722Rfs*51|1|0.02|ENSG00000138336|chr10:68686467-68686468|-/GGCTTTCTCC|frameshift_variant	REV__TET1|p.K1722Rfs*51|1|0.02|ENSG00000138336|chr10:68686467-68686468|-/GGCTTTCTCC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.77960205078125	2	487.756107	973.49766	1.1425	0.00055728	-1.1469	-0.00055941	-0.0043665	-2.1298E-06	487.75510075778016	67.992	0.68141	64.502	64.333	65.014	-3.4902					24	13	2	0	0	0	0.027456	1	5024	5024		47.916	18.766	1	82021	+		38672	19529	31917	31940	41990	41990					0.009851375762309544
MPVPMTVVT	9	Unmodified	_MPVPMTVVT_					0	0	0			REV__TET1|p.K1722Rfs*51|1|0.02|ENSG00000138336|chr10:68686467-68686468|-/GGCTTTCTCC|frameshift_variant	REV__TET1|p.K1722Rfs*51|1|0.02|ENSG00000138336|chr10:68686467-68686468|-/GGCTTTCTCC|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	487.756107	973.49766	-0.3611	-0.00017613	0.004046	1.9735E-06	-0.35705	-0.00017415	487.75573665834304	67.296	0.74237	64.635	64.495	65.238	-2.661	0.066476	0.00048532	NaN	47.916	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11301	+		38673	19529	31917	31940							0.009851375762309544
MPVPVPIPM	9	Unmodified	_MPVPVPIPM_					0	0	0			REV__ZMYM3|p.L1115Vfs*21|1|0.09|ENSG00000147130|chrX:71243918-71243919|-/TCCCCATCTCACGTTCAAGAAC|frameshift_variant	REV__ZMYM3|p.L1115Vfs*21|1|0.09|ENSG00000147130|chrX:71243918-71243919|-/TCCCCATCTCACGTTCAAGAAC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	490.7727966308594	2	490.769017	979.523481	1.2551	0.00061598	0.036727	1.8024E-05	1.2918	0.000634	490.76891226316144	98.366	0.75922	98.366	98.079	98.838	0					42	17	4	0	0	0	0.42921	1	10855	10855		49.211	5.094	1	892930	+		38674	20046	31918	31941	41991	41991					0.03290031818517036
MPVQAPGMPEA	11	Unmodified	_MPVQAPGMPEA_					0	0	0			REV__ENSG00000197128|ENST00000356584|ZNF772	REV__ENSG00000197128|ENST00000356584|ZNF772	MULTI-MSMS	OvCa99_classI_Rep5	1	564.2664794921875	2	564.264827	1126.5151	2.5685	0.0014493	-1.1367	-0.00064142	1.4318	0.00080791	564.2639262137353	90.528	0.5062	90.528	90.31	90.816	0					28	12	3	0	0	0	0.38665	1	9709	9709		62.107	9.1707	1	1917800	+		38675	22893	31919	31942	41992	41992					-0.04309566888764493
MPVSSGNTLT	10	Unmodified	_MPVSSGNTLT_					0	0	0		ENST00000487544.1_1_X:43703754-43741674:-|nuORF	ENST00000487544.1_1_X:43703754-43741674:-|nuORF	ENST00000487544.1_1_X:43703754-43741674:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	503.7500915527344	2	503.747324	1005.4801	0.69723	0.00035123	1.6249	0.00081852	2.3221	0.0011697	503.7480439131943	152.13	0.57036	152.13	151.83	152.4	0					27	11	3	0	0	0	0.70152	1	17802	17802		30.318	1.1682	1	259430			38676	12648	31920	31943	41993	41993					-0.02242486425052448
MPVTSILPMD	10	Unmodified	_MPVTSILPMD_					0	0	0		ENSG00000180245|ENST00000317735|RRH	ENSG00000180245|ENST00000317735|RRH	ENSG00000180245|ENST00000317735|RRH	MULTI-MSMS	OvCa9_classI_Rep2	2	552.279052734375	2	552.277403	1102.54025	1.0377	0.0005731	3.4164	0.0018868	4.4541	0.0024599	552.2789463348428	113.66	1.6789	113.54	113.02	114.7	-0.11777					68	33	3	0	0	0	0.55359	1	10807	10807		47.657	11.211	1	104970			38677	7863	31921	31944	41994	41994					-0.006915120861776813
MPVVHHTSP	9	Unmodified	_MPVVHHTSP_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;ABCA13|p.H2244Nfs*10|1|0.05|ENSG00000179869|chr7:48276379-48276380|-/TAACCTTATCTTGAACAATATAAGGTTAATGAAATTCATTATA|frameshift_variant;ABCA13|p.L1709Afs*18|1|0.2|ENSG00000179869|chr7:48274789-48274790|-/A|frameshift_variant;ABCA13|p.S1641P|1|0.06|ENSG00000179869|chr7:48274587-48274587|T/C|missense_variant	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.7940673828125	2	502.752744	1003.49094	-0.48602	-0.00024435	2.233	0.0011226	1.747	0.0008783	502.75367092230533	48.085	1.0249	44.977	44.684	45.709	-3.1077					42	19	3	0	0	0	0.027462	1	2689	2689		40.573	16.37	1	145250			38678	7844	31922	31945	41995	41995					-0.010670392601241474
MPWKPQLFHLD	11	Unmodified	_MPWKPQLFHLD_					0	0	0		nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;OSBPL5|p.P786Sfs*56|1|0.44|ENSG00000021762|chr11:3090600-3090601|-/CT|frameshift_variant;ENSG00000021762|ENST00000263650|OSBPL5	nc|ENSG00000021762|Q9H0X9-3|OSBPL5	nc|ENSG00000021762|Q9H0X9-3|OSBPL5	MULTI-SECPEP	OvCa9_classI_Rep3	3	470.79693603515625	3	471.244552	1410.71183	0.68785	0.00032414	3.0917	0.0014569	3.7795	0.0017811	471.24593189919705	79.962	1.5262	77.622	77.206	78.732	-2.3399					74	29	4	0	0	0	0.025714	1	4335	4335		31.634	9.8538	1	170760			38679	1028	31923	31946	41996	41996					0.022899809964656015
MPYEVLVHKG	10	Unmodified	_MPYEVLVHKG_					0	0	0			REV__BLVRA|p.E139Dfs*12|1|0.1|ENSG00000106605|chr7:43800528-43800529|-/TGGCCCACTGCAATTTCTGCCTCCCAGGTTCT|frameshift_variant	REV__BLVRA|p.E139Dfs*12|1|0.1|ENSG00000106605|chr7:43800528-43800529|-/TGGCCCACTGCAATTTCTGCCTCCCAGGTTCT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.3278198242188	2	586.810259	1171.60597	-1.1469	-0.00067299	4.4217	0.0025947	3.2749	0.0019217	586.8123641279401	70.202	0.96907	70.202	69.712	70.681	0					52	23	3	0	0	0	0.027117	1	6665	6665		6.3127	0	1	2861300	+		38680	15703	31924	31947	41997	41997					0.027026451509982508
MPYRAILLL	9	Unmodified	_MPYRAILLL_					0	0	0		tr|A0A553SPU6|A0A553SPU6_NIACICarbamoyl-phosphatesynthaselargesubunitOS=NialliacirculansOX=1397GN=CEQ21_10255PE=4SV=1	tr|A0A553SPU6|A0A553SPU6_NIACICarbamoyl-phosphatesynthaselargesubunitOS=NialliacirculansOX=1397GN=CEQ21_10255PE=4SV=1	tr|A0A553SPU6|A0A553SPU6_NIACICarbamoyl-phosphatesynthaselargesubunitOS=NialliacirculansOX=1397GN=CEQ21_10255PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.3057861328125	2	545.328088	1088.64162	1.0942	0.00059667	1.6766	0.00091427	2.7707	0.0015109	545.3289609901788	109.53	0.85018	109.53	109.28	110.13	0					24	18	2	0	0	0	0.027462	1	12466	12466		45.952	0	1	489660			38681	34088	31925	31948	41998	41998					0.10084727398680116
MQAQLQYSG	9	Unmodified	_MQAQLQYSG_					0	0	0			REV__nc|ENSG00000101940|Q9H1Z4-2|WDR13	REV__nc|ENSG00000101940|Q9H1Z4-2|WDR13	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.8145141601562	2	513.239667	1024.46478	-0.47208	-0.00024229	3.8372	0.0019694	3.3651	0.0017271	513.2412900076378	74.975	1.1973	73.004	72.324	73.521	-1.9711					37	22	2	0	0	0	0.027441	1	6160	6160		49.442	0	1	38468	+		38682	17527	31926	31949	41999	41999					-0.04647353222264883
MQDRKESR	8	Unmodified	_MQDRKESR_					0	0	0		ENST00000465522.5_1_2:182322575-182339690:+|nuORF	ENST00000465522.5_1_2:182322575-182339690:+|nuORF	ENST00000465522.5_1_2:182322575-182339690:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.25927734375	2	525.261465	1048.50838	1.914	0.0010053	-2.6045	-0.001368	-0.69052	-0.0003627	525.2599110724199	136.17	1.1696	134.63	134.25	135.42	-1.5436					55	23	3	0	0	0	0.59904	1	13220	13220		64.207	12.872	1	96930			38683	12273	31927	31950	42000	42000					-0.013937437251115625
MQELQDQSL	9	Unmodified	_MQELQDQSL_					0	0	0			REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40	REV__nc|ENSG00000141519|Q4G0X9-3|CCDC40	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.2525634765625	2	546.255514	1090.49647	-1.0578	-0.00057781	-2.4113	-0.0013172	-3.4691	-0.001895	546.2540824199572	120.78	3.5873	119.44	118.98	122.56	-1.3479					124	70	4	0	0	0	0.52629	1	11404	11404		40.058	4.9061	1	370910	+		38684	19743	31928	31951	42001	42001					-0.04515405258962346
MQEVETLTSH	10	Unmodified	_MQEVETLTSH_					0	0	0		ENST00000582590.1_1_17:26731487-26733159:-|nuORF;nc|ENSG00000076351|Q96NT5-2|SLC46A1;ENSG00000076351|ENST00000612814|SLC46A1	ENST00000582590.1_1_17:26731487-26733159:-|nuORF	ENST00000582590.1_1_17:26731487-26733159:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.2250366210938	2	587.774071	1173.53359	2.7959	0.0016434	-0.1948	-0.0001145	2.6011	0.0015289	587.7739737325571	115.95	0.36803	115.95	115.73	116.09	0					11	7	2	0	0	0	0.026635	1	13256	13256		47.657	0	1	64488			38685	1555	31929	31952	42002	42002					-0.04623733713196998
MQFFCIRKAF	10	Unmodified	_MQFFCIRKAF_					0	0	0		ENST00000400097.5_1_15:25101777-25101828:+|nuORF	ENST00000400097.5_1_15:25101777-25101828:+|nuORF	ENST00000400097.5_1_15:25101777-25101828:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	430.2741394042969	3	430.887711	1289.6413	-0.6919	-0.00029813	0.89787	0.00038688	0.20598	8.8752E-05	430.88898178763753	108.57	1.1078	106.84	106.42	107.52	-1.7256					33	21	3	0	0	0	0.027142	1	10006	10006		20.837	1.5745	1	21660			38686	11403	31930	31953	42003	42003					0.008069844071769694
MQFGLGLLV	9	Unmodified	_MQFGLGLLV_					0	0	0			REV__C9orf3-HIATL1|1|fusion	REV__C9orf3-HIATL1|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.2486877441406	2	489.278063	976.541574	0.35885	0.00017558	3.5458	0.0017349	3.9047	0.0019105	489.2797211492054	72.382	0.36679	72.382	72.125	72.492	0					14	8	2	0	0	0	0.027462	1	7015	7015		40.573	12.318	1	311810	+		38687	15721	31931	31954	42004	42004					0.052364900648967705
MQFGLGLLV	9	Unmodified	_MQFGLGLLV_					0	0	0			REV__C9orf3-HIATL1|1|fusion	REV__C9orf3-HIATL1|1|fusion	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	489.278063	976.541574	0.33098	0.00016194	1.0814	0.00052909	1.4123	0.00069103	489.2786081761892	75.594	0.6309	72.655	72.449	73.08	-2.9389	0.13686	-0.0013387	NaN	40.573	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59404	+		38688	15721	31931	31954							0.052364900648967705
MQFIYFYH	8	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))QFIYFYH_		M(1)QFIYFYH		M(57)QFIYFYH	1	0	1		ENST00000358278.7_2_15:63363443-63363623:+|nuORF	ENST00000358278.7_2_15:63363443-63363623:+|nuORF	ENST00000358278.7_2_15:63363443-63363623:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	603.7703247070312	2	603.76806	1205.52157	0.77682	0.00046902	3.2745	0.001977	4.0513	0.0024461	603.7696100943778	160.6	1.4039	160.6	160.11	161.51	0					79	27	4	0	0	0	0.63104	1	18828	18828		57.453	9.537	1	411500			38689	10732	31932	31955	42005	42005		300			-0.07297305665747444
MQFYSQQILL	10	Unmodified	_MQFYSQQILL_					0	0	0			REV__ENST00000515235.6_1_5:118872171-118961665:+|nuORF	REV__ENST00000515235.6_1_5:118872171-118961665:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	635.8290405273438	2	635.828649	1269.64274	1.0952	0.00069637	0.77256	0.00049122	1.8678	0.0011876	635.8293230326714	158.82	0.53041	158.82	158.61	159.14	0					16	10	2	0	0	0	0.65434	1	18618	18618		35.618	2.8059	1	120470	+		38690	26842	31933	31956	42006	42006					0.018708969769477335
MQGMPVRNT	9	Unmodified	_MQGMPVRNT_					0	0	0		nc|ENSG00000057935|Q9BTC8-2|MTA3;ENSG00000057935|ENST00000405094|MTA3;ENST00000467925.5_1_2:42935083-42946163:+|nuORF	nc|ENSG00000057935|Q9BTC8-2|MTA3	nc|ENSG00000057935|Q9BTC8-2|MTA3	MULTI-MSMS	OvCa99_classI_Rep5	1	517.248291015625	2	517.249511	1032.48447	0.45599	0.00023586	-2.7882	-0.0014422	-2.3322	-0.0012063	517.2479661927684	158.92	0.58511	158.92	158.65	159.24	0					17	11	2	0	0	0	0.24951	1	18634	18634		68.787	0	1	109360			38691	1239	31934	31957	42007	42007					-0.03047300483149229
MQHCEFLV	8	Unmodified	_MQHCEFLV_					0	0	0			REV__nc|ENSG00000135709|O60268-2|KIAA0513	REV__nc|ENSG00000135709|O60268-2|KIAA0513	MULTI-SECPEP	OvCa9_classI_Rep4_	4	504.2923583984375	2	503.72788	1005.44121	2.1392	0.0010776	-3.9414	-0.0019854	-1.8022	-0.0009078	503.7257505670469	130.53	0.88417	129.05	128.56	129.45	-1.4779					24	17	2	0	0	0	0.028476	1	12482	12482		26.796	1.3459	1	14326	+		38692	19313	31935	31958	42008	42008					-0.061294902604345225
MQIELARYI	9	Unmodified	_MQIELARYI_					0	0	0		ENSG00000055163|ENST00000620254|CYFIP2;nc|ENSG00000055163|Q96F07|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000055163|ENST00000620254|CYFIP2;ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	OvCa99_classI_Rep5	1	568.8123779296875	2	568.810259	1135.60597	1.589	0.00090385	1.2556	0.00071419	2.8446	0.001618	568.8110393423763	119.77	0.77862	119.77	119.52	120.3	0					38	18	3	0	0	0	0.07097	1	13747	13747		106.68	31.64	1	1066300			38693	1221;9559	31936	31959	42009	42009					0.04358645151000928
MQIGDPEEAN	10	Unmodified	_MQIGDPEEAN_					0	0	0		ENST00000398532.8_2_17:38290567-38290615:+|nuORF	ENST00000398532.8_2_17:38290567-38290615:+|nuORF	ENST00000398532.8_2_17:38290567-38290615:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	551.8486938476562	2	552.237321	1102.46009	-1.3013	-0.0007186	3.0852	0.0017038	1.7839	0.00098515	553.2417830129174	101.83	0.57841	100.31	100.06	100.63	-1.5211					17	10	3	0	0	0	0.026573	1	7004	7004		53.089	0	1	14800			38694	11371	31937	31960	42010	42010					-0.08704282155690635
MQIHVVQKRK	10	Unmodified	_MQIHVVQKRK_					0	0	0			REV__ENST00000262467.9_2_17:5404862-5404970:-|nuORF	REV__ENST00000262467.9_2_17:5404862-5404970:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	422.9192199707031	3	422.920291	1265.73905	-0.42407	-0.00017935	-2.6187	-0.0011075	-3.0428	-0.0012869	422.9191804294928	74.511	2.5984	72.54	72.114	74.713	-1.9711					157	49	5	0	0	0	0.57535	1	6144	6144		45.022	4.964	1	1026300	+		38695	23975	31938	31961	42011	42011					0.11680509327538857
MQILDKKVQ	9	Unmodified	_MQILDKKVQ_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	OvCa99_classI_Rep5	1	551.8193969726562	2	551.818084	1101.62162	-2.0884	-0.0011524	-3.1518	-0.0017392	-5.2402	-0.0028917	551.8162910762125	104.31	1.7126	104.31	103.55	105.27	0					113	39	4	0	0	0	0.033166	1	11718	11718		132.76	8.1636	1	2988300	+		38696	22731	31939	31962	42012	42012					0.07486931668063335
MQILTVITTIF	11	Unmodified	_MQILTVITTIF_					0	0	0		tr|A0A553SFY3|A0A553SFY3_NIACIMagnesiumtransportproteinCorAOS=NialliacirculansOX=1397GN=corAPE=3SV=1	tr|A0A553SFY3|A0A553SFY3_NIACIMagnesiumtransportproteinCorAOS=NialliacirculansOX=1397GN=corAPE=3SV=1	tr|A0A553SFY3|A0A553SFY3_NIACIMagnesiumtransportproteinCorAOS=NialliacirculansOX=1397GN=corAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	427.5824890136719	3	427.249192	1278.72575	1.8001	0.00076908	-3.976	-0.0016987	-2.1759	-0.00092964	427.24738027523273	28.155	0.61012	25.445	25.196	25.806	-2.7097					26	12	3	0	0	0	0.69424	1	558	558		31.634	9.0727	1	45883			38697	33093	31940	31963	42013	42013					0.09753213704902919
MQIVEELHA	9	Unmodified	_MQIVEELHA_					0	0	0		ENSG00000116668|ENST00000367500|SWT1	ENSG00000116668|ENST00000367500|SWT1	ENSG00000116668|ENST00000367500|SWT1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.8123168945312	2	535.270967	1068.52738	-1.7774	-0.00095141	-0.10245	-5.4836E-05	-1.8799	-0.0010062	535.2715114146783	92.643	0.65646	90.136	89.806	90.463	-2.5072					16	12	2	0	0	0	0.027164	1	8065	8065		90.777	0	1	34708			38698	3192	31941	31964	42014	42014					-0.004142071540627512
MQKAMNLEK	9	Unmodified	_MQKAMNLEK_					0	0	0			REV__ENST00000361368.6_1_7:98625224-98626022:-|nuORF	REV__ENST00000361368.6_1_7:98625224-98626022:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.782958984375	2	546.780644	1091.54674	3.705	0.0020258	-0.89176	-0.0004876	2.8133	0.0015382	546.7800033528225	131.81	1.3099	130.31	129.98	131.29	-1.5015					60	25	3	0	0	0	0.50149	1	12728	12728		42.396	4.5846	1	73348	+		38699	24850	31942	31965	42015	42015					0.004624258651801938
MQKDLQKSRE	10	Unmodified	_MQKDLQKSRE_					0	0	0		nc|ENSG00000112561|P19484-2|TFEB;ENSG00000112561|ENST00000373033|TFEB	nc|ENSG00000112561|P19484-2|TFEB	nc|ENSG00000112561|P19484-2|TFEB	MULTI-MSMS	OvCa9_classI_Rep2	2	631.828857421875	2	631.829711	1261.64487	-0.75971	-0.00048001	0.92665	0.00058549	0.16694	0.00010548	631.8302084543957	95.793	1.8791	94.765	94.219	96.098	-1.0281					113	37	5	0	0	0	0.39718	3	8633	8615;8626;8633		68.846	7.1549	1	755930			38700	2910	31943	31966	42016;42017;42018	42018					0.024513257147191325
MQKDLQKSRE	10	Unmodified	_MQKDLQKSRE_					0	0	0		nc|ENSG00000112561|P19484-2|TFEB;ENSG00000112561|ENST00000373033|TFEB	nc|ENSG00000112561|P19484-2|TFEB	nc|ENSG00000112561|P19484-2|TFEB	MULTI-MSMS	OvCa9_classI_Rep3	3	631.8303833007812	2	631.829711	1261.64487	-0.38857	-0.00024551	0.68051	0.00042997	0.29194	0.00018446	631.8300640239108	96.734	2.0306	94.905	94.42	96.451	-1.8286					120	39	5	0	0	0	0.20836	3	6366	6366;6378;6384		93.143	10.393	1	1113600			38701	2910	31943	31966	42019;42020;42021	42019					0.024513257147191325
MQKERAAHK	9	Unmodified	_MQKERAAHK_					0	0	0			REV__nc|ENSG00000185480|Q9NWS1-6|PARPBP	REV__nc|ENSG00000185480|Q9NWS1-6|PARPBP	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.2626342773438	2	549.795475	1097.5764	1.7334	0.00095302	-1.8805	-0.0010339	-0.14714	-8.0897E-05	549.7941395338546	92.057	1.1352	92.057	91.542	92.677	0					36	26	2	0	0	0	0.027462	1	9942	9942		37.812	11.015	1	650840	+		38702	22507	31944	31967	42022	42022					0.031511259255239565
MQKINWVE	8	Unmodified	_MQKINWVE_					0	0	0			REV__ENST00000469930.1_1_7:140534396-140624503:-|nuORF	REV__ENST00000469930.1_1_7:140534396-140624503:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.2924194335938	2	524.268227	1046.5219	-0.91197	-0.00047812	-1.336	-0.00070045	-2.248	-0.0011786	524.2668695955016	117.04	0.54359	116.91	116.72	117.26	-0.12869					11	10	2	0	0	0	0.028476	1	11193	11193		64.207	0	1	20867	+		38703	20530	31945	31968	42023	42023					0.000501140541246059
MQKKAVAI	8	Oxidation (M)	_M(Oxidation (M))QKKAVAI_		M(1)QKKAVAI		M(58)QKKAVAI	0	0	1		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	OvCa99_classI_Rep5	1	452.76800537109375	2	452.767863	903.521173	0.16981	7.6886E-05	-0.3691	-0.00016711	-0.19928	-9.0229E-05	452.76761230247484	33	2.0381	33	32.453	34.491	0					104	41	4	0	0	0	0.62934	1	1475	1475		57.811	6.4758	1	772630			38704	5448	31946	31969	42024	42024		181			0.065553194050608
MQKKHNEVV	9	Unmodified	_MQKKHNEVV_					0	0	0			REV__BNIP1|p.E80V|1|0.13|ENSG00000113734|chr5:173154383-173154383|A/T|missense_variant	REV__BNIP1|p.E80V|1|0.13|ENSG00000113734|chr5:173154383-173154383|A/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.2630615234375	2	556.797683	1111.58081	0.66147	0.00036831	-4.0399	-0.0022494	-3.3785	-0.0018811	556.7955533942829	72.638	0.62383	72.638	72.412	73.035	0					24	15	3	0	0	0	0.027462	1	7073	7073		42.396	19.354	1	663000	+		38705	15705	31947	31970	42025	42025					0.02948590348455582
MQKVLQGIE	9	Unmodified	_MQKVLQGIE_					0	0	0			REV__ENSG00000126088|ENST00000246337|UROD	REV__ENSG00000126088|ENST00000246337|UROD	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.2890014648438	2	523.289159	1044.56377	-0.58138	-0.00030423	-3.1707	-0.0016592	-3.7521	-0.0019634	523.2872096280854	96.142	1.4069	93.717	93.254	94.661	-2.4256					59	27	3	0	0	0	0.44568	1	8488	8488		47.657	0	1	600950	+		38706	18771	31948	31971	42026	42026					0.04326669742658851
MQLAPVPPVP	10	Unmodified	_MQLAPVPPVP_					0	0	0			REV__ENST00000228425.10_2_12:27845765-27845849:+|nuORF	REV__ENST00000228425.10_2_12:27845765-27845849:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.2604370117188	2	524.79662	1047.57869	1.989	0.0010438	3.0583	0.001605	5.0474	0.0026488	524.7953992783144	136.18	0.97861	134.64	134.15	135.13	-1.5436					35	19	3	0	0	0	0.026939	1	13207	13207		31.955	8.9124	1	21697	+		38707	23774	31949	31972	42027	42027					0.05680161610621326
MQLAPVPPVP	10	Unmodified	_MQLAPVPPVP_					0	0	0			REV__ENST00000228425.10_2_12:27845765-27845849:+|nuORF	REV__ENST00000228425.10_2_12:27845765-27845849:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	524.79662	1047.57869	-0.045305	-2.3776E-05	0.2111	0.00011079	0.1658	8.701E-05	524.7962177674183	135.08	0.73329	134.85	134.34	135.08	-0.22697	0.10777	-0.00048609	NaN	31.955	23	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14647	+		38708	23774	31949	31972							0.05680161610621326
MQLKILVSAS	10	Unmodified	_MQLKILVSAS_					0	0	0		ENSG00000164935|ENST00000297581|DCSTAMP	ENSG00000164935|ENST00000297581|DCSTAMP	ENSG00000164935|ENST00000297581|DCSTAMP	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3168334960938	2	545.32046	1088.62637	-2.8527	-0.0015556	-4.0579	-0.0022129	-6.9106	-0.0037685	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.69073	1	11807	11807		31.53	3.4483	1	337600			38709	6502	31950	31973	42028	42028					0.08559815810826876
MQLMDESR	8	Unmodified	_MQLMDESR_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.2773132324219	2	505.225702	1008.43685	0.96728	0.0004887	-1.4275	-0.0007212	-0.46019	-0.0002325	505.2249080029115	85.487	0.7338	82.84	82.66	83.394	-2.6463					24	14	2	0	0	0	0.028476	1	7243	7243		79.451	10.664	1	61689	+		38710	16701	31951	31974	42029	42029					-0.06702999473998261
MQLREIEHA	9	Unmodified	_MQLREIEHA_					0	0	0			REV__ENSG00000104228|ENST00000305364|TRIM35	REV__ENSG00000104228|ENST00000305364|TRIM35	MULTI-MSMS	OvCa99_classI_Rep5	1	564.2909545898438	2	563.787315	1125.56008	0.83306	0.00046967	1.8795	0.0010596	2.7126	0.0015293	563.7881553485178	162.06	0.86394	162.06	161.61	162.48	0					32	13	3	0	0	0	0.5811	1	18997	18997		34.173	2.2177	1	128450	+		38711	17653	31952	31975	42030	42030					0.0023199996876428486
MQLRQLDMKRI	11	Unmodified	_MQLRQLDMKRI_					0	0	0		ENST00000560980.5_1_15:71197061-71276639:+|nuORF;nc|ENSG00000137821|Q8IUZ0-3|LRRC49;nc|ENSG00000137821|Q8IUZ0-4|LRRC49;ENSG00000137821|ENST00000260382|LRRC49;nc|ENSG00000137821|Q8IUZ0-2|LRRC49	ENST00000560980.5_1_15:71197061-71276639:+|nuORF	ENST00000560980.5_1_15:71197061-71276639:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	477.93487548828125	3	477.935613	1430.78501	1.0304	0.00049248	-2.0678	-0.0009883	-1.0374	-0.00049581	477.9346027351994	70.553	2.1532	67.834	67.549	69.702	-2.7196					131	42	5	0	0	0	0.71582	1	3259	3259		24.232	1.6702	1	1423100			38712	4625	31953	31976	42031	42031					0.0868478644742936
MQLSPAVAKD	10	Unmodified	_MQLSPAVAKD_					0	0	0		ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	MULTI-MSMS	OvCa99_classI_Rep5	1	530.2791748046875	2	530.278792	1058.54303	0.79861	0.00042349	-3.0611	-0.0016233	-2.2625	-0.0011998	530.2769826606338	132.06	0.94147	132.06	131.81	132.75	0					36	19	3	0	0	0	0.43433	1	15360	15360		63.534	12.341	1	196360			38713	5831	31954	31977	42032	42032					0.016100793629675536
MQLSPAVAKD	10	Unmodified	_MQLSPAVAKD_					0	0	0		ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	530.278792	1058.54303	-0.33535	-0.00017783	-3.9735	-0.0021071	-4.3088	-0.0022849	530.2762635853339	133.36	0.29269	132.24	132.07	132.37	-1.1249	0.090031	-0.00088107	NaN	63.534	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10793			38714	5831	31954	31977							0.016100793629675536
MQLTRRGQL	9	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))QLTRRGQL_		M(1)QLTRRGQL		M(67)QLTRRGQL	1	0	1		ENST00000368019.5_1_1:161011186-161011605:-|nuORF	ENST00000368019.5_1_1:161011186-161011605:-|nuORF	ENST00000368019.5_1_1:161011186-161011605:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	580.8133544921875	2	580.813864	1159.61318	2.2499	0.0013068	-2.7558	-0.0016006	-0.50594	-0.00029386	580.8119692047931	99.32	0.61807	99.32	99.076	99.694	0					23	14	2	0	0	0	0.26076	1	11005	11005		67.494	21.521	1	7372800			38715	10859	31955	31978	42033	42033		304			0.039753777514533795
MQLVSHFDRL	10	Unmodified	_MQLVSHFDRL_					0	0	0			REV__nc|ENSG00000008226|Q9Y238-2|DLEC1	REV__nc|ENSG00000008226|Q9Y238-2|DLEC1	MULTI-MSMS	OvCa99_classI_Rep5	1	415.88470458984375	3	415.885135	1244.63358	-0.29871	-0.00012423	2.0133	0.00083732	1.7146	0.00071309	415.88596955768884	27.909	0.79793	27.909	27.691	28.489	0					42	15	5	0	0	0	0.40664	1	858	858		53.597	0	1	880520	+		38716	16447	31956	31979	42034	42034					0.021045484112619306
MQPEEPDYL	9	Unmodified	_MQPEEPDYL_					0	0	0		nc|ENSG00000156313|Q92834-4|RPGR;nc|ENSG00000156313|Q92834-2|RPGR;nc|ENSG00000156313|Q92834|RPGR;nc|ENSG00000156313|Q92834-3|RPGR;ENSG00000156313|ENST00000645032|RPGR	nc|ENSG00000156313|Q92834-4|RPGR	nc|ENSG00000156313|Q92834-4|RPGR	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.2804565429688	2	561.244615	1120.47468	1.7491	0.00098169	-1.6384	-0.00091952	0.11077	6.2172E-05	561.2435257568106	138.93	0.48441	138.93	138.74	139.22	0					19	9	3	0	0	0	0.027438	1	16228	16228		56.434	5.2411	1	56550			38717	15113	31957	31980	42035	42035					-0.08074210007544025
MQPGTQDTLP	10	Unmodified	_MQPGTQDTLP_					0	0	0			REV__ENSG00000137766|ENST00000260323|UNC13C	REV__ENSG00000137766|ENST00000260323|UNC13C	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.3407592773438	2	544.258056	1086.50156	1.1569	0.00062964	1.4058	0.00076512	2.5627	0.0013948	544.2584849078869	145.93	0.30042	145.93	145.78	146.08	0					9	5	2	0	0	0	0.026635	1	17078	17078		56.721	10.749	1	11444	+		38718	19474	31958	31981	42036	42036					-0.038231013963468286
MQPICNWDP	9	Unmodified	_MQPICNWDP_					0	0	0			REV__ENSG00000169933|ENST00000675598|FRMPD4	REV__ENSG00000169933|ENST00000675598|FRMPD4	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.8395385742188	2	552.23607	1102.45759	1.5435	0.00085238	-2.8627	-0.0015809	-1.3192	-0.00072849	552.2343738246585	138.2	0.24155	138.2	138.06	138.31	0					7	4	2	0	0	0	0.027462	1	16110	16110		40.778	7.2626	1	31004	+		38719	21500	31959	31982	42037	42037					-0.08954409094349103
MQPLKGSLM	9	Unmodified	_MQPLKGSLM_					0	0	0		ENST00000321599.8_2_3:49762771-49762981:-|nuORF	ENST00000321599.8_2_3:49762771-49762981:-|nuORF	ENST00000321599.8_2_3:49762771-49762981:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.7924499511719	2	502.767006	1003.51946	-1.3225	-0.00066489	-3.4201	-0.0017195	-4.7426	-0.0023844	502.7653701786944	48.461	0.69918	45.701	45.379	46.078	-2.7603					20	13	3	0	0	0	0.027462	1	2976	2976		35.618	0	1	31769			38720	10376	31960	31983	42038	42038					0.017839423248005915
MQQSTIYDN	9	Unmodified	_MQQSTIYDN_					0	0	0			REV__ENSG00000196498|ENST00000405201|NCOR2;REV__nc|ENSG00000141027|O75376-2|NCOR1;REV__ENST00000470782.5_1_17:15935612-15971511:-|nuORF	REV__ENSG00000196498|ENST00000405201|NCOR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.2626342773438	2	550.239864	1098.46517	1.7304	0.00095215	-3.9171	-0.0021554	-2.1867	-0.0012032	550.2391394519356	92.022	0.33989	92.022	91.92	92.26	0					12	7	3	0	0	0	0.027462	1	9942	9942		25.574	8.2091	1	161180	+		38721	22837;19717;26267	31961	31984	42039	42039					-0.08011978293075117
MQRMHTEIV	9	Unmodified	_MQRMHTEIV_					0	0	0			REV__ENSG00000172469|ENST00000358812|MANEA	REV__ENSG00000172469|ENST00000358812|MANEA	MULTI-MSMS	OvCa9_classI_Rep4_	4	572.78662109375	2	572.783718	1143.55288	-0.7014	-0.00040175	3.0177	0.0017285	2.3163	0.0013267	572.7852955228963	103.46	2.3476	101.32	100.63	102.98	-2.1388					117	43	3	0	0	0	0.24951	1	9364	9364		68.787	2.3575	1	1167800	+		38722	21702	31962	31985	42040	42040					-0.013150559033192621
MQRRALEG	8	Unmodified	_MQRRALEG_					0	0	0			REV__nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	REV__nc|ENSG00000136848|Q5VWQ8-3|DAB2IP	MULTI-MSMS	OvCa99_classI_Rep5	1	480.75445556640625	2	480.755818	959.497083	-0.78223	-0.00037606	-4.1546	-0.0019974	-4.9368	-0.0023734	480.7536440331839	49.757	0.69482	49.757	49.55	50.245	0					35	15	3	0	0	0	0.50747	1	3736	3736		76.774	1.7308	1	2034200	+		38723	19411	31963	31986	42041	42041					0.01571478971391116
MQSDDLKLAE	10	Unmodified	_MQSDDLKLAE_					0	0	0			REV__ENSG00000124201|ENST00000396105|ZNFX1	REV__ENSG00000124201|ENST00000396105|ZNFX1	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.312255859375	2	575.276446	1148.53834	-0.8447	-0.00048594	-1.1461	-0.00065933	-1.9908	-0.0011453	575.2771114490813	99.217	0.45888	97.532	97.165	97.624	-1.685					13	8	2	0	0	0	0.027376	1	6640	6640		120.87	33.172	1	13797	+		38724	18672	31964	31987	42042	42042					-0.029988495704628804
MQSLEEDKNR	10	Unmodified	_MQSLEEDKNR_					0	0	0		nc|ENSG00000140859|Q9BVG8-4|KIFC3;nc|ENSG00000140859|Q9BVG8-5|KIFC3;ENSG00000140859|ENST00000445690|KIFC3;nc|ENSG00000140859|Q9BVG8|KIFC3;nc|ENSG00000140859|Q9BVG8-6|KIFC3	nc|ENSG00000140859|Q9BVG8-4|KIFC3	nc|ENSG00000140859|Q9BVG8-4|KIFC3	MULTI-MSMS	OvCa9_classI_Rep3	3	625.2945556640625	2	625.295701	1248.57685	-4.4959	-0.0028113	1.5373	0.00096127	-2.9586	-0.00185	625.2965199042848	153.36	0.97864	152.39	152.03	153.01	-0.97301					42	20	3	0	0	0	0.79186	1	13141	13141		9.7057	0	1	67090			38725	4879	31965	31988	42043	42043					-0.037495439359418015
MQSYRSIQEH	10	Unmodified	_MQSYRSIQEH_					0	0	0			REV__ENST00000557001.5_1_14:52037074-52042621:+|nuORF	REV__ENST00000557001.5_1_14:52037074-52042621:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	639.7992553710938	2	639.798411	1277.58227	1.4092	0.00090163	-2.3007	-0.001472	-0.89145	-0.00057035	639.7967656549084	150.33	1.5099	150.33	149.94	151.45	0					61	29	4	0	0	0	0.64697	1	17635	17635		36.447	1.2947	1	1620400	+		38726	27568	31966	31989	42044	42044					-0.04541820353460935
MQTDPNWSN	9	Unmodified	_MQTDPNWSN_					0	0	0		nc|ENSG00000163050|Q8NI60-4|COQ8A;ENST00000485462.5_1_1:227165121-227174435:+|nuORF;nc|ENSG00000163050|Q8NI60-3|COQ8A;ENSG00000163050|ENST00000366777|COQ8A;nc|ENSG00000163050|Q8NI60-2|COQ8A;ENST00000478406.5_1_1:227171537-227174435:+|nuORF	nc|ENSG00000163050|Q8NI60-4|COQ8A	nc|ENSG00000163050|Q8NI60-4|COQ8A	MULTI-SECPEP	OvCa9_classI_Rep3	3	545.791015625	2	546.724381	1091.43421	-1.5554	-0.00085038	1.5559	0.00085064	0.00046631	2.5495E-07	546.7253512660415	92.17	0.23911	90.146	89.941	90.18	-2.0241					5	4	2	0	0	0	0.027462	1	5798	5798		41.427	15.853	1	39645			38727	6258	31967	31990	42045	42045					-0.1078513160730381
MQTYLNCH	8	Unmodified	_MQTYLNCH_					0	0	0		ENST00000497498.1_1_7:26242554-26242587:+|nuORF	ENST00000497498.1_1_7:26242554-26242587:+|nuORF	ENST00000497498.1_1_7:26242554-26242587:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.27593994140625	2	505.215137	1008.41572	-1.5616	-0.00078897	4.2029	0.0021234	2.6412	0.0013344	505.2172939609118	85.392	0.79928	83.172	82.986	83.785	-2.2204					25	15	2	0	0	0	0.028476	1	5006	5006		60.972	0	1	36642			38728	12808	31968	31991	42046	42046					-0.0881496478285726
MQVLQCAAGGN	11	Unmodified	_MQVLQCAAGGN_					0	0	0		ENSG00000204897|ENST00000312150|KRT25;CON__Q7Z3Z0	ENSG00000204897|ENST00000312150|KRT25	ENSG00000204897|ENST00000312150|KRT25	MULTI-MSMS	OvCa9_classI_Rep2	2	546.2531127929688	2	546.252251	1090.48995	-1.4524	-0.00079336	3.9958	0.0021827	2.5434	0.0013893	546.254261928264	119.84	1.7272	119.67	119.3	121.03	-0.17138					86	34	4	0	0	0	0.68021	1	11550	11550		36.447	6.129	1	216370		+	38729	658	31969	31992	42047	42047					-0.051676216913392636
MQVLRANT	8	Unmodified	_MQVLRANT_					0	0	0			REV__nc|ENSG00000102900|Q8N1F7-2|NUP93	REV__nc|ENSG00000102900|Q8N1F7-2|NUP93	MULTI-SECPEP	OvCa99_classI_Rep5	1	466.7604064941406	2	466.752744	931.490935	-0.6599	-0.00030801	4.0996	0.0019135	3.4397	0.0016055	466.75469611515035	59.552	0.46178	59.552	59.377	59.839	0					15	11	2	0	0	0	0.028476	1	5165	5165		30.504	0	1	549280	+		38730	17578	31970	31993	42048	42048					0.02244960739869839
MQVVLAVLN	9	Unmodified	_MQVVLAVLN_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	OvCa99_classI_Rep5	1	493.7895812988281	2	493.788795	985.563038	-0.45135	-0.00022287	3.9599	0.0019554	3.5086	0.0017325	493.79074461659474	35.451	1.1086	35.451	35.149	36.257	0					51	23	5	0	0	0	0.36502	1	1805	1805		55.504	0	1	3259200			38731	1754	31971	31994	42049	42049					0.06967875093596376
MRAVPLEAVSN	11	Unmodified	_MRAVPLEAVSN_					0	0	0		ENST00000463516.5_1_7:45003626-45005995:-|nuORF	ENST00000463516.5_1_7:45003626-45005995:-|nuORF	ENST00000463516.5_1_7:45003626-45005995:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	593.8187866210938	2	593.816073	1185.61759	1.0516	0.00062444	4.3071	0.0025576	5.3587	0.0031821	593.8186234949121	127.89	1.6942	126.8	126.51	128.21	-1.0933					75	33	4	0	0	0	0.14191	2	10044	10044;10067		88.177	10.859	1	292070			38732	12227	31972	31995	42050;42051	42050					0.03220842174346217
MRDGYKKIY	9	Unmodified	_MRDGYKKIY_					0	0	0			REV__tr|A0A7D6ZW70|A0A7D6ZW70_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16660PE=4SV=1	REV__tr|A0A7D6ZW70|A0A7D6ZW70_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16660PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	587.3038940429688	2	587.307884	1172.60121	1.1494	0.00067505	-2.0558	-0.0012074	-0.90639	-0.00053233	587.3064285716006	143.61	1.0885	143.61	143.32	144.4	0					44	21	3	0	0	0	0.42676	1	16805	16805		49.442	5.3247	1	304580	+		38733	32274	31973	31996	42052	42052					0.0218176100825076
MREWGAEALT	10	Unmodified	_MREWGAEALT_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	582.8480834960938	2	582.279323	1162.54409	-1.566	-0.00091183	1.9377	0.0011283	0.37171	0.00021644	582.2802186588589	53.382	0.81804	50.174	49.944	50.762	-3.208					26	15	2	0	0	0	0.02706	1	3281	3281		30.318	12.953	1	78796			38734	13545	31974	31997	42053	42053					-0.030677062681206735
MRFARMARR	9	Unmodified	_MRFARMARR_					0	0	0			REV__ENSG00000161956|ENST00000321337|SENP3	REV__ENSG00000161956|ENST00000321337|SENP3	MULTI-MSMS	OvCa9_classI_Rep2	2	597.823974609375	2	597.826586	1193.63862	-4.1469	-0.0024791	-0.29098	-0.00017395	-4.4379	-0.0026531	597.8262965638429	152.69	0.95377	152.46	152.23	153.19	-0.22696					55	20	4	0	0	0	0.68424	1	15548	15548		21.96	1.013	1	133350	+		38735	20713	31975	31998	42054	42054					0.049545737928610833
MRFLAATFL	9	Unmodified	_MRFLAATFL_					0	0	0		nc|ENSG00000119655|P61916-2|NPC2;ENSG00000119655|ENST00000555619|NPC2	nc|ENSG00000119655|P61916-2|NPC2	nc|ENSG00000119655|P61916-2|NPC2	MULTI-MSMS	OvCa99_classI_Rep5	1	535.2981567382812	2	535.296788	1068.57902	0.95085	0.00050899	0.69048	0.00036961	1.6413	0.0008786	535.2971448900071	131.73	1.1691	131.73	131.39	132.56	0					80	24	4	0	0	0	0.13504	3	15327	15279;15303;15327		87.696	18.91	1	8281600			38736	3377	31976	31999	42055;42056;42057	42057					0.047475813304799885
MRGVERSPPPT	11	Unmodified	_MRGVERSPPPT_					0	0	0		ENST00000373675.3_1_10:69881283-69881397:+|nuORF	ENST00000373675.3_1_10:69881283-69881397:+|nuORF	ENST00000373675.3_1_10:69881283-69881397:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	613.8226318359375	2	613.819147	1225.62374	1.9793	0.001215	3.5	0.0021484	5.4794	0.0033634	613.8211310976798	83.462	8.351	83.462	82.264	90.615	0					423	201	4	0	0	0	0.588	1	8674	8674		36.318	4.7878	1	13312000			38737	11014	31977	32000	42058	42058					0.019953604058628116
MRIYEYPD	8	Unmodified	_MRIYEYPD_					0	0	0			REV__ENSG00000205339|ENST00000379719|IPO7;REV__nc|ENSG00000133704|O15397-2|IPO8	REV__ENSG00000205339|ENST00000379719|IPO7	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7763061523438	2	543.749867	1085.48518	2.1782	0.0011844	-4.0664	-0.0022111	-1.8882	-0.0010267	543.7475687848686	98.767	0.4585	98.767	98.419	98.877	0					14	10	2	0	0	0	0.028476	1	10846	10846		47.916	10.756	1	455610	+		38738	23212;19153	31978	32001	42059	42059					-0.05414182562458336
MRKAEKLPQT	10	Unmodified	_MRKAEKLPQT_					0	0	0			REV__ENST00000462230.5_1_3:44409048-44409219:+|nuORF	REV__ENST00000462230.5_1_3:44409048-44409219:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	401.2298583984375	3	401.228902	1200.66488	4.2144	0.0016909	-1.0036	-0.00040268	3.2108	0.0012883	401.2283785788715	90.193	0.61302	90.193	89.891	90.504	0					33	14	3	0	0	0	0.58667	1	9668	9668		43.651	3.5926	1	1603000	+		38739	22106	31979	32002	42060	42060					0.07257121445331904
MRKERWWETYF	11	Unmodified	_MRKERWWETYF_					0	0	0			REV__ENST00000292599.3_1_5:179203171-179203312:+|nuORF	REV__ENST00000292599.3_1_5:179203171-179203312:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	409.578857421875	4	408.700143	1630.77147	0.20891	8.538E-05	-0.25402	-0.00010382	-0.045111	-1.8437E-05	408.6999539459805	27.27	0.34919	27.27	27.142	27.491	0					11	6	3	0	0	0	0.026525	1	794	794		6.6596	3.2509	1	23915	+		38740	24164	31980	32003	42061	42061					-0.018687480601329298
MRKIKVLT	8	Unmodified	_MRKIKVLT_					0	0	0			REV__nc|ENSG00000152455|Q9H5I1-2|SUV39H2	REV__nc|ENSG00000152455|Q9H5I1-2|SUV39H2	MULTI-SECPEP	OvCa9_classI_Rep3	3	494.2876281738281	2	494.82043	987.626307	-1.2	-0.00059378	-2.3776	-0.0011765	-3.5776	-0.0017703	494.81897195857226	83.731	0.80986	81.47	81.164	81.974	-2.261					22	17	2	0	0	0	0.028476	1	4865	4865		65.803	19.851	1	34558	+		38741	20286	31981	32004	42062	42062					0.13199860601491764
MRKIKVLT	8	Unmodified	_MRKIKVLT_					0	0	0			REV__nc|ENSG00000152455|Q9H5I1-2|SUV39H2	REV__nc|ENSG00000152455|Q9H5I1-2|SUV39H2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	494.82043	987.626307	0.66111	0.00032713	-4.3982	-0.0021763	-3.7371	-0.0018492	494.8181510262	82.74	0.51524	81.141	80.854	81.369	-1.5988	-0.1154	-0.00054961	NaN	65.803	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24634	+		38742	20286	31981	32004							0.13199860601491764
MRKRWLPLSLA	11	Unmodified	_MRKRWLPLSLA_					0	0	0			REV__ENST00000568433.1_1_16:19222679-19234400:+|nuORF	REV__ENST00000568433.1_1_16:19222679-19234400:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	457.6092529296875	3	457.607825	1369.80165	-3.7463	-0.0017143	4.051	0.0018538	0.30479	0.00013947	457.60971240856696	157.06	2.9403	156.83	155.39	158.33	-0.22696					220	89	3	0	0	0	0.72542	1	16056	16056		10.104	0.45776	1	46638	+		38743	27714	31982	32005	42063	42063					0.13153655395740316
MRKSLKHHRH	10	Unmodified	_MRKSLKHHRH_					0	0	0		ENST00000342992.10_3_2:179393631-179393760:-|nuORF	ENST00000342992.10_3_2:179393631-179393760:-|nuORF	ENST00000342992.10_3_2:179393631-179393760:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.2938537597656	3	443.919285	1328.73603	0.68446	0.00030385	2.9543	0.0013115	3.6388	0.0016153	443.9205074959669	60.231	0.85386	60.231	59.918	60.772	0					51	20	3	0	0	0	0.027006	1	5220	5220		37.508	10.758	1	3453600			38744	10588	31983	32006	42064	42064					0.08480678993396396
MRKVVLEAP	9	Unmodified	_MRKVVLEAP_					0	0	0		ENSG00000184924|ENST00000328379|PTRHD1	ENSG00000184924|ENST00000328379|PTRHD1	ENSG00000184924|ENST00000328379|PTRHD1	MULTI-SECPEP	OvCa9_classI_Rep3	3	522.3389892578125	2	521.807519	1041.60049	0.33408	0.00017432	-1.7744	-0.00092588	-1.4403	-0.00075155	522.3081493220019	107.06	1.1423	105.79	105.16	106.31	-1.267					27	21	2	0	0	0	0.027461	1	7542	7542		40.778	12.896	1	81240			38745	8203	31984	32007	42065	42065					0.08134966359216378
MRKVVLEAP	9	Unmodified	_MRKVVLEAP_					0	0	0		ENSG00000184924|ENST00000328379|PTRHD1	ENSG00000184924|ENST00000328379|PTRHD1	ENSG00000184924|ENST00000328379|PTRHD1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.807519	1041.60049	0.13144	6.8589E-05	-0.38618	-0.00020151	-0.25474	-0.00013292	521.807188654927	106.27	0.34962	105.83	105.55	105.9	-0.43642	0.020763	0.0001828	NaN	40.778	14	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30653			38746	8203	31984	32007							0.08134966359216378
MRLLVLLWG	9	Unmodified	_MRLLVLLWG_					0	0	0		nc|ENSG00000161649|Q6UXG3-3|CD300LG;nc|ENSG00000161649|Q6UXG3-2|CD300LG;nc|ENSG00000161649|Q6UXG3-5|CD300LG;nc|ENSG00000161649|Q6UXG3-4|CD300LG;ENSG00000161649|ENST00000317310|CD300LG;CD300LG|p.S135Ffs*46|1|0.07|ENSG00000161649|chr17:43852933-43852934|-/A|frameshift_variant	nc|ENSG00000161649|Q6UXG3-3|CD300LG	nc|ENSG00000161649|Q6UXG3-3|CD300LG	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.7349243164062	2	550.83608	1099.65761	0.71248	0.00039246	-1.5002	-0.00082637	-0.78773	-0.00043391	550.8350110521733	153.45	0.87941	153.45	153.15	154.03	0					38	17	3	0	0	0	0.027462	1	17983	17983		31.955	5.2619	1	115520			38747	6134	31985	32008	42066	42066					0.11176433635569083
MRLRYLAAE	9	Unmodified	_MRLRYLAAE_					0	0	0		ENSG00000168944|ENST00000306467|CEP120;nc|ENSG00000168944|Q8N960-2|CEP120	ENSG00000168944|ENST00000306467|CEP120	ENSG00000168944|ENST00000306467|CEP120	MULTI-MSMS	OvCa99_classI_Rep5	1	561.8082275390625	2	561.808051	1121.60155	0.35505	0.00019947	1.4201	0.0007978	1.7751	0.00099727	561.808843709991	23.016	0.40322	23.016	22.894	23.297	0					10	7	2	0	0	0	0.7044	1	285	285		16.473	1.6083	1	58302			38748	6961	31986	32009	42067	42067					0.0456118072809204
MRLVLALAAH	10	Unmodified	_MRLVLALAAH_					0	0	0		ENSG00000150764|ENST00000440460|DIXDC1;ENST00000528399.1_1_11:111808148-111844979:+|nuORF;DIXDC1|p.N193Rfs*18|1|0.08|ENSG00000150764|chr11:111974904-111974905|-/GACTTACCACACTGTTTTCTGCCTAC|frameshift_variant;nc|ENSG00000150764|Q155Q3-5|DIXDC1;nc|ENSG00000150764|Q155Q3-4|DIXDC1	ENSG00000150764|ENST00000440460|DIXDC1	ENSG00000150764|ENST00000440460|DIXDC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.8262329101562	2	547.828786	1093.64302	-4.8131	-0.0026367	0.4235	0.000232	-4.3896	-0.0024047	547.8288597088392	154.99	1.902	153.5	152.83	154.73	-1.4911					109	49	3	0	0	0	0.81289	1	15375	15375		17.365	3.5896	1	64964			38749	5518	31987	32010	42068	42068					0.09994361487406422
MRMMVLSEY	9	Unmodified	_MRMMVLSEY_					0	0	0			REV__ENST00000559238.5_1_15:41060140-41072106:-|nuORF	REV__ENST00000559238.5_1_15:41060140-41072106:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	580.2613525390625	2	580.269055	1158.52356	1.3456	0.00078082	-2.1943	-0.0012733	-0.84867	-0.00049246	580.2676507572036	129.63	0.79567	129.63	129.31	130.1	0					35	16	3	0	0	0	0.16524	1	15040	15040		82.305	2.854	1	790220	+		38750	17645	31988	32011	42069	42069					-0.04936336243781625
MRNRDLQL	8	Oxidation (M)	_M(Oxidation (M))RNRDLQL_		M(1)RNRDLQL		M(110)RNRDLQL	0	0	1		ENST00000556340.1_1_9:139265151-139266545:-|nuORF;nc|ENSG00000289701|Q9H257-3|CARD9;nc|ENSG00000289701|Q9H257-2|CARD9;ENSG00000187796|ENST00000371732|CARD9;ENST00000485975.1_1_9:139264964-139265319:-|nuORF	ENST00000556340.1_1_9:139265151-139266545:-|nuORF	ENST00000556340.1_1_9:139265151-139266545:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	531.27880859375	2	531.279657	1060.54476	2.1803	0.0011584	-1.3479	-0.00071613	0.83242	0.00044225	531.2788655438274	87.033	0.37296	87.033	86.801	87.174	0					17	8	3	0	0	0	0.27528	1	9211	9211		111.65	6.9017	1	1414900			38751	8436	31989	32012	42070	42070		256			0.016911331715846245
MRPADRVCR	9	Oxidation (M)	_M(Oxidation (M))RPADRVCR_		M(1)RPADRVCR		M(72)RPADRVCR	0	0	1		ENST00000462742.1_1_21:45750083-45750963:-|nuORF	ENST00000462742.1_1_21:45750083-45750963:-|nuORF	ENST00000462742.1_1_21:45750083-45750963:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	560.2824096679688	2	560.279134	1118.54372	0.10971	6.1469E-05	2.815	0.0015772	2.9247	0.0016386	560.2806644185025	54.529	0.38383	54.529	54.334	54.718	0					18	7	3	0	0	0	0.22621	1	4406	4406		71.877	7.6702	1	1327400			38752	12207	31990	32013	42071	42071		334			-0.010814044689823277
MRPFSAPN	8	Unmodified	_MRPFSAPN_					0	0	0			REV__ENST00000414660.1_1_X:44493047-44494475:+|nuORF	REV__ENST00000414660.1_1_X:44493047-44494475:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	460.2279968261719	2	460.226362	918.438172	-0.48528	-0.00022334	2.4901	0.001146	2.0048	0.00092266	460.2273819679406	97.801	1.7788	96.042	95.62	97.399	-1.7595					95	34	4	0	0	0	0.73494	1	6524	6524		34.173	2.5937	1	583840	+		38753	25522	31991	32014	42072	42072					-0.024309973229378556
MRPVRLMK	8	Unmodified	_MRPVRLMK_					0	0	0		ENSG00000137106|ENST00000318158|GRHPR;ENST00000377824.8_1_9:37422741-37431094:+|nuORF;GRHPR|p.K95Sfs*13|1|0.07|ENSG00000137106|chr9:37425990-37425990|A/-|frameshift_variant;ENST00000493368.5_1_9:37422741-37424891:+|nuORF	ENSG00000137106|ENST00000318158|GRHPR	ENSG00000137106|ENST00000318158|GRHPR	MULTI-MSMS	OvCa9_classI_Rep2	2	515.8052978515625	2	515.804257	1029.59396	-0.17166	-8.8541E-05	3.2109	0.0016562	3.0393	0.0015677	515.8057522410776	136.15	1.0273	135.92	135.57	136.6	-0.22696					51	20	4	0	0	0	0.66704	1	13535	13535		50.025	2.3672	1	147900			38754	4559	31992	32015	42073	42073					0.08034749926832774
MRPVRLMK	8	Unmodified	_MRPVRLMK_					0	0	0		ENSG00000137106|ENST00000318158|GRHPR;ENST00000377824.8_1_9:37422741-37431094:+|nuORF;GRHPR|p.K95Sfs*13|1|0.07|ENSG00000137106|chr9:37425990-37425990|A/-|frameshift_variant;ENST00000493368.5_1_9:37422741-37424891:+|nuORF	ENSG00000137106|ENST00000318158|GRHPR	ENSG00000137106|ENST00000318158|GRHPR	MULTI-MATCH	OvCa9_classI_Rep3	3		2	515.804257	1029.59396	-0.64035	-0.0003303	3.3403	0.0017229	2.7	0.0013927	515.8058540204944	136.84	1.0181	135.76	135.41	136.43	-1.0858	-0.024811	0.00087966	NaN	50.025	47	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116890			38755	4559	31992	32015							0.08034749926832774
MRPVRLMK	8	Unmodified	_MRPVRLMK_					0	0	0		ENSG00000137106|ENST00000318158|GRHPR;ENST00000377824.8_1_9:37422741-37431094:+|nuORF;GRHPR|p.K95Sfs*13|1|0.07|ENSG00000137106|chr9:37425990-37425990|A/-|frameshift_variant;ENST00000493368.5_1_9:37422741-37424891:+|nuORF	ENSG00000137106|ENST00000318158|GRHPR	ENSG00000137106|ENST00000318158|GRHPR	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	515.804257	1029.59396	1.8958	0.00097788	0.71685	0.00036975	2.6127	0.0013476	515.8044745530898	137.21	1.0479	135.67	135.37	136.42	-1.5437	-0.1128	-0.0018267	NaN	50.025	51	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173720			38756	4559	31992	32015							0.08034749926832774
MRQLRRSSLER	11	Unmodified	_MRQLRRSSLER_					0	0	0			REV__ENSG00000114735|ENST00000232854|HEMK1	REV__ENSG00000114735|ENST00000232854|HEMK1	MULTI-MSMS	OvCa9_classI_Rep2	2	477.9349060058594	3	477.936893	1430.78885	-0.079097	-3.7803E-05	-3.7408	-0.0017879	-3.8199	-0.0018257	477.9350959397934	70.327	1.6437	67.757	67.361	69.005	-2.5707					95	31	4	0	0	0	0.71831	1	5633	5633		23.378	3.0629	1	809310	+		38757	18197	31993	32016	42074	42074					0.09068592265543884
MRQPRRLFNYQ	11	Unmodified	_MRQPRRLFNYQ_					0	0	0			REV__nc|ENSG00000107331|Q9BZC7|ABCA2	REV__nc|ENSG00000107331|Q9BZC7|ABCA2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.7783508300781	3	503.601622	1507.78304	0.52776	0.00026578	-0.032705	-1.647E-05	0.49505	0.00024931	503.9360513050025	36.741	0.44701	33.848	33.695	34.142	-2.8925					12	8	2	0	0	0	0.026364	1	1313	1313		13.508	4.7086	1	12340	+		38758	17843	31994	32017	42075	42075					0.04945493753871233
MRQQKLLV	8	Unmodified	_MRQQKLLV_					0	0	0		nc|ENSG00000048052|Q9UKV0-11|HDAC9;nc|ENSG00000048052|Q9UKV0-9|HDAC9;nc|ENSG00000048052|Q9UKV0-10|HDAC9;nc|ENSG00000048052|Q9UKV0-8|HDAC9;nc|ENSG00000048052|Q9UKV0-3|HDAC9;ENST00000461159.6_1_7:18330122-18868840:+|nuORF;nc|ENSG00000048052|Q9UKV0-4|HDAC9;nc|ENSG00000048052|Q9UKV0-2|HDAC9;nc|ENSG00000048052|Q9UKV0|HDAC9;nc|ENSG00000048052|Q9UKV0-6|HDAC9;nc|ENSG00000048052|Q9UKV0-5|HDAC9;ENSG00000048052|ENST00000686413|HDAC9	nc|ENSG00000048052|Q9UKV0-11|HDAC9	nc|ENSG00000048052|Q9UKV0-11|HDAC9	MULTI-MSMS	OvCa99_classI_Rep5	1	508.3074645996094	2	508.307687	1014.60082	2.3764	0.0012079	-4.2963	-0.0021838	-1.9199	-0.0009759	508.3053377769719	96.536	0.58849	96.536	96.378	96.966	0					29	13	3	0	0	0	0.66704	1	10580	10580		50.025	2.3672	1	957430			38759	1154	31995	32018	42076	42076					0.09410386079071031
MRQSSLLE	8	Unmodified	_MRQSSLLE_					0	0	0			REV__chr2:26792833-26793206|266|11.81|0.09|6.97|+|0|CENPA,None|1	REV__chr2:26792833-26793206|266|11.81|0.09|6.97|+|0|CENPA,None|1	MULTI-MSMS	OvCa99_classI_Rep5	1	482.2513427734375	2	482.250034	962.485516	2.4703	0.0011913	-0.2444	-0.00011786	2.2259	0.0010735	482.25010090801464	108.16	0.51027	108.16	107.9	108.41	0					21	11	3	0	0	0	0.40148	1	12223	12223		87.754	2.3948	1	421860	+		38760	15999	31996	32019	42077	42077					0.002772371574110366
MRRHPRRV	8	Unmodified	_MRRHPRRV_					0	0	0		ENST00000423324.5_1_2:238969723-238973059:+|nuORF	ENST00000423324.5_1_2:238969723-238973059:+|nuORF	ENST00000423324.5_1_2:238969723-238973059:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.3026733398438	2	554.325068	1106.63558	-0.48696	-0.00026993	3.5987	0.0019948	3.1117	0.0017249	554.3271442156516	103.51	0.30177	103.51	103.43	103.73	0					10	6	2	0	0	0	0.028476	1	11572	11572		50.025	11.218	1	134690			38761	11703	31997	32020	42078	42078					0.08653066730380488
MRRIYSRID	9	Unmodified	_MRRIYSRID_					0	0	0		ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	ENSG00000186222|ENST00000320776|BLOC1S4	MULTI-MSMS	OvCa99_classI_Rep5	1	403.88800048828125	3	403.88888	1208.64481	1.3892	0.00056106	-4.201	-0.0016967	-2.8118	-0.0011357	403.8872219542557	31.882	0.94412	31.882	31.658	32.602	0					49	18	4	0	0	0	0.57283	1	1343	1343		35.152	2.4015	1	1484000			38762	8324	31998	32021	42079	42079					0.04883370505399398
MRRRWRRRPAH	11	Unmodified	_MRRRWRRRPAH_					0	0	0		RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.2514038085938	3	526.635882	1576.88582	1.8204	0.0009587	1.9673	0.0010361	3.7878	0.0019948	526.6368067331709	118.16	0.46357	118.16	117.93	118.39	0					26	9	4	0	0	0	0.026497	1	13516	13516		9.6461	2.9865	1	117000			38763	32788	31999	32022	42080	42080					0.120450440558443
MRRRWRRRPAH	11	Unmodified	_MRRRWRRRPAH_					0	0	0		RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	526.96875	3	526.635882	1576.88582	0.89518	0.00047143	-2.628	-0.001384	-1.7328	-0.00091258	526.6344674636681	62.939	1.7933	59.905	59.561	61.354	-3.0339					97	35	4	0	0	0	0.72538	2	2363	2363;2376		10.587	0.94066	1	164120			38764	32788	31999	32022	42081;42082	42081					0.120450440558443
MRSEYPGVGPL	11	Unmodified	_MRSEYPGVGPL_					0	0	0			REV__ENSG00000196466|ENST00000430385|ZNF799	REV__ENSG00000196466|ENST00000430385|ZNF799	MULTI-MSMS	OvCa9_classI_Rep4_	4	603.3063354492188	2	603.302798	1204.59104	1.6371	0.00098764	4.208	0.0025387	5.8451	0.0035264	603.3051493315845	140.23	0.90874	138.74	138.41	139.32	-1.4952					23	17	2	0	0	0	0.72244	1	13696	13696		21.96	0.25755	1	12666	+		38765	22833	32000	32023	42083	42083					-0.0030684671696690202
MRSLLPNPQ	9	Unmodified	_MRSLLPNPQ_					0	0	0			REV__ENST00000444772.3_1_10:21805118-21806168:-|nuORF	REV__ENST00000444772.3_1_10:21805118-21806168:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.2847290039062	2	528.286951	1054.55935	-0.42245	-0.00022318	-3.8417	-0.0020295	-4.2642	-0.0022527	528.284824410708	142.01	0.99675	140.54	140.24	141.23	-1.4627					54	18	4	0	0	0	0.40818	1	13877	13877		51.193	6.8155	1	263670	+		38766	25878	32001	32024	42084	42084					0.03425205319717861
MRTSKPSRRK	10	Unmodified	_MRTSKPSRRK_					0	0	0			REV__ENST00000409512.5_1_2:143638924-143642923:+|nuORF	REV__ENST00000409512.5_1_2:143638924-143642923:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	623.8634643554688	2	623.86168	1245.70881	0.28124	0.00017546	0.34706	0.00021652	0.6283	0.00039197	623.8619187333813	72.494	1.3598	72.494	71.916	73.276	0					96	33	4	0	0	0	0.49595	1	7028	7028		26.693	0	1	3494300	+		38767	25469	32002	32025	42085	42085					0.09578150662332519
MRVFFPAY	8	Unmodified	_MRVFFPAY_					0	0	0		ENST00000512327.1_1_3:141105442-141105529:+|nuORF	ENST00000512327.1_1_3:141105442-141105529:+|nuORF	ENST00000512327.1_1_3:141105442-141105529:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.80517578125	2	515.762581	1029.51061	-0.183	-9.4386E-05	0.73338	0.00037825	0.55038	0.00028387	515.7628452130285	136.21	0.1965	135.99	135.86	136.06	-0.22696					5	3	2	0	0	0	0.028476	1	13523	13523		35.201	8.4046	1	3733.5			38768	12994	32003	32026	42086	42086					-0.0029666324937807076
MRVGAVLVEV	10	Unmodified	_MRVGAVLVEV_					0	0	0			REV__ENSG00000108510|ENST00000397786|MED13	REV__ENSG00000108510|ENST00000397786|MED13	MULTI-MSMS	OvCa99_classI_Rep5	1	536.81396484375	2	536.812802	1071.61105	1.9795	0.0010626	-2.824	-0.001516	-0.84453	-0.00045335	536.8108782602092	110.82	0.70716	110.82	110.49	111.2	0					46	15	4	0	0	0	0.15262	1	12593	12593		101.6	24.283	1	669750	+		38769	17893	32004	32027	42087	42087					0.07810949013628488
MRVHDNVR	8	Unmodified	_MRVHDNVR_					0	0	0		ENSG00000141956|ENST00000398548|PRDM15;nc|ENSG00000141956|P57071-3|PRDM15;nc|ENSG00000141956|P57071-2|PRDM15;nc|ENSG00000141956|P57071|PRDM15	ENSG00000141956|ENST00000398548|PRDM15	ENSG00000141956|ENST00000398548|PRDM15	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.3334350585938	2	513.766717	1025.51888	0.41496	0.00021319	-1.2675	-0.00065118	-0.8525	-0.00043799	513.7658727337539	72.325	0.59741	72.325	72.086	72.684	0					36	14	3	0	0	0	0.028476	1	7088	7088		94.006	35.224	1	1445400			38770	4947	32005	32028	42088	42088					0.007142837199580754
MRVPRWHG	8	Unmodified	_MRVPRWHG_					0	0	0			REV__ENST00000409185.5_1_2:131808281-131808602:-|nuORF	REV__ENST00000409185.5_1_2:131808281-131808602:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	519.7737426757812	2	519.774345	1037.53414	1.0842	0.00056353	-1.7391	-0.00090394	-0.65493	-0.00034042	519.7733182741239	128.34	2.792	127.25	126.36	129.15	-1.0933					96	55	4	0	0	0	0.73938	1	10123	10123		31.955	0	1	251840	+		38771	25463	32006	32029	42089	42089					0.016871953078180013
MRYLHRIYV	9	Unmodified	_MRYLHRIYV_					0	0	0		ENSG00000140526|ENST00000352732|ABHD2;ENST00000568308.1_1_15:89728670-89736600:+|nuORF	ENSG00000140526|ENST00000352732|ABHD2	ENSG00000140526|ENST00000352732|ABHD2	MULTI-MSMS	OvCa99_classI_Rep5	1	417.5670471191406	3	417.565737	1249.67538	-0.41132	-0.00017175	0.065277	2.7258E-05	-0.34605	-0.0001445	417.56571678239476	65.618	0.63251	65.618	65.426	66.059	0					37	15	3	0	0	0	0.26076	1	6044	6044		67.494	25.156	1	1548200			38772	4856	32007	32030	42090	42090					0.06053148890441662
MSAERPSVR	9	Unmodified	_MSAERPSVR_					0	0	0		ENST00000539644.5_1_12:124497379-124497487:+|nuORF	ENST00000539644.5_1_12:124497379-124497487:+|nuORF	ENST00000539644.5_1_12:124497379-124497487:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.3133544921875	2	516.766383	1031.51821	-0.065098	-3.364E-05	1.5724	0.00081257	1.5073	0.00077893	516.7671280516031	45.267	0.35406	45.267	44.977	45.332	0					11	7	2	0	0	0	0.027453	1	3108	3108		37.812	0	1	75424			38773	13439	32008	32031	42091	42091					0.003714442802447593
MSAFTQIIF	9	Unmodified	_MSAFTQIIF_					0	0	0		ENST00000491177.1_1_1:153602957-153603647:-|nuORF	ENST00000491177.1_1_1:153602957-153603647:-|nuORF	ENST00000491177.1_1_1:153602957-153603647:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	529.2718505859375	2	529.272978	1056.5314	2.0165	0.0010673	-3.6264	-0.0019194	-1.6099	-0.00085206	529.2709143301529	110.62	2.1589	110.62	109.86	112.02	0					135	47	5	0	0	0	0.35444	1	12622	12622		56.721	1.9564	1	8549300			38774	12709	32009	32032	42092	42092					0.005398823396262742
MSAILLAGKA	10	Unmodified	_MSAILLAGKA_					0	0	0		CD244|p.Q177Rfs*36|1|0.04|ENSG00000122223|chr1:160841351-160841351|G/-|frameshift_variant	CD244|p.Q177Rfs*36|1|0.04|ENSG00000122223|chr1:160841351-160841351|G/-|frameshift_variant	CD244|p.Q177Rfs*36|1|0.04|ENSG00000122223|chr1:160841351-160841351|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.7895812988281	2	487.788795	973.563038	3.5562	0.0017347	-0.73408	-0.00035808	2.8221	0.0013766	487.7882512057077	132.82	4.8462	131.32	130.38	135.22	-1.5015					236	97	4	0	0	0	0.5675	1	12836	12836		45.972	8.9438	1	143240			38775	205	32010	32033	42093	42093					0.0751987509358969
MSAKKIRE	8	Unmodified	_MSAKKIRE_					0	0	0			REV__tr|A0A553SR28|A0A553SR28_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_00130PE=4SV=1	REV__tr|A0A553SR28|A0A553SR28_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_00130PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	481.7746276855469	2	481.776219	961.537886	-0.34764	-0.00016748	-3.0086	-0.0014495	-3.3562	-0.0016169	481.7745902460705	38.904	0.75903	38.904	38.661	39.42	0					23	16	2	0	0	0	0.60223	1	2250	2250		63.534	1.4264	1	490530	+		38776	30685	32011	32034	42094	42094					0.05557820291005555
MSAKKIRE	8	Unmodified	_MSAKKIRE_					0	0	0			REV__tr|A0A553SR28|A0A553SR28_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_00130PE=4SV=1	REV__tr|A0A553SR28|A0A553SR28_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_00130PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	481.776219	961.537886	-0.34764	-0.00016748	-3.0086	-0.0014495	-3.3562	-0.0016169	481.7745902460705	38.904	0.75903	38.904	38.661	39.42	0	0	0	NaN	63.534	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	490530	+		38777	30685	32011	32034							0.05557820291005555
MSANVFRINS	10	Unmodified	_MSANVFRINS_					0	0	0		nc|ENSG00000171045|Q96NA8-2|TSNARE1;ENSG00000171045|ENST00000524325|TSNARE1	nc|ENSG00000171045|Q96NA8-2|TSNARE1	nc|ENSG00000171045|Q96NA8-2|TSNARE1	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2958374023438	2	569.787315	1137.56008	1.8198	0.0010369	-2.4263	-0.0013824	-0.60645	-0.00034555	569.7858531310966	77.921	0.58031	77.921	77.714	78.294	0					15	13	2	0	0	0	0.026656	1	7880	7880		56.434	8.7765	1	601530			38778	7163	32012	32035	42095	42095					-0.0032000003120629117
MSDKDDIETPL	11	Unmodified	_MSDKDDIETPL_					0	0	0		ENSG00000055147|ENST00000351797|FAM114A2	ENSG00000055147|ENST00000351797|FAM114A2	ENSG00000055147|ENST00000351797|FAM114A2	MULTI-SECPEP	OvCa99_classI_Rep5	1	631.823974609375	2	632.292293	1262.57003	1.6552	0.0010465	-3.8799	-0.0024532	-2.2247	-0.0014067	632.7909663319887	146.52	0.24203	146.52	146.33	146.57	0					5	4	2	0	0	0	0.025265	1	17128	17128		28.081	3.8787	1	37715			38779	1220	32013	32036	42096	42096					-0.05074901607167703
MSELIIPNN	9	Unmodified	_MSELIIPNN_					0	0	0			REV__tr|A0A7D6ZPQ1|A0A7D6ZPQ1_9CLOTElongationfactorGOS=ClostridiumintestinaleOX=36845GN=fusAPE=3SV=1	REV__tr|A0A7D6ZPQ1|A0A7D6ZPQ1_9CLOTElongationfactorGOS=ClostridiumintestinaleOX=36845GN=fusAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.309814453125	2	515.765517	1029.51648	-0.95377	-0.00049192	-3.0245	-0.0015599	-3.9782	-0.0020518	516.2642424530605	99.629	0.20642	97.304	97.16	97.366	-2.3253					5	3	2	0	0	0	0.027462	1	8888	8888		26.693	0	1	12433	+		38780	32140	32014	32037	42097	42097					0.0029039047165042575
MSETLRDLIV	10	Unmodified	_MSETLRDLIV_					0	0	0			REV__tr|A0A7D6ZYF4|A0A7D6ZYF4_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_16195PE=4SV=1	REV__tr|A0A7D6ZYF4|A0A7D6ZYF4_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_16195PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	588.783935546875	2	588.818281	1175.62201	-0.91642	-0.00053961	-2.0025	-0.0011791	-2.9189	-0.0017187	588.8161739446666	70.09	0.88106	66.609	66.249	67.13	-3.4812					29	17	2	0	0	0	0.027084	1	5337	5337		6.7355	0	1	33711	+		38781	32369	32015	32038	42098	42098					0.04122306597264469
MSFETQFVK	9	Unmodified	_MSFETQFVK_					0	0	0		ENST00000304195.7_1_9:85860879-85861071:-|nuORF	ENST00000304195.7_1_9:85860879-85861071:-|nuORF	ENST00000304195.7_1_9:85860879-85861071:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	558.3096923828125	2	558.773342	1115.53213	-0.53349	-0.0002981	-1.8004	-0.001006	-2.3339	-0.0013041	559.27372593854	87.585	0.25514	84.958	84.85	85.105	-2.6269					6	4	2	0	0	0	0.027462	1	7456	7456		23.523	0	1	13313			38782	10223	32016	32039	42099	42099					-0.021013230113112513
MSFETQFVK	9	Unmodified	_MSFETQFVK_					0	0	0		ENST00000304195.7_1_9:85860879-85861071:-|nuORF	ENST00000304195.7_1_9:85860879-85861071:-|nuORF	ENST00000304195.7_1_9:85860879-85861071:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	558.773342	1115.53213	-1.4355	-0.00080214	-1.9402	-0.0010841	-3.3757	-0.0018863	559.2748350746338	86.921	0.30267	84.744	84.531	84.834	-2.1768	-0.10687	-8.3464E-05	NaN	30.318	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12006			38783	10223	32016	32039							-0.021013230113112513
MSGAWSVREP	10	Unmodified	_MSGAWSVREP_					0	0	0			REV__ENST00000267102.12_1_12:49497565-49499710:-|nuORF	REV__ENST00000267102.12_1_12:49497565-49499710:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	560.2682495117188	2	560.266216	1118.51788	0.5247	0.00029397	1.6495	0.00092415	2.1742	0.0012181	560.267013192415	46.831	0.70566	46.831	46.631	47.336	0					40	15	4	0	0	0	0.094891	1	3329	3329		114.89	10.471	1	1539900	+		38784	24049	32017	32040	42100	42100					-0.036639754395991986
MSGTLVMLLN	10	Unmodified	_MSGTLVMLLN_					0	0	0		nc|ENSG00000179869|Q86UQ4|ABCA13;ENSG00000179869|ENST00000435803|ABCA13;nc|ENSG00000179869|Q86UQ4-4|ABCA13;nc|ENSG00000179869|Q86UQ4-3|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MSMS	OvCa9_classI_Rep4_	4	539.7885131835938	2	539.785395	1077.55624	-0.049296	-2.6609E-05	3.8614	0.0020843	3.8121	0.0020577	539.7875283135534	96.586	2.2733	94.16	93.355	95.628	-2.4256					90	44	4	0	0	0	0.49595	1	8517	8517		54.722	3.5297	1	685970			38785	7844	32018	32041	42101	42101					0.02056194150736701
MSHLPMKLLRK	11	Unmodified	_MSHLPMKLLRK_					0	0	0		ENSG00000088205|ENST00000263239|DDX18;DDX18|p.D120Efs*51|1|0.44|ENSG00000088205|chr2:117817718-117817718|T/-|frameshift_variant	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MULTI-MSMS	OvCa9_classI_Rep4_	4	451.93170166015625	3	451.933432	1352.77847	-4.6838	-0.0021168	3.061	0.0013834	-1.6228	-0.0007334	451.93466630728255	157.42	2.9259	155.87	154.82	157.75	-1.545					169	85	3	0	0	0	0.71582	1	15645	15645		24.232	3.1996	1	50469			38786	1783	32019	32042	42102	42102					0.11618893286731691
MSICYIVGPS	10	Unmodified	_MSICYIVGPS_					0	0	0			REV__ENSG00000136878|ENST00000372429|USP20	REV__ENSG00000136878|ENST00000372429|USP20	MULTI-MSMS	OvCa99_classI_Rep5	1	535.2576293945312	2	535.256471	1068.49839	-0.58784	-0.00031465	-0.74495	-0.00039874	-1.3328	-0.00071339	535.2559945697838	61.479	0.92244	61.479	61.2	62.122	0					64	21	4	0	0	0	0.39172	1	5434	5434		69.628	5.4204	1	10205000	+		38787	19418	32020	32043	42103	42103					-0.03312067774731986
MSIEEYLGKL	10	Unmodified	_MSIEEYLGKL_					0	0	0			REV__ITIH6|p.Q461K|1|0.56|ENSG00000102313|chrX:54758693-54758693|G/T|missense_variant	REV__ITIH6|p.Q461K|1|0.56|ENSG00000102313|chrX:54758693-54758693|G/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	591.8114013671875	2	591.807382	1181.60021	2.0258	0.0011989	2.9648	0.0017546	4.9906	0.0029535	591.8091185252874	117.58	0.70213	117.58	117.23	117.93	0					39	14	4	0	0	0	0.50873	1	13468	13468		53.089	8.9722	1	588530	+		38788	17548	32021	32044	42104	42104					0.016675018486921545
MSIEEYLGKL	10	Unmodified	_MSIEEYLGKL_					0	0	0			REV__ITIH6|p.Q461K|1|0.56|ENSG00000102313|chrX:54758693-54758693|G/T|missense_variant	REV__ITIH6|p.Q461K|1|0.56|ENSG00000102313|chrX:54758693-54758693|G/T|missense_variant	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	591.807382	1181.60021	2.0258	0.0011989	2.9648	0.0017546	4.9906	0.0029535	591.8091185252874	117.58	0.70213	117.58	117.23	117.93	0	0	0	NaN	53.089	39	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	588530	+		38789	17548	32021	32044							0.016675018486921545
MSIISAQDLP	10	Unmodified	_MSIISAQDLP_					0	0	0		ENSG00000187492|ENST00000412678|CDHR4	ENSG00000187492|ENST00000412678|CDHR4	ENSG00000187492|ENST00000412678|CDHR4	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.7811889648438	2	537.778625	1073.5427	-0.6015	-0.00032347	3.6439	0.0019596	3.0424	0.0016361	537.7807214653701	56.69	1.2712	53.396	53.07	54.341	-3.2944					61	24	4	0	0	0	0.3094	1	3651	3651		79.713	8.8964	1	750450			38790	8403	32022	32045	42105	42105					0.008866596431062135
MSKFCKEV	8	Unmodified	_MSKFCKEV_					0	0	0		tr|A0A7D7ADG0|A0A7D7ADG0_9CLOTPrecorrin-6YC5,15-methyltransferase(Decarboxylating)subunitCbiTOS=ClostridiumintestinaleOX=36845GN=cbiTPE=4SV=1	tr|A0A7D7ADG0|A0A7D7ADG0_9CLOTPrecorrin-6YC5,15-methyltransferase(Decarboxylating)subunitCbiTOS=ClostridiumintestinaleOX=36845GN=cbiTPE=4SV=1	tr|A0A7D7ADG0|A0A7D7ADG0_9CLOTPrecorrin-6YC5,15-methyltransferase(Decarboxylating)subunitCbiTOS=ClostridiumintestinaleOX=36845GN=cbiTPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	486.2392578125	2	486.238081	970.461609	-0.40084	-0.0001949	0.26597	0.00012932	-0.13487	-6.5579E-05	486.23807952492217	53.131	4.8343	53.131	51.747	56.581	0					169	114	2	0	0	0	0.66057	1	4140	4140		51.335	1.8939	1	978250			38791	36240	32023	32046	42106	42106					-0.02480319600635994
MSKLRTTCPL	10	Unmodified	_MSKLRTTCPL_					0	0	0			REV__nc|ENSG00000176225|Q86VV8-3|RTTN	REV__nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-MSMS	OvCa9_classI_Rep2	2	575.3097534179688	2	575.309569	1148.60458	-1.1239	-0.00064659	2.5963	0.0014937	1.4724	0.00084711	575.3111142499293	98.321	3.118	97.428	96.974	100.09	-0.89306					184	62	6	0	0	0	0.025401	3	8955	8931;8955;8982		141.52	10.489	1	5141200	+		38792	21942	32024	32047	42107;42108;42109	42108					0.03622687790607415
MSKLRTTCPL	10	Unmodified	_MSKLRTTCPL_					0	0	0			REV__nc|ENSG00000176225|Q86VV8-3|RTTN	REV__nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-MSMS	OvCa9_classI_Rep3	3	575.3104248046875	2	575.309569	1148.60458	-0.889	-0.00051145	2.8029	0.0016126	1.9139	0.0011011	575.3111564833367	99.127	2.7262	97.442	97.061	99.787	-1.685					178	53	6	0	0	0	0.083353	5	6683	6640;6683;6696;6710;6721		117.81	24.301	1	7573400	+		38793	21942	32024	32047	42110;42111;42112;42113;42114	42111					0.03622687790607415
MSKLRTTCPL	10	Unmodified	_MSKLRTTCPL_					0	0	0			REV__nc|ENSG00000176225|Q86VV8-3|RTTN	REV__nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.3111572265625	2	575.309569	1148.60458	-1.245	-0.00071626	3.0248	0.0017402	1.7798	0.0010239	575.3112834479634	99.615	3.1767	97.29	96.951	100.13	-2.3253					165	62	6	0	0	0	0.083353	4	8882	8882;8894;8944;8968		117.81	4.2922	1	6971900	+		38794	21942	32024	32047	42115;42116;42117;42118	42115					0.03622687790607415
MSKNKKLTI	9	Unmodified	_MSKNKKLTI_					0	0	0		tr|A0A553SK71|A0A553SK71_NIACISporulationproteinOS=NialliacirculansOX=1397GN=CEQ21_18085PE=4SV=1	tr|A0A553SK71|A0A553SK71_NIACISporulationproteinOS=NialliacirculansOX=1397GN=CEQ21_18085PE=4SV=1	tr|A0A553SK71|A0A553SK71_NIACISporulationproteinOS=NialliacirculansOX=1397GN=CEQ21_18085PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.7937622070312	2	531.820627	1061.6267	2.3539	0.0012519	-4.2838	-0.0022782	-1.9298	-0.0010263	531.8185384990188	84.233	0.42204	84.233	84.009	84.431	0					15	9	2	0	0	0	0.027462	1	8798	8798		20.947	3.582	1	363450			38795	33586	32025	32048	42119	42119					0.09835235530658792
MSKNLSTIP	9	Unmodified	_MSKNLSTIP_					0	0	0		ENST00000422689.2_1_19:52887218-52887257:+|nuORF	ENST00000422689.2_1_19:52887218-52887257:+|nuORF	ENST00000422689.2_1_19:52887218-52887257:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.2962341308594	2	495.76806	989.521567	-2.4159	-0.0011977	-2.4312	-0.0012053	-4.8471	-0.002403	495.7667683616848	88.005	0.85437	85.402	85.079	85.933	-2.6027					31	16	3	0	0	0	0.027462	1	7521	7521		32.812	11.865	1	77085			38796	11698	32026	32049	42120	42120					0.02638694334268621
MSKNLSTIP	9	Unmodified	_MSKNLSTIP_					0	0	0		ENST00000422689.2_1_19:52887218-52887257:+|nuORF	ENST00000422689.2_1_19:52887218-52887257:+|nuORF	ENST00000422689.2_1_19:52887218-52887257:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	495.76806	989.521567	0.59043	0.00029272	-4.383	-0.0021729	-3.7926	-0.0018802	495.76557422877084	86.739	1.0741	85.308	85.015	86.09	-1.4311	-0.047109	-0.00065667	NaN	32.812	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43970			38797	11698	32026	32049							0.02638694334268621
MSKYLGQVVVS	11	Unmodified	_MSKYLGQVVVS_					0	0	0			REV__ENSG00000170852|ENST00000304056|KBTBD2	REV__ENSG00000170852|ENST00000304056|KBTBD2	MULTI-MSMS	OvCa9_classI_Rep2	2	605.8294067382812	2	605.828649	1209.64274	0.98205	0.00059496	2.4203	0.0014663	3.4024	0.0020613	605.8300024956297	29.154	0.71291	26.444	26.216	26.929	-2.7097					31	14	3	0	0	0	0.68709	1	674	674		12.812	0	1	52663	+		38798	21568	32027	32050	42121	42121					0.04630896976937038
MSLAEQARSK	10	Unmodified	_MSLAEQARSK_					0	0	0			REV__nc|ENSG00000058085|Q13753-2|LAMC2	REV__nc|ENSG00000058085|Q13753-2|LAMC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.7922973632812	2	560.792598	1119.57064	0.99026	0.00055533	-4.2732	-0.0023964	-3.2829	-0.001841	560.7902547795154	65.061	2.6294	61.576	61.114	63.744	-3.4854					165	53	6	0	0	0	0.38315	2	4663	4663;4675		70.816	8.7088	1	6333200	+		38799	16725	32028	32051	42122;42123	42122					0.015639826232018095
MSLAVALLPV	10	Unmodified	_MSLAVALLPV_					0	0	0		ENST00000582276.1_1_17:37830882-37844267:-|nuORF	ENST00000582276.1_1_17:37830882-37844267:-|nuORF	ENST00000582276.1_1_17:37830882-37844267:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3230895996094	2	507.306821	1012.59909	1.944	0.00098621	3.9449	0.0020013	5.8889	0.0029875	507.3087435549094	82.132	0.98958	82.132	81.532	82.522	0					47	23	3	0	0	0	0.027312	1	8540	8540		85.359	21.152	1	446910			38800	14003	32029	32052	42124	42124					0.09329332270442592
MSLAVALLPV	10	Unmodified	_MSLAVALLPV_					0	0	0		ENST00000582276.1_1_17:37830882-37844267:-|nuORF	ENST00000582276.1_1_17:37830882-37844267:-|nuORF	ENST00000582276.1_1_17:37830882-37844267:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	507.306821	1012.59909	-1.5259	-0.00077408	5.4453	0.0027624	3.9194	0.0019883	507.30925019336615	84.726	1.6715	82.465	81.974	83.645	-2.261	0.11002	0.0013702	NaN	85.359	42	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132430			38801	14003	32029	32052							0.09329332270442592
MSLAVALLPV	10	Unmodified	_MSLAVALLPV_					0	0	0		ENST00000582276.1_1_17:37830882-37844267:-|nuORF	ENST00000582276.1_1_17:37830882-37844267:-|nuORF	ENST00000582276.1_1_17:37830882-37844267:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	507.306821	1012.59909	1.004	0.00050933	3.4354	0.0017428	4.4394	0.0022521	507.30841481658297	85.115	0.63331	82.469	82.167	82.8	-2.6463	0.11334	-0.00066898	NaN	85.359	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105110			38802	14003	32029	32052							0.09329332270442592
MSLLFCIVL	9	Unmodified	_MSLLFCIVL_					0	0	0		ENST00000469474.5_1_1:169271551-169293633:-|nuORF	ENST00000469474.5_1_1:169271551-169293633:-|nuORF	ENST00000469474.5_1_1:169271551-169293633:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.7930297851562	2	519.789949	1037.56535	-0.92136	-0.00047891	3.7418	0.0019449	2.8204	0.001466	519.7918073911636	87.25	2.4049	84.623	84.054	86.459	-2.6269					132	47	5	0	0	0	0.29717	1	7443	7443		63.306	3.0123	1	2275400			38803	12347	32030	32053	42125	42125					0.04806587507027871
MSLMLVLLV	9	Unmodified	_MSLMLVLLV_					0	0	0			REV__tr|A0A7D7A231|A0A7D7A231_9CLOTDUF4878domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18000PE=4SV=1	REV__tr|A0A7D7A231|A0A7D7A231_9CLOTDUF4878domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18000PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8051452636719	2	509.805599	1017.59665	0.17054	8.6941E-05	-0.20871	-0.0001064	-0.038176	-1.9462E-05	509.80544933708404	111.24	1.4787	111.1	110.78	112.26	-0.13961					90	29	5	0	0	0	0.53957	1	10560	10560		38.806	0	1	1582600	+		38804	32520	32031	32054	42126	42126					0.08855160541133955
MSLMLVLLV	9	Unmodified	_MSLMLVLLV_					0	0	0			REV__tr|A0A7D7A231|A0A7D7A231_9CLOTDUF4878domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18000PE=4SV=1	REV__tr|A0A7D7A231|A0A7D7A231_9CLOTDUF4878domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18000PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.8005676269531	2	509.805599	1017.59665	0.41317	0.00021063	1.5776	0.00080427	1.9908	0.0010149	510.3079728513769	113.95	0.92051	112.5	112.34	113.26	-1.4461					27	17	2	0	0	0	0.027417	1	10559	10559		65.803	0	1	29563	+		38805	32520	32031	32054	42127	42127					0.08855160541133955
MSLMLVLLV	9	Unmodified	_MSLMLVLLV_					0	0	0			REV__tr|A0A7D7A231|A0A7D7A231_9CLOTDUF4878domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18000PE=4SV=1	REV__tr|A0A7D7A231|A0A7D7A231_9CLOTDUF4878domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18000PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	509.805599	1017.59665	0.55518	0.00028303	1.4022	0.00071487	1.9574	0.0009979	510.30831912464373	112.93	0.78944	112.81	112.52	113.31	-0.12174	0.2173	0.00040611	NaN	65.803	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10421	+		38806	32520	32031	32054							0.08855160541133955
MSLMLVLLV	9	Unmodified	_MSLMLVLLV_					0	0	0			REV__tr|A0A7D7A231|A0A7D7A231_9CLOTDUF4878domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18000PE=4SV=1	REV__tr|A0A7D7A231|A0A7D7A231_9CLOTDUF4878domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18000PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	509.805599	1017.59665	0.46708	0.00023812	-1.0026	-0.00051113	-0.53551	-0.00027301	509.8057495467382	113.53	1.1838	112.46	112.25	113.43	-1.0753	-0.13195	-0.0020459	NaN	65.803	36	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14395	+		38807	32520	32031	32054							0.08855160541133955
MSLPGWKAGV	10	Unmodified	_MSLPGWKAGV_					0	0	0		ENST00000486818.5_1_7:72951459-72951579:-|nuORF	ENST00000486818.5_1_7:72951459-72951579:-|nuORF	ENST00000486818.5_1_7:72951459-72951579:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.2798461914062	2	523.278595	1044.54264	0.20858	0.00010915	0.59193	0.00030974	0.80051	0.00041889	523.2795744368268	110.93	1.3679	109.33	108.86	110.23	-1.6011					67	25	4	0	0	0	0.42962	1	10223	10223		64.207	9.3127	1	123370			38808	12629	32032	32055	42128	42128					0.02214704433777115
MSLSNINTIN	10	Unmodified	_MSLSNINTIN_					0	0	0		tr|A0A7D6ZX79|A0A7D6ZX79_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=mutSPE=3SV=1	tr|A0A7D6ZX79|A0A7D6ZX79_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=mutSPE=3SV=1	tr|A0A7D6ZX79|A0A7D6ZX79_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=mutSPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	553.7822875976562	2	553.779156	1105.54376	1.6254	0.00090013	4.2866	0.0023738	5.9121	0.003274	553.7814642775205	110.03	0.67474	110.03	109.77	110.45	0					28	14	2	0	0	0	0.30325	1	12491	12491		80.455	0.74203	1	2492500			38809	35866	32033	32056	42129	42129					-0.004791259879539211
MSLTGHSTP	9	Unmodified	_MSLTGHSTP_					0	0	0		nc|ENSG00000226266|Q9UIF8-4|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;ENSG00000123636|ENST00000392783|BAZ2B;ENST00000472953.1_1_2:160261332-160289886:-|nuORF	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.25823974609375	2	465.72111	929.427666	-0.54595	-0.00025426	2.0997	0.00097785	1.5537	0.00072359	465.7219161920941	63.415	0.62241	59.94	59.723	60.345	-3.475					18	12	2	0	0	0	0.027462	1	4462	4462		35.618	0	1	54326			38810	3610	32034	32057	42130	42130					-0.039870247680369175
MSMTASSSTP	10	Unmodified	_MSMTASSSTP_					0	0	0		sp|P16736|HELI_HCMVADNAreplicationhelicaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=HELIPE=3SV=1;sp|F5HEN8|HELI_HCMVMDNAreplicationhelicaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=HELIPE=3SV=1	sp|P16736|HELI_HCMVADNAreplicationhelicaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=HELIPE=3SV=1	sp|P16736|HELI_HCMVADNAreplicationhelicaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=HELIPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.7958984375	2	500.209718	998.404882	-0.071432	-3.5731E-05	-2.0334	-0.0010171	-2.1048	-0.0010528	500.2084728340144	109.66	0.73817	107.98	107.78	108.51	-1.6824					19	13	2	0	0	0	0.026734	1	10084	10084		47.657	3.5405	1	30340			38811	32868	32035	32058	42131	42131					-0.09438411947814984
MSNAGAEENYH	11	Unmodified	_MSNAGAEENYH_					0	0	0		nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-2|UNC80;nc|ENSG00000144406|Q8N2C7-4|UNC80;ENST00000489023.5_1_2:210693994-210832362:+|nuORF	nc|ENSG00000144406|Q8N2C7-7|UNC80	nc|ENSG00000144406|Q8N2C7-7|UNC80	MULTI-SECPEP	OvCa9_classI_Rep4_	4	610.8355102539062	2	611.743302	1221.47205	0.72843	0.00044561	-3.1659	-0.0019367	-2.4375	-0.0014911	612.241798543815	68.578	0.39626	65.088	64.916	65.312	-3.4902					12	7	3	0	0	0	0.02539	1	5117	5117		35.152	0	1	13458			38812	5149	32036	32059	42132	42132					-0.12982665412505412
MSNKEMKLK	9	Unmodified	_MSNKEMKLK_					0	0	0			REV__ENST00000587557.5_1_19:9452746-9452905:+|nuORF	REV__ENST00000587557.5_1_19:9452746-9452905:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	554.79541015625	2	554.796294	1107.57804	2.6324	0.0014604	1.7428	0.00096692	4.3752	0.0024274	554.7972972615952	101.04	2.1155	101.04	100.69	102.81	0					126	49	5	0	0	0	0.37135	1	11306	11306		54.776	1.4249	1	32874000	+		38813	27877	32037	32060	42133	42133					0.028549988992608633
MSNKEMKLK	9	Unmodified	_MSNKEMKLK_					0	0	0			REV__ENST00000587557.5_1_19:9452746-9452905:+|nuORF	REV__ENST00000587557.5_1_19:9452746-9452905:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	554.7991333007812	2	554.796294	1107.57804	-1.2293	-0.00068202	3.2949	0.001828	2.0656	0.001146	554.7978766641985	117.1	2.2786	116.07	115.75	118.02	-1.0324					77	36	3	0	0	0	0.35444	1	8779	8779		56.721	1.9447	1	174560	+		38814	27877	32037	32060	42134	42134					0.028549988992608633
MSPAVLKSE	9	Unmodified	_MSPAVLKSE_					0	0	0		nc|ENSG00000182872|P98175-4|RBM10;nc|ENSG00000182872|P98175-3|RBM10;nc|ENSG00000182872|P98175-2|RBM10;ENSG00000182872|ENST00000377604|RBM10;nc|ENSG00000182872|P98175-5|RBM10	nc|ENSG00000182872|P98175-4|RBM10	nc|ENSG00000182872|P98175-4|RBM10	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2884826660156	2	481.254785	960.495018	1.6645	0.00080104	0.43681	0.00021022	2.1013	0.0010113	481.2548589784638	106.98	0.38319	106.98	106.76	107.14	0					15	8	2	0	0	0	0.027462	1	12065	12065		30.504	0	1	290650			38815	8032	32038	32061	42135	42135					0.013190054429401243
MSPECEEPP	9	Unmodified	_MSPECEEPP_					0	0	0		ENST00000412770.6_2_19:55758457-55769842:-|nuORF	ENST00000412770.6_2_19:55758457-55769842:-|nuORF	ENST00000412770.6_2_19:55758457-55769842:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.2973327636719	2	509.696443	1017.37833	-0.50383	-0.0002568	0.3351	0.0001708	-0.16874	-8.6005E-05	509.69656228325573	98.974	0.7774	96.648	96.33	97.108	-2.3253					21	14	2	0	0	0	0.027462	1	8856	8856		30.504	0	1	23713			38816	11553	32039	32062	42136	42136					-0.12966100839139472
MSPGFPKKLN	10	Unmodified	_MSPGFPKKLN_					0	0	0		nc|ENSG00000123342|Q99542-3|MMP19;ENST00000547685.5_1_12:56230822-56232389:-|nuORF;ENSG00000123342|ENST00000322569|MMP19;ENST00000548882.5_1_12:56231335-56231545:-|nuORF;MMP19|p.A383Lfs*24|1|0.04|ENSG00000123342|chr12:55837596-55837596|C/-|frameshift_variant	nc|ENSG00000123342|Q99542-3|MMP19	nc|ENSG00000123342|Q99542-3|MMP19	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.7760620117188	2	559.804977	1117.5954	2.9928	0.0016754	-2.3098	-0.001293	0.68298	0.00038233	559.8030192501953	121.52	0.93478	121.52	121.1	122.04	0					41	20	3	0	0	0	0.026956	1	14008	14008		14.137	0	1	183200			38817	3589	32040	32063	42137	42137					0.04130662496595505
MSPGSTVGPLF	11	Unmodified	_MSPGSTVGPLF_					0	0	0		ENST00000349394.5_1_12:57619789-57619912:+|nuORF	ENST00000349394.5_1_12:57619789-57619912:+|nuORF	ENST00000349394.5_1_12:57619789-57619912:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	546.7702026367188	2	546.773342	1091.53213	-0.79837	-0.00043653	-2.1444	-0.0011725	-2.9427	-0.001609	546.7719226833142	69.751	2.4854	69.751	69.307	71.792	0					171	61	5	0	0	0	0.28332	1	6743	6743		69.628	8.6557	1	5221100			38818	10646	32041	32064	42138	42138					-0.009973230113246245
MSPLRALIPLA	11	Unmodified	_MSPLRALIPLA_					0	0	0			REV__nc|ENSG00000126860|P22794-2|EVI2A	REV__nc|ENSG00000126860|P22794-2|EVI2A	MULTI-MSMS	OvCa9_classI_Rep4_	4	591.3607788085938	2	591.357376	1180.7002	2.5475	0.0015065	2.0145	0.0011913	4.562	0.0026978	591.3582010005824	130.25	0.78531	128.77	128.56	129.35	-1.4779					27	15	2	0	0	0	0.4646	1	12497	12497		56.434	1.7114	1	156150	+		38819	28836	32042	32065	42139	42139					0.11707783973156438
MSRHSRLQ	8	Unmodified	_MSRHSRLQ_					0	0	0		ENSG00000205138|ENST00000378887|SDHAF1	ENSG00000205138|ENST00000378887|SDHAF1	ENSG00000205138|ENST00000378887|SDHAF1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7660827636719	2	507.766717	1013.51888	0.43978	0.0002233	-0.99853	-0.00050702	-0.55875	-0.00028372	507.76605298589374	131.19	1.6749	130.96	130.26	131.93	-0.22696					79	33	3	0	0	0	0.74754	1	12953	12953		27.882	4.8398	1	124560			38820	9055	32043	32066	42140	42140					0.012662837199513888
MSRKLAKRHR	10	Unmodified	_MSRKLAKRHR_					0	0	0			REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|138|3|sense	REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|138|3|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8821411132812	2	641.88549	1281.75643	-5.3554	-0.0034376	0.82012	0.00052643	-4.5353	-0.0029111	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.79917	1	13194	13194		19.104	0	1	804890	+		38821	28465	32044	32067	42141	42141					0.1268184965315413
MSRPGAAALA	10	Unmodified	_MSRPGAAALA_					0	0	0			REV__ENST00000485807.1_1_1:227921248-227921521:-|nuORF	REV__ENST00000485807.1_1_1:227921248-227921521:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.75396728515625	2	472.752744	943.490935	1.0184	0.00048145	-0.80801	-0.00038199	0.21039	9.9461E-05	472.75234742263694	64.577	1.9384	61.091	60.24	62.179	-3.4854					97	39	4	0	0	0	0.37436	1	4598	4598		71.877	4.3838	1	3821600	+		38822	26571	32045	32068	42142	42142					0.01692960739865157
MSRPLLITFT	10	Unmodified	_MSRPLLITFT_					0	0	0		ENSG00000204438|ENST00000375896|GPANK1	ENSG00000204438|ENST00000375896|GPANK1	ENSG00000204438|ENST00000375896|GPANK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.8338012695312	2	589.833734	1177.65292	-1.3892	-0.0008194	2.0867	0.0012308	0.69746	0.00041138	589.8346915033269	118.83	1.2492	117.49	117.15	118.4	-1.3444					51	23	4	0	0	0	0.58067	1	11147	11147		44.377	1.981	1	186330			38823	8984	32046	32069	42143	42143					0.07119504702131962
MSRPLLITFT	10	Unmodified	_MSRPLLITFT_					0	0	0		ENSG00000204438|ENST00000375896|GPANK1	ENSG00000204438|ENST00000375896|GPANK1	ENSG00000204438|ENST00000375896|GPANK1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	589.833734	1177.65292	-1.5583	-0.00091913	1.6587	0.00097836	0.10042	5.9231E-05	589.8344409197882	117.49	0.99216	117.36	117.11	118.1	-0.12868	-0.092909	-0.00013773	NaN	44.377	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92113			38824	8984	32046	32069							0.07119504702131962
MSRPLLITFT	10	Unmodified	_MSRPLLITFT_					0	0	0		ENSG00000204438|ENST00000375896|GPANK1	ENSG00000204438|ENST00000375896|GPANK1	ENSG00000204438|ENST00000375896|GPANK1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	589.833734	1177.65292	-1.0838	-0.00063929	1.5837	0.00093413	0.49988	0.00029484	589.8344749491181	118.53	1.3891	117.51	117.29	118.68	-1.0271	0.055889	-0.00022619	NaN	44.377	57	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154990			38825	8984	32046	32069							0.07119504702131962
MSRRLLIIGY	10	Unmodified	_MSRRLLIIGY_					0	0	0		ENST00000520664.1_1_5:159845875-159845974:-|nuORF	ENST00000520664.1_1_5:159845875-159845974:-|nuORF	ENST00000520664.1_1_5:159845875-159845974:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	611.355712890625	2	611.36045	1220.70635	-3.1571	-0.0019301	-3.9744	-0.0024298	-7.1315	-0.0043599	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.70152	1	12701	12701		30.318	1.1477	1	666990			38826	13111	32047	32070	42144	42144					0.10482302204673033
MSSDHLNNS	9	Unmodified	_MSSDHLNNS_					0	0	0		ENST00000592812.1_1_18:13612697-13615812:+|nuORF;nc|ENSG00000168675|O15165-7|LDLRAD4;nc|ENSG00000168675|O15165-6|LDLRAD4	ENST00000592812.1_1_18:13612697-13615812:+|nuORF	ENST00000592812.1_1_18:13612697-13615812:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.31005859375	2	502.708731	1003.40291	1.1488	0.00057753	-2.4932	-0.0012534	-1.3444	-0.00067583	502.7073803498088	145.54	0.70364	145.54	145.27	145.98	0					27	14	3	0	0	0	0.027462	1	16989	16989		40.778	17.741	1	74191			38827	14139	32048	32071	42145	42145					-0.09865704641390494
MSSESTWD	8	Unmodified	_MSSESTWD_					0	0	0		ENSG00000198842|ENST00000361200|STYXL2	ENSG00000198842|ENST00000361200|STYXL2	ENSG00000198842|ENST00000361200|STYXL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.2940673828125	2	471.679108	941.343662	2.4971	0.0011778	3.0094	0.0014195	5.5065	0.0025973	471.68039283067174	84.325	0.46104	84.325	84.051	84.512	0					16	10	2	0	0	0	0.028476	1	8790	8790		47.916	7.1374	1	495060			38828	8887	32049	32072	42146	42146					-0.12935600655600865
MSSQPEKQRQW	11	Unmodified	_MSSQPEKQRQW_					0	0	0			REV__ENST00000418635.6_1_6:35378793-35391776:+|nuORF	REV__ENST00000418635.6_1_6:35378793-35391776:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	469.3075866699219	3	468.894471	1403.66158	0.027581	1.2933E-05	-0.64873	-0.00030419	-0.62115	-0.00029125	468.8941789134145	110.34	0.64225	110.17	109.96	110.6	-0.17237					29	12	3	0	0	0	0.026277	1	10392	10392		23.378	5.9099	1	26550	+		38829	24839	32050	32073	42147	42147					-0.024101733993120433
MSSQPEKQRQW	11	Unmodified	_MSSQPEKQRQW_					0	0	0			REV__ENST00000418635.6_1_6:35378793-35391776:+|nuORF	REV__ENST00000418635.6_1_6:35378793-35391776:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	468.894471	1403.66158	0.83715	0.00039254	-1.2584	-0.00059005	-0.42124	-0.00019752	468.8937698840229	111.44	0.79016	109.93	109.74	110.53	-1.5111	-0.10234	-3.4366E-05	NaN	17.833	20	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38166	+		38830	24839	32050	32073							-0.024101733993120433
MSSRRGSLRPP	11	Unmodified	_MSSRRGSLRPP_					0	0	0		ENST00000357103.4_1_12:1893093-1893132:+|nuORF	ENST00000357103.4_1_12:1893093-1893132:+|nuORF	ENST00000357103.4_1_12:1893093-1893132:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	622.3366088867188	2	622.338038	1242.66152	-4.5737	-0.0028464	2.1426	0.0013334	-2.4311	-0.001513	622.339183148381	154	0.88074	153.78	153.46	154.34	-0.22697					51	17	4	0	0	0	0.72479	1	15715	15715		18.262	0.89712	1	92153			38831	10712	32051	32074	42148	42148					0.0498987139133078
MSSTMTLIIHA	11	Unmodified	_MSSTMTLIIHA_					0	0	0			REV__tr|A0A7D7A2Y2|A0A7D7A2Y2_9CLOTLowmolecularweightproteinargininephosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_19550PE=3SV=1	REV__tr|A0A7D7A2Y2|A0A7D7A2Y2_9CLOTLowmolecularweightproteinargininephosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_19550PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	602.6727294921875	2	602.806859	1203.59917	1.8508	0.0011157	4.4288	0.0026697	6.2797	0.0037854	603.3117633945664	129.98	0.79729	129.98	129.4	130.2	0					38	16	4	0	0	0	0.025611	1	15036	15036		27.882	18.699	1	209180	+		38832	32558	32052	32075	42149	42149					0.005509642081733546
MSTHQLTIT	9	Unmodified	_MSTHQLTIT_					0	0	0		ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.7874145507812	2	516.263142	1030.51173	0.16258	8.3936E-05	-1.9575	-0.0010106	-1.7949	-0.00092665	516.2620865075419	78.237	0.75745	75.885	75.647	76.404	-2.3527					19	14	2	0	0	0	0.027118	1	4177	4177		84.916	8.1414	1	16916			38833	9585	32053	32076	42150	42150					-0.0023049367111980246
MSTMDAVTSPS	11	Unmodified	_MSTMDAVTSPS_					0	0	0		tr|A0A7D7A0N4|A0A7D7A0N4_9CLOTDNApolymeraseIIIPolC-typeOS=ClostridiumintestinaleOX=36845GN=polCPE=3SV=1	tr|A0A7D7A0N4|A0A7D7A0N4_9CLOTDNApolymeraseIIIPolC-typeOS=ClostridiumintestinaleOX=36845GN=polCPE=3SV=1	tr|A0A7D7A0N4|A0A7D7A0N4_9CLOTDNApolymeraseIIIPolC-typeOS=ClostridiumintestinaleOX=36845GN=polCPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	563.7431030273438	2	563.741382	1125.46821	1.6239	0.00091544	-1.7101	-0.00096407	-0.086272	-4.8635E-05	563.7403719970913	145.67	0.54584	145.67	145.43	145.98	0					18	10	2	0	0	0	0.60323	1	17037	17037		44.377	0	1	90343			38834	36001	32054	32077	42151	42151					-0.08950471230559742
MSTNVMLDS	9	Unmodified	_MSTNVMLDS_					0	0	0			REV__tr|A0A7D6VNW0|A0A7D6VNW0_9CLOTLTAsynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19795PE=3SV=1	REV__tr|A0A7D6VNW0|A0A7D6VNW0_9CLOTLTAsynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19795PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.25091552734375	2	499.220085	996.425618	-0.48424	-0.00024174	4.3426	0.0021679	3.8583	0.0019262	499.22229279029085	39.04	0.17984	39.04	38.927	39.107	0					5	3	2	0	0	0	0.027462	1	2272	2272		16.473	0	1	31381	+		38835	31209	32055	32078	42152	42152					-0.07273821568151106
MSTTAPKMKT	10	Unmodified	_MSTTAPKMKT_					0	0	0		nc|ENSG00000180483|Q8N690-2|DEFB119	nc|ENSG00000180483|Q8N690-2|DEFB119	nc|ENSG00000180483|Q8N690-2|DEFB119	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.2950439453125	2	548.280477	1094.5464	0.51792	0.00028396	-3.3158	-0.001818	-2.7979	-0.001534	548.2803438977595	33.913	0.54564	31.125	31.003	31.548	-2.7881					19	10	3	0	0	0	0.02663	1	961	961		21.686	0.73882	1	57010			38836	15205	32056	32079	42153	42153					0.0029100614533490443
MSTVKLKSH	9	Unmodified	_MSTVKLKSH_					0	0	0			REV__nc|ENSG00000187079|P28347-2|TEAD1	REV__nc|ENSG00000187079|P28347-2|TEAD1	MULTI-MSMS	OvCa9_classI_Rep2	2	515.7869873046875	2	515.789327	1029.5641	0.015208	7.8439E-06	-3.8874	-0.0020051	-3.8722	-0.0019972	515.7873046158662	78.2	1.7356	76.46	75.672	77.408	-1.7398					60	30	3	0	0	0	0.2077	3	6513	6502;6513;6531		75.043	17.232	1	581100	+		38837	29058	32057	32080	42154;42155;42156	42155					0.050500894624974535
MSTVKLKSH	9	Unmodified	_MSTVKLKSH_					0	0	0			REV__nc|ENSG00000187079|P28347-2|TEAD1	REV__nc|ENSG00000187079|P28347-2|TEAD1	MULTI-MSMS	OvCa9_classI_Rep3	3	515.787353515625	2	515.789327	1029.5641	0.18906	9.7516E-05	-4.0335	-0.0020804	-3.8444	-0.0019829	515.7872662216187	78.378	1.3926	76.025	75.698	77.091	-2.3527					57	27	3	0	0	0	0.094616	3	4158	4158;4177;4197		98.629	4.623	1	1459700	+		38838	29058	32057	32080	42157;42158;42159	42157					0.050500894624974535
MSTVKLKSH	9	Unmodified	_MSTVKLKSH_					0	0	0			REV__nc|ENSG00000187079|P28347-2|TEAD1	REV__nc|ENSG00000187079|P28347-2|TEAD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7884521484375	2	515.789327	1029.5641	-0.38281	-0.00019745	-4.0671	-0.0020978	-4.4499	-0.0022952	515.7871246008007	79.113	1.1903	76.361	76.038	77.228	-2.7514					54	24	4	0	0	0	0.064985	4	6418	6394;6405;6418;6430		110.12	35.27	1	1499800	+		38839	29058	32057	32080	42160;42161;42162;42163	42162					0.050500894624974535
MSTVSCRRAM	10	Unmodified	_MSTVSCRRAM_					0	0	0			REV__ENSG00000124198|ENST00000371917|ARFGEF2	REV__ENSG00000124198|ENST00000371917|ARFGEF2	MULTI-SECPEP	OvCa9_classI_Rep2	2	570.8209228515625	2	571.267378	1140.5202	-0.74561	-0.00042595	3.2242	0.0018419	2.4786	0.001416	571.2691008221298	83.159	1.0552	81.56	81.167	82.222	-1.5988					51	21	3	0	0	0	0.026551	1	7157	7157		51.193	0	1	168490	+		38840	18671	32058	32081	42164	42164					-0.04443586297793445
MSVCVCAGMA	10	Carbamidomethyl (C),Oxidation (M)	_MSVC(Carbamidomethyl (C))VCAGM(Oxidation (M))A_	MSVC(1)VCAGMA	MSVCVCAGM(1)A	MSVC(50)VC(-50)AGMA	M(-97)SVCVCAGM(97)A	0	1	1		ENST00000458207.5_1_1:39994707-40002877:-|nuORF	ENST00000458207.5_1_1:39994707-40002877:-|nuORF	ENST00000458207.5_1_1:39994707-40002877:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8017578125	2	522.702691	1043.39083	1.6201	0.00084681	3.5908	0.0018769	5.2108	0.0027237	522.7045390384684	100.17	0.59004	100.17	99.939	100.53	0					23	13	2	0	0	0	0.027312	1	11117	11117		97.473	49.557	4	643940			38841	12136	32059	32082	42165	42165	139	332			-0.12913103972118734
MSVENWNES	9	Unmodified	_MSVENWNES_					0	0	0		ENSG00000149050|ENST00000278314|ZNF214	ENSG00000149050|ENST00000278314|ZNF214	ENSG00000149050|ENST00000278314|ZNF214	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.8035278320312	2	548.224214	1094.43387	0.25335	0.00013889	1.4906	0.00081717	1.7439	0.00095606	548.225412009148	114.84	0.97124	113.44	113.15	114.12	-1.3977					31	18	3	0	0	0	0.027462	1	10685	10685		14.865	0	1	28791			38842	5436	32060	32083	42166	42166					-0.10956551327171837
MSVGQSVIKV	10	Unmodified	_MSVGQSVIKV_					0	0	0			REV__tr|A0A7D6VMF9|A0A7D6VMF9_9CLOTFe-SclusterassemblyATPaseSufCOS=ClostridiumintestinaleOX=36845GN=sufCPE=3SV=1	REV__tr|A0A7D6VMF9|A0A7D6VMF9_9CLOTFe-SclusterassemblyATPaseSufCOS=ClostridiumintestinaleOX=36845GN=sufCPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.3340454101562	2	524.296985	1046.57942	1.4821	0.00077708	-0.80322	-0.00042113	0.6789	0.00035595	524.2966576446076	129.19	0.56424	129.19	128.93	129.5	0					16	11	2	0	0	0	0.026519	1	14954	14954		68.846	8.7279	1	81130	+		38843	31132	32061	32084	42167	42167					0.05798956259695842
MSVLGGPLIV	10	Unmodified	_MSVLGGPLIV_					0	0	0			REV__ENSG00000100207|ENST00000677622|TCF20	REV__ENSG00000100207|ENST00000677622|TCF20	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.31805419921875	2	493.291171	984.567789	-0.28311	-0.00013966	2.4021	0.0011849	2.1189	0.0010453	493.2925509048069	103.73	0.88979	103.15	102.83	103.72	-0.57639					28	17	2	0	0	0	0.026747	1	9573	9573		115.46	21.453	1	28108	+		38844	17379	32062	32085	42168	42168					0.07488759236343867
MSVLMNTIV	9	Unmodified	_MSVLMNTIV_					0	0	0		ENSG00000204764|ENST00000523189|RANBP17;ENST00000522533.5_1_5:170395310-170725859:+|nuORF;ENST00000519949.5_1_5:170395310-170725859:+|nuORF	ENSG00000204764|ENST00000523189|RANBP17	ENSG00000204764|ENST00000523189|RANBP17	MULTI-MSMS	OvCa99_classI_Rep5	1	504.2676086425781	2	504.266838	1006.51912	1.2226	0.00061653	1.1994	0.00060484	2.4221	0.0012214	504.2671580041286	146.2	0.69106	146.2	145.93	146.62	0					26	13	3	0	0	0	0.21231	1	17116	17116		74.255	5.4682	1	128110			38845	9028	32063	32086	42169	42169					0.016125226049439334
MSVLRPLDK	9	Unmodified	_MSVLRPLDK_					0	0	0		ENST00000460824.1_1_22:42342419-42343080:-|nuORF;nc|ENSG00000100162|Q9NSP4-4|CENPM;nc|ENSG00000100162|Q9NSP4-2|CENPM;ENST00000396437.3_1_22:42341142-42343146:-|nuORF;ENSG00000100162|ENST00000215980|CENPM	ENST00000460824.1_1_22:42342419-42343080:-|nuORF	ENST00000460824.1_1_22:42342419-42343080:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.306640625	2	529.804977	1057.5954	0.26975	0.00014291	2.8945	0.0015335	3.1643	0.0016765	529.8064820971168	104.58	0.83017	103.15	102.76	103.59	-1.4347					38	15	3	0	0	0	0.027459	1	7328	7328		36.447	7.2767	1	672700			38846	2019	32064	32087	42170	42170					0.06890662496562072
MSVSMTMNGAV	11	Oxidation (M)	_MSVSMTM(Oxidation (M))NGAV_		MSVSM(0.121)TM(0.879)NGAV		M(-41)SVSM(-8.6)TM(8.6)NGAV	0	0	1		ENSG00000146085|ENST00000274813|MMUT	ENSG00000146085|ENST00000274813|MMUT	ENSG00000146085|ENST00000274813|MMUT	MULTI-MSMS	OvCa99_classI_Rep5	1	572.245361328125	2	572.245777	1142.477	1.507	0.00086235	-2.8542	-0.0016333	-1.3473	-0.00077098	572.2439466102973	111.1	1.1227	111.1	110.8	111.93	0					53	24	4	0	0	0	0.39237	1	12606	12606		61.691	8.7546	3	3022100			38847	5265	32065	32088	42171	42171		170			-0.08853820865738271
MSVSMTMNGAV	11	Oxidation (M)	_MSVSMTM(Oxidation (M))NGAV_					0	0	1		ENSG00000146085|ENST00000274813|MMUT	ENSG00000146085|ENST00000274813|MMUT	ENSG00000146085|ENST00000274813|MMUT	MULTI-MATCH	OvCa9_classI_Rep2	2		2	572.245777	1142.477	-0.53141	-0.0003041	-3.4978	-0.0020016	-4.0292	-0.0023057	572.2440363536599	111.3	0.29568	111.16	111.03	111.32	-0.13961	0.081984	-0.00047997	NaN	61.691	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13914			38848	5265	32065	32088				170			-0.08853820865738271
MSVSMTMNGAV	11	Oxidation (M)	_MSVSMTM(Oxidation (M))NGAV_					0	0	1		ENSG00000146085|ENST00000274813|MMUT	ENSG00000146085|ENST00000274813|MMUT	ENSG00000146085|ENST00000274813|MMUT	MULTI-MATCH	OvCa9_classI_Rep3	3		2	572.245777	1142.477	1.4077	0.00080555	-4.7877	-0.0027397	-3.38	-0.0019342	572.2432137337311	112.08	0.49253	110.98	110.8	111.29	-1.1038	-0.10395	-0.0019563	NaN	61.691	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9927.4			38849	5265	32065	32088				170			-0.08853820865738271
MSVTFIGNN	9	Unmodified	_MSVTFIGNN_					0	0	0		ENST00000415481.1_1_1:809210-809726:+|nuORF	ENST00000415481.1_1_1:809210-809726:+|nuORF	ENST00000415481.1_1_1:809210-809726:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.7611083984375	2	491.73676	981.458967	-0.45379	-0.00022314	0.20199	9.9324E-05	-0.2518	-0.00012382	491.73674321619774	70.292	1.1197	66.811	66.249	67.369	-3.4812					39	22	2	0	0	0	0.027433	1	5242	5242		45.972	8.9438	1	67023			38850	11589	32066	32089	42172	42172					-0.032504517339248196
MSVTFIGNN	9	Unmodified	_MSVTFIGNN_					0	0	0		ENST00000415481.1_1_1:809210-809726:+|nuORF	ENST00000415481.1_1_1:809210-809726:+|nuORF	ENST00000415481.1_1_1:809210-809726:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	491.73676	981.458967	0.041937	2.0622E-05	-0.40652	-0.0001999	-0.36458	-0.00017928	491.7364386248763	69.405	0.7493	66.785	66.366	67.115	-2.6203	-0.013247	-0.00032819	NaN	45.972	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17781			38851	11589	32066	32089							-0.032504517339248196
MSVVPRLVQ	9	Unmodified	_MSVVPRLVQ_					0	0	0			REV__chr16:28830790-28832205|105|14.49|0.3|5.59|+|0|ATXN2L,ATXN2L|1	REV__chr16:28830790-28832205|105|14.49|0.3|5.59|+|0|ATXN2L,ATXN2L|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	514.81689453125	2	514.799694	1027.58484	-0.90795	-0.00046741	-1.5273	-0.00078624	-2.4352	-0.0012537	514.7987991548995	116.98	1.0387	116.86	116.52	117.56	-0.12869					44	20	3	0	0	0	0.027462	1	11225	11225		47.657	16.128	1	98221	+		38852	15929	32067	32090	42173	42173					0.07214679842149962
MSWAPVLLM	9	Acetyl (Protein N-term),2 Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))SWAPVLLM(Oxidation (M))_		M(1)SWAPVLLM(1)		M(68)SWAPVLLM(68)	1	0	2		ENSG00000169575|ENST00000403807|VPREB1	ENSG00000169575|ENST00000403807|VPREB1	ENSG00000169575|ENST00000403807|VPREB1	MULTI-MSMS	OvCa99_classI_Rep5	1	561.2725219726562	2	561.272121	1120.52969	2.7742	0.0015571	-1.1758	-0.00065993	1.5985	0.00089717	561.2709618562402	122.05	0.46696	122.05	121.75	122.22	0					22	9	3	0	0	0	0.25214	1	14056	14056		68.485	7.5128	1	129250			38853	7020	32068	32091	42174	42174		215;216			-0.025754947406312567
MSWIIGGIV	9	Unmodified	_MSWIIGGIV_					0	0	0			REV__ENSG00000162399|ENST00000651561|BSND	REV__ENSG00000162399|ENST00000651561|BSND	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.2694396972656	2	488.270238	974.525924	-0.66992	-0.0003271	-3.0204	-0.0014748	-3.6904	-0.0018019	488.26881844340147	71.073	1.7956	67.617	67.251	69.047	-3.4563					76	36	3	0	0	0	0.25214	1	5398	5398		68.485	8.1907	1	1035500	+		38854	20731	32069	32092	42175	42175					0.037642035478484104
MSYGLGKWV	9	Unmodified	_MSYGLGKWV_					0	0	0			REV__tr|A0A553SF59|A0A553SF59_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08270PE=3SV=1	REV__tr|A0A553SF59|A0A553SF59_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08270PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	520.7666625976562	2	520.76532	1039.51609	-0.29569	-0.00015399	2.3423	0.0012198	2.0466	0.0010658	520.7664487988831	76.367	3.2453	74.513	73.837	77.082	-1.854					155	62	5	0	0	0	0.33652	1	6316	6316		58.782	3.2778	1	1235300	+		38855	29537	32070	32093	42176	42176					-0.002089844575493771
MTAISASTLG	10	Unmodified	_MTAISASTLG_					0	0	0		ENST00000403018.2_2_7:69364353-69755408:+|nuORF;ENST00000406775.6_2_7:69364353-70163597:+|nuORF	ENST00000403018.2_2_7:69364353-69755408:+|nuORF	ENST00000403018.2_2_7:69364353-69755408:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.2837219238281	2	476.244418	950.474282	0.0088035	4.1926E-06	2.2841	0.0010878	2.2929	0.001092	476.2435597523978	52.978	0.25798	52.978	52.873	53.131	0					6	5	2	0	0	0	0.026891	1	4201	4201		24.519	15.697	1	81767			38856	11437	32071	32094	42177	42177					-0.0029358493674180863
MTAISASTLG	10	Unmodified	_MTAISASTLG_					0	0	0		ENST00000403018.2_2_7:69364353-69755408:+|nuORF;ENST00000406775.6_2_7:69364353-70163597:+|nuORF	ENST00000403018.2_2_7:69364353-69755408:+|nuORF	ENST00000403018.2_2_7:69364353-69755408:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	476.244418	950.474282	0.39655	0.00018885	7.9417	0.0037822	8.3383	0.003971	476.2480343491489	56.344	1.0125	53.05	52.819	53.832	-3.2944	0.035992	0.0010974	NaN	24.519	38	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52808			38857	11437	32071	32094							-0.0029358493674180863
MTALPVTVTD	10	Unmodified	_MTALPVTVTD_					0	0	0			REV__NALCN|p.P1236T|1|0.67|ENSG00000102452|chr13:101082868-101082868|G/T|missense_variant	REV__NALCN|p.P1236T|1|0.67|ENSG00000102452|chr13:101082868-101082868|G/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.3223876953125	2	524.273175	1046.5318	3.2362	0.0016966	3.8115	0.0019983	7.0477	0.0036949	524.2750871236741	132.86	0.83124	131.36	131.1	131.93	-1.5014					28	16	3	0	0	0	0.026635	1	12807	12807		31.53	0	1	35944	+		38858	28696	32072	32095	42178	42178					0.010392572688488144
MTALTAIFPA	10	Unmodified	_MTALTAIFPA_					0	0	0			REV__tr|A0A553SUQ8|A0A553SUQ8_NIACIRiboseABCtransporterpermeaseOS=NialliacirculansOX=1397GN=rbsCPE=4SV=1	REV__tr|A0A553SUQ8|A0A553SUQ8_NIACIRiboseABCtransporterpermeaseOS=NialliacirculansOX=1397GN=rbsCPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	518.278076171875	2	518.280803	1034.54705	0.30513	0.00015814	-4.3861	-0.0022733	-4.081	-0.0021151	518.2776323156559	105.62	0.96203	105.62	105.22	106.18	0					40	21	3	0	0	0	0.46756	1	11885	11885		58.782	5.4305	1	2576400	+		38859	31111	32073	32096	42179	42179					0.031161688566726298
MTALTAIFPA	10	Unmodified	_MTALTAIFPA_					0	0	0			REV__tr|A0A553SUQ8|A0A553SUQ8_NIACIRiboseABCtransporterpermeaseOS=NialliacirculansOX=1397GN=rbsCPE=4SV=1	REV__tr|A0A553SUQ8|A0A553SUQ8_NIACIRiboseABCtransporterpermeaseOS=NialliacirculansOX=1397GN=rbsCPE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	518.280803	1034.54705	0.30513	0.00015814	-4.3861	-0.0022733	-4.081	-0.0021151	518.2776323156559	105.62	0.96203	105.62	105.22	106.18	0	0	0	NaN	58.782	40	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2576400	+		38860	31111	32073	32096							0.031161688566726298
MTANLKWLTD	10	Unmodified	_MTANLKWLTD_					0	0	0			REV__nc|ENSG00000128052|P35968-2|KDR	REV__nc|ENSG00000128052|P35968-2|KDR	MULTI-MSMS	OvCa9_classI_Rep4_	4	596.8016357421875	2	596.805174	1191.59579	0.66962	0.00039963	-4.2021	-0.0025078	-3.5325	-0.0021082	596.8023166988784	59.686	2.8765	56.294	55.2	58.076	-3.392					159	57	4	0	0	0	0.72142	1	3989	3989		28.081	0.19925	1	499910	+		38861	18839	32074	32097	42180	42180					0.0076603742575116485
MTAPTDTPAR	10	Unmodified	_MTAPTDTPAR_					0	0	0		ENST00000479562.1_1_6:30609628-30613691:+|nuORF	ENST00000479562.1_1_6:30609628-30613691:+|nuORF	ENST00000479562.1_1_6:30609628-30613691:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.3207397460938	2	530.758223	1059.50189	0.99401	0.00052758	1.195	0.00063424	2.189	0.0011618	530.7587468371074	154.25	0.4425	154.25	153.98	154.42	0					15	8	2	0	0	0	0.027028	1	18057	18057		8.2351	0	1	32221			38862	12506	32075	32098	42181	42181					-0.025476816765149124
MTASLGTSISM	11	Unmodified	_MTASLGTSISM_					0	0	0			REV__ENSG00000109805|ENST00000251496|NCAPG	REV__ENSG00000109805|ENST00000251496|NCAPG	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.3482666015625	2	549.762117	1097.50968	0.60121	0.00033052	1.6861	0.00092697	2.2873	0.0012575	549.7628389701708	158.61	1.5675	158.61	158.19	159.76	0					46	32	2	0	0	0	0.025257	1	18653	18653		29.17	0	1	26036	+		38863	17953	32076	32099	42182	42182					-0.03517290471222623
MTATQESRGNI	11	Unmodified	_MTATQESRGNI_					0	0	0		nc|ENSG00000254838|Q7Z2Y8|GVINP1;ENST00000526769.3_1_11:6735844-6741409:-|nuORF	nc|ENSG00000254838|Q7Z2Y8|GVINP1	nc|ENSG00000254838|Q7Z2Y8|GVINP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	403.6784973144531	3	403.196038	1206.56629	1.296	0.00052255	-2.7954	-0.0011271	-1.4994	-0.00060455	403.19483349739716	58.496	0.48958	58.496	58.322	58.812	0					20	11	3	0	0	0	0.02557	1	4961	4961		21.78	0	1	402450			38864	15353	32077	32100	42183	42183					-0.028735265903378604
MTCGAPGMLHA	11	Unmodified	_MTCGAPGMLHA_					0	0	0			REV__ENST00000484420.1_1_1:3731968-3732952:-|nuORF	REV__ENST00000484420.1_1_1:3731968-3732952:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.7720336914062	2	544.737922	1087.46129	0.3309	0.00018025	3.4578	0.0018836	3.7887	0.0020639	544.7395003126418	162.3	0.30219	162.3	162.07	162.38	0					9	5	2	0	0	0	0.0253	1	19034	19034		51.335	0	1	18220	+		38865	18291	32078	32101	42184	42184					-0.07894062592117734
MTDFYKFP	8	Unmodified	_MTDFYKFP_					0	0	0			REV__tr|A0A7D6VWK5|A0A7D6VWK5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04500PE=4SV=1	REV__tr|A0A7D6VWK5|A0A7D6VWK5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04500PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2985229492188	2	524.744053	1047.47355	1.3421	0.00070424	0.26413	0.0001386	1.6062	0.00084284	524.7462714205583	92.457	0.25117	92.457	92.343	92.594	0					6	4	2	0	0	0	0.028476	1	10013	10013		31.955	18.18	1	134910	+		38866	31750	32079	32102	42185	42185					-0.04828379585774201
MTDFYKFP	8	Unmodified	_MTDFYKFP_					0	0	0			REV__tr|A0A7D6VWK5|A0A7D6VWK5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04500PE=4SV=1	REV__tr|A0A7D6VWK5|A0A7D6VWK5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04500PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2985229492188	2	524.744053	1047.47355	1.7649	0.00092613	-1.1228	-0.0005892	0.64208	0.00033693	525.2453611529236	92.724	0.49654	92.724	92.515	93.011	0					19	11	2	0	0	0	0.028476	1	10013	10013		31.955	18.18	1	237800	+		38867	31750	32079	32102	42186	42186					-0.04828379585774201
MTFDPTAQ	8	Unmodified	_MTFDPTAQ_					0	0	0		ENST00000335793.3_1_17:71281434-71281572:-|nuORF	ENST00000335793.3_1_17:71281434-71281572:-|nuORF	ENST00000335793.3_1_17:71281434-71281572:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	455.7584228515625	2	455.702386	909.390218	-0.26756	-0.00012193	3.9327	0.0017921	3.6651	0.0016702	455.7045833999413	42.656	0.34136	42.656	42.412	42.753	0					11	7	2	0	0	0	0.028476	1	2759	2759		53.351	14.545	1	35228			38868	10504	32080	32103	42187	42187					-0.06810116033648228
MTFFTELENT	10	Oxidation (M)	_M(Oxidation (M))TFFTELENT_		M(1)TFFTELENT		M(44)TFFTELENT	0	0	1		L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|172|3|sense	L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|172|3|sense	L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|172|3|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	416.8546447753906	3	416.853278	1247.538	-0.82266	-0.00034293	2.0028	0.00083486	1.1801	0.00049193	416.8540305081733	70.069	1.7985	66.588	66.201	67.999	-3.4812					90	36	4	0	0	0	0.58667	1	5277	5277		43.651	7.3331	1	572410			38869	14728	32081	32104	42188	42188		363			-0.07586269290322889
MTFFTELENT	10	Oxidation (M)	_M(Oxidation (M))TFFTELENT_					0	0	1		L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|172|3|sense	L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|172|3|sense	L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|172|3|sense	MULTI-MATCH	OvCa9_classI_Rep2	2		3	416.853278	1247.538	-0.16211	-6.7575E-05	1.5394	0.00064171	1.3773	0.00057414	416.85386086484664	69.027	1.8481	66.407	65.968	67.816	-2.6203	-0.090276	-0.0001754	NaN	43.651	102	36	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	439450			38870	14728	32081	32104				363			-0.07586269290322889
MTFNIPGPA	9	Unmodified	_MTFNIPGPA_					0	0	0			REV__ENST00000569826.2_1_15:42864283-42864628:+|nuORF	REV__ENST00000569826.2_1_15:42864283-42864628:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.2392883300781	2	474.236396	946.458238	0.31297	0.00014842	2.3207	0.0011005	2.6336	0.001249	474.23734812744584	48.21	1.0803	45.102	44.838	45.918	-3.1077					51	20	3	0	0	0	0.22961	1	2657	2657		71.296	7.9894	1	233610	+		38871	17491	32082	32105	42189	42189					-0.017132463829852895
MTFNRRFKN	9	Unmodified	_MTFNRRFKN_					0	0	0			REV__ENSG00000162949|ENST00000295055|CAPN13	REV__ENSG00000162949|ENST00000295055|CAPN13	MULTI-MSMS	OvCa9_classI_Rep2	2	607.3143920898438	2	607.316574	1212.6186	-0.66897	-0.00040628	-3.4592	-0.0021008	-4.1282	-0.0025071	607.3143684506753	105.84	1.7433	105.4	104.95	106.69	-0.43642					110	34	4	0	0	0	0.35694	2	9893	9846;9893		49.442	11.8	1	513880	+		38872	20795	32083	32106	42190;42191	42191					0.02079101333924882
MTFNRRFKN	9	Unmodified	_MTFNRRFKN_					0	0	0			REV__ENSG00000162949|ENST00000295055|CAPN13	REV__ENSG00000162949|ENST00000295055|CAPN13	MULTI-MSMS	OvCa9_classI_Rep4_	4	607.3154296875	2	607.316574	1212.6186	-1.2203	-0.00074109	-2.8968	-0.0017593	-4.1171	-0.0025004	607.314776519483	107.39	1.3422	105.51	105.17	106.51	-1.8785					88	26	5	0	0	0	0.16264	1	9825	9825		66.429	4.3219	1	1457500	+		38873	20795	32083	32106	42192	42192					0.02079101333924882
MTFTHRPE	8	Unmodified	_MTFTHRPE_					0	0	0		ENST00000447904.5_1_7:131011916-131012072:-|nuORF	ENST00000447904.5_1_7:131011916-131012072:-|nuORF	ENST00000447904.5_1_7:131011916-131012072:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.27325439453125	2	509.742376	1017.4702	0.35592	0.00018143	3.7135	0.0018929	4.0694	0.0020743	509.7437907789576	114.68	0.62924	113.29	113.04	113.67	-1.3977					21	11	3	0	0	0	0.028476	1	10692	10692		23.042	0	1	28421			38874	12014	32084	32107	42193	42193					-0.03783629639792707
MTFVLLIRG	9	Unmodified	_MTFVLLIRG_					0	0	0		ENST00000296490.7_1_3:52293770-52294423:-|nuORF	ENST00000296490.7_1_3:52293770-52294423:-|nuORF	ENST00000296490.7_1_3:52293770-52294423:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.26318359375	2	525.312438	1048.61032	1.8188	0.00095542	-2.2645	-0.0011896	-0.44575	-0.00023416	525.3109093636817	137.03	1.9633	137.03	136.73	138.69	0					60	41	3	0	0	0	0.027462	1	15951	15951		14.865	0	1	240490			38875	10136	32085	32108	42194	42194					0.0879615436460881
MTHNKLLPE	9	Unmodified	_MTHNKLLPE_					0	0	0		OPTN|p.Q398P|1|0.26|ENSG00000123240|chr10:13125990-13125990|A/C|missense_variant	OPTN|p.Q398P|1|0.26|ENSG00000123240|chr10:13125990-13125990|A/C|missense_variant	OPTN|p.Q398P|1|0.26|ENSG00000123240|chr10:13125990-13125990|A/C|missense_variant	MSMS	OvCa99_classI_Rep5	1	541.7916259765625	2	541.786784	1081.55902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.62	1	119.62	119.12	120.12	0								0	0	0	0.039743	1	13731	13731		82.241	18.934	1				38876	15449	32086	32109	42195	42195					0.02149785599885945
MTIEDEYSG	9	Unmodified	_MTIEDEYSG_					0	0	0		ENST00000527193.1_1_19:46878896-46886865:+|nuORF;ENSG00000011485|ENST00000012443|PPP5C	ENST00000527193.1_1_19:46878896-46886865:+|nuORF	ENST00000527193.1_1_19:46878896-46886865:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.3223876953125	2	522.713147	1043.41174	3.3827	0.0017682	-2.1382	-0.0011177	1.2445	0.0006505	523.2135448290875	132.8	0.53806	131.3	131	131.53	-1.5014					13	10	2	0	0	0	0.027462	1	12807	12807		30.504	0	1	9905.7			38877	968	32087	32110	42196	42196					-0.108227757955774
MTIESIKLLM	10	Oxidation (M)	_MTIESIKLLM(Oxidation (M))_		MTIESIKLLM(1)		M(-83)TIESIKLLM(83)	0	0	1			REV__ENSG00000113211|ENST00000231136|PCDHB6	REV__ENSG00000113211|ENST00000231136|PCDHB6	MULTI-MSMS	OvCa9_classI_Rep3	3	597.824462890625	2	597.82726	1193.63997	-3.9508	-0.0023619	-1.3087	-0.00078235	-5.2595	-0.0031443	597.8264327163745	153.21	0.96877	152.24	151.99	152.96	-0.97301					58	20	4	0	0	0	0.27679	1	13112	13112		83.647	21.54	2	209360	+		38878	18139	32088	32111	42197	42197		416			0.050893055277356325
MTIESIKLLM	10	Oxidation (M)	_MTIESIKLLM(Oxidation (M))_		MTIESIKLLM(1)		M(-66)TIESIKLLM(66)	0	0	1			REV__ENSG00000113211|ENST00000231136|PCDHB6	REV__ENSG00000113211|ENST00000231136|PCDHB6	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8240356445312	2	597.82726	1193.63997	-3.5409	-0.0021169	-2.0678	-0.0012362	-5.6087	-0.003353	597.8259099431253	153.72	1.0458	152.27	151.95	153	-1.4516					81	31	4	0	0	0	0.37436	1	15236	15236		71.877	15.444	2	181810	+		38879	18139	32088	32111	42198	42198		416			0.050893055277356325
MTIFGLLLK	9	Unmodified	_MTIFGLLLK_					0	0	0		tr|A0A553SMA7|A0A553SMA7_NIACIPTSgalactitoltransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_22100PE=4SV=1	tr|A0A553SMA7|A0A553SMA7_NIACIPTSgalactitoltransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_22100PE=4SV=1	tr|A0A553SMA7|A0A553SMA7_NIACIPTSgalactitoltransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_22100PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	518.318359375	2	518.317189	1034.61982	0.49653	0.00025736	1.4806	0.0007674	1.9771	0.0010248	518.3179257681784	139.8	5.0824	139.8	139.03	144.11	0					338	103	5	0	0	0	0.068524	1	16403	16403		108.09	3.3409	1	7167300			38880	33816	32089	32112	42199	42199					0.10389922650119843
MTIHLELLR	9	Unmodified	_MTIHLELLR_					0	0	0			REV__ENSG00000126890|ENST00000369585|CTAG2	REV__ENSG00000126890|ENST00000369585|CTAG2	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.76611328125	2	563.326076	1124.6376	-0.88786	-0.00050016	-1.1926	-0.00067183	-2.0805	-0.001172	563.8255219660815	43.774	0.38781	43.774	43.608	43.995	0					12	8	2	0	0	0	0.027462	1	2900	2900		19.997	0	1	63329	+		38881	18802	32090	32113	42200	42200					0.08026637904958989
MTIIGSILK	9	Unmodified	_MTIIGSILK_					0	0	0		MCOLN2|p.F420Vfs*15|1|0.17|ENSG00000153898|chr1:84937832-84937833|-/CCTTCCTCATCAACTTTCTTTAC|frameshift_variant;ENST00000531325.5_1_1:85403252-85462600:-|nuORF;nc|ENSG00000153898|Q8IZK6-2|MCOLN2;ENSG00000153898|ENST00000370608|MCOLN2	MCOLN2|p.F420Vfs*15|1|0.17|ENSG00000153898|chr1:84937832-84937833|-/CCTTCCTCATCAACTTTCTTTAC|frameshift_variant	MCOLN2|p.F420Vfs*15|1|0.17|ENSG00000153898|chr1:84937832-84937833|-/CCTTCCTCATCAACTTTCTTTAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.2973327636719	2	488.298996	974.583439	-1.012	-0.00049416	-2.4192	-0.0011813	-3.4312	-0.0016754	488.29763994024694	124.62	1.6404	123.23	122.82	124.46	-1.3908					82	31	4	0	0	0	0.44568	1	11806	11806		47.657	1.6851	1	255520			38882	5698	32091	32114	42201	42201					0.09513045753408278
MTILRLSFL	9	Unmodified	_MTILRLSFL_					0	0	0			REV__nc|ENSG00000133105|Q8WXD0-2|RXFP2	REV__nc|ENSG00000133105|Q8WXD0-2|RXFP2	MULTI-MSMS	OvCa9_classI_Rep2	2	547.32666015625	2	547.325545	1092.63654	-0.1345	-7.3618E-05	2.9942	0.0016388	2.8597	0.0015652	547.3271925205654	93.792	1.8234	92.692	92.225	94.048	-1.0995					97	35	4	0	0	0	0.40667	1	8389	8389		51.335	0	1	1121100	+		38883	19127	32092	32115	42202	42202					0.09392423536064598
MTILTVIIN	9	Unmodified	_MTILTVIIN_					0	0	0			REV__tr|A0A7D6ZE49|A0A7D6ZE49_9CLOTChromateeffluxtransporterOS=ClostridiumintestinaleOX=36845GN=chrAPE=3SV=1	REV__tr|A0A7D6ZE49|A0A7D6ZE49_9CLOTChromateeffluxtransporterOS=ClostridiumintestinaleOX=36845GN=chrAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.3077697753906	2	509.304278	1016.594	-0.745	-0.00037943	-2.0516	-0.0010449	-2.7966	-0.0014243	509.30313408160066	97.62	1.1572	95.861	95.517	96.674	-1.7595					44	22	3	0	0	0	0.027411	1	6456	6456		64.207	0.901	1	160180	+		38884	31939	32093	32116	42203	42203					0.08637028407827074
MTITIKRKQ	9	Unmodified	_MTITIKRKQ_					0	0	0		tr|A0A553SKF7|A0A553SKF7_NIACIYrzIfamilysmallproteinOS=NialliacirculansOX=1397GN=CEQ21_18775PE=4SV=1	tr|A0A553SKF7|A0A553SKF7_NIACIYrzIfamilysmallproteinOS=NialliacirculansOX=1397GN=CEQ21_18775PE=4SV=1	tr|A0A553SKF7|A0A553SKF7_NIACIYrzIfamilysmallproteinOS=NialliacirculansOX=1397GN=CEQ21_18775PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	560.3286743164062	2	559.839351	1117.66415	1.3486	0.000755	1.5154	0.00084839	2.864	0.0016034	560.3417709886253	158.21	0.84677	158.21	157.8	158.65	0					29	17	2	0	0	0	0.60342	1	18550	18550		31.53	1.6883	1	23375			38885	33611	32094	32117	42204	42204					0.11002326796278794
MTKEKEFYDEW	11	Unmodified	_MTKEKEFYDEW_					0	0	0		PDE6C|p.A403Vfs*32|1|0.17|ENSG00000095464|chr10:93634846-93634846|C/-|frameshift_variant;ENSG00000095464|ENST00000371447|PDE6C	PDE6C|p.A403Vfs*32|1|0.17|ENSG00000095464|chr10:93634846-93634846|C/-|frameshift_variant	PDE6C|p.A403Vfs*32|1|0.17|ENSG00000095464|chr10:93634846-93634846|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.808349609375	3	502.558754	1504.65443	-0.3422	-0.00017198	0.70827	0.00035595	0.36607	0.00018397	502.5589695372375	115.96	0.79198	114.59	114.3	115.09	-1.3645					40	15	4	0	0	0	0.026302	1	10828	10828		22.562	16.863	1	58501			38886	1929	32095	32118	42205	42205					-0.0777095079040464
MTKEKEFYDEW	11	Unmodified	_MTKEKEFYDEW_					0	0	0		PDE6C|p.A403Vfs*32|1|0.17|ENSG00000095464|chr10:93634846-93634846|C/-|frameshift_variant;ENSG00000095464|ENST00000371447|PDE6C	PDE6C|p.A403Vfs*32|1|0.17|ENSG00000095464|chr10:93634846-93634846|C/-|frameshift_variant	PDE6C|p.A403Vfs*32|1|0.17|ENSG00000095464|chr10:93634846-93634846|C/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		3	502.558754	1504.65443	-0.87346	-0.00043897	1.6815	0.00084505	0.80804	0.00040609	502.559530576074	114.97	0.78979	114.85	114.55	115.34	-0.11777	0.17319	0.00074203	NaN	22.562	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52045			38887	1929	32095	32118							-0.0777095079040464
MTKELILK	8	Unmodified	_MTKELILK_					0	0	0		ENST00000392133.7_1_2:217001880-217002818:+|nuORF	ENST00000392133.7_1_2:217001880-217002818:+|nuORF	ENST00000392133.7_1_2:217001880-217002818:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	488.29730224609375	2	488.298996	974.583439	0.36578	0.00017861	-3.7481	-0.0018302	-3.3823	-0.0016516	488.2969871349096	123.24	1.4299	123.02	122.61	124.04	-0.21803					76	28	4	0	0	0	0.57734	1	11953	11953		68.787	4.5796	1	196650			38888	11213	32096	32119	42206	42206					0.09513045753408278
MTKELILKSA	10	Unmodified	_MTKELILKSA_					0	0	0		ENST00000392133.7_1_2:217001880-217002818:+|nuORF	ENST00000392133.7_1_2:217001880-217002818:+|nuORF	ENST00000392133.7_1_2:217001880-217002818:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3295288085938	2	567.333567	1132.65258	-3.474	-0.0019709	-3.1892	-0.0018093	-6.6632	-0.0037803	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.70152	1	12023	12023		30.318	2.2362	1	458690			38889	11213	32097	32120	42207	42207					0.09156084982305401
MTKKNSTFV	9	Unmodified	_MTKKNSTFV_					0	0	0		ENSG00000128052|ENST00000263923|KDR;nc|ENSG00000128052|P35968-3|KDR;nc|ENSG00000128052|P35968-2|KDR	ENSG00000128052|ENST00000263923|KDR	ENSG00000128052|ENST00000263923|KDR	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.2813110351562	2	528.281334	1054.54812	0.071184	3.7605E-05	-0.3303	-0.00017449	-0.25912	-0.00013689	528.2810213022229	110.49	1.6308	108.88	108.23	109.86	-1.6011					80	30	3	0	0	0	0.55011	1	10161	10161		37.812	0.65241	1	451410			38890	3864	32098	32121	42208	42208					0.023023832256058085
MTKQDVLLL	9	Unmodified	_MTKQDVLLL_					0	0	0		tr|A0A553SNC4|A0A553SNC4_NIACIMurR/RpiRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_24115PE=4SV=1	tr|A0A553SNC4|A0A553SNC4_NIACIMurR/RpiRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_24115PE=4SV=1	tr|A0A553SNC4|A0A553SNC4_NIACIMurR/RpiRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_24115PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.236083984375	2	530.807185	1059.59982	-0.66464	-0.0003528	4.3593	0.002314	3.6947	0.0019612	530.8093990075911	37.679	0.81584	37.679	37.391	38.207	0					27	14	3	0	0	0	0.027462	1	2076	2076		31.53	5.9558	1	213550			38891	33915	32099	32122	42209	42209					0.07240126919509748
MTLDKDVPQS	10	Unmodified	_MTLDKDVPQS_					0	0	0		ENSG00000124713|ENST00000372808|GNMT	ENSG00000124713|ENST00000372808|GNMT	ENSG00000124713|ENST00000372808|GNMT	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.3016967773438	2	567.278989	1132.54342	-0.24652	-0.00013985	0.70402	0.00039938	0.4575	0.00025953	567.2811959177308	58.953	0.2634	58.953	58.892	59.156	0					12	6	3	0	0	0	0.026674	1	5044	5044		56.434	0	1	880390			38892	3674	32100	32123	42210	42210					-0.01754545707831312
MTLEAAQGLL	10	Oxidation (M)	_M(Oxidation (M))TLEAAQGLL_		M(1)TLEAAQGLL		M(66)TLEAAQGLL	0	0	1		ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MULTI-MSMS	OvCa99_classI_Rep5	1	531.778564453125	2	531.778625	1061.5427	-0.99442	-0.00052881	-2.3766	-0.0012638	-3.371	-0.0017926	531.7771092664374	65.689	0.58805	65.689	65.507	66.096	0					31	14	3	0	0	0	0.41408	1	6037	6037		66.429	7.6473	1	5245700			38893	9059	32101	32124	42211	42211		272			0.014386596431222642
MTLILIFLA	9	Unmodified	_MTLILIFLA_					0	0	0			REV__nc|ENSG00000132128|Q15345-3|LRRC41	REV__nc|ENSG00000132128|Q15345-3|LRRC41	MULTI-MSMS	OvCa99_classI_Rep5	1	517.8206787109375	2	517.819564	1033.62458	0.65328	0.00033828	-0.30414	-0.00015749	0.34913	0.00018079	517.8192290042126	150.79	1.1612	150.79	150.44	151.6	0					68	22	4	0	0	0	0.59983	1	17684	17684		31.955	0	1	403000	+		38894	19053	32102	32125	42212	42212					0.10910806792867334
MTLLAFHLS	9	Unmodified	_MTLLAFHLS_					0	0	0		ENST00000448464.6_1_8:95953287-95961571:-|nuORF	ENST00000448464.6_1_8:95953287-95961571:-|nuORF	ENST00000448464.6_1_8:95953287-95961571:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.80517578125	2	516.78097	1031.54739	-1.2369	-0.0006392	-1.8927	-0.00097813	-3.1296	-0.0016173	516.7799664781248	55.174	0.81576	51.927	51.695	52.511	-3.2474					23	15	2	0	0	0	0.027462	1	3453	3453		30.504	7.4612	1	127060			38895	12020	32103	32126	42213	42213					0.032875885765406565
MTLLAFHLS	9	Unmodified	_MTLLAFHLS_					0	0	0		ENST00000448464.6_1_8:95953287-95961571:-|nuORF	ENST00000448464.6_1_8:95953287-95961571:-|nuORF	ENST00000448464.6_1_8:95953287-95961571:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	516.78097	1031.54739	-0.90095	-0.0004656	-3.3806	-0.001747	-4.2816	-0.0022126	516.7789606478166	54.736	0.84918	51.922	51.673	52.522	-2.8139	-0.0023225	-0.0010957	NaN	30.504	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36906			38896	12020	32103	32126							0.032875885765406565
MTLLASLGNF	10	Unmodified	_MTLLASLGNF_					0	0	0			REV__tr|A0A553STP9|A0A553STP9_NIACINickelpincercofactorbiosynthesisproteinLarBOS=NialliacirculansOX=1397GN=larBPE=4SV=1	REV__tr|A0A553STP9|A0A553STP9_NIACINickelpincercofactorbiosynthesisproteinLarBOS=NialliacirculansOX=1397GN=larBPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.793212890625	2	533.78371	1065.55287	0.84538	0.00045125	-3.4009	-0.0018154	-2.5555	-0.0013641	533.7815198653528	151.45	0.53986	151.45	151.25	151.79	0					15	10	2	0	0	0	0.026624	1	17714	17714		38.754	3.1353	1	49298	+		38897	30993	32104	32127	42214	42214					0.022712673683372486
MTLPILHAF	9	Unmodified	_MTLPILHAF_					0	0	0			REV__ENST00000508784.5_1_4:146681933-146682710:-|nuORF	REV__ENST00000508784.5_1_4:146681933-146682710:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	521.7937622070312	2	521.791338	1041.56812	-6.3238	-0.0032997	2.6203	0.0013673	-3.7034	-0.0019324	521.7928197803336	157.74	0.67743	156.57	156.31	156.98	-1.1707					34	21	2	0	0	0	0.6653	1	13611	13611		24.203	2.2429	1	15742	+		38898	26917	32105	32128	42215	42215					0.04900178956199852
MTLRMTLRN	9	Unmodified	_MTLRMTLRN_					0	0	0		ENST00000476149.1_1_2:118583128-118583884:+|nuORF	ENST00000476149.1_1_2:118583128-118583884:+|nuORF	ENST00000476149.1_1_2:118583128-118583884:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	568.3078002929688	2	568.307361	1134.60017	0.18699	0.00010627	1.3634	0.00077481	1.5504	0.00088108	568.3083887469526	107.06	1.5103	105.8	105.06	106.57	-1.267					48	23	3	0	0	0	0.61365	1	7592	7592		30.318	1.1477	1	238690			38899	12461	32106	32129	42216	42216					0.03825223367698527
MTLVEAIQT	9	Unmodified	_MTLVEAIQT_					0	0	0		nc|ENSG00000293542|Q9UII6|DUSP13B;nc|ENSG00000293542|Q9UII6-4|DUSP13B;ENSG00000079393|ENST00000478873|DUSP13	nc|ENSG00000293542|Q9UII6|DUSP13B	nc|ENSG00000293542|Q9UII6|DUSP13B	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.7825622558594	2	503.267893	1004.52123	0.55116	0.00027738	-1.6104	-0.00081044	-1.0592	-0.00053306	503.26651081329726	74.361	0.26379	74.361	74.214	74.478	0					10	6	2	0	0	0	0.027447	1	7362	7362		31.53	0	1	301930			38900	1615	32107	32130	42217	42217					0.019152746143845434
MTLVLLSGIV	10	Unmodified	_MTLVLLSGIV_					0	0	0			REV__ENSG00000001561|ENST00000321037|ENPP4	REV__ENSG00000001561|ENST00000321037|ENPP4	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.3226928710938	2	523.319928	1044.6253	3.2837	0.0017184	3.5635	0.0018649	6.8472	0.0035833	523.3216227934925	132.7	1.7146	131.2	130.95	132.66	-1.5015					74	34	3	0	0	0	0.46756	1	12794	12794		58.782	10.866	1	157630	+		38901	16361	32108	32131	42218	42218					0.10477601441903062
MTMYCQVVK	9	Unmodified	_MTMYCQVVK_					0	0	0		ENST00000464987.5_1_11:865621-866627:+|nuORF;ENSG00000214063|ENST00000397397|TSPAN4;ENST00000468468.5_1_11:864058-866627:+|nuORF	ENST00000464987.5_1_11:865621-866627:+|nuORF	ENST00000464987.5_1_11:865621-866627:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.328125	2	551.758323	1101.50209	2.0915	0.001154	0.81173	0.00044788	2.9032	0.0016019	551.7586325523923	122.04	0.51447	122.04	121.66	122.17	0					16	10	2	0	0	0	0.027426	1	14059	14059		47.657	17.154	1	29098			38902	9162	32109	32132	42219	42219					-0.04459721272519346
MTNESNGVEE	10	Unmodified	_MTNESNGVEE_					0	0	0		tr|A0A7D6ZX94|A0A7D6ZX94_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12455PE=4SV=1	tr|A0A7D6ZX94|A0A7D6ZX94_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12455PE=4SV=1	tr|A0A7D6ZX94|A0A7D6ZX94_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12455PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	554.3231201171875	2	555.22441	1108.43427	-0.59099	-0.00032813	3.5981	0.0019978	3.0071	0.0016696	555.2263860282371	51.098	0.59612	48.304	48.024	48.62	-2.794					16	11	2	0	0	0	0.026653	1	3305	3305		49.536	3.5638	1	12936			38903	35868	32110	32133	42220	42220					-0.11561176397958661
MTNFIMKAF	9	Unmodified	_MTNFIMKAF_					0	0	0		nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7;ENSG00000134744|ENST00000257177|TUT4;nc|ENSG00000134744|Q5TAX3|TUT4	nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000134744|ENST00000257177|TUT4	nc|ENSG00000083223|Q5VYS8-6|TUT7	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.3386840820312	2	551.774831	1101.53511	2.2004	0.0012141	-1.8949	-0.0010456	0.30544	0.00016853	551.7746485668167	84.199	0.46347	84.199	84.009	84.472	0					17	10	2	0	0	0	0.02744	1	8820	8820		71.877	31.099	1	252670			38904	1689;4322	32111	32134	42221	42221					-0.01159771158154399
MTNQLAQL	8	Unmodified	_MTNQLAQL_					0	0	0			REV__tr|A0A553SF47|A0A553SF47_NIACIBCCTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_08240PE=3SV=1	REV__tr|A0A553SF47|A0A553SF47_NIACIBCCTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_08240PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	460.2547302246094	2	459.739302	917.464052	2.0682	0.00095083	-2.8046	-0.0012894	-0.73646	-0.00033858	459.7379376293473	78.194	0.45061	78.194	77.924	78.374	0					13	10	2	0	0	0	0.028476	1	7931	7931		68.787	28.009	1	86957	+		38905	29536	32112	32135	42222	42222					0.0020185212866863367
MTPFMVTSAI	10	Unmodified	_MTPFMVTSAI_					0	0	0			REV__tr|A0A7D6ZHM1|A0A7D6ZHM1_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_03485PE=4SV=1	REV__tr|A0A7D6ZHM1|A0A7D6ZHM1_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_03485PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7583618164062	2	549.272121	1096.52969	1.7203	0.00094491	2.3369	0.0012836	4.0572	0.0022285	549.2729174293358	129.02	0.46652	129.02	128.79	129.26	0					13	9	2	0	0	0	0.026891	1	14948	14948		24.519	0	1	55148	+		38906	32030	32113	32136	42223	42223					-0.014714947406218926
MTPHNIIK	8	Unmodified	_MTPHNIIK_					0	0	0			REV__FOXM1|p.S414Lfs*4|1|0.05|ENSG00000111206|chr12:2864347-2864348|-/GCCTCCCAAG|frameshift_variant	REV__FOXM1|p.S414Lfs*4|1|0.05|ENSG00000111206|chr12:2864347-2864348|-/GCCTCCCAAG|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	477.2659606933594	2	477.265487	952.516422	1.2105	0.00057774	1.2943	0.00061772	2.5048	0.0011955	477.26598420208353	123.65	0.58991	123.65	123.42	124.01	0					27	12	3	0	0	0	0.57734	1	14260	14260		68.787	7.8149	1	316380	+		38907	15876	32114	32137	42224	42224					0.03826435262317318
MTPHNIIK	8	Unmodified	_MTPHNIIK_					0	0	0			REV__FOXM1|p.S414Lfs*4|1|0.05|ENSG00000111206|chr12:2864347-2864348|-/GCCTCCCAAG|frameshift_variant	REV__FOXM1|p.S414Lfs*4|1|0.05|ENSG00000111206|chr12:2864347-2864348|-/GCCTCCCAAG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	477.26568603515625	2	477.265487	952.516422	0.3158	0.00015072	0.21401	0.00010214	0.52982	0.00025286	477.26556342485156	124.97	1.2358	124.74	124.37	125.6	-0.2359					42	24	2	0	0	0	0.57734	1	12173	12173		68.787	0.30212	1	116290	+		38908	15876	32114	32137	42225	42225					0.03826435262317318
MTPHNIIK	8	Unmodified	_MTPHNIIK_					0	0	0			REV__FOXM1|p.S414Lfs*4|1|0.05|ENSG00000111206|chr12:2864347-2864348|-/GCCTCCCAAG|frameshift_variant	REV__FOXM1|p.S414Lfs*4|1|0.05|ENSG00000111206|chr12:2864347-2864348|-/GCCTCCCAAG|frameshift_variant	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	477.265487	952.516422	1.2105	0.00057774	1.2943	0.00061772	2.5048	0.0011955	477.26598420208353	123.65	0.58991	123.65	123.42	124.01	0	0	0	NaN	68.787	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	316380	+		38909	15876	32114	32137							0.03826435262317318
MTPRSPSLV	9	Unmodified	_MTPRSPSLV_					0	0	0			REV__ENST00000572418.1_1_17:3807220-3819678:-|nuORF	REV__ENST00000572418.1_1_17:3807220-3819678:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	494.2876281738281	2	494.268227	986.521901	-1.2511	-0.00061838	-0.35523	-0.00017558	-1.6063	-0.00079396	494.2684384832753	84.211	1.124	81.95	81.434	82.558	-2.261					35	23	2	0	0	0	0.027185	1	4865	4865		93.195	7.836	1	34820	+		38910	27753	32115	32138	42226	42226					0.028101140541025416
MTPTSHIGNQN	11	Unmodified	_MTPTSHIGNQN_					0	0	0		ENST00000446760.2_1:146412138-146412798:+|nuORF	ENST00000446760.2_1:146412138-146412798:+|nuORF	ENST00000446760.2_1:146412138-146412798:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	600.2711181640625	2	600.277312	1198.54007	-5.4228	-0.0032552	-3.5026	-0.0021025	-8.9254	-0.0053577	600.2750319043287	159.18	1.1999	158.96	158.63	159.83	-0.22697					79	23	5	0	0	0	0.69455	1	16173	16173		31.53	5.9558	1	203880			38911	11997	32116	32139	42227	42227					-0.05125795761819063
MTQADEPTE	9	Unmodified	_MTQADEPTE_					0	0	0			REV__ENSG00000168014|ENST00000334126|C2CD3	REV__ENSG00000168014|ENST00000334126|C2CD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.2850036621094	2	511.210772	1020.40699	2.1961	0.0011226	-2.366	-0.0012095	-0.1699	-8.6856E-05	511.2093650457664	93.887	0.50428	93.887	93.632	94.136	0					22	11	3	0	0	0	0.027425	1	10176	10176		35.152	0	1	902770	+		38912	21334	32117	32140	42228	42228					-0.10239659938361001
MTQHLAHSK	9	Unmodified	_MTQHLAHSK_					0	0	0		ENST00000480282.5_2_3:111847241-111847490:+|nuORF	ENST00000480282.5_2_3:111847241-111847490:+|nuORF	ENST00000480282.5_2_3:111847241-111847490:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.3234252929688	2	526.768926	1051.5233	1.5257	0.00080368	-0.10808	-5.6932E-05	1.4176	0.00074675	526.7698385091221	129.61	0.2281	129.61	129.4	129.63	0					5	4	2	0	0	0	0.027462	1	15025	15025		35.152	5.982	1	25917			38913	12520	32118	32141	42229	42229					-0.0004025185712634993
MTQMSKYAMPS	11	Unmodified	_MTQMSKYAMPS_					0	0	0		nc|ENSG00000186174|Q86UU0-3|BCL9L;nc|ENSG00000186174|Q86UU0-4|BCL9L;nc|ENSG00000186174|Q86UU0-2|BCL9L;ENSG00000186174|ENST00000683865|BCL9L	nc|ENSG00000186174|Q86UU0-3|BCL9L	nc|ENSG00000186174|Q86UU0-3|BCL9L	MULTI-MSMS	OvCa99_classI_Rep5	1	637.7852172851562	2	637.782527	1273.5505	1.048	0.00066838	1.8238	0.0011632	2.8717	0.0018315	637.7835771117301	141.66	1.8026	141.66	141.03	142.83	0					79	35	3	0	0	0	0.66495	1	16563	16563		38.754	1.2454	1	899210			38914	8320	32119	32142	42230	42230					-0.07533272423279413
MTRLRFDLV	9	Unmodified	_MTRLRFDLV_					0	0	0		tr|A0A553SLN3|A0A553SLN3_NIACIPTSsugartransporterOS=NialliacirculansOX=1397GN=CEQ21_20990PE=4SV=1	tr|A0A553SLN3|A0A553SLN3_NIACIPTSsugartransporterOS=NialliacirculansOX=1397GN=CEQ21_20990PE=4SV=1	tr|A0A553SLN3|A0A553SLN3_NIACIPTSsugartransporterOS=NialliacirculansOX=1397GN=CEQ21_20990PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.2992553710938	2	575.823701	1149.63285	-0.94603	-0.00054475	-2.8307	-0.00163	-3.7767	-0.0021747	576.324351626346	98.591	0.20758	96.872	96.715	96.922	-1.7192					5	3	2	0	0	0	0.027358	1	6587	6587		75.043	0.78827	1	9105.4			38915	33744	32120	32143	42231	42231					0.06401753762179396
MTRLRFDLV	9	Unmodified	_MTRLRFDLV_					0	0	0		tr|A0A553SLN3|A0A553SLN3_NIACIPTSsugartransporterOS=NialliacirculansOX=1397GN=CEQ21_20990PE=4SV=1	tr|A0A553SLN3|A0A553SLN3_NIACIPTSsugartransporterOS=NialliacirculansOX=1397GN=CEQ21_20990PE=4SV=1	tr|A0A553SLN3|A0A553SLN3_NIACIPTSsugartransporterOS=NialliacirculansOX=1397GN=CEQ21_20990PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	575.823701	1149.63285	1.9919	0.001147	-0.65543	-0.00037741	1.3365	0.00076957	575.8224634985642	96.648	0.16756	96.648	96.543	96.71	0	-0.11232	0.0014242	NaN	75.043	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31396			38916	33744	32120	32143							0.06401753762179396
MTRLSFQKL	9	Oxidation (M)	_M(Oxidation (M))TRLSFQKL_		M(1)TRLSFQKL		M(88)TRLSFQKL	0	0	1			REV__tr|A0A553SG30|A0A553SG30_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_10000PE=4SV=1	REV__tr|A0A553SG30|A0A553SG30_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_10000PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	570.3135986328125	2	570.315709	1138.61686	-1.1735	-0.00066925	-1.9761	-0.001127	-3.1495	-0.0017962	570.3143754994007	119.79	1.3582	118.44	118.14	119.5	-1.3444					67	25	4	0	0	0	0.13326	1	11259	11259		88.177	15.298	1	393950	+		38917	29654	32121	32144	42232	42232		650			0.05310047525290429
MTRSKCPGRN	10	Unmodified	_MTRSKCPGRN_					0	0	0			REV__DNMT1|p.D701Tfs*87|1|0.11|ENSG00000130816|chr19:10151514-10151515|-/CTTGACTTGCATGGTCCTCTGTTACTTAAAGT|frameshift_variant	REV__DNMT1|p.D701Tfs*87|1|0.11|ENSG00000130816|chr19:10151514-10151515|-/CTTGACTTGCATGGTCCTCTGTTACTTAAAGT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	575.2855834960938	2	575.284417	1148.55428	1.07	0.00061558	-1.7796	-0.0010238	-0.70956	-0.0004082	575.2830526874005	146.3	1.8139	146.3	145.93	147.74	0					95	36	4	0	0	0	0.43433	1	17187	17187		63.534	1.4264	1	1068300	+		38918	16324	32123	32145	42233	42233					-0.014054218145474806
MTSIRQFV	8	Unmodified	_MTSIRQFV_					0	0	0		ENSG00000169084|ENST00000334651|DHRSX	ENSG00000169084|ENST00000334651|DHRSX	ENSG00000169084|ENST00000334651|DHRSX	MULTI-MSMS	OvCa99_classI_Rep5	1	491.2611389160156	2	491.262945	980.511337	2.1969	0.0010793	-0.39547	-0.00019428	1.8015	0.00088499	491.2626814304307	84.575	1.2836	84.575	84.051	85.334	0					62	30	3	0	0	0	0.60331	1	8846	8846		63.306	6.5852	1	1011900			38919	6974	32124	32146	42234	42234					0.020301313996810677
MTSKLLSDLC	10	Unmodified	_MTSKLLSDLC_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4;ENST00000489049.5_1_10:112647518-112650449:+|nuORF;ENST00000462577.5_1_10:112645037-112653861:+|nuORF	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	OvCa9_classI_Rep2	2	555.7800903320312	2	555.78031	1109.54607	-1.1588	-0.00064404	1.8821	0.001046	0.7233	0.000402	555.781230200271	62.553	1.6061	59.805	59.445	61.051	-2.748					65	30	4	0	0	0	0.69073	1	4705	4705		31.53	2.3803	1	186800			38920	5511	32125	32147	42235	42235					-0.004324135745264357
MTSLIIMMS	9	2 Oxidation (M)	_M(Oxidation (M))TSLIIM(Oxidation (M))MS_		M(1)TSLIIM(0.982)M(0.018)S		M(56)TSLIIM(17)M(-17)S	0	0	2			REV__tr|A0A553SPW6|A0A553SPW6_NIACILincomycineffluxMFStransporterLmr(B)OS=NialliacirculansOX=1397GN=lmr(B)PE=4SV=1	REV__tr|A0A553SPW6|A0A553SPW6_NIACILincomycineffluxMFStransporterLmr(B)OS=NialliacirculansOX=1397GN=lmr(B)PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.7528686523438	2	529.750164	1057.48577	2.259	0.0011967	1.5609	0.00082689	3.8199	0.0020236	529.7508249770774	98.719	1.4871	98.719	98.165	99.652	0					101	35	4	0	0	0	0.29717	1	10847	10847		63.306	7.8021	3	10333000	+		38921	30580	32126	32148	42236	42236		675;676			-0.04066847229250925
MTSSRSLLIY	10	Unmodified	_MTSSRSLLIY_					0	0	0			REV__ENST00000296755.11_1_5:71502751-71502793:+|nuORF	REV__ENST00000296755.11_1_5:71502751-71502793:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	585.8145751953125	2	585.812999	1169.61144	0.94263	0.0005522	1.6052	0.00094032	2.5478	0.0014925	585.8138244748638	155.41	1.0628	155.41	154.98	156.04	0					46	20	3	0	0	0	0.53885	1	18217	18217		49.442	1.7842	1	302930	+		38922	24207	32127	32149	42237	42237					0.03342323942842995
MTTEDTDLV	9	Unmodified	_MTTEDTDLV_					0	0	0			REV__tr|A0A7D6VTD0|A0A7D6VTD0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08415PE=4SV=1	REV__tr|A0A7D6VTD0|A0A7D6VTD0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08415PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.2628784179688	2	512.728797	1023.44304	-0.36106	-0.00018513	3.4924	0.0017907	3.1313	0.0016055	513.2325590307985	116.79	0.63046	115.43	115.3	115.93	-1.3645					15	11	2	0	0	0	0.027462	1	10895	10895		30.504	13.139	1	16484	+		38923	31595	32128	32150	42238	42238					-0.06774202761494053
MTTNKLPK	8	Unmodified	_MTTNKLPK_					0	0	0		tr|A0A7D6VRF3|A0A7D6VRF3_9CLOTSF3helicasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19285PE=4SV=1	tr|A0A7D6VRF3|A0A7D6VRF3_9CLOTSF3helicasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19285PE=4SV=1	tr|A0A7D6VRF3|A0A7D6VRF3_9CLOTSF3helicasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19285PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	467.765625	2	466.76532	931.516088	-0.86633	-0.00040437	0.7705	0.00035964	-0.095834	-4.4732E-05	466.76552764378283	99.782	1.1753	97.456	97.16	98.335	-2.3253					37	22	2	0	0	0	0.028476	1	8902	8902		45.952	0	1	56599			38924	34925	32129	32151	42239	42239					0.04759015542435918
MTTNKLPK	8	Unmodified	_MTTNKLPK_					0	0	0		tr|A0A7D6VRF3|A0A7D6VRF3_9CLOTSF3helicasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19285PE=4SV=1	tr|A0A7D6VRF3|A0A7D6VRF3_9CLOTSF3helicasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19285PE=4SV=1	tr|A0A7D6VRF3|A0A7D6VRF3_9CLOTSF3helicasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19285PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	466.76532	931.516088	-0.48762	-0.0002276	0.17194	8.0257E-05	-0.31568	-0.00014735	466.76512455251026	98.461	0.94145	97.568	97.264	98.206	-0.89306	0.043219	-0.00024862	NaN	40.778	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58014			38925	34925	32129	32151							0.04759015542435918
MTTNKLPK	8	Unmodified	_MTTNKLPK_					0	0	0		tr|A0A7D6VRF3|A0A7D6VRF3_9CLOTSF3helicasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19285PE=4SV=1	tr|A0A7D6VRF3|A0A7D6VRF3_9CLOTSF3helicasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19285PE=4SV=1	tr|A0A7D6VRF3|A0A7D6VRF3_9CLOTSF3helicasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19285PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	466.76532	931.516088	-0.22048	-0.00010291	0.28177	0.00013152	0.061295	2.861E-05	466.7652626403257	99.234	0.97865	97.549	97.27	98.248	-1.685	0.024806	-0.00014609	NaN	40.778	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61656			38926	34925	32129	32151							0.04759015542435918
MTTPLKKLKKS	11	Unmodified	_MTTPLKKLKKS_					0	0	0		nc|ENSG00000241721|G2XKQ0|SUMO1P1	nc|ENSG00000241721|G2XKQ0|SUMO1P1	nc|ENSG00000241721|G2XKQ0|SUMO1P1	MULTI-SECPEP	OvCa99_classI_Rep5	1	425.7484130859375	3	425.600336	1273.77918	-0.23725	-0.00010097	3.4502	0.0014684	3.2129	0.0013674	425.6032268835936	38.595	0.26538	38.595	38.44	38.705	0					6	5	2	0	0	0	0.02625	1	2185	2185		24.232	11.274	1	44277			38927	15340	32130	32152	42240	42240					0.15324011207417243
MTVERTVRE	9	Unmodified	_MTVERTVRE_					0	0	0		ENST00000012049.9_1_19:46206319-46206388:+|nuORF	ENST00000012049.9_1_19:46206319-46206388:+|nuORF	ENST00000012049.9_1_19:46206319-46206388:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	560.7899169921875	2	560.792598	1119.57064	0.076238	4.2753E-05	-3.3831	-0.0018972	-3.3069	-0.0018545	560.7906951341574	64.273	2.9179	61.548	60.968	63.886	-2.7245					181	56	6	0	0	0	0.34132	1	4894	4894		58.23	3.5076	1	2758800			38928	9627	32131	32153	42241	42241					0.01563982623224547
MTVERTVRE	9	Unmodified	_MTVERTVRE_					0	0	0		ENST00000012049.9_1_19:46206319-46206388:+|nuORF	ENST00000012049.9_1_19:46206319-46206388:+|nuORF	ENST00000012049.9_1_19:46206319-46206388:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.7918701171875	2	560.792598	1119.57064	0.99026	0.00055533	-4.2732	-0.0023964	-3.2829	-0.001841	560.7902547795154	65.061	2.6294	61.576	61.114	63.744	-3.4854					165	53	6	0	0	0	0.17606	2	4711	4651;4711		80.455	16.445	1	6333200			38929	9627	32131	32153	42242;42243	42243					0.01563982623224547
MTVERTVRE	9	Unmodified	_MTVERTVRE_					0	0	0		ENST00000012049.9_1_19:46206319-46206388:+|nuORF	ENST00000012049.9_1_19:46206319-46206388:+|nuORF	ENST00000012049.9_1_19:46206319-46206388:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	560.792598	1119.57064	0.92434	0.00051836	-4.0447	-0.0022682	-3.1204	-0.0017499	560.7901023262723	64.88	1.1118	61.886	61.344	62.456	-2.9933	0.21606	-0.00025975	NaN	80.455	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23276			38930	9627	32131	32153							0.01563982623224547
MTVILKMED	9	Unmodified	_MTVILKMED_					0	0	0		ENST00000556551.2_1_14:74360612-74361982:+|nuORF	ENST00000556551.2_1_14:74360612-74361982:+|nuORF	ENST00000556551.2_1_14:74360612-74361982:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.3080444335938	2	540.277403	1078.54025	1.9474	0.0010521	2.1541	0.0011638	4.1014	0.0022159	540.2786362271814	130.43	1.181	128.95	128.41	129.59	-1.4779					38	23	3	0	0	0	0.027462	1	12542	12542		31.53	0	1	43712			38931	13664	32132	32154	42244	42244					0.0041248791380894545
MTVKKDIEL	9	Oxidation (M)	_M(Oxidation (M))TVKKDIEL_		M(1)TVKKDIEL		M(96)TVKKDIEL	0	0	1		ENSG00000169126|ENST00000305242|ODAD2	ENSG00000169126|ENST00000305242|ODAD2	ENSG00000169126|ENST00000305242|ODAD2	MULTI-MSMS	OvCa9_classI_Rep3	3	546.798583984375	2	546.8021	1091.58965	0.80369	0.00043946	-4.463	-0.0024404	-3.6593	-0.0020009	546.7995986373286	121.01	1.9317	119.99	119.71	121.64	-1.0271					88	36	3	0	0	0	0.10363	2	9314	9314;9320		96.19	8.0135	1	1681800			38932	6978	32133	32155	42245;42246	42245		213			0.04751519194246612
MTVLRSIR	8	Unmodified	_MTVLRSIR_					0	0	0		tr|A0A553SUD0|A0A553SUD0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06780PE=4SV=1	tr|A0A553SUD0|A0A553SUD0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06780PE=4SV=1	tr|A0A553SUD0|A0A553SUD0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06780PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.26483154296875	2	488.292037	974.56952	1.6705	0.00081569	-2.5006	-0.001221	-0.8301	-0.00040533	488.29073078855515	87.618	0.16528	87.618	87.505	87.671	0					5	3	2	0	0	0	0.028476	1	9281	9281		42.396	3.59	1	92506			38933	34594	32134	32156	42247	42247					0.08121813044954251
MTVSTIIDK	9	Unmodified	_MTVSTIIDK_					0	0	0		ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	MULTI-MSMS	OvCa99_classI_Rep5	1	504.2771911621094	2	504.275718	1006.53688	1.5454	0.0007793	-0.12819	-6.4643E-05	1.4172	0.00071466	504.2758041729241	90.737	0.63686	90.737	90.421	91.057	0					29	15	3	0	0	0	0.1804	1	9738	9738		79.713	4.6693	1	1488900			38934	4764	32135	32157	42248	42248					0.033875611314670095
MTVSYTSLAP	10	Unmodified	_MTVSYTSLAP_					0	0	0		ENST00000536743.5_1_2:11245472-11245784:-|nuORF	ENST00000536743.5_1_2:11245472-11245784:-|nuORF	ENST00000536743.5_1_2:11245472-11245784:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.2796630859375	2	535.26535	1068.51615	-1.7383	-0.00093044	2.0133	0.0010777	0.27504	0.00014722	535.2662745617986	127.55	0.71602	126.11	125.94	126.66	-1.4357					19	13	2	0	0	0	0.026915	1	12230	12230		35.618	8.8222	1	22279			38935	13394	32136	32158	42249	42249					-0.015370292482430159
MTVSYTSLAP	10	Unmodified	_MTVSYTSLAP_					0	0	0		ENST00000536743.5_1_2:11245472-11245784:-|nuORF	ENST00000536743.5_1_2:11245472-11245784:-|nuORF	ENST00000536743.5_1_2:11245472-11245784:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	535.26535	1068.51615	2.0337	0.0010886	-0.84192	-0.00045065	1.1918	0.00063792	535.2649733407837	127.27	0.62292	126.2	125.86	126.48	-1.0715	0.041547	-0.0013565	NaN	35.618	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25829			38936	13394	32136	32158							-0.015370292482430159
MTVTGKTLGEN	11	Unmodified	_MTVTGKTLGEN_					0	0	0		tr|A0A7D6VN02|A0A7D6VN02_9CLOTDihydroxy-aciddehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_15615PE=3SV=1	tr|A0A7D6VN02|A0A7D6VN02_9CLOTDihydroxy-aciddehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_15615PE=3SV=1	tr|A0A7D6VN02|A0A7D6VN02_9CLOTDihydroxy-aciddehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_15615PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.3472900390625	2	575.792263	1149.56997	0.30749	0.00017705	0.60383	0.00034768	0.91133	0.00052474	575.7916687761953	161.11	0.60284	161.11	160.56	161.16	0					15	11	2	0	0	0	0.025767	1	18831	18831		18.531	8.2658	1	20233			38937	34673	32137	32159	42250	42250					0.0011714318352460396
MTVYHQLE	8	Unmodified	_MTVYHQLE_					0	0	0			REV__ENSG00000198793|ENST00000361445|MTOR	REV__ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	OvCa9_classI_Rep3	3	509.80401611328125	2	510.744585	1019.47462	1.8145	0.00092676	0.14048	7.1747E-05	1.955	0.00099851	510.74465231149946	112.14	0.64026	111.03	110.8	111.44	-1.1038					18	12	2	0	0	0	0.028476	1	8225	8225		23.042	0	1	10143	+		38938	23062	32138	32160	42251	42251					-0.03434165216879137
MTVYLNFFFLP	11	Unmodified	_MTVYLNFFFLP_					0	0	0			REV__chr1:1839238-1846086|141|22.25|0.43|5.71|-|2|TE_info:L1MC4,L1MC4_dup18,L1,LINE,donor,+,1846086,1846279|GNB1,None|1	REV__chr1:1839238-1846086|141|22.25|0.43|5.71|-|2|TE_info:L1MC4,L1MC4_dup18,L1,LINE,donor,+,1846086,1846279|GNB1,None|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.7591247558594	3	464.573787	1390.69953	-2.432	-0.0011298	4.1027	0.001906	1.6707	0.00077618	464.57566469511914	49.591	0.67149	46.45	46.251	46.922	-3.1416					20	12	2	0	0	0	0.025714	1	2819	2819		25.126	11.618	1	61747	+		38939	15809	32139	32161	42252	42252					0.0198094453342037
MTVYLNFFFLP	11	Unmodified	_MTVYLNFFFLP_					0	0	0			REV__chr1:1839238-1846086|141|22.25|0.43|5.71|-|2|TE_info:L1MC4,L1MC4_dup18,L1,LINE,donor,+,1846086,1846279|GNB1,None|1	REV__chr1:1839238-1846086|141|22.25|0.43|5.71|-|2|TE_info:L1MC4,L1MC4_dup18,L1,LINE,donor,+,1846086,1846279|GNB1,None|1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	464.573787	1390.69953	-0.9812	-0.00045584	3.2375	0.0015041	2.2563	0.0010482	464.5751997404749	49.192	0.69135	46.432	46.078	46.769	-2.7603	-0.0091351	-0.00070141	NaN	25.126	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19043	+		38940	15809	32139	32161							0.0198094453342037
MTWSPLILR	9	Unmodified	_MTWSPLILR_					0	0	0			REV__ENST00000496738.5_1_1:156104620-156106879:+|nuORF	REV__ENST00000496738.5_1_1:156104620-156106879:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.8345336914062	2	558.815344	1115.61614	-0.4851	-0.00027108	-3.2926	-0.00184	-3.7777	-0.002111	558.8132455699357	70.234	0.40349	70.234	70.005	70.408	0					22	9	3	0	0	0	0.027402	1	6724	6724		56.721	18.91	1	919110	+		38941	26767	32140	32162	42253	42253					0.06295252876248014
MTYLKNNPPIN	11	Unmodified	_MTYLKNNPPIN_					0	0	0		tr|A0A553SN14|A0A553SN14_NIACIUPF0154proteinCEQ21_23640OS=NialliacirculansOX=1397GN=CEQ21_23640PE=3SV=1	tr|A0A553SN14|A0A553SN14_NIACIUPF0154proteinCEQ21_23640OS=NialliacirculansOX=1397GN=CEQ21_23640PE=3SV=1	tr|A0A553SN14|A0A553SN14_NIACIUPF0154proteinCEQ21_23640OS=NialliacirculansOX=1397GN=CEQ21_23640PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.7809753417969	3	435.560429	1303.65946	0.3547	0.00015449	1.5692	0.0006835	1.9239	0.00083799	435.56106391044403	58.092	0.5528	54.747	54.546	55.098	-3.3449					13	10	2	0	0	0	0.026113	1	3784	3784		9.2118	2.1931	1	22280			38942	33894	32141	32163	42254	42254					0.019773978628791156
MTYLVEPLFT	10	Unmodified	_MTYLVEPLFT_					0	0	0		ENSG00000205268|ENST00000401827|PDE7A;nc|ENSG00000205268|Q13946-2|PDE7A	ENSG00000205268|ENST00000401827|PDE7A	ENSG00000205268|ENST00000401827|PDE7A	MULTI-MSMS	OvCa9_classI_Rep3	3	607.314453125	2	607.3123	1212.61005	2.0773	0.0012616	0.59039	0.00035855	2.6677	0.0016201	607.3125547207642	106.87	1.4593	105.6	105.22	106.68	-1.267					86	28	4	0	0	0	0.33376	1	7554	7554		76.774	0.60445	1	1736200			38943	9060	32142	32164	42255	42255					0.012246898540752227
MTYVAGLMIA	10	Unmodified	_MTYVAGLMIA_					0	0	0			REV__ENSG00000131097|ENST00000253410|HIGD1B	REV__ENSG00000131097|ENST00000253410|HIGD1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.2981567382812	2	535.274664	1068.53477	0.94792	0.0005074	3.5208	0.0018846	4.4687	0.002392	535.7772836598763	131.77	0.46277	131.77	131.53	131.99	0					13	9	2	0	0	0	0.026822	1	15327	15327		23.042	0	1	35557	+		38944	18998	32143	32165	42256	42256					0.0032480912200298917
MTYWHLLNAP	10	Unmodified	_MTYWHLLNAP_					0	0	0		nc|ENSG00000120217|Q9NZQ7-2|CD274	nc|ENSG00000120217|Q9NZQ7-2|CD274	nc|ENSG00000120217|Q9NZQ7-2|CD274	MULTI-SECPEP	OvCa99_classI_Rep5	1	622.3413696289062	2	623.307884	1244.60121	1.6787	0.0010463	-2.0242	-0.0012617	-0.34551	-0.00021536	623.3064371705832	117.28	1.7626	117.28	116.82	118.58	0					54	37	3	0	0	0	0.026635	1	13491	13491		47.657	0	1	166540			38945	14987	32144	32166	42257	42257					-0.011302389917091205
MVAAGLVLIN	10	Unmodified	_MVAAGLVLIN_					0	0	0			REV__nc|ENSG00000073060|Q8WTV0-4|SCARB1	REV__nc|ENSG00000073060|Q8WTV0-4|SCARB1	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.3041687011719	2	500.79662	999.578688	-0.6127	-0.00030684	0.12417	6.2183E-05	-0.48853	-0.00024465	500.7932053589747	95.458	1.1384	94.43	93.775	94.913	-1.0281					46	22	3	0	0	0	0.026552	1	8587	8587		63.306	11.971	1	26437	+		38946	16930	32145	32167	42258	42258					0.07888161610640054
MVAIRKAID	9	Unmodified	_MVAIRKAID_					0	0	0			REV__tr|A0A553SP30|A0A553SP30_NIACIFlagellarmotorswitchproteinFliGOS=NialliacirculansOX=1397GN=fliGPE=3SV=1	REV__tr|A0A553SP30|A0A553SP30_NIACIFlagellarmotorswitchproteinFliGOS=NialliacirculansOX=1397GN=fliGPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	508.7972717285156	2	508.799694	1015.58484	-0.073799	-3.7549E-05	-3.3685	-0.0017139	-3.4423	-0.0017514	508.79781426148145	110.04	1.2366	109.86	109.56	110.8	-0.17236					63	24	4	0	0	0	0.44568	1	10375	10375		47.657	0	1	341650	+		38947	30483	32146	32168	42259	42259					0.07766679842154645
MVANLSRGP	9	Unmodified	_MVANLSRGP_					0	0	0		ENSG00000204147|ENST00000647317|ASAH2B	ENSG00000204147|ENST00000647317|ASAH2B	ENSG00000204147|ENST00000647317|ASAH2B	MULTI-MSMS	OvCa9_classI_Rep2	2	472.7513427734375	2	472.752744	943.490935	-0.97149	-0.00045927	1.4188	0.00067072	0.44726	0.00021145	472.7533157758618	63.829	1.474	61.084	60.739	62.213	-2.7444					72	27	3	0	0	0	0.33652	1	4859	4859		58.782	2.0609	1	801380			38948	8952	32147	32169	42260	42260					0.016929607398765256
MVANLSRGP	9	Unmodified	_MVANLSRGP_					0	0	0		ENSG00000204147|ENST00000647317|ASAH2B	ENSG00000204147|ENST00000647317|ASAH2B	ENSG00000204147|ENST00000647317|ASAH2B	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.7535705566406	2	472.752744	943.490935	1.0184	0.00048145	-0.80801	-0.00038199	0.21039	9.9461E-05	472.75234742263694	64.577	1.9384	61.091	60.24	62.179	-3.4854					97	39	4	0	0	0	0.24951	1	4634	4634		68.787	10.976	1	3821600			38949	8952	32147	32169	42261	42261					0.016929607398765256
MVAPAVASV	9	Unmodified	_MVAPAVASV_					0	0	0		ENSG00000177606|ENST00000371222|JUN	ENSG00000177606|ENST00000371222|JUN	ENSG00000177606|ENST00000371222|JUN	MULTI-MSMS	OvCa99_classI_Rep5	1	422.7349853515625	2	422.733489	843.452425	2.593	0.0010962	0.42168	0.00017826	3.0147	0.0012744	422.73361732982687	95.017	0.50803	95.017	94.776	95.284	0					24	11	3	0	0	0	0.022571	1	10364	10364		143.97	64.035	1	714120			38950	7699	32148	32170	42262	42262					0.024436551053554467
MVARRTKYKK	10	Unmodified	_MVARRTKYKK_					0	0	0			REV__nc|ENSG00000187790|Q8IYD8-3|FANCM	REV__nc|ENSG00000187790|Q8IYD8-3|FANCM	MULTI-MSMS	OvCa9_classI_Rep4_	4	640.8889770507812	2	640.884624	1279.7547	4.2244	0.0027074	3.9588	0.0025372	8.1832	0.0052445	640.8870407090299	132.38	1.5362	130.88	130.54	132.07	-1.5015					82	30	4	0	0	0	0.74374	1	12775	12775		25.574	1.3713	1	355310	+		38951	22665	32149	32171	42263	42263					0.1260079584453706
MVASMSKR	8	Oxidation (M)	_MVASM(Oxidation (M))SKR_		MVASM(1)SKR		M(-70)VASM(70)SKR	0	0	1		nc|ENSG00000076321|Q9Y2M5-2|KLHL20;ENSG00000076321|ENST00000209884|KLHL20	nc|ENSG00000076321|Q9Y2M5-2|KLHL20	nc|ENSG00000076321|Q9Y2M5-2|KLHL20	MSMS	OvCa9_classI_Rep4_	4	463.2355041503906	2	463.23333	924.452107	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.386	1	69.989	69.489	70.489	-3.3961								0	0	0	0.30129	1	5686	5686		73.975	10.668	2				38952	1554	32150	32172	42264	42264		57			-0.013140878861349847
MVCLLEPVN	9	Unmodified	_MVCLLEPVN_					0	0	0		PLA1A|p.P436L|1|0.06|ENSG00000144837|chr3:119629404-119629404|C/T|missense_variant	PLA1A|p.P436L|1|0.06|ENSG00000144837|chr3:119629404-119629404|C/T|missense_variant	PLA1A|p.P436L|1|0.06|ENSG00000144837|chr3:119629404-119629404|C/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.7977600097656	2	509.259013	1016.50347	0.9364	0.00047687	-3.061	-0.0015589	-2.1246	-0.001082	509.2574158809514	111.25	0.6441	110.14	110	110.65	-1.1038					15	12	2	0	0	0	0.027441	1	8052	8052		49.442	8.6634	1	12581			38953	15505	32151	32173	42265	42265					-0.004117639121091088
MVCSCKKNEP	10	Unmodified	_MVCSCKKNEP_					0	0	0			REV__nc|ENSG00000067066|P23497|SP100	REV__nc|ENSG00000067066|P23497|SP100	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.307373046875	2	569.756312	1137.49807	-0.23534	-0.00013408	0.88171	0.00050236	0.64637	0.00036828	570.257832585341	104.82	0.25453	104.82	104.66	104.91	0					8	5	2	0	0	0	0.026867	1	11759	11759		35.152	3.6222	1	73505	+		38954	28726	32152	32174	42266	42266					-0.06517810766217735
MVDPQTKQG	9	Unmodified	_MVDPQTKQG_					0	0	0			REV__nc|ENSG00000157106|Q96Q15-4|SMG1	REV__nc|ENSG00000157106|Q96Q15-4|SMG1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.7646789550781	2	502.247492	1002.48043	-1.0816	-0.00054323	3.6838	0.0018502	2.6022	0.001307	502.24939868220326	52.813	0.44344	49.605	49.4	49.844	-3.208					20	8	3	0	0	0	0.027461	1	3165	3165		40.778	0.20554	1	229760	+		38955	20512	32153	32175	42267	42267					-0.020710667052071585
MVDTKVRR	8	Unmodified	_MVDTKVRR_					0	0	0		tr|A0A553SHN7|A0A553SHN7_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=walKPE=4SV=1	tr|A0A553SHN7|A0A553SHN7_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=walKPE=4SV=1	tr|A0A553SHN7|A0A553SHN7_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=walKPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.776123046875	2	502.787118	1003.55968	-1.4307	-0.00071934	-2.0821	-0.0010469	-3.5128	-0.0017662	503.28549471367654	73.416	0.5809	70.02	69.736	70.317	-3.3961					15	11	2	0	0	0	0.028476	1	5655	5655		23.042	4.7181	1	43161			38956	33290	32154	32176	42268	42268					0.05804625039581879
MVEDVRGPL	9	Unmodified	_MVEDVRGPL_					0	0	0			REV__ENST00000293860.5_1_16:97086-97278:-|nuORF	REV__ENST00000293860.5_1_16:97086-97278:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	508.26702880859375	2	508.265684	1014.51682	-1.0869	-0.00055243	-2.4556	-0.0012481	-3.5425	-0.0018005	508.2643414368282	95.752	1.8641	93.923	93.481	95.345	-1.8286					82	36	4	0	0	0	0.33652	1	6266	6266		58.782	3.2778	1	352820	+		38957	24174	32155	32177	42269	42269					0.010138101915003972
MVEKTKRLE	9	Unmodified	_MVEKTKRLE_					0	0	0			REV__ENSG00000155749|ENST00000392257|FLACC1	REV__ENSG00000155749|ENST00000392257|FLACC1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3211669921875	2	567.320991	1132.62743	-1.5919	-0.00090313	-1.0868	-0.00061655	-2.6787	-0.0015197	567.3204758129912	84.581	1.3452	83.034	82.745	84.091	-1.5462					89	26	5	0	0	0	0.14855	1	7344	7344		85.161	10.906	1	1915100	+		38958	20438	32156	32178	42270	42270					0.06642030179727954
MVENQVKEE	9	Unmodified	_MVENQVKEE_					0	0	0		tr|A0A553SFY6|A0A553SFY6_NIACICarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_09775PE=3SV=1	tr|A0A553SFY6|A0A553SFY6_NIACICarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_09775PE=3SV=1	tr|A0A553SFY6|A0A553SFY6_NIACICarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_09775PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.835693359375	2	553.263339	1104.51212	2.4822	0.0013733	-3.6992	-0.0020467	-1.2171	-0.00067335	553.261229517431	75.108	0.60762	75.108	74.761	75.369	0					31	14	3	0	0	0	0.027304	1	7451	7451		98.629	5.4339	1	1214000			38959	33095	32157	32179	42271	42271					-0.03595118741918668
MVERLYHM	8	Oxidation (M)	_MVERLYHM(Oxidation (M))_		MVERLYHM(1)		M(-48)VERLYHM(48)	0	0	1			REV__ENST00000525964.6_1_11:134022841-134052943:-|nuORF	REV__ENST00000525964.6_1_11:134022841-134052943:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	547.7610473632812	2	547.759712	1093.50487	-0.61568	-0.00033724	-0.029954	-1.6407E-05	-0.64563	-0.00035365	547.7591524956216	61.357	0.59343	61.357	61.071	61.665	0					28	13	3	0	0	0	0.66704	1	5394	5394		50.025	7.5501	2	2461900	+		38960	20238	32158	32180	42272	42272		472			-0.03814129823354051
MVERLYHM	8	Oxidation (M)	_MVERLYHM(Oxidation (M))_					0	0	1			REV__ENST00000525964.6_1_11:134022841-134052943:-|nuORF	REV__ENST00000525964.6_1_11:134022841-134052943:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	547.759712	1093.50487	0.063565	3.4819E-05	0.42634	0.00023353	0.4899	0.00026835	547.7601281694605	64.597	0.34001	61.112	61.018	61.358	-3.4854	-0.12255	0.00042233	NaN	50.025	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31219	+		38961	20238	32158	32180				472			-0.03814129823354051
MVESFKDEM	9	Unmodified	_MVESFKDEM_					0	0	0		tr|A0A553SP30|A0A553SP30_NIACIFlagellarmotorswitchproteinFliGOS=NialliacirculansOX=1397GN=fliGPE=3SV=1	tr|A0A553SP30|A0A553SP30_NIACIFlagellarmotorswitchproteinFliGOS=NialliacirculansOX=1397GN=fliGPE=3SV=1	tr|A0A553SP30|A0A553SP30_NIACIFlagellarmotorswitchproteinFliGOS=NialliacirculansOX=1397GN=fliGPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.2403564453125	2	558.241018	1114.46748	3.1131	0.0017378	-3.1526	-0.0017599	-0.039486	-2.2043E-05	558.2390583607403	130.11	1.3788	128.63	128.27	129.64	-1.4779					62	27	3	0	0	0	0.55011	1	12515	12515		37.812	0.65241	1	202230			38962	33996	32159	32181	42273	42273					-0.08517265879618208
MVESMEKVM	9	2 Oxidation (M)	_MVESM(Oxidation (M))EKVM(Oxidation (M))_		M(0.002)VESM(0.998)EKVM(1)		M(-28)VESM(28)EKVM(57)	0	0	2			REV__tr|A0A7D6VW02|A0A7D6VW02_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07250PE=4SV=1	REV__tr|A0A7D6VW02|A0A7D6VW02_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07250PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	558.2417602539062	2	558.242703	1114.47085	0.10444	5.8305E-05	-3.0182	-0.0016849	-2.9137	-0.0016266	558.2407957364876	129.77	1.2857	128.66	128.39	129.67	-1.1121					56	25	3	0	0	0	0.35444	1	10296	10296		56.721	7.2795	3	138850	+		38963	31739	32160	32182	42274	42274		703;704			-0.0818033909724818
MVFTVRLL	8	Unmodified	_MVFTVRLL_					0	0	0		nc|ENSG00000130529|Q8TD43-2|TRPM4;nc|ENSG00000130529|Q8TD43-3|TRPM4;ENSG00000130529|ENST00000252826|TRPM4	nc|ENSG00000130529|Q8TD43-2|TRPM4	nc|ENSG00000130529|Q8TD43-2|TRPM4	MULTI-MSMS	OvCa9_classI_Rep2	2	489.7957763671875	2	489.793881	977.573209	-0.22979	-0.00011255	4.0347	0.0019762	3.8049	0.0018636	489.795669737206	39.474	1.0919	36.764	36.459	37.551	-2.7097					56	21	4	0	0	0	0.74971	1	1944	1944		26.796	2.5934	1	203380			38964	3992	32161	32183	42275	42275					0.08352482818827411
MVFWRYPPR	9	Unmodified	_MVFWRYPPR_					0	0	0			REV__nc|ENSG00000070495|Q6NYC1-2|JMJD6	REV__nc|ENSG00000070495|Q6NYC1-2|JMJD6	MULTI-SECPEP	OvCa99_classI_Rep5	1	418.5634460449219	3	417.886699	1250.63827	-0.30396	-0.00012702	1.4459	0.00060424	1.142	0.00047722	418.22064317293683	37.367	0.18699	37.367	37.251	37.438	0					5	3	2	0	0	0	0.027462	1	2040	2040		19.104	0	1	7169.6	+		38965	16880	32162	32184	42276	42276					0.02297477344654908
MVGHKNEH	8	Unmodified	_MVGHKNEH_					0	0	0		nc|ENSG00000130177|Q13042-3|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;ENSG00000130177|ENST00000356221|CDC16;nc|ENSG00000130177|Q13042-4|CDC16;ENST00000494581.1_1_13:115011497-115012507:+|nuORF	nc|ENSG00000130177|Q13042-3|CDC16	nc|ENSG00000130177|Q13042-3|CDC16	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.75799560546875	2	476.226894	950.439234	-0.35408	-0.00016862	-3.024	-0.0014401	-3.3781	-0.0016087	476.22533534253614	55.294	0.54038	55.294	54.98	55.52	0					17	12	2	0	0	0	0.028476	1	4519	4519		25.45	13.939	1	769280			38966	3964	32163	32185	42277	42277					-0.03796782954032096
MVGLAWTVV	9	Unmodified	_MVGLAWTVV_					0	0	0			REV__ENSG00000099960|ENST00000382932|SLC7A4	REV__ENSG00000099960|ENST00000382932|SLC7A4	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.271728515625	2	488.270238	974.525924	0.041741	2.0381E-05	2.2124	0.0010803	2.2542	0.0011006	488.27130891605157	76.242	1.6718	73.303	72.449	74.121	-2.9389					67	34	5	0	0	0	0.32337	1	6038	6038		60.294	1.512	1	449040	+		38967	17345	32164	32186	42278	42278					0.03764203547814304
MVGRRFPEL	9	Unmodified	_MVGRRFPEL_					0	0	0			REV__nc|ENSG00000242110|Q9UHK6-4|AMACR	REV__nc|ENSG00000242110|Q9UHK6-4|AMACR	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.2796020507812	2	552.802768	1103.59098	1.3595	0.00075154	3.3797	0.0018683	4.7392	0.0026199	552.8047535592319	113.21	0.88982	113.09	112.77	113.66	-0.12174					24	17	3	0	0	0	0.027462	1	10794	10794		39.253	15.05	1	19028	+		38968	15627	32165	32187	42279	42279					0.0433319807366388
MVGRSVHLQ	9	Unmodified	_MVGRSVHLQ_					0	0	0		ENST00000493762.1_1_3:169650279-169650495:+|nuORF	ENST00000493762.1_1_3:169650279-169650495:+|nuORF	ENST00000493762.1_1_3:169650279-169650495:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.8143920898438	2	513.779293	1025.54403	-0.46534	-0.00023908	-2.4415	-0.0012544	-2.9068	-0.0014935	513.7773759392381	96.786	0.82515	94.957	94.571	95.396	-1.8286					19	15	2	0	0	0	0.027118	1	6348	6348		64.207	0	1	19932			38969	12741	32166	32188	42280	42280					0.03228338522535523
MVGRTDVLTV	10	Unmodified	_MVGRTDVLTV_					0	0	0		tr|A0A553SMP5|A0A553SMP5_NIACIGlutamatesynthaselargesubunitOS=NialliacirculansOX=1397GN=CEQ21_22985PE=3SV=1	tr|A0A553SMP5|A0A553SMP5_NIACIGlutamatesynthaselargesubunitOS=NialliacirculansOX=1397GN=CEQ21_22985PE=3SV=1	tr|A0A553SMP5|A0A553SMP5_NIACIGlutamatesynthaselargesubunitOS=NialliacirculansOX=1397GN=CEQ21_22985PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	545.7980346679688	2	545.799891	1089.58523	1.3428	0.00073288	-3.1531	-0.001721	-1.8103	-0.00098808	545.7971776521719	87.492	2.9596	86.061	85.741	88.701	-1.4311					130	59	5	0	0	0	0.28422	1	7650	7650		82.75	7.7072	1	690390			38970	33858	32167	32189	42281	42281					0.04402054771321673
MVGRTDVLTV	10	Unmodified	_MVGRTDVLTV_					0	0	0		tr|A0A553SMP5|A0A553SMP5_NIACIGlutamatesynthaselargesubunitOS=NialliacirculansOX=1397GN=CEQ21_22985PE=3SV=1	tr|A0A553SMP5|A0A553SMP5_NIACIGlutamatesynthaselargesubunitOS=NialliacirculansOX=1397GN=CEQ21_22985PE=3SV=1	tr|A0A553SMP5|A0A553SMP5_NIACIGlutamatesynthaselargesubunitOS=NialliacirculansOX=1397GN=CEQ21_22985PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	545.7969970703125	2	545.799891	1089.58523	-0.72872	-0.00039774	-0.60526	-0.00033035	-1.334	-0.00072808	545.7982663676476	88.421	2.9172	86.29	85.906	88.823	-2.1309					132	57	5	0	0	0	0.32141	1	5389	5389		78.264	4.0087	1	1130600			38971	33858	32167	32189	42282	42282					0.04402054771321673
MVGVKGTNCKF	11	Carbamidomethyl (C)	_MVGVKGTNC(Carbamidomethyl (C))KF_	MVGVKGTNC(1)KF		MVGVKGTNC(41)KF		0	1	0		ENST00000525499.1_1_11:111234081-111234617:-|nuORF	ENST00000525499.1_1_11:111234081-111234617:-|nuORF	ENST00000525499.1_1_11:111234081-111234617:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	414.2110290527344	3	414.210743	1239.6104	0.28415	0.0001177	-2.9362	-0.0012162	-2.6521	-0.0010985	414.2094540183585	49.088	5.926	49.088	48.204	54.13	0					277	137	3	0	0	0	0.63942	1	3629	3629		41.08	9.4458	1	1950600			38972	13194	32168	32190	42283	42283	154				0.00017786302237254858
MVGVKRLI	8	Oxidation (M)	_M(Oxidation (M))VGVKRLI_		M(1)VGVKRLI		M(71)VGVKRLI	0	0	1		ENST00000602875.5_1_5:139930287-139937028:-|nuORF;ENSG00000213523|ENST00000336283|SRA1	ENST00000602875.5_1_5:139930287-139937028:-|nuORF	ENST00000602875.5_1_5:139930287-139937028:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.28857421875	2	466.291505	930.568457	-0.23749	-0.00011074	-3.5217	-0.0016421	-3.7592	-0.0017529	466.2897232472392	121.61	1.2284	120.26	119.9	121.13	-1.3479					54	23	3	0	0	0	0.56113	1	11468	11468		71.378	19.079	1	95950			38973	9132	32169	32191	42284	42284		274			0.10039598676075911
MVHLGANLEK	10	Unmodified	_MVHLGANLEK_					0	0	0			REV__ENSG00000249581|ENST00000511148|CLRN2	REV__ENSG00000249581|ENST00000511148|CLRN2	MULTI-MSMS	OvCa9_classI_Rep2	2	556.2964477539062	2	556.300059	1110.58556	-1.6853	-0.00093754	-3.6045	-0.0020052	-5.2898	-0.0029427	556.2978707720932	145.91	1.2406	145.68	145.33	146.57	-0.22696					55	24	3	0	0	0	0.66721	1	14724	14724		34.173	5.023	1	88978	+		38974	23488	32170	32192	42285	42285					0.03469474491203073
MVHLLGLP	8	Unmodified	_MVHLLGLP_					0	0	0		ENST00000355947.6_1_7:99489387-99489726:-|nuORF	ENST00000355947.6_1_7:99489387-99489726:-|nuORF	ENST00000355947.6_1_7:99489387-99489726:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	439.7947692871094	2	440.259674	878.504795	0.21709	9.5577E-05	-3.0749	-0.0013538	-2.8578	-0.0012582	440.2583573755026	111.92	0.83685	110.41	110.21	111.05	-1.5111					20	15	2	0	0	0	0.028476	1	10395	10395		24.504	14.319	1	28519			38975	10688	32171	32193	42286	42286					0.060682382389586564
MVIAQENLGA	10	Unmodified	_MVIAQENLGA_					0	0	0		nc|ENSG00000138400|Q5I0G3-2|MDH1B;ENSG00000138400|ENST00000374412|MDH1B;ENST00000471988.1_1_2:207621575-207629995:-|nuORF;nc|ENSG00000138400|Q5I0G3-3|MDH1B	nc|ENSG00000138400|Q5I0G3-2|MDH1B	nc|ENSG00000138400|Q5I0G3-2|MDH1B	MULTI-MSMS	OvCa9_classI_Rep2	2	523.2697143554688	2	523.270967	1044.52738	0.43586	0.00022808	-3.9851	-0.0020853	-3.5493	-0.0018572	523.2687191280446	110.76	1.4312	110.62	110.19	111.62	-0.13961					94	28	4	0	0	0	0.44431	1	10494	10494		62.107	3.3255	1	245360			38976	4685	32172	32194	42287	42287					0.006897928459011382
MVIAYFSR	8	Unmodified	_MVIAYFSR_					0	0	0		nc|ENSG00000214300|A6NKU9-2|SPDYE3;nc|ENSG00000205482|P0DV79|SPDYE18;ENSG00000260097|ENST00000563237|SPDYE6;ENSG00000170092|ENST00000625065|SPDYE5;ENSG00000173678|ENST00000507450|SPDYE2B;ENSG00000205238|ENST00000691607|SPDYE2;ENSG00000136206|ENST00000693451|SPDYE1;ENSG00000185040|ENST00000633306|SPDYE16;nc|ENSG00000136206|Q8NFV5|SPDYE1;ENSG00000183318|ENST00000689094|SPDYE4;ENSG00000262461|ENST00000575125|SPDYE9;ENSG00000273520|ENST00000333385|SPDYE8;nc|ENSG00000184616|P0DUX1|SPDYE12;ENSG00000186645|ENST00000671986|SPDYE17;nc|ENSG00000286014|P0DUD4|SPDYE15;nc|ENSG00000205238|Q495Y8-2|SPDYE2;ENSG00000214300|ENST00000332397|SPDYE3	nc|ENSG00000214300|A6NKU9-2|SPDYE3	nc|ENSG00000214300|A6NKU9-2|SPDYE3	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.75921630859375	2	493.760038	985.505523	3.5833	0.0017693	-1.6761	-0.00082761	1.9071	0.00094167	493.7590664833101	133.64	1.4269	132.12	131.8	133.23	-1.5257					73	28	4	0	0	0	0.64026	1	12969	12969		55.504	13.108	1	430880			38977	4472	32173	32195	42288	42288					0.012190328880137713
MVICILPND	9	Unmodified	_MVICILPND_					0	0	0		ENSG00000184571|ENST00000616349|PIWIL3	ENSG00000184571|ENST00000616349|PIWIL3	ENSG00000184571|ENST00000616349|PIWIL3	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.30694580078125	2	509.259013	1016.50347	-0.022521	-1.1469E-05	1.407	0.00071654	1.3845	0.00070507	509.25970445394563	96.323	1.4859	95.295	94.318	95.804	-1.0281					70	29	3	0	0	0	0.027392	1	8723	8723		85.359	32.008	1	64426			38978	8171	32174	32196	42289	42289					-0.004117639121204775
MVIFPRGMP	9	Unmodified	_MVIFPRGMP_					0	0	0		ENST00000396920.7_3_10:13344313-13344355:-|nuORF	ENST00000396920.7_3_10:13344313-13344355:-|nuORF	ENST00000396920.7_3_10:13344313-13344355:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	524.2783813476562	2	524.277541	1046.54053	1.2201	0.00063968	0.96972	0.0005084	2.1898	0.0011481	524.2778574863617	62.52	2.1768	59.486	58.872	61.049	-3.0339					76	45	2	0	0	0	0.64339	1	2295	2295		26.796	0.10319	1	81064			38979	11327	32175	32197	42290	42290					0.019119524243251362
MVIKSLIF	8	Unmodified	_MVIKSLIF_					0	0	0		ENST00000461041.1_1_9:15423144-15433670:+|nuORF	ENST00000461041.1_1_9:15423144-15433670:+|nuORF	ENST00000461041.1_1_9:15423144-15433670:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.6091613769531	2	475.790807	949.56706	-0.33797	-0.0001608	3.8469	0.0018303	3.509	0.0016695	475.792555813026	81.153	1.5555	78.442	78.15	79.706	-2.7106					103	31	6	0	0	0	0.028476	1	6685	6685		44.531	0	1	2134700			38980	12167	32176	32198	42291	42291					0.09025964587294766
MVIMRLTDV	9	Unmodified	_MVIMRLTDV_					0	0	0		tr|A0A553SGG7|A0A553SGG7_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_10845PE=3SV=1	tr|A0A553SGG7|A0A553SGG7_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_10845PE=3SV=1	tr|A0A553SGG7|A0A553SGG7_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_10845PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	539.289794921875	2	539.293388	1076.57222	-2.599	-0.0014016	-3.6223	-0.0019535	-6.2214	-0.0033551	539.2913266453872	108.37	2.7258	106.64	105.48	108.21	-1.7256					92	53	3	0	0	0	0.27001	1	9910	9910		66.429	0.6261	1	121890			38981	33155	32177	32199	42292	42292					0.036999003875962444
MVIPRMVIS	9	Unmodified	_MVIPRMVIS_					0	0	0		ENST00000468700.1_1_3:23996165-23996213:+|nuORF	ENST00000468700.1_1_3:23996165-23996213:+|nuORF	ENST00000468700.1_1_3:23996165-23996213:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	523.2989501953125	2	523.298473	1044.58239	1.7069	0.00089324	-0.51008	-0.00026693	1.1969	0.00062631	523.2981318011693	95.309	2.0614	95.309	94.905	96.966	0					117	48	5	0	0	0	0.11471	2	10446	10414;10446		93.195	2.5946	1	15533000			38982	12334	32178	32200	42293;42294	42294					0.06188508112836644
MVIVNALANI	10	Unmodified	_MVIVNALANI_					0	0	0		tr|A0A553SH14|A0A553SH14_NIACITryptophan-richsensoryproteinOS=NialliacirculansOX=1397GN=CEQ21_11910PE=3SV=1	tr|A0A553SH14|A0A553SH14_NIACITryptophan-richsensoryproteinOS=NialliacirculansOX=1397GN=CEQ21_11910PE=3SV=1	tr|A0A553SH14|A0A553SH14_NIACITryptophan-richsensoryproteinOS=NialliacirculansOX=1397GN=CEQ21_11910PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.8103637695312	2	529.307352	1056.60015	2.1326	0.0011288	1.4953	0.00079145	3.6279	0.0019203	529.3073341088906	95.198	1.4369	95.198	94.56	95.997	0					96	33	5	0	0	0	0.3976	2	10392	10384;10392		68.787	5.4806	1	4517200			38983	33219	32179	32201	42295;42296	42296					0.074115466393323
MVKAGLGVNV	10	Unmodified	_MVKAGLGVNV_					0	0	0		ENST00000471405.5_1_7:135366313-135386730:-|nuORF;nc|ENSG00000164707|Q9UKG4|SLC13A4;chr7:135705650-135706128|176|19.24|0.71|4.75|-|ENST00000354042|SLC13A4,SLC13A4;ENSG00000164707|ENST00000682651|SLC13A4	ENST00000471405.5_1_7:135366313-135386730:-|nuORF	ENST00000471405.5_1_7:135366313-135386730:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	494.2869873046875	2	494.28642	986.558287	-1.2403	-0.00061306	0.87686	0.00043342	-0.36342	-0.00017964	494.28670132933	84.122	2.6507	81.861	81.346	83.997	-2.261					153	54	4	0	0	0	0.31157	1	4896	4896		79.451	2.6044	1	2419900			38984	524	32180	32202	42297	42297					0.06446990950826148
MVKGRLQLF	9	Unmodified	_MVKGRLQLF_					0	0	0		tr|A0A553SG26|A0A553SG26_NIACIB3/B4tRNA-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09990PE=4SV=1	tr|A0A553SG26|A0A553SG26_NIACIB3/B4tRNA-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09990PE=4SV=1	tr|A0A553SG26|A0A553SG26_NIACIB3/B4tRNA-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09990PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	546.3204956054688	2	546.323337	1090.63212	-2.5941	-0.0014172	-1.8322	-0.001001	-4.4263	-0.0024182	546.3218690878751	140.9	1.3767	139.86	139.33	140.71	-1.0339					60	27	3	0	0	0	0.38529	1	11631	11631		53.351	3.3269	1	135350			38985	33111	32181	32203	42298	42298					0.09042959113139659
MVKGRLQLF	9	Unmodified	_MVKGRLQLF_					0	0	0		tr|A0A553SG26|A0A553SG26_NIACIB3/B4tRNA-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09990PE=4SV=1	tr|A0A553SG26|A0A553SG26_NIACIB3/B4tRNA-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09990PE=4SV=1	tr|A0A553SG26|A0A553SG26_NIACIB3/B4tRNA-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09990PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.3209838867188	2	546.323337	1090.63212	0.036942	2.0182E-05	-4.2916	-0.0023446	-4.2546	-0.0023244	546.3204746576425	141.32	3.3559	139.86	139.56	142.91	-1.4627					97	64	3	0	0	0	0.52083	1	13849	13849		40.573	1.3198	1	132850			38986	33111	32181	32203	42299	42299					0.09042959113139659
MVKIYSIT	8	Unmodified	_MVKIYSIT_					0	0	0		nc|ENSG00000164659|A8MWY0-2|ELAPOR2;nc|ENSG00000164659|A8MWY0-3|ELAPOR2;ENSG00000164659|ENST00000450689|ELAPOR2	nc|ENSG00000164659|A8MWY0-2|ELAPOR2	nc|ENSG00000164659|A8MWY0-2|ELAPOR2	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.7734375	2	477.770071	953.52559	-0.44148	-0.00021092	3.5026	0.0016734	3.0611	0.0014625	477.77173142761416	73.753	1.9165	70.357	70.027	71.944	-3.3961					89	39	3	0	0	0	0.66704	1	5758	5758		50.025	0.58299	1	2539800			38987	6474	32182	32204	42300	42300					0.046967838279670104
MVKLNLGEG	9	Unmodified	_MVKLNLGEG_					0	0	0			REV__ENSG00000182578|ENST00000675795|CSF1R	REV__ENSG00000182578|ENST00000675795|CSF1R	MULTI-SECPEP	OvCa9_classI_Rep3	3	481.27789306640625	2	480.762778	959.511002	-0.46993	-0.00022593	-0.039493	-1.8987E-05	-0.50943	-0.00024491	480.7625233497472	81.703	1.5999	79.381	78.854	80.454	-2.3226					63	31	4	0	0	0	0.027453	1	4681	4681		30.318	0	1	188940	+		38988	22303	32183	32205	42301	42301					0.029627116798337738
MVKSKKQEI	9	Unmodified	_MVKSKKQEI_					0	0	0		nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;ENST00000464381.5_1_17:15935612-15961439:-|nuORF;ENST00000470782.5_1_17:15935612-15971511:-|nuORF;ENST00000443451.6_1_12:124809950-124819187:-|nuORF;ENST00000461081.2_1_12:124816664-124819403:-|nuORF;nc|ENSG00000196498|Q9Y618-2|NCOR2;nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000141027|O75376-2|NCOR1;nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000141027|O75376-2|NCOR1	MULTI-MSMS	OvCa9_classI_Rep2	2	545.8165283203125	2	545.818084	1089.62162	-1.197	-0.00065337	-2.1901	-0.0011954	-3.3871	-0.0018488	545.8167800423154	120.61	1.2338	120.42	120.06	121.3	-0.19718					56	24	3	0	0	0	0.51865	1	11652	11652		40.778	0	1	190390			38989	4891;8615	32184	32206	42302	42302					0.08038931668056648
MVKVRRYME	9	Oxidation (M)	_MVKVRRYM(Oxidation (M))E_		MVKVRRYM(1)E		M(-51)VKVRRYM(51)E	0	0	1		tr|A0A553SP41|A0A553SP41_NIACISuccinate--CoAligase[ADP-forming]subunitalphaOS=NialliacirculansOX=1397GN=sucDPE=3SV=1	tr|A0A553SP41|A0A553SP41_NIACISuccinate--CoAligase[ADP-forming]subunitalphaOS=NialliacirculansOX=1397GN=sucDPE=3SV=1	tr|A0A553SP41|A0A553SP41_NIACISuccinate--CoAligase[ADP-forming]subunitalphaOS=NialliacirculansOX=1397GN=sucDPE=3SV=1	MSMS	OvCa99_classI_Rep5	1	409.8840637207031	3	409.882737	1226.62638	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.137	1	88.137	87.637	88.637	0								0	0	0	0.16997	1	9361	9361		51.335	16.183	2				38990	34001	32185	32207	42303	42303		748			0.02213492539181061
MVLAQRRR	8	Unmodified	_MVLAQRRR_					0	0	0		nc|ENSG00000124228|Q96GQ7|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF	nc|ENSG00000124228|Q96GQ7|DDX27	nc|ENSG00000124228|Q96GQ7|DDX27	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.8294677734375	2	515.308552	1028.60255	0.40039	0.00020632	-1.3093	-0.00067468	-0.90888	-0.00046835	515.3077105879272	133.25	1.2332	133.03	132.47	133.71	-0.22697					45	24	3	0	0	0	0.028476	1	13168	13168		44.531	0	1	45522			38991	14999	32186	32208	42304	42304					0.08939439887672052
MVLCVESFSD	10	Unmodified	_MVLCVESFSD_					0	0	0		ENST00000419888.1_1_20:18763070-18763415:-|nuORF	ENST00000419888.1_1_20:18763070-18763415:-|nuORF	ENST00000419888.1_1_20:18763070-18763415:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	564.3255615234375	2	565.248843	1128.48313	-0.40017	-0.0002262	-2.9718	-0.0016798	-3.372	-0.001906	565.2470383002592	102.98	0.94351	101.46	101.1	102.05	-1.5211					37	17	3	0	0	0	0.026782	1	7069	7069		45.972	11.8	1	64162			38992	11662	32187	32209	42305	42305					-0.0759697936257453
MVLFFGIVTV	10	Unmodified	_MVLFFGIVTV_					0	0	0			REV__tr|A0A7D7A072|A0A7D7A072_9CLOTDUF3899domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22930PE=4SV=1	REV__tr|A0A7D7A072|A0A7D7A072_9CLOTDUF3899domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22930PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	563.3200073242188	2	563.322471	1124.63039	-3.8795	-0.0021854	-2.6837	-0.0015118	-6.5631	-0.0036972	563.3208339373161	155.36	0.8447	155.13	154.8	155.64	-0.22697					43	26	2	0	0	0	0.72319	1	15850	15850		27.882	1.0861	1	63890	+		38993	32439	32188	32210	42306	42306					0.07305905304542648
MVLILKSQS	9	Unmodified	_MVLILKSQS_					0	0	0		ENST00000497054.5_1_2:74392398-74392476:-|nuORF	ENST00000497054.5_1_2:74392398-74392476:-|nuORF	ENST00000497054.5_1_2:74392398-74392476:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.8036193847656	2	509.801903	1017.58925	2.0238	0.0010317	1.6092	0.00082039	3.633	0.0018521	509.80258654056354	136.53	4.9049	134.99	133.61	138.51	-1.5437					290	101	5	0	0	0	0.62352	1	13194	13194		29.15	1.2673	1	173450			38994	12800	32189	32211	42307	42307					0.08116144265068215
MVLIYIMV	8	Unmodified	_MVLIYIMV_					0	0	0			REV__tr|A0A7D6ZXM6|A0A7D6ZXM6_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13760PE=4SV=1	REV__tr|A0A7D6ZXM6|A0A7D6ZXM6_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13760PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	490.7366027832031	2	491.279218	980.543882	0.5767	0.00028332	2.8772	0.0014135	3.4539	0.0016968	491.2807567949753	78.495	2.0857	76.755	76.092	78.177	-1.7398					73	40	3	0	0	0	0.028476	1	6503	6503		33.493	0	1	79469	+		38995	32338	32190	32212	42308	42308					0.05283202478312887
MVLKKEGIK	9	Unmodified	_MVLKKEGIK_					0	0	0		ENST00000507707.1_1_5:42466060-42468762:-|nuORF	ENST00000507707.1_1_5:42466060-42468762:-|nuORF	ENST00000507707.1_1_5:42466060-42468762:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	523.3248901367188	2	523.325545	1044.63654	1.4419	0.00075456	-2.9141	-0.001525	-1.4722	-0.00077046	523.3237560437976	110.2	0.81014	110.2	109.86	110.67	0					44	17	4	0	0	0	0.16562	1	12504	12504		82.241	5.3939	1	1373500			38996	12933	32191	32213	42309	42309					0.11600423536060589
MVLLAGRAAE	10	Unmodified	_MVLLAGRAAE_					0	0	0		tr|A0A7D6VVN7|A0A7D6VVN7_9CLOTATP-dependentzincmetalloproteaseFtsHOS=ClostridiumintestinaleOX=36845GN=hflBPE=3SV=1	tr|A0A7D6VVN7|A0A7D6VVN7_9CLOTATP-dependentzincmetalloproteaseFtsHOS=ClostridiumintestinaleOX=36845GN=hflBPE=3SV=1	tr|A0A7D6VVN7|A0A7D6VVN7_9CLOTATP-dependentzincmetalloproteaseFtsHOS=ClostridiumintestinaleOX=36845GN=hflBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	515.7864379882812	2	515.789327	1029.5641	0.015208	7.8439E-06	-3.8874	-0.0020051	-3.8722	-0.0019972	515.7873046158662	78.2	1.7356	76.46	75.672	77.408	-1.7398					60	30	3	0	0	0	0.49558	1	6538	6538		54.776	5.3348	1	581100			38997	35228	32192	32214	42310	42310					0.050500894624974535
MVLLDFPPL	9	Unmodified	_MVLLDFPPL_					0	0	0		ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	ENSG00000213380|ENST00000306875|COG8	MULTI-SECPEP	OvCa9_classI_Rep3	3	522.7998657226562	2	522.793546	1043.57254	-0.49309	-0.00025778	-0.043571	-2.2779E-05	-0.53666	-0.00028056	522.7929782865893	102.66	1.3619	101.14	100.79	102.15	-1.5211					39	25	3	0	0	0	0.027462	1	7033	7033		13.775	0	1	102680			38998	9125	32193	32215	42311	42311					0.052496433791020536
MVLLHRPD	8	Unmodified	_MVLLHRPD_					0	0	0			REV__ENSG00000105675|ENST00000262623|ATP4A	REV__ENSG00000105675|ENST00000262623|ATP4A	MULTI-MSMS	OvCa9_classI_Rep2	2	490.7735595703125	2	490.770937	979.527321	2.0698	0.0010158	4.3804	0.0021498	6.4503	0.0031656	490.77300710457405	90.601	2.1684	89.299	88.879	91.048	-1.302					68	41	3	0	0	0	0.42208	2	8028	8016;8028		85.359	5.5092	1	702090	+		38999	17747	32194	32216	42312;42313	42313					0.03673837636586086
MVLLMGIILI	10	Unmodified	_MVLLMGIILI_					0	0	0		tr|A0A553ST48|A0A553ST48_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04300PE=4SV=1	tr|A0A553ST48|A0A553ST48_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04300PE=4SV=1	tr|A0A553ST48|A0A553ST48_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04300PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.35107421875	2	558.350174	1114.6858	0.95616	0.00053387	-1.2327	-0.00068828	-0.27653	-0.0001544	558.3495032263	83.609	2.0584	80.946	80.486	82.544	-2.6629					122	42	4	0	0	0	0.49566	1	7007	7007		54.765	0	1	1274500			39000	34454	32195	32217	42314	42314					0.1330399550065522
MVLLPLVLC	9	Unmodified	_MVLLPLVLC_					0	0	0			REV__ENSG00000183625|ENST00000395940|CCR3	REV__ENSG00000183625|ENST00000395940|CCR3	MULTI-MSMS	OvCa9_classI_Rep2	2	500.7985534667969	2	500.800317	999.586081	-3.3891	-0.0016973	-0.41807	-0.00020937	-3.8072	-0.0019066	500.79997207948645	149.12	1.1552	148.89	148.52	149.67	-0.22696					61	22	4	0	0	0	0.70973	1	15116	15116		14.664	0	1	177980	+		39001	22372	32196	32218	42315	42315					0.08627177886694426
MVLNSKIPK	9	Unmodified	_MVLNSKIPK_					0	0	0		ENST00000528578.5_1_11:118390386-118398211:-|nuORF	ENST00000528578.5_1_11:118390386-118398211:-|nuORF	ENST00000528578.5_1_11:118390386-118398211:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.2705078125	2	515.309895	1028.60524	-0.56187	-0.00028954	-0.49245	-0.00025377	-1.0543	-0.0005433	515.3096379016093	101.33	2.7679	99.063	98.883	101.65	-2.2665					81	53	2	0	0	0	0.027418	1	9389	9389		49.442	0	1	144350			39002	13258	32197	32219	42316	42316					0.09207850501957182
MVLQFLRNN	9	Unmodified	_MVLQFLRNN_					0	0	0			REV__nc|ENSG00000085433|O94967-2|WDR47	REV__nc|ENSG00000085433|O94967-2|WDR47	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.3214111328125	2	567.808051	1133.60155	-1.2389	-0.00070348	-3.2854	-0.0018655	-4.5244	-0.002569	567.807995604722	85.8	0.35057	83.579	83.335	83.686	-2.2204					9	6	2	0	0	0	0.027408	1	5066	5066		68.485	12.051	1	15272	+		39003	28743	32198	32220	42317	42317					0.04009180728121464
MVLQFLRNN	9	Unmodified	_MVLQFLRNN_					0	0	0			REV__nc|ENSG00000085433|O94967-2|WDR47	REV__nc|ENSG00000085433|O94967-2|WDR47	MULTI-MATCH	OvCa99_classI_Rep5	1		2	567.808051	1133.60155	1.5645	0.00088836	-6.8388	-0.0038831	-5.2743	-0.0029948	567.8044287068442	83.63	0.46542	83.63	83.335	83.801	0	0.025454	-0.00087495	NaN	68.485	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	280370	+		39004	28743	32198	32220							0.04009180728121464
MVLRLHVN	8	Unmodified	_MVLRLHVN_					0	0	0		ENST00000554012.5_1_14:96176735-96176822:-|nuORF	ENST00000554012.5_1_14:96176735-96176822:-|nuORF	ENST00000554012.5_1_14:96176735-96176822:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	490.7740173339844	2	491.286754	980.558955	2.2341	0.0010976	4.0836	0.0020062	6.3177	0.0031038	491.2885405288873	90.305	1.731	89.003	88.581	90.312	-1.302					43	33	2	0	0	0	0.028476	1	8016	8016		71.378	21.353	1	90201			39005	13630	32199	32221	42318	42318					0.06789830390528095
MVLSPSPPHP	10	Unmodified	_MVLSPSPPHP_					0	0	0		ENST00000466525.1_1_12:6645960-6646242:+|nuORF	ENST00000466525.1_1_12:6645960-6646242:+|nuORF	ENST00000466525.1_1_12:6645960-6646242:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	531.2764892578125	2	531.276052	1060.53755	-0.89928	-0.00047777	2.8018	0.0014885	1.9025	0.0010108	531.2775331640955	85.76	2.0555	83.54	82.937	84.992	-2.2204					88	40	3	0	0	0	0.26259	1	5064	5064		85.359	5.6469	1	1646200			39006	12293	32200	32222	42319	42319					0.00970400571168284
MVLTACRIF	9	Unmodified	_MVLTACRIF_					0	0	0		ENST00000260323.15_1_15:54435829-54528631:+|nuORF	ENST00000260323.15_1_15:54435829-54528631:+|nuORF	ENST00000260323.15_1_15:54435829-54528631:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	527.2823486328125	2	527.282823	1052.55109	-1.0628	-0.00056039	-0.039322	-2.0734E-05	-1.1021	-0.00058112	527.2826541808121	56.719	1.6865	53.915	53.374	55.06	-2.804					115	33	5	0	0	0	0.38529	1	4005	4005		53.351	3.9099	1	682000			39007	9848	32201	32223	42320	42320					0.0269193507874661
MVLVHQLALL	10	Unmodified	_MVLVHQLALL_					0	0	0			REV__SLC23A3|p.S254Qfs*15|1|0.31|ENSG00000213901|chr2:219168234-219168234|T/-|frameshift_variant	REV__SLC23A3|p.S254Qfs*15|1|0.31|ENSG00000213901|chr2:219168234-219168234|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	568.8458862304688	2	568.846645	1135.67874	-0.94066	-0.00053509	0.78408	0.00044602	-0.15658	-8.9071E-05	568.8468987403617	122.03	1.7301	121.81	120.93	122.66	-0.21803					88	34	3	0	0	0	0.64063	1	11782	11782		37.159	6.6555	1	269790	+		39008	23274	32202	32224	42321	42321					0.11632398944425404
MVLVHQLALL	10	Unmodified	_MVLVHQLALL_					0	0	0			REV__SLC23A3|p.S254Qfs*15|1|0.31|ENSG00000213901|chr2:219168234-219168234|T/-|frameshift_variant	REV__SLC23A3|p.S254Qfs*15|1|0.31|ENSG00000213901|chr2:219168234-219168234|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	568.845947265625	2	568.846645	1135.67874	1.1361	0.00064626	-1.1496	-0.00065395	-0.013528	-7.6955E-06	568.845786397459	122.98	2.0826	121.95	121	123.08	-1.034					125	39	4	0	0	0	0.59703	1	9449	9449		42.396	6.7778	1	474050	+		39009	23274	32202	32224	42322	42322					0.11632398944425404
MVMVRSLEP	9	Unmodified	_MVMVRSLEP_					0	0	0		ENSG00000196821|ENST00000374023|ILRUN	ENSG00000196821|ENST00000374023|ILRUN	ENSG00000196821|ENST00000374023|ILRUN	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.2776489257812	2	531.277738	1060.54092	-0.046814	-2.4871E-05	-2.7203	-0.0014452	-2.7671	-0.0014701	531.2761980218208	86.656	1.3398	84.03	83.613	84.952	-2.6269					70	26	3	0	0	0	0.27001	2	7339	7339;7351		66.429	7.6473	1	1610400			39010	8652	32203	32225	42323;42324	42323					0.013073273534928376
MVNCHSLPE	9	Unmodified	_MVNCHSLPE_					0	0	0			REV__ENSG00000105556|ENST00000264819|MIER2	REV__ENSG00000105556|ENST00000264819|MIER2	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.283447265625	2	515.228245	1028.44194	0.94197	0.00048533	-3.3953	-0.0017494	-2.4534	-0.001264	515.2265862820994	106.53	0.4689	105.26	105.01	105.48	-1.267					10	8	2	0	0	0	0.027462	1	7516	7516		26.693	6.2111	1	6018.1	+		39011	17737	32204	32226	42325	42325					-0.07114695611380739
MVNIFTDLY	9	Unmodified	_MVNIFTDLY_					0	0	0		nc|ENSG00000147130|Q14202-2|ZMYM3;ENSG00000147130|ENST00000314425|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	nc|ENSG00000147130|Q14202-2|ZMYM3	MULTI-SECPEP	OvCa9_classI_Rep2	2	557.8213500976562	2	558.275718	1114.53688	0.38541	0.00021517	3.3292	0.0018586	3.7146	0.0020738	558.2774964313727	97.83	0.8802	96.872	96.513	97.393	-0.95857					26	17	2	0	0	0	0.027462	1	8923	8923		32.812	0	1	52130			39012	5333	32205	32227	42326	42326					-0.01580438868541023
MVNSKYRR	8	Unmodified	_MVNSKYRR_					0	0	0			REV__nc|ENSG00000179709|Q86W28-2|NLRP8	REV__nc|ENSG00000179709|Q86W28-2|NLRP8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.2649536132812	2	527.284743	1052.55493	-0.95561	-0.00050388	3.8283	0.0020186	2.8727	0.0015147	527.7888174634021	94.736	0.4007	92.268	92.06	92.46	-2.4685					9	7	2	0	0	0	0.028476	1	8309	8309		18.324	0	1	20834	+		39013	22137	32206	32228	42327	42327					0.030757408968156597
MVNSSGRA	8	Oxidation (M)	_M(Oxidation (M))VNSSGRA_		M(1)VNSSGRA		M(71)VNSSGRA	0	0	1		PTPRT|p.A752Gfs*77|1|0.29|ENSG00000196090|chr20:42248744-42248745|-/GGGAGCAGGGGAGGAGACAGGGTCTGGCTAGAAC|frameshift_variant;PTPRT|p.S834Ffs*21|1|0.38|ENSG00000196090|chr20:42161522-42161534|GCTCCCCGCGGCT/-|frameshift_variant;chr20:42199388-42248687|137|16.46|0.87|4.24|-|ENST00000373201|PTPRT,PTPRT;chr20:42161539-42199240|139|14.26|0.81|4.13|-|ENST00000373190|PTPRT,PTPRT;ENSG00000196090|ENST00000373187|PTPRT;chr20:42116098-42118403|125|12.59|0.57|4.46|-|ENST00000373184|PTPRT,PTPRT;chr20:42115315-42116039|128|12.88|0.61|4.4|-|ENST00000373184|PTPRT,PTPRT;nc|ENSG00000196090|O14522-1|PTPRT	PTPRT|p.A752Gfs*77|1|0.29|ENSG00000196090|chr20:42248744-42248745|-/GGGAGCAGGGGAGGAGACAGGGTCTGGCTAGAAC|frameshift_variant	PTPRT|p.A752Gfs*77|1|0.29|ENSG00000196090|chr20:42248744-42248745|-/GGGAGCAGGGGAGGAGACAGGGTCTGGCTAGAAC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	419.1976318359375	2	419.197802	836.381051	0.82118	0.00034423	0.017371	7.2818E-06	0.83855	0.00035152	419.1977562593951	45.431	2.1793	45.431	45.114	47.294	0					101	49	5	0	0	0	0.56195	2	3154	3124;3154		71.296	17.441	1	8302400			39014	454	32207	32229	42328;42329	42329		9			-0.04368464599292565
MVNSSGRA	8	Oxidation (M)	_M(Oxidation (M))VNSSGRA_		M(1)VNSSGRA		M(61)VNSSGRA	0	0	1		PTPRT|p.A752Gfs*77|1|0.29|ENSG00000196090|chr20:42248744-42248745|-/GGGAGCAGGGGAGGAGACAGGGTCTGGCTAGAAC|frameshift_variant;PTPRT|p.S834Ffs*21|1|0.38|ENSG00000196090|chr20:42161522-42161534|GCTCCCCGCGGCT/-|frameshift_variant;chr20:42199388-42248687|137|16.46|0.87|4.24|-|ENST00000373201|PTPRT,PTPRT;chr20:42161539-42199240|139|14.26|0.81|4.13|-|ENST00000373190|PTPRT,PTPRT;ENSG00000196090|ENST00000373187|PTPRT;chr20:42116098-42118403|125|12.59|0.57|4.46|-|ENST00000373184|PTPRT,PTPRT;chr20:42115315-42116039|128|12.88|0.61|4.4|-|ENST00000373184|PTPRT,PTPRT;nc|ENSG00000196090|O14522-1|PTPRT	PTPRT|p.A752Gfs*77|1|0.29|ENSG00000196090|chr20:42248744-42248745|-/GGGAGCAGGGGAGGAGACAGGGTCTGGCTAGAAC|frameshift_variant	PTPRT|p.A752Gfs*77|1|0.29|ENSG00000196090|chr20:42248744-42248745|-/GGGAGCAGGGGAGGAGACAGGGTCTGGCTAGAAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	419.19805908203125	2	419.197802	836.381051	-0.68643	-0.00028775	1.629	0.00068287	0.94257	0.00039512	419.1983518447222	49.852	2.9249	47.058	46.686	49.611	-2.794					110	58	3	0	0	0	0.61436	3	3189	3189;3195;3216		60.972	14.206	1	731490			39015	454	32207	32229	42330;42331;42332	42330		9			-0.04368464599292565
MVNSSGRA	8	Oxidation (M)	_M(Oxidation (M))VNSSGRA_		M(1)VNSSGRA		M(61)VNSSGRA	0	0	1		PTPRT|p.A752Gfs*77|1|0.29|ENSG00000196090|chr20:42248744-42248745|-/GGGAGCAGGGGAGGAGACAGGGTCTGGCTAGAAC|frameshift_variant;PTPRT|p.S834Ffs*21|1|0.38|ENSG00000196090|chr20:42161522-42161534|GCTCCCCGCGGCT/-|frameshift_variant;chr20:42199388-42248687|137|16.46|0.87|4.24|-|ENST00000373201|PTPRT,PTPRT;chr20:42161539-42199240|139|14.26|0.81|4.13|-|ENST00000373190|PTPRT,PTPRT;ENSG00000196090|ENST00000373187|PTPRT;chr20:42116098-42118403|125|12.59|0.57|4.46|-|ENST00000373184|PTPRT,PTPRT;chr20:42115315-42116039|128|12.88|0.61|4.4|-|ENST00000373184|PTPRT,PTPRT;nc|ENSG00000196090|O14522-1|PTPRT	PTPRT|p.A752Gfs*77|1|0.29|ENSG00000196090|chr20:42248744-42248745|-/GGGAGCAGGGGAGGAGACAGGGTCTGGCTAGAAC|frameshift_variant	PTPRT|p.A752Gfs*77|1|0.29|ENSG00000196090|chr20:42248744-42248745|-/GGGAGCAGGGGAGGAGACAGGGTCTGGCTAGAAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	419.1982421875	2	419.197802	836.381051	-2.054	-0.00086101	2.6429	0.0011079	0.58893	0.00024688	419.1988772983762	49.988	4.5261	46.846	46.558	51.084	-3.1416					203	88	5	0	0	0	0.61436	2	2875	2875;2901		60.972	6.2073	1	4398500			39016	454	32207	32229	42333;42334	42333		9			-0.04368464599292565
MVNSSNYLDRG	11	Unmodified	_MVNSSNYLDRG_					0	0	0		nc|ENSG00000121690|Q96QD5-2|DEPDC7;ENSG00000121690|ENST00000241051|DEPDC7	nc|ENSG00000121690|Q96QD5-2|DEPDC7	nc|ENSG00000121690|Q96QD5-2|DEPDC7	MULTI-MSMS	OvCa99_classI_Rep5	1	628.2900390625	2	628.290419	1254.56629	0.93461	0.0005872	-1.7978	-0.0011296	-0.86323	-0.00054236	628.2891427745932	132.21	1.2294	132.21	131.85	133.08	0					54	25	4	0	0	0	0.56391	1	15364	15364		47.96	1.5027	1	1196500			39017	3494	32208	32230	42335	42335					-0.05081526590379326
MVPAPSTPIQP	11	Unmodified	_MVPAPSTPIQP_					0	0	0			REV__ENSG00000101825|ENST00000217939|MXRA5	REV__ENSG00000101825|ENST00000217939|MXRA5	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.8216552734375	2	569.302267	1136.58998	2.6437	0.0015051	1.6799	0.00095635	4.3235	0.0024614	569.3048323955627	102.72	0.17204	102.72	102.63	102.81	0					5	3	2	0	0	0	0.025861	1	11459	11459		23.523	0	1	58781	+		39018	17519	32209	32231	42336	42336					0.027149389141186475
MVPDIVQIN	9	Unmodified	_MVPDIVQIN_					0	0	0		ENST00000444527.2_1_8:56365111-56365366:-|nuORF	ENST00000444527.2_1_8:56365111-56365366:-|nuORF	ENST00000444527.2_1_8:56365111-56365366:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.8201904296875	2	514.775885	1027.53722	1.4334	0.00073788	1.0014	0.00051551	2.4348	0.0012534	515.275827483169	118.84	0.23784	118.84	118.72	118.96	0					6	4	2	0	0	0	0.027418	1	13644	13644		58.782	29.632	1	22135			39019	11957	32210	32232	42337	42337					0.024549808513029348
MVPIQTTLN	9	Unmodified	_MVPIQTTLN_					0	0	0			REV__tr|A0A553SI02|A0A553SI02_NIACIMurR/RpiRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_13930PE=4SV=1	REV__tr|A0A553SI02|A0A553SI02_NIACIMurR/RpiRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_13930PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.7766418457031	2	508.775885	1015.53722	-0.13736	-6.9884E-05	0.08059	4.1002E-05	-0.056767	-2.8881E-05	508.77580932250646	83.619	1.3316	80.956	80.583	81.914	-2.6629					63	27	4	0	0	0	0.49652	1	6958	6958		42.864	7.246	1	464040	+		39020	29857	32211	32233	42338	42338					0.03006980851296248
MVPKCRARV	9	Carbamidomethyl (C),Oxidation (M)	_M(Oxidation (M))VPKC(Carbamidomethyl (C))RARV_	MVPKC(1)RARV	M(1)VPKCRARV	MVPKC(58)RARV	M(58)VPKCRARV	0	1	1		ENST00000433206.6_1_17:37075690-37076056:+|nuORF	ENST00000433206.6_1_17:37075690-37076056:+|nuORF	ENST00000433206.6_1_17:37075690-37076056:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	566.8099975585938	2	566.807528	1131.6005	-1.2191	-0.00069098	4.019	0.002278	2.7999	0.001587	566.8096697785414	54.761	1.297	51.947	51.424	52.721	-2.8139					80	25	4	0	0	0	0.34496	1	3779	3779		57.811	17.033	1	651890			39021	11825	32212	32234	42339	42339	128	325			0.039966430875438164
MVPKVRLL	8	Oxidation (M)	_M(Oxidation (M))VPKVRLL_		M(1)VPKVRLL		M(55)VPKVRLL	0	0	1		ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C	ENSG00000009335|ENST00000348165|UBE3C	ENSG00000009335|ENST00000348165|UBE3C	MULTI-MSMS	OvCa9_classI_Rep2	2	486.3055114746094	2	486.307155	970.599758	-1.0237	-0.00049782	-2.7767	-0.0013503	-3.8003	-0.0018481	486.3057082440577	120.4	1.6293	120.23	119.94	121.57	-0.17138					88	32	4	0	0	0	0.64377	1	11613	11613		54.765	10.234	1	594410			39022	928	32213	32235	42340	42340		29			0.11328171710169954
MVPLTQFYP	9	Unmodified	_MVPLTQFYP_					0	0	0			REV__BPI|p.P244Rfs*6|1|0.16|ENSG00000101425|chr20:38320236-38320237|-/G|frameshift_variant	REV__BPI|p.P244Rfs*6|1|0.16|ENSG00000101425|chr20:38320236-38320237|-/G|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	548.28369140625	2	548.280803	1094.54705	2.4719	0.0013553	2.9981	0.0016438	5.47	0.0029991	548.2819981226179	94.324	0.38108	94.324	94.136	94.517	0					18	8	4	0	0	0	0.56889	1	10272	10272		35.618	0.41757	1	1384300	+		39023	15706	32214	32236	42341	42341					0.0035616885668332543
MVPSSPSPPPP	11	Unmodified	_MVPSSPSPPPP_					0	0	0		ENST00000548284.1_1_12:53609348-53613842:-|nuORF;ENST00000550265.5_1_12:53608380-53613977:-|nuORF;nc|ENSG00000172819|P13631-3|RARG;nc|ENSG00000172819|P13631-2|RARG;ENSG00000172819|ENST00000425354|RARG	ENST00000548284.1_1_12:53609348-53613842:-|nuORF	ENST00000548284.1_1_12:53609348-53613842:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.3036499023438	2	546.773342	1091.53213	-0.15195	-8.3082E-05	-1.4248	-0.00077905	-1.5768	-0.00086213	546.7728222437182	115.79	0.59357	114.39	114.17	114.76	-1.3977					18	11	2	0	0	0	0.025377	1	10767	10767		56.721	8.8055	1	24472			39024	7321	32215	32237	42342	42342					-0.009973230113018872
MVQAYFIY	8	Unmodified	_MVQAYFIY_					0	0	0		tr|A0A7D6ZK53|A0A7D6ZK53_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11185PE=3SV=1	tr|A0A7D6ZK53|A0A7D6ZK53_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11185PE=3SV=1	tr|A0A7D6ZK53|A0A7D6ZK53_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11185PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	517.7534790039062	2	517.754421	1033.49429	0.13224	6.8467E-05	-1.0323	-0.00053449	-0.90009	-0.00046603	517.7536919411586	99.533	2.2055	97.848	97.009	99.214	-1.685					97	43	4	0	0	0	0.64377	1	6728	6728		54.765	3.4292	1	863100			39025	35657	32216	32238	42343	42343					-0.02111789206105641
MVQTIFAPPN	10	Unmodified	_MVQTIFAPPN_					0	0	0		ENST00000577901.5_1_18:9914253-9936249:+|nuORF;ENSG00000101558|ENST00000400000|VAPA;nc|ENSG00000101558|Q9P0L0-2|VAPA	ENST00000577901.5_1_18:9914253-9936249:+|nuORF	ENST00000577901.5_1_18:9914253-9936249:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	559.2907104492188	2	559.289159	1116.56377	0.58769	0.00032869	1.4057	0.00078617	1.9934	0.0011149	559.2898256718978	123.34	1.5779	123.12	122.71	124.29	-0.21803					88	31	4	0	0	0	0.22511	3	11963	11941;11950;11963		90.601	6.9538	1	476500			39026	2186	32217	32239	42344;42345;42346	42346					0.010146697426307583
MVQTIFAPPN	10	Unmodified	_MVQTIFAPPN_					0	0	0		ENST00000577901.5_1_18:9914253-9936249:+|nuORF;ENSG00000101558|ENST00000400000|VAPA;nc|ENSG00000101558|Q9P0L0-2|VAPA	ENST00000577901.5_1_18:9914253-9936249:+|nuORF	ENST00000577901.5_1_18:9914253-9936249:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	559.2910766601562	2	559.289159	1116.56377	1.0679	0.00059727	1.3266	0.00074194	2.3945	0.0013392	559.289786703432	123.89	1.2949	122.85	122.51	123.81	-1.0377					64	24	4	0	0	0	0.18931	2	9575	9575;9600		96.034	5.4329	1	395230			39027	2186	32217	32239	42347;42348	42347					0.010146697426307583
MVQTIFAPPN	10	Unmodified	_MVQTIFAPPN_					0	0	0		ENST00000577901.5_1_18:9914253-9936249:+|nuORF;ENSG00000101558|ENST00000400000|VAPA;nc|ENSG00000101558|Q9P0L0-2|VAPA	ENST00000577901.5_1_18:9914253-9936249:+|nuORF	ENST00000577901.5_1_18:9914253-9936249:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.2908935546875	2	559.289159	1116.56377	0.084443	4.7228E-05	2.1968	0.0012286	2.2812	0.0012759	559.2903298191266	124.28	1.4439	122.89	122.57	124.01	-1.3908					73	27	4	0	0	0	0.12738	4	11778	11769;11778;11790;11803		106.68	10.649	1	497980			39028	2186	32217	32239	42349;42350;42351;42352	42350					0.010146697426307583
MVRARPLRA	9	Unmodified	_MVRARPLRA_					0	0	0			REV__ENST00000420902.1_1_22:50008608-50009004:-|nuORF	REV__ENST00000420902.1_1_22:50008608-50009004:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	535.3256225585938	2	535.324202	1068.63385	1.8534	0.00099216	1.2698	0.00067977	3.1232	0.0016719	535.3245798539286	129.21	0.70108	129.21	128.88	129.59	0					33	14	3	0	0	0	0.61208	1	14966	14966		30.504	2.6214	1	294650	+		39029	25596	32218	32240	42353	42353					0.10228012921766094
MVRDSPDK	8	Unmodified	_MVRDSPDK_					0	0	0			REV__ENSG00000023608|ENST00000216294|SNAPC1	REV__ENSG00000023608|ENST00000216294|SNAPC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	474.2696838378906	2	474.234384	946.454216	-0.8569	-0.00040637	0.60971	0.00028915	-0.24719	-0.00011723	474.2344336373207	88.664	1.0957	86.061	85.629	86.725	-2.6027					39	21	3	0	0	0	0.028476	1	7558	7558		60.294	0	1	53235	+		39030	16559	32219	32241	42354	42354					-0.021153358766923702
MVRHKILFPGR	11	Unmodified	_MVRHKILFPGR_					0	0	0		nc|ENSG00000109339|P53779-2|MAPK10;nc|ENSG00000109339|P53779-3|MAPK10;ENSG00000109339|ENST00000641462|MAPK10;ENST00000508262.2_2_4:86938383-87019884:-|nuORF	nc|ENSG00000109339|P53779-2|MAPK10	nc|ENSG00000109339|P53779-2|MAPK10	MULTI-MSMS	OvCa9_classI_Rep3	3	451.9324951171875	3	451.936053	1352.78633	-6.053	-0.0027356	-1.3931	-0.00062959	-7.4461	-0.0033652	451.9353451119314	157.15	3.3777	155.98	154.84	158.22	-1.1707					159	80	3	0	0	0	0.70315	1	13542	13542		28.577	13.883	1	79362			39031	2710	32220	32242	42355	42355					0.12404788598496452
MVRIAMNV	8	Unmodified	_MVRIAMNV_					0	0	0			REV__ENST00000468414.1_1_3:127336783-127340613:+|nuORF	REV__ENST00000468414.1_1_3:127336783-127340613:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.7750549316406	2	467.254065	932.493578	-0.45359	-0.00021194	-1.2133	-0.00056694	-1.6669	-0.00077889	467.25402132311285	66.445	0.8793	62.955	62.612	63.492	-3.4902					51	17	4	0	0	0	0.028476	1	4798	4798		24.203	7.7296	1	94965	+		39032	16932	32221	32243	42356	42356					0.0246309287317672
MVRIAMNV	8	Unmodified	_MVRIAMNV_					0	0	0			REV__ENST00000468414.1_1_3:127336783-127340613:+|nuORF	REV__ENST00000468414.1_1_3:127336783-127340613:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	467.254065	932.493578	1.1074	0.00051744	-3.7944	-0.0017729	-2.687	-0.0012555	467.2525515646132	65.763	0.89631	63.067	62.72	63.617	-2.6958	0.055859	-0.0013457	NaN	24.203	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21982	+		39033	16932	32221	32243							0.0246309287317672
MVRLIIVY	8	Unmodified	_MVRLIIVY_					0	0	0		tr|A0A553SQG7|A0A553SQG7_NIACIProteinPsiEOS=NialliacirculansOX=1397GN=psiEPE=3SV=1	tr|A0A553SQG7|A0A553SQG7_NIACIProteinPsiEOS=NialliacirculansOX=1397GN=psiEPE=3SV=1	tr|A0A553SQG7|A0A553SQG7_NIACIProteinPsiEOS=NialliacirculansOX=1397GN=psiEPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	503.2832946777344	2	503.809531	1005.60451	-2.4307	-0.0012246	-3.4119	-0.0017189	-5.8426	-0.0029436	504.30945666296867	37.788	0.24496	35.078	34.977	35.222	-2.7097					6	4	2	0	0	0	0.028476	1	1735	1735		28.254	4.0515	1	5949.1			39034	34159	32222	32244	42357	42357					0.10193055852914767
MVRLLSRS	8	Unmodified	_MVRLLSRS_					0	0	0			REV__ENST00000510710.3_1_17:48263464-48264214:-|nuORF	REV__ENST00000510710.3_1_17:48263464-48264214:-|nuORF	MSMS	OvCa9_classI_Rep2	2	481.28399658203125	2	481.284211	960.55387	NaN	NaN	NaN	NaN	NaN	NaN	NaN	158.24	1	158.01	157.51	158.51	-0.22696								0	0	0	0.30129	1	16075	16075		18.324	4.5491	1		+		39035	26945	32223	32245	42358	42358					0.07201526527910573
MVRMTIRSKDI	11	Unmodified	_MVRMTIRSKDI_					0	0	0		HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|18|1|sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|18|1|sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|18|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.59918212890625	3	450.58458	1348.73191	0.6979	0.00031446	2.0044	0.00090315	2.7023	0.0012176	450.5854345767808	75.899	0.1459	72.96	72.839	72.985	-2.9389					4	2	2	0	0	0	0.025767	1	5990	5990		30.569	0	1	7068.5			39036	14397	32224	32246	42359	42359					0.07149408664804469
MVRRVFKEI	9	Unmodified	_MVRRVFKEI_					0	0	0			REV__ENSG00000153066|ENST00000283033|TXNDC11	REV__ENSG00000153066|ENST00000283033|TXNDC11	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3419799804688	2	589.347343	1176.68013	-3.0463	-0.0017953	-4.3757	-0.0025788	-7.422	-0.0043741	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.61208	1	15064	15064		30.504	2.6214	1	272220	+		39037	20319	32225	32247	42360	42360					0.09886033033194508
MVRRYLAR	8	Unmodified	_MVRRYLAR_					0	0	0			REV__ENSG00000083812|ENST00000196482|ZNF324	REV__ENSG00000083812|ENST00000196482|ZNF324	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.7861328125	2	532.810928	1063.6073	-1.6784	-0.00089429	-3.5409	-0.0018866	-5.2193	-0.0027809	533.3112955254373	73.979	0.52058	70.748	70.386	70.906	-3.2308					17	10	2	0	0	0	0.028476	1	5773	5773		31.955	13.693	1	21293	+		39038	17110	32226	32248	42361	42361					0.07804324030416865
MVRSKKHN	8	Unmodified	_MVRSKKHN_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1;REV__nc|ENSG00000151914|Q03001|DST;REV__nc|ENSG00000127603|O94854|MACF1	REV__nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.82806396484375	2	500.27946	998.544368	-0.19551	-9.7808E-05	-4.2698	-0.0021361	-4.4653	-0.0022339	500.2771338128258	71.133	1.0741	71.133	70.761	71.835	0					45	26	3	0	0	0	0.028476	1	6917	6917		45.952	1.8352	1	5343600	+		39039	20262;18823;28838	32227	32249	42362	42362					0.04503758242390177
MVRTHKPR	8	Unmodified	_MVRTHKPR_					0	0	0			REV__ACTR1B|p.M45T|1|0.06|ENSG00000115073|chr2:97660626-97660626|A/G|missense_variant	REV__ACTR1B|p.M45T|1|0.06|ENSG00000115073|chr2:97660626-97660626|A/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.8142395019531	2	512.795278	1023.576	-0.51046	-0.00026176	1.1044	0.00056633	0.59393	0.00030457	513.2960119149601	39.265	0.13552	39.265	39.196	39.332	0					4	2	2	0	0	0	0.028476	1	2296	2296		21.96	9.753	1	28099	+		39040	15560	32228	32250	42363	42363					0.06515750996334191
MVRWYLAI	8	Oxidation (M)	_M(Oxidation (M))VRWYLAI_		M(1)VRWYLAI		M(55)VRWYLAI	0	0	1		nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;DNAH10|p.N3904Vfs*37|1|0.07|ENSG00000197653|chr12:123926777-123926778|-/GGTACAGAGAAGTCCCTGCC|frameshift_variant;DNAH10|p.R2161Nfs*35|1|0.03|ENSG00000197653|chr12:123861095-123861096|-/TAACAGTGAAGGGAAG|frameshift_variant;nc|ENSG00000197653|Q8IVF4-2|DNAH10;DNAH10|p.I1041Lfs*26|1|0.09|ENSG00000197653|chr12:123813493-123813493|A/-|frameshift_variant;ENST00000467219.5_1_12:124265674-124298205:+|nuORF	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-MSMS	OvCa99_classI_Rep5	1	534.2930297851562	2	534.288963	1066.56337	2.1389	0.0011428	2.7958	0.0014938	4.9347	0.0026366	534.2903671315008	98.005	0.89976	98.005	97.696	98.596	0					41	20	3	0	0	0	0.64377	1	10771	10771		54.765	6.8491	1	3179100			39041	8733	32229	32251	42364	42364		261			0.0327529481342026
MVSALRGAPLI	11	Unmodified	_MVSALRGAPLI_					0	0	0		ENSG00000141316|ENST00000269053|SPACA3	ENSG00000141316|ENST00000269053|SPACA3	ENSG00000141316|ENST00000269053|SPACA3	MULTI-MSMS	OvCa9_classI_Rep2	2	564.3330078125	2	564.333901	1126.65325	-1.0056	-0.0005675	-2.5092	-0.001416	-3.5148	-0.0019835	564.3321744807142	117.4	1.5874	117.27	116.91	118.5	-0.12869					87	31	4	0	0	0	0.68021	1	11247	11247		36.447	0	1	307740			39042	4905	32230	32252	42365	42365					0.09498924422018717
MVSFPFHW	8	Unmodified	_MVSFPFHW_					0	0	0		ENST00000523063.5_1_8:33653913-33865452:+|nuORF	ENST00000523063.5_1_8:33653913-33865452:+|nuORF	ENST00000523063.5_1_8:33653913-33865452:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.8256225585938	2	525.746931	1049.47931	-4.4317	-0.0023299	-3.8028	-0.0019993	-8.2345	-0.0043292	526.2467317260902	156.14	0.32843	155.91	155.7	156.03	-0.22697					16	11	2	0	0	0	0.028476	1	15893	15893		15.636	0	1	8188.2			39043	13146	32231	32253	42366	42366					-0.04345236283461418
MVSLKSGRK	9	Unmodified	_MVSLKSGRK_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.26531982421875	2	503.297319	1004.58008	-0.43017	-0.00021651	-0.42887	-0.00021585	-0.85904	-0.00043235	503.2965729268525	60.017	0.51213	60.017	59.726	60.238	0					16	12	2	0	0	0	0.027353	1	5204	5204		82.241	2.3013	1	188830			39044	15005	32232	32254	42367	42367					0.07797795699400467
MVSPDNEKEF	10	Unmodified	_MVSPDNEKEF_					0	0	0			REV__nc|ENSG00000278540|Q13085-3|ACACA	REV__nc|ENSG00000278540|Q13085-3|ACACA	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.7918090820312	2	598.268621	1194.52269	1.9017	0.0011377	3.1333	0.0018745	5.035	0.0030123	598.2703601710527	110.19	0.54142	110.19	109.86	110.4	0					23	11	3	0	0	0	0.026494	1	12509	12509		77.318	11.514	1	434640	+		39045	23642	32233	32255	42368	42368					-0.06679136087495863
MVSRMAKPE	9	Unmodified	_MVSRMAKPE_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61719906-61720176:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.3155517578125	2	524.767537	1047.52052	-0.57677	-0.00030267	-1.7506	-0.00091868	-2.3274	-0.0012213	524.7669405788379	56.313	1.3678	53.018	52.718	54.086	-3.2944					54	26	4	0	0	0	0.027462	1	3599	3599		29.15	0.89528	1	152390			39046	1685	32234	32256	42369	42369					-0.001338433062983313
MVSRMAKPE	9	Unmodified	_MVSRMAKPE_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000428210.5_1_2:61719906-61720176:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	524.767537	1047.52052	-0.81753	-0.00042901	-1.3942	-0.00073166	-2.2118	-0.0011607	524.7668187888678	56.153	0.84207	53.349	52.928	53.77	-2.804	0.16543	0.00010256	NaN	56.721	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33065			39047	1685	32234	32256							-0.001338433062983313
MVSRRVHDV	9	Unmodified	_MVSRRVHDV_					0	0	0			REV__nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	REV__nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.280517578125	2	549.795475	1097.5764	-0.21556	-0.00011852	-1.8238	-0.0010027	-2.0394	-0.0011212	549.7945505359903	116.48	0.67001	115.12	114.94	115.61	-1.3645					21	12	2	0	0	0	0.027462	1	10860	10860		39.253	13.679	1	39030	+		39048	20638	32235	32257	42370	42370					0.031511259255239565
MVSRRVHDV	9	Unmodified	_MVSRRVHDV_					0	0	0			REV__nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	REV__nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	MULTI-MATCH	OvCa9_classI_Rep3	3		2	549.795475	1097.5764	-1.0708	-0.00058872	-0.59177	-0.00032536	-1.6626	-0.00091408	549.7952649452582	116.23	0.79002	115.19	114.9	115.69	-1.0414	0.034816	0.00081265	NaN	39.253	27	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28279	+		39049	20638	32235	32257							0.031511259255239565
MVSRVIKTD	9	Unmodified	_MVSRVIKTD_					0	0	0		tr|A0A7D6VYC9|A0A7D6VYC9_9CLOTPeptidoglycanDD-metalloendopeptidasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05955PE=4SV=1	tr|A0A7D6VYC9|A0A7D6VYC9_9CLOTPeptidoglycanDD-metalloendopeptidasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05955PE=4SV=1	tr|A0A7D6VYC9|A0A7D6VYC9_9CLOTPeptidoglycanDD-metalloendopeptidasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05955PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.3155517578125	2	524.794609	1047.57467	-1.0249	-0.00053786	-2.7088	-0.0014216	-3.7337	-0.0019594	524.7926645016687	55.865	0.70887	52.571	52.361	53.07	-3.2944					23	13	2	0	0	0	0.027462	1	3599	3599		39.253	7.298	1	68980			39050	35328	32236	32258	42371	42371					0.05278072116925614
MVSVWLILE	9	Unmodified	_MVSVWLILE_					0	0	0		ENSG00000198822|ENST00000361669|GRM3	ENSG00000198822|ENST00000361669|GRM3	ENSG00000198822|ENST00000361669|GRM3	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.822998046875	2	545.304278	1088.594	0.96448	0.00052593	-2.2102	-0.0012052	-1.2457	-0.00067929	545.3021345628345	101.87	1.2413	101.87	101.65	102.89	0					47	28	3	0	0	0	0.027462	1	11476	11476		30.504	1.3541	1	567150			39051	8882	32237	32259	42372	42372					0.053250284078103505
MVTIGTSQSV	10	Oxidation (M)	_M(Oxidation (M))VTIGTSQSV_		M(1)VTIGTSQSV		M(46)VTIGTSQSV	0	0	1			REV__AluJr4_dup16917|chr16:69374357-69374684:+|2.433971777808144|0.0235263945213815|6.69|429.0|21|3|anti-sense	REV__AluJr4_dup16917|chr16:69374357-69374684:+|2.433971777808144|0.0235263945213815|6.69|429.0|21|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	519.7656860351562	2	519.760432	1037.50631	0.55719	0.0002896	4.2012	0.0021836	4.7584	0.0024732	519.7625434399313	154.37	0.85341	154.37	154.03	154.88	0					29	16	2	0	0	0	0.5635	1	18094	18094		46.457	7.6506	1	149250	+		39052	15600	32238	32260	42373	42373		381			-0.010942172535806094
MVTPLPVIL	9	Unmodified	_MVTPLPVIL_					0	0	0		ENSG00000187758|ENST00000209668|ADH1A	ENSG00000187758|ENST00000209668|ADH1A	ENSG00000187758|ENST00000209668|ADH1A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.78265380859375	2	491.803914	981.593275	1.497	0.00073624	0.089739	4.4134E-05	1.5868	0.00078037	491.80369796711045	86.494	0.83592	83.867	83.613	84.448	-2.6269					27	16	2	0	0	0	0.027456	1	7293	7293		38.806	21.338	1	62957			39053	8430	32239	32261	42374	42374					0.10174233758766604
MVTPLPVIL	9	Unmodified	_MVTPLPVIL_					0	0	0		ENSG00000187758|ENST00000209668|ADH1A	ENSG00000187758|ENST00000209668|ADH1A	ENSG00000187758|ENST00000209668|ADH1A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	491.803914	981.593275	-1.3881	-0.00068266	4.5744	0.0022497	3.1863	0.001567	491.8060215959532	86.109	1.0039	83.889	83.636	84.64	-2.2204	0.036132	0.0010415	NaN	38.806	33	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76567			39054	8430	32239	32261							0.10174233758766604
MVTTTALYL	9	Oxidation (M)	_M(Oxidation (M))VTTTALYL_		M(1)VTTTALYL		M(77)VTTTALYL	0	0	1			REV__tr|A0A7D6ZZM0|A0A7D6ZZM0_9CLOTFtsW/RodA/SpoVEfamilycellcycleproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06670PE=4SV=1	REV__tr|A0A7D6ZZM0|A0A7D6ZZM0_9CLOTFtsW/RodA/SpoVEfamilycellcycleproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06670PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	514.7700805664062	2	514.770268	1027.52598	1.6812	0.00086542	-2.578	-0.0013271	-0.89684	-0.00046167	514.7687608838663	136.13	0.85091	136.13	135.83	136.68	0					32	17	3	0	0	0	0.19716	2	15860	15860;15885		76.847	14.342	1	307420	+		39055	32414	32240	32262	42375;42376	42375		718			0.013321587571454074
MVTYSLSLLK	10	Unmodified	_MVTYSLSLLK_					0	0	0			REV__ENSG00000170790|ENST00000641461|OR10A2	REV__ENSG00000170790|ENST00000641461|OR10A2	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.7902221679688	2	577.828117	1153.64168	0.57583	0.00033273	-3.1578	-0.0018247	-2.582	-0.0014919	577.8260950875543	81.039	0.8843	81.039	80.487	81.372	0					20	12	3	0	0	0	0.026493	1	8263	8263		45.972	0	1	602540	+		39056	21562	32241	32263	42377	42377					0.07100682608029274
MVVAFKGL	8	Unmodified	_MVVAFKGL_					0	0	0			REV__ENSG00000165819|ENST00000298717|METTL3	REV__ENSG00000165819|ENST00000298717|METTL3	MULTI-SECPEP	OvCa99_classI_Rep5	1	433.6764221191406	2	432.754224	863.493896	2.9711	0.0012857	-0.26142	-0.00011313	2.7096	0.0011726	432.75395478758946	94.396	0.85445	94.396	94.094	94.949	0					26	19	2	0	0	0	0.028476	1	10297	10297		14.664	0.88877	1	393930	+		39057	21124	32242	32264	42378	42378					0.05668835864696575
MVVFILVILA	10	Unmodified	_MVVFILVILA_					0	0	0		nc|ENSG00000140798|Q96J65|ABCC12;ENSG00000140798|ENST00000311303|ABCC12;nc|ENSG00000140798|Q96J65-5|ABCC12;nc|ENSG00000140798|Q96J65-2|ABCC12	nc|ENSG00000140798|Q96J65|ABCC12	nc|ENSG00000140798|Q96J65|ABCC12	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.3602294921875	2	559.356314	1116.69807	0.44355	0.0002481	2.6156	0.001463	3.0591	0.0017112	559.3576984469746	99.145	1.8504	96.82	96.484	98.335	-2.3253					92	35	4	0	0	0	0.5794	1	8824	8824		44.531	0	1	566800			39058	4874	32243	32265	42379	42379					0.1443935523534492
MVVIVVLAF	9	Unmodified	_MVVIVVLAF_					0	0	0		nc|ENSG00000166734|Q6P4E1-5|GOLM2	nc|ENSG00000166734|Q6P4E1-5|GOLM2	nc|ENSG00000166734|Q6P4E1-5|GOLM2	MULTI-MSMS	OvCa9_classI_Rep3	3	495.8064880371094	2	495.806457	989.598361	-3.0687	-0.0015215	2.4966	0.0012378	-0.57207	-0.00028364	495.80768519755566	143.85	1.3844	142.86	142.49	143.87	-0.9903					67	27	4	0	0	0	0.68641	1	11989	11989		21.702	1.2205	1	103180			39059	15158	32244	32266	42380	42380					0.10314537621388808
MVVKVGKHV	9	Unmodified	_MVVKVGKHV_					0	0	0			REV__ENSG00000137161|ENST00000372836|CNPY3	REV__ENSG00000137161|ENST00000372836|CNPY3	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.8037414550781	2	498.80478	995.595007	-0.82323	-0.00041063	-1.8852	-0.00094037	-2.7085	-0.001351	498.80368788803946	87.251	1.3541	84.624	84.25	85.605	-2.6269					71	26	4	0	0	0	0.48324	1	7414	7414		44.117	15.863	1	432250	+		39060	19437	32245	32267	42381	42381					0.09703287567390362
MVVKVGKHV	9	Unmodified	_MVVKVGKHV_					0	0	0			REV__ENSG00000137161|ENST00000372836|CNPY3	REV__ENSG00000137161|ENST00000372836|CNPY3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	498.80478	995.595007	-0.84306	-0.00042052	-1.9637	-0.00097951	-2.8068	-0.0014	498.8036752890848	85.972	1.4365	84.481	84.146	85.583	-1.4906	-0.10152	-0.00031458	NaN	44.117	70	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	321100	+		39061	19437	32245	32267							0.09703287567390362
MVVKVGKHV	9	Unmodified	_MVVKVGKHV_					0	0	0			REV__ENSG00000137161|ENST00000372836|CNPY3	REV__ENSG00000137161|ENST00000372836|CNPY3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	498.80478	995.595007	-1.2798	-0.00063839	-1.0547	-0.00052609	-2.3346	-0.0011645	498.80406492332554	86.82	1.4782	84.643	84.33	85.809	-2.1768	0.060457	0.00059225	NaN	44.117	76	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405890	+		39062	19437	32245	32267							0.09703287567390362
MVVKVGKHV	9	Unmodified	_MVVKVGKHV_					0	0	0			REV__ENSG00000137161|ENST00000372836|CNPY3	REV__ENSG00000137161|ENST00000372836|CNPY3	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	498.80478	995.595007	-0.82323	-0.00041063	-1.8852	-0.00094037	-2.7085	-0.001351	498.80368788803946	87.251	1.3541	84.624	84.25	85.605	-2.6269	0.041059	-0.00023629	NaN	44.117	71	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	432250	+		39063	19437	32245	32267							0.09703287567390362
MVVLFSLNP	9	Oxidation (M)	_M(Oxidation (M))VVLFSLNP_		M(1)VVLFSLNP		M(49)VVLFSLNP	0	0	1		ENST00000502976.5_1_3:128889209-128889263:-|nuORF	ENST00000502976.5_1_3:128889209-128889263:-|nuORF	ENST00000502976.5_1_3:128889209-128889263:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	518.2816772460938	2	518.280803	1034.54705	0.2673	0.00013853	2.8893	0.0014975	3.1566	0.001636	518.2822567889135	66.733	2.873	64.037	63.567	66.44	-2.6958					124	57	4	0	0	0	0.42676	1	5166	5166		49.442	6.9671	1	1284900			39064	12860	32246	32268	42382	42382		342			0.03116168856695367
MVVLIPVSW	9	Unmodified	_MVVLIPVSW_					0	0	0		ENSG00000156284|ENST00000399899|CLDN8	ENSG00000156284|ENST00000399899|CLDN8	ENSG00000156284|ENST00000399899|CLDN8	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.3023681640625	2	522.301539	1042.58852	-0.56065	-0.00029283	2.7267	0.0014241	2.166	0.0011313	522.3027953700879	128.07	1.1274	126.64	126.34	127.47	-1.4357					64	21	4	0	0	0	0.39645	1	12224	12224		52.299	1.1065	1	436450			39065	5833	32247	32269	42383	42383					0.06893349615984334
MVVLLIVEA	9	Unmodified	_MVVLLIVEA_					0	0	0			REV__ENSG00000181958|ENST00000641526|OR4A15	REV__ENSG00000181958|ENST00000641526|OR4A15	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.31805419921875	2	493.801371	985.58819	-0.40011	-0.00019757	0.89434	0.00044162	0.49423	0.00024405	493.8010543508367	103.53	0.24715	102.85	102.72	102.97	-0.68459					7	4	2	0	0	0	0.027425	1	9573	9573		60.294	0	1	17225	+		39066	22254	32248	32270	42384	42384					0.09481929896151087
MVVNASNKL	9	Unmodified	_MVVNASNKL_					0	0	0		tr|A0A7D7A0L1|A0A7D7A0L1_9CLOTDAK2domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10460PE=4SV=1	tr|A0A7D7A0L1|A0A7D7A0L1_9CLOTDAK2domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10460PE=4SV=1	tr|A0A7D7A0L1|A0A7D7A0L1_9CLOTDAK2domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10460PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	488.2710876464844	2	488.268227	974.521901	0.077218	3.7703E-05	0.48296	0.00023581	0.56017	0.00027352	488.26841802255313	72.811	1.8195	72.811	72.125	73.945	0					107	45	4	0	0	0	0.16562	1	7091	7091		82.241	8.2658	1	17057000			39067	35998	32249	32271	42385	42385					0.03362114054118592
MVVQEMNH	8	Unmodified	_MVVQEMNH_					0	0	0			REV__ENSG00000151365|ENST00000281030|THRSP	REV__ENSG00000151365|ENST00000281030|THRSP	MULTI-MSMS	OvCa99_classI_Rep5	1	494.2214660644531	2	494.222962	986.431372	-0.38082	-0.00018821	-0.70874	-0.00035028	-1.0896	-0.00053848	494.2224985748198	35.73	0.83094	35.73	35.52	36.351	0					41	17	4	0	0	0	0.59148	1	1818	1818		65.803	0	1	865900	+		39068	20226	32250	32272	42386	42386					-0.06238678265822273
MVVTSYRK	8	Unmodified	_MVVTSYRK_					0	0	0			REV__ENSG00000131037|ENST00000201647|EPS8L1	REV__ENSG00000131037|ENST00000201647|EPS8L1	MULTI-MSMS	OvCa99_classI_Rep5	1	492.2707214355469	2	492.27077	982.526987	1.9556	0.00096269	-2.895	-0.0014251	-0.93936	-0.00046242	492.2692604120554	82.329	0.55099	82.329	82.101	82.652	0					22	12	2	0	0	0	0.60331	1	8522	8522		63.306	5.495	1	1226600	+		39069	18993	32251	32273	42387	42387					0.03502417916729428
MVVTSYRK	8	Unmodified	_MVVTSYRK_					0	0	0			REV__ENSG00000131037|ENST00000201647|EPS8L1	REV__ENSG00000131037|ENST00000201647|EPS8L1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	492.27077	982.526987	1.9556	0.00096269	-2.895	-0.0014251	-0.93936	-0.00046242	492.2692604120554	82.329	0.55099	82.329	82.101	82.652	0	0	0	NaN	63.306	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1226600	+		39070	18993	32251	32273							0.03502417916729428
MVVVRLSPV	9	Unmodified	_MVVVRLSPV_					0	0	0		ENST00000441964.1_1_3:43122946-43132044:-|nuORF	ENST00000441964.1_1_3:43122946-43132044:-|nuORF	ENST00000441964.1_1_3:43122946-43132044:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	500.3045959472656	2	500.304613	998.594672	-0.65241	-0.0003264	-0.29969	-0.00014993	-0.9521	-0.00047634	500.30440665060695	98.167	1.7783	96.408	95.672	97.45	-1.7595					81	34	4	0	0	0	0.40667	1	6554	6554		51.335	1.3109	1	405910			39071	11935	32252	32274	42388	42388					0.09531867847533704
MVWLCVLHS	9	Carbamidomethyl (C)	_MVWLC(Carbamidomethyl (C))VLHS_	MVWLC(1)VLHS		MVWLC(66)VLHS		0	1	0		ENST00000505443.1_1_5:3531983-3536103:-|nuORF	ENST00000505443.1_1_5:3531983-3536103:-|nuORF	ENST00000505443.1_1_5:3531983-3536103:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	572.7850341796875	2	572.78573	1143.55691	-0.72166	-0.00041335	-0.66108	-0.00037866	-1.3827	-0.00079201	572.7852042394844	102.79	2.8693	101.27	100.58	103.45	-1.5211					127	54	3	0	0	0	0.27546	1	7122	7122		65.803	11.027	1	1330700			39072	12895	32253	32275	42389	42389	151				-0.009129664096008128
MVWLCVLHS	9	Carbamidomethyl (C)	_MVWLC(Carbamidomethyl (C))VLHS_	MVWLC(1)VLHS		MVWLC(63)VLHS		0	1	0		ENST00000505443.1_1_5:3531983-3536103:-|nuORF	ENST00000505443.1_1_5:3531983-3536103:-|nuORF	ENST00000505443.1_1_5:3531983-3536103:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	572.7854614257812	2	572.78573	1143.55691	-0.7014	-0.00040175	-0.49389	-0.00028289	-1.1953	-0.00068465	572.7852955228963	103.46	2.3476	101.32	100.63	102.98	-2.1388					117	43	3	0	0	0	0.29717	1	9318	9318		63.306	6.8725	1	1167800			39073	12895	32253	32275	42390	42390	151				-0.009129664096008128
MVYFIPYD	8	Unmodified	_MVYFIPYD_					0	0	0			REV__nc|ENSG00000001461|Q6P499-2|NIPAL3	REV__nc|ENSG00000001461|Q6P499-2|NIPAL3	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.2893676757812	2	524.246429	1046.47831	0.75832	0.00039755	-1.6145	-0.00084637	-0.85613	-0.00044883	524.2451664790018	142.98	0.63048	142.98	142.69	143.32	0					23	12	3	0	0	0	0.028476	1	16732	16732		44.531	7.5026	1	47429	+		39074	16360	32254	32276	42391	42391					-0.0430749544302671
MVYGVCDHK	9	Unmodified	_MVYGVCDHK_					0	0	0			REV__ENST00000469080.5_1_X:47092634-47106681:+|nuORF	REV__ENST00000469080.5_1_X:47092634-47106681:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.267578125	2	526.238612	1050.46267	-1.2457	-0.00065554	0.92462	0.00048657	-0.32108	-0.00016897	526.2389625836054	90.71	0.86475	88.629	88.209	89.073	-2.0805					24	16	2	0	0	0	0.027462	1	5653	5653		47.916	7.343	1	35150	+		39075	17545	32255	32277	42392	42392					-0.06054105231737594
MVYIATKIK	9	Unmodified	_MVYIATKIK_					0	0	0		tr|A0A7D6VU25|A0A7D6VU25_9CLOTChromosomalreplicationinitiatorproteinDnaAOS=ClostridiumintestinaleOX=36845GN=dnaAPE=3SV=1	tr|A0A7D6VU25|A0A7D6VU25_9CLOTChromosomalreplicationinitiatorproteinDnaAOS=ClostridiumintestinaleOX=36845GN=dnaAPE=3SV=1	tr|A0A7D6VU25|A0A7D6VU25_9CLOTChromosomalreplicationinitiatorproteinDnaAOS=ClostridiumintestinaleOX=36845GN=dnaAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	533.822021484375	2	533.820095	1065.62564	0.24945	0.00013316	2.8049	0.0014973	3.0544	0.0016305	533.8213653608068	46.24	0.47762	46.24	46.024	46.501	0					31	10	4	0	0	0	0.34496	1	3254	3254		57.811	3.035	1	787660			39076	35159	32256	32278	42393	42393					0.09545021161761724
MWFEQLETL	9	Oxidation (M)	_M(Oxidation (M))WFEQLETL_		M(1)WFEQLETL		M(49)WFEQLETL	0	0	1			REV__nc|ENSG00000115685|Q15435-2|PPP1R7	REV__nc|ENSG00000115685|Q15435-2|PPP1R7	MULTI-MSMS	OvCa99_classI_Rep5	1	607.2854614257812	2	606.783907	1211.55326	0.81686	0.00049566	-2.6336	-0.001598	-1.8167	-0.0011024	606.7852068351572	140.84	1.1911	140.84	140.49	141.69	0					39	23	4	0	0	0	0.42676	1	16444	16444		49.442	7.0454	1	115440	+		39077	18264	32257	32279	42394	42394		420			-0.04405357702444235
MWIIKPKP	8	Unmodified	_MWIIKPKP_					0	0	0			REV__ENSG00000133055|ENST00000255416|MYBPH	REV__ENSG00000133055|ENST00000255416|MYBPH	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.28485107421875	2	506.804248	1011.59394	0.21394	0.00010843	-0.75699	-0.00038365	-0.54305	-0.00027522	506.8035943617565	46.347	0.43245	46.347	46.024	46.456	0					13	9	2	0	0	0	0.028476	1	3250	3250		28.254	8.8943	1	313280	+		39078	19121	32258	32280	42395	42395					0.08861073198477243
MWKILLHIL	9	Unmodified	_MWKILLHIL_					0	0	0		HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|333|2|anti-sense	HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|333|2|anti-sense	HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|333|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	583.859375	2	583.859555	1165.70456	-5.3703	-0.0031355	4.1228	0.0024071	-1.2475	-0.00072837	583.8618452827162	155.36	1.2983	153.87	153.54	154.84	-1.4911					100	37	4	0	0	0	0.6959	1	15377	15377		19.36	0.25645	1	230740			39079	14428	32259	32281	42396	42396					0.12833293186736228
MWNERALRI	9	Oxidation (M)	_M(Oxidation (M))WNERALRI_		M(1)WNERALRI		M(73)WNERALRI	0	0	1		tr|A0A7D6ZJA0|A0A7D6ZJA0_9CLOTTetratricopeptiderepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07915PE=4SV=1	tr|A0A7D6ZJA0|A0A7D6ZJA0_9CLOTTetratricopeptiderepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07915PE=4SV=1	tr|A0A7D6ZJA0|A0A7D6ZJA0_9CLOTTetratricopeptiderepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07915PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	602.8209228515625	2	602.816407	1203.61826	2.3119	0.0013936	0.25409	0.00015317	2.566	0.0015468	602.8178832936115	105.68	1.4579	104.33	103.94	105.4	-1.3482					114	27	8	0	0	0	0.22035	1	7424	7424		72.879	9.573	1	605980			39080	35638	32260	32282	42397	42397		775			0.024596816140501687
MWTGSHLKPF	10	Unmodified	_MWTGSHLKPF_					0	0	0		ENSG00000119685|ENST00000298832|TTLL5;TTLL5-IFT43|6|fusion;TTLL5-IFT43|5|fusion;TTLL5-IFT43|4|fusion;TTLL5-IFT43|3|fusion;TTLL5-IFT43|2|fusion;TTLL5-IFT43|1|fusion;nc|ENSG00000119685|Q6EMB2-3|TTLL5	ENSG00000119685|ENST00000298832|TTLL5	ENSG00000119685|ENST00000298832|TTLL5	MULTI-MSMS	OvCa99_classI_Rep5	1	602.3014526367188	2	602.302601	1202.59065	1.2398	0.00074675	-3.6137	-0.0021765	-2.3739	-0.0014298	602.3002471887553	154.59	0.50462	154.59	154.27	154.78	0					20	9	3	0	0	0	0.50999	1	18114	18114		52.937	4.9772	1	124960			39081	3382	32261	32283	42398	42398					-0.0025422164619612886
MYAKPEHIE	9	Unmodified	_MYAKPEHIE_					0	0	0		tr|A0A553SLR8|A0A553SLR8_NIACIBeta-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_21165PE=3SV=1	tr|A0A553SLR8|A0A553SLR8_NIACIBeta-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_21165PE=3SV=1	tr|A0A553SLR8|A0A553SLR8_NIACIBeta-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_21165PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	559.2684936523438	2	559.270967	1116.52738	-0.25427	-0.0001422	-3.6251	-0.0020274	-3.8794	-0.0021696	559.2688141503189	37.136	3.4912	37.136	36.662	40.154	0					134	77	3	0	0	0	0.50149	1	2016	2016		42.396	1.618	1	738250			39082	33757	32262	32284	42399	42399					-0.02622207154058742
MYAKPEHIE	9	Unmodified	_MYAKPEHIE_					0	0	0		tr|A0A553SLR8|A0A553SLR8_NIACIBeta-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_21165PE=3SV=1	tr|A0A553SLR8|A0A553SLR8_NIACIBeta-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_21165PE=3SV=1	tr|A0A553SLR8|A0A553SLR8_NIACIBeta-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_21165PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.2694702148438	2	559.270967	1116.52738	-0.067653	-3.7836E-05	-3.7396	-0.0020915	-3.8073	-0.0021293	559.2687448692571	42.473	1.552	39.493	39.064	40.616	-2.9804					79	29	4	0	0	0	0.33652	1	1947	1947		58.782	9.3404	1	458750			39083	33757	32262	32284	42400	42400					-0.02622207154058742
MYCEPNQLK	9	Carbamidomethyl (C),Oxidation (M)	_M(Oxidation (M))YC(Carbamidomethyl (C))EPNQLK_	MYC(1)EPNQLK	M(1)YCEPNQLK	MYC(66)EPNQLK	M(66)YCEPNQLK	0	1	1		tr|A0A553SQD8|A0A553SQD8_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26425PE=4SV=1	tr|A0A553SQD8|A0A553SQD8_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26425PE=4SV=1	tr|A0A553SQD8|A0A553SQD8_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26425PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	599.78466796875	2	599.765191	1197.51583	2.1232	0.0012734	3.6324	0.0021786	5.7556	0.003452	599.7670565147542	128.63	0.9826	128.63	128.37	129.35	0					40	20	3	0	0	0	0.27001	1	14904	14904		66.429	15.237	1	574220			39084	34150	32263	32285	42401	42401	382	754			-0.0750277223971807
MYCIRFHK	8	Unmodified	_MYCIRFHK_					0	0	0			REV__ENST00000374446.6_1_10:44053538-44053610:-|nuORF	REV__ENST00000374446.6_1_10:44053538-44053610:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	549.2738647460938	2	549.27279	1096.53103	0.011873	6.5217E-06	3.9818	0.0021871	3.9937	0.0021936	549.2742990996458	32.277	0.79155	29.567	29.382	30.173	-2.7097					35	15	4	0	0	0	0.75915	1	1063	1063		20.482	2.1574	1	53649	+		39085	25062	32264	32286	42402	42402					-0.013378158612113111
MYFKMSLL	8	Oxidation (M)	_M(Oxidation (M))YFKMSLL_		M(1)YFKMSLL		M(44)YFKM(-44)SLL	0	0	1			REV__ENST00000302764.8_1_5:162880677-162880902:-|nuORF	REV__ENST00000302764.8_1_5:162880677-162880902:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	524.7647094726562	2	524.763932	1047.51331	1.2156	0.00063789	2.2946	0.0012041	3.5101	0.001842	524.7650401246628	128.53	2.025	128.31	127.54	129.56	-0.22697					74	40	3	0	0	0	0.67745	1	12598	12598		47.916	6.489	2	156760	+		39086	24264	32265	32287	42403	42403		556			-0.008545759067146719
MYFSLRIK	8	Oxidation (M)	_M(Oxidation (M))YFSLRIK_		M(1)YFSLRIK		M(89)YFSLRIK	0	0	1		ENST00000381070.7_1_5:64313993-64314029:+|nuORF	ENST00000381070.7_1_5:64313993-64314029:+|nuORF	ENST00000381070.7_1_5:64313993-64314029:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	537.2946166992188	2	537.294245	1072.57394	-1.8238	-0.00097994	4.2648	0.0022914	2.4409	0.0013115	537.2965706710853	60.933	2.3725	58.163	57.501	59.873	-2.7702					136	45	4	0	0	0	0.39692	2	4497	4492;4497		88.643	16.765	1	2338900			39087	11157	32266	32288	42404;42405	42405		316			0.04055277467864471
MYFSLRIK	8	Oxidation (M)	_M(Oxidation (M))YFSLRIK_					0	0	1		ENST00000381070.7_1_5:64313993-64314029:+|nuORF	ENST00000381070.7_1_5:64313993-64314029:+|nuORF	ENST00000381070.7_1_5:64313993-64314029:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	537.294245	1072.57394	2.862	0.0015377	0.35631	0.00019144	3.2183	0.0017292	537.2944304592273	61.46	1.3887	58.392	58.138	59.526	-3.0685	0.10934	-0.0034971	NaN	88.643	45	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14740			39088	11157	32266	32288				316			0.04055277467864471
MYGIPLVII	9	Unmodified	_MYGIPLVII_					0	0	0			REV__tr|A0A553SUK4|A0A553SUK4_NIACIMATEfamilyeffluxtransporterOS=NialliacirculansOX=1397GN=CEQ21_01055PE=4SV=1	REV__tr|A0A553SUK4|A0A553SUK4_NIACIMATEfamilyeffluxtransporterOS=NialliacirculansOX=1397GN=CEQ21_01055PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.80364990234375	2	509.803914	1017.59328	2.0238	0.0010317	-2.3362	-0.001191	-0.31239	-0.00015926	509.80258654056354	136.53	4.9049	134.99	133.61	138.51	-1.5437					290	101	5	0	0	0	0.53728	1	13337	13337		39.021	5.5059	1	173450	+		39089	31090	32267	32289	42406	42406					0.08518233758763927
MYHRITDI	8	Oxidation (M)	_M(Oxidation (M))YHRITDI_		M(1)YHRITDI		M(49)YHRITDI	0	0	1			REV__tr|A0A7D6ZU83|A0A7D6ZU83_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23130PE=4SV=1	REV__tr|A0A7D6ZU83|A0A7D6ZU83_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23130PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	532.76318359375	2	532.763309	1063.51206	0.13559	7.2236E-05	-0.2184	-0.00011635	-0.08281	-4.4118E-05	532.7630671747069	118.53	2.6747	117.51	115.36	118.03	-1.0271					111	53	3	0	0	0	0.66992	1	8978	8978		49.442	7.0454	1	168650	+		39090	32215	32268	32290	42407	42407		716			-0.017150739512771906
MYHRITDI	8	Oxidation (M)	_M(Oxidation (M))YHRITDI_		M(1)YHRITDI		M(60)YHRITDI	0	0	1			REV__tr|A0A7D6ZU83|A0A7D6ZU83_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23130PE=4SV=1	REV__tr|A0A7D6ZU83|A0A7D6ZU83_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23130PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.7626342773438	2	532.763309	1063.51206	-2.1899	-0.0011667	2.2567	0.0012023	0.06682	3.5599E-05	532.7643655204938	118.83	2.191	117.49	115.84	118.03	-1.3444					91	41	4	0	0	0	0.61758	1	11146	11146		60.294	8.9585	1	175550	+		39091	32215	32268	32290	42408	42408		716			-0.017150739512771906
MYIRYIHKL	9	Unmodified	_MYIRYIHKL_					0	0	0		DOCK4|p.F1456Lfs*4|1|0.11|ENSG00000128512|chr7:111755521-111755536|ACGCTTTTCCACTTCA/-|frameshift_variant;ENSG00000088538|ENST00000266037|DOCK3;DOCK3|p.K1465Pfs*18|1|0.29|ENSG00000088538|chr3:51356230-51356231|-/TCCCCTCACCTTTCACACACAGCTTCCTTGGGGACCA|frameshift_variant;nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4	DOCK4|p.F1456Lfs*4|1|0.11|ENSG00000128512|chr7:111755521-111755536|ACGCTTTTCCACTTCA/-|frameshift_variant;ENSG00000088538|ENST00000266037|DOCK3;nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MSMS	OvCa99_classI_Rep5	1	412.90350341796875	3	412.902238	1235.68488	0.50485	0.00020846	-0.4513	-0.00018634	0.053556	2.2113E-05	412.90194365821856	68.42	0.82711	68.42	68.192	69.019	0					50	19	3	0	0	0	0.37135	1	6458	6458		54.776	8.8244	1	3985200			39092	3882;758;1791	32269	32291	42409	42409					0.07646917175952694
MYIRYIHKL	9	Unmodified	_MYIRYIHKL_					0	0	0		DOCK4|p.F1456Lfs*4|1|0.11|ENSG00000128512|chr7:111755521-111755536|ACGCTTTTCCACTTCA/-|frameshift_variant;ENSG00000088538|ENST00000266037|DOCK3;DOCK3|p.K1465Pfs*18|1|0.29|ENSG00000088538|chr3:51356230-51356231|-/TCCCCTCACCTTTCACACACAGCTTCCTTGGGGACCA|frameshift_variant;nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4	DOCK4|p.F1456Lfs*4|1|0.11|ENSG00000128512|chr7:111755521-111755536|ACGCTTTTCCACTTCA/-|frameshift_variant;ENSG00000088538|ENST00000266037|DOCK3;nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MSMS	OvCa99_classI_Rep5	1	618.8525390625	2	618.849719	1235.68488	-0.58652	-0.00036297	0.052698	3.2612E-05	-0.53382	-0.00033036	618.8495375475878	68.446	0.82536	68.446	68.152	68.977	0					41	19	3	0	0	0	0.29519	1	6462	6462		56.721	3.7844	1	2481800			39093	3882;758;1791	32269	32291	42410	42410					0.07646917175952694
MYIRYLYKL	9	Unmodified	_MYIRYLYKL_					0	0	0		nc|ENSG00000150760|Q14185|DOCK1;ENSG00000150760|ENST00000623213|DOCK1;ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF	nc|ENSG00000150760|Q14185|DOCK1;ENSG00000134516|ENST00000520908|DOCK2	ENSG00000134516|ENST00000520908|DOCK2	MULTI-MSMS	OvCa99_classI_Rep5	1	631.8560180664062	2	631.851927	1261.6893	2.4253	0.0015324	0.34955	0.00022086	2.7748	0.0017533	631.8519004964775	99.928	0.75117	99.928	99.736	100.49	0					39	17	3	0	0	0	0.14998	1	11063	11063		84.916	21.609	1	2142100			39094	4305;5517	32270	32292	42411	42411					0.06892381598868269
MYITALLGNT	10	Unmodified	_MYITALLGNT_					0	0	0		ENSG00000232268|ENST00000530443|OR52I1	ENSG00000232268|ENST00000530443|OR52I1	ENSG00000232268|ENST00000530443|OR52I1	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.7874755859375	2	548.788992	1095.56343	0.69367	0.00038068	-2.3126	-0.0012691	-1.619	-0.00088847	548.787840350563	35.594	1.9958	32.745	32.391	34.386	-2.849					120	39	4	0	0	0	0.67931	1	1246	1246		32.812	4.9302	1	883440			39095	9293	32271	32293	42412	42412					0.019472500227720957
MYKKTAFS	8	Oxidation (M)	_M(Oxidation (M))YKKTAFS_		M(1)YKKTAFS		M(71)YKKTAFS	0	0	1			REV__nc|ENSG00000123473|Q15468|STIL	REV__nc|ENSG00000123473|Q15468|STIL	MULTI-MSMS	OvCa99_classI_Rep5	1	496.24688720703125	2	496.249503	990.484453	-1.2109	-0.0006009	-1.837	-0.00091163	-3.0479	-0.0015125	496.2483902141358	43.675	0.72269	43.675	43.143	43.866	0					37	16	4	0	0	0	0.56195	1	2892	2892		71.296	10.324	1	2043900	+		39096	18643	32272	32294	42413	42413		429			-0.011169772114953957
MYLDLVQLY	9	Oxidation (M)	_M(Oxidation (M))YLDLVQLY_		M(1)YLDLVQLY		M(48)YLDLVQLY	0	0	1			REV__tr|A0A553SK49|A0A553SK49_NIACITetratricopeptiderepeatproteinOS=NialliacirculansOX=1397GN=CEQ21_18195PE=4SV=1	REV__tr|A0A553SK49|A0A553SK49_NIACITetratricopeptiderepeatproteinOS=NialliacirculansOX=1397GN=CEQ21_18195PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	587.2938842773438	2	587.29665	1172.57875	-1.7713	-0.0010403	-0.98589	-0.00057901	-2.7572	-0.0016193	587.2959419520926	118.58	1.9781	118.43	118.08	120.06	-0.14754					123	39	5	0	0	0	0.44568	3	11416	11365;11370;11416		47.657	11.211	1	499840	+		39097	30077	32273	32295	42414;42415;42416	42416		660			-0.0006388318004155735
MYLKKIQPN	9	Unmodified	_MYLKKIQPN_					0	0	0		tr|A0A553SLN1|A0A553SLN1_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_20980PE=4SV=1	tr|A0A553SLN1|A0A553SLN1_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_20980PE=4SV=1	tr|A0A553SLN1|A0A553SLN1_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_20980PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.8241577148438	2	567.820627	1133.6267	3.6447	0.0020696	0.77826	0.00044191	4.423	0.0025115	567.8209628787964	134.71	0.44521	133.17	133.02	133.46	-1.5437					15	8	3	0	0	0	0.46377	1	13029	13029		45.952	1.4209	1	59769			39098	33743	32274	32296	42417	42417					0.06523235530676175
MYLKKIQPN	9	Unmodified	_MYLKKIQPN_					0	0	0		tr|A0A553SLN1|A0A553SLN1_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_20980PE=4SV=1	tr|A0A553SLN1|A0A553SLN1_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_20980PE=4SV=1	tr|A0A553SLN1|A0A553SLN1_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_20980PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	567.820627	1133.6267	-0.047174	-2.6786E-05	4.0739	0.0023132	4.0267	0.0022864	567.8228430002958	133.4	0.78902	133.17	133.07	133.85	-0.22696	-0.0040997	0.0023336	NaN	45.952	20	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40217			39099	33743	32274	32296							0.06523235530676175
MYLKKIQPN	9	Unmodified	_MYLKKIQPN_					0	0	0		tr|A0A553SLN1|A0A553SLN1_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_20980PE=4SV=1	tr|A0A553SLN1|A0A553SLN1_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_20980PE=4SV=1	tr|A0A553SLN1|A0A553SLN1_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_20980PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	567.820627	1133.6267	-0.73809	-0.0004191	3.7427	0.0021252	3.0046	0.0017061	567.8227687636943	134.31	0.34589	133.18	133.11	133.46	-1.1226	0.0095401	0.0019575	NaN	45.952	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37907			39100	33743	32274	32296							0.06523235530676175
MYLKTVDKF	9	Unmodified	_MYLKTVDKF_					0	0	0		nc|ENSG00000196459|P0DI81-2|TRAPPC2;ENSG00000256060|ENST00000543226|TRAPPC2B;ENSG00000196459|ENST00000380579|TRAPPC2;nc|ENSG00000196459|P0DI81-3|TRAPPC2	nc|ENSG00000196459|P0DI81-2|TRAPPC2	nc|ENSG00000196459|P0DI81-2|TRAPPC2	MULTI-MSMS	OvCa99_classI_Rep5	1	572.8079223632812	2	572.807185	1143.59982	2.4473	0.0014019	-2.0355	-0.0011659	0.41187	0.00023592	572.8059592030855	75.349	0.80244	75.349	74.962	75.764	0					31	19	2	0	0	0	0.024645	1	7499	7499		141.52	35.105	1	7608000			39101	8612	32275	32297	42418	42418					0.033761269194883425
MYLKTVDKF	9	Unmodified	_MYLKTVDKF_					0	0	0		nc|ENSG00000196459|P0DI81-2|TRAPPC2;ENSG00000256060|ENST00000543226|TRAPPC2B;ENSG00000196459|ENST00000380579|TRAPPC2;nc|ENSG00000196459|P0DI81-3|TRAPPC2	nc|ENSG00000196459|P0DI81-2|TRAPPC2	nc|ENSG00000196459|P0DI81-2|TRAPPC2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	572.807185	1143.59982	-0.37344	-0.00021391	-3.0006	-0.0017188	-3.3741	-0.0019327	572.8059837425358	77.978	0.29362	75.161	75.018	75.312	-2.8165	-0.094094	-0.00090993	NaN	141.52	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25490			39102	8612	32275	32297							0.033761269194883425
MYLLLIASVD	10	Unmodified	_MYLLLIASVD_					0	0	0		nc|ENSG00000165409|P16473|TSHR;ENSG00000165409|ENST00000298171|TSHR	nc|ENSG00000165409|P16473|TSHR	nc|ENSG00000165409|P16473|TSHR	MULTI-SECPEP	OvCa9_classI_Rep4_	4	569.3367919921875	2	569.314843	1136.61513	3.1469	0.0017916	3.95	0.0022488	7.0969	0.0040404	569.317021896147	135.35	0.54431	133.8	133.61	134.15	-1.5437					15	10	2	0	0	0	0.026982	1	13081	13081		23.042	0	1	16662			39103	6559	32276	32298	42419	42419					0.052289937166960954
MYLLVHDSSN	10	Unmodified	_MYLLVHDSSN_					0	0	0			REV__ENST00000369244.6_1_6:99374760-99382655:-|nuORF	REV__ENST00000369244.6_1_6:99374760-99382655:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	589.7788696289062	2	589.779156	1177.54376	0.18372	0.00010835	-0.26325	-0.00015526	-0.079534	-4.6907E-05	589.7789289906962	126.64	1.831	125.57	124.92	126.75	-1.0715					52	34	2	0	0	0	0.64697	1	9896	9896		36.447	1.2947	1	186880	+		39104	23787	32277	32299	42420	42420					-0.037911259879820136
MYLTSALAYS	10	Unmodified	_MYLTSALAYS_					0	0	0			REV__tr|A0A553SLE6|A0A553SLE6_NIACICitratelyasesubunitbetaOS=NialliacirculansOX=1397GN=CEQ21_20495PE=4SV=1	REV__tr|A0A553SLE6|A0A553SLE6_NIACICitratelyasesubunitbetaOS=NialliacirculansOX=1397GN=CEQ21_20495PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	560.2760620117188	2	560.273175	1118.5318	0.059706	3.3452E-05	3.3995	0.0019046	3.4592	0.0019381	560.2749568783789	106.86	2.1744	105.6	105.27	107.44	-1.267					110	42	3	0	0	0	0.53885	2	7607	7553;7607		49.442	6.5773	1	1807000	+		39105	30217	32278	32300	42421;42422	42422					-0.02272742731179278
MYPPAFRF	8	Unmodified	_MYPPAFRF_					0	0	0		nc|ENSG00000059377|P24557-3|TBXAS1;ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-4|TBXAS1;nc|ENSG00000059377|P24557-2|TBXAS1;ENSG00000059377|ENST00000448866|TBXAS1	nc|ENSG00000059377|P24557-3|TBXAS1	nc|ENSG00000059377|P24557-3|TBXAS1	MULTI-MSMS	OvCa99_classI_Rep5	1	514.755615234375	2	514.754756	1027.49496	1.382	0.00071139	0.65887	0.00033916	2.0409	0.0010505	514.7548524737875	109.04	1.1888	109.04	108.71	109.9	0					64	26	4	0	0	0	0.71369	1	12354	12354		40.573	7.7602	1	2183400			39106	14879	32279	32301	42423	42423					-0.017689497664377996
MYPYIFHVL	9	Oxidation (M)	_M(Oxidation (M))YPYIFHVL_		M(1)YPYIFHVL		M(60)YPYIFHVL	0	0	1		nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;FAM120A|p.R999*|1|0.08|ENSG00000048828|chr9:93562253-93562254|-/T|frameshift_variant;FAM120A|p.S1040Lfs*12|1|0.09|ENSG00000048828|chr9:93564300-93564301|-/C|frameshift_variant;FAM120A|p.V1027Tfs*33|1|0.06|ENSG00000048828|chr9:93564260-93564261|-/GACTGTATTTCCCC|frameshift_variant;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF	nc|ENSG00000048828|Q9NZB2-2|FAM120A	nc|ENSG00000048828|Q9NZB2-2|FAM120A	MULTI-MSMS	OvCa99_classI_Rep5	1	599.8038330078125	2	599.801903	1197.58925	2.0961	0.0012573	0.25058	0.0001503	2.3467	0.0014075	599.8017450360468	128.55	0.98083	128.55	127.95	128.93	0					59	20	4	0	0	0	0.32242	1	14885	14885		60.404	18.007	1	404880			39107	1161	32280	32302	42424	42424		42			-0.0016385573494517303
MYPYIFHVL	9	Oxidation (M)	_M(Oxidation (M))YPYIFHVL_		M(1)YPYIFHVL		M(49)YPYIFHVL	0	0	1		nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;FAM120A|p.R999*|1|0.08|ENSG00000048828|chr9:93562253-93562254|-/T|frameshift_variant;FAM120A|p.S1040Lfs*12|1|0.09|ENSG00000048828|chr9:93564300-93564301|-/C|frameshift_variant;FAM120A|p.V1027Tfs*33|1|0.06|ENSG00000048828|chr9:93564260-93564261|-/GACTGTATTTCCCC|frameshift_variant;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF	nc|ENSG00000048828|Q9NZB2-2|FAM120A	nc|ENSG00000048828|Q9NZB2-2|FAM120A	MULTI-MSMS	OvCa99_classI_Rep5	1	599.8040161132812	2	599.801903	1197.58925	1.866	0.0011192	-0.047416	-2.844E-05	1.8186	0.0010908	599.8017676798917	129.29	2.8297	129.29	128.84	131.67	0					131	59	3	0	0	0	0.42921	1	15033	15033		49.211	9.958	1	262510			39108	1161	32280	32302	42425	42425		42			-0.0016385573494517303
MYPYIFHVL	9	Unmodified	_MYPYIFHVL_					0	0	0		nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;FAM120A|p.R999*|1|0.08|ENSG00000048828|chr9:93562253-93562254|-/T|frameshift_variant;FAM120A|p.S1040Lfs*12|1|0.09|ENSG00000048828|chr9:93564300-93564301|-/C|frameshift_variant;FAM120A|p.V1027Tfs*33|1|0.06|ENSG00000048828|chr9:93564260-93564261|-/GACTGTATTTCCCC|frameshift_variant;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A;ENST00000475933.1_1_9:96291769-96293007:+|nuORF	nc|ENSG00000048828|Q9NZB2-2|FAM120A	nc|ENSG00000048828|Q9NZB2-2|FAM120A	MULTI-MSMS	OvCa99_classI_Rep5	1	591.8054809570312	2	591.804445	1181.59434	1.789	0.0010587	0.26539	0.00015706	2.0544	0.0012158	591.804480508264	135.65	3.4196	135.65	135.13	138.55	0					164	72	4	0	0	0	0.032374	8	15815	15769;15791;15815;15839;15863;15878;15887;15912		133.45	73.046	1	6092400			39109	1161	32280	32303	42426;42427;42428;42429;42430;42431;42432;42433	42428					0.010804481276863953
MYPYLKVGTV	10	Unmodified	_MYPYLKVGTV_					0	0	0		ENST00000396604.5_1_11:9495532-9496114:+|nuORF	ENST00000396604.5_1_11:9495532-9496114:+|nuORF	ENST00000396604.5_1_11:9495532-9496114:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	585.8156127929688	2	585.81501	1169.61547	0.94263	0.0005522	-1.8283	-0.0010711	-0.88569	-0.00051885	585.8138244748638	155.41	1.0628	155.41	154.98	156.04	0					46	20	3	0	0	0	0.5675	1	18196	18196		45.972	1.8554	1	302930			39110	11322	32281	32304	42434	42434					0.03744413436538707
MYRGIYTV	8	Unmodified	_MYRGIYTV_					0	0	0		ENSG00000100314|ENST00000216144|CABP7	ENSG00000100314|ENST00000216144|CABP7	ENSG00000100314|ENST00000216144|CABP7	MULTI-MSMS	OvCa99_classI_Rep5	1	501.7583312988281	2	501.757495	1001.50044	2.6521	0.0013307	-0.40026	-0.00020083	2.2519	0.0011299	501.75716653820064	89.331	1.3777	89.331	89.043	90.421	0					81	33	4	0	0	0	0.57734	1	9550	9550		68.787	14.011	1	8951900			39111	2044	32282	32305	42435	42435					-0.0002527097459505967
MYRGIYTV	8	Unmodified	_MYRGIYTV_					0	0	0		ENSG00000100314|ENST00000216144|CABP7	ENSG00000100314|ENST00000216144|CABP7	ENSG00000100314|ENST00000216144|CABP7	MULTI-MATCH	OvCa9_classI_Rep2	2		2	501.757495	1001.50044	1.1978	0.000601	-3.6991	-0.0018561	-2.5013	-0.0012551	502.7568317517205	90.305	0.29687	89.003	88.78	89.077	-1.302	-0.16408	-0.0031921	NaN	68.787	9	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10728			39112	2044	32282	32305							-0.0002527097459505967
MYRVLGSISCS	11	Unmodified	_MYRVLGSISCS_					0	0	0			REV__tr|A0A7D6VT35|A0A7D6VT35_9CLOTRadicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06475PE=4SV=1	REV__tr|A0A7D6VT35|A0A7D6VT35_9CLOTRadicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06475PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	608.2955932617188	2	608.296659	1214.57876	3.6539	0.0022227	-3.5754	-0.0021749	0.078474	4.7736E-05	608.2942855637167	59.026	3.3501	55.911	55.036	58.386	-3.1147					203	93	3	0	0	0	0.71191	1	1842	1842		25.574	2.0514	1	283460	+		39113	31569	32283	32306	42436	42436					-0.019942064516726532
MYSDVWKQL	9	Unmodified	_MYSDVWKQL_					0	0	0		ENST00000393448.6_1_5:179018652-179028988:+|nuORF;nc|ENSG00000176783|Q96T51-2|RUFY1;ENSG00000176783|ENST00000319449|RUFY1	ENST00000393448.6_1_5:179018652-179028988:+|nuORF	ENST00000393448.6_1_5:179018652-179028988:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	585.2885131835938	2	585.286617	1168.55868	1.6619	0.00097271	0.4522	0.00026467	2.1141	0.0012374	585.2867255425466	106.78	0.7822	106.78	106.41	107.19	0					37	17	4	0	0	0	0.029147	1	12022	12022		136.27	1.4574	1	2106200			39114	7629	32284	32307	42437	42437					-0.018856341199807503
MYTYTHPPTC	10	Carbamidomethyl (C)	_MYTYTHPPTC(Carbamidomethyl (C))_	MYTYTHPPTC(1)		MYTYTHPPTC(55)		0	1	0		ENST00000372390.8_1_X:106957032-106957083:-|nuORF	ENST00000372390.8_1_X:106957032-106957083:-|nuORF	ENST00000372390.8_1_X:106957032-106957083:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	424.18072509765625	3	424.17922	1269.51583	3.6107	0.0015316	-1.0543	-0.00044723	2.5563	0.0010843	424.1786749557755	88.055	0.7991	88.055	87.838	88.637	0					43	18	3	0	0	0	0.49595	1	9352	9352		54.722	11.072	1	1277300			39115	10977	32285	32308	42438	42438	115				-0.10814772239723425
MYYNTTSKVK	10	Unmodified	_MYYNTTSKVK_					0	0	0		ENSG00000182156|ENST00000328313|ENPP7	ENSG00000182156|ENST00000328313|ENPP7	ENSG00000182156|ENST00000328313|ENPP7	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.2254333496094	3	412.209396	1233.60636	1.0613	0.00043746	2.3553	0.0009709	3.4166	0.0014084	412.21026575352215	57.288	0.38642	57.288	57.093	57.48	0					13	8	2	0	0	0	0.026819	1	4784	4784		28.577	17.99	1	115600			39116	7973	32286	32309	42439	42439					-0.0010997991980730148
MYYSAVEP	8	Unmodified	_MYYSAVEP_					0	0	0		ENST00000490639.5_1_3:148895590-148939579:-|nuORF;ENSG00000047457|ENST00000264613|CP;ENST00000489736.5_1_3:148904295-148925363:-|nuORF;ENST00000497797.5_1_3:148905800-148917562:-|nuORF	ENST00000490639.5_1_3:148895590-148939579:-|nuORF	ENST00000490639.5_1_3:148895590-148939579:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	480.2150573730469	2	480.212586	958.410619	0.0824	3.957E-05	3.6073	0.0017323	3.6897	0.0017718	480.21418147618385	111.38	1.4293	111.24	110.73	112.16	-0.13961					75	28	4	0	0	0	0.71369	1	10500	10500		40.573	1.3198	1	270160			39117	1145	32287	32310	42440	42440					-0.07024945373837
MYYSAVEP	8	Unmodified	_MYYSAVEP_					0	0	0		ENST00000490639.5_1_3:148895590-148939579:-|nuORF;ENSG00000047457|ENST00000264613|CP;ENST00000489736.5_1_3:148904295-148925363:-|nuORF;ENST00000497797.5_1_3:148905800-148917562:-|nuORF	ENST00000490639.5_1_3:148895590-148939579:-|nuORF	ENST00000490639.5_1_3:148895590-148939579:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.213623046875	2	480.212586	958.410619	0.24514	0.00011772	3.0444	0.001462	3.2895	0.0015797	480.21394506896644	112.48	1.4516	110.97	110.63	112.08	-1.5111					63	28	3	0	0	0	0.65582	1	10388	10388		52.299	4.3396	1	579150			39118	1145	32287	32310	42441	42441					-0.07024945373837
NAAERRGPL	9	Unmodified	_NAAERRGPL_					0	0	0		ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	MULTI-MSMS	OvCa9_classI_Rep2	2	492.2723388671875	2	492.27269	982.530826	-0.79248	-0.00039012	0.3379	0.00016634	-0.45458	-0.00022378	492.27281781556945	38.402	2.3795	35.692	35.32	37.7	-2.7097					117	47	5	0	0	0	0.16524	7	1803	1786;1791;1797;1803;1816;1822;1828		82.305	32.28	1	1550300			39119	8967	32288	32311	42442;42443;42444;42445;42446;42447;42448	42445					0.038862237347984774
NAAERRGPL	9	Unmodified	_NAAERRGPL_					0	0	0		ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.2723083496094	2	492.27269	982.530826	0.60486	0.00029776	-1.461	-0.00071919	-0.8561	-0.00042143	492.2720128221692	38.355	2.6605	35.428	35.156	37.817	-2.9264					142	52	5	0	0	0	0.091859	7	1519	1471;1483;1495;1507;1519;1531;1543		99.375	46.091	1	4917900			39120	8967	32288	32311	42449;42450;42451;42452;42453;42454;42455	42453					0.038862237347984774
NAAFALWQVF	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))NAAFALWQVF_					1	0	0			REV__ENST00000482611.5_1_10:103552686-103559078:-|nuORF	REV__ENST00000482611.5_1_10:103552686-103559078:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	604.8114624023438	2	604.808574	1207.60259	1.3189	0.0007977	0.7049	0.00042633	2.0238	0.001224	604.8087968873099	155.3	1.6655	155.3	154.17	155.84	0					95	32	4	0	0	0	0.41408	2	18211	18166;18211		66.429	12.81	1	1119600	+		39121	26506	32289	32312	42456;42457	42457					0.007097183686710196
NAAKILPI	8	Unmodified	_NAAKILPI_					0	0	0		nc|ENSG00000078304|Q13362-2|PPP2R5C;nc|ENSG00000078304|Q13362-3|PPP2R5C;nc|ENSG00000078304|Q13362|PPP2R5C;nc|ENSG00000078304|Q13362-4|PPP2R5C;nc|ENSG00000078304|Q13362-5|PPP2R5C;RCOR1-PPP2R5C|2|fusion;ENSG00000078304|ENST00000694906|PPP2R5C;RCOR1-PPP2R5C|3|fusion;RCOR1-PPP2R5C|1|fusion	nc|ENSG00000078304|Q13362-2|PPP2R5C	nc|ENSG00000078304|Q13362-2|PPP2R5C	MULTI-MSMS	OvCa9_classI_Rep2	2	420.270751953125	2	420.271096	838.527639	-1.0256	-0.00043103	1.3954	0.00058645	0.36979	0.00015541	420.2715248845695	120.07	1.0858	119.9	119.59	120.68	-0.17138					43	21	3	0	0	0	0.69415	1	11563	11563		44.531	0	1	82171			39122	1592	32290	32313	42458	42458					0.10191580628099928
NAATISRF	8	Unmodified	_NAATISRF_					0	0	0		CD3G|p.G117R|1|0.04|ENSG00000160654|chr11:118350593-118350593|G/C|missense_variant	CD3G|p.G117R|1|0.04|ENSG00000160654|chr11:118350593-118350593|G/C|missense_variant	CD3G|p.G117R|1|0.04|ENSG00000160654|chr11:118350593-118350593|G/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	440.7536926269531	2	440.237784	878.461016	0.98606	0.0004341	-0.62307	-0.0002743	0.36299	0.0001598	440.2369639331695	40.956	0.26797	40.956	40.881	41.149	0					6	5	2	0	0	0	0.028476	1	2524	2524		42.396	7.1954	1	20579			39123	206	32291	32314	42459	42459					0.01692345066192047
NAEKIVESA	9	Unmodified	_NAEKIVESA_					0	0	0			REV__tr|A0A7D6ZX10|A0A7D6ZX10_9CLOTDUF512domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09995PE=4SV=1	REV__tr|A0A7D6ZX10|A0A7D6ZX10_9CLOTDUF512domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09995PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	480.75604248046875	2	480.753464	959.492375	1.6456	0.00079115	0.32696	0.00015719	1.9726	0.00094833	480.7534792832109	74.746	0.56848	74.746	74.478	75.046	0					26	13	3	0	0	0	0.14998	1	7411	7411		84.916	2.165	1	1154100	+		39124	32308	32292	32315	42460	42460					0.011008733096332435
NAEKIVESA	9	Unmodified	_NAEKIVESA_					0	0	0			REV__tr|A0A7D6ZX10|A0A7D6ZX10_9CLOTDUF512domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09995PE=4SV=1	REV__tr|A0A7D6ZX10|A0A7D6ZX10_9CLOTDUF512domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09995PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	480.753464	959.492375	1.6456	0.00079115	0.32696	0.00015719	1.9726	0.00094833	480.7534792832109	74.746	0.56848	74.746	74.478	75.046	0	0.15615	-9.6018E-05	NaN	84.916	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1154100	+		39125	32308	32292	32315							0.011008733096332435
NAEKIVESA	9	Unmodified	_NAEKIVESA_					0	0	0			REV__tr|A0A7D6ZX10|A0A7D6ZX10_9CLOTDUF512domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09995PE=4SV=1	REV__tr|A0A7D6ZX10|A0A7D6ZX10_9CLOTDUF512domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09995PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	480.753464	959.492375	-0.41998	-0.0002019	1.4554	0.00069969	1.0354	0.00049779	480.7532559403923	77.25	0.53606	74.434	74.096	74.632	-2.8165	-0.15615	0.000989	NaN	84.916	21	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50871	+		39126	32308	32292	32315							0.011008733096332435
NAEKLSLNV	9	Unmodified	_NAEKLSLNV_					0	0	0			REV__chr1:214615028-214618573|426|36.67|0.98|5.22|+|2|CENPF,CENPF|2	REV__chr1:214615028-214618573|426|36.67|0.98|5.22|+|2|CENPF,CENPF|2	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3243713378906	2	494.277106	986.53966	0.045136	2.2309E-05	-1.3965	-0.00069026	-1.3514	-0.00066795	494.2760418078701	79.543	0.80721	77.203	76.902	77.709	-2.3399					27	15	2	0	0	0	0.027433	1	4319	4319		37.812	2.6595	1	46128	+		39127	15818	32293	32316	42461	42461					0.045851525806369864
NAELKYEL	8	Unmodified	_NAELKYEL_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4;ENST00000597277.1_9:43426178-43426727:-|nuORF	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-MSMS	OvCa99_classI_Rep5	1	490.2565612792969	2	490.258382	978.502212	2.1873	0.0010724	-0.086695	-4.2503E-05	2.1007	0.0010299	490.258191759341	91.732	0.71834	91.732	91.542	92.26	0					27	16	2	0	0	0	0.60331	1	9908	9908		63.306	0	1	1706600			39128	829	32294	32317	42462	42462					0.012100613149868877
NAERIFFY	8	Unmodified	_NAERIFFY_					0	0	0		tr|A0A553SKM0|A0A553SKM0_NIACIClassISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_18870PE=4SV=1	tr|A0A553SKM0|A0A553SKM0_NIACIClassISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_18870PE=4SV=1	tr|A0A553SKM0|A0A553SKM0_NIACIClassISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_18870PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.8080444335938	2	530.266542	1058.51853	-0.39283	-0.00020831	-1.7766	-0.00094206	-2.1694	-0.0011504	530.2665290842117	80.012	0.54482	78.317	78.124	78.668	-1.6951					13	10	2	0	0	0	0.028476	1	6781	6781		42.474	0	1	9905.9			39129	33631	32295	32318	42463	42463					-0.008388127282159985
NAETLEVYAAC	11	Unmodified	_NAETLEVYAAC_					0	0	0			REV__ENST00000313442.2_3:37284553-37285049:-|nuORF	REV__ENST00000313442.2_3:37284553-37285049:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	592.2681884765625	2	592.268621	1182.52269	0.92375	0.00054711	-1.878	-0.0011123	-0.9543	-0.0005652	592.2675033754464	151.43	0.54964	151.43	151.15	151.7	0					21	10	3	0	0	0	0.65947	1	17728	17728		39.253	1.4413	1	136890	+		39130	24370	32296	32319	42464	42464					-0.06127136087502549
NAFLILQPA	9	Unmodified	_NAFLILQPA_					0	0	0		MLT2B4_dup3464|chr13:48629362-48629529:-|1.3380693137031785|0.0001284221296633|13.35|312.0|4|2|sense	MLT2B4_dup3464|chr13:48629362-48629529:-|1.3380693137031785|0.0001284221296633|13.35|312.0|4|2|sense	MLT2B4_dup3464|chr13:48629362-48629529:-|1.3380693137031785|0.0001284221296633|13.35|312.0|4|2|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.766357421875	2	493.78711	985.559667	-0.65131	-0.00032161	-2.997	-0.0014799	-3.6483	-0.0018015	493.7853464472865	67.884	0.7397	65.223	64.743	65.483	-2.661					18	14	2	0	0	0	0.027448	1	5273	5273		44.117	0	1	14434			39131	14839	32297	32320	42465	42465					0.06630948311237717
NAFRRTTSII	10	Unmodified	_NAFRRTTSII_					0	0	0		sp|P16788|UL97_HCMVASerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL97PE=1SV=1;sp|Q6SW46|UL97_HCMVMSerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL97PE=3SV=1	sp|P16788|UL97_HCMVASerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL97PE=1SV=1	sp|P16788|UL97_HCMVASerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL97PE=1SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.8338012695312	2	589.835654	1177.65676	-1.3892	-0.0008194	-1.1683	-0.00068913	-2.5575	-0.0015085	589.8346915033269	118.83	1.2492	117.49	117.15	118.4	-1.3444					51	23	4	0	0	0	0.74374	1	11134	11134		25.574	0	1	186330			39132	32900	32298	32321	42466	42466					0.0750331052022375
NAFTRFIR	8	Unmodified	_NAFTRFIR_					0	0	0		tr|A0A553SFQ0|A0A553SFQ0_NIACIMolybdopterinmolybdenumtransferaseOS=NialliacirculansOX=1397GN=CEQ21_09205PE=3SV=1	tr|A0A553SFQ0|A0A553SFQ0_NIACIMolybdopterinmolybdenumtransferaseOS=NialliacirculansOX=1397GN=CEQ21_09205PE=3SV=1	tr|A0A553SFQ0|A0A553SFQ0_NIACIMolybdopterinmolybdenumtransferaseOS=NialliacirculansOX=1397GN=CEQ21_09205PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	512.7902221679688	2	512.787976	1023.5614	0.12759	6.5428E-05	-0.49051	-0.00025153	-0.36292	-0.0001861	512.7877213537482	58.172	0.75426	58.172	57.818	58.572	0					54	16	5	0	0	0	0.40148	1	4914	4914		87.754	18.967	1	18828000			39133	33062	32299	32322	42467	42467					0.05056002119840741
NAGCPGPLL	9	Unmodified	_NAGCPGPLL_					0	0	0			REV__ENST00000369660.8_1_X:153712621-153712969:-|nuORF	REV__ENST00000369660.8_1_X:153712621-153712969:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	420.2598876953125	2	421.215463	840.416374	0.77369	0.00032589	-3.8338	-0.0016148	-3.0601	-0.0012889	421.21369872913925	72.31	1.1088	72.31	72.086	73.195	0					40	27	3	0	0	0	0.027408	1	7064	7064		38.806	0	1	1448600	+		39134	24943	32300	32323	42468	42468					-0.01021802071500133
NAGNLIIL	8	Unmodified	_NAGNLIIL_					0	0	0		nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2;ENSG00000243232|ENST00000289269|PCDHAC2	nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2	nc|ENSG00000243232|Q9Y5I4-2|PCDHAC2	MULTI-MSMS	OvCa99_classI_Rep5	1	414.255615234375	2	414.252903	826.491253	1.3359	0.0005534	2.9962	0.0012412	4.3321	0.0017946	414.2539705763328	160.81	0.45187	160.81	160.61	161.06	0					15	8	2	0	0	0	0.69415	1	18868	18868		44.531	0	1	35322			39135	9373	32301	32324	42469	42469					0.07106703731381003
NAGRRPSE	8	Unmodified	_NAGRRPSE_					0	0	0			REV__ENST00000531690.5_1_6:1717847-1960173:-|nuORF	REV__ENST00000531690.5_1_6:1717847-1960173:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.23870849609375	2	443.728115	885.441677	2.9962	0.0013295	2.6745	0.0011867	5.6707	0.0025162	443.72905983462505	85.164	0.45963	85.164	84.963	85.422	0					16	10	2	0	0	0	0.028476	1	8922	8922		20.947	0	1	161910	+		39136	15773	32302	32325	42470	42470					-0.005626112247114179
NAGSNLLKLL	10	Unmodified	_NAGSNLLKLL_					0	0	0			REV__HERVH-int_dup395|chr1:229174781-229177850:+|1.6476935486843904|0.2234293350488721|2.88|410.0|21|1|sense	REV__HERVH-int_dup395|chr1:229174781-229177850:+|1.6476935486843904|0.2234293350488721|2.88|410.0|21|1|sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.829345703125	2	521.816399	1041.61824	0.43591	0.00022746	-1.6895	-0.00088159	-1.2536	-0.00065413	521.8157673774872	106.37	0.52124	105.11	104.85	105.37	-1.267					13	9	2	0	0	0	0.026849	1	7508	7508		19.104	0	1	24227	+		39137	28234	32303	32326	42471	42471					0.09910004885705348
NAGTFGIF	8	Unmodified	_NAGTFGIF_					0	0	0		tr|A0A553SUA4|A0A553SUA4_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_06650PE=3SV=1	tr|A0A553SUA4|A0A553SUA4_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_06650PE=3SV=1	tr|A0A553SUA4|A0A553SUA4_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_06650PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.20721435546875	2	413.708328	825.402104	2.9301	0.0012122	-0.34475	-0.00014263	2.5853	0.0010696	413.708045483506	80.713	0.59447	80.713	80.399	80.993	0					17	13	2	0	0	0	0.028476	1	8245	8245		24.203	2.2429	1	215380			39138	34590	32304	32327	42472	42472					-0.017581312281322425
NAGVEEIE	8	Unmodified	_NAGVEEIE_					0	0	0			REV__tr|A0A7D6W134|A0A7D6W134_9CLOTGalactitol-1-phosphate5-dehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01695PE=3SV=1	REV__tr|A0A7D6W134|A0A7D6W134_9CLOTGalactitol-1-phosphate5-dehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01695PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	430.2174072265625	2	430.70344	859.392327	-0.81962	-0.00035301	0.97282	0.000419	0.1532	6.5983E-05	430.70375817954425	36.862	0.3619	36.862	36.707	37.069	0					9	7	2	0	0	0	0.028476	1	1979	1979		26.693	3.6504	1	53817	+		39139	31874	32305	32328	42473	42473					-0.0429936402418889
NAIDLQLMS	9	Oxidation (M)	_NAIDLQLM(Oxidation (M))S_		NAIDLQLM(1)S		NAIDLQLM(80)S	0	0	1		tr|A0A553SHX2|A0A553SHX2_NIACIPTStrehalosetransportersubunitIIBCOS=NialliacirculansOX=1397GN=treBPE=4SV=1	tr|A0A553SHX2|A0A553SHX2_NIACIPTStrehalosetransportersubunitIIBCOS=NialliacirculansOX=1397GN=treBPE=4SV=1	tr|A0A553SHX2|A0A553SHX2_NIACIPTStrehalosetransportersubunitIIBCOS=NialliacirculansOX=1397GN=treBPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	510.3100280761719	2	510.755149	1019.49575	1.0956	0.00055959	1.9264	0.00098391	3.022	0.0015435	510.7558642994904	127.21	0.57074	126.13	126.02	126.59	-1.0715					13	10	2	0	0	0	0.027247	1	10008	10008		79.713	19.309	1	26850			39140	33322	32306	32329	42474	42474		733			-0.013221999080201385
NAIEKQKP	8	Unmodified	_NAIEKQKP_					0	0	0		nc|ENSG00000107263|Q13905-3|RAPGEF1	nc|ENSG00000107263|Q13905-3|RAPGEF1	nc|ENSG00000107263|Q13905-3|RAPGEF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.280029296875	2	464.266542	926.51853	1.563	0.00072565	-2.47	-0.0011468	-0.90703	-0.0004211	464.26510572147924	81.722	0.2813	81.722	81.613	81.895	0					15	6	3	0	0	0	0.028476	1	8441	8441		26.796	6.3143	1	316830			39141	14946	32307	32330	42475	42475					0.052331872717559236
NAIKLFYFI	9	Unmodified	_NAIKLFYFI_					0	0	0			REV__ENSG00000121318|ENST00000240619|TAS2R10	REV__ENSG00000121318|ENST00000240619|TAS2R10	MULTI-MSMS	OvCa99_classI_Rep5	1	564.8264770507812	2	564.826235	1127.63792	1.5803	0.00089257	0.28901	0.00016324	1.8693	0.0010558	564.8263145460398	146.1	0.59872	146.1	145.83	146.43	0					23	11	3	0	0	0	0.6653	1	17091	17091		24.203	0	1	111190	+		39142	18540	32308	32331	42476	42476					0.0792038089646212
NAIPMNKAN	9	Unmodified	_NAIPMNKAN_					0	0	0		ENSG00000109265|ENST00000682029|CRACD	ENSG00000109265|ENST00000682029|CRACD	ENSG00000109265|ENST00000682029|CRACD	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.3052978515625	2	486.750201	971.48585	-1.6231	-0.00079004	-3.4312	-0.0016702	-5.0543	-0.0024602	486.74882032805476	126.87	0.54603	125.43	125.29	125.84	-1.4357					12	10	2	0	0	0	0.027433	1	12076	12076		60.972	15.02	1	11444			39143	2705	32309	32332	42477	42477					-0.001033431227483561
NAIPTSRSL	9	Unmodified	_NAIPTSRSL_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MULTI-MSMS	OvCa99_classI_Rep5	1	479.7706604003906	2	479.769448	957.524344	-0.44511	-0.00021355	0.3484	0.00016715	-0.096714	-4.64E-05	479.7695063523144	61.396	1.0968	61.396	60.772	61.869	0					47	25	4	0	0	0	0.14855	1	5402	5402		85.161	13.283	1	5722100			39144	2201	32310	32333	42478	42478					0.04388285783431911
NAISIVKP	8	Unmodified	_NAISIVKP_					0	0	0			REV__nc|ENSG00000121380|Q9BZR8-2|BCL2L14	REV__nc|ENSG00000121380|Q9BZR8-2|BCL2L14	MULTI-MSMS	OvCa9_classI_Rep2	2	421.2589416503906	2	421.260728	840.506903	0.30073	0.00012669	-3.3692	-0.0014193	-3.0685	-0.0012926	421.25922240366054	134.3	0.7355	134.07	133.56	134.29	-0.22696					27	14	2	0	0	0	0.7549	1	13307	13307		24.203	1.1603	1	153990	+		39145	18542	32311	32334	42479	42479					0.08026990248424681
NAITVVVVI	9	Unmodified	_NAITVVVVI_					0	0	0		tr|A0A553SU15|A0A553SU15_NIACITransportpermeaseproteinOS=NialliacirculansOX=1397GN=CEQ21_06050PE=3SV=1	tr|A0A553SU15|A0A553SU15_NIACITransportpermeaseproteinOS=NialliacirculansOX=1397GN=CEQ21_06050PE=3SV=1	tr|A0A553SU15|A0A553SU15_NIACITransportpermeaseproteinOS=NialliacirculansOX=1397GN=CEQ21_06050PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.2798156738281	2	464.29731	926.580068	1.3229	0.0006142	4.1715	0.0019368	5.4944	0.002551	464.29888306500453	81.673	0.48264	81.673	81.372	81.854	0					18	11	2	0	0	0	0.027462	1	8383	8383		31.955	15.482	1	181700			39146	34562	32312	32335	42480	42480					0.1138411897103424
NAKANKSILK	10	Unmodified	_NAKANKSILK_					0	0	0		tr|A0A7D6VSA5|A0A7D6VSA5_9CLOTPhageportalproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10175PE=4SV=1	tr|A0A7D6VSA5|A0A7D6VSA5_9CLOTPhageportalproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10175PE=4SV=1	tr|A0A7D6VSA5|A0A7D6VSA5_9CLOTPhageportalproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10175PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	543.8373413085938	2	543.835123	1085.65569	1.8911	0.0010285	4.2464	0.0023094	6.1375	0.0033378	543.8371630930505	122.36	1.2423	122.36	121.99	123.23	0					53	26	3	0	0	0	0.48398	1	14096	14096		56.434	5.0983	1	712810			39147	35005	32313	32336	42481	42481					0.11629096151318663
NAKHIQTSRH	10	Unmodified	_NAKHIQTSRH_					0	0	0			REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|20|1|sense	REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|20|1|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	596.3194580078125	2	596.320703	1190.62685	2.7457	0.0016373	-2.6043	-0.001553	0.14143	8.4335E-05	596.3187740555462	59.544	1.1484	56.445	56.094	57.243	-3.0993					41	33	2	0	0	0	0.73378	1	1956	1956		26.693	4.1133	1	42551	+		39148	28468	32314	32337	42482	42482					0.0391637157488276
NAKLLADKS	9	Unmodified	_NAKLLADKS_					0	0	0			REV__tr|A0A7D6VRJ8|A0A7D6VRJ8_9CLOTClassIIaldolase/adducinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01715PE=4SV=1	REV__tr|A0A7D6VRJ8|A0A7D6VRJ8_9CLOTClassIIaldolase/adducinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01715PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.63226318359375	2	480.279649	958.544745	-0.26668	-0.00012808	-0.57086	-0.00027417	-0.83754	-0.00040225	480.2792267384222	29.606	0.39824	29.606	29.436	29.835	0					13	7	3	0	0	0	0.027462	1	1069	1069		16.473	3.0191	1	27409	+		39149	31422	32315	32338	42483	42483					0.06381456443239131
NAKTLKGNL	9	Unmodified	_NAKTLKGNL_					0	0	0		tr|A0A7D6VP34|A0A7D6VP34_9CLOTGTPdiphosphokinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15075PE=3SV=1	tr|A0A7D6VP34|A0A7D6VP34_9CLOTGTPdiphosphokinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15075PE=3SV=1	tr|A0A7D6VP34|A0A7D6VP34_9CLOTGTPdiphosphokinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15075PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	480.2620849609375	2	479.787641	957.56073	-0.65141	-0.00031254	-0.63637	-0.00030532	-1.2878	-0.00061786	479.7876240996325	46.744	0.59589	44.034	43.794	44.39	-2.7097					16	11	2	0	0	0	0.027462	1	2803	2803		26.693	10.22	1	26852			39150	34746	32316	32339	42484	42484					0.0802516268013278
NALDFHAIV	9	Unmodified	_NALDFHAIV_					0	0	0			REV__tr|A0A553ST31|A0A553ST31_NIACICoFsynthetaseOS=NialliacirculansOX=1397GN=CEQ21_04270PE=4SV=1	REV__tr|A0A553ST31|A0A553ST31_NIACICoFsynthetaseOS=NialliacirculansOX=1397GN=CEQ21_04270PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.3050231933594	2	500.266542	998.51853	-0.92736	-0.00046393	4.1544	0.0020783	3.2271	0.0016144	500.26870700860815	94.585	0.30146	92.69	92.46	92.762	-1.8956					7	5	2	0	0	0	0.027462	1	6108	6108		30.504	8.5438	1	7869.7	+		39151	30909	32317	32340	42485	42485					0.019211872717505685
NALEEPVFA	9	Unmodified	_NALEEPVFA_					0	0	0			REV__tr|A0A553SU25|A0A553SU25_NIACISDRfamilyNAD(P)-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06130PE=4SV=1	REV__tr|A0A553SU25|A0A553SU25_NIACISDRfamilyNAD(P)-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06130PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.287841796875	2	495.250557	988.486562	-0.44991	-0.00022282	-3.3026	-0.0016356	-3.7525	-0.0018584	495.2485399586101	103.79	0.31467	101.67	101.43	101.75	-2.1192					7	5	2	0	0	0	0.027462	1	9357	9357		30.504	2.6214	1	10114	+		39152	31033	32318	32341	42486	42486					-0.00814225202043417
NALFKLPPE	9	Unmodified	_NALFKLPPE_					0	0	0			REV__ENSG00000095209|ENST00000374692|TMEM38B	REV__ENSG00000095209|ENST00000374692|TMEM38B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.3217163085938	2	514.792392	1027.57023	0.11634	5.9891E-05	1.336	0.00068775	1.4523	0.00074764	514.7926043796666	122.8	1.3876	121.43	121.06	122.45	-1.3666					33	27	2	0	0	0	0.027453	1	11691	11691		54.776	15.523	1	22858	+		39153	17284	32319	32342	42487	42487					0.057549309656678815
NALFKLPPE	9	Unmodified	_NALFKLPPE_					0	0	0			REV__ENSG00000095209|ENST00000374692|TMEM38B	REV__ENSG00000095209|ENST00000374692|TMEM38B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.792392	1027.57023	-0.40789	-0.00020998	1.5472	0.00079649	1.1393	0.00058651	514.7928889126766	121.83	1.1381	121.63	121.3	122.43	-0.19718	0.10174	0.00013793	NaN	54.776	34	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16409	+		39154	17284	32319	32342							0.057549309656678815
NALGSLRSLM	10	Unmodified	_NALGSLRSLM_					0	0	0			REV__nc|ENSG00000173230|Q14789|GOLGB1	REV__nc|ENSG00000173230|Q14789|GOLGB1	MULTI-SECPEP	OvCa9_classI_Rep3	3	530.8165893554688	2	531.292233	1060.56991	0.41141	0.00021858	2.5856	0.0013737	2.997	0.0015923	531.2926225543104	72.084	0.1449	69.482	69.376	69.521	-2.6023					4	2	2	0	0	0	0.026734	1	3409	3409		39.253	11.371	1	7662.5	+		39155	21758	32320	32343	42488	42488					0.04205187974139335
NALIERLEDAP	11	Unmodified	_NALIERLEDAP_					0	0	0		nc|ENSG00000089250|P29475-2|NOS1;ENSG00000089250|ENST00000317775|NOS1;nc|ENSG00000089250|P29475-5|NOS1;nc|ENSG00000089250|P29475-3|NOS1	nc|ENSG00000089250|P29475-2|NOS1	nc|ENSG00000089250|P29475-2|NOS1	MULTI-MSMS	OvCa9_classI_Rep2	2	414.2242736816406	3	414.222582	1239.64592	2.4734	0.0010246	2.0235	0.00083816	4.4969	0.0018627	414.22336270707405	90.014	1.611	88.712	88.383	89.994	-1.302					93	31	4	0	0	0	0.71498	1	7951	7951		21.78	0	1	493150			39156	1818	32321	32344	42489	42489					0.035678633553061445
NALKLLAID	9	Unmodified	_NALKLLAID_					0	0	0			REV__ENSG00000215704|ENST00000375910|CELA2B	REV__ENSG00000215704|ENST00000375910|CELA2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.2961120605469	2	485.800217	969.585882	1.3451	0.00065347	0.14751	7.1661E-05	1.4926	0.00072513	485.80018279960575	83.128	1.064	83.128	82.736	83.801	0					45	24	3	0	0	0	0.027462	1	8720	8720		29.15	0	1	1273600	+		39157	19795	32322	32345	42490	42490					0.09987217482705546
NALLKTLLN	9	Unmodified	_NALLKTLLN_					0	0	0			REV__tr|A0A553SLD3|A0A553SLD3_NIACIATP-dependentDNAhelicaseOS=NialliacirculansOX=1397GN=CEQ21_20305PE=4SV=1	REV__tr|A0A553SLD3|A0A553SLD3_NIACIATP-dependentDNAhelicaseOS=NialliacirculansOX=1397GN=CEQ21_20305PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	500.312255859375	2	500.313492	998.612431	0.59332	0.00029685	-0.99705	-0.00049884	-0.40373	-0.00020199	500.3129079797688	127.44	1.7293	127.21	126.84	128.57	-0.2359					109	34	4	0	0	0	0.51865	1	12558	12558		40.778	3.6191	1	1360100	+		39158	30211	32323	32346	42491	42491					0.11306906374045411
NALLTKQKP	9	Unmodified	_NALLTKQKP_					0	0	0		tr|A0A553SG21|A0A553SG21_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09950PE=4SV=1	tr|A0A553SG21|A0A553SG21_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09950PE=4SV=1	tr|A0A553SG21|A0A553SG21_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09950PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	506.81121826171875	2	506.811116	1011.60768	-1.285	-0.00065125	-0.29635	-0.00015019	-1.5813	-0.00080144	506.8109472666925	100.58	3.0909	98.975	98.659	101.75	-1.6053					152	59	4	0	0	0	0.16562	1	6868	6868		82.241	0	1	2966100			39159	33107	32324	32347	42492	42492					0.1023402223128187
NALMKLEQP	9	Unmodified	_NALMKLEQP_					0	0	0			REV__tr|A0A553SR99|A0A553SR99_NIACISigmafactorregulatorC-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00600PE=4SV=1	REV__tr|A0A553SR99|A0A553SR99_NIACISigmafactorregulatorC-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00600PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.8209228515625	2	522.281334	1042.54812	-0.56405	-0.00029459	-1.9887	-0.0010387	-2.5528	-0.0013333	522.2801093883394	105.03	0.43785	105.03	104.83	105.27	0					19	9	3	0	0	0	0.027343	1	11779	11779		68.787	15.435	1	219900	+		39160	30709	32325	32348	42493	42493					0.02854383225599122
NALNEQRVE	9	Unmodified	_NALNEQRVE_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.K1766Qfs*38|1|0.11|ENSG00000137497|chr11:72007356-72007357|-/G|frameshift_variant;NUMA1|p.F1195Sfs*43|1|0.13|ENSG00000137497|chr11:72013921-72013921|G/-|frameshift_variant	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3123168945312	2	536.772719	1071.53089	-0.2296	-0.00012324	-3.5935	-0.0019289	-3.8231	-0.0020521	537.2737948949541	51.026	0.38805	51.026	50.819	51.207	0					15	8	3	0	0	0	0.027462	1	3898	3898		51.193	11.94	1	163440			39161	4591	32326	32349	42494	42494					-0.002018210558617284
NALNNSISD	9	Unmodified	_NALNNSISD_					0	0	0			REV__tr|A0A7D6ZF83|A0A7D6ZF83_9CLOTFlagellarbasalbodyrodproteinFlgGOS=ClostridiumintestinaleOX=36845GN=flgGPE=3SV=1	REV__tr|A0A7D6ZF83|A0A7D6ZF83_9CLOTFlagellarbasalbodyrodproteinFlgGOS=ClostridiumintestinaleOX=36845GN=flgGPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	473.2838134765625	2	474.225071	946.435589	-0.43685	-0.00020717	-0.2416	-0.00011457	-0.67845	-0.00032174	474.22481365011294	86.369	1.2847	84.879	84.146	85.431	-1.4907					59	24	3	0	0	0	0.027403	1	7534	7534		60.118	17.722	1	83706	+		39162	31960	32327	32350	42495	42495					-0.03977174246904269
NALREYHSRLD	11	Unmodified	_NALREYHSRLD_					0	0	0			REV__nc|ENSG00000126775|Q6ZNE5-2|ATG14	REV__nc|ENSG00000126775|Q6ZNE5-2|ATG14	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.7322082519531	3	458.568863	1372.68476	0.0023474	1.0765E-06	-0.79049	-0.0003625	-0.78815	-0.00036142	458.5685846531508	47.02	0.39948	47.02	46.809	47.208	0					13	8	2	0	0	0	0.02595	1	3356	3356		15.921	7.1213	1	56877	+		39163	18794	32328	32351	42496	42496					0.013325887096470979
NALVCVKLT	9	Unmodified	_NALVCVKLT_					0	0	0			REV__ENST00000261226.8_1_12:94964130-94964496:-|nuORF	REV__ENST00000261226.8_1_12:94964130-94964496:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.2626647949219	2	480.78097	959.547388	-0.34723	-0.00016694	-0.88939	-0.0004276	-1.2366	-0.00059454	480.7806588070826	46.821	0.56486	43.749	43.552	44.117	-3.0724					17	10	3	0	0	0	0.027411	1	2512	2512		64.207	35.058	1	23916	+		39164	23941	32329	32352	42497	42497					0.06599588576523274
NALVCVKLT	9	Unmodified	_NALVCVKLT_					0	0	0			REV__ENST00000261226.8_1_12:94964130-94964496:-|nuORF	REV__ENST00000261226.8_1_12:94964130-94964496:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	480.78097	959.547388	-0.6332	-0.00030443	2.0611	0.00099092	1.4279	0.00068649	480.7811589572131	46.607	0.29749	43.897	43.696	43.993	-2.7097	0.074093	0.001525	NaN	64.207	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4913.8	+		39165	23941	32329	32352							0.06599588576523274
NALVIHQS	8	Unmodified	_NALVIHQS_					0	0	0		ENSG00000230549|ENST00000529559|USP17L1;ENSG00000225327|ENST00000530484|USP17L3	ENSG00000230549|ENST00000529559|USP17L1	ENSG00000230549|ENST00000529559|USP17L1	MULTI-MSMS	OvCa9_classI_Rep4_	4	441.24676513671875	2	441.245609	880.476666	-1.1273	-0.00049742	1.1173	0.00049299	-0.010039	-4.4297E-06	441.2459200057678	55.071	2.0848	51.824	51.336	53.421	-3.2474					67	40	2	0	0	0	0.60899	1	3455	3455		62.107	8.756	1	232180			39166	9261	32330	32353	42498	42498					0.03164631583240407
NANATIIKIKD	11	Unmodified	_NANATIIKIKD_					0	0	0			REV__tr|A0A7D6ZXB3|A0A7D6ZXB3_9CLOTDUF3048domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21105PE=4SV=1	REV__tr|A0A7D6ZXB3|A0A7D6ZXB3_9CLOTDUF3048domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21105PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	400.9039306640625	3	400.903072	1199.68739	1.5024	0.00060231	-0.17635	-7.0699E-05	1.326	0.00053161	400.90292600944275	31.683	0.34744	31.683	31.509	31.857	0					16	6	3	0	0	0	0.70372	1	1327	1327		28.384	2.4921	1	207620	+		39167	32324	32331	32354	42499	42499					0.09553044114591103
NANFRSFIF	9	Unmodified	_NANFRSFIF_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.7651977539062	2	558.285266	1114.55598	2.2123	0.0012351	4.1793	0.0023332	6.3915	0.0035683	558.2872961669822	128.35	0.84126	128.35	127.86	128.7	0					27	17	2	0	0	0	0.027462	1	14867	14867		40.778	5.1599	1	99991			39168	4134	32332	32355	42500	42500					0.0032827853738126578
NANIILRIP	9	Unmodified	_NANIILRIP_					0	0	0			REV__ENST00000513432.5_1_18:13059017-13124766:+|nuORF	REV__ENST00000513432.5_1_18:13059017-13124766:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	512.3187255859375	2	512.319109	1022.62366	-1.0601	-0.00054311	0.66174	0.00033902	-0.39836	-0.00020409	512.3193628969464	54.362	1.9918	51.548	51.075	53.067	-2.8139					110	39	4	0	0	0	0.48324	1	3755	3755		44.117	3.5442	1	832500	+		39169	17510	32333	32356	42501	42501					0.11325728468182206
NANLECKKSET	11	Unmodified	_NANLECKKSET_					0	0	0			REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	MULTI-SECPEP	OvCa99_classI_Rep5	1	619.3812866210938	2	618.798077	1235.5816	0.42471	0.00026281	-4.0035	-0.0024774	-3.5788	-0.0022146	618.7953779777166	103.34	0.67316	103.34	103.1	103.77	0					28	15	3	0	0	0	0.025508	1	11519	11519		27.644	0	1	704400	+		39170	23220	32334	32357	42502	42502					-0.026766597931555225
NANSVKKIK	9	Unmodified	_NANSVKKIK_					0	0	0			REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	REV__ENST00000399586.2_1_X:74960734-74966719:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	501.3092041015625	2	501.308741	1000.60293	2.1155	0.0010605	-2.836	-0.0014217	-0.72057	-0.00036123	501.3069710987831	110.61	0.88888	110.61	110.35	111.24	0					43	19	3	0	0	0	0.22621	1	12576	12576		71.877	2.2498	1	1666100	+		39171	25391	32335	32358	42503	42503					0.10265138088527692
NAPTFRFAE	9	Unmodified	_NAPTFRFAE_					0	0	0			REV__sp|P16758|UL20_HCMVAUncharacterizedproteinUL20OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL20PE=3SV=1	REV__sp|P16758|UL20_HCMVAUncharacterizedproteinUL20OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL20PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	526.7627563476562	2	526.761623	1051.50869	-1.1915	-0.00062765	4.2023	0.0022136	3.0108	0.0015859	526.7636529760721	120.92	1.9767	120.72	120.16	122.14	-0.19718					97	39	4	0	0	0	0.56889	1	11643	11643		35.618	2.1027	1	267620	+		39172	29426	32336	32359	42504	42504					-0.015000007336084309
NAPTLADL	8	Unmodified	_NAPTLADL_					0	0	0		nc|ENSG00000134779|Q68CL5-3|TPGS2;ENSG00000134779|ENST00000334295|TPGS2;nc|ENSG00000134779|Q68CL5-5|TPGS2	nc|ENSG00000134779|Q68CL5-3|TPGS2	nc|ENSG00000134779|Q68CL5-3|TPGS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.2298278808594	2	407.718893	813.423233	3.3421	0.0013627	4.0854	0.0016657	7.4275	0.0030284	407.7204478919786	84.957	0.36893	84.957	84.758	85.127	0					14	8	2	0	0	0	0.028476	1	8902	8902		44.117	5.3107	1	345290			39173	4328	32337	32360	42505	42505					0.009058340807087006
NAQLLCTQP	9	Unmodified	_NAQLLCTQP_					0	0	0		SEMA4A|p.K288N|1|0.28|ENSG00000196189|chr1:156161399-156161399|G/T|missense_variant	SEMA4A|p.K288N|1|0.28|ENSG00000196189|chr1:156161399-156161399|G/T|missense_variant	SEMA4A|p.K288N|1|0.28|ENSG00000196189|chr1:156161399-156161399|G/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.3244934082031	2	494.250034	986.485516	-0.2233	-0.00011037	0.37518	0.00018543	0.15188	7.5067E-05	494.2496910314788	79.525	0.42341	76.774	76.562	76.986	-2.7514					13	8	2	0	0	0	0.027433	1	6445	6445		54.776	0	1	24086			39174	32808	32338	32361	42506	42506					-0.008267628425983276
NAQPIETLES	10	Unmodified	_NAQPIETLES_					0	0	0		tr|A0A553SFF6|A0A553SFF6_NIACIHeavy-metal-associateddomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_08690PE=4SV=1	tr|A0A553SFF6|A0A553SFF6_NIACIHeavy-metal-associateddomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_08690PE=4SV=1	tr|A0A553SFF6|A0A553SFF6_NIACIHeavy-metal-associateddomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_08690PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.970947265625	2	551.274761	1100.53497	1.8789	0.0010358	3.9517	0.0021785	5.8306	0.0032143	551.2765656604087	95.649	0.62908	95.649	95.41	96.039	0					23	14	2	0	0	0	0.026849	1	10466	10466		25.574	0	1	449570			39175	33034	32339	32362	42507	42507					-0.011277763528141804
NASVANSH	8	Unmodified	_NASVANSH_					0	0	0			REV__tr|A0A553SNF2|A0A553SNF2_NIACIBaseplateproteinJ-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24370PE=4SV=1	REV__tr|A0A553SNF2|A0A553SNF2_NIACIBaseplateproteinJ-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24370PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.8827819824219	2	400.188291	798.36203	1.4621	0.0005851	4.3239	0.0017304	5.786	0.0023155	400.18981046587453	46.755	0.53093	46.755	46.545	47.076	0					16	11	2	0	0	0	0.028476	1	3353	3353		29.15	3.6994	1	239590	+		39176	30416	32340	32363	42508	42508					-0.04521677898719645
NATLDLIEG	9	Unmodified	_NATLDLIEG_					0	0	0		ENSG00000111615|ENST00000229214|KRR1;ENST00000550898.1_1_12:75900510-75905383:-|nuORF;ENST00000550023.5_1_12:75900251-75905383:-|nuORF;nc|ENSG00000111615|Q13601-2|KRR1	ENSG00000111615|ENST00000229214|KRR1	ENSG00000111615|ENST00000229214|KRR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.2769775390625	2	473.248015	944.481476	0.20325	9.6187E-05	-1.5244	-0.00072144	-1.3212	-0.00062526	473.24729382705783	63.173	0.9615	59.698	59.242	60.204	-3.475					31	19	2	0	0	0	0.027426	1	4383	4383		53.351	9.2347	1	150850			39177	2833	32341	32364	42509	42509					0.00701470935348425
NATLDLIEG	9	Unmodified	_NATLDLIEG_					0	0	0		ENSG00000111615|ENST00000229214|KRR1;ENST00000550898.1_1_12:75900510-75905383:-|nuORF;ENST00000550023.5_1_12:75900251-75905383:-|nuORF;nc|ENSG00000111615|Q13601-2|KRR1	ENSG00000111615|ENST00000229214|KRR1	ENSG00000111615|ENST00000229214|KRR1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	473.248015	944.481476	-1.9146	-0.00090606	0.88039	0.00041664	-1.0342	-0.00048942	473.24823989193476	62.565	0.87085	59.82	59.449	60.32	-2.7445	0.060988	0.00089602	NaN	53.351	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21870			39178	2833	32341	32364							0.00701470935348425
NAVAFIRNFPQ	11	Unmodified	_NAVAFIRNFPQ_					0	0	0		ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	ENSG00000135776|ENST00000344517|ABCB10	MULTI-MSMS	OvCa9_classI_Rep3	3	638.8445434570312	2	638.843479	1275.67241	-0.72166	-0.00046103	0.68613	0.00043833	-0.035522	-2.2693E-05	638.8438331848862	101.97	1.8306	100.44	99.845	101.68	-1.5211					95	34	5	0	0	0	0.61983	1	7003	7003		42.864	7.246	1	808980			39179	4415	32342	32365	42510	42510					0.04559597037268759
NAVLTHSVPI	10	Unmodified	_NAVLTHSVPI_					0	0	0			REV__nc|ENSG00000169876|Q685J3-2|MUC17	REV__nc|ENSG00000169876|Q685J3-2|MUC17	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.7684326171875	2	525.800749	1049.58694	1.8119	0.0009527	1.3885	0.00073008	3.2004	0.0016828	525.8010894401871	85.715	0.28737	85.715	85.624	85.912	0					10	6	2	0	0	0	0.026891	1	9034	9034		31.53	3.6476	1	230670	+		39180	21490	32343	32366	42511	42511					0.06413431851615314
NAVLVSPLL	9	Unmodified	_NAVLVSPLL_					0	0	0		tr|A0A7D6VY30|A0A7D6VY30_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15200PE=3SV=1	tr|A0A7D6VY30|A0A7D6VY30_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15200PE=3SV=1	tr|A0A7D6VY30|A0A7D6VY30_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15200PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.2798156738281	2	463.289485	924.564418	0.57955	0.0002685	1.7873	0.00082805	2.3669	0.0010965	463.2901805070148	81.297	0.45642	81.297	81.037	81.493	0					17	10	2	0	0	0	0.027462	1	8383	8383		35.618	19.145	1	453560			39181	35313	32344	32367	42512	42512					0.09911832453997249
NAVLVSPLL	9	Unmodified	_NAVLVSPLL_					0	0	0		tr|A0A7D6VY30|A0A7D6VY30_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15200PE=3SV=1	tr|A0A7D6VY30|A0A7D6VY30_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15200PE=3SV=1	tr|A0A7D6VY30|A0A7D6VY30_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15200PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	462.77874755859375	2	463.289485	924.564418	1.3954	0.00064646	1.6308	0.00075551	3.0261	0.001402	463.29061865659514	112.76	0.7848	111.68	111.32	112.1	-1.0753					22	15	2	0	0	0	0.027462	1	8208	8208		11.511	0	1	50712			39182	35313	32344	32367	42513	42513					0.09911832453997249
NAVLVSPLL	9	Unmodified	_NAVLVSPLL_					0	0	0		tr|A0A7D6VY30|A0A7D6VY30_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15200PE=3SV=1	tr|A0A7D6VY30|A0A7D6VY30_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15200PE=3SV=1	tr|A0A7D6VY30|A0A7D6VY30_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15200PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.2803039550781	2	463.289485	924.564418	-0.3876	-0.00017957	0.94267	0.00043673	0.55507	0.00025716	463.28975012433455	83.387	0.77895	80.724	80.486	81.265	-2.6629					29	15	2	0	0	0	0.027462	1	6973	6973		42.396	6.7778	1	42906			39183	35313	32344	32367	42514	42514					0.09911832453997249
NAVRSMEKV	9	Unmodified	_NAVRSMEKV_					0	0	0		nc|ENSG00000068024|P56524-2|HDAC4;nc|ENSG00000068024|P56524|HDAC4;ENSG00000068024|ENST00000543185|HDAC4	nc|ENSG00000068024|P56524-2|HDAC4	nc|ENSG00000068024|P56524-2|HDAC4	MULTI-MSMS	OvCa99_classI_Rep5	1	517.2779541015625	2	517.276583	1032.53861	1.6827	0.00087042	1.2348	0.00063873	2.9175	0.0015092	517.2771102079932	106.03	0.70165	106.03	105.66	106.36	0					24	15	2	0	0	0	0.22621	1	11923	11923		71.877	4.3838	1	1340400			39184	1384	32345	32368	42515	42515					0.02364614940051979
NAVYSIHLL	9	Unmodified	_NAVYSIHLL_					0	0	0			REV__ENSG00000156869|ENST00000646001|FRRS1	REV__ENSG00000156869|ENST00000646001|FRRS1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.2896728515625	2	515.290017	1028.56548	2.108	0.0010862	0.70004	0.00036072	2.808	0.001447	515.2901134587047	98.767	0.53001	98.767	98.506	99.036	0					29	12	3	0	0	0	0.51865	1	10892	10892		40.778	0	1	2177600	+		39185	20499	32346	32369	42516	42516					0.05234046822920391
NAYTTTAIN	9	Unmodified	_NAYTTTAIN_					0	0	0		nc|ENSG00000143036|Q8N4M1-5|SLC44A3;nc|ENSG00000143036|Q8N4M1-4|SLC44A3;nc|ENSG00000143036|Q8N4M1-2|SLC44A3;nc|ENSG00000143036|Q8N4M1-3|SLC44A3;nc|ENSG00000143036|Q8N4M1-6|SLC44A3;ENSG00000143036|ENST00000271227|SLC44A3	nc|ENSG00000143036|Q8N4M1-5|SLC44A3	nc|ENSG00000143036|Q8N4M1-5|SLC44A3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.23681640625	2	484.737814	967.461075	-1.5099	-0.00073189	0.84288	0.00040858	-0.66698	-0.00032331	484.7380823380431	119.56	1.465	118.22	117.88	119.35	-1.3444					34	27	2	0	0	0	0.027433	1	11291	11291		45.972	12.457	1	74833			39186	5007	32347	32370	42517	42517					-0.023956997244908962
NAYTTTAIN	9	Unmodified	_NAYTTTAIN_					0	0	0		nc|ENSG00000143036|Q8N4M1-5|SLC44A3;nc|ENSG00000143036|Q8N4M1-4|SLC44A3;nc|ENSG00000143036|Q8N4M1-2|SLC44A3;nc|ENSG00000143036|Q8N4M1-3|SLC44A3;nc|ENSG00000143036|Q8N4M1-6|SLC44A3;ENSG00000143036|ENST00000271227|SLC44A3	nc|ENSG00000143036|Q8N4M1-5|SLC44A3	nc|ENSG00000143036|Q8N4M1-5|SLC44A3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	484.737814	967.461075	0.10613	5.1445E-05	-0.78254	-0.00037933	-0.67641	-0.00032788	484.7374135202206	119.3	0.69554	118.27	117.88	118.58	-1.0271	-0.004905	-0.0011473	NaN	45.972	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36877			39187	5007	32347	32370							-0.023956997244908962
NCDLRRILV	9	Unmodified	_NCDLRRILV_					0	0	0			REV__ENSG00000082996|ENST00000392894|RNF13	REV__ENSG00000082996|ENST00000392894|RNF13	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.3580322265625	2	551.3135	1100.61245	-0.12831	-7.074E-05	2.1373	0.0011783	2.009	0.0011076	551.3145378473448	123.38	0.78999	122.01	121.85	122.64	-1.3666					20	15	2	0	0	0	0.027462	1	11743	11743		16.473	1.7795	1	26693	+		39188	17092	32348	32371	42518	42518					0.06616583102390905
NCEDVNTCS	9	Unmodified	_NCEDVNTCS_					0	0	0			REV__ENSG00000196109|ENST00000397121|ZNF676	REV__ENSG00000196109|ENST00000397121|ZNF676	MULTI-MSMS	OvCa9_classI_Rep2	2	492.6737060546875	2	492.673499	983.332445	1.0002	0.00049275	-0.29943	-0.00014752	0.70074	0.00034523	492.6731945248339	43.642	1.6403	40.932	40.608	42.248	-2.7097					71	32	3	0	0	0	0.63254	1	2431	2431		28.081	2.6313	1	178770	+		39189	22782	32349	32372	42519	42519					-0.1598874602136675
NCEDVNTCS	9	Unmodified	_NCEDVNTCS_					0	0	0			REV__ENSG00000196109|ENST00000397121|ZNF676	REV__ENSG00000196109|ENST00000397121|ZNF676	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	492.673499	983.332445	1.0002	0.00049275	-0.29943	-0.00014752	0.70074	0.00034523	492.6731945248339	43.642	1.6403	40.932	40.608	42.248	-2.7097	0	0	NaN	28.081	71	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178770	+		39190	22782	32349	32372							-0.1598874602136675
NCIKRLAI	8	Unmodified	_NCIKRLAI_					0	0	0			REV__ENSG00000225830|ENST00000355832|ERCC6	REV__ENSG00000225830|ENST00000355832|ERCC6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.7532043457031	2	465.781305	929.548056	-0.19775	-9.2108E-05	0.9572	0.00044584	0.75945	0.00035374	465.7799624211515	47.132	0.41149	44.06	43.911	44.322	-3.0724					10	7	2	0	0	0	0.028476	1	2534	2534		60.294	0	1	12317	+		39191	23366	32350	32373	42520	42520					0.08046428016234586
NCILKLLSP	9	Unmodified	_NCILKLLSP_					0	0	0			REV__tr|A0A7D6VW89|A0A7D6VW89_9CLOTAbrBfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03130PE=4SV=1	REV__tr|A0A7D6VW89|A0A7D6VW89_9CLOTAbrBfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03130PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.7949523925781	2	500.79662	999.578688	0.3476	0.00017408	-4.239	-0.0021229	-3.8914	-0.0019488	500.79446400604274	110.01	4.1489	108.41	107.65	111.8	-1.6011					189	79	5	0	0	0	0.42676	1	10145	10145		49.442	1.7842	1	2535700	+		39192	31742	32351	32374	42521	42521					0.07888161610628686
NCIPERGLV	9	Unmodified	_NCIPERGLV_					0	0	0		tr|A0A553SGR0|A0A553SGR0_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11325PE=4SV=1	tr|A0A553SGR0|A0A553SGR0_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11325PE=4SV=1	tr|A0A553SGR0|A0A553SGR0_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11325PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.2962646484375	2	500.765852	999.51715	-0.88021	-0.00044078	-2.2686	-0.001136	-3.1488	-0.0015768	500.76460725359965	88.024	0.71287	85.894	85.7	86.413	-2.1309					22	13	2	0	0	0	0.027455	1	5329	5329		34.173	0	1	76174			39193	33182	32352	32375	42522	42522					0.017372299113617373
NCKFPIESI	9	Unmodified	_NCKFPIESI_					0	0	0			REV__XPOT-C12orf56|2|fusion	REV__XPOT-C12orf56|2|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.2745361328125	2	525.76806	1049.52157	-0.93162	-0.00048981	4.1991	0.0022078	3.2675	0.001718	525.77010033749	94.388	1.4459	91.92	91.666	93.111	-2.4685					44	28	3	0	0	0	0.027047	1	8360	8360		76.774	17.992	1	105300	+		39194	22493	32353	32376	42523	42523					-0.001213056657661582
NCKRLIIE	8	Carbamidomethyl (C)	_NC(Carbamidomethyl (C))KRLIIE_	NC(1)KRLIIE		NC(85)KRLIIE		0	1	0			REV__nc|ENSG00000058668|P23634-5|ATP2B4	REV__nc|ENSG00000058668|P23634-5|ATP2B4	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.2911987304688	2	523.294776	1044.575	-0.32968	-0.00017252	-3.6778	-0.0019246	-4.0074	-0.0020971	523.2926728380099	142.51	1.1112	141.07	140.73	141.84	-1.4427					47	21	3	0	0	0	0.42208	1	13982	13982		85.359	14.543	1	70578	+		39195	16729	32354	32377	42524	42524	190				0.05449491836770903
NCLMDFLGECE	11	Unmodified	_NCLMDFLGECE_					0	0	0		ENST00000446499.1_1_1:46898163-46898747:+|nuORF	ENST00000446499.1_1_1:46898163-46898747:+|nuORF	ENST00000446499.1_1_1:46898163-46898747:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	636.7639770507812	2	637.248517	1272.48248	0.70659	0.00045027	-3.3628	-0.002143	-2.6562	-0.0016927	637.2463048389966	162.22	0.35342	162.22	162.02	162.38	0					11	6	2	0	0	0	0.026099	1	19006	19006		14.137	0	1	18628			39196	11995	32355	32378	42525	42525					-0.14286142073910924
NCPTLAVQL	9	Unmodified	_NCPTLAVQL_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;TRIP12-MFI2|1|fusion;ENST00000479037.5_1_2:230672327-230744801:-|nuORF	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MSMS	OvCa99_classI_Rep5	1	479.75543212890625	2	479.754953	957.495352	1.608	0.00077143	-3.2764	-0.0015718	-1.6684	-0.00080042	479.7533524119215	83.014	0.63918	83.014	82.824	83.463	0					24	14	2	0	0	0	0.22035	1	8630	8630		72.879	4.0331	1	739230			39197	5697	32356	32379	42526	42526					0.014904251627854137
NCPTLAVQL	9	Unmodified	_NCPTLAVQL_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;TRIP12-MFI2|1|fusion;ENST00000479037.5_1_2:230672327-230744801:-|nuORF	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MATCH	OvCa9_classI_Rep3	3		2	479.754953	957.495352	-0.73193	-0.00035115	-1.592	-0.00076377	-2.3239	-0.0011149	479.7541143152957	85.446	0.50111	83.226	83.035	83.536	-2.2204	0.10606	0.0012951	NaN	72.879	16	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27617			39198	5697	32356	32379							0.014904251627854137
NCSGDVFTALI	11	Carbamidomethyl (C)	_NC(Carbamidomethyl (C))SGDVFTALI_	NC(1)SGDVFTALI		NC(93)SGDVFTALI		0	1	0		ENSG00000182326|ENST00000360817|C1S;ENST00000463798.1_1_12:7171527-7172615:+|nuORF	ENSG00000182326|ENST00000360817|C1S	ENSG00000182326|ENST00000360817|C1S	MULTI-MSMS	OvCa99_classI_Rep5	1	598.7885131835938	2	598.784438	1195.55432	2.1721	0.0013006	3.5148	0.0021046	5.6869	0.0034052	598.7864076224172	110.33	1.0705	110.33	110.04	111.11	0					74	23	4	0	0	0	0.11855	1	12532	12532		93.143	10.903	1	5513400			39199	7994	32357	32380	42527	42527	79				-0.03563143333553853
NCSKMLSGLP	10	Unmodified	_NCSKMLSGLP_					0	0	0			REV__ENSG00000116726|ENST00000357726|PRAMEF12	REV__ENSG00000116726|ENST00000357726|PRAMEF12	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.7849731445312	2	525.259545	1048.50454	-0.6428	-0.00033764	-1.9548	-0.0010268	-2.5976	-0.0013644	525.2586500679294	102.6	0.47375	100.4	100.15	100.62	-2.1994					16	8	3	0	0	0	0.026849	1	9248	9248		40.778	11.629	1	9464.1	+		39200	18316	32358	32381	42528	42528					-0.017775495432033495
NCSPWLSCEE	10	Carbamidomethyl (C)	_NC(Carbamidomethyl (C))SPWLSCEE_	NC(1)SPWLSCEE		NC(72)SPWLSC(-72)EE		0	1	0		ENSG00000185900|ENST00000331373|POMK	ENSG00000185900|ENST00000331373|POMK	ENSG00000185900|ENST00000331373|POMK	MULTI-MSMS	OvCa99_classI_Rep5	1	612.7399291992188	2	612.736631	1223.45871	1.7857	0.0010942	3.8267	0.0023447	5.6124	0.0034389	612.7387354570175	107.19	0.75616	107.19	106.85	107.6	0					50	17	5	0	0	0	0.20801	1	12089	12089		93.195	18.94	2	5470300			39201	8299	32359	32382	42529	42529	85				-0.1440823951609218
NCSVRYDHYP	10	Unmodified	_NCSVRYDHYP_					0	0	0			REV__PXDN|p.Y1176S|1|0.22|ENSG00000130508|chr2:1648253-1648253|T/G|missense_variant	REV__PXDN|p.Y1176S|1|0.22|ENSG00000130508|chr2:1648253-1648253|T/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	627.2745971679688	2	627.272029	1252.52951	0.82367	0.00051667	2.6004	0.0016312	3.4241	0.0021478	627.2736883095587	33.578	2.7918	30.79	30.259	33.051	-2.7881					159	55	4	0	0	0	0.87743	1	979	979		9.1829	1.4926	1	159330	+		39202	29324	32360	32383	42530	42530					-0.08665778416275316
NCVYPKEAN	9	Unmodified	_NCVYPKEAN_					0	0	0			REV__nc|ENSG00000121406|Q6P9A3-2|ZNF549	REV__nc|ENSG00000121406|Q6P9A3-2|ZNF549	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.2928466796875	2	519.239667	1036.46478	0.75575	0.00039242	2.9521	0.0015329	3.7079	0.0019253	519.2412645226207	110.57	0.31576	109.43	109.14	109.45	-1.1444					8	5	2	0	0	0	0.027462	1	7988	7988		18.262	0	1	16120	+		39203	18544	32361	32384	42531	42531					-0.05199353222269565
NCWVVGFI	8	Carbamidomethyl (C)	_NC(Carbamidomethyl (C))WVVGFI_	NC(1)WVVGFI		NC(49)WVVGFI		0	1	0			REV__nc|ENSG00000143147|Q8N6U8-2|GPR161	REV__nc|ENSG00000143147|Q8N6U8-2|GPR161	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.74456787109375	2	497.744388	993.474223	-1.7249	-0.00085854	3.9377	0.00196	2.2128	0.0011014	497.74600821151574	126.98	1.2008	125.55	125.24	126.45	-1.4357					49	23	3	0	0	0	0.67106	1	12094	12094		49.211	8.4326	1	92115	+		39204	19819	32362	32385	42532	42532	217				-0.022775401460762623
NCYEPLPLSK	10	Carbamidomethyl (C)	_NC(Carbamidomethyl (C))YEPLPLSK_	NC(1)YEPLPLSK		NC(46)YEPLPLSK		0	1	0			REV__ENSG00000171988|ENST00000399262|JMJD1C	REV__ENSG00000171988|ENST00000399262|JMJD1C	MULTI-MSMS	OvCa99_classI_Rep5	1	610.8056640625	2	610.802631	1219.59071	2.4485	0.0014956	2.7538	0.001682	5.2023	0.0031776	610.8038131806195	121.95	0.6058	121.95	121.66	122.27	0					25	12	3	0	0	0	0.5635	1	14038	14038		46.457	10.01	1	180060	+		39205	21665	32363	32386	42533	42533	242				-0.010302664368509795
NDAESRKR	8	Unmodified	_NDAESRKR_					0	0	0		ENSG00000151502|ENST00000281187|VPS26B	ENSG00000151502|ENST00000281187|VPS26B	ENSG00000151502|ENST00000281187|VPS26B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.28912353515625	2	488.251954	974.489356	-2.1108	-0.0010306	4.2708	0.0020852	2.1601	0.0010547	488.2541010655377	49.468	0.30809	46.327	46.095	46.403	-3.1416					6	5	2	0	0	0	0.028476	1	2774	2774		26.693	11.051	1	20785			39206	5560	32364	32387	42534	42534					0.0010904297548677278
NDALIRKR	8	Unmodified	_NDALIRKR_					0	0	0			REV__L1MEg_dup1746|chr2:99099337-99100538:+|1.3153921071676258|0.3908750287807103|1.75|429.0|23|2|sense	REV__L1MEg_dup1746|chr2:99099337-99100538:+|1.3153921071676258|0.3908750287807103|1.75|429.0|23|2|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	493.2976379394531	2	493.298707	984.582862	3.1299	0.001544	-3.147	-0.0015524	-0.017108	-8.4391E-06	493.29693905803276	26.988	0.77444	24.278	24.097	24.871	-2.7097					47	21	3	0	0	0	0.75723	1	412	412		23.042	1.0826	1	72756	+		39207	28448	32365	32388	42535	42535					0.08995387148559075
NDAMVVSYSD	10	Unmodified	_NDAMVVSYSD_					0	0	0		tr|A0A553SJV8|A0A553SJV8_NIACISignalpeptidepeptidaseSppAOS=NialliacirculansOX=1397GN=sppAPE=3SV=1	tr|A0A553SJV8|A0A553SJV8_NIACISignalpeptidepeptidaseSppAOS=NialliacirculansOX=1397GN=sppAPE=3SV=1	tr|A0A553SJV8|A0A553SJV8_NIACISignalpeptidepeptidaseSppAOS=NialliacirculansOX=1397GN=sppAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7606201171875	2	550.731871	1099.44919	0.71769	0.00039526	2.3411	0.0012893	3.0588	0.0016846	550.7329002265008	153.5	0.63342	153.5	153.25	153.88	0					27	12	3	0	0	0	0.026994	1	18025	18025		25.574	8.2091	1	134950			39208	33546	32366	32389	42536	42536					-0.09655684529957398
NDAYGWSLI	9	Unmodified	_NDAYGWSLI_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.7787475585938	2	519.748182	1037.48181	0.84833	0.00044092	-3.1654	-0.0016452	-2.3171	-0.0012043	519.7468797852754	112.43	0.2959	112.31	112.18	112.48	-0.12174					5	3	2	0	0	0	0.027462	1	10644	10644		23.042	0	1	9984.2	+		39209	19860	32367	32390	42537	42537					-0.03543109344786899
NDCAVVYFR	9	Unmodified	_NDCAVVYFR_					0	0	0			REV__ENSG00000169397|ENST00000304639|RNASE3	REV__ENSG00000169397|ENST00000304639|RNASE3	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.81982421875	2	543.755484	1085.49641	0.51941	0.00028243	-4.0184	-0.002185	-3.499	-0.0019026	543.7541650964216	74.387	0.34601	74.387	74.095	74.441	0					12	8	2	0	0	0	0.027462	1	7324	7324		34.173	0.65696	1	254330	+		39210	21459	32368	32391	42538	42538					-0.04291360468300809
NDDFMNAR	8	Unmodified	_NDDFMNAR_					0	0	0		tr|A0A553SNW5|A0A553SNW5_NIACIAspartokinaseOS=NialliacirculansOX=1397GN=dapGPE=3SV=1	tr|A0A553SNW5|A0A553SNW5_NIACIAspartokinaseOS=NialliacirculansOX=1397GN=dapGPE=3SV=1	tr|A0A553SNW5|A0A553SNW5_NIACIAspartokinaseOS=NialliacirculansOX=1397GN=dapGPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	491.7819519042969	2	491.705991	981.397429	1.0339	0.0005084	-0.25053	-0.00012319	0.78341	0.00038521	491.70592541776267	70.919	0.57443	68.348	68.114	68.688	-2.5707					15	10	2	0	0	0	0.028476	1	5713	5713		30.504	0	1	18837			39211	33971	32369	32392	42539	42539					-0.09401383433214505
NDEIILQIG	9	Unmodified	_NDEIILQIG_					0	0	0			REV__tr|A0A7D6VRP6|A0A7D6VRP6_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07750PE=4SV=1	REV__tr|A0A7D6VRP6|A0A7D6VRP6_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07750PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.7960510253906	2	507.776939	1013.53933	0.42945	0.00021807	-0.035294	-1.7922E-05	0.39416	0.00020015	507.7766809653692	128.46	1.1852	127.36	127.12	128.31	-1.0933					32	23	3	0	0	0	0.027462	1	10128	10128		31.53	8.9502	1	26741	+		39212	31431	32370	32393	42540	42540					0.03309732860770964
NDELKIYF	8	Unmodified	_NDELKIYF_					0	0	0			REV__tr|A0A7D6VSY9|A0A7D6VSY9_9CLOTDNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18580PE=4SV=1	REV__tr|A0A7D6VSY9|A0A7D6VSY9_9CLOTDNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18580PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.2671508789062	2	521.266207	1040.51786	-1.2057	-0.00062851	2.104	0.0010967	0.89826	0.00046823	521.266661833476	88.878	1.4382	86.276	85.882	87.321	-2.6027					85	28	4	0	0	0	0.61758	1	7623	7623		60.294	3.5729	1	402370	+		39213	31557	32371	32394	42541	42541					-0.0007765216794268781
NDELKIYF	8	Unmodified	_NDELKIYF_					0	0	0			REV__tr|A0A7D6VSY9|A0A7D6VSY9_9CLOTDNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18580PE=4SV=1	REV__tr|A0A7D6VSY9|A0A7D6VSY9_9CLOTDNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18580PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.266207	1040.51786	1.9233	0.0010025	-1.4239	-0.00074224	0.49935	0.0002603	521.2651135973391	87.844	1.4254	86.413	85.791	87.217	-1.4311	0.076979	-0.0013225	NaN	60.294	88	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	204080	+		39214	31557	32371	32394							-0.0007765216794268781
NDELKIYF	8	Unmodified	_NDELKIYF_					0	0	0			REV__tr|A0A7D6VSY9|A0A7D6VSY9_9CLOTDNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18580PE=4SV=1	REV__tr|A0A7D6VSY9|A0A7D6VSY9_9CLOTDNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18580PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	521.266207	1040.51786	-0.3973	-0.0002071	1.5423	0.00080393	1.145	0.00059684	521.2663120882595	88.45	1.6372	86.319	85.7	87.337	-2.1309	-0.016736	0.0017698	NaN	60.294	97	32	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	386240	+		39215	31557	32371	32394							-0.0007765216794268781
NDELKIYF	8	Unmodified	_NDELKIYF_					0	0	0			REV__tr|A0A7D6VSY9|A0A7D6VSY9_9CLOTDNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18580PE=4SV=1	REV__tr|A0A7D6VSY9|A0A7D6VSY9_9CLOTDNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18580PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	521.266207	1040.51786	-1.2057	-0.00062851	2.104	0.0010967	0.89826	0.00046823	521.266661833476	88.878	1.4382	86.276	85.882	87.321	-2.6027	-0.060243	0.0023554	NaN	60.294	85	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	402370	+		39216	31557	32371	32394							-0.0007765216794268781
NDFLLKTSL	9	Unmodified	_NDFLLKTSL_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;VPS13B-CPQ|2|fusion;VPS13B-CPQ|1|fusion	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.7960815429688	2	525.795132	1049.57571	-1.5063	-0.00079198	1.3335	0.00070115	-0.17274	-9.0827E-05	525.795696675373	108.99	0.60649	107.26	107.02	107.63	-1.7256					28	11	3	0	0	0	0.23549	1	9988	9988		70.399	0.77094	1	243710			39217	4146	32372	32395	42542	42542					0.052906097574805244
NDFLVNPPQ	9	Unmodified	_NDFLVNPPQ_					0	0	0		ENST00000596769.1_1_19:53510963-53514048:+|nuORF	ENST00000596769.1_1_19:53510963-53514048:+|nuORF	ENST00000596769.1_1_19:53510963-53514048:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.3012084960938	2	522.261456	1042.50836	-0.81582	-0.00042607	2.28	0.0011908	1.4642	0.0007647	522.7629110987361	82.786	0.43857	80.103	79.881	80.319	-2.683					13	8	2	0	0	0	0.027462	1	6842	6842		40.778	2.9666	1	26865			39218	14186	32373	32396	42543	42543					-0.011194204534831442
NDFPYSAVL	9	Unmodified	_NDFPYSAVL_					0	0	0			REV__ENST00000546912.1_1_12:69260670-69264157:-|nuORF	REV__ENST00000546912.1_1_12:69260670-69264157:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.3270263671875	2	513.250557	1024.48656	-0.6243	-0.00032042	-2.1004	-0.001078	-2.7247	-0.0013984	513.2487217795074	67.442	0.79211	64.781	64.347	65.139	-2.661					20	15	2	0	0	0	0.027441	1	5295	5295		49.442	12.282	1	10214	+		39219	19310	32374	32397	42544	42544					-0.024702252020460946
NDFRSTESL	9	Unmodified	_NDFRSTESL_					0	0	0			REV__ENSG00000076513|ENST00000261739|ANKRD13A	REV__ENSG00000076513|ENST00000261739|ANKRD13A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.7254638671875	2	534.751453	1067.48835	-1.9227	-0.0010282	3.848	0.0020577	1.9252	0.0010295	535.2560467093293	66.219	0.38738	62.729	62.564	62.951	-3.4902					12	7	2	0	0	0	0.027448	1	4795	4795		35.618	6.4687	1	13072	+		39220	16993	32375	32398	42545	42545					-0.042692161840932386
NDFWKMVL	8	Unmodified	_NDFWKMVL_					0	0	0		nc|ENSG00000151490|Q16827-2|PTPRO;ENSG00000151490|ENST00000281171|PTPRO;nc|ENSG00000151490|Q16827-4|PTPRO;nc|ENSG00000151490|Q16827-3|PTPRO	nc|ENSG00000151490|Q16827-2|PTPRO	nc|ENSG00000151490|Q16827-2|PTPRO	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2835693359375	2	526.76532	1051.51609	-0.57404	-0.00030238	3.0044	0.0015826	2.4303	0.0012802	526.7664946544551	52.268	0.35141	52.268	52.127	52.478	0					12	7	3	0	0	0	0.028476	1	4091	4091		23.042	0	1	170970			39221	5558	32376	32399	42546	42546					-0.007609844575426905
NDFYNLIE	8	Unmodified	_NDFYNLIE_					0	0	0			REV__sp|P16719|UL01_HCMVAGlycoproteinUL1OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL1PE=3SV=1	REV__sp|P16719|UL01_HCMVAGlycoproteinUL1OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL1PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.8126831054688	2	514.24019	1026.46583	0.062883	3.2337E-05	1.4202	0.00073035	1.4831	0.00076268	514.2390126209735	95.666	0.49662	94.638	94.417	94.913	-1.0281					14	9	2	0	0	0	0.028476	1	8602	8602		73.975	5.1879	1	11060	+		39222	29422	32377	32400	42547	42547					-0.04634815581675866
NDIEYRKSF	9	Unmodified	_NDIEYRKSF_					0	0	0		tr|A0A553SJ45|A0A553SJ45_NIACIRestrictionendonucleaseOS=NialliacirculansOX=1397GN=CEQ21_16075PE=4SV=1	tr|A0A553SJ45|A0A553SJ45_NIACIRestrictionendonucleaseOS=NialliacirculansOX=1397GN=CEQ21_16075PE=4SV=1	tr|A0A553SJ45|A0A553SJ45_NIACIRestrictionendonucleaseOS=NialliacirculansOX=1397GN=CEQ21_16075PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.340087890625	2	586.290745	1170.56694	-0.35278	-0.00020683	2.4805	0.0014543	2.1277	0.0012475	586.2905324259686	71.528	0.24034	71.528	71.389	71.629	0					10	5	3	0	0	0	0.027462	1	6928	6928		24.519	0.99649	1	105570			39223	33462	32378	32401	42548	42548					-0.011523638790094992
NDIIVSPQANE	11	Unmodified	_NDIIVSPQANE_					0	0	0		tr|A0A553SPG3|A0A553SPG3_NIACITrkAfamilypotassiumuptakeproteinOS=NialliacirculansOX=1397GN=CEQ21_26230PE=4SV=1	tr|A0A553SPG3|A0A553SPG3_NIACITrkAfamilypotassiumuptakeproteinOS=NialliacirculansOX=1397GN=CEQ21_26230PE=4SV=1	tr|A0A553SPG3|A0A553SPG3_NIACITrkAfamilypotassiumuptakeproteinOS=NialliacirculansOX=1397GN=CEQ21_26230PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	600.30078125	2	600.298767	1198.58298	0.82555	0.00049558	-0.53649	-0.00032206	0.28906	0.00017352	600.298515365043	66.858	1.7198	63.368	63	64.72	-3.4902					99	34	5	0	0	0	0.36705	1	4875	4875		63.534	1.8426	1	1332400			39224	34038	32379	32402	42549	42549					-0.008367024327753825
NDIIVSPQANE	11	Unmodified	_NDIIVSPQANE_					0	0	0		tr|A0A553SPG3|A0A553SPG3_NIACITrkAfamilypotassiumuptakeproteinOS=NialliacirculansOX=1397GN=CEQ21_26230PE=4SV=1	tr|A0A553SPG3|A0A553SPG3_NIACITrkAfamilypotassiumuptakeproteinOS=NialliacirculansOX=1397GN=CEQ21_26230PE=4SV=1	tr|A0A553SPG3|A0A553SPG3_NIACITrkAfamilypotassiumuptakeproteinOS=NialliacirculansOX=1397GN=CEQ21_26230PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	600.298767	1198.58298	0.18439	0.00011069	-4.9474	-0.0029699	-4.763	-0.0028592	600.2955674510608	63.611	0.39929	63.611	63.455	63.854	0	0.16975	-0.005207	NaN	63.534	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225700			39225	34038	32379	32402							-0.008367024327753825
NDIKLPITKIT	11	Unmodified	_NDIKLPITKIT_					0	0	0			REV__tr|A0A7D6VRK4|A0A7D6VRK4_9CLOTDNAligaseOS=ClostridiumintestinaleOX=36845GN=ligAPE=3SV=1	REV__tr|A0A7D6VRK4|A0A7D6VRK4_9CLOTDNAligaseOS=ClostridiumintestinaleOX=36845GN=ligAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	628.3826293945312	2	628.384645	1254.75474	-4.0512	-0.0025457	0.66972	0.00042084	-3.3814	-0.0021248	628.3849132400738	150.53	4.7174	149.58	148	152.71	-0.95647					178	94	2	0	0	0	0.71321	1	12717	12717		25.126	1.6033	1	419100	+		39226	31425	32380	32403	42550	42550					0.13755074325536043
NDKETDKKS	9	Unmodified	_NDKETDKKS_					0	0	0		tr|A0A553SHU3|A0A553SHU3_NIACIIron-hydroxamateABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13665PE=3SV=1	tr|A0A553SHU3|A0A553SHU3_NIACIIron-hydroxamateABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13665PE=3SV=1	tr|A0A553SHU3|A0A553SHU3_NIACIIron-hydroxamateABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13665PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.762451171875	2	532.76456	1063.51457	-2.3357	-0.0012444	-0.5294	-0.00028204	-2.8651	-0.0015264	532.7643813734192	119.79	1.6656	118.45	117.88	119.55	-1.3444					90	31	5	0	0	0	0.42576	1	11277	11277		49.536	0	1	553200			39227	33313	32381	32404	42551	42551					-0.014649470126187225
NDKFQLPVF	9	Unmodified	_NDKFQLPVF_					0	0	0		nc|ENSG00000196199|Q99549-2|MPHOSPH8;ENSG00000196199|ENST00000361479|MPHOSPH8	nc|ENSG00000196199|Q99549-2|MPHOSPH8	nc|ENSG00000196199|Q99549-2|MPHOSPH8	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.3209228515625	2	554.295299	1106.57605	2.4252	0.0013443	-1.3831	-0.00076664	1.0421	0.00057765	554.2950855165885	121.83	0.74528	121.83	121.29	122.04	0					17	15	2	0	0	0	0.027462	1	13960	13960		23.042	0	1	60118			39228	15239	32382	32405	42552	42552					0.027020294773365094
NDKLGFQVTV	10	Unmodified	_NDKLGFQVTV_					0	0	0		tr|A0A553SIG9|A0A553SIG9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_14835PE=3SV=1	tr|A0A553SIG9|A0A553SIG9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_14835PE=3SV=1	tr|A0A553SIG9|A0A553SIG9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_14835PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.3241577148438	2	560.803488	1119.59242	2.5894	0.0014522	0.39998	0.00022431	2.9894	0.0016765	560.8045788053877	137.67	1.4825	137.67	136.82	138.31	0					48	31	3	0	0	0	0.026602	1	16126	16126		32.751	0	1	57090			39229	33381	32383	32406	42553	42553					0.03741110643431966
NDKLQRHQ	8	Unmodified	_NDKLQRHQ_					0	0	0			REV__nc|ENSG00000278540|Q13085-3|ACACA	REV__nc|ENSG00000278540|Q13085-3|ACACA	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.7781982421875	2	519.775597	1037.53664	-0.50328	-0.00026159	2.6285	0.0013662	2.1252	0.0011046	519.7768395446219	62.297	1.9726	58.839	58.057	60.029	-3.4577					89	40	3	0	0	0	0.73494	1	4341	4341		34.173	0	1	1427500	+		39230	23642	32384	32407	42554	42554					0.019373222464764694
NDKNSKVLMQN	11	Unmodified	_NDKNSKVLMQN_					0	0	0		nc|ENSG00000133863|Q9BXT5|TEX15;ENSG00000133863|ENST00000643185|TEX15	nc|ENSG00000133863|Q9BXT5|TEX15	nc|ENSG00000133863|Q9BXT5|TEX15	MULTI-MSMS	OvCa9_classI_Rep2	2	645.8259887695312	2	645.827169	1289.63978	-2.9064	-0.001877	-0.43209	-0.00027905	-3.3385	-0.0021561	645.8267838930211	35.025	1.3406	32.316	32.059	33.4	-2.7097					67	26	4	0	0	0	0.54114	1	1386	1386		25.574	1.0549	1	141700			39231	4241	32385	32408	42555	42555					0.006550218521169882
NDKPTLVIS	9	Unmodified	_NDKPTLVIS_					0	0	0		tr|A0A7D7AG91|A0A7D7AG91_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08285PE=4SV=1	tr|A0A7D7AG91|A0A7D7AG91_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08285PE=4SV=1	tr|A0A7D7AG91|A0A7D7AG91_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08285PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.31787109375	2	493.779482	985.544411	-0.16629	-8.2109E-05	0.9806	0.0004842	0.81432	0.00040209	493.7798881598884	104.54	1.1292	102.42	102.17	103.3	-2.1192					30	21	2	0	0	0	0.027304	1	9530	9530		98.629	13.27	1	25376			39232	36262	32386	32409	42556	42556					0.05106036723384477
NDKSITGKPY	10	Unmodified	_NDKSITGKPY_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.7778930664062	2	561.793121	1121.57169	2.3822	0.0013383	3.8481	0.0021618	6.2302	0.0035001	561.7951162811191	136.08	1.2334	136.08	135.78	137.01	0					60	25	4	0	0	0	0.026602	1	15836	15836		47.96	14.038	1	1192700	+		39233	21918	32387	32410	42557	42557					0.0157652026375672
NDKYIYIT	8	Unmodified	_NDKYIYIT_					0	0	0		tr|A0A7D6ZYV6|A0A7D6ZYV6_9CLOTSDRfamilyoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17980PE=3SV=1	tr|A0A7D6ZYV6|A0A7D6ZYV6_9CLOTSDRfamilyoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17980PE=3SV=1	tr|A0A7D6ZYV6|A0A7D6ZYV6_9CLOTSDRfamilyoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17980PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.3118896484375	2	515.266207	1028.51786	-0.63644	-0.00032793	-3.2353	-0.001667	-3.8717	-0.001995	515.2643643463784	52.412	0.89954	49.204	48.994	49.893	-3.208					24	17	2	0	0	0	0.028476	1	3189	3189		29.15	2.4566	1	87494			39234	35933	32388	32411	42558	42558					0.004743478320278882
NDLDVVLDD	9	Unmodified	_NDLDVVLDD_					0	0	0			REV__nc|ENSG00000133392|P35749-4|MYH11	REV__nc|ENSG00000133392|P35749-4|MYH11	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.3077697753906	2	509.240386	1016.46622	-0.90457	-0.00046064	1.7303	0.00088116	0.82578	0.00042052	509.2413944546531	97.029	0.66873	95.201	94.984	95.652	-1.8286					20	12	2	0	0	0	0.027295	1	6456	6456		96.19	8.4361	1	22547	+		39235	19142	32389	32412	42559	42559					-0.041354406525101695
NDLDVVLDD	9	Unmodified	_NDLDVVLDD_					0	0	0			REV__nc|ENSG00000133392|P35749-4|MYH11	REV__nc|ENSG00000133392|P35749-4|MYH11	MULTI-MATCH	OvCa99_classI_Rep5	1		2	509.240386	1016.46622	2.058	0.001048	1.4219	0.0007241	3.48	0.0017721	509.2415027680755	95.504	0.25397	95.504	95.284	95.538	0	0.17726	0.00066951	NaN	96.19	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105110	+		39236	19142	32389	32412							-0.041354406525101695
NDLDVVLDD	9	Unmodified	_NDLDVVLDD_					0	0	0			REV__nc|ENSG00000133392|P35749-4|MYH11	REV__nc|ENSG00000133392|P35749-4|MYH11	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	509.240386	1016.46622	0.42579	0.00021683	-0.38912	-0.00019815	0.036676	1.8677E-05	509.2403031979781	97.653	0.8089	95.275	95.013	95.822	-2.3786	-0.051591	-0.001175	NaN	96.19	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25144	+		39237	19142	32389	32412							-0.041354406525101695
NDLITGIL	8	Unmodified	_NDLITGIL_					0	0	0			REV__tr|A0A7D6ZV70|A0A7D6ZV70_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13045PE=4SV=1	REV__tr|A0A7D6ZV70|A0A7D6ZV70_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13045PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	429.2215576171875	2	429.750193	857.485833	-1.9738	-0.00084823	0.73757	0.00031697	-1.2362	-0.00053126	429.75028743003975	104.26	0.59463	104.26	104.02	104.62	0					25	13	3	0	0	0	0.028476	1	11696	11696		44.117	0	1	277880	+		39238	32240	32390	32413	42560	42560					0.05138980148910832
NDLLGLKSLE	10	Unmodified	_NDLLGLKSLE_					0	0	0			REV__ENST00000587552.5_1_19:5696605-5708411:-|nuORF	REV__ENST00000587552.5_1_19:5696605-5708411:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.31103515625	2	551.311146	1100.60774	-0.37818	-0.00020849	-0.44295	-0.0002442	-0.82113	-0.0004527	551.3108232441903	143.73	1.3553	142.28	141.89	143.25	-1.4427					66	25	4	0	0	0	0.50999	1	14075	14075		52.937	5.2794	1	191320	+		39239	22816	32391	32414	42561	42561					0.06145977440610295
NDLLGLKSLE	10	Unmodified	_NDLLGLKSLE_					0	0	0			REV__ENST00000587552.5_1_19:5696605-5708411:-|nuORF	REV__ENST00000587552.5_1_19:5696605-5708411:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	551.311146	1100.60774	-1.0868	-0.00059918	-0.17814	-9.821E-05	-1.265	-0.00069739	551.311245701966	142.81	1.1853	142.58	142.31	143.5	-0.22696	0.18068	-0.0009055	NaN	52.937	42	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36681	+		39240	22816	32391	32414							0.06145977440610295
NDLLGLKSLE	10	Unmodified	_NDLLGLKSLE_					0	0	0			REV__ENST00000587552.5_1_19:5696605-5708411:-|nuORF	REV__ENST00000587552.5_1_19:5696605-5708411:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	551.311146	1100.60774	-3.238	-0.0017851	2.4349	0.0013424	-0.80302	-0.00044271	551.3124061244285	143.33	0.98877	142.34	141.99	142.98	-0.9903	-0.06463	0.0019757	NaN	52.937	35	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36794	+		39241	22816	32391	32414							0.06145977440610295
NDLLMWEP	8	Unmodified	_NDLLMWEP_					0	0	0		ATG2A-KLK10|1|fusion;ENSG00000110046|ENST00000377264|ATG2A;nc|ENSG00000110046|Q2TAZ0-3|ATG2A	ATG2A-KLK10|1|fusion	ATG2A-KLK10|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	509.2402648925781	2	509.239135	1016.46372	1.5833	0.00080629	1.5319	0.00078011	3.1152	0.0015864	509.2399801613584	60.9	1.9539	57.832	56.783	58.737	-3.0685					78	52	2	0	0	0	0.7549	1	2115	2115		24.203	1.1603	1	24864			39242	126	32392	32415	42562	42562					-0.04385567591180006
NDLMEYAKP	9	Oxidation (M)	_NDLM(Oxidation (M))EYAKP_		NDLM(1)EYAKP		NDLM(85)EYAKP	0	0	1		chr9:130466799-130476920|336|272.1|0.03|13.13|+|0|ASS1,None|1	chr9:130466799-130476920|336|272.1|0.03|13.13|+|0|ASS1,None|1	chr9:130466799-130476920|336|272.1|0.03|13.13|+|0|ASS1,None|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.8352661132812	2	548.752607	1095.49066	1.4359	0.00078798	-0.67717	-0.0003716	0.75877	0.00041638	548.7520587544564	148.66	0.53946	148.66	148.47	149.01	0					19	10	2	0	0	0	0.027358	1	17430	17430		85.161	24.189	1	144380			39243	553	32393	32416	42563	42563		13			-0.053265037706296425
NDLTYIFNYI	10	Unmodified	_NDLTYIFNYI_					0	0	0		tr|A0A7D6ZZ20|A0A7D6ZZ20_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18605PE=4SV=1	tr|A0A7D6ZZ20|A0A7D6ZZ20_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18605PE=4SV=1	tr|A0A7D6ZZ20|A0A7D6ZZ20_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18605PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	638.3175659179688	2	638.316428	1274.6183	0.93962	0.00059977	-0.50305	-0.00032111	0.43656	0.00027867	638.3160287407669	32.484	0.60911	29.788	29.544	30.153	-2.6954					24	14	2	0	0	0	0.83835	1	797	797		14.137	3.2716	1	19846			39244	35940	32394	32417	42564	42564					-0.008020399049428306
NDMLFPLCII	10	Unmodified	_NDMLFPLCII_					0	0	0			REV__ENSG00000182782|ENST00000328880|HCAR2	REV__ENSG00000182782|ENST00000328880|HCAR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.8093872070312	2	589.801045	1177.58754	1.1127	0.00065624	4.2711	0.0025191	5.3838	0.0031754	589.804996069701	143.01	0.48309	143.01	142.88	143.37	0					11	9	2	0	0	0	0.026752	1	16750	16750		20.947	0	1	71841	+		39245	22317	32395	32418	42565	42565					0.005847671847959646
NDMQWATLF	9	Unmodified	_NDMQWATLF_					0	0	0			REV__ENST00000298925.9_1_11:20869160-20907003:+|nuORF	REV__ENST00000298925.9_1_11:20869160-20907003:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.2954711914062	2	563.255317	1124.49608	1.8712	0.001054	4.0676	0.0022911	5.9389	0.0033451	563.2570600111574	147.41	0.87511	147.41	146.87	147.74	0					25	17	2	0	0	0	0.027447	1	17204	17204		31.53	0	1	49240	+		39246	24217	32396	32419	42566	42566					-0.061187801881942505
NDMWFIIP	8	Unmodified	_NDMWFIIP_					0	0	0			REV__nc|ENSG00000091129|Q92823-2|NRCAM	REV__nc|ENSG00000091129|Q92823-2|NRCAM	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.3158569335938	2	518.252046	1034.48954	-0.55588	-0.00028808	0.061875	3.2067E-05	-0.494	-0.00025602	518.2524742742386	93.871	0.35815	91.909	91.729	92.087	-1.9617					9	6	2	0	0	0	0.028476	1	6028	6028		20.482	0	1	14250	+		39247	17242	32397	32420	42567	42567					-0.02632673348875869
NDNRRMAGPL	10	Unmodified	_NDNRRMAGPL_					0	0	0			REV__tr|A0A553SGN2|A0A553SGN2_NIACIPhosphoribosylformylglycinamidinesynthasesubunitPurQOS=NialliacirculansOX=1397GN=purQPE=3SV=1	REV__tr|A0A553SGN2|A0A553SGN2_NIACIPhosphoribosylformylglycinamidinesynthasesubunitPurQOS=NialliacirculansOX=1397GN=purQPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	572.2860107421875	2	572.288014	1142.56147	-1.4852	-0.00084994	-2.051	-0.0011738	-3.5361	-0.0020237	572.2866735153697	32.713	1.6873	30.003	29.53	31.218	-2.7097					70	33	3	0	0	0	0.69073	1	1146	1146		31.53	1.2121	1	392360	+		39248	29723	32398	32421	42568	42568					-0.004103659424345096
NDNSPEIII	9	Unmodified	_NDNSPEIII_					0	0	0		nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7;ENSG00000254122|ENST00000398594|PCDHGB7;nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6;ENSG00000253305|ENST00000520790|PCDHGB6;PCDHGB6|p.F515Tfs*16|1|0.14|ENSG00000253305|chr5:141409744-141409745|-/ACTCCTCCTGTCCTGGGCCGAATGCTCT|frameshift_variant	nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7;PCDHGB6|p.F515Tfs*16|1|0.14|ENSG00000253305|chr5:141409744-141409745|-/ACTCCTCCTGTCCTGGGCCGAATGCTCT|frameshift_variant	nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7583923339844	2	507.758746	1013.50294	-0.087912	-4.4638E-05	-1.2341	-0.00062664	-1.3221	-0.00067128	507.7579372157221	115.82	0.84155	114.42	114.07	114.91	-1.3977					42	16	4	0	0	0	0.48324	1	10811	10811		44.117	1.2525	1	144850			39249	9443;15480	32399	32422	42569	42569					-0.003271440359412736
NDPSDPALA	9	Unmodified	_NDPSDPALA_					0	0	0			REV__nc|ENSG00000157077|O95405-3|ZFYVE9	REV__nc|ENSG00000157077|O95405-3|ZFYVE9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.2702941894531	2	450.208889	898.403226	0.70266	0.00031634	-1.3704	-0.00061696	-0.66772	-0.00030061	450.20725509673423	61.725	0.41866	58.268	58.057	58.475	-3.4577					17	8	3	0	0	0	0.027433	1	4273	4273		19.997	0	1	96874	+		39250	20510	32400	32423	42570	42570					-0.05003961649902067
NDQLKQVQ	8	Unmodified	_NDQLKQVQ_					0	0	0		ENSG00000205726|ENST00000381318|ITSN1;nc|ENSG00000205726|Q15811-13|ITSN1;nc|ENSG00000205726|Q15811-8|ITSN1;nc|ENSG00000205726|Q15811-9|ITSN1;nc|ENSG00000205726|Q15811-4|ITSN1;ITSN1|p.S1555Tfs*2|1|0.04|ENSG00000205726|chr21:33883659-33883659|G/-|frameshift_variant;ITSN1|p.V1253Sfs*9|1|0.27|ENSG00000205726|chr21:33856831-33856849|GTGAATGACCTGCAGCTGG/-|frameshift_variant;CON__ENSEMBL:ENSBTAP00000001528;nc|ENSG00000205726|Q15811-2|ITSN1;nc|ENSG00000205726|Q15811-7|ITSN1;nc|ENSG00000205726|Q15811-10|ITSN1;nc|ENSG00000205726|Q15811-3|ITSN1;nc|ENSG00000205726|Q15811-11|ITSN1;nc|ENSG00000205726|Q15811-12|ITSN1;nc|ENSG00000205726|Q15811-5|ITSN1;nc|ENSG00000205726|Q15811-6|ITSN1;ITSN1|p.G971Wfs*19|1|0.03|ENSG00000205726|chr21:33818449-33818450|-/T|frameshift_variant	ENSG00000205726|ENST00000381318|ITSN1	ENSG00000205726|ENST00000381318|ITSN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.7801818847656	2	486.759081	971.503609	-0.58838	-0.0002864	-1.4623	-0.0007118	-2.0507	-0.00099819	486.75777452480867	91.998	0.25424	89.456	89.313	89.567	-2.5425					5	4	2	0	0	0	0.028476	1	7962	7962		34.173	5.023	1	5736.7		+	39251	602	32401	32424	42571	42571					0.016716954037633514
NDQNERTGPL	10	Unmodified	_NDQNERTGPL_					0	0	0		ENST00000494673.1_1_6:31243358-31244615:+|nuORF	ENST00000494673.1_1_6:31243358-31244615:+|nuORF	ENST00000494673.1_1_6:31243358-31244615:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.316162109375	2	572.273084	1142.53161	0.74432	0.00042595	-2.6642	-0.0015246	-1.9198	-0.0010987	572.2715059987358	153.26	0.55252	153.26	153	153.55	0					21	10	3	0	0	0	0.026867	1	17986	17986		42.864	13.694	1	41841			39252	12760	32402	32425	42572	42572					-0.03395026406815305
NDQPEDLIQ	9	Unmodified	_NDQPEDLIQ_					0	0	0		nc|ENSG00000171634|Q12830|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830-4|BPTF	nc|ENSG00000171634|Q12830|BPTF	nc|ENSG00000171634|Q12830|BPTF	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.2492065429688	2	536.251286	1070.48802	-1.5791	-0.00084681	-0.026446	-1.4182E-05	-1.6056	-0.00086099	536.2511641448887	120.77	1.4863	119.43	119.13	120.62	-1.3479					72	28	3	0	0	0	0.27001	1	11386	11386		66.429	8.1994	1	361250			39253	7221	32403	32426	42573	42573					-0.04440635903938528
NDQRALRKLQ	10	Unmodified	_NDQRALRKLQ_					0	0	0		ENST00000535413.1_1_12:121134228-121138519:+|nuORF	ENST00000535413.1_1_12:121134228-121138519:+|nuORF	ENST00000535413.1_1_12:121134228-121138519:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	620.8241577148438	2	621.357285	1240.70002	0.92884	0.00057714	4.1062	0.0025514	5.0351	0.0031286	621.3598594749616	131.14	0.47298	131.14	130.91	131.39	0					13	9	2	0	0	0	0.026867	1	15241	15241		28.081	2.0181	1	60451			39254	13375	32404	32427	42574	42574					0.08929500297517734
NDQRHLSRIVL	11	Unmodified	_NDQRHLSRIVL_					0	0	0			REV__tr|A0A553SQU8|A0A553SQU8_NIACIConjugaltransferproteinOS=NialliacirculansOX=1397GN=CEQ21_07300PE=3SV=1	REV__tr|A0A553SQU8|A0A553SQU8_NIACIConjugaltransferproteinOS=NialliacirculansOX=1397GN=CEQ21_07300PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	450.2828369140625	3	450.92487	1349.75278	-0.84173	-0.00037956	1.7961	0.00080992	0.95439	0.00043036	451.2588157843699	82.924	0.30097	80.627	80.48	80.781	-2.2963					9	5	3	0	0	0	0.026221	1	4699	4699		6.001	0	1	13363	+		39255	30665	32405	32428	42575	42575					0.0918945836031071
NDRAQRLSHPV	11	Unmodified	_NDRAQRLSHPV_					0	0	0			REV__ERC1-CACNA1C|23|fusion	REV__ERC1-CACNA1C|23|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	646.8489379882812	2	646.844542	1291.67453	1.8867	0.0012204	2.2114	0.0014304	4.098	0.0026508	646.8459676358829	78.778	0.81128	78.778	78.54	79.352	0					58	19	4	0	0	0	0.39237	1	7993	7993		61.691	6.9689	1	4237200	+		39256	28114	32406	32429	42576	42576					0.04036025775099006
NDRGRKWL	8	Unmodified	_NDRGRKWL_					0	0	0			REV__nc|ENSG00000184060|Q9NPF8-2|ADAP2	REV__nc|ENSG00000184060|Q9NPF8-2|ADAP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.3062133789062	2	522.788507	1043.56246	-0.086732	-4.5342E-05	3.5055	0.0018326	3.4188	0.0017873	523.2927555761796	109.78	0.26443	108.17	107.96	108.23	-1.6011					5	4	2	0	0	0	0.028476	1	10061	10061		25.574	4.6271	1	5299.5	+		39257	22402	32407	32430	42577	42577					0.042422164887511826
NDRVWVPVE	9	Unmodified	_NDRVWVPVE_					0	0	0			REV__tr|A0A553SG00|A0A553SG00_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09845PE=4SV=1	REV__tr|A0A553SG00|A0A553SG00_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09845PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.9275512695312	2	557.288005	1112.56146	1.6662	0.00092853	3.4588	0.0019275	5.1249	0.0028561	557.2899500804564	146.78	1.0753	146.78	146.47	147.55	0					43	21	4	0	0	0	0.027418	1	17151	17151		49.442	0	1	79921	+		39258	29641	32408	32431	42578	42578					0.009679573291805355
NDSHLLAHLF	10	Unmodified	_NDSHLLAHLF_					0	0	0			REV__ENST00000587500.5_1_19:10823370-10823943:+|nuORF	REV__ENST00000587500.5_1_19:10823370-10823943:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	583.802490234375	2	583.80128	1165.58801	0.97841	0.0005712	1.9394	0.0011322	2.9178	0.0017034	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.84764	1	1458	1458		12.959	2.0936	1	155970	+		39259	23257	32409	32432	42579	42579					0.011836462205110365
NDSIRVIRIKS	11	Unmodified	_NDSIRVIRIKS_					0	0	0			REV__tr|A0A7D6W307|A0A7D6W307_9CLOTDUF4830domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08080PE=4SV=1	REV__tr|A0A7D6W307|A0A7D6W307_9CLOTDUF4830domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08080PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	435.25921630859375	3	434.261371	1299.76228	0.040052	1.7393E-05	-0.080391	-3.4911E-05	-0.040339	-1.7518E-05	434.2612120185365	52.721	1.0559	49.513	49.247	50.303	-3.208					42	20	3	0	0	0	0.026204	1	3237	3237		16.53	8.1226	1	111280	+		39260	31908	32410	32433	42580	42580					0.12439226645847157
NDSIRVIRIKS	11	Unmodified	_NDSIRVIRIKS_					0	0	0			REV__tr|A0A7D6W307|A0A7D6W307_9CLOTDUF4830domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08080PE=4SV=1	REV__tr|A0A7D6W307|A0A7D6W307_9CLOTDUF4830domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08080PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	434.261371	1299.76228	-1.0289	-0.00044682	0.83419	0.00036226	-0.19473	-8.4564E-05	434.2616904541329	52.27	1.0879	49.457	49.046	50.134	-2.8129	-0.028348	0.000406	NaN	11.932	58	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100800	+		39261	31908	32410	32433							0.12439226645847157
NDSLLTVNK	9	Unmodified	_NDSLLTVNK_					0	0	0		ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-MSMS	OvCa9_classI_Rep3	3	502.27545166015625	2	502.274564	1002.53457	-0.51252	-0.00025743	0.022578	1.134E-05	-0.48994	-0.00024608	502.2744215963091	78.731	1.5525	76.378	75.998	77.551	-2.3527					73	30	4	0	0	0	0.2077	1	4203	4203		75.043	2.1641	1	727880			39262	6177	32411	32434	42581	42581					0.03340848718005418
NDTKNLLET	9	Unmodified	_NDTKNLLET_					0	0	0			REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A	REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.7941284179688	2	524.269478	1046.5244	-0.51617	-0.00027061	-3.2635	-0.001711	-3.7797	-0.0019816	524.267745175678	78.867	0.51521	76.115	75.807	76.322	-2.7514					13	10	2	0	0	0	0.027459	1	6389	6389		52.937	31.99	1	40777	+		39263	16986	32412	32435	42582	42582					0.0030024099276033667
NDTVTLTVT	9	Unmodified	_NDTVTLTVT_					0	0	0			REV__CON__P15636	REV__CON__P15636	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.2732849121094	2	482.253297	962.492041	-0.7614	-0.00036719	-0.58693	-0.00028305	-1.3483	-0.00065024	482.2541596268804	49.646	0.26107	49.646	49.462	49.723	0					8	5	2	0	0	0	0.027461	1	3731	3731		32.812	0	1	102770	+	+	39264	16194	32413	32436	42583	42583					0.009294535897652167
NDVDDEEVP	9	Unmodified	_NDVDDEEVP_					0	0	0		ENST00000533085.2_1_12:89894792-89896268:+|nuORF	ENST00000533085.2_1_12:89894792-89896268:+|nuORF	ENST00000533085.2_1_12:89894792-89896268:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.283203125	2	516.211826	1030.4091	-0.33948	-0.00017525	1.2004	0.00061964	0.86087	0.00044439	516.2123382104978	83.382	0.58492	80.72	80.437	81.022	-2.6629					16	11	2	0	0	0	0.027462	1	6953	6953		27.882	0	1	19469			39265	13334	32414	32437	42584	42584					-0.10488907928902336
NDVFDFLKE	9	Unmodified	_NDVFDFLKE_					0	0	0			REV__tr|A0A553SJ11|A0A553SJ11_NIACIDUF4097domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15900PE=4SV=1	REV__tr|A0A553SJ11|A0A553SJ11_NIACIDUF4097domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15900PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	563.77734375	2	563.774396	1125.53424	1.3659	0.00077003	1.0204	0.00057528	2.3863	0.0013453	563.7748156939614	132.42	0.90094	132.42	132.13	133.04	0					43	18	3	0	0	0	0.53483	1	15395	15395		39.253	1.4413	1	155910	+		39266	29953	32415	32438	42585	42585					-0.02350571001852586
NDVILTHII	9	Unmodified	_NDVILTHII_					0	0	0			REV__nc|ENSG00000158234|Q9NVQ4|FAIM	REV__nc|ENSG00000158234|Q9NVQ4|FAIM	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.3165283203125	2	519.303124	1036.5917	-0.095856	-4.9778E-05	-0.039437	-2.048E-05	-0.13529	-7.0258E-05	519.3031083599723	136.3	0.54018	136.07	135.81	136.35	-0.22697					15	10	2	0	0	0	0.027462	1	13536	13536		38.806	8.3025	1	12095	+		39267	20559	32416	32439	42586	42586					0.07486315994378856
NDVKDSPSN	9	Unmodified	_NDVKDSPSN_					0	0	0			REV__nc|ENSG00000060749|Q2KHR3|QSER1	REV__nc|ENSG00000060749|Q2KHR3|QSER1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.76788330078125	2	488.222528	974.430503	0.3667	0.00017903	-0.16427	-8.0198E-05	0.20244	9.8834E-05	488.22249808161905	64.406	0.58495	60.931	60.686	61.271	-3.475					15	11	2	0	0	0	0.027459	1	4611	4611		36.447	0	1	20590	+		39268	16742	32417	32440	42587	42587					-0.05773478109517782
NDVSAHTALI	10	Unmodified	_NDVSAHTALI_					0	0	0			REV__ENSG00000174684|ENST00000311181|B4GAT1	REV__ENSG00000174684|ENST00000311181|B4GAT1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.8369750976562	2	520.772188	1039.52982	-0.38048	-0.00019814	-1.1576	-0.00060283	-1.5381	-0.00080097	520.7717179251161	116.41	0.71642	115.05	114.84	115.56	-1.3645					26	13	3	0	0	0	0.026849	1	10883	10883		25.574	3.6142	1	26362	+		39269	21846	32418	32441	42588	42588					0.011639645752211436
NDWSFLLLSL	10	Unmodified	_NDWSFLLLSL_					0	0	0		ENST00000605862.4_1_7:128255955-128262737:+|nuORF	ENST00000605862.4_1_7:128255955-128262737:+|nuORF	ENST00000605862.4_1_7:128255955-128262737:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	402.5741271972656	3	403.216768	1206.62847	0.93117	0.00037546	2.2629	0.00091244	3.1941	0.0012879	403.5521104283612	47.435	0.29742	44.726	44.538	44.836	-2.7097					8	5	2	0	0	0	0.026906	1	2893	2893		27.047	0	1	7492.1			39270	14271	32419	32442	42589	42589					0.033425678203229836
NDYKIALL	8	Unmodified	_NDYKIALL_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-SECPEP	OvCa9_classI_Rep2	2	474.7911376953125	2	475.271293	948.528032	-0.68164	-0.00032396	0.52239	0.00024828	-0.15925	-7.5686E-05	475.2713609859971	104.7	0.83968	104.13	103.72	104.56	-0.57639					31	16	3	0	0	0	0.028476	1	9691	9691		38.806	0	1	44025			39271	2892	32420	32443	42590	42590					0.05170955557275647
NDYKIALL	8	Unmodified	_NDYKIALL_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23;nc|ENSG00000112282|Q9ULK4-2|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-SECPEP	OvCa9_classI_Rep3	3	474.79156494140625	2	475.271293	948.528032	1.2553	0.00059659	-0.69296	-0.00032934	0.5623	0.00026724	475.27050549611596	105.4	0.98917	104.05	103.78	104.77	-1.3482					41	18	5	0	0	0	0.028476	1	7393	7393		45.952	25.005	1	65025			39272	2892	32420	32443	42591	42591					0.05170955557275647
NEAARSPKS	9	Unmodified	_NEAARSPKS_					0	0	0			REV__nc|ENSG00000162105|Q9UPX8-2|SHANK2	REV__nc|ENSG00000162105|Q9UPX8-2|SHANK2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.783447265625	2	480.24888	958.483208	-0.40581	-0.00019489	-3.1562	-0.0015157	-3.562	-0.0017106	480.24752471981554	48.439	0.36115	45.331	45.09	45.451	-3.1077					10	6	2	0	0	0	0.027402	1	2663	2663		56.721	13.857	1	25721	+		39273	20722	32421	32444	42592	42592					0.002305247439608138
NEAGPLPGQ	9	Unmodified	_NEAGPLPGQ_					0	0	0			REV__ENSG00000101236|ENST00000358395|RNF24	REV__ENSG00000101236|ENST00000358395|RNF24	MULTI-SECPEP	OvCa99_classI_Rep5	1	440.7528991699219	2	441.719424	881.424296	0.66974	0.00029584	-0.8943	-0.00039503	-0.22457	-9.9195E-05	441.7189860659995	40.409	0.41888	40.409	40.2	40.619	0					14	8	2	0	0	0	0.027426	1	2476	2476		56.721	1.9447	1	103650	+		39274	17485	32422	32445	42593	42593					-0.02115951550376849
NEAHVNIYPI	10	Unmodified	_NEAHVNIYPI_					0	0	0		nc|ENSG00000139915|Q7Z553-2|MDGA2;nc|ENSG00000139915|Q7Z553|MDGA2;ENSG00000139915|ENST00000399232|MDGA2	nc|ENSG00000139915|Q7Z553-2|MDGA2	nc|ENSG00000139915|Q7Z553-2|MDGA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.3306274414062	2	585.301113	1168.58767	1.8659	0.0010921	-0.12155	-7.1146E-05	1.7443	0.001021	585.3012223264808	95.39	0.79494	95.39	95.161	95.956	0					39	18	3	0	0	0	0.026936	1	10408	10408		64.207	19.83	1	1111600			39275	4810	32423	32446	42594	42594					0.010122265006430098
NEAHVNIYPI	10	Unmodified	_NEAHVNIYPI_					0	0	0		nc|ENSG00000139915|Q7Z553-2|MDGA2;nc|ENSG00000139915|Q7Z553|MDGA2;ENSG00000139915|ENST00000399232|MDGA2	nc|ENSG00000139915|Q7Z553-2|MDGA2	nc|ENSG00000139915|Q7Z553-2|MDGA2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	585.301113	1168.58767	-0.04423	-2.5888E-05	-0.55589	-0.00032536	-0.60012	-0.00035125	585.3009181759762	96.395	1.483	95.367	94.615	96.098	-1.0281	0.0057075	-0.0011432	NaN	54.776	67	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75681			39276	4810	32423	32446							0.010122265006430098
NEAHVNIYPI	10	Unmodified	_NEAHVNIYPI_					0	0	0		nc|ENSG00000139915|Q7Z553-2|MDGA2;nc|ENSG00000139915|Q7Z553|MDGA2;ENSG00000139915|ENST00000399232|MDGA2	nc|ENSG00000139915|Q7Z553-2|MDGA2	nc|ENSG00000139915|Q7Z553-2|MDGA2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	585.301113	1168.58767	-2.0317	-0.0011892	1.6942	0.00099159	-0.33759	-0.00019759	585.3020815481043	97.186	1.2178	95.426	94.793	96.011	-1.7595	0.06499	0.0014907	NaN	54.776	56	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90918			39277	4810	32423	32446							0.010122265006430098
NEAHVNIYPI	10	Unmodified	_NEAHVNIYPI_					0	0	0		nc|ENSG00000139915|Q7Z553-2|MDGA2;nc|ENSG00000139915|Q7Z553|MDGA2;ENSG00000139915|ENST00000399232|MDGA2	nc|ENSG00000139915|Q7Z553-2|MDGA2	nc|ENSG00000139915|Q7Z553-2|MDGA2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	585.301113	1168.58767	0.11638	6.8116E-05	-0.25902	-0.00015161	-0.14264	-8.349E-05	585.3012404141398	97.641	1.3623	95.262	94.659	96.022	-2.3786	-0.099336	-0.00079571	NaN	54.776	64	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83990			39278	4810	32423	32446							0.010122265006430098
NEAIARAQAQT	11	Unmodified	_NEAIARAQAQT_					0	0	0			REV__nc|ENSG00000008226|Q9Y238-2|DLEC1	REV__nc|ENSG00000008226|Q9Y238-2|DLEC1	MULTI-SECPEP	OvCa9_classI_Rep2	2	586.8328857421875	2	586.804551	1171.59455	0.74171	0.00043524	2.7098	0.0015902	3.4516	0.0020254	586.8063483779915	91.484	1.2663	90.248	89.901	91.167	-1.2355					78	23	5	0	0	0	0.025822	1	8131	8131		54.722	13.296	1	266840	+		39279	16447	32424	32447	42595	42595					0.01561539381214061
NEAISKKIP	9	Unmodified	_NEAISKKIP_					0	0	0		nc|ENSG00000147874|Q7Z4H7-2|HAUS6;nc|ENSG00000147874|Q7Z4H7-3|HAUS6;ENSG00000147874|ENST00000380502|HAUS6	nc|ENSG00000147874|Q7Z4H7-2|HAUS6	nc|ENSG00000147874|Q7Z4H7-2|HAUS6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.79376220703125	2	500.295299	998.576045	0.92982	0.00046518	-0.78681	-0.00039364	0.14301	7.1549E-05	500.2945076793236	85.995	1.4375	83.349	83.042	84.48	-2.6463					51	28	5	0	0	0	0.027447	1	7324	7324		56.721	9.0637	1	344530			39280	5379	32425	32448	42596	42596					0.07670029477333173
NEAIVKDVL	9	Unmodified	_NEAIVKDVL_					0	0	0		DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.F3496Wfs*92|1|0.14|ENSG00000197102|chr14:102034043-102034044|-/GACCTGGCAGCTGTCGAGGC|frameshift_variant;DYNC1H1|p.P2596Tfs*19|1|0.06|ENSG00000197102|chr14:102016936-102016937|-/A|frameshift_variant;DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	500.78631591796875	2	500.787307	999.560061	2.5931	0.0012986	-1.3772	-0.00068967	1.216	0.00060894	500.7862974690332	86.517	0.86475	86.517	86.231	87.096	0					54	20	5	0	0	0	0.034473	2	9124	9121;9124		131.62	16.722	1	4015300			39281	767;768	32426	32449	42597;42598	42598					0.060263232404167866
NEAIVKDVL	9	Unmodified	_NEAIVKDVL_					0	0	0		DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.F3496Wfs*92|1|0.14|ENSG00000197102|chr14:102034043-102034044|-/GACCTGGCAGCTGTCGAGGC|frameshift_variant;DYNC1H1|p.P2596Tfs*19|1|0.06|ENSG00000197102|chr14:102016936-102016937|-/A|frameshift_variant;DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	500.787307	999.560061	1.2111	0.00060648	-0.32736	-0.00016394	0.88369	0.00044254	500.78658865780375	88.2	1.424	86.833	86.054	87.478	-1.3676	0.15813	0.00034396	NaN	131.62	46	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82584			39282	767;768	32426	32449							0.060263232404167866
NEAIVMKEA	9	Unmodified	_NEAIVMKEA_					0	0	0		nc|ENSG00000122417|Q9ULJ1-2|ODF2L;nc|ENSG00000122417|Q9ULJ1|ODF2L;nc|ENSG00000122417|Q9ULJ1-5|ODF2L;nc|ENSG00000122417|Q9ULJ1-6|ODF2L;nc|ENSG00000122417|Q9ULJ1-3|ODF2L;ENSG00000122417|ENST00000460698|ODF2L	nc|ENSG00000122417|Q9ULJ1-2|ODF2L	nc|ENSG00000122417|Q9ULJ1-2|ODF2L	MULTI-SECPEP	OvCa9_classI_Rep2	2	502.2862243652344	2	502.757692	1003.50083	-1.21	-0.00060835	-1.9637	-0.00098724	-3.1737	-0.0015956	502.7565995992518	83.839	1.0725	82.293	81.877	82.95	-1.5462					58	20	4	0	0	0	0.027462	1	7236	7236		35.618	3.6634	1	138360			39283	14991	32427	32450	42599	42599					-0.0007789604541130757
NEAKLRLI	8	Unmodified	_NEAKLRLI_					0	0	0		nc|ENSG00000215018|Q2UY09-3|COL28A1;nc|ENSG00000215018|Q2UY09-2|COL28A1;ENSG00000215018|ENST00000399429|COL28A1	nc|ENSG00000215018|Q2UY09-3|COL28A1	nc|ENSG00000215018|Q2UY09-3|COL28A1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.783447265625	2	478.798009	955.581465	0.092368	4.4225E-05	-0.62122	-0.00029744	-0.52885	-0.00025321	478.79761531977204	48.071	0.61282	44.963	44.838	45.451	-3.1077					17	11	2	0	0	0	0.028476	1	2663	2663		39.253	10.103	1	24199			39284	9197	32428	32451	42600	42600					0.10189753059808027
NEALDAEYV	9	Unmodified	_NEALDAEYV_					0	0	0			REV__nc|ENSG00000169851|O60245|PCDH7	REV__nc|ENSG00000169851|O60245|PCDH7	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.2572021484375	2	512.235104	1022.45566	-0.25569	-0.00013097	3.4224	0.0017531	3.1667	0.0016221	512.236654891993	56.267	0.48645	56.267	56.011	56.498	0					19	11	2	0	0	0	0.027462	1	4691	4691		44.117	0	1	637930	+		39285	21488	32429	32452	42601	42601					-0.05467423306947694
NEALHLKQSH	10	Unmodified	_NEALHLKQSH_					0	0	0			REV__ENST00000421922.6_1_1:32670759-32670846:+|nuORF	REV__ENST00000421922.6_1_1:32670759-32670846:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	588.8140869140625	2	588.809636	1175.60472	-0.073389	-4.3212E-05	3.1969	0.0018824	3.1236	0.0018392	588.8114564932176	57.219	1.7762	53.874	53.273	55.049	-3.3449					76	34	3	0	0	0	0.34811	1	3707	3707		75.043	3.1658	1	327140	+		39286	25614	32430	32453	42602	42602					0.0239414710647452
NEALHLKQSH	10	Unmodified	_NEALHLKQSH_					0	0	0			REV__ENST00000421922.6_1_1:32670759-32670846:+|nuORF	REV__ENST00000421922.6_1_1:32670759-32670846:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	588.809636	1175.60472	-1.1244	-0.00066208	4.5078	0.0026543	3.3834	0.0019922	588.8120735446784	56.512	1.2401	53.708	53.175	54.415	-2.804	-0.083302	0.0008424	NaN	75.043	55	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86524	+		39287	25614	32430	32453							0.0239414710647452
NEALHLKQSH	10	Unmodified	_NEALHLKQSH_					0	0	0			REV__ENST00000421922.6_1_1:32670759-32670846:+|nuORF	REV__ENST00000421922.6_1_1:32670759-32670846:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	588.809636	1175.60472	-0.073389	-4.3212E-05	3.1969	0.0018824	3.1236	0.0018392	588.8114564932176	57.219	1.7762	53.874	53.273	55.049	-3.3449	0.083302	-0.00070132	NaN	75.043	76	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	327140	+		39288	25614	32430	32453							0.0239414710647452
NEALPKDV	8	Unmodified	_NEALPKDV_					0	0	0		nc|ENSG00000169891|Q8NFH8-4|REPS2;ENSG00000169891|ENST00000357277|REPS2	nc|ENSG00000169891|Q8NFH8-4|REPS2	nc|ENSG00000169891|Q8NFH8-4|REPS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.2808837890625	2	443.23745	884.460347	4.7986	0.0021269	-2.2536	-0.00099886	2.5451	0.0011281	443.2362770384301	88.191	0.21201	88.191	88.13	88.342	0					7	4	2	0	0	0	0.028476	1	9388	9388		20.947	4.242	1	97907			39289	7048	32431	32454	42603	42603					0.013495056264787308
NEAMEELEN	9	Unmodified	_NEAMEELEN_					0	0	0		tr|A0A553STP0|A0A553STP0_NIACISigma-54-dependentFisfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_05080PE=4SV=1	tr|A0A553STP0|A0A553STP0_NIACISigma-54-dependentFisfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_05080PE=4SV=1	tr|A0A553STP0|A0A553STP0_NIACISigma-54-dependentFisfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_05080PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.2703247070312	2	539.721504	1077.42845	-0.41879	-0.00022603	2.9321	0.0015825	2.5133	0.0013565	539.7224214008963	52.282	0.26441	52.282	52.083	52.347	0					9	5	2	0	0	0	0.027432	1	4067	4067		67.494	10.773	1	106460			39290	34513	32432	32455	42604	42604					-0.1071627490962328
NEAQTYENSF	10	Unmodified	_NEAQTYENSF_					0	0	0			REV__nc|ENSG00000135269|Q9UGI8-2|TES	REV__nc|ENSG00000135269|Q9UGI8-2|TES	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.8877258300781	3	401.503525	1201.48875	0.32384	0.00013002	-2.3802	-0.00095566	-2.0564	-0.00082563	401.5025256750737	43.629	0.47431	43.629	43.478	43.952	0					15	10	2	0	0	0	0.02661	1	2910	2910		24.232	0	1	235090	+		39291	19269	32433	32456	42605	42605					-0.10393841254904146
NEASVLHNL	9	Unmodified	_NEASVLHNL_					0	0	0		nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000078814|A7E2Y1-2|MYH7B;ENSG00000100345|ENST00000216181|MYH9;MYH9|p.A1773Sfs*19|1|0.04|ENSG00000100345|chr22:36285287-36285288|-/T|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	nc|ENSG00000105357|Q7Z406-5|MYH14;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133026|P35580|MYH10	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OvCa99_classI_Rep5	1	498.7602844238281	2	498.759081	995.503609	2.0378	0.0010164	-0.59962	-0.00029907	1.4382	0.00071732	498.7588808807509	76.985	1.7802	76.985	76.718	78.498	0					120	42	6	0	0	0	0.043101	2	7762	7733;7762		124.08	19.334	1	22330000			39292	2050;15021;4218;2445	32434	32457	42606;42607	42607					0.005676954037653559
NEASVLHNL	9	Unmodified	_NEASVLHNL_					0	0	0		nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000078814|A7E2Y1-2|MYH7B;ENSG00000100345|ENST00000216181|MYH9;MYH9|p.A1773Sfs*19|1|0.04|ENSG00000100345|chr22:36285287-36285288|-/T|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	nc|ENSG00000105357|Q7Z406-5|MYH14;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133026|P35580|MYH10	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OvCa9_classI_Rep2	2	498.7569885253906	2	498.759081	995.503609	-0.011973	-5.9717E-06	-1.1513	-0.00057424	-1.1633	-0.00058021	498.7586933909647	79.114	1.7688	77.374	76.855	78.624	-1.7398					102	34	4	0	0	0	0.084918	3	6617	6612;6617;6623		101.25	18.368	1	376320			39293	2050;15021;4218;2445	32434	32457	42608;42609;42610	42609					0.005676954037653559
NEASVLHNL	9	Unmodified	_NEASVLHNL_					0	0	0		nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000078814|A7E2Y1-2|MYH7B;ENSG00000100345|ENST00000216181|MYH9;MYH9|p.A1773Sfs*19|1|0.04|ENSG00000100345|chr22:36285287-36285288|-/T|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	nc|ENSG00000105357|Q7Z406-5|MYH14;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133026|P35580|MYH10	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OvCa9_classI_Rep3	3	498.7591552734375	2	498.759081	995.503609	-0.099155	-4.9455E-05	-0.44029	-0.0002196	-0.53944	-0.00026905	498.75872565850705	79.267	2.0659	76.927	76.562	78.628	-2.3399					99	40	4	0	0	0	0.0086488	6	4267	4262;4267;4273;4280;4286;4293		176.09	36.278	1	737480			39294	2050;15021;4218;2445	32434	32457	42611;42612;42613;42614;42615;42616	42612					0.005676954037653559
NEASVLHNL	9	Unmodified	_NEASVLHNL_					0	0	0		nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000078814|A7E2Y1-2|MYH7B;ENSG00000100345|ENST00000216181|MYH9;MYH9|p.A1773Sfs*19|1|0.04|ENSG00000100345|chr22:36285287-36285288|-/T|frameshift_variant;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	nc|ENSG00000105357|Q7Z406-5|MYH14;ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133026|P35580|MYH10	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.7597961425781	2	498.759081	995.503609	-0.83622	-0.00041707	0.1679	8.3743E-05	-0.66832	-0.00033333	498.7590045748673	79.956	1.4656	77.205	76.938	78.404	-2.7514					79	29	5	0	0	0	0.036986	3	6500	6500;6511;6523		129.42	30.839	1	758020			39295	2050;15021;4218;2445	32434	32457	42617;42618;42619	42617					0.005676954037653559
NEAVNCSY	8	Unmodified	_NEAVNCSY_					0	0	0		nc|ENSG00000133863|Q9BXT5|TEX15;ENSG00000133863|ENST00000643185|TEX15	nc|ENSG00000133863|Q9BXT5|TEX15	nc|ENSG00000133863|Q9BXT5|TEX15	MULTI-SECPEP	OvCa99_classI_Rep5	1	449.7585144042969	2	450.181817	898.349082	0.93519	0.00042101	-1.0287	-0.00046312	-0.093537	-4.2108E-05	450.18129574779937	45.518	0.37821	45.518	45.332	45.71	0					14	8	2	0	0	0	0.028476	1	3155	3155		49.442	28.495	1	135100			39296	4241	32435	32458	42620	42620					-0.10415877073114643
NECDIESF	8	Unmodified	_NECDIESF_					0	0	0		nc|ENSG00000142910|Q9GZM7-3|TINAGL1;ENSG00000142910|ENST00000271064|TINAGL1;ENST00000463112.1_1_1:32051343-32052577:+|nuORF	nc|ENSG00000142910|Q9GZM7-3|TINAGL1	nc|ENSG00000142910|Q9GZM7-3|TINAGL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.2896728515625	2	478.686933	955.359312	-0.87253	-0.00041767	0.37799	0.00018094	-0.49454	-0.00023673	478.68621674831616	43.08	0.68282	40.073	39.853	40.536	-3.0074					24	12	3	0	0	0	0.028476	1	2048	2048		29.15	6.1071	1	40216			39297	5000	32436	32459	42621	42621					-0.1201531413853445
NECLRSIIK	9	Unmodified	_NECLRSIIK_					0	0	0			REV__tr|A0A553SLW5|A0A553SLW5_NIACISensordomain-containingdiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_21415PE=4SV=1	REV__tr|A0A553SLW5|A0A553SLW5_NIACISensordomain-containingdiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_21415PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	538.3032836914062	2	538.300059	1074.58556	1.0046	0.00054076	2.3569	0.0012687	3.3615	0.0018095	538.3012420644196	89.249	1.7781	87.881	87.135	88.913	-1.3676					69	26	3	0	0	0	0.16264	1	7857	7857		82.75	0.50997	1	764200	+		39298	30271	32437	32460	42622	42622					0.051254744912057504
NECLWTDML	9	Unmodified	_NECLWTDML_					0	0	0		ENSG00000100234|ENST00000266085|TIMP3	ENSG00000100234|ENST00000266085|TIMP3	ENSG00000100234|ENST00000266085|TIMP3	MULTI-SECPEP	OvCa9_classI_Rep3	3	561.8048706054688	2	562.741185	1123.46782	-1.1487	-0.00064642	3.5214	0.0019816	2.3727	0.0013352	562.7432614841817	101.74	0.68376	100.22	99.951	100.63	-1.5211					23	12	3	0	0	0	0.027426	1	6940	6940		56.721	1.9447	1	20901			39299	2032	32438	32461	42623	42623					-0.08897846159788969
NECLWTDML	9	Unmodified	_NECLWTDML_					0	0	0		ENSG00000100234|ENST00000266085|TIMP3	ENSG00000100234|ENST00000266085|TIMP3	ENSG00000100234|ENST00000266085|TIMP3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	562.741185	1123.46782	1.3353	0.00075144	1.4686	0.00082644	2.8039	0.0015779	562.7420615866642	102.46	0.63217	100.26	99.99	100.62	-2.1994	0.023074	-0.0013484	NaN	56.721	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13649			39300	2032	32438	32461							-0.08897846159788969
NECTQAEIL	9	Unmodified	_NECTQAEIL_					0	0	0			REV__nc|ENSG00000068024|P56524-2|HDAC4	REV__nc|ENSG00000068024|P56524-2|HDAC4	MSMS	OvCa9_classI_Rep4_	4	510.7345275878906	2	510.736957	1019.45936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.34	1	120.98	120.48	121.48	-1.3666								0	0	0	0.17776	1	11548	11548		37.812	2.1932	1		+		39301	16846	32439	32462	42624	42624					-0.04959076804743745
NECYLKIPC	9	Unmodified	_NECYLKIPC_					0	0	0		ENST00000433048.1_1_7:109599683-109600109:-|nuORF	ENST00000433048.1_1_7:109599683-109600109:-|nuORF	ENST00000433048.1_1_7:109599683-109600109:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.7807006835938	2	541.754095	1081.49364	-1.034	-0.00056016	1.8286	0.00099065	0.79463	0.0004305	541.7551449668603	103.47	0.2586	101.35	101.22	101.48	-2.1192					7	4	2	0	0	0	0.027453	1	9350	9350		30.318	6.795	1	35906			39302	11821	32440	32463	42625	42625					-0.0438495191747279
NEDALIEIL	9	Unmodified	_NEDALIEIL_					0	0	0		ENSG00000138772|ENST00000264908|ANXA3	ENSG00000138772|ENST00000264908|ANXA3	ENSG00000138772|ENST00000264908|ANXA3	MULTI-MSMS	OvCa99_classI_Rep5	1	515.279052734375	2	515.276772	1028.53899	2.1426	0.001104	-0.080892	-4.1682E-05	2.0617	0.0010624	515.2765929433157	120.81	1.1956	120.81	120.61	121.8	0					64	26	4	0	0	0	0.19758	1	13877	13877		76.774	14.667	1	2042800			39303	4729	32441	32464	42626	42626					0.02586313140909624
NEDDSSVEI	9	Unmodified	_NEDDSSVEI_					0	0	0		ENSG00000187741|ENST00000389301|FANCA;nc|ENSG00000187741|O15360-3|FANCA;FANCA|p.E886Rfs*3|1|0.09|ENSG00000187741|chr16:89765012-89765012|C/-|frameshift_variant;ENST00000567284.6_1_16:89836854-89845216:-|nuORF	ENSG00000187741|ENST00000389301|FANCA	ENSG00000187741|ENST00000389301|FANCA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.80035400390625	2	504.211826	1006.4091	0.60427	0.00030468	0.71005	0.00035802	1.3143	0.0006627	504.21209951166355	97.229	0.65353	94.818	94.531	95.184	-2.4105					21	12	3	0	0	0	0.02744	1	8628	8628		62.107	23.301	1	26477			39304	8427	32442	32465	42627	42627					-0.09384907928881603
NEDDSSVEI	9	Unmodified	_NEDDSSVEI_					0	0	0		ENSG00000187741|ENST00000389301|FANCA;nc|ENSG00000187741|O15360-3|FANCA;FANCA|p.E886Rfs*3|1|0.09|ENSG00000187741|chr16:89765012-89765012|C/-|frameshift_variant;ENST00000567284.6_1_16:89836854-89845216:-|nuORF	ENSG00000187741|ENST00000389301|FANCA	ENSG00000187741|ENST00000389301|FANCA	MULTI-MATCH	OvCa9_classI_Rep3	3		2	504.211826	1006.4091	-1.2632	-0.00063694	2.0547	0.001036	0.79144	0.00039905	504.21274001213266	96.509	0.71955	94.681	94.471	95.191	-1.8286	-0.06878	0.00069793	NaN	62.107	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20143			39305	8427	32442	32465							-0.09384907928881603
NEDFDVKTYT	10	Unmodified	_NEDFDVKTYT_					0	0	0		nc|ENSG00000164597|Q9UP83-3|COG5;ENSG00000164597|ENST00000297135|COG5;nc|ENSG00000164597|Q9UP83|COG5;nc|ENSG00000164597|Q9UP83-1|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	nc|ENSG00000164597|Q9UP83-3|COG5	MULTI-SECPEP	OvCa99_classI_Rep5	1	615.8604125976562	2	616.2775	1230.54045	1.7366	0.0010702	3.1236	0.001925	4.8602	0.0029953	616.2787778018161	136.03	0.56473	136.03	135.78	136.35	0					23	11	3	0	0	0	0.026826	1	15890	15890		22.58	0	1	135130			39306	6469	32443	32466	42628	42628					-0.06560097560986833
NEDGFFKI	8	Unmodified	_NEDGFFKI_					0	0	0		ENST00000559133.5_3_15:48703189-48720097:-|nuORF;ENSG00000166147|ENST00000316623|FBN1	ENST00000559133.5_3_15:48703189-48720097:-|nuORF	ENST00000559133.5_3_15:48703189-48720097:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.25439453125	2	485.23745	968.460347	-0.056256	-2.7298E-05	-4.4549	-0.0021617	-4.5111	-0.002189	485.235233971297	62.051	1.3018	58.593	58.244	59.546	-3.4577					50	26	3	0	0	0	0.028476	1	4391	4391		65.803	2.4969	1	670000			39307	6642	32444	32467	42629	42629					-0.025144943735199377
NEDGFFKI	8	Unmodified	_NEDGFFKI_					0	0	0		ENST00000559133.5_3_15:48703189-48720097:-|nuORF;ENSG00000166147|ENST00000316623|FBN1	ENST00000559133.5_3_15:48703189-48720097:-|nuORF	ENST00000559133.5_3_15:48703189-48720097:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	485.23745	968.460347	-1.32	-0.00064053	-2.9809	-0.0014464	-4.3009	-0.002087	485.23595856424134	61.566	0.87338	58.807	58.413	59.286	-2.7593	0.10657	0.00088399	NaN	65.803	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108350			39308	6642	32444	32467							-0.025144943735199377
NEDIYKLAF	9	Unmodified	_NEDIYKLAF_					0	0	0		ENSG00000102753|ENST00000261667|KPNA3	ENSG00000102753|ENST00000261667|KPNA3	ENSG00000102753|ENST00000261667|KPNA3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	556.3335571289062	2	556.784764	1111.55498	-0.11409	-6.3522E-05	-1.0354	-0.00057651	-1.1495	-0.00064004	556.7830527208597	70.363	0.44173	66.882	66.688	67.13	-3.4812					19	8	4	0	0	0	0.027462	1	5321	5321		17.365	0	1	27627			39309	2251	32445	32468	42630	42630					0.003660193778159737
NEDNETLAW	9	Unmodified	_NEDNETLAW_					0	0	0		ENSG00000144481|ENST00000324695|TRPM8;nc|ENSG00000144481|Q7Z2W7-4|TRPM8;ENST00000444298.5_1_2:234856214-234923253:+|nuORF	ENSG00000144481|ENST00000324695|TRPM8	ENSG00000144481|ENST00000324695|TRPM8	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.3095703125	2	546.235635	1090.45672	-0.18383	-0.00010041	-4.2752	-0.0023353	-4.459	-0.0024357	546.2332033157836	51.217	0.12807	51.217	51.12	51.248	0					4	2	2	0	0	0	0.027462	1	3934	3934		16.473	8.2419	1	84022			39310	5153	32446	32469	42631	42631					-0.08489208938044612
NEDPEWIL	8	Unmodified	_NEDPEWIL_					0	0	0		ENST00000560833.1_1_15:77236155-77240950:+|nuORF;chr15:76931985-76943758|413|12.74|0.41|4.95|+|ENST00000394883|RCN2,RCN2;ENSG00000117906|ENST00000394885|RCN2;nc|ENSG00000117906|Q14257-2|RCN2	ENST00000560833.1_1_15:77236155-77240950:+|nuORF	ENST00000560833.1_1_15:77236155-77240950:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.2932434082031	2	508.24019	1014.46583	-0.46049	-0.00023404	-1.2199	-0.00061998	-1.6803	-0.00085402	508.23920027412123	102.95	0.52319	100.75	100.52	101.04	-2.1994					12	9	2	0	0	0	0.028476	1	9256	9256		27.882	0	1	14783			39311	363	32447	32470	42632	42632					-0.0408281558170529
NEDQGGFVF	9	Unmodified	_NEDQGGFVF_					0	0	0			REV__ENSG00000261609|ENST00000648994|GAN	REV__ENSG00000261609|ENST00000648994|GAN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.8114013671875	2	506.722164	1011.42977	-0.97214	-0.00049261	4.0934	0.0020742	3.1213	0.0015816	506.72325480488206	101.36	0.13842	99.089	98.974	99.113	-2.2665					4	2	2	0	0	0	0.027453	1	9092	9092		45.972	6.7194	1	11242	+		39312	23569	32448	32471	42633	42633					-0.07548272758549501
NEDQKLKFL	9	Unmodified	_NEDQKLKFL_					0	0	0		ENSG00000103550|ENST00000219837|KNOP1	ENSG00000103550|ENST00000219837|KNOP1	ENSG00000103550|ENST00000219837|KNOP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.3499755859375	2	567.811313	1133.60807	-0.32791	-0.00018619	1.3276	0.00075381	0.99966	0.00056762	567.8130509454412	92.9	0.55396	90.393	89.959	90.513	-2.5072					15	10	2	0	0	0	0.02744	1	8050	8050		62.107	0	1	14251			39313	2331	32449	32472	42634	42634					0.04661397160475644
NEDVAVKTKTP	11	Unmodified	_NEDVAVKTKTP_					0	0	0			REV__ENSG00000119147|ENST00000238044|ECRG4	REV__ENSG00000119147|ENST00000238044|ECRG4	MULTI-SECPEP	OvCa99_classI_Rep5	1	602.3009033203125	2	601.324785	1200.63502	2.7954	0.001681	-1.4146	-0.00085062	1.3809	0.00083034	601.3240741636464	75.173	0.40697	75.173	74.962	75.369	0					23	9	4	0	0	0	0.02523	1	7474	7474		37.6	3.5134	1	664990	+		39314	18428	32450	32473	42635	42635					0.04272460980996584
NEEAQLALL	9	Unmodified	_NEEAQLALL_					0	0	0			REV__ENSG00000111832|ENST00000466444|RWDD1	REV__ENSG00000111832|ENST00000466444|RWDD1	MULTI-MSMS	OvCa99_classI_Rep5	1	500.77081298828125	2	500.769114	999.523675	-0.21143	-0.00010588	0.4087	0.00020467	0.19728	9.8791E-05	500.76929515914105	73.447	0.67279	73.447	73.195	73.868	0					38	16	4	0	0	0	0.053172	1	7206	7206		116.9	7.4253	1	6322200	+		39315	18063	32451	32474	42636	42636					0.023894463437159175
NEEAQLALL	9	Unmodified	_NEEAQLALL_					0	0	0			REV__ENSG00000111832|ENST00000466444|RWDD1	REV__ENSG00000111832|ENST00000466444|RWDD1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	500.769114	999.523675	-1.0181	-0.00050984	1.0987	0.00055021	0.080619	4.0371E-05	500.76951655957583	75.419	1.501	73.565	72.913	74.414	-1.854	0.10705	0.00023922	NaN	116.9	81	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	671500	+		39316	18063	32451	32474							0.023894463437159175
NEEAQLALL	9	Unmodified	_NEEAQLALL_					0	0	0			REV__ENSG00000111832|ENST00000466444|RWDD1	REV__ENSG00000111832|ENST00000466444|RWDD1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	500.769114	999.523675	-0.57387	-0.00028738	0.74899	0.00037507	0.17511	8.7692E-05	500.76944400399447	76.3	1.2362	73.361	73.033	74.269	-2.9389	-0.096794	-0.00011106	NaN	116.9	85	25	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2339200	+		39317	18063	32451	32474							0.023894463437159175
NEEDSKIEL	9	Unmodified	_NEEDSKIEL_					0	0	0		nc|ENSG00000120802|P42167-3|TMPO;nc|ENSG00000120802|P42167-2|TMPO;ENSG00000120802|ENST00000556029|TMPO	nc|ENSG00000120802|P42167-3|TMPO	nc|ENSG00000120802|P42167-3|TMPO	MULTI-MSMS	OvCa99_classI_Rep5	1	538.7598876953125	2	538.758943	1075.50333	-0.65482	-0.00035279	0.56017	0.0003018	-0.094649	-5.0993E-05	538.7591130091778	68.129	1.3045	68.129	67.88	69.184	0					64	31	4	0	0	0	0.027568	2	6430	6402;6430		138.06	10.601	1	6859100			39318	3454	32452	32475	42637;42638	42638					-0.03139769106746826
NEEEHRTYL	9	Unmodified	_NEEEHRTYL_					0	0	0		nc|ENSG00000135218|P16671-4|CD36;nc|ENSG00000135218|P16671-3|CD36;ENSG00000135218|ENST00000447544|CD36;ENST00000464213.1_1_7:80300260-80302160:+|nuORF	nc|ENSG00000135218|P16671-4|CD36	nc|ENSG00000135218|P16671-4|CD36	MULTI-MSMS	OvCa99_classI_Rep5	1	595.775390625	2	595.775459	1189.53637	-0.096137	-5.7276E-05	0.11835	7.0512E-05	0.022217	1.3237E-05	595.7754448703374	40.89	0.70951	40.89	40.666	41.375	0					40	15	4	0	0	0	0.060996	1	2508	2508		112.41	38.156	1	777470			39319	4358	32453	32476	42639	42639					-0.0508214226401833
NEEGKLINI	9	Unmodified	_NEEGKLINI_					0	0	0		tr|A0A7D6ZXZ6|A0A7D6ZXZ6_9CLOTDegVfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00220PE=4SV=1	tr|A0A7D6ZXZ6|A0A7D6ZXZ6_9CLOTDegVfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00220PE=4SV=1	tr|A0A7D6ZXZ6|A0A7D6ZXZ6_9CLOTDegVfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00220PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.2827758789062	2	515.282389	1028.55022	-1.8263	-0.00094104	1.5851	0.00081679	-0.24112	-0.00012424	515.2832089324711	107.23	3.0946	105.36	105.01	108.11	-1.8785					136	60	5	0	0	0	0.51177	1	9899	9899		41.427	3.6151	1	4662000			39320	35901	32454	32477	42640	42640					0.03709135235044414
NEEIKDGKI	9	Unmodified	_NEEIKDGKI_					0	0	0			REV__tr|A0A7D7A086|A0A7D7A086_9CLOTAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=accDPE=3SV=1	REV__tr|A0A7D7A086|A0A7D7A086_9CLOTAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=accDPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	523.2831420898438	2	523.279846	1044.54514	-0.067931	-3.5547E-05	0.9272	0.00048518	0.85927	0.00044964	523.2801940006543	103.37	0.58905	103.37	103.14	103.73	0					32	13	3	0	0	0	0.1944	1	11551	11551		77.318	20.597	1	1660300	+		39321	32441	32455	32478	42641	42641					0.02464831372435583
NEEIQNPFI	9	Unmodified	_NEEIQNPFI_					0	0	0		tr|A0A7D6VVL9|A0A7D6VVL9_9CLOTPRDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00870PE=4SV=1	tr|A0A7D6VVL9|A0A7D6VVL9_9CLOTPRDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00870PE=4SV=1	tr|A0A7D6VVL9|A0A7D6VVL9_9CLOTPRDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00870PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.7988891601562	2	552.272021	1102.52949	-0.44002	-0.00024301	0.18515	0.00010225	-0.25487	-0.00014076	552.2720880147508	93.957	0.70866	91.45	91.212	91.921	-2.5072					22	14	2	0	0	0	0.027459	1	8214	8214		52.937	17.318	1	47117			39322	35224	32456	32479	42642	42642					-0.0176745514461345
NEEIQNPFI	9	Unmodified	_NEEIQNPFI_					0	0	0		tr|A0A7D6VVL9|A0A7D6VVL9_9CLOTPRDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00870PE=4SV=1	tr|A0A7D6VVL9|A0A7D6VVL9_9CLOTPRDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00870PE=4SV=1	tr|A0A7D6VVL9|A0A7D6VVL9_9CLOTPRDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00870PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	552.272021	1102.52949	1.1055	0.00061051	-0.50894	-0.00028107	0.59652	0.00032944	552.2716490116984	92.622	0.7754	91.454	91.129	91.904	-1.168	-0.058682	-0.00079358	NaN	67.494	25	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23524			39323	35224	32456	32479							-0.0176745514461345
NEEIQNPFI	9	Unmodified	_NEEIQNPFI_					0	0	0		tr|A0A7D6VVL9|A0A7D6VVL9_9CLOTPRDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00870PE=4SV=1	tr|A0A7D6VVL9|A0A7D6VVL9_9CLOTPRDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00870PE=4SV=1	tr|A0A7D6VVL9|A0A7D6VVL9_9CLOTPRDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00870PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	552.272021	1102.52949	-1.5959	-0.00088135	3.4522	0.0019066	1.8563	0.0010252	552.2742415493536	93.597	0.30403	91.635	91.476	91.78	-1.9617	0.12221	0.0035817	NaN	67.494	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12191			39324	35224	32456	32479							-0.0176745514461345
NEEIRSISL	9	Unmodified	_NEEIRSISL_					0	0	0			REV__tr|A0A7D6VTI7|A0A7D6VTI7_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_17230PE=3SV=1	REV__tr|A0A7D6VTI7|A0A7D6VTI7_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_17230PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.273193359375	2	530.785296	1059.55604	0.38369	0.00020366	7.3992E-05	3.9274E-08	0.38376	0.00020369	530.7852805092692	73.933	0.68834	73.933	73.678	74.366	0					32	17	3	0	0	0	0.027462	1	7260	7260		21.96	0	1	2037600	+		39325	31607	32457	32480	42643	42643					0.028642337467317702
NEEKLLAID	9	Unmodified	_NEEKLLAID_					0	0	0		tr|A0A7D6ZU62|A0A7D6ZU62_9CLOTLactonasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22920PE=3SV=1	tr|A0A7D6ZU62|A0A7D6ZU62_9CLOTLactonasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22920PE=3SV=1	tr|A0A7D6ZU62|A0A7D6ZU62_9CLOTLactonasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22920PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.3353881835938	2	522.782222	1043.54989	2.0321	0.0010623	-3.2443	-0.0016961	-1.2122	-0.00063374	522.7826762877945	101.13	0.45871	101.13	100.9	101.36	0					16	10	3	0	0	0	0.027462	1	11233	11233		37.812	14.289	1	243440			39326	35768	32458	32481	42644	42644					0.02985715515183074
NEEKNGWSTE	10	Unmodified	_NEEKNGWSTE_					0	0	0			REV__chr7:97970730-97973092|228|12.07|0.0|20.2|-|0|TE_info:FLAM_C,FLAM_C_dup9538,Alu,SINE,donor,-,97973092,97973175|CCZ1P1,None|2	REV__chr7:97970730-97973092|228|12.07|0.0|20.2|-|0|TE_info:FLAM_C,FLAM_C_dup9538,Alu,SINE,donor,-,97973092,97973175|CCZ1P1,None|2	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.8115234375	2	597.257099	1192.49965	2.3437	0.0013998	3.1643	0.0018899	5.508	0.0032897	597.2588716806241	76.345	0.84555	76.345	76.115	76.961	0					52	20	4	0	0	0	0.026906	1	7632	7632		33.922	10.399	1	3933100	+		39327	16101	32459	32482	42645	42645					-0.08890438880598595
NEEMLCQEF	9	Unmodified	_NEEMLCQEF_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;ENST00000461591.5_1_3:142720470-142741912:+|nuORF	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.2647094726562	2	571.728274	1141.442	1.7008	0.0009724	0.46196	0.00026412	2.1628	0.0012365	571.7283674417824	80.726	0.59216	80.726	80.487	81.08	0					29	13	3	0	0	0	0.027462	1	8321	8321		16.473	0	1	1041400			39328	6353	32460	32483	42646	42646					-0.12306740402073046
NEENFIDLN	9	Unmodified	_NEENFIDLN_					0	0	0		IFT57-MLXIP|1|fusion;ENSG00000114446|ENST00000264538|IFT57	IFT57-MLXIP|1|fusion	IFT57-MLXIP|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.8081665039062	2	554.251286	1106.48802	-1.4202	-0.00078715	0.87821	0.00048675	-0.54199	-0.0003004	554.2516583693993	108.56	0.61246	106.84	106.62	107.23	-1.7256					29	11	3	0	0	0	0.02744	1	9977	9977		71.877	11.759	1	69231			39329	14498	32461	32484	42647	42647					-0.060966359039412055
NEENGPFLK	9	Unmodified	_NEENGPFLK_					0	0	0			REV__ENSG00000180346|ENST00000603357|TIGD2	REV__ENSG00000180346|ENST00000603357|TIGD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.31494140625	2	524.258914	1046.50327	0.94249	0.00049411	-0.092427	-4.8456E-05	0.85006	0.00044565	524.2588290670352	123.32	0.47001	123.32	123.09	123.56	0					18	9	3	0	0	0	0.027462	1	14193	14193		26.693	6.6961	1	42540	+		39330	22168	32462	32485	42648	42648					-0.018117243160986618
NEENLSSEKA	10	Unmodified	_NEENLSSEKA_					0	0	0		nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	MULTI-MSMS	OvCa99_classI_Rep5	1	560.7604370117188	2	560.759475	1119.5044	3.0492	0.0017099	-3.0098	-0.0016878	0.03943	2.2111E-05	560.7576044309283	100.57	0.78429	100.57	100.32	101.11	0					43	18	3	0	0	0	0.45822	1	11156	11156		60.118	5.3419	1	2320900			39331	5408	32463	32486	42649	42649					-0.050575547378457486
NEEPKKPEPA	10	Unmodified	_NEEPKKPEPA_					0	0	0			REV__ENST00000432307.1_1_X:110862947-110863739:-|nuORF	REV__ENST00000432307.1_1_X:110862947-110863739:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	569.7882080078125	2	569.790578	1137.5666	-0.9559	-0.00054466	-0.35458	-0.00020204	-1.3105	-0.0007467	569.7902502017694	146.03	1.5267	144.59	144.15	145.67	-1.4357					62	26	4	0	0	0	0.49595	1	14357	14357		54.722	3.3869	1	170700	+		39332	16756	32464	32487	42650	42650					0.0033221640117062634
NEEPKKPEPA	10	Unmodified	_NEEPKKPEPA_					0	0	0			REV__ENST00000432307.1_1_X:110862947-110863739:-|nuORF	REV__ENST00000432307.1_1_X:110862947-110863739:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	569.790578	1137.5666	-2.624	-0.0014951	0.98681	0.00056227	-1.6372	-0.00093286	569.7909828679897	144.9	0.94514	144.68	144.44	145.38	-0.22696	0.04744	0.00056305	NaN	54.722	47	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92390	+		39333	16756	32464	32487							0.0033221640117062634
NEEPKKPEPA	10	Unmodified	_NEEPKKPEPA_					0	0	0			REV__ENST00000432307.1_1_X:110862947-110863739:-|nuORF	REV__ENST00000432307.1_1_X:110862947-110863739:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	569.790578	1137.5666	-3.6297	-0.0020682	1.8665	0.0010635	-1.7632	-0.0010046	569.7915243755256	145.59	1.2426	144.61	144.29	145.53	-0.97299	-0.013736	0.0015655	NaN	54.722	52	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97489	+		39334	16756	32464	32487							0.0033221640117062634
NEEQEAEKL	9	Unmodified	_NEEQEAEKL_					0	0	0		ENST00000507320.5_1_11:5624851-5625952:+|nuORF;nc|ENSG00000121236|Q9C030|TRIM6;ENSG00000121236|ENST00000380097|TRIM6	ENST00000507320.5_1_11:5624851-5625952:+|nuORF	ENST00000507320.5_1_11:5624851-5625952:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	545.3180541992188	2	545.256568	1088.49858	-1.822	-0.00099347	-1.8341	-0.0010001	-3.6561	-0.0019935	545.2551924546223	62.185	0.19742	59.426	59.286	59.483	-2.7593					5	3	2	0	0	0	0.027137	1	4660	4660		67.494	0	1	8140			39335	3474	32465	32488	42651	42651					-0.042126532495103675
NEERNLTKKI	10	Unmodified	_NEERNLTKKI_					0	0	0		ENSG00000169641|ENST00000302291|LUZP1;LUZP1|p.P700Afs*20|1|0.05|ENSG00000169641|chr1:23092164-23092165|-/GC|frameshift_variant;LUZP1|p.R817Sfs*50|1|0.07|ENSG00000169641|chr1:23091811-23091811|C/-|frameshift_variant;nc|ENSG00000169641|Q86V48-2|LUZP1;LUZP1|p.S996Rfs*52|1|0.05|ENSG00000169641|chr1:23091274-23091275|-/T|frameshift_variant;nc|ENSG00000169641|Q86V48-3|LUZP1	ENSG00000169641|ENST00000302291|LUZP1	ENSG00000169641|ENST00000302291|LUZP1	MSMS	OvCa99_classI_Rep5	1	415.56988525390625	3	415.570093	1243.68845	NaN	NaN	NaN	NaN	NaN	NaN	NaN	39.519	1	39.519	39.019	40.019	0								0	0	0	0.092963	1	2330	2330		72.879	0	1				39336	7026	32466	32489	42652	42652					0.07635258483514917
NEESDGVDLEG	11	Unmodified	_NEESDGVDLEG_					0	0	0			REV__nc|ENSG00000131351|Q9BT25-2|HAUS8	REV__nc|ENSG00000131351|Q9BT25-2|HAUS8	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.796630859375	2	582.238572	1162.46259	0.54753	0.00031879	-1.8663	-0.0010867	-1.3188	-0.00076787	582.236921752649	132.44	0.37869	132.44	132.27	132.65	0					16	7	3	0	0	0	0.025701	1	15371	15371		22.58	10.373	1	58780	+		39337	19006	32467	32490	42653	42653					-0.11214155217021471
NEESLYYI	8	Unmodified	_NEESLYYI_					0	0	0		nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000100485|ENST00000216373|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7936401367188	2	515.740022	1029.46549	-1.0724	-0.0005531	-1.6259	-0.00083855	-2.6984	-0.0013917	515.7399335030724	93.025	0.45108	90.518	90.312	90.763	-2.5072					14	8	2	0	0	0	0.028476	1	8122	8122		65.803	0	1	17320			39338	2076	32468	32491	42654	42654					-0.048062353015666304
NEESYRKV	8	Unmodified	_NEESYRKV_					0	0	0		tr|A0A7D6VVP4|A0A7D6VVP4_9CLOT2-iminoacetatesynthaseThiHOS=ClostridiumintestinaleOX=36845GN=thiHPE=4SV=1	tr|A0A7D6VVP4|A0A7D6VVP4_9CLOT2-iminoacetatesynthaseThiHOS=ClostridiumintestinaleOX=36845GN=thiHPE=4SV=1	tr|A0A7D6VVP4|A0A7D6VVP4_9CLOT2-iminoacetatesynthaseThiHOS=ClostridiumintestinaleOX=36845GN=thiHPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.2847290039062	2	512.756538	1023.49852	0.46187	0.00023683	-0.29114	-0.00014928	0.17073	8.7544E-05	512.7560449172087	45.518	0.42203	45.518	45.245	45.667	0					14	9	2	0	0	0	0.028476	1	3120	3120		25.45	2.4077	1	157330			39339	35230	32469	32492	42655	42655					-0.012286084588595259
NEETQVRTE	9	Unmodified	_NEETQVRTE_					0	0	0		ENSG00000139971|ENST00000267485|ARMH4;nc|ENSG00000139971|Q86TY3-2|ARMH4;ENST00000334342.5_1_14:58583046-58606076:-|nuORF	ENSG00000139971|ENST00000267485|ARMH4	ENSG00000139971|ENST00000267485|ARMH4	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.8111572265625	2	553.259642	1104.50473	1.0792	0.00059706	3.9272	0.0021728	5.0064	0.0027698	553.2619157129358	131.43	0.51738	131.43	131.15	131.67	0					13	10	2	0	0	0	0.027418	1	15263	15263		56.434	12.057	1	49463			39340	4814	32470	32493	42656	42656					-0.043341350179844085
NEETWWHGM	9	Unmodified	_NEETWWHGM_					0	0	0			REV__ENST00000260746.5_1_10:104459145-104459199:-|nuORF	REV__ENST00000260746.5_1_10:104459145-104459199:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	595.3294067382812	2	595.240198	1188.46584	-0.2718	-0.00016179	4.3518	0.0025904	4.08	0.0024286	595.2420445870613	95.041	0.60157	92.572	92.21	92.811	-2.4685					18	11	3	0	0	0	0.027462	1	8328	8328		11.511	0	1	17505	+		39341	23934	32471	32494	42657	42657					-0.12085138853353783
NEEVMNKKF	9	Unmodified	_NEEVMNKKF_					0	0	0			REV__tr|A0A553SJB6|A0A553SJB6_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_16410PE=4SV=1	REV__tr|A0A553SJB6|A0A553SJB6_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_16410PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	569.8345947265625	2	569.781699	1137.54884	-0.72191	-0.00041133	1.5794	0.00089992	0.8575	0.00048859	569.7835099791632	99.802	0.21158	98.117	97.985	98.196	-1.685					6	3	2	0	0	0	0.027462	1	6736	6736		37.812	2.1932	1	7222.6	+		39342	29990	32472	32495	42658	42658					-0.014428221253638185
NEFCLNEEQ	9	Unmodified	_NEFCLNEEQ_					0	0	0			REV__ENST00000547357.5_1_12:82752311-82853681:+|nuORF	REV__ENST00000547357.5_1_12:82752311-82853681:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.823974609375	2	563.229496	1124.44444	0.82211	0.00046304	-1.6224	-0.00091379	-0.8003	-0.00045075	563.7289962109564	45.388	0.33691	45.388	45.245	45.582	0					11	7	3	0	0	0	0.027455	1	3140	3140		42.396	0	1	87462	+		39343	18825	32473	32496	42659	42659					-0.11280568672759728
NEFEATQKL	9	Unmodified	_NEFEATQKL_					0	0	0		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.272705078125	2	540.272021	1078.52949	-1.5091	-0.0008153	1.5715	0.00084906	0.062477	3.3755E-05	540.2728602107904	71.11	1.4084	67.654	67.393	68.802	-3.4563					72	28	4	0	0	0	0.012992	3	5404	5404;5415;5428		159.28	38.655	1	1079800			39344	6512	32474	32497	42660;42661;42662	42660					-0.006634551446268233
NEFEATQKL	9	Unmodified	_NEFEATQKL_					0	0	0		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	540.272021	1078.52949	-0.64723	-0.00034968	0.97808	0.00052843	0.33085	0.00017875	540.2724859053973	70.207	1.5697	67.636	67.066	68.635	-2.5707	-0.008903	-0.00029915	NaN	159.28	70	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	239160			39345	6512	32474	32497							-0.006634551446268233
NEFGPLVKI	9	Unmodified	_NEFGPLVKI_					0	0	0			REV__ENSG00000121316|ENST00000240617|PLBD1	REV__ENSG00000121316|ENST00000240617|PLBD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.936767578125	2	508.792392	1015.57023	0.37758	0.00019211	-3.9676	-0.0020187	-3.59	-0.0018266	508.79040516536554	73.868	0.68799	73.868	73.636	74.324	0					41	17	3	0	0	0	0.027448	1	7246	7246		27.882	0	1	2719100	+		39346	18539	32475	32498	42663	42663					0.06306930965661195
NEFKKNYIL	9	Unmodified	_NEFKKNYIL_					0	0	0		tr|A0A7D6VUB7|A0A7D6VUB7_9CLOTDNApolymeraseIIIsubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_02645PE=3SV=1	tr|A0A7D6VUB7|A0A7D6VUB7_9CLOTDNApolymeraseIIIsubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_02645PE=3SV=1	tr|A0A7D6VUB7|A0A7D6VUB7_9CLOTDNApolymeraseIIIsubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_02645PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	584.8230590820312	2	584.821681	1167.62881	1.1243	0.00065751	1.0883	0.00063644	2.2126	0.0012939	584.8221466707196	123.23	0.92691	123.23	122.86	123.79	0					49	19	4	0	0	0	0.070405	1	14195	14195		107.01	5.7549	1	1003700			39347	35175	32476	32499	42664	42664					0.05169987540148213
NEFPEPIKL	9	Unmodified	_NEFPEPIKL_					0	0	0		ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	MULTI-MSMS	OvCa99_classI_Rep5	1	543.796630859375	2	543.795132	1085.57571	2.1564	0.0011726	-0.7048	-0.00038326	1.4516	0.00078937	543.7948283137953	107.4	2.2602	107.4	106.89	109.15	0					187	52	5	0	0	0	0.010478	4	12118	12088;12118;12148;12178		167.23	34.471	1	132780000			39348	1542	32477	32500	42665;42666;42667;42668	42666					0.036346097574551095
NEFPEPIKL	9	Unmodified	_NEFPEPIKL_					0	0	0		ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	MULTI-MSMS	OvCa9_classI_Rep2	2	543.7944946289062	2	543.795132	1085.57571	-0.37132	-0.00020192	-0.53048	-0.00028847	-0.9018	-0.0004904	543.7949459368973	106.91	2.3099	106.6	106.27	108.58	-0.30836					120	46	5	0	0	0	0.0078313	12	9975	9955;9957;9963;9969;9975;9981;9987;9993;9999;10007;10013;10019		209.84	64.684	1	1968900			39349	1542	32477	32500	42669;42670;42671;42672;42673;42674;42675;42676;42677;42678;42679;42680	42673					0.036346097574551095
NEFPEPIKL	9	Unmodified	_NEFPEPIKL_					0	0	0		ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	MULTI-MSMS	OvCa9_classI_Rep3	3	543.7943115234375	2	543.795132	1085.57571	0.23161	0.00012595	-0.79426	-0.00043192	-0.56266	-0.00030597	543.7946646282795	107.74	3.3384	106.52	106.14	109.48	-1.2197					133	63	5	0	0	0	0.0078313	9	7660	7648;7654;7660;7666;7672;7678;7684;7691;7697		209.84	48.112	1	2113600			39350	1542	32477	32500	42681;42682;42683;42684;42685;42686;42687;42688;42689	42683					0.036346097574551095
NEFPEPIKL	9	Unmodified	_NEFPEPIKL_					0	0	0		ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	ENSG00000075785|ENST00000265062|RAB7A	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.7963256835938	2	543.795132	1085.57571	-2.58	-0.001403	1.609	0.00087499	-0.97094	-0.00052799	543.795957768216	108.22	2.6138	106.49	106.17	108.79	-1.7256					109	50	5	0	0	0	0.0070026	6	9896	9885;9896;9920;9932;9946;9971		185.72	58.257	1	2628600			39351	1542	32477	32500	42690;42691;42692;42693;42694;42695	42691					0.036346097574551095
NEFPHAIAM	9	Unmodified	_NEFPHAIAM_					0	0	0		DOCK4|p.F1456Lfs*4|1|0.11|ENSG00000128512|chr7:111755521-111755536|ACGCTTTTCCACTTCA/-|frameshift_variant;nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4	DOCK4|p.F1456Lfs*4|1|0.11|ENSG00000128512|chr7:111755521-111755536|ACGCTTTTCCACTTCA/-|frameshift_variant;nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.2813110351562	2	515.244752	1028.47495	-1.085	-0.00055903	-2.7654	-0.0014249	-3.8504	-0.0019839	515.2435033960271	41.216	0.62183	38.236	38.075	38.696	-2.9804					15	11	2	0	0	0	0.027462	1	1847	1847		34.173	18.531	1	12596			39352	3882;758	32478	32501	42696	42696					-0.0381474549703853
NEFPVIVRL	9	Unmodified	_NEFPVIVRL_					0	0	0		ENSG00000154237|ENST00000388948|LRRK1;LRRK1|p.D987Efs*12|1|0.21|ENSG00000154237|chr15:101029229-101029230|-/G|frameshift_variant;nc|ENSG00000154237|Q38SD2-2|LRRK1	ENSG00000154237|ENST00000388948|LRRK1	ENSG00000154237|ENST00000388948|LRRK1	MULTI-MSMS	OvCa99_classI_Rep5	1	543.819580078125	2	543.818941	1085.62333	2.4219	0.0013171	-0.63892	-0.00034746	1.783	0.00096961	543.8186739116553	121.63	0.68318	121.63	121.21	121.9	0					30	14	3	0	0	0	0.094791	1	13989	13989		98.582	34.375	1	741770			39353	5721	32479	32502	42697	42697					0.08394308748324875
NEFVHINNL	9	Unmodified	_NEFVHINNL_					0	0	0		nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MSMS	OvCa9_classI_Rep2	2	550.2785034179688	2	550.28018	1098.54581	0.037834	2.0819E-05	-0.63958	-0.00035195	-0.60175	-0.00033113	550.2797274331174	94.339	1.5414	93.239	92.853	94.395	-1.0995					87	30	4	0	0	0	0.043101	3	8454	8443;8448;8454		124.08	46.763	1	569510			39354	3362	32480	32503	42698;42699;42700	42700					0.0004767081213685742
NEFVHINNL	9	Unmodified	_NEFVHINNL_					0	0	0		nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MSMS	OvCa9_classI_Rep3	3	550.2808837890625	2	550.28018	1098.54581	-1.0577	-0.00058203	0.66473	0.00036579	-0.39296	-0.00021624	550.2804118043158	95.125	1.6907	93.23	92.864	94.554	-1.8956					82	33	4	0	0	0	0.03923	5	6182	6182;6188;6193;6200;6206		127.46	44.368	1	754770			39355	3362	32480	32503	42701;42702;42703;42704;42705	42701					0.0004767081213685742
NEFVHINNL	9	Unmodified	_NEFVHINNL_					0	0	0		nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.2817993164062	2	550.28018	1098.54581	-1.0974	-0.00060389	0.58499	0.00032191	-0.51243	-0.00028198	550.2803988898792	95.705	1.4631	93.279	93.005	94.468	-2.4256					50	28	2	0	0	0	0.066102	2	8423	8423;8448		109.48	29.766	1	757920			39356	3362	32480	32503	42706;42707	42706					0.0004767081213685742
NEGKHLYTL	9	Unmodified	_NEGKHLYTL_					0	0	0		ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.7833862304688	2	537.782556	1073.55056	-0.54221	-0.00029159	0.063497	3.4148E-05	-0.47871	-0.00025744	537.7824052024117	59.64	1.9274	56.248	55.655	57.582	-3.392					78	38	5	0	0	0	0.036986	2	3988	3988;3999		129.42	41.725	1	714340			39357	9013	32481	32504	42708;42709	42708					0.016725549548937124
NEGKHLYTL	9	Unmodified	_NEGKHLYTL_					0	0	0		ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	537.782556	1073.55056	-1.1524	-0.00061976	0.97603	0.00052489	-0.17639	-9.4862E-05	537.7829671065493	58.946	1.9555	56.166	55.588	57.544	-2.7801	-0.041075	0.00024574	NaN	129.42	84	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269310			39358	9013	32481	32504							0.016725549548937124
NEGLYMLI	8	Unmodified	_NEGLYMLI_					0	0	0		tr|A0A7D6VTZ6|A0A7D6VTZ6_9CLOTprotein-tyrosine-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_18805PE=3SV=1	tr|A0A7D6VTZ6|A0A7D6VTZ6_9CLOTprotein-tyrosine-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_18805PE=3SV=1	tr|A0A7D6VTZ6|A0A7D6VTZ6_9CLOTprotein-tyrosine-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_18805PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	476.2276306152344	2	476.744053	951.473554	1.3952	0.00066514	0.5283	0.00025186	1.9235	0.000917	476.74390707309993	109.45	1.0262	109.45	109.11	110.13	0					28	22	2	0	0	0	0.028476	1	12481	12481		52.299	6.3472	1	63860			39359	35154	32482	32505	42710	42710					-0.004123795857708501
NEGNLPAPE	9	Unmodified	_NEGNLPAPE_					0	0	0		KIF24|p.S979A|1|0.06|ENSG00000186638|chr9:34256672-34256672|A/C|missense_variant	KIF24|p.S979A|1|0.06|ENSG00000186638|chr9:34256672-34256672|A/C|missense_variant	KIF24|p.S979A|1|0.06|ENSG00000186638|chr9:34256672-34256672|A/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.3116149902344	2	470.722164	939.429775	-0.39204	-0.00018454	1.1144	0.00052456	0.72233	0.00034002	470.72241635550057	52.161	0.48053	52.161	51.953	52.434	0					16	10	3	0	0	0	0.027447	1	4097	4097		39.253	17.293	1	190620			39360	14523	32483	32506	42711	42711					-0.04236272758578252
NEGNQIIYKL	10	Unmodified	_NEGNQIIYKL_					0	0	0		ENST00000528758.1_1_11:7507087-7531416:+|nuORF;ENSG00000183801|ENST00000329293|OLFML1	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	596.320556640625	2	596.322045	1190.62954	1.2914	0.00077009	-1.6211	-0.00096667	-0.32965	-0.00019658	596.3210019696437	90.002	1.0387	88.7	88.334	89.373	-1.302					68	20	4	0	0	0	0.15491	3	7938	7933;7938;7944		101.25	32.466	1	466590			39361	8108	32484	32507	42712;42713;42714	42713					0.04184782189190628
NEGNQIIYKL	10	Unmodified	_NEGNQIIYKL_					0	0	0		ENST00000528758.1_1_11:7507087-7531416:+|nuORF;ENSG00000183801|ENST00000329293|OLFML1	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	596.3231201171875	2	596.322045	1190.62954	0.14475	8.6315E-05	-0.41515	-0.00024756	-0.2704	-0.00016125	596.3217675698592	90.675	1.2696	88.595	88.056	89.326	-2.0805					68	24	4	0	0	0	0.016395	4	5652	5641;5645;5652;5659		152.06	72.348	1	797580			39362	8108	32484	32507	42715;42716;42717;42718	42717					0.04184782189190628
NEGNQIIYKL	10	Unmodified	_NEGNQIIYKL_					0	0	0		ENST00000528758.1_1_11:7507087-7531416:+|nuORF;ENSG00000183801|ENST00000329293|OLFML1	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	ENST00000528758.1_1_11:7507087-7531416:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	596.3236083984375	2	596.322045	1190.62954	0.093735	5.5896E-05	-0.12651	-7.5442E-05	-0.032777	-1.9546E-05	596.3218047578983	91.173	1.0689	88.631	88.295	89.364	-2.5425					64	20	4	0	0	0	0.12738	3	7878	7870;7878;7891		106.68	38.821	1	780530			39363	8108	32484	32507	42719;42720;42721	42720					0.04184782189190628
NEGNRVIVP	9	Unmodified	_NEGNRVIVP_					0	0	0		tr|A0A7D6W103|A0A7D6W103_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01855PE=4SV=1	tr|A0A7D6W103|A0A7D6W103_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01855PE=4SV=1	tr|A0A7D6W103|A0A7D6W103_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01855PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.2889404296875	2	499.274898	996.535243	-0.052925	-2.6424E-05	-4.0911	-0.0020426	-4.144	-0.002069	499.2732829747169	79.965	1.0627	77.625	77.257	78.32	-2.3399					36	20	3	0	0	0	0.027402	1	4359	4359		39.253	0	1	51587			39364	35396	32485	32508	42722	42722					0.036836881577073655
NEGPRGNI	8	Unmodified	_NEGPRGNI_					0	0	0			REV__tr|A0A7D6VTJ9|A0A7D6VTJ9_9CLOTCarbohydrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02740PE=4SV=1	REV__tr|A0A7D6VTJ9|A0A7D6VTJ9_9CLOTCarbohydrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02740PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	428.7071838378906	2	428.717216	855.419879	-0.43604	-0.00018694	3.0324	0.0013001	2.5964	0.0011131	428.71814060487384	59.706	0.38409	59.706	59.573	59.957	0					12	9	2	0	0	0	0.028476	1	5179	5179		15.642	3.435	1	76794	+		39365	31608	32486	32509	42723	42723					-0.013614159732924236
NEGPVPVPI	9	Unmodified	_NEGPVPVPI_					0	0	0			REV__ENST00000306077.4_1_3:14166445-14170984:+|nuORF	REV__ENST00000306077.4_1_3:14166445-14170984:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	461.2611389160156	2	461.255643	920.496732	0.1912	8.8194E-05	0.20116	9.2787E-05	0.39237	0.00018098	461.2555718634956	62.45	0.41207	62.45	62.209	62.621	0					14	9	2	0	0	0	0.027343	1	5552	5552		40.778	0	1	750370	+		39366	24291	32487	32510	42724	42724					0.0333038252319966
NEGQSITLN	9	Unmodified	_NEGQSITLN_					0	0	0			REV__tr|A0A553SGN3|A0A553SGN3_NIACIPhosphoribosylformylglycinamidinesynthasesubunitPurLOS=NialliacirculansOX=1397GN=purLPE=3SV=1	REV__tr|A0A553SGN3|A0A553SGN3_NIACIPhosphoribosylformylglycinamidinesynthasesubunitPurLOS=NialliacirculansOX=1397GN=purLPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.28863525390625	2	488.240721	974.466889	0.01881	9.1836E-06	-2.3523	-0.0011485	-2.3335	-0.0011393	488.239362789515	48.27	1.4361	45.163	44.482	45.918	-3.1077					52	27	3	0	0	0	0.027462	1	2725	2725		30.318	4.7437	1	92650	+		39367	29724	32488	32511	42725	42725					-0.021366012127941758
NEGSDRDRTKI	11	Unmodified	_NEGSDRDRTKI_					0	0	0			REV__nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	REV__nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	MULTI-MSMS	OvCa9_classI_Rep4_	4	430.885498046875	3	430.88474	1289.63239	0.76301	0.00032877	2.2803	0.00098256	3.0433	0.0013113	430.8857606661418	22.115	1.8838	20.776	19.737	21.621	-1.3386					78	40	3	0	0	0	0.63942	1	243	243		41.08	2.3265	1	126830	+		39368	23510	32489	32512	42726	42726					-0.000839944239714896
NEGTEALAE	9	Unmodified	_NEGTEALAE_					0	0	0			REV__tr|A0A553SJZ5|A0A553SJZ5_NIACIsite-specificDNA-methyltransferase(adenine-specific)OS=NialliacirculansOX=1397GN=CEQ21_17720PE=4SV=1	REV__tr|A0A553SJZ5|A0A553SJZ5_NIACIsite-specificDNA-methyltransferase(adenine-specific)OS=NialliacirculansOX=1397GN=CEQ21_17720PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.23004150390625	2	467.211629	932.408705	-0.77492	-0.00036205	2.8527	0.0013328	2.0777	0.00097074	467.2135850755449	37.168	0.41636	37.168	37.069	37.485	0					11	8	2	0	0	0	0.027462	1	2008	2008		20.947	0	1	39311	+		39369	30060	32490	32513	42727	42727					-0.06020282858094106
NEGTLLHIFD	10	Unmodified	_NEGTLLHIFD_					0	0	0			REV__ENST00000414617.1_1_21:34853889-34854420:-|nuORF	REV__ENST00000414617.1_1_21:34853889-34854420:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	579.7927856445312	2	579.793121	1157.57169	0.93258	0.0005407	-4.4466	-0.0025781	-3.5141	-0.0020374	579.7906160912456	131	0.80748	131	130.63	131.43	0					25	16	2	0	0	0	0.55359	1	15191	15191		47.657	3.5405	1	114220	+		39370	25520	32491	32514	42728	42728					-0.0007947973624595761
NEGTVAVVI	9	Unmodified	_NEGTVAVVI_					0	0	0			REV__nc|ENSG00000214960|A4D126-2|CRPPA	REV__nc|ENSG00000214960|A4D126-2|CRPPA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.7703552246094	2	451.2531	900.491647	-0.46493	-0.0002098	1.1824	0.00053356	0.71747	0.00032376	451.2538102070616	95.631	1.2067	93.162	92.561	93.768	-2.4685					38	23	3	0	0	0	0.027426	1	8427	8427		47.657	12.039	1	30892	+		39371	23307	32492	32515	42729	42729					0.03742078660570769
NEGVALSDFL	10	Unmodified	_NEGVALSDFL_					0	0	0			REV__ENST00000383202.6_1_3:136117609-136117651:-|nuORF	REV__ENST00000383202.6_1_3:136117609-136117651:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	532.7631225585938	2	532.766571	1063.51859	-2.5391	-0.0013527	-4.0703	-0.0021685	-6.6094	-0.0035212	532.7645469241053	118.72	1.6329	118.57	117.94	119.57	-0.14755					101	32	5	0	0	0	0.5675	1	11405	11405		45.972	0	1	241770	+		39372	25218	32493	32516	42730	42730					-0.010628575189002731
NEHAKMPLK	9	Unmodified	_NEHAKMPLK_					0	0	0		ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2	ENSG00000198626|ENST00000366574|RYR2	ENSG00000198626|ENST00000366574|RYR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.8094482421875	2	534.286951	1066.55935	0.021428	1.1449E-05	1.6748	0.00089483	1.6962	0.00090628	534.2888472485042	30.986	0.19503	30.986	30.881	31.076	0					5	3	2	0	0	0	0.027017	1	1246	1246		93.195	28.988	1	14034			39373	8837	32494	32517	42731	42731					0.028732053197245477
NEHEPEHSKK	10	Unmodified	_NEHEPEHSKK_					0	0	0		ENSG00000168944|ENST00000306467|CEP120;nc|ENSG00000168944|Q8N960-2|CEP120	ENSG00000168944|ENST00000306467|CEP120	ENSG00000168944|ENST00000306467|CEP120	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.52880859375	3	412.198548	1233.57381	0.76641	0.00031591	-0.64648	-0.00026648	0.11993	4.9434E-05	412.19807251157357	35.638	0.41776	35.638	35.475	35.892	0					16	8	3	0	0	0	0.02678	1	1812	1812		29.551	7.7703	1	76153			39374	6961	32495	32518	42732	42732					-0.0336305099845049
NEHKALYQLV	10	Unmodified	_NEHKALYQLV_					0	0	0			REV__ENSG00000134107|ENST00000256495|BHLHE40	REV__ENSG00000134107|ENST00000256495|BHLHE40	MULTI-SECPEP	OvCa9_classI_Rep4_	4	606.8346557617188	2	607.830037	1213.64552	-1.9614	-0.0011922	0.28512	0.0001733	-1.6763	-0.0010189	608.3312734400254	88.352	0.80751	85.75	85.277	86.085	-2.6027					23	15	3	0	0	0	0.026849	1	7566	7566		25.574	0	1	56816	+		39375	19173	32496	32519	42733	42733					0.047244884260635445
NEHNLIAQF	9	Unmodified	_NEHNLIAQF_					0	0	0			REV__nc|ENSG00000170379|A6NFQ2-3|TCAF2	REV__nc|ENSG00000170379|A6NFQ2-3|TCAF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.3046264648438	2	543.272355	1084.53016	2.3126	0.0012563	-2.1432	-0.0011643	0.16937	9.2017E-05	543.2707593820679	121.81	0.1888	121.81	121.66	121.85	0					5	3	2	0	0	0	0.027462	1	14005	14005		47.657	9.8458	1	38984	+		39376	29001	32497	32520	42734	42734					-0.008726157049068206
NEIARAILL	9	Unmodified	_NEIARAILL_					0	0	0			REV__tr|A0A553SPI6|A0A553SPI6_NIACICarbon-nitrogenfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_26415PE=3SV=1	REV__tr|A0A553SPI6|A0A553SPI6_NIACICarbon-nitrogenfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_26415PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	506.811767578125	2	506.811116	1011.60768	-1.429	-0.00072423	-0.67013	-0.00033963	-2.0991	-0.0010639	506.8105511307101	103.7	1.3564	103.7	103.18	104.54	0					64	31	4	0	0	0	0.22621	1	11616	11616		71.877	3.0906	1	3048300	+		39377	30539	32498	32521	42735	42735					0.10234022231293238
NEIARAILL	9	Unmodified	_NEIARAILL_					0	0	0			REV__tr|A0A553SPI6|A0A553SPI6_NIACICarbon-nitrogenfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_26415PE=3SV=1	REV__tr|A0A553SPI6|A0A553SPI6_NIACICarbon-nitrogenfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_26415PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	506.81097412109375	2	506.811116	1011.60768	-1.285	-0.00065125	-0.29635	-0.00015019	-1.5813	-0.00080144	506.8109472666925	100.58	3.0909	98.975	98.659	101.75	-1.6053					152	59	4	0	0	0	0.22621	1	6814	6814		71.877	5.4482	1	2966100	+		39378	30539	32498	32521	42736	42736					0.10234022231293238
NEIEKKSSV	9	Unmodified	_NEIEKKSSV_					0	0	0			REV__tr|A0A553SPP0|A0A553SPP0_NIACIDiacetylreductase[(S)-acetoinforming]OS=NialliacirculansOX=1397GN=CEQ21_26685PE=3SV=1	REV__tr|A0A553SPP0|A0A553SPP0_NIACIDiacetylreductase[(S)-acetoinforming]OS=NialliacirculansOX=1397GN=CEQ21_26685PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	517.2840576171875	2	517.279846	1032.54514	1.4877	0.00076958	1.7036	0.00088125	3.1914	0.0016508	517.2807168885129	135.96	0.61179	135.96	135.78	136.39	0					26	12	3	0	0	0	0.42576	1	15867	15867		49.536	5.1589	1	130210	+		39379	30555	32499	32522	42737	42737					0.030168313724288964
NEIEKKSSV	9	Unmodified	_NEIEKKSSV_					0	0	0			REV__tr|A0A553SPP0|A0A553SPP0_NIACIDiacetylreductase[(S)-acetoinforming]OS=NialliacirculansOX=1397GN=CEQ21_26685PE=3SV=1	REV__tr|A0A553SPP0|A0A553SPP0_NIACIDiacetylreductase[(S)-acetoinforming]OS=NialliacirculansOX=1397GN=CEQ21_26685PE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	517.279846	1032.54514	1.4877	0.00076958	1.7036	0.00088125	3.1914	0.0016508	517.2807168885129	135.96	0.61179	135.96	135.78	136.39	0	0	0	NaN	49.536	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130210	+		39380	30555	32499	32522							0.030168313724288964
NEIFDQLRA	9	Unmodified	_NEIFDQLRA_					0	0	0			REV__ENST00000466727.1_1_10:64134143-64159545:+|nuORF	REV__ENST00000466727.1_1_10:64134143-64159545:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.285400390625	2	553.285463	1104.55637	0.99546	0.00055077	-1.2158	-0.0006727	-0.22038	-0.00012193	553.284772614335	110.27	1.3677	108.67	108.23	109.59	-1.6011					78	25	5	0	0	0	0.16264	1	10134	10134		82.75	0	1	1056000	+		39381	19527	32500	32523	42738	42738					0.008276534665810686
NEIFKHNY	8	Unmodified	_NEIFKHNY_					0	0	0			REV__nc|ENSG00000137672|Q9Y210-2|TRPC6	REV__nc|ENSG00000137672|Q9Y210-2|TRPC6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.7835083007812	2	532.761623	1063.50869	-2.2859	-0.0012178	-1.7495	-0.00093206	-4.0354	-0.0021499	532.760725147053	72.921	0.43507	69.525	69.301	69.736	-3.3961					17	8	3	0	0	0	0.028476	1	5650	5650		45.952	18.07	1	28699	+		39382	19467	32501	32524	42739	42739					-0.020520007336017443
NEIIVEIEI	9	Unmodified	_NEIIVEIEI_					0	0	0			REV__tr|A0A7D7A4H6|A0A7D7A4H6_9CLOTLysRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03160PE=3SV=1	REV__tr|A0A7D7A4H6|A0A7D7A4H6_9CLOTLysRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03160PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	536.3067016601562	2	536.300247	1070.58594	0.17096	9.1684E-05	4.199	0.0022519	4.3699	0.0023436	536.3023063408742	101.69	1.2577	100.16	99.74	101	-1.5211					47	23	3	0	0	0	0.16264	1	6956	6956		82.75	19.444	1	222060	+		39383	32608	32502	32525	42740	42740					0.05347172692040658
NEIKDSVVA	9	Unmodified	_NEIKDSVVA_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;GNB2-EEF2|1|fusion	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.7619934082031	2	487.761289	973.508025	0.23635	0.00011528	-0.92543	-0.00045139	-0.68907	-0.0003361	487.7609543280194	59.323	1.0374	55.931	55.553	56.591	-3.392					84	20	6	0	0	0	0.1149	1	3970	3970		93.143	13.431	1	1233600			39384	6826	32503	32526	42741	42741					0.020211598266769215
NEIKDSVVA	9	Unmodified	_NEIKDSVVA_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;GNB2-EEF2|1|fusion	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	487.761289	973.508025	-0.11206	-5.4659E-05	-0.28354	-0.0001383	-0.3956	-0.00019296	487.7612804601862	58.931	1.1792	56.151	55.588	56.767	-2.7801	0.10975	0.00037904	NaN	93.143	59	22	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198530			39385	6826	32503	32526							0.020211598266769215
NEINNHDLSL	10	Unmodified	_NEINNHDLSL_					0	0	0			REV__ENSG00000197147|ENST00000330947|LRRC8B	REV__ENSG00000197147|ENST00000330947|LRRC8B	MULTI-MSMS	OvCa9_classI_Rep2	2	584.7816162109375	2	584.783284	1167.55202	-1.6582	-0.0009697	-2.0774	-0.0012149	-3.7357	-0.0021846	584.7819856230432	85.183	2.3723	83.653	82.915	85.288	-1.5297					136	46	4	0	0	0	0.48398	1	7369	7369		56.434	6.8977	1	586800	+		39386	22897	32504	32527	42742	42742					-0.025058557469947118
NEIPRKAPV	9	Unmodified	_NEIPRKAPV_					0	0	0			REV__nc|ENSG00000174197|Q8IWI9-3|MGA	REV__nc|ENSG00000174197|Q8IWI9-3|MGA	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.94091796875	2	512.300916	1022.58728	-0.32255	-0.00016524	4.0477	0.0020736	3.7252	0.0019084	512.3027710879562	60.175	1.0408	60.175	59.647	60.688	0					32	25	2	0	0	0	0.027461	1	5282	5282		25.574	0	1	315610	+		39387	29011	32505	32528	42743	42743					0.07688851571469968
NEIPVEVVL	9	Unmodified	_NEIPVEVVL_					0	0	0		KDM4C-GMPS|1|fusion;KDM4C-GMPS|2|fusion;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS;ENST00000514075.2_1_4:8176279-8176723:+|nuORF	KDM4C-GMPS|1|fusion	KDM4C-GMPS|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	506.2905578613281	2	506.289682	1010.56481	1.8025	0.00091257	0.61945	0.00031362	2.4219	0.0012262	506.289904057486	135.99	1.2299	135.99	135.69	136.92	0					61	25	3	0	0	0	0.049969	2	15835	15835;15857		118.74	56.636	1	1510600			39388	14520	32506	32529	42744;42745	42744					0.059952073831937014
NEIPYPIKD	9	Unmodified	_NEIPYPIKD_					0	0	0		ENSG00000172901|ENST00000357872|LVRN;ENST00000504467.5_1_5:115348136-115357442:+|nuORF;ENST00000503203.5_1_5:115350153-115355748:+|nuORF;ENST00000515454.5_1_5:115350123-115359090:+|nuORF	ENSG00000172901|ENST00000357872|LVRN;ENST00000515454.5_1_5:115350123-115359090:+|nuORF	ENST00000515454.5_1_5:115350123-115359090:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	544.2987670898438	2	544.784764	1087.55498	0.51225	0.00027906	-3.161	-0.001722	-2.6487	-0.001443	544.7836889164291	91.935	1.0512	90.7	90.379	91.43	-1.2355					30	19	2	0	0	0	0.027432	1	8208	8208		77.318	5.4401	1	57923			39389	7328;13046	32507	32530	42746	42746					0.014700193778253379
NEIRLLQD	8	Unmodified	_NEIRLLQD_					0	0	0		ITPR3|p.I2624L|1|0.64|ENSG00000096433|chr6:33695008-33695008|A/C|missense_variant	ITPR3|p.I2624L|1|0.64|ENSG00000096433|chr6:33695008-33695008|A/C|missense_variant	ITPR3|p.I2624L|1|0.64|ENSG00000096433|chr6:33695008-33695008|A/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.31866455078125	2	500.774731	999.534909	-0.8207	-0.00041098	0.39111	0.00019586	-0.42958	-0.00021512	500.77469141184855	34.024	0.38475	34.024	33.776	34.161	0					10	7	2	0	0	0	0.028476	1	1578	1578		37.159	0	1	83290			39390	14511	32508	32531	42747	42747					0.03512268437862076
NEIRTLIDL	9	Unmodified	_NEIRTLIDL_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;nc|ENSG00000071794|Q14527-2|HLTF	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-MSMS	OvCa9_classI_Rep2	2	543.810302734375	2	543.811313	1085.60807	0.061836	3.3627E-05	-0.35552	-0.00019333	-0.29368	-0.00015971	543.8110823033019	113.47	1.4323	113.35	113.07	114.5	-0.11777					61	28	4	0	0	0	0.051592	1	10769	10769		117.81	29.634	1	171940			39391	1455	32509	32532	42748	42748					0.06869397160471635
NEISDDDSYV	10	Unmodified	_NEISDDDSYV_					0	0	0		nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;nc|ENSG00000070882|Q9H4L5-8|OSBPL3;nc|ENSG00000070882|Q9H4L5-7|OSBPL3	nc|ENSG00000070882|Q9H4L5-2|OSBPL3	nc|ENSG00000070882|Q9H4L5-2|OSBPL3	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.7950439453125	2	578.735665	1155.45678	-0.52553	-0.00030414	3.7042	0.0021438	3.1787	0.0018396	578.7378333466996	51.056	0.38379	51.056	50.907	51.291	0					13	8	2	0	0	0	0.026782	1	3941	3941		23.523	8.6578	1	207420			39392	1439	32510	32533	42749	42749					-0.11473253728718191
NEISDTINII	10	Unmodified	_NEISDTINII_					0	0	0			REV__tr|A0A7D6ZWX4|A0A7D6ZWX4_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20845PE=3SV=1	REV__tr|A0A7D6ZWX4|A0A7D6ZWX4_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20845PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	566.298828125	2	566.298236	1130.58192	-0.94412	-0.00053466	-0.19184	-0.00010864	-1.136	-0.00064329	566.2979066209101	99.965	2.3305	99.134	98.418	100.75	-0.83051					77	46	4	0	0	0	0.53807	1	9174	9174		49.536	0.094497	1	343040	+		39393	32304	32511	32534	42750	42750					0.021850831983556418
NEISEPIGCD	10	Unmodified	_NEISEPIGCD_					0	0	0			REV__ENST00000495061.5_1_12:7174408-7176017:+|nuORF	REV__ENST00000495061.5_1_12:7174408-7176017:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.8270874023438	2	538.731871	1075.44919	-0.40342	-0.00021734	-3.2389	-0.0017449	-3.6423	-0.0019622	538.7302963956571	93.295	0.4966	91.333	91.03	91.526	-1.9617					12	9	2	0	0	0	0.026551	1	5983	5983		42.864	0	1	9438.6	+		39394	22281	32512	32535	42751	42751					-0.08551684529970771
NEISIYDKL	9	Unmodified	_NEISIYDKL_					0	0	0		ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-2|C6orf89	ENSG00000198663|ENST00000480824|C6orf89	ENSG00000198663|ENST00000480824|C6orf89	MULTI-MSMS	OvCa99_classI_Rep5	1	547.7927856445312	2	547.790047	1093.56554	2.0959	0.0011481	1.9469	0.0010665	4.0427	0.0022146	547.7910155748689	95.139	0.83847	95.139	94.905	95.743	0					51	19	6	0	0	0	0.0090534	1	10372	10372		214.23	61.195	1	8698600			39395	8844	32513	32536	42752	42752					0.022500020322468117
NEISIYDKL	9	Unmodified	_NEISIYDKL_					0	0	0		ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-2|C6orf89	ENSG00000198663|ENST00000480824|C6orf89	ENSG00000198663|ENST00000480824|C6orf89	MULTI-MATCH	OvCa9_classI_Rep2	2		2	547.790047	1093.56554	0.1745	9.5587E-05	-0.66146	-0.00036234	-0.48697	-0.00026676	547.7895808355253	95.877	0.89539	94.849	94.516	95.411	-1.0281	-0.064897	-0.00091067	NaN	214.23	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104150			39396	8844	32513	32536							0.022500020322468117
NEISIYDKL	9	Unmodified	_NEISIYDKL_					0	0	0		ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-2|C6orf89	ENSG00000198663|ENST00000480824|C6orf89	ENSG00000198663|ENST00000480824|C6orf89	MULTI-MATCH	OvCa9_classI_Rep3	3		2	547.790047	1093.56554	-1.2784	-0.00070029	0.94161	0.0005158	-0.33678	-0.00018449	547.7905103643691	96.672	0.82515	94.843	94.571	95.396	-1.8286	-0.070198	0.00084562	NaN	214.23	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115090			39397	8844	32513	32536							0.022500020322468117
NEISIYDKL	9	Unmodified	_NEISIYDKL_					0	0	0		ENSG00000198663|ENST00000480824|C6orf89;nc|nan|Q6UWU4-2|C6orf89	ENSG00000198663|ENST00000480824|C6orf89	ENSG00000198663|ENST00000480824|C6orf89	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	547.790047	1093.56554	0.72432	0.00039677	-0.51935	-0.00028449	0.20497	0.00011228	547.7895312499022	97.232	0.90099	94.824	94.437	95.338	-2.408	-0.090074	-0.00075497	NaN	214.23	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129400			39398	8844	32513	32536							0.022500020322468117
NEISTNMYRD	10	Unmodified	_NEISTNMYRD_					0	0	0		tr|A0A7D6VU63|A0A7D6VU63_9CLOTHistidinol-phosphatetransaminaseOS=ClostridiumintestinaleOX=36845GN=hisCPE=3SV=1	tr|A0A7D6VU63|A0A7D6VU63_9CLOTHistidinol-phosphatetransaminaseOS=ClostridiumintestinaleOX=36845GN=hisCPE=3SV=1	tr|A0A7D6VU63|A0A7D6VU63_9CLOTHistidinol-phosphatetransaminaseOS=ClostridiumintestinaleOX=36845GN=hisCPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	621.7743530273438	2	621.774602	1241.53465	0.75642	0.00047032	-1.5289	-0.00095065	-0.77251	-0.00048033	621.7735556273027	132.61	0.80661	132.61	132.36	133.17	0					46	16	4	0	0	0	0.28422	1	15411	15411		82.75	2.2959	1	994180			39399	35168	32514	32537	42753	42753					-0.07645519344305285
NEIVHLPD	8	Unmodified	_NEIVHLPD_					0	0	0			REV__ENSG00000161800|ENST00000312377|RACGAP1	REV__ENSG00000161800|ENST00000312377|RACGAP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	468.7983703613281	2	468.742899	935.471246	0.11423	5.3544E-05	0.0085362	4.0013E-06	0.12277	5.7546E-05	468.7428959022628	90.952	0.71962	88.377	88.11	88.829	-2.575					20	13	2	0	0	0	0.028476	1	7869	7869		44.117	0	1	13784	+		39400	20708	32515	32538	42754	42754					0.0009290800077224048
NEIVWDFDGF	10	Unmodified	_NEIVWDFDGF_					0	0	0			REV__ENSG00000163344|ENST00000368467|PMVK	REV__ENSG00000163344|ENST00000368467|PMVK	MULTI-MSMS	OvCa99_classI_Rep5	1	621.2796630859375	2	621.277303	1240.54005	1.9324	0.0012005	3.2183	0.0019995	5.1507	0.0032	621.2792851737848	121.93	0.74091	121.93	121.66	122.4	0					40	15	4	0	0	0	0.39172	1	14036	14036		69.628	21.668	1	709470	+		39401	20828	32516	32539	42755	42755					-0.07059472490186636
NEIWTSPL	8	Unmodified	_NEIWTSPL_					0	0	0			REV__ENSG00000165731|ENST00000355710|RET	REV__ENSG00000165731|ENST00000355710|RET	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.8005676269531	2	480.245275	958.475997	-0.50614	-0.00024307	-3.5724	-0.0017156	-4.0785	-0.0019587	480.2434147336559	40.13	0.36924	40.13	39.971	40.34	0					11	7	2	0	0	0	0.028476	1	2405	2405		102.77	23.322	1	89860	+		39402	21112	32517	32540	42756	42756					-0.004902078564668955
NEKDLKKAK	9	Unmodified	_NEKDLKKAK_					0	0	0			REV__nc|ENSG00000125351|Q9BZI7-2|UPF3B	REV__nc|ENSG00000125351|Q9BZI7-2|UPF3B	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3428344726562	2	537.319306	1072.62406	-0.47925	-0.00025751	-0.25982	-0.00013961	-0.73907	-0.00039712	537.3193387959336	40.375	0.37238	40.375	40.106	40.479	0					12	7	3	0	0	0	0.027462	1	2422	2422		45.972	8.1607	1	105770	+		39403	18717	32518	32541	42757	42757					0.09065103397369967
NEKDTSILQ	9	Unmodified	_NEKDTSILQ_					0	0	0			REV__tr|A0A553SIF1|A0A553SIF1_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_14740PE=4SV=1	REV__tr|A0A553SIF1|A0A553SIF1_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_14740PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.8156127929688	2	524.269478	1046.5244	-0.68827	-0.00036084	3.5935	0.001884	2.9053	0.0015231	524.2712681514495	123.48	0.73999	122.11	122	122.74	-1.3666					18	14	2	0	0	0	0.027446	1	11703	11703		69.628	20.092	1	10233	+		39404	29887	32519	32542	42758	42758					0.0030024099276033667
NEKETMQSL	9	Unmodified	_NEKETMQSL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000520711.1_1_8:41368829-41369321:+|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENSG00000197079|ENST00000246639|KRT35;CON__Q92764;ENST00000585825.1_1_17:58887571-58888051:+|nuORF;CON__Q497I4;ENST00000577198.5_1_17:26603697-26633156:-|nuORF	ENSG00000111057|ENST00000388835|KRT18;ENST00000577198.5_1_17:26603697-26633156:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.2568969726562	2	540.255514	1078.49647	-0.54007	-0.00029177	0.40876	0.00022083	-0.13131	-7.0939E-05	540.2556287268995	56.848	2.2293	53.503	52.819	55.049	-3.3449					95	43	4	0	0	0	0.0076624	3	3658	3658;3668;3682		195.57	59.305	1	840430			39405	2808;13956	32520	32543	42759;42760;42761	42759					-0.03963405258969033
NEKETMQSL	9	Unmodified	_NEKETMQSL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000520711.1_1_8:41368829-41369321:+|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENSG00000197079|ENST00000246639|KRT35;CON__Q92764;ENST00000585825.1_1_17:58887571-58888051:+|nuORF;CON__Q497I4;ENST00000577198.5_1_17:26603697-26633156:-|nuORF	ENSG00000111057|ENST00000388835|KRT18;ENST00000577198.5_1_17:26603697-26633156:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	MULTI-MATCH	OvCa9_classI_Rep2	2		2	540.255514	1078.49647	-1.4413	-0.00077866	1.3289	0.00071795	-0.11238	-6.0715E-05	540.2560817395932	56.55	1.3875	53.746	53.324	54.712	-2.804	0.12132	0.00041569	NaN	195.57	55	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141540			39406	2808;13956	32520	32543							-0.03963405258969033
NEKGAEVEV	9	Unmodified	_NEKGAEVEV_					0	0	0			REV__nc|ENSG00000158158|Q6P4Q7-2|CNNM4	REV__nc|ENSG00000158158|Q6P4Q7-2|CNNM4	MULTI-MSMS	OvCa99_classI_Rep5	1	487.74517822265625	2	487.743096	973.47164	1.9477	0.00094996	0.42765	0.00020858	2.3753	0.0011585	487.7431642702237	76.604	0.5172	76.604	76.365	76.882	0					25	12	3	0	0	0	0.22621	1	7682	7682		71.877	4.3838	1	1259300	+		39407	20554	32521	32544	42762	42762					-0.016157170700353163
NEKGAEVEV	9	Unmodified	_NEKGAEVEV_					0	0	0			REV__nc|ENSG00000158158|Q6P4Q7-2|CNNM4	REV__nc|ENSG00000158158|Q6P4Q7-2|CNNM4	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	487.743096	973.47164	1.9477	0.00094996	0.42765	0.00020858	2.3753	0.0011585	487.7431642702237	76.604	0.5172	76.604	76.365	76.882	0	0	0	NaN	71.877	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1259300	+		39408	20554	32521	32544							-0.016157170700353163
NEKGAFWGLI	10	Unmodified	_NEKGAFWGLI_					0	0	0		nc|ENSG00000158865|Q8WWX8-6|SLC5A11;nc|ENSG00000158865|Q8WWX8-5|SLC5A11;nc|ENSG00000158865|Q8WWX8-3|SLC5A11;nc|ENSG00000158865|Q8WWX8-2|SLC5A11;ENSG00000158865|ENST00000424767|SLC5A11;nc|ENSG00000158865|Q8WWX8-4|SLC5A11	nc|ENSG00000158865|Q8WWX8-6|SLC5A11	nc|ENSG00000158865|Q8WWX8-6|SLC5A11	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.3499755859375	2	567.800749	1133.58694	-0.32228	-0.00018299	-0.85092	-0.00048315	-1.1732	-0.00066615	568.3009813515997	92.659	0.70833	90.152	89.704	90.412	-2.5072					16	13	2	0	0	0	0.02661	1	8050	8050		68.787	0	1	47461			39409	5978	32522	32545	42763	42763					0.02549431851616646
NEKGRSDPR	9	Unmodified	_NEKGRSDPR_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa9_classI_Rep2	2	530.3004150390625	2	529.770511	1057.52647	-1.1249	-0.00059596	1.2801	0.00067814	0.15512	8.218E-05	529.7704787381692	46.853	0.59504	44.143	43.943	44.538	-2.7097					20	11	3	0	0	0	0.027459	1	2829	2829		29.17	3.596	1	24938			39410	5793;36288	32523	32546	42764	42764					7.145212293835357E-06
NEKHLSVTF	9	Unmodified	_NEKHLSVTF_					0	0	0			REV__ENSG00000102595|ENST00000376747|UGGT2	REV__ENSG00000102595|ENST00000376747|UGGT2	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.2676391601562	2	537.782556	1073.55056	1.0659	0.00057323	0.56272	0.00030262	1.6286	0.00087585	537.7827557884854	155.84	2.5301	155.84	155.43	157.96	0					80	49	3	0	0	0	0.027462	1	18343	18343		37.159	19.691	1	71128	+		39411	17565	32524	32547	42765	42765					0.016725549548937124
NEKIAVVIL	9	Unmodified	_NEKIAVVIL_					0	0	0			REV__tr|A0A7D6VPV1|A0A7D6VPV1_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17850PE=4SV=1	REV__tr|A0A7D6VPV1|A0A7D6VPV1_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17850PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.786376953125	2	499.815867	997.617182	-0.69822	-0.00034898	2.4345	0.0012168	1.7363	0.00086781	499.8166299347752	53.476	0.73435	53.476	52.999	53.733	0					28	16	2	0	0	0	0.027462	1	4259	4259		31.955	17.818	1	176560	+		39412	31280	32525	32548	42766	42766					0.11827790516804271
NEKIKNLI	8	Unmodified	_NEKIKNLI_					0	0	0		ENSG00000057149|ENST00000283752|SERPINB3;nc|ENSG00000057149|P29508-2|SERPINB3	ENSG00000057149|ENST00000283752|SERPINB3	ENSG00000057149|ENST00000283752|SERPINB3	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.7584533691406	2	486.297842	970.581131	0.57513	0.00027968	1.1481	0.00055832	1.7232	0.000838	486.29828272663417	114.86	0.60464	114.86	114.6	115.21	0					21	12	2	0	0	0	0.028476	1	13149	13149		26.693	0	1	179550			39413	1233	32526	32549	42767	42767					0.09466333339935318
NEKIYFLIK	9	Unmodified	_NEKIYFLIK_					0	0	0		tr|A0A553SIP4|A0A553SIP4_NIACIYvbH-likeproteinOS=NialliacirculansOX=1397GN=CEQ21_15245PE=4SV=1	tr|A0A553SIP4|A0A553SIP4_NIACIYvbH-likeproteinOS=NialliacirculansOX=1397GN=CEQ21_15245PE=4SV=1	tr|A0A553SIP4|A0A553SIP4_NIACIYvbH-likeproteinOS=NialliacirculansOX=1397GN=CEQ21_15245PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	584.2651977539062	2	584.342249	1166.66995	-0.85174	-0.00049771	-3.6929	-0.0021579	-4.5446	-0.0026556	584.3403422399556	58.219	0.8	54.874	54.647	55.447	-3.3449					23	15	2	0	0	0	0.027462	1	3875	3875		15.642	0	1	122400			39414	33405	32527	32550	42768	42768					0.09327748579607942
NEKKDILK	8	Unmodified	_NEKKDILK_					0	0	0		ENST00000498078.1_1_13:41303510-41323454:-|nuORF;ENSG00000102738|ENST00000323563|MRPS31	ENST00000498078.1_1_13:41303510-41323454:-|nuORF	ENST00000498078.1_1_13:41303510-41323454:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.8016357421875	2	494.295299	986.576045	1.947	0.0009624	-0.94919	-0.00046918	0.99782	0.00049322	494.29515780481034	110.77	0.39858	110.77	110.58	110.98	0					12	8	2	0	0	0	0.028476	1	12602	12602		69.628	0	1	86462			39415	2250	32528	32551	42769	42769					0.08222029477326487
NEKLKNLEF	9	Unmodified	_NEKLKNLEF_					0	0	0			REV__ENSG00000171714|ENST00000324559|ANO5	REV__ENSG00000171714|ENST00000324559|ANO5	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.8133544921875	2	567.811313	1133.60807	0.21186	0.00012029	-0.45184	-0.00025656	-0.23998	-0.00013627	567.8110215969044	91.183	1.4761	88.64	88.346	89.822	-2.5425					76	28	4	0	0	0	0.14855	1	7886	7886		85.161	0	1	477570	+		39416	21639	32529	32552	42770	42770					0.04661397160452907
NEKNHLFQE	9	Unmodified	_NEKNHLFQE_					0	0	0			REV__AOC1|p.N657K|1|0.07|ENSG00000002726|chr7:150860615-150860615|C/G|missense_variant	REV__AOC1|p.N657K|1|0.07|ENSG00000002726|chr7:150860615-150860615|C/G|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	579.7803955078125	2	579.780544	1157.54654	-1.2007	-0.00069613	1.8851	0.0010929	0.68441	0.00039681	579.7816114712931	70.273	0.64045	70.273	69.962	70.603	0					37	15	3	0	0	0	0.51177	1	6746	6746		41.427	3.6151	1	1246100	+		39417	15642	32530	32553	42771	42771					-0.025935345388461428
NEKPEKGP	8	Unmodified	_NEKPEKGP_					0	0	0			REV__ENST00000447998.6_1_5:150089722-150089842:-|nuORF	REV__ENST00000447998.6_1_5:150089722-150089842:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	449.2751159667969	2	449.735074	897.455596	1.5013	0.00067518	1.3147	0.00059128	2.816	0.0012665	449.73527946033886	91.093	0.35732	91.093	90.816	91.174	0					10	8	2	0	0	0	0.028476	1	9767	9767		23.042	12.177	1	90488	+		39418	25926	32531	32554	42772	42772					0.0027662148371518924
NEKPFKKL	8	Unmodified	_NEKPFKKL_					0	0	0			REV__ENSG00000160007|ENST00000672722|ARHGAP35	REV__ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.75994873046875	2	502.300384	1002.58622	-0.59027	-0.00029649	-2.3531	-0.001182	-2.9434	-0.0014785	502.29900830550304	65.434	0.68107	65.434	65.15	65.831	0					28	16	2	0	0	0	0.028476	1	5994	5994		44.117	9.9443	1	836560	+		39419	20634	32532	32555	42773	42773					0.08502637202559526
NEKRSARPKSI	11	Unmodified	_NEKRSARPKSI_					0	0	0			REV__ENST00000260604.8_1_2:55870335-55906871:-|nuORF	REV__ENST00000260604.8_1_2:55870335-55906871:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	428.760009765625	3	429.249354	1284.72623	-0.62264	-0.00026727	2.4983	0.0010724	1.8757	0.00080514	429.25025281776715	93.946	0.62231	92.847	92.592	93.214	-1.0995					16	11	2	0	0	0	0.026033	1	8429	8429		12.433	2.3289	1	11875	+		39420	23930	32533	32556	42774	42774					0.09525769468996259
NEKSKVKGLL	10	Unmodified	_NEKSKVKGLL_					0	0	0			REV__ENST00000462978.1_1_1:155697409-155701908:+|nuORF	REV__ENST00000462978.1_1_1:155697409-155701908:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	557.8206787109375	2	558.342781	1114.67101	0.28751	0.00016053	1.6212	0.00090517	1.9087	0.0010657	558.846941514892	98.085	0.24164	97.192	97.12	97.361	-0.89305					6	4	2	0	0	0	0.026931	1	8916	8916		37.812	4.9991	1	5054.8	+		39421	26122	32534	32557	42775	42775					0.11825962948523738
NEKVIEHIM	9	Oxidation (M)	_NEKVIEHIM(Oxidation (M))_		NEKVIEHIM(1)		NEKVIEHIM(180)	0	0	1		ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	MULTI-MSMS	OvCa9_classI_Rep2	2	564.7888793945312	2	564.789524	1127.56449	-1.1107	-0.0006273	0.80575	0.00045508	-0.30493	-0.00017222	564.7898351264588	51.139	5.8531	48.345	47.63	53.483	-2.794					223	117	4	0	0	0	0.0078217	14	3334	3304;3310;3316;3321;3327;3334;3345;3351;3357;3364;3370;3377;3391;3397		180.93	37.542	1	1211300			39422	6279	32535	32558	42776;42777;42778;42779;42780;42781;42782;42783;42784;42785;42786;42787;42788;42789	42781		196			0.005814643916664863
NEKVIEHIM	9	Oxidation (M)	_NEKVIEHIM(Oxidation (M))_		NEKVIEHIM(1)		NEKVIEHIM(190)	0	0	1		ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.7890625	2	564.789524	1127.56449	0.57687	0.00032581	-1.4303	-0.0008078	-0.8534	-0.00048199	564.7887367335564	51.372	3.7906	48.198	47.62	51.41	-3.1734					221	74	4	0	0	0	0.0070314	11	3013	2978;2990;3001;3013;3025;3037;3049;3061;3074;3086;3099		185.55	94.773	1	5818900			39423	6279	32535	32558	42790;42791;42792;42793;42794;42795;42796;42797;42798;42799;42800	42793		196			0.005814643916664863
NEKVIEHIM	9	Unmodified	_NEKVIEHIM_					0	0	0		ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	MULTI-MSMS	OvCa9_classI_Rep2	2	556.791259765625	2	556.792066	1111.56958	-0.10428	-5.8063E-05	-0.49321	-0.00027462	-0.59749	-0.00033268	556.7917521752818	67.378	4.3564	64.717	64.347	68.704	-2.661					222	86	4	0	0	0	0.014622	18	5259	5245;5248;5253;5259;5265;5271;5277;5284;5290;5296;5302;5307;5314;5320;5326;5332;5339;5345		154.12	69.536	1	2406800			39424	6279	32535	32559	42801;42802;42803;42804;42805;42806;42807;42808;42809;42810;42811;42812;42813;42814;42815;42816;42817;42818	42804					0.018257682542753173
NEKVIEHIM	9	Unmodified	_NEKVIEHIM_					0	0	0		ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	MULTI-MSMS	OvCa9_classI_Rep4_	4	556.7935791015625	2	556.792066	1111.56958	1.0433	0.00058088	-1.6151	-0.00089927	-0.57183	-0.00031839	556.7911002915012	68.278	3.1173	64.788	64.526	67.643	-3.4902					185	63	5	0	0	0	0.018335	9	5053	5044;5053;5065;5078;5090;5102;5113;5127;5140		148.99	69.536	1	3611900			39425	6279	32535	32559	42819;42820;42821;42822;42823;42824;42825;42826;42827	42820					0.018257682542753173
NEKVISAKTK	10	Unmodified	_NEKVISAKTK_					0	0	0		tr|A0A553SRG4|A0A553SRG4_NIACIHADfamilyphosphataseOS=NialliacirculansOX=1397GN=CEQ21_01045PE=4SV=1	tr|A0A553SRG4|A0A553SRG4_NIACIHADfamilyphosphataseOS=NialliacirculansOX=1397GN=CEQ21_01045PE=4SV=1	tr|A0A553SRG4|A0A553SRG4_NIACIHADfamilyphosphataseOS=NialliacirculansOX=1397GN=CEQ21_01045PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	559.3363037109375	2	559.332413	1116.65027	0.059927	3.3519E-05	2.2701	0.0012697	2.33	0.0013032	559.3337743770333	105.67	2.6036	104.33	103.89	106.49	-1.3482					139	50	4	0	0	0	0.45953	1	7474	7474		59.931	3.2985	1	6929000			39426	34263	32536	32560	42828	42828					0.09661372568825755
NEKVISAKTK	10	Unmodified	_NEKVISAKTK_					0	0	0		tr|A0A553SRG4|A0A553SRG4_NIACIHADfamilyphosphataseOS=NialliacirculansOX=1397GN=CEQ21_01045PE=4SV=1	tr|A0A553SRG4|A0A553SRG4_NIACIHADfamilyphosphataseOS=NialliacirculansOX=1397GN=CEQ21_01045PE=4SV=1	tr|A0A553SRG4|A0A553SRG4_NIACIHADfamilyphosphataseOS=NialliacirculansOX=1397GN=CEQ21_01045PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.3344116210938	2	559.332413	1116.65027	0.1153	6.449E-05	2.4074	0.0013466	2.5227	0.001411	559.3338934185311	106.4	2.878	104.38	103.6	106.47	-2.0161					138	56	4	0	0	0	0.43433	1	9755	9755		63.534	1.4264	1	9929600			39427	34263	32536	32560	42829	42829					0.09661372568825755
NEKVLPSKIHT	11	Unmodified	_NEKVLPSKIHT_					0	0	0			REV__ENST00000497295.1_1_1:169660869-169660938:-|nuORF	REV__ENST00000497295.1_1_1:169660869-169660938:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	423.2593688964844	3	422.578588	1264.71394	0.39579	0.00016725	-0.11958	-5.0533E-05	0.27621	0.00011672	422.5784629342473	64.728	0.45242	64.728	64.503	64.955	0					18	10	2	0	0	0	0.026007	1	5928	5928		4.8861	0	1	615220	+		39428	26773	32537	32561	42830	42830					0.0921673300592829
NEKYYHELL	9	Unmodified	_NEKYYHELL_					0	0	0			REV__INTS4-CYP2R1|1|fusion	REV__INTS4-CYP2R1|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	604.798583984375	2	604.800946	1207.58734	-0.29786	-0.00018014	-2.6788	-0.0016201	-2.9766	-0.0018003	604.7992070165537	69.61	0.82242	69.61	69.347	70.17	0					47	19	4	0	0	0	0.40818	1	6656	6656		51.193	7.5419	1	3733900	+		39429	28310	32538	32562	42831	42831					-0.008151932192049571
NELAHPVLSF	10	Unmodified	_NELAHPVLSF_					0	0	0		ENSG00000104321|ENST00000262209|TRPA1	ENSG00000104321|ENST00000262209|TRPA1	ENSG00000104321|ENST00000262209|TRPA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.8155517578125	2	563.798206	1125.58186	0.86797	0.00048936	2.6078	0.0014702	3.4757	0.0019596	563.7993292662361	72.526	0.62392	72.526	72.291	72.915	0					42	15	4	0	0	0	0.026994	1	7054	7054		32.812	0.85756	1	1077500			39430	2365	32539	32563	42832	42832					0.024091279889717043
NELDADEFAP	10	Unmodified	_NELDADEFAP_					0	0	0		tr|A0A553SQ73|A0A553SQ73_NIACICwlT-likelysozymedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20975PE=4SV=1	tr|A0A553SQ73|A0A553SQ73_NIACICwlT-likelysozymedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20975PE=4SV=1	tr|A0A553SQ73|A0A553SQ73_NIACICwlT-likelysozymedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20975PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.761962890625	2	560.743293	1119.47203	1.1147	0.00062508	-0.8412	-0.0004717	0.27354	0.00015338	560.7430084503737	45.518	0.2103	45.518	45.413	45.624	0					6	4	2	0	0	0	0.026931	1	3164	3164		23.523	2.5758	1	73163			39431	34127	32540	32564	42833	42833					-0.08292342140862274
NELDMNLYM	9	Unmodified	_NELDMNLYM_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-MSMS	OvCa99_classI_Rep5	1	571.7479248046875	2	571.746467	1141.47838	1.1051	0.00063185	0.63934	0.00036554	1.7445	0.00099739	571.746755987732	109.45	1.2032	109.45	109.11	110.31	0					62	26	3	0	0	0	0.35444	1	12389	12389		56.721	1.9447	1	6373600			39432	1326	32541	32565	42834	42834					-0.08669863505338071
NELEELMSH	9	Unmodified	_NELEELMSH_					0	0	0			REV__nc|ENSG00000164221|Q8NEF3|CCDC112	REV__nc|ENSG00000164221|Q8NEF3|CCDC112	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3026123046875	2	551.247689	1100.48082	1.1106	0.00061224	1.3372	0.00073713	2.4478	0.0013494	551.2481280501075	115.18	0.55982	115.18	114.88	115.44	0					20	11	3	0	0	0	0.027462	1	13155	13155		35.618	0	1	78305	+		39433	20961	32542	32566	42835	42835					-0.06539691776038126
NELERQKK	8	Unmodified	_NELERQKK_					0	0	0		ENST00000530501.1_1_11:75672590-75694706:+|nuORF;ENST00000533454.5_2_11:75672590-75724017:+|nuORF;UVRAG-TMEM194A|1|fusion;ENSG00000198382|ENST00000356136|UVRAG	ENST00000530501.1_1_11:75672590-75694706:+|nuORF	ENST00000530501.1_1_11:75672590-75694706:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	522.7921142578125	2	522.793455	1043.57236	1.0271	0.00053695	-3.2762	-0.0017128	-2.2492	-0.0011758	522.7904169818897	147.63	0.72484	147.63	147.26	147.98	0					29	14	3	0	0	0	0.60899	1	17278	17278		62.107	7.3851	1	140500			39434	8813	32543	32567	42836	42836					0.05231359703475391
NELETESIIKL	11	Unmodified	_NELETESIIKL_					0	0	0		tr|A0A7D6ZSU6|A0A7D6ZSU6_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_17445PE=3SV=1	tr|A0A7D6ZSU6|A0A7D6ZSU6_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_17445PE=3SV=1	tr|A0A7D6ZSU6|A0A7D6ZSU6_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_17445PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	429.24505615234375	3	430.238009	1287.6922	-0.24802	-0.00010671	3.8187	0.0016429	3.5706	0.0015362	430.23988338722603	39.159	0.58363	39.159	38.836	39.42	0					27	12	3	0	0	0	0.025481	1	2306	2306		22.075	0.29506	1	41911			39435	35744	32544	32568	42837	42837					0.05985883466701125
NELIGQPIIHT	11	Unmodified	_NELIGQPIIHT_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	OvCa9_classI_Rep3	3	412.2315673828125	3	412.231189	1233.67174	1.934	0.00079726	-0.68164	-0.00028099	1.2524	0.00051626	412.2308161483838	65.879	3.828	62.933	62.452	66.28	-2.9459					181	75	4	0	0	0	0.7046	1	2811	2811		19.627	0	1	1016400	+		39436	22662	32545	32569	42838	42838					0.06424757597551434
NELIHNLEI	9	Unmodified	_NELIHNLEI_					0	0	0		tr|A0A7D7A4P6|A0A7D7A4P6_9CLOTTetR/AcrRfamilytranscriptionalregulatorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03985PE=4SV=1	tr|A0A7D7A4P6|A0A7D7A4P6_9CLOTTetR/AcrRfamilytranscriptionalregulatorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03985PE=4SV=1	tr|A0A7D7A4P6|A0A7D7A4P6_9CLOTTetR/AcrRfamilytranscriptionalregulatorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03985PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	547.7960815429688	2	547.795663	1093.57677	0.050847	2.7854E-05	-0.6998	-0.00038335	-0.64895	-0.00035549	547.7953012844869	106.44	1.5786	106.13	105.78	107.36	-0.30836					100	31	6	0	0	0	0.10421	2	9907	9907;9924		96.034	8.7546	1	280320			39437	36150	32546	32570	42839;42840	42839					0.03372824126358864
NELIHNLEI	9	Unmodified	_NELIHNLEI_					0	0	0		tr|A0A7D7A4P6|A0A7D7A4P6_9CLOTTetR/AcrRfamilytranscriptionalregulatorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03985PE=4SV=1	tr|A0A7D7A4P6|A0A7D7A4P6_9CLOTTetR/AcrRfamilytranscriptionalregulatorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03985PE=4SV=1	tr|A0A7D7A4P6|A0A7D7A4P6_9CLOTTetR/AcrRfamilytranscriptionalregulatorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03985PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	547.7957763671875	2	547.795663	1093.57677	-0.21256	-0.00011644	-0.59041	-0.00032342	-0.80297	-0.00043986	547.7952386347279	107.34	1.5843	106.08	105.81	107.39	-1.267					109	30	6	0	0	0	0.16264	1	7619	7619		82.75	4.4867	1	324320			39438	36150	32546	32570	42841	42841					0.03372824126358864
NELIHNLEI	9	Unmodified	_NELIHNLEI_					0	0	0		tr|A0A7D7A4P6|A0A7D7A4P6_9CLOTTetR/AcrRfamilytranscriptionalregulatorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03985PE=4SV=1	tr|A0A7D7A4P6|A0A7D7A4P6_9CLOTTetR/AcrRfamilytranscriptionalregulatorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03985PE=4SV=1	tr|A0A7D7A4P6|A0A7D7A4P6_9CLOTTetR/AcrRfamilytranscriptionalregulatorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03985PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.7965087890625	2	547.795663	1093.57677	-2.3765	-0.0013018	1.2696	0.00069549	-1.1068	-0.00060632	547.7963335506997	107.88	1.532	106	105.74	107.27	-1.8785					72	30	3	0	0	0	0.38807	1	9892	9892		53.089	0.15226	1	262780			39439	36150	32546	32570	42842	42842					0.03372824126358864
NELKEICEL	9	Unmodified	_NELKEICEL_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	OvCa99_classI_Rep5	1	545.7756958007812	2	545.776082	1089.53761	1.4063	0.00076751	-1.213	-0.00066205	0.19323	0.00010546	545.7750667759226	147.91	0.48462	147.91	147.69	148.18	0					22	9	3	0	0	0	0.38969	1	17302	17302		52.937	3.7259	1	95211			39440	3897	32547	32571	42843	42843					-0.003576442195026175
NELKIIPA	8	Unmodified	_NELKIIPA_					0	0	0			REV__tr|A0A7D6ZV05|A0A7D6ZV05_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01865PE=3SV=1	REV__tr|A0A7D6ZV05|A0A7D6ZV05_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01865PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	449.2749938964844	2	449.273835	896.533118	-0.25213	-0.00011328	0.07883	3.5416E-05	-0.1733	-7.7859E-05	449.2737182607347	93.211	1.2701	90.704	90.262	91.532	-2.5072					62	26	4	0	0	0	0.50674	1	8146	8146		76.847	2.8719	1	445970	+		39441	32234	32548	32572	42844	42844					0.08071259419909893
NELLIFPIL	9	Unmodified	_NELLIFPIL_					0	0	0		tr|A0A7D6VVV5|A0A7D6VVV5_9CLOTGlycosyltransferasefamily39proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01860PE=4SV=1	tr|A0A7D6VVV5|A0A7D6VVV5_9CLOTGlycosyltransferasefamily39proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01860PE=4SV=1	tr|A0A7D6VVV5|A0A7D6VVV5_9CLOTGlycosyltransferasefamily39proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01860PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.2929077148438	2	536.326068	1070.63758	-1.2376	-0.00066377	1.0625	0.00056985	-0.17512	-9.392E-05	536.3264526304108	77.285	0.729	74.469	74.096	74.825	-2.8165					26	14	2	0	0	0	0.027447	1	6176	6176		47.657	0	1	36427			39442	35237	32549	32573	42845	42845					0.10508961176606135
NELLKRLQE	9	Unmodified	_NELLKRLQE_					0	0	0		nc|nan|Q9H972-2|C14orf93;ENSG00000100802|ENST00000299088|C14orf93	nc|nan|Q9H972-2|C14orf93	nc|nan|Q9H972-2|C14orf93	MULTI-MSMS	OvCa9_classI_Rep4_	4	571.8310546875	2	571.830037	1141.64552	-0.08601	-4.9183E-05	-0.52163	-0.00029828	-0.60764	-0.00034747	571.8296552320246	61.77	1.2517	58.312	58.057	59.309	-3.4577					64	25	4	0	0	0	0.075618	1	4264	4264		104.01	2.761	1	564920			39443	2106	32550	32574	42846	42846					0.08036488426091637
NELLLSILNP	10	Unmodified	_NELLLSILNP_					0	0	0		ENSG00000160445|ENST00000291900|ZER1	ENSG00000160445|ENST00000291900|ZER1	ENSG00000160445|ENST00000291900|ZER1	MULTI-SECPEP	OvCa9_classI_Rep3	3	563.7933349609375	2	563.329339	1124.64412	-0.64744	-0.00036472	-2.8299	-0.0015942	-3.4773	-0.0019589	563.3288760936023	88.951	0.53134	86.82	86.413	86.944	-2.1309					18	10	3	0	0	0	0.027028	1	5418	5418		24.519	3.5723	1	15829			39444	6066	32551	32575	42847	42847					0.08678854337358644
NELLYSKK	8	Unmodified	_NELLYSKK_					0	0	0			REV__ENST00000564079.5_1_15:43678079-43678139:+|nuORF	REV__ENST00000564079.5_1_15:43678079-43678139:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.824951171875	2	497.782025	993.549496	0.21463	0.00010684	0.8476	0.00042192	1.0622	0.00052876	497.78186695214885	73.898	0.73494	73.898	73.4	74.135	0					25	18	2	0	0	0	0.028476	1	7302	7302		20.03	0	1	673990	+		39445	27663	32552	32576	42848	42848					0.052463405860066814
NELQTSLKL	9	Unmodified	_NELQTSLKL_					0	0	0			REV__tr|A0A553SPV2|A0A553SPV2_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_10795PE=3SV=1	REV__tr|A0A553SPV2|A0A553SPV2_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_10795PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8106689453125	2	523.298039	1044.58152	-0.24825	-0.00012991	-4.0538	-0.0021214	-4.3021	-0.0022513	523.2957269847138	45.058	0.91396	45.058	44.886	45.8	0					27	20	2	0	0	0	0.027403	1	3163	3163		60.118	0	1	179990	+		39446	30574	32553	32577	42849	42849					0.06101708269147821
NELQYVDQL	9	Unmodified	_NELQYVDQL_					0	0	0		ENST00000530657.1_1_11:85906626-85907241:+|nuORF;nc|ENSG00000168522|P49354-2|FNTA;ENSG00000168522|ENST00000302279|FNTA;ENST00000526755.5_1_8:42911676-42932640:+|nuORF	ENST00000530657.1_1_11:85906626-85907241:+|nuORF	ENST00000530657.1_1_11:85906626-85907241:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.2771606445312	2	561.277303	1120.54005	1.0019	0.00056236	1.6162	0.00090713	2.6181	0.0014695	561.2781800740087	102.82	1.6749	100.62	100.31	101.98	-2.1994					55	31	3	0	0	0	0.23241	1	9268	9268		70.816	1.9701	1	221870			39447	6917	32554	32578	42850	42850					-0.015394724901852896
NELRCFSML	9	Unmodified	_NELRCFSML_					0	0	0		ENST00000548731.1_1_12:56544665-56551697:-|nuORF	ENST00000548731.1_1_12:56544665-56551697:-|nuORF	ENST00000548731.1_1_12:56544665-56551697:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.2839965820312	2	556.764994	1111.51544	-0.99042	-0.00055143	2.1061	0.0011726	1.1156	0.00062115	556.7657401390967	70.04	0.40643	70.04	69.84	70.246	0					17	9	3	0	0	0	0.027462	1	6707	6707		31.53	0	1	708120			39448	13563	32555	32579	42851	42851					-0.03586147168903153
NELRRQME	8	Unmodified	_NELRRQME_					0	0	0			REV__ENST00000571023.1_1_17:4869560-4871044:-|nuORF	REV__ENST00000571023.1_1_17:4869560-4871044:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.3035888671875	2	538.26929	1074.52403	-1.1589	-0.00062382	3.8537	0.0020744	2.6948	0.0014505	538.2712217843227	91.379	0.61186	88.837	88.449	89.061	-2.5425					18	11	2	0	0	0	0.028476	1	7856	7856		32.812	11.127	1	33351	+		39449	27741	32556	32580	42852	42852					-0.010254572080839353
NELRYQREDM	10	Unmodified	_NELRYQREDM_					0	0	0		nc|ENSG00000102904|Q2TAA8|TSNAXIP1;ENSG00000102904|ENST00000561639|TSNAXIP1;ENST00000487120.5_1_16:67848301-67859829:+|nuORF;ENST00000466164.5_1_16:67840937-67859829:+|nuORF;ENST00000565339.5_1_16:67848301-67859829:+|nuORF	nc|ENSG00000102904|Q2TAA8|TSNAXIP1	nc|ENSG00000102904|Q2TAA8|TSNAXIP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.2857360839844	3	451.878709	1352.6143	0.62645	0.00028308	0.75753	0.00034231	1.384	0.00062539	451.87959111127316	47.264	0.51235	44.191	43.81	44.322	-3.0724					13	9	2	0	0	0	0.026942	1	2546	2546		32.751	10.189	1	7871.7			39450	2266	32557	32581	42853	42853					-0.04790452670340528
NELSPWLL	8	Unmodified	_NELSPWLL_					0	0	0			REV__MLT1G1_dup3380|chr20:15886047-15886566:-|2.572689385012668|0.102653670100635|4.65|401.0|34|2|anti-sense	REV__MLT1G1_dup3380|chr20:15886047-15886566:-|2.572689385012668|0.102653670100635|4.65|401.0|34|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.2652587890625	2	486.263468	970.512382	-0.18561	-9.0254E-05	3.3633	0.0016354	3.1777	0.0015452	486.26507775233597	69.053	1.2294	65.563	64.867	66.096	-3.4902					56	24	4	0	0	0	0.58851	1	5159	5159		66.429	0	1	260110	+		39451	28671	32558	32582	42854	42854					0.025946690402406603
NELSPWLL	8	Unmodified	_NELSPWLL_					0	0	0			REV__MLT1G1_dup3380|chr20:15886047-15886566:-|2.572689385012668|0.102653670100635|4.65|401.0|34|2|anti-sense	REV__MLT1G1_dup3380|chr20:15886047-15886566:-|2.572689385012668|0.102653670100635|4.65|401.0|34|2|anti-sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	486.263468	970.512382	-1.0383	-0.00050486	-0.79145	-0.00038485	-1.8297	-0.00088972	486.26554533942385	68.312	0.79037	65.691	65.327	66.118	-2.6203	0.064195	-0.003696	NaN	66.429	35	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74787	+		39452	28671	32558	32582							0.025946690402406603
NELSPWLL	8	Unmodified	_NELSPWLL_					0	0	0			REV__MLT1G1_dup3380|chr20:15886047-15886566:-|2.572689385012668|0.102653670100635|4.65|401.0|34|2|anti-sense	REV__MLT1G1_dup3380|chr20:15886047-15886566:-|2.572689385012668|0.102653670100635|4.65|401.0|34|2|anti-sense	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	486.263468	970.512382	-0.18561	-9.0254E-05	3.3633	0.0016354	3.1777	0.0015452	486.26507775233597	69.053	1.2294	65.563	64.867	66.096	-3.4902	-0.064195	0.00034464	NaN	66.429	56	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260110	+		39453	28671	32558	32582							0.025946690402406603
NELSRIVL	8	Unmodified	_NELSRIVL_					0	0	0		nc|ENSG00000103264|Q5XUX0-2|FBXO31;ENSG00000103264|ENST00000311635|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.2829284667969	2	472.282192	942.549831	0.78754	0.00037194	-1.8239	-0.00086138	-1.0363	-0.00048944	472.2812786337472	78.198	2.098	75.381	74.681	76.779	-2.8165					93	43	4	0	0	0	0.19367	1	6279	6279		125.81	3.638	1	1273400			39454	2301	32559	32583	42855	42855					0.0762576030585933
NELSRIVL	8	Unmodified	_NELSRIVL_					0	0	0		nc|ENSG00000103264|Q5XUX0-2|FBXO31;ENSG00000103264|ENST00000311635|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	MULTI-MATCH	OvCa9_classI_Rep2	2		2	472.282192	942.549831	-0.49196	-0.00023235	-0.70054	-0.00033085	-1.1925	-0.0005632	472.28154313044377	77.228	3.6318	75.438	74.793	78.424	-1.7894	0.028343	0.00066037	NaN	125.81	119	70	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	471970			39455	2301	32559	32583							0.0762576030585933
NELSVIKIT	9	Unmodified	_NELSVIKIT_					0	0	0		tr|A0A7D6VQC7|A0A7D6VQC7_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20460PE=4SV=1	tr|A0A7D6VQC7|A0A7D6VQC7_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20460PE=4SV=1	tr|A0A7D6VQC7|A0A7D6VQC7_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20460PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.29473876953125	2	508.802957	1015.59136	1.2658	0.00064402	-0.064086	-3.2607E-05	1.2017	0.00061141	508.8027992716427	105.76	0.30796	105.76	105.66	105.97	0					14	6	3	0	0	0	0.027446	1	11888	11888		51.193	1.6567	1	377130			39456	34840	32560	32584	42856	42856					0.08418896274520193
NELSVIKIT	9	Unmodified	_NELSVIKIT_					0	0	0		tr|A0A7D6VQC7|A0A7D6VQC7_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20460PE=4SV=1	tr|A0A7D6VQC7|A0A7D6VQC7_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20460PE=4SV=1	tr|A0A7D6VQC7|A0A7D6VQC7_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20460PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	508.802957	1015.59136	-0.37462	-0.00019061	0.048624	2.474E-05	-0.326	-0.00016587	508.80291521512225	106.24	0.79829	105.8	105.4	106.2	-0.43642	-0.0099619	-0.00024607	NaN	51.193	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39231			39457	34840	32560	32584							0.08418896274520193
NELSVIKIT	9	Unmodified	_NELSVIKIT_					0	0	0		tr|A0A7D6VQC7|A0A7D6VQC7_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20460PE=4SV=1	tr|A0A7D6VQC7|A0A7D6VQC7_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20460PE=4SV=1	tr|A0A7D6VQC7|A0A7D6VQC7_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20460PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	508.802957	1015.59136	0.071398	3.6327E-05	-0.39432	-0.00020063	-0.32292	-0.0001643	508.80267075175493	107.17	0.53151	105.9	105.67	106.2	-1.267	0.085355	-0.00069681	NaN	51.193	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64335			39458	34840	32560	32584							0.08418896274520193
NELSVIKIT	9	Unmodified	_NELSVIKIT_					0	0	0		tr|A0A7D6VQC7|A0A7D6VQC7_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20460PE=4SV=1	tr|A0A7D6VQC7|A0A7D6VQC7_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20460PE=4SV=1	tr|A0A7D6VQC7|A0A7D6VQC7_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20460PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	508.802957	1015.59136	-2.2509	-0.0011452	2.7313	0.0013897	0.48044	0.00024445	508.80419009020795	107.67	0.57466	105.79	105.59	106.16	-1.8785	-0.020697	0.0024838	NaN	51.193	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48138			39459	34840	32560	32584							0.08418896274520193
NELTWNPFLI	10	Unmodified	_NELTWNPFLI_					0	0	0			REV__ENST00000400532.5_1_21:27071180-27074578:+|nuORF	REV__ENST00000400532.5_1_21:27071180-27074578:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	623.8265380859375	2	623.826963	1245.63937	1.5789	0.00098498	-3.017	-0.0018821	-1.4381	-0.0008971	623.8249987807814	112.55	0.62959	112.55	112.3	112.92	0					41	13	5	0	0	0	0.53807	1	12804	12804		49.536	0.93449	1	1120200	+		39460	25402	32561	32585	42857	42857					0.026379701945870693
NELVAPPAVEK	11	Unmodified	_NELVAPPAVEK_					0	0	0			REV__ENSG00000096968|ENST00000381652|JAK2	REV__ENSG00000096968|ENST00000381652|JAK2	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8233032226562	2	583.824421	1165.63429	-1.0594	-0.00061849	0.95126	0.00055537	-0.10811	-6.3117E-05	583.8248978197831	107.73	1.1962	106.5	106.18	107.38	-1.234					69	22	4	0	0	0	0.34475	1	7669	7669		65.157	6.9273	1	399180	+		39461	17310	32562	32586	42858	42858					0.05809666331947483
NELVAVVLPM	10	Unmodified	_NELVAVVLPM_					0	0	0			REV__nc|ENSG00000008294|O60271-5|SPAG9	REV__nc|ENSG00000008294|O60271-5|SPAG9	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.6239624023438	2	542.807185	1083.59982	-0.76497	-0.00041523	-1.9621	-0.001065	-2.7271	-0.0014803	542.8060102926701	70.279	0.67618	70.279	70.046	70.722	0					29	16	2	0	0	0	0.026994	1	6712	6712		32.812	19.853	1	2007400	+		39462	16450	32563	32587	42859	42859					0.06136126919477647
NELVKHEENG	10	Unmodified	_NELVKHEENG_					0	0	0		ENST00000482043.1_1_7:6968215-6970400:+|nuORF	ENST00000482043.1_1_7:6968215-6970400:+|nuORF	ENST00000482043.1_1_7:6968215-6970400:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.7819213867188	2	584.783284	1167.55202	0.68351	0.0003997	-4.0981	-0.0023965	-3.4146	-0.0019968	584.7808295654604	86.098	0.65014	83.451	82.993	83.643	-2.6463					40	12	4	0	0	0	0.47142	1	7285	7285		58.23	1.5089	1	1117400			39463	12563	32564	32588	42860	42860					-0.025058557469947118
NELWNPGQI	9	Unmodified	_NELWNPGQI_					0	0	0			REV__tr|A0A553SF59|A0A553SF59_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08270PE=3SV=1	REV__tr|A0A553SF59|A0A553SF59_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08270PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2985229492188	2	535.766906	1069.51926	1.1526	0.00061752	2.2982	0.0012313	3.4508	0.0018488	535.7678051642445	91.094	0.39471	91.094	90.938	91.332	0					14	9	2	0	0	0	0.027462	1	9781	9781		38.806	0	1	236410	+		39464	29537	32565	32589	42861	42861					-0.012720180792030078
NELYEISDKI	10	Unmodified	_NELYEISDKI_					0	0	0			REV__tr|A0A7D7A1V4|A0A7D7A1V4_9CLOTATPphosphoribosyltransferaseregulatorysubunitOS=ClostridiumintestinaleOX=36845GN=hisZPE=3SV=1	REV__tr|A0A7D7A1V4|A0A7D7A1V4_9CLOTATPphosphoribosyltransferaseregulatorysubunitOS=ClostridiumintestinaleOX=36845GN=hisZPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	408.5455017089844	3	408.543321	1222.60813	0.75285	0.00030757	3.4183	0.0013965	4.1711	0.0017041	408.54459041800135	52.232	0.78923	52.232	51.995	52.784	0					39	17	3	0	0	0	0.48398	1	4085	4085		56.434	5.2411	1	1375600	+		39465	32510	32566	32590	42862	42862					0.005733523697927012
NEMCELDPG	9	Unmodified	_NEMCELDPG_					0	0	0		ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.2627868652344	2	504.194067	1006.37358	0.44071	0.0002222	1.9757	0.00099611	2.4164	0.0012183	504.19504491855747	72.555	0.27155	72.555	72.374	72.645	0					9	6	2	0	0	0	0.027462	1	7072	7072		30.504	14.867	1	95226			39466	3275	32567	32591	42863	42863					-0.1293498498189365
NEMEDIVQE	9	Unmodified	_NEMEDIVQE_					0	0	0		nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38	nc|ENSG00000145868|Q6PIJ6-3|FBXO38	nc|ENSG00000145868|Q6PIJ6-3|FBXO38	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.3046875	2	553.737154	1105.45975	-0.34611	-0.00019165	2.9433	0.0016298	2.5972	0.0014381	553.7375021248066	51.612	0.53568	51.612	51.418	51.953	0					34	12	4	0	0	0	0.027452	1	3968	3968		41.427	0	1	495650			39467	5250	32568	32592	42864	42864					-0.08875701875535924
NEMHTKLNL	9	Unmodified	_NEMHTKLNL_					0	0	0			REV__ENST00000435913.1_1:143194333-143196710:-|nuORF	REV__ENST00000435913.1_1:143194333-143196710:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	549.8289794921875	2	550.281866	1098.54918	0.78064	0.00042957	-4.0125	-0.002208	-3.2319	-0.0017785	550.7784091393631	82.761	0.36273	81.162	80.958	81.321	-1.5988					8	6	2	0	0	0	0.027411	1	7044	7044		64.207	3.2353	1	20121	+		39468	25392	32569	32593	42865	42865					0.0038459759448414843
NEMQKFKEIQ	10	Unmodified	_NEMQKFKEIQ_					0	0	0		nc|ENSG00000168398|P30411-2|BDKRB2;ENSG00000168398|ENST00000554311|BDKRB2	nc|ENSG00000168398|P30411-2|BDKRB2	nc|ENSG00000168398|P30411-2|BDKRB2	MULTI-MSMS	OvCa9_classI_Rep4_	4	432.2234802246094	3	432.220184	1293.63872	0.80495	0.00034791	3.5518	0.0015352	4.3568	0.0018831	432.2216930877392	63.939	2.4217	60.464	60.109	62.531	-3.475					134	49	5	0	0	0	0.3295	1	4538	4538		77.288	1.6355	1	2524200			39469	6903	32570	32594	42866	42866					0.0036480748321991996
NEMTDPSVPE	10	Unmodified	_NEMTDPSVPE_					0	0	0			REV__nc|ENSG00000089101|Q8NHU2-3|CFAP61	REV__nc|ENSG00000089101|Q8NHU2-3|CFAP61	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.844482421875	2	559.737154	1117.45975	-0.24568	-0.00013752	-0.058538	-3.2766E-05	-0.30422	-0.00017029	559.7366527367224	50.508	0.48376	50.508	50.156	50.64	0					14	10	2	0	0	0	0.026968	1	3796	3796		36.447	19.974	1	61714	+		39470	15782	32571	32595	42867	42867					-0.09427701875529237
NENAYSPLIL	10	Unmodified	_NENAYSPLIL_					0	0	0		tr|A0A553STT3|A0A553STT3_NIACIPTSglucosetransportersubunitIIAOS=NialliacirculansOX=1397GN=CEQ21_05665PE=4SV=1	tr|A0A553STT3|A0A553STT3_NIACIPTSglucosetransportersubunitIIAOS=NialliacirculansOX=1397GN=CEQ21_05665PE=4SV=1	tr|A0A553STT3|A0A553STT3_NIACIPTSglucosetransportersubunitIIAOS=NialliacirculansOX=1397GN=CEQ21_05665PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.2973022460938	2	567.295496	1132.57644	0.96103	0.00054519	2.4931	0.0014143	3.4541	0.0019595	567.2967185608663	128.69	1.2374	128.46	128.13	129.37	-0.22696					75	24	5	0	0	0	0.63752	1	12641	12641		37.508	1.8899	1	313380			39471	34530	32572	32596	42868	42868					0.015454044065336348
NENMRRIQ	8	Oxidation (M)	_NENM(Oxidation (M))RRIQ_		NENM(1)RRIQ		NENM(80)RRIQ	0	0	1			REV__nc|ENSG00000126545|P47710-4|CSN1S1	REV__nc|ENSG00000126545|P47710-4|CSN1S1	MULTI-MSMS	OvCa99_classI_Rep5	1	538.7706298828125	2	538.766914	1075.51928	0.48004	0.00025863	2.8585	0.0015401	3.3385	0.0017987	538.7683937070504	72.463	1.0297	72.463	72.125	73.155	0					63	25	4	0	0	0	0.47824	1	7082	7082		79.713	8.4169	1	10653000	+		39472	18787	32573	32597	42869	42869		433			-0.015463413508541635
NENPGDFPNY	10	Unmodified	_NENPGDFPNY_					0	0	0			REV__nc|ENSG00000060709|O15034-2|RIMBP2	REV__nc|ENSG00000060709|O15034-2|RIMBP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.3306274414062	2	583.741085	1165.46762	0.24926	0.0001455	-3.8273	-0.0022342	-3.5781	-0.0020887	583.7385778598511	114.3	0.36183	114.3	114.11	114.47	0					10	7	2	0	0	0	0.02676	1	13037	13037		49.536	19.218	1	73589	+		39473	16740	32574	32598	42870	42870					-0.10849806563760467
NENRQVKALK	10	Unmodified	_NENRQVKALK_					0	0	0		tr|A0A7D6VSK1|A0A7D6VSK1_9CLOTRecombinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13210PE=4SV=1	tr|A0A7D6VSK1|A0A7D6VSK1_9CLOTRecombinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13210PE=4SV=1	tr|A0A7D6VSK1|A0A7D6VSK1_9CLOTRecombinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13210PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	401.2119445800781	3	400.566683	1198.67822	1.9634	0.00078648	2.6698	0.0010694	4.6332	0.0018559	400.5675667612221	20.883	0.38568	19.544	19.209	19.595	-1.3386					9	7	2	0	0	0	0.027035	1	65	65		23.378	9.2919	1	17770			39474	35032	32575	32599	42871	42871					0.0868269554894141
NENSALIQT	9	Unmodified	_NENSALIQT_					0	0	0			REV__tr|A0A7D6VWD4|A0A7D6VWD4_9CLOTHEATrepeatdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07970PE=4SV=1	REV__tr|A0A7D6VWD4|A0A7D6VWD4_9CLOTHEATrepeatdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07970PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.79510498046875	2	495.248546	988.482539	0.38261	0.00018949	0.61957	0.00030684	1.0022	0.00049633	495.24902487591885	59.931	0.68811	56.501	56.259	56.947	-3.43					15	13	2	0	0	0	0.027462	1	4013	4013		31.53	0	1	19767	+		39475	31745	32576	32600	42872	42872					-0.012163146957732351
NENSLFKSL	9	Unmodified	_NENSLFKSL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa9_classI_Rep2	2	526.2738037109375	2	526.274564	1050.53457	-0.43265	-0.00022769	-0.02888	-1.5199E-05	-0.46153	-0.00024289	526.2744724994641	93.851	1.9168	92.752	92.329	94.246	-1.0995					125	37	5	0	0	0	0.00063234	6	8385	8381;8385;8391;8399;8406;8413		237.92	23.694	1	1477500			39476	4906	32577	32601	42873;42874;42875;42876;42877;42878	42874					0.011328487180207958
NENSLFKSL	9	Unmodified	_NENSLFKSL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa9_classI_Rep3	3	526.27490234375	2	526.274564	1050.53457	-1.1863	-0.00062432	0.79995	0.00042099	-0.38634	-0.00020332	526.2749098568182	94.528	2.2988	92.633	92.307	94.605	-1.8956					152	45	5	0	0	0	0.0073128	6	6101	6101;6107;6114;6126;6134;6140		218.73	23.492	1	2121400			39477	4906	32577	32601	42879;42880;42881;42882;42883;42884	42879					0.011328487180207958
NENSLFKSL	9	Unmodified	_NENSLFKSL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.2756958007812	2	526.274564	1050.53457	-1.6256	-0.00085549	1.0984	0.00057805	-0.52717	-0.00027743	526.2750580598648	95.205	2.0667	92.736	92.31	94.377	-2.4685					130	40	5	0	0	0	1.1688E-06	4	8372	8350;8372;8386;8400		253.05	23.72	1	1998000			39478	4906	32577	32601	42885;42886;42887;42888	42886					0.011328487180207958
NENSNIQVL	9	Unmodified	_NENSNIQVL_					0	0	0		ENST00000513975.5_1_4:54244032-54306933:+|nuORF;ENST00000513008.5_1_4:54292015-54325613:+|nuORF;nc|ENSG00000145216|Q6UN15-4|FIP1L1;nc|ENSG00000145216|Q6UN15-3|FIP1L1;ENST00000505125.5_1_4:54245288-54325613:+|nuORF;nc|ENSG00000145216|Q6UN15-5|FIP1L1;ENSG00000145216|ENST00000337488|FIP1L1	ENST00000513975.5_1_4:54244032-54306933:+|nuORF	ENST00000513975.5_1_4:54244032-54306933:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7626342773438	2	515.76182	1029.50909	-0.37826	-0.00019509	0.021478	1.1078E-05	-0.35678	-0.00018402	515.7617010027612	90.825	0.97334	88.25	87.956	88.929	-2.575					42	18	3	0	0	0	0.21231	1	7840	7840		74.255	10.048	1	167050			39479	13023	32578	32602	42889	42889					-0.00448625804438052
NENSNIQVL	9	Unmodified	_NENSNIQVL_					0	0	0		ENST00000513975.5_1_4:54244032-54306933:+|nuORF;ENST00000513008.5_1_4:54292015-54325613:+|nuORF;nc|ENSG00000145216|Q6UN15-4|FIP1L1;nc|ENSG00000145216|Q6UN15-3|FIP1L1;ENST00000505125.5_1_4:54245288-54325613:+|nuORF;nc|ENSG00000145216|Q6UN15-5|FIP1L1;ENSG00000145216|ENST00000337488|FIP1L1	ENST00000513975.5_1_4:54244032-54306933:+|nuORF	ENST00000513975.5_1_4:54244032-54306933:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	515.76182	1029.50909	3.3272	0.0017161	6.1858	0.0031904	9.5131	0.0049065	516.2664712656554	88.091	0.38011	88.091	87.962	88.342	0	0.0025475	0.0058748	NaN	74.255	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220040			39480	13023	32578	32602							-0.00448625804438052
NENSNIQVL	9	Unmodified	_NENSNIQVL_					0	0	0		ENST00000513975.5_1_4:54244032-54306933:+|nuORF;ENST00000513008.5_1_4:54292015-54325613:+|nuORF;nc|ENSG00000145216|Q6UN15-4|FIP1L1;nc|ENSG00000145216|Q6UN15-3|FIP1L1;ENST00000505125.5_1_4:54245288-54325613:+|nuORF;nc|ENSG00000145216|Q6UN15-5|FIP1L1;ENSG00000145216|ENST00000337488|FIP1L1	ENST00000513975.5_1_4:54244032-54306933:+|nuORF	ENST00000513975.5_1_4:54244032-54306933:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	515.76182	1029.50909	0.0020489	1.0567E-06	0.49815	0.00025693	0.5002	0.00025798	515.7617480033325	90.004	1.4331	87.923	87.49	88.923	-2.0805	-0.16462	7.7896E-06	NaN	74.255	66	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201520			39481	13023	32578	32602							-0.00448625804438052
NEPKEIVE	8	Unmodified	_NEPKEIVE_					0	0	0			REV__ENSG00000071051|ENST00000233154|NCK2	REV__ENSG00000071051|ENST00000233154|NCK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.7935791015625	2	479.248015	956.481476	0.68859	0.00033	0.94623	0.00045348	1.6348	0.00078348	479.2485118933268	81.228	0.78822	81.228	80.744	81.532	0					26	18	2	0	0	0	0.028476	1	8293	8293		27.882	6.9353	1	814000	+		39482	16896	32579	32603	42890	42890					0.001494709353323742
NEPKRKLPV	9	Unmodified	_NEPKRKLPV_					0	0	0		nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MULTI-MSMS	OvCa9_classI_Rep3	3	540.8313598632812	2	540.82984	1079.64513	2.013	0.0010887	0.75549	0.00040859	2.7684	0.0014973	540.8302826822948	124.41	3.5435	123.37	123.03	126.57	-1.0377					194	67	5	0	0	0	0.31747	1	9689	9689		60.972	11.53	1	8697600			39483	2607	32580	32604	42891	42891					0.10849113496897189
NEPKVLEDM	9	Unmodified	_NEPKVLEDM_					0	0	0			REV__nc|ENSG00000005189|Q96IC2-2|REXO5	REV__nc|ENSG00000005189|Q96IC2-2|REXO5	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.813720703125	2	537.760432	1073.50631	-0.44572	-0.00023969	-2.0492	-0.001102	-2.4949	-0.0013416	537.7591674738323	59.043	0.22723	59.043	58.892	59.12	0					9	5	2	0	0	0	0.027462	1	5041	5041		27.882	16.371	1	217720	+		39484	16395	32581	32605	42892	42892					-0.027502172536060243
NEPPIQDPN	9	Unmodified	_NEPPIQDPN_					0	0	0			REV__AHR|p.S522Yfs*21|1|0.06|ENSG00000106546|chr7:17339390-17339390|C/-|frameshift_variant	REV__AHR|p.S522Yfs*21|1|0.06|ENSG00000106546|chr7:17339390-17339390|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.3160400390625	2	512.240721	1022.46689	2.4102	0.0012346	-0.15274	-7.8239E-05	2.2574	0.0011563	512.2406728141738	80.543	0.43036	80.543	80.314	80.744	0					16	9	2	0	0	0	0.027462	1	8287	8287		13.454	0	1	162940	+		39485	15582	32582	32606	42893	42893					-0.04344601212812904
NEPPLNLVR	9	Unmodified	_NEPPLNLVR_					0	0	0			REV__ENSG00000146282|ENST00000369536|RARS2	REV__ENSG00000146282|ENST00000369536|RARS2	MULTI-SECPEP	OvCa9_classI_Rep3	3	527.2821044921875	2	526.298373	1050.58219	-1.3635	-0.0007176	-1.6318	-0.00085882	-2.9953	-0.0015764	526.2977170290515	76.606	1.4027	74.234	73.417	74.819	-2.3715					53	26	3	0	0	0	0.027462	1	3969	3969		27.882	0	1	108300	+		39486	20006	32583	32607	42894	42894					0.058925477088678235
NEPPVDFVI	9	Unmodified	_NEPPVDFVI_					0	0	0			REV__ENSG00000170743|ENST00000318881|SYT9	REV__ENSG00000170743|ENST00000318881|SYT9	MULTI-MSMS	OvCa99_classI_Rep5	1	515.2678833007812	2	515.266207	1028.51786	1.5159	0.00078108	1.668	0.00085947	3.1839	0.0016405	515.2669159352542	133.46	1.0215	133.46	133.08	134.1	0					44	18	4	0	0	0	0.69123	1	15504	15504		20.947	1.587	1	817710	+		39487	21559	32584	32608	42895	42895					0.004743478320506256
NEPPVMCSHF	10	Unmodified	_NEPPVMCSHF_					0	0	0		ENSG00000197372|ENST00000359788|ZNF675	ENSG00000197372|ENST00000359788|ZNF675	ENSG00000197372|ENST00000359788|ZNF675	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.83251953125	2	580.746802	1159.47905	-1.0866	-0.00063106	-2.4644	-0.0014312	-3.551	-0.0020622	580.7452860271504	36.314	0.36845	36.314	36.119	36.487	0					11	7	2	0	0	0	0.027118	1	1918	1918		13.454	0	1	87621			39488	8707	32585	32609	42896	42896					-0.0943102406563412
NEPRDVGY	8	Unmodified	_NEPRDVGY_					0	0	0		ENSG00000155666|ENST00000286096|KDM8;nc|ENSG00000155666|Q8N371-3|KDM8;ENST00000568792.1_1_16:27226197-27227394:+|nuORF;ENST00000567785.5_1_16:27226197-27231714:+|nuORF	ENSG00000155666|ENST00000286096|KDM8	ENSG00000155666|ENST00000286096|KDM8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.2210693359375	2	475.222331	948.430109	0.16908	8.0352E-05	3.361	0.0015972	3.5301	0.0016776	475.22329380444404	117.06	0.41991	115.69	115.56	115.98	-1.3645					11	7	2	0	0	0	0.028476	1	10966	10966		35.201	3.2459	1	17749			39489	5796	32586	32610	42897	42897					-0.046168530387149076
NEPVLRFD	8	Unmodified	_NEPVLRFD_					0	0	0		nc|ENSG00000138686|Q8IWZ6-2|BBS7;ENSG00000138686|ENST00000264499|BBS7	nc|ENSG00000138686|Q8IWZ6-2|BBS7	nc|ENSG00000138686|Q8IWZ6-2|BBS7	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.8073425292969	2	495.256174	988.497795	-0.6771	-0.00033534	1.1136	0.00055151	0.43648	0.00021617	495.2564815311444	59.076	0.64073	59.076	58.892	59.533	0					33	16	3	0	0	0	0.028476	1	5132	5132		51.335	25.885	1	1164400			39490	4712	32587	32611	42898	42898					0.0030859689210274155
NEPVQNLPI	9	Unmodified	_NEPVQNLPI_					0	0	0		nc|ENSG00000075651|Q13393-4|PLD1;nc|ENSG00000075651|Q13393-2|PLD1;ENSG00000075651|ENST00000351298|PLD1	nc|ENSG00000075651|Q13393-4|PLD1	nc|ENSG00000075651|Q13393-4|PLD1	MULTI-SECPEP	OvCa9_classI_Rep2	2	512.8106689453125	2	512.277106	1022.53966	-0.03673	-1.8816E-05	-0.34979	-0.00017919	-0.38652	-0.000198	512.2764412034809	93.575	1.0773	92.407	91.655	92.732	-1.168					28	20	2	0	0	0	0.027441	1	8368	8368		40.778	7.9657	1	86437			39491	1538	32588	32612	42899	42899					0.029291525806115715
NEPVQNLPI	9	Unmodified	_NEPVQNLPI_					0	0	0		nc|ENSG00000075651|Q13393-4|PLD1;nc|ENSG00000075651|Q13393-2|PLD1;ENSG00000075651|ENST00000351298|PLD1	nc|ENSG00000075651|Q13393-4|PLD1	nc|ENSG00000075651|Q13393-4|PLD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.8118286132812	2	512.277106	1022.53966	-0.68686	-0.00035186	0.48015	0.00024597	-0.2067	-0.00010589	512.2772361152473	95.096	1.2371	92.627	91.524	92.761	-2.4685					31	24	2	0	0	0	0.027441	1	8346	8346		58.782	14.665	1	112020			39492	1538	32588	32612	42900	42900					0.029291525806115715
NEQDKITFF	9	Unmodified	_NEQDKITFF_					0	0	0			REV__ENSG00000120832|ENST00000240050|MTERF2	REV__ENSG00000120832|ENST00000240050|MTERF2	MULTI-MSMS	OvCa99_classI_Rep5	1	571.2816162109375	2	571.279846	1140.54514	-0.4953	-0.00028295	-0.72565	-0.00041455	-1.2209	-0.0006975	571.2793663967677	54.337	0.89034	54.337	54.089	54.98	0					54	20	4	0	0	0	0.48324	1	4369	4369		44.117	0	1	4628600	+		39493	18517	32589	32613	42901	42901					-0.019511686275791362
NEQDTNTK	8	Unmodified	_NEQDTNTK_					0	0	0			REV__KDM3A-LTBP1|1|fusion	REV__KDM3A-LTBP1|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.2598571777344	2	475.214703	948.414853	-0.3452	-0.00016404	2.7589	0.0013111	2.4137	0.001147	475.2157891187375	48.364	0.20699	48.364	48.248	48.455	0					7	4	2	0	0	0	0.028476	1	3548	3548		30.504	0	1	117500	+		39494	28330	32590	32614	42902	42902					-0.06141764626556778
NEQSRVKALQL	11	Unmodified	_NEQSRVKALQL_					0	0	0			REV__nc|ENSG00000058085|Q13753-2|LAMC2	REV__nc|ENSG00000058085|Q13753-2|LAMC2	MSMS	OvCa99_classI_Rep5	1	643.3728637695312	2	643.364776	1284.715	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.98	1	108.98	108.48	109.48	0								0	0	0	0.17453	1	12337	12337		50.034	5.6563	1		+		39495	16725	32591	32615	42903	42903					0.08402947374861469
NERAALLAL	9	Unmodified	_NERAALLAL_					0	0	0			REV__ENSG00000204851|ENST00000599531|PNMA8B	REV__ENSG00000204851|ENST00000599531|PNMA8B	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.3157653808594	2	485.787641	969.56073	-1.1387	-0.00055318	0.98401	0.00047802	-0.15472	-7.516E-05	485.7879966219333	50.851	1.0397	48.057	47.778	48.818	-2.794					33	20	3	0	0	0	0.027449	1	3286	3286		31.955	0	1	33336	+		39496	23189	32592	32616	42904	42904					0.07473162680128098
NERHRRYEVLD	11	Unmodified	_NERHRRYEVLD_					0	0	0			REV__tr|A0A7D6VQE2|A0A7D6VQE2_9CLOTRiboflavinbiosynthesisproteinRibBAOS=ClostridiumintestinaleOX=36845GN=ribBAPE=3SV=1	REV__tr|A0A7D6VQE2|A0A7D6VQE2_9CLOTRiboflavinbiosynthesisproteinRibBAOS=ClostridiumintestinaleOX=36845GN=ribBAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.7521667480469	3	496.255167	1485.74367	-0.45681	-0.0002267	-2.553	-0.001267	-3.0098	-0.0014936	496.2539455839654	56.124	0.94056	56.124	55.641	56.581	0					31	22	2	0	0	0	0.02616	1	4654	4654		19.627	0	1	395630	+		39497	31318	32593	32617	42905	42905					0.020230650040048204
NERHRYDDV	9	Unmodified	_NERHRYDDV_					0	0	0		ENSG00000176381|ENST00000322583|PRR18	ENSG00000176381|ENST00000322583|PRR18	ENSG00000176381|ENST00000322583|PRR18	MULTI-SECPEP	OvCa99_classI_Rep5	1	602.822021484375	2	602.2787	1202.54285	0.16591	9.9921E-05	-1.9818	-0.0011936	-1.8159	-0.0010937	602.2769917368831	105.18	0.48437	105.18	104.96	105.44	0					21	10	3	0	0	0	0.027453	1	11784	11784		30.318	0	1	337720			39498	7601	32594	32618	42906	42906					-0.050322043126925564
NERILSLK	8	Unmodified	_NERILSLK_					0	0	0			REV__tr|A0A7D6ZX49|A0A7D6ZX49_9CLOT16SrRNA(cytosine(967)-C(5))-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=rsmBPE=3SV=1	REV__tr|A0A7D6ZX49|A0A7D6ZX49_9CLOT16SrRNA(cytosine(967)-C(5))-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=rsmBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.7980041503906	2	486.795466	971.57638	-1.3488	-0.00065659	0.79125	0.00038518	-0.55755	-0.00027141	486.7957975902143	50.407	0.82677	47.265	47.026	47.853	-3.1416					43	15	4	0	0	0	0.60899	1	2897	2897		62.107	7.3311	1	348460	+		39499	32315	32595	32619	42907	42907					0.08945449197199196
NERKAPGVM	9	Unmodified	_NERKAPGVM_					0	0	0		MYH6|p.K1758Lfs*37|1|0.03|ENSG00000197616|chr14:23384933-23384934|-/TGAG|frameshift_variant;ENSG00000197616|ENST00000405093|MYH6;MYH6|p.S1271Cfs*26|1|0.05|ENSG00000197616|chr14:23389640-23389641|-/GCTCCCGC|frameshift_variant	MYH6|p.K1758Lfs*37|1|0.03|ENSG00000197616|chr14:23384933-23384934|-/TGAG|frameshift_variant	MYH6|p.K1758Lfs*37|1|0.03|ENSG00000197616|chr14:23384933-23384934|-/TGAG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.3177185058594	2	501.263476	1000.5124	-0.84872	-0.00042543	0.88291	0.00044257	0.034192	1.7139E-05	501.26389286245785	39.953	0.65369	36.999	36.715	37.368	-2.9541					21	12	2	0	0	0	0.027462	1	1660	1660		28.254	0	1	43672			39500	8730	32596	32620	42908	42908					0.012163457685915091
NERKHNLLAS	10	Unmodified	_NERKHNLLAS_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	591.3223876953125	2	591.322911	1180.63127	-0.88609	-0.00052397	0.49222	0.00029106	-0.39388	-0.00023291	591.3232652193527	42.573	1.5079	39.593	39.312	40.82	-2.9804					98	28	5	0	0	0	0.65849	1	2026	2026		35.152	0.97948	1	1476000			39501	3083	32597	32621	42909	42909					0.048178359978237495
NERLFLLNL	9	Unmodified	_NERLFLLNL_					0	0	0			REV__ENST00000379953.6_1_6:6649869-6654873:+|nuORF	REV__ENST00000379953.6_1_6:6649869-6654873:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.3385009765625	2	566.329673	1130.64479	-0.51002	-0.00028884	-2.7638	-0.0015652	-3.2738	-0.001854	566.3283255206125	28.492	0.24807	28.492	28.34	28.588	0					8	4	3	0	0	0	0.027462	1	940	940		34.173	6.2903	1	42904	+		39502	25169	32598	32622	42910	42910					0.08469693777033172
NERLILKET	9	Unmodified	_NERLILKET_					0	0	0			REV__ENSG00000176809|ENST00000584306|LRRC37A3	REV__ENSG00000176809|ENST00000584306|LRRC37A3	MULTI-MSMS	OvCa99_classI_Rep5	1	558.3243408203125	2	558.324588	1114.63462	-0.24432	-0.00013641	-0.75365	-0.00042078	-0.99797	-0.00055719	558.3239910859743	39.572	0.82449	39.572	39.376	40.2	0					34	18	3	0	0	0	0.49652	1	2340	2340		42.864	5.0528	1	559410	+		39503	21963	32599	32623	42911	42911					0.081890860518115
NERLNIVL	8	Unmodified	_NERLNIVL_					0	0	0		tr|A0A553SSQ7|A0A553SSQ7_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03595PE=4SV=1	tr|A0A553SSQ7|A0A553SSQ7_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03595PE=4SV=1	tr|A0A553SSQ7|A0A553SSQ7_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03595PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	485.7875061035156	2	485.787641	969.56073	0.825	0.00040078	-1.6014	-0.00077795	-0.77641	-0.00037717	485.7867400161408	87.055	2.3197	85.623	84.751	87.071	-1.4311					114	45	4	0	0	0	0.66057	1	7600	7600		51.335	0.14276	1	767590			39504	34403	32600	32624	42912	42912					0.07473162680128098
NERLTERYQA	10	Unmodified	_NERLTERYQA_					0	0	0			REV__ENSG00000008300|ENST00000164024|CELSR3	REV__ENSG00000008300|ENST00000164024|CELSR3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	427.9097900390625	3	427.217831	1278.63166	1.3512	0.00057724	-0.1831	-7.8223E-05	1.1681	0.00049902	427.2176112543419	36.568	1.4955	33.676	32.996	34.492	-2.8925					58	29	3	0	0	0	0.027006	1	1364	1364		30.569	10.538	1	19316	+		39505	16451	32601	32625	42913	42913					0.003492109270155197
NERMWKRNEEN	11	Unmodified	_NERMWKRNEEN_					0	0	0			REV__ENST00000481106.5_1_X:80458072-80552723:+|nuORF	REV__ENST00000481106.5_1_X:80458072-80552723:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.704345703125	3	502.568646	1504.68411	-0.27337	-0.00013738	-2.425	-0.0012187	-2.6984	-0.0013561	502.56731466165934	56.305	0.82354	56.305	56.052	56.875	0					41	19	3	0	0	0	0.025995	1	4640	4640		29.551	11.718	1	3376900	+		39506	19001	32602	32626	42914	42914					-0.048045740016959826
NERREQGK	8	Unmodified	_NERREQGK_					0	0	0			REV__ENST00000519326.1_1_8:81942229-81982374:-|nuORF	REV__ENST00000519326.1_1_8:81942229-81982374:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.29473876953125	2	508.765229	1015.5159	1.5216	0.00077414	2.9745	0.0015133	4.4961	0.0022874	508.7669808363296	105.88	0.56826	105.88	105.62	106.18	0					24	12	3	0	0	0	0.028476	1	11888	11888		66.429	16.893	1	576390	+		39507	23744	32603	32627	42915	42915					0.008767318668105872
NERYHQRKEWW	11	Unmodified	_NERYHQRKEWW_					0	0	0			REV__ENST00000411999.1_1_2:197893450-197893558:-|nuORF	REV__ENST00000411999.1_1_2:197893450-197893558:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.8430786132812	3	544.599046	1630.77531	-1.0069	-0.00054837	-1.9641	-0.0010697	-2.9711	-0.001618	544.5978147125306	27.239	0.39856	27.239	27.092	27.491	0					16	7	3	0	0	0	0.026482	1	810	810		4.8861	1.4774	1	69751	+		39508	25493	32604	32628	42916	42916					-0.014849422420866176
NESAGKLRETE	11	Unmodified	_NESAGKLRETE_					0	0	0			REV__ENSG00000163623|ENST00000295886|NKX6-1	REV__ENSG00000163623|ENST00000295886|NKX6-1	MULTI-MSMS	OvCa99_classI_Rep5	1	617.3088989257812	2	617.307123	1232.59969	1.599	0.00098706	-0.86651	-0.0005349	0.73247	0.00045216	617.3064189997032	107.15	0.9686	107.15	106.85	107.82	0					78	22	5	0	0	0	0.4646	1	12066	12066		56.434	3.3448	1	6004200	+		39509	20861	32605	32629	42917	42917					-0.007302015468440004
NESFFKVK	8	Unmodified	_NESFFKVK_					0	0	0			REV__tr|A0A7D6ZWW8|A0A7D6ZWW8_9CLOTWingedhelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_20740PE=4SV=1	REV__tr|A0A7D6ZWW8|A0A7D6ZWW8_9CLOTWingedhelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_20740PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.8146057128906	2	499.768917	997.523281	-0.9872	-0.00049337	2.2652	0.0011321	1.278	0.00063869	499.7699942827837	109.13	1.1868	107.4	107.02	108.21	-1.7256					39	22	2	0	0	0	0.028476	1	9982	9982		37.159	14.117	1	72122	+		39510	32303	32606	32630	42918	42918					0.024420714145321654
NESGVRELL	9	Unmodified	_NESGVRELL_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1;nc|ENSG00000115267|Q9BYX4-2|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.7735595703125	2	508.772188	1015.52982	2.1089	0.0010729	-0.38673	-0.00019676	1.7221	0.00087617	508.7719471038631	76.533	0.68432	76.533	76.238	76.922	0					61	16	5	0	0	0	0.021573	2	7684	7656;7684		145.16	40.409	1	16497000			39511	3077	32607	32631	42919;42920	42920					0.022679645752418764
NESKTILKL	9	Unmodified	_NESKTILKL_					0	0	0		ENST00000466185.1_1_6:4052221-4056689:+|nuORF;ENST00000463634.6_1_6:4041126-4056780:+|nuORF;ENSG00000112739|ENST00000337659|PRPF4B	ENST00000466185.1_1_6:4052221-4056689:+|nuORF	ENST00000466185.1_1_6:4052221-4056689:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	523.3185424804688	2	523.316232	1044.61791	-0.16258	-8.5079E-05	-0.22293	-0.00011667	-0.38551	-0.00020174	523.3160159008654	63.548	0.91276	63.548	63.257	64.17	0					58	22	5	0	0	0	0.066102	1	5741	5741		109.48	8.2257	1	4735000			39512	2924	32608	32632	42921	42921					0.09738585165860059
NESKTLLIK	9	Unmodified	_NESKTLLIK_					0	0	0			REV__nc|ENSG00000126337|O76013-2|KRT36	REV__nc|ENSG00000126337|O76013-2|KRT36	MULTI-MSMS	OvCa99_classI_Rep5	1	523.3184814453125	2	523.316232	1044.61791	-0.16258	-8.5079E-05	-0.22293	-0.00011667	-0.38551	-0.00020174	523.3160159008654	63.548	0.91276	63.548	63.257	64.17	0					58	22	5	0	0	0	0.055627	1	5714	5714		115.49	0	1	4735000	+	+	39513	16182	32609	32633	42922	42922					0.09738585165860059
NESLLKARA	9	Unmodified	_NESLLKARA_					0	0	0		ENSG00000100625|ENST00000216513|SIX4	ENSG00000100625|ENST00000216513|SIX4	ENSG00000100625|ENST00000216513|SIX4	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.28643798828125	2	501.290548	1000.56654	1.3674	0.00068548	-1.5595	-0.00078175	-0.19204	-9.6267E-05	501.2895121117765	137.98	2.3901	136.45	135.78	138.17	-1.5284					99	50	3	0	0	0	0.44568	1	13363	13363		47.657	9.8458	1	64432			39514	2092	32610	32634	42923	42923					0.06628261191792717
NESLRVGNRR	10	Unmodified	_NESLRVGNRR_					0	0	0			REV__tr|A0A553SJS4|A0A553SJS4_NIACIPeptidaseM48domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_17470PE=3SV=1	REV__tr|A0A553SJS4|A0A553SJS4_NIACIPeptidaseM48domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_17470PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	600.850341796875	2	600.831434	1199.64832	-0.040698	-2.4453E-05	1.7475	0.00105	1.7068	0.0010255	600.8311855144723	82.591	0.88474	80.992	80.436	81.321	-1.5988					22	16	2	0	0	0	0.026714	1	7054	7054		42.864	8.6917	1	17938	+		39515	30037	32611	32635	42924	42924					0.05647756603593734
NESSVKKKQLN	11	Unmodified	_NESSVKKKQLN_					0	0	0			REV__ENST00000256544.7_2_15:34434362-34434515:-|nuORF	REV__ENST00000256544.7_2_15:34434362-34434515:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	424.890380859375	3	425.573614	1273.69901	-0.054741	-2.3296E-05	0.0022343	9.5084E-07	-0.052506	-2.2345E-05	425.5734074256754	20.56	0.20435	19.222	19.107	19.311	-1.3386					5	3	2	0	0	0	0.026033	1	68	68		17.167	3.6588	1	5693.3	+		39516	23891	32612	32636	42925	42925					0.07311241137949764
NESVVKEML	9	Unmodified	_NESVVKEML_					0	0	0		ENSG00000115233|ENST00000409682|PSMD14;ENST00000477232.5_1_2:162241962-162267908:+|nuORF	ENSG00000115233|ENST00000409682|PSMD14	ENSG00000115233|ENST00000409682|PSMD14	MULTI-MSMS	OvCa99_classI_Rep5	1	524.771240234375	2	524.7708	1047.52705	1.6569	0.0008695	0.19784	0.00010382	1.8547	0.00097332	524.7708230157245	82.014	1.3021	82.014	81.776	83.078	0					54	30	2	0	0	0	0.046778	1	8490	8490		120.87	22.239	1	5255700			39517	3073	32613	32637	42926	42926					0.005183731260785862
NESWRITKI	9	Unmodified	_NESWRITKI_					0	0	0		nc|ENSG00000087053|Q13614-2|MTMR2;ENSG00000087053|ENST00000346299|MTMR2	nc|ENSG00000087053|Q13614-2|MTMR2	nc|ENSG00000087053|Q13614-2|MTMR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.8417358398438	2	573.81693	1145.61931	2.0909	0.0011998	-0.97427	-0.00055905	1.1166	0.00064072	574.3180476957479	76.301	0.40681	76.301	76.036	76.443	0					15	9	2	0	0	0	0.027462	1	7640	7640		42.864	7.246	1	286050			39518	1759	32614	32638	42927	42927					0.052322192545943835
NETDTPAQL	9	Unmodified	_NETDTPAQL_					0	0	0		ENSG00000188612|ENST00000420826|SUMO2;ENSG00000184900|ENST00000332859|SUMO3;nc|ENSG00000184900|P55854-2|SUMO3	ENSG00000188612|ENST00000420826|SUMO2	ENSG00000188612|ENST00000420826|SUMO2	MULTI-MSMS	OvCa99_classI_Rep5	1	494.7345275878906	2	494.732729	987.450904	-0.37701	-0.00018652	0.98659	0.0004881	0.60959	0.00030158	494.7331663599048	71.412	0.72727	71.412	71.15	71.877	0					53	17	4	0	0	0	0.040625	2	6922	6893;6922		126.24	30.427	1	8801300			39519	8484	32615	32639	42928;42929	42929					-0.043323074497266134
NETDTPAQL	9	Unmodified	_NETDTPAQL_					0	0	0		ENSG00000188612|ENST00000420826|SUMO2;ENSG00000184900|ENST00000332859|SUMO3;nc|ENSG00000184900|P55854-2|SUMO3	ENSG00000188612|ENST00000420826|SUMO2	ENSG00000188612|ENST00000420826|SUMO2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	494.732729	987.450904	-0.26717	-0.00013218	0.37393	0.000185	0.10676	5.2818E-05	494.73275795130974	74.378	0.72282	71.147	70.906	71.629	-3.2308	-0.1325	-0.000504	NaN	126.24	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59635			39520	8484	32615	32639							-0.043323074497266134
NETFLLIFF	9	Unmodified	_NETFLLIFF_					0	0	0			REV__tr|A0A553SU61|A0A553SU61_NIACICPBPfamilyintramembranemetalloproteaseOS=NialliacirculansOX=1397GN=CEQ21_06325PE=4SV=1	REV__tr|A0A553SU61|A0A553SU61_NIACICPBPfamilyintramembranemetalloproteaseOS=NialliacirculansOX=1397GN=CEQ21_06325PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	572.3094482421875	2	572.307875	1142.6012	1.2056	0.00068998	1.2346	0.00070656	2.4402	0.0013965	572.3083575402993	130.93	0.76114	130.93	130.58	131.34	0					40	15	4	0	0	0	0.29717	1	15203	15203		63.306	0	1	553200	+		39521	31042	32616	32640	42930	42930					0.0356008427991128
NETHQKQLD	9	Unmodified	_NETHQKQLD_					0	0	0			REV__ENSG00000154240|ENST00000535342|CEP112	REV__ENSG00000154240|ENST00000535342|CEP112	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.7839965820312	2	556.770177	1111.5258	3.0187	0.0016807	2.3229	0.0012933	5.3416	0.002974	556.771137519577	96.298	0.4199	96.298	96.039	96.459	0					13	9	2	0	0	0	0.027441	1	10565	10565		32.812	9.2897	1	216030	+		39522	20370	32617	32641	42931	42931					-0.025501249184799235
NETLIFWR	8	Unmodified	_NETLIFWR_					0	0	0			REV__CYTH4|p.D285E|1|0.27|ENSG00000100055|chr22:37311034-37311034|C/G|missense_variant	REV__CYTH4|p.D285E|1|0.27|ENSG00000100055|chr22:37311034-37311034|C/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.8004150390625	2	539.787641	1077.56073	2.2657	0.001223	-4.134	-0.0022315	-1.8683	-0.0010085	539.785383548728	95.14	0.50546	95.14	94.905	95.41	0					19	11	2	0	0	0	0.028476	1	10344	10344		79.451	10.664	1	540840	+		39523	16265	32618	32642	42932	42932					0.02505162680131434
NETLLLFAR	9	Unmodified	_NETLLLFAR_					0	0	0			REV__ENST00000483771.5_1_10:86004846-86007644:+|nuORF	REV__ENST00000483771.5_1_10:86004846-86007644:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.2811279296875	2	538.808574	1075.60259	-0.20107	-0.00010834	1.7778	0.00095791	1.5767	0.00084957	538.8095180896229	61.956	1.0849	61.956	61.416	62.501	0					31	25	2	0	0	0	0.027461	1	5522	5522		32.812	0	1	292320	+		39524	26535	32619	32643	42933	42933					0.06781718368642942
NETLLNESAD	10	Unmodified	_NETLLNESAD_					0	0	0			REV__ENSG00000153066|ENST00000283033|TXNDC11	REV__ENSG00000153066|ENST00000283033|TXNDC11	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.8036499023438	2	553.254025	1104.4935	-0.88735	-0.00049093	-4.244	-0.002348	-5.1314	-0.002839	553.2511531365412	42.242	0.45123	39.262	39.167	39.618	-2.9804					12	8	2	0	0	0	0.026734	1	1981	1981		18.262	0	1	68198	+		39525	20319	32620	32644	42934	42934					-0.05456957112141936
NETLYLLYN	9	Unmodified	_NETLYLLYN_					0	0	0		sp|P16772|UL130_HCMVAUncharacterizedproteinUL130OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL130PE=1SV=1;sp|F5HCP3|UL130_HCMVMEnvelopeglycoproteinUL130OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL130PE=1SV=1	sp|P16772|UL130_HCMVAUncharacterizedproteinUL130OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL130PE=1SV=1	sp|P16772|UL130_HCMVAUncharacterizedproteinUL130OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL130PE=1SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.8078002929688	2	571.790047	1141.56554	1.9289	0.0011029	0.91456	0.00052293	2.8434	0.0016258	571.7907352284931	98.745	0.57726	98.745	98.419	98.996	0					18	13	2	0	0	0	0.027462	1	10866	10866		39.253	0	1	211320			39526	32858	32621	32645	42935	42935					0.00042002032250820776
NETQKISQL	9	Unmodified	_NETQKISQL_					0	0	0		nc|ENSG00000140464|P29590-11|PML;ENSG00000140464|ENST00000268058|PML	nc|ENSG00000140464|P29590-11|PML	nc|ENSG00000140464|P29590-11|PML	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.7858276367188	2	530.785296	1059.55604	-0.64861	-0.00034427	0.060082	3.1891E-05	-0.58853	-0.00031238	530.7851970696408	60.853	1.3618	57.423	57.095	58.456	-3.43					62	27	4	0	0	0	0.0083004	2	4163	4144;4163		204.42	50.306	1	574250			39527	4843	32622	32646	42936;42937	42937					0.028642337467317702
NETQKISQL	9	Unmodified	_NETQKISQL_					0	0	0		nc|ENSG00000140464|P29590-11|PML;ENSG00000140464|ENST00000268058|PML	nc|ENSG00000140464|P29590-11|PML	nc|ENSG00000140464|P29590-11|PML	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.785296	1059.55604	-1.5229	-0.00080833	0.90091	0.00047819	-0.62198	-0.00033014	530.7857312981357	60.328	1.3639	57.558	56.933	58.297	-2.7702	0.067593	0.00069124	NaN	204.42	50	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91226			39528	4843	32622	32646							0.028642337467317702
NETVHKKT	8	Unmodified	_NETVHKKT_					0	0	0		ENSG00000183735|ENST00000331710|TBK1	ENSG00000183735|ENST00000331710|TBK1	ENSG00000183735|ENST00000331710|TBK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.8083801269531	2	478.761623	955.508694	0.28906	0.00013839	2.8515	0.0013652	3.1405	0.0015036	478.76357840646693	68.827	0.14934	65.337	65.212	65.362	-3.4902					4	2	2	0	0	0	0.028476	1	5116	5116		24.203	0	1	10579			39529	8098	32623	32647	42938	42938					0.02915999266383551
NETVREEM	8	Unmodified	_NETVREEM_					0	0	0		tr|A0A553SMM1|A0A553SMM1_NIACIAlpha-amylaseOS=NialliacirculansOX=1397GN=CEQ21_22720PE=3SV=1	tr|A0A553SMM1|A0A553SMM1_NIACIAlpha-amylaseOS=NialliacirculansOX=1397GN=CEQ21_22720PE=3SV=1	tr|A0A553SMM1|A0A553SMM1_NIACIAlpha-amylaseOS=NialliacirculansOX=1397GN=CEQ21_22720PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.2578125	2	504.226756	1006.43896	-0.44319	-0.00022347	-0.10139	-5.1123E-05	-0.54458	-0.00027459	504.2266862031821	55.749	0.37036	55.749	55.641	56.011	0					20	8	3	0	0	0	0.028476	1	4598	4598		34.173	0	1	437740			39530	33848	32624	32648	42939	42939					-0.06400247464534914
NEVDPHPMP	9	Unmodified	_NEVDPHPMP_					0	0	0			REV__ENSG00000160613|ENST00000320934|PCSK7	REV__ENSG00000160613|ENST00000320934|PCSK7	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.2630004882812	2	518.231842	1034.44913	-0.39519	-0.0002048	0.73365	0.0003802	0.33845	0.0001754	518.2323180692829	52.985	0.47744	52.985	52.61	53.087	0					12	10	2	0	0	0	0.027462	1	4162	4162		21.96	12.254	1	168330	+		39531	20667	32625	32649	42940	42940					-0.06671639739329294
NEVEQRHTL	9	Unmodified	_NEVEQRHTL_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	OvCa99_classI_Rep5	1	563.2852172851562	2	563.285994	1124.55744	-0.086794	-4.889E-05	-0.19472	-0.00010968	-0.28151	-0.00015857	563.2858009609371	36.121	0.5055	36.121	35.799	36.304	0					29	10	4	0	0	0	0.043101	1	1874	1874		124.08	38.919	1	579610			39532	1144	32626	32650	42941	42941					0.00013867835468772682
NEVEQRHTL	9	Unmodified	_NEVEQRHTL_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	OvCa9_classI_Rep2	2	563.28662109375	2	563.285994	1124.55744	0.62639	0.00035283	-0.84565	-0.00047634	-0.21926	-0.00012351	563.285355859724	40.778	1.2306	38.068	37.848	39.078	-2.7097					56	24	4	0	0	0	0.035142	3	2088	2088;2093;2101		131.03	35.216	1	329850			39533	1144	32626	32650	42942;42943;42944	42942					0.00013867835468772682
NEVEQRHTL	9	Unmodified	_NEVEQRHTL_					0	0	0		ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.2861328125	2	563.285994	1124.55744	0.49383	0.00027817	-1.3094	-0.00073756	-0.81555	-0.00045939	563.2852151053488	41.029	1.9608	38.075	37.841	39.802	-2.9541					98	37	6	0	0	0	0.0094273	5	1803	1803;1814;1828;1840;1853		171.53	44.07	1	1625900			39534	1144	32626	32650	42945;42946;42947;42948;42949	42945					0.00013867835468772682
NEVFFFSI	8	Unmodified	_NEVFFFSI_					0	0	0			REV__tr|A0A553SF14|A0A553SF14_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_08080PE=4SV=1	REV__tr|A0A553SF14|A0A553SF14_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_08080PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	502.2862243652344	2	501.750193	1001.48583	-1.8635	-0.000935	-2.236	-0.0011219	-4.0995	-0.0020569	501.7489681266464	84.566	1.2594	83.02	82.535	83.795	-1.5462					52	24	3	0	0	0	0.028476	1	7236	7236		35.618	0	1	84317	+		39535	29526	32627	32651	42950	42950					-0.01485019851099878
NEVFLKIIN	9	Unmodified	_NEVFLKIIN_					0	0	0		tr|A0A7D6ZI93|A0A7D6ZI93_9CLOTATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06120PE=4SV=1	tr|A0A7D6ZI93|A0A7D6ZI93_9CLOTATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06120PE=4SV=1	tr|A0A7D6ZI93|A0A7D6ZI93_9CLOTATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06120PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.3096923828125	2	545.318774	1088.623	-0.31351	-0.00017096	0.60346	0.00032908	0.28996	0.00015812	545.3188744545733	51.063	0.34144	51.063	50.907	51.248	0					14	7	3	0	0	0	0.027433	1	3913	3913		71.296	30.518	1	252560			39536	35609	32628	32652	42951	42951					0.08222889028479585
NEVFLKKTV	9	Unmodified	_NEVFLKKTV_					0	0	0			REV__ENST00000565846.2_1_15:56485023-56485380:-|nuORF	REV__ENST00000565846.2_1_15:56485023-56485380:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	539.3186645507812	2	539.318774	1076.623	1.2108	0.00065303	0.15	8.0897E-05	1.3608	0.00073392	539.3187828868322	123.49	1.1039	123.49	123.04	124.15	0					66	23	5	0	0	0	0.1804	1	14240	14240		79.713	5.4575	1	1058300	+		39537	27691	32629	32653	42952	42952					0.08774889028450161
NEVFNDVRL	9	Unmodified	_NEVFNDVRL_					0	0	0		ENSG00000116489|ENST00000263168|CAPZA1;ENST00000485542.5_1_1:113162466-113192092:+|nuORF;ENST00000476936.5_1_1:113162466-113209756:+|nuORF;ENST00000464669.1_1_7:116502674-116546397:+|nuORF;nc|ENSG00000198898|P47755-2|CAPZA2;CAPZA2-C7orf33|1|fusion;ENSG00000198898|ENST00000361183|CAPZA2	ENSG00000116489|ENST00000263168|CAPZA1;ENSG00000198898|ENST00000361183|CAPZA2	ENSG00000198898|ENST00000361183|CAPZA2	MULTI-MSMS	OvCa99_classI_Rep5	1	553.287353515625	2	553.285463	1104.55637	2.6838	0.0014849	-0.60675	-0.0003357	2.0771	0.0011492	553.2850575812846	96.397	0.84071	96.397	96.126	96.966	0					30	19	2	0	0	0	0.1149	1	10559	10559		93.143	10.393	1	3441500			39538	3181;8903	32630	32654	42953	42953					0.008276534665810686
NEVGVEEQQV	10	Unmodified	_NEVGVEEQQV_					0	0	0			REV__ENSG00000189325|ENST00000437635|BNIP5	REV__ENSG00000189325|ENST00000437635|BNIP5	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.775634765625	2	565.769842	1129.52513	3.5624	0.0020155	-0.33073	-0.00018712	3.2316	0.0018284	566.2717804662774	97.446	0.819	97.446	97.093	97.912	0					21	18	2	0	0	0	0.026895	1	10691	10691		98.629	31.136	1	174200	+		39539	22772	32631	32655	42954	42954					-0.034449643582092904
NEVIGIRQL	9	Unmodified	_NEVIGIRQL_					0	0	0		nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B;ENST00000534521.5_1_11:111612322-111631898:-|nuORF;PPP2R1A|p.M499*|1|0.2|ENSG00000105568|chr19:52221110-52221110|A/-|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B	nc|ENSG00000137713|P30154-4|PPP2R1B	nc|ENSG00000137713|P30154-4|PPP2R1B	MULTI-MSMS	OvCa9_classI_Rep3	3	521.3069458007812	2	521.306198	1040.59784	-0.5624	-0.00029318	-0.051114	-2.6646E-05	-0.61352	-0.00031983	521.3062020063311	90.264	2.3254	88.184	87.798	90.124	-2.0805					76	45	2	0	0	0	0.0083158	1	5627	5627		204.62	19.075	1	3894900			39540	4608	32632	32656	42955	42955					0.07916834225898128
NEVKIYSL	8	Unmodified	_NEVKIYSL_					0	0	0		nc|ENSG00000115761|Q9BSC4-2|NOL10;nc|ENSG00000115761|Q9BSC4-4|NOL10;ENSG00000115761|ENST00000381685|NOL10;ENST00000473087.1_1_2:10822102-10830002:-|nuORF	nc|ENSG00000115761|Q9BSC4-2|NOL10	nc|ENSG00000115761|Q9BSC4-2|NOL10	MULTI-MSMS	OvCa9_classI_Rep4_	4	483.2696838378906	2	483.26875	964.522947	-1.2121	-0.00058579	0.46363	0.00022406	-0.74851	-0.00036173	483.26885179968303	87.385	1.4098	84.758	84.448	85.858	-2.6269					46	27	2	0	0	0	0.37357	1	7431	7431		93.195	0	1	328660			39541	3126	32633	32657	42956	42956					0.039266516946554475
NEVKIYSL	8	Unmodified	_NEVKIYSL_					0	0	0		nc|ENSG00000115761|Q9BSC4-2|NOL10;nc|ENSG00000115761|Q9BSC4-4|NOL10;ENSG00000115761|ENST00000381685|NOL10;ENST00000473087.1_1_2:10822102-10830002:-|nuORF	nc|ENSG00000115761|Q9BSC4-2|NOL10	nc|ENSG00000115761|Q9BSC4-2|NOL10	MULTI-MATCH	OvCa9_classI_Rep2	2		2	483.26875	964.522947	-0.44241	-0.0002138	-0.032446	-1.568E-05	-0.47485	-0.00022948	483.26858988806003	86.352	1.6842	84.861	84.047	85.732	-1.4906	0.13097	-0.00045866	NaN	93.195	51	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186690			39542	3126	32633	32657							0.039266516946554475
NEVKIYSL	8	Unmodified	_NEVKIYSL_					0	0	0		nc|ENSG00000115761|Q9BSC4-2|NOL10;nc|ENSG00000115761|Q9BSC4-4|NOL10;ENSG00000115761|ENST00000381685|NOL10;ENST00000473087.1_1_2:10822102-10830002:-|nuORF	nc|ENSG00000115761|Q9BSC4-2|NOL10	nc|ENSG00000115761|Q9BSC4-2|NOL10	MULTI-MATCH	OvCa9_classI_Rep3	3		2	483.26875	964.522947	-1.1659	-0.00056347	1.0198	0.00049284	-0.14614	-7.0627E-05	483.2690244216172	86.748	1.4754	84.572	84.23	85.706	-2.1768	-0.15852	0.00055838	NaN	93.195	50	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	405720			39543	3126	32633	32657							0.039266516946554475
NEVKYLKDV	9	Unmodified	_NEVKYLKDV_					0	0	0			REV__ENSG00000184056|ENST00000333371|VPS33B	REV__ENSG00000184056|ENST00000333371|VPS33B	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.27783203125	2	554.305864	1106.59717	-0.59325	-0.00032884	-0.21839	-0.00012105	-0.81164	-0.00044989	554.8076177665805	51.908	0.29094	51.908	51.747	52.038	0					9	6	2	0	0	0	0.027462	1	4032	4032		45.972	6.7194	1	85045	+		39544	22400	32634	32658	42957	42957					0.04813994786195508
NEVLKNPLLK	10	Unmodified	_NEVLKNPLLK_					0	0	0		tr|A0A7D6VQ28|A0A7D6VQ28_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13885PE=4SV=1	tr|A0A7D6VQ28|A0A7D6VQ28_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13885PE=4SV=1	tr|A0A7D6VQ28|A0A7D6VQ28_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13885PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3565673828125	2	584.358431	1166.70231	-1.7162	-0.0010029	-1.68	-0.00098173	-3.3962	-0.0019846	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.78463	1	14350	14350		20.947	1.587	1	833330			39545	34816	32635	32659	42958	42958					0.12562535982578993
NEVLVIKIN	9	Unmodified	_NEVLVIKIN_					0	0	0			REV__tr|A0A7D6VPT7|A0A7D6VPT7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18050PE=4SV=1	REV__tr|A0A7D6VPT7|A0A7D6VPT7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18050PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.2841186523438	2	521.318774	1040.623	-0.9842	-0.00051308	-0.18581	-9.6868E-05	-1.17	-0.00060995	521.3185677046087	67.86	1.027	67.86	67.371	68.398	0					43	25	3	0	0	0	0.027462	1	6334	6334		34.173	1.3601	1	679660	+		39546	31276	32636	32660	42959	42959					0.10430889028475576
NEVLVLFH	8	Unmodified	_NEVLVLFH_					0	0	0			REV__nc|ENSG00000165792|Q9H7H0-2|METTL17	REV__nc|ENSG00000165792|Q9H7H0-2|METTL17	MULTI-SECPEP	OvCa9_classI_Rep2	2	485.7873840332031	2	485.77146	969.528367	1.6624	0.00080753	0.84227	0.00040915	2.5046	0.0012167	485.771934607842	87.778	0.98373	86.347	85.841	86.825	-1.4311					27	19	2	0	0	0	0.028476	1	7608	7608		50.025	0	1	41553	+		39547	21115	32637	32661	42960	42960					0.0423837527713431
NEVPPRQQPP	10	Unmodified	_NEVPPRQQPP_					0	0	0			REV__ENST00000217173.6_1_20:3140590-3140698:-|nuORF	REV__ENST00000217173.6_1_20:3140590-3140698:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.2881469726562	2	581.304187	1160.59382	1.9292	0.0011214	0.77737	0.00045189	2.7066	0.0015733	581.3045329528085	115.55	0.79099	115.55	115.39	116.19	0					21	16	2	0	0	0	0.026826	1	13226	13226		36.447	0	1	174570	+		39548	23728	32638	32662	42961	42961					0.019947447322010703
NEVPVKEL	8	Unmodified	_NEVPVKEL_					0	0	0		ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	ENSG00000108829|ENST00000225972|LRRC59	MULTI-MSMS	OvCa9_classI_Rep4_	4	464.26177978515625	2	464.260925	926.507297	-1.0209	-0.00047398	0.82743	0.00038414	-0.19349	-8.9832E-05	464.26119657143863	69.802	1.455	66.321	65.96	67.415	-3.4812					51	29	2	0	0	0	0.31378	2	5254	5241;5254		104.75	10.74	1	742650			39549	2679	32639	32663	42962;42963	42963					0.04110365177609765
NEVSSPSIS	9	Unmodified	_NEVSSPSIS_					0	0	0			REV__nc|ENSG00000077092|P10826-3|RARB	REV__nc|ENSG00000077092|P10826-3|RARB	MULTI-SECPEP	OvCa99_classI_Rep5	1	461.2151184082031	2	460.221997	918.429441	-0.62498	-0.00028763	2.276	0.0010475	1.651	0.00075982	460.222905063357	35.124	0.42818	35.124	34.911	35.339	0					11	8	2	0	0	0	0.027462	1	1771	1771		29.15	0	1	56241	+		39550	17002	32640	32664	42964	42964					-0.033036924784141775
NEVVFHHSE	9	Unmodified	_NEVVFHHSE_					0	0	0		chr1:27428933-27484505|105|11.39|0.41|4.8|-|0|WASF2,None|3	chr1:27428933-27484505|105|11.39|0.41|4.8|-|0|WASF2,None|3	chr1:27428933-27484505|105|11.39|0.41|4.8|-|0|WASF2,None|3	MULTI-MSMS	OvCa99_classI_Rep5	1	549.2530517578125	2	549.254163	1096.49377	0.85258	0.00046828	1.2806	0.00070339	2.1332	0.0011717	549.2529692787721	156.45	1.5082	156.45	156.09	157.6	0					56	29	3	0	0	0	0.56889	1	18347	18347		35.618	0	1	170550			39551	254	32641	32665	42965	42965					-0.05061492601635109
NEWFVKLL	8	Unmodified	_NEWFVKLL_					0	0	0			REV__nc|ENSG00000175806|Q9UJ68-2|MSRA	REV__nc|ENSG00000175806|Q9UJ68-2|MSRA	MULTI-SECPEP	OvCa9_classI_Rep3	3	523.8150634765625	2	524.794935	1047.57532	0.941	0.00049383	-2.7422	-0.0014391	-1.8012	-0.00094525	524.7932238216955	122.15	1.4646	121.12	121.01	122.47	-1.0286					38	27	2	0	0	0	0.028476	1	9479	9479		37.159	5.2042	1	30728	+		39552	21916	32642	32666	42966	42966					0.05343234828296772
NEWIPERA	8	Unmodified	_NEWIPERA_					0	0	0		ENST00000544487.5_1_16:30770684-30771803:-|nuORF	ENST00000544487.5_1_16:30770684-30771803:-|nuORF	ENST00000544487.5_1_16:30770684-30771803:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3153076171875	2	507.753798	1013.49304	-0.38556	-0.00019577	-2.924	-0.0014847	-3.3096	-0.0016804	507.7519088850885	105.59	0.39632	103.57	103.35	103.74	-2.0161					11	7	2	0	0	0	0.028476	1	9598	9598		54.776	22.821	1	19068			39553	13507	32643	32667	42967	42967					-0.013162872506768508
NEWIPERA	8	Unmodified	_NEWIPERA_					0	0	0		ENST00000544487.5_1_16:30770684-30771803:-|nuORF	ENST00000544487.5_1_16:30770684-30771803:-|nuORF	ENST00000544487.5_1_16:30770684-30771803:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	507.753798	1013.49304	-0.01833	-9.3072E-06	-3.074	-0.0015609	-3.0924	-0.0015702	508.25344177512034	104.87	0.62384	103.52	103.26	103.89	-1.3482	-0.026069	-5.7443E-05	NaN	54.776	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16790			39554	13507	32643	32667							-0.013162872506768508
NEYDVLYFG	9	Unmodified	_NEYDVLYFG_					0	0	0			REV__tr|A0A7D6ZUY1|A0A7D6ZUY1_9CLOTPLP-dependentaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12165PE=3SV=1	REV__tr|A0A7D6ZUY1|A0A7D6ZUY1_9CLOTPLP-dependentaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12165PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	560.277099609375	2	560.253297	1118.49204	-0.71367	-0.00039984	3.2491	0.0018203	2.5354	0.0014205	560.2556946005105	107.46	0.31106	105.58	105.38	105.69	-1.8785					6	5	2	0	0	0	0.027462	1	9818	9818		16.473	0	1	11568	+		39555	32231	32644	32668	42968	42968					-0.06246546410238807
NEYEKEIKEL	10	Unmodified	_NEYEKEIKEL_					0	0	0		tr|A0A7D6VS42|A0A7D6VS42_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09435PE=4SV=1	tr|A0A7D6VS42|A0A7D6VS42_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09435PE=4SV=1	tr|A0A7D6VS42|A0A7D6VS42_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09435PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	432.2215881347656	3	432.222359	1293.64525	-1.8932	-0.0008183	1.9037	0.0008228	0.010411	4.5E-06	432.22317716770107	63.149	1.9449	60.405	59.899	61.844	-2.7444					99	36	4	0	0	0	0.41036	1	4765	4765		66.962	7.0311	1	676300			39556	34984	32645	32669	42969	42969					0.010170239155968375
NEYINTLVLL	10	Unmodified	_NEYINTLVLL_					0	0	0			REV__tr|A0A7D6VT92|A0A7D6VT92_9CLOTPD40domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16285PE=4SV=1	REV__tr|A0A7D6VT92|A0A7D6VT92_9CLOTPD40domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16285PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.3057250976562	2	596.334621	1190.65469	-0.025636	-1.5288E-05	0.018058	1.0769E-05	-0.0075785	-4.5193E-06	596.8366038417481	47.221	0.258	47.221	47.121	47.379	0					6	5	2	0	0	0	0.027028	1	3389	3389		18.262	0	1	56157	+		39557	31582	32646	32670	42970	42970					0.06698836991768076
NEYKKILLL	9	Unmodified	_NEYKKILLL_					0	0	0		ENSG00000163563|ENST00000368141|MNDA;ENST00000491210.1_1_1:158811943-158812264:+|nuORF	ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3482055664062	2	567.350074	1132.6856	1.19	0.00067515	-2.1033	-0.0011933	-0.91332	-0.00051817	567.3490427775571	90.747	2.5453	89.445	89.077	91.622	-1.302					112	48	5	0	0	0	0.015391	8	8031	8023;8026;8031;8039;8046;8053;8059;8065		152.47	47.696	1	950830			39558	6327	32647	32671	42971;42972;42973;42974;42975;42976;42977;42978	42973					0.12456035096670348
NEYKKILLL	9	Unmodified	_NEYKKILLL_					0	0	0		ENSG00000163563|ENST00000368141|MNDA;ENST00000491210.1_1_1:158811943-158812264:+|nuORF	ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3497924804688	2	567.350074	1132.6856	-1.2402	-0.00070364	0.1824	0.00010349	-1.0578	-0.00060015	567.3501246717983	91.814	3.2009	89.79	89.382	92.583	-2.0241					112	64	4	0	0	0	0.0094524	6	5783	5766;5770;5777;5783;5790;5797		171.38	36.574	1	1136300			39559	6327	32647	32671	42979;42980;42981;42982;42983;42984	42982					0.12456035096670348
NEYKKILLL	9	Unmodified	_NEYKKILLL_					0	0	0		ENSG00000163563|ENST00000368141|MNDA;ENST00000491210.1_1_1:158811943-158812264:+|nuORF	ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3499755859375	2	567.350074	1132.6856	-0.15448	-8.7644E-05	-0.62737	-0.00035594	-0.78185	-0.00044359	567.349810033163	92.316	1.6548	89.774	89.415	91.07	-2.5425					92	32	4	0	0	0	0.022645	4	8010	8000;8010;8022;8038		143.89	35.799	1	1056900			39560	6327	32647	32671	42985;42986;42987;42988	42986					0.12456035096670348
NEYLKEKKI	9	Unmodified	_NEYLKEKKI_					0	0	0		tr|A0A7D6VTS6|A0A7D6VTS6_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_18070PE=3SV=1	tr|A0A7D6VTS6|A0A7D6VTS6_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_18070PE=3SV=1	tr|A0A7D6VTS6|A0A7D6VTS6_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_18070PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	582.8339233398438	2	582.834788	1163.65502	-0.78135	-0.0004554	0.60154	0.0003506	-0.17981	-0.0001048	582.8349775813373	121.7	1.0886	121.5	121.2	122.29	-0.19718					47	21	3	0	0	0	0.51865	1	11771	11771		40.778	4.3314	1	119850			39561	35138	32648	32672	42989	42989					0.07974256711622729
NEYLYRVI	8	Unmodified	_NEYLYRVI_					0	0	0			REV__nc|ENSG00000010310|P48546-2|GIPR	REV__nc|ENSG00000010310|P48546-2|GIPR	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.2861328125	2	535.287474	1068.5604	-1.8133	-0.00097063	-2.2152	-0.0011858	-4.0285	-0.0021564	535.2862573125623	53.892	1.2803	50.645	50.415	51.695	-3.2474					65	24	4	0	0	0	0.36941	1	3309	3309		94.006	0.86318	1	638320	+		39562	16476	32649	32673	42990	42990					0.028857429602794582
NEYMDHIV	8	Unmodified	_NEYMDHIV_					0	0	0		tr|A0A7D6W0X4|A0A7D6W0X4_9CLOTNADH-quinoneoxidoreductasesubunitNuoFOS=ClostridiumintestinaleOX=36845GN=HZF06_01040PE=3SV=1	tr|A0A7D6W0X4|A0A7D6W0X4_9CLOTNADH-quinoneoxidoreductasesubunitNuoFOS=ClostridiumintestinaleOX=36845GN=HZF06_01040PE=3SV=1	tr|A0A7D6W0X4|A0A7D6W0X4_9CLOTNADH-quinoneoxidoreductasesubunitNuoFOS=ClostridiumintestinaleOX=36845GN=HZF06_01040PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.7829284667969	2	510.726392	1019.43823	1.8924	0.00096652	3.9751	0.0020302	5.8676	0.0029967	510.72823435610985	87.274	0.49208	87.274	87.054	87.546	0					24	11	3	0	0	0	0.028476	1	9206	9206		33.516	0	1	1077000			39563	35390	32650	32674	42991	42991					-0.07071042113580006
NEYQKDIQIN	10	Unmodified	_NEYQKDIQIN_					0	0	0			REV__tr|A0A7D7AGR6|A0A7D7AGR6_9CLOTFlavinreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09740PE=3SV=1	REV__tr|A0A7D7AGR6|A0A7D7AGR6_9CLOTFlavinreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09740PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	631.8560180664062	2	632.812042	1263.60953	2.6012	0.0016461	-2.0202	-0.0012784	0.58093	0.00036762	632.8102466023685	99.698	0.57724	99.698	99.488	100.07	0					18	13	2	0	0	0	0.026867	1	11063	11063		28.081	0	1	483710	+		39564	32726	32651	32675	42992	42992					-0.0117301354139272
NEYTKDAGHR	10	Unmodified	_NEYTKDAGHR_					0	0	0		tr|A0A7D6VWY1|A0A7D6VWY1_9CLOTNUDIXhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05855PE=4SV=1	tr|A0A7D6VWY1|A0A7D6VWY1_9CLOTNUDIXhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05855PE=4SV=1	tr|A0A7D6VWY1|A0A7D6VWY1_9CLOTNUDIXhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05855PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.3065185546875	2	595.781076	1189.5476	-0.25356	-0.00015107	-1.026	-0.00061128	-1.2796	-0.00076234	595.780649854464	49.135	0.47857	49.135	48.851	49.33	0					22	10	3	0	0	0	0.026624	1	3647	3647		38.754	4.5811	1	476750			39565	35263	32652	32676	42993	42993					-0.0395932016988354
NEYVAQSKLVR	11	Unmodified	_NEYVAQSKLVR_					0	0	0			REV__SIN3B|p.E322A|1|0.05|ENSG00000127511|chr19:16854168-16854168|A/C|missense_variant	REV__SIN3B|p.E322A|1|0.05|ENSG00000127511|chr19:16854168-16854168|A/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.2414245605469	3	436.241976	1305.7041	0.22667	9.8884E-05	-2.5193	-0.001099	-2.2926	-0.0010001	436.24089196043764	21.376	1.5844	20.038	19.646	21.231	-1.3386					77	31	3	0	0	0	0.71338	1	188	188		25.068	1.6899	1	808510	+		39566	29363	32653	32677	42994	42994					0.06347545000562604
NFAGPSIFSI	10	Unmodified	_NFAGPSIFSI_					0	0	0			REV__ENSG00000172061|ENST00000347624|LRRC15	REV__ENSG00000172061|ENST00000347624|LRRC15	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.8028564453125	2	526.7742	1051.53385	0.058897	3.1025E-05	-0.70822	-0.00037307	-0.64932	-0.00034205	526.7761365337897	79.665	0.45262	77.97	77.819	78.271	-1.6951					12	8	3	0	0	0	0.026665	1	6723	6723		42.396	15.703	1	9413.6	+		39567	21671	32654	32678	42995	42995					0.010140540689462796
NFAKELEEL	9	Unmodified	_NFAKELEEL_					0	0	0			REV__ENSG00000164853|ENST00000316333|UNCX	REV__ENSG00000164853|ENST00000316333|UNCX	MULTI-MSMS	OvCa9_classI_Rep2	2	546.7809448242188	2	546.782222	1091.54989	-0.38383	-0.00020987	0.25892	0.00014157	-0.12491	-6.8297E-05	546.7822736350716	121.95	3.3566	121.74	121.33	124.69	-0.21033					164	67	4	0	0	0	0.12515	1	11859	11859		90.37	10.657	1	467550	+		39568	21026	32655	32679	42996	42996					0.007777155151870829
NFALAKLAL	9	Unmodified	_NFALAKLAL_					0	0	0			REV__ENST00000508784.5_1_4:146681933-146682710:-|nuORF	REV__ENST00000508784.5_1_4:146681933-146682710:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	480.7964782714844	2	480.797478	959.580402	-0.37436	-0.00017999	0.20674	9.9399E-05	-0.16763	-8.0595E-05	480.7973622689828	116.04	2.9694	115	114.65	117.62	-1.0414					124	59	3	0	0	0	0.53957	1	8670	8670		38.806	5.2906	1	286570	+		39569	26917	32656	32680	42997	42997					0.09899538690888221
NFARDFMVK	9	Unmodified	_NFARDFMVK_					0	0	0		PTPN12-RSBN1L|8|fusion	PTPN12-RSBN1L|8|fusion	PTPN12-RSBN1L|8|fusion	MULTI-SECPEP	OvCa9_classI_Rep3	3	564.8069458007812	2	564.286951	1126.55935	-0.84153	-0.00047486	-2.0417	-0.0011521	-2.8832	-0.001627	564.2857239169017	90.378	0.8717	88.298	87.901	88.773	-2.0805					27	16	2	0	0	0	0.027462	1	5642	5642		44.117	17.424	1	58263			39570	15529	32657	32681	42998	42998					0.0011320531971250603
NFDKILAEW	9	Unmodified	_NFDKILAEW_					0	0	0		MYH6|p.K1758Lfs*37|1|0.03|ENSG00000197616|chr14:23384933-23384934|-/TGAG|frameshift_variant;ENSG00000197616|ENST00000405093|MYH6;ENSG00000092054|ENST00000355349|MYH7;ENSG00000125414|ENST00000245503|MYH2;ENSG00000109061|ENST00000226207|MYH1	MYH6|p.K1758Lfs*37|1|0.03|ENSG00000197616|chr14:23384933-23384934|-/TGAG|frameshift_variant;ENSG00000125414|ENST00000245503|MYH2;ENSG00000109061|ENST00000226207|MYH1	MYH6|p.K1758Lfs*37|1|0.03|ENSG00000197616|chr14:23384933-23384934|-/TGAG|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	568.2954711914062	2	568.292756	1134.57096	0.84516	0.0004803	4.0489	0.002301	4.8941	0.0027813	568.2952088350829	151.8	0.61595	151.8	151.45	152.07	0					23	12	3	0	0	0	0.49652	1	17762	17762		42.864	0.46813	1	165470			39571	8730;3707;2691	32658	32682	42999	42999					0.009057256147116277
NFDNILNSFV	10	Unmodified	_NFDNILNSFV_					0	0	0		ENSG00000186815|ENST00000335509|TPCN1;nc|ENSG00000186815|Q9ULQ1-3|TPCN1;ENST00000551127.5_1_12:113726380-113729792:+|nuORF;ENST00000552077.5_1_12:113726380-113733878:+|nuORF	ENSG00000186815|ENST00000335509|TPCN1	ENSG00000186815|ENST00000335509|TPCN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	591.2996826171875	2	591.793121	1181.57169	0.30462	0.00018027	-2.0096	-0.0011893	-1.705	-0.001009	592.2937268283489	46.298	0.388	46.298	46.024	46.412	0					16	8	3	0	0	0	0.026714	1	3244	3244		42.864	0	1	141720			39572	8364	32659	32683	43000	43000					-0.011834797362325844
NFDVIIQIEN	10	Unmodified	_NFDVIIQIEN_					0	0	0		tr|A0A7D6ZGH3|A0A7D6ZGH3_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_18625PE=4SV=1	tr|A0A7D6ZGH3|A0A7D6ZGH3_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_18625PE=4SV=1	tr|A0A7D6ZGH3|A0A7D6ZGH3_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_18625PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	402.2115478515625	3	402.211794	1203.61355	0.55538	0.00022338	-3.7074	-0.0014911	-3.152	-0.0012678	402.2102561171988	50.053	0.82761	50.053	49.723	50.551	0					54	18	4	0	0	0	0.50873	1	3768	3768		65.278	0.12033	1	3207400			39573	35544	32660	32684	43001	43001					0.019890759523150336
NFETKMLTV	9	Unmodified	_NFETKMLTV_					0	0	0		LTR8_dup2971|chr17:8380695-8381392:+|1.1462445818792564|0.2447948664736123|2.23|429.0|22|3|sense	LTR8_dup2971|chr17:8380695-8381392:+|1.1462445818792564|0.2447948664736123|2.23|429.0|22|3|sense	LTR8_dup2971|chr17:8380695-8381392:+|1.1462445818792564|0.2447948664736123|2.23|429.0|22|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.289794921875	2	541.781167	1081.54778	2.4064	0.0013037	-3.5928	-0.0019465	-1.1864	-0.00064276	541.7792793773274	121.08	0.37056	121.08	120.87	121.25	0					13	8	2	0	0	0	0.027453	1	13911	13911		37.812	4.2959	1	303100			39574	14809	32661	32685	43002	43002					0.010269635057284177
NFFMVKEL	8	Unmodified	_NFFMVKEL_					0	0	0			REV__ENST00000463420.1_1_3:151488357-151501931:+|nuORF	REV__ENST00000463420.1_1_3:151488357-151501931:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.2681274414062	2	514.267696	1026.52084	0.042016	2.1607E-05	2.2645	0.0011646	2.3065	0.0011862	514.2687243356565	122.41	0.89293	121.05	120.81	121.7	-1.3666					36	17	3	0	0	0	0.66992	1	11565	11565		49.442	3.4896	1	80425	+		39575	26129	32662	32686	43003	43003					0.008638996852141645
NFFYKGQLT	9	Unmodified	_NFFYKGQLT_					0	0	0		ENSG00000037897|ENST00000324871|METTL1	ENSG00000037897|ENST00000324871|METTL1	ENSG00000037897|ENST00000324871|METTL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.78564453125	2	559.287474	1116.5604	2.0357	0.0011385	-2.9204	-0.0016333	-0.88467	-0.00049478	559.2857879153081	148.8	0.93147	148.8	148.18	149.11	0					30	18	3	0	0	0	0.027447	1	17432	17432		56.721	14.325	1	192900			39576	1092	32663	32687	43004	43004					0.0067774296028346726
NFHQHEVRF	9	Unmodified	_NFHQHEVRF_					0	0	0		nc|ENSG858|P60608|ERVFC1-1	nc|ENSG858|P60608|ERVFC1-1	nc|ENSG858|P60608|ERVFC1-1	MULTI-MSMS	OvCa99_classI_Rep5	1	607.2985229492188	2	607.296696	1212.57884	1.1733	0.00071255	3.6148	0.0021952	4.7881	0.0029078	607.2986564522918	154.08	0.68195	154.08	153.74	154.42	0					33	13	3	0	0	0	0.37135	1	18052	18052		54.776	1.4249	1	155270			39577	15412	32664	32688	43005	43005					-0.01894702345157384
NFHRVKDV	8	Unmodified	_NFHRVKDV_					0	0	0		ENST00000462119.5_1_6:111621047-111621194:-|nuORF	ENST00000462119.5_1_6:111621047-111621194:-|nuORF	ENST00000462119.5_1_6:111621047-111621194:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	507.7813720703125	2	507.777608	1013.54066	0.82669	0.00041978	-2.0637	-0.0010479	-1.237	-0.00062811	507.7765010156939	158.46	0.88771	158.46	158.05	158.94	0					39	18	3	0	0	0	0.72896	1	18562	18562		37.159	3.6435	1	152330			39578	12194	32665	32689	43006	43006					0.034434117401815456
NFIAPFGF	8	Unmodified	_NFIAPFGF_					0	0	0			REV__tr|A0A553SQY9|A0A553SQY9_NIACIDoxXfamilymembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_07500PE=4SV=1	REV__tr|A0A553SQY9|A0A553SQY9_NIACIDoxXfamilymembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_07500PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.2824401855469	2	456.734346	911.454139	2.4926	0.0011384	-4.4687	-0.002041	-1.9762	-0.00090258	456.7320357753877	95.89	0.55379	95.89	95.699	96.253	0					27	12	4	0	0	0	0.028476	1	10478	10478		46.766	0	1	699280	+		39579	30672	32666	32690	43007	43007					-0.005129678143816818
NFIKHILV	8	Unmodified	_NFIKHILV_					0	0	0		ENST00000397863.5_1_18:74725415-74725544:-|nuORF	ENST00000397863.5_1_18:74725415-74725544:-|nuORF	ENST00000397863.5_1_18:74725415-74725544:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.7922058105469	2	492.30547	982.596387	1.5095	0.00074314	0.22665	0.00011158	1.7362	0.00085472	492.3055100529719	129.81	0.65543	129.81	129.45	130.1	0					25	13	2	0	0	0	0.028476	1	15066	15066		33.516	0	1	66084			39580	11356	32667	32691	43008	43008					0.10439244927795244
NFIKHILV	8	Unmodified	_NFIKHILV_					0	0	0		ENST00000397863.5_1_18:74725415-74725544:-|nuORF	ENST00000397863.5_1_18:74725415-74725544:-|nuORF	ENST00000397863.5_1_18:74725415-74725544:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	492.30547	982.596387	1.5818	0.00077871	-1.1217	-0.00055223	0.46004	0.00022648	492.3048329023687	129.67	0.69041	129.44	129.22	129.91	-0.22696	-0.2906	0.00095094	NaN	42.474	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31383			39581	11356	32667	32691							0.10439244927795244
NFIKHILV	8	Unmodified	_NFIKHILV_					0	0	0		ENST00000397863.5_1_18:74725415-74725544:-|nuORF	ENST00000397863.5_1_18:74725415-74725544:-|nuORF	ENST00000397863.5_1_18:74725415-74725544:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	492.30547	982.596387	4.1352	0.0020358	-4.2206	-0.0020778	-0.085357	-4.2022E-05	492.3032735857102	131.42	0.81238	129.94	129.69	130.51	-1.478	0.21054	-0.0021002	NaN	42.474	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36430			39582	11356	32667	32691							0.10439244927795244
NFILTKMTK	9	Unmodified	_NFILTKMTK_					0	0	0		tr|A0A553SJJ2|A0A553SJJ2_NIACIHomoserinedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16790PE=3SV=1	tr|A0A553SJJ2|A0A553SJJ2_NIACIHomoserinedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16790PE=3SV=1	tr|A0A553SJJ2|A0A553SJJ2_NIACIHomoserinedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16790PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	548.3174438476562	2	548.315177	1094.6158	-0.84165	-0.00046149	3.7892	0.0020777	2.9475	0.0016162	548.3171569301378	74.411	2.3795	72	71.151	73.531	-2.4106					140	47	5	0	0	0	0.55011	1	3722	3722		37.812	3.639	1	1829400			39583	33510	32668	32692	43009	43009					0.07227833156366614
NFILVEKL	8	Unmodified	_NFILVEKL_					0	0	0			REV__tr|A0A7D6VS37|A0A7D6VS37_9CLOTPutativehemintransportsystempermeaseproteinHrtBOS=ClostridiumintestinaleOX=36845GN=HZF06_04150PE=3SV=1	REV__tr|A0A7D6VS37|A0A7D6VS37_9CLOTPutativehemintransportsystempermeaseproteinHrtBOS=ClostridiumintestinaleOX=36845GN=HZF06_04150PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	488.2989501953125	2	488.29731	974.580068	1.3918	0.00067961	0.89235	0.00043573	2.2841	0.0011153	488.2975717653619	138.3	1.9236	138.3	137.78	139.7	0					90	40	3	0	0	0	0.62474	1	16157	16157		58.782	5.4305	1	289030	+		39584	31466	32669	32693	43010	43010					0.0917611897103825
NFIPKTMDLS	10	Unmodified	_NFIPKTMDLS_					0	0	0		tr|A0A7D6ZRX0|A0A7D6ZRX0_9CLOTCysteinesynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05390PE=4SV=1	tr|A0A7D6ZRX0|A0A7D6ZRX0_9CLOTCysteinesynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05390PE=4SV=1	tr|A0A7D6ZRX0|A0A7D6ZRX0_9CLOTCysteinesynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05390PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.8263549804688	2	583.299724	1164.5849	1.5187	0.00088585	-2.4979	-0.0014571	-0.97926	-0.0005712	583.2981173175192	128.13	0.74846	128.13	127.81	128.56	0					26	15	4	0	0	0	0.026895	1	14878	14878		77.318	0	1	92965			39585	35725	32670	32694	43011	43011					0.009186350514937658
NFIQVIFIT	9	Unmodified	_NFIQVIFIT_					0	0	0		tr|A0A7D6W488|A0A7D6W488_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17835PE=4SV=1	tr|A0A7D6W488|A0A7D6W488_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17835PE=4SV=1	tr|A0A7D6W488|A0A7D6W488_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17835PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.3283081054688	2	547.815867	1093.61718	-1.2958	-0.00070988	-2.1781	-0.0011932	-3.4739	-0.0019031	547.8144207252936	95.712	1.1656	93.286	93.055	94.22	-2.4256					44	22	3	0	0	0	0.027462	1	8399	8399		55.504	19.886	1	214320			39586	35473	32671	32695	43012	43012					0.07411790516789551
NFIQVIFIT	9	Unmodified	_NFIQVIFIT_					0	0	0		tr|A0A7D6W488|A0A7D6W488_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17835PE=4SV=1	tr|A0A7D6W488|A0A7D6W488_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17835PE=4SV=1	tr|A0A7D6W488|A0A7D6W488_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17835PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	547.815867	1093.61718	-0.30786	-0.00016865	-3.5429	-0.0019409	-3.8508	-0.0021095	547.8137259040723	94.382	1.0384	93.283	93.01	94.049	-1.0995	0.0032493	-0.00077622	NaN	55.504	48	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166430			39587	35473	32671	32695							0.07411790516789551
NFIQVIFIT	9	Unmodified	_NFIQVIFIT_					0	0	0		tr|A0A7D6W488|A0A7D6W488_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17835PE=4SV=1	tr|A0A7D6W488|A0A7D6W488_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17835PE=4SV=1	tr|A0A7D6W488|A0A7D6W488_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17835PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	547.815867	1093.61718	-1.0818	-0.00059261	-2.5519	-0.001398	-3.6337	-0.0019906	547.8142409257415	95.165	1.1405	93.269	93.014	94.154	-1.8956	-0.0099744	0.00030958	NaN	55.504	52	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220190			39588	35473	32671	32695							0.07411790516789551
NFITLEEKL	9	Unmodified	_NFITLEEKL_					0	0	0		tr|A0A7D6VUF7|A0A7D6VUF7_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11540PE=4SV=1	tr|A0A7D6VUF7|A0A7D6VUF7_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11540PE=4SV=1	tr|A0A7D6VUF7|A0A7D6VUF7_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11540PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8063354492188	2	553.808239	1105.60193	-1.251	-0.00069283	0.89675	0.00049663	-0.35428	-0.0001962	553.8087118394574	119.62	1.3112	118.27	117.98	119.29	-1.3444					51	24	4	0	0	0	0.22035	1	11236	11236		72.879	4.0331	1	136640			39589	35184	32672	32696	43013	43013					0.05334878928942999
NFITLEEKL	9	Unmodified	_NFITLEEKL_					0	0	0		tr|A0A7D6VUF7|A0A7D6VUF7_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11540PE=4SV=1	tr|A0A7D6VUF7|A0A7D6VUF7_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11540PE=4SV=1	tr|A0A7D6VUF7|A0A7D6VUF7_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11540PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	553.808239	1105.60193	-0.76994	-0.0004264	0.89424	0.00049524	0.1243	6.8838E-05	553.8084663981205	118.5	0.99287	118.36	118.13	119.13	-0.14755	0.022155	0.00052664	NaN	72.879	42	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90004			39590	35184	32672	32696							0.05334878928942999
NFITLEEKL	9	Unmodified	_NFITLEEKL_					0	0	0		tr|A0A7D6VUF7|A0A7D6VUF7_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11540PE=4SV=1	tr|A0A7D6VUF7|A0A7D6VUF7_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11540PE=4SV=1	tr|A0A7D6VUF7|A0A7D6VUF7_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11540PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	553.808239	1105.60193	0.10449	5.7868E-05	-0.16919	-9.37E-05	-0.064701	-3.5832E-05	553.8079203077854	119.4	1.0866	118.37	118.13	119.22	-1.0271	0.039494	-0.00065124	NaN	72.879	43	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100930			39591	35184	32672	32696							0.05334878928942999
NFIVKFLY	8	Unmodified	_NFIVKFLY_					0	0	0		ENST00000394053.6_1_2:74442093-74442186:+|nuORF	ENST00000394053.6_1_2:74442093-74442186:+|nuORF	ENST00000394053.6_1_2:74442093-74442186:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.297607421875	2	522.299853	1042.58515	-0.82873	-0.00043285	-2.7978	-0.0014613	-3.6266	-0.0018942	522.2984725148816	117.18	0.99483	115.82	115.51	116.5	-1.3645					37	18	3	0	0	0	0.64377	1	10955	10955		54.765	4.7401	1	127400			39592	11257	32673	32697	43014	43014					0.06556422833659781
NFIVKFLY	8	Unmodified	_NFIVKFLY_					0	0	0		ENST00000394053.6_1_2:74442093-74442186:+|nuORF	ENST00000394053.6_1_2:74442093-74442186:+|nuORF	ENST00000394053.6_1_2:74442093-74442186:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	522.299853	1042.58515	-0.40564	-0.00021187	-3.3321	-0.0017403	-3.7377	-0.0019522	522.2985621856676	115.97	1.3856	115.85	115.39	116.78	-0.11777	-0.0026727	-0.00046738	NaN	54.765	40	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77983			39593	11257	32673	32697							0.06556422833659781
NFIVKFLY	8	Unmodified	_NFIVKFLY_					0	0	0		ENST00000394053.6_1_2:74442093-74442186:+|nuORF	ENST00000394053.6_1_2:74442093-74442186:+|nuORF	ENST00000394053.6_1_2:74442093-74442186:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	522.299853	1042.58515	-0.86717	-0.00045292	-2.6345	-0.001376	-3.5017	-0.0018289	522.2987920331716	116.92	1.1889	115.89	115.4	116.59	-1.0324	0.037348	0.00026127	NaN	54.765	36	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86390			39594	11257	32673	32697							0.06556422833659781
NFKGIFFRI	9	Unmodified	_NFKGIFFRI_					0	0	0		nc|ENSG00000166323|Q8NCR3-2|MFI	nc|ENSG00000166323|Q8NCR3-2|MFI	nc|ENSG00000166323|Q8NCR3-2|MFI	MULTI-MSMS	OvCa9_classI_Rep2	2	571.326904296875	2	571.329476	1140.6444	-2.0255	-0.0011572	-2.7619	-0.0015779	-4.7873	-0.0027351	571.3277455089909	140.97	0.79214	140.75	140.53	141.32	-0.22696					36	15	3	0	0	0	0.6653	1	14124	14124		24.203	1.1603	1	64933			39595	15155	32674	32698	43015	43015					0.07970318847833369
NFKIDITF	8	Unmodified	_NFKIDITF_					0	0	0			REV__tr|A0A7D6VQS5|A0A7D6VQS5_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23415PE=4SV=1	REV__tr|A0A7D6VQS5|A0A7D6VQS5_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23415PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	499.2721862792969	2	499.271293	996.528032	-0.72327	-0.00036111	0.40151	0.00020046	-0.32177	-0.00016065	499.271356214281	89.338	1.5163	87.207	86.846	88.362	-2.1309					90	29	4	0	0	0	0.68714	1	5522	5522		45.952	0	1	2067700	+		39596	31356	32675	32699	43016	43016					0.02962955557291025
NFKIGSLLGL	10	Unmodified	_NFKIGSLLGL_					0	0	0		nc|ENSG00000171495|Q7Z745-2|MROH2B;ENSG00000171495|ENST00000399564|MROH2B	nc|ENSG00000171495|Q7Z745-2|MROH2B	nc|ENSG00000171495|Q7Z745-2|MROH2B	MULTI-MSMS	OvCa99_classI_Rep5	1	531.3207397460938	2	531.321317	1060.62808	1.0114	0.00053736	-2.7531	-0.0014628	-1.7417	-0.00092541	531.319723609414	154.15	1.3373	154.15	153.78	155.12	0					82	26	4	0	0	0	0.6349	1	18081	18081		37.812	1.3648	1	933000			39597	7205	32676	32700	43017	43017					0.10019192891104467
NFKLVICPDE	10	Unmodified	_NFKLVICPDE_					0	0	0		ENST00000593801.1_1_19:59068052-59068513:-|nuORF;ENSG00000130725|ENST00000253023|UBE2M	ENST00000593801.1_1_19:59068052-59068513:-|nuORF	ENST00000593801.1_1_19:59068052-59068513:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	589.3048095703125	2	589.299724	1176.5849	0.87491	0.00051558	2.0496	0.0012078	2.9245	0.0017234	589.3000196615104	153.46	1.2254	153.46	152.9	154.12	0					57	24	4	0	0	0	0.6104	1	18001	18001		40.778	2.9666	1	263120			39598	4006	32677	32701	43018	43018					0.003666350515004524
NFKSIRSIT	9	Unmodified	_NFKSIRSIT_					0	0	0		PKD2L2|p.D217Efs*9|1|0.14|ENSG00000078795|chr5:137899639-137899649|TGACCTTCGAC/-|frameshift_variant;nc|ENSG00000078795|Q9NZM6-6|PKD2L2;nc|ENSG00000078795|Q9NZM6-2|PKD2L2;nc|ENSG00000078795|Q9NZM6-7|PKD2L2;nc|ENSG00000078795|Q9NZM6-5|PKD2L2;ENSG00000078795|ENST00000508883|PKD2L2	PKD2L2|p.D217Efs*9|1|0.14|ENSG00000078795|chr5:137899639-137899649|TGACCTTCGAC/-|frameshift_variant	PKD2L2|p.D217Efs*9|1|0.14|ENSG00000078795|chr5:137899639-137899649|TGACCTTCGAC/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	532.8056640625	2	533.306198	1064.59784	1.7386	0.0009272	4.268	0.0022761	6.0065	0.0032033	533.3083747029332	116.75	0.67096	116.75	116.37	117.04	0					25	13	2	0	0	0	0.37135	1	13343	13343		54.776	3.4409	1	470060			39599	1601	32678	32702	43019	43019					0.06812834225888764
NFLFEKEL	8	Unmodified	_NFLFEKEL_					0	0	0			REV__ENSG00000170689|ENST00000311177|HOXB9	REV__ENSG00000170689|ENST00000311177|HOXB9	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.3045654296875	2	520.276575	1038.5386	0.6405	0.00033324	0.27148	0.00014124	0.91198	0.00047448	520.2769852588843	155.6	0.46214	155.6	155.38	155.84	0					11	8	2	0	0	0	0.028476	1	18230	18230		30.504	17.544	1	93725	+		39600	21557	32679	32703	43020	43020					0.020869382117098212
NFLGIVTVP	9	Unmodified	_NFLGIVTVP_					0	0	0			REV__ENSG00000139055|ENST00000266397|ERP27	REV__ENSG00000139055|ENST00000266397|ERP27	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.292724609375	2	480.28166	958.548768	-0.36015	-0.00017297	-4.3845	-0.0021058	-4.7446	-0.0022788	480.2794122569244	91.437	1.0179	88.894	88.346	89.364	-2.5425					33	19	2	0	0	0	0.027462	1	7956	7956		35.618	0	1	63988	+		39601	19586	32680	32704	43021	43021					0.06783545936946211
NFLKESLLGI	10	Unmodified	_NFLKESLLGI_					0	0	0			REV__tr|A0A7D6ZGY8|A0A7D6ZGY8_9CLOTMetal-dependentcarboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00665PE=3SV=1	REV__tr|A0A7D6ZGY8|A0A7D6ZGY8_9CLOTMetal-dependentcarboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00665PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3284912109375	2	567.331882	1132.64921	-2.6412	-0.0014984	-1.2123	-0.00068778	-3.8535	-0.0021862	567.3310908608092	141.92	3.9983	140.91	138.91	142.91	-1.0106					224	80	5	0	0	0	0.62299	1	11709	11709		39.253	12.56	1	127690	+		39602	32012	32681	32705	43022	43022					0.0881915819995811
NFLKGLAVQY	10	Unmodified	_NFLKGLAVQY_					0	0	0		tr|A0A553SNP5|A0A553SNP5_NIACIDUF1456familyproteinOS=NialliacirculansOX=1397GN=CEQ21_24890PE=4SV=1	tr|A0A553SNP5|A0A553SNP5_NIACIDUF1456familyproteinOS=NialliacirculansOX=1397GN=CEQ21_24890PE=4SV=1	tr|A0A553SNP5|A0A553SNP5_NIACIDUF1456familyproteinOS=NialliacirculansOX=1397GN=CEQ21_24890PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	577.3624267578125	2	576.824224	1151.63389	-0.5853	-0.00033761	1.2839	0.00074059	0.69861	0.00040297	576.8245414748109	114.32	0.49298	114.2	113.91	114.4	-0.11777					15	9	2	0	0	0	0.027088	1	10843	10843		34.173	3.6689	1	13771			39603	33944	32682	32706	43023	43023					0.06414291402757044
NFLKVTIPP	9	Unmodified	_NFLKVTIPP_					0	0	0		ENSG00000219626|ENST00000615575|FAM228B	ENSG00000219626|ENST00000615575|FAM228B	ENSG00000219626|ENST00000615575|FAM228B	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.8323364257812	2	514.810585	1027.60662	1.9507	0.0010043	-3.5355	-0.0018201	-1.5848	-0.00081586	514.8084909340944	110.47	0.85283	110.47	109.95	110.8	0					29	18	2	0	0	0	0.027448	1	12505	12505		53.351	22.848	1	432360			39604	9223	32683	32707	43024	43024					0.09391807862357382
NFLLGVIALT	10	Unmodified	_NFLLGVIALT_					0	0	0			REV__SLC9C1|p.L277F|1|0.22|ENSG00000172139|chr3:112266285-112266285|T/G|missense_variant	REV__SLC9C1|p.L277F|1|0.22|ENSG00000172139|chr3:112266285-112266285|T/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.3328857421875	2	530.823692	1059.63283	1.1126	0.0005906	-0.28109	-0.00014921	0.83152	0.00044139	530.8235397713008	155.16	0.54883	155.16	154.93	155.48	0					15	10	2	0	0	0	0.027021	1	18172	18172		29.15	0	1	72476	+		39605	29374	32684	32708	43025	43025					0.10540077033851958
NFLLSLIFL	9	Unmodified	_NFLLSLIFL_					0	0	0		L1MCa_dup1455|chr3:161109768-161111719:+|1.3579652635712427|0.3175433071941228|2.1|429.0|76|1|anti-sense	L1MCa_dup1455|chr3:161109768-161111719:+|1.3579652635712427|0.3175433071941228|2.1|429.0|76|1|anti-sense	L1MCa_dup1455|chr3:161109768-161111719:+|1.3579652635712427|0.3175433071941228|2.1|429.0|76|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3300170898438	2	540.328611	1078.64267	-1.2676	-0.00068491	4.0333	0.0021793	2.7657	0.0014944	540.3307152267141	139.22	4.0818	138.16	137	141.08	-1.0595					200	82	3	0	0	0	0.65476	1	11378	11378		25.45	0	1	55828			39606	14612	32685	32709	43026	43026					0.1064926503922834
NFLPHILDL	9	Unmodified	_NFLPHILDL_					0	0	0			REV__ENST00000590993.1_1_19:36883752-36884112:-|nuORF	REV__ENST00000590993.1_1_19:36883752-36884112:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	541.303955078125	2	541.305667	1080.59678	0.54127	0.00029299	-3.4045	-0.0018429	-2.8632	-0.0015499	541.3035987536223	74.184	1.2202	74.184	73.907	75.128	0					70	30	4	0	0	0	0.29717	1	7310	7310		63.306	13.77	1	10566000	+		39607	27923	32686	32710	43027	43027					0.059706198569983826
NFLSRRLFLL	10	Unmodified	_NFLSRRLFLL_					0	0	0		ENST00000477216.1_1_3:170077526-170077565:+|nuORF	ENST00000477216.1_1_3:170077526-170077565:+|nuORF	ENST00000477216.1_1_3:170077526-170077565:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	427.2538757324219	3	426.927552	1277.76083	0.3132	0.00013371	2.8689	0.0012248	3.1821	0.0013585	426.92848667183466	39.263	0.69554	36.337	35.997	36.693	-2.9264					13	13	2	0	0	0	0.027001	1	1562	1562		28.081	8.8188	1	12111			39608	12476	32687	32711	43028	43028					0.13305637347752963
NFLVEKIR	8	Unmodified	_NFLVEKIR_					0	0	0			REV__ENSG00000176142|ENST00000319172|TMEM39A	REV__ENSG00000176142|ENST00000319172|TMEM39A	MULTI-MSMS	OvCa9_classI_Rep2	2	509.80328369140625	2	509.805834	1017.59712	-0.41042	-0.00020923	-3.6368	-0.0018541	-4.0473	-0.0020633	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.75915	1	13559	13559		20.482	3.1169	1	150140	+		39609	21932	32688	32712	43029	43029					0.08902039576832976
NFMYMDFFP	9	Unmodified	_NFMYMDFFP_					0	0	0			REV__tr|A0A553SLR9|A0A553SLR9_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_21145PE=4SV=1	REV__tr|A0A553SLR9|A0A553SLR9_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_21145PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	605.8251953125	2	606.248646	1210.48274	2.5876	0.0015687	-0.6745	-0.00040891	1.9131	0.0011598	606.2481208736012	90.44	0.30482	90.44	90.31	90.615	0					10	7	2	0	0	0	0.027462	1	9712	9712		31.955	0	1	238060	+		39610	30259	32689	32713	43030	43030					-0.1140835429175695
NFNAATKDLQ	10	Unmodified	_NFNAATKDLQ_					0	0	0			REV__ENST00000392370.7_1_2:188252095-188252167:-|nuORF	REV__ENST00000392370.7_1_2:188252095-188252167:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	561.288330078125	2	561.28292	1120.55129	1.1408	0.00064033	1.2757	0.00071605	2.4166	0.0013564	561.2835571910474	160.84	0.80464	160.84	160.4	161.21	0					31	15	3	0	0	0	0.59317	1	18866	18866		42.864	3.6114	1	117140	+		39611	25257	32690	32714	43031	43031					-0.004166503960732371
NFPEGDHNI	9	Unmodified	_NFPEGDHNI_					0	0	0		SRPX|p.K236N|1|0.08|ENSG00000101955|chrX:38161000-38161000|C/A|missense_variant	SRPX|p.K236N|1|0.08|ENSG00000101955|chrX:38161000-38161000|C/A|missense_variant	SRPX|p.K236N|1|0.08|ENSG00000101955|chrX:38161000-38161000|C/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.3193359375	2	521.733063	1041.45157	-0.080059	-4.1769E-05	3.2252	0.0016827	3.1451	0.0016409	521.7343805971186	60.501	0.54635	57.071	56.799	57.345	-3.43					14	10	2	0	0	0	0.027462	1	4097	4097		23.523	2.5758	1	17038			39612	32921	32691	32715	43032	43032					-0.06749468010002602
NFPRPVGM	8	Unmodified	_NFPRPVGM_					0	0	0			REV__L1MB3_dup1513|chr1:246270299-246273131:-|1.1805691521590191|0.3959605958472513|1.58|429.0|20|1|sense	REV__L1MB3_dup1513|chr1:246270299-246273131:-|1.1805691521590191|0.3959605958472513|1.58|429.0|20|1|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	458.5896301269531	2	459.23673	916.458907	-0.66773	-0.00030665	3.1628	0.0014525	2.495	0.0011458	459.23819509945343	54.014	0.84718	51.2	50.925	51.772	-2.8139					23	16	2	0	0	0	0.028476	1	3696	3696		35.201	12.158	1	27212	+		39613	28415	32692	32716	43033	43033					-0.0026640694326260927
NFQEKYVN	8	Unmodified	_NFQEKYVN_					0	0	0		ENST00000368654.7_1_10:129914037-129921160:-|nuORF;ENST00000478293.1_1_10:129914037-129924496:-|nuORF	ENST00000368654.7_1_10:129914037-129921160:-|nuORF	ENST00000368654.7_1_10:129914037-129921160:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.3121337890625	2	521.253631	1040.49271	1.8955	0.00098804	0.40456	0.00021088	2.3001	0.0011989	521.2536924008281	80.525	0.67654	80.525	80.234	80.91	0					39	15	4	0	0	0	0.028476	1	8315	8315		42.396	9.5837	1	1279600			39614	10880	32693	32717	43034	43034					-0.025917069705201357
NFQEKYVN	8	Unmodified	_NFQEKYVN_					0	0	0		ENST00000368654.7_1_10:129914037-129921160:-|nuORF;ENST00000478293.1_1_10:129914037-129924496:-|nuORF	ENST00000368654.7_1_10:129914037-129921160:-|nuORF	ENST00000368654.7_1_10:129914037-129921160:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	521.253631	1040.49271	-0.28987	-0.0001511	3.8819	0.0020234	3.592	0.0018723	521.2556476640804	83.526	0.5351	80.863	80.779	81.314	-2.6629	0.16922	0.0031256	NaN	42.396	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15541			39615	10880	32693	32717							-0.025917069705201357
NFRFTKKV	8	Unmodified	_NFRFTKKV_					0	0	0			REV__tr|A0A7D6VRE4|A0A7D6VRE4_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01310PE=4SV=1	REV__tr|A0A7D6VRE4|A0A7D6VRE4_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01310PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.3045654296875	2	520.306001	1038.59745	-4.1402	-0.0021542	2.6837	0.0013964	-1.4565	-0.00075783	520.3072815468703	153.07	1.2181	151.63	151.24	152.46	-1.4351					76	30	4	0	0	0	0.74754	1	15179	15179		27.882	1.1893	1	318110	+		39616	31408	32694	32718	43035	43035					0.07969459296691639
NFRGRRYK	8	Unmodified	_NFRGRRYK_					0	0	0		ENSG00000176407|ENST00000409785|KCMF1	ENSG00000176407|ENST00000409785|KCMF1	ENSG00000176407|ENST00000409785|KCMF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7518310546875	2	548.809774	1095.60499	1.407	0.00077217	2.3592	0.0012948	3.7662	0.0020669	548.8108854604142	103.14	0.49486	103.14	102.89	103.39	0					20	11	2	0	0	0	0.028476	1	11552	11552		31.955	0	1	394260			39617	7605	32695	32719	43036	43036					0.06101611616986702
NFRPKSLIN	9	Unmodified	_NFRPKSLIN_					0	0	0		L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|124|3|sense	L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|124|3|sense	L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|124|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.8289184570312	2	544.81419	1087.61383	3.4958	0.0019046	-2.2905	-0.0012479	1.2054	0.0006567	544.8129224710927	88.143	0.5462	88.143	87.838	88.384	0					28	12	3	0	0	0	0.027453	1	9332	9332		45.972	11.8	1	875730			39618	14754	32696	32720	43037	43037					0.07352540462807156
NFRQGVKPV	9	Unmodified	_NFRQGVKPV_					0	0	0			REV__ENSG00000155252|ENST00000370631|PI4K2A	REV__ENSG00000155252|ENST00000370631|PI4K2A	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.2742309570312	2	522.801083	1043.58761	-0.41458	-0.00021674	3.9623	0.0020715	3.5477	0.0018547	522.8053347397105	65.13	0.15833	65.13	65.072	65.231	0					5	3	2	0	0	0	0.027462	1	5960	5960		30.504	3.7075	1	132180	+		39619	20418	32697	32721	43038	43038					0.0675627129132863
NFRREILK	8	Unmodified	_NFRREILK_					0	0	0			REV__tr|A0A7D7ABD8|A0A7D7ABD8_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_14955PE=3SV=1	REV__tr|A0A7D7ABD8|A0A7D7ABD8_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_14955PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	538.3032836914062	2	538.322183	1074.62981	0.9974	0.00053692	-0.25629	-0.00013796	0.74111	0.00039896	538.3215756347963	89.242	0.19724	87.874	87.774	87.971	-1.3676					5	3	2	0	0	0	0.028476	1	7857	7857		82.241	7.9855	1	3450.3	+		39620	32677	32698	32722	43039	43039					0.09548246699705487
NFSAKLRYYK	10	Unmodified	_NFSAKLRYYK_					0	0	0			REV__tr|A0A7D6VWI1|A0A7D6VWI1_9CLOTMurR/RpiRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_04165PE=4SV=1	REV__tr|A0A7D6VWI1|A0A7D6VWI1_9CLOTMurR/RpiRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_04165PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	431.5669860839844	3	430.571545	1288.69281	-0.58577	-0.00025222	-2.2996	-0.00099015	-2.8854	-0.0012424	430.5706401824685	73.296	1.0972	70.896	70.272	71.369	-2.3999					42	20	3	0	0	0	0.027142	1	5891	5891		10.587	0	1	95948	+		39621	31748	32699	32723	43040	43040					0.06000767697082665
NFSFLLAGTI	10	Unmodified	_NFSFLLAGTI_					0	0	0		tr|A0A553SFH5|A0A553SFH5_NIACIDoxXfamilymembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_08875PE=4SV=1	tr|A0A553SFH5|A0A553SFH5_NIACIDoxXfamilymembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_08875PE=4SV=1	tr|A0A553SFH5|A0A553SFH5_NIACIDoxXfamilymembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_08875PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.3456420898438	2	541.797675	1081.5808	-0.18639	-0.00010099	-3.7964	-0.0020569	-3.9828	-0.0021579	541.795568938686	81.239	1.1182	79.59	79.164	80.282	-1.6485					56	21	4	0	0	0	0.026606	1	6946	6946		62.107	1.9892	1	286890			39622	33039	32700	32724	43041	43041					0.043269136200933644
NFTLFIKNS	9	Unmodified	_NFTLFIKNS_					0	0	0		ENST00000572418.1_1_17:3801110-3806945:-|nuORF;ENSG00000108405|ENST00000225538|P2RX1	ENST00000572418.1_1_17:3801110-3806945:-|nuORF	ENST00000572418.1_1_17:3801110-3806945:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.2693481445312	2	542.295299	1082.57605	-1.7177	-0.00093151	3.1537	0.0017102	1.436	0.00077873	542.7984619767948	73.292	0.67725	69.896	69.543	70.22	-3.3961					19	13	2	0	0	0	0.027462	1	5633	5633		37.812	0	1	34723			39623	2652	32701	32725	43042	43042					0.038060294773458736
NFTLMEVPT	9	Oxidation (M)	_NFTLM(Oxidation (M))EVPT_		NFTLM(1)EVPT		NFTLM(64)EVPT	0	0	1			REV__chr12:57748617-57750923|134|40.19|0.59|6.08|-|0|CDK4,CDK4|1	REV__chr12:57748617-57750923|134|40.19|0.59|6.08|-|0|CDK4,CDK4|1	MULTI-MSMS	OvCa9_classI_Rep2	2	534.2578735351562	2	534.257525	1066.5005	-0.87643	-0.00046824	3.8611	0.0020628	2.9847	0.0015946	534.2594436353716	107.28	2.2603	106.97	106.37	108.63	-0.30836					108	45	3	0	0	0	0.28934	1	10032	10032		64.207	8.7031	1	322070	+		39624	15885	32702	32726	43043	43043		385			-0.030093157652800073
NFTNVAATF	9	Unmodified	_NFTNVAATF_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;ENST00000588547.1_1_17:40060903-40061877:-|nuORF	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	OvCa99_classI_Rep5	1	492.74462890625	2	492.742899	983.471246	2.0542	0.0010122	-0.059221	-2.9181E-05	1.9949	0.00098299	492.74261025250814	113.1	0.40965	113.1	112.88	113.29	0					18	8	3	0	0	0	0.1944	1	12889	12889		77.318	22.553	1	147730			39625	4070	32703	32727	43044	43044					-0.02115091999246488
NFTPLDDDI	9	Unmodified	_NFTPLDDDI_					0	0	0			REV__ENSG00000166828|ENST00000300061|SCNN1G	REV__ENSG00000166828|ENST00000300061|SCNN1G	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.2491455078125	2	525.242929	1048.47131	-0.57498	-0.000302	4.3379	0.0022784	3.7629	0.0019764	525.2451582187714	116.42	0.76601	115.05	114.8	115.56	-1.3645					23	14	3	0	0	0	0.46356	1	10866	10866		45.972	1.4412	1	40248	+		39626	21224	32704	32728	43045	43045					-0.05099136789908698
NFTPLDDDI	9	Unmodified	_NFTPLDDDI_					0	0	0			REV__ENSG00000166828|ENST00000300061|SCNN1G	REV__ENSG00000166828|ENST00000300061|SCNN1G	MULTI-MATCH	OvCa99_classI_Rep5	1		2	525.242929	1048.47131	1.7035	0.00089478	-0.2224	-0.00011681	1.4812	0.00077796	525.2428057151551	115.47	0.42529	115.47	115.35	115.77	0	0.2974	-0.0039067	NaN	45.972	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111980	+		39627	21224	32704	32728							-0.05099136789908698
NFTPLDDDI	9	Unmodified	_NFTPLDDDI_					0	0	0			REV__ENSG00000166828|ENST00000300061|SCNN1G	REV__ENSG00000166828|ENST00000300061|SCNN1G	MULTI-MATCH	OvCa9_classI_Rep2	2		2	525.242929	1048.47131	-0.47417	-0.00024905	4.7234	0.0024809	4.2492	0.0022319	525.2454636712432	115.24	0.78954	115.12	114.9	115.69	-0.11777	-0.049362	0.0012888	NaN	45.972	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24211	+		39628	21224	32704	32728							-0.05099136789908698
NFTPLDDDI	9	Unmodified	_NFTPLDDDI_					0	0	0			REV__ENSG00000166828|ENST00000300061|SCNN1G	REV__ENSG00000166828|ENST00000300061|SCNN1G	MULTI-MATCH	OvCa9_classI_Rep3	3		2	525.242929	1048.47131	-1.0253	-0.00053852	4.7624	0.0025014	3.7371	0.0019629	525.245501718701	116.08	0.78974	115.04	114.85	115.64	-1.0414	-0.13366	0.0013298	NaN	45.972	23	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22286	+		39629	21224	32704	32728							-0.05099136789908698
NFTPLDDDI	9	Unmodified	_NFTPLDDDI_					0	0	0			REV__ENSG00000166828|ENST00000300061|SCNN1G	REV__ENSG00000166828|ENST00000300061|SCNN1G	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	525.242929	1048.47131	-0.57498	-0.000302	4.3379	0.0022784	3.7629	0.0019764	525.2451582187714	116.42	0.76601	115.05	114.8	115.56	-1.3645	-0.11438	0.00088383	NaN	45.972	23	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40248	+		39630	21224	32704	32728							-0.05099136789908698
NFTRILHSL	9	Unmodified	_NFTRILHSL_					0	0	0		GABRA4|p.D53H|1|0.26|ENSG00000109158|chr4:46992876-46992876|C/G|missense_variant	GABRA4|p.D53H|1|0.26|ENSG00000109158|chr4:46992876-46992876|C/G|missense_variant	GABRA4|p.D53H|1|0.26|ENSG00000109158|chr4:46992876-46992876|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.31884765625	2	550.81419	1099.61383	2.7827	0.0015327	0.31144	0.00017155	3.0941	0.0017043	551.3167561326678	135.26	0.64354	133.72	133.36	134.01	-1.5437					34	12	4	0	0	0	0.53483	1	13101	13101		39.253	0	1	40491			39631	14337	32705	32729	43046	43046					0.06800540462813842
NFTYYEEKL	9	Unmodified	_NFTYYEEKL_					0	0	0		L1ME4a_dup15683|chr7:135159667-135159953:+|1.2796223879496305|0.4304620133998951|1.57|429.0|2|1|sense	L1ME4a_dup15683|chr7:135159667-135159953:+|1.2796223879496305|0.4304620133998951|1.57|429.0|2|1|sense	L1ME4a_dup15683|chr7:135159667-135159953:+|1.2796223879496305|0.4304620133998951|1.57|429.0|2|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.23138427734375	3	402.860761	1205.56045	1.186	0.00047777	0.16885	6.8024E-05	1.3548	0.0005458	402.8606050496065	33.13	2.1207	33.13	32.651	34.772	0					65	43	3	0	0	0	0.027425	1	1458	1458		60.118	7.1816	1	96855			39632	14623	32706	32730	43047	43047					-0.034103018303767385
NFVARSGGDEF	11	Unmodified	_NFVARSGGDEF_					0	0	0		tr|A0A7D6VNU3|A0A7D6VNU3_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14045PE=4SV=1	tr|A0A7D6VNU3|A0A7D6VNU3_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14045PE=4SV=1	tr|A0A7D6VNU3|A0A7D6VNU3_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14045PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.7885131835938	2	599.778002	1197.54145	2.1909	0.001314	3.3439	0.0020056	5.5348	0.0033196	600.2822526422867	110.35	0.1793	110.35	110.27	110.45	0					5	3	2	0	0	0	0.025638	1	12532	12532		37.812	0	1	182460			39633	34726	32707	32731	43048	43048					-0.049418384014416006
NFVAWFVL	8	Unmodified	_NFVAWFVL_					0	0	0			REV__ENST00000378536.4_1_1:2240819-2241002:+|nuORF	REV__ENST00000378536.4_1_1:2240819-2241002:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.7892761230469	2	498.271096	994.527639	-0.94936	-0.00047304	-3.0784	-0.0015339	-4.0278	-0.0020069	498.2692518541136	116.72	0.89046	115.68	115.24	116.13	-1.0414					20	17	2	0	0	0	0.028476	1	8724	8724		44.531	0.41427	1	9999.3	+		39634	25143	32708	32732	43049	43049					0.030155806280845354
NFVELLFFVL	10	Unmodified	_NFVELLFFVL_					0	0	0			REV__ENST00000578002.1_1_17:72950488-72952031:-|nuORF	REV__ENST00000578002.1_1_17:72950488-72952031:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	620.87890625	2	620.85245	1239.69035	0.80898	0.00050226	-1.4741	-0.00091521	-0.66514	-0.00041295	620.8510995085127	155.78	0.91609	155.78	155.53	156.45	0					26	17	2	0	0	0	0.02676	1	18269	18269		29.15	0	1	37924	+		39635	21312	32709	32733	43050	43050					0.08008919239409806
NFVHGNHV	8	Unmodified	_NFVHGNHV_					0	0	0			REV__JARID2|p.F790Lfs*33|1|0.15|ENSG00000008083|chr6:15501331-15501331|C/-|frameshift_variant	REV__JARID2|p.F790Lfs*33|1|0.15|ENSG00000008083|chr6:15501331-15501331|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.2266845703125	2	462.227751	922.440949	0.30189	0.00013954	-3.4261	-0.0015836	-3.1242	-0.0014441	462.2261682280489	140.61	1.0811	139.11	138.81	139.89	-1.4952					45	20	3	0	0	0	0.72922	1	13748	13748		37.028	5.0736	1	115030	+		39636	16443	32710	32734	43051	43051					-0.023374058737658743
NFVHGNHV	8	Unmodified	_NFVHGNHV_					0	0	0			REV__JARID2|p.F790Lfs*33|1|0.15|ENSG00000008083|chr6:15501331-15501331|C/-|frameshift_variant	REV__JARID2|p.F790Lfs*33|1|0.15|ENSG00000008083|chr6:15501331-15501331|C/-|frameshift_variant	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	462.227751	922.440949	-1.0681	-0.00049369	-1.9874	-0.00091863	-3.0555	-0.0014123	462.226737916713	139.41	0.78778	139.18	138.96	139.75	-0.22696	0.046358	0.00033835	NaN	37.028	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38510	+		39637	16443	32710	32734							-0.023374058737658743
NFVHGNHV	8	Unmodified	_NFVHGNHV_					0	0	0			REV__JARID2|p.F790Lfs*33|1|0.15|ENSG00000008083|chr6:15501331-15501331|C/-|frameshift_variant	REV__JARID2|p.F790Lfs*33|1|0.15|ENSG00000008083|chr6:15501331-15501331|C/-|frameshift_variant	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	462.227751	922.440949	-2.0879	-0.0009651	-0.43764	-0.00020229	-2.5256	-0.0011674	462.2276154833383	140.15	0.73911	139.11	138.89	139.63	-1.0339	-0.023031	0.001771	NaN	37.028	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50719	+		39638	16443	32710	32734							-0.023374058737658743
NFVINVREI	9	Unmodified	_NFVINVREI_					0	0	0			REV__ENST00000588692.5_1_19:14519750-14520718:-|nuORF	REV__ENST00000588692.5_1_19:14519750-14520718:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.7817993164062	2	552.314023	1102.61349	-1.3611	-0.00075174	0.97116	0.00053639	-0.38991	-0.00021536	552.3142914004532	70.139	0.32612	70.139	69.883	70.21	0					10	7	2	0	0	0	0.027411	1	6718	6718		74.255	4.6274	1	132190	+		39639	18627	32711	32735	43052	43052					0.06629120742968553
NFVINVREI	9	Unmodified	_NFVINVREI_					0	0	0			REV__ENST00000588692.5_1_19:14519750-14520718:-|nuORF	REV__ENST00000588692.5_1_19:14519750-14520718:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	552.314023	1102.61349	-0.29619	-0.00016359	-1.304	-0.00072021	-1.6002	-0.0008838	552.3145172516487	72.411	0.2485	69.809	69.67	69.919	-2.6023	-0.16526	-0.00029716	NaN	74.255	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12330	+		39640	18627	32711	32735							0.06629120742968553
NFVNFRYL	8	Unmodified	_NFVNFRYL_					0	0	0		nc|ENSG00000140750|Q68EM7-3|ARHGAP17;ARHGAP17|p.S762Qfs*22|1|0.08|ENSG00000140750|chr16:24931015-24931016|-/G|frameshift_variant;nc|ENSG00000140750|Q68EM7-2|ARHGAP17;nc|ENSG00000140750|Q68EM7-6|ARHGAP17;nc|ENSG00000140750|Q68EM7-5|ARHGAP17;ENSG00000140750|ENST00000289968|ARHGAP17	nc|ENSG00000140750|Q68EM7-3|ARHGAP17	nc|ENSG00000140750|Q68EM7-3|ARHGAP17	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.2462158203125	2	536.782359	1071.55016	-0.52016	-0.00027921	3.7211	0.0019974	3.2009	0.0017182	536.784822699184	115.39	1.3493	113.99	113.46	114.81	-1.3977					43	26	3	0	0	0	0.028476	1	10683	10683		68.485	0	1	52600			39641	106	32712	32736	43053	43053					0.017251800257099603
NFWRREELSLF	11	Unmodified	_NFWRREELSLF_					0	0	0		ENSG00000204740|ENST00000454679|MALRD1	ENSG00000204740|ENST00000454679|MALRD1	ENSG00000204740|ENST00000454679|MALRD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.7358093261719	3	499.593009	1495.7572	2.2227	0.0011105	3.892	0.0019444	6.1147	0.0030549	499.59467314629916	76.19	0.40905	76.19	75.996	76.405	0					16	9	3	0	0	0	0.026321	1	7612	7612		14.694	2.2608	1	327850			39642	9027	32713	32737	43054	43054					0.029149227832476754
NFYDELGPS	9	Unmodified	_NFYDELGPS_					0	0	0			REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.7920532226562	2	521.229822	1040.44509	0.24206	0.00012617	3.0948	0.0016131	3.3369	0.0017393	521.2312111440064	96.518	0.79805	94.092	93.913	94.711	-2.4256					26	15	3	0	0	0	0.027459	1	8584	8584		62.107	30.578	1	58439	+		39643	21744	32714	32738	43055	43055					-0.07351405961389901
NFYDELGPS	9	Unmodified	_NFYDELGPS_					0	0	0			REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4	REV__nc|ENSG00000173064|Q9Y4D8-4|HECTD4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	521.229822	1040.44509	-0.69931	-0.0003645	3.3648	0.0017538	2.6655	0.0013893	521.2314259649467	95.831	0.7906	94.002	93.731	94.521	-1.8286	-0.045011	0.0001233	NaN	62.107	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69326	+		39644	21744	32714	32738							-0.07351405961389901
NFYLIVGLG	9	Unmodified	_NFYLIVGLG_					0	0	0			REV__tr|A0A553SLE7|A0A553SLE7_NIACIReversetranscriptase-likeproteinOS=NialliacirculansOX=1397GN=CEQ21_20360PE=4SV=1	REV__tr|A0A553SLE7|A0A553SLE7_NIACIReversetranscriptase-likeproteinOS=NialliacirculansOX=1397GN=CEQ21_20360PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.3133239746094	2	498.28166	994.548768	2.0645	0.0010287	-3.5446	-0.0017662	-1.4802	-0.00073755	498.27975531864786	85.952	0.52134	85.952	85.75	86.271	0					23	12	3	0	0	0	0.027462	1	9013	9013		25.45	0	1	617370	+		39645	30218	32715	32739	43056	43056					0.05127545936966271
NGADVIIK	8	Unmodified	_NGADVIIK_					0	0	0			REV__tr|A0A7D6ZHZ0|A0A7D6ZHZ0_9CLOTPhosphomannomutase/phosphoglucomutaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01665PE=3SV=1	REV__tr|A0A7D6ZHZ0|A0A7D6ZHZ0_9CLOTPhosphomannomutase/phosphoglucomutaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01665PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	414.5556640625	2	415.242535	828.470518	-0.29962	-0.00012442	0.88299	0.00036665	0.58336	0.00024224	415.2428635427749	55.623	0.64374	52.819	52.532	53.175	-2.804					22	12	2	0	0	0	0.028476	1	3859	3859		10.866	0	1	31010	+		39646	31882	32716	32740	43057	43057					0.04942113351705757
NGAKSKGMFYH	11	Unmodified	_NGAKSKGMFYH_					0	0	0			REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	REV__nc|ENSG00000121210|A2VDJ0-2|TMEM131L	MULTI-SECPEP	OvCa99_classI_Rep5	1	413.219970703125	3	413.869485	1238.58663	0.75436	0.00031221	3.3648	0.0013926	4.1192	0.0017048	413.87107210611026	30.623	1.2731	30.623	30.236	31.509	0					35	25	2	0	0	0	0.025909	1	1148	1148		23.378	20.844	1	377040	+		39647	18532	32717	32741	43058	43058					-0.02312311139871781
NGAPRLEPPPG	11	Unmodified	_NGAPRLEPPPG_					0	0	0		ENST00000494689.5_1_1:233086425-233113974:+|nuORF	ENST00000494689.5_1_1:233086425-233113974:+|nuORF	ENST00000494689.5_1_1:233086425-233113974:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	552.7921142578125	2	552.793455	1103.57236	0.19007	0.00010507	-3.4687	-0.0019175	-3.2786	-0.0018124	552.7913714813307	32.661	0.93928	29.951	29.53	30.47	-2.7097					27	18	2	0	0	0	0.70761	1	1104	1104		27.047	0.25122	1	51821			39648	12761	32718	32742	43059	43059					0.024713597034633494
NGAWKPVL	8	Unmodified	_NGAWKPVL_					0	0	0		tr|A0A553SSM0|A0A553SSM0_NIACINitratereductasesubunitalphaOS=NialliacirculansOX=1397GN=CEQ21_03345PE=3SV=1	tr|A0A553SSM0|A0A553SSM0_NIACINitratereductasesubunitalphaOS=NialliacirculansOX=1397GN=CEQ21_03345PE=3SV=1	tr|A0A553SSM0|A0A553SSM0_NIACINitratereductasesubunitalphaOS=NialliacirculansOX=1397GN=CEQ21_03345PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.2666931152344	2	442.75307	883.491587	-0.63081	-0.00027929	-3.4442	-0.0015249	-4.075	-0.0018042	442.7510676317346	63.124	0.43562	59.649	59.48	59.916	-3.475					14	8	2	0	0	0	0.028476	1	4419	4419		18.324	0	1	48364			39649	34390	32719	32743	43060	43060					0.04518123451236988
NGDNLLVLF	9	Unmodified	_NGDNLLVLF_					0	0	0			REV__ENSG00000181378|ENST00000341552|CFAP65	REV__ENSG00000181378|ENST00000341552|CFAP65	MULTI-MSMS	OvCa99_classI_Rep5	1	502.7751770019531	2	502.7742	1003.53385	1.4702	0.00073918	-0.18681	-9.3921E-05	1.2834	0.00064525	502.7742882548864	148.98	1.1252	148.98	148.42	149.55	0					53	22	3	0	0	0	0.42676	1	17455	17455		49.442	4.9105	1	341640	+		39650	22229	32720	32744	43061	43061					0.03222054068953639
NGFQNQKHRK	10	Unmodified	_NGFQNQKHRK_					0	0	0		nc|ENSG00000290757|Q5NE16|CTSL3P	nc|ENSG00000290757|Q5NE16|CTSL3P	nc|ENSG00000290757|Q5NE16|CTSL3P	MULTI-MSMS	OvCa99_classI_Rep5	1	419.5599670410156	3	419.55841	1255.6534	0.161	6.7547E-05	1.9012	0.00079765	2.0622	0.0008652	419.55954588622086	43.112	1.3712	43.112	42.709	44.08	0					104	31	6	0	0	0	0.55109	1	2818	2818		47.96	3.5823	1	3225400			39651	15395	32721	32745	43062	43062					0.035800604662199476
NGGHLVLLL	9	Unmodified	_NGGHLVLLL_					0	0	0			REV__ENSG00000091622|ENST00000262483|PITPNM3	REV__ENSG00000091622|ENST00000262483|PITPNM3	MULTI-SECPEP	OvCa9_classI_Rep3	3	468.30633544921875	2	468.287277	934.560001	-0.16156	-7.5657E-05	0.71247	0.00033364	0.55091	0.00025798	468.2875530131727	102.81	0.416	101.28	101	101.41	-1.5211					12	7	2	0	0	0	0.027408	1	7092	7092		57.811	2.9167	1	19176	+		39652	17253	32722	32746	43063	43063					0.09010368031101734
NGGYKDIKKEL	11	Unmodified	_NGGYKDIKKEL_					0	0	0		tr|A0A553SK64|A0A553SK64_NIACIUvrABCsystemproteinCOS=NialliacirculansOX=1397GN=uvrCPE=3SV=1	tr|A0A553SK64|A0A553SK64_NIACIUvrABCsystemproteinCOS=NialliacirculansOX=1397GN=uvrCPE=3SV=1	tr|A0A553SK64|A0A553SK64_NIACIUvrABCsystemproteinCOS=NialliacirculansOX=1397GN=uvrCPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	422.22393798828125	3	422.23471	1263.6823	-0.33858	-0.00014296	3.3686	0.0014224	3.0301	0.0012794	422.23746518710334	62.213	0.57974	58.756	58.382	58.962	-3.4577					18	11	2	0	0	0	0.026007	1	4263	4263		4.8861	0	1	21366			39653	33583	32723	32747	43064	43064					0.06100740252009018
NGHCNNKR	8	Unmodified	_NGHCNNKR_					0	0	0			REV__ENST00000484499.5_1_X:48791963-48792283:-|nuORF	REV__ENST00000484499.5_1_X:48791963-48792283:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.7559509277344	2	471.719767	941.424981	1.0122	0.00047745	2.1317	0.0010056	3.1439	0.001483	471.720473958405	60.928	1.2777	57.498	56.947	58.225	-3.43					58	25	3	0	0	0	0.028476	1	4090	4090		18.324	6.1176	1	124570	+		39654	16849	32724	32748	43065	43065					-0.048074353823153615
NGHCNNKR	8	Unmodified	_NGHCNNKR_					0	0	0			REV__ENST00000484499.5_1_X:48791963-48792283:-|nuORF	REV__ENST00000484499.5_1_X:48791963-48792283:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	471.719767	941.424981	-0.84947	-0.00040071	4.1055	0.0019367	3.2561	0.001536	471.72147582729735	60.307	1.0038	57.537	57.186	58.19	-2.7702	0.019511	0.0011811	NaN	18.324	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30131	+		39655	16849	32724	32748							-0.048074353823153615
NGIEVLRR	8	Unmodified	_NGIEVLRR_					0	0	0		tr|A0A7D7A790|A0A7D7A790_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_23265PE=4SV=1	tr|A0A7D7A790|A0A7D7A790_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_23265PE=4SV=1	tr|A0A7D7A790|A0A7D7A790_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_23265PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.7853088378906	2	478.785433	955.556313	-1.2107	-0.00057965	1.0567	0.00050594	-0.15395	-7.3708E-05	478.7858288212029	146.58	1.5256	145.15	144.7	146.22	-1.4357					68	29	4	0	0	0	0.75241	1	14409	14409		25.45	1.2474	1	466310			39656	36204	32725	32749	43066	43066					0.07675698257230579
NGINKINV	8	Unmodified	_NGINKINV_					0	0	0		tr|A0A7D6VMJ3|A0A7D6VMJ3_9CLOTClassIIfructose-bisphosphatealdolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13935PE=4SV=1	tr|A0A7D6VMJ3|A0A7D6VMJ3_9CLOTClassIIfructose-bisphosphatealdolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13935PE=4SV=1	tr|A0A7D6VMJ3|A0A7D6VMJ3_9CLOTClassIIfructose-bisphosphatealdolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13935PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.2544250488281	2	436.253434	870.492316	1.0375	0.00045262	-1.1216	-0.0004893	-0.084084	-3.6682E-05	436.2528532013975	67.193	1.3327	63.703	63	64.333	-3.4902					49	26	3	0	0	0	0.72896	1	4931	4931		37.159	0.13063	1	296230			39657	34659	32726	32750	43067	43067					0.051889181002820806
NGINKINV	8	Unmodified	_NGINKINV_					0	0	0		tr|A0A7D6VMJ3|A0A7D6VMJ3_9CLOTClassIIfructose-bisphosphatealdolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13935PE=4SV=1	tr|A0A7D6VMJ3|A0A7D6VMJ3_9CLOTClassIIfructose-bisphosphatealdolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13935PE=4SV=1	tr|A0A7D6VMJ3|A0A7D6VMJ3_9CLOTClassIIfructose-bisphosphatealdolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13935PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	436.253434	870.492316	0.82552	0.00036014	-0.58902	-0.00025696	0.2365	0.00010317	436.25311526021915	66.586	1.3897	63.89	63.368	64.758	-2.6958	0.093808	0.00029223	NaN	37.159	40	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66544			39658	34659	32726	32750							0.051889181002820806
NGIPTPLI	8	Unmodified	_NGIPTPLI_					0	0	0		ENSG00000143341|ENST00000271588|HMCN1;nc|ENSG00000143341|Q96RW7-2|HMCN1;HMCN1|p.T3358Sfs*4|1|0.06|ENSG00000143341|chr1:186093545-186093546|-/GT|frameshift_variant	ENSG00000143341|ENST00000271588|HMCN1	ENSG00000143341|ENST00000271588|HMCN1	MULTI-MSMS	OvCa9_classI_Rep2	2	412.746826171875	2	412.747453	823.480354	0.75275	0.0003107	-3.7611	-0.0015524	-3.0083	-0.0012417	412.74581316945023	134.99	1.618	134.76	134.29	135.91	-0.22696					65	32	3	0	0	0	0.64026	1	13372	13372		55.504	5.4797	1	284470			39659	5038	32727	32751	43068	43068					0.06155301357091503
NGITALLGP	9	Unmodified	_NGITALLGP_					0	0	0			REV__tr|A0A7D6VNB8|A0A7D6VNB8_9CLOTRibonucleaseZOS=ClostridiumintestinaleOX=36845GN=rnzPE=3SV=1	REV__tr|A0A7D6VNB8|A0A7D6VNB8_9CLOTRibonucleaseZOS=ClostridiumintestinaleOX=36845GN=rnzPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	427.2550048828125	2	428.25036	854.486168	-0.39298	-0.00016829	1.8359	0.00078621	1.4429	0.00061792	428.251117950274	49.351	0.55976	49.351	49.164	49.723	0					17	12	2	0	0	0	0.027462	1	3655	3655		17.365	0	1	276590	+		39660	31168	32728	32752	43069	43069					0.0531039986876749
NGKLGLMKKLH	11	Unmodified	_NGKLGLMKKLH_					0	0	0			REV__nc|ENSG00000121964|Q4AE62-3|GTDC1	REV__nc|ENSG00000121964|Q4AE62-3|GTDC1	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8703002929688	2	619.873725	1237.7329	-2.7857	-0.0017268	-4.1738	-0.0025872	-6.9595	-0.004314	619.8709153162803	147.4	3.9416	146.45	144.36	148.3	-0.9512					241	78	4	0	0	0	0.72466	1	12560	12560		19.997	2.6318	1	225770	+		39661	18570	32729	32753	43070	43070					0.12353991096006212
NGLHLLGAL	9	Unmodified	_NGLHLLGAL_					0	0	0			REV__ENSG00000278259|ENST00000614623|MYO19	REV__ENSG00000278259|ENST00000614623|MYO19	MULTI-SECPEP	OvCa99_classI_Rep5	1	454.21875	2	454.271627	906.528701	-0.6747	-0.0003065	0.51345	0.00023325	-0.16124	-7.3249E-05	454.2717486857002	27.072	0.39942	27.072	26.792	27.191	0					12	7	3	0	0	0	0.027462	1	752	752		16.473	0	1	62676	+		39662	23640	32730	32754	43071	43071					0.0716979499700301
NGLISNRSVLR	11	Unmodified	_NGLISNRSVLR_					0	0	0		ENSG00000104866|ENST00000221462|PPP1R37;ENST00000422370.2_1_19:45647868-45648611:+|nuORF	ENSG00000104866|ENST00000221462|PPP1R37	ENSG00000104866|ENST00000221462|PPP1R37	MULTI-MSMS	OvCa99_classI_Rep5	1	410.2420959472656	3	410.242199	1227.70477	1.0394	0.00042642	-0.83684	-0.00034331	0.20258	8.3108E-05	410.2416738064815	44.982	0.62583	44.982	44.706	45.332	0					28	13	3	0	0	0	0.60035	1	3086	3086		44.639	2.3969	1	511170			39663	2401	32731	32755	43072	43072					0.10002384440258538
NGLKTIAE	8	Unmodified	_NGLKTIAE_					0	0	0			REV__tr|A0A7D6VST0|A0A7D6VST0_9CLOTStk1familyPASTAdomain-containingSer/ThrkinaseOS=ClostridiumintestinaleOX=36845GN=pknBPE=4SV=1	REV__tr|A0A7D6VST0|A0A7D6VST0_9CLOTStk1familyPASTAdomain-containingSer/ThrkinaseOS=ClostridiumintestinaleOX=36845GN=pknBPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	424.2028503417969	2	423.239993	844.465432	-0.65822	-0.00027859	-1.5621	-0.00066114	-2.2203	-0.00093973	423.2388264228818	55.836	0.55939	52.541	52.311	52.87	-3.2944					21	10	3	0	0	0	0.028476	1	3533	3533		11.511	0	1	36271	+		39664	31536	32732	32756	43073	43073					0.03697809489096926
NGLLEKDLTL	10	Unmodified	_NGLLEKDLTL_					0	0	0		tr|A0A553SMH3|A0A553SMH3_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22585PE=4SV=1	tr|A0A553SMH3|A0A553SMH3_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22585PE=4SV=1	tr|A0A553SMH3|A0A553SMH3_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22585PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.3300170898438	2	558.318971	1114.62339	0.71147	0.00039723	-0.71048	-0.00039668	0.00099122	5.5341E-07	558.318245715846	109.56	0.46915	107.83	107.47	107.94	-1.7256					13	8	2	0	0	0	0.026931	1	10068	10068		23.523	0.94304	1	18831			39665	33833	32733	32757	43074	43074					0.0706626395767671
NGLLEKDLTL	10	Unmodified	_NGLLEKDLTL_					0	0	0		tr|A0A553SMH3|A0A553SMH3_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22585PE=4SV=1	tr|A0A553SMH3|A0A553SMH3_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22585PE=4SV=1	tr|A0A553SMH3|A0A553SMH3_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22585PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	558.318971	1114.62339	0.66392	0.00037068	1.2412	0.00069297	1.9051	0.0010636	558.3194221957934	108.32	0.1982	108.1	107.93	108.12	-0.22498	0.13427	0.001588	NaN	23.523	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12319			39666	33833	32733	32757							0.0706626395767671
NGNDLKKSW	9	Unmodified	_NGNDLKKSW_					0	0	0			REV__nc|ENSG00000162692|P19320-2|VCAM1	REV__nc|ENSG00000162692|P19320-2|VCAM1	MULTI-MSMS	OvCa99_classI_Rep5	1	531.2767333984375	2	531.272355	1060.53016	1.6618	0.00088289	4.0964	0.0021763	5.7583	0.0030592	531.2743359156506	122.74	1.1133	122.74	122.4	123.51	0					63	22	3	0	0	0	0.13504	1	14151	14151		87.696	2.7809	1	1087400	+		39667	20765	32734	32758	43075	43075					0.0023138429510254355
NGNPTQRHVL	10	Unmodified	_NGNPTQRHVL_					0	0	0			REV__ENSG00000112624|ENST00000314073|BICRAL	REV__ENSG00000112624|ENST00000314073|BICRAL	MULTI-MSMS	OvCa99_classI_Rep5	1	568.3025512695312	2	568.301978	1134.5894	2.8224	0.001604	-1.0446	-0.00059363	1.7778	0.0010103	568.3014781652474	96.355	1.0976	96.355	95.869	96.966	0					54	25	3	0	0	0	0.49558	1	10530	10530		54.776	7.119	1	7521300	+		39668	18109	32735	32759	43076	43076					0.027492803092854956
NGPPGPKF	8	Unmodified	_NGPPGPKF_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa99_classI_Rep5	1	407.2174987792969	2	407.216321	812.418088	0.80434	0.00032754	-0.39358	-0.00016027	0.41075	0.00016727	407.2160301534717	55.895	1.021	55.895	55.641	56.662	0					51	24	4	0	0	0	0.71369	1	4589	4589		40.573	7.0796	1	5433100	+		39669	28942;32737	32736	32760	43077	43077					0.00437575008766089
NGPVPLKNKWI	11	Unmodified	_NGPVPLKNKWI_					0	0	0			REV__ENST00000342992.10_3_2:179400050-179400158:-|nuORF	REV__ENST00000342992.10_3_2:179400050-179400158:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3690795898438	2	633.371872	1264.72919	-4.5141	-0.0028591	0.26314	0.00016666	-4.251	-0.0026925	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.70865	2	15724	15697;15724		26.693	4.733	1	369460	+		39670	24658	32737	32761	43078;43079	43079					0.10741644593827004
NGQAVKPLPL	10	Unmodified	_NGQAVKPLPL_					0	0	0		RUSC2|p.P1138Vfs*6|1|0.05|ENSG00000198853|chr9:35560051-35560052|-/GT|frameshift_variant;ENSG00000198853|ENST00000361226|RUSC2	RUSC2|p.P1138Vfs*6|1|0.05|ENSG00000198853|chr9:35560051-35560052|-/GT|frameshift_variant	RUSC2|p.P1138Vfs*6|1|0.05|ENSG00000198853|chr9:35560051-35560052|-/GT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	518.8106079101562	2	518.811116	1035.60768	0.3563	0.00018485	-0.80321	-0.00041671	-0.44691	-0.00023186	518.8106044790309	108.96	1.5339	108.73	108.27	109.81	-0.22498					87	30	4	0	0	0	0.59703	1	10261	10261		42.396	3.1433	1	921920			39671	8890	32738	32762	43080	43080					0.09130022231283874
NGQMQPAGPS	10	Unmodified	_NGQMQPAGPS_					0	0	0			REV__nc|ENSG00000168066|Q15637-7|SF1	REV__nc|ENSG00000168066|Q15637-7|SF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.69708251953125	2	493.721641	985.428729	0.36838	0.00018188	1.5839	0.00078203	1.9523	0.0009639	493.7229135376317	45.563	0.51668	45.563	45.373	45.89	0					16	11	2	0	0	0	0.027056	1	3160	3160		9.7057	0	1	120340	+		39672	21343	32739	32763	43081	43081					-0.06456810399106416
NGSFVMLDEL	10	Oxidation (M)	_NGSFVM(Oxidation (M))LDEL_		NGSFVM(1)LDEL		NGSFVM(69)LDEL	0	0	1		tr|A0A553SSR1|A0A553SSR1_NIACIMannosylglyceratehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_03625PE=3SV=1	tr|A0A553SSR1|A0A553SSR1_NIACIMannosylglyceratehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_03625PE=3SV=1	tr|A0A553SSR1|A0A553SSR1_NIACIMannosylglyceratehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_03625PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	570.7647094726562	2	570.765714	1139.51688	-0.68727	-0.00039227	-2.8463	-0.0016245	-3.5335	-0.0020168	570.7639375463239	41.921	5.4029	41.921	39.711	45.114	0					302	122	5	0	0	0	0.39718	1	2576	2576		68.846	26.372	1	2972500			39673	34405	32740	32764	43082	43082		760			-0.04730234599173855
NGVEVGRSI	9	Unmodified	_NGVEVGRSI_					0	0	0			REV__tr|A0A7D6VS25|A0A7D6VS25_9CLOTProline--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=proSPE=3SV=1	REV__tr|A0A7D6VS25|A0A7D6VS25_9CLOTProline--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=proSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	465.75286865234375	2	465.753798	929.493044	-0.66211	-0.00030838	0.59578	0.00027749	-0.066328	-3.0893E-05	465.7539083170596	59.929	2.3565	57.159	56.567	58.924	-2.7702					98	44	5	0	0	0	0.40667	1	4427	4427		51.335	0.14276	1	1317300	+		39674	31462	32741	32765	43083	43083					0.025477127493559237
NGVVITKKV	9	Unmodified	_NGVVITKKV_					0	0	0			REV__ENSG00000163872|ENST00000305135|YEATS2	REV__ENSG00000163872|ENST00000305135|YEATS2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.7939453125	2	479.30821	956.601866	-1.9197	-0.00092011	0.73176	0.00035074	-1.1879	-0.00056937	479.30856074865073	108.28	0.75931	106.55	106.37	107.13	-1.7256					22	14	2	0	0	0	0.027462	1	9888	9888		49.442	16.629	1	47333	+		39675	20903	32742	32766	43084	43084					0.12182923719615246
NGVVITKKV	9	Unmodified	_NGVVITKKV_					0	0	0			REV__ENSG00000163872|ENST00000305135|YEATS2	REV__ENSG00000163872|ENST00000305135|YEATS2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	479.30821	956.601866	-0.30277	-0.00014512	-0.00061116	-2.9293E-07	-0.30338	-0.00014541	479.3080892828152	106.57	0.89355	106.27	106.03	106.92	-0.30836	-0.20002	0.00021453	NaN	49.442	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43191	+		39676	20903	32742	32766							0.12182923719615246
NGVVITKKV	9	Unmodified	_NGVVITKKV_					0	0	0			REV__ENSG00000163872|ENST00000305135|YEATS2	REV__ENSG00000163872|ENST00000305135|YEATS2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	479.30821	956.601866	0.60214	0.00028861	-0.82533	-0.00039559	-0.22319	-0.00010698	479.30768707522617	107.78	0.94825	106.58	106.27	107.22	-1.1978	0.11322	-0.00057606	NaN	49.442	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36102	+		39677	20903	32742	32766							0.12182923719615246
NGYKPIVFE	9	Unmodified	_NGYKPIVFE_					0	0	0		tr|A0A7D7A3B0|A0A7D7A3B0_9CLOTFAD-dependentproteinC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20990PE=4SV=1	tr|A0A7D7A3B0|A0A7D7A3B0_9CLOTFAD-dependentproteinC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20990PE=4SV=1	tr|A0A7D7A3B0|A0A7D7A3B0_9CLOTFAD-dependentproteinC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20990PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.3156127929688	2	533.782025	1065.5495	-2.5288	-0.0013498	1.9967	0.0010658	-0.53217	-0.00028406	533.783037780922	119.58	0.36808	118.24	117.98	118.35	-1.3444					10	6	2	0	0	0	0.027462	1	11220	11220		26.693	0	1	12960			39678	36111	32743	32767	43085	43085					0.01934340586012695
NGYMQAHETV	10	Oxidation (M)	_NGYM(Oxidation (M))QAHETV_		NGYM(1)QAHETV		NGYM(60)QAHETV	0	0	1			REV__tr|A0A7D6ZJT1|A0A7D6ZJT1_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09715PE=4SV=1	REV__tr|A0A7D6ZJT1|A0A7D6ZJT1_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09715PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	583.2490844726562	2	583.250763	1164.48697	0.67489	0.00039363	-3.8294	-0.0022335	-3.1545	-0.0018399	583.2484035489165	130.41	1.8783	130.18	129.81	131.69	-0.22696					86	37	3	0	0	0	0.45822	1	12855	12855		60.118	8.7828	1	516500	+		39679	32091	32744	32768	43086	43086		713			-0.08869173544508158
NHFTQEQVP	9	Unmodified	_NHFTQEQVP_					0	0	0		nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27	nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27	nc|ENSG00000159314|Q6ZUM4-3|ARHGAP27	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.3123779296875	2	550.261988	1098.50942	-0.019002	-1.0456E-05	-0.84059	-0.00046254	-0.85959	-0.000473	550.261534167835	105.51	0.26041	105.51	105.31	105.57	0					8	5	2	0	0	0	0.027433	1	11851	11851		60.972	6.1956	1	360970			39680	15123	32745	32769	43087	43087					-0.035892060845753804
NHIDKSGL	8	Unmodified	_NHIDKSGL_					0	0	0		nc|ENSG00000005175|Q9H6T3-3|RPAP3;nc|ENSG00000005175|Q9H6T3-2|RPAP3;ENSG00000005175|ENST00000005386|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	MULTI-MSMS	OvCa9_classI_Rep4_	4	442.2365417480469	2	442.235242	882.45593	-1.0791	-0.00047723	1.0634	0.00047025	-0.015772	-6.9749E-06	442.23567133771746	53.587	2.1485	50.379	49.844	51.992	-3.208					94	41	4	0	0	0	0.36941	1	3302	3302		94.006	1.8158	1	1837400			39681	846	32746	32770	43088	43088					0.010000412035765294
NHIRFDRGP	9	Unmodified	_NHIRFDRGP_					0	0	0			REV__ENSG00000189030|ENST00000339922|VHLL	REV__ENSG00000189030|ENST00000339922|VHLL	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.790283203125	2	556.291414	1110.56827	1.9057	0.0010601	0.39117	0.0002176	2.2969	0.0012777	556.2916414362454	116.94	0.49579	116.94	116.68	117.18	0					25	10	3	0	0	0	0.027462	1	13402	13402		35.618	0	1	383300	+		39682	22755	32747	32771	43089	43089					0.017413150004358613
NHLPSDFKV	9	Unmodified	_NHLPSDFKV_					0	0	0		CON__Q99PS0	CON__Q99PS0	CON__Q99PS0	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.3067626953125	2	528.777274	1055.53999	2.4846	0.0013138	2.8825	0.0015242	5.367	0.002838	528.7768818158402	75.145	0.20408	75.145	75.005	75.209	0					6	4	2	0	0	0	0.027462	1	7475	7475		34.173	14.176	1	315990		+	39683	663	32748	32772	43090	43090					0.01444572300465552
NHPVALEGVD	10	Unmodified	_NHPVALEGVD_					0	0	0			REV__nc|ENSG00000158560|O14576-3|DYNC1I1	REV__nc|ENSG00000158560|O14576-3|DYNC1I1	MULTI-MSMS	OvCa9_classI_Rep2	2	525.7623901367188	2	525.764363	1049.51417	-1.0057	-0.00052877	-0.30927	-0.0001626	-1.315	-0.00069138	525.7640860878864	63.827	1.9331	61.082	60.638	62.571	-2.7444					79	36	4	0	0	0	0.66721	1	4860	4860		34.173	1.3601	1	975490	+		39684	20573	32749	32773	43091	43091					-0.008603219417864238
NHQGITTG	8	Unmodified	_NHQGITTG_					0	0	0		ENST00000355739.8_3_13:103498044-103498317:+|nuORF	ENST00000355739.8_3_13:103498044-103498317:+|nuORF	ENST00000355739.8_3_13:103498044-103498317:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	414.2075500488281	2	414.203941	826.39333	3.27	0.0013545	3.9266	0.0016264	7.1966	0.0029809	414.20543467476455	80.493	0.59348	80.493	80.192	80.786	0					26	13	3	0	0	0	0.67745	1	8270	8270		47.916	3.3845	1	772210			39685	10683	32750	32774	43092	43092					-0.026811048646322888
NHQLPRER	8	Unmodified	_NHQLPRER_					0	0	0		nc|ENSG00000078725|O60477-3|BRINP1;ENSG00000078725|ENST00000265922|BRINP1	nc|ENSG00000078725|O60477-3|BRINP1	nc|ENSG00000078725|O60477-3|BRINP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.8078002929688	2	525.283589	1048.55262	-0.68918	-0.00036201	3.918	0.0020581	3.2288	0.0016961	525.2856911264765	67.838	0.74329	67.838	67.371	68.114	0					36	18	3	0	0	0	0.028476	1	6386	6386		47.916	3.7988	1	349830			39686	1599	32751	32775	43093	43093					0.03029028483365437
NHRLIFKSFI	10	Unmodified	_NHRLIFKSFI_					0	0	0		L1MEg_dup1746|chr2:99099337-99100538:+|1.3153921071676258|0.3908750287807103|1.75|429.0|57|1|anti-sense	L1MEg_dup1746|chr2:99099337-99100538:+|1.3153921071676258|0.3908750287807103|1.75|429.0|57|1|anti-sense	L1MEg_dup1746|chr2:99099337-99100538:+|1.3153921071676258|0.3908750287807103|1.75|429.0|57|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	638.7699584960938	2	637.87204	1273.72953	0.82895	0.00052877	-2.117	-0.0013504	-1.2881	-0.00082161	637.8706781741738	161.03	0.39992	161.03	160.81	161.21	0					12	7	2	0	0	0	0.027241	1	18865	18865		24.519	0.99649	1	57419			39687	14632	32752	32776	43094	43094					0.10361064313656243
NHRPPQPLK	9	Unmodified	_NHRPPQPLK_					0	0	0		ENSG00000185015|ENST00000321764|CA13	ENSG00000185015|ENST00000321764|CA13	ENSG00000185015|ENST00000321764|CA13	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.8135375976562	2	543.811982	1085.60941	3.1135	0.0016932	-0.35897	-0.00019521	2.7545	0.0014979	543.8111165772955	133.09	1.1762	131.56	131.16	132.34	-1.5257					52	23	3	0	0	0	0.55588	1	12801	12801		37.159	3.6435	1	78398			39688	8213	32753	32777	43095	43095					0.07003076039882217
NHRPPQPLK	9	Unmodified	_NHRPPQPLK_					0	0	0		ENSG00000185015|ENST00000321764|CA13	ENSG00000185015|ENST00000321764|CA13	ENSG00000185015|ENST00000321764|CA13	MULTI-MATCH	OvCa9_classI_Rep2	2		2	543.811982	1085.60941	0.15955	8.6764E-05	1.4419	0.0007841	1.6014	0.00087086	543.8127816896807	131.65	1.6674	131.42	131.15	132.82	-0.22696	-0.11914	8.4406E-05	NaN	37.159	67	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118550			39689	8213	32753	32777							0.07003076039882217
NHRPPQPLK	9	Unmodified	_NHRPPQPLK_					0	0	0		ENSG00000185015|ENST00000321764|CA13	ENSG00000185015|ENST00000321764|CA13	ENSG00000185015|ENST00000321764|CA13	MULTI-MATCH	OvCa9_classI_Rep3	3		2	543.811982	1085.60941	-0.17868	-9.7171E-05	3.597	0.0019561	3.4183	0.0018589	543.8129235470276	132.76	0.88388	131.64	131.29	132.17	-1.1249	0.096061	0.0024284	NaN	37.159	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20699			39690	8213	32753	32777							0.07003076039882217
NHRSRVTV	8	Unmodified	_NHRSRVTV_					0	0	0		ENST00000472518.1_1_2:74659592-74668973:-|nuORF;ENSG00000114993|ENST00000272430|RTKN	ENST00000472518.1_1_2:74659592-74668973:-|nuORF	ENST00000472518.1_1_2:74659592-74668973:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	484.7750549316406	2	484.772857	967.531161	2.8954	0.0014036	2.0107	0.00097471	4.9061	0.0023783	484.7737568931077	89.578	1.1906	89.578	89.313	90.504	0					65	28	4	0	0	0	0.50674	2	9563	9563;9592		76.847	5.5509	1	15242000			39691	3055	32754	32778	43096;43097	43096					0.04609643454671186
NHRSRVTV	8	Unmodified	_NHRSRVTV_					0	0	0		ENST00000472518.1_1_2:74659592-74668973:-|nuORF;ENSG00000114993|ENST00000272430|RTKN	ENST00000472518.1_1_2:74659592-74668973:-|nuORF	ENST00000472518.1_1_2:74659592-74668973:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	484.7738952636719	2	484.772857	967.531161	1.046	0.00050707	1.2214	0.00059208	2.2673	0.0010991	484.77344610274326	91.377	2.4981	90.141	89.488	91.987	-1.2355					132	47	4	0	0	0	0.39692	3	8103	8086;8103;8133		88.643	6.3378	1	3844000			39692	3055	32754	32778	43098;43099;43100	43099					0.04609643454671186
NHRSRVTV	8	Unmodified	_NHRSRVTV_					0	0	0		ENST00000472518.1_1_2:74659592-74668973:-|nuORF;ENSG00000114993|ENST00000272430|RTKN	ENST00000472518.1_1_2:74659592-74668973:-|nuORF	ENST00000472518.1_1_2:74659592-74668973:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	484.77392578125	2	484.772857	967.531161	-1.5084	-0.00073122	2.6114	0.0012659	1.103	0.00053471	484.77403906510136	92.046	3.4526	90.022	89.433	92.885	-2.0241					159	69	4	0	0	0	0.33245	4	5875	5867;5875;5880;5888		101.21	17.265	1	6192900			39693	3055	32754	32778	43101;43102;43103;43104	43102					0.04609643454671186
NHRSRVTV	8	Unmodified	_NHRSRVTV_					0	0	0		ENST00000472518.1_1_2:74659592-74668973:-|nuORF;ENSG00000114993|ENST00000272430|RTKN	ENST00000472518.1_1_2:74659592-74668973:-|nuORF	ENST00000472518.1_1_2:74659592-74668973:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.775146484375	2	484.772857	967.531161	-0.9086	-0.00044046	3.0182	0.0014632	2.1096	0.0010227	484.77432100940536	92.678	2.6189	90.17	89.602	92.221	-2.5072					128	53	4	0	0	0	0.39692	4	8082	8082;8094;8107;8119		88.643	5.5509	1	5506400			39694	3055	32754	32778	43105;43106;43107;43108	43105					0.04609643454671186
NHRWKYVN	8	Unmodified	_NHRWKYVN_					0	0	0		nc|ENSG00000164458|O15178-2|TBXT;nc|ENSG00000164458|O15178|TBXT;ENSG00000164458|ENST00000366876|TBXT	nc|ENSG00000164458|O15178-2|TBXT	nc|ENSG00000164458|O15178-2|TBXT	MULTI-MSMS	OvCa9_classI_Rep2	2	558.7906494140625	2	558.788507	1115.56246	1.0281	0.00057451	1.5012	0.00083888	2.5294	0.0014134	558.789100744105	125.18	1.1377	124.95	124.66	125.8	-0.2359					55	22	3	0	0	0	0.71369	1	12210	12210		40.573	1.3198	1	105130			39695	6459	32755	32779	43109	43109					0.009302164887458275
NHSEDLAKL	9	Unmodified	_NHSEDLAKL_					0	0	0			REV__ENSG00000072786|ENST00000176763|STK10	REV__ENSG00000072786|ENST00000176763|STK10	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.8143920898438	2	513.764363	1025.51417	-0.41162	-0.00021148	0.59396	0.00030515	0.18234	9.3679E-05	514.2655337094515	96.921	0.6724	95.092	94.672	95.345	-1.8286					17	12	2	0	0	0	0.027343	1	6348	6348		58.782	0	1	13215	+		39696	16923	32756	32780	43110	43110					0.0024367805817746557
NHSLISSISL	10	Unmodified	_NHSLISSISL_					0	0	0			REV__chr11:119418852-119420051|89|100.35|0.02|12.69|-|2|None,THY1|1	REV__chr11:119418852-119420051|89|100.35|0.02|12.69|-|2|None,THY1|1	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.6099243164062	2	535.795663	1069.57677	2.0742	0.0011114	-0.7509	-0.00040233	1.3233	0.00070903	535.7955882302077	66.039	0.61051	63.093	62.655	63.265	-2.9459					17	11	2	0	0	0	0.027028	1	2673	2673		24.519	9.8551	1	9843.8	+		39697	15854	32757	32781	43111	43111					0.04476824126390966
NHSLISSISL	10	Unmodified	_NHSLISSISL_					0	0	0			REV__chr11:119418852-119420051|89|100.35|0.02|12.69|-|2|None,THY1|1	REV__chr11:119418852-119420051|89|100.35|0.02|12.69|-|2|None,THY1|1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	535.795663	1069.57677	0.14239	7.6291E-05	-7.4739	-0.0040045	-7.3315	-0.0039282	535.79187027053	65.902	1.5019	63.206	62.314	63.816	-2.6958	0.056335	-0.0012462	NaN	24.519	62	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35809	+		39698	15854	32757	32781							0.04476824126390966
NHVFLQFVI	9	Unmodified	_NHVFLQFVI_					0	0	0		ENST00000560715.5_1_15:77348115-77348262:-|nuORF	ENST00000560715.5_1_15:77348115-77348262:-|nuORF	ENST00000560715.5_1_15:77348115-77348262:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.287841796875	2	558.813659	1115.61277	1.5494	0.0008658	2.1646	0.0012096	3.714	0.0020754	558.8153785215513	33.221	0.19896	30.526	30.402	30.601	-2.6954					5	3	2	0	0	0	0.027462	1	875	875		24.203	0	1	6909.3			39699	13739	32758	32782	43112	43112					0.05958326093900723
NHVMLKQVALL	11	Unmodified	_NHVMLKQVALL_					0	0	0			REV__nc|ENSG00000047249|Q9UI12-2|ATP6V1H	REV__nc|ENSG00000047249|Q9UI12-2|ATP6V1H	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3687744140625	2	633.373558	1264.73256	-3.894	-0.0024663	-3.0385	-0.0019245	-6.9325	-0.0043909	633.3715080583703	149.82	2.9263	149.6	148.42	151.35	-0.22696					170	58	4	0	0	0	0.71191	1	15185	15185		25.574	4.6271	1	116220	+		39700	16652	32759	32783	43113	43113					0.11078571376174295
NIAFLLVVF	9	Unmodified	_NIAFLLVVF_					0	0	0		tr|A0A553SKU3|A0A553SKU3_NIACIStageIIIsporulationproteinADOS=NialliacirculansOX=1397GN=spoIIIADPE=4SV=1	tr|A0A553SKU3|A0A553SKU3_NIACIStageIIIsporulationproteinADOS=NialliacirculansOX=1397GN=spoIIIADPE=4SV=1	tr|A0A553SKU3|A0A553SKU3_NIACIStageIIIsporulationproteinADOS=NialliacirculansOX=1397GN=spoIIIADPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	518.3168334960938	2	518.315503	1034.61645	-0.27739	-0.00014377	3.3371	0.0017297	3.0597	0.0015859	518.317119052338	137.12	1.3347	136.9	136.16	137.49	-0.22697					65	27	3	0	0	0	0.6926	1	13625	13625		20.482	2.1574	1	143020			39701	33654	32760	32784	43114	43114					0.10052995867749814
NIAIEAKLK	9	Unmodified	_NIAIEAKLK_					0	0	0			REV__nc|ENSG00000144191|Q16281-2|CNGA3	REV__nc|ENSG00000144191|Q16281-2|CNGA3	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.78582763671875	2	500.313492	998.612431	2.5953	0.0012984	-0.59035	-0.00029536	2.0049	0.0010031	500.3131261311572	86.597	0.41223	86.597	86.431	86.844	0					14	9	2	0	0	0	0.027462	1	9170	9170		32.812	0	1	438180	+		39702	19894	32761	32785	43115	43115					0.11306906374045411
NIAIIILKV	9	Unmodified	_NIAIIILKV_					0	0	0			REV__tr|A0A7D6ZS45|A0A7D6ZS45_9CLOTDUF2953domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14375PE=4SV=1	REV__tr|A0A7D6ZS45|A0A7D6ZS45_9CLOTDUF2953domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14375PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.76763916015625	2	498.844428	995.674303	2.2279	0.0011114	-0.010691	-5.3332E-06	2.2172	0.0011061	498.84431808547345	84.793	0.33349	84.793	84.589	84.923	0					11	7	2	0	0	0	0.027462	1	8891	8891		30.504	14.862	1	107020	+		39703	32175	32762	32786	43116	43116					0.17629257793191755
NIAKLTLAR	9	Unmodified	_NIAKLTLAR_					0	0	0			REV__tr|A0A553SL52|A0A553SL52_NIACICytidylatekinaseOS=NialliacirculansOX=1397GN=cmkPE=3SV=1	REV__tr|A0A553SL52|A0A553SL52_NIACICytidylatekinaseOS=NialliacirculansOX=1397GN=cmkPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.2778625488281	2	500.319109	998.623664	-1.2678	-0.00063429	0.41606	0.00020816	-0.8517	-0.00042612	500.319190694384	41.549	0.46516	38.569	38.336	38.801	-2.9804					14	8	2	0	0	0	0.027462	1	1865	1865		44.117	3.5442	1	13364	+		39704	30188	32763	32787	43117	43117					0.12429728468180201
NIALAFHL	8	Unmodified	_NIALAFHL_					0	0	0		ENSG00000183576|ENST00000331768|SETD3;nc|ENSG00000183576|Q86TU7-3|SETD3;nc|ENSG00000183576|Q86TU7-2|SETD3	ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	MULTI-MSMS	OvCa9_classI_Rep4_	4	449.7598571777344	2	449.760895	897.507237	-0.57218	-0.00025734	-4.1142	-0.0018504	-4.6864	-0.0021077	449.75894480274974	73.105	1.7734	69.709	69.301	71.075	-3.3961					72	36	3	0	0	0	0.40641	1	5673	5673		86.935	20.505	1	1388000			39705	8086	32764	32788	43118	43118					0.05438409968269298
NIANKLLIN	9	Unmodified	_NIANKLLIN_					0	0	0		tr|A0A7D6VWH3|A0A7D6VWH3_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04060PE=4SV=1	tr|A0A7D6VWH3|A0A7D6VWH3_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04060PE=4SV=1	tr|A0A7D6VWH3|A0A7D6VWH3_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04060PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.81146240234375	2	506.811116	1011.60768	-0.91945	-0.00046599	-1.1845	-0.0006003	-2.1039	-0.0010663	506.81048510289196	101.22	3.3613	98.954	98.29	101.65	-2.2665					172	65	4	0	0	0	0.12365	1	9167	9167		90.777	24.347	1	2669900			39706	35249	32765	32789	43119	43119					0.1023402223128187
NIARPLDR	8	Unmodified	_NIARPLDR_					0	0	0		ENSG00000083857|ENST00000441802|FAT1;FAT1|p.V2563Sfs*5|1|0.19|ENSG00000083857|chr4:186618896-186618899|TCAC/-|frameshift_variant	ENSG00000083857|ENST00000441802|FAT1	ENSG00000083857|ENST00000441802|FAT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.7784118652344	2	477.777608	953.540663	-0.82611	-0.0003947	0.0037772	1.8047E-06	-0.82233	-0.00039289	477.7776089014007	43.823	3.0314	40.816	40.483	43.515	-3.0074					146	58	4	0	0	0	0.65267	1	2137	2137		52.937	3.4952	1	12741000			39707	1705	32766	32790	43120	43120					0.062034117401822186
NICGGETDG	9	Unmodified	_NICGGETDG_					0	0	0			REV__ENST00000593203.1_1_19:10943515-10944133:+|nuORF	REV__ENST00000593203.1_1_19:10943515-10944133:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	433.17156982421875	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.63422	1	1381	1381		27.882	1.0861	1	60065	+		39708	27961	32767	32791	43121	43121					-0.10924467452775843
NICIPYEEDI	10	Unmodified	_NICIPYEEDI_					0	0	0		ENSG00000132326|ENST00000254657|PER2	ENSG00000132326|ENST00000254657|PER2	ENSG00000132326|ENST00000254657|PER2	MULTI-SECPEP	OvCa99_classI_Rep5	1	604.8110961914062	2	604.778822	1207.54309	1.9165	0.0011591	-1.3395	-0.00081007	0.57704	0.00034898	604.7775121296868	122.67	0.68937	122.67	122.4	123.09	0					24	14	2	0	0	0	0.026849	1	14156	14156		32.812	4.7309	1	104640			39709	4127	32768	32792	43122	43122					-0.052379654276819565
NICTMTTGPVY	11	Unmodified	_NICTMTTGPVY_					0	0	0			REV__tr|A0A7D6VMV0|A0A7D6VMV0_9CLOTQuinolinatesynthaseOS=ClostridiumintestinaleOX=36845GN=nadAPE=3SV=1	REV__tr|A0A7D6VMV0|A0A7D6VMV0_9CLOTQuinolinatesynthaseOS=ClostridiumintestinaleOX=36845GN=nadAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	600.2709350585938	2	600.275392	1198.53623	-5.913	-0.0035494	0.33593	0.00020165	-5.577	-0.0033478	600.2754165352742	160.39	2.7294	158.78	158.34	161.07	-1.6101					180	65	4	0	0	0	0.70142	2	15924	15924;15959		29.17	7.2102	1	309270	+		39710	31149	32769	32793	43123;43124	43123					-0.0550960157991085
NIDENIDI	8	Unmodified	_NIDENIDI_					0	0	0		tr|A0A7D6ZGH3|A0A7D6ZGH3_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_18625PE=4SV=1	tr|A0A7D6ZGH3|A0A7D6ZGH3_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_18625PE=4SV=1	tr|A0A7D6ZGH3|A0A7D6ZGH3_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_18625PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	473.23150634765625	2	473.229822	944.445091	2.2663	0.0010725	-0.25262	-0.00011955	2.0137	0.00095292	473.2295688601571	93.873	0.46313	93.873	93.673	94.136	0					18	10	2	0	0	0	0.57734	1	10208	10208		68.787	2.3575	1	610660			39711	35544	32770	32794	43125	43125					-0.029354059613751815
NIDQDTYSV	9	Unmodified	_NIDQDTYSV_					0	0	0		nc|ENSG00000204410|O43196-4|MSH5;nc|ENSG00000204410|O43196-3|MSH5;MSH5|p.C732Tfs*57|1|0.1|ENSG00000204410|chr6:31761828-31761829|-/AACTCAGGCTCCTGCAGCTCTTCTCCCATTTT|frameshift_variant;ENSG00000204410|ENST00000375750|MSH5;nc|ENSG00000204410|O43196-2|MSH5	nc|ENSG00000204410|O43196-4|MSH5	nc|ENSG00000204410|O43196-4|MSH5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.7662963867188	2	527.738011	1053.46147	-1.5648	-0.0008258	1.9914	0.0010509	0.42656	0.00022511	527.7387216482798	93.038	0.70117	90.531	90.262	90.963	-2.5072					23	13	3	0	0	0	0.027353	1	8096	8096		52.937	0	1	26388			39712	15269	32771	32795	43126	43126					-0.06312324795294444
NIDSHEPIT	9	Unmodified	_NIDSHEPIT_					0	0	0			REV__RFX7|p.Q1124Nfs*5|1|0.19|ENSG00000181827|chr15:56094059-56094068|GCTTCTTTGA/-|frameshift_variant	REV__RFX7|p.Q1124Nfs*5|1|0.19|ENSG00000181827|chr15:56094059-56094068|GCTTCTTTGA/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	512.2542114257812	2	513.248546	1024.48254	-0.74696	-0.00038337	3.2458	0.0016659	2.4988	0.0012825	513.7519227867474	86.719	1.5768	84.542	84.18	85.757	-2.1768					59	30	3	0	0	0	0.027453	1	5158	5158		54.776	3.4409	1	120630	+		39713	22251	32772	32796	43127	43127					-0.02872314695764544
NIDVKPGKI	9	Unmodified	_NIDVKPGKI_					0	0	0			REV__ENSG00000124942|ENST00000378024|AHNAK	REV__ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.2994079589844	2	492.297842	982.581131	-0.16435	-8.0907E-05	-0.014924	-7.3472E-06	-0.17927	-8.8254E-05	492.29761743321455	99.146	1.1307	96.821	96.536	97.667	-2.3253					35	21	2	0	0	0	0.28934	1	8830	8830		64.207	14.183	1	367930	+		39714	18711	32773	32797	43128	43128					0.08914333339953373
NIDWFYKVM	9	Unmodified	_NIDWFYKVM_					0	0	0			REV__tr|A0A553SMX7|A0A553SMX7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23235PE=4SV=1	REV__tr|A0A553SMX7|A0A553SMX7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23235PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	405.8661804199219	3	405.867082	1214.57942	3.0031	0.0012189	-3.2771	-0.0013301	-0.27396	-0.00011119	405.8656502294352	58.999	2.532	55.873	55.114	57.646	-3.1264					157	70	3	0	0	0	0.70177	1	2059	2059		12.812	0	1	158560	+		39715	30379	32774	32798	43129	43129					-0.019290437403242322
NIDYTFDFIE	10	Unmodified	_NIDYTFDFIE_					0	0	0		tr|A0A553SMX1|A0A553SMX1_NIACICysteinehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_23230PE=3SV=1	tr|A0A553SMX1|A0A553SMX1_NIACICysteinehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_23230PE=3SV=1	tr|A0A553SMX1|A0A553SMX1_NIACICysteinehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_23230PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	638.0159301757812	2	638.790244	1275.56593	1.4376	0.0009183	-1.5627	-0.00099826	-0.12516	-7.9953E-05	638.789148985558	124.61	0.32348	124.61	124.37	124.7	0					12	6	2	0	0	0	0.026994	1	14379	14379		19.104	9.9206	1	183810			39716	33879	32775	32799	43130	43130					-0.06082623038537349
NIEGLVDNLI	10	Unmodified	_NIEGLVDNLI_					0	0	0		ENSG00000198471|ENST00000358241|RTP2;ENSG00000175077|ENST00000312295|RTP1	ENSG00000198471|ENST00000358241|RTP2	ENSG00000198471|ENST00000358241|RTP2	MULTI-MSMS	OvCa99_classI_Rep5	1	550.305419921875	2	550.303321	1098.59209	1.6187	0.00089075	1.172	0.00064494	2.7906	0.0015357	550.3044020816982	129.26	0.83913	129.26	128.93	129.77	0					31	17	3	0	0	0	0.43433	1	14990	14990		63.534	3.4156	1	122480			39717	7512	32776	32800	43131	43131					0.04673690923573304
NIEKEGDIL	9	Unmodified	_NIEKEGDIL_					0	0	0			REV__tr|A0A7D6VYU4|A0A7D6VYU4_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17860PE=4SV=1	REV__tr|A0A7D6VYU4|A0A7D6VYU4_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17860PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	515.7747802734375	2	515.774396	1029.53424	0.45841	0.00023644	-0.83481	-0.00043058	-0.3764	-0.00019414	515.7739431910483	108.99	0.93954	107.79	107.46	108.4	-1.1978					47	17	3	0	0	0	0.35444	1	7820	7820		56.721	1.8265	1	254800	+		39718	31826	32777	32801	43132	43132					0.020654289981621332
NIEQKNHLD	9	Unmodified	_NIEQKNHLD_					0	0	0			REV__tr|A0A7D6VSL7|A0A7D6VSL7_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23255PE=4SV=1	REV__tr|A0A7D6VSL7|A0A7D6VSL7_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23255PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.8096313476562	2	555.780544	1109.54654	-0.24927	-0.00013854	-0.39914	-0.00022183	-0.6484	-0.00036037	555.7803111439968	55.59	0.57174	55.59	55.401	55.973	0					26	13	4	0	0	0	0.027462	1	4535	4535		20.947	3.582	1	877560	+		39719	31518	32778	32802	43133	43133					-0.003855345388274145
NIERESKS	8	Unmodified	_NIERESKS_					0	0	0		nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799|CPLANE1	nc|ENSG00000197603|Q9H799|CPLANE1	MULTI-MSMS	OvCa99_classI_Rep5	1	481.7493591308594	2	481.748713	961.482873	-0.32124	-0.00015476	0.86735	0.00041784	0.54611	0.00026309	481.74910141335675	35.361	0.65012	35.361	35.149	35.799	0					38	13	4	0	0	0	0.60331	1	1786	1786		63.306	0	1	1655500			39720	8727	32779	32803	43134	43134					0.0005910502410415575
NIFAIQTLK	9	Unmodified	_NIFAIQTLK_					0	0	0		nc|ENSG00000072134|O95208-3|EPN2;nc|ENSG00000072134|O95208-2|EPN2;ENSG00000072134|ENST00000314728|EPN2;ENST00000495155.5_1_17:19186396-19216987:+|nuORF	nc|ENSG00000072134|O95208-3|EPN2	nc|ENSG00000072134|O95208-3|EPN2	MULTI-MSMS	OvCa9_classI_Rep2	2	524.3123168945312	2	524.313492	1046.61243	0.097555	5.1149E-05	-0.29111	-0.00015264	-0.19356	-0.00010149	524.3130874240285	123.11	1.2817	122.89	122.31	123.6	-0.21803					58	25	3	0	0	0	0.38969	1	11935	11935		52.937	1.6012	1	57240			39721	1466	32780	32804	43135	43135					0.09098906374038052
NIFDNYTLHK	10	Unmodified	_NIFDNYTLHK_					0	0	0			REV__ENSG00000077097|ENST00000264331|TOP2B	REV__ENSG00000077097|ENST00000264331|TOP2B	MULTI-MSMS	OvCa99_classI_Rep5	1	632.8209228515625	2	632.81967	1263.62479	2.263	0.001432	0.085158	5.3889E-05	2.3481	0.0014859	632.8197056367402	83.846	0.84287	83.846	83.545	84.388	0					57	19	4	0	0	0	0.45822	1	8728	8728		60.118	0.18749	1	4251800	+		39722	17003	32781	32805	43136	43136					0.003518980464150445
NIFFLLDT	8	Unmodified	_NIFFLLDT_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4|ABCA13	REV__nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.7711486816406	2	491.765843	981.517133	1.07	0.00052621	-2.2736	-0.0011181	-1.2036	-0.00059189	491.7651385804668	98.301	0.25523	98.301	98.121	98.376	0					7	5	2	0	0	0	0.028476	1	10831	10831		19.36	0	1	290800	+		39723	22143	32782	32806	43137	43137					0.025635531830062064
NIFFLPDLH	9	Unmodified	_NIFFLPDLH_					0	0	0		ENST00000489002.5_1_1:172368972-172369014:-|nuORF	ENST00000489002.5_1_1:172368972-172369014:-|nuORF	ENST00000489002.5_1_1:172368972-172369014:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.3237915039062	2	558.297842	1114.58113	0.61107	0.00034116	-1.7504	-0.00097725	-1.1393	-0.00063609	558.2968002280269	105.24	1.1533	103.22	102.9	104.05	-2.0161					62	22	4	0	0	0	0.027462	1	9606	9606		33.516	18.651	1	290910			39724	12670	32783	32807	43138	43138					0.028423333399587136
NIFFLPDLH	9	Unmodified	_NIFFLPDLH_					0	0	0		ENST00000489002.5_1_1:172368972-172369014:-|nuORF	ENST00000489002.5_1_1:172368972-172369014:-|nuORF	ENST00000489002.5_1_1:172368972-172369014:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	558.297842	1114.58113	-0.22095	-0.00012335	-0.92823	-0.00051823	-1.1492	-0.00064158	558.2972007068997	103.73	1.2873	103.15	102.78	104.07	-0.57639	-0.010074	0.00042255	NaN	33.516	62	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	295430			39725	12670	32783	32807							0.028423333399587136
NIFFLPDLH	9	Unmodified	_NIFFLPDLH_					0	0	0		ENST00000489002.5_1_1:172368972-172369014:-|nuORF	ENST00000489002.5_1_1:172368972-172369014:-|nuORF	ENST00000489002.5_1_1:172368972-172369014:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	558.297842	1114.58113	-0.032393	-1.8085E-05	-1.0415	-0.00058147	-1.0739	-0.00059955	558.2971566017555	104.55	1.2475	103.11	102.71	103.96	-1.4347	-0.051178	0.00029606	NaN	33.516	60	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	317910			39726	12670	32783	32807							0.028423333399587136
NIFKQQSF	8	Unmodified	_NIFKQQSF_					0	0	0			REV__tr|A0A7D6ZFA0|A0A7D6ZFA0_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16955PE=4SV=1	REV__tr|A0A7D6ZFA0|A0A7D6ZFA0_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16955PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.808349609375	2	506.266542	1010.51853	-1.3181	-0.00066733	2.4657	0.0012483	1.1476	0.000581	506.26749469637	100.57	0.54635	99.743	99.459	100.01	-0.83052					15	10	2	0	0	0	0.028476	1	9193	9193		25.45	1.2474	1	11358	+		39727	31962	32784	32808	43139	43139					0.013691872717686238
NIFNPRGNL	9	Unmodified	_NIFNPRGNL_					0	0	0		ENSG00000049247|ENST00000361696|UTS2;nc|ENSG00000049247|O95399-2|UTS2	ENSG00000049247|ENST00000361696|UTS2	ENSG00000049247|ENST00000361696|UTS2	MULTI-MSMS	OvCa99_classI_Rep5	1	522.7841186523438	2	522.78289	1043.55123	0.81529	0.00042622	-0.61339	-0.00032067	0.2019	0.00010555	522.7823220204974	90.844	0.71606	90.844	90.382	91.098	0					39	17	3	0	0	0	0.14739	1	9758	9758		85.359	7.0957	1	1885900			39728	1166	32785	32809	43140	43140					0.031193943946163927
NIFPLPASDLQ	11	Unmodified	_NIFPLPASDLQ_					0	0	0			REV__ENST00000526600.1_1_11:12960600-12960762:+|nuORF	REV__ENST00000526600.1_1_11:12960600-12960762:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	405.5530090332031	3	405.552039	1213.63429	0.74305	0.00030134	0.43745	0.00017741	1.1805	0.00047875	405.5521875633834	47.39	1.9857	44.68	44.242	46.228	-2.7097					104	39	4	0	0	0	0.69308	1	2911	2911		32.034	1.4653	1	303990	+		39729	27143	32786	32810	43141	43141					0.036016663319287545
NIFYSPIS	8	Unmodified	_NIFYSPIS_					0	0	0		ENSG00000057149|ENST00000283752|SERPINB3;nc|ENSG00000057149|P29508-2|SERPINB3;ENSG00000206073|ENST00000341074|SERPINB4	ENSG00000057149|ENST00000283752|SERPINB3	ENSG00000057149|ENST00000283752|SERPINB3	MULTI-SECPEP	OvCa99_classI_Rep5	1	469.75213623046875	2	470.742368	939.470183	2.1484	0.0010113	0.18999	8.9435E-05	2.3383	0.0011008	470.74242973237693	85.496	0.32901	85.496	85.334	85.663	0					10	7	2	0	0	0	0.028476	1	8983	8983		60.294	19.721	1	105350			39730	1233	32787	32811	43142	43142					-0.001973063681361964
NIGASEDQIY	10	Unmodified	_NIGASEDQIY_					0	0	0			REV__tr|A0A553SJC4|A0A553SJC4_NIACILPXTGcellwallanchordomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16495PE=4SV=1	REV__tr|A0A553SJC4|A0A553SJC4_NIACILPXTGcellwallanchordomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16495PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.8047485351562	2	555.259111	1108.50367	2.5466	0.001414	-3.1826	-0.0017672	-0.63603	-0.00035316	555.2571849991564	86.724	0.78458	86.724	86.431	87.216	0					30	18	2	0	0	0	0.02661	1	9210	9210		58.782	5.4305	1	182210	+		39731	29993	32788	32812	43143	43143					-0.04624349386904214
NIGGQAAVTHS	11	Unmodified	_NIGGQAAVTHS_					0	0	0			REV__SDHA|p.Q288Tfs*33|1|0.06|ENSG00000073578|chr5:230966-230967|-/A|frameshift_variant	REV__SDHA|p.Q288Tfs*33|1|0.06|ENSG00000073578|chr5:230966-230967|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.7662963867188	2	527.767437	1053.52032	-1.6189	-0.00085438	-2.3526	-0.0012416	-3.9714	-0.002096	527.7660357679764	92.794	1.0039	90.287	89.959	90.963	-2.5072					54	19	3	0	0	0	0.18313	1	8096	8096		82.241	13.454	1	833070	+		39732	16936	32789	32813	43144	43144					-0.004298037102898888
NIGLKKLRAL	10	Unmodified	_NIGLKKLRAL_					0	0	0			REV__MTHFD1L|p.L914Gfs*14|1|0.81|ENSG00000120254|chr6:151037009-151037042|TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA/-|frameshift_variant	REV__MTHFD1L|p.L914Gfs*14|1|0.81|ENSG00000120254|chr6:151037009-151037042|TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.7770385742188	2	563.376958	1124.73936	2.6562	0.0014964	-0.72949	-0.00041098	1.9267	0.0010855	563.3764768992032	85.96	0.44053	85.96	85.83	86.271	0					15	10	2	0	0	0	0.027056	1	9084	9084		35.618	2.8059	1	267720	+		39733	18490	32790	32814	43145	43145					0.18198252319029962
NIGLTGILI	9	Unmodified	_NIGLTGILI_					0	0	0			REV__tr|A0A7D7A2V0|A0A7D7A2V0_9CLOTFlippaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18955PE=4SV=1	REV__tr|A0A7D7A2V0|A0A7D7A2V0_9CLOTFlippaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18955PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	457.60614013671875	2	457.289485	912.564418	-3.0891	-0.0014126	3.106	0.0014203	0.016895	7.7261E-06	457.2908212543901	154.37	0.8887	154.14	153.91	154.8	-0.22696					26	18	2	0	0	0	0.027462	1	15769	15769		33.516	0	1	23999	+		39734	32553	32791	32815	43146	43146					0.10463832454001931
NIGLTGILI	9	Unmodified	_NIGLTGILI_					0	0	0			REV__tr|A0A7D7A2V0|A0A7D7A2V0_9CLOTFlippaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18955PE=4SV=1	REV__tr|A0A7D7A2V0|A0A7D7A2V0_9CLOTFlippaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18955PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	457.289485	912.564418	-5.6315	-0.0025752	5.7967	0.0026508	0.16524	7.5563E-05	457.2920424848324	155.05	0.76093	153.98	153.74	154.51	-1.073	-0.054143	0.000816	NaN	33.516	30	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30390	+		39735	32553	32791	32815							0.10463832454001931
NIGLTGILI	9	Unmodified	_NIGLTGILI_					0	0	0			REV__tr|A0A7D7A2V0|A0A7D7A2V0_9CLOTFlippaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18955PE=4SV=1	REV__tr|A0A7D7A2V0|A0A7D7A2V0_9CLOTFlippaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18955PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	457.289485	912.564418	-4.6118	-0.0021089	4.6524	0.0021275	0.040617	1.8574E-05	457.291478357387	155.46	0.77585	153.97	153.76	154.54	-1.4911	-0.061102	-0.00023057	NaN	33.516	32	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43932	+		39736	32553	32791	32815							0.10463832454001931
NIGLTKLYR	9	Unmodified	_NIGLTKLYR_					0	0	0			REV__tr|A0A7D6VQD8|A0A7D6VQD8_9CLOTAminotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14910PE=3SV=1	REV__tr|A0A7D6VQD8|A0A7D6VQD8_9CLOTAminotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14910PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.3070068359375	2	539.324391	1076.63423	0.68854	0.00037135	-0.69031	-0.0003723	-0.0017692	-9.5417E-07	539.3233969117739	67.167	0.19836	67.167	67.014	67.212	0					6	4	2	0	0	0	0.027462	1	6264	6264		10.265	0	1	240810	+		39737	31317	32792	32816	43147	43147					0.09897711122584951
NIGLWQLWWRL	11	Unmodified	_NIGLWQLWWRL_					0	0	0			REV__ENSG00000196187|ENST00000366835|TMEM63A	REV__ENSG00000196187|ENST00000366835|TMEM63A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.28717041015625	3	495.610223	1483.80884	-0.5212	-0.00025831	-1.046	-0.00051839	-1.5672	-0.0007767	495.9441119719092	40.139	1.0835	37.184	36.913	37.997	-2.9541					45	20	4	0	0	0	0.02642	1	1744	1744		14.694	5.0475	1	46333	+		39738	22796	32793	32817	43148	43148					0.08628711267783729
NIGSEGPKQTR	11	Unmodified	_NIGSEGPKQTR_					0	0	0			REV__ENSG00000182836|ENST00000377801|PLCXD3	REV__ENSG00000182836|ENST00000377801|PLCXD3	MULTI-MSMS	OvCa99_classI_Rep5	1	593.8152465820312	2	593.812376	1185.6102	1.0561	0.00062712	-3.6982	-0.0021961	-2.6422	-0.0015689	593.8105394732856	151.02	0.75812	151.02	150.59	151.35	0					20	14	2	0	0	0	0.62561	1	17680	17680		42.338	0.91146	1	64925	+		39739	22321	32794	32818	43149	43149					0.024818258982804764
NIGVDISSM	9	Unmodified	_NIGVDISSM_					0	0	0			REV__nc|ENSG00000185046|Q7Z6G8-6|ANKS1B	REV__nc|ENSG00000185046|Q7Z6G8-6|ANKS1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.23699951171875	2	468.228768	934.442982	-0.25793	-0.00012077	0.32233	0.00015092	0.064397	3.0152E-05	468.2290006368672	41.29	0.22583	41.29	41.149	41.375	0					7	4	2	0	0	0	0.027462	1	2552	2552		40.778	7.2626	1	32615	+		39740	22475	32795	32819	43150	43150					-0.026861579708338468
NIGYMARKDPL	11	Oxidation (M)	_NIGYM(Oxidation (M))ARKDPL_		NIGYM(1)ARKDPL		NIGYM(60)ARKDPL	0	0	1			REV__ENST00000285106.10_1_18:47814419-47814509:-|nuORF	REV__ENST00000285106.10_1_18:47814419-47814509:-|nuORF	MSMS	OvCa99_classI_Rep5	1	431.89111328125	3	431.892179	1292.65471	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.29	1	38.29	37.79	38.79	0								0	0	0	0.1328	1	2164	2164		60.167	6.5701	1		+		39741	24132	32796	32820	43151	43151		555			0.020085137201022008
NIHDNEVIV	9	Unmodified	_NIHDNEVIV_					0	0	0		ENSG00000134077|ENST00000452837|THUMPD3	ENSG00000134077|ENST00000452837|THUMPD3	ENSG00000134077|ENST00000452837|THUMPD3	MULTI-MSMS	OvCa99_classI_Rep5	1	526.773681640625	2	526.772188	1051.52982	0.15646	8.2416E-05	0.24498	0.00012905	0.40144	0.00021147	526.77241947577	63.12	0.9134	63.12	62.777	63.69	0					40	20	3	0	0	0	0.28934	1	5658	5658		64.207	10.856	1	4619100			39742	4258	32797	32821	43152	43152					0.006119645752278302
NIHHMAII	8	Unmodified	_NIHHMAII_					0	0	0			REV__L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|186|3|sense	REV__L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|186|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.23834228515625	2	474.75783	947.501106	-0.42316	-0.0002009	1.3494	0.00064064	0.92625	0.00043974	474.7580846193375	43.398	0.12324	43.398	43.312	43.435	0					4	2	2	0	0	0	0.028476	1	2855	2855		13.775	0	1	20117	+		39743	28367	32798	32822	43153	43153					0.025255684651142474
NIHINILAI	9	Unmodified	_NIHINILAI_					0	0	0			REV__ENSG00000212127|ENST00000537503|TAS2R14	REV__ENSG00000212127|ENST00000537503|TAS2R14	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.8128662109375	2	510.813659	1019.61277	-2.1881	-0.0011177	1.9319	0.00098683	-0.25623	-0.00013089	510.814522374635	148.32	0.8961	146.88	146.63	147.52	-1.435					43	17	3	0	0	0	0.67509	1	14616	14616		23.042	5.6775	1	141170	+		39744	23247	32799	32823	43154	43154					0.10374326093892705
NIHIYGFSN	9	Unmodified	_NIHIYGFSN_					0	0	0			REV__L1MB3_dup1513|chr1:246270299-246273131:-|1.1805691521590191|0.3959605958472513|1.58|429.0|148|2|anti-sense	REV__L1MB3_dup1513|chr1:246270299-246273131:-|1.1805691521590191|0.3959605958472513|1.58|429.0|148|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	532.7627563476562	2	532.761623	1063.50869	-0.45972	-0.00024492	3.3096	0.0017632	2.8498	0.0015183	532.7632052598339	112.88	3.504	112.76	111.98	115.49	-0.12174					139	70	3	0	0	0	0.40667	1	10728	10728		51.335	14.176	1	216680	+		39745	28413	32800	32824	43155	43155					-0.020520007336017443
NIHLYITK	8	Unmodified	_NIHLYITK_					0	0	0		tr|A0A7D6ZG30|A0A7D6ZG30_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_20525PE=4SV=1	tr|A0A7D6ZG30|A0A7D6ZG30_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_20525PE=4SV=1	tr|A0A7D6ZG30|A0A7D6ZG30_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_20525PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	501.290283203125	2	501.292559	1000.57057	-1.4695	-0.00073667	-2.6975	-0.0013522	-4.167	-0.0020889	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.75241	1	11094	11094		25.45	0	1	97838			39746	35533	32801	32825	43156	43156					0.07030350685511166
NIHNLLLYP	9	Unmodified	_NIHNLLLYP_					0	0	0		chr2:26402144-26407596|329|22.86|0.34|6.06|+|1|TE_info:MER49,MER49_dup152,ERV1,LTR,acceptor,+,26407596,26408136|DRC1,None|7	chr2:26402144-26407596|329|22.86|0.34|6.06|+|1|TE_info:MER49,MER49_dup152,ERV1,LTR,acceptor,+,26407596,26408136|DRC1,None|7	chr2:26402144-26407596|329|22.86|0.34|6.06|+|1|TE_info:MER49,MER49_dup152,ERV1,LTR,acceptor,+,26407596,26408136|DRC1,None|7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.2814331054688	2	548.811116	1095.60768	-0.19615	-0.00010765	-3.6223	-0.001988	-3.8185	-0.0020956	548.8088953015539	116.43	0.55254	115.07	114.75	115.3	-1.3645					14	10	2	0	0	0	0.027462	1	10848	10848		38.806	5.2906	1	30411			39747	441	32802	32826	43157	43157					0.06370022231271832
NIHNLLLYP	9	Unmodified	_NIHNLLLYP_					0	0	0		chr2:26402144-26407596|329|22.86|0.34|6.06|+|1|TE_info:MER49,MER49_dup152,ERV1,LTR,acceptor,+,26407596,26408136|DRC1,None|7	chr2:26402144-26407596|329|22.86|0.34|6.06|+|1|TE_info:MER49,MER49_dup152,ERV1,LTR,acceptor,+,26407596,26408136|DRC1,None|7	chr2:26402144-26407596|329|22.86|0.34|6.06|+|1|TE_info:MER49,MER49_dup152,ERV1,LTR,acceptor,+,26407596,26408136|DRC1,None|7	MULTI-MATCH	OvCa9_classI_Rep2	2		2	548.811116	1095.60768	0.048948	2.6863E-05	-0.58394	-0.00032047	-0.53499	-0.00029361	548.8104090623525	114.85	0.5432	114.73	114.55	115.1	-0.11777	-0.20716	0.0013692	NaN	38.806	15	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16224			39748	441	32802	32826							0.06370022231271832
NIHNLLLYP	9	Unmodified	_NIHNLLLYP_					0	0	0		chr2:26402144-26407596|329|22.86|0.34|6.06|+|1|TE_info:MER49,MER49_dup152,ERV1,LTR,acceptor,+,26407596,26408136|DRC1,None|7	chr2:26402144-26407596|329|22.86|0.34|6.06|+|1|TE_info:MER49,MER49_dup152,ERV1,LTR,acceptor,+,26407596,26408136|DRC1,None|7	chr2:26402144-26407596|329|22.86|0.34|6.06|+|1|TE_info:MER49,MER49_dup152,ERV1,LTR,acceptor,+,26407596,26408136|DRC1,None|7	MULTI-MATCH	OvCa9_classI_Rep3	3		2	548.811116	1095.60768	-1.0242	-0.00056209	-2.0522	-0.0011263	-3.0764	-0.0016884	548.8098794349984	116.06	0.54242	115.02	114.8	115.34	-1.0414	0.080732	-0.00024238	NaN	38.806	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21012			39749	441	32802	32826							0.06370022231271832
NIHVWLLWFLR	11	Unmodified	_NIHVWLLWFLR_					0	0	0			REV__L1M4b_dup409|chr2:99315365-99316132:-|1.0427257755468466|0.2824116377342518|1.88|429.0|45|2|anti-sense	REV__L1M4b_dup409|chr2:99315365-99316132:-|1.0427257755468466|0.2824116377342518|1.88|429.0|45|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.82183837890625	3	499.622351	1495.84522	-0.50391	-0.00025176	2.3272	0.0011627	1.8233	0.00091097	499.95723304552223	48.095	0.17602	48.095	47.984	48.16	0					5	3	2	0	0	0	0.026448	1	3512	3512		9.2118	0.41249	1	64595	+		39750	28365	32803	32827	43158	43158					0.11713588164479916
NIIATLVK	8	Unmodified	_NIIATLVK_					0	0	0			REV__tr|A0A553SQ10|A0A553SQ10_NIACITranscriptionalregulatorLytROS=NialliacirculansOX=1397GN=CEQ21_15400PE=3SV=1	REV__tr|A0A553SQ10|A0A553SQ10_NIACITranscriptionalregulatorLytROS=NialliacirculansOX=1397GN=CEQ21_15400PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	436.28558349609375	2	436.284203	870.553853	3.2614	0.0014229	-0.65803	-0.00028709	2.6033	0.0011358	436.28379903538803	86.741	0.74623	86.741	86.511	87.257	0					33	17	3	0	0	0	0.62474	1	9151	9151		58.782	7.4465	1	3667300	+		39751	30595	32804	32828	43159	43159					0.11339849799583135
NIIATLVK	8	Unmodified	_NIIATLVK_					0	0	0			REV__tr|A0A553SQ10|A0A553SQ10_NIACITranscriptionalregulatorLytROS=NialliacirculansOX=1397GN=CEQ21_15400PE=3SV=1	REV__tr|A0A553SQ10|A0A553SQ10_NIACITranscriptionalregulatorLytROS=NialliacirculansOX=1397GN=CEQ21_15400PE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	436.284203	870.553853	3.2614	0.0014229	-0.65803	-0.00028709	2.6033	0.0011358	436.28379903538803	86.741	0.74623	86.741	86.511	87.257	0	0	0	NaN	58.782	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3667300	+		39752	30595	32804	32828							0.11339849799583135
NIICLVKPD	9	Unmodified	_NIICLVKPD_					0	0	0			REV__nc|ENSG00000166123|Q8TD30-2|GPT2	REV__nc|ENSG00000166123|Q8TD30-2|GPT2	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7886047363281	2	507.786253	1013.55795	-0.34924	-0.00017734	3.337	0.0016945	2.9877	0.0015171	507.78796796196445	47.165	1.8311	44.093	43.604	45.435	-3.0724					104	35	4	0	0	0	0.44568	1	2561	2561		47.657	8.4045	1	3261100	+		39753	21158	32805	32829	43160	43160					0.05171571230960126
NIIEEITED	9	Unmodified	_NIIEEITED_					0	0	0			REV__tr|A0A7D6ZUY4|A0A7D6ZUY4_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01635PE=4SV=1	REV__tr|A0A7D6ZUY4|A0A7D6ZUY4_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01635PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3080444335938	2	538.261319	1074.50808	0.59773	0.00032173	-1.9583	-0.0010541	-1.3606	-0.00073236	538.259660080935	160.45	0.35139	160.45	160.31	160.66	0					10	6	2	0	0	0	0.027462	1	18804	18804		34.173	0	1	29180	+		39754	32232	32806	32830	43161	43161					-0.026188849639765976
NIIELVHQV	9	Unmodified	_NIIELVHQV_					0	0	0		nc|ENSG00000165025|P43405-2|SYK;chr9:90802005-90843858|401|12.05|0.67|4.17|+|ENST00000375747|SYK,SYK;ENSG00000165025|ENST00000375754|SYK	nc|ENSG00000165025|P43405-2|SYK	nc|ENSG00000165025|P43405-2|SYK	MULTI-MSMS	OvCa99_classI_Rep5	1	532.8095703125	2	532.808574	1063.60259	2.2082	0.0011765	-0.32471	-0.00017301	1.8835	0.0010035	532.8083714548634	108.3	2.2397	108.3	108.03	110.27	0					124	50	5	0	0	0	0.0072874	3	12238	12233;12238;12263		190.26	85.515	1	10256000			39755	558	32807	32831	43162;43163;43164	43163					0.07333718368658992
NIIELVHQV	9	Unmodified	_NIIELVHQV_					0	0	0		nc|ENSG00000165025|P43405-2|SYK;chr9:90802005-90843858|401|12.05|0.67|4.17|+|ENST00000375747|SYK,SYK;ENSG00000165025|ENST00000375754|SYK	nc|ENSG00000165025|P43405-2|SYK	nc|ENSG00000165025|P43405-2|SYK	MULTI-MSMS	OvCa9_classI_Rep2	2	532.807861328125	2	532.808574	1063.60259	-0.89544	-0.0004771	0.36019	0.00019191	-0.53524	-0.00028518	532.8087564986685	108.82	1.879	108.59	108.32	110.2	-0.22498					103	37	3	0	0	0	0.017173	4	10206	10206;10212;10218;10225		150.36	59.992	1	513310			39756	558	32807	32831	43165;43166;43167;43168	43165					0.07333718368658992
NIIELVHQV	9	Unmodified	_NIIELVHQV_					0	0	0		nc|ENSG00000165025|P43405-2|SYK;chr9:90802005-90843858|401|12.05|0.67|4.17|+|ENST00000375747|SYK,SYK;ENSG00000165025|ENST00000375754|SYK	nc|ENSG00000165025|P43405-2|SYK	nc|ENSG00000165025|P43405-2|SYK	MULTI-MSMS	OvCa9_classI_Rep3	3	532.8075561523438	2	532.808574	1063.60259	0.51018	0.00027183	-1.0034	-0.00053462	-0.49323	-0.0002628	532.8080458030586	109.83	2.848	108.69	108.35	111.2	-1.1444					125	55	3	0	0	0	0.040625	3	7922	7910;7915;7922		126.24	46.792	1	628440			39757	558	32807	32831	43169;43170;43171	43171					0.07333718368658992
NIIELVHQV	9	Unmodified	_NIIELVHQV_					0	0	0		nc|ENSG00000165025|P43405-2|SYK;chr9:90802005-90843858|401|12.05|0.67|4.17|+|ENST00000375747|SYK,SYK;ENSG00000165025|ENST00000375754|SYK	nc|ENSG00000165025|P43405-2|SYK	nc|ENSG00000165025|P43405-2|SYK	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.8085327148438	2	532.808574	1063.60259	-0.1952	-0.000104	-0.44159	-0.00023528	-0.63679	-0.00033929	532.8083317879612	110.33	3.0173	108.73	108.38	111.4	-1.6011					119	57	3	0	0	0	0.027568	5	10160	10138;10149;10160;10176;10194		138.06	60.745	1	655860			39758	558	32807	32831	43172;43173;43174;43175;43176	43174					0.07333718368658992
NIIHSSPGR	9	Unmodified	_NIIHSSPGR_					0	0	0		tr|A0A7D6VSE9|A0A7D6VSE9_9CLOTBranched-chainaminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06255PE=4SV=1	tr|A0A7D6VSE9|A0A7D6VSE9_9CLOTBranched-chainaminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06255PE=4SV=1	tr|A0A7D6VSE9|A0A7D6VSE9_9CLOTBranched-chainaminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06255PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.2692565917969	2	490.76724	979.519927	-0.60789	-0.00029833	-4.0607	-0.0019929	-4.6686	-0.0022912	490.76522299630403	55.784	0.33278	55.784	55.599	55.932	0					16	7	3	0	0	0	0.027462	1	4606	4606		15.642	0	1	1376000			39759	35022	32808	32832	43177	43177					0.029348213605203455
NIIKTDGIEI	10	Unmodified	_NIIKTDGIEI_					0	0	0			REV__ENSG00000150893|ENST00000280481|FREM2	REV__ENSG00000150893|ENST00000280481|FREM2	MULTI-MSMS	OvCa99_classI_Rep5	1	558.3233642578125	2	558.318971	1114.62339	3.2979	0.0018413	3.7952	0.0021189	7.093	0.0039602	558.3209220000325	102.35	0.81023	102.35	102.12	102.93	0					54	18	4	0	0	0	0.43433	1	11401	11401		63.534	13.998	1	2183100	+		39760	20206	32809	32833	43178	43178					0.07066263957653973
NIIKTDGIEI	10	Unmodified	_NIIKTDGIEI_					0	0	0			REV__ENSG00000150893|ENST00000280481|FREM2	REV__ENSG00000150893|ENST00000280481|FREM2	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	558.318971	1114.62339	3.2979	0.0018413	3.7952	0.0021189	7.093	0.0039602	558.3209220000325	102.35	0.81023	102.35	102.12	102.93	0	-0.18432	6.668E-05	NaN	63.534	54	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2183100	+		39761	20206	32809	32833							0.07066263957653973
NIIKTDGIEI	10	Unmodified	_NIIKTDGIEI_					0	0	0			REV__ENSG00000150893|ENST00000280481|FREM2	REV__ENSG00000150893|ENST00000280481|FREM2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	558.318971	1114.62339	0.46389	0.000259	2.2952	0.0012815	2.7591	0.0015405	558.3211222314151	104.84	0.31416	102.72	102.48	102.8	-2.1192	0.18432	-0.0016082	NaN	63.534	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10020	+		39762	20206	32809	32833							0.07066263957653973
NIILMGFTI	9	Unmodified	_NIILMGFTI_					0	0	0			REV__tr|A0A7D6ZT77|A0A7D6ZT77_9CLOTMetalABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19035PE=4SV=1	REV__tr|A0A7D6ZT77|A0A7D6ZT77_9CLOTMetalABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19035PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	511.2920227050781	2	511.291171	1020.56779	1.722	0.00088046	0.10149	5.189E-05	1.8235	0.00093235	511.2911584831134	112.54	0.45245	112.54	112.2	112.66	0					20	9	3	0	0	0	0.40667	1	12818	12818		51.335	3.4199	1	258930	+		39763	32201	32810	32834	43179	43179					0.05832759236352558
NIINIQNSL	9	Unmodified	_NIINIQNSL_					0	0	0			REV__tr|A0A7D6ZMW1|A0A7D6ZMW1_9CLOTCachedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13700PE=3SV=1	REV__tr|A0A7D6ZMW1|A0A7D6ZMW1_9CLOTCachedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13700PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.7413330078125	2	514.790381	1027.56621	1.9928	0.0010259	-0.53863	-0.00027728	1.4542	0.00074861	514.7900196130348	85.904	0.64685	85.904	85.585	86.231	0					24	15	2	0	0	0	0.027448	1	9020	9020		44.117	0	1	1610600	+		39764	32112	32811	32835	43180	43180					0.05352841471949432
NIINIQNSL	9	Unmodified	_NIINIQNSL_					0	0	0			REV__tr|A0A7D6ZMW1|A0A7D6ZMW1_9CLOTCachedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13700PE=3SV=1	REV__tr|A0A7D6ZMW1|A0A7D6ZMW1_9CLOTCachedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13700PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.790381	1027.56621	1.0928	0.00056257	-1.2917	-0.00066494	-0.19887	-0.00010237	514.7895662735383	87.233	1.9534	85.802	85.069	87.022	-1.4311	-0.0025431	-0.0010831	NaN	44.117	54	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255230	+		39765	32112	32811	32835							0.05352841471949432
NIINIQNSL	9	Unmodified	_NIINIQNSL_					0	0	0			REV__tr|A0A7D6ZMW1|A0A7D6ZMW1_9CLOTCachedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13700PE=3SV=1	REV__tr|A0A7D6ZMW1|A0A7D6ZMW1_9CLOTCachedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13700PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	514.790381	1027.56621	-0.18205	-9.3715E-05	0.45076	0.00023205	0.26872	0.00013833	514.7904371047467	87.922	1.9121	85.758	85.048	86.96	-2.1644	-0.047204	0.00071087	NaN	44.117	58	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	469030	+		39766	32112	32811	32835							0.05352841471949432
NIINIQNSL	9	Unmodified	_NIINIQNSL_					0	0	0			REV__tr|A0A7D6ZMW1|A0A7D6ZMW1_9CLOTCachedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13700PE=3SV=1	REV__tr|A0A7D6ZMW1|A0A7D6ZMW1_9CLOTCachedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13700PE=3SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	514.790381	1027.56621	-2.2876	-0.0011776	2.3298	0.0011994	0.042235	2.1742E-05	514.7912900354381	88.358	1.694	85.756	85.228	86.922	-2.6027	-0.049249	0.0026455	NaN	44.117	57	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	454230	+		39767	32112	32811	32835							0.05352841471949432
NIIPRKPVR	9	Unmodified	_NIIPRKPVR_					0	0	0			REV__ENSG00000143126|ENST00000271332|CELSR2	REV__ENSG00000143126|ENST00000271332|CELSR2	MULTI-SECPEP	OvCa9_classI_Rep3	3	546.8113403320312	2	546.85365	1091.69275	-0.66609	-0.00036425	-0.89765	-0.00049089	-1.5637	-0.00085514	546.8530258624266	78.639	2.5	76.286	75.449	77.949	-2.3527					112	49	3	0	0	0	0.027418	1	4133	4133		68.787	19.345	1	126460	+		39768	19817	32812	32836	43181	43181					0.15056812487728166
NIIPRKPVR	9	Unmodified	_NIIPRKPVR_					0	0	0			REV__ENSG00000143126|ENST00000271332|CELSR2	REV__ENSG00000143126|ENST00000271332|CELSR2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.8125	2	546.85365	1091.69275	-0.6127	-0.00033505	-0.70438	-0.00038519	-1.3171	-0.00072025	546.8531387703529	79.157	1.5899	76.405	76.132	77.722	-2.7514					72	32	3	0	0	0	0.027462	1	6391	6391		55.504	13.108	1	224830	+		39769	19817	32812	32836	43182	43182					0.15056812487728166
NIIVEKVKI	9	Unmodified	_NIIVEKVKI_					0	0	0			REV__tr|A0A7D6ZXZ6|A0A7D6ZXZ6_9CLOTDegVfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00220PE=4SV=1	REV__tr|A0A7D6ZXZ6|A0A7D6ZXZ6_9CLOTDegVfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00220PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	527.3561401367188	2	528.344792	1054.67503	-1.4187	-0.00074957	1.1103	0.00058664	-0.30839	-0.00016294	528.3454116621447	85.085	0.58913	82.864	82.696	83.285	-2.2204					19	11	2	0	0	0	0.027462	1	4980	4980		27.882	0	1	35309	+		39770	32353	32813	32837	43183	43183					0.14988052442231492
NIIVMSLPVAR	11	Unmodified	_NIIVMSLPVAR_					0	0	0		nc|ENSG00000064651|P55011-3|SLC12A2;ENSG00000064651|ENST00000262461|SLC12A2	nc|ENSG00000064651|P55011-3|SLC12A2	nc|ENSG00000064651|P55011-3|SLC12A2	MULTI-SECPEP	OvCa99_classI_Rep5	1	607.3463745117188	2	606.860283	1211.70601	1.3591	0.00082476	-2.4784	-0.001504	-1.1193	-0.00067928	606.858347476302	123.58	0.5957	123.58	123.28	123.87	0					18	12	2	0	0	0	0.025551	1	14212	14212		45.022	35.839	1	62839			39771	1302	32814	32838	43184	43184					0.1086288248479832
NIKAAKRMVE	10	Unmodified	_NIKAAKRMVE_					0	0	0		tr|A0A7D6VP67|A0A7D6VP67_9CLOTDNA-directedRNApolymerasesubunitbeta'OS=ClostridiumintestinaleOX=36845GN=rpoCPE=3SV=1	tr|A0A7D6VP67|A0A7D6VP67_9CLOTDNA-directedRNApolymerasesubunitbeta'OS=ClostridiumintestinaleOX=36845GN=rpoCPE=3SV=1	tr|A0A7D6VP67|A0A7D6VP67_9CLOTDNA-directedRNApolymerasesubunitbeta'OS=ClostridiumintestinaleOX=36845GN=rpoCPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.7919921875	2	580.334433	1158.65431	1.2655	0.00073439	-1.7921	-0.00104	-0.52665	-0.00030563	580.333267285275	80.793	0.59138	80.793	80.529	81.12	0					33	13	3	0	0	0	0.026665	1	8278	8278		42.396	2.338	1	1445900			39772	34753	32815	32839	43185	43185					0.08133138790913108
NIKFKWEGNIQ	11	Unmodified	_NIKFKWEGNIQ_					0	0	0			REV__tr|A0A7D7AEV7|A0A7D7AEV7_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03805PE=4SV=1	REV__tr|A0A7D7AEV7|A0A7D7AEV7_9CLOTDUF4179domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03805PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.9031982421875	3	459.582221	1375.72483	0.10836	4.98E-05	0.32128	0.00014765	0.42964	0.00019745	459.5823717822938	31.435	0.19804	31.435	31.311	31.509	0					6	3	2	0	0	0	0.025864	1	1292	1292		28.577	16.144	1	25333	+		39773	32708	32816	32840	43186	43186					0.05200135380232496
NIKKLKDRA	9	Unmodified	_NIKKLKDRA_					0	0	0		HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|58|1|sense;nc|ENSG997|Q9N2J8|HERV-H-ENH3;nc|ENSG998|Q9N2K0|HERV-H-ENH1	HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|58|1|sense	HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|58|1|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	543.3431396484375	2	543.343115	1084.67168	-0.70379	-0.0003824	0.67825	0.00036852	-0.025544	-1.3879E-05	543.3433226435502	25.668	0.59908	25.668	25.493	26.092	0					22	11	3	0	0	0	0.14998	1	594	594		84.916	18.486	1	192080			39774	14432	32817	32841	43187	43187					0.13272802388246419
NIKLATLVSP	10	Unmodified	_NIKLATLVSP_					0	0	0			REV__tr|A0A7D6VNP2|A0A7D6VNP2_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_13730PE=3SV=1	REV__tr|A0A7D6VNP2|A0A7D6VNP2_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_13730PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	528.328857421875	2	528.326599	1054.63865	0.61734	0.00032616	2.9706	0.0015694	3.5879	0.0018956	528.3279822328798	127.76	3.0131	127.54	127.09	130.11	-0.22697					168	60	4	0	0	0	0.75313	1	12607	12607		24.519	0.31644	1	313700	+		39775	31197	32818	32842	43188	43188					0.11351175545519254
NIKLKMNQN	9	Unmodified	_NIKLKMNQN_					0	0	0			REV__tr|A0A553SQZ9|A0A553SQZ9_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00055PE=4SV=1	REV__tr|A0A553SQZ9|A0A553SQZ9_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00055PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.7464599609375	2	551.805508	1101.59646	0.33514	0.00018493	3.3891	0.0018701	3.7243	0.0020551	551.8054051898913	122.74	0.64458	121.37	121.06	121.7	-1.3666					16	12	2	0	0	0	0.027433	1	11590	11590		60.972	0	1	11282	+		39776	30675	32819	32843	43189	43189					0.04972876865485887
NIKLLPQLH	9	Unmodified	_NIKLLPQLH_					0	0	0			REV__ENSG00000257093|ENST00000536163|DENND11	REV__ENSG00000257093|ENST00000536163|DENND11	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.788818359375	2	538.334759	1074.65496	0.2287	0.00012312	-0.24297	-0.0001308	-0.014264	-7.6789E-06	538.3345405723508	57.754	0.63117	57.754	57.396	58.027	0					31	14	3	0	0	0	0.027462	1	4858	4858		17.365	0	1	979500	+		39777	23543	32820	32844	43190	43190					0.12062301502282935
NIKNAKDL	8	Unmodified	_NIKNAKDL_					0	0	0			REV__tr|A0A553STA0|A0A553STA0_NIACIDUF4163domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04575PE=4SV=1	REV__tr|A0A553STA0|A0A553STA0_NIACIDUF4163domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04575PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.7326965332031	2	458.266542	914.51853	0.26389	0.00012093	0.29171	0.00013368	0.5556	0.00025462	458.26677655576964	45.19	0.74583	45.19	44.795	45.54	0					23	16	3	0	0	0	0.028476	1	3058	3058		90.777	3.0224	1	128410	+		39778	30935	32821	32845	43191	43191					0.05785187271760606
NIKQLINFE	9	Unmodified	_NIKQLINFE_					0	0	0			REV__ENSG00000173572|ENST00000342929|NLRP13	REV__ENSG00000173572|ENST00000342929|NLRP13	MULTI-MSMS	OvCa99_classI_Rep5	1	559.8180541992188	2	559.813856	1117.61316	2.0742	0.0011611	3.1356	0.0017553	5.2097	0.0029165	559.8156915922438	133.1	8.2265	133.1	132.6	140.83	0					464	175	6	0	0	0	0.44568	1	16195	16195		47.657	3.5405	1	47573000	+		39779	21785	32822	32846	43192	43192					0.05905701023084475
NIKVRNWLNK	10	Unmodified	_NIKVRNWLNK_					0	0	0			REV__tr|A0A7D6ZE49|A0A7D6ZE49_9CLOTChromateeffluxtransporterOS=ClostridiumintestinaleOX=36845GN=chrAPE=3SV=1	REV__tr|A0A7D6ZE49|A0A7D6ZE49_9CLOTChromateeffluxtransporterOS=ClostridiumintestinaleOX=36845GN=chrAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	643.3739624023438	2	642.880396	1283.74624	-0.16689	-0.00010729	-0.034918	-2.2448E-05	-0.20181	-0.00012974	642.8804185491929	91.679	1.0111	89.137	88.862	89.873	-2.5425					40	19	3	0	0	0	0.026802	1	8011	8011		26.693	0	1	88407	+		39780	31939	32823	32847	43193	43193					0.11571565199619727
NILAWLNT	8	Unmodified	_NILAWLNT_					0	0	0			REV__nc|ENSG00000243708|P0C869-8|PLA2G4B	REV__nc|ENSG00000243708|P0C869-8|PLA2G4B	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.301025390625	2	472.763635	943.512717	-0.29593	-0.0001399	-3.0415	-0.0014379	-3.3374	-0.0015778	472.761571090644	48.099	0.64686	48.099	47.854	48.501	0					31	14	4	0	0	0	0.028476	1	3524	3524		38.806	16.846	1	430500	+		39781	29161	32824	32848	43194	43194					0.03870088760083945
NILDLKGDNNM	11	Unmodified	_NILDLKGDNNM_					0	0	0			REV__tr|A0A7D6VVL2|A0A7D6VVL2_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11700PE=3SV=1	REV__tr|A0A7D6VVL2|A0A7D6VVL2_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11700PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	623.8101196289062	2	623.808445	1245.60234	1.2528	0.00078154	0.57135	0.00035641	1.8242	0.001138	623.8086073578006	133.04	1.7337	133.04	132.6	134.34	0					70	36	4	0	0	0	0.6112	1	15496	15496		43.651	6.4917	1	1236500	+		39782	31723	32825	32849	43195	43195					-0.010640694134963269
NILEIVKP	8	Unmodified	_NILEIVKP_					0	0	0		ENSG00000154727|ENST00000400075|GABPA;ENST00000419271.1_1_7:63353684-63354623:+|nuORF;ENST00000487266.1_1_21:27107719-27124637:+|nuORF	ENSG00000154727|ENST00000400075|GABPA	ENSG00000154727|ENST00000400075|GABPA	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.2781677246094	2	463.289485	924.564418	0.31299	0.00014501	0.30981	0.00014353	0.6228	0.00028854	463.2894526780319	82.464	0.91953	80.865	80.54	81.46	-1.5989					31	17	2	0	0	0	0.028476	1	7053	7053		38.806	8.3025	1	49603			39783	5749	32826	32850	43196	43196					0.09911832453997249
NILELIGLI	9	Unmodified	_NILELIGLI_					0	0	0			REV__tr|A0A7D6VUX7|A0A7D6VUX7_9CLOTManganeseeffluxpumpOS=ClostridiumintestinaleOX=36845GN=HZF06_08765PE=4SV=1	REV__tr|A0A7D6VUX7|A0A7D6VUX7_9CLOTManganeseeffluxpumpOS=ClostridiumintestinaleOX=36845GN=HZF06_08765PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	499.3189392089844	2	499.318243	996.621933	0.47498	0.00023717	-0.10118	-5.0519E-05	0.37381	0.00018665	499.31803108412817	160.7	0.45338	160.7	160.45	160.91	0					18	8	3	0	0	0	0.48324	1	18837	18837		44.117	0	1	84839	+		39784	31699	32827	32851	43197	43197					0.12348674659574499
NILESFTTI	9	Unmodified	_NILESFTTI_					0	0	0		tr|A0A553SNL6|A0A553SNL6_NIACI3'-phosphate/5'-hydroxynucleicacidligaseOS=NialliacirculansOX=1397GN=CEQ21_24700PE=4SV=1	tr|A0A553SNL6|A0A553SNL6_NIACI3'-phosphate/5'-hydroxynucleicacidligaseOS=NialliacirculansOX=1397GN=CEQ21_24700PE=4SV=1	tr|A0A553SNL6|A0A553SNL6_NIACI3'-phosphate/5'-hydroxynucleicacidligaseOS=NialliacirculansOX=1397GN=CEQ21_24700PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.3335571289062	2	519.279315	1036.54408	0.62807	0.00032614	0.98191	0.00050989	1.61	0.00083603	519.2797073384129	139.28	0.58124	139.28	138.88	139.46	0					17	11	2	0	0	0	0.027462	1	16254	16254		25.574	0	1	43057			39785	33937	32828	32852	43198	43198					0.027266170035318282
NILEVIRTPI	10	Unmodified	_NILEVIRTPI_					0	0	0		ENST00000602573.1_1_4:119200795-119200927:+|nuORF	ENST00000602573.1_1_4:119200795-119200927:+|nuORF	ENST00000602573.1_1_4:119200795-119200927:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	584.356201171875	2	584.358431	1166.70231	-1.5993	-0.00093456	-2.1025	-0.0012286	-3.7018	-0.0021632	584.3570635109503	141.67	3.7966	141.44	139.5	143.3	-0.22697					141	76	3	0	0	0	0.77834	1	14178	14178		21.686	1.689	1	51857			39786	14240	32829	32853	43199	43199					0.1256253598260173
NILGPRVPLT	10	Unmodified	_NILGPRVPLT_					0	0	0		SCAP-SMARCC1|1|fusion;ENSG00000173473|ENST00000254480|SMARCC1	SCAP-SMARCC1|1|fusion	SCAP-SMARCC1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3318481445312	2	540.332216	1078.64988	0.34656	0.00018726	-4.1131	-0.0022225	-3.7666	-0.0020352	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.5675	1	13547	13547		45.972	10.354	1	342200			39787	7382	32830	32854	43200	43200					0.11369997639667417
NILIKAPYDK	10	Unmodified	_NILIKAPYDK_					0	0	0			REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4	REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.8131103515625	2	587.845156	1173.67576	1.0074	0.00059217	0.74522	0.00043807	1.7526	0.0010302	587.8454253336256	124.49	0.46063	124.49	124.28	124.74	0					14	8	2	0	0	0	0.026826	1	14348	14348		44.377	7.2181	1	90519	+		39788	20503	32831	32855	43201	43201					0.09586847091259187
NILIKNVIPK	10	Unmodified	_NILIKNVIPK_					0	0	0		tr|A0A7D6ZXX3|A0A7D6ZXX3_9CLOTUDP-N-acetylglucosamine1-carboxyvinyltransferaseOS=ClostridiumintestinaleOX=36845GN=murAPE=3SV=1	tr|A0A7D6ZXX3|A0A7D6ZXX3_9CLOTUDP-N-acetylglucosamine1-carboxyvinyltransferaseOS=ClostridiumintestinaleOX=36845GN=murAPE=3SV=1	tr|A0A7D6ZXX3|A0A7D6ZXX3_9CLOTUDP-N-acetylglucosamine1-carboxyvinyltransferaseOS=ClostridiumintestinaleOX=36845GN=murAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	576.78759765625	2	576.379166	1150.74378	-0.92944	-0.00053571	0.63088	0.00036363	-0.29856	-0.00017208	576.3794572888078	104.19	0.78691	102.07	101.9	102.69	-2.1192					20	14	2	0	0	0	0.026915	1	9436	9436		35.618	0	1	17655			39789	35897	32832	32856	43202	43202					0.174437167419228
NILILHKIL	9	Unmodified	_NILILHKIL_					0	0	0		ENST00000252108.7_1_11:118268072-118268138:+|nuORF	ENST00000252108.7_1_11:118268072-118268138:+|nuORF	ENST00000252108.7_1_11:118268072-118268138:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	538.8628540039062	2	538.863152	1075.71175	0.50313	0.00027112	-1.3946	-0.0007515	-0.89148	-0.00048038	538.8625358740957	133.13	11.263	132	131.63	142.9	-1.1249					494	228	5	0	0	0	0.34496	3	10875	10826;10856;10875		57.811	2.3071	1	10229000			39790	9801	32833	32857	43203;43204;43205	43205					0.17692349058779655
NILITLVKA	9	Unmodified	_NILITLVKA_					0	0	0			REV__nc|ENSG00000070614|P52848-3|NDST1	REV__nc|ENSG00000070614|P52848-3|NDST1	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.82794189453125	2	492.826235	983.637917	-1.5656	-0.00077155	1.1994	0.00059111	-0.36613	-0.00018044	492.8266078433632	107.46	1.3422	105.58	105.17	106.51	-1.8785					52	26	4	0	0	0	0.3076	1	9808	9808		62.107	3.8775	1	355090	+		39791	16885	32834	32858	43206	43206					0.1454438089647283
NILITLVKA	9	Unmodified	_NILITLVKA_					0	0	0			REV__nc|ENSG00000070614|P52848-3|NDST1	REV__nc|ENSG00000070614|P52848-3|NDST1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	492.826235	983.637917	0.2664	0.00013129	-1.0561	-0.00052048	-0.78971	-0.00038919	492.82561607341296	105.84	1.3463	105.4	105.1	106.44	-0.43642	-0.12222	-0.00072538	NaN	62.107	53	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	319260	+		39792	16885	32834	32858							0.1454438089647283
NILITLVKA	9	Unmodified	_NILITLVKA_					0	0	0			REV__nc|ENSG00000070614|P52848-3|NDST1	REV__nc|ENSG00000070614|P52848-3|NDST1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	492.826235	983.637917	0.15833	7.8028E-05	-0.42827	-0.00021106	-0.26994	-0.00013304	492.8258124960702	106.86	1.1441	105.59	105.27	106.41	-1.267	0.068237	-0.00010655	NaN	62.107	52	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	432810	+		39793	16885	32834	32858							0.1454438089647283
NILKAMKSAE	10	Unmodified	_NILKAMKSAE_					0	0	0		nc|ENSG00000129493|Q86XA9-2|HEATR5A;nc|ENSG00000129493|Q86XA9|HEATR5A;ENSG00000129493|ENST00000543095|HEATR5A;ENST00000549185.5_3_14:31803609-31872202:-|nuORF	nc|ENSG00000129493|Q86XA9-2|HEATR5A	nc|ENSG00000129493|Q86XA9-2|HEATR5A	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.73974609375	2	552.807716	1103.60088	-1.0513	-0.00058118	-2.9298	-0.0016196	-3.9811	-0.0022008	552.8063382711604	36.79	0.76279	36.79	36.442	37.205	0					22	16	2	0	0	0	0.026956	1	1991	1991		26.693	4.733	1	103530			39794	3931	32835	32859	43207	43207					0.05322341288388088
NILKENLIRAP	11	Unmodified	_NILKENLIRAP_					0	0	0		tr|A0A7D6ZIM1|A0A7D6ZIM1_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07615PE=3SV=1	tr|A0A7D6ZIM1|A0A7D6ZIM1_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07615PE=3SV=1	tr|A0A7D6ZIM1|A0A7D6ZIM1_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07615PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	640.8904418945312	2	640.887887	1279.76122	-0.17161	-0.00010998	3.4108	0.002186	3.2392	0.002076	640.8899625944715	132.12	1.093	131	130.64	131.73	-1.1249					68	21	4	0	0	0	0.70761	1	10550	10550		27.047	0	1	271940			39795	35621	32836	32860	43208	43208					0.13253012276936715
NILKIINNN	9	Unmodified	_NILKIINNN_					0	0	0		nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-3|RYR3	nc|ENSG00000198838|Q15413-2|RYR3	nc|ENSG00000198838|Q15413-2|RYR3	MULTI-SECPEP	OvCa9_classI_Rep3	3	527.7646484375	2	528.314023	1054.61349	-1.6149	-0.00085318	0.5086	0.0002687	-1.1063	-0.00058448	528.3140112208074	92.375	1.6346	90.35	90.135	91.77	-2.0241					55	33	3	0	0	0	0.027462	1	5852	5852		29.15	4.6304	1	687760			39796	8886	32837	32861	43209	43209					0.08837120742964544
NILKQKNEE	9	Unmodified	_NILKQKNEE_					0	0	0		ENST00000536245.1_1_6:144098468-144110182:+|nuORF;nc|ENSG00000112419|O75167-5|PHACTR2;nc|ENSG00000112419|O75167-2|PHACTR2;nc|ENSG00000112419|O75167|PHACTR2;ENSG00000112419|ENST00000440869|PHACTR2	ENST00000536245.1_1_6:144098468-144110182:+|nuORF	ENST00000536245.1_1_6:144098468-144110182:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.2920532226562	2	558.306395	1114.59824	1.5507	0.00086574	1.2414	0.00069309	2.7921	0.0015588	558.3074152528196	123.55	0.69044	123.55	123.18	123.87	0					27	14	3	0	0	0	0.027462	1	14288	14288		34.173	12.47	1	131320			39797	2905	32838	32862	43210	43210					0.04552209155099263
NILLASFPI	9	Unmodified	_NILLASFPI_					0	0	0			REV__tr|A0A7D6ZH49|A0A7D6ZH49_9CLOTDHA2familyeffluxMFStransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_01470PE=3SV=1	REV__tr|A0A7D6ZH49|A0A7D6ZH49_9CLOTDHA2familyeffluxMFStransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_01470PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	494.29559326171875	2	494.29731	986.580068	-1.1483	-0.00056758	-3.9925	-0.0019735	-5.1407	-0.0025411	494.2953202394874	91.548	1.6915	89.524	88.624	90.315	-2.0241					95	33	4	0	0	0	0.31747	1	5779	5779		60.972	0	1	2048800	+		39798	32016	32839	32863	43211	43211					0.08624118971033568
NILLKRIN	8	Unmodified	_NILLKRIN_					0	0	0			REV__tr|A0A7D6VYX2|A0A7D6VYX2_9CLOTYgiT-typezincfingerproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18065PE=4SV=1	REV__tr|A0A7D6VYX2|A0A7D6VYX2_9CLOTYgiT-typezincfingerproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18065PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.2994079589844	2	492.321651	982.62875	-0.09277	-4.5672E-05	3.272	0.0016109	3.1792	0.0015652	492.32346100626626	99.137	0.25916	96.812	96.588	96.847	-2.3253					8	4	3	0	0	0	0.028476	1	8830	8830		31.955	9.995	1	37625	+		39799	31828	32840	32864	43212	43212					0.13674032330789032
NILLQTYIS	9	Unmodified	_NILLQTYIS_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	OvCa99_classI_Rep5	1	532.803466796875	2	532.802957	1063.59136	-0.40639	-0.00021653	-0.30299	-0.00016143	-0.70938	-0.00037796	532.8027714700471	54.439	1.3511	54.439	54.089	55.44	0					86	31	5	0	0	0	0.42676	1	4442	4442		49.442	1.7842	1	16244000			39800	2891	32841	32865	43213	43213					0.062108962745242025
NILNDFTLD	9	Unmodified	_NILNDFTLD_					0	0	0		UMPS|p.D285N|1|0.09|ENSG00000114491|chr3:124738110-124738110|G/A|missense_variant	UMPS|p.D285N|1|0.09|ENSG00000114491|chr3:124738110-124738110|G/A|missense_variant	UMPS|p.D285N|1|0.09|ENSG00000114491|chr3:124738110-124738110|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.763916015625	2	532.766571	1063.51859	-2.1899	-0.0011667	-3.8672	-0.0020603	-6.057	-0.003227	532.7643655204938	118.83	2.191	117.49	115.84	118.03	-1.3444					91	41	4	0	0	0	0.42576	1	11170	11170		49.536	5.1589	1	175550			39801	36291	32842	32866	43214	43214					-0.010628575189002731
NILNWKERTL	10	Unmodified	_NILNWKERTL_					0	0	0		ENSG00000103184|ENST00000251170|SEC14L5	ENSG00000103184|ENST00000251170|SEC14L5	ENSG00000103184|ENST00000251170|SEC14L5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	429.7645568847656	3	429.5787	1285.71427	0.35132	0.00015092	0.29633	0.0001273	0.64765	0.00027822	429.5788157616366	103.3	0.46774	101.1	100.83	101.3	-2.1994					13	8	2	0	0	0	0.027142	1	9311	9311		15.333	2.9003	1	9355.2			39802	2291	32843	32867	43215	43215					0.08284152725786953
NILPFMAFV	9	Unmodified	_NILPFMAFV_					0	0	0		tr|A0A553SM90|A0A553SM90_NIACIPTSsorbitoltransportersubunitIIBOS=NialliacirculansOX=1397GN=CEQ21_22055PE=4SV=1	tr|A0A553SM90|A0A553SM90_NIACIPTSsorbitoltransportersubunitIIBOS=NialliacirculansOX=1397GN=CEQ21_22055PE=4SV=1	tr|A0A553SM90|A0A553SM90_NIACIPTSsorbitoltransportersubunitIIBOS=NialliacirculansOX=1397GN=CEQ21_22055PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.3771362304688	2	526.285889	1050.55722	0.993	0.0005226	0.73733	0.00038805	1.7303	0.00091065	526.2841590687336	149.99	0.30225	149.99	149.84	150.14	0					7	5	2	0	0	0	0.027462	1	17569	17569		52.299	13.278	1	11808			39803	33812	32844	32868	43216	43216					0.03396776581917038
NILPGIMKED	10	Unmodified	_NILPGIMKED_					0	0	0		tr|A0A7D7A262|A0A7D7A262_9CLOTSpermidine/putrescineimportATP-bindingproteinPotAOS=ClostridiumintestinaleOX=36845GN=potAPE=3SV=1	tr|A0A7D7A262|A0A7D7A262_9CLOTSpermidine/putrescineimportATP-bindingproteinPotAOS=ClostridiumintestinaleOX=36845GN=potAPE=3SV=1	tr|A0A7D7A262|A0A7D7A262_9CLOTSpermidine/putrescineimportATP-bindingproteinPotAOS=ClostridiumintestinaleOX=36845GN=potAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.320556640625	2	565.299724	1128.5849	1.4126	0.00079855	0.48388	0.00027354	1.8965	0.0010721	565.300022750879	155.84	0.81589	155.84	155.48	156.29	0					17	15	2	0	0	0	0.026826	1	18297	18297		16.717	0	1	46769			39804	36065	32845	32869	43217	43217					0.025746350515191807
NILPLKAAS	9	Unmodified	_NILPLKAAS_					0	0	0		ENST00000475962.5_1_22:39516350-39545814:-|nuORF	ENST00000475962.5_1_22:39516350-39545814:-|nuORF	ENST00000475962.5_1_22:39516350-39545814:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.75311279296875	2	463.78711	925.559667	-0.97302	-0.00045127	-0.22479	-0.00010425	-1.1978	-0.00055553	463.786050097432	55.955	0.49557	53.151	53.027	53.523	-2.804					16	9	2	0	0	0	0.027462	1	3913	3913		31.53	14.165	1	46825			39805	12459	32846	32870	43218	43218					0.09390948311227021
NILPMYVR	8	Unmodified	_NILPMYVR_					0	0	0			REV__ENSG00000181718|ENST00000641661|OR5T2	REV__ENSG00000181718|ENST00000641661|OR5T2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.75799560546875	2	503.281137	1004.54772	-1.3412	-0.000675	-3.2311	-0.0016261	-4.5723	-0.0023011	503.78115655700884	53.632	1.2785	50.388	50.01	51.288	-3.2438					55	24	3	0	0	0	0.028476	1	3259	3259		33.516	3.0119	1	141000	+		39806	22245	32847	32871	43219	43219					0.0456300829639531
NILSELLEE	9	Unmodified	_NILSELLEE_					0	0	0			REV__ENSG00000174844|ENST00000495027|DNAH12	REV__ENSG00000174844|ENST00000495027|DNAH12	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.262939453125	2	530.282054	1058.54956	1.4176	0.00075174	1.6393	0.00086928	3.0569	0.001621	530.2820446465088	90.756	0.23977	90.756	90.577	90.816	0					7	5	2	0	0	0	0.027462	1	9736	9736		39.253	7.298	1	492240	+		39807	21856	32848	32872	43220	43220					0.02262295795344471
NILSMMLLGQ	10	Unmodified	_NILSMMLLGQ_					0	0	0		L1PB4_dup1466|chr4:19614553-19617282:+|1.566952962030771|0.0066926762288261|7.87|427.0|161|3|anti-sense	L1PB4_dup1466|chr4:19614553-19617282:+|1.566952962030771|0.0066926762288261|7.87|427.0|161|3|anti-sense	L1PB4_dup1466|chr4:19614553-19617282:+|1.566952962030771|0.0066926762288261|7.87|427.0|161|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	559.3217163085938	2	560.29867	1118.58279	0.58746	0.00032915	-1.6094	-0.00090173	-1.0219	-0.00057258	560.297751482357	110.72	0.64327	110.58	110.29	110.93	-0.13961					18	12	2	0	0	0	0.026867	1	10441	10441		35.152	3.6222	1	17353			39808	14789	32849	32873	43221	43221					0.02823883042037778
NILSMMLLGQ	10	Unmodified	_NILSMMLLGQ_					0	0	0		L1PB4_dup1466|chr4:19614553-19617282:+|1.566952962030771|0.0066926762288261|7.87|427.0|161|3|anti-sense	L1PB4_dup1466|chr4:19614553-19617282:+|1.566952962030771|0.0066926762288261|7.87|427.0|161|3|anti-sense	L1PB4_dup1466|chr4:19614553-19617282:+|1.566952962030771|0.0066926762288261|7.87|427.0|161|3|anti-sense	MULTI-MATCH	OvCa9_classI_Rep3	3		2	560.29867	1118.58279	0.90702	0.0005082	-1.9152	-0.0010731	-1.0082	-0.00056489	560.2973990497964	111.38	0.39651	110.28	110.15	110.55	-1.1038	-0.12312	0.00020148	NaN	35.152	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31368			39809	14789	32849	32873							0.02823883042037778
NILSTRILA	9	Unmodified	_NILSTRILA_					0	0	0		ENST00000264276.10_1_2:202591438-202591519:-|nuORF	ENST00000264276.10_1_2:202591438-202591519:-|nuORF	ENST00000264276.10_1_2:202591438-202591519:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.7947082519531	2	500.811116	999.60768	-0.50254	-0.00025168	-1.4593	-0.00073085	-1.9619	-0.00098252	500.8101055950194	109.38	0.57835	108.24	108.03	108.61	-1.1444					13	10	2	0	0	0	0.027418	1	7841	7841		71.877	18.941	1	9860.5			39810	9929	32850	32874	43222	43222					0.10786022231275183
NILSVSLFGF	10	Unmodified	_NILSVSLFGF_					0	0	0			REV__nc|ENSG00000104635|Q15043-3|SLC39A14	REV__nc|ENSG00000104635|Q15043-3|SLC39A14	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.7770385742188	2	548.8055	1095.59645	-0.67105	-0.00036827	3.5901	0.0019703	2.9191	0.001602	548.8080627496904	29.161	0.19978	29.161	29.037	29.237	0					5	3	2	0	0	0	0.027117	1	1007	1007		16.473	0	1	12422	+		39811	28780	32851	32875	43223	43223					0.052472001371370425
NILSVSLFGF	10	Unmodified	_NILSVSLFGF_					0	0	0			REV__nc|ENSG00000104635|Q15043-3|SLC39A14	REV__nc|ENSG00000104635|Q15043-3|SLC39A14	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	548.8055	1095.59645	0.36661	0.0002012	6.0328	0.0033108	6.3994	0.003512	548.8086539011326	31.509	1.022	28.978	28.574	29.596	-2.5308	-0.091766	7.7903E-05	NaN	23.042	57	38	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20104	+		39812	28780	32851	32875							0.052472001371370425
NILSYLDAR	9	Unmodified	_NILSYLDAR_					0	0	0		nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.80810546875	2	532.790381	1063.56621	-0.45677	-0.00024336	-1.1908	-0.00063447	-1.6476	-0.00087783	532.7896397724849	77.008	0.47075	74.636	74.505	74.976	-2.3715					10	8	2	0	0	0	0.023563	1	4037	4037		138.06	15.886	1	24501			39813	1480	32852	32876	43224	43224					0.036968414719467546
NILVMPIIP	9	Unmodified	_NILVMPIIP_					0	0	0			REV__ENSG00000077097|ENST00000264331|TOP2B;REV__ENSG00000131747|ENST00000423485|TOP2A	REV__ENSG00000077097|ENST00000264331|TOP2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.27398681640625	2	505.309364	1008.60417	3.0173	0.0015247	3.2616	0.0016481	6.2789	0.0031728	505.31073200494455	89.807	0.42022	89.807	89.6	90.02	0					22	9	4	0	0	0	0.027449	1	9632	9632		50.025	18.07	1	280740	+		39814	17003;19031	32853	32877	43225	43225					0.1002163613305811
NILVMPIIP	9	Unmodified	_NILVMPIIP_					0	0	0			REV__ENSG00000077097|ENST00000264331|TOP2B;REV__ENSG00000131747|ENST00000423485|TOP2A	REV__ENSG00000077097|ENST00000264331|TOP2B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.2704162597656	2	505.309364	1008.60417	-1.0572	-0.00053423	4.3612	0.0022037	3.3039	0.0016695	505.31141759817575	92.017	1.2155	89.474	89.162	90.377	-2.5425					52	23	3	0	0	0	0.027462	1	8019	8019		33.516	11.556	1	180770	+		39815	17003;19031	32853	32877	43226	43226					0.1002163613305811
NILVMPIIP	9	Unmodified	_NILVMPIIP_					0	0	0			REV__ENSG00000077097|ENST00000264331|TOP2B;REV__ENSG00000131747|ENST00000423485|TOP2A	REV__ENSG00000077097|ENST00000264331|TOP2B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	505.309364	1008.60417	1.0424	0.00052675	1.9724	0.00099668	3.0148	0.0015234	505.31028688472134	90.769	1.2848	89.467	89.028	90.312	-1.302	-0.089416	-0.0016428	NaN	31.955	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132770	+		39816	17003;19031	32853	32877							0.1002163613305811
NILVMPIIP	9	Unmodified	_NILVMPIIP_					0	0	0			REV__ENSG00000077097|ENST00000264331|TOP2B;REV__ENSG00000131747|ENST00000423485|TOP2A	REV__ENSG00000077097|ENST00000264331|TOP2B	MULTI-MATCH	OvCa9_classI_Rep3	3		2	505.309364	1008.60417	-1.4314	-0.00072332	4.5438	0.002296	3.1124	0.0015727	505.3115335955658	91.502	1.0556	89.478	89.079	90.135	-2.0241	-0.078491	0.00095592	NaN	31.955	46	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246570	+		39817	17003;19031	32853	32877							0.1002163613305811
NILVWSVI	8	Unmodified	_NILVWSVI_					0	0	0		ENSG00000204740|ENST00000454679|MALRD1	ENSG00000204740|ENST00000454679|MALRD1	ENSG00000204740|ENST00000454679|MALRD1	MULTI-MSMS	OvCa99_classI_Rep5	1	472.2841491699219	2	472.284203	942.553853	0.78663	0.00037151	-3.013	-0.001423	-2.2264	-0.0010515	472.28262047419315	101.47	0.97446	101.47	101.19	102.17	0					55	22	4	0	0	0	0.2826	1	11285	11285		110.34	3.922	1	3296300			39818	9027	32854	32878	43227	43227					0.08027849799555042
NILWNAAAQ	9	Unmodified	_NILWNAAAQ_					0	0	0			REV__ENSG00000153802|ENST00000283916|TMPRSS11D	REV__ENSG00000153802|ENST00000283916|TMPRSS11D	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.80462646484375	2	500.764166	999.513779	-0.82093	-0.00041109	3.4329	0.0017191	2.612	0.001308	500.7659326013166	50.443	0.48388	50.443	50.201	50.685	0					23	10	3	0	0	0	0.027455	1	3828	3828		34.173	6.2903	1	599260	+		39819	20346	32855	32879	43228	43228					0.01400303128991709
NILYKWNAS	9	Unmodified	_NILYKWNAS_					0	0	0			REV__ENSG00000187210|ENST00000376730|GCNT1	REV__ENSG00000187210|ENST00000376730|GCNT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.8416137695312	2	554.792924	1107.57129	2.127	0.0011801	4.0548	0.0022496	6.1819	0.0034297	554.7970608727356	74.881	0.65126	74.881	74.517	75.168	0					28	15	3	0	0	0	0.027448	1	7436	7436		20.947	0	1	1036100	+		39820	22635	32856	32880	43229	43229					0.021811453345662812
NIMDFKLFL	9	Unmodified	_NIMDFKLFL_					0	0	0		ENSG00000189362|ENST00000409150|NEMP2;nc|ENSG00000189362|A6NFY4-2|NEMP2;ENST00000343105.9_1_2:191381046-191390059:-|nuORF	ENSG00000189362|ENST00000409150|NEMP2	ENSG00000189362|ENST00000409150|NEMP2	MULTI-MSMS	OvCa99_classI_Rep5	1	570.8099975585938	2	570.809728	1139.6049	0.7843	0.00044769	1.2037	0.00068706	1.988	0.0011347	570.8103705688422	153.07	0.83847	153.07	152.85	153.69	0					37	16	4	0	0	0	0.2784	1	17946	17946		65.465	7.2355	1	289840			39821	8553	32857	32881	43230	43230					0.0406843078210386
NIMIESTEKNI	11	Unmodified	_NIMIESTEKNI_					0	0	0		tr|A0A7D6VRI7|A0A7D6VRI7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01615PE=4SV=1	tr|A0A7D6VRI7|A0A7D6VRI7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01615PE=4SV=1	tr|A0A7D6VRI7|A0A7D6VRI7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01615PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	430.7851257324219	3	431.223594	1290.64895	2.9857	0.0012875	3.4917	0.0015057	6.4774	0.0027932	431.2252154304926	96.417	0.24899	96.417	96.21	96.459	0					6	5	2	0	0	0	0.025457	1	10560	10560		25.892	1.6158	1	162250			39822	34935	32858	32882	43231	43231					0.015253704178121552
NIMSVNVPLM	10	Unmodified	_NIMSVNVPLM_					0	0	0		tr|A0A7D6ZNI9|A0A7D6ZNI9_9CLOTV-typeATPsynthasesubunitDOS=ClostridiumintestinaleOX=36845GN=atpDPE=3SV=1	tr|A0A7D6ZNI9|A0A7D6ZNI9_9CLOTV-typeATPsynthasesubunitDOS=ClostridiumintestinaleOX=36845GN=atpDPE=3SV=1	tr|A0A7D6ZNI9|A0A7D6ZNI9_9CLOTV-typeATPsynthasesubunitDOS=ClostridiumintestinaleOX=36845GN=atpDPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	559.2921142578125	2	559.290845	1116.56714	1.4761	0.00082555	-2.0931	-0.0011706	-0.617	-0.00034508	559.2895027146891	150.78	0.80963	150.78	150.59	151.4	0					24	15	3	0	0	0	0.52439	1	17674	17674		51.193	5.2204	1	111610			39823	35681	32859	32883	43232	43232					0.013515965250007866
NIMVFLVVLL	10	Unmodified	_NIMVFLVVLL_					0	0	0			REV__nc|ENSG00000140538|Q16288-2|NTRK3	REV__nc|ENSG00000140538|Q16288-2|NTRK3	MULTI-MSMS	OvCa9_classI_Rep2	2	580.8603515625	2	580.859221	1159.70389	-0.2089	-0.00012134	3.5624	0.0020693	3.3535	0.0019479	580.8611123258897	107.98	1.0318	107.76	107.44	108.47	-0.22498					59	20	4	0	0	0	0.64063	1	10111	10111		37.159	0.71236	1	208450	+		39824	19684	32860	32884	43233	43233					0.13042453747016225
NIMVHASLL	9	Unmodified	_NIMVHASLL_					0	0	0		nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.78973388671875	2	499.278595	996.542637	-0.66439	-0.00033172	-0.28716	-0.00014337	-0.95156	-0.00047509	499.2787491653125	115.29	0.24668	115.17	114.95	115.19	-0.11777					5	4	2	0	0	0	0.02741	1	10971	10971		51.335	0	1	14066			39825	7235	32861	32885	43234	43234					0.044227044337844745
NIMVVAGSPL	10	Unmodified	_NIMVVAGSPL_					0	0	0		nc|ENSG00000100167|Q9UH03-3|SEPTIN3	nc|ENSG00000100167|Q9UH03-3|SEPTIN3	nc|ENSG00000100167|Q9UH03-3|SEPTIN3	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.7947082519531	2	500.778428	999.542302	-0.45319	-0.00022695	-1.4321	-0.00071715	-1.8853	-0.0009441	500.77764310592056	109.28	1.4714	108.13	107.93	109.4	-1.1444					46	27	2	0	0	0	0.026493	1	7841	7841		54.776	0	1	72840			39826	14924	32862	32886	43235	43235					0.042512847139278165
NIMVVAGSPL	10	Unmodified	_NIMVVAGSPL_					0	0	0		nc|ENSG00000100167|Q9UH03-3|SEPTIN3	nc|ENSG00000100167|Q9UH03-3|SEPTIN3	nc|ENSG00000100167|Q9UH03-3|SEPTIN3	MULTI-MATCH	OvCa99_classI_Rep5	1		2	500.778428	999.542302	2.4567	0.0012303	-3.7968	-0.0019014	-1.3402	-0.00067112	500.77645185505634	108.04	0.63676	108.04	107.77	108.41	0	-0.081372	-0.0013291	NaN	54.776	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	435640			39827	14924	32862	32886							0.042512847139278165
NINAAFKVMQ	10	Unmodified	_NINAAFKVMQ_					0	0	0			REV__DARS-R3HDM1|1|fusion	REV__DARS-R3HDM1|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	568.3092041015625	2	568.300059	1134.58556	-1.7379	-0.00098764	-0.78663	-0.00044704	-2.5245	-0.0014347	568.299282800817	107.99	0.63338	106.11	105.88	106.51	-1.8785					20	12	3	0	0	0	0.026956	1	9846	9846		26.693	0	1	68992	+		39828	16267	32863	32887	43236	43236					0.023654744911937087
NINEAMATR	9	Unmodified	_NINEAMATR_					0	0	0		ENSG00000116991|ENST00000674635|SIPA1L2	ENSG00000116991|ENST00000674635|SIPA1L2	ENSG00000116991|ENST00000674635|SIPA1L2	MULTI-SECPEP	OvCa9_classI_Rep2	2	509.8208923339844	2	510.250566	1018.48658	-0.3464	-0.00017675	-3.8797	-0.0019796	-4.2261	-0.0021564	510.2484361023064	122.56	0.64146	122.34	122.07	122.71	-0.21803					19	12	2	0	0	0	0.027455	1	11848	11848		60.972	2.19	1	32874			39829	3226	32864	32888	43237	43237					-0.021925484736925682
NINELCLLQ	9	Unmodified	_NINELCLLQ_					0	0	0		ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	MULTI-MSMS	OvCa9_classI_Rep2	2	530.2783203125	2	530.278792	1058.54303	-1.1806	-0.00062605	1.1266	0.00059742	-0.053987	-2.8628E-05	530.2791627233665	122.04	1.4342	121.82	121.08	122.51	-0.21803					61	28	3	0	0	0	0.35444	1	11821	11821		56.721	6.6965	1	120110			39830	7413	32865	32889	43238	43238					0.016100793629675536
NINFQQKKWTL	11	Unmodified	_NINFQQKKWTL_					0	0	0		ENST00000472131.5_1_1:15653545-15656069:+|nuORF;ENST00000459961.1_1_1:15653545-15655159:+|nuORF;nc|ENSG00000142621|B1AJZ9-4|FHAD1;nc|ENSG00000142621|B1AJZ9|FHAD1;nc|ENSG00000142621|B1AJZ9-3|FHAD1;ENSG00000142621|ENST00000688493|FHAD1	ENST00000472131.5_1_1:15653545-15656069:+|nuORF	ENST00000472131.5_1_1:15653545-15656069:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	473.927734375	3	473.929621	1418.76703	-6.0595	-0.0028718	4.1974	0.0019893	-1.8621	-0.00088251	473.93111268931267	162.59	1.1094	161.2	160.75	161.85	-1.3925					55	23	4	0	0	0	0.72497	1	14148	14148		15.921	2.4127	1	97868			39831	4985	32866	32890	43239	43239					0.07440110788616039
NINGDLGK	8	Unmodified	_NINGDLGK_					0	0	0		tr|A0A7D7A2L4|A0A7D7A2L4_9CLOTSignaltransductionhistidinekinasesubgroup3dimerisationandphosphoacceptordomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20510PE=4SV=1	tr|A0A7D7A2L4|A0A7D7A2L4_9CLOTSignaltransductionhistidinekinasesubgroup3dimerisationandphosphoacceptordomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20510PE=4SV=1	tr|A0A7D7A2L4|A0A7D7A2L4_9CLOTSignaltransductionhistidinekinasesubgroup3dimerisationandphosphoacceptordomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20510PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	415.7216796875	2	415.721967	829.429381	1.7526	0.00072857	-1.9593	-0.00081452	-0.20674	-8.5945E-05	415.72103499680065	120.01	1.8058	118.98	118.63	120.43	-1.0271					63	35	3	0	0	0	0.74754	1	9164	9164		27.882	1.1893	1	271890			39832	36084	32867	32891	43240	43240					0.007843523122460283
NINIREIL	8	Unmodified	_NINIREIL_					0	0	0		tr|A0A7D6W0Z7|A0A7D6W0Z7_9CLOTHlyC/CorCfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_01725PE=3SV=1	tr|A0A7D6W0Z7|A0A7D6W0Z7_9CLOTHlyC/CorCfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_01725PE=3SV=1	tr|A0A7D6W0Z7|A0A7D6W0Z7_9CLOTHlyC/CorCfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_01725PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	492.79559326171875	2	492.795466	983.57638	1.6731	0.00082449	0.18222	8.9798E-05	1.8553	0.00091428	492.7955325530773	81.934	0.6101	81.934	81.654	82.264	0					27	14	2	0	0	0	0.67872	1	8461	8461		47.657	1.6851	1	959060			39833	35395	32868	32892	43241	43241					0.08393449197183145
NINLGEEVRAP	11	Unmodified	_NINLGEEVRAP_					0	0	0			REV__ENST00000483359.5_1_20:34220178-34252711:-|nuORF	REV__ENST00000483359.5_1_20:34220178-34252711:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	605.8018188476562	2	606.322576	1210.6306	2.7502	0.0016675	3.6181	0.0021938	6.3684	0.0038613	606.3244633659498	96.385	0.79836	96.385	96.168	96.966	0					21	18	2	0	0	0	0.025604	1	10595	10595		42.338	15.291	1	389870	+		39834	26523	32869	32893	43242	43242					0.03370996558101069
NINPLKSIQ	9	Unmodified	_NINPLKSIQ_					0	0	0			REV__tr|A0A7D6W158|A0A7D6W158_9CLOTAlanineracemaseOS=ClostridiumintestinaleOX=36845GN=alrPE=3SV=1	REV__tr|A0A7D6W158|A0A7D6W158_9CLOTAlanineracemaseOS=ClostridiumintestinaleOX=36845GN=alrPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	513.800537109375	2	513.800749	1025.58694	-0.42478	-0.00021825	0.60446	0.00031057	0.17967	9.2317E-05	513.8008270451663	29.666	0.70024	29.666	29.486	30.186	0					28	13	3	0	0	0	0.27001	1	1080	1080		66.429	9.7082	1	290710	+		39835	31877	32870	32894	43243	43243					0.07517431851601941
NINPLKSIQ	9	Unmodified	_NINPLKSIQ_					0	0	0			REV__tr|A0A7D6W158|A0A7D6W158_9CLOTAlanineracemaseOS=ClostridiumintestinaleOX=36845GN=alrPE=3SV=1	REV__tr|A0A7D6W158|A0A7D6W158_9CLOTAlanineracemaseOS=ClostridiumintestinaleOX=36845GN=alrPE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	513.800749	1025.58694	-0.42478	-0.00021825	0.60446	0.00031057	0.17967	9.2317E-05	513.8008270451663	29.666	0.70024	29.666	29.486	30.186	0	0.12299	0.0034044	NaN	66.429	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	290710	+		39836	31877	32870	32894							0.07517431851601941
NINSETFKV	9	Unmodified	_NINSETFKV_					0	0	0			REV__tr|A0A7D6VY71|A0A7D6VY71_9CLOTRNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14635PE=4SV=1	REV__tr|A0A7D6VY71|A0A7D6VY71_9CLOTRNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14635PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.8308715820312	2	526.274564	1050.53457	2.3484	0.0012359	-0.27683	-0.00014569	2.0716	0.0010902	526.274407663429	75.263	0.39522	75.263	75.087	75.482	0					20	9	3	0	0	0	0.027447	1	7464	7464		47.657	0	1	931900	+		39837	31810	32871	32895	43244	43244					0.011328487179980584
NINSVPCDKK	10	Unmodified	_NINSVPCDKK_					0	0	0			REV__ENSG00000138756|ENST00000502613|BMP2K	REV__ENSG00000138756|ENST00000502613|BMP2K	MULTI-MSMS	OvCa9_classI_Rep3	3	559.2874755859375	2	559.287148	1116.55974	1.8335	0.0010255	-1.8144	-0.0010148	0.019083	1.0673E-05	559.285935160322	57.961	2.4261	54.834	53.92	56.346	-3.1264					105	62	3	0	0	0	0.79917	1	1813	1813		19.104	0.84144	1	45402	+		39838	19567	32872	32896	43245	43245					0.006125802489123089
NINVNMKEF	9	Unmodified	_NINVNMKEF_					0	0	0			REV__tr|A0A7D7A537|A0A7D7A537_9CLOTChaperoneproteinClpBOS=ClostridiumintestinaleOX=36845GN=clpBPE=3SV=1	REV__tr|A0A7D7A537|A0A7D7A537_9CLOTChaperoneproteinClpBOS=ClostridiumintestinaleOX=36845GN=clpBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.3452758789062	2	554.776416	1107.53828	1.8588	0.0010312	1.7045	0.00094563	3.5634	0.0019769	554.7766750408421	125.73	1.8611	125.73	125.37	127.23	0					81	41	4	0	0	0	0.027137	1	14618	14618		87.696	32.192	1	508960	+		39839	32625	32873	32897	43246	43246					-0.011188047797986655
NINYKNID	8	Unmodified	_NINYKNID_					0	0	0		tr|A0A7D6ZRS4|A0A7D6ZRS4_9CLOTDUF1819familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13325PE=4SV=1	tr|A0A7D6ZRS4|A0A7D6ZRS4_9CLOTDUF1819familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13325PE=4SV=1	tr|A0A7D6ZRS4|A0A7D6ZRS4_9CLOTDUF1819familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13325PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	496.2954406738281	2	497.253631	992.49271	-1.0925	-0.00054324	1.1816	0.00058754	0.089102	4.4306E-05	497.2540730275352	87.123	1.0224	84.946	84.683	85.706	-2.1768					40	19	3	0	0	0	0.028476	1	5297	5297		25.45	0	1	84060			39840	35720	32874	32898	43247	43247					-0.003837069705241447
NIPGLRRQ	8	Unmodified	_NIPGLRRQ_					0	0	0		ENST00000426595.1_1_7:55955154-55973975:+|nuORF	ENST00000426595.1_1_7:55955154-55973975:+|nuORF	ENST00000426595.1_1_7:55955154-55973975:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.28387451171875	2	477.2856	952.556647	1.5246	0.00072765	1.1487	0.00054826	2.6733	0.0012759	477.2859857529455	88.231	1.6718	86.863	86.399	88.071	-1.3676					57	33	2	0	0	0	0.028476	1	7806	7806		38.806	21.441	1	232300			39841	11739	32875	32899	43248	43248					0.07847117977087237
NIPIAQRII	9	Unmodified	_NIPIAQRII_					0	0	0		tr|A0A7D6ZIA9|A0A7D6ZIA9_9CLOTPyruvatekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06330PE=3SV=1	tr|A0A7D6ZIA9|A0A7D6ZIA9_9CLOTPyruvatekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06330PE=3SV=1	tr|A0A7D6ZIA9|A0A7D6ZIA9_9CLOTPyruvatekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06330PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.30517578125	2	519.326934	1036.63931	-1.395	-0.00072448	-0.023448	-1.2177E-05	-1.4185	-0.00073666	519.3260855296797	43.675	0.20949	40.667	40.483	40.693	-3.0074					5	3	2	0	0	0	0.027462	1	2102	2102		18.324	0	1	13685			39842	35610	32876	32900	43249	43249					0.12246014985248621
NIPIDIVIH	9	Unmodified	_NIPIDIVIH_					0	0	0			REV__nc|ENSG00000136160|P24530-2|EDNRB	REV__nc|ENSG00000136160|P24530-2|EDNRB	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.3015747070312	2	517.305667	1032.59678	-2.0458	-0.0010583	2.1992	0.0011377	0.15344	7.9376E-05	517.3066794823333	125.36	0.95676	123.94	123.62	124.58	-1.4143					43	18	3	0	0	0	0.55588	1	11932	11932		37.159	3.6661	1	135080	+		39843	19365	32877	32901	43250	43250					0.08178619856994374
NIPIKLSLE	9	Unmodified	_NIPIKLSLE_					0	0	0			REV__tr|A0A7D6VPR0|A0A7D6VPR0_9CLOTHistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19790PE=4SV=1	REV__tr|A0A7D6VPR0|A0A7D6VPR0_9CLOTHistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19790PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	513.8163452148438	2	513.813325	1025.6121	-0.17927	-9.2113E-05	3.3719	0.0017325	3.1926	0.0016404	513.8151245610528	74.922	2.6818	72.512	71.994	74.676	-2.4106					138	52	4	0	0	0	0.48324	1	3825	3825		44.117	0	1	3292300	+		39844	31267	32878	32902	43251	43251					0.10031486654202126
NIPISILVN	9	Unmodified	_NIPISILVN_					0	0	0		tr|A0A7D7A1R1|A0A7D7A1R1_9CLOTDUF4013domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05345PE=4SV=1	tr|A0A7D7A1R1|A0A7D7A1R1_9CLOTDUF4013domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05345PE=4SV=1	tr|A0A7D7A1R1|A0A7D7A1R1_9CLOTDUF4013domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05345PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.9239807128906	2	491.800217	981.585882	-0.5993	-0.00029474	1.4155	0.00069614	0.8162	0.00040141	491.8004823206867	61.343	0.2159	61.343	61.2	61.416	0					6	4	2	0	0	0	0.027462	1	5410	5410		31.53	4.8369	1	96039			39845	36046	32879	32903	43252	43252					0.09435217482700864
NIPRGGSTMKE	11	Unmodified	_NIPRGGSTMKE_					0	0	0		EBF3|p.T13S|1|0.45|ENSG00000108001|chr10:129963732-129963732|T/A|missense_variant	EBF3|p.T13S|1|0.45|ENSG00000108001|chr10:129963732-129963732|T/A|missense_variant	EBF3|p.T13S|1|0.45|ENSG00000108001|chr10:129963732-129963732|T/A|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	595.3054809570312	2	595.303329	1188.59211	0.61441	0.00036576	-1.3561	-0.00080732	-0.74173	-0.00044155	595.3024260115109	114.31	2.8947	114.31	113.66	116.55	0					190	62	5	0	0	0	0.58572	1	13148	13148		45.972	0	1	10641000			39846	776	32880	32904	43253	43253					0.005353676519462169
NIPTARKRSPV	11	Unmodified	_NIPTARKRSPV_					0	0	0			REV__ENSG00000105656|ENST00000262809|ELL	REV__ENSG00000105656|ENST00000262809|ELL	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8681640625	2	619.870028	1237.7255	-3.8587	-0.0023919	2.9348	0.0018192	-0.92393	-0.00057272	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.7046	1	15318	15318		28.081	5.039	1	492670	+		39847	17743	32881	32905	43254	43254					0.11614974819917734
NIPWLLHLP	9	Unmodified	_NIPWLLHLP_					0	0	0		ENSG00000134864|ENST00000683975|GGACT	ENSG00000134864|ENST00000683975|GGACT	ENSG00000134864|ENST00000683975|GGACT	MULTI-SECPEP	OvCa9_classI_Rep3	3	552.291748046875	2	551.824027	1101.6335	-1.1025	-0.00060839	4.3344	0.0023918	3.2319	0.0017834	551.8260821953573	95.424	1.1405	93.528	93.014	94.154	-1.8956					57	22	4	0	0	0	0.027462	1	6218	6218		42.474	1.6963	1	136330			39848	4340	32882	32906	43255	43255					0.08674916473569283
NIPYIKRLV	9	Unmodified	_NIPYIKRLV_					0	0	0		tr|A0A7D6ZYK8|A0A7D6ZYK8_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02665PE=4SV=1	tr|A0A7D6ZYK8|A0A7D6ZYK8_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02665PE=4SV=1	tr|A0A7D6ZYK8|A0A7D6ZYK8_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02665PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.3514404296875	2	558.350409	1114.68626	0.95616	0.00053387	-1.6527	-0.00092278	-0.69653	-0.00038891	558.3495032263	83.609	2.0584	80.946	80.486	82.544	-2.6629					122	42	4	0	0	0	0.25214	1	6968	6968		68.485	0	1	1274500			39849	35920	32883	32907	43256	43256					0.1335087453635424
NIQALKSIL	9	Unmodified	_NIQALKSIL_					0	0	0		nc|ENSG00000110844|Q6NWY9-2|PRPF40B;nc|ENSG00000110844|Q6NWY9-3|PRPF40B;nc|ENSG00000110844|Q6NWY9|PRPF40B;ENSG00000110844|ENST00000548825|PRPF40B	nc|ENSG00000110844|Q6NWY9-2|PRPF40B	nc|ENSG00000110844|Q6NWY9-2|PRPF40B	MULTI-MSMS	OvCa9_classI_Rep3	3	500.31207275390625	2	500.313492	998.612431	0.37155	0.00018589	-0.7555	-0.00037799	-0.38395	-0.00019209	500.31302313941114	128.99	2.6573	127.9	127.57	130.22	-1.0933					135	53	5	0	0	0	0.56889	1	10328	10328		35.618	0	1	747300			39850	2796	32884	32908	43257	43257					0.11306906374034043
NIQALLMDP	9	Unmodified	_NIQALLMDP_					0	0	0		nc|ENSG00000174898|Q86XM0-2|CATSPERD;CATSPERD|p.R779Efs*19|1|0.42|ENSG00000174898|chr19:5778613-5778614|-/G|frameshift_variant;ENSG00000174898|ENST00000381624|CATSPERD	nc|ENSG00000174898|Q86XM0-2|CATSPERD	nc|ENSG00000174898|Q86XM0-2|CATSPERD	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3039245605469	2	507.76806	1013.52157	-1.141	-0.00057938	-1.6839	-0.00085501	-2.8249	-0.0014344	507.76695917703785	92.96	0.55108	90.453	90.262	90.813	-2.5072					19	10	2	0	0	0	0.027402	1	8084	8084		76.774	33.148	1	34449			39851	188	32885	32909	43258	43258					0.015346943342592567
NIQFSCKNI	9	Unmodified	_NIQFSCKNI_					0	0	0		ENSG00000004468|ENST00000226279|CD38	ENSG00000004468|ENST00000226279|CD38	ENSG00000004468|ENST00000226279|CD38	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.8049926757812	2	533.771134	1065.52771	-0.76555	-0.00040863	1.1585	0.00061835	0.39291	0.00020972	533.7718529262798	56.648	0.30538	53.354	53.221	53.527	-3.2944					6	5	2	0	0	0	0.027462	1	3631	3631		14.865	0	1	21720			39852	827	32886	32910	43259	43259					-0.0024278743421746185
NIQIQKIQRT	10	Unmodified	_NIQIQKIQRT_					0	0	0		L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|110|3|sense	L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|110|3|sense	L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|110|3|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.2621765136719	3	414.582333	1240.72517	0.049712	2.061E-05	3.5135	0.0014566	3.5632	0.0014772	414.91794940524005	21.091	0.26592	19.752	19.548	19.813	-1.3386					8	5	2	0	0	0	0.027118	1	130	130		24.232	0	1	5095.4			39853	14709	32887	32911	43260	43260					0.11443555100072444
NIQKIVMYK	9	Unmodified	_NIQKIVMYK_					0	0	0		tr|A0A553SIL1|A0A553SIL1_NIACIGlycosyltransferasefamily4proteinOS=NialliacirculansOX=1397GN=CEQ21_15050PE=4SV=1	tr|A0A553SIL1|A0A553SIL1_NIACIGlycosyltransferasefamily4proteinOS=NialliacirculansOX=1397GN=CEQ21_15050PE=4SV=1	tr|A0A553SIL1|A0A553SIL1_NIACIGlycosyltransferasefamily4proteinOS=NialliacirculansOX=1397GN=CEQ21_15050PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	568.8270263671875	2	568.828452	1135.64235	1.9351	0.0011007	-2.2342	-0.0012709	-0.2991	-0.00017014	568.8269093682014	122.49	0.54789	122.49	122.22	122.77	0					26	11	3	0	0	0	0.46377	1	14122	14122		45.952	1.8352	1	671780			39854	33394	32888	32912	43261	43261					0.07995522047735903
NIQQIVYKI	9	Unmodified	_NIQQIVYKI_					0	0	0		ENST00000503588.1_1_4:129192337-129192508:-|nuORF	ENST00000503588.1_1_4:129192337-129192508:-|nuORF	ENST00000503588.1_1_4:129192337-129192508:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	559.8331298828125	2	559.832049	1117.64954	2.5446	0.0014246	-0.5797	-0.00032453	1.9649	0.0011	559.8315494500976	82.889	0.68359	82.889	82.565	83.249	0					40	15	4	0	0	0	0.19758	1	8593	8593		76.774	2.5191	1	1435300			39855	12864	32889	32913	43262	43262					0.09542577919796713
NIQRPSNQL	9	Unmodified	_NIQRPSNQL_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|93|2|sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|93|2|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.8123168945312	2	535.291079	1068.56761	-1.8099	-0.00096884	-1.4749	-0.00078948	-3.2848	-0.0017583	535.2899238221812	92.594	0.45334	90.086	89.959	90.412	-2.5072					13	8	2	0	0	0	0.027295	1	8065	8065		64.207	5.4253	1	18126	+		39856	28489	32890	32914	43263	43263					0.03606475560718536
NIQYYLSL	8	Unmodified	_NIQYYLSL_					0	0	0			REV__ASTN2|p.S1123Mfs*12|1|0.41|ENSG00000148219|chr9:116487479-116487488|TCAGCAAAAC/-|frameshift_variant	REV__ASTN2|p.S1123Mfs*12|1|0.41|ENSG00000148219|chr9:116487479-116487488|TCAGCAAAAC/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.267822265625	2	507.26875	1012.52295	-2.4376	-0.0012365	-3.3003	-0.0016741	-5.7379	-0.0029107	507.26701545715287	87.855	2.4969	85.229	84.901	87.398	-2.6269					133	49	4	0	0	0	0.56195	1	7533	7533		71.296	1.6681	1	2015000	+		39857	15671	32891	32915	43264	43264					0.017186516946708252
NIRDIFNFE	9	Unmodified	_NIRDIFNFE_					0	0	0			REV__tr|A0A7D6VU99|A0A7D6VU99_9CLOTPhagetailfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11760PE=4SV=1	REV__tr|A0A7D6VU99|A0A7D6VU99_9CLOTPhagetailfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11760PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	584.3311157226562	2	584.293288	1166.57202	0.5527	0.00032294	-4.4004	-0.0025711	-3.8477	-0.0022482	584.2905053111516	112.34	0.98408	111.27	111.02	112.01	-1.0753					41	19	3	0	0	0	0.027462	1	8287	8287		24.519	0	1	107720	+		39858	31662	32892	32916	43265	43265					-0.00460060016416719
NIRITLYAV	9	Unmodified	_NIRITLYAV_					0	0	0		ENST00000533454.5_2_11:75719851-75723976:+|nuORF;ENST00000531818.5_2_11:75719851-75727918:+|nuORF	ENST00000533454.5_2_11:75719851-75723976:+|nuORF	ENST00000533454.5_2_11:75719851-75723976:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8173828125	2	531.818941	1061.62333	0.089047	4.7357E-05	-3.7428	-0.0019905	-3.6538	-0.0019431	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.63422	1	13763	13763		27.882	3.6795	1	263230			39859	13314	32893	32917	43266	43266					0.09498308748311501
NIRKIKDALGL	11	Unmodified	_NIRKIKDALGL_					0	0	0			REV__tr|A0A553SMD0|A0A553SMD0_NIACIGGDEFdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22335PE=4SV=1	REV__tr|A0A553SMD0|A0A553SMD0_NIACIGGDEFdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22335PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.2621765136719	3	414.262712	1239.76631	0.073708	3.0534E-05	-2.0348	-0.00084293	-1.9611	-0.00081239	414.2618187943835	20.482	1.3692	19.143	18.851	20.22	-1.3386					77	27	4	0	0	0	0.69308	1	130	130		32.034	3.4574	1	397370	+		39860	30317	32894	32918	43267	43267					0.1560131613955491
NIRKYRLEN	9	Unmodified	_NIRKYRLEN_					0	0	0		tr|A0A7D6VSG8|A0A7D6VSG8_9CLOTDNAprimaseOS=ClostridiumintestinaleOX=36845GN=dnaGPE=3SV=1	tr|A0A7D6VSG8|A0A7D6VSG8_9CLOTDNAprimaseOS=ClostridiumintestinaleOX=36845GN=dnaGPE=3SV=1	tr|A0A7D6VSG8|A0A7D6VSG8_9CLOTDNAprimaseOS=ClostridiumintestinaleOX=36845GN=dnaGPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	603.3424682617188	2	603.341104	1204.66765	4.6706	0.002818	-2.586	-0.0015602	2.0847	0.0012578	603.339386461168	132.04	0.6246	130.54	130.27	130.9	-1.5015					21	11	2	0	0	0	0.50149	1	12712	12712		42.396	3.1433	1	26419			39861	35023	32895	32919	43268	43268					0.07350712894526623
NIRKYRLEN	9	Unmodified	_NIRKYRLEN_					0	0	0		tr|A0A7D6VSG8|A0A7D6VSG8_9CLOTDNAprimaseOS=ClostridiumintestinaleOX=36845GN=dnaGPE=3SV=1	tr|A0A7D6VSG8|A0A7D6VSG8_9CLOTDNAprimaseOS=ClostridiumintestinaleOX=36845GN=dnaGPE=3SV=1	tr|A0A7D6VSG8|A0A7D6VSG8_9CLOTDNAprimaseOS=ClostridiumintestinaleOX=36845GN=dnaGPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	603.341104	1204.66765	0.24546	0.0001481	1.8944	0.001143	2.1398	0.0012911	603.3421030751235	131.15	0.54805	130.92	130.65	131.2	-0.22696	0.24163	0.0021847	NaN	42.396	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23564			39862	35023	32895	32919							0.07350712894526623
NIRKYRLEN	9	Unmodified	_NIRKYRLEN_					0	0	0		tr|A0A7D6VSG8|A0A7D6VSG8_9CLOTDNAprimaseOS=ClostridiumintestinaleOX=36845GN=dnaGPE=3SV=1	tr|A0A7D6VSG8|A0A7D6VSG8_9CLOTDNAprimaseOS=ClostridiumintestinaleOX=36845GN=dnaGPE=3SV=1	tr|A0A7D6VSG8|A0A7D6VSG8_9CLOTDNAprimaseOS=ClostridiumintestinaleOX=36845GN=dnaGPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	603.341104	1204.66765	1.9179	0.0011571	-0.10722	-6.4691E-05	1.8107	0.0010924	603.3408340636361	131.7	0.64709	130.58	130.39	131.04	-1.1249	-0.10249	-0.00023062	NaN	42.396	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17518			39863	35023	32895	32919							0.07350712894526623
NIRLLPLDL	9	Unmodified	_NIRLLPLDL_					0	0	0			REV__ENSG00000164961|ENST00000318410|WASHC5	REV__ENSG00000164961|ENST00000318410|WASHC5	MULTI-SECPEP	OvCa9_classI_Rep3	3	533.2682495117188	2	533.834591	1065.65463	0.17603	9.397E-05	-0.86426	-0.00046137	-0.68824	-0.0003674	533.8343004411215	133.71	0.73975	132.59	132.37	133.11	-1.1226					23	14	2	0	0	0	0.027462	1	10733	10733		14.865	0	1	31172	+		39864	21043	32896	32920	43269	43269					0.12442881782430959
NIRLRRHSSQ	10	Unmodified	_NIRLRRHSSQ_					0	0	0		nc|ENSG00000165288|Q6RI45-2|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;nc|ENSG00000165288|Q6RI45-5|BRWD3;nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;ENST00000473691.1_1_X:79938122-79975072:-|nuORF;ENST00000497335.1_1_X:79973070-79975054:-|nuORF	nc|ENSG00000165288|Q6RI45-2|BRWD3	nc|ENSG00000165288|Q6RI45-2|BRWD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	421.9194030761719	3	422.909443	1265.7065	-0.36331	-0.00015365	0.52212	0.00022081	0.15881	6.7161E-05	422.90951670258465	37.919	0.53888	37.919	37.576	38.114	0					19	11	2	0	0	0	0.026856	1	2114	2114		21.78	0	1	38576			39865	6548	32897	32921	43270	43270					0.08427438248895669
NISAVRLP	8	Unmodified	_NISAVRLP_					0	0	0		ENST00000432307.1_1_X:110864088-110864580:-|nuORF;ENSG00000063046|ENST00000262056|EIF4B	ENST00000432307.1_1_X:110864088-110864580:-|nuORF	ENST00000432307.1_1_X:110864088-110864580:-|nuORF	MSMS	OvCa99_classI_Rep5	1	435.2627868652344	2	435.263802	868.513051	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.97	1	119.97	119.47	120.47	0								0	0	0	0.30129	1	13778	13778		53.351	5.4358	1				39866	1283	32898	32922	43271	43271					0.07353508479945958
NISENQLGVV	10	Unmodified	_NISENQLGVV_					0	0	0		ENST00000584876.1_1_18:29506506-29522769:-|nuORF	ENST00000584876.1_1_18:29506506-29522769:-|nuORF	ENST00000584876.1_1_18:29506506-29522769:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.7188720703125	2	536.785296	1071.55604	2.9537	0.0015855	-1.6293	-0.00087458	1.3244	0.0007109	536.7842378827729	132.6	0.53806	131.1	131	131.53	-1.5015					19	10	2	0	0	0	0.026968	1	12788	12788		36.447	11.928	1	18706			39867	14022	32899	32923	43272	43272					0.023122337467157195
NISFFELYL	9	Unmodified	_NISFFELYL_					0	0	0			REV__nc|ENSG00000153827|Q14669-4|TRIP12;REV__ENST00000479037.5_1_2:230672327-230744801:-|nuORF	REV__nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.307861328125	2	573.297507	1144.58046	0.68341	0.0003918	0.18991	0.00010887	0.87332	0.00050067	573.2975818664121	132.35	0.66013	132.35	131.99	132.65	0					21	13	2	0	0	0	0.027462	1	15337	15337		34.173	13.226	1	55711	+		39868	20349;26427	32900	32924	43273	43273					0.013954939002587707
NISHEEEGP	9	Unmodified	_NISHEEEGP_					0	0	0		nc|ENSG00000182329|Q0VF49|KIAA2012;ENSG00000182329|ENST00000498697|KIAA2012	nc|ENSG00000182329|Q0VF49|KIAA2012	nc|ENSG00000182329|Q0VF49|KIAA2012	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.3240661621094	2	506.222528	1010.4305	-0.078266	-3.962E-05	-1.143	-0.0005786	-1.2212	-0.00061822	506.2217853658374	106.2	0.78223	104.85	104.61	105.4	-1.3482					20	14	2	0	0	0	0.027418	1	7463	7463		49.442	18.938	1	26221			39869	7995	32901	32925	43274	43274					-0.07429478109509091
NISIGNPT	8	Unmodified	_NISIGNPT_					0	0	0			REV__tr|A0A7D6ZK21|A0A7D6ZK21_9CLOTYncEfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20870PE=4SV=1	REV__tr|A0A7D6ZK21|A0A7D6ZK21_9CLOTYncEfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20870PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	408.21771240234375	2	408.216517	814.418482	0.71948	0.0002937	-0.50762	-0.00020722	0.21186	8.6484E-05	408.21624875687326	53.81	0.68904	53.81	53.564	54.253	0					52	16	4	0	0	0	0.32444	1	4289	4289		102.77	17.414	1	4510400	+		39870	32097	32902	32926	43275	43275					0.003849499379612098
NISIVIRTPD	10	Unmodified	_NISIVIRTPD_					0	0	0			REV__tr|A0A7D6VZZ6|A0A7D6VZZ6_9CLOTAminotransferaseclassV-foldPLP-dependentenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_21530PE=3SV=1	REV__tr|A0A7D6VZZ6|A0A7D6VZZ6_9CLOTAminotransferaseclassV-foldPLP-dependentenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_21530PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.7862548828125	2	564.324588	1126.63462	-0.33034	-0.00018642	0.49501	0.00027935	0.16467	9.2927E-05	564.3245448706459	107.27	0.62941	105.39	105.01	105.64	-1.8785					17	11	2	0	0	0	0.026602	1	9810	9810		40.058	0	1	29947	+		39871	31849	32903	32927	43276	43276					0.07637086051818187
NISKAKTVTV	10	Unmodified	_NISKAKTVTV_					0	0	0		tr|A0A553SIJ0|A0A553SIJ0_NIACIPeptidaseS8OS=NialliacirculansOX=1397GN=CEQ21_14910PE=3SV=1	tr|A0A553SIJ0|A0A553SIJ0_NIACIPeptidaseS8OS=NialliacirculansOX=1397GN=CEQ21_14910PE=3SV=1	tr|A0A553SIJ0|A0A553SIJ0_NIACIPeptidaseS8OS=NialliacirculansOX=1397GN=CEQ21_14910PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	531.8064575195312	2	530.821681	1059.62881	-0.62808	-0.0003334	3.7041	0.0019662	3.076	0.0016328	530.8234925489237	78.861	1.3663	77.121	76.512	77.878	-1.7398					40	26	2	0	0	0	0.026739	1	6562	6562		37.508	0	1	137210			39872	33385	32904	32928	43277	43277					0.10137987540133508
NISPILNPV	9	Unmodified	_NISPILNPV_					0	0	0		HERVH-int_dup93|chr1:54900195-54903183:-|1.1315455096136964|0.040738276592419|4.8|412.0|21|2|sense;HERVH-int_dup82|chr1:53424769-53427698:+|2.2654386177007835|0.0864871400321217|4.71|417.0|54|3|sense;chr1:54883773-54901046|198|19.12|0.0|20.87|-|2|TE_info:HERVH-int,HERVH-int_dup93,ERV1,LTR,donor,-,54901046,54903183|DHCR24,None|3	HERVH-int_dup93|chr1:54900195-54903183:-|1.1315455096136964|0.040738276592419|4.8|412.0|21|2|sense	HERVH-int_dup93|chr1:54900195-54903183:-|1.1315455096136964|0.040738276592419|4.8|412.0|21|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.7755432128906	2	483.784567	965.554582	2.9297	0.0014174	-1.0585	-0.00051209	1.8712	0.00090527	483.78402196050905	89.577	0.36922	89.577	89.394	89.763	0					12	8	2	0	0	0	0.027462	1	9592	9592		19.997	3.5236	1	395500			39873	262	32905	32929	43278	43278					0.07042644448631563
NISSNQEEKQM	11	Unmodified	_NISSNQEEKQM_					0	0	0		tr|A0A553SRC0|A0A553SRC0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00805PE=4SV=1	tr|A0A553SRC0|A0A553SRC0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00805PE=4SV=1	tr|A0A553SRC0|A0A553SRC0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00805PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	436.28961181640625	3	436.53472	1306.58233	0.18621	8.1288E-05	-1.294	-0.00056486	-1.1078	-0.00048358	436.5341018093324	37.874	0.44679	37.874	37.668	38.114	0					15	9	2	0	0	0	0.025677	1	2125	2125		31.068	0	1	164770			39874	34247	32906	32930	43279	43279					-0.05869865144109099
NISSPLGPPVK	11	Unmodified	_NISSPLGPPVK_					0	0	0			REV__ENST00000566376.3_1_18:52999491-53018213:-|nuORF	REV__ENST00000566376.3_1_18:52999491-53018213:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.30224609375	2	554.821681	1107.62881	-0.087693	-4.8654E-05	-0.64997	-0.00036062	-0.73767	-0.00040927	554.8207759537468	74.235	0.62531	71.004	70.906	71.532	-3.2308					16	12	2	0	0	0	0.026042	1	5853	5853		26.063	2.5407	1	22018	+		39875	27701	32907	32931	43280	43280					0.07929987540137517
NISVIHLGAL	10	Unmodified	_NISVIHLGAL_					0	0	0		ENSG00000204033|ENST00000372113|LRIT2;nc|ENSG00000204033|A6NDA9-2|LRIT2	ENSG00000204033|ENST00000372113|LRIT2	ENSG00000204033|ENST00000372113|LRIT2	MULTI-MSMS	OvCa9_classI_Rep2	2	518.8094482421875	2	518.811116	1035.60768	1.8637	0.00096692	-2.8661	-0.001487	-1.0023	-0.00052003	518.8096777874774	87.789	3.0579	86.358	85.791	88.849	-1.4311					163	61	6	0	0	0	0.6349	1	7727	7727		37.812	0	1	5567100			39876	8944	32908	32932	43281	43281					0.09130022231283874
NITDFWKRSL	10	Unmodified	_NITDFWKRSL_					0	0	0		ENSG00000166130|ENST00000299157|IKBIP	ENSG00000166130|ENST00000299157|IKBIP	ENSG00000166130|ENST00000299157|IKBIP	MULTI-MSMS	OvCa9_classI_Rep4_	4	640.34033203125	2	640.343312	1278.67207	-0.07496	-4.8E-05	-3.4344	-0.0021992	-3.5094	-0.0022472	640.3411241833008	52.277	2.1733	49.069	48.742	50.915	-3.208					129	42	5	0	0	0	0.66944	1	3146	3146		15.642	4.0059	1	2332400			39877	6640	32909	32933	43282	43282					0.043881773174234695
NITGTKLGPM	10	Unmodified	_NITGTKLGPM_					0	0	0			REV__ENST00000444273.6_1_6:56954967-57015704:+|nuORF	REV__ENST00000444273.6_1_6:56954967-57015704:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.25146484375	2	516.281334	1030.54812	2.2262	0.0011493	0.40075	0.0002069	2.6269	0.0013562	516.2813580236528	75.952	0.4349	75.952	75.764	76.199	0					16	10	2	0	0	0	0.027056	1	7600	7600		14.865	0	1	267610	+		39878	18083	32910	32934	43283	43283					0.03406383225592435
NITIIDRKV	9	Unmodified	_NITIIDRKV_					0	0	0		nc|ENSG00000145649|P12544-2|GZMA;ENSG00000145649|ENST00000274306|GZMA	nc|ENSG00000145649|P12544-2|GZMA	nc|ENSG00000145649|P12544-2|GZMA	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.2965087890625	2	536.329673	1070.64479	0.36865	0.00019772	-1.8679	-0.0010018	-1.4993	-0.00080411	536.3288933966022	76.186	1.2361	73.814	73.164	74.4	-2.3715					50	23	3	0	0	0	0.027462	1	3937	3937		29.17	0	1	43112			39879	5234	32911	32935	43284	43284					0.11229693777045213
NITIQSPRR	9	Unmodified	_NITIQSPRR_					0	0	0			REV__ENST00000312814.10_1_7:112424837-112430298:-|nuORF	REV__ENST00000312814.10_1_7:112424837-112430298:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	542.81640625	2	542.814722	1083.61489	0.89271	0.00048457	2.6384	0.0014322	3.5311	0.0019167	542.8160168304049	68.906	1.1984	66.092	65.762	66.961	-2.8144					67	23	4	0	0	0	0.46356	1	3027	3027		45.972	0.020292	1	289330	+		39880	24360	32912	32936	43285	43285					0.07642754831704224
NITKLPVG	8	Unmodified	_NITKLPVG_					0	0	0			REV__tr|A0A553ST17|A0A553ST17_NIACIPTSsystemmannose-specificEIIABcomponentOS=NialliacirculansOX=1397GN=CEQ21_04030PE=4SV=1	REV__tr|A0A553ST17|A0A553ST17_NIACIPTSsystemmannose-specificEIIABcomponentOS=NialliacirculansOX=1397GN=CEQ21_04030PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	421.2591857910156	2	421.260728	840.506903	0.30073	0.00012669	-3.3692	-0.0014193	-3.0685	-0.0012926	421.25922240366054	134.3	0.7355	134.07	133.56	134.29	-0.22696					27	14	2	0	0	0	0.75661	1	13279	13279		19.36	0	1	153990	+		39881	30905	32913	32937	43286	43286					0.08026990248424681
NITTASALKK	10	Unmodified	_NITTASALKK_					0	0	0		tr|A0A553SIK1|A0A553SIK1_NIACIDUF1906domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14915PE=4SV=1	tr|A0A553SIK1|A0A553SIK1_NIACIDUF1906domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14915PE=4SV=1	tr|A0A553SIK1|A0A553SIK1_NIACIDUF1906domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14915PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.72607421875	2	523.813856	1045.61316	-0.59371	-0.00031099	1.4659	0.00076785	0.87217	0.00045685	523.8140703500723	23.016	0.40322	23.016	22.894	23.297	0					10	7	2	0	0	0	0.027198	1	288	288		26.693	3.6504	1	25803			39882	33390	32914	32938	43287	43287					0.0921770102308983
NITVIPKK	8	Unmodified	_NITVIPKK_					0	0	0			REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4	REV__nc|ENSG00000146463|Q5VZL5-3|ZMYM4	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.7326965332031	2	456.797478	911.580402	-0.20514	-9.3706E-05	0.10659	4.8688E-05	-0.09855	-4.5017E-05	456.79739376591823	44.728	0.54006	44.728	44.528	45.068	0					16	11	2	0	0	0	0.028476	1	3058	3058		66.429	5.4573	1	137000	+		39883	20019	32915	32939	43288	43288					0.12107538690884212
NITVLYTS	8	Unmodified	_NITVLYTS_					0	0	0		tr|A0A553SFQ3|A0A553SFQ3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09340PE=4SV=1	tr|A0A553SFQ3|A0A553SFQ3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09340PE=4SV=1	tr|A0A553SFQ3|A0A553SFQ3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09340PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	455.7489318847656	2	455.74765	909.480748	2.1204	0.00096636	0.39915	0.00018191	2.5195	0.0011483	455.74760726647935	137.79	0.51965	137.79	137.54	138.06	0					19	11	2	0	0	0	0.56195	1	16080	16080		71.296	0	1	105800			39884	33063	32916	32940	43289	43289					0.02238676286287955
NITYFIPQL	9	Unmodified	_NITYFIPQL_					0	0	0		ENST00000439585.1_1_X:67991699-67992065:+|nuORF	ENST00000439585.1_1_X:67991699-67992065:+|nuORF	ENST00000439585.1_1_X:67991699-67992065:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	554.8079833984375	2	554.8055	1107.59645	0.90211	0.00050049	1.0932	0.00060652	1.9953	0.001107	554.805973456732	152.62	0.54208	152.62	152.36	152.9	0					39	14	3	0	0	0	0.38969	1	17892	17892		52.937	5.2794	1	335530			39885	11917	32917	32941	43290	43290					0.04695200137143729
NIVEGDRVVN	10	Unmodified	_NIVEGDRVVN_					0	0	0			REV__tr|A0A553STA5|A0A553STA5_NIACIO-methyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_04500PE=4SV=1	REV__tr|A0A553STA5|A0A553STA5_NIACIO-methyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_04500PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	556.8085327148438	2	557.796195	1113.57784	0.44071	0.00024583	-1.9615	-0.0010941	-1.5208	-0.0008483	557.7944788171792	121.67	0.35358	120.33	120.16	120.51	-1.3479					10	6	2	0	0	0	0.026891	1	11475	11475		39.253	16.21	1	16049	+		39886	30937	32918	32942	43291	43291					0.025590384953147804
NIVEGDRVVN	10	Unmodified	_NIVEGDRVVN_					0	0	0			REV__tr|A0A553STA5|A0A553STA5_NIACIO-methyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_04500PE=4SV=1	REV__tr|A0A553STA5|A0A553STA5_NIACIO-methyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_04500PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	557.796195	1113.57784	0.85425	0.0004765	-2.6272	-0.0014655	-1.773	-0.00098896	557.7945175729503	121.33	0.52367	120.3	120.07	120.59	-1.0271	-0.012635	-0.00020606	NaN	39.253	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27823	+		39887	30937	32918	32942							0.025590384953147804
NIVEKLREV	9	Unmodified	_NIVEKLREV_					0	0	0		nc|ENSG00000132256|Q9C035-6|TRIM5;nc|ENSG00000132256|Q9C035-5|TRIM5;nc|ENSG00000132256|Q9C035-4|TRIM5;nc|ENSG00000132256|Q9C035-3|TRIM5;nc|ENSG00000132256|Q9C035-2|TRIM5;ENSG00000132256|ENST00000380034|TRIM5	nc|ENSG00000132256|Q9C035-6|TRIM5	nc|ENSG00000132256|Q9C035-6|TRIM5	MULTI-MSMS	OvCa99_classI_Rep5	1	550.33154296875	2	550.327131	1098.63971	2.3963	0.0013187	0.24802	0.00013649	2.6443	0.0014552	550.3272056120824	75.507	0.66216	75.507	75.251	75.913	0					31	16	3	0	0	0	0.13326	1	7519	7519		88.177	5.4265	1	3448400			39888	4119	32919	32943	43292	43292					0.09433389914420331
NIVFNDIVF	9	Unmodified	_NIVFNDIVF_					0	0	0			REV__nc|ENSG00000058668|P23634-5|ATP2B4	REV__nc|ENSG00000058668|P23634-5|ATP2B4	MULTI-MSMS	OvCa99_classI_Rep5	1	540.7888793945312	2	540.78985	1079.56515	-0.40623	-0.00021969	-3.8906	-0.002104	-4.2968	-0.0023237	540.787680126309	54.397	0.8047	54.397	54.13	54.935	0					43	18	4	0	0	0	0.33652	1	4382	4382		58.782	7.4465	1	2381700	+		39889	16729	32920	32944	43293	43293					0.028546271030336356
NIVKAGKDVA	10	Unmodified	_NIVKAGKDVA_					0	0	0			REV__tr|A0A553SIJ0|A0A553SIJ0_NIACIPeptidaseS8OS=NialliacirculansOX=1397GN=CEQ21_14910PE=3SV=1	REV__tr|A0A553SIJ0|A0A553SIJ0_NIACIPeptidaseS8OS=NialliacirculansOX=1397GN=CEQ21_14910PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.8288879394531	2	507.800749	1013.58694	0.79807	0.00040526	-1.6338	-0.00082965	-0.83574	-0.00042439	507.7999023416583	65.823	1.5435	63.128	62.67	64.213	-2.6958					53	28	2	0	0	0	0.026915	1	5075	5075		27.882	4.8398	1	139120	+		39890	29895	32921	32945	43294	43294					0.08069431851617992
NIVLEGFYI	9	Unmodified	_NIVLEGFYI_					0	0	0			REV__tr|A0A7D7A147|A0A7D7A147_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13890PE=4SV=1	REV__tr|A0A7D7A147|A0A7D7A147_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13890PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.2908325195312	2	534.292225	1066.5699	-1.2292	-0.00065674	-2.4895	-0.0013301	-3.7187	-0.0019869	534.2907381876073	123.64	1.1885	122.28	121.7	122.89	-1.3687					49	23	3	0	0	0	0.55588	1	11734	11734		37.159	2.0071	1	92199	+		39891	32471	32922	32946	43295	43295					0.039275112458199146
NIVLSNPKKRN	11	Unmodified	_NIVLSNPKKRN_					0	0	0		ENSG00000134463|ENST00000379215|ECHDC3	ENSG00000134463|ENST00000379215|ECHDC3	ENSG00000134463|ENST00000379215|ECHDC3	MULTI-MSMS	OvCa9_classI_Rep3	3	642.3849487304688	2	641.883136	1281.75172	-4.605	-0.0029559	3.2611	0.0020933	-1.3439	-0.00086262	641.8852528126143	150.24	3.761	149.29	147.05	150.81	-0.95119					231	74	4	0	0	0	0.69424	1	12764	12764		31.634	6.0602	1	246170			39892	4301	32923	32947	43296	43296					0.12211243991418996
NIVNLFSSI	9	Unmodified	_NIVNLFSSI_					0	0	0			REV__ENSG00000165029|ENST00000374736|ABCA1	REV__ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	OvCa9_classI_Rep3	3	503.78082275390625	2	503.782025	1005.5495	-3.1569	-0.0015904	1.9579	0.00098633	-1.199	-0.00060403	503.7833791570304	143.12	1.433	142.13	141.45	142.88	-0.9903					44	28	2	0	0	0	0.5811	1	11895	11895		34.173	2.2177	1	52748	+		39893	21049	32924	32948	43297	43297					0.04694340586001999
NIVNLFSSI	9	Unmodified	_NIVNLFSSI_					0	0	0			REV__ENSG00000165029|ENST00000374736|ABCA1	REV__ENSG00000165029|ENST00000374736|ABCA1	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	503.782025	1005.5495	-2.1068	-0.0010614	1.823	0.00091842	-0.28372	-0.00014293	503.78287469818247	142.52	0.93732	142.29	141.97	142.9	-0.22697	0.099563	0.00042993	NaN	34.173	31	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38508	+		39894	21049	32924	32948							0.04694340586001999
NIVNLFSSI	9	Unmodified	_NIVNLFSSI_					0	0	0			REV__ENSG00000165029|ENST00000374736|ABCA1	REV__ENSG00000165029|ENST00000374736|ABCA1	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	503.782025	1005.5495	-3.1569	-0.0015904	1.9579	0.00098633	-1.199	-0.00060403	503.7833791570304	143.12	1.433	142.13	141.45	142.88	-0.9903	-0.059039	0.00056576	NaN	34.173	44	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52748	+		39895	21049	32924	32948							0.04694340586001999
NIVNSLRLIN	10	Unmodified	_NIVNSLRLIN_					0	0	0		tr|A0A7D6VS53|A0A7D6VS53_9CLOTDUF1576domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04380PE=4SV=1	tr|A0A7D6VS53|A0A7D6VS53_9CLOTDUF1576domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04380PE=4SV=1	tr|A0A7D6VS53|A0A7D6VS53_9CLOTDUF1576domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04380PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.7902221679688	2	578.345855	1154.67716	1.4505	0.00083887	0.95478	0.00055219	2.4052	0.0013911	578.3463860957488	80.793	0.59216	80.793	80.487	81.08	0					32	13	3	0	0	0	0.026681	1	8263	8263		44.377	0	1	1292300			39896	34988	32925	32949	43298	43298					0.1060048118006307
NIVPLALTV	9	Unmodified	_NIVPLALTV_					0	0	0			REV__SP4|p.P463Sfs*42|1|0.04|ENSG00000105866|chr7:21430550-21430551|-/CAGCGGCGATGGCTACAGAAGGAGGGAAA|frameshift_variant	REV__SP4|p.P463Sfs*42|1|0.04|ENSG00000105866|chr7:21430550-21430551|-/CAGCGGCGATGGCTACAGAAGGAGGGAAA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	470.29559326171875	2	470.29731	938.580068	-0.49251	-0.00023162	-2.9033	-0.0013654	-3.3958	-0.001597	470.29591238963496	32.315	1.7376	29.606	29.382	31.119	-2.7097					90	34	5	0	0	0	0.62352	1	1115	1115		29.15	0	1	1326000	+		39897	17763	32926	32950	43299	43299					0.1083211897101819
NIVQAISNVIK	11	Unmodified	_NIVQAISNVIK_					0	0	0		tr|A0A553SQS5|A0A553SQS5_NIACIMetal-dependenthydrolaseOS=NialliacirculansOX=1397GN=CEQ21_07225PE=4SV=1	tr|A0A553SQS5|A0A553SQS5_NIACIMetal-dependenthydrolaseOS=NialliacirculansOX=1397GN=CEQ21_07225PE=4SV=1	tr|A0A553SQS5|A0A553SQS5_NIACIMetal-dependenthydrolaseOS=NialliacirculansOX=1397GN=CEQ21_07225PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	400.2449035644531	3	400.243317	1197.70812	1.1404	0.00045643	3.0446	0.0012186	4.185	0.001675	400.24446498306764	47.702	0.73922	47.702	47.465	48.204	0					32	16	3	0	0	0	0.50203	1	3455	3455		53.597	2.8056	1	1992800			39898	34191	32927	32951	43300	43300					0.11717634494289086
NIVQAISNVIK	11	Unmodified	_NIVQAISNVIK_					0	0	0		tr|A0A553SQS5|A0A553SQS5_NIACIMetal-dependenthydrolaseOS=NialliacirculansOX=1397GN=CEQ21_07225PE=4SV=1	tr|A0A553SQS5|A0A553SQS5_NIACIMetal-dependenthydrolaseOS=NialliacirculansOX=1397GN=CEQ21_07225PE=4SV=1	tr|A0A553SQS5|A0A553SQS5_NIACIMetal-dependenthydrolaseOS=NialliacirculansOX=1397GN=CEQ21_07225PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	400.243317	1197.70812	0.55567	0.0002224	6.1585	0.0024649	6.7141	0.0026873	400.24742697774127	50.316	1.2888	47.522	46.933	48.222	-2.794	-0.090163	0.0035857	NaN	53.597	64	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60211			39899	34191	32927	32951							0.11717634494289086
NIVRCPLV	8	Unmodified	_NIVRCPLV_					0	0	0			REV__ENST00000409892.5_1_2:65315130-65315409:-|nuORF	REV__ENST00000409892.5_1_2:65315130-65315409:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.79736328125	2	457.26803	912.521507	-0.33353	-0.00015251	-2.8519	-0.0013041	-3.1854	-0.0014566	457.266553645458	105.87	1.6383	103.86	103.45	105.09	-2.0161					55	31	2	0	0	0	0.028476	1	9585	9585		79.939	22.128	1	58477	+		39900	25485	32928	32952	43301	43301					0.06174739124912776
NIVRLHLYRKF	11	Unmodified	_NIVRLHLYRKF_					0	0	0		chr2:61972026-62000701|117|22.18|0.65|5.09|+|0|TE_info:AluJb,AluJb_dup14613,Alu,SINE,donor,+,61971839,61972026|None,COMMD1|2	chr2:61972026-62000701|117|22.18|0.65|5.09|+|0|TE_info:AluJb,AluJb_dup14613,Alu,SINE,donor,+,61971839,61972026|None,COMMD1|2	chr2:61972026-62000701|117|22.18|0.65|5.09|+|0|TE_info:AluJb,AluJb_dup14613,Alu,SINE,donor,+,61971839,61972026|None,COMMD1|2	MULTI-MSMS	OvCa9_classI_Rep2	2	486.9576721191406	3	486.961256	1457.86194	-4.5662	-0.0022236	-0.079452	-3.869E-05	-4.6457	-0.0022623	486.96097052321403	158.19	2.6802	157.96	156.57	159.25	-0.22697					116	71	2	0	0	0	0.72548	1	16043	16043		9.2118	2.5522	1	34308			39901	443	32929	32953	43302	43302					0.1513208905043939
NIVRLHLYRKF	11	Unmodified	_NIVRLHLYRKF_					0	0	0		chr2:61972026-62000701|117|22.18|0.65|5.09|+|0|TE_info:AluJb,AluJb_dup14613,Alu,SINE,donor,+,61971839,61972026|None,COMMD1|2	chr2:61972026-62000701|117|22.18|0.65|5.09|+|0|TE_info:AluJb,AluJb_dup14613,Alu,SINE,donor,+,61971839,61972026|None,COMMD1|2	chr2:61972026-62000701|117|22.18|0.65|5.09|+|0|TE_info:AluJb,AluJb_dup14613,Alu,SINE,donor,+,61971839,61972026|None,COMMD1|2	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.95880126953125	3	486.961256	1457.86194	-6.3941	-0.0031137	1.5633	0.00076127	-4.8308	-0.0023524	486.96182500070705	161.6	3.2719	159.97	158.36	161.63	-1.6239					171	80	4	0	0	0	0.72516	1	15925	15925		13.508	1.872	1	99720			39902	443	32929	32953	43303	43303					0.1513208905043939
NIVSILEDVN	10	Unmodified	_NIVSILEDVN_					0	0	0		tr|A0A553SK25|A0A553SK25_NIACIEndonucleaseMutS2OS=NialliacirculansOX=1397GN=mutS2PE=3SV=1	tr|A0A553SK25|A0A553SK25_NIACIEndonucleaseMutS2OS=NialliacirculansOX=1397GN=mutS2PE=3SV=1	tr|A0A553SK25|A0A553SK25_NIACIEndonucleaseMutS2OS=NialliacirculansOX=1397GN=mutS2PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.8283081054688	2	558.300778	1114.587	0.91979	0.00051352	-0.88694	-0.00049518	0.032846	1.8338E-05	558.2999299884415	109.59	1.1891	107.87	107.23	108.42	-1.7256					39	22	3	0	0	0	0.026653	1	10090	10090		49.536	0	1	53414			39903	33569	32930	32954	43304	43304					0.03429387060964473
NIVVSFLLQG	10	Unmodified	_NIVVSFLLQG_					0	0	0			REV__ENSG00000162896|ENST00000356495|PIGR	REV__ENSG00000162896|ENST00000356495|PIGR	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.3173828125	2	545.318774	1088.623	-0.51372	-0.00028014	-3.2363	-0.0017648	-3.75	-0.002045	545.3169196404446	142.63	4.7541	141.19	139.73	144.49	-1.4427					172	91	2	0	0	0	0.75313	1	13909	13909		24.519	1.9395	1	155190	+		39904	20789	32931	32955	43305	43305					0.08222889028479585
NIVVVTPIE	9	Unmodified	_NIVVVTPIE_					0	0	0		tr|A0A7D6VST9|A0A7D6VST9_9CLOTS41familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02530PE=3SV=1	tr|A0A7D6VST9|A0A7D6VST9_9CLOTS41familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02530PE=3SV=1	tr|A0A7D6VST9|A0A7D6VST9_9CLOTS41familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02530PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	492.29052734375	2	492.292225	982.569897	-1.3787	-0.00067874	-1.5529	-0.00076448	-2.9316	-0.0014432	492.2912275187481	35.09	1.142	32.381	32.158	33.3	-2.7097					49	22	4	0	0	0	0.48324	1	1416	1416		44.117	6.9577	1	210830			39905	35055	32932	32956	43306	43306					0.07791511245818583
NIVYTGCA	8	Unmodified	_NIVYTGCA_					0	0	0		nc|ENSG00000122376|Q86V20|SHLD2;ENSG00000122376|ENST00000298786|SHLD2	nc|ENSG00000122376|Q86V20|SHLD2	nc|ENSG00000122376|Q86V20|SHLD2	MSMS	OvCa99_classI_Rep5	1	420.7005310058594	2	420.699646	839.384739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.904	1	23.904	23.404	24.404	0								0	0	0	0.30129	1	386	386		37.159	5.2042	1				39906	3528	32933	32957	43307	43307					-0.0413779482546488
NIWLPISEAL	10	Unmodified	_NIWLPISEAL_					0	0	0		tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	578.8441772460938	2	578.324057	1154.63356	-2.1239	-0.0012283	0.98662	0.00057058	-1.1373	-0.00065772	578.3244021954796	62.102	1.3691	59.343	58.777	60.146	-2.7593					48	26	2	0	0	0	0.026802	1	4693	4693		19.997	0	1	106210			39907	35500	32934	32958	43308	43308					0.06242871682911755
NIWSGTIPG	9	Unmodified	_NIWSGTIPG_					0	0	0			REV__tr|A0A553SJS7|A0A553SJS7_NIACIPepSYdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_17530PE=4SV=1	REV__tr|A0A553SJS7|A0A553SJS7_NIACIPepSYdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_17530PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.8039855957031	2	472.745442	943.476331	2.4731	0.0011691	0.047628	2.2516E-05	2.5207	0.0011917	472.74537880219464	99.579	0.4564	99.579	99.361	99.817	0					15	10	2	0	0	0	0.027462	1	10993	10993		44.117	3.5442	1	513590	+		39908	30039	32935	32959	43309	43309					0.0023321186340581335
NIYMLVQNN	9	Unmodified	_NIYMLVQNN_					0	0	0		tr|A0A7D6ZZE4|A0A7D6ZZE4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19975PE=4SV=1	tr|A0A7D6ZZE4|A0A7D6ZZE4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19975PE=4SV=1	tr|A0A7D6ZZE4|A0A7D6ZZE4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19975PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.7957153320312	2	554.776416	1107.53828	-0.044657	-2.4775E-05	-0.76237	-0.00042294	-0.80703	-0.00044772	555.2773545823098	77.303	0.48547	74.487	74.244	74.729	-2.8165					15	9	2	0	0	0	0.027448	1	6161	6161		44.117	0	1	43343			39909	35958	32936	32960	43310	43310					-0.011188047797759282
NIYVLNYLN	9	Unmodified	_NIYVLNYLN_					0	0	0		ENSG00000126838|ENST00000261336|PZP;nc|ENSG00000126838|P20742-2|PZP	ENSG00000126838|ENST00000261336|PZP	ENSG00000126838|ENST00000261336|PZP	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.8389892578125	2	563.300581	1124.58661	0.015176	8.5485E-06	-4.0649	-0.0022898	-4.0498	-0.0022812	563.2982341903597	54.551	0.33956	54.551	54.293	54.632	0					10	7	2	0	0	0	0.027448	1	4414	4414		53.351	26.555	1	219450			39910	3805	32937	32961	43311	43311					0.0293001213176467
NIYVNKIKF	9	Unmodified	_NIYVNKIKF_					0	0	0			REV__tr|A0A553SK79|A0A553SK79_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_18140PE=4SV=1	REV__tr|A0A553SK79|A0A553SK79_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_18140PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.8170776367188	2	569.834591	1137.65463	0.13762	7.842E-05	1.5267	0.00086999	1.6644	0.00094841	569.8355577982422	114.47	0.6362	114.47	114.11	114.74	0					20	13	2	0	0	0	0.027462	1	13094	13094		37.159	22.294	1	151170	+		39911	30090	32938	32962	43312	43312					0.09130881782425604
NKAAVIGFIL	10	Unmodified	_NKAAVIGFIL_					0	0	0			REV__tr|A0A553STM0|A0A553STM0_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05365PE=3SV=1	REV__tr|A0A553STM0|A0A553STM0_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05365PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.7737426757812	2	523.32386	1044.63317	1.6358	0.00085603	0.75842	0.0003969	2.3942	0.0012529	523.3241054255567	117.8	0.88317	117.8	117.51	118.39	0					38	18	3	0	0	0	0.026752	1	13524	13524		35.618	5.7767	1	696940	+		39912	30983	32939	32963	43313	43313					0.11263496753713298
NKADVILKY	9	Unmodified	_NKADVILKY_					0	0	0		ENST00000464196.5_1_Y:22749894-22750047:+|nuORF;ENST00000465253.1_1_Y:22737757-22750047:+|nuORF;chrX:20132263-20135738|109|18.18|0.8|4.5|-|0|EIF1AX,EIF1AX|1;ENST00000485584.1_1_Y:22749894-22754229:+|nuORF;ENSG00000198692|ENST00000361365|EIF1AY;ENSG00000173674|ENST00000379607|EIF1AX	ENST00000464196.5_1_Y:22749894-22750047:+|nuORF	ENST00000464196.5_1_Y:22749894-22750047:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	532.3096923828125	2	532.310949	1062.60735	-2.1988	-0.0011705	1.6109	0.0008575	-0.58794	-0.00031297	532.3116042414085	68.062	1.3341	65.401	64.941	66.275	-2.661					76	26	4	0	0	0	0.23241	2	5346	5346;5352		70.816	15.656	1	315500			39913	12244	32940	32964	43314;43315	43314					0.07854602511406483
NKADVILKY	9	Unmodified	_NKADVILKY_					0	0	0		ENST00000464196.5_1_Y:22749894-22750047:+|nuORF;ENST00000465253.1_1_Y:22737757-22750047:+|nuORF;chrX:20132263-20135738|109|18.18|0.8|4.5|-|0|EIF1AX,EIF1AX|1;ENST00000485584.1_1_Y:22749894-22754229:+|nuORF;ENSG00000198692|ENST00000361365|EIF1AY;ENSG00000173674|ENST00000379607|EIF1AX	ENST00000464196.5_1_Y:22749894-22750047:+|nuORF	ENST00000464196.5_1_Y:22749894-22750047:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.3112182617188	2	532.310949	1062.60735	-1.1993	-0.00063842	0.43556	0.00023186	-0.76377	-0.00040656	532.3110569500761	68.971	1.4172	65.481	65.113	66.53	-3.4902					78	28	4	0	0	0	0.084918	3	5135	5135;5144;5156		101.25	24.478	1	548550			39914	12244	32940	32964	43316;43317;43318	43316					0.07854602511406483
NKAENLLR	8	Unmodified	_NKAENLLR_					0	0	0		ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000145675|P27986-4|PIK3R1;nc|ENSG00000145675|P27986-5|PIK3R1;nc|ENSG00000145675|P27986-3|PIK3R1;nc|ENSG00000145675|P27986-2|PIK3R1	ENSG00000145675|ENST00000521381|PIK3R1	ENSG00000145675|ENST00000521381|PIK3R1	MULTI-MSMS	OvCa9_classI_Rep3	3	479.2776184082031	2	479.277441	956.540328	0.0077745	3.7261E-06	0.043044	2.063E-05	0.050818	2.4356E-05	479.2773344637922	132.95	4.5388	131.83	130.54	135.08	-1.1249					204	91	3	0	0	0	0.7594	1	10596	10596		21.96	0	1	53495			39915	5235	32941	32965	43319	43319					0.060319920203255606
NKAFVHILPE	10	Unmodified	_NKAFVHILPE_					0	0	0			REV__ENSG00000157778|ENST00000288607|PSMG3	REV__ENSG00000157778|ENST00000288607|PSMG3	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3291015625	2	584.329673	1166.64479	-0.20323	-0.00011875	-0.82135	-0.00047994	-1.0246	-0.00059869	584.3291428844931	113.42	3.0581	111.97	111.7	114.76	-1.4461					136	60	4	0	0	0	0.28845	1	10497	10497		82.241	6.0708	1	862170	+		39916	20533	32942	32966	43320	43320					0.06813693777030494
NKAGGGGG	8	Unmodified	_NKAGGGGG_					0	0	0		ATP4A|p.K30N|1|0.11|ENSG00000105675|chr19:35563450-35563450|C/G|missense_variant	ATP4A|p.K30N|1|0.11|ENSG00000105675|chr19:35563450-35563450|C/G|missense_variant	ATP4A|p.K30N|1|0.11|ENSG00000105675|chr19:35563450-35563450|C/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	617.3294677734375	1	617.300164	616.292888	1.3236	0.00081705	-4.0135	-0.0024776	-2.69	-0.0016605	617.2979791129281	130.69	0.3356	130.69	130.53	130.87	0					10	6	2	0	0	0	0.028476	1	15163	15163		4.6817	0	1	53472			39917	130	32943	32967	43321	43321					-0.030607171276187728
NKAIARAIS	9	Unmodified	_NKAIARAIS_					0	0	0			REV__tr|A0A7D6VTR0|A0A7D6VTR0_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17865PE=3SV=1	REV__tr|A0A7D6VTR0|A0A7D6VTR0_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17865PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.8087463378906	2	472.287808	942.561064	1.562	0.0007377	-2.0453	-0.00096597	-0.48333	-0.00022827	472.2867171267136	37.5	1.045	34.608	34.343	35.388	-2.8925					29	20	2	0	0	0	0.027462	1	1463	1463		39.253	5.0803	1	68059	+		39918	31624	32944	32968	43322	43322					0.08748582399982752
NKAIARAIS	9	Unmodified	_NKAIARAIS_					0	0	0			REV__tr|A0A7D6VTR0|A0A7D6VTR0_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17865PE=3SV=1	REV__tr|A0A7D6VTR0|A0A7D6VTR0_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17865PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	472.287808	942.561064	-2.2307	-0.0010535	2.2502	0.0010627	0.019497	9.2084E-06	472.28874310281117	37.466	0.49216	34.756	34.534	35.026	-2.7097	0.07415	0.0024058	NaN	44.377	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14915	+		39919	31624	32944	32968							0.08748582399982752
NKAIASHPMP	10	Unmodified	_NKAIASHPMP_					0	0	0			REV__UBR1|p.D1423Vfs*11|1|0.83|ENSG00000159459|chr15:42976794-42976818|GAACTAACTGAAGAAGGCTGCAGAT/-|frameshift_variant	REV__UBR1|p.D1423Vfs*11|1|0.83|ENSG00000159459|chr15:42976794-42976818|GAACTAACTGAAGAAGGCTGCAGAT/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.31591796875	2	533.279126	1064.5437	1.3759	0.00073376	-3.7597	-0.002005	-2.3837	-0.0012712	533.2770660009379	111.77	0.54977	111.77	111.51	112.06	0					16	11	2	0	0	0	0.02661	1	12708	12708		32.812	0	1	187910	+		39920	20617	32945	32969	43323	43323					0.014009188026875563
NKAIAVIVLI	10	Unmodified	_NKAIAVIVLI_					0	0	0			REV__ENSG00000166603|ENST00000299766|MC4R	REV__ENSG00000166603|ENST00000299766|MC4R	MULTI-MSMS	OvCa9_classI_Rep2	2	527.3550415039062	2	527.35516	1052.69577	-0.14415	-7.6019E-05	0.083086	4.3816E-05	-0.061065	-3.2203E-05	527.3549928566696	133.68	0.83745	133.46	133.11	133.95	-0.22697					42	16	3	0	0	0	0.68695	1	13218	13218		31.955	2.1133	1	97589	+		39921	21211	32946	32970	43324	43324					0.17152642821906738
NKAIGKKIV	9	Unmodified	_NKAIGKKIV_					0	0	0		tr|A0A7D6ZEJ3|A0A7D6ZEJ3_9CLOTTm-1-likeATP-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13905PE=4SV=1	tr|A0A7D6ZEJ3|A0A7D6ZEJ3_9CLOTTm-1-likeATP-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13905PE=4SV=1	tr|A0A7D6ZEJ3|A0A7D6ZEJ3_9CLOTTm-1-likeATP-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13905PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.2919616699219	2	485.824027	969.633501	0.50964	0.0002476	-1.0137	-0.0004925	-0.50411	-0.00024491	485.82339279932154	82.057	1.1456	80.409	80.023	81.169	-1.6485					40	21	3	0	0	0	0.027456	1	6984	6984		47.916	10.887	1	75115			39922	35484	32947	32971	43325	43325					0.14746916473563942
NKAIGKKIV	9	Unmodified	_NKAIGKKIV_					0	0	0		tr|A0A7D6ZEJ3|A0A7D6ZEJ3_9CLOTTm-1-likeATP-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13905PE=4SV=1	tr|A0A7D6ZEJ3|A0A7D6ZEJ3_9CLOTTm-1-likeATP-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13905PE=4SV=1	tr|A0A7D6ZEJ3|A0A7D6ZEJ3_9CLOTTm-1-likeATP-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13905PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	485.824027	969.633501	2.3771	0.0011549	-0.072762	-3.5349E-05	2.3044	0.0011195	485.8238027018027	80.301	0.33903	80.301	80.148	80.487	0	-0.071204	-8.4942E-05	NaN	16.473	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109620			39923	35484	32947	32971							0.14746916473563942
NKAIVYISF	9	Unmodified	_NKAIVYISF_					0	0	0		tr|A0A7D6ZXZ6|A0A7D6ZXZ6_9CLOTDegVfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00220PE=4SV=1	tr|A0A7D6ZXZ6|A0A7D6ZXZ6_9CLOTDegVfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00220PE=4SV=1	tr|A0A7D6ZXZ6|A0A7D6ZXZ6_9CLOTDegVfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00220PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.322265625	2	527.800217	1053.58588	0.62141	0.00032798	1.6226	0.00085639	2.244	0.0011844	527.8008388941869	132.21	0.56323	132.21	131.95	132.51	0					22	11	3	0	0	0	0.027343	1	15358	15358		68.787	33.169	1	61749			39924	35901	32948	32972	43326	43326					0.061232174826727714
NKAKEGQEV	9	Unmodified	_NKAKEGQEV_					0	0	0		tr|A0A553SJI1|A0A553SJI1_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_16615PE=3SV=1	tr|A0A553SJI1|A0A553SJI1_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_16615PE=3SV=1	tr|A0A553SJI1|A0A553SJI1_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_16615PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.8008117675781	2	501.764363	1001.51417	0.0042966	2.1559E-06	4.4732	0.0022445	4.4775	0.0022467	501.76678467653835	73.605	0.23497	73.605	73.52	73.755	0					8	5	2	0	0	0	0.027418	1	7232	7232		62.107	1.9892	1	227110			39925	33506	32949	32973	43327	43327					0.013476780581981984
NKAKEGQEV	9	Unmodified	_NKAKEGQEV_					0	0	0		tr|A0A553SJI1|A0A553SJI1_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_16615PE=3SV=1	tr|A0A553SJI1|A0A553SJI1_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_16615PE=3SV=1	tr|A0A553SJI1|A0A553SJI1_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_16615PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	501.764363	1001.51417	-1.0011	-0.00050231	11.132	0.0055859	10.131	0.0050836	502.2688213927128	75.813	0.50508	73.442	73.216	73.721	-2.3715	-0.081881	0.0044417	NaN	62.107	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17510			39926	33506	32949	32973							0.013476780581981984
NKAKEIATK	9	Unmodified	_NKAKEIATK_					0	0	0			REV__tr|A0A553STU8|A0A553STU8_NIACIFour-carbonacidsugarkinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05650PE=3SV=1	REV__tr|A0A553STU8|A0A553STU8_NIACIFour-carbonacidsugarkinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05650PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	501.8008117675781	2	501.800749	1001.58694	-0.071278	-3.5767E-05	1.1083	0.00055613	1.037	0.00052037	501.8010915512619	73.552	0.63256	73.552	73.235	73.868	0					39	15	3	0	0	0	0.1944	1	7232	7232		77.318	15.21	1	2400700	+		39927	31014	32950	32974	43328	43328					0.08621431851611305
NKALEKKGI	9	Unmodified	_NKALEKKGI_					0	0	0		ENSG00000105298|ENST00000429344|CACTIN;nc|ENSG00000105298|Q8WUQ7-2|CACTIN	ENSG00000105298|ENST00000429344|CACTIN	ENSG00000105298|ENST00000429344|CACTIN	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.7589111328125	2	500.811116	999.60768	-0.75971	-0.00038047	0.030512	1.5281E-05	-0.72919	-0.00036519	500.8109177824563	69.758	1.2	67.187	66.565	67.765	-2.5707					61	23	5	0	0	0	0.027447	1	5484	5484		47.657	3.1263	1	130860			39928	2440	32951	32975	43329	43329					0.10786022231263814
NKALEKKGI	9	Unmodified	_NKALEKKGI_					0	0	0		ENSG00000105298|ENST00000429344|CACTIN;nc|ENSG00000105298|Q8WUQ7-2|CACTIN	ENSG00000105298|ENST00000429344|CACTIN	ENSG00000105298|ENST00000429344|CACTIN	MULTI-MATCH	OvCa9_classI_Rep3	3		2	500.811116	999.60768	0.22999	0.00011518	-0.69426	-0.00034769	-0.46427	-0.00023251	500.8106782294668	69.946	0.7446	67.226	67.006	67.75	-2.7196	-0.091737	-0.00057371	NaN	47.657	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91148			39929	2440	32951	32975							0.10786022231263814
NKALEKKGI	9	Unmodified	_NKALEKKGI_					0	0	0		ENSG00000105298|ENST00000429344|CACTIN;nc|ENSG00000105298|Q8WUQ7-2|CACTIN	ENSG00000105298|ENST00000429344|CACTIN	ENSG00000105298|ENST00000429344|CACTIN	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	500.811116	999.60768	-1.1463	-0.0005741	0.9519	0.00047672	-0.19445	-9.7381E-05	500.81134835297786	70.996	0.82115	67.54	67.203	68.024	-3.4563	0.22245	0.0010751	NaN	47.657	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167290			39930	2440	32951	32975							0.10786022231263814
NKALRKINL	9	Unmodified	_NKALRKINL_					0	0	0		tr|A0A7D6W3I1|A0A7D6W3I1_9CLOTTerminaselargesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_10165PE=4SV=1	tr|A0A7D6W3I1|A0A7D6W3I1_9CLOTTerminaselargesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_10165PE=4SV=1	tr|A0A7D6W3I1|A0A7D6W3I1_9CLOTTerminaselargesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_10165PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	535.3485107421875	2	535.345658	1068.67676	0.89012	0.00047652	3.3488	0.0017928	4.2389	0.0022693	535.3473648219193	132.25	2.5764	132.25	131.85	134.43	0					153	54	5	0	0	0	0.50149	1	15612	15612		42.396	3.1433	1	6677400			39931	35453	32952	32976	43330	43330					0.14517106250809775
NKALSPVTSR	10	Unmodified	_NKALSPVTSR_					0	0	0		EP400|p.D2035Afs*2|1|0.12|ENSG00000183495|chr12:132037992-132037993|-/C|frameshift_variant;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400;nc|ENSG00000183495|Q96L91-4|EP400;EP400|p.P1343Qfs*17|1|0.1|ENSG00000183495|chr12:132017637-132017637|C/-|frameshift_variant;EP400|p.L1422Tfs*90|1|0.12|ENSG00000183495|chr12:132018362-132018363|-/A|frameshift_variant	EP400|p.D2035Afs*2|1|0.12|ENSG00000183495|chr12:132037992-132037993|-/C|frameshift_variant	EP400|p.D2035Afs*2|1|0.12|ENSG00000183495|chr12:132037992-132037993|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.8099975585938	2	536.809105	1071.60366	-0.85455	-0.00045873	0.26238	0.00014085	-0.59217	-0.00031788	536.8091929671385	66.71	1.4792	63.22	62.805	64.284	-3.4902					90	29	6	0	0	0	0.70152	1	4892	4892		30.318	1.1682	1	2051100			39932	8079	32953	32977	43331	43331					0.0707193273754001
NKANEVLVK	9	Unmodified	_NKANEVLVK_					0	0	0			REV__nc|ENSG00000096093|Q5JVL4-3|EFHC1	REV__nc|ENSG00000096093|Q5JVL4-3|EFHC1	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.814208984375	2	507.800749	1013.58694	-1.1806	-0.0005995	0.55645	0.00028256	-0.62412	-0.00031693	507.80101430720435	95.951	1.5092	94.123	93.682	95.191	-1.8286					65	29	3	0	0	0	0.023563	1	6402	6402		138.83	11.364	1	226120	+		39933	17304	32954	32978	43332	43332					0.08069431851606623
NKANEVLVK	9	Unmodified	_NKANEVLVK_					0	0	0			REV__nc|ENSG00000096093|Q5JVL4-3|EFHC1	REV__nc|ENSG00000096093|Q5JVL4-3|EFHC1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	507.800749	1013.58694	-0.46775	-0.00023752	-0.85781	-0.0004356	-1.3256	-0.00067312	507.8006838035772	95.178	1.1394	94.15	93.824	94.963	-1.0281	-0.035161	-0.0010025	NaN	138.83	59	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183340	+		39934	17304	32954	32978							0.08069431851606623
NKAQHEKPL	9	Unmodified	_NKAQHEKPL_					0	0	0		ENSG00000101745|ENST00000262126|ANKRD12;nc|ENSG00000101745|Q6UB98-2|ANKRD12	ENSG00000101745|ENST00000262126|ANKRD12	ENSG00000101745|ENST00000262126|ANKRD12	MSMS	OvCa9_classI_Rep4_	4	532.7968139648438	2	532.795998	1063.57744	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.43	1	146.99	146.49	147.49	-1.435								0	0	0	0.22801	1	14622	14622		21.96	0.25755	1				39935	2197	32955	32979	43333	43333					0.048196635660815446
NKAQKAELI	9	Unmodified	_NKAQKAELI_					0	0	0			REV__nc|ENSG00000182220|O75787-2|ATP6AP2	REV__nc|ENSG00000182220|O75787-2|ATP6AP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3281555175781	2	507.800749	1013.58694	-0.95301	-0.00048394	0.087867	4.4619E-05	-0.86515	-0.00043932	507.80061827663843	65.924	0.39375	65.924	65.665	66.059	0					19	9	3	0	0	0	0.027441	1	6068	6068		32.812	3.6629	1	757660	+		39936	22272	32956	32980	43334	43334					0.08069431851606623
NKARKITIT	9	Unmodified	_NKARKITIT_					0	0	0			REV__tr|A0A7D6ZPZ2|A0A7D6ZPZ2_9CLOTDUF348domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22440PE=4SV=1	REV__tr|A0A7D6ZPZ2|A0A7D6ZPZ2_9CLOTDUF348domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22440PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.7793579101562	2	522.82984	1043.64513	0.052519	2.7459E-05	-4.282	-0.0022388	-4.2295	-0.0022113	522.8276419323885	72.457	0.59828	72.457	72.125	72.723	0					26	14	3	0	0	0	0.027418	1	7086	7086		40.778	12.896	1	987050	+		39937	32143	32957	32981	43335	43335					0.1250511349687713
NKARKSADLL	10	Unmodified	_NKARKSADLL_					0	0	0			REV__nc|ENSG00000127334|Q92630-2|DYRK2	REV__nc|ENSG00000127334|Q92630-2|DYRK2	MULTI-MSMS	OvCa99_classI_Rep5	1	558.3346557617188	2	558.330205	1114.64586	2.9191	0.0016298	2.5445	0.0014207	5.4636	0.0030505	558.3314446403455	107.58	0.79833	107.58	107.31	108.11	0					53	18	4	0	0	0	0.42082	1	12138	12138		65.465	8.7443	1	4006300	+		39938	18811	32958	32982	43336	43336					0.09311908145923553
NKARLEHA	8	Unmodified	_NKARLEHA_					0	0	0		RGS7|p.L145H|1|0.35|ENSG00000182901|chr1:240870071-240870071|A/T|missense_variant	RGS7|p.L145H|1|0.35|ENSG00000182901|chr1:240870071-240870071|A/T|missense_variant	RGS7|p.L145H|1|0.35|ENSG00000182901|chr1:240870071-240870071|A/T|missense_variant	MSMS	OvCa99_classI_Rep5	1	469.76220703125	2	469.761958	937.509363	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.76	1	134.76	134.26	135.26	0								0	0	0	0.30129	1	15690	15690		42.474	0	1				39939	32784	32959	32983	43337	43337					0.03810838706067443
NKASAMKTFE	10	Unmodified	_NKASAMKTFE_					0	0	0		tr|A0A7D6W3I1|A0A7D6W3I1_9CLOTTerminaselargesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_10165PE=4SV=1	tr|A0A7D6W3I1|A0A7D6W3I1_9CLOTTerminaselargesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_10165PE=4SV=1	tr|A0A7D6W3I1|A0A7D6W3I1_9CLOTTerminaselargesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_10165PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.296630859375	2	563.781699	1125.54884	2.1132	0.0011914	1.8852	0.0010629	3.9984	0.0022542	563.7824132210428	118.64	0.8973	118.64	118.3	119.19	0					55	18	4	0	0	0	0.02676	1	13660	13660		49.536	30.433	1	390760			39940	35453	32960	32984	43338	43338					-0.008908221253477677
NKASPPFPLIS	11	Unmodified	_NKASPPFPLIS_					0	0	0		ENSG00000072415|ENST00000261681|PALS1;nc|ENSG00000072415|Q8N3R9-2|PALS1	ENSG00000072415|ENST00000261681|PALS1	ENSG00000072415|ENST00000261681|PALS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	585.8273315429688	2	585.829506	1169.64446	-1.3061	-0.00076515	-4.1398	-0.0024252	-5.4459	-0.0031904	585.8269741255776	100.99	1.1106	98.723	98.498	99.609	-2.2665					34	22	2	0	0	0	0.48812	1	9053	9053		54.722	3.1946	1	135220			39941	1472	32961	32985	43339	43339					0.06642274057185205
NKASPPFPLIS	11	Unmodified	_NKASPPFPLIS_					0	0	0		ENSG00000072415|ENST00000261681|PALS1;nc|ENSG00000072415|Q8N3R9-2|PALS1	ENSG00000072415|ENST00000261681|PALS1	ENSG00000072415|ENST00000261681|PALS1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	585.829506	1169.64446	-0.98577	-0.00057749	-2.7783	-0.0016276	-3.7641	-0.0022051	585.8276844510794	99.625	0.99191	98.795	98.467	99.459	-0.83052	0.022817	0.00015292	NaN	54.722	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116000			39942	1472	32961	32985							0.06642274057185205
NKASPPFPLIS	11	Unmodified	_NKASPPFPLIS_					0	0	0		ENSG00000072415|ENST00000261681|PALS1;nc|ENSG00000072415|Q8N3R9-2|PALS1	ENSG00000072415|ENST00000261681|PALS1	ENSG00000072415|ENST00000261681|PALS1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	585.829506	1169.64446	-2.1094	-0.0012357	-2.9306	-0.0017168	-5.0399	-0.0029525	585.8276123956376	100.4	0.83471	98.798	98.612	99.446	-1.6053	0.025981	-2.5425E-05	NaN	54.722	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162600			39943	1472	32961	32985							0.06642274057185205
NKASPRRL	8	Unmodified	_NKASPRRL_					0	0	0		nc|ENSG00000124783|P43307-2|SSR1;ENSG00000124783|ENST00000244763|SSR1	nc|ENSG00000124783|P43307-2|SSR1	nc|ENSG00000124783|P43307-2|SSR1	MULTI-MSMS	OvCa99_classI_Rep5	1	471.2884521484375	2	471.2856	940.556647	0.39577	0.00018652	2.9083	0.0013706	3.3041	0.0015572	471.2868394335814	72.34	7.0488	72.34	69.552	76.6	0					308	176	2	0	0	0	0.45246	1	7129	7129		82.305	2.5924	1	3030900			39944	3679	32962	32986	43340	43340					0.08399117977091919
NKATGSLKP	9	Unmodified	_NKATGSLKP_					0	0	0		ENST00000265087.8_1_5:172743950-172744151:-|nuORF	ENST00000265087.8_1_5:172743950-172744151:-|nuORF	ENST00000265087.8_1_5:172743950-172744151:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	457.272216796875	2	458.266542	914.51853	-1.3687	-0.00062722	-1.8132	-0.00083091	-3.1818	-0.0014581	458.26539749708365	72.848	1.3114	69.452	68.716	70.027	-3.3961					43	26	3	0	0	0	0.027462	1	5547	5547		37.159	0	1	82787			39945	9944	32963	32987	43341	43341					0.05785187271749237
NKAVAPLIKG	10	Unmodified	_NKAVAPLIKG_					0	0	0		ENSG00000226650|ENST00000435029|KIF4B	ENSG00000226650|ENST00000435029|KIF4B	ENSG00000226650|ENST00000435029|KIF4B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.3330993652344	2	505.821484	1009.62842	-0.20409	-0.00010323	0.33284	0.00016836	0.12875	6.5122E-05	505.82126629074946	56.998	0.50822	53.653	53.476	53.985	-3.3449					12	9	2	0	0	0	0.027056	1	3712	3712		20.947	0	1	25095			39946	9272	32964	32988	43342	43342					0.12398612610945747
NKAVLLPIG	9	Unmodified	_NKAVLLPIG_					0	0	0			REV__tr|A0A553SNT4|A0A553SNT4_NIACIRibonucleaseOS=NialliacirculansOX=1397GN=CEQ21_25190PE=4SV=1	REV__tr|A0A553SNT4|A0A553SNT4_NIACIRibonucleaseOS=NialliacirculansOX=1397GN=CEQ21_25190PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	462.7987365722656	2	462.797478	923.580402	1.742	0.00080617	0.83434	0.00038613	2.5763	0.0011923	462.7977362031167	92.463	0.50211	92.463	92.26	92.762	0					17	11	2	0	0	0	0.42057	1	9997	9997		50.025	9.4519	1	388490	+		39947	30450	32965	32989	43343	43343					0.11555538690902267
NKAVSIGQP	9	Unmodified	_NKAVSIGQP_					0	0	0		HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|169|3|sense	HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|169|3|sense	HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|169|3|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	457.272216796875	2	457.258717	912.50288	-1.0473	-0.0004789	1.8201	0.00083224	0.77273	0.00035334	457.25914815473806	72.108	0.82874	68.652	68.364	69.193	-3.4563					20	16	2	0	0	0	0.027447	1	5547	5547		47.657	0	1	33957			39948	14424	32966	32990	43344	43344					0.043129007547122455
NKAWEKLYKEF	11	Unmodified	_NKAWEKLYKEF_					0	0	0		tr|A0A553SS72|A0A553SS72_NIACIDUF2716domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02410PE=4SV=1	tr|A0A553SS72|A0A553SS72_NIACIDUF2716domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02410PE=4SV=1	tr|A0A553SS72|A0A553SS72_NIACIDUF2716domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02410PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.8150329589844	3	485.925877	1454.7558	0.073635	3.5781E-05	1.5237	0.0007404	1.5973	0.00077618	486.26031837285007	57.304	1.4687	53.959	53.679	55.148	-3.3449					42	28	2	0	0	0	0.026113	1	3764	3764		9.2118	0	1	181890			39949	34339	32967	32991	43345	43345					0.04661288694455834
NKCINILCQ	9	Unmodified	_NKCINILCQ_					0	0	0			REV__tr|A0A553SLJ5|A0A553SLJ5_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_20745PE=4SV=1	REV__tr|A0A553SLJ5|A0A553SLJ5_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_20745PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.7696533203125	2	524.767537	1047.52052	1.7914	0.00094008	0.89631	0.00047035	2.6877	0.0014104	524.7681164746734	136.65	0.77441	135.11	134.89	135.67	-1.5437					20	15	2	0	0	0	0.53957	1	13279	13279		38.806	1.7777	1	51474	+		39950	30229	32968	32992	43346	43346					-0.0013384330632106867
NKCIRNLL	8	Unmodified	_NKCIRNLL_					0	0	0		tr|A0A7D7A2Q6|A0A7D7A2Q6_9CLOTZ1domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09480PE=4SV=1	tr|A0A7D7A2Q6|A0A7D7A2Q6_9CLOTZ1domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09480PE=4SV=1	tr|A0A7D7A2Q6|A0A7D7A2Q6_9CLOTZ1domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09480PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	487.2831115722656	2	487.284211	972.55387	0.70873	0.00034535	-3.3168	-0.0016162	-2.6081	-0.0012709	487.282420081065	141.94	0.89906	141.94	141.44	142.34	0					38	17	3	0	0	0	0.67745	1	16600	16600		47.916	1.9434	1	214410			39951	36088	32969	32993	43347	43347					0.06649526527905891
NKCLAMSII	9	Oxidation (M)	_NKCLAM(Oxidation (M))SII_		NKCLAM(1)SII		NKCLAM(61)SII	0	0	1			REV__ENSG00000186714|ENST00000335185|CCDC73	REV__ENSG00000186714|ENST00000335185|CCDC73	MULTI-MSMS	OvCa99_classI_Rep5	1	504.76629638671875	2	504.764463	1007.51437	0.64514	0.00032564	3.5697	0.0018018	4.2148	0.0021275	504.76674815816307	140.58	0.95975	140.58	140.02	140.98	0					24	19	2	0	0	0	0.31747	1	16440	16440		60.972	7.6205	1	38730	+		39952	22608	32970	32994	43348	43348		520			0.010916384621964426
NKCLAMSII	9	Oxidation (M)	_NKCLAM(Oxidation (M))SII_					0	0	1			REV__ENSG00000186714|ENST00000335185|CCDC73	REV__ENSG00000186714|ENST00000335185|CCDC73	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	504.764463	1007.51437	0.64514	0.00032564	3.5697	0.0018018	4.2148	0.0021275	504.76674815816307	140.58	0.95975	140.58	140.02	140.98	0	0	0	NaN	60.972	24	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38730	+		39953	22608	32970	32994				520			0.010916384621964426
NKDDISFNK	9	Unmodified	_NKDDISFNK_					0	0	0			REV__tr|A0A7D6VU55|A0A7D6VU55_9CLOTDihydrofolatereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00505PE=3SV=1	REV__tr|A0A7D6VU55|A0A7D6VU55_9CLOTDihydrofolatereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00505PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.303955078125	2	540.769645	1079.52474	0.57519	0.00031104	1.5306	0.00082772	2.1058	0.0011388	540.7699991284785	74.315	0.38271	74.315	74.095	74.478	0					16	9	2	0	0	0	0.02744	1	7310	7310		44.377	14.059	1	342170	+		39954	31650	32971	32995	43349	43349					-0.011843392873970515
NKDDISFNK	9	Unmodified	_NKDDISFNK_					0	0	0			REV__tr|A0A7D6VU55|A0A7D6VU55_9CLOTDihydrofolatereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00505PE=3SV=1	REV__tr|A0A7D6VU55|A0A7D6VU55_9CLOTDihydrofolatereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00505PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	540.769645	1079.52474	-1.2389	-0.00066993	-1.6097	-0.00087049	-2.8486	-0.0015404	541.2698708834853	76.038	0.57864	74.184	73.887	74.466	-1.854	-0.074769	-0.00075589	NaN	44.377	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14806	+		39955	31650	32971	32995							-0.011843392873970515
NKDDLVQSI	9	Unmodified	_NKDDLVQSI_					0	0	0			REV__ENST00000564150.1_1_16:58147931-58149427:-|nuORF	REV__ENST00000564150.1_1_16:58147931-58149427:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.7877807617188	2	516.272021	1030.52949	0.080335	4.1475E-05	3.8952	0.002011	3.9755	0.0020524	516.273285934336	78.277	0.55219	75.924	75.546	76.098	-2.3527					15	10	2	0	0	0	0.027402	1	4153	4153		39.253	0	1	18929	+		39956	27664	32972	32996	43350	43350					0.015445448553691676
NKDEHVSLN	9	Unmodified	_NKDEHVSLN_					0	0	0			REV__ENSG00000155980|ENST00000455537|KIF5A	REV__ENSG00000155980|ENST00000455537|KIF5A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.833251953125	2	528.259445	1054.50434	-0.9023	-0.00047665	-2.7443	-0.0014497	-3.6466	-0.0019264	528.25795920677	105.59	1.3607	103.57	102.85	104.21	-2.0161					34	26	2	0	0	0	0.027425	1	9604	9604		51.193	10.415	1	21797	+		39957	20456	32973	32997	43351	43351					-0.02073509947194907
NKDEHVSLN	9	Unmodified	_NKDEHVSLN_					0	0	0			REV__ENSG00000155980|ENST00000455537|KIF5A	REV__ENSG00000155980|ENST00000455537|KIF5A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	528.259445	1054.50434	0.01937	1.0232E-05	-3.7765	-0.001995	-3.7572	-0.0019848	528.2573982442304	104.96	0.83284	103.61	103.31	104.15	-1.3482	0.021018	-0.00055422	NaN	51.193	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18639	+		39958	20456	32973	32997							-0.02073509947194907
NKDELIIYE	9	Unmodified	_NKDELIIYE_					0	0	0		tr|A0A7D6ZEI4|A0A7D6ZEI4_9CLOTC40familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13795PE=4SV=1	tr|A0A7D6ZEI4|A0A7D6ZEI4_9CLOTC40familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13795PE=4SV=1	tr|A0A7D6ZEI4|A0A7D6ZEI4_9CLOTC40familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13795PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.8427124023438	2	568.795329	1135.5761	2.1558	0.0012262	0.48109	0.00027364	2.6369	0.0014998	568.7950929747981	85.694	0.60902	85.694	85.544	86.153	0					24	14	3	0	0	0	0.027462	1	9041	9041		25.574	0	1	577910			39959	35483	32974	32998	43352	43352					0.01373984686665608
NKDERMIPL	9	Oxidation (M)	_NKDERM(Oxidation (M))IPL_		NKDERM(1)IPL		NKDERM(110)IPL	0	0	1		nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;DNAH10|p.N3904Vfs*37|1|0.07|ENSG00000197653|chr12:123926777-123926778|-/GGTACAGAGAAGTCCCTGCC|frameshift_variant;DNAH10|p.R2161Nfs*35|1|0.03|ENSG00000197653|chr12:123861095-123861096|-/TAACAGTGAAGGGAAG|frameshift_variant;nc|ENSG00000197653|Q8IVF4-2|DNAH10;DNAH10|p.I1041Lfs*26|1|0.09|ENSG00000197653|chr12:123813493-123813493|A/-|frameshift_variant;ENST00000467219.5_1_12:124265674-124298205:+|nuORF	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.2974243164062	2	566.294973	1130.57539	0.65693	0.00037202	2.1646	0.0012258	2.8215	0.0015978	566.2962153602747	102.09	1.5172	99.889	99.471	100.99	-2.1994					58	28	3	0	0	0	0.070405	1	9188	9188		107.01	10.817	1	297420			39960	8733	32975	32999	43353	43353		262			0.015328667659787243
NKDIPAIIV	9	Unmodified	_NKDIPAIIV_					0	0	0		tr|A0A7D6VTS9|A0A7D6VTS9_9CLOTMotilityassociatedfactorglycosyltransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22475PE=4SV=1	tr|A0A7D6VTS9|A0A7D6VTS9_9CLOTMotilityassociatedfactorglycosyltransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22475PE=4SV=1	tr|A0A7D6VTS9|A0A7D6VTS9_9CLOTMotilityassociatedfactorglycosyltransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22475PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	491.7994384765625	2	491.800217	981.585882	0.015139	7.4454E-06	-0.71075	-0.00034955	-0.69561	-0.0003421	491.79978875845774	107.24	3.4509	105.98	105.67	109.12	-1.267					161	66	5	0	0	0	0.27001	1	7649	7649		66.429	9.7082	1	2343100			39961	35139	32976	33000	43354	43354					0.09435217482689495
NKDIPAIIV	9	Unmodified	_NKDIPAIIV_					0	0	0		tr|A0A7D6VTS9|A0A7D6VTS9_9CLOTMotilityassociatedfactorglycosyltransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22475PE=4SV=1	tr|A0A7D6VTS9|A0A7D6VTS9_9CLOTMotilityassociatedfactorglycosyltransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22475PE=4SV=1	tr|A0A7D6VTS9|A0A7D6VTS9_9CLOTMotilityassociatedfactorglycosyltransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22475PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	491.8012390136719	2	491.800217	981.585882	-1.7475	-0.00085943	1.401	0.00068899	-0.34656	-0.00017044	491.80078103129136	107.83	3.5166	105.95	105.59	109.11	-1.8785					134	68	3	0	0	0	0.35444	1	9902	9902		56.721	7.2795	1	2385200			39962	35139	32976	33000	43355	43355					0.09435217482689495
NKDKELEII	9	Unmodified	_NKDKELEII_					0	0	0			REV__nc|ENSG00000132849|Q8NI35|PATJ;REV__INADL-EIF3E|1|fusion	REV__nc|ENSG00000132849|Q8NI35|PATJ	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.8261108398438	2	551.311146	1100.60774	1.9488	0.0010744	-1.0975	-0.00060509	0.8512	0.00046928	551.3098271042705	85.919	0.56846	85.919	85.585	86.153	0					16	13	2	0	0	0	0.026439	1	8996	8996		153.04	30.86	1	200710	+		39963	19108;28305	32977	33001	43356	43356					0.06145977440610295
NKDLDKALL	9	Unmodified	_NKDLDKALL_					0	0	0		nc|ENSG00000134240|P54868-3|HMGCS2;nc|ENSG00000134240|P54868-2|HMGCS2;ENSG00000134240|ENST00000369406|HMGCS2	nc|ENSG00000134240|P54868-3|HMGCS2	nc|ENSG00000134240|P54868-3|HMGCS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.296875	2	515.300581	1028.58661	-0.50013	-0.00025772	0.54002	0.00027827	0.039894	2.0557E-05	515.3008077340658	104.73	1.3153	102.61	102.38	103.69	-2.1192					43	25	2	0	0	0	0.2422	1	9479	9479		69.628	5.4204	1	436850			39964	4265	32978	33002	43357	43357					0.07346012131756652
NKDLGIIYI	9	Unmodified	_NKDLGIIYI_					0	0	0		ENST00000272444.7_1_2:73989885-73993985:-|nuORF	ENST00000272444.7_1_2:73989885-73993985:-|nuORF	ENST00000272444.7_1_2:73989885-73993985:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	524.8047485351562	2	524.8055	1047.59645	0.75625	0.00039688	-1.5948	-0.00083698	-0.83859	-0.0004401	524.8046333600537	91.954	3.2465	90.719	90.272	93.519	-1.2355					182	62	5	0	0	0	0.29717	1	8233	8233		63.306	3.188	1	5304800			39965	9997	32979	33003	43358	43358					0.07455200137110296
NKDLWKIV	8	Unmodified	_NKDLWKIV_					0	0	0			REV__ENST00000443628.2_1_X:114009389-114009617:-|nuORF	REV__ENST00000443628.2_1_X:114009389-114009617:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.81341552734375	2	508.300384	1014.58622	-0.71711	-0.00036451	0.50989	0.00025918	-0.20722	-0.00010533	508.300510413995	108.99	1.5024	107.26	107.02	108.52	-1.7256					71	28	3	0	0	0	0.028476	1	10058	10058		82.305	0	1	132520	+		39966	25872	32980	33004	43359	43359					0.07950637202543476
NKDNYEEV	8	Unmodified	_NKDNYEEV_					0	0	0		tr|A0A7D6ZFM3|A0A7D6ZFM3_9CLOTcarbonicanhydraseOS=ClostridiumintestinaleOX=36845GN=HZF06_15575PE=3SV=1	tr|A0A7D6ZFM3|A0A7D6ZFM3_9CLOTcarbonicanhydraseOS=ClostridiumintestinaleOX=36845GN=HZF06_15575PE=3SV=1	tr|A0A7D6ZFM3|A0A7D6ZFM3_9CLOTcarbonicanhydraseOS=ClostridiumintestinaleOX=36845GN=HZF06_15575PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.2789001464844	2	505.724904	1009.43525	0.92286	0.00046671	-3.4611	-0.0017504	-2.5382	-0.0012837	505.7232679855275	101.44	0.41516	101.44	101.23	101.65	0					11	9	2	0	0	0	0.028476	1	11256	11256		19.36	0	1	101820			39967	35516	32981	33005	43360	43360					-0.069085939667616
NKDQITNIF	9	Unmodified	_NKDQITNIF_					0	0	0		nc|ENSG00000122188|Q8IWV1-3|LAX1;ENSG00000122188|ENST00000442561|LAX1	nc|ENSG00000122188|Q8IWV1-3|LAX1	nc|ENSG00000122188|Q8IWV1-3|LAX1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.3214111328125	2	546.787838	1091.56112	0.61778	0.00033779	1.4116	0.00077185	2.0294	0.0011096	546.788931232996	141.7	0.95422	141.7	141.08	142.04	0					21	18	2	0	0	0	0.027453	1	16486	16486		45.972	0	1	17620			39968	3522	32982	33006	43361	43361					0.019005376092991355
NKDSSSKNLI	10	Unmodified	_NKDSSSKNLI_					0	0	0		ST6GAL1|p.D265Efs*77|1|0.04|ENSG00000073849|chr3:187072937-187072938|-/GAGCCTATGTCAGTCTCCATCAGGATGTG|frameshift_variant;ST6GAL1|p.Y354Sfs*9|1|0.03|ENSG00000073849|chr3:187075642-187075643|-/C|frameshift_variant;ENSG00000073849|ENST00000169298|ST6GAL1;chr3:186930834-186942348|390|12.17|0.73|4.05|+|ENST00000677292|ST6GAL1,ST6GAL1	ST6GAL1|p.D265Efs*77|1|0.04|ENSG00000073849|chr3:187072937-187072938|-/GAGCCTATGTCAGTCTCCATCAGGATGTG|frameshift_variant	ST6GAL1|p.D265Efs*77|1|0.04|ENSG00000073849|chr3:187072937-187072938|-/GAGCCTATGTCAGTCTCCATCAGGATGTG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.297607421875	2	553.296027	1104.5775	-0.058927	-3.2604E-05	3.576	0.0019786	3.517	0.001946	553.2978150854092	123.58	0.98997	122.21	121.9	122.89	-1.3666					47	19	4	0	0	0	0.42082	1	11712	11712		65.465	7.2355	1	186630			39969	481	32983	33007	43362	43362					0.02939618775440067
NKDSTLEPLI	10	Unmodified	_NKDSTLEPLI_					0	0	0			REV__ENST00000513016.5_1_5:82832752-82876250:+|nuORF	REV__ENST00000513016.5_1_5:82832752-82876250:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	565.3047485351562	2	565.308603	1128.60265	2.6242	0.0014835	-0.80265	-0.00045375	1.8215	0.0010297	565.3081362905557	96.564	1.3578	96.564	96.253	97.611	0					109	31	5	0	0	0	0.19075	1	10686	10686		95.815	2.6719	1	77648000	+		39970	16619	32984	33008	43363	43363					0.04349673578008151
NKDSTLEPLI	10	Unmodified	_NKDSTLEPLI_					0	0	0			REV__ENST00000513016.5_1_5:82832752-82876250:+|nuORF	REV__ENST00000513016.5_1_5:82832752-82876250:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	565.307373046875	2	565.308603	1128.60265	0.20207	0.00011423	-1.6397	-0.00092695	-1.4377	-0.00081272	565.3076159501649	96.83	2.3607	95.871	95.481	97.841	-0.95857					161	47	5	0	0	0	0.3094	1	8838	8838		79.713	0	1	3204400	+		39971	16619	32984	33008	43364	43364					0.04349673578008151
NKDVLNALDDY	11	Unmodified	_NKDVLNALDDY_					0	0	0			REV__tr|A0A7D6VRY2|A0A7D6VRY2_9CLOTPyruvate:ferredoxinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=nifJPE=3SV=1	REV__tr|A0A7D6VRY2|A0A7D6VRY2_9CLOTPyruvate:ferredoxinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=nifJPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	427.7597351074219	3	427.210342	1278.6092	0.078549	3.3557E-05	-2.3864	-0.0010195	-2.3079	-0.00098594	427.2092803752882	63.632	0.47985	63.632	63.455	63.935	0					22	11	3	0	0	0	0.025568	1	5728	5728		39.873	0	1	370440	+		39972	31454	32985	33009	43365	43365					-0.018964332612767976
NKEAELHVAL	10	Unmodified	_NKEAELHVAL_					0	0	0			REV__nc|ENSG00000144674|Q13439-3|GOLGA4	REV__nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	OvCa9_classI_Rep3	3	562.3088989257812	2	562.308938	1122.60332	1.5394	0.00086559	-2.1909	-0.001232	-0.65156	-0.00036638	562.3077246081845	112.34	2.7945	111.26	110.13	112.92	-1.0753					115	55	5	0	0	0	0.52321	1	8237	8237		51.335	0.14276	1	1502900	+		39973	19927	32986	33010	43366	43366					0.04692513017721467
NKEALWDI	8	Unmodified	_NKEALWDI_					0	0	0			REV__tr|A0A553SSC7|A0A553SSC7_NIACIPF03932familyproteinCutCOS=NialliacirculansOX=1397GN=cutCPE=3SV=1	REV__tr|A0A553SSC7|A0A553SSC7_NIACIPF03932familyproteinCutCOS=NialliacirculansOX=1397GN=cutCPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.7839050292969	2	494.758549	987.502546	0.074465	3.6842E-05	3.7122	0.0018366	3.7867	0.0018735	494.76014432745603	71.832	0.619	71.832	71.589	72.208	0					25	14	3	0	0	0	0.028476	1	7019	7019		24.203	0	1	866140	+		39974	30821	32987	33011	43367	43367					0.008294810348388637
NKEDIVAL	8	Unmodified	_NKEDIVAL_					0	0	0			REV__ENSG00000166479|ENST00000299608|TMX3	REV__ENSG00000166479|ENST00000299608|TMX3	MSMS	OvCa99_classI_Rep5	1	451.2558288574219	2	451.2531	900.491647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	76.167	1	76.167	75.667	76.667	0								0	0	0	0.30129	1	7621	7621		65.803	2.4969	1		+		39975	21198	32988	33012	43368	43368					0.03742078660570769
NKEEELLEK	9	Unmodified	_NKEEELLEK_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3;DNAH3|p.T2544Ifs*7|1|0.16|ENSG00000158486|chr16:20985111-20985112|-/A|frameshift_variant;nc|ENSG00000158486|Q8TD57-3|DNAH3;DNAH3|p.L2088Pfs*41|1|0.69|ENSG00000158486|chr16:21000370-21000382|GGAAGGTGGAGAA/-|frameshift_variant;DNAH3|p.L917Ffs*10|1|0.04|ENSG00000158486|chr16:21086975-21086975|C/-|frameshift_variant	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.298095703125	2	566.298236	1130.58192	0.65693	0.00037202	-3.5967	-0.0020368	-2.9397	-0.0016648	566.2962153602747	102.09	1.5172	99.889	99.471	100.99	-2.1994					58	28	3	0	0	0	0.2077	1	9168	9168		75.043	5.4157	1	297420			39976	5956	32989	33013	43369	43369					0.021850831983556418
NKEGIWLI	8	Unmodified	_NKEGIWLI_					0	0	0		tr|A0A553SJQ3|A0A553SJQ3_NIACI1,4-alpha-glucanbranchingenzymeGlgBOS=NialliacirculansOX=1397GN=glgBPE=3SV=1	tr|A0A553SJQ3|A0A553SJQ3_NIACI1,4-alpha-glucanbranchingenzymeGlgBOS=NialliacirculansOX=1397GN=glgBPE=3SV=1	tr|A0A553SJQ3|A0A553SJQ3_NIACI1,4-alpha-glucanbranchingenzymeGlgBOS=NialliacirculansOX=1397GN=glgBPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	486.7787780761719	2	486.779285	971.544017	0.95956	0.0004671	1.0045	0.00048899	1.9641	0.00095609	486.77976141477177	139.31	0.53316	139.31	139.03	139.56	0					21	10	3	0	0	0	0.73205	1	16261	16261		35.618	1.4457	1	87788			39977	33529	32990	33014	43370	43370					0.057106617941940385
NKEIYKPLL	9	Unmodified	_NKEIYKPLL_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-MSMS	OvCa9_classI_Rep3	3	559.3355102539062	2	559.334424	1116.6543	0.059927	3.3519E-05	-1.326	-0.00074165	-1.266	-0.00070813	559.3337743770333	105.67	2.6036	104.33	103.89	106.49	-1.3482					139	50	4	0	0	0	0.48047	1	7493	7493		44.377	0.7264	1	6929000			39978	3337	32991	33015	43371	43371					0.10063462062566941
NKEKAMKVL	9	Unmodified	_NKEKAMKVL_					0	0	0		tr|A0A553SI72|A0A553SI72_NIACIPeptidechainreleasefactor1OS=NialliacirculansOX=1397GN=prfAPE=3SV=1	tr|A0A553SI72|A0A553SI72_NIACIPeptidechainreleasefactor1OS=NialliacirculansOX=1397GN=prfAPE=3SV=1	tr|A0A553SI72|A0A553SI72_NIACIPeptidechainreleasefactor1OS=NialliacirculansOX=1397GN=prfAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	530.80908203125	2	530.812802	1059.61105	0.34487	0.00018306	0.19251	0.00010218	0.53737	0.00028524	530.8127589207236	128.23	1.7294	128.01	127.69	129.42	-0.22696					65	34	3	0	0	0	0.50149	1	12570	12570		42.396	1.618	1	105520			39979	33352	32992	33016	43372	43372					0.08362949013621801
NKEKEEELL	9	Unmodified	_NKEKEEELL_					0	0	0			REV__ENSG00000147100|ENST00000587091|SLC16A2	REV__ENSG00000147100|ENST00000587091|SLC16A2	MULTI-MSMS	OvCa9_classI_Rep3	3	566.2985229492188	2	566.298236	1130.58192	-1.1574	-0.00065545	-1.3633	-0.00077201	-2.5207	-0.0014275	566.2974538113468	101.45	1.4662	99.844	99.395	100.86	-1.6053					55	27	3	0	0	0	0.3249	1	6946	6946		60.118	5.3419	1	319970	+		39980	20042	32993	33017	43373	43373					0.021850831983556418
NKEKLFALD	9	Unmodified	_NKEKLFALD_					0	0	0		tr|A0A553SJY7|A0A553SJY7_NIACICelldivisionproteinFtsAOS=NialliacirculansOX=1397GN=CEQ21_17585PE=4SV=1	tr|A0A553SJY7|A0A553SJY7_NIACICelldivisionproteinFtsAOS=NialliacirculansOX=1397GN=CEQ21_17585PE=4SV=1	tr|A0A553SJY7|A0A553SJY7_NIACICelldivisionproteinFtsAOS=NialliacirculansOX=1397GN=CEQ21_17585PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.7823486328125	2	539.300581	1076.58661	0.11638	6.2766E-05	1.1636	0.00062752	1.28	0.00069029	539.3012327884107	105.39	1.0518	105.39	104.87	105.92	0					35	23	3	0	0	0	0.027462	1	11814	11814		37.812	0	1	963500			39981	33553	32994	33018	43374	43374					0.05138012131760661
NKEKNNIFE	9	Unmodified	_NKEKNNIFE_					0	0	0			REV__tr|A0A7D7A0D3|A0A7D7A0D3_9CLOTSpo0Efamilysporulationregulatoryprotein-asparticacidphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_23565PE=4SV=1	REV__tr|A0A7D7A0D3|A0A7D7A0D3_9CLOTSpo0Efamilysporulationregulatoryprotein-asparticacidphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_23565PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.326416015625	2	568.290745	1134.56694	2.1544	0.0012243	2.5427	0.001445	4.6971	0.0026693	568.7942708701713	112.89	0.31655	112.89	112.7	113.02	0					9	6	2	0	0	0	0.02741	1	12839	12839		60.972	7.6205	1	129830	+		39982	32445	32995	33019	43375	43375					0.005036361209931783
NKEKRYMN	8	Unmodified	_NKEKRYMN_					0	0	0			REV__ENSG00000204449|ENST00000448984|TRIM49C	REV__ENSG00000204449|ENST00000448984|TRIM49C	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.8349609375	2	541.774208	1081.53386	0.86069	0.0004663	-2.5659	-0.0013902	-1.7052	-0.00092386	541.7727087160803	131.94	0.46704	131.94	131.76	132.23	0					15	9	2	0	0	0	0.028476	1	15349	15349		33.516	10.479	1	115540	+		39983	21420	32996	33020	43376	43376					-0.0036426920269150287
NKEKSSVSK	9	Unmodified	_NKEKSSVSK_					0	0	0			REV__ENSG00000153498|ENST00000283550|SPACA7	REV__ENSG00000153498|ENST00000283550|SPACA7	MULTI-MSMS	OvCa9_classI_Rep2	2	503.77813720703125	2	503.780013	1005.54547	-3.0867	-0.001555	0.499	0.00025139	-2.5877	-0.0013036	503.78006253314857	36.309	2.2758	33.6	32.75	35.026	-2.7097					126	45	4	0	0	0	0.51865	1	1563	1563		40.778	1.972	1	296190	+		39984	20341	32997	33021	43377	43377					0.042922510922949186
NKEKTKLL	8	Unmodified	_NKEKTKLL_					0	0	0			REV__nc|ENSG00000126775|Q6ZNE5-2|ATG14	REV__nc|ENSG00000126775|Q6ZNE5-2|ATG14	MULTI-MSMS	OvCa99_classI_Rep5	1	487.3072814941406	2	487.305667	972.596781	0.6678	0.00032542	0.9274	0.00045193	1.5952	0.00077735	487.30605467839615	103.28	0.7964	103.28	103.05	103.85	0					36	18	3	0	0	0	0.53531	1	11539	11539		73.975	2.679	1	1328700	+		39985	18794	32998	33022	43378	43378					0.10938619856995047
NKEKTKLL	8	Unmodified	_NKEKTKLL_					0	0	0			REV__nc|ENSG00000126775|Q6ZNE5-2|ATG14	REV__nc|ENSG00000126775|Q6ZNE5-2|ATG14	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.28125	2	487.305667	972.596781	0.40969	0.00019964	2.1631	0.0010541	2.5728	0.0012537	487.3084766749717	97	0.73595	96.041	95.678	96.414	-0.95857					19	14	2	0	0	0	0.028476	1	8787	8787		111.65	0	1	12985	+		39986	18794	32998	33022	43379	43379					0.10938619856995047
NKEKTKLL	8	Unmodified	_NKEKTKLL_					0	0	0			REV__nc|ENSG00000126775|Q6ZNE5-2|ATG14	REV__nc|ENSG00000126775|Q6ZNE5-2|ATG14	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	487.305667	972.596781	0.6678	0.00032542	0.9274	0.00045193	1.5952	0.00077735	487.30605467839615	103.28	0.7964	103.28	103.05	103.85	0	0	0	NaN	73.975	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1328700	+		39987	18794	32998	33022							0.10938619856995047
NKELPRPSWCL	11	Unmodified	_NKELPRPSWCL_					0	0	0			REV__ENST00000484934.1_1_7:99971228-99972163:+|nuORF	REV__ENST00000484934.1_1_7:99971228-99972163:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	447.7627258300781	3	448.236057	1341.68634	-0.60014	-0.000269	-3.0915	-0.0013857	-3.6916	-0.0016547	448.56787389073247	42.648	0.57199	39.668	39.361	39.933	-2.9804					13	10	2	0	0	0	0.025995	1	1964	1964		36.318	13.756	1	10133	+		39988	26555	32999	33023	43380	43380					0.029165064740709568
NKENKIIDI	9	Unmodified	_NKENKIIDI_					0	0	0		tr|A0A7D6ZRG3|A0A7D6ZRG3_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03695PE=4SV=1	tr|A0A7D6ZRG3|A0A7D6ZRG3_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03695PE=4SV=1	tr|A0A7D6ZRG3|A0A7D6ZRG3_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03695PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	543.8106079101562	2	543.811313	1085.60807	0.061836	3.3627E-05	-0.35552	-0.00019333	-0.29368	-0.00015971	543.8110823033019	113.47	1.4323	113.35	113.07	114.5	-0.11777					61	28	4	0	0	0	0.17606	1	10783	10783		80.455	7.5754	1	171940			39989	35715	33000	33024	43381	43381					0.06869397160471635
NKERNVLAIR	10	Unmodified	_NKERNVLAIR_					0	0	0		ENST00000269214.9_1_18:19155190-19155674:-|nuORF	ENST00000269214.9_1_18:19155190-19155674:-|nuORF	ENST00000269214.9_1_18:19155190-19155674:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	404.9108581542969	3	404.910561	1211.70985	0.97217	0.00039364	-0.97002	-0.00039277	0.0021464	8.691E-07	404.9101904577938	58.692	1.0744	55.912	55.588	56.662	-2.7801					70	20	4	0	0	0	0.62744	2	4247	4247;4252		38.714	4.7925	1	576540			39990	9982	33001	33025	43382;43383	43382					0.11246688302867369
NKESQQLPA	9	Unmodified	_NKESQQLPA_					0	0	0		ENST00000440190.1_1_1:39988131-40011451:-|nuORF;ENST00000417869.5_1_1:39988131-40011420:-|nuORF	ENST00000440190.1_1_1:39988131-40011451:-|nuORF	ENST00000440190.1_1_1:39988131-40011451:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	507.7666931152344	2	507.764363	1013.51417	-0.36325	-0.00018445	4.3065	0.0021867	3.9433	0.0020023	507.76638761877894	131.88	1.6751	130.75	129.96	131.63	-1.1249					88	33	4	0	0	0	0.46377	1	10527	10527		45.952	6.6991	1	127470			39991	11628	33002	33026	43384	43384					0.007956780581935163
NKEVRVAG	8	Unmodified	_NKEVRVAG_					0	0	0			REV__INSRR|p.A1268Gfs*13|1|0.08|ENSG00000027644|chr1:156840964-156840965|-/C|frameshift_variant	REV__INSRR|p.A1268Gfs*13|1|0.08|ENSG00000027644|chr1:156840964-156840965|-/C|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	436.28961181640625	2	436.751059	871.487565	0.23334	0.00010191	0.30561	0.00013348	0.53895	0.00023539	436.7510981450885	37.919	0.35433	37.919	37.806	38.161	0					9	7	2	0	0	0	0.028476	1	2125	2125		47.916	5.5195	1	142070	+		39992	16574	33003	33027	43385	43385					0.04668033957523221
NKEYIIAGTK	10	Unmodified	_NKEYIIAGTK_					0	0	0			REV__tr|A0A553SMT6|A0A553SMT6_NIACID-alanyl-D-alaninecarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_23195PE=3SV=1	REV__tr|A0A553SMT6|A0A553SMT6_NIACID-alanyl-D-alaninecarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_23195PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	567.8477172851562	2	568.819138	1135.62372	-0.027236	-1.5492E-05	0.27374	0.00015571	0.24651	0.00014022	568.8191600097563	71.862	1.1496	69.355	69.016	70.165	-2.5071					47	21	3	0	0	0	0.027001	1	5775	5775		11.097	0	1	417010	+		39993	30370	33004	33028	43386	43386					0.061336836774898984
NKFEDMWVEA	10	Unmodified	_NKFEDMWVEA_					0	0	0			REV__ENSG00000141429|ENST00000269195|GALNT1	REV__ENSG00000141429|ENST00000269195|GALNT1	MULTI-MSMS	OvCa99_classI_Rep5	1	634.7861938476562	2	634.784438	1267.55432	1.2134	0.00077026	3.4339	0.0021798	4.6473	0.00295	634.7866132098046	142.15	0.6015	142.15	141.93	142.54	0					23	11	3	0	0	0	0.6349	1	16612	16612		37.812	4.9991	1	110500	+		39994	19736	33005	33029	43387	43387					-0.06875143333536471
NKFIKVISN	9	Unmodified	_NKFIKVISN_					0	0	0			REV__COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant	REV__COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8164672851562	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.64427	1	14057	14057		26.693	5.746	1	166960	+		39995	16227	33006	33030	43388	43388					0.09498308748356976
NKFIKVISN	9	Unmodified	_NKFIKVISN_					0	0	0			REV__COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant	REV__COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8187255859375	2	531.818941	1061.62333	0.089047	4.7357E-05	-3.7428	-0.0019905	-3.6538	-0.0019431	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.63422	1	13553	13553		27.882	1.1893	1	263230	+		39996	16227	33006	33030	43389	43389					0.09498308748356976
NKFILVILI	9	Unmodified	_NKFILVILI_					0	0	0			REV__ENST00000424479.6_1_8:38121954-38122002:-|nuORF	REV__ENST00000424479.6_1_8:38121954-38122002:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.275390625	2	536.860078	1071.7056	2.4631	0.0013223	-0.066925	-3.5929E-05	2.3962	0.0012864	536.8600267455182	98.829	0.69301	98.829	98.461	99.154	0					21	16	2	0	0	0	0.027462	1	10946	10946		25.45	1.2474	1	206160	+		39997	25645	33007	33031	43390	43390					0.1726183082728312
NKFKNYSSL	9	Unmodified	_NKFKNYSSL_					0	0	0			REV__ENSG00000268104|ENST00000598581|SLC6A14	REV__ENSG00000268104|ENST00000598581|SLC6A14	MULTI-MSMS	OvCa99_classI_Rep5	1	550.7915649414062	2	550.790381	1099.56621	1.2277	0.00067622	-0.24338	-0.00013405	0.98434	0.00054217	550.7900275313033	111.22	1.1277	111.22	110.89	112.02	0					35	24	2	0	0	0	0.1804	1	12644	12644		79.713	2.395	1	433090	+		39998	23595	33008	33032	43391	43391					0.02040841471944077
NKFKNYSSL	9	Unmodified	_NKFKNYSSL_					0	0	0			REV__ENSG00000268104|ENST00000598581|SLC6A14	REV__ENSG00000268104|ENST00000598581|SLC6A14	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	550.790381	1099.56621	1.2277	0.00067622	-0.24338	-0.00013405	0.98434	0.00054217	550.7900275313033	111.22	1.1277	111.22	110.89	112.02	0	0	0	NaN	79.713	35	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	433090	+		39999	23595	33008	33032							0.02040841471944077
NKFLCYADT	9	Unmodified	_NKFLCYADT_					0	0	0		nc|ENSG00000178568|Q15303-4|ERBB4;nc|ENSG00000178568|Q15303-3|ERBB4;nc|ENSG00000178568|Q15303-2|ERBB4;ENSG00000178568|ENST00000342788|ERBB4;ENST00000484594.5_1_2:212426591-213403254:-|nuORF	nc|ENSG00000178568|Q15303-4|ERBB4	nc|ENSG00000178568|Q15303-4|ERBB4	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.8291015625	2	537.749867	1073.48518	-0.61606	-0.00033129	0.98579	0.00053011	0.36973	0.00019882	537.75015842406	123.57	0.54049	123.34	123.09	123.63	-0.23193					15	10	2	0	0	0	0.027462	1	11983	11983		37.159	5.6293	1	11847			40000	7762	33009	33033	43392	43392					-0.04862182562465023
NKFLHLPVI	9	Unmodified	_NKFLHLPVI_					0	0	0			REV__tr|A0A553SS00|A0A553SS00_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_02145PE=4SV=1	REV__tr|A0A553SS00|A0A553SS00_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_02145PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	540.8330078125	2	540.831852	1079.64915	2.013	0.0010887	-2.9636	-0.0016028	-0.9506	-0.00051411	540.8302826822948	124.41	3.5435	123.37	123.03	126.57	-1.0377					194	67	5	0	0	0	0.50066	1	9628	9628		42.474	0.078325	1	8697600	+		40001	30784	33010	33034	43393	43393					0.11251202990615639
NKFLHLPVI	9	Unmodified	_NKFLHLPVI_					0	0	0			REV__tr|A0A553SS00|A0A553SS00_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_02145PE=4SV=1	REV__tr|A0A553SS00|A0A553SS00_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_02145PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.8319091796875	2	540.831852	1079.64915	-2.0025	-0.001083	1.179	0.00063766	-0.82347	-0.00044536	540.8325567076699	124.8	3.4681	123.41	123.02	126.49	-1.3908					189	68	4	0	0	0	0.52083	3	11856	11832;11856;11868		40.573	11.423	1	9581200	+		40002	30784	33010	33034	43394;43395;43396	43395					0.11251202990615639
NKFLSKTGI	9	Unmodified	_NKFLSKTGI_					0	0	0		nc|ENSG00000103544|Q7Z3J2-2|VPS35L;ENSG00000103544|ENST00000417362|VPS35L;ENST00000535164.5_1_16:19612936-19627472:+|nuORF	nc|ENSG00000103544|Q7Z3J2-2|VPS35L	nc|ENSG00000103544|Q7Z3J2-2|VPS35L	MULTI-MSMS	OvCa9_classI_Rep3	3	504.29840087890625	2	504.297842	1006.58113	-0.082287	-4.1497E-05	-0.36053	-0.00018182	-0.44282	-0.00022331	504.2976378271559	104.41	3.9037	102.97	102.5	106.4	-1.4347					184	75	5	0	0	0	0.50149	1	7346	7346		42.396	3.59	1	927760			40003	2328	33011	33035	43397	43397					0.07810333339955378
NKFNDILKK	9	Unmodified	_NKFNDILKK_					0	0	0			REV__tr|A0A7D6ZYY2|A0A7D6ZYY2_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_18300PE=4SV=1	REV__tr|A0A7D6ZYY2|A0A7D6ZYY2_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_18300PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	559.3575439453125	2	560.329673	1118.64479	0.62391	0.00034959	-1.3321	-0.00074644	-0.70823	-0.00039684	560.3287717417988	96.909	1.4743	95.951	95.58	97.054	-0.95857					49	29	3	0	0	0	0.027462	1	8807	8807		37.812	0.65241	1	54838	+		40004	32391	33012	33036	43398	43398					0.09021693777026485
NKFQRKSRERK	11	Unmodified	_NKFQRKSRERK_					0	0	0			REV__ENSG00000163535|ENST00000357799|SGO2	REV__ENSG00000163535|ENST00000357799|SGO2	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.81854248046875	3	492.955052	1475.84333	-1.1796	-0.0005815	2.3151	0.0011413	1.1355	0.00055976	492.95628911600147	62.267	0.90952	59.508	59.236	60.146	-2.7593					25	17	2	0	0	0	0.02625	1	4641	4641		24.232	11.274	1	37584	+		40005	20849	33013	33037	43399	43399					0.12443927408594391
NKFQRKSRERK	11	Unmodified	_NKFQRKSRERK_					0	0	0			REV__ENSG00000163535|ENST00000357799|SGO2	REV__ENSG00000163535|ENST00000357799|SGO2	MULTI-MATCH	OvCa9_classI_Rep3	3		3	492.955052	1475.84333	1.2901	0.00063594	0.32979	0.00016257	1.6199	0.00079851	492.95518109384597	62.771	0.65252	59.738	59.511	60.163	-3.0339	0.031974	-0.00078277	NaN	13.508	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29709	+		40006	20849	33013	33037							0.12443927408594391
NKFVVILGGL	10	Unmodified	_NKFVVILGGL_					0	0	0		PCED1A|p.D40Gfs*35|1|0.07|ENSG00000132635|chr20:2839796-2839797|-/G|frameshift_variant	PCED1A|p.D40Gfs*35|1|0.07|ENSG00000132635|chr20:2839796-2839797|-/G|frameshift_variant	PCED1A|p.D40Gfs*35|1|0.07|ENSG00000132635|chr20:2839796-2839797|-/G|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.322509765625	2	530.331685	1058.64882	1.1303	0.00059941	0.9591	0.00050864	2.0894	0.001108	530.8339403739398	109.6	0.31206	109.6	109.46	109.77	0					8	6	2	0	0	0	0.026822	1	12428	12428		30.504	0	1	45325			40007	15482	33014	33038	43400	43400					0.12183783270779713
NKFYNVDL	8	Unmodified	_NKFYNVDL_					0	0	0		nc|ENSG00000082269|Q9P2D6-3|FAM135A;nc|ENSG00000082269|Q9P2D6-2|FAM135A;nc|ENSG00000082269|Q9P2D6-4|FAM135A;ENSG00000082269|ENST00000418814|FAM135A;FAM135A|p.W1194Cfs*23|1|0.12|ENSG00000082269|chr6:70526665-70526666|-/TTCCTGCT|frameshift_variant	nc|ENSG00000082269|Q9P2D6-3|FAM135A	nc|ENSG00000082269|Q9P2D6-3|FAM135A	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.3011474609375	2	506.758549	1011.50255	-0.33343	-0.00016897	-3.8243	-0.001938	-4.1577	-0.002107	506.75602098372326	47.825	1.1274	47.825	47.121	48.248	0					54	25	5	0	0	0	0.028476	1	3472	3472		82.305	16.502	1	844360			40008	1675	33015	33039	43401	43401					-0.0027451896515913177
NKFYVTGQP	9	Unmodified	_NKFYVTGQP_					0	0	0			REV__tr|A0A553SKY0|A0A553SKY0_NIACISigma-54factorinteractiondomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_19590PE=4SV=1	REV__tr|A0A553SKY0|A0A553SKY0_NIACISigma-54factorinteractiondomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_19590PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.8348999023438	2	527.271824	1052.5291	-1.4589	-0.00076924	-0.67742	-0.00035719	-2.1363	-0.0011264	527.2709836520696	71.158	0.6277	67.702	67.347	67.975	-3.4563					21	12	2	0	0	0	0.027185	1	5399	5399		82.241	5.4664	1	30186	+		40009	30165	33016	33040	43402	43402					0.004931699261760514
NKGALLAFYRL	11	Unmodified	_NKGALLAFYRL_					0	0	0		nc|ENSG00000122008|Q9UBT6-5|POLK	nc|ENSG00000122008|Q9UBT6-5|POLK	nc|ENSG00000122008|Q9UBT6-5|POLK	MULTI-MSMS	OvCa9_classI_Rep3	3	633.36962890625	2	633.371872	1264.72919	-4.1446	-0.0026251	-0.18183	-0.00011517	-4.3265	-0.0027403	633.3716506579397	149.94	3.0119	148.99	147.85	150.86	-0.9512					218	59	5	0	0	0	0.71498	2	12728	12728;12770		24.519	6.2571	1	281260			40010	14990	33017	33041	43403;43404	43403					0.10741644593804267
NKGALLAFYRL	11	Unmodified	_NKGALLAFYRL_					0	0	0		nc|ENSG00000122008|Q9UBT6-5|POLK	nc|ENSG00000122008|Q9UBT6-5|POLK	nc|ENSG00000122008|Q9UBT6-5|POLK	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.3673706054688	2	633.371872	1264.72919	-2.0264	-0.0012835	-2.0965	-0.0013279	-4.123	-0.0026114	633.3704245475564	148.87	1.0967	147.43	146.93	148.02	-1.4344					53	22	3	0	0	0	0.72473	2	14681	14658;14681		19.104	1.6355	1	50822			40011	14990	33017	33041	43405;43406	43406					0.10741644593804267
NKGALLAFYRL	11	Unmodified	_NKGALLAFYRL_					0	0	0		nc|ENSG00000122008|Q9UBT6-5|POLK	nc|ENSG00000122008|Q9UBT6-5|POLK	nc|ENSG00000122008|Q9UBT6-5|POLK	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.3675537109375	2	633.371872	1264.72919	-2.6571	-0.001683	-1.6654	-0.0010548	-4.3225	-0.0027377	633.3706685096566	150.42	2.9234	148.98	147.78	150.7	-1.4344					195	63	4	0	0	0	0.71498	1	14842	14842		24.519	0	1	147740			40012	14990	33017	33041	43407	43407					0.10741644593804267
NKGDSRKR	8	Unmodified	_NKGDSRKR_					0	0	0			REV__ENSG00000183323|ENST00000396496|CCDC125	REV__ENSG00000183323|ENST00000396496|CCDC125	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.2626647949219	2	480.770314	959.526075	0.01226	5.8943E-06	1.8828	0.00090521	1.8951	0.0009111	480.77102536152603	47.353	1.1113	44.281	44.014	45.125	-3.0724					42	21	3	0	0	0	0.028476	1	2512	2512		68.485	32.038	1	356120	+		40013	22356	33018	33042	43408	43408					0.04469339592048982
NKGDSRKR	8	Unmodified	_NKGDSRKR_					0	0	0			REV__ENSG00000183323|ENST00000396496|CCDC125	REV__ENSG00000183323|ENST00000396496|CCDC125	MULTI-MATCH	OvCa9_classI_Rep2	2		2	480.770314	959.526075	-0.75023	-0.00036069	2.6138	0.0012567	1.8636	0.00089597	480.7714432306721	47.089	1.0888	44.379	44.192	45.281	-2.7097	0.049296	0.00023402	NaN	68.485	30	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69524	+		40014	22356	33018	33042							0.04469339592048982
NKGEAIKLCP	10	Unmodified	_NKGEAIKLCP_					0	0	0		tr|A0A7D6ZWS5|A0A7D6ZWS5_9CLOTElectrontransferflavoproteinsubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_19085PE=3SV=1	tr|A0A7D6ZWS5|A0A7D6ZWS5_9CLOTElectrontransferflavoproteinsubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_19085PE=3SV=1	tr|A0A7D6ZWS5|A0A7D6ZWS5_9CLOTElectrontransferflavoproteinsubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_19085PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.258544921875	2	536.794609	1071.57467	-2.3671	-0.0012707	-0.81223	-0.000436	-3.1793	-0.0017067	537.2961968387996	85.244	0.93841	83.753	83.456	84.394	-1.4906					29	18	2	0	0	0	0.026714	1	7441	7441		35.152	7.2698	1	43520			40015	35852	33019	33043	43409	43409					0.041740721168935124
NKGIKASRR	9	Unmodified	_NKGIKASRR_					0	0	0			REV__ENSG00000163637|ENST00000638394|PRICKLE2	REV__ENSG00000163637|ENST00000638394|PRICKLE2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7698364257812	2	515.317432	1028.62031	0.13507	6.9604E-05	-1.1952	-0.0006159	-1.0601	-0.0005463	515.3164067605119	38.487	0.44518	35.561	35.305	35.75	-2.9264					10	8	2	0	0	0	0.027462	1	1510	1510		21.96	0	1	9270.1	+		40016	20866	33020	33044	43410	43410					0.10714478414161022
NKGIKIYSL	9	Unmodified	_NKGIKIYSL_					0	0	0			REV__ENSG00000171659|ENST00000378142|GPR34	REV__ENSG00000171659|ENST00000378142|GPR34	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.762451171875	2	518.313492	1034.61243	-0.19569	-0.00010143	2.6387	0.0013677	2.443	0.0012662	518.3145035375264	101.62	0.59273	101.62	101.32	101.91	0					17	13	2	0	0	0	0.027462	1	11299	11299		18.262	5.3029	1	294900	+		40017	21635	33021	33045	43411	43411					0.09650906374031365
NKGITDAALL	10	Unmodified	_NKGITDAALL_					0	0	0			REV__tr|A0A553SHV2|A0A553SHV2_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_13655PE=3SV=1	REV__tr|A0A553SHV2|A0A553SHV2_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_13655PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.29522705078125	2	508.292756	1014.57096	0.21698	0.00011029	2.0236	0.0010286	2.2406	0.0011389	508.29366840918976	114.4	0.68184	114.4	114.01	114.7	0					28	14	3	0	0	0	0.50999	1	13068	13068		52.937	5.2794	1	461620	+		40018	29843	33022	33046	43412	43412					0.06425725614712974
NKGITDAALL	10	Unmodified	_NKGITDAALL_					0	0	0			REV__tr|A0A553SHV2|A0A553SHV2_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_13655PE=3SV=1	REV__tr|A0A553SHV2|A0A553SHV2_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_13655PE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	508.292756	1014.57096	0.21698	0.00011029	2.0236	0.0010286	2.2406	0.0011389	508.29366840918976	114.4	0.68184	114.4	114.01	114.7	0	0	0	NaN	52.937	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	461620	+		40019	29843	33022	33046							0.06425725614712974
NKGKKAKR	8	Unmodified	_NKGKKAKR_					0	0	0			REV__ENSG00000171234|ENST00000305231|UGT2B7	REV__ENSG00000171234|ENST00000305231|UGT2B7	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.2874755859375	2	465.303793	928.593033	1.1425	0.00053161	-1.7576	-0.00081783	-0.61511	-0.00028621	465.3029969295341	123.68	0.40585	123.68	123.51	123.92	0					11	8	2	0	0	0	0.028476	1	14257	14257		12.959	0	1	153890	+		40020	21604	33023	33047	43413	43413					0.125879948737861
NKGKLLVEIPT	11	Unmodified	_NKGKLLVEIPT_					0	0	0		tr|A0A7D6ZUY1|A0A7D6ZUY1_9CLOTPLP-dependentaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12165PE=3SV=1	tr|A0A7D6ZUY1|A0A7D6ZUY1_9CLOTPLP-dependentaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12165PE=3SV=1	tr|A0A7D6ZUY1|A0A7D6ZUY1_9CLOTPLP-dependentaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12165PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3707275390625	2	606.371538	1210.72852	-2.264	-0.0013728	-1.0272	-0.00062285	-3.2912	-0.0019957	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.71789	1	12577	12577		23.523	1.8369	1	205770			40021	35785	33024	33048	43414	43414					0.13158805154080255
NKGKQRLR	8	Unmodified	_NKGKQRLR_					0	0	0			REV__IQCB1|p.E529Sfs*18|1|0.05|ENSG00000173226|chr3:121770557-121770558|-/AGCCTCCTGAGTAGCTGGGA|frameshift_variant	REV__IQCB1|p.E529Sfs*18|1|0.05|ENSG00000173226|chr3:121770557-121770558|-/AGCCTCCTGAGTAGCTGGGA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.8338623046875	2	500.312149	998.609745	0.087016	4.3535E-05	2.0719	0.0010366	2.1589	0.0010801	500.3131474811659	57.516	0.55358	57.516	57.264	57.818	0					23	12	3	0	0	0	0.028476	1	4874	4874		38.806	0	1	436940	+		40022	28311	33025	33049	43415	43415					0.11038495759737543
NKGLVRKP	8	Unmodified	_NKGLVRKP_					0	0	0		ENSG00000163705|ENST00000450660|FANCD2OS	ENSG00000163705|ENST00000450660|FANCD2OS	ENSG00000163705|ENST00000450660|FANCD2OS	MULTI-SECPEP	OvCa9_classI_Rep4_	4	457.272216796875	2	456.292894	910.571235	-0.87896	-0.00040106	0.74895	0.00034174	-0.13001	-5.9324E-05	456.29301173148167	71.921	1.2627	68.464	68.074	69.337	-3.4563					47	25	3	0	0	0	0.028476	1	5547	5547		47.916	14.4	1	100880			40023	6351	33026	33050	43416	43416					0.11237190125223151
NKGPSRIK	8	Unmodified	_NKGPSRIK_					0	0	0			REV__ENSG00000083635|ENST00000379161|NUFIP1	REV__ENSG00000083635|ENST00000379161|NUFIP1	MULTI-MSMS	OvCa9_classI_Rep3	3	450.2740783691406	2	450.274701	898.534849	-3.7498	-0.0016884	3.5683	0.0016067	-0.18149	-8.172E-05	450.27623858459356	147.83	1.7988	146.88	146.5	148.3	-0.95119					100	35	5	0	0	0	0.74229	1	12450	12450		30.504	3.7075	1	751980	+		40024	17106	33027	33051	43417	43417					0.08152313228515595
NKGYGKGF	8	Unmodified	_NKGYGKGF_					0	0	0			REV__ENSG00000070915|ENST00000563236|SLC12A3	REV__ENSG00000070915|ENST00000563236|SLC12A3	MULTI-SECPEP	OvCa99_classI_Rep5	1	435.2403259277344	2	435.727052	869.439552	0.30868	0.0001345	-0.11552	-5.0335E-05	0.19316	8.4163E-05	435.72689185004634	49.141	1.0054	49.141	48.851	49.856	0					34	22	3	0	0	0	0.028476	1	3690	3690		31.955	24.762	1	447720	+		40025	16893	33028	33052	43418	43418					-0.00039039962518927496
NKHEYNEDK	9	Unmodified	_NKHEYNEDK_					0	0	0			REV__tr|A0A7D6VSV8|A0A7D6VSV8_9CLOTAdenylyl-sulfatereductasesubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_00540PE=4SV=1	REV__tr|A0A7D6VSV8|A0A7D6VSV8_9CLOTAdenylyl-sulfatereductasesubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_00540PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.3096923828125	2	588.767634	1175.52072	-0.7618	-0.00044853	0.35308	0.00020788	-0.40873	-0.00024065	588.7680944113008	59.334	0.26589	59.334	59.228	59.494	0					9	6	2	0	0	0	0.027441	1	5116	5116		49.442	0	1	432720	+		40026	31545	33029	33053	43419	43419					-0.06002428781107483
NKHFIKMIL	9	Unmodified	_NKHFIKMIL_					0	0	0		ENST00000560750.1_1_15:44827607-44828268:-|nuORF	ENST00000560750.1_1_15:44827607-44828268:-|nuORF	ENST00000560750.1_1_15:44827607-44828268:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	572.3177490234375	2	572.338987	1142.66342	-0.78027	-0.00044658	2.3707	0.0013568	1.5904	0.00091024	572.3402833916392	81.016	1.0171	78.693	78.44	79.457	-2.3226					59	19	4	0	0	0	0.027456	1	4537	4537		38.806	0	1	267570			40027	13741	33030	33054	43420	43420					0.09779532147263126
NKHFRGAR	8	Unmodified	_NKHFRGAR_					0	0	0			REV__nc|ENSG00000009844|Q9NP79-2|VTA1	REV__nc|ENSG00000009844|Q9NP79-2|VTA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.2940673828125	2	493.275567	984.53658	-0.43473	-0.00021444	1.8365	0.00090589	1.4018	0.00069145	493.27599827665335	61.223	0.43127	61.223	60.984	61.416	0					12	9	2	0	0	0	0.028476	1	5357	5357		12.959	0	1	132170	+		40028	16470	33031	33055	43421	43421					0.04369367037133998
NKHFRGAR	8	Unmodified	_NKHFRGAR_					0	0	0			REV__nc|ENSG00000009844|Q9NP79-2|VTA1	REV__nc|ENSG00000009844|Q9NP79-2|VTA1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	493.275567	984.53658	0.5696	0.00028097	-1.4289	-0.00070486	-0.85933	-0.00042389	493.2751476238992	64.649	0.38857	61.163	60.969	61.358	-3.4854	-0.029652	-0.0015288	NaN	25.45	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42070	+		40029	16470	33031	33055							0.04369367037133998
NKHGEQCQED	10	Carbamidomethyl (C)	_NKHGEQC(Carbamidomethyl (C))QED_	NKHGEQC(1)QED		NKHGEQC(46)QED		0	1	0		ENSG00000010327|ENST00000321725|STAB1;STAB1|p.G1393Afs*11|1|0.46|ENSG00000010327|chr3:52516388-52516389|-/C|frameshift_variant	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MSMS	OvCa99_classI_Rep5	1	622.748046875	2	622.751658	1243.48876	1.8165	0.0011312	1.1384	0.00070894	2.9549	0.0018402	622.7519914527949	137.61	1.0018	137.61	137.3	138.31	0					46	21	4	0	0	0	0.5635	1	16053	16053		46.457	7.7032	1	225240			40030	945	33032	33056	43422	43422	6				-0.12324164526557979
NKHIKTINL	9	Unmodified	_NKHIKTINL_					0	0	0			REV__ENSG00000136628|ENST00000366923|EPRS1	REV__ENSG00000136628|ENST00000366923|EPRS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.2998046875	2	540.82984	1079.64513	2.2839	0.0012352	4.2951	0.0023229	6.5791	0.0035581	540.8319659264882	95.013	1.0532	95.013	94.732	95.785	0					46	24	2	0	0	0	0.027462	1	10463	10463		26.693	0	1	1340400	+		40031	19395	33033	33057	43423	43423					0.10849113496897189
NKHKKITIA	9	Unmodified	_NKHKKITIA_					0	0	0			REV__ENST00000307834.9_1_2:192550851-192550968:+|nuORF	REV__ENST00000307834.9_1_2:192550851-192550968:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	526.8340454101562	2	526.832383	1051.65021	-0.49163	-0.00025901	2.7129	0.0014293	2.2213	0.0011703	526.8320416625822	69.753	1.7679	67.183	66.815	68.583	-2.5707					57	34	3	0	0	0	0.40667	1	5569	5569		51.335	7.2187	1	983010	+		40032	24313	33034	33058	43424	43424					0.12645417359499334
NKHMELIQN	9	Unmodified	_NKHMELIQN_					0	0	0			REV__tr|A0A7D7A343|A0A7D7A343_9CLOTPolysaccharidedeacetylasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20520PE=3SV=1	REV__tr|A0A7D7A343|A0A7D7A343_9CLOTPolysaccharidedeacetylasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20520PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.3389892578125	2	563.787315	1125.56008	2.7767	0.0015655	2.8395	0.0016009	5.6162	0.0031663	563.7889408059282	88.916	0.48201	88.916	88.637	89.119	0					28	11	3	0	0	0	0.027462	1	9443	9443		26.693	10.22	1	949470	+		40033	32568	33035	33059	43425	43425					0.0023199996878702223
NKHSPRPEK	9	Unmodified	_NKHSPRPEK_					0	0	0		ENSG00000147488|ENST00000689386|ST18	ENSG00000147488|ENST00000689386|ST18	ENSG00000147488|ENST00000689386|ST18	MULTI-MSMS	OvCa99_classI_Rep5	1	546.8003540039062	2	546.799072	1091.58359	1.9521	0.0010674	0.90522	0.00049498	2.8573	0.0015624	546.7993775629586	100.01	0.66814	100.01	99.612	100.28	0					31	15	3	0	0	0	0.53483	1	11090	11090		39.253	5.7372	1	1035900			40034	5361	33036	33060	43426	43426					0.0414618179761419
NKIAWKAL	8	Unmodified	_NKIAWKAL_					0	0	0			REV__tr|A0A553SMP3|A0A553SMP3_NIACIAmidaseOS=NialliacirculansOX=1397GN=CEQ21_22825PE=4SV=1	REV__tr|A0A553SMP3|A0A553SMP3_NIACIAmidaseOS=NialliacirculansOX=1397GN=CEQ21_22825PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	473.2835998535156	2	472.28982	942.565087	-0.62555	-0.00029544	2.9008	0.00137	2.2753	0.0010746	472.2906145486601	136.82	2.1489	135.73	135.07	137.22	-1.0858					66	43	3	0	0	0	0.028476	1	11088	11088		25.45	6.0902	1	26060	+		40035	30355	33037	33061	43427	43427					0.09150671893701201
NKICGVITTTL	11	Unmodified	_NKICGVITTTL_					0	0	0			REV__nc|ENSG00000116704|Q9NTN3-2|SLC35D1	REV__nc|ENSG00000116704|Q9NTN3-2|SLC35D1	MULTI-MSMS	OvCa99_classI_Rep5	1	582.3412475585938	2	581.828649	1161.64274	1.3042	0.00075883	0.70853	0.00041224	2.0127	0.0011711	582.3303584787623	125.13	0.55145	125.13	124.98	125.53	0					22	14	2	0	0	0	0.61983	1	14459	14459		42.864	5.0528	1	133660	+		40036	18314	33038	33062	43428	43428					0.06838896976887554
NKIFTLLED	9	Unmodified	_NKIFTLLED_					0	0	0		tr|A0A553SST3|A0A553SST3_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03620PE=4SV=1	tr|A0A553SST3|A0A553SST3_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03620PE=4SV=1	tr|A0A553SST3|A0A553SST3_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03620PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.31591796875	2	546.800414	1091.58628	1.7693	0.00096745	-1.0773	-0.00058906	0.692	0.00037839	546.8002668240439	87.189	0.66184	87.189	86.844	87.505	0					26	14	2	0	0	0	0.027426	1	9252	9252		63.306	2.3343	1	539070			40037	34414	33039	33063	43429	43429					0.04414592411922058
NKIHVLKLD	9	Unmodified	_NKIHVLKLD_					0	0	0		MACF1-CMTM4|1|fusion;MACF1-CMTM4|2|fusion;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1	MACF1-CMTM4|1|fusion;nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3341064453125	2	540.332216	1078.64988	0.71528	0.00038649	2.8501	0.00154	3.5654	0.0019265	540.3335173912039	131.44	2.5576	130.32	129.91	132.47	-1.1249					119	51	4	0	0	0	0.51865	1	10554	10554		40.778	1.972	1	239410			40038	15005;14812	33040	33064	43430	43430					0.1136999763964468
NKIIKVPKA	9	Unmodified	_NKIIKVPKA_					0	0	0			REV__tr|A0A553SSP3|A0A553SSP3_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_03305PE=4SV=1	REV__tr|A0A553SSP3|A0A553SSP3_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_03305PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.8121337890625	2	505.839677	1009.6648	0.28493	0.00014413	1.2744	0.00064466	1.5594	0.00078879	505.8401554302362	89.549	0.79843	86.974	86.752	87.551	-2.575					20	15	2	0	0	0	0.027462	1	7716	7716		30.504	0	1	45327	+		40039	30858	33041	33065	43431	43431					0.16035489507646616
NKIKKAKP	8	Unmodified	_NKIKKAKP_					0	0	0			REV__SETD5|p.T185A|2|0.23|ENSG00000168137|chr3:9435892-9435892|A/G|missense_variant	REV__SETD5|p.T185A|2|0.23|ENSG00000168137|chr3:9435892-9435892|A/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.22564697265625	2	463.810919	925.607286	0.087879	4.0759E-05	-0.011459	-5.3148E-06	0.07642	3.5445E-05	463.8107347715877	58.343	0.58112	58.343	58.153	58.734	0					25	13	3	0	0	0	0.028476	1	5006	5006		25.45	7.1258	1	1043900	+		40040	29355	33042	33066	43432	43432					0.1415064730207405
NKIKKVALR	9	Unmodified	_NKIKKVALR_					0	0	0			REV__ENST00000266517.8_3_12:22843253-22843394:+|nuORF	REV__ENST00000266517.8_3_12:22843253-22843394:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	535.327392578125	2	535.36385	1068.71315	-1.3174	-0.00070527	1.0205	0.00054637	-0.29682	-0.00015891	535.3642133343915	58.562	0.86194	55.782	55.537	56.399	-2.7801					35	16	3	0	0	0	0.027462	1	4284	4284		23.042	0	1	52452	+		40041	24042	33043	33067	43433	43433					0.1815398314754475
NKIKPADVE	9	Unmodified	_NKIKPADVE_					0	0	0		tr|A0A7D6W066|A0A7D6W066_9CLOT1-acyl-sn-glycerol-3-phosphateacyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22695PE=3SV=1	tr|A0A7D6W066|A0A7D6W066_9CLOT1-acyl-sn-glycerol-3-phosphateacyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22695PE=3SV=1	tr|A0A7D6W066|A0A7D6W066_9CLOT1-acyl-sn-glycerol-3-phosphateacyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22695PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.28302001953125	2	507.284931	1012.55531	0.0066851	3.3913E-06	-2.7534	-0.0013968	-2.7467	-0.0013934	507.283412188162	31.081	1.5294	28.371	28.15	29.679	-2.7097					66	30	3	0	0	0	0.63422	1	939	939		27.882	2.3082	1	500220			40042	35373	33044	33068	43434	43434					0.04953439097653245
NKIKPPII	8	Unmodified	_NKIKPPII_					0	0	0		ENST00000414066.1_1_10:38107898-38108846:-|nuORF	ENST00000414066.1_1_10:38107898-38108846:-|nuORF	ENST00000414066.1_1_10:38107898-38108846:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	461.9212951660156	2	461.807845	921.601138	-0.32467	-0.00014994	-0.080353	-3.7107E-05	-0.40502	-0.00018704	461.807635826903	61.196	1.3485	57.766	57.444	58.793	-3.43					62	27	4	0	0	0	0.028476	1	4155	4155		26.796	0	1	320780			40043	11571	33045	33069	43435	43435					0.13720129070554776
NKILELTY	8	Unmodified	_NKILELTY_					0	0	0			REV__tr|A0A7D6VRQ5|A0A7D6VRQ5_9CLOTTypeVIIsecretionproteinEssCOS=ClostridiumintestinaleOX=36845GN=essCPE=4SV=1	REV__tr|A0A7D6VRQ5|A0A7D6VRQ5_9CLOTTypeVIIsecretionproteinEssCOS=ClostridiumintestinaleOX=36845GN=essCPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	497.295654296875	2	497.2844	992.554247	-1.0427	-0.00051853	-0.6457	-0.0003211	-1.6884	-0.00083963	497.28348359528115	77.507	1.5825	75.155	74.366	75.949	-2.3527					46	30	3	0	0	0	0.028476	1	3968	3968		12.207	0	1	42262	+		40044	31435	33046	33070	43436	43436					0.057672247287428036
NKILELTY	8	Unmodified	_NKILELTY_					0	0	0			REV__tr|A0A7D6VRQ5|A0A7D6VRQ5_9CLOTTypeVIIsecretionproteinEssCOS=ClostridiumintestinaleOX=36845GN=essCPE=4SV=1	REV__tr|A0A7D6VRQ5|A0A7D6VRQ5_9CLOTTypeVIIsecretionproteinEssCOS=ClostridiumintestinaleOX=36845GN=essCPE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	497.2844	992.554247	2.4375	0.0012121	-2.2716	-0.0011296	0.16583	8.2466E-05	497.28346755998757	75.165	0.9204	75.165	74.718	75.639	0	0.0051527	-0.00027468	NaN	12.207	44	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1158000	+		40045	31435	33046	33070							0.057672247287428036
NKILIKGR	8	Unmodified	_NKILIKGR_					0	0	0			REV__PLCB2|p.R1022Nfs*56|1|0.09|ENSG00000137841|chr15:40290811-40290812|-/ATTT|frameshift_variant	REV__PLCB2|p.R1022Nfs*56|1|0.09|ENSG00000137841|chr15:40290811-40290812|-/ATTT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	470.7958984375	2	471.316369	940.618185	0.11817	5.5695E-05	-0.49865	-0.00023502	-0.38048	-0.00017933	471.31601541934003	79	0.98138	77.261	76.999	77.981	-1.7398					27	18	2	0	0	0	0.028476	1	6697	6697		30.504	0	1	35722	+		40046	19487	33047	33071	43437	43437					0.14550049676370236
NKILPILVT	9	Unmodified	_NKILPILVT_					0	0	0			REV__tr|A0A7D6VTP4|A0A7D6VTP4_9CLOTPhosphatetransportsystempermeaseproteinOS=ClostridiumintestinaleOX=36845GN=pstCPE=3SV=1	REV__tr|A0A7D6VTP4|A0A7D6VTP4_9CLOTPhosphatetransportsystempermeaseproteinOS=ClostridiumintestinaleOX=36845GN=pstCPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.8096618652344	2	505.83406	1009.65357	0.96983	0.00049057	-1.7418	-0.00088107	-0.77199	-0.0003905	505.83311958204337	87.56	2.5688	86.129	85.438	88.007	-1.4311					98	51	3	0	0	0	0.027426	1	7797	7797		44.117	12.587	1	208830	+		40047	31620	33048	33072	43438	43438					0.14912667413523195
NKILPILVT	9	Unmodified	_NKILPILVT_					0	0	0			REV__tr|A0A7D6VTP4|A0A7D6VTP4_9CLOTPhosphatetransportsystempermeaseproteinOS=ClostridiumintestinaleOX=36845GN=pstCPE=3SV=1	REV__tr|A0A7D6VTP4|A0A7D6VTP4_9CLOTPhosphatetransportsystempermeaseproteinOS=ClostridiumintestinaleOX=36845GN=pstCPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.8121643066406	2	505.83406	1009.65357	-1.0072	-0.00050946	0.49536	0.00025057	-0.5118	-0.00025889	505.8341246057179	89.023	2.1477	86.42	85.832	87.979	-2.6027					77	42	3	0	0	0	0.027448	1	7764	7764		44.117	14.967	1	218100	+		40048	31620	33048	33072	43439	43439					0.14912667413523195
NKINDKEII	9	Unmodified	_NKINDKEII_					0	0	0			REV__tr|A0A7D6ZW15|A0A7D6ZW15_9CLOTAminotransferaseclassIVOS=ClostridiumintestinaleOX=36845GN=HZF06_06290PE=3SV=1	REV__tr|A0A7D6ZW15|A0A7D6ZW15_9CLOTAminotransferaseclassIVOS=ClostridiumintestinaleOX=36845GN=HZF06_06290PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	543.812744140625	2	543.811313	1085.60807	2.9704	0.0016153	-0.61735	-0.00033572	2.353	0.0012796	543.8108209278663	89.712	0.87531	89.712	89.394	90.269	0					42	20	3	0	0	0	0.064985	1	9605	9605		110.12	3.1124	1	2575500	+		40049	32270	33049	33073	43440	43440					0.06869397160471635
NKINDKEII	9	Unmodified	_NKINDKEII_					0	0	0			REV__tr|A0A7D6ZW15|A0A7D6ZW15_9CLOTAminotransferaseclassIVOS=ClostridiumintestinaleOX=36845GN=HZF06_06290PE=3SV=1	REV__tr|A0A7D6ZW15|A0A7D6ZW15_9CLOTAminotransferaseclassIVOS=ClostridiumintestinaleOX=36845GN=HZF06_06290PE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	543.811313	1085.60807	2.9704	0.0016153	-0.61735	-0.00033572	2.353	0.0012796	543.8108209278663	89.712	0.87531	89.712	89.394	90.269	0	0	0	NaN	110.12	42	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2575500	+		40050	32270	33049	33073							0.06869397160471635
NKIPEGAPF	9	Unmodified	_NKIPEGAPF_					0	0	0		PDE11A|p.D619Sfs*16|1|0.06|ENSG00000128655|chr2:177728087-177728106|GTGATCATGGCATCAACGTC/-|frameshift_variant;nc|ENSG00000128655|Q9HCR9-2|PDE11A;ENSG00000128655|ENST00000286063|PDE11A;PDE11A|p.A341V|1|0.26|ENSG00000128655|chr2:178014351-178014351|G/A|missense_variant	PDE11A|p.D619Sfs*16|1|0.06|ENSG00000128655|chr2:177728087-177728106|GTGATCATGGCATCAACGTC/-|frameshift_variant	PDE11A|p.D619Sfs*16|1|0.06|ENSG00000128655|chr2:177728087-177728106|GTGATCATGGCATCAACGTC/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.2921142578125	2	486.761092	971.507631	-0.87622	-0.00042651	1.1239	0.00054708	0.2477	0.00012057	486.760997862924	100.87	0.54797	98.601	98.29	98.838	-2.2665					14	10	2	0	0	0	0.027456	1	9004	9004		47.916	0	1	18240			40051	3899	33050	33074	43441	43441					0.020737848974818007
NKIPEGAPF	9	Unmodified	_NKIPEGAPF_					0	0	0		PDE11A|p.D619Sfs*16|1|0.06|ENSG00000128655|chr2:177728087-177728106|GTGATCATGGCATCAACGTC/-|frameshift_variant;nc|ENSG00000128655|Q9HCR9-2|PDE11A;ENSG00000128655|ENST00000286063|PDE11A;PDE11A|p.A341V|1|0.26|ENSG00000128655|chr2:178014351-178014351|G/A|missense_variant	PDE11A|p.D619Sfs*16|1|0.06|ENSG00000128655|chr2:177728087-177728106|GTGATCATGGCATCAACGTC/-|frameshift_variant	PDE11A|p.D619Sfs*16|1|0.06|ENSG00000128655|chr2:177728087-177728106|GTGATCATGGCATCAACGTC/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	486.761092	971.507631	-0.56249	-0.0002738	0.79137	0.00038521	0.22888	0.00011141	486.76122092554687	99.412	0.99279	98.582	98.268	99.261	-0.83051	-0.0095835	-0.00010827	NaN	47.916	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9755.7			40052	3899	33050	33074							0.020737848974818007
NKIPINAVL	9	Unmodified	_NKIPINAVL_					0	0	0			REV__tr|A0A7D6ZWL7|A0A7D6ZWL7_9CLOTCelldivisiontopologicalspecificityfactorOS=ClostridiumintestinaleOX=36845GN=minEPE=3SV=1	REV__tr|A0A7D6ZWL7|A0A7D6ZWL7_9CLOTCelldivisiontopologicalspecificityfactorOS=ClostridiumintestinaleOX=36845GN=minEPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.7385559082031	2	491.30821	980.601866	0.2276	0.00011182	-0.38195	-0.00018765	-0.15435	-7.5831E-05	491.30747334416276	78.812	1.1312	76.06	75.807	76.938	-2.7514					39	23	3	0	0	0	0.027456	1	6381	6381		38.806	0	1	193150	+		40053	32294	33051	33075	43442	43442					0.11078923719594513
NKIPSAPRK	9	Unmodified	_NKIPSAPRK_					0	0	0			REV__tr|A0A7D6ZJ76|A0A7D6ZJ76_9CLOTTyrosine-typerecombinase/integraseOS=ClostridiumintestinaleOX=36845GN=HZF06_10145PE=4SV=1	REV__tr|A0A7D6ZJ76|A0A7D6ZJ76_9CLOTTyrosine-typerecombinase/integraseOS=ClostridiumintestinaleOX=36845GN=HZF06_10145PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.8097229003906	2	505.808908	1009.60326	-0.83897	-0.00042436	-0.12157	-6.1492E-05	-0.96054	-0.00048585	505.80875869727646	74.191	1.4813	70.96	70.579	72.061	-3.2308					53	30	2	0	0	0	0.59259	1	5787	5787		32.812	3.6629	1	633360	+		40054	32080	33052	33076	43443	43443					0.09884557808356931
NKIPSLLHP	9	Unmodified	_NKIPSLLHP_					0	0	0		ENST00000590467.5_1_19:44670865-44674197:+|nuORF	ENST00000590467.5_1_19:44670865-44674197:+|nuORF	ENST00000590467.5_1_19:44670865-44674197:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	509.80279541015625	2	509.805834	1017.59712	-0.41042	-0.00020923	-3.6368	-0.0018541	-4.0473	-0.0020633	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.59983	1	13708	13708		31.955	7.7521	1	150140			40055	14106	33053	33077	43444	43444					0.08902039576844345
NKIRCFIME	9	Unmodified	_NKIRCFIME_					0	0	0		ENSG00000158966|ENST00000651257|CACHD1;nc|ENSG00000158966|Q5VU97-2|CACHD1	ENSG00000158966|ENST00000651257|CACHD1	ENSG00000158966|ENST00000651257|CACHD1	MULTI-MSMS	OvCa99_classI_Rep5	1	577.3023071289062	2	577.296462	1152.57837	0.67429	0.00038927	4.3911	0.002535	5.0654	0.0029242	577.2985886158132	153.8	3.8009	153.8	153.4	157.2	0					185	75	4	0	0	0	0.38529	1	18257	18257		53.351	2.1588	1	5848200			40056	5981	33054	33078	43445	43445					0.008184186191101617
NKIRVTLQH	9	Unmodified	_NKIRVTLQH_					0	0	0			REV__ENSG00000116580|ENST00000368331|GON4L	REV__ENSG00000116580|ENST00000368331|GON4L	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.3240356445312	2	554.832914	1107.65128	0.6184	0.00034311	-1.5919	-0.00088325	-0.97352	-0.00054014	554.8320146209263	45.676	0.70201	45.676	45.54	46.242	0					24	10	3	0	0	0	0.027433	1	3166	3166		71.296	12.514	1	1134900	+		40057	15655	33055	33079	43446	43446					0.10175631728407097
NKISPFPVVK	10	Unmodified	_NKISPFPVVK_					0	0	0			REV__nc|ENSG00000144730|Q8NFM7-2|IL17RD	REV__nc|ENSG00000144730|Q8NFM7-2|IL17RD	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.8041381835938	2	564.842416	1127.67028	0.60532	0.00034191	-0.41335	-0.00023347	0.19197	0.00010843	564.8408440973182	94.939	0.4014	92.47	92.16	92.561	-2.4685					10	7	2	0	0	0	0.026688	1	8319	8319		40.778	19.076	1	14292	+		40058	19930	33056	33080	43447	43447					0.11155168299455909
NKITIKKAE	9	Unmodified	_NKITIKKAE_					0	0	0			REV__ENSG00000134440|ENST00000256854|NARS1	REV__ENSG00000134440|ENST00000256854|NARS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.2810668945312	2	522.824224	1043.63389	2.0698	0.0010821	3.0369	0.0015878	5.1067	0.0026699	522.8256574102676	91.646	0.37711	91.646	91.502	91.879	0					13	8	2	0	0	0	0.027462	1	9862	9862		27.882	0	1	506820	+		40059	19202	33057	33081	43448	43448					0.1138229140274234
NKIVSHLLV	9	Unmodified	_NKIVSHLLV_					0	0	0		nc|ENSG00000196482|P62508-4|ESRRG;nc|ENSG00000196482|P62508-2|ESRRG;nc|ENSG00000196482|P62508-3|ESRRG;ENSG00000196482|ENST00000408911|ESRRG;nc|ENSG00000196482|P62508-5|ESRRG	nc|ENSG00000196482|P62508-4|ESRRG	nc|ENSG00000196482|P62508-4|ESRRG	MULTI-SECPEP	OvCa9_classI_Rep3	3	512.7865600585938	2	511.821484	1021.62842	-0.017018	-8.7104E-06	-0.65107	-0.00033323	-0.66809	-0.00034194	511.8211400338122	109.01	1.9176	107.82	107.17	109.08	-1.1978					62	36	2	0	0	0	0.027462	1	7808	7808		19.997	4.355	1	133070			40060	8613	33058	33082	43449	43449					0.11846612610941065
NKIVSIATY	9	Unmodified	_NKIVSIATY_					0	0	0			REV__ENSG00000147251|ENST00000276202|DOCK11	REV__ENSG00000147251|ENST00000276202|DOCK11	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.7791442871094	2	504.78985	1007.56515	-5.3969	-0.0027243	-4.1407	-0.0020902	-9.5377	-0.0048145	504.788225572965	160.43	0.53851	160.21	159.95	160.49	-0.22696					13	10	2	0	0	0	0.027462	1	16324	16324		35.618	11.416	1	7983.8	+		40061	20056	33059	33083	43450	43450					0.06166627103027622
NKKALIGVSL	10	Unmodified	_NKKALIGVSL_					0	0	0			REV__ENST00000507897.5_1_6:88187111-88205805:+|nuORF	REV__ENST00000507897.5_1_6:88187111-88205805:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.2713623046875	2	521.834591	1041.65463	-0.57311	-0.00029907	-0.24512	-0.00012791	-0.81823	-0.00042698	521.8344141511723	105.11	0.99891	103.1	102.85	103.85	-2.0161					30	19	2	0	0	0	0.026688	1	9612	9612		40.778	0.20554	1	26563	+		40062	26907	33060	33084	43451	43451					0.13546881782417586
NKKALIGVSL	10	Unmodified	_NKKALIGVSL_					0	0	0			REV__ENST00000507897.5_1_6:88187111-88205805:+|nuORF	REV__ENST00000507897.5_1_6:88187111-88205805:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	521.834591	1041.65463	0.33615	0.00017542	-1.1588	-0.0006047	-0.82263	-0.00042928	521.8340533562374	104.36	0.88234	102.93	102.66	103.54	-1.4347	-0.085738	-0.00058507	NaN	40.778	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32991	+		40063	26907	33060	33084							0.13546881782417586
NKKALLVSI	9	Unmodified	_NKKALLVSI_					0	0	0		tr|A0A553SQU8|A0A553SQU8_NIACIConjugaltransferproteinOS=NialliacirculansOX=1397GN=CEQ21_07300PE=3SV=1	tr|A0A553SQU8|A0A553SQU8_NIACIConjugaltransferproteinOS=NialliacirculansOX=1397GN=CEQ21_07300PE=3SV=1	tr|A0A553SQU8|A0A553SQU8_NIACIConjugaltransferproteinOS=NialliacirculansOX=1397GN=CEQ21_07300PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.7225341796875	2	493.32386	984.633166	-1.0064	-0.00049647	0.26462	0.00013055	-0.74175	-0.00036592	493.3238835927624	49.951	0.74165	49.951	49.723	50.465	0					33	16	3	0	0	0	0.027462	1	3820	3820		17.365	0	1	1084900			40064	34200	33061	33085	43452	43452					0.14023496753691234
NKKAQLEAL	9	Unmodified	_NKKAQLEAL_					0	0	0			REV__ENSG00000131951|ENST00000570145|LRRC9	REV__ENSG00000131951|ENST00000570145|LRRC9	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3230895996094	2	507.800749	1013.58694	2.2537	0.0011444	-0.42669	-0.00021667	1.827	0.00092776	507.80052200060265	82.722	0.64052	82.722	82.394	83.035	0					17	11	2	0	0	0	0.027411	1	8540	8540		54.776	0	1	685680	+		40065	19044	33062	33086	43453	43453					0.08069431851606623
NKKAQLEAL	9	Unmodified	_NKKAQLEAL_					0	0	0			REV__ENSG00000131951|ENST00000570145|LRRC9	REV__ENSG00000131951|ENST00000570145|LRRC9	MULTI-MATCH	OvCa9_classI_Rep2	2		2	507.800749	1013.58694	-1.6084	-0.00081676	1.4921	0.00075769	-0.11631	-5.9063E-05	507.80159285974355	84.634	2.1533	83.088	82.483	84.636	-1.5462	0.07532	0.00052522	NaN	54.776	90	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236220	+		40066	19044	33062	33086							0.08069431851606623
NKKAQLEAL	9	Unmodified	_NKKAQLEAL_					0	0	0			REV__ENSG00000131951|ENST00000570145|LRRC9	REV__ENSG00000131951|ENST00000570145|LRRC9	MULTI-MATCH	OvCa9_classI_Rep3	3		2	507.800749	1013.58694	-1.4562	-0.00073944	1.3825	0.00070204	-0.073666	-3.7408E-05	507.8014883598106	85.367	3.4667	83.147	81.475	84.941	-2.2204	0.1341	0.0004139	NaN	54.776	168	70	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	403370	+		40067	19044	33062	33086							0.08069431851606623
NKKCLTIDF	9	Unmodified	_NKKCLTIDF_					0	0	0			REV__EXT1|p.F106I|1|0.19|ENSG00000182197|chr8:118110731-118110731|A/T|missense_variant	REV__EXT1|p.F106I|1|0.19|ENSG00000182197|chr8:118110731-118110731|A/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.2861328125	2	541.289159	1080.56377	-0.78832	-0.00042671	-2.5898	-0.0014018	-3.3781	-0.0018286	541.287660419002	102.16	1.2086	99.964	99.676	100.88	-2.1994					35	22	2	0	0	0	0.56889	1	9191	9191		35.618	1.4457	1	132560	+		40068	28121	33063	33087	43454	43454					0.026706697426106984
NKKCLTIDF	9	Unmodified	_NKKCLTIDF_					0	0	0			REV__EXT1|p.F106I|1|0.19|ENSG00000182197|chr8:118110731-118110731|A/T|missense_variant	REV__EXT1|p.F106I|1|0.19|ENSG00000182197|chr8:118110731-118110731|A/T|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	541.289159	1080.56377	-1.6408	-0.00088814	-1.8627	-0.0010083	-3.5035	-0.0018964	541.2880882730425	100.71	0.94324	99.875	99.558	100.5	-0.83052	-0.031014	0.00057448	NaN	35.618	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110830	+		40069	28121	33063	33087							0.026706697426106984
NKKCLTIDF	9	Unmodified	_NKKCLTIDF_					0	0	0			REV__EXT1|p.F106I|1|0.19|ENSG00000182197|chr8:118110731-118110731|A/T|missense_variant	REV__EXT1|p.F106I|1|0.19|ENSG00000182197|chr8:118110731-118110731|A/T|missense_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	541.289159	1080.56377	-0.49999	-0.00027064	-2.8538	-0.0015447	-3.3538	-0.0018154	541.287499834815	101.48	1.1536	99.879	99.551	100.7	-1.6053	-0.026877	-0.00049841	NaN	35.618	40	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126940	+		40070	28121	33063	33087							0.026706697426106984
NKKCNWKRKRW	11	Unmodified	_NKKCNWKRKRW_					0	0	0			REV__ENST00000367763.7_2_1:170508440-170511675:+|nuORF	REV__ENST00000367763.7_2_1:170508440-170511675:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.7922973632812	3	516.289378	1545.8463	-0.99107	-0.00051168	2.2617	0.0011677	1.2706	0.000656	516.2905528653346	50.398	0.70727	50.398	50.156	50.863	0					19	15	2	0	0	0	0.02625	1	3822	3822		9.2118	0	1	518010	+		40071	24906	33064	33088	43455	43455					0.09521479261729837
NKKCSSVKY	9	Unmodified	_NKKCSSVKY_					0	0	0		nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	MSMS	OvCa99_classI_Rep5	1	528.78466796875	2	528.778959	1055.54336	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.919	1	56.919	56.419	57.419	0								0	0	0	0.076951	1	4752	4752		74.255	10.048	1				40072	1564	33065	33089	43456	43456					0.017814990828355803
NKKDDGISF	9	Unmodified	_NKKDDGISF_					0	0	0		ENSG00000125977|ENST00000374980|EIF2S2	ENSG00000125977|ENST00000374980|EIF2S2	ENSG00000125977|ENST00000374980|EIF2S2	MULTI-MSMS	OvCa9_classI_Rep2	2	512.2581176757812	2	512.258914	1022.50327	-0.81722	-0.00041863	0.57154	0.00029278	-0.24568	-0.00012585	512.2591178817273	56.188	1.3877	53.384	52.928	54.316	-2.804					83	27	4	0	0	0	0.064985	8	3951	3935;3940;3946;3951;3957;3965;3973;3978		110.12	33.708	1	647890			40073	3758	33066	33090	43457;43458;43459;43460;43461;43462;43463;43464	43460					-0.007077243161006663
NKKDDGISF	9	Unmodified	_NKKDDGISF_					0	0	0		ENSG00000125977|ENST00000374980|EIF2S2	ENSG00000125977|ENST00000374980|EIF2S2	ENSG00000125977|ENST00000374980|EIF2S2	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.26025390625	2	512.258914	1022.50327	0.021344	1.0934E-05	-0.32092	-0.00016439	-0.29958	-0.00015346	512.2586975137657	56.587	1.3182	53.293	52.87	54.188	-3.2944					92	25	5	0	0	0	0.10502	4	3625	3614;3625;3637;3650		95.815	21.56	1	1906500			40074	3758	33066	33090	43465;43466;43467;43468	43466					-0.007077243161006663
NKKDLLPF	8	Unmodified	_NKKDLLPF_					0	0	0		tr|A0A7D7A5M3|A0A7D7A5M3_9CLOTcysteine-S-conjugatebeta-lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07400PE=3SV=1	tr|A0A7D7A5M3|A0A7D7A5M3_9CLOTcysteine-S-conjugatebeta-lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07400PE=3SV=1	tr|A0A7D7A5M3|A0A7D7A5M3_9CLOTcysteine-S-conjugatebeta-lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07400PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.7897033691406	2	487.78711	973.559667	3.5562	0.0017347	2.7211	0.0013273	6.2773	0.003062	487.7882512057077	132.82	4.8462	131.32	130.38	135.22	-1.5015					236	97	4	0	0	0	0.73938	1	12716	12716		31.955	0	1	143240			40075	36174	33067	33091	43469	43469					0.07182948311242399
NKKEILKD	8	Unmodified	_NKKEILKD_					0	0	0		tr|A0A553SFE9|A0A553SFE9_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_08715PE=4SV=1	tr|A0A553SFE9|A0A553SFE9_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_08715PE=4SV=1	tr|A0A553SFE9|A0A553SFE9_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_08715PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3170471191406	2	494.295299	986.576045	1.2903	0.0006378	2.7669	0.0013677	4.0572	0.0020055	494.29650617575794	124.75	1.6628	123.7	123.33	124.99	-1.0519					57	31	3	0	0	0	0.028476	1	9642	9642		49.442	24.922	1	159040			40076	33030	33068	33092	43470	43470					0.08222029477326487
NKKEQTKP	8	Unmodified	_NKKEQTKP_					0	0	0		L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|56|2|sense	L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|56|2|sense	L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|56|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.7276611328125	2	486.777274	971.539994	-0.043726	-2.1285E-05	1.1931	0.00058076	1.1493	0.00055947	486.77692058312186	70.881	0.7075	70.881	70.681	71.389	0					23	17	2	0	0	0	0.028476	1	6821	6821		40.573	0	1	424390			40077	14759	33069	33093	43471	43471					0.05308572300475589
NKKERVKSHL	10	Unmodified	_NKKERVKSHL_					0	0	0			REV__TTF1|p.K280Tfs*10|1|0.09|ENSG00000125482|chr9:132401983-132401984|-/G|frameshift_variant	REV__TTF1|p.K280Tfs*10|1|0.09|ENSG00000125482|chr9:132401983-132401984|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8681030273438	2	619.870028	1237.7255	-2.7857	-0.0017268	1.79	0.0011095	-0.99576	-0.00061724	619.8709153162803	147.4	3.9416	146.45	144.36	148.3	-0.9512					241	78	4	0	0	0	0.69073	1	12381	12381		31.53	0	1	225770	+		40078	18726	33070	33094	43472	43472					0.11614974819940471
NKKERVKSHL	10	Unmodified	_NKKERVKSHL_					0	0	0			REV__TTF1|p.K280Tfs*10|1|0.09|ENSG00000125482|chr9:132401983-132401984|-/G|frameshift_variant	REV__TTF1|p.K280Tfs*10|1|0.09|ENSG00000125482|chr9:132401983-132401984|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.86865234375	2	619.870028	1237.7255	-3.1194	-0.0019336	2.0434	0.0012667	-1.076	-0.00066696	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.62299	1	14976	14976		39.253	7.723	1	806750	+		40079	18726	33070	33094	43473	43473					0.11614974819940471
NKKEYIYLV	9	Unmodified	_NKKEYIYLV_					0	0	0		nc|ENSG00000069869|P46934-3|NEDD4;nc|ENSG00000069869|P46934-2|NEDD4;nc|ENSG00000069869|P46934|NEDD4;ENSG00000069869|ENST00000435532|NEDD4	nc|ENSG00000069869|P46934-3|NEDD4	nc|ENSG00000069869|P46934-3|NEDD4	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.7996826171875	2	585.331882	1168.64921	1.0556	0.0006179	3.6238	0.0021211	4.6794	0.002739	585.3335858121668	143.55	0.44647	143.55	143.37	143.81	0					16	8	3	0	0	0	0.027462	1	16762	16762		27.882	2.3082	1	57474			40080	14888	33071	33095	43474	43474					0.07163158199932695
NKKFFRNRR	9	Unmodified	_NKKFFRNRR_					0	0	0			REV__KCNJ4|p.V22F|1|0.19|ENSG00000168135|chr22:38428069-38428069|C/A|missense_variant	REV__KCNJ4|p.V22F|1|0.19|ENSG00000168135|chr22:38428069-38428069|C/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3670654296875	2	633.37053	1264.72651	-3.894	-0.0024663	1.7423	0.0011036	-2.1516	-0.0013628	633.3715080583703	149.82	2.9263	149.6	148.42	151.35	-0.22696					170	58	4	0	0	0	0.68424	1	15219	15219		21.96	0	1	116220	+		40081	28327	33072	33096	43475	43475					0.10473233979496399
NKKGKKFK	8	Unmodified	_NKKGKKFK_					0	0	0		ENSG00000163171|ENST00000295324|CDC42EP3	ENSG00000163171|ENST00000295324|CDC42EP3	ENSG00000163171|ENST00000295324|CDC42EP3	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.3138427734375	2	489.316369	976.618185	-3.028	-0.0014817	-1.2985	-0.00063537	-4.3265	-0.002117	489.31563425823117	151.49	1.5662	150.06	149.67	151.24	-1.4344					103	34	4	0	0	0	0.74394	1	15013	15013		13.775	0	1	763840			40082	6276	33073	33097	43476	43476					0.12894049676367558
NKKGVTIANT	10	Unmodified	_NKKGVTIANT_					0	0	0		tr|A0A7D6VSX7|A0A7D6VSX7_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06930PE=3SV=1	tr|A0A7D6VSX7|A0A7D6VSX7_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06930PE=3SV=1	tr|A0A7D6VSX7|A0A7D6VSX7_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06930PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3040771484375	2	523.303655	1044.59276	-2.1228	-0.0011108	2.0352	0.001065	-0.087543	-4.5811E-05	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.70152	1	11673	11673		30.318	1.1477	1	183010			40083	35065	33074	33098	43477	43477					0.07224530363282611
NKKHLLLD	8	Unmodified	_NKKHLLLD_					0	0	0			REV__SALL1|p.I1085Tfs*17|1|0.14|ENSG00000103449|chr16:51138968-51138969|-/G|frameshift_variant	REV__SALL1|p.I1085Tfs*17|1|0.14|ENSG00000103449|chr16:51138968-51138969|-/G|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.76507568359375	2	490.798009	979.581465	1.4574	0.00071527	1.4115	0.00069277	2.8689	0.001408	490.798427645064	81.823	0.28294	81.823	81.654	81.937	0					9	6	2	0	0	0	0.028476	1	8429	8429		21.96	0	1	186880	+		40084	17617	33075	33099	43478	43478					0.09085753059810031
NKKHLLLDS	9	Unmodified	_NKKHLLLDS_					0	0	0			REV__SALL1|p.I1085Tfs*17|1|0.14|ENSG00000103449|chr16:51138968-51138969|-/G|frameshift_variant	REV__SALL1|p.I1085Tfs*17|1|0.14|ENSG00000103449|chr16:51138968-51138969|-/G|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.2981567382812	2	534.314023	1066.61349	0.81681	0.00043643	3.6005	0.0019238	4.4173	0.0023602	534.3152159190245	132.1	0.37709	132.1	131.85	132.23	0					10	7	2	0	0	0	0.027462	1	15327	15327		27.882	0	1	27909	+		40085	17617	33076	33100	43479	43479					0.08285120742948493
NKKIPKKLM	9	Unmodified	_NKKIPKKLM_					0	0	0			REV__SLC9A4|p.V464Lfs*42|1|0.13|ENSG00000180251|chr2:102508269-102508270|-/CTACCTGGGATAGACAATCATGG|frameshift_variant	REV__SLC9A4|p.V464Lfs*42|1|0.13|ENSG00000180251|chr2:102508269-102508270|-/CTACCTGGGATAGACAATCATGG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.3123779296875	2	550.354637	1098.69472	0.62179	0.00034221	-2.6194	-0.0014416	-1.9976	-0.0010994	550.3527982948677	105.66	0.48021	105.66	105.44	105.92	0					20	10	3	0	0	0	0.027462	1	11851	11851		38.806	15.764	1	204080	+		40086	29372	33077	33101	43480	43480					0.149321051813331
NKKKHEALAR	10	Unmodified	_NKKKHEALAR_					0	0	0			REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	REV__nc|ENSG00000063761|Q86TW2-3|ADCK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8568115234375	2	597.856921	1193.69929	-0.38237	-0.0002286	-0.55263	-0.00033039	-0.935	-0.00055899	597.8564103488146	145.14	4.0194	143.71	141.51	145.53	-1.4357					229	77	4	0	0	0	0.75313	1	14146	14146		24.519	0.99649	1	217250	+		40087	28721	33078	33102	43481	43481					0.11018705648439209
NKKKKFFL	8	Unmodified	_NKKKKFFL_					0	0	0			REV__ENST00000332995.11_1_6:13287324-13287486:+|nuORF	REV__ENST00000332995.11_1_6:13287324-13287486:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	526.8343505859375	2	526.834394	1051.65424	-0.49163	-0.00025901	-1.1049	-0.00058211	-1.5965	-0.00084112	526.8320416625822	69.753	1.7679	67.183	66.815	68.583	-2.5707					57	34	3	0	0	0	0.65582	1	5556	5556		52.299	0.96372	1	983010	+		40088	24552	33079	33103	43482	43482					0.1304750685324052
NKKKPSMPN	9	Unmodified	_NKKKPSMPN_					0	0	0		ENSG00000005339|ENST00000262367|CREBBP;nc|ENSG00000005339|Q92793-2|CREBBP	ENSG00000005339|ENST00000262367|CREBBP	ENSG00000005339|ENST00000262367|CREBBP	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.279541015625	2	522.286951	1042.55935	-0.17769	-9.2806E-05	3.7184	0.0019421	3.5407	0.0018493	522.2887820310259	74.473	1.2501	72.502	72.114	73.364	-1.9711					35	23	2	0	0	0	0.027462	1	6196	6196		40.778	1.5253	1	150760			40089	851	33080	33104	43483	43483					0.03977205319733912
NKKKQANL	8	Unmodified	_NKKKQANL_					0	0	0			REV__nc|ENSG00000145949|Q86YV6-2|MYLK4	REV__nc|ENSG00000145949|Q86YV6-2|MYLK4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.7735900878906	2	472.287808	942.561064	-0.35562	-0.00016795	4.1551	0.0019624	3.7994	0.0017944	472.2895532214908	72.558	2.6998	69.162	68.135	70.834	-3.3961					106	55	2	0	0	0	0.028476	1	5692	5692		12.207	0	1	125510	+		40090	19991	33081	33105	43484	43484					0.08748582399982752
NKKKQANL	8	Unmodified	_NKKKQANL_					0	0	0			REV__nc|ENSG00000145949|Q86YV6-2|MYLK4	REV__nc|ENSG00000145949|Q86YV6-2|MYLK4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	472.287808	942.561064	0.33026	0.00015598	3.5664	0.0016843	3.8966	0.0018403	472.28928537903084	71.727	2.6497	69.22	67.828	70.478	-2.5072	0.060025	-0.00013977	NaN	17.365	95	50	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44622	+		40091	19991	33081	33105							0.08748582399982752
NKKKQANL	8	Unmodified	_NKKKQANL_					0	0	0			REV__nc|ENSG00000145949|Q86YV6-2|MYLK4	REV__nc|ENSG00000145949|Q86YV6-2|MYLK4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	472.287808	942.561064	0.87078	0.00041126	3.452	0.0016304	4.3228	0.0020416	472.2892982375318	71.7	3.1411	69.097	67.919	71.06	-2.6023	-0.062389	-0.00024775	NaN	17.365	101	62	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46555	+		40092	19991	33081	33105							0.08748582399982752
NKKKRYEEL	9	Unmodified	_NKKKRYEEL_					0	0	0			REV__tr|A0A553SRG3|A0A553SRG3_NIACIPyridoxamine5'-phosphateoxidasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01020PE=4SV=1	REV__tr|A0A553SRG3|A0A553SRG3_NIACIPyridoxamine5'-phosphateoxidasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01020PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	403.2315979003906	3	403.2313	1206.67207	0.81586	0.00032898	-0.65164	-0.00026276	0.16422	6.6219E-05	403.230878889564	35.207	1.0278	35.207	34.818	35.846	0					30	21	3	0	0	0	0.53957	1	1759	1759		45.972	17.891	1	244780	+		40093	30727	33082	33106	43485	43485					0.07700177317428825
NKKKRYEEL	9	Unmodified	_NKKKRYEEL_					0	0	0			REV__tr|A0A553SRG3|A0A553SRG3_NIACIPyridoxamine5'-phosphateoxidasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01020PE=4SV=1	REV__tr|A0A553SRG3|A0A553SRG3_NIACIPyridoxamine5'-phosphateoxidasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01020PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	403.2313	1206.67207	0.81586	0.00032898	-0.65164	-0.00026276	0.16422	6.6219E-05	403.230878889564	35.207	1.0278	35.207	34.818	35.846	0	0	0	NaN	45.972	30	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244780	+		40094	30727	33082	33106							0.07700177317428825
NKKLIGNLY	9	Unmodified	_NKKLIGNLY_					0	0	0		tr|A0A7D6ZV00|A0A7D6ZV00_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12380PE=4SV=1	tr|A0A7D6ZV00|A0A7D6ZV00_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12380PE=4SV=1	tr|A0A7D6ZV00|A0A7D6ZV00_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12380PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8162231445312	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.70177	1	14004	14004		17.365	0.89182	1	166960			40095	35786	33083	33107	43486	43486					0.09498308748334239
NKKLKTWFS	9	Unmodified	_NKKLKTWFS_					0	0	0			REV__ENST00000471566.1_1_1:35496143-35496224:-|nuORF	REV__ENST00000471566.1_1_1:35496143-35496224:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	575.8433837890625	2	576.332216	1150.64988	-3.2023	-0.0018456	1.7736	0.0010222	-1.4287	-0.0008234	576.3330173881008	147.03	0.70039	146.8	146.57	147.27	-0.22696					29	13	3	0	0	0	0.027462	1	14820	14820		29.15	15.374	1	30347	+		40096	26289	33084	33108	43487	43487					0.08057997639639325
NKKLNALHTQV	11	Unmodified	_NKKLNALHTQV_					0	0	0			REV__AluJb_dup120393|chr20:34258955-34259234:+|1.6491951505596367|0.0068482995500215|7.91|394.0|16|2|anti-sense	REV__AluJb_dup120393|chr20:34258955-34259234:+|1.6491951505596367|0.0068482995500215|7.91|394.0|16|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3706665039062	2	633.369861	1264.72517	-4.1446	-0.0026251	2.9938	0.0018962	-1.1508	-0.00072888	633.3716506579397	149.94	3.0119	148.99	147.85	150.86	-0.9512					218	59	5	0	0	0	0.69455	1	12745	12745		31.53	4.8369	1	281260	+		40097	15593	33085	33109	43488	43488					0.1033955510006308
NKKLNALHTQV	11	Unmodified	_NKKLNALHTQV_					0	0	0			REV__AluJb_dup120393|chr20:34258955-34259234:+|1.6491951505596367|0.0068482995500215|7.91|394.0|16|2|anti-sense	REV__AluJb_dup120393|chr20:34258955-34259234:+|1.6491951505596367|0.0068482995500215|7.91|394.0|16|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3695068359375	2	633.369861	1264.72517	-4.8824	-0.0030923	3.9881	0.002526	-0.89421	-0.00056637	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.72324	1	13117	13117		21.686	1.689	1	765700	+		40098	15593	33085	33109	43489	43489					0.1033955510006308
NKKNKRNT	8	Unmodified	_NKKNKRNT_					0	0	0			REV__ENSG00000131503|ENST00000360839|ANKHD1	REV__ENSG00000131503|ENST00000360839|ANKHD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.812255859375	2	501.793789	1001.57303	-0.33338	-0.00016729	3.3793	0.0016957	3.0459	0.0015284	501.7946123858481	68.557	0.46011	68.557	68.398	68.858	0					15	10	2	0	0	0	0.028476	1	6502	6502		30.504	1.3541	1	129020	+		40099	19019	33086	33110	43490	43490					0.07230199143168647
NKKPVAIII	9	Unmodified	_NKKPVAIII_					0	0	0		tr|A0A7D6ZPZ2|A0A7D6ZPZ2_9CLOTDUF348domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22440PE=4SV=1	tr|A0A7D6ZPZ2|A0A7D6ZPZ2_9CLOTDUF348domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22440PE=4SV=1	tr|A0A7D6ZPZ2|A0A7D6ZPZ2_9CLOTDUF348domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22440PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.333984375	2	498.334227	994.653902	-0.32382	-0.00016137	-0.21052	-0.00010491	-0.53434	-0.00026628	498.334091062265	122.71	0.88941	122.49	122.12	123.01	-0.21803					72	17	5	0	0	0	0.38529	1	11937	11937		53.351	3.9099	1	2870900			40100	35695	33087	33111	43491	43491					0.15636087133384535
NKKPVIYLS	9	Unmodified	_NKKPVIYLS_					0	0	0		nc|ENSG00000179889|Q6P996-3|PDXDC1;nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1;nc|ENSG00000179889|Q6P996-2|PDXDC1;ENST00000530079.5_1_16:70030360-70072929:-|nuORF;nc|ENSG00000255185|Q6P474|PDXDC2P;ENST00000531894.5_1_16:70030360-70099817:-|nuORF;ENST00000570001.5_1_16:15069056-15125764:+|nuORF	nc|ENSG00000179889|Q6P996-3|PDXDC1	nc|ENSG00000179889|Q6P996-3|PDXDC1	MULTI-MSMS	OvCa99_classI_Rep5	1	531.3207397460938	2	531.321317	1060.62808	1.0114	0.00053736	-2.7531	-0.0014628	-1.7417	-0.00092541	531.319723609414	154.15	1.3373	154.15	153.78	155.12	0					82	26	4	0	0	0	0.50149	1	18036	18036		42.396	0	1	933000			40101	7846	33088	33112	43492	43492					0.1001919289108173
NKKPWIKLIRK	11	Unmodified	_NKKPWIKLIRK_					0	0	0			REV__tr|A0A553SQK9|A0A553SQK9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_07825PE=4SV=1	REV__tr|A0A553SQK9|A0A553SQK9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_07825PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.23956298828125	3	475.313518	1422.91872	1.8647	0.00088632	-2.2844	-0.0010858	-0.41966	-0.00019947	475.3121911108716	85.293	0.78096	82.647	82.361	83.142	-2.6463					28	15	3	0	0	0	0.026364	1	7161	7161		18.531	4.445	1	72090	+		40102	30640	33089	33113	43493	43493					0.22418136606961525
NKKRKARWLRA	11	Unmodified	_NKKRKARWLRA_					0	0	0		nc|ENSG00000102312|Q9H237-2|PORCN	nc|ENSG00000102312|Q9H237-2|PORCN	nc|ENSG00000102312|Q9H237-2|PORCN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.23956298828125	3	476.300383	1425.87932	1.7637	0.00084007	0.51842	0.00024693	2.2822	0.001087	476.6357419162113	85.402	0.28767	82.755	82.561	82.848	-2.6463					7	5	2	0	0	0	0.026277	1	7161	7161		23.378	0.81632	1	83887			40103	14933	33090	33114	43494	43494					0.18341429376118867
NKKRKLTPD	9	Unmodified	_NKKRKLTPD_					0	0	0		nc|nan|Q8NDD1-7|C1orf131;ENST00000471936.1_1_1:231374554-231376902:-|nuORF;nc|nan|Q8NDD1-6|C1orf131;ENSG00000143633|ENST00000366649|C1orf131;nc|nan|Q8NDD1-5|C1orf131	nc|nan|Q8NDD1-7|C1orf131	nc|nan|Q8NDD1-7|C1orf131	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.8048095703125	2	550.332747	1098.65094	1.635	0.0008998	-3.8581	-0.0021232	-2.2231	-0.0012234	550.3304710876317	102.22	0.38593	102.22	101.87	102.25	0					9	8	2	0	0	0	0.027462	1	11341	11341		27.882	7.8855	1	171910			40104	5082	33091	33115	43495	43495					0.10556212008555121
NKKRKLTPD	9	Unmodified	_NKKRKLTPD_					0	0	0		nc|nan|Q8NDD1-7|C1orf131;ENST00000471936.1_1_1:231374554-231376902:-|nuORF;nc|nan|Q8NDD1-6|C1orf131;ENSG00000143633|ENST00000366649|C1orf131;nc|nan|Q8NDD1-5|C1orf131	nc|nan|Q8NDD1-7|C1orf131	nc|nan|Q8NDD1-7|C1orf131	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	550.332747	1098.65094	-0.46752	-0.00025729	-8.9468	-0.0049237	-9.4143	-0.005181	550.327252289511	104.67	0.62436	102.55	102.32	102.95	-2.1192	0.16509	-0.0032511	NaN	27.882	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21863			40105	5082	33091	33115							0.10556212008555121
NKKSDETII	9	Unmodified	_NKKSDETII_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.8157348632812	2	524.287671	1046.56079	-0.3589	-0.00018817	2.2867	0.0011989	1.9278	0.0010107	524.7906620581871	122.18	1.7497	120.81	120.55	122.3	-1.3666					43	34	2	0	0	0	0.027418	1	11659	11659		71.877	7.6702	1	132720	+		40106	22731	33092	33116	43496	43496					0.03937117889495312
NKKSLITKA	9	Unmodified	_NKKSLITKA_					0	0	0			REV__L1PA6_dup2267|chr6:2299837-2303022:+|1.5111882528479883|0.3006554191737456|2.33|429.0|17|1|sense	REV__L1PA6_dup2267|chr6:2299837-2303022:+|1.5111882528479883|0.3006554191737456|2.33|429.0|17|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.2860107421875	2	501.818941	1001.62333	2.4212	0.001215	3.7366	0.0018751	6.1578	0.0030901	501.82061118305535	80.479	0.51004	80.479	80.192	80.702	0					24	11	3	0	0	0	0.027462	1	8219	8219		26.693	0	1	633270	+		40107	28461	33093	33117	43497	43497					0.12258308748323543
NKKTFDIKI	9	Unmodified	_NKKTFDIKI_					0	0	0		tr|A0A7D6VQP9|A0A7D6VQP9_9CLOTDUF2922domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22050PE=4SV=1	tr|A0A7D6VQP9|A0A7D6VQP9_9CLOTDUF2922domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22050PE=4SV=1	tr|A0A7D6VQP9|A0A7D6VQP9_9CLOTDUF2922domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22050PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	553.8357543945312	2	553.832049	1105.64954	2.2854	0.0012657	-0.89826	-0.00049749	1.3871	0.00076824	553.8314111077262	75.005	1.0452	75.005	74.478	75.523	0					81	25	4	0	0	0	0.19758	1	7484	7484		76.774	2.5191	1	4048400			40108	34863	33094	33118	43498	43498					0.10094577919790026
NKKTSLIKT	9	Unmodified	_NKKTSLIKT_					0	0	0			REV__ENSG00000152217|ENST00000649279|SETBP1	REV__ENSG00000152217|ENST00000649279|SETBP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.2779541015625	2	516.824224	1031.63389	0.94475	0.00048827	4.0543	0.0020954	4.9991	0.0025836	516.8262488701546	105.77	0.43835	105.77	105.62	106.05	0					14	9	2	0	0	0	0.027455	1	11923	11923		26.693	0	1	147120	+		40109	20274	33095	33119	43499	43499					0.1193429140275839
NKKVFKEA	8	Unmodified	_NKKVFKEA_					0	0	0		nc|ENSG00000007402|Q9NY47-4|CACNA2D2;ENSG00000007402|ENST00000424201|CACNA2D2;nc|ENSG00000007402|Q9NY47-3|CACNA2D2;nc|ENSG00000007402|Q9NY47|CACNA2D2;nc|ENSG00000007402|Q9NY47-5|CACNA2D2;chr3:50364976-50365075|350|17.85|0.52|5.09|-|ENST00000423994|CACNA2D2,CACNA2D2	nc|ENSG00000007402|Q9NY47-4|CACNA2D2	nc|ENSG00000007402|Q9NY47-4|CACNA2D2	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.8202209472656	2	482.284734	962.554916	2.3938	0.0011545	1.1843	0.00057119	3.5781	0.0017257	482.28493930263164	94.951	0.81124	94.951	94.517	95.328	0					30	18	2	0	0	0	0.028476	1	10320	10320		37.159	0	1	373190			40110	487	33096	33120	43500	43500					0.07214064168465484
NKKVIFCVIN	10	Unmodified	_NKKVIFCVIN_					0	0	0		tr|A0A553SFZ3|A0A553SFZ3_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09750PE=4SV=1	tr|A0A553SFZ3|A0A553SFZ3_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09750PE=4SV=1	tr|A0A553SFZ3|A0A553SFZ3_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09750PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3433837890625	2	589.341726	1176.6689	-2.1868	-0.0012888	4.2276	0.0024915	2.0407	0.0012027	589.3441619466173	148.26	4.549	146.82	145.53	150.08	-1.435					304	95	6	0	0	0	0.72319	1	14774	14774		27.882	1.1893	1	385010			40111	33097	33097	33121	43501	43501					0.08763210939059718
NKKVINKDS	9	Unmodified	_NKKVINKDS_					0	0	0		tr|A0A7D6W207|A0A7D6W207_9CLOTVWAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04665PE=4SV=1	tr|A0A7D6W207|A0A7D6W207_9CLOTVWAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04665PE=4SV=1	tr|A0A7D6W207|A0A7D6W207_9CLOTVWAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04665PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3031005859375	2	523.303655	1044.59276	-0.69596	-0.0003642	0.54848	0.00028702	-0.14748	-7.7179E-05	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.68424	1	13979	13979		21.96	1.4781	1	130240			40112	35419	33098	33122	43502	43502					0.07224530363282611
NKKVINKDS	9	Unmodified	_NKKVINKDS_					0	0	0		tr|A0A7D6W207|A0A7D6W207_9CLOTVWAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04665PE=4SV=1	tr|A0A7D6W207|A0A7D6W207_9CLOTVWAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04665PE=4SV=1	tr|A0A7D6W207|A0A7D6W207_9CLOTVWAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04665PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3035278320312	2	523.303655	1044.59276	-2.1228	-0.0011108	2.0352	0.001065	-0.087543	-4.5811E-05	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.55011	2	11426	11333;11426		37.812	7.4938	1	183010			40113	35419	33098	33122	43503;43504	43504					0.07224530363282611
NKKVIVARE	9	Unmodified	_NKKVIVARE_					0	0	0		tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.3051147460938	2	528.82984	1055.64513	-1.2092	-0.00063949	-1.5995	-0.00084586	-2.8087	-0.0014853	528.8295255745136	103.94	0.74268	103.36	103.13	103.87	-0.57639					24	14	2	0	0	0	0.027433	1	9625	9625		45.972	11.8	1	70179			40114	35399	33099	33123	43505	43505					0.11953113496883816
NKKVKALA	8	Unmodified	_NKKVKALA_					0	0	0			REV__PHF19|p.N31K|1|0.03|ENSG00000119403|chr9:120874649-120874649|G/C|missense_variant	REV__PHF19|p.N31K|1|0.03|ENSG00000119403|chr9:120874649-120874649|G/C|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	436.28961181640625	2	436.28982	870.565087	0.1951	8.512E-05	-0.004364	-1.904E-06	0.19074	8.3216E-05	436.2896740830774	37.95	0.72505	37.95	37.761	38.486	0					32	15	3	0	0	0	0.61758	1	2125	2125		60.294	14.342	1	438150	+		40115	29290	33100	33124	43506	43506					0.12462671893695187
NKKVNKLDK	9	Unmodified	_NKKVNKLDK_					0	0	0		tr|A0A7D6W2W2|A0A7D6W2W2_9CLOTDUF2087domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07565PE=4SV=1	tr|A0A7D6W2W2|A0A7D6W2W2_9CLOTDUF2087domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07565PE=4SV=1	tr|A0A7D6W2W2|A0A7D6W2W2_9CLOTDUF2087domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07565PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	544.8206787109375	2	543.835123	1085.65569	0.38517	0.00020947	-4.344	-0.0023624	-3.9589	-0.002153	544.3323086777162	104.29	0.72616	102.86	102.6	103.33	-1.4347					19	13	2	0	0	0	0.027462	1	7280	7280		37.159	9.2769	1	11208			40116	35440	33101	33125	43507	43507					0.11629096151295926
NKKWLIREDKE	11	Unmodified	_NKKWLIREDKE_					0	0	0			REV__ENST00000467733.1_1_3:156262080-156272878:-|nuORF	REV__ENST00000467733.1_1_3:156262080-156272878:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	487.2912292480469	3	486.940297	1457.79906	-6.8696	-0.0033451	2.6462	0.0012886	-4.2234	-0.0020565	487.2752799668706	158.17	0.13391	156.9	156.81	156.94	-1.267					6	4	2	0	0	0	0.026472	1	13649	13649		12.433	0.50046	1	8886.3	+		40117	18204	33102	33126	43508	43508					0.0884747847176186
NKKYHEVLD	9	Unmodified	_NKKYHEVLD_					0	0	0			REV__ENSG00000179295|ENST00000351677|PTPN11	REV__ENSG00000179295|ENST00000351677|PTPN11	MULTI-SECPEP	OvCa9_classI_Rep4_	4	574.286865234375	2	573.301113	1144.58767	-0.067821	-3.8882E-05	-1.0417	-0.00059723	-1.1096	-0.00063611	573.3005954758439	112.79	1.2489	111.29	110.75	112	-1.4993					40	24	3	0	0	0	0.027462	1	10427	10427		27.882	3.3631	1	96577	+		40118	22117	33103	33127	43509	43509					0.02116226500652374
NKKYHEVLD	9	Unmodified	_NKKYHEVLD_					0	0	0			REV__ENSG00000179295|ENST00000351677|PTPN11	REV__ENSG00000179295|ENST00000351677|PTPN11	MULTI-MATCH	OvCa9_classI_Rep2	2		2	573.301113	1144.58767	-0.56693	-0.00032502	0.53228	0.00030516	-0.034653	-1.9867E-05	573.3014457326537	111.6	0.93542	111.46	110.98	111.91	-0.13961	0.10041	0.001705	NaN	27.882	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43510	+		40119	22117	33103	33127							0.02116226500652374
NKKYHEVLD	9	Unmodified	_NKKYHEVLD_					0	0	0			REV__ENSG00000179295|ENST00000351677|PTPN11	REV__ENSG00000179295|ENST00000351677|PTPN11	MULTI-MATCH	OvCa9_classI_Rep3	3		2	573.301113	1144.58767	1.3771	0.00078951	-2.4258	-0.0013907	-1.0487	-0.00060123	573.2995829351146	112.41	0.49203	111.33	110.97	111.46	-1.0753	-0.02814	-0.0016868	NaN	27.882	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76285	+		40120	22117	33103	33127							0.02116226500652374
NKKYVQVT	8	Unmodified	_NKKYVQVT_					0	0	0		tr|A0A7D6VRF7|A0A7D6VRF7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00700PE=4SV=1	tr|A0A7D6VRF7|A0A7D6VRF7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00700PE=4SV=1	tr|A0A7D6VRF7|A0A7D6VRF7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00700PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.2911682128906	2	490.282192	978.549831	1.924	0.0009433	0.32514	0.00015941	2.2491	0.0011027	490.28222575013336	93.85	0.46056	93.85	93.59	94.051	0					16	10	2	0	0	0	0.028476	1	10214	10214		24.203	0	1	300410			40121	34926	33104	33128	43510	43510					0.05969760305856653
NKLAAFTDAP	10	Unmodified	_NKLAAFTDAP_					0	0	0			REV__ENSG00000140575|ENST00000268182|IQGAP1	REV__ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	OvCa9_classI_Rep2	2	524.2765502929688	2	524.277106	1046.53966	0.77919	0.00040851	-1.2393	-0.00064976	-0.46015	-0.00024125	524.2763197731864	41.272	1.9717	38.562	38.093	40.065	-2.7097					88	39	4	0	0	0	0.33376	1	2134	2134		76.774	11.309	1	944830	+		40122	19688	33105	33129	43511	43511					0.018251525805908386
NKLAAKVLL	9	Unmodified	_NKLAAKVLL_					0	0	0			REV__ENSG00000102699|ENST00000381989|PARP4	REV__ENSG00000102699|ENST00000381989|PARP4	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.31524658203125	2	485.326402	968.638252	0.13959	6.7744E-05	3.2524	0.0015785	3.392	0.0016462	485.32783872443264	62.496	0.40822	62.496	62.253	62.661	0					14	9	2	0	0	0	0.027462	1	5537	5537		17.365	5.8539	1	352140	+		40123	17567	33106	33130	43512	43512					0.15267800616322802
NKLAAKVLLLI	11	Unmodified	_NKLAAKVLLLI_					0	0	0			REV__ENSG00000102699|ENST00000381989|PARP4	REV__ENSG00000102699|ENST00000381989|PARP4	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.3176879882812	2	598.410466	1194.80638	2.8134	0.0016836	2.2068	0.0013206	5.0202	0.0030041	598.4115161829532	107.88	0.38255	107.88	107.77	108.16	0					11	8	2	0	0	0	0.026339	1	12184	12184		5.9211	0.70096	1	297540	+		40124	17567	33107	33131	43513	43513					0.216768628101363
NKLAEAGYT	9	Unmodified	_NKLAEAGYT_					0	0	0			REV__tr|A0A7D6ZYE1|A0A7D6ZYE1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02290PE=3SV=1	REV__tr|A0A7D6ZYE1|A0A7D6ZYE1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02290PE=3SV=1	MSMS	OvCa9_classI_Rep4_	4	483.74456787109375	2	483.748182	965.481811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	155.52	1	154.03	153.53	154.53	-1.4911								0	0	0	0.21446	1	15402	15402		24.203	0	1		+		40125	32367	33108	33132	43514	43514					-0.002311093448156498
NKLANQIGI	9	Unmodified	_NKLANQIGI_					0	0	0			REV__tr|A0A553SGB5|A0A553SGB5_NIACIDNA-3-methyladenineglycosylaseIIOS=NialliacirculansOX=1397GN=CEQ21_10530PE=4SV=1	REV__tr|A0A553SGB5|A0A553SGB5_NIACIDNA-3-methyladenineglycosylaseIIOS=NialliacirculansOX=1397GN=CEQ21_10530PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	485.773681640625	2	485.787641	969.56073	0.77334	0.00037568	-1.5308	-0.00074364	-0.75745	-0.00036796	485.78686823417434	43.028	0.98787	40.318	39.67	40.658	-2.7097					25	19	2	0	0	0	0.027462	1	2357	2357		30.504	0	1	9128.5	+		40126	29682	33109	33133	43515	43515					0.07473162680128098
NKLASLVLL	9	Unmodified	_NKLASLVLL_					0	0	0			REV__ENST00000546500.5_1_12:54680429-54680576:+|nuORF	REV__ENST00000546500.5_1_12:54680429-54680576:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	485.8158874511719	2	485.81841	969.622267	0.0571	2.774E-05	-2.721	-0.0013219	-2.6639	-0.0012942	485.81684222947626	21.182	0.26964	21.182	21.061	21.331	0					18	7	3	0	0	0	0.71901	1	97	97		11.511	0	1	63308	+		40127	27423	33110	33134	43516	43516					0.13624094379429152
NKLCQWFYP	9	Unmodified	_NKLCQWFYP_					0	0	0			REV__ENSG00000196664|ENST00000380659|TLR7	REV__ENSG00000196664|ENST00000380659|TLR7	MULTI-SECPEP	OvCa99_classI_Rep5	1	599.988525390625	2	599.789327	1197.5641	1.0728	0.00064346	-2.5698	-0.0015414	-1.497	-0.0008979	600.2885875150148	157.68	0.30585	157.68	157.55	157.85	0					6	5	2	0	0	0	0.027462	1	18479	18479		37.159	12.64	1	13500	+		40128	22854	33111	33135	43517	43517					-0.02677910537522621
NKLCYDLYF	9	Unmodified	_NKLCYDLYF_					0	0	0			REV__tr|A0A553SIW4|A0A553SIW4_NIACIGlycosyltransferasefamily2proteinOS=NialliacirculansOX=1397GN=CEQ21_15635PE=4SV=1	REV__tr|A0A553SIW4|A0A553SIW4_NIACIGlycosyltransferasefamily2proteinOS=NialliacirculansOX=1397GN=CEQ21_15635PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.8174438476562	2	589.781167	1177.54778	1.9692	0.0011614	0.10123	5.9703E-05	2.0704	0.0012211	589.7811438245712	110.34	0.53857	110.34	110.09	110.63	0					15	11	2	0	0	0	0.027462	1	12541	12541		24.203	12.692	1	116970	+		40129	29938	33112	33136	43518	43518					-0.033890364942863016
NKLDETILL	9	Unmodified	_NKLDETILL_					0	0	0			REV__PPID|p.L268Ffs*19|1|0.04|ENSG00000171497|chr4:158713211-158713212|-/GAAGGTAAAA|frameshift_variant	REV__PPID|p.L268Ffs*19|1|0.04|ENSG00000171497|chr4:158713211-158713212|-/GAAGGTAAAA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.7999267578125	2	529.808239	1057.60193	-1.1969	-0.00063411	-0.87547	-0.00046383	-2.0723	-0.0010979	529.8076712243487	101.82	1.4541	99.552	98.838	100.29	-2.2665					73	28	5	0	0	0	0.16524	1	9160	9160		82.305	12.677	1	177360	+		40130	21619	33113	33137	43519	43519					0.07542878928961727
NKLDVGAILL	10	Unmodified	_NKLDVGAILL_					0	0	0		ENSG00000142185|ENST00000397928|TRPM2;nc|ENSG00000142185|O94759-2|TRPM2	ENSG00000142185|ENST00000397928|TRPM2	ENSG00000142185|ENST00000397928|TRPM2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.833251953125	2	528.326599	1054.63865	-0.89169	-0.00047111	0.30972	0.00016363	-0.58197	-0.00030747	528.3266242942095	105.44	0.84344	103.42	103	103.85	-2.0161					32	16	3	0	0	0	0.026464	1	9592	9592		51.193	1.6567	1	163270			40131	4959	33114	33138	43520	43520					0.11351175545541992
NKLEDVLD	8	Unmodified	_NKLEDVLD_					0	0	0			REV__tr|A0A553SQ40|A0A553SQ40_NIACIArgininerepressorOS=NialliacirculansOX=1397GN=argRPE=3SV=1	REV__tr|A0A553SQ40|A0A553SQ40_NIACIArgininerepressorOS=NialliacirculansOX=1397GN=argRPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	472.29522705078125	2	473.248015	944.481476	-0.042236	-1.9988E-05	-0.2988	-0.00014141	-0.34104	-0.0001614	473.2480473209418	95.676	0.5396	93.847	93.682	94.221	-1.8286					13	10	2	0	0	0	0.028476	1	6234	6234		45.952	0	1	21334	+		40132	30603	33115	33139	43521	43521					0.007014709353256876
NKLEQININ	9	Unmodified	_NKLEQININ_					0	0	0			REV__tr|A0A7D6VNM4|A0A7D6VNM4_9CLOTDinBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15930PE=4SV=1	REV__tr|A0A7D6VNM4|A0A7D6VNM4_9CLOTDinBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15930PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.302978515625	2	543.301113	1084.58767	-0.70706	-0.00038415	-0.15339	-8.3338E-05	-0.86046	-0.00046749	543.300902232147	62.249	1.024	58.791	58.57	59.594	-3.4577					48	20	4	0	0	0	0.045281	1	4312	4312		122.18	1.3076	1	281380	+		40133	31193	33116	33140	43522	43522					0.04876226500641678
NKLEQININ	9	Unmodified	_NKLEQININ_					0	0	0			REV__tr|A0A7D6VNM4|A0A7D6VNM4_9CLOTDinBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15930PE=4SV=1	REV__tr|A0A7D6VNM4|A0A7D6VNM4_9CLOTDinBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15930PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	543.301113	1084.58767	-1.8113	-0.00098408	0.83818	0.00045538	-0.97312	-0.0005287	543.3019008503691	61.613	0.96491	58.854	58.568	59.533	-2.7593	0.031315	0.00071332	NaN	122.18	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49927	+		40134	31193	33116	33140							0.04876226500641678
NKLEQININ	9	Unmodified	_NKLEQININ_					0	0	0			REV__tr|A0A7D6VNM4|A0A7D6VNM4_9CLOTDinBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15930PE=4SV=1	REV__tr|A0A7D6VNM4|A0A7D6VNM4_9CLOTDinBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15930PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	543.301113	1084.58767	-0.70706	-0.00038415	-0.15339	-8.3338E-05	-0.86046	-0.00046749	543.300902232147	62.249	1.024	58.791	58.57	59.594	-3.4577	-0.031315	-0.00036412	NaN	122.18	48	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	281380	+		40135	31193	33116	33140							0.04876226500641678
NKLEQLTINK	10	Unmodified	_NKLEQLTINK_					0	0	0			REV__tr|A0A7D6ZRV9|A0A7D6ZRV9_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05275PE=4SV=1	REV__tr|A0A7D6ZRV9|A0A7D6ZRV9_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05275PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.23419189453125	3	400.903072	1199.68739	1.5053	0.00060346	0.14345	5.7509E-05	1.6487	0.00066097	400.90293193037246	32.088	0.49611	32.088	31.857	32.353	0					13	8	2	0	0	0	0.026881	1	1345	1345		37.508	0	1	218340	+		40136	32169	33117	33141	43523	43523					0.09553044114591103
NKLGIAGSIN	10	Unmodified	_NKLGIAGSIN_					0	0	0		tr|A0A7D6VPP1|A0A7D6VPP1_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23675PE=4SV=1;tr|A0A7D6ZV75|A0A7D6ZV75_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_14075PE=4SV=1	tr|A0A7D6VPP1|A0A7D6VPP1_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23675PE=4SV=1;tr|A0A7D6ZV75|A0A7D6ZV75_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_14075PE=4SV=1	tr|A0A7D6VPP1|A0A7D6VPP1_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23675PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.30120849609375	2	493.785099	985.555644	-0.67825	-0.00033491	0.91819	0.00045339	0.23994	0.00011848	493.7852147836093	92.958	0.95043	90.45	90.262	91.212	-2.5072					47	19	3	0	0	0	0.027363	1	8066	8066		75.043	0	1	387210			40137	34783;35794	33118	33142	43524	43524					0.06228858817519267
NKLGKIKH	8	Unmodified	_NKLGKIKH_					0	0	0			REV__ENSG00000157578|ENST00000288350|LCA5L	REV__ENSG00000157578|ENST00000288350|LCA5L	MSMS	OvCa99_classI_Rep5	1	469.30194091796875	2	469.300719	936.586885	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.2	1	132.2	131.7	132.7	0								0	0	0	0.30129	1	15361	15361		26.796	1.3459	1		+		40138	20523	33119	33143	43525	43525					0.11605476642273516
NKLHGKPDK	9	Unmodified	_NKLHGKPDK_					0	0	0		nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;nc|ENSG00000165219|Q14C86-3|GAPVD1	nc|ENSG00000165219|Q14C86-5|GAPVD1	nc|ENSG00000165219|Q14C86-5|GAPVD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.7638549804688	2	518.79854	1035.58253	-1.0728	-0.00055659	0.69821	0.00036223	-0.37464	-0.00019436	518.7988606506786	42.264	0.42854	42.264	42.024	42.453	0					15	9	2	0	0	0	0.027462	1	2696	2696		30.504	0	1	245800			40139	6537	33120	33144	43526	43526					0.06615967428683689
NKLHRRLI	8	Unmodified	_NKLHRRLI_					0	0	0			REV__ENST00000361138.6_1_9:72897446-72901170:+|nuORF	REV__ENST00000361138.6_1_9:72897446-72901170:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.2976684570312	2	525.338167	1048.66178	-0.38755	-0.0002036	0.032565	1.7107E-05	-0.35499	-0.00018649	525.3380340744582	47.921	0.91721	44.813	44.482	45.399	-3.1077					37	17	3	0	0	0	0.028476	1	2659	2659		33.516	5.6333	1	96111	+		40140	24844	33121	33145	43527	43527					0.1393965917350215
NKLHSGKIVE	10	Unmodified	_NKLHSGKIVE_					0	0	0			REV__nc|ENSG00000215127|Q58G82|SYT14P1	REV__nc|ENSG00000215127|Q58G82|SYT14P1	MULTI-MSMS	OvCa99_classI_Rep5	1	562.823974609375	2	562.824755	1123.63496	0.96454	0.00054287	-1.3658	-0.00076873	-0.40131	-0.00022587	562.8238603336955	45.474	0.90855	45.474	45.245	46.154	0					43	20	3	0	0	0	0.40664	1	3140	3140		67.494	3.9598	1	2300800	+		40141	29132	33122	33146	43528	43528					0.07808505771663476
NKLHSGKIVE	10	Unmodified	_NKLHSGKIVE_					0	0	0			REV__nc|ENSG00000215127|Q58G82|SYT14P1	REV__nc|ENSG00000215127|Q58G82|SYT14P1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	562.824755	1123.63496	-0.32752	-0.00018434	-1.43	-0.00080486	-1.7576	-0.0009892	562.8240705901401	48.045	0.4459	45.336	45.133	45.578	-2.7097	-0.073527	-0.00010999	NaN	67.494	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9708.8	+		40142	29132	33122	33146							0.07808505771663476
NKLHSGKIVE	10	Unmodified	_NKLHSGKIVE_					0	0	0			REV__nc|ENSG00000215127|Q58G82|SYT14P1	REV__nc|ENSG00000215127|Q58G82|SYT14P1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	562.824755	1123.63496	0.71479	0.0004023	-0.2632	-0.00014814	0.45159	0.00025417	562.8246239662617	48.525	0.72289	45.417	45.039	45.761	-3.1077	0.0082424	0.0012035	NaN	67.494	23	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30860	+		40143	29132	33122	33146							0.07808505771663476
NKLIININFL	10	Unmodified	_NKLIININFL_					0	0	0		tr|A0A7D6ZVQ8|A0A7D6ZVQ8_9CLOTSpo0Efamilysporulationregulatoryprotein-asparticacidphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_15865PE=4SV=1	tr|A0A7D6ZVQ8|A0A7D6ZVQ8_9CLOTSpo0Efamilysporulationregulatoryprotein-asparticacidphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_15865PE=4SV=1	tr|A0A7D6ZVQ8|A0A7D6ZVQ8_9CLOTSpo0Efamilysporulationregulatoryprotein-asparticacidphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_15865PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	400.57891845703125	3	401.248291	1200.72304	1.8777	0.00075341	-3.5563	-0.0014269	-1.6786	-0.00067353	401.2465231050903	20.403	0.68261	19.065	18.729	19.412	-1.3386					15	13	2	0	0	0	0.027001	1	40	40		28.081	8.8188	1	16379			40144	35809	33123	33147	43529	43529					0.130711263622743
NKLKFIHR	8	Unmodified	_NKLKFIHR_					0	0	0			REV__ENSG00000157259|ENST00000287957|GATAD1	REV__ENSG00000157259|ENST00000287957|GATAD1	MULTI-MSMS	OvCa9_classI_Rep3	3	528.3284301757812	2	528.327268	1054.63998	0.33475	0.00017686	2.1366	0.0011288	2.4714	0.0013057	528.3282724916941	128.79	3.3005	127.69	127.27	130.57	-1.0933					188	66	4	0	0	0	0.66704	2	10211	10211;10327		50.025	11.218	1	235110	+		40145	20516	33124	33148	43530;43531	43530					0.11484854424929836
NKLKIKARE	9	Unmodified	_NKLKIKARE_					0	0	0		ENSG00000144821|ENST00000693548|MYH15	ENSG00000144821|ENST00000693548|MYH15	ENSG00000144821|ENST00000693548|MYH15	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.8261108398438	2	550.35094	1098.68733	1.8706	0.0010295	3.9169	0.0021557	5.7875	0.0031852	550.3530838754754	85.645	0.44767	85.645	85.422	85.87	0					14	10	2	0	0	0	0.027411	1	8996	8996		84.916	22.808	1	283000			40146	5183	33125	33149	43532	43532					0.1419308890526736
NKLKIPLVL	9	Unmodified	_NKLKIPLVL_					0	0	0		nc|ENSG00000124786|Q9H1N7-3|SLC35B3	nc|ENSG00000124786|Q9H1N7-3|SLC35B3	nc|ENSG00000124786|Q9H1N7-3|SLC35B3	MULTI-MSMS	OvCa99_classI_Rep5	1	519.359130859375	2	519.357702	1036.70085	0.82501	0.00042847	1.6002	0.0008311	2.4253	0.0012596	519.3584020887864	146.23	0.54117	146.23	146.03	146.57	0					24	10	3	0	0	0	0.70177	1	17103	17103		17.365	0.89182	1	68709			40147	15000	33126	33150	43533	43533					0.18396946684492832
NKLKLVHSNL	10	Unmodified	_NKLKLVHSNL_					0	0	0		nc|ENSG00000128581|Q9H7X7-3|IFT22;nc|ENSG00000128581|Q9H7X7-2|IFT22;ENSG00000128581|ENST00000315322|IFT22	nc|ENSG00000128581|Q9H7X7-3|IFT22	nc|ENSG00000128581|Q9H7X7-3|IFT22	MSMS	OvCa99_classI_Rep5	1	583.3587646484375	2	583.356222	1164.69789	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.53	1	120.53	120.03	121.03	0								0	0	0	0.13951	1	13853	13853		52.937	13.684	1				40148	3887	33127	33151	43534	43534					0.12213071559699529
NKLKMLPK	8	Unmodified	_NKLKMLPK_					0	0	0		ENST00000420734.1_1_1:87510839-87511187:-|nuORF	ENST00000420734.1_1_1:87510839-87511187:-|nuORF	ENST00000420734.1_1_1:87510839-87511187:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	486.3089294433594	2	486.307155	970.599758	-0.18045	-8.7756E-05	2.8294	0.001376	2.6489	0.0012882	486.3086617029968	30.458	2.1167	30.458	30.236	32.353	0					101	42	5	0	0	0	0.7043	1	1205	1205		42.474	0.078325	1	12226000			40149	11675	33128	33152	43535	43535					0.11328171710147217
NKLKVVAVE	9	Unmodified	_NKLKVVAVE_					0	0	0			REV__nc|ENSG00000143776|Q5VT25-3|CDC42BPA	REV__nc|ENSG00000143776|Q5VT25-3|CDC42BPA	MULTI-MSMS	OvCa9_classI_Rep3	3	500.3131103515625	2	500.313492	998.612431	0.37155	0.00018589	-0.7555	-0.00037799	-0.38395	-0.00019209	500.31302313941114	128.99	2.6573	127.9	127.57	130.22	-1.0933					135	53	5	0	0	0	0.40667	1	10267	10267		51.335	8.4712	1	747300	+		40150	19867	33129	33153	43536	43536					0.11306906374034043
NKLLCTFR	8	Unmodified	_NKLLCTFR_					0	0	0			REV__ENSG00000153283|ENST00000352690|CD96	REV__ENSG00000153283|ENST00000352690|CD96	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.28271484375	2	497.778762	993.542971	-0.11491	-5.7202E-05	1.9389	0.00096515	1.824	0.00090795	497.7793570241327	30.949	0.1965	30.949	30.831	31.027	0					8	3	3	0	0	0	0.028476	1	1218	1218		66.429	22.312	1	32202	+		40151	20334	33130	33154	43537	43537					0.04594124153629764
NKLLKKYN	8	Unmodified	_NKLLKKYN_					0	0	0		tr|A0A7D6VNP8|A0A7D6VNP8_9CLOTGlycosyltransferasefamily4proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18770PE=4SV=1	tr|A0A7D6VNP8|A0A7D6VNP8_9CLOTGlycosyltransferasefamily4proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18770PE=4SV=1	tr|A0A7D6VNP8|A0A7D6VNP8_9CLOTGlycosyltransferasefamily4proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18770PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	510.25634765625	2	510.813659	1019.61277	-1.2494	-0.00063823	2.3433	0.001197	1.0939	0.00055878	510.8145661283897	93.548	0.70628	91.586	91.228	91.935	-1.9617					19	13	2	0	0	0	0.028476	1	6008	6008		33.516	0	1	38003			40152	34722	33131	33155	43538	43538					0.10374326093892705
NKLLLLTAE	9	Unmodified	_NKLLLLTAE_					0	0	0			REV__ENSG00000134250|ENST00000256646|NOTCH2	REV__ENSG00000134250|ENST00000256646|NOTCH2	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.8127136230469	2	507.813325	1013.6121	2.597	0.0013188	-1.0934	-0.00055524	1.5036	0.00076353	507.8124916318383	106.27	0.52407	106.27	105.97	106.49	0					16	8	2	0	0	0	0.027462	1	11966	11966		19.997	4.355	1	431440	+		40153	19188	33132	33156	43539	43539					0.10583486654184071
NKLLNKLF	8	Unmodified	_NKLLNKLF_					0	0	0		ENST00000472637.5_1_3:112724385-112732818:-|nuORF;nc|ENSG00000163608|Q6NW34-2|NEPRO;ENSG00000163608|ENST00000314400|NEPRO;ENST00000464816.1_1_3:112729450-112730081:-|nuORF;ENST00000472762.5_1_3:112728377-112730081:-|nuORF	ENST00000472637.5_1_3:112724385-112732818:-|nuORF	ENST00000472637.5_1_3:112724385-112732818:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.802978515625	2	495.310752	988.606951	2.2718	0.0011253	0.22168	0.0001098	2.4935	0.0012351	495.3106216553074	94.914	0.59578	94.914	94.648	95.244	0					23	13	2	0	0	0	0.028476	1	10346	10346		18.324	0	1	622190			40154	6332	33133	33157	43540	43540					0.11219227582228086
NKLLTLPNGE	10	Unmodified	_NKLLTLPNGE_					0	0	0		DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.F3496Wfs*92|1|0.14|ENSG00000197102|chr14:102034043-102034044|-/GACCTGGCAGCTGTCGAGGC|frameshift_variant;DYNC1H1|p.P2596Tfs*19|1|0.06|ENSG00000197102|chr14:102016936-102016937|-/A|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	549.291259765625	2	549.811313	1097.60807	-0.22432	-0.00012333	0.22043	0.0001212	-0.003888	-2.1377E-06	549.8129505754853	69.129	0.94722	66.508	66.217	67.164	-2.6203					24	18	2	0	0	0	0.026734	1	5455	5455		47.657	15.702	1	14933			40155	767	33134	33158	43541	43541					0.06317397160478322
NKLPAPIGLI	10	Unmodified	_NKLPAPIGLI_					0	0	0			REV__ENST00000272542.7_1_2:113420608-113420746:+|nuORF	REV__ENST00000272542.7_1_2:113420608-113420746:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.3180541992188	2	518.331685	1034.64882	0.53845	0.0002791	1.8876	0.00097839	2.426	0.0012575	518.3323872547645	139.75	0.41364	139.75	139.51	139.92	0					10	8	2	0	0	0	0.027117	1	16332	16332		16.473	0	1	32282	+		40156	24078	33135	33159	43542	43542					0.1328778327076634
NKLPFATGPPS	11	Unmodified	_NKLPFATGPPS_					0	0	0			REV__ENSG00000120322|ENST00000239444|PCDHB8	REV__ENSG00000120322|ENST00000239444|PCDHB8	MULTI-MSMS	OvCa9_classI_Rep2	2	564.8043823242188	2	564.806031	1127.59751	-0.6708	-0.00037887	1.0893	0.00061522	0.41845	0.00023634	564.8065459691159	99.395	2.9276	98.564	97.919	100.85	-0.83052					122	58	4	0	0	0	0.65063	1	9070	9070		40.058	0.80534	1	405350	+		40157	18496	33136	33160	43543	43543					0.038814145060541705
NKLPHTLSCY	10	Unmodified	_NKLPHTLSCY_					0	0	0			REV__CSMD1|p.Y2458Efs*21|1|0.08|ENSG00000183117|chr8:3087202-3087203|-/TGAAAATTTC|frameshift_variant	REV__CSMD1|p.Y2458Efs*21|1|0.08|ENSG00000183117|chr8:3087202-3087203|-/TGAAAATTTC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	588.308349609375	2	588.297516	1174.58048	-0.70778	-0.00041639	2.7287	0.0016053	2.0209	0.0011889	588.8008235505224	82.634	0.8298	79.951	79.684	80.514	-2.6829					24	16	2	0	0	0	0.027056	1	6826	6826		27.882	15.676	1	59760	+		40158	16243	33137	33161	43544	43544					0.00017170628575513547
NKLPHTLSCY	10	Unmodified	_NKLPHTLSCY_					0	0	0			REV__CSMD1|p.Y2458Efs*21|1|0.08|ENSG00000183117|chr8:3087202-3087203|-/TGAAAATTTC|frameshift_variant	REV__CSMD1|p.Y2458Efs*21|1|0.08|ENSG00000183117|chr8:3087202-3087203|-/TGAAAATTTC|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	588.297516	1174.58048	0.12409	7.2999E-05	2.5685	0.001511	2.6926	0.001584	588.2989591241133	81.924	0.46809	80.276	80.075	80.543	-1.6485	0.2097	-0.0051078	NaN	20.947	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23584	+		40159	16243	33137	33161							0.00017170628575513547
NKLPHTLSCY	10	Unmodified	_NKLPHTLSCY_					0	0	0			REV__CSMD1|p.Y2458Efs*21|1|0.08|ENSG00000183117|chr8:3087202-3087203|-/TGAAAATTTC|frameshift_variant	REV__CSMD1|p.Y2458Efs*21|1|0.08|ENSG00000183117|chr8:3087202-3087203|-/TGAAAATTTC|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	588.297516	1174.58048	-2.4109	-0.0014183	8.8956	0.0052332	6.4847	0.0038149	588.3026619773806	82.268	0.89441	79.972	79.735	80.629	-2.2963	-0.094616	0.0023366	NaN	20.947	46	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206090	+		40160	16243	33137	33161							0.00017170628575513547
NKLPLPSKSV	10	Unmodified	_NKLPLPSKSV_					0	0	0		TSC1|p.R721Qfs*9|1|0.87|ENSG00000165699|chr9:132903687-132903697|GATCACCTTGC/-|frameshift_variant;ENSG00000165699|ENST00000298552|TSC1;nc|ENSG00000165699|Q92574-2|TSC1	TSC1|p.R721Qfs*9|1|0.87|ENSG00000165699|chr9:132903687-132903697|GATCACCTTGC/-|frameshift_variant	TSC1|p.R721Qfs*9|1|0.87|ENSG00000165699|chr9:132903687-132903697|GATCACCTTGC/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.78515625	2	541.832049	1081.64954	-0.38309	-0.00020757	-1.5365	-0.00083255	-1.9196	-0.0010401	542.3318745257559	90.929	0.55324	88.849	88.722	89.275	-2.0805					12	10	2	0	0	0	0.02658	1	5687	5687		45.972	0	1	7514.4			40161	6594	33138	33162	43545	43545					0.1119857791979939
NKLQADPK	8	Unmodified	_NKLQADPK_					0	0	0		ENST00000466374.1_1_22:38453534-38463917:+|nuORF;nc|ENSG00000100151|Q9NRD5-2|PICK1;ENST00000484021.5_1_22:38453431-38470088:+|nuORF;ENSG00000100151|ENST00000356976|PICK1	ENST00000466374.1_1_22:38453534-38463917:+|nuORF	ENST00000466374.1_1_22:38453534-38463917:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.8037414550781	2	457.258717	912.50288	0.10899	4.9838E-05	3.9359	0.0017997	4.0449	0.0018496	457.2603955016046	56.825	0.77205	56.825	56.581	57.353	0					28	17	2	0	0	0	0.028476	1	4710	4710		35.201	13.498	1	939680			40162	2016	33139	33163	43546	43546					0.04312900754700877
NKLRKPKLP	9	Unmodified	_NKLRKPKLP_					0	0	0		TCOF1|p.G1121R|1|0.22|ENSG00000070814|chr5:150392020-150392020|G/A|missense_variant;TCOF1|p.G1121E|1|0.05|ENSG00000070814|chr5:150392021-150392021|G/A|missense_variant;nc|ENSG00000070814|Q13428-2|TCOF1;nc|ENSG00000070814|Q13428-8|TCOF1;nc|ENSG00000070814|Q13428-6|TCOF1;nc|ENSG00000070814|Q13428-7|TCOF1;nc|ENSG00000070814|Q13428|TCOF1;ENSG00000070814|ENST00000643257|TCOF1;nc|ENSG00000070814|Q13428-4|TCOF1	TCOF1|p.G1121R|1|0.22|ENSG00000070814|chr5:150392020-150392020|G/A|missense_variant	TCOF1|p.G1121R|1|0.22|ENSG00000070814|chr5:150392020-150392020|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.3450927734375	2	547.36385	1092.71315	-0.70078	-0.00038358	-0.36968	-0.00020235	-1.0705	-0.00058593	547.3631680130239	36.141	0.13668	36.141	36.074	36.211	0					4	2	2	0	0	0	0.027462	1	1872	1872		17.365	0	1	24749			40163	1437	33140	33164	43547	43547					0.17049983147535386
NKLRLFRKAM	10	Unmodified	_NKLRLFRKAM_					0	0	0		ENSG00000171724|ENST00000302536|VAT1L	ENSG00000171724|ENST00000302536|VAT1L	ENSG00000171724|ENST00000302536|VAT1L	MULTI-SECPEP	OvCa9_classI_Rep3	3	638.3378295898438	2	638.887167	1275.75978	0.2417	0.00015442	0.24259	0.00015499	0.48429	0.00030941	639.3876349303193	103.86	0.73351	102.43	102.08	102.81	-1.4347					30	13	3	0	0	0	0.027021	1	7208	7208		15.642	2.8301	1	28681			40164	7229	33141	33165	43548	43548					0.13293099707175315
NKLRQKLLY	9	Unmodified	_NKLRQKLLY_					0	0	0			REV__nc|ENSG00000153253|Q9NY46-4|SCN3A	REV__nc|ENSG00000153253|Q9NY46-4|SCN3A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	588.308349609375	2	588.36659	1174.71863	-0.99763	-0.00058697	0.48803	0.00028714	-0.5096	-0.00029983	588.3666538696845	81.867	1.0156	79.184	78.865	79.881	-2.6829					57	20	3	0	0	0	0.027462	1	6826	6826		19.36	0	1	175960	+		40165	20333	33142	33166	43549	43549					0.13825661939381462
NKLRQKLLY	9	Unmodified	_NKLRQKLLY_					0	0	0			REV__nc|ENSG00000153253|Q9NY46-4|SCN3A	REV__nc|ENSG00000153253|Q9NY46-4|SCN3A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	588.36659	1174.71863	-2.1772	-0.001281	2.0565	0.00121	-0.12074	-7.1042E-05	588.3676824234002	81.721	1.1506	79.398	79.106	80.257	-2.3226	0.10737	0.00041352	NaN	12.959	59	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175410	+		40166	20333	33142	33166							0.13825661939381462
NKLSPLGSLP	10	Unmodified	_NKLSPLGSLP_					0	0	0		ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	MULTI-MSMS	OvCa9_classI_Rep2	2	513.3023681640625	2	513.303124	1024.5917	-0.90798	-0.00046607	0.2818	0.00014465	-0.62618	-0.00032142	513.303241645798	102.61	2.5703	101.93	101.49	104.06	-0.68459					128	51	4	0	0	0	0.41408	1	9472	9472		66.429	9.7082	1	1179700			40167	1665	33143	33167	43550	43550					0.0803831599437217
NKLSSNYLD	9	Unmodified	_NKLSSNYLD_					0	0	0			REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1	REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.8090209960938	2	527.264196	1052.51384	-1.2392	-0.00065338	0.043463	2.2917E-05	-1.1957	-0.00063046	527.2641526299973	74.255	1.3872	71.024	70.095	71.483	-3.2308					61	28	3	0	0	0	0.027433	1	5842	5842		64.207	6.396	1	73332	+		40168	20578	33144	33168	43551	43551					-0.01031741661677188
NKLSSRVF	8	Unmodified	_NKLSSRVF_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.6084289550781	2	475.774534	949.534515	0.14986	7.1298E-05	-0.32916	-0.00015661	-0.1793	-8.5308E-05	475.7741575446327	79.484	1.3632	77.745	77.46	78.824	-1.7398					44	26	3	0	0	0	0.028476	1	6807	6807		47.916	0	1	107450			40169	6050	33145	33169	43552	43552					0.05772893508662946
NKLSSRVF	8	Unmodified	_NKLSSRVF_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	475.774534	949.534515	1.1386	0.00054172	-1.3781	-0.00065567	-0.23952	-0.00011396	475.7737144650766	79.882	1.2164	77.542	77.103	78.32	-2.3399	-0.091886	-0.00062706	NaN	47.916	49	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	209590			40170	6050	33145	33169							0.05772893508662946
NKLTENLQNKY	11	Unmodified	_NKLTENLQNKY_					0	0	0		tr|A0A7D6VZB3|A0A7D6VZB3_9CLOTATPsynthasesubunitdeltaOS=ClostridiumintestinaleOX=36845GN=atpHPE=3SV=1	tr|A0A7D6VZB3|A0A7D6VZB3_9CLOTATPsynthasesubunitdeltaOS=ClostridiumintestinaleOX=36845GN=atpHPE=3SV=1	tr|A0A7D6VZB3|A0A7D6VZB3_9CLOTATPsynthasesubunitdeltaOS=ClostridiumintestinaleOX=36845GN=atpHPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.25848388671875	3	455.577136	1363.70958	-1.0905	-0.00049679	-1.8015	-0.00082074	-2.892	-0.0013175	455.5763652413275	50.507	0.51951	47.366	47.132	47.651	-3.1416					15	9	2	0	0	0	0.026068	1	2920	2920		27.644	4.266	1	18076			40171	35355	33146	33170	43553	43553					0.0422722379237257
NKLTENLQNKY	11	Unmodified	_NKLTENLQNKY_					0	0	0		tr|A0A7D6VZB3|A0A7D6VZB3_9CLOTATPsynthasesubunitdeltaOS=ClostridiumintestinaleOX=36845GN=atpHPE=3SV=1	tr|A0A7D6VZB3|A0A7D6VZB3_9CLOTATPsynthasesubunitdeltaOS=ClostridiumintestinaleOX=36845GN=atpHPE=3SV=1	tr|A0A7D6VZB3|A0A7D6VZB3_9CLOTATPsynthasesubunitdeltaOS=ClostridiumintestinaleOX=36845GN=atpHPE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		3	455.577136	1363.70958	-0.025282	-1.1518E-05	-0.72416	-0.00032991	-0.74945	-0.00034143	455.57680780140964	47.401	0.3874	47.401	47.208	47.595	0	0.01509	0.0011018	NaN	27.644	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153220			40172	35355	33146	33170							0.0422722379237257
NKLTENLQNKY	11	Unmodified	_NKLTENLQNKY_					0	0	0		tr|A0A7D6VZB3|A0A7D6VZB3_9CLOTATPsynthasesubunitdeltaOS=ClostridiumintestinaleOX=36845GN=atpHPE=3SV=1	tr|A0A7D6VZB3|A0A7D6VZB3_9CLOTATPsynthasesubunitdeltaOS=ClostridiumintestinaleOX=36845GN=atpHPE=3SV=1	tr|A0A7D6VZB3|A0A7D6VZB3_9CLOTATPsynthasesubunitdeltaOS=ClostridiumintestinaleOX=36845GN=atpHPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	455.577136	1363.70958	0.2334	0.00010633	-2.454	-0.001118	-2.2206	-0.0010117	455.5757997679069	50.184	0.94335	47.39	46.884	47.827	-2.794	0.0047756	-0.0012625	NaN	27.644	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10242			40173	35355	33146	33170							0.0422722379237257
NKLTGKILY	9	Unmodified	_NKLTGKILY_					0	0	0			REV__tr|A0A553SS38|A0A553SS38_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_02370PE=3SV=1	REV__tr|A0A553SS38|A0A553SS38_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_02370PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	525.3214111328125	2	525.321317	1048.62808	0.086273	4.5321E-05	-0.47321	-0.00024859	-0.38694	-0.00020327	525.3209005823802	108.58	1.5334	108.35	108.03	109.56	-0.22498					66	30	4	0	0	0	0.50149	2	10176	10171;10176		42.396	8.2236	1	308970	+		40174	30800	33147	33171	43554;43555	43555					0.1057119289109778
NKLTHSFIN	9	Unmodified	_NKLTHSFIN_					0	0	0		tr|A0A7D7A258|A0A7D7A258_9CLOTFructose-1,6-bisphosphataseclass3OS=ClostridiumintestinaleOX=36845GN=fbpPE=3SV=1	tr|A0A7D7A258|A0A7D7A258_9CLOTFructose-1,6-bisphosphataseclass3OS=ClostridiumintestinaleOX=36845GN=fbpPE=3SV=1	tr|A0A7D7A258|A0A7D7A258_9CLOTFructose-1,6-bisphosphataseclass3OS=ClostridiumintestinaleOX=36845GN=fbpPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3304443359375	2	537.290548	1072.56654	-0.55884	-0.00030026	1.3094	0.00070354	0.75058	0.00040328	537.2906384971888	69.723	0.69913	69.723	69.184	69.883	0					23	16	2	0	0	0	0.027462	1	6596	6596		35.152	0	1	249110			40175	36064	33148	33172	43556	43556					0.03316261191821468
NKLVLSLEP	9	Unmodified	_NKLVLSLEP_					0	0	0		RIF1|p.L2186Qfs*51|1|0.07|ENSG00000080345|chr2:151466077-151466077|T/-|frameshift_variant;nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	RIF1|p.L2186Qfs*51|1|0.07|ENSG00000080345|chr2:151466077-151466077|T/-|frameshift_variant	RIF1|p.L2186Qfs*51|1|0.07|ENSG00000080345|chr2:151466077-151466077|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.79248046875	2	506.8055	1011.59645	-0.73375	-0.00037187	-0.49046	-0.00024857	-1.2242	-0.00062044	506.8051793208319	79.636	0.76875	76.884	76.657	77.425	-2.7514					31	15	3	0	0	0	0.027462	1	6466	6466		15.642	3.435	1	82597			40176	1634	33149	33173	43557	43557					0.09111200137135711
NKLYTFVI	8	Unmodified	_NKLYTFVI_					0	0	0			REV__tr|A0A7D7A069|A0A7D7A069_9CLOTArginine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=argSPE=3SV=1	REV__tr|A0A7D7A069|A0A7D7A069_9CLOTArginine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=argSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.7677001953125	2	499.289485	996.564418	-0.045429	-2.2682E-05	-0.17124	-8.5497E-05	-0.21667	-0.00010818	499.28915586273206	103.72	1.1508	102.28	101.97	103.12	-1.4347					38	21	3	0	0	0	0.028476	1	7225	7225		25.45	0	1	60299	+		40177	32438	33150	33174	43558	43558					0.06599832453991894
NKMDKKLLN	9	Unmodified	_NKMDKKLLN_					0	0	0			REV__nc|ENSG00000065534|Q15746-2|MYLK	REV__nc|ENSG00000065534|Q15746-2|MYLK	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.836669921875	2	552.315709	1102.61686	-1.1608	-0.00064112	2.9991	0.0016565	1.8383	0.0010153	552.3161775257121	108.97	0.31019	107.24	106.97	107.28	-1.7256					8	5	2	0	0	0	0.027433	1	9983	9983		74.255	5.4682	1	16702	+		40178	16797	33151	33175	43559	43559					0.06966047525315844
NKMEPIDIS	9	Unmodified	_NKMEPIDIS_					0	0	0			REV__tr|A0A7D6W3U7|A0A7D6W3U7_9CLOTBglGfamilytranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11245PE=4SV=1	REV__tr|A0A7D6W3U7|A0A7D6W3U7_9CLOTBglGfamilytranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11245PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	523.7653198242188	2	523.762975	1045.5114	1.0676	0.00055919	4.4771	0.002345	5.5448	0.0029041	523.7652678072772	149.25	0.48369	149.25	149.01	149.5	0					22	9	3	0	0	0	0.46356	1	17459	17459		45.972	3.4978	1	144520	+		40179	31924	33152	33176	43560	43560					-0.009539133909811426
NKMIAITSII	10	Unmodified	_NKMIAITSII_					0	0	0		tr|A0A553SMS2|A0A553SMS2_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_23110PE=3SV=1	tr|A0A553SMS2|A0A553SMS2_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_23110PE=3SV=1	tr|A0A553SMS2|A0A553SMS2_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_23110PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	552.3265380859375	2	552.328285	1102.64202	2.1245	0.0011734	-3.2722	-0.0018073	-1.1477	-0.0006339	552.3264511784496	121.87	1.5228	121.87	121.57	123.09	0					93	32	5	0	0	0	0.44431	1	14132	14132		62.107	3.3255	1	7703000			40180	33867	33153	33177	43561	43561					0.09480102327870554
NKMLDKIKV	9	Unmodified	_NKMLDKIKV_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4|ABCA13	REV__nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MSMS	OvCa99_classI_Rep5	1	544.8289184570312	2	544.828452	1087.64235	2.7549	0.0015009	-3.874	-0.0021107	-1.1191	-0.00060973	544.8261114723678	87.962	0.71288	87.962	87.586	88.298	0					38	16	3	0	0	0	0.42676	1	9332	9332		49.442	3.4693	1	1242300	+		40181	22143	33154	33178	43562	43562					0.10203522047731894
NKMLKMEKV	9	Unmodified	_NKMLKMEKV_					0	0	0		nc|ENSG00000054523|O60333-3|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	MULTI-MSMS	OvCa99_classI_Rep5	1	560.8228149414062	2	560.814487	1119.61442	2.0963	0.0011757	3.5787	0.002007	5.675	0.0031826	560.8158867229721	119.78	0.5947	119.78	119.5	120.09	0					23	14	2	0	0	0	0.33652	1	13777	13777		58.782	0.55203	1	410390			40182	14875	33155	33179	43563	43563					0.05939875795979788
NKMLMASR	8	Unmodified	_NKMLMASR_					0	0	0			REV__ENSG00000114656|ENST00000645291|CFAP92	REV__ENSG00000114656|ENST00000645291|CFAP92	MULTI-MSMS	OvCa99_classI_Rep5	1	475.7483215332031	2	475.749147	949.483742	2.081	0.00099005	-3.1311	-0.0014896	-1.0501	-0.00049956	475.7474763022424	90.481	1.4829	90.481	90.228	91.711	0					75	36	3	0	0	0	0.74229	1	9752	9752		30.504	0	1	3215300	+		40183	18195	33156	33180	43564	43564					0.006979048677976607
NKMPSVEPL	9	Unmodified	_NKMPSVEPL_					0	0	0			REV__nc|ENSG00000113532|Q92187-2|ST8SIA4	REV__nc|ENSG00000113532|Q92187-2|ST8SIA4	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.8125305175781	2	507.76806	1013.52157	-0.54988	-0.00027921	-2.585	-0.0013126	-3.1349	-0.0015918	507.7665183236876	109.26	0.94699	108.11	107.82	108.77	-1.1444					31	17	2	0	0	0	0.027453	1	7811	7811		45.972	0	1	94020	+		40184	18154	33157	33181	43565	43565					0.015346943342706254
NKMQDLPLL	9	Unmodified	_NKMQDLPLL_					0	0	0		tr|A0A553SJQ9|A0A553SJQ9_NIACIAlpha/betahydrolaseOS=NialliacirculansOX=1397GN=CEQ21_17390PE=4SV=1	tr|A0A553SJQ9|A0A553SJQ9_NIACIAlpha/betahydrolaseOS=NialliacirculansOX=1397GN=CEQ21_17390PE=4SV=1	tr|A0A553SJQ9|A0A553SJQ9_NIACIAlpha/betahydrolaseOS=NialliacirculansOX=1397GN=CEQ21_17390PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.2945556640625	2	536.296985	1070.57942	0.00080185	4.3003E-07	1.586	0.00085057	1.5868	0.000851	536.297670212222	101.63	0.59587	101.63	101.36	101.95	0					35	13	4	0	0	0	0.16524	1	11302	11302		82.305	8.05	1	2159600			40185	33533	33158	33182	43566	43566					0.04694956259686478
NKMSKEELVQ	10	Unmodified	_NKMSKEELVQ_					0	0	0		tr|A0A553SSR8|A0A553SSR8_NIACIColicinimmunityprotein/pyocinimmunityproteinOS=NialliacirculansOX=1397GN=CEQ21_03575PE=4SV=1	tr|A0A553SSR8|A0A553SSR8_NIACIColicinimmunityprotein/pyocinimmunityproteinOS=NialliacirculansOX=1397GN=CEQ21_03575PE=4SV=1	tr|A0A553SSR8|A0A553SSR8_NIACIColicinimmunityprotein/pyocinimmunityproteinOS=NialliacirculansOX=1397GN=CEQ21_03575PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.928955078125	3	402.544667	1204.61217	0.80164	0.0003227	-1.8701	-0.0007528	-1.0684	-0.0004301	402.5438743885406	51.816	0.58261	51.816	51.544	52.127	0					17	13	2	0	0	0	0.026681	1	4024	4024		16.53	0	1	446890			40186	34408	33159	33183	43567	43567					0.01805118591869359
NKMWVVKP	8	Unmodified	_NKMWVVKP_					0	0	0			REV__ENSG00000086967|ENST00000357701|MYBPC2	REV__ENSG00000086967|ENST00000357701|MYBPC2	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.29095458984375	2	501.28368	1000.55281	-0.068239	-3.4207E-05	2.5013	0.0012539	2.4331	0.0012197	501.2848178386617	79.619	0.95992	77.279	77.053	78.013	-2.3399					50	18	3	0	0	0	0.028476	1	4311	4311		31.955	0	1	181760	+		40187	17153	33160	33184	43568	43568					0.052553121590108276
NKNEEVQQL	9	Unmodified	_NKNEEVQQL_					0	0	0		AKAP9-CDK14|2|fusion;AKAP9-CDK14|1|fusion;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9	AKAP9-CDK14|2|fusion	AKAP9-CDK14|2|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	551.2819213867188	2	551.280377	1100.5462	0.36891	0.00020338	1.571	0.00086604	1.9399	0.0010694	551.2810884233326	160.87	1.1036	160.87	160.21	161.31	0					39	21	3	0	0	0	0.34132	1	18847	18847		58.23	2.7257	1	221690			40188	58	33161	33185	43569	43569					-4.9542586793904775E-05
NKNELEAIL	9	Unmodified	_NKNELEAIL_					0	0	0			REV__nc|ENSG00000138101|O60941-4|DTNB;REV__nc|ENSG00000134769|Q9Y4J8-10|DTNA	REV__nc|ENSG00000134769|Q9Y4J8-10|DTNA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.74755859375	2	522.290214	1042.56587	-0.94725	-0.00049474	-1.4779	-0.00077187	-2.4251	-0.0012666	522.2896744169099	127.82	0.41754	126.38	126.19	126.6	-1.4357					12	7	2	0	0	0	0.027462	1	12181	12181		39.253	8.9351	1	14592	+		40189	19509;19232	33162	33186	43570	43570					0.04629421752088092
NKNGPFKP	8	Unmodified	_NKNGPFKP_					0	0	0		nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1;nc|ENSG00000158467|Q96HN2-4|AHCYL2;nc|ENSG00000158467|Q96HN2-3|AHCYL2;nc|ENSG00000158467|Q96HN2-2|AHCYL2;ENSG00000158467|ENST00000325006|AHCYL2;AHCYL1|p.L517I|1|0.15|ENSG00000168710|chr1:110020814-110020814|C/A|missense_variant	nc|ENSG00000168710|O43865-2|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.59918212890625	2	451.248152	900.481751	0.81455	0.00036757	1.4005	0.00063197	2.2151	0.00099954	451.24885129203403	75.753	0.48594	72.814	72.594	73.08	-2.9389					15	9	2	0	0	0	0.028476	1	5990	5990		38.806	9.6566	1	61960			40190	6935	33163	33187	43571	43571					0.027529354458465605
NKNGPFKP	8	Unmodified	_NKNGPFKP_					0	0	0		nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1;nc|ENSG00000158467|Q96HN2-4|AHCYL2;nc|ENSG00000158467|Q96HN2-3|AHCYL2;nc|ENSG00000158467|Q96HN2-2|AHCYL2;ENSG00000158467|ENST00000325006|AHCYL2;AHCYL1|p.L517I|1|0.15|ENSG00000168710|chr1:110020814-110020814|C/A|missense_variant	nc|ENSG00000168710|O43865-2|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	451.248152	900.481751	1.7619	0.00079505	1.1071	0.00049958	2.869	0.0012946	451.2485132961615	74.796	0.93491	72.825	72.219	73.154	-1.9711	0.0052821	-0.00018099	NaN	38.806	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17569			40191	6935	33163	33187							0.027529354458465605
NKNKEELIQ	9	Unmodified	_NKNKEELIQ_					0	0	0			REV__ENSG00000111860|ENST00000368491|CEP85L	REV__ENSG00000111860|ENST00000368491|CEP85L	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.2626342773438	2	558.306395	1114.59824	-0.6461	-0.00036072	3.0864	0.0017231	2.4403	0.0013624	558.3079810314173	65.815	0.86614	65.815	65.586	66.452	0					49	21	4	0	0	0	0.027457	1	6140	6140		56.434	12.317	1	4334300	+		40192	18066	33164	33188	43572	43572					0.04552209155099263
NKNKFVIAV	9	Unmodified	_NKNKFVIAV_					0	0	0		tr|A0A7D6ZFR4|A0A7D6ZFR4_9CLOTGlycosyltransferasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18960PE=4SV=1	tr|A0A7D6ZFR4|A0A7D6ZFR4_9CLOTGlycosyltransferasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18960PE=4SV=1	tr|A0A7D6ZFR4|A0A7D6ZFR4_9CLOTGlycosyltransferasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18960PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.815185546875	2	516.813659	1031.61277	2.0074	0.0010375	0.23385	0.00012086	2.2413	0.0011583	516.8136260533495	107.46	0.62969	107.46	107.14	107.77	0					36	14	4	0	0	0	0.34496	1	12120	12120		57.811	1.0902	1	2145500			40193	35520	33165	33189	43573	43573					0.09822326093899392
NKNKLAFSL	9	Unmodified	_NKNKLAFSL_					0	0	0			REV__tr|A0A553SFF3|A0A553SFF3_NIACIGlycosyltransferasefamily2proteinOS=NialliacirculansOX=1397GN=CEQ21_08770PE=3SV=1	REV__tr|A0A553SFF3|A0A553SFF3_NIACIGlycosyltransferasefamily2proteinOS=NialliacirculansOX=1397GN=CEQ21_08770PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.804443359375	2	517.803291	1033.59203	-0.79554	-0.00041194	0.29442	0.00015245	-0.50112	-0.00025948	517.8033999903365	69.26	1.6616	65.778	65.371	67.032	-3.4812					68	33	3	0	0	0	0.35444	1	5181	5181		56.721	5.3856	1	311700	+		40194	29572	33166	33190	43574	43574					0.07657735714224145
NKNKLGALI	9	Unmodified	_NKNKLGALI_					0	0	0		ENST00000433480.2_1_13:48876566-48877550:-|nuORF	ENST00000433480.2_1_13:48876566-48877550:-|nuORF	ENST00000433480.2_1_13:48876566-48877550:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.79290771484375	2	485.805834	969.597115	0.25658	0.00012465	0.048321	2.3475E-05	0.3049	0.00014812	485.80600196329465	73.847	0.3472	73.847	73.597	73.945	0					11	8	2	0	0	0	0.027462	1	7237	7237		24.203	1.1603	1	259970			40195	11833	33167	33191	43575	43575					0.11110039576851705
NKNLLKLI	8	Unmodified	_NKNLLKLI_					0	0	0			REV__tr|A0A7D6W2H2|A0A7D6W2H2_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06065PE=3SV=1	REV__tr|A0A7D6W2H2|A0A7D6W2H2_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06065PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.2912292480469	2	478.318577	954.622602	0.94686	0.0004529	-0.50973	-0.00024382	0.43712	0.00020908	478.3181054053438	67.039	0.39812	67.039	66.857	67.255	0					21	9	3	0	0	0	0.028476	1	6270	6270		40.573	7.057	1	934430	+		40196	31899	33168	33192	43576	43576					0.14347514099279124
NKNNKNKKK	9	Unmodified	_NKNNKNKKK_					0	0	0		tr|A0A7D6VRX2|A0A7D6VRX2_9CLOTLPXTGcellwallanchordomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20640PE=4SV=1	tr|A0A7D6VRX2|A0A7D6VRX2_9CLOTLPXTGcellwallanchordomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20640PE=4SV=1	tr|A0A7D6VRX2|A0A7D6VRX2_9CLOTLPXTGcellwallanchordomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20640PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.336181640625	2	558.335821	1114.65709	1.418	0.00079173	-1.51	-0.00084309	-0.091988	-5.136E-05	558.3348203882426	32.25	1.185	29.555	28.968	30.153	-2.6954					65	35	2	0	0	0	0.71696	1	726	726		12.207	0.69583	1	36609			40197	34962	33169	33193	43577	43577					0.1043473024008108
NKNNLISKVPR	11	Unmodified	_NKNNLISKVPR_					0	0	0		nc|ENSG00000132000|Q6PEZ8-2|PODNL1	nc|ENSG00000132000|Q6PEZ8-2|PODNL1	nc|ENSG00000132000|Q6PEZ8-2|PODNL1	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8790283203125	2	641.883136	1281.75172	-5.3554	-0.0034376	4.4876	0.0028805	-0.86781	-0.00055703	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.69081	1	13388	13388		32.812	10.233	1	804890			40198	15015	33170	33194	43578	43578					0.12211243991396259
NKNNNLLN	8	Unmodified	_NKNNNLLN_					0	0	0			REV__tr|A0A7D6VPV6|A0A7D6VPV6_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13125PE=4SV=1	REV__tr|A0A7D6VPV6|A0A7D6VPV6_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13125PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.8092346191406	2	472.251423	942.488293	1.5745	0.00074358	2.6901	0.0012704	4.2647	0.002014	472.2525119031909	68.248	1.3732	64.757	64.037	65.411	-3.4902					42	27	2	0	0	0	0.028476	1	5068	5068		40.573	2.7611	1	185290	+		40199	31281	33171	33195	43579	43579					0.014748286065696448
NKNRITDLE	9	Unmodified	_NKNRITDLE_					0	0	0		nc|ENSG00000148655|Q9H2I8|LRMDA;ENST00000593699.5_1_10:77643188-78317043:+|nuORF;ENSG00000148655|ENST00000611255|LRMDA	nc|ENSG00000148655|Q9H2I8|LRMDA	nc|ENSG00000148655|Q9H2I8|LRMDA	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.8276977539062	2	551.796195	1101.57784	-0.14642	-8.0795E-05	-1.9965	-0.0011017	-2.143	-0.0011825	551.7941694767107	60.865	0.46767	60.865	60.688	61.156	0					15	10	2	0	0	0	0.027462	1	5353	5353		40.778	0	1	279580			40200	5420	33172	33196	43580	43580					0.031110384952853565
NKNRKLVDV	9	Unmodified	_NKNRKLVDV_					0	0	0			REV__nc|ENSG00000168016|O15050|TRANK1	REV__nc|ENSG00000168016|O15050|TRANK1	MULTI-SECPEP	OvCa9_classI_Rep2	2	542.3716430664062	2	543.324922	1084.63529	0.40457	0.00021981	-1.9215	-0.001044	-1.5169	-0.00082416	543.3233925343427	41.63	0.64014	38.92	38.635	39.275	-2.7097					20	12	3	0	0	0	0.027462	1	2160	2160		35.618	0	1	18023	+		40201	21335	33173	33197	43581	43581					0.09635925491511443
NKNRKLVDV	9	Unmodified	_NKNRKLVDV_					0	0	0			REV__nc|ENSG00000168016|O15050|TRANK1	REV__nc|ENSG00000168016|O15050|TRANK1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	543.324922	1084.63529	-1.5033	-0.0008168	-0.23211	-0.00012611	-1.7354	-0.00094291	543.3238351534898	41.843	0.71886	38.863	38.593	39.312	-2.9804	-0.028445	0.0009387	NaN	44.117	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62490	+		40202	21335	33173	33197							0.09635925491511443
NKNSFLQSI	9	Unmodified	_NKNSFLQSI_					0	0	0		tr|A0A7D6VSZ1|A0A7D6VSZ1_9CLOTMembrane-associatedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05945PE=4SV=1	tr|A0A7D6VSZ1|A0A7D6VSZ1_9CLOTMembrane-associatedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05945PE=4SV=1	tr|A0A7D6VSZ1|A0A7D6VSZ1_9CLOTMembrane-associatedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05945PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.2745361328125	2	525.782556	1049.55056	-0.9519	-0.00050049	0.86296	0.00045373	-0.088946	-4.6766E-05	525.782806030744	94.353	1.9414	91.885	91.524	93.465	-2.4685					67	37	3	0	0	0	0.027353	1	8360	8360		52.937	0	1	215530			40203	35069	33174	33198	43582	43582					0.027765549549030766
NKNTIEKMF	9	Oxidation (M)	_NKNTIEKM(Oxidation (M))F_		NKNTIEKM(1)F		NKNTIEKM(58)F	0	0	1		tr|A0A7D6VQ00|A0A7D6VQ00_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13560PE=4SV=1	tr|A0A7D6VQ00|A0A7D6VQ00_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13560PE=4SV=1	tr|A0A7D6VQ00|A0A7D6VQ00_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13560PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	571.2921142578125	2	570.789524	1139.56449	0.83484	0.00047652	0.7101	0.00040531	1.5449	0.00088183	570.7894628952289	151.15	0.80769	151.15	150.84	151.65	0					41	15	4	0	0	0	0.34132	1	17686	17686		58.23	8.7884	1	254530			40204	34813	33175	33199	43583	43583		765			0.0002946439167317294
NKNTINILL	9	Unmodified	_NKNTINILL_					0	0	0		ENST00000423427.1_2_3:173114104-173322101:+|nuORF	ENST00000423427.1_2_3:173114104-173322101:+|nuORF	ENST00000423427.1_2_3:173114104-173322101:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	521.8153076171875	2	521.816399	1041.61824	0.45107	0.00023538	-0.20287	-0.00010586	0.2482	0.00012951	521.8161309836105	110.4	1.9235	110.23	109.86	111.78	-0.17237					90	38	4	0	0	0	0.28934	1	10402	10402		64.207	2.0999	1	440840			40205	11704	33176	33200	43584	43584					0.09910004885705348
NKNVRQKK	8	Unmodified	_NKNVRQKK_					0	0	0		tr|A0A553SF30|A0A553SF30_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_08135PE=4SV=1	tr|A0A553SF30|A0A553SF30_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_08135PE=4SV=1	tr|A0A553SF30|A0A553SF30_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_08135PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	507.81268310546875	2	507.811982	1013.60941	-0.47218	-0.00023978	2.4651	0.0012518	1.9929	0.001012	507.8132436809137	108.94	1.7138	107.74	107.32	109.03	-1.1978					102	32	5	0	0	0	0.61758	1	7788	7788		60.294	1.512	1	1384800			40206	32985	33177	33201	43585	43585					0.1031507603989894
NKPASPHI	8	Unmodified	_NKPASPHI_					0	0	0		nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5;ENST00000437205.5_1_3:183639090-183689734:-|nuORF	nc|ENSG00000114770|O15440-5|ABCC5	nc|ENSG00000114770|O15440-5|ABCC5	MULTI-SECPEP	OvCa99_classI_Rep5	1	431.8641662597656	2	432.240327	862.466101	0.030832	1.3327E-05	0.62444	0.00026991	0.65527	0.00028323	432.24035872626183	40.69	0.90089	40.69	40.294	41.195	0					29	19	3	0	0	0	0.028476	1	2509	2509		18.324	0	1	327880			40207	3040	33178	33202	43586	43586					0.02936648928800878
NKPDIKYII	9	Unmodified	_NKPDIKYII_					0	0	0			REV__tr|A0A553SMF5|A0A553SMF5_NIACIDUF3311domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22425PE=4SV=1	REV__tr|A0A553SMF5|A0A553SMF5_NIACIDUF3311domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22425PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	552.3289184570312	2	552.326599	1102.63865	2.7582	0.0015234	-0.56644	-0.00031286	2.1918	0.0012106	552.3260989498	116	0.64521	116	115.68	116.32	0					30	13	3	0	0	0	0.28934	1	13252	13252		64.207	0	1	660790	+		40208	30323	33179	33203	43587	43587					0.09143175545523263
NKPDIKYII	9	Unmodified	_NKPDIKYII_					0	0	0			REV__tr|A0A553SMF5|A0A553SMF5_NIACIDUF3311domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22425PE=4SV=1	REV__tr|A0A553SMF5|A0A553SMF5_NIACIDUF3311domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22425PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	552.326599	1102.63865	2.7582	0.0015234	-0.56644	-0.00031286	2.1918	0.0012106	552.3260989498	116	0.64521	116	115.68	116.32	0	-0.14776	-0.00022861	NaN	64.207	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	660790	+		40209	30323	33179	33203							0.09143175545523263
NKPDIKYII	9	Unmodified	_NKPDIKYII_					0	0	0			REV__tr|A0A553SMF5|A0A553SMF5_NIACIDUF3311domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22425PE=4SV=1	REV__tr|A0A553SMF5|A0A553SMF5_NIACIDUF3311domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22425PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	552.326599	1102.63865	-0.66955	-0.00036981	2.5783	0.0014241	1.9088	0.0010543	552.3258884782344	117.64	0.52526	116.29	116.1	116.63	-1.3444	0.14776	0.0032453	NaN	64.207	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19726	+		40210	30323	33179	33203							0.09143175545523263
NKPEEVQP	8	Unmodified	_NKPEEVQP_					0	0	0		ENSG00000164080|ENST00000684192|RAD54L2;ENST00000487093.5_1_3:51624427-51671126:+|nuORF	ENSG00000164080|ENST00000684192|RAD54L2	ENSG00000164080|ENST00000684192|RAD54L2	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.25701904296875	2	470.740357	939.46616	-0.045934	-2.1623E-05	-0.79306	-0.00037332	-0.83899	-0.00039495	470.7401938888062	65.207	0.79257	65.207	64.955	65.748	0					29	19	3	0	0	0	0.028476	1	5999	5999		27.882	0	1	921580			40211	6404	33180	33204	43588	43588					-0.005993958618546458
NKPEQAHLI	9	Unmodified	_NKPEQAHLI_					0	0	0			REV__L1PB4_dup1466|chr4:19614553-19617282:+|1.566952962030771|0.0066926762288261|7.87|427.0|13|1|sense	REV__L1PB4_dup1466|chr4:19614553-19617282:+|1.566952962030771|0.0066926762288261|7.87|427.0|13|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.2420654296875	2	525.290548	1048.56654	-1.4446	-0.00075885	2.5222	0.0013249	1.0776	0.00056606	525.2912657485297	66.319	0.48538	62.829	62.564	63.049	-3.4902					15	9	2	0	0	0	0.027455	1	4799	4799		42.396	0	1	36284	+		40212	28603	33181	33205	43589	43589					0.044202611917853574
NKPFIIILN	9	Unmodified	_NKPFIIILN_					0	0	0		tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1	tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1	tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.3306884765625	2	536.331685	1070.64882	2.1597	0.0011583	-4.0317	-0.0021623	-1.872	-0.001004	536.3293435689474	78.343	1.0738	78.343	77.757	78.83	0					62	25	5	0	0	0	0.091859	1	7955	7955		99.375	5.7774	1	6297600			40213	35041	33182	33206	43590	43590					0.116317832707864
NKPFIIILN	9	Unmodified	_NKPFIIILN_					0	0	0		tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1	tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1	tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	536.331685	1070.64882	-0.51236	-0.00027479	-3.9386	-0.0021124	-4.451	-0.0023872	536.3295093255713	80.234	1.1463	78.539	78.222	79.368	-1.6951	0.098342	0.00015695	NaN	99.375	36	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50340			40214	35041	33182	33206							0.116317832707864
NKPFIIILN	9	Unmodified	_NKPFIIILN_					0	0	0		tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1	tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1	tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	536.331685	1070.64882	0.95611	0.00051279	-6.0913	-0.003267	-5.1352	-0.0027542	536.3285559372505	80.634	0.772	78.311	78.03	78.802	-2.3226	-0.1291	-0.0021522	NaN	99.375	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65978			40215	35041	33182	33206							0.116317832707864
NKPFIIILN	9	Unmodified	_NKPFIIILN_					0	0	0		tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1	tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1	tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	536.331685	1070.64882	-1.6381	-0.00087856	-2.9685	-0.0015921	-4.6065	-0.0024706	536.3298110780596	81.279	1.127	78.569	77.954	79.081	-2.7106	0.12827	0.0011976	NaN	99.375	31	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67173			40216	35041	33182	33206							0.116317832707864
NKPIIGKNI	9	Unmodified	_NKPIIGKNI_					0	0	0		tr|A0A7D6W178|A0A7D6W178_9CLOTIsopropylmalatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02710PE=4SV=1	tr|A0A7D6W178|A0A7D6W178_9CLOTIsopropylmalatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02710PE=4SV=1	tr|A0A7D6W178|A0A7D6W178_9CLOTIsopropylmalatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02710PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.8136901855469	2	498.813659	995.612765	-1.804	-0.00089985	1.1667	0.00058198	-0.63725	-0.00031787	498.81412167064707	108.42	2.0013	106.69	106.42	108.42	-1.7256					88	38	3	0	0	0	0.55588	1	9911	9911		37.159	0	1	538280			40217	35402	33183	33207	43591	43591					0.114783260938907
NKPKSILLL	9	Unmodified	_NKPKSILLL_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.3401489257812	2	513.33951	1024.66447	2.6815	0.0013765	-2.5383	-0.001303	0.14319	7.3504E-05	513.3381393723276	135.21	0.89005	133.67	133.41	134.3	-1.5437					27	15	2	0	0	0	0.42676	1	13082	13082		49.442	7.0454	1	56302	+		40218	21063	33184	33208	43592	43592					0.15312069787819382
NKPKSILLL	9	Unmodified	_NKPKSILLL_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	513.33951	1024.66447	2.6815	0.0013765	-2.5383	-0.001303	0.14319	7.3504E-05	513.3381393723276	135.21	0.89005	133.67	133.41	134.3	-1.5437	0.16054	-0.001443	NaN	49.442	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56302	+		40219	21063	33184	33208							0.15312069787819382
NKPKYLQP	8	Unmodified	_NKPKYLQP_					0	0	0		L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|72|1|sense	L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|72|1|sense	L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|72|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.7519836425781	2	494.284734	986.554916	-1.2365	-0.00061117	-2.2065	-0.0010906	-3.443	-0.0017018	494.28329131496196	70.13	0.81735	70.13	69.552	70.369	0					28	19	3	0	0	0	0.028476	1	6695	6695		26.796	0	1	299520			40220	14700	33185	33209	43593	43593					0.0611006416845612
NKPLAIAKQ	9	Unmodified	_NKPLAIAKQ_					0	0	0		nc|ENSG00000162641|Q5T1N1-2|AKNAD1;nc|ENSG00000162641|Q5T1N1-3|AKNAD1;nc|ENSG00000162641|Q5T1N1-4|AKNAD1;ENSG00000162641|ENST00000370001|AKNAD1	nc|ENSG00000162641|Q5T1N1-2|AKNAD1	nc|ENSG00000162641|Q5T1N1-2|AKNAD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.77508544921875	2	491.805834	981.597115	-0.80559	-0.0003962	-0.36169	-0.00017788	-1.1673	-0.00057408	491.8055468249096	33.849	0.38462	33.849	33.681	34.065	0					14	7	3	0	0	0	0.027462	1	1613	1613		12.207	0	1	51133			40221	6209	33186	33210	43594	43594					0.10558039576847023
NKPMPKPYL	9	Unmodified	_NKPMPKPYL_					0	0	0			REV__nc|ENSG00000169570|Q8NBA8-2|DTWD2	REV__nc|ENSG00000169570|Q8NBA8-2|DTWD2	MULTI-MSMS	OvCa9_classI_Rep3	3	544.2999877929688	2	544.30207	1086.58959	-1.4048	-0.00076465	-2.9996	-0.0016327	-4.4044	-0.0023973	544.3002102005513	92.774	1.1692	90.813	90.56	91.729	-1.9617					64	23	4	0	0	0	0.25214	1	5904	5904		68.485	2.0554	1	877200	+		40222	21470	33187	33211	43595	43595					0.04975563984908149
NKPRLRLSS	9	Unmodified	_NKPRLRLSS_					0	0	0		nc|ENSG00000186648|Q8ND23-2|CARMIL3;ENST00000560349.1_1_14:24532322-24538610:+|nuORF;ENSG00000186648|ENST00000342740|CARMIL3	nc|ENSG00000186648|Q8ND23-2|CARMIL3	nc|ENSG00000186648|Q8ND23-2|CARMIL3	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.267578125	2	535.825089	1069.63563	-0.35142	-0.0001883	-0.10572	-5.6646E-05	-0.45714	-0.00024495	535.8249182901877	33.528	0.63855	33.528	33.186	33.824	0					26	12	3	0	0	0	0.027462	1	1540	1540		24.203	0	1	206820			40223	8353	33188	33212	43596	43596					0.10359345211372784
NKPVARRSAQS	11	Unmodified	_NKPVARRSAQS_					0	0	0			REV__ENST00000511184.5_1_4:140060622-140098172:-|nuORF	REV__ENST00000511184.5_1_4:140060622-140098172:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.5984802246094	3	405.230182	1212.66872	1.1072	0.00044867	-0.67515	-0.00027359	0.43204	0.00017508	405.22973883106494	30.211	0.39646	30.211	30.086	30.483	0					25	7	5	0	0	0	0.02595	1	1140	1140		7.6794	0	1	201910	+		40224	26955	33189	33213	43597	43597					0.0708892726340764
NKQENCILL	9	Carbamidomethyl (C)	_NKQENC(Carbamidomethyl (C))ILL_	NKQENC(1)ILL		NKQENC(90)ILL		0	1	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MSMS	OvCa9_classI_Rep3	3	566.2981567382812	2	566.294973	1130.57539	-1.1574	-0.00065545	4.398	0.0024906	3.2406	0.0018351	566.2974538113468	101.45	1.4662	99.844	99.395	100.86	-1.6053					55	27	3	0	0	0	0.12515	1	6941	6941		90.37	7.6193	1	319970			40225	8768	33190	33214	43598	43598	88				0.015328667659787243
NKQERLPN	8	Unmodified	_NKQERLPN_					0	0	0		ENSG00000166707|ENST00000650639|ZCCHC18	ENSG00000166707|ENST00000650639|ZCCHC18	ENSG00000166707|ENST00000650639|ZCCHC18	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.3147888183594	2	499.772522	997.530492	1.704	0.00085159	-0.79839	-0.00039901	0.90557	0.00045258	500.27300789398237	126.05	0.61076	126.05	125.85	126.46	0					16	12	2	0	0	0	0.028476	1	14581	14581		31.955	0	1	42780			40226	6702	33191	33215	43599	43599					0.03162804014937137
NKQGAPLTK	9	Unmodified	_NKQGAPLTK_					0	0	0			REV__PSD3|p.E207Dfs*37|1|0.07|ENSG00000156011|chr8:18872243-18872244|-/CAAGAAACCAACACTGCCTGCAGAG|frameshift_variant	REV__PSD3|p.E207Dfs*37|1|0.07|ENSG00000156011|chr8:18872243-18872244|-/CAAGAAACCAACACTGCCTGCAGAG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.8083801269531	2	478.779816	955.545079	1.0253	0.00049091	-1.4685	-0.00070307	-0.44311	-0.00021215	478.77919803916825	68.166	0.98009	64.675	64.381	65.362	-3.4902					27	19	2	0	0	0	0.027462	1	5116	5116		29.15	10.825	1	51231	+		40227	20457	33192	33216	43600	43600					0.06552876163073051
NKQGMPHER	9	Unmodified	_NKQGMPHER_					0	0	0			REV__L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|112|3|sense	REV__L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|112|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.8198852539062	2	548.769457	1095.52436	-0.94278	-0.00051737	4.1669	0.0022867	3.2241	0.0017693	548.7715286994313	66.143	1.1925	66.143	65.507	66.7	0					41	29	2	0	0	0	0.027462	1	6089	6089		19.997	5.1319	1	389480	+		40228	28596	33193	33217	43601	43601					-0.019580374882252727
NKQHLRPK	8	Unmodified	_NKQHLRPK_					0	0	0			REV__SVA_D_dup1417|chr21:8350923-8352925:-|16.64451059665088|0.0287746324772857|9.18|429.0|72|2|anti-sense	REV__SVA_D_dup1417|chr21:8350923-8352925:-|16.64451059665088|0.0287746324772857|9.18|429.0|72|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	510.25634765625	2	510.8067	1019.59885	-1.0915	-0.00055757	3.9279	0.0020064	2.8364	0.0014488	510.80876133633905	93.702	0.56145	91.74	91.577	92.138	-1.9617					16	10	2	0	0	0	0.028476	1	6008	6008		18.324	0	1	23520	+		40229	29476	33194	33218	43602	43602					0.08983093385461416
NKQHYKED	8	Unmodified	_NKQHYKED_					0	0	0		tr|A0A553SL01|A0A553SL01_NIACIPeptidemethioninesulfoxidereductaseMsrAOS=NialliacirculansOX=1397GN=msrAPE=3SV=1	tr|A0A553SL01|A0A553SL01_NIACIPeptidemethioninesulfoxidereductaseMsrAOS=NialliacirculansOX=1397GN=msrAPE=3SV=1	tr|A0A553SL01|A0A553SL01_NIACIPeptidemethioninesulfoxidereductaseMsrAOS=NialliacirculansOX=1397GN=msrAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.7997436523438	2	531.254163	1060.49377	2.5775	0.0013693	-1.5267	-0.00081104	1.0508	0.00055824	531.2534544414735	115.75	0.2812	115.75	115.58	115.86	0					7	5	2	0	0	0	0.028476	1	13223	13223		47.916	5.5195	1	39465			40230	33671	33195	33219	43603	43603					-0.034054926016324316
NKQKEQLEL	9	Unmodified	_NKQKEQLEL_					0	0	0			REV__nc|ENSG00000102387|Q5H9L4-3|TAF7L	REV__nc|ENSG00000102387|Q5H9L4-3|TAF7L	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.322509765625	2	565.31422	1128.61389	1.334	0.00075416	-0.55902	-0.00031602	0.77503	0.00043813	565.3143654450615	59.91	2.2145	56.48	55.964	58.178	-3.43					94	44	7	0	0	0	0.022645	1	4057	4057		143.89	3.9163	1	5926000	+		40231	17554	33196	33220	43604	43604					0.054724956721202034
NKQRQLLLL	9	Unmodified	_NKQRQLLLL_					0	0	0		ENST00000396253.7_1_11:18330607-18332343:-|nuORF	ENST00000396253.7_1_11:18330607-18332343:-|nuORF	ENST00000396253.7_1_11:18330607-18332343:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.359130859375	2	563.358765	1124.70298	0.70484	0.00039708	-1.1421	-0.00064342	-0.43727	-0.00024634	563.3579471531995	93.492	1.608	90.985	90.513	92.121	-2.5072					67	33	4	0	0	0	0.38529	1	8158	8158		53.351	2.016	1	219410			40232	11313	33197	33221	43605	43605					0.1456137542234046
NKQRQLLLL	9	Unmodified	_NKQRQLLLL_					0	0	0		ENST00000396253.7_1_11:18330607-18332343:-|nuORF	ENST00000396253.7_1_11:18330607-18332343:-|nuORF	ENST00000396253.7_1_11:18330607-18332343:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	563.358765	1124.70298	-1.6375	-0.00092252	0.64928	0.00036578	-0.98825	-0.00055674	563.3589935109688	92.811	1.4207	90.849	90.514	91.935	-1.9617	-0.067891	0.0014366	NaN	53.351	65	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	266020			40233	11313	33197	33221							0.1456137542234046
NKQYKLLSI	9	Unmodified	_NKQYKLLSI_					0	0	0			REV__ENST00000515764.2_1_4:25930809-25931061:+|nuORF	REV__ENST00000515764.2_1_4:25930809-25931061:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8300170898438	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.56889	1	14210	14210		35.618	0	1	245610	+		40234	27006	33198	33222	43606	43606					0.10094577919812764
NKRADINEK	9	Unmodified	_NKRADINEK_					0	0	0			REV__ENSG00000145491|ENST00000274134|ROPN1L	REV__ENSG00000145491|ENST00000274134|ROPN1L	MULTI-MSMS	OvCa99_classI_Rep5	1	544.2958374023438	2	544.296362	1086.57817	-0.4096	-0.00022294	-0.089255	-4.8581E-05	-0.49885	-0.00027152	544.2962177312693	48.771	0.66198	48.771	48.544	49.206	0					22	14	2	0	0	0	0.50149	1	3620	3620		42.396	3.1433	1	2265000	+		40235	19964	33199	33223	43607	43607					0.03834458215123959
NKRFVKKRFVI	11	Unmodified	_NKRFVKKRFVI_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.7831115722656	3	478.973384	1433.89832	-0.31103	-0.00014897	2.2388	0.0010723	1.9278	0.00092335	479.30858499162844	66.392	0.41166	66.392	66.25	66.661	0					13	9	2	0	0	0	0.026321	1	6174	6174		14.694	6.6593	1	137370	+		40236	21079	33200	33224	43608	43608					0.19872965947138255
NKRGVKLL	8	Unmodified	_NKRGVKLL_					0	0	0			REV__nc|ENSG00000112984|O95235-2|KIF20A;REV__KIF20A|p.A427Vfs*40|1|0.19|ENSG00000112984|chr5:138184032-138184033|-/TGTTC|frameshift_variant	REV__KIF20A|p.A427Vfs*40|1|0.19|ENSG00000112984|chr5:138184032-138184033|-/TGTTC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.27001953125	2	464.308544	926.602535	2.8689	0.001332	-0.66826	-0.00031028	2.2006	0.0010218	464.3081161452641	88.657	0.41589	88.657	88.467	88.883	0					15	9	2	0	0	0	0.028476	1	9422	9422		18.324	0	1	337110	+		40237	18131;28335	33201	33225	43609	43609					0.13629763159326558
NKRGWFDI	8	Unmodified	_NKRGWFDI_					0	0	0			REV__tr|A0A7D6VNM4|A0A7D6VNM4_9CLOTDinBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15930PE=4SV=1	REV__tr|A0A7D6VNM4|A0A7D6VNM4_9CLOTDinBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15930PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.8125610351562	2	518.272158	1034.52976	-0.23945	-0.0001241	1.2643	0.00065523	1.0248	0.00053113	518.272557047561	98.335	1.9447	95.956	95.47	97.414	-2.3786					62	37	3	0	0	0	0.028476	1	8825	8825		45.952	0	1	116360	+		40238	31193	33202	33226	43610	43610					0.013880093658826809
NKRKIIAF	8	Unmodified	_NKRKIIAF_					0	0	0		ENSG00000152291|ENST00000377386|TGOLN2;nc|ENSG00000152291|O43493-5|TGOLN2;nc|ENSG00000152291|O43493-3|TGOLN2;nc|ENSG00000152291|O43493-7|TGOLN2;nc|ENSG00000152291|O43493-6|TGOLN2;nc|ENSG00000152291|O43493-4|TGOLN2	ENSG00000152291|ENST00000377386|TGOLN2	ENSG00000152291|ENST00000377386|TGOLN2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.3134765625	2	495.316369	988.618185	-0.74959	-0.00037128	0.4549	0.00022532	-0.29469	-0.00014596	495.3164425620654	95.005	1.6601	92.536	92.21	93.87	-2.4685					56	32	2	0	0	0	0.028476	1	8340	8340		13.775	0.81615	1	125140			40239	5616	33203	33227	43611	43611					0.12342049676362876
NKRKIIAF	8	Unmodified	_NKRKIIAF_					0	0	0		ENSG00000152291|ENST00000377386|TGOLN2;nc|ENSG00000152291|O43493-5|TGOLN2;nc|ENSG00000152291|O43493-3|TGOLN2;nc|ENSG00000152291|O43493-7|TGOLN2;nc|ENSG00000152291|O43493-6|TGOLN2;nc|ENSG00000152291|O43493-4|TGOLN2	ENSG00000152291|ENST00000377386|TGOLN2	ENSG00000152291|ENST00000377386|TGOLN2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	495.316369	988.618185	-0.83792	-0.00041504	0.61372	0.00030399	-0.2242	-0.00011105	495.3165366490739	94.33	1.8109	92.435	92.052	93.863	-1.8956	-0.050601	8.9533E-05	NaN	3.9852	64	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136140			40240	5616	33203	33227							0.12342049676362876
NKRKKKLYQRF	11	Unmodified	_NKRKKKLYQRF_					0	0	0			REV__tr|A0A7D6VX14|A0A7D6VX14_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06395PE=4SV=1	REV__tr|A0A7D6VX14|A0A7D6VX14_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06395PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.82373046875	3	503.643927	1507.90995	0.43823	0.00022071	-2.9756	-0.0014986	-2.5373	-0.0012779	503.6424022235036	35.595	0.49874	32.746	32.441	32.94	-2.849					15	9	2	0	0	0	0.026488	1	1169	1169		3.4087	0	1	9470.8	+		40241	31761	33204	33228	43612	43612					0.17631162970496916
NKRKYVNP	8	Unmodified	_NKRKYVNP_					0	0	0			REV__ENST00000591330.5_1_17:40855746-40879722:-|nuORF	REV__ENST00000591330.5_1_17:40855746-40879722:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.8033142089844	2	509.793258	1017.57196	0.11611	5.9191E-05	-1.1681	-0.00059549	-1.052	-0.0005363	509.7925057120696	60.095	1.2363	56.665	56.358	57.594	-3.43					62	24	3	0	0	0	0.028476	1	4100	4100		30.504	14.03	1	337010	+		40242	17903	33205	33229	43613	43613					0.06387984774266897
NKRLDDTV	8	Unmodified	_NKRLDDTV_					0	0	0			REV__ENST00000566279.5_1_18:53254319-53255766:-|nuORF	REV__ENST00000566279.5_1_18:53254319-53255766:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.806640625	2	480.759081	959.503609	-0.46527	-0.00022368	-0.93419	-0.00044912	-1.3995	-0.0006728	480.7586020198964	55.947	0.80935	52.653	52.361	53.171	-3.2944					22	15	2	0	0	0	0.028476	1	3604	3604		42.474	0	1	79682	+		40243	27672	33206	33230	43614	43614					0.022236954037566647
NKRMEGVRAE	10	Unmodified	_NKRMEGVRAE_					0	0	0		tr|A0A553SMB3|A0A553SMB3_NIACILacIfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22220PE=4SV=1	tr|A0A553SMB3|A0A553SMB3_NIACILacIfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22220PE=4SV=1	tr|A0A553SMB3|A0A553SMB3_NIACILacIfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22220PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.7676391601562	2	595.308946	1188.60334	1.8493	0.0011009	3.4455	0.0020512	5.2949	0.0031521	595.3108111655653	127.85	0.50841	127.85	127.63	128.14	0					15	10	2	0	0	0	0.027001	1	14778	14778		28.081	13.944	1	50493			40244	33821	33207	33231	43615	43615					0.016581897460582695
NKRNISKN	8	Unmodified	_NKRNISKN_					0	0	0		ENSG00000203952|ENST00000695460|CCDC160	ENSG00000203952|ENST00000695460|CCDC160	ENSG00000203952|ENST00000695460|CCDC160	MULTI-MSMS	OvCa9_classI_Rep3	3	487.2823181152344	2	487.280515	972.546476	-0.97508	-0.00047514	2.7384	0.0013344	1.7633	0.00085922	487.28188680194495	97.554	2.9535	95.794	95.362	98.316	-1.7595					206	57	6	0	0	0	0.64026	1	6559	6559		55.504	0.72789	1	11571000			40245	8941	33208	33232	43616	43616					0.05910510251840151
NKRPKTEG	8	Unmodified	_NKRPKTEG_					0	0	0			REV__ENSG00000181690|ENST00000316981|PLAG1	REV__ENSG00000181690|ENST00000316981|PLAG1	MULTI-SECPEP	OvCa9_classI_Rep2	2	466.23663330078125	2	465.261791	928.509028	0.38326	0.00017831	3.8379	0.0017856	4.2212	0.001964	465.2633427567133	43.745	1.2431	41.035	40.559	41.802	-2.7097					41	24	3	0	0	0	0.028476	1	2461	2461		57.811	9.8957	1	67069	+		40246	22244	33209	33233	43617	43617					0.041914189862382045
NKRVGIDI	8	Unmodified	_NKRVGIDI_					0	0	0		tr|A0A7D6VQN7|A0A7D6VQN7_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21950PE=4SV=1	tr|A0A7D6VQN7|A0A7D6VQN7_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21950PE=4SV=1	tr|A0A7D6VQN7|A0A7D6VQN7_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21950PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.893310546875	2	457.774534	913.534515	-0.38765	-0.00017746	0.5843	0.00026748	0.19666	9.0024E-05	457.77463449893577	52.189	0.69988	52.189	51.953	52.653	0					29	15	3	0	0	0	0.028476	1	4135	4135		12.959	0	1	1073300			40247	34862	33210	33234	43618	43618					0.07428893508676992
NKRVMGLFY	9	Unmodified	_NKRVMGLFY_					0	0	0		ENST00000457361.5_1_2:214016140-214016329:-|nuORF	ENST00000457361.5_1_2:214016140-214016329:-|nuORF	ENST00000457361.5_1_2:214016140-214016329:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	564.3079223632812	2	564.305144	1126.59573	1.0995	0.00062047	0.70321	0.00039683	1.8027	0.0010173	564.3042933701876	122.34	1.2059	121.31	120.8	122	-1.0286					61	22	5	0	0	0	0.25214	4	9388	9371;9382;9388;9400		68.485	19.886	1	515080			40248	12123	33211	33235	43619;43620;43621;43622	43621					0.03750082216447481
NKRVSRRF	8	Unmodified	_NKRVSRRF_					0	0	0			REV__HNF4A|p.Q327Hfs*25|1|0.8|ENSG00000101076|chr20:44424106-44424106|G/-|frameshift_variant	REV__HNF4A|p.Q327Hfs*25|1|0.8|ENSG00000101076|chr20:44424106-44424106|G/-|frameshift_variant	MSMS	OvCa9_classI_Rep4_	4	531.8178100585938	2	531.817599	1061.62064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.82	1	135.28	134.78	135.78	-1.5437								0	0	0	0.30129	1	13283	13283		38.806	0	1		+		40249	17470	33212	33236	43623	43623					0.09229898134049108
NKRVVSWL	8	Unmodified	_NKRVVSWL_					0	0	0			REV__KIF20A|p.G32W|1|0.06|ENSG00000112984|chr5:138179774-138179774|G/T|missense_variant	REV__KIF20A|p.G32W|1|0.06|ENSG00000112984|chr5:138179774-138179774|G/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	502.2818908691406	2	501.298176	1000.5818	-0.72808	-0.00036498	4.3984	0.0022049	3.6703	0.0018399	501.2995946632441	93.849	0.98288	92.749	92.329	93.312	-1.0995					27	18	2	0	0	0	0.028476	1	8417	8417		33.516	9.3128	1	19188	+		40250	28336	33213	33237	43624	43624					0.08153172779668694
NKSDYCNLP	9	Unmodified	_NKSDYCNLP_					0	0	0		ENSG00000177103|ENST00000651296|DSCAML1;nc|ENSG00000177103|Q8TD84-2|DSCAML1	ENSG00000177103|ENST00000651296|DSCAML1	ENSG00000177103|ENST00000651296|DSCAML1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.7808227539062	2	527.237124	1052.45969	-0.90198	-0.00047556	0.76499	0.00040333	-0.13699	-7.2228E-05	527.2373862673571	50.463	0.83416	50.463	50.073	50.907	0					44	18	3	0	0	0	0.027462	1	3892	3892		30.504	2.6214	1	744780			40251	7658	33214	33238	43625	43625					-0.06443657084878396
NKSFARLVC	9	Unmodified	_NKSFARLVC_					0	0	0			REV__ENSG00000122033|ENST00000381120|MTIF3	REV__ENSG00000122033|ENST00000381120|MTIF3	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.8248901367188	2	519.281669	1036.54878	0.83327	0.0004327	-2.8327	-0.001471	-1.9994	-0.0010383	519.2799223732267	143.59	0.74252	143.59	143.22	143.96	0					19	14	2	0	0	0	0.027462	1	16815	16815		37.159	5.6293	1	41173	+		40252	18574	33215	33239	43626	43626					0.03197222665312438
NKSGAYMS	8	Unmodified	_NKSGAYMS_					0	0	0			REV__FRMPD2|p.H754Y|1|0.24|ENSG00000170324|chr10:48187198-48187198|G/A|missense_variant	REV__FRMPD2|p.H754Y|1|0.24|ENSG00000170324|chr10:48187198-48187198|G/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	429.2594299316406	2	429.194728	856.374903	0.16495	7.0795E-05	-4.0043	-0.0017186	-3.8394	-0.0016479	429.1929008005286	63.042	0.95939	59.567	59.291	60.251	-3.475					32	19	2	0	0	0	0.028476	1	4450	4450		31.955	12.595	1	59526	+		40253	28144	33216	33240	43627	43627					-0.059029828308325705
NKSKGIQSIL	10	Unmodified	_NKSKGIQSIL_					0	0	0		nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8125	2	544.327131	1086.63971	1.9364	0.0010541	-3.8109	-0.0020744	-1.8744	-0.0010203	544.324878271656	134.05	0.52206	134.05	133.82	134.34	0					15	10	2	0	0	0	0.026714	1	15615	15615		35.152	0	1	70615			40254	2599	33217	33241	43628	43628					0.09985389914436382
NKSKQRKR	8	Unmodified	_NKSKQRKR_					0	0	0			REV__ENSG00000163637|ENST00000638394|PRICKLE2	REV__ENSG00000163637|ENST00000638394|PRICKLE2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.26904296875	2	522.822881	1043.63121	-0.23479	-0.00012275	3.5827	0.0018731	3.3479	0.0017504	522.8250663690392	112.49	0.30313	110.98	110.84	111.15	-1.5111					7	5	2	0	0	0	0.028476	1	10386	10386		17.365	1.7232	1	17744	+		40255	20866	33218	33242	43629	43629					0.11113880788457209
NKSKQRKR	8	Unmodified	_NKSKQRKR_					0	0	0			REV__ENSG00000163637|ENST00000638394|PRICKLE2	REV__ENSG00000163637|ENST00000638394|PRICKLE2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	522.822881	1043.63121	1.7134	0.0008958	1.1695	0.00061142	2.8829	0.0015072	522.8228011280279	112.11	0.29535	111.01	110.84	111.14	-1.1038	0.015011	-0.00088693	NaN	17.365	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9574.8	+		40256	20866	33218	33242							0.11113880788457209
NKSKSATT	8	Unmodified	_NKSKSATT_					0	0	0		ENST00000489327.1_1_2:69705990-69736406:-|nuORF;nc|ENSG00000115977|Q2M2I8-2|AAK1;ENSG00000115977|ENST00000409085|AAK1	ENST00000489327.1_1_2:69705990-69736406:-|nuORF	ENST00000489327.1_1_2:69705990-69736406:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	418.9271240234375	2	418.727249	835.439946	-0.86791	-0.00036342	-0.95056	-0.00039803	-1.8185	-0.00076144	418.72677787476624	103.97	0.57709	101.85	101.64	102.22	-2.1192					17	10	2	0	0	0	0.028476	1	9410	9410		17.365	0	1	16192			40257	3145	33219	33243	43630	43630					0.01564334966667502
NKSLLAKPLP	10	Unmodified	_NKSLLAKPLP_					0	0	0			REV__ENST00000564171.1_1_16:2026070-2027324:+|nuORF	REV__ENST00000564171.1_1_16:2026070-2027324:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	540.8407592773438	2	540.842416	1079.67028	-0.50813	-0.00027482	-2.1391	-0.0011569	-2.6473	-0.0014318	540.8411675935439	31.395	0.98717	28.685	28.494	29.481	-2.7097					43	19	3	0	0	0	0.78463	1	963	963		20.947	1.8434	1	162100	+		40258	22382	33220	33244	43631	43631					0.13363168299474637
NKSMMFRP	8	Unmodified	_NKSMMFRP_					0	0	0			REV__nc|ENSG00000169891|Q8NFH8-4|REPS2	REV__nc|ENSG00000169891|Q8NFH8-4|REPS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.78570556640625	2	505.749147	1009.48374	0.046359	2.3446E-05	-0.73704	-0.00037276	-0.69068	-0.00034931	505.74872806835924	46.62	0.52531	46.62	46.369	46.894	0					18	11	3	0	0	0	0.028476	1	3294	3294		31.955	7.7521	1	197320	+		40259	21492	33221	33245	43632	43632					-0.020620951321916436
NKSNLIGKL	9	Unmodified	_NKSNLIGKL_					0	0	0		tr|A0A7D6VS23|A0A7D6VS23_9CLOTRNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21180PE=4SV=1	tr|A0A7D6VS23|A0A7D6VS23_9CLOTRNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21180PE=4SV=1	tr|A0A7D6VS23|A0A7D6VS23_9CLOTRNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21180PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.81890869140625	2	493.803291	985.59203	-1.4102	-0.00069638	1.7432	0.0008608	0.33298	0.00016443	493.8039521389345	62.584	1.0841	59.84	59.449	60.533	-2.7444					36	20	2	0	0	0	0.027462	1	4656	4656		35.618	8.9254	1	32307			40260	34978	33222	33246	43633	43633					0.09865735714254242
NKSNLIGKL	9	Unmodified	_NKSNLIGKL_					0	0	0		tr|A0A7D6VS23|A0A7D6VS23_9CLOTRNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21180PE=4SV=1	tr|A0A7D6VS23|A0A7D6VS23_9CLOTRNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21180PE=4SV=1	tr|A0A7D6VS23|A0A7D6VS23_9CLOTRNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21180PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	493.803291	985.59203	-0.19767	-9.7612E-05	0.2527	0.00012478	0.055022	2.717E-05	493.8032113712305	63.511	0.67111	60.036	59.868	60.539	-3.475	0.098311	-0.0010535	NaN	35.618	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66883			40261	34978	33222	33246							0.09865735714254242
NKSPGAKLE	9	Unmodified	_NKSPGAKLE_					0	0	0			REV__ENSG00000143970|ENST00000435504|ASXL2	REV__ENSG00000143970|ENST00000435504|ASXL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.7900695800781	2	472.263999	942.513445	-0.46253	-0.00021844	0.55019	0.00025983	0.087654	4.1396E-05	472.26415532909704	50.598	0.67058	47.424	47.1	47.771	-3.1734					19	12	2	0	0	0	0.027446	1	2943	2943		51.193	15.992	1	55169	+		40262	19880	33223	33247	43634	43634					0.039888834091470926
NKSPVKPIV	9	Unmodified	_NKSPVKPIV_					0	0	0			REV__nc|ENSG00000009307|O75534-2|CSDE1	REV__nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	OvCa99_classI_Rep5	1	491.3094787597656	2	491.30821	980.601866	2.1256	0.0010443	0.064619	3.1748E-05	2.1902	0.0010761	491.3080724187183	95.878	0.6732	95.878	95.495	96.168	0					30	15	3	0	0	0	0.42676	1	10484	10484		49.442	1.5259	1	852290	+		40263	16463	33224	33248	43635	43635					0.11078923719605882
NKSRDLANG	9	Unmodified	_NKSRDLANG_					0	0	0		nc|ENSG00000235865|Q9NRJ2|GSN-AS1	nc|ENSG00000235865|Q9NRJ2|GSN-AS1	nc|ENSG00000235865|Q9NRJ2|GSN-AS1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.28265380859375	2	487.75433	973.494107	-1.0866	-0.00053	-1.478	-0.0007209	-2.5646	-0.0012509	487.75203996806937	95.737	0.35262	93.311	93.105	93.457	-2.4256					9	6	2	0	0	0	0.027455	1	8420	8420		42.396	9.5837	1	12790			40264	15333	33225	33249	43636	43636					0.006299271182342636
NKTDVVLIL	9	Unmodified	_NKTDVVLIL_					0	0	0		ENSG00000167657|ENST00000545797|DAPK3;nc|ENSG00000167657|O43293-2|DAPK3	ENSG00000167657|ENST00000545797|DAPK3	ENSG00000167657|ENST00000545797|DAPK3	MULTI-MSMS	OvCa9_classI_Rep2	2	507.81353759765625	2	507.813325	1013.6121	-0.12107	-6.1481E-05	-0.4963	-0.00025203	-0.61737	-0.00031351	507.81301768077884	108.09	2.3576	107.86	106.9	109.26	-0.22498					116	47	4	0	0	0	0.13482	1	10120	10120		87.754	22.289	1	960970			40265	6825	33226	33250	43637	43637					0.10583486654206808
NKTDVVLIL	9	Unmodified	_NKTDVVLIL_					0	0	0		ENSG00000167657|ENST00000545797|DAPK3;nc|ENSG00000167657|O43293-2|DAPK3	ENSG00000167657|ENST00000545797|DAPK3	ENSG00000167657|ENST00000545797|DAPK3	MULTI-MSMS	OvCa9_classI_Rep3	3	507.812744140625	2	507.813325	1013.6121	-0.47218	-0.00023978	-0.17891	-9.0854E-05	-0.65109	-0.00033063	507.8132436809137	108.94	1.7138	107.74	107.32	109.03	-1.1978					102	32	5	0	0	0	0.068524	3	7799	7793;7799;7805		108.09	28.375	1	1384800			40266	6825	33226	33250	43638;43639;43640	43639					0.10583486654206808
NKTDVVLIL	9	Unmodified	_NKTDVVLIL_					0	0	0		ENSG00000167657|ENST00000545797|DAPK3;nc|ENSG00000167657|O43293-2|DAPK3	ENSG00000167657|ENST00000545797|DAPK3	ENSG00000167657|ENST00000545797|DAPK3	MSMS	OvCa9_classI_Rep4_	4	507.8136291503906	2	507.813325	1013.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.45	1	107.72	107.22	108.22	-1.7256								0	0	0	0.058381	1	10046	10046		76.774	7.1465	1				40267	6825	33226	33250	43641	43641					0.10583486654206808
NKTGQLLEV	9	Unmodified	_NKTGQLLEV_					0	0	0			REV__BICC1|p.S698Qfs*2|1|0.07|ENSG00000122870|chr10:58803152-58803153|-/C|frameshift_variant	REV__BICC1|p.S698Qfs*2|1|0.07|ENSG00000122870|chr10:58803152-58803153|-/C|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	502.27435302734375	2	501.284931	1000.55531	-0.24997	-0.0001253	0.91329	0.00045782	0.66333	0.00033252	501.28520962203265	79.445	1.2231	77.705	76.807	78.03	-1.7398					49	23	3	0	0	0	0.02744	1	6582	6582		44.377	3.599	1	85671	+		40268	15700	33227	33251	43642	43642					0.05505439097669296
NKTITLNPL	9	Unmodified	_NKTITLNPL_					0	0	0		tr|A0A7D6ZZW1|A0A7D6ZZW1_9CLOTIg-likedomainrepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07825PE=4SV=1	tr|A0A7D6ZZW1|A0A7D6ZZW1_9CLOTIg-likedomainrepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07825PE=4SV=1	tr|A0A7D6ZZW1|A0A7D6ZZW1_9CLOTIg-likedomainrepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07825PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.2794494628906	2	507.303124	1012.5917	-1.2967	-0.00065783	1.0892	0.00055257	-0.20751	-0.00010527	507.3034828669847	77.647	0.92047	75.294	74.577	75.497	-2.3527					20	17	2	0	0	0	0.027462	1	3998	3998		35.618	2.8059	1	35579			40269	35975	33228	33252	43643	43643					0.08590315994376851
NKTKLLPSI	9	Unmodified	_NKTKLLPSI_					0	0	0		KDM6A|p.F953Sfs*25|1|0.5|ENSG00000147050|chrX:45078424-45078425|TT/-|frameshift_variant;KDM6A|p.R1054Efs*29|1|0.43|ENSG00000147050|chrX:45082586-45082586|A/-|frameshift_variant;nc|ENSG00000183878|O14607-5|UTY;nc|ENSG00000183878|O14607-4|UTY;nc|ENSG00000147050|O15550|KDM6A;ENSG00000183878|ENST00000545955|UTY;ENSG00000147050|ENST00000611820|KDM6A	KDM6A|p.F953Sfs*25|1|0.5|ENSG00000147050|chrX:45078424-45078425|TT/-|frameshift_variant	KDM6A|p.F953Sfs*25|1|0.5|ENSG00000147050|chrX:45078424-45078425|TT/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.8126220703125	2	507.321317	1012.62808	-3.6696	-0.0018616	3.6014	0.0018271	-0.068176	-3.4587E-05	507.3231527626932	152.02	0.70226	150.58	150.29	150.99	-1.4351					19	14	2	0	0	0	0.027462	1	15064	15064		10.866	0	1	18655			40270	5325	33229	33253	43644	43644					0.12227192891100458
NKTKLLPSI	9	Unmodified	_NKTKLLPSI_					0	0	0		KDM6A|p.F953Sfs*25|1|0.5|ENSG00000147050|chrX:45078424-45078425|TT/-|frameshift_variant;KDM6A|p.R1054Efs*29|1|0.43|ENSG00000147050|chrX:45082586-45082586|A/-|frameshift_variant;nc|ENSG00000183878|O14607-5|UTY;nc|ENSG00000183878|O14607-4|UTY;nc|ENSG00000147050|O15550|KDM6A;ENSG00000183878|ENST00000545955|UTY;ENSG00000147050|ENST00000611820|KDM6A	KDM6A|p.F953Sfs*25|1|0.5|ENSG00000147050|chrX:45078424-45078425|TT/-|frameshift_variant	KDM6A|p.F953Sfs*25|1|0.5|ENSG00000147050|chrX:45078424-45078425|TT/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	507.321317	1012.62808	-3.5322	-0.001792	3.3067	0.0016776	-0.22551	-0.00011441	507.32297606714934	150.72	0.67027	150.49	150.22	150.89	-0.22697	-0.027104	-0.00065482	NaN	10.866	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14783			40271	5325	33229	33253							0.12227192891100458
NKTKLLPSI	9	Unmodified	_NKTKLLPSI_					0	0	0		KDM6A|p.F953Sfs*25|1|0.5|ENSG00000147050|chrX:45078424-45078425|TT/-|frameshift_variant;KDM6A|p.R1054Efs*29|1|0.43|ENSG00000147050|chrX:45082586-45082586|A/-|frameshift_variant;nc|ENSG00000183878|O14607-5|UTY;nc|ENSG00000183878|O14607-4|UTY;nc|ENSG00000147050|O15550|KDM6A;ENSG00000183878|ENST00000545955|UTY;ENSG00000147050|ENST00000611820|KDM6A	KDM6A|p.F953Sfs*25|1|0.5|ENSG00000147050|chrX:45078424-45078425|TT/-|frameshift_variant	KDM6A|p.F953Sfs*25|1|0.5|ENSG00000147050|chrX:45078424-45078425|TT/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	507.321317	1012.62808	-5.2019	-0.002639	4.9733	0.0025231	-0.22864	-0.00011599	507.3238888665079	151.44	0.5515	150.48	150.26	150.81	-0.95647	-0.037646	0.0010361	NaN	10.866	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20411			40272	5325	33229	33253							0.12227192891100458
NKTLSTIPIW	10	Unmodified	_NKTLSTIPIW_					0	0	0			REV__LRRIQ1|p.E1195Kfs*10|1|0.44|ENSG00000133640|chr12:85124094-85124094|A/-|frameshift_variant	REV__LRRIQ1|p.E1195Kfs*10|1|0.44|ENSG00000133640|chr12:85124094-85124094|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	586.814697265625	2	586.837331	1171.66011	-1.4776	-0.00086713	-2.9389	-0.0017247	-4.4166	-0.0025918	586.8356539600403	44.715	0.61311	41.676	41.514	42.127	-3.0385					17	11	2	0	0	0	0.027118	1	2249	2249		13.454	5.219	1	41000	+		40273	19151	33230	33254	43645	43645					0.08114560574244933
NKTLSTIPIW	10	Unmodified	_NKTLSTIPIW_					0	0	0			REV__LRRIQ1|p.E1195Kfs*10|1|0.44|ENSG00000133640|chr12:85124094-85124094|A/-|frameshift_variant	REV__LRRIQ1|p.E1195Kfs*10|1|0.44|ENSG00000133640|chr12:85124094-85124094|A/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	586.837331	1171.66011	-0.01854	-1.088E-05	-4.9589	-0.0029101	-4.9774	-0.0029209	586.8343281561048	44.448	0.39854	41.738	41.552	41.951	-2.7097	0.031018	-0.0016294	NaN	8.6937	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15029	+		40274	19151	33230	33254							0.08114560574244933
NKTNLDDLV	9	Unmodified	_NKTNLDDLV_					0	0	0		EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant;nc|ENSG00000110723|Q8NEV8-2|EXPH5;ENSG00000110723|ENST00000265843|EXPH5	EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant	EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	516.2730712890625	2	516.272021	1030.52949	0.78686	0.00040624	-0.93588	-0.00048317	-0.14902	-7.6932E-05	516.2714783528818	79.368	1.2589	77.029	76.754	78.013	-2.3399					69	24	4	0	0	0	0.22621	1	4285	4285		71.877	4.3838	1	908090			40275	2792	33231	33255	43646	43646					0.015445448553691676
NKTNVIVDI	9	Unmodified	_NKTNVIVDI_					0	0	0			REV__ENST00000540429.1_1_12:26646977-26648169:-|nuORF	REV__ENST00000540429.1_1_12:26646977-26648169:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.81353759765625	2	508.292756	1014.57096	-0.083139	-4.2259E-05	-0.6767	-0.00034396	-0.75984	-0.00038622	508.292055167843	96.265	0.54762	95.237	94.863	95.411	-1.0281					15	10	2	0	0	0	0.027026	1	8697	8697		75.043	0	1	39687	+		40276	18624	33232	33256	43647	43647					0.06425725614690236
NKTPFIQL	8	Unmodified	_NKTPFIQL_					0	0	0			REV__NUP214|p.A1512Sfs*24|1|0.04|ENSG00000126883|chr9:131198026-131198027|-/T|frameshift_variant	REV__NUP214|p.A1512Sfs*24|1|0.04|ENSG00000126883|chr9:131198026-131198027|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.7689208984375	2	480.779285	959.544017	0.17286	8.3107E-05	-3.448	-0.0016577	-3.2751	-0.0015746	480.77739730256707	56.918	0.20269	53.574	53.425	53.628	-3.3449					5	3	2	0	0	0	0.028476	1	3664	3664		53.351	14.545	1	8614.7	+		40277	18801	33233	33257	43648	43648					0.06262661794187352
NKTQTILFY	9	Unmodified	_NKTQTILFY_					0	0	0		nc|ENSG00000166634|Q96P63|SERPINB12;ENSG00000166634|ENST00000382768|SERPINB12	nc|ENSG00000166634|Q96P63|SERPINB12	nc|ENSG00000166634|Q96P63|SERPINB12	MULTI-MSMS	OvCa9_classI_Rep2	2	564.308349609375	2	564.308406	1126.60226	-0.64094	-0.00036169	0.38666	0.0002182	-0.25427	-0.00014349	564.3086346308005	121.22	1.0377	121.03	120.61	121.64	-0.19718					60	20	5	0	0	0	0.16524	3	11704	11698;11704;11716		82.305	18.999	1	328140			40278	6699	33234	33258	43649;43650;43651	43650					0.04402298648801661
NKTRIIYF	8	Unmodified	_NKTRIIYF_					0	0	0		ENSG00000054803|ENST00000064571|CBLN4	ENSG00000054803|ENST00000064571|CBLN4	ENSG00000054803|ENST00000064571|CBLN4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.7868041992188	2	527.805834	1053.59712	-1.4663	-0.00077394	-4.3552	-0.0022987	-5.8215	-0.0030726	527.8036449580449	69.639	1.1223	66.158	65.811	66.934	-3.4812					32	22	2	0	0	0	0.028476	1	5224	5224		38.806	12.01	1	141290			40279	1215	33235	33259	43652	43652					0.07246039576853036
NKTRIIYF	8	Unmodified	_NKTRIIYF_					0	0	0		ENSG00000054803|ENST00000064571|CBLN4	ENSG00000054803|ENST00000064571|CBLN4	ENSG00000054803|ENST00000064571|CBLN4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	527.805834	1053.59712	-1.2908	-0.00068128	-5.5839	-0.0029472	-6.8746	-0.0036285	527.8029494174272	68.686	1.2879	66.066	65.327	66.615	-2.6203	0.071736	-0.0027829	NaN	38.806	49	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40231			40280	1215	33235	33259							0.07246039576853036
NKTRIIYF	8	Unmodified	_NKTRIIYF_					0	0	0		ENSG00000054803|ENST00000064571|CBLN4	ENSG00000054803|ENST00000064571|CBLN4	ENSG00000054803|ENST00000064571|CBLN4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	527.805834	1053.59712	0.30529	0.00016114	-0.36148	-0.00019079	-0.056189	-2.9657E-05	527.8053945992424	68.572	0.50122	65.758	65.611	66.112	-2.8143	-0.23608	0.0027299	NaN	38.806	10	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13443			40281	1215	33235	33259							0.07246039576853036
NKTSPVYW	8	Unmodified	_NKTSPVYW_					0	0	0		ENST00000506359.1_1_4:73012322-73013526:+|nuORF;ENSG00000056291|ENST00000308744|NPFFR2;nc|ENSG00000056291|Q9Y5X5-3|NPFFR2;nc|ENSG00000056291|Q9Y5X5|NPFFR2	ENST00000506359.1_1_4:73012322-73013526:+|nuORF	ENST00000506359.1_1_4:73012322-73013526:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.75482177734375	2	497.753267	993.491981	0.014655	7.2946E-06	4.056	0.0020189	4.0707	0.0020262	497.75513738686726	115.81	1.2483	114.41	114.07	115.32	-1.3977					70	24	4	0	0	0	0.66704	1	10788	10788		50.025	0	1	148910			40282	1228	33236	33260	43653	43653					-0.005025016195872922
NKTSPVYW	8	Unmodified	_NKTSPVYW_					0	0	0		ENST00000506359.1_1_4:73012322-73013526:+|nuORF;ENSG00000056291|ENST00000308744|NPFFR2;nc|ENSG00000056291|Q9Y5X5-3|NPFFR2;nc|ENSG00000056291|Q9Y5X5|NPFFR2	ENST00000506359.1_1_4:73012322-73013526:+|nuORF	ENST00000506359.1_1_4:73012322-73013526:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	497.753267	993.491981	-0.25193	-0.0001254	4.5796	0.0022795	4.3277	0.0021541	497.7552829555936	114.73	1.1845	114.61	114.26	115.44	-0.11777	0.13025	0.00033538	NaN	50.025	48	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62918			40283	1228	33236	33260							-0.005025016195872922
NKTSPVYW	8	Unmodified	_NKTSPVYW_					0	0	0		ENST00000506359.1_1_4:73012322-73013526:+|nuORF;ENSG00000056291|ENST00000308744|NPFFR2;nc|ENSG00000056291|Q9Y5X5-3|NPFFR2;nc|ENSG00000056291|Q9Y5X5|NPFFR2	ENST00000506359.1_1_4:73012322-73013526:+|nuORF	ENST00000506359.1_1_4:73012322-73013526:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	497.753267	993.491981	-0.556	-0.00027675	4.1444	0.0020629	3.5884	0.0017861	497.75519165464664	115.46	1.184	114.42	114.06	115.24	-1.0414	-0.061573	-9.788E-05	NaN	50.025	48	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113820			40284	1228	33236	33260							-0.005025016195872922
NKTSYINFS	9	Unmodified	_NKTSYINFS_					0	0	0			REV__ENST00000480074.1_1_7:143892998-143904870:+|nuORF	REV__ENST00000480074.1_1_7:143892998-143904870:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	537.2711181640625	2	537.266739	1072.51892	2.6082	0.0014013	3.1803	0.0017087	5.7886	0.00311	537.2684896382216	88.872	4.5522	88.872	88.003	92.555	0					290	110	5	0	0	0	0.48047	1	9600	9600		44.377	0.26039	1	72679000	+		40285	26092	33237	33261	43654	43654					-0.014434377990482972
NKTTGFKIN	9	Unmodified	_NKTTGFKIN_					0	0	0		ENSG00000215045|ENST00000457091|GRID2IP	ENSG00000215045|ENST00000457091|GRID2IP	ENSG00000215045|ENST00000457091|GRID2IP	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.79791259765625	2	511.785099	1021.55564	2.6748	0.0013689	1.2684	0.00064913	3.9432	0.0020181	511.7846625895145	99.365	0.49257	99.365	99.036	99.529	0					16	11	2	0	0	0	0.027462	1	10994	10994		44.117	7.0883	1	223750			40286	9200	33238	33262	43655	43655					0.045728588175165896
NKTTQNLAQK	10	Unmodified	_NKTTQNLAQK_					0	0	0		ENSG00000168899|ENST00000306384|VAMP5;AIDA-VAMP5|1|fusion	ENSG00000168899|ENST00000306384|VAMP5	ENSG00000168899|ENST00000306384|VAMP5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	574.286865234375	2	573.317294	1144.62004	-0.14614	-8.3784E-05	2.6817	0.0015375	2.5356	0.0014537	573.3187925483405	112.42	0.71418	110.91	110.58	111.29	-1.5111					22	13	2	0	0	0	0.026782	1	10427	10427		45.972	20.398	1	96372			40287	53	33239	33263	43656	43656					0.053510139036461624
NKTTQNLAQK	10	Unmodified	_NKTTQNLAQK_					0	0	0		ENSG00000168899|ENST00000306384|VAMP5;AIDA-VAMP5|1|fusion	ENSG00000168899|ENST00000306384|VAMP5	ENSG00000168899|ENST00000306384|VAMP5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	573.317294	1144.62004	-0.68204	-0.00039102	3.7348	0.0021413	3.0528	0.0017502	573.3193714213729	111.06	0.69085	110.92	110.63	111.32	-0.13961	0.01587	0.0010035	NaN	45.972	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74198			40288	53	33239	33263							0.053510139036461624
NKTTQNLAQK	10	Unmodified	_NKTTQNLAQK_					0	0	0		ENSG00000168899|ENST00000306384|VAMP5;AIDA-VAMP5|1|fusion	ENSG00000168899|ENST00000306384|VAMP5	ENSG00000168899|ENST00000306384|VAMP5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	573.317294	1144.62004	1.2469	0.00071489	1.6391	0.00093974	2.8861	0.0016546	573.3181369370268	111.99	0.69041	110.89	110.6	111.29	-1.1038	-0.016452	-0.0013995	NaN	45.972	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95463			40289	53	33239	33263							0.053510139036461624
NKTVSFLLN	9	Unmodified	_NKTVSFLLN_					0	0	0		ENST00000481438.1_1_9:34614020-34614733:-|nuORF	ENST00000481438.1_1_9:34614020-34614733:-|nuORF	ENST00000481438.1_1_9:34614020-34614733:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.305419921875	2	518.295299	1034.57605	-0.80422	-0.00041683	-0.63384	-0.00032852	-1.4381	-0.00074534	518.2952096179919	103.97	0.89283	101.85	101.64	102.53	-2.1192					28	16	3	0	0	0	0.027462	1	9408	9408		26.693	0	1	14567			40290	12545	33240	33264	43657	43657					0.060140294773418645
NKTYRVDD	8	Unmodified	_NKTYRVDD_					0	0	0		ENSG00000184571|ENST00000616349|PIWIL3;nc|ENSG00000184571|Q7Z3Z3|PIWIL3;nc|ENSG00000125207|Q96J94-3|PIWIL1;nc|ENSG00000125207|Q96J94-2|PIWIL1;ENSG00000125207|ENST00000245255|PIWIL1	ENSG00000184571|ENST00000616349|PIWIL3	ENSG00000184571|ENST00000616349|PIWIL3	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.31256103515625	2	505.748713	1009.48287	-0.68942	-0.00034867	1.4322	0.00072433	0.74277	0.00037565	505.74928392510844	53.575	0.38602	53.575	53.347	53.733	0					14	8	2	0	0	0	0.028476	1	4271	4271		21.96	9.753	1	258200			40291	8171	33241	33265	43658	43658					-0.02148894975903204
NKVCGSGLRSI	11	Unmodified	_NKVCGSGLRSI_					0	0	0		tr|A0A7D6ZWB1|A0A7D6ZWB1_9CLOTAcetyl-CoAacetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18295PE=3SV=1	tr|A0A7D6ZWB1|A0A7D6ZWB1_9CLOTAcetyl-CoAacetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18295PE=3SV=1	tr|A0A7D6ZWB1|A0A7D6ZWB1_9CLOTAcetyl-CoAacetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18295PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3065795898438	2	567.308415	1132.60228	0.54664	0.00031011	-4.3173	-0.0024493	-3.7707	-0.0021391	567.3059047252544	63.844	1.3078	60.369	60.061	61.368	-3.475					75	26	4	0	0	0	0.59615	1	4528	4528		45.022	0.9054	1	1323600			40292	35835	33242	33266	43659	43659					0.04127975377150506
NKVFKFKH	8	Unmodified	_NKVFKFKH_					0	0	0		nc|ENSG00000066827|Q9P243-3|ZFAT;nc|ENSG00000066827|Q9P243-2|ZFAT;ENSG00000066827|ENST00000377838|ZFAT;nc|ENSG00000066827|Q9P243-4|ZFAT	nc|ENSG00000066827|Q9P243-3|ZFAT	nc|ENSG00000066827|Q9P243-3|ZFAT	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.7946166992188	2	524.308544	1046.60253	-0.82121	-0.00043057	3.0839	0.0016169	2.2627	0.0011864	524.8105734053381	39.743	0.39664	36.789	36.616	37.012	-2.9541					10	7	2	0	0	0	0.028476	1	1676	1676		7.6903	0	1	7391.7			40293	1360	33243	33267	43660	43660					0.0810976315933658
NKVFLDAGGK	10	Unmodified	_NKVFLDAGGK_					0	0	0			REV__APMAP|p.E299K|1|0.12|ENSG00000101474|chr20:24969038-24969038|C/T|missense_variant	REV__APMAP|p.E299K|1|0.12|ENSG00000101474|chr20:24969038-24969038|C/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7554931640625	2	524.792924	1047.57129	-0.77972	-0.00040919	3.3813	0.0017745	2.6016	0.0013653	524.7945894747108	54.526	0.38284	54.526	54.378	54.761	0					13	8	2	0	0	0	0.026519	1	4393	4393		51.528	10.75	1	302060	+		40294	15648	33244	33268	43661	43661					0.049411453345555856
NKVGIVPQ	8	Unmodified	_NKVGIVPQ_					0	0	0		tr|A0A7D6ZU43|A0A7D6ZU43_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22705PE=4SV=1	tr|A0A7D6ZU43|A0A7D6ZU43_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22705PE=4SV=1	tr|A0A7D6ZU43|A0A7D6ZU43_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22705PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	428.7491760253906	2	427.758352	853.502152	-0.185	-7.9137E-05	-1.7737	-0.00075872	-1.9587	-0.00083785	427.7573263441344	58.979	0.1986	58.979	58.812	59.011	0					7	4	2	0	0	0	0.028476	1	5030	5030		23.042	10.836	1	264840			40295	35766	33245	33269	43662	43662					0.0695410610566114
NKVIWVGI	8	Unmodified	_NKVIWVGI_					0	0	0		ENSG00000075673|ENST00000381946|ATP12A;nc|ENSG00000075673|P54707-2|ATP12A	ENSG00000075673|ENST00000381946|ATP12A	ENSG00000075673|ENST00000381946|ATP12A	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.7444763183594	2	464.78437	927.554188	1.7324	0.0008052	-4.0694	-0.0018914	-2.3369	-0.0010862	464.7824697555869	87.41	0.74706	87.41	87.174	87.921	0					35	17	3	0	0	0	0.028476	1	9251	9251		52.299	15.271	1	1533400			40296	1539	33246	33270	43663	43663					0.0875126951943912
NKVKAQGRKLI	11	Unmodified	_NKVKAQGRKLI_					0	0	0			REV__ENST00000462348.1_1_6:42848614-42854030:+|nuORF	REV__ENST00000462348.1_1_6:42848614-42854030:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	418.927978515625	3	418.93834	1253.79319	0.71523	0.00029964	-1.7993	-0.00075378	-1.084	-0.00045414	418.93778717086434	103.38	0.47433	101.95	101.71	102.18	-1.4347					13	8	2	0	0	0	0.026079	1	7145	7145		19.263	7.6268	1	18138	+		40297	20000	33247	33271	43664	43664					0.17644424750756116
NKVKDGKLFT	10	Unmodified	_NKVKDGKLFT_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.8035278320312	2	575.334956	1148.65536	-1.3237	-0.00076154	4.362	0.0025096	3.0383	0.001748	575.3371857449988	63.853	0.44162	63.853	63.69	64.132	0					17	10	2	0	0	0	0.026826	1	5778	5778		52.937	12.159	1	235050	+		40298	19568	33248	33272	43665	43665					0.08697676431461332
NKVKKPLG	8	Unmodified	_NKVKKPLG_					0	0	0			REV__tr|A0A7D6W066|A0A7D6W066_9CLOT1-acyl-sn-glycerol-3-phosphateacyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22695PE=3SV=1	REV__tr|A0A7D6W066|A0A7D6W066_9CLOT1-acyl-sn-glycerol-3-phosphateacyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22695PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.2666931152344	2	442.28982	882.565087	-0.69579	-0.00030774	0.20804	9.2016E-05	-0.48775	-0.00021573	442.28997260742426	63.239	0.6276	59.764	59.433	60.061	-3.475					17	12	2	0	0	0	0.028476	1	4419	4419		42.474	8.9589	1	27413	+		40299	31851	33249	33273	43666	43666					0.11910671893713243
NKVKKPLG	8	Unmodified	_NKVKKPLG_					0	0	0			REV__tr|A0A7D6W066|A0A7D6W066_9CLOT1-acyl-sn-glycerol-3-phosphateacyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22695PE=3SV=1	REV__tr|A0A7D6W066|A0A7D6W066_9CLOT1-acyl-sn-glycerol-3-phosphateacyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22695PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	442.28982	882.565087	-0.2129	-9.4164E-05	0.88076	0.00038955	0.66786	0.00029539	442.2898507657825	62.277	0.9622	59.518	59.236	60.199	-2.7593	-0.12298	0.00034363	NaN	42.474	29	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21120	+		40300	31851	33249	33273							0.11910671893713243
NKVLASPKSSM	11	Unmodified	_NKVLASPKSSM_					0	0	0			REV__nc|ENSG00000163873|Q13003-2|GRIK3	REV__nc|ENSG00000163873|Q13003-2|GRIK3	MULTI-MSMS	OvCa9_classI_Rep2	2	581.3191528320312	2	581.318448	1160.62234	2.164	0.001258	-0.94686	-0.00055043	1.2171	0.00070754	581.3176834919786	27.289	0.74899	24.579	24.362	25.111	-2.7097					31	17	3	0	0	0	0.72497	1	451	451		16.007	0	1	30397	+		40301	20904	33250	33274	43667	43667					0.04845726317103072
NKVNKNRS	8	Unmodified	_NKVNKNRS_					0	0	0			REV__ENSG00000196074|ENST00000357552|SYCP2	REV__ENSG00000196074|ENST00000357552|SYCP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.74884033203125	2	480.27269	958.530826	2.1555	0.0010352	2.9347	0.0014094	5.0901	0.0024447	480.27403832881987	76.649	0.44191	76.649	76.48	76.922	0					17	10	2	0	0	0	0.028476	1	7703	7703		38.806	8.3025	1	742410	+		40302	22780	33251	33275	43668	43668					0.049902237348078415
NKVNVGVK	8	Unmodified	_NKVNVGVK_					0	0	0		nc|ENSG00000130176|P51911-2|CNN1;ENSG00000130176|ENST00000252456|CNN1	nc|ENSG00000130176|P51911-2|CNN1	nc|ENSG00000130176|P51911-2|CNN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	429.7386779785156	2	429.263802	856.513051	-0.11049	-4.7429E-05	0.32347	0.00013885	0.21298	9.1423E-05	429.26385560550443	60.162	0.77016	60.162	59.918	60.688	0					35	18	3	0	0	0	0.028476	1	5302	5302		40.573	0	1	1313700			40303	3963	33252	33276	43669	43669					0.0790550847995064
NKVQSRKK	8	Unmodified	_NKVQSRKK_					0	0	0			REV__nc|ENSG00000116731|Q13029-2|PRDM2	REV__nc|ENSG00000116731|Q13029-2|PRDM2	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.3061218261719	2	494.306532	986.598512	0.82704	0.00040881	-1.0691	-0.00052848	-0.24211	-0.00011968	494.3057931737157	33.041	0.74637	30.346	30.003	30.75	-2.6954					23	14	2	0	0	0	0.745	1	844	844		29.15	1.2673	1	48544	+		40304	18317	33253	33277	43670	43670					0.10467673665618804
NKVRNLMAE	9	Unmodified	_NKVRNLMAE_					0	0	0		ENSG00000087253|ENST00000262134|LPCAT2;nc|ENSG00000087253|Q7L5N7-2|LPCAT2	ENSG00000087253|ENST00000262134|LPCAT2	ENSG00000087253|ENST00000262134|LPCAT2	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.8172607421875	2	537.789858	1073.56516	0.080073	4.3063E-05	2.6285	0.0014136	2.7086	0.0014567	537.7930293595967	31.888	0.69567	31.888	31.708	32.403	0					18	13	2	0	0	0	0.027462	1	1342	1342		37.159	0	1	145890			40305	1768	33254	33278	43671	43671					0.03132303831421268
NKVSKKNDTK	10	Unmodified	_NKVSKKNDTK_					0	0	0			REV__ENSG00000183035|ENST00000329312|CYLC1	REV__ENSG00000183035|ENST00000329312|CYLC1	MULTI-SECPEP	OvCa9_classI_Rep2	2	580.83837890625	2	581.332944	1160.65134	0.69205	0.00040231	-0.040949	-2.3805E-05	0.6511	0.0003785	581.3322607117192	91.605	0.52816	90.369	90.114	90.642	-1.2355					18	9	3	0	0	0	0.026493	1	8149	8149		54.776	0	1	56154	+		40306	22337	33255	33279	43672	43672					0.07743586937749569
NKVSLKTNN	9	Unmodified	_NKVSLKTNN_					0	0	0		tr|A0A553SH17|A0A553SH17_NIACIDUF4097domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11965PE=4SV=1	tr|A0A553SH17|A0A553SH17_NIACIDUF4097domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11965PE=4SV=1	tr|A0A553SH17|A0A553SH17_NIACIDUF4097domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11965PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.3020324707031	2	509.288005	1016.56146	1.6144	0.00082218	1.8268	0.00093035	3.4411	0.0017525	509.28890249080797	89.926	1.1875	88.624	88.383	89.571	-1.302					34	23	2	0	0	0	0.027447	1	7992	7992		24.519	0	1	101970			40307	33221	33256	33280	43673	43673					0.05383957329195255
NKVSYINKV	9	Unmodified	_NKVSYINKV_					0	0	0			REV__tr|A0A7D6ZNZ4|A0A7D6ZNZ4_9CLOTNAD(P)/FAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18240PE=4SV=1	REV__tr|A0A7D6ZNZ4|A0A7D6ZNZ4_9CLOTNAD(P)/FAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18240PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.808837890625	2	532.808574	1063.60259	-1.1516	-0.00061358	0.62725	0.0003342	-0.52435	-0.00027938	532.8089107055455	77.667	2.0564	74.851	74.488	76.544	-2.8165					142	42	4	0	0	0	0.28934	1	6310	6310		64.207	3.2353	1	4693600	+		40308	32126	33257	33281	43674	43674					0.07333718368636255
NKVTGGVIL	9	Unmodified	_NKVTGGVIL_					0	0	0			REV__PTCH1|p.S1176Yfs*8|1|0.05|ENSG00000185920|chr9:95449863-95449864|-/T|frameshift_variant	REV__PTCH1|p.S1176Yfs*8|1|0.05|ENSG00000185920|chr9:95449863-95449864|-/T|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.2283630371094	2	450.779285	899.544017	0.47572	0.00021444	0.10932	4.9278E-05	0.58503	0.00026372	450.7789609807281	71.826	0.49338	71.826	71.507	72	0					15	11	2	0	0	0	0.027426	1	6986	6986		35.618	0	1	236090	+		40309	22544	33258	33282	43675	43675					0.09022661794188025
NKVVGVLNVF	10	Unmodified	_NKVVGVLNVF_					0	0	0		ENST00000551191.1_1_12:80222078-80226230:-|nuORF	ENST00000551191.1_1_12:80222078-80226230:-|nuORF	ENST00000551191.1_1_12:80222078-80226230:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	544.8242797851562	2	544.826766	1087.63898	-4.363	-0.0023771	0.3268	0.00017805	-4.0362	-0.002199	544.82700234604	154.97	0.71278	154.74	154.48	155.19	-0.22696					46	16	4	0	0	0	0.78463	1	15787	15787		20.947	0	1	60082			40310	13596	33259	33283	43676	43676					0.09866595265361866
NKVVPKKSSQV	11	Unmodified	_NKVVPKKSSQV_					0	0	0			REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L	REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.5984802246094	3	405.24695	1212.71902	1.126	0.00045631	-3.1321	-0.0012693	-2.0061	-0.00081295	405.2455504123046	30.309	0.24705	30.309	30.186	30.433	0					11	4	3	0	0	0	0.026068	1	1140	1140		11.932	0	1	62486	+		40311	21473	33260	33284	43677	43677					0.12117036868539799
NKVVQAGL	8	Unmodified	_NKVVQAGL_					0	0	0		ENST00000543813.1_1_15:101717595-101728206:-|nuORF;ENSG00000131873|ENST00000254190|CHSY1	ENST00000543813.1_1_15:101717595-101728206:-|nuORF	ENST00000543813.1_1_15:101717595-101728206:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.9039611816406	2	414.750527	827.486502	-0.95814	-0.00039739	0.43925	0.00018218	-0.51889	-0.00021521	414.75065192638885	72.234	0.87684	68.777	68.509	69.386	-3.4563					23	17	2	0	0	0	0.028476	1	5595	5595		37.028	13.986	1	50179			40312	4095	33261	33285	43678	43678					0.06585819588610775
NKWDAVEK	8	Unmodified	_NKWDAVEK_					0	0	0		tr|A0A553SL66|A0A553SL66_NIACIGTPaseDerOS=NialliacirculansOX=1397GN=derPE=3SV=1	tr|A0A553SL66|A0A553SL66_NIACIGTPaseDerOS=NialliacirculansOX=1397GN=derPE=3SV=1	tr|A0A553SL66|A0A553SL66_NIACIGTPaseDerOS=NialliacirculansOX=1397GN=derPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.2710266113281	2	495.256174	988.497795	-0.92456	-0.0004579	-3.0495	-0.0015103	-3.9741	-0.0019682	495.2545056035484	50.31	0.60909	50.31	50.031	50.64	0					23	13	2	0	0	0	0.028476	1	3800	3800		27.882	1.1893	1	914000			40313	33689	33262	33286	43679	43679					0.0030859689209137287
NKWRSRRKML	10	Unmodified	_NKWRSRRKML_					0	0	0		nc|ENSG00000145476|Q6ZWL3-2|CYP4V2;ENSG00000145476|ENST00000378802|CYP4V2;ENST00000507209.5_1_4:187117965-187118319:+|nuORF	nc|ENSG00000145476|Q6ZWL3-2|CYP4V2;ENST00000507209.5_1_4:187117965-187118319:+|nuORF	nc|ENSG00000145476|Q6ZWL3-2|CYP4V2	MULTI-SECPEP	OvCa9_classI_Rep2	2	459.2558288574219	3	458.934824	1373.78264	-0.09933	-4.5586E-05	3.5769	0.0016416	3.4776	0.001596	458.93688508632204	47.887	1.0894	45.177	44.489	45.578	-2.7097					32	21	2	0	0	0	0.027253	1	2887	2887		20.03	3.5006	1	17776			40314	5226;12923	33263	33287	43680	43680					0.11070118824659403
NKWVVLIR	8	Unmodified	_NKWVVLIR_					0	0	0			REV__ENSG00000196865|ENST00000369301|NHLRC2	REV__ENSG00000196865|ENST00000369301|NHLRC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.769775390625	2	514.324194	1026.63383	-0.46437	-0.00023883	-4.3656	-0.0022453	-4.83	-0.0024842	514.3218714675834	41.217	0.491	41.217	41.059	41.55	0					17	10	2	0	0	0	0.028476	1	2570	2570		40.573	0	1	267340	+		40315	22870	33264	33288	43681	43681					0.1215833619339719
NKYGVSLID	9	Unmodified	_NKYGVSLID_					0	0	0		nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-7|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A;ENST00000605744.1_1_11:76922372-76925738:+|nuORF;nc|ENSG00000137474|Q13402-5|MYO7A	nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-5|MYO7A	nc|ENSG00000137474|Q13402-5|MYO7A	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.28302001953125	2	504.771657	1007.52876	0.29632	0.00014957	2.9642	0.0014962	3.2605	0.0016458	504.77296926217747	67.257	3.1662	67.257	64.75	67.916	0					131	79	3	0	0	0	0.027455	1	6239	6239		51.335	20.832	1	2532100			40316	4586;15041	33265	33289	43682	43682					0.025297502063153843
NKYILNSIIPF	11	Unmodified	_NKYILNSIIPF_					0	0	0			REV__tr|A0A7D7AD73|A0A7D7AD73_9CLOTClassCsortaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22030PE=4SV=1	REV__tr|A0A7D7AD73|A0A7D7AD73_9CLOTClassCsortaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22030PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	441.2547912597656	3	441.255334	1320.74417	1.4045	0.00061976	-3.4738	-0.0015328	-2.0692	-0.00091306	441.2537172485591	65.982	1.8287	63.036	62.554	64.383	-2.9459					68	35	4	0	0	0	0.72477	1	2672	2672		18.531	0	1	107960	+		40317	32693	33266	33290	43683	43683					0.09663091671131951
NKYISKTDQS	10	Unmodified	_NKYISKTDQS_					0	0	0			REV__L1PA2_dup23|chr1:43114528-43120516:-|1.3533449411662286|0.3152228216366226|2.1|404.0|77|2|sense	REV__L1PA2_dup23|chr1:43114528-43120516:-|1.3533449411662286|0.3152228216366226|2.1|404.0|77|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.2840576171875	2	592.30131	1182.58807	2.8018	0.0016595	0.8497	0.00050328	3.6515	0.0021628	592.3020365677352	99.339	0.2926	99.339	99.154	99.447	0					8	6	2	0	0	0	0.027145	1	10958	10958		24.519	2.5593	1	126310	+		40318	28481	33267	33291	43684	43684					0.004076014298789232
NKYKDKLD	8	Unmodified	_NKYKDKLD_					0	0	0			REV__nc|ENSG00000144381|P10809-2|HSPD1	REV__nc|ENSG00000144381|P10809-2|HSPD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.7879638671875	2	512.277106	1022.53966	2.3084	0.0011825	3.643	0.0018662	5.9514	0.0030488	512.278850073686	84.241	0.33875	84.241	83.965	84.303	0					10	7	2	0	0	0	0.028476	1	8755	8755		56.721	0	1	245860	+		40319	19907	33268	33292	43685	43685					0.029291525806115715
NKYLRFQPHPR	11	Unmodified	_NKYLRFQPHPR_					0	0	0		SLC33A1|p.Q250H|1|0.06|ENSG00000169359|chr3:155853248-155853248|T/A|missense_variant	SLC33A1|p.Q250H|1|0.06|ENSG00000169359|chr3:155853248-155853248|T/A|missense_variant	SLC33A1|p.Q250H|1|0.06|ENSG00000169359|chr3:155853248-155853248|T/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.78814697265625	3	485.93711	1454.7895	-2.152	-0.0010457	-1.7172	-0.00083448	-3.8693	-0.0018802	485.9367050551417	87.936	0.85576	85.333	84.925	85.781	-2.6027					22	16	2	0	0	0	0.025864	1	7508	7508		28.577	0	1	35928			40320	32831	33269	33293	43686	43686					0.08029754976882941
NKYNGAVNDIK	11	Unmodified	_NKYNGAVNDIK_					0	0	0		SLMAP|p.E313D|1|0.05|ENSG00000163681|chr3:57862059-57862059|G/C|missense_variant	SLMAP|p.E313D|1|0.05|ENSG00000163681|chr3:57862059-57862059|G/C|missense_variant	SLMAP|p.E313D|1|0.05|ENSG00000163681|chr3:57862059-57862059|G/C|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	618.3223876953125	2	618.322576	1234.6306	-0.26764	-0.00016549	0.20838	0.00012884	-0.059264	-3.6645E-05	618.3226707192839	47.063	0.65926	47.063	46.762	47.422	0					33	14	4	0	0	0	0.43993	1	3374	3374		58.23	21.783	1	788470			40321	32838	33270	33294	43687	43687					0.022669965580689677
NKYRAPRGK	9	Unmodified	_NKYRAPRGK_					0	0	0		nc|ENSG00000185176|A6NM10|AQP12B;ENSG00000184945|ENST00000337801|AQP12A;ENSG00000185176|ENST00000407834|AQP12B	nc|ENSG00000185176|A6NM10|AQP12B	nc|ENSG00000185176|A6NM10|AQP12B	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3170166015625	2	545.317432	1088.62031	-2.8527	-0.0015556	1.4949	0.0008152	-1.3578	-0.00074042	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.67509	1	11729	11729		23.042	1.0826	1	337600			40322	8206	33271	33295	43688	43688					0.07954478414171717
NLACYYQLS	9	Unmodified	_NLACYYQLS_					0	0	0			REV__ENST00000549974.5_1_12:105593149-105601775:-|nuORF	REV__ENST00000549974.5_1_12:105593149-105601775:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	537.75390625	2	537.749867	1073.48518	1.1396	0.00061283	1.3099	0.00070441	2.4495	0.0013172	537.7504277456303	124.52	0.83061	124.52	124.19	125.02	0					41	17	3	0	0	0	0.3249	1	14360	14360		60.118	1.3363	1	926500	+		40323	19353	33272	33296	43689	43689					-0.04862182562465023
NLADWMLL	8	Unmodified	_NLADWMLL_					0	0	0			REV__ENSG00000179913|ENST00000318683|B3GNT3	REV__ENSG00000179913|ENST00000318683|B3GNT3	MULTI-MSMS	OvCa99_classI_Rep5	1	488.2556457519531	2	488.252046	974.489538	1.7758	0.00086704	4.1754	0.0020387	5.9512	0.0029057	488.25390899387986	136.37	0.6133	136.37	136.07	136.68	0					28	12	3	0	0	0	0.61436	1	15888	15888		60.972	2.19	1	204580	+		40324	22145	33273	33297	43690	43690					0.0012732665111343522
NLAEALAILHC	11	Unmodified	_NLAEALAILHC_					0	0	0		ENSG00000213088|ENST00000368122|ACKR1;nc|ENSG00000213088|Q16570-2|ACKR1	ENSG00000213088|ENST00000368122|ACKR1	ENSG00000213088|ENST00000368122|ACKR1	MULTI-MSMS	OvCa9_classI_Rep2	2	584.31494140625	2	584.313166	1166.61178	0.96995	0.00056675	2.2682	0.0013253	3.2381	0.0018921	584.3145190889371	29.632	0.48007	26.922	26.83	27.31	-2.7097					14	9	2	0	0	0	0.72516	1	745	745		13.454	1.2472	1	10952			40325	9117	33274	33298	43691	43691					0.03513743662665547
NLAEDIMRL	9	Unmodified	_NLAEDIMRL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa99_classI_Rep5	1	537.78466796875	2	537.784241	1073.55393	1.2167	0.00065433	0.60703	0.00032645	1.8237	0.00098078	537.7844053924715	124.58	1.1822	124.58	124.24	125.42	0					69	27	4	0	0	0	0.03923	2	14396	14372;14396		127.46	42.301	1	2928300			40326	1049	33275	33299	43692;43693	43693					0.020094817372637408
NLAEKLIGV	9	Unmodified	_NLAEKLIGV_					0	0	0		RALGAPB|p.C811Yfs*8|1|0.28|ENSG00000170471|chr20:38539828-38539829|GC/-|frameshift_variant;RALGAPB|p.D897Efs*7|1|0.04|ENSG00000170471|chr20:38541169-38541169|T/-|frameshift_variant;nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;ENST00000495949.1_1_20:37126104-37128277:+|nuORF	RALGAPB|p.C811Yfs*8|1|0.28|ENSG00000170471|chr20:38539828-38539829|GC/-|frameshift_variant	RALGAPB|p.C811Yfs*8|1|0.28|ENSG00000170471|chr20:38539828-38539829|GC/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	478.7931213378906	2	478.792392	955.570232	1.1498	0.00055051	0.055928	2.6778E-05	1.2057	0.00057728	478.79239680647987	103.2	1.2166	103.2	102.93	104.15	0					59	28	4	0	0	0	0.049969	2	11544	11516;11544		118.74	24.172	1	4349900			40327	7107	33276	33300	43694;43695	43695					0.09066930965661868
NLAEKPKTV	9	Unmodified	_NLAEKPKTV_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	OvCa99_classI_Rep5	1	500.2950439453125	2	500.295299	998.576045	-0.72093	-0.00036068	0.050214	2.5122E-05	-0.67072	-0.00033556	500.29507201478174	37.744	0.72217	37.744	37.485	38.207	0					34	15	4	0	0	0	0.059253	1	2093	2093		113.41	17.596	1	516440			40328	4517	33277	33301	43696	43696					0.07670029477321805
NLAEKSLPL	9	Unmodified	_NLAEKSLPL_					0	0	0		ENSG00000100426|ENST00000216268|ZBED4	ENSG00000100426|ENST00000216268|ZBED4	ENSG00000100426|ENST00000216268|ZBED4	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.78070068359375	2	492.78985	983.565146	1.9149	0.00094364	2.7966	0.0013781	4.7115	0.0023218	492.7902587987617	92.85	0.62137	92.85	92.472	93.093	0					24	14	2	0	0	0	0.027462	1	10081	10081		32.812	10.853	1	388260			40329	2067	33278	33302	43697	43697					0.07270627103048355
NLAELEAYL	9	Unmodified	_NLAELEAYL_					0	0	0		ENSG00000079435|ENST00000244289|LIPE;nc|ENSG00000079435|Q05469-2|LIPE	ENSG00000079435|ENST00000244289|LIPE	ENSG00000079435|ENST00000244289|LIPE	MULTI-MSMS	OvCa99_classI_Rep5	1	518.27490234375	2	518.27149	1034.52843	0.91926	0.00047643	1.5599	0.00080845	2.4792	0.0012849	518.2722759447411	146.45	0.79108	146.45	145.98	146.77	0					17	15	2	0	0	0	0.27001	1	17133	17133		66.429	15.094	1	71482			40330	1616	33279	33303	43698	43698					0.012543304864720994
NLAENISRV	9	Unmodified	_NLAENISRV_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.R270Q|1|0.05|ENSG00000100504|chr14:50920587-50920587|C/T|missense_variant;PYGL|p.R270G|1|0.47|ENSG00000100504|chr14:50920588-50920588|G/C|missense_variant;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MSMS	OvCa99_classI_Rep5	1	508.2813415527344	2	508.28018	1014.54581	0.86973	0.00044207	0.19235	9.7768E-05	1.0621	0.00053983	508.28018027384434	74.463	1.3143	74.463	74.249	75.563	0					75	32	4	0	0	0	0.025835	2	7356	7356;7386		140.11	49.511	1	16007000			40331	2078;2131	33280	33304	43699;43700	43699					0.03911670812135526
NLAENISRV	9	Unmodified	_NLAENISRV_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.R270Q|1|0.05|ENSG00000100504|chr14:50920587-50920587|C/T|missense_variant;PYGL|p.R270G|1|0.47|ENSG00000100504|chr14:50920588-50920588|G/C|missense_variant;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MSMS	OvCa9_classI_Rep2	2	508.2803955078125	2	508.28018	1014.54581	-0.81087	-0.00041215	0.66083	0.00033588	-0.15005	-7.6265E-05	508.280429362422	76.728	1.7226	74.938	74.319	76.042	-1.7894					80	32	3	0	0	0	0.17606	1	6373	6373		80.455	10.827	1	444110			40332	2078;2131	33280	33304	43701	43701					0.03911670812135526
NLAENISRV	9	Unmodified	_NLAENISRV_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.R270Q|1|0.05|ENSG00000100504|chr14:50920587-50920587|C/T|missense_variant;PYGL|p.R270G|1|0.47|ENSG00000100504|chr14:50920588-50920588|G/C|missense_variant;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MSMS	OvCa9_classI_Rep3	3	508.28009033203125	2	508.28018	1014.54581	-1.1698	-0.00059456	0.93005	0.00047273	-0.23971	-0.00012184	508.2806763110046	76.792	1.9465	74.421	74.033	75.979	-2.3715					103	35	4	0	0	0	0.061524	5	3983	3972;3977;3983;3990;3998		112.11	31.653	1	1343800			40333	2078;2131	33280	33304	43702;43703;43704;43705;43706	43704					0.03911670812135526
NLAENISRV	9	Unmodified	_NLAENISRV_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;PYGL|p.R270Q|1|0.05|ENSG00000100504|chr14:50920587-50920587|C/T|missense_variant;PYGL|p.R270G|1|0.47|ENSG00000100504|chr14:50920588-50920588|G/C|missense_variant;nc|ENSG00000068976|P11217-2|PYGM;ENSG00000068976|ENST00000164139|PYGM;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100994|ENST00000216962|PYGB	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.2816162109375	2	508.28018	1014.54581	-0.41244	-0.00020964	0.63019	0.00032031	0.21775	0.00011068	508.28034526964467	77.711	1.3438	74.894	74.536	75.88	-2.8165					74	27	4	0	0	0	0.084152	3	6229	6217;6229;6243		101.46	19.935	1	1457800			40334	2078;2131	33280	33304	43707;43708;43709	43708					0.03911670812135526
NLAFQVME	8	Unmodified	_NLAFQVME_					0	0	0		tr|A0A7D6VQZ7|A0A7D6VQZ7_9CLOTFerrousirontransportproteinBOS=ClostridiumintestinaleOX=36845GN=feoBPE=3SV=1	tr|A0A7D6VQZ7|A0A7D6VQZ7_9CLOTFerrousirontransportproteinBOS=ClostridiumintestinaleOX=36845GN=feoBPE=3SV=1	tr|A0A7D6VQZ7|A0A7D6VQZ7_9CLOTFerrousirontransportproteinBOS=ClostridiumintestinaleOX=36845GN=feoBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.9626770019531	2	476.233853	950.453153	-0.6885	-0.00032789	0.86343	0.0004112	0.17493	8.3309E-05	476.2338579467568	103.66	0.25832	103.66	103.47	103.73	0					6	5	2	0	0	0	0.028476	1	11581	11581		40.573	17.53	1	52103			40335	34883	33281	33305	43710	43710					-0.024055502455894384
NLAIITAPT	9	Unmodified	_NLAIITAPT_					0	0	0			REV__tr|A0A553STA3|A0A553STA3_NIACIClassAbeta-lactamase-relatedserinehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_04675PE=4SV=1	REV__tr|A0A553STA3|A0A553STA3_NIACIClassAbeta-lactamase-relatedserinehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_04675PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	456.3009033203125	2	457.271293	912.528032	-0.42183	-0.00019289	1.1945	0.00054619	0.77263	0.0003533	457.27162638753373	88.308	0.69692	86.177	85.957	86.654	-2.1309					25	13	2	0	0	0	0.027462	1	5360	5360		54.776	20.604	1	42829	+		40336	30936	33282	33306	43711	43711					0.06826955557278325
NLAIITAPT	9	Unmodified	_NLAIITAPT_					0	0	0			REV__tr|A0A553STA3|A0A553STA3_NIACIClassAbeta-lactamase-relatedserinehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_04675PE=4SV=1	REV__tr|A0A553STA3|A0A553STA3_NIACIClassAbeta-lactamase-relatedserinehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_04675PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	457.271293	912.528032	2.5298	0.0011568	0.45365	0.00020744	2.9835	0.0013643	457.27149750223896	86.189	0.27737	86.189	86.073	86.35	0	-0.119	0.00028368	NaN	45.972	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180210	+		40337	30936	33282	33306							0.06826955557278325
NLAIITAPT	9	Unmodified	_NLAIITAPT_					0	0	0			REV__tr|A0A553STA3|A0A553STA3_NIACIClassAbeta-lactamase-relatedserinehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_04675PE=4SV=1	REV__tr|A0A553STA3|A0A553STA3_NIACIClassAbeta-lactamase-relatedserinehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_04675PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	457.271293	912.528032	2.5577	0.0011696	-1.8506	-0.00084625	0.70709	0.00032333	457.2702565039343	87.96	0.63601	86.529	86.139	86.775	-1.4311	0.22113	-0.0018237	NaN	45.972	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18352	+		40338	30936	33282	33306							0.06826955557278325
NLALGMPYHG	10	Unmodified	_NLALGMPYHG_					0	0	0		ENSG00000070182|ENST00000644917|SPTB;ENST00000342835.8_1_14:65216026-65230503:-|nuORF	ENSG00000070182|ENST00000644917|SPTB	ENSG00000070182|ENST00000644917|SPTB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.3444213867188	2	536.765852	1071.51715	-1.8973	-0.0010184	2.931	0.0015733	1.0337	0.00055486	537.2690829934827	45.314	0.51999	42.275	42.075	42.595	-3.0385					12	9	2	0	0	0	0.026822	1	2312	2312		30.504	0	1	55764			40339	1421	33283	33307	43712	43712					-0.015747700886549865
NLALSVISL	9	Unmodified	_NLALSVISL_					0	0	0			REV__ZBTB5|p.S156L|1|0.28|ENSG00000168795|chr9:37442085-37442085|G/A|missense_variant	REV__ZBTB5|p.S156L|1|0.28|ENSG00000168795|chr9:37442085-37442085|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	465.284912109375	2	465.286943	928.559333	-1.6358	-0.00076114	-1.5296	-0.00071171	-3.1655	-0.0014728	465.28614320640764	142.28	1.4816	142.05	141.52	143	-0.22697					68	29	3	0	0	0	0.67509	1	14268	14268		23.042	0	1	102120	+		40340	32763	33284	33308	43713	43713					0.09219528591370363
NLANILNEP	9	Unmodified	_NLANILNEP_					0	0	0			REV__ENSG00000079134|ENST00000261600|THOC1	REV__ENSG00000079134|ENST00000261600|THOC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.3230285644531	2	499.269281	996.52401	2.0338	0.0010154	0.2001	9.9904E-05	2.2339	0.0011153	499.2692458695232	76.45	0.76321	76.45	76.036	76.799	0					32	18	3	0	0	0	0.027392	1	7690	7690		73.975	0	1	3368900	+		40341	17034	33285	33309	43714	43714					0.025608660635725755
NLAQIRTFT	9	Unmodified	_NLAQIRTFT_					0	0	0		nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.276611328125	2	532.298373	1062.58219	1.3617	0.00072481	3.7124	0.0019761	5.0741	0.0027009	532.3002727906841	79.017	0.52518	79.017	78.75	79.276	0					22	12	2	0	0	0	0.027462	1	8003	8003		37.159	0	1	643240			40342	1922	33286	33310	43715	43715					0.05340547708851773
NLAQNFVGSN	10	Unmodified	_NLAQNFVGSN_					0	0	0		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-SECPEP	OvCa9_classI_Rep3	3	531.2910766601562	2	532.261988	1062.50942	-0.58962	-0.00031383	2.318	0.0012338	1.7284	0.00091997	532.2628476586514	82.577	1.7832	80.28	79.484	81.267	-2.2963					73	35	3	0	0	0	0.026891	1	4641	4641		18.262	0	1	294930			40343	1564;4088	33287	33311	43716	43716					-0.019332060845727028
NLASFLEQV	9	Unmodified	_NLASFLEQV_					0	0	0		PCBD1|p.I96L|1|0.14|ENSG00000166228|chr10:70883979-70883979|T/G|missense_variant	PCBD1|p.I96L|1|0.14|ENSG00000166228|chr10:70883979-70883979|T/G|missense_variant	PCBD1|p.I96L|1|0.14|ENSG00000166228|chr10:70883979-70883979|T/G|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	510.7718505859375	2	510.771657	1019.52876	1.0498	0.0005362	2.2172	0.0011325	3.267	0.0016687	510.77230472182333	139.44	0.84814	139.44	139.17	140.02	0					19	17	2	0	0	0	0.29519	1	16273	16273		63.534	0	1	82851			40344	15475	33288	33312	43717	43717					0.019777502063448082
NLASIPPLI	9	Unmodified	_NLASIPPLI_					0	0	0		tr|A0A553STR5|A0A553STR5_NIACIDihydrodipicolinatesynthasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05620PE=3SV=1	tr|A0A553STR5|A0A553STR5_NIACIDihydrodipicolinatesynthasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05620PE=3SV=1	tr|A0A553STR5|A0A553STR5_NIACIDihydrodipicolinatesynthasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05620PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	469.2541198730469	2	469.289485	936.564418	2.4922	0.0011696	-0.34509	-0.00016195	2.1471	0.0010076	469.28932413809565	84.76	0.70152	84.76	84.261	84.963	0					19	16	2	0	0	0	0.027462	1	8855	8855		29.15	0	1	210330			40345	34522	33289	33313	43718	43718					0.09359832453992567
NLAVATLQP	9	Unmodified	_NLAVATLQP_					0	0	0			REV__nc|ENSG00000186814|Q86W11-3|ZSCAN30	REV__nc|ENSG00000186814|Q86W11-3|ZSCAN30	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.7469177246094	2	463.768917	925.523281	-0.42485	-0.00019703	-3.4609	-0.001605	-3.8857	-0.0018021	463.7683497154407	54.806	0.68245	54.806	54.632	55.315	0					24	15	2	0	0	0	0.027462	1	4468	4468		18.262	0	1	332410	+		40346	29056	33290	33314	43719	43719					0.05754071414526152
NLAVVTNQAK	10	Unmodified	_NLAVVTNQAK_					0	0	0			REV__tr|A0A7D7A2X2|A0A7D7A2X2_9CLOTPhagetailtapemeasureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10220PE=4SV=1	REV__tr|A0A7D7A2X2|A0A7D7A2X2_9CLOTPhagetailtapemeasureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10220PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.7899780273438	2	529.303655	1056.59276	-1.0527	-0.0005572	0.85739	0.00045382	-0.19532	-0.00010338	529.3038689704714	77.428	1.0665	74.612	74.342	75.409	-2.8165					46	21	3	0	0	0	0.026802	1	6173	6173		19.997	3.5236	1	183440	+		40347	32557	33291	33315	43720	43720					0.0667253036326656
NLAVVTNQAK	10	Unmodified	_NLAVVTNQAK_					0	0	0			REV__tr|A0A7D7A2X2|A0A7D7A2X2_9CLOTPhagetailtapemeasureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10220PE=4SV=1	REV__tr|A0A7D7A2X2|A0A7D7A2X2_9CLOTPhagetailtapemeasureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10220PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	529.303655	1056.59276	-1.203	-0.00063675	1.0029	0.00053083	-0.20012	-0.00010592	529.3039825264954	76.413	1.2037	74.559	73.887	75.091	-1.854	-0.14382	-0.0013638	NaN	8.2351	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60695	+		40348	32557	33291	33315							0.0667253036326656
NLCGAQLAFQ	10	Unmodified	_NLCGAQLAFQ_					0	0	0		ENST00000544490.5_1_11:72532559-72532637:+|nuORF	ENST00000544490.5_1_11:72532559-72532637:+|nuORF	ENST00000544490.5_1_11:72532559-72532637:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	532.76318359375	2	532.763309	1063.51206	-0.45972	-0.00024492	0.14604	7.7803E-05	-0.31369	-0.00016712	532.7632052598339	112.88	3.504	112.76	111.98	115.49	-0.12174					139	70	3	0	0	0	0.31157	1	10697	10697		79.451	5.4763	1	216680			40349	13508	33292	33316	43721	43721					-0.017150739512771906
NLCLNEKLL	9	Unmodified	_NLCLNEKLL_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.7960815429688	2	530.296985	1058.57942	-0.85472	-0.00045325	2.7738	0.0014709	1.919	0.0010177	530.2984351327223	97.902	1.7229	96.959	96.083	97.806	-0.94393					74	34	3	0	0	0	0.027462	1	8911	8911		39.253	7.6186	1	170700	+		40350	17124	33293	33317	43722	43722					0.05246956259702529
NLCTKCVTHS	10	Unmodified	_NLCTKCVTHS_					0	0	0			REV__ENSG00000056586|ENST00000357244|RC3H2	REV__ENSG00000056586|ENST00000357244|RC3H2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.8011474609375	2	553.260076	1104.5056	-0.032712	-1.8098E-05	1.0813	0.00059826	1.0486	0.00058016	553.2605117903807	121.78	0.77231	120.43	120.21	120.98	-1.3479					24	14	2	0	0	0	0.026994	1	11476	11476		25.574	7.2496	1	24526	+		40351	16717	33294	33318	43723	43723					-0.042473351742955856
NLCTKCVTHS	10	Unmodified	_NLCTKCVTHS_					0	0	0			REV__ENSG00000056586|ENST00000357244|RC3H2	REV__ENSG00000056586|ENST00000357244|RC3H2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	553.260076	1104.5056	-0.27411	-0.00015165	1.3516	0.00074781	1.0775	0.00059616	553.2609131187239	120.81	0.5916	120.61	120.36	120.95	-0.19718	0.12886	0.00050785	NaN	25.574	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18933	+		40352	16717	33294	33318							-0.042473351742955856
NLCTKCVTHS	10	Unmodified	_NLCTKCVTHS_					0	0	0			REV__ENSG00000056586|ENST00000357244|RC3H2	REV__ENSG00000056586|ENST00000357244|RC3H2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	553.260076	1104.5056	0.82755	0.00045785	0.48806	0.00027002	1.3156	0.00072787	553.2600512850227	121.44	0.83749	120.41	120.12	120.95	-1.0273	-0.073807	-0.00044772	NaN	25.574	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46217	+		40353	16717	33294	33318							-0.042473351742955856
NLDDTLYNVL	10	Unmodified	_NLDDTLYNVL_					0	0	0			REV__ENSG00000145362|ENST00000357077|ANK2	REV__ENSG00000145362|ENST00000357077|ANK2	MULTI-SECPEP	OvCa9_classI_Rep3	3	589.350830078125	2	590.298236	1178.58192	-1.4445	-0.0008527	3.0783	0.0018171	1.6338	0.00096441	590.2993261297993	87.969	1.1648	85.838	85.442	86.607	-2.1309					65	22	5	0	0	0	0.026659	1	5370	5370		45.972	19.909	1	201060	+		40354	19961	33295	33319	43724	43724					-0.00022916801685823884
NLDEFKII	8	Unmodified	_NLDEFKII_					0	0	0		tr|A0A7D6VQ68|A0A7D6VQ68_9CLOTViralA-typeinclusionproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01500PE=4SV=1	tr|A0A7D6VQ68|A0A7D6VQ68_9CLOTViralA-typeinclusionproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01500PE=4SV=1	tr|A0A7D6VQ68|A0A7D6VQ68_9CLOTViralA-typeinclusionproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01500PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	496.27838134765625	2	496.276575	990.538597	0.76517	0.00037973	1.6204	0.00080415	2.3855	0.0011839	496.2772247996838	153.38	1.4737	153.38	153.05	154.52	0					56	29	4	0	0	0	0.72896	1	18008	18008		37.159	1.5408	1	626080			40355	34824	33296	33320	43725	43725					0.04294938211717181
NLDENKLVDA	10	Unmodified	_NLDENKLVDA_					0	0	0			REV__tr|A0A553SUL9|A0A553SUL9_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_01455PE=4SV=1	REV__tr|A0A553SUL9|A0A553SUL9_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_01455PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.308837890625	2	565.788035	1129.56152	0.67732	0.00038322	0.052808	2.9878E-05	0.73012	0.0004131	566.2899200793313	98.808	0.72192	96.483	96.177	96.899	-2.3253					15	10	2	0	0	0	0.026679	1	8804	8804		52.937	0	1	18912	+		40356	31093	33297	33321	43726	43726					0.0019191253854842216
NLDFVLSFL	9	Unmodified	_NLDFVLSFL_					0	0	0		ENSG00000138095|ENST00000260665|LRPPRC	ENSG00000138095|ENST00000260665|LRPPRC	ENSG00000138095|ENST00000260665|LRPPRC	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.2877807617188	2	534.292225	1066.5699	-1.2292	-0.00065674	-2.4895	-0.0013301	-3.7187	-0.0019869	534.2907381876073	123.64	1.1885	122.28	121.7	122.89	-1.3687					49	23	3	0	0	0	0.44568	1	11721	11721		47.657	8.4045	1	92199			40357	4658	33298	33322	43727	43727					0.039275112458199146
NLDIAFDEPY	10	Unmodified	_NLDIAFDEPY_					0	0	0			REV__nc|ENSG00000088930|Q9H0D6-2|XRN2	REV__nc|ENSG00000088930|Q9H0D6-2|XRN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.319091796875	2	598.777136	1195.53972	2.144	0.0012838	-2.4419	-0.0014622	-0.29792	-0.00017839	598.7755467186332	120.21	1.9232	120.21	119.88	121.8	0					85	44	3	0	0	0	0.026752	1	13829	13829		53.351	14.545	1	7559500	+		40358	17190	33299	33323	43728	43728					-0.05022892210013197
NLDKSILKV	9	Unmodified	_NLDKSILKV_					0	0	0		ENSG00000067248|ENST00000251636|DHX29;DHX29|p.G1201Dfs*33|1|0.04|ENSG00000067248|chr5:55262856-55262857|-/GTAAT|frameshift_variant;ENST00000504778.5_1_5:54579003-54603452:-|nuORF	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	MULTI-MSMS	OvCa99_classI_Rep5	1	515.3182983398438	2	515.318774	1028.623	2.3907	0.001232	-1.7129	-0.00088271	0.67778	0.00034927	515.3181455605607	75.224	0.67542	75.224	75.005	75.68	0					58	16	5	0	0	0	0.051592	1	7466	7466		117.81	2.317	1	2689100			40359	1373	33300	33324	43729	43729					0.1098288902846889
NLDLLDFQL	9	Unmodified	_NLDLLDFQL_					0	0	0			REV__PPP1R3C|p.K182Nfs*19|1|0.04|ENSG00000119938|chr10:91630335-91630336|-/CA|frameshift_variant	REV__PPP1R3C|p.K182Nfs*19|1|0.04|ENSG00000119938|chr10:91630335-91630336|-/CA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	545.79345703125	2	545.792589	1089.57063	1.6952	0.00092523	-1.5993	-0.00087287	0.095929	5.2357E-05	545.7915901231337	135.95	1.3674	135.95	135.41	136.77	0					45	28	3	0	0	0	0.46356	1	15840	15840		45.972	0	1	463630	+		40360	18475	33301	33325	43730	43730					0.029423058948623293
NLDLVLGR	8	Unmodified	_NLDLVLGR_					0	0	0		ENST00000583028.1_1_17:62175367-62207458:-|nuORF	ENST00000583028.1_1_17:62175367-62207458:-|nuORF	ENST00000583028.1_1_17:62175367-62207458:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	449.7539367675781	2	450.269084	898.523616	-0.42915	-0.00019323	-0.081035	-3.6487E-05	-0.51019	-0.00022972	450.26883591229574	45.127	1.563	42.088	41.765	43.328	-3.0385					38	29	2	0	0	0	0.028476	1	2301	2301		27.882	4.8398	1	26204			40361	14006	33302	33326	43731	43731					0.07029491134380805
NLDNEQPD	8	Unmodified	_NLDNEQPD_					0	0	0		ENSG00000135999|ENST00000258484|EPC2;EPC2|p.S751Lfs*15|1|0.05|ENSG00000135999|chr2:148784899-148784900|-/GCTGGAGCCAAATATGGTAT|frameshift_variant	ENSG00000135999|ENST00000258484|EPC2	ENSG00000135999|ENST00000258484|EPC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.2658386230469	2	472.701429	943.388304	0.52997	0.00025052	-2.2178	-0.0010483	-1.6878	-0.00079783	472.70042271397074	102.93	1.0482	100.73	100.15	101.2	-2.1994					26	19	2	0	0	0	0.028476	1	9288	9288		51.335	15.717	1	19293			40362	4444	33303	33327	43732	43732					-0.08565453517894639
NLDNEQPD	8	Unmodified	_NLDNEQPD_					0	0	0		ENSG00000135999|ENST00000258484|EPC2;EPC2|p.S751Lfs*15|1|0.05|ENSG00000135999|chr2:148784899-148784900|-/GCTGGAGCCAAATATGGTAT|frameshift_variant	ENSG00000135999|ENST00000258484|EPC2	ENSG00000135999|ENST00000258484|EPC2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	472.701429	943.388304	0.054656	2.5836E-05	-1.2673	-0.00059906	-1.2126	-0.00057322	472.700679575358	102.28	0.83474	100.76	100.32	101.15	-1.5211	0.014394	0.00036653	NaN	51.335	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24158			40363	4444	33303	33327							-0.08565453517894639
NLDPAVHEV	9	Unmodified	_NLDPAVHEV_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1;ENST00000503738.5_1_2:27851561-27855513:+|nuORF;ENST00000461249.1_1_2:27852141-27855513:+|nuORF;ENST00000478484.5_1_2:27851925-27854072:+|nuORF	nc|ENSG00000198522|Q9HCN4-4|GPN1;ENST00000478484.5_1_2:27851925-27854072:+|nuORF	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-MSMS	OvCa99_classI_Rep5	1	497.25537109375	2	497.253631	992.49271	-0.39869	-0.00019825	0.8004	0.000398	0.40171	0.00019975	497.25388631508446	67.645	0.66927	67.645	67.408	68.077	0					44	16	4	0	0	0	0.2422	1	6348	6348		69.628	6.3214	1	1545000			40364	8824;12493	33304	33328	43733	43733					-0.003837069705241447
NLDSTTVAV	9	Unmodified	_NLDSTTVAV_					0	0	0		ENST00000471596.1_1_1:201459302-201465431:-|nuORF;ENST00000458271.6_1_1:201456134-201465431:-|nuORF;ENST00000532313.5_1_1:201457913-201465398:-|nuORF;ENSG00000159176|ENST00000340006|CSRP1;ENST00000533188.1_1_1:201457913-201476204:-|nuORF;ENST00000533402.5_1_1:201459302-201459740:-|nuORF;ENST00000530120.5_1_1:201453843-201476204:-|nuORF;ENST00000527662.5_1_1:201453843-201459740:-|nuORF	ENST00000471596.1_1_1:201459302-201465431:-|nuORF	ENST00000471596.1_1_1:201459302-201465431:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	460.2412109375	2	460.24019	918.465826	2.4433	0.0011245	0.32295	0.00014863	2.7662	0.0012731	460.24019983940093	86.165	0.89	86.165	85.954	86.844	0					35	21	3	0	0	0	0.091859	1	9080	9080		99.375	19.924	1	1286400			40365	5990	33305	33329	43734	43734					0.0033318441827532297
NLDTLFDEVSV	11	Unmodified	_NLDTLFDEVSV_					0	0	0			REV__nc|ENSG00000139734|Q9NSV4-1|DIAPH3	REV__nc|ENSG00000139734|Q9NSV4-1|DIAPH3	MULTI-MSMS	OvCa99_classI_Rep5	1	626.3084716796875	2	626.3088	1250.60305	1.5873	0.00099415	-1.5383	-0.00096347	0.048992	3.0684E-05	626.3078220024241	91.233	0.9448	91.233	90.976	91.92	0					48	22	3	0	0	0	0.29406	1	9810	9810		68.846	7.8742	1	7866100	+		40366	19633	33306	33330	43735	43735					-0.012229514928321805
NLEAKLQSE	9	Unmodified	_NLEAKLQSE_					0	0	0			REV__tr|A0A553SUR9|A0A553SUR9_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05905PE=4SV=1	REV__tr|A0A553SUR9|A0A553SUR9_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05905PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.781982421875	2	516.272021	1030.52949	-0.21537	-0.00011119	-3.5649	-0.0018405	-3.7803	-0.0019517	516.2704508507907	73.59	0.4698	73.59	73.359	73.829	0					20	11	3	0	0	0	0.02741	1	7223	7223		42.396	6.7778	1	698720	+		40367	31114	33307	33331	43736	43736					0.01544544855391905
NLEARKTKKK	10	Unmodified	_NLEARKTKKK_					0	0	0		nc|ENSG00000113580|P04150-13|NR3C1;nc|ENSG00000113580|P04150-12|NR3C1;nc|ENSG00000113580|P04150-11|NR3C1;nc|ENSG00000113580|P04150-9|NR3C1;nc|ENSG00000113580|P04150-2|NR3C1;nc|ENSG00000113580|P04150-6|NR3C1;nc|ENSG00000113580|P04150-8|NR3C1;nc|ENSG00000113580|P04150-10|NR3C1;ENSG00000113580|ENST00000394464|NR3C1;nc|ENSG00000113580|P04150-3|NR3C1;nc|ENSG00000113580|P04150-16|NR3C1;nc|ENSG00000113580|P04150-15|NR3C1;nc|ENSG00000113580|P04150-14|NR3C1	nc|ENSG00000113580|P04150-13|NR3C1	nc|ENSG00000113580|P04150-13|NR3C1	MULTI-MSMS	OvCa9_classI_Rep3	3	405.92425537109375	3	405.922578	1214.7459	1.7255	0.00070044	1.4821	0.0006016	3.2076	0.001302	405.9230675134814	68.412	1.0012	65.598	64.962	65.964	-2.8143					51	19	4	0	0	0	0.52162	1	2967	2967		51.528	9.1897	1	168270			40368	2977	33308	33332	43737	43737					0.14712145479734318
NLEARKTKKK	10	Unmodified	_NLEARKTKKK_					0	0	0		nc|ENSG00000113580|P04150-13|NR3C1;nc|ENSG00000113580|P04150-12|NR3C1;nc|ENSG00000113580|P04150-11|NR3C1;nc|ENSG00000113580|P04150-9|NR3C1;nc|ENSG00000113580|P04150-2|NR3C1;nc|ENSG00000113580|P04150-6|NR3C1;nc|ENSG00000113580|P04150-8|NR3C1;nc|ENSG00000113580|P04150-10|NR3C1;ENSG00000113580|ENST00000394464|NR3C1;nc|ENSG00000113580|P04150-3|NR3C1;nc|ENSG00000113580|P04150-16|NR3C1;nc|ENSG00000113580|P04150-15|NR3C1;nc|ENSG00000113580|P04150-14|NR3C1	nc|ENSG00000113580|P04150-13|NR3C1	nc|ENSG00000113580|P04150-13|NR3C1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	405.922578	1214.7459	0.10894	4.422E-05	3.3088	0.0013431	3.4177	0.0013873	405.9237930392214	67.933	1.1347	65.271	64.693	65.828	-2.661	-0.22608	0.0013759	NaN	51.528	56	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137160			40369	2977	33308	33332							0.14712145479734318
NLEARKTKKK	10	Unmodified	_NLEARKTKKK_					0	0	0		nc|ENSG00000113580|P04150-13|NR3C1;nc|ENSG00000113580|P04150-12|NR3C1;nc|ENSG00000113580|P04150-11|NR3C1;nc|ENSG00000113580|P04150-9|NR3C1;nc|ENSG00000113580|P04150-2|NR3C1;nc|ENSG00000113580|P04150-6|NR3C1;nc|ENSG00000113580|P04150-8|NR3C1;nc|ENSG00000113580|P04150-10|NR3C1;ENSG00000113580|ENST00000394464|NR3C1;nc|ENSG00000113580|P04150-3|NR3C1;nc|ENSG00000113580|P04150-16|NR3C1;nc|ENSG00000113580|P04150-15|NR3C1;nc|ENSG00000113580|P04150-14|NR3C1	nc|ENSG00000113580|P04150-13|NR3C1	nc|ENSG00000113580|P04150-13|NR3C1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	405.922578	1214.7459	1.097	0.0004453	2.2401	0.00090931	3.3371	0.0013546	405.92337517372476	69.114	1.1312	65.623	64.965	66.096	-3.4902	0.12577	7.4525E-05	NaN	51.528	54	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142120			40370	2977	33308	33332							0.14712145479734318
NLEDYTIQ	8	Unmodified	_NLEDYTIQ_					0	0	0		ENSG00000197816|ENST00000529487|CCDC180;nc|ENSG00000197816|Q9P1Z9|CCDC180;CCDC180|p.H1510Ffs*11|1|0.03|ENSG00000197816|chr9:97370685-97370686|-/TT|frameshift_variant;ENST00000375206.6_1_9:100053158-100139173:+|nuORF;ENST00000529787.2_1_9:100053158-100088872:+|nuORF;ENST00000494917.6_1_9:100069637-100105846:+|nuORF;ENST00000460482.6_1_9:100070037-100107975:+|nuORF	ENSG00000197816|ENST00000529487|CCDC180	ENSG00000197816|ENST00000529487|CCDC180	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.8373107910156	2	498.237647	994.460741	2.0723	0.0010325	-0.85043	-0.00042372	1.2219	0.0006088	498.2373302509806	113.04	0.41011	113.04	112.83	113.24	0					13	8	2	0	0	0	0.028476	1	12870	12870		79.713	16.406	1	68722			40371	8751	33309	33333	43738	43738					-0.03671119444334181
NLEEIRNV	8	Unmodified	_NLEEIRNV_					0	0	0			REV__ENSG00000103544|ENST00000417362|VPS35L	REV__ENSG00000103544|ENST00000417362|VPS35L	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.31982421875	2	493.766906	985.519259	0.12752	6.2966E-05	4.089	0.002019	4.2165	0.002082	493.7688534573282	104.15	1.3525	102.71	102.45	103.8	-1.4347					51	25	3	0	0	0	0.028476	1	7327	7327		45.952	1.8352	1	74489	+		40372	17625	33310	33334	43739	43739					0.02591981920818398
NLEEKINTI	9	Unmodified	_NLEEKINTI_					0	0	0		tr|A0A553SQG6|A0A553SQG6_NIACIGuanylatecyclasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07640PE=4SV=1	tr|A0A553SQG6|A0A553SQG6_NIACIGuanylatecyclasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07640PE=4SV=1	tr|A0A553SQG6|A0A553SQG6_NIACIGuanylatecyclasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07640PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.3076782226562	2	537.295496	1072.57644	0.40083	0.00021536	0.48451	0.00026032	0.88534	0.00047569	537.2957025300258	76.483	1.3577	74.112	73.877	75.234	-2.3715					31	25	2	0	0	0	0.027452	1	3993	3993		33.922	4.7721	1	213470			40373	34158	33311	33335	43740	43740					0.04305404406522939
NLEEVQMQL	9	Unmodified	_NLEEVQMQL_					0	0	0			REV__ENST00000494604.1_1_4:110606253-110608745:+|nuORF	REV__ENST00000494604.1_1_4:110606253-110608745:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	552.2769165039062	2	552.273706	1102.53286	1.5595	0.00086129	3.8484	0.0021254	5.4079	0.0029867	552.2756716617581	135.59	0.75232	135.59	135.27	136.02	0					23	15	2	0	0	0	0.35694	1	15795	15795		56.434	3.4971	1	107720	+		40374	16390	33312	33336	43741	43741					-0.014305283622434217
NLEEVQMQL	9	Unmodified	_NLEEVQMQL_					0	0	0			REV__ENST00000494604.1_1_4:110606253-110608745:+|nuORF	REV__ENST00000494604.1_1_4:110606253-110608745:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	552.273706	1102.53286	1.5595	0.00086129	3.8484	0.0021254	5.4079	0.0029867	552.2756716617581	135.59	0.75232	135.59	135.27	136.02	0	0	0	NaN	56.434	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107720	+		40375	16390	33312	33336							-0.014305283622434217
NLEHGNRKKL	10	Unmodified	_NLEHGNRKKL_					0	0	0			REV__ENST00000509622.5_1_4:113565874-113567513:+|nuORF	REV__ENST00000509622.5_1_4:113565874-113567513:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.2174987792969	3	403.566794	1207.67855	1.3287	0.00053623	-4.2499	-0.0017151	-2.9212	-0.0011789	403.5650609581826	46.753	0.96341	46.753	46.501	47.465	0					39	21	3	0	0	0	0.026843	1	3334	3334		25.126	0	1	967980	+		40376	26930	33313	33337	43742	43742					0.08302115268816124
NLEILDISR	9	Unmodified	_NLEILDISR_					0	0	0		ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.7796020507812	2	536.803488	1071.59242	-2.1049	-0.0011299	1.6423	0.0008816	-0.46258	-0.00024832	536.8041602390945	50.621	0.5162	47.448	47.205	47.721	-3.1734					20	9	3	0	0	0	0.027462	1	2935	2935		51.193	5.2204	1	46830			40377	8412	33314	33338	43743	43743					0.05949110643427957
NLEILDISR	9	Unmodified	_NLEILDISR_					0	0	0		ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	ENSG00000187554|ENST00000642603|TLR5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	536.803488	1071.59242	-1.9234	-0.0010325	2.0367	0.0010933	0.1133	6.0821E-05	536.8044270118695	50.288	0.39811	47.494	47.281	47.68	-2.794	0.022874	0.00018372	NaN	42.864	12	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12699			40378	8412	33314	33338							0.05949110643427957
NLEILHSLDGQ	11	Unmodified	_NLEILHSLDGQ_					0	0	0		tr|A0A553SS23|A0A553SS23_NIACIPASdomainS-boxproteinOS=NialliacirculansOX=1397GN=CEQ21_02130PE=4SV=1	tr|A0A553SS23|A0A553SS23_NIACIPASdomainS-boxproteinOS=NialliacirculansOX=1397GN=CEQ21_02130PE=4SV=1	tr|A0A553SS23|A0A553SS23_NIACIPASdomainS-boxproteinOS=NialliacirculansOX=1397GN=CEQ21_02130PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	619.82275390625	2	619.822409	1237.63027	0.24111	0.00014944	-1.1616	-0.00071999	-0.9205	-0.00057054	619.8215743207109	161.51	1.1116	161.51	160.81	161.92	0					67	21	4	0	0	0	0.39136	1	18914	18914		61.765	0	1	299740			40379	34323	33315	33339	43744	43744					0.020955768382464157
NLEISYAKGLQ	11	Unmodified	_NLEISYAKGLQ_					0	0	0		ENSG00000163072|ENST00000317647|NOSTRIN;nc|ENSG00000163072|Q8IVI9-4|NOSTRIN	ENSG00000163072|ENST00000317647|NOSTRIN	ENSG00000163072|ENST00000317647|NOSTRIN	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.8996887207031	3	412.559194	1234.65575	0.69692	0.00028752	-3.3969	-0.0014014	-2.7	-0.0011139	412.55747640915075	41.032	0.62469	41.032	40.795	41.42	0					26	13	3	0	0	0	0.02595	1	2566	2566		21.032	0	1	127730			40380	6263	33316	33340	43745	43745					0.04781051360669153
NLEKGYDEP	9	Unmodified	_NLEKGYDEP_					0	0	0		tr|A0A553SFY1|A0A553SFY1_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09695PE=4SV=1	tr|A0A553SFY1|A0A553SFY1_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09695PE=4SV=1	tr|A0A553SFY1|A0A553SFY1_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09695PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	532.8081665039062	2	532.748379	1063.4822	-1.6417	-0.0008746	-1.128	-0.00060095	-2.7697	-0.0014756	532.7473527612874	76.398	0.63158	74.544	74.096	74.728	-1.854					14	11	2	0	0	0	0.027452	1	6297	6297		49.536	10.73	1	19639			40381	33091	33317	33341	43746	43746					-0.04699734415612511
NLEKQQKKLH	10	Unmodified	_NLEKQQKKLH_					0	0	0			REV__nc|ENSG00000101333|Q15147-2|PLCB4	REV__nc|ENSG00000101333|Q15147-2|PLCB4	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3701171875	2	633.369861	1264.72517	-4.8824	-0.0030923	3.9881	0.002526	-0.89421	-0.00056637	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.72319	2	13212	13123;13212		27.882	3.3631	1	765700	+		40382	17490	33318	33342	43747;43748	43748					0.10339555100085818
NLELAKDL	8	Unmodified	_NLELAKDL_					0	0	0			REV__ENSG00000135069|ENST00000376588|PSAT1	REV__ENSG00000135069|ENST00000376588|PSAT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.7326965332031	2	458.260925	914.507297	-0.31687	-0.00014521	-0.30876	-0.00014149	-0.62563	-0.0002867	458.26042394126273	44.746	0.39954	44.746	44.44	44.84	0					10	8	2	0	0	0	0.028476	1	3058	3058		87.754	5.4493	1	34135	+		40383	19254	33319	33343	43749	43749					0.04662365177614447
NLELYRVF	8	Unmodified	_NLELYRVF_					0	0	0		tr|A0A7D6ZI67|A0A7D6ZI67_9CLOTLysRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03055PE=3SV=1	tr|A0A7D6ZI67|A0A7D6ZI67_9CLOTLysRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03055PE=3SV=1	tr|A0A7D6ZI67|A0A7D6ZI67_9CLOTLysRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03055PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.2802124023438	2	527.290017	1052.56548	0.028174	1.4856E-05	2.3137	0.00122	2.3418	0.0012348	527.7934924607664	110.81	0.4206	109.21	109.02	109.44	-1.6011					10	7	2	0	0	0	0.028476	1	10188	10188		29.15	0	1	8612.6			40384	35606	33320	33344	43750	43750					0.04130046822888289
NLENALDLAPS	11	Unmodified	_NLENALDLAPS_					0	0	0		ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	ENSG00000071553|ENST00000369762|ATP6AP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	579.3118896484375	2	578.79586	1155.57717	-1.5208	-0.00088023	4.1164	0.0023826	2.5956	0.0015023	578.798259744937	100.83	0.50252	98.567	98.29	98.792	-2.2665					15	9	3	0	0	0	0.02539	1	9006	9006		42.864	0	1	54794			40385	1452	33321	33345	43751	43751					0.005601990555533121
NLENPMRR	8	Unmodified	_NLENPMRR_					0	0	0		MAP4-CDC25A|1|fusion;MAP4-CDC25A|2|fusion;chr3:48183027-48183800|382|11.77|0.62|4.24|-|ENST00000443342|CDC25A,CDC25A;CDC25A|p.G371Vfs*11|1|0.31|ENSG00000164045|chr3:48165690-48165715|CTCTTTAATGAGGTTGGCAAACTTGC/-|frameshift_variant;nc|ENSG00000164045|P30304-2|CDC25A;ENSG00000164045|ENST00000302506|CDC25A;CDC25A-PRKAR2A|1|fusion;CDC25A-PRKAR2A|2|fusion	MAP4-CDC25A|1|fusion	MAP4-CDC25A|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	515.2681884765625	2	515.26655	1028.51855	1.5159	0.00078108	1.0028	0.00051673	2.5187	0.0012978	515.2669159352542	133.46	1.0215	133.46	133.08	134.1	0					44	18	4	0	0	0	0.73205	1	15551	15551		35.618	0	1	817710			40386	14818	33322	33346	43752	43752					0.00542864000112786
NLEQESLL	8	Unmodified	_NLEQESLL_					0	0	0		FAM129B-C9orf50|1|fusion;ENSG00000179058|ENST00000372478|C9orf50	FAM129B-C9orf50|1|fusion	FAM129B-C9orf50|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.7828063964844	2	473.248015	944.481476	0.98237	0.00046491	-0.84402	-0.00039943	0.13836	6.5476E-05	473.24751669619667	60.519	1.0449	57.089	56.749	57.794	-3.43					33	20	2	0	0	0	0.028476	1	4089	4089		71.296	0	1	124400			40387	7800	33323	33347	43753	43753					0.00701470935348425
NLEQESLL	8	Unmodified	_NLEQESLL_					0	0	0		FAM129B-C9orf50|1|fusion;ENSG00000179058|ENST00000372478|C9orf50	FAM129B-C9orf50|1|fusion	FAM129B-C9orf50|1|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	473.248015	944.481476	-0.73255	-0.00034668	1.3446	0.00063631	0.61201	0.00028963	473.24846219910836	60.065	0.78358	57.295	56.983	57.766	-2.7702	0.10276	0.0015023	NaN	51.335	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29839			40388	7800	33323	33347							0.00701470935348425
NLEQQQQET	9	Unmodified	_NLEQQQQET_					0	0	0			REV__tr|A0A7D7A4H8|A0A7D7A4H8_9CLOTC40familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01795PE=3SV=1	REV__tr|A0A7D7A4H8|A0A7D7A4H8_9CLOTC40familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01795PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.3280029296875	2	559.259642	1116.50473	0.56459	0.00031575	-1.1863	-0.00066342	-0.62167	-0.00034767	559.2590346149996	52.866	0.34615	52.866	52.697	53.043	0					15	7	3	0	0	0	0.027426	1	4190	4190		47.657	0	1	153770	+		40389	32609	33324	33348	43754	43754					-0.04886135018000459
NLERGGVEKL	10	Unmodified	_NLERGGVEKL_					0	0	0		ENSG00000102699|ENST00000381989|PARP4;PARP4|p.Y1344Afs*5|1|0.08|ENSG00000102699|chr13:24435111-24435112|-/GC|frameshift_variant	ENSG00000102699|ENST00000381989|PARP4	ENSG00000102699|ENST00000381989|PARP4	MULTI-MSMS	OvCa9_classI_Rep3	3	557.8102416992188	2	557.814387	1113.61422	-3.7502	-0.0020919	-2.9526	-0.001647	-6.7028	-0.0037389	557.8126676020494	145.58	1.5914	144.61	144.29	145.88	-0.97301					90	31	4	0	0	0	0.64697	1	12229	12229		36.447	0.82846	1	788550			40390	2249	33325	33349	43755	43755					0.06195915392004281
NLETKVNRW	9	Unmodified	_NLETKVNRW_					0	0	0			REV__ENST00000375571.5_1_20:31436776-31436899:+|nuORF	REV__ENST00000375571.5_1_20:31436776-31436899:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	580.8401489257812	2	580.314554	1158.61456	-1.5312	-0.00088859	1.3584	0.00078827	-0.17288	-0.00010032	580.3149947988669	92.635	1.0096	90.127	89.704	90.714	-2.5072					51	19	3	0	0	0	0.027441	1	8089	8089		37.159	12.956	1	155450	+		40391	25086	33326	33350	43756	43756					0.04159335111830842
NLFCDVSIY	9	Unmodified	_NLFCDVSIY_					0	0	0		ENSG00000186130|ENST00000373659|ZBTB6	ENSG00000186130|ENST00000373659|ZBTB6	ENSG00000186130|ENST00000373659|ZBTB6	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.8171997070312	2	537.252243	1072.48993	-0.36431	-0.00019573	-2.8907	-0.001553	-3.255	-0.0017487	537.2507502419397	29.545	0.44808	29.545	29.337	29.785	0					11	8	2	0	0	0	0.027462	1	1084	1084		21.96	1.9631	1	18844			40392	8314	33327	33351	43757	43757					-0.043412984196947946
NLFCGDCVPCC	11	Unmodified	_NLFCGDCVPCC_					0	0	0			REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	REV__nc|ENSG00000135253|Q6ZWJ8-4|KCP	MULTI-MSMS	OvCa99_classI_Rep5	1	587.2158203125	2	587.213423	1172.41229	-0.1507	-8.8494E-05	1.7237	0.0010122	1.573	0.00092367	587.2143478307939	60.938	0.77004	60.938	60.688	61.458	0					42	17	4	0	0	0	0.69081	1	5347	5347		32.812	2.3088	1	1276600	+		40393	19268	33328	33352	43758	43758					-0.16701718943386368
NLFDRVVTL	9	Unmodified	_NLFDRVVTL_					0	0	0		ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123;ENST00000487805.6_1_3:49750857-49758735:+|nuORF	ENSG00000164068|ENST00000327697|RNF123	ENSG00000164068|ENST00000327697|RNF123	MULTI-MSMS	OvCa99_classI_Rep5	1	538.8095092773438	2	538.808574	1075.60259	0.93744	0.0005051	1.5027	0.00080964	2.4401	0.0013147	538.8089134059322	124.28	0.68874	124.28	124.06	124.74	0					32	14	3	0	0	0	0.060996	1	14335	14335		112.41	22.041	1	671990			40394	6400	33329	33353	43759	43759					0.06781718368665679
NLFDRVVTL	9	Unmodified	_NLFDRVVTL_					0	0	0		ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123;ENST00000487805.6_1_3:49750857-49758735:+|nuORF	ENSG00000164068|ENST00000327697|RNF123	ENSG00000164068|ENST00000327697|RNF123	MULTI-MSMS	OvCa9_classI_Rep2	2	538.8079223632812	2	538.808574	1075.60259	-0.31744	-0.00017104	-0.045486	-2.4508E-05	-0.36293	-0.00019555	538.8083886212946	124.65	1.0862	124.42	124.17	125.26	-0.23193					45	21	3	0	0	0	0.1149	2	12132	12126;12132		93.143	18.888	1	98530			40395	6400	33329	33353	43760;43761	43761					0.06781718368665679
NLFDRVVTL	9	Unmodified	_NLFDRVVTL_					0	0	0		ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123;ENST00000487805.6_1_3:49750857-49758735:+|nuORF	ENSG00000164068|ENST00000327697|RNF123	ENSG00000164068|ENST00000327697|RNF123	MULTI-MSMS	OvCa9_classI_Rep3	3	538.8082275390625	2	538.808574	1075.60259	2.4054	0.0012961	-2.5752	-0.0013875	-0.16974	-9.1458E-05	538.8070018358005	125.66	1.5632	124.61	124.05	125.62	-1.0519					53	29	3	0	0	0	0.44248	1	9786	9786		47.96	0.30219	1	105020			40396	6400	33329	33353	43762	43762					0.06781718368665679
NLFGSSSV	8	Unmodified	_NLFGSSSV_					0	0	0			REV__ENST00000528683.5_1_11:71640101-71701796:+|nuORF	REV__ENST00000528683.5_1_11:71640101-71701796:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.877197265625	2	405.703243	809.391933	0.91406	0.00037084	-1.9841	-0.00080495	-1.07	-0.00043412	405.70238433974345	47.823	0.25981	47.823	47.681	47.941	0					9	5	2	0	0	0	0.028476	1	3482	3482		16.473	6.7675	1	54844	+		40397	27172	33330	33354	43763	43763					-0.02038738953376651
NLFGTRDRF	9	Unmodified	_NLFGTRDRF_					0	0	0		ENST00000378078.4_1_9:35755401-35755560:+|nuORF	ENST00000378078.4_1_9:35755401-35755560:+|nuORF	ENST00000378078.4_1_9:35755401-35755560:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	563.2959594726562	2	563.293622	1124.57269	1.464	0.00082464	0.001506	8.483E-07	1.4655	0.00082548	563.293537841004	142.36	2.6625	142.36	141.93	144.6	0					88	53	2	0	0	0	0.51865	1	16616	16616		40.778	0	1	1021600			40398	11101	33331	33355	43764	43764					0.01538779423322012
NLFKALTLP	9	Unmodified	_NLFKALTLP_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.29364013671875	2	508.810585	1015.60662	2.5465	0.0012957	-1.3029	-0.00066291	1.2437	0.00063279	508.8096534821458	121.29	0.46478	121.29	121.06	121.52	0					21	10	3	0	0	0	0.027433	1	13940	13940		19.997	0	1	119230			40399	3633	33332	33356	43765	43765					0.09943807862362064
NLFKLNTD	8	Unmodified	_NLFKLNTD_					0	0	0		tr|A0A7D6VVG9|A0A7D6VVG9_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11075PE=4SV=1	tr|A0A7D6VVG9|A0A7D6VVG9_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11075PE=4SV=1	tr|A0A7D6VVG9|A0A7D6VVG9_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11075PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.7700500488281	2	482.758549	963.502546	-0.97433	-0.00047037	2.0823	0.0010052	1.1079	0.00053487	482.75891023624956	65.922	1.5089	62.437	61.791	63.3	-3.4854					41	30	2	0	0	0	0.028476	1	4811	4811		71.296	15.791	1	93411			40400	35221	33333	33357	43766	43766					0.019334810348709652
NLFLKQIIN	9	Unmodified	_NLFLKQIIN_					0	0	0			REV__nc|ENSG00000121446|A5PLK6-4|RGSL1	REV__nc|ENSG00000121446|A5PLK6-4|RGSL1	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.79248046875	2	551.834591	1101.65463	1.8733	0.0010337	-2.4536	-0.001354	-0.58034	-0.00032025	551.8331036266062	65.772	0.89664	63.077	62.67	63.567	-2.6958					44	17	4	0	0	0	0.027462	1	5070	5070		40.778	17.255	1	56351	+		40401	18545	33334	33358	43767	43767					0.10786881782428281
NLFPFNKD	8	Unmodified	_NLFPFNKD_					0	0	0		tr|A0A553SQ59|A0A553SQ59_NIACIHsp20/alphacrystallinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20685PE=4SV=1	tr|A0A553SQ59|A0A553SQ59_NIACIHsp20/alphacrystallinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20685PE=4SV=1	tr|A0A553SQ59|A0A553SQ59_NIACIHsp20/alphacrystallinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20685PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.7628479003906	2	497.753267	993.491981	-0.18046	-8.9826E-05	-0.75422	-0.00037541	-0.93468	-0.00046524	497.7529987393108	75.059	0.57635	71.828	71.629	72.205	-3.2308					14	11	2	0	0	0	0.028476	1	5875	5875		38.806	16.846	1	36770			40402	34122	33335	33359	43768	43768					-0.005025016195759235
NLFPQTSLS	9	Unmodified	_NLFPQTSLS_					0	0	0		CON__ENSEMBL:ENSBTAP00000031900	CON__ENSEMBL:ENSBTAP00000031900	CON__ENSEMBL:ENSBTAP00000031900	MULTI-MSMS	OvCa99_classI_Rep5	1	503.7616882324219	2	503.763832	1005.51311	-0.79872	-0.00040237	-3.3832	-0.0017044	-4.182	-0.0021067	503.76202509668815	26.214	0.50008	26.214	26.042	26.542	0					19	9	3	0	0	0	0.31747	1	666	666		60.972	2.19	1	167300		+	40403	608	33336	33360	43769	43769					0.010574636893011302
NLFPVKGLAS	10	Unmodified	_NLFPVKGLAS_					0	0	0		ENST00000331552.11_1_19:19314086-19314203:-|nuORF	ENST00000331552.11_1_19:19314086-19314203:-|nuORF	ENST00000331552.11_1_19:19314086-19314203:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3036499023438	2	523.305667	1044.59678	-0.69596	-0.0003642	-3.2951	-0.0017244	-3.9911	-0.0020886	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.74374	1	13875	13875		25.574	1.3713	1	130240			40404	10448	33337	33361	43770	43770					0.0762661985700106
NLFQFVKG	8	Unmodified	_NLFQFVKG_					0	0	0			REV__RPL24-MAP2K5|1|fusion	REV__RPL24-MAP2K5|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	476.3205871582031	2	476.766178	951.517802	-0.037136	-1.7705E-05	2.5487	0.0012151	2.5116	0.0011974	476.7672092197847	108.46	0.6428	108.24	108.03	108.67	-0.22498					15	12	2	0	0	0	0.028476	1	10203	10203		38.806	0	1	8275.9	+		40405	18185	33338	33362	43771	43771					0.04010392622717518
NLFSGPKNCL	10	Unmodified	_NLFSGPKNCL_					0	0	0			REV__ENST00000251157.10_2_1:63008280-63008334:-|nuORF	REV__ENST00000251157.10_2_1:63008280-63008334:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.7827758789062	2	546.778959	1091.54336	3.705	0.0020258	2.1907	0.0011978	5.8957	0.0032236	546.7800033528225	131.81	1.3099	130.31	129.98	131.29	-1.5015					60	25	3	0	0	0	0.64697	1	12705	12705		36.447	3.6343	1	73348	+		40406	23862	33339	33363	43772	43772					0.0012549908283290279
NLFVPLHVI	9	Unmodified	_NLFVPLHVI_					0	0	0			REV__KIDINS220|p.H1622Qfs*20|1|0.07|ENSG00000134313|chr2:8731170-8731171|-/CACTTTGTTGGCAATTTTTAAAGCCC|frameshift_variant	REV__KIDINS220|p.H1622Qfs*20|1|0.07|ENSG00000134313|chr2:8731170-8731171|-/CACTTTGTTGGCAATTTTTAAAGCCC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	526.322998046875	2	526.318577	1050.6226	0.77985	0.00041045	2.2262	0.0011717	3.0061	0.0015822	526.319345223261	139.32	0.53229	139.32	139.12	139.66	0					18	10	2	0	0	0	0.58665	1	16266	16266		33.516	1.5607	1	51222	+		40407	19193	33340	33364	43773	43773					0.09931514099275773
NLGKSFCL	8	Unmodified	_NLGKSFCL_					0	0	0		ENSG00000138381|ENST00000260952|ASNSD1	ENSG00000138381|ENST00000260952|ASNSD1	ENSG00000138381|ENST00000260952|ASNSD1	MULTI-MSMS	OvCa99_classI_Rep5	1	441.2318115234375	2	441.231113	880.447674	3.3378	0.0014727	-0.94641	-0.00041758	2.3914	0.0010552	441.23057122271166	77.077	0.78885	77.077	76.841	77.629	0					38	18	3	0	0	0	0.56195	1	7778	7778		71.296	5.3982	1	3948200			40408	4682	33341	33365	43774	43774					0.0026677096258254096
NLGLFILFI	9	Unmodified	_NLGLFILFI_					0	0	0		tr|A0A7D6VTN1|A0A7D6VTN1_9CLOTEnergy-couplingfactortransportertransmembraneproteinEcfTOS=ClostridiumintestinaleOX=36845GN=HZF06_03255PE=4SV=1	tr|A0A7D6VTN1|A0A7D6VTN1_9CLOTEnergy-couplingfactortransportertransmembraneproteinEcfTOS=ClostridiumintestinaleOX=36845GN=HZF06_03255PE=4SV=1	tr|A0A7D6VTN1|A0A7D6VTN1_9CLOTEnergy-couplingfactortransportertransmembraneproteinEcfTOS=ClostridiumintestinaleOX=36845GN=HZF06_03255PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.3223266601562	2	525.323328	1048.6321	-0.84237	-0.00044252	-3.3156	-0.0017417	-4.1579	-0.0021843	525.3214514323331	98.869	1.2908	96.543	96.177	97.468	-2.3253					72	24	4	0	0	0	0.58665	1	8814	8814		33.516	0	1	344970			40409	35126	33342	33366	43775	43775					0.10973282384793492
NLGLSVEF	8	Unmodified	_NLGLSVEF_					0	0	0		ENSG00000126249|ENST00000246535|PDCD2L	ENSG00000126249|ENST00000246535|PDCD2L	ENSG00000126249|ENST00000246535|PDCD2L	MULTI-MSMS	OvCa99_classI_Rep5	1	439.7364501953125	2	439.734543	877.454533	3.2482	0.0014283	-0.31901	-0.00014028	2.9291	0.001288	439.73426594130973	118.01	0.41264	118.01	117.84	118.25	0					16	8	3	0	0	0	0.62934	1	13540	13540		57.811	0.35863	1	226020			40410	3774	33343	33367	43776	43776					0.010904071148161165
NLGMRLLLD	9	Unmodified	_NLGMRLLLD_					0	0	0			REV__ENST00000508867.5_1_5:74842847-74877278:+|nuORF	REV__ENST00000508867.5_1_5:74842847-74877278:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.7948608398438	2	522.797152	1043.57975	-2.9152	-0.0015241	-2.3275	-0.0012168	-5.2427	-0.0027409	522.7959107342928	88.087	1.5038	85.485	85.028	86.532	-2.6027					46	29	2	0	0	0	0.35444	1	7528	7528		56.721	3.3696	1	305510	+		40411	18572	33344	33368	43777	43777					0.059703759795411315
NLGNPTVID	9	Unmodified	_NLGNPTVID_					0	0	0			REV__nc|ENSG00000104812|P13807-2|GYS1	REV__nc|ENSG00000104812|P13807-2|GYS1	MULTI-MSMS	OvCa9_classI_Rep3	3	471.7477722167969	2	471.748182	941.481811	-0.24714	-0.00011659	-0.23144	-0.00010918	-0.47857	-0.00022577	471.7479787376128	116.81	1.2877	115.76	115.49	116.78	-1.0414					55	25	3	0	0	0	0.61208	1	8753	8753		30.504	1.3541	1	307460	+		40412	17682	33345	33369	43778	43778					0.008728906551823457
NLGRYILPL	9	Unmodified	_NLGRYILPL_					0	0	0			REV__tr|A0A553SG61|A0A553SG61_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10285PE=3SV=1	REV__tr|A0A553SG61|A0A553SG61_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10285PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.8179321289062	2	529.821484	1057.62842	1.9395	0.0010276	-0.04202	-2.2263E-05	1.8974	0.0010053	529.8212605359735	92.654	0.54089	92.654	92.385	92.926	0					33	12	4	0	0	0	0.027462	1	9996	9996		55.504	7.5886	1	3064200	+		40413	29664	33346	33370	43779	43779					0.10190612610949756
NLGSEDRFY	9	Unmodified	_NLGSEDRFY_					0	0	0			REV__ENSG00000108387|ENST00000672673|SEPTIN4;REV__ENSG00000184702|ENST00000455784|SEPTIN5	REV__ENSG00000108387|ENST00000672673|SEPTIN4	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3092651367188	2	550.753995	1099.49344	-2.1144	-0.0011645	-1.0036	-0.00055276	-3.1181	-0.0017173	550.7536429069668	104.48	0.7263	104.48	103.85	104.58	0					20	16	2	0	0	0	0.027462	1	11674	11674		31.53	11.533	1	179520	+		40414	17884;22447	33347	33371	43780	43780					-0.052329123214803985
NLGWQLDT	8	Unmodified	_NLGWQLDT_					0	0	0		ENST00000433288.2_1_1:151922871-151923141:-|nuORF	ENST00000433288.2_1_1:151922871-151923141:-|nuORF	ENST00000433288.2_1_1:151922871-151923141:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.75982666015625	2	473.735074	945.455596	-0.70123	-0.0003322	0.76088	0.00036046	0.059654	2.826E-05	473.7353446168878	36.452	0.40509	36.452	36.257	36.662	0					12	8	2	0	0	0	0.028476	1	1907	1907		38.806	0	1	192050			40415	11828	33348	33372	43781	43781					-0.019313785162921704
NLHKILLDI	9	Unmodified	_NLHKILLDI_					0	0	0			REV__ENSG00000107968|ENST00000263056|MAP3K8	REV__ENSG00000107968|ENST00000263056|MAP3K8	MULTI-SECPEP	OvCa9_classI_Rep3	3	539.3016357421875	2	539.834591	1077.65463	-0.01062	-5.7328E-06	-0.031362	-1.693E-05	-0.041982	-2.2663E-05	539.8342246971536	96.914	0.92987	95.085	94.621	95.551	-1.8286					39	17	3	0	0	0	0.027343	1	6409	6409		68.787	0	1	43944	+		40416	17869	33349	33373	43782	43782					0.11890881782437646
NLHKILLDI	9	Unmodified	_NLHKILLDI_					0	0	0			REV__ENSG00000107968|ENST00000263056|MAP3K8	REV__ENSG00000107968|ENST00000263056|MAP3K8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.8631591796875	2	539.834591	1077.65463	2.2478	0.0012134	-1.3873	-0.00074889	0.86055	0.00046455	539.8331191785085	134.93	0.74216	133.39	133.06	133.81	-1.5437					24	14	2	0	0	0	0.027462	1	13098	13098		44.117	0	1	36991	+		40417	17869	33349	33373	43783	43783					0.11890881782437646
NLHMLYQF	8	Unmodified	_NLHMLYQF_					0	0	0			REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.7962036132812	2	533.262945	1064.51134	-0.077503	-4.133E-05	3.2189	0.0017165	3.1414	0.0016752	533.2645011407402	116.07	1.3336	115.03	114.65	115.98	-1.0414					32	26	2	0	0	0	0.028476	1	8689	8689		57.811	9.8518	1	20081	+		40418	20863	33350	33374	43784	43784					-0.018338686003289695
NLHPSWTH	8	Unmodified	_NLHPSWTH_					0	0	0			REV__ENSG00000038219|ENST00000040738|BOD1L1	REV__ENSG00000038219|ENST00000040738|BOD1L1	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.2575988769531	2	496.240858	990.467164	-0.23498	-0.0001166	-0.99888	-0.00049569	-1.2339	-0.00061229	496.24061178201	60.614	0.21158	60.614	60.434	60.646	0					5	4	2	0	0	0	0.028476	1	5291	5291		17.365	0.89182	1	62274	+		40419	16616	33351	33375	43785	43785					-0.028451367022967133
NLHVLYVL	8	Unmodified	_NLHVLYVL_					0	0	0			REV__tr|A0A7D6VNM8|A0A7D6VNM8_9CLOTUDP-N-acetylglucosamine2-epimerase(non-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=wecBPE=3SV=1	REV__tr|A0A7D6VNM8|A0A7D6VNM8_9CLOTUDP-N-acetylglucosamine2-epimerase(non-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=wecBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.7740783691406	2	485.789653	969.564752	-1.0341	-0.00050236	-3.5975	-0.0017476	-4.6316	-0.00225	485.78759963193824	43.287	1.4046	40.28	39.486	40.891	-3.0074					37	26	2	0	0	0	0.028476	1	2065	2065		37.028	27.846	1	50672	+		40420	31195	33352	33376	43786	43786					0.07875252173846548
NLIANTAY	8	Unmodified	_NLIANTAY_					0	0	0		ENSG00000114124|ENST00000682958|GRK7	ENSG00000114124|ENST00000682958|GRK7	ENSG00000114124|ENST00000682958|GRK7	MULTI-SECPEP	OvCa99_classI_Rep5	1	439.5882263183594	2	440.232168	878.449782	0.7758	0.00034153	4.0632	0.0017887	4.839	0.0021303	440.233770867366	68.44	1.2292	68.44	67.916	69.145	0					54	29	3	0	0	0	0.028476	1	6556	6556		30.504	13.799	1	973320			40421	3013	33353	33377	43787	43787					0.005695229720345196
NLIEARKEV	9	Unmodified	_NLIEARKEV_					0	0	0		nc|ENSG00000044459|Q9NXG0|CNTLN;ENSG00000044459|ENST00000380647|CNTLN;CNTLN|p.K1206Sfs*15|1|0.3|ENSG00000044459|chr9:17466063-17466063|A/-|frameshift_variant;nc|ENSG00000044459|Q9NXG0-3|CNTLN	nc|ENSG00000044459|Q9NXG0|CNTLN	nc|ENSG00000044459|Q9NXG0|CNTLN	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3294067382812	2	536.31148	1070.60841	-0.9632	-0.00051658	-2.4131	-0.0012941	-3.3763	-0.0018107	536.3105813024313	34.314	0.28333	34.314	34.161	34.444	0					12	5	3	0	0	0	0.027255	1	1631	1631		82.75	8.4954	1	60868			40422	1133	33354	33378	43788	43788					0.07592816880332975
NLIEARKEV	9	Unmodified	_NLIEARKEV_					0	0	0		nc|ENSG00000044459|Q9NXG0|CNTLN;ENSG00000044459|ENST00000380647|CNTLN;CNTLN|p.K1206Sfs*15|1|0.3|ENSG00000044459|chr9:17466063-17466063|A/-|frameshift_variant;nc|ENSG00000044459|Q9NXG0-3|CNTLN	nc|ENSG00000044459|Q9NXG0|CNTLN	nc|ENSG00000044459|Q9NXG0|CNTLN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	536.31148	1070.60841	-3.5813	-0.0019207	3.2364	0.0017357	-0.34499	-0.00018502	536.3127979388576	36.655	0.44348	33.946	33.795	34.238	-2.7097	-0.063744	0.0030098	NaN	82.75	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10948			40423	1133	33354	33378							0.07592816880332975
NLIEARKEV	9	Unmodified	_NLIEARKEV_					0	0	0		nc|ENSG00000044459|Q9NXG0|CNTLN;ENSG00000044459|ENST00000380647|CNTLN;CNTLN|p.K1206Sfs*15|1|0.3|ENSG00000044459|chr9:17466063-17466063|A/-|frameshift_variant;nc|ENSG00000044459|Q9NXG0-3|CNTLN	nc|ENSG00000044459|Q9NXG0|CNTLN	nc|ENSG00000044459|Q9NXG0|CNTLN	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	536.31148	1070.60841	0.11329	6.0759E-05	0.11375	6.1003E-05	0.22704	0.00012176	536.3112997688004	36.662	0.89656	33.769	33.546	34.442	-2.8925	-0.24026	-0.0003396	NaN	82.75	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80482			40424	1133	33354	33378							0.07592816880332975
NLIFEPMDL	9	Oxidation (M)	_NLIFEPM(Oxidation (M))DL_		NLIFEPM(1)DL		NLIFEPM(69)DL	0	0	1		ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	OvCa9_classI_Rep3	3	553.28515625	2	554.273175	1106.5318	-0.50225	-0.00027839	1.8891	0.0010471	1.3869	0.0007687	554.2738839615341	109.28	2.9135	108.13	106.85	109.76	-1.1444					84	55	2	0	0	0	0.027343	1	7897	7897		68.787	14.011	1	43217			40425	3337	33355	33379	43789	43789		105			-0.017207427311632273
NLIGKPDLL	9	Unmodified	_NLIGKPDLL_					0	0	0			REV__ENSG00000180902|ENST00000321264|D2HGDH	REV__ENSG00000180902|ENST00000321264|D2HGDH	MULTI-MSMS	OvCa9_classI_Rep4_	4	491.8015441894531	2	491.800217	981.585882	-1.7475	-0.00085943	1.401	0.00068899	-0.34656	-0.00017044	491.80078103129136	107.83	3.5166	105.95	105.59	109.11	-1.8785					134	68	3	0	0	0	0.44568	1	9832	9832		47.657	1.6851	1	2385200	+		40426	22205	33356	33380	43790	43790					0.09435217482700864
NLIGTLSDLL	10	Unmodified	_NLIGTLSDLL_					0	0	0			REV__nc|ENSG00000198183|Q9NP55-2|BPIFA1	REV__nc|ENSG00000198183|Q9NP55-2|BPIFA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.3362426757812	2	529.808239	1057.60193	2.4314	0.0012882	-3.5339	-0.0018723	-1.1025	-0.00058413	530.3072389981388	121.59	0.37175	121.59	121.43	121.8	0					9	7	2	0	0	0	0.027149	1	14014	14014		90.37	39.177	1	25440	+		40427	22997	33357	33381	43791	43791					0.07542878928961727
NLIHFDIL	8	Unmodified	_NLIHFDIL_					0	0	0			REV__L1MB3_dup1513|chr1:246270299-246273131:-|1.1805691521590191|0.3959605958472513|1.58|429.0|131|1|anti-sense	REV__L1MB3_dup1513|chr1:246270299-246273131:-|1.1805691521590191|0.3959605958472513|1.58|429.0|131|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.82794189453125	2	492.779285	983.544017	-1.2388	-0.00061046	2.0026	0.00098684	0.76379	0.00037638	492.7801228190841	107.06	0.78522	105.18	104.91	105.69	-1.8785					34	14	3	0	0	0	0.028476	1	9808	9808		53.351	19.836	1	41662	+		40428	28412	33358	33382	43792	43792					0.051586617941893564
NLIHHLGFP	9	Unmodified	_NLIHHLGFP_					0	0	0			REV__tr|A0A7D6VSN6|A0A7D6VSN6_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_23470PE=4SV=1	REV__tr|A0A7D6VSN6|A0A7D6VSN6_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_23470PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.8383178710938	2	524.290351	1046.56615	-1.0399	-0.00054523	-4.4793	-0.0023485	-5.5193	-0.0028937	524.2879256168396	101.29	1.14	100.53	100.17	101.31	-0.76401					42	22	2	0	0	0	0.027433	1	9313	9313		68.485	7.5128	1	141590	+		40429	31523	33359	33383	43793	43793					0.044728862626243426
NLIHKSLP	8	Unmodified	_NLIHKSLP_					0	0	0		sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1;sp|F5HC79|TRM1_HCMVMTripartiteterminasesubunit1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=TRM1PE=3SV=1	sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1	sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	460.7614440917969	2	461.279452	920.544351	-0.85588	-0.0003948	0.23951	0.00011048	-0.61637	-0.00028432	461.27929554311106	79.571	1.3381	76.82	76.038	77.376	-2.7514					47	27	3	0	0	0	0.028476	1	6454	6454		57.811	4.4598	1	212890			40430	32855	33360	33384	43794	43794					0.08090081514046688
NLIIKKTLD	9	Unmodified	_NLIIKKTLD_					0	0	0			REV__tr|A0A7D7AG91|A0A7D7AG91_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08285PE=4SV=1	REV__tr|A0A7D7AG91|A0A7D7AG91_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08285PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.772216796875	2	529.334424	1056.6543	-0.4341	-0.00022978	-0.22395	-0.00011855	-0.65805	-0.00034833	529.3340518841889	98.032	1.3154	95.654	95.116	96.431	-2.3786					56	25	3	0	0	0	0.027462	1	8688	8688		20.947	6.8098	1	186160	+		40431	32723	33361	33385	43795	43795					0.12823462062578983
NLIIPVIKN	9	Unmodified	_NLIIPVIKN_					0	0	0		tr|A0A7D6VPX4|A0A7D6VPX4_9CLOTGAFdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20685PE=4SV=1	tr|A0A7D6VPX4|A0A7D6VPX4_9CLOTGAFdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20685PE=4SV=1	tr|A0A7D6VPX4|A0A7D6VPX4_9CLOTGAFdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20685PE=4SV=1	MSMS	OvCa9_classI_Rep2	2	512.3316040039062	2	512.331685	1022.64882	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.85	1	133.63	133.13	134.13	-0.22696								0	0	0	0.24998	1	13243	13243		18.324	0.95945	1				40432	34805	33362	33386	43796	43796					0.13839783270759654
NLIIVAHEK	9	Unmodified	_NLIIVAHEK_					0	0	0			REV__nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	REV__nc|ENSG00000160216|Q9NRZ7-2|AGPAT3	MULTI-MSMS	OvCa9_classI_Rep3	3	518.811767578125	2	518.811116	1035.60768	0.088256	4.5788E-05	-0.5995	-0.00031103	-0.51125	-0.00026524	518.8107342114864	98.351	1.6273	96.591	95.722	97.349	-1.7595					39	20	2	0	0	0	0.3076	1	6584	6584		62.107	12.897	1	724000	+		40433	20648	33363	33387	43797	43797					0.09130022231261137
NLIIVEKEQI	10	Unmodified	_NLIIVEKEQI_					0	0	0			REV__nc|ENSG00000283706|Q9UI38|PRSS50	REV__nc|ENSG00000283706|Q9UI38|PRSS50	MULTI-MSMS	OvCa99_classI_Rep5	1	400.2400207519531	3	400.239573	1197.69689	1.0941	0.0004379	0.40046	0.00016028	1.4946	0.00059818	400.2396672711276	23.911	0.68874	23.911	23.647	24.336	0					35	13	4	0	0	0	0.69928	1	401	401		30.569	1.9921	1	577660	+		40434	29197	33364	33388	43798	43798					0.10594812400131559
NLIKDRLM	8	Oxidation (M)	_NLIKDRLM(Oxidation (M))_		NLIKDRLM(1)		NLIKDRLM(63)	0	0	1			REV__tr|A0A553SR24|A0A553SR24_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_00215PE=4SV=1	REV__tr|A0A553SR24|A0A553SR24_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_00215PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	509.7876892089844	2	509.789327	1017.5641	-0.97493	-0.00049701	-3.0341	-0.0015468	-4.0091	-0.0020438	509.7875739236814	100.78	1.9275	99.173	98.518	100.45	-1.6053					62	37	4	0	0	0	0.60331	1	6871	6871		63.306	9.9548	1	550400	+		40435	30684	33365	33389	43799	43799		679			0.05602089462490767
NLIKINYLN	9	Unmodified	_NLIKINYLN_					0	0	0		tr|A0A7D7A2H6|A0A7D7A2H6_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16950PE=4SV=1	tr|A0A7D7A2H6|A0A7D7A2H6_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16950PE=4SV=1	tr|A0A7D7A2H6|A0A7D7A2H6_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16950PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.82275390625	2	552.824224	1103.63389	-0.65284	-0.00036091	0.20079	0.000111	-0.45206	-0.00024991	552.8241738200417	127.6	1.5781	126.16	125.89	127.47	-1.4357					69	30	3	0	0	0	0.48324	1	12212	12212		44.117	6.3053	1	306030			40436	36078	33366	33390	43800	43800					0.08622291402775772
NLIKLKTNV	9	Unmodified	_NLIKLKTNV_					0	0	0			REV__tr|A0A553SGG4|A0A553SGG4_NIACIGTPpyrophosphokinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10825PE=4SV=1	REV__tr|A0A553SGG4|A0A553SGG4_NIACIGTPpyrophosphokinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10825PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.2902221679688	2	521.834591	1041.65463	1.9051	0.00099413	-0.089437	-4.6671E-05	1.8156	0.00094746	521.8343635066595	97.125	0.64137	97.125	96.881	97.522	0					30	14	3	0	0	0	0.027455	1	10627	10627		34.173	0	1	1029300	+		40437	29697	33367	33391	43801	43801					0.13546881782417586
NLIKNFAEV	9	Unmodified	_NLIKNFAEV_					0	0	0			REV__nc|ENSG00000143373|Q8N1G0-2|ZNF687	REV__nc|ENSG00000143373|Q8N1G0-2|ZNF687	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.8405151367188	2	524.295299	1046.57605	-0.98687	-0.00051741	1.7783	0.00093236	0.79143	0.00041495	524.2958001516332	103.73	0.52283	101.61	101.33	101.85	-2.1192					14	9	2	0	0	0	0.027403	1	9365	9365		79.713	24.99	1	62888	+		40438	19835	33368	33392	43802	43802					0.054620294773030764
NLIKNFAEV	9	Unmodified	_NLIKNFAEV_					0	0	0			REV__nc|ENSG00000143373|Q8N1G0-2|ZNF687	REV__nc|ENSG00000143373|Q8N1G0-2|ZNF687	MULTI-MATCH	OvCa9_classI_Rep2	2		2	524.295299	1046.57605	-0.95871	-0.00050265	1.766	0.0009259	0.80728	0.00042325	524.2958356180953	102.13	0.64328	101.42	101.27	101.91	-0.71014	-0.098279	0.0003516	NaN	79.713	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55661	+		40439	19835	33368	33392							0.054620294773030764
NLILDESH	8	Unmodified	_NLILDESH_					0	0	0		ENSG00000128534|ENST00000249299|LSM8	ENSG00000128534|ENST00000249299|LSM8	ENSG00000128534|ENST00000249299|LSM8	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.2862548828125	2	470.740357	939.46616	-0.18595	-8.7533E-05	0.40661	0.00019141	0.22066	0.00010387	470.74049713512926	67.648	0.35261	67.648	67.489	67.842	0					13	8	2	0	0	0	0.028476	1	6371	6371		26.796	6.3143	1	198120			40440	3884	33369	33393	43803	43803					-0.005993958618546458
NLILHCVLI	9	Unmodified	_NLILHCVLI_					0	0	0		ENST00000470072.1_1_7:151167581-151168580:-|nuORF	ENST00000470072.1_1_7:151167581-151168580:-|nuORF	ENST00000470072.1_1_7:151167581-151168580:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	519.314453125	2	519.312438	1036.61032	-0.93297	-0.0004845	3.8719	0.0020107	2.9389	0.0015262	519.3142870304888	52.482	2.3784	49.669	49.096	51.474	-2.8129					99	47	4	0	0	0	0.53957	1	3492	3492		38.806	3.6054	1	328220			40441	12356	33370	33394	43804	43804					0.09348154364579386
NLILHCVLI	9	Unmodified	_NLILHCVLI_					0	0	0		ENST00000470072.1_1_7:151167581-151168580:-|nuORF	ENST00000470072.1_1_7:151167581-151168580:-|nuORF	ENST00000470072.1_1_7:151167581-151168580:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	519.312438	1036.61032	-0.99178	-0.00051504	3.6375	0.001889	2.6457	0.001374	519.3141796709893	52.865	2.2833	49.657	49.247	51.53	-3.208	-0.0059319	-0.00011129	NaN	38.806	102	44	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	750560			40442	12356	33370	33394							0.09348154364579386
NLILILLEP	9	Unmodified	_NLILILLEP_					0	0	0		nc|ENSG00000174130|Q9Y2C9-2|TLR6;ENSG00000174130|ENST00000508254|TLR6	nc|ENSG00000174130|Q9Y2C9-2|TLR6	nc|ENSG00000174130|Q9Y2C9-2|TLR6	MULTI-MSMS	OvCa9_classI_Rep2	2	519.332275390625	2	519.333893	1036.65323	0.74298	0.00038586	-3.9623	-0.0020577	-3.2193	-0.0016719	519.3318212319899	70.971	1.0488	68.4	68.114	69.163	-2.5707					53	19	4	0	0	0	0.48324	1	5695	5695		44.117	6.9577	1	947020			40443	7439	33371	33395	43805	43805					0.13637247693645804
NLILIRYTG	9	Unmodified	_NLILIRYTG_					0	0	0		ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8170166015625	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.68424	1	13719	13719		21.96	0	1	166960			40444	4805	33372	33396	43806	43806					0.09498308748311501
NLILIRYTG	9	Unmodified	_NLILIRYTG_					0	0	0		ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	MULTI-MSMS	OvCa9_classI_Rep3	3	531.81591796875	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.63422	4	11415	11345;11390;11415;11478		27.882	4.8398	1	178650			40445	4805	33372	33396	43807;43808;43809;43810	43809					0.09498308748311501
NLILIRYTG	9	Unmodified	_NLILIRYTG_					0	0	0		ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	ENSG00000139826|ENST00000375898|ABHD13	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8187255859375	2	531.818941	1061.62333	0.089047	4.7357E-05	-3.7428	-0.0019905	-3.6538	-0.0019431	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.5811	1	13590	13590		34.173	6.2903	1	263230			40446	4805	33372	33396	43811	43811					0.09498308748311501
NLIMIIPPM	9	Unmodified	_NLIMIIPPM_					0	0	0		ENST00000527508.1_1_11:76637608-76709863:+|nuORF;ENST00000530334.5_1_11:76579304-76726162:+|nuORF;ENSG00000078124|ENST00000532485|ACER3	ENST00000527508.1_1_11:76637608-76709863:+|nuORF	ENST00000527508.1_1_11:76637608-76709863:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.2962646484375	2	521.295399	1040.57624	-0.53376	-0.00027825	2.3054	0.0012018	1.7716	0.00092355	521.296406657637	100.07	0.54483	99.236	98.766	99.311	-0.83052					13	10	2	0	0	0	0.027462	1	9090	9090		35.201	9.7505	1	17239			40447	1586	33373	33397	43812	43812					0.05757989881317371
NLIMKRHFTQA	11	Unmodified	_NLIMKRHFTQA_					0	0	0		ENSG00000145375|ENST00000274008|SPATA5	ENSG00000145375|ENST00000274008|SPATA5	ENSG00000145375|ENST00000274008|SPATA5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	453.25775146484375	3	453.583568	1357.72887	-0.89506	-0.00040598	2.5617	0.0011619	1.6666	0.00075595	453.5845593783419	48.961	0.6804	45.845	45.544	46.224	-3.1168					28	12	3	0	0	0	0.02625	1	2773	2773		9.2118	0.41249	1	46428			40448	5219	33374	33398	43813	43813					0.06431901602286416
NLIMKRHFTQA	11	Unmodified	_NLIMKRHFTQA_					0	0	0		ENSG00000145375|ENST00000274008|SPATA5	ENSG00000145375|ENST00000274008|SPATA5	ENSG00000145375|ENST00000274008|SPATA5	MULTI-MATCH	OvCa9_classI_Rep2	2		3	453.583568	1357.72887	0.95474	0.00043305	0.41414	0.00018785	1.3689	0.0006209	453.5836626566482	48.45	0.55058	45.689	45.478	46.028	-2.7603	-0.077563	-0.0014422	NaN	9.2118	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14416			40449	5219	33374	33398							0.06431901602286416
NLINKKPL	8	Unmodified	_NLINKKPL_					0	0	0		tr|A0A7D6ZZP2|A0A7D6ZZP2_9CLOTRibonucleoside-diphosphatereductasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=HZF06_21070PE=3SV=1	tr|A0A7D6ZZP2|A0A7D6ZZP2_9CLOTRibonucleoside-diphosphatereductasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=HZF06_21070PE=3SV=1	tr|A0A7D6ZZP2|A0A7D6ZZP2_9CLOTRibonucleoside-diphosphatereductasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=HZF06_21070PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.2855224609375	2	470.302927	938.591301	0.011288	5.3088E-06	-2.5626	-0.0012052	-2.5513	-0.0011999	470.30170509771256	91.761	0.3522	89.218	89.012	89.364	-2.5425					8	6	2	0	0	0	0.028476	1	7929	7929		25.45	0	1	8733.3			40450	35969	33375	33399	43814	43814					0.11954941065175717
NLINRIIPA	9	Unmodified	_NLINRIIPA_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	OvCa9_classI_Rep2	2	512.31787109375	2	512.319109	1022.62366	-1.0601	-0.00054311	0.66174	0.00033902	-0.39836	-0.00020409	512.3193628969464	54.362	1.9918	51.548	51.075	53.067	-2.8139					110	39	4	0	0	0	0.31747	2	3712	3712;3718		60.972	8.861	1	832500	+		40451	22731	33376	33400	43815;43816	43815					0.11325728468170837
NLIQRSAT	8	Unmodified	_NLIQRSAT_					0	0	0		L1PA11_dup257|chr1:220255199-220257096:+|1.2080698086480397|0.4810012897383803|1.33|429.0|1|1|sense	L1PA11_dup257|chr1:220255199-220257096:+|1.2080698086480397|0.4810012897383803|1.33|429.0|1|1|sense	L1PA11_dup257|chr1:220255199-220257096:+|1.2080698086480397|0.4810012897383803|1.33|429.0|1|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.929931640625	2	451.756341	901.498129	0.39648	0.00017911	-1.814	-0.00081948	-1.4175	-0.00064037	451.75571865205944	65.362	0.67545	61.876	61.552	62.227	-3.4854					24	13	2	0	0	0	0.028476	1	4736	4736		29.15	0	1	76900			40452	14645	33377	33401	43817	43817					0.043440166119466994
NLIQSAYNL	9	Unmodified	_NLIQSAYNL_					0	0	0		ENSG00000126010|ENST00000380289|GRPR	ENSG00000126010|ENST00000380289|GRPR	ENSG00000126010|ENST00000380289|GRPR	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.2969970703125	2	518.277106	1034.53966	1.1064	0.00057344	2.4198	0.0012541	3.5263	0.0018276	518.277877608116	91.207	0.48631	91.207	91.016	91.502	0					15	11	2	0	0	0	0.027455	1	9832	9832		51.335	3.4199	1	819970			40453	3762	33378	33402	43818	43818					0.023771525806068894
NLITHQKM	8	Oxidation (M)	_NLITHQKM(Oxidation (M))_		NLITHQKM(1)		NLITHQKM(53)	0	0	1		ENSG00000180938|ENST00000319286|ZNF572	ENSG00000180938|ENST00000319286|ZNF572	ENSG00000180938|ENST00000319286|ZNF572	MULTI-MSMS	OvCa99_classI_Rep5	1	500.7667541503906	2	500.765852	999.51715	1.5175	0.00075992	1.5161	0.0007592	3.0336	0.0015191	500.7664716185698	148.57	0.59261	148.57	148.32	148.92	0					25	11	4	0	0	0	0.65062	1	17384	17384		53.351	7.3995	1	151350			40454	7903	33379	33403	43819	43819		241			0.017372299113617373
NLITPMIIT	9	Unmodified	_NLITPMIIT_					0	0	0		tr|A0A7D6ZU73|A0A7D6ZU73_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_23020PE=4SV=1	tr|A0A7D6ZU73|A0A7D6ZU73_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_23020PE=4SV=1	tr|A0A7D6ZU73|A0A7D6ZU73_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_23020PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3346862792969	2	508.296453	1014.57835	0.78227	0.00039762	-2.0323	-0.001033	-1.2501	-0.00063541	508.2955277502215	132.2	0.32573	132.2	132.09	132.41	0					9	6	2	0	0	0	0.027462	1	15376	15376		42.396	3.59	1	44086			40455	35769	33380	33404	43820	43820					0.07164741890778714
NLKAKTSY	8	Unmodified	_NLKAKTSY_					0	0	0			REV__ENSG00000140836|ENST00000268489|ZFHX3	REV__ENSG00000140836|ENST00000268489|ZFHX3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.228271484375	2	462.761092	923.507631	0.18839	8.7181E-05	-1.1512	-0.00053274	-0.96283	-0.00044556	462.7606463650676	141.1	0.62704	139.63	139.45	140.08	-1.4627					18	11	2	0	0	0	0.028476	1	13767	13767		37.159	3.6435	1	15160	+		40456	19702	33381	33405	43821	43821					0.04281784897477792
NLKDELGLNVK	11	Unmodified	_NLKDELGLNVK_					0	0	0			REV__tr|A0A7D6VWR9|A0A7D6VWR9_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09350PE=4SV=1	REV__tr|A0A7D6VWR9|A0A7D6VWR9_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09350PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	414.9049072265625	3	414.906594	1241.69795	-1.8177	-0.00075419	-0.43755	-0.00018154	-2.2553	-0.00093573	414.9064020831429	36.035	0.88996	33.325	33.102	33.992	-2.7097					37	17	3	0	0	0	0.72069	1	1513	1513		22.562	0	1	88921	+		40457	31754	33382	33406	43822	43822					0.08677026769032636
NLKDPAHDF	9	Unmodified	_NLKDPAHDF_					0	0	0			REV__ENSG00000197702|ENST00000334956|PARVA	REV__ENSG00000197702|ENST00000334956|PARVA	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.3389282226562	2	528.759081	1055.50361	-0.80808	-0.00042728	1.2588	0.00066561	0.45074	0.00023833	529.2605775852398	69.696	0.24869	69.696	69.591	69.84	0					7	5	2	0	0	0	0.027462	1	6630	6630		26.693	0	1	69780	+		40458	22943	33383	33407	43823	43823					-0.02192304596246686
NLKERKEC	8	Unmodified	_NLKERKEC_					0	0	0		nc|ENSG00000132670|P18433-6|PTPRA;ENSG00000132670|ENST00000399903|PTPRA	nc|ENSG00000132670|P18433-6|PTPRA	nc|ENSG00000132670|P18433-6|PTPRA	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.7915954589844	2	510.268758	1018.52296	-0.4083	-0.00020834	0.91911	0.00046899	0.5108	0.00026065	510.26924570733604	67.808	0.97557	67.808	67.298	68.274	0					47	24	3	0	0	0	0.028476	1	6296	6296		34.173	15.848	1	1932900			40459	4159	33384	33408	43824	43824					0.014443284230196696
NLKKGSLIH	9	Unmodified	_NLKKGSLIH_					0	0	0		tr|A0A7D6VUQ5|A0A7D6VUQ5_9CLOTFHAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02595PE=4SV=1	tr|A0A7D6VUQ5|A0A7D6VUQ5_9CLOTFHAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02595PE=4SV=1	tr|A0A7D6VUQ5|A0A7D6VUQ5_9CLOTFHAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02595PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.3122253417969	2	505.311284	1008.60801	-0.54741	-0.00027661	0.16734	8.456E-05	-0.38006	-0.00019205	505.31124275930443	83.201	1.2651	80.53	80.185	81.45	-2.6711					81	25	4	0	0	0	0.48324	1	6903	6903		44.117	0	1	541880			40460	35196	33385	33409	43825	43825					0.10405441951138528
NLKLKDINN	9	Unmodified	_NLKLKDINN_					0	0	0		tr|A0A7D6VS91|A0A7D6VS91_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_04885PE=4SV=1	tr|A0A7D6VS91|A0A7D6VS91_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_04885PE=4SV=1	tr|A0A7D6VS91|A0A7D6VS91_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_04885PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.342041015625	2	536.31148	1070.60841	-0.39257	-0.00021054	1.4413	0.00077296	1.0487	0.00056243	536.3112577155194	41.353	0.35603	41.353	41.149	41.505	0					12	7	3	0	0	0	0.027462	1	2575	2575		20.947	0	1	83200			40461	34998	33386	33410	43826	43826					0.07592816880310238
NLKPPESSQ	9	Unmodified	_NLKPPESSQ_					0	0	0			REV__ENSG00000168334|ENST00000340369|XIRP1	REV__ENSG00000168334|ENST00000340369|XIRP1	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.79400634765625	2	500.258914	998.503274	-0.48953	-0.00024489	0.66068	0.00033051	0.17115	8.5618E-05	500.2613331674856	109.47	0.21018	108.32	108.19	108.4	-1.1444					7	3	3	0	0	0	0.02744	1	7864	7864		52.937	17.318	1	10026	+		40462	21365	33387	33411	43827	43827					0.003962756839086978
NLKQAEEAK	9	Unmodified	_NLKQAEEAK_					0	0	0		nc|ENSG00000276234|O75478-2|TADA2A;nc|ENSG00000276234|O75478|TADA2A;ENSG00000276234|ENST00000615182|TADA2A	nc|ENSG00000276234|O75478-2|TADA2A	nc|ENSG00000276234|O75478-2|TADA2A	MULTI-MSMS	OvCa9_classI_Rep2	2	515.7833251953125	2	515.780013	1029.54547	3.8164	0.0019684	0.17817	9.1897E-05	3.9946	0.0020603	515.7800627654972	25.113	0.82449	22.404	22.29	23.115	-2.7097					31	17	2	0	0	0	0.68424	1	234	234		21.96	3.6978	1	167870			40463	9578	33388	33412	43828	43828					0.03188251092274186
NLKRAIYR	8	Unmodified	_NLKRAIYR_					0	0	0			REV__ENSG00000261587|ENST00000696146|TMEM249	REV__ENSG00000261587|ENST00000696146|TMEM249	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.2506713867188	2	517.3169	1032.61925	2.2615	0.0011699	-3.1389	-0.0016238	-0.87738	-0.00045389	517.3175261612384	75.675	0.20078	75.675	75.563	75.764	0					5	4	2	0	0	0	0.028476	1	7540	7540		25.45	0	1	72973	+		40464	23568	33389	33413	43829	43829					0.10424264045263953
NLKSRVQKQ	9	Unmodified	_NLKSRVQKQ_					0	0	0		SPTA1|p.L1630Afs*42|1|0.08|ENSG00000163554|chr1:158639675-158639676|-/T|frameshift_variant;SPTA1|p.S2024Rfs*32|1|0.04|ENSG00000163554|chr1:158623034-158623034|G/-|frameshift_variant;SPTA1|p.V2114Gfs*21|1|0.16|ENSG00000163554|chr1:158620246-158620247|-/ATCTTCTAAGTCTCCTTTTTCTAGGTCATTTACCC|frameshift_variant;nc|ENSG00000163554|P02549-2|SPTA1;ENSG00000163554|ENST00000643759|SPTA1	SPTA1|p.L1630Afs*42|1|0.08|ENSG00000163554|chr1:158639675-158639676|-/T|frameshift_variant	SPTA1|p.L1630Afs*42|1|0.08|ENSG00000163554|chr1:158639675-158639676|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	550.8331909179688	2	550.830372	1099.64619	0.7561	0.00041648	2.8034	0.0015442	3.5595	0.0019607	550.831810295029	31.273	0.88647	28.563	28.347	29.233	-2.7097					37	17	3	0	0	0	0.2077	1	933	933		75.043	3.1658	1	181500			40465	6325	33390	33414	43830	43830					0.1003532786580763
NLKTINSTSKS	11	Unmodified	_NLKTINSTSKS_					0	0	0			REV__ENSG00000126368|ENST00000246672|NR1D1	REV__ENSG00000126368|ENST00000246672|NR1D1	MULTI-SECPEP	OvCa99_classI_Rep5	1	597.8152465820312	2	596.830234	1191.64592	0.40727	0.00024307	2.2229	0.0013267	2.6301	0.0015697	596.8317717648812	58.01	0.41899	58.01	57.818	58.237	0					21	9	3	0	0	0	0.025958	1	4895	4895		16.007	2.5527	1	592540	+		40466	18781	33391	33415	43831	43831					0.05775863355279398
NLKTNINIL	9	Unmodified	_NLKTNINIL_					0	0	0		tr|A0A7D6ZIM1|A0A7D6ZIM1_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07615PE=3SV=1	tr|A0A7D6ZIM1|A0A7D6ZIM1_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07615PE=3SV=1	tr|A0A7D6ZIM1|A0A7D6ZIM1_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07615PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	521.8132934570312	2	521.816399	1041.61824	0.45107	0.00023538	-0.20287	-0.00010586	0.2482	0.00012951	521.8161309836105	110.4	1.9235	110.23	109.86	111.78	-0.17237					90	38	4	0	0	0	0.075543	1	10420	10420		104.06	13.687	1	440840			40467	35621	33392	33416	43832	43832					0.09910004885705348
NLLASFLPL	9	Unmodified	_NLLASFLPL_					0	0	0		ENSG00000166987|ENST00000355673|MBD6	ENSG00000166987|ENST00000355673|MBD6	ENSG00000166987|ENST00000355673|MBD6	MULTI-MSMS	OvCa9_classI_Rep3	3	494.2959899902344	2	494.29731	986.580068	-1.1483	-0.00056758	-3.9925	-0.0019735	-5.1407	-0.0025411	494.2953202394874	91.548	1.6915	89.524	88.624	90.315	-2.0241					95	33	4	0	0	0	0.38529	1	5786	5786		53.351	0.41475	1	2048800			40468	6745	33393	33417	43833	43833					0.08624118971056305
NLLEEVFHL	9	Unmodified	_NLLEEVFHL_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;ENSG00000164944|ENST00000297591|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	OvCa99_classI_Rep5	1	557.3015747070312	2	557.300581	1112.58661	1.3883	0.00077369	0.54838	0.00030561	1.9367	0.0010793	557.3006933894198	154.88	1.6117	154.88	154.12	155.73	0					65	31	4	0	0	0	0.010652	2	18153	18131;18153		166.68	46.058	1	534270			40469	15150	33394	33418	43834;43835	43835					0.03482012131780721
NLLESQPL	8	Unmodified	_NLLESQPL_					0	0	0		HSH2D|p.S194Ifs*108|2|0.08|ENSG00000196684|chr19:16157304-16157305|-/C|frameshift_variant;ENSG00000196684|ENST00000613986|HSH2D	HSH2D|p.S194Ifs*108|2|0.08|ENSG00000196684|chr19:16157304-16157305|-/C|frameshift_variant	HSH2D|p.S194Ifs*108|2|0.08|ENSG00000196684|chr19:16157304-16157305|-/C|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	457.25390625	2	457.2531	912.491647	-0.32384	-0.00014808	0.47224	0.00021593	0.1484	6.7858E-05	457.2531452177856	48.271	1.1786	48.271	47.941	49.119	0					54	26	3	0	0	0	0.67745	1	3533	3533		47.916	0	1	3105600			40470	8641	33395	33419	43836	43836					0.031900786605774556
NLLHAHVFFI	10	Unmodified	_NLLHAHVFFI_					0	0	0		tr|A0A553SIS2|A0A553SIS2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15390PE=4SV=1	tr|A0A553SIS2|A0A553SIS2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15390PE=4SV=1	tr|A0A553SIS2|A0A553SIS2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15390PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.21942138671875	3	404.229231	1209.66586	2.787	0.0011266	3.4509	0.001395	6.2379	0.0025216	404.2308425616794	90.678	0.47417	90.678	90.541	91.016	0					20	11	3	0	0	0	0.027001	1	9743	9743		28.081	3.8497	1	545670			40471	33419	33396	33420	43837	43837					0.06941703876577776
NLLHLFFTN	9	Unmodified	_NLLHLFFTN_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-MSMS	OvCa99_classI_Rep5	1	559.80517578125	2	559.803291	1117.59203	0.060741	3.4003E-05	-0.94511	-0.00052908	-0.88437	-0.00049507	559.8027489395263	67.788	2.0244	67.788	67.489	69.513	0					131	49	6	0	0	0	0.3076	1	6407	6407		62.107	1.9892	1	32943000			40472	7345	33397	33421	43838	43838					0.03793735714248214
NLLHSSTVE	9	Unmodified	_NLLHSSTVE_					0	0	0		ENST00000480988.5_1_1:113119662-113161548:-|nuORF	ENST00000480988.5_1_1:113119662-113161548:-|nuORF	ENST00000480988.5_1_1:113119662-113161548:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.82183837890625	2	500.258914	998.503274	-0.50911	-0.00025469	1.4991	0.00074994	0.98999	0.00049525	500.2596640308822	48.196	0.99557	48.196	47.812	48.807	0					30	22	2	0	0	0	0.027433	1	3512	3512		54.776	10.245	1	675770			40473	12538	33398	33422	43839	43839					0.003962756839086978
NLLIIISVK	9	Unmodified	_NLLIIISVK_					0	0	0		ENSG00000279514|ENST00000623907|OR4C16	ENSG00000279514|ENST00000623907|OR4C16	ENSG00000279514|ENST00000623907|OR4C16	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.8412780761719	2	506.841885	1011.66922	0.23116	0.00011716	-0.78717	-0.00039897	-0.55601	-0.00028181	506.84135580831617	111.12	1.7807	109.52	109.23	111.01	-1.6011					71	33	3	0	0	0	0.27001	1	10266	10266		66.429	7.6473	1	203860			40474	9598	33399	33423	43840	43840					0.16384953930560187
NLLKAYQSEL	10	Unmodified	_NLLKAYQSEL_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST;REV__nc|ENSG00000151914|Q03001-3|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.3008422851562	2	589.824421	1177.63429	-0.58318	-0.00034397	0.56274	0.00033192	-0.020434	-1.2052E-05	589.8246697135547	36.141	0.50362	36.141	35.939	36.442	0					24	10	4	0	0	0	0.026956	1	1910	1910		34.173	6.2903	1	387250	+		40475	20262;28928	33400	33424	43841	43841					0.052576663319541694
NLLKLSEQN	9	Unmodified	_NLLKLSEQN_					0	0	0			REV__IFNE|p.K44Tfs*40|1|0.06|ENSG00000184995|chr9:21481564-21481565|-/G|frameshift_variant	REV__IFNE|p.K44Tfs*40|1|0.06|ENSG00000184995|chr9:21481564-21481565|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.80615234375	2	529.795663	1057.57677	0.34019	0.00018023	0.52585	0.00027859	0.86604	0.00045882	529.7941505246413	87.214	0.4467	85.783	85.593	86.04	-1.4311					13	8	2	0	0	0	0.027461	1	7579	7579		25.574	0	1	20811	+		40476	28297	33401	33425	43842	43842					0.05028824126384279
NLLLLGKDILE	11	Unmodified	_NLLLLGKDILE_					0	0	0			REV__tr|A0A7D7A041|A0A7D7A041_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08790PE=4SV=1	REV__tr|A0A7D7A041|A0A7D7A041_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08790PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	620.87890625	2	620.879196	1239.74384	0.82481	0.00051211	-2.0982	-0.0013027	-1.2734	-0.00079063	621.3788924253533	155.58	1.1725	155.58	155.22	156.4	0					35	22	2	0	0	0	0.56391	1	18269	18269		47.96	3.5823	1	51191	+		40477	32435	33402	33426	43843	43843					0.13355671951308068
NLLLRSKIL	9	Unmodified	_NLLLRSKIL_					0	0	0		ENST00000497399.1_1_10:97453347-97453710:-|nuORF	ENST00000497399.1_1_10:97453347-97453710:-|nuORF	ENST00000497399.1_1_10:97453347-97453710:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.3065795898438	2	535.358234	1068.70191	0.057199	3.0622E-05	-0.43628	-0.00023357	-0.37909	-0.00020295	535.3579193418274	76.745	1.048	74.374	74.033	75.081	-2.3715					35	19	2	0	0	0	0.027462	1	3978	3978		32.812	6.1195	1	55166			40478	12804	33403	33427	43844	43844					0.1703116105340996
NLLMNSEQP	9	Unmodified	_NLLMNSEQP_					0	0	0		nc|ENSG00000095319|Q5SRE5-2|NUP188;ENSG00000095319|ENST00000372577|NUP188;ENST00000465344.1_1_9:131745812-131747350:+|nuORF	nc|ENSG00000095319|Q5SRE5-2|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.8405151367188	2	523.252774	1044.491	-0.9808	-0.00051321	-0.78517	-0.00041084	-1.766	-0.00092405	523.7545048579127	103.84	0.6826	101.72	101.54	102.22	-2.1192					18	12	2	0	0	0	0.027462	1	9365	9365		35.618	0	1	47903			40479	1924	33404	33428	43845	43845					-0.029470840507883622
NLLNTIKNQI	10	Unmodified	_NLLNTIKNQI_					0	0	0		tr|A0A7D6ZF91|A0A7D6ZF91_9CLOTFlagellarhook-lengthcontrolproteinFliKOS=ClostridiumintestinaleOX=36845GN=HZF06_16855PE=4SV=1	tr|A0A7D6ZF91|A0A7D6ZF91_9CLOTFlagellarhook-lengthcontrolproteinFliKOS=ClostridiumintestinaleOX=36845GN=HZF06_16855PE=4SV=1	tr|A0A7D6ZF91|A0A7D6ZF91_9CLOTFlagellarhook-lengthcontrolproteinFliKOS=ClostridiumintestinaleOX=36845GN=HZF06_16855PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	585.8468017578125	2	585.845687	1169.67682	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.391	1	97.391	96.891	97.891	0								0	0	0	0.15538	1	10697	10697		44.377	0.26039	1				40480	35503	33405	33429	43846	43846					0.09877061460178993
NLLPKLHIV	9	Unmodified	_NLLPKLHIV_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4	ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	OvCa99_classI_Rep5	1	523.8411254882812	2	523.839677	1045.6648	2.4091	0.001262	-0.40573	-0.00021254	2.0034	0.0010495	523.8394983904677	99.097	3.9949	99.097	98.638	102.63	0					211	95	5	0	0	0	0.11171	2	10942	10942;11003		94.006	17.16	1	55507000			40481	7014;9142	33406	33430	43847;43848	43847					0.14379489507655308
NLLPKLHIV	9	Unmodified	_NLLPKLHIV_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4	ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	OvCa9_classI_Rep2	2	523.8394775390625	2	523.839677	1045.6648	-0.98777	-0.00051743	0.39092	0.00020478	-0.59685	-0.00031265	523.8398056937525	101.23	2.917	100.47	100.12	103.04	-0.764					140	58	4	0	0	0	0.14739	3	9300	9294;9300;9306		85.359	13.003	1	863650			40482	7014;9142	33406	33430	43849;43850;43851	43850					0.14379489507655308
NLLPKLHIV	9	Unmodified	_NLLPKLHIV_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4	ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	OvCa9_classI_Rep3	3	523.840576171875	2	523.839677	1045.6648	-0.6268	-0.00032835	0.17947	9.4014E-05	-0.44733	-0.00023433	523.8396857548527	102.58	3.3388	101.05	100.63	103.97	-1.5211					147	63	4	0	0	0	0.14739	2	7051	7051;7061		85.359	8.5128	1	1024800			40483	7014;9142	33406	33430	43852;43853	43852					0.14379489507655308
NLLPKLHIV	9	Unmodified	_NLLPKLHIV_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4	ENSG00000213719|ENST00000375784|CLIC1;ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.8411254882812	2	523.839677	1045.6648	-0.84837	-0.00044441	0.57936	0.00030349	-0.26901	-0.00014092	523.8398892974864	103.3	2.59	101.1	100.67	103.26	-2.1994					128	49	4	0	0	0	0.19716	2	9341	9341;9353		76.847	11.867	1	841680			40484	7014;9142	33406	33430	43854;43855	43854					0.14379489507655308
NLLPKLHVV	9	Unmodified	_NLLPKLHVV_					0	0	0		nc|ENSG00000112782|Q9NZA1-3|CLIC5;ENSG00000112782|ENST00000339561|CLIC5;nc|ENSG00000112782|Q9NZA1|CLIC5;ENST00000484572.1_1_6:45870949-45882153:-|nuORF	nc|ENSG00000112782|Q9NZA1-3|CLIC5	nc|ENSG00000112782|Q9NZA1-3|CLIC5	MULTI-MSMS	OvCa99_classI_Rep5	1	516.83251953125	2	516.831852	1031.64915	1.3673	0.00070667	1.7588	0.00090902	3.1261	0.0016157	516.8325316276141	91.252	0.86342	91.252	91.016	91.879	0					53	20	4	0	0	0	0.21395	1	9814	9814		73.975	10.668	1	7860100			40485	2927	33407	33431	43856	43856					0.1345920299061163
NLLPTVVSY	9	Unmodified	_NLLPTVVSY_					0	0	0			REV__ENSG00000196832|ENST00000641879|OR11G2	REV__ENSG00000196832|ENST00000641879|OR11G2	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.28350830078125	2	503.2844	1004.55425	0.10597	5.3333E-05	-3.112	-0.0015662	-3.0061	-0.0015129	503.2826488016644	37.924	1.3398	35.032	34.741	36.081	-2.8925					63	26	4	0	0	0	0.44294	1	1435	1435		47.916	5.4411	1	384430	+		40486	22866	33408	33432	43857	43857					0.05215224728760859
NLLRDTYQ	8	Unmodified	_NLLRDTYQ_					0	0	0			REV__ENSG00000178772|ENST00000323830|CPN2	REV__ENSG00000178772|ENST00000323830|CPN2	MSMS	OvCa99_classI_Rep5	1	511.7672119140625	2	511.766906	1021.51926	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.666	1	83.666	83.166	84.166	0								0	0	0	0.30129	1	8711	8711		50.025	7.1603	1		+		40487	22078	33409	33433	43858	43858					0.009359819207929831
NLLRGIPI	8	Unmodified	_NLLRGIPI_					0	0	0			REV__nc|ENSG00000121270|Q96J66-2|ABCC11	REV__nc|ENSG00000121270|Q96J66-2|ABCC11	MULTI-SECPEP	OvCa9_classI_Rep2	2	449.2690124511719	2	448.28982	894.565087	2.9107	0.0013048	-2.7335	-0.0012254	0.17713	7.9406E-05	448.288416695151	111.9	0.93652	111.76	111.47	112.41	-0.13961					38	18	3	0	0	0	0.028476	1	10626	10626		38.806	0	1	80510	+		40488	18534	33410	33434	43859	43859					0.1135867189370856
NLLRHQVK	8	Unmodified	_NLLRHQVK_					0	0	0		nc|ENSG00000083642|Q9NTI5-2|PDS5B;ENSG00000083642|ENST00000315596|PDS5B	nc|ENSG00000083642|Q9NTI5-2|PDS5B	nc|ENSG00000083642|Q9NTI5-2|PDS5B	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.3272705078125	2	504.309075	1006.6036	-0.87585	-0.0004417	0.99145	0.0005	0.1156	5.8297E-05	504.30977240361517	26.717	0.29925	26.717	26.542	26.841	0					7	5	2	0	0	0	0.028476	1	707	707		37.159	6.6555	1	49016			40489	1697	33411	33435	43860	43860					0.10055977528224957
NLLRLVPTP	9	Unmodified	_NLLRLVPTP_					0	0	0			REV__nc|ENSG00000152332|Q8TAS1-2|UHMK1	REV__nc|ENSG00000152332|Q8TAS1-2|UHMK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.29107666015625	2	511.821484	1021.62842	0.81596	0.00041763	2.6812	0.0013723	3.4972	0.0017899	511.8231470994641	158.52	0.66357	158.52	158.23	158.89	0					32	13	3	0	0	0	0.027462	1	18615	18615		14.865	0	1	371280	+		40490	20281	33412	33436	43861	43861					0.11846612610952434
NLLSATVLL	9	Unmodified	_NLLSATVLL_					0	0	0			REV__ENSG00000242221|ENST00000406487|PSG2	REV__ENSG00000242221|ENST00000406487|PSG2	MULTI-MSMS	OvCa9_classI_Rep3	3	472.2951354980469	2	472.294768	942.574983	-0.054715	-2.5842E-05	-0.61041	-0.00028829	-0.66512	-0.00031413	472.2944757607567	95.336	1.9099	93.441	93.111	95.021	-1.8956					127	37	5	0	0	0	0.045281	1	6198	6198		122.18	0	1	2171700	+		40491	23455	33413	33437	43862	43862					0.10139815108414041
NLLSIRQNY	9	Unmodified	_NLLSIRQNY_					0	0	0			REV__ENST00000446144.2_1_15:20773467-20778061:+|nuORF	REV__ENST00000446144.2_1_15:20773467-20778061:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.831787109375	2	560.809105	1119.60366	1.2931	0.00072519	3.1985	0.0017937	4.4916	0.0025189	560.8110526987583	141.56	0.59836	141.56	141.34	141.93	0					19	11	2	0	0	0	0.027462	1	16511	16511		32.812	1.2826	1	50427	+		40492	20344	33414	33438	43863	43863					0.04863932737566756
NLLSQLIAEL	10	Unmodified	_NLLSQLIAEL_					0	0	0		UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.296142578125	2	557.329339	1112.64412	3.0096	0.0016774	-0.75902	-0.00042303	2.2506	0.0012543	557.3288496135492	107.85	0.46535	107.85	107.6	108.07	0					18	10	2	0	0	0	0.026782	1	12198	12198		30.318	7.7381	1	831130			40493	3833	33415	33439	43864	43864					0.0923085433732922
NLLSQLIAEL	10	Unmodified	_NLLSQLIAEL_					0	0	0		UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4	UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	557.329339	1112.64412	0.68907	0.00038404	-3.9959	-0.002227	-3.3068	-0.001843	557.8278291697264	108.47	1.3855	108.24	107.78	109.16	-0.22498	0.12564	-0.002088	NaN	23.523	88	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	283680			40494	3833	33415	33439							0.0923085433732922
NLLSYIYVK	9	Unmodified	_NLLSYIYVK_					0	0	0			REV__tr|A0A7D6VN82|A0A7D6VN82_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17885PE=4SV=1	REV__tr|A0A7D6VN82|A0A7D6VN82_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17885PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	556.8221435546875	2	556.82115	1111.62775	1.824	0.0010156	0.054474	3.0332E-05	1.8785	0.001046	556.8210790613065	112.22	0.91048	112.22	111.88	112.79	0					48	19	4	0	0	0	0.11471	1	12762	12762		93.195	13.483	1	1722500	+		40495	31163	33416	33440	43865	43865					0.07639773171217712
NLLTKCVDLPT	11	Unmodified	_NLLTKCVDLPT_					0	0	0			REV__nc|ENSG00000155287|Q96A46-3|SLC25A28	REV__nc|ENSG00000155287|Q96A46-3|SLC25A28	MULTI-MSMS	OvCa99_classI_Rep5	1	608.8327026367188	2	608.833931	1215.65331	1.7583	0.0010705	-3.4996	-0.0021307	-1.7413	-0.0010602	608.8316283280888	138.45	0.94801	138.45	137.93	138.88	0					55	19	4	0	0	0	0.68399	1	16114	16114		35.152	0.97948	1	261310	+		40496	20065	33417	33441	43866	43866					0.05410879631335774
NLLVGAPSGDL	11	Unmodified	_NLLVGAPSGDL_					0	0	0		nc|ENSG00000008710|P98161-2|PKD1;nc|ENSG00000008710|P98161-3|PKD1;ENSG00000008710|ENST00000262304|PKD1;ENST00000534164.5_1_16:15012355-15014181:+|nuORF;ENST00000525846.6_1_16:18443548-18445649:-|nuORF;ENST00000568591.5_1_16:2156634-2167660:-|nuORF;ENST00000532739.1_1_16:16450692-16458759:+|nuORF;ENST00000532415.5_1_16:18480742-18495490:-|nuORF	nc|ENSG00000008710|P98161-2|PKD1	nc|ENSG00000008710|P98161-2|PKD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.76513671875	2	528.290214	1054.56587	-0.13238	-6.9937E-05	0.4845	0.00025596	0.35212	0.00018602	528.2902674817188	89.711	1.4107	87.136	86.801	88.212	-2.575					57	27	3	0	0	0	0.025958	1	7809	7809		21.686	5.2126	1	346080			40497	924	33418	33442	43867	43867					0.040774217520947786
NLLVIGTD	8	Unmodified	_NLLVIGTD_					0	0	0		tr|A0A553SMT9|A0A553SMT9_NIACINH(3)-dependentNAD(+)synthetaseOS=NialliacirculansOX=1397GN=nadEPE=3SV=1	tr|A0A553SMT9|A0A553SMT9_NIACINH(3)-dependentNAD(+)synthetaseOS=NialliacirculansOX=1397GN=nadEPE=3SV=1	tr|A0A553SMT9|A0A553SMT9_NIACINH(3)-dependentNAD(+)synthetaseOS=NialliacirculansOX=1397GN=nadEPE=3SV=1	MSMS	OvCa9_classI_Rep4_	4	422.7433166503906	2	422.742368	843.470183	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.653	1	42.614	42.114	43.114	-3.0385								0	0	0	0.30129	1	2345	2345		40.573	7.057	1				40498	33872	33419	33443	43868	43868					0.04218693631867154
NLLVIHLL	8	Unmodified	_NLLVIHLL_					0	0	0		nc|ENSG00000140262|Q99081-4|TCF12	nc|ENSG00000140262|Q99081-4|TCF12	nc|ENSG00000140262|Q99081-4|TCF12	MULTI-SECPEP	OvCa99_classI_Rep5	1	468.76165771484375	2	467.807845	933.601138	-0.60152	-0.0002814	-2.4872	-0.0011635	-3.0887	-0.0014449	467.8068769018574	42.25	0.2609	42.25	42.111	42.372	0					9	5	2	0	0	0	0.028476	1	2689	2689		13.775	12.68	1	48698			40499	15052	33420	33444	43869	43869					0.13168129070572832
NLLVILLPDAN	11	Unmodified	_NLLVILLPDAN_					0	0	0		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8560180664062	2	597.858264	1193.70197	-3.1766	-0.0018991	0.037639	2.2503E-05	-3.1389	-0.0018766	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.7253	1	15251	15251		11.636	0.12491	1	436470			40500	5286	33421	33445	43870	43870					0.11287116262769814
NLLVVLTT	8	Unmodified	_NLLVVLTT_					0	0	0		nc|ENSG00000292357|P15509-4|CSF2RA	nc|ENSG00000292357|P15509-4|CSF2RA	nc|ENSG00000292357|P15509-4|CSF2RA	MULTI-MSMS	OvCa9_classI_Rep3	3	436.77459716796875	2	436.776211	871.537869	-2.6718	-0.001167	-0.40157	-0.0001754	-3.0734	-0.0013424	436.7759504548302	144.44	1.6886	143.47	143.1	144.79	-0.97299					107	33	5	0	0	0	0.75915	1	12097	12097		20.482	0	1	989010			40501	15403	33422	33446	43871	43871					0.0969614356264401
NLLWNCFI	8	Unmodified	_NLLWNCFI_					0	0	0			REV__ENST00000451450.1_9:40307429-40322734:+|nuORF	REV__ENST00000451450.1_9:40307429-40322734:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.2789916992188	2	511.760038	1021.50552	0.25296	0.00012945	-1.8295	-0.00093624	-1.5765	-0.00080679	512.2602522319119	113.23	0.54458	111.78	111.46	112	-1.4461					15	10	2	0	0	0	0.028476	1	10491	10491		26.796	0	1	14762	+		40502	25970	33423	33447	43872	43872					-0.0043696711198890625
NLLYQPQLD	9	Unmodified	_NLLYQPQLD_					0	0	0		ENST00000543590.1_1_12:123355407-123355842:-|nuORF;ENSG00000139722|ENST00000267202|VPS37B	ENST00000543590.1_1_12:123355407-123355842:-|nuORF	ENST00000543590.1_1_12:123355407-123355842:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.7322387695312	2	552.290214	1102.56587	2.2886	0.001264	3.0252	0.0016708	5.3138	0.0029347	552.2917156288029	102.87	0.34389	102.87	102.59	102.93	0					12	7	2	0	0	0	0.027453	1	11489	11489		54.776	0	1	139550			40503	4799	33424	33448	43873	43873					0.018694217520987877
NLLYVAYP	8	Unmodified	_NLLYVAYP_					0	0	0			REV__ENSG00000120436|ENST00000366834|GPR31	REV__ENSG00000120436|ENST00000366834|GPR31	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.25689697265625	2	476.760561	951.506569	1.9256	0.00091806	-3.9146	-0.0018663	-1.989	-0.00094826	476.75847213737217	82.927	0.8134	82.927	82.522	83.335	0					24	18	2	0	0	0	0.028476	1	8558	8558		57.453	12.922	1	802750	+		40504	18498	33425	33449	43874	43874					0.028875705285713593
NLMEQPIKV	9	Unmodified	_NLMEQPIKV_					0	0	0		ENSG00000173801|ENST00000393931|JUP;ENST00000589036.1_1_17:39927815-39942960:-|nuORF	ENSG00000173801|ENST00000393931|JUP	ENSG00000173801|ENST00000393931|JUP	MULTI-MSMS	OvCa99_classI_Rep5	1	536.2985229492188	2	536.296985	1070.57942	1.0026	0.00053767	1.7958	0.0009631	2.7984	0.0015008	536.2979196260079	91.024	0.64278	91.024	90.816	91.459	0					22	15	2	0	0	0	0.056671	1	9781	9781		114.89	21.699	1	5187500			40505	7415	33426	33450	43875	43875					0.04694956259686478
NLMKDLKF	8	Unmodified	_NLMKDLKF_					0	0	0		tr|A0A7D6VRZ9|A0A7D6VRZ9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20970PE=4SV=1	tr|A0A7D6VRZ9|A0A7D6VRZ9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20970PE=4SV=1	tr|A0A7D6VRZ9|A0A7D6VRZ9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20970PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.2802734375	2	504.78097	1007.54739	0.25302	0.00012772	-0.52275	-0.00026387	-0.26973	-0.00013615	504.78069632937087	46.176	0.39112	46.176	45.934	46.326	0					14	8	2	0	0	0	0.028476	1	3245	3245		88.643	29.861	1	838990			40506	34970	33427	33451	43876	43876					0.04391588576550021
NLMLGFCLL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))NLMLGFCLL_					1	0	0			REV__ENST00000358604.7_1_2:114202614-114210754:+|nuORF	REV__ENST00000358604.7_1_2:114202614-114210754:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.2786865234375	2	533.277206	1064.53986	0.87749	0.00046795	1.8161	0.00096847	2.6936	0.0014364	533.2780264230178	129.73	1.0896	128.28	127.94	129.03	-1.4565					34	21	2	0	0	0	0.47884	1	12433	12433		44.531	8.9128	1	59243	+		40507	24801	33428	33452	43877	43877					0.010171129846185067
NLMLGFCLL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))NLMLGFCLL_					1	0	0			REV__ENST00000358604.7_1_2:114202614-114210754:+|nuORF	REV__ENST00000358604.7_1_2:114202614-114210754:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	533.277206	1064.53986	0.18643	9.9418E-05	3.224	0.0017193	3.4105	0.0018187	533.2785559921388	128.55	1.1387	128.32	127.98	129.12	-0.22697	0.0066898	0.00097371	NaN	44.531	45	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58093	+		40508	24801	33428	33452							0.010171129846185067
NLMLGFCLL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))NLMLGFCLL_					1	0	0			REV__ENST00000358604.7_1_2:114202614-114210754:+|nuORF	REV__ENST00000358604.7_1_2:114202614-114210754:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	533.277206	1064.53986	1.1234	0.00059907	1.4205	0.00075751	2.5438	0.0013566	533.2777440997047	129.46	0.89082	128.35	127.94	128.83	-1.1121	0.032939	-0.00094987	NaN	44.531	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31104	+		40509	24801	33428	33452							0.010171129846185067
NLMLGFCLL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))NLMLGFCLL_					1	0	0			REV__ENST00000358604.7_1_2:114202614-114210754:+|nuORF	REV__ENST00000358604.7_1_2:114202614-114210754:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	533.277206	1064.53986	0.87749	0.00046795	1.8161	0.00096847	2.6936	0.0014364	533.2780264230178	129.73	1.0896	128.28	127.94	129.03	-1.4565	-0.039628	-0.00052794	NaN	44.531	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59243	+		40510	24801	33428	33452							0.010171129846185067
NLMLMECS	8	Unmodified	_NLMLMECS_					0	0	0		nc|ENSG00000089094|Q8NHM5-3|KDM2B;ENSG00000089094|ENST00000377071|KDM2B;nc|ENSG00000089094|Q8NHM5-4|KDM2B;nc|ENSG00000089094|Q8NHM5-2|KDM2B;ENST00000538503.5_1_12:121882954-121987523:-|nuORF	nc|ENSG00000089094|Q8NHM5-3|KDM2B	nc|ENSG00000089094|Q8NHM5-3|KDM2B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	469.80633544921875	2	470.700474	939.386395	1.3316	0.00062679	-1.6019	-0.000754	-0.27026	-0.00012721	470.69959882230756	89.668	0.90096	87.093	86.9	87.801	-2.575					19	17	2	0	0	0	0.028476	1	7783	7783		38.806	5.2906	1	33573			40511	1809	33429	33453	43878	43878					-0.08572245123366429
NLMLMECS	8	Unmodified	_NLMLMECS_					0	0	0		nc|ENSG00000089094|Q8NHM5-3|KDM2B;ENSG00000089094|ENST00000377071|KDM2B;nc|ENSG00000089094|Q8NHM5-4|KDM2B;nc|ENSG00000089094|Q8NHM5-2|KDM2B;ENST00000538503.5_1_12:121882954-121987523:-|nuORF	nc|ENSG00000089094|Q8NHM5-3|KDM2B	nc|ENSG00000089094|Q8NHM5-3|KDM2B	MULTI-MATCH	OvCa9_classI_Rep3	3		2	470.700474	939.386395	-0.0085164	-4.0087E-06	-0.23453	-0.00011039	-0.24305	-0.0001144	470.7001285528982	89.1	0.84389	86.969	86.75	87.594	-2.1309	-0.062104	0.00076967	NaN	47.916	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43650			40512	1809	33429	33453							-0.08572245123366429
NLMQDYTLSHY	11	Unmodified	_NLMQDYTLSHY_					0	0	0			REV__ENSG00000138892|ENST00000433387|TTLL8	REV__ENSG00000138892|ENST00000433387|TTLL8	MULTI-SECPEP	OvCa9_classI_Rep3	3	462.2882080078125	3	462.211577	1383.6129	-1.1643	-0.00053814	3.4034	0.0015731	2.2391	0.0010349	462.5478087400553	86.099	0.3018	83.879	83.735	84.037	-2.2204					6	5	2	0	0	0	0.025955	1	5101	5101		24.232	0.85391	1	11454	+		40513	19584	33430	33454	43879	43879					-0.06356086759069512
NLNATTAFI	9	Unmodified	_NLNATTAFI_					0	0	0			REV__tr|A0A553SFB9|A0A553SFB9_NIACIHigh-affinityhemeuptakesystemproteinIsdEOS=NialliacirculansOX=1397GN=isdEPE=3SV=1	REV__tr|A0A553SFB9|A0A553SFB9_NIACIHigh-affinityhemeuptakesystemproteinIsdEOS=NialliacirculansOX=1397GN=isdEPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	482.7585144042969	2	482.758549	963.502546	2.1392	0.0010327	1.1547	0.00055742	3.2938	0.0015901	482.7588804234167	57.803	3.1186	54.676	53.456	56.575	-3.1264					158	85	3	0	0	0	0.59983	1	1638	1638		31.955	6.5047	1	89902	+		40514	29561	33431	33455	43880	43880					0.01933481034848228
NLNDDGFTE	9	Unmodified	_NLNDDGFTE_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	OvCa9_classI_Rep2	2	512.715087890625	2	512.714536	1023.41452	1.0007	0.00051305	0.0057061	2.9256E-06	1.0064	0.00051598	512.7145226548319	129.73	1.3341	129.51	129.17	130.5	-0.22697					45	26	2	0	0	0	0.62352	1	12744	12744		29.15	4.9468	1	42470			40515	3261	33432	33456	43881	43881					-0.09625184346407423
NLNDKQIVK	9	Unmodified	_NLNDKQIVK_					0	0	0		nc|ENSG00000005156|P49916-4|LIG3;nc|ENSG00000005156|P49916-3|LIG3;nc|ENSG00000005156|P49916-2|LIG3;ENSG00000005156|ENST00000378526|LIG3;ENST00000586435.1_1_17:33316537-33318256:+|nuORF	nc|ENSG00000005156|P49916-4|LIG3	nc|ENSG00000005156|P49916-4|LIG3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.2901611328125	2	536.31148	1070.60841	-1.8154	-0.0009736	1.6194	0.00086852	-0.19593	-0.00010508	536.3122602579821	54.507	0.87158	51.259	51.03	51.901	-3.2474					23	16	2	0	0	0	0.027462	1	3389	3389		25.574	0	1	117640			40516	845	33433	33457	43882	43882					0.07592816880332975
NLNDLKGQMV	10	Unmodified	_NLNDLKGQMV_					0	0	0			REV__tr|A0A553SJE9|A0A553SJE9_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16580PE=4SV=1	REV__tr|A0A553SJE9|A0A553SJE9_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16580PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	566.2955932617188	2	566.294973	1130.57539	2.5225	0.0014285	3.0574	0.0017314	5.5799	0.0031599	566.296685628697	98.781	1.028	98.781	98.29	99.318	0					47	24	3	0	0	0	0.48198	1	10886	10886		56.721	7.185	1	2778400	+		40517	30003	33434	33458	43883	43883					0.01532866765955987
NLNDLTRVE	9	Unmodified	_NLNDLTRVE_					0	0	0			REV__TAF2|p.T931Lfs*29|1|0.07|ENSG00000064313|chr8:119756093-119756094|-/ATTTGGAAAAACAGAAATACAAATAG|frameshift_variant	REV__TAF2|p.T931Lfs*29|1|0.07|ENSG00000064313|chr8:119756093-119756094|-/ATTTGGAAAAACAGAAATACAAATAG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.7678833007812	2	537.28292	1072.55129	2.641	0.001419	3.6659	0.0019696	6.3069	0.0033886	537.2848768692711	94.246	0.55339	94.246	94.007	94.56	0					30	12	3	0	0	0	0.027462	1	10218	10218		33.922	0	1	909770	+		40518	16770	33435	33459	43884	43884					0.01791349603922754
NLNHWIFA	8	Unmodified	_NLNHWIFA_					0	0	0		ENST00000368444.7_1_6:123100760-123100832:+|nuORF	ENST00000368444.7_1_6:123100760-123100832:+|nuORF	ENST00000368444.7_1_6:123100760-123100832:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.7923278808594	2	507.761426	1013.5083	-1.093	-0.00055497	0.3053	0.00015502	-0.78767	-0.00039995	507.76137090855	48.842	0.94251	46.082	45.679	46.621	-2.7603					37	18	3	0	0	0	0.028476	1	3013	3013		19.36	0	1	56578			40519	10870	33436	33460	43885	43885					0.002086243371763885
NLNKKLIDI	9	Unmodified	_NLNKKLIDI_					0	0	0		nc|ENSG00000163535|Q562F6-2|SGO2;ENSG00000163535|ENST00000357799|SGO2;ENST00000488636.5_1_2:201399822-201407388:+|nuORF;nc|ENSG00000163535|Q562F6-3|SGO2	nc|ENSG00000163535|Q562F6-2|SGO2	nc|ENSG00000163535|Q562F6-2|SGO2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.8125610351562	2	535.832049	1069.64954	2.7041	0.001449	-2.2136	-0.0011861	0.49052	0.00026284	535.8307304751728	133.27	1.0264	131.74	131.36	132.39	-1.5257					28	20	2	0	0	0	0.027462	1	12835	12835		20.947	0	1	16415			40520	6322	33437	33461	43886	43886					0.11750577919792704
NLNKVSKI	8	Unmodified	_NLNKVSKI_					0	0	0		ENST00000475506.1_1_1:17354162-17371284:-|nuORF;ENSG00000117118|ENST00000375499|SDHB	ENST00000475506.1_1_1:17354162-17371284:-|nuORF	ENST00000475506.1_1_1:17354162-17371284:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.23883056640625	2	458.284734	914.554916	0.034262	1.5702E-05	-0.9754	-0.00044701	-0.94114	-0.00043131	458.2841346109495	56.479	0.45568	53.185	53.02	53.476	-3.2944					15	8	2	0	0	0	0.028476	1	3611	3611		44.117	7.0883	1	24210			40521	3236	33438	33462	43887	43887					0.09422064168484212
NLNPNELSI	9	Unmodified	_NLNPNELSI_					0	0	0			REV__tr|A0A7D7A1P2|A0A7D7A1P2_9CLOTGIY-YIGnucleasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16315PE=4SV=1	REV__tr|A0A7D7A1P2|A0A7D7A1P2_9CLOTGIY-YIGnucleasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16315PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	507.267578125	2	507.266739	1012.51892	-1.2853	-0.00065199	1.089	0.00055239	-0.19635	-9.9601E-05	507.2672424550914	87.214	2.7627	85.038	84.38	87.143	-2.1768					150	54	5	0	0	0	0.22621	1	5279	5279		71.877	3.0906	1	1838000	+		40522	32504	33439	33463	43888	43888					0.013165622009523759
NLNSVLLVS	9	Unmodified	_NLNSVLLVS_					0	0	0			REV__chr19:805569-806519|91|52.67|0.01|11.9|+|2|PTBP1,None|1	REV__chr19:805569-806519|91|52.67|0.01|11.9|+|2|PTBP1,None|1	MULTI-MSMS	OvCa9_classI_Rep2	2	479.7822265625	2	479.782025	957.549496	-1.4095	-0.00067624	0.88818	0.00042613	-0.5213	-0.00025011	479.7826892392015	84.442	1.5122	82.896	82.43	83.943	-1.5462					96	29	5	0	0	0	0.2422	1	7279	7279		69.628	2.134	1	364700	+		40523	15988	33440	33464	43889	43889					0.06902340586020728
NLNSWFWT	8	Unmodified	_NLNSWFWT_					0	0	0			REV__ENST00000414938.1_1_3:4792655-4792829:-|nuORF	REV__ENST00000414938.1_1_3:4792655-4792829:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.276611328125	2	534.250892	1066.48723	1.4499	0.00077461	-2.5417	-0.0013579	-1.0917	-0.00058327	534.249687341395	79.275	0.96278	79.275	78.583	79.546	0					27	23	2	0	0	0	0.028476	1	8003	8003		53.351	0	1	142960	+		40524	25526	33441	33465	43890	43890					-0.04335385762351507
NLNTHGLLE	9	Unmodified	_NLNTHGLLE_					0	0	0			REV__tr|A0A553SML6|A0A553SML6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_22835PE=4SV=1	REV__tr|A0A553SML6|A0A553SML6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_22835PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.83465576171875	2	505.766906	1009.51926	-1.79	-0.00090535	1.1982	0.00060601	-0.59185	-0.00029934	505.76736550667727	88.622	1.0432	86.02	85.73	86.773	-2.6027					39	20	3	0	0	0	0.027461	1	7618	7618		49.442	5.3247	1	66284	+		40525	30346	33442	33466	43891	43891					0.014879819208204026
NLNTHGLLE	9	Unmodified	_NLNTHGLLE_					0	0	0			REV__tr|A0A553SML6|A0A553SML6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_22835PE=4SV=1	REV__tr|A0A553SML6|A0A553SML6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_22835PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	505.766906	1009.51926	0.97414	0.00049269	-1.5762	-0.0007972	-0.60207	-0.00030451	505.76604602937107	87.496	0.68851	86.065	85.791	86.48	-1.4311	0.088517	-0.0017317	NaN	49.442	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47086	+		40526	30346	33442	33466							0.014879819208204026
NLNTHGLLE	9	Unmodified	_NLNTHGLLE_					0	0	0			REV__tr|A0A553SML6|A0A553SML6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_22835PE=4SV=1	REV__tr|A0A553SML6|A0A553SML6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_22835PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	505.766906	1009.51926	-1.0982	-0.00055542	0.81298	0.00041118	-0.2852	-0.00014424	505.76698485291996	87.975	1.2121	85.844	85.442	86.654	-2.1309	-0.13188	0.00068503	NaN	49.442	42	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74390	+		40527	30346	33442	33466							0.014879819208204026
NLNYLTPMSD	10	Unmodified	_NLNYLTPMSD_					0	0	0			REV__nc|ENSG00000102935|Q2M1K9-2|ZNF423	REV__nc|ENSG00000102935|Q2M1K9-2|ZNF423	MULTI-SECPEP	OvCa9_classI_Rep3	3	584.356201171875	2	584.271164	1166.52777	-4.6376	-0.0027096	-2.8908	-0.001689	-7.5285	-0.0043987	584.2686428130921	145.6	0.74667	144.63	144.34	145.08	-0.97301					40	14	4	0	0	0	0.026931	1	12219	12219		23.523	0	1	56950	+		40528	17583	33443	33467	43892	43892					-0.048828322248937184
NLNYVLCNL	9	Unmodified	_NLNYVLCNL_					0	0	0		ENSG00000128519|ENST00000249284|TAS2R16	ENSG00000128519|ENST00000249284|TAS2R16	ENSG00000128519|ENST00000249284|TAS2R16	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.7913208007812	2	533.273509	1064.53247	-1.7498	-0.00093312	3.3677	0.0017959	1.6179	0.00086278	533.2755321174575	81.781	1.4552	79.099	78.718	80.173	-2.683					49	29	2	0	0	0	0.027462	1	6701	6701		20.947	0	1	329680			40529	3883	33444	33468	43893	43893					0.00278096708530029
NLNYVLCNL	9	Unmodified	_NLNYVLCNL_					0	0	0		ENSG00000128519|ENST00000249284|TAS2R16	ENSG00000128519|ENST00000249284|TAS2R16	ENSG00000128519|ENST00000249284|TAS2R16	MULTI-MATCH	OvCa9_classI_Rep2	2		2	533.273509	1064.53247	-0.60267	-0.00032139	5.522	0.0029447	4.9194	0.0026234	533.275262141681	81.01	2.0772	79.361	78.466	80.543	-1.6485	0.13127	0.0019353	NaN	20.947	106	40	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194870			40530	3883	33444	33468							0.00278096708530029
NLPADTKYHLT	11	Unmodified	_NLPADTKYHLT_					0	0	0			REV__ENSG00000126602|ENST00000246957|TRAP1	REV__ENSG00000126602|ENST00000246957|TRAP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	636.8309936523438	2	636.832777	1271.651	0.048143	3.0659E-05	-1.8618	-0.0011857	-1.8136	-0.001155	636.8315313630583	20.592	1.3682	19.254	18.902	20.27	-1.3386					80	27	4	0	0	0	0.69308	1	123	123		36.447	7.2767	1	475280	+		40531	18790	33445	33469	43894	43894					0.02604167217896247
NLPDIPVPLEE	11	Unmodified	_NLPDIPVPLEE_					0	0	0		ENST00000591500.1_1_17:74068122-74075645:+|nuORF	ENST00000591500.1_1_17:74068122-74075645:+|nuORF	ENST00000591500.1_1_17:74068122-74075645:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	618.8348999023438	2	618.329536	1234.64452	1.8424	0.0011392	0.88979	0.00055019	2.7321	0.0016894	618.3299855268739	80.219	2.8219	80.219	78.791	81.613	0					156	68	3	0	0	0	0.52842	1	8198	8198		51.193	3.5354	1	1801700			40532	14120	33446	33470	43895	43895					0.03658229266534363
NLPENLGY	8	Unmodified	_NLPENLGY_					0	0	0		nc|ENSG00000116748|P23109-2|AMPD1;ENSG00000116748|ENST00000520113|AMPD1	nc|ENSG00000116748|P23109-2|AMPD1	nc|ENSG00000116748|P23109-2|AMPD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	460.2280578613281	2	460.229625	918.444697	-0.45766	-0.00021063	-4.4397	-0.0020433	-4.8973	-0.0022539	460.22746167910077	98.627	1.5937	96.249	95.921	97.515	-2.3786					78	30	4	0	0	0	0.65062	3	8762	8762;8774;8786		53.351	12.162	1	566480			40533	3205	33447	33471	43896;43897;43898	43896					-0.01778780890560938
NLPENLGY	8	Unmodified	_NLPENLGY_					0	0	0		nc|ENSG00000116748|P23109-2|AMPD1;ENSG00000116748|ENST00000520113|AMPD1	nc|ENSG00000116748|P23109-2|AMPD1	nc|ENSG00000116748|P23109-2|AMPD1	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	460.229625	918.444697	-0.48527	-0.00022334	-4.599	-0.0021166	-5.0842	-0.0023399	460.2273819679406	97.801	1.7788	96.042	95.62	97.399	-1.7595	-0.10358	-8.8764E-05	NaN	53.351	95	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	583840			40534	3205	33447	33471							-0.01778780890560938
NLPFGGQI	8	Unmodified	_NLPFGGQI_					0	0	0		tr|A0A553SIU1|A0A553SIU1_NIACIUndecaprenyl/decaprenyl-phosphatealpha-N-acetylglucosaminyl1-phosphatetransferaseOS=NialliacirculansOX=1397GN=CEQ21_15515PE=4SV=1	tr|A0A553SIU1|A0A553SIU1_NIACIUndecaprenyl/decaprenyl-phosphatealpha-N-acetylglucosaminyl1-phosphatetransferaseOS=NialliacirculansOX=1397GN=CEQ21_15515PE=4SV=1	tr|A0A553SIU1|A0A553SIU1_NIACIUndecaprenyl/decaprenyl-phosphatealpha-N-acetylglucosaminyl1-phosphatetransferaseOS=NialliacirculansOX=1397GN=CEQ21_15515PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	423.57122802734375	2	423.229428	844.444303	0.21012	8.8931E-05	-2.9738	-0.0012586	-2.7637	-0.0011697	423.2275836452911	45.016	0.88885	45.016	44.484	45.373	0					28	19	2	0	0	0	0.028476	1	3080	3080		62.978	34.724	1	177540			40535	33423	33448	33472	43899	43899					0.015858441802379275
NLPGETLLVL	10	Unmodified	_NLPGETLLVL_					0	0	0			REV__ENST00000431775.1_1_20:1141504-1141783:+|nuORF	REV__ENST00000431775.1_1_20:1141504-1141783:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.8321533203125	2	534.818607	1067.62266	-2.5489	-0.0013632	-1.6431	-0.00087877	-4.192	-0.002242	534.8175914468725	103.96	0.72019	103.96	103.73	104.45	0					27	16	2	0	0	0	0.026653	1	11606	11606		49.536	0	1	483800	+		40536	25726	33449	33473	43900	43900					0.09155469308620923
NLPIFLPRV	9	Unmodified	_NLPIFLPRV_					0	0	0		nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	MULTI-MSMS	OvCa99_classI_Rep5	1	534.832763671875	2	534.831852	1067.64915	1.4956	0.00079991	0.1201	6.4233E-05	1.6157	0.00086415	534.831859848898	130.48	0.6689	130.48	130.25	130.91	0					23	13	2	0	0	0	0.24951	1	15133	15133		68.787	10.976	1	328800			40537	3115	33450	33474	43901	43901					0.11803202990608952
NLPIFLPRV	9	Unmodified	_NLPIFLPRV_					0	0	0		nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.2501831054688	2	534.831852	1067.64915	1.1378	0.00060851	-1.3653	-0.00073022	-0.22755	-0.0001217	534.8309822387017	129.93	0.89134	128.45	128.17	129.06	-1.4779					36	17	3	0	0	0	0.027462	1	12458	12458		37.159	2.9866	1	38369			40538	3115	33450	33474	43902	43902					0.11803202990608952
NLPIFLPRV	9	Unmodified	_NLPIFLPRV_					0	0	0		nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	MULTI-MATCH	OvCa9_classI_Rep2	2		2	534.831852	1067.64915	0.26847	0.00014358	-0.5863	-0.00031357	-0.31783	-0.00016999	534.8313634801991	128.57	0.89142	128.34	128.08	128.97	-0.22697	-0.11042	0.00068585	NaN	37.159	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40565			40539	3115	33450	33474							0.11803202990608952
NLPIFLPRV	9	Unmodified	_NLPIFLPRV_					0	0	0		nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	MULTI-MATCH	OvCa9_classI_Rep3	3		2	534.831852	1067.64915	1.3562	0.00072532	-1.6424	-0.00087841	-0.28625	-0.00015309	534.8309301561769	129.67	0.84122	128.56	128.29	129.13	-1.1121	0.11206	-0.00044384	NaN	37.159	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35011			40540	3115	33450	33474							0.11803202990608952
NLPKLKALL	9	Unmodified	_NLPKLKALL_					0	0	0			REV__tr|A0A553SMN4|A0A553SMN4_NIACIHADfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_22795PE=4SV=1	REV__tr|A0A553SMN4|A0A553SMN4_NIACIHADfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_22795PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	505.3414001464844	2	505.342052	1008.66955	-0.1959	-9.8999E-05	-1.673	-0.00084545	-1.8689	-0.00094444	505.3408478582907	133.56	2.7048	133.33	132.13	134.83	-0.22697					158	54	5	0	0	0	0.62352	1	13263	13263		29.15	3.5755	1	1592700	+		40541	30352	33451	33475	43903	43903					0.16556373650416845
NLPKNQKVL	9	Unmodified	_NLPKNQKVL_					0	0	0			REV__ENST00000423414.5_1_7:130630482-130792495:-|nuORF	REV__ENST00000423414.5_1_7:130630482-130792495:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.7781982421875	2	527.324391	1052.63423	-0.48244	-0.0002544	-0.79387	-0.00041863	-1.2763	-0.00067303	527.323848739483	47.62	1.3387	47.62	47.336	48.675	0					68	30	4	0	0	0	0.027462	1	3413	3413		23.042	0	1	8259400	+		40542	25631	33452	33476	43904	43904					0.11001711122617053
NLPLGPTDPK	10	Unmodified	_NLPLGPTDPK_					0	0	0			REV__ENST00000543072.1_1_12:123849536-123850236:+|nuORF	REV__ENST00000543072.1_1_12:123849536-123850236:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.8117065429688	2	526.292756	1050.57096	-0.59061	-0.00031084	0.45767	0.00024087	-0.13294	-6.9965E-05	526.2927955280819	94.601	0.83472	93.502	93.263	94.098	-1.0995					31	16	3	0	0	0	0.026681	1	8478	8478		44.377	1.981	1	45055	+		40543	27387	33453	33477	43905	43905					0.04769725614687559
NLPLGPTDPK	10	Unmodified	_NLPLGPTDPK_					0	0	0			REV__ENST00000543072.1_1_12:123849536-123850236:+|nuORF	REV__ENST00000543072.1_1_12:123849536-123850236:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	526.292756	1050.57096	-1.2685	-0.00066761	1.5456	0.00081343	0.27707	0.00014582	526.2933481993784	95.481	1.1429	93.585	93.311	94.454	-1.8956	0.004578	0.00080055	NaN	36.447	44	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67578	+		40544	27387	33453	33477							0.04769725614687559
NLPLRPLL	8	Unmodified	_NLPLRPLL_					0	0	0		tr|A0A553STX1|A0A553STX1_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_05890PE=4SV=1	tr|A0A553STX1|A0A553STX1_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_05890PE=4SV=1	tr|A0A553STX1|A0A553STX1_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_05890PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	468.3053894042969	2	468.30547	934.596387	-1.2276	-0.00057488	0.869	0.00040696	-0.35858	-0.00016792	468.30580149557557	101.8	2.1744	101.04	100.67	102.84	-0.76401					107	43	5	0	0	0	0.71369	1	9342	9342		40.573	1.7665	1	1285400			40545	34544	33454	33478	43906	43906					0.12647244927802603
NLPQKMAHEK	10	Unmodified	_NLPQKMAHEK_					0	0	0		ENST00000374151.7_1_10:50363513-50363810:-|nuORF	ENST00000374151.7_1_10:50363513-50363810:-|nuORF	ENST00000374151.7_1_10:50363513-50363810:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	598.3211059570312	2	598.31624	1194.61793	2.3059	0.0013796	0.92681	0.00055453	3.2327	0.0019342	598.3163016858603	120.25	2.4324	120.25	119.74	122.17	0					123	55	3	0	0	0	0.6349	1	13972	13972		37.812	2.6595	1	2403400			40546	11026	33455	33479	43907	43907					0.028402618941981927
NLPRNVTNF	9	Unmodified	_NLPRNVTNF_					0	0	0			REV__ENST00000575672.1_1_16:4307718-4307946:-|nuORF	REV__ENST00000575672.1_1_16:4307718-4307946:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.80908203125	2	537.788173	1073.56179	-1.5144	-0.00081444	1.7565	0.0009446	0.24203	0.00013016	537.7889118768784	65.643	1.7054	62.157	61.84	63.546	-3.4854					78	34	4	0	0	0	0.027462	1	4731	4731		23.042	0	1	361510	+		40547	27777	33456	33480	43908	43908					0.027953770490512397
NLPRSSAA	8	Unmodified	_NLPRSSAA_					0	0	0			REV__ENST00000507668.6_1_5:79438905-79439037:-|nuORF	REV__ENST00000507668.6_1_5:79438905-79439037:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	408.22210693359375	2	408.222134	814.429715	-0.027736	-1.1322E-05	0.46194	0.00018857	0.4342	0.00017725	408.22219810033897	33.657	1.3881	30.947	30.571	31.959	-2.7097					59	27	3	0	0	0	0.62474	1	1222	1222		58.782	0	1	367700	+		40548	26902	33457	33481	43909	43909					0.015077720320959997
NLPTNVAPLIV	11	Unmodified	_NLPTNVAPLIV_					0	0	0		ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8425903320312	2	575.845156	1149.67576	-2.8608	-0.0016474	-0.58729	-0.00033819	-3.4481	-0.0019856	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.72064	1	14793	14793		22.58	2.5829	1	356230			40549	2727	33458	33482	43910	43910					0.10690847091291289
NLPTNVAPLIV	11	Unmodified	_NLPTNVAPLIV_					0	0	0		ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8433837890625	2	575.845156	1149.67576	-4.018	-0.0023138	0.54994	0.00031668	-3.4681	-0.0019971	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.71789	1	12044	12044		23.523	0.48021	1	445630			40550	2727	33458	33482	43911	43911					0.10690847091291289
NLPTNVAPLIV	11	Unmodified	_NLPTNVAPLIV_					0	0	0		ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8432006835938	2	575.845156	1149.67576	-0.33973	-0.00019563	-2.5857	-0.0014889	-2.9254	-0.0016846	575.8433458482052	142.38	3.7668	140.93	139.05	142.82	-1.4532					179	72	3	0	0	0	0.60323	2	14042	13913;14042		44.377	12.847	1	165140			40551	2727	33458	33482	43912;43913	43913					0.10690847091291289
NLPTNVAPLIV	11	Unmodified	_NLPTNVAPLIV_					0	0	0		ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8435668945312	2	575.845156	1149.67576	-1.5734	-0.00090602	-1.7064	-0.00098265	-3.2798	-0.0018887	575.8439449675558	145.55	4.7888	144.12	142.78	147.57	-1.4357					360	93	6	0	0	0	0.7046	2	14204	14204;14309		28.081	0.19925	1	565210			40552	2727	33458	33482	43914;43915	43914					0.10690847091291289
NLPVPVYLRPL	11	Unmodified	_NLPVPVYLRPL_					0	0	0		nc|ENSG00000008294|O60271-9|SPAG9;nc|ENSG00000008294|O60271-4|SPAG9;nc|ENSG00000008294|O60271-2|SPAG9;ENSG00000008294|ENST00000262013|SPAG9;ENST00000514613.5_1_17:49067015-49156972:-|nuORF;nc|ENSG00000008294|O60271-5|SPAG9;nc|ENSG00000008294|O60271-3|SPAG9	nc|ENSG00000008294|O60271-9|SPAG9	nc|ENSG00000008294|O60271-9|SPAG9	MULTI-MSMS	OvCa9_classI_Rep2	2	640.8895263671875	2	640.889898	1279.76524	-0.17045	-0.00010924	0.2933	0.00018797	0.12285	7.8731E-05	640.8899760073222	130.96	1.1409	130.73	130.4	131.54	-0.22697					67	22	4	0	0	0	0.67529	1	12897	12897		37.812	3.639	1	368320			40553	915	33459	33483	43916	43916					0.13655101770632427
NLPYGRLED	9	Unmodified	_NLPYGRLED_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	OvCa99_classI_Rep5	1	538.77490234375	2	538.772188	1075.52982	-1.809	-0.00097462	3.2056	0.0017271	1.3966	0.00075247	538.773703163375	104.41	1.3582	104.41	103.55	104.91	0					66	31	3	0	0	0	0.53483	1	11658	11658		39.253	0.44669	1	957010			40554	1888	33460	33484	43917	43917					-0.004920354247587966
NLQFGQWVG	9	Unmodified	_NLQFGQWVG_					0	0	0		ENST00000574946.5_1_17:6025582-6025684:+|nuORF	ENST00000574946.5_1_17:6025582-6025684:+|nuORF	ENST00000574946.5_1_17:6025582-6025684:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	524.76611328125	2	524.764166	1047.51378	1.2156	0.00063789	1.8477	0.0009696	3.0633	0.0016075	524.7650401246628	128.53	2.025	128.31	127.54	129.56	-0.22697					74	40	3	0	0	0	0.58665	1	12618	12618		33.516	6.7195	1	156760			40555	13936	33461	33485	43918	43918					-0.008076968709929133
NLQFILRPG	9	Unmodified	_NLQFILRPG_					0	0	0			REV__ENST00000555971.1_1_15:93325338-93352935:-|nuORF	REV__ENST00000555971.1_1_15:93325338-93352935:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	530.3060913085938	2	529.311284	1056.60801	-0.95572	-0.00050587	-1.2114	-0.00064122	-2.1671	-0.0011471	529.31026241493	58.872	1.5355	56.092	55.588	57.124	-2.7801					50	29	2	0	0	0	0.027456	1	4277	4277		30.504	0	1	170390	+		40556	27553	33462	33486	43919	43919					0.08197441951142537
NLQKVIATI	9	Unmodified	_NLQKVIATI_					0	0	0			REV__ENST00000558513.1_1_15:59750825-59752579:+|nuORF	REV__ENST00000558513.1_1_15:59750825-59752579:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.8222351074219	2	500.313492	998.612431	2.0234	0.0010123	0.40737	0.00020381	2.4307	0.0012161	500.31342974688664	110.45	0.53618	110.45	110.22	110.76	0					20	11	2	0	0	0	0.027433	1	12544	12544		37.812	3.639	1	426790	+		40557	20522	33463	33487	43920	43920					0.1130690637405678
NLQKVLDIP	9	Unmodified	_NLQKVLDIP_					0	0	0		tr|A0A7D6VQA8|A0A7D6VQA8_9CLOTFlppilusassemblycomplexATPasecomponentTadAOS=ClostridiumintestinaleOX=36845GN=tadAPE=3SV=1	tr|A0A7D6VQA8|A0A7D6VQA8_9CLOTFlppilusassemblycomplexATPasecomponentTadAOS=ClostridiumintestinaleOX=36845GN=tadAPE=3SV=1	tr|A0A7D6VQA8|A0A7D6VQA8_9CLOTFlppilusassemblycomplexATPasecomponentTadAOS=ClostridiumintestinaleOX=36845GN=tadAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.79345703125	2	520.310949	1038.60735	-0.72918	-0.0003794	1.081	0.00056243	0.35177	0.00018303	520.3112724711415	120.91	0.69054	120.71	120.31	121	-0.19718					20	13	2	0	0	0	0.027402	1	11662	11662		66.429	7.6473	1	11945			40558	34835	33464	33488	43921	43921					0.08958602511438585
NLQKVLDIP	9	Unmodified	_NLQKVLDIP_					0	0	0		tr|A0A7D6VQA8|A0A7D6VQA8_9CLOTFlppilusassemblycomplexATPasecomponentTadAOS=ClostridiumintestinaleOX=36845GN=tadAPE=3SV=1	tr|A0A7D6VQA8|A0A7D6VQA8_9CLOTFlppilusassemblycomplexATPasecomponentTadAOS=ClostridiumintestinaleOX=36845GN=tadAPE=3SV=1	tr|A0A7D6VQA8|A0A7D6VQA8_9CLOTFlppilusassemblycomplexATPasecomponentTadAOS=ClostridiumintestinaleOX=36845GN=tadAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.3067626953125	2	520.310949	1038.60735	-0.32553	-0.00016938	-0.90923	-0.00047308	-1.2348	-0.00064246	520.3104716501707	89.184	2.8598	87.053	86.315	89.175	-2.1309					144	56	5	0	0	0	0.027462	1	5602	5602		27.882	0	1	326570			40559	34835	33464	33488	43922	43922					0.08958602511438585
NLQLLETVVQ	10	Unmodified	_NLQLLETVVQ_					0	0	0			REV__ENSG00000188554|ENST00000590996|NBR1	REV__ENSG00000188554|ENST00000590996|NBR1	MULTI-MSMS	OvCa99_classI_Rep5	1	578.834228515625	2	578.832246	1155.64994	-0.68792	-0.00039819	1.5112	0.00087474	0.8233	0.00047655	578.8330228783194	67.72	0.70387	67.72	67.448	68.152	0					45	17	4	0	0	0	0.42962	1	6344	6344		64.207	2.0999	1	2991200	+		40560	22717	33465	33489	43923	43923					0.07833952849000525
NLQLLETVVQ	10	Unmodified	_NLQLLETVVQ_					0	0	0			REV__ENSG00000188554|ENST00000590996|NBR1	REV__ENSG00000188554|ENST00000590996|NBR1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	578.832246	1155.64994	-0.68792	-0.00039819	1.5112	0.00087474	0.8233	0.00047655	578.8330228783194	67.72	0.70387	67.72	67.448	68.152	0	-0.08778	-0.00086063	NaN	64.207	45	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2991200	+		40561	22717	33465	33489							0.07833952849000525
NLQLLETVVQ	10	Unmodified	_NLQLLETVVQ_					0	0	0			REV__ENSG00000188554|ENST00000590996|NBR1	REV__ENSG00000188554|ENST00000590996|NBR1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	578.832246	1155.64994	-0.28461	-0.00016474	3.0729	0.0017787	2.7883	0.0016139	578.833831478108	70.395	1.0199	67.825	67.563	68.583	-2.5707	0.016626	0.00094724	NaN	64.207	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37533	+		40562	22717	33465	33489							0.07833952849000525
NLQLLETVVQ	10	Unmodified	_NLQLLETVVQ_					0	0	0			REV__ENSG00000188554|ENST00000590996|NBR1	REV__ENSG00000188554|ENST00000590996|NBR1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	578.832246	1155.64994	-0.42857	-0.00024807	4.7691	0.0027605	4.3405	0.0025124	578.8348638871943	70.599	0.51473	67.879	67.699	68.214	-2.7196	0.071154	0.0029109	NaN	64.207	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20225	+		40563	22717	33465	33489							0.07833952849000525
NLQNQMYSH	9	Unmodified	_NLQNQMYSH_					0	0	0		ENST00000582147.1_1_18:334691-500598:-|nuORF;ENSG00000158270|ENST00000400256|COLEC12	ENST00000582147.1_1_18:334691-500598:-|nuORF	ENST00000582147.1_1_18:334691-500598:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.3290405273438	2	567.753472	1133.49239	1.1896	0.00067541	-2.0535	-0.0011659	-0.86392	-0.00049049	567.7521415682758	91.068	0.356	91.068	90.857	91.213	0					11	8	2	0	0	0	0.027462	1	9786	9786		26.693	6.6961	1	240600			40564	5941	33466	33490	43924	43924					-0.06901449962037987
NLQQHINGY	9	Unmodified	_NLQQHINGY_					0	0	0			REV__ENSG00000156140|ENST00000286657|ADAMTS3	REV__ENSG00000156140|ENST00000286657|ADAMTS3	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.7999877929688	2	543.76998	1085.52541	-0.35968	-0.00019558	4.1899	0.0022784	3.8303	0.0020828	543.7722957032288	61.223	1.063	61.223	60.602	61.665	0					47	24	3	0	0	0	0.027456	1	5358	5358		47.916	0	1	2886400	+		40565	20462	33467	33491	43925	43925					-0.013934998476543115
NLQRTKVRY	9	Unmodified	_NLQRTKVRY_					0	0	0		ENSG00000131686|ENST00000377443|CA6;nc|ENSG00000131686|P23280-2|CA6	ENSG00000131686|ENST00000377443|CA6	ENSG00000131686|ENST00000377443|CA6	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3363647460938	2	589.343646	1176.67274	-0.99558	-0.00058674	-0.19072	-0.0001124	-1.1863	-0.00069914	589.3433618627441	145.15	3.8411	143.72	141.74	145.58	-1.4357					179	73	4	0	0	0	0.5811	1	14267	14267		34.173	11.593	1	92509			40566	4082	33468	33492	43926	43926					0.09147016757151505
NLREELAF	8	Unmodified	_NLREELAF_					0	0	0		CON__Q9Z2K1;CON__Q3ZAW8	CON__Q9Z2K1	CON__Q9Z2K1	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.7626037597656	2	496.263999	990.513445	-0.33898	-0.00016822	3.15	0.0015632	2.811	0.001395	496.2654107398258	61.105	2.4857	61.105	60.772	63.257	0					107	59	2	0	0	0	0.028476	1	5654	5654		14.664	0.88877	1	832080		+	40567	651	33469	33493	43927	43927					0.01780883409139733
NLRETNLD	8	Unmodified	_NLRETNLD_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|2|fusion;PPFIBP1-VIM|1|fusion	ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|1|fusion	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa99_classI_Rep5	1	487.7501525878906	2	487.748713	973.482873	-0.51789	-0.0002526	0.20081	9.7946E-05	-0.31708	-0.00015466	487.74867639590553	48.521	1.4312	48.521	48.204	49.635	0					65	32	4	0	0	0	0.064388	1	3559	3559		152.47	19.002	1	3318700			40568	1049;15514	33470	33494	43928	43928					-0.00492894975911895
NLRFSSVTL	9	Unmodified	_NLRFSSVTL_					0	0	0			REV__ENST00000528808.1_1_11:60150614-60157189:+|nuORF	REV__ENST00000528808.1_1_11:60150614-60157189:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.3099975585938	2	518.792924	1035.57129	0.83615	0.00043379	0.51967	0.0002696	1.3558	0.00070339	518.7933491552743	144.6	0.48315	144.6	144.4	144.89	0					14	9	2	0	0	0	0.027461	1	16918	16918		32.812	3.6629	1	21932	+		40569	27177	33471	33495	43929	43929					0.05493145334594374
NLRGSGYGQ	9	Unmodified	_NLRGSGYGQ_					0	0	0		ENSG00000157350|ENST00000342907|ST3GAL2;ST3GAL2-COG4|3|fusion;ST3GAL2-COG4|2|fusion	ENSG00000157350|ENST00000342907|ST3GAL2	ENSG00000157350|ENST00000342907|ST3GAL2	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.23956298828125	2	476.235773	950.456993	1.7638	0.00083998	3.8008	0.0018101	5.5646	0.0026501	476.2374795957137	85.185	1.8695	82.539	82.263	84.133	-2.6463					74	37	3	0	0	0	0.38969	1	7161	7161		52.937	5.0211	1	228660			40570	5888	33472	33496	43930	43930					-0.02021744427520389
NLRGSGYGQ	9	Unmodified	_NLRGSGYGQ_					0	0	0		ENSG00000157350|ENST00000342907|ST3GAL2;ST3GAL2-COG4|3|fusion;ST3GAL2-COG4|2|fusion	ENSG00000157350|ENST00000342907|ST3GAL2	ENSG00000157350|ENST00000342907|ST3GAL2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	476.235773	950.456993	-1.1081	-0.00052771	5.4607	0.0026006	4.3526	0.0020728	476.23822573020243	84.206	1.8701	82.659	82.072	83.943	-1.5462	0.060396	0.00018427	NaN	52.937	83	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158510			40571	5888	33472	33496							-0.02021744427520389
NLRHLPTLG	9	Unmodified	_NLRHLPTLG_					0	0	0		chr15:66664452-66711668|88|12.44|0.6|4.37|+|0|LINC01169,SMAD6|1	chr15:66664452-66711668|88|12.44|0.6|4.37|+|0|LINC01169,SMAD6|1	chr15:66664452-66711668|88|12.44|0.6|4.37|+|0|LINC01169,SMAD6|1	MULTI-MSMS	OvCa9_classI_Rep3	3	510.8009338378906	2	510.801083	1019.58761	0.80057	0.00040893	-0.96174	-0.00049126	-0.16116	-8.2323E-05	510.8004762883351	67.815	1.2016	64.928	64.639	65.841	-2.8873					58	23	4	0	0	0	0.62352	1	2894	2894		29.15	1.2673	1	205880			40572	361	33473	33497	43931	43931					0.07860271291326626
NLRHLPTLG	9	Unmodified	_NLRHLPTLG_					0	0	0		chr15:66664452-66711668|88|12.44|0.6|4.37|+|0|LINC01169,SMAD6|1	chr15:66664452-66711668|88|12.44|0.6|4.37|+|0|LINC01169,SMAD6|1	chr15:66664452-66711668|88|12.44|0.6|4.37|+|0|LINC01169,SMAD6|1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	510.801083	1019.58761	-0.91699	-0.0004684	0.46741	0.00023876	-0.44958	-0.00022964	510.8012178044891	67.607	1.2339	64.946	64.545	65.779	-2.661	-0.028786	0.001151	NaN	29.15	50	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143530			40573	361	33473	33497							0.07860271291326626
NLRHLPTLG	9	Unmodified	_NLRHLPTLG_					0	0	0		chr15:66664452-66711668|88|12.44|0.6|4.37|+|0|LINC01169,SMAD6|1	chr15:66664452-66711668|88|12.44|0.6|4.37|+|0|LINC01169,SMAD6|1	chr15:66664452-66711668|88|12.44|0.6|4.37|+|0|LINC01169,SMAD6|1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	510.801083	1019.58761	0.15004	7.6641E-05	-0.58753	-0.00030011	-0.43749	-0.00022347	510.8006513951258	68.541	1.2796	65.051	64.769	66.048	-3.4902	0.075801	7.3295E-05	NaN	29.15	46	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213250			40574	361	33473	33497							0.07860271291326626
NLRHTKQIF	9	Unmodified	_NLRHTKQIF_					0	0	0		ENST00000360635.7_1_2:9545974-9546166:-|nuORF	ENST00000360635.7_1_2:9545974-9546166:-|nuORF	ENST00000360635.7_1_2:9545974-9546166:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	579.304443359375	2	578.832914	1155.65128	-0.9266	-0.00053635	1.3942	0.00080702	0.46761	0.00027067	578.8340293252284	87.265	0.24984	84.638	84.448	84.698	-2.6269					6	4	2	0	0	0	0.027462	1	7389	7389		19.997	0	1	12751			40575	10776	33474	33498	43932	43932					0.07967631728411106
NLRILKHVM	9	Unmodified	_NLRILKHVM_					0	0	0			REV__tr|A0A7D7AAY4|A0A7D7AAY4_9CLOTRhoterminationfactorN-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13170PE=4SV=1	REV__tr|A0A7D7AAY4|A0A7D7AAY4_9CLOTRhoterminationfactorN-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13170PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3436279296875	2	562.342061	1122.66957	1.2434	0.00069921	1.201	0.00067537	2.4444	0.0013746	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.55588	1	13865	13865		37.159	5.2042	1	683710	+		40576	32672	33475	33499	43933	43933					0.11314050378769025
NLRKQRVGKH	10	Unmodified	_NLRKQRVGKH_					0	0	0			REV__nc|ENSG00000117461|Q92569-3|PIK3R3	REV__nc|ENSG00000117461|Q92569-3|PIK3R3	MULTI-MSMS	OvCa99_classI_Rep5	1	412.5851135253906	3	412.5863	1234.73707	-0.081468	-3.3613E-05	-3.3745	-0.0013923	-3.456	-0.0014259	412.5847411118509	36.68	0.7177	36.68	36.487	37.205	0					34	15	4	0	0	0	0.73938	1	1964	1964		26.063	0.17167	1	529450	+		40577	18352	33476	33500	43934	43934					0.12909216633943288
NLRQYKEIR	9	Unmodified	_NLRQYKEIR_					0	0	0		ENSG00000188782|ENST00000456354|CATSPER4;nc|ENSG00000188782|Q7RTX7-2|CATSPER4	ENSG00000188782|ENST00000456354|CATSPER4	ENSG00000188782|ENST00000456354|CATSPER4	MULTI-SECPEP	OvCa99_classI_Rep5	1	609.8707885742188	2	610.348929	1218.6833	-0.55279	-0.0003374	2.3228	0.0014177	1.77	0.0010803	610.3501651684495	59.373	0.34489	59.373	59.228	59.573	0					19	8	3	0	0	0	0.027417	1	5122	5122		62.107	0	1	696040			40578	8501	33477	33501	43935	43935					0.08270999411547564
NLRRHVQFLI	10	Unmodified	_NLRRHVQFLI_					0	0	0			REV__ENST00000460472.6_3_2:179604374-179604491:-|nuORF	REV__ENST00000460472.6_3_2:179604374-179604491:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	432.96221923828125	3	432.594684	1294.76222	2.1333	0.00092286	-2.2557	-0.0009758	-0.12238	-5.2941E-05	432.5936216974035	61.792	1.2605	58.724	58.363	59.624	-3.0685					59	31	2	0	0	0	0.02717	1	2157	2157		12.207	1.1099	1	32501	+		40579	26083	33478	33502	43936	43936					0.12663271436531431
NLRRHVQFLI	10	Unmodified	_NLRRHVQFLI_					0	0	0			REV__ENST00000460472.6_3_2:179604374-179604491:-|nuORF	REV__ENST00000460472.6_3_2:179604374-179604491:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		3	432.594684	1294.76222	0.25474	0.0001102	-5.0482	-0.0021838	-4.7935	-0.0020736	432.5923236137607	58.592	0.20755	58.592	58.488	58.696	0	-0.06581	-0.003478	NaN	11.636	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97310	+		40580	26083	33478	33502							0.12663271436531431
NLRRMAFW	8	Unmodified	_NLRRMAFW_					0	0	0		tr|A0A553SSP3|A0A553SSP3_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_03305PE=4SV=1	tr|A0A553SSP3|A0A553SSP3_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_03305PE=4SV=1	tr|A0A553SSP3|A0A553SSP3_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_03305PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.8271484375	2	547.289828	1092.5651	0.70805	0.00038751	-3.0501	-0.0016693	-2.3421	-0.0012818	547.2889357835986	158.25	1.2914	158.25	157.6	158.89	0					45	26	3	0	0	0	0.028476	1	18488	18488		13.775	0	1	82119			40581	34398	33479	33503	43937	43937					0.022523486220734412
NLRRNARG	8	Unmodified	_NLRRNARG_					0	0	0			REV__ENST00000378103.7_3_9:35748839-35749166:-|nuORF	REV__ENST00000378103.7_3_9:35748839-35749166:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.2582702636719	2	478.778474	955.542394	-0.50848	-0.00024345	3.1756	0.0015204	2.6672	0.001277	478.7797471787062	37.829	0.77325	37.829	37.621	38.394	0					23	16	2	0	0	0	0.028476	1	2166	2166		31.955	3.8734	1	447290	+		40582	25134	33480	33504	43938	43938					0.0628446554879929
NLRRYVAI	8	Unmodified	_NLRRYVAI_					0	0	0			REV__tr|A0A553SUM4|A0A553SUM4_NIACICysteinehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_02135PE=3SV=1	REV__tr|A0A553SUM4|A0A553SUM4_NIACICysteinehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_02135PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.7496643066406	2	502.803626	1003.5927	-0.18339	-9.2207E-05	-0.24916	-0.00012528	-0.43254	-0.00021748	502.80360110201264	60.483	0.79404	57.053	56.7	57.494	-3.43					22	15	2	0	0	0	0.028476	1	4073	4073		26.796	0	1	22286	+		40583	31097	33481	33505	43939	43939					0.09104575153935457
NLRTALIFGGF	11	Unmodified	_NLRTALIFGGF_					0	0	0		ENSG00000250317|ENST00000506197|SMIM20;nc|ENSG00000250317|Q8N5G0-2|SMIM20	ENSG00000250317|ENST00000506197|SMIM20	ENSG00000250317|ENST00000506197|SMIM20	MSMS	OvCa99_classI_Rep5	1	604.8448486328125	2	604.842948	1207.67134	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.9	1	132.9	132.4	133.4	0								0	0	0	0.14736	1	15449	15449		56.632	12.515	1				40584	9418	33482	33506	43940	43940					0.07581382668354308
NLRVEPIQP	9	Unmodified	_NLRVEPIQP_					0	0	0		tr|A0A553SQT6|A0A553SQT6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07180PE=4SV=1	tr|A0A553SQT6|A0A553SQT6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07180PE=4SV=1	tr|A0A553SQT6|A0A553SQT6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07180PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.2959594726562	2	533.306198	1064.59784	-1.0144	-0.000541	1.9772	0.0010544	0.96276	0.00051344	533.3067130460594	70.181	1.3034	67.61	66.915	68.218	-2.5707					36	25	2	0	0	0	0.027462	1	5646	5646		16.473	8.7829	1	61281			40585	34196	33483	33507	43941	43941					0.06812834225888764
NLSDQILQV	9	Unmodified	_NLSDQILQV_					0	0	0		nc|ENSG00000007402|Q9NY47-4|CACNA2D2;ENSG00000007402|ENST00000424201|CACNA2D2;nc|ENSG00000007402|Q9NY47-3|CACNA2D2;nc|ENSG00000007402|Q9NY47|CACNA2D2;nc|ENSG00000007402|Q9NY47-5|CACNA2D2;chr3:50364976-50365075|350|17.85|0.52|5.09|-|ENST00000423994|CACNA2D2,CACNA2D2	nc|ENSG00000007402|Q9NY47-4|CACNA2D2	nc|ENSG00000007402|Q9NY47-4|CACNA2D2	MSMS	OvCa9_classI_Rep2	2	515.2823486328125	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.28	1	105.85	105.35	106.35	-0.43642								0	0	0	0.028596	1	9892	9892		113.41	1.0007	1				40586	487	33484	33508	43942	43942					0.03709135235044414
NLSDQILQV	9	Unmodified	_NLSDQILQV_					0	0	0		nc|ENSG00000007402|Q9NY47-4|CACNA2D2;ENSG00000007402|ENST00000424201|CACNA2D2;nc|ENSG00000007402|Q9NY47-3|CACNA2D2;nc|ENSG00000007402|Q9NY47|CACNA2D2;nc|ENSG00000007402|Q9NY47-5|CACNA2D2;chr3:50364976-50365075|350|17.85|0.52|5.09|-|ENST00000423994|CACNA2D2,CACNA2D2	nc|ENSG00000007402|Q9NY47-4|CACNA2D2	nc|ENSG00000007402|Q9NY47-4|CACNA2D2	MSMS	OvCa9_classI_Rep2	2	515.2820434570312	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.64	1	106.33	105.83	106.83	-0.30836								0	0	0	0.16939	1	9935	9935		52.937	8.5595	1				40587	487	33484	33508	43943	43943					0.03709135235044414
NLSEQTQPQ	9	Unmodified	_NLSEQTQPQ_					0	0	0			REV__ENST00000559272.1_1_15:79756054-79760723:+|nuORF	REV__ENST00000559272.1_1_15:79756054-79760723:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.8189697265625	2	522.751453	1043.48835	0.75856	0.00039654	4.1623	0.0021759	4.9209	0.0025724	522.7534563116594	81.811	1.0902	80.162	79.818	80.908	-1.6485					24	20	2	0	0	0	0.027462	1	6966	6966		14.137	0.36179	1	19395	+		40588	27595	33485	33509	43944	43944					-0.031652161840838744
NLSEQVIMISM	11	Unmodified	_NLSEQVIMISM_					0	0	0		tr|A0A7D6ZZX0|A0A7D6ZZX0_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_21880PE=3SV=1	tr|A0A7D6ZZX0|A0A7D6ZZX0_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_21880PE=3SV=1	tr|A0A7D6ZZX0|A0A7D6ZZX0_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_21880PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	632.8215942382812	2	632.817424	1263.62029	2.263	0.001432	3.6342	0.0022998	5.8971	0.0037318	632.8197056367402	83.846	0.84287	83.846	83.545	84.388	0					57	19	4	0	0	0	0.41398	1	8761	8761		60.118	1.8883	1	4251800			40589	35977	33486	33510	43945	43945					-0.0009707048300242604
NLSGCLLKP	9	Unmodified	_NLSGCLLKP_					0	0	0		ENST00000515408.5_1_5:112349223-112349271:+|nuORF	ENST00000515408.5_1_5:112349223-112349271:+|nuORF	ENST00000515408.5_1_5:112349223-112349271:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.28033447265625	2	472.76532	943.516088	-0.0064101	-3.0305E-06	-2.9681	-0.0014032	-2.9745	-0.0014063	472.7637405482881	73.035	0.27755	73.035	72.877	73.155	0					10	6	2	0	0	0	0.027455	1	7145	7145		34.173	0	1	172890			40590	13043	33487	33511	43946	43946					0.04207015542442605
NLSGWRPNED	10	Unmodified	_NLSGWRPNED_					0	0	0		ENSG00000138834|ENST00000610761|MAPK8IP3;nc|ENSG00000138834|Q9UPT6|MAPK8IP3	ENSG00000138834|ENST00000610761|MAPK8IP3	ENSG00000138834|ENST00000610761|MAPK8IP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.32763671875	2	594.275626	1186.5367	1.1532	0.0006853	4.1049	0.0024394	5.258	0.0031247	594.7796031899967	154.67	0.25592	154.67	154.47	154.72	0					6	4	2	0	0	0	0.026681	1	18127	18127		36.447	0	1	9847.7			40591	4737	33488	33512	43947	43947					-0.049107225442185154
NLSKKLAEV	9	Unmodified	_NLSKKLAEV_					0	0	0			REV__ENSG00000137831|ENST00000322954|UACA	REV__ENSG00000137831|ENST00000322954|UACA	MULTI-MSMS	OvCa9_classI_Rep3	3	501.3038635253906	2	501.303124	1000.5917	-0.9915	-0.00049704	-0.83248	-0.00041732	-1.824	-0.00091437	501.3025213002704	100.17	2.4317	98.562	97.909	100.34	-1.6053					84	47	3	0	0	0	0.1944	1	6800	6800		77.318	0	1	349550	+		40592	19486	33489	33513	43948	43948					0.09142315994381534
NLSKKLAEV	9	Unmodified	_NLSKKLAEV_					0	0	0			REV__ENSG00000137831|ENST00000322954|UACA	REV__ENSG00000137831|ENST00000322954|UACA	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	501.303124	1000.5917	-1.2153	-0.00060923	1.0717	0.00053725	-0.1436	-7.1985E-05	501.3034674423479	99.272	2.0867	98.379	97.707	99.794	-0.89305	-0.12115	0.0003108	NaN	77.318	95	41	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	344590	+		40593	19486	33489	33513							0.09142315994381534
NLSKKLAEV	9	Unmodified	_NLSKKLAEV_					0	0	0			REV__ENSG00000137831|ENST00000322954|UACA	REV__ENSG00000137831|ENST00000322954|UACA	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	501.303124	1000.5917	-0.9915	-0.00049704	-0.83248	-0.00041732	-1.824	-0.00091437	501.3025213002704	100.17	2.4317	98.562	97.909	100.34	-1.6053	0.0617	-0.0015983	NaN	77.318	84	47	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	349550	+		40594	19486	33489	33513							0.09142315994381534
NLSKKQKP	8	Unmodified	_NLSKKQKP_					0	0	0		ENST00000475379.1_1_14:55408210-55411247:-|nuORF;nc|ENSG00000198554|O75717-2|WDHD1;ENSG00000198554|ENST00000360586|WDHD1	ENST00000475379.1_1_14:55408210-55411247:-|nuORF	ENST00000475379.1_1_14:55408210-55411247:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.2666015625	2	471.790184	941.565815	2.7072	0.0012772	-0.67893	-0.00032031	2.0283	0.00095692	471.7898142974739	75.388	1.3187	75.388	74.962	76.28	0					78	32	4	0	0	0	0.028476	1	7619	7619		25.45	15.745	1	21316000			40595	8826	33490	33514	43949	43949					0.09269466542764349
NLSKNLQEKI	10	Unmodified	_NLSKNLQEKI_					0	0	0		tr|A0A7D6VTG8|A0A7D6VTG8_9CLOTDNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10795PE=4SV=1	tr|A0A7D6VTG8|A0A7D6VTG8_9CLOTDNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10795PE=4SV=1	tr|A0A7D6VTG8|A0A7D6VTG8_9CLOTDNA-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10795PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.3378295898438	2	593.843145	1185.67174	-0.56076	-0.000333	1.9231	0.001142	1.3623	0.000809	594.3455738114178	50.617	0.4427	50.617	50.332	50.775	0					14	9	2	0	0	0	0.02706	1	3871	3871		37.812	0	1	359140			40596	35114	33491	33515	43950	43950					0.086327575975929
NLSLEKSKSSP	11	Unmodified	_NLSLEKSKSSP_					0	0	0			REV__ENST00000462803.5_1_9:82286241-82340056:+|nuORF	REV__ENST00000462803.5_1_9:82286241-82340056:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	594.82421875	2	595.324785	1188.63502	-0.58953	-0.00035096	-1.8524	-0.0011028	-2.4419	-0.0014537	595.3236003485372	86.549	1.612	84.372	83.63	85.241	-2.1768					76	31	4	0	0	0	0.025714	1	5178	5178		25.126	0	1	861020	+		40597	17829	33492	33516	43951	43951					0.04824460981012635
NLSMIFIAVL	10	Unmodified	_NLSMIFIAVL_					0	0	0			REV__ENSG00000135953|ENST00000258436|MFSD9	REV__ENSG00000135953|ENST00000258436|MFSD9	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.2216186523438	2	560.825378	1119.6362	2.0556	0.0011528	0.24489	0.00013734	2.3005	0.0012902	560.825245702728	112.04	0.41673	112.04	111.83	112.25	0					11	8	2	0	0	0	0.026734	1	12733	12733		39.253	7.298	1	70617	+		40598	19340	33493	33517	43952	43952					0.08117003816209944
NLSRTLTGSP	10	Unmodified	_NLSRTLTGSP_					0	0	0			REV__ENST00000361367.6_1_11:10772894-10774273:+|nuORF	REV__ENST00000361367.6_1_11:10772894-10774273:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.811767578125	2	523.285463	1044.55637	-0.32259	-0.00016881	0.50771	0.00026568	0.18511	9.6868E-05	523.2852853113758	59.974	1.0415	57.203	56.725	57.766	-2.7702					33	19	3	0	0	0	0.02676	1	4441	4441		49.536	12.508	1	37755	+		40599	24849	33494	33518	43953	43953					0.03587653466570373
NLSSGLDAVQ	10	Unmodified	_NLSSGLDAVQ_					0	0	0			REV__ENSG00000124486|ENST00000378308|USP9X	REV__ENSG00000124486|ENST00000378308|USP9X	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.3034973144531	2	502.256371	1002.49819	-1.5303	-0.00076859	2.1371	0.0010734	0.60679	0.00030477	502.2568177755553	45.697	0.47175	42.659	42.386	42.858	-3.0385					15	8	3	0	0	0	0.02676	1	2353	2353		33.922	6.0394	1	26879	+		40600	18688	33495	33519	43954	43954					-0.0029602817870681974
NLSSNKLWTV	10	Unmodified	_NLSSNKLWTV_					0	0	0		ENSG00000126861|ENST00000247271|OMG	ENSG00000126861|ENST00000247271|OMG	ENSG00000126861|ENST00000247271|OMG	MULTI-MSMS	OvCa99_classI_Rep5	1	581.31787109375	2	581.316763	1160.61897	2.0416	0.0011868	-2.693	-0.0015655	-0.65138	-0.00037866	581.31513373811	80.509	0.67654	80.509	80.234	80.91	0					29	15	2	0	0	0	0.47142	1	8274	8274		58.23	6.8945	1	3227800			40601	3807	33496	33520	43955	43955					0.04508799534755781
NLSSSISESQS	11	Unmodified	_NLSSSISESQS_					0	0	0			REV__ENSG00000148143|ENST00000277225|ZNF462	REV__ENSG00000148143|ENST00000277225|ZNF462	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.783203125	2	569.764757	1137.51496	-0.66122	-0.00037674	3.217	0.001833	2.5558	0.0014562	569.7668744557726	35.092	0.24015	35.092	34.957	35.198	0					6	4	2	0	0	0	0.019133	1	1754	1754		91.265	22.419	1	24117	+		40602	20090	33497	33521	43956	43956					-0.04829572083417588
NLSVPQVATI	10	Unmodified	_NLSVPQVATI_					0	0	0		ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	ENSG00000164946|ENST00000380880|FREM1	MULTI-MSMS	OvCa9_classI_Rep2	2	521.3005981445312	2	521.300581	1040.58661	-0.71731	-0.00037394	1.5301	0.00079764	0.81278	0.0004237	521.3013451951931	49.755	2.2298	46.995	46.325	48.555	-2.7603					109	44	4	0	0	0	0.70152	1	3156	3156		30.318	3.6248	1	840970			40603	6504	33498	33522	43957	43957					0.06794012131763338
NLTFGKLCHCS	11	Unmodified	_NLTFGKLCHCS_					0	0	0			REV__nc|ENSG00000132561|O00339-4|MATN2	REV__nc|ENSG00000132561|O00339-4|MATN2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	610.8185424804688	2	611.789001	1221.56345	0.53394	0.00032666	4.1296	0.0025264	4.6635	0.0028531	611.7914601954649	47.971	0.45675	44.863	44.684	45.141	-3.1077					16	8	2	0	0	0	0.025912	1	2608	2608		16.717	0.24424	1	33843	+		40604	19087	33499	33523	43958	43958					-0.03847073248880406
NLTFGKLCHCS	11	Unmodified	_NLTFGKLCHCS_					0	0	0			REV__nc|ENSG00000132561|O00339-4|MATN2	REV__nc|ENSG00000132561|O00339-4|MATN2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	611.789001	1221.56345	-1.1042	-0.00067557	6.0434	0.0036973	4.9392	0.0030217	611.7928654369516	47.62	0.1979	44.91	44.836	45.034	-2.7097	0.023625	0.00072615	NaN	16.717	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9262.8	+		40605	19087	33499	33523							-0.03847073248880406
NLTHPQRG	8	Unmodified	_NLTHPQRG_					0	0	0		tr|A0A7D6VTY0|A0A7D6VTY0_9CLOTAminoacidadenylationdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18690PE=4SV=1	tr|A0A7D6VTY0|A0A7D6VTY0_9CLOTAminoacidadenylationdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18690PE=4SV=1	tr|A0A7D6VTY0|A0A7D6VTY0_9CLOTAminoacidadenylationdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18690PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	461.7439880371094	2	461.746308	921.478063	-0.9628	-0.00044457	-2.3391	-0.0010801	-3.3019	-0.0015246	461.74509928976033	117.12	2.1532	115.76	115.46	117.61	-1.3645					88	40	4	0	0	0	0.68714	1	10971	10971		45.952	3.4775	1	521240			40606	35150	33500	33524	43959	43959					0.014182656719981424
NLTKEKIK	8	Unmodified	_NLTKEKIK_					0	0	0			REV__tr|A0A7D6ZSU2|A0A7D6ZSU2_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_17340PE=4SV=1	REV__tr|A0A7D6ZSU2|A0A7D6ZSU2_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_17340PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.2803039550781	2	487.305667	972.596781	-0.19021	-9.2688E-05	1.898	0.00092492	1.7078	0.00083224	487.3062308252085	94.277	0.89896	93.178	92.853	93.752	-1.0995					25	17	3	0	0	0	0.028476	1	8463	8463		56.721	1.9447	1	16454	+		40607	32192	33501	33525	43960	43960					0.10938619856983678
NLTKIKALE	9	Unmodified	_NLTKIKALE_					0	0	0		tr|A0A7D7A1Z2|A0A7D7A1Z2_9CLOTHDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06300PE=4SV=1	tr|A0A7D7A1Z2|A0A7D7A1Z2_9CLOTHDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06300PE=4SV=1	tr|A0A7D7A1Z2|A0A7D7A1Z2_9CLOTHDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06300PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.7674560546875	2	515.318774	1028.623	-0.038607	-1.9895E-05	-1.0656	-0.0005491	-1.1042	-0.000569	515.317985971304	59.481	1.5343	56.089	55.451	56.985	-3.392					50	30	3	0	0	0	0.027358	1	4015	4015		56.434	5.2411	1	90757			40608	36054	33502	33526	43961	43961					0.10982889028446152
NLTKIKALE	9	Unmodified	_NLTKIKALE_					0	0	0		tr|A0A7D7A1Z2|A0A7D7A1Z2_9CLOTHDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06300PE=4SV=1	tr|A0A7D7A1Z2|A0A7D7A1Z2_9CLOTHDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06300PE=4SV=1	tr|A0A7D7A1Z2|A0A7D7A1Z2_9CLOTHDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06300PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.318774	1028.623	-0.26274	-0.0001354	0.11855	6.109E-05	-0.1442	-7.4307E-05	515.3187181211193	58.83	1.1267	56.05	55.588	56.715	-2.7801	-0.019399	0.00032014	NaN	56.434	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45690			40609	36054	33502	33526							0.10982889028446152
NLTKLAEVFV	10	Unmodified	_NLTKLAEVFV_					0	0	0			REV__tr|A0A7D6VTZ8|A0A7D6VTZ8_9CLOTArgininebiosynthesisbifunctionalproteinArgJOS=ClostridiumintestinaleOX=36845GN=argJPE=3SV=1	REV__tr|A0A7D6VTZ8|A0A7D6VTZ8_9CLOTArgininebiosynthesisbifunctionalproteinArgJOS=ClostridiumintestinaleOX=36845GN=argJPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.329833984375	2	567.331882	1132.64921	-0.48412	-0.00027465	-3.1025	-0.0017602	-3.5866	-0.0020348	567.3299446868054	145.54	4.8872	144.11	142.68	147.57	-1.4357					247	95	4	0	0	0	0.69073	1	14310	14310		31.53	1.2121	1	208760	+		40610	31641	33503	33527	43962	43962					0.08819158199935373
NLTKTQLLN	9	Unmodified	_NLTKTQLLN_					0	0	0		nc|ENSG00000163092|A4UGR9-2|XIRP2;nc|ENSG00000163092|A4UGR9-3|XIRP2;nc|ENSG00000163092|A4UGR9|XIRP2;ENSG00000163092|ENST00000409195|XIRP2	nc|ENSG00000163092|A4UGR9-2|XIRP2	nc|ENSG00000163092|A4UGR9-2|XIRP2	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.3368530273438	2	522.806031	1043.59751	0.45468	0.00023771	2.0886	0.0010919	2.5433	0.0013296	522.8070779622964	114.09	1.0354	113.97	113.71	114.75	-0.11777					35	20	4	0	0	0	0.027462	1	10878	10878		19.997	0	1	37959			40611	6265	33504	33528	43963	43963					0.07745414506075576
NLTLISILF	9	Unmodified	_NLTLISILF_					0	0	0			REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|18|1|sense	REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|18|1|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3193359375	2	517.318243	1032.62193	0.83877	0.00043391	2.1662	0.0011206	3.005	0.0015545	517.3191831149613	112.7	1.9244	112.58	112.28	114.2	-0.12174					94	38	4	0	0	0	0.16562	1	10678	10678		82.241	12.613	1	430350	+		40612	28467	33505	33529	43964	43964					0.10692674659571821
NLTMNVQLV	9	Unmodified	_NLTMNVQLV_					0	0	0		ENSG00000187492|ENST00000412678|CDHR4	ENSG00000187492|ENST00000412678|CDHR4	ENSG00000187492|ENST00000412678|CDHR4	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7992553710938	2	516.281334	1030.54812	-0.15439	-7.9707E-05	2.1318	0.0011006	1.9775	0.0010209	516.2855168300304	46.54	0.52005	46.54	46.242	46.762	0					19	11	3	0	0	0	0.027462	1	3305	3305		27.882	2.3082	1	113440			40613	8403	33506	33530	43965	43965					0.03406383225569698
NLTNGILEL	9	Unmodified	_NLTNGILEL_					0	0	0		tr|A0A7D6VTH6|A0A7D6VTH6_9CLOTM48familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09035PE=3SV=1	tr|A0A7D6VTH6|A0A7D6VTH6_9CLOTM48familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09035PE=3SV=1	tr|A0A7D6VTH6|A0A7D6VTH6_9CLOTM48familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09035PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	493.7811279296875	2	493.779482	985.544411	0.83088	0.00041027	1.3381	0.00066071	2.1689	0.001071	493.78007496366774	90.881	0.51434	90.881	90.698	91.213	0					26	12	3	0	0	0	0.37135	1	9788	9788		54.776	0	1	2821300			40614	35118	33507	33531	43966	43966					0.05106036723384477
NLTPAAGR	8	Unmodified	_NLTPAAGR_					0	0	0		ENST00000396504.6_1_22:41924591-41924693:-|nuORF	ENST00000396504.6_1_22:41924591-41924693:-|nuORF	ENST00000396504.6_1_22:41924591-41924693:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.2008056640625	2	400.224677	798.434801	0.91986	0.00036815	-0.47338	-0.00018946	0.44648	0.00017869	400.22440618663853	38.142	0.54867	38.142	37.983	38.531	0					18	11	3	0	0	0	0.028476	1	2183	2183		1.0954	0	1	103440			40615	11316	33508	33532	43967	43967					0.027520758947161994
NLTPILPAK	9	Unmodified	_NLTPILPAK_					0	0	0			REV__nc|ENSG00000146842|Q96SK2-2|TMEM209	REV__nc|ENSG00000146842|Q96SK2-2|TMEM209	MULTI-SECPEP	OvCa9_classI_Rep3	3	484.7748107910156	2	483.80276	965.590967	-1.2407	-0.00060025	3.5324	0.001709	2.2917	0.0011087	483.8029852685631	91.729	0.7068	89.705	89.382	90.089	-2.0241					35	13	4	0	0	0	0.027462	1	5812	5812		36.447	2.2742	1	81115	+		40616	20031	33509	33533	43968	43968					0.10679521345332432
NLTPILPAK	9	Unmodified	_NLTPILPAK_					0	0	0			REV__nc|ENSG00000146842|Q96SK2-2|TMEM209	REV__nc|ENSG00000146842|Q96SK2-2|TMEM209	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.7758483886719	2	483.80276	965.590967	-0.82819	-0.00040068	2.3641	0.0011438	1.5359	0.00074307	483.80281931058147	92.277	0.71103	89.734	89.415	90.126	-2.5425					30	13	3	0	0	0	0.027462	1	8036	8036		31.53	0	1	71835	+		40617	20031	33509	33533	43969	43969					0.10679521345332432
NLTPITRKLN	10	Unmodified	_NLTPITRKLN_					0	0	0			REV__ENSG00000138646|ENST00000264350|HERC5	REV__ENSG00000138646|ENST00000264350|HERC5	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.8139038085938	2	585.35368	1168.69281	1.0178	0.00059577	4.1223	0.002413	5.1401	0.0030088	585.3557150107855	131.18	0.7106	131.18	130.82	131.53	0					26	14	3	0	0	0	0.027028	1	15262	15262		24.519	1.9395	1	257600	+		40618	19553	33510	33534	43970	43970					0.11520767697106749
NLTPKPLRR	9	Unmodified	_NLTPKPLRR_					0	0	0		ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1	ENSG00000097007|ENST00000318560|ABL1	ENSG00000097007|ENST00000318560|ABL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.3408813476562	2	547.843282	1093.67201	-1.5321	-0.00083933	-0.89362	-0.00048957	-2.4257	-0.0013289	547.8426338015213	72.701	2.9908	69.305	68.424	71.415	-3.3961					128	61	3	0	0	0	0.42676	1	5582	5582		49.442	7.0454	1	1444700			40619	1953	33511	33535	43971	43971					0.12892222108075657
NLTRVLALY	9	Unmodified	_NLTRVLALY_					0	0	0		nc|ENSG00000143303|Q96FB5-2|METTL25B;ENSG00000143303|ENST00000368216|METTL25B	nc|ENSG00000143303|Q96FB5-2|METTL25B	nc|ENSG00000143303|Q96FB5-2|METTL25B	MSMS	OvCa9_classI_Rep4_	4	531.8174438476562	2	531.818941	1061.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	160.15	1	158.54	158.04	159.04	-1.6101								0	0	0	0.21446	1	15814	15814		24.203	0	1				40620	5030	33512	33536	43972	43972					0.09498308748334239
NLTSSRGLLK	10	Unmodified	_NLTSSRGLLK_					0	0	0		nc|ENSG00000211452|P49895-3|DIO1	nc|ENSG00000211452|P49895-3|DIO1	nc|ENSG00000211452|P49895-3|DIO1	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8296508789062	2	544.824755	1087.63496	2.7549	0.0015009	2.9112	0.0015861	5.6661	0.0030871	544.8261114723678	87.962	0.71288	87.962	87.586	88.298	0					38	16	3	0	0	0	0.026688	1	9294	9294		40.778	7.9657	1	1242300			40621	15282	33513	33537	43973	43973					0.09464505771666154
NLTTKVRNV	9	Unmodified	_NLTTKVRNV_					0	0	0		tr|A0A7D6ZVZ3|A0A7D6ZVZ3_9CLOTRodshape-determiningproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06075PE=4SV=1	tr|A0A7D6ZVZ3|A0A7D6ZVZ3_9CLOTRodshape-determiningproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06075PE=4SV=1	tr|A0A7D6ZVZ3|A0A7D6ZVZ3_9CLOTRodshape-determiningproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06075PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.8123168945312	2	522.811648	1043.60874	-4.1208	-0.0021544	3.8712	0.0020239	-0.24958	-0.00013048	522.8135945226888	152.85	1.1432	151.42	151.08	152.23	-1.435					63	27	4	0	0	0	0.5811	1	15130	15130		34.173	5.023	1	215640			40622	35821	33514	33538	43974	43974					0.08868236600187629
NLTVEAKAR	9	Unmodified	_NLTVEAKAR_					0	0	0			REV__ENSG00000143297|ENST00000361835|FCRL5	REV__ENSG00000143297|ENST00000361835|FCRL5	MULTI-MSMS	OvCa99_classI_Rep5	1	501.2901611328125	2	501.290548	1000.56654	-0.33228	-0.00016657	-0.43348	-0.0002173	-0.76576	-0.00038387	501.2903358073717	35.788	0.55293	35.788	35.566	36.119	0					16	11	2	0	0	0	0.40818	1	1836	1836		51.193	5.2204	1	610810	+		40623	19827	33515	33539	43975	43975					0.06628261191792717
NLTVRETLAF	10	Unmodified	_NLTVRETLAF_					0	0	0		nc|ENSG00000143921|Q9H221-2|ABCG8;ENSG00000143921|ENST00000272286|ABCG8	nc|ENSG00000143921|Q9H221-2|ABCG8	nc|ENSG00000143921|Q9H221-2|ABCG8	MULTI-MSMS	OvCa99_classI_Rep5	1	582.3242797851562	2	582.324588	1162.63462	0.72093	0.00041981	1.1168	0.00065034	1.8377	0.0010702	582.3251315150402	155.85	2.0208	155.85	155.43	157.45	0					85	39	3	0	0	0	0.47142	2	18272	18250;18272		58.23	17.181	1	85370			40624	5107	33516	33540	43976;43977	43977					0.059810860518155096
NLTYLLGKPD	10	Unmodified	_NLTYLLGKPD_					0	0	0			REV__tr|A0A7D7A2J6|A0A7D7A2J6_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20195PE=3SV=1	REV__tr|A0A7D7A2J6|A0A7D7A2J6_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20195PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.349853515625	2	567.313689	1132.61282	-0.057606	-3.2681E-05	3.5899	0.0020366	3.5323	0.0020039	567.3152905203314	92.192	0.86403	89.65	89.212	90.076	-2.5425					37	16	3	0	0	0	0.026906	1	8038	8038		33.922	11.962	1	111430	+		40625	32539	33517	33541	43978	43978					0.051822813032458726
NLVAKMKKVM	10	Oxidation (M)	_NLVAKMKKVM(Oxidation (M))_		NLVAKM(0.179)KKVM(0.821)		NLVAKM(-6.6)KKVM(6.6)	0	0	1		nc|ENSG00000146833|Q9C037|TRIM4;ENSG00000146833|ENST00000349062|TRIM4;nc|ENSG00000146833|Q9C037-3|TRIM4	nc|ENSG00000146833|Q9C037|TRIM4	nc|ENSG00000146833|Q9C037|TRIM4	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3425903320312	2	589.343412	1176.67227	-3.0463	-0.0017953	2.2949	0.0013525	-0.75141	-0.00044284	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.6104	1	14916	14916		40.778	11.608	2	272220			40626	5308	33518	33542	43979	43979		173			0.09100137721384272
NLVAKPKP	8	Unmodified	_NLVAKPKP_					0	0	0			REV__ENSG00000108839|ENST00000251535|ALOX12	REV__ENSG00000108839|ENST00000251535|ALOX12	MULTI-MSMS	OvCa9_classI_Rep4_	4	433.77716064453125	2	433.776545	865.538538	1.3486	0.00058498	-1.5043	-0.00065254	-0.15575	-6.7562E-05	433.775716822817	84.294	1.329	81.632	81.265	82.594	-2.6629					64	27	3	0	0	0	0.67745	1	7073	7073		47.916	0	1	776900	+		40627	17906	33519	33543	43980	43980					0.10038983002368695
NLVARYWKK	9	Unmodified	_NLVARYWKK_					0	0	0		tr|A0A553SQG2|A0A553SQG2_NIACIReversetranscriptasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07645PE=4SV=1	tr|A0A553SQG2|A0A553SQG2_NIACIReversetranscriptasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07645PE=4SV=1	tr|A0A553SQG2|A0A553SQG2_NIACIReversetranscriptasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07645PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	589.34228515625	2	589.345658	1176.67676	-3.0463	-0.0017953	-1.5159	-0.00089337	-4.5622	-0.0026887	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.59983	1	15034	15034		31.955	1.4512	1	272220			40628	34156	33520	33544	43981	43981					0.0954910625082448
NLVDAAKAY	9	Unmodified	_NLVDAAKAY_					0	0	0		nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1;ENST00000556959.1_1_14:72196918-72202208:+|nuORF	nc|ENSG00000197555|O43166-3|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.2930908203125	2	482.758549	963.502546	-0.88888	-0.00042912	0.78757	0.0003802	-0.10132	-4.8912E-05	482.758884332369	95.028	1.2555	92.559	92.21	93.465	-2.4685					47	24	3	0	0	0	0.027433	1	8384	8384		60.972	13.056	1	99647			40629	8721	33521	33545	43982	43982					0.01933481034848228
NLVFALGVVSA	11	Unmodified	_NLVFALGVVSA_					0	0	0			REV__KIDINS220|p.H1622Qfs*20|1|0.07|ENSG00000134313|chr2:8731170-8731171|-/CACTTTGTTGGCAATTTTTAAAGCCC|frameshift_variant	REV__KIDINS220|p.H1622Qfs*20|1|0.07|ENSG00000134313|chr2:8731170-8731171|-/CACTTTGTTGGCAATTTTTAAAGCCC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3162841796875	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.71498	1	14337	14337		24.519	1.4767	1	202430	+		40630	19193	33522	33546	43983	43983					0.08222889028479585
NLVFEIKR	8	Unmodified	_NLVFEIKR_					0	0	0			REV__ENSG00000183747|ENST00000573854|ACSM2A	REV__ENSG00000183747|ENST00000573854|ACSM2A	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8035888671875	2	509.805834	1017.59712	-0.41042	-0.00020923	-3.6368	-0.0018541	-4.0473	-0.0020633	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.73626	1	13616	13616		33.516	3.0119	1	150140	+		40631	16824	33523	33547	43984	43984					0.08902039576844345
NLVFEIKRPY	10	Unmodified	_NLVFEIKRPY_					0	0	0			REV__ENSG00000183747|ENST00000573854|ACSM2A	REV__ENSG00000183747|ENST00000573854|ACSM2A	MULTI-MSMS	OvCa9_classI_Rep4_	4	639.8648681640625	2	639.86388	1277.71321	4.3799	0.0028026	-0.94327	-0.00060356	3.4367	0.002199	639.8629162928355	131.74	1.3693	130.23	129.87	131.24	-1.5014					52	27	3	0	0	0	0.52439	1	12663	12663		51.193	3.5354	1	39599	+		40632	16824	33524	33548	43985	43985					0.08545938356905936
NLVFEIKRPY	10	Unmodified	_NLVFEIKRPY_					0	0	0			REV__ENSG00000183747|ENST00000573854|ACSM2A	REV__ENSG00000183747|ENST00000573854|ACSM2A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	639.86388	1277.71321	-0.046923	-3.0024E-05	3.4134	0.0021841	3.3665	0.0021541	639.8658613791298	130.43	0.84367	130.2	129.91	130.75	-0.22696	-0.039841	0.0014475	NaN	51.193	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34076	+		40633	16824	33524	33548							0.08545938356905936
NLVFEIKRPY	10	Unmodified	_NLVFEIKRPY_					0	0	0			REV__ENSG00000183747|ENST00000573854|ACSM2A	REV__ENSG00000183747|ENST00000573854|ACSM2A	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	639.86388	1277.71321	0.046644	2.9846E-05	3.3326	0.0021324	3.3793	0.0021623	640.3676740956611	131.41	0.88071	130.28	130.06	130.94	-1.1249	0.043641	0.0013442	NaN	51.193	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21149	+		40634	16824	33524	33548							0.08545938356905936
NLVFEIKRPY	10	Unmodified	_NLVFEIKRPY_					0	0	0			REV__ENSG00000183747|ENST00000573854|ACSM2A	REV__ENSG00000183747|ENST00000573854|ACSM2A	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	639.86388	1277.71321	4.3799	0.0028026	-0.94327	-0.00060356	3.4367	0.002199	639.8629162928355	131.74	1.3693	130.23	129.87	131.24	-1.5014	-0.0038004	-0.0041278	NaN	51.193	52	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39599	+		40635	16824	33524	33548							0.08545938356905936
NLVGTKRVS	9	Unmodified	_NLVGTKRVS_					0	0	0		nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;ENST00000472512.2_1_1:62586792-62593784:+|nuORF;ENST00000484937.5_1_1:62582831-62626723:+|nuORF	nc|ENSG00000132849|Q8NI35|PATJ	nc|ENSG00000132849|Q8NI35|PATJ	MULTI-MSMS	OvCa9_classI_Rep2	2	487.2925109863281	2	487.293091	972.571629	-1.5876	-0.0007736	1.367	0.00066614	-0.22054	-0.00010747	487.2937066188987	143.42	1.0862	143.19	142.8	143.89	-0.22696					37	21	2	0	0	0	0.70177	1	14417	14417		17.365	0	1	43295			40636	4180	33525	33549	43986	43986					0.08424565054428967
NLVHKFIE	8	Unmodified	_NLVHKFIE_					0	0	0		ENST00000229329.6_1_12:22208105-22208192:+|nuORF	ENST00000229329.6_1_12:22208105-22208192:+|nuORF	ENST00000229329.6_1_12:22208105-22208192:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.75299072265625	2	500.284734	998.554916	-0.083618	-4.1833E-05	-1.3156	-0.00065816	-1.3992	-0.00069999	500.28386883486695	98.122	1.1646	95.743	95.267	96.431	-2.3786					40	22	2	0	0	0	0.028476	1	8727	8727		33.516	0	1	82828			40637	9717	33526	33550	43987	43987					0.05558064168474175
NLVKCFHKA	9	Unmodified	_NLVKCFHKA_					0	0	0			REV__ENSG00000158477|ENST00000289429|CD1A	REV__ENSG00000158477|ENST00000289429|CD1A	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7959594726562	2	530.292037	1058.56952	-0.67461	-0.00035774	-3.062	-0.0016238	-3.7366	-0.0019815	530.2903283680096	36.234	0.41351	36.234	36.074	36.487	0					15	8	2	0	0	0	0.027462	1	1879	1879		15.642	0	1	1001700	+		40638	20566	33527	33551	43988	43988					0.04257813044955583
NLVKEPIHI	9	Unmodified	_NLVKEPIHI_					0	0	0			REV__tr|A0A7D7A385|A0A7D7A385_9CLOTNa+/H+antiporterOS=ClostridiumintestinaleOX=36845GN=HZF06_11690PE=3SV=1	REV__tr|A0A7D7A385|A0A7D7A385_9CLOTNa+/H+antiporterOS=ClostridiumintestinaleOX=36845GN=HZF06_11690PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8160400390625	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.52083	1	13863	13863		40.573	3.4135	1	166960	+		40639	32573	33528	33552	43989	43989					0.09498308748334239
NLVKIKGNE	9	Unmodified	_NLVKIKGNE_					0	0	0			REV__ENST00000463719.1_1_3:195298097-195306332:-|nuORF	REV__ENST00000463719.1_1_3:195298097-195306332:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.6207275390625	2	507.800749	1013.58694	0.21909	0.00011126	-2.1977	-0.001116	-1.9786	-0.0010047	507.79947874393673	57.658	0.25324	57.658	57.522	57.775	0					9	5	2	0	0	0	0.027462	1	4870	4870		8.6937	0	1	128720	+		40640	15554	33529	33553	43990	43990					0.0806943185162936
NLVKLIDGR	9	Unmodified	_NLVKLIDGR_					0	0	0			REV__nc|ENSG00000177885|P62993-2|GRB2	REV__nc|ENSG00000177885|P62993-2|GRB2	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.7717895507812	2	514.316566	1026.61858	-0.73687	-0.00037898	0.54343	0.0002795	-0.19344	-9.9489E-05	514.3167274331832	50.784	0.75085	50.784	50.156	50.907	0					28	16	2	0	0	0	0.027462	1	3830	3830		29.15	13.508	1	181820	+		40641	22030	33530	33554	43991	43991					0.10633424605589425
NLVKQNLQN	9	Unmodified	_NLVKQNLQN_					0	0	0		AGTPBP1|p.Y651Ifs*14|1|0.12|ENSG00000135049|chr9:85632726-85632726|A/-|frameshift_variant;nc|ENSG00000135049|Q9UPW5-2|AGTPBP1;ENSG00000135049|ENST00000357081|AGTPBP1;nc|ENSG00000135049|Q9UPW5-3|AGTPBP1;ENST00000376080.2_1_9:88272482-88307688:-|nuORF;ENST00000376081.8_1_9:88270186-88327448:-|nuORF	AGTPBP1|p.Y651Ifs*14|1|0.12|ENSG00000135049|chr9:85632726-85632726|A/-|frameshift_variant	AGTPBP1|p.Y651Ifs*14|1|0.12|ENSG00000135049|chr9:85632726-85632726|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	534.811767578125	2	535.80128	1069.58801	-0.32695	-0.00017518	-1.8793	-0.001007	-2.2063	-0.0011821	536.3028905759954	92.637	0.46374	90.675	90.468	90.932	-1.9617					12	9	2	0	0	0	0.027462	1	5856	5856		37.159	0	1	34823			40642	51	33531	33555	43992	43992					0.05599646220525756
NLVKSSSKR	9	Unmodified	_NLVKSSSKR_					0	0	0		ENSG00000126016|ENST00000371959|AMOT;nc|ENSG00000126016|Q4VCS5-2|AMOT	ENSG00000126016|ENST00000371959|AMOT	ENSG00000126016|ENST00000371959|AMOT	MULTI-MSMS	OvCa9_classI_Rep3	3	509.8041687011719	2	509.803823	1017.59309	-1.31	-0.00066782	1.0243	0.0005222	-0.28565	-0.00014562	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.64427	1	11270	11270		26.693	4.9906	1	99460			40643	3763	33532	33556	43993	43993					0.08499950083148633
NLVKTRRRAVG	11	Unmodified	_NLVKTRRRAVG_					0	0	0		ENST00000431356.1_1_10:37284146-37284269:+|nuORF;ENST00000569976.5_1_16:18806770-18812824:-|nuORF;nc|ENSG00000170540|Q15041-2|ARL6IP1;ENSG00000170540|ENST00000304414|ARL6IP1	ENST00000431356.1_1_10:37284146-37284269:+|nuORF	ENST00000431356.1_1_10:37284146-37284269:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	635.4004516601562	2	635.396744	1268.77894	-0.17446	-0.00011085	2.2247	0.0014136	2.0502	0.0013027	635.3980894634163	70.382	1.5379	70.382	70.13	71.668	0					91	38	5	0	0	0	0.21275	1	6760	6760		78.264	2.0941	1	13258000			40644	7116	33533	33557	43994	43994					0.1552977232242938
NLVKTRRRAVG	11	Unmodified	_NLVKTRRRAVG_					0	0	0		ENST00000431356.1_1_10:37284146-37284269:+|nuORF;ENST00000569976.5_1_16:18806770-18812824:-|nuORF;nc|ENSG00000170540|Q15041-2|ARL6IP1;ENSG00000170540|ENST00000304414|ARL6IP1	ENST00000431356.1_1_10:37284146-37284269:+|nuORF	ENST00000431356.1_1_10:37284146-37284269:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	635.396744	1268.77894	-0.66056	-0.00041972	2.2073	0.0014025	1.5468	0.00098281	635.398007682704	73.503	1.1455	70.107	69.833	70.978	-3.3961	-0.13778	-1.5437E-05	NaN	78.264	56	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	406330			40645	7116	33533	33557							0.1552977232242938
NLVLLGLPI	9	Unmodified	_NLVLLGLPI_					0	0	0		ENSG00000233757|ENST00000425953|ZNF892	ENSG00000233757|ENST00000425953|ZNF892	ENSG00000233757|ENST00000425953|ZNF892	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.7867431640625	2	476.315503	950.616454	-0.89096	-0.00042438	-1.2105	-0.00057657	-2.1014	-0.0010009	476.3148655942885	27.617	0.40045	27.617	27.39	27.791	0					12	7	2	0	0	0	0.027462	1	806	806		26.796	1.3459	1	84019			40646	9296	33534	33558	43995	43995					0.13916995867759852
NLVLLWLL	8	Unmodified	_NLVLLWLL_					0	0	0			REV__ENST00000514654.5_1_3:130694284-130698131:+|nuORF	REV__ENST00000514654.5_1_3:130694284-130698131:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.7650451660156	2	492.318046	982.621539	-0.041819	-2.0588E-05	-1.4984	-0.00073769	-1.5402	-0.00075828	492.3171288199197	101.61	0.46535	101.61	101.36	101.82	0					22	10	3	0	0	0	0.028476	1	11309	11309		28.254	6.5519	1	556800	+		40647	26990	33535	33559	43996	43996					0.1295329973038406
NLVLVGNEEKV	11	Unmodified	_NLVLVGNEEKV_					0	0	0			REV__ENSG00000155660|ENST00000652332|PDIA4	REV__ENSG00000155660|ENST00000652332|PDIA4	MSMS	OvCa99_classI_Rep5	1	607.3463745117188	2	607.342978	1212.6714	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.29	1	123.29	122.79	123.79	0								0	0	0	0.17657	1	14212	14212		49.536	5.8853	1		+		40648	20434	33536	33560	43997	43997					0.07357337877715509
NLVSFLETV	9	Unmodified	_NLVSFLETV_					0	0	0		ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	ENSG00000128791|ENST00000262120|TWSG1	MULTI-MSMS	OvCa99_classI_Rep5	1	511.28302001953125	2	511.281857	1020.54916	0.76203	0.00038961	2.9711	0.0015191	3.7332	0.0019087	511.28359279939923	159.27	1.1198	159.27	159.04	160.16	0					40	22	3	0	0	0	0.070405	1	18663	18663		107.01	30.233	1	166970			40649	3903	33537	33561	43998	43998					0.039709208661633966
NLVSHLLSRR	10	Unmodified	_NLVSHLLSRR_					0	0	0			REV__SVA_D_dup188|chr2:71160475-71162096:+|4.671785527912675|0.3567656144168134|3.71|429.0|33|3|sense	REV__SVA_D_dup188|chr2:71160475-71162096:+|4.671785527912675|0.3567656144168134|3.71|429.0|33|3|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8560180664062	2	597.856921	1193.69929	-1.9041	-0.0011384	0.86104	0.00051478	-1.0431	-0.00062361	597.8573316932594	144.83	3.9651	143.86	141.71	145.68	-0.97301					192	79	4	0	0	0	0.75313	1	12128	12128		24.519	0	1	187110	+		40650	29479	33538	33562	43999	43999					0.11018705648439209
NLVSSVRSAGP	11	Unmodified	_NLVSSVRSAGP_					0	0	0			REV__ENST00000539693.1_1_19:19312736-19313791:-|nuORF	REV__ENST00000539693.1_1_19:19312736-19313791:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.3465576171875	2	543.798737	1085.58292	-1.1203	-0.00060922	-2.1694	-0.0011797	-3.2897	-0.0017889	544.2981808838259	65.592	0.2898	62.107	61.987	62.276	-3.4854					6	5	2	0	0	0	0.025673	1	4715	4715		47.96	1.9873	1	17905	+		40651	27337	33539	33563	44000	44000					0.04355342357916925
NLVSVAGLSV	10	Unmodified	_NLVSVAGLSV_					0	0	0		ENSG00000197841|ENST00000492450|ZNF181	ENSG00000197841|ENST00000492450|ZNF181	ENSG00000197841|ENST00000492450|ZNF181	MULTI-MSMS	OvCa9_classI_Rep2	2	479.78271484375	2	479.782025	957.549496	-1.4095	-0.00067624	0.88818	0.00042613	-0.5213	-0.00025011	479.7826892392015	84.442	1.5122	82.896	82.43	83.943	-1.5462					96	29	5	0	0	0	0.36605	1	7273	7273		72.879	3.2516	1	364700			40652	8753	33540	33564	44001	44001					0.06902340586020728
NLVTITLLP	9	Unmodified	_NLVTITLLP_					0	0	0		ENST00000340080.8_1_7:7613055-7613121:+|nuORF	ENST00000340080.8_1_7:7613055-7613121:+|nuORF	ENST00000340080.8_1_7:7613055-7613121:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.7950439453125	2	492.310418	982.606283	0.57311	0.00028215	1.3341	0.0006568	1.9072	0.00093894	492.3110704020108	101.87	0.43237	101.87	101.78	102.21	0					11	9	2	0	0	0	0.027441	1	11336	11336		58.782	21.623	1	152910			40653	10556	33541	33565	44002	44002					0.11428388142530821
NLVWDREP	8	Unmodified	_NLVWDREP_					0	0	0			REV__nc|ENSG00000100201|Q92841-3|DDX17	REV__nc|ENSG00000100201|Q92841-3|DDX17	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.7410888671875	2	514.761623	1027.50869	2.2196	0.0011426	4.1532	0.0021379	6.3728	0.0032805	514.7634479027972	86.188	0.9743	86.188	85.705	86.679	0					51	23	3	0	0	0	0.028476	1	9144	9144		60.972	11.53	1	779010	+		40654	28766	33542	33566	44003	44003					-0.003960007336218041
NLWEILNRRAE	11	Unmodified	_NLWEILNRRAE_					0	0	0			REV__ENSG00000164237|ENST00000296658|CMBL	REV__ENSG00000164237|ENST00000296658|CMBL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.7735900878906	3	471.924759	1412.75245	-0.23933	-0.00011295	-0.24372	-0.00011502	-0.48305	-0.00022796	471.9244680583266	73.397	0.91788	70.001	69.64	70.557	-3.3961					47	18	4	0	0	0	0.02595	1	5692	5692		26.75	13.242	1	316960	+		40655	20962	33543	33567	44004	44004					0.06258038640453378
NLWISYET	8	Unmodified	_NLWISYET_					0	0	0		ENST00000317114.1_1_18:3594228-3596594:+|nuORF	ENST00000317114.1_1_18:3594228-3596594:+|nuORF	ENST00000317114.1_1_18:3594228-3596594:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	512.25341796875	2	513.250557	1024.48656	-0.32998	-0.00016936	-1.55	-0.00079554	-1.88	-0.00096491	513.2491917690006	86.239	1.5854	84.748	84.146	85.732	-1.4906					47	30	2	0	0	0	0.028476	1	7519	7519		15.642	0	1	17369			40656	10351	33544	33568	44005	44005					-0.024702252020460946
NLWREVTR	8	Unmodified	_NLWREVTR_					0	0	0		nc|ENSG00000144645|Q9BXB5-2|OSBPL10;ENSG00000144645|ENST00000396556|OSBPL10	nc|ENSG00000144645|Q9BXB5-2|OSBPL10	nc|ENSG00000144645|Q9BXB5-2|OSBPL10	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3428955078125	2	537.296165	1072.57778	-0.30671	-0.0001648	-1.1268	-0.00060541	-1.4335	-0.00077021	537.2954116161412	40.689	1.0305	40.689	40.432	41.462	0					56	22	5	0	0	0	0.028476	1	2549	2549		42.396	6.7778	1	1648700			40657	5167	33545	33569	44006	44006					0.044390832859335205
NLWRVVPPTTD	11	Unmodified	_NLWRVVPPTTD_					0	0	0			REV__CON__Q2UVX4	REV__CON__Q2UVX4	MULTI-MSMS	OvCa99_classI_Rep5	1	649.3558349609375	2	649.348594	1296.68264	1.8902	0.0012274	3.6174	0.0023489	5.5076	0.0035764	649.3508931970288	135.01	2.7966	135.01	134.65	137.45	0					102	59	2	0	0	0	0.56391	1	15807	15807		47.96	5.0953	1	8858500	+	+	40658	16205	33546	33570	44007	44007					0.0461615997185163
NLWVMQVS	8	Unmodified	_NLWVMQVS_					0	0	0			REV__nc|ENSG00000153246|Q13018-2|PLA2R1	REV__nc|ENSG00000153246|Q13018-2|PLA2R1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	488.7835388183594	2	488.74967	975.484787	0.010808	5.2822E-06	1.8799	0.00091881	1.8907	0.00092409	488.75079383078537	63.884	0.67421	60.409	60.061	60.735	-3.475					16	13	2	0	0	0	0.028476	1	4533	4533		29.15	0	1	39547	+		40659	20332	33547	33571	44008	44008					-0.003935574916340556
NLYGFTDKA	9	Unmodified	_NLYGFTDKA_					0	0	0			REV__ENST00000428623.5_1_2:145277196-145277833:+|nuORF	REV__ENST00000428623.5_1_2:145277196-145277833:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.3003540039062	2	514.756007	1027.49746	0.39963	0.00020571	-2.3023	-0.0011851	-1.9027	-0.0009794	514.7547474842432	81.15	0.42024	81.15	80.993	81.413	0					12	9	2	0	0	0	0.027462	1	8339	8339		42.396	17.877	1	234700	+		40660	25691	33548	33572	44009	44009					-0.015188228277793314
NLYIDFFI	8	Unmodified	_NLYIDFFI_					0	0	0		ENSG00000146477|ENST00000275300|SLC22A3	ENSG00000146477|ENST00000275300|SLC22A3	ENSG00000146477|ENST00000275300|SLC22A3	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.3275146484375	2	522.773668	1043.53278	1.5209	0.00079507	-3.1205	-0.0016313	-1.5997	-0.00083627	522.7717926673229	133.79	0.42772	133.79	133.58	134.01	0					11	8	2	0	0	0	0.028476	1	15560	15560		24.203	0	1	39683			40661	5296	33549	33573	44010	44010					0.012758397000425248
NLYKIMNEA	9	Unmodified	_NLYKIMNEA_					0	0	0			REV__tr|A0A7D6VY48|A0A7D6VY48_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11355PE=4SV=1	REV__tr|A0A7D6VY48|A0A7D6VY48_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11355PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.3246459960938	2	548.278792	1094.54303	1.7407	0.00095441	1.6084	0.00088183	3.3491	0.0018362	548.2790047787302	129.06	0.41901	129.06	128.79	129.21	0					11	8	2	0	0	0	0.027462	1	14940	14940		25.574	0	1	20928	+		40662	31808	33550	33574	44011	44011					-0.00045920637035123946
NLYPFVKTV	9	Unmodified	_NLYPFVKTV_					0	0	0		nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF;ENST00000427397.5_1_2:216176945-216197107:+|nuORF	nc|ENSG00000138363|P31939-2|ATIC	nc|ENSG00000138363|P31939-2|ATIC	MULTI-MSMS	OvCa99_classI_Rep5	1	540.806640625	2	540.808042	1079.60153	3.1359	0.0016959	4.4734	0.0024192	7.6093	0.0041152	541.3122726742263	102.5	0.72264	102.5	102.21	102.93	0					53	16	5	0	0	0	0.14855	2	11447	11417;11447		85.161	23.053	1	4317500			40663	4678	33551	33575	44012;44013	44013					0.06491503999745873
NLYPFVKTV	9	Unmodified	_NLYPFVKTV_					0	0	0		nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF;ENST00000427397.5_1_2:216176945-216197107:+|nuORF	nc|ENSG00000138363|P31939-2|ATIC	nc|ENSG00000138363|P31939-2|ATIC	MULTI-MSMS	OvCa9_classI_Rep2	2	540.8064575195312	2	540.808042	1079.60153	-1.5634	-0.00084551	1.1986	0.00064822	-0.36481	-0.00019729	540.8085799253307	102.84	1.6288	102.16	101.39	103.02	-0.68459					71	32	3	0	0	0	0.045281	2	9487	9481;9487		122.18	55.747	1	308440			40664	4678	33551	33575	44014;44015	44015					0.06491503999745873
NLYPFVKTV	9	Unmodified	_NLYPFVKTV_					0	0	0		nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF;ENST00000427397.5_1_2:216176945-216197107:+|nuORF	nc|ENSG00000138363|P31939-2|ATIC	nc|ENSG00000138363|P31939-2|ATIC	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.8077392578125	2	540.808042	1079.60153	-1.1142	-0.00060256	0.845	0.00045698	-0.26918	-0.00014558	540.808368396988	104.28	1.5051	102.17	101.64	103.15	-2.1192					67	28	3	0	0	0	0.094616	2	9438	9438;9448		98.629	24.374	1	336140			40665	4678	33551	33575	44016;44017	44016					0.06491503999745873
NLYPFVKTV	9	Unmodified	_NLYPFVKTV_					0	0	0		nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF;ENST00000427397.5_1_2:216176945-216197107:+|nuORF	nc|ENSG00000138363|P31939-2|ATIC	nc|ENSG00000138363|P31939-2|ATIC	MULTI-MATCH	OvCa9_classI_Rep3	3		2	540.808042	1079.60153	0.74791	0.00040448	-1.2115	-0.00065518	-0.46357	-0.0002507	540.8072578526449	103.67	1.518	102.24	101.66	103.18	-1.4347	-0.029343	-0.0016267	NaN	122.18	63	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	348840			40666	4678	33551	33575							0.06491503999745873
NLYRGKPV	8	Unmodified	_NLYRGKPV_					0	0	0		ENST00000357742.8_1_15:94857559-94858785:+|nuORF	ENST00000357742.8_1_15:94857559-94858785:+|nuORF	ENST00000357742.8_1_15:94857559-94858785:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.75982666015625	2	473.777077	945.5396	-0.58755	-0.00027837	3.8273	0.0018133	3.2397	0.0015349	473.778558920515	36.14	1.6369	36.14	35.661	37.298	0					64	35	2	0	0	0	0.028476	1	1907	1907		38.806	19.446	1	75133			40667	10722	33552	33576	44018	44018					0.06465197371278464
NLYRLLGL	8	Unmodified	_NLYRLLGL_					0	0	0		ENST00000529051.5_1_11:124824106-124824726:+|nuORF	ENST00000529051.5_1_11:124824106-124824726:+|nuORF	ENST00000529051.5_1_11:124824106-124824726:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	480.7967834472656	2	481.295102	960.575651	-0.28879	-0.00013899	-1.1597	-0.00055814	-1.4484	-0.00069713	481.2943111162632	115.72	0.54279	114.67	114.4	114.95	-1.0414					24	10	3	0	0	0	0.028476	1	8634	8634		25.45	0	1	67063			40668	13268	33553	33577	44019	44019					0.0937865454814073
NLYVTDAAEL	10	Unmodified	_NLYVTDAAEL_					0	0	0		ENSG00000148362|ENST00000371620|PAXX;nc|ENSG00000148362|Q9BUH6-2|PAXX	ENSG00000148362|ENST00000371620|PAXX	ENSG00000148362|ENST00000371620|PAXX	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.818359375	2	554.779679	1107.5448	1.806	0.001002	-1.5443	-0.00085676	0.26172	0.00014519	554.7765505680782	127.78	0.59474	127.78	127.45	128.04	0					15	12	2	0	0	0	0.02658	1	14796	14796		64.207	14.766	1	29469			40669	5406	33554	33578	44020	44020					-0.004665883474444854
NMALYRGSF	9	Unmodified	_NMALYRGSF_					0	0	0			REV__ENSG00000186895|ENST00000334134|FGF3	REV__ENSG00000186895|ENST00000334134|FGF3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.7723999023438	2	529.758027	1057.5015	-0.31371	-0.00016619	-3.0475	-0.0016144	-3.3612	-0.0017806	529.7563140454176	97.743	1.367	95.364	95.116	96.483	-2.3786					50	26	3	0	0	0	0.027462	1	8752	8752		30.504	0	1	68591	+		40670	22619	33555	33579	44021	44021					-0.024950566056986645
NMCSIHLLI	9	Unmodified	_NMCSIHLLI_					0	0	0		ENST00000493051.1_1_2:110886666-110902094:-|nuORF;nc|ENSG00000144061|O15259-3|NPHP1;ENSG00000144061|ENST00000445609|NPHP1;nc|ENSG00000144061|O15259|NPHP1;nc|ENSG00000144061|O15259-4|NPHP1	ENST00000493051.1_1_2:110886666-110902094:-|nuORF	ENST00000493051.1_1_2:110886666-110902094:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.7974243164062	2	522.272455	1042.53036	1.7961	0.00093807	1.1134	0.0005815	2.9095	0.0015196	522.7747218048225	82.527	0.4726	82.527	82.264	82.736	0					20	10	3	0	0	0	0.027462	1	8525	8525		31.53	6.0796	1	223700			40671	5127	33556	33580	44022	44022					0.010793446991101519
NMDDYMND	8	Unmodified	_NMDDYMND_					0	0	0		tr|A0A553SKS5|A0A553SKS5_NIACIDEAD/DEAHboxhelicaseOS=NialliacirculansOX=1397GN=CEQ21_19360PE=4SV=1	tr|A0A553SKS5|A0A553SKS5_NIACIDEAD/DEAHboxhelicaseOS=NialliacirculansOX=1397GN=CEQ21_19360PE=4SV=1	tr|A0A553SKS5|A0A553SKS5_NIACIDEAD/DEAHboxhelicaseOS=NialliacirculansOX=1397GN=CEQ21_19360PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.3024597167969	2	509.16805	1016.32155	-0.66173	-0.00033693	0.27383	0.00013943	-0.3879	-0.00019751	509.1687337002629	88.371	1.8934	86.24	85.803	87.697	-2.1309					97	37	5	0	0	0	0.028476	1	5436	5436		79.713	5.4575	1	416320			40672	33648	33557	33581	44023	44023					-0.18596148395670298
NMDPDPDKP	9	Unmodified	_NMDPDPDKP_					0	0	0		tr|A0A553SPS1|A0A553SPS1_NIACIBeta-xylosidaseOS=NialliacirculansOX=1397GN=CEQ21_26910PE=4SV=1	tr|A0A553SPS1|A0A553SPS1_NIACIBeta-xylosidaseOS=NialliacirculansOX=1397GN=CEQ21_26910PE=4SV=1	tr|A0A553SPS1|A0A553SPS1_NIACIBeta-xylosidaseOS=NialliacirculansOX=1397GN=CEQ21_26910PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.283203125	2	514.721307	1027.42806	-0.13899	-7.1543E-05	-1.3842	-0.00071248	-1.5232	-0.00078402	514.7194721595963	105.82	1.0985	105.39	105.05	106.15	-0.43642					28	21	2	0	0	0	0.027453	1	9910	9910		64.207	18.255	1	15709			40673	34076	33558	33582	44024	44024					-0.08455649838833779
NMFLLFIVL	9	Unmodified	_NMFLLFIVL_					0	0	0			REV__ENSG00000182050|ENST00000611864|MGAT4C	REV__ENSG00000182050|ENST00000611864|MGAT4C	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.3260498046875	2	555.325014	1108.63547	0.66952	0.0003718	-1.2627	-0.00070121	-0.59319	-0.00032941	555.3242686655811	83.812	1.7126	81.149	80.632	82.344	-2.6629					84	35	7	0	0	0	0.6959	1	6992	6992		19.36	0	1	648290	+		40674	22258	33559	33583	44025	44025					0.08550209167151479
NMHIRDFLQ	9	Unmodified	_NMHIRDFLQ_					0	0	0		ENSG00000122728|ENST00000242310|TAF1L;TAF1L|p.I1514Qfs*6|1|0.03|ENSG00000122728|chr9:32631039-32631040|AT/-|frameshift_variant;TAF1L|p.D1494Ifs*14|1|0.17|ENSG00000122728|chr9:32631100-32631100|C/-|frameshift_variant	ENSG00000122728|ENST00000242310|TAF1L	ENSG00000122728|ENST00000242310|TAF1L	MULTI-MSMS	OvCa9_classI_Rep2	2	587.2948608398438	2	587.295307	1172.57606	-1.7713	-0.0010403	1.3003	0.00076366	-0.47097	-0.0002766	587.2959419520926	118.58	1.9781	118.43	118.08	120.06	-0.14754					123	39	5	0	0	0	0.61208	1	11455	11455		30.504	1.3336	1	499840			40675	3551	33560	33584	44026	44026					-0.0033229379432668793
NMIELNLLL	9	Unmodified	_NMIELNLLL_					0	0	0			REV__ENST00000392185.7_2_6:158244383-158288624:+|nuORF	REV__ENST00000392185.7_2_6:158244383-158288624:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	536.810791015625	2	536.807185	1071.59982	0.13932	7.4785E-05	3.5696	0.0019162	3.7089	0.001991	536.8090111804963	58.244	0.70755	58.244	58.027	58.734	0					25	16	2	0	0	0	0.16264	1	4930	4930		82.75	0	1	3732000	+		40676	25249	33561	33585	44027	44027					0.06688126919493698
NMIETLWPK	9	Unmodified	_NMIETLWPK_					0	0	0			REV__CPVL|p.V418Ffs*24|1|0.38|ENSG00000106066|chr7:29030646-29030646|T/-|frameshift_variant	REV__CPVL|p.V418Ffs*24|1|0.38|ENSG00000106066|chr7:29030646-29030646|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	566.3004150390625	2	566.296985	1130.57942	2.0218	0.0011449	0.45274	0.00025638	2.4745	0.0014013	566.2973096531085	134.72	3.632	134.72	133.77	137.4	0					253	77	6	0	0	0	0.51865	1	16005	16005		40.778	1.5253	1	76455000	+		40677	16237	33562	33586	44028	44028					0.019349562596744363
NMILLLLF	8	Unmodified	_NMILLLLF_					0	0	0			REV__ENST00000309934.4_2_3:122928080-122928224:+|nuORF	REV__ENST00000309934.4_2_3:122928080-122928224:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.7960205078125	2	488.798632	975.582711	-0.018766	-9.1728E-06	3.9636	0.0019374	3.9448	0.0019282	488.8004610679699	64.691	0.57356	64.691	64.461	65.034	0					24	13	2	0	0	0	0.028476	1	5933	5933		29.842	8.1392	1	2320600	+		40678	24329	33563	33587	44029	44029					0.09394251104356499
NMITQTPFVI	10	Oxidation (M)	_NM(Oxidation (M))ITQTPFVI_		NM(1)ITQTPFVI		NM(64)ITQTPFVI	0	0	1		tr|A0A553SQ19|A0A553SQ19_NIACIRiboflavinbiosynthesisproteinRibDOS=NialliacirculansOX=1397GN=ribDPE=3SV=1	tr|A0A553SQ19|A0A553SQ19_NIACIRiboflavinbiosynthesisproteinRibDOS=NialliacirculansOX=1397GN=ribDPE=3SV=1	tr|A0A553SQ19|A0A553SQ19_NIACIRiboflavinbiosynthesisproteinRibDOS=NialliacirculansOX=1397GN=ribDPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	590.3069458007812	2	590.307549	1178.60055	1.2754	0.00075287	-3.2485	-0.0019176	-1.9731	-0.0011647	590.3058400339979	144.15	0.97807	144.15	143.81	144.79	0					38	19	3	0	0	0	0.42962	1	16874	16874		64.207	9.431	1	257960			40679	34107	33564	33588	44030	44030		750			0.018389215685601812
NMKIIFCP	8	Unmodified	_NMKIIFCP_					0	0	0			REV__ENSG00000186009|ENST00000335288|ATP4B	REV__ENSG00000186009|ENST00000335288|ATP4B	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.26483154296875	2	483.250991	964.48743	-0.44119	-0.00021321	1.4115	0.00068213	0.97034	0.00046892	483.25106244977474	54.957	1.1011	54.957	54.214	55.315	0					32	25	2	0	0	0	0.028476	1	4364	4364		42.474	11.971	1	317080	+		40680	22552	33565	33589	44031	44031					0.0037657464165476995
NMKLVPVVN	9	Unmodified	_NMKLVPVVN_					0	0	0		DAG1|p.V295Gfs*88|1|0.11|ENSG00000173402|chr3:49531395-49531395|T/-|frameshift_variant;ENSG00000173402|ENST00000308775|DAG1	DAG1|p.V295Gfs*88|1|0.11|ENSG00000173402|chr3:49531395-49531395|T/-|frameshift_variant	DAG1|p.V295Gfs*88|1|0.11|ENSG00000173402|chr3:49531395-49531395|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.31329345703125	2	507.294245	1012.57394	-0.51939	-0.00026348	-1.625	-0.00082434	-2.1444	-0.0010878	507.2931998430201	106.07	1.2476	105.63	104.75	106	-0.43642					31	24	2	0	0	0	0.027461	1	9810	9810		32.812	3.6629	1	12052			40681	709	33566	33590	44032	44032					0.06815277467865144
NMKRLLTTGV	10	Unmodified	_NMKRLLTTGV_					0	0	0		nc|ENSG00000103647|Q9UQ03-2|CORO2B;ENSG00000103647|ENST00000261861|CORO2B	nc|ENSG00000103647|Q9UQ03-2|CORO2B	nc|ENSG00000103647|Q9UQ03-2|CORO2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.3152465820312	2	566.828983	1131.64341	0.073604	4.1721E-05	-0.40192	-0.00022782	-0.32832	-0.0001861	567.3298633287424	71.151	1.2469	71.151	70.839	72.086	0					46	30	2	0	0	0	0.02676	1	6906	6906		41.427	3.6151	1	1600000			40682	2335	33567	33591	44033	44033					0.08285736416610234
NMKRRFSD	8	Unmodified	_NMKRRFSD_					0	0	0		tr|A0A7D6VUT6|A0A7D6VUT6_9CLOTTranscription-repair-couplingfactorOS=ClostridiumintestinaleOX=36845GN=mfdPE=3SV=1	tr|A0A7D6VUT6|A0A7D6VUT6_9CLOTTranscription-repair-couplingfactorOS=ClostridiumintestinaleOX=36845GN=mfdPE=3SV=1	tr|A0A7D6VUT6|A0A7D6VUT6_9CLOTTranscription-repair-couplingfactorOS=ClostridiumintestinaleOX=36845GN=mfdPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.2858276367188	2	527.26655	1052.51855	-0.079374	-4.1851E-05	-0.023688	-1.249E-05	-0.10306	-5.4341E-05	527.2665225547639	113.99	1.3695	112.54	112.15	113.52	-1.4461					36	26	2	0	0	0	0.028476	1	10667	10667		45.952	5.1738	1	32758			40683	35199	33568	33592	44034	44034					-0.005611359998738408
NMLELLRV	8	Unmodified	_NMLELLRV_					0	0	0			REV__nc|ENSG00000157540|Q13627-4|DYRK1A	REV__nc|ENSG00000157540|Q13627-4|DYRK1A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.2491455078125	2	494.28642	986.558287	0.89069	0.00044025	-0.042764	-2.1138E-05	0.84792	0.00041912	494.28679778449333	96.772	1.6618	94.347	93.457	95.119	-2.4256					52	32	3	0	0	0	0.028476	1	8603	8603		49.442	0	1	190420	+		40684	28947	33569	33593	44035	44035					0.0644699095081478
NMLIAFSQNFL	11	Unmodified	_NMLIAFSQNFL_					0	0	0		nc|ENSG00000241635|P22309-2|UGT1A1;ENSG00000241635|ENST00000305208|UGT1A1	nc|ENSG00000241635|P22309-2|UGT1A1	nc|ENSG00000241635|P22309-2|UGT1A1	MULTI-SECPEP	OvCa9_classI_Rep3	3	433.17138671875	3	433.225158	1296.65364	1.9866	0.00086066	0.48919	0.00021193	2.4758	0.0010726	433.22508303723083	62.937	0.20366	59.903	59.756	59.959	-3.0339					5	3	2	0	0	0	0.026079	1	2321	2321		25.126	2.5463	1	6243.5			40685	9353	33570	33594	44036	44036					0.017182993512051326
NMLKNRLQS	9	Unmodified	_NMLKNRLQS_					0	0	0		ENSG00000168386|ENST00000477258|FILIP1L;nc|ENSG00000168386|Q4L180-6|FILIP1L;nc|ENSG00000168386|Q4L180-5|FILIP1L;nc|ENSG00000168386|Q4L180-3|FILIP1L;nc|ENSG00000168386|Q4L180-7|FILIP1L;nc|ENSG00000168386|Q4L180-2|FILIP1L;nc|ENSG00000168386|Q4L180|FILIP1L	ENSG00000168386|ENST00000477258|FILIP1L	ENSG00000168386|ENST00000477258|FILIP1L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.836669921875	2	552.303133	1102.59171	-1.5821	-0.00087382	1.9415	0.0010723	0.35938	0.00019849	552.3032483431272	108.52	0.85946	106.79	106.52	107.38	-1.7256					25	16	2	0	0	0	0.027411	1	9983	9983		74.255	20.904	1	16561			40686	6898	33571	33595	44037	44037					0.044519927227156586
NMLLQSICL	9	Carbamidomethyl (C)	_NMLLQSIC(Carbamidomethyl (C))L_	NMLLQSIC(1)L		NMLLQSIC(100)L		0	1	0		ENST00000443565.1_1_1:81106969-81107053:+|nuORF	ENST00000443565.1_1_1:81106969-81107053:+|nuORF	ENST00000443565.1_1_1:81106969-81107053:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.3096923828125	2	546.28302	1090.55149	-0.21094	-0.00011523	3.5303	0.0019285	3.3194	0.0018133	546.7854946231738	51.244	0.29784	51.244	50.993	51.291	0					11	6	3	0	0	0	0.027137	1	3913	3913		101.6	22.15	1	112650			40687	11952	33572	33596	44038	44038	132				0.009833100079276846
NMLPQIFRV	9	Unmodified	_NMLPQIFRV_					0	0	0		ENSG00000047621|ENST00000261250|C12orf4;ENST00000544258.1_3_12:4598975-4611546:-|nuORF	ENSG00000047621|ENST00000261250|C12orf4	ENSG00000047621|ENST00000261250|C12orf4	MULTI-MSMS	OvCa99_classI_Rep5	1	559.3131713867188	2	559.312969	1116.61138	2.0941	0.0011712	-0.26747	-0.0001496	1.8266	0.0010216	559.3126798442357	125.14	0.5292	125.14	124.84	125.37	0					26	12	3	0	0	0	0.13482	2	14437	14437;14461		87.754	31.033	1	829890			40688	1148	33573	33597	44039;44040	44039					0.05774368733477786
NMLVIAKEP	9	Unmodified	_NMLVIAKEP_					0	0	0			REV__tr|A0A7D6ZNI0|A0A7D6ZNI0_9CLOTDNApolymeraseIIIsubunitdeltaOS=ClostridiumintestinaleOX=36845GN=holAPE=4SV=1	REV__tr|A0A7D6ZNI0|A0A7D6ZNI0_9CLOTDNApolymeraseIIIsubunitdeltaOS=ClostridiumintestinaleOX=36845GN=holAPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.78741455078125	2	507.786253	1013.55795	-0.71966	-0.00036543	3.9476	0.0020045	3.2279	0.0016391	507.78818211844305	46.857	1.6349	44.147	43.646	45.281	-2.7097					89	32	4	0	0	0	0.6653	1	2851	2851		24.203	1.1603	1	755080	+		40689	32119	33574	33598	44041	44041					0.05171571230948757
NMLWFESL	8	Unmodified	_NMLWFESL_					0	0	0		ENSG00000159086|ENST00000331923|PAXBP1;nc|ENSG00000159086|Q9Y5B6-2|PAXBP1;ENST00000497873.1_1_21:34107263-34123563:-|nuORF	ENSG00000159086|ENST00000331923|PAXBP1	ENSG00000159086|ENST00000331923|PAXBP1	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.7924194335938	2	520.249503	1038.48445	-0.83301	-0.00043337	-3.3987	-0.0017682	-4.2317	-0.0022015	520.2475869135701	86.757	1.1157	84.58	84.28	85.396	-2.1768					36	21	2	0	0	0	0.028476	1	5183	5183		73.975	13.003	1	51447			40690	5986	33575	33599	44042	44042					-0.03324977211514124
NMNDRREF	8	Unmodified	_NMNDRREF_					0	0	0			REV__ENSG00000089199|ENST00000378961|CHGB	REV__ENSG00000089199|ENST00000378961|CHGB	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.3046875	2	541.245815	1080.47708	0.31886	0.00017258	-1.9751	-0.001069	-1.6563	-0.00089645	541.2448072433218	103.42	0.41746	103.42	103.18	103.6	0					16	9	2	0	0	0	0.028476	1	11554	11554		24.203	1.1603	1	166610	+		40691	17203	33576	33600	44043	44043					-0.0599431675921096
NMNEQQLR	8	Unmodified	_NMNEQQLR_					0	0	0			REV__nc|ENSG00000115355|Q3V6T2-5|CCDC88A	REV__nc|ENSG00000115355|Q3V6T2-5|CCDC88A	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7800903320312	2	516.74819	1031.48183	-0.87852	-0.00045397	-3.9864	-0.00206	-4.8649	-0.002514	516.7459245963751	41.644	0.47616	41.644	41.505	41.982	0					16	10	3	0	0	0	0.028476	1	2663	2663		30.504	2.6214	1	101700	+		40692	18238	33577	33601	44044	44044					-0.032654326164674785
NMNKAIEKLVD	11	Unmodified	_NMNKAIEKLVD_					0	0	0		tr|A0A7D6VS87|A0A7D6VS87_9CLOTPhosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_15085PE=3SV=1	tr|A0A7D6VS87|A0A7D6VS87_9CLOTPhosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_15085PE=3SV=1	tr|A0A7D6VS87|A0A7D6VS87_9CLOTPhosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_15085PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	637.7877197265625	2	637.842287	1273.67002	1.3665	0.0008716	-2.2073	-0.0014079	-0.84085	-0.00053633	637.8407640189631	155.79	1.4186	155.79	155.48	156.9	0					44	27	2	0	0	0	0.025759	1	18303	18303		16.007	0	1	81241			40693	34997	33578	33602	44045	44045					0.04413380517303267
NMNLNKIRV	9	Unmodified	_NMNLNKIRV_					0	0	0			REV__ENSG00000116580|ENST00000368331|GON4L;REV__YY1AP1-ARHGEF2|2|fusion	REV__ENSG00000116580|ENST00000368331|GON4L	MULTI-MSMS	OvCa99_classI_Rep5	1	551.3114013671875	2	551.3135	1100.61245	1.2066	0.00066524	-3.2887	-0.0018131	-2.0821	-0.0011479	551.3113274314663	147.01	0.73776	147.01	146.67	147.41	0					32	14	5	0	0	0	0.63422	1	17188	17188		27.882	3.3631	1	174340	+		40694	15655;32762	33579	33603	44046	44046					0.06616583102413642
NMPAMNGM	8	Unmodified	_NMPAMNGM_					0	0	0		tr|A0A553SN82|A0A553SN82_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23965PE=4SV=1	tr|A0A553SN82|A0A553SN82_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23965PE=4SV=1	tr|A0A553SN82|A0A553SN82_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23965PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1716613769531	2	433.171884	864.329215	2.6506	0.0011482	-3.8381	-0.0016626	-1.1875	-0.00051439	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.74679	1	1893	1893		28.254	1.5614	1	60065			40695	33909	33580	33604	44047	44047					-0.10837667609075652
NMPKRVTDD	9	Unmodified	_NMPKRVTDD_					0	0	0		DNAH11|p.I2105R|1|0.06|ENSG00000105877|chr7:21704474-21704474|T/G|missense_variant	DNAH11|p.I2105R|1|0.06|ENSG00000105877|chr7:21704474-21704474|T/G|missense_variant	DNAH11|p.I2105R|1|0.06|ENSG00000105877|chr7:21704474-21704474|T/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3164672851562	2	538.263673	1074.51279	2.1358	0.0011496	-1.1819	-0.00063615	0.95397	0.00051349	538.261315851659	137.01	0.52834	137.01	136.73	137.26	0					15	10	2	0	0	0	0.027462	1	15943	15943		29.15	0.89528	1	32412			40696	747	33581	33605	44048	44048					-0.021482793022187252
NMRLSKRNS	9	Unmodified	_NMRLSKRNS_					0	0	0			REV__ZDBF2|p.G2318Rfs*12|1|0.09|ENSG00000204186|chr2:206311479-206311480|-/AGAGCTGTGGATATAAT|frameshift_variant	REV__ZDBF2|p.G2318Rfs*12|1|0.09|ENSG00000204186|chr2:206311479-206311480|-/AGAGCTGTGGATATAAT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	553.2991333007812	2	553.298381	1104.58221	0.50069	0.00027703	1.8025	0.00099733	2.3032	0.0012744	553.29912890614	161.08	2.1208	161.08	160.31	162.43	0					68	41	3	0	0	0	0.42676	1	18873	18873		49.442	10.635	1	194190	+		40697	23131	33582	33606	44049	44049					0.034102244371979396
NMSITIKLL	9	Unmodified	_NMSITIKLL_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.8087158203125	2	516.809728	1031.6049	1.3713	0.0007087	-2.4283	-0.001255	-1.057	-0.00054626	516.8082886288538	135.27	0.98337	135.27	135.04	136.02	0					41	20	3	0	0	0	0.10502	1	15758	15758		95.815	10.654	1	192380	+		40698	28906	33583	33607	44050	44050					0.09036430782111893
NMVAKVDEV	9	Unmodified	_NMVAKVDEV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	OvCa99_classI_Rep5	1	502.7589111328125	2	502.757692	1003.50083	0.4415	0.00022197	-0.054958	-2.7631E-05	0.38655	0.00019434	502.75752100973324	67.205	0.6655	67.205	66.977	67.642	0					45	16	4	0	0	0	0.075543	1	6271	6271		104.06	2.4561	1	3759600			40699	8867	33584	33608	44051	44051					-0.0007789604541130757
NMVAKVDEV	9	Unmodified	_NMVAKVDEV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	502.757692	1003.50083	-0.88007	-0.00044246	0.25531	0.00012836	-0.62475	-0.0003141	502.7575299260289	69.659	0.89936	67.086	66.812	67.712	-2.573	-0.045641	4.2493E-05	NaN	104.06	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58828			40700	8867	33584	33608							-0.0007789604541130757
NMVAKVDEV	9	Unmodified	_NMVAKVDEV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	502.757692	1003.50083	-1.2059	-0.00060629	1.419	0.0007134	0.21303	0.0001071	502.75809951048524	70.585	0.91496	67.103	66.836	67.751	-3.4812	-0.028117	0.0012126	NaN	104.06	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	254660			40701	8867	33584	33608							-0.0007789604541130757
NMVKPLGLL	9	Unmodified	_NMVKPLGLL_					0	0	0		nc|ENSG00000164520|Q8TD07-4|RAET1E;nc|ENSG00000164520|Q8TD07-3|RAET1E;nc|ENSG00000164520|Q8TD07-5|RAET1E;nc|ENSG00000164520|Q8TD07-2|RAET1E;ENSG00000164520|ENST00000357183|RAET1E;nc|ENSG00000164520|Q8TD07-6|RAET1E	nc|ENSG00000164520|Q8TD07-4|RAET1E	nc|ENSG00000164520|Q8TD07-4|RAET1E	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.6969909667969	2	492.799163	983.583773	0.28323	0.00013958	3.5825	0.0017654	3.8657	0.001905	492.80071779048905	45.444	0.68779	45.444	45.202	45.89	0					22	15	2	0	0	0	0.027462	1	3131	3131		33.516	21.309	1	1030900			40702	6463	33585	33609	44052	44052					0.09132465473248885
NMVNVILVD	9	Unmodified	_NMVNVILVD_					0	0	0		tr|A0A553SRS3|A0A553SRS3_NIACINa+/H+antiportersubunitAOS=NialliacirculansOX=1397GN=CEQ21_01800PE=3SV=1	tr|A0A553SRS3|A0A553SRS3_NIACINa+/H+antiportersubunitAOS=NialliacirculansOX=1397GN=CEQ21_01800PE=3SV=1	tr|A0A553SRS3|A0A553SRS3_NIACINa+/H+antiportersubunitAOS=NialliacirculansOX=1397GN=CEQ21_01800PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.2837219238281	2	508.775885	1015.53722	-1.2638	-0.000643	1.4048	0.00071473	0.14099	7.1734E-05	508.77662116292663	83.055	1.1397	80.759	80.48	81.62	-2.2963					52	23	3	0	0	0	0.027185	1	4689	4689		82.241	0	1	509850			40703	34289	33586	33610	44053	44053					0.030069808513189855
NMVNVILVD	9	Unmodified	_NMVNVILVD_					0	0	0		tr|A0A553SRS3|A0A553SRS3_NIACINa+/H+antiportersubunitAOS=NialliacirculansOX=1397GN=CEQ21_01800PE=3SV=1	tr|A0A553SRS3|A0A553SRS3_NIACINa+/H+antiportersubunitAOS=NialliacirculansOX=1397GN=CEQ21_01800PE=3SV=1	tr|A0A553SRS3|A0A553SRS3_NIACINa+/H+antiportersubunitAOS=NialliacirculansOX=1397GN=CEQ21_01800PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.2857360839844	2	508.775885	1015.53722	-0.13736	-6.9884E-05	0.08059	4.1002E-05	-0.056767	-2.8881E-05	508.77580932250646	83.619	1.3316	80.956	80.583	81.914	-2.6629					63	27	4	0	0	0	0.027453	1	6921	6921		54.776	10.66	1	464040			40704	34289	33586	33610	44054	44054					0.030069808513189855
NMVVQTTALLF	11	Unmodified	_NMVVQTTALLF_					0	0	0		ENSG00000171596|ENST00000305141|NMUR1	ENSG00000171596|ENST00000305141|NMUR1	ENSG00000171596|ENST00000305141|NMUR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	618.3109130859375	2	618.836474	1235.65839	1.7702	0.0010955	-1.8345	-0.0011352	-0.064238	-3.9753E-05	619.3352906642236	118.25	0.60786	118.25	117.97	118.58	0					16	12	2	0	0	0	0.025729	1	13582	13582		59.931	13.959	1	121800			40705	7216	33587	33611	44055	44055					0.04999183493964665
NMYGKVVTV	9	Unmodified	_NMYGKVVTV_					0	0	0		nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF	nc|ENSG00000196235|O00267-2|SUPT5H	nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-MSMS	OvCa99_classI_Rep5	1	505.7717590332031	2	505.770603	1009.52665	2.5669	0.0012983	-0.19043	-9.6316E-05	2.3765	0.001202	505.7704278091996	75.533	0.74456	75.533	75.251	75.996	0					40	17	3	0	0	0	0.064985	1	7525	7525		110.12	48.012	1	3160700			40706	8581	33588	33612	44056	44056					0.022269981968747743
NNAIILALL	9	Unmodified	_NNAIILALL_					0	0	0		tr|A0A7D6VSJ5|A0A7D6VSJ5_9CLOTGalactose/methylgalactosideABCtransporterpermeaseMglCOS=ClostridiumintestinaleOX=36845GN=mglCPE=4SV=1	tr|A0A7D6VSJ5|A0A7D6VSJ5_9CLOTGalactose/methylgalactosideABCtransporterpermeaseMglCOS=ClostridiumintestinaleOX=36845GN=mglCPE=4SV=1	tr|A0A7D6VSJ5|A0A7D6VSJ5_9CLOTGalactose/methylgalactosideABCtransporterpermeaseMglCOS=ClostridiumintestinaleOX=36845GN=mglCPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	478.2849426269531	2	477.80276	953.590967	0.084	4.0135E-05	-1.5788	-0.00075433	-1.4948	-0.0007142	477.80188593398935	89.865	1.2247	87.784	87.239	88.464	-2.0805					36	23	2	0	0	0	0.027433	1	5537	5537		47.916	12.297	1	59669			40707	35031	33589	33613	44057	44057					0.11231521345325746
NNANIVKTI	9	Unmodified	_NNANIVKTI_					0	0	0		tr|A0A7D6ZXF7|A0A7D6ZXF7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13115PE=4SV=1	tr|A0A7D6ZXF7|A0A7D6ZXF7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13115PE=4SV=1	tr|A0A7D6ZXF7|A0A7D6ZXF7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13115PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	493.7869873046875	2	493.785099	985.555644	-0.2692	-0.00013293	3.7452	0.0018493	3.476	0.0017164	493.7867393201552	121.47	1.3357	121.27	120.95	122.29	-0.19718					61	26	3	0	0	0	0.35444	1	11735	11735		56.721	3.3696	1	176810			40708	35879	33590	33614	44058	44058					0.06228858817530636
NNAVREFSIVS	11	Unmodified	_NNAVREFSIVS_					0	0	0		ENST00000222573.4_1_7:20449902-20450115:+|nuORF	ENST00000222573.4_1_7:20449902-20450115:+|nuORF	ENST00000222573.4_1_7:20449902-20450115:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	618.3218383789062	2	618.322576	1234.6306	-1.0712	-0.00066232	-1.688	-0.0010438	-2.7592	-0.0017061	618.3212200119873	124.54	1.2461	123.15	122.87	124.11	-1.3908					64	23	5	0	0	0	0.69808	1	11836	11836		30.318	5.7985	1	149640			40709	9698	33591	33615	44059	44059					0.02266996558091705
NNCKQQIKK	9	Unmodified	_NNCKQQIKK_					0	0	0			REV__ENST00000304778.11_1_X:118140125-118143141:+|nuORF	REV__ENST00000304778.11_1_X:118140125-118143141:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.7890014648438	2	552.303133	1102.59171	0.41685	0.00023023	-4.2255	-0.0023337	-3.8086	-0.0021035	552.3023631586839	72.218	0.61922	72.218	71.792	72.412	0					23	14	3	0	0	0	0.027462	1	6996	6996		27.882	11.409	1	659190	+		40710	24279	33592	33616	44060	44060					0.044519927227156586
NNCKQQIKK	9	Unmodified	_NNCKQQIKK_					0	0	0			REV__ENST00000304778.11_1_X:118140125-118143141:+|nuORF	REV__ENST00000304778.11_1_X:118140125-118143141:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	552.303133	1102.59171	-0.85066	-0.00046982	-8.6771	-0.0047924	-9.5277	-0.0052622	552.7998288080431	74.524	2.2767	72.113	71.101	73.378	-2.4106	-0.02453	0.00012663	NaN	34.173	118	45	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105310	+		40711	24279	33592	33616							0.044519927227156586
NNCLLLEQL	9	Unmodified	_NNCLLLEQL_					0	0	0			REV__ENSG00000100949|ENST00000216840|RABGGTA;REV__ENST00000560243.5_1_14:24734823-24736046:-|nuORF	REV__ENSG00000100949|ENST00000216840|RABGGTA	MULTI-MSMS	OvCa99_classI_Rep5	1	530.2794189453125	2	530.278792	1058.54303	1.9141	0.001015	0.55495	0.00029428	2.469	0.0013093	530.2789506681235	120.21	0.44402	120.21	119.96	120.4	0					15	10	2	0	0	0	0.49652	1	13814	13814		42.864	0.46813	1	456790	+		40712	17462;27613	33593	33617	44061	44061					0.016100793629675536
NNCLLLEQL	9	Unmodified	_NNCLLLEQL_					0	0	0			REV__ENSG00000100949|ENST00000216840|RABGGTA;REV__ENST00000560243.5_1_14:24734823-24736046:-|nuORF	REV__ENSG00000100949|ENST00000216840|RABGGTA	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	530.278792	1058.54303	1.9141	0.001015	0.55495	0.00029428	2.469	0.0013093	530.2789506681235	120.21	0.44402	120.21	119.96	120.4	0	0	0	NaN	42.864	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	456790	+		40713	17462;27613	33593	33617							0.016100793629675536
NNCMIQLFT	9	Unmodified	_NNCMIQLFT_					0	0	0		ENSG00000181927|ENST00000641760|OR4P4	ENSG00000181927|ENST00000641760|OR4P4	ENSG00000181927|ENST00000641760|OR4P4	MULTI-SECPEP	OvCa9_classI_Rep2	2	542.2905883789062	2	542.25172	1082.48889	-1.146	-0.00062143	3.7945	0.0020576	2.6485	0.0014362	542.25341339255	75.618	0.8259	73.764	73.323	74.149	-1.854					20	15	2	0	0	0	0.027411	1	6180	6180		74.255	12.148	1	21205			40714	7961	33594	33618	44062	44062					-0.049058360602430184
NNCMIQLFT	9	Unmodified	_NNCMIQLFT_					0	0	0		ENSG00000181927|ENST00000641760|OR4P4	ENSG00000181927|ENST00000641760|OR4P4	ENSG00000181927|ENST00000641760|OR4P4	MULTI-MATCH	OvCa99_classI_Rep5	1		2	542.25172	1082.48889	-0.1205	-6.534E-05	3.9711	0.0021534	3.8506	0.002088	542.2536385498399	73.485	0.47932	73.485	73.276	73.755	0	-0.092001	0.00040837	NaN	74.255	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1106800			40715	7961	33594	33618							-0.049058360602430184
NNCMIQLFT	9	Unmodified	_NNCMIQLFT_					0	0	0		ENSG00000181927|ENST00000641760|OR4P4	ENSG00000181927|ENST00000641760|OR4P4	ENSG00000181927|ENST00000641760|OR4P4	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	542.25172	1082.48889	-0.84536	-0.0004584	3.0399	0.0016484	2.1945	0.00119	542.2531622749144	76.421	0.60912	73.482	73.222	73.832	-2.9389	-0.094875	-0.0006016	NaN	74.255	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82824			40716	7961	33594	33618							-0.049058360602430184
NNDTERNQP	9	Unmodified	_NNDTERNQP_					0	0	0			REV__tr|A0A7D7A031|A0A7D7A031_9CLOTCarboxypeptidaseregulatory-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08440PE=4SV=1	REV__tr|A0A7D7A031|A0A7D7A031_9CLOTCarboxypeptidaseregulatory-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08440PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	543.8099975585938	2	544.241783	1086.46901	0.28479	0.000155	1.4174	0.00077139	1.7022	0.00092639	544.243188387953	112.91	1.5797	112.79	112.23	113.81	-0.12174					47	31	2	0	0	0	0.027411	1	10763	10763		64.207	0.901	1	17299	+		40717	32434	33595	33619	44063	44063					-0.07076172474990017
NNDTKWYV	8	Unmodified	_NNDTKWYV_					0	0	0			REV__nc|ENSG00000138778|Q02224-3|CENPE	REV__nc|ENSG00000138778|Q02224-3|CENPE	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.7922973632812	2	520.245806	1038.47706	-0.29133	-0.00015156	3.5076	0.0018248	3.2163	0.0016733	520.247190797097	86.106	0.96911	84.616	84.146	85.115	-1.4906					31	18	2	0	0	0	0.028476	1	7494	7494		55.504	4.1688	1	28106	+		40718	19572	33596	33620	44064	44064					-0.040639934875798644
NNEKEAPWQ	9	Unmodified	_NNEKEAPWQ_					0	0	0			REV__nc|ENSG00000168032|O75355-2|ENTPD3	REV__nc|ENSG00000168032|O75355-2|ENTPD3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.7412109375	2	558.259445	1114.50434	-0.18272	-0.000102	-0.19553	-0.00010916	-0.37825	-0.00021116	558.2591799583862	54.558	0.35899	51.31	51.183	51.542	-3.2474					9	6	2	0	0	0	0.027462	1	3416	3416		39.253	5.0803	1	22466	+		40719	21338	33597	33621	44065	44065					-0.04833509947206949
NNEKLGLATR	10	Unmodified	_NNEKLGLATR_					0	0	0			REV__ENSG00000152463|ENST00000378228|OLAH	REV__ENSG00000152463|ENST00000378228|OLAH	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.7412109375	2	558.312012	1114.60947	-0.17661	-9.8603E-05	0.37388	0.00020874	0.19727	0.00011014	558.312334153696	54.54	0.81967	51.292	50.979	51.798	-3.2474					27	15	2	0	0	0	0.026646	1	3416	3416		53.089	21.559	1	160390	+		40720	20288	33598	33622	44066	44066					0.05675031249211315
NNEKLGLATR	10	Unmodified	_NNEKLGLATR_					0	0	0			REV__ENSG00000152463|ENST00000378228|OLAH	REV__ENSG00000152463|ENST00000378228|OLAH	MULTI-MATCH	OvCa9_classI_Rep2	2		2	558.312012	1114.60947	-0.56948	-0.00031795	0.44948	0.00025095	-0.12	-6.6999E-05	558.3122245191964	54.213	0.89691	51.399	50.975	51.872	-2.8139	0.053394	2.5738E-05	NaN	24.232	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59231	+		40721	20288	33598	33622							0.05675031249211315
NNEKLGNLIT	10	Unmodified	_NNEKLGNLIT_					0	0	0		tr|A0A7D6VSA1|A0A7D6VSA1_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04985PE=4SV=1	tr|A0A7D6VSA1|A0A7D6VSA1_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04985PE=4SV=1	tr|A0A7D6VSA1|A0A7D6VSA1_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04985PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.7412109375	2	558.306395	1114.59824	-0.20096	-0.0001122	-2.1744	-0.001214	-2.3754	-0.0013262	558.3054542298287	55.18	0.8209	51.927	51.332	52.152	-3.2521					41	15	3	0	0	0	0.026646	1	3416	3416		53.089	15.93	1	81382			40722	35002	33599	33623	44067	44067					0.04552209155099263
NNEKNFLCASE	11	Unmodified	_NNEKNFLCASE_					0	0	0		ENSG00000196074|ENST00000357552|SYCP2	ENSG00000196074|ENST00000357552|SYCP2	ENSG00000196074|ENST00000357552|SYCP2	MULTI-MSMS	OvCa99_classI_Rep5	1	634.7840576171875	2	634.782427	1267.5503	-1.0156	-0.00064471	3.8266	0.002429	2.8109	0.0017843	634.7846628755735	43.887	0.34372	43.887	43.694	44.038	0					20	7	4	0	0	0	0.68588	1	2942	2942		25.126	11.672	1	580700			40723	8559	33600	33624	44068	44068					-0.0727723282725492
NNELKPLQVKG	11	Unmodified	_NNELKPLQVKG_					0	0	0		tr|A0A553SS87|A0A553SS87_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_02630PE=4SV=1	tr|A0A553SS87|A0A553SS87_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_02630PE=4SV=1	tr|A0A553SS87|A0A553SS87_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_02630PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	620.3587646484375	2	620.356419	1238.69829	-0.097204	-6.0301E-05	-0.0071655	-4.4452E-06	-0.10437	-6.4746E-05	620.3563887853736	57.473	0.84811	57.473	57.221	58.069	0					52	19	4	0	0	0	0.56391	1	4849	4849		47.96	5.0953	1	4653700			40724	34344	33601	33625	44069	44069					0.08848446488877926
NNENKKETD	9	Unmodified	_NNENKKETD_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	OvCa9_classI_Rep3	3	546.2528686523438	2	546.251817	1090.48908	0.83946	0.00045855	2.4219	0.001323	3.2613	0.0017815	546.252954781133	120.47	3.1949	119.44	119.02	122.21	-1.0271					129	61	5	0	0	0	0.2422	1	9185	9185		69.628	3.1983	1	501180			40725	3261	33602	33626	44070	44070					-0.05254421535050824
NNFEMLTHL	9	Unmodified	_NNFEMLTHL_					0	0	0		ENST00000532983.1_1_16:30291089-30291266:-|nuORF	ENST00000532983.1_1_16:30291089-30291266:-|nuORF	ENST00000532983.1_1_16:30291089-30291266:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.7958374023438	2	559.768591	1117.52263	1.8462	0.0010334	1.7983	0.0010066	3.6445	0.0020401	559.7721652545418	84.577	0.13956	81.914	81.822	81.961	-2.6629					4	2	2	0	0	0	0.027441	1	7076	7076		58.782	19.976	1	12781			40726	13332	33603	33627	44071	44071					-0.031430912968289704
NNFGDLINDL	10	Unmodified	_NNFGDLINDL_					0	0	0			REV__tr|A0A7D7A0Y9|A0A7D7A0Y9_9CLOTDUF1493familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11570PE=4SV=1	REV__tr|A0A7D7A0Y9|A0A7D7A0Y9_9CLOTDUF1493familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11570PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.7767333984375	2	567.774928	1133.5353	-0.86752	-0.00049256	4.2195	0.0023957	3.352	0.0019032	567.7771994508223	121.62	2.1249	121.42	121.15	123.27	-0.19719					95	42	4	0	0	0	0.36605	1	11752	11752		72.879	18.157	1	400470	+		40727	32462	33604	33628	44072	44072					-0.026123566329715686
NNFNYIIF	8	Unmodified	_NNFNYIIF_					0	0	0			REV__tr|A0A7D6ZXT7|A0A7D6ZXT7_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_00400PE=4SV=1	REV__tr|A0A7D6ZXT7|A0A7D6ZXT7_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_00400PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.3187255859375	2	522.761092	1043.50763	-0.10559	-5.52E-05	-2.5565	-0.0013364	-2.6621	-0.0013916	522.758810249291	66.719	0.92207	66.719	66.174	67.096	0					46	22	4	0	0	0	0.028476	1	6217	6217		26.796	1.222	1	440940	+		40728	32344	33605	33629	44073	44073					-0.01238215102534923
NNFPLGILT	9	Unmodified	_NNFPLGILT_					0	0	0			REV__ENST00000495482.1_1_1:44386060-44395890:+|nuORF	REV__ENST00000495482.1_1_1:44386060-44395890:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.799072265625	2	494.776742	987.538931	0.3759	0.00018599	-2.4854	-0.0012297	-2.1095	-0.0010437	494.77527324948363	81.308	0.53368	81.308	81.08	81.613	0					30	12	4	0	0	0	0.027462	1	8345	8345		21.96	0	1	1212500	+		40729	18772	33606	33630	44074	44074					0.0446635793156247
NNGCIVTI	8	Unmodified	_NNGCIVTI_					0	0	0			REV__tr|A0A7D6VPP9|A0A7D6VPP9_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19585PE=3SV=1	REV__tr|A0A7D6VPP9|A0A7D6VPP9_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19585PE=3SV=1	MSMS	OvCa99_classI_Rep5	1	417.2148132324219	2	417.212921	832.411288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.33	1	122.33	121.83	122.83	0								0	0	0	0.30129	1	14087	14087		45.952	5.3793	1		+		40730	31264	33607	33631	44075	44075					-0.011621059341223372
NNGGTLRALV	10	Unmodified	_NNGGTLRALV_					0	0	0		tr|A0A7D6VWY2|A0A7D6VWY2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10090PE=4SV=1	tr|A0A7D6VWY2|A0A7D6VWY2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10090PE=4SV=1	tr|A0A7D6VWY2|A0A7D6VWY2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10090PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7897644042969	2	507.788173	1013.56179	-0.34924	-0.00017734	-0.44397	-0.00022544	-0.79321	-0.00040278	507.78796796196445	47.165	1.8311	44.093	43.604	45.435	-3.0724					104	35	4	0	0	0	0.65434	1	2548	2548		35.618	2.8059	1	3261100			40731	35264	33608	33632	44076	44076					0.05555377049040544
NNGKIKVEP	9	Unmodified	_NNGKIKVEP_					0	0	0			REV__nc|ENSG00000103599|Q86VS3-3|IQCH	REV__nc|ENSG00000103599|Q86VS3-3|IQCH	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.9433288574219	2	499.785099	997.555644	0.0011556	5.7753E-07	-1.7202	-0.00085974	-1.7191	-0.00085916	499.784217498405	80.301	1.2446	78.606	78.124	79.368	-1.6951					52	24	3	0	0	0	0.027433	1	6838	6838		51.335	1.8939	1	101640	+		40732	17627	33609	33633	44077	44077					0.05676858817514585
NNGNRRSGLA	10	Unmodified	_NNGNRRSGLA_					0	0	0			REV__ENST00000483694.1_1_1:15639557-15640970:+|nuORF	REV__ENST00000483694.1_1_1:15639557-15640970:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	529.7762451171875	2	529.776128	1057.5377	0.77441	0.00041026	0.946	0.00050117	1.7204	0.00091143	529.7765750609487	128.34	1.2351	127.25	126.97	128.21	-1.0933					47	24	3	0	0	0	0.64697	1	10100	10100		36.447	0.82846	1	96759	+		40733	26532	33610	33634	44078	44078					0.011235366153869109
NNGSVITYKL	10	Unmodified	_NNGSVITYKL_					0	0	0			REV__nc|ENSG00000184226|Q9HC56-2|PCDH9	REV__nc|ENSG00000184226|Q9HC56-2|PCDH9	MULTI-MSMS	OvCa99_classI_Rep5	1	554.8063354492188	2	554.803488	1107.59242	1.2034	0.00066764	3.7007	0.0020531	4.904	0.0027208	554.805474251728	155.03	0.80441	155.03	154.72	155.53	0					26	15	3	0	0	0	0.5635	1	18171	18171		46.457	8.6453	1	78362	+		40734	22415	33611	33635	44079	44079					0.0429311064342528
NNIAIRSVTEP	11	Unmodified	_NNIAIRSVTEP_					0	0	0		tr|A0A553SFT7|A0A553SFT7_NIACIRecombinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09505PE=4SV=1	tr|A0A553SFT7|A0A553SFT7_NIACIRecombinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09505PE=4SV=1	tr|A0A553SFT7|A0A553SFT7_NIACIRecombinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09505PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	606.8173828125	2	607.330402	1212.64625	0.95927	0.0005826	1.9494	0.0011839	2.9086	0.0017665	607.331423061336	96.891	1.0166	95.062	94.827	95.844	-1.8286					32	19	2	0	0	0	0.025597	1	6373	6373		60.118	7.1816	1	165810			40735	33076	33612	33636	44080	44080					0.04843283075160798
NNIFAQAID	9	Unmodified	_NNIFAQAID_					0	0	0		tr|A0A553SRP8|A0A553SRP8_NIACI2,3-butanedioldehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_01340PE=3SV=1	tr|A0A553SRP8|A0A553SRP8_NIACI2,3-butanedioldehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_01340PE=3SV=1	tr|A0A553SRP8|A0A553SRP8_NIACI2,3-butanedioldehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_01340PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.7679443359375	2	503.253631	1004.49271	1.6824	0.00084665	1.3156	0.0006621	2.998	0.0015088	503.25437613939226	93.176	0.33674	93.176	92.968	93.305	0					14	7	3	0	0	0	0.027462	1	10110	10110		31.53	7.3271	1	189300			40736	34285	33613	33637	44081	44081					-0.009357069705288268
NNILLPILK	9	Unmodified	_NNILLPILK_					0	0	0			REV__tr|A0A7D6ZT72|A0A7D6ZT72_9CLOTdTDP-glucose4,6-dehydrataseOS=ClostridiumintestinaleOX=36845GN=rfbBPE=3SV=1	REV__tr|A0A7D6ZT72|A0A7D6ZT72_9CLOTdTDP-glucose4,6-dehydrataseOS=ClostridiumintestinaleOX=36845GN=rfbBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.312255859375	2	519.33951	1036.66447	1.0429	0.00054162	-1.859	-0.00096547	-0.81612	-0.00042384	519.3389106600196	85.529	1.1825	82.883	82.411	83.593	-2.6463					26	23	2	0	0	0	0.027462	1	7273	7273		37.159	3.6435	1	54678	+		40737	32199	33614	33638	44082	44082					0.14760069787803332
NNILSDKAVI	10	Unmodified	_NNILSDKAVI_					0	0	0			REV__tr|A0A7D7A1I3|A0A7D7A1I3_9CLOTDUF948domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15460PE=4SV=1	REV__tr|A0A7D7A1I3|A0A7D7A1I3_9CLOTDUF948domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15460PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7880859375	2	543.811313	1085.60807	1.9542	0.0010627	-0.090687	-4.9316E-05	1.8635	0.0010134	543.8112134640451	112.82	0.85535	112.82	112.43	113.29	0					36	18	3	0	0	0	0.027363	1	12895	12895		75.043	23.708	1	481640	+		40738	32494	33615	33639	44083	44083					0.06869397160448898
NNIVVLLQT	9	Unmodified	_NNIVVLLQT_					0	0	0		ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.2818603515625	2	507.303124	1012.5917	-1.0952	-0.0005556	-2.5899	-0.0013139	-3.6851	-0.0018695	507.3029231979275	81.483	0.19691	78.772	78.641	78.838	-2.7106					5	3	2	0	0	0	0.027462	1	6693	6693		19.997	0	1	6826.4			40739	4889	33616	33640	44084	44084					0.08590315994376851
NNKEAFSV	8	Unmodified	_NNKEAFSV_					0	0	0		ENST00000536306.5_1_12:122967212-122983396:-|nuORF;ENST00000540586.1_1_12:122967996-122984530:-|nuORF;ENST00000543897.5_2_12:122967996-122983396:-|nuORF;ENSG00000033030|ENST00000633063|ZCCHC8	ENST00000536306.5_1_12:122967212-122983396:-|nuORF	ENST00000536306.5_1_12:122967212-122983396:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	453.7754211425781	2	454.727249	907.439946	0.46283	0.00021046	0.58975	0.00026817	1.0526	0.00047863	454.7271889050493	57.508	0.86628	54.163	53.73	54.596	-3.3449					28	16	2	0	0	0	0.028476	1	3693	3693		30.504	0	1	60298			40740	1072	33617	33641	44085	44085					-0.01747665033337853
NNKHRLELT	9	Unmodified	_NNKHRLELT_					0	0	0			REV__ENST00000262494.12_3_16:56380485-56380713:+|nuORF	REV__ENST00000262494.12_3_16:56380485-56380713:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	562.814697265625	2	562.812179	1123.60981	-0.9656	-0.00054345	3.247	0.0018275	2.2814	0.001284	562.813897286719	140.98	1.3862	140.75	140.43	141.82	-0.22696					80	27	4	0	0	0	0.42676	1	14133	14133		49.442	1.7842	1	329770	+		40741	23977	33618	33642	44086	44086					0.05294450969063291
NNKIYIIR	8	Unmodified	_NNKIYIIR_					0	0	0			REV__tr|A0A7D6ZN19|A0A7D6ZN19_9CLOTBeta-propellerdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14325PE=4SV=1	REV__tr|A0A7D6ZN19|A0A7D6ZN19_9CLOTBeta-propellerdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14325PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.7974853515625	2	517.311284	1032.60801	-0.44193	-0.00022862	1.8048	0.00093363	1.3628	0.00070502	517.3112489088605	71.107	0.67367	71.107	70.915	71.589	0					26	16	3	0	0	0	0.028476	1	6924	6924		65.803	7.0212	1	185120	+		40742	32114	33619	33643	44087	44087					0.09301441951129163
NNKLTVLPD	9	Unmodified	_NNKLTVLPD_					0	0	0		ENSG00000180979|ENST00000397130|LRRC57	ENSG00000180979|ENST00000397130|LRRC57	ENSG00000180979|ENST00000397130|LRRC57	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.2837219238281	2	507.284931	1012.55531	-1.4224	-0.00072155	1.4339	0.0007274	0.011541	5.8547E-06	507.28520803354843	82.57	1.2378	80.274	79.938	81.176	-2.2963					38	24	2	0	0	0	0.02744	1	4689	4689		62.107	19.243	1	144920			40743	7906	33620	33644	44088	44088					0.04953439097653245
NNKNSGFWH	9	Unmodified	_NNKNSGFWH_					0	0	0		ENSG00000136827|ENST00000351698|TOR1A	ENSG00000136827|ENST00000351698|TOR1A	ENSG00000136827|ENST00000351698|TOR1A	MULTI-SECPEP	OvCa9_classI_Rep3	3	552.3032836914062	2	552.254497	1102.49444	-0.92279	-0.00050962	3.6483	0.0020148	2.7255	0.0015052	552.2569031486476	102.65	0.52069	101.13	100.74	101.26	-1.5211					14	9	2	0	0	0	0.027017	1	7060	7060		104.75	0	1	15300			40744	4520	33621	33645	44089	44089					-0.052706531619151065
NNKTLYIQ	8	Unmodified	_NNKTLYIQ_					0	0	0		tr|A0A553SJG4|A0A553SJG4_NIACIFe-SclusterassemblyproteinSufDOS=NialliacirculansOX=1397GN=sufDPE=3SV=1	tr|A0A553SJG4|A0A553SJG4_NIACIFe-SclusterassemblyproteinSufDOS=NialliacirculansOX=1397GN=sufDPE=3SV=1	tr|A0A553SJG4|A0A553SJG4_NIACIFe-SclusterassemblyproteinSufDOS=NialliacirculansOX=1397GN=sufDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.27337646484375	2	497.271824	992.529095	-2.6084	-0.0012971	1.4574	0.00072474	-1.1509	-0.00057232	497.27241152127726	88.121	1.3594	85.518	84.977	86.336	-2.6027					67	26	3	0	0	0	0.48084	1	7514	7514		79.451	9.8234	1	330200			40745	33500	33622	33646	44090	44090					0.032531699261767244
NNKVALISL	9	Unmodified	_NNKVALISL_					0	0	0		tr|A0A7D7AHI5|A0A7D7AHI5_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14900PE=3SV=1	tr|A0A7D7AHI5|A0A7D7AHI5_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14900PE=3SV=1	tr|A0A7D7AHI5|A0A7D7AHI5_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14900PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	486.29840087890625	2	486.297842	970.581131	1.726	0.00083934	0.31788	0.00015458	2.0439	0.00099392	486.2978112450845	110.94	0.9815	110.94	110.67	111.65	0					43	21	3	0	0	0	0.19758	1	12592	12592		76.774	2.7994	1	982440			40746	36274	33623	33647	44091	44091					0.09466333339958055
NNKVIFYF	8	Unmodified	_NNKVIFYF_					0	0	0		tr|A0A7D6ZGB4|A0A7D6ZGB4_9CLOTStage0sporulationfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21510PE=4SV=1	tr|A0A7D6ZGB4|A0A7D6ZGB4_9CLOTStage0sporulationfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21510PE=4SV=1	tr|A0A7D6ZGB4|A0A7D6ZGB4_9CLOTStage0sporulationfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21510PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.8125610351562	2	522.779285	1043.54402	-0.69987	-0.00036588	0.72181	0.00037735	0.021939	1.1469E-05	522.779139240381	68.664	1.041	66.044	65.474	66.515	-2.6203					28	20	3	0	0	0	0.028476	1	5379	5379		20.482	6.3447	1	23985			40747	35538	33624	33648	44092	44092					0.023986617941545774
NNLAEKAK	8	Unmodified	_NNLAEKAK_					0	0	0		ENSG00000101306|ENST00000375985|MYLK2	ENSG00000101306|ENST00000375985|MYLK2	ENSG00000101306|ENST00000375985|MYLK2	MSMS	OvCa9_classI_Rep2	2	444.2504577636719	2	444.250892	886.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.805	1	62.081	61.581	62.581	-2.7245								0	0	0	0.30129	1	4955	4955		63.306	0	1				40748	2162	33625	33649	44093	44093					0.03944614237661881
NNLFRPRV	8	Unmodified	_NNLFRPRV_					0	0	0		ENSG00000158301|ENST00000483720|GPRASP2	ENSG00000158301|ENST00000483720|GPRASP2	ENSG00000158301|ENST00000483720|GPRASP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.7982177734375	2	508.293425	1014.5723	-0.062838	-3.194E-05	1.5554	0.0007906	1.4926	0.00075866	508.2932732188322	101.75	0.67826	101.75	101.27	101.95	0					23	15	3	0	0	0	0.028476	1	11346	11346		30.504	0	1	371120			40749	5945	33626	33650	44094	44094					0.06559404494134924
NNLIPEWND	9	Unmodified	_NNLIPEWND_					0	0	0		tr|A0A7D6VQ09|A0A7D6VQ09_9CLOTGlutamatesynthasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=HZF06_00995PE=4SV=1	tr|A0A7D6VQ09|A0A7D6VQ09_9CLOTGlutamatesynthasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=HZF06_00995PE=4SV=1	tr|A0A7D6VQ09|A0A7D6VQ09_9CLOTGlutamatesynthasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=HZF06_00995PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.9275512695312	2	557.76182	1113.50909	1.6847	0.00093966	1.4082	0.00078543	3.0929	0.0017251	558.2623988207059	146.77	0.19864	146.77	146.62	146.82	0					5	3	2	0	0	0	0.027462	1	17151	17151		44.117	3.3386	1	20698			40750	34814	33627	33651	44095	44095					-0.043126258044367205
NNLIRDLAEE	10	Unmodified	_NNLIRDLAEE_					0	0	0			REV__tr|A0A7D6VVS5|A0A7D6VVS5_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13610PE=4SV=1	REV__tr|A0A7D6VVS5|A0A7D6VVS5_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13610PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	593.8079223632812	2	593.806759	1185.59897	-0.96533	-0.00057322	-0.046235	-2.7454E-05	-1.0116	-0.00060067	593.8068862261109	84.543	1.3672	82.283	81.927	83.295	-2.261					95	27	5	0	0	0	0.5635	1	4915	4915		46.457	2.0796	1	607860	+		40751	31734	33628	33652	44096	44096					0.01359003804122949
NNLLGKFEL	9	Unmodified	_NNLLGKFEL_					0	0	0		nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000109971|ENST00000534624|HSPA8;ENST00000532091.1_1_11:122929265-122929517:-|nuORF	nc|ENSG00000109971|P11142-2|HSPA8	nc|ENSG00000109971|P11142-2|HSPA8	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.811767578125	2	524.295299	1046.57605	-0.58186	-0.00030507	2.0821	0.0010916	1.5002	0.00078656	524.2962087452627	60.205	0.5278	57.435	57.238	57.766	-2.7702					14	9	2	0	0	0	0.027441	1	4441	4441		68.787	10.557	1	10502			40752	2745	33629	33653	44097	44097					0.05462029477325814
NNLNLLILN	9	Unmodified	_NNLNLLILN_					0	0	0			REV__ENSG00000214954|ENST00000448384|LRRC69	REV__ENSG00000214954|ENST00000448384|LRRC69	MULTI-MSMS	OvCa9_classI_Rep2	2	520.8077392578125	2	520.808574	1039.60259	-0.75387	-0.00039262	-0.26291	-0.00013692	-1.0168	-0.00052955	520.8086564098226	117.01	1.684	116.88	116.47	118.15	-0.12869					113	33	7	0	0	0	0.38529	1	11185	11185		53.351	0	1	478140	+		40753	23306	33630	33654	44098	44098					0.08437718368691094
NNLPMQPPV	9	Unmodified	_NNLPMQPPV_					0	0	0		nc|ENSG00000007372|P26367|PAX6;ENSG00000007372|ENST00000640368|PAX6	nc|ENSG00000007372|P26367|PAX6	nc|ENSG00000007372|P26367|PAX6	MULTI-SECPEP	OvCa9_classI_Rep3	3	504.2969970703125	2	505.260402	1008.50625	-0.11381	-5.7505E-05	1.3755	0.00069497	1.2617	0.00063747	505.26132706688213	104.69	1.247	103.25	102.86	104.11	-1.4347					36	23	2	0	0	0	0.027456	1	7352	7352		23.042	0	1	60059			40754	900	33631	33655	44099	44099					0.0023382753706755466
NNLPRRKGKGV	11	Unmodified	_NNLPRRKGKGV_					0	0	0			REV__nc|ENSG00000183765|O96017-5|CHEK2	REV__nc|ENSG00000183765|O96017-5|CHEK2	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8762817382812	2	619.875645	1237.73674	0.95751	0.00059354	0.82814	0.00051335	1.7857	0.0011069	619.8763018361122	140.29	1.1669	138.8	138.2	139.37	-1.4952					41	22	3	0	0	0	0.70865	1	13668	13668		26.693	0	1	37394	+		40755	22383	33632	33656	44100	44100					0.1273779691407526
NNLSEPRLV	9	Unmodified	_NNLSEPRLV_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.291015625	2	521.288005	1040.56146	-0.73639	-0.00038387	4.3556	0.0022705	3.6192	0.0018867	521.2902035850618	103.32	1.6735	101.12	100.52	102.19	-2.1994					102	31	6	0	0	0	0.42676	1	9323	9323		49.442	5.3247	1	495090	+		40756	22537	33633	33657	44101	44101					0.04279957329163153
NNLSEPRLV	9	Unmodified	_NNLSEPRLV_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.288005	1040.56146	-0.82969	-0.00043251	3.8422	0.0020029	3.0125	0.0015704	521.2901576669489	101.87	1.3853	101.11	100.67	102.05	-0.76401	-0.02287	-7.7351E-05	NaN	49.442	90	27	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	328740	+		40757	22537	33633	33657							0.04279957329163153
NNLSEPRLV	9	Unmodified	_NNLSEPRLV_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-MATCH	OvCa9_classI_Rep3	3		2	521.288005	1040.56146	-0.30242	-0.00015765	3.648	0.0019017	3.3456	0.001744	521.2898753165977	102.68	1.726	101.16	100.63	102.36	-1.5211	0.028071	-0.00027982	NaN	49.442	76	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	407510	+		40758	22537	33633	33657							0.04279957329163153
NNLTKAVDAF	10	Unmodified	_NNLTKAVDAF_					0	0	0		nc|ENSG00000092931|O43934-2|MFSD11;ENSG00000092931|ENST00000685175|MFSD11	nc|ENSG00000092931|O43934-2|MFSD11	nc|ENSG00000092931|O43934-2|MFSD11	MULTI-MSMS	OvCa99_classI_Rep5	1	546.7890014648438	2	546.787838	1091.56112	1.7347	0.00094849	-0.48389	-0.00026459	1.2508	0.00068391	546.7875042857248	128.14	2.3869	128.14	127.76	130.15	0					70	50	2	0	0	0	0.37436	1	14855	14855		71.877	13.648	1	707900			40759	1904	33634	33658	44102	44102					0.01900537609321873
NNLTKAVDAF	10	Unmodified	_NNLTKAVDAF_					0	0	0		nc|ENSG00000092931|O43934-2|MFSD11;ENSG00000092931|ENST00000685175|MFSD11	nc|ENSG00000092931|O43934-2|MFSD11	nc|ENSG00000092931|O43934-2|MFSD11	MULTI-MSMS	OvCa99_classI_Rep5	1	546.7896728515625	2	546.787838	1091.56112	0.93582	0.0005117	0.74222	0.00040584	1.678	0.00091753	546.7881225030743	155.8	2.8358	155.8	155.12	157.96	0					140	55	3	0	0	0	0.47142	1	18309	18309		58.23	12.258	1	297140			40760	1904	33634	33658	44103	44103					0.01900537609321873
NNLVNLKSL	9	Unmodified	_NNLVNLKSL_					0	0	0			REV__ENSG00000092439|ENST00000646667|TRPM7	REV__ENSG00000092439|ENST00000646667|TRPM7	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.2657165527344	2	507.800749	1013.58694	0.32262	0.00016383	-1.5042	-0.00076384	-1.1816	-0.00060001	507.79957026800076	86.929	1.4376	85.498	84.751	86.189	-1.4311					51	27	2	0	0	0	0.027433	1	7595	7595		45.972	0	1	70191	+		40761	17267	33635	33659	44104	44104					0.08069431851606623
NNLYLETL	8	Unmodified	_NNLYLETL_					0	0	0			REV__ENSG00000205858|ENST00000401542|LRRC72	REV__ENSG00000205858|ENST00000401542|LRRC72	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.2779235839844	2	490.258382	978.502212	-0.18936	-9.2837E-05	1.1607	0.00056906	0.97138	0.00047623	490.25866388644243	71.616	0.52739	71.616	71.389	71.916	0					23	12	3	0	0	0	0.028476	1	6973	6973		25.45	6.0902	1	587550	+		40762	23230	33636	33660	44105	44105					0.012100613150096251
NNLYRGKPV	9	Unmodified	_NNLYRGKPV_					0	0	0		ENST00000357742.8_1_15:94857559-94858785:+|nuORF	ENST00000357742.8_1_15:94857559-94858785:+|nuORF	ENST00000357742.8_1_15:94857559-94858785:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	530.801513671875	2	530.79854	1059.58253	1.2176	0.00064629	2.9104	0.0015449	4.128	0.0021912	530.8000080739153	145.27	2.0248	145.27	144.99	147.01	0					112	41	4	0	0	0	0.31747	1	17018	17018		60.972	7.6205	1	1202100			40763	10722	33637	33661	44106	44106					0.055119674287197995
NNNAPTHEI	9	Unmodified	_NNNAPTHEI_					0	0	0		tr|A0A553SS87|A0A553SS87_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_02630PE=4SV=1	tr|A0A553SS87|A0A553SS87_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_02630PE=4SV=1	tr|A0A553SS87|A0A553SS87_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_02630PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.8210754394531	2	505.238513	1008.46247	-0.83371	-0.00042122	0.28773	0.00014537	-0.54597	-0.00027585	505.23842422174397	104.27	1.1959	102.16	101.85	103.05	-2.1192					41	22	3	0	0	0	0.027459	1	9413	9413		62.107	14.192	1	112030			40764	34344	33638	33662	44107	44107					-0.04142065635721792
NNNEGLYLV	9	Unmodified	_NNNEGLYLV_					0	0	0		tr|A0A7D6ZHM8|A0A7D6ZHM8_9CLOTUPF0182proteinHZF06_00075OS=ClostridiumintestinaleOX=36845GN=HZF06_00075PE=3SV=1	tr|A0A7D6ZHM8|A0A7D6ZHM8_9CLOTUPF0182proteinHZF06_00075OS=ClostridiumintestinaleOX=36845GN=HZF06_00075PE=3SV=1	tr|A0A7D6ZHM8|A0A7D6ZHM8_9CLOTUPF0182proteinHZF06_00075OS=ClostridiumintestinaleOX=36845GN=HZF06_00075PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.2947387695312	2	518.258914	1034.50327	0.58223	0.00030175	-4.4302	-0.002296	-3.8479	-0.0019942	518.255376759701	92.692	0.51822	91.524	91.288	91.806	-1.168					14	9	2	0	0	0	0.027447	1	8265	8265		56.721	3.3696	1	27130			40765	35582	33639	33663	44108	44108					-0.012597243161053484
NNNEILDEI	9	Unmodified	_NNNEILDEI_					0	0	0			REV__tr|A0A7D6VVE1|A0A7D6VVE1_9CLOTChromosomepartitionproteinSmcOS=ClostridiumintestinaleOX=36845GN=smcPE=3SV=1	REV__tr|A0A7D6VVE1|A0A7D6VVE1_9CLOTChromosomepartitionproteinSmcOS=ClostridiumintestinaleOX=36845GN=smcPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.80029296875	2	537.259111	1072.50367	2.3818	0.0012796	0.22026	0.00011834	2.602	0.001398	537.2604439103462	106.44	0.44415	106.44	106.23	106.67	0					14	9	2	0	0	0	0.02741	1	12011	12011		51.335	0	1	172350	+		40766	31716	33640	33664	44109	44109					-0.02968349386924274
NNNIFTIA	8	Unmodified	_NNNIFTIA_					0	0	0			REV__ENSG00000118197|ENST00000331314|DDX59	REV__ENSG00000118197|ENST00000331314|DDX59	MULTI-SECPEP	OvCa9_classI_Rep4_	4	453.2828674316406	2	453.737617	905.460681	0.61814	0.00028047	-1.1293	-0.00051243	-0.51121	-0.00023195	453.73703222276987	83.588	0.91705	80.925	80.632	81.549	-2.6629					31	18	3	0	0	0	0.028476	1	6928	6928		40.573	8.6178	1	74938	+		40767	18383	33641	33665	44110	44110					0.004169253463373934
NNNILIITI	9	Unmodified	_NNNILIITI_					0	0	0			REV__tr|A0A553SJQ5|A0A553SJQ5_NIACI2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylatesynthaseOS=NialliacirculansOX=1397GN=menDPE=3SV=1	REV__tr|A0A553SJQ5|A0A553SJQ5_NIACI2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylatesynthaseOS=NialliacirculansOX=1397GN=menDPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.7803955078125	2	514.310949	1026.60735	-0.65086	-0.00033475	0.91166	0.00046887	0.26079	0.00013413	514.3107410746953	74.382	0.90295	71.151	70.531	71.434	-3.2308					34	18	3	0	0	0	0.027455	1	5831	5831		34.173	3.8548	1	48121	+		40768	30029	33642	33666	44111	44111					0.09510602511431898
NNNILIITI	9	Unmodified	_NNNILIITI_					0	0	0			REV__tr|A0A553SJQ5|A0A553SJQ5_NIACI2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylatesynthaseOS=NialliacirculansOX=1397GN=menDPE=3SV=1	REV__tr|A0A553SJQ5|A0A553SJQ5_NIACI2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylatesynthaseOS=NialliacirculansOX=1397GN=menDPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.310949	1026.60735	-0.072668	-3.7374E-05	-3.3935	-0.0017453	-3.4662	-0.0017827	514.3091460375651	73.361	0.15704	70.962	70.844	71.001	-2.3999	-0.094778	-0.0011153	NaN	42.396	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6271.1	+		40769	30029	33642	33666							0.09510602511431898
NNNIMINKF	9	Unmodified	_NNNIMINKF_					0	0	0			REV__tr|A0A553SJ61|A0A553SJ61_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_16185PE=4SV=1	REV__tr|A0A553SJ61|A0A553SJ61_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_16185PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	553.8095092773438	2	554.284408	1106.55426	-0.80489	-0.00044614	3.2754	0.0018155	2.4705	0.0013693	554.7871397059328	98.236	0.25768	96.477	96.262	96.52	-1.7595					6	4	2	0	0	0	0.027417	1	6542	6542		55.504	16.698	1	15956	+		40770	29970	33643	33667	44112	44112					0.005249014571063526
NNNITITVDNT	11	Unmodified	_NNNITITVDNT_					0	0	0		tr|A0A7D7A290|A0A7D7A290_9CLOTDiscoidindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07485PE=3SV=1	tr|A0A7D7A290|A0A7D7A290_9CLOTDiscoidindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07485PE=3SV=1	tr|A0A7D7A290|A0A7D7A290_9CLOTDiscoidindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07485PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.5865783691406	3	406.870208	1217.58879	0.32732	0.00013318	2.3675	0.00096328	2.6949	0.0010965	407.2049021237688	34.176	0.42732	34.176	34.017	34.444	0					12	8	3	0	0	0	0.025814	1	1612	1612		10.145	3.8236	1	21297			40771	36067	33644	33668	44113	44113					-0.011296039211174502
NNNPLALMA	9	Unmodified	_NNNPLALMA_					0	0	0		nc|ENSG00000152520|Q58A45-2|PAN3;nc|ENSG00000152520|Q58A45-4|PAN3;ENST00000503791.5_1_13:28712794-28846220:+|nuORF;nc|ENSG00000152520|Q58A45-3|PAN3;ENSG00000152520|ENST00000380958|PAN3	nc|ENSG00000152520|Q58A45-2|PAN3	nc|ENSG00000152520|Q58A45-2|PAN3	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.8200378417969	2	479.244752	956.474951	2.5394	0.001217	-3.8276	-0.0018344	-1.2882	-0.00061738	479.2430135707405	91.549	0.42268	91.549	91.372	91.794	0					16	9	2	0	0	0	0.027462	1	9848	9848		31.955	12.595	1	300350			40772	5629	33645	33669	44114	44114					-0.005027454970445433
NNNSKWKT	8	Unmodified	_NNNSKWKT_					0	0	0		nc|ENSG00000164465|Q8N8Z6-2|DCBLD1;ENSG00000164465|ENST00000338728|DCBLD1;ENST00000533453.5_1_6:117860476-117860575:+|nuORF;ENST00000534777.5_1_6:117860476-117866721:+|nuORF	nc|ENSG00000164465|Q8N8Z6-2|DCBLD1	nc|ENSG00000164465|Q8N8Z6-2|DCBLD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.3026428222656	2	496.251423	990.488293	1.9121	0.00094889	0.66254	0.00032879	2.5746	0.0012777	496.25167166421693	91.987	0.25558	91.987	91.837	92.092	0					7	5	2	0	0	0	0.028476	1	9932	9932		38.806	7.2763	1	250880			40773	6460	33646	33670	44115	44115					-0.007331713934377149
NNNTLIGEI	9	Unmodified	_NNNTLIGEI_					0	0	0		tr|A0A7D6VQ84|A0A7D6VQ84_9CLOTAryl-sulfatesulfotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19800PE=4SV=1	tr|A0A7D6VQ84|A0A7D6VQ84_9CLOTAryl-sulfatesulfotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19800PE=4SV=1	tr|A0A7D6VQ84|A0A7D6VQ84_9CLOTAryl-sulfatesulfotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19800PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	494.2583312988281	2	494.258914	986.503274	-0.36119	-0.00017852	0.31871	0.00015753	-0.042474	-2.0993E-05	494.2588183788663	68.64	0.66303	68.64	68.356	69.019	0					29	15	3	0	0	0	0.38969	1	6500	6500		52.937	1.744	1	1295600			40774	34828	33647	33671	44116	44116					0.009482756839133799
NNNVKLLT	8	Unmodified	_NNNVKLLT_					0	0	0		GGA1|p.Y253Sfs*25|1|0.22|ENSG00000100083|chr22:37623559-37623559|A/-|frameshift_variant;nc|ENSG00000100083|Q9UJY5-4|GGA1;nc|ENSG00000100083|Q9UJY5-3|GGA1;nc|ENSG00000100083|Q9UJY5-2|GGA1;ENSG00000100083|ENST00000343632|GGA1;nc|ENSG00000100083|Q9UJY5-6|GGA1	GGA1|p.Y253Sfs*25|1|0.22|ENSG00000100083|chr22:37623559-37623559|A/-|frameshift_variant	GGA1|p.Y253Sfs*25|1|0.22|ENSG00000100083|chr22:37623559-37623559|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	457.7701110839844	2	458.266542	914.51853	-0.75487	-0.00034593	-4.1899	-0.0019201	-4.9448	-0.002266	458.263972456463	80.251	0.68513	77.541	77.269	77.954	-2.7106					16	13	2	0	0	0	0.028476	1	6527	6527		17.365	0	1	20246			40775	2004	33648	33672	44117	44117					0.05785187271760606
NNPIKFACR	9	Unmodified	_NNPIKFACR_					0	0	0			REV__ENST00000468370.5_1_14:30107689-30135322:-|nuORF	REV__ENST00000468370.5_1_14:30107689-30135322:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.302734375	2	531.779293	1061.54403	-0.59279	-0.00031523	-4.3249	-0.0022999	-4.9177	-0.0026151	531.7768482141686	122.65	0.89267	121.28	121.06	121.95	-1.3666					28	17	2	0	0	0	0.027462	1	11574	11574		23.042	0	1	85731	+		40776	18271	33649	33673	44118	44118					0.015723385225328457
NNPLGSLVIT	10	Unmodified	_NNPLGSLVIT_					0	0	0		ENSG00000113211|ENST00000231136|PCDHB6	ENSG00000113211|ENST00000231136|PCDHB6	ENSG00000113211|ENST00000231136|PCDHB6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.8281860351562	2	514.292756	1026.57096	0.899	0.00046235	-2.0942	-0.001077	-1.1952	-0.00061468	514.2922955336778	67.981	1.0768	64.49	64.186	65.262	-3.4902					46	21	3	0	0	0	0.026606	1	5074	5074		52.937	18.764	1	217490			40777	2954	33650	33674	44119	44119					0.058737256147196604
NNPLGSLVIT	10	Unmodified	_NNPLGSLVIT_					0	0	0		ENSG00000113211|ENST00000231136|PCDHB6	ENSG00000113211|ENST00000231136|PCDHB6	ENSG00000113211|ENST00000231136|PCDHB6	MULTI-MATCH	OvCa99_classI_Rep5	1		2	514.292756	1026.57096	-0.0035726	-1.8374E-06	-0.10333	-5.3143E-05	-0.10691	-5.4981E-05	514.2925849191374	64.827	0.55832	64.827	64.631	65.19	0	0.17557	0.00028836	NaN	62.107	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1920100			40778	2954	33650	33674							0.058737256147196604
NNPWQRPS	8	Unmodified	_NNPWQRPS_					0	0	0		ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3;nc|ENSG00000144357|Q6ZT12-2|UBR3;ENST00000430321.5_1_2:170821003-170871346:+|nuORF	ENSG00000144357|ENST00000272793|UBR3	ENSG00000144357|ENST00000272793|UBR3	MULTI-MSMS	OvCa99_classI_Rep5	1	499.745849609375	2	499.743765	997.472977	0.39805	0.00019892	0.16222	8.1066E-05	0.56027	0.00027999	499.7437756189744	161.41	1.4646	161.41	160.4	161.87	0					22	12	4	0	0	0	0.61436	1	18928	18928		60.972	7.6205	1	46361			40779	5144	33651	33675	44120	44120					-0.025860381906113616
NNQALVHPNP	10	Unmodified	_NNQALVHPNP_					0	0	0		nc|ENSG00000119682|O15033-2|AREL1;ENST00000557401.5_1_14:75130603-75152321:-|nuORF;ENSG00000119682|ENST00000356357|AREL1	nc|ENSG00000119682|O15033-2|AREL1	nc|ENSG00000119682|O15033-2|AREL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3358154296875	2	552.283254	1102.55196	1.4752	0.00081473	1.3592	0.00075069	2.8344	0.0015654	552.2839511250352	130.15	0.42612	130.15	129.91	130.34	0					11	8	2	0	0	0	0.027088	1	15094	15094		9.1829	0	1	53973			40780	3380	33652	33676	44121	44121					0.004781890436561298
NNQDEEANEI	10	Unmodified	_NNQDEEANEI_					0	0	0		tr|A0A553SQZ5|A0A553SQZ5_NIACIROKfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00015PE=4SV=1	tr|A0A553SQZ5|A0A553SQZ5_NIACIROKfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00015PE=4SV=1	tr|A0A553SQZ5|A0A553SQZ5_NIACIROKfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00015PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	588.2424926757812	2	588.244189	1174.47382	0.56337	0.0003314	-4.2599	-0.0025059	-3.6965	-0.0021745	588.2414683344155	160	0.93893	160	159.62	160.56	0					55	18	5	0	0	0	0.66944	1	18739	18739		33.922	0.40605	1	407040			40781	34211	33653	33677	44122	44122					-0.10643333122902732
NNQFTKKQN	9	Unmodified	_NNQFTKKQN_					0	0	0		L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|40|2|sense	L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|40|2|sense	L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|40|2|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	560.8294067382812	2	561.288537	1120.56252	-0.010621	-5.9613E-06	2.194	0.0012315	2.1834	0.0012255	561.2896094550975	118.74	1.1955	117.4	116.84	118.03	-1.3444					71	22	5	0	0	0	0.027462	1	11110	11110		34.173	11.13	1	59480			40782	14545	33654	33678	44123	44123					0.007061716981070276
NNQLYLKQL	9	Unmodified	_NNQLYLKQL_					0	0	0			REV__nc|ENSG00000171509|Q9HBX9-3|RXFP1	REV__nc|ENSG00000171509|Q9HBX9-3|RXFP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.28076171875	2	567.319306	1132.62406	1.9668	0.0011158	-2.3141	-0.0013128	-0.34728	-0.00019702	567.818068034221	110.99	0.17731	110.99	110.89	111.07	0					5	3	2	0	0	0	0.027462	1	12599	12599		24.203	0	1	42608	+		40783	21623	33655	33679	44124	44124					0.06305103397380662
NNQQKTRIL	9	Unmodified	_NNQQKTRIL_					0	0	0		ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	MULTI-MSMS	OvCa9_classI_Rep2	2	557.8211059570312	2	557.820004	1113.62546	0.27631	0.00015413	3.2857	0.0018328	3.562	0.001987	557.8217188413842	98.133	1.2816	97.24	96.924	98.206	-0.89305					56	25	3	0	0	0	0.55011	1	8905	8905		37.812	3.639	1	327620			40784	3295	33656	33680	44125	44125					0.07318737486116333
NNQVSAALKRL	11	Unmodified	_NNQVSAALKRL_					0	0	0		L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|35|1|sense	L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|35|1|sense	L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|35|1|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	607.3544311523438	2	607.354211	1212.69387	-0.61354	-0.00037263	0.40041	0.00024319	-0.21312	-0.00012944	607.3543577015784	45.588	1.5455	42.878	42.497	44.043	-2.7097					76	30	4	0	0	0	0.68709	1	2688	2688		12.812	6.0762	1	376690			40785	14694	33657	33681	44126	44126					0.09602982065985088
NNRCVDMQRS	10	Oxidation (M)	_NNRCVDM(Oxidation (M))QRS_		NNRCVDM(1)QRS		NNRCVDM(53)QRS	0	0	1		nc|ENSG00000214826|Q92771|DDX12P	nc|ENSG00000214826|Q92771|DDX12P	nc|ENSG00000214826|Q92771|DDX12P	MULTI-MSMS	OvCa99_classI_Rep5	1	619.7783813476562	2	619.771871	1237.52919	1.8462	0.0011442	3.1565	0.0019563	5.0027	0.0031006	619.7734931927912	136.88	0.67233	136.88	136.58	137.26	0					25	13	3	0	0	0	0.50873	1	15956	15956		53.089	7.1167	1	97765			40786	15313	33658	33682	44127	44127		376			-0.08007521407762397
NNRKIILI	8	Unmodified	_NNRKIILI_					0	0	0		tr|A0A7D6ZZY6|A0A7D6ZZY6_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_08145PE=4SV=1	tr|A0A7D6ZZY6|A0A7D6ZZY6_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_08145PE=4SV=1	tr|A0A7D6ZZY6|A0A7D6ZZY6_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_08145PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.2724914550781	2	492.321651	982.62875	-1.0885	-0.00053587	0.7361	0.0003624	-0.35237	-0.00017348	492.32174776658314	38.071	0.64286	35.361	35.173	35.816	-2.7097					23	12	3	0	0	0	0.028476	1	1810	1810		25.45	0	1	42507			40787	35979	33659	33683	44128	44128					0.136740323308004
NNRLLLTGT	9	Unmodified	_NNRLLLTGT_					0	0	0		nc|ENSG00000163104|Q9H4L7-3|SMARCAD1;ENSG00000163104|ENST00000354268|SMARCAD1;nc|ENSG00000163104|Q9H4L7-2|SMARCAD1	nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	nc|ENSG00000163104|Q9H4L7-3|SMARCAD1	MULTI-MSMS	OvCa9_classI_Rep3	3	501.29034423828125	2	501.290548	1000.56654	-1.4695	-0.00073667	1.3149	0.00065914	-0.15466	-7.7529E-05	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.62352	1	11072	11072		29.15	0	1	97838			40788	6266	33660	33684	44129	44129					0.06628261191815454
NNRRLLGGTG	10	Unmodified	_NNRRLLGGTG_					0	0	0			REV__ENST00000599560.5_1_19:50432924-50433017:-|nuORF	REV__ENST00000599560.5_1_19:50432924-50433017:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.3091430664062	2	529.296696	1056.57884	-1.0312	-0.00054581	1.8265	0.00096676	0.7953	0.00042095	529.2970923888245	96.137	0.8603	94.308	94.123	94.984	-1.8286					27	16	2	0	0	0	0.026826	1	6326	6326		29.17	5.6474	1	57175	+		40789	28021	33661	33685	44130	44130					0.052812976548466395
NNRVEMAIFF	10	Unmodified	_NNRVEMAIFF_					0	0	0		ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	ENSG00000081248|ENST00000362061|CACNA1S	MULTI-MSMS	OvCa99_classI_Rep5	1	414.5480041503906	3	414.209619	1239.60703	0.28415	0.0001177	-0.22358	-9.2608E-05	0.060574	2.509E-05	414.2094540183585	49.088	5.926	49.088	48.204	54.13	0					277	137	3	0	0	0	0.62712	1	3654	3654		38.754	0	1	1950600			40790	1658	33662	33686	44131	44131					-0.003191404800872988
NNSDPESTF	9	Unmodified	_NNSDPESTF_					0	0	0		nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.3248291015625	2	505.706711	1009.39887	-1.1924	-0.00060299	1.3087	0.00066184	0.11637	5.8847E-05	505.70727943176263	106.43	0.51453	104.41	104.31	104.82	-2.0161					11	9	2	0	0	0	0.027462	1	9681	9681		27.882	3.6795	1	10118			40791	5408	33663	33687	44132	44132					-0.10545470863473838
NNSHLIAET	9	Unmodified	_NNSHLIAET_					0	0	0			REV__ENSG00000120942|ENST00000376810|UBIAD1	REV__ENSG00000120942|ENST00000376810|UBIAD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.2872619628906	2	499.748713	997.482873	-0.35372	-0.00017677	0.41089	0.00020534	0.057173	2.8572E-05	499.7487864811223	41.123	0.53693	41.123	40.926	41.462	0					22	11	3	0	0	0	0.027462	1	2586	2586		29.15	3.6994	1	339670	+		40792	18523	33664	33688	44133	44133					-0.015968949759212592
NNSINNLHGR	10	Unmodified	_NNSINNLHGR_					0	0	0			REV__ACO2|p.D611N|1|0.3|ENSG00000100412|chr22:41526331-41526331|G/A|missense_variant	REV__ACO2|p.D611N|1|0.3|ENSG00000100412|chr22:41526331-41526331|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	569.7860107421875	2	569.789235	1137.56392	-0.9559	-0.00054466	2.0019	0.0011406	1.0459	0.00059597	569.7902502017694	146.03	1.5267	144.59	144.15	145.67	-1.4357					62	26	4	0	0	0	0.55109	1	14324	14324		47.96	0.30219	1	170700	+		40793	15556	33665	33689	44134	44134					0.0006380578684002103
NNSIRQLFL	9	Unmodified	_NNSIRQLFL_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MSMS	OvCa9_classI_Rep2	2	552.8107299804688	2	552.811648	1103.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.25	1	104.81	104.31	105.31	-0.43642								0	0	0	0.025443	1	9768	9768		124.08	35.437	1				40794	5360	33666	33690	44135	44135					0.06108236600175587
NNSIRQLFL	9	Unmodified	_NNSIRQLFL_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MSMS	OvCa9_classI_Rep2	2	552.8108520507812	2	552.811648	1103.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.3	1	104.86	104.36	105.36	-0.43642								0	0	0	0.022462	1	9774	9774		95.815	29.386	1				40795	5360	33666	33690	44136	44136					0.06108236600175587
NNSIRQLFL	9	Unmodified	_NNSIRQLFL_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MSMS	OvCa9_classI_Rep2	2	552.8109741210938	2	552.811648	1103.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.35	1	104.91	104.41	105.41	-0.43642								0	0	0	0.076951	1	9780	9780		74.255	12.148	1				40796	5360	33666	33690	44137	44137					0.06108236600175587
NNSIRQLFL	9	Unmodified	_NNSIRQLFL_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MULTI-MSMS	OvCa9_classI_Rep3	3	552.810791015625	2	552.811648	1103.60874	-0.0072824	-4.0258E-06	2.3048	0.0012741	2.2975	0.0012701	553.3148567965976	106.45	1.7704	105.18	104.64	106.41	-1.267					129	34	6	0	0	0	0.049969	5	7490	7477;7483;7490;7496;7513		118.74	41.969	1	550940			40797	5360	33666	33690	44138;44139;44140;44141;44142	44140					0.06108236600175587
NNSIRQLFL	9	Unmodified	_NNSIRQLFL_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;ENST00000467709.6_1_8:25191660-25227073:+|nuORF	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.8114624023438	2	552.811648	1103.60874	-1.3333	-0.00073704	3.8339	0.0021194	2.5006	0.0013824	553.3156163437349	107.05	1.8169	105.17	104.7	106.51	-1.8784					99	35	5	0	0	0	0.2077	2	9749	9736;9749		75.043	19.539	1	692870			40798	5360	33666	33690	44143;44144	44144					0.06108236600175587
NNSKQLVSP	9	Unmodified	_NNSKQLVSP_					0	0	0		nc|ENSG00000122420|P43088-6|PTGFR;nc|ENSG00000122420|P43088-7|PTGFR;nc|ENSG00000122420|P43088-3|PTGFR;nc|ENSG00000122420|P43088-4|PTGFR;nc|ENSG00000122420|P43088-5|PTGFR;nc|ENSG00000122420|P43088-2|PTGFR;ENSG00000122420|ENST00000370757|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	nc|ENSG00000122420|P43088-6|PTGFR	MULTI-MSMS	OvCa9_classI_Rep2	2	493.7659912109375	2	493.766906	985.519259	0.035446	1.7502E-05	-0.50839	-0.00025103	-0.47295	-0.00023353	493.76662126445797	67.226	1.1895	64.565	63.95	65.139	-2.661					65	23	4	0	0	0	0.28934	1	5241	5241		64.207	7.4862	1	1407400			40799	3530	33667	33691	44145	44145					0.02591981920818398
NNSLDVLQL	9	Unmodified	_NNSLDVLQL_					0	0	0			REV__ENSG00000187122|ENST00000266058|SLIT1	REV__ENSG00000187122|ENST00000266058|SLIT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.8199462890625	2	508.274564	1014.53457	1.3436	0.00068294	0.82234	0.00041798	2.166	0.0011009	508.27476859150255	83.539	1.0624	83.539	82.694	83.757	0					34	24	3	0	0	0	0.027462	1	8600	8600		47.657	0	1	241140	+		40800	22632	33668	33692	44146	44146					0.027888487180121047
NNSLGLLIFV	10	Unmodified	_NNSLGLLIFV_					0	0	0			REV__ENSG00000198678|ENST00000328207|OR5BS1P	REV__ENSG00000198678|ENST00000328207|OR5BS1P	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.31591796875	2	545.318774	1088.623	-0.51372	-0.00028014	-3.2363	-0.0017648	-3.75	-0.002045	545.3169196404446	142.63	4.7541	141.19	139.73	144.49	-1.4427					172	91	2	0	0	0	0.71192	1	14100	14100		29.15	3.5755	1	155190	+		40801	23042	33669	33693	44147	44147					0.08222889028479585
NNSMLAPSL	9	Unmodified	_NNSMLAPSL_					0	0	0			REV__nc|ENSG00000028277|P09086-5|POU2F2	REV__nc|ENSG00000028277|P09086-5|POU2F2	MULTI-SECPEP	OvCa9_classI_Rep2	2	473.7637634277344	2	473.73676	945.458967	-1.018	-0.00048225	-2.2568	-0.0010691	-3.2748	-0.0015514	473.7355081561986	55.82	0.69277	53.016	52.731	53.424	-2.804					22	13	2	0	0	0	0.027433	1	3925	3925		54.776	0	1	22700	+		40802	16577	33670	33694	44148	44148					-0.015944517339335107
NNSMLAPSL	9	Unmodified	_NNSMLAPSL_					0	0	0			REV__nc|ENSG00000028277|P09086-5|POU2F2	REV__nc|ENSG00000028277|P09086-5|POU2F2	MULTI-MATCH	OvCa99_classI_Rep5	1		2	473.73676	945.458967	0.31754	0.00015043	-5.0386	-0.002387	-4.721	-0.0022365	473.7342122236865	52.693	0.30587	52.693	52.522	52.828	0	-0.24442	-0.0020834	NaN	54.776	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105860	+		40803	16577	33670	33694							-0.015944517339335107
NNSNKIPEKNL	11	Unmodified	_NNSNKIPEKNL_					0	0	0		tr|A0A7D6VU64|A0A7D6VU64_9CLOTCobW/HypB/UreGnucleotide-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00715PE=4SV=1	tr|A0A7D6VU64|A0A7D6VU64_9CLOTCobW/HypB/UreGnucleotide-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00715PE=4SV=1	tr|A0A7D6VU64|A0A7D6VU64_9CLOTCobW/HypB/UreGnucleotide-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00715PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	423.2585144042969	3	424.229848	1269.66771	-0.27451	-0.00011646	1.2128	0.00051449	0.93825	0.00039803	424.231006380974	39.354	0.39547	39.354	39.151	39.547	0					13	8	3	0	0	0	0.02539	1	2321	2321		37.6	29.92	1	84099			40804	35169	33671	33695	44149	44149					0.04366668103853044
NNSQLRLL	8	Unmodified	_NNSQLRLL_					0	0	0		ENST00000446284.5_3_9:115965254-115968823:-|nuORF	ENST00000446284.5_3_9:115965254-115968823:-|nuORF	ENST00000446284.5_3_9:115965254-115968823:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.28009033203125	2	479.277441	956.540328	1.2379	0.0005933	2.8882	0.0013843	4.1261	0.0019776	479.2787787537371	96.937	2.2657	94.512	93.76	96.025	-2.4256					110	44	4	0	0	0	0.36941	2	8589	8576;8589		94.006	8.6469	1	2968100			40805	11990	33672	33696	44150;44151	44151					0.06031992020314192
NNSRQHIK	8	Unmodified	_NNSRQHIK_					0	0	0			REV__tr|A0A7D6ZFU8|A0A7D6ZFU8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16545PE=4SV=1	REV__tr|A0A7D6ZFU8|A0A7D6ZFU8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16545PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.77099609375	2	498.770314	995.526075	-0.57303	-0.00028581	2.0336	0.0010143	1.4606	0.00072848	498.77120513452377	136.26	1.1223	136.03	135.72	136.84	-0.22696					46	22	3	0	0	0	0.74229	1	13591	13591		30.504	4.9296	1	27028	+		40806	31982	33673	33697	44152	44152					0.028133395920463045
NNSRVPKKL	9	Unmodified	_NNSRVPKKL_					0	0	0		ENST00000441488.6_1_11:67925157-67938746:-|nuORF;ENSG00000110066|ENST00000304363|KMT5B	ENST00000441488.6_1_11:67925157-67938746:-|nuORF	ENST00000441488.6_1_11:67925157-67938746:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.273193359375	2	528.31964	1054.62473	-0.63886	-0.00033752	1.6643	0.00087926	1.0254	0.00054174	528.3203147068085	53.75	0.86681	53.75	53.305	54.172	0					46	20	3	0	0	0	0.027462	1	4236	4236		42.396	11.892	1	6448400			40807	2752	33674	33698	44153	44153					0.09959942837076596
NNTGIIMPK	9	Unmodified	_NNTGIIMPK_					0	0	0			REV__ENST00000522540.5_1_8:30013899-30034753:+|nuORF	REV__ENST00000522540.5_1_8:30013899-30034753:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	494.26995849609375	2	494.268227	986.521901	1.3692	0.00067677	1.8281	0.00090358	3.1973	0.0015803	494.26897651326505	133.1	1.5872	133.1	132.8	134.38	0					98	33	4	0	0	0	0.40667	1	15587	15587		51.335	0	1	1480100	+		40808	17673	33675	33699	44154	44154					0.028101140541139102
NNTNLIIIF	9	Unmodified	_NNTNLIIIF_					0	0	0			REV__tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1	REV__tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	531.3038940429688	2	531.303124	1060.5917	1.8168	0.00096527	-1.9291	-0.0010249	-0.1123	-5.9667E-05	531.302987233586	115.33	0.98135	115.33	114.93	115.91	0					34	20	3	0	0	0	0.22961	1	13169	13169		71.296	15.791	1	190410	+		40809	31524	33676	33700	44155	44155					0.06382315994369492
NNTQDTLKF	9	Unmodified	_NNTQDTLKF_					0	0	0			REV__nc|ENSG00000257335|O43451-1|MGAM	REV__nc|ENSG00000257335|O43451-1|MGAM	MULTI-MSMS	OvCa9_classI_Rep2	2	540.7691650390625	2	540.769645	1079.52474	0.31867	0.00017233	-0.40491	-0.00021897	-0.086244	-4.6638E-05	540.7692673608939	41.714	1.1834	39.004	38.783	39.966	-2.7097					50	23	3	0	0	0	0.50149	1	2208	2208		42.396	4.5846	1	202570	+		40810	23546	33677	33701	44156	44156					-0.011843392873743142
NNVDSILIV	9	Unmodified	_NNVDSILIV_					0	0	0		tr|A0A553SJM0|A0A553SJM0_NIACIGlycosyltransferasefamily39proteinOS=NialliacirculansOX=1397GN=CEQ21_17055PE=4SV=1	tr|A0A553SJM0|A0A553SJM0_NIACIGlycosyltransferasefamily39proteinOS=NialliacirculansOX=1397GN=CEQ21_17055PE=4SV=1	tr|A0A553SJM0|A0A553SJM0_NIACIGlycosyltransferasefamily39proteinOS=NialliacirculansOX=1397GN=CEQ21_17055PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.32464599609375	2	493.779482	985.544411	-0.5936	-0.00029311	0.94896	0.00046858	0.35536	0.00017547	493.7798402247441	80.92	1.1267	78.209	77.858	78.985	-2.7106					35	22	2	0	0	0	0.027418	1	6622	6622		68.787	8.6686	1	295830			40811	33517	33678	33702	44157	44157					0.05106036723395846
NNVIQEEL	8	Unmodified	_NNVIQEEL_					0	0	0		ENST00000511274.1_1_4:73163985-73176842:-|nuORF;ENSG00000156140|ENST00000286657|ADAMTS3	ENST00000511274.1_1_4:73163985-73176842:-|nuORF	ENST00000511274.1_1_4:73163985-73176842:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.78521728515625	2	479.745639	957.476725	-2.5649	-0.0012305	3.4567	0.0016583	0.89183	0.00042785	479.747178891681	37.105	0.64052	34.395	34.287	34.928	-2.7097					19	12	2	0	0	0	0.028476	1	1633	1633		44.117	0	1	18987			40812	5821	33679	33703	44158	44158					-0.00371413207437854
NNVKMNDYV	9	Unmodified	_NNVKMNDYV_					0	0	0		ENSG00000161594|ENST00000293303|KLHL10;KLHL10|p.H373Tfs*9|1|0.07|ENSG00000161594|chr17:41845558-41845558|C/-|frameshift_variant	ENSG00000161594|ENST00000293303|KLHL10	ENSG00000161594|ENST00000293303|KLHL10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.7874755859375	2	548.758223	1095.50189	0.72436	0.0003975	-1.1347	-0.00062269	-0.41036	-0.00022519	548.7574057006944	36.325	0.25056	33.476	33.339	33.589	-2.849					9	4	3	0	0	0	0.027462	1	1246	1246		21.96	7.095	1	11042			40813	6132	33680	33704	44159	44159					-0.0420368167651759
NNVPKMLAN	9	Unmodified	_NNVPKMLAN_					0	0	0		ENSG00000221989|ENST00000408979|OR2A2	ENSG00000221989|ENST00000408979|OR2A2	ENSG00000221989|ENST00000408979|OR2A2	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.2902526855469	2	500.765852	999.51715	-0.026604	-1.3323E-05	-3.3147	-0.0016599	-3.3413	-0.0016732	500.76416498567323	79.627	0.46002	77.287	77.103	77.563	-2.3399					11	8	2	0	0	0	0.027433	1	4303	4303		42.396	8.2236	1	8853.4			40814	9243	33681	33705	44160	44160					0.017372299113503686
NNVPLQGAV	9	Unmodified	_NNVPLQGAV_					0	0	0		C9orf3-HIATL1|1|fusion;C9orf3-HIATL1|2|fusion;C9orf3-HIATL1|3|fusion;C9orf3-HIATL1|4|fusion;ENSG00000148110|ENST00000375344|MFSD14B	C9orf3-HIATL1|1|fusion	C9orf3-HIATL1|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	455.76556396484375	2	456.250892	910.48723	-0.080032	-3.6514E-05	0.14929	6.8113E-05	0.069256	3.1598E-05	456.2506352810495	53.004	0.6062	53.004	52.741	53.347	0					24	13	3	0	0	0	0.027462	1	4182	4182		21.96	9.753	1	230060			40815	169	33682	33706	44161	44161					0.02840614237675254
NNVQAFTQ	8	Unmodified	_NNVQAFTQ_					0	0	0			REV__ENSG00000116668|ENST00000367500|SWT1	REV__ENSG00000116668|ENST00000367500|SWT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	460.7818298339844	2	461.224874	920.435195	-0.21797	-0.00010053	0.10428	4.8096E-05	-0.11369	-5.2436E-05	461.22474781491087	43.165	0.72404	43.165	42.97	43.694	0					22	16	2	0	0	0	0.028476	1	2849	2849		27.882	0	1	227830	+		40816	18309	33683	33707	44162	44162					-0.028205491761013946
NNVQRLKQML	10	Unmodified	_NNVQRLKQML_					0	0	0		nc|ENSG00000078674|Q15154-4|PCM1;nc|ENSG00000078674|Q15154-2|PCM1;nc|ENSG00000078674|Q15154-5|PCM1;ENSG00000078674|ENST00000325083|PCM1	nc|ENSG00000078674|Q15154-4|PCM1	nc|ENSG00000078674|Q15154-4|PCM1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	623.334716796875	2	622.350614	1242.68668	-2.97	-0.0018484	-0.92373	-0.00057488	-3.8937	-0.0024233	622.8511248974698	150.56	1.3509	149.12	148.58	149.93	-1.4344					43	30	2	0	0	0	0.026994	1	14907	14907		40.778	0	1	17342			40817	1597	33684	33708	44163	44163					0.07503926193908228
NNVSDDVLE	9	Unmodified	_NNVSDDVLE_					0	0	0			REV__ENSG00000120265|ENST00000464889|PCMT1	REV__ENSG00000120265|ENST00000464889|PCMT1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.2825622558594	2	502.730186	1003.44582	-0.08445	-4.2455E-05	-0.33852	-0.00017018	-0.42297	-0.00021264	502.72951968046453	113.2	0.54427	111.75	111.56	112.1	-1.4461					16	10	2	0	0	0	0.027455	1	10488	10488		42.396	5.9494	1	11895	+		40818	18492	33685	33709	44164	44164					-0.055766113123354444
NNVSHLPKLSV	11	Unmodified	_NNVSHLPKLSV_					0	0	0			REV__C16orf57-MAPKAPK5|1|fusion;REV__nc|ENSG00000089022|Q8IW41|MAPKAPK5	REV__C16orf57-MAPKAPK5|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	605.281494140625	2	604.343312	1206.67207	1.2866	0.00077756	-2.3336	-0.0014103	-1.047	-0.00063276	604.8428094307699	155.89	0.45741	155.89	155.73	156.19	0					11	8	2	0	0	0	0.025955	1	18275	18275		24.232	8.59	1	17965	+		40819	15717;17193	33686	33710	44165	44165					0.07700177317406087
NNVSVSFEGPS	11	Unmodified	_NNVSVSFEGPS_					0	0	0			REV__ENSG00000189152|ENST00000344415|GRAPL	REV__ENSG00000189152|ENST00000344415|GRAPL	MULTI-SECPEP	OvCa9_classI_Rep3	3	568.8464965820312	2	568.76456	1135.51457	1.1325	0.00064413	-1.4762	-0.0008396	-0.34368	-0.00019547	568.7637321250361	122.48	0.89268	121.45	121.27	122.16	-1.0286					26	16	2	0	0	0	0.025466	1	9484	9484		40.058	0	1	43029	+		40820	22765	33687	33711	44166	44166					-0.0477694701260134
NNVTGLQSTV	10	Unmodified	_NNVTGLQSTV_					0	0	0			REV__PRKAB1|p.N216Mfs*17|1|0.33|ENSG00000111725|chr12:119676648-119676649|-/TATGTGGTACATTAGCACCTTGTCA|frameshift_variant	REV__PRKAB1|p.N216Mfs*17|1|0.33|ENSG00000111725|chr12:119676648-119676649|-/TATGTGGTACATTAGCACCTTGTCA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.286865234375	2	516.769645	1031.52474	-1.3543	-0.00069986	-0.56794	-0.00029349	-1.9222	-0.00099335	517.2702036573717	70.173	0.76278	70.173	69.84	70.603	0					46	18	6	0	0	0	0.026494	1	6752	6752		67.494	0	1	2942100	+		40821	18052	33688	33712	44167	44167					0.010236607125989394
NNWAEKQGIK	10	Unmodified	_NNWAEKQGIK_					0	0	0		tr|A0A7D7A3U6|A0A7D7A3U6_9CLOTAmidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22955PE=4SV=1	tr|A0A7D7A3U6|A0A7D7A3U6_9CLOTAmidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22955PE=4SV=1	tr|A0A7D7A3U6|A0A7D7A3U6_9CLOTAmidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22955PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	594.3165893554688	2	594.312012	1186.60947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.775	1	82.775	82.275	83.275	0								0	0	0	0.13951	1	8585	8585		52.937	1.6012	1				40822	36129	33689	33713	44168	44168					0.023630312492286976
NNWDRERVALV	11	Unmodified	_NNWDRERVALV_					0	0	0			REV__tr|A0A553SLJ6|A0A553SLJ6_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20775PE=4SV=1	REV__tr|A0A553SLJ6|A0A553SLJ6_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20775PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.26165771484375	3	457.909109	1370.7055	-0.31661	-0.00014498	-0.26106	-0.00011954	-0.57768	-0.00026452	457.9085344418023	55.595	0.90564	55.595	55.315	56.22	0					31	21	2	0	0	0	0.025568	1	4586	4586		33.039	0	1	400770	+		40823	30230	33690	33714	44169	44169					0.034971790893450816
NNWVVIVKHL	10	Unmodified	_NNWVVIVKHL_					0	0	0			REV__ENSG00000162694|ENST00000370114|EXTL2	REV__ENSG00000162694|ENST00000370114|EXTL2	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3560791015625	2	611.358765	1220.70298	-3.1571	-0.0019301	-1.2176	-0.00074436	-4.3747	-0.0026745	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.65434	1	12792	12792		35.618	6.4687	1	666990	+		40824	20766	33691	33715	44170	44170					0.10145375422325742
NNYHLCNEI	9	Unmodified	_NNYHLCNEI_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	560.80322265625	2	560.248023	1118.48149	3.4349	0.0019244	-0.63183	-0.00035398	2.8031	0.0015704	560.2471588976051	130.21	0.64366	128.73	128.51	129.16	-1.4779					15	12	2	0	0	0	0.027462	1	12532	12532		38.806	22.333	1	8640			40825	3571	33692	33716	44171	44171					-0.07300852336334174
NNYKKIVL	8	Unmodified	_NNYKKIVL_					0	0	0		nc|ENSG00000163564|Q6K0P9-6|PYHIN1;nc|ENSG00000163564|Q6K0P9-5|PYHIN1;nc|ENSG00000163564|Q6K0P9-4|PYHIN1;nc|ENSG00000163564|Q6K0P9-3|PYHIN1;nc|ENSG00000163564|Q6K0P9-2|PYHIN1;ENSG00000163564|ENST00000368140|PYHIN1	nc|ENSG00000163564|Q6K0P9-6|PYHIN1	nc|ENSG00000163564|Q6K0P9-6|PYHIN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.27911376953125	2	496.300384	990.586216	-0.15053	-7.471E-05	-0.48181	-0.00023912	-0.63234	-0.00031383	496.3000460764249	60.963	0.60244	60.963	60.73	61.332	0					25	13	3	0	0	0	0.028476	1	5340	5340		20.482	0	1	721970			40826	6328	33693	33717	44172	44172					0.0905463720255284
NPAENFRVL	9	Unmodified	_NPAENFRVL_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5-VWA3B|1|fusion	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	OvCa9_classI_Rep3	3	530.2826538085938	2	530.282723	1058.55089	-0.54716	-0.00029015	0.93254	0.00049451	0.38538	0.00020436	530.2830932900355	89.963	1.5821	87.883	87.592	89.175	-2.0805					53	30	3	0	0	0	0.029147	3	5570	5558;5563;5570		136.27	64.391	1	468570			40827	1607	33694	33718	44173;44174;44175	44175					0.023959746747550525
NPAENFRVL	9	Unmodified	_NPAENFRVL_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5-VWA3B|1|fusion	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.2827758789062	2	530.282723	1058.55089	-0.80847	-0.00042872	2.0732	0.0010994	1.2647	0.00067066	530.2831817728008	90.429	1.4786	87.854	87.6	89.079	-2.575					89	28	5	0	0	0	0.029147	2	7789	7789;7803		136.27	68.774	1	354510			40828	1607	33694	33718	44176;44177	44176					0.023959746747550525
NPAENFRVL	9	Unmodified	_NPAENFRVL_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5-VWA3B|1|fusion	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.282723	1058.55089	1.0304	0.0005464	-0.31996	-0.00016967	0.71044	0.00037673	530.2822683187026	89.252	1.4351	87.885	87.527	88.962	-1.3676	0.010901	-0.00095702	NaN	136.27	72	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230190			40829	1607	33694	33718							0.023959746747550525
NPAIHIGQKR	10	Unmodified	_NPAIHIGQKR_					0	0	0		ENSG00000156282|ENST00000286808|CLDN17	ENSG00000156282|ENST00000286808|CLDN17	ENSG00000156282|ENST00000286808|CLDN17	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3299560546875	2	567.330539	1132.64652	-0.48412	-0.00027465	-0.73588	-0.00041748	-1.22	-0.00069214	567.3299446868054	145.54	4.8872	144.11	142.68	147.57	-1.4357					247	95	4	0	0	0	0.78463	1	14416	14416		20.947	1.587	1	208760			40830	5832	33695	33719	44178	44178					0.0855074758567298
NPAITREIV	9	Unmodified	_NPAITREIV_					0	0	0		tr|A0A553SFY1|A0A553SFY1_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09695PE=4SV=1	tr|A0A553SFY1|A0A553SFY1_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09695PE=4SV=1	tr|A0A553SFY1|A0A553SFY1_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09695PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	506.7953186035156	2	506.792924	1011.57129	1.5068	0.00076361	4.0345	0.0020447	5.5412	0.0028083	506.79485360489565	115.23	0.60682	115.23	114.98	115.58	0					20	12	2	0	0	0	0.44568	1	13168	13168		47.657	0	1	110570			40831	33091	33696	33720	44179	44179					0.06597145334581
NPASKVIAL	9	Unmodified	_NPASKVIAL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000070371|ENST00000427926|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa9_classI_Rep2	2	456.7799072265625	2	456.779285	911.544017	1.3002	0.00059389	-2.3661	-0.0010808	-1.0659	-0.00048689	456.77839015962957	79.688	3.6708	77.992	77.4	81.071	-1.6951					147	71	5	0	0	0	0.022645	16	6688	6673;6676;6682;6688;6694;6699;6705;6711;6718;6724;6730;6737;6743;6749;6757;6763		143.89	51.696	1	2527500			40832	4906;1426	33697	33721	44180;44181;44182;44183;44184;44185;44186;44187;44188;44189;44190;44191;44192;44193;44194;44195	44183					0.08470661794183343
NPASKVIAL	9	Unmodified	_NPASKVIAL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000070371|ENST00000427926|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa9_classI_Rep3	3	456.780029296875	2	456.779285	911.544017	0.20302	9.2736E-05	-1.2977	-0.00059274	-1.0946	-0.00050001	456.77893704530135	79.972	3.6312	77.632	77.257	80.888	-2.3399					139	71	5	0	0	0	0.013607	10	4367	4341;4345;4349;4355;4361;4367;4373;4379;4387;4395		157.33	52.06	1	5179700			40833	4906;1426	33697	33721	44196;44197;44198;44199;44200;44201;44202;44203;44204;44205	44201					0.08470661794183343
NPASKVIAL	9	Unmodified	_NPASKVIAL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000070371|ENST00000427926|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.78021240234375	2	456.779285	911.544017	-0.60899	-0.00027818	-0.71358	-0.00032595	-1.3226	-0.00060413	456.7791757636075	80.545	3.3147	77.835	77.417	80.731	-2.7106					130	67	5	0	0	0	0.018335	7	6589	6567;6577;6589;6602;6614;6627;6640		148.99	56.796	1	4767400			40834	4906;1426	33697	33721	44206;44207;44208;44209;44210;44211;44212	44208					0.08470661794183343
NPCGIDSECI	10	Unmodified	_NPCGIDSECI_					0	0	0		nc|ENSG00000165671|Q96L73-2|NSD1;ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.796630859375	2	525.715167	1049.41578	-0.99705	-0.00052417	0.97307	0.00051156	-0.023982	-1.2607E-05	525.7155741386184	77.131	0.96915	74.314	74.001	74.97	-2.8165					30	19	2	0	0	0	0.027147	1	6195	6195		5.9211	0	1	70991			40835	6589	33698	33722	44213	44213					-0.10695009573510106
NPCLHGRCTE	10	Unmodified	_NPCLHGRCTE_					0	0	0		nc|ENSG00000188107|Q5T1H1|EYS;ENSG00000188107|ENST00000503581|EYS	nc|ENSG00000188107|Q5T1H1|EYS	nc|ENSG00000188107|Q5T1H1|EYS	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.85302734375	2	565.2475	1128.48045	-0.15381	-8.6941E-05	2.8926	0.0016351	2.7388	0.0015481	565.2490530353665	43.334	0.37934	43.334	43.185	43.565	0					18	8	3	0	0	0	0.026915	1	2867	2867		9.7057	0	1	250860			40836	15229	33699	33723	44214	44214					-0.0786538997685966
NPCLPSAAAV	10	Unmodified	_NPCLPSAAAV_					0	0	0		ENST00000420054.5_1_1:54651905-54661258:-|nuORF	ENST00000420054.5_1_1:54651905-54661258:-|nuORF	ENST00000420054.5_1_1:54651905-54661258:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.7566833496094	2	471.739302	941.464052	2.2117	0.0010434	1.7074	0.00080544	3.9191	0.0018488	471.74025483028214	77.403	0.41731	77.403	77.044	77.461	0					11	9	2	0	0	0	0.026782	1	7787	7787		37.812	21.338	1	240360			40837	11664	33700	33724	44215	44215					-0.009021478713179931
NPDFKSSKQLT	11	Unmodified	_NPDFKSSKQLT_					0	0	0		tr|A0A553SP16|A0A553SP16_NIACIFlagellarhook-lengthcontrolproteinFliKOS=NialliacirculansOX=1397GN=CEQ21_25480PE=4SV=1	tr|A0A553SP16|A0A553SP16_NIACIFlagellarhook-lengthcontrolproteinFliKOS=NialliacirculansOX=1397GN=CEQ21_25480PE=4SV=1	tr|A0A553SP16|A0A553SP16_NIACIFlagellarhook-lengthcontrolproteinFliKOS=NialliacirculansOX=1397GN=CEQ21_25480PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	421.22589111328125	3	422.222582	1263.64592	-0.087165	-3.6803E-05	0.51939	0.0002193	0.43223	0.0001825	422.2229612417033	67.074	1.1895	64.413	63.95	65.139	-2.661					47	23	3	0	0	0	0.02605	1	5172	5172		21.032	15.333	1	28068			40838	33993	33701	33725	44216	44216					0.024638633552967804
NPDFKSSKQLT	11	Unmodified	_NPDFKSSKQLT_					0	0	0		tr|A0A553SP16|A0A553SP16_NIACIFlagellarhook-lengthcontrolproteinFliKOS=NialliacirculansOX=1397GN=CEQ21_25480PE=4SV=1	tr|A0A553SP16|A0A553SP16_NIACIFlagellarhook-lengthcontrolproteinFliKOS=NialliacirculansOX=1397GN=CEQ21_25480PE=4SV=1	tr|A0A553SP16|A0A553SP16_NIACIFlagellarhook-lengthcontrolproteinFliKOS=NialliacirculansOX=1397GN=CEQ21_25480PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	422.222582	1263.64592	0.91598	0.00038675	-0.20527	-8.6669E-05	0.71071	0.00030008	422.5565805852381	67.97	0.68147	64.48	64.186	64.867	-3.4902	0.033263	-0.00066547	NaN	21.032	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45126			40839	33993	33701	33725							0.024638633552967804
NPDIKDGNPL	10	Unmodified	_NPDIKDGNPL_					0	0	0			REV__tr|A0A553SJC4|A0A553SJC4_NIACILPXTGcellwallanchordomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16495PE=4SV=1	REV__tr|A0A553SJC4|A0A553SJC4_NIACILPXTGcellwallanchordomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16495PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.741943359375	2	541.77747	1081.54039	0.31579	0.00017109	1.6523	0.00089519	1.9681	0.0010663	541.7777303524263	73.845	0.34238	73.845	73.678	74.02	0					13	8	2	0	0	0	0.026803	1	7272	7272		40.058	14.484	1	361580	+		40840	29993	33702	33726	44217	44217					0.0028794722966267727
NPDISLPGLV	10	Unmodified	_NPDISLPGLV_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1;REV__MACF1-CMTM4|1|fusion;REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.8087158203125	2	512.787307	1023.56006	1.2423	0.00063704	0.099017	5.0775E-05	1.3413	0.00068782	512.7873981057794	111.37	0.36172	111.37	111.2	111.56	0					11	7	2	0	0	0	0.026665	1	12662	12662		26.693	0	1	85704	+		40841	20262;18823;28637	33703	33727	44218	44218					0.0492232324043016
NPDKPLLLI	9	Unmodified	_NPDKPLLLI_					0	0	0			REV__tr|A0A7D6ZPB2|A0A7D6ZPB2_9CLOTPeptidechainreleasefactor1OS=ClostridiumintestinaleOX=36845GN=prfAPE=3SV=1	REV__tr|A0A7D6ZPB2|A0A7D6ZPB2_9CLOTPeptidechainreleasefactor1OS=ClostridiumintestinaleOX=36845GN=prfAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	511.8143005371094	2	511.815867	1021.61718	-1.0737	-0.00054956	-1.8225	-0.00093277	-2.8962	-0.0014823	511.81478887315143	50.018	2.3782	47.224	46.637	49.015	-2.794					105	47	4	0	0	0	0.56889	1	3209	3209		35.618	0	1	277830	+		40842	32132	33704	33728	44219	44219					0.10723790516829013
NPDPFVPVL	9	Unmodified	_NPDPFVPVL_					0	0	0		HEATR1|p.P2064Hfs*2|1|0.04|ENSG00000119285|chr1:236553627-236553627|G/-|frameshift_variant;ENSG00000119285|ENST00000366582|HEATR1;HEATR1|p.G1956Wfs*9|1|0.04|ENSG00000119285|chr1:236555353-236555354|-/A|frameshift_variant;ERO1LB-HEATR1|1|fusion;ERO1LB-HEATR1|2|fusion	HEATR1|p.P2064Hfs*2|1|0.04|ENSG00000119285|chr1:236553627-236553627|G/-|frameshift_variant	HEATR1|p.P2064Hfs*2|1|0.04|ENSG00000119285|chr1:236553627-236553627|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.2884826660156	2	499.271293	996.528032	-1.0079	-0.00050322	4.2157	0.0021048	3.2078	0.0016016	499.27365800393477	80.545	0.58393	77.834	77.615	78.199	-2.7106					20	11	2	0	0	0	0.02721	1	6572	6572		44.117	0	1	52825			40843	3350	33705	33729	44220	44220					0.029629555573023936
NPEALMSVVSL	11	Unmodified	_NPEALMSVVSL_					0	0	0			REV__CD55-UBE2G2|1|fusion	REV__CD55-UBE2G2|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	580.30712890625	2	580.305007	1158.59546	0.69649	0.00040418	0.11481	6.6625E-05	0.8113	0.0004708	580.3048811543723	150.62	0.64905	150.62	150.29	150.94	0					29	12	3	0	0	0	0.43993	1	17650	17650		58.23	0	1	235970	+		40844	15762	33706	33730	44221	44221					0.022506177059312904
NPEEIAHAV	9	Unmodified	_NPEEIAHAV_					0	0	0		tr|A0A553STU1|A0A553STU1_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05760PE=3SV=1	tr|A0A553STU1|A0A553STU1_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05760PE=3SV=1	tr|A0A553STU1|A0A553STU1_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05760PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.3196105957031	2	490.245806	978.47706	-0.08142	-3.9916E-05	3.4928	0.0017123	3.4114	0.0016724	490.2472977975037	46.813	1.2187	43.74	43.501	44.72	-3.0724					38	23	3	0	0	0	0.027462	1	2456	2456		30.504	10.022	1	191220			40845	34534	33707	33731	44222	44222					-0.013039934875791914
NPEEIAHAV	9	Unmodified	_NPEEIAHAV_					0	0	0		tr|A0A553STU1|A0A553STU1_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05760PE=3SV=1	tr|A0A553STU1|A0A553STU1_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05760PE=3SV=1	tr|A0A553STU1|A0A553STU1_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05760PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	490.245806	978.47706	0.035147	1.723E-05	3.1675	0.0015529	3.2027	0.0015701	490.24711004097776	46.678	0.5959	43.968	43.745	44.341	-2.7097	0.11387	-0.00019631	NaN	30.504	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35942			40846	34534	33707	33731							-0.013039934875791914
NPEKRYNVL	9	Unmodified	_NPEKRYNVL_					0	0	0		ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	ENSG00000214753|ENST00000301785|HNRNPUL2	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.8104248046875	2	566.809105	1131.60366	-0.22392	-0.00012692	-0.003998	-2.2661E-06	-0.22792	-0.00012919	566.8090561851628	55.123	1.2241	51.875	51.491	52.715	-3.2474					83	23	5	0	0	0	0.18193	2	3448	3448;3484		79.451	10.37	1	2010200			40847	9181	33708	33732	44223;44224	44223					0.04311932737573443
NPELHAIPFI	10	Unmodified	_NPELHAIPFI_					0	0	0		tr|A0A7D6VS35|A0A7D6VS35_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03420PE=4SV=1	tr|A0A7D6VS35|A0A7D6VS35_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03420PE=4SV=1	tr|A0A7D6VS35|A0A7D6VS35_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03420PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	575.81689453125	2	575.816399	1149.61824	1.6009	0.00092181	1.0462	0.00060244	2.6471	0.0015242	575.8170124478966	112.58	1.2482	112.58	112.25	113.5	0					85	28	5	0	0	0	0.48198	1	12878	12878		56.721	7.2795	1	4222100			40848	34982	33709	33733	44225	44225					0.04942004885697315
NPFFYRKL	8	Unmodified	_NPFFYRKL_					0	0	0			REV__ENST00000340855.10_2_X:148561276-148561471:-|nuORF	REV__ENST00000340855.10_2_X:148561276-148561471:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	542.796142578125	2	542.800552	1083.58655	-2.2011	-0.0011947	-3.8728	-0.0021022	-6.0739	-0.0032969	542.7983627511975	142.92	1.1361	142.69	142.21	143.35	-0.22697					52	22	3	0	0	0	0.73938	1	14381	14381		31.955	1.4512	1	87156	+		40849	24627	33710	33734	44226	44226					0.048100569224061474
NPGPQGSFLTH	11	Unmodified	_NPGPQGSFLTH_					0	0	0			REV__ZAN|p.S2325Lfs*5|1|0.06|ENSG00000146839|chr7:100786133-100786134|-/G|frameshift_variant	REV__ZAN|p.S2325Lfs*5|1|0.06|ENSG00000146839|chr7:100786133-100786134|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	577.8294677734375	2	577.783087	1153.55162	-1.6413	-0.00094834	2.7406	0.0015835	1.0992	0.00063512	577.7845765283915	55.111	0.40016	52.297	52.022	52.422	-2.8139					12	7	2	0	0	0	0.026089	1	3787	3787		29.17	9.1733	1	72087	+		40850	20030	33711	33735	44227	44227					-0.019012306761851505
NPGSIKKR	8	Unmodified	_NPGSIKKR_					0	0	0			REV__ENSG00000147679|ENST00000309822|UTP23	REV__ENSG00000147679|ENST00000309822|UTP23	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.2337646484375	2	450.274701	898.534849	-0.47462	-0.00021371	-0.10271	-4.6246E-05	-0.57732	-0.00025995	450.2745333302333	44.477	0.66116	41.439	41.258	41.919	-3.0385					20	12	2	0	0	0	0.028476	1	2194	2194		17.365	0	1	74587	+		40851	20080	33712	33736	44228	44228					0.08152313228515595
NPGVARGHR	9	Unmodified	_NPGVARGHR_					0	0	0		ENSG00000189377|ENST00000601181|CXCL17	ENSG00000189377|ENST00000601181|CXCL17	ENSG00000189377|ENST00000601181|CXCL17	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.8009033203125	2	482.265199	962.515845	-0.26	-0.00012539	2.8775	0.0013877	2.6175	0.0012624	482.2663959378785	70.454	0.70781	70.454	70.246	70.954	0					22	17	2	0	0	0	0.027462	1	6788	6788		45.952	30.31	1	543790			40852	8554	33713	33737	44229	44229					0.033087766574681154
NPGVKKENMQV	11	Unmodified	_NPGVKKENMQV_					0	0	0		ENST00000454244.4_1_3:8543555-8578921:+|nuORF	ENST00000454244.4_1_3:8543555-8578921:+|nuORF	ENST00000454244.4_1_3:8543555-8578921:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	621.8513793945312	2	622.326805	1242.63906	1.2069	0.00075107	3.1443	0.0019568	4.3512	0.0027078	622.3264032465089	71.653	0.64403	69.051	68.732	69.376	-2.6023					17	12	2	0	0	0	0.025344	1	3357	3357		33.922	3.6039	1	12893			40853	12085	33714	33738	44230	44230					0.027442272030612003
NPGVLITL	8	Unmodified	_NPGVLITL_					0	0	0			REV__nc|ENSG00000113522|Q92878-2|RAD50	REV__nc|ENSG00000113522|Q92878-2|RAD50	MULTI-SECPEP	OvCa9_classI_Rep4_	4	412.7714538574219	2	413.755278	825.496004	0.10082	4.1715E-05	0.50167	0.00020757	0.60249	0.00024928	413.7555417752416	94.553	0.69949	92.084	91.811	92.511	-2.4685					18	13	2	0	0	0	0.028476	1	8256	8256		42.474	1.9018	1	18694	+		40854	18153	33715	33739	44231	44231					0.07627587874151232
NPGVLITL	8	Unmodified	_NPGVLITL_					0	0	0			REV__nc|ENSG00000113522|Q92878-2|RAD50	REV__nc|ENSG00000113522|Q92878-2|RAD50	MULTI-MATCH	OvCa9_classI_Rep3	3		2	413.755278	825.496004	-0.16728	-6.9212E-05	0.94005	0.00038895	0.77278	0.00031974	413.75566639847676	93.854	0.66448	91.892	91.627	92.292	-1.9617	-0.09595	0.00013421	NaN	33.516	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21635	+		40855	18153	33715	33739							0.07627587874151232
NPHLVNSEKPR	11	Unmodified	_NPHLVNSEKPR_					0	0	0			REV__nc|ENSG00000091656|Q86UP3|ZFHX4	REV__nc|ENSG00000091656|Q86UP3|ZFHX4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	430.7590026855469	3	430.901954	1289.68403	-0.07101	-3.0598E-05	-0.96887	-0.00041749	-1.0399	-0.00044809	430.90137907473826	71.502	0.68382	68.045	67.825	68.509	-3.4563					26	13	3	0	0	0	0.025988	1	5491	5491		20.315	0	1	45443	+		40856	17254	33716	33740	44232	44232					0.050777940605939875
NPHPCLWV	8	Unmodified	_NPHPCLWV_					0	0	0			REV__chr3:108125142-108135144|246|12.49|0.53|4.55|+|2|TE_info:THE1C,THE1C_dup1863,ERVL-MaLR,LTR,donor,+,108124859,108125142|None,LINC01215|1	REV__chr3:108125142-108135144|246|12.49|0.53|4.55|+|2|TE_info:THE1C,THE1C_dup1863,ERVL-MaLR,LTR,donor,+,108124859,108125142|None,LINC01215|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	482.3208923339844	2	483.23673	964.458907	0.42239	0.00020412	1.2167	0.00058795	1.6391	0.00079207	483.23727132459896	112.47	0.39481	112.35	112.08	112.48	-0.12174					10	7	2	0	0	0	0.028476	1	10636	10636		49.211	17.681	1	11897	+		40857	16035	33717	33741	44233	44233					-0.024744069432586002
NPIFGRKEL	9	Unmodified	_NPIFGRKEL_					0	0	0		ENSG00000077274|ENST00000324068|CAPN6	ENSG00000077274|ENST00000324068|CAPN6	ENSG00000077274|ENST00000324068|CAPN6	MULTI-MSMS	OvCa9_classI_Rep2	2	537.3065795898438	2	537.308741	1072.60293	-1.8394	-0.00098831	1.6403	0.00088134	-0.19909	-0.00010697	537.3095446189913	68.459	1.3908	65.839	65.474	66.865	-2.6203					69	27	4	0	0	0	0.10502	3	5389	5389;5394;5406		95.815	34.361	1	481520			40858	1568	33718	33742	44234;44235;44236	44234					0.06953138088510968
NPIFGRKEL	9	Unmodified	_NPIFGRKEL_					0	0	0		ENSG00000077274|ENST00000324068|CAPN6	ENSG00000077274|ENST00000324068|CAPN6	ENSG00000077274|ENST00000324068|CAPN6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	537.308741	1072.60293	1.8665	0.0010029	-2.0766	-0.0011158	-0.21014	-0.00011291	537.3078627017023	68.637	0.55077	65.823	65.611	66.162	-2.8144	-0.054135	-0.0033322	NaN	95.815	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30399			40859	1568	33718	33742							0.06953138088510968
NPIFGRKEL	9	Unmodified	_NPIFGRKEL_					0	0	0		ENSG00000077274|ENST00000324068|CAPN6	ENSG00000077274|ENST00000324068|CAPN6	ENSG00000077274|ENST00000324068|CAPN6	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	537.308741	1072.60293	-1.5343	-0.00082441	0.85251	0.00045806	-0.68183	-0.00036635	537.309097389361	69.45	1.3691	65.969	65.663	67.032	-3.4812	0.092321	-0.00018446	NaN	95.815	60	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	576010			40860	1568	33718	33742							0.06953138088510968
NPIIKNLKE	9	Unmodified	_NPIIKNLKE_					0	0	0		L1M4_dup669|chr1:145841513-145841995:-|1.3321024439662876|0.3377737044666122|1.98|429.0|11|2|sense	L1M4_dup669|chr1:145841513-145841995:-|1.3321024439662876|0.3377737044666122|1.98|429.0|11|2|sense	L1M4_dup669|chr1:145841513-145841995:-|1.3321024439662876|0.3377737044666122|1.98|429.0|11|2|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.2478637695312	2	534.824224	1067.63389	-0.65124	-0.0003483	1.9009	0.0010167	1.2497	0.00066836	534.8243795156554	112.06	0.67876	110.55	110.37	111.05	-1.5111					17	12	2	0	0	0	0.027453	1	10368	10368		45.972	0	1	25450			40861	14554	33719	33743	44237	44237					0.10278291402732975
NPIIRDLAR	9	Unmodified	_NPIIRDLAR_					0	0	0			REV__tr|A0A553SHC2|A0A553SHC2_NIACIDNA-directedRNApolymerasesubunitbetaOS=NialliacirculansOX=1397GN=rpoBPE=3SV=1	REV__tr|A0A553SHC2|A0A553SHC2_NIACIDNA-directedRNApolymerasesubunitbetaOS=NialliacirculansOX=1397GN=rpoBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	534.320068359375	2	534.31964	1066.62473	-2.0296	-0.0010845	1.4628	0.00078158	-0.56686	-0.00030289	534.3203965830495	54.412	1.8937	51.599	51.025	52.918	-2.8139					100	37	4	0	0	0	0.37135	1	3781	3781		54.776	15.523	1	1202800	+		40862	29789	33720	33744	44238	44238					0.09407942837083283
NPILAVRRS	9	Unmodified	_NPILAVRRS_					0	0	0			REV__ENST00000508420.1_1_5:114961613-114968567:-|nuORF	REV__ENST00000508420.1_1_5:114961613-114968567:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.3018798828125	2	513.314358	1024.61416	-0.70794	-0.00036339	2.0875	0.0010715	1.3796	0.00070815	513.3154942811716	104	0.21035	101.88	101.69	101.9	-2.1192					5	3	2	0	0	0	0.027462	1	9393	9393		23.042	0	1	7792.8	+		40863	26913	33721	33745	44239	44239					0.10283960182664487
NPILLRPL	8	Unmodified	_NPILLRPL_					0	0	0			REV__ENSG00000235863|ENST00000451237|B3GALT4	REV__ENSG00000235863|ENST00000451237|B3GALT4	MULTI-MSMS	OvCa9_classI_Rep3	3	468.3050537109375	2	468.30547	934.596387	-0.11211	-5.25E-05	-0.42977	-0.00020127	-0.54188	-0.00025376	468.30521098510104	102.7	2.1959	101.18	100.63	102.83	-1.5211					138	41	5	0	0	0	0.59148	2	7099	7099;7106		65.803	17.888	1	1655400	+		40864	23407	33722	33746	44240;44241	44240					0.12647244927802603
NPILLVKNTSL	11	Unmodified	_NPILLVKNTSL_					0	0	0		ENSG00000173464|ENST00000553849|RNASE11	ENSG00000173464|ENST00000553849|RNASE11	ENSG00000173464|ENST00000553849|RNASE11	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.369873046875	2	606.371538	1210.72852	-2.0217	-0.0012259	-1.2081	-0.00073258	-3.2298	-0.0019585	606.3706888805716	149.57	2.6994	148.14	147.52	150.22	-1.4344					165	58	4	0	0	0	0.71191	1	14773	14773		25.574	1.0549	1	304910			40865	7380	33723	33747	44242	44242					0.13158805154080255
NPIRVKEV	8	Unmodified	_NPIRVKEV_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.7787170410156	2	477.790184	953.565815	-0.80906	-0.00038656	1.3637	0.00065157	0.55466	0.00026501	477.79087714574956	44.477	0.15388	41.439	41.31	41.464	-3.0385					4	2	2	0	0	0	0.028476	1	2197	2197		37.159	0	1	7120.6			40866	4566	33724	33748	44243	44243					0.08717466542759666
NPISMIRVEP	10	Unmodified	_NPISMIRVEP_					0	0	0			REV__nc|ENSG00000132912|Q9UJW0-2|DCTN4	REV__nc|ENSG00000132912|Q9UJW0-2|DCTN4	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.309814453125	2	578.313166	1154.61178	-2.9942	-0.0017316	-2.063	-0.0011931	-5.0572	-0.0029246	578.3118346791387	149.42	1.2353	147.99	147.64	148.88	-1.4344					62	24	3	0	0	0	0.71173	1	14720	14720		29.17	1.0886	1	130810	+		40867	19114	33725	33749	44244	44244					0.04065743662704335
NPITMFPLKE	10	Unmodified	_NPITMFPLKE_					0	0	0			REV__tr|A0A553SKB2|A0A553SKB2_NIACIprephenatedehydrataseOS=NialliacirculansOX=1397GN=pheAPE=4SV=1	REV__tr|A0A553SKB2|A0A553SKB2_NIACIprephenatedehydrataseOS=NialliacirculansOX=1397GN=pheAPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	594.8530883789062	2	595.317917	1188.62128	-0.21551	-0.0001283	-1.5306	-0.00091119	-1.7461	-0.0010395	595.8183046088012	77.745	1.2078	75.393	74.89	76.098	-2.3527					40	23	2	0	0	0	0.026782	1	4109	4109		37.812	0	1	36174	+		40868	30102	33726	33750	44245	44245					0.03451511948219377
NPKAFFSVL	9	Unmodified	_NPKAFFSVL_					0	0	0		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	MULTI-MSMS	OvCa9_classI_Rep2	2	511.7866516113281	2	511.78711	1021.55967	-0.34876	-0.00017849	0.34291	0.0001755	-0.0058435	-2.9906E-06	511.7870588089586	114.99	2.1752	114.87	114.5	116.68	-0.11777					99	43	4	0	0	0	0.22961	1	10953	10953		71.296	2.5089	1	358000			40869	4049	33727	33751	44246	44246					0.0497494831122367
NPKAFFSVL	9	Unmodified	_NPKAFFSVL_					0	0	0		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	MULTI-MSMS	OvCa9_classI_Rep3	3	511.7860412597656	2	511.78711	1021.55967	-0.47019	-0.00024064	0.19029	9.7388E-05	-0.2799	-0.00014325	511.7870120852246	115.96	2.5713	114.92	114.55	117.12	-1.0414					116	51	4	0	0	0	0.13482	3	8632	8632;8639;8652		87.754	31.033	1	393220			40870	4049	33727	33751	44247;44248;44249	44247					0.0497494831122367
NPKAFFSVL	9	Unmodified	_NPKAFFSVL_					0	0	0		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.78656005859375	2	511.78711	1021.55967	-0.17744	-9.0812E-05	-0.89443	-0.00045776	-1.0719	-0.00054857	511.78652454264744	116.29	2.3272	114.93	114.6	116.92	-1.3645					95	44	4	0	0	0	0.16524	2	10850	10850;10862		82.305	12.148	1	363420			40871	4049	33727	33751	44250;44251	44250					0.0497494831122367
NPKIDSFSE	9	Unmodified	_NPKIDSFSE_					0	0	0		nc|ENSG00000005471|P21439-3|ABCB4;ENSG00000005471|ENST00000649586|ABCB4;nc|ENSG00000005471|P21439|ABCB4	nc|ENSG00000005471|P21439-3|ABCB4	nc|ENSG00000005471|P21439-3|ABCB4	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.750732421875	2	518.750921	1035.48729	-1.1686	-0.00060624	-2.5106	-0.0013024	-3.6793	-0.0019086	518.7496298689623	48.53	1.8667	45.423	45.09	46.956	-3.1077					87	35	5	0	0	0	0.40667	1	2697	2697		51.335	5.3835	1	762330			40872	855	33728	33752	44252	44252					-0.029034305529876292
NPKIDSFSE	9	Unmodified	_NPKIDSFSE_					0	0	0		nc|ENSG00000005471|P21439-3|ABCB4;ENSG00000005471|ENST00000649586|ABCB4;nc|ENSG00000005471|P21439|ABCB4	nc|ENSG00000005471|P21439-3|ABCB4	nc|ENSG00000005471|P21439-3|ABCB4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	518.750921	1035.48729	-0.5009	-0.00025984	-2.9097	-0.0015094	-3.4105	-0.0017692	518.7491783050452	48.249	1.095	45.539	45.231	46.326	-2.7097	0.058108	-0.00028774	NaN	51.335	43	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96492			40873	855	33728	33752							-0.029034305529876292
NPKIFMTR	8	Oxidation (M)	_NPKIFM(Oxidation (M))TR_		NPKIFM(1)TR		NPKIFM(62)TR	0	0	1			REV__tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	REV__tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	511.77655029296875	2	511.776219	1021.53789	1.7284	0.00088456	-3.2993	-0.0016885	-1.5709	-0.00080397	511.7742562812859	129.68	0.65501	129.68	129.4	130.06	0					29	13	3	0	0	0	0.60899	1	15028	15028		62.107	6.6032	1	319690	+		40874	31958	33729	33753	44253	44253		709			0.02797820291016251
NPKKAEKSD	9	Unmodified	_NPKKAEKSD_					0	0	0			REV__ENST00000478353.1_1_3:3215741-3221371:-|nuORF	REV__ENST00000478353.1_1_3:3215741-3221371:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.8004150390625	2	508.772188	1015.52982	-1.2943	-0.00065849	2.0715	0.0010539	0.77719	0.00039541	508.7726912594455	54.239	1.0472	51.426	51.025	52.072	-2.8139					33	20	3	0	0	0	0.027411	1	3700	3700		74.255	36.444	1	82610	+		40875	18173	33730	33754	44254	44254					0.022679645752305078
NPKKIIGLL	9	Unmodified	_NPKKIIGLL_					0	0	0		tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.33349609375	2	498.334227	994.653902	-1.4326	-0.00071391	1.262	0.00062888	-0.17064	-8.5035E-05	498.3347342059933	136.81	1.8563	135.72	135.27	137.12	-1.0858					84	37	3	0	0	0	0.53957	1	11092	11092		38.806	1.647	1	104120			40876	35399	33731	33755	44255	44255					0.15636087133384535
NPKKLVISI	9	Unmodified	_NPKKLVISI_					0	0	0			REV__tr|A0A553SQQ4|A0A553SQQ4_NIACIAbortivephageresistanceproteinOS=NialliacirculansOX=1397GN=CEQ21_07115PE=4SV=1	REV__tr|A0A553SQQ4|A0A553SQQ4_NIACIAbortivephageresistanceproteinOS=NialliacirculansOX=1397GN=CEQ21_07115PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	506.33306884765625	2	506.331685	1010.64882	2.439	0.0012349	-0.20398	-0.00010328	2.235	0.0011316	506.3314234730125	121.64	0.8819	121.64	121.38	122.27	0					40	18	4	0	0	0	0.42676	1	14013	14013		49.442	1.7842	1	615670	+		40877	30653	33732	33756	44256	44256					0.14391783270752967
NPKKVVVFD	9	Unmodified	_NPKKVVVFD_					0	0	0		tr|A0A553SGZ0|A0A553SGZ0_NIACISiderophoreABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_11785PE=3SV=1	tr|A0A553SGZ0|A0A553SGZ0_NIACISiderophoreABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_11785PE=3SV=1	tr|A0A553SGZ0|A0A553SGZ0_NIACISiderophoreABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_11785PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3030395507812	2	523.305667	1044.59678	-2.1227	-0.0011108	-1.8084	-0.00094634	-3.9311	-0.0020572	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.6653	1	11667	11667		24.203	0.68005	1	183010			40878	33211	33733	33757	44257	44257					0.0762661985700106
NPKNLFAIN	9	Unmodified	_NPKNLFAIN_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;FAT4|p.I3243Efs*10|1|0.29|ENSG00000196159|chr4:125450742-125450743|-/GAAAA|frameshift_variant;FAT4|p.D3244Lfs*13|1|0.23|ENSG00000196159|chr4:125450744-125450745|-/ACTTACTGTTTCGGCAA|frameshift_variant	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.746826171875	2	515.787641	1029.56073	0.7742	0.00039932	-1.1332	-0.00058448	-0.35898	-0.00018516	515.786887279765	96.777	1.3091	94.351	93.76	95.069	-2.4256					46	25	3	0	0	0	0.027462	1	8550	8550		45.952	8.1404	1	136820			40879	8571	33734	33758	44258	44258					0.047131626801501625
NPKPNKRT	8	Unmodified	_NPKPNKRT_					0	0	0			REV__ENST00000548760.2_1_12:98908612-98908672:-|nuORF	REV__ENST00000548760.2_1_12:98908612-98908672:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.7791748046875	2	477.777608	953.540663	-0.82611	-0.0003947	0.0037772	1.8047E-06	-0.82233	-0.00039289	477.7776089014007	43.823	3.0314	40.816	40.483	43.515	-3.0074					146	58	4	0	0	0	0.66057	1	2113	2113		51.335	0.14276	1	12741000	+		40880	27445	33735	33759	44259	44259					0.0620341174017085
NPKRQTLVF	9	Unmodified	_NPKRQTLVF_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	OvCa9_classI_Rep2	2	551.8206787109375	2	551.822015	1101.62948	-0.8788	-0.00048494	0.36728	0.00020268	-0.51152	-0.00028227	551.822178346759	63.297	1.3127	60.553	60.108	61.421	-2.7444					85	24	5	0	0	0	0.075543	5	4785	4774;4779;4785;4791;4804		104.06	46.246	1	1306000			40881	1827	33736	33760	44260;44261;44262;44263;44264	44262					0.08272826979850834
NPKRQTLVF	9	Unmodified	_NPKRQTLVF_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.8234252929688	2	551.822015	1101.62948	0.074648	4.1192E-05	-0.82397	-0.00045468	-0.74932	-0.00041349	551.8215032876635	64.137	1.36	60.662	60.393	61.753	-3.475					77	27	4	0	0	0	0.16264	2	4551	4551;4562		82.75	27.246	1	1730500			40882	1827	33736	33760	44265;44266	44265					0.08272826979850834
NPKRQTLVF	9	Unmodified	_NPKRQTLVF_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MATCH	OvCa99_classI_Rep5	1		2	551.822015	1101.62948	-0.26488	-0.00014617	-7.0076	-0.003867	-7.2725	-0.0040131	551.8180240905905	60.514	0.5815	60.514	60.277	60.859	0	-0.062368	-0.0072788	NaN	104.06	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	362530			40883	1827	33736	33760							0.08272826979850834
NPKRSPNTGP	10	Unmodified	_NPKRSPNTGP_					0	0	0		ENSG00000112139|ENST00000434837|MDGA1;nc|ENSG00000112139|Q8NFP4-2|MDGA1	ENSG00000112139|ENST00000434837|MDGA1	ENSG00000112139|ENST00000434837|MDGA1	MULTI-MSMS	OvCa99_classI_Rep5	1	534.2852783203125	2	534.283254	1066.55196	1.3936	0.00074458	2.2948	0.0012261	3.6884	0.0019706	534.2843679726661	147.02	1.4126	147.02	146.62	148.03	0					66	28	4	0	0	0	0.5675	1	17208	17208		45.972	10.354	1	1244100			40884	2880	33737	33761	44267	44267					0.021341890436815447
NPKTDNLVNH	10	Unmodified	_NPKTDNLVNH_					0	0	0		ENST00000418334.5_1_1:160144048-160152563:+|nuORF;ENSG00000132681|ENST00000368081|ATP1A4	ENST00000418334.5_1_1:160144048-160152563:+|nuORF	ENST00000418334.5_1_1:160144048-160152563:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	576.353271484375	2	576.293819	1150.57309	-0.46174	-0.0002661	3.7714	0.0021735	3.3097	0.0019074	576.2960926703352	72.003	0.19267	69.4	69.28	69.472	-2.6023					7	3	3	0	0	0	0.026656	1	3389	3389		56.434	15.007	1	24247			40885	4163	33738	33762	44268	44268					0.003821543525191373
NPKTSVCFQ	9	Unmodified	_NPKTSVCFQ_					0	0	0		ENST00000427969.5_1_7:878456-882177:+|nuORF	ENST00000427969.5_1_7:878456-882177:+|nuORF	ENST00000427969.5_1_7:878456-882177:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.270751953125	2	512.250034	1022.48552	1.2534	0.00064205	-1.1621	-0.00059527	0.091322	4.678E-05	512.2494942543334	143.64	0.54521	143.64	143.32	143.86	0					23	10	3	0	0	0	0.027461	1	16767	16767		25.574	0	1	87450			40886	11764	33739	33763	44269	44269					-0.02482762842601005
NPLCLAIKV	9	Unmodified	_NPLCLAIKV_					0	0	0			REV__nc|ENSG00000227345|Q86W56-5|PARG	REV__nc|ENSG00000227345|Q86W56-5|PARG	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.2645568847656	2	485.791338	969.568123	-0.89267	-0.00043365	3.8947	0.001892	3.002	0.0014584	485.7930591252757	55.393	1.4755	52.098	51.495	52.97	-3.2944					39	28	2	0	0	0	0.027462	1	3556	3556		15.642	0	1	160270	+		40887	23375	33740	33764	44270	44270					0.0821217895618247
NPLGAAVLVML	11	Unmodified	_NPLGAAVLVML_					0	0	0			REV__ENSG00000174417|ENST00000518632|TRHR	REV__ENSG00000174417|ENST00000518632|TRHR	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7933959960938	2	549.323002	1096.63145	1.7831	0.00097948	-2.8547	-0.0015681	-1.0716	-0.00058865	549.3214181091629	116.55	0.35655	116.55	116.37	116.73	0					15	7	3	0	0	0	0.025496	1	13325	13325		25.574	0	1	153680	+		40888	21829	33741	33765	44271	44271					0.0870011967344908
NPLGSLVITV	10	Unmodified	_NPLGSLVITV_					0	0	0		ENSG00000113211|ENST00000231136|PCDHB6	ENSG00000113211|ENST00000231136|PCDHB6	ENSG00000113211|ENST00000231136|PCDHB6	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.3307189941406	2	506.8055	1011.59645	-1.0124	-0.00051307	-0.62278	-0.00031563	-1.6351	-0.00082869	506.8048279988129	57.076	1.2391	54.284	53.634	54.873	-2.792					49	24	3	0	0	0	0.026956	1	4015	4015		14.137	0	1	112540			40889	2954	33742	33766	44272	44272					0.09111200137135711
NPLHWPKV	8	Unmodified	_NPLHWPKV_					0	0	0		ENST00000502976.5_1_3:128889209-128889263:-|nuORF	ENST00000502976.5_1_3:128889209-128889263:-|nuORF	ENST00000502976.5_1_3:128889209-128889263:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.7821960449219	2	495.779619	989.544686	-1.0728	-0.00053187	3.592	0.0017809	2.5192	0.001249	495.7812739834416	44.548	2.2506	41.51	40.762	43.013	-3.0385					117	43	4	0	0	0	0.73626	1	2254	2254		33.516	0.70317	1	1208700			40890	12860	33743	33767	44273	44273					0.049495012338979905
NPLIIEVFVQT	11	Unmodified	_NPLIIEVFVQT_					0	0	0		NCBP1|p.K543I|1|0.07|ENSG00000136937|chr9:97662069-97662069|A/T|missense_variant	NCBP1|p.K543I|1|0.07|ENSG00000136937|chr9:97662069-97662069|A/T|missense_variant	NCBP1|p.K543I|1|0.07|ENSG00000136937|chr9:97662069-97662069|A/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	424.9104919433594	3	424.911456	1271.71254	1.7676	0.00075109	-4.0433	-0.001718	-2.2757	-0.00096696	424.90976624626023	65.471	1.3717	62.526	62.148	63.519	-2.9459					98	26	5	0	0	0	0.70848	1	2694	2694		26.75	1.6237	1	905110			40891	15422	33744	33768	44274	44274					0.08755098917163195
NPLLFDLQD	9	Unmodified	_NPLLFDLQD_					0	0	0		DDX60L|p.R1229Pfs*17|1|0.04|ENSG00000181381|chr4:168394589-168394590|-/GAAGAGTAAAGGGTTATGACCAG|frameshift_variant	DDX60L|p.R1229Pfs*17|1|0.04|ENSG00000181381|chr4:168394589-168394590|-/GAAGAGTAAAGGGTTATGACCAG|frameshift_variant	DDX60L|p.R1229Pfs*17|1|0.04|ENSG00000181381|chr4:168394589-168394590|-/GAAGAGTAAAGGGTTATGACCAG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.3082885742188	2	537.776939	1073.53933	-1.6778	-0.00090228	-2.5438	-0.001368	-4.2216	-0.0022703	537.7755609139281	68.716	1.2439	66.096	65.671	66.915	-2.6203					67	24	4	0	0	0	0.027137	1	5399	5399		87.696	5.4559	1	79083			40892	725	33745	33769	44275	44275					0.005497328607589225
NPLLFDLQD	9	Unmodified	_NPLLFDLQD_					0	0	0		DDX60L|p.R1229Pfs*17|1|0.04|ENSG00000181381|chr4:168394589-168394590|-/GAAGAGTAAAGGGTTATGACCAG|frameshift_variant	DDX60L|p.R1229Pfs*17|1|0.04|ENSG00000181381|chr4:168394589-168394590|-/GAAGAGTAAAGGGTTATGACCAG|frameshift_variant	DDX60L|p.R1229Pfs*17|1|0.04|ENSG00000181381|chr4:168394589-168394590|-/GAAGAGTAAAGGGTTATGACCAG|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	537.776939	1073.53933	-1.5108	-0.00081247	-2.9556	-0.0015895	-4.4664	-0.0024019	537.7753649742516	69.432	1.0743	65.951	65.713	66.787	-3.4812	-0.051811	0.00066514	NaN	87.696	62	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	424110			40893	725	33745	33769							0.005497328607589225
NPLLKPCL	8	Carbamidomethyl (C)	_NPLLKPC(Carbamidomethyl (C))L_	NPLLKPC(1)L		NPLLKPC(60)L		0	1	0			REV__nc|ENSG00000167395|O15015-1|ZNF646	REV__nc|ENSG00000167395|O15015-1|ZNF646	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.7785949707031	2	477.775688	953.536823	-0.82611	-0.0003947	4.0222	0.0019217	3.1961	0.001527	477.7776089014007	43.823	3.0314	40.816	40.483	43.515	-3.0074					146	58	4	0	0	0	0.61758	1	2186	2186		60.294	6.9425	1	12741000	+		40894	21275	33746	33770	44276	44276	236				0.058196059221018004
NPLPSKEMP	9	Unmodified	_NPLPSKEMP_					0	0	0			REV__PRUNE2|p.V2237Cfs*11|1|0.06|ENSG00000106772|chr9:76705569-76705570|-/T|frameshift_variant	REV__PRUNE2|p.V2237Cfs*11|1|0.06|ENSG00000106772|chr9:76705569-76705570|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.3316650390625	2	506.760235	1011.50592	-0.98411	-0.00049871	-0.87701	-0.00044443	-1.8611	-0.00094314	507.2613348127408	57.149	1.8368	54.357	53.386	55.223	-2.792					88	36	4	0	0	0	0.027462	1	4009	4009		21.96	0	1	75256	+		40895	17824	33747	33771	44277	44277					0.0006240781721089661
NPLRKLKLV	9	Unmodified	_NPLRKLKLV_					0	0	0		RAB6C|p.F14L|1|0.44|ENSG00000222014|chr2:129980155-129980155|T/C|missense_variant	RAB6C|p.F14L|1|0.44|ENSG00000222014|chr2:129980155-129980155|T/C|missense_variant	RAB6C|p.F14L|1|0.44|ENSG00000222014|chr2:129980155-129980155|T/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.296630859375	2	540.866226	1079.7179	-0.80372	-0.00043471	0.76729	0.000415	-0.03643	-1.9704E-05	540.8665235428082	21.786	0.50531	20.447	20.27	20.776	-1.3386					19	9	3	0	0	0	0.027462	1	235	235		17.365	0	1	23585			40896	15538	33748	33772	44278	44278					0.18122867290298927
NPLRRALL	8	Unmodified	_NPLRRALL_					0	0	0			REV__ENST00000465511.1_1_11:118431647-118432142:+|nuORF	REV__ENST00000465511.1_1_11:118431647-118432142:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.7787170410156	2	476.806168	951.597784	-0.71314	-0.00034003	0.84619	0.00040347	0.13305	6.3438E-05	476.8064418221118	44.527	0.30537	41.489	41.258	41.564	-3.0385					7	5	2	0	0	0	0.028476	1	2197	2197		33.516	0	1	12892	+		40897	26169	33749	33773	44279	44279					0.12004879016558334
NPLSPLSAKRR	11	Unmodified	_NPLSPLSAKRR_					0	0	0		nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1;PHRF1-PTDSS2|1|fusion;ENST00000532550.1_1_11:601671-606691:+|nuORF	nc|ENSG00000070047|Q9P1Y6-2|PHRF1	nc|ENSG00000070047|Q9P1Y6-2|PHRF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8690185546875	2	619.870028	1237.7255	-3.1194	-0.0019336	2.0434	0.0012667	-1.076	-0.00066696	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.70761	1	14920	14920		27.047	2.5281	1	806750			40898	1418	33750	33774	44280	44280					0.11614974819917734
NPLTIRLK	8	Unmodified	_NPLTIRLK_					0	0	0		tr|A0A7D6ZMI4|A0A7D6ZMI4_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12050PE=3SV=1	tr|A0A7D6ZMI4|A0A7D6ZMI4_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12050PE=3SV=1	tr|A0A7D6ZMI4|A0A7D6ZMI4_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12050PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	477.8091125488281	2	477.808377	953.6022	2.0965	0.0010017	1.8424	0.00088031	3.9389	0.0018821	477.8090798382224	125.72	1.4063	124.66	124.26	125.67	-1.0519					71	26	4	0	0	0	0.68714	1	9816	9816		45.952	0	1	261640			40899	35665	33751	33775	44281	44281					0.12354343439460536
NPLVNEIKLK	10	Unmodified	_NPLVNEIKLK_					0	0	0		tr|A0A553SIF1|A0A553SIF1_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_14740PE=4SV=1	tr|A0A553SIF1|A0A553SIF1_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_14740PE=4SV=1	tr|A0A553SIF1|A0A553SIF1_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_14740PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3567504882812	2	584.358431	1166.70231	-2.312	-0.0013511	-1.149	-0.00067141	-3.461	-0.0020225	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.79213	1	14656	14656		19.997	0	1	180810			40900	33376	33752	33776	44282	44282					0.12562535982578993
NPMPKLKVLY	10	Unmodified	_NPMPKLKVLY_					0	0	0		ENSG00000184564|ENST00000647374|SLITRK6;SLITRK6|p.L747Pfs*49|1|0.08|ENSG00000184564|chr13:85794270-85794271|-/TATACATATAATATATGGAAGGGCATAAAGG|frameshift_variant	ENSG00000184564|ENST00000647374|SLITRK6	ENSG00000184564|ENST00000647374|SLITRK6	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.88568115234375	3	401.570377	1201.6893	0.86441	0.00034712	0.39184	0.00015735	1.2562	0.00050447	401.5704949518544	24.964	0.4039	24.964	24.788	25.192	0					10	7	2	0	0	0	0.027429	1	503	503		16.007	0.67366	1	38230			40901	8170	33753	33777	44283	44283					0.09652381598880311
NPMTRIIKSSM	11	Unmodified	_NPMTRIIKSSM_					0	0	0			REV__tr|A0A553SG13|A0A553SG13_NIACIPyrroline-5-carboxylatereductaseOS=NialliacirculansOX=1397GN=proCPE=3SV=1	REV__tr|A0A553SG13|A0A553SG13_NIACIPyrroline-5-carboxylatereductaseOS=NialliacirculansOX=1397GN=proCPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	427.2406005859375	3	426.561664	1276.66316	-0.03829	-1.6333E-05	3.9032	0.001665	3.8649	0.0016486	426.89802463429464	47.536	0.30188	47.536	47.336	47.638	0					9	6	2	0	0	0	0.026007	1	3425	3425		8.0344	0	1	97587	+		40902	29646	33754	33778	44284	44284					0.0358974436508106
NPMVDVKVD	9	Unmodified	_NPMVDVKVD_					0	0	0		nc|ENSG00000142230|Q9UBE0-2|SAE1;nc|ENSG00000142230|Q9UBE0-3|SAE1;ENSG00000142230|ENST00000270225|SAE1	nc|ENSG00000142230|Q9UBE0-2|SAE1	nc|ENSG00000142230|Q9UBE0-2|SAE1	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.30908203125	2	508.757692	1015.50083	-1.2465	-0.00063416	1.2881	0.00065534	0.041621	2.1175E-05	508.7583051530202	82.603	0.84312	80.307	80.089	80.932	-2.2963					26	16	2	0	0	0	0.027198	1	4677	4677		75.043	3.1658	1	99561			40903	4963	33755	33779	44285	44285					-0.00629896045404621
NPMVDVKVD	9	Unmodified	_NPMVDVKVD_					0	0	0		nc|ENSG00000142230|Q9UBE0-2|SAE1;nc|ENSG00000142230|Q9UBE0-3|SAE1;ENSG00000142230|ENST00000270225|SAE1	nc|ENSG00000142230|Q9UBE0-2|SAE1	nc|ENSG00000142230|Q9UBE0-2|SAE1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	508.757692	1015.50083	2.4633	0.0012532	-0.34418	-0.0001751	2.1191	0.0010781	508.75785082453217	80.316	0.45509	80.316	80.074	80.529	0	-0.067482	-0.0012709	NaN	75.043	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94663			40904	4963	33755	33779							-0.00629896045404621
NPNILDNFP	9	Unmodified	_NPNILDNFP_					0	0	0			REV__nc|ENSG00000168944|Q8N960-2|CEP120	REV__nc|ENSG00000168944|Q8N960-2|CEP120	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.3004150390625	2	522.261456	1042.50836	0.7667	0.00040042	0.72509	0.00037869	1.4918	0.0007791	522.261716638129	81.936	1.2442	80.287	79.716	80.961	-1.6485					35	23	2	0	0	0	0.027403	1	6931	6931		90.37	27.391	1	28826	+		40905	21421	33756	33780	44286	44286					-0.011194204534831442
NPNISVYTF	9	Unmodified	_NPNISVYTF_					0	0	0			REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19	REV__nc|ENSG00000165194|Q8TAB3-3|PCDH19	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.84814453125	2	527.763832	1053.51311	2.3562	0.0012435	3.3475	0.0017667	5.7037	0.0030102	527.7657944622257	116.31	1.0606	116.31	115.49	116.55	0					35	22	2	0	0	0	0.027462	1	13294	13294		16.473	0	1	83298	+		40906	16127	33757	33781	44287	44287					-0.011505363107289668
NPNLRKNVL	9	Unmodified	_NPNLRKNVL_					0	0	0		ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1;ENSG00000187735|ENST00000521604|TCEA1;ATP6V1H-TCEA1|1|fusion;ATP6V1H-TCEA1|2|fusion	ENST00000521086.6_1_8:54891227-54912595:-|nuORF	ENST00000521086.6_1_8:54891227-54912595:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	534.3189086914062	2	534.31964	1066.62473	-2.0296	-0.0010845	1.4628	0.00078158	-0.56686	-0.00030289	534.3203965830495	54.412	1.8937	51.599	51.025	52.918	-2.8139					100	37	4	0	0	0	0.037627	12	3729	3709;3713;3717;3723;3729;3735;3741;3747;3753;3760;3768;3774		128.86	57.565	1	1202800			40907	133	33758	33782	44288;44289;44290;44291;44292;44293;44294;44295;44296;44297;44298;44299	44292					0.09407942837083283
NPNLRKNVL	9	Unmodified	_NPNLRKNVL_					0	0	0		ENST00000521086.6_1_8:54891227-54912595:-|nuORF;nc|ENSG00000187735|P23193-2|TCEA1;ENSG00000187735|ENST00000521604|TCEA1;ATP6V1H-TCEA1|1|fusion;ATP6V1H-TCEA1|2|fusion	ENST00000521086.6_1_8:54891227-54912595:-|nuORF	ENST00000521086.6_1_8:54891227-54912595:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.3211669921875	2	534.31964	1066.62473	-1.8976	-0.001014	1.1621	0.00062095	-0.73552	-0.000393	534.3202840224436	54.764	2.4944	51.516	50.825	53.319	-3.2474					112	48	4	0	0	0	0.032351	7	3421	3400;3409;3421;3434;3447;3459;3472		133.47	51.164	1	3589100			40908	133	33758	33782	44300;44301;44302;44303;44304;44305;44306	44302					0.09407942837083283
NPNNLASKSLL	11	Unmodified	_NPNNLASKSLL_					0	0	0		tr|A0A7D6VSZ7|A0A7D6VSZ7_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11170PE=4SV=1	tr|A0A7D6VSZ7|A0A7D6VSZ7_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11170PE=4SV=1	tr|A0A7D6VSZ7|A0A7D6VSZ7_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11170PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	585.8104858398438	2	585.827495	1169.64044	-0.0057151	-3.3481E-06	-3.1831	-0.0018647	-3.1888	-0.0018681	585.8255816965251	67.105	0.14854	63.615	63.541	63.689	-3.4902					4	2	2	0	0	0	0.025554	1	4921	4921		48.602	0	1	10708			40909	35071	33759	33783	44307	44307					0.062401845634894926
NPNQNKNVAL	10	Unmodified	_NPNQNKNVAL_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	556.2941284179688	2	556.296362	1110.57817	-1.0873	-0.00060483	1.2085	0.00067226	0.12121	6.7429E-05	556.2966204787289	48.995	1.3496	45.857	45.368	46.718	-3.1387					85	25	5	0	0	0	0.37918	2	2746	2733;2746		71.296	19.96	1	426370			40910	1341	33760	33784	44308;44309	44309					0.027304582151373324
NPNQNKNVAL	10	Unmodified	_NPNQNKNVAL_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	556.296362	1110.57817	-0.20642	-0.00011483	-0.26638	-0.00014819	-0.4728	-0.00026302	556.2960270981827	48.706	0.89318	45.946	45.679	46.572	-2.7603	0.044585	-0.00032226	NaN	71.296	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82404			40911	1341	33760	33784							0.027304582151373324
NPNTTWLE	8	Unmodified	_NPNTTWLE_					0	0	0			REV__tr|A0A553SH47|A0A553SH47_NIACIAdenosine5'-phosphosulfatereductaseOS=NialliacirculansOX=1397GN=cysHPE=3SV=1	REV__tr|A0A553SH47|A0A553SH47_NIACIAdenosine5'-phosphosulfatereductaseOS=NialliacirculansOX=1397GN=cysHPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	488.285888671875	2	487.732532	973.45051	-0.023973	-1.1692E-05	-0.13451	-6.5604E-05	-0.15848	-7.7296E-05	487.7320252746134	102.11	0.73689	99.91	99.727	100.46	-2.1994					23	13	2	0	0	0	0.028476	1	9173	9173		18.324	0	1	20106	+		40912	29773	33761	33785	44310	44310					-0.037276823789056834
NPNVKMGGR	9	Unmodified	_NPNVKMGGR_					0	0	0		nc|ENSG00000086062|P15291-2|B4GALT1;ENSG00000086062|ENST00000379731|B4GALT1	nc|ENSG00000086062|P15291-2|B4GALT1	nc|ENSG00000086062|P15291-2|B4GALT1	MULTI-SECPEP	OvCa9_classI_Rep3	3	485.78839111328125	2	486.755818	971.497083	-1.4043	-0.00068357	-3.5883	-0.0017466	-4.9926	-0.0024302	486.7539344726934	87.142	1.0711	84.966	84.531	85.602	-2.1768					33	20	2	0	0	0	0.027462	1	5296	5296		20.947	0	1	26270			40913	1747	33762	33786	44311	44311					0.010194789714091712
NPPHQGTREIL	11	Unmodified	_NPPHQGTREIL_					0	0	0		tr|A0A553SGD3|A0A553SGD3_NIACIprotein-tyrosine-phosphataseOS=NialliacirculansOX=1397GN=CEQ21_10600PE=3SV=1	tr|A0A553SGD3|A0A553SGD3_NIACIprotein-tyrosine-phosphataseOS=NialliacirculansOX=1397GN=CEQ21_10600PE=3SV=1	tr|A0A553SGD3|A0A553SGD3_NIACIprotein-tyrosine-phosphataseOS=NialliacirculansOX=1397GN=CEQ21_10600PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	421.2257385253906	3	421.226438	1260.65748	0.71741	0.00030219	-0.91094	-0.00038371	-0.19353	-8.152E-05	421.2260829491031	66.384	2.5241	63.688	63.319	65.843	-2.6958					143	50	5	0	0	0	0.5804	2	5157	5139;5157		46.457	7.7032	1	1079000			40914	33145	33763	33787	44312;44313	44313					0.03758105169299597
NPPHSLLLPHL	11	Unmodified	_NPPHSLLLPHL_					0	0	0			REV__chr2:208128475-208129441|160|28.99|0.09|8.39|-|2|CRYGC,CRYGC|1	REV__chr2:208128475-208129441|160|28.99|0.09|8.39|-|2|CRYGC,CRYGC|1	MULTI-MSMS	OvCa9_classI_Rep3	3	413.2400207519531	3	413.239907	1236.69789	2.1217	0.00087677	0.93404	0.00038598	3.0557	0.0012628	413.24014103402243	64.54	2.2304	61.547	60.987	63.218	-2.9933					100	43	4	0	0	0	0.70032	1	2496	2496		29.551	3.4874	1	320450	+		40915	15995	33764	33788	44314	44314					0.08901071559716911
NPPQLALRYT	10	Unmodified	_NPPQLALRYT_					0	0	0			REV__ENST00000313143.7_1_3:183888627-183888867:+|nuORF	REV__ENST00000313143.7_1_3:183888627-183888867:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	586.8232421875	2	586.824755	1171.63496	-3.1356	-0.00184	1.1921	0.00069958	-1.9434	-0.0011405	586.8253279417393	148.8	1.3036	148.57	148.17	149.47	-0.22696					68	25	4	0	0	0	0.78463	1	15059	15059		20.947	2.6848	1	137330	+		40916	24366	33765	33789	44315	44315					0.05600505771644748
NPPQLALRYT	10	Unmodified	_NPPQLALRYT_					0	0	0			REV__ENST00000313143.7_1_3:183888627-183888867:+|nuORF	REV__ENST00000313143.7_1_3:183888627-183888867:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	586.8243408203125	2	586.824755	1171.63496	-5.6686	-0.0033265	3.6369	0.0021342	-2.0317	-0.0011922	586.8267226357335	149.07	1.5069	148.12	147.65	149.16	-0.9512					81	29	4	0	0	0	0.66721	1	12620	12620		34.173	8.7224	1	213470	+		40917	24366	33765	33789	44316	44316					0.05600505771644748
NPPQLALRYT	10	Unmodified	_NPPQLALRYT_					0	0	0			REV__ENST00000313143.7_1_3:183888627-183888867:+|nuORF	REV__ENST00000313143.7_1_3:183888627-183888867:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.8235473632812	2	586.824755	1171.63496	-2.8595	-0.001678	1.0473	0.0006146	-1.8121	-0.0010634	586.8252260558515	149.49	1.5706	148.05	147.61	149.18	-1.4344					87	31	4	0	0	0	0.59703	1	14779	14779		42.396	10.866	1	272440	+		40918	24366	33765	33789	44317	44317					0.05600505771644748
NPPSFLLSF	9	Unmodified	_NPPSFLLSF_					0	0	0		ENST00000157600.7_2_3:8612384-8612732:+|nuORF	ENST00000157600.7_2_3:8612384-8612732:+|nuORF	ENST00000157600.7_2_3:8612384-8612732:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.8446350097656	2	511.271293	1020.52803	-1.2675	-0.00064803	2.3754	0.0012145	1.108	0.00056646	511.7754476453819	124.7	0.25832	123.31	123.18	123.44	-1.3908					5	4	2	0	0	0	0.027462	1	11826	11826		20.947	6.2828	1	8548.7			40919	9635	33766	33790	44318	44318					0.018589555572816607
NPPSVLFG	8	Unmodified	_NPPSVLFG_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK;SYMPK|p.A772D|1|0.5|ENSG00000125755|chr19:45826240-45826240|G/T|missense_variant	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-MSMS	OvCa9_classI_Rep2	2	415.7212829589844	2	415.723978	829.433404	-1.0163	-0.00042249	-3.9124	-0.0016265	-4.9287	-0.002049	415.72221629127785	119.3	1.3301	119.13	118.81	120.14	-0.17138					54	26	3	0	0	0	0.74971	1	11476	11476		26.796	1.3459	1	206540			40920	3733	33767	33791	44319	44319					0.01186441805953109
NPQARLHI	8	Unmodified	_NPQARLHI_					0	0	0			REV__ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	REV__ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	474.7720031738281	2	474.772326	947.530098	-2.2434	-0.0010651	2.3114	0.0010974	0.067932	3.2252E-05	474.77329814512956	37.51	1.38	34.8	34.287	35.667	-2.7097					69	27	4	0	0	0	0.73288	1	1668	1668		35.201	1.6851	1	277560	+		40921	15573	33768	33792	44320	44320					0.05423429085760745
NPQARPLR	8	Unmodified	_NPQARPLR_					0	0	0		ENSG00000198265|ENST00000358691|HELZ;nc|ENSG00000198265|P42694-2|HELZ	ENSG00000198265|ENST00000358691|HELZ	ENSG00000198265|ENST00000358691|HELZ	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.7483215332031	2	476.277775	950.540997	1.1799	0.00056194	4.3045	0.0020501	5.4843	0.0026121	476.2796111049448	90.853	0.51712	90.853	90.656	91.174	0					27	12	4	0	0	0	0.028476	1	9752	9752		7.6903	0	1	1165200			40922	8802	33769	33793	44321	44321					0.06374831460038877
NPQDTYCRGD	10	Unmodified	_NPQDTYCRGD_					0	0	0		nc|ENSG00000204361|Q96DL1-3|NXPE2;ENSG00000204361|ENST00000389586|NXPE2	nc|ENSG00000204361|Q96DL1-3|NXPE2	nc|ENSG00000204361|Q96DL1-3|NXPE2	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.33056640625	2	584.738019	1167.46149	1.5173	0.00088725	3.535	0.0020671	5.0523	0.0029543	584.7410245647566	112.54	0.35614	112.54	112.43	112.79	0					10	7	2	0	0	0	0.026956	1	12802	12802		34.173	14.176	1	130580			40923	8974	33770	33794	44322	44322					-0.11554648066930895
NPQERTLTL	9	Unmodified	_NPQERTLTL_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OvCa9_classI_Rep2	2	536.292236328125	2	536.293288	1070.57202	-0.30313	-0.00016257	0.11156	5.983E-05	-0.19157	-0.00010274	536.2932074237481	71.18	2.1764	68.673	67.727	69.903	-2.5071					94	41	5	0	0	0	0.055627	4	5721	5717;5721;5728;5737		115.49	46.707	1	684720			40924	1946	33771	33795	44323;44324;44325;44326	44324					0.039559399836207376
NPQERTLTL	9	Unmodified	_NPQERTLTL_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.2940673828125	2	536.293288	1070.57202	-2.0295	-0.0010884	0.94638	0.00050754	-1.0831	-0.00058087	536.2937790069054	72.138	2.0348	68.682	68.174	70.209	-3.4563					93	41	5	0	0	0	0.010478	5	5533	5524;5533;5545;5559;5570		167.23	79.474	1	2546600			40925	1946	33771	33795	44327;44328;44329;44330;44331	44328					0.039559399836207376
NPQKSEWI	8	Unmodified	_NPQKSEWI_					0	0	0		nc|ENSG00000087589|Q9NQ75-2|CASS4;ENST00000497244.1_1_20:54987478-55028248:+|nuORF;ENSG00000087589|ENST00000679887|CASS4	nc|ENSG00000087589|Q9NQ75-2|CASS4	nc|ENSG00000087589|Q9NQ75-2|CASS4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.806640625	2	501.256174	1000.49779	-0.579	-0.00029023	3.3558	0.0016821	2.7768	0.0013919	501.2580866931339	58.356	1.156	54.964	54.397	55.553	-3.392					39	22	2	0	0	0	0.028476	1	3832	3832		40.778	7.9657	1	48259			40926	1778	33772	33796	44332	44332					-0.0024340310790194053
NPQQVVEGCC	10	Unmodified	_NPQQVVEGCC_					0	0	0		ENSG00000223658|ENST00000475092|C1GALT1C1L	ENSG00000223658|ENST00000475092|C1GALT1C1L	ENSG00000223658|ENST00000475092|C1GALT1C1L	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.862548828125	2	538.728609	1075.44266	0.64717	0.00034865	1.5955	0.00085953	2.2426	0.0012082	539.2307016585246	133.08	0.24548	131.95	131.78	132.03	-1.1249					6	4	2	0	0	0	0.026871	1	10658	10658		29.15	0	1	8576.7			40927	9252	33773	33797	44333	44333					-0.09203900962324951
NPQRYILGP	9	Unmodified	_NPQRYILGP_					0	0	0			REV__ENSG00000145192|ENST00000411641|AHSG	REV__ENSG00000145192|ENST00000411641|AHSG	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.3274536132812	2	529.293091	1056.57163	0.61294	0.00032442	2.2554	0.0011938	2.8684	0.0015182	529.2943865373628	66.855	0.39419	66.855	66.661	67.055	0					12	9	2	0	0	0	0.027462	1	6240	6240		12.959	0	1	215450	+		40928	19953	33774	33798	44334	44334					0.04560565054430299
NPQSEALQLQ	10	Unmodified	_NPQSEALQLQ_					0	0	0			REV__CCDC141|p.K1308Efs*10|1|0.17|ENSG00000163492|chr2:178837296-178837297|TT/-|frameshift_variant	REV__CCDC141|p.K1308Efs*10|1|0.17|ENSG00000163492|chr2:178837296-178837297|TT/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.85302734375	2	564.288202	1126.56185	-0.21811	-0.00012307	-0.30224	-0.00017055	-0.52034	-0.00029362	564.2877625613953	43.394	0.42475	43.394	43.27	43.694	0					16	9	2	0	0	0	0.026994	1	2867	2867		19.104	0	1	118800	+		40929	15748	33775	33799	44335	44335					0.0036333225839371153
NPRALSFVL	9	Unmodified	_NPRALSFVL_					0	0	0		ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-4|OAS1;nc|ENSG00000089127|P00973-2|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1	ENST00000549820.1_1_12:113344820-113354315:+|nuORF	ENST00000549820.1_1_12:113344820-113354315:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	508.7981262207031	2	508.798009	1015.58147	-0.073799	-3.7549E-05	-0.055959	-2.8472E-05	-0.12976	-6.602E-05	508.79781426148145	110.04	1.2366	109.86	109.56	110.8	-0.17236					63	24	4	0	0	0	0.37135	2	10349	10343;10349		54.776	8.8244	1	341650			40930	1810	33776	33800	44336;44337	44337					0.07429753059807354
NPRALSFVL	9	Unmodified	_NPRALSFVL_					0	0	0		ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-4|OAS1;nc|ENSG00000089127|P00973-2|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1	ENST00000549820.1_1_12:113344820-113354315:+|nuORF	ENST00000549820.1_1_12:113344820-113354315:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	508.7972412109375	2	508.798009	1015.58147	0.81847	0.00041644	-0.94994	-0.00048333	-0.13146	-6.6888E-05	508.79733973449856	111.11	1.4395	110.01	109.65	111.09	-1.1038					68	28	3	0	0	0	0.3076	3	8069	8057;8069;8077		62.107	8.756	1	372870			40931	1810	33776	33800	44338;44339;44340	44339					0.07429753059807354
NPRATYQL	8	Unmodified	_NPRATYQL_					0	0	0			REV__ENST00000468588.1_1_1:109779017-109779290:+|nuORF	REV__ENST00000468588.1_1_1:109779017-109779290:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.2966003417969	2	481.756341	961.498129	1.9796	0.00095366	-0.9848	-0.00047443	0.99476	0.00047923	481.755816677888	82.012	0.28709	82.012	81.814	82.101	0					10	6	2	0	0	0	0.028476	1	8454	8454		20.947	0	1	179640	+		40932	26228	33777	33801	44341	44341					0.01584016611923289
NPRCRREL	8	Unmodified	_NPRCRREL_					0	0	0			REV__nc|ENSG00000151332|Q9NS73-3|MBIP	REV__nc|ENSG00000151332|Q9NS73-3|MBIP	MULTI-MSMS	OvCa9_classI_Rep3	3	522.2806396484375	2	522.279992	1042.54543	1.2282	0.00064146	0.9971	0.00052076	2.2253	0.0011622	522.280355544447	122.07	1.5723	121.04	120.38	121.95	-1.0286					61	29	3	0	0	0	0.62934	1	9380	9380		57.811	4.4598	1	85010	+		40933	20223	33778	33802	44342	44342					0.02585972611291254
NPRCRREL	8	Unmodified	_NPRCRREL_					0	0	0			REV__nc|ENSG00000151332|Q9NS73-3|MBIP	REV__nc|ENSG00000151332|Q9NS73-3|MBIP	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.28076171875	2	522.279992	1042.54543	-0.20632	-0.00010776	2.1269	0.0011108	1.9205	0.0010031	522.2809816170394	122.35	1.6072	120.99	120.44	122.05	-1.3666					59	31	3	0	0	0	0.64371	1	11546	11546		54.776	7.119	1	98359	+		40934	20223	33778	33802	44343	44343					0.02585972611291254
NPRDPPSWSVL	11	Unmodified	_NPRDPPSWSVL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OvCa9_classI_Rep2	2	634.3251953125	2	634.325119	1266.63569	-1.8213	-0.0011553	1.5825	0.0010038	-0.2388	-0.00015148	634.3259538360488	100.62	1.2395	99.791	99.509	100.75	-0.83051					63	24	4	0	0	0	0.41656	3	9210	9210;9216;9223		59.931	19.987	1	226830			40935	4552	33779	33803	44344;44345;44346	44344					0.013033004206818077
NPRDPPSWSVL	11	Unmodified	_NPRDPPSWSVL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	634.3265991210938	2	634.325119	1266.63569	0.035857	2.2745E-05	-0.50758	-0.00032197	-0.47172	-0.00029923	634.324735536562	102.08	1.6237	99.88	99.573	101.2	-2.1994					51	30	2	0	0	0	0.25285	2	9184	9184;9204		72.879	24.92	1	253200			40936	4552	33779	33803	44347;44348	44347					0.013033004206818077
NPRDPPSWSVL	11	Unmodified	_NPRDPPSWSVL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	634.325119	1266.63569	-0.71539	-0.00045379	0.45362	0.00028774	-0.26177	-0.00016605	634.3253372963454	101.45	1.2582	99.84	99.551	100.81	-1.6053	0.0029294	-6.1424E-06	NaN	72.879	44	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	282140			40937	4552	33779	33803							0.013033004206818077
NPRGNLRKF	9	Unmodified	_NPRGNLRKF_					0	0	0		ENSG00000049247|ENST00000361696|UTS2;nc|ENSG00000049247|O95399-2|UTS2	ENSG00000049247|ENST00000361696|UTS2	ENSG00000049247|ENST00000361696|UTS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.3270874023438	2	551.317432	1100.62031	-0.1038	-5.7224E-05	-1.4446	-0.00079641	-1.5483	-0.00085363	551.3166492940302	32.577	0.58626	32.577	32.403	32.989	0					31	11	4	0	0	0	0.027462	1	1423	1423		37.159	2.9866	1	908560			40938	1166	33780	33804	44349	44349					0.07402478414155667
NPRIPYTEL	9	Unmodified	_NPRIPYTEL_					0	0	0		ENSG00000108773|ENST00000225916|KAT2A;nc|ENSG00000108773|Q92830-2|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.7988891601562	2	551.798206	1101.58186	-0.47606	-0.00026269	-0.15931	-8.791E-05	-0.63538	-0.0003506	551.7981218897612	93.923	1.4828	91.416	91.14	92.622	-2.5072					62	30	3	0	0	0	0.083631	1	8214	8214		101.6	24.827	1	254890			40939	2673	33781	33805	44350	44350					0.035131279889810685
NPRIPYTEL	9	Unmodified	_NPRIPYTEL_					0	0	0		ENSG00000108773|ENST00000225916|KAT2A;nc|ENSG00000108773|Q92830-2|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	551.798206	1101.58186	0.95211	0.00052537	-1.2215	-0.00067402	-0.26939	-0.00014865	551.7975106744098	92.685	1.4988	91.517	91.129	92.628	-1.168	0.059757	-0.001185	NaN	101.6	74	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	180190			40940	2673	33781	33805							0.035131279889810685
NPRIPYTEL	9	Unmodified	_NPRIPYTEL_					0	0	0		ENSG00000108773|ENST00000225916|KAT2A;nc|ENSG00000108773|Q92830-2|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	551.798206	1101.58186	-1.6864	-0.00093056	1.6861	0.0009304	-0.00028949	-1.5974E-07	551.7990917511493	93.401	1.1064	91.439	90.981	92.087	-1.9617	-0.018182	0.0020239	NaN	101.6	59	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	300020			40941	2673	33781	33805							0.035131279889810685
NPRKHITSL	9	Unmodified	_NPRKHITSL_					0	0	0		ENST00000521942.5_1_5:70344502-70358599:-|nuORF;ENST00000523003.5_1_5:70351153-70358599:-|nuORF;ENST00000522654.5_1_5:70344846-70358599:-|nuORF;ENST00000502619.5_1_5:68860950-68874677:+|nuORF;ENSG00000183474|ENST00000380729|GTF2H2C;ENSG00000145736|ENST00000274400|GTF2H2;ENST00000508065.7_1_5:69716099-69743177:+|nuORF;ENST00000507549.7_1_5:69717595-69723542:+|nuORF	ENST00000521942.5_1_5:70344502-70358599:-|nuORF	ENST00000521942.5_1_5:70344502-70358599:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	533.3116455078125	2	533.311815	1064.60908	-1.0201	-0.00054405	0.69126	0.00036866	-0.32887	-0.00017539	533.3120608238993	40.28	1.7779	37.571	37.202	38.98	-2.7097					89	35	4	0	0	0	0.083631	7	2044	2014;2019;2025;2031;2037;2044;2064		101.6	52.159	1	555430			40942	13133	33782	33806	44351;44352;44353;44354;44355;44356;44357	44356					0.07935656320046292
NPRKHITSL	9	Unmodified	_NPRKHITSL_					0	0	0		ENST00000521942.5_1_5:70344502-70358599:-|nuORF;ENST00000523003.5_1_5:70351153-70358599:-|nuORF;ENST00000522654.5_1_5:70344846-70358599:-|nuORF;ENST00000502619.5_1_5:68860950-68874677:+|nuORF;ENSG00000183474|ENST00000380729|GTF2H2C;ENSG00000145736|ENST00000274400|GTF2H2;ENST00000508065.7_1_5:69716099-69743177:+|nuORF;ENST00000507549.7_1_5:69717595-69723542:+|nuORF	ENST00000521942.5_1_5:70344502-70358599:-|nuORF	ENST00000521942.5_1_5:70344502-70358599:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.3112182617188	2	533.311815	1064.60908	-1.6	-0.00085332	1.4077	0.00075072	-0.19237	-0.00010259	533.3126639118636	40.297	1.245	37.343	37.012	38.257	-2.9541					82	23	5	0	0	0	0.064985	5	1741	1706;1717;1729;1741;1754		110.12	41.333	1	1343000			40943	13133	33782	33806	44358;44359;44360;44361;44362	44361					0.07935656320046292
NPRLHTPM	8	Unmodified	_NPRLHTPM_					0	0	0		ENSG00000184698|ENST00000642046|OR51M1	ENSG00000184698|ENST00000642046|OR51M1	ENSG00000184698|ENST00000642046|OR51M1	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.2676086425781	2	483.252911	964.49127	0.051991	2.5125E-05	-2.8323	-0.0013687	-2.7803	-0.0013436	483.25124208428844	57.176	0.97841	57.176	56.459	57.438	0					36	22	2	0	0	0	0.028476	1	4747	4747		7.1934	0	1	180860			40944	8184	33783	33807	44363	44363					0.007603804597124508
NPRLLRVAL	9	Unmodified	_NPRLLRVAL_					0	0	0		ENST00000502974.1_1_4:74904133-74904340:-|nuORF;ENST00000510048.1_1_4:74964514-74964837:-|nuORF;ENST00000510390.1_1_4:74903808-74904340:-|nuORF;ENST00000509101.1_1_4:74735175-74735707:+|nuORF;ENSG00000163739|ENST00000395761|CXCL1;ENSG00000163734|ENST00000296026|CXCL3;ENSG00000081041|ENST00000508487|CXCL2;ENST00000511669.1_1_4:74904005-74904475:-|nuORF	ENST00000502974.1_1_4:74904133-74904340:-|nuORF	ENST00000502974.1_1_4:74904133-74904340:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	526.3406372070312	2	526.340375	1050.6662	-0.81474	-0.00042883	-0.34465	-0.0001814	-1.1594	-0.00061023	526.3400987047603	85.909	2.9151	84.418	84.047	86.963	-1.4906					140	57	5	0	0	0	0.36502	1	7444	7444		55.504	9.5523	1	922440			40945	12858	33784	33808	44364	44364					0.14289123596404352
NPRLLRVAL	9	Unmodified	_NPRLLRVAL_					0	0	0		ENST00000502974.1_1_4:74904133-74904340:-|nuORF;ENST00000510048.1_1_4:74964514-74964837:-|nuORF;ENST00000510390.1_1_4:74903808-74904340:-|nuORF;ENST00000509101.1_1_4:74735175-74735707:+|nuORF;ENSG00000163739|ENST00000395761|CXCL1;ENSG00000163734|ENST00000296026|CXCL3;ENSG00000081041|ENST00000508487|CXCL2;ENST00000511669.1_1_4:74904005-74904475:-|nuORF	ENST00000502974.1_1_4:74904133-74904340:-|nuORF	ENST00000502974.1_1_4:74904133-74904340:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	526.3419189453125	2	526.340375	1050.6662	-1.4823	-0.0007802	0.81918	0.00043117	-0.66314	-0.00034904	526.340747965252	87.086	2.9631	84.91	84.431	87.394	-2.1768					160	58	4	0	0	0	0.29717	3	5228	5221;5228;5234		63.306	24.5	1	1191300			40946	12858	33784	33808	44365;44366;44367	44366					0.14289123596404352
NPRLLRVAL	9	Unmodified	_NPRLLRVAL_					0	0	0		ENST00000502974.1_1_4:74904133-74904340:-|nuORF;ENST00000510048.1_1_4:74964514-74964837:-|nuORF;ENST00000510390.1_1_4:74903808-74904340:-|nuORF;ENST00000509101.1_1_4:74735175-74735707:+|nuORF;ENSG00000163739|ENST00000395761|CXCL1;ENSG00000163734|ENST00000296026|CXCL3;ENSG00000081041|ENST00000508487|CXCL2;ENST00000511669.1_1_4:74904005-74904475:-|nuORF	ENST00000502974.1_1_4:74904133-74904340:-|nuORF	ENST00000502974.1_1_4:74904133-74904340:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.3413696289062	2	526.340375	1050.6662	-2.1284	-0.0011203	0.71634	0.00037704	-1.4121	-0.00074324	526.3406344905085	87.536	2.6472	84.909	84.549	87.196	-2.6269					140	52	5	0	0	0	0.53957	1	7452	7452		38.806	1.647	1	1013500			40947	12858	33784	33808	44368	44368					0.14289123596404352
NPRLNILDTL	10	Unmodified	_NPRLNILDTL_					0	0	0		ENST00000496925.5_1_3:184023699-184025408:+|nuORF;nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2	ENST00000496925.5_1_3:184023699-184025408:+|nuORF	ENST00000496925.5_1_3:184023699-184025408:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	584.8377685546875	2	584.837862	1167.66117	-1.3633	-0.00079729	1.48	0.00086559	0.11679	6.8301E-05	584.8386874674171	117.53	0.99216	117.4	117.11	118.1	-0.12869					37	19	3	0	0	0	0.64697	1	11262	11262		36.447	7.2972	1	65392			40948	7521	33785	33809	44369	44369					0.08404774943142002
NPRLNILDTL	10	Unmodified	_NPRLNILDTL_					0	0	0		ENST00000496925.5_1_3:184023699-184025408:+|nuORF;nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2	ENST00000496925.5_1_3:184023699-184025408:+|nuORF	ENST00000496925.5_1_3:184023699-184025408:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	584.837862	1167.66117	-1.4355	-0.00083951	1.4846	0.00086824	0.049111	2.8722E-05	584.8387184769142	118.52	0.94283	117.49	117.19	118.13	-1.0271	0.069606	-0.00022169	NaN	36.447	45	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56629			40949	7521	33785	33809							0.08404774943142002
NPRLNILDTL	10	Unmodified	_NPRLNILDTL_					0	0	0		ENST00000496925.5_1_3:184023699-184025408:+|nuORF;nc|ENSG00000175166|Q13200-2|PSMD2;nc|ENSG00000175166|Q13200-3|PSMD2;ENSG00000175166|ENST00000310118|PSMD2	ENST00000496925.5_1_3:184023699-184025408:+|nuORF	ENST00000496925.5_1_3:184023699-184025408:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	584.837862	1167.66117	-1.901	-0.0011117	1.9261	0.0011265	0.025198	1.4737E-05	584.8390290745638	118.71	0.77958	117.37	117.1	117.88	-1.3444	-0.050978	0.00029481	NaN	36.447	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75014			40950	7521	33785	33809							0.08404774943142002
NPRNFSDNQL	10	Unmodified	_NPRNFSDNQL_					0	0	0		ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159888592-159888742:-|nuORF	ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	602.789794921875	2	602.788901	1203.56325	0.89551	0.0005398	-0.87879	-0.00052973	0.016717	1.0077E-05	602.7882513258564	64.572	1.6495	61.086	60.578	62.227	-3.4854					101	33	4	0	0	0	2.6939E-07	4	4603	4594;4603;4616;4643		213.85	126.15	1	1698500			40951	5969	33786	33810	44370;44371;44372;44373	44371					-0.030390336528625994
NPRNFSDNQL	10	Unmodified	_NPRNFSDNQL_					0	0	0		ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159888592-159888742:-|nuORF	ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	602.788901	1203.56325	-1.3176	-0.00079421	1.6087	0.00096971	0.29116	0.00017551	602.7896444090441	63.856	1.5759	61.111	60.48	62.056	-2.7444	0.012407	0.0017617	NaN	213.85	79	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	321110			40952	5969	33786	33810							-0.030390336528625994
NPRNTEAVTL	10	Unmodified	_NPRNTEAVTL_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.7965698242188	2	557.796195	1113.57784	0.49114	0.00027396	-1.3644	-0.00076105	-0.87324	-0.00048709	557.7953291619052	63.705	1.5015	60.23	59.916	61.417	-3.475					51	30	2	0	0	0	0.43433	1	4485	4485		63.534	1.4264	1	994850			40953	3346	33787	33811	44374	44374					0.02559038495292043
NPRNTEAVTL	10	Unmodified	_NPRNTEAVTL_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	557.796195	1113.57784	-1.2831	-0.00071573	1.2358	0.00068933	-0.047318	-2.6394E-05	557.7967261919645	62.984	1.2087	60.24	59.899	61.108	-2.7444	0.0050801	0.0011919	NaN	63.534	40	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	186530			40954	3346	33787	33811							0.02559038495292043
NPRQPLPASGL	11	Unmodified	_NPRQPLPASGL_					0	0	0		nc|ENSG00000157303|Q96L08-3|SUSD3;nc|ENSG00000157303|Q96L08-2|SUSD3;ENSG00000157303|ENST00000375472|SUSD3	nc|ENSG00000157303|Q96L08-3|SUSD3	nc|ENSG00000157303|Q96L08-3|SUSD3	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.323486328125	2	575.32238	1148.63021	-0.59383	-0.00034164	-0.002505	-1.4412E-06	-0.59633	-0.00034308	575.3223055108174	74.737	1.3559	71.506	71.24	72.596	-3.2308					69	27	5	0	0	0	0.1126	2	5849	5849;5858		94.409	35.627	1	646820			40955	5887	33788	33812	44375;44376	44375					0.061836216289066215
NPRQPLPASGL	11	Unmodified	_NPRQPLPASGL_					0	0	0		nc|ENSG00000157303|Q96L08-3|SUSD3;nc|ENSG00000157303|Q96L08-2|SUSD3;ENSG00000157303|ENST00000375472|SUSD3	nc|ENSG00000157303|Q96L08-3|SUSD3	nc|ENSG00000157303|Q96L08-3|SUSD3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	575.32238	1148.63021	-1.0797	-0.00062116	0.78615	0.00045229	-0.29352	-0.00016887	575.3227980154862	73.716	1.5229	71.316	70.687	72.21	-2.3999	-0.007795	0.00032795	NaN	94.409	72	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161010			40956	5887	33788	33812							0.061836216289066215
NPRQPLPASGL	11	Unmodified	_NPRQPLPASGL_					0	0	0		nc|ENSG00000157303|Q96L08-3|SUSD3;nc|ENSG00000157303|Q96L08-2|SUSD3;ENSG00000157303|ENST00000375472|SUSD3	nc|ENSG00000157303|Q96L08-3|SUSD3	nc|ENSG00000157303|Q96L08-3|SUSD3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	575.32238	1148.63021	-0.81553	-0.00046919	-0.16803	-9.6674E-05	-0.98356	-0.00056587	575.3223656584593	73.637	0.84437	71.15	70.826	71.67	-2.4873	-0.1744	-0.00076997	NaN	94.409	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39107			40957	5887	33788	33812							0.061836216289066215
NPRREPHPAS	10	Unmodified	_NPRREPHPAS_					0	0	0			REV__ENSG00000128271|ENST00000337539|ADORA2A	REV__ENSG00000128271|ENST00000337539|ADORA2A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	580.3206787109375	2	580.799603	1159.58465	-1.2975	-0.00075361	-0.28904	-0.00016788	-1.5866	-0.00092148	580.7993878124781	48.445	0.93417	45.337	45.09	46.024	-3.1077					27	17	2	0	0	0	0.026994	1	2715	2715		40.778	11.629	1	78004	+		40958	18848	33789	33813	44377	44377					0.011243961665059032
NPRRNPRLHHS	11	Unmodified	_NPRRNPRLHHS_					0	0	0		L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|178|3|sense	L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|178|3|sense	L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|178|3|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	461.8065490722656	3	461.920342	1382.7392	-0.78976	-0.00036481	1.7662	0.00081585	0.97646	0.00045105	461.9210305809249	60.224	1.1076	57.454	57.082	58.19	-2.7702					68	20	5	0	0	0	0.025995	1	4453	4453		17.833	0	1	193150			40959	14729	33790	33814	44378	44378					0.06313645371756138
NPRRRRRR	8	Unmodified	_NPRRRRRR_					0	0	0			REV__ENSG00000068024.17,HDAC4,chr2,-,I2.1,239400950,239400977|266|4.07|1|intron	REV__ENSG00000068024.17,HDAC4,chr2,-,I2.1,239400950,239400977|266|4.07|1|intron	MULTI-MSMS	OvCa9_classI_Rep2	2	583.8577880859375	2	583.863738	1165.71292	-4.259	-0.0024867	-4.0104	-0.0023416	-8.2695	-0.0048282	583.8612282732444	154.9	1.2136	154.67	154.34	155.56	-0.22696					82	33	4	0	0	0	0.75661	1	15823	15823		19.36	1.0356	1	148650	+		40960	16845	33791	33815	44379	44379					0.13669420990936487
NPRTGELEGF	10	Unmodified	_NPRTGELEGF_					0	0	0			REV__ENSG00000173276|ENST00000310826|ZBTB21	REV__ENSG00000173276|ENST00000310826|ZBTB21	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.277099609375	2	560.275095	1118.53564	-0.75477	-0.00042288	1.1081	0.00062083	0.3533	0.00019795	560.2756192604105	107.44	1.9511	105.56	105.22	107.17	-1.8785					106	38	4	0	0	0	0.64697	1	9818	9818		36.447	0.82846	1	1542600	+		40961	21764	33792	33816	44380	44380					-0.018889369131102285
NPRTKALVL	9	Unmodified	_NPRTKALVL_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;ENST00000587856.1_1_17:43311355-43318139:+|nuORF;ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1;ENST00000492942.1_1_2:153435413-153463948:+|nuORF;nc|ENSG00000157827|Q96PY5|FMNL2;ENSG00000157827|ENST00000288670|FMNL2	nc|ENSG00000161791|Q8IVF7-2|FMNL3;nc|ENSG00000157827|Q96PY5|FMNL2	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-MSMS	OvCa9_classI_Rep2	2	506.3187561035156	2	506.319109	1010.62366	-0.7007	-0.00035478	0.29142	0.00014755	-0.40928	-0.00020722	506.31921288144724	59.031	1.6985	56.251	55.74	57.438	-2.7801					106	32	5	0	0	0	0.22621	5	4321	4269;4281;4299;4314;4321		71.877	20.542	1	1253400			40962	6138;5913	33793	33817	44381;44382;44383;44384;44385	44385					0.11877728468152782
NPRTKALVL	9	Unmodified	_NPRTKALVL_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3;ENST00000587856.1_1_17:43311355-43318139:+|nuORF;ENSG00000184922|ENST00000331495|FMNL1;nc|ENSG00000184922|O95466-2|FMNL1;nc|ENSG00000184922|O95466-3|FMNL1;ENST00000492942.1_1_2:153435413-153463948:+|nuORF;nc|ENSG00000157827|Q96PY5|FMNL2;ENSG00000157827|ENST00000288670|FMNL2	nc|ENSG00000161791|Q8IVF7-2|FMNL3;nc|ENSG00000157827|Q96PY5|FMNL2	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.3200378417969	2	506.319109	1010.62366	-0.043025	-2.1785E-05	-0.723	-0.00036607	-0.76602	-0.00038785	506.3186788425481	59.763	1.7305	56.371	56.002	57.732	-3.392					100	34	4	0	0	0	0.28934	3	4022	3998;4022;4034		64.207	10.856	1	2002600			40963	6138;5913	33793	33817	44386;44387;44388	44387					0.11877728468152782
NPRTLRYVPE	10	Unmodified	_NPRTLRYVPE_					0	0	0		ENSG00000155542|ENST00000285947|SETD9;nc|ENSG00000155542|Q8NE22-2|SETD9	ENSG00000155542|ENST00000285947|SETD9	ENSG00000155542|ENST00000285947|SETD9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	415.2132263183594	3	415.56305	1243.66732	-0.97858	-0.00040666	-0.55938	-0.00023246	-1.538	-0.00063912	415.89681377426933	43.949	0.29522	40.941	40.842	41.137	-3.0074					6	5	2	0	0	0	0.027233	1	2159	2159		15.333	1.8252	1	11618			40964	5789	33794	33818	44389	44389					0.05523293174655919
NPRTQTHATL	10	Unmodified	_NPRTQTHATL_					0	0	0		ENSG00000188641|ENST00000370192|DPYD;ENST00000460019.1_1_1:98320884-98386532:-|nuORF;nc|ENSG00000188641|Q12882-2|DPYD	ENSG00000188641|ENST00000370192|DPYD	ENSG00000188641|ENST00000370192|DPYD	MULTI-MSMS	OvCa9_classI_Rep4_	4	569.8013305664062	2	569.801811	1137.58907	0.46515	0.00026505	-0.98522	-0.00056138	-0.52007	-0.00029634	569.8012084554681	38.552	1.4381	35.626	35.403	36.841	-2.9264					71	28	4	0	0	0	0.43433	1	1508	1508		63.534	22.107	1	787860			40965	8486	33795	33819	44390	44390					0.02577860589417469
NPRTRRPE	8	Unmodified	_NPRTRRPE_					0	0	0		ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468|AGRN;nc|ENSG00000188157|O00468-2|AGRN	ENSG00000188157|ENST00000379370|AGRN	ENSG00000188157|ENST00000379370|AGRN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.3018798828125	2	513.283589	1024.55262	-0.46758	-0.00024	2.8664	0.0014713	2.3988	0.0012313	513.2849275234793	103.16	1.2016	100.96	100.62	101.82	-2.1994					48	22	3	0	0	0	0.028476	1	9393	9393		24.203	0	1	108870			40966	8454	33796	33820	44391	44391					0.04133028483374801
NPRVKAAAL	9	Unmodified	_NPRVKAAAL_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1;ENST00000477888.1_1_9:94842274-94843223:-|nuORF;nc|ENSG00000090054|O15269-2|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-MSMS	OvCa9_classI_Rep2	2	470.2900085449219	2	470.290351	938.566149	-0.39525	-0.00018588	0.15045	7.0753E-05	-0.2448	-0.00011513	470.2902710292615	46.08	1.59	43.371	42.998	44.588	-2.7097					64	31	3	0	0	0	0.17908	4	2729	2717;2722;2729;2735		79.939	24.686	1	432530			40967	1831	33797	33821	44392;44393;44394;44395	44394					0.09440886262598269
NPRVKAAAL	9	Unmodified	_NPRVKAAAL_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1;ENST00000477888.1_1_9:94842274-94843223:-|nuORF;nc|ENSG00000090054|O15269-2|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.2908630371094	2	470.290351	938.566149	0.052113	2.4508E-05	-0.67944	-0.00031953	-0.62733	-0.00029503	470.28999558575936	46.445	1.893	43.372	43.03	44.923	-3.0724					85	36	4	0	0	0	0.22961	2	2437	2437;2451		71.296	13.504	1	1576300			40968	1831	33797	33821	44396;44397	44396					0.09440886262598269
NPRWRRWLLMR	11	Unmodified	_NPRWRRWLLMR_					0	0	0		ENST00000579248.5_2_18:47017953-47018809:-|nuORF	ENST00000579248.5_2_18:47017953-47018809:-|nuORF	ENST00000579248.5_2_18:47017953-47018809:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.7442626953125	3	528.633256	1582.87794	1.6087	0.00085043	-3.6404	-0.0019245	-2.0317	-0.001074	528.9655819023476	106.16	1.5361	106.16	105.31	106.85	0					62	34	2	0	0	0	0.026383	1	11980	11980		12.957	11.434	1	236410			40969	13978	33798	33822	44398	44398					0.10981472015691907
NPSARLTAL	9	Unmodified	_NPSARLTAL_					0	0	0		ENSG00000139567|ENST00000388922|ACVRL1;ENSG00000115170|ENST00000434821|ACVR1	ENSG00000139567|ENST00000388922|ACVRL1	ENSG00000139567|ENST00000388922|ACVRL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.7735900878906	2	471.771991	941.529429	-0.17183	-8.1063E-05	0.0236	1.1134E-05	-0.14823	-6.9929E-05	471.77207588102766	73.444	1.1934	70.048	69.736	70.93	-3.3961					60	24	4	0	0	0	0.084918	1	5692	5692		101.25	16.092	1	844830			40970	4783	33799	33823	44399	44399					0.056325896460293734
NPSARLTAL	9	Unmodified	_NPSARLTAL_					0	0	0		ENSG00000139567|ENST00000388922|ACVRL1;ENSG00000115170|ENST00000434821|ACVR1	ENSG00000139567|ENST00000388922|ACVRL1	ENSG00000139567|ENST00000388922|ACVRL1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	471.771991	941.529429	0.13127	6.1931E-05	-1.0466	-0.00049376	-0.91532	-0.00043182	471.77136740287557	72.344	2.0361	69.837	69.226	71.262	-2.5071	-0.10564	-0.00019916	NaN	101.25	74	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226830			40971	4783	33799	33823							0.056325896460293734
NPSAVPLSSA	10	Unmodified	_NPSAVPLSSA_					0	0	0			REV__ENST00000216181.9_1_22:36677793-36678213:-|nuORF	REV__ENST00000216181.9_1_22:36677793-36678213:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.7720031738281	2	471.748182	941.481811	-0.10125	-4.7765E-05	-0.21678	-0.00010227	-0.31803	-0.00015003	471.7479900415982	73.544	1.1453	70.148	69.881	71.027	-3.3961					43	23	3	0	0	0	0.02661	1	5704	5704		49.442	28.96	1	385190	+		40972	23719	33800	33824	44400	44400					0.008728906551937143
NPSAVPLSSA	10	Unmodified	_NPSAVPLSSA_					0	0	0			REV__ENST00000216181.9_1_22:36677793-36678213:-|nuORF	REV__ENST00000216181.9_1_22:36677793-36678213:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	471.748182	941.481811	0.058773	2.7726E-05	0.21832	0.00010299	0.27709	0.00013072	471.74813660069594	72.573	1.0425	70.173	69.697	70.74	-2.3999	0.042975	4.588E-05	NaN	32.812	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72887	+		40973	23719	33800	33824							0.008728906551937143
NPSAWPAL	8	Unmodified	_NPSAWPAL_					0	0	0		nc|ENSG00000100354|Q9UPQ9-1|TNRC6B;TNRC6B|p.Q1753Rfs*11|1|0.24|ENSG00000100354|chr22:40322995-40322995|C/-|frameshift_variant;ENSG00000100354|ENST00000454349|TNRC6B	nc|ENSG00000100354|Q9UPQ9-1|TNRC6B	nc|ENSG00000100354|Q9UPQ9-1|TNRC6B	MULTI-MSMS	OvCa9_classI_Rep3	3	428.2229309082031	2	428.221603	854.428653	2.1294	0.00091187	1.9024	0.00081464	4.0318	0.0017265	428.2222618775492	62.473	1.7234	59.439	58.937	60.66	-3.0339					58	35	3	0	0	0	0.66704	1	2237	2237		50.025	0.81375	1	42700			40974	2055	33801	33825	44401	44401					-0.004384423368151147
NPSMKEAQYM	10	Unmodified	_NPSMKEAQYM_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__nc|ENSG00000155657|Q8WZ42-6|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	599.30224609375	2	599.765191	1197.51583	0.56921	0.00034139	3.4604	0.0020754	4.0296	0.0024168	599.7674301677823	162.37	0.30113	162.37	162.18	162.48	0					7	5	2	0	0	0	0.026994	1	19032	19032		32.812	14.488	1	44425	+		40975	28943	33802	33826	44402	44402					-0.0750277223971807
NPSNGELH	8	Unmodified	_NPSNGELH_					0	0	0		ENSG00000104369|ENST00000342232|JPH1	ENSG00000104369|ENST00000342232|JPH1	ENSG00000104369|ENST00000342232|JPH1	MULTI-MSMS	OvCa9_classI_Rep4_	4	434.2023010253906	2	434.201399	866.388245	1.6432	0.00071349	2.5973	0.0011278	4.2405	0.0018412	434.20235699405873	129.11	2.4152	127.66	126.27	128.68	-1.4565					81	47	4	0	0	0	0.74229	1	12390	12390		30.504	3.7075	1	260680			40976	2372	33803	33827	44403	44403					-0.05029408727239115
NPSPAQGRT	9	Unmodified	_NPSPAQGRT_					0	0	0		nc|ENSG00000111799|Q99715-4|COL12A1;ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-2|COL12A1	nc|ENSG00000111799|Q99715-4|COL12A1	nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-MSMS	OvCa99_classI_Rep5	1	464.2392272949219	2	464.235773	926.456993	2.5174	0.0011687	3.3962	0.0015766	5.9135	0.0027453	464.23753788717266	80.394	0.55373	80.394	80.148	80.702	0					32	12	3	0	0	0	0.28934	1	8242	8242		64.207	5.4253	1	1083300			40977	2854	33804	33828	44404	44404					-0.009177444275223934
NPSSVPSSPK	10	Unmodified	_NPSSVPSSPK_					0	0	0			REV__nc|ENSG00000136155|O95171-3|SCEL	REV__nc|ENSG00000136155|O95171-3|SCEL	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.3304443359375	2	500.258914	998.503274	-0.2651	-0.00013262	-1.3049	-0.0006528	-1.57	-0.00078542	500.25825052619444	58.722	0.57134	58.722	58.28	58.852	0					20	13	3	0	0	0	0.027001	1	5027	5027		21.686	13.995	1	486940	+		40978	19363	33805	33829	44405	44405					0.003962756839086978
NPTKGKAL	8	Unmodified	_NPTKGKAL_					0	0	0		tr|A0A553SQ32|A0A553SQ32_NIACIMalatedehydrogenaseOS=NialliacirculansOX=1397GN=mdhPE=3SV=1	tr|A0A553SQ32|A0A553SQ32_NIACIMalatedehydrogenaseOS=NialliacirculansOX=1397GN=mdhPE=3SV=1	tr|A0A553SQ32|A0A553SQ32_NIACIMalatedehydrogenaseOS=NialliacirculansOX=1397GN=mdhPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.24102783203125	2	414.750527	827.486502	-1.9061	-0.00079056	1.8134	0.0007521	-0.09273	-3.846E-05	414.7512509457744	49.687	0.77549	46.545	46.251	47.026	-3.1416					19	14	2	0	0	0	0.028476	1	2783	2783		44.117	12.162	1	15799			40979	34113	33806	33830	44406	44406					0.06585819588610775
NPTLQCRRID	10	Unmodified	_NPTLQCRRID_					0	0	0			REV__ENST00000465131.5_1_2:239079179-239082320:-|nuORF	REV__ENST00000465131.5_1_2:239079179-239082320:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	608.2982177734375	2	608.316771	1214.61899	0.4593	0.0002794	2.5916	0.0015765	3.0509	0.0018559	608.8193298832394	59.122	0.15113	55.73	55.604	55.755	-3.392					4	2	2	0	0	0	0.026676	1	3926	3926		33.922	4.7516	1	9133.4	+		40980	19067	33807	33831	44407	44407					0.020264762630858968
NPTMLPVDD	9	Unmodified	_NPTMLPVDD_					0	0	0			REV__nc|ENSG00000169760|Q8N2Q7-2|NLGN1	REV__nc|ENSG00000169760|Q8N2Q7-2|NLGN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.8299560546875	2	501.23405	1000.45355	-0.40115	-0.00020107	3.2698	0.001639	2.8687	0.0014379	501.2354949804886	75.107	0.67465	71.876	71.726	72.4	-3.2308					20	13	2	0	0	0	0.027462	1	5911	5911		30.504	8.5438	1	42201	+		40981	21481	33808	33832	44408	44408					-0.04666175316401677
NPTQQPICAFP	11	Unmodified	_NPTQQPICAFP_					0	0	0			REV__ENST00000526104.5_2_11:208097-208547:+|nuORF	REV__ENST00000526104.5_2_11:208097-208547:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	608.2965698242188	2	608.294973	1214.57539	3.6539	0.0022227	-0.80473	-0.00048951	2.8492	0.0017331	608.2942855637167	59.026	3.3501	55.911	55.036	58.386	-3.1147					203	93	3	0	0	0	0.71191	1	1881	1881		25.574	0	1	283460	+		40982	27127	33809	33833	44409	44409					-0.023311332340426816
NPTQSGYL	8	Unmodified	_NPTQSGYL_					0	0	0			REV__ENST00000494579.1_1_5:141974857-142077603:-|nuORF	REV__ENST00000494579.1_1_5:141974857-142077603:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	440.2135925292969	2	440.213975	878.413397	0.50822	0.00022373	-0.94874	-0.00041765	-0.44052	-0.00019393	440.21340227627337	114	1.6768	112.55	112.2	113.87	-1.4461					63	32	3	0	0	0	0.74754	1	10570	10570		27.882	0	1	199710	+		40983	18158	33810	33834	44410	44410					-0.030673539246663495
NPTSAQGRFTH	11	Unmodified	_NPTSAQGRFTH_					0	0	0		ENST00000572113.1_1_16:21272500-21273498:-|nuORF	ENST00000572113.1_1_16:21272500-21273498:-|nuORF	ENST00000572113.1_1_16:21272500-21273498:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	608.2960815429688	2	608.296893	1214.57923	3.6539	0.0022227	-3.9609	-0.0024094	-0.30703	-0.00018677	608.2942855637167	59.026	3.3501	55.911	55.036	58.386	-3.1147					203	93	3	0	0	0	0.7046	1	1838	1838		28.081	1.3886	1	283460			40984	13908	33811	33835	44411	44411					-0.019473274159508946
NPVCLKPK	8	Unmodified	_NPVCLKPK_					0	0	0		nc|ENSG00000178125|Q7Z4L9|PPP1R42;nc|ENSG00000178125|Q7Z4L9-2|PPP1R42;ENSG00000178125|ENST00000685739|PPP1R42	nc|ENSG00000178125|Q7Z4L9|PPP1R42	nc|ENSG00000178125|Q7Z4L9|PPP1R42	MULTI-MSMS	OvCa9_classI_Rep2	2	449.7640686035156	2	449.762581	897.510608	5.9884	0.0026934	-1.6684	-0.00075039	4.32	0.001943	449.7616579337906	25.669	0.8354	22.96	22.778	23.613	-2.7097					39	19	3	0	0	0	0.75915	1	296	296		20.482	4.8456	1	137640			40985	15194	33812	33836	44412	44412					0.057753367506279574
NPVGLDGR	8	Unmodified	_NPVGLDGR_					0	0	0			REV__ENSG00000072840|ENST00000264956|EVC	REV__ENSG00000072840|ENST00000264956|EVC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	415.2132263183594	2	414.222134	826.429715	-0.78695	-0.00032597	1.5419	0.00063869	0.75495	0.00031272	414.22271970626804	44.222	0.65553	41.214	40.989	41.645	-3.0074					21	12	3	0	0	0	0.028476	1	2159	2159		29.15	11.785	1	30079	+		40986	16925	33813	33837	44413	44413					0.009557720320913177
NPVGPHLRR	9	Unmodified	_NPVGPHLRR_					0	0	0			REV__ENST00000355852.6_1_3:51991801-51992080:-|nuORF	REV__ENST00000355852.6_1_3:51991801-51992080:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3029174804688	2	523.304324	1044.5941	-0.69596	-0.0003642	-0.72937	-0.00038168	-1.4253	-0.00074588	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.6653	1	13737	13737		24.203	2.2429	1	130240	+		40987	24756	33814	33838	44414	44414					0.0735820924271593
NPVHNGHAL	9	Unmodified	_NPVHNGHAL_					0	0	0		nc|ENSG00000198682|O95340|PAPSS2;ENSG00000198682|ENST00000456849|PAPSS2;ENSG00000138801|ENST00000265174|PAPSS1	nc|ENSG00000198682|O95340|PAPSS2;ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.74652099609375	2	479.746308	957.478063	1.0484	0.00050295	-1.1219	-0.00053824	-0.073554	-3.5287E-05	479.74559339810526	37.013	0.94735	34.121	33.894	34.841	-2.8925					37	18	3	0	0	0	0.19716	1	1331	1331		76.847	26.822	1	104720			40988	4734;15259	33815	33839	44415	44415					-0.002377343280045352
NPVPPTQRLQ	10	Unmodified	_NPVPPTQRLQ_					0	0	0			REV__tr|A0A553SSW3|A0A553SSW3_NIACIFormylglycine-generatingenzymefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_03920PE=4SV=1	REV__tr|A0A553SSW3|A0A553SSW3_NIACIFormylglycine-generatingenzymefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_03920PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	575.3252563476562	2	575.32238	1148.63021	1.52	0.00087449	3.8392	0.0022088	5.3592	0.0030833	575.3244526025719	134.93	1.1264	134.93	134.61	135.73	0					61	24	4	0	0	0	0.6104	1	15726	15726		40.778	4.3314	1	1496800	+		40989	30886	33816	33840	44416	44416					0.061836216289066215
NPVVYFLP	8	Unmodified	_NPVVYFLP_					0	0	0		chr11:112091514-112094805|101|16.19|0.97|4.06|+|0|TE_info:L2a,L2a_dup117213,L2,LINE,donor,+,112091161,112091514|None,SDHD|2	chr11:112091514-112094805|101|16.19|0.97|4.06|+|0|TE_info:L2a,L2a_dup117213,L2,LINE,donor,+,112091161,112091514|None,SDHD|2	chr11:112091514-112094805|101|16.19|0.97|4.06|+|0|TE_info:L2a,L2a_dup117213,L2,LINE,donor,+,112091161,112091514|None,SDHD|2	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.301513671875	2	474.763104	947.511654	0.85995	0.00040827	1.3513	0.00064156	2.2113	0.0010498	474.7635506714732	151.76	0.80637	151.76	151.45	152.26	0					30	16	3	0	0	0	0.028476	1	17775	17775		44.531	9.3304	1	238970			40990	282	33817	33841	44417	44417					0.03579874391186877
NPWKREVKLL	10	Unmodified	_NPWKREVKLL_					0	0	0		ENSG00000101474|ENST00000217456|APMAP;nc|ENSG00000101474|Q9HDC9-2|APMAP	ENSG00000101474|ENST00000217456|APMAP	ENSG00000101474|ENST00000217456|APMAP	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8829956054688	2	641.885147	1281.75574	-6.0651	-0.0038931	2.0438	0.0013119	-4.0213	-0.0025812	641.8862554433606	156.14	0.75443	155.06	154.74	155.49	-1.073					34	19	2	0	0	0	0.81992	1	13460	13460		16.473	0.83134	1	21909			40991	2183	33818	33842	44418	44418					0.12613333485114708
NQAAALFRGH	10	Unmodified	_NQAAALFRGH_					0	0	0			REV__nc|ENSG00000167110|Q08379|GOLGA2	REV__nc|ENSG00000167110|Q08379|GOLGA2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.3262939453125	2	542.785964	1083.55738	-1.5112	-0.00082028	0.22634	0.00012285	-1.2849	-0.00069743	542.7861526450918	65.845	0.34132	62.359	62.227	62.569	-3.4854					11	6	2	0	0	0	0.026915	1	4753	4753		20.947	0	1	23416	+		40992	21253	33819	33843	44419	44419					0.0189391262611025
NQADKEPTP	9	Unmodified	_NQADKEPTP_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.8257141113281	2	500.240721	998.466889	-1.0956	-0.00054807	0.92777	0.00046411	-0.16784	-8.3959E-05	500.2410494407012	65.681	0.51614	65.681	65.467	65.984	0					28	12	3	0	0	0	0.027462	1	6076	6076		23.523	0	1	2422500	+		40993	19381	33820	33844	44420	44420					-0.0324060121280354
NQADKEPTP	9	Unmodified	_NQADKEPTP_					0	0	0			REV__ENSG00000136367|ENST00000419474|ZFHX2	REV__ENSG00000136367|ENST00000419474|ZFHX2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	500.240721	998.466889	-1.0033	-0.0005019	8.2307	0.0041173	7.2274	0.0036154	500.2428114662666	69.397	0.14819	65.916	65.811	65.96	-3.4812	0.11733	0.0010403	NaN	30.318	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9821.4	+		40994	19381	33820	33844							-0.0324060121280354
NQAFLEMAY	9	Unmodified	_NQAFLEMAY_					0	0	0		ENSG00000203867|ENST00000369519|RBM20	ENSG00000203867|ENST00000369519|RBM20	ENSG00000203867|ENST00000369519|RBM20	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.7998657226562	2	543.749867	1085.48518	-0.13338	-7.2527E-05	-0.77431	-0.00042103	-0.90769	-0.00049356	544.2514525857275	51.247	0.38396	51.247	51.12	51.504	0					11	8	2	0	0	0	0.027462	1	3935	3935		31.955	7.7521	1	111600			40995	8938	33821	33845	44421	44421					-0.05414182562458336
NQAILSQLY	9	Unmodified	_NQAILSQLY_					0	0	0		nc|ENSG00000107105|Q12926-2|ELAVL2;ENSG00000107105|ENST00000397312|ELAVL2	nc|ENSG00000107105|Q12926-2|ELAVL2	nc|ENSG00000107105|Q12926-2|ELAVL2	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.8058471679688	2	525.284931	1048.55531	0.46512	0.00024432	2.1304	0.001119	2.5955	0.0013634	525.2856332176098	92.509	0.63149	91.341	90.971	91.603	-1.168					18	11	2	0	0	0	0.027295	1	8212	8212		84.916	8.1414	1	21482			40996	2587	33822	33846	44422	44422					0.03297439097673305
NQALASAY	8	Unmodified	_NQALASAY_					0	0	0			REV__ENSG00000143126|ENST00000271332|CELSR2	REV__ENSG00000143126|ENST00000271332|CELSR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.1976318359375	2	419.208692	836.402832	0.79027	0.00033129	3.9033	0.0016363	4.6935	0.0019676	419.2101968520473	45.422	0.33865	45.422	45.202	45.54	0					14	7	3	0	0	0	0.028476	1	3154	3154		31.955	6.5047	1	64661	+		40997	19817	33823	33847	44423	44423					-0.021913365790965145
NQALRLIEM	9	Unmodified	_NQALRLIEM_					0	0	0		nc|ENSG00000154240|Q8N8E3-2|CEP112	nc|ENSG00000154240|Q8N8E3-2|CEP112	nc|ENSG00000154240|Q8N8E3-2|CEP112	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.3004760742188	2	544.300059	1086.58556	-1.2125	-0.00065995	1.1524	0.00062725	-0.060063	-3.2692E-05	544.3005382052795	93.345	0.9722	90.838	90.513	91.485	-2.5072					59	20	4	0	0	0	0.33652	1	8130	8130		58.782	5.4305	1	699340			40998	15106	33824	33848	44424	44424					0.045734744911896996
NQAPFPLQV	9	Unmodified	_NQAPFPLQV_					0	0	0		ENST00000471413.1_1_1:156212316-156212582:+|nuORF	ENST00000471413.1_1_1:156212316-156212582:+|nuORF	ENST00000471413.1_1_1:156212316-156212582:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.27252197265625	2	507.274367	1012.53418	1.4708	0.00074611	-1.555	-0.0007888	-0.084153	-4.2689E-05	507.2736608620184	89.045	1.331	87.677	87.086	88.417	-1.3676					76	26	4	0	0	0	0.31747	1	7860	7860		60.972	5.4677	1	457450			40999	12382	33825	33849	44425	44425					0.028414737888056152
NQASRVAVVN	10	Unmodified	_NQASRVAVVN_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.3284301757812	2	529.291079	1056.56761	0.36842	0.000195	0.06501	3.4409E-05	0.43343	0.00022941	529.2909577674405	129.8	1.4343	128.69	128.09	129.53	-1.1121					69	28	3	0	0	0	0.026956	1	10211	10211		34.173	0	1	34340			41000	3083	33826	33850	44426	44426					0.041584755607118495
NQDAQNKSP	9	Unmodified	_NQDAQNKSP_					0	0	0		ENSG00000155026|ENST00000404406|RSPH10B;ENSG00000169402|ENST00000404077|RSPH10B2	ENSG00000155026|ENST00000404406|RSPH10B	ENSG00000155026|ENST00000404406|RSPH10B	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.27520751953125	2	501.23597	1000.45739	2.3234	0.0011646	-3.7807	-0.001895	-1.4573	-0.00073046	501.2340704483743	76.073	1.6705	76.073	75.087	76.757	0					72	41	2	0	0	0	0.027452	1	7465	7465		41.427	0	1	3580000			41001	5765	33827	33851	44427	44427					-0.04282369498332628
NQDGRVILS	9	Unmodified	_NQDGRVILS_					0	0	0		nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9-3|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000256263|A8MPP1|DDX11L8;nc|ENSG00000013573|Q96FC9|DDX11;ENST00000542661.1_1_12:31249848-31255462:+|nuORF;ENST00000539049.5_1_12:31242373-31253526:+|nuORF;ENST00000435753.6_1_12:31242373-31254792:+|nuORF;ENST00000539757.1_1_12:9440801-9462940:+|nuORF;ENST00000536265.5_1_12:31242773-31256767:+|nuORF	nc|ENSG00000214826|Q92771|DDX12P;ENST00000536265.5_1_12:31242773-31256767:+|nuORF	nc|ENSG00000214826|Q92771|DDX12P	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.794921875	2	501.272355	1000.53016	1.4041	0.00070386	-1.499	-0.00075142	-0.094885	-4.7563E-05	501.27175373877117	83.704	0.50317	83.704	83.377	83.88	0					16	11	3	0	0	0	0.027441	1	8707	8707		40.778	1.5253	1	148700			41002	15313;13388	33828	33852	44428	44428					0.02991384295091848
NQDLLAKSF	9	Unmodified	_NQDLLAKSF_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.788818359375	2	518.277106	1034.53966	-1.0239	-0.00053064	0.67339	0.000349	-0.35046	-0.00018164	518.2770296216017	80.566	1.0768	77.855	77.466	78.543	-2.7106					27	19	2	0	0	0	0.027462	1	6633	6633		34.173	0	1	184080	+		41003	22747	33829	33853	44429	44429					0.023771525806068894
NQDSSGHF	8	Unmodified	_NQDSSGHF_					0	0	0		ENSG00000124827|ENST00000379491|GCM2	ENSG00000124827|ENST00000379491|GCM2	ENSG00000124827|ENST00000379491|GCM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	446.2396545410156	2	446.183206	890.351859	0.36539	0.00016303	1.89	0.00084327	2.2553	0.0010063	446.1844529542619	54.264	0.20623	54.264	54.172	54.378	0					5	4	2	0	0	0	0.028476	1	4367	4367		33.516	1.5607	1	81578			41004	3684	33830	33854	44430	44430					-0.0977028562393798
NQEDFSNRRI	10	Unmodified	_NQEDFSNRRI_					0	0	0			REV__nc|ENSG00000211799|A0A0A6YYK7|TRAV19	REV__nc|ENSG00000211799|A0A0A6YYK7|TRAV19	MULTI-SECPEP	OvCa99_classI_Rep5	1	427.7129821777344	3	426.877697	1277.61126	0.47402	0.00020235	0.1457	6.2198E-05	0.61973	0.00026455	426.8776727410233	46.153	0.78461	46.153	45.934	46.719	0					23	17	2	0	0	0	0.026949	1	3211	3211		28.577	6.7963	1	163950	+		41005	29118	33831	33855	44431	44431					-0.016439597328144373
NQELAKDLGL	10	Unmodified	_NQELAKDLGL_					0	0	0		tr|A0A553SHS5|A0A553SHS5_NIACIProteinadenylyltransferaseSelOOS=NialliacirculansOX=1397GN=selOPE=3SV=1	tr|A0A553SHS5|A0A553SHS5_NIACIProteinadenylyltransferaseSelOOS=NialliacirculansOX=1397GN=selOPE=3SV=1	tr|A0A553SHS5|A0A553SHS5_NIACIProteinadenylyltransferaseSelOOS=NialliacirculansOX=1397GN=selOPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.3019409179688	2	550.800946	1099.58734	-0.59902	-0.00032994	-2.5568	-0.0014083	-3.1558	-0.0017382	551.303033370135	63.418	0.38688	59.943	59.625	60.012	-3.475					12	7	2	0	0	0	0.026782	1	4461	4461		30.318	2.4355	1	91287			41006	33305	33832	33856	44432	44432					0.041528067808030755
NQEPGSLPLL	10	Unmodified	_NQEPGSLPLL_					0	0	0		ENST00000257897.7_2_12:58119581-58120334:-|nuORF	ENST00000257897.7_2_12:58119581-58120334:-|nuORF	ENST00000257897.7_2_12:58119581-58120334:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	534.2928466796875	2	534.290214	1066.56587	2.5429	0.0013586	-0.12829	-6.8546E-05	2.4146	0.0012901	534.2899900349704	87.815	0.66553	87.815	87.505	88.171	0					41	15	4	0	0	0	0.50999	1	9317	9317		52.937	6.4799	1	1612300			41007	9830	33833	33857	44433	44433					0.035254217521242026
NQEQLKKV	8	Unmodified	_NQEQLKKV_					0	0	0			REV__tr|A0A7D6VU59|A0A7D6VU59_9CLOTThymidylatesynthaseOS=ClostridiumintestinaleOX=36845GN=thyAPE=3SV=1	REV__tr|A0A7D6VU59|A0A7D6VU59_9CLOTThymidylatesynthaseOS=ClostridiumintestinaleOX=36845GN=thyAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.7842102050781	2	493.785099	985.555644	-0.67825	-0.00033491	0.91819	0.00045339	0.23994	0.00011848	493.7852147836093	92.958	0.95043	90.45	90.262	91.212	-2.5072					47	19	3	0	0	0	0.68714	1	8098	8098		45.952	0	1	387210	+		41008	31653	33834	33858	44434	44434					0.06228858817519267
NQESHELHV	9	Unmodified	_NQESHELHV_					0	0	0			REV__ENSG00000167257|ENST00000300650|RNF214	REV__ENSG00000167257|ENST00000300650|RNF214	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.8131103515625	2	546.757069	1091.49959	0.34567	0.000189	-3.6193	-0.0019789	-3.2736	-0.0017899	547.2567064761321	72.556	0.43042	72.556	72.333	72.764	0					20	10	3	0	0	0	0.027462	1	7090	7090		24.203	0	1	325070	+		41009	21264	33835	33859	44435	44435					-0.042503940899450754
NQFIKRVLE	9	Unmodified	_NQFIKRVLE_					0	0	0			REV__GRXCR1|p.K213Ffs*4|1|0.18|ENSG00000215203|chr4:43020361-43020364|AGAA/-|frameshift_variant	REV__GRXCR1|p.K213Ffs*4|1|0.18|ENSG00000215203|chr4:43020361-43020364|AGAA/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	573.8417358398438	2	573.835123	1145.65569	2.0201	0.0011592	3.013	0.001729	5.0331	0.0028882	573.8368491769907	76.367	1.3222	76.367	75.639	76.961	0					68	32	3	0	0	0	0.53957	1	7640	7640		38.806	2.3594	1	1134300	+		41010	23314	33836	33860	44436	44436					0.08869096151329359
NQFKNAVSI	9	Unmodified	_NQFKNAVSI_					0	0	0			REV__tr|A0A7D7A0I9|A0A7D7A0I9_9CLOTYhgE/Pipdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00290PE=4SV=1	REV__tr|A0A7D7A0I9|A0A7D7A0I9_9CLOTYhgE/Pipdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00290PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.7783508300781	2	510.777274	1019.53999	-1.4221	-0.00072639	0.89562	0.00045746	-0.52651	-0.00026893	510.7775735198115	72.878	1.448	69.482	69.156	70.604	-3.3961					73	29	3	0	0	0	0.14998	3	5626	5615;5626;5638		84.916	16.301	1	781790	+		41011	32448	33837	33861	44437;44438;44439	44438					0.031005723004682295
NQFKNAVSI	9	Unmodified	_NQFKNAVSI_					0	0	0			REV__tr|A0A7D7A0I9|A0A7D7A0I9_9CLOTYhgE/Pipdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00290PE=4SV=1	REV__tr|A0A7D7A0I9|A0A7D7A0I9_9CLOTYhgE/Pipdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00290PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	510.777274	1019.53999	0.34457	0.000176	-0.58102	-0.00029677	-0.23646	-0.00012078	510.77690702680087	71.855	1.9324	69.347	68.805	70.737	-2.5071	-0.06736	-0.00098376	NaN	84.916	84	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215460	+		41012	32448	33837	33861							0.031005723004682295
NQFKNAVSI	9	Unmodified	_NQFKNAVSI_					0	0	0			REV__tr|A0A7D7A0I9|A0A7D7A0I9_9CLOTYhgE/Pipdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00290PE=4SV=1	REV__tr|A0A7D7A0I9|A0A7D7A0I9_9CLOTYhgE/Pipdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00290PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	510.777274	1019.53999	-1.4221	-0.00072639	0.89562	0.00045746	-0.52651	-0.00026893	510.7775735198115	72.878	1.448	69.482	69.156	70.604	-3.3961	0.06736	0.00052472	NaN	84.916	73	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	781790	+		41013	32448	33837	33861							0.031005723004682295
NQFLHPTT	8	Unmodified	_NQFLHPTT_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|93|2|sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|93|2|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.7803955078125	2	479.243067	956.47158	-0.7707	-0.00036935	4.2004	0.002013	3.4297	0.0016437	479.2449735225751	55.43	1.2675	52.135	51.803	53.07	-3.2944					44	24	2	0	0	0	0.028476	1	3507	3507		47.916	7.8574	1	351990	+		41014	28489	33838	33862	44440	44440					-0.00839672279403203
NQFLTIFIL	9	Unmodified	_NQFLTIFIL_					0	0	0		PRAMEF17|p.H326Dfs*17|1|0.05|ENSG00000204479|chr1:13392051-13392052|-/TGACATGAGAAAA|frameshift_variant;ENSG00000204479|ENST00000376098|PRAMEF17	PRAMEF17|p.H326Dfs*17|1|0.05|ENSG00000204479|chr1:13392051-13392052|-/TGACATGAGAAAA|frameshift_variant	PRAMEF17|p.H326Dfs*17|1|0.05|ENSG00000204479|chr1:13392051-13392052|-/TGACATGAGAAAA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.3240356445312	2	554.823692	1107.63283	0.67214	0.00037292	3.6655	0.0020337	4.3376	0.0024066	554.8255213881719	45.593	0.16968	45.593	45.454	45.624	0					5	3	2	0	0	0	0.027433	1	3166	3166		60.972	0	1	1058500			41015	8990	33839	33863	44441	44441					0.0833207703383323
NQFPGFKEV	9	Unmodified	_NQFPGFKEV_					0	0	0		ENST00000407763.2_1_6:149433147-149433330:-|nuORF;ENSG00000125870|ENST00000246071|SNRPB2;ENSG00000077312|ENST00000243563|SNRPA	ENST00000407763.2_1_6:149433147-149433330:-|nuORF	ENST00000407763.2_1_6:149433147-149433330:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	533.2734985351562	2	533.271824	1064.5291	1.8272	0.00097439	-0.12778	-6.8143E-05	1.6994	0.00090625	533.2714892663305	87.309	1.4946	87.309	87.013	88.508	0					81	35	4	0	0	0	0.070405	1	9232	9232		107.01	21.847	1	12003000			41016	1569	33840	33864	44442	44442					-0.0005883007379452465
NQFPGFKEV	9	Unmodified	_NQFPGFKEV_					0	0	0		ENST00000407763.2_1_6:149433147-149433330:-|nuORF;ENSG00000125870|ENST00000246071|SNRPB2;ENSG00000077312|ENST00000243563|SNRPA	ENST00000407763.2_1_6:149433147-149433330:-|nuORF	ENST00000407763.2_1_6:149433147-149433330:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	533.2722778320312	2	533.271824	1064.5291	0.11177	5.9603E-05	-0.25792	-0.00013754	-0.14615	-7.7938E-05	533.2716176938202	89.052	1.4924	86.921	86.461	87.954	-2.1309					93	29	5	0	0	0	0.10502	2	5450	5450;5456		95.815	30.35	1	855140			41017	1569	33840	33864	44443;44444	44443					-0.0005883007379452465
NQFPGFKEV	9	Unmodified	_NQFPGFKEV_					0	0	0		ENST00000407763.2_1_6:149433147-149433330:-|nuORF;ENSG00000125870|ENST00000246071|SNRPB2;ENSG00000077312|ENST00000243563|SNRPA	ENST00000407763.2_1_6:149433147-149433330:-|nuORF	ENST00000407763.2_1_6:149433147-149433330:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.2728271484375	2	533.271824	1064.5291	-0.42561	-0.00022696	0.13841	7.3812E-05	-0.28719	-0.00015315	533.2717883668963	89.499	1.1936	86.924	86.608	87.801	-2.575					74	23	4	0	0	0	0.03923	2	7684	7684;7696		127.46	45.221	1	725190			41018	1569	33840	33864	44445;44446	44445					-0.0005883007379452465
NQFQRDNAR	9	Unmodified	_NQFQRDNAR_					0	0	0		nc|ENSG00000148498|Q8TEW0-9|PARD3;nc|ENSG00000148498|Q8TEW0-10|PARD3;nc|ENSG00000148498|Q8TEW0-8|PARD3;nc|ENSG00000148498|Q8TEW0-7|PARD3;nc|ENSG00000148498|Q8TEW0-6|PARD3;nc|ENSG00000148498|Q8TEW0-4|PARD3;nc|ENSG00000148498|Q8TEW0-11|PARD3;ENSG00000148498|ENST00000374788|PARD3;nc|ENSG00000148498|Q8TEW0|PARD3;PARD3|p.G521Ffs*4|1|0.1|ENSG00000148498|chr10:34374960-34374981|CAACTTCCTCTTGGGATTTGCC/-|frameshift_variant	nc|ENSG00000148498|Q8TEW0-9|PARD3	nc|ENSG00000148498|Q8TEW0-9|PARD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.2615966796875	2	574.78141	1147.54827	-1.4027	-0.00080624	0.96809	0.00055644	-0.4346	-0.0002498	574.7822365565906	43.701	0.60202	43.701	43.478	44.08	0					21	13	2	0	0	0	0.027462	1	2921	2921		20.947	0	1	175100			41019	5416	33841	33865	44447	44447					-0.01960480730213021
NQFWSLDL	8	Unmodified	_NQFWSLDL_					0	0	0			REV__ENST00000368222.7_1_1:156675302-156675365:-|nuORF	REV__ENST00000368222.7_1_1:156675302-156675365:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.8142395019531	2	511.750724	1021.4869	-0.461	-0.00023592	-0.24258	-0.00012414	-0.70359	-0.00036006	511.750692800667	39.398	1.1833	39.398	38.486	39.669	0					45	26	3	0	0	0	0.028476	1	2296	2296		24.203	0	1	151910	+		41020	24917	33842	33866	44448	44448					-0.022988054821894366
NQGAEGKIL	9	Unmodified	_NQGAEGKIL_					0	0	0			REV__ENSG00000153201|ENST00000283195|RANBP2	REV__ENSG00000153201|ENST00000283195|RANBP2	MULTI-MSMS	OvCa99_classI_Rep5	1	465.258056640625	2	465.256174	928.497795	2.4459	0.001138	0.53582	0.0002493	2.9817	0.0013873	465.2563117311809	94.92	0.5139	94.92	94.69	95.204	0					26	11	3	0	0	0	0.21231	1	10340	10340		74.255	0.28031	1	1119600	+		41021	20326	33843	33867	44449	44449					0.03068596892092046
NQGAEGKIL	9	Unmodified	_NQGAEGKIL_					0	0	0			REV__ENSG00000153201|ENST00000283195|RANBP2	REV__ENSG00000153201|ENST00000283195|RANBP2	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	465.256174	928.497795	2.4459	0.001138	0.53582	0.0002493	2.9817	0.0013873	465.2563117311809	94.92	0.5139	94.92	94.69	95.204	0	0	0	NaN	74.255	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1119600	+		41022	20326	33843	33867							0.03068596892092046
NQGEFKELV	9	Unmodified	_NQGEFKELV_					0	0	0		ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	ENSG00000163220|ENST00000368738|S100A9	MULTI-MSMS	OvCa99_classI_Rep5	1	532.2755126953125	2	532.274564	1062.53457	1.8342	0.00097632	0.455	0.00024218	2.2892	0.0012185	532.2743400187347	77.941	1.1167	77.941	77.381	78.498	0					80	26	5	0	0	0	0.046778	2	7871	7871;7902		120.87	46.613	1	13866000			41023	6279	33844	33868	44450;44451	44450					0.0058084871798200766
NQGGRISVIT	10	Unmodified	_NQGGRISVIT_					0	0	0		tr|A0A553SPA1|A0A553SPA1_NIACIRibosomalRNAsmallsubunitmethyltransferaseHOS=NialliacirculansOX=1397GN=rsmHPE=3SV=1	tr|A0A553SPA1|A0A553SPA1_NIACIRibosomalRNAsmallsubunitmethyltransferaseHOS=NialliacirculansOX=1397GN=rsmHPE=3SV=1	tr|A0A553SPA1|A0A553SPA1_NIACIRibosomalRNAsmallsubunitmethyltransferaseHOS=NialliacirculansOX=1397GN=rsmHPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.815185546875	2	522.793455	1043.57236	0.42079	0.00021998	3.7999	0.0019865	4.2207	0.0022065	522.7952534199369	110.16	0.69149	109.99	109.81	110.5	-0.17236					24	13	3	0	0	0	0.026849	1	10409	10409		40.778	0	1	39571			41024	34021	33845	33869	44452	44452					0.05231359703475391
NQGLPNELLL	10	Unmodified	_NQGLPNELLL_					0	0	0			REV__IPPK-IARS|1|fusion	REV__IPPK-IARS|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.810546875	2	555.811313	1109.60807	-0.44059	-0.00024489	-1.1395	-0.00063337	-1.5801	-0.00087826	555.8108461823545	100.79	1.3704	98.524	98.187	99.557	-2.2665					48	27	2	0	0	0	0.55109	1	9048	9048		47.96	1.9873	1	284270	+		41025	22809	33846	33870	44453	44453					0.057653971604850085
NQGPKLMQT	9	Unmodified	_NQGPKLMQT_					0	0	0		ENST00000469753.5_1_2:46300785-46301094:+|nuORF	ENST00000469753.5_1_2:46300785-46301094:+|nuORF	ENST00000469753.5_1_2:46300785-46301094:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.3028259277344	2	508.763309	1015.51206	-0.73905	-0.000376	-1.879	-0.00095596	-2.618	-0.001332	509.26409516305847	91.771	0.55312	89.229	88.862	89.415	-2.5425					13	10	2	0	0	0	0.027402	1	7927	7927		66.429	13.493	1	19836			41026	12350	33847	33871	44454	44454					0.00492926048730169
NQGSLRLILN	10	Unmodified	_NQGSLRLILN_					0	0	0		nc|ENSG00000164188|Q86VV4-3|RANBP3L;ENSG00000164188|ENST00000296604|RANBP3L	nc|ENSG00000164188|Q86VV4-3|RANBP3L	nc|ENSG00000164188|Q86VV4-3|RANBP3L	MULTI-MSMS	OvCa9_classI_Rep3	3	564.3319702148438	2	564.330205	1126.64586	-0.43401	-0.00024492	3.2893	0.0018562	2.8553	0.0016113	564.3317149048064	118.34	1.4386	117.3	116.89	118.32	-1.0324					67	28	4	0	0	0	0.50873	1	8948	8948		53.089	8.7118	1	367330			41027	6431	33848	33872	44455	44455					0.08759908145952977
NQGSSGDTPH	10	Unmodified	_NQGSSGDTPH_					0	0	0			REV__ENSG00000275342|ENST00000615670|PRAG1	REV__ENSG00000275342|ENST00000615670|PRAG1	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.79437255859375	2	500.209952	998.405351	-0.24664	-0.00012337	-1.5756	-0.00078813	-1.8222	-0.0009115	500.20892293058154	108.38	0.74261	108.15	107.68	108.42	-0.22498					24	14	2	0	0	0	0.026681	1	10155	10155		22.58	0	1	10276	+		41028	23625	33849	33873	44456	44456					-0.09391532912081857
NQHALFETP	9	Unmodified	_NQHALFETP_					0	0	0			REV__nc|ENSG00000165821|Q9Y467-3|SALL2	REV__nc|ENSG00000165821|Q9Y467-3|SALL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.2892456054688	2	528.759081	1055.50361	2.0432	0.0010804	-0.99356	-0.00052535	1.0497	0.00055502	528.7588787747488	80.601	0.59447	80.601	80.399	80.993	0					24	13	2	0	0	0	0.027462	1	8303	8303		21.96	0	1	1131000	+		41029	21125	33850	33874	44457	44457					-0.02192304596246686
NQHAVVSPPA	10	Unmodified	_NQHAVVSPPA_					0	0	0		ENSG00000141867|ENST00000679869|BRD4	ENSG00000141867|ENST00000679869|BRD4	ENSG00000141867|ENST00000679869|BRD4	MULTI-MSMS	OvCa9_classI_Rep3	3	510.26519775390625	2	510.267073	1018.51959	-2.39	-0.0012195	-1.8245	-0.000931	-4.2146	-0.0021506	510.2658621939305	141.23	0.93747	140.19	139.97	140.91	-1.0339					34	18	2	0	0	0	0.78463	1	11672	11672		20.947	1.587	1	69422			41030	4943	33851	33875	44458	44458					0.011074016406610099
NQHFVKDL	8	Unmodified	_NQHFVKDL_					0	0	0		tr|A0A553SQ22|A0A553SQ22_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16765PE=4SV=1	tr|A0A553SQ22|A0A553SQ22_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16765PE=4SV=1	tr|A0A553SQ22|A0A553SQ22_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16765PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.2878723144531	2	500.764166	999.513779	0.2694	0.0001349	-4.3478	-0.0021772	-4.0784	-0.0020423	500.7620689409806	46.073	0.65922	46.073	45.71	46.369	0					34	14	4	0	0	0	0.028476	1	3235	3235		44.117	6.9577	1	509600			41031	34109	33852	33876	44459	44459					0.01400303128991709
NQHFYFIR	8	Unmodified	_NQHFYFIR_					0	0	0			REV__tr|A0A553SR10|A0A553SR10_NIACIPolyphosphatekinaseOS=NialliacirculansOX=1397GN=ppkPE=3SV=1	REV__tr|A0A553SR10|A0A553SR10_NIACIPolyphosphatekinaseOS=NialliacirculansOX=1397GN=ppkPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.3389892578125	2	562.785433	1123.55631	4.307	0.0024239	-3.0672	-0.0017262	1.2397	0.0006977	562.7836129022943	88.36	0.58878	88.36	88.171	88.76	0					25	13	4	0	0	0	0.028476	1	9443	9443		25.45	8.977	1	820510	+		41032	30678	33853	33877	44460	44460					-0.0005230174278949562
NQHSALQRTF	10	Unmodified	_NQHSALQRTF_					0	0	0			REV__XPO1-USP34|3|fusion	REV__XPO1-USP34|3|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.24755859375	3	401.207266	1200.59997	0.50412	0.00020225	0.10735	4.3068E-05	0.61146	0.00024532	401.20714692042213	28.004	0.44901	28.004	27.791	28.24	0					11	8	2	0	0	0	0.027198	1	900	900		14.086	0	1	18226	+		41033	32759	33854	33878	44461	44461					0.0076926296369492775
NQIEDNKN	8	Unmodified	_NQIEDNKN_					0	0	0			REV__nc|ENSG00000106701|Q9BXM9-2|FSD1L	REV__nc|ENSG00000106701|Q9BXM9-2|FSD1L	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.28125	2	487.73052	973.446488	0.44083	0.00021501	0.32491	0.00015847	0.76574	0.00037348	487.7318056802282	96.903	0.4889	95.945	95.728	96.217	-0.95857					11	9	2	0	0	0	0.028476	1	8787	8787		97.473	28.988	1	6814.7	+		41034	17822	33855	33879	44462	44462					-0.04129771872612764
NQIFEIYPGF	10	Unmodified	_NQIFEIYPGF_					0	0	0			REV__tr|A0A553SLD8|A0A553SLD8_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_20445PE=4SV=1	REV__tr|A0A553SLD8|A0A553SLD8_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_20445PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	614.3095703125	2	614.305864	1226.59717	1.7305	0.0010631	0.7189	0.00044162	2.4494	0.0015047	614.3063011860733	127.68	0.68799	127.68	127.45	128.14	0					26	14	3	0	0	0	0.48198	1	14804	14804		56.721	8.7615	1	299020	+		41035	30213	33856	33880	44463	44463					-0.007060052138285755
NQIFRELD	8	Unmodified	_NQIFRELD_					0	0	0			REV__tr|A0A553SP60|A0A553SP60_NIACIRqc2homologRqcHOS=NialliacirculansOX=1397GN=rqcHPE=3SV=1	REV__tr|A0A553SP60|A0A553SP60_NIACIRqc2homologRqcHOS=NialliacirculansOX=1397GN=rqcHPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.251708984375	2	517.766906	1033.51926	-0.91536	-0.00047394	-1.7491	-0.00090561	-2.6644	-0.0013796	517.7661613804795	68.234	0.9814	68.234	67.996	68.977	0					32	23	2	0	0	0	0.028476	1	6479	6479		26.693	2.1737	1	344990	+		41036	30499	33857	33881	44464	44464					0.0038398192079966975
NQIGMKPLITE	11	Unmodified	_NQIGMKPLITE_					0	0	0			REV__nc|ENSG00000170054|Q86WD7-5|SERPINA9	REV__nc|ENSG00000170054|Q86WD7-5|SERPINA9	MULTI-SECPEP	OvCa99_classI_Rep5	1	622.86474609375	2	622.339381	1242.66421	1.7001	0.001058	-3.3436	-0.0020808	-1.6435	-0.0010228	622.3371564258559	117.68	0.97666	117.68	116.95	117.93	0					36	20	3	0	0	0	0.025806	1	13505	13505		24.519	0	1	240250	+		41037	21512	33858	33882	44465	44465					0.05258282005638648
NQIGRFFG	8	Unmodified	_NQIGRFFG_					0	0	0		nc|ENSG00000153956|P54289-4|CACNA2D1;nc|ENSG00000153956|P54289-5|CACNA2D1;nc|ENSG00000153956|P54289-3|CACNA2D1;ENSG00000153956|ENST00000356860|CACNA2D1;nc|ENSG00000153956|P54289|CACNA2D1	nc|ENSG00000153956|P54289-4|CACNA2D1	nc|ENSG00000153956|P54289-4|CACNA2D1	MULTI-MSMS	OvCa99_classI_Rep5	1	469.7499084472656	2	469.745776	937.477	1.1038	0.00051851	3.592	0.0016873	4.6958	0.0022058	469.7473923574563	142.55	0.54774	142.55	142.29	142.83	0					17	10	2	0	0	0	0.7043	1	16656	16656		42.474	5.3154	1	91643			41038	5704	33859	33883	44466	44466					0.005760513030963921
NQILLHLCL	9	Unmodified	_NQILLHLCL_					0	0	0			REV__ENST00000519416.5_2_8:38706173-38706524:+|nuORF	REV__ENST00000519416.5_2_8:38706173-38706524:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.3331909179688	2	533.807519	1065.60049	-0.99849	-0.000533	-1.466	-0.00078257	-2.4645	-0.0013156	533.8065554668067	69.903	0.8959	69.903	69.39	70.286	0					45	21	3	0	0	0	0.027462	1	6611	6611		24.203	0	1	805450	+		41039	27044	33860	33884	44467	44467					0.07030966359184276
NQINEVIEQ	9	Unmodified	_NQINEVIEQ_					0	0	0		tr|A0A7D6VRQ8|A0A7D6VRQ8_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03090PE=3SV=1	tr|A0A7D6VRQ8|A0A7D6VRQ8_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03090PE=3SV=1	tr|A0A7D6VRQ8|A0A7D6VRQ8_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03090PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	544.300048828125	2	543.774928	1085.5353	-1.045	-0.00056827	-2.762	-0.0015019	-3.807	-0.0020702	543.7722993079041	84.906	0.78441	82.657	82.222	83.006	-2.249					48	15	4	0	0	0	0.027462	1	4903	4903		23.042	5.6775	1	101340			41040	34949	33861	33885	44468	44468					-0.004043566329528403
NQIRQVLN	8	Unmodified	_NQIRQVLN_					0	0	0			REV__nc|ENSG00000231991|A6NMY6|ANXA2P2	REV__nc|ENSG00000231991|A6NMY6|ANXA2P2	MULTI-SECPEP	OvCa9_classI_Rep3	3	492.3116760253906	2	492.78289	983.551228	-0.67876	-0.00033448	-4.0406	-0.0019911	-4.7193	-0.0023256	492.7809715007939	102.51	1.5677	100.99	100.48	102.05	-1.5211					76	29	4	0	0	0	0.028476	1	7148	7148		38.806	7.2763	1	285620	+		41041	29147	33862	33886	44469	44469					0.05879394394605697
NQIRWTKV	8	Unmodified	_NQIRWTKV_					0	0	0			REV__nc|ENSG00000196821|Q9H6K1-2|ILRUN	REV__nc|ENSG00000196821|Q9H6K1-2|ILRUN	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.2810668945312	2	522.801083	1043.58761	2.0594	0.0010767	-1.9727	-0.0010313	0.086717	4.5336E-05	522.7998092259096	91.677	0.46436	91.677	91.415	91.879	0					22	9	3	0	0	0	0.028476	1	9862	9862		25.45	0	1	892770	+		41042	15720	33863	33887	44470	44470					0.06756271291305893
NQKAFVELL	9	Unmodified	_NQKAFVELL_					0	0	0		ENST00000557589.1_1_12:56815505-56817595:-|nuORF;nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS	ENST00000557589.1_1_12:56815505-56817595:-|nuORF	ENST00000557589.1_1_12:56815505-56817595:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.7997436523438	2	531.303124	1060.5917	1.8168	0.00096527	-1.9291	-0.0010249	-0.1123	-5.9667E-05	531.302987233586	115.33	0.98135	115.33	114.93	115.91	0					34	20	3	0	0	0	0.027447	1	13223	13223		56.721	3.3696	1	190410			41043	2831	33864	33888	44471	44471					0.06382315994369492
NQKAQKKKKL	10	Unmodified	_NQKAQKKKKL_					0	0	0			REV__NCOA7|p.E628Lfs*8|1|0.08|ENSG00000111912|chr6:125889932-125889933|-/AG|frameshift_variant	REV__NCOA7|p.E628Lfs*8|1|0.08|ENSG00000111912|chr6:125889932-125889933|-/AG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	405.23828125	3	405.262823	1212.76664	0.62479	0.00025321	1.2708	0.000515	1.8956	0.0007682	405.5985478404858	45.953	0.46908	42.88	42.561	43.03	-3.0724					11	8	2	0	0	0	0.026577	1	2365	2365		49.536	19.985	1	6317.3	+		41044	18070	33865	33889	44472	44472					0.16876735859409564
NQKCVFSW	8	Unmodified	_NQKCVFSW_					0	0	0		ENSG00000023839|ENST00000647814|ABCC2	ENSG00000023839|ENST00000647814|ABCC2	ENSG00000023839|ENST00000647814|ABCC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.2789001464844	2	506.23947	1010.46439	2.0715	0.0010487	3.2559	0.0016483	5.3274	0.002697	506.2405157198058	101.17	0.62833	101.17	100.86	101.48	0					32	14	3	0	0	0	0.028476	1	11256	11256		26.796	0	1	295180			41045	1041	33866	33890	44473	44473					-0.040427281514553215
NQKEKLEN	8	Unmodified	_NQKEKLEN_					0	0	0		ENST00000533296.5_1_6:130536401-130536509:-|nuORF	ENST00000533296.5_1_6:130536401-130536509:-|nuORF	ENST00000533296.5_1_6:130536401-130536509:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	501.30157470703125	2	501.764363	1001.51417	-0.032397	-1.6256E-05	-2.9869	-0.0014987	-3.0193	-0.001515	501.7627323252929	104	0.93967	102.56	102.18	103.12	-1.4347					27	17	2	0	0	0	0.028476	1	7213	7213		60.972	8.0352	1	26867			41046	13337	33867	33891	44474	44474					0.013476780581868297
NQKHRLLKN	9	Unmodified	_NQKHRLLKN_					0	0	0		ENST00000342992.10_3_2:179510673-179515519:-|nuORF	ENST00000342992.10_3_2:179510673-179515519:-|nuORF	ENST00000342992.10_3_2:179510673-179515519:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	575.84326171875	2	575.843813	1149.67307	-2.1491	-0.0012375	0.86974	0.00050083	-1.2794	-0.00073671	575.8441928035448	141.47	4.0925	141.24	139.21	143.3	-0.22696					166	82	3	0	0	0	0.59983	1	14170	14170		31.955	6.3808	1	100260			41047	10592	33868	33892	44475	44475					0.10422436476983421
NQKLFSYM	8	Unmodified	_NQKLFSYM_					0	0	0			REV__nc|ENSG00000075292|Q14966-4|ZNF638	REV__nc|ENSG00000075292|Q14966-4|ZNF638	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.30908203125	2	515.754953	1029.49535	0.99339	0.00051235	3.9769	0.0020511	4.9703	0.0025634	516.2598241966544	145.13	0.59166	145.13	144.89	145.48	0					18	12	2	0	0	0	0.028476	1	16957	16957		45.952	5.3793	1	36657	+		41048	16969	33869	33893	44476	44476					-0.0182157483723131
NQKLGKIKT	9	Unmodified	_NQKLGKIKT_					0	0	0		ENSG00000175467|ENST00000312397|SART1;ENST00000529532.5_1_11:65732585-65733974:+|nuORF	ENSG00000175467|ENST00000312397|SART1	ENSG00000175467|ENST00000312397|SART1	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.79541015625	2	515.324391	1028.63423	-0.81413	-0.00041954	-0.51913	-0.00026752	-1.3333	-0.00068706	515.324316312628	37.833	0.22874	37.833	37.668	37.896	0					9	4	3	0	0	0	0.027455	1	2096	2096		42.396	0	1	44576			41049	7547	33870	33894	44477	44477					0.12105711122626417
NQKLTNASLQ	10	Unmodified	_NQKLTNASLQ_					0	0	0			REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3	REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.8043212890625	2	558.80402	1115.59349	1.438	0.00080356	-1.5876	-0.00088717	-0.14963	-8.3612E-05	558.8031269906488	37.905	1.3398	35.012	34.741	36.081	-2.8925					69	26	5	0	0	0	0.71173	1	1425	1425		29.17	0.020503	1	291820	+		41050	20190	33871	33895	44478	44478					0.040313250123290345
NQKLTNASLQ	10	Unmodified	_NQKLTNASLQ_					0	0	0			REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3	REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	558.80402	1115.59349	-1.1825	-0.00066076	1.2948	0.00072356	0.11239	6.2803E-05	558.8046679316085	38.086	0.78979	35.376	35.026	35.816	-2.7097	0.18215	0.0013509	NaN	29.17	28	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54484	+		41051	20190	33871	33895							0.040313250123290345
NQKPVPRERIL	11	Unmodified	_NQKPVPRERIL_					0	0	0			REV__DDX24|p.K348R|1|0.04|ENSG00000089737|chr14:94062297-94062297|T/C|missense_variant	REV__DDX24|p.K348R|1|0.04|ENSG00000089737|chr14:94062297-94062297|T/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	450.26690673828125	3	450.605249	1348.79392	3.0433	0.0013713	-1.8327	-0.00082584	1.2106	0.00054548	450.60414436503396	71.285	0.7351	68.778	68.594	69.329	-2.5071					15	13	2	0	0	0	0.025297	1	5724	5724		43.651	0	1	17119	+		41052	16278	33872	33896	44479	44479					0.13347219399793175
NQKQKELLE	9	Unmodified	_NQKQKELLE_					0	0	0		nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	MULTI-MSMS	OvCa9_classI_Rep2	2	566.3123168945312	2	565.31422	1128.61389	-0.33863	-0.00019143	-0.4419	-0.00024981	-0.78053	-0.00044124	565.3146090333048	59.402	2.1276	56.622	55.838	57.966	-2.7801					203	40	7	0	0	0	0.33652	1	4355	4355		58.782	0.55203	1	1937000			41053	1589	33873	33897	44480	44480					0.054724956721202034
NQKTPTTIL	9	Unmodified	_NQKTPTTIL_					0	0	0		ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	MULTI-MSMS	OvCa9_classI_Rep2	2	508.29107666015625	2	508.292756	1014.57096	-0.83136	-0.00042257	0.50337	0.00025586	-0.32799	-0.00016671	508.2928265703731	115.58	1.632	115.47	114.95	116.58	-0.11777					68	32	4	0	0	0	0.3076	1	11053	11053		62.107	1.9892	1	251420			41054	6606	33874	33898	44481	44481					0.06425725614712974
NQKTPTTIL	9	Unmodified	_NQKTPTTIL_					0	0	0		ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	ENSG00000165868|ENST00000369209|HSPA12A	MULTI-MSMS	OvCa9_classI_Rep3	3	508.2909851074219	2	508.292756	1014.57096	-0.9868	-0.00050158	0.71941	0.00036567	-0.26739	-0.00013591	508.29294653313184	116.44	1.3851	115.39	115.05	116.43	-1.0414					64	27	4	0	0	0	0.33652	1	8707	8707		58.782	0.55203	1	264190			41055	6606	33874	33898	44482	44482					0.06425725614712974
NQKVSNIKG	9	Unmodified	_NQKVSNIKG_					0	0	0			REV__ENST00000554295.1_1_12:98850353-98850914:-|nuORF	REV__ENST00000554295.1_1_12:98850353-98850914:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.7667541503906	2	494.282723	986.550893	0.13713	6.7779E-05	3.4772	0.0017187	3.6144	0.0017865	494.2841085527139	63.014	0.90409	63.014	62.703	63.607	0					31	22	3	0	0	0	0.02744	1	5720	5720		44.377	2.9506	1	276680	+		41056	27526	33875	33899	44483	44483					0.057079746747604077
NQKVSNIKG	9	Unmodified	_NQKVSNIKG_					0	0	0			REV__ENST00000554295.1_1_12:98850353-98850914:-|nuORF	REV__ENST00000554295.1_1_12:98850353-98850914:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	494.282723	986.550893	1.2137	0.00059992	7.8442	0.0038772	9.0579	0.0044772	494.2873252153563	66.107	0.54647	63.412	63.269	63.816	-2.6958	0.19905	0.0034511	NaN	44.377	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15609	+		41057	27526	33875	33899							0.057079746747604077
NQLFVSLIF	9	Unmodified	_NQLFVSLIF_					0	0	0		L1MA1_dup882|chr3:174894625-174897831:+|1.387705056550523|0.3345806313734131|2.05|429.0|136|1|anti-sense	L1MA1_dup882|chr3:174894625-174897831:+|1.387705056550523|0.3345806313734131|2.05|429.0|136|1|anti-sense	L1MA1_dup882|chr3:174894625-174897831:+|1.387705056550523|0.3345806313734131|2.05|429.0|136|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.2731323242188	2	540.808042	1079.60153	0.10106	5.4656E-05	2.4325	0.0013155	2.5336	0.0013702	540.8091474975023	89.351	0.95804	87.22	86.944	87.902	-2.1309					41	18	3	0	0	0	0.027456	1	5533	5533		38.806	0	1	206280			41058	14570	33876	33900	44484	44484					0.06491503999745873
NQLHFIPVD	9	Unmodified	_NQLHFIPVD_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.663818359375	2	541.785099	1081.55564	-1.1278	-0.00061102	2.2413	0.0012143	1.1135	0.00060328	542.2884704728264	94.755	0.55113	92.286	92.16	92.711	-2.4685					15	10	2	0	0	0	0.027462	1	8316	8316		35.618	0	1	57212			41059	1457	33877	33901	44485	44485					0.01812858817538654
NQLHKHSF	8	Unmodified	_NQLHKHSF_					0	0	0		tr|A0A553SR28|A0A553SR28_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_00130PE=4SV=1	tr|A0A553SR28|A0A553SR28_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_00130PE=4SV=1	tr|A0A553SR28|A0A553SR28_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_00130PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.8097229003906	2	505.761958	1009.50936	-0.84041	-0.00042505	-0.87055	-0.00044029	-1.711	-0.00086534	505.7613216505459	74.159	0.61597	70.928	70.769	71.385	-3.2308					17	12	2	0	0	0	0.028476	1	5787	5787		24.203	0	1	39717			41060	34224	33878	33902	44486	44486					0.004988387060848254
NQLIDRNL	8	Unmodified	_NQLIDRNL_					0	0	0		ENSG00000142959|ENST00000372207|BEST4	ENSG00000142959|ENST00000372207|BEST4	ENSG00000142959|ENST00000372207|BEST4	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.2890319824219	2	493.274898	984.535243	-0.21557	-0.00010633	-0.66979	-0.00033039	-0.88536	-0.00043672	493.27440678330504	56.743	0.85736	56.743	56.538	57.396	0					24	19	2	0	0	0	0.028476	1	4813	4813		29.15	0	1	754340			41061	5004	33879	33903	44487	44487					0.04235688157700679
NQLKFPVKP	9	Unmodified	_NQLKFPVKP_					0	0	0		nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B;nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A	nc|ENSG00000158290|Q13620-3|CUL4B	nc|ENSG00000158290|Q13620-3|CUL4B	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.7285766601562	2	535.821484	1069.62842	1.1701	0.00062697	-2.1059	-0.0011284	-0.93578	-0.00050141	535.8204627444178	83.222	0.51002	83.222	83.035	83.545	0					22	11	3	0	0	0	0.027462	1	8666	8666		21.96	0	1	413050			41062	5942	33880	33904	44488	44488					0.09638612610933706
NQLLFASKVKL	11	Unmodified	_NQLLFASKVKL_					0	0	0			REV__nc|ENSG00000133265|Q9NZL4-3|HSPBP1	REV__nc|ENSG00000133265|Q9NZL4-3|HSPBP1	MULTI-MSMS	OvCa9_classI_Rep3	3	420.92718505859375	3	420.927329	1259.76016	1.2533	0.00052756	-1.2851	-0.00054095	-0.031812	-1.3391E-05	420.9267661520996	69.682	2.4064	66.928	66.572	68.979	-2.754					153	47	6	0	0	0	0.41331	1	3115	3115		60.167	7.078	1	1507300	+		41063	19138	33881	33905	44489	44489					0.1406679790804901
NQLNLIAID	9	Unmodified	_NQLNLIAID_					0	0	0			REV__tr|A0A553SGV7|A0A553SGV7_NIACI5-methylthioadenosine/S-adenosylhomocysteinedeaminaseOS=NialliacirculansOX=1397GN=mtaDPE=3SV=1	REV__tr|A0A553SGV7|A0A553SGV7_NIACI5-methylthioadenosine/S-adenosylhomocysteinedeaminaseOS=NialliacirculansOX=1397GN=mtaDPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.8288879394531	2	507.284931	1012.55531	0.77231	0.00039178	3.2473	0.0016473	4.0196	0.0020391	507.2848324449366	65.502	0.90406	62.806	62.365	63.269	-2.6958					38	17	3	0	0	0	0.027462	1	5075	5075		21.96	1.013	1	36678	+		41064	29743	33882	33906	44490	44490					0.04953439097653245
NQLRCLNSP	9	Unmodified	_NQLRCLNSP_					0	0	0			REV__ENST00000608684.1_1_1:78470094-78470214:-|nuORF	REV__ENST00000608684.1_1_1:78470094-78470214:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.3092041015625	2	522.766383	1043.51821	0.2954	0.00015442	-3.0815	-0.0016109	-2.7861	-0.0014565	522.7644458511983	103.31	0.54392	103.31	103.05	103.6	0					18	12	3	0	0	0	0.027418	1	11538	11538		68.787	10.005	1	368580	+		41065	28098	33883	33907	44491	44491					-0.0018055571977129148
NQLRCLNSP	9	Unmodified	_NQLRCLNSP_					0	0	0			REV__ENST00000608684.1_1_1:78470094-78470214:-|nuORF	REV__ENST00000608684.1_1_1:78470094-78470214:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	522.766383	1043.51821	0.20269	0.00010596	-4.3536	-0.0022759	-4.151	-0.00217	522.764069907349	104.43	0.62483	102.99	102.5	103.12	-1.4347	-0.15943	-0.00084169	NaN	68.787	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7772.2	+		41066	28098	33883	33907							-0.0018055571977129148
NQLRLAEYME	10	Unmodified	_NQLRLAEYME_					0	0	0		tr|A0A7D6VSD8|A0A7D6VSD8_9CLOTUDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranosehydrolaseOS=ClostridiumintestinaleOX=36845GN=pseGPE=4SV=1	tr|A0A7D6VSD8|A0A7D6VSD8_9CLOTUDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranosehydrolaseOS=ClostridiumintestinaleOX=36845GN=pseGPE=4SV=1	tr|A0A7D6VSD8|A0A7D6VSD8_9CLOTUDP-2,4-diacetamido-2,4,6-trideoxy-beta-L-altropyranosehydrolaseOS=ClostridiumintestinaleOX=36845GN=pseGPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	422.87823486328125	3	422.876417	1265.60742	0.83559	0.00035335	0.50137	0.00021202	1.337	0.00056537	422.876553123454	74.122	1.5789	74.122	73.829	75.407	0					101	39	4	0	0	0	0.53885	1	7332	7332		37.508	0	1	7553700			41067	35019	33884	33908	44492	44492					-0.014757655508901735
NQLRLELL	8	Unmodified	_NQLRLELL_					0	0	0			REV__VPS11|p.H291Tfs*36|1|0.04|ENSG00000160695|chr11:119081155-119081155|C/-|frameshift_variant	REV__VPS11|p.H291Tfs*36|1|0.04|ENSG00000160695|chr11:119081155-119081155|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	499.8040466308594	2	499.803291	997.59203	1.5368	0.00076812	1.2254	0.00061248	2.7623	0.0013806	499.8035618250622	92.38	1.2604	92.38	91.502	92.762	0					58	29	4	0	0	0	0.56113	1	9978	9978		71.378	2.5911	1	1512000	+		41068	20669	33885	33909	44493	44493					0.09313735714226823
NQLTNVPVI	9	Unmodified	_NQLTNVPVI_					0	0	0			REV__ENST00000487093.5_1_3:51624427-51671126:+|nuORF	REV__ENST00000487093.5_1_3:51624427-51671126:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	499.2889404296875	2	499.287474	996.560395	0.0027377	1.3669E-06	-0.79579	-0.00039733	-0.79305	-0.00039596	499.28710705090845	79.766	2.0701	77.426	76.61	78.68	-2.3399					104	40	4	0	0	0	0.24951	1	4359	4359		68.787	4.5796	1	2058500	+		41069	20938	33886	33910	44494	44494					0.061977429602734446
NQLTSLPSAI	10	Unmodified	_NQLTSLPSAI_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENSG00000066557|ENST00000370952|LRRC40	nc|ENSG00000177731|Q13045-3|FLII;ENSG00000066557|ENST00000370952|LRRC40	nc|ENSG00000177731|Q13045-3|FLII	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.2571411132812	2	522.290214	1042.56587	2.1195	0.001107	1.0902	0.00056939	3.2096	0.0016764	522.2906308590906	75.427	0.72083	75.427	74.88	75.601	0					26	17	3	0	0	0	0.026606	1	7458	7458		52.937	25.054	1	1088200			41070	7708;1353	33887	33911	44495	44495					0.04629421752088092
NQLYLRTRA	9	Unmodified	_NQLYLRTRA_					0	0	0		ENST00000455834.5_1_3:50606973-50608415:+|nuORF;ENST00000434410.5_2_3:50606662-50608415:+|nuORF;ENST00000424388.1_1_3:50607011-50608415:+|nuORF;ENST00000232854.8_1_3:50606657-50608415:+|nuORF	ENST00000455834.5_1_3:50606973-50608415:+|nuORF	ENST00000455834.5_1_3:50606973-50608415:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	568.312255859375	2	567.822547	1133.63054	0.11968	6.7958E-05	-1.9395	-0.0011013	-1.8198	-0.0010333	567.8212556411228	89.1	0.6882	86.498	86.085	86.773	-2.6027					19	13	2	0	0	0	0.027462	1	7598	7598		10.265	0	1	71809			41071	9728	33888	33912	44496	44496					0.06907041348745224
NQMELVKKI	9	Unmodified	_NQMELVKKI_					0	0	0			REV__ENST00000357006.8_1_18:5290207-5290390:-|nuORF	REV__ENST00000357006.8_1_18:5290207-5290390:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	551.8156127929688	2	551.818084	1101.62162	-2.0884	-0.0011524	-3.1518	-0.0017392	-5.2402	-0.0028917	551.8162910762125	104.31	1.7126	104.31	103.55	105.27	0					113	39	4	0	0	0	0.033166	1	11693	11693		132.76	0	1	2988300	+		41072	24777	33889	33913	44497	44497					0.07486931668063335
NQMWLSSHP	9	Unmodified	_NQMWLSSHP_					0	0	0		nc|ENSG00000108389|Q9NYA4|MTMR4;ENSG00000108389|ENST00000682306|MTMR4	nc|ENSG00000108389|Q9NYA4|MTMR4	nc|ENSG00000108389|Q9NYA4|MTMR4	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.763916015625	2	550.253108	1098.49166	1.0282	0.00056575	-0.71888	-0.00039556	0.30929	0.00017019	550.2526507974782	145.25	0.59166	145.25	144.89	145.48	0					34	12	4	0	0	0	0.027462	1	17011	17011		55.504	16.483	1	380690			41073	2651	33890	33914	44498	44498					-0.05364244611087088
NQNAGIKRI	9	Unmodified	_NQNAGIKRI_					0	0	0			REV__tr|A0A553SKB7|A0A553SKB7_NIACISingle-stranded-DNA-specificexonucleaseRecJOS=NialliacirculansOX=1397GN=recJPE=3SV=1	REV__tr|A0A553SKB7|A0A553SKB7_NIACISingle-stranded-DNA-specificexonucleaseRecJOS=NialliacirculansOX=1397GN=recJPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.80438232421875	2	507.296165	1012.57778	1.3537	0.00068674	4.1018	0.0020809	5.4556	0.0027676	507.2988235374079	146.81	0.4416	146.81	146.62	147.06	0					13	8	2	0	0	0	0.027462	1	17194	17194		42.396	0	1	18809	+		41074	30106	33891	33915	44499	44499					0.07199083285945562
NQNCKLFF	8	Unmodified	_NQNCKLFF_					0	0	0			REV__ENSG00000088881|ENST00000609451|EBF4	REV__ENSG00000088881|ENST00000609451|EBF4	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.8036193847656	2	507.247295	1012.48004	-1.2174	-0.00061752	3.2224	0.0016346	2.005	0.0010171	507.24879411164653	69.999	0.37727	69.999	69.712	70.089	0					13	8	2	0	0	0	0.028476	1	6671	6671		28.254	0	1	384250	+		41075	17186	33892	33916	44500	44500					-0.0257044163441833
NQNDPSLTSL	10	Unmodified	_NQNDPSLTSL_					0	0	0		nc|ENSG00000206530|Q96MT7-1|CFAP44;ENSG00000206530|ENST00000393845|CFAP44	nc|ENSG00000206530|Q96MT7-1|CFAP44	nc|ENSG00000206530|Q96MT7-1|CFAP44	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.2958374023438	2	544.76456	1087.51457	-0.4481	-0.00024411	1.62	0.00088252	1.1719	0.00063841	544.7654318907582	48.495	0.74283	48.495	48.332	49.075	0					26	16	2	0	0	0	0.026659	1	3620	3620		17.468	0	1	174010			41076	9100	33893	33917	44501	44501					-0.025689470126280867
NQNIPRQILIG	11	Unmodified	_NQNIPRQILIG_					0	0	0		tr|A0A7D6ZF25|A0A7D6ZF25_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16125PE=4SV=1	tr|A0A7D6ZF25|A0A7D6ZF25_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16125PE=4SV=1	tr|A0A7D6ZF25|A0A7D6ZF25_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16125PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.3665161132812	2	633.369861	1264.72517	-2.6571	-0.001683	1.5103	0.00095658	-1.1468	-0.00072637	633.3706685096566	150.42	2.9234	148.98	147.78	150.7	-1.4344					195	63	4	0	0	0	0.72466	1	14922	14922		19.997	0.89325	1	147740			41077	35498	33894	33918	44502	44502					0.1033955510006308
NQNMDLHIEE	10	Unmodified	_NQNMDLHIEE_					0	0	0		nc|ENSG00000138778|Q02224-3|CENPE;ENSG00000138778|ENST00000265148|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	nc|ENSG00000138778|Q02224-3|CENPE	MULTI-MSMS	OvCa99_classI_Rep5	1	621.7734375	2	621.774602	1241.53465	0.75642	0.00047032	-1.5289	-0.00095065	-0.77251	-0.00048033	621.7735556273027	132.61	0.80661	132.61	132.36	133.17	0					46	16	4	0	0	0	0.41408	1	15437	15437		66.429	0.96389	1	994180			41078	4730	33895	33919	44503	44503					-0.07645519344282548
NQNNVIVDF	9	Unmodified	_NQNNVIVDF_					0	0	0		tr|A0A553SF24|A0A553SF24_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_08085PE=4SV=1	tr|A0A553SF24|A0A553SF24_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_08085PE=4SV=1	tr|A0A553SF24|A0A553SF24_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_08085PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.8178100585938	2	531.764363	1061.51417	1.2848	0.0006832	-1.0654	-0.00056653	0.2194	0.00011667	531.7653350505785	136.88	1.1183	135.34	134.84	135.96	-1.5437					42	22	4	0	0	0	0.027441	1	13283	13283		49.442	3.4693	1	41007			41079	32982	33896	33920	44504	44504					-0.01412321941825212
NQNYYGVSI	9	Unmodified	_NQNYYGVSI_					0	0	0			REV__tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	REV__tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.306640625	2	529.251089	1056.48762	0.1842	9.7489E-05	-2.3421	-0.0012395	-2.1579	-0.001142	529.2497818757735	104.86	0.52051	103.51	103.31	103.83	-1.3482					15	9	2	0	0	0	0.027426	1	7328	7328		39.253	0	1	33910	+		41080	31958	33897	33921	44505	44505					-0.03836010833151704
NQPERLYMKRW	11	Unmodified	_NQPERLYMKRW_					0	0	0			REV__ENSG00000159915|ENST00000683810|ZNF233	REV__ENSG00000159915|ENST00000683810|ZNF233	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.7843933105469	3	507.597877	1519.7718	-1.081	-0.0005487	0.77875	0.00039529	-0.30223	-0.00015341	507.5984012474725	81.282	0.92738	78.571	78.249	79.176	-2.7106					29	18	2	0	0	0	0.026033	1	6733	6733		28.577	15.069	1	60427	+		41081	20632	33898	33922	44506	44506					0.03270671659697655
NQPGMKQP	8	Unmodified	_NQPGMKQP_					0	0	0		nc|ENSG00000184788|Q86VE3-2|SATL1;ENSG00000184788|ENST00000644105|SATL1	nc|ENSG00000184788|Q86VE3-2|SATL1	nc|ENSG00000184788|Q86VE3-2|SATL1	MULTI-SECPEP	OvCa9_classI_Rep3	3	450.2825927734375	2	450.22382	898.433086	-0.85277	-0.00038394	1.5542	0.00069974	0.70144	0.0003158	450.2245029306698	83.301	1.1206	81.005	80.68	81.8	-2.2963					34	23	2	0	0	0	0.028476	1	4712	4712		12.959	5.7658	1	42729			41082	8190	33899	33923	44507	44507					-0.020193011855553777
NQPILIRAK	9	Unmodified	_NQPILIRAK_					0	0	0		tr|A0A553STS9|A0A553STS9_NIACIPeptidoglycanbindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05705PE=4SV=1	tr|A0A553STS9|A0A553STS9_NIACIPeptidoglycanbindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05705PE=4SV=1	tr|A0A553STS9|A0A553STS9_NIACIPeptidoglycanbindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05705PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.8342895507812	2	526.832383	1051.65021	-1.4462	-0.00076193	3.7768	0.0019897	2.3306	0.0012278	526.832595694651	71.036	1.4523	67.58	67.203	68.656	-3.4563					68	29	4	0	0	0	0.29717	1	5410	5410		63.306	2.3343	1	1225200			41083	34529	33900	33924	44508	44508					0.12645417359476596
NQPKLFSSN	9	Unmodified	_NQPKLFSSN_					0	0	0			REV__ENST00000528511.6_2_11:71595487-71639632:-|nuORF	REV__ENST00000528511.6_2_11:71595487-71639632:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.769287109375	2	517.766906	1033.51926	0.13603	7.0432E-05	-1.3864	-0.00071783	-1.2504	-0.0006474	518.268405444025	72.555	0.55917	72.555	72.086	72.645	0					13	13	2	0	0	0	0.027462	1	7063	7063		11.511	0	1	201730	+		41084	27171	33901	33925	44509	44509					0.0038398192079966975
NQPKTILR	8	Unmodified	_NQPKTILR_					0	0	0			REV__nc|ENSG00000112335|O60493-3|SNX3	REV__nc|ENSG00000112335|O60493-3|SNX3	MULTI-SECPEP	OvCa9_classI_Rep2	2	484.8160705566406	2	485.295633	968.576714	-0.95618	-0.00046403	0.65613	0.00031842	-0.30005	-0.00014562	485.29586070730176	55.425	0.94386	52.612	52.172	53.116	-2.8139					36	18	3	0	0	0	0.028476	1	3893	3893		60.972	0	1	44783	+		41085	18095	33902	33926	44510	44510					0.09116868917055854
NQPLFGVRPR	10	Unmodified	_NQPLFGVRPR_					0	0	0			REV__chr19:11435710-11436072|87|40.56|0.31|7.04|+|2|PRKCSH,None|2	REV__chr19:11435710-11436072|87|40.56|0.31|7.04|+|2|PRKCSH,None|2	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.2627563476562	2	592.338364	1182.66217	2.7309	0.0016176	2.3538	0.0013943	5.0847	0.0030119	592.8408048041314	115.75	0.18667	115.75	115.68	115.86	0					6	3	2	0	0	0	0.026956	1	13233	13233		26.693	0	1	63834	+		41086	15961	33903	33927	44511	44511					0.07815034102691243
NQPPGPTDL	9	Unmodified	_NQPPGPTDL_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.25701904296875	2	469.732532	937.45051	-0.1835	-8.6196E-05	-0.78701	-0.00036969	-0.97051	-0.00045588	469.7321045731282	65.314	0.35634	65.314	65.111	65.467	0					14	8	2	0	0	0	0.027462	1	5999	5999		16.473	0	1	273890	+		41087	28942	33904	33928	44512	44512					-0.020716823789143746
NQPQPEEEA	9	Unmodified	_NQPQPEEEA_					0	0	0		ENAM|p.E968Afs*96|1|0.07|ENSG00000132464|chr4:70644328-70644329|-/CC|frameshift_variant;ENSG00000132464|ENST00000396073|ENAM	ENAM|p.E968Afs*96|1|0.07|ENSG00000132464|chr4:70644328-70644329|-/CC|frameshift_variant	ENAM|p.E968Afs*96|1|0.07|ENSG00000132464|chr4:70644328-70644329|-/CC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.781005859375	2	521.22781	1040.44107	-0.85789	-0.00044716	0.40267	0.00020988	-0.45522	-0.00023728	521.2282426050585	66.564	0.53944	63.074	62.805	63.344	-3.4902					12	10	2	0	0	0	0.027462	1	4874	4874		18.324	8.6188	1	16790			41088	795	33905	33929	44513	44513					-0.07753495455085613
NQPQSLLV	8	Unmodified	_NQPQSLLV_					0	0	0		ENSG00000243477|ENST00000443094|NAA80;nc|ENSG00000243477|Q93015-2|NAA80	ENSG00000243477|ENST00000443094|NAA80	ENSG00000243477|ENST00000443094|NAA80	MULTI-MSMS	OvCa99_classI_Rep5	1	449.75341796875	2	449.753267	897.491981	-0.050287	-2.2617E-05	-0.67929	-0.00030551	-0.72958	-0.00032813	449.7529290514715	39.292	2.3581	39.292	38.882	41.24	0					94	52	5	0	0	0	0.6962	1	2341	2341		44.117	1.2525	1	11139000			41089	9377	33906	33930	44514	44514					0.03913498380438796
NQPRRRRP	8	Unmodified	_NQPRRRRP_					0	0	0			REV__nc|ENSG00000101294|Q8TCT9-4|HM13	REV__nc|ENSG00000101294|Q8TCT9-4|HM13	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2872924804688	2	540.318297	1078.62204	-0.039112	-2.1133E-05	2.391	0.0012919	2.3518	0.0012707	540.3193901377774	61.005	0.51734	61.005	60.772	61.289	0					23	11	3	0	0	0	0.028476	1	5392	5392		26.796	2.5934	1	395320	+		41090	17488	33907	33931	44515	44515					0.08587532222804839
NQPTGDYFTQ	10	Unmodified	_NQPTGDYFTQ_					0	0	0		ENSG00000128408|ENST00000614167|RIBC2	ENSG00000128408|ENST00000614167|RIBC2	ENSG00000128408|ENST00000614167|RIBC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	585.8665161132812	2	585.756735	1169.49892	-1.9384	-0.0011354	-1.1856	-0.00069446	-3.1239	-0.0018299	585.7558514441033	127.15	0.64532	125.72	125.44	126.09	-1.4357					17	12	2	0	0	0	0.027088	1	12152	12152		26.693	5.746	1	16355			41091	3880	33908	33932	44516	44516					-0.07905233529663747
NQPTGDYFTQ	10	Unmodified	_NQPTGDYFTQ_					0	0	0		ENSG00000128408|ENST00000614167|RIBC2	ENSG00000128408|ENST00000614167|RIBC2	ENSG00000128408|ENST00000614167|RIBC2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	585.756735	1169.49892	0.49294	0.00028875	-4.5466	-0.0026632	-4.0537	-0.0023745	585.7539767836903	126.06	0.83743	125.83	125.65	126.49	-0.2359	0.055549	-0.0021922	NaN	26.693	20	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16114			41092	3880	33908	33932							-0.07905233529663747
NQPVDTAGRG	10	Unmodified	_NQPVDTAGRG_					0	0	0		ENSG00000162461|ENST00000294454|SLC25A34	ENSG00000162461|ENST00000294454|SLC25A34	ENSG00000162461|ENST00000294454|SLC25A34	MULTI-MSMS	OvCa99_classI_Rep5	1	507.7539367675781	2	507.751787	1013.48902	2.5904	0.0013153	1.9682	0.00099934	4.5586	0.0023146	507.7526526588141	100.67	1.5421	100.67	100.28	101.82	0					88	36	4	0	0	0	0.50999	1	11208	11208		52.937	5.0211	1	13015000			41093	6185	33909	33933	44517	44517					-0.017183767443725628
NQQALSHSI	9	Unmodified	_NQQALSHSI_					0	0	0		ENST00000442955.2_1_9:6669517-6669934:-|nuORF;ENSG00000121481|ENST00000367510|RNF2	ENST00000442955.2_1_9:6669517-6669934:-|nuORF	ENST00000442955.2_1_9:6669517-6669934:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.2568664550781	2	499.256705	996.498858	-1.0151	-0.00050681	-2.5741	-0.0012851	-3.5892	-0.0017919	499.25515882848566	70.165	1.2103	66.684	66.393	67.603	-3.4812					73	24	4	0	0	0	0.19758	1	5315	5315		76.774	18.544	1	690270			41094	3486	33910	33934	44518	44518					0.0004681126099512767
NQQCLHGDD	9	Unmodified	_NQQCLHGDD_					0	0	0		ENST00000357731.9_1_1:71872998-71873094:-|nuORF	ENST00000357731.9_1_1:71872998-71873094:-|nuORF	ENST00000357731.9_1_1:71872998-71873094:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.79541015625	2	515.206355	1028.39816	-0.7647	-0.00039398	4.0883	0.0021063	3.3236	0.0017124	515.2082211157178	37.962	0.35384	37.962	37.761	38.114	0					18	7	3	0	0	0	0.027462	1	2096	2096		34.173	0	1	175440			41095	10721	33911	33935	44519	44519					-0.11490588784158717
NQQILYAVQ	9	Unmodified	_NQQILYAVQ_					0	0	0			REV__ENSG00000186432|ENST00000334256|KPNA4	REV__ENSG00000186432|ENST00000334256|KPNA4	MULTI-SECPEP	OvCa9_classI_Rep2	2	539.2994995117188	2	538.790381	1075.56621	-0.61694	-0.0003324	-2.3031	-0.0012409	-2.92	-0.0015733	538.7900211484342	109.66	0.89091	109.49	109.12	110.01	-0.17237					21	17	2	0	0	0	0.027462	1	10333	10333		17.365	1.7232	1	32513	+		41096	22582	33912	33936	44520	44520					0.03144841471953441
NQQLPVKSL	9	Unmodified	_NQQLPVKSL_					0	0	0			REV__ENST00000470902.5_1_9:130911720-130912803:+|nuORF	REV__ENST00000470902.5_1_9:130911720-130912803:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.8139038085938	2	513.800749	1025.58694	-0.52126	-0.00026782	-0.98351	-0.00050533	-1.5048	-0.00077315	513.8008728310894	82.832	1.417	80.149	79.489	80.906	-2.6829					39	28	2	0	0	0	0.027462	1	6897	6897		24.519	9.6543	1	43329	+		41097	20105	33913	33937	44521	44521					0.07517431851624679
NQQLSPSGEP	10	Unmodified	_NQQLSPSGEP_					0	0	0			REV__ENST00000552995.5_1_12:108723923-108732991:-|nuORF	REV__ENST00000552995.5_1_12:108723923-108732991:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.2999267578125	2	528.751453	1055.48835	-2.3223	-0.0012279	3.2225	0.0017039	0.90028	0.00047602	529.2549837491537	49	0.41983	45.858	45.675	46.095	-3.1416					11	7	2	0	0	0	0.026659	1	2738	2738		30.318	22.627	1	23262	+		41098	27504	33914	33938	44522	44522					-0.03717216184099925
NQQNKKVEGG	10	Unmodified	_NQQNKKVEGG_					0	0	0		ZHX1|p.A197Vfs*9|1|0.03|ENSG00000165156|chr8:123255357-123255358|-/TGTGTAGGAATAA|frameshift_variant;ZHX1|p.S429Qfs*21|1|0.3|ENSG00000165156|chr8:123254629-123254662|TTTCTGCAGTAGGCTGAGCAGCAGGTACCTGACT/-|frameshift_variant;ENSG00000165156|ENST00000395571|ZHX1	ZHX1|p.A197Vfs*9|1|0.03|ENSG00000165156|chr8:123255357-123255358|-/TGTGTAGGAATAA|frameshift_variant	ZHX1|p.A197Vfs*9|1|0.03|ENSG00000165156|chr8:123255357-123255358|-/TGTGTAGGAATAA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.7864990234375	2	551.285994	1100.55744	2.2301	0.0012294	0.3238	0.00017851	2.5539	0.0014079	551.2861187555119	121.04	0.64545	121.04	120.78	121.43	0					40	14	5	0	0	0	0.026714	1	13952	13952		42.864	0	1	7690200			41099	6528	33915	33939	44523	44523					0.011178678354781368
NQQPSNYGP	9	Unmodified	_NQQPSNYGP_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	OvCa99_classI_Rep5	1	502.72686767578125	2	502.725238	1003.43592	-0.61179	-0.00030756	0.52	0.00026142	-0.09179	-4.6145E-05	502.7253537396015	51.814	0.66934	51.814	51.544	52.214	0					34	15	3	0	0	0	0.010652	1	4026	4026		166.68	78.036	1	1111000			41100	3541	33916	33940	44524	44524					-0.06565754527048284
NQQPSNYGP	9	Unmodified	_NQQPSNYGP_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	502.725238	1003.43592	-1.6379	-0.0008234	1.6321	0.00082048	-0.0058278	-2.9298E-06	502.7259297569306	54.892	0.55025	52.078	51.822	52.372	-2.8139	0.13203	0.00084827	NaN	166.68	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20701			41101	3541	33916	33940							-0.06565754527048284
NQQPSNYGPM	10	Unmodified	_NQQPSNYGPM_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	OvCa99_classI_Rep5	1	568.2472534179688	2	568.24548	1134.47641	-0.044871	-2.5498E-05	0.04524	2.5707E-05	0.00036922	2.0981E-07	568.2454442337918	68.67	1.0336	68.67	68.356	69.39	0					62	24	3	0	0	0	0.079666	2	6503	6475;6503		118.74	65.654	1	11994000			41102	3541	33917	33941	44525;44526	44526					-0.08545156198920267
NQQPSNYGPMK	11	Unmodified	_NQQPSNYGPMK_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	OvCa99_classI_Rep5	1	632.29345703125	2	632.292962	1262.57137	-0.020103	-1.2711E-05	0.087331	5.5219E-05	0.067228	4.2508E-05	632.292871514093	48.007	0.64799	48.007	47.724	48.372	0					39	14	4	0	0	0	0.079434	1	3494	3494		101.46	30.644	1	1847800			41103	3541	33918	33942	44527	44527					-0.04941222727757122
NQQQLEETK	9	Unmodified	_NQQQLEETK_					0	0	0			REV__CON__Q58D62	REV__CON__Q58D62	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.318359375	2	559.277835	1116.54112	-0.39796	-0.00022257	0.64361	0.00035995	0.24564	0.00013738	559.2780077446806	34.137	0.47559	34.137	33.969	34.444	0					13	9	2	0	0	0	0.027462	1	1637	1637		24.519	0	1	130220	+	+	41104	16214	33919	33943	44528	44528					-0.012492581212882214
NQQQQQHH	8	Unmodified	_NQQQQQHH_					0	0	0		nc|ENSG00000196588|Q969V6|MRTFA;ENSG00000196588|ENST00000355630|MRTFA;SPECC1L-MKL1|1|fusion	nc|ENSG00000196588|Q969V6|MRTFA;SPECC1L-MKL1|1|fusion	nc|ENSG00000196588|Q969V6|MRTFA	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.7964477539062	2	524.239378	1046.4642	-0.63526	-0.00033303	2.8085	0.0014723	2.1732	0.0011393	524.2407100154476	33.385	0.49478	33.385	33.186	33.681	0					19	9	3	0	0	0	0.028476	1	1554	1554		13.775	0	1	47550			41105	8631;32917	33920	33944	44529	44529					-0.0571701182709603
NQQRSEIN	8	Unmodified	_NQQRSEIN_					0	0	0			REV__tr|A0A7D6VLQ0|A0A7D6VLQ0_9CLOTLsafamilyABC-FtyperibosomalprotectionproteinOS=ClostridiumintestinaleOX=36845GN=lsaPE=4SV=1	REV__tr|A0A7D6VLQ0|A0A7D6VLQ0_9CLOTLsafamilyABC-FtyperibosomalprotectionproteinOS=ClostridiumintestinaleOX=36845GN=lsaPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.259521484375	2	494.743962	987.473371	-1.1841	-0.00058582	3.2321	0.001599	2.048	0.0010132	494.74575185485105	72.528	1.2152	69.132	68.618	69.833	-3.3961					49	24	3	0	0	0	0.028476	1	5554	5554		49.442	6.5773	1	385770	+		41106	31119	33921	33945	44530	44530					-0.020866632614229275
NQRAHLLDN	9	Unmodified	_NQRAHLLDN_					0	0	0		ENSG00000151532|ENST00000393077|VTI1A;TCF7L2-VTI1A|1|fusion;TCF7L2-VTI1A|2|fusion;ENST00000496445.5_1_10:114207101-114298148:+|nuORF;nc|ENSG00000151532|Q96AJ9-1|VTI1A;VTI1A-GLUD1|1|fusion	ENSG00000151532|ENST00000393077|VTI1A	ENSG00000151532|ENST00000393077|VTI1A	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.8060913085938	2	540.780879	1079.5472	-0.4835	-0.00026147	-3.1225	-0.0016886	-3.606	-0.00195	540.7785995278391	84.682	1.6388	82.421	81.257	82.896	-2.261					53	34	3	0	0	0	0.027461	1	4969	4969		40.778	9.2484	1	108010			41107	5562	33922	33946	44531	44531					0.010613049009180031
NQRGEYFE	8	Unmodified	_NQRGEYFE_					0	0	0			REV__tr|A0A553SRJ6|A0A553SRJ6_NIACISugarphosphateisomerase/epimeraseOS=NialliacirculansOX=1397GN=CEQ21_01205PE=4SV=1	REV__tr|A0A553SRJ6|A0A553SRJ6_NIACISugarphosphateisomerase/epimeraseOS=NialliacirculansOX=1397GN=CEQ21_01205PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	521.7318725585938	2	521.733063	1041.45157	0.25688	0.00013402	-1.5567	-0.00081217	-1.2998	-0.00067814	521.7320250700318	152.26	0.51614	152.26	151.97	152.49	0					25	10	3	0	0	0	0.7224	1	17824	17824		38.806	1.7777	1	154220	+		41108	30737	33923	33947	44532	44532					-0.06749468010002602
NQRGRPIL	8	Unmodified	_NQRGRPIL_					0	0	0			REV__ENST00000309534.10_1_3:88104888-88104972:-|nuORF	REV__ENST00000309534.10_1_3:88104888-88104972:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.2882080078125	2	477.2856	952.556647	0.5643	0.00026933	2.0405	0.0009739	2.6048	0.0012432	477.286425541348	89.351	1.3908	86.748	86.434	87.825	-2.6027					41	27	2	0	0	0	0.56113	1	7654	7654		71.378	16.602	1	326370	+		41109	24324	33924	33948	44533	44533					0.07847117977087237
NQRISLAIPN	10	Unmodified	_NQRISLAIPN_					0	0	0		ENSG00000165660|ENST00000298492|ABRAXAS2	ENSG00000165660|ENST00000298492|ABRAXAS2	ENSG00000165660|ENST00000298492|ABRAXAS2	MULTI-MSMS	OvCa9_classI_Rep2	2	563.32763671875	2	563.32238	1124.63021	-3.8795	-0.0021854	-2.5213	-0.0014203	-6.4008	-0.0036057	563.3208339373161	155.36	0.8447	155.13	154.8	155.64	-0.22697					43	26	2	0	0	0	0.7759	1	15867	15867		21.96	1.013	1	63890			41110	6586	33925	33949	44534	44534					0.07287621628893248
NQRKKFRRRWV	11	Unmodified	_NQRKKFRRRWV_					0	0	0		nc|ENSG00000106484|Q5EB52-3|MEST;nc|ENSG00000106484|Q5EB52-2|MEST;ENSG00000106484|ENST00000223215|MEST	nc|ENSG00000106484|Q5EB52-3|MEST	nc|ENSG00000106484|Q5EB52-3|MEST	MULTI-MSMS	OvCa9_classI_Rep3	3	525.3077392578125	3	525.314803	1572.92258	-7.2867	-0.0038278	-2.084	-0.0010947	-9.3707	-0.0049226	525.6477847524835	162.93	0.87314	161.54	161.11	161.98	-1.3925					47	18	3	0	0	0	0.72582	1	14198	14198		3.2113	0	1	37382			41111	2558	33926	33950	44535	44535					0.15903619153391446
NQRKQRRRLRL	11	Unmodified	_NQRKQRRRLRL_					0	0	0			REV__nc|ENSG00000101958|P23416-3|GLRA2	REV__nc|ENSG00000101958|P23416-3|GLRA2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.2464904785156	3	508.653708	1522.93929	-0.055134	-2.8044E-05	2.8555	0.0014525	2.8004	0.0014244	508.6550233445595	59.547	0.83387	56.155	55.904	56.738	-3.392					25	16	2	0	0	0	0.026344	1	4016	4016		6.001	0	1	77549	+		41112	17529	33927	33951	44536	44536					0.19874120039344234
NQRKQRRRLRL	11	Unmodified	_NQRKQRRRLRL_					0	0	0			REV__nc|ENSG00000101958|P23416-3|GLRA2	REV__nc|ENSG00000101958|P23416-3|GLRA2	MULTI-MATCH	OvCa9_classI_Rep2	2		3	508.653708	1522.93929	-0.58681	-0.00029848	3.5914	0.0018268	3.0046	0.0015283	508.9900051780586	58.818	0.86781	56.038	55.689	56.557	-2.7801	-0.05833	0.00043271	NaN	9.2118	43	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63827	+		41113	17529	33927	33951							0.19874120039344234
NQRLEAVLA	9	Unmodified	_NQRLEAVLA_					0	0	0		ENST00000546536.5_1_14:105957646-105963882:+|nuORF;nc|ENSG00000185347|Q86SX3-5|TEDC1;nc|ENSG00000185347|Q86SX3-3|TEDC1;nc|ENSG00000185347|Q86SX3-2|TEDC1;nc|ENSG00000185347|Q86SX3-6|TEDC1;ENSG00000185347|ENST00000392523|TEDC1;ENST00000551538.5_1_14:105963624-105963882:+|nuORF;nc|ENSG00000185347|Q86SX3-4|TEDC1	ENST00000546536.5_1_14:105957646-105963882:+|nuORF	ENST00000546536.5_1_14:105957646-105963882:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.29144287109375	2	507.290548	1012.56654	-1.5805	-0.00080176	1.0104	0.00051256	-0.57008	-0.0002892	507.29082702995066	72.575	1.409	69.178	68.667	70.076	-3.3961					94	28	5	0	0	0	0.48324	1	5589	5589		44.117	1.7207	1	591460			41114	13536	33928	33952	44537	44537					0.06076261191788035
NQRMCGLLVR	10	Unmodified	_NQRMCGLLVR_					0	0	0		ENSG00000176567|ENST00000320048|OR4X1	ENSG00000176567|ENST00000320048|OR4X1	ENSG00000176567|ENST00000320048|OR4X1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	594.8477783203125	2	595.31826	1188.62197	-0.32508	-0.00019353	3.2098	0.0019108	2.8847	0.0017173	595.3193368883062	80.497	0.68437	77.786	77.417	78.101	-2.7106					17	13	2	0	0	0	0.026734	1	6538	6538		39.253	0	1	122540			41115	7615	33929	33953	44538	44538					0.035200281162588
NQRRRVLYVRV	11	Unmodified	_NQRRRVLYVRV_					0	0	0			REV__ENST00000366783.7_1_1:227083353-227083530:+|nuORF	REV__ENST00000366783.7_1_1:227083353-227083530:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.958251953125	3	486.963659	1457.86915	-6.394	-0.0031137	-3.3725	-0.0016423	-9.7665	-0.0047559	486.96182500070705	161.6	3.2719	159.97	158.36	161.63	-1.6239					171	80	4	0	0	0	0.72548	1	16019	16019		9.2118	0.41249	1	99720	+		41116	24885	33930	33954	44539	44539					0.15852821650878468
NQRRTELK	8	Unmodified	_NQRRTELK_					0	0	0			REV__ENSG00000081277|ENST00000367324|PKP1	REV__ENSG00000081277|ENST00000367324|PKP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8171997070312	2	522.799072	1043.58359	-0.57659	-0.00030144	-2.0819	-0.0010884	-2.6585	-0.0013899	522.7995164949069	30.352	0.24705	30.352	30.186	30.433	0					6	4	2	0	0	0	0.028476	1	1153	1153		17.365	0	1	9561.4	+		41117	17070	33931	33955	44540	44540					0.06354181797587444
NQRRTKPRKRM	11	Unmodified	_NQRRTKPRKRM_					0	0	0		nc|ENSG00000165671|Q96L73-2|NSD1;ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;NSD1-ZNF346|6|fusion;NSD1-ZNF346|5|fusion;NSD1-ZNF346|4|fusion;NSD1-ZNF346|8|fusion;NSD1-ZNF346|3|fusion;NSD1-ZNF346|7|fusion	nc|ENSG00000165671|Q96L73-2|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-MSMS	OvCa9_classI_Rep2	2	490.9544982910156	3	490.956399	1469.84737	-4.4415	-0.0021806	1.4902	0.00073165	-2.9512	-0.0014489	490.9568488020549	161.6	0.67534	161.37	160.99	161.67	-0.22696					22	13	2	0	0	0	0.72548	1	16455	16455		9.2118	0	1	34552			41118	6589	33932	33956	44541	44541					0.1312369363063226
NQRRTKPRKRM	11	Unmodified	_NQRRTKPRKRM_					0	0	0		nc|ENSG00000165671|Q96L73-2|NSD1;ENSG00000165671|ENST00000439151|NSD1;nc|ENSG00000165671|Q96L73-3|NSD1;NSD1-ZNF346|6|fusion;NSD1-ZNF346|5|fusion;NSD1-ZNF346|4|fusion;NSD1-ZNF346|8|fusion;NSD1-ZNF346|3|fusion;NSD1-ZNF346|7|fusion	nc|ENSG00000165671|Q96L73-2|NSD1	nc|ENSG00000165671|Q96L73-2|NSD1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	490.956399	1469.84737	-6.2207	-0.0030541	5.7713	0.0028335	-0.44935	-0.00022061	491.294322278581	162.99	0.37665	161.35	161.11	161.48	-1.6336	-0.0071028	0.0053613	NaN	9.2118	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15066			41119	6589	33932	33956							0.1312369363063226
NQRTPLSL	8	Unmodified	_NQRTPLSL_					0	0	0		nc|ENSG00000198216|Q15878-2|CACNA1E;nc|ENSG00000198216|Q15878-3|CACNA1E;ENSG00000198216|ENST00000367573|CACNA1E;CACNA1E|p.R879W|1|0.45|ENSG00000198216|chr1:181732721-181732721|C/T|missense_variant	nc|ENSG00000198216|Q15878-2|CACNA1E	nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-MSMS	OvCa9_classI_Rep4_	4	464.7652893066406	2	464.764166	927.513779	-0.2743	-0.00012749	0.030107	1.3992E-05	-0.2442	-0.00011349	464.764080291045	68.862	1.0341	65.372	65.014	66.048	-3.4902					34	20	2	0	0	0	0.45246	1	5129	5129		82.305	8.3303	1	327360			41120	8797	33933	33957	44542	44542					0.04712303129008433
NQRTPLSL	8	Unmodified	_NQRTPLSL_					0	0	0		nc|ENSG00000198216|Q15878-2|CACNA1E;nc|ENSG00000198216|Q15878-3|CACNA1E;ENSG00000198216|ENST00000367573|CACNA1E;CACNA1E|p.R879W|1|0.45|ENSG00000198216|chr1:181732721-181732721|C/T|missense_variant	nc|ENSG00000198216|Q15878-2|CACNA1E	nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-MATCH	OvCa9_classI_Rep2	2		2	464.764166	927.513779	-1.3062	-0.00060707	1.1158	0.0005186	-0.19036	-8.8471E-05	464.76463366962827	68.07	1.0356	65.409	64.941	65.977	-2.661	0.018285	0.0005358	NaN	82.305	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85144			41121	8797	33933	33957							0.04712303129008433
NQSDKREFG	9	Unmodified	_NQSDKREFG_					0	0	0			REV__ENST00000302926.6_1_17:7322009-7322306:+|nuORF	REV__ENST00000302926.6_1_17:7322009-7322306:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.7720947265625	2	540.757069	1079.49959	0.36151	0.00019549	-3.1773	-0.0017181	-2.8157	-0.0015226	540.7548550758953	98.628	0.51993	96.943	96.697	97.217	-1.685					13	9	2	0	0	0	0.027462	1	6570	6570		35.618	0	1	11776	+		41122	24266	33934	33958	44543	44543					-0.03698394089951762
NQSDSEEEN	9	Unmodified	_NQSDSEEEN_					0	0	0		nc|ENSG00000091128|A4D0S4-3|LAMB4;ENSG00000091128|ENST00000388781|LAMB4	nc|ENSG00000091128|A4D0S4-3|LAMB4	nc|ENSG00000091128|A4D0S4-3|LAMB4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.2420654296875	2	526.194165	1050.37378	-1.4774	-0.00077741	0.28621	0.0001506	-1.1912	-0.00062681	526.1944441416772	66.3	0.43846	62.81	62.66	63.099	-3.4902					10	8	2	0	0	0	0.027462	1	4799	4799		27.882	0	1	12594			41123	1863	33935	33959	44544	44544					-0.14939570456704132
NQSKPKLYI	9	Unmodified	_NQSKPKLYI_					0	0	0			REV__nc|ENSG00000249730|P0C629|OR10J4	REV__nc|ENSG00000249730|P0C629|OR10J4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.7997436523438	2	545.816399	1089.61824	-0.6294	-0.00034354	0.30745	0.00016781	-0.32195	-0.00017573	545.8164323464933	121.64	1.1791	120.29	119.9	121.08	-1.3479					58	22	3	0	0	0	0.027462	1	11427	11427		40.778	20.781	1	245670	+		41124	29169	33936	33960	44545	44545					0.07702004885709357
NQSKRITTT	9	Unmodified	_NQSKRITTT_					0	0	0		L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|32|1|sense	L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|32|1|sense	L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|32|1|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.8067016601562	2	524.790912	1047.56727	-0.22263	-0.00011684	3.5855	0.0018817	3.3629	0.0017648	524.7924274451254	77.929	1.8881	76.139	75.311	77.199	-1.7894					128	36	5	0	0	0	0.027433	1	6577	6577		54.776	5.3348	1	361320			41125	14578	33937	33961	44546	44546					0.04539055840837136
NQSKRITTT	9	Unmodified	_NQSKRITTT_					0	0	0		L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|32|1|sense	L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|32|1|sense	L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|32|1|sense	MULTI-MATCH	OvCa99_classI_Rep5	1		2	524.790912	1047.56727	1.7847	0.00093657	4.3962	0.0023071	6.1808	0.0032437	524.7922798381177	76.521	0.2346	76.521	76.324	76.558	0	0.19066	0.00082569	NaN	54.776	14	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	630350			41126	14578	33937	33961							0.04539055840837136
NQSLETLLALR	11	Unmodified	_NQSLETLLALR_					0	0	0			REV__nc|ENSG00000156931|Q8N3P4-2|VPS8	REV__nc|ENSG00000156931|Q8N3P4-2|VPS8	MULTI-SECPEP	OvCa9_classI_Rep3	3	420.23541259765625	3	419.910227	1256.70885	-0.64656	-0.0002715	-0.44425	-0.00018655	-1.0908	-0.00045804	419.9104220122164	92.663	1.008	90.701	90.468	91.476	-1.9617					29	20	2	0	0	0	0.025819	1	5858	5858		38.714	10.137	1	37586	+		41127	20505	33938	33962	44547	44547					0.09076429143306086
NQSLLFLLN	9	Unmodified	_NQSLLFLLN_					0	0	0			REV__ENST00000592001.5_1_19:38865430-38871817:+|nuORF	REV__ENST00000592001.5_1_19:38865430-38871817:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	531.302978515625	2	531.303124	1060.5917	1.8168	0.00096527	-1.9291	-0.0010249	-0.1123	-5.9667E-05	531.302987233586	115.33	0.98135	115.33	114.93	115.91	0					34	20	3	0	0	0	0.34132	1	13193	13193		58.23	2.7257	1	190410	+		41128	17323	33939	33963	44548	44548					0.06382315994392229
NQSPTTVSI	9	Unmodified	_NQSPTTVSI_					0	0	0			REV__nc|ENSG00000078053|P49418-2|AMPH	REV__nc|ENSG00000078053|P49418-2|AMPH	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.7724304199219	2	473.745639	945.476725	-0.61088	-0.0002894	0.42337	0.00020057	-0.18751	-8.8831E-05	473.74554198943565	106.92	0.52775	105.04	104.75	105.28	-1.8785					20	9	3	0	0	0	0.027462	1	9712	9712		10.265	0	1	20926	+		41129	17019	33940	33964	44549	44549					0.001805867925554594
NQSPTTVSI	9	Unmodified	_NQSPTTVSI_					0	0	0			REV__nc|ENSG00000078053|P49418-2|AMPH	REV__nc|ENSG00000078053|P49418-2|AMPH	MULTI-MATCH	OvCa9_classI_Rep2	2		2	473.745639	945.476725	-0.4852	-0.00022986	0.51205	0.00024258	0.02685	1.272E-05	473.74583662540965	105.5	0.3482	105.06	104.8	105.15	-0.43642	0.0059816	0.00049325	NaN	14.137	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7708.8	+		41130	17019	33940	33964							0.001805867925554594
NQSPTTVSI	9	Unmodified	_NQSPTTVSI_					0	0	0			REV__nc|ENSG00000078053|P49418-2|AMPH	REV__nc|ENSG00000078053|P49418-2|AMPH	MULTI-MATCH	OvCa9_classI_Rep3	3		2	473.745639	945.476725	1.1805	0.00055924	-1.2886	-0.00061048	-0.10816	-5.1239E-05	473.744659027487	106.34	0.46883	105.07	104.85	105.32	-1.267	0.012304	-0.0012129	NaN	14.137	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18433	+		41131	17019	33940	33964							0.001805867925554594
NQSPVRQV	8	Unmodified	_NQSPVRQV_					0	0	0		nc|ENSG00000062038|P22223-2|CDH3;ENSG00000062038|ENST00000264012|CDH3;ENST00000542274.5_1_16:68679206-68732300:+|nuORF	nc|ENSG00000062038|P22223-2|CDH3	nc|ENSG00000062038|P22223-2|CDH3	MULTI-SECPEP	OvCa9_classI_Rep3	3	464.2850341796875	2	464.253966	926.493378	-0.76623	-0.00035573	2.1748	0.0010096	1.4085	0.00065392	464.2549494057417	95.436	0.69662	93.54	93.311	94.008	-1.8956					15	13	2	0	0	0	0.028476	1	6226	6226		45.952	24.25	1	37162			41132	1275	33941	33965	44550	44550					0.027191324691898444
NQSVQEGKS	9	Unmodified	_NQSVQEGKS_					0	0	0			REV__nc|ENSG00000115306|Q01082-3|SPTBN1	REV__nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	488.7703857421875	2	488.738345	975.462138	0.33842	0.0001654	3.7583	0.0018368	4.0967	0.0020022	488.7399625743539	64.859	1.0164	61.374	61.018	62.034	-3.4854					52	20	3	0	0	0	0.027433	1	4701	4701		45.972	1.5951	1	180640	+		41133	18234	33942	33966	44551	44551					-0.026574853555530353
NQTIDTSVTIL	11	Unmodified	_NQTIDTSVTIL_					0	0	0		tr|A0A553SKG8|A0A553SKG8_NIACIN-acetylmuramoyl-L-alanineamidaseOS=NialliacirculansOX=1397GN=CEQ21_18585PE=3SV=1	tr|A0A553SKG8|A0A553SKG8_NIACIN-acetylmuramoyl-L-alanineamidaseOS=NialliacirculansOX=1397GN=CEQ21_18585PE=3SV=1	tr|A0A553SKG8|A0A553SKG8_NIACIN-acetylmuramoyl-L-alanineamidaseOS=NialliacirculansOX=1397GN=CEQ21_18585PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	402.219970703125	3	402.218837	1203.63468	0.63051	0.0002536	0.79344	0.00031914	1.4239	0.00057274	402.219087303316	68.613	1.5415	65.993	65.671	67.213	-2.6203					93	30	5	0	0	0	0.57194	1	5429	5429		47.228	4.3634	1	637410			41134	33615	33943	33967	44552	44552					0.04101041261151295
NQTKEWAEP	9	Unmodified	_NQTKEWAEP_					0	0	0			REV__tr|A0A7D6VZK5|A0A7D6VZK5_9CLOTThreonine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=thrSPE=3SV=1	REV__tr|A0A7D6VZK5|A0A7D6VZK5_9CLOTThreonine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=thrSPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	551.76220703125	2	551.76182	1101.50909	1.9317	0.0010659	-3.4201	-0.0018871	-1.4884	-0.00082122	551.7597581865883	136.86	1.0103	136.86	136.58	137.59	0					33	20	2	0	0	0	0.51865	1	15993	15993		40.778	0.20554	1	612590	+		41135	31838	33944	33968	44553	44553					-0.03760625804443407
NQTLLLSDM	9	Unmodified	_NQTLLLSDM_					0	0	0		ENST00000547673.1_1_12:77242095-77243332:+|nuORF	ENST00000547673.1_1_12:77242095-77243332:+|nuORF	ENST00000547673.1_1_12:77242095-77243332:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.8195190429688	2	517.762975	1033.5114	-2.0482	-0.0010605	2.6041	0.0013483	0.55586	0.0002878	517.7636043815745	147.78	0.85197	146.34	145.92	146.78	-1.4351					20	16	2	0	0	0	0.027462	1	14506	14506		29.15	3.5755	1	17419			41136	13552	33945	33969	44554	44554					-0.004019133909878292
NQTLPWMEL	9	Unmodified	_NQTLPWMEL_					0	0	0			REV__nc|ENSG00000157368|Q6ZMJ4-2|IL34	REV__nc|ENSG00000157368|Q6ZMJ4-2|IL34	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.2991943359375	2	566.278792	1130.54303	1.9719	0.0011166	0.4373	0.00024764	2.4092	0.0013643	566.2788970658075	134.98	0.92062	134.98	134.81	135.73	0					26	19	2	0	0	0	0.027462	1	15785	15785		37.812	12.361	1	185400	+		41137	20517	33946	33970	44555	44555					-0.017019206370378015
NQTLTEPKS	9	Unmodified	_NQTLTEPKS_					0	0	0			REV__ENST00000577408.1_1_18:75683970-75684156:-|nuORF	REV__ENST00000577408.1_1_18:75683970-75684156:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	509.26708984375	2	509.264196	1016.51384	-0.33805	-0.00017216	1.0529	0.00053621	0.71487	0.00036406	509.26443169781953	69.563	0.69913	69.563	69.184	69.883	0					42	16	3	0	0	0	0.35694	1	6638	6638		56.434	1.6575	1	1332300	+		41138	27791	33947	33971	44556	44556					0.006242583383254896
NQTPVTLQV	9	Unmodified	_NQTPVTLQV_					0	0	0		ENSG00000063244|ENST00000308924|U2AF2;nc|ENSG00000063244|P26368-2|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	ENSG00000063244|ENST00000308924|U2AF2	MULTI-MSMS	OvCa99_classI_Rep5	1	500.2787780761719	2	500.277106	998.53966	1.5528	0.00077681	-0.078556	-3.93E-05	1.4742	0.00073751	500.2775619125229	98.119	0.8979	98.119	97.654	98.552	0					52	20	4	0	0	0	0.060996	1	10804	10804		112.41	13.782	1	4060200			41139	1288	33948	33972	44557	44557					0.040331525806209356
NQTQVKLNI	9	Unmodified	_NQTQVKLNI_					0	0	0		ENST00000559814.5_1_15:29346087-29400775:+|nuORF;nc|ENSG00000034053|Q99767-2|APBA2;ENSG00000034053|ENST00000683413|APBA2	ENST00000559814.5_1_15:29346087-29400775:+|nuORF	ENST00000559814.5_1_15:29346087-29400775:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	529.3076171875	2	529.303655	1056.59276	2.1977	0.0011633	3.0574	0.0016183	5.2551	0.0027816	529.3051538158101	74.939	1.7213	74.939	74.478	76.199	0					127	42	5	0	0	0	0.03923	1	7513	7513		127.46	17.342	1	17099000			41140	13724	33949	33973	44558	44558					0.0667253036326656
NQTRELRV	8	Unmodified	_NQTRELRV_					0	0	0		ENSG00000090339|ENST00000264832|ICAM1	ENSG00000090339|ENST00000264832|ICAM1	ENSG00000090339|ENST00000264832|ICAM1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.2882995605469	2	508.285797	1014.55704	2.3858	0.0012127	4.232	0.0021511	6.6178	0.0033637	508.28790736756616	99.562	0.6657	99.562	99.361	100.03	0					40	15	4	0	0	0	0.35821	1	11034	11034		96.19	0.15683	1	7247800			41141	1835	33950	33974	44559	44559					0.050344929062816846
NQTRLIEV	8	Unmodified	_NQTRLIEV_					0	0	0			REV__UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	REV__UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.78826904296875	2	486.777274	971.539994	2.1924	0.0010672	-0.22718	-0.00011058	1.9653	0.00095664	486.7769508368675	82.591	0.59929	82.591	82.307	82.906	0					28	13	3	0	0	0	0.028476	1	8550	8550		15.642	3.435	1	1391700	+		41142	18816	33951	33975	44560	44560					0.053085723004642205
NQTRQVVLD	9	Unmodified	_NQTRQVVLD_					0	0	0			REV__ENSG00000135842|ENST00000367511|NIBAN1	REV__ENSG00000135842|ENST00000367511|NIBAN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.8327026367188	2	536.790912	1071.56727	-1.9202	-0.0010308	0.020011	1.0742E-05	-1.9002	-0.00102	537.2926411720239	118.42	1.1049	117.07	116.63	117.73	-1.3444					32	20	3	0	0	0	0.027462	1	11076	11076		23.523	0	1	20076	+		41143	19328	33952	33976	44561	44561					0.034350558408505094
NQTVEPSEP	9	Unmodified	_NQTVEPSEP_					0	0	0			REV__ENSG00000164309|ENST00000446378|CMYA5	REV__ENSG00000164309|ENST00000446378|CMYA5	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.2947082519531	2	500.732729	999.450904	0.43308	0.00021686	-1.2691	-0.00063546	-0.83599	-0.00041861	500.7318610273186	87.2	0.95755	85.769	85.281	86.239	-1.4311					37	18	3	0	0	0	0.027295	1	7609	7609		64.207	11.271	1	61198	+		41144	20974	33953	33977	44562	44562					-0.04884307449708558
NQTVEPSEP	9	Unmodified	_NQTVEPSEP_					0	0	0			REV__ENSG00000164309|ENST00000446378|CMYA5	REV__ENSG00000164309|ENST00000446378|CMYA5	MULTI-MATCH	OvCa99_classI_Rep5	1		2	500.732729	999.450904	2.0718	0.0010374	5.7231	0.0028657	7.7949	0.0039032	500.73540435760333	86.001	0.44834	86.001	85.705	86.153	0	-0.0069327	0.0038897	NaN	64.207	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	381720	+		41145	20974	33953	33977							-0.04884307449708558
NQTVEPSEP	9	Unmodified	_NQTVEPSEP_					0	0	0			REV__ENSG00000164309|ENST00000446378|CMYA5	REV__ENSG00000164309|ENST00000446378|CMYA5	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	500.732729	999.450904	-1.6058	-0.00080407	-0.032673	-1.636E-05	-1.6385	-0.00082043	501.23432587130264	88.856	0.20033	86.253	86.136	86.336	-2.6027	0.2455	-0.0018745	NaN	64.207	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5751	+		41146	20974	33953	33977							-0.04884307449708558
NQTVLEAAQP	10	Unmodified	_NQTVLEAAQP_					0	0	0			REV__ENST00000480357.5_1_2:239002459-239002759:+|nuORF	REV__ENST00000480357.5_1_2:239002459-239002759:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	534.824951171875	2	535.77747	1069.54039	0.55552	0.00029763	-1.0804	-0.00057885	-0.52487	-0.00028121	535.7771643945662	89.064	0.9396	86.933	86.654	87.594	-2.1309					38	18	3	0	0	0	0.026994	1	5461	5461		25.574	0.12388	1	57635	+		41147	26459	33954	33978	44563	44563					0.008399472296332533
NQVAKILL	8	Unmodified	_NQVAKILL_					0	0	0			REV__ENSG00000135828|ENST00000367559|RNASEL	REV__ENSG00000135828|ENST00000367559|RNASEL	MULTI-SECPEP	OvCa99_classI_Rep5	1	449.7590026855469	2	449.789653	897.564752	0.97612	0.00043905	-1.0141	-0.00045613	-0.037973	-1.708E-05	449.7891680597203	45.624	0.52095	45.624	45.413	45.934	0					21	11	2	0	0	0	0.028476	1	3184	3184		52.299	0	1	294430	+		41148	19324	33955	33979	44564	44564					0.11187252173851903
NQVELALQI	9	Unmodified	_NQVELALQI_					0	0	0		PIK3C2A|p.F1330Sfs*13|1|0.04|ENSG00000011405|chr11:17101297-17101298|-/TAACATTTTAGAAAGAG|frameshift_variant;ENSG00000011405|ENST00000691414|PIK3C2A	PIK3C2A|p.F1330Sfs*13|1|0.04|ENSG00000011405|chr11:17101297-17101298|-/TAACATTTTAGAAAGAG|frameshift_variant	PIK3C2A|p.F1330Sfs*13|1|0.04|ENSG00000011405|chr11:17101297-17101298|-/TAACATTTTAGAAAGAG|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	514.2954711914062	2	514.292756	1026.57096	1.745	0.00089747	0.8144	0.00041884	2.5594	0.0013163	514.2930940409817	129.07	0.51523	129.07	128.84	129.35	0					19	10	3	0	0	0	0.42576	1	14965	14965		49.536	1.6204	1	109330			41149	964	33956	33980	44565	44565					0.058737256147196604
NQVFLDQDRD	10	Unmodified	_NQVFLDQDRD_					0	0	0			REV__ENST00000571210.1_1_17:19287777-19288718:-|nuORF	REV__ENST00000571210.1_1_17:19287777-19288718:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	625.2944946289062	2	625.294016	1248.57348	-4.4158	-0.0027612	4.1525	0.0025965	-0.26326	-0.00016462	625.2964528602282	153.01	0.78319	152.79	152.53	153.32	-0.22697					43	18	3	0	0	0	0.66798	1	15565	15565		29.17	0	1	37795	+		41150	21199	33957	33981	44566	44566					-0.040864707182890925
NQVLDSLVPLL	11	Unmodified	_NQVLDSLVPLL_					0	0	0		nc|ENSG00000101353|Q9H579-2|MROH8;ENSG00000101353|ENST00000343811|MROH8	nc|ENSG00000101353|Q9H579-2|MROH8	nc|ENSG00000101353|Q9H579-2|MROH8	MULTI-MSMS	OvCa99_classI_Rep5	1	605.8619384765625	2	605.855721	1209.69689	2.024	0.0012263	0.55951	0.00033898	2.5835	0.0015652	605.8559671641736	134.59	1.397	134.59	134.29	135.69	0					68	30	3	0	0	0	0.63561	1	15653	15653		41.427	7.2541	1	3282600			41151	2171	33958	33982	44567	44567					0.10042812400138246
NQVLVINGVL	10	Unmodified	_NQVLVINGVL_					0	0	0		tr|A0A7D6W454|A0A7D6W454_9CLOTArsenicalpump-drivingATPaseOS=ClostridiumintestinaleOX=36845GN=arsAPE=3SV=1	tr|A0A7D6W454|A0A7D6W454_9CLOTArsenicalpump-drivingATPaseOS=ClostridiumintestinaleOX=36845GN=arsAPE=3SV=1	tr|A0A7D6W454|A0A7D6W454_9CLOTArsenicalpump-drivingATPaseOS=ClostridiumintestinaleOX=36845GN=arsAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	534.8225708007812	2	534.824224	1067.63389	0.78501	0.00041984	-1.4246	-0.00076192	-0.63961	-0.00034208	534.8233903057377	88.317	1.1824	86.949	86.592	87.774	-1.3676					73	23	4	0	0	0	0.52321	1	7747	7747		51.335	0.14276	1	512270			41152	35470	33959	33983	44568	44568					0.10278291402732975
NQVNSQKKGAP	11	Unmodified	_NQVNSQKKGAP_					0	0	0		ENSG00000113594|ENST00000453190|LIFR;ENST00000503088.1_1_5:38490841-38530749:-|nuORF;ENST00000512723.1_1_5:38528826-38530749:-|nuORF	ENSG00000113594|ENST00000453190|LIFR	ENSG00000113594|ENST00000453190|LIFR	MULTI-MSMS	OvCa99_classI_Rep5	1	585.808349609375	2	585.814919	1169.61528	0.73184	0.00042873	-2.2926	-0.001343	-1.5607	-0.00091429	585.8136759324592	131.89	2.4742	131.89	131.15	133.63	0					227	52	6	0	0	0	0.14191	1	15495	15495		88.177	15.298	1	37991000			41153	2980	33960	33984	44569	44569					0.03726129760912045
NQVRRRDM	8	Unmodified	_NQVRRRDM_					0	0	0		ENSG00000205129|ENST00000378850|C4orf47	ENSG00000205129|ENST00000378850|C4orf47	ENSG00000205129|ENST00000378850|C4orf47	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.2998046875	2	537.782899	1073.55124	-1.6128	-0.00086735	-3.3821	-0.0018188	-4.9949	-0.0026862	537.781208512893	56.253	1.2879	53.449	52.928	54.216	-2.804					48	25	4	0	0	0	0.028476	1	3912	3912		35.618	0	1	127880			41154	9053	33961	33985	44570	44570					0.01741071122955873
NQVVMKPVI	9	Unmodified	_NQVVMKPVI_					0	0	0		ENST00000569205.5_2_15:55664113-55664218:-|nuORF	ENST00000569205.5_2_15:55664113-55664218:-|nuORF	ENST00000569205.5_2_15:55664113-55664218:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.261962890625	2	514.30207	1026.58959	0.05167	2.6574E-05	3.4068	0.0017521	3.4584	0.0017787	514.3037722793553	47.902	0.95708	44.795	44.287	45.244	-3.1077					28	18	2	0	0	0	0.027462	1	2554	2554		23.042	4.7181	1	113480			41155	13882	33962	33986	44571	44571					0.07735563984920191
NQVWEALPQSL	11	Unmodified	_NQVWEALPQSL_					0	0	0		ENST00000265970.11_1_11:17115925-17118806:-|nuORF;ENST00000531428.1_1_11:17099415-17121458:-|nuORF	ENST00000265970.11_1_11:17115925-17118806:-|nuORF	ENST00000265970.11_1_11:17115925-17118806:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	429.71685791015625	3	428.890944	1283.651	-0.015724	-6.7437E-06	-1.606	-0.00068878	-1.6217	-0.00069552	429.22496001140945	61.122	0.3047	61.122	60.984	61.289	0					10	6	2	0	0	0	0.025624	1	5378	5378		32.034	24.23	1	111440			41156	9955	33963	33987	44572	44572					0.020521672179029338
NQWFSFPE	8	Unmodified	_NQWFSFPE_					0	0	0		ENSG00000255561|ENST00000260257|FDXACB1;nc|ENSG00000255561|Q9BRP7-2|FDXACB1	ENSG00000255561|ENST00000260257|FDXACB1	ENSG00000255561|ENST00000260257|FDXACB1	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.3154907226562	2	527.735074	1053.4556	0.96472	0.00050912	3.0802	0.0016256	4.045	0.0021347	527.7368238507473	126.08	0.67772	125.01	124.76	125.44	-1.0715					17	12	2	0	0	0	0.028476	1	9860	9860		23.042	0	1	23663			41157	9458	33964	33988	44573	44573					-0.06899378516277466
NQWPSPGAL	9	Unmodified	_NQWPSPGAL_					0	0	0		ENSG00000105784|ENST00000394654|RUNDC3B;nc|ENSG00000105784|Q96NL0|RUNDC3B	ENSG00000105784|ENST00000394654|RUNDC3B	ENSG00000105784|ENST00000394654|RUNDC3B	MULTI-MSMS	OvCa99_classI_Rep5	1	485.242919921875	2	485.243067	968.47158	-0.1134	-5.5026E-05	-0.11802	-5.7269E-05	-0.23142	-0.00011229	485.2428708293973	58.508	0.411	58.508	58.363	58.774	0					15	9	2	0	0	0	0.31747	1	4982	4982		60.972	0.67798	1	973010			41158	2499	33965	33989	44574	44574					-0.013916722793851477
NQYKKQMLD	9	Unmodified	_NQYKKQMLD_					0	0	0		nc|ENSG00000141255|Q8NHS9-3|SPATA22;nc|ENSG00000141255|Q8NHS9-2|SPATA22;ENSG00000141255|ENST00000572969|SPATA22	nc|ENSG00000141255|Q8NHS9-3|SPATA22	nc|ENSG00000141255|Q8NHS9-3|SPATA22	MULTI-SECPEP	OvCa9_classI_Rep4_	4	584.3076171875	2	584.294973	1166.57539	-0.73747	-0.0004309	-2.0663	-0.0012073	-2.8037	-0.0016382	584.2934883803413	102.52	0.89493	100.32	99.884	100.78	-2.1994					31	16	3	0	0	0	0.027462	1	9190	9190		34.173	2.6427	1	39634			41159	4902	33966	33990	44575	44575					-0.0012313323402395326
NQYKKQMLD	9	Unmodified	_NQYKKQMLD_					0	0	0		nc|ENSG00000141255|Q8NHS9-3|SPATA22;nc|ENSG00000141255|Q8NHS9-2|SPATA22;ENSG00000141255|ENST00000572969|SPATA22	nc|ENSG00000141255|Q8NHS9-3|SPATA22	nc|ENSG00000141255|Q8NHS9-3|SPATA22	MULTI-MATCH	OvCa9_classI_Rep2	2		2	584.294973	1166.57539	-1.2811	-0.00074856	-2.0931	-0.001223	-3.3742	-0.0019715	584.293348672062	101.11	0.69386	100.35	99.973	100.67	-0.76401	0.012593	-0.0005448	NaN	34.173	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29747			41160	4902	33966	33990							-0.0012313323402395326
NQYKKQMLD	9	Unmodified	_NQYKKQMLD_					0	0	0		nc|ENSG00000141255|Q8NHS9-3|SPATA22;nc|ENSG00000141255|Q8NHS9-2|SPATA22;ENSG00000141255|ENST00000572969|SPATA22	nc|ENSG00000141255|Q8NHS9-3|SPATA22	nc|ENSG00000141255|Q8NHS9-3|SPATA22	MULTI-MATCH	OvCa9_classI_Rep3	3		2	584.294973	1166.57539	-2.0981	-0.0012259	-0.59516	-0.00034775	-2.6933	-0.0015737	584.2942843567984	101.86	0.83768	100.34	100	100.84	-1.5211	0.0057299	0.0012057	NaN	34.173	24	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52312			41161	4902	33966	33990							-0.0012313323402395326
NQYPDINVI	9	Unmodified	_NQYPDINVI_					0	0	0		ENSG00000097096|ENST00000341460|SYDE2	ENSG00000097096|ENST00000341460|SYDE2	ENSG00000097096|ENST00000341460|SYDE2	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.8258056640625	2	538.274564	1074.53457	-0.27376	-0.00014736	1.7162	0.00092378	1.4424	0.00077643	538.2752950794147	92.528	1.1775	90.544	89.879	91.057	-1.984					33	24	2	0	0	0	0.027433	1	5897	5897		26.693	0	1	87000			41162	1957	33967	33991	44576	44576					0.0002884871798869426
NQYRLIVNV	9	Unmodified	_NQYRLIVNV_					0	0	0		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	MULTI-MSMS	OvCa99_classI_Rep5	1	559.8208618164062	2	559.819473	1117.62439	2.4523	0.0013729	-0.44539	-0.00024934	2.0069	0.0011235	559.8191778112433	96.815	1.2377	96.815	96.501	97.738	0					74	28	5	0	0	0	0.031958	2	10624	10602;10624		133.81	50.166	1	10846000			41163	2877	33968	33992	44577;44578	44578					0.07028523117219265
NRAASVIQKAV	11	Unmodified	_NRAASVIQKAV_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.8461303710938	2	578.843479	1155.67241	-1.3483	-0.00078048	4.1617	0.002409	2.8134	0.0016285	578.8459272004168	81.977	0.8683	79.294	79.012	79.881	-2.6829					42	17	3	0	0	0	0.68757	1	6755	6755		33.922	1.9668	1	281350			41164	1348	33969	33993	44579	44579					0.10079597037270105
NRAELYQHL	9	Unmodified	_NRAELYQHL_					0	0	0		nc|ENSG00000064102|Q9NVM9-2|INTS13;ENSG00000064102|ENST00000261191|INTS13	nc|ENSG00000064102|Q9NVM9-2|INTS13	nc|ENSG00000064102|Q9NVM9-2|INTS13	MULTI-MSMS	OvCa99_classI_Rep5	1	572.30078125	2	572.298904	1142.58326	-0.184	-0.0001053	-0.36845	-0.00021087	-0.55245	-0.00031617	572.2985590885343	56.759	0.38024	56.759	56.538	56.918	0					26	8	4	0	0	0	0.3249	1	4728	4728		60.118	5.3419	1	1757700			41165	1293	33970	33994	44580	44580					0.017667620777501725
NRAKPVHLV	9	Unmodified	_NRAKPVHLV_					0	0	0		ENSG00000133106|ENST00000313624|EPSTI1;nc|ENSG00000133106|Q96J88|EPSTI1;nc|ENSG00000133106|Q96J88-3|EPSTI1	ENSG00000133106|ENST00000313624|EPSTI1	ENSG00000133106|ENST00000313624|EPSTI1	MULTI-MSMS	OvCa99_classI_Rep5	1	517.3154907226562	2	517.3169	1032.61925	-0.65675	-0.00033975	0.44675	0.00023111	-0.20999	-0.00010863	517.3169694262626	35.407	0.55504	35.407	35.198	35.753	0					28	11	4	0	0	0	0.61208	1	1784	1784		30.504	5.0535	1	502940			41166	4199	33971	33995	44581	44581					0.10424264045263953
NRAQRGPCL	9	Unmodified	_NRAQRGPCL_					0	0	0		ENSG00000189152|ENST00000344415|GRAPL	ENSG00000189152|ENST00000344415|GRAPL	ENSG00000189152|ENST00000344415|GRAPL	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7669372558594	2	507.766717	1013.51888	0.43978	0.0002233	-0.99853	-0.00050702	-0.55875	-0.00028372	507.76605298589374	131.19	1.6749	130.96	130.26	131.93	-0.22696					79	33	3	0	0	0	0.6653	1	12888	12888		24.203	1.1603	1	124560			41167	8540	33972	33996	44582	44582					0.012662837199513888
NRCEKPIQD	9	Unmodified	_NRCEKPIQD_					0	0	0		ENSG00000215853|ENST00000316073|RPTN	ENSG00000215853|ENST00000316073|RPTN	ENSG00000215853|ENST00000316073|RPTN	MULTI-MSMS	OvCa99_classI_Rep5	1	551.7720947265625	2	551.769123	1101.52369	1.0209	0.00056329	1.6637	0.000918	2.6846	0.0014813	551.7699830848313	150.24	1.3032	150.24	149.89	151.2	0					47	25	4	0	0	0	0.5811	1	17584	17584		34.173	2.6427	1	169630			41168	9210	33973	33997	44583	44583					-0.023008769279385888
NRDRREWGR	9	Unmodified	_NRDRREWGR_					0	0	0		nc|ENSG00000156304|O95104-2|SCAF4;nc|ENSG00000156304|O95104-3|SCAF4;ENSG00000156304|ENST00000286835|SCAF4	nc|ENSG00000156304|O95104-2|SCAF4	nc|ENSG00000156304|O95104-2|SCAF4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.5715637207031	3	415.550026	1243.62825	0.0053136	2.2081E-06	2.4789	0.0010301	2.4843	0.0010323	415.5508751854341	22.034	0.95644	20.696	20.422	21.378	-1.3386					38	18	3	0	0	0	0.027462	1	272	272		23.523	0.48021	1	64810			41169	5835	33974	33998	44584	44584					0.01618005663635813
NRDYYDIGRS	10	Unmodified	_NRDYYDIGRS_					0	0	0			REV__ENST00000572010.5_1_16:67995523-68003085:-|nuORF	REV__ENST00000572010.5_1_16:67995523-68003085:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	629.793212890625	2	629.794183	1257.57381	0.0033676	2.1209E-06	-1.8479	-0.0011638	-1.8446	-0.0011617	629.7928471894127	40.815	0.48465	40.815	40.619	41.104	0					28	10	4	0	0	0	0.762	1	2510	2510		23.523	0.94304	1	471010	+		41170	18661	33975	33999	44585	44585					-0.044670509984371165
NREAEKAL	8	Unmodified	_NREAEKAL_					0	0	0			REV__ENSG00000145362|ENST00000357077|ANK2	REV__ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.7532043457031	2	465.753798	929.493044	-0.081161	-3.7801E-05	-3.8228	-0.0017805	-3.904	-0.0018183	465.7514399168433	47.319	2.4038	44.246	42.876	45.279	-3.0724					87	46	3	0	0	0	0.64026	1	2534	2534		55.504	0.73953	1	2414500	+		41171	19961	33976	34000	44586	44586					0.025477127493331864
NRENLKEKL	9	Unmodified	_NRENLKEKL_					0	0	0		nc|ENSG00000185842|Q0VDD8|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	MULTI-MSMS	OvCa9_classI_Rep2	2	572.3275756835938	2	572.327662	1142.64077	-1.7804	-0.001019	1.597	0.00091398	-0.18348	-0.00010501	572.3282994633946	39.094	1.3403	36.384	36.161	37.501	-2.7097					57	26	4	0	0	0	0.63422	1	1882	1882		27.882	1.1893	1	239310			41172	15218	33977	34001	44587	44587					0.07515604283321409
NRERFNEP	8	Unmodified	_NRERFNEP_					0	0	0			REV__ENST00000565396.5_1_16:2048609-2048846:-|nuORF	REV__ENST00000565396.5_1_16:2048609-2048846:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.305419921875	2	531.259779	1060.50501	-1.185	-0.00062957	1.0088	0.00053591	-0.17629	-9.3654E-05	531.2605048606836	96.175	0.50768	93.749	93.559	94.067	-2.4256					12	9	2	0	0	0	0.028476	1	8489	8489		51.335	3.6781	1	10655	+		41173	21320	33978	34002	44588	44588					-0.022826705074749043
NRERLTLF	8	Unmodified	_NRERLTLF_					0	0	0			REV__ENSG00000133706|ENST00000394434|LARS1	REV__ENSG00000133706|ENST00000394434|LARS1	MULTI-MSMS	OvCa9_classI_Rep2	2	524.7991943359375	2	524.79854	1047.58253	1.1214	0.00058853	1.2676	0.00066524	2.389	0.0012538	524.7996505398438	129.03	0.98938	128.8	128.48	129.46	-0.22697					68	19	5	0	0	0	0.56195	1	12666	12666		71.296	7.0884	1	147420	+		41174	19154	33979	34003	44589	44589					0.060639674286903755
NRERPVVN	8	Unmodified	_NRERPVVN_					0	0	0		ENST00000513627.1_1_5:175921035-175923719:+|nuORF	ENST00000513627.1_1_5:175921035-175923719:+|nuORF	ENST00000513627.1_1_5:175921035-175923719:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	491.7826232910156	2	492.27269	982.530826	-1.3467	-0.00066294	-2.6125	-0.0012861	-3.9592	-0.001949	492.26983300490866	85.311	0.89169	83.09	82.744	83.636	-2.2204					37	17	4	0	0	0	0.028476	1	5039	5039		35.618	0	1	33869			41175	13018	33980	34004	44590	44590					0.038862237347984774
NRFKGVKYF	9	Unmodified	_NRFKGVKYF_					0	0	0		nc|ENSG00000074603|Q6V1X1-6|DPP8;ENSG00000074603|ENST00000300141|DPP8;nc|ENSG00000074603|Q6V1X1|DPP8;nc|ENSG00000074603|Q6V1X1-2|DPP8	nc|ENSG00000074603|Q6V1X1-6|DPP8	nc|ENSG00000074603|Q6V1X1-6|DPP8	MULTI-MSMS	OvCa99_classI_Rep5	1	579.8267822265625	2	579.824558	1157.63456	-0.18412	-0.00010676	-0.091738	-5.3192E-05	-0.27586	-0.00015995	579.824333784643	57.482	0.80524	57.482	57.264	58.069	0					63	18	4	0	0	0	0.29717	1	4824	4824		63.306	17.354	1	5189000			41176	1513	33981	34005	44591	44591					0.06205130842477047
NRFLRWLKPTK	11	Unmodified	_NRFLRWLKPTK_					0	0	0			REV__ENST00000339758.7_1_10:69571379-69597705:-|nuORF	REV__ENST00000339758.7_1_10:69571379-69597705:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	486.9588317871094	3	486.961256	1457.86194	-4.7825	-0.0023289	0.04792	2.3335E-05	-4.7346	-0.0023056	486.9610953135575	160.39	2.6298	160.16	159.25	161.88	-0.22696					128	53	4	0	0	0	0.72573	1	16421	16421		6.001	0	1	96650	+		41177	24617	33982	34006	44592	44592					0.15132089050416653
NRFLTIEEI	9	Unmodified	_NRFLTIEEI_					0	0	0		tr|A0A7D7A5S7|A0A7D7A5S7_9CLOTTerBfamilytelluriteresistanceproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07305PE=4SV=1	tr|A0A7D7A5S7|A0A7D7A5S7_9CLOTTerBfamilytelluriteresistanceproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07305PE=4SV=1	tr|A0A7D7A5S7|A0A7D7A5S7_9CLOTTerBfamilytelluriteresistanceproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07305PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.8111572265625	2	567.811313	1133.60807	1.1573	0.00065714	-1.5196	-0.00086283	-0.36226	-0.00020569	567.8104047215598	114.57	1.2429	113.17	112.68	113.92	-1.3977					54	23	3	0	0	0	0.51865	1	10640	10640		40.778	1.5253	1	327710			41178	36176	33983	34007	44593	44593					0.04661397160475644
NRFNYPFEL	9	Unmodified	_NRFNYPFEL_					0	0	0		ENST00000476588.5_1_3:93781949-93803329:+|nuORF;ENSG00000178694|ENST00000314622|NSUN3	ENST00000476588.5_1_3:93781949-93803329:+|nuORF	ENST00000476588.5_1_3:93781949-93803329:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	600.2953491210938	2	600.29583	1198.57711	1.2776	0.00076696	-1.2786	-0.00076751	-0.0009167	-5.5029E-07	600.2952473367644	116.37	1.3343	115.33	114.85	116.18	-1.0414					62	26	3	0	0	0	0.31747	2	8690	8690;8696		60.972	13.35	1	125570			41179	12468	33984	34008	44594;44595	44594					-0.014237561537584043
NRFNYPFEL	9	Unmodified	_NRFNYPFEL_					0	0	0		ENST00000476588.5_1_3:93781949-93803329:+|nuORF;ENSG00000178694|ENST00000314622|NSUN3	ENST00000476588.5_1_3:93781949-93803329:+|nuORF	ENST00000476588.5_1_3:93781949-93803329:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	600.2952270507812	2	600.29583	1198.57711	0.4121	0.00024738	-0.77291	-0.00046398	-0.36081	-0.00021659	600.2952332966147	116.65	1.9155	115.29	114.75	116.66	-1.3645					71	36	4	0	0	0	0.21231	1	10887	10887		74.255	21.318	1	130800			41180	12468	33984	34008	44596	44596					-0.014237561537584043
NRFPAVNSL	9	Unmodified	_NRFPAVNSL_					0	0	0		nc|ENSG00000108587|O95249-2|GOSR1;ENSG00000108587|ENST00000451249|GOSR1;nc|ENSG00000108587|O95249|GOSR1	nc|ENSG00000108587|O95249-2|GOSR1	nc|ENSG00000108587|O95249-2|GOSR1	MULTI-MSMS	OvCa99_classI_Rep5	1	509.2783203125	2	509.277441	1016.54033	2.3475	0.0011955	-0.077631	-3.9536E-05	2.2698	0.001156	509.2772924286602	84.183	0.55074	84.183	83.921	84.472	0					31	12	4	0	0	0	0.064985	1	8780	8780		110.12	49.148	1	1313100			41181	2663	33985	34009	44597	44597					0.032719920203248876
NRGAALARLLP	11	Unmodified	_NRGAALARLLP_					0	0	0		ENST00000445317.1_1_1:2984233-2984575:-|nuORF	ENST00000445317.1_1_1:2984233-2984575:-|nuORF	ENST00000445317.1_1_1:2984233-2984575:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	576.3546752929688	2	576.354014	1150.69348	-1.6325	-0.0009409	0.36768	0.00021191	-1.2648	-0.00072899	576.3541628827252	73.012	2.7388	69.615	69.301	72.04	-3.3961					157	56	5	0	0	0	0.2426	3	5684	5647;5659;5684		74.255	0	1	5280500			41182	11975	33986	34010	44598;44599;44600	44600					0.12415607136813378
NRGHAIKIKSA	11	Unmodified	_NRGHAIKIKSA_					0	0	0		ENSG00000127947|ENST00000248594|PTPN12;PTPN12-RSBN1L|6|fusion;PTPN12-RSBN1L|3|fusion;nc|ENSG00000127947|Q05209-2|PTPN12;nc|ENSG00000127947|Q05209-3|PTPN12;PTPN12-RSBN1L|4|fusion;PTPN12-RSBN1L|5|fusion;PTPN12-RSBN1L|1|fusion;PTPN12-RSBN1L|2|fusion	ENSG00000127947|ENST00000248594|PTPN12	ENSG00000127947|ENST00000248594|PTPN12	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.855712890625	2	597.856921	1193.69929	-1.5377	-0.00091935	0.67572	0.00040398	-0.86202	-0.00051536	597.8570606153338	148.28	4.8676	146.85	145.38	150.25	-1.435					291	102	5	0	0	0	0.70142	1	14595	14595		29.17	1.2878	1	767860			41183	3852	33987	34011	44601	44601					0.11018705648439209
NRGITILKN	9	Unmodified	_NRGITILKN_					0	0	0		tr|A0A7D7ACM1|A0A7D7ACM1_9CLOTSporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19675PE=4SV=1	tr|A0A7D7ACM1|A0A7D7ACM1_9CLOTSporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19675PE=4SV=1	tr|A0A7D7ACM1|A0A7D7ACM1_9CLOTSporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19675PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	514.8112182617188	2	514.81419	1027.61383	-0.39065	-0.00020111	-4.2271	-0.0021762	-4.6178	-0.0023773	514.8115920364356	103.44	1.0084	103.44	103.01	104.02	0					64	23	5	0	0	0	0.35444	1	11545	11545		56.721	3.3696	1	2059000			41184	36231	33988	34012	44602	44602					0.10112540462819197
NRGIVKVGT	9	Unmodified	_NRGIVKVGT_					0	0	0			REV__tr|A0A7D7A5E1|A0A7D7A5E1_9CLOTABC-FfamilyATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05585PE=4SV=1	REV__tr|A0A7D7A5E1|A0A7D7A5E1_9CLOTABC-FfamilyATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05585PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	472.2874755859375	2	472.287808	942.561064	-4.0924	-0.0019328	4.1769	0.0019727	0.084517	3.9916E-05	472.28971542959135	151.08	2.3118	150.13	149.45	151.76	-0.95645					105	45	4	0	0	0	0.67509	2	12834	12834;12846		23.042	0	1	815680	+		41185	32635	33989	34013	44603;44604	44603					0.08748582400005489
NRGIVKVGT	9	Unmodified	_NRGIVKVGT_					0	0	0			REV__tr|A0A7D7A5E1|A0A7D7A5E1_9CLOTABC-FfamilyATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05585PE=4SV=1	REV__tr|A0A7D7A5E1|A0A7D7A5E1_9CLOTABC-FfamilyATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05585PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.2879943847656	2	472.287808	942.561064	-2.429	-0.0011472	2.5145	0.0011876	0.085513	4.0387E-05	472.2888822731472	151.46	1.6275	150.03	149.41	151.04	-1.4344					87	36	4	0	0	0	0.62352	1	14959	14959		29.15	2.3535	1	477430	+		41186	32635	33989	34013	44605	44605					0.08748582400005489
NRGLNTPQL	9	Unmodified	_NRGLNTPQL_					0	0	0			REV__TRRAP|p.Q3700Cfs*14|1|0.37|ENSG00000196367|chr7:99011251-99011252|-/GTGCGTTAAATCTGTCACCAGAA|frameshift_variant	REV__TRRAP|p.Q3700Cfs*14|1|0.37|ENSG00000196367|chr7:99011251-99011252|-/GTGCGTTAAATCTGTCACCAGAA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	506.7817687988281	2	506.780348	1011.54614	1.1254	0.00057034	1.5705	0.00079592	2.6959	0.0013663	506.78086788889084	150.42	1.3541	150.42	149.89	151.25	0					55	26	3	0	0	0	0.51865	1	17591	17591		40.778	0.20554	1	118220	+		41187	22817	33990	34014	44606	44606					0.04083090531992184
NRGNISKIF	9	Unmodified	_NRGNISKIF_					0	0	0		tr|A0A553SUN5|A0A553SUN5_NIACIAAAfamilyATPaseOS=NialliacirculansOX=1397GN=CEQ21_03725PE=4SV=1	tr|A0A553SUN5|A0A553SUN5_NIACIAAAfamilyATPaseOS=NialliacirculansOX=1397GN=CEQ21_03725PE=4SV=1	tr|A0A553SUN5|A0A553SUN5_NIACIAAAfamilyATPaseOS=NialliacirculansOX=1397GN=CEQ21_03725PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	525.3021240234375	2	524.79854	1047.58253	-0.044328	-2.3263E-05	3.2131	0.0016862	3.1687	0.0016629	524.8003676874375	130.37	0.98898	129.26	129.03	130.02	-1.1121					41	19	3	0	0	0	0.27001	1	10356	10356		66.429	0.6261	1	97930			41188	34625	33991	34015	44607	44607					0.060639674286903755
NRGQFFTVY	9	Unmodified	_NRGQFFTVY_					0	0	0		ENSG00000064932|ENST00000361757|SBNO2;nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENST00000587673.5_1_19:1109158-1109530:-|nuORF	ENSG00000064932|ENST00000361757|SBNO2	ENSG00000064932|ENST00000361757|SBNO2	MULTI-MSMS	OvCa9_classI_Rep2	2	566.2822265625	2	566.282723	1130.55089	0.10353	5.8626E-05	-0.82814	-0.00046896	-0.72461	-0.00041034	566.2822211008561	96.266	1.6313	95.238	94.615	96.246	-1.0281					77	32	4	0	0	0	0.21231	3	8682	8677;8682;8688		74.255	21.854	1	436830			41189	1308	33992	34016	44608;44609;44610	44609					-0.009160253252503026
NRGQFFTVY	9	Unmodified	_NRGQFFTVY_					0	0	0		ENSG00000064932|ENST00000361757|SBNO2;nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENST00000587673.5_1_19:1109158-1109530:-|nuORF	ENSG00000064932|ENST00000361757|SBNO2	ENSG00000064932|ENST00000361757|SBNO2	MULTI-MSMS	OvCa9_classI_Rep3	3	566.2843017578125	2	566.282723	1130.55089	-0.79569	-0.00045058	0.45464	0.00025746	-0.34104	-0.00019313	566.2829499892662	97.205	1.779	95.445	94.793	96.572	-1.7595					73	34	4	0	0	0	0.24951	4	6427	6427;6433;6438;6444		68.787	12.872	1	602940			41190	1308	33992	34016	44611;44612;44613;44614	44611					-0.009160253252503026
NRGQFFTVY	9	Unmodified	_NRGQFFTVY_					0	0	0		ENSG00000064932|ENST00000361757|SBNO2;nc|ENSG00000064932|Q9Y2G9-3|SBNO2;ENST00000587673.5_1_19:1109158-1109530:-|nuORF	ENSG00000064932|ENST00000361757|SBNO2	ENSG00000064932|ENST00000361757|SBNO2	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.2841186523438	2	566.282723	1130.55089	1.3618	0.00077114	-2.1012	-0.0011899	-0.73939	-0.00041871	566.2815200169551	97.822	1.6691	95.443	94.659	96.328	-2.3786					74	32	4	0	0	0	0.14998	2	8684	8662;8684		84.916	38.149	1	541550			41191	1308	33992	34016	44615;44616	44616					-0.009160253252503026
NRGRPPEP	8	Unmodified	_NRGRPPEP_					0	0	0			REV__ENSG00000072071|ENST00000361434|ADGRL1	REV__ENSG00000072071|ENST00000361434|ADGRL1	MULTI-MSMS	OvCa9_classI_Rep3	3	461.74493408203125	2	461.746308	921.478063	-0.83418	-0.00038518	-2.3292	-0.0010755	-3.1634	-0.0014607	461.74511648930593	116.8	1.6831	115.76	115.49	117.17	-1.0414					73	33	4	0	0	0	0.60331	1	8759	8759		63.306	13.282	1	334790	+		41192	16909	33993	34017	44617	44617					0.014182656719867737
NRGSLLPSP	9	Unmodified	_NRGSLLPSP_					0	0	0		ENST00000559491.1_1_14:24629014-24629779:+|nuORF	ENST00000559491.1_1_14:24629014-24629779:+|nuORF	ENST00000559491.1_1_14:24629014-24629779:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.7530517578125	2	470.764166	939.513779	-0.2435	-0.00011463	0.28982	0.00013644	0.046324	2.1808E-05	470.76433883393986	50.953	0.65622	47.78	47.568	48.224	-3.1734					22	12	3	0	0	0	0.027455	1	2975	2975		51.335	1.8939	1	28473			41193	13718	33994	34018	44618	44618					0.04160303128992382
NRGTLMEL	8	Unmodified	_NRGTLMEL_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.2456970214844	2	467.244752	932.474951	-0.62476	-0.00029192	0.6013	0.00028096	-0.02346	-1.0961E-05	467.2448332994953	53.19	1.8282	49.982	49.651	51.479	-3.208					72	35	4	0	0	0	0.66057	1	3244	3244		51.335	1.3109	1	346850			41194	1242;1335;12773;14885	33995	34019	44619	44619					0.006012545029761895
NRHHGLLG	8	Unmodified	_NRHHGLLG_					0	0	0		ENST00000464036.5_1_1:1190585-1197670:-|nuORF;nc|ENSG00000160087|Q8N2K1-2|UBE2J2;ENSG00000160087|ENST00000349431|UBE2J2;nc|ENSG00000160087|Q8N2K1-3|UBE2J2	ENST00000464036.5_1_1:1190585-1197670:-|nuORF	ENST00000464036.5_1_1:1190585-1197670:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	451.95660400390625	2	452.249018	902.483482	0.36412	0.00016467	-1.8833	-0.00085171	-1.5192	-0.00068704	452.24795387766324	31.255	0.43535	31.255	31.124	31.559	0					15	8	3	0	0	0	0.028476	1	1278	1278		26.796	8.4717	1	91096			41195	6037	33996	34020	44620	44620					0.028339892544863687
NRHKFPVSGLI	11	Unmodified	_NRHKFPVSGLI_					0	0	0		tr|A0A7D6VU30|A0A7D6VU30_9CLOTtrehaloseoperonrepressorOS=ClostridiumintestinaleOX=36845GN=treRPE=4SV=1	tr|A0A7D6VU30|A0A7D6VU30_9CLOTtrehaloseoperonrepressorOS=ClostridiumintestinaleOX=36845GN=treRPE=4SV=1	tr|A0A7D6VU30|A0A7D6VU30_9CLOTtrehaloseoperonrepressorOS=ClostridiumintestinaleOX=36845GN=treRPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	422.748779296875	3	423.247173	1266.71969	-0.34693	-0.00014684	3.5026	0.0014825	3.1556	0.0013356	423.24900849429406	79.234	1.2393	76.482	76.038	77.277	-2.7514					38	25	2	0	0	0	0.025864	1	6436	6436		32.751	16.744	1	95633			41196	35160	33997	34021	44621	44621					0.09699876308286548
NRHKFPVSGLI	11	Unmodified	_NRHKFPVSGLI_					0	0	0		tr|A0A7D6VU30|A0A7D6VU30_9CLOTtrehaloseoperonrepressorOS=ClostridiumintestinaleOX=36845GN=treRPE=4SV=1	tr|A0A7D6VU30|A0A7D6VU30_9CLOTtrehaloseoperonrepressorOS=ClostridiumintestinaleOX=36845GN=treRPE=4SV=1	tr|A0A7D6VU30|A0A7D6VU30_9CLOTtrehaloseoperonrepressorOS=ClostridiumintestinaleOX=36845GN=treRPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		3	423.247173	1266.71969	0.42211	0.00017866	1.9288	0.00081636	2.3509	0.00099501	423.2484271545989	78.551	1.2403	76.198	75.85	77.091	-2.3527	-0.14208	-0.0011468	NaN	32.751	53	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115760			41197	35160	33997	34021							0.09699876308286548
NRHTVFHNG	9	Unmodified	_NRHTVFHNG_					0	0	0		L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|184|1|anti-sense;L1PA5_dup4809|chr6:151863684-151865093:+|1.0617149984704268|0.1855937726213876|2.52|421.0|66|2|anti-sense	L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|184|1|anti-sense	L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|184|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.300048828125	2	541.267939	1080.52132	-0.49299	-0.00026684	2.4779	0.0013412	1.9849	0.0010744	541.2693440634322	29.211	0.3493	29.211	29.037	29.387	0					11	6	2	0	0	0	0.027462	1	1013	1013		25.574	2.5373	1	65600			41198	14702	33998	34022	44622	44622					-0.015715445507112236
NRIAPQDEKP	10	Unmodified	_NRIAPQDEKP_					0	0	0		ENSG00000143971|ENST00000272342|ETAA1	ENSG00000143971|ENST00000272342|ETAA1	ENSG00000143971|ENST00000272342|ETAA1	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3059692382812	2	584.309469	1166.60439	-1.1294	-0.00065991	-2.7036	-0.0015797	-3.833	-0.0022397	584.3077482595431	100.35	3.8138	99.518	98.467	102.28	-0.83052					189	76	4	0	0	0	0.47142	1	9177	9177		58.23	1.7961	1	413450			41199	5113	33999	34023	44623	44623					0.02774727386622544
NRIKNNISY	9	Unmodified	_NRIKNNISY_					0	0	0		tr|A0A553SF78|A0A553SF78_NIACIGalactose-1-phosphateuridylyltransferaseOS=NialliacirculansOX=1397GN=galTPE=3SV=1	tr|A0A553SF78|A0A553SF78_NIACIGalactose-1-phosphateuridylyltransferaseOS=NialliacirculansOX=1397GN=galTPE=3SV=1	tr|A0A553SF78|A0A553SF78_NIACIGalactose-1-phosphateuridylyltransferaseOS=NialliacirculansOX=1397GN=galTPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	561.3084106445312	2	561.306729	1120.59891	0.70024	0.00039305	1.9691	0.0011052	2.6693	0.0014983	561.3077792838703	79.336	1.6702	77.596	77.302	78.972	-1.7398					77	32	3	0	0	0	0.11171	1	6655	6655		94.006	6.2521	1	898010			41200	33003	34000	34024	44624	44624					0.04343048594796528
NRILLNTV	8	Unmodified	_NRILLNTV_					0	0	0		ENST00000370952.3_1_1:70610904-70611018:-|nuORF	ENST00000370952.3_1_1:70610904-70611018:-|nuORF	ENST00000370952.3_1_1:70610904-70611018:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.7530517578125	2	471.790184	941.565815	-0.27693	-0.00013065	0.3002	0.00014163	0.023272	1.0979E-05	471.7901851726523	50.767	1.5217	47.594	47.205	48.726	-3.1734					74	29	4	0	0	0	0.028476	1	2975	2975		55.504	0	1	529240			41201	10942	34001	34025	44625	44625					0.09269466542764349
NRILSKSID	9	Unmodified	_NRILSKSID_					0	0	0			REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3	REV__nc|ENSG00000163704|Q5FWE3-2|PRRT3	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3032836914062	2	523.303655	1044.59276	-0.69596	-0.0003642	0.54848	0.00028702	-0.14748	-7.7179E-05	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.59259	1	13743	13743		32.812	4.9302	1	130240	+		41202	20877	34002	34026	44626	44626					0.07224530363282611
NRIQRRYFRFF	11	Unmodified	_NRIQRRYFRFF_					0	0	0		ENSG00000101407|ENST00000373447|TTI1;ENST00000487362.1_1_20:36640605-36642218:-|nuORF	ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.2378540039062	3	534.963659	1601.86915	2.0661	0.0011053	-0.70689	-0.00037816	1.3592	0.00072711	535.2973770558765	92.745	0.6655	92.745	92.428	93.093	0					22	15	2	0	0	0	0.02642	1	10064	10064		6.3209	0.31984	1	1426000			41203	2173	34003	34027	44627	44627					0.0922882165084502
NRIRVLKFKRY	11	Unmodified	_NRIRVLKFKRY_					0	0	0			REV__tr|A0A7D6W3W5|A0A7D6W3W5_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11525PE=4SV=1	REV__tr|A0A7D6W3W5|A0A7D6W3W5_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11525PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.309814453125	3	498.312288	1491.91504	-5.113	-0.0025478	0.297	0.000148	-4.816	-0.0023998	498.3123780141879	160.35	1.8473	160.12	159.68	161.53	-0.22697					120	37	4	0	0	0	0.72573	1	16342	16342		6.001	0.30226	1	150420	+		41204	31925	34004	34028	44628	44628					0.18875466833105747
NRIRVLKFKRY	11	Unmodified	_NRIRVLKFKRY_					0	0	0			REV__tr|A0A7D6W3W5|A0A7D6W3W5_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11525PE=4SV=1	REV__tr|A0A7D6W3W5|A0A7D6W3W5_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11525PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3078308105469	3	498.312288	1491.91504	-6.1524	-0.0030658	1.7848	0.00088941	-4.3676	-0.0021764	498.3133054732335	158.89	2.5083	157.31	156.27	158.78	-1.5859					162	69	3	0	0	0	0.72568	2	15674	15674;15683		6.6596	3.2509	1	46050	+		41205	31925	34004	34028	44629;44630	44629					0.18875466833105747
NRIRVLKFKRY	11	Unmodified	_NRIRVLKFKRY_					0	0	0			REV__tr|A0A7D6W3W5|A0A7D6W3W5_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11525PE=4SV=1	REV__tr|A0A7D6W3W5|A0A7D6W3W5_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11525PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3091735839844	3	498.312288	1491.91504	-6.6762	-0.0033268	2.0273	0.0010102	-4.6489	-0.0023166	498.3133001501435	161.41	1.8887	159.79	158.52	160.4	-1.6239					107	42	4	0	0	0	0.72573	2	15935	15884;15935		6.001	2.7897	1	100850	+		41206	31925	34004	34028	44631;44632	44632					0.18875466833105747
NRIVLLFLF	9	Unmodified	_NRIVLLFLF_					0	0	0			REV__tr|A0A7D6ZK60|A0A7D6ZK60_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11290PE=4SV=1	REV__tr|A0A7D6ZK60|A0A7D6ZK60_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11290PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	567.8573608398438	2	567.855327	1133.6961	0.94009	0.00053384	1.2371	0.00070251	2.1772	0.0012364	567.855944524341	140.04	3.3684	140.04	139.61	142.98	0					163	68	5	0	0	0	0.50066	1	16397	16397		42.474	1.9018	1	2052200	+		41207	32100	34005	34029	44633	44633					0.13460062541730622
NRKAESPPR	9	Unmodified	_NRKAESPPR_					0	0	0		ENSG00000115232|ENST00000397033|ITGA4;ENST00000476824.1_1_2:182363351-182392165:+|nuORF	ENSG00000115232|ENST00000397033|ITGA4	ENSG00000115232|ENST00000397033|ITGA4	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.81982421875	2	527.791247	1053.56794	-0.17951	-9.4743E-05	-3.3491	-0.0017676	-3.5286	-0.0018624	527.7895786884716	71.887	1.5336	69.284	68.584	70.117	-2.6023					54	30	2	0	0	0	0.027441	1	3399	3399		55.504	25.001	1	45511			41208	3072	34006	34030	44634	44634					0.04329895280557139
NRKAESPPR	9	Unmodified	_NRKAESPPR_					0	0	0		ENSG00000115232|ENST00000397033|ITGA4;ENST00000476824.1_1_2:182363351-182392165:+|nuORF	ENSG00000115232|ENST00000397033|ITGA4	ENSG00000115232|ENST00000397033|ITGA4	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	527.791247	1053.56794	-1.9919	-0.0010513	1.4129	0.00074572	-0.57895	-0.00030557	527.7904752915617	72.375	0.58372	68.978	68.862	69.446	-3.3961	-0.15301	0.0043985	NaN	55.504	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73773			41209	3072	34006	34030							0.04329895280557139
NRKAITYV	8	Unmodified	_NRKAITYV_					0	0	0			REV__nc|ENSG00000006125|P63010-3|AP2B1	REV__nc|ENSG00000006125|P63010-3|AP2B1	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.7831726074219	2	482.782359	963.550165	-0.8914	-0.00043035	0.47789	0.00023072	-0.41351	-0.00019964	482.78240925128404	81.313	1.3593	78.603	78.248	79.608	-2.7106					75	27	4	0	0	0	0.59148	1	6665	6665		65.803	1.5959	1	595370	+		41210	16411	34007	34031	44635	44635					0.06693180025683887
NRKECNRKV	9	Unmodified	_NRKECNRKV_					0	0	0		nc|ENSG00000133739|Q9C099-2|LRRCC1;ENSG00000133739|ENST00000360375|LRRCC1	nc|ENSG00000133739|Q9C099-2|LRRCC1	nc|ENSG00000133739|Q9C099-2|LRRCC1	MULTI-SECPEP	OvCa9_classI_Rep2	2	573.286865234375	2	573.811656	1145.60876	-2.388	-0.0013702	1.2621	0.00072422	-1.1259	-0.00064603	573.8123595761273	34.297	0.49496	31.588	31.415	31.91	-2.7097					11	9	2	0	0	0	0.027448	1	1325	1325		63.306	6.5852	1	8530.9			41211	15022	34008	34032	44636	44636					0.04177913328521754
NRKFQHIS	8	Unmodified	_NRKFQHIS_					0	0	0		L1MEd_dup7667|chr6:8012359-8012802:+|1.0229559823049363|0.4417392873998776|1.21|429.0|2|1|sense	L1MEd_dup7667|chr6:8012359-8012802:+|1.0229559823049363|0.4417392873998776|1.21|429.0|2|1|sense	L1MEd_dup7667|chr6:8012359-8012802:+|1.0229559823049363|0.4417392873998776|1.21|429.0|2|1|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	515.2849731445312	2	515.283057	1028.55156	0.59657	0.0003074	4.2999	0.0022157	4.8965	0.0025231	515.2848890732253	140.3	0.69145	140.3	139.7	140.4	0					18	14	2	0	0	0	0.68714	1	16392	16392		45.952	1.8352	1	58216			41212	14625	34009	34033	44637	44637					0.038428141144549954
NRKKPNSLVIN	11	Unmodified	_NRKKPNSLVIN_					0	0	0			REV__ENSG00000134463|ENST00000379215|ECHDC3	REV__ENSG00000134463|ENST00000379215|ECHDC3	MULTI-MSMS	OvCa9_classI_Rep3	3	642.3827514648438	2	641.883136	1281.75172	-4.605	-0.0029559	3.2611	0.0020933	-1.3439	-0.00086262	641.8852528126143	150.24	3.761	149.29	147.05	150.81	-0.95119					231	74	4	0	0	0	0.68399	1	12817	12817		35.152	2.3396	1	246170	+		41213	19206	34010	34034	44638	44638					0.12211243991418996
NRKKPNSLVIN	11	Unmodified	_NRKKPNSLVIN_					0	0	0			REV__ENSG00000134463|ENST00000379215|ECHDC3	REV__ENSG00000134463|ENST00000379215|ECHDC3	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8828125	2	641.883136	1281.75172	-2.5182	-0.0016164	1.1749	0.00075413	-1.3433	-0.00086223	641.8839546837315	150.47	2.9704	149.03	147.78	150.75	-1.4344					235	64	4	0	0	0	0.70761	1	15014	15014		27.047	0.3544	1	344900	+		41214	19206	34010	34034	44639	44639					0.12211243991418996
NRKLKTIPN	9	Unmodified	_NRKLKTIPN_					0	0	0		ENSG00000127083|ENST00000375550|OMD	ENSG00000127083|ENST00000375550|OMD	ENSG00000127083|ENST00000375550|OMD	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.3463745117188	2	542.33529	1082.65603	-1.5323	-0.00083103	-0.74414	-0.00040357	-2.2765	-0.0012346	542.3345108364445	92.813	0.65274	90.306	90.061	90.714	-2.5072					17	12	2	0	0	0	0.027462	1	8055	8055		27.882	0	1	13238			41215	3817	34011	34035	44640	44640					0.11800515871209427
NRKQAMSNS	9	Unmodified	_NRKQAMSNS_					0	0	0			REV__ENSG00000171940|ENST00000371471|ZNF217	REV__ENSG00000171940|ENST00000371471|ZNF217	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.77734375	2	518.25364	1034.49273	-0.36891	-0.00019119	0.19772	0.00010247	-0.17119	-8.8722E-05	518.2536470060599	30.856	0.53626	30.856	30.682	31.218	0					14	10	2	0	0	0	0.027426	1	1200	1200		53.351	19.179	1	24392	+		41216	21660	34012	34036	44641	44641					-0.02314030242177978
NRKWHYRQFRR	11	Unmodified	_NRKWHYRQFRR_					0	0	0			REV__ENST00000548895.1_1_12:69678801-69679005:+|nuORF	REV__ENST00000548895.1_1_12:69678801-69679005:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.3118286132812	3	549.634424	1645.88144	-0.48852	-0.00026851	-4.017	-0.0022079	-4.5056	-0.0024764	549.9665706209814	39.793	0.44676	36.839	36.665	37.112	-2.9541					19	8	3	0	0	0	0.026505	1	1684	1684		9.2118	5.5927	1	30564	+		41217	27449	34013	34037	44642	44642					0.08433858113903625
NRLFYAVD	8	Unmodified	_NRLFYAVD_					0	0	0		nc|ENSG00000013561|Q9UBS8-2|RNF14;ENSG00000013561|ENST00000394520|RNF14	nc|ENSG00000013561|Q9UBS8-2|RNF14	nc|ENSG00000013561|Q9UBS8-2|RNF14	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.9432067871094	2	499.258717	996.50288	0.12535	6.2584E-05	0.13286	6.6331E-05	0.25821	0.00012892	499.2587504353324	81.022	0.95369	79.374	78.915	79.869	-1.6485					35	18	2	0	0	0	0.028476	1	6853	6853		60.294	0	1	63838			41218	989	34014	34038	44643	44643					0.004489007547022084
NRLFYSMLT	9	Unmodified	_NRLFYSMLT_					0	0	0			REV__ENST00000407924.2_1_6:27705341-27705923:-|nuORF	REV__ENST00000407924.2_1_6:27705341-27705923:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	571.8065795898438	2	572.794609	1143.57467	-1.1708	-0.00067062	-4.1798	-0.0023941	-5.3505	-0.0030648	572.7919015153526	90.71	1.0665	88.63	88.259	89.326	-2.0805					41	20	3	0	0	0	0.027462	1	5606	5606		42.396	16.822	1	32968	+		41219	25459	34015	34039	44644	44644					0.008620721169108947
NRLGLINPR	9	Unmodified	_NRLGLINPR_					0	0	0			REV__ENSG00000099985|ENST00000215781|OSM	REV__ENSG00000099985|ENST00000215781|OSM	MSMS	OvCa9_classI_Rep3	3	526.81982421875	2	526.819807	1051.62506	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.996	1	69.394	68.894	69.894	-2.6023								0	0	0	0.16846	1	3399	3399		55.504	11.387	1		+		41220	17347	34016	34040	44645	44645					0.10131362556944623
NRLHKVFYG	9	Unmodified	_NRLHKVFYG_					0	0	0			REV__ENSG00000172352|ENST00000382407|CDY1B	REV__ENSG00000172352|ENST00000382407|CDY1B	MULTI-MSMS	OvCa9_classI_Rep3	3	567.31640625	2	567.314358	1132.61416	2.0704	0.0011746	-0.40446	-0.00022945	1.666	0.00094513	567.3139739099872	57.536	1.95	54.41	53.788	55.738	-3.1264					89	52	3	0	0	0	0.58665	1	1777	1777		33.516	4.366	1	66904	+		41221	21688	34017	34041	44646	44646					0.053159601826337166
NRLHPVDTF	9	Unmodified	_NRLHPVDTF_					0	0	0			REV__tr|A0A553SFV1|A0A553SFV1_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09525PE=4SV=1	REV__tr|A0A553SFV1|A0A553SFV1_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09525PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	549.7877807617188	2	549.788173	1097.56179	0.62318	0.00034262	4.3867	0.0024117	5.0098	0.0027544	549.7904516366648	140.14	0.71002	140.14	139.92	140.63	0					28	14	3	0	0	0	0.53957	1	16377	16377		38.806	4.6336	1	178210	+		41222	29626	34018	34042	44647	44647					0.016913770490191382
NRLKQVFLN	9	Unmodified	_NRLKQVFLN_					0	0	0		tr|A0A553SQ13|A0A553SQ13_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_15205PE=4SV=1	tr|A0A553SQ13|A0A553SQ13_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_15205PE=4SV=1	tr|A0A553SQ13|A0A553SQ13_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_15205PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	566.3326416015625	2	566.33529	1130.65603	-0.99415	-0.00056302	0.99736	0.00056484	0.0032101	1.818E-06	566.3356882188241	101.75	2.3041	100.23	99.583	101.89	-1.5211					96	43	4	0	0	0	0.50149	1	6974	6974		42.396	1.618	1	254070			41223	34104	34019	34043	44648	44648					0.09592515871190699
NRLLYLLY	8	Unmodified	_NRLLYLLY_					0	0	0			REV__ENST00000421661.1_2_1:100524254-100527562:+|nuORF	REV__ENST00000421661.1_2_1:100524254-100527562:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	534.3145751953125	2	534.316035	1066.61752	-2.3044	-0.0012313	2.8408	0.0015179	0.53632	0.00028657	534.3174208530834	118.08	1.0444	117.93	117.74	118.78	-0.14755					43	20	3	0	0	0	0.72922	1	11340	11340		37.028	1.8278	1	132020	+		41224	25608	34020	34044	44649	44649					0.08687210236666942
NRLLYLLY	8	Unmodified	_NRLLYLLY_					0	0	0			REV__ENST00000421661.1_2_1:100524254-100527562:+|nuORF	REV__ENST00000421661.1_2_1:100524254-100527562:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.3156127929688	2	534.316035	1066.61752	-2.4439	-0.0013058	2.6422	0.0014118	0.19837	0.00010599	534.317334713177	119.53	1.2033	118.19	117.88	119.08	-1.3444					54	22	4	0	0	0	0.69415	1	11220	11220		44.531	2.0566	1	154360	+		41225	25608	34020	34044	44650	44650					0.08687210236666942
NRLPGAQRGLI	11	Unmodified	_NRLPGAQRGLI_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8560791015625	2	597.856921	1193.69929	-2.4902	-0.0014888	1.4044	0.0008396	-1.0859	-0.00064919	597.8575960796461	144.35	4.0594	144.12	142.06	146.12	-0.22696					210	81	4	0	0	0	0.72499	1	14640	14640		15.642	0	1	136500	+		41226	17630	34021	34045	44651	44651					0.11018705648461946
NRLPLVVSF	9	Unmodified	_NRLPLVVSF_					0	0	0		nc|ENSG00000109270|Q9UHA4-2|LAMTOR3;ENSG00000109270|ENST00000499666|LAMTOR3	nc|ENSG00000109270|Q9UHA4-2|LAMTOR3	nc|ENSG00000109270|Q9UHA4-2|LAMTOR3	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.8109741210938	2	522.813659	1043.61277	-1.5564	-0.0008137	2.738	0.0014315	1.1817	0.00061779	522.8149876430004	120.2	0.83701	118.86	118.56	119.4	-1.3444					34	15	3	0	0	0	0.33652	1	11296	11296		58.782	11.125	1	73199			41227	2706	34022	34046	44652	44652					0.09270326093883341
NRLQQELD	8	Unmodified	_NRLQQELD_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11;ENST00000488329.1_1_17:8396030-8397167:-|nuORF;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3173828125	2	508.261988	1014.50942	2.1017	0.0010682	4.3413	0.0022065	6.443	0.0032747	508.26393620934664	108.47	0.43398	108.47	108.32	108.76	0					13	9	2	0	0	0	0.028476	1	12247	12247		53.351	29.149	1	84133			41228	15021;4218	34023	34047	44653	44653					0.0027479391541191944
NRLREEHIRV	10	Unmodified	_NRLREEHIRV_					0	0	0		nc|ENSG00000206384|A6NMZ7-2|COL6A6;ENSG00000206384|ENST00000358511|COL6A6	nc|ENSG00000206384|A6NMZ7-2|COL6A6	nc|ENSG00000206384|A6NMZ7-2|COL6A6	MULTI-MSMS	OvCa9_classI_Rep3	3	441.2545471191406	3	441.253098	1320.73747	1.4046	0.00061976	1.5937	0.00070321	2.9982	0.001323	441.2537172485591	65.982	1.8287	63.036	62.554	64.383	-2.9459					68	35	4	0	0	0	0.7855	1	2695	2695		20.837	4.3073	1	107960			41229	9097	34024	34048	44654	44654					0.08992591563105634
NRLRRKTKR	9	Unmodified	_NRLRRKTKR_					0	0	0			REV__nc|ENSG00000138468|Q9BQF6-4|SENP7	REV__nc|ENSG00000138468|Q9BQF6-4|SENP7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	410.22821044921875	3	409.933811	1226.7796	1.8043	0.00073963	-0.010813	-4.4326E-06	1.7935	0.0007352	409.93380613051	37.165	1.048	34.272	34.092	35.14	-2.8925					40	20	3	0	0	0	0.027462	1	1426	1426		14.137	0	1	59545	+		41230	19542	34025	34049	44655	44655					0.17528611762145374
NRLSDLQPQ	9	Unmodified	_NRLSDLQPQ_					0	0	0		ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532-4|DMD;DMD|p.I1389*|1|0.08|ENSG00000198947|chrX:32411819-32411820|AT/-|frameshift_variant	ENSG00000198947|ENST00000357033|DMD	ENSG00000198947|ENST00000357033|DMD	MULTI-MSMS	OvCa99_classI_Rep5	1	536.2847290039062	2	535.783087	1069.55162	0.83135	0.00044543	-2.0157	-0.00108	-1.1843	-0.00063455	535.7818177473005	158.44	0.40807	158.44	158.15	158.56	0					14	8	2	0	0	0	0.53483	1	18573	18573		39.253	1.4413	1	50461			41231	8914	34026	34050	44656	44656					0.01962769323813518
NRLSELFNV	9	Unmodified	_NRLSELFNV_					0	0	0			REV__tr|A0A7D6ZV77|A0A7D6ZV77_9CLOTProlineiminopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02825PE=3SV=1	REV__tr|A0A7D6ZV77|A0A7D6ZV77_9CLOTProlineiminopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02825PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.3479614257812	2	546.29583	1090.57711	0.15707	8.5808E-05	-0.2353	-0.00012854	-0.078229	-4.2736E-05	546.2953925245102	57.939	0.37822	57.939	57.775	58.153	0					15	8	2	0	0	0	0.027462	1	4916	4916		30.318	5.1917	1	384800	+		41232	32242	34027	34051	44657	44657					0.03544243846204154
NRLSRLAR	8	Unmodified	_NRLSRLAR_					0	0	0		ENST00000469172.5_1_10:70091618-70091822:+|nuORF	ENST00000469172.5_1_10:70091618-70091822:+|nuORF	ENST00000469172.5_1_10:70091618-70091822:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.27825927734375	2	493.304324	984.594095	1.3751	0.00067832	-4.0775	-0.0020114	-2.7024	-0.0013331	493.30229444964544	83.711	0.97112	83.711	83.249	84.22	0					54	22	3	0	0	0	0.028476	1	8694	8694		30.504	3.7075	1	1270300			41233	12343	34028	34052	44658	44658					0.10118209242682497
NRLSVLLNL	9	Unmodified	_NRLSVLLNL_					0	0	0		ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	ENSG00000198952|ENST00000361813|SMG5	MULTI-MSMS	OvCa99_classI_Rep5	1	521.3260498046875	2	521.324391	1040.63423	1.0111	0.00052713	0.59501	0.00031019	1.6061	0.00083732	521.324715921044	78.903	0.65704	78.903	78.583	79.24	0					56	15	4	0	0	0	0.28934	1	8032	8032		64.207	0.67341	1	24130000			41234	8916	34029	34053	44659	44659					0.11553711122587629
NRLVRDNKIK	10	Unmodified	_NRLVRDNKIK_					0	0	0			REV__tr|A0A7D6VZL4|A0A7D6VZL4_9CLOTDotUfamilytypeIV/VIsecretionsystemproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20715PE=4SV=1	REV__tr|A0A7D6VZL4|A0A7D6VZL4_9CLOTDotUfamilytypeIV/VIsecretionsystemproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20715PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	628.3822021484375	2	628.383303	1254.75205	-4.0512	-0.0025457	2.8064	0.0017635	-1.2447	-0.00078217	628.3849132400738	150.53	4.7174	149.58	148	152.71	-0.95647					178	94	2	0	0	0	0.73378	1	12921	12921		26.693	4.1133	1	419100	+		41235	31839	34030	34054	44660	44660					0.13486663711250912
NRMDIEPKTV	10	Unmodified	_NRMDIEPKTV_					0	0	0			REV__tr|A0A553SF89|A0A553SF89_NIACIPeptidaseC45OS=NialliacirculansOX=1397GN=CEQ21_08450PE=4SV=1	REV__tr|A0A553SF89|A0A553SF89_NIACIPeptidaseC45OS=NialliacirculansOX=1397GN=CEQ21_08450PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	402.25738525390625	3	401.544779	1201.61251	0.70433	0.00028282	-3.1433	-0.0012622	-2.4389	-0.00097934	401.54343563360123	63.903	0.88737	61.159	60.638	61.525	-2.7444					30	16	3	0	0	0	0.027089	1	4805	4805		25.126	0	1	34797	+		41236	29549	34031	34055	44661	44661					0.019765383117146484
NRNELPLLN	9	Unmodified	_NRNELPLLN_					0	0	0			REV__tr|A0A553SLL6|A0A553SLL6_NIACIXREfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_20740PE=4SV=1	REV__tr|A0A553SLL6|A0A553SLL6_NIACIXREfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_20740PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.73876953125	2	541.80128	1081.58801	-2.1173	-0.0011471	1.4936	0.00080923	-0.62366	-0.0003379	542.3021777395552	107.16	0.73506	105.28	104.91	105.64	-1.8785					19	11	2	0	0	0	0.027462	1	9786	9786		37.812	20.447	1	45579	+		41237	30238	34032	34056	44662	44662					0.050476462205324424
NRNELPLLN	9	Unmodified	_NRNELPLLN_					0	0	0			REV__tr|A0A553SLL6|A0A553SLL6_NIACIXREfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_20740PE=4SV=1	REV__tr|A0A553SLL6|A0A553SLL6_NIACIXREfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_20740PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	541.80128	1081.58801	-0.9229	-0.00050003	3.5164	0.0019052	2.5935	0.0014051	541.8034323523893	105.54	0.9484	105.11	104.75	105.7	-0.43642	-0.11266	0.00087627	NaN	37.812	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26963	+		41238	30238	34032	34056							0.050476462205324424
NRNELPLLN	9	Unmodified	_NRNELPLLN_					0	0	0			REV__tr|A0A553SLL6|A0A553SLL6_NIACIXREfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_20740PE=4SV=1	REV__tr|A0A553SLL6|A0A553SLL6_NIACIXREfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_20740PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	541.80128	1081.58801	0.83669	0.00045332	0.82888	0.00044909	1.6656	0.00090241	542.3024298560965	106.54	0.75906	105.28	104.96	105.71	-1.267	0.054543	-0.0020359	NaN	37.812	17	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37239	+		41239	30238	34032	34056							0.050476462205324424
NRNQGLNRL	9	Unmodified	_NRNQGLNRL_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89971082-89977643:+|nuORF;ENST00000564957.5_1_16:89976319-89977643:+|nuORF;ENST00000565860.1_1_16:89976708-89977643:+|nuORF;ENST00000263347.11_1_16:89973678-89977643:+|nuORF	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-MSMS	OvCa99_classI_Rep5	1	542.8018188476562	2	542.802146	1083.58974	-0.64374	-0.00034943	0.20186	0.00010957	-0.44188	-0.00023985	542.8021562660439	37.843	0.81891	37.843	37.621	38.44	0					31	14	4	0	0	0	0.10363	1	2100	2100		96.19	10.831	1	1285000			41240	4889	34033	34057	44663	44663					0.05128700029126776
NRNQITNIK	9	Unmodified	_NRNQITNIK_					0	0	0			REV__tr|A0A7D6ZRG3|A0A7D6ZRG3_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03695PE=4SV=1	REV__tr|A0A7D6ZRG3|A0A7D6ZRG3_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03695PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.81494140625	2	550.812179	1099.60981	2.7827	0.0015327	3.9631	0.0021829	6.7458	0.0037157	551.3167561326678	135.26	0.64354	133.72	133.36	134.01	-1.5437					34	12	4	0	0	0	0.46356	1	13089	13089		45.972	5.9141	1	40491	+		41241	32159	34034	34058	44664	44664					0.06398450969072655
NRNQITNIK	9	Unmodified	_NRNQITNIK_					0	0	0			REV__tr|A0A7D6ZRG3|A0A7D6ZRG3_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03695PE=4SV=1	REV__tr|A0A7D6ZRG3|A0A7D6ZRG3_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03695PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	550.812179	1099.60981	0.63375	0.00034907	6.3042	0.0034724	6.938	0.0038215	551.3186610211721	134.17	0.68539	133.94	133.71	134.39	-0.22696	0.11252	0.0013717	NaN	45.972	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26804	+		41242	32159	34034	34058							0.06398450969072655
NRNRMLCQQ	9	Oxidation (M)	_NRNRM(Oxidation (M))LCQQ_		NRNRM(1)LCQQ		NRNRM(44)LCQQ	0	0	1			REV__ENST00000542357.1_1_12:6747897-6752833:-|nuORF	REV__ENST00000542357.1_1_12:6747897-6752833:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	589.7785034179688	2	589.779499	1177.54444	0.18372	0.00010835	-0.84438	-0.000498	-0.66066	-0.00038965	589.7789289906962	126.64	1.831	125.57	124.92	126.75	-1.0715					52	34	2	0	0	0	0.48324	1	9902	9902		44.117	6.3053	1	186880	+		41243	18042	34035	34059	44665	44665		415			-0.03722609819919853
NRNRMLCQQ	9	Oxidation (M)	_NRNRM(Oxidation (M))LCQQ_					0	0	1			REV__ENST00000542357.1_1_12:6747897-6752833:-|nuORF	REV__ENST00000542357.1_1_12:6747897-6752833:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	589.779499	1177.54444	0.31168	0.00018382	-1.0121	-0.00059689	-0.70039	-0.00041307	589.7787271785925	125.98	1.2829	125.75	125.31	126.59	-0.23589	0.14464	-0.001019	NaN	44.117	39	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98267	+		41244	18042	34035	34059				415			-0.03722609819919853
NRPEFITEF	9	Unmodified	_NRPEFITEF_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OvCa9_classI_Rep2	2	576.7877807617188	2	576.787838	1151.56112	-1.6179	-0.00093316	1.0884	0.00062778	-0.52945	-0.00030538	576.7882490180596	102.71	1.5291	102.02	101.74	103.27	-0.68459					67	30	3	0	0	0	0.094616	2	9463	9463;9468		98.629	34.422	1	381850			41245	1212	34036	34060	44666;44667	44666					-0.008594623906901688
NRPEFITEF	9	Unmodified	_NRPEFITEF_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OvCa9_classI_Rep4_	4	576.78759765625	2	576.787838	1151.56112	-0.96119	-0.00055441	0.72372	0.00041743	-0.23747	-0.00013697	576.788133793315	104.17	1.2486	102.05	101.8	103.05	-2.1192					67	23	3	0	0	0	0.13504	2	9436	9426;9436		87.696	24.39	1	416140			41246	1212	34036	34060	44668;44669	44669					-0.008594623906901688
NRPEKGEEEQ	10	Unmodified	_NRPEKGEEEQ_					0	0	0			REV__ENST00000504861.2_1_8:93728183-93798243:-|nuORF	REV__ENST00000504861.2_1_8:93728183-93798243:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.89154052734375	3	405.858191	1214.55274	1.2685	0.00051482	0.10589	4.2976E-05	1.3744	0.0005578	405.85828221260505	46.786	1.0091	46.786	46.284	47.294	0					32	22	2	0	0	0	0.027062	1	3284	3284		20.03	0	1	158960	+		41247	26865	34037	34061	44670	44670					-0.04595061097938924
NRPGTVSSL	9	Unmodified	_NRPGTVSSL_					0	0	0		ENSG00000124795|ENST00000652689|DEK;nc|ENSG00000124795|P35659-2|DEK	ENSG00000124795|ENST00000652689|DEK	ENSG00000124795|ENST00000652689|DEK	MULTI-MSMS	OvCa9_classI_Rep2	2	465.7535095214844	2	465.753798	929.493044	-1.2301	-0.00057294	1.3198	0.00061471	0.089691	4.1774E-05	465.75419468883024	53.253	1.3401	50.439	50.034	51.375	-2.8139					44	26	2	0	0	0	0.38969	1	3589	3589		52.937	5.0211	1	105290			41248	3682	34038	34062	44671	44671					0.025477127493331864
NRPGTVSSL	9	Unmodified	_NRPGTVSSL_					0	0	0		ENSG00000124795|ENST00000652689|DEK;nc|ENSG00000124795|P35659-2|DEK	ENSG00000124795|ENST00000652689|DEK	ENSG00000124795|ENST00000652689|DEK	MULTI-MSMS	OvCa9_classI_Rep2	2	465.7532653808594	2	465.753798	929.493044	-0.66211	-0.00030838	0.59578	0.00027749	-0.066328	-3.0893E-05	465.7539083170596	59.929	2.3565	57.159	56.567	58.924	-2.7702					98	44	5	0	0	0	0.091859	1	4383	4383		99.375	0.74558	1	1317300			41249	3682	34038	34062	44672	44672					0.025477127493331864
NRPGTVSSL	9	Unmodified	_NRPGTVSSL_					0	0	0		ENSG00000124795|ENST00000652689|DEK;nc|ENSG00000124795|P35659-2|DEK	ENSG00000124795|ENST00000652689|DEK	ENSG00000124795|ENST00000652689|DEK	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.75494384765625	2	465.753798	929.493044	0.23003	0.00010714	-0.19879	-9.2588E-05	0.031237	1.4549E-05	465.75350138597	60.501	2.8311	57.071	56.553	59.384	-3.43					108	57	4	0	0	0	0.074342	1	4123	4123		104.75	0.68976	1	6166000			41250	3682	34038	34062	44673	44673					0.025477127493331864
NRPGVLRISR	10	Unmodified	_NRPGVLRISR_					0	0	0			REV__ENSG00000196074|ENST00000357552|SYCP2	REV__ENSG00000196074|ENST00000357552|SYCP2	MULTI-MSMS	OvCa9_classI_Rep3	3	584.3560791015625	2	584.357088	1166.69962	-4.6254	-0.0027029	3.4374	0.0020087	-1.1881	-0.00069425	584.3589865391973	145.25	4.5766	144.28	142.9	147.48	-0.97299					233	91	4	0	0	0	0.79917	1	12163	12163		19.104	0.84144	1	156220	+		41251	22780	34039	34063	44674	44674					0.12294125368293862
NRPIGKPN	8	Unmodified	_NRPIGKPN_					0	0	0			REV__ENST00000366794.9_1_1:226570843-226573334:-|nuORF	REV__ENST00000366794.9_1_1:226570843-226573334:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	448.25830078125	2	448.259051	894.503549	0.91253	0.00040905	-0.89413	-0.0004008	0.018403	8.2495E-06	448.25856617736815	142.24	1.5311	142.01	141.52	143.05	-0.22696					82	30	4	0	0	0	0.75241	1	14244	14244		25.45	2.4077	1	131560	+		41252	24886	34040	34064	44675	44675					0.05207740194418875
NRPKFLNAL	9	Unmodified	_NRPKFLNAL_					0	0	0		nc|ENSG00000198130|Q6NVY1-2|HIBCH;ENSG00000198130|ENST00000359678|HIBCH	nc|ENSG00000198130|Q6NVY1-2|HIBCH	nc|ENSG00000198130|Q6NVY1-2|HIBCH	MULTI-MSMS	OvCa99_classI_Rep5	1	536.8197021484375	2	536.816733	1071.61891	2.5653	0.0013771	-1.0325	-0.00055427	1.5328	0.00082285	536.8159528785275	75.819	0.63679	75.819	75.601	76.238	0					35	15	4	0	0	0	0.31747	1	7567	7567		60.972	5.4677	1	3581900			41253	8788	34041	34065	44676	44676					0.08596844325415987
NRPKTEGRS	9	Unmodified	_NRPKTEGRS_					0	0	0		ZFYVE9|p.C361Rfs*31|1|0.03|ENSG00000157077|chr1:52238497-52238498|-/AGGCA|frameshift_variant;nc|ENSG00000157077|O95405-3|ZFYVE9;ENST00000361625.5_1_1:52698878-52729552:+|nuORF;nc|ENSG00000157077|O95405-2|ZFYVE9;ENSG00000157077|ENST00000287727|ZFYVE9	ZFYVE9|p.C361Rfs*31|1|0.03|ENSG00000157077|chr1:52238497-52238498|-/AGGCA|frameshift_variant	ZFYVE9|p.C361Rfs*31|1|0.03|ENSG00000157077|chr1:52238497-52238498|-/AGGCA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.7850341796875	2	522.780879	1043.5472	-0.27382	-0.00014315	1.7886	0.00093504	1.5148	0.00079189	522.7816778535876	75.489	1.4852	72.55	72.065	73.55	-2.9389					57	30	3	0	0	0	0.13504	1	5974	5974		87.696	12.653	1	553610			41254	5872	34042	34066	44677	44677					0.027173049008979433
NRPPSALPL	9	Unmodified	_NRPPSALPL_					0	0	0		ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7;ENST00000537641.5_1_11:61183575-61183878:-|nuORF	ENSG00000149532|ENST00000439958|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	MULTI-MSMS	OvCa9_classI_Rep3	3	482.7831726074219	2	482.782359	963.550165	-0.22965	-0.00011087	-0.2465	-0.000119	-0.47615	-0.00022988	482.78215102086523	80.677	1.8812	78.355	77.827	79.708	-2.3226					87	36	4	0	0	0	0.27001	1	4437	4437		66.429	9.7082	1	559620			41255	5467	34043	34067	44678	44678					0.06693180025706624
NRPQWQTV	8	Unmodified	_NRPQWQTV_					0	0	0			REV__ENSG00000100109|ENST00000407690|TFIP11	REV__ENSG00000100109|ENST00000407690|TFIP11	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.3003540039062	2	514.76724	1027.51993	0.70709	0.00036399	0.44463	0.00022888	1.1517	0.00059287	514.7672594413415	81.108	0.6329	81.108	80.615	81.248	0					26	14	3	0	0	0	0.028476	1	8339	8339		26.693	0	1	582930	+		41256	17368	34044	34068	44679	44679					0.0072682136051298585
NRPSTPRLV	9	Unmodified	_NRPSTPRLV_					0	0	0			REV__HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|125|3|sense	REV__HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|125|3|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	520.30322265625	2	520.30399	1038.59343	0.87613	0.00045586	-1.227	-0.00063843	-0.35091	-0.00018258	520.3032319005173	43.248	1.2895	40.538	40.213	41.502	-2.7097					78	25	5	0	0	0	0.57283	1	2399	2399		35.152	2.3396	1	428250	+		41257	28237	34045	34069	44680	44680					0.0756736980297319
NRPWGLVSL	9	Unmodified	_NRPWGLVSL_					0	0	0		ENSG00000107951|ENST00000263063|MTPAP;nc|ENSG00000107951|Q9NVV4-2|MTPAP;ENST00000488290.5_1_10:30602540-30654262:-|nuORF	ENSG00000107951|ENST00000263063|MTPAP	ENSG00000107951|ENST00000263063|MTPAP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.7680053710938	2	521.295633	1040.57671	-0.63005	-0.00032844	0.82393	0.00042951	0.19389	0.00010107	521.2955954402195	77.445	1.4051	74.629	74.244	75.649	-2.8165					51	28	3	0	0	0	0.027455	1	6200	6200		42.396	3.59	1	307460			41258	2629	34046	34070	44681	44681					0.0580486891703913
NRQKRTQLSK	10	Unmodified	_NRQKRTQLSK_					0	0	0			REV__ENSG00000165923|ENST00000525123|AGBL2	REV__ENSG00000165923|ENST00000525123|AGBL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.8983459472656	3	420.249465	1257.72657	-0.24614	-0.00010344	4.2623	0.0017912	4.0162	0.0016878	420.2515037160419	59.859	0.66566	59.859	59.414	60.079	0					23	16	2	0	0	0	0.026975	1	5202	5202		31.634	4.8846	1	374750	+		41259	21139	34047	34071	44682	44682					0.10801189188850913
NRQPLSLDPP	10	Unmodified	_NRQPLSLDPP_					0	0	0			REV__ENST00000525653.1_1_1:70820542-70820707:+|nuORF	REV__ENST00000525653.1_1_1:70820542-70820707:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	568.8094482421875	2	568.806562	1135.59857	1.116	0.00063479	2.1818	0.001241	3.2978	0.0018758	568.807870244778	126.33	1.1001	125.26	125.07	126.17	-1.0715					36	20	2	0	0	0	0.45225	1	9866	9866		60.972	2.19	1	58868	+		41260	27116	34048	34072	44683	44683					0.03619628874935188
NRQVATALPL	10	Unmodified	_NRQVATALPL_					0	0	0		ENSG00000198829|ENST00000362032|SUCNR1	ENSG00000198829|ENST00000362032|SUCNR1	ENSG00000198829|ENST00000362032|SUCNR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.289794921875	2	541.819473	1081.62439	2.368	0.001283	3.9089	0.0021179	6.2769	0.003401	541.821561818699	120.94	0.44698	120.94	120.74	121.19	0					13	9	2	0	0	0	0.026849	1	13911	13911		40.778	1.5253	1	118530			41261	8885	34049	34073	44684	44684					0.08684523117221943
NRRELPLN	8	Unmodified	_NRRELPLN_					0	0	0			REV__ENSG00000113328|ENST00000340828|CCNG1	REV__ENSG00000113328|ENST00000340828|CCNG1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.3427734375	2	506.28834	1010.56213	2.6846	0.0013592	0.46849	0.00023719	3.1531	0.0015964	506.28847039333994	134.8	0.84161	133.25	132.87	133.71	-1.5437					22	16	2	0	0	0	0.028476	1	13085	13085		19.36	0	1	19384	+		41262	18146	34050	34074	44685	44685					0.05726796768897202
NRRETERIRKK	11	Unmodified	_NRRETERIRKK_					0	0	0		ENST00000563330.1_1_15:32907434-32908123:+|nuORF;ENST00000361627.7_2_15:32907955-32908120:+|nuORF	ENST00000563330.1_1_15:32907434-32908123:+|nuORF	ENST00000563330.1_1_15:32907434-32908123:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	495.9584655761719	3	495.962207	1484.86479	-6.9468	-0.0034453	-0.084622	-4.1969E-05	-7.0314	-0.0034873	495.96210445138047	163.05	2.2058	161.66	160.17	162.38	-1.3926					163	48	5	0	0	0	0.72516	1	14260	14260		13.508	3.8618	1	227040			41263	10801	34051	34075	44686	44686					0.14175312437305365
NRRFHFPI	8	Unmodified	_NRRFHFPI_					0	0	0		LPAR1|p.Y75C|1|0.43|ENSG00000198121|chr9:110941990-110941990|T/C|missense_variant;ENST00000541779.5_1_9:113704224-113704290:-|nuORF;ENSG00000198121|ENST00000683809|LPAR1;nc|ENSG00000198121|Q92633-2|LPAR1	LPAR1|p.Y75C|1|0.43|ENSG00000198121|chr9:110941990-110941990|T/C|missense_variant	LPAR1|p.Y75C|1|0.43|ENSG00000198121|chr9:110941990-110941990|T/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.3269653320312	2	543.801417	1085.58828	-0.6743	-0.00036669	-0.35376	-0.00019237	-1.0281	-0.00055906	543.8026821889121	61.633	0.57943	61.633	61.374	61.953	0					31	13	3	0	0	0	0.028476	1	5483	5483		33.516	0	1	888480			41264	8787	34052	34076	44687	44687					0.048911107310459556
NRRIVWNK	8	Unmodified	_NRRIVWNK_					0	0	0		HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|5|1|sense	HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|5|1|sense	HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|5|1|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.319091796875	2	543.319974	1084.6254	0.23976	0.00013027	-3.9708	-0.0021574	-3.7311	-0.0020272	543.3177057743393	34.411	1.1529	31.623	31.349	32.502	-2.7881					48	22	3	0	0	0	0.73626	1	1011	1011		33.516	4.366	1	218380			41265	14496	34053	34077	44688	44688					0.08646782276787235
NRRLKRENRSL	11	Unmodified	_NRRLKRENRSL_					0	0	0		ENSG00000198680|ENST00000358022|TUSC1	ENSG00000198680|ENST00000358022|TUSC1	ENSG00000198680|ENST00000358022|TUSC1	MULTI-MSMS	OvCa9_classI_Rep3	3	481.2823181152344	3	481.286802	1440.83858	-6.6786	-0.0032143	-0.11204	-5.3925E-05	-6.7906	-0.0032682	481.2868612614486	161.01	3.7232	159.65	158.49	162.21	-1.3523					206	77	3	0	0	0	0.72297	1	13903	13903		21.78	8.2725	1	127690			41266	8847	34054	34078	44689	44689					0.13579043265849577
NRRLLCNSAK	10	Unmodified	_NRRLLCNSAK_					0	0	0			REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|144|1|anti-sense	REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|144|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.7758178710938	2	587.827306	1173.64006	-0.94272	-0.00055416	-0.86256	-0.00050704	-1.8053	-0.0010612	587.827051444874	36.506	0.22436	36.506	36.351	36.575	0					9	4	3	0	0	0	0.026915	1	1912	1912		35.618	16.258	1	53761	+		41267	28258	34055	34079	44690	44690					0.060184863626318474
NRRLTEGPL	9	Unmodified	_NRRLTEGPL_					0	0	0			REV__ENST00000506763.5_1_4:2242801-2243443:-|nuORF	REV__ENST00000506763.5_1_4:2242801-2243443:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	528.3028564453125	2	528.301447	1054.58834	0.68567	0.00036224	1.9324	0.0010209	2.618	0.0013831	528.3026828167966	158.35	0.549	158.35	157.96	158.51	0					16	11	2	0	0	0	0.40667	1	18549	18549		51.335	8.9393	1	84763	+		41268	26890	34056	34080	44691	44691					0.06323065940387096
NRRQRQVLVFF	11	Unmodified	_NRRQRQVLVFF_					0	0	0		ENSG00000272674|ENST00000609684|PCDHB16	ENSG00000272674|ENST00000609684|PCDHB16	ENSG00000272674|ENST00000609684|PCDHB16	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.6606750488281	3	488.28451	1461.8317	1.0153	0.00049577	-2.7617	-0.0013485	-1.7464	-0.00085274	488.28193092866394	37.331	0.99816	34.438	34.043	35.041	-2.8925					54	19	4	0	0	0	0.026344	1	1347	1347		9.6461	0	1	79275			41269	9554	34057	34081	44692	44692					0.11925730385246425
NRRRFLLD	8	Unmodified	_NRRRFLLD_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3165283203125	2	545.317432	1088.62031	-1.7047	-0.0009296	0.076343	4.1631E-05	-1.6283	-0.00088797	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.74971	1	14308	14308		26.796	3.7536	1	202430			41270	1548	34058	34082	44693	44693					0.07954478414194455
NRSPCVPPA	9	Carbamidomethyl (C)	_NRSPC(Carbamidomethyl (C))VPPA_	NRSPC(1)VPPA		NRSPC(48)VPPA		0	1	0		ENSG00000185133|ENST00000331075|INPP5J	ENSG00000185133|ENST00000331075|INPP5J	ENSG00000185133|ENST00000331075|INPP5J	MULTI-MSMS	OvCa99_classI_Rep5	1	499.2501525878906	2	499.247826	996.481099	0.74535	0.00037211	2.458	0.0012272	3.2034	0.0015993	499.2485983298839	158.11	1.5358	158.11	157.65	159.19	0					84	31	4	0	0	0	0.44294	1	18556	18556		47.916	8.6628	1	141510			41271	8228	34059	34083	44694	44694	83				-0.01728227265505211
NRSRVHLD	8	Unmodified	_NRSRVHLD_					0	0	0			REV__ENST00000521308.5_1_5:150563000-150603580:-|nuORF	REV__ENST00000521308.5_1_5:150563000-150603580:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.3341064453125	2	498.770314	995.526075	1.8139	0.0009047	-0.82099	-0.00040949	0.99286	0.00049521	498.7699106159634	137.37	0.94975	135.83	135.52	136.47	-1.5437					44	19	3	0	0	0	0.028476	1	13354	13354		51.335	10.763	1	57779	+		41272	23036	34060	34084	44695	44695					0.028133395920349358
NRSTSLVSKLG	11	Unmodified	_NRSTSLVSKLG_					0	0	0			REV__nc|ENSG00000116698|Q92540-4|SMG7	REV__nc|ENSG00000116698|Q92540-4|SMG7	MULTI-MSMS	OvCa9_classI_Rep4_	4	581.3344116210938	2	581.332944	1160.65134	-0.53818	-0.00031286	1.0598	0.00061609	0.5216	0.00030323	581.3334660397742	47.599	1.1625	44.491	44.185	45.348	-3.1077					85	22	5	0	0	0	0.7046	1	2572	2572		28.081	0.19925	1	611370	+		41273	28813	34061	34085	44696	44696					0.07743586937749569
NRTDVVLIL	9	Unmodified	_NRTDVVLIL_					0	0	0		ENST00000558482.5_1_15:64221904-64332460:-|nuORF;ENSG00000035664|ENST00000457488|DAPK2;nc|ENSG00000035664|Q9UIK4-2|DAPK2	ENST00000558482.5_1_15:64221904-64332460:-|nuORF	ENST00000558482.5_1_15:64221904-64332460:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	521.8161010742188	2	521.816399	1041.61824	0.45107	0.00023538	-0.20287	-0.00010586	0.2482	0.00012951	521.8161309836105	110.4	1.9235	110.23	109.86	111.78	-0.17237					90	38	4	0	0	0	0.10363	2	10390	10385;10390		96.19	10.949	1	440840			41274	1082	34062	34086	44697;44698	44698					0.09910004885728085
NRTLPLEAL	9	Unmodified	_NRTLPLEAL_					0	0	0		ENST00000447221.1_1_9:139621222-139621420:-|nuORF	ENST00000447221.1_1_9:139621222-139621420:-|nuORF	ENST00000447221.1_1_9:139621222-139621420:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.798828125	2	513.800749	1025.58694	0.45399	0.00023326	-3.4555	-0.0017754	-3.0015	-0.0015422	513.7987957920849	32.115	0.81847	29.42	28.786	29.605	-2.6954					76	29	3	0	0	0	0.68424	1	718	718		21.96	1.013	1	87672			41275	12005	34063	34087	44699	44699					0.07517431851601941
NRTRLAKL	8	Unmodified	_NRTRLAKL_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;HSP90B1|p.I687Vfs*9|1|0.07|ENSG00000166598|chr12:103946648-103946649|-/GTGCTCCAGGTACTTGGGACTC|frameshift_variant;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000551983.1_1_12:104335630-104337190:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.3108215332031	2	486.309075	970.603597	-0.36957	-0.00017972	3.0572	0.0014867	2.6876	0.001307	486.3104765659595	123.79	1.1064	122.4	122.13	123.23	-1.3908					51	21	3	0	0	0	0.6345	1	11736	11736		56.721	10.769	1	188920			41276	6697	34064	34088	44700	44700					0.11711977528227635
NRTWYPEV	8	Unmodified	_NRTWYPEV_					0	0	0		ENSG00000123838|ENST00000367070|C4BPA	ENSG00000123838|ENST00000367070|C4BPA	ENSG00000123838|ENST00000367070|C4BPA	MULTI-MSMS	OvCa9_classI_Rep3	3	532.7640991210938	2	532.761623	1063.50869	1.0391	0.00055361	1.7492	0.00093191	2.7883	0.0014855	532.7625453162051	119.44	1.5811	118.41	117.88	119.46	-1.0271					87	31	5	0	0	0	0.70469	1	9104	9104		42.396	5.237	1	495830			41277	3615	34065	34089	44701	44701					-0.020520007336244817
NRVICRGACR	10	Unmodified	_NRVICRGACR_					0	0	0			REV__ENST00000361828.6_1_3:193413749-193413833:+|nuORF	REV__ENST00000361828.6_1_3:193413749-193413833:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	574.3013305664062	2	574.300401	1146.58625	-0.32228	-0.00018508	1.1619	0.0006673	0.83966	0.00048221	574.3012965384783	30.687	0.83693	27.977	27.804	28.641	-2.7097					34	16	3	0	0	0	0.65434	1	855	855		35.618	0	1	116960	+		41278	24866	34066	34090	44702	44702					0.018819906592625557
NRVIFLETL	9	Unmodified	_NRVIFLETL_					0	0	0			REV__tr|A0A553SHU1|A0A553SHU1_NIACIFUSCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_13515PE=3SV=1	REV__tr|A0A553SHU1|A0A553SHU1_NIACIFUSCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_13515PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.2687377929688	2	552.824224	1103.63389	0.021785	1.2043E-05	-2.2779	-0.0012593	-2.2561	-0.0012472	552.8241628795067	75.053	0.2378	71.822	71.726	71.963	-3.2308					7	4	2	0	0	0	0.027462	1	5901	5901		29.15	8.2026	1	16933	+		41279	29839	34067	34091	44703	44703					0.08622291402775772
NRVIFLETL	9	Unmodified	_NRVIFLETL_					0	0	0			REV__tr|A0A553SHU1|A0A553SHU1_NIACIFUSCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_13515PE=3SV=1	REV__tr|A0A553SHU1|A0A553SHU1_NIACIFUSCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_13515PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	552.824224	1103.63389	-0.73617	-0.00040697	2.3164	0.0012806	1.5803	0.0008736	552.8262527519357	74.267	0.64359	71.835	71.477	72.121	-2.4322	0.0062984	0.002764	NaN	34.173	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16494	+		41280	29839	34067	34091							0.08622291402775772
NRVIKKLKDRA	11	Unmodified	_NRVIKKLKDRA_					0	0	0		tr|A0A7D7A3A4|A0A7D7A3A4_9CLOTPHdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22945PE=4SV=1	tr|A0A7D7A3A4|A0A7D7A3A4_9CLOTPHdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22945PE=4SV=1	tr|A0A7D7A3A4|A0A7D7A3A4_9CLOTPHdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22945PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	447.760986328125	3	447.62101	1339.8412	-0.56708	-0.00025384	3.9851	0.0017838	3.418	0.00153	447.9581704250004	41.617	0.3605	38.636	38.388	38.748	-2.9804					10	6	2	0	0	0	0.026324	1	1855	1855		11.932	6.2336	1	10459			41281	36110	34068	34092	44704	44704					0.18487498670788227
NRVLIKSTT	9	Unmodified	_NRVLIKSTT_					0	0	0			REV__ENSG00000122965|ENST00000261741|RBM19	REV__ENSG00000122965|ENST00000261741|RBM19	MULTI-MSMS	OvCa9_classI_Rep2	2	516.3139038085938	2	516.314023	1030.61349	-4.2539	-0.0021964	4.0398	0.0020858	-0.21417	-0.00011058	516.3160035152533	156.4	1.1562	156.18	155.89	157.05	-0.22696					77	28	5	0	0	0	0.69123	1	15903	15903		20.947	4.4738	1	397210	+		41282	18617	34069	34093	44705	44705					0.09941120742928433
NRVVTEVAIV	10	Unmodified	_NRVVTEVAIV_					0	0	0		tr|A0A7D6ZRQ2|A0A7D6ZRQ2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13105PE=4SV=1	tr|A0A7D6ZRQ2|A0A7D6ZRQ2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13105PE=4SV=1	tr|A0A7D6ZRQ2|A0A7D6ZRQ2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13105PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	550.3278198242188	2	550.327131	1098.63971	-1.5395	-0.00084725	0.74414	0.00040952	-0.79539	-0.00043772	550.3275660732565	84.687	1.7638	82.426	81.881	83.645	-2.261					107	35	5	0	0	0	0.49558	1	4909	4909		54.776	5.2403	1	1227100			41283	35719	34070	34094	44706	44706					0.09433389914420331
NRWSKFKKMWK	11	Unmodified	_NRWSKFKKMWK_					0	0	0		DLX2|p.R204W|1|0.46|ENSG00000115844|chr2:172100920-172100920|G/A|missense_variant	DLX2|p.R204W|1|0.46|ENSG00000115844|chr2:172100920-172100920|G/A|missense_variant	DLX2|p.R204W|1|0.46|ENSG00000115844|chr2:172100920-172100920|G/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.7884521484375	3	513.618612	1537.83401	-0.56484	-0.00029011	-3.3401	-0.0017155	-3.9049	-0.0020056	513.6169947366728	39.942	0.6605	36.988	36.814	37.474	-2.9541					19	12	2	0	0	0	0.026221	1	1683	1683		25.126	19.427	1	61266			41284	741	34071	34095	44707	44707					0.08660442798691292
NRYADWDSD	9	Unmodified	_NRYADWDSD_					0	0	0			REV__tr|A0A7D6VPT2|A0A7D6VPT2_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12890PE=3SV=1	REV__tr|A0A7D6VPT2|A0A7D6VPT2_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12890PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	571.3433837890625	2	571.230884	1140.44722	-1.0619	-0.00060656	-3.0376	-0.0017351	-4.0994	-0.0023417	571.7310714069407	42.733	0.78659	39.725	39.486	40.273	-3.0074					38	14	4	0	0	0	0.027462	1	2033	2033		37.159	6.8414	1	114550	+		41285	31273	34072	34096	44708	44708					-0.11738977223603797
NRYADWDSD	9	Unmodified	_NRYADWDSD_					0	0	0			REV__tr|A0A7D6VPT2|A0A7D6VPT2_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12890PE=3SV=1	REV__tr|A0A7D6VPT2|A0A7D6VPT2_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12890PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	571.230884	1140.44722	0.1335	7.6259E-05	-4.2004	-0.0023994	-4.0669	-0.0023232	571.7300343901611	42.474	0.49347	39.764	39.571	40.065	-2.7097	0.019475	-0.00084136	NaN	37.159	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21517	+		41286	31273	34072	34096							-0.11738977223603797
NRYDGIYKV	9	Unmodified	_NRYDGIYKV_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1;ENST00000540175.1_1_12:20704556-20705942:+|nuORF;ENST00000431339.1_1_X:73326627-73327404:+|nuORF;ENSG00000147854|ENST00000276893|UHRF2	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-MSMS	OvCa99_classI_Rep5	1	564.2972412109375	2	564.29583	1126.57711	-0.052595	-2.9679E-05	0.19951	0.00011258	0.14691	8.2902E-05	564.2960013831288	61.331	0.68021	61.331	60.984	61.665	0					41	15	4	0	0	0	0.13504	1	5390	5390		87.696	21.267	1	3537400			41287	9576	34073	34097	44709	44709					0.01888243846201476
NRYFRVVLR	9	Unmodified	_NRYFRVVLR_					0	0	0			REV__ENSG00000183856|ENST00000361170|IQGAP3	REV__ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	OvCa99_classI_Rep5	1	408.2452392578125	3	408.243763	1221.70946	1.1026	0.00045015	-1.3155	-0.00053704	-0.21285	-8.6896E-05	408.2432793118589	69.083	1.7129	69.083	68.815	70.528	0					118	41	5	0	0	0	0.28934	1	6538	6538		64.207	4.9426	1	36139000	+		41288	22391	34074	34098	44710	44710					0.10747313373690304
NRYKIIIP	8	Unmodified	_NRYKIIIP_					0	0	0		tr|A0A7D6ZV29|A0A7D6ZV29_9CLOTNucleotidyltransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02180PE=4SV=1	tr|A0A7D6ZV29|A0A7D6ZV29_9CLOTNucleotidyltransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02180PE=4SV=1	tr|A0A7D6ZV29|A0A7D6ZV29_9CLOTNucleotidyltransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02180PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	509.8050842285156	2	508.816202	1015.61785	0.29204	0.0001486	0.21441	0.00010909	0.50645	0.00025769	508.815643207094	112.06	0.34505	111.93	111.68	112.02	-0.12982					9	6	2	0	0	0	0.028476	1	10566	10566		20.482	0	1	6700.6			41289	35789	34075	34099	44711	44711					0.11066629956508223
NRYMNHMQ	8	Unmodified	_NRYMNHMQ_					0	0	0		ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.7947387695312	2	547.236935	1092.45932	-0.74211	-0.00040611	-3.4596	-0.0018932	-4.2017	-0.0022993	547.2348709301792	61.468	0.37158	61.468	61.332	61.704	0					10	8	2	0	0	0	0.028476	1	5413	5413		31.955	17.818	1	225660			41290	6657	34076	34100	44712	44712					-0.08321355285738719
NRYPRKKFW	9	Unmodified	_NRYPRKKFW_					0	0	0		ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	ENSG00000234127|ENST00000454678|TRIM26	MULTI-MSMS	OvCa99_classI_Rep5	1	432.24298095703125	3	432.243763	1293.70946	-0.71327	-0.0003083	0.53768	0.00023241	-0.17558	-7.5894E-05	432.2439509004418	43.623	1.2607	43.623	43.312	44.573	0					88	28	5	0	0	0	0.40667	2	2879	2879;2904		51.335	17.249	1	2818500			41291	9297	34077	34101	44713;44714	44713					0.07435313373684949
NRYVFHIPF	9	Unmodified	_NRYVFHIPF_					0	0	0			REV__nc|ENSG00000101624|Q8TAP6-2|CEP76	REV__nc|ENSG00000101624|Q8TAP6-2|CEP76	MULTI-MSMS	OvCa9_classI_Rep4_	4	596.8187866210938	2	596.816733	1191.61891	-0.18377	-0.00010967	-0.75567	-0.000451	-0.93944	-0.00056067	596.8162215131191	55.836	1.824	52.541	51.906	53.73	-3.2944					104	35	4	0	0	0	0.59983	1	3562	3562		31.955	2.8053	1	1109000	+		41292	17508	34078	34102	44715	44715					0.030768443254146405
NSAAVLRLTG	10	Unmodified	_NSAAVLRLTG_					0	0	0		nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2;GIGYF2|p.R396Hfs*77|1|0.02|ENSG00000204120|chr2:232791349-232791350|-/CATTC|frameshift_variant;ENST00000463554.5_1_2:233599907-233635753:+|nuORF	nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2900085449219	2	501.290548	1000.56654	-1.4695	-0.00073667	1.3149	0.00065914	-0.15466	-7.7529E-05	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.762	1	11130	11130		23.523	0.48021	1	97838			41293	8948	34079	34103	44716	44716					0.06628261191804086
NSAHLLSLL	9	Unmodified	_NSAHLLSLL_					0	0	0			REV__ENSG00000115760|ENST00000421745|BIRC6	REV__ENSG00000115760|ENST00000421745|BIRC6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.7978820800781	2	484.282192	966.549831	0.33095	0.00016027	-0.31014	-0.0001502	0.020805	1.0076E-05	484.281976918503	89.446	0.98983	86.868	86.508	87.498	-2.5777					42	19	3	0	0	0	0.02744	1	7737	7737		52.937	19.421	1	86058	+		41294	18266	34080	34104	44717	44717					0.06521760305861335
NSAHLLSLL	9	Unmodified	_NSAHLLSLL_					0	0	0			REV__ENSG00000115760|ENST00000421745|BIRC6	REV__ENSG00000115760|ENST00000421745|BIRC6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	484.282192	966.549831	1.6347	0.00079167	-1.7456	-0.00084538	-0.11092	-5.3715E-05	484.28127307661595	88.277	1.2286	86.91	86.446	87.675	-1.3676	0.054502	-0.0010741	NaN	36.447	45	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61390	+		41295	18266	34080	34104							0.06521760305861335
NSAHLLSLL	9	Unmodified	_NSAHLLSLL_					0	0	0			REV__ENSG00000115760|ENST00000421745|BIRC6	REV__ENSG00000115760|ENST00000421745|BIRC6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	484.282192	966.549831	-0.68011	-0.00032936	0.7291	0.00035309	0.048991	2.3725E-05	484.28245351007257	88.919	1.1808	86.788	86.413	87.594	-2.1309	-0.067344	0.0013228	NaN	36.447	46	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83001	+		41296	18266	34080	34104							0.06521760305861335
NSAKVDEGL	9	Unmodified	_NSAKVDEGL_					0	0	0		tr|A0A553SQC8|A0A553SQC8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_26100PE=4SV=1	tr|A0A553SQC8|A0A553SQC8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_26100PE=4SV=1	tr|A0A553SQC8|A0A553SQC8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_26100PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.264404296875	2	466.737814	931.461075	-0.78136	-0.00036469	0.12162	5.6763E-05	-0.65974	-0.00030793	466.7380444049359	71.306	0.64207	67.85	67.58	68.222	-3.4563					19	12	2	0	0	0	0.027411	1	5429	5429		37.812	0	1	50377			41297	34147	34081	34105	44718	44718					-0.0073969972447684995
NSALLDFKP	9	Unmodified	_NSALLDFKP_					0	0	0			REV__nc|ENSG00000161813|Q71RC2-2|LARP4	REV__nc|ENSG00000161813|Q71RC2-2|LARP4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.2392272949219	2	502.7742	1003.53385	-1.3279	-0.00066761	-2.9571	-0.0014868	-4.285	-0.0021544	502.7727107910529	46.048	0.46975	42.976	42.613	43.083	-3.0724					11	8	2	0	0	0	0.027462	1	2391	2391		27.882	3.6795	1	12069	+		41298	20710	34082	34106	44719	44719					0.032220540689422705
NSALLDFKP	9	Unmodified	_NSALLDFKP_					0	0	0			REV__nc|ENSG00000161813|Q71RC2-2|LARP4	REV__nc|ENSG00000161813|Q71RC2-2|LARP4	MULTI-MATCH	OvCa99_classI_Rep5	1		2	502.7742	1003.53385	-0.22897	-0.00011512	-10.43	-0.0052441	-10.659	-0.0053592	502.7688800233232	43.191	0.68126	43.191	42.926	43.608	0	0.10776	-0.00084676	NaN	64.207	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	614390	+		41299	20710	34082	34106							0.032220540689422705
NSARKRNK	8	Unmodified	_NSARKRNK_					0	0	0		L1M3_dup291|chr1:173794566-173795729:+|1.281363593639287|0.3648644439828962|1.81|429.0|2|1|sense	L1M3_dup291|chr1:173794566-173795729:+|1.281363593639287|0.3648644439828962|1.81|429.0|2|1|sense	L1M3_dup291|chr1:173794566-173795729:+|1.281363593639287|0.3648644439828962|1.81|429.0|2|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.79083251953125	2	487.286131	972.55771	2.067	0.0010072	1.9214	0.00093627	3.9884	0.0019435	487.28679431607856	77.189	0.71143	77.189	77.002	77.714	0					21	16	2	0	0	0	0.028476	1	7752	7752		23.042	0	1	655490			41300	14552	34083	34107	44720	44720					0.0703333234598631
NSCAMCSLAN	10	Unmodified	_NSCAMCSLAN_					0	0	0		nc|ENSG00000078725|O60477-3|BRINP1;ENSG00000078725|ENST00000265922|BRINP1	nc|ENSG00000078725|O60477-3|BRINP1	nc|ENSG00000078725|O60477-3|BRINP1	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.8124084472656	2	507.196087	1012.37762	-0.98253	-0.00049834	-2.0037	-0.0010163	-2.9862	-0.0015146	507.194916797546	89.746	0.81677	87.666	87.239	88.056	-2.0805					28	15	3	0	0	0	0.026618	1	5512	5512		50.034	0.59196	1	27133			41301	1599	34084	34108	44721	44721					-0.12807218759837724
NSDFKKEN	8	Unmodified	_NSDFKKEN_					0	0	0			REV__ENST00000225512.5_1_17:44841570-44841732:-|nuORF	REV__ENST00000225512.5_1_17:44841570-44841732:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	490.2770080566406	2	491.235439	980.456324	-1.413	-0.00069413	-1.7527	-0.00086098	-3.1657	-0.0015551	491.23437528167676	86.509	0.19996	84.333	84.18	84.38	-2.1768					5	3	2	0	0	0	0.028476	1	5132	5132		26.693	3.6504	1	7092.3	+		41302	23759	34085	34109	44722	44722					-0.034685838672317004
NSDPNLHLL	9	Unmodified	_NSDPNLHLL_					0	0	0		ENSG00000136830|ENST00000373312|NIBAN2;nc|ENSG00000136830|Q96TA1-2|NIBAN2	ENSG00000136830|ENST00000373312|NIBAN2	ENSG00000136830|ENST00000373312|NIBAN2	MULTI-MSMS	OvCa99_classI_Rep5	1	511.7680358886719	2	511.766906	1021.51926	2.8724	0.00147	-0.972	-0.00049744	1.9004	0.00097254	511.7664028731607	89.5	1.3839	89.5	88.962	90.346	0					81	33	4	0	0	0	0.019133	1	9546	9546		148.04	68.592	1	4534600			41303	4521	34086	34110	44723	44723					0.009359819208270892
NSDVICDFP	9	Unmodified	_NSDVICDFP_					0	0	0		ENSG00000173540|ENST00000308388|GMPPB;nc|ENSG00000173540|Q9Y5P6-2|GMPPB	ENSG00000173540|ENST00000308388|GMPPB	ENSG00000173540|ENST00000308388|GMPPB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	504.2971496582031	2	505.2184	1008.42225	-0.6743	-0.00034067	4.2924	0.0021686	3.6181	0.0018279	505.22012110815587	105.89	0.40842	103.87	103.7	104.1	-2.0161					10	7	2	0	0	0	0.027447	1	9617	9617		47.657	3.5405	1	17984			41304	7386	34087	34111	44724	44724					-0.08162748350514448
NSDYIMSIL	9	Unmodified	_NSDYIMSIL_					0	0	0			REV__tr|A0A7D7A2B9|A0A7D7A2B9_9CLOTTransportpermeaseproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16220PE=3SV=1	REV__tr|A0A7D7A2B9|A0A7D7A2B9_9CLOTTransportpermeaseproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16220PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3175048828125	2	528.257525	1054.5005	-0.95167	-0.00050273	2.0925	0.0011054	1.1409	0.00060267	528.2574331080201	66.101	0.34483	66.101	65.984	66.328	0					10	6	2	0	0	0	0.027462	1	6136	6136		21.96	0	1	473400	+		41305	32531	34088	34112	44725	44725					-0.024573157652412192
NSEIVVATL	9	Unmodified	_NSEIVVATL_					0	0	0		ENST00000609297.1_1_20:62887953-62888055:+|nuORF	ENST00000609297.1_1_20:62887953-62888055:+|nuORF	ENST00000609297.1_1_20:62887953-62888055:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	472.2773132324219	2	473.266207	944.517862	-0.39256	-0.00018578	0.34802	0.00016471	-0.044535	-2.1077E-05	473.26614495327755	85.021	0.98801	82.801	82.498	83.486	-2.2204					40	19	3	0	0	0	0.027441	1	5047	5047		40.778	0	1	64456			41306	14301	34089	34113	44726	44726					0.04338347832049294
NSEKRLFG	8	Unmodified	_NSEKRLFG_					0	0	0		DOCK10|p.I1947Dfs*8|1|0.06|ENSG00000135905|chr2:224775073-224775080|CCTGGATG/-|frameshift_variant;nc|ENSG00000135905|Q96BY6-3|DOCK10;ENSG00000135905|ENST00000258390|DOCK10	DOCK10|p.I1947Dfs*8|1|0.06|ENSG00000135905|chr2:224775073-224775080|CCTGGATG/-|frameshift_variant	DOCK10|p.I1947Dfs*8|1|0.06|ENSG00000135905|chr2:224775073-224775080|CCTGGATG/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.28564453125	2	475.756341	949.498129	0.62788	0.00029872	-1.1155	-0.00053068	-0.48757	-0.00023196	475.7558951713983	59.559	0.59146	56.167	55.805	56.396	-3.392					16	11	2	0	0	0	0.028476	1	3951	3951		31.955	18.18	1	25325			41307	757	34090	34114	44727	44727					0.021360166119507085
NSENPPVQ	8	Unmodified	_NSENPPVQ_					0	0	0			REV__ENST00000505727.1_1_4:26431998-26432626:+|nuORF	REV__ENST00000505727.1_1_4:26431998-26432626:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	442.28509521484375	2	442.709057	883.40356	-0.66346	-0.00029372	2.0539	0.00090928	1.3904	0.00061556	442.7098407128592	82.459	0.99399	80.162	79.938	80.932	-2.2963					26	19	2	0	0	0	0.028476	1	4740	4740		40.573	3.4135	1	37213	+		41308	21353	34091	34115	44728	44728					-0.042805419300407266
NSEVIRKIS	9	Unmodified	_NSEVIRKIS_					0	0	0		tr|A0A7D6W0L6|A0A7D6W0L6_9CLOTDUF1887familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00270PE=4SV=1	tr|A0A7D6W0L6|A0A7D6W0L6_9CLOTDUF1887familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00270PE=4SV=1	tr|A0A7D6W0L6|A0A7D6W0L6_9CLOTDUF1887familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00270PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3048095703125	2	523.303655	1044.59276	-2.1228	-0.0011108	2.0352	0.001065	-0.087543	-4.5811E-05	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.59259	1	11305	11305		32.812	1.2826	1	183010			41309	35380	34092	34116	44729	44729					0.07224530363305348
NSFDAGQIQ	9	Unmodified	_NSFDAGQIQ_					0	0	0		tr|A0A7D6VPS5|A0A7D6VPS5_9CLOTPolysaccharidedeacetylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12785PE=4SV=1	tr|A0A7D6VPS5|A0A7D6VPS5_9CLOTPolysaccharidedeacetylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12785PE=4SV=1	tr|A0A7D6VPS5|A0A7D6VPS5_9CLOTPolysaccharidedeacetylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12785PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	490.277099609375	2	490.227613	978.440674	-1.4484	-0.00071004	-4.4177	-0.0021657	-5.8661	-0.0028757	490.22607253935405	86.08	0.20044	83.86	83.735	83.936	-2.2204					5	3	2	0	0	0	0.027461	1	5099	5099		49.442	25.239	1	6645.7			41310	34793	34093	34117	44730	44730					-0.04940870384291429
NSFDDAITVD	10	Unmodified	_NSFDDAITVD_					0	0	0			REV__tr|A0A553SJ39|A0A553SJ39_NIACIPhosphoglyceratekinaseOS=NialliacirculansOX=1397GN=pgkPE=3SV=1	REV__tr|A0A553SJ39|A0A553SJ39_NIACIPhosphoglyceratekinaseOS=NialliacirculansOX=1397GN=pgkPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	547.74609375	2	548.743293	1095.47203	-0.035701	-1.9591E-05	-2.1011	-0.001153	-2.1368	-0.0011725	548.74165204253	106.29	0.72684	105.03	104.8	105.53	-1.267					20	13	2	0	0	0	0.026606	1	7488	7488		62.107	12.666	1	24187	+		41311	29961	34094	34118	44731	44731					-0.0718834214085291
NSFDDAITVD	10	Unmodified	_NSFDDAITVD_					0	0	0			REV__tr|A0A553SJ39|A0A553SJ39_NIACIPhosphoglyceratekinaseOS=NialliacirculansOX=1397GN=pgkPE=3SV=1	REV__tr|A0A553SJ39|A0A553SJ39_NIACIPhosphoglyceratekinaseOS=NialliacirculansOX=1397GN=pgkPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.7461547851562	2	548.743293	1095.47203	-1.4912	-0.00081831	-0.79367	-0.00043552	-2.2849	-0.0012538	548.7423238193558	106.93	0.68473	105.05	104.8	105.49	-1.8785					22	12	2	0	0	0	0.026734	1	9741	9741		39.253	0	1	25789	+		41312	29961	34094	34118	44732	44732					-0.0718834214085291
NSFFKNIKS	9	Unmodified	_NSFFKNIKS_					0	0	0		tr|A0A7D6ZQ89|A0A7D6ZQ89_9CLOTTPMdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23400PE=4SV=1	tr|A0A7D6ZQ89|A0A7D6ZQ89_9CLOTTPMdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23400PE=4SV=1	tr|A0A7D6ZQ89|A0A7D6ZQ89_9CLOTTPMdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23400PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.2805786132812	2	542.792924	1083.57129	0.32372	0.00017571	1.3946	0.00075698	1.7183	0.00093269	542.7935051534979	101.88	1.063	101.88	101.44	102.5	0					33	14	3	0	0	0	0.02744	1	11352	11352		44.377	3.599	1	820680			41313	35699	34095	34119	44733	44733					0.032851453345756454
NSFHVRYY	8	Unmodified	_NSFHVRYY_					0	0	0		tr|A0A7D6ZJJ7|A0A7D6ZJJ7_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11300PE=3SV=1	tr|A0A7D6ZJJ7|A0A7D6ZJJ7_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11300PE=3SV=1	tr|A0A7D6ZJJ7|A0A7D6ZJJ7_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11300PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.307373046875	2	543.261791	1084.50903	-0.44739	-0.00024305	-3.0371	-0.0016499	-3.4845	-0.001893	543.259871838448	68.43	0.54047	68.43	68.233	68.774	0					22	12	3	0	0	0	0.028476	1	6437	6437		49.442	15.269	1	692290			41314	35644	34096	34120	44734	44734					-0.02984581013765819
NSFKKALAL	9	Unmodified	_NSFKKALAL_					0	0	0		tr|A0A7D6ZW84|A0A7D6ZW84_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_06955PE=3SV=1	tr|A0A7D6ZW84|A0A7D6ZW84_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_06955PE=3SV=1	tr|A0A7D6ZW84|A0A7D6ZW84_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_06955PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	496.30047607421875	2	496.300384	990.586216	-0.35919	-0.00017827	0.21743	0.00010791	-0.14176	-7.0356E-05	496.30031555631194	121.97	1.1373	121.75	121.47	122.61	-0.21803					58	22	4	0	0	0	0.59259	1	11851	11851		32.812	0.85756	1	202890			41315	35830	34097	34121	44735	44735					0.0905463720255284
NSFLANPTTSA	11	Unmodified	_NSFLANPTTSA_					0	0	0		TRRAP|p.L2853Nfs*14|1|0.37|ENSG00000196367|chr7:98978847-98978848|-/AA|frameshift_variant;TRRAP|p.Q3700Cfs*14|1|0.37|ENSG00000196367|chr7:99011251-99011252|-/GTGCGTTAAATCTGTCACCAGAA|frameshift_variant;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.V815Afs*78|1|0.09|ENSG00000196367|chr7:98917500-98917501|-/CCTCCTCTATCCTCCTCATCCT|frameshift_variant;TRRAP|p.F1061Yfs*20|1|0.05|ENSG00000196367|chr7:98929994-98929995|-/A|frameshift_variant;TRRAP|p.G1086Afs*42|1|0.04|ENSG00000196367|chr7:98930067-98930068|-/GGCCACTTGTATTTGTTCACTTTTATTTCCGATCC|frameshift_variant	TRRAP|p.L2853Nfs*14|1|0.37|ENSG00000196367|chr7:98978847-98978848|-/AA|frameshift_variant;TRRAP|p.G1086Afs*42|1|0.04|ENSG00000196367|chr7:98930067-98930068|-/GGCCACTTGTATTTGTTCACTTTTATTTCCGATCC|frameshift_variant	TRRAP|p.L2853Nfs*14|1|0.37|ENSG00000196367|chr7:98978847-98978848|-/AA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.8041381835938	2	561.774928	1121.5353	2.0991	0.0011792	2.0719	0.0011639	4.171	0.0023432	561.775746647501	130.17	1.7973	130.17	129.45	131.25	0					84	37	4	0	0	0	0.025319	1	15114	15114		47.228	0.7709	1	220670			41316	8597;36286	34098	34122	44736	44736					-0.020603566329327805
NSFWTLITL	9	Unmodified	_NSFWTLITL_					0	0	0		tr|A0A7D6VPZ0|A0A7D6VPZ0_9CLOTRhomboidfamilyintramembraneserineproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00745PE=4SV=1	tr|A0A7D6VPZ0|A0A7D6VPZ0_9CLOTRhomboidfamilyintramembraneserineproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00745PE=4SV=1	tr|A0A7D6VPZ0|A0A7D6VPZ0_9CLOTRhomboidfamilyintramembraneserineproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00745PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	547.7974243164062	2	547.797675	1093.5808	2.6238	0.0014373	-4.2501	-0.0023282	-1.6263	-0.0008909	547.7952797873915	87.86	2.0105	87.86	87.505	89.516	0					110	48	4	0	0	0	0.3076	1	9373	9373		62.107	3.3255	1	21152000			41317	34809	34099	34123	44737	44737					0.03774913620100051
NSGHPSCL	8	Unmodified	_NSGHPSCL_					0	0	0		KAT6A|p.F1751Lfs*32|1|0.04|ENSG00000083168|chr8:41932967-41932968|-/CATAGGCTGCTGGGTATAGGCCTGGCTCCCC|frameshift_variant;ENSG00000083168|ENST00000265713|KAT6A;nc|ENSG00000130024|Q8WUB8-3|PHF10;nc|ENSG00000130024|Q8WUB8-2|PHF10;ENSG00000130024|ENST00000339209|PHF10	KAT6A|p.F1751Lfs*32|1|0.04|ENSG00000083168|chr8:41932967-41932968|-/CATAGGCTGCTGGGTATAGGCCTGGCTCCCC|frameshift_variant;nc|ENSG00000130024|Q8WUB8-3|PHF10	KAT6A|p.F1751Lfs*32|1|0.04|ENSG00000083168|chr8:41932967-41932968|-/CATAGGCTGCTGGGTATAGGCCTGGCTCCCC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	408.1912841796875	2	407.679245	813.343937	1.2659	0.00051608	0.053144	2.1666E-05	1.319	0.00053774	407.67920264487094	57.331	1.3725	53.986	53.476	54.849	-3.3449					54	26	3	0	0	0	0.028476	1	3659	3659		17.365	3.5896	1	101460			41318	1688;3952	34100	34124	44738	44738					-0.07020136145069955
NSGIGYLVT	9	Unmodified	_NSGIGYLVT_					0	0	0		nc|ENSG00000165194|Q8TAB3-3|PCDH19;chrX:100342072-100350646|343|13.98|0.63|4.47|-|ENST00000420881|PCDH19,PCDH19;nc|ENSG00000165194|Q8TAB3-2|PCDH19;ENSG00000165194|ENST00000373034|PCDH19	nc|ENSG00000165194|Q8TAB3-3|PCDH19	nc|ENSG00000165194|Q8TAB3-3|PCDH19	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.2636413574219	2	462.245275	922.475997	-2.6696	-0.001234	2.2738	0.001051	-0.39586	-0.00018299	462.2461766197416	49.418	1.7627	46.276	45.99	47.753	-3.1416					68	33	3	0	0	0	0.027453	1	2801	2801		45.972	10.354	1	252430			41319	559	34101	34125	44739	44739					0.011657921435357821
NSGIGYLVT	9	Unmodified	_NSGIGYLVT_					0	0	0		nc|ENSG00000165194|Q8TAB3-3|PCDH19;chrX:100342072-100350646|343|13.98|0.63|4.47|-|ENST00000420881|PCDH19,PCDH19;nc|ENSG00000165194|Q8TAB3-2|PCDH19;ENSG00000165194|ENST00000373034|PCDH19	nc|ENSG00000165194|Q8TAB3-3|PCDH19	nc|ENSG00000165194|Q8TAB3-3|PCDH19	MULTI-MATCH	OvCa9_classI_Rep2	2		2	462.245275	922.475997	-0.97742	-0.00045181	0.98179	0.00045383	0.0043709	2.0204E-06	462.24563012192726	49.074	1.0879	46.313	46.028	47.116	-2.7603	0.018494	-0.00071957	NaN	45.972	39	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65365			41320	559	34101	34125							0.011657921435357821
NSGLSSYYEE	10	Unmodified	_NSGLSSYYEE_					0	0	0		tr|A0A7D7A6F3|A0A7D7A6F3_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10345PE=4SV=1	tr|A0A7D7A6F3|A0A7D7A6F3_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10345PE=4SV=1	tr|A0A7D7A6F3|A0A7D7A6F3_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10345PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.83203125	2	574.740751	1147.46695	1.6801	0.00096565	1.179	0.00067763	2.8592	0.0016433	574.7413966509092	122.47	0.41029	122.47	122.27	122.68	0					12	8	2	0	0	0	0.026782	1	14080	14080		45.972	15.469	1	76778			41321	36193	34102	34126	44740	44740					-0.10088646003464419
NSGLVSRGRL	10	Unmodified	_NSGLVSRGRL_					0	0	0		tr|A0A7D6ZX11|A0A7D6ZX11_9CLOTL-threoninedehydratasecatabolicTdcBOS=ClostridiumintestinaleOX=36845GN=HZF06_20320PE=3SV=1	tr|A0A7D6ZX11|A0A7D6ZX11_9CLOTL-threoninedehydratasecatabolicTdcBOS=ClostridiumintestinaleOX=36845GN=HZF06_20320PE=3SV=1	tr|A0A7D6ZX11|A0A7D6ZX11_9CLOTL-threoninedehydratasecatabolicTdcBOS=ClostridiumintestinaleOX=36845GN=HZF06_20320PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.777099609375	2	529.806897	1057.59924	-1.0789	-0.00057163	-3.0244	-0.0016024	-4.1034	-0.002174	529.8055501978065	128.07	0.77785	126.63	126.39	127.17	-1.4357					22	14	2	0	0	0	0.027145	1	12288	12288		31.53	4.7337	1	19133			41322	35863	34103	34127	44741	44741					0.07274468314676596
NSGNIGIPL	9	Unmodified	_NSGNIGIPL_					0	0	0		tr|A0A7D6VQR5|A0A7D6VQR5_9CLOTAECfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23310PE=4SV=1	tr|A0A7D6VQR5|A0A7D6VQR5_9CLOTAECfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23310PE=4SV=1	tr|A0A7D6VQR5|A0A7D6VQR5_9CLOTAECfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23310PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	442.2294921875	2	442.745442	883.476331	0.53391	0.00023639	-1.3685	-0.00060588	-0.83454	-0.00036949	442.7450398438179	35.222	0.37952	35.222	35.004	35.384	0					9	7	2	0	0	0	0.027462	1	1736	1736		26.693	5.746	1	47180			41323	34866	34104	34128	44742	44742					0.02993211863383749
NSGPGLSDKLQ	11	Unmodified	_NSGPGLSDKLQ_					0	0	0			REV__ENST00000604981.5_1_2:112186990-112187149:-|nuORF	REV__ENST00000604981.5_1_2:112186990-112187149:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.7412719726562	2	558.288202	1114.56185	-0.18607	-0.00010388	0.2452	0.00013689	0.059121	3.3007E-05	558.2881909826746	54.924	1.2264	51.677	51.336	52.563	-3.2474					56	23	4	0	0	0	0.025466	1	3406	3406		47.96	0.30219	1	158010	+		41324	24540	34105	34129	44743	44743					0.00915332258387025
NSGPGLSDKLQ	11	Unmodified	_NSGPGLSDKLQ_					0	0	0			REV__ENST00000604981.5_1_2:112186990-112187149:-|nuORF	REV__ENST00000604981.5_1_2:112186990-112187149:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	558.288202	1114.56185	-0.53787	-0.00030029	0.6674	0.0003726	0.12953	7.2314E-05	558.2884751887581	54.761	0.74912	51.947	51.523	52.272	-2.8139	0.1348	0.00039206	NaN	47.96	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27751	+		41325	24540	34105	34129							0.00915332258387025
NSHATQNI	8	Unmodified	_NSHATQNI_					0	0	0		ENSG00000177483|ENST00000316997|RBM44	ENSG00000177483|ENST00000316997|RBM44	ENSG00000177483|ENST00000316997|RBM44	MULTI-MSMS	OvCa99_classI_Rep5	1	442.7179260253906	2	442.714673	883.414794	0.91197	0.00040374	4.3521	0.0019267	5.2641	0.0023305	442.716335717107	52.444	0.61425	52.444	52.214	52.828	0					30	13	3	0	0	0	0.53531	1	4118	4118		73.975	8.0773	1	1006900			41326	7688	34106	34130	44744	44744					-0.031577198359059366
NSHLGYLAN	9	Unmodified	_NSHLGYLAN_					0	0	0		tr|A0A7D6ZH22|A0A7D6ZH22_9CLOTVanZfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01150PE=4SV=1	tr|A0A7D6ZH22|A0A7D6ZH22_9CLOTVanZfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01150PE=4SV=1	tr|A0A7D6ZH22|A0A7D6ZH22_9CLOTVanZfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01150PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.77423095703125	2	494.745973	987.477394	-0.51042	-0.00025253	2.0209	0.00099984	1.5105	0.00074731	494.7491465915694	52.882	0.44344	49.674	49.4	49.844	-3.208					10	8	2	0	0	0	0.027462	1	3163	3163		31.53	0	1	23198			41327	35561	34107	34131	44745	44745					-0.01684573767738584
NSIEVPTW	8	Unmodified	_NSIEVPTW_					0	0	0		tr|A0A7D6VQJ6|A0A7D6VQJ6_9CLOTFe-SclusterassemblyproteinSufBOS=ClostridiumintestinaleOX=36845GN=sufBPE=3SV=1	tr|A0A7D6VQJ6|A0A7D6VQJ6_9CLOTFe-SclusterassemblyproteinSufBOS=ClostridiumintestinaleOX=36845GN=sufBPE=3SV=1	tr|A0A7D6VQJ6|A0A7D6VQJ6_9CLOTFe-SclusterassemblyproteinSufBOS=ClostridiumintestinaleOX=36845GN=sufBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	472.2773132324219	2	473.23745	944.460347	-0.39429	-0.00018659	2.5045	0.0011852	2.1102	0.00099862	473.2376680835162	85.202	1.1374	82.982	82.648	83.785	-2.2204					42	22	3	0	0	0	0.028476	1	5047	5047		55.504	16.698	1	43033			41328	34854	34108	34132	44746	44746					-0.014104943735219422
NSIGEDDEIIL	11	Unmodified	_NSIGEDDEIIL_					0	0	0			REV__tr|A0A7D6VPF4|A0A7D6VPF4_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_22830PE=4SV=1	REV__tr|A0A7D6VPF4|A0A7D6VPF4_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_22830PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	407.1997375488281	3	406.534714	1216.58231	0.64611	0.00026267	4.3051	0.0017502	4.9512	0.0020128	406.87081821615453	109.04	0.87066	107.31	107.13	108	-1.7256					23	16	2	0	0	0	0.025759	1	9990	9990		19.627	0	1	16964	+		41329	31243	34109	34133	44747	44747					-0.017315418724592746
NSIKGRAR	8	Unmodified	_NSIKGRAR_					0	0	0		nc|ENSG00000132141|Q92526-3|CCT6B;ENSG00000132141|ENST00000314144|CCT6B;nc|ENSG00000132141|Q92526-2|CCT6B	nc|ENSG00000132141|Q92526-3|CCT6B	nc|ENSG00000132141|Q92526-3|CCT6B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.9305725097656	2	451.26995	900.525347	-0.28043	-0.00012655	2.0714	0.00093475	1.7909	0.0008082	451.2706366370595	65.884	1.1703	62.399	62.179	63.349	-3.4854					50	23	3	0	0	0	0.028476	1	4749	4749		35.618	14.671	1	294330			41330	4111	34110	34134	44748	44748					0.07110544942997876
NSIKGRAR	8	Unmodified	_NSIKGRAR_					0	0	0		nc|ENSG00000132141|Q92526-3|CCT6B;ENSG00000132141|ENST00000314144|CCT6B;nc|ENSG00000132141|Q92526-2|CCT6B	nc|ENSG00000132141|Q92526-3|CCT6B	nc|ENSG00000132141|Q92526-3|CCT6B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	451.26995	900.525347	3.1135	0.001405	-0.98869	-0.00044617	2.1248	0.00095887	451.269252928201	65.191	1.1256	62.466	61.917	63.043	-2.7245	0.03371	-0.0016071	NaN	44.117	28	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54166			41331	4111	34110	34134							0.07110544942997876
NSIKKTAIGN	10	Unmodified	_NSIKKTAIGN_					0	0	0			REV__tr|A0A7D6VVE1|A0A7D6VVE1_9CLOTChromosomepartitionproteinSmcOS=ClostridiumintestinaleOX=36845GN=smcPE=3SV=1	REV__tr|A0A7D6VVE1|A0A7D6VVE1_9CLOTChromosomepartitionproteinSmcOS=ClostridiumintestinaleOX=36845GN=smcPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3038330078125	2	523.303655	1044.59276	-2.1228	-0.0011108	2.0352	0.001065	-0.087543	-4.5811E-05	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.75313	1	11402	11402		24.519	0.99649	1	183010	+		41332	31716	34111	34135	44749	44749					0.07224530363282611
NSIKYLREN	9	Unmodified	_NSIKYLREN_					0	0	0			REV__tr|A0A7D6VMR3|A0A7D6VMR3_9CLOTDNArepairproteinRecNOS=ClostridiumintestinaleOX=36845GN=recNPE=3SV=1	REV__tr|A0A7D6VMR3|A0A7D6VMR3_9CLOTDNArepairproteinRecNOS=ClostridiumintestinaleOX=36845GN=recNPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	568.8092041015625	2	568.806562	1135.59857	1.116	0.00063479	2.1818	0.001241	3.2978	0.0018758	568.807870244778	126.33	1.1001	125.26	125.07	126.17	-1.0715					36	20	2	0	0	0	0.40667	1	9870	9870		51.335	1.8939	1	58868	+		41333	31145	34112	34136	44750	44750					0.03619628874957925
NSILSITVQ	9	Unmodified	_NSILSITVQ_					0	0	0		nc|ENSG00000198758|Q8TE67-2|EPS8L3;ENSG00000198758|ENST00000361965|EPS8L3;nc|ENSG00000198758|Q8TE67-3|EPS8L3	nc|ENSG00000198758|Q8TE67-2|EPS8L3	nc|ENSG00000198758|Q8TE67-2|EPS8L3	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.2811584472656	2	487.779482	973.544411	0.69575	0.00033937	-2.2323	-0.0010889	-1.5365	-0.0007495	487.77818817677985	82.243	0.41776	80.595	80.386	80.804	-1.6485					15	7	3	0	0	0	0.027462	1	7027	7027		35.152	0	1	37338			41334	8868	34113	34137	44751	44751					0.05658036723366422
NSILSITVQ	9	Unmodified	_NSILSITVQ_					0	0	0		nc|ENSG00000198758|Q8TE67-2|EPS8L3;ENSG00000198758|ENST00000361965|EPS8L3;nc|ENSG00000198758|Q8TE67-3|EPS8L3	nc|ENSG00000198758|Q8TE67-2|EPS8L3	nc|ENSG00000198758|Q8TE67-2|EPS8L3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	487.779482	973.544411	-0.0832	-4.0583E-05	-0.65285	-0.00031845	-0.73605	-0.00035903	487.7791134961915	83.323	0.48858	80.66	80.29	80.779	-2.6629	0.032919	0.00034476	NaN	45.022	18	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104960			41335	8868	34113	34137							0.05658036723366422
NSILSSRPD	9	Unmodified	_NSILSSRPD_					0	0	0		ENST00000520773.5_1_5:150322224-150323475:-|nuORF	ENST00000520773.5_1_5:150322224-150323475:-|nuORF	ENST00000520773.5_1_5:150322224-150323475:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.77423095703125	2	494.756538	987.498523	-0.3931	-0.00019449	0.54476	0.00026952	0.15166	7.5033E-05	494.7568018482075	52.618	0.45745	49.41	49.145	49.602	-3.208					16	8	2	0	0	0	0.027433	1	3163	3163		45.972	0	1	122670			41336	13113	34114	34138	44752	44752					0.004273915411431517
NSILWLLSS	9	Unmodified	_NSILWLLSS_					0	0	0		ENST00000465826.5_1_3:12628841-12633220:-|nuORF	ENST00000465826.5_1_3:12628841-12633220:-|nuORF	ENST00000465826.5_1_3:12628841-12633220:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.8289794921875	2	516.78985	1031.56515	0.20019	0.00010346	-0.54928	-0.00028386	-0.34909	-0.0001804	516.7896472981906	133.65	0.49304	132.52	132.37	132.86	-1.1226					13	9	2	0	0	0	0.027462	1	10762	10762		37.812	20.447	1	8579.1			41337	12276	34115	34139	44753	44753					0.05062627103075101
NSIQWILL	8	Unmodified	_NSIQWILL_					0	0	0			REV__CON__Q05B55	REV__CON__Q05B55	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.77423095703125	2	493.78711	985.559667	-0.34811	-0.00017189	3.3545	0.0016564	3.0064	0.0014845	493.78827905100985	52.651	0.54588	49.443	49.298	49.844	-3.208					10	10	2	0	0	0	0.028476	1	3163	3163		37.159	1.5408	1	21911	+	+	41338	16197	34116	34140	44754	44754					0.06630948311249085
NSISRDRPLMW	11	Unmodified	_NSISRDRPLMW_					0	0	0			REV__ENST00000496169.5_1_7:140156452-140158931:-|nuORF	REV__ENST00000496169.5_1_7:140156452-140158931:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	458.9031982421875	3	458.903078	1373.6874	0.13047	5.9875E-05	1.561	0.00071634	1.6915	0.00077622	458.90363350883695	31.367	0.73541	31.367	31.171	31.906	0					27	14	4	0	0	0	0.68059	1	1292	1292		36.318	7.7409	1	139980	+		41339	26755	34117	34141	44755	44755					0.015507208429653474
NSIWEHSLL	9	Unmodified	_NSIWEHSLL_					0	0	0		ENST00000551455.5_1_12:110388962-110434038:-|nuORF;nc|ENSG00000139436|Q14161-2|GIT2;nc|ENSG00000139436|Q14161-11|GIT2;nc|ENSG00000139436|Q14161-7|GIT2;nc|ENSG00000139436|Q14161-9|GIT2;nc|ENSG00000139436|Q14161-6|GIT2;nc|ENSG00000139436|Q14161-10|GIT2;nc|ENSG00000139436|Q14161-8|GIT2;nc|ENSG00000139436|Q14161-4|GIT2;nc|ENSG00000139436|Q14161-5|GIT2;nc|ENSG00000139436|Q14161-3|GIT2;ENSG00000139436|ENST00000355312|GIT2;nc|ENSG00000108262|Q9Y2X7-2|GIT1;ENSG00000108262|ENST00000225394|GIT1;nc|ENSG00000108262|Q9Y2X7-3|GIT1	ENST00000551455.5_1_12:110388962-110434038:-|nuORF;nc|ENSG00000108262|Q9Y2X7-2|GIT1	ENST00000551455.5_1_12:110388962-110434038:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	549.8312377929688	2	549.782556	1097.55056	-0.1249	-6.8667E-05	0.43348	0.00023832	0.30858	0.00016965	549.7827578971537	71.375	0.99717	68.772	68.331	69.328	-2.6023					29	19	2	0	0	0	0.027462	1	3373	3373		29.15	0	1	25462			41340	4775;2642	34118	34142	44756	44756					0.005685549549070856
NSKDKRKSIF	10	Unmodified	_NSKDKRKSIF_					0	0	0		tr|A0A7D6ZE22|A0A7D6ZE22_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11935PE=4SV=1	tr|A0A7D6ZE22|A0A7D6ZE22_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11935PE=4SV=1	tr|A0A7D6ZE22|A0A7D6ZE22_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11935PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	408.2356262207031	3	408.234933	1221.68297	2.0327	0.00082982	-0.65561	-0.00026764	1.3771	0.00056217	408.23455518554186	35.902	1.0481	33.053	32.79	33.838	-2.849					45	20	4	0	0	0	0.7855	1	1193	1193		20.837	1.5745	1	83397			41341	35474	34119	34143	44757	44757					0.08099579691702274
NSKDKRKSIF	10	Unmodified	_NSKDKRKSIF_					0	0	0		tr|A0A7D6ZE22|A0A7D6ZE22_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11935PE=4SV=1	tr|A0A7D6ZE22|A0A7D6ZE22_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11935PE=4SV=1	tr|A0A7D6ZE22|A0A7D6ZE22_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11935PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	408.234933	1221.68297	-1.3851	-0.00056544	2.338	0.00095447	0.95296	0.00038903	408.2358977316288	36.124	0.79069	33.414	33.152	33.942	-2.7097	0.18049	0.0022459	NaN	20.837	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27987			41342	35474	34119	34143							0.08099579691702274
NSKKNLPIQ	9	Unmodified	_NSKKNLPIQ_					0	0	0		tr|A0A553SMY0|A0A553SMY0_NIACIAAAfamilyATPaseOS=NialliacirculansOX=1397GN=CEQ21_23385PE=3SV=1	tr|A0A553SMY0|A0A553SMY0_NIACIAAAfamilyATPaseOS=NialliacirculansOX=1397GN=CEQ21_23385PE=3SV=1	tr|A0A553SMY0|A0A553SMY0_NIACIAAAfamilyATPaseOS=NialliacirculansOX=1397GN=CEQ21_23385PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.283447265625	2	521.306198	1040.59784	-1.1104	-0.00057884	-1.5497	-0.00080785	-2.66	-0.0013867	521.3053303165135	71.046	0.47641	67.59	67.299	67.776	-3.4563					20	9	3	0	0	0	0.027462	1	5365	5365		30.318	0	1	416280			41343	33882	34120	34144	44758	44758					0.07916834225898128
NSKNRLRVF	9	Unmodified	_NSKNRLRVF_					0	0	0			REV__nc|ENSG00000160789|P02545-5|LMNA;REV__ENST00000496738.5_1_1:156104620-156106879:+|nuORF	REV__nc|ENSG00000160789|P02545-5|LMNA	MULTI-MSMS	OvCa9_classI_Rep2	2	567.329345703125	2	567.330539	1132.64652	-2.3399	-0.0013275	0.99796	0.00056617	-1.3419	-0.00076131	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.63422	1	14643	14643		27.882	4.8398	1	241060	+		41344	20673;26767	34121	34145	44759	44759					0.08550747585650242
NSKRRHWRRTK	11	Unmodified	_NSKRRHWRRTK_					0	0	0		ENSG00000198918|ENST00000361575|RPL39;ENSG00000163923|ENST00000296277|RPL39L	ENSG00000198918|ENST00000361575|RPL39	ENSG00000198918|ENST00000361575|RPL39	MULTI-MSMS	OvCa99_classI_Rep5	1	508.9623718261719	3	508.962541	1523.86579	-0.15622	-7.9511E-05	-0.88663	-0.00045126	-1.0429	-0.00053077	508.9624357297428	22.913	0.87949	22.913	22.617	23.497	0					54	18	5	0	0	0	0.72528	1	270	270		11.932	3.1331	1	432650			41345	6379	34122	34146	44760	44760					0.12481571596845242
NSKSKEKE	8	Unmodified	_NSKSKEKE_					0	0	0			REV__nc|ENSG00000106635|Q9BQE9-4|BCL7B	REV__nc|ENSG00000106635|Q9BQE9-4|BCL7B	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.786865234375	2	475.251089	948.487624	0.10777	5.1217E-05	0.99234	0.00047161	1.1001	0.00052283	475.2514834306278	31.264	0.29506	28.554	28.445	28.74	-2.7097					8	5	2	0	0	0	0.028476	1	946	946		31.955	1.4512	1	12546	+		41346	17816	34123	34147	44761	44761					0.011319891668676973
NSKVRTPP	8	Unmodified	_NSKVRTPP_					0	0	0		ENST00000282074.6_1_2:169745932-169745989:-|nuORF	ENST00000282074.6_1_2:169745932-169745989:-|nuORF	ENST00000282074.6_1_2:169745932-169745989:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	450.26800537109375	2	449.758884	897.503215	2.9465	0.0013252	-2.9648	-0.0013334	-0.018253	-8.2094E-06	449.7573478129657	72.018	1.8795	69.511	68.858	70.737	-2.5071					85	35	3	0	0	0	0.028476	1	5748	5748		27.882	7.4004	1	466960			41347	10053	34124	34148	44762	44762					0.05036320474573586
NSLHLQPRA	9	Unmodified	_NSLHLQPRA_					0	0	0		ENST00000592172.5_1_19:6026246-6110452:-|nuORF	ENST00000592172.5_1_19:6026246-6110452:-|nuORF	ENST00000592172.5_1_19:6026246-6110452:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.7547607421875	2	518.28834	1034.56213	-0.0062724	-3.2509E-06	2.9045	0.0015054	2.8982	0.0015021	518.289221697298	99.776	0.52071	98.091	97.777	98.297	-1.685					20	9	3	0	0	0	0.027426	1	6708	6708		76.774	41.573	1	39558			41348	14130	34125	34149	44763	44763					0.04622796768899207
NSLILFATI	9	Unmodified	_NSLILFATI_					0	0	0		ENSG00000197674|ENST00000641159|OR51C1P	ENSG00000197674|ENST00000641159|OR51C1P	ENSG00000197674|ENST00000641159|OR51C1P	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.2835998535156	2	496.294768	990.574983	0.1881	9.3355E-05	0.16925	8.3996E-05	0.35735	0.00017735	496.29452375476563	112.28	1.4754	110.77	110.26	111.74	-1.5111					49	28	3	0	0	0	0.027462	1	10348	10348		13.454	0.64233	1	55229			41349	8735	34126	34150	44764	44764					0.07931815108440787
NSLINQVPI	9	Unmodified	_NSLINQVPI_					0	0	0		tr|A0A7D6ZTD2|A0A7D6ZTD2_9CLOTCyanophycinsynthetaseOS=ClostridiumintestinaleOX=36845GN=cphAPE=3SV=1	tr|A0A7D6ZTD2|A0A7D6ZTD2_9CLOTCyanophycinsynthetaseOS=ClostridiumintestinaleOX=36845GN=cphAPE=3SV=1	tr|A0A7D6ZTD2|A0A7D6ZTD2_9CLOTCyanophycinsynthetaseOS=ClostridiumintestinaleOX=36845GN=cphAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	499.2885437011719	2	499.287474	996.560395	-1.1559	-0.0005771	0.43608	0.00021773	-0.71978	-0.00035938	499.2876340721799	91.351	1.3453	89.327	88.879	90.225	-2.0241					77	26	4	0	0	0	0.24951	1	5741	5741		68.787	0	1	1681400			41350	35752	34127	34151	44765	44765					0.06197742960296182
NSLIRMTSD	9	Unmodified	_NSLIRMTSD_					0	0	0			REV__ENSG00000136514|ENST00000259030|RTP4	REV__ENSG00000136514|ENST00000259030|RTP4	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.2841796875	2	518.758223	1035.50189	-0.42092	-0.00021836	-2.7239	-0.0014131	-3.1448	-0.0016314	518.7566428385359	58.501	0.53717	58.501	58.237	58.774	0					19	12	2	0	0	0	0.027462	1	5011	5011		19.997	4.355	1	647930	+		41351	19389	34128	34152	44766	44766					-0.014436816765055482
NSLISLPKVL	10	Unmodified	_NSLISLPKVL_					0	0	0			REV__tr|A0A7D6W2Y0|A0A7D6W2Y0_9CLOTHAMPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07770PE=3SV=1	REV__tr|A0A7D6W2Y0|A0A7D6W2Y0_9CLOTHAMPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07770PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.7792358398438	2	542.342249	1082.66995	-1.6044	-0.00087013	0.67639	0.00036683	-0.92801	-0.0005033	542.342416035318	102.31	0.83903	101.63	101.44	102.28	-0.68459					24	16	2	0	0	0	0.026734	1	9399	9399		18.262	3.3972	1	34839	+		41352	31907	34129	34153	44767	44767					0.1319174857960661
NSLKFLGY	8	Unmodified	_NSLKFLGY_					0	0	0		nc|ENSG00000154263|Q8WWZ4-2|ABCA10;ENSG00000154263|ENST00000690296|ABCA10;ENST00000519732.5_1_17:67144970-67171813:-|nuORF;ENST00000522406.5_1_17:67144970-67178294:-|nuORF	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.28790283203125	2	471.258185	940.501818	-0.095697	-4.5098E-05	-1.7127	-0.00080713	-1.8084	-0.00085223	471.2566466161213	71.454	0.36015	71.454	71.308	71.668	0					13	8	3	0	0	0	0.028476	1	6935	6935		53.351	0	1	152540			41353	5725	34130	34154	44768	44768					0.02918686385817182
NSLKLFLLK	9	Unmodified	_NSLKLFLLK_					0	0	0		ENST00000552980.6_2_12:53848175-53848250:+|nuORF	ENST00000552980.6_2_12:53848175-53848250:+|nuORF	ENST00000552980.6_2_12:53848175-53848250:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	538.3032836914062	2	538.347335	1074.68012	1.0007	0.0005387	-2.3647	-0.001273	-1.364	-0.00073433	538.3458563501657	89.364	0.49433	87.996	87.823	88.318	-1.3676					16	9	2	0	0	0	0.027426	1	7857	7857		56.721	10.749	1	22842			41354	13616	34131	34155	44769	44769					0.14576356304837645
NSLKPVVSPIP	11	Unmodified	_NSLKPVVSPIP_					0	0	0		chr20:34017505-34031522|272|19.89|0.87|4.52|+|0|None,RALY|1	chr20:34017505-34031522|272|19.89|0.87|4.52|+|0|None,RALY|1	chr20:34017505-34031522|272|19.89|0.87|4.52|+|0|None,RALY|1	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8421630859375	2	575.845156	1149.67576	-4.018	-0.0023138	0.54994	0.00031668	-3.4681	-0.0019971	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.72064	1	12020	12020		22.58	0.61977	1	445630			41355	452	34132	34156	44770	44770					0.10690847091291289
NSLKSKVEK	9	Unmodified	_NSLKSKVEK_					0	0	0			REV__NISCH|p.L754Sfs*219|1|0.14|ENSG00000010322|chr3:52487751-52487751|C/-|frameshift_variant	REV__NISCH|p.L754Sfs*219|1|0.14|ENSG00000010322|chr3:52487751-52487751|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.325439453125	2	516.806031	1031.59751	-0.27846	-0.00014391	3.9292	0.0020307	3.6508	0.0018867	516.8078251281127	83.406	1.1118	80.743	80.437	81.549	-2.6629					59	22	4	0	0	0	0.027418	1	7023	7023		62.107	9.0185	1	307530	+		41356	29253	34133	34157	44771	44771					0.08297414506046152
NSLLFNQPL	9	Unmodified	_NSLLFNQPL_					0	0	0		ENSG00000143994|ENST00000316470|ABHD1;nc|ENSG00000143994|Q96SE0-3|ABHD1	ENSG00000143994|ENST00000316470|ABHD1	ENSG00000143994|ENST00000316470|ABHD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8076171875	2	523.287474	1044.5604	-0.85019	-0.0004449	-3.7692	-0.0019724	-4.6194	-0.0024173	523.2856024805469	51.69	0.4532	51.69	51.418	51.871	0					15	10	2	0	0	0	0.027462	1	4013	4013		27.882	0	1	329820			41357	5115	34134	34158	44772	44772					0.03989742960266085
NSLLYIDL	8	Unmodified	_NSLLYIDL_					0	0	0			REV__tr|A0A7D6VQK4|A0A7D6VQK4_9CLOTMurR/RpiRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03720PE=4SV=1	REV__tr|A0A7D6VQK4|A0A7D6VQK4_9CLOTMurR/RpiRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03720PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	474.7926330566406	2	475.7633	949.512048	1.2625	0.00060065	-0.38322	-0.00018232	0.87928	0.00041833	475.76261931764884	105.23	0.93684	103.88	103.57	104.51	-1.3482					36	17	3	0	0	0	0.028476	1	7370	7370		27.882	4.8398	1	44240	+		41358	31332	34135	34159	44773	44773					0.03527249320381998
NSLNNVKP	8	Unmodified	_NSLNNVKP_					0	0	0			REV__tr|A0A7D7A4Z5|A0A7D7A4Z5_9CLOTSugar-bindingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_05145PE=3SV=1	REV__tr|A0A7D7A4Z5|A0A7D7A4Z5_9CLOTSugar-bindingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_05145PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	442.2850036621094	2	443.243067	884.47158	-0.71852	-0.00031848	3.0156	0.0013367	2.2971	0.0010182	443.24413162816774	83.353	0.14864	81.056	80.932	81.081	-2.2963					4	2	2	0	0	0	0.028476	1	4753	4753		55.504	5.4797	1	7406.5	+		41359	32620	34136	34160	44774	44774					0.024723277206248895
NSLPRQLLQ	9	Unmodified	_NSLPRQLLQ_					0	0	0		ZFHX4|p.P2488R|1|0.24|ENSG00000091656|chr8:76854384-76854384|C/G|missense_variant	ZFHX4|p.P2488R|1|0.24|ENSG00000091656|chr8:76854384-76854384|C/G|missense_variant	ZFHX4|p.P2488R|1|0.24|ENSG00000091656|chr8:76854384-76854384|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.8120727539062	2	534.811648	1067.60874	-1.804	-0.0009648	0.81471	0.00043572	-0.98929	-0.00052909	534.8120810621485	92.846	1.3887	90.339	89.959	91.348	-2.5072					76	28	4	0	0	0	0.22621	1	8127	8127		71.877	2.2498	1	2073700			41360	36316	34137	34161	44775	44775					0.07764236600178265
NSLQGKLIA	9	Unmodified	_NSLQGKLIA_					0	0	0		tr|A0A553SI21|A0A553SI21_NIACITypeVIIsecretionproteinEsaAOS=NialliacirculansOX=1397GN=esaAPE=3SV=1	tr|A0A553SI21|A0A553SI21_NIACITypeVIIsecretionproteinEsaAOS=NialliacirculansOX=1397GN=esaAPE=3SV=1	tr|A0A553SI21|A0A553SI21_NIACITypeVIIsecretionproteinEsaAOS=NialliacirculansOX=1397GN=esaAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.28790283203125	2	472.282192	942.549831	-0.066175	-3.1253E-05	0.38813	0.00018331	0.32196	0.00015206	472.2826131128306	71.489	0.56805	71.489	71.267	71.835	0					36	13	4	0	0	0	0.027358	1	6935	6935		56.434	0	1	2389700			41361	33335	34138	34162	44776	44776					0.07625760305870699
NSLSLLRPLL	10	Unmodified	_NSLSLLRPLL_					0	0	0			REV__ENSG00000112379|ENST00000251691|ARFGEF3	REV__ENSG00000112379|ENST00000251691|ARFGEF3	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.3533325195312	2	563.353148	1124.69174	0.72344	0.00040755	-1.5701	-0.00088453	-0.84668	-0.00047698	563.3523799001858	117.47	3.3994	116.13	115.53	118.93	-1.3452					169	64	5	0	0	0	0.60504	1	11070	11070		41.427	8.6761	1	2980000	+		41362	18098	34139	34163	44777	44777					0.1343855332820567
NSMAWTRLS	9	Unmodified	_NSMAWTRLS_					0	0	0		ENSG00000070031|ENST00000176195|SCT	ENSG00000070031|ENST00000176195|SCT	ENSG00000070031|ENST00000176195|SCT	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.8104248046875	2	533.260933	1064.50731	0.16895	9.0093E-05	-2.5189	-0.0013433	-2.35	-0.0012532	533.2567696654277	62.888	0.35547	62.888	62.703	63.058	0					20	8	3	0	0	0	0.027462	1	5598	5598		30.318	1.1682	1	469370			41363	1417	34140	34164	44778	44778					-0.02235958094047419
NSMGKRGFSES	11	Unmodified	_NSMGKRGFSES_					0	0	0		ENSG00000215421|ENST00000299687|ZNF407;ZNF407|p.R271Lfs*14|1|0.33|ENSG00000215421|chr18:74631831-74631831|G/-|frameshift_variant;nc|ENSG00000215421|Q9C0G0-2|ZNF407;nc|ENSG00000215421|Q9C0G0-3|ZNF407	ENSG00000215421|ENST00000299687|ZNF407;nc|ENSG00000215421|Q9C0G0-3|ZNF407	ENSG00000215421|ENST00000299687|ZNF407	MULTI-MSMS	OvCa9_classI_Rep3	3	600.2716064453125	2	600.277312	1198.54007	-4.8728	-0.002925	-3.8704	-0.0023233	-8.7432	-0.0052483	600.2748840186918	159.86	2.843	158.53	158.01	160.85	-1.3316					169	56	5	0	0	0	0.70142	1	13840	13840		29.17	2.1227	1	277240			41364	9206;15315	34141	34165	44779	44779					-0.05125795761819063
NSNLHRLVQ	9	Unmodified	_NSNLHRLVQ_					0	0	0		ENSG00000166685|ENST00000299886|COG1	ENSG00000166685|ENST00000299886|COG1	ENSG00000166685|ENST00000299886|COG1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.2570190429688	2	540.799072	1079.58359	-0.74534	-0.00040308	1.3287	0.00071854	0.58332	0.00031546	540.7999391543972	56.313	1.2156	53.019	52.718	53.934	-3.2944					45	23	4	0	0	0	0.027462	1	3668	3668		30.318	0	1	75439			41365	6701	34142	34166	44780	44780					0.046981817976075035
NSNMFNLIK	9	Unmodified	_NSNMFNLIK_					0	0	0			REV__tr|A0A7D6VVD2|A0A7D6VVD2_9CLOTATP-dependenthelicase/nucleasesubunitAOS=ClostridiumintestinaleOX=36845GN=addAPE=3SV=1	REV__tr|A0A7D6VVD2|A0A7D6VVD2_9CLOTATP-dependenthelicase/nucleasesubunitAOS=ClostridiumintestinaleOX=36845GN=addAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.2570190429688	2	540.778959	1079.54336	-0.5043	-0.00027271	1.8424	0.00099633	1.3381	0.00072362	540.7798794591657	56.803	0.96567	53.458	53.07	54.035	-3.3449					29	18	2	0	0	0	0.027462	1	3668	3668		45.972	0	1	26028	+		41366	31714	34143	34167	44781	44781					0.006774990828262162
NSNTRNPLD	9	Unmodified	_NSNTRNPLD_					0	0	0			REV__ENST00000496105.1_1_3:113169108-113212968:-|nuORF	REV__ENST00000496105.1_1_3:113169108-113212968:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.2726440429688	2	515.749244	1029.48394	0.10656	5.4957E-05	-3.6148	-0.0018643	-3.5082	-0.0018094	515.7468052526511	60.196	0.49257	56.766	56.504	56.996	-3.43					12	9	2	0	0	0	0.027462	1	4067	4067		35.152	1.6364	1	9310.3	+		41367	20859	34144	34168	44782	44782					-0.029626806069927625
NSPDRPEAW	9	Unmodified	_NSPDRPEAW_					0	0	0			REV__ENSG00000115850|ENST00000264162|LCT	REV__ENSG00000115850|ENST00000264162|LCT	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.2478637695312	2	536.246338	1070.47812	-0.56791	-0.00030454	-1.2228	-0.00065575	-1.7908	-0.00096029	536.245545782205	112.08	0.73752	110.57	110.05	110.79	-1.5111					19	13	2	0	0	0	0.027462	1	10368	10368		21.686	0	1	38432	+		41368	18274	34145	34169	44783	44783					-0.05429779118685474
NSPIPLPAL	9	Unmodified	_NSPIPLPAL_					0	0	0			REV__nc|ENSG00000148396|O15027-2|SEC16A	REV__nc|ENSG00000148396|O15027-2|SEC16A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.2458801269531	2	461.273835	920.533118	-0.4792	-0.00022104	-3.3836	-0.0015608	-3.8628	-0.0017818	461.2719353585599	64.126	0.29297	60.651	60.442	60.735	-3.475					8	5	2	0	0	0	0.027448	1	4521	4521		20.947	0	1	21788	+		41369	20108	34146	34170	44784	44784					0.06967259419900529
NSPIPLPALPA	11	Unmodified	_NSPIPLPALPA_					0	0	0			REV__nc|ENSG00000148396|O15027-2|SEC16A	REV__nc|ENSG00000148396|O15027-2|SEC16A	MULTI-MSMS	OvCa9_classI_Rep3	3	545.31689453125	2	545.318774	1088.623	-2.8527	-0.0015556	-0.96726	-0.00052747	-3.8199	-0.0020831	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.71498	1	11916	11916		24.519	0.99649	1	337600	+		41370	20108	34147	34171	44785	44785					0.08222889028479585
NSPIPVYY	8	Unmodified	_NSPIPVYY_					0	0	0		tr|A0A7D6VQK3|A0A7D6VQK3_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_21445PE=4SV=1	tr|A0A7D6VQK3|A0A7D6VQK3_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_21445PE=4SV=1	tr|A0A7D6VQK3|A0A7D6VQK3_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_21445PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.2928161621094	2	476.742368	951.470183	-0.68444	-0.0003263	1.3718	0.00065401	0.68739	0.00032771	476.7423164128054	74.777	0.57066	72.806	72.429	72.999	-1.9711					14	10	2	0	0	0	0.028476	1	6131	6131		29.15	0	1	14361			41371	34855	34148	34172	44786	44786					-0.007493063681408785
NSPIRLLDL	9	Unmodified	_NSPIRLLDL_					0	0	0			REV__ENST00000434290.5_1_1:28832593-28843241:+|nuORF	REV__ENST00000434290.5_1_1:28832593-28843241:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	520.8082275390625	2	520.808574	1039.60259	-0.75387	-0.00039262	-0.26291	-0.00013692	-1.0168	-0.00052955	520.8086564098226	117.01	1.684	116.88	116.47	118.15	-0.12869					113	33	7	0	0	0	0.07097	2	11205	11205;11217		106.68	3.2612	1	478140	+		41372	25049	34149	34173	44787;44788	44787					0.08437718368668357
NSPIRLLDL	9	Unmodified	_NSPIRLLDL_					0	0	0			REV__ENST00000434290.5_1_1:28832593-28843241:+|nuORF	REV__ENST00000434290.5_1_1:28832593-28843241:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	520.8078002929688	2	520.808574	1039.60259	-0.35534	-0.00018507	-0.76826	-0.00040012	-1.1236	-0.00058518	520.8083888722493	117.96	1.486	116.93	116.54	118.02	-1.0324					98	29	6	0	0	0	0.31122	1	8873	8873		61.691	1.7605	1	547170	+		41373	25049	34149	34173	44789	44789					0.08437718368668357
NSPIRLLDL	9	Unmodified	_NSPIRLLDL_					0	0	0			REV__ENST00000434290.5_1_1:28832593-28843241:+|nuORF	REV__ENST00000434290.5_1_1:28832593-28843241:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.8079833984375	2	520.808574	1039.60259	-1.3681	-0.00071254	0.72324	0.00037667	-0.6449	-0.00033587	520.8088352465354	118.21	1.5638	116.87	116.47	118.03	-1.3444					69	29	3	0	0	0	0.1243	1	11072	11072		90.601	2.4239	1	587660	+		41374	25049	34149	34173	44790	44790					0.08437718368668357
NSPKPREYE	9	Unmodified	_NSPKPREYE_					0	0	0			REV__nc|ENSG00000176463|Q9UIG8-4|SLCO3A1	REV__nc|ENSG00000176463|Q9UIG8-4|SLCO3A1	MULTI-MSMS	OvCa9_classI_Rep3	3	560.2767333984375	2	560.275095	1118.53564	0.059706	3.3452E-05	-0.027259	-1.5272E-05	0.032448	1.818E-05	560.2749568783789	106.86	2.1744	105.6	105.27	107.44	-1.267					110	42	3	0	0	0	0.56189	1	7558	7558		36.447	8.3653	1	1807000	+		41375	21952	34150	34174	44791	44791					-0.01888936913087491
NSPNMIAQAQK	11	Unmodified	_NSPNMIAQAQK_					0	0	0		tr|A0A553SNR0|A0A553SNR0_NIACIClassISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_25060PE=4SV=1	tr|A0A553SNR0|A0A553SNR0_NIACIClassISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_25060PE=4SV=1	tr|A0A553SNR0|A0A553SNR0_NIACIClassISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_25060PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	601.3031005859375	2	601.303329	1200.59211	1.4821	0.00089119	-2.5546	-0.0015361	-1.0725	-0.0006449	601.30219782033	149.77	2.5731	149.77	149.4	151.97	0					182	51	8	0	0	0	0.69455	1	17729	17729		31.53	0	1	11852000			41376	33947	34151	34175	44792	44792					-0.00016632348092571192
NSPPSPQRGME	11	Unmodified	_NSPPSPQRGME_					0	0	0		ENST00000257897.7_2_12:58120030-58120555:-|nuORF	ENST00000257897.7_2_12:58120030-58120555:-|nuORF	ENST00000257897.7_2_12:58120030-58120555:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	600.2716064453125	2	600.277312	1198.54007	-4.8728	-0.002925	-3.8704	-0.0023233	-8.7432	-0.0052483	600.2748840186918	159.86	2.843	158.53	158.01	160.85	-1.3316					169	56	5	0	0	0	0.68021	1	13894	13894		36.447	6.129	1	277240			41377	9831	34152	34176	44793	44793					-0.051257957618418004
NSPQDEPIN	9	Unmodified	_NSPQDEPIN_					0	0	0			REV__ENSG00000110002|ENST00000456829|VWA5A	REV__ENSG00000110002|ENST00000456829|VWA5A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.8124694824219	2	507.230353	1012.44615	0.46301	0.00023485	2.2513	0.0011419	2.7143	0.0013768	507.7316557283396	89.595	0.24916	87.02	86.9	87.149	-2.575					8	4	3	0	0	0	0.027358	1	7693	7693		75.043	20.267	1	7435.1	+		41378	17963	34153	34177	44794	44794					-0.059571915924834684
NSPVELREP	9	Unmodified	_NSPVELREP_					0	0	0		ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	ENSG00000204287|ENST00000395388|HLA-DRA	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.328125	2	520.772188	1039.52982	-0.43899	-0.00022861	-0.39386	-0.00020511	-0.83285	-0.00043372	520.7721598203308	116.12	0.5423	115.08	114.85	115.39	-1.0414					15	10	2	0	0	0	0.027433	1	8633	8633		64.207	11.271	1	16557			41379	8967	34154	34178	44795	44795					0.01163964575243881
NSQLLADFLS	10	Unmodified	_NSQLLADFLS_					0	0	0		nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14;ENST00000503608.5_1_6:86227446-86235949:-|nuORF	nc|ENSG00000135317|Q9Y5W7-2|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	MULTI-SECPEP	OvCa9_classI_Rep2	2	553.8379516601562	2	554.287671	1106.56079	-0.31715	-0.00017579	-0.4801	-0.00026611	-0.79725	-0.00044191	554.2876603843378	102.45	0.78934	101.76	101.54	102.33	-0.68459					25	15	2	0	0	0	0.026968	1	9484	9484		16.717	6.4521	1	35140			41380	4366	34155	34179	44796	44796					0.011771178894605328
NSQLLADFLS	10	Unmodified	_NSQLLADFLS_					0	0	0		nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14;ENST00000503608.5_1_6:86227446-86235949:-|nuORF	nc|ENSG00000135317|Q9Y5W7-2|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	MULTI-MATCH	OvCa9_classI_Rep3	3		2	554.287671	1106.56079	-0.54892	-0.00030426	0.54535	0.00030228	-0.0035718	-1.9798E-06	554.2877891209478	103.14	0.47292	101.64	101.44	101.91	-1.4938	-0.078494	0.00041272	NaN	16.717	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35351			41381	4366	34155	34179							0.011771178894605328
NSQLLADFLS	10	Unmodified	_NSQLLADFLS_					0	0	0		nc|ENSG00000135317|Q9Y5W7-2|SNX14;nc|ENSG00000135317|Q9Y5W7-3|SNX14;nc|ENSG00000135317|Q9Y5W7-4|SNX14;ENSG00000135317|ENST00000314673|SNX14;ENST00000503608.5_1_6:86227446-86235949:-|nuORF	nc|ENSG00000135317|Q9Y5W7-2|SNX14	nc|ENSG00000135317|Q9Y5W7-2|SNX14	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	554.287671	1106.56079	-0.27308	-0.00015137	1.1227	0.00062231	0.84964	0.00047095	554.288541068793	103.88	1.1026	101.76	101.43	102.53	-2.1192	0.036835	0.0010528	NaN	16.717	27	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33219			41382	4366	34155	34179							0.011771178894605328
NSQYQMLLD	9	Unmodified	_NSQYQMLLD_					0	0	0		ZMYND8-EYA2|1|fusion;ZMYND8-EYA2|3|fusion;ZMYND8-EYA2|7|fusion;ZMYND8-EYA2|5|fusion;ZMYND8-EYA2|8|fusion;ZMYND8-EYA2|2|fusion;ZMYND8-EYA2|4|fusion;nc|ENSG00000101040|Q9ULU4-19|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-22|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;nc|ENSG00000101040|Q9ULU4-8|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-17|ZMYND8;ZMYND8-EYA2|6|fusion;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;ENST00000468376.2_1_20:45867286-45947776:-|nuORF	ZMYND8-EYA2|1|fusion	ZMYND8-EYA2|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.2952270507812	2	556.258056	1110.50156	1.9297	0.0010734	1.0684	0.00059429	2.9981	0.0016677	556.25855295556	135.06	0.45255	135.06	134.81	135.27	0					16	9	2	0	0	0	0.027462	1	15746	15746		35.152	2.3396	1	75394			41383	36318	34156	34180	44797	44797					-0.04927101396356193
NSRHTLTQ	8	Unmodified	_NSRHTLTQ_					0	0	0			REV__nc|ENSG00000163349|Q86Z02-2|HIPK1	REV__nc|ENSG00000163349|Q86Z02-2|HIPK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.2957458496094	2	478.749047	955.483542	2.1103	0.0010103	3.9718	0.0019015	6.082	0.0029118	478.75051267399823	97.004	0.72492	97.004	96.584	97.309	0					25	16	3	0	0	0	0.028476	1	10657	10657		35.618	0	1	144060	+		41384	20829	34157	34181	44798	44798					0.004019444638174718
NSRIVRLLA	9	Unmodified	_NSRIVRLLA_					0	0	0		AGTPBP1|p.G20R|1|0.48|ENSG00000135049|chr9:85692788-85692788|C/T|missense_variant	AGTPBP1|p.G20R|1|0.48|ENSG00000135049|chr9:85692788-85692788|C/T|missense_variant	AGTPBP1|p.G20R|1|0.48|ENSG00000135049|chr9:85692788-85692788|C/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	521.3297729492188	2	521.330008	1040.64546	1.5848	0.00082618	-3.3008	-0.0017208	-1.7161	-0.00089463	521.328146769431	122.18	0.50694	122.18	121.85	122.36	0					17	10	2	0	0	0	0.33652	1	14057	14057		58.782	2.0609	1	171290			41385	50	34158	34182	44799	44799					0.12676533216767893
NSRIVRLLA	9	Unmodified	_NSRIVRLLA_					0	0	0		AGTPBP1|p.G20R|1|0.48|ENSG00000135049|chr9:85692788-85692788|C/T|missense_variant	AGTPBP1|p.G20R|1|0.48|ENSG00000135049|chr9:85692788-85692788|C/T|missense_variant	AGTPBP1|p.G20R|1|0.48|ENSG00000135049|chr9:85692788-85692788|C/T|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.330008	1040.64546	-0.1673	-8.7217E-05	-6.1585	-0.0032106	-6.3258	-0.0032978	521.3266830948147	122.06	0.8415	121.85	121.33	122.17	-0.21803	-0.22136	-0.00041553	NaN	58.782	40	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25540			41386	50	34158	34182							0.12676533216767893
NSRIVRLLA	9	Unmodified	_NSRIVRLLA_					0	0	0		AGTPBP1|p.G20R|1|0.48|ENSG00000135049|chr9:85692788-85692788|C/T|missense_variant	AGTPBP1|p.G20R|1|0.48|ENSG00000135049|chr9:85692788-85692788|C/T|missense_variant	AGTPBP1|p.G20R|1|0.48|ENSG00000135049|chr9:85692788-85692788|C/T|missense_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	521.330008	1040.64546	1.4146	0.00073748	-7.9431	-0.004141	-6.5284	-0.0034035	521.3255779392166	123.14	0.78085	122.1	121.73	122.51	-1.0377	0.034019	-0.0022763	NaN	58.782	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28905			41387	50	34158	34182							0.12676533216767893
NSRIVRLLA	9	Unmodified	_NSRIVRLLA_					0	0	0		AGTPBP1|p.G20R|1|0.48|ENSG00000135049|chr9:85692788-85692788|C/T|missense_variant	AGTPBP1|p.G20R|1|0.48|ENSG00000135049|chr9:85692788-85692788|C/T|missense_variant	AGTPBP1|p.G20R|1|0.48|ENSG00000135049|chr9:85692788-85692788|C/T|missense_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	521.330008	1040.64546	-0.44691	-0.00023299	-6.0545	-0.0031564	-6.5014	-0.0033894	521.3264958975456	123.5	0.69305	122.14	121.8	122.5	-1.3666	0.070724	-0.00030712	NaN	58.782	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30450			41388	50	34158	34182							0.12676533216767893
NSRNLIITVRP	11	Unmodified	_NSRNLIITVRP_					0	0	0		ENSG00000124171|ENST00000371610|PARD6B	ENSG00000124171|ENST00000371610|PARD6B	ENSG00000124171|ENST00000371610|PARD6B	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8829956054688	2	641.883136	1281.75172	-5.3554	-0.0034376	4.4876	0.0028805	-0.86781	-0.00055703	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.72479	1	13372	13372		18.262	3.3972	1	804890			41389	3629	34159	34183	44800	44800					0.12211243991396259
NSRPISDLHY	10	Unmodified	_NSRPISDLHY_					0	0	0		ENST00000395169.8_2_4:87275719-87280813:-|nuORF;ENST00000513186.6_2_4:87275719-87515098:-|nuORF	ENST00000395169.8_2_4:87275719-87280813:-|nuORF	ENST00000395169.8_2_4:87275719-87280813:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	601.30419921875	2	601.301644	1200.58874	1.4821	0.00089119	0.24833	0.00014932	1.7304	0.0010405	601.30219782033	149.77	2.5731	149.77	149.4	151.97	0					182	51	8	0	0	0	0.6104	1	17678	17678		40.778	1.5253	1	11852000			41390	11284	34160	34184	44801	44801					-0.0035355913041712483
NSRRSQPLIS	10	Unmodified	_NSRRSQPLIS_					0	0	0		ENSG00000092470|ENST00000263795|WDR76	ENSG00000092470|ENST00000263795|WDR76	ENSG00000092470|ENST00000263795|WDR76	MULTI-MSMS	OvCa9_classI_Rep2	2	579.3224487304688	2	579.322911	1156.63127	-1.5587	-0.00090299	1.3959	0.0008087	-0.16277	-9.4294E-05	579.3236686827205	50.2	1.538	47.406	47.033	48.571	-2.794					84	30	4	0	0	0	0.58067	1	3231	3231		44.377	10.205	1	611210			41391	1896	34161	34185	44802	44802					0.05921835997810376
NSRSGSVRKLI	11	Unmodified	_NSRSGSVRKLI_					0	0	0			REV__nc|ENSG00000164318|Q63HQ2-3|EGFLAM	REV__nc|ENSG00000164318|Q63HQ2-3|EGFLAM	MULTI-MSMS	OvCa9_classI_Rep2	2	406.2440490722656	3	406.242199	1215.70477	1.7141	0.00069634	1.3752	0.00055865	3.0893	0.001255	406.2427161612467	82.036	1.3478	80.388	79.971	81.319	-1.6485					76	25	4	0	0	0	0.71831	1	6990	6990		23.378	1.5975	1	436340	+		41392	20975	34162	34186	44803	44803					0.10554384440297326
NSRSLPTLI	9	Unmodified	_NSRSLPTLI_					0	0	0		tr|A0A553SFQ5|A0A553SFQ5_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09335PE=4SV=1	tr|A0A553SFQ5|A0A553SFQ5_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09335PE=4SV=1	tr|A0A553SFQ5|A0A553SFQ5_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09335PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.794921875	2	500.792924	999.571294	0.3476	0.00017408	3.1428	0.0015739	3.4904	0.001748	500.79446400604274	110.01	4.1489	108.41	107.65	111.8	-1.6011					189	79	5	0	0	0	0.3076	1	10168	10168		62.107	4.2961	1	2535700			41393	33065	34163	34187	44804	44804					0.07149145334562945
NSRVEMKP	8	Unmodified	_NSRVEMKP_					0	0	0		nc|ENSG00000240583|P29972-4|AQP1;nc|ENSG00000240583|P29972-2|AQP1;nc|ENSG00000240583|P29972-3|AQP1;ENSG00000240583|ENST00000311813|AQP1	nc|ENSG00000240583|P29972-4|AQP1	nc|ENSG00000240583|P29972-4|AQP1	MULTI-SECPEP	OvCa9_classI_Rep3	3	481.2899475097656	2	480.750201	959.48585	-0.60597	-0.00029132	0.43066	0.00020704	-0.17531	-8.428E-05	480.75173872178794	94.229	0.25597	92.333	92.204	92.46	-1.8956					6	4	2	0	0	0	0.028476	1	6077	6077		35.618	5.1146	1	5867.7			41394	9342	34164	34188	44805	44805					0.00448656877256326
NSSFSKWNK	9	Unmodified	_NSSFSKWNK_					0	0	0			REV__nc|ENSG00000111729|Q9UMR7-4|CLEC4A	REV__nc|ENSG00000111729|Q9UMR7-4|CLEC4A	MULTI-MSMS	OvCa99_classI_Rep5	1	549.2718505859375	2	549.272355	1096.53016	1.3305	0.00073082	-3.5752	-0.0019637	-2.2446	-0.0012329	549.270246356825	147.9	0.77646	147.9	147.6	148.37	0					30	15	3	0	0	0	0.53483	1	17296	17296		39.253	4.1008	1	204750	+		41395	18055	34165	34189	44806	44806					-0.01424615704900134
NSSILTNCKSL	11	Unmodified	_NSSILTNCKSL_					0	0	0			REV__ENST00000490738.5_1_1:6931897-6932053:+|nuORF	REV__ENST00000490738.5_1_1:6931897-6932053:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	590.3170166015625	2	590.305538	1178.59652	1.2754	0.00075287	0.15884	9.3765E-05	1.4342	0.00084664	590.3058400339979	144.15	0.97807	144.15	143.81	144.79	0					38	19	3	0	0	0	0.41656	1	16840	16840		59.931	3.2097	1	257960	+		41396	26657	34166	34190	44807	44807					0.014368320748189944
NSSLLPPKAPE	11	Unmodified	_NSSLLPPKAPE_					0	0	0		ENSG00000164010|ENST00000372517|ERMAP	ENSG00000164010|ENST00000372517|ERMAP	ENSG00000164010|ENST00000372517|ERMAP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	577.3682250976562	2	576.816596	1151.61864	-1.2448	-0.00071801	0.64502	0.00037206	-0.59977	-0.00034595	576.8170874970186	127.71	0.50833	126.27	125.99	126.5	-1.4357					15	9	2	0	0	0	0.025445	1	12194	12194		50.034	9.2553	1	10777			41397	6392	34167	34191	44808	44808					0.04889379814903805
NSSPHLPKL	9	Unmodified	_NSSPHLPKL_					0	0	0		nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000100485|ENST00000216373|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	MULTI-MSMS	OvCa99_classI_Rep5	1	497.2865295410156	2	496.779816	991.545079	0.69323	0.00034438	1.5261	0.00075811	2.2193	0.0011025	496.7801088570681	81.412	0.6553	81.412	81.12	81.776	0					54	15	4	0	0	0	0.3076	1	8418	8418		62.107	5.6736	1	6629000			41398	2076	34168	34192	44809	44809					0.04896876163093111
NSSRLGAV	8	Unmodified	_NSSRLGAV_					0	0	0		Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|16|1|sense	Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|16|1|sense	Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|16|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	402.5761413574219	2	402.222134	802.429715	2.1605	0.00086899	-2.4247	-0.00097528	-0.26426	-0.00010629	402.22112045690307	47.663	0.70255	44.555	44.336	45.039	-3.1077					17	13	2	0	0	0	0.028476	1	2589	2589		7.1934	0	1	29309			41399	14371	34169	34193	44810	44810					0.02059772032089313
NSSRSERQKL	10	Unmodified	_NSSRSERQKL_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__nc|ENSG00000155657|Q8WZ42-6|TTN	MULTI-MSMS	OvCa9_classI_Rep4_	4	402.22021484375	3	402.217942	1203.632	1.2154	0.00048884	2.2272	0.00089583	3.4426	0.0013847	402.2187403099645	69.657	1.4135	66.176	65.861	67.275	-3.4812					83	28	4	0	0	0	0.44722	1	5237	5237		61.691	8.6023	1	720470	+		41400	28943	34170	34194	44811	44811					0.03832630646866164
NSSRSERQKL	10	Unmodified	_NSSRSERQKL_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__nc|ENSG00000155657|Q8WZ42-6|TTN	MULTI-MATCH	OvCa9_classI_Rep3	3		3	402.217942	1203.632	1.7394	0.0006996	1.2565	0.00050539	2.9959	0.001205	402.2184524746818	68.803	0.44823	65.988	65.863	66.312	-2.8144	-0.064084	-0.0017156	NaN	61.691	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9496.5	+		41401	28943	34170	34194							0.03832630646866164
NSSSKKSSD	9	Unmodified	_NSSSKKSSD_					0	0	0			REV__tr|A0A553SPL6|A0A553SPL6_NIACIPeptidaseOS=NialliacirculansOX=1397GN=CEQ21_26650PE=3SV=1	REV__tr|A0A553SPL6|A0A553SPL6_NIACIPeptidaseOS=NialliacirculansOX=1397GN=CEQ21_26650PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	469.2540283203125	2	470.222528	938.430503	-0.71379	-0.00033564	-0.90539	-0.00042574	-1.6192	-0.00076138	470.2221826427442	86.174	0.55186	83.953	83.785	84.337	-2.2204					13	10	2	0	0	0	0.027447	1	5152	5152		47.657	24.615	1	12723	+		41402	30547	34171	34195	44812	44812					-0.04117478109503736
NSTIYFILNI	10	Unmodified	_NSTIYFILNI_					0	0	0			REV__tr|A0A7D7A2L4|A0A7D7A2L4_9CLOTSignaltransductionhistidinekinasesubgroup3dimerisationandphosphoacceptordomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20510PE=4SV=1	REV__tr|A0A7D7A2L4|A0A7D7A2L4_9CLOTSignaltransductionhistidinekinasesubgroup3dimerisationandphosphoacceptordomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20510PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	598.3551635742188	2	599.329339	1196.64412	3.0122	0.0018053	-3.2331	-0.0019377	-0.22088	-0.00013238	599.326963897854	112.81	1.9187	111.74	111.41	113.33	-1.0753					89	37	4	0	0	0	0.027033	1	8401	8401		41.427	9.4718	1	134650	+		41403	32543	34172	34196	44813	44813					0.053668543373532884
NSTKDKLAD	9	Unmodified	_NSTKDKLAD_					0	0	0		tr|A0A553SQU3|A0A553SQU3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07295PE=4SV=1	tr|A0A553SQU3|A0A553SQU3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07295PE=4SV=1	tr|A0A553SQU3|A0A553SQU3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07295PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	495.296630859375	2	496.256371	990.498189	1.823	0.00090466	-3.8821	-0.0019265	-2.0591	-0.0010219	496.25401626429607	88.597	1.1326	87.23	86.789	87.922	-1.3676					46	22	3	0	0	0	0.027433	1	7783	7783		37.812	0	1	59683			41404	34197	34173	34197	44814	44814					0.0025597182127512497
NSTLASANVT	10	Unmodified	_NSTLASANVT_					0	0	0			REV__ENST00000452157.5_1_5:56218957-56234137:-|nuORF	REV__ENST00000452157.5_1_5:56218957-56234137:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	488.77215576171875	2	489.248546	976.482539	0.26692	0.00013059	-0.3185	-0.00015583	-0.051584	-2.5237E-05	489.2482504110891	56.477	0.60713	53.183	52.97	53.577	-3.2944					19	11	2	0	0	0	0.026573	1	3598	3598		70.816	12.586	1	45898	+		41405	20430	34174	34198	44815	44815					-0.006643146957458157
NSTLASANVT	10	Unmodified	_NSTLASANVT_					0	0	0			REV__ENST00000452157.5_1_5:56218957-56234137:-|nuORF	REV__ENST00000452157.5_1_5:56218957-56234137:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	489.248546	976.482539	-0.46946	-0.00022968	-0.78656	-0.00038482	-1.256	-0.0006145	489.2478436350348	56.219	0.44618	53.415	53.324	53.77	-2.804	0.11589	-0.00036887	NaN	70.816	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10187	+		41406	20430	34174	34198							-0.006643146957458157
NSTSLHVE	8	Unmodified	_NSTSLHVE_					0	0	0		L1PA15_dup4761|chrX:56137796-56140776:+|1.2704796762244717|0.2808252408673861|2.18|428.0|79|3|sense	L1PA15_dup4761|chrX:56137796-56140776:+|1.2704796762244717|0.2808252408673861|2.18|428.0|79|3|sense	L1PA15_dup4761|chrX:56137796-56140776:+|1.2704796762244717|0.2808252408673861|2.18|428.0|79|3|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	443.7171325683594	2	443.716882	885.41921	1.2208	0.00054171	-4.196	-0.0018618	-2.9751	-0.0013201	443.71494045417654	58.005	0.50463	58.005	57.732	58.237	0					20	11	2	0	0	0	0.64371	1	4896	4896		54.776	5.3348	1	3684400			41407	14668	34175	34199	44816	44816					-0.028082554129923665
NSVALKNAGLI	11	Unmodified	_NSVALKNAGLI_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.E2391Hfs*33|1|0.06|ENSG00000139618|chr13:32355023-32355024|-/CATGCTTTGGGTACCTGTAATCCCAGCACTTTGGCAG|frameshift_variant;BRCA2|p.S2697Kfs*31|1|0.46|ENSG00000139618|chr13:32363289-32363304|TGAGCGCAAATATATC/-|frameshift_variant;BRCA2|p.L3172Afs*44|1|0.79|ENSG00000139618|chr13:32396908-32396911|TACT/-|frameshift_variant;BRCA2|p.M3322*|1|0.04|ENSG00000139618|chr13:32398476-32398476|G/-|frameshift_variant;BRCA2|p.K1406Nfs*3|1|0.62|ENSG00000139618|chr13:32338571-32338574|AAAG/-|frameshift_variant;BRCA2|p.K1057Efs*10|1|0.19|ENSG00000139618|chr13:32337523-32337524|-/G|frameshift_variant;BRCA2|p.S1230Lfs*9|1|0.42|ENSG00000139618|chr13:32338041-32338041|T/-|frameshift_variant	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	MULTI-MSMS	OvCa9_classI_Rep3	3	550.3267211914062	2	550.327131	1098.63971	-1.5659	-0.00086175	0.7839	0.0004314	-0.78198	-0.00043035	550.3275336090328	86.284	1.4089	84.064	83.686	85.095	-2.2204					106	27	5	0	0	0	0.36853	2	5161	5161;5167		63.426	6.7054	1	3899600			41408	4788	34176	34200	44817;44818	44817					0.09433389914420331
NSVALKNAGLI	11	Unmodified	_NSVALKNAGLI_					0	0	0		ENSG00000139618|ENST00000380152|BRCA2;BRCA2|p.E2391Hfs*33|1|0.06|ENSG00000139618|chr13:32355023-32355024|-/CATGCTTTGGGTACCTGTAATCCCAGCACTTTGGCAG|frameshift_variant;BRCA2|p.S2697Kfs*31|1|0.46|ENSG00000139618|chr13:32363289-32363304|TGAGCGCAAATATATC/-|frameshift_variant;BRCA2|p.L3172Afs*44|1|0.79|ENSG00000139618|chr13:32396908-32396911|TACT/-|frameshift_variant;BRCA2|p.M3322*|1|0.04|ENSG00000139618|chr13:32398476-32398476|G/-|frameshift_variant;BRCA2|p.K1406Nfs*3|1|0.62|ENSG00000139618|chr13:32338571-32338574|AAAG/-|frameshift_variant;BRCA2|p.K1057Efs*10|1|0.19|ENSG00000139618|chr13:32337523-32337524|-/G|frameshift_variant;BRCA2|p.S1230Lfs*9|1|0.42|ENSG00000139618|chr13:32338041-32338041|T/-|frameshift_variant	ENSG00000139618|ENST00000380152|BRCA2	ENSG00000139618|ENST00000380152|BRCA2	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.3250122070312	2	550.327131	1098.63971	0.71282	0.00039229	-2.7777	-0.0015287	-2.0649	-0.0011364	550.3256260191897	86.705	1.5914	84.078	83.613	85.204	-2.6269					98	31	4	0	0	0	0.5804	1	7412	7412		46.457	2.0796	1	3279500			41409	4788	34176	34200	44819	44819					0.09433389914420331
NSVLITII	8	Unmodified	_NSVLITII_					0	0	0		tr|A0A7D6ZJ33|A0A7D6ZJ33_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06985PE=4SV=1	tr|A0A7D6ZJ33|A0A7D6ZJ33_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06985PE=4SV=1	tr|A0A7D6ZJ33|A0A7D6ZJ33_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06985PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	436.7748718261719	2	436.776211	871.537869	-1.3218	-0.00057733	-1.7819	-0.0007783	-3.1037	-0.0013556	436.77534043072393	144.04	2.131	143.81	143.2	145.33	-0.22697					119	42	4	0	0	0	0.74971	1	14438	14438		26.796	0	1	537180			41410	35634	34177	34201	44820	44820					0.09696143562666748
NSWHQVIL	8	Unmodified	_NSWHQVIL_					0	0	0		ENST00000499522.6_1_8:104178449-104258641:-|nuORF	ENST00000499522.6_1_8:104178449-104258641:-|nuORF	ENST00000499522.6_1_8:104178449-104258641:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.7894592285156	2	498.766709	995.518865	-0.80336	-0.00040069	-2.1589	-0.0010768	-2.9623	-0.0014775	498.7655247675918	116.24	0.54245	115.2	114.9	115.44	-1.0414					14	10	2	0	0	0	0.028476	1	8650	8650		79.451	13.554	1	11989			41411	12837	34178	34202	44821	44821					0.020926069916072265
NSYFSLAVL	9	Unmodified	_NSYFSLAVL_					0	0	0		ENSG00000088538|ENST00000266037|DOCK3;DOCK3|p.K1465Pfs*18|1|0.29|ENSG00000088538|chr3:51356230-51356231|-/TCCCCTCACCTTTCACACACAGCTTCCTTGGGGACCA|frameshift_variant	ENSG00000088538|ENST00000266037|DOCK3	ENSG00000088538|ENST00000266037|DOCK3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.7508239746094	2	507.26875	1012.52295	-0.37318	-0.0001893	-0.84495	-0.00042862	-1.2181	-0.00061792	507.2669336549573	79.011	0.47649	76.26	76.038	76.514	-2.7514					11	9	2	0	0	0	0.027462	1	6385	6385		21.96	0	1	19751			41412	1791	34179	34203	44822	44822					0.017186516946708252
NSYHKLILP	9	Unmodified	_NSYHKLILP_					0	0	0			REV__ENST00000555400.1_1_14:53521153-53527951:-|nuORF	REV__ENST00000555400.1_1_14:53521153-53527951:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.2805786132812	2	542.811116	1083.60768	0.35305	0.00019164	0.872	0.00047333	1.2251	0.00066497	542.8117190415716	101.55	0.97607	101.55	101.23	102.21	0					54	22	4	0	0	0	0.027441	1	11352	11352		29.15	0	1	3020200	+		41413	17427	34180	34204	44823	44823					0.06922022231287883
NSYVKKFSI	9	Unmodified	_NSYVKKFSI_					0	0	0		ENSG00000136842|ENST00000259365|TMOD1;nc|ENSG00000136842|P28289-2|TMOD1	ENSG00000136842|ENST00000259365|TMOD1	ENSG00000136842|ENST00000259365|TMOD1	MULTI-MSMS	OvCa9_classI_Rep3	3	543.302001953125	2	543.303124	1084.5917	1.5262	0.00082921	-1.5691	-0.00085247	-0.042823	-2.3266E-05	543.3020480782708	122.92	1.093	121.89	121.64	122.73	-1.0286					39	20	2	0	0	0	0.34132	1	9470	9470		58.23	3.4536	1	193750			41414	4522	34181	34205	44824	44824					0.05278315994382865
NTAAADKQFY	10	Unmodified	_NTAAADKQFY_					0	0	0		nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	nc|ENSG00000067066|P23497|SP100	MULTI-MSMS	OvCa99_classI_Rep5	1	564.7703247070312	2	564.769645	1127.52474	2.3227	0.0013118	0.15051	8.5003E-05	2.4732	0.0013968	564.7695886004549	92.948	0.70554	92.948	92.721	93.426	0					56	16	5	0	0	0	0.26424	1	10080	10080		85.161	12.282	1	7864900			41415	14886	34182	34206	44825	44825					-0.03392339287370305
NTAKRKLD	8	Unmodified	_NTAKRKLD_					0	0	0		ENST00000343889.8_1_1:2411150-2434522:+|nuORF;nc|ENSG00000149527|O75038-2|PLCH2;PLCH2|p.S1145Pfs*53|1|0.17|ENSG00000149527|chr1:2504393-2504393|C/-|frameshift_variant;nc|ENSG00000149527|O75038-4|PLCH2;nc|ENSG00000149527|O75038-3|PLCH2;ENSG00000149527|ENST00000378486|PLCH2	ENST00000343889.8_1_1:2411150-2434522:+|nuORF	ENST00000343889.8_1_1:2411150-2434522:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.3138122558594	2	473.277441	944.540328	1.7824	0.00084358	4.2792	0.0020252	6.0616	0.0028688	473.27925023609686	116.9	0.22446	116.9	116.77	117	0					6	4	2	0	0	0	0.028476	1	13372	13372		40.778	0.20554	1	49102			41416	5466	34183	34207	44826	44826					0.06583992020318874
NTALIVFVS	9	Unmodified	_NTALIVFVS_					0	0	0		nc|ENSG00000137491|O94956-3|SLCO2B1;ENSG00000137491|ENST00000289575|SLCO2B1;SLCO2B1|p.F356Vfs*3|1|0.04|ENSG00000137491|chr11:75188226-75188227|-/A|frameshift_variant;SLCO2B1|p.Q355Vfs*6|1|0.05|ENSG00000137491|chr11:75188225-75188226|-/GTGAGAG|frameshift_variant	nc|ENSG00000137491|O94956-3|SLCO2B1	nc|ENSG00000137491|O94956-3|SLCO2B1	MULTI-SECPEP	OvCa9_classI_Rep2	2	481.3125305175781	2	482.279118	962.543683	0.056948	2.7465E-05	0.18557	8.9497E-05	0.24252	0.00011696	482.27907883194297	111.26	1.6274	111.12	110.39	112.01	-0.13961					52	32	3	0	0	0	0.027455	1	10552	10552		42.396	0	1	67648			41417	4588	34184	34208	44827	44827					0.06091242074330694
NTALSQVQ	8	Unmodified	_NTALSQVQ_					0	0	0			REV__ENST00000550945.5_2_12:25205288-25205444:+|nuORF	REV__ENST00000550945.5_2_12:25205288-25205444:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	430.2409362792969	2	430.727249	859.439946	0.24716	0.00010646	-0.13391	-5.768E-05	0.11325	4.878E-05	430.7271092231902	32.724	0.53566	32.724	32.503	33.039	0					22	10	3	0	0	0	0.028476	1	1460	1460		17.468	0.10304	1	199530	+		41418	27481	34185	34209	44828	44828					0.004603349666695067
NTARYYAK	8	Unmodified	_NTARYYAK_					0	0	0		ENSG00000198796|ENST00000361673|ALPK2	ENSG00000198796|ENST00000361673|ALPK2	ENSG00000198796|ENST00000361673|ALPK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.77862548828125	2	493.756341	985.498129	-0.24287	-0.00011992	3.269	0.0016141	3.0262	0.0014942	493.7579170915425	52.95	0.51871	52.95	52.741	53.26	0					19	11	2	0	0	0	0.028476	1	4200	4200		38.806	1.647	1	569960			41419	8875	34186	34210	44829	44829					0.004800166119366622
NTCIYTEGWK	10	Unmodified	_NTCIYTEGWK_					0	0	0		ENSG00000237353|ENST00000457514|PATE4	ENSG00000237353|ENST00000457514|PATE4	ENSG00000237353|ENST00000457514|PATE4	MULTI-SECPEP	OvCa9_classI_Rep2	2	606.8333740234375	2	607.779156	1213.54376	1.2476	0.00075829	1.6269	0.00098881	2.8746	0.0017471	607.7799609713675	88.263	1.4722	86.895	86.351	87.823	-1.3676					49	29	2	0	0	0	0.026659	1	7662	7662		45.972	0	1	22327			41420	9316	34187	34211	44830	44830					-0.05447125987984691
NTCIYTEGWK	10	Unmodified	_NTCIYTEGWK_					0	0	0		ENSG00000237353|ENST00000457514|PATE4	ENSG00000237353|ENST00000457514|PATE4	ENSG00000237353|ENST00000457514|PATE4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	606.833984375	2	607.779156	1213.54376	0.49358	0.00029999	1.9219	0.0011681	2.4155	0.0014681	607.7803696929645	89.293	1.6377	86.69	86.034	87.672	-2.6027					62	32	3	0	0	0	0.026734	1	7590	7590		39.253	5.3312	1	90161			41421	9316	34187	34211	44831	44831					-0.05447125987984691
NTDLLQIVV	9	Unmodified	_NTDLLQIVV_					0	0	0			REV__nc|ENSG00000148600|Q96JP9-2|CDHR1	REV__nc|ENSG00000148600|Q96JP9-2|CDHR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3352355957031	2	507.795132	1013.57571	1.2695	0.00064462	0.89957	0.0004568	2.169	0.0011014	507.79540328842864	138.77	0.96269	138.77	138.4	139.37	0					49	19	4	0	0	0	0.027411	1	16263	16263		45.972	0	1	389320	+		41422	20116	34188	34212	44832	44832					0.06946609757483202
NTDMSADILS	10	Unmodified	_NTDMSADILS_					0	0	0		nc|ENSG00000255408|Q9Y5H8-2|PCDHA3;ENSG00000255408|ENST00000522353|PCDHA3	nc|ENSG00000255408|Q9Y5H8-2|PCDHA3	nc|ENSG00000255408|Q9Y5H8-2|PCDHA3	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.79150390625	2	533.739696	1065.46484	2.5874	0.001381	-3.3922	-0.0018105	-0.80474	-0.00042952	533.7378044054216	94.454	0.4257	94.454	94.264	94.69	0					19	9	3	0	0	0	0.02658	1	10303	10303		54.776	8.8244	1	710810			41423	9456	34189	34213	44833	44833					-0.06527398012917729
NTEFIQKVD	9	Unmodified	_NTEFIQKVD_					0	0	0		tr|A0A7D7AB36|A0A7D7AB36_9CLOTSugarkinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13815PE=3SV=1	tr|A0A7D7AB36|A0A7D7AB36_9CLOTSugarkinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13815PE=3SV=1	tr|A0A7D7AB36|A0A7D7AB36_9CLOTSugarkinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13815PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	546.32763671875	2	547.279846	1092.54514	-0.081035	-4.4349E-05	-0.99818	-0.00054628	-1.0792	-0.00059063	547.2794018395401	105.61	1.1458	104.26	103.73	104.87	-1.3482					34	21	2	0	0	0	0.027462	1	7398	7398		40.778	17.736	1	25728			41424	36213	34190	34214	44834	44834					0.002568313724395921
NTEKYGLLV	9	Unmodified	_NTEKYGLLV_					0	0	0		ENSG00000088538|ENST00000266037|DOCK3;DOCK3|p.K1465Pfs*18|1|0.29|ENSG00000088538|chr3:51356230-51356231|-/TCCCCTCACCTTTCACACACAGCTTCCTTGGGGACCA|frameshift_variant	ENSG00000088538|ENST00000266037|DOCK3	ENSG00000088538|ENST00000266037|DOCK3	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.7882690429688	2	518.787307	1035.56006	-1.0643	-0.00055213	0.37826	0.00019623	-0.68601	-0.00035589	518.7873587636142	80.937	1.7518	78.226	77.954	79.706	-2.7106					55	35	2	0	0	0	0.35444	1	6647	6647		56.721	0.28726	1	1005800			41425	1791	34191	34215	44835	44835					0.04370323240414109
NTETRIKGHS	10	Unmodified	_NTETRIKGHS_					0	0	0		ENST00000473406.5_1_1:76252445-76253285:+|nuORF	ENST00000473406.5_1_1:76252445-76253285:+|nuORF	ENST00000473406.5_1_1:76252445-76253285:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	571.7984619140625	2	571.799269	1141.58398	1.073	0.00061352	-0.011185	-6.3954E-06	1.0618	0.00060712	571.799303854714	143.26	1.1773	143.26	142.93	144.11	0					45	23	4	0	0	0	0.55109	1	16730	16730		47.96	5.5634	1	224360			41426	12409	34192	34216	44836	44836					0.018855567268019513
NTGDSVTFTF	10	Unmodified	_NTGDSVTFTF_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-MSMS	OvCa99_classI_Rep5	1	544.7503051757812	2	544.748379	1087.4822	2.0291	0.0011053	0.51405	0.00028003	2.5431	0.0013854	544.7485562546169	100.28	0.83061	100.28	99.939	100.77	0					35	18	3	0	0	0	0.22663	1	11113	11113		90.37	18.992	1	1085500	+		41427	19568	34193	34217	44837	44837					-0.05803734415599138
NTGGGQRGHGF	11	Unmodified	_NTGGGQRGHGF_					0	0	0		ENST00000429722.2_1_12:109530725-109531115:-|nuORF	ENST00000429722.2_1_12:109530725-109531115:-|nuORF	ENST00000429722.2_1_12:109530725-109531115:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7973022460938	2	544.255028	1086.4955	-0.18283	-9.9505E-05	-0.48285	-0.00026279	-0.66568	-0.0003623	544.2546035227525	67.56	0.23396	67.56	67.408	67.642	0					8	5	2	0	0	0	0.025656	1	6329	6329		26.063	6.0666	1	135880			41428	11781	34194	34218	44838	44838					-0.044284387930019875
NTGITTNTTAT	11	Unmodified	_NTGITTNTTAT_					0	0	0		ENST00000216277.12_1_14:96968904-96986484:+|nuORF	ENST00000216277.12_1_14:96968904-96986484:+|nuORF	ENST00000216277.12_1_14:96968904-96986484:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	547.7742919921875	2	547.769842	1093.52513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.87	1	138.38	137.88	138.88	-1.4952								0	0	0	0.19423	1	13641	13641		32.751	2.4328	1				41429	9670	34195	34219	44839	44839					-0.017889643581838754
NTGRWLVLD	9	Unmodified	_NTGRWLVLD_					0	0	0		nc|ENSG00000149499|Q32P44-2|EML3;ENSG00000149499|ENST00000394773|EML3;ENST00000460939.5_1_11:62371528-62373633:-|nuORF	nc|ENSG00000149499|Q32P44-2|EML3	nc|ENSG00000149499|Q32P44-2|EML3	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3162841796875	2	537.290548	1072.56654	0.90534	0.00048643	1.1361	0.00061041	2.0414	0.0010968	537.2912927479772	139.82	0.70572	139.82	139.46	140.17	0					22	14	3	0	0	0	0.027453	1	16344	16344		30.318	2.4355	1	77543			41430	5464	34196	34220	44840	44840					0.033162611917987306
NTIALYLWL	9	Unmodified	_NTIALYLWL_					0	0	0			REV__tr|A0A7D7A4G3|A0A7D7A4G3_9CLOTYcxBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01565PE=4SV=1	REV__tr|A0A7D7A4G3|A0A7D7A4G3_9CLOTYcxBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01565PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.7959594726562	2	553.815867	1105.61718	-0.057791	-3.2006E-05	-4.1696	-0.0023092	-4.2274	-0.0023412	553.8133967360432	76.441	1.1921	73.502	73.318	74.51	-2.9389					45	24	3	0	0	0	0.027462	1	6148	6148		35.618	0	1	178840	+		41431	32605	34197	34221	44841	44841					0.06859790516796238
NTIALYLWL	9	Unmodified	_NTIALYLWL_					0	0	0			REV__tr|A0A7D7A4G3|A0A7D7A4G3_9CLOTYcxBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01565PE=4SV=1	REV__tr|A0A7D7A4G3|A0A7D7A4G3_9CLOTYcxBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01565PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	553.815867	1105.61718	0.090586	5.0168E-05	0.54999	0.00030459	0.64058	0.00035476	554.3164338705368	73.618	0.34969	73.618	73.479	73.829	0	0.045994	0.0052647	NaN	49.442	9	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84095	+		41432	32605	34197	34221							0.06859790516796238
NTIALYLWL	9	Unmodified	_NTIALYLWL_					0	0	0			REV__tr|A0A7D7A4G3|A0A7D7A4G3_9CLOTYcxBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01565PE=4SV=1	REV__tr|A0A7D7A4G3|A0A7D7A4G3_9CLOTYcxBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01565PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	553.815867	1105.61718	0.14011	7.7596E-05	-4.346	-0.0024069	-4.2059	-0.0023293	553.8133953115345	75.45	1.1422	73.596	73.323	74.466	-1.854	0.024208	-0.00015832	NaN	49.442	51	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141240	+		41433	32605	34197	34221							0.06859790516796238
NTIDPSHPM	9	Unmodified	_NTIDPSHPM_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-MSMS	OvCa99_classI_Rep5	1	506.2327575683594	2	506.231842	1010.44913	-0.62625	-0.00031703	-0.075674	-3.8309E-05	-0.70193	-0.00035534	506.2316451870162	61.564	0.87765	61.564	61.245	62.122	0					58	20	4	0	0	0	0.053172	2	5446	5417;5446		116.9	50.276	1	5684300			41434	1849	34198	34222	44842;44843	44843					-0.05567639739308561
NTIDVEIDV	9	Unmodified	_NTIDVEIDV_					0	0	0			REV__tr|A0A7D7A0Q9|A0A7D7A0Q9_9CLOTGlutamatesynthaselargesubunitOS=ClostridiumintestinaleOX=36845GN=gltBPE=3SV=1	REV__tr|A0A7D7A0Q9|A0A7D7A0Q9_9CLOTGlutamatesynthaselargesubunitOS=ClostridiumintestinaleOX=36845GN=gltBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.28765869140625	2	509.258579	1016.50261	-0.85681	-0.00043634	2.3242	0.0011836	1.4674	0.00074728	509.25962304760935	34.185	0.61747	34.185	33.969	34.586	0					25	12	3	0	0	0	0.027462	1	1661	1661		15.642	0	1	331940	+		41435	32453	34199	34223	44844	44844					-0.0049856375580930035
NTIEELLVP	9	Unmodified	_NTIEELLVP_					0	0	0			REV__ENSG00000134987|ENST00000513710|WDR36	REV__ENSG00000134987|ENST00000513710|WDR36	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.7896728515625	2	514.28714	1026.55973	-0.063144	-3.2474E-05	2.9972	0.0015414	2.9341	0.001509	514.2887298425187	57.095	0.60326	57.095	56.918	57.522	0					18	13	2	0	0	0	0.027418	1	4769	4769		58.782	16.386	1	312640	+		41436	19245	34200	34224	44845	44845					0.047509035205848704
NTIHNVSI	8	Unmodified	_NTIHNVSI_					0	0	0			REV__ENST00000249700.8_1_15:52100692-52100794:+|nuORF	REV__ENST00000249700.8_1_15:52100692-52100794:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	449.2457580566406	2	449.243067	896.47158	2.8935	0.0012999	3.9791	0.0017876	6.8725	0.0030874	449.2446784121074	95.932	0.75992	95.932	95.699	96.459	0					42	17	4	0	0	0	0.70469	1	10482	10482		42.396	3.3746	1	1360100	+		41437	23855	34201	34225	44846	44846					0.019203277206202074
NTIIENPDV	9	Unmodified	_NTIIENPDV_					0	0	0		ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3352355957031	2	507.758746	1013.50294	0.99557	0.00050551	0.98013	0.00049767	1.9757	0.0010032	507.7594165613737	139.53	0.70505	139.53	139.07	139.78	0					27	14	3	0	0	0	0.027403	1	16263	16263		60.118	5.3419	1	54238			41438	2903	34202	34226	44847	44847					-0.003271440359526423
NTIIIMCFA	9	Oxidation (M)	_NTIIIM(Oxidation (M))CFA_		NTIIIM(1)CFA		NTIIIM(94)CFA	0	0	1		tr|A0A7D6VPP1|A0A7D6VPP1_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23675PE=4SV=1	tr|A0A7D6VPP1|A0A7D6VPP1_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23675PE=4SV=1	tr|A0A7D6VPP1|A0A7D6VPP1_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23675PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	521.2609252929688	2	521.259013	1040.50347	0.08431	4.3947E-05	1.9965	0.0010407	2.0808	0.0010846	521.2600174163526	140.91	2.3862	140.91	140.54	142.93	0					125	47	5	0	0	0	0.11171	3	16460	16436;16460;16485		94.006	22.711	1	3940500			41439	34783	34203	34227	44848;44849;44850	44849		764			-0.015157639121071043
NTIIVPTITKL	11	Unmodified	_NTIIVPTITKL_					0	0	0			REV__tr|A0A553SSP2|A0A553SSP2_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_03445PE=4SV=1	REV__tr|A0A553SSP2|A0A553SSP2_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_03445PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	606.3584594726562	2	606.881739	1211.74892	-1.3373	-0.00081159	1.0233	0.00062101	-0.31403	-0.00019058	606.8821942556914	102.99	1.2331	102.3	102.03	103.27	-0.68459					68	24	4	0	0	0	0.025541	1	9577	9577		80.455	16.921	1	220860	+		41440	30857	34204	34228	44851	44851					0.15151975813887475
NTIIVPTITKL	11	Unmodified	_NTIIVPTITKL_					0	0	0			REV__tr|A0A553SSP2|A0A553SSP2_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_03445PE=4SV=1	REV__tr|A0A553SSP2|A0A553SSP2_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_03445PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	606.881739	1211.74892	2.033	0.0012338	-2.4607	-0.0014934	-0.42768	-0.00025955	606.8801229325497	104.13	1.7172	102.7	102.39	104.11	-1.4347	0.13924	-0.0023855	NaN	80.455	79	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247510	+		41441	30857	34204	34228							0.15151975813887475
NTIKNWAKD	9	Unmodified	_NTIKNWAKD_					0	0	0		L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|48|1|sense	L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|48|1|sense	L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|48|1|sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	544.3031005859375	2	545.288005	1088.56146	-0.46185	-0.00025184	0.85967	0.00046877	0.39783	0.00021693	545.2885518508051	78.621	0.5534	76.268	75.9	76.453	-2.3527					17	10	2	0	0	0	0.027418	1	4165	4165		62.107	0	1	63646			41442	14734	34205	34229	44852	44852					0.020719573291671622
NTITIKNKN	9	Unmodified	_NTITIKNKN_					0	0	0			REV__ENSG00000044574|ENST00000324460|HSPA5	REV__ENSG00000044574|ENST00000324460|HSPA5	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3030395507812	2	523.303655	1044.59276	-2.1228	-0.0011108	2.0352	0.001065	-0.087543	-4.5811E-05	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.67104	1	11437	11437		23.523	3.0409	1	183010	+		41443	16650	34206	34230	44853	44853					0.07224530363282611
NTKLKLRF	8	Unmodified	_NTKLKLRF_					0	0	0		nc|ENSG00000122417|Q9ULJ1-2|ODF2L;nc|ENSG00000122417|Q9ULJ1|ODF2L	nc|ENSG00000122417|Q9ULJ1-2|ODF2L	nc|ENSG00000122417|Q9ULJ1-2|ODF2L	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.9534606933594	2	510.321651	1018.62875	-0.71163	-0.00036316	0.093818	4.7877E-05	-0.61781	-0.00031528	510.32168617485604	47.684	0.99236	44.974	44.687	45.679	-2.7097					35	19	3	0	0	0	0.028476	1	2999	2999		11.511	0	1	44604			41444	14991	34207	34231	44854	44854					0.12018032330797723
NTKPLILTGTA	11	Unmodified	_NTKPLILTGTA_					0	0	0		tr|A0A7D7A1A2|A0A7D7A1A2_9CLOTIronABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23875PE=3SV=1	tr|A0A7D7A1A2|A0A7D7A1A2_9CLOTIronABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23875PE=3SV=1	tr|A0A7D7A1A2|A0A7D7A1A2_9CLOTIronABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23875PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.3074340820312	2	564.834788	1127.65502	0.39184	0.00022132	-0.23995	-0.00013553	0.15189	8.5791E-05	564.8343621350862	117.8	0.99548	116.45	115.84	116.84	-1.3444					40	18	3	0	0	0	0.025912	1	10960	10960		16.717	0	1	65270			41445	36032	34208	34232	44855	44855					0.09630256711648144
NTKPLILTGTA	11	Unmodified	_NTKPLILTGTA_					0	0	0		tr|A0A7D7A1A2|A0A7D7A1A2_9CLOTIronABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23875PE=3SV=1	tr|A0A7D7A1A2|A0A7D7A1A2_9CLOTIronABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23875PE=3SV=1	tr|A0A7D7A1A2|A0A7D7A1A2_9CLOTIronABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23875PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	564.834788	1127.65502	-0.79742	-0.00045041	0.99386	0.00056136	0.19644	0.00011096	564.8350889317479	116.57	0.98967	116.44	115.97	116.96	-0.12869	-0.097079	0.00040019	NaN	33.922	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43886			41446	36032	34208	34232							0.09630256711648144
NTKTKFLN	8	Unmodified	_NTKTKFLN_					0	0	0		tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	483.2752380371094	2	483.274367	964.53418	2.8405	0.0013728	-1.4491	-0.00070032	1.3914	0.00067244	483.2735443089121	99.212	0.61076	99.212	98.877	99.488	0					40	14	4	0	0	0	0.65062	1	10973	10973		53.351	3.9099	1	3792700			41447	35500	34209	34233	44856	44856					0.05049473788812975
NTKVLDQYIF	10	Unmodified	_NTKVLDQYIF_					0	0	0		CON__Q3MHN5;CON__ENSEMBL:ENSBTAP00000018229	CON__Q3MHN5	CON__Q3MHN5	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.2256164550781	3	414.223923	1239.64994	-0.3305	-0.0001369	1.5432	0.00063923	1.2127	0.00050233	414.22450437616624	91.833	1.6665	89.291	88.912	90.578	-2.5425					92	32	4	0	0	0	0.61634	1	7965	7965		40.058	14.932	1	474150		+	41448	603	34210	34234	44857	44857					0.03969952848979119
NTKYKKGKL	9	Unmodified	_NTKYKKGKL_					0	0	0			REV__ENSG00000121957|ENST00000264126|GPSM2	REV__ENSG00000121957|ENST00000264126|GPSM2	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3310546875	2	540.332216	1078.64988	-1.5762	-0.00085169	-2.2598	-0.001221	-3.836	-0.0020727	540.3309156564876	138.68	4.2384	138.45	137.13	141.37	-0.22697					227	86	3	0	0	0	0.69403	1	13877	13877		19.997	0.89325	1	66382	+		41449	18569	34211	34235	44858	44858					0.11369997639667417
NTLHSKFLH	9	Unmodified	_NTLHSKFLH_					0	0	0		ENST00000523731.5_1_8:95871801-95871858:+|nuORF	ENST00000523731.5_1_8:95871801-95871858:+|nuORF	ENST00000523731.5_1_8:95871801-95871858:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.8325805664062	2	548.79854	1095.58253	-1.1553	-0.00063403	1.3664	0.00074989	0.21111	0.00011586	548.7991818604501	27.666	0.64936	27.666	27.491	28.14	0					30	12	4	0	0	0	0.027137	1	850	850		77.318	3.0625	1	396610			41450	13153	34212	34236	44859	44859					0.03855967428717122
NTLLLRRV	8	Unmodified	_NTLLLRRV_					0	0	0		ENSG00000166886|ENST00000300131|NAB2;nc|ENSG00000166886|Q15742-3|NAB2	ENSG00000166886|ENST00000300131|NAB2	ENSG00000166886|ENST00000300131|NAB2	MULTI-MSMS	OvCa9_classI_Rep2	2	492.81854248046875	2	492.819276	983.623999	-1.0524	-0.00051866	0.60887	0.00030006	-0.44358	-0.0002186	492.81937696825383	61.985	2.6287	59.225	58.882	61.511	-2.7593					139	50	4	0	0	0	0.73205	1	4641	4641		35.618	1.4457	1	798600			41451	6728	34213	34237	44860	44860					0.1315314818804154
NTLLSSTL	8	Unmodified	_NTLLSSTL_					0	0	0		ENST00000259523.10_1_8:128747712-128748060:+|nuORF	ENST00000259523.10_1_8:128747712-128748060:+|nuORF	ENST00000259523.10_1_8:128747712-128748060:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	424.7415771484375	2	424.739825	847.465098	-0.08791	-3.7339E-05	1.894	0.00080446	1.8061	0.00076712	424.7404827698809	61.888	1.6341	61.888	61.585	63.219	0					79	39	4	0	0	0	0.70469	1	5490	5490		42.396	1.8235	1	5904200			41452	9845	34214	34238	44861	44861					0.03526389769240268
NTLQFKPSPG	10	Unmodified	_NTLQFKPSPG_					0	0	0			REV__nc|ENSG00000113763|Q6ZN44-3|UNC5A	REV__nc|ENSG00000113763|Q6ZN44-3|UNC5A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.7706909179688	2	544.790381	1087.56621	-1.5357	-0.00083665	-2.018	-0.0010994	-3.5538	-0.0019361	544.788511093071	43.425	0.7793	40.417	40.063	40.842	-3.0074					31	14	4	0	0	0	0.026803	1	2066	2066		26.063	0	1	41015	+		41453	18170	34215	34239	44862	44862					0.025928414719373905
NTLTTTILD	9	Unmodified	_NTLTTTILD_					0	0	0		tr|A0A553SUM8|A0A553SUM8_NIACIPhosphateABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=pstBPE=4SV=1	tr|A0A553SUM8|A0A553SUM8_NIACIPhosphateABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=pstBPE=4SV=1	tr|A0A553SUM8|A0A553SUM8_NIACIPhosphateABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=pstBPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	495.7727355957031	2	496.268947	990.523341	-0.33368	-0.00016559	-2.8459	-0.0014123	-3.1796	-0.0015779	496.2671690476795	80.832	0.8743	78.509	78.182	79.057	-2.3226					30	16	4	0	0	0	0.027462	1	4418	4418		39.253	3.6345	1	60055			41454	34624	34216	34240	44863	44863					0.027700266238639415
NTLVNVLYI	9	Unmodified	_NTLVNVLYI_					0	0	0		ENST00000506586.1_1_5:93928514-93929327:+|nuORF	ENST00000506586.1_1_5:93928514-93929327:+|nuORF	ENST00000506586.1_1_5:93928514-93929327:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	524.8055419921875	2	524.8055	1047.59645	0.75625	0.00039688	-1.5948	-0.00083698	-0.83859	-0.0004401	524.8046333600537	91.954	3.2465	90.719	90.272	93.519	-1.2355					182	62	5	0	0	0	0.33652	1	8226	8226		58.782	0.55203	1	5304800			41455	12911	34217	34241	44864	44864					0.07455200137110296
NTMHWLMIVT	10	Unmodified	_NTMHWLMIVT_					0	0	0			REV__ENSG00000186136|ENST00000334266|TAS2R42	REV__ENSG00000186136|ENST00000334266|TAS2R42	MULTI-SECPEP	OvCa99_classI_Rep5	1	622.3203735351562	2	623.309569	1244.60458	1.4908	0.00092923	-1.6049	-0.0010003	-0.1141	-7.1119E-05	623.3080749571233	135.25	1.0742	135.25	134.43	135.5	0					39	23	3	0	0	0	0.026968	1	15786	15786		36.447	0	1	252030	+		41456	22559	34218	34242	44865	44865					-0.007933122094073042
NTMPFAILN	9	Unmodified	_NTMPFAILN_					0	0	0		tr|A0A553SSR1|A0A553SSR1_NIACIMannosylglyceratehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_03625PE=3SV=1	tr|A0A553SSR1|A0A553SSR1_NIACIMannosylglyceratehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_03625PE=3SV=1	tr|A0A553SSR1|A0A553SSR1_NIACIMannosylglyceratehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_03625PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.7872009277344	2	510.762778	1019.511	-1.1305	-0.00057743	-2.2187	-0.0011333	-3.3493	-0.0017107	511.26426966026713	99.928	0.24889	97.603	97.468	97.717	-2.3253					6	4	2	0	0	0	0.027462	1	8927	8927		39.253	7.298	1	5638.3			41457	34405	34219	34243	44866	44866					0.002027116798331008
NTNCQESTVT	10	Unmodified	_NTNCQESTVT_					0	0	0			REV__ENSG00000188994|ENST00000369577|ZNF292	REV__ENSG00000188994|ENST00000369577|ZNF292	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.7913818359375	2	548.732403	1095.45025	1.6041	0.00088022	0.78296	0.00042964	2.3871	0.0013099	548.7329321132192	74.794	0.28603	74.794	74.676	74.962	0					13	6	3	0	0	0	0.026968	1	7434	7434		22.58	1.6327	1	266060	+		41458	22753	34220	34244	44867	44867					-0.0936547016106033
NTNIGDCIQL	10	Unmodified	_NTNIGDCIQL_					0	0	0			REV__nc|ENSG00000147180|Q9Y462|ZNF711	REV__nc|ENSG00000147180|Q9Y462|ZNF711	MULTI-MSMS	OvCa99_classI_Rep5	1	545.76416015625	2	545.763506	1089.51246	-0.37661	-0.00020554	0.80134	0.00043734	0.42472	0.0002318	545.7634424748566	58.798	0.71637	58.798	58.403	59.12	0					38	17	3	0	0	0	0.42082	1	5017	5017		65.465	1.2581	1	2088900	+		41459	20050	34221	34245	44868	44868					-0.028716990220800653
NTNIGDCIQL	10	Unmodified	_NTNIGDCIQL_					0	0	0			REV__nc|ENSG00000147180|Q9Y462|ZNF711	REV__nc|ENSG00000147180|Q9Y462|ZNF711	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	545.763506	1089.51246	-0.37661	-0.00020554	0.80134	0.00043734	0.42472	0.0002318	545.7634424748566	58.798	0.71637	58.798	58.403	59.12	0	0.21648	0.00069773	NaN	65.465	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2088900	+		41460	20050	34221	34245							-0.028716990220800653
NTNIGDCIQL	10	Unmodified	_NTNIGDCIQL_					0	0	0			REV__nc|ENSG00000147180|Q9Y462|ZNF711	REV__nc|ENSG00000147180|Q9Y462|ZNF711	MULTI-MATCH	OvCa9_classI_Rep2	2		2	545.763506	1089.51246	-1.3322	-0.00072709	0.37679	0.00020564	-0.95545	-0.00052145	545.7636732388773	61.265	0.84175	58.505	58.04	58.882	-2.7593	-0.076169	0.00023433	NaN	65.465	18	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31644	+		41461	20050	34221	34245							-0.028716990220800653
NTNIGDCIQL	10	Unmodified	_NTNIGDCIQL_					0	0	0			REV__nc|ENSG00000147180|Q9Y462|ZNF711	REV__nc|ENSG00000147180|Q9Y462|ZNF711	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	545.763506	1089.51246	-0.40997	-0.00022375	-0.31715	-0.00017309	-0.72712	-0.00039684	545.763096734976	61.899	1.0125	58.441	58.197	59.21	-3.4577	-0.14031	-0.00052313	NaN	65.465	37	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189880	+		41462	20050	34221	34245							-0.028716990220800653
NTNIGKVAN	9	Unmodified	_NTNIGKVAN_					0	0	0		ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	ENSG00000072501|ENST00000322213|SMC1A	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.7585754394531	2	465.753798	929.493044	-0.14672	-6.8337E-05	0.67408	0.00031396	0.52736	0.00024562	465.7540223499806	77.998	1.6308	76.209	75.937	77.568	-1.7894					61	31	3	0	0	0	0.027462	1	6523	6523		27.882	0	1	30566			41463	1474	34222	34246	44869	44869					0.025477127493331864
NTPKAKSMS	9	Unmodified	_NTPKAKSMS_					0	0	0			REV__tr|A0A553SKY1|A0A553SKY1_NIACIStage0sporulationproteinAOS=NialliacirculansOX=1397GN=spo0APE=4SV=1	REV__tr|A0A553SKY1|A0A553SKY1_NIACIStage0sporulationproteinAOS=NialliacirculansOX=1397GN=spo0APE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.2494201660156	2	482.250034	962.485516	-0.20781	-0.00010022	-3.6122	-0.001742	-3.82	-0.0018422	482.24819323476015	62.118	1.2056	58.66	58.197	59.403	-3.4577					80	24	4	0	0	0	0.37135	1	4330	4330		54.776	5.3348	1	654250	+		41464	30166	34223	34247	44870	44870					0.002772371574110366
NTPVKDVVEII	11	Unmodified	_NTPVKDVVEII_					0	0	0		tr|A0A553SQH0|A0A553SQH0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07680PE=4SV=1	tr|A0A553SQH0|A0A553SQH0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07680PE=4SV=1	tr|A0A553SQH0|A0A553SQH0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07680PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	410.20416259765625	3	409.571211	1225.6918	0.56827	0.00023275	0.87577	0.00035869	1.444	0.00059144	409.57153798611074	61.422	0.47151	61.422	61.113	61.585	0					18	10	3	0	0	0	0.02595	1	5407	5407		21.032	0	1	229170			41465	34161	34224	34248	44871	44871					0.08798508537529415
NTPVNKAEVVS	11	Unmodified	_NTPVNKAEVVS_					0	0	0			REV__ENST00000370025.8_1_1:109242418-109242589:+|nuORF	REV__ENST00000370025.8_1_1:109242418-109242589:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	578.8572387695312	2	579.311677	1156.6088	-0.80392	-0.00046572	3.7659	0.0021816	2.9619	0.0017159	579.3132149131953	74.73	0.38927	71.5	71.289	71.678	-3.2308					11	7	2	0	0	0	0.025418	1	5872	5872		32.751	21.115	1	34779	+		41466	24953	34225	34249	44872	44872					0.03676191809518059
NTQLELNIT	9	Unmodified	_NTQLELNIT_					0	0	0		ENSG00000243710|ENST00000372492|CFAP57	ENSG00000243710|ENST00000372492|CFAP57	ENSG00000243710|ENST00000372492|CFAP57	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.2908325195312	2	523.279846	1044.54514	0.82677	0.00043263	0.35006	0.00018318	1.1768	0.00061581	523.2801603005028	146.1	0.54886	146.1	145.83	146.38	0					16	10	2	0	0	0	0.027462	1	17093	17093		23.523	3.0409	1	52950			41467	9382	34226	34250	44873	44873					0.02464831372435583
NTQMTVLGFF	10	Unmodified	_NTQMTVLGFF_					0	0	0			REV__ENSG00000159788|ENST00000336727|RGS12	REV__ENSG00000159788|ENST00000336727|RGS12	MULTI-SECPEP	OvCa9_classI_Rep4_	4	578.8572387695312	2	579.286617	1156.55868	-0.5729	-0.00033187	-0.4974	-0.00028814	-1.0703	-0.00062001	579.2861777106978	75.122	1.1131	71.891	71.434	72.547	-3.2308					37	22	3	0	0	0	0.026734	1	5872	5872		31.53	1.2121	1	61155	+		41468	20627	34227	34251	44874	44874					-0.013336341199874369
NTRMVIAGLF	10	Oxidation (M)	_NTRM(Oxidation (M))VIAGLF_		NTRM(1)VIAGLF		NTRM(77)VIAGLF	0	0	1		ENST00000369982.4_1_X:153238261-153247514:+|nuORF	ENST00000369982.4_1_X:153238261-153247514:+|nuORF	ENST00000369982.4_1_X:153238261-153247514:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	569.3084106445312	2	569.307884	1136.60121	-0.075114	-4.2763E-05	-2.9326	-0.0016695	-3.0077	-0.0017123	569.3061195246104	105.02	1.1257	105.02	104.58	105.7	0					81	25	4	0	0	0	0.32926	1	11806	11806		77.318	9.8239	1	8871400			41469	10913	34228	34252	44875	44875		310			0.038377610082534375
NTSDQLILK	9	Unmodified	_NTSDQLILK_					0	0	0			REV__tr|A0A7D6ZIE5|A0A7D6ZIE5_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03880PE=3SV=1	REV__tr|A0A7D6ZIE5|A0A7D6ZIE5_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03880PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.3013305664062	2	516.290214	1030.56587	-0.64833	-0.00033473	3.6379	0.0018782	2.9896	0.0015435	516.7945148340646	104.56	0.73402	102.44	102.01	102.74	-2.1192					13	13	2	0	0	0	0.027462	1	9501	9501		26.693	17.999	1	13098	+		41470	32052	34229	34253	44876	44876					0.051814217520814054
NTSGRESAQCI	11	Unmodified	_NTSGRESAQCI_					0	0	0		ENST00000397289.6_1_22:36541569-36545150:-|nuORF;ENST00000349314.6_1_22:36541572-36556848:-|nuORF	ENST00000397289.6_1_22:36541569-36545150:-|nuORF	ENST00000397289.6_1_22:36541569-36545150:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.2871704101562	2	583.266944	1164.51934	0.11705	6.8271E-05	0.50378	0.00029384	0.62083	0.00036211	583.267268411963	67.303	0.43369	67.303	67.055	67.489	0					19	10	3	0	0	0	0.025701	1	6278	6278		29.17	0	1	380790			41471	10644	34230	34254	44877	44877					-0.05634386141491632
NTSPHIKET	9	Unmodified	_NTSPHIKET_					0	0	0			REV__MUC16|p.S9810T|1|0.41|ENSG00000181143|chr19:8947342-8947342|A/T|missense_variant	REV__MUC16|p.S9810T|1|0.41|ENSG00000181143|chr19:8947342-8947342|A/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.271728515625	2	513.764363	1025.51417	2.2837	0.0011733	3.3064	0.0016987	5.5901	0.002872	513.7662210036555	108.15	1.0298	108.15	107.86	108.89	0					48	23	3	0	0	0	0.027462	1	12250	12250		45.972	6.7194	1	2398600	+		41472	28685	34231	34255	44878	44878					0.0024367805817746557
NTSPQPQTNSL	11	Unmodified	_NTSPQPQTNSL_					0	0	0			REV__nc|ENSG00000184634|Q93074-3|MED12	REV__nc|ENSG00000184634|Q93074-3|MED12	MULTI-MSMS	OvCa99_classI_Rep5	1	593.792724609375	2	593.788566	1185.56258	1.5216	0.00090351	4.3784	0.0025998	5.9	0.0035033	593.7910926846597	109.84	0.67464	109.84	109.64	110.31	0					32	14	3	0	0	0	0.4397	1	12461	12461		58.246	1.5252	1	1545800	+		41473	22444	34232	34256	44879	44879					-0.022778730925665513
NTSPQPQTNSL	11	Unmodified	_NTSPQPQTNSL_					0	0	0			REV__nc|ENSG00000184634|Q93074-3|MED12	REV__nc|ENSG00000184634|Q93074-3|MED12	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	593.788566	1185.56258	1.5216	0.00090351	4.3784	0.0025998	5.9	0.0035033	593.7910926846597	109.84	0.67464	109.84	109.64	110.31	0	0	0	NaN	58.246	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1545800	+		41474	22444	34232	34256							-0.022778730925665513
NTSQPDPSR	9	Unmodified	_NTSQPDPSR_					0	0	0		nc|ENSG00000204183|Q5U4N7|GDF5-AS1	nc|ENSG00000204183|Q5U4N7|GDF5-AS1	nc|ENSG00000204183|Q5U4N7|GDF5-AS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.2591552734375	2	501.23597	1000.45739	1.1965	0.00059972	-1.7491	-0.00087671	-0.55261	-0.00027699	501.23495816581976	143.76	0.39636	143.76	143.46	143.86	0					9	7	2	0	0	0	0.027462	1	16796	16796		42.864	5.7052	1	16187			41475	15266	34233	34257	44880	44880					-0.04282369498321259
NTTKIQKVN	9	Unmodified	_NTTKIQKVN_					0	0	0			REV__nc|ENSG00000078269|O15056-3|SYNJ2	REV__nc|ENSG00000078269|O15056-3|SYNJ2	MSMS	OvCa9_classI_Rep4_	4	523.3024291992188	2	523.303655	1044.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.63	1	139.13	138.63	139.63	-1.4952								0	0	0	0.18234	1	13726	13726		31.53	2.3598	1		+		41476	17022	34234	34258	44881	44881					0.07224530363305348
NTTLLVLVT	9	Unmodified	_NTTLLVLVT_					0	0	0			REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.29888916015625	2	487.30005	972.585547	-1.2796	-0.00062354	-1.8069	-0.00088051	-3.0865	-0.0015041	487.29906414689214	146.58	1.2256	145.15	144.7	145.92	-1.4357					56	23	3	0	0	0	0.69123	1	14431	14431		20.947	4.4738	1	319100	+		41477	16748	34235	34259	44882	44882					0.09815797762848888
NTVPLTPPN	9	Unmodified	_NTVPLTPPN_					0	0	0			REV__ENST00000590513.2_1_17:40704842-40705703:-|nuORF	REV__ENST00000590513.2_1_17:40704842-40705703:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.2937316894531	2	476.758549	951.502546	0.10147	4.8377E-05	0.0016731	7.9767E-07	0.10314	4.9175E-05	476.75844923625095	74.483	1.245	71.252	70.816	72.061	-3.2308					41	25	2	0	0	0	0.027462	1	5917	5917		27.882	1.1893	1	122720	+		41478	27919	34236	34260	44883	44883					0.0248548103485291
NTVPRTRKQII	11	Unmodified	_NTVPRTRKQII_					0	0	0		ENST00000557589.1_1_12:56815505-56817595:-|nuORF;nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS;ENST00000555808.1_1_12:56815681-56815917:-|nuORF	ENST00000557589.1_1_12:56815505-56817595:-|nuORF	ENST00000557589.1_1_12:56815505-56817595:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	441.7688293457031	3	442.605249	1324.79392	-6.6333	-0.0029359	-1.9678	-0.00087095	-8.6011	-0.0038069	442.604157201774	164.17	0.23785	162.53	162.39	162.63	-1.638					6	5	2	0	0	0	0.02616	1	16214	16214		25.068	11.56	1	30631			41479	2831	34237	34261	44884	44884					0.14451219399825277
NTVPRTRKQII	11	Unmodified	_NTVPRTRKQII_					0	0	0		ENST00000557589.1_1_12:56815505-56817595:-|nuORF;nc|ENSG00000111602|Q9UNS1-2|TIMELESS;ENSG00000111602|ENST00000553532|TIMELESS;ENST00000555808.1_1_12:56815681-56815917:-|nuORF	ENST00000557589.1_1_12:56815505-56817595:-|nuORF	ENST00000557589.1_1_12:56815505-56817595:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		3	442.605249	1324.79392	-6.5168	-0.0028844	-2.8691	-0.0012699	-9.3859	-0.0041542	442.6039298762104	163.81	0.46291	162.42	162.1	162.56	-1.3925	-0.055839	-0.00021237	NaN	14.779	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33239			41480	2831	34237	34261							0.14451219399825277
NTVYPICTGHQ	11	Unmodified	_NTVYPICTGHQ_					0	0	0			REV__L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|110|2|sense	REV__L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|110|2|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	411.52880859375	3	411.529129	1231.56556	0.45002	0.0001852	-0.26541	-0.00010922	0.18461	7.5974E-05	411.52896169371536	35.638	4.0304	35.638	35.475	39.505	0					176	88	2	0	0	0	0.71338	1	1812	1812		25.068	0.83596	1	804370	+		41481	28521	34238	34262	44885	44885					-0.04096321239421741
NTWIEATLPL	10	Unmodified	_NTWIEATLPL_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2;nc|ENSG00000137501|Q9HCH5-12|SYTL2;nc|ENSG00000137501|Q9HCH5-11|SYTL2;nc|ENSG00000137501|Q9HCH5-7|SYTL2;nc|ENSG00000137501|Q9HCH5-8|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-MSMS	OvCa9_classI_Rep2	2	579.309326171875	2	579.313689	1156.61282	-0.99433	-0.00057603	-3.0152	-0.0017467	-4.0095	-0.0023228	579.3119014879636	98.774	1.8386	97.881	97.41	99.248	-0.89306					101	36	5	0	0	0	0.22511	1	8999	8999		90.601	21.755	1	886160			41482	4592	34239	34263	44886	44886					0.040782813032365084
NTWVLIGI	8	Unmodified	_NTWVLIGI_					0	0	0		ENSG00000141086|ENST00000574481|CTRL	ENSG00000141086|ENST00000574481|CTRL	ENSG00000141086|ENST00000574481|CTRL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	457.272216796875	2	458.268553	914.522553	-1.3408	-0.00061444	0.77381	0.00035461	-0.56698	-0.00025983	458.26719802661125	72.535	0.43925	69.139	68.862	69.301	-3.3961					16	8	3	0	0	0	0.028476	1	5547	5547		18.324	0	1	83870			41483	4893	34240	34264	44887	44887					0.06187276765479055
NTYEYKFKIW	10	Unmodified	_NTYEYKFKIW_					0	0	0			REV__tr|A0A7D6ZMI4|A0A7D6ZMI4_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12050PE=3SV=1	REV__tr|A0A7D6ZMI4|A0A7D6ZMI4_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12050PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.25262451171875	3	464.571322	1390.69214	-0.14961	-6.9503E-05	-3.6711	-0.0017055	-3.8207	-0.001775	464.5695616730016	57.349	0.91743	54.004	53.628	54.546	-3.3449					25	17	2	0	0	0	0.02678	1	3769	3769		29.551	2.801	1	26820	+		41484	32107	34241	34265	44888	44888					0.012419282573773671
NTYGKLKIVE	10	Unmodified	_NTYGKLKIVE_					0	0	0			REV__ENST00000542765.4_1_12:21788478-21790169:-|nuORF	REV__ENST00000542765.4_1_12:21788478-21790169:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.2581176757812	2	582.834788	1163.65502	1.3404	0.00078123	1.6138	0.00094057	2.9542	0.0017218	583.3349722465119	129.88	0.42691	129.88	129.63	130.06	0					13	8	2	0	0	0	0.026694	1	15067	15067		46.457	7.2039	1	34631	+		41485	18051	34242	34266	44889	44889					0.07974256711577254
NVAIFRPHA	9	Unmodified	_NVAIFRPHA_					0	0	0		ENST00000321935.10_1_1:159770332-159778007:+|nuORF	ENST00000321935.10_1_1:159770332-159778007:+|nuORF	ENST00000321935.10_1_1:159770332-159778007:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.2446899414062	2	512.787976	1023.5614	1.9142	0.00098158	-0.84853	-0.00043512	1.0657	0.00054647	512.7874123824364	136.43	0.38019	136.43	136.3	136.68	0					10	7	2	0	0	0	0.027433	1	15906	15906		38.806	0	1	29744			41486	10380	34243	34267	44890	44890					0.05056002119840741
NVALRRHDV	9	Unmodified	_NVALRRHDV_					0	0	0			REV__INTS4-CYP2R1|1|fusion	REV__INTS4-CYP2R1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3097534179688	2	540.307064	1078.59957	1.25	0.00067539	1.6035	0.00086637	2.8535	0.0015418	540.3077955858466	119.23	3.2776	118.2	117.78	121.06	-1.0271					179	64	5	0	0	0	0.50149	1	9151	9151		42.396	1.618	1	415420	+		41487	28310	34244	34268	44891	44891					0.06341888034512522
NVAPNPLSL	9	Unmodified	_NVAPNPLSL_					0	0	0		ENST00000464590.1_1_11:3844931-3845577:+|nuORF	ENST00000464590.1_1_11:3844931-3845577:+|nuORF	ENST00000464590.1_1_11:3844931-3845577:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.2879943847656	2	462.761092	923.507631	-1.0475	-0.00048474	-2.0833	-0.00096409	-3.1308	-0.0014488	462.7614764461919	99.323	0.6235	96.997	96.692	97.315	-2.3253					14	11	2	0	0	0	0.027426	1	8836	8836		66.429	11.653	1	9246.2			41488	12257	34245	34269	44892	44892					0.042817848974891604
NVAQLIESR	9	Unmodified	_NVAQLIESR_					0	0	0			REV__tr|A0A553SNX0|A0A553SNX0_NIACIIsoprenyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_25335PE=3SV=1	REV__tr|A0A553SNX0|A0A553SNX0_NIACIIsoprenyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_25335PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.2782592773438	2	515.288005	1028.56146	-0.95177	-0.00049044	3.7288	0.0019214	2.7771	0.001431	515.7923499500616	65.768	0.87373	62.283	61.791	62.665	-3.4854					35	17	3	0	0	0	0.027452	1	4697	4697		49.536	16.786	1	49325	+		41489	30469	34246	34270	44893	44893					0.04831957329201941
NVASLSTMDV	10	Unmodified	_NVASLSTMDV_					0	0	0			REV__nc|ENSG00000184465|A2RRH5-2|WDR27	REV__nc|ENSG00000184465|A2RRH5-2|WDR27	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.7550048828125	2	518.752607	1035.49066	1.6749	0.00086885	-2.9751	-0.0015433	-1.3002	-0.00067448	519.2532689150369	98.723	0.50089	98.723	98.376	98.877	0					17	11	2	0	0	0	0.02658	1	10871	10871		37.812	14.289	1	321630	+		41490	22431	34247	34271	44894	44894					-0.025665037706403382
NVCGWRRAR	9	Unmodified	_NVCGWRRAR_					0	0	0		ENST00000484875.5_1_20:46415145-46415340:-|nuORF	ENST00000484875.5_1_20:46415145-46415340:-|nuORF	ENST00000484875.5_1_20:46415145-46415340:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.35009765625	2	559.293434	1116.57231	1.8414	0.0010299	-1.4134	-0.00079051	0.428	0.00023938	559.2927566348668	147.02	0.49049	147.02	146.87	147.36	0					15	9	2	0	0	0	0.027462	1	17228	17228		21.96	3.6355	1	47244			41491	12605	34248	34272	44895	44895					0.018690812224804176
NVDNVLAIN	9	Unmodified	_NVDNVLAIN_					0	0	0			REV__nc|ENSG00000071889|P98173-2|FAM3A	REV__nc|ENSG00000071889|P98173-2|FAM3A	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.3097229003906	2	486.261456	970.50836	2.5657	0.0012476	2.9883	0.0014531	5.554	0.0027007	486.26262942057105	88.768	0.72711	88.768	88.508	89.235	0					24	17	2	0	0	0	0.027462	1	9424	9424		39.253	5.0803	1	306450	+		41492	28730	34249	34273	44896	44896					0.021925795464994735
NVDRIRVI	8	Unmodified	_NVDRIRVI_					0	0	0			REV__nc|ENSG00000136099|O95206-2|PCDH8	REV__nc|ENSG00000136099|O95206-2|PCDH8	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.8026428222656	2	492.801083	983.587613	0.48653	0.00023976	-1.4785	-0.00072861	-0.99198	-0.00048885	492.8003668451582	60.85	2.2415	57.42	57.095	59.336	-3.43					111	45	3	0	0	0	0.70469	1	4178	4178		42.396	8.2236	1	4101800	+		41493	19357	34250	34274	44897	44897					0.09516271291329303
NVEIHQTL	8	Unmodified	_NVEIHQTL_					0	0	0		nc|ENSG00000198467|P07951-3|TPM2;nc|ENSG00000198467|P07951-2|TPM2;ENST00000378300.9_1_9:35682080-35682179:-|nuORF	nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000198467|P07951-3|TPM2	MULTI-MSMS	OvCa99_classI_Rep5	1	477.25750732421875	2	477.256174	952.497795	-0.47139	-0.00022497	0.59097	0.00028204	0.11958	5.7069E-05	477.25632858621975	64.344	1.0985	64.344	64.091	65.19	0					60	26	4	0	0	0	0.28381	2	5843	5832;5843		110.12	27.815	1	2637100		+	41494	15257	34251	34275	44898;44899	44899					0.019645968920940504
NVEMKEKL	8	Unmodified	_NVEMKEKL_					0	0	0		nc|ENSG00000152969|Q96N16|JAKMIP1;ENSG00000152969|ENST00000409021|JAKMIP1;nc|ENSG00000152969|Q96N16-6|JAKMIP1;nc|ENSG00000152969|Q96N16-7|JAKMIP1;nc|ENSG00000152969|Q96N16-5|JAKMIP1;nc|ENSG00000152969|Q96N16-3|JAKMIP1;JAKMIP1|p.R424Sfs*9|1|0.04|ENSG00000152969|chr4:6078969-6078970|-/GAATA|frameshift_variant;nc|ENSG00000152969|Q96N16-4|JAKMIP1	nc|ENSG00000152969|Q96N16|JAKMIP1	nc|ENSG00000152969|Q96N16|JAKMIP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.78594970703125	2	495.76806	989.521567	1.9018	0.00094283	0.63646	0.00031554	2.5382	0.0012584	495.7683014504721	96.99	0.72644	96.99	96.753	97.479	0					26	16	3	0	0	0	0.028476	1	10614	10614		44.117	0	1	471350			41495	5652	34252	34276	44900	44900					0.02638694334268621
NVEVIELAL	9	Unmodified	_NVEVIELAL_					0	0	0		ENST00000517561.1_1_5:77417682-77436990:-|nuORF	ENST00000517561.1_1_5:77417682-77436990:-|nuORF	ENST00000517561.1_1_5:77417682-77436990:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.3050231933594	2	500.289682	998.564812	-0.95838	-0.00047947	3.0248	0.0015133	2.0665	0.0010338	500.29071886405933	94.482	0.20126	92.586	92.46	92.662	-1.8956					5	3	2	0	0	0	0.027462	1	6108	6108		44.117	18.667	1	24457			41496	13058	34253	34277	44901	44901					0.06547207383164277
NVEWAKPSTN	10	Unmodified	_NVEWAKPSTN_					0	0	0		ENST00000590158.1_1_19:10225792-10226817:-|nuORF;ENSG00000130811|ENST00000253108|EIF3G	ENST00000590158.1_1_19:10225792-10226817:-|nuORF	ENST00000590158.1_1_19:10225792-10226817:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	573.28515625	2	573.28292	1144.55129	-0.57284	-0.0003284	0.049792	2.8545E-05	-0.52305	-0.00029986	573.2828548059774	59.938	1.1752	59.938	59.726	60.901	0					50	28	4	0	0	0	0.022626	1	5197	5197		144.77	20.688	1	4650300			41497	4018	34254	34278	44902	44902					-0.015206503960371265
NVEWAKPSTN	10	Unmodified	_NVEWAKPSTN_					0	0	0		ENST00000590158.1_1_19:10225792-10226817:-|nuORF;ENSG00000130811|ENST00000253108|EIF3G	ENST00000590158.1_1_19:10225792-10226817:-|nuORF	ENST00000590158.1_1_19:10225792-10226817:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	573.28292	1144.55129	-2.7155	-0.0015567	2.5582	0.0014666	-0.15723	-9.0135E-05	573.2841555850498	63.067	0.83852	60.323	60.004	60.842	-2.7444	0.19243	0.0025365	NaN	144.77	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15883			41498	4018	34254	34278							-0.015206503960371265
NVFEKLTF	8	Unmodified	_NVFEKLTF_					0	0	0			REV__tr|A0A553SI69|A0A553SI69_NIACILowmolecularweightproteinargininephosphataseOS=NialliacirculansOX=1397GN=CEQ21_14320PE=3SV=1	REV__tr|A0A553SI69|A0A553SI69_NIACILowmolecularweightproteinargininephosphataseOS=NialliacirculansOX=1397GN=CEQ21_14320PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	499.27081298828125	2	499.271293	996.528032	1.4485	0.00072321	-1.6267	-0.00081217	-0.17819	-8.8963E-05	499.2703458737483	88.651	1.6275	87.284	86.69	88.318	-1.3676					91	32	4	0	0	0	0.53531	2	7780	7780;7798		73.975	0	1	1151300	+		41499	29866	34255	34279	44903;44904	44903					0.02962955557291025
NVFKSTSLSFK	11	Unmodified	_NVFKSTSLSFK_					0	0	0			REV__tr|A0A7D6ZX49|A0A7D6ZX49_9CLOT16SrRNA(cytosine(967)-C(5))-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=rsmBPE=3SV=1	REV__tr|A0A7D6ZX49|A0A7D6ZX49_9CLOT16SrRNA(cytosine(967)-C(5))-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=rsmBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	629.8505249023438	2	629.34552	1256.67649	-0.35888	-0.00022586	0.43242	0.00027214	0.073544	4.6284E-05	629.3458658602128	91.288	1.2597	89.264	88.829	90.089	-2.0241					58	24	5	0	0	0	0.025701	1	5804	5804		22.58	1.7425	1	394370	+		41500	32315	34256	34280	44905	44905					0.05841641740335035
NVFLQATDK	9	Unmodified	_NVFLQATDK_					0	0	0		ENSG00000173369|ENST00000509305|C1QB;nc|ENSG00000173369|P02746|C1QB	ENSG00000173369|ENST00000509305|C1QB	ENSG00000173369|ENST00000509305|C1QB	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.7551879882812	2	518.277106	1034.53966	2.4911	0.0012911	0.68916	0.00035718	3.1803	0.0016483	518.277368472474	99.082	0.55984	99.082	98.801	99.361	0					23	13	2	0	0	0	0.02744	1	10907	10907		36.447	0	1	1606000			41501	7370	34257	34281	44906	44906					0.02377152580584152
NVFNKWKS	8	Unmodified	_NVFNKWKS_					0	0	0		tr|A0A553SQQ4|A0A553SQQ4_NIACIAbortivephageresistanceproteinOS=NialliacirculansOX=1397GN=CEQ21_07115PE=4SV=1	tr|A0A553SQQ4|A0A553SQQ4_NIACIAbortivephageresistanceproteinOS=NialliacirculansOX=1397GN=CEQ21_07115PE=4SV=1	tr|A0A553SQQ4|A0A553SQQ4_NIACIAbortivephageresistanceproteinOS=NialliacirculansOX=1397GN=CEQ21_07115PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	511.7746887207031	2	511.774534	1021.53451	1.5636	0.00080024	-2.0543	-0.0010513	-0.49066	-0.00025111	511.77307551991845	148.92	0.6356	148.92	148.52	149.16	0					22	12	3	0	0	0	0.73938	1	17422	17422		31.955	0	1	74131			41502	34185	34258	34282	44907	44907					0.02460893508657591
NVGGFKQSVD	10	Unmodified	_NVGGFKQSVD_					0	0	0		ENSG00000170745|ENST00000304101|KCNS3	ENSG00000170745|ENST00000304101|KCNS3	ENSG00000170745|ENST00000304101|KCNS3	MULTI-MSMS	OvCa99_classI_Rep5	1	525.76904296875	2	525.764363	1049.51417	-0.42474	-0.00022331	-1.3246	-0.00069643	-1.7493	-0.00091975	525.763484267364	60.456	1.0026	60.456	60.153	61.156	0					44	23	3	0	0	0	0.67931	1	5274	5274		32.812	3.6629	1	2458000			41503	7130	34259	34283	44908	44908					-0.008603219417864238
NVGINYVVVK	10	Unmodified	_NVGINYVVVK_					0	0	0		tr|A0A553SJF7|A0A553SJF7_NIACISporulationproteinYunBOS=NialliacirculansOX=1397GN=yunBPE=4SV=1	tr|A0A553SJF7|A0A553SJF7_NIACISporulationproteinYunBOS=NialliacirculansOX=1397GN=yunBPE=4SV=1	tr|A0A553SJF7|A0A553SJF7_NIACISporulationproteinYunBOS=NialliacirculansOX=1397GN=yunBPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	552.8233642578125	2	552.824224	1103.63389	1.4579	0.00080598	-1.5531	-0.00085861	-0.095196	-5.2626E-05	552.8231418896985	126.07	1.3319	125.83	125.55	126.89	-0.2359					72	26	4	0	0	0	0.49558	1	12292	12292		54.776	16.023	1	197830			41504	33497	34260	34284	44909	44909					0.08622291402775772
NVGINYVVVK	10	Unmodified	_NVGINYVVVK_					0	0	0		tr|A0A553SJF7|A0A553SJF7_NIACISporulationproteinYunBOS=NialliacirculansOX=1397GN=yunBPE=4SV=1	tr|A0A553SJF7|A0A553SJF7_NIACISporulationproteinYunBOS=NialliacirculansOX=1397GN=yunBPE=4SV=1	tr|A0A553SJF7|A0A553SJF7_NIACISporulationproteinYunBOS=NialliacirculansOX=1397GN=yunBPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.8235473632812	2	552.824224	1103.63389	-0.65284	-0.00036091	0.20079	0.000111	-0.45206	-0.00024991	552.8241738200417	127.6	1.5781	126.16	125.89	127.47	-1.4357					69	30	3	0	0	0	0.41408	1	12174	12174		66.429	9.7082	1	306030			41505	33497	34260	34284	44910	44910					0.08622291402775772
NVGLHQTL	8	Unmodified	_NVGLHQTL_					0	0	0		ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000167460|P67936-2|TPM4;ENST00000520239.1_1_8:70042334-70042577:+|nuORF;ENST00000368528.3_1_3:27674554-27675208:+|nuORF	ENSG00000167460|ENST00000643579|TPM4;ENST00000368528.3_1_3:27674554-27675208:+|nuORF	ENSG00000167460|ENST00000643579|TPM4	MULTI-MSMS	OvCa99_classI_Rep5	1	441.247314453125	2	441.245609	880.476666	1.0247	0.00045214	-0.80075	-0.00035333	0.22393	9.8809E-05	441.2451068428843	62.016	0.71668	62.016	61.784	62.501	0					37	16	3	0	0	0	0.53252	1	5498	5498		74.255	13.283	1	2411700			41506	6790;10875	34261	34285	44911	44911					0.03164631583240407
NVGSPLLIHL	10	Unmodified	_NVGSPLLIHL_					0	0	0		nc|ENSG00000083828|Q9NXT0-2|ZNF586;ZNF586|p.I75Tfs*178|1|0.21|ENSG00000083828|chr19:57778808-57778811|ATAT/-|frameshift_variant	nc|ENSG00000083828|Q9NXT0-2|ZNF586	nc|ENSG00000083828|Q9NXT0-2|ZNF586	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8163452148438	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.66721	1	14045	14045		34.173	5.023	1	166960			41507	14905	34262	34286	44912	44912					0.09498308748356976
NVGVNKNI	8	Unmodified	_NVGVNKNI_					0	0	0		ENSG00000106605|ENST00000265523|BLVRA	ENSG00000106605|ENST00000265523|BLVRA	ENSG00000106605|ENST00000265523|BLVRA	MULTI-SECPEP	OvCa99_classI_Rep5	1	430.2409362792969	2	429.245609	856.476666	0.24702	0.00010603	-1.6527	-0.0007094	-1.4056	-0.00060337	429.24464247296305	32.804	0.24128	32.804	32.651	32.892	0					7	4	2	0	0	0	0.028476	1	1460	1460		23.042	10.836	1	17407			41508	2564	34263	34287	44913	44913					0.042686315832384025
NVHCRTAGP	9	Unmodified	_NVHCRTAGP_					0	0	0			REV__ENST00000489318.1_1_9:97523006-97535511:+|nuORF	REV__ENST00000489318.1_1_9:97523006-97535511:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.93609619140625	2	477.732343	953.450133	-0.5586	-0.00026686	-3.7261	-0.0017801	-4.2847	-0.0020469	477.73020083540837	71.17	0.7839	67.714	67.533	68.317	-3.4563					27	15	3	0	0	0	0.027462	1	5449	5449		17.365	4.4058	1	75334	+		41509	24100	34264	34288	44914	44914					-0.028453805797425957
NVHKLAKL	8	Unmodified	_NVHKLAKL_					0	0	0			REV__nc|ENSG00000176601|Q56UN5-7|MAP3K19	REV__nc|ENSG00000176601|Q56UN5-7|MAP3K19	MULTI-SECPEP	OvCa99_classI_Rep5	1	461.2568664550781	2	461.795269	921.575986	-1.0465	-0.00048329	0.47815	0.00022081	-0.56839	-0.00026248	461.7953266738847	70.164	0.23952	70.164	70.046	70.286	0					7	5	2	0	0	0	0.028476	1	6697	6697		11.511	0	1	113700	+		41510	21957	34265	34289	44915	44915					0.11206074268000066
NVIEKQLV	8	Unmodified	_NVIEKQLV_					0	0	0			REV__tr|A0A7D6VNZ9|A0A7D6VNZ9_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20455PE=4SV=1	REV__tr|A0A7D6VNZ9|A0A7D6VNZ9_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20455PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.2991027832031	2	471.784567	941.554582	-0.32015	-0.00015104	0.64476	0.00030419	0.3246	0.00015314	471.7845282579506	43.482	0.82505	40.475	40.115	40.94	-3.0074					27	15	2	0	0	0	0.028476	1	2111	2111		51.335	10.557	1	45950	+		41511	31218	34266	34290	44916	44916					0.0814664444861819
NVIGAKPVFL	10	Unmodified	_NVIGAKPVFL_					0	0	0		tr|A0A7D6VT53|A0A7D6VT53_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_15640PE=4SV=1	tr|A0A7D6VT53|A0A7D6VT53_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_15640PE=4SV=1	tr|A0A7D6VT53|A0A7D6VT53_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_15640PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	529.3232421875	2	529.32386	1056.63317	-1.1676	-0.00061804	0.78416	0.00041508	-0.38345	-0.00020297	529.3242535974534	136.04	1.0338	134.93	134.65	135.69	-1.1076					52	20	3	0	0	0	0.72319	1	11032	11032		27.882	2.3082	1	71825			41512	35087	34267	34291	44917	44917					0.10711496753719985
NVIIGKLV	8	Unmodified	_NVIIGKLV_					0	0	0		tr|A0A553SHC0|A0A553SHC0_NIACIDNA-directedRNApolymerasesubunitbeta'OS=NialliacirculansOX=1397GN=rpoCPE=3SV=1	tr|A0A553SHC0|A0A553SHC0_NIACIDNA-directedRNApolymerasesubunitbeta'OS=NialliacirculansOX=1397GN=rpoCPE=3SV=1	tr|A0A553SHC0|A0A553SHC0_NIACIDNA-directedRNApolymerasesubunitbeta'OS=NialliacirculansOX=1397GN=rpoCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	428.2868347167969	2	428.286746	854.558939	-0.64189	-0.00027491	0.81398	0.00034862	0.17209	7.3704E-05	428.28696961623916	106.76	1.2436	104.89	104.54	105.79	-1.8785					62	23	4	0	0	0	0.68714	1	9750	9750		45.952	19.156	1	512020			41513	33255	34268	34292	44918	44918					0.12584153662191966
NVIKISNVE	9	Unmodified	_NVIKISNVE_					0	0	0			REV__tr|A0A553SRV1|A0A553SRV1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01850PE=4SV=1	REV__tr|A0A553SRV1|A0A553SRV1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01850PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.76300048828125	2	508.292756	1014.57096	-0.10411	-5.2921E-05	-0.20705	-0.00010524	-0.31116	-0.00015816	508.29260814906866	122.31	1.266	120.94	120.34	121.6	-1.3666					44	24	3	0	0	0	0.027462	1	11618	11618		35.152	0	1	74472	+		41514	30767	34269	34293	44919	44919					0.06425725614724342
NVILQEILN	9	Unmodified	_NVILQEILN_					0	0	0		tr|A0A553SKD7|A0A553SKD7_NIACIATP-dependentRecD2DNAhelicaseOS=NialliacirculansOX=1397GN=recD2PE=3SV=1	tr|A0A553SKD7|A0A553SKD7_NIACIATP-dependentRecD2DNAhelicaseOS=NialliacirculansOX=1397GN=recD2PE=3SV=1	tr|A0A553SKD7|A0A553SKD7_NIACIATP-dependentRecD2DNAhelicaseOS=NialliacirculansOX=1397GN=recD2PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	527.354248046875	2	528.308406	1054.60226	-0.55695	-0.00029424	-0.51018	-0.00026953	-1.0671	-0.00056377	528.3080018866118	83.153	1.2654	81.554	81.27	82.535	-1.5989					52	25	3	0	0	0	0.027461	1	7204	7204		32.812	0	1	284880			41515	33607	34270	34294	44920	44920					0.07714298648807016
NVITFTPSTI	10	Unmodified	_NVITFTPSTI_					0	0	0			REV__tr|A0A7D6ZWI5|A0A7D6ZWI5_9CLOTtRNAthreonylcarbamoyladenosinebiosynthesisproteinTsaEOS=ClostridiumintestinaleOX=36845GN=tsaEPE=3SV=1	REV__tr|A0A7D6ZWI5|A0A7D6ZWI5_9CLOTtRNAthreonylcarbamoyladenosinebiosynthesisproteinTsaEOS=ClostridiumintestinaleOX=36845GN=tsaEPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.82958984375	2	546.800414	1091.58628	-0.45217	-0.00024725	-3.2297	-0.001766	-3.6818	-0.0020132	546.798405105439	98.681	0.51375	96.303	96.072	96.586	-2.3786					14	9	2	0	0	0	0.026802	1	8753	8753		26.693	0	1	23962	+		41516	32290	34271	34295	44921	44921					0.04414592411899321
NVIVLVKGEY	10	Unmodified	_NVIVLVKGEY_					0	0	0			REV__tr|A0A553SLD1|A0A553SLD1_NIACIGlutathioneperoxidaseOS=NialliacirculansOX=1397GN=CEQ21_20425PE=3SV=1	REV__tr|A0A553SLD1|A0A553SLD1_NIACIGlutathioneperoxidaseOS=NialliacirculansOX=1397GN=CEQ21_20425PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3292846679688	2	567.331882	1132.64921	-2.3399	-0.0013275	-1.3687	-0.0007765	-3.7086	-0.002104	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.65434	1	14614	14614		35.618	1.4457	1	241060	+		41517	30210	34272	34296	44922	44922					0.08819158199980848
NVKAKSNVDL	10	Unmodified	_NVKAKSNVDL_					0	0	0		nc|ENSG00000130037|P22460-2|KCNA5;ENSG00000130037|ENST00000252321|KCNA5	nc|ENSG00000130037|P22460-2|KCNA5	nc|ENSG00000130037|P22460-2|KCNA5	MULTI-MSMS	OvCa99_classI_Rep5	1	544.311767578125	2	544.308938	1086.60332	2.0329	0.0011065	2.4768	0.0013481	4.5096	0.0024546	544.3096665994037	87.083	1.6189	87.083	86.511	88.13	0					60	38	3	0	0	0	0.64697	1	9187	9187		36.447	3.6343	1	2751600			41518	3954	34273	34297	44923	44923					0.06348513017701407
NVKKLRRR	8	Unmodified	_NVKKLRRR_					0	0	0			REV__ENSG00000111049|ENST00000228644|MYF5	REV__ENSG00000111049|ENST00000228644|MYF5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.2929077148438	2	535.356891	1068.69923	-1.1736	-0.00062829	2.9322	0.0015698	1.7586	0.00094149	535.3583970887709	77.449	0.72536	74.632	74.44	75.165	-2.8165					25	14	3	0	0	0	0.028476	1	6176	6176		31.955	0	1	41734	+		41519	18015	34274	34298	44924	44924					0.16762750439102092
NVKKSRRLII	10	Unmodified	_NVKKSRRLII_					0	0	0		ENSG00000115594|ENST00000410023|IL1R1	ENSG00000115594|ENST00000410023|IL1R1	ENSG00000115594|ENST00000410023|IL1R1	MULTI-MSMS	OvCa9_classI_Rep2	2	409.6082763671875	3	409.606701	1225.79827	0.6889	0.00028218	2.4344	0.00099713	3.1233	0.0012793	409.60766459120623	104.29	12.102	103.72	103.28	115.38	-0.57639					699	244	5	0	0	0	0.45822	24	9639	9624;9639;9664;9670;9676;9682;9694;9707;9719;9731;9749;9755;9773;9792;9797;9815;9839;9871;9899;9911;9916;9928;9946;9997		60.118	9.7661	1	1628000			41520	3110	34275	34299	44925;44926;44927;44928;44929;44930;44931;44932;44933;44934;44935;44936;44937;44938;44939;44940;44941;44942;44943;44944;44945;44946;44947;44948	44926					0.19440728613380998
NVKKSRRLII	10	Unmodified	_NVKKSRRLII_					0	0	0		ENSG00000115594|ENST00000410023|IL1R1	ENSG00000115594|ENST00000410023|IL1R1	ENSG00000115594|ENST00000410023|IL1R1	MULTI-MSMS	OvCa9_classI_Rep3	3	409.6078186035156	3	409.606701	1225.79827	1.1396	0.00046679	1.9436	0.00079611	3.0832	0.0012629	409.6074659919173	107.95	5.8573	106.76	106.27	112.13	-1.1978					409	114	4	0	0	0	0.48398	9	7696	7667;7679;7696;7745;7782;7837;7844;7874;8028		56.434	4.5138	1	1037400			41521	3110	34275	34299	44949;44950;44951;44952;44953;44954;44955;44956;44957	44951					0.19440728613380998
NVKKSRRLII	10	Unmodified	_NVKKSRRLII_					0	0	0		ENSG00000115594|ENST00000410023|IL1R1	ENSG00000115594|ENST00000410023|IL1R1	ENSG00000115594|ENST00000410023|IL1R1	MULTI-MSMS	OvCa9_classI_Rep4_	4	409.6090393066406	3	409.606701	1225.79827	0.55097	0.00022568	2.443	0.0010007	2.994	0.0012264	409.60762934156605	108.64	8.1164	106.92	106.42	114.53	-1.7256					461	158	5	0	0	0	0.49595	3	9956	9944;9956;9981		54.722	12.384	1	863570			41522	3110	34275	34299	44958;44959;44960	44959					0.19440728613380998
NVKLNVKLN	9	Unmodified	_NVKLNVKLN_					0	0	0		tr|A0A553SF50|A0A553SF50_NIACItRNApseudouridinesynthaseAOS=NialliacirculansOX=1397GN=truAPE=3SV=1	tr|A0A553SF50|A0A553SF50_NIACItRNApseudouridinesynthaseAOS=NialliacirculansOX=1397GN=truAPE=3SV=1	tr|A0A553SF50|A0A553SF50_NIACItRNApseudouridinesynthaseAOS=NialliacirculansOX=1397GN=truAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.30712890625	2	521.324391	1040.63423	-0.41568	-0.00021671	1.862	0.00097069	1.4463	0.00075398	521.8269645139859	90.761	0.30617	88.186	88.007	88.313	-2.575					8	5	2	0	0	0	0.027462	1	7824	7824		27.882	1.1893	1	18378			41523	32991	34276	34300	44961	44961					0.11553711122610366
NVKRAEHPN	9	Unmodified	_NVKRAEHPN_					0	0	0			REV__ENSG00000179913|ENST00000318683|B3GNT3	REV__ENSG00000179913|ENST00000318683|B3GNT3	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.3110961914062	2	532.783422	1063.55229	1.2155	0.00064762	-2.6711	-0.0014231	-1.4555	-0.00077547	533.2837202518134	145.78	0.34952	145.78	145.58	145.93	0					10	6	2	0	0	0	0.027462	1	17045	17045		30.318	0	1	48234	+		41524	22145	34277	34301	44962	44962					0.023056087635040967
NVKRAWSHI	9	Unmodified	_NVKRAWSHI_					0	0	0			REV__DDX60|p.L860Qfs*23|1|0.12|ENSG00000137628|chr4:168272134-168272135|-/AACTT|frameshift_variant	REV__DDX60|p.L860Qfs*23|1|0.12|ENSG00000137628|chr4:168272134-168272135|-/AACTT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.8002319335938	2	555.811982	1109.60941	0.18286	0.00010164	0.76732	0.00042649	0.95019	0.00052813	556.3138561347334	56.845	0.42557	56.845	56.623	57.048	0					22	9	3	0	0	0	0.027455	1	4721	4721		60.972	0	1	235020	+		41525	16283	34278	34302	44963	44963					0.0589907603989559
NVKVVKRDT	9	Unmodified	_NVKVVKRDT_					0	0	0			REV__tr|A0A7D6ZMP3|A0A7D6ZMP3_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12815PE=3SV=1	REV__tr|A0A7D6ZMP3|A0A7D6ZMP3_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12815PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.2892456054688	2	529.819473	1057.62439	2.1907	0.0011607	0.32729	0.00017341	2.518	0.0013341	529.8201954350488	80.636	0.42772	80.636	80.443	80.871	0					14	9	2	0	0	0	0.027462	1	8303	8303		35.618	5.3006	1	323170	+		41526	32110	34279	34303	44964	44964					0.09788523117231307
NVKYRKNI	8	Unmodified	_NVKYRKNI_					0	0	0		ENSG00000155085|ENST00000424296|AK9	ENSG00000155085|ENST00000424296|AK9	ENSG00000155085|ENST00000424296|AK9	MULTI-MSMS	OvCa99_classI_Rep5	1	517.8084716796875	2	517.808908	1033.60326	-0.20734	-0.00010736	0.016906	8.7543E-06	-0.19043	-9.8607E-05	517.8087532001431	64.767	0.52832	64.767	64.544	65.072	0					37	12	4	0	0	0	0.7043	1	5904	5904		42.474	0.078325	1	2772400			41527	5767	34280	34304	44965	44965					0.08780557808381673
NVLERPRG	8	Unmodified	_NVLERPRG_					0	0	0		nc|ENSG00000185760|Q9NR82-3|KCNQ5;nc|ENSG00000185760|Q9NR82-4|KCNQ5;nc|ENSG00000185760|Q9NR82-5|KCNQ5;nc|ENSG00000185760|Q9NR82-2|KCNQ5;ENSG00000185760|ENST00000370398|KCNQ5;nc|ENSG00000185760|Q9NR82-7|KCNQ5;nc|ENSG00000185760|Q9NR82-6|KCNQ5;KCNQ2|p.A246Lfs*16|1|0.19|ENSG00000075043|chr20:63442485-63442486|GC/-|frameshift_variant;KCNQ4|p.Y353Pfs*12|1|0.05|ENSG00000117013|chr1:40822328-40822344|GTACTCCACCGATATGA/-|frameshift_variant;nc|ENSG00000117013|P56696-2|KCNQ4;ENSG00000117013|ENST00000347132|KCNQ4;nc|ENSG00000075043|O43526-6|KCNQ2;KCNQ2|p.S522Hfs*9|1|0.15|ENSG00000075043|chr20:63414155-63414156|-/GGGTG|frameshift_variant;nc|ENSG00000075043|O43526-4|KCNQ2;nc|ENSG00000075043|O43526-5|KCNQ2;nc|ENSG00000075043|O43526-3|KCNQ2;nc|ENSG00000075043|O43526-2|KCNQ2;ENSG00000075043|ENST00000359125|KCNQ2	nc|ENSG00000185760|Q9NR82-3|KCNQ5;nc|ENSG00000075043|O43526-6|KCNQ2	nc|ENSG00000185760|Q9NR82-3|KCNQ5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.7881164550781	2	470.769783	939.525013	-0.26526	-0.00012488	0.68726	0.00032354	0.422	0.00019866	470.7700664169672	41.288	1.2973	38.307	37.918	39.216	-2.9804					61	24	5	0	0	0	0.028476	1	1838	1838		32.812	11.11	1	252780			41528	15217;1521	34281	34305	44966	44966					0.05283125223149909
NVLFKEKI	8	Unmodified	_NVLFKEKI_					0	0	0		tr|A0A7D6ZJG8|A0A7D6ZJG8_9CLOTArsAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08570PE=3SV=1	tr|A0A7D6ZJG8|A0A7D6ZJG8_9CLOTArsAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08570PE=3SV=1	tr|A0A7D6ZJG8|A0A7D6ZJG8_9CLOTArsAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08570PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.78594970703125	2	495.80276	989.590967	2.0341	0.0010085	0.40469	0.00020064	2.4388	0.0012092	495.80264065138147	96.665	0.21095	96.665	96.584	96.795	0					5	4	2	0	0	0	0.028476	1	10614	10614		44.117	10.624	1	43841			41529	35641	34282	34306	44967	44967					0.09575521345323068
NVLFLVYFML	10	Unmodified	_NVLFLVYFML_					0	0	0			REV__tr|A0A553SHF5|A0A553SHF5_NIACISporecortexbiosynthesisproteinYabQOS=NialliacirculansOX=1397GN=yabQPE=4SV=1	REV__tr|A0A553SHF5|A0A553SHF5_NIACISporecortexbiosynthesisproteinYabQOS=NialliacirculansOX=1397GN=yabQPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	629.8482666015625	2	629.848853	1257.68315	0.41848	0.00026358	-0.078418	-4.9391E-05	0.34006	0.00021419	629.8484322050896	91.238	2.6459	90.003	89.341	91.986	-1.2355					108	50	4	0	0	0	0.45822	1	8099	8099		38.806	4.8845	1	840130	+		41530	29797	34283	34307	44968	44968					0.06461863367371734
NVLFLVYFML	10	Unmodified	_NVLFLVYFML_					0	0	0			REV__tr|A0A553SHF5|A0A553SHF5_NIACISporecortexbiosynthesisproteinYabQOS=NialliacirculansOX=1397GN=yabQPE=4SV=1	REV__tr|A0A553SHF5|A0A553SHF5_NIACISporecortexbiosynthesisproteinYabQOS=NialliacirculansOX=1397GN=yabQPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	629.8500366210938	2	629.848853	1257.68315	-0.76347	-0.00048087	0.88061	0.00055465	0.11714	7.3783E-05	629.8490645395771	92.583	1.5683	90.068	89.595	91.163	-2.5147					91	31	4	0	0	0	0.39172	1	8047	8047		57.811	17.753	1	1025100	+		41531	29797	34283	34307	44969	44969					0.06461863367371734
NVLFYVKRR	9	Unmodified	_NVLFYVKRR_					0	0	0		ENST00000399613.1_1_13:28868371-28868449:+|nuORF	ENST00000399613.1_1_13:28868371-28868449:+|nuORF	ENST00000399613.1_1_13:28868371-28868449:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	597.85546875	2	597.858932	1193.70331	-3.1766	-0.0018991	-1.0809	-0.0006462	-4.2574	-0.0025453	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.67509	1	15056	15056		23.042	2.0956	1	436470			41532	11395	34284	34308	44970	44970					0.11420795142180395
NVLFYVKRR	9	Unmodified	_NVLFYVKRR_					0	0	0		ENST00000399613.1_1_13:28868371-28868449:+|nuORF	ENST00000399613.1_1_13:28868371-28868449:+|nuORF	ENST00000399613.1_1_13:28868371-28868449:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8558349609375	2	597.858932	1193.70331	-2.7036	-0.0016164	-1.6559	-0.00099001	-4.3595	-0.0026064	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.61208	1	12569	12569		30.504	1.3541	1	591030			41533	11395	34284	34308	44971	44971					0.11420795142180395
NVLGIAVNAV	10	Unmodified	_NVLGIAVNAV_					0	0	0			REV__ENST00000309862.10_1_17:37829058-37830070:-|nuORF	REV__ENST00000309862.10_1_17:37829058-37830070:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	485.2883605957031	2	485.290017	968.565481	0.67971	0.00032986	-3.7324	-0.0018113	-3.0527	-0.0014814	485.2880610480828	30.452	1.281	27.743	27.557	28.838	-2.7097					46	25	3	0	0	0	0.78463	1	838	838		20.947	0	1	148120	+		41534	20695	34285	34309	44972	44972					0.07994046822898326
NVLGLKILF	9	Unmodified	_NVLGLKILF_					0	0	0			REV__ENSG00000151461|ENST00000357604|UPF2	REV__ENSG00000151461|ENST00000357604|UPF2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.28448486328125	2	508.828778	1015.643	-0.5857	-0.00029802	-3.7563	-0.0019113	-4.342	-0.0022093	508.82675482277295	82.978	0.29275	80.295	80.173	80.466	-2.6829					9	5	2	0	0	0	0.027462	1	6898	6898		24.203	0	1	30184	+		41535	20234	34286	34310	44973	44973					0.1358068475909704
NVLIIQIYSA	10	Unmodified	_NVLIIQIYSA_					0	0	0			REV__ENST00000486143.1_1_3:36422177-36500751:+|nuORF	REV__ENST00000486143.1_1_3:36422177-36500751:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	567.32958984375	2	567.331882	1132.64921	-1.6483	-0.00093515	-2.1618	-0.0012264	-3.8101	-0.0021616	567.3305014697371	141.66	3.9446	141.43	139.35	143.3	-0.22697					200	79	3	0	0	0	0.73378	1	14153	14153		26.693	0	1	83872	+		41536	26579	34287	34311	44974	44974					0.0881915819995811
NVLIIQIYSA	10	Unmodified	_NVLIIQIYSA_					0	0	0			REV__ENST00000486143.1_1_3:36422177-36500751:+|nuORF	REV__ENST00000486143.1_1_3:36422177-36500751:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3298950195312	2	567.331882	1132.64921	-3.474	-0.0019709	-0.21845	-0.00012393	-3.6925	-0.0020949	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.66721	1	12049	12049		34.173	1.3601	1	458690	+		41537	26579	34287	34311	44975	44975					0.0881915819995811
NVLKMYSGG	9	Unmodified	_NVLKMYSGG_					0	0	0			REV__tr|A0A7D6ZJJ5|A0A7D6ZJJ5_9CLOTVitaminB12-dependentribonucleotidereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08775PE=3SV=1	REV__tr|A0A7D6ZJJ5|A0A7D6ZJJ5_9CLOTVitaminB12-dependentribonucleotidereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08775PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.7678527832031	2	484.747127	967.479702	0.14003	6.788E-05	0.089036	4.316E-05	0.22907	0.00011104	484.7470653196127	73.765	0.1946	73.765	73.597	73.792	0					6	4	2	0	0	0	0.027462	1	7235	7235		15.642	0	1	142880	+		41538	32085	34288	34312	44976	44976					-0.005338613542448911
NVLKRALNK	9	Unmodified	_NVLKRALNK_					0	0	0		ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.30029296875	2	528.337833	1054.66111	-2.3482	-0.0012406	2.5885	0.0013676	0.24033	0.00012697	528.3390920575665	49.019	0.67661	45.878	45.675	46.352	-3.1416					19	12	2	0	0	0	0.027462	1	2727	2727		30.504	18.297	1	20679			41539	1294	34289	34313	44977	44977					0.13596819733811571
NVLKRALNK	9	Unmodified	_NVLKRALNK_					0	0	0		ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	ENSG00000064115|ENST00000343028|TM7SF3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	528.337833	1054.66111	-1.2275	-0.00064852	0.78549	0.00041501	-0.44198	-0.00023351	528.3380736805581	48.506	0.94602	45.746	45.478	46.424	-2.7603	-0.065837	-0.00060237	NaN	23.042	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36071			41540	1294	34289	34313							0.13596819733811571
NVLLDFTGG	9	Unmodified	_NVLLDFTGG_					0	0	0		ENSG00000040531|ENST00000046640|CTNS;nc|ENSG00000040531|O60931-2|CTNS	ENSG00000040531|ENST00000046640|CTNS	ENSG00000040531|ENST00000046640|CTNS	MULTI-SECPEP	OvCa99_classI_Rep5	1	468.79937744140625	2	468.245275	934.475997	1.5784	0.00073908	1.4652	0.00068606	3.0436	0.0014251	468.2459294746437	119.74	0.33121	119.74	119.59	119.92	0					10	7	2	0	0	0	0.027418	1	13744	13744		68.787	15.85	1	94383			41541	1113	34290	34314	44978	44978					0.006137921435311
NVLLRKSGG	9	Unmodified	_NVLLRKSGG_					0	0	0		ENST00000525729.5_2_11:108264081-108276170:-|nuORF	ENST00000525729.5_2_11:108264081-108276170:-|nuORF	ENST00000525729.5_2_11:108264081-108276170:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	472.2877197265625	2	472.287808	942.561064	-3.3723	-0.0015927	3.3552	0.0015846	-0.017057	-8.0558E-06	472.2892568382278	150.85	1.4757	150.62	150.22	151.7	-0.22697					85	29	4	0	0	0	0.59259	1	15299	15299		32.812	6.0163	1	396600			41542	13199	34291	34315	44979	44979					0.08748582400005489
NVLMNSPKV	9	Unmodified	_NVLMNSPKV_					0	0	0			REV__nc|ENSG00000137764|Q13163-4|MAP2K5	REV__nc|ENSG00000137764|Q13163-4|MAP2K5	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.7992858886719	2	501.276052	1000.53755	-0.68966	-0.00034571	1.7105	0.00085744	1.0209	0.00051174	501.27770612124493	43.529	0.38062	43.529	43.227	43.608	0					11	8	2	0	0	0	0.027232	1	2839	2839		56.721	0	1	82559	+		41543	19473	34292	34316	44980	44980					0.03730400571168957
NVLPPLIVQN	10	Unmodified	_NVLPPLIVQN_					0	0	0			REV__ENST00000222584.7_1_7:21469183-21469285:+|nuORF	REV__ENST00000222584.7_1_7:21469183-21469285:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8291625976562	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.79213	1	14426	14426		19.997	0.89325	1	245610	+		41544	23751	34293	34317	44981	44981					0.10094577919812764
NVLPYRTY	8	Unmodified	_NVLPYRTY_					0	0	0			REV__tr|A0A553SGZ5|A0A553SGZ5_NIACIHlyC/CorCfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_11855PE=3SV=1	REV__tr|A0A553SGZ5|A0A553SGZ5_NIACIHlyC/CorCfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_11855PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.2778930664062	2	513.274367	1024.53418	-0.6594	-0.00033845	3.3088	0.0016983	2.6494	0.0013599	513.275866810469	93.774	1.4584	91.267	90.913	92.372	-2.5072					72	30	3	0	0	0	0.57734	1	8169	8169		68.787	20.871	1	563090	+		41545	29755	34294	34318	44982	44982					0.022894737888236705
NVLRAYDE	8	Unmodified	_NVLRAYDE_					0	0	0		tr|A0A7D6VZH7|A0A7D6VZH7_9CLOTCotSfamilysporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19680PE=4SV=1	tr|A0A7D6VZH7|A0A7D6VZH7_9CLOTCotSfamilysporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19680PE=4SV=1	tr|A0A7D6VZH7|A0A7D6VZH7_9CLOTCotSfamilysporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19680PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.7631530761719	2	490.245806	978.47706	-0.30591	-0.00014997	-1.0711	-0.00052508	-1.377	-0.00067505	490.24534802799144	58.634	0.73927	58.634	58.153	58.892	0					29	17	2	0	0	0	0.028476	1	5026	5026		25.45	0	1	2247000			41546	35359	34295	34319	44983	44983					-0.013039934875791914
NVLRKGQEI	9	Unmodified	_NVLRKGQEI_					0	0	0			REV__tr|A0A553SS46|A0A553SS46_NIACIZn-dependenthydrolaseOS=NialliacirculansOX=1397GN=CEQ21_02325PE=3SV=1	REV__tr|A0A553SS46|A0A553SS46_NIACIZn-dependenthydrolaseOS=NialliacirculansOX=1397GN=CEQ21_02325PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	528.8132934570312	2	528.811648	1055.60874	1.6358	0.00086502	3.9314	0.002079	5.5672	0.002944	528.8138016565096	127.83	3.2574	127.83	127.27	130.53	0					192	69	5	0	0	0	0.40818	1	14767	14767		51.193	5.2204	1	11008000	+		41547	30803	34296	34320	44984	44984					0.08316236600194316
NVLTVLVAVS	10	Unmodified	_NVLTVLVAVS_					0	0	0		ENSG00000102195|ENST00000218316|GPR50	ENSG00000102195|ENST00000218316|GPR50	ENSG00000102195|ENST00000218316|GPR50	MULTI-MSMS	OvCa9_classI_Rep2	2	507.8124694824219	2	507.813325	1013.6121	-3.6205	-0.0018386	3.3476	0.0017	-0.27295	-0.00013861	507.8149170014654	151.23	0.95454	151.01	150.75	151.7	-0.22697					37	18	3	0	0	0	0.73378	1	15361	15361		26.693	0	1	62074			41548	2228	34297	34321	44985	44985					0.1058348665419544
NVLVSLTF	8	Unmodified	_NVLVSLTF_					0	0	0		ENSG00000151229|ENST00000280871|SLC2A13	ENSG00000151229|ENST00000280871|SLC2A13	ENSG00000151229|ENST00000280871|SLC2A13	MULTI-SECPEP	OvCa99_classI_Rep5	1	446.2389831542969	2	446.760561	891.506569	0.31062	0.00013877	-1.0914	-0.00048758	-0.78074	-0.00034881	446.7599481767688	54.253	0.53926	54.253	54.008	54.547	0					21	12	3	0	0	0	0.028476	1	4397	4397		57.811	0	1	261530			41549	5542	34298	34322	44986	44986					0.05647570528572032
NVMKKGFDP	9	Unmodified	_NVMKKGFDP_					0	0	0		BTN1A1|p.E390Lfs*51|1|0.05|ENSG00000124557|chr6:26508760-26508761|-/CTTGATTTATTGGCAATGCTTCAATATTCAAATA|frameshift_variant;ENSG00000124557|ENST00000684113|BTN1A1	BTN1A1|p.E390Lfs*51|1|0.05|ENSG00000124557|chr6:26508760-26508761|-/CTTGATTTATTGGCAATGCTTCAATATTCAAATA|frameshift_variant	BTN1A1|p.E390Lfs*51|1|0.05|ENSG00000124557|chr6:26508760-26508761|-/CTTGATTTATTGGCAATGCTTCAATATTCAAATA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.7990112304688	2	518.268227	1034.5219	0.31571	0.00016362	-1.6706	-0.00086584	-1.3549	-0.00070222	518.2673600751062	96.708	0.51115	94.283	93.811	94.322	-2.4256					10	9	2	0	0	0	0.027462	1	8519	8519		10.866	0	1	23381			41550	163	34299	34323	44987	44987					0.006021140541179193
NVMSGLRKN	9	Unmodified	_NVMSGLRKN_					0	0	0			REV__ENST00000435236.2_1_X:98974480-98975440:-|nuORF	REV__ENST00000435236.2_1_X:98974480-98975440:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	509.778564453125	2	509.776751	1017.53895	0.95354	0.00048609	-0.21271	-0.00010844	0.74083	0.00037766	509.7766403318413	131.88	0.55884	131.88	131.62	132.18	0					17	11	2	0	0	0	0.50149	1	15312	15312		42.396	1.618	1	125780	+		41551	25767	34300	34324	44988	44988					0.030880346599246877
NVMSGLRKN	9	Unmodified	_NVMSGLRKN_					0	0	0			REV__ENST00000435236.2_1_X:98974480-98975440:-|nuORF	REV__ENST00000435236.2_1_X:98974480-98975440:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	509.776751	1017.53895	0.95354	0.00048609	-0.21271	-0.00010844	0.74083	0.00037766	509.7766403318413	131.88	0.55884	131.88	131.62	132.18	0	0	0	NaN	42.396	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125780	+		41552	25767	34300	34324							0.030880346599246877
NVNLSQAQMN	10	Unmodified	_NVNLSQAQMN_					0	0	0		ENSG00000178966|ENST00000445877|RMI1	ENSG00000178966|ENST00000445877|RMI1	ENSG00000178966|ENST00000445877|RMI1	MULTI-MSMS	OvCa99_classI_Rep5	1	559.7684936523438	2	559.76658	1117.51861	0.29802	0.00016682	-0.33901	-0.00018977	-0.040989	-2.2944E-05	559.7662312110674	22.965	1.217	22.965	22.531	23.748	0					35	25	2	0	0	0	0.818	1	268	268		16.717	1.8525	1	16962			41553	7788	34301	34325	44989	44989					-0.035451807905246824
NVNQSTKRK	9	Unmodified	_NVNQSTKRK_					0	0	0		ENSG00000152193|ENST00000282003|OBI1	ENSG00000152193|ENST00000282003|OBI1	ENSG00000152193|ENST00000282003|OBI1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.86181640625	2	537.804354	1073.59415	2.619	0.0014085	2.0427	0.0010986	4.6617	0.0025071	537.8055455403553	96.482	0.49934	96.482	96.253	96.753	0					23	10	3	0	0	0	0.027433	1	10583	10583		51.335	19.806	1	718300			41554	5608	34302	34326	44990	44990					0.06030164452022291
NVNQSTKRK	9	Unmodified	_NVNQSTKRK_					0	0	0		ENSG00000152193|ENST00000282003|OBI1	ENSG00000152193|ENST00000282003|OBI1	ENSG00000152193|ENST00000282003|OBI1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	537.804354	1073.59415	-0.77951	-0.00041922	3.6701	0.0019738	2.8906	0.0015546	537.8063522430194	97.337	1.9681	96.379	95.873	97.841	-0.95856	0.027431	0.00033983	NaN	60.972	101	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	379350			41555	5608	34302	34326							0.06030164452022291
NVNRRRRK	8	Unmodified	_NVNRRRRK_					0	0	0			REV__ENST00000590548.5_1_19:11597897-11616622:-|nuORF	REV__ENST00000590548.5_1_19:11597897-11616622:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.8152465820312	2	549.839397	1097.66424	-0.67517	-0.00037123	-2.0505	-0.0011275	-2.7257	-0.0014987	549.8389981756268	66.441	0.68652	62.951	62.756	63.442	-3.4902					20	13	2	0	0	0	0.028476	1	4881	4881		20.482	0	1	19572	+		41556	20712	34303	34327	44991	44991					0.11931507631152272
NVNRYFANLL	10	Unmodified	_NVNRYFANLL_					0	0	0		tr|A0A553SRK4|A0A553SRK4_NIACICd(2+)-exportingATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	tr|A0A553SRK4|A0A553SRK4_NIACICd(2+)-exportingATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	tr|A0A553SRK4|A0A553SRK4_NIACICd(2+)-exportingATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.8527526855469	3	408.555895	1222.64586	0.33728	0.0001378	-3.6745	-0.0015012	-3.3372	-0.0013634	408.55452541855465	37.293	0.37124	37.293	37.114	37.485	0					11	7	2	0	0	0	0.02676	1	2046	2046		20.837	3.004	1	38664			41557	34272	34304	34328	44992	44992					0.04343908145938258
NVNSQTMET	9	Unmodified	_NVNSQTMET_					0	0	0			REV__tr|A0A553SSS9|A0A553SSS9_NIACIPTSfructosetransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_03630PE=4SV=1	REV__tr|A0A553SSS9|A0A553SSS9_NIACIPTSfructosetransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_03630PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.7821044921875	2	512.224214	1022.43387	3.5403	0.0018134	3.9947	0.0020462	7.535	0.0038596	512.225758695824	88.127	0.3811	88.127	88.003	88.384	0					14	8	3	0	0	0	0.027433	1	9390	9390		45.972	15.469	1	153630	+		41558	30875	34305	34329	44993	44993					-0.07644551327166482
NVPAFWTM	8	Unmodified	_NVPAFWTM_					0	0	0		nc|ENSG00000120160|Q9NQ60-3|EQTN;ENSG00000120160|ENST00000380032|EQTN	nc|ENSG00000120160|Q9NQ60-3|EQTN	nc|ENSG00000120160|Q9NQ60-3|EQTN	MULTI-SECPEP	OvCa9_classI_Rep3	3	483.29290771484375	2	483.231113	964.447674	-0.73566	-0.0003555	-2.9817	-0.0014408	-3.7173	-0.0017963	483.2294315323642	94.634	0.40324	92.738	92.511	92.914	-1.8956					10	7	2	0	0	0	0.028476	1	6130	6130		25.45	0	1	16365			41559	3418	34306	34330	44994	44994					-0.03597229037404759
NVPAKLFL	8	Unmodified	_NVPAKLFL_					0	0	0			REV__nc|ENSG00000107949|Q9P287-4|BCCIP	REV__nc|ENSG00000107949|Q9P287-4|BCCIP	MULTI-MSMS	OvCa9_classI_Rep3	3	451.279296875	2	451.278921	900.543289	1.6818	0.00075895	-1.7921	-0.00080876	-0.11036	-4.9804E-05	451.2780132354674	111.71	1.8717	110.61	110.2	112.07	-1.1038					111	37	4	0	0	0	0.64377	1	8135	8135		54.765	0	1	1060800	+		41560	17867	34307	34331	44995	44995					0.08903867145113509
NVPKRVRA	8	Unmodified	_NVPKRVRA_					0	0	0			REV__TGM3|p.L630Pfs*5|1|0.56|ENSG00000125780|chr20:2339940-2339959|GCTGATGGTGGAGGGAAGCG/-|frameshift_variant	REV__TGM3|p.L630Pfs*5|1|0.56|ENSG00000125780|chr20:2339940-2339959|GCTGATGGTGGAGGGAAGCG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	470.2958679199219	2	470.295968	938.577383	-0.49251	-0.00023162	-0.04838	-2.2753E-05	-0.54089	-0.00025438	470.29591238963496	32.315	1.7376	29.606	29.382	31.119	-2.7097					90	34	5	0	0	0	0.71369	1	1071	1071		40.573	1.7665	1	1326000	+		41561	18745	34308	34332	44996	44996					0.10563708356744428
NVPRKLRG	8	Unmodified	_NVPRKLRG_					0	0	0			REV__KCNA4|p.C325Afs*18|1|0.1|ENSG00000182255|chr11:30011710-30011710|G/-|frameshift_variant	REV__KCNA4|p.C325Afs*18|1|0.1|ENSG00000182255|chr11:30011710-30011710|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	470.2961730957031	2	470.295968	938.577383	-0.49251	-0.00023162	-0.04838	-2.2753E-05	-0.54089	-0.00025438	470.29591238963496	32.315	1.7376	29.606	29.382	31.119	-2.7097					90	34	5	0	0	0	0.73626	1	1065	1065		33.516	4.366	1	1326000	+		41562	22275	34309	34333	44997	44997					0.10563708356744428
NVQAVIDSL	9	Unmodified	_NVQAVIDSL_					0	0	0		ENST00000580188.1_2_17:62503129-62515542:+|nuORF;ENSG00000258890|ENST00000556440|CEP95	ENST00000580188.1_2_17:62503129-62515542:+|nuORF	ENST00000580188.1_2_17:62503129-62515542:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.2721252441406	2	479.763832	957.513111	-0.58824	-0.00028222	0.56132	0.0002693	-0.026918	-1.2914E-05	479.76388820199656	69.682	0.28852	69.682	69.552	69.84	0					16	6	3	0	0	0	0.027462	1	6654	6654		26.693	0	1	356160			41563	9484	34310	34334	44998	44998					0.032654636892857525
NVQKLVNFES	10	Unmodified	_NVQKLVNFES_					0	0	0			REV__ENSG00000165731|ENST00000355710|RET	REV__ENSG00000165731|ENST00000355710|RET	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3162841796875	2	589.31422	1176.61389	3.3942	0.0020003	0.72459	0.00042701	4.1188	0.0024273	589.3144104722435	24.985	0.67472	22.276	22.153	22.828	-2.7097					32	15	3	0	0	0	0.75313	1	201	201		24.519	1.4767	1	69599	+		41564	21112	34311	34335	44999	44999					0.0326449567214695
NVQVISVPFS	10	Unmodified	_NVQVISVPFS_					0	0	0			REV__ENST00000545913.5_1_12:120126039-120222037:-|nuORF	REV__ENST00000545913.5_1_12:120126039-120222037:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.7619018554688	2	545.300581	1088.58661	1.24	0.00067617	4.2622	0.0023242	5.5022	0.0030003	545.3026485482234	113.93	0.4995	113.93	113.74	114.24	0					15	10	2	0	0	0	0.026956	1	13032	13032		26.693	0	1	189970	+		41565	27312	34312	34336	45000	45000					0.045860121317673475
NVQYVKQVD	9	Unmodified	_NVQYVKQVD_					0	0	0			REV__tr|A0A553SSJ5|A0A553SSJ5_NIACIAlpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_03025PE=3SV=1	REV__tr|A0A553SSJ5|A0A553SSJ5_NIACIAlpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_03025PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.7980346679688	2	546.787838	1091.56112	-0.23736	-0.00012979	3.2482	0.0017761	3.0108	0.0016463	546.788825928738	89.281	0.44051	86.678	86.532	86.972	-2.6027					16	8	2	0	0	0	0.027462	1	7636	7636		30.504	17.692	1	28261	+		41566	30842	34313	34337	45001	45001					0.019005376093446102
NVRAYEIKL	9	Unmodified	_NVRAYEIKL_					0	0	0			REV__ENST00000488099.1_1_2:38809156-38812824:-|nuORF	REV__ENST00000488099.1_1_2:38809156-38812824:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.3250732421875	2	553.321848	1104.62914	-0.64975	-0.00035952	0.35288	0.00019526	-0.29687	-0.00016426	553.3219091283219	106.4	0.92504	104.38	103.9	104.82	-2.0161					44	17	4	0	0	0	0.26076	1	9708	9708		67.494	3.2864	1	321910	+		41567	26616	34314	34338	45002	45002					0.08101407259982807
NVRAYEIKL	9	Unmodified	_NVRAYEIKL_					0	0	0			REV__ENST00000488099.1_1_2:38809156-38812824:-|nuORF	REV__ENST00000488099.1_1_2:38809156-38812824:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	553.321848	1104.62914	0.22646	0.0001253	-0.87649	-0.00048498	-0.65003	-0.00035968	553.321266554733	104.82	0.64042	104.24	103.92	104.56	-0.57639	-0.10676	-0.00049575	NaN	67.494	38	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	292330	+		41568	26616	34314	34338							0.08101407259982807
NVRAYEIKL	9	Unmodified	_NVRAYEIKL_					0	0	0			REV__ENST00000488099.1_1_2:38809156-38812824:-|nuORF	REV__ENST00000488099.1_1_2:38809156-38812824:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	553.321848	1104.62914	-0.026185	-1.4489E-05	-0.92534	-0.00051201	-0.95153	-0.0005265	553.3212100903397	105.77	0.6765	104.42	104.09	104.77	-1.3482	0.072457	-0.00054981	NaN	67.494	34	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217780	+		41569	26616	34314	34338							0.08101407259982807
NVRAYEIKL	9	Unmodified	_NVRAYEIKL_					0	0	0			REV__ENST00000488099.1_1_2:38809156-38812824:-|nuORF	REV__ENST00000488099.1_1_2:38809156-38812824:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	553.321848	1104.62914	-0.64975	-0.00035952	0.35288	0.00019526	-0.29687	-0.00016426	553.3219091283219	106.4	0.92504	104.38	103.9	104.82	-2.0161	0.034305	0.00086473	NaN	67.494	44	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	321910	+		41570	26616	34314	34338							0.08101407259982807
NVRCLQHF	8	Unmodified	_NVRCLQHF_					0	0	0		nc|ENSG00000105976|P08581-2|MET;ENSG00000105976|ENST00000397752|MET;nc|ENSG00000105976|P08581-3|MET	nc|ENSG00000105976|P08581-2|MET	nc|ENSG00000105976|P08581-2|MET	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.28448486328125	2	508.758361	1015.50217	-0.50542	-0.00025714	-0.58619	-0.00029823	-1.0916	-0.00055537	508.7578766513204	83.124	0.87726	80.441	80.124	81.002	-2.6829					29	17	2	0	0	0	0.028476	1	6898	6898		47.916	9.1095	1	93082			41571	14943	34315	34339	45003	45003					-0.004962171659940395
NVREQVGRL	9	Unmodified	_NVREQVGRL_					0	0	0			REV__ENSG00000052841|ENST00000039989|TTC17	REV__ENSG00000052841|ENST00000039989|TTC17	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.340576171875	2	535.806897	1069.59924	-1.4007	-0.00075052	2.0667	0.0011074	0.66598	0.00035684	535.807737829825	48.421	0.56818	45.314	45.141	45.709	-3.1077					15	10	3	0	0	0	0.027462	1	2681	2681		39.253	14.734	1	20984	+		41572	16692	34316	34340	45004	45004					0.06722468314683283
NVRFRSVGTL	10	Unmodified	_NVRFRSVGTL_					0	0	0			REV__tr|A0A553SK86|A0A553SK86_NIACITypeIVpilustwitchingmotilityproteinPilTOS=NialliacirculansOX=1397GN=CEQ21_18340PE=3SV=1	REV__tr|A0A553SK86|A0A553SK86_NIACITypeIVpilustwitchingmotilityproteinPilTOS=NialliacirculansOX=1397GN=CEQ21_18340PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.300048828125	2	574.830372	1147.64619	-0.31789	-0.00018273	-0.67885	-0.00039022	-0.99674	-0.00057295	574.8296438079196	98.275	1.17	95.896	95.675	96.845	-2.3786					36	22	2	0	0	0	0.026714	1	8822	8822		51.193	24.5	1	79506	+		41573	30094	34317	34341	45005	45005					0.0782732786581164
NVRGKNDTF	9	Unmodified	_NVRGKNDTF_					0	0	0			REV__tr|A0A7D6VMT7|A0A7D6VMT7_9CLOTCarbohydratebindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13070PE=4SV=1	REV__tr|A0A7D6VMT7|A0A7D6VMT7_9CLOTCarbohydratebindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13070PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.3040771484375	2	525.76998	1049.52541	-0.61625	-0.00032401	4.4865	0.0023589	3.8702	0.0020348	525.7714625505689	61.847	0.25417	61.847	61.784	62.038	0					6	5	2	0	0	0	0.027462	1	5474	5474		15.642	0	1	61547	+		41574	31147	34318	34342	45006	45006					0.0026250015230289137
NVRGTIGAFKI	11	Unmodified	_NVRGTIGAFKI_					0	0	0			REV__tr|A0A7D6VTW1|A0A7D6VTW1_9CLOTNicotinate-nucleotide--dimethylbenzimidazolephosphoribosyltransferaseOS=ClostridiumintestinaleOX=36845GN=cobTPE=3SV=1	REV__tr|A0A7D6VTW1|A0A7D6VTW1_9CLOTNicotinate-nucleotide--dimethylbenzimidazolephosphoribosyltransferaseOS=ClostridiumintestinaleOX=36845GN=cobTPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.3229370117188	2	588.348397	1174.68224	-1.0827	-0.000637	3.7848	0.0022268	2.7021	0.0015898	588.3504596131655	65.81	0.62554	65.81	65.586	66.212	0					44	15	4	0	0	0	0.025861	1	6058	6058		23.523	0	1	2162900	+		41575	31634	34319	34343	45007	45007					0.10188785042646487
NVRIATTAL	9	Unmodified	_NVRIATTAL_					0	0	0		ENSG00000162511|ENST00000294507|LAPTM5;ENST00000476492.1_1_1:31215096-31230592:-|nuORF	ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	MULTI-MSMS	OvCa9_classI_Rep2	2	479.7862243652344	2	479.787641	957.56073	-0.50284	-0.00024126	-0.32421	-0.00015555	-0.82705	-0.00039681	479.7875589917212	77.574	3.5714	75.784	75.103	78.674	-1.7894					199	69	4	0	0	0	0.014964	17	6477	6413;6418;6424;6430;6436;6442;6448;6453;6459;6465;6471;6477;6483;6489;6501;6507;6514		153.04	65.282	1	2386800			41576	6188	34320	34344	45008;45009;45010;45011;45012;45013;45014;45015;45016;45017;45018;45019;45020;45021;45022;45023;45024	45019					0.0802516268013278
NVRIATTAL	9	Unmodified	_NVRIATTAL_					0	0	0		ENSG00000162511|ENST00000294507|LAPTM5;ENST00000476492.1_1_1:31215096-31230592:-|nuORF	ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	MULTI-MSMS	OvCa9_classI_Rep3	3	479.7879333496094	2	479.787641	957.56073	-0.2694	-0.00012926	-0.52811	-0.00025338	-0.79751	-0.00038264	479.787479769534	77.778	3.6765	75.425	74.734	78.41	-2.3527					193	72	5	0	0	0	0.025955	14	4146	4073;4079;4085;4091;4097;4104;4116;4122;4127;4134;4140;4146;4152;4166		139.97	52.216	1	4769100			41577	6188	34320	34344	45025;45026;45027;45028;45029;45030;45031;45032;45033;45034;45035;45036;45037;45038	45036					0.0802516268013278
NVRIATTAL	9	Unmodified	_NVRIATTAL_					0	0	0		ENSG00000162511|ENST00000294507|LAPTM5;ENST00000476492.1_1_1:31215096-31230592:-|nuORF	ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.7879638671875	2	479.787641	957.56073	0.085234	4.0894E-05	-1.0035	-0.00048146	-0.91824	-0.00044056	479.78721248781835	78.492	3.0769	75.676	75.409	78.486	-2.8165					164	63	4	0	0	0	0.030815	8	6331	6320;6331;6344;6357;6368;6380;6393;6407		134.81	45.402	1	5489700			41578	6188	34320	34344	45039;45040;45041;45042;45043;45044;45045;45046	45040					0.0802516268013278
NVRIATTAL	9	Unmodified	_NVRIATTAL_					0	0	0		ENSG00000162511|ENST00000294507|LAPTM5;ENST00000476492.1_1_1:31215096-31230592:-|nuORF	ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	MULTI-MATCH	OvCa99_classI_Rep5	1		2	479.787641	957.56073	2.6715	0.0012817	-3.0237	-0.0014507	-0.35217	-0.00016897	479.7861408590416	75.76	0.23525	75.76	75.639	75.874	0	0.098865	-0.0023168	NaN	153.04	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54918			41579	6188	34320	34344							0.0802516268013278
NVRIVQQQN	9	Unmodified	_NVRIVQQQN_					0	0	0			REV__ENSG00000135355|ENST00000369352|GJA10	REV__ENSG00000135355|ENST00000369352|GJA10	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.84716796875	2	549.804354	1097.59415	-0.00079844	-4.3899E-07	3.6443	0.0020037	3.6435	0.0020032	549.8062819768887	70.756	0.4285	70.756	70.565	70.994	0					17	10	2	0	0	0	0.027448	1	6796	6796		63.306	2.3343	1	2706500	+		41580	19278	34321	34345	45047	45047					0.049261644520584014
NVRKEIDK	8	Unmodified	_NVRKEIDK_					0	0	0			REV__tr|A0A553SG27|A0A553SG27_NIACItRNAepoxyqueuosine(34)reductaseQueGOS=NialliacirculansOX=1397GN=queGPE=4SV=1	REV__tr|A0A553SG27|A0A553SG27_NIACItRNAepoxyqueuosine(34)reductaseQueGOS=NialliacirculansOX=1397GN=queGPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	501.29046630859375	2	501.290548	1000.56654	-1.4695	-0.00073667	1.3149	0.00065914	-0.15466	-7.7529E-05	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.745	1	11036	11036		29.15	0	1	97838	+		41581	29652	34322	34346	45048	45048					0.06628261191804086
NVRPVPLEL	9	Unmodified	_NVRPVPLEL_					0	0	0		SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant;ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96948912-96949730:-|nuORF	SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	518.8096313476562	2	518.811116	1035.60768	-0.2394	-0.0001242	-0.5108	-0.00026501	-0.7502	-0.00038921	518.8107984710884	98.575	1.9848	97.682	97.313	99.298	-0.89305					72	39	2	0	0	0	0.064985	1	8965	8965		110.12	44.654	1	579350			41582	5119	34323	34347	45049	45049					0.09130022231261137
NVRPVPLEL	9	Unmodified	_NVRPVPLEL_					0	0	0		SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant;ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96948912-96949730:-|nuORF	SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	518.811116	1035.60768	-0.00042895	-2.2255E-07	-2.0777	-0.0010779	-2.0782	-0.0010782	518.8107954117716	99.381	1.892	97.696	97.423	99.315	-1.685	0.022399	-0.0024079	NaN	110.12	104	37	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	612030			41583	5119	34323	34347							0.09130022231261137
NVRPVPLEL	9	Unmodified	_NVRPVPLEL_					0	0	0		SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant;ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96948912-96949730:-|nuORF	SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	518.811116	1035.60768	-1.3201	-0.00068486	0.8296	0.0004304	-0.49046	-0.00025446	518.8115100258975	99.968	1.6006	97.642	97.315	98.916	-2.3253	-0.031188	0.00060883	NaN	110.12	57	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	734000			41584	5119	34323	34347							0.09130022231261137
NVRVSRELP	9	Unmodified	_NVRVSRELP_					0	0	0		ENST00000470354.1_1_7:100275135-100275402:+|nuORF;nc|ENSG00000172354|P62879-2|GNB2;ENSG00000172354|ENST00000303210|GNB2;ENSG00000114450|ENST00000232564|GNB4	ENST00000470354.1_1_7:100275135-100275402:+|nuORF	ENST00000470354.1_1_7:100275135-100275402:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.7843627929688	2	535.309272	1068.60399	1.5461	0.00082763	2.5612	0.001371	4.1073	0.0021987	535.3103219828203	148.12	0.34335	148.12	147.93	148.28	0					9	6	2	0	0	0	0.027462	1	17336	17336		47.657	12.039	1	22525			41585	3021	34324	34348	45050	45050					0.07243352457408037
NVSAAQQEIN	10	Unmodified	_NVSAAQQEIN_					0	0	0		CON__Q9TT36	CON__Q9TT36	CON__Q9TT36	MULTI-MSMS	OvCa9_classI_Rep3	3	537.265869140625	2	537.264727	1072.5149	1.5965	0.00085776	-2.5222	-0.0013551	-0.92571	-0.00049735	537.2632206474979	106.63	1.7205	105.36	105.01	106.73	-1.267					78	33	4	0	0	0	0.69928	1	7518	7518		30.569	1.3988	1	642900		+	41586	665	34325	34349	45051	45051					-0.018455272927440092
NVSGMPQE	8	Unmodified	_NVSGMPQE_					0	0	0		RALGAPB|p.C811Yfs*8|1|0.28|ENSG00000170471|chr20:38539828-38539829|GC/-|frameshift_variant;RALGAPB|p.D897Efs*7|1|0.04|ENSG00000170471|chr20:38541169-38541169|T/-|frameshift_variant;nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;ENST00000461423.1_1_20:37137783-37175090:+|nuORF;nc|ENSG00000170471|Q86X10-2|RALGAPB	RALGAPB|p.C811Yfs*8|1|0.28|ENSG00000170471|chr20:38539828-38539829|GC/-|frameshift_variant	RALGAPB|p.C811Yfs*8|1|0.28|ENSG00000170471|chr20:38539828-38539829|GC/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	431.19403076171875	2	431.192185	860.369817	1.9481	0.00084	3.8639	0.0016661	5.812	0.0025061	431.19384068419987	129.11	0.98819	127.66	127.35	128.34	-1.4565					40	19	3	0	0	0	0.74266	1	12361	12361		30.318	6.115	1	84724			41587	7107	34326	34350	45052	45052					-0.06595286693448088
NVSGMPQE	8	Unmodified	_NVSGMPQE_					0	0	0		RALGAPB|p.C811Yfs*8|1|0.28|ENSG00000170471|chr20:38539828-38539829|GC/-|frameshift_variant;RALGAPB|p.D897Efs*7|1|0.04|ENSG00000170471|chr20:38541169-38541169|T/-|frameshift_variant;nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;ENST00000461423.1_1_20:37137783-37175090:+|nuORF;nc|ENSG00000170471|Q86X10-2|RALGAPB	RALGAPB|p.C811Yfs*8|1|0.28|ENSG00000170471|chr20:38539828-38539829|GC/-|frameshift_variant	RALGAPB|p.C811Yfs*8|1|0.28|ENSG00000170471|chr20:38539828-38539829|GC/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	431.192185	860.369817	0.68709	0.00029627	4.9893	0.0021514	5.6764	0.0024476	431.19424367438194	127.91	1.0361	127.68	127.39	128.43	-0.22697	0.019726	0.00033593	NaN	30.318	44	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90535			41588	7107	34326	34350							-0.06595286693448088
NVSGMPQE	8	Unmodified	_NVSGMPQE_					0	0	0		RALGAPB|p.C811Yfs*8|1|0.28|ENSG00000170471|chr20:38539828-38539829|GC/-|frameshift_variant;RALGAPB|p.D897Efs*7|1|0.04|ENSG00000170471|chr20:38541169-38541169|T/-|frameshift_variant;nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB;ENST00000461423.1_1_20:37137783-37175090:+|nuORF;nc|ENSG00000170471|Q86X10-2|RALGAPB	RALGAPB|p.C811Yfs*8|1|0.28|ENSG00000170471|chr20:38539828-38539829|GC/-|frameshift_variant	RALGAPB|p.C811Yfs*8|1|0.28|ENSG00000170471|chr20:38539828-38539829|GC/-|frameshift_variant	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	431.192185	860.369817	1.2658	0.00054579	4.7984	0.002069	6.0642	0.0026148	431.19421791012206	128.73	0.83997	127.64	127.42	128.26	-1.0933	-0.018308	0.0001713	NaN	30.318	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48245			41589	7107	34326	34350							-0.06595286693448088
NVSHILCAAL	10	Unmodified	_NVSHILCAAL_					0	0	0			REV__ENST00000546500.5_1_12:54674031-54674238:+|nuORF	REV__ENST00000546500.5_1_12:54674031-54674238:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	520.7827758789062	2	520.781502	1039.54845	0.2772	0.00014436	3.4228	0.0017825	3.7	0.0019269	520.7831116898267	31.623	1.0879	28.913	28.74	29.828	-2.7097					47	21	4	0	0	0	0.78463	1	971	971		20.947	0	1	197730	+		41590	27421	34327	34351	45053	45053					0.03025802945421674
NVSIFLLVI	9	Unmodified	_NVSIFLLVI_					0	0	0			REV__tr|A0A7D6VQ28|A0A7D6VQ28_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13885PE=4SV=1	REV__tr|A0A7D6VQ28|A0A7D6VQ28_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13885PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.7496032714844	2	509.320786	1016.62702	-1.1333	-0.00057721	-2.7227	-0.0013867	-3.856	-0.0019639	509.319269946543	43.715	0.51718	43.715	43.435	43.952	0					18	11	2	0	0	0	0.027417	1	2886	2886		55.504	0	1	95554	+		41591	31294	34328	34352	45054	45054					0.11936978522169284
NVSIFLLVI	9	Unmodified	_NVSIFLLVI_					0	0	0			REV__tr|A0A7D6VQ28|A0A7D6VQ28_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13885PE=4SV=1	REV__tr|A0A7D6VQ28|A0A7D6VQ28_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13885PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.749755859375	2	509.320786	1016.62702	-0.10808	-5.5047E-05	-2.7105	-0.0013805	-2.8186	-0.0014356	509.31939366375343	43.153	0.59566	43.153	42.883	43.478	0					30	13	3	0	0	0	0.027441	1	2827	2827		37.159	1.5408	1	431240	+		41592	31294	34328	34352	45055	45055					0.11936978522169284
NVSILAVN	8	Unmodified	_NVSILAVN_					0	0	0		nc|ENSG00000168619|Q9Y3Q7-3|ADAM18;nc|ENSG00000168619|Q9Y3Q7-2|ADAM18;ENSG00000168619|ENST00000265707|ADAM18	nc|ENSG00000168619|Q9Y3Q7-3|ADAM18	nc|ENSG00000168619|Q9Y3Q7-3|ADAM18	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.2740783691406	2	415.242535	828.470518	2.9419	0.0012216	4.2269	0.0017552	7.1688	0.0029768	415.2442164281389	120.63	1.0809	120.63	120.3	121.38	0					36	25	2	0	0	0	0.028476	1	13918	13918		29.15	0	1	532150			41593	6926	34329	34353	45056	45056					0.04942113351705757
NVSKRVHSI	9	Unmodified	_NVSKRVHSI_					0	0	0			REV__ENSG00000180917|ENST00000434935|CMTR2	REV__ENSG00000180917|ENST00000434935|CMTR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2708740234375	2	520.30399	1038.59343	2.5349	0.0013189	0.3149	0.00016384	2.8498	0.0014827	520.303857461263	89.766	0.37704	89.766	89.6	89.977	0					14	8	2	0	0	0	0.027462	1	9598	9598		20.947	0	1	226500	+		41594	22206	34330	34354	45057	45057					0.07567369802995927
NVSPEIKT	8	Unmodified	_NVSPEIKT_					0	0	0			REV__ENSG00000169223|ENST00000303127|LMAN2	REV__ENSG00000169223|ENST00000303127|LMAN2	MSMS	OvCa99_classI_Rep5	1	444.246826171875	2	444.245275	886.475997	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.077	1	69.077	68.577	69.577	0								0	0	0	0.30129	1	6554	6554		38.806	0.99462	1		+		41595	21446	34331	34355	45058	45058					0.028217921435384596
NVSQKDWML	9	Unmodified	_NVSQKDWML_					0	0	0		chr1:201135815-201151761|137|10.83|0.4|4.77|-|1|TMEM9,TMEM9|1	chr1:201135815-201151761|137|10.83|0.4|4.77|-|1|TMEM9,TMEM9|1	chr1:201135815-201151761|137|10.83|0.4|4.77|-|1|TMEM9,TMEM9|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.7772827148438	2	560.776416	1119.53828	1.1218	0.00062908	-1.5451	-0.00086647	-0.42333	-0.00023739	560.775431868119	75.961	1.0437	73.022	72.741	73.785	-2.9389					39	21	3	0	0	0	0.33652	1	6017	6017		58.782	5.8453	1	218100			41596	251	34332	34356	45059	45059					-0.01670804779791979
NVSQKDWML	9	Unmodified	_NVSQKDWML_					0	0	0		chr1:201135815-201151761|137|10.83|0.4|4.77|-|1|TMEM9,TMEM9|1	chr1:201135815-201151761|137|10.83|0.4|4.77|-|1|TMEM9,TMEM9|1	chr1:201135815-201151761|137|10.83|0.4|4.77|-|1|TMEM9,TMEM9|1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	560.776416	1119.53828	-0.1033	-5.7925E-05	-0.59784	-0.00033525	-0.70113	-0.00039318	560.7762798695348	75.028	1.0352	73.057	72.586	73.622	-1.9711	0.01754	0.00062205	NaN	58.782	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46503			41597	251	34332	34356							-0.01670804779791979
NVSSLADLKP	10	Unmodified	_NVSSLADLKP_					0	0	0		ENSG00000178235|ENST00000674365|SLITRK1	ENSG00000178235|ENST00000674365|SLITRK1	ENSG00000178235|ENST00000674365|SLITRK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.739013671875	2	522.290214	1042.56587	-1.0229	-0.00053426	0.019927	1.0407E-05	-1.003	-0.00052386	522.2926153131701	69.669	0.53593	69.669	69.347	69.883	0					16	12	2	0	0	0	0.02676	1	6594	6594		58.23	12.258	1	311030			41598	7744	34333	34357	45060	45060					0.04629421752065355
NVTAQPRGK	9	Unmodified	_NVTAQPRGK_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.3091125488281	2	485.775065	969.535577	2.098	0.0010192	3.5529	0.0017259	5.6509	0.0027451	485.7767771033475	106.6	0.35603	106.6	106.36	106.72	0					10	7	2	0	0	0	0.027448	1	12002	12002		44.117	27.644	1	81086	+		41599	28942	34334	34358	45061	45061					0.04959107877573388
NVTEFIFWG	9	Unmodified	_NVTEFIFWG_					0	0	0		ENSG00000174982|ENST00000641692|OR4S2	ENSG00000174982|ENST00000641692|OR4S2	ENSG00000174982|ENST00000641692|OR4S2	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.8502807617188	2	556.7742	1111.53385	0.12152	6.7659E-05	-0.58095	-0.00032346	-0.45943	-0.0002558	556.7734643143899	51.107	0.42519	51.107	50.949	51.374	0					21	9	3	0	0	0	0.027462	1	3907	3907		27.882	3.6795	1	301850			41600	7504	34335	34359	45062	45062					-0.01745945931065762
NVTILNKT	8	Unmodified	_NVTILNKT_					0	0	0			REV__tr|A0A553SM42|A0A553SM42_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_21820PE=4SV=1	REV__tr|A0A553SM42|A0A553SM42_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_21820PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	451.2904968261719	2	451.768917	901.523281	-0.30871	-0.00013947	0.12466	5.6317E-05	-0.18405	-8.315E-05	451.768863999545	73.202	1.4352	69.806	69.543	70.978	-3.3961					71	29	4	0	0	0	0.028476	1	5771	5771		68.787	0	1	708190	+		41601	30292	34336	34360	45063	45063					0.06858071414524147
NVTKRRKP	8	Unmodified	_NVTKRRKP_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.2408752441406	2	499.814525	997.614496	-0.59574	-0.00029776	-2.7062	-0.0013526	-3.3019	-0.0016504	499.8145476181317	29.194	0.49893	29.194	28.937	29.436	0					27	9	4	0	0	0	0.028476	1	1018	1018		12.959	0.75233	1	58131	+		41602	19860	34337	34361	45064	45064					0.1155937990251914
NVTLDTTAL	9	Unmodified	_NVTLDTTAL_					0	0	0			REV__nc|ENSG00000165271|Q9H6R4-3|NOL6	REV__nc|ENSG00000165271|Q9H6R4-3|NOL6	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.256591796875	2	474.25584	946.497126	0.656	0.00031111	-0.94884	-0.00044999	-0.29283	-0.00013888	474.25516845466626	61.757	1.934	58.299	57.516	59.45	-3.4577					80	39	5	0	0	0	0.16524	1	4247	4247		82.305	2.854	1	811690	+		41603	21075	34338	34362	45065	45065					0.02173757452362679
NVTNYKYD	8	Unmodified	_NVTNYKYD_					0	0	0		tr|A0A7D6VMT7|A0A7D6VMT7_9CLOTCarbohydratebindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13070PE=4SV=1	tr|A0A7D6VMT7|A0A7D6VMT7_9CLOTCarbohydratebindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13070PE=4SV=1	tr|A0A7D6VMT7|A0A7D6VMT7_9CLOTCarbohydratebindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13070PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.30303955078125	2	508.737814	1015.46108	-0.89003	-0.00045279	4.435	0.0022563	3.545	0.0018035	508.7402197642987	82.253	0.68301	79.57	79.393	80.076	-2.6829					16	13	2	0	0	0	0.028476	1	6830	6830		44.117	4.864	1	24257			41604	34669	34339	34363	45066	45066					-0.046036997244755185
NVTSLPCLSL	10	Unmodified	_NVTSLPCLSL_					0	0	0		nc|ENSG00000145700|Q8N7Z5|ANKRD31;ENSG00000145700|ENST00000506364|ANKRD31	nc|ENSG00000145700|Q8N7Z5|ANKRD31	nc|ENSG00000145700|Q8N7Z5|ANKRD31	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.3070678710938	2	523.781167	1045.54778	-0.83439	-0.00043704	-4.1602	-0.002179	-4.9946	-0.0026161	523.7793035083162	117.14	0.94217	115.78	115.51	116.45	-1.3645					21	17	2	0	0	0	0.026891	1	11018	11018		24.519	4.5224	1	22604			41605	5237	34340	34364	45067	45067					0.026829635057538326
NVVGVVVTL	9	Unmodified	_NVVGVVVTL_					0	0	0		ENSG00000267206|ENST00000341206|LCN6	ENSG00000267206|ENST00000341206|LCN6	ENSG00000267206|ENST00000341206|LCN6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.26739501953125	2	450.28166	898.548768	-0.47217	-0.00021261	0.10962	4.9361E-05	-0.36255	-0.00016325	450.2816255609477	71.832	1.9426	68.376	68.024	69.967	-3.4563					81	39	3	0	0	0	0.027047	1	5536	5536		87.754	21.951	1	651380			41606	9531	34341	34365	45068	45068					0.09543545936958253
NVVIEKELA	9	Unmodified	_NVVIEKELA_					0	0	0			REV__GLT1D1|p.G316E|1|0.89|ENSG00000151948|chr12:128982996-128982996|G/A|missense_variant	REV__GLT1D1|p.G316E|1|0.89|ENSG00000151948|chr12:128982996-128982996|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	507.7960510253906	2	507.795132	1013.57571	0.46567	0.00023646	-0.74855	-0.00038011	-0.28288	-0.00014365	507.79468027624847	128.34	1.2845	127.25	126.97	128.26	-1.0933					67	25	4	0	0	0	0.53483	1	10128	10128		39.253	1.7447	1	352990	+		41607	20264	34342	34366	45069	45069					0.06946609757471833
NVVIGRNVPI	10	Unmodified	_NVVIGRNVPI_					0	0	0			REV__tr|A0A553STK4|A0A553STK4_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05045PE=3SV=1	REV__tr|A0A553STK4|A0A553STK4_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_05045PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	540.8317260742188	2	540.82984	1079.64513	-0.46856	-0.00025341	3.3565	0.0018153	2.8879	0.0015619	540.8317360682152	123.45	3.5017	123.21	122.89	126.4	-0.23193					177	70	5	0	0	0	0.66721	1	12021	12021		34.173	2.6427	1	7794400	+		41608	30978	34343	34367	45070	45070					0.10849113496897189
NVVLRTALL	9	Unmodified	_NVVLRTALL_					0	0	0		tr|A0A7D6VNF4|A0A7D6VNF4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17625PE=4SV=1	tr|A0A7D6VNF4|A0A7D6VNF4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17625PE=4SV=1	tr|A0A7D6VNF4|A0A7D6VNF4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17625PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	499.8227233886719	2	499.821484	997.628415	1.1453	0.00057243	1.2618	0.00063069	2.4071	0.0012031	499.82201518613283	98.307	0.47444	98.307	98.121	98.596	0					24	10	3	0	0	0	0.27001	1	10834	10834		66.429	9.7082	1	1457300			41609	34700	34344	34368	45071	45071					0.12950612610927692
NVVLRTALL	9	Unmodified	_NVVLRTALL_					0	0	0		tr|A0A7D6VNF4|A0A7D6VNF4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17625PE=4SV=1	tr|A0A7D6VNF4|A0A7D6VNF4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17625PE=4SV=1	tr|A0A7D6VNF4|A0A7D6VNF4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17625PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	499.821484	997.628415	-1.2198	-0.00060967	-1.0281	-0.00051388	-2.2479	-0.0011235	499.82101091181346	100.96	0.30064	98.693	98.446	98.746	-2.2665	0.19301	-0.002231	NaN	66.429	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14593			41610	34700	34344	34368							0.12950612610927692
NVVRSFLD	8	Unmodified	_NVVRSFLD_					0	0	0		ENSG00000146918|ENST00000356309|NCAPG2;nc|ENSG00000146918|Q86XI2-2|NCAPG2;ENST00000432615.5_1_7:158424360-158447416:-|nuORF;ENST00000467785.5_1_7:158424360-158447992:-|nuORF	ENSG00000146918|ENST00000356309|NCAPG2	ENSG00000146918|ENST00000356309|NCAPG2	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.7757873535156	2	475.258717	948.50288	0.5034	0.00023925	0.13848	6.5815E-05	0.64188	0.00030506	475.25875592112146	67.258	0.50805	67.258	67.096	67.604	0					24	12	3	0	0	0	0.028476	1	6263	6263		38.806	3.6054	1	496850			41611	5318	34345	34369	45072	45072					0.026569007547209367
NVVTKNKD	8	Unmodified	_NVVTKNKD_					0	0	0		nc|ENSG00000138363|P31939-2|ATIC;ENSG00000138363|ENST00000236959|ATIC;ENST00000443953.5_1_2:216177073-216214375:+|nuORF;ENST00000467388.1_1_2:216203501-216211697:+|nuORF;ENST00000446622.5_1_2:216199652-216212358:+|nuORF	nc|ENSG00000138363|P31939-2|ATIC	nc|ENSG00000138363|P31939-2|ATIC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.7776184082031	2	459.256174	916.497795	-1.1732	-0.0005388	2.3309	0.0010705	1.1577	0.00053167	459.25725064709076	54.977	0.8725	51.73	51.183	52.055	-3.2474					35	16	4	0	0	0	0.028476	1	3388	3388		56.721	39.356	1	209930			41612	4678	34346	34370	45073	45073					0.03620596892085359
NVWLRLEGAV	10	Unmodified	_NVWLRLEGAV_					0	0	0			REV__nc|ENSG00000215041|Q96JN8-2|NEURL4	REV__nc|ENSG00000215041|Q96JN8-2|NEURL4	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.2401123046875	2	578.827298	1155.64004	-1.5188	-0.00087915	-3.1308	-0.0018122	-4.6496	-0.0026913	578.8256937669289	63.889	0.52266	63.889	63.648	64.17	0					19	12	2	0	0	0	0.026802	1	5756	5756		42.396	16.822	1	436810	+		41613	23309	34347	34371	45074	45074					0.06844809634276317
NVWNICPL	8	Unmodified	_NVWNICPL_					0	0	0		chr16:32880807-32883572|139|12.35|0.06|7.63|-|2|None,SLC6A10P|1;chr16:32882780-32883572|214|22.18|0.54|5.36|-|2|SLC6A10P,SLC6A10P|1;chr16:32879531-32883572|123|15.75|0.08|7.63|-|2|SLC6A10P,SLC6A10P|1;ENST00000476466.1_1_X:152954203-152956038:+|nuORF;nc|ENSG00000130821|P48029-4|SLC6A8;ENSG00000130821|ENST00000253122|SLC6A8	chr16:32880807-32883572|139|12.35|0.06|7.63|-|2|None,SLC6A10P|1	chr16:32880807-32883572|139|12.35|0.06|7.63|-|2|None,SLC6A10P|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.79400634765625	2	479.744388	957.474223	-0.03806	-1.8259E-05	3.0152	0.0014465	2.9771	0.0014283	479.745963403635	71.544	0.48415	71.544	71.308	71.792	0					14	11	2	0	0	0	0.028476	1	6918	6918		60.294	26.121	1	184360			41614	378	34348	34372	45075	45075					-0.0062154014608495345
NVYEKLIII	9	Unmodified	_NVYEKLIII_					0	0	0			REV__LRBA-SH3D19|1|fusion	REV__LRBA-SH3D19|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.833740234375	2	552.8368	1103.65905	1.8283	0.0010107	-2.3302	-0.0012882	-0.50194	-0.00027749	552.8354720294342	138.05	0.79741	136.52	136.29	137.09	-1.5284					21	18	2	0	0	0	0.027462	1	13480	13480		25.45	2.4077	1	19788	+		41615	17943	34349	34373	45076	45076					0.1113634620535322
NVYFHGLSFK	10	Unmodified	_NVYFHGLSFK_					0	0	0		ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|8.709205843380579|0.1449238599365492|5.91|406.0|39|2|anti-sense	ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|8.709205843380579|0.1449238599365492|5.91|406.0|39|2|anti-sense	ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|8.709205843380579|0.1449238599365492|5.91|406.0|39|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3143310546875	2	606.314023	1210.61349	-0.36546	-0.00022158	0.090632	5.4951E-05	-0.27483	-0.00016663	606.313846558734	100.21	4.8548	97.886	97.315	102.17	-2.3253					183	94	4	0	0	0	0.64697	1	8962	8962		36.447	3.6962	1	584000			41616	14315	34350	34374	45077	45077					0.016611207429377828
NVYRKKLKY	9	Unmodified	_NVYRKKLKY_					0	0	0		ENST00000510957.1_1_22:31049909-31050715:-|nuORF	ENST00000510957.1_1_22:31049909-31050715:-|nuORF	ENST00000510957.1_1_22:31049909-31050715:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.2129211425781	3	404.580152	1210.71863	1.6358	0.00066182	-1.3917	-0.00056306	0.24409	9.8755E-05	404.5794720915577	63.538	0.4772	63.538	63.296	63.773	0					31	11	4	0	0	0	0.027462	1	5742	5742		24.519	0	1	1501600			41617	12979	34351	34375	45078	45078					0.12169661939356047
NVYTVPDSYF	10	Unmodified	_NVYTVPDSYF_					0	0	0		ENSG00000122176|ENST00000354955|FMOD	ENSG00000122176|ENST00000354955|FMOD	ENSG00000122176|ENST00000354955|FMOD	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.5547180175781	3	402.188878	1203.5448	0.71246	0.00028654	0.42149	0.00016952	1.1339	0.00045606	402.1886602075104	37.714	0.18504	37.714	37.576	37.761	0					5	3	2	0	0	0	0.027056	1	2080	2080		6.3209	0	1	13214			41618	3521	34352	34376	45079	45079					-0.0488258834741373
NWGVWLVL	8	Unmodified	_NWGVWLVL_					0	0	0			REV__ENST00000533581.1_1_1:31658018-31661124:-|nuORF	REV__ENST00000533581.1_1_1:31658018-31661124:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3243713378906	2	493.776545	985.538538	-0.53158	-0.00026248	-3.2583	-0.0016089	-3.7899	-0.0018714	493.7747819749472	78.476	0.99457	76.124	75.698	76.693	-2.3527					39	19	3	0	0	0	0.028476	1	4229	4229		57.453	14.978	1	242770	+		41619	17123	34353	34377	45080	45080					0.045189830023673494
NWHKEKVA	8	Unmodified	_NWHKEKVA_					0	0	0		tr|A0A553SFW3|A0A553SFW3_NIACIUncharacterizedproteinYhaNAAAdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09590PE=4SV=1	tr|A0A553SFW3|A0A553SFW3_NIACIUncharacterizedproteinYhaNAAAdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09590PE=4SV=1	tr|A0A553SFW3|A0A553SFW3_NIACIUncharacterizedproteinYhaNAAAdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09590PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	506.2744445800781	2	506.272158	1010.52976	1.7132	0.00086734	1.5295	0.00077434	3.2427	0.0016417	506.2727467608177	54.771	2.6321	51.6	50.779	53.411	-3.1715					173	88	3	0	0	0	0.73938	1	1486	1486		31.955	9.995	1	154000			41620	33084	34354	34378	45081	45081					0.02492009365892045
NWLSHPLEGF	10	Unmodified	_NWLSHPLEGF_					0	0	0			REV__ENST00000605866.5_1_2:98284495-98288057:+|nuORF	REV__ENST00000605866.5_1_2:98284495-98288057:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	600.2954711914062	2	600.29583	1198.57711	-0.97847	-0.00058737	0.69717	0.00041851	-0.2813	-0.00016886	600.2960236833461	115.38	0.93885	115.26	115	115.94	-0.11777					48	18	4	0	0	0	0.6104	1	11004	11004		40.778	0	1	115790	+		41621	28071	34355	34379	45082	45082					-0.014237561537584043
NWPARPPE	8	Unmodified	_NWPARPPE_					0	0	0			REV__nc|ENSG00000119596|P49750-3|YLPM1	REV__nc|ENSG00000119596|P49750-3|YLPM1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.318115234375	2	483.743234	965.471915	-0.0065626	-3.1746E-06	3.014	0.001458	3.0074	0.0014548	483.7444108038299	116.29	0.54655	114.92	114.65	115.19	-1.3645					16	10	2	0	0	0	0.028476	1	10834	10834		45.952	26.592	1	11282	+		41622	18452	34356	34380	45083	45083					-0.012202525595284897
NWPARPPE	8	Unmodified	_NWPARPPE_					0	0	0			REV__nc|ENSG00000119596|P49750-3|YLPM1	REV__nc|ENSG00000119596|P49750-3|YLPM1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	483.743234	965.471915	1.1056	0.00053482	3.4252	0.0016569	4.5308	0.0021917	483.7430141462815	115.09	0.84164	115.09	114.74	115.58	0	0.0063278	-9.8492E-05	NaN	45.952	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94212	+		41623	18452	34356	34380							-0.012202525595284897
NWPARPPE	8	Unmodified	_NWPARPPE_					0	0	0			REV__nc|ENSG00000119596|P49750-3|YLPM1	REV__nc|ENSG00000119596|P49750-3|YLPM1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	483.743234	965.471915	-0.5576	-0.00026974	3.8807	0.0018773	3.3231	0.0016075	483.7450691971854	115.35	0.64172	115.24	114.8	115.44	-0.11777	0.15404	0.00034223	NaN	45.952	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8123.7	+		41624	18452	34356	34380							-0.012202525595284897
NWPSRPYLF	9	Unmodified	_NWPSRPYLF_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	OvCa99_classI_Rep5	1	590.3015747070312	2	590.300916	1178.58728	2.3809	0.0014054	-0.33268	-0.00019638	2.0482	0.0012091	590.3005400859402	113.45	0.952	113.45	113.06	114.01	0					88	22	5	0	0	0	0.2422	2	12941	12916;12941		69.628	15.523	1	3162300			41625	3897	34357	34381	45084;45085	45085					0.005128515714659443
NWRRKLRWPR	10	Unmodified	_NWRRKLRWPR_					0	0	0			REV__ENST00000505606.6_1_5:43121886-43122210:+|nuORF	REV__ENST00000505606.6_1_5:43121886-43122210:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	489.9592590332031	3	489.956727	1466.84835	1.2339	0.00060458	3.8587	0.0018906	5.0927	0.0024952	489.9585825409476	30.218	0.74082	27.508	27.36	28.1	-2.7097					36	14	3	0	0	0	0.86233	1	810	810		11.097	3.2922	1	68684	+		41626	26878	34358	34382	45086	45086					0.13360276061848708
NWRRKRRWKRD	11	Unmodified	_NWRRKRRWKRD_					0	0	0			REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF	REV__ENST00000553345.5_1_20:31020694-31021097:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.7701416015625	3	552.985457	1655.93454	2.5381	0.0014035	-2.0739	-0.0011468	0.46419	0.00025669	553.3179581235086	75.589	0.50521	75.589	75.369	75.874	0					16	12	2	0	0	0	0.026562	1	7534	7534		0.37141	0.37141	1	661130	+		41627	27511	34359	34383	45087	45087					0.1328123589655661
NWRYLVID	8	Unmodified	_NWRYLVID_					0	0	0		ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-SECPEP	OvCa9_classI_Rep2	2	538.8258056640625	2	539.787641	1077.56073	0.0068584	3.7021E-06	1.8077	0.0009758	1.8146	0.0009795	539.7884508821713	92.108	0.63025	90.872	90.537	91.167	-1.2355					22	8	3	0	0	0	0.028476	1	8158	8158		44.117	0	1	377950			41628	5663	34360	34384	45088	45088					0.02505162680131434
NWVLAVGDP	9	Unmodified	_NWVLAVGDP_					0	0	0			REV__nc|ENSG00000158560|O14576-3|DYNC1I1	REV__nc|ENSG00000158560|O14576-3|DYNC1I1	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.2978820800781	2	485.753267	969.491981	1.4698	0.00071397	1.0495	0.0005098	2.5193	0.0012238	485.7534646179057	114.99	1.6744	114.99	114.7	116.37	0					51	35	2	0	0	0	0.027448	1	13120	13120		53.351	10.955	1	106630	+		41629	20573	34361	34385	45089	45089					0.0060149838041070325
NWWKYEFGL	9	Unmodified	_NWWKYEFGL_					0	0	0			REV__ENSG00000164659|ENST00000450689|ELAPOR2	REV__ENSG00000164659|ENST00000450689|ELAPOR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	413.8944396972656	3	414.869591	1241.58694	0.54429	0.00022581	2.0696	0.00085862	2.6139	0.0010844	414.8702280319601	30.077	0.40023	30.077	29.885	30.285	0					11	7	2	0	0	0	0.027462	1	1118	1118		19.104	12.444	1	27852	+		41630	21010	34362	34386	45090	45090					-0.024185681483913868
NYAQVFNKL	9	Unmodified	_NYAQVFNKL_					0	0	0		ENSG00000136261|ENST00000258761|BZW2;nc|ENSG00000136261|Q9Y6E2-2|BZW2;ENST00000480517.5_1_7:16705068-16725727:+|nuORF	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-MSMS	OvCa99_classI_Rep5	1	548.7930297851562	2	548.792924	1095.57129	2.4007	0.0013175	-0.47131	-0.00025865	1.9294	0.0010588	548.7924795011398	94.495	0.59862	94.495	94.306	94.905	0					40	13	4	0	0	0	0.019428	1	10277	10277		147.69	83.486	1	4012900			41631	4478	34363	34387	45091	45091					0.027331453345595946
NYAQVLDKF	9	Unmodified	_NYAQVLDKF_					0	0	0		ASAP1|p.K992Qfs*25|1|0.06|ENSG00000153317|chr8:130060797-130060798|-/G|frameshift_variant;ENSG00000153317|ENST00000518721|ASAP1;nc|ENSG00000153317|Q9ULH1-2|ASAP1;ENST00000519169.5_1_8:131191508-131249207:-|nuORF	ASAP1|p.K992Qfs*25|1|0.06|ENSG00000153317|chr8:130060797-130060798|-/G|frameshift_variant	ASAP1|p.K992Qfs*25|1|0.06|ENSG00000153317|chr8:130060797-130060798|-/G|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	549.287109375	2	549.284931	1096.55531	2.0629	0.0011331	0.19051	0.00010464	2.2534	0.0012377	549.2849005442416	100.45	1.4198	100.45	100.11	101.53	0					80	33	4	0	0	0	0.0077394	2	11153	11124;11153		209.19	113.38	1	10858000			41632	118	34364	34388	45092;45093	45093					0.010894390976773138
NYAQVLDKF	9	Unmodified	_NYAQVLDKF_					0	0	0		ASAP1|p.K992Qfs*25|1|0.06|ENSG00000153317|chr8:130060797-130060798|-/G|frameshift_variant;ENSG00000153317|ENST00000518721|ASAP1;nc|ENSG00000153317|Q9ULH1-2|ASAP1;ENST00000519169.5_1_8:131191508-131249207:-|nuORF	ASAP1|p.K992Qfs*25|1|0.06|ENSG00000153317|chr8:130060797-130060798|-/G|frameshift_variant	ASAP1|p.K992Qfs*25|1|0.06|ENSG00000153317|chr8:130060797-130060798|-/G|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	549.284931	1096.55531	-0.78857	-0.00043315	-1.314	-0.00072177	-2.1026	-0.0011549	549.2839038639063	101.14	1.0897	100.38	99.873	100.96	-0.76401	-0.0038709	-0.001392	NaN	209.19	38	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57365			41633	118	34364	34388							0.010894390976773138
NYAQVLDKF	9	Unmodified	_NYAQVLDKF_					0	0	0		ASAP1|p.K992Qfs*25|1|0.06|ENSG00000153317|chr8:130060797-130060798|-/G|frameshift_variant;ENSG00000153317|ENST00000518721|ASAP1;nc|ENSG00000153317|Q9ULH1-2|ASAP1;ENST00000519169.5_1_8:131191508-131249207:-|nuORF	ASAP1|p.K992Qfs*25|1|0.06|ENSG00000153317|chr8:130060797-130060798|-/G|frameshift_variant	ASAP1|p.K992Qfs*25|1|0.06|ENSG00000153317|chr8:130060797-130060798|-/G|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	549.284931	1096.55531	-1.2531	-0.00068832	-0.11484	-6.3082E-05	-1.368	-0.0007514	549.284768098217	101.89	1.0451	100.37	100.11	101.15	-1.5211	-0.013808	-7.4597E-05	NaN	209.19	46	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81565			41634	118	34364	34388							0.010894390976773138
NYAQVLDKF	9	Unmodified	_NYAQVLDKF_					0	0	0		ASAP1|p.K992Qfs*25|1|0.06|ENSG00000153317|chr8:130060797-130060798|-/G|frameshift_variant;ENSG00000153317|ENST00000518721|ASAP1;nc|ENSG00000153317|Q9ULH1-2|ASAP1;ENST00000519169.5_1_8:131191508-131249207:-|nuORF	ASAP1|p.K992Qfs*25|1|0.06|ENSG00000153317|chr8:130060797-130060798|-/G|frameshift_variant	ASAP1|p.K992Qfs*25|1|0.06|ENSG00000153317|chr8:130060797-130060798|-/G|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	549.284931	1096.55531	-0.2437	-0.00013386	-1.0348	-0.00056838	-1.2785	-0.00070224	549.2842999818238	102.53	1.1042	100.33	99.727	100.83	-2.1994	-0.051361	-0.0010852	NaN	209.19	43	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64688			41635	118	34364	34388							0.010894390976773138
NYARGHYTI	9	Unmodified	_NYARGHYTI_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;ENST00000530835.1_1_11:90015825-90016947:+|nuORF;ENST00000462806.5_1_2:220116196-220118580:-|nuORF;TUBA1B|p.G111Afs*71|1|0.21|ENSG00000123416|chr12:49129285-49129285|C/-|frameshift_variant;ENST00000548363.1_1_12:49580068-49582762:-|nuORF;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;TUBA1A|p.R264Pfs*25|1|0.06|ENSG00000167552|chr12:49185575-49185575|C/-|frameshift_variant;ENSG00000167553|ENST00000301072|TUBA1C;ENST00000550254.1_1_12:49580068-49580335:-|nuORF	ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C;ENST00000550254.1_1_12:49580068-49580335:-|nuORF	ENSG00000167552|ENST00000301071|TUBA1A	MULTI-MSMS	OvCa99_classI_Rep5	1	547.773193359375	2	547.772522	1093.53049	-0.56935	-0.00031187	-0.16529	-9.0543E-05	-0.73464	-0.00040241	547.772429664708	48.433	2.9193	48.433	48.116	51.036	0					172	66	6	0	0	0	0.015391	3	3568	3540;3568;3592		152.47	72.758	1	29990000			41636	3593;6805;6806;13583	34365	34389	45094;45095;45096	45095					-0.012531959850548446
NYARPPTVILE	11	Unmodified	_NYARPPTVILE_					0	0	0		ENSG00000061656|ENST00000374273|SPAG4	ENSG00000061656|ENST00000374273|SPAG4	ENSG00000061656|ENST00000374273|SPAG4	MSMS	OvCa99_classI_Rep5	1	636.8546142578125	2	636.85097	1271.68739	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.08	1	116.08	115.58	116.58	0								0	0	0	0.0377	1	13273	13273		80.455	3.6805	1				41637	1271	34366	34390	45097	45097					0.06241044114631222
NYASDSSEIL	10	Unmodified	_NYASDSSEIL_					0	0	0		ENST00000528986.1_1_11:121971359-121971719:-|nuORF	ENST00000528986.1_1_11:121971359-121971719:-|nuORF	ENST00000528986.1_1_11:121971359-121971719:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.3385620117188	2	549.751118	1097.48768	2.022	0.0011116	-0.11213	-6.1646E-05	1.9098	0.0010499	550.2524594994826	113.02	0.45568	113.02	112.88	113.33	0					11	9	2	0	0	0	0.026679	1	12858	12858		93.195	27.392	1	43310			41638	13266	34367	34391	45098	45098					-0.057160556237931814
NYAWVYYHL	9	Unmodified	_NYAWVYYHL_					0	0	0		ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	ENSG00000119917|ENST00000371818|IFIT3	MULTI-MSMS	OvCa99_classI_Rep5	1	614.7948608398438	2	614.792924	1227.57129	1.3394	0.00082347	0.57654	0.00035445	1.916	0.0011779	614.793018973603	119.26	1.1784	119.26	119.01	120.18	0					66	27	4	0	0	0	0.0096355	2	13692	13671;13692		170.31	112.08	1	2965700			41639	3403	34368	34392	45099;45100	45100					-0.03338854665435065
NYDKVEKLF	9	Unmodified	_NYDKVEKLF_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3;CSTF3|p.W101Sfs*10|1|0.17|ENSG00000176102|chr11:33107947-33107957|ATAACACTTCC/-|frameshift_variant	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	OvCa99_classI_Rep5	1	578.3079223632812	2	578.305864	1154.59717	2.084	0.0012052	-0.32688	-0.00018904	1.7571	0.0010161	578.3055098346313	80.289	0.79626	80.289	80.031	80.827	0					34	18	4	0	0	0	0.066102	1	8221	8221		109.48	29.539	1	1786700			41640	7583	34369	34393	45101	45101					0.02605994786199517
NYDQKSQEV	9	Unmodified	_NYDQKSQEV_					0	0	0		nc|ENSG00000168280|O60282-2|KIF5C;ENSG00000168280|ENST00000435030|KIF5C;ENST00000460377.1_2:149835462-149853923:+|nuORF;ENSG00000155980|ENST00000455537|KIF5A;ENSG00000170759|ENST00000302418|KIF5B	nc|ENSG00000168280|O60282-2|KIF5C;ENSG00000170759|ENST00000302418|KIF5B	nc|ENSG00000168280|O60282-2|KIF5C	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.7703857421875	2	555.756735	1109.49892	2.4819	0.0013793	3.1687	0.001761	5.6506	0.0031403	555.7585532768383	102.91	0.34171	102.91	102.63	102.98	0					11	7	2	0	0	0	0.027462	1	11452	11452		34.173	12.47	1	185000			41641	6886;7132	34370	34394	45102	45102					-0.05145233529651705
NYFPFQWKL	9	Unmodified	_NYFPFQWKL_					0	0	0		ENST00000519705.1_1_8:43052051-43054709:+|nuORF;ENSG00000165102|ENST00000379644|HGSNAT;nc|ENSG00000165102|Q68CP4|HGSNAT	ENST00000519705.1_1_8:43052051-43054709:+|nuORF	ENST00000519705.1_1_8:43052051-43054709:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	621.8203735351562	2	621.818941	1241.62333	0.52488	0.00032638	1.8047	0.0011222	2.3296	0.0014486	621.8200447843874	140.05	1.909	140.05	139.17	141.08	0					91	39	4	0	0	0	0.068524	2	16345	16345;16368		108.09	36.792	1	926720			41642	6519	34371	34395	45103;45104	45103					0.01218308748320851
NYGAYINDF	9	Unmodified	_NYGAYINDF_					0	0	0		nc|ENSG00000170266|P16278-2|GLB1;nc|ENSG00000170266|P16278-3|GLB1;nc|ENSG00000170266|P16278|GLB1;ENSG00000170266|ENST00000307363|GLB1	nc|ENSG00000170266|P16278-2|GLB1	nc|ENSG00000170266|P16278-2|GLB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.736083984375	2	538.737814	1075.46108	-1.0049	-0.00054138	-3.2242	-0.001737	-4.2291	-0.0022784	538.735984542756	62.396	2.4131	58.938	58.29	60.703	-3.4577					113	49	4	0	0	0	0.074342	2	4328	4328;4352		104.75	17.05	1	819380			41643	7087	34372	34396	45105;45106	45105					-0.0736369972448756
NYGAYINDF	9	Unmodified	_NYGAYINDF_					0	0	0		nc|ENSG00000170266|P16278-2|GLB1;nc|ENSG00000170266|P16278-3|GLB1;nc|ENSG00000170266|P16278|GLB1;ENSG00000170266|ENST00000307363|GLB1	nc|ENSG00000170266|P16278-2|GLB1	nc|ENSG00000170266|P16278-2|GLB1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	538.737814	1075.46108	-2.2485	-0.0012113	-1.7668	-0.00095185	-4.0153	-0.0021632	538.7367203622347	61.855	1.8443	59.096	58.568	60.412	-2.7593	0.078909	0.00075855	NaN	104.75	72	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164240			41644	7087	34372	34396							-0.0736369972448756
NYGCLDCTD	9	Carbamidomethyl (C)	_NYGC(Carbamidomethyl (C))LDCTD_	NYGC(0.858)LDC(0.142)TD		NYGC(7.8)LDC(-7.8)TD		0	1	0			REV__ENST00000568469.5_1_16:19049201-19056398:+|nuORF	REV__ENST00000568469.5_1_16:19049201-19056398:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.760986328125	2	530.689149	1059.36375	-1.015	-0.00053867	0.92841	0.0004927	-0.086627	-4.5972E-05	530.6894653690358	58.86	0.99937	55.468	55.101	56.1	-3.392					34	19	3	0	0	0	0.027295	1	3934	3934		74.255	29.878	2	74151	+		41645	21547	34373	34397	45107	45107	240				-0.16356172987298123
NYGRVFSEW	9	Unmodified	_NYGRVFSEW_					0	0	0		ENST00000471751.5_1_3:125166625-125239024:-|nuORF;ENSG00000114520|ENST00000251775|SNX4;ENST00000473417.5_1_3:125188296-125239016:-|nuORF;nc|ENSG00000114520|O95219-2|SNX4	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	579.2737426757812	2	579.272355	1156.53016	1.5944	0.00092362	0.30827	0.00017857	1.9027	0.0011022	579.2725214835452	98.476	1.3642	98.476	98.206	99.57	0					83	32	4	0	0	0	0.014964	1	10842	10842		153.04	75.718	1	3794600			41646	3025	34374	34398	45108	45108					-0.04184615704912176
NYGTIKWFF	9	Unmodified	_NYGTIKWFF_					0	0	0		nc|ENSG00000089041|Q99572-5|P2RX7;nc|ENSG00000089041|Q99572-2|P2RX7;ENSG00000089041|ENST00000328963|P2RX7;nc|ENSG00000089041|Q99572-3|P2RX7;ENST00000539695.5_1_12:121570737-121600081:+|nuORF;P2RX7|p.V312Afs*7|1|0.1|ENSG00000089041|chr12:121175440-121175441|-/C|frameshift_variant	nc|ENSG00000089041|Q99572-5|P2RX7	nc|ENSG00000089041|Q99572-5|P2RX7	MULTI-MSMS	OvCa99_classI_Rep5	1	588.2990112304688	2	588.297842	1174.58113	1.1789	0.00069353	0.29262	0.00017215	1.4715	0.00086568	588.2977654720584	132.84	0.98082	132.84	132.46	133.44	0					55	20	4	0	0	0	0.094616	2	15436	15436;15461		98.629	45.278	1	615260			41647	1804	34375	34399	45109;45110	45109					0.0008233333992393455
NYGWIIRYL	9	Unmodified	_NYGWIIRYL_					0	0	0		ENSG00000198727|ENST00000361789|MT-CYB	ENSG00000198727|ENST00000361789|MT-CYB	ENSG00000198727|ENST00000361789|MT-CYB	MULTI-SECPEP	OvCa99_classI_Rep5	1	599.7513427734375	2	599.324391	1196.63423	1.7728	0.0010625	1.1458	0.00068672	2.9186	0.0017492	599.3248993114073	138.21	0.80501	138.21	137.93	138.74	0					35	16	3	0	0	0	0.027426	1	16134	16134		76.774	20.053	1	188010			41648	8858	34376	34400	45111	45111					0.0437771112262908
NYHDRVYK	8	Unmodified	_NYHDRVYK_					0	0	0		tr|A0A553SIW1|A0A553SIW1_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_15625PE=4SV=1	tr|A0A553SIW1|A0A553SIW1_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_15625PE=4SV=1	tr|A0A553SIW1|A0A553SIW1_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_15625PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	547.7725830078125	2	547.772522	1093.53049	-0.56935	-0.00031187	-0.16529	-9.0543E-05	-0.73464	-0.00040241	547.772429664708	48.433	2.9193	48.433	48.116	51.036	0					172	66	6	0	0	0	0.59148	1	3617	3617		65.803	9.0821	1	29990000			41649	33432	34377	34401	45112	45112					-0.012531959850548446
NYIAVDIGALF	11	Unmodified	_NYIAVDIGALF_					0	0	0			REV__tr|A0A7D6W3T8|A0A7D6W3T8_9CLOT4-hydroxy-tetrahydrodipicolinatesynthaseOS=ClostridiumintestinaleOX=36845GN=dapAPE=3SV=1	REV__tr|A0A7D6W3T8|A0A7D6W3T8_9CLOT4-hydroxy-tetrahydrodipicolinatesynthaseOS=ClostridiumintestinaleOX=36845GN=dapAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	598.821044921875	2	598.321514	1194.62847	0.46086	0.00027574	0.81495	0.0004876	1.2758	0.00076334	598.3219641700292	129.96	0.69072	129.73	129.42	130.11	-0.22696					29	13	3	0	0	0	0.71789	1	12757	12757		23.523	0.48021	1	30934	+		41650	31923	34378	34402	45113	45113					0.038945678202935596
NYIDKVRFL	9	Unmodified	_NYIDKVRFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa99_classI_Rep5	1	584.330810546875	2	584.329673	1166.64479	1.8557	0.0010843	-0.65761	-0.00038426	1.1981	0.00070009	584.3294830692238	95.329	3.6901	95.329	94.475	98.165	0					267	86	7	0	0	0	0.0069927	11	10468	10379;10408;10438;10468;10492;10522;10550;10579;10634;10662;10692		190.52	74.441	1	209970000			41651	1049	34379	34403	45114;45115;45116;45117;45118;45119;45120;45121;45122;45123;45124	45117					0.06813693777053231
NYIEFTRIL	9	Unmodified	_NYIEFTRIL_					0	0	0		ENSG00000101608|ENST00000217652|MYL12A;ENSG00000118680|ENST00000237500|MYL12B	ENSG00000101608|ENST00000217652|MYL12A	ENSG00000101608|ENST00000217652|MYL12A	MULTI-MSMS	OvCa99_classI_Rep5	1	584.8223876953125	2	584.821681	1167.62881	1.1243	0.00065751	1.0883	0.00063644	2.2126	0.0012939	584.8221466707196	123.23	0.92691	123.23	122.86	123.79	0					49	19	4	0	0	0	0.07097	1	14215	14215		106.68	13.54	1	1003700			41652	2190	34380	34404	45125	45125					0.05169987540148213
NYIFDMGFF	9	Unmodified	_NYIFDMGFF_					0	0	0			REV__tr|A0A553SLJ0|A0A553SLJ0_NIACIPatatinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20720PE=4SV=1	REV__tr|A0A553SLJ0|A0A553SLJ0_NIACIPatatinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20720PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.783447265625	2	577.254785	1152.49502	0.96355	0.00055621	-3.7626	-0.002172	-2.799	-0.0016157	577.2525263748803	109.41	0.75396	109.41	109.15	109.9	0					25	16	2	0	0	0	0.027441	1	12458	12458		45.952	0	1	656820	+		41653	30227	34381	34405	45126	45126					-0.07512994557055208
NYIGISLRI	9	Unmodified	_NYIGISLRI_					0	0	0		ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	ENSG00000138246|ENST00000260818|DNAJC13	MULTI-MSMS	OvCa99_classI_Rep5	1	524.81298828125	2	524.811116	1047.60768	1.5557	0.00081646	-0.091993	-4.8279E-05	1.4637	0.00076818	524.8109920290574	117.3	1.2543	117.3	117	118.25	0					47	26	3	0	0	0	0.45842	1	13456	13456		46.457	10.838	1	495220			41654	4670	34382	34406	45127	45127					0.08578022231290561
NYIGLINRI	9	Unmodified	_NYIGLINRI_					0	0	0		EIF2AK2|p.F368Pfs*12|1|0.04|ENSG00000055332|chr2:37120106-37120107|-/CACAGGGAATAGGGAATGGAGGAAAGGC|frameshift_variant;ENSG00000055332|ENST00000233057|EIF2AK2;ENST00000496059.1_1_2:37364124-37368826:-|nuORF;nc|ENSG00000055332|P19525-2|EIF2AK2	EIF2AK2|p.F368Pfs*12|1|0.04|ENSG00000055332|chr2:37120106-37120107|-/CACAGGGAATAGGGAATGGAGGAAAGGC|frameshift_variant	EIF2AK2|p.F368Pfs*12|1|0.04|ENSG00000055332|chr2:37120106-37120107|-/CACAGGGAATAGGGAATGGAGGAAAGGC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	538.3174438476562	2	538.316566	1074.61858	2.6595	0.0014317	-1.2234	-0.00065858	1.4361	0.00077309	538.3156955580063	107.88	1.6217	107.88	107.4	109.02	0					104	37	5	0	0	0	0.074342	1	12172	12172		104.75	22.506	1	37581000			41655	787	34383	34407	45128	45128					0.08425424605570697
NYIHMHLF	8	Unmodified	_NYIHMHLF_					0	0	0		ENSG00000160801|ENST00000449590|PTH1R;ENST00000446673.5_1_3:42544163-42573332:+|nuORF;nc|ENSG00000114812|P32241-4|VIPR1;nc|ENSG00000114812|P32241-5|VIPR1;chr2:208360237-208428201|350|57.39|0.52|6.79|+|ENST00000617735|PTH2R,PTH2R;nc|ENSG00000114812|P32241-2|VIPR1;ENSG00000144407|ENST00000272847|PTH2R;ENSG00000080293|ENST00000019103|SCTR;ENSG00000114812|ENST00000325123|VIPR1	ENSG00000160801|ENST00000449590|PTH1R;ENSG00000080293|ENST00000019103|SCTR;ENSG00000114812|ENST00000325123|VIPR1	ENSG00000160801|ENST00000449590|PTH1R	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.3182983398438	2	537.763112	1073.51167	2.0874	0.0011225	3.5279	0.0018972	5.6153	0.0030197	537.7650285792062	108.48	0.39027	108.48	108.32	108.71	0					14	8	2	0	0	0	0.028476	1	12287	12287		65.897	33.085	1	93872			41656	6094;1632;3044	34384	34408	45129	45129					-0.022144488804769935
NYIKDLNIL	9	Unmodified	_NYIKDLNIL_					0	0	0		ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	MULTI-MSMS	OvCa99_classI_Rep5	1	553.3204956054688	2	553.316232	1104.61791	1.875	0.0010375	-0.15027	-8.3144E-05	1.7248	0.00095434	553.3161147147734	112.68	1.2684	112.68	112.39	113.66	0					78	29	4	0	0	0	0.033166	2	12844	12820;12844		132.76	15.854	1	8263400			41657	4615	34385	34409	45130;45131	45131					0.06978585165848017
NYILIFGKI	9	Unmodified	_NYILIFGKI_					0	0	0		tr|A0A7D7A192|A0A7D7A192_9CLOTProbablemultidrugresistanceproteinNorMOS=ClostridiumintestinaleOX=36845GN=HZF06_14300PE=4SV=1	tr|A0A7D7A192|A0A7D7A192_9CLOTProbablemultidrugresistanceproteinNorMOS=ClostridiumintestinaleOX=36845GN=HZF06_14300PE=4SV=1	tr|A0A7D7A192|A0A7D7A192_9CLOTProbablemultidrugresistanceproteinNorMOS=ClostridiumintestinaleOX=36845GN=HZF06_14300PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	540.8226318359375	2	540.826235	1079.63792	-4.8647	-0.0026309	1.1122	0.00060149	-3.7525	-0.0020295	540.8266722246311	155.61	0.48663	155.38	155.16	155.64	-0.22696					29	17	2	0	0	0	0.62352	1	15861	15861		29.15	3.6994	1	25176			41658	36030	34386	34410	45132	45132					0.10128380896458111
NYIMKIHNF	9	Unmodified	_NYIMKIHNF_					0	0	0		ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	ENSG00000101126|ENST00000621696|ADNP	MULTI-MSMS	OvCa99_classI_Rep5	1	590.2955932617188	2	590.302601	1178.59065	2.166	0.0012786	0.081679	4.8215E-05	2.2477	0.0013268	590.3024906777238	79.818	1.0298	79.818	79.585	80.615	0					60	24	4	0	0	0	0.079296	1	8180	8180		102.77	36.97	1	3019800			41659	2139	34387	34411	45133	45133					0.008497783538132353
NYIPRFWTF	9	Unmodified	_NYIPRFWTF_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MSMS	OvCa99_classI_Rep5	1	622.3181762695312	2	622.316566	1242.61858	1.4438	0.00089851	0.3351	0.00020854	1.7789	0.001107	622.3168346793844	135.66	4.4379	135.66	135.27	139.7	0					226	93	6	0	0	0	0.0094524	7	15809	15783;15786;15809;15833;15858;15881;15930		171.38	86.469	1	21359000			41660	1691	34388	34412	45134;45135;45136;45137;45138;45139;45140	45136					0.006974246055506228
NYIRITSEI	9	Unmodified	_NYIRITSEI_					0	0	0		ENSG00000089876|ENST00000284690|DHX32;nc|ENSG00000089876|Q7L7V1-2|DHX32	ENSG00000089876|ENST00000284690|DHX32	ENSG00000089876|ENST00000284690|DHX32	MULTI-MSMS	OvCa99_classI_Rep5	1	554.8104248046875	2	554.803488	1107.59242	1.7877	0.00099183	0.48977	0.00027173	2.2775	0.0012636	554.8036717832437	92.45	0.75189	92.45	92.174	92.926	0					32	17	2	0	0	0	0.070405	1	9989	9989		107.01	21.847	1	2252900			41661	1829	34389	34413	45141	45141					0.0429311064342528
NYISGIQTI	9	Unmodified	_NYISGIQTI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OvCa99_classI_Rep5	1	504.7727966308594	2	504.771657	1007.52876	1.8132	0.00091524	0.21792	0.00011	2.0311	0.0010252	504.77170034212156	110.95	1.1179	110.95	110.67	111.79	0					55	24	4	0	0	0	0.0086488	2	12611	12588;12611		176.09	42.274	1	2734300			41662	8533	34390	34414	45142;45143	45143					0.025297502063381216
NYIWALTQTL	10	Unmodified	_NYIWALTQTL_					0	0	0		ENSG00000122859|ENST00000242462|NEUROG3	ENSG00000122859|ENST00000242462|NEUROG3	ENSG00000122859|ENST00000242462|NEUROG3	MULTI-MSMS	OvCa99_classI_Rep5	1	611.8262329101562	2	611.826963	1221.63937	-0.38217	-0.00023382	-3.2433	-0.0019843	-3.6255	-0.0022182	611.8249818650438	51.809	1.6702	51.809	51.544	53.214	0					117	38	5	0	0	0	0.37132	1	4069	4069		60.118	3.486	1	23375000			41663	3560	34391	34415	45144	45144					0.03741970194550959
NYIYVKFATI	10	Unmodified	_NYIYVKFATI_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	OvCa99_classI_Rep5	1	617.3196411132812	2	616.339707	1230.66486	1.2477	0.00076903	-3.3868	-0.0020874	-2.1391	-0.0013184	616.3377096807826	130.96	0.47479	130.96	130.72	131.2	0					15	9	2	0	0	0	0.027028	1	15205	15205		39.253	0	1	96638			41664	8571	34392	34416	45145	45145					0.0587544471700312
NYKDLNGNVF	10	Unmodified	_NYKDLNGNVF_					0	0	0		nc|ENSG00000124783|P43307-2|SSR1;ENSG00000124783|ENST00000244763|SSR1	nc|ENSG00000124783|P43307-2|SSR1	nc|ENSG00000124783|P43307-2|SSR1	MULTI-MSMS	OvCa99_classI_Rep5	1	592.2922973632812	2	592.290745	1182.56694	1.8699	0.0011075	0.61139	0.00036212	2.4813	0.0014696	592.2910714539337	83.755	0.75864	83.755	83.545	84.303	0					41	17	4	0	0	0	0.32141	1	8724	8724		78.264	30.606	1	1642400			41665	3679	34393	34417	45146	45146					-0.017043638790028126
NYKKFYEQF	9	Unmodified	_NYKKFYEQF_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000554401.1_1_14:102549349-102551760:-|nuORF	ENSG00000080824|ENST00000216281|HSP90AA1	ENSG00000080824|ENST00000216281|HSP90AA1	MULTI-MSMS	OvCa99_classI_Rep5	1	633.812744140625	2	633.811313	1265.60807	0.97318	0.00061681	-0.44093	-0.00027947	0.53225	0.00033734	633.8109645287719	74.096	3.4467	74.096	73.597	77.044	0					211	86	6	0	0	0	0.013371	5	7312	7285;7312;7342;7373;7403		158.07	78.362	1	43266000			41666	1643	34394	34418	45147;45148;45149;45150;45151	45148					-0.014106028395417525
NYKPLQVVTA	10	Unmodified	_NYKPLQVVTA_					0	0	0		HTR3A|p.M259Vfs*31|1|0.12|ENSG00000166736|chr11:113986586-113986587|-/GT|frameshift_variant;HTR3A|p.N269Qfs*25|2|0.07|ENSG00000166736|chr11:113986610-113986611|-/C|frameshift_variant;nc|ENSG00000166736|P46098-3|HTR3A;ENSG00000166736|ENST00000504030|HTR3A;nc|ENSG00000166736|P46098-4|HTR3A;nc|ENSG00000166736|P46098-2|HTR3A;nc|ENSG00000166736|P46098-5|HTR3A	HTR3A|p.M259Vfs*31|1|0.12|ENSG00000166736|chr11:113986586-113986587|-/GT|frameshift_variant	HTR3A|p.M259Vfs*31|1|0.12|ENSG00000166736|chr11:113986586-113986587|-/GT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.8515014648438	2	566.821681	1131.62881	2.5831	0.0014641	-0.71061	-0.00040279	1.8724	0.0010613	566.821316968477	86.065	1.0981	86.065	85.663	86.761	0					42	26	2	0	0	0	0.026867	1	9125	9125		42.864	5.0528	1	635800			41667	6705	34395	34419	45152	45152					0.06825987540150891
NYKPLQVVTA	10	Unmodified	_NYKPLQVVTA_					0	0	0		HTR3A|p.M259Vfs*31|1|0.12|ENSG00000166736|chr11:113986586-113986587|-/GT|frameshift_variant;HTR3A|p.N269Qfs*25|2|0.07|ENSG00000166736|chr11:113986610-113986611|-/C|frameshift_variant;nc|ENSG00000166736|P46098-3|HTR3A;ENSG00000166736|ENST00000504030|HTR3A;nc|ENSG00000166736|P46098-4|HTR3A;nc|ENSG00000166736|P46098-2|HTR3A;nc|ENSG00000166736|P46098-5|HTR3A	HTR3A|p.M259Vfs*31|1|0.12|ENSG00000166736|chr11:113986586-113986587|-/GT|frameshift_variant	HTR3A|p.M259Vfs*31|1|0.12|ENSG00000166736|chr11:113986586-113986587|-/GT|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	566.821681	1131.62881	1.3647	0.00077352	2.2432	0.0012715	3.6078	0.002045	566.8227420562389	87.645	0.73573	86.214	85.99	86.726	-1.4311	0.074423	0.0024501	NaN	42.864	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20584			41668	6705	34395	34419							0.06825987540150891
NYKSHHLQL	9	Unmodified	_NYKSHHLQL_					0	0	0		ENSG00000095485|ENST00000354105|CWF19L1;nc|ENSG00000095485|Q69YN2-2|CWF19L1;nc|ENSG00000095485|Q69YN2-3|CWF19L1	ENSG00000095485|ENST00000354105|CWF19L1	ENSG00000095485|ENST00000354105|CWF19L1	MULTI-MSMS	OvCa99_classI_Rep5	1	570.301513671875	2	570.301447	1138.58834	-0.42235	-0.00024087	0.32477	0.00018521	-0.097587	-5.5654E-05	570.301492330789	40.549	0.72785	40.549	40.154	40.881	0					36	15	3	0	0	0	0.035142	1	2464	2464		131.03	48.791	1	1486500			41669	1930	34396	34420	45153	45153					0.024590659403884274
NYLAASIR	8	Unmodified	_NYLAASIR_					0	0	0		nc|ENSG00000148187|Q96E11-5|MRRF;nc|ENSG00000148187|Q96E11-6|MRRF;ENST00000373728.6_1_9:125027203-125047581:+|nuORF;nc|ENSG00000148187|Q96E11-4|MRRF;nc|ENSG00000148187|Q96E11-2|MRRF;nc|ENSG00000148187|Q96E11-8|MRRF;ENSG00000148187|ENST00000344641|MRRF;ENST00000435941.1_1_X:122250823-122251621:-|nuORF	nc|ENSG00000148187|Q96E11-5|MRRF	nc|ENSG00000148187|Q96E11-5|MRRF	MULTI-MSMS	OvCa99_classI_Rep5	1	454.25311279296875	2	454.253434	906.492316	-0.80484	-0.0003656	0.82892	0.00037654	0.024076	1.0937E-05	454.25367021724	43.598	0.73076	43.598	43.393	44.123	0					46	16	4	0	0	0	0.38598	1	2890	2890		90.777	11.326	1	1667000			41670	5390	34397	34421	45154	45154					0.03532918100290772
NYLGSMLIK	9	Unmodified	_NYLGSMLIK_					0	0	0		ENSG00000064999|ENST00000360359|ANKS1A	ENSG00000064999|ENST00000360359|ANKS1A	ENSG00000064999|ENST00000360359|ANKS1A	MULTI-MSMS	OvCa9_classI_Rep2	2	519.7880859375	2	519.786253	1037.55795	1.7462	0.00090765	3.13	0.0016269	4.8762	0.0025346	519.7877072315993	28.989	1.1633	26.279	25.999	27.162	-2.7097					53	24	3	0	0	0	0.46377	1	650	650		45.952	3.5558	1	85752			41671	1311	34398	34422	45155	45155					0.040675712309621304
NYLNHWNHF	9	Unmodified	_NYLNHWNHF_					0	0	0		ENSG00000167363|ENST00000300784|FN3K	ENSG00000167363|ENST00000300784|FN3K	ENSG00000167363|ENST00000300784|FN3K	MULTI-MSMS	OvCa99_classI_Rep5	1	622.7855834960938	2	622.783422	1243.55229	0.56707	0.00035316	1.3289	0.0008276	1.8959	0.0011808	622.7841800120542	81.394	1.142	81.394	81.08	82.222	0					68	27	4	0	0	0	0.0083719	2	8375	8375;8408		177.71	87.106	1	5567400			41672	6784	34399	34423	45156;45157	45156					-0.05974391236486554
NYLPKFNKKL	10	Unmodified	_NYLPKFNKKL_					0	0	0		tr|A0A553SRD6|A0A553SRD6_NIACIExtracellularsolute-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_00730PE=4SV=1	tr|A0A553SRD6|A0A553SRD6_NIACIExtracellularsolute-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_00730PE=4SV=1	tr|A0A553SRD6|A0A553SRD6_NIACIExtracellularsolute-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_00730PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	632.3310546875	2	632.874248	1263.73394	-0.050251	-3.1803E-05	-0.15011	-9.5002E-05	-0.20036	-0.0001268	633.3757511311946	116.82	1.0402	115.46	115.04	116.08	-1.3645					32	19	2	0	0	0	0.026849	1	10924	10924		49.442	0	1	22225			41673	34252	34400	34424	45158	45158					0.11262528736574495
NYLPRGYSD	9	Unmodified	_NYLPRGYSD_					0	0	0			REV__nc|ENSG00000068885|Q9P2H3-2|IFT80	REV__nc|ENSG00000068885|Q9P2H3-2|IFT80	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.2886962890625	2	542.756538	1083.49852	0.085789	4.6562E-05	-1.9368	-0.0010512	-1.851	-0.0010046	542.7553518960802	71.799	0.41123	71.799	71.466	71.877	0					11	9	2	0	0	0	0.027453	1	6937	6937		54.776	3.4409	1	103160	+		41674	16861	34401	34425	45159	45159					-0.0398860845884883
NYLRGPHS	8	Unmodified	_NYLRGPHS_					0	0	0			REV__ENST00000468619.5_1_11:70515690-70672680:-|nuORF	REV__ENST00000468619.5_1_11:70515690-70672680:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.3017578125	2	472.240858	942.467164	2.6406	0.001247	-1.4054	-0.00066371	1.2351	0.00058328	472.2400929640632	88.793	0.53115	88.793	88.551	89.082	0					29	12	3	0	0	0	0.028476	1	9445	9445		47.916	22.342	1	1591000	+		41675	26229	34402	34426	45160	45160					-0.006371367022893537
NYLRIRHY	8	Unmodified	_NYLRIRHY_					0	0	0			REV__ENST00000487948.1_1_8:25167987-25174722:+|nuORF	REV__ENST00000487948.1_1_8:25167987-25174722:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	567.81103515625	2	567.811982	1133.60941	0.22441	0.00012742	-1.6854	-0.000957	-1.461	-0.00082958	567.8109861589273	113.4	1.1856	113.27	112.82	114.01	-0.12174					56	23	3	0	0	0	0.74971	1	10786	10786		26.796	0.10319	1	241960	+		41676	26613	34403	34427	45161	45161					0.04795076039886226
NYLSHHLTI	9	Unmodified	_NYLSHHLTI_					0	0	0		nc|ENSG00000172239|Q9H074-3|PAIP1;nc|ENSG00000172239|Q9H074-2|PAIP1;ENST00000447794.1_1_17:18553574-18554852:+|nuORF;ENSG00000172239|ENST00000306846|PAIP1;PAIP1-FBXO38|1|fusion;PAIP1-FBXO38|2|fusion;PAIP1-FBXO38|3|fusion	nc|ENSG00000172239|Q9H074-3|PAIP1	nc|ENSG00000172239|Q9H074-3|PAIP1	MULTI-MSMS	OvCa99_classI_Rep5	1	549.2925415039062	2	549.290548	1096.56654	0.082342	4.523E-05	0.14453	7.9387E-05	0.22687	0.00012462	549.2905906451689	73.769	1.4014	73.769	73.479	74.88	0					79	35	4	0	0	0	0.0094524	2	7240	7240;7270		171.38	83.688	1	20347000			41677	7280	34404	34428	45162;45163	45162					0.022122611917893664
NYLSIFRKF	9	Unmodified	_NYLSIFRKF_					0	0	0		ENSG00000014216|ENST00000279247|CAPN1;ENST00000528165.5_1_11:64977175-64978433:+|nuORF	ENSG00000014216|ENST00000279247|CAPN1	ENSG00000014216|ENST00000279247|CAPN1	MULTI-MSMS	OvCa99_classI_Rep5	1	594.3343505859375	2	594.332216	1186.64988	2.308	0.0013717	0.2504	0.00014882	2.5584	0.0015205	594.3322573890746	106.55	1.3758	106.55	106.23	107.6	0					62	31	4	0	0	0	0.014964	2	12010	11987;12010		153.04	44.512	1	5670600			41678	997	34405	34429	45164;45165	45165					0.06401997639636647
NYLTLIGRL	9	Unmodified	_NYLTLIGRL_					0	0	0			REV__ENSG00000197977|ENST00000354666|ELOVL2	REV__ENSG00000197977|ENST00000354666|ELOVL2	MULTI-MSMS	OvCa9_classI_Rep3	3	531.816162109375	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.55588	1	11465	11465		37.159	5.2042	1	178650	+		41679	22975	34406	34430	45166	45166					0.09498308748356976
NYLVPRLEL	9	Unmodified	_NYLVPRLEL_					0	0	0			REV__CON__P01030	REV__CON__P01030	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.8276977539062	2	558.824224	1115.63389	1.9377	0.0010828	-1.6903	-0.00094458	0.24739	0.00013825	558.8232419648524	96.826	1.5108	94.4	94.015	95.526	-2.4256					80	29	4	0	0	0	0.40818	1	8560	8560		51.193	11.94	1	470520	+	+	41680	16171	34407	34431	45167	45167					0.08070291402736984
NYLVPRLEL	9	Unmodified	_NYLVPRLEL_					0	0	0			REV__CON__P01030	REV__CON__P01030	MULTI-MATCH	OvCa9_classI_Rep2	2		2	558.824224	1115.63389	0.36945	0.00020646	-1.0707	-0.00059833	-0.70124	-0.00039187	558.8237082768655	95.369	1.4389	94.341	93.972	95.411	-1.0281	-0.054868	-0.00079567	NaN	51.193	79	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	365140	+	+	41681	16171	34407	34431							0.08070291402736984
NYLVPRLEL	9	Unmodified	_NYLVPRLEL_					0	0	0			REV__CON__P01030	REV__CON__P01030	MULTI-MATCH	OvCa9_classI_Rep3	3		2	558.824224	1115.63389	-1.2275	-0.00068597	1.0843	0.00060594	-0.14322	-8.0034E-05	558.8247989920263	96.275	2.0669	94.447	93.682	95.749	-1.8286	0.050553	0.0016129	NaN	51.193	100	40	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	487000	+	+	41682	16171	34407	34431							0.08070291402736984
NYLWEEMPY	9	Unmodified	_NYLWEEMPY_					0	0	0			REV__tr|A0A553SJH5|A0A553SJH5_NIACIAlpha/betafoldhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_16855PE=4SV=1	REV__tr|A0A553SJH5|A0A553SJH5_NIACIAlpha/betafoldhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_16855PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	622.7713623046875	2	622.768257	1243.52196	1.8923	0.0011784	3.2548	0.002027	5.1471	0.0032055	622.7699287161097	137.17	1.5791	137.17	136.77	138.35	0					63	33	3	0	0	0	0.49652	1	16008	16008		44.117	4.864	1	162890	+		41683	30007	34408	34432	45168	45168					-0.09005930736543633
NYLWEEMPY	9	Unmodified	_NYLWEEMPY_					0	0	0			REV__tr|A0A553SJH5|A0A553SJH5_NIACIAlpha/betafoldhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_16855PE=4SV=1	REV__tr|A0A553SJH5|A0A553SJH5_NIACIAlpha/betafoldhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_16855PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	622.3631591796875	2	622.768257	1243.52196	1.8923	0.0011784	3.2548	0.002027	5.1471	0.0032055	622.7699287161097	137.17	1.5791	137.17	136.77	138.35	0					63	33	3	0	0	0	0.027461	1	16144	16144		49.442	3.4896	1	162890	+		41684	30007	34408	34432	45169	45169					-0.09005930736543633
NYMFYYVK	8	Unmodified	_NYMFYYVK_					0	0	0			REV__ENST00000265729.6_1_7:87835648-87835780:-|nuORF	REV__ENST00000265729.6_1_7:87835648-87835780:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	564.2671508789062	2	564.265153	1126.51575	-0.4178	-0.00023575	3.6507	0.0020599	3.2329	0.0018242	564.2667106994597	28.365	0.44794	28.365	28.091	28.539	0					26	8	5	0	0	0	0.69415	1	924	924		44.531	2.1349	1	151850	+		41685	24034	34409	34433	45170	45170					-0.04244404177393335
NYNDVIKGF	9	Unmodified	_NYNDVIKGF_					0	0	0		tr|A0A7D6ZT77|A0A7D6ZT77_9CLOTMetalABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19035PE=4SV=1	tr|A0A7D6ZT77|A0A7D6ZT77_9CLOTMetalABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19035PE=4SV=1	tr|A0A7D6ZT77|A0A7D6ZT77_9CLOTMetalABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19035PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	535.2691040039062	2	535.269281	1068.52401	-0.74374	-0.0003981	-0.14818	-7.9315E-05	-0.89191	-0.00047741	535.2689283073013	26.185	0.59951	26.185	25.943	26.542	0					19	11	3	0	0	0	0.64427	1	661	661		26.693	2.1737	1	118440			41686	35749	34410	34434	45171	45171					-0.007511339364327796
NYNEKIYEL	9	Unmodified	_NYNEKIYEL_					0	0	0		nc|ENSG00000070010|Q92890-3|UFD1;ENST00000459854.5_1_22:19442175-19463025:-|nuORF;ENSG00000070010|ENST00000263202|UFD1;nc|ENSG00000070010|Q92890-1|UFD1;ENST00000466373.1_1_22:19439515-19452862:-|nuORF	nc|ENSG00000070010|Q92890-3|UFD1	nc|ENSG00000070010|Q92890-3|UFD1	MULTI-MSMS	OvCa99_classI_Rep5	1	593.2951049804688	2	593.292953	1184.57135	2.0819	0.0012352	0.18909	0.00011219	2.271	0.0013474	593.2928590685353	85.353	0.70335	85.353	85.046	85.75	0					36	16	3	0	0	0	0.2784	1	8956	8956		65.465	7.6541	1	2292100			41687	1414	34411	34435	45172	45172					-0.013548994561006111
NYNLLREFI	9	Unmodified	_NYNLLREFI_					0	0	0			REV__tr|A0A553SU43|A0A553SU43_NIACIFour-carbonacidsugarkinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_06260PE=3SV=1	REV__tr|A0A553SU43|A0A553SU43_NIACIFour-carbonacidsugarkinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_06260PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	591.3197021484375	2	591.319306	1180.62406	-0.17173	-0.00010155	-0.21873	-0.00012934	-0.39047	-0.00023089	591.319059362571	106.72	1.7217	105.45	105.11	106.83	-1.267					85	33	4	0	0	0	0.19758	1	7550	7550		76.774	0.60445	1	872590	+		41688	31036	34412	34436	45173	45173					0.040971033973846716
NYNNQSSNF	9	Unmodified	_NYNNQSSNF_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|429|217.16|0.0|24.37|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENSG00000224578|ENST00000565308|HNRNPA1L3;ENST00000432375.1_1_6:32293532-32293889:+|nuORF;ENST00000444886.1_1_9:128358610-128358904:+|nuORF;ENST00000411857.2_1_1:179425361-179425934:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	OvCa99_classI_Rep5	1	544.226806640625	2	544.225602	1086.43665	0.030805	1.6765E-05	-0.23017	-0.00012527	-0.19937	-0.0001085	544.2252657406116	57.218	0.60436	57.218	56.961	57.566	0					33	13	3	0	0	0	0.10502	1	4796	4796		95.815	48.158	1	1558900			41689	322	34413	34437	45174	45174					-0.10310959877983805
NYPCDMFEQL	10	Unmodified	_NYPCDMFEQL_					0	0	0			REV__nc|ENSG00000136720|O60243-2|HS6ST1	REV__nc|ENSG00000136720|O60243-2|HS6ST1	MULTI-MSMS	OvCa99_classI_Rep5	1	630.2612915039062	2	630.257199	1258.49985	1.4926	0.00094073	0.35535	0.00022396	1.848	0.0011647	630.2578641450569	150.12	1.0995	150.12	149.79	150.89	0					71	21	6	0	0	0	0.50873	1	17552	17552		53.089	10.225	1	2637900	+		41690	19401	34414	34438	45175	45175					-0.11906478476612392
NYPETLGRLLI	11	Unmodified	_NYPETLGRLLI_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;ENSG00000103184|ENST00000251170|SEC14L5	nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000103184|ENST00000251170|SEC14L5	nc|ENSG00000129657|Q92503-3|SEC14L1	MULTI-MSMS	OvCa99_classI_Rep5	1	644.8687133789062	2	644.86662	1287.71869	1.3704	0.00088372	1.1346	0.00073167	2.505	0.0016154	644.8668443058746	124.49	1.7979	124.49	124.15	125.95	0					116	41	5	0	0	0	1.8469E-08	3	14365	14344;14365;14390		195.57	80.079	1	10185000			41691	3941;2291	34415	34439	45176;45177;45178	45177					0.08633617148734629
NYPFLGLLLW	10	Unmodified	_NYPFLGLLLW_					0	0	0		ENST00000463680.5_1_9:3898613-3937138:-|nuORF	ENST00000463680.5_1_9:3898613-3937138:-|nuORF	ENST00000463680.5_1_9:3898613-3937138:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	618.34765625	2	618.344792	1234.67503	0.62914	0.00038902	-1.8203	-0.0011256	-1.1912	-0.00073657	618.3436177832162	132.16	1.3194	132.16	131.81	133.13	0					72	27	4	0	0	0	0.49049	1	15340	15340		55.504	9.5523	1	3166100			41692	12231	34416	34440	45179	45179					0.06708052442240842
NYPHFFLDF	9	Unmodified	_NYPHFFLDF_					0	0	0		ENSG00000197872|ENST00000381323|CYRIA	ENSG00000197872|ENST00000381323|CYRIA	ENSG00000197872|ENST00000381323|CYRIA	MULTI-MSMS	OvCa99_classI_Rep5	1	600.2808227539062	2	600.279649	1198.54475	0.82175	0.00049328	1.7721	0.0010637	2.5938	0.001557	600.2804490904834	141.31	0.95436	141.31	140.83	141.79	0					40	18	3	0	0	0	0.33652	2	16515	16490;16515		58.782	8.4985	1	413370			41693	8755	34417	34441	45180;45181	45181					-0.0465854355677493
NYPQAYPSEV	10	Unmodified	_NYPQAYPSEV_					0	0	0		ENSG00000182326|ENST00000360817|C1S;ENST00000543187.5_1_12:7168132-7170034:+|nuORF;ENST00000488701.1_1_12:7168132-7170034:+|nuORF	ENSG00000182326|ENST00000360817|C1S	ENSG00000182326|ENST00000360817|C1S	MULTI-MSMS	OvCa99_classI_Rep5	1	584.270751953125	2	584.269478	1166.5244	-0.10024	-5.857E-05	0.71926	0.00042024	0.61902	0.00036167	584.2697041894706	73.697	0.46268	73.697	73.52	73.983	0					22	11	3	0	0	0	0.45822	1	7241	7241		60.118	8.9256	1	2837000			41694	7994	34418	34442	45182	45182					-0.05219759007263747
NYQGHFHLF	9	Unmodified	_NYQGHFHLF_					0	0	0		ENST00000283632.4_1_2:86968058-86968091:+|nuORF	ENST00000283632.4_1_2:86968058-86968091:+|nuORF	ENST00000283632.4_1_2:86968058-86968091:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	581.773681640625	2	581.775065	1161.53558	2.1077	0.0012262	0.53768	0.00031281	2.6453	0.001539	581.7753225292454	86.206	2.3866	86.206	85.912	88.298	0					149	57	3	0	0	0	0.037679	3	9059	9059;9088;9119		128.82	71.363	1	27278000			41695	10062	34419	34443	45183;45184;45185	45183					-0.03872892122444682
NYQKRFQNL	9	Unmodified	_NYQKRFQNL_					0	0	0		nc|ENSG00000060491|Q9NZT2-2|OGFR;ENSG00000060491|ENST00000290291|OGFR	nc|ENSG00000060491|Q9NZT2-2|OGFR	nc|ENSG00000060491|Q9NZT2-2|OGFR	MULTI-MSMS	OvCa99_classI_Rep5	1	605.8212890625	2	605.820004	1209.62546	-0.43914	-0.00026604	0.0002988	1.8102E-07	-0.43884	-0.00026586	605.8200429563664	51.96	1.85	51.96	51.669	53.519	0					108	42	5	0	0	0	0.030815	2	4030	4030;4060		119.56	45.302	1	9935300			41696	1261	34420	34444	45186;45187	45186					0.02902737486147089
NYQNVVHKL	9	Unmodified	_NYQNVVHKL_					0	0	0		nc|ENSG00000146463|Q5VZL5-3|ZMYM4;ZMYM4|p.K1431Nfs*9|1|0.11|ENSG00000146463|chr1:35415698-35415698|G/-|frameshift_variant;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	MSMS	OvCa99_classI_Rep5	1	557.8047485351562	2	557.803823	1113.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.04	1	56.04	55.54	56.54	0								0	0	0	2.0518E-05	1	4624	4624		172.03	89.791	1				41697	5295	34421	34445	45188	45188					0.040839500831452824
NYQNVVHKL	9	Unmodified	_NYQNVVHKL_					0	0	0		nc|ENSG00000146463|Q5VZL5-3|ZMYM4;ZMYM4|p.K1431Nfs*9|1|0.11|ENSG00000146463|chr1:35415698-35415698|G/-|frameshift_variant;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	MSMS	OvCa99_classI_Rep5	1	557.8046875	2	557.803823	1113.59309	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.255	1	56.255	55.755	56.755	0								0	0	0	0.013172	1	4655	4655		138.24	45.047	1				41698	5295	34421	34445	45189	45189					0.040839500831452824
NYRAFLLRRRF	11	Unmodified	_NYRAFLLRRRF_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.32373046875	3	504.628388	1510.86333	-0.88742	-0.00044782	-2.7104	-0.0013677	-3.5978	-0.0018155	504.62706559593346	105.16	0.69276	104.73	104.46	105.15	-0.43642					20	13	2	0	0	0	0.02625	1	9760	9760		24.232	7.0651	1	28726			41699	5231	34422	34446	45190	45190					0.12833723139169706
NYRYYGCWWYR	11	Unmodified	_NYRYYGCWWYR_					0	0	0			REV__ENST00000602591.1_1_6:30256646-30256907:-|nuORF	REV__ENST00000602591.1_1_6:30256646-30256907:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.7654418945312	3	543.906711	1628.6983	-1.0716	-0.00058287	-1.1213	-0.00060989	-2.193	-0.0011928	543.9061078120579	52.682	0.95266	49.474	49.196	50.149	-3.208					47	18	4	0	0	0	0.026505	1	3142	3142		5.6988	2.4875	1	191940	+		41700	28043	34423	34447	45191	45191					-0.09089876782763895
NYSNIRFQF	9	Unmodified	_NYSNIRFQF_					0	0	0		nc|ENSG00000139505|Q9Y217-2|MTMR6;ENSG00000139505|ENST00000381801|MTMR6	nc|ENSG00000139505|Q9Y217-2|MTMR6	nc|ENSG00000139505|Q9Y217-2|MTMR6	MULTI-MSMS	OvCa99_classI_Rep5	1	594.7950439453125	2	594.793455	1187.57236	-1.5167	-0.00090214	0.012455	7.4081E-06	-1.5043	-0.00089473	594.7934377268627	104.37	1.3786	104.37	104.06	105.44	0					81	31	3	0	0	0	0.025955	2	11686	11686;11720		139.97	49.194	1	12204000			41701	4777	34424	34448	45192;45193	45192					-0.01392640296535319
NYSPYVNYF	9	Unmodified	_NYSPYVNYF_					0	0	0		ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	ENSG00000156162|ENST00000414645|DPY19L4	MULTI-MSMS	OvCa99_classI_Rep5	1	583.7628784179688	2	583.761289	1165.50803	2.2554	0.0013166	-0.017502	-1.0217E-05	2.2379	0.0013064	583.7611464351128	121.38	1.3901	121.38	121.06	122.45	0					67	30	4	0	0	0	0.035142	2	13970	13948;13970		131.03	61.404	1	1547500			41702	5823	34425	34449	45194;45195	45195					-0.0681084017332978
NYSRNFSSF	9	Unmodified	_NYSRNFSSF_					0	0	0		ENSG00000133401|ENST00000438447|PDZD2;nc|ENSG00000133401|O15018-2|PDZD2	ENSG00000133401|ENST00000438447|PDZD2	ENSG00000133401|ENST00000438447|PDZD2	MULTI-MSMS	OvCa99_classI_Rep5	1	561.2556762695312	2	561.254163	1120.49377	1.0754	0.00060356	-0.56433	-0.00031673	0.51105	0.00028683	561.2537025360992	74.144	0.45995	74.144	73.945	74.405	0					25	11	3	0	0	0	0.2784	1	7322	7322		65.465	21.088	1	1875500			41703	4219	34426	34450	45196	45196					-0.061654926015989986
NYSRNFSSF	9	Unmodified	_NYSRNFSSF_					0	0	0		ENSG00000133401|ENST00000438447|PDZD2;nc|ENSG00000133401|O15018-2|PDZD2	ENSG00000133401|ENST00000438447|PDZD2	ENSG00000133401|ENST00000438447|PDZD2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	561.254163	1120.49377	0.81346	0.00045656	-6.3336	-0.0035547	-5.5201	-0.0030982	561.250706047943	77.314	0.6792	74.497	74.194	74.873	-2.8165	0.17675	-0.0051167	NaN	65.465	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51627			41704	4219	34426	34450							-0.061654926015989986
NYTDIKDYL	9	Unmodified	_NYTDIKDYL_					0	0	0		nc|ENSG00000112874|Q9BQG2-2|NUDT12;ENSG00000112874|ENST00000230792|NUDT12	nc|ENSG00000112874|Q9BQG2-2|NUDT12	nc|ENSG00000112874|Q9BQG2-2|NUDT12	MULTI-MSMS	OvCa99_classI_Rep5	1	572.7808227539062	2	572.779679	1143.5448	2.1298	0.0012199	0.29045	0.00016636	2.4203	0.0013863	572.7798420194748	106.51	1.2578	106.51	106.1	107.36	0					69	28	5	0	0	0	0.010478	3	11998	11976;11998;12026		167.23	76.859	1	7085700			41705	2934	34427	34451	45197;45198;45199	45198					-0.021225883474244256
NYTEWLQDL	9	Unmodified	_NYTEWLQDL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1;chr20:17621773-17624576|117|10.65|0.34|4.95|-|0|RRBP1,RRBP1|1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	591.2816162109375	2	591.277303	1180.54005	1.5403	0.00091072	0.39831	0.00023551	1.9386	0.0011462	591.277442134422	147.7	1.6114	147.7	147.36	148.97	0					70	32	4	0	0	0	0.046778	2	17272	17272;17292		120.87	18.877	1	859910			41706	3744	34428	34452	45200;45201	45200					-0.04299472490174594
NYTKAMRLF	9	Unmodified	_NYTKAMRLF_					0	0	0		ENSG00000182551|ENST00000327435|ADI1;nc|ENSG00000182551|Q9BV57-2|ADI1	ENSG00000182551|ENST00000327435|ADI1	ENSG00000182551|ENST00000327435|ADI1	MULTI-MSMS	OvCa99_classI_Rep5	1	572.3038940429688	2	572.302601	1142.59065	1.6921	0.00096838	0.64818	0.00037096	2.3403	0.0013393	572.3029060322572	78.721	1.1393	78.721	78.335	79.474	0					71	27	4	0	0	0	0.030815	1	7991	7991		134.81	60.836	1	5115600			41707	8007	34429	34453	45202	45202					0.02505778353815913
NYTLVSHLI	9	Unmodified	_NYTLVSHLI_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;ENST00000537638.6_1_12:57905855-57911076:+|nuORF;ENST00000548630.1_1_12:57906018-57906171:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	MULTI-MSMS	OvCa99_classI_Rep5	1	530.296630859375	2	530.295299	1058.57605	1.8956	0.0010053	0.020711	1.0983E-05	1.9164	0.0010162	530.295159476078	108.67	0.91281	108.67	108.28	109.19	0					52	20	4	0	0	0	0.0083893	1	12281	12281		205.58	109.39	1	4189300			41708	6744	34430	34454	45203	45203					0.049100294773325004
NYTLVSHLI	9	Unmodified	_NYTLVSHLI_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;ENST00000537638.6_1_12:57905855-57911076:+|nuORF;ENST00000548630.1_1_12:57906018-57906171:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	530.295299	1058.57605	0.049861	2.6441E-05	5.0215	0.0026629	5.0713	0.0026893	530.2978363578995	110.02	0.57703	108.88	108.66	109.24	-1.1444	0.060438	0.004625	NaN	205.58	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15741			41709	6744	34430	34454							0.049100294773325004
NYTLVSHLI	9	Unmodified	_NYTLVSHLI_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;ENST00000537638.6_1_12:57905855-57911076:+|nuORF;ENST00000548630.1_1_12:57906018-57906171:+|nuORF	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	530.295299	1058.57605	-0.033233	-1.7623E-05	7.0223	0.0037239	6.9891	0.0037063	530.2992947626893	110.5	0.42076	108.9	108.7	109.12	-1.6011	0.084856	0.0067471	NaN	205.58	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19954			41710	6744	34430	34454							0.049100294773325004
NYVALKFIT	9	Unmodified	_NYVALKFIT_					0	0	0		tr|A0A7D6ZTV0|A0A7D6ZTV0_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17120PE=4SV=1	tr|A0A7D6ZTV0|A0A7D6ZTV0_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17120PE=4SV=1	tr|A0A7D6ZTV0|A0A7D6ZTV0_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17120PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	534.809814453125	2	534.808042	1067.60153	1.8873	0.0010093	-0.089903	-4.8081E-05	1.7974	0.00096126	534.808334299349	136.08	1.9974	136.08	135.6	137.59	0					69	41	3	0	0	0	0.31747	1	15855	15855		60.972	5.4677	1	248880			41711	35759	34431	34455	45204	45204					0.07043503999761924
NYVEVTRKW	9	Unmodified	_NYVEVTRKW_					0	0	0		nc|ENSG00000173171|Q13505-3|MTX1;ENSG00000173171|ENST00000368376|MTX1;ENST00000495589.5_1_1:155181271-155183486:+|nuORF;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF	nc|ENSG00000173171|Q13505-3|MTX1;ENST00000481771.5_1_1:155181647-155183486:+|nuORF	nc|ENSG00000173171|Q13505-3|MTX1	MULTI-MSMS	OvCa99_classI_Rep5	1	597.8185424804688	2	597.81693	1193.61931	0.40453	0.00024184	-1.231	-0.00073591	-0.82647	-0.00049408	597.8161093889642	66.681	1.1567	66.681	66.372	67.528	0					74	28	5	0	0	0	0.030815	2	6184	6184;6214		134.81	49.895	1	14954000			41712	7355;12551	34432	34456	45205;45206	45205					0.0302421925462113
NYVFKKSPK	9	Unmodified	_NYVFKKSPK_					0	0	0		ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	ENSG00000178177|ENST00000635767|LCORL	MULTI-MSMS	OvCa9_classI_Rep2	2	555.822509765625	2	555.818941	1109.62333	4.315	0.0023984	1.8397	0.0010225	6.1547	0.0034209	555.8198103416565	25.114	1.0176	22.405	22.261	23.279	-2.7097					54	22	4	0	0	0	0.48324	1	226	226		44.117	1.7207	1	302060			41713	7737	34433	34457	45207	45207					0.0729030874831551
NYVKDLSRL	9	Unmodified	_NYVKDLSRL_					0	0	0		nc|ENSG00000144677|O15194-2|CTDSPL;ENSG00000144677|ENST00000273179|CTDSPL;ENSG00000144579|ENST00000273062|CTDSP1;OXSR1-CTDSPL|1|fusion;OXSR1-CTDSPL|2|fusion;ENST00000464255.1_1_2:219265892-219269145:+|nuORF;nc|ENSG00000144579|Q9GZU7-3|CTDSP1;nc|ENSG00000144579|Q9GZU7-2|CTDSP1;ENST00000497677.5_1_2:219264813-219268311:+|nuORF	nc|ENSG00000144677|O15194-2|CTDSPL;ENST00000464255.1_1_2:219265892-219269145:+|nuORF	nc|ENSG00000144677|O15194-2|CTDSPL	MULTI-MSMS	OvCa99_classI_Rep5	1	554.3131713867188	2	554.31148	1106.60841	1.0672	0.00059154	-0.55743	-0.00030899	0.50972	0.00028255	554.3112096352327	74.569	0.8242	74.569	74.056	74.88	0					52	20	3	0	0	0	0.024645	1	7380	7380		141.52	31.401	1	4237100			41714	5174;12245	34434	34458	45208	45208					0.05936816880330298
NYVKIKLCL	9	Unmodified	_NYVKIKLCL_					0	0	0		ENST00000380050.7_1_7:90836599-90836752:+|nuORF	ENST00000380050.7_1_7:90836599-90836752:+|nuORF	ENST00000380050.7_1_7:90836599-90836752:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.79150390625	2	547.325545	1092.63654	1.0957	0.00059969	4.2776	0.0023412	5.3732	0.0029409	547.327917208574	74.655	0.32468	74.655	74.478	74.802	0					13	7	2	0	0	0	0.027462	1	7402	7402		38.806	20.482	1	271710			41715	11141	34435	34459	45209	45209					0.09392423536064598
NYVLAVLSKE	10	Unmodified	_NYVLAVLSKE_					0	0	0			REV__tr|A0A7D6VQ94|A0A7D6VQ94_9CLOTDUF3793familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22250PE=4SV=1	REV__tr|A0A7D6VQ94|A0A7D6VQ94_9CLOTDUF3793familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22250PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	568.326416015625	2	568.321514	1134.62847	2.0638	0.0011729	-0.63836	-0.00036279	1.4254	0.00081008	568.3208485134346	112.77	0.44928	112.77	112.61	113.06	0					24	9	3	0	0	0	0.44431	1	12839	12839		62.107	1.9892	1	782440	+		41716	31307	34436	34460	45210	45210					0.06654567820282864
NYVYVLNDNK	10	Unmodified	_NYVYVLNDNK_					0	0	0			REV__nc|ENSG00000112769|Q16363-2|LAMA4	REV__nc|ENSG00000112769|Q16363-2|LAMA4	MSMS	OvCa99_classI_Rep5	1	621.3139038085938	2	621.311677	1240.6088	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.38	1	117.38	116.88	117.88	0								0	0	0	0.1478	1	13444	13444		49.536	6.6718	1		+		41717	18117	34437	34461	45211	45211					-0.0018780819050334685
NYWAGVSA	8	Unmodified	_NYWAGVSA_					0	0	0		ENST00000557151.5_3_14:71788125-71995420:+|nuORF	ENST00000557151.5_3_14:71788125-71995420:+|nuORF	ENST00000557151.5_3_14:71788125-71995420:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	434.2035217285156	2	434.20341	866.392267	1.2394	0.00053816	-1.5745	-0.00068363	-0.33503	-0.00014547	434.2025952345841	127.91	1.6798	127.68	127.34	129.02	-0.22697					69	33	3	0	0	0	0.74679	1	12537	12537		28.254	4.0515	1	238510			41718	13681	34438	34462	45212	45212					-0.04627319233520666
NYYMKKQNQ	9	Unmodified	_NYYMKKQNQ_					0	0	0			REV__ENSG00000205359|ENST00000506729|SLCO6A1	REV__ENSG00000205359|ENST00000506729|SLCO6A1	MULTI-MSMS	OvCa99_classI_Rep5	1	608.7958374023438	2	608.792598	1215.57064	1.1014	0.00067054	2.213	0.0013473	3.3144	0.0020178	608.7936363998955	157.54	2.009	157.54	156.55	158.56	0					101	40	3	0	0	0	0.5811	1	18506	18506		34.173	0	1	160130	+		41719	23213	34439	34463	45213	45213					-0.02852017376767435
PAAAAAVAAR	10	Unmodified	_PAAAAAVAAR_					0	0	0			REV__ENST00000544915.5_2_12:27485797-27521195:+|nuORF	REV__ENST00000544915.5_2_12:27485797-27521195:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	435.2598571777344	2	434.753601	867.49265	-0.028909	-1.2568E-05	0.95346	0.00041452	0.92455	0.00040195	434.753783488008	52.803	0.64558	49.595	49.4	50.046	-3.208					15	12	2	0	0	0	0.026982	1	3225	3225		23.042	12.777	1	12710	+		41720	27407	34440	34464	45214	45214					0.0536033782012737
PAACLLLNAI	10	Unmodified	_PAACLLLNAI_					0	0	0		ENST00000262124.15_1_18:12985281-12985455:+|nuORF	ENST00000262124.15_1_18:12985281-12985455:+|nuORF	ENST00000262124.15_1_18:12985281-12985455:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.7898864746094	2	499.788795	997.563038	0.55653	0.00027815	3.2494	0.001624	3.8059	0.0019021	499.7902846838564	35.344	1.1491	32.495	32.19	33.339	-2.849					46	22	3	0	0	0	0.62668	1	1126	1126		38.806	0.99462	1	102760			41721	9882	34441	34465	45215	45215					0.06415875093591694
PAAFAPLPRV	10	Unmodified	_PAAFAPLPRV_					0	0	0		ENSG00000004779|ENST00000007516|NDUFAB1	ENSG00000004779|ENST00000007516|NDUFAB1	ENSG00000004779|ENST00000007516|NDUFAB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.8063354492188	2	519.808377	1037.6022	-1.1584	-0.00060212	-3.5592	-0.0018501	-4.7175	-0.0024522	519.8065040186947	40.821	1.6134	37.866	37.58	39.193	-2.9541					79	30	3	0	0	0	0.50656	1	1797	1797		53.351	7.3792	1	1548800			41722	832	34442	34466	45216	45216					0.08490343439461867
PAAFGPSLPI	10	Unmodified	_PAAFGPSLPI_					0	0	0		nc|ENSG00000130695|Q6P2H3-4|CEP85;CEP85|p.Q735Hfs*9|1|0.06|ENSG00000130695|chr1:26277209-26277209|G/-|frameshift_variant;ENSG00000130695|ENST00000451429|CEP85;nc|ENSG00000130695|Q6P2H3|CEP85	nc|ENSG00000130695|Q6P2H3-4|CEP85	nc|ENSG00000130695|Q6P2H3-4|CEP85	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.27154541015625	2	485.273835	968.533118	-1.0101	-0.00049017	-3.6632	-0.0017777	-4.6733	-0.0022678	485.27192297088214	45.503	2.1275	42.464	42.075	44.203	-3.0385					78	40	3	0	0	0	0.41846	1	2329	2329		65.803	3.6958	1	577530			41723	226	34443	34467	45217	45217					0.047592594199159066
PAAFHLVVYQ	10	Unmodified	_PAAFHLVVYQ_					0	0	0		nc|ENSG00000109118|Q96QT6-3|PHF12	nc|ENSG00000109118|Q96QT6-3|PHF12	nc|ENSG00000109118|Q96QT6-3|PHF12	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.7584838867188	2	572.811116	1143.60768	1.2423	0.0007116	-2.143	-0.0012275	-0.9007	-0.00051593	572.8097364636382	81.641	1.5344	81.641	81.372	82.906	0					125	36	8	0	0	0	0.027048	1	8575	8575		25.45	0	1	21378000			41724	14950	34444	34468	45218	45218					0.041620222312758415
PAAKATHI	8	Unmodified	_PAAKATHI_					0	0	0			REV__tr|A0A553SGX9|A0A553SGX9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_11740PE=4SV=1	REV__tr|A0A553SGX9|A0A553SGX9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_11740PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	404.73846435546875	2	404.73742	807.460287	1.5499	0.00062729	-1.4762	-0.00059749	0.073641	2.9805E-05	404.7367325762309	57.866	1.5121	54.521	54.24	55.752	-3.3449					57	29	4	0	0	0	0.61436	1	3779	3779		60.972	13.315	1	557430	+		41725	29748	34445	34469	45219	45219					0.048855504171342545
PAAKLKRA	8	Unmodified	_PAAKLKRA_					0	0	0			REV__nc|ENSG00000154928|P54762-6|EPHB1	REV__nc|ENSG00000154928|P54762-6|EPHB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	428.76171875	2	427.782162	853.549771	0.28902	0.00012364	-0.12618	-5.3976E-05	0.16284	6.9662E-05	427.7820505037676	70.75	0.86137	70.75	70.447	71.308	0					31	21	2	0	0	0	0.028476	1	6794	6794		12.959	8.9739	1	455500	+		41726	28939	34446	34470	45220	45220					0.11713805096508167
PAAKPAKM	8	Unmodified	_PAAKPAKM_					0	0	0		nc|ENSG00000054938|Q6WN34-3|CHRDL2	nc|ENSG00000054938|Q6WN34-3|CHRDL2	nc|ENSG00000054938|Q6WN34-3|CHRDL2	MULTI-MSMS	OvCa99_classI_Rep5	1	407.23797607421875	2	407.236199	812.457844	0.74137	0.00030191	3.7389	0.0015226	4.4803	0.0018245	407.2375929140366	29.312	0.44994	29.312	29.186	29.636	0					15	8	2	0	0	0	0.75915	1	1034	1034		20.482	1.1219	1	342040			41727	14877	34447	34471	45221	45221					0.04411378687825618
PAAKTRKQA	9	Unmodified	_PAAKTRKQA_					0	0	0		ENSG00000206181|ENST00000332567|ELOA2	ENSG00000206181|ENST00000332567|ELOA2	ENSG00000206181|ENST00000332567|ELOA2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.27459716796875	2	485.793258	969.571963	-1.0253	-0.0004981	-0.061303	-2.978E-05	-1.0866	-0.00052788	485.7930198383909	45.451	0.78275	42.412	42.281	43.064	-3.0385					19	14	2	0	0	0	0.027462	1	2343	2343		45.952	30.31	1	31404			41728	9095	34448	34472	45222	45222					0.08595984774274257
PAALIRKNHSA	11	Unmodified	_PAALIRKNHSA_					0	0	0		ENST00000564063.1_1_1:108743520-108743658:+|nuORF	ENST00000564063.1_1_1:108743520-108743658:+|nuORF	ENST00000564063.1_1_1:108743520-108743658:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3417358398438	2	589.343646	1176.67274	-0.99558	-0.00058674	-0.19072	-0.0001124	-1.1863	-0.00069914	589.3433618627441	145.15	3.8411	143.72	141.74	145.58	-1.4357					179	73	4	0	0	0	0.71789	1	14371	14371		23.523	3.5259	1	92509			41729	13797	34449	34473	45223	45223					0.09147016757151505
PAALLPPRGL	10	Unmodified	_PAALLPPRGL_					0	0	0		ENST00000498611.5_1_22:50656167-50657252:-|nuORF	ENST00000498611.5_1_22:50656167-50657252:-|nuORF	ENST00000498611.5_1_22:50656167-50657252:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	502.8144226074219	2	502.816202	1003.61785	-4.451	-0.0022381	0.22723	0.00011425	-4.2238	-0.0021238	502.8162192928447	153.83	1.4178	153.6	153.28	154.7	-0.22696					88	30	4	0	0	0	0.75594	1	15706	15706		24.203	0	1	684970			41730	12828	34450	34474	45224	45224					0.11618629956512905
PAALPRERLDK	11	Unmodified	_PAALPRERLDK_					0	0	0		ENST00000543087.5_1_11:18512432-18536353:-|nuORF	ENST00000543087.5_1_11:18512432-18536353:-|nuORF	ENST00000543087.5_1_11:18512432-18536353:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.3700561523438	2	633.369861	1264.72517	-2.6571	-0.001683	1.5103	0.00095658	-1.1468	-0.00072637	633.3706685096566	150.42	2.9234	148.98	147.78	150.7	-1.4344					195	63	4	0	0	0	0.72473	1	14889	14889		19.104	3.4617	1	147740			41731	13486	34451	34475	45225	45225					0.1033955510006308
PAALRLLLL	9	Unmodified	_PAALRLLLL_					0	0	0		ENSG00000131477|ENST00000253796|RAMP2;nc|ENSG00000131477|O60895-2|RAMP2	ENSG00000131477|ENST00000253796|RAMP2	ENSG00000131477|ENST00000253796|RAMP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.33819580078125	2	490.33677	978.658987	2.3125	0.0011339	-3.376	-0.0016554	-1.0635	-0.00052147	490.335203673426	137.13	5.8682	135.59	135.18	141.05	-1.5437					314	118	5	0	0	0	0.53957	1	13519	13519		38.806	0	1	8417000			41732	4071	34452	34476	45226	45226					0.16880390996004735
PAALRPLVL	9	Unmodified	_PAALRPLVL_					0	0	0		nc|ENSG00000160593|Q86YT9-4|JAML;nc|ENSG00000160593|Q86YT9-2|JAML;ENSG00000160593|ENST00000356289|JAML	nc|ENSG00000160593|Q86YT9-4|JAML	nc|ENSG00000160593|Q86YT9-4|JAML	MULTI-MSMS	OvCa9_classI_Rep2	2	475.312744140625	2	475.313295	948.612037	-1.0081	-0.00047916	0.74891	0.00035597	-0.25918	-0.00012319	475.31354255988356	103.19	1.4817	102.5	102.18	103.66	-0.68459					75	29	4	0	0	0	0.27546	1	9519	9519		65.803	0	1	611260			41733	6073	34453	34477	45227	45227					0.1356753144484628
PAALRPLVL	9	Unmodified	_PAALRPLVL_					0	0	0		nc|ENSG00000160593|Q86YT9-4|JAML;nc|ENSG00000160593|Q86YT9-2|JAML;ENSG00000160593|ENST00000356289|JAML	nc|ENSG00000160593|Q86YT9-4|JAML	nc|ENSG00000160593|Q86YT9-4|JAML	MULTI-MSMS	OvCa9_classI_Rep3	3	475.31268310546875	2	475.313295	948.612037	1.1961	0.00056852	-1.5827	-0.00075229	-0.38663	-0.00018377	475.3124611477531	104.01	1.7182	102.58	102.29	104.01	-1.4347					78	32	4	0	0	0	0.27546	1	7223	7223		65.803	0	1	814480			41734	6073	34453	34477	45228	45228					0.1356753144484628
PAALRRLQL	9	Unmodified	_PAALRRLQL_					0	0	0		ENST00000536896.2_1_1:26146746-26147157:-|nuORF	ENST00000536896.2_1_1:26146746-26147157:-|nuORF	ENST00000536896.2_1_1:26146746-26147157:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	519.3320922851562	2	519.33255	1036.65055	0.67622	0.00035118	-1.2042	-0.00062537	-0.52796	-0.00027419	519.3318594599918	71.111	1.2027	68.392	68.008	69.211	-2.7196					78	23	4	0	0	0	0.57242	1	3277	3277		35.201	3.2459	1	1378400			41735	13398	34454	34478	45229	45229					0.13368837079360674
PAAMADTF	8	Unmodified	_PAAMADTF_					0	0	0		PKLR|p.L437Rfs*3|1|0.23|ENSG00000143627|chr1:155293279-155293303|GCTGCCCGACGTAGCTCCTCAAACA/-|frameshift_variant;nc|ENSG00000143627|P30613-2|PKLR;ENSG00000143627|ENST00000342741|PKLR	PKLR|p.L437Rfs*3|1|0.23|ENSG00000143627|chr1:155293279-155293303|GCTGCCCGACGTAGCTCCTCAAACA/-|frameshift_variant	PKLR|p.L437Rfs*3|1|0.23|ENSG00000143627|chr1:155293279-155293303|GCTGCCCGACGTAGCTCCTCAAACA/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.8908996582031	2	412.186371	822.35819	0.19921	8.2111E-05	4.4197	0.0018217	4.6189	0.0019038	412.18966424741495	59.552	0.38842	59.552	59.377	59.766	0					16	9	3	0	0	0	0.028476	1	5150	5150		20.482	12.792	1	205980			41736	5080	34455	34479	45230	45230					-0.0600948371678669
PAAPAAARR	9	Unmodified	_PAAPAAARR_					0	0	0			REV__ENST00000334350.6_1_16:56691728-56693149:+|nuORF	REV__ENST00000334350.6_1_16:56691728-56693149:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	440.26385498046875	2	440.759218	879.503883	-0.051221	-2.2576E-05	-2.987	-0.0013166	-3.0383	-0.0013391	440.7577976251847	142.65	0.84747	141.21	140.94	141.79	-1.4427					23	16	2	0	0	0	0.027462	1	13976	13976		13.775	0.81615	1	31914	+		41737	24564	34456	34480	45231	45231					0.059311599142688465
PAAPAAARR	9	Unmodified	_PAAPAAARR_					0	0	0			REV__ENST00000334350.6_1_16:56691728-56693149:+|nuORF	REV__ENST00000334350.6_1_16:56691728-56693149:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	440.759218	879.503883	-0.16896	-7.4469E-05	-3.2446	-0.0014301	-3.4135	-0.0015045	440.7576598106388	141.42	0.39731	141.2	141.07	141.47	-0.22696	0.021052	-0.00078521	NaN	13.775	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17017	+		41738	24564	34456	34480							0.059311599142688465
PAAPAAARR	9	Unmodified	_PAAPAAARR_					0	0	0			REV__ENST00000334350.6_1_16:56691728-56693149:+|nuORF	REV__ENST00000334350.6_1_16:56691728-56693149:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	440.759218	879.503883	-2.1778	-0.00095989	-1.1739	-0.00051739	-3.3517	-0.0014773	440.75855388055817	142.14	0.54642	141.13	140.93	141.48	-1.0106	-0.051185	0.0010402	NaN	13.775	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13053	+		41739	24564	34456	34480							0.059311599142688465
PAAPLEPFK	9	Unmodified	_PAAPLEPFK_					0	0	0			REV__ENSG00000212864|ENST00000391553|RNF208	REV__ENSG00000212864|ENST00000391553|RNF208	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.27459716796875	2	485.273835	968.533118	-1.0101	-0.00049017	-3.6632	-0.0017777	-4.6733	-0.0022678	485.27192297088214	45.503	2.1275	42.464	42.075	44.203	-3.0385					78	40	3	0	0	0	0.13482	1	2343	2343		87.754	13.499	1	577530	+		41740	23249	34457	34481	45232	45232					0.04759259419893169
PAAPLEPFK	9	Unmodified	_PAAPLEPFK_					0	0	0			REV__ENSG00000212864|ENST00000391553|RNF208	REV__ENSG00000212864|ENST00000391553|RNF208	MULTI-MATCH	OvCa9_classI_Rep2	2		2	485.273835	968.533118	-0.081883	-3.9736E-05	-4.197	-0.0020367	-4.2788	-0.0020764	485.2716256875657	45.435	1.3474	42.726	42.398	43.745	-2.7097	0.13073	-0.0003049	NaN	87.754	51	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82551	+		41741	23249	34457	34481							0.04759259419893169
PAAPLLRAP	9	Unmodified	_PAAPLLRAP_					0	0	0			REV__ENST00000296350.9_1_3:196729467-196730019:-|nuORF	REV__ENST00000296350.9_1_3:196729467-196730019:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	453.2828063964844	2	453.281995	904.549437	-0.87869	-0.00039829	0.49135	0.00022272	-0.38734	-0.00017557	453.2821256321553	82.783	2.1486	80.487	79.836	81.985	-2.2963					79	44	3	0	0	0	0.21395	1	4683	4683		73.975	18.471	1	898040	+		41742	24200	34458	34482	45233	45233					0.09334385376655518
PAAPLLRAP	9	Unmodified	_PAAPLLRAP_					0	0	0			REV__ENST00000296350.9_1_3:196729467-196730019:-|nuORF	REV__ENST00000296350.9_1_3:196729467-196730019:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	453.281995	904.549437	2.2213	0.0010069	-2.8832	-0.0013069	-0.66189	-0.00030002	453.28067882988864	82.321	1.9543	80.673	79.869	81.823	-1.6485	0.10678	-0.0018677	NaN	73.975	94	38	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	478200	+		41743	24200	34458	34482							0.09334385376655518
PAAPLLRAP	9	Unmodified	_PAAPLLRAP_					0	0	0			REV__ENST00000296350.9_1_3:196729467-196730019:-|nuORF	REV__ENST00000296350.9_1_3:196729467-196730019:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	453.281995	904.549437	-0.87869	-0.00039829	0.49135	0.00022272	-0.38734	-0.00017557	453.2821256321553	82.783	2.1486	80.487	79.836	81.985	-2.2963	-0.079405	0.0011915	NaN	73.975	79	44	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	898040	+		41744	24200	34458	34482							0.09334385376655518
PAAPLLRAP	9	Unmodified	_PAAPLLRAP_					0	0	0			REV__ENST00000296350.9_1_3:196729467-196730019:-|nuORF	REV__ENST00000296350.9_1_3:196729467-196730019:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	453.281995	904.549437	0.43409	0.00019677	-0.58858	-0.00026679	-0.15449	-7.0026E-05	453.28155957037893	83.207	1.4917	80.539	80.187	81.679	-2.6687	-0.027379	0.00021251	NaN	73.975	77	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	679520	+		41745	24200	34458	34482							0.09334385376655518
PAAPRNSP	8	Unmodified	_PAAPRNSP_					0	0	0		ADD1-FAM193A|2|fusion;ADD1-FAM193A|1|fusion;ADD1-FAM193A|3|fusion;ADD1-FAM193A|4|fusion;nc|ENSG00000125386|P78312|FAM193A;nc|ENSG00000125386|P78312-5|FAM193A;nc|ENSG00000125386|P78312-2|FAM193A;nc|ENSG00000125386|P78312-6|FAM193A;nc|ENSG00000125386|P78312-4|FAM193A;nc|ENSG00000125386|P78312-3|FAM193A;ENSG00000125386|ENST00000637812|FAM193A	ADD1-FAM193A|2|fusion;ENSG00000125386|ENST00000637812|FAM193A	ADD1-FAM193A|2|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.88629150390625	2	405.216852	808.419151	1.0643	0.00043125	0.1388	5.6242E-05	1.2031	0.0004875	405.2170116786477	35.719	0.32628	35.719	35.566	35.892	0					8	6	2	0	0	0	0.028476	1	1830	1830		13.775	0	1	21409			41746	37;3705	34459	34483	45234	45234					0.007277893776631572
PAAPRPAFVI	10	Unmodified	_PAAPRPAFVI_					0	0	0		nc|ENSG00000138835|P49796-4|RGS3;ENSG00000138835|ENST00000695401|RGS3;nc|ENSG00000138835|P49796-6|RGS3;nc|ENSG00000138835|P49796|RGS3;nc|ENSG00000138835|P49796-1|RGS3;ENST00000488620.5_1_9:116327559-116353744:+|nuORF	nc|ENSG00000138835|P49796-4|RGS3	nc|ENSG00000138835|P49796-4|RGS3	MULTI-MSMS	OvCa9_classI_Rep2	2	519.8060913085938	2	519.808377	1037.6022	0.30324	0.00015763	-4.3138	-0.0022424	-4.0106	-0.0020847	519.8059790400328	40.39	1.3312	37.68	37.452	38.783	-2.7097					65	26	4	0	0	0	0.56767	1	2040	2040		45.952	5.1738	1	288990			41747	4738	34460	34484	45235	45235					0.08490343439461867
PAAPRPPF	8	Unmodified	_PAAPRPPF_					0	0	0		ENSG00000070756|ENST00000318607|PABPC1	ENSG00000070756|ENST00000318607|PABPC1	ENSG00000070756|ENST00000318607|PABPC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	425.7486572265625	2	426.739963	851.465373	-0.25385	-0.00010833	-1.8141	-0.00077414	-2.0679	-0.00088247	426.7380497948797	38.599	0.26538	38.599	38.44	38.705	0					7	5	2	0	0	0	0.028476	1	2206	2206		29.842	8.1392	1	18994			41748	1433	34461	34485	45236	45236					0.03369854279753781
PAARAARRAL	10	Unmodified	_PAARAARRAL_					0	0	0		ENST00000545837.1_1_12:66583090-66590663:+|nuORF;ENST00000261233.8_1_12:66583006-66597530:+|nuORF;ENST00000457197.2_1_12:66583039-66603949:+|nuORF	ENST00000545837.1_1_12:66583090-66590663:+|nuORF	ENST00000545837.1_1_12:66583090-66590663:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.2860107421875	2	526.825424	1051.63629	0.011209	5.9053E-06	1.8939	0.00099776	1.9051	0.0010037	527.3279088235676	114	0.64163	113.88	113.47	114.11	-0.11777					18	12	2	0	0	0	0.027056	1	10782	10782		20.947	0	1	14868			41749	9858	34462	34486	45237	45237					0.11254184651079413
PAARHAGK	8	Unmodified	_PAARHAGK_					0	0	0		ENST00000358825.9_1_11:129787049-129788476:-|nuORF	ENST00000358825.9_1_11:129787049-129788476:-|nuORF	ENST00000358825.9_1_11:129787049-129788476:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.7071533203125	2	404.232836	806.45112	1.1068	0.00044742	-1.0952	-0.0004427	0.011683	4.7225E-06	404.2325002285663	43.255	0.4263	43.255	42.926	43.353	0					14	9	2	0	0	0	0.028476	1	2807	2807		18.324	0	1	35430			41750	10743	34463	34487	45238	45238					0.040152018514731935
PAARKKAGTT	10	Unmodified	_PAARKKAGTT_					0	0	0			REV__ENSG00000131747|ENST00000423485|TOP2A	REV__ENSG00000131747|ENST00000423485|TOP2A	MULTI-MSMS	OvCa9_classI_Rep2	2	500.79815673828125	2	500.79854	999.582528	-3.3891	-0.0016973	3.13	0.0015675	-0.25912	-0.00012977	500.79997207948645	149.12	1.1552	148.89	148.52	149.67	-0.22696					61	22	4	0	0	0	0.71192	1	15086	15086		29.15	9.7896	1	177980	+		41751	19031	34464	34488	45239	45239					0.08271967428709104
PAARLRQEL	9	Unmodified	_PAARLRQEL_					0	0	0		ENSG00000006555|ENST00000371276|TTC22	ENSG00000006555|ENST00000371276|TTC22	ENSG00000006555|ENST00000371276|TTC22	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.758056640625	2	527.311815	1052.60908	-0.56595	-0.00029843	1.0797	0.00056936	0.51379	0.00027093	527.3099773562769	68.42	0.41789	68.42	68.274	68.692	0					13	9	2	0	0	0	0.027462	1	6482	6482		42.396	1.618	1	191900			41752	880	34465	34489	45240	45240					0.08487656320039605
PAARRSSLP	9	Unmodified	_PAARRSSLP_					0	0	0			REV__ENST00000329073.8_1_12:132627992-132628085:-|nuORF	REV__ENST00000329073.8_1_12:132627992-132628085:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	477.77740478515625	2	477.777608	953.540663	0.30924	0.00014775	-0.9987	-0.00047716	-0.68946	-0.00032941	477.7771636832581	43.542	2.3879	40.832	40.509	42.897	-2.7097					104	47	3	0	0	0	0.33652	1	2465	2465		58.782	4.0056	1	3363800	+		41753	24518	34466	34490	45241	45241					0.06203411740193587
PAASLGAAPKR	11	Unmodified	_PAASLGAAPKR_					0	0	0			REV__ENSG00000115310|ENST00000337526|RTN4	REV__ENSG00000115310|ENST00000337526|RTN4	MULTI-MSMS	OvCa9_classI_Rep2	2	519.80615234375	2	519.806365	1037.59818	0.30324	0.00015763	-0.44438	-0.00023099	-0.14114	-7.3364E-05	519.8059790400328	40.39	1.3312	37.68	37.452	38.783	-2.7097					65	26	4	0	0	0	0.67529	1	2046	2046		37.812	6.2817	1	288990	+		41754	18235	34467	34491	45242	45242					0.08088253945743418
PAATIWDYI	9	Unmodified	_PAATIWDYI_					0	0	0		ENSG00000183742|ENST00000400331|MACC1	ENSG00000183742|ENST00000400331|MACC1	ENSG00000183742|ENST00000400331|MACC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.3212890625	2	525.26875	1048.52295	0.16376	8.6017E-05	-4.0584	-0.0021317	-3.8946	-0.0020457	525.2664626010311	110.64	1.1573	109.04	108.7	109.86	-1.6011					46	21	3	0	0	0	0.027456	1	10158	10158		47.916	7.1374	1	122160			41755	8100	34468	34492	45243	45243					0.00062651694656779
PAATIWDYI	9	Unmodified	_PAATIWDYI_					0	0	0		ENSG00000183742|ENST00000400331|MACC1	ENSG00000183742|ENST00000400331|MACC1	ENSG00000183742|ENST00000400331|MACC1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	525.26875	1048.52295	0.088772	4.6629E-05	-4.0826	-0.0021444	-3.9938	-0.0020978	525.2664316411704	109.31	1.3852	109.14	108.67	110.06	-0.17236	0.088657	-0.00012362	NaN	47.916	62	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64967			41756	8100	34468	34492							0.00062651694656779
PAATIWDYI	9	Unmodified	_PAATIWDYI_					0	0	0		ENSG00000183742|ENST00000400331|MACC1	ENSG00000183742|ENST00000400331|MACC1	ENSG00000183742|ENST00000400331|MACC1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	525.26875	1048.52295	-0.25456	-0.00013371	-3.6589	-0.0019219	-3.9134	-0.0020556	525.2665496802784	110.12	1.1928	108.97	108.77	109.96	-1.1444	-0.078261	0.00032151	NaN	47.916	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115060			41757	8100	34468	34492							0.00062651694656779
PAATTSSTGVA	11	Unmodified	_PAATTSSTGVA_					0	0	0		ENSG00000102471|ENST00000218652|NDFIP2	ENSG00000102471|ENST00000218652|NDFIP2	ENSG00000102471|ENST00000218652|NDFIP2	MULTI-SECPEP	OvCa9_classI_Rep2	2	481.2823791503906	2	481.743096	961.47164	-0.73088	-0.0003521	-1.7427	-0.00083952	-2.4735	-0.0011916	481.7420224743087	58.358	0.90106	55.578	55.184	56.086	-2.7801					25	17	2	0	0	0	0.025416	1	4168	4168		26.693	0	1	22073			41758	2240	34469	34493	45244	45244					-0.010637170700306342
PADEEAEDSVF	11	Unmodified	_PADEEAEDSVF_					0	0	0		sp|P16761|PP85_HCMVAPhosphoprotein85OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL25PE=3SV=1;sp|F5HGJ4|PP85_HCMVMPhosphoprotein85OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL25PE=1SV=1	sp|P16761|PP85_HCMVAPhosphoprotein85OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL25PE=3SV=1	sp|P16761|PP85_HCMVAPhosphoprotein85OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL25PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	604.747802734375	2	604.751315	1207.48808	-5.8265	-0.0035236	-2.7332	-0.0016529	-8.5596	-0.0051765	605.2514510820835	160.39	1.998	158.78	158.37	160.37	-1.6101					169	45	5	0	0	0	0.72479	1	15979	15979		18.262	2.6203	1	210060			41759	32875	34470	34494	45245	45245					-0.10736680694617462
PADEHGGDL	9	Unmodified	_PADEHGGDL_					0	0	0			REV__CUBN|p.N2467Tfs*26|1|0.51|ENSG00000107611|chr10:16913949-16913949|A/-|frameshift_variant	REV__CUBN|p.N2467Tfs*26|1|0.51|ENSG00000107611|chr10:16913949-16913949|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	455.7004699707031	2	455.698689	909.382825	-0.55973	-0.00025507	2.1623	0.00098538	1.6026	0.00073031	455.6992539776933	66.165	1.4306	66.165	65.467	66.898	0					79	35	4	0	0	0	0.46377	1	6122	6122		45.952	5.3793	1	1607100	+		41760	16257	34471	34495	45246	45246					-0.07549132309691231
PADQKTVIPIL	11	Unmodified	_PADQKTVIPIL_					0	0	0		nc|ENSG00000116127|Q8TCU4-2|ALMS1;ENSG00000116127|ENST00000613296|ALMS1;nc|ENSG00000116127|Q8TCU4-3|ALMS1	nc|ENSG00000116127|Q8TCU4-2|ALMS1	nc|ENSG00000116127|Q8TCU4-2|ALMS1	MULTI-MSMS	OvCa9_classI_Rep3	3	597.855712890625	2	597.858264	1193.70197	-1.9041	-0.0011384	-1.3848	-0.00082789	-3.2889	-0.0019663	597.8573316932594	144.83	3.9651	143.86	141.71	145.68	-0.97301					192	79	4	0	0	0	0.72466	1	12104	12104		19.997	0.6368	1	187110			41761	3155	34472	34496	45247	45247					0.11287116262769814
PAEHPLLR	8	Unmodified	_PAEHPLLR_					0	0	0		nc|ENSG00000107147|Q5JUK3-4|KCNT1;nc|ENSG00000107147|Q5JUK3|KCNT1;ENSG00000107147|ENST00000371757|KCNT1;nc|ENSG00000107147|Q5JUK3-2|KCNT1;CAMSAP1-KCNT1|1|fusion	nc|ENSG00000107147|Q5JUK3-4|KCNT1	nc|ENSG00000107147|Q5JUK3-4|KCNT1	MULTI-MSMS	OvCa99_classI_Rep5	1	466.769775390625	2	466.769252	931.52395	-0.52029	-0.00024286	0.56189	0.00026228	0.041605	1.942E-05	466.7694002665362	59.164	0.75418	59.164	58.932	59.686	0					53	19	4	0	0	0	0.67745	1	5093	5093		47.916	0	1	10313000			41762	2589	34473	34497	45248	45248					0.055449108542461545
PAEHPLLR	8	Unmodified	_PAEHPLLR_					0	0	0		nc|ENSG00000107147|Q5JUK3-4|KCNT1;nc|ENSG00000107147|Q5JUK3|KCNT1;ENSG00000107147|ENST00000371757|KCNT1;nc|ENSG00000107147|Q5JUK3-2|KCNT1;CAMSAP1-KCNT1|1|fusion	nc|ENSG00000107147|Q5JUK3-4|KCNT1	nc|ENSG00000107147|Q5JUK3-4|KCNT1	MULTI-MSMS	OvCa99_classI_Rep5	1	466.7705383300781	2	466.769252	931.52395	2.0325	0.00094872	-0.56774	-0.000265	1.4648	0.00068372	466.76926594166116	90.491	3.1615	90.491	90.143	93.305	0					192	76	6	0	0	0	0.66704	1	9718	9718		50.025	5.4935	1	25081000			41763	2589	34473	34497	45249	45249					0.055449108542461545
PAFILLLLPP	10	Unmodified	_PAFILLLLPP_					0	0	0		ENST00000535372.1_1_6:160182524-160183172:-|nuORF;ENST00000546087.5_2_6:160182863-160183172:-|nuORF	ENST00000535372.1_1_6:160182524-160183172:-|nuORF	ENST00000535372.1_1_6:160182524-160183172:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.283935546875	2	547.354628	1092.6947	0.84393	0.00046193	1.0565	0.00057828	1.9004	0.0010402	547.3548997951513	153.94	0.58421	153.94	153.74	154.32	0					19	11	2	0	0	0	0.027007	1	18022	18022		26.796	0	1	34554			41764	13372	34474	34498	45250	45250					0.15206428452984255
PAFKRRRR	8	Unmodified	_PAFKRRRR_					0	0	0		ENSG00000146834|ENST00000310512|MEPCE	ENSG00000146834|ENST00000310512|MEPCE	ENSG00000146834|ENST00000310512|MEPCE	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.3184204101562	2	543.841408	1085.66826	0.28518	0.00015509	0.44075	0.0002397	0.72594	0.00039479	543.8411408581634	34.585	0.35032	31.797	31.698	32.048	-2.7881					9	6	2	0	0	0	0.028476	1	1023	1023		20.482	1.3783	1	5554.5			41765	5309	34475	34499	45251	45251					0.12885597124886772
PAFLWGLLL	9	Unmodified	_PAFLWGLLL_					0	0	0			REV__nc|ENSG00000140675|P31639-2|SLC5A2	REV__nc|ENSG00000140675|P31639-2|SLC5A2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.801025390625	2	515.310221	1028.60589	0.13262	6.8342E-05	4.4537	0.0022951	4.5864	0.0023634	515.3114213838417	64.694	0.48495	61.209	61.114	61.599	-3.4854					14	9	2	0	0	0	0.027462	1	4660	4660		39.021	9.18	1	28613	+		41766	19692	34476	34500	45252	45252					0.0927301321332834
PAFMCHRR	8	Unmodified	_PAFMCHRR_					0	0	0		ENSG00000164256|ENST00000296682|PRDM9;ENSG00000126856|ENST00000449207|PRDM7	ENSG00000164256|ENST00000296682|PRDM9	ENSG00000164256|ENST00000296682|PRDM9	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.2798767089844	2	509.247106	1016.47966	-0.083675	-4.2611E-05	0.76776	0.00039098	0.68409	0.00034837	509.24697590316634	44.964	0.4972	42.255	42	42.497	-2.7097					10	9	2	0	0	0	0.028476	1	2610	2610		13.775	0	1	16029			41767	6438	34477	34501	45253	45253					-0.02792139835253238
PAFPRPLL	8	Unmodified	_PAFPRPLL_					0	0	0			REV__ENST00000392381.7_1_3:197024090-197024929:-|nuORF	REV__ENST00000392381.7_1_3:197024090-197024929:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	455.7004699707031	2	455.779088	909.543623	-0.64635	-0.00029459	0.79149	0.00036075	0.14514	6.6153E-05	455.7790832172466	66.171	0.86831	66.171	65.707	66.575	0					32	21	2	0	0	0	0.028476	1	6122	6122		20.482	0	1	261120	+		41768	25259	34478	34502	45254	45254					0.08523286864999591
PAGAGGAGG	9	Unmodified	_PAGAGGAGG_					0	0	0			REV__nc|ENSG00000055118|Q12809-5|KCNH2	REV__nc|ENSG00000055118|Q12809-5|KCNH2	MULTI-SECPEP	OvCa99_classI_Rep5	1	613.3461303710938	1	614.289265	613.281989	1.7654	0.0010845	-1.3838	-0.00085007	0.38161	0.00023442	614.2832278875155	135.03	0.17975	135.03	134.9	135.08	0					5	3	2	0	0	0	0.027462	1	15720	15720		8.8223	0	1	24551	+		41769	16707	34479	34503	45255	45255					-0.040121195019082734
PAGALGRSGP	10	Unmodified	_PAGALGRSGP_					0	0	0			REV__nc|ENSG00000120913|Q96JY6-5|PDLIM2	REV__nc|ENSG00000120913|Q96JY6-5|PDLIM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	441.20989990234375	2	441.743234	881.471915	-0.11699	-5.1677E-05	1.2822	0.00056639	1.1652	0.00051471	441.7428240005958	43.974	0.30003	43.974	43.823	44.123	0					11	6	2	0	0	0	0.026688	1	2932	2932		49.442	21.559	1	54531	+		41770	28819	34480	34504	45256	45256					0.02643747440470179
PAGALGRSGP	10	Unmodified	_PAGALGRSGP_					0	0	0			REV__nc|ENSG00000120913|Q96JY6-5|PDLIM2	REV__nc|ENSG00000120913|Q96JY6-5|PDLIM2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	441.743234	881.471915	0.99596	0.00043996	-0.84703	-0.00037417	0.14893	6.5791E-05	441.74267485910707	46.479	0.74454	43.77	43.497	44.242	-2.7097	-0.006137	-0.0010595	NaN	49.442	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42056	+		41771	28819	34480	34504							0.02643747440470179
PAGALRLQI	9	Unmodified	_PAGALRLQI_					0	0	0		nc|ENSG00000143382|Q6UY14-2|ADAMTSL4;ENSG00000143382|ENST00000271643|ADAMTSL4;nc|ENSG00000143382|Q6UY14-3|ADAMTSL4	nc|ENSG00000143382|Q6UY14-2|ADAMTSL4	nc|ENSG00000143382|Q6UY14-2|ADAMTSL4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	469.75201416015625	2	469.792727	937.5709	0.27023	0.00012695	0.81904	0.00038478	1.0893	0.00051173	469.7917440493334	69.028	0.4409	65.538	65.362	65.802	-3.4902					10	8	2	0	0	0	0.027462	1	5138	5138		24.203	5.8783	1	19174			41772	5046	34481	34505	45257	45257					0.09961770405368497
PAGARKKR	8	Unmodified	_PAGARKKR_					0	0	0		ENSG00000100078|ENST00000215885|PLA2G3	ENSG00000100078|ENST00000215885|PLA2G3	ENSG00000100078|ENST00000215885|PLA2G3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.7764587402344	2	442.28286	882.551168	0.24078	0.00010649	-4.289	-0.001897	-4.0483	-0.0017905	442.2796971200925	115.15	0.40618	113.75	113.51	113.92	-1.3977					9	7	2	0	0	0	0.028476	1	10696	10696		21.702	0	1	6317			41773	2003	34482	34506	45258	45258					0.10519439185270585
PAGAYPPAPLS	11	Unmodified	_PAGAYPPAPLS_					0	0	0			REV__ENSG00000272031|ENST00000606888|ANKRD34A	REV__ENSG00000272031|ENST00000606888|ANKRD34A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.2999267578125	2	520.7742	1039.53385	-1.4273	-0.00074329	-2.4791	-0.001291	-3.9064	-0.0020343	520.7721072348664	44.236	0.75586	41.229	40.989	41.745	-3.0074					23	14	2	0	0	0	0.025534	1	2229	2229		37.159	15.199	1	40933	+		41774	23612	34483	34507	45259	45259					0.01566054068939593
PAGCAFTLLLL	11	Unmodified	_PAGCAFTLLLL_					0	0	0		nc|ENSG00000189099|Q7RTY5-3|PRSS48;ENSG00000189099|ENST00000455694|PRSS48	nc|ENSG00000189099|Q7RTY5-3|PRSS48	nc|ENSG00000189099|Q7RTY5-3|PRSS48	MSMS	OvCa99_classI_Rep5	1	559.8169555664062	2	559.817553	1117.62055	NaN	NaN	NaN	NaN	NaN	NaN	NaN	155.04	1	155.04	154.54	155.54	0								0	0	0	0.19283	1	18167	18167		42.396	1.8235	1				41775	8534	34484	34508	45260	45260					0.06644717299172953
PAGDLQLVSV	10	Unmodified	_PAGDLQLVSV_					0	0	0			REV__ENSG00000179044|ENST00000314586|EXOC3L1	REV__ENSG00000179044|ENST00000314586|EXOC3L1	MULTI-MSMS	OvCa9_classI_Rep2	2	499.7804260253906	2	499.779482	997.544411	-4.7698	-0.0023838	3.461	0.0017297	-1.3088	-0.00065409	499.78130557298886	156.68	0.67896	156.45	156.24	156.92	-0.22696					21	15	2	0	0	0	0.81992	1	15942	15942		16.473	1.809	1	19629	+		41776	22095	34485	34509	45261	45261					0.04554036723379795
PAGDLQLVSV	10	Unmodified	_PAGDLQLVSV_					0	0	0			REV__ENSG00000179044|ENST00000314586|EXOC3L1	REV__ENSG00000179044|ENST00000314586|EXOC3L1	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	499.779482	997.544411	-4.7698	-0.0023838	3.461	0.0017297	-1.3088	-0.00065409	499.78130557298886	156.68	0.67896	156.45	156.24	156.92	-0.22696	0	0	NaN	16.473	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19629	+		41777	22095	34485	34509							0.04554036723379795
PAGELRVLCLR	11	Carbamidomethyl (C)	_PAGELRVLC(Carbamidomethyl (C))LR_	PAGELRVLC(1)LR		PAGELRVLC(46)LR		0	1	0			REV__ENST00000219334.9_1_16:68393500-68393875:-|nuORF	REV__ENST00000219334.9_1_16:68393500-68393875:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	642.363037109375	2	642.366264	1282.71798	-5.8793	-0.0037767	0.21458	0.00013784	-5.6648	-0.0036389	642.3674092585509	163.6	1.8703	163.37	162.72	164.59	-0.22696					197	63	5	0	0	0	0.58572	1	16704	16704		45.972	10.354	1	233960	+		41778	23734	34486	34510	45262	45262	279				0.08792499227979533
PAGELRVLCLR	11	Carbamidomethyl (C)	_PAGELRVLC(Carbamidomethyl (C))LR_					0	1	0			REV__ENST00000219334.9_1_16:68393500-68393875:-|nuORF	REV__ENST00000219334.9_1_16:68393500-68393875:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	642.366264	1282.71798	-5.8793	-0.0037767	0.21458	0.00013784	-5.6648	-0.0036389	642.3674092585509	163.6	1.8703	163.37	162.72	164.59	-0.22696	-0.087036	-0.00084384	NaN	45.972	197	63	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233960	+		41779	23734	34486	34510			279				0.08792499227979533
PAGELRVLCLR	11	Carbamidomethyl (C)	_PAGELRVLC(Carbamidomethyl (C))LR_					0	1	0			REV__ENST00000219334.9_1_16:68393500-68393875:-|nuORF	REV__ENST00000219334.9_1_16:68393500-68393875:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	642.366264	1282.71798	-6.1121	-0.0039262	1.3999	0.00089923	-4.7123	-0.003027	642.3669191719829	165.12	1.1669	163.48	162.9	164.07	-1.6405	0.021867	0.00067894	NaN	45.972	72	41	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69534	+		41780	23734	34486	34510			279				0.08792499227979533
PAGGLGSRLP	10	Unmodified	_PAGGLGSRLP_					0	0	0			REV__nc|ENSG00000186318|P56817-4|BACE1	REV__nc|ENSG00000186318|P56817-4|BACE1	MULTI-MSMS	OvCa9_classI_Rep2	2	462.76739501953125	2	462.766709	923.518865	-1.6143	-0.00074706	2.0664	0.00095627	0.45208	0.00020921	462.76749070870113	38.258	1.04	35.548	35.37	36.41	-2.7097					45	20	4	0	0	0	0.67931	1	1825	1825		32.812	0.85756	1	313510	+		41781	22575	34487	34511	45263	45263					0.054046069916125816
PAGGLGSRLP	10	Unmodified	_PAGGLGSRLP_					0	0	0			REV__nc|ENSG00000186318|P56817-4|BACE1	REV__nc|ENSG00000186318|P56817-4|BACE1	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.7683410644531	2	462.766709	923.518865	-0.092424	-4.2771E-05	0.83413	0.00038601	0.74171	0.00034324	462.7672213722957	38.259	1.2392	35.332	35.156	36.395	-2.9264					71	24	4	0	0	0	0.48198	1	1515	1515		56.721	0	1	1304900	+		41782	22575	34487	34511	45264	45264					0.054046069916125816
PAGKPWPA	8	Unmodified	_PAGKPWPA_					0	0	0		SAC3D1|p.F278Vfs*88|1|0.11|ENSG00000168061|chr11:65044342-65044343|-/AGTGTTTGGATATTTAGTAGAGACAG|frameshift_variant	SAC3D1|p.F278Vfs*88|1|0.11|ENSG00000168061|chr11:65044342-65044343|-/AGTGTTTGGATATTTAGTAGAGACAG|frameshift_variant	SAC3D1|p.F278Vfs*88|1|0.11|ENSG00000168061|chr11:65044342-65044343|-/AGTGTTTGGATATTTAGTAGAGACAG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.91162109375	2	412.226688	822.438824	0.57051	0.00023518	3.2657	0.0013462	3.8362	0.0015814	412.2279643523658	47.92	0.3484	47.92	47.812	48.16	0					12	7	2	0	0	0	0.028476	1	3470	3470		9.4706	0.64823	1	99894			41783	32797	34488	34512	45265	45265					0.02050165388413916
PAGKSPGLL	9	Unmodified	_PAGKSPGLL_					0	0	0			REV__nc|ENSG00000106344|Q9NW13-2|RBM28	REV__nc|ENSG00000106344|Q9NW13-2|RBM28	MULTI-MSMS	OvCa9_classI_Rep2	2	420.2525634765625	2	420.252903	838.491253	0.41101	0.00017273	-0.075014	-3.1525E-05	0.336	0.0001412	420.2527341495351	108.37	2.424	108.15	107.78	110.2	-0.22498					119	48	4	0	0	0	0.27546	1	10141	10141		65.803	2.4969	1	477420	+		41784	17797	34489	34513	45266	45266					0.06554703731376321
PAGKSPGLL	9	Unmodified	_PAGKSPGLL_					0	0	0			REV__nc|ENSG00000106344|Q9NW13-2|RBM28	REV__nc|ENSG00000106344|Q9NW13-2|RBM28	MULTI-MSMS	OvCa9_classI_Rep3	3	420.2524108886719	2	420.252903	838.491253	0.57551	0.00024186	-0.53085	-0.00022309	0.04466	1.8769E-05	420.25256475380445	109.42	2.3842	108.27	107.88	110.26	-1.1444					107	45	4	0	0	0	0.51865	1	7855	7855		40.778	0.20554	1	608560	+		41785	17797	34489	34513	45267	45267					0.06554703731376321
PAGLGTRVGP	10	Unmodified	_PAGLGTRVGP_					0	0	0			REV__PUM2|p.A453V|1|0.12|ENSG00000055917|chr2:20283420-20283420|G/A|missense_variant	REV__PUM2|p.A453V|1|0.12|ENSG00000055917|chr2:20283420-20283420|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.7680969238281	2	462.766709	923.518865	-0.092424	-4.2771E-05	0.83413	0.00038601	0.74171	0.00034324	462.7672213722957	38.259	1.2392	35.332	35.156	36.395	-2.9264					71	24	4	0	0	0	0.46756	1	1502	1502		58.782	7.4465	1	1304900	+		41786	29323	34490	34514	45268	45268					0.0540460699162395
PAGPRVYF	8	Unmodified	_PAGPRVYF_					0	0	0		ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	MULTI-SECPEP	OvCa99_classI_Rep5	1	454.22003173828125	2	453.745245	905.475937	-0.48353	-0.0002194	-3.7357	-0.0016951	-4.2193	-0.0019145	453.7432389429849	26.017	0.34894	26.017	25.893	26.242	0					14	6	4	0	0	0	0.028476	1	644	644		19.36	0	1	72948			41787	4665	34491	34515	45269	45269					0.01941836934179264
PAGQPKQTIP	10	Unmodified	_PAGQPKQTIP_					0	0	0			REV__ENSG00000136451|ENST00000581208|VEZF1	REV__ENSG00000136451|ENST00000581208|VEZF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.806396484375	2	518.792924	1035.57129	-0.072409	-3.7565E-05	0.08962	4.6494E-05	0.01721	8.9286E-06	518.7927764980424	61.205	1.2558	57.775	57.294	58.55	-3.43					35	25	2	0	0	0	0.026915	1	4245	4245		20.947	5.3051	1	159800	+		41788	19385	34492	34516	45270	45270					0.05493145334571636
PAGRKEGPRKF	11	Unmodified	_PAGRKEGPRKF_					0	0	0		ENST00000263918.8_1_2:37152256-37193400:-|nuORF	ENST00000263918.8_1_2:37152256-37193400:-|nuORF	ENST00000263918.8_1_2:37152256-37193400:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	414.9081726074219	3	414.907039	1241.69929	0.1872	7.7669E-05	2.1738	0.00090191	2.361	0.00097958	414.90826930033427	42.393	5.2268	42.393	42.024	47.251	0					261	119	6	0	0	0	0.49333	1	2776	2776		54.343	3.5521	1	57855000			41789	9920	34493	34517	45271	45271					0.08810705648443218
PAGRPIKIDL	10	Unmodified	_PAGRPIKIDL_					0	0	0			REV__ENST00000378533.3_1_X:38033574-38037570:-|nuORF	REV__ENST00000378533.3_1_X:38033574-38037570:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3309326171875	2	540.332216	1078.64988	0.34656	0.00018726	-4.1131	-0.0022225	-3.7666	-0.0020352	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.73378	1	13757	13757		26.693	2.4902	1	342200	+		41790	25142	34494	34518	45272	45272					0.11369997639667417
PAGSAIPGR	9	Unmodified	_PAGSAIPGR_					0	0	0		chr19:13954627-13955912|142|26.4|0.46|5.83|+|2|None,DCAF15|1	chr19:13954627-13955912|142|26.4|0.46|5.83|+|2|None,DCAF15|1	chr19:13954627-13955912|142|26.4|0.46|5.83|+|2|None,DCAF15|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	413.2688293457031	2	413.232502	824.450451	0.10972	4.5339E-05	-2.2791	-0.00094182	-2.1694	-0.00089648	413.23105047564286	41.882	0.17303	41.882	41.809	41.982	0					5	3	2	0	0	0	0.027433	1	2656	2656		23.042	0	1	33747			41791	403	34495	34519	45273	45273					0.03120362411766564
PAGSRRLAP	9	Unmodified	_PAGSRRLAP_					0	0	0		ENST00000464942.6_1_12:122710297-122710606:-|nuORF	ENST00000464942.6_1_12:122710297-122710606:-|nuORF	ENST00000464942.6_1_12:122710297-122710606:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.77264404296875	2	462.772326	923.530098	0.22356	0.00010346	-0.98816	-0.00045729	-0.7646	-0.00035384	462.7719192791278	37.709	0.99509	34.816	34.442	35.437	-2.8925					62	19	4	0	0	0	0.42676	1	1454	1454		49.442	5.3247	1	3768700			41792	12264	34496	34520	45274	45274					0.06527429085747372
PAGTLRIHA	9	Unmodified	_PAGTLRIHA_					0	0	0			REV__nc|ENSG00000135622|O95754-2|SEMA4F	REV__nc|ENSG00000135622|O95754-2|SEMA4F	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.7529602050781	2	468.274701	934.534849	-0.20818	-9.7483E-05	-0.071555	-3.3507E-05	-0.27973	-0.00013099	468.2744689798851	29.76	0.29886	29.76	29.636	29.935	0					9	5	2	0	0	0	0.027462	1	1099	1099		24.203	0	1	43448	+		41793	19305	34497	34521	45275	45275					0.06496313228512918
PAGVNLKT	8	Unmodified	_PAGVNLKT_					0	0	0			REV__ENSG00000124942|ENST00000378024|AHNAK	REV__ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep4_	4	400.2384033203125	2	400.237253	798.459953	1.2646	0.00050613	-0.77031	-0.00030831	0.49427	0.00019783	400.23682090212606	53.688	1.1757	50.44	50.109	51.285	-3.2474					39	22	2	0	0	0	0.70469	1	3293	3293		42.396	1.618	1	252350	+		41794	18711	34498	34522	45276	45276					0.052661306972822786
PAGVPIEFKL	10	Unmodified	_PAGVPIEFKL_					0	0	0		tr|A0A553SGY8|A0A553SGY8_NIACIQuinoloxidasesubunit2OS=NialliacirculansOX=1397GN=qoxAPE=3SV=1	tr|A0A553SGY8|A0A553SGY8_NIACIQuinoloxidasesubunit2OS=NialliacirculansOX=1397GN=qoxAPE=3SV=1	tr|A0A553SGY8|A0A553SGY8_NIACIQuinoloxidasesubunit2OS=NialliacirculansOX=1397GN=qoxAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.81494140625	2	535.815867	1069.61718	2.7682	0.0014832	-2.8489	-0.0015265	-0.08074	-4.3262E-05	535.8144246127898	133.06	1.2255	131.53	131.16	132.39	-1.5244					77	24	5	0	0	0	0.66721	1	12811	12811		34.173	0.65696	1	119770			41795	33209	34499	34523	45277	45277					0.08515790516798916
PAGWILSHLET	11	Unmodified	_PAGWILSHLET_					0	0	0		ENSG00000176340|ENST00000314133|COX8A	ENSG00000176340|ENST00000314133|COX8A	ENSG00000176340|ENST00000314133|COX8A	MULTI-MSMS	OvCa99_classI_Rep5	1	612.3257446289062	2	612.324588	1222.63462	1.0383	0.00063577	0.39007	0.00023885	1.4284	0.00087462	612.3246266396042	151.24	1.0931	151.24	150.69	151.79	0					63	21	5	0	0	0	0.3578	1	17695	17695		64.207	24.149	1	563350			41796	7599	34500	34524	45278	45278					0.032210860517807305
PAISGVTRR	9	Unmodified	_PAISGVTRR_					0	0	0		ENST00000405592.5_1_2:42981801-42981873:+|nuORF	ENST00000405592.5_1_2:42981801-42981873:+|nuORF	ENST00000405592.5_1_2:42981801-42981873:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	478.78546142578125	2	478.785433	955.556313	-2.4635	-0.0011795	2.3243	0.0011128	-0.13927	-6.6679E-05	478.7864521794397	145.79	1.5385	145.57	144.98	146.52	-0.22696					81	30	4	0	0	0	0.68424	1	14760	14760		21.96	5.4867	1	230950			41797	11467	34501	34525	45279	45279					0.07675698257230579
PAISYKAIAIS	11	Unmodified	_PAISYKAIAIS_					0	0	0		tr|A0A553SNJ3|A0A553SNJ3_NIACIBranched-chainaminoacidtransportsystemcarrierproteinOS=NialliacirculansOX=1397GN=brnQPE=3SV=1	tr|A0A553SNJ3|A0A553SNJ3_NIACIBranched-chainaminoacidtransportsystemcarrierproteinOS=NialliacirculansOX=1397GN=brnQPE=3SV=1	tr|A0A553SNJ3|A0A553SNJ3_NIACIBranched-chainaminoacidtransportsystemcarrierproteinOS=NialliacirculansOX=1397GN=brnQPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3273315429688	2	567.331882	1132.64921	-1.6483	-0.00093515	-2.1618	-0.0012264	-3.8101	-0.0021616	567.3305014697371	141.66	3.9446	141.43	139.35	143.3	-0.22697					200	79	3	0	0	0	0.69808	1	14208	14208		30.318	2.4355	1	83872			41798	33930	34502	34526	45280	45280					0.08819158199935373
PAIVAIVLAM	10	Unmodified	_PAIVAIVLAM_					0	0	0		tr|A0A7D6ZJP4|A0A7D6ZJP4_9CLOTCation-translocatingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09190PE=4SV=1	tr|A0A7D6ZJP4|A0A7D6ZJP4_9CLOTCation-translocatingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09190PE=4SV=1	tr|A0A7D6ZJP4|A0A7D6ZJP4_9CLOTCation-translocatingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09190PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.82525634765625	2	499.309364	996.604174	0.037433	1.869E-05	0.14146	7.0633E-05	0.17889	8.9324E-05	499.30997559964135	111.99	0.31625	110.48	110.32	110.63	-1.5111					7	5	2	0	0	0	0.027007	1	10335	10335		26.796	15.931	1	8430.3			41799	35648	34503	34527	45281	45281					0.10573636133051423
PAIYVLAPL	9	Unmodified	_PAIYVLAPL_					0	0	0			REV__ENST00000452150.6_1_6:131161525-131161600:-|nuORF	REV__ENST00000452150.6_1_6:131161525-131161600:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.29864501953125	2	478.794404	955.574254	-0.33109	-0.00015852	-3.0441	-0.0014575	-3.3751	-0.001616	478.79282141584184	52.634	0.35558	49.426	49.247	49.602	-3.208					11	6	2	0	0	0	0.027462	1	3152	3152		39.021	9.18	1	210520	+		41800	25977	34504	34528	45282	45282					0.09469020459368949
PAKEEEPTGW	10	Unmodified	_PAKEEEPTGW_					0	0	0		nc|ENSG00000090905|Q8NDV7-6|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A;nc|ENSG00000090905|Q8NDV7-2|TNRC6A	nc|ENSG00000090905|Q8NDV7-6|TNRC6A	nc|ENSG00000090905|Q8NDV7-6|TNRC6A	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.3137817382812	2	572.269478	1142.5244	1.0093	0.00057762	0.94002	0.00053794	1.9494	0.0011156	572.2720283608608	155.34	0.30634	155.34	155.22	155.53	0					7	5	2	0	0	0	0.026994	1	18215	18215		32.812	4.9302	1	16905			41801	1851	34505	34529	45283	45283					-0.041157590072543826
PAKPKPPSR	9	Unmodified	_PAKPKPPSR_					0	0	0		ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.2994079589844	2	489.298176	976.581799	-0.53933	-0.00026389	0.20433	9.9979E-05	-0.335	-0.00016391	489.29812618715977	46.129	1.2425	43.056	42.771	44.014	-3.0724					56	23	3	0	0	0	0.44568	1	2396	2396		47.657	3.5405	1	565190			41802	1662	34506	34530	45284	45284					0.0925717277965532
PAKPKPPSR	9	Unmodified	_PAKPKPPSR_					0	0	0		ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	489.298176	976.581799	0.16848	8.2438E-05	-0.5698	-0.0002788	-0.40132	-0.00019636	489.2978000025302	45.749	0.89899	43.039	42.797	43.696	-2.7097	-0.0085183	-0.00043412	NaN	47.657	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151430			41803	1662	34506	34530							0.0925717277965532
PAKQFLISP	9	Unmodified	_PAKQFLISP_					0	0	0		RCAN2|p.K141Nfs*2|1|0.12|ENSG00000172348|chr6:46246758-46246758|T/-|frameshift_variant;nc|ENSG00000172348|Q14206|RCAN2;ENSG00000172348|ENST00000371374|RCAN2	RCAN2|p.K141Nfs*2|1|0.12|ENSG00000172348|chr6:46246758-46246758|T/-|frameshift_variant	RCAN2|p.K141Nfs*2|1|0.12|ENSG00000172348|chr6:46246758-46246758|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	500.7944641113281	2	500.794935	999.575317	-0.44531	-0.00022301	-0.32042	-0.00016047	-0.76574	-0.00038348	500.79474539888093	109.47	3.7802	108.32	107.57	111.35	-1.1444					188	73	5	0	0	0	0.18193	1	7847	7847		79.451	5.4763	1	2461100			41804	7291	34507	34531	45285	45285					0.07551234828292763
PAKSILSAF	9	Unmodified	_PAKSILSAF_					0	0	0			REV__nc|ENSG00000068903|Q8IXJ6-5|SIRT2	REV__nc|ENSG00000068903|Q8IXJ6-5|SIRT2	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.2728271484375	2	467.273835	932.533118	0.94037	0.00043941	-3.9585	-0.0018497	-3.0182	-0.0014103	467.27187095407567	34.305	1.0512	31.517	31.249	32.301	-2.7881					38	20	3	0	0	0	0.58665	1	1003	1003		33.516	1.5607	1	80921	+		41805	16862	34508	34532	45286	45286					0.06415259419895847
PAKVAWKNV	9	Unmodified	_PAKVAWKNV_					0	0	0		ENST00000560051.1_1_14:103830578-103830779:-|nuORF	ENST00000560051.1_1_14:103830578-103830779:-|nuORF	ENST00000560051.1_1_14:103830578-103830779:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.8212585449219	2	506.800552	1011.58655	0.62306	0.00031577	-1.3782	-0.00069845	-0.7551	-0.00038269	506.79978337842107	111.28	0.79228	110.18	109.85	110.65	-1.1038					24	15	2	0	0	0	0.027462	1	8071	8071		21.96	6.3181	1	38184			41806	13726	34509	34533	45287	45287					0.08122056922411502
PALDRINSS	9	Unmodified	_PALDRINSS_					0	0	0		tr|A0A7D6VS62|A0A7D6VS62_9CLOTRibose-phosphatepyrophosphokinaseOS=ClostridiumintestinaleOX=36845GN=prsPE=3SV=1	tr|A0A7D6VS62|A0A7D6VS62_9CLOTRibose-phosphatepyrophosphokinaseOS=ClostridiumintestinaleOX=36845GN=prsPE=3SV=1	tr|A0A7D6VS62|A0A7D6VS62_9CLOTRibose-phosphatepyrophosphokinaseOS=ClostridiumintestinaleOX=36845GN=prsPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	485.77728271484375	2	486.759081	971.503609	-0.4424	-0.00021534	-1.9583	-0.00095321	-2.4007	-0.0011686	486.75847085693636	47.662	0.49467	44.952	44.786	45.281	-2.7097					12	9	3	0	0	0	0.027462	1	2910	2910		38.806	5.9937	1	7928.8			41807	34991	34510	34534	45288	45288					0.016716954037519827
PALFNIHL	8	Unmodified	_PALFNIHL_					0	0	0			REV__nc|ENSG00000164180|Q8NDZ6-2|TMEM161B	REV__nc|ENSG00000164180|Q8NDZ6-2|TMEM161B	MULTI-MSMS	OvCa9_classI_Rep2	2	462.76812744140625	2	462.76872	923.522887	-1.6143	-0.00074706	-2.28	-0.0010551	-3.8943	-0.0018022	462.76749070870113	38.258	1.04	35.548	35.37	36.41	-2.7097					45	20	4	0	0	0	0.72922	1	1793	1793		37.028	3.5129	1	313510	+		41808	20956	34511	34535	45289	45289					0.05806696485331031
PALFNIHL	8	Unmodified	_PALFNIHL_					0	0	0			REV__nc|ENSG00000164180|Q8NDZ6-2|TMEM161B	REV__nc|ENSG00000164180|Q8NDZ6-2|TMEM161B	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.7674865722656	2	462.76872	923.522887	-0.092423	-4.2771E-05	-3.5123	-0.0016254	-3.6047	-0.0016681	462.7672213722957	38.259	1.2392	35.332	35.156	36.395	-2.9264					71	24	4	0	0	0	0.72922	1	1527	1527		37.028	1.4102	1	1304900	+		41809	20956	34511	34535	45290	45290					0.05806696485331031
PALGILTR	8	Unmodified	_PALGILTR_					0	0	0		ENST00000467342.1_1_3:112738423-112807474:+|nuORF;ENST00000496389.5_1_3:112738423-112780791:+|nuORF	ENST00000467342.1_1_3:112738423-112807474:+|nuORF	ENST00000467342.1_1_3:112738423-112807474:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	421.7171630859375	2	420.76872	839.522887	0.35461	0.00014921	0.16931	7.1242E-05	0.52393	0.00022045	420.76881148683293	32.229	0.29747	32.229	32.055	32.353	0					8	5	2	0	0	0	0.028476	1	1400	1400		25.45	4.9683	1	30930			41810	12311	34512	34536	45291	45291					0.09670696485318331
PALHLLTPR	9	Unmodified	_PALHLLTPR_					0	0	0			REV__ENST00000294072.8_2_11:61116428-61116869:-|nuORF	REV__ENST00000294072.8_2_11:61116428-61116869:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.31201171875	2	509.313826	1016.6131	-2.7879	-0.0014199	-1.4575	-0.00074235	-4.2455	-0.0021623	509.3129934375174	149.78	1.2073	148.35	147.97	149.18	-1.4344					57	23	4	0	0	0	0.69895	1	14775	14775		18.324	0.95945	1	218320	+		41811	24178	34513	34537	45292	45292					0.10545745813749363
PALHPHVHLL	10	Unmodified	_PALHPHVHLL_					0	0	0		ENST00000231706.5_1_3:170198310-170198370:-|nuORF	ENST00000231706.5_1_3:170198310-170198370:-|nuORF	ENST00000231706.5_1_3:170198310-170198370:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	567.33056640625	2	567.33255	1132.65055	-2.3399	-0.0013275	-2.5474	-0.0014452	-4.8872	-0.0027727	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.73286	1	14675	14675		26.796	4.8362	1	241060			41812	9726	34514	34538	45293	45293					0.08952837079368692
PALKEPKTAVL	11	Unmodified	_PALKEPKTAVL_					0	0	0			REV__nc|ENSG00000158623|Q9UBF2-2|COPG2	REV__nc|ENSG00000158623|Q9UBF2-2|COPG2	MULTI-MSMS	OvCa9_classI_Rep2	2	583.8583984375	2	583.860806	1165.70706	-4.259	-0.0024867	1.0102	0.0005898	-3.2489	-0.0018969	583.8612282732444	154.9	1.2136	154.67	154.34	155.56	-0.22696					82	33	4	0	0	0	0.72485	1	15792	15792		17.468	0.10304	1	148650	+		41813	20575	34515	34539	45294	45294					0.13083420125371958
PALKLVRH	8	Unmodified	_PALKLVRH_					0	0	0		ENST00000379883.2_1_9:32526189-32526261:-|nuORF	ENST00000379883.2_1_9:32526189-32526261:-|nuORF	ENST00000379883.2_1_9:32526189-32526261:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	467.2991943359375	2	467.303262	932.59197	-3.7913	-0.0017717	-0.79059	-0.00036945	-4.5819	-0.0021411	467.30283207827034	147.81	1.3484	146.86	146.5	147.85	-0.9512					67	26	4	0	0	0	0.75915	1	12459	12459		20.482	0	1	258480			41814	11135	34516	34540	45295	45295					0.12297780504889033
PALKLVRH	8	Unmodified	_PALKLVRH_					0	0	0		ENST00000379883.2_1_9:32526189-32526261:-|nuORF	ENST00000379883.2_1_9:32526189-32526261:-|nuORF	ENST00000379883.2_1_9:32526189-32526261:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.3000183105469	2	467.303262	932.59197	-1.8409	-0.00086028	-2.653	-0.0012397	-4.4939	-0.0021	467.30195282681905	148.29	1.8981	146.85	146.48	148.37	-1.435					87	38	4	0	0	0	0.75991	1	14579	14579		21.702	0	1	733350			41815	11135	34516	34540	45296	45296					0.12297780504889033
PALLKIAR	8	Unmodified	_PALLKIAR_					0	0	0		ENST00000358127.8_1_9:36840226-36840553:-|nuORF	ENST00000358127.8_1_9:36840226-36840553:-|nuORF	ENST00000358127.8_1_9:36840226-36840553:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	441.3000183105469	2	441.300188	880.585822	0.76676	0.00033837	-0.75246	-0.00033206	0.014297	6.3091E-06	441.2997389650203	59.875	1.5174	57.105	56.672	58.19	-2.7702					74	28	4	0	0	0	0.60486	2	4391	4391;4397		62.978	2.6845	1	516130			41816	10729	34517	34541	45297;45298	45297					0.14075262273365752
PALLLPKVL	9	Unmodified	_PALLLPKVL_					0	0	0			REV__ENST00000332598.6_1_5:177022592-177022790:+|nuORF	REV__ENST00000332598.6_1_5:177022592-177022790:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	482.3027648925781	2	482.333696	962.652839	1.3227	0.00063796	-1.4287	-0.00068912	-0.10607	-5.1162E-05	482.33277050515386	122.29	0.7344	121.26	121.01	121.74	-1.0286					14	13	2	0	0	0	0.027462	1	9379	9379		18.324	10.093	1	11085	+		41817	24548	34518	34542	45299	45299					0.17001872764456039
PALLLPKVL	9	Unmodified	_PALLLPKVL_					0	0	0			REV__ENST00000332598.6_1_5:177022592-177022790:+|nuORF	REV__ENST00000332598.6_1_5:177022592-177022790:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	482.333696	962.652839	-1.0356	-0.00049951	0.64507	0.00031114	-0.39053	-0.00018837	482.3337857733994	121.26	0.44453	121.06	120.85	121.3	-0.19718	-0.12249	0.0012427	NaN	12.207	13	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7602.1	+		41818	24548	34518	34542							0.17001872764456039
PALLTRLL	8	Unmodified	_PALLTRLL_					0	0	0		nc|ENSG00000167889|Q3V5L5-2|MGAT5B	nc|ENSG00000167889|Q3V5L5-2|MGAT5B	nc|ENSG00000167889|Q3V5L5-2|MGAT5B	MULTI-MSMS	OvCa9_classI_Rep4_	4	448.79925537109375	2	448.80002	895.585488	-0.92415	-0.00041476	0.78799	0.00035365	-0.13616	-6.1108E-05	448.8002911925649	119.74	1.6635	118.39	117.98	119.65	-1.3444					91	31	4	0	0	0	0.57878	1	11258	11258		68.485	10.673	1	858030			41819	15162	34519	34543	45300	45300					0.1335184255351578
PALNRSALN	9	Unmodified	_PALNRSALN_					0	0	0			REV__ENST00000568310.1_1_15:55677902-55790527:-|nuORF	REV__ENST00000568310.1_1_15:55677902-55790527:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	478.2716369628906	2	478.269616	954.524678	-1.3886	-0.00066411	1.3494	0.00064538	-0.039152	-1.8725E-05	478.27019835136235	52.183	1.4338	49.37	48.996	50.43	-2.8129					64	28	3	0	0	0	0.38969	1	3475	3475		52.937	5.2794	1	296780	+		41820	23534	34520	34544	45301	45301					0.04559705503265832
PALPGRNSL	9	Unmodified	_PALPGRNSL_					0	0	0			REV__EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant	REV__EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	462.768310546875	2	462.766709	923.518865	-1.6143	-0.00074706	2.0664	0.00095627	0.45208	0.00020921	462.76749070870113	38.258	1.04	35.548	35.37	36.41	-2.7097					45	20	4	0	0	0	0.33652	1	1799	1799		58.782	1.3293	1	313510	+		41821	18000	34521	34545	45302	45302					0.054046069916125816
PALSLRGILTL	11	Unmodified	_PALSLRGILTL_					0	0	0		ENSG00000197977|ENST00000354666|ELOVL2	ENSG00000197977|ENST00000354666|ELOVL2	ENSG00000197977|ENST00000354666|ELOVL2	MULTI-MSMS	OvCa9_classI_Rep2	2	577.3674926757812	2	577.368798	1152.72304	-5.5665	-0.0032139	2.1457	0.0012388	-3.4208	-0.0019751	577.369928690125	160.74	1.397	160.51	160.13	161.53	-0.22696					95	27	5	0	0	0	0.70142	1	16352	16352		29.17	6.1276	1	1195800			41822	8770	34522	34546	45303	45303					0.1527912636227029
PALSPRLPPA	10	Unmodified	_PALSPRLPPA_					0	0	0			REV__ENST00000292539.8_1_8:145722273-145722696:+|nuORF	REV__ENST00000292539.8_1_8:145722273-145722696:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	509.8034362792969	2	509.805834	1017.59712	-1.3099	-0.00066782	-2.9211	-0.0014892	-4.231	-0.002157	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.65434	1	11229	11229		35.618	6.4687	1	99460	+		41823	24162	34523	34547	45304	45304					0.08902039576832976
PALSQKPSPLL	11	Unmodified	_PALSQKPSPLL_					0	0	0		ENST00000378598.4_1_1:1849323-1850689:-|nuORF;nc|ENSG00000178821|Q8NDY8-2|TMEM52;ENSG00000178821|ENST00000310991|TMEM52	ENST00000378598.4_1_1:1849323-1850689:-|nuORF	ENST00000378598.4_1_1:1849323-1850689:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8432006835938	2	575.845156	1149.67576	-4.018	-0.0023138	0.54994	0.00031668	-3.4681	-0.0019971	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.70142	1	12187	12187		29.17	0.020503	1	445630			41824	7780	34524	34548	45305	45305					0.10690847091291289
PALSQKPSPLL	11	Unmodified	_PALSQKPSPLL_					0	0	0		ENST00000378598.4_1_1:1849323-1850689:-|nuORF;nc|ENSG00000178821|Q8NDY8-2|TMEM52;ENSG00000178821|ENST00000310991|TMEM52	ENST00000378598.4_1_1:1849323-1850689:-|nuORF	ENST00000378598.4_1_1:1849323-1850689:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8430786132812	2	575.845156	1149.67576	-1.5734	-0.00090602	-1.7064	-0.00098265	-3.2798	-0.0018887	575.8439449675558	145.55	4.7888	144.12	142.78	147.57	-1.4357					360	93	6	0	0	0	0.70761	1	14486	14486		27.047	0	1	565210			41825	7780	34524	34548	45306	45306					0.10690847091291289
PALSRVRGT	9	Unmodified	_PALSRVRGT_					0	0	0			REV__ENST00000476548.1_1_22:37168757-37172063:-|nuORF	REV__ENST00000476548.1_1_22:37168757-37172063:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	478.7850341796875	2	478.785433	955.556313	-2.4635	-0.0011795	2.3243	0.0011128	-0.13927	-6.6679E-05	478.7864521794397	145.79	1.5385	145.57	144.98	146.52	-0.22696					81	30	4	0	0	0	0.63422	1	14678	14678		27.882	0	1	230950	+		41826	26294	34525	34549	45307	45307					0.07675698257230579
PALSTALLQL	10	Unmodified	_PALSTALLQL_					0	0	0		nc|ENSG00000161847|Q8IY67|RAVER1;nc|ENSG00000161847|Q8IY67-2|RAVER1;ENSG00000161847|ENST00000617231|RAVER1;ENST00000592208.5_1_19:10433104-10439782:-|nuORF	nc|ENSG00000161847|Q8IY67|RAVER1	nc|ENSG00000161847|Q8IY67|RAVER1	MULTI-MSMS	OvCa9_classI_Rep2	2	513.8130493164062	2	513.813325	1025.6121	0.034126	1.7535E-05	-0.62139	-0.00031928	-0.58727	-0.00030175	513.812915073237	95.614	2.7183	94.586	93.824	96.542	-1.0281					131	54	4	0	0	0	0.10076	2	8597	8597;8608		113.41	11.811	1	975360			41827	6140	34526	34550	45308;45309	45308					0.10031486654202126
PALSTALLQL	10	Unmodified	_PALSTALLQL_					0	0	0		nc|ENSG00000161847|Q8IY67|RAVER1;nc|ENSG00000161847|Q8IY67-2|RAVER1;ENSG00000161847|ENST00000617231|RAVER1;ENST00000592208.5_1_19:10433104-10439782:-|nuORF	nc|ENSG00000161847|Q8IY67|RAVER1	nc|ENSG00000161847|Q8IY67|RAVER1	MULTI-MSMS	OvCa9_classI_Rep3	3	513.814208984375	2	513.813325	1025.6121	-0.52087	-0.00026763	0.12081	6.2073E-05	-0.40006	-0.00020556	513.8133179520387	96.39	1.8725	94.561	93.78	95.652	-1.8286					114	36	4	0	0	0	0.10076	1	6337	6337		113.41	0	1	1310500			41828	6140	34526	34550	45310	45310					0.10031486654202126
PALSTALLQL	10	Unmodified	_PALSTALLQL_					0	0	0		nc|ENSG00000161847|Q8IY67|RAVER1;nc|ENSG00000161847|Q8IY67-2|RAVER1;ENSG00000161847|ENST00000617231|RAVER1;ENST00000592208.5_1_19:10433104-10439782:-|nuORF	nc|ENSG00000161847|Q8IY67|RAVER1	nc|ENSG00000161847|Q8IY67|RAVER1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	513.813325	1025.6121	2.4923	0.0012806	-0.41577	-0.00021363	2.0765	0.0010669	513.8128799729873	94.421	0.5535	94.421	94.094	94.648	0	-0.10367	0.00028749	NaN	113.41	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	385150			41829	6140	34526	34550							0.10031486654202126
PALSTALLQL	10	Unmodified	_PALSTALLQL_					0	0	0		nc|ENSG00000161847|Q8IY67|RAVER1;nc|ENSG00000161847|Q8IY67-2|RAVER1;ENSG00000161847|ENST00000617231|RAVER1;ENST00000592208.5_1_19:10433104-10439782:-|nuORF	nc|ENSG00000161847|Q8IY67|RAVER1	nc|ENSG00000161847|Q8IY67|RAVER1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	513.813325	1025.6121	0.93101	0.00047837	-1.3285	-0.00068262	-0.39753	-0.00020426	513.8125774652506	96.957	2.6251	94.531	93.811	96.436	-2.4256	0.0065765	-0.0006505	NaN	113.41	151	51	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1360300			41830	6140	34526	34550							0.10031486654202126
PALTGPRLRR	10	Unmodified	_PALTGPRLRR_					0	0	0			REV__nc|ENSG00000189157|Q6ZV65-1|FAM47E	REV__nc|ENSG00000189157|Q6ZV65-1|FAM47E	MULTI-MSMS	OvCa9_classI_Rep2	2	568.8543701171875	2	568.854181	1135.69381	-5.375	-0.0030576	4.3783	0.0024906	-0.99679	-0.00056703	568.8565433281535	160.72	1.3933	160.5	160.18	161.57	-0.22696					89	27	5	0	0	0	0.73378	1	16377	16377		26.693	2.1737	1	747650	+		41831	22766	34527	34551	45311	45311					0.1313902685665198
PALVIPEV	8	Unmodified	_PALVIPEV_					0	0	0		ENSG00000148840|ENST00000278070|PPRC1;nc|ENSG00000148840|Q5VV67-2|PPRC1	ENSG00000148840|ENST00000278070|PPRC1	ENSG00000148840|ENST00000278070|PPRC1	MULTI-SECPEP	OvCa9_classI_Rep2	2	419.1983337402344	2	419.257654	836.500755	-0.57842	-0.00024251	-2.469	-0.0010351	-3.0474	-0.0012776	419.256563677228	49.308	1.4868	46.547	46.127	47.614	-2.7603					35	29	2	0	0	0	0.028476	1	3183	3183		8.8223	0	1	25391			41832	5427	34528	34552	45312	45312					0.0759647201689404
PALVPRAKR	9	Unmodified	_PALVPRAKR_					0	0	0		ENST00000601438.2_1_19:47724101-47724386:-|nuORF	ENST00000601438.2_1_19:47724101-47724386:-|nuORF	ENST00000601438.2_1_19:47724101-47724386:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	504.3269348144531	2	504.327268	1006.63998	-0.87551	-0.00044155	-0.01701	-8.5788E-06	-0.89252	-0.00045012	504.3273117553292	26.667	1.3488	26.667	26.442	27.791	0					75	26	5	0	0	0	0.44294	1	763	763		47.916	15.961	1	5633300			41833	14225	34529	34553	45313	45313					0.13692854424937195
PALWRWLLL	9	Unmodified	_PALWRWLLL_					0	0	0		COL4A2|p.R14W|1|0.4|ENSG00000134871|chr13:110307943-110307943|C/T|missense_variant	COL4A2|p.R14W|1|0.4|ENSG00000134871|chr13:110307943-110307943|C/T|missense_variant	COL4A2|p.R14W|1|0.4|ENSG00000134871|chr13:110307943-110307943|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3565063476562	2	584.355494	1166.69644	-1.7162	-0.0010029	3.3454	0.0019549	1.6292	0.00095203	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.6959	1	14373	14373		19.36	2.8868	1	833330			41834	595	34530	34554	45314	45314					0.11975482261595971
PAMKGSKRL	9	Unmodified	_PAMKGSKRL_					0	0	0			REV__ENST00000264501.8_2_4:123274283-123275004:+|nuORF	REV__ENST00000264501.8_2_4:123274283-123275004:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.7988586425781	2	494.292037	986.56952	1.0573	0.0005226	0.20554	0.0001016	1.2628	0.0006242	494.29211145628693	36.16	0.49991	33.311	33.139	33.639	-2.849					16	9	3	0	0	0	0.027462	1	1205	1205		20.947	0	1	39995	+		41835	24017	34531	34555	45315	45315					0.07569813044960938
PAMSVAYL	8	Unmodified	_PAMSVAYL_					0	0	0			REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	MULTI-MSMS	OvCa99_classI_Rep5	1	426.2202453613281	2	426.220214	850.425876	2.5462	0.0010852	-4.2815	-0.0018249	-1.7353	-0.00073961	426.21825273805905	84.739	1.2773	84.739	84.472	85.75	0					60	30	4	0	0	0	0.49583	1	8881	8881		77.944	8.8509	1	4099900	+		41836	19117	34532	34556	45316	45316					-0.005320337859757274
PANLERVIVL	10	Unmodified	_PANLERVIVL_					0	0	0		nc|ENSG00000133424|O95461-2|LARGE1;ENSG00000133424|ENST00000397394|LARGE1;ENST00000476315.1_1_22:33959226-33960957:-|nuORF;LARGE-OPA3|1|fusion;LARGE-OPA3|2|fusion	nc|ENSG00000133424|O95461-2|LARGE1	nc|ENSG00000133424|O95461-2|LARGE1	MULTI-MSMS	OvCa9_classI_Rep2	2	562.343505859375	2	562.345323	1122.67609	-1.142	-0.00064221	-2.621	-0.0014739	-3.7631	-0.0021161	562.3438081477608	141.84	4.7959	141.62	140.24	145.03	-0.22697					133	96	2	0	0	0	0.73378	1	14423	14423		26.693	1.2427	1	113870			41837	4221	34533	34557	45317	45317					0.11966266811123205
PAPAKLVL	8	Unmodified	_PAPAKLVL_					0	0	0		ENST00000531778.1_1_11:134250299-134250536:-|nuORF	ENST00000531778.1_1_11:134250299-134250536:-|nuORF	ENST00000531778.1_1_11:134250299-134250536:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.5511169433594	2	404.768189	807.521825	0.90483	0.00036625	-3.9626	-0.0016039	-3.0578	-0.0012377	404.76652331590606	39.129	0.26988	39.129	39.017	39.287	0					7	5	2	0	0	0	0.028476	1	2269	2269		20.482	4.8456	1	55810			41838	13311	34534	34558	45318	45318					0.11036482116412571
PAPALPCSII	10	Unmodified	_PAPALPCSII_					0	0	0		ENST00000374612.5_1_1:23667485-23670726:-|nuORF	ENST00000374612.5_1_1:23667485-23670726:-|nuORF	ENST00000374612.5_1_1:23667485-23670726:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	491.2773742675781	2	491.275521	980.536489	-0.28614	-0.00014057	4.0565	0.0019928	3.7703	0.0018523	491.2773086839078	48.84	1.1389	46.079	45.779	46.918	-2.7603					48	22	3	0	0	0	0.56767	1	3078	3078		45.952	8.7928	1	137360			41839	11040	34535	34559	45319	45319					0.045441862022585156
PAPAVPRPM	9	Unmodified	_PAPAVPRPM_					0	0	0			REV__ENST00000259400.10_2_9:102668917-102677517:+|nuORF	REV__ENST00000259400.10_2_9:102668917-102677517:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	467.2686462402344	2	468.260205	934.505857	0.18686	8.7498E-05	1.7072	0.0007994	1.894	0.0008869	468.26128195649363	22.116	1.0608	20.777	20.422	21.483	-1.3386					38	21	2	0	0	0	0.027462	1	297	297		31.955	7.7521	1	17831	+		41840	23918	34536	34560	45320	45320					0.03598452607877789
PAPDRETP	8	Unmodified	_PAPDRETP_					0	0	0		ENST00000454580.7_1_19:38755449-38755554:+|nuORF	ENST00000454580.7_1_19:38755449-38755554:+|nuORF	ENST00000454580.7_1_19:38755449-38755554:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.7194519042969	2	441.719424	881.424296	-0.53873	-0.00023797	0.61004	0.00026946	0.071309	3.1498E-05	441.7197250465994	46.824	0.6685	43.752	43.552	44.221	-3.0724					13	12	2	0	0	0	0.028476	1	2457	2457		31.955	0	1	15913			41841	12088	34537	34561	45321	45321					-0.02115951550376849
PAPHPAPAL	9	Unmodified	_PAPHPAPAL_					0	0	0			REV__ENST00000260403.6_1_15:43425851-43425908:+|nuORF	REV__ENST00000260403.6_1_15:43425851-43425908:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	435.74652099609375	2	435.745245	869.475937	0.16835	7.3358E-05	0.90583	0.00039471	1.0742	0.00046807	435.7451699754619	56.218	2.2321	52.924	52.16	54.392	-3.2944					132	43	5	0	0	0	0.14417	3	3555	3555;3593;3603		85.909	21.382	1	640710	+		41842	23926	34538	34562	45322;45323;45324	45322					0.03597836934170573
PAPPELRTG	9	Unmodified	_PAPPELRTG_					0	0	0			REV__nc|ENSG00000196083|Q9NPH3-5|IL1RAP	REV__nc|ENSG00000196083|Q9NPH3-5|IL1RAP	MSMS	OvCa99_classI_Rep5	1	469.2566833496094	2	469.258717	936.50288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.829	1	22.829	22.329	23.329	0								0	0	0	0.23988	1	259	259		19.997	3.5236	1		+		41843	29071	34539	34563	45325	45325					0.032089007547028814
PAPPGRYL	8	Unmodified	_PAPPGRYL_					0	0	0		ENSG00000260428|ENST00000567180|SCX	ENSG00000260428|ENST00000567180|SCX	ENSG00000260428|ENST00000567180|SCX	MULTI-MSMS	OvCa9_classI_Rep4_	4	435.7463684082031	2	435.745245	869.475937	0.16835	7.3358E-05	0.90583	0.00039471	1.0742	0.00046807	435.7451699754619	56.218	2.2321	52.924	52.16	54.392	-3.2944					132	43	5	0	0	0	0.49583	2	3565	3565;3579		77.944	5.4938	1	640710			41844	9492	34540	34564	45326;45327	45326					0.03597836934170573
PAPPHPGLP	9	Unmodified	_PAPPHPGLP_					0	0	0		ENST00000409280.5_1_7:25219691-25219886:-|nuORF	ENST00000409280.5_1_7:25219691-25219886:-|nuORF	ENST00000409280.5_1_7:25219691-25219886:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.7194519042969	2	441.745245	881.475937	-0.62973	-0.00027818	-3.7175	-0.0016422	-4.3472	-0.0019204	441.74348016815225	46.656	1.1745	43.583	43.294	44.468	-3.0724					55	22	3	0	0	0	0.02744	1	2457	2457		49.211	10.189	1	223820			41845	11521	34541	34565	45328	45328					0.030458369341772595
PAPREPLLGI	10	Unmodified	_PAPREPLLGI_					0	0	0			REV__ENST00000393370.6_1_9:131873622-131873724:+|nuORF	REV__ENST00000393370.6_1_9:131873622-131873724:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8170166015625	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.62299	1	11555	11555		39.253	0.44669	1	178650	+		41846	25279	34542	34566	45329	45329					0.09498308748334239
PAPSLETLSCF	11	Unmodified	_PAPSLETLSCF_					0	0	0			REV__ENST00000266069.4_1_20:61577009-61577477:+|nuORF	REV__ENST00000266069.4_1_20:61577009-61577477:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.329833984375	2	582.783907	1163.55326	0.46446	0.00027068	-1.6084	-0.00093732	-1.1439	-0.00066664	582.7830323624664	158.72	0.4205	158.72	158.37	158.79	0					12	8	2	0	0	0	0.025416	1	18608	18608		26.693	0	1	40223	+		41847	24041	34543	34567	45330	45330					-0.02197357702470981
PAPSSLPILGS	11	Unmodified	_PAPSSLPILGS_					0	0	0		ENST00000368347.8_1_1:155294072-155294639:+|nuORF	ENST00000368347.8_1_1:155294072-155294639:+|nuORF	ENST00000368347.8_1_1:155294072-155294639:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.8203735351562	2	519.795132	1037.57571	0.10192	5.2979E-05	-1.1925	-0.00061984	-1.0905	-0.00056686	519.794479478112	132.55	0.19821	131.42	131.29	131.49	-1.1249					5	3	2	0	0	0	0.025746	1	10610	10610		32.812	1.2826	1	6766			41848	10868	34544	34568	45331	45331					0.05842609757473838
PAPTRAPAP	9	Unmodified	_PAPTRAPAP_					0	0	0			REV__ENST00000582478.5_1_17:80008786-80009642:-|nuORF	REV__ENST00000582478.5_1_17:80008786-80009642:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	439.24774169921875	2	439.248152	876.481751	-0.24789	-0.00010888	0.38414	0.00016873	0.13626	5.985E-05	439.2481798597059	51.725	1.6844	48.913	48.203	49.888	-2.8129					75	33	4	0	0	0	0.56889	1	3409	3409		35.618	2.1027	1	208270	+		41849	21479	34545	34569	45332	45332					0.03856935445844556
PAPVPAVPPAP	11	Unmodified	_PAPVPAVPPAP_					0	0	0			REV__nc|ENSG00000099995|Q15459-2|SF3A1	REV__nc|ENSG00000099995|Q15459-2|SF3A1	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.3316650390625	2	506.794935	1011.57532	-1.0025	-0.00050805	-3.7221	-0.0018863	-4.7246	-0.0023944	506.79299842487626	57.13	0.89165	54.338	53.881	54.773	-2.7921					41	17	3	0	0	0	0.025902	1	4009	4009		24.203	1.1603	1	48309	+		41850	17351	34546	34570	45333	45333					0.06999234828265344
PAQSAARLLL	10	Unmodified	_PAQSAARLLL_					0	0	0			REV__ENST00000341846.9_1_11:120008080-120008518:-|nuORF	REV__ENST00000341846.9_1_11:120008080-120008518:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.2999267578125	2	520.316566	1038.61858	-1.4167	-0.00073712	-0.44934	-0.0002338	-1.866	-0.00097092	520.3161252727361	44.136	0.9066	41.128	40.94	41.847	-3.0074					26	17	2	0	0	0	0.026931	1	2229	2229		30.318	0	1	50193	+		41851	24639	34547	34571	45334	45334					0.10081424605550637
PAQVWMYRLLL	11	Unmodified	_PAQVWMYRLLL_					0	0	0		ENST00000314393.5_1_8:123794011-123875742:+|nuORF	ENST00000314393.5_1_8:123794011-123875742:+|nuORF	ENST00000314393.5_1_8:123794011-123875742:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	463.23590087890625	3	463.928564	1388.76386	0.2372	0.00011004	2.4556	0.0011392	2.6928	0.0012493	463.9296299970578	58.173	0.87946	58.173	57.609	58.488	0					50	20	5	0	0	0	0.025911	1	4903	4903		25.126	6.5949	1	2194800			41852	10323	34548	34572	45335	45335					0.08503144410246932
PARDGPRPSQP	11	Unmodified	_PARDGPRPSQP_					0	0	0			REV__ENSG00000188869|ENST00000359440|TMC3	REV__ENSG00000188869|ENST00000359440|TMC3	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.30419921875	2	589.307261	1176.59997	-0.12482	-7.3557E-05	-2.7483	-0.0016196	-2.8731	-0.0016931	589.3055291110799	123.33	1.8558	121.96	121.56	123.41	-1.3666					82	36	4	0	0	0	0.68399	1	11686	11686		35.152	2.3396	1	145490	+		41853	22745	34549	34573	45336	45336					0.01873262963704292
PARGRPRGLL	10	Unmodified	_PARGRPRGLL_					0	0	0		ENST00000371437.4_1_X:119005607-119005844:+|nuORF	ENST00000371437.4_1_X:119005607-119005844:+|nuORF	ENST00000371437.4_1_X:119005607-119005844:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	546.8401489257812	2	546.841074	1091.66759	-4.8246	-0.0026383	3.4883	0.0019075	-1.3363	-0.00073075	546.8429110027589	158.57	1.287	158.34	158.06	159.35	-0.22697					77	26	5	0	0	0	0.72319	1	16136	16136		27.882	0	1	487190			41854	10955	34550	34574	45337	45337					0.12542757685173456
PARIQLIF	8	Unmodified	_PARIQLIF_					0	0	0		nc|ENSG00000075856|Q15020-4|SART3;ENSG00000075856|ENST00000546815|SART3;nc|ENSG00000075856|Q15020-2|SART3;SART3|p.L611Ffs*17|1|0.08|ENSG00000075856|chr12:108530224-108530225|-/G|frameshift_variant	nc|ENSG00000075856|Q15020-4|SART3	nc|ENSG00000075856|Q15020-4|SART3	MULTI-MSMS	OvCa9_classI_Rep2	2	479.2972106933594	2	479.297645	956.580737	-0.75064	-0.00035978	0.51879	0.00024865	-0.23185	-0.00011113	479.29773010897736	115.4	1.335	115.29	115	116.33	-0.11777					67	26	3	0	0	0	0.7043	3	10996	10996;11027;11034		42.474	0	1	535680			41855	1544	34551	34575	45338;45339;45340	45338					0.10070958410756248
PARIQLIF	8	Unmodified	_PARIQLIF_					0	0	0		nc|ENSG00000075856|Q15020-4|SART3;ENSG00000075856|ENST00000546815|SART3;nc|ENSG00000075856|Q15020-2|SART3;SART3|p.L611Ffs*17|1|0.08|ENSG00000075856|chr12:108530224-108530225|-/G|frameshift_variant	nc|ENSG00000075856|Q15020-4|SART3	nc|ENSG00000075856|Q15020-4|SART3	MULTI-MSMS	OvCa9_classI_Rep3	3	479.2976379394531	2	479.297645	956.580737	-0.26237	-0.00012575	0.061204	2.9335E-05	-0.20117	-9.6419E-05	479.29752817551383	116.42	1.3352	115.38	115	116.33	-1.0414					70	26	3	0	0	0	0.7043	1	8712	8712		42.474	0	1	529340			41856	1544	34551	34575	45341	45341					0.10070958410756248
PARKEKTKV	9	Unmodified	_PARKEKTKV_					0	0	0		ENST00000497437.1_1_1:43279512-43282215:-|nuORF;ENSG00000177868|ENST00000372521|SVBP	ENST00000497437.1_1_1:43279512-43282215:-|nuORF	ENST00000497437.1_1_1:43279512-43282215:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.3139038085938	2	528.82984	1055.64513	-0.6072	-0.00032111	-0.92245	-0.00048782	-1.5296	-0.00080892	528.8287753438427	74.642	1.2271	72.231	71.846	73.073	-2.4106					74	24	5	0	0	0	0.027462	1	3695	3695		45.972	11.8	1	116980			41857	12805	34552	34576	45342	45342					0.11953113496883816
PARKGSYV	8	Unmodified	_PARKGSYV_					0	0	0		ENSG00000188779|ENST00000380035|SKOR1;nc|ENSG00000188779|P84550-3|SKOR1	ENSG00000188779|ENST00000380035|SKOR1	ENSG00000188779|ENST00000380035|SKOR1	MULTI-MSMS	OvCa9_classI_Rep4_	4	439.2481689453125	2	439.248152	876.481751	-0.22416	-9.8464E-05	-0.0026512	-1.1645E-06	-0.22682	-9.9628E-05	439.24807436031745	51.881	2.0555	48.707	47.872	49.928	-3.1734					117	40	4	0	0	0	0.53531	1	3093	3093		73.975	10.668	1	1269500			41858	8500	34553	34577	45343	45343					0.038569354458559246
PARKYMHWL	9	Unmodified	_PARKYMHWL_					0	0	0		ENST00000306156.7_1_2:45878956-45879109:+|nuORF	ENST00000306156.7_1_2:45878956-45879109:+|nuORF	ENST00000306156.7_1_2:45878956-45879109:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	400.2384033203125	3	401.214816	1200.62262	1.1934	0.00047879	1.1305	0.00045356	2.3238	0.00093235	401.21528405486885	53.736	0.51009	50.489	50.212	50.722	-3.2474					19	9	3	0	0	0	0.027462	1	3293	3293		19.997	3.2794	1	30792			41859	10242	34554	34578	45344	45344					0.030331908276139075
PARLASNALQ	10	Unmodified	_PARLASNALQ_					0	0	0		ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	ENSG00000047188|ENST00000161863|YTHDC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.7970581054688	2	520.795998	1039.57744	0.59198	0.0003083	2.7276	0.0014205	3.3196	0.0017288	520.797385276476	36.315	1.995	33.466	33.139	35.134	-2.849					141	39	6	0	0	0	0.44431	1	1311	1311		62.107	10.772	1	2408500			41860	1139	34555	34579	45345	45345					0.05923663566090909
PARLGTFLEP	10	Unmodified	_PARLGTFLEP_					0	0	0			REV__nc|ENSG00000021574|Q9UBP0-4|SPAST	REV__nc|ENSG00000021574|Q9UBP0-4|SPAST	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.808349609375	2	550.808574	1099.60259	2.0607	0.001135	0.14154	7.7959E-05	2.2022	0.001213	550.8088103369719	95.14	0.33546	95.14	94.949	95.284	0					10	7	2	0	0	0	0.02706	1	10370	10370		30.318	1.1477	1	345910	+		41861	16546	34556	34580	45346	45346					0.05677718368656315
PARLHGEKE	9	Unmodified	_PARLHGEKE_					0	0	0		tr|A0A553SKD2|A0A553SKD2_NIACIS-adenosylmethionine:tRNAribosyltransferase-isomeraseOS=NialliacirculansOX=1397GN=queAPE=3SV=1	tr|A0A553SKD2|A0A553SKD2_NIACIS-adenosylmethionine:tRNAribosyltransferase-isomeraseOS=NialliacirculansOX=1397GN=queAPE=3SV=1	tr|A0A553SKD2|A0A553SKD2_NIACIS-adenosylmethionine:tRNAribosyltransferase-isomeraseOS=NialliacirculansOX=1397GN=queAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	518.7803955078125	2	518.780348	1035.54614	1.0108	0.00052437	-1.3327	-0.00069137	-0.32192	-0.000167	518.7794953787475	41.419	1.2817	38.709	38.438	39.72	-2.7097					65	25	4	0	0	0	0.59259	1	2165	2165		32.812	2.3088	1	331240			41862	33603	34557	34581	45347	45347					0.029790905319941885
PARLLAPLLL	10	Unmodified	_PARLLAPLLL_					0	0	0		ENSG00000187730|ENST00000378585|GABRD	ENSG00000187730|ENST00000378585|GABRD	ENSG00000187730|ENST00000378585|GABRD	MULTI-MSMS	OvCa9_classI_Rep3	3	538.8634643554688	2	538.863152	1075.71175	0.50313	0.00027112	-1.3946	-0.0007515	-0.89148	-0.00048038	538.8625358740957	133.13	11.263	132	131.63	142.9	-1.1249					494	228	5	0	0	0	0.64063	1	10887	10887		37.159	0	1	10229000			41863	8426	34558	34582	45348	45348					0.17692349058779655
PARLLPLL	8	Unmodified	_PARLLPLL_					0	0	0		ENST00000430411.1_1_22:37882241-37882409:-|nuORF	ENST00000430411.1_1_22:37882241-37882409:-|nuORF	ENST00000430411.1_1_22:37882241-37882409:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	446.8031921386719	2	446.802563	891.590573	0.97127	0.00043396	-0.80234	-0.00035849	0.16893	7.5478E-05	446.80206538666704	119.76	1.1814	118.73	118.33	119.51	-1.0271					55	23	3	0	0	0	0.64377	1	9108	9108		54.765	0	1	215100			41864	11789	34559	34583	45349	45349					0.14044146416131298
PARLLPLL	8	Unmodified	_PARLLPLL_					0	0	0		ENST00000430411.1_1_22:37882241-37882409:-|nuORF	ENST00000430411.1_1_22:37882241-37882409:-|nuORF	ENST00000430411.1_1_22:37882241-37882409:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	446.8027038574219	2	446.802563	891.590573	-0.94931	-0.00042415	1.1109	0.00049634	0.16157	7.2189E-05	446.8029099891655	120.04	1.0977	118.69	118.35	119.45	-1.3444					54	20	4	0	0	0	0.63104	1	11282	11282		57.453	0	1	196690			41865	11789	34559	34583	45350	45350					0.14044146416131298
PARLVASL	8	Unmodified	_PARLVASL_					0	0	0			REV__ENST00000204005.13_1_19:41111557-41112187:+|nuORF	REV__ENST00000204005.13_1_19:41111557-41112187:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	413.7602233886719	2	413.760895	825.507237	0.38136	0.00015779	-0.29332	-0.00012136	0.088043	3.6429E-05	413.7606632277241	94.764	1.4305	93.665	93.361	94.792	-1.0995					68	28	4	0	0	0	0.30448	2	8501	8501;8508		106.42	2.6769	1	458180	+		41866	23699	34560	34584	45351;45352	45351					0.08750409968274653
PARLVASL	8	Unmodified	_PARLVASL_					0	0	0			REV__ENST00000204005.13_1_19:41111557-41112187:+|nuORF	REV__ENST00000204005.13_1_19:41111557-41112187:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	413.7618103027344	2	413.760895	825.507237	0.3328	0.0001377	-0.45608	-0.00018871	-0.12328	-5.1009E-05	413.76058110559427	96.211	1.5603	93.786	93.457	95.018	-2.4256					67	30	4	0	0	0	0.48084	1	8482	8482		79.451	2.6769	1	612870	+		41867	23699	34560	34584	45353	45353					0.08750409968274653
PARLVASL	8	Unmodified	_PARLVASL_					0	0	0			REV__ENST00000204005.13_1_19:41111557-41112187:+|nuORF	REV__ENST00000204005.13_1_19:41111557-41112187:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	413.760895	825.507237	0.3328	0.0001377	-0.45608	-0.00018871	-0.12328	-5.1009E-05	413.76058110559427	96.211	1.5603	93.786	93.457	95.018	-2.4256	0.050421	-7.8815E-05	NaN	106.42	67	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	612870	+		41868	23699	34560	34584							0.08750409968274653
PARMRLGE	8	Unmodified	_PARMRLGE_					0	0	0			REV__ENST00000261918.8_1_15:74702725-74702872:-|nuORF	REV__ENST00000261918.8_1_15:74702725-74702872:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.25262451171875	2	465.252911	928.49127	-0.15367	-7.1495E-05	-3.6294	-0.0016886	-3.7831	-0.0017601	465.25113265856197	57.714	1.1138	54.369	53.985	55.098	-3.3449					56	21	4	0	0	0	0.71369	1	3769	3769		40.573	2.7611	1	803250	+		41869	23963	34561	34585	45354	45354					0.02416380459726497
PARPLGLSI	9	Unmodified	_PARPLGLSI_					0	0	0		ENSG00000105825|ENST00000222543|TFPI2;nc|ENSG00000105825|P48307-2|TFPI2;ENST00000461482.1_1_7:93519395-93519990:-|nuORF	ENSG00000105825|ENST00000222543|TFPI2	ENSG00000105825|ENST00000222543|TFPI2	MULTI-MSMS	OvCa9_classI_Rep3	3	462.287841796875	2	462.287277	922.560001	-0.38212	-0.00017665	-0.037227	-1.7209E-05	-0.41934	-0.00019386	462.2871601553284	98.31	1.4913	96.55	96.11	97.601	-1.7595					81	28	4	0	0	0	0.16524	1	6578	6578		82.305	0	1	860650			41870	2505	34562	34586	45355	45355					0.09562368031083679
PARRASAIL	9	Unmodified	_PARRASAIL_					0	0	0		ENSG00000135842|ENST00000367511|NIBAN1	ENSG00000135842|ENST00000367511|NIBAN1	ENSG00000135842|ENST00000367511|NIBAN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.7785949707031	2	477.795801	953.577048	-0.82509	-0.00039423	-3.7185	-0.0017767	-4.5436	-0.0021709	477.7942229238081	43.875	0.80407	40.867	40.589	41.393	-3.0074					28	15	3	0	0	0	0.027411	1	2186	2186		54.776	0	1	105090			41871	4423	34563	34587	45356	45356					0.09840288636894456
PARVLPPVL	9	Unmodified	_PARVLPPVL_					0	0	0			REV__nc|ENSG00000117523|Q9Y520-2|PRRC2C	REV__nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	OvCa9_classI_Rep2	2	481.3128662109375	2	481.313295	960.612037	0.1367	6.5794E-05	-0.25624	-0.00012333	-0.11954	-5.7538E-05	481.31300277026764	111.59	1.6261	111.45	110.98	112.61	-0.13961					80	32	4	0	0	0	0.52083	2	10558	10547;10558		40.573	3.5441	1	293810	+		41872	18355	34564	34588	45357;45358	45358					0.130155314448416
PARVVAVL	8	Unmodified	_PARVVAVL_					0	0	0		ENSG00000162975|ENST00000295082|KCNF1	ENSG00000162975|ENST00000295082|KCNF1	ENSG00000162975|ENST00000295082|KCNF1	MULTI-MSMS	OvCa9_classI_Rep2	2	412.7708740234375	2	412.771263	823.527973	1.187	0.00048995	-0.67717	-0.00027952	0.5098	0.00021043	412.77082954843223	92.604	1.5518	91.436	91.024	92.575	-1.168					68	29	4	0	0	0	0.56113	1	8244	8244		71.378	16.613	1	349930			41873	6252	34565	34589	45359	45359					0.1091500034793853
PARVVAVL	8	Unmodified	_PARVVAVL_					0	0	0		ENSG00000162975|ENST00000295082|KCNF1	ENSG00000162975|ENST00000295082|KCNF1	ENSG00000162975|ENST00000295082|KCNF1	MULTI-MSMS	OvCa9_classI_Rep3	3	412.77191162109375	2	412.771263	823.527973	-0.40706	-0.00016802	0.58545	0.00024166	0.17839	7.3634E-05	412.77137174330215	93.348	1.4663	91.386	91.079	92.545	-1.9617					64	28	3	0	0	0	0.66704	2	5978	5978;5984		50.025	7.5501	1	465000			41874	6252	34565	34589	45360;45361	45360					0.1091500034793853
PARVVAVL	8	Unmodified	_PARVVAVL_					0	0	0		ENSG00000162975|ENST00000295082|KCNF1	ENSG00000162975|ENST00000295082|KCNF1	ENSG00000162975|ENST00000295082|KCNF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	412.77191162109375	2	412.771263	823.527973	0.061376	2.5334E-05	0.66446	0.00027427	0.72584	0.00029961	412.7713807300369	93.938	1.2597	91.431	91.212	92.472	-2.5072					53	25	3	0	0	0	0.66704	2	8217	8207;8217		50.025	3.2581	1	408510			41875	6252	34565	34589	45362;45363	45363					0.1091500034793853
PASAPVPVLV	10	Unmodified	_PASAPVPVLV_					0	0	0			REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1	REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	476.2864685058594	2	475.289485	948.564418	2.849	0.0013541	-0.2867	-0.00013626	2.5623	0.0012178	475.28892126872273	96.397	0.45798	96.397	96.21	96.668	0					15	10	2	0	0	0	0.026871	1	10562	10562		29.15	0	1	567960	+		41876	17129	34566	34590	45364	45364					0.08807832453987885
PASAPVPVLV	10	Unmodified	_PASAPVPVLV_					0	0	0			REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1	REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	475.289485	948.564418	-0.14905	-7.084E-05	0.34822	0.00016551	0.19918	9.4666E-05	475.28913334147575	97.545	0.74097	96.587	96.118	96.859	-0.95857	0.060341	0.00021181	NaN	29.15	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23371	+		41877	17129	34566	34590							0.08807832453987885
PASAPVPVLV	10	Unmodified	_PASAPVPVLV_					0	0	0			REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1	REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	475.289485	948.564418	0.57601	0.00027377	0.91467	0.00043473	1.4907	0.0007085	475.28968272220754	98.355	1.0278	96.595	96.011	97.038	-1.7595	0.068765	0.00075026	NaN	29.15	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19902	+		41878	17129	34566	34590							0.08807832453987885
PASLAKRLS	9	Unmodified	_PASLAKRLS_					0	0	0			REV__nc|ENSG00000106078|O75128-3|COBL	REV__nc|ENSG00000106078|O75128-3|COBL	MULTI-SECPEP	OvCa9_classI_Rep2	2	471.26165771484375	2	471.790184	941.565815	0.9028	0.00042593	-0.69189	-0.00032643	0.21091	9.9506E-05	471.7896525192708	42.059	1.2327	39.349	38.684	39.917	-2.7097					45	24	3	0	0	0	0.027462	1	2250	2250		32.812	15.447	1	56678	+		41879	28782	34567	34591	45365	45365					0.0926946654275298
PASLEPKPL	9	Unmodified	_PASLEPKPL_					0	0	0		ENSG00000189350|ENST00000379558|TOGARAM2	ENSG00000189350|ENST00000379558|TOGARAM2	ENSG00000189350|ENST00000379558|TOGARAM2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.8004150390625	2	476.279118	950.543683	-0.53561	-0.0002551	-1.5696	-0.00074758	-2.1052	-0.0010027	476.27841980174225	55.4	0.81361	52.106	51.854	52.668	-3.2944					35	15	3	0	0	0	0.027462	1	3554	3554		29.15	1.2673	1	112640			41880	8552	34568	34592	45366	45366					0.06643242074312639
PASLEPKPL	9	Unmodified	_PASLEPKPL_					0	0	0		ENSG00000189350|ENST00000379558|TOGARAM2	ENSG00000189350|ENST00000379558|TOGARAM2	ENSG00000189350|ENST00000379558|TOGARAM2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	476.279118	950.543683	-1.2166	-0.00057946	-1.2899	-0.00061434	-2.5065	-0.0011938	476.27839276419155	54.961	0.40043	52.147	51.922	52.322	-2.8139	0.020737	7.3027E-05	NaN	29.15	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33315			41881	8552	34568	34592							0.06643242074312639
PASLPQKNIL	10	Unmodified	_PASLPQKNIL_					0	0	0			REV__tr|A0A553SIU1|A0A553SIU1_NIACIUndecaprenyl/decaprenyl-phosphatealpha-N-acetylglucosaminyl1-phosphatetransferaseOS=NialliacirculansOX=1397GN=CEQ21_15515PE=4SV=1	REV__tr|A0A553SIU1|A0A553SIU1_NIACIUndecaprenyl/decaprenyl-phosphatealpha-N-acetylglucosaminyl1-phosphatetransferaseOS=NialliacirculansOX=1397GN=CEQ21_15515PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.7816162109375	2	540.824224	1079.63389	-1.4128	-0.00076408	1.0397	0.00056231	-0.37308	-0.00020177	540.8245480219211	53.153	1.9216	49.945	48.994	50.915	-3.208					59	37	2	0	0	0	0.026968	1	3286	3286		29.17	6.1276	1	25212	+		41882	29928	34569	34593	45367	45367					0.09726291402739662
PASLPQKNIL	10	Unmodified	_PASLPQKNIL_					0	0	0			REV__tr|A0A553SIU1|A0A553SIU1_NIACIUndecaprenyl/decaprenyl-phosphatealpha-N-acetylglucosaminyl1-phosphatetransferaseOS=NialliacirculansOX=1397GN=CEQ21_15515PE=4SV=1	REV__tr|A0A553SIU1|A0A553SIU1_NIACIUndecaprenyl/decaprenyl-phosphatealpha-N-acetylglucosaminyl1-phosphatetransferaseOS=NialliacirculansOX=1397GN=CEQ21_15515PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	540.824224	1079.63389	-1.8194	-0.00098396	1.8509	0.001001	0.031535	1.7055E-05	540.8250820317469	52.536	0.78881	49.723	49.345	50.134	-2.8129	-0.11082	0.00078932	NaN	29.17	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7318.9	+		41883	29928	34569	34593							0.09726291402739662
PASSLKHLQG	10	Unmodified	_PASSLKHLQG_					0	0	0		ENST00000432233.7_1_19:54824305-54824347:-|nuORF	ENST00000432233.7_1_19:54824305-54824347:-|nuORF	ENST00000432233.7_1_19:54824305-54824347:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.274658203125	2	519.290548	1036.56654	-0.89068	-0.00046252	-0.98019	-0.000509	-1.8709	-0.00097153	519.2896116492996	41.468	0.35376	41.468	41.24	41.594	0					11	7	2	0	0	0	0.027145	1	2600	2600		31.53	15.888	1	110680			41884	11807	34570	34594	45368	45368					0.04972261191801408
PATAAVRACP	10	Unmodified	_PATAAVRACP_					0	0	0			REV__ENST00000083182.7_1_17:58603276-58603570:-|nuORF	REV__ENST00000083182.7_1_17:58603276-58603570:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.7791748046875	2	478.752744	955.490935	-0.90828	-0.00043484	1.0133	0.00048511	0.105	5.0268E-05	478.7533093952204	43.526	0.67437	40.518	40.168	40.842	-3.0074					19	12	2	0	0	0	0.026871	1	2113	2113		21.96	0	1	28995	+		41885	23678	34571	34595	45369	45369					0.011409607398604749
PATAPHCLL	9	Unmodified	_PATAPHCLL_					0	0	0		nc|ENSG00000063176|Q9NRA0-5|SPHK2	nc|ENSG00000063176|Q9NRA0-5|SPHK2	nc|ENSG00000063176|Q9NRA0-5|SPHK2	MULTI-MSMS	OvCa9_classI_Rep2	2	461.74505615234375	2	461.744388	921.474223	-0.88757	-0.00040983	1.9391	0.00089538	1.0516	0.00048555	461.7451389147258	116.15	1.4848	116.04	115.64	117.12	-0.11777					63	29	3	0	0	0	0.53957	1	11101	11101		38.806	1.7777	1	230030			41886	14882	34572	34596	45370	45370					0.010344598539063554
PATGRRPRVP	10	Unmodified	_PATGRRPRVP_					0	0	0			REV__ENSG00000205089|ENST00000378731|CCNI2	REV__ENSG00000205089|ENST00000378731|CCNI2	MULTI-MSMS	OvCa9_classI_Rep2	2	553.829345703125	2	553.830706	1105.64686	-0.8401	-0.00046527	-0.49633	-0.00027488	-1.3364	-0.00074015	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.50656	1	14408	14408		53.351	14.545	1	245610	+		41887	23201	34573	34597	45371	45371					0.09826167305504896
PATHRKIF	8	Unmodified	_PATHRKIF_					0	0	0			REV__ENSG00000180008|ENST00000555846|SOCS4	REV__ENSG00000180008|ENST00000555846|SOCS4	MULTI-MSMS	OvCa9_classI_Rep2	2	485.2826232910156	2	485.285069	968.555585	-1.9489	-0.00094577	-2.4543	-0.0011911	-4.4033	-0.0021368	485.2837680529316	35.087	1.3898	32.377	32.109	33.499	-2.7097					66	27	4	0	0	0	0.73288	1	1408	1408		35.201	3.2459	1	549360	+		41888	22151	34574	34598	45372	45372					0.07004903608174118
PATLLRLL	8	Unmodified	_PATLLRLL_					0	0	0			REV__ENST00000541064.5_1_14:74946892-74946946:-|nuORF	REV__ENST00000541064.5_1_14:74946892-74946946:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	448.7998046875	2	448.80002	895.585488	1.1656	0.00052313	-1.2994	-0.00058316	-0.13374	-6.0023E-05	448.7993403222566	118.17	1.7331	118.03	117.69	119.42	-0.14755					87	34	4	0	0	0	0.57878	1	11331	11331		68.485	0	1	562320	+		41889	27362	34575	34599	45373	45373					0.1335184255351578
PATLLRLL	8	Unmodified	_PATLLRLL_					0	0	0			REV__ENST00000541064.5_1_14:74946892-74946946:-|nuORF	REV__ENST00000541064.5_1_14:74946892-74946946:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	448.7994384765625	2	448.80002	895.585488	0.73618	0.0003304	-0.70585	-0.00031678	0.030333	1.3614E-05	448.7995819385941	119.43	1.6759	118.4	117.98	119.66	-1.0271					86	33	4	0	0	0	0.67745	1	9038	9038		47.916	9.1095	1	762460	+		41890	27362	34575	34599	45374	45374					0.1335184255351578
PATLLRLL	8	Unmodified	_PATLLRLL_					0	0	0			REV__ENST00000541064.5_1_14:74946892-74946946:-|nuORF	REV__ENST00000541064.5_1_14:74946892-74946946:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	448.800048828125	2	448.80002	895.585488	-0.92415	-0.00041476	0.78799	0.00035365	-0.13616	-6.1108E-05	448.8002911925649	119.74	1.6635	118.39	117.98	119.65	-1.3444					91	31	4	0	0	0	0.62934	1	11234	11234		57.811	0	1	858030	+		41891	27362	34575	34599	45375	45375					0.1335184255351578
PATLRPKP	8	Unmodified	_PATLRPKP_					0	0	0			REV__ENSG00000154783|ENST00000285046|FGD5	REV__ENSG00000154783|ENST00000285046|FGD5	MULTI-SECPEP	OvCa99_classI_Rep5	1	441.2286071777344	2	440.27417	878.533787	0.73637	0.00032421	-0.63031	-0.00027751	0.10606	4.6695E-05	440.2737038715859	52.188	0.60974	52.188	51.912	52.522	0					25	13	3	0	0	0	0.028476	1	4049	4049		23.042	1.0826	1	342070	+		41892	20398	34576	34600	45376	45376					0.08966098859605154
PAVAAPLRLL	10	Unmodified	_PAVAAPLRLL_					0	0	0			REV__ENST00000447937.1_1_Y:21230620-21239046:-|nuORF	REV__ENST00000447937.1_1_Y:21230620-21239046:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	510.8315734863281	2	510.831852	1019.64915	1.2324	0.00062957	-1.715	-0.00087606	-0.48253	-0.00024649	510.8308797433976	121.36	1.4143	120.34	120.01	121.43	-1.0271					50	26	2	0	0	0	0.68695	1	9288	9288		31.955	1.4512	1	296510	+		41893	25924	34577	34601	45377	45377					0.14011202990582206
PAVDLNQVL	9	Unmodified	_PAVDLNQVL_					0	0	0		ENSG00000131738|ENST00000251646|KRT33B;CON__Q14525	ENSG00000131738|ENST00000251646|KRT33B	ENSG00000131738|ENST00000251646|KRT33B	MULTI-MSMS	OvCa99_classI_Rep5	1	484.77593994140625	2	484.7742	967.533846	0.70962	0.00034401	1.1057	0.00053603	1.8154	0.00088004	484.7746131407354	152.11	0.81026	152.11	151.74	152.55	0					44	17	4	0	0	0	0.24951	1	17815	17815		68.787	6.6794	1	585070		+	41894	635	34578	34602	45378	45378					0.04878054068944948
PAVKHPGF	8	Unmodified	_PAVKHPGF_					0	0	0			REV__ENSG00000155875|ENST00000380534|SAXO1	REV__ENSG00000155875|ENST00000380534|SAXO1	MULTI-SECPEP	OvCa99_classI_Rep5	1	426.5507507324219	2	426.739963	851.465373	2.5196	0.0010752	0.04698	2.0048E-05	2.5666	0.0010953	426.7399371783883	86.098	0.23761	86.098	85.994	86.231	0					8	5	2	0	0	0	0.028476	1	9062	9062		21.702	12.232	1	106930	+		41895	20445	34579	34603	45379	45379					0.03369854279753781
PAVSEGHIS	9	Unmodified	_PAVSEGHIS_					0	0	0		ENST00000389467.3_16:18847329-18847404:-|nuORF	ENST00000389467.3_16:18847329-18847404:-|nuORF	ENST00000389467.3_16:18847329-18847404:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	449.26239013671875	2	448.727249	895.439946	0.31293	0.00014042	0.041776	1.8746E-05	0.35471	0.00015917	448.72705190832113	58.856	0.65434	55.464	55.15	55.805	-3.392					26	12	3	0	0	0	0.027456	1	3869	3869		47.916	0	1	109820			41896	11196	34580	34604	45380	45380					-0.011956650333331709
PAVSKASSR	9	Unmodified	_PAVSKASSR_					0	0	0		ENSG00000068323|ENST00000315869|TFE3	ENSG00000068323|ENST00000315869|TFE3	ENSG00000068323|ENST00000315869|TFE3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.28387451171875	2	451.756341	901.498129	0.75671	0.00034185	-0.7905	-0.00035711	-0.033787	-1.5264E-05	451.7560218289068	47.344	0.86042	44.272	43.962	44.823	-3.0724					37	16	3	0	0	0	0.027418	1	2557	2557		40.778	0	1	40554			41897	1389	34581	34605	45381	45381					0.043440166119466994
PAVTTWNTY	9	Unmodified	_PAVTTWNTY_					0	0	0		NAP1L4-CFTR|1|fusion;nc|ENSG00000001626|P13569-2|CFTR;ENSG00000001626|ENST00000003084|CFTR	NAP1L4-CFTR|1|fusion	NAP1L4-CFTR|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.7792358398438	2	526.756007	1051.49746	-1.3268	-0.00069889	-1.212	-0.00063842	-2.5388	-0.0013373	526.7556504411261	53.076	0.2961	49.868	49.698	49.995	-3.208					7	5	2	0	0	0	0.027462	1	3217	3217		30.504	0	1	13820			41898	14854	34582	34606	45382	45382					-0.026228228277659582
PAWAARIL	8	Unmodified	_PAWAARIL_					0	0	0		nc|ENSG00000155066|Q8N271-3|PROM2;ENST00000487138.5_1_2:95944617-95954741:+|nuORF;nc|ENSG00000155066|Q8N271-2|PROM2;ENSG00000155066|ENST00000317620|PROM2;chr2:95287213-95288211|128|14.66|0.69|4.41|+|0|PROM2,PROM2|1	nc|ENSG00000155066|Q8N271-3|PROM2	nc|ENSG00000155066|Q8N271-3|PROM2	MULTI-MSMS	OvCa9_classI_Rep3	3	449.26898193359375	2	449.268887	896.523222	0.9461	0.00042505	-1.0666	-0.00047918	-0.12048	-5.4127E-05	449.26835717612227	113.5	2.9115	112.42	112.15	115.06	-1.0753					133	57	4	0	0	0	0.72134	1	8375	8375		39.021	1.993	1	1514000			41899	5766	34583	34607	45383	45383					0.07082116205185685
PAWKQVNLKKA	11	Unmodified	_PAWKQVNLKKA_					0	0	0		nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL;nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-4|SVIL	nc|ENSG00000197321|O95425-4|SVIL	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8807983398438	2	641.885147	1281.75574	-3.6311	-0.0023307	-0.33677	-0.00021616	-3.9678	-0.0025469	641.8847801872174	153.39	4.0845	151.94	150.68	154.77	-1.4516					420	106	6	0	0	0	0.71498	1	15050	15050		24.519	0	1	809780			41900	8700	34584	34608	45384	45384					0.1261333348509197
PAYKSIKRG	9	Unmodified	_PAYKSIKRG_					0	0	0			REV__ENST00000431339.1_1_X:73326627-73327404:+|nuORF	REV__ENST00000431339.1_1_X:73326627-73327404:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.2696533203125	2	510.303458	1018.59236	0.056337	2.8749E-05	-0.60459	-0.00030853	-0.54825	-0.00027978	510.303018173691	89.387	2.1527	86.784	86.237	88.389	-2.6027					98	42	3	0	0	0	0.027462	1	7627	7627		39.253	18.306	1	592300	+		41901	20085	34585	34609	45385	45385					0.08381155434096854
PCADNPAPRIL	11	Unmodified	_PCADNPAPRIL_					0	0	0			REV__ENST00000276431.8_1_8:22926459-22926618:-|nuORF	REV__ENST00000276431.8_1_8:22926459-22926618:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8031616210938	2	583.802965	1165.59138	0.97841	0.0005712	-0.94752	-0.00055316	0.03089	1.8034E-05	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.68757	1	1403	1403		33.922	1.1092	1	155970	+		41902	24097	34586	34610	45386	45386					0.015205730028583275
PCALGHRA	8	Unmodified	_PCALGHRA_					0	0	0		ENST00000480342.5_1_1:8525723-8716473:-|nuORF	ENST00000480342.5_1_1:8525723-8716473:-|nuORF	ENST00000480342.5_1_1:8525723-8716473:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	412.7138977050781	2	412.713422	823.412291	2.1865	0.00090239	-0.94271	-0.00038907	1.2438	0.00051333	412.7129103733273	119.45	0.98956	119.45	119.19	120.18	0					46	23	3	0	0	0	0.68312	1	13694	13694		46.766	18.512	1	843960			41903	12524	34587	34611	45387	45387					-0.006478467745637317
PCASVDRL	8	Unmodified	_PCASVDRL_					0	0	0		ENST00000343742.6_1_12:40618947-40626158:+|nuORF	ENST00000343742.6_1_12:40618947-40626158:+|nuORF	ENST00000343742.6_1_12:40618947-40626158:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	430.92352294921875	2	430.71837	859.422187	0.76245	0.0003284	-1.7322	-0.00074607	-0.9697	-0.00041767	430.71785273590956	58.017	0.4046	54.672	54.444	54.849	-3.3449					9	7	2	0	0	0	0.028476	1	3790	3790		40.573	20.091	1	13589			41904	10603	34588	34612	45388	45388					-0.013147035598308321
PCCFCLWTV	9	Unmodified	_PCCFCLWTV_					0	0	0		ENST00000397030.5_1_13:113751205-113751547:+|nuORF	ENST00000397030.5_1_13:113751205-113751547:+|nuORF	ENST00000397030.5_1_13:113751205-113751547:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2479858398438	2	536.226659	1070.43877	1.5069	0.00080802	1.2072	0.00064733	2.7141	0.0014553	536.2271134357826	113.86	0.17814	113.86	113.79	113.97	0					5	3	2	0	0	0	0.027462	1	12992	12992		33.516	0	1	66337			41905	11335	34589	34613	45389	45389					-0.09363661989777938
PCFNKLFPL	9	Unmodified	_PCFNKLFPL_					0	0	0		ENST00000530561.5_1_11:58294929-58321330:-|nuORF;ENSG00000110031|ENST00000395074|LPXN;nc|ENSG00000110031|O60711-2|LPXN	ENST00000530561.5_1_11:58294929-58321330:-|nuORF	ENST00000530561.5_1_11:58294929-58321330:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.2724609375	2	539.791338	1077.56812	-0.54688	-0.0002952	-4.4607	-0.0024079	-5.0076	-0.0027031	539.7894838480174	90.625	0.91235	88.05	87.248	88.161	-2.575					32	17	3	0	0	0	0.027462	1	7776	7776		26.796	0	1	27843			41906	2747	34590	34614	45390	45390					0.032441789561971746
PCFWGLGLL	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))PCFWGLGLL_					1	0	0			REV__ENST00000570507.5_1_17:79780712-79780796:-|nuORF	REV__ENST00000570507.5_1_17:79780712-79780796:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.2716674804688	2	524.270238	1046.52592	-1.2154	-0.00063721	3.266	0.0017123	2.0506	0.0010751	524.271834383769	120.77	3.305	119.42	118.72	122.02	-1.3479					160	64	5	0	0	0	0.42921	1	11421	11421		49.211	10.405	1	1764900	+		41907	27740	34591	34615	45391	45391					0.004522035478430553
PCGEKRDW	8	Unmodified	_PCGEKRDW_					0	0	0		ENST00000307271.3_1_7:150171706-150174432:+|nuORF	ENST00000307271.3_1_7:150171706-150174432:+|nuORF	ENST00000307271.3_1_7:150171706-150174432:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.24481201171875	2	495.726726	989.4389	-0.91106	-0.00045164	3.6542	0.0018115	2.7431	0.0013598	495.72849621119946	37.415	0.5551	37.415	37.159	37.714	0					16	11	2	0	0	0	0.028476	1	2024	2024		47.916	7.1374	1	197950			41908	10254	34592	34616	45392	45392					-0.05624202673891432
PCGHLILYL	9	Unmodified	_PCGHLILYL_					0	0	0			REV__ENST00000413171.6_1_7:872201-878607:+|nuORF	REV__ENST00000413171.6_1_7:872201-878607:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.3042602539062	2	514.783513	1027.55247	0.53307	0.00027442	1.427	0.00073462	1.9601	0.001009	514.7846524295234	159.5	0.32854	159.5	159.33	159.66	0					10	6	2	0	0	0	0.027462	1	18697	18697		39.021	19.918	1	20515	+		41909	25505	34593	34617	45393	45393					0.03979892439156174
PCGPIYIDVPV	11	Unmodified	_PCGPIYIDVPV_					0	0	0			REV__ENSG00000115286|ENST00000233627|NDUFS7	REV__ENSG00000115286|ENST00000233627|NDUFS7	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.8013916015625	2	586.804642	1171.59473	-6.8597	-0.0040253	4.2108	0.0024709	-2.649	-0.0015544	586.8069299890403	160.36	3.1265	158.75	158.28	161.4	-1.61					144	76	3	0	0	0	0.72244	1	15975	15975		21.96	0	1	162470	+		41910	16268	34594	34618	45394	45394					0.015798230568634608
PCGTGLLATL	10	Unmodified	_PCGTGLLATL_					0	0	0		ENST00000570253.5_1_16:2147872-2150021:-|nuORF	ENST00000570253.5_1_16:2147872-2150021:-|nuORF	ENST00000570253.5_1_16:2147872-2150021:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	472.29962158203125	2	473.257328	944.500103	-0.070065	-3.3159E-05	-3.1084	-0.0014711	-3.1785	-0.0015043	473.25560122680497	93.262	0.87144	92.094	91.756	92.628	-1.168					26	16	2	0	0	0	0.02661	1	8305	8305		40.778	3.6191	1	20278			41911	13892	34595	34619	45395	45395					0.02563309305560324
PCGTGLLATL	10	Unmodified	_PCGTGLLATL_					0	0	0		ENST00000570253.5_1_16:2147872-2150021:-|nuORF	ENST00000570253.5_1_16:2147872-2150021:-|nuORF	ENST00000570253.5_1_16:2147872-2150021:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	473.257328	944.500103	-0.2141	-0.00010132	-3.1565	-0.0014938	-3.3706	-0.0015952	473.2556353535342	93.986	0.86496	92.024	91.78	92.645	-1.9617	-0.093249	0.00033102	NaN	40.778	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37222			41912	13892	34595	34619							0.02563309305560324
PCGTGLLATL	10	Unmodified	_PCGTGLLATL_					0	0	0		ENST00000570253.5_1_16:2147872-2150021:-|nuORF	ENST00000570253.5_1_16:2147872-2150021:-|nuORF	ENST00000570253.5_1_16:2147872-2150021:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	473.257328	944.500103	0.39672	0.00018775	-4.1793	-0.0019779	-3.7826	-0.0017902	473.2551801022976	94.704	0.60151	92.235	91.96	92.561	-2.4685	0.1174	-0.00063712	NaN	40.778	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29498			41913	13892	34595	34619							0.02563309305560324
PCILMNNI	8	Unmodified	_PCILMNNI_					0	0	0		ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	ENSG00000137766|ENST00000260323|UNC13C	MULTI-SECPEP	OvCa99_classI_Rep5	1	459.23992919921875	2	459.232799	916.451044	-0.95831	-0.00044009	2.5948	0.0011916	1.6365	0.00075151	459.2333193761905	65.897	0.19676	65.897	65.748	65.945	0					6	4	2	0	0	0	0.028476	1	6054	6054		69.093	0	1	254680			41914	4614	34596	34620	45396	45396					-0.010523022550614769
PCLFRPEGDAG	11	Unmodified	_PCLFRPEGDAG_					0	0	0			REV__ENST00000591352.1_1_19:11618808-11624656:-|nuORF	REV__ENST00000591352.1_1_19:11618808-11624656:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	581.2743530273438	2	581.271498	1160.52844	0.36113	0.00020992	1.5993	0.00092961	1.9604	0.0011395	581.2722591765433	123.9	1.1909	122.86	122.56	123.75	-1.0377					50	22	3	0	0	0	0.70518	1	9582	9582		27.882	1.1893	1	162550	+		41915	27930	34597	34621	45397	45397					-0.04539992785157665
PCLGLPKYL	9	Unmodified	_PCLGLPKYL_					0	0	0		ENST00000567471.1_1_16:2030682-2034179:-|nuORF	ENST00000567471.1_1_16:2030682-2034179:-|nuORF	ENST00000567471.1_1_16:2030682-2034179:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.2850036621094	2	502.285889	1002.55722	2.6378	0.0013249	2.2517	0.001131	4.8895	0.0024559	502.2869296875926	116.11	0.45854	116.11	115.86	116.32	0					14	9	2	0	0	0	0.027462	1	13245	13245		33.516	3.674	1	104550			41916	13862	34598	34622	45398	45398					0.05604776581913029
PCLILFSLL	9	Unmodified	_PCLILFSLL_					0	0	0			REV__tr|A0A7D7A4R3|A0A7D7A4R3_9CLOTAccessorygeneregulatorBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04200PE=4SV=1	REV__tr|A0A7D7A4R3|A0A7D7A4R3_9CLOTAccessorygeneregulatorBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04200PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8032531738281	2	509.803914	1017.59328	-0.41042	-0.00020923	0.12912	6.5828E-05	-0.2813	-0.00014341	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.6959	1	13423	13423		19.36	1.0356	1	150140	+		41917	32615	34599	34623	45399	45399					0.08518233758786664
PCLIVFLL	8	Unmodified	_PCLIVFLL_					0	0	0			REV__nc|ENSG00000105552|O15382-2|BCAT2	REV__nc|ENSG00000105552|O15382-2|BCAT2	MULTI-SECPEP	OvCa99_classI_Rep5	1	459.2688903808594	2	459.280075	916.545597	2.6327	0.0012091	3.1431	0.0014436	5.7757	0.0026527	459.2811643280789	75.503	0.3926	75.503	75.33	75.723	0					12	9	2	0	0	0	0.028476	1	7518	7518		43.626	10.133	1	276840	+		41918	17736	34600	34624	45400	45400					0.08398579558581787
PCLLKRLR	8	Unmodified	_PCLLKRLR_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.H2029Qfs*32|1|0.9|ENSG00000196924|chrX:154353130-154353140|TGCTGGCCACG/-|frameshift_variant;ENST00000490936.5_1_X:153579531-153588003:-|nuORF;ENST00000466325.1_1_X:153581267-153581814:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OvCa99_classI_Rep5	1	499.8202819824219	2	499.818221	997.62189	-0.1893	-9.4615E-05	3.8468	0.0019227	3.6575	0.0018281	499.8200562601491	22.406	0.51857	22.406	22.228	22.746	0					25	11	3	0	0	0	0.74229	1	200	200		30.504	1.3541	1	749840			41919	8659	34601	34625	45401	45401					0.12298396178562143
PCLLRRAL	8	Unmodified	_PCLLRRAL_					0	0	0			REV__ENSG00000183463|ENST00000332715|URAD	REV__ENSG00000183463|ENST00000332715|URAD	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.2198486328125	2	471.289297	940.564041	-0.61893	-0.00029169	1.4394	0.00067836	0.82044	0.00038666	471.2901695434592	34.997	0.23779	34.997	34.911	35.149	0					7	4	2	0	0	0	0.028476	1	1741	1741		26.796	14.589	1	26816	+		41920	22363	34602	34626	45402	45402					0.0913813425314629
PCLPFIIK	8	Unmodified	_PCLPFIIK_					0	0	0			REV__ENST00000591247.5_1_17:42113248-42113383:-|nuORF	REV__ENST00000591247.5_1_17:42113248-42113383:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	465.2857666015625	2	465.777699	929.540846	1.1304	0.00052649	-0.24917	-0.00011606	0.88118	0.00041043	465.7772609255231	127.1	0.88573	126.03	125.55	126.43	-1.0715					24	16	2	0	0	0	0.028476	1	9931	9931		65.897	0	1	10740	+		41921	27927	34603	34627	45403	45403					0.07325695415818245
PCLRGTITVH	10	Unmodified	_PCLRGTITVH_					0	0	0			REV__ENST00000565280.5_1_15:31198658-31229456:+|nuORF	REV__ENST00000565280.5_1_15:31198658-31229456:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.8258666992188	2	548.800226	1095.5859	-0.21029	-0.00011541	-3.8212	-0.0020971	-4.0315	-0.0022125	548.798339130989	57.589	0.76313	54.245	54.035	54.799	-3.3449					18	14	2	0	0	0	0.026688	1	3778	3778		32.812	4.7309	1	21155	+		41922	23043	34604	34628	45404	45404					0.04192894211064413
PCNSHGPF	8	Unmodified	_PCNSHGPF_					0	0	0			REV__nc|ENSG00000174453|B2RUY7-2|VWC2L	REV__nc|ENSG00000174453|B2RUY7-2|VWC2L	MULTI-MSMS	OvCa9_classI_Rep4_	4	429.68133544921875	2	429.681788	857.349022	0.29004	0.00012463	-2.2671	-0.00097414	-1.9771	-0.00084952	429.6813540755349	117.15	1.0999	115.79	115.51	116.61	-1.3645					51	20	4	0	0	0	0.74971	2	10948	10948;10974		26.796	6.0902	1	115940	+		41923	21833	34605	34629	45405;45406	45405					-0.08535832282450428
PCPAPLPCPAL	11	Unmodified	_PCPAPLPCPAL_					0	0	0		ENST00000428043.5_3_17:61574373-61574724:+|nuORF	ENST00000428043.5_3_17:61574373-61574724:+|nuORF	ENST00000428043.5_3_17:61574373-61574724:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	539.7782592773438	2	539.774831	1077.53511	2.93	0.0015815	-0.6768	-0.00036532	2.2532	0.0012162	539.7742240839073	57.976	1.0782	54.849	54.499	55.577	-3.1264					43	27	3	0	0	0	0.71591	1	1792	1792		24.203	2.5004	1	28519			41924	11768	34606	34630	45407	45407					-0.0005577115814503486
PCPFLKLK	8	Unmodified	_PCPFLKLK_					0	0	0			REV__ENST00000406246.7_1_11:65421573-65421639:-|nuORF	REV__ENST00000406246.7_1_11:65421573-65421639:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	473.2838134765625	2	473.283149	944.551745	2.1277	0.001007	0.25241	0.00011946	2.3801	0.0011265	473.2832091121683	125.96	0.93475	124.91	124.63	125.57	-1.0519					30	17	2	0	0	0	0.66704	1	9823	9823		50.025	4.0523	1	90622	+		41925	25443	34607	34631	45408	45408					0.07725097790091695
PCPKNRKKLK	10	Unmodified	_PCPKNRKKLK_					0	0	0			REV__nc|ENSG00000135679|Q00987-6|MDM2	REV__nc|ENSG00000135679|Q00987-6|MDM2	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3687744140625	2	606.373892	1210.73323	-3.14	-0.001904	-3.9422	-0.0023905	-7.0822	-0.0042945	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.7759	1	15083	15083		21.96	5.4867	1	257720	+		41926	19311	34608	34632	45409	45409					0.13629410815838128
PCPNGGLTQ	9	Unmodified	_PCPNGGLTQ_					0	0	0			REV__nc|ENSG00000273540|Q96MI9|AGBL1	REV__nc|ENSG00000273540|Q96MI9|AGBL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.9089660644531	2	443.708002	885.401452	0.70749	0.00031392	-2.8431	-0.0012615	-2.1357	-0.00094761	443.70722047731505	41.127	0.18077	41.127	41.014	41.195	0					5	3	2	0	0	0	0.027462	1	2532	2532		16.473	0	1	16157	+		41927	23617	34609	34633	45410	45410					-0.045832939395154426
PCPRCLLHVL	10	Unmodified	_PCPRCLLHVL_					0	0	0		ENST00000537834.5_1_19:40771213-40785028:-|nuORF;ENST00000452077.5_2_19:40771216-40790860:-|nuORF	ENST00000537834.5_1_19:40771213-40785028:-|nuORF	ENST00000537834.5_1_19:40771213-40785028:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.2980346679688	2	575.814822	1149.61509	-1.5799	-0.00090976	-2.3338	-0.0013438	-3.9138	-0.0022536	575.8146175293413	72.128	0.29312	68.672	68.509	68.802	-3.4563					8	5	2	0	0	0	0.026939	1	5512	5512		17.365	2.5001	1	14441			41928	12051	34610	34634	45411	45411					0.04626715235690426
PCPRCLLHVL	10	Unmodified	_PCPRCLLHVL_					0	0	0		ENST00000537834.5_1_19:40771213-40785028:-|nuORF;ENST00000452077.5_2_19:40771216-40790860:-|nuORF	ENST00000537834.5_1_19:40771213-40785028:-|nuORF	ENST00000537834.5_1_19:40771213-40785028:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	575.814822	1149.61509	-0.27258	-0.00015696	0.37057	0.00021338	0.097994	5.6426E-05	575.8149461201991	68.932	1.0658	68.932	68.606	69.672	0	0.12981	0.00021294	NaN	17.365	82	25	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6883800			41929	12051	34610	34634							0.04626715235690426
PCPTDRSPLL	10	Unmodified	_PCPTDRSPLL_					0	0	0			REV__ENST00000589200.2_3_19:1997432-2013830:-|nuORF	REV__ENST00000589200.2_3_19:1997432-2013830:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.2977294921875	2	549.784241	1097.55393	1.1873	0.00065273	1.2896	0.00070902	2.4769	0.0013618	549.784771196264	109.28	0.88415	109.28	108.93	109.81	0					26	19	2	0	0	0	0.026931	1	12449	12449		45.972	22.93	1	143760	+		41930	27902	34611	34635	45412	45412					0.009054817372543766
PCPTSYRTA	9	Unmodified	_PCPTSYRTA_					0	0	0		ENSG00000127948|ENST00000461988|POR;ENST00000487247.5_1_7:75612990-75614618:+|nuORF	ENSG00000127948|ENST00000461988|POR	ENSG00000127948|ENST00000461988|POR	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.2341613769531	2	498.234384	994.454216	0.40846	0.00020351	0.094351	4.7009E-05	0.50281	0.00025052	498.23435324202984	111.06	1.3683	109.46	109.02	110.38	-1.6011					42	25	3	0	0	0	0.29717	1	10230	10230		63.306	4.5243	1	125120			41931	3853	34612	34636	45413	45413					-0.04323335876688361
PCRALEPTH	9	Unmodified	_PCRALEPTH_					0	0	0			REV__nc|ENSG00000171992|Q8N3V7|SYNPO	REV__nc|ENSG00000171992|Q8N3V7|SYNPO	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.2547607421875	2	512.255651	1022.49675	-0.66624	-0.00034129	-3.9855	-0.0020416	-4.6518	-0.0023829	512.253528475125	87.1	2.3549	84.473	83.957	86.312	-2.6269					166	46	5	0	0	0	0.48324	1	7410	7410		44.117	2.6902	1	2034900	+		41932	29006	34613	34637	45414	45414					-0.013599407484548465
PCRALKVSL	9	Unmodified	_PCRALKVSL_					0	0	0			REV__ENSG00000088053|ENST00000310373|GP6	REV__ENSG00000088053|ENST00000310373|GP6	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.3039245605469	2	493.794412	985.574271	-0.02959	-1.4611E-05	-3.2516	-0.0016056	-3.2812	-0.0016202	493.7927233282372	105.1	1.3871	104.66	103.76	105.15	-0.43642					34	27	2	0	0	0	0.027462	1	9781	9781		32.812	0	1	47176	+		41933	17171	34614	34638	45415	45415					0.08090697187731166
PCRIEPAPKW	10	Unmodified	_PCRIEPAPKW_					0	0	0			REV__ENSG00000134070|ENST00000256458|IRAK2	REV__ENSG00000134070|ENST00000256458|IRAK2	MULTI-SECPEP	OvCa9_classI_Rep3	3	597.8304443359375	2	598.815876	1195.6172	1.7645	0.0010566	2.856	0.0017102	4.6205	0.0027668	598.817971895205	107.49	0.83519	106.23	106	106.83	-1.267					20	15	2	0	0	0	0.027056	1	7698	7698		27.882	1.1893	1	34133	+		41934	19172	34615	34639	45416	45416					0.02721467245146414
PCRLLTKII	9	Unmodified	_PCRLLTKII_					0	0	0			REV__ENSG00000183625|ENST00000395940|CCR3	REV__ENSG00000183625|ENST00000395940|CCR3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.3164672851562	2	528.833537	1055.65252	-3.117	-0.0016484	-0.92741	-0.00049044	-4.0444	-0.0021388	528.8326578573372	126.38	0.6368	124.96	124.63	125.27	-1.4143					18	12	2	0	0	0	0.027462	1	12059	12059		32.812	9.7699	1	9813.5	+		41935	22372	34616	34640	45417	45417					0.12692129772949556
PCRLTRLA	8	Unmodified	_PCRLTRLA_					0	0	0			REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26;REV__ZFYVE26-NEMF|1|fusion	REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-SECPEP	OvCa9_classI_Rep2	2	465.28692626953125	2	465.271104	928.527655	0.38721	0.00018016	1.5134	0.00070416	1.9007	0.00088432	465.27036778256183	125.06	0.59238	124.82	124.57	125.16	-0.2359					18	11	2	0	0	0	0.028476	1	12207	12207		56.721	21.103	1	25694	+		41936	16911;32770	34617	34641	45418	45418					0.06053257356438735
PCRNGRMIL	9	Unmodified	_PCRNGRMIL_					0	0	0			REV__ENST00000509538.5_1_4:185578328-185578478:+|nuORF	REV__ENST00000509538.5_1_4:185578328-185578478:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	530.279541015625	2	530.281146	1058.54774	-1.1806	-0.00062605	-3.3128	-0.0017567	-4.4934	-0.0023827	530.2791627233665	122.04	1.4342	121.82	121.08	122.51	-0.21803					61	28	3	0	0	0	0.27546	1	11827	11827		65.803	16.267	1	120110	+		41937	26849	34618	34642	45419	45419					0.020806850247481634
PCRPAPLW	8	Unmodified	_PCRPAPLW_					0	0	0			REV__ENST00000361298.8_2_X:102631318-102631966:+|nuORF	REV__ENST00000361298.8_2_X:102631318-102631966:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.2085876464844	2	470.247098	938.479642	-0.18939	-8.9062E-05	-0.30493	-0.00014339	-0.49432	-0.00023245	470.248177145159	40.699	0.31166	40.699	40.526	40.838	0					8	6	2	0	0	0	0.028476	1	2489	2489		29.842	0	1	29239	+		41938	24845	34619	34643	45420	45420					0.007941834363919043
PCRPCVRSP	9	Unmodified	_PCRPCVRSP_					0	0	0		ENST00000568395.1_1_16:2721378-2721618:-|nuORF	ENST00000568395.1_1_16:2721378-2721618:-|nuORF	ENST00000568395.1_1_16:2721378-2721618:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.81427001953125	2	507.752221	1013.48989	-0.88236	-0.00044802	-3.4738	-0.0017638	-4.3561	-0.0022118	507.75035740765196	97.73	1.2605	95.97	95.311	96.572	-1.7595					50	24	3	0	0	0	0.027217	1	6425	6425		82.241	0	1	76710			41939	13869	34620	34644	45421	45421					-0.0163157690068374
PCRRAPAPP	9	Unmodified	_PCRRAPAPP_					0	0	0			REV__ENST00000560975.5_1_15:63335715-63353895:+|nuORF	REV__ENST00000560975.5_1_15:63335715-63353895:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	483.2928466796875	2	482.760904	963.507254	-0.79882	-0.00038564	-4.086	-0.0019726	-4.8849	-0.0023582	482.75882396420764	90.943	1.5728	88.863	88.056	89.629	-2.0805					63	30	4	0	0	0	0.027449	1	5599	5599		50.025	0	1	272330	+		41940	27629	34621	34645	45422	45422					0.02404086696617469
PCRRAPAPP	9	Unmodified	_PCRRAPAPP_					0	0	0			REV__ENST00000560975.5_1_15:63335715-63353895:+|nuORF	REV__ENST00000560975.5_1_15:63335715-63353895:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	482.760904	963.507254	2.3941	0.0011558	0.30281	0.00014618	2.6969	0.001302	482.7608733629209	89.039	0.19899	89.039	88.883	89.082	0	0.094213	0.0052988	NaN	50.025	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103750	+		41941	27629	34621	34645							0.02404086696617469
PCRRGMMTL	9	Unmodified	_PCRRGMMTL_					0	0	0		ENST00000460856.5_2_3:124066044-124103719:+|nuORF	ENST00000460856.5_2_3:124066044-124103719:+|nuORF	ENST00000460856.5_2_3:124066044-124103719:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	532.7633056640625	2	532.761732	1063.50891	1.0974	0.00058466	1.7317	0.0009226	2.8291	0.0015073	532.7625104763312	113.64	2.2165	112.57	112.01	114.22	-1.0753					113	43	4	0	0	0	0.50149	1	8395	8395		42.396	3.59	1	496900			41942	12161	34622	34646	45423	45423					-0.020303636012613424
PCRWAGLHVK	10	Unmodified	_PCRWAGLHVK_					0	0	0		ENST00000302362.10_2_17:30179076-30179157:-|nuORF	ENST00000302362.10_2_17:30179076-30179157:-|nuORF	ENST00000302362.10_2_17:30179076-30179157:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	584.3045043945312	2	583.81621	1165.61787	-3.0663	-0.0017902	3.1301	0.0018274	0.063817	3.7257E-05	583.8172922183677	87.925	0.65151	85.322	85.028	85.679	-2.6027					15	12	2	0	0	0	0.027056	1	7454	7454		20.947	0	1	20366			41943	10197	34623	34647	45424	45424					0.041683066848236194
PCSPRQPAPA	10	Unmodified	_PCSPRQPAPA_					0	0	0		ENST00000599429.5_1_19:17448434-17449065:+|nuORF;ENST00000598038.5_1_19:17448361-17449192:+|nuORF;ENST00000324894.12_1_19:17448434-17449192:+|nuORF;ENST00000596218.5_1_19:17448036-17449192:+|nuORF;ENST00000594345.5_1_19:17447879-17449192:+|nuORF;ENST00000600610.5_1_19:17448460-17449192:+|nuORF;ENST00000596001.5_1_19:17448603-17449192:+|nuORF	ENST00000599429.5_1_19:17448434-17449065:+|nuORF	ENST00000599429.5_1_19:17448434-17449065:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	512.2549438476562	2	512.255651	1022.49675	-0.86994	-0.00044563	-3.1739	-0.0016259	-4.0439	-0.0020715	512.2539630058868	86.701	3.116	84.524	83.979	87.095	-2.1768					189	61	5	0	0	0	0.66721	1	5189	5189		34.173	1.3601	1	2198600			41944	10399	34624	34648	45425	45425					-0.013599407484662152
PCSQHRTLV	9	Unmodified	_PCSQHRTLV_					0	0	0		nc|ENSG00000006468|P50549-5|ETV1	nc|ENSG00000006468|P50549-5|ETV1	nc|ENSG00000006468|P50549-5|ETV1	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.7674560546875	2	520.768926	1039.5233	-0.65675	-0.00034201	-4.4642	-0.0023248	-5.1209	-0.0026668	520.7665431506473	77.263	2.5418	74.447	74.096	76.638	-2.8165					142	52	5	0	0	0	0.40667	1	6213	6213		51.335	1.3109	1	4845700			41945	14859	34625	34649	45426	45426					0.005117481428669635
PCTESPQVSQ	10	Unmodified	_PCTESPQVSQ_					0	0	0			REV__nc|ENSG00000117139|Q9UGL1-2|KDM5B	REV__nc|ENSG00000117139|Q9UGL1-2|KDM5B	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.8125	2	538.239864	1074.46517	-0.85078	-0.00045792	1.4883	0.00080107	0.63753	0.00034314	538.240608806926	28.165	0.29911	28.165	28.041	28.34	0					9	5	2	0	0	0	0.026895	1	910	910		87.696	25.589	1	63743	+		41946	18338	34626	34650	45427	45427					-0.06907978293065753
PCTFRAPARH	10	Unmodified	_PCTFRAPARH_					0	0	0			REV__nc|ENSG00000204469|P48634-2|PRRC2A	REV__nc|ENSG00000204469|P48634-2|PRRC2A	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.2886352539062	2	578.295642	1154.57673	-7.0214	-0.0040605	-3.3601	-0.0019431	-10.381	-0.0060036	578.2935937226971	160.38	4.1596	158.77	158.05	162.21	-1.6101					391	105	5	0	0	0	0.6104	1	16111	16111		40.778	0.71999	1	1912500	+		41947	29102	34627	34651	45428	45428					0.005625456453799416
PCVEPSIEP	9	Unmodified	_PCVEPSIEP_					0	0	0			REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A	REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.3119812011719	2	485.731143	969.447733	0.33436	0.00016241	1.6411	0.00079714	1.9755	0.00095954	485.7318119249816	109.67	1.0531	108.02	107.65	108.7	-1.6514					31	19	2	0	0	0	0.027462	1	10032	10032		31.955	0	1	43939	+		41948	16986	34628	34652	45429	45429					-0.03821273828066296
PCVEPSIEP	9	Unmodified	_PCVEPSIEP_					0	0	0			REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A	REV__nc|ENSG00000076108|Q9UIF9-2|BAZ2A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	485.731143	969.447733	0.18738	9.1018E-05	1.6551	0.00080392	1.8425	0.00089494	485.7318387068604	108.26	0.93849	108.04	107.58	108.52	-0.22498	0.0070491	6.7951E-06	NaN	30.504	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16734	+		41949	16986	34628	34652							-0.03821273828066296
PCVLSRSLL	9	Unmodified	_PCVLSRSLL_					0	0	0		ENSG00000135040|ENST00000361671|NAA35	ENSG00000135040|ENST00000361671|NAA35	ENSG00000135040|ENST00000361671|NAA35	MULTI-MSMS	OvCa9_classI_Rep2	2	494.2851867675781	2	494.28642	986.558287	-0.096989	-4.7941E-05	-0.33924	-0.00016768	-0.43623	-0.00021562	494.28606431515385	83.612	2.4718	82.013	81.369	83.841	-1.5988					133	49	4	0	0	0	0.12365	2	7138	7138;7213		90.777	5.8611	1	1379300			41950	4350	34629	34653	45430;45431	45430					0.0644699095081478
PCVLSRSLL	9	Unmodified	_PCVLSRSLL_					0	0	0		ENSG00000135040|ENST00000361671|NAA35	ENSG00000135040|ENST00000361671|NAA35	ENSG00000135040|ENST00000361671|NAA35	MULTI-MSMS	OvCa9_classI_Rep3	3	494.2863464355469	2	494.28642	986.558287	-1.2403	-0.00061306	0.87686	0.00043342	-0.36342	-0.00017964	494.28670132933	84.122	2.6507	81.861	81.346	83.997	-2.261					153	54	4	0	0	0	0.12365	1	4818	4818		90.777	3.0224	1	2419900			41951	4350	34629	34653	45432	45432					0.0644699095081478
PCYCIVLQ	8	Unmodified	_PCYCIVLQ_					0	0	0			REV__ENST00000379979.8_1_5:95150221-95150392:-|nuORF	REV__ENST00000379979.8_1_5:95150221-95150392:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	469.7517395019531	2	469.727349	937.440145	0.40766	0.00019149	2.9784	0.001399	3.386	0.0015905	469.72847833577515	68.902	0.39166	65.411	65.262	65.654	-3.4902					10	7	2	0	0	0	0.028476	1	5126	5126		54.765	3.4292	1	15449	+		41952	25171	34630	34654	45433	45433					-0.03107704629348973
PDALGPTTAH	10	Unmodified	_PDALGPTTAH_					0	0	0		nc|ENSG00000171798|Q76NI1-4|KNDC1;ENSG00000171798|ENST00000304613|KNDC1	nc|ENSG00000171798|Q76NI1-4|KNDC1	nc|ENSG00000171798|Q76NI1-4|KNDC1	MULTI-MSMS	OvCa9_classI_Rep2	2	490.24468994140625	2	490.245806	978.47706	-1.2971	-0.00063592	-0.0036646	-1.7965E-06	-1.3008	-0.00063771	490.24574571549454	62.48	3.0118	59.721	59.187	62.199	-2.7593					88	57	2	0	0	0	0.66721	1	4721	4721		34.173	2.2177	1	956700			41953	7234	34631	34655	45434	45434					-0.013039934875791914
PDAPPEWRL	9	Unmodified	_PDAPPEWRL_					0	0	0			REV__ENSG00000168334|ENST00000340369|XIRP1	REV__ENSG00000168334|ENST00000340369|XIRP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	539.79736328125	2	540.777274	1079.53999	-0.48961	-0.00026477	-3.0679	-0.001659	-3.5575	-0.0019238	540.7754424262836	64.529	1.4536	61.804	61.389	62.843	-2.7245					46	27	2	0	0	0	0.027462	1	4915	4915		35.618	21.843	1	47346	+		41954	21365	34632	34656	45435	45435					0.003405723004561878
PDARLLAGCEG	11	Unmodified	_PDARLLAGCEG_					0	0	0		ENST00000473880.5_1_7:102109277-102110330:+|nuORF;ENSG00000161036|ENST00000292616|LRWD1	ENST00000473880.5_1_7:102109277-102110330:+|nuORF	ENST00000473880.5_1_7:102109277-102110330:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.2608642578125	2	551.271498	1100.52844	0.27222	0.00015007	-0.084352	-4.6501E-05	0.18787	0.00010357	551.2715539010466	63.252	0.27624	63.252	63.1	63.376	0					11	6	2	0	0	0	0.025814	1	5687	5687		41.427	18.847	1	200210			41955	6118	34633	34657	45436	45436					-0.017799927851683606
PDATGWWY	8	Unmodified	_PDATGWWY_					0	0	0			REV__HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|28|2|sense	REV__HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|28|2|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.7715759277344	2	498.216517	994.418482	-0.36605	-0.00018237	-1.7458	-0.00086979	-2.1118	-0.0010522	498.21502223516916	102.88	0.78549	100.68	100.36	101.14	-2.1994					22	14	2	0	0	0	0.028476	1	9239	9239		37.028	24.069	1	20385	+		41956	28294	34634	34658	45437	45437					-0.07895050062052178
PDAVQRAR	8	Unmodified	_PDAVQRAR_					0	0	0		ENST00000487903.5_1_13:113526059-113532532:+|nuORF;ENST00000493489.1_1_13:113527819-113532532:+|nuORF;ENST00000495930.1_1_13:113527819-113530362:+|nuORF	ENST00000487903.5_1_13:113526059-113532532:+|nuORF	ENST00000487903.5_1_13:113526059-113532532:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.7721862792969	2	456.754133	911.493713	-0.83249	-0.00038024	0.59625	0.00027234	-0.23624	-0.0001079	456.75431914517156	42.311	0.92132	39.331	39.011	39.933	-2.9804					34	17	3	0	0	0	0.028476	1	1917	1917		21.96	9.753	1	60013			41957	12657	34635	34659	45438	45438					0.034425521890511845
PDCCAPAPPK	10	Unmodified	_PDCCAPAPPK_					0	0	0			REV__ENSG00000101440|ENST00000374954|ASIP	REV__ENSG00000101440|ENST00000374954|ASIP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.8008728027344	2	499.725338	997.436123	-0.77467	-0.00038712	-0.80521	-0.00040238	-1.5799	-0.00078951	499.72479399684534	51.373	0.85416	48.199	47.972	48.826	-3.1734					23	16	2	0	0	0	0.026635	1	3085	3085		24.519	0	1	50611	+		41958	17503	34636	34660	45439	45439					-0.06269794123056727
PDCPHLLEEP	10	Unmodified	_PDCPHLLEEP_					0	0	0		ENSG00000264006|ENST00000648824|AKR1C8	ENSG00000264006|ENST00000648824|AKR1C8	ENSG00000264006|ENST00000648824|AKR1C8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.2942504882812	2	575.265881	1148.51721	-0.5179	-0.00029793	0.0090819	5.2245E-06	-0.50882	-0.00029271	575.2658166591028	74.804	1.0138	71.574	71.289	72.302	-3.2308					34	20	2	0	0	0	0.026665	1	5937	5937		34.173	0	1	64427			41959	9516	34637	34661	45440	45440					-0.051108148792991415
PDDPWFNK	8	Unmodified	_PDDPWFNK_					0	0	0			REV__DNM2|p.R318W|1|0.48|ENSG00000079805|chr19:10786666-10786666|C/T|missense_variant	REV__DNM2|p.R318W|1|0.48|ENSG00000079805|chr19:10786666-10786666|C/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.2695617675781	2	509.735074	1017.4556	0.069558	3.5456E-05	-0.67428	-0.0003437	-0.60472	-0.00030825	509.73449487604654	31.051	0.33762	31.051	30.881	31.218	0					12	6	3	0	0	0	0.028476	1	1243	1243		26.796	11.931	1	70457	+		41960	16322	34638	34662	45441	45441					-0.05243378516286157
PDDSCNPRSVY	11	Unmodified	_PDDSCNPRSVY_					0	0	0		nc|ENSG00000188199|A6NNL0-2|NUTM2B;nc|ENSG00000184923|Q8IVF1-2|NUTM2A;ENSG00000214562|ENST00000381697|NUTM2D;ENSG00000228570|ENST00000429984|NUTM2E;ENSG00000188199|ENST00000429828|NUTM2B;ENSG00000184923|ENST00000381707|NUTM2A	nc|ENSG00000188199|A6NNL0-2|NUTM2B	nc|ENSG00000188199|A6NNL0-2|NUTM2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	627.3225708007812	2	626.766777	1251.519	-0.36575	-0.00022924	4.3331	0.0027158	3.9673	0.0024866	627.7722148497324	38.867	0.31122	38.867	38.661	38.972	0					15	6	3	0	0	0	0.02605	1	2219	2219		23.523	3.5259	1	98388			41961	8202	34639	34663	45442	45442					-0.0966980586133559
PDEGRLRG	8	Unmodified	_PDEGRLRG_					0	0	0			REV__ENST00000560958.1_1_15:83395247-83395832:-|nuORF	REV__ENST00000560958.1_1_15:83395247-83395832:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.5844421386719	2	450.238316	898.462078	-0.15023	-6.7641E-05	0.22575	0.00010164	0.075513	3.3999E-05	450.24020988995613	52.191	0.13103	52.191	52.083	52.214	0					4	2	2	0	0	0	0.028476	1	4076	4076		18.324	11.131	1	26122	+		41962	27627	34640	34664	45443	45443					0.008785594351024884
PDELGFGSSL	10	Unmodified	_PDELGFGSSL_					0	0	0			REV__ENST00000436135.1_1_1:158495283-158495625:+|nuORF	REV__ENST00000436135.1_1_1:158495283-158495625:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	511.2250671386719	2	511.245472	1020.47639	0.80465	0.00041138	-1.9075	-0.00097522	-1.1029	-0.00056384	511.2448463895967	42.602	0.39454	39.892	39.67	40.065	-2.7097					9	7	2	0	0	0	0.026639	1	2321	2321		27.882	0	1	9433.6	+		41963	25782	34641	34665	45444	45444					-0.03302832927272448
PDELRSYSS	9	Unmodified	_PDELRSYSS_					0	0	0			REV__chr6:43005466-43012926|126|18.75|0.24|6.27|-|1|TE_info:AluJr,AluJr_dup26583,Alu,SINE,acceptor,-,43005291,43005466|None,MEA1|1	REV__chr6:43005466-43012926|126|18.75|0.24|6.27|-|1|TE_info:AluJr,AluJr_dup26583,Alu,SINE,acceptor,-,43005291,43005466|None,MEA1|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.3434448242188	2	527.246003	1052.47745	-1.4382	-0.00075826	2.4159	0.0012738	0.97771	0.00051549	527.2470758940865	70.06	0.40643	70.06	69.84	70.246	0					17	9	3	0	0	0	0.027462	1	6714	6714		44.117	14.967	1	407890	+		41964	16080	34642	34666	45445	45445					-0.046686185583666884
PDENNKVYLSK	11	Unmodified	_PDENNKVYLSK_					0	0	0		tr|A0A553SHW0|A0A553SHW0_NIACIDUF4179domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13715PE=4SV=1	tr|A0A553SHW0|A0A553SHW0_NIACIDUF4179domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13715PE=4SV=1	tr|A0A553SHW0|A0A553SHW0_NIACIDUF4179domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13715PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	436.2607421875	3	436.226103	1305.65648	0.031077	1.3556E-05	-1.8957	-0.00082696	-1.8646	-0.0008134	436.55827209288407	64.243	0.3682	61.519	61.389	61.758	-2.7245					8	6	2	0	0	0	0.025466	1	4887	4887		44.639	22.859	1	17643			41965	33319	34643	34667	45446	45446					0.015878460097155767
PDEPLLPKQ	9	Unmodified	_PDEPLLPKQ_					0	0	0			REV__ENST00000488874.1_1_22:40391391-40393947:+|nuORF	REV__ENST00000488874.1_1_22:40391391-40393947:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	518.79150390625	2	518.787307	1035.56006	0.3455	0.00017924	2.4215	0.0012562	2.767	0.0014355	518.7886960694296	151.8	1.0014	151.8	151.4	152.4	0					43	20	3	0	0	0	0.50149	1	17753	17753		42.396	5.237	1	223380	+		41966	26630	34644	34668	45447	45447					0.04370323240414109
PDEPRKGLK	9	Unmodified	_PDEPRKGLK_					0	0	0			REV__nc|ENSG00000115648|Q9BV36-5|MLPH	REV__nc|ENSG00000115648|Q9BV36-5|MLPH	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3275756835938	2	520.298373	1038.58219	-0.22096	-0.00011497	3.5676	0.0018562	3.3467	0.0017413	520.3001723438233	115.89	1.6775	114.49	114.22	115.9	-1.3977					56	32	2	0	0	0	0.027462	1	10832	10832		42.396	14.514	1	203230	+		41967	18262	34645	34669	45448	45448					0.064445477088384
PDFEDVWEPGG	11	Unmodified	_PDFEDVWEPGG_					0	0	0		nc|ENSG00000248383|Q9H158-2|PCDHAC1;ENSG00000248383|ENST00000253807|PCDHAC1	nc|ENSG00000248383|Q9H158-2|PCDHAC1	nc|ENSG00000248383|Q9H158-2|PCDHAC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.5155334472656	3	416.512021	1246.51423	2.7046	0.0011265	2.7239	0.0011345	5.4285	0.002261	416.51295998414207	85.834	0.44831	85.834	85.585	86.033	0					13	10	2	0	0	0	0.025508	1	9023	9023		41.08	26.386	1	171610			41968	9406	34646	34670	45449	45449					-0.099163667324774
PDFPKRLL	8	Unmodified	_PDFPKRLL_					0	0	0		nc|ENSG00000228970|P0CB48|UBTFL6	nc|ENSG00000228970|P0CB48|UBTFL6	nc|ENSG00000228970|P0CB48|UBTFL6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.3055114746094	2	493.295102	984.575651	0.83945	0.00041409	-1.1857	-0.00058488	-0.34621	-0.00017078	493.29448069995703	114.31	1.3923	112.86	112.58	113.97	-1.4461					50	26	3	0	0	0	0.028476	1	10742	10742		15.642	0	1	167670			41969	15326	34647	34671	45450	45450					0.08274654548142735
PDFRGQKL	8	Unmodified	_PDFRGQKL_					0	0	0		tr|A0A553SGT5|A0A553SGT5_NIACI[RibosomalproteinbS18]-alanineN-acetyltransferaseOS=NialliacirculansOX=1397GN=rimIPE=3SV=1	tr|A0A553SGT5|A0A553SGT5_NIACI[RibosomalproteinbS18]-alanineN-acetyltransferaseOS=NialliacirculansOX=1397GN=rimIPE=3SV=1	tr|A0A553SGT5|A0A553SGT5_NIACI[RibosomalproteinbS18]-alanineN-acetyltransferaseOS=NialliacirculansOX=1397GN=rimIPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.7693176269531	2	480.766709	959.518865	0.11463	5.511E-05	-0.42615	-0.00020488	-0.31152	-0.00014977	480.76637305248687	56.948	2.4306	53.603	52.668	55.098	-3.3449					134	47	4	0	0	0	0.60331	1	3699	3699		63.306	5.495	1	828540			41970	33195	34648	34672	45451	45451					0.03748606991609904
PDGCLVKRLL	10	Unmodified	_PDGCLVKRLL_					0	0	0			REV__nc|ENSG00000176225|Q86VV8-3|RTTN	REV__nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-MSMS	OvCa99_classI_Rep5	1	557.3253784179688	2	557.326076	1112.6376	1.2486	0.0006959	-3.1093	-0.0017329	-1.8607	-0.001037	557.3242736095807	124.26	1.4143	124.26	123.92	125.33	0					90	31	4	0	0	0	0.24425	2	14323	14323;14373		87.696	5.4559	1	10010000	+		41971	21942	34649	34673	45452;45453	45452					0.08578637904952302
PDGDEPRCD	9	Unmodified	_PDGDEPRCD_					0	0	0			REV__ENSG00000204301|ENST00000375023|NOTCH4	REV__ENSG00000204301|ENST00000375023|NOTCH4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.7890319824219	2	502.192913	1002.37127	-1.2277	-0.00061654	-1.3127	-0.00065921	-2.5404	-0.0012758	502.19213686799776	55.495	1.4207	52.201	51.7	53.12	-3.2944					51	27	2	0	0	0	0.027462	1	3568	3568		14.137	0	1	28303	+		41972	23140	34650	34674	45454	45454					-0.1298169739535524
PDGDLHLVK	9	Unmodified	_PDGDLHLVK_					0	0	0			REV__tr|A0A553SHH7|A0A553SHH7_NIACISporulationpeptidaseYabGOS=NialliacirculansOX=1397GN=yabGPE=4SV=1	REV__tr|A0A553SHH7|A0A553SHH7_NIACISporulationpeptidaseYabGOS=NialliacirculansOX=1397GN=yabGPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.83074951171875	2	497.271824	992.529095	-0.29698	-0.00014768	-1.0039	-0.00049922	-1.3009	-0.0006469	497.27152499885324	90.957	0.308	88.382	88.161	88.469	-2.575					7	5	2	0	0	0	0.027417	1	7837	7837		65.803	25.025	1	5123.3	+		41973	29804	34651	34675	45455	45455					0.03253169926199462
PDGGAKLLKRR	11	Unmodified	_PDGGAKLLKRR_					0	0	0			REV__ENSG00000171843|ENST00000380338|MLLT3	REV__ENSG00000171843|ENST00000380338|MLLT3	MULTI-MSMS	OvCa9_classI_Rep3	3	605.8701782226562	2	605.872571	1209.73059	-4.4328	-0.0026857	3.4628	0.002098	-0.96995	-0.00058766	605.8745511795182	157.17	1.2501	156	155.65	156.91	-1.1707					83	31	4	0	0	0	0.72516	1	13603	13603		13.454	1.943	1	204530	+		41974	21651	34652	34676	45456	45456					0.13411278682542616
PDGKECVVKEV	11	Unmodified	_PDGKECVVKEV_					0	0	0		nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	402.259521484375	3	401.541034	1201.60127	2.367	0.00095043	4.0839	0.0016398	6.4508	0.0025903	401.54249586634137	64.863	0.68147	61.378	60.822	61.504	-3.4854					22	13	2	0	0	0	0.025701	1	4580	4580		15.337	5.6913	1	29328			41975	1070	34653	34677	45457	45457					0.008537162176025959
PDGSDSLKF	9	Unmodified	_PDGSDSLKF_					0	0	0			REV__ENSG00000164853|ENST00000316333|UNCX	REV__ENSG00000164853|ENST00000316333|UNCX	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.255126953125	2	483.232364	964.450176	-0.40296	-0.00019472	-2.4023	-0.0011609	-2.8052	-0.0013556	483.2308310447795	63.736	0.47701	60.261	59.868	60.345	-3.475					12	9	2	0	0	0	0.027462	1	4504	4504		45.952	8.7928	1	22224	+		41976	21026	34654	34678	45458	45458					-0.03347102098746291
PDGVAAGRRR	10	Unmodified	_PDGVAAGRRR_					0	0	0		SVA_D_dup912|chr11:73935626-73937666:-|1.861451030615439|0.3832838640500095|2.28|429.0|78|3|anti-sense	SVA_D_dup912|chr11:73935626-73937666:-|1.861451030615439|0.3832838640500095|2.28|429.0|78|3|anti-sense	SVA_D_dup912|chr11:73935626-73937666:-|1.861451030615439|0.3832838640500095|2.28|429.0|78|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.8275146484375	2	527.796863	1053.57917	-0.61602	-0.00032514	-3.7184	-0.0019626	-4.3344	-0.0022877	527.7950834930571	55.219	0.824	55.219	54.98	55.804	0					39	19	3	0	0	0	0.026915	1	4506	4506		27.882	0	1	605020			41977	32933	34655	34679	45459	45459					0.05452717374691929
PDHLLVCAV	9	Unmodified	_PDHLLVCAV_					0	0	0		ENSG00000196208|ENST00000381486|GREB1;GREB1|p.A269Vfs*27|1|0.27|ENSG00000196208|chr2:11580737-11580752|CAATGGGTCCGGCTGT/-|frameshift_variant;nc|ENSG00000196208|Q4ZG55-3|GREB1;nc|ENSG00000196208|Q4ZG55-2|GREB1	ENSG00000196208|ENST00000381486|GREB1	ENSG00000196208|ENST00000381486|GREB1	MULTI-MSMS	OvCa99_classI_Rep5	1	483.75909423828125	2	483.757495	965.500437	1.787	0.00086446	1.3145	0.00063589	3.1014	0.0015003	483.75798479305814	134.7	2.7244	134.7	134.34	137.06	0					135	58	4	0	0	0	0.39645	1	15756	15756		52.299	5.5327	1	4346500			41978	8577	34656	34680	45460	45460					0.016307290253848805
PDHLPGDTHL	10	Unmodified	_PDHLPGDTHL_					0	0	0			REV__ENSG00000156140|ENST00000286657|ADAMTS3	REV__ENSG00000156140|ENST00000286657|ADAMTS3	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.8192749023438	2	551.269813	1100.52507	-0.1184	-6.5273E-05	4.1058	0.0022634	3.9874	0.0021981	551.2719891493585	46.576	0.39349	46.576	46.326	46.719	0					14	8	2	0	0	0	0.026665	1	3264	3264		60.972	33.09	1	309290	+		41979	20462	34657	34681	45461	45461					-0.021169195675156516
PDHPDNYF	8	Unmodified	_PDHPDNYF_					0	0	0			REV__nc|ENSG00000058085|Q13753-2|LAMC2	REV__nc|ENSG00000058085|Q13753-2|LAMC2	MULTI-MSMS	OvCa99_classI_Rep5	1	502.7080993652344	2	502.709057	1003.40356	1.1488	0.00057753	-3.1416	-0.0015793	-1.9928	-0.0010018	502.7073803498088	145.54	0.70364	145.54	145.27	145.98	0					27	14	3	0	0	0	0.7043	1	17021	17021		42.474	3.6683	1	74191	+		41980	16725	34658	34682	45462	45462					-0.09800541930042073
PDHQQLTRAAR	11	Unmodified	_PDHQQLTRAAR_					0	0	0		nc|ENSG00000137135|Q8N4T4-2|ARHGEF39;nc|ENSG00000137135|Q8N4T4-4|ARHGEF39;ENSG00000137135|ENST00000378387|ARHGEF39	nc|ENSG00000137135|Q8N4T4-2|ARHGEF39	nc|ENSG00000137135|Q8N4T4-2|ARHGEF39	MULTI-MSMS	OvCa99_classI_Rep5	1	647.3538818359375	2	646.844542	1291.67453	1.2073	0.00078093	3.8398	0.0024837	5.0471	0.0032647	646.8465561230544	139.25	1.4317	139.25	138.88	140.31	0					63	29	3	0	0	0	0.6112	1	16249	16249		43.651	4.398	1	199940			41981	4561	34659	34683	45463	45463					0.040360257750762685
PDHSPLLQP	9	Unmodified	_PDHSPLLQP_					0	0	0		ENSG00000137561|ENST00000260116|TTPA	ENSG00000137561|ENST00000260116|TTPA	ENSG00000137561|ENST00000260116|TTPA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.2804870605469	2	502.263999	1002.51345	-0.23472	-0.00011789	1.9996	0.0010043	1.7648	0.00088641	502.26365628620977	90.213	1.3274	87.638	87.348	88.676	-2.575					48	25	3	0	0	0	0.027441	1	7818	7818		49.442	16.629	1	73890			41982	4597	34660	34684	45464	45464					0.012288834091350509
PDIASETLTLL	11	Unmodified	_PDIASETLTLL_					0	0	0		ENSG00000110237|ENST00000263674|ARHGEF17;ARHGEF17|p.G1624Rfs*4|1|0.4|ENSG00000110237|chr11:73362607-73362608|-/A|frameshift_variant;ARHGEF17|p.Y1216Sfs*5|1|0.09|ENSG00000110237|chr11:73355937-73355937|A/-|frameshift_variant	ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	MULTI-MSMS	OvCa9_classI_Rep2	2	586.8226928710938	2	586.824086	1171.63362	-3.1356	-0.00184	2.3317	0.0013683	-0.8039	-0.00047175	586.8253279417393	148.8	1.3036	148.57	148.17	149.47	-0.22696					68	25	4	0	0	0	0.70865	1	15063	15063		26.693	1.1189	1	137330			41983	110	34661	34685	45465	45465					0.05466826892256904
PDIFFQAR	8	Unmodified	_PDIFFQAR_					0	0	0		tr|A0A7D6VRY2|A0A7D6VRY2_9CLOTPyruvate:ferredoxinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=nifJPE=3SV=1	tr|A0A7D6VRY2|A0A7D6VRY2_9CLOTPyruvate:ferredoxinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=nifJPE=3SV=1	tr|A0A7D6VRY2|A0A7D6VRY2_9CLOTPyruvate:ferredoxinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=nifJPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.7895812988281	2	497.261259	992.507966	-1.1808	-0.00058719	-1.9943	-0.00099167	-3.1751	-0.0015789	497.2598473764524	45.037	0.46491	41.999	41.765	42.23	-3.0385					13	8	2	0	0	0	0.028476	1	2290	2290		31.955	1.4512	1	11740			41984	34964	34662	34686	45466	45466					0.011412046173290946
PDIFFQAR	8	Unmodified	_PDIFFQAR_					0	0	0		tr|A0A7D6VRY2|A0A7D6VRY2_9CLOTPyruvate:ferredoxinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=nifJPE=3SV=1	tr|A0A7D6VRY2|A0A7D6VRY2_9CLOTPyruvate:ferredoxinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=nifJPE=3SV=1	tr|A0A7D6VRY2|A0A7D6VRY2_9CLOTPyruvate:ferredoxinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=nifJPE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	497.261259	992.507966	-0.93333	-0.00046411	-4.0359	-0.0020069	-4.9692	-0.002471	497.25887770607244	42.001	0.21451	42.001	41.853	42.068	0	0.0012049	-0.0007933	NaN	17.365	9	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48036			41985	34964	34662	34686							0.011412046173290946
PDIIAHLKSI	10	Unmodified	_PDIIAHLKSI_					0	0	0			REV__nc|ENSG00000112742|P33981-2|TTK	REV__nc|ENSG00000112742|P33981-2|TTK	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8294067382812	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.67931	1	11747	11747		32.812	6.1195	1	308210	+		41986	16083	34663	34687	45467	45467					0.10094577919812764
PDILGSLEQL	10	Unmodified	_PDILGSLEQL_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;ENST00000532027.5_1_11:6568031-6569307:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-MSMS	OvCa9_classI_Rep3	3	542.7968139648438	2	542.797872	1083.58119	-2.5657	-0.0013927	1.6016	0.00086937	-0.96407	-0.00052329	542.7985901751956	143.31	1.137	142.32	141.94	143.08	-0.9903					51	22	3	0	0	0	0.71173	1	11924	11924		29.17	0.020503	1	119450			41987	7829	34664	34688	45468	45468					0.042742885492771165
PDKEAVDALW	10	Unmodified	_PDKEAVDALW_					0	0	0			REV__ENSG00000100726|ENST00000262319|TELO2	REV__ENSG00000100726|ENST00000262319|TELO2	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.3522338867188	2	572.287671	1142.56079	-0.81404	-0.00046587	-2.1974	-0.0012575	-3.0114	-0.0017234	572.286265391806	28.663	0.59753	28.663	28.39	28.987	0					19	11	3	0	0	0	0.026891	1	965	965		31.53	13.205	1	216560	+		41988	17447	34665	34689	45469	45469					-0.004788821105421448
PDKIPWVV	8	Unmodified	_PDKIPWVV_					0	0	0			REV__ENSG00000124143|ENST00000373345|ARHGAP40	REV__ENSG00000124143|ENST00000373345|ARHGAP40	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.7947998046875	2	477.276378	952.538203	0.6826	0.00032579	-0.097223	-4.6402E-05	0.58538	0.00027939	477.27592422713843	111.69	1.1528	110.18	109.89	111.05	-1.5111					44	21	3	0	0	0	0.028476	1	10328	10328		25.45	14.585	1	124110	+		41989	18664	34666	34690	45470	45470					0.060035632825247376
PDKLVGKR	8	Unmodified	_PDKLVGKR_					0	0	0			REV__ENSG00000135090|ENST00000392533|TAOK3	REV__ENSG00000135090|ENST00000392533|TAOK3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.2702941894531	2	456.784902	911.55525	-0.72383	-0.00033063	0.6358	0.00029042	-0.088028	-4.021E-05	456.78519606800245	45.959	0.57532	42.886	42.613	43.189	-3.0724					15	10	2	0	0	0	0.028476	1	2399	2399		13.775	0	1	11276	+		41990	19256	34667	34691	45471	45471					0.09593483888318133
PDKYSTSQLLS	11	Unmodified	_PDKYSTSQLLS_					0	0	0			REV__ENSG00000158077|ENST00000299481|NLRP14	REV__ENSG00000158077|ENST00000299481|NLRP14	MULTI-SECPEP	OvCa99_classI_Rep5	1	618.8348999023438	2	619.816793	1237.61903	1.9998	0.0012395	1.0222	0.00063357	3.022	0.0018731	620.319325464016	79.926	0.32184	79.926	79.827	80.148	0					11	7	2	0	0	0	0.025594	1	8198	8198		33.922	6.0394	1	248040	+		41991	20546	34668	34692	45472	45472					0.009727547441116258
PDLASLRK	8	Unmodified	_PDLASLRK_					0	0	0		nc|ENSG00000144488|Q6ZVH7-3|ESPNL;nc|ENSG00000144488|Q6ZVH7-2|ESPNL;ENSG00000144488|ENST00000343063|ESPNL;ENST00000477241.1_1_2:239037864-239040370:+|nuORF	nc|ENSG00000144488|Q6ZVH7-3|ESPNL	nc|ENSG00000144488|Q6ZVH7-3|ESPNL	MULTI-MSMS	OvCa9_classI_Rep3	3	450.2680358886719	2	450.269084	898.523616	1.9084	0.0008593	-1.9638	-0.00088423	-0.055366	-2.4929E-05	450.26807810544716	61.38	1.5642	58.311	57.573	59.137	-3.0685					65	43	2	0	0	0	0.73938	1	2083	2083		31.955	3.7006	1	26008			41992	5154	34669	34693	45473	45473					0.07029491134380805
PDLDSDSW	8	Unmodified	_PDLDSDSW_					0	0	0		ENST00000555405.5_1_14:75551269-75558248:-|nuORF;ENST00000557026.5_1_14:75551269-75572727:-|nuORF;ENSG00000119638|ENST00000238616|NEK9	ENST00000555405.5_1_14:75551269-75558248:-|nuORF	ENST00000555405.5_1_14:75551269-75558248:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	467.6036376953125	2	467.693072	933.371591	-0.25463	-0.00011909	3.6767	0.0017196	3.4221	0.0016005	467.6946918912009	39.98	1.1261	37.026	36.715	37.841	-2.9541					34	21	2	0	0	0	0.028476	1	1763	1763		26.796	2.5934	1	90342			41993	3376	34670	34694	45474	45474					-0.09775954403846754
PDLDSDSW	8	Unmodified	_PDLDSDSW_					0	0	0		ENST00000555405.5_1_14:75551269-75558248:-|nuORF;ENST00000557026.5_1_14:75551269-75572727:-|nuORF;ENSG00000119638|ENST00000238616|NEK9	ENST00000555405.5_1_14:75551269-75558248:-|nuORF	ENST00000555405.5_1_14:75551269-75558248:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	467.693072	933.371591	-0.39727	-0.0001858	4.1607	0.0019459	3.7635	0.0017601	467.69483162669167	39.946	0.74639	37.237	37.052	37.798	-2.7097	0.10525	0.00020899	NaN	26.796	22	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26188			41994	3376	34670	34694							-0.09775954403846754
PDLEMIPSL	9	Unmodified	_PDLEMIPSL_					0	0	0			REV__ENST00000457478.1_1_2:2900342-2900972:-|nuORF	REV__ENST00000457478.1_1_2:2900342-2900972:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7624816894531	2	507.762443	1013.51033	0.48571	0.00024663	0.13825	7.02E-05	0.62397	0.00031683	507.76242082287587	126.44	3.901	126.2	123.43	127.33	-0.2359					157	78	4	0	0	0	0.31747	1	12385	12385		60.972	0	1	953460	+		41995	26048	34671	34695	45475	45475					0.004118722401244668
PDLGCFNFFRE	11	Unmodified	_PDLGCFNFFRE_					0	0	0			REV__ENSG00000125898|ENST00000381941|FAM110A	REV__ENSG00000125898|ENST00000381941|FAM110A	MULTI-MSMS	OvCa99_classI_Rep5	1	448.87274169921875	3	448.872895	1343.59686	1.8356	0.00082396	-3.2622	-0.0014643	-1.4266	-0.00064037	448.8712903541899	109.3	0.88483	109.3	109.02	109.9	0					45	19	3	0	0	0	0.69735	1	12378	12378		30.569	1.9921	1	1077500	+		41996	18757	34672	34696	45476	45476					-0.06119748205333053
PDLGCFNFFRE	11	Unmodified	_PDLGCFNFFRE_					0	0	0			REV__ENSG00000125898|ENST00000381941|FAM110A	REV__ENSG00000125898|ENST00000381941|FAM110A	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	448.872895	1343.59686	1.8356	0.00082396	-3.2622	-0.0014643	-1.4266	-0.00064037	448.8712903541899	109.3	0.88483	109.3	109.02	109.9	0	-0.10568	0.00055172	NaN	30.569	45	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1077500	+		41997	18757	34672	34696							-0.06119748205333053
PDLGCFNFFRE	11	Unmodified	_PDLGCFNFFRE_					0	0	0			REV__ENSG00000125898|ENST00000381941|FAM110A	REV__ENSG00000125898|ENST00000381941|FAM110A	MULTI-MATCH	OvCa9_classI_Rep2	2		3	448.872895	1343.59686	2.6905	0.0012077	-5.2096	-0.0023385	-2.5191	-0.0011307	448.8703692514621	109.69	0.79211	109.52	109.22	110.01	-0.17237	0.11121	-0.0020706	NaN	30.569	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32043	+		41998	18757	34672	34696							-0.06119748205333053
PDLGCFNFFRE	11	Unmodified	_PDLGCFNFFRE_					0	0	0			REV__ENSG00000125898|ENST00000381941|FAM110A	REV__ENSG00000125898|ENST00000381941|FAM110A	MULTI-MATCH	OvCa9_classI_Rep3	3		3	448.872895	1343.59686	0.73326	0.00032914	-3.4227	-0.0015364	-2.6895	-0.0012072	448.8712462066289	110.55	1.0822	109.41	108.98	110.06	-1.1444	-0.0013592	0.00033559	NaN	30.569	27	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35185	+		41999	18757	34672	34696							-0.06119748205333053
PDLGCFNFFRE	11	Unmodified	_PDLGCFNFFRE_					0	0	0			REV__ENSG00000125898|ENST00000381941|FAM110A	REV__ENSG00000125898|ENST00000381941|FAM110A	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	448.872895	1343.59686	1.0931	0.00049068	-3.7619	-0.0016886	-2.6688	-0.0011979	448.87096323034854	111.01	0.89442	109.41	109.12	110.02	-1.6011	-0.0041682	-0.0001211	NaN	30.569	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36910	+		42000	18757	34672	34696							-0.06119748205333053
PDLGLLKLA	9	Unmodified	_PDLGLLKLA_					0	0	0		ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	MULTI-MSMS	OvCa9_classI_Rep2	2	470.2959289550781	2	470.29731	938.580068	-0.49251	-0.00023162	-2.9033	-0.0013654	-3.3958	-0.001597	470.29591238963496	32.315	1.7376	29.606	29.382	31.119	-2.7097					90	34	5	0	0	0	0.67509	1	1095	1095		23.042	1.3402	1	1326000			42001	3991	34673	34697	45477	45477					0.1083211897101819
PDLKELLPSVK	11	Unmodified	_PDLKELLPSVK_					0	0	0		nc|ENSG00000070366|Q86US8-3|SMG6;ENSG00000070366|ENST00000263073|SMG6	nc|ENSG00000070366|Q86US8-3|SMG6	nc|ENSG00000070366|Q86US8-3|SMG6	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8674926757812	2	619.871371	1237.72819	-3.1788	-0.0019704	0.11399	7.0661E-05	-3.0648	-0.0018998	619.8711859647292	147.21	3.9856	146.98	144.83	148.82	-0.22696					207	79	4	0	0	0	0.72479	1	15012	15012		18.262	1.7889	1	163200			42002	1424	34674	34698	45478	45478					0.11883385434202864
PDLLEESDI	9	Unmodified	_PDLLEESDI_					0	0	0			REV__ENST00000560974.3_1_15:69126737-69127085:+|nuORF	REV__ENST00000560974.3_1_15:69126737-69127085:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	515.7501220703125	2	515.750587	1029.48662	0.78461	0.00040466	1.178	0.00060757	1.9626	0.0010122	515.7511516443681	131.35	1.919	131.12	130.7	132.62	-0.22696					91	38	4	0	0	0	0.38529	1	12972	12972		53.351	0	1	572010	+		42003	27628	34675	34699	45479	45479					-0.02694269992707632
PDLLYQVRH	9	Unmodified	_PDLLYQVRH_					0	0	0		nc|ENSG00000009413|O60673-2|REV3L;ENSG00000009413|ENST00000368802|REV3L	nc|ENSG00000009413|O60673-2|REV3L	nc|ENSG00000009413|O60673-2|REV3L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	570.2952270507812	2	570.811648	1139.60874	-0.99777	-0.00056954	0.79242	0.00045232	-0.20535	-0.00011721	570.8118468248111	44.477	0.40717	41.439	41.156	41.564	-3.0385					9	7	2	0	0	0	0.027462	1	2199	2199		10.866	0	1	53042			42004	929	34676	34700	45480	45480					0.04452236600195647
PDLQSRGEL	9	Unmodified	_PDLQSRGEL_					0	0	0		ENST00000512908.2_1_5:70398727-70422449:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP;ENSG00000249437|ENST00000517649|NAIP	ENST00000512908.2_1_5:70398727-70422449:-|nuORF	ENST00000512908.2_1_5:70398727-70422449:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.76171875	2	507.764363	1013.51417	-0.75433	-0.00038302	-1.6017	-0.00081327	-2.356	-0.0011963	507.7634972764376	115.15	1.4832	115.03	114.8	116.28	-0.11777					77	29	3	0	0	0	0.50149	1	10967	10967		42.396	3.59	1	179880			42005	9409	34677	34701	45481	45481					0.00795678058204885
PDLRCSPVN	9	Unmodified	_PDLRCSPVN_					0	0	0		nc|ENSG00000151718|Q6AWC2-6|WWC2;nc|ENSG00000151718|Q6AWC2-5|WWC2;nc|ENSG00000151718|Q6AWC2-2|WWC2;nc|ENSG00000151718|Q6AWC2-4|WWC2;ENSG00000151718|ENST00000403733|WWC2	nc|ENSG00000151718|Q6AWC2-6|WWC2	nc|ENSG00000151718|Q6AWC2-6|WWC2	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.7520446777344	2	500.747659	999.480765	-0.80732	-0.00040426	0.98465	0.00049306	0.17733	8.8798E-05	501.25039717836626	97.692	0.74551	95.933	95.672	96.417	-1.7595					17	14	2	0	0	0	0.027462	1	6476	6476		15.642	0	1	25963			42006	15094	34678	34702	45482	45482					-0.01899646985361869
PDLTRNLN	8	Unmodified	_PDLTRNLN_					0	0	0			REV__ENSG00000141298|ENST00000540801|SSH2	REV__ENSG00000141298|ENST00000540801|SSH2	MULTI-SECPEP	OvCa9_classI_Rep2	2	471.29266357421875	2	471.753798	941.493044	0.30674	0.00014471	0.56572	0.00026688	0.87246	0.00041159	471.7539614229628	81.088	0.70477	79.44	79.215	79.919	-1.6485					16	13	2	0	0	0	0.028476	1	6924	6924		55.504	31.301	1	14230	+		42007	19725	34679	34703	45483	45483					0.019957127493171356
PDMLHSAIL	9	Unmodified	_PDMLHSAIL_					0	0	0		tr|A0A553SQ47|A0A553SQ47_NIACIDEAD/DEAHboxhelicaseOS=NialliacirculansOX=1397GN=CEQ21_20270PE=4SV=1	tr|A0A553SQ47|A0A553SQ47_NIACIDEAD/DEAHboxhelicaseOS=NialliacirculansOX=1397GN=CEQ21_20270PE=4SV=1	tr|A0A553SQ47|A0A553SQ47_NIACIDEAD/DEAHboxhelicaseOS=NialliacirculansOX=1397GN=CEQ21_20270PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.78973388671875	2	498.762778	995.511002	-0.55299	-0.00027581	-2.8851	-0.001439	-3.4381	-0.0017148	498.7627251601731	115.12	0.29631	115.01	114.85	115.14	-0.11777					7	5	2	0	0	0	0.027326	1	10971	10971		88.643	5.3557	1	11230			42008	34118	34680	34704	45484	45484					0.013067116798310963
PDMTPRAAR	9	Unmodified	_PDMTPRAAR_					0	0	0			REV__ENST00000511502.5_1_1:1550926-1563560:+|nuORF	REV__ENST00000511502.5_1_1:1550926-1563560:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.76300048828125	2	507.761101	1013.50765	-0.40189	-0.00020406	4.2812	0.0021738	3.8793	0.0019698	507.7630820065088	122.28	4.4632	120.91	119.72	124.19	-1.3666					201	87	4	0	0	0	0.53483	1	11618	11618		39.253	1.4413	1	136110	+		42009	26897	34681	34705	45485	45485					0.0014346162581659883
PDNAIELESDL	11	Unmodified	_PDNAIELESDL_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-MSMS	OvCa99_classI_Rep5	1	608.2891845703125	2	608.290608	1214.56666	2.2084	0.0013433	-2.1599	-0.0013138	0.048449	2.9471E-05	608.2892090028116	112.84	0.63148	112.84	112.52	113.15	0					31	13	3	0	0	0	0.67712	1	12857	12857		37.508	3.3356	1	458100	+		42010	20262	34682	34706	45486	45486					-0.03203828389496266
PDNAIELESDL	11	Unmodified	_PDNAIELESDL_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	608.290608	1214.56666	2.2084	0.0013433	-2.1599	-0.0013138	0.048449	2.9471E-05	608.2892090028116	112.84	0.63148	112.84	112.52	113.15	0	-0.12509	0.00023458	NaN	37.508	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	458100	+		42011	20262	34682	34706							-0.03203828389496266
PDNAIELESDL	11	Unmodified	_PDNAIELESDL_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-MATCH	OvCa9_classI_Rep2	2		2	608.290608	1214.56666	0.16514	0.00010045	-3.0204	-0.0018373	-2.8553	-0.0017368	608.2885030199901	113.21	0.49399	113.09	112.82	113.31	-0.12174	0.12509	-0.00081232	NaN	37.508	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12609	+		42012	20262	34682	34706							-0.03203828389496266
PDNEPKEIV	9	Unmodified	_PDNEPKEIV_					0	0	0			REV__ENSG00000071051|ENST00000233154|NCK2	REV__ENSG00000071051|ENST00000233154|NCK2	MULTI-MSMS	OvCa9_classI_Rep3	3	520.7672119140625	2	520.766571	1039.51859	-0.63486	-0.00033061	0.077139	4.0171E-05	-0.55772	-0.00029044	520.766555060983	76.275	3.5537	73.903	73.518	77.072	-2.3715					215	69	5	0	0	0	0.35444	1	3947	3947		56.721	3.7844	1	4347000	+		42013	16896	34683	34707	45487	45487					0.0004114248110909102
PDNFVFGKR	9	Unmodified	_PDNFVFGKR_					0	0	0		ENST00000489942.1_1_6:3155224-3157697:-|nuORF	ENST00000489942.1_1_6:3155224-3157697:-|nuORF	ENST00000489942.1_1_6:3155224-3157697:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.7677612304688	2	540.285266	1078.55598	-0.49023	-0.00026486	-3.4417	-0.0018595	-3.9319	-0.0021244	540.2833364802457	38.387	0.63667	38.387	38.069	38.705	0					15	13	2	0	0	0	0.027462	1	2207	2207		37.812	7.4938	1	29872			42014	12689	34684	34708	45488	45488					0.019842785373839433
PDNHVRID	8	Unmodified	_PDNHVRID_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-SECPEP	OvCa9_classI_Rep2	2	482.265380859375	2	483.243598	964.472643	-0.71069	-0.00034344	-4.3773	-0.0021153	-5.088	-0.0024588	483.2400430639023	75.56	0.30624	73.706	73.481	73.788	-1.854					10	5	3	0	0	0	0.028476	1	6205	6205		19.997	0	1	11582			42015	3261	34685	34709	45489	45489					-0.011014579104767108
PDNIKLHIL	9	Unmodified	_PDNIKLHIL_					0	0	0		tr|A0A7D6ZZL4|A0A7D6ZZL4_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06545PE=4SV=1	tr|A0A7D6ZZL4|A0A7D6ZZL4_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06545PE=4SV=1	tr|A0A7D6ZZL4|A0A7D6ZZL4_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06545PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8182983398438	2	531.818941	1061.62333	0.089047	4.7357E-05	-3.7428	-0.0019905	-3.6538	-0.0019431	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.52083	1	13626	13626		40.573	8.6178	1	263230			42016	35965	34686	34710	45490	45490					0.09498308748334239
PDNSRLPPDID	11	Unmodified	_PDNSRLPPDID_					0	0	0			REV__nc|ENSG00000171105|P06213-2|INSR	REV__nc|ENSG00000171105|P06213-2|INSR	MULTI-MSMS	OvCa99_classI_Rep5	1	619.8021850585938	2	619.804217	1237.59388	1.2503	0.00077496	-3.4204	-0.00212	-2.17	-0.001345	619.8012975038282	93.555	0.70461	93.555	93.346	94.051	0					29	16	2	0	0	0	0.50761	1	10170	10170		53.089	1.5612	1	1486200	+		42017	21592	34687	34711	45491	45491					-0.015413000584885594
PDNSRLPPDID	11	Unmodified	_PDNSRLPPDID_					0	0	0			REV__nc|ENSG00000171105|P06213-2|INSR	REV__nc|ENSG00000171105|P06213-2|INSR	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	619.804217	1237.59388	1.2503	0.00077496	-3.4204	-0.00212	-2.17	-0.001345	619.8012975038282	93.555	0.70461	93.555	93.346	94.051	0	0	0	NaN	53.089	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1486200	+		42018	21592	34687	34711							-0.015413000584885594
PDPKLLEKV	9	Unmodified	_PDPKLLEKV_					0	0	0		ENSG00000206190|ENST00000555815|ATP10A	ENSG00000206190|ENST00000555815|ATP10A	ENSG00000206190|ENST00000555815|ATP10A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3275756835938	2	519.813325	1037.6121	-0.16826	-8.7463E-05	-0.0037168	-1.932E-06	-0.17198	-8.9395E-05	519.8131845073513	115.97	0.79192	114.6	114.2	114.99	-1.3645					22	15	2	0	0	0	0.027462	1	10832	10832		24.203	4.206	1	23484			42019	9096	34688	34712	45492	45492					0.09479486654186076
PDPPPFQN	8	Unmodified	_PDPPPFQN_					0	0	0		TRIM28-CSMD1|1|fusion;CSMD1|p.Y2458Efs*21|1|0.08|ENSG00000183117|chr8:3087202-3087203|-/TGAAAATTTC|frameshift_variant;nc|ENSG00000183117|Q96PZ7-2|CSMD1;ENSG00000183117|ENST00000635120|CSMD1	TRIM28-CSMD1|1|fusion	TRIM28-CSMD1|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.25848388671875	2	456.216517	910.418482	-1.0412	-0.00047502	1.4391	0.00065654	0.39787	0.00018151	456.2169617775591	50.545	1.0761	47.38	47.056	48.132	-3.165					31	20	2	0	0	0	0.028476	1	2920	2920		51.335	12.529	1	27523			42020	36275	34689	34713	45493	45493					-0.04031050062042141
PDPRTGTRVFL	11	Unmodified	_PDPRTGTRVFL_					0	0	0		ENST00000498438.1_1_2:176973662-176973713:+|nuORF	ENST00000498438.1_1_2:176973662-176973713:+|nuORF	ENST00000498438.1_1_2:176973662-176973713:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	420.2344665527344	3	420.234933	1257.68297	1.4258	0.00059916	-1.6693	-0.00070152	-0.24357	-0.00010236	420.23426080527724	91.222	3.0164	89.987	89.439	92.456	-1.2355					163	57	5	0	0	0	0.62561	1	8118	8118		42.338	3.0852	1	1547900			42021	12824	34690	34714	45494	45494					0.06443579691699597
PDQAAPPL	8	Unmodified	_PDQAAPPL_					0	0	0		ENST00000590399.1_1_19:11482505-11485421:-|nuORF	ENST00000590399.1_1_19:11482505-11485421:-|nuORF	ENST00000590399.1_1_19:11482505-11485421:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.22833251953125	2	404.713611	807.412668	1.4619	0.00059166	-0.6845	-0.00027703	0.77742	0.00031463	404.71349563952515	62.551	0.48834	62.551	62.253	62.741	0					18	11	2	0	0	0	0.028476	1	5573	5573		45.952	0	1	465900			42022	14104	34691	34715	45495	45495					0.0012585142626448942
PDQKECPPI	9	Unmodified	_PDQKECPPI_					0	0	0		nc|ENSG00000188687|Q9BY07-6|SLC4A5;nc|ENSG00000188687|Q9BY07-5|SLC4A5;nc|ENSG00000188687|Q9BY07-4|SLC4A5;nc|ENSG00000188687|Q9BY07-8|SLC4A5;ENST00000451608.2_1_2:74452054-74542150:-|nuORF;ENSG00000188687|ENST00000394019|SLC4A5;nc|ENSG00000188687|Q9BY07|SLC4A5;nc|ENSG00000188687|Q9BY07-2|SLC4A5	nc|ENSG00000188687|Q9BY07-6|SLC4A5	nc|ENSG00000188687|Q9BY07-6|SLC4A5	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.808349609375	2	513.749867	1025.48518	0.19643	0.00010092	-0.60946	-0.00031311	-0.41303	-0.00021219	513.7495377328352	110.41	1.0866	110.23	109.96	111.04	-0.17237					39	21	3	0	0	0	0.027455	1	10422	10422		51.335	0	1	38469			42023	8493	34692	34716	45496	45496					-0.026541825624462945
PDQQLHRWL	9	Unmodified	_PDQQLHRWL_					0	0	0			REV__chr12:25681-26801|184|16.24|0.59|4.79|-|0|None,WASH8P|1	REV__chr12:25681-26801|184|16.24|0.59|4.79|-|0|None,WASH8P|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	596.8180541992188	2	596.814722	1191.61489	-0.18377	-0.00010967	2.6145	0.0015604	2.4307	0.0014507	596.8162215131191	55.836	1.824	52.541	51.906	53.73	-3.2944					104	35	4	0	0	0	0.56889	1	3514	3514		35.618	6.4687	1	1109000	+		42024	15875	34693	34717	45497	45497					0.026747548317189285
PDQSFTVKQ	9	Unmodified	_PDQSFTVKQ_					0	0	0			REV__nc|ENSG00000130202|Q92692-2|NECTIN2	REV__nc|ENSG00000130202|Q92692-2|NECTIN2	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.2905883789062	2	525.266739	1048.51892	-0.0045106	-2.3693E-06	1.3035	0.0006847	1.299	0.00068233	525.2674641086477	31.648	0.59194	28.939	28.641	29.233	-2.7097					18	11	3	0	0	0	0.027462	1	948	948		20.947	0	1	15040	+		42025	18929	34694	34718	45498	45498					-0.00339437799038933
PDRIMNTF	8	Unmodified	_PDRIMNTF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;TUBB4A|p.M330Afs*87|1|0.08|ENSG00000104833|chr19:6495510-6495511|AT/-|frameshift_variant;ENSG00000104833|ENST00000264071|TUBB4A	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;TUBB4A|p.M330Afs*87|1|0.08|ENSG00000104833|chr19:6495510-6495511|AT/-|frameshift_variant	ENSG00000258947|ENST00000315491|TUBB3	MULTI-MSMS	OvCa99_classI_Rep5	1	497.2460021972656	2	497.244752	992.474951	2.3157	0.0011515	-0.23147	-0.0001151	2.0842	0.0010364	497.2445204082967	100.6	1.4983	100.6	100.28	101.78	0					98	35	5	0	0	0	0.31378	2	11140	11140;11170		104.75	16.992	1	7402400			42026	9485;8579;2396	34695	34719	45499;45500	45499					-0.02158745497035852
PDRIVTPAPA	10	Unmodified	_PDRIVTPAPA_					0	0	0			REV__ENSG00000159259|ENST00000314103|CHAF1B	REV__ENSG00000159259|ENST00000314103|CHAF1B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.333740234375	2	518.792924	1035.57129	-0.47083	-0.00024427	2.0555	0.0010664	1.5847	0.00082214	519.2938274756831	77.826	0.24174	75.009	74.825	75.067	-2.8165					6	4	2	0	0	0	0.026956	1	6244	6244		26.693	0	1	16337	+		42027	20604	34696	34720	45501	45501					0.05493145334548899
PDRPLLLN	8	Unmodified	_PDRPLLLN_					0	0	0			REV__nc|ENSG00000147804|Q6P5W5-2|SLC39A4	REV__nc|ENSG00000147804|Q6P5W5-2|SLC39A4	MULTI-SECPEP	OvCa99_classI_Rep5	1	468.28155517578125	2	469.276909	936.539266	0.51825	0.0002432	0.91344	0.00042866	1.4317	0.00067186	469.2773088863887	74.065	1.3592	74.065	73.276	74.635	0					39	34	2	0	0	0	0.028476	1	7309	7309		19.997	0	1	447290	+		42028	28917	34697	34721	45502	45502					0.06845777651426488
PDRQRLGQLSL	11	Unmodified	_PDRQRLGQLSL_					0	0	0			REV__ENST00000604081.1_1_12:54388338-54389007:-|nuORF	REV__ENST00000604081.1_1_12:54388338-54389007:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	641.867431640625	2	641.864943	1281.71533	0.63762	0.00040927	0.93046	0.00059723	1.5681	0.0010065	641.8655985353367	162.35	0.59143	162.35	161.97	162.56	0					34	11	4	0	0	0	0.41656	1	19050	19050		59.931	8.7381	1	6839800	+		42029	28055	34698	34722	45503	45503					0.08574367094706759
PDRSRRCLVI	10	Unmodified	_PDRSRRCLVI_					0	0	0			REV__nc|ENSG00000140391|O60637-3|TSPAN3	REV__nc|ENSG00000140391|O60637-3|TSPAN3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	404.90777587890625	3	405.564396	1213.67136	0.5267	0.00021361	4.384	0.001778	4.9107	0.0019916	405.900549378165	54.684	0.25707	51.437	51.285	51.542	-3.2474					6	4	2	0	0	0	0.026826	1	3407	3407		22.58	0	1	13687	+		42030	19666	34699	34723	45504	45504					0.07307059396703153
PDRVNDIAIL	10	Unmodified	_PDRVNDIAIL_					0	0	0		MED12|p.K1768Qfs*3|1|0.17|ENSG00000184634|chrX:71136550-71136551|-/C|frameshift_variant;nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	MED12|p.K1768Qfs*3|1|0.17|ENSG00000184634|chrX:71136550-71136551|-/C|frameshift_variant	MED12|p.K1768Qfs*3|1|0.17|ENSG00000184634|chrX:71136550-71136551|-/C|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	563.3524169921875	2	563.316763	1124.61897	-0.44123	-0.00024855	-3.8362	-0.002161	-4.2774	-0.0024095	563.3149598616345	116.11	0.24745	116	115.89	116.13	-0.11777					7	4	2	0	0	0	0.026723	1	11091	11091		68.787	12.066	1	6976.8			42031	8177	34700	34724	45505	45505					0.06164799534758458
PDSACPSLCF	10	Unmodified	_PDSACPSLCF_					0	0	0		ENST00000417220.6_1_3:51976394-51976544:+|nuORF	ENST00000417220.6_1_3:51976394-51976544:+|nuORF	ENST00000417220.6_1_3:51976394-51976544:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.2998657226562	2	520.214803	1038.41505	-1.1862	-0.0006171	3.5593	0.0018516	2.373	0.0012345	520.2171198149036	71.367	0.24773	67.911	67.727	67.975	-3.4563					5	4	2	0	0	0	0.027021	1	5443	5443		29.15	10.825	1	7778.1			42032	11619	34701	34725	45506	45506					-0.10261804222591309
PDSEAAPQV	9	Unmodified	_PDSEAAPQV_					0	0	0		chr2:219270335-219271311|162|12.46|0.56|4.49|+|2|TUBA4B,None|1	chr2:219270335-219271311|162|12.46|0.56|4.49|+|2|TUBA4B,None|1	chr2:219270335-219271311|162|12.46|0.56|4.49|+|2|TUBA4B,None|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.2777404785156	2	457.216714	912.418876	-0.31959	-0.00014612	-0.49609	-0.00022682	-0.81567	-0.00037294	457.2164116461084	55.528	0.40865	55.528	55.273	55.682	0					12	9	2	0	0	0	0.027462	1	4554	4554		21.96	0	1	189370			42033	438	34702	34726	45507	45507					-0.04083675132858389
PDSFRVVKL	9	Unmodified	_PDSFRVVKL_					0	0	0		ENSG00000163380|ENST00000420581|LMOD3	ENSG00000163380|ENST00000420581|LMOD3	ENSG00000163380|ENST00000420581|LMOD3	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.8104248046875	2	530.811116	1059.60768	1.2568	0.00066712	2.3164	0.0012296	3.5732	0.0018967	530.8121776672779	129.98	1.6761	128.5	128.12	129.79	-1.4779					73	33	3	0	0	0	0.3076	1	12469	12469		62.107	7.3427	1	95871			42034	6296	34703	34727	45508	45508					0.08026022231297247
PDSFRVVKL	9	Unmodified	_PDSFRVVKL_					0	0	0		ENSG00000163380|ENST00000420581|LMOD3	ENSG00000163380|ENST00000420581|LMOD3	ENSG00000163380|ENST00000420581|LMOD3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	530.811116	1059.60768	0.63787	0.00033859	3.227	0.0017129	3.8648	0.0020515	530.8127141088877	129.73	1.3352	128.62	128.24	129.57	-1.1121	0.059807	0.00040946	NaN	62.107	54	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48613			42035	6296	34703	34727							0.08026022231297247
PDSIREIL	8	Unmodified	_PDSIREIL_					0	0	0			REV__nc|ENSG00000065485|Q14554-2|PDIA5	REV__nc|ENSG00000065485|Q14554-2|PDIA5	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.3138122558594	2	471.766374	941.518196	1.7654	0.00083286	-0.81252	-0.00038332	0.95289	0.00044954	471.7659102383512	116.82	0.22491	116.82	116.73	116.95	0					6	4	2	0	0	0	0.028476	1	13372	13372		26.693	1.1189	1	36456	+		42036	16794	34704	34728	45509	45509					0.04509767551905952
PDSRLAPLP	9	Unmodified	_PDSRLAPLP_					0	0	0		ENST00000254950.12_1_16:69358555-69358738:+|nuORF	ENST00000254950.12_1_16:69358555-69358738:+|nuORF	ENST00000254950.12_1_16:69358555-69358738:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	483.82647705078125	2	483.274367	964.53418	-0.047088	-2.2756E-05	0.49979	0.00024153	0.4527	0.00021878	483.2746949173668	72.576	0.67865	70.176	69.907	70.585	-2.3999					17	12	2	0	0	0	0.027462	1	5916	5916		42.396	19.354	1	11268			42037	9818	34705	34729	45510	45510					0.05049473788801606
PDSRTQEL	8	Unmodified	_PDSRTQEL_					0	0	0		ENST00000337318.7_2_10:126309750-126310008:-|nuORF	ENST00000337318.7_2_10:126309750-126310008:-|nuORF	ENST00000337318.7_2_10:126309750-126310008:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	473.2371826171875	2	473.235439	944.456324	-0.077945	-3.6886E-05	-0.03099	-1.4666E-05	-0.10893	-5.1552E-05	473.23532007417225	61.137	0.55684	61.137	60.901	61.458	0					29	12	3	0	0	0	0.20102	1	5371	5371		124.59	0.51416	1	1406700			42038	10521	34706	34730	45511	45511					-0.018125838672517602
PDSSVYREL	9	Unmodified	_PDSSVYREL_					0	0	0		tr|A0A7D6VUK9|A0A7D6VUK9_9CLOTAcetolactatesynthasesmallsubunitOS=ClostridiumintestinaleOX=36845GN=ilvNPE=3SV=1	tr|A0A7D6VUK9|A0A7D6VUK9_9CLOTAcetolactatesynthasesmallsubunitOS=ClostridiumintestinaleOX=36845GN=ilvNPE=3SV=1	tr|A0A7D6VUK9|A0A7D6VUK9_9CLOTAcetolactatesynthasesmallsubunitOS=ClostridiumintestinaleOX=36845GN=ilvNPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.2381591796875	2	533.264196	1064.51384	-0.6013	-0.00032065	3.2043	0.0017087	2.603	0.0013881	533.7680668589209	53.631	0.21702	53.631	53.475	53.692	0					6	4	2	0	0	0	0.027462	1	4276	4276		29.15	0	1	126990			42039	35191	34707	34731	45512	45512					-0.015837416616705013
PDTALVVRA	9	Unmodified	_PDTALVVRA_					0	0	0			REV__ENSG00000165434|ENST00000298198|PGM2L1	REV__ENSG00000165434|ENST00000298198|PGM2L1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.783447265625	2	471.274367	940.53418	-0.6332	-0.00029841	0.005643	2.6594E-06	-0.62756	-0.00029575	471.2740847899747	72.903	0.19405	69.507	69.397	69.591	-3.3961					6	3	2	0	0	0	0.027426	1	5618	5618		53.351	21.822	1	18604	+		42040	21087	34708	34732	45513	45513					0.061534737887996016
PDTANLQIVL	10	Unmodified	_PDTANLQIVL_					0	0	0			REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10	REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10	MULTI-MSMS	OvCa99_classI_Rep5	1	542.307373046875	2	542.305864	1082.59717	-0.60545	-0.00032834	0.63249	0.000343	0.027035	1.4661E-05	542.3059389583028	68.308	0.9308	68.308	67.803	68.733	0					72	22	5	0	0	0	0.35465	1	6437	6437		74.255	0	1	5639000	+		42041	19554	34709	34733	45514	45514					0.05917994786182135
PDTANLQIVL	10	Unmodified	_PDTANLQIVL_					0	0	0			REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10	REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	542.305864	1082.59717	-0.60545	-0.00032834	0.63249	0.000343	0.027035	1.4661E-05	542.3059389583028	68.308	0.9308	68.308	67.803	68.733	0	0.048889	1.3892E-05	NaN	74.255	72	22	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5639000	+		42042	19554	34709	34733							0.05917994786182135
PDTANLQIVL	10	Unmodified	_PDTANLQIVL_					0	0	0			REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10	REV__nc|ENSG00000138650|Q9P2E7-2|PCDH10	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.305864	1082.59717	-0.21272	-0.00011536	0.35979	0.00019511	0.14707	7.9756E-05	542.8080802023267	70.781	0.25839	68.21	68.063	68.322	-2.5707	-0.048889	-0.00028189	NaN	74.255	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13761	+		42043	19554	34709	34733							0.05917994786182135
PDTNERVQQT	10	Unmodified	_PDTNERVQQT_					0	0	0			REV__nc|ENSG00000041988|Q8WTV1-4|THAP3	REV__nc|ENSG00000041988|Q8WTV1-4|THAP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.33154296875	2	594.286191	1186.55783	-0.96813	-0.00057535	-0.3337	-0.00019832	-1.3018	-0.00077366	594.2859279043071	64.152	0.36632	64.152	64.051	64.417	0					10	8	2	0	0	0	0.027001	1	5825	5825		35.152	25.446	1	162500	+		42044	16635	34710	34734	45515	45515					-0.027987572353367796
PDTNERVQT	9	Unmodified	_PDTNERVQT_					0	0	0			REV__nc|ENSG00000041988|Q8WTV1-3|THAP3	REV__nc|ENSG00000041988|Q8WTV1-3|THAP3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.3040771484375	2	530.256902	1058.49925	-1.094	-0.0005801	0.97637	0.00051773	-0.11764	-6.2378E-05	530.2573298808554	51.775	1.5065	48.601	48.323	49.829	-3.1734					59	29	4	0	0	0	0.027425	1	3034	3034		60.118	0	1	433750	+		42045	28711	34711	34735	45516	45516					-0.027658138098104246
PDTPPPLTYPE	11	Unmodified	_PDTPPPLTYPE_					0	0	0		ENST00000475733.5_1_1:160231091-160232104:-|nuORF	ENST00000475733.5_1_1:160231091-160232104:-|nuORF	ENST00000475733.5_1_1:160231091-160232104:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	613.7987670898438	2	613.800611	1225.58667	1.7268	0.0010599	-1.7027	-0.0010451	0.024146	1.4821E-05	613.7992173492992	126.94	0.76548	126.94	126.46	127.23	0					37	16	3	0	0	0	0.26031	1	14684	14684		71.877	10.186	1	310210			42046	12454	34712	34736	45517	45517					-0.017100326588888493
PDVDSNRLATI	11	Unmodified	_PDVDSNRLATI_					0	0	0		tr|A0A553STR8|A0A553STR8_NIACIAlpha/betahydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05410PE=4SV=1	tr|A0A553STR8|A0A553STR8_NIACIAlpha/betahydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05410PE=4SV=1	tr|A0A553STR8|A0A553STR8_NIACIAlpha/betahydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05410PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	601.79052734375	2	600.814584	1199.61462	1.9812	0.0011904	-3.9469	-0.0023714	-1.9657	-0.001181	600.8120834682902	108.84	0.3891	108.84	108.58	108.97	0					13	8	2	0	0	0	0.02557	1	12282	12282		18.262	0	1	116230			42047	34524	34713	34737	45518	45518					0.022792903211893645
PDVFPDPCP	9	Unmodified	_PDVFPDPCP_					0	0	0		ENSG00000150471|ENST00000683033|ADGRL3;nc|ENSG00000150471|Q9HAR2-2|ADGRL3;nc|ENSG00000150471|Q9HAR2|ADGRL3;nc|ENSG00000150471|Q9HAR2-4|ADGRL3;nc|ENSG00000150471|Q9HAR2-3|ADGRL3;ENST00000509089.1_1_4:62453105-62542754:+|nuORF	ENSG00000150471|ENST00000683033|ADGRL3	ENSG00000150471|ENST00000683033|ADGRL3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.7962646484375	2	493.718036	985.421518	0.28107	0.00013877	-3.1141	-0.0015375	-2.8331	-0.0013987	493.71601222903917	75.734	0.48421	72.795	72.643	73.128	-2.9389					16	9	2	0	0	0	0.027462	1	5992	5992		31.955	8.9124	1	31588			42048	5508	34714	34738	45519	45519					-0.07177542999556863
PDVMAPQHDQ	10	Unmodified	_PDVMAPQHDQ_					0	0	0		ENST00000488498.2_1_1:156377632-156377902:-|nuORF;nc|ENSG00000125462|Q13536|MIR9-1HG	ENST00000488498.2_1_1:156377632-156377902:-|nuORF	ENST00000488498.2_1_1:156377632-156377902:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.7847290039062	2	569.253305	1136.49206	2.3081	0.0013139	3.7024	0.0021076	6.0105	0.0034215	569.2553126870246	82.664	0.64145	82.664	82.351	82.992	0					27	14	3	0	0	0	0.026802	1	8578	8578		26.693	4.1133	1	473730			42049	12666	34715	34739	45520	45520					-0.07072869681883276
PDVPWRLL	8	Unmodified	_PDVPWRLL_					0	0	0		ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.7723693847656	2	498.287277	994.560001	-1.1447	-0.00057037	2.2018	0.0010971	1.0571	0.00052676	498.2899623232	71.782	0.58684	68.326	67.825	68.412	-3.4563					16	11	2	0	0	0	0.028476	1	5475	5475		33.516	15.191	1	21470			42050	7859	34716	34740	45521	45521					0.06250368031078324
PDVTGRRVPR	10	Unmodified	_PDVTGRRVPR_					0	0	0			REV__ENSG00000134516|ENST00000520908|DOCK2	REV__ENSG00000134516|ENST00000520908|DOCK2	MULTI-SECPEP	OvCa9_classI_Rep3	3	576.3535766601562	2	576.833446	1151.65234	-0.50096	-0.00028897	-1.193	-0.00068814	-1.6939	-0.00097711	576.8329683501814	72.018	0.39065	69.416	69.28	69.67	-2.6023					11	7	2	0	0	0	0.026494	1	3419	3419		41.427	0	1	32639	+		42051	19210	34717	34741	45522	45522					0.08257846097308175
PDVTRIGPS	9	Unmodified	_PDVTRIGPS_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-2|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	OvCa9_classI_Rep2	2	471.2554626464844	2	471.256174	940.497795	-1.3199	-0.00062201	1.0702	0.00050433	-0.2497	-0.00011767	471.25655204988306	51.241	1.5868	48.428	48.104	49.691	-2.8129					86	31	3	0	0	0	0.16524	1	3371	3371		82.305	4.9875	1	532950			42052	4713	34718	34742	45523	45523					0.025165968920873638
PDWAAPPG	8	Unmodified	_PDWAAPPG_					0	0	0			REV__ENST00000601530.1_1_19:49224057-49228265:-|nuORF	REV__ENST00000601530.1_1_19:49224057-49228265:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.9158630371094	2	405.692678	809.370804	1.3245	0.00053735	-2.6279	-0.0010661	-1.3033	-0.00052876	405.69179064381814	32.478	0.44682	32.478	32.204	32.651	0					10	8	2	0	0	0	0.028476	1	1420	1420		7.6903	2.4701	1	32979	+		42053	17734	34719	34743	45524	45524					-0.041507042622356494
PDWCPGLVPT	10	Unmodified	_PDWCPGLVPT_					0	0	0			REV__nc|ENSG00000220201|P0C6A0-1|ZGLP1	REV__nc|ENSG00000220201|P0C6A0-1|ZGLP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.7984008789062	2	542.760235	1083.50592	0.87941	0.00047731	-1.3947	-0.00075698	-0.51528	-0.00027968	542.759353719797	153.52	0.63179	153.52	153.3	153.93	0					20	12	3	0	0	0	0.026956	1	17990	17990		19.997	2.6318	1	62690	+		42054	23335	34720	34744	45525	45525					-0.0324959218278309
PDWSLKDGNAF	11	Unmodified	_PDWSLKDGNAF_					0	0	0		INTS9|p.G54D|1|0.49|ENSG00000104299|chr8:28850250-28850250|C/T|missense_variant	INTS9|p.G54D|1|0.49|ENSG00000104299|chr8:28850250-28850250|C/T|missense_variant	INTS9|p.G54D|1|0.49|ENSG00000104299|chr8:28850250-28850250|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	625.293212890625	2	625.296027	1248.5775	-4.4959	-0.0028113	1.016	0.00063531	-3.4799	-0.002176	625.2965199042848	153.36	0.97864	152.39	152.03	153.01	-0.97301					42	20	3	0	0	0	0.72297	1	13147	13147		12.812	9.8823	1	67090			42055	14508	34721	34745	45526	45526					-0.03684381224570643
PDWTIRLRNYW	11	Unmodified	_PDWTIRLRNYW_					0	0	0			REV__ENST00000432943.6_1_8:121160081-121289735:+|nuORF	REV__ENST00000432943.6_1_8:121160081-121289735:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.787841796875	3	507.265004	1518.77318	0.079874	4.0517E-05	2.2046	0.0011183	2.2844	0.0011588	507.26620456693075	32.642	0.29478	32.642	32.453	32.748	0					9	5	2	0	0	0	0.026113	1	1433	1433		18.531	0	1	51667	+		42056	22677	34722	34746	45527	45527					0.034546290201433294
PDYFQPLQL	9	Unmodified	_PDYFQPLQL_					0	0	0			REV__DOCK8|p.R493Nfs*16|1|0.09|ENSG00000107099|chr9:339061-339061|G/-|frameshift_variant	REV__DOCK8|p.R493Nfs*16|1|0.09|ENSG00000107099|chr9:339061-339061|G/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.8175659179688	2	560.787307	1119.56006	3.1231	0.0017514	-2.1188	-0.0011882	1.0043	0.0005632	560.786077469826	94.586	0.38591	94.586	94.39	94.776	0					13	8	2	0	0	0	0.027411	1	10288	10288		74.255	0	1	232070	+		42057	16332	34723	34747	45528	45528					0.005063232404381779
PDYREVINL	9	Unmodified	_PDYREVINL_					0	0	0			REV__nc|ENSG00000076321|Q9Y2M5-2|KLHL20	REV__nc|ENSG00000076321|Q9Y2M5-2|KLHL20	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.7970581054688	2	559.795663	1117.57677	1.8736	0.0010489	-2.3163	-0.0012967	-0.44269	-0.00024781	559.7942394240879	84.533	1.5747	81.87	81.118	82.693	-2.6629					77	32	4	0	0	0	0.37135	1	7065	7065		54.776	5.2403	1	1302200	+		42058	16988	34724	34748	45529	45529					0.022688241263722375
PDYRVQIVK	9	Unmodified	_PDYRVQIVK_					0	0	0			REV__ENST00000491898.5_1_6:43023672-43027146:-|nuORF	REV__ENST00000491898.5_1_6:43023672-43027146:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	559.7968139648438	2	559.321848	1116.62914	-1.4111	-0.00078924	0.39702	0.00022206	-1.014	-0.00056718	559.322876383725	84.265	0.41428	82.005	81.7	82.114	-2.261					13	8	2	0	0	0	0.027455	1	4878	4878		42.396	13.247	1	22756	+		42059	18110	34725	34749	45530	45530					0.07549407259989493
PDYRVQIVK	9	Unmodified	_PDYRVQIVK_					0	0	0			REV__ENST00000491898.5_1_6:43023672-43027146:-|nuORF	REV__ENST00000491898.5_1_6:43023672-43027146:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	559.321848	1116.62914	-0.0083064	-4.6459E-06	-2.2647	-0.0012667	-2.273	-0.0012714	559.3216334362544	83.693	0.15078	82.095	82.02	82.171	-1.5988	0.045037	-0.00070656	NaN	42.396	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3826.4	+		42060	18110	34725	34749							0.07549407259989493
PEAANYRVF	9	Unmodified	_PEAANYRVF_					0	0	0		ENSG00000125508|ENST00000217188|SRMS	ENSG00000125508|ENST00000217188|SRMS	ENSG00000125508|ENST00000217188|SRMS	MULTI-MSMS	OvCa9_classI_Rep3	3	533.7682495117188	2	533.769448	1065.52434	2.0153	0.0010757	0.68024	0.00036309	2.6955	0.0014388	533.7697670334758	63.654	1.2917	60.66	60.204	61.496	-2.9933					43	25	2	0	0	0	0.55588	1	2415	2415		37.159	6.6555	1	38322			42061	3713	34726	34750	45531	45531					-0.005797142165647529
PEAANYRVF	9	Unmodified	_PEAANYRVF_					0	0	0		ENSG00000125508|ENST00000217188|SRMS	ENSG00000125508|ENST00000217188|SRMS	ENSG00000125508|ENST00000217188|SRMS	MULTI-MATCH	OvCa9_classI_Rep2	2		2	533.769448	1065.52434	-2.6354	-0.0014067	4.7673	0.0025446	2.1319	0.0011379	533.7718758169933	63.16	1.0512	60.416	60.004	61.055	-2.7444	-0.10515	0.0034704	NaN	37.159	35	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46756			42062	3713	34726	34750							-0.005797142165647529
PEAANYRVF	9	Unmodified	_PEAANYRVF_					0	0	0		ENSG00000125508|ENST00000217188|SRMS	ENSG00000125508|ENST00000217188|SRMS	ENSG00000125508|ENST00000217188|SRMS	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	533.769448	1065.52434	-0.99702	-0.00053218	3.5919	0.0019172	2.5948	0.001385	533.7711193408904	63.962	1.1615	60.487	60.061	61.222	-3.475	-0.034081	0.0022156	NaN	37.159	33	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173890			42063	3713	34726	34750							-0.005797142165647529
PEACKDLR	8	Unmodified	_PEACKDLR_					0	0	0		ENST00000481860.6_1_11:119043673-119051967:+|nuORF;nc|ENSG00000160703|Q86UT6-2|NLRX1;ENSG00000160703|ENST00000409109|NLRX1	ENST00000481860.6_1_11:119043673-119051967:+|nuORF	ENST00000481860.6_1_11:119043673-119051967:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	466.2366638183594	2	466.236927	930.459301	0.31116	0.00014507	-0.31655	-0.00014759	-0.0053896	-2.5128E-06	466.23662450729495	43.901	2.5422	41.191	40.658	43.2	-2.7097					104	50	4	0	0	0	0.72896	1	2485	2485		37.159	0	1	381230			42064	6083	34727	34751	45532	45532					-0.00871032014094908
PEADLFDDVI	10	Unmodified	_PEADLFDDVI_					0	0	0		CON__Q3MHN2	CON__Q3MHN2	CON__Q3MHN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.8134765625	2	567.271687	1132.52882	2.8426	0.0016125	-3.7894	-0.0021496	-0.94687	-0.00053713	567.2694040455963	96.178	0.29892	96.178	95.997	96.296	0					11	6	2	0	0	0	0.026849	1	10518	10518		25.574	0	1	159940		+	42065	648	34728	34752	45533	45533					-0.03214294584313393
PEADSHVEVF	10	Unmodified	_PEADSHVEVF_					0	0	0		ENSG00000125841|ENST00000382285|NRSN2	ENSG00000125841|ENST00000382285|NRSN2	ENSG00000125841|ENST00000382285|NRSN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.2905883789062	2	565.261653	1128.50875	-0.23277	-0.00013157	-0.039748	-2.2468E-05	-0.27251	-0.00015404	565.2615456838943	59.816	0.42783	59.816	59.611	60.039	0					23	10	3	0	0	0	0.026915	1	5185	5185		35.618	0	1	724800			42066	3743	34729	34753	45534	45534					-0.05036045524275323
PEAFTILAKV	10	Unmodified	_PEAFTILAKV_					0	0	0		ENST00000528543.1_1_11:66283182-66287297:+|nuORF	ENST00000528543.1_1_11:66283182-66287297:+|nuORF	ENST00000528543.1_1_11:66283182-66287297:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	544.8203125	2	544.82115	1087.62775	-0.94668	-0.00051577	0.81422	0.0004436	-0.13246	-7.2168E-05	544.8214432628807	117.05	1.3369	116.02	115.7	117.03	-1.0324					73	26	4	0	0	0	0.5675	1	8798	8798		45.972	5.9141	1	405390			42067	13257	34730	34754	45535	45535					0.08743773171227076
PEAGAAKIDEL	11	Unmodified	_PEAGAAKIDEL_					0	0	0			REV__ENSG00000167671|ENST00000301281|UBXN6	REV__ENSG00000167671|ENST00000301281|UBXN6	MULTI-SECPEP	OvCa9_classI_Rep2	2	557.8458862304688	2	557.292953	1112.57135	2.1037	0.0011724	1.3035	0.00072642	3.4072	0.0018988	557.7948388570762	87.666	0.34151	86.234	86.09	86.431	-1.4311					10	6	2	0	0	0	0.025418	1	7661	7661		40.058	4.8575	1	16209	+		42068	21297	34731	34755	45536	45536					0.019571005438820066
PEAGGGGG	8	Unmodified	_PEAGGGGG_					0	0	0		MAP3K1|p.G1250Efs*23|1|0.04|ENSG00000095015|chr5:56883608-56883609|-/A|frameshift_variant;nc|ENSG00000151079|P17658|KCNA6;ENSG00000095015|ENST00000399503|MAP3K1	MAP3K1|p.G1250Efs*23|1|0.04|ENSG00000095015|chr5:56883608-56883609|-/A|frameshift_variant;ENSG00000095015|ENST00000399503|MAP3K1;REV__SDK1|p.G1830Rfs*24|1|0.09|ENSG00000146555|chr7:4210109-4210110|-/CAGACAATGGACTC|frameshift_variant;REV__ENST00000469930.1_1_7:140534396-140624503:-|nuORF;REV__SDK1|p.L1190Afs*107|1|0.14|ENSG00000146555|chr7:4113417-4113418|-/AT|frameshift_variant	REV__SDK1|p.G1830Rfs*24|1|0.09|ENSG00000146555|chr7:4210109-4210110|-/CAGACAATGGACTC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	601.78955078125	1	601.257631	600.250354	1.1344	0.00068209	2.7567	0.0016575	3.8911	0.0023396	601.2617775636656	153.7	0.23059	153.7	153.6	153.83	0					6	4	2	0	0	0	0.028476	1	18017	18017		8.8223	0	1	14527			42069	20022;29350;14817;1919;20530	34732	34756	45537	45537					-0.06576112255845601
PEAGSLWLLKL	11	Unmodified	_PEAGSLWLLKL_					0	0	0		ENSG00000174292|ENST00000688331|TNK1;nc|ENSG00000174292|Q13470|TNK1	ENSG00000174292|ENST00000688331|TNK1	ENSG00000174292|ENST00000688331|TNK1	MULTI-MSMS	OvCa99_classI_Rep5	1	613.8603515625	2	613.860806	1225.70706	1.4901	0.00091474	-2.508	-0.0015396	-1.0178	-0.00062481	613.8591175502872	130.73	1.0481	130.73	130.34	131.39	0					35	17	3	0	0	0	0.32052	1	15173	15173		49.536	6.6718	1	502550			42070	7454	34733	34757	45538	45538					0.10323420125382654
PEAHEQLR	8	Unmodified	_PEAHEQLR_					0	0	0			REV__ENST00000249601.8_1_10:49791013-49812893:-|nuORF	REV__ENST00000249601.8_1_10:49791013-49812893:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.2986755371094	2	490.251423	978.488293	-0.32541	-0.00015953	-1.496	-0.0007334	-1.8214	-0.00089293	490.2505807220649	43.194	0.25541	43.194	43.057	43.312	0					9	5	2	0	0	0	0.028476	1	2838	2838		35.201	13.241	1	81890	+		42071	23854	34734	34758	45539	45539					-0.001811713934330328
PEAKHPGDPQR	11	Unmodified	_PEAKHPGDPQR_					0	0	0		ENST00000559814.5_1_15:29346087-29400775:+|nuORF;nc|ENSG00000034053|Q99767-2|APBA2;ENSG00000034053|ENST00000683413|APBA2	ENST00000559814.5_1_15:29346087-29400775:+|nuORF	ENST00000559814.5_1_15:29346087-29400775:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	617.3178100585938	2	616.312543	1230.61053	2.1389	0.0013182	-2.403	-0.001481	-0.2641	-0.00016277	616.3107841511486	102.82	1.6457	102.82	102.5	104.15	0					111	38	5	0	0	0	0.50203	1	11510	11510		53.597	5.6373	1	13274000			42072	13724	34735	34759	45540	45540					0.0044524561810703744
PEAMDEPVLT	10	Unmodified	_PEAMDEPVLT_					0	0	0		nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-5|UNC80	nc|ENSG00000144406|Q8N2C7-7|UNC80	nc|ENSG00000144406|Q8N2C7-7|UNC80	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.3280029296875	2	551.260265	1100.50598	0.82892	0.00045695	3.2705	0.0018029	4.0994	0.0022598	551.2630189837333	84.52	0.75951	81.857	81.685	82.444	-2.6629					18	15	2	0	0	0	0.027056	1	7130	7130		9.7057	0	1	31178			42073	5149	34736	34760	45541	45541					-0.04025636973460678
PEANIDTAL	9	Unmodified	_PEANIDTAL_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-2|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-MSMS	OvCa99_classI_Rep5	1	472.24090576171875	2	472.24019	942.465826	0.95881	0.00045279	1.7948	0.00084757	2.7536	0.0013004	472.2409517995704	158.06	1.037	158.06	157.8	158.84	0					33	21	2	0	0	0	0.5811	1	18520	18520		34.173	0.65696	1	44549			42074	8262	34737	34761	45542	45542					-0.007708155817340412
PEARIFEETL	10	Unmodified	_PEARIFEETL_					0	0	0		ENST00000566842.5_1_16:29918195-29922616:-|nuORF;ENSG00000174943|ENST00000568000|KCTD13	ENST00000566842.5_1_16:29918195-29922616:-|nuORF	ENST00000566842.5_1_16:29918195-29922616:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	602.8161010742188	2	602.814053	1203.61355	2.4892	0.0015005	-0.24388	-0.00014701	2.2454	0.0013535	602.8138746670604	99.596	0.91698	99.596	99.405	100.32	0					57	21	5	0	0	0	0.35539	1	11010	11010		74.165	17.731	1	1515800			42075	13852	34738	34762	45543	45543					0.019890759522922963
PEARIYEETL	10	Unmodified	_PEARIYEETL_					0	0	0		ENSG00000109079|ENST00000226225|TNFAIP1;nc|ENSG00000109079|Q13829-2|TNFAIP1;nc|ENSG00000110906|Q9H3F6-2|KCTD10;ENSG00000110906|ENST00000228495|KCTD10;nc|ENSG00000110906|Q9H3F6-3|KCTD10	ENSG00000109079|ENST00000226225|TNFAIP1;nc|ENSG00000110906|Q9H3F6-2|KCTD10	ENSG00000109079|ENST00000226225|TNFAIP1	MULTI-MSMS	OvCa99_classI_Rep5	1	610.8128662109375	2	610.81151	1219.60847	1.8243	0.0011143	0.21323	0.00013025	2.0375	0.0012445	610.8115829828689	81.762	2.1744	81.762	81.455	83.629	0					132	51	5	0	0	0	0.18515	2	8478	8419;8478		96.665	41.161	1	16424000			42076	2695;2802	34739	34763	45544;45545	45545					0.007447720896834653
PEASVCPCTVD	11	Unmodified	_PEASVCPCTVD_					0	0	0			REV__ENST00000567020.6_2_16:2551598-2552264:+|nuORF	REV__ENST00000567020.6_2_16:2551598-2552264:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.7677001953125	2	560.736099	1119.45765	0.85428	0.00047902	4.3746	0.002453	5.2289	0.002932	560.7379046081351	57.982	0.29452	57.982	57.775	58.069	0					7	4	2	0	0	0	0.025861	1	4894	4894		12.207	0	1	116540	+		42077	27708	34740	34764	45546	45546					-0.09730453885003953
PEASVTQTPVC	11	Unmodified	_PEASVTQTPVC_					0	0	0		ENSG00000114270|ENST00000681320|COL7A1;nc|ENSG00000114270|Q02388-2|COL7A1	ENSG00000114270|ENST00000681320|COL7A1	ENSG00000114270|ENST00000681320|COL7A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.7988891601562	2	566.271164	1130.52777	1.2766	0.00072288	4.2073	0.0023824	5.4838	0.0031053	567.2767202528897	142.88	0.93312	142.88	142.18	143.12	0					31	18	3	0	0	0	0.026056	1	16618	16618		14.865	5.682	1	29189			42078	3016	34741	34765	45547	45547					-0.03226832224891041
PEAVRWEKLE	10	Unmodified	_PEAVRWEKLE_					0	0	0		ENSG00000165416|ENST00000310528|SUGT1;nc|ENSG00000165416|Q9Y2Z0|SUGT1	ENSG00000165416|ENST00000310528|SUGT1	ENSG00000165416|ENST00000310528|SUGT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	628.3050537109375	2	628.83532	1255.65609	0.37394	0.00023515	-3.2312	-0.0020319	-2.8573	-0.0017968	628.8333369712693	73.733	0.54285	73.733	73.44	73.983	0					28	12	3	0	0	0	0.027001	1	7238	7238		28.081	0	1	2065100			42079	6560	34742	34766	45548	45548					0.03848471080505078
PEAVRWEKLE	10	Unmodified	_PEAVRWEKLE_					0	0	0		ENSG00000165416|ENST00000310528|SUGT1;nc|ENSG00000165416|Q9Y2Z0|SUGT1	ENSG00000165416|ENST00000310528|SUGT1	ENSG00000165416|ENST00000310528|SUGT1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	628.83532	1255.65609	-0.15102	-9.4966E-05	-3.7404	-0.0023521	-3.8914	-0.002447	629.334471388089	76.067	0.462	73.695	73.518	73.98	-2.3715	-0.019032	-0.00054069	NaN	30.569	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12580			42080	6560	34742	34766							0.03848471080505078
PEAVVLWL	8	Unmodified	_PEAVVLWL_					0	0	0		ENST00000462848.5_1_2:219894910-219906234:-|nuORF	ENST00000462848.5_1_2:219894910-219906234:-|nuORF	ENST00000462848.5_1_2:219894910-219906234:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.2537841796875	2	463.770929	925.527304	-0.411	-0.00019061	-3.2564	-0.0015102	-3.6674	-0.0017008	463.7689447748062	58.992	1.4941	55.6	54.902	56.396	-3.392					51	29	2	0	0	0	0.028476	1	4003	4003		29.842	23.529	1	90088			42081	12213	34743	34767	45549	45549					0.06156160908221864
PEAVVLWL	8	Unmodified	_PEAVVLWL_					0	0	0		ENST00000462848.5_1_2:219894910-219906234:-|nuORF	ENST00000462848.5_1_2:219894910-219906234:-|nuORF	ENST00000462848.5_1_2:219894910-219906234:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	463.770929	925.527304	-0.54244	-0.00025157	-2.1546	-0.00099924	-2.697	-0.0012508	463.7692885245489	58.469	0.65242	55.689	55.285	55.937	-2.7801	0.044614	0.00080892	NaN	65.897	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11969			42082	12213	34743	34767							0.06156160908221864
PECLAGALAD	10	Unmodified	_PECLAGALAD_					0	0	0		ENSG00000179532|ENST00000254579|DNHD1;ENST00000533635.5_1_11:6587803-6591461:+|nuORF;ENST00000525883.5_1_11:6587352-6591461:+|nuORF;ENST00000529821.5_1_11:6587803-6593213:+|nuORF;ENST00000530197.5_1_11:6587352-6593213:+|nuORF	ENSG00000179532|ENST00000254579|DNHD1	ENSG00000179532|ENST00000254579|DNHD1	MULTI-SECPEP	OvCa9_classI_Rep3	3	479.2900390625	2	480.228768	958.442982	-0.58149	-0.00027925	2.7205	0.0013065	2.139	0.0010272	480.22964103155505	117.22	0.79305	116.18	115.94	116.74	-1.0324					24	15	2	0	0	0	0.026688	1	8839	8839		58.782	19.529	1	23563			42083	7829	34744	34768	45550	45550					-0.03790157970831842
PECLMKKTPVI	11	Unmodified	_PECLMKKTPVI_					0	0	0			REV__ENST00000541137.1_11:69182252-69182435:+|nuORF	REV__ENST00000541137.1_11:69182252-69182435:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	420.2363586425781	3	420.234777	1257.6825	-0.48401	-0.0002034	0.25748	0.0001082	-0.22653	-9.5197E-05	420.2348652404624	92.172	2.6968	90.147	89.584	92.281	-2.0241					147	54	4	0	0	0	0.54114	1	5802	5802		50.034	9.9753	1	1866100	+		42084	27363	34745	34769	45551	45551					0.06396700655977838
PECLVGSVPVQ	11	Unmodified	_PECLVGSVPVQ_					0	0	0		nc|ENSG00000171509|Q9HBX9-5|RXFP1;nc|ENSG00000171509|Q9HBX9-4|RXFP1;ENSG00000171509|ENST00000307765|RXFP1;nc|ENSG00000171509|Q9HBX9-3|RXFP1	nc|ENSG00000171509|Q9HBX9-5|RXFP1	nc|ENSG00000171509|Q9HBX9-5|RXFP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.8189086914062	2	564.291899	1126.56925	1.3597	0.00076729	-3.9669	-0.0022385	-2.6072	-0.0014712	564.2896132508707	142.64	1.7402	141.2	139.99	141.73	-1.4427					43	33	2	0	0	0	0.025528	1	13953	13953		28.081	6.1216	1	16626			42085	7209	34746	34770	45552	45552					0.011023485344594519
PECTHPLKV	9	Unmodified	_PECTHPLKV_					0	0	0		nc|ENSG00000140798|Q96J65|ABCC12;ENSG00000140798|ENST00000311303|ABCC12	nc|ENSG00000140798|Q96J65|ABCC12	nc|ENSG00000140798|Q96J65|ABCC12	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.2960815429688	2	512.268227	1022.5219	1.9696	0.001009	-2.733	-0.0014	-0.76343	-0.00039108	512.2664113986623	96.757	0.68206	96.757	96.543	97.225	0					25	15	2	0	0	0	0.027462	1	10658	10658		31.53	2.3803	1	806100			42086	4874	34747	34771	45553	45553					0.011541140541226014
PEDEEVKNL	9	Unmodified	_PEDEEVKNL_					0	0	0		ENST00000589144.5_1_19:19387459-19413207:-|nuORF;ENST00000588731.6_1_19:19387459-19414804:-|nuORF;ENSG00000105705|ENST00000247001|SUGP1;ENST00000535070.5_1_19:19412649-19416674:-|nuORF;SUGP1|p.Y308Pfs*28|1|0.06|ENSG00000105705|chr19:19297310-19297311|-/GG|frameshift_variant	ENST00000589144.5_1_19:19387459-19413207:-|nuORF	ENST00000589144.5_1_19:19387459-19413207:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.7991333007812	2	536.761486	1071.50842	-0.73476	-0.00039439	4.4863	0.0024081	3.7516	0.0020137	536.7644383825815	78.501	0.32658	75.685	75.554	75.88	-2.8165					8	6	2	0	0	0	0.027295	1	6341	6341		84.916	28.194	1	27019			42087	2493	34748	34772	45554	45554					-0.024474652441540456
PEDPEECPEE	10	Unmodified	_PEDPEECPEE_					0	0	0		ENSG00000172775|ENST00000309137|PSME3IP1	ENSG00000172775|ENST00000309137|PSME3IP1	ENSG00000172775|ENST00000309137|PSME3IP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.3272705078125	2	587.216251	1172.41795	-0.1507	-8.8494E-05	-3.0929	-0.0018162	-3.2436	-0.0019047	587.2143478307939	60.938	0.77004	60.938	60.688	61.458	0					42	17	4	0	0	0	0.02725	1	5318	5318		10.265	0.5596	1	1276600			42088	7318	34749	34773	45555	45555					-0.1613630235472101
PEDSIPDI	8	Unmodified	_PEDSIPDI_					0	0	0		ENST00000450133.5_1_7:32956958-32982633:-|nuORF	ENST00000450133.5_1_7:32956958-32982633:-|nuORF	ENST00000450133.5_1_7:32956958-32982633:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	443.21600341796875	2	443.21364	884.412728	1.3406	0.00059417	4.2702	0.0018926	5.6108	0.0024868	443.2154227972658	45.353	0.51791	45.353	45.023	45.54	0					22	11	3	0	0	0	0.56113	1	3128	3128		71.378	2.8932	1	619700			42089	12035	34750	34774	45556	45556					-0.03410193364368297
PEEEARLKIL	10	Unmodified	_PEEEARLKIL_					0	0	0		ENST00000519356.1_1_8:33331766-33367302:-|nuORF;ENSG00000129696|ENST00000431156|TTI2	ENST00000519356.1_1_8:33331766-33367302:-|nuORF	ENST00000519356.1_1_8:33331766-33367302:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	600.2754516601562	2	599.34552	1196.67649	1.1674	0.00069966	-3.3835	-0.0020279	-2.2161	-0.0013282	599.3415981819636	142.58	0.39778	142.58	142.39	142.78	0					9	7	2	0	0	0	0.026956	1	16662	16662		34.173	14.176	1	16455			42090	13086	34751	34775	45557	45557					0.0860164174032434
PEEIDLKND	9	Unmodified	_PEEIDLKND_					0	0	0		SORBS1|p.E565D|1|0.19|ENSG00000095637|chr10:95376015-95376015|T/A|missense_variant	SORBS1|p.E565D|1|0.19|ENSG00000095637|chr10:95376015-95376015|T/A|missense_variant	SORBS1|p.E565D|1|0.19|ENSG00000095637|chr10:95376015-95376015|T/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.834716796875	2	536.761486	1071.50842	1.5231	0.00081752	3.6378	0.0019526	5.1609	0.0027701	536.7635065377534	118.92	0.42727	118.92	118.77	119.19	0					13	8	2	0	0	0	0.027462	1	13639	13639		15.642	0.77694	1	49660			42091	32842	34752	34776	45558	45558					-0.024474652441540456
PEEKELRKTK	10	Unmodified	_PEEKELRKTK_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.D3716Mfs*6|1|0.06|ENSG00000157423|chr16:70868734-70868734|C/-|frameshift_variant	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	420.2355651855469	3	419.910227	1256.70885	-1.2345	-0.00051836	0.30339	0.0001274	-0.93106	-0.00039096	419.9105222632845	93.27	0.70807	90.763	90.463	91.171	-2.5072					21	14	2	0	0	0	0.027035	1	8090	8090		17.833	0	1	35686			42092	5891	34753	34777	45559	45559					0.09076429143306086
PEEKKSHARG	10	Unmodified	_PEEKKSHARG_					0	0	0			REV__nc|ENSG00000145734|A6H8Y1-7|BDP1	REV__nc|ENSG00000145734|A6H8Y1-7|BDP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	569.80126953125	2	569.801811	1137.58907	0.46515	0.00026505	-0.98522	-0.00056138	-0.52007	-0.00029634	569.8012084554681	38.552	1.4381	35.626	35.403	36.841	-2.9264					71	28	4	0	0	0	0.58067	1	1520	1520		44.377	5.571	1	787860	+		42093	19980	34754	34778	45560	45560					0.025778605893947315
PEELSGEMPRA	11	Unmodified	_PEELSGEMPRA_					0	0	0			REV__DCUN1D2-UPF3A|1|fusion	REV__DCUN1D2-UPF3A|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.911865234375	3	405.860656	1214.56014	0.85716	0.00034789	1.0781	0.00043754	1.9352	0.00078543	405.86103752080373	53.923	0.56295	53.923	53.651	54.214	0					23	13	2	0	0	0	0.02596	1	4333	4333		8.4073	0	1	654300	+		42094	16274	34755	34779	45561	45561					-0.038560448218731835
PEELTAVVAA	10	Unmodified	_PEELTAVVAA_					0	0	0			REV__nc|ENSG00000127603|O94854|MACF1	REV__nc|ENSG00000127603|O94854|MACF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.27154541015625	2	500.27149	998.528426	0.46694	0.0002336	0.80968	0.00040506	1.2766	0.00063866	500.2717841762572	34.705	1.3021	31.917	31.449	32.751	-2.7881					52	25	3	0	0	0	0.58282	1	1054	1054		44.117	0	1	73036	+		42095	28838	34756	34780	45562	45562					0.029103304864634083
PEEPDPKKI	9	Unmodified	_PEEPDPKKI_					0	0	0		WDR3|p.R930Gfs*9|1|0.09|ENSG00000065183|chr1:117959402-117959402|G/-|frameshift_variant;ENSG00000065183|ENST00000349139|WDR3	WDR3|p.R930Gfs*9|1|0.09|ENSG00000065183|chr1:117959402-117959402|G/-|frameshift_variant	WDR3|p.R930Gfs*9|1|0.09|ENSG00000065183|chr1:117959402-117959402|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	527.35595703125	2	526.784764	1051.55498	-1.6563	-0.00087252	0.19655	0.00010354	-1.4598	-0.00076899	526.7854386178328	84.447	1.0147	82.186	81.881	82.896	-2.261					24	20	2	0	0	0	0.027459	1	4949	4949		62.107	17.576	1	81135			42096	1317	34757	34781	45563	45563					0.03126019377805278
PEEPEELR	8	Unmodified	_PEEPEELR_					0	0	0			REV__nc|ENSG00000104131|O75822-2|EIF3J	REV__nc|ENSG00000104131|O75822-2|EIF3J	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.78515625	2	499.743096	997.47164	-0.39522	-0.00019751	-0.44399	-0.00022188	-0.8392	-0.00041939	499.7428592384456	118.47	0.89293	117.44	117.19	118.08	-1.0271					36	17	3	0	0	0	0.028476	1	8947	8947		21.96	7.8228	1	85824	+		42097	28778	34758	34782	45564	45564					-0.02719717070056049
PEEPPKEKV	9	Unmodified	_PEEPPKEKV_					0	0	0			REV__WIPI2|p.E278A|1|0.29|ENSG00000157954|chr7:5225915-5225915|A/C|missense_variant	REV__WIPI2|p.E278A|1|0.29|ENSG00000157954|chr7:5225915-5225915|A/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.3576049804688	2	526.784764	1051.55498	0.48918	0.00025769	-0.26835	-0.00014136	0.22083	0.00011633	526.7844480571002	84.839	0.68424	82.193	82.025	82.709	-2.6463					17	13	2	0	0	0	0.027461	1	7178	7178		49.442	18.938	1	53428	+		42098	20543	34759	34783	45565	45565					0.03126019377805278
PEERWFESG	9	Unmodified	_PEERWFESG_					0	0	0			REV__ENST00000587692.5_1_6:86388159-86388243:-|nuORF	REV__ENST00000587692.5_1_6:86388159-86388243:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.3192138671875	2	568.753995	1135.49344	1.1417	0.00064935	4.1195	0.002343	5.2612	0.0029923	568.7563172984278	83.398	0.55102	83.398	83.078	83.629	0					18	12	2	0	0	0	0.027462	1	8676	8676		24.519	4.5224	1	221240	+		42099	27880	34760	34784	45566	45566					-0.06888912321483076
PEESVGLRAE	10	Unmodified	_PEESVGLRAE_					0	0	0		ENSG00000143217|ENST00000368012|NECTIN4	ENSG00000143217|ENST00000368012|NECTIN4	ENSG00000143217|ENST00000368012|NECTIN4	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.796875	2	543.774928	1085.5353	0.14257	7.7528E-05	-3.4976	-0.0019019	-3.355	-0.0018244	543.7729203654382	67.247	1.0227	67.247	67.014	68.037	0					34	25	2	0	0	0	0.026714	1	6299	6299		42.864	19.822	1	1044000			42100	5023	34761	34785	45567	45567					-0.004043566329528403
PEESWVVFR	9	Unmodified	_PEESWVVFR_					0	0	0		ENSG00000104497|ENST00000345957|SNX16	ENSG00000104497|ENST00000345957|SNX16	ENSG00000104497|ENST00000345957|SNX16	MULTI-SECPEP	OvCa9_classI_Rep4_	4	574.8367919921875	2	574.790381	1147.56621	-1.8074	-0.0010389	0.23954	0.00013768	-1.5678	-0.00090118	575.2922331811934	119.74	0.78816	118.4	118.14	118.93	-1.3444					20	14	2	0	0	0	0.027462	1	11268	11268		35.618	0	1	27626			42101	2380	34762	34786	45568	45568					-0.001671585280519139
PEFECHPPLL	10	Unmodified	_PEFECHPPLL_					0	0	0		L1P1_dup3131|chr21:8366255-8369545:+|1.1341358509163533|0.0129397411743262|6.45|422.0|118|1|anti-sense	L1P1_dup3131|chr21:8366255-8369545:+|1.1341358509163533|0.0129397411743262|6.45|422.0|118|1|anti-sense	L1P1_dup3131|chr21:8366255-8369545:+|1.1341358509163533|0.0129397411743262|6.45|422.0|118|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	590.3038330078125	2	591.286617	1180.55868	-0.12022	-7.1084E-05	3.8626	0.0022839	3.7424	0.0022128	591.2891116841795	77.759	0.92079	74.942	74.44	75.361	-2.8165					25	18	2	0	0	0	0.026982	1	6205	6205		30.504	4.9296	1	29480			42102	14634	34763	34787	45569	45569					-0.02437634119996801
PEFECWPVL	9	Unmodified	_PEFECWPVL_					0	0	0		L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|290|2|anti-sense;L1PA11_dup257|chr1:220255199-220257096:+|1.2080698086480397|0.4810012897383803|1.33|429.0|118|3|anti-sense;L1P2_dup554|chr5:118974817-118975709:-|1.3792945865888482|0.1408758943517007|3.29|429.0|44|3|anti-sense	L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|290|2|anti-sense	L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|290|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.8180541992188	2	560.26261	1118.51067	1.8062	0.001012	-1.1274	-0.00063162	0.67888	0.00038035	560.2618520128676	138.72	0.47859	138.72	138.55	139.03	0					13	9	2	0	0	0	0.027456	1	16195	16195		30.504	0	1	52656			42103	14641	34764	34788	45570	45570					-0.04384708040015539
PEFIGIILL	9	Unmodified	_PEFIGIILL_					0	0	0		tr|A0A7D7A4X8|A0A7D7A4X8_9CLOTCa(2+)/H(+)antiporterOS=ClostridiumintestinaleOX=36845GN=caxPE=3SV=1	tr|A0A7D7A4X8|A0A7D7A4X8_9CLOTCa(2+)/H(+)antiporterOS=ClostridiumintestinaleOX=36845GN=caxPE=3SV=1	tr|A0A7D7A4X8|A0A7D7A4X8_9CLOTCa(2+)/H(+)antiporterOS=ClostridiumintestinaleOX=36845GN=caxPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.81268310546875	2	507.815336	1013.61612	-0.12107	-6.1481E-05	-4.4571	-0.0022634	-4.5782	-0.0023249	507.81301768077884	108.09	2.3576	107.86	106.9	109.26	-0.22498					116	47	4	0	0	0	0.32337	1	10134	10134		60.294	3.8602	1	960970			42104	36157	34765	34789	45571	45571					0.1098557614790252
PEFIGIILL	9	Unmodified	_PEFIGIILL_					0	0	0		tr|A0A7D7A4X8|A0A7D7A4X8_9CLOTCa(2+)/H(+)antiporterOS=ClostridiumintestinaleOX=36845GN=caxPE=3SV=1	tr|A0A7D7A4X8|A0A7D7A4X8_9CLOTCa(2+)/H(+)antiporterOS=ClostridiumintestinaleOX=36845GN=caxPE=3SV=1	tr|A0A7D7A4X8|A0A7D7A4X8_9CLOTCa(2+)/H(+)antiporterOS=ClostridiumintestinaleOX=36845GN=caxPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	507.81231689453125	2	507.815336	1013.61612	-0.47217	-0.00023978	-4.1397	-0.0021022	-4.6119	-0.002342	507.8132436809137	108.94	1.7138	107.74	107.32	109.03	-1.1978					102	32	5	0	0	0	0.42057	1	7835	7835		50.025	0.58299	1	1384800			42105	36157	34765	34789	45572	45572					0.1098557614790252
PEFIGIKII	9	Unmodified	_PEFIGIKII_					0	0	0		nc|ENSG00000093072|Q9NZK5-2|ADA2;ENSG00000093072|ENST00000399837|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.27783203125	2	515.320786	1028.62702	2.2	0.0011337	-4.032	-0.0020778	-1.832	-0.00094405	515.3188546889543	120.96	0.55336	120.96	120.78	121.34	0					16	12	2	0	0	0	0.027455	1	13949	13949		42.396	0	1	72769			42106	1907	34766	34790	45573	45573					0.11384978522164602
PEFTLPLYNK	10	Unmodified	_PEFTLPLYNK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	612.3163452148438	2	611.329339	1220.64412	2.9986	0.0018331	-0.80443	-0.00049177	2.1942	0.0013414	611.3286525194958	115.89	0.55301	115.89	115.68	116.23	0					18	11	2	0	0	0	0.026849	1	13287	13287		40.778	0	1	168130			42107	5793	34767	34791	45574	45574					0.042628543372984495
PEFYTDIGSI	10	Unmodified	_PEFYTDIGSI_					0	0	0			REV__tr|A0A7D7AF69|A0A7D7AF69_9CLOTSulfiteexporterTauE/SafEfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04860PE=4SV=1	REV__tr|A0A7D7AF69|A0A7D7AF69_9CLOTSulfiteexporterTauE/SafEfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04860PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	571.2741088867188	2	571.274229	1140.53391	0.84935	0.00048521	-1.419	-0.00081063	-0.56964	-0.00032542	571.2732198528677	142.39	1.5314	142.39	141.64	143.17	0					65	30	3	0	0	0	0.52321	1	16622	16622		51.335	3.3759	1	933830	+		42108	32711	34768	34792	45575	45575					-0.030739907217139262
PEGKQGKS	8	Unmodified	_PEGKQGKS_					0	0	0			REV__COL4A2|p.P164S|1|0.22|ENSG00000134871|chr13:110429897-110429897|C/T|missense_variant	REV__COL4A2|p.P164S|1|0.22|ENSG00000134871|chr13:110429897-110429897|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	415.7220458984375	2	415.721967	829.429381	1.7526	0.00072857	-1.9593	-0.00081452	-0.20674	-8.5945E-05	415.72103499680065	120.01	1.8058	118.98	118.63	120.43	-1.0271					63	35	3	0	0	0	0.75426	1	9137	9137		18.324	0	1	271890	+		42109	16164	34769	34793	45576	45576					0.007843523122460283
PEGLPDLRAL	10	Unmodified	_PEGLPDLRAL_					0	0	0		ENSG00000143994|ENST00000316470|ABHD1	ENSG00000143994|ENST00000316470|ABHD1	ENSG00000143994|ENST00000316470|ABHD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.7730102539062	2	540.806031	1079.59751	-1.025	-0.00055435	0.5507	0.00029782	-0.47434	-0.00025652	540.8059595599635	99.072	0.46709	96.747	96.536	97.003	-2.3253					11	8	2	0	0	0	0.026867	1	8831	8831		42.864	3.6114	1	7919.9			42110	5115	34770	34794	45577	45577					0.060894145060501614
PEGRLPDSEV	10	Unmodified	_PEGRLPDSEV_					0	0	0			REV__ENST00000466336.5_1_6:31940188-31948320:+|nuORF	REV__ENST00000466336.5_1_6:31940188-31948320:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.3244018554688	2	549.774928	1097.5353	-1.0747	-0.00059086	1.9175	0.0010542	0.84274	0.00046332	549.775619312729	44.252	0.40383	44.252	44.08	44.484	0					14	8	2	0	0	0	0.026849	1	2988	2988		19.104	0	1	257070	+		42111	23145	34771	34795	45578	45578					-0.009563566329461537
PEHLALGR	8	Unmodified	_PEHLALGR_					0	0	0		ENST00000393539.6_1_16:71495809-71495878:-|nuORF	ENST00000393539.6_1_16:71495809-71495878:-|nuORF	ENST00000393539.6_1_16:71495809-71495878:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	446.24224853515625	2	446.753601	891.49265	0.1454	6.496E-05	-1.0512	-0.00046964	-0.90583	-0.00040468	446.7529120908004	59.041	0.45509	55.649	55.3	55.755	-3.392					12	8	2	0	0	0	0.028476	1	3893	3893		10.866	4.5529	1	15073			42112	11248	34772	34796	45579	45579					0.042563378201293744
PEHLKIAVI	9	Unmodified	_PEHLKIAVI_					0	0	0		tr|A0A553SK56|A0A553SK56_NIACIUroporphyrinogen-IIIsynthaseOS=NialliacirculansOX=1397GN=CEQ21_18250PE=3SV=1	tr|A0A553SK56|A0A553SK56_NIACIUroporphyrinogen-IIIsynthaseOS=NialliacirculansOX=1397GN=CEQ21_18250PE=3SV=1	tr|A0A553SK56|A0A553SK56_NIACIUroporphyrinogen-IIIsynthaseOS=NialliacirculansOX=1397GN=CEQ21_18250PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.3140869140625	2	510.316035	1018.61752	0.19995	0.00010204	-0.62715	-0.00032004	-0.4272	-0.00021801	510.3156392615771	115.2	1.3493	113.8	113.46	114.81	-1.3977					55	26	3	0	0	0	0.42676	1	10710	10710		49.442	7.0454	1	99914			42113	33578	34773	34797	45580	45580					0.10895210236662933
PEHLKIAVI	9	Unmodified	_PEHLKIAVI_					0	0	0		tr|A0A553SK56|A0A553SK56_NIACIUroporphyrinogen-IIIsynthaseOS=NialliacirculansOX=1397GN=CEQ21_18250PE=3SV=1	tr|A0A553SK56|A0A553SK56_NIACIUroporphyrinogen-IIIsynthaseOS=NialliacirculansOX=1397GN=CEQ21_18250PE=3SV=1	tr|A0A553SK56|A0A553SK56_NIACIUroporphyrinogen-IIIsynthaseOS=NialliacirculansOX=1397GN=CEQ21_18250PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	510.316035	1018.61752	0.11991	6.1191E-05	-0.2723	-0.00013896	-0.15239	-7.7766E-05	510.3158794358179	113.91	1.4807	113.79	113.47	114.95	-0.11777	-0.0065887	1.7254E-05	NaN	49.442	52	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79842			42114	33578	34773	34797							0.10895210236662933
PEHLKIAVI	9	Unmodified	_PEHLKIAVI_					0	0	0		tr|A0A553SK56|A0A553SK56_NIACIUroporphyrinogen-IIIsynthaseOS=NialliacirculansOX=1397GN=CEQ21_18250PE=3SV=1	tr|A0A553SK56|A0A553SK56_NIACIUroporphyrinogen-IIIsynthaseOS=NialliacirculansOX=1397GN=CEQ21_18250PE=3SV=1	tr|A0A553SK56|A0A553SK56_NIACIUroporphyrinogen-IIIsynthaseOS=NialliacirculansOX=1397GN=CEQ21_18250PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	510.316035	1018.61752	-0.2847	-0.00014529	0.14693	7.4978E-05	-0.13777	-7.0307E-05	510.3159470088904	114.86	1.1347	113.81	113.55	114.69	-1.055	0.0072465	0.00044512	NaN	49.442	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91620			42115	33578	34773	34797							0.10895210236662933
PEHTEFDLD	9	Unmodified	_PEHTEFDLD_					0	0	0			REV__nc|ENSG00000122882|O95905-2|ECD	REV__nc|ENSG00000122882|O95905-2|ECD	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.2726440429688	2	551.738011	1101.46147	1.3303	0.00073395	-1.169	-0.00064498	0.16125	8.897E-05	551.7372777993586	138.45	0.38519	138.45	138.26	138.64	0					14	7	2	0	0	0	0.027462	1	16163	16163		34.173	14.176	1	62003	+		42116	18616	34774	34798	45581	45581					-0.08520324795290435
PEIAQAVEEM	10	Unmodified	_PEIAQAVEEM_					0	0	0		ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-2|DDX1	ENSG00000079785|ENST00000233084|DDX1	ENSG00000079785|ENST00000233084|DDX1	MULTI-MSMS	OvCa99_classI_Rep5	1	558.7693481445312	2	558.765714	1115.51688	2.0084	0.0011222	-0.29733	-0.00016614	1.711	0.00095607	558.7653981921969	106.97	0.67982	106.97	106.72	107.4	0					31	15	3	0	0	0	0.15355	1	12049	12049		101.46	21.747	1	1103700			42117	1620	34775	34799	45582	45582					-0.036262345991644906
PEIAQAVEEMD	11	Unmodified	_PEIAQAVEEMD_					0	0	0		ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-2|DDX1	ENSG00000079785|ENST00000233084|DDX1	ENSG00000079785|ENST00000233084|DDX1	MULTI-MSMS	OvCa99_classI_Rep5	1	616.2813720703125	2	616.279186	1230.54382	0.29266	0.00018036	0.74055	0.00045639	1.0332	0.00063674	616.2795225998939	105.46	1.8901	105.46	104.96	106.85	0					97	42	4	0	0	0	0.059541	2	11854	11830;11854		109.83	60.388	1	10904000			42118	1620	34776	34800	45583;45584	45584					-0.06223170778639542
PEIFGDALMV	10	Unmodified	_PEIFGDALMV_					0	0	0		nc|ENSG00000198604|Q9NRL2-2|BAZ1A;ENSG00000198604|ENST00000360310|BAZ1A	nc|ENSG00000198604|Q9NRL2-2|BAZ1A	nc|ENSG00000198604|Q9NRL2-2|BAZ1A	MULTI-MSMS	OvCa9_classI_Rep2	2	546.2774658203125	2	546.275718	1090.53688	0.82759	0.00045209	1.7715	0.00096773	2.5991	0.0014198	546.2764511459147	126.98	1.5804	126.75	126.39	127.97	-0.2359					56	31	3	0	0	0	0.43592	1	12409	12409		63.306	1.1989	1	114850			42119	8834	34778	34801	45585	45585					-0.004764388685543963
PEIFGDALMV	10	Unmodified	_PEIFGDALMV_					0	0	0		nc|ENSG00000198604|Q9NRL2-2|BAZ1A;ENSG00000198604|ENST00000360310|BAZ1A	nc|ENSG00000198604|Q9NRL2-2|BAZ1A	nc|ENSG00000198604|Q9NRL2-2|BAZ1A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	546.275718	1090.53688	0.66534	0.00036346	2.095	0.0011444	2.7603	0.0015079	546.2766557671328	127.61	1.5599	126.52	126.25	127.81	-1.0933	-0.062529	-0.00036393	NaN	63.306	50	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85212			42120	8834	34778	34801							-0.004764388685543963
PEIFGDALMV	10	Unmodified	_PEIFGDALMV_					0	0	0		nc|ENSG00000198604|Q9NRL2-2|BAZ1A;ENSG00000198604|ENST00000360310|BAZ1A	nc|ENSG00000198604|Q9NRL2-2|BAZ1A	nc|ENSG00000198604|Q9NRL2-2|BAZ1A	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	546.275718	1090.53688	-0.69095	-0.00037745	3.2295	0.0017642	2.5385	0.0013867	546.2773590007274	127.91	1.6271	126.47	126.19	127.81	-1.4357	-0.10536	0.00087558	NaN	63.306	62	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	153590			42121	8834	34778	34801							-0.004764388685543963
PEIIEEIQLD	10	Unmodified	_PEIIEEIQLD_					0	0	0		tr|A0A553SS86|A0A553SS86_NIACIAlanyl-tRNAeditingproteinOS=NialliacirculansOX=1397GN=CEQ21_02600PE=4SV=1	tr|A0A553SS86|A0A553SS86_NIACIAlanyl-tRNAeditingproteinOS=NialliacirculansOX=1397GN=CEQ21_02600PE=4SV=1	tr|A0A553SS86|A0A553SS86_NIACIAlanyl-tRNAeditingproteinOS=NialliacirculansOX=1397GN=CEQ21_02600PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	400.2384033203125	3	400.211571	1197.61288	1.2788	0.00051178	-1.5574	-0.00062331	-0.27866	-0.00011152	400.210829895392	53.608	0.71567	50.383	50.132	50.848	-3.2244					25	13	2	0	0	0	0.027001	1	3293	3293		11.097	0	1	36990			42122	34343	34779	34802	45586	45586					0.021982365125722936
PEIKVRLK	8	Unmodified	_PEIKVRLK_					0	0	0			REV__SERPINB1-RNPEP|1|fusion	REV__SERPINB1-RNPEP|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.7601318359375	2	491.824027	981.633501	-1.1807	-0.00058071	0.37601	0.00018493	-0.80472	-0.00039578	491.82406484879107	64.249	0.61409	64.249	63.974	64.588	0					27	14	3	0	0	0	0.028476	1	5876	5876		40.573	0	1	828170	+		42123	29353	34780	34803	45587	45587					0.1419491647355926
PEIMLHCQV	9	Unmodified	_PEIMLHCQV_					0	0	0		ENST00000462467.5_1_21:38634040-38634136:-|nuORF	ENST00000462467.5_1_21:38634040-38634136:-|nuORF	ENST00000462467.5_1_21:38634040-38634136:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	535.260986328125	2	535.262087	1068.50962	-0.42594	-0.00022799	-1.7883	-0.00095721	-2.2142	-0.0011852	535.2611327126184	35.269	0.97709	35.269	35.052	36.029	0					44	20	4	0	0	0	0.55588	1	1758	1758		37.159	2.9866	1	2286100			42124	12205	34781	34804	45588	45588					-0.021892456805744587
PEIQKLIARH	10	Unmodified	_PEIQKLIARH_					0	0	0		nc|ENSG00000141577|Q9UPN4-3|CEP131;ENSG00000141577|ENST00000450824|CEP131;nc|ENSG00000141577|Q9UPN4|CEP131	nc|ENSG00000141577|Q9UPN4-3|CEP131	nc|ENSG00000141577|Q9UPN4-3|CEP131	MULTI-SECPEP	OvCa9_classI_Rep3	3	402.2594299316406	3	402.24354	1203.70879	2.4726	0.00099458	2.2647	0.00091098	4.7373	0.0019056	402.24424617038284	63.534	0.33682	60.5	60.366	60.703	-3.0339					9	6	2	0	0	0	0.027165	1	2407	2407		14.694	0	1	4221.1			42125	4929	34782	34805	45589	45589					0.11508473933986352
PEIRKYVK	8	Unmodified	_PEIRKYVK_					0	0	0			REV__tr|A0A553SUD9|A0A553SUD9_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_06845PE=4SV=1	REV__tr|A0A553SUD9|A0A553SUD9_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_06845PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.25146484375	2	516.813659	1031.61277	2.1345	0.0011031	2.8883	0.0014927	5.0228	0.0025959	516.8153126777685	76.068	0.32516	76.068	75.874	76.199	0					10	7	2	0	0	0	0.028476	1	7600	7600		30.504	11.144	1	159920	+		42126	31067	34783	34806	45590	45590					0.09822326093899392
PEIVNFVQ	8	Unmodified	_PEIVNFVQ_					0	0	0		ENST00000526890.5_1_11:3050224-3063461:-|nuORF;nc|ENSG00000110619|P49589-2|CARS1;nc|ENSG00000110619|P49589|CARS1;ENST00000531387.5_1_11:3022346-3069017:-|nuORF;ENSG00000110619|ENST00000380525|CARS1	ENST00000526890.5_1_11:3050224-3063461:-|nuORF	ENST00000526890.5_1_11:3050224-3063461:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.2730407714844	2	473.255643	944.496732	2.71	0.0012825	1.801	0.00085235	4.511	0.0021349	473.2566457814331	75.341	0.43597	75.341	75.087	75.523	0					14	10	2	0	0	0	0.028476	1	7486	7486		20.482	0	1	174190			42127	2783	34784	34807	45591	45591					0.022263825232016643
PEKAFEHLT	9	Unmodified	_PEKAFEHLT_					0	0	0		ENSG00000174348|ENST00000312553|PODN;nc|ENSG00000174348|Q7Z5L7-2|PODN;nc|ENSG00000174348|Q7Z5L7-3|PODN	ENSG00000174348|ENST00000312553|PODN	ENSG00000174348|ENST00000312553|PODN	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2750244140625	2	536.277106	1070.53966	1.86	0.00099747	2.3964	0.0012851	4.2564	0.0022826	536.2786450691295	136.22	0.70651	136.22	135.78	136.49	0					26	14	3	0	0	0	0.027462	1	15889	15889		32.812	0	1	186260			42128	7459	34785	34808	45592	45592					0.007211525806042118
PEKALILGF	9	Unmodified	_PEKALILGF_					0	0	0		nc|ENSG00000185049|Q9H3P2-7|NELFA;ENST00000467661.5_1_4:1985048-1988196:-|nuORF;NELFA|p.T512Sfs*11|1|0.24|ENSG00000185049|chr4:1983365-1983371|TGGCCCG/-|frameshift_variant;ENSG00000185049|ENST00000382882|NELFA;ENST00000463820.5_1_4:1985048-1993691:-|nuORF	nc|ENSG00000185049|Q9H3P2-7|NELFA	nc|ENSG00000185049|Q9H3P2-7|NELFA	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.77825927734375	2	494.29731	986.580068	1.2688	0.00062718	0.88964	0.00043975	2.1585	0.0010669	494.29754256948564	138.52	0.57443	138.52	138.31	138.88	0					20	11	3	0	0	0	0.027462	1	16139	16139		12.959	0	1	104990			42129	8220	34786	34809	45593	45593					0.08624118971056305
PEKEKTKL	8	Unmodified	_PEKEKTKL_					0	0	0		ENST00000567550.1_1_16:15528510-15675189:+|nuORF;nc|ENSG00000166780|Q96MC5-2|BMERB1;ENSG00000166780|ENST00000300006|BMERB1	ENST00000567550.1_1_16:15528510-15675189:+|nuORF	ENST00000567550.1_1_16:15528510-15675189:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	486.79083251953125	2	486.78985	971.565146	2.0711	0.0010082	-0.029526	-1.4373E-05	2.0416	0.00099383	486.7897005897245	77.037	0.49869	77.037	76.882	77.381	0					15	11	2	0	0	0	0.37357	1	7752	7752		93.195	8.0346	1	1580400			42130	6709	34787	34810	45594	45594					0.07822627103041668
PEKEKTKL	8	Unmodified	_PEKEKTKL_					0	0	0		ENST00000567550.1_1_16:15528510-15675189:+|nuORF;nc|ENSG00000166780|Q96MC5-2|BMERB1;ENSG00000166780|ENST00000300006|BMERB1	ENST00000567550.1_1_16:15528510-15675189:+|nuORF	ENST00000567550.1_1_16:15528510-15675189:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	486.78985	971.565146	-0.29427	-0.00014325	-0.018673	-9.0897E-06	-0.31294	-0.00015234	486.78960394546823	79.389	0.95681	77.049	76.802	77.759	-2.3399	0.0061251	4.2108E-06	NaN	93.195	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112330			42131	6709	34787	34810							0.07822627103041668
PEKELNHLS	9	Unmodified	_PEKELNHLS_					0	0	0		ENST00000466692.1_1_4:1575879-1576248:-|nuORF	ENST00000466692.1_1_4:1575879-1576248:-|nuORF	ENST00000466692.1_1_4:1575879-1576248:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.3262939453125	2	533.780013	1065.54547	-0.27102	-0.00014467	-0.30055	-0.00016043	-0.57157	-0.00030509	533.7797728401755	42.808	0.89759	42.808	42.624	43.521	0					32	20	3	0	0	0	0.027462	1	2767	2767		41.427	0	1	364350			42132	12296	34788	34811	45595	45595					0.015322510922715082
PEKGRVTL	8	Unmodified	_PEKGRVTL_					0	0	0			REV__nc|ENSG00000257923|P39880-6|CUX1	REV__nc|ENSG00000257923|P39880-6|CUX1	MULTI-MSMS	OvCa9_classI_Rep2	2	450.26690673828125	2	450.269084	898.523616	3.0447	0.0013709	-2.8004	-0.001261	0.24425	0.00010998	450.2677429361468	71.284	1.9614	68.777	67.576	69.537	-2.5071					97	37	4	0	0	0	0.60899	1	5724	5724		62.107	7.3427	1	619310	+		42133	23549	34789	34812	45596	45596					0.07029491134380805
PEKIERIEL	9	Unmodified	_PEKIERIEL_					0	0	0		nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	MULTI-MSMS	OvCa99_classI_Rep5	1	563.8290405273438	2	563.826963	1125.63937	-0.043216	-2.4366E-05	-0.34727	-0.0001958	-0.39048	-0.00022016	563.8266748103352	68.415	1.0309	68.415	68.114	69.145	0					71	24	5	0	0	0	0.14998	1	6448	6448		84.916	0	1	11055000			42134	1589	34790	34813	45597	45597					0.08157970194565678
PEKKAPPPPK	10	Unmodified	_PEKKAPPPPK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.P12974Lfs*4|1|0.05|ENSG00000155657|chr2:178631204-178631205|-/GTACA|frameshift_variant;TTN|p.E11597Rfs*5|1|0.5|ENSG00000155657|chr2:178651954-178651954|A/-|frameshift_variant;TTN|p.R11195Efs*5|1|0.15|ENSG00000155657|chr2:178674318-178674318|A/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2761840820312	2	544.826766	1087.63898	1.5925	0.00086765	-0.14093	-7.6784E-05	1.4516	0.00079087	544.8269190323651	127.51	0.63953	127.51	127.4	128.04	0					17	13	2	0	0	0	0.026714	1	14783	14783		51.193	7.0759	1	38568			42135	5793;36288	34791	34814	45598	45598					0.09866595265361866
PEKLATKF	8	Unmodified	_PEKLATKF_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	OvCa99_classI_Rep5	1	467.2752380371094	2	467.273835	932.533118	0.6161	0.00028789	-0.43504	-0.00020328	0.18106	8.4603E-05	467.273559293132	72.207	0.96901	72.207	71.835	72.804	0					41	23	3	0	0	0	0.34594	1	7020	7020		98.582	21.808	1	1962500			42136	4517	34792	34815	45599	45599					0.06415259419895847
PEKLGQAL	8	Unmodified	_PEKLGQAL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OvCa99_classI_Rep5	1	428.2515563964844	2	428.25036	854.486168	-0.11898	-5.0953E-05	1.455	0.0006231	1.336	0.00057215	428.2509220033033	67.656	0.8619	67.656	67.371	68.233	0					43	21	3	0	0	0	0.32444	1	6338	6338		102.77	5.3007	1	1954400			42137	3119	34793	34816	45600	45600					0.053103998687561216
PEKLGQAL	8	Unmodified	_PEKLGQAL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	428.25036	854.486168	-0.38619	-0.00016539	-4.1544	-0.0017791	-4.5406	-0.0019445	428.25082096076284	70.055	0.70078	67.485	67.165	67.866	-2.5707	-0.063617	-0.0030015	NaN	102.77	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17251			42138	3119	34793	34816							0.053103998687561216
PEKLGQAL	8	Unmodified	_PEKLGQAL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;ENST00000470710.1_1_2:242194755-242195742:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	428.25036	854.486168	-0.23116	-9.8993E-05	-4.7162	-0.0020197	-4.9473	-0.0021187	428.2505106610507	70.96	1.1637	67.504	67.106	68.27	-3.4563	-0.0443	-0.0034826	NaN	102.77	51	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76745			42139	3119	34793	34816							0.053103998687561216
PEKLLLWVI	9	Unmodified	_PEKLLLWVI_					0	0	0			REV__ENSG00000164879|ENST00000285381|CA3	REV__ENSG00000164879|ENST00000285381|CA3	MULTI-SECPEP	OvCa9_classI_Rep2	2	556.7903442382812	2	555.84971	1109.68487	-0.53086	-0.00029508	-3.1689	-0.0017614	-3.6998	-0.0020565	555.8478348442552	67.861	0.83694	65.2	65.041	65.878	-2.661					31	16	3	0	0	0	0.027462	1	5314	5314		30.504	6.9809	1	66683	+		42140	21029	34794	34817	45601	45601					0.13441240447605196
PEKLNELGLLI	11	Unmodified	_PEKLNELGLLI_					0	0	0		nc|ENSG00000059377|P24557-3|TBXAS1	nc|ENSG00000059377|P24557-3|TBXAS1	nc|ENSG00000059377|P24557-3|TBXAS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8697509765625	2	619.871371	1237.72819	-3.1194	-0.0019336	-0.12263	-7.6013E-05	-3.242	-0.0020096	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.70865	1	14910	14910		26.693	1.1189	1	806750			42141	14879	34795	34818	45602	45602					0.11883385434225602
PEKPCVDPL	9	Carbamidomethyl (C)	_PEKPC(Carbamidomethyl (C))VDPL_	PEKPC(1)VDPL		PEKPC(51)VDPL		0	1	0			REV__nc|ENSG00000143952|Q9P1Q0-4|VPS54	REV__nc|ENSG00000143952|Q9P1Q0-4|VPS54	MULTI-MSMS	OvCa99_classI_Rep5	1	527.7660522460938	2	527.765517	1053.51648	2.4126	0.0012733	-0.17798	-9.3933E-05	2.2346	0.0011793	527.7653743143986	90.343	1.9456	90.343	89.933	91.879	0					89	47	4	0	0	0	0.40667	1	9667	9667		51.335	8.861	1	17833000	+		42142	19878	34796	34819	45603	45603	218				-0.008136095283816758
PEKPITFKL	9	Unmodified	_PEKPITFKL_					0	0	0		tr|A0A7D7A4C2|A0A7D7A4C2_9CLOTPTSsugartransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_02415PE=4SV=1	tr|A0A7D7A4C2|A0A7D7A4C2_9CLOTPTSsugartransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_02415PE=4SV=1	tr|A0A7D7A4C2|A0A7D7A4C2_9CLOTPTSsugartransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_02415PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.322021484375	2	536.823692	1071.63283	-2.4681	-0.0013249	2.4991	0.0013416	0.031042	1.6664E-05	536.824903255904	119.36	0.78696	119.19	118.86	119.64	-0.17137					23	15	3	0	0	0	0.027462	1	11502	11502		51.335	17.82	1	90890			42143	36140	34797	34820	45604	45604					0.09988077033835907
PEKPITPLVVE	11	Unmodified	_PEKPITPLVVE_					0	0	0			REV__ENSG00000119636|ENST00000394009|BBOF1	REV__ENSG00000119636|ENST00000394009|BBOF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3546142578125	2	611.358096	1220.70164	-2.725	-0.001666	-0.73961	-0.00045217	-3.4646	-0.0021181	611.3575283211214	150.83	4.6872	149.39	148.02	152.71	-1.4344					404	109	6	0	0	0	0.70142	1	14965	14965		29.17	0.020503	1	435030	+		42144	18454	34798	34821	45605	45605					0.10011696542892423
PEKRFPKP	8	Unmodified	_PEKRFPKP_					0	0	0		ENSG00000122779|ENST00000343526|TRIM24;nc|ENSG00000122779|O15164-2|TRIM24	ENSG00000122779|ENST00000343526|TRIM24	ENSG00000122779|ENST00000343526|TRIM24	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.790771484375	2	499.792727	997.5709	-1.1346	-0.00056708	-2.9542	-0.0014765	-4.0889	-0.0020436	499.7911515864605	48.635	2.0156	45.528	44.838	46.854	-3.1077					66	38	4	0	0	0	0.73288	1	2716	2716		35.201	1.6851	1	452430			42145	3558	34799	34822	45606	45606					0.07201770405367824
PEKSKCKPL	9	Unmodified	_PEKSKCKPL_					0	0	0		ENST00000495067.1_1_7:87505864-87507564:+|nuORF;ENST00000486925.1_1_7:87505915-87514494:+|nuORF;nc|ENSG00000006634|Q9UBU7-2|DBF4;ENSG00000006634|ENST00000265728|DBF4	ENST00000495067.1_1_7:87505864-87507564:+|nuORF;ENSG00000006634|ENST00000265728|DBF4	ENST00000495067.1_1_7:87505864-87507564:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.7459716796875	2	515.291702	1028.56885	-0.19346	-9.9687E-05	-0.80104	-0.00041277	-0.99449	-0.00051245	515.7925750749158	95.692	0.49115	93.864	93.632	94.123	-1.8286					14	9	2	0	0	0	0.027453	1	6277	6277		54.776	3.4409	1	18722			42146	12631;884	34800	34823	45607	45607					0.05570973605267682
PEKSKNLIL	9	Unmodified	_PEKSKNLIL_					0	0	0			REV__tr|A0A553STR7|A0A553STR7_NIACICytoplasmicproteinOS=NialliacirculansOX=1397GN=CEQ21_05630PE=4SV=1	REV__tr|A0A553STR7|A0A553STR7_NIACICytoplasmicproteinOS=NialliacirculansOX=1397GN=CEQ21_05630PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	521.3201904296875	2	521.318774	1040.623	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.27	1	105.27	104.77	105.77	0								0	0	0	0.043559	1	11820	11820		79.451	2.6769	1		+		42147	31002	34801	34824	45608	45608					0.10430889028475576
PEKTRIMTH	9	Unmodified	_PEKTRIMTH_					0	0	0		ENST00000468336.5_1_20:42143184-42144199:+|nuORF	ENST00000468336.5_1_20:42143184-42144199:+|nuORF	ENST00000468336.5_1_20:42143184-42144199:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	556.7945556640625	2	556.797683	1111.58081	0.93665	0.00052153	-4.4247	-0.0024637	-3.4881	-0.0019422	556.7950444095158	115.23	1.0985	113.84	113.51	114.61	-1.3977					53	21	3	0	0	0	0.37135	1	10732	10732		54.776	8.8041	1	224230			42148	12327	34802	34825	45609	45609					0.02948590348455582
PEKTRIMTH	9	Unmodified	_PEKTRIMTH_					0	0	0		ENST00000468336.5_1_20:42143184-42144199:+|nuORF	ENST00000468336.5_1_20:42143184-42144199:+|nuORF	ENST00000468336.5_1_20:42143184-42144199:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	556.797683	1111.58081	0.75171	0.00041855	-4.2645	-0.0023745	-3.5128	-0.0019559	556.7950570984923	113.91	1.5297	113.79	113.57	115.1	-0.11777	-0.033447	-0.00041125	NaN	54.776	68	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193900			42149	12327	34802	34825							0.02948590348455582
PEKWFSPPL	9	Unmodified	_PEKWFSPPL_					0	0	0			REV__ENSG00000284395|ENST00000640283|PERCC1	REV__ENSG00000284395|ENST00000640283|PERCC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.3280029296875	2	550.792392	1099.57023	1.0525	0.00057973	4.2819	0.0023584	5.3344	0.0029382	551.2963261940446	84.849	0.24139	82.203	82.12	82.361	-2.6463					6	4	2	0	0	0	0.027462	1	7130	7130		27.882	18.699	1	12781	+		42150	23668	34803	34826	45610	45610					0.024429309656625264
PELADIMTKE	10	Unmodified	_PELADIMTKE_					0	0	0			REV__tr|A0A7D6VTK1|A0A7D6VTK1_9CLOTDihydroxyacetonekinasesubunitLOS=ClostridiumintestinaleOX=36845GN=dhaLPE=4SV=1	REV__tr|A0A7D6VTK1|A0A7D6VTK1_9CLOTDihydroxyacetonekinasesubunitLOS=ClostridiumintestinaleOX=36845GN=dhaLPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.3150024414062	2	573.789189	1145.56383	0.49357	0.00028321	-3.1699	-0.0018188	-2.6763	-0.0015356	573.7871812069427	114.92	1.1477	114.92	114.15	115.3	0					59	24	3	0	0	0	0.02663	1	13136	13136		51.193	8.3284	1	1023900	+		42151	31609	34804	34827	45611	45611					-0.003133750480174058
PELHGDNKET	10	Unmodified	_PELHGDNKET_					0	0	0			REV__nc|ENSG00000167733|Q7Z5J1|HSD11B1L	REV__nc|ENSG00000167733|Q7Z5J1|HSD11B1L	MULTI-SECPEP	OvCa9_classI_Rep2	2	570.2930297851562	2	570.27001	1138.52547	-0.28677	-0.00016354	1.1051	0.00063023	0.81838	0.0004667	570.2705087562894	44.287	0.20031	41.578	41.452	41.653	-2.7097					5	3	2	0	0	0	0.027028	1	2518	2518		12.812	0	1	7741.7	+		42152	28985	34805	34828	45612	45612					-0.03825544638334577
PELIKVGYI	9	Unmodified	_PELIKVGYI_					0	0	0			REV__nc|ENSG00000144366|Q9UBP9-2|GULP1	REV__nc|ENSG00000144366|Q9UBP9-2|GULP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.28369140625	2	516.310418	1030.60628	1.838	0.000949	2.7602	0.0014251	4.5982	0.0023741	516.8137906341905	116.47	0.45199	116.47	116.23	116.68	0					11	9	2	0	0	0	0.027417	1	13310	13310		65.803	0	1	104320	+		42153	19906	34806	34829	45613	45613					0.09220388142512093
PELKKVFGNE	10	Unmodified	_PELKKVFGNE_					0	0	0			REV__nc|ENSG00000180953|Q9HBF5|ST20	REV__nc|ENSG00000180953|Q9HBF5|ST20	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.8845825195312	2	580.819138	1159.62372	-0.77042	-0.00044748	-2.6445	-0.001536	-3.4149	-0.0019835	580.8174181281094	41.308	0.62429	41.308	40.926	41.55	0					16	13	2	0	0	0	0.026734	1	2554	2554		39.253	0	1	182760	+		42154	29034	34807	34830	45614	45614					0.05029683677548746
PELKRVLI	8	Unmodified	_PELKRVLI_					0	0	0			REV__ENSG00000106128|ENST00000326139|GHRHR	REV__ENSG00000106128|ENST00000326139|GHRHR	MULTI-MSMS	OvCa9_classI_Rep3	3	484.3173828125	2	484.318577	966.622602	-0.71351	-0.00034557	0.30616	0.00014828	-0.40734	-0.00019728	484.318588992095	115.68	1.0854	114.64	114.35	115.44	-1.0414					53	21	3	0	0	0	0.64026	1	8599	8599		55.504	11.878	1	180240	+		42155	17780	34808	34831	45615	45615					0.13795514099274442
PELKVALQHTK	11	Unmodified	_PELKVALQHTK_					0	0	0			REV__ENSG00000097096|ENST00000341460|SYDE2	REV__ENSG00000097096|ENST00000341460|SYDE2	MULTI-MSMS	OvCa9_classI_Rep4_	4	421.91668701171875	3	421.918834	1262.73467	-0.4925	-0.00020779	-4.2247	-0.0017825	-4.7172	-0.0019903	421.9169855348621	20.547	1.6698	19.208	18.803	20.473	-1.3386					99	33	4	0	0	0	0.68391	2	86	86;96		35.178	3.544	1	609660	+		42156	17312	34809	34832	45616;45617	45616					0.113813233855808
PELKVNHLI	9	Unmodified	_PELKVNHLI_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8181762695312	2	531.818941	1061.62333	0.089047	4.7357E-05	-3.7428	-0.0019905	-3.6538	-0.0019431	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.53957	1	13577	13577		38.806	1.647	1	263230	+		42157	16672	34810	34833	45618	45618					0.09498308748334239
PELLAHVVNL	10	Unmodified	_PELLAHVVNL_					0	0	0		ENSG00000186994|ENST00000330915|KANK3;nc|ENSG00000186994|Q6NY19-1|KANK3	ENSG00000186994|ENST00000330915|KANK3	ENSG00000186994|ENST00000330915|KANK3	MULTI-MSMS	OvCa9_classI_Rep3	3	552.82373046875	2	552.824224	1103.63389	0.65495	0.00036207	-0.63812	-0.00035277	0.016829	9.3034E-06	552.8236979946989	127.27	1.4282	126.2	125.91	127.34	-1.0715					71	27	4	0	0	0	0.55359	1	9980	9980		47.657	1.6851	1	197430			42158	8381	34811	34834	45619	45619					0.08622291402775772
PELLAHVVNL	10	Unmodified	_PELLAHVVNL_					0	0	0		ENSG00000186994|ENST00000330915|KANK3;nc|ENSG00000186994|Q6NY19-1|KANK3	ENSG00000186994|ENST00000330915|KANK3	ENSG00000186994|ENST00000330915|KANK3	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.8231201171875	2	552.824224	1103.63389	-0.65284	-0.00036091	0.20079	0.000111	-0.45206	-0.00024991	552.8241738200417	127.6	1.5781	126.16	125.89	127.47	-1.4357					69	30	3	0	0	0	0.47142	1	12187	12187		58.23	12.258	1	306030			42159	8381	34811	34834	45620	45620					0.08622291402775772
PELLLLPL	8	Unmodified	_PELLLLPL_					0	0	0		nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;ENST00000382162.7_1_22:32002284-32014401:+|nuORF;nc|ENSG00000198089|A8K8P3-5|SFI1;nc|ENSG00000198089|A8K8P3-4|SFI1;ENST00000474741.5_1_22:32009833-32014520:+|nuORF	nc|ENSG00000198089|A8K8P3-10|SFI1	nc|ENSG00000198089|A8K8P3-10|SFI1	MULTI-SECPEP	OvCa99_classI_Rep5	1	453.7571105957031	2	454.296779	906.579005	2.6813	0.0012181	-2.9018	-0.0013183	-0.22055	-0.0001002	454.29529475762115	75.958	0.68222	75.958	75.723	76.405	0					36	16	3	0	0	0	0.028476	1	7636	7636		20.482	0	1	1440200			42160	8783	34812	34835	45621	45621					0.12197904602135168
PELLNMYVGE	10	Unmodified	_PELLNMYVGE_					0	0	0		nc|ENSG00000143748|O15381-3|NVL;nc|ENSG00000143748|O15381-2|NVL;nc|ENSG00000143748|O15381-5|NVL;ENSG00000143748|ENST00000281701|NVL;nc|ENSG00000143748|O15381-4|NVL	nc|ENSG00000143748|O15381-3|NVL	nc|ENSG00000143748|O15381-3|NVL	MULTI-MSMS	OvCa9_classI_Rep2	2	582.7859497070312	2	582.783907	1163.55326	0.38439	0.00022402	2.5017	0.001458	2.8861	0.001682	582.7852424232326	125.44	1.0402	125.2	124.91	125.95	-0.2359					45	20	3	0	0	0	0.53807	2	12229	12229;12247		49.536	8.1094	1	124070			42161	5089	34813	34836	45622;45623	45622					-0.02197357702470981
PELLQPYD	8	Unmodified	_PELLQPYD_					0	0	0		ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	ENSG00000128849|ENST00000281282|CGNL1	MULTI-MSMS	OvCa9_classI_Rep2	2	487.7452087402344	2	487.745108	973.475663	2.4472	0.0011936	-1.7761	-0.00086627	0.67111	0.00032733	487.74399401921767	27.829	0.93581	25.12	24.742	25.677	-2.7097					37	20	3	0	0	0	0.75241	1	534	534		25.45	6.0902	1	33068			42162	3908	34814	34837	45624	45624					-0.012136275763396043
PELQIERF	8	Unmodified	_PELQIERF_					0	0	0		ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	ENSG00000077420|ENST00000376236|APBB1IP	MULTI-MSMS	OvCa99_classI_Rep5	1	516.2816162109375	2	516.279649	1030.54475	1.8434	0.00095171	-0.14503	-7.4874E-05	1.6984	0.00087683	516.2794037285076	116.46	0.71951	116.46	116.19	116.91	0					33	15	3	0	0	0	0.26545	1	13335	13335		113.41	28.496	1	1264400			42163	1572	34815	34838	45625	45625					0.030694564432451443
PELQVAKLSK	10	Unmodified	_PELQVAKLSK_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	OvCa9_classI_Rep2	2	557.30517578125	2	556.837331	1111.66011	0.56431	0.00031423	2.5067	0.0013958	3.071	0.00171	556.8385683863619	78.313	2.1012	76.573	75.829	77.93	-1.7398					70	40	3	0	0	0	0.026674	1	6605	6605		47.96	16.43	1	112730			42164	9229	34816	34839	45626	45626					0.108745605742115
PELRDQLLDD	10	Unmodified	_PELRDQLLDD_					0	0	0		sp|P09701|US23_HCMVATegumentproteinUS23OS=Humancytomegalovirus(strainAD169)OX=10360GN=US23PE=3SV=2;sp|F5HAZ3|US23_HCMVMProteinUS23OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US23PE=3SV=1	sp|P09701|US23_HCMVATegumentproteinUS23OS=Humancytomegalovirus(strainAD169)OX=10360GN=US23PE=3SV=2	sp|P09701|US23_HCMVATegumentproteinUS23OS=Humancytomegalovirus(strainAD169)OX=10360GN=US23PE=3SV=2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	606.8809814453125	2	607.306592	1212.59863	0.22079	0.00013409	0.63019	0.00038272	0.85098	0.00051681	607.3085371505855	104.83	0.41714	102.71	102.48	102.9	-2.1192					15	7	3	0	0	0	0.027088	1	9503	9503		26.693	0	1	10828			42165	32850	34817	34840	45627	45627					0.0008358408429103292
PELRGDFMD	9	Unmodified	_PELRGDFMD_					0	0	0			REV__ENSG00000178021|ENST00000317802|TSPYL6	REV__ENSG00000178021|ENST00000317802|TSPYL6	MSMS	OvCa9_classI_Rep4_	4	540.2434692382812	2	540.244949	1078.47534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.81	1	128.35	127.85	128.85	-1.4565								0	0	0	0.17824	1	12440	12440		37.159	7.3176	1		+		42166	22039	34818	34841	45628	45628					-0.06075370567828031
PELRKKVKLFF	11	Unmodified	_PELRKKVKLFF_					0	0	0		tr|A0A7D6VQ36|A0A7D6VQ36_9CLOTDegVfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19115PE=4SV=1	tr|A0A7D6VQ36|A0A7D6VQ36_9CLOTDegVfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19115PE=4SV=1	tr|A0A7D6VQ36|A0A7D6VQ36_9CLOTDegVfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19115PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	468.95989990234375	3	468.962374	1403.86529	-5.0474	-0.002367	-1.6379	-0.00076811	-6.6853	-0.0031352	468.9614834162015	157.58	3.0388	156.04	155.07	158.11	-1.545					130	85	3	0	0	0	0.72511	1	15538	15538		14.086	0.57807	1	74235			42167	34819	34819	34842	45629	45629					0.17951339104433828
PELSFTHL	8	Unmodified	_PELSFTHL_					0	0	0			REV__ENST00000275053.8_1_6:97730318-97730883:-|nuORF	REV__ENST00000275053.8_1_6:97730318-97730883:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.28192138671875	2	472.247818	942.481082	0.43295	0.00020446	-4.27	-0.0020165	-3.8371	-0.0018121	472.24378245350505	63.124	0.24272	63.124	62.976	63.219	0					6	5	2	0	0	0	0.028476	1	5647	5647		19.36	0	1	77306	+		42168	24092	34820	34843	45630	45630					0.007540960061533042
PELSPGPFV	9	Unmodified	_PELSPGPFV_					0	0	0			REV__ENSG00000180448|ENST00000313093|ARHGAP45	REV__ENSG00000180448|ENST00000313093|ARHGAP45	MULTI-MSMS	OvCa9_classI_Rep2	2	471.7480163574219	2	471.750193	941.485833	-0.87595	-0.00041323	-3.7426	-0.0017656	-4.6185	-0.0021788	471.7482986041781	116.14	1.3366	116.03	115.69	117.02	-0.11777					59	26	3	0	0	0	0.59983	1	11100	11100		31.955	1.4512	1	260110	+		42169	22174	34821	34844	45631	45631					0.012749801489121637
PELSPIDAKVK	11	Unmodified	_PELSPIDAKVK_					0	0	0			REV__ENST00000569758.1_1_15:75646945-75647372:+|nuORF	REV__ENST00000569758.1_1_15:75646945-75647372:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	599.2905883789062	2	598.847896	1195.68124	2.8427	0.0017023	-2.0829	-0.0012473	0.7598	0.000455	598.8466952145335	102.66	0.34522	102.66	102.55	102.89	0					11	7	2	0	0	0	0.025528	1	11478	11478		35.152	0	1	173380	+		42170	19668	34822	34845	45632	45632					0.0912252588307183
PELSTQLIDI	10	Unmodified	_PELSTQLIDI_					0	0	0		TEX10|p.E856Gfs*24|1|0.03|ENSG00000136891|chr9:100303741-100303742|-/TC|frameshift_variant;nc|ENSG00000136891|Q9NXF1-2|TEX10;ENSG00000136891|ENST00000374902|TEX10	TEX10|p.E856Gfs*24|1|0.03|ENSG00000136891|chr9:100303741-100303742|-/TC|frameshift_variant	TEX10|p.E856Gfs*24|1|0.03|ENSG00000136891|chr9:100303741-100303742|-/TC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	564.805419921875	2	564.810979	1127.6074	1.5116	0.00085375	-2.5265	-0.001427	-1.015	-0.00057328	564.8094698875842	150.18	1.7096	150.18	149.79	151.5	0					106	33	6	0	0	0	0.5635	1	17638	17638		46.457	3.5925	1	1051000			42171	4530	34823	34846	45633	45633					0.04870557720778379
PELTCKSY	8	Unmodified	_PELTCKSY_					0	0	0		HERVH-int_dup2924|chr7:120779458-120782483:-|3.6914275035513295|0.0201601709888603|7.52|415.0|77|1|anti-sense	HERVH-int_dup2924|chr7:120779458-120782483:-|3.6914275035513295|0.0201601709888603|7.52|415.0|77|1|anti-sense	HERVH-int_dup2924|chr7:120779458-120782483:-|3.6914275035513295|0.0201601709888603|7.52|415.0|77|1|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	470.7249450683594	2	470.725861	939.437169	1.6004	0.00075336	-3.404	-0.0016023	-1.8036	-0.00084898	470.72413445495187	112.05	0.82472	112.05	111.74	112.57	0					35	17	3	0	0	0	0.48084	1	12776	12776		79.451	2.6044	1	786710			42172	14416	34824	34847	45634	45634					-0.034972564824897745
PELVLKDIL	9	Unmodified	_PELVLKDIL_					0	0	0		tr|A0A7D6ZWJ8|A0A7D6ZWJ8_9CLOTLPXTGcellwallanchordomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18135PE=4SV=1	tr|A0A7D6ZWJ8|A0A7D6ZWJ8_9CLOTLPXTGcellwallanchordomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18135PE=4SV=1	tr|A0A7D6ZWJ8|A0A7D6ZWJ8_9CLOTLPXTGcellwallanchordomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18135PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.3328247070312	2	520.323525	1038.6325	-1.2764	-0.00066413	-3.0885	-0.001607	-4.3648	-0.0022711	520.3216620828883	71.506	1.3203	68.049	67.727	69.047	-3.4563					47	26	2	0	0	0	0.027462	1	5548	5548		19.997	0	1	400340			42173	35844	34825	34848	45635	45635					0.11472657313993295
PELVPIET	8	Unmodified	_PELVPIET_					0	0	0		ENSG00000147996|ENST00000382405|ZNG1E;ENST00000377445.5_9:69238165-69262487:-|nuORF;ENSG00000172785|ENST00000356521|ZNG1A;ENSG00000196873|ENST00000360171|ZNG1C;ENSG00000215126|ENST00000377391|ZNG1F;nc|ENSG00000172785|Q9BRT8-3|ZNG1A;nc|ENSG00000196873|Q5JTY5-2|ZNG1C;nc|ENSG00000215126|Q5RIA9-3|ZNG1E;ENST00000495626.2_9:69245151-69262487:-|nuORF;nc|ENSG00000172785|Q9BRT8-4|ZNG1A;ENST00000377449.1_9:69261316-69262487:-|nuORF	ENSG00000147996|ENST00000382405|ZNG1E	ENSG00000147996|ENST00000382405|ZNG1E	MULTI-SECPEP	OvCa99_classI_Rep5	1	448.3092956542969	2	449.250026	896.485499	2.5705	0.0011548	1.1593	0.00052083	3.7298	0.0016756	449.25046607752233	78.255	0.53201	78.255	78.093	78.625	0					16	12	2	0	0	0	0.028476	1	7928	7928		24.203	0	1	245230			42174	5382	34826	34849	45636	45636					0.033115604290514966
PELYPSFDI	9	Unmodified	_PELYPSFDI_					0	0	0			REV__nc|ENSG00000172216|P17676-2|CEBPB	REV__nc|ENSG00000172216|P17676-2|CEBPB	MULTI-MSMS	OvCa99_classI_Rep5	1	540.7658081054688	2	540.76604	1079.51753	2.0802	0.0011249	-2.8331	-0.0015321	-0.75297	-0.00040718	540.7642834693839	78.235	0.86623	78.235	77.884	78.75	0					56	20	3	0	0	0	0.38529	1	7906	7906		53.351	8.9743	1	4683800	+		42175	21683	34827	34850	45637	45637					-0.019050718877906547
PENIVRLIKLG	11	Unmodified	_PENIVRLIKLG_					0	0	0			REV__ENSG00000155304|ENST00000285667|HSPA13	REV__ENSG00000155304|ENST00000285667|HSPA13	MULTI-MSMS	OvCa9_classI_Rep2	2	626.3914184570312	2	626.392805	1250.77106	-5.6586	-0.0035445	-3.473	-0.0021755	-9.1316	-0.00572	626.8920656002647	163.54	1.1058	163.31	162.97	164.08	-0.22697					56	36	2	0	0	0	0.69808	1	16652	16652		30.318	4.7437	1	65883	+		42176	20419	34828	34851	45638	45638					0.15570200282309088
PENKLFRGF	9	Unmodified	_PENKLFRGF_					0	0	0			REV__ENSG00000139173|ENST00000266534|TMEM117	REV__ENSG00000139173|ENST00000266534|TMEM117	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.8285522460938	2	554.300916	1106.58728	2.4394	0.0013521	-4.0739	-0.0022582	-1.6346	-0.00090603	554.2984441564587	86.133	1.1429	86.133	85.87	87.013	0					44	27	3	0	0	0	0.027462	1	9140	9140		21.96	0	1	1317100	+		42177	19593	34829	34852	45639	45639					0.038248515714712994
PENLWAKL	8	Unmodified	_PENLWAKL_					0	0	0			REV__IRX2|p.H136P|1|0.16|ENSG00000170561|chr5:2749630-2749630|T/G|missense_variant	REV__IRX2|p.H136P|1|0.16|ENSG00000170561|chr5:2749630-2749630|T/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.78887939453125	2	485.77146	969.528367	-0.25844	-0.00012554	-3.6107	-0.001754	-3.8691	-0.0018795	485.7696398352825	76.625	1.0002	73.686	73.365	74.366	-2.9389					27	20	2	0	0	0	0.028476	1	6076	6076		58.782	0	1	95318	+		42178	28315	34830	34853	45640	45640					0.04238375277122941
PENNSPGI	8	Unmodified	_PENNSPGI_					0	0	0		nc|ENSG00000102290|Q9BZA7-7|PCDH11X;nc|ENSG00000102290|Q9BZA7-2|PCDH11X;ENST00000361724.3_1_X:91090458-91134302:+|nuORF;nc|ENSG00000099715|Q9BZA8-3|PCDH11Y;nc|ENSG00000099715|Q9BZA8-2|PCDH11Y;nc|ENSG00000099715|Q9BZA8-4|PCDH11Y;nc|ENSG00000102290|Q9BZA7-6|PCDH11X;ENSG00000099715|ENST00000698851|PCDH11Y;nc|ENSG00000102290|Q9BZA7-5|PCDH11X;nc|ENSG00000102290|Q9BZA7-4|PCDH11X;nc|ENSG00000102290|Q9BZA7-3|PCDH11X;nc|ENSG00000102290|Q9BZA7-8|PCDH11X;nc|ENSG00000099715|Q9BZA8|PCDH11Y;ENSG00000102290|ENST00000682573|PCDH11X	nc|ENSG00000102290|Q9BZA7-7|PCDH11X	nc|ENSG00000102290|Q9BZA7-7|PCDH11X	MULTI-MSMS	OvCa99_classI_Rep5	1	414.20123291015625	2	414.198325	826.382096	3.4392	0.0014245	4.4203	0.0018309	7.8594	0.0032554	414.2000737569069	88.856	2.266	88.856	88.044	90.31	0					112	54	3	0	0	0	0.45246	4	9493	9432;9460;9493;9523		82.305	13.518	1	4153000			42179	1974	34831	34854	45641;45642;45643;45644	45643					-0.03803926958767079
PENPKLEML	9	Unmodified	_PENPKLEML_					0	0	0		ENSG00000108771|ENST00000251642|DHX58;ENST00000586522.5_1_17:40255624-40263910:-|nuORF	ENSG00000108771|ENST00000251642|DHX58	ENSG00000108771|ENST00000251642|DHX58	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.8153076171875	2	535.781167	1069.54778	-1.9426	-0.0010408	2.4694	0.0013231	0.52676	0.00028223	535.781838298498	44.908	1.3939	41.87	41.464	42.858	-3.0385					60	26	4	0	0	0	0.027448	1	2271	2271		53.351	21.822	1	152840			42180	2672	34832	34855	45645	45645					0.015789635057444684
PENSRVLRV	9	Unmodified	_PENSRVLRV_					0	0	0		ENST00000578001.1_1_17:27182052-27185217:+|nuORF;nc|ENSG00000132591|O75616-2|ERAL1;ENSG00000132591|ENST00000254928|ERAL1	ENST00000578001.1_1_17:27182052-27185217:+|nuORF	ENST00000578001.1_1_17:27182052-27185217:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.3162841796875	2	535.309272	1068.60399	-2.9644	-0.0015869	3.3803	0.0018095	0.41581	0.00022259	535.3119148598201	108.15	1.7459	106.35	105.92	107.67	-1.7917					66	34	3	0	0	0	0.44568	1	9887	9887		47.657	3.5405	1	117250			42181	4150	34833	34856	45646	45646					0.07243352457408037
PENTQAPA	8	Unmodified	_PENTQAPA_					0	0	0		ENSG00000134398|ENST00000256797|ERN2	ENSG00000134398|ENST00000256797|ERN2	ENSG00000134398|ENST00000256797|ERN2	MULTI-MSMS	OvCa99_classI_Rep5	1	414.2032165527344	2	414.198325	826.382096	3.4392	0.0014245	4.4203	0.0018309	7.8594	0.0032554	414.2000737569069	88.856	2.266	88.856	88.044	90.31	0					112	54	3	0	0	0	0.64026	1	9403	9403		55.504	0.73953	1	4153000			42182	4294	34834	34857	45647	45647					-0.03803926958767079
PEPAPRLLGL	10	Unmodified	_PEPAPRLLGL_					0	0	0			REV__nc|ENSG00000116604|Q14814-6|MEF2D	REV__nc|ENSG00000116604|Q14814-6|MEF2D	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8163452148438	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.6349	1	13898	13898		37.812	4.9991	1	166960	+		42183	18307	34835	34858	45648	45648					0.09498308748334239
PEPEKLVPL	9	Unmodified	_PEPEKLVPL_					0	0	0			REV__nc|ENSG00000152763|Q5VTH9-2|DNAI4	REV__nc|ENSG00000152763|Q5VTH9-2|DNAI4	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.8169250488281	2	511.30005	1020.58555	1.2397	0.00063386	-0.77336	-0.00039542	0.46635	0.00023844	511.29983515434577	145.5	0.40601	145.5	145.32	145.73	0					15	8	3	0	0	0	0.027462	1	16995	16995		37.159	0	1	49927	+		42184	20301	34836	34859	45649	45649					0.07607797762852897
PEPEPGQLY	9	Unmodified	_PEPEPGQLY_					0	0	0			REV__ENSG00000130702|ENST00000252999|LAMA5	REV__ENSG00000130702|ENST00000252999|LAMA5	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.8290405273438	2	515.248015	1028.48148	0.090336	4.6546E-05	2.3976	0.0012353	2.4879	0.0012819	515.7513143838029	133.71	0.34535	132.59	132.37	132.72	-1.1226					10	6	2	0	0	0	0.027462	1	10757	10757		27.882	4.8398	1	14950	+		42185	18961	34837	34860	45650	45650					-0.03162529064638875
PEPHQRPI	8	Unmodified	_PEPHQRPI_					0	0	0		ENSG00000079435|ENST00000244289|LIPE;LIPE|p.K223Efs*5|1|0.04|ENSG00000079435|chr19:42426483-42426484|-/C|frameshift_variant	ENSG00000079435|ENST00000244289|LIPE	ENSG00000079435|ENST00000244289|LIPE	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.7645568847656	2	487.264333	972.514114	-0.47336	-0.00023065	4.2488	0.0020703	3.7755	0.0018397	487.2664200740191	43.325	0.72489	43.325	42.796	43.521	0					20	16	2	0	0	0	0.028476	1	2845	2845		40.573	20.091	1	986080			42186	1616	34838	34861	45651	45651					0.026757228488463625
PEPKRLIME	9	Oxidation (M)	_PEPKRLIM(Oxidation (M))E_		PEPKRLIM(1)E		PEPKRLIM(51)E	0	0	1			REV__ENSG00000218819|ENST00000405799|TDRD15	REV__ENSG00000218819|ENST00000405799|TDRD15	MULTI-MSMS	OvCa99_classI_Rep5	1	564.8079223632812	2	564.807716	1127.60088	1.5116	0.00085375	3.2499	0.0018356	4.7615	0.0026893	564.8094698875842	150.18	1.7096	150.18	149.79	151.5	0					106	33	6	0	0	0	0.40667	1	17669	17669		51.335	6.9583	1	1051000	+		42187	23329	34839	34862	45652	45652		545			0.042183412884014615
PEPLLYLLPL	10	Unmodified	_PEPLLYLLPL_					0	0	0			REV__ENST00000590238.1_1_19:3754325-3760115:-|nuORF	REV__ENST00000590238.1_1_19:3754325-3760115:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3555908203125	2	584.354825	1166.6951	-1.7162	-0.0010029	4.4897	0.0026236	2.7735	0.0016207	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.76627	1	14134	14134		23.042	3.0457	1	833330	+		42188	27916	34840	34863	45653	45653					0.1184180338218539
PEPPSGRTES	10	Unmodified	_PEPPSGRTES_					0	0	0		nc|ENSG00000113810|Q9NTJ3-2|SMC4;ENSG00000113810|ENST00000357388|SMC4;ENST00000468653.5_1_3:160117521-160130242:+|nuORF	nc|ENSG00000113810|Q9NTJ3-2|SMC4	nc|ENSG00000113810|Q9NTJ3-2|SMC4	MULTI-MSMS	OvCa99_classI_Rep5	1	528.7503662109375	2	528.751453	1055.48835	0.69418	0.00036705	-4.2388	-0.0022413	-3.5446	-0.0018742	528.7490301574554	139.93	3.5152	139.93	139.32	142.83	0					142	71	3	0	0	0	0.58067	2	16351	16326;16351		44.377	3.8046	1	525790			42189	2997	34841	34864	45654;45655	45655					-0.03717216184099925
PEPQLPTI	8	Unmodified	_PEPQLPTI_					0	0	0		B3GAT2|p.L221Pfs*52|1|0.07|ENSG00000112309|chr6:70894202-70894203|-/CATTTTAGAACGTGTGGTCCTACTGCAG|frameshift_variant;ENSG00000112309|ENST00000230053|B3GAT2	B3GAT2|p.L221Pfs*52|1|0.07|ENSG00000112309|chr6:70894202-70894203|-/CATTTTAGAACGTGTGGTCCTACTGCAG|frameshift_variant	B3GAT2|p.L221Pfs*52|1|0.07|ENSG00000112309|chr6:70894202-70894203|-/CATTTTAGAACGTGTGGTCCTACTGCAG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	447.7529602050781	2	447.750193	893.485833	0.53286	0.00023859	4.3943	0.0019676	4.9272	0.0022061	447.7520412456086	142.65	1.8574	141.21	139.73	141.59	-1.4427					44	35	2	0	0	0	0.75241	1	13964	13964		25.45	4.9683	1	27018			42190	139	34842	34865	45656	45656					0.03482980148908155
PEPQVRAAQLT	11	Unmodified	_PEPQVRAAQLT_					0	0	0			REV__nc|ENSG00000065534|Q15746-2|MYLK	REV__nc|ENSG00000065534|Q15746-2|MYLK	MULTI-SECPEP	OvCa99_classI_Rep5	1	403.8799133300781	3	403.891055	1208.65134	1.4961	0.00060427	-1.8013	-0.00072751	-0.30513	-0.00012324	403.89029754993027	45.169	0.47662	45.169	44.977	45.454	0					17	10	2	0	0	0	0.025568	1	3122	3122		21.032	6.3386	1	259240	+		42191	16797	34843	34866	45657	45657					0.05535586937753578
PEPRPPAR	8	Unmodified	_PEPRPPAR_					0	0	0		nc|ENSG00000160058|Q9NW68-9|BSDC1;nc|ENSG00000160058|Q9NW68-4|BSDC1;nc|ENSG00000160058|Q9NW68-8|BSDC1;nc|ENSG00000160058|Q9NW68-2|BSDC1;ENSG00000160058|ENST00000455895|BSDC1;nc|ENSG00000160058|Q9NW68-7|BSDC1;nc|ENSG00000160058|Q9NW68-3|BSDC1	nc|ENSG00000160058|Q9NW68-9|BSDC1	nc|ENSG00000160058|Q9NW68-9|BSDC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	461.2441711425781	2	460.259051	918.503549	-0.47482	-0.00021854	0.68537	0.00031545	0.21055	9.6907E-05	460.2590450551841	38.438	0.45388	38.438	38.207	38.661	0					16	9	3	0	0	0	0.028476	1	2173	2173		3.1592	0	1	66030			42192	6035	34844	34867	45658	45658					0.04103740194409511
PEPRTGVG	8	Unmodified	_PEPRTGVG_					0	0	0		ENST00000548760.2_1_12:98909161-98909923:-|nuORF;ENST00000546421.1_1_12:98909108-98909923:-|nuORF	ENST00000548760.2_1_12:98909161-98909923:-|nuORF	ENST00000548760.2_1_12:98909161-98909923:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	406.71978759765625	2	406.716685	811.418816	2.904	0.0011811	4.2181	0.0017156	7.122	0.0028966	406.7183033094082	111.06	0.70972	111.06	110.71	111.42	0					30	15	3	0	0	0	0.62934	1	12617	12617		57.811	1.0902	1	687160			42193	13534	34845	34868	45659	45659					0.005563696578292365
PEPSCSAVRIT	11	Unmodified	_PEPSCSAVRIT_					0	0	0		ENSG00000066697|ENST00000395067|MSANTD3	ENSG00000066697|ENST00000395067|MSANTD3	ENSG00000066697|ENST00000395067|MSANTD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.8197631835938	2	580.29243	1158.57031	-1.1491	-0.0006668	-1.3605	-0.0007895	-2.5096	-0.0014563	580.7924308882951	34.089	0.2403	34.089	33.873	34.113	0					5	4	2	0	0	0	0.025277	1	1618	1618		32.751	4.8683	1	15324			42194	1357	34846	34869	45660	45660					-0.0026343709664615744
PEPSGEKDL	9	Unmodified	_PEPSGEKDL_					0	0	0			REV__nc|ENSG00000244482|Q6PI73-2|LILRA6	REV__nc|ENSG00000244482|Q6PI73-2|LILRA6	MULTI-MSMS	OvCa99_classI_Rep5	1	486.2394714355469	2	486.237647	970.460741	-0.40084	-0.0001949	1.1589	0.00056352	0.75811	0.00036862	486.23807952492217	53.131	4.8343	53.131	51.747	56.581	0					169	114	2	0	0	0	0.42676	1	4220	4220		49.442	1.7842	1	978250	+		42195	23170	34847	34870	45661	45661					-0.025671194443361856
PEPVPTTHSI	10	Unmodified	_PEPVPTTHSI_					0	0	0		tr|A0A553SFF1|A0A553SFF1_NIACIGluconokinaseOS=NialliacirculansOX=1397GN=gntKPE=3SV=1	tr|A0A553SFF1|A0A553SFF1_NIACIGluconokinaseOS=NialliacirculansOX=1397GN=gntKPE=3SV=1	tr|A0A553SFF1|A0A553SFF1_NIACIGluconokinaseOS=NialliacirculansOX=1397GN=gntKPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	539.2783813476562	2	539.282389	1076.55022	-4.5199	-0.0024375	-2.9609	-0.0015968	-7.4808	-0.0040343	539.2808318920751	153.09	0.86078	151.66	151.27	152.13	-1.4351					34	19	3	0	0	0	0.72319	1	15164	15164		27.882	3.3631	1	34140			42196	33032	34848	34871	45662	45662					0.01501135235048423
PEPVPTTHSI	10	Unmodified	_PEPVPTTHSI_					0	0	0		tr|A0A553SFF1|A0A553SFF1_NIACIGluconokinaseOS=NialliacirculansOX=1397GN=gntKPE=3SV=1	tr|A0A553SFF1|A0A553SFF1_NIACIGluconokinaseOS=NialliacirculansOX=1397GN=gntKPE=3SV=1	tr|A0A553SFF1|A0A553SFF1_NIACIGluconokinaseOS=NialliacirculansOX=1397GN=gntKPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	539.282389	1076.55022	-4.2025	-0.0022663	-3.6665	-0.0019773	-7.8691	-0.0042436	539.2799639080246	152.59	0.30006	151.62	151.45	151.75	-0.97301	-0.017212	-0.0006019	NaN	27.882	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13507			42197	33032	34848	34871							0.01501135235048423
PEQEKGIDINS	11	Unmodified	_PEQEKGIDINS_					0	0	0		tr|A0A553SI38|A0A553SI38_NIACIOctanoyl-[GcvH]:proteinN-octanoyltransferaseOS=NialliacirculansOX=1397GN=lipLPE=3SV=1	tr|A0A553SI38|A0A553SI38_NIACIOctanoyl-[GcvH]:proteinN-octanoyltransferaseOS=NialliacirculansOX=1397GN=lipLPE=3SV=1	tr|A0A553SI38|A0A553SI38_NIACIOctanoyl-[GcvH]:proteinN-octanoyltransferaseOS=NialliacirculansOX=1397GN=lipLPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	614.8314208984375	2	615.304049	1228.59355	1.0153	0.00062471	3.3645	0.0020702	4.3798	0.0026949	615.8079311344884	150.82	0.20102	150.82	150.64	150.84	0					5	3	2	0	0	0	0.025656	1	17659	17659		20.03	0	1	12397			42198	33339	34849	34872	45663	45663					-0.01160719778317798
PEQIPPMV	8	Unmodified	_PEQIPPMV_					0	0	0			REV__ENST00000340648.5_1_21:45114371-45114962:+|nuORF	REV__ENST00000340648.5_1_21:45114371-45114962:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	455.77630615234375	2	455.738771	909.462989	0.11389	5.1903E-05	0.32928	0.00015006	0.44316	0.00020197	455.739341805948	39.528	0.44664	36.602	36.296	36.742	-2.9264					11	8	2	0	0	0	0.028476	1	1639	1639		25.45	0	1	7933.2	+		42199	24626	34850	34873	45664	45664					0.004636377597876162
PEQLMKYH	8	Unmodified	_PEQLMKYH_					0	0	0		nc|ENSG00000071991|Q9H159-2|CDH19;ENSG00000071991|ENST00000262150|CDH19	nc|ENSG00000071991|Q9H159-2|CDH19	nc|ENSG00000071991|Q9H159-2|CDH19	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.259033203125	2	523.260402	1044.50625	-0.58979	-0.00030861	-3.2383	-0.0016945	-3.8281	-0.0020031	523.258531387231	20.8	3.0068	19.461	18.803	21.81	-1.3386					123	66	2	0	0	0	0.73626	1	104	104		33.516	1.5607	1	51368			42200	1460	34851	34874	45665	45665					-0.014221724629351229
PEQLRRCL	8	Unmodified	_PEQLRRCL_					0	0	0			REV__ENST00000534054.1_1_11:67397109-67397382:-|nuORF	REV__ENST00000534054.1_1_11:67397109-67397382:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	507.7811584472656	2	507.779293	1013.54403	0.9903	0.00050285	0.55387	0.00028124	1.5442	0.0007841	507.77922985648723	142.51	0.69714	142.51	142.18	142.88	0					32	13	3	0	0	0	0.74229	1	16685	16685		30.504	2.2494	1	193100	+		42201	27262	34852	34875	45666	45666					0.037803385225288366
PEQNKKDEI	9	Unmodified	_PEQNKKDEI_					0	0	0		tr|A0A553SQJ7|A0A553SQJ7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07805PE=4SV=1	tr|A0A553SQJ7|A0A553SQJ7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07805PE=4SV=1	tr|A0A553SQJ7|A0A553SQJ7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07805PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	549.8305053710938	2	550.782753	1099.55095	-1.4574	-0.00080274	4.1183	0.0022683	2.6609	0.0014656	550.7849662314904	83.052	0.72524	80.756	80.629	81.354	-2.2963					20	14	2	0	0	0	0.027462	1	4706	4706		35.618	8.9254	1	41557			42202	34168	34853	34876	45667	45667					0.005159298840908377
PEQTYNME	8	Unmodified	_PEQTYNME_					0	0	0			REV__nc|ENSG00000070882|Q9H4L5-8|OSBPL3	REV__nc|ENSG00000070882|Q9H4L5-8|OSBPL3	MULTI-MSMS	OvCa99_classI_Rep5	1	506.21063232421875	2	506.208032	1010.40151	1.6205	0.0008203	3.5161	0.0017799	5.1366	0.0026002	506.2097508061876	93.694	0.53775	93.694	93.426	93.964	0					20	12	2	0	0	0	0.71369	1	10178	10178		40.573	1.7665	1	1160200	+		42203	16891	34854	34877	45668	45668					-0.10327338730155589
PEQTYNME	8	Unmodified	_PEQTYNME_					0	0	0			REV__nc|ENSG00000070882|Q9H4L5-8|OSBPL3	REV__nc|ENSG00000070882|Q9H4L5-8|OSBPL3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	506.208032	1010.40151	-1.2503	-0.00063294	4.3219	0.0021878	3.0715	0.0015548	506.2100712899343	95.711	1.1407	93.883	93.531	94.672	-1.8286	-0.0064905	0.00067494	NaN	40.573	48	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146700	+		42204	16891	34854	34877							-0.10327338730155589
PEQTYNME	8	Unmodified	_PEQTYNME_					0	0	0			REV__nc|ENSG00000070882|Q9H4L5-8|OSBPL3	REV__nc|ENSG00000070882|Q9H4L5-8|OSBPL3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	506.208032	1010.40151	0.2239	0.00011334	3.109	0.0015738	3.3329	0.0016871	506.20947606072974	96.516	1.0017	94.091	93.811	94.812	-2.4256	0.20177	-0.00055301	NaN	40.573	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172890	+		42205	16891	34854	34877							-0.10327338730155589
PEQVLSVPDDL	11	Unmodified	_PEQVLSVPDDL_					0	0	0		ENSG00000139620|ENST00000420613|KANSL2	ENSG00000139620|ENST00000420613|KANSL2	ENSG00000139620|ENST00000420613|KANSL2	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3150024414062	2	606.311343	1210.60813	0.11107	6.7344E-05	4.2947	0.0026039	4.4058	0.0026713	606.3137213799537	91.429	2.9368	88.886	88.04	90.976	-2.5425					138	57	4	0	0	0	0.61983	1	7917	7917		42.864	1.4377	1	307050			42206	4789	34855	34878	45669	45669					0.011253523698314893
PEQVLSVPDDL	11	Unmodified	_PEQVLSVPDDL_					0	0	0		ENSG00000139620|ENST00000420613|KANSL2	ENSG00000139620|ENST00000420613|KANSL2	ENSG00000139620|ENST00000420613|KANSL2	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3158569335938	2	606.311343	1210.60813	0.25387	0.00015392	3.6506	0.0022134	3.9045	0.0023673	606.3134601126474	98.83	1.4417	96.504	95.924	97.366	-2.3253					71	27	3	0	0	0	0.61983	1	8799	8799		42.864	3.6114	1	637760			42207	4789	34855	34878	45670	45670					0.011253523698314893
PERAALSS	8	Unmodified	_PERAALSS_					0	0	0			REV__ENSG00000204128|ENST00000373640|C2orf72	REV__ENSG00000204128|ENST00000373640|C2orf72	MULTI-MSMS	OvCa9_classI_Rep3	3	415.72216796875	2	415.721967	829.429381	1.7526	0.00072857	-1.9593	-0.00081452	-0.20674	-8.5945E-05	415.72103499680065	120.01	1.8058	118.98	118.63	120.43	-1.0271					63	35	3	0	0	0	0.74229	1	9150	9150		30.504	5.0535	1	271890	+		42208	23127	34856	34879	45671	45671					0.00784352312223291
PERCWTLLL	9	Unmodified	_PERCWTLLL_					0	0	0		ENST00000491863.1_1_22:46725205-46725322:+|nuORF	ENST00000491863.1_1_22:46725205-46725322:+|nuORF	ENST00000491863.1_1_22:46725205-46725322:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	565.8079223632812	2	565.804977	1129.5954	2.401	0.0013585	2.5962	0.0014689	4.9972	0.0028274	565.8062740813734	77.04	1.5355	77.04	76.678	78.214	0					71	36	3	0	0	0	0.13482	2	7757	7757;7790		87.754	0.057861	1	6859800			42209	12718	34857	34880	45672;45673	45672					0.035786624965794545
PEREDVRKN	9	Unmodified	_PEREDVRKN_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.K1327Rfs*8|1|0.05|ENSG00000065526|chr1:15930219-15930220|-/G|frameshift_variant;SPEN|p.L1328Vfs*10|1|0.05|ENSG00000065526|chr1:15930221-15930222|-/GTCCAATCAAAAAAGCC|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-SECPEP	OvCa9_classI_Rep3	3	570.8228149414062	2	571.799269	1141.58398	-1.4804	-0.0008465	4.2562	0.0024337	2.7758	0.0015872	571.8019633176185	84.564	0.86999	82.303	81.881	82.751	-2.261					24	17	2	0	0	0	0.027462	1	4885	4885		20.947	0	1	14688			42210	1329	34858	34881	45674	45674					0.018855567268019513
PERELAEV	8	Unmodified	_PERELAEV_					0	0	0			REV__ENSG00000162714|ENST00000682384|ZNF496	REV__ENSG00000162714|ENST00000682384|ZNF496	MULTI-MSMS	OvCa9_classI_Rep2	2	471.7484130859375	2	471.748182	941.481811	-0.87595	-0.00041323	0.52109	0.00024582	-0.35487	-0.00016741	471.7482986041781	116.14	1.3366	116.03	115.69	117.02	-0.11777					59	26	3	0	0	0	0.7224	1	11106	11106		38.806	1.647	1	260110	+		42211	20768	34859	34882	45675	45675					0.008728906551937143
PERELAEV	8	Unmodified	_PERELAEV_					0	0	0			REV__ENSG00000162714|ENST00000682384|ZNF496	REV__ENSG00000162714|ENST00000682384|ZNF496	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.7474060058594	2	471.748182	941.481811	0.32588	0.00015373	-0.89545	-0.00042243	-0.56956	-0.00026869	471.7476954095205	117.11	2.2576	115.75	115.46	117.71	-1.3645					72	42	3	0	0	0	0.7224	2	10936	10936;10959		38.806	5.2906	1	454660	+		42212	20768	34859	34882	45676;45677	45676					0.008728906551937143
PEREVDFPF	9	Unmodified	_PEREVDFPF_					0	0	0			REV__nc|ENSG00000205744|Q8IV53-2|DENND1C	REV__nc|ENSG00000205744|Q8IV53-2|DENND1C	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.2421264648438	2	568.274564	1134.53457	0.12098	6.8752E-05	1.4077	0.00079993	1.5286	0.00086869	568.2756740436499	60.923	0.29755	60.923	60.816	61.113	0					8	6	2	0	0	0	0.027462	1	5344	5344		24.203	0	1	213410	+		42213	23227	34860	34883	45678	45678					-0.0273115128200061
PERLFLGVSR	10	Unmodified	_PERLFLGVSR_					0	0	0		ENSG00000204946|ENST00000434415|ZNF783	ENSG00000204946|ENST00000434415|ZNF783	ENSG00000204946|ENST00000434415|ZNF783	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.3272705078125	2	587.340572	1172.66659	-0.13394	-7.8666E-05	2.4338	0.0014295	2.2998	0.0013508	587.341965287001	60.818	0.2974	60.818	60.646	60.943	0					8	6	2	0	0	0	0.027145	1	5318	5318		18.262	0.79408	1	101070			42214	9039	34861	34884	45679	45679					0.08716498525586758
PERLLAELP	9	Unmodified	_PERLLAELP_					0	0	0		ENSG00000188937|ENST00000378220|NYX	ENSG00000188937|ENST00000378220|NYX	ENSG00000188937|ENST00000378220|NYX	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.293212890625	2	519.303124	1036.5917	2.5302	0.0013139	-0.61592	-0.00031985	1.9142	0.00099407	519.3027119943755	88.657	1.3449	88.657	88.171	89.516	0					44	32	2	0	0	0	0.027441	1	9409	9409		40.778	14.085	1	815580			42215	8520	34862	34885	45680	45680					0.07486315994378856
PERLSSAAPP	10	Unmodified	_PERLSSAAPP_					0	0	0			REV__ENSG00000133030|ENST00000651222|MPRIP;REV__nc|ENSG00000133030|Q6WCQ1|MPRIP	REV__ENSG00000133030|ENST00000651222|MPRIP	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.3148803710938	2	512.774731	1023.53491	2.0751	0.001064	0.42715	0.00021903	2.5022	0.0012831	512.7748657819723	95.319	0.37682	95.319	95.161	95.538	0					14	8	2	0	0	0	0.026915	1	10391	10391		35.618	26.435	1	361310	+		42216	19120;28855	34863	34886	45681	45681					0.024082684378413433
PERPASSPPVW	11	Unmodified	_PERPASSPPVW_					0	0	0			REV__ENSG00000167476|ENST00000300961|JSRP1	REV__ENSG00000167476|ENST00000300961|JSRP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	612.3163452148438	2	611.814387	1221.61422	2.5831	0.0015804	3.1953	0.0019549	5.7784	0.0035353	611.8162492761442	115.61	1.1585	115.61	115.35	116.51	0					47	24	3	0	0	0	0.025344	1	13287	13287		41.427	0	1	1452500	+		42217	21279	34864	34887	45682	45682					0.012279153919735109
PERQPGRLRTQ	11	Unmodified	_PERQPGRLRTQ_					0	0	0		ENST00000237536.8_2_20:35412206-35412971:-|nuORF	ENST00000237536.8_2_20:35412206-35412971:-|nuORF	ENST00000237536.8_2_20:35412206-35412971:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	447.263427734375	3	446.584736	1336.73238	-0.84871	-0.00037902	3.8648	0.001726	3.0161	0.0013469	446.5863802027092	43.828	1.2167	40.821	40.378	41.595	-3.0074					43	23	2	0	0	0	0.02609	1	2087	2087		18.332	0	1	43764			42218	9741	34865	34888	45683	45683					0.07748287700496803
PERRLACL	8	Unmodified	_PERRLACL_					0	0	0		ENST00000340957.9_1_3:184053818-184059926:+|nuORF	ENST00000340957.9_1_3:184053818-184059926:+|nuORF	ENST00000340957.9_1_3:184053818-184059926:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	479.2699279785156	2	479.268561	956.52257	1.1517	0.00055195	0.93594	0.00044857	2.0876	0.0010005	479.26875215250976	83.358	0.59358	83.358	83.12	83.714	0					31	13	3	0	0	0	0.69415	1	8682	8682		44.531	0	1	1578400			42219	10563	34866	34889	45684	45684					0.04256953493825222
PERRTTLE	8	Unmodified	_PERRTTLE_					0	0	0		ENST00000472072.5_1_2:242045983-242047931:-|nuORF;ENSG00000115687|ENST00000234040|PASK;nc|ENSG00000115687|Q96RG2-2|PASK	ENST00000472072.5_1_2:242045983-242047931:-|nuORF	ENST00000472072.5_1_2:242045983-242047931:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.314697265625	2	501.272355	1000.53016	-0.99217	-0.00049735	2.0088	0.0010069	1.0166	0.00050959	501.2725704482996	27.167	0.1983	27.167	27.043	27.241	0					5	3	2	0	0	0	0.028476	1	764	764		26.796	2.2769	1	17338			42220	3120	34867	34890	45685	45685					0.029913842950804792
PESALACGGNL	11	Carbamidomethyl (C)	_PESALAC(Carbamidomethyl (C))GGNL_	PESALAC(1)GGNL		PESALAC(58)GGNL		0	1	0		nc|ENSG00000230366|P59020|DSCR9	nc|ENSG00000230366|P59020|DSCR9	nc|ENSG00000230366|P59020|DSCR9	MULTI-MSMS	OvCa99_classI_Rep5	1	544.7578735351562	2	544.755681	1087.49681	1.3336	0.00072648	1.3359	0.00072775	2.6695	0.0014542	544.7562608913173	119.12	0.61025	119.12	118.81	119.43	0					26	12	3	0	0	0	0.43993	1	13670	13670		58.23	8.7884	1	548890			42221	15329	34868	34891	45686	45686	175				-0.04343985539139794
PESALACGGNL	11	Carbamidomethyl (C)	_PESALAC(Carbamidomethyl (C))GGNL_					0	1	0		nc|ENSG00000230366|P59020|DSCR9	nc|ENSG00000230366|P59020|DSCR9	nc|ENSG00000230366|P59020|DSCR9	MULTI-MATCH	OvCa9_classI_Rep2	2		2	544.755681	1087.49681	-1.9133	-0.0010423	-4.0083	-0.0021835	-5.9216	-0.0032258	544.753419306539	119.19	0.78732	119.02	118.76	119.55	-0.17138	0.075036	-0.00095229	NaN	58.23	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28776			42222	15329	34868	34891			175				-0.04343985539139794
PESALACGGNL	11	Carbamidomethyl (C)	_PESALAC(Carbamidomethyl (C))GGNL_					0	1	0		nc|ENSG00000230366|P59020|DSCR9	nc|ENSG00000230366|P59020|DSCR9	nc|ENSG00000230366|P59020|DSCR9	MULTI-MATCH	OvCa9_classI_Rep3	3		2	544.755681	1087.49681	0.73386	0.00039978	-6.8691	-0.003742	-6.1353	-0.0033422	544.7518809590981	119.83	0.88559	118.81	118.58	119.46	-1.0271	-0.13501	-0.0040692	NaN	58.23	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54297			42223	15329	34868	34891			175				-0.04343985539139794
PESALACGGNL	11	Carbamidomethyl (C)	_PESALAC(Carbamidomethyl (C))GGNL_					0	1	0		nc|ENSG00000230366|P59020|DSCR9	nc|ENSG00000230366|P59020|DSCR9	nc|ENSG00000230366|P59020|DSCR9	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	544.755681	1087.49681	-1.6363	-0.00089137	-4.3818	-0.002387	-6.0181	-0.0032784	544.7533103099491	120.17	0.83701	118.82	118.56	119.4	-1.3444	-0.11799	-0.0013593	NaN	58.23	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51720			42224	15329	34868	34891			175				-0.04343985539139794
PESESVLVLT	10	Unmodified	_PESESVLVLT_					0	0	0		ENSG00000249715|ENST00000624922|FER1L5;nc|ENSG00000249715|A0AVI2-4|FER1L5;nc|ENSG00000249715|A0AVI2-2|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	ENSG00000249715|ENST00000624922|FER1L5	MULTI-SECPEP	OvCa9_classI_Rep3	3	537.8048095703125	2	537.289879	1072.56521	0.90852	0.00048814	-1.4924	-0.00080185	-0.58387	-0.00031371	537.7913096236599	73.885	0.44563	71.398	71.175	71.62	-2.4873					17	8	3	0	0	0	0.027056	1	3650	3650		20.947	0	1	28242			42225	9412	34869	34892	45687	45687					0.03182582312388149
PESEWHQGT	9	Unmodified	_PESEWHQGT_					0	0	0		ENST00000236137.9_1_1:169446483-169446612:-|nuORF	ENST00000236137.9_1_1:169446483-169446612:-|nuORF	ENST00000236137.9_1_1:169446483-169446612:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.7052001953125	2	535.73052	1069.44649	0.084255	4.5138E-05	-1.4927	-0.00079971	-1.4085	-0.00075457	535.7283737427776	32.433	0.39718	32.433	32.254	32.651	0					10	7	2	0	0	0	0.027426	1	1402	1402		47.657	0	1	17051			42226	9739	34870	34893	45688	45688					-0.08545771872627483
PESHSLSGSI	10	Unmodified	_PESHSLSGSI_					0	0	0			REV__nc|ENSG00000141449|Q9C091-3|GREB1L	REV__nc|ENSG00000141449|Q9C091-3|GREB1L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.7653503417969	2	507.248546	1012.48254	3.5003	0.0017755	-2.9594	-0.0015011	0.54096	0.0002744	507.2465741655338	132.71	0.24191	131.21	131.1	131.34	-1.5015					6	4	2	0	0	0	0.026849	1	12771	12771		25.574	0	1	7105.7	+		42227	19740	34871	34894	45689	45689					-0.023203146957484932
PESKGPVN	8	Unmodified	_PESKGPVN_					0	0	0			REV__tr|A0A7D6VTY5|A0A7D6VTY5_9CLOTLPXTGcellwallanchordomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23330PE=3SV=1	REV__tr|A0A7D6VTY5|A0A7D6VTY5_9CLOTLPXTGcellwallanchordomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23330PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	413.24005126953125	2	414.216517	826.418482	-0.50705	-0.00021003	2.7974	0.0011587	2.2904	0.00094872	414.2172334894581	63.633	0.94734	60.888	60.266	61.214	-2.7444					20	17	2	0	0	0	0.028476	1	4854	4854		11.511	0	1	14300	+		42228	31639	34872	34895	45690	45690					-0.0016705006204347228
PESKHEILS	9	Unmodified	_PESKHEILS_					0	0	0		nc|ENSG00000068912|Q96DZ1-2|ERLEC1;ENSG00000068912|ENST00000185150|ERLEC1;nc|ENSG00000068912|Q96DZ1-3|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.7879028320312	2	520.274564	1038.53457	-1.3648	-0.00071007	1.7256	0.00089779	0.3608	0.00018772	520.2749677334565	42.992	0.20975	39.984	39.801	40.01	-3.0074					5	3	2	0	0	0	0.027453	1	2036	2036		37.812	0	1	12859			42229	1401	34873	34896	45691	45691					0.016848487180141092
PESLIKWTP	9	Unmodified	_PESLIKWTP_					0	0	0		ENST00000604665.1_1_19:58379289-58379556:+|nuORF	ENST00000604665.1_1_19:58379289-58379556:+|nuORF	ENST00000604665.1_1_19:58379289-58379556:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	535.799560546875	2	535.797675	1069.5808	0.8576	0.0004595	1.2318	0.00066001	2.0894	0.0011195	535.7982007912447	152.96	1.1644	152.96	152.62	153.78	0					61	24	4	0	0	0	0.35694	1	17899	17899		56.434	6.8977	1	511780			42230	14265	34874	34897	45692	45692					0.04878913620086678
PESLLPRPAR	10	Unmodified	_PESLLPRPAR_					0	0	0		ENST00000342665.4_2_20:307600-308011:+|nuORF	ENST00000342665.4_2_20:307600-308011:+|nuORF	ENST00000342665.4_2_20:307600-308011:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.3499755859375	2	568.332747	1134.65094	-0.32022	-0.00018199	3.6003	0.0020462	3.2801	0.0018642	568.3346966093567	92.334	0.81049	89.791	89.517	90.327	-2.5425					38	15	3	0	0	0	0.026782	1	8050	8050		45.972	3.5761	1	218530			42231	10583	34875	34898	45693	45693					0.08900212008552444
PESQLRKLQPL	11	Unmodified	_PESQLRKLQPL_					0	0	0			REV__ENSG00000235711|ENST00000421388|ANKRD34C	REV__ENSG00000235711|ENST00000421388|ANKRD34C	MULTI-SECPEP	OvCa9_classI_Rep2	2	436.5774841308594	3	436.925988	1307.75613	0.16826	7.3518E-05	-0.12857	-5.6178E-05	0.039688	1.7341E-05	436.92518735288786	59.771	0.3575	57.001	56.725	57.082	-2.7702					10	6	2	0	0	0	0.026068	1	4380	4380		21.78	0	1	7550.5	+		42232	23406	34876	34899	45694	45694					0.11456708414334571
PESSPVRK	8	Unmodified	_PESSPVRK_					0	0	0		ENSG00000167291|ENST00000310924|TBC1D16	ENSG00000167291|ENST00000310924|TBC1D16	ENSG00000167291|ENST00000310924|TBC1D16	MULTI-SECPEP	OvCa9_classI_Rep2	2	450.7972717285156	2	450.250892	898.48723	2.3403	0.0010537	-3.4275	-0.0015432	-1.0872	-0.00048952	450.24858881391305	45.632	0.25164	42.922	42.797	43.048	-2.7097					7	4	2	0	0	0	0.028476	1	2663	2663		45.952	10.334	1	13747			42233	6777	34877	34900	45695	45695					0.033926142376685675
PESVEQLESR	10	Unmodified	_PESVEQLESR_					0	0	0		ENSG00000106266|ENST00000222990|SNX8;ENST00000480807.1_1_7:2294693-2297236:-|nuORF	ENSG00000106266|ENST00000222990|SNX8	ENSG00000106266|ENST00000222990|SNX8	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.3287353515625	2	587.290942	1172.56733	-0.22157	-0.00013012	0.32521	0.00019099	0.10364	6.0866E-05	587.2908202325111	60.579	0.5815	60.579	60.277	60.859	0					28	13	3	0	0	0	0.027028	1	5284	5284		12.812	0	1	820850			42234	2538	34878	34901	45696	45696					-0.012049889498030097
PESVEQLESR	10	Unmodified	_PESVEQLESR_					0	0	0		ENSG00000106266|ENST00000222990|SNX8;ENST00000480807.1_1_7:2294693-2297236:-|nuORF	ENSG00000106266|ENST00000222990|SNX8	ENSG00000106266|ENST00000222990|SNX8	MULTI-MATCH	OvCa9_classI_Rep2	2		2	587.290942	1172.56733	-1.7356	-0.0010193	2.3161	0.0013602	0.58049	0.00034092	587.79413406856	63.408	0.41551	60.663	60.48	60.895	-2.7444	0.042018	0.0015701	NaN	15.333	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22266			42235	2538	34878	34901							-0.012049889498030097
PESVVSCHLI	10	Unmodified	_PESVVSCHLI_					0	0	0			REV__nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1	REV__nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.7987060546875	2	542.278792	1082.54303	1.3508	0.00073253	4.3006	0.0023321	5.6515	0.0030647	542.7814158908654	146.96	0.34068	146.96	146.82	147.16	0					9	6	2	0	0	0	0.027021	1	17196	17196		29.15	0	1	13972	+		42236	17182	34879	34902	45697	45697					0.005060793629809268
PETAVADADAP	11	Unmodified	_PETAVADADAP_					0	0	0			REV__nc|ENSG00000144824|Q86SQ0-2|PHLDB2	REV__nc|ENSG00000144824|Q86SQ0-2|PHLDB2	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.7469482421875	2	528.745836	1055.47712	0.95383	0.00050433	3.2056	0.001695	4.1594	0.0021993	528.7476659855531	138.1	1.5687	136.57	136.03	137.59	-1.5284					55	34	2	0	0	0	0.58572	1	13437	13437		45.972	1.5951	1	30504	+		42237	19937	34880	34903	45698	45698					-0.048400382782574525
PETEKNYNL	9	Unmodified	_PETEKNYNL_					0	0	0		nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-3|RYR3;RYR3|p.L1996Rfs*16|1|0.04|ENSG00000198838|chr15:33696344-33696344|T/-|frameshift_variant	nc|ENSG00000198838|Q15413-2|RYR3	nc|ENSG00000198838|Q15413-2|RYR3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.8020629882812	2	554.269478	1106.5244	0.54892	0.00030425	2.5055	0.0013887	3.0544	0.001693	554.2707992166709	60.385	0.98307	56.954	56.16	57.144	-3.43					30	19	2	0	0	0	0.027462	1	4093	4093		35.618	0	1	29736			42238	8886	34881	34904	45699	45699					-0.024597590072289677
PETLGRLLI	9	Unmodified	_PETLGRLLI_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;ENSG00000103184|ENST00000251170|SEC14L5	nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000103184|ENST00000251170|SEC14L5	nc|ENSG00000129657|Q92503-3|SEC14L1	MULTI-MSMS	OvCa99_classI_Rep5	1	506.3152770996094	2	506.313492	1010.61243	1.1023	0.00055811	0.84063	0.00042562	1.9429	0.00098373	506.31378906279605	124.48	0.69326	124.48	124.24	124.93	0					31	14	3	0	0	0	0.025955	1	14368	14368		139.97	49.194	1	466960			42239	3941;2291	34882	34905	45700	45700					0.10754906374052098
PETLILTF	8	Unmodified	_PETLILTF_					0	0	0			REV__ENSG00000143624|ENST00000318967|INTS3	REV__ENSG00000143624|ENST00000318967|INTS3	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.2686462402344	2	467.268219	932.521884	0.056921	2.6597E-05	-2.6584	-0.0012422	-2.6014	-0.0012156	467.2668397699727	22.187	1.3509	20.848	20.321	21.672	-1.3386					61	30	3	0	0	0	0.73288	1	297	297		35.201	0	1	128670	+		42240	19858	34883	34906	45701	45701					0.05292437325761057
PETLLEAYIE	10	Unmodified	_PETLLEAYIE_					0	0	0		nc|ENSG00000248383|Q9H158-2|PCDHAC1;ENSG00000248383|ENST00000253807|PCDHAC1;PCDHAC1|p.V624Ffs*13|1|0.09|ENSG00000248383|chr5:140928762-140928762|G/-|frameshift_variant;PCDHAC1|p.P301L|1|0.1|ENSG00000248383|chr5:140927794-140927794|C/T|missense_variant	nc|ENSG00000248383|Q9H158-2|PCDHAC1	nc|ENSG00000248383|Q9H158-2|PCDHAC1	MULTI-MSMS	OvCa99_classI_Rep5	1	589.2994384765625	2	589.302987	1176.59142	0.8749	0.00051558	-3.4867	-0.0020547	-2.6118	-0.0015392	589.3000196615104	153.46	1.2254	153.46	152.9	154.12	0					57	24	4	0	0	0	0.66721	1	17971	17971		34.173	2.6427	1	263120			42241	9406	34884	34907	45702	45702					0.010188514838318952
PETLPVINK	9	Unmodified	_PETLPVINK_					0	0	0		ENSG00000135999|ENST00000258484|EPC2;EPC2|p.S751Lfs*15|1|0.05|ENSG00000135999|chr2:148784899-148784900|-/GCTGGAGCCAAATATGGTAT|frameshift_variant	ENSG00000135999|ENST00000258484|EPC2	ENSG00000135999|ENST00000258484|EPC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.827880859375	2	505.797675	1009.5808	-0.44905	-0.00022713	-0.28725	-0.00014529	-0.73631	-0.00037242	505.79725495459115	77.93	0.96806	75.114	74.681	75.649	-2.8165					36	14	3	0	0	0	0.027462	1	6313	6313		44.117	0	1	204450			42242	4444	34885	34908	45703	45703					0.07638913620087351
PETLSSVAILT	11	Unmodified	_PETLSSVAILT_					0	0	0		ENSG00000188039|ENST00000524140|NWD1;ENST00000438489.6_1_19:16849058-16926137:+|nuORF;nc|ENSG00000188039|Q149M9|NWD1	ENSG00000188039|ENST00000524140|NWD1	ENSG00000188039|ENST00000524140|NWD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	566.816162109375	2	565.818804	1129.62306	1.8035	0.0010204	-0.38884	-0.00022001	1.4146	0.00080042	565.8184513296499	110.28	1.1046	108.67	108.28	109.38	-1.6011					34	20	2	0	0	0	0.025257	1	10162	10162		52.937	0	1	116520			42243	8448	34886	34909	45704	45704					0.0634284423781537
PETNECFIA	9	Unmodified	_PETNECFIA_					0	0	0			REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14	REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.2724609375	2	512.226225	1022.4379	1.938	0.00099268	0.40123	0.00020552	2.3392	0.0011982	512.2264598031909	128.61	0.28136	128.61	128.47	128.75	0					9	5	2	0	0	0	0.027462	1	14893	14893		35.618	13.658	1	32584	+		42244	19274	34887	34910	45705	45705					-0.07242461833459402
PETNLFIK	8	Unmodified	_PETNLFIK_					0	0	0			REV__tr|A0A553SMF7|A0A553SMF7_NIACIBeta-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_22515PE=3SV=1	REV__tr|A0A553SMF7|A0A553SMF7_NIACIBeta-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_22515PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.3149108886719	2	481.271293	960.528032	2.6633	0.0012818	-4.3901	-0.0021128	-1.7267	-0.00083102	481.2692251356093	75.388	0.7093	75.388	75.128	75.837	0					27	17	3	0	0	0	0.028476	1	7538	7538		31.955	0	1	723730	+		42245	30324	34888	34911	45706	45706					0.04618955557282334
PETSEPALQRL	11	Unmodified	_PETSEPALQRL_					0	0	0		ENSG00000089558|ENST00000264661|KCNH4	ENSG00000089558|ENST00000264661|KCNH4	ENSG00000089558|ENST00000264661|KCNH4	MULTI-MSMS	OvCa9_classI_Rep2	2	620.8326416015625	2	620.830234	1239.64592	-1.2546	-0.00077886	4.0231	0.0024976	2.7685	0.0017188	620.8326870345176	98.983	3.0275	98.09	97.757	100.78	-0.89305					162	60	6	0	0	0	0.41398	1	9048	9048		60.118	1.8883	1	2033000			42246	1823	34889	34912	45707	45707					0.03567863355283407
PETSGEKYL	9	Unmodified	_PETSGEKYL_					0	0	0			REV__ENST00000444199.1_1_19:55208384-55209490:+|nuORF	REV__ENST00000444199.1_1_19:55208384-55209490:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.2540893554688	2	512.253297	1022.49204	-0.66625	-0.00034129	0.61007	0.00031251	-0.056178	-2.8777E-05	512.253528475125	87.1	2.3549	84.473	83.957	86.312	-2.6269					166	46	5	0	0	0	0.51865	1	7364	7364		40.778	5.1599	1	2034900	+		42247	25874	34890	34913	45708	45708					-0.018305464102354563
PETVGAIISTI	11	Unmodified	_PETVGAIISTI_					0	0	0			REV__tr|A0A7D7A4U7|A0A7D7A4U7_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_03375PE=4SV=1	REV__tr|A0A7D7A4U7|A0A7D7A4U7_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_03375PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	550.8169555664062	2	550.813522	1099.61249	2.4269	0.0013368	3.2912	0.0018128	5.7181	0.0031496	550.8153288548965	89.255	1.2638	89.255	88.922	90.186	0					58	30	2	0	0	0	0.65947	1	9497	9497		39.253	0.23134	1	20000000	+		42248	32618	34891	34914	45709	45709					0.06666861583403261
PEVALVAI	8	Unmodified	_PEVALVAI_					0	0	0		tr|A0A7D6ZI26|A0A7D6ZI26_9CLOTUvrABCsystemproteinBOS=ClostridiumintestinaleOX=36845GN=uvrBPE=3SV=1	tr|A0A7D6ZI26|A0A7D6ZI26_9CLOTUvrABCsystemproteinBOS=ClostridiumintestinaleOX=36845GN=uvrBPE=3SV=1	tr|A0A7D6ZI26|A0A7D6ZI26_9CLOTUvrABCsystemproteinBOS=ClostridiumintestinaleOX=36845GN=uvrBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	406.2486267089844	2	406.249829	810.485105	0.12737	5.1745E-05	-3.126	-0.00127	-2.9987	-0.0012182	406.2484453732125	140.19	2.0181	139.96	139.4	141.42	-0.22697					109	40	4	0	0	0	0.74361	1	13983	13983		29.842	1.5873	1	304300			42249	35602	34892	34915	45710	45710					0.07228185499855044
PEVAPRRI	8	Unmodified	_PEVAPRRI_					0	0	0			REV__ENST00000552885.2_1_12:80328793-80329330:+|nuORF	REV__ENST00000552885.2_1_12:80328793-80329330:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.2782897949219	2	469.282526	936.550499	-0.15817	-7.4226E-05	1.0133	0.00047552	0.85511	0.00040129	469.2829081633491	35.762	0.64447	35.762	35.52	36.164	0					21	13	2	0	0	0	0.028476	1	1856	1856		12.959	0	1	86947	+		42250	27503	34893	34916	45711	45711					0.07968599745561278
PEVDDYLEY	9	Unmodified	_PEVDDYLEY_					0	0	0			REV__ENSG00000133246|ENST00000423345|PRAM1	REV__ENSG00000133246|ENST00000423345|PRAM1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	572.28271484375	2	571.748044	1141.48154	-1.2295	-0.00070299	-4.3609	-0.0024933	-5.5904	-0.0031963	571.7453476454341	100.47	0.9246	98.199	97.775	98.7	-2.2665					38	17	3	0	0	0	0.027462	1	8991	8991		31.955	8.4322	1	71494	+		42251	19137	34894	34917	45712	45712					-0.08354573855331182
PEVERRWWRRR	11	Unmodified	_PEVERRWWRRR_					0	0	0		ENST00000284971.7_1_21:27102007-27107256:-|nuORF	ENST00000284971.7_1_21:27102007-27107256:-|nuORF	ENST00000284971.7_1_21:27102007-27107256:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	543.3250122070312	3	542.634313	1624.88111	-0.32283	-0.00017518	-1.151	-0.0006246	-1.4739	-0.00079978	542.6336011501695	64.795	0.88371	62.07	61.758	62.641	-2.7246					37	16	4	0	0	0	0.026174	1	4960	4960		8.4073	0	1	76391			42252	10072	34895	34918	45713	45713					0.09366438394044962
PEVERRWWRRR	11	Unmodified	_PEVERRWWRRR_					0	0	0		ENST00000284971.7_1_21:27102007-27107256:-|nuORF	ENST00000284971.7_1_21:27102007-27107256:-|nuORF	ENST00000284971.7_1_21:27102007-27107256:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.3258666992188	3	542.634313	1624.88111	-1.1213	-0.00060847	-1.1377	-0.00061738	-2.2591	-0.0012258	542.6336948033617	65.471	0.97072	61.986	61.694	62.665	-3.4854					50	19	4	0	0	0	0.026277	1	4743	4743		8.7993	3.3864	1	317040			42253	10072	34895	34918	45714	45714					0.09366438394044962
PEVFREIFGM	10	Unmodified	_PEVFREIFGM_					0	0	0		nc|ENSG00000099204|O14639-4|ABLIM1;nc|ENSG00000099204|O14639-3|ABLIM1;nc|ENSG00000099204|O14639-5|ABLIM1;nc|ENSG00000099204|O14639-2|ABLIM1;nc|ENSG00000099204|O14639-6|ABLIM1;ENSG00000099204|ENST00000533213|ABLIM1	nc|ENSG00000099204|O14639-4|ABLIM1	nc|ENSG00000099204|O14639-4|ABLIM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	409.53765869140625	3	408.874236	1223.60088	0.83756	0.00034246	-1.2028	-0.00049178	-0.36521	-0.00014932	409.2078262420395	50.997	0.90933	50.997	50.465	51.374	0					25	20	2	0	0	0	0.026688	1	3863	3863		45.022	30.936	1	203160			42254	1960	34896	34919	45715	45715					-0.0019765871161325776
PEVHSRCAV	9	Unmodified	_PEVHSRCAV_					0	0	0		nc|ENSG00000151687|Q7Z5J8-3|ANKAR;nc|ENSG00000151687|Q7Z5J8-2|ANKAR;ENSG00000151687|ENST00000684021|ANKAR	nc|ENSG00000151687|Q7Z5J8-3|ANKAR	nc|ENSG00000151687|Q7Z5J8-3|ANKAR	MULTI-SECPEP	OvCa9_classI_Rep2	2	499.79296875	2	499.247826	996.481099	-0.13233	-6.6066E-05	0.47861	0.00023894	0.34628	0.00017288	499.24792539484525	107.65	0.8244	107.34	107.07	107.89	-0.30836					35	16	3	0	0	0	0.027462	1	10121	10121		24.203	7.7296	1	38894			42255	5575	34897	34920	45716	45716					-0.01728227265505211
PEVIPQVSLVP	11	Unmodified	_PEVIPQVSLVP_					0	0	0		nc|ENSG00000165282|Q8TEQ8-2|PIGO;ENSG00000165282|ENST00000378617|PIGO;PIGO|p.F580Cfs*44|1|0.03|ENSG00000165282|chr9:35092148-35092149|-/GC|frameshift_variant	nc|ENSG00000165282|Q8TEQ8-2|PIGO	nc|ENSG00000165282|Q8TEQ8-2|PIGO	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3426513671875	2	589.344989	1176.67542	-5.1334	-0.0030254	1.6192	0.00095427	-3.5142	-0.0020711	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.7046	1	12426	12426		28.081	4.5588	1	589610			42256	6546	34898	34921	45717	45717					0.09415427371413898
PEVKQVLHI	9	Unmodified	_PEVKQVLHI_					0	0	0		ENST00000469908.5_2_16:2429513-2445843:+|nuORF	ENST00000469908.5_2_16:2429513-2445843:+|nuORF	ENST00000469908.5_2_16:2429513-2445843:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8189086914062	2	531.818941	1061.62333	0.089047	4.7357E-05	-3.7428	-0.0019905	-3.6538	-0.0019431	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.62352	1	13520	13520		29.15	7.1897	1	263230			42257	12353	34899	34922	45718	45718					0.09498308748334239
PEVKRALL	8	Unmodified	_PEVKRALL_					0	0	0			REV__nc|ENSG00000108443|P23443-4|RPS6KB1	REV__nc|ENSG00000108443|P23443-4|RPS6KB1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.2536926269531	2	463.295102	924.575651	-0.26353	-0.00012209	0.31642	0.00014659	0.052887	2.4502E-05	463.2950330989984	59.367	1.231	55.975	55.705	56.936	-3.392					48	24	3	0	0	0	0.028476	1	3992	3992		25.45	0.94616	1	316470	+		42258	17888	34900	34923	45719	45719					0.11034654548143408
PEVKRALL	8	Unmodified	_PEVKRALL_					0	0	0			REV__nc|ENSG00000108443|P23443-4|RPS6KB1	REV__nc|ENSG00000108443|P23443-4|RPS6KB1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	463.295102	924.575651	-0.50833	-0.00023551	0.6222	0.00028826	0.11387	5.2754E-05	463.2951793482547	58.643	1.3824	55.863	55.385	56.767	-2.7801	-0.055929	0.00010384	NaN	24.203	57	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162680	+		42259	17888	34900	34923							0.11034654548143408
PEVLFTAGLP	10	Unmodified	_PEVLFTAGLP_					0	0	0		ENST00000457167.8_1_17:40169403-40169499:-|nuORF	ENST00000457167.8_1_17:40169403-40169499:-|nuORF	ENST00000457167.8_1_17:40169403-40169499:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.6443481445312	2	522.292225	1042.5699	1.3106	0.00068451	-3.9134	-0.002044	-2.6029	-0.0013595	522.2901356064469	126.4	0.46501	126.4	126.18	126.65	0					15	9	2	0	0	0	0.026665	1	14614	14614		42.396	16.946	1	40808			42260	12119	34901	34924	45720	45720					0.050315112458065414
PEVQSVAE	8	Unmodified	_PEVQSVAE_					0	0	0		ENST00000486374.5_1_10:24873343-24884978:-|nuORF;ENSG00000107863|ENST00000396432|ARHGAP21	REV__ENSG00000160294|ENST00000291688|MCM3AP;ENSG00000107863|ENST00000396432|ARHGAP21	REV__ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MSMS	OvCa99_classI_Rep5	1	429.71356201171875	2	429.713808	857.413062	1.8715	0.00080421	-3.2412	-0.0013928	-1.3697	-0.0005886	429.7123767236907	116.93	0.86729	116.93	116.64	117.51	0					39	18	4	0	0	0	0.50747	1	13408	13408		76.774	5.4784	1	636590			42261	20653;2622	34902	34925	45721	45721					-0.021347736445136434
PEVSDGQITVK	11	Unmodified	_PEVSDGQITVK_					0	0	0		ENST00000529480.1_1_11:57457792-57467500:+|nuORF;nc|ENSG00000156599|Q9C0B5-2|ZDHHC5;ENSG00000156599|ENST00000287169|ZDHHC5	ENST00000529480.1_1_11:57457792-57467500:+|nuORF	ENST00000529480.1_1_11:57457792-57467500:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.8107299804688	2	586.81151	1171.60847	0.021445	1.2584E-05	3.9705	0.0023299	3.9919	0.0023425	586.8139133863023	57.478	0.42654	57.478	57.264	57.691	0					16	9	2	0	0	0	0.025749	1	4834	4834		61.691	2.9093	1	329950			42262	5850	34903	34926	45722	45722					0.02952772089656719
PEVSRKKV	8	Unmodified	_PEVSRKKV_					0	0	0		ENST00000437071.5_1_22:27068919-27134146:+|nuORF	ENST00000437071.5_1_22:27068919-27134146:+|nuORF	ENST00000437071.5_1_22:27068919-27134146:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.7311096191406	2	471.790184	941.565815	-0.23492	-0.00011083	-0.046893	-2.2123E-05	-0.28181	-0.00013295	471.7900620312249	55.211	1.2776	51.93	50.996	52.273	-3.2812					42	24	2	0	0	0	0.028476	1	3441	3441		47.916	0	1	39272			42263	11884	34904	34927	45723	45723					0.09269466542764349
PEVVESKLKLP	11	Unmodified	_PEVVESKLKLP_					0	0	0		nc|ENSG00000105227|Q9BXM0-3|PRX;ENST00000291825.11_2_19:40899875-40904000:-|nuORF;ENSG00000105227|ENST00000324001|PRX	nc|ENSG00000105227|Q9BXM0-3|PRX	nc|ENSG00000105227|Q9BXM0-3|PRX	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8701782226562	2	619.871371	1237.72819	-3.1194	-0.0019336	-0.12263	-7.6013E-05	-3.242	-0.0020096	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.70865	1	15200	15200		26.693	3.6504	1	806750			42264	2430	34905	34928	45724	45724					0.11883385434225602
PEVVIGVSI	9	Unmodified	_PEVVIGVSI_					0	0	0		L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|403|3|anti-sense	L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|403|3|anti-sense	L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|403|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	456.7723388671875	2	456.773668	911.532783	-0.55209	-0.00025218	-2.5379	-0.0011592	-3.09	-0.0014114	456.77237766888294	142.31	1.8774	142.08	141.37	143.25	-0.22697					97	37	4	0	0	0	0.61208	1	14320	14320		30.504	3.7075	1	225920			42265	14696	34906	34929	45725	45725					0.0734783970007129
PEWAAAASEVK	11	Unmodified	_PEWAAAASEVK_					0	0	0		nc|ENSG00000143870|Q15084-3|PDIA6;ENSG00000143870|ENST00000272227|PDIA6;nc|ENSG00000143870|Q15084-4|PDIA6;nc|ENSG00000143870|Q15084-5|PDIA6;nc|ENSG00000143870|Q15084-2|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.7916870117188	2	579.793121	1157.57169	-1.7841	-0.0010344	1.7315	0.0010039	-0.052651	-3.0527E-05	579.7939864226607	146.06	1.0909	144.62	144.29	145.38	-1.4357					53	20	4	0	0	0	0.69455	1	14364	14364		31.53	1.0262	1	241170			42266	5103	34907	34930	45726	45726					-0.0007947973626869498
PEWRLGDL	8	Unmodified	_PEWRLGDL_					0	0	0		ENST00000420343.1_1_5:156569472-156569760:-|nuORF	ENST00000420343.1_1_5:156569472-156569760:-|nuORF	ENST00000420343.1_1_5:156569472-156569760:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.28253173828125	2	493.258717	984.50288	-0.50489	-0.00024904	3.0851	0.0015217	2.5802	0.0012727	493.26026013747213	48.873	0.99712	48.873	48.332	49.33	0					32	22	2	0	0	0	0.028476	1	3601	3601		53.351	3.3269	1	299740			42267	11669	34908	34931	45727	45727					0.010009007546955218
PEYFLLEQVQ	10	Unmodified	_PEYFLLEQVQ_					0	0	0			REV__ENSG00000119411|ENST00000374183|BSPRY	REV__ENSG00000119411|ENST00000374183|BSPRY	MULTI-SECPEP	OvCa99_classI_Rep5	1	423.2585754394531	3	422.551928	1264.63395	-0.40855	-0.00017264	-1.7563	-0.00074212	-2.1648	-0.00091476	422.8855509310351	39.994	0.27021	39.994	39.883	40.154	0					10	5	2	0	0	0	0.026596	1	2383	2383		51.528	1.4942	1	45378	+		42268	18441	34909	34932	45728	45728					0.012222466120874742
PEYGEVIQL	9	Unmodified	_PEYGEVIQL_					0	0	0		ENST00000488260.1_1_3:40351432-40353086:+|nuORF;ENSG00000173812|ENST00000469257|EIF1;ENSG00000114784|ENST00000232905|EIF1B;ENST00000487533.1_1_2:9411463-9411580:-|nuORF;ENST00000462917.1_1_17:39846204-39847075:+|nuORF;ENST00000310837.8_1_17:39845180-39847075:+|nuORF	ENST00000488260.1_1_3:40351432-40353086:+|nuORF	ENST00000488260.1_1_3:40351432-40353086:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	524.2718505859375	2	524.27149	1046.52843	-1.2665	-0.00066397	1.0965	0.00057489	-0.16992	-8.9084E-05	524.2719353297791	119.84	3.5537	119.67	119.05	122.61	-0.17138					188	71	5	0	0	0	0.053172	5	11535	11517;11523;11529;11535;11573		116.9	8.8161	1	902400			42269	3041	34910	34933	45729;45730;45731;45732;45733	45732					0.007023304865015234
PEYGEVIQL	9	Unmodified	_PEYGEVIQL_					0	0	0		ENST00000488260.1_1_3:40351432-40353086:+|nuORF;ENSG00000173812|ENST00000469257|EIF1;ENSG00000114784|ENST00000232905|EIF1B;ENST00000487533.1_1_2:9411463-9411580:-|nuORF;ENST00000462917.1_1_17:39846204-39847075:+|nuORF;ENST00000310837.8_1_17:39845180-39847075:+|nuORF	ENST00000488260.1_1_3:40351432-40353086:+|nuORF	ENST00000488260.1_1_3:40351432-40353086:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	524.2711181640625	2	524.27149	1046.52843	0.85689	0.00044924	-1.2618	-0.00066151	-0.40488	-0.00021227	524.2706948277186	120.46	3.5918	119.43	118.68	122.27	-1.0271					167	69	5	0	0	0	0.062324	2	9184	9178;9184		111.65	3.5608	1	1392700			42270	3041	34910	34933	45734;45735	45735					0.007023304865015234
PEYGEVIQL	9	Unmodified	_PEYGEVIQL_					0	0	0		ENST00000488260.1_1_3:40351432-40353086:+|nuORF;ENSG00000173812|ENST00000469257|EIF1;ENSG00000114784|ENST00000232905|EIF1B;ENST00000487533.1_1_2:9411463-9411580:-|nuORF;ENST00000462917.1_1_17:39846204-39847075:+|nuORF;ENST00000310837.8_1_17:39845180-39847075:+|nuORF	ENST00000488260.1_1_3:40351432-40353086:+|nuORF	ENST00000488260.1_1_3:40351432-40353086:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.2717895507812	2	524.27149	1046.52843	-1.2154	-0.00063721	0.87946	0.00046108	-0.33595	-0.00017613	524.271834383769	120.77	3.305	119.42	118.72	122.02	-1.3479					160	64	5	0	0	0	0.062324	4	11360	11348;11360;11396;11433		111.65	5.2331	1	1764900			42271	3041	34910	34933	45736;45737;45738;45739	45737					0.007023304865015234
PEYKLKEYE	9	Unmodified	_PEYKLKEYE_					0	0	0		tr|A0A7D6ZUP7|A0A7D6ZUP7_9CLOTFamily1glycosylhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12770PE=3SV=1	tr|A0A7D6ZUP7|A0A7D6ZUP7_9CLOTFamily1glycosylhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12770PE=3SV=1	tr|A0A7D6ZUP7|A0A7D6ZUP7_9CLOTFamily1glycosylhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12770PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	599.7970581054688	2	599.803154	1197.59175	2.0961	0.0012573	-1.8355	-0.0011009	0.26065	0.00015634	599.8017450360468	128.55	0.98083	128.55	127.95	128.93	0					59	20	4	0	0	0	0.59259	1	14899	14899		32.812	0	1	404880			42272	35780	34911	34934	45740	45740					0.0008627120371329511
PFAFVSPRN	9	Unmodified	_PFAFVSPRN_					0	0	0		ENST00000600988.1_1_19:36249429-36249696:+|nuORF	ENST00000600988.1_1_19:36249429-36249696:+|nuORF	ENST00000600988.1_1_19:36249429-36249696:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	517.7718505859375	2	517.774534	1033.53451	-0.11286	-5.8436E-05	-4.4593	-0.0023089	-4.5722	-0.0023674	517.7720793355885	63.006	0.36308	63.006	62.816	63.179	0					23	8	3	0	0	0	0.36502	1	5646	5646		55.504	2.5675	1	1766600			42273	14220	34912	34935	45741	45741					0.019088935086756464
PFAFVSPRN	9	Unmodified	_PFAFVSPRN_					0	0	0		ENST00000600988.1_1_19:36249429-36249696:+|nuORF	ENST00000600988.1_1_19:36249429-36249696:+|nuORF	ENST00000600988.1_1_19:36249429-36249696:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	517.774534	1033.53451	1.4005	0.00072516	-10.58	-0.0054779	-9.1791	-0.0047527	517.7675373908062	65.699	1.0482	63.003	62.469	63.517	-2.6958	0.062886	-0.0048471	NaN	55.504	61	20	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90327			42274	14220	34912	34935							0.019088935086756464
PFAFVSPRN	9	Unmodified	_PFAFVSPRN_					0	0	0		ENST00000600988.1_1_19:36249429-36249696:+|nuORF	ENST00000600988.1_1_19:36249429-36249696:+|nuORF	ENST00000600988.1_1_19:36249429-36249696:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	517.774534	1033.53451	-0.98652	-0.0005108	-8.7346	-0.0045225	-9.7211	-0.0050333	517.7689097845185	66.302	1.3683	62.812	62.272	63.64	-3.4902	-0.12846	-0.0029364	NaN	55.504	91	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	516840			42275	14220	34912	34935							0.019088935086756464
PFAGGGGG	8	Unmodified	_PFAGGGGG_					0	0	0			REV__SRC|p.A27G|1|0.32|ENSG00000197122|chr20:37384233-37384233|C/G|missense_variant	REV__SRC|p.A27G|1|0.32|ENSG00000197122|chr20:37384233-37384233|C/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	619.3576049804688	1	619.283451	618.276175	0.41665	0.00025802	1.699	0.0010522	2.1157	0.0013102	619.284617577472	105.59	0.4343	105.59	105.4	105.83	0					13	9	2	0	0	0	0.028476	1	11855	11855		1.619	0	1	255390	+		42276	29450	34913	34936	45742	45742					-0.0482321801357557
PFAGPKSI	8	Unmodified	_PFAGPKSI_					0	0	0			REV__tr|A0A553SG00|A0A553SG00_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09845PE=4SV=1	REV__tr|A0A553SG00|A0A553SG00_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09845PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	409.60772705078125	2	408.734346	815.454139	0.28668	0.00011718	0.022002	8.9931E-06	0.30869	0.00012617	408.73421962879183	103.44	1.0372	102.75	102.53	103.56	-0.68459					53	20	4	0	0	0	0.028476	1	9633	9633		25.45	0	1	117940	+		42277	29641	34914	34937	45743	45743					0.039030321856103
PFAGPKSI	8	Unmodified	_PFAGPKSI_					0	0	0			REV__tr|A0A553SG00|A0A553SG00_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09845PE=4SV=1	REV__tr|A0A553SG00|A0A553SG00_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09845PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	408.734346	815.454139	1.2631	0.00051627	-1.1076	-0.00045273	0.15545	6.354E-05	408.73376015231906	104.31	1.196	102.88	102.55	103.75	-1.4347	-0.0097629	-0.00052358	NaN	25.45	48	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141460	+		42278	29641	34914	34937							0.039030321856103
PFAGPKSI	8	Unmodified	_PFAGPKSI_					0	0	0			REV__tr|A0A553SG00|A0A553SG00_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09845PE=4SV=1	REV__tr|A0A553SG00|A0A553SG00_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09845PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	408.734346	815.454139	0.8193	0.00033487	-0.46926	-0.0001918	0.35003	0.00014307	408.73395737923346	105.05	1.2585	103.03	102.74	104	-2.0161	0.14563	-1.7141E-06	NaN	25.45	62	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123240	+		42279	29641	34914	34937							0.039030321856103
PFAISKLSL	9	Unmodified	_PFAISKLSL_					0	0	0			REV__nc|ENSG00000173193|Q460N5-3|PARP14	REV__nc|ENSG00000173193|Q460N5-3|PARP14	MULTI-MSMS	OvCa99_classI_Rep5	1	488.2925109863281	2	488.29731	974.580068	0.059658	2.9131E-05	0.61241	0.00029904	0.67207	0.00032817	488.297452312238	105.47	0.61336	105.47	105.13	105.75	0					33	13	3	0	0	0	0.026923	1	11858	11858		138.83	5.0129	1	927750	+		42280	21755	34915	34938	45744	45744					0.0917611897103825
PFAPAAGAHG	10	Unmodified	_PFAPAAGAHG_					0	0	0			REV__ENSG00000074047|ENST00000361492|GLI2	REV__ENSG00000074047|ENST00000361492|GLI2	MULTI-SECPEP	OvCa99_classI_Rep5	1	448.2540283203125	2	448.224677	894.434801	2.706	0.0012129	-0.76387	-0.00034239	1.9421	0.0008705	448.22425289728227	77.122	0.78075	77.122	76.6	77.381	0					26	18	2	0	0	0	0.026672	1	7795	7795		54.765	38.292	1	183450	+		42281	16945	34916	34939	45745	45745					-0.0166392410529852
PFAVVGGEKIV	11	Unmodified	_PFAVVGGEKIV_					0	0	0			REV__tr|A0A7D6ZFV7|A0A7D6ZFV7_9CLOTThreonylcarbamoyl-AMPsynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19555PE=3SV=1	REV__tr|A0A7D6ZFV7|A0A7D6ZFV7_9CLOTThreonylcarbamoyl-AMPsynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19555PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	558.3233642578125	2	558.326599	1114.63865	-6.6197	-0.0036959	3.6732	0.0020508	-2.9465	-0.0016451	558.3288780222969	157.48	0.96848	156.31	155.65	156.62	-1.1707					33	22	2	0	0	0	0.72473	1	13582	13582		19.104	0.77911	1	23182	+		42282	31983	34917	34940	45746	45746					0.08591175545507213
PFCVILTPV	9	Unmodified	_PFCVILTPV_					0	0	0		ENST00000461999.1_1_11:118967710-118968007:-|nuORF	ENST00000461999.1_1_11:118967710-118968007:-|nuORF	ENST00000461999.1_1_11:118967710-118968007:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	494.7833557128906	2	494.780439	987.546325	1.9563	0.00096796	2.9377	0.0014535	4.894	0.0024215	494.7817770546899	106.6	1.3315	106.6	106.27	107.6	0					64	30	4	0	0	0	0.55588	1	12019	12019		37.159	8.0096	1	3981500			42283	12192	34918	34941	45747	45747					0.05205374207639579
PFDACGLIVAK	11	Unmodified	_PFDACGLIVAK_					0	0	0		UGT1A8|p.V258Cfs*31|1|0.22|ENSG00000242366|chr2:233618475-233618476|-/T|frameshift_variant;nc|ENSG00000244122|Q9HAW7-2|UGT1A7;nc|ENSG00000242366|Q9HAW9-2|UGT1A8;ENSG00000244122|ENST00000373426|UGT1A7;ENSG00000242366|ENST00000373450|UGT1A8	UGT1A8|p.V258Cfs*31|1|0.22|ENSG00000242366|chr2:233618475-233618476|-/T|frameshift_variant	UGT1A8|p.V258Cfs*31|1|0.22|ENSG00000242366|chr2:233618475-233618476|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.30712890625	2	567.30481	1132.59507	0.54664	0.00031011	2.0378	0.0011561	2.5845	0.0014662	567.3059047252544	63.844	1.3078	60.369	60.061	61.368	-3.475					75	26	4	0	0	0	0.58572	1	4514	4514		45.972	5.3996	1	1323600			42284	9364	34919	34942	45748	45748					0.03407242776711428
PFDKNYVGNS	10	Unmodified	_PFDKNYVGNS_					0	0	0		sp|P16790|VPAP_HCMVADNApolymeraseprocessivityfactorOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL44PE=1SV=1;sp|F5HC97|VPAP_HCMVMDNApolymeraseprocessivityfactorOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL44PE=3SV=1	sp|P16790|VPAP_HCMVADNApolymeraseprocessivityfactorOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL44PE=1SV=1	sp|P16790|VPAP_HCMVADNApolymeraseprocessivityfactorOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL44PE=1SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	570.8233032226562	2	570.769645	1139.52474	-0.71912	-0.00041045	3.0925	0.0017651	2.3734	0.0013546	570.7714453610331	81.425	0.82931	78.715	78.347	79.176	-2.7106					26	16	2	0	0	0	0.02676	1	6710	6710		33.922	1.1092	1	115810			42285	32856	34920	34943	45749	45749					-0.03944339287386356
PFDLWTPPV	9	Unmodified	_PFDLWTPPV_					0	0	0		ENST00000427522.6_1_20:62190209-62190602:-|nuORF	ENST00000427522.6_1_20:62190209-62190602:-|nuORF	ENST00000427522.6_1_20:62190209-62190602:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	536.279052734375	2	536.279118	1070.54368	1.1095	0.00059503	-2.2944	-0.0012304	-1.1848	-0.0006354	536.2778823916158	142.93	0.58087	142.93	142.69	143.27	0					28	11	3	0	0	0	0.40667	1	16720	16720		51.335	12.314	1	198420			42286	11756	34921	34944	45750	45750					0.011232420743226612
PFELMDKLD	9	Unmodified	_PFELMDKLD_					0	0	0			REV__ENST00000599335.5_1_19:39959399-39965382:+|nuORF	REV__ENST00000599335.5_1_19:39959399-39965382:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.2853393554688	2	554.273175	1106.5318	0.46247	0.00025634	1.3685	0.00075853	1.831	0.0010149	554.2730677914187	109.81	1.8266	108.2	107.45	109.28	-1.6011					62	34	3	0	0	0	0.027343	1	10156	10156		90.777	19.481	1	41247	+		42287	22805	34922	34945	45751	45751					-0.017207427311632273
PFEQISIGAP	10	Unmodified	_PFEQISIGAP_					0	0	0			REV__nc|ENSG00000103723|Q13367-3|AP3B2	REV__nc|ENSG00000103723|Q13367-3|AP3B2	MULTI-MSMS	OvCa9_classI_Rep2	2	529.7822875976562	2	529.779482	1057.54441	-1.6604	-0.00087967	1.2234	0.00064812	-0.43706	-0.00023155	529.7799189732325	100.61	1.4871	99.782	99.509	101	-0.83051					46	29	3	0	0	0	0.22511	1	9211	9211		90.601	24.172	1	159130	+		42288	17632	34923	34946	45752	45752					0.017940367233904908
PFEQISIGAP	10	Unmodified	_PFEQISIGAP_					0	0	0			REV__nc|ENSG00000103723|Q13367-3|AP3B2	REV__nc|ENSG00000103723|Q13367-3|AP3B2	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.7843627929688	2	529.779482	1057.54441	-1.0271	-0.00054413	1.2626	0.00066889	0.2355	0.00012477	529.7797141659051	101.97	1.5172	99.775	99.471	100.99	-2.1994					51	28	2	0	0	0	0.5675	1	9172	9172		45.972	1.8554	1	207010	+		42289	17632	34923	34946	45753	45753					0.017940367233904908
PFFPSIQEA	9	Unmodified	_PFFPSIQEA_					0	0	0			REV__TEX10|p.E856Gfs*24|1|0.03|ENSG00000136891|chr9:100303741-100303742|-/TC|frameshift_variant	REV__TEX10|p.E856Gfs*24|1|0.03|ENSG00000136891|chr9:100303741-100303742|-/TC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	518.2630004882812	2	518.260925	1034.5073	1.3847	0.00071764	1.7811	0.00092307	3.1658	0.0016407	518.2616936757189	128.68	1.5825	128.45	128.13	129.71	-0.22696					76	31	3	0	0	0	0.56889	1	12604	12604		35.618	1.4457	1	418450	+		42290	19420	34924	34947	45754	45754					-0.00857634822386899
PFGAAVTIVE	10	Unmodified	_PFGAAVTIVE_					0	0	0			REV__tr|A0A7D6ZP50|A0A7D6ZP50_9CLOTLipopolysaccharidebiosynthesisproteinRfbHOS=ClostridiumintestinaleOX=36845GN=rfbHPE=3SV=1	REV__tr|A0A7D6ZP50|A0A7D6ZP50_9CLOTLipopolysaccharidebiosynthesisproteinRfbHOS=ClostridiumintestinaleOX=36845GN=rfbHPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	502.27435302734375	2	502.276575	1002.5386	-0.54437	-0.00027343	-4.2497	-0.0021345	-4.7941	-0.002408	502.274328790532	78.652	2.173	76.912	76.301	78.474	-1.7398					94	42	4	0	0	0	0.45225	1	6582	6582		60.972	4.5381	1	299450	+		42291	32129	34925	34948	45755	45755					0.03742938211712499
PFGFGPRG	8	Unmodified	_PFGFGPRG_					0	0	0		ENSG00000137869|ENST00000396402|CYP19A1	ENSG00000137869|ENST00000396402|CYP19A1	ENSG00000137869|ENST00000396402|CYP19A1	MULTI-MSMS	OvCa99_classI_Rep5	1	417.716796875	2	417.716488	833.418422	1.3381	0.00055895	0.98394	0.00041101	2.322	0.00096995	417.7167388697413	158.03	2.1569	158.03	157.65	159.81	0					84	44	3	0	0	0	0.72922	1	18491	18491		37.028	0	1	192830			42292	4632	34926	34949	45756	45756					-0.004950052713866171
PFGGGRFP	8	Unmodified	_PFGGGRFP_					0	0	0		ENST00000556933.1_1_14:65067322-65068336:-|nuORF	ENST00000556933.1_1_14:65067322-65068336:-|nuORF	ENST00000556933.1_1_14:65067322-65068336:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	417.7174377441406	2	417.716488	833.418422	1.5603	0.00065178	0.56199	0.00023475	2.1223	0.00088653	417.7165732909185	155.81	4.0147	155.81	153.69	157.7	0					162	79	3	0	0	0	0.65582	1	18453	18453		52.299	15.271	1	421790			42293	13676	34927	34950	45757	45757					-0.004950052713979858
PFGGGRFP	8	Unmodified	_PFGGGRFP_					0	0	0		ENST00000556933.1_1_14:65067322-65068336:-|nuORF	ENST00000556933.1_1_14:65067322-65068336:-|nuORF	ENST00000556933.1_1_14:65067322-65068336:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	417.7176513671875	2	417.716488	833.418422	1.3381	0.00055895	0.98394	0.00041101	2.322	0.00096995	417.7167388697413	158.03	2.1569	158.03	157.65	159.81	0					84	44	3	0	0	0	0.73626	1	18533	18533		33.516	0.022601	1	192830			42294	13676	34927	34950	45758	45758					-0.004950052713979858
PFGGRLLVL	9	Unmodified	_PFGGRLLVL_					0	0	0		nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENSG00000059122|ENST00000253928|FLYWCH1;nc|ENSG00000059122|Q4VC44-3|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	MULTI-MSMS	OvCa9_classI_Rep2	2	486.3058776855469	2	486.30547	970.596387	-1.0237	-0.00049782	0.68907	0.0003351	-0.3346	-0.00016272	486.3057082440577	120.4	1.6293	120.23	119.94	121.57	-0.17138					88	32	4	0	0	0	0.55588	1	11607	11607		37.159	1.9584	1	594410			42295	1251	34928	34951	45759	45759					0.10991244927799926
PFGGRLLVL	9	Unmodified	_PFGGRLLVL_					0	0	0		nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENSG00000059122|ENST00000253928|FLYWCH1;nc|ENSG00000059122|Q4VC44-3|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.3052673339844	2	486.30547	970.596387	0.78572	0.0003821	-1.2488	-0.0006073	-0.46308	-0.0002252	486.30477333878326	121.54	2.2543	120.51	120.01	122.27	-1.0286					108	42	4	0	0	0	0.61208	2	9299	9299;9342		30.504	3.7075	1	892460			42296	1251	34928	34951	45760;45761	45760					0.10991244927799926
PFGGRLLVL	9	Unmodified	_PFGGRLLVL_					0	0	0		nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENSG00000059122|ENST00000253928|FLYWCH1;nc|ENSG00000059122|Q4VC44-3|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.303955078125	2	486.30547	970.596387	0.016353	7.9527E-06	-0.39252	-0.00019088	-0.37617	-0.00018293	486.3051966587704	121.94	2.2082	120.59	120.11	122.32	-1.3479					102	43	4	0	0	0	0.36502	2	11496	11496;11570		55.504	2.3535	1	873390			42297	1251	34928	34951	45762;45763	45762					0.10991244927799926
PFGHGLRPVD	10	Unmodified	_PFGHGLRPVD_					0	0	0		ENSG00000184702|ENST00000455784|SEPTIN5;nc|ENSG00000284874|Q99719-2|SEPTIN5	ENSG00000184702|ENST00000455784|SEPTIN5	ENSG00000184702|ENST00000455784|SEPTIN5	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.3333129882812	2	547.790715	1093.56688	1.2572	0.00068867	-4.0797	-0.0022348	-2.8225	-0.0015462	547.7887970917866	124.87	0.67757	124.87	124.47	125.14	0					32	14	3	0	0	0	0.026665	1	14438	14438		51.335	3.4199	1	207910			42298	8185	34929	34952	45764	45764					0.02383680911657393
PFGIVFFL	8	Unmodified	_PFGIVFFL_					0	0	0			REV__ENST00000393422.6_1_16:75262972-75263290:-|nuORF	REV__ENST00000393422.6_1_16:75262972-75263290:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.2725524902344	2	470.270564	938.526576	-0.81181	-0.00038177	4.1611	0.0019568	3.3493	0.0015751	470.2724357477648	146.54	1.4309	145.1	144.49	145.92	-1.4357					59	27	4	0	0	0	0.7543	1	14417	14417		24.504	4.5072	1	187810	+		42299	25282	34930	34953	45765	45765					0.054853662591767716
PFGKGVKEAL	10	Unmodified	_PFGKGVKEAL_					0	0	0		tr|A0A553SJR9|A0A553SJR9_NIACIDipeptidasePepVOS=NialliacirculansOX=1397GN=pepVPE=4SV=1	tr|A0A553SJR9|A0A553SJR9_NIACIDipeptidasePepVOS=NialliacirculansOX=1397GN=pepVPE=4SV=1	tr|A0A553SJR9|A0A553SJR9_NIACIDipeptidasePepVOS=NialliacirculansOX=1397GN=pepVPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	523.30419921875	2	523.305667	1044.59678	-1.2665	-0.00066275	-2.9732	-0.0015559	-4.2396	-0.0022186	523.3039817928272	135.89	3.3837	134.79	133.42	136.8	-1.1076					145	68	3	0	0	0	0.67931	1	11075	11075		32.812	2.3088	1	55052			42300	33538	34931	34954	45766	45766					0.07626619856978323
PFGKTRGPA	9	Unmodified	_PFGKTRGPA_					0	0	0		ENST00000403633.6_1_7:99006366-99006495:+|nuORF	ENST00000403633.6_1_7:99006366-99006495:+|nuORF	ENST00000403633.6_1_7:99006366-99006495:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.7859191894531	2	465.761426	929.5083	0.18263	8.506E-05	3.1117	0.0014493	3.2944	0.0015344	465.7643778839798	72.855	0.1904	72.855	72.764	72.954	0					7	4	2	0	0	0	0.027462	1	7108	7108		17.365	0	1	71255			42301	11441	34932	34955	45767	45767					0.04072624337186426
PFGMLIFESV	10	Oxidation (M)	_PFGM(Oxidation (M))LIFESV_		PFGM(1)LIFESV		PFGM(94)LIFESV	0	0	1			REV__ENSG00000181017|ENST00000641377|OR56B2P	REV__ENSG00000181017|ENST00000641377|OR56B2P	MULTI-MSMS	OvCa9_classI_Rep2	2	578.28955078125	2	578.291368	1154.56818	-5.4888	-0.0031741	2.5815	0.0014929	-2.9073	-0.0016812	578.2927598597663	159.22	4.1126	158.99	158.53	162.64	-0.22697					262	82	5	0	0	0	0.20267	4	16184	16184;16202;16237;16243		94.006	25.871	1	1073400	+		42302	22213	34933	34956	45768;45769;45770;45771	45768		514			-0.002918658344697178
PFGMLIFESV	10	Oxidation (M)	_PFGM(Oxidation (M))LIFESV_		PFGM(1)LIFESV		PFGM(63)LIFESV	0	0	1			REV__ENSG00000181017|ENST00000641377|OR56B2P	REV__ENSG00000181017|ENST00000641377|OR56B2P	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.2891845703125	2	578.291368	1154.56818	-7.0215	-0.0040605	4.0307	0.0023309	-2.9908	-0.0017295	578.2935937226971	160.38	4.1596	158.77	158.05	162.21	-1.6101					391	105	5	0	0	0	0.43592	1	15933	15933		63.306	8.53	1	1912500	+		42303	22213	34933	34956	45772	45772		514			-0.002918658344697178
PFGPAGLEVQ	10	Unmodified	_PFGPAGLEVQ_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	OvCa9_classI_Rep3	3	507.7667236328125	2	507.766374	1013.5182	-0.36325	-0.00018445	0.3453	0.00017533	-0.01795	-9.1144E-06	507.76638761877894	131.88	1.6751	130.75	129.96	131.63	-1.1249					88	33	4	0	0	0	0.68695	1	10539	10539		31.955	6.5047	1	127470	+		42304	20615	34934	34957	45773	45773					0.01197767551900597
PFGPPVSELD	10	Unmodified	_PFGPPVSELD_					0	0	0			REV__ENSG00000129009|ENST00000249842|ISLR	REV__ENSG00000129009|ENST00000249842|ISLR	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.293701171875	2	529.263665	1056.51278	1.6831	0.0008908	2.4256	0.0012838	4.1087	0.0021746	529.2651454842587	87.525	0.9896	87.525	87.013	88.003	0					30	23	2	0	0	0	0.026665	1	9205	9205		51.335	30.389	1	514000	+		42305	18883	34935	34958	45774	45774					-0.013219560305742561
PFGSQTRGI	9	Unmodified	_PFGSQTRGI_					0	0	0		ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1-5|LMO7;nc|ENSG00000136153|Q8WWI1-3|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7	ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1-3|LMO7	nc|ENSG00000136153|Q8WWI1-3|LMO7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.2481384277344	2	481.756341	961.498129	0.033661	1.6217E-05	-1.0112	-0.00048716	-0.97756	-0.00047095	481.7559062881919	48.062	0.45675	44.955	44.787	45.244	-3.1077					10	8	2	0	0	0	0.027448	1	2615	2615		63.306	13.282	1	10166			42306	4464;15035	34936	34959	45775	45775					0.015840166119460264
PFGSQTRMFL	10	Unmodified	_PFGSQTRMFL_					0	0	0		ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B;nc|ENSG00000204084|P32019-4|INPP5B;INPP5B-TRIT1|1|fusion	ENSG00000204084|ENST00000373024|INPP5B	ENSG00000204084|ENST00000373024|INPP5B	MULTI-MSMS	OvCa99_classI_Rep5	1	592.3032836914062	2	592.300059	1182.58556	2.4995	0.0014804	1.7879	0.001059	4.2873	0.0025394	592.3009835000576	76.094	0.43651	76.094	75.801	76.238	0					19	10	2	0	0	0	0.66721	1	7616	7616		34.173	0	1	1015200			42307	8946	34937	34960	45776	45776					0.0015747449119771773
PFGWPRTA	8	Unmodified	_PFGWPRTA_					0	0	0			REV__nc|ENSG00000157766|P16112-3|ACAN	REV__nc|ENSG00000157766|P16112-3|ACAN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.7995300292969	2	466.24287	930.471186	-0.41385	-0.00019295	4.3274	0.0020176	3.9135	0.0018247	466.2444724232682	104.56	0.52499	102.44	102.11	102.64	-2.1192					10	9	2	0	0	0	0.028476	1	9484	9484		20.482	9.6163	1	7617.5	+		42308	20532	34938	34961	45777	45777					0.003169527914110404
PFHEGKGRSGG	11	Unmodified	_PFHEGKGRSGG_					0	0	0			REV__nc|ENSG00000198626|Q92736-2|RYR2	REV__nc|ENSG00000198626|Q92736-2|RYR2	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.7838745117188	2	564.780879	1127.5472	0.14038	7.9286E-05	3.0988	0.0017501	3.2392	0.0018294	564.782474168473	42.175	1.4465	39.195	38.853	40.3	-2.9804					54	25	4	0	0	0	0.68021	1	1943	1943		36.447	2.5251	1	247320	+		42309	23038	34939	34962	45778	45778					-0.011466950990779878
PFHEGKGRSGG	11	Unmodified	_PFHEGKGRSGG_					0	0	0			REV__nc|ENSG00000198626|Q92736-2|RYR2	REV__nc|ENSG00000198626|Q92736-2|RYR2	MULTI-MATCH	OvCa99_classI_Rep5	1		2	564.780879	1127.5472	-0.19314	-0.00010908	-1.3088	-0.0007392	-1.502	-0.00084828	564.779946512615	39.442	0.42707	39.442	39.242	39.669	0	0.17923	-0.004254	NaN	36.447	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	283530	+		42310	23038	34939	34962							-0.011466950990779878
PFHEGKGRSGG	11	Unmodified	_PFHEGKGRSGG_					0	0	0			REV__nc|ENSG00000198626|Q92736-2|RYR2	REV__nc|ENSG00000198626|Q92736-2|RYR2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	564.780879	1127.5472	1.1221	0.00063373	2.2239	0.001256	3.346	0.0018897	564.7820734207775	41.862	1.2822	39.152	38.931	40.213	-2.7097	-0.11106	-0.00026365	NaN	36.447	39	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71895	+		42311	23038	34939	34962							-0.011466950990779878
PFHEGKGRSGG	11	Unmodified	_PFHEGKGRSGG_					0	0	0			REV__nc|ENSG00000198626|Q92736-2|RYR2	REV__nc|ENSG00000198626|Q92736-2|RYR2	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	564.780879	1127.5472	0.14038	7.9286E-05	3.0988	0.0017501	3.2392	0.0018294	564.782474168473	42.175	1.4465	39.195	38.853	40.3	-2.9804	-0.068174	0.0007246	NaN	36.447	54	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247320	+		42312	23038	34939	34962							-0.011466950990779878
PFHLCVAR	8	Unmodified	_PFHLCVAR_					0	0	0			REV__ENST00000451122.5_1_7:116165439-116165832:+|nuORF	REV__ENST00000451122.5_1_7:116165439-116165832:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	470.7550048828125	2	471.752547	941.490542	-0.59555	-0.00028095	1.8335	0.00086497	1.238	0.00058402	471.75298706415464	59.846	0.88215	57.075	56.777	57.659	-2.7702					18	16	2	0	0	0	0.028476	1	4354	4354		21.702	0	1	11831	+		42313	25967	34940	34963	45779	45779					0.01745585810681405
PFHLSRRAP	9	Unmodified	_PFHLSRRAP_					0	0	0			REV__ENST00000524541.5_1_8:145577961-145582890:+|nuORF	REV__ENST00000524541.5_1_8:145577961-145582890:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.2899169921875	2	540.8067	1079.59885	1.5558	0.00084138	0.20927	0.00011317	1.765	0.00095455	540.8068504860139	83.669	0.2559	83.669	83.545	83.801	0					10	5	2	0	0	0	0.027441	1	8710	8710		37.159	9.0776	1	150340	+		42314	27101	34941	34964	45780	45780					0.0622309338548348
PFHLTSVFL	9	Unmodified	_PFHLTSVFL_					0	0	0			REV__ENSG00000136816|ENST00000259339|TOR1B	REV__ENSG00000136816|ENST00000259339|TOR1B	MULTI-MSMS	OvCa99_classI_Rep5	1	530.7963256835938	2	530.794935	1059.57532	0.6406	0.00034003	0.94361	0.00050086	1.5842	0.00084089	530.7953895085335	159.9	1.1866	159.9	159.52	160.71	0					39	23	2	0	0	0	0.52083	2	18788	18735;18788		40.573	4.9543	1	117420	+		42315	19405	34942	34965	45781;45782	45782					0.047912348282807216
PFHPPLQLFF	10	Unmodified	_PFHPPLQLFF_					0	0	0		ENSG00000047578|ENST00000261588|KATNIP;ENST00000573850.1_1_16:27709674-27761267:+|nuORF	ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	MULTI-MSMS	OvCa99_classI_Rep5	1	621.8384399414062	2	621.837134	1241.65972	1.1751	0.00073075	0.72012	0.0004478	1.8953	0.0011785	621.83747984622	147.67	2.1541	147.67	147.21	149.36	0					105	43	4	0	0	0	0.41846	3	17299	17253;17275;17299		65.803	19.831	1	929800			42316	1146	34943	34966	45783;45784;45785	45785					0.04855185645033089
PFHQMGKPGGP	11	Unmodified	_PFHQMGKPGGP_					0	0	0			REV__ENSG00000204569|ENST00000376511|PPP1R10	REV__ENSG00000204569|ENST00000376511|PPP1R10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.8427734375	2	576.784576	1151.5546	-1.6496	-0.00095147	1.1832	0.00068244	-0.46643	-0.00026903	576.7850282016834	146.03	0.88226	144.59	144.29	145.17	-1.4357					35	16	3	0	0	0	0.0253	1	14391	14391		14.137	8.917	1	92986	+		42317	23168	34944	34967	45786	45786					-0.015116788230216116
PFIAAGLGAAL	11	Unmodified	_PFIAAGLGAAL_					0	0	0		tr|A0A553SSP4|A0A553SSP4_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_03520PE=4SV=1	tr|A0A553SSP4|A0A553SSP4_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_03520PE=4SV=1	tr|A0A553SSP4|A0A553SSP4_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_03520PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	500.79400634765625	2	500.794935	999.575317	-0.44531	-0.00022301	-0.32042	-0.00016047	-0.76574	-0.00038348	500.79474539888093	109.47	3.7802	108.32	107.57	111.35	-1.1444					188	73	5	0	0	0	0.54124	2	7864	7864;7876		50.025	2.1089	1	2461100			42318	34399	34945	34968	45787;45788	45787					0.07551234828270026
PFIDPRLLQI	10	Unmodified	_PFIDPRLLQI_					0	0	0		nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4	nc|ENSG00000071054|O95819-4|MAP4K4	nc|ENSG00000071054|O95819-4|MAP4K4	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.359130859375	2	606.360973	1210.70739	0.38634	0.00023426	-4.331	-0.0026261	-3.9446	-0.0023919	606.3582874939276	105.17	1.5135	103.15	102.79	104.31	-2.0161					81	29	4	0	0	0	0.28845	1	9538	9538		82.241	4.9229	1	610230			42319	1444	34946	34969	45789	45789					0.11046839845243994
PFIGFTYY	8	Unmodified	_PFIGFTYY_					0	0	0		ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	MULTI-SECPEP	OvCa9_classI_Rep2	2	504.2969055175781	2	504.247286	1006.48002	-1.1991	-0.00060466	3.883	0.001958	2.6839	0.0013534	504.2491788733741	103.89	0.74229	103.31	103.08	103.82	-0.57639					24	14	2	0	0	0	0.028476	1	9583	9583		37.028	22.164	1	61164			42320	4281	34947	34970	45790	45790					-0.022961183627671744
PFIGVLLFDI	10	Unmodified	_PFIGVLLFDI_					0	0	0			REV__ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	REV__ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3297119140625	2	567.333893	1132.65323	-3.474	-0.0019709	-3.7638	-0.0021353	-7.2378	-0.0041062	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.71192	1	12086	12086		29.15	0	1	458690	+		42321	15573	34948	34971	45791	45791					0.09221247693653822
PFIKEKEKKS	10	Unmodified	_PFIKEKEKKS_					0	0	0		GPRC5B|p.I238Sfs*14|1|0.09|ENSG00000167191|chr16:19872135-19872135|G/-|frameshift_variant;ENSG00000167191|ENST00000300571|GPRC5B;nc|ENSG00000167191|Q9NZH0-2|GPRC5B	GPRC5B|p.I238Sfs*14|1|0.09|ENSG00000167191|chr16:19872135-19872135|G/-|frameshift_variant	GPRC5B|p.I238Sfs*14|1|0.09|ENSG00000167191|chr16:19872135-19872135|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	411.23626708984375	3	411.911568	1232.71287	0.64892	0.0002673	2.1279	0.0008765	2.7768	0.0011438	411.91233022118706	56.422	0.91076	53.127	52.87	53.781	-3.2944					39	17	3	0	0	0	0.027193	1	3669	3669		16.717	3.9057	1	106010			42322	6767	34949	34972	45792	45792					0.105825186370339
PFIKEKEKKS	10	Unmodified	_PFIKEKEKKS_					0	0	0		GPRC5B|p.I238Sfs*14|1|0.09|ENSG00000167191|chr16:19872135-19872135|G/-|frameshift_variant;ENSG00000167191|ENST00000300571|GPRC5B;nc|ENSG00000167191|Q9NZH0-2|GPRC5B	GPRC5B|p.I238Sfs*14|1|0.09|ENSG00000167191|chr16:19872135-19872135|G/-|frameshift_variant	GPRC5B|p.I238Sfs*14|1|0.09|ENSG00000167191|chr16:19872135-19872135|G/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		3	411.911568	1232.71287	-0.053254	-2.1936E-05	3.0305	0.0012483	2.9773	0.0012264	411.9127504698138	55.737	0.9416	52.933	52.532	53.473	-2.804	-0.097211	0.00061657	NaN	11.636	43	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87962			42323	6767	34949	34972							0.105825186370339
PFIQKAVTP	9	Unmodified	_PFIQKAVTP_					0	0	0			REV__HOXA3|p.A310Rfs*34|1|0.21|ENSG00000105997|chr7:27108319-27108320|-/G|frameshift_variant	REV__HOXA3|p.A310Rfs*34|1|0.21|ENSG00000105997|chr7:27108319-27108320|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	500.79437255859375	2	500.794935	999.575317	-0.33552	-0.00016802	-0.10866	-5.4414E-05	-0.44417	-0.00022244	500.7948099501536	108.45	4.1006	108.22	107.63	111.73	-0.22498					184	82	6	0	0	0	0.28934	1	10155	10155		64.207	4.089	1	2094300	+		42324	17771	34950	34973	45793	45793					0.07551234828270026
PFKIKLKP	8	Unmodified	_PFKIKLKP_					0	0	0			REV__nc|ENSG00000137821|Q8IUZ0-3|LRRC49	REV__nc|ENSG00000137821|Q8IUZ0-3|LRRC49	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.7603759765625	2	485.826038	969.637523	-0.29724	-0.00014441	-4.0569	-0.001971	-4.3542	-0.0021154	485.8236693714129	56.25	0.36556	56.25	56.094	56.459	0					13	8	2	0	0	0	0.028476	1	4636	4636		25.45	0	1	195930	+		42325	19483	34951	34974	45794	45794					0.15149005967259654
PFKINEKVLQ	10	Unmodified	_PFKINEKVLQ_					0	0	0		nc|ENSG00000135336|Q9UBD5-3|ORC3;ENSG00000135336|ENST00000392844|ORC3;nc|ENSG00000135336|Q9UBD5-2|ORC3;ENST00000528393.1_1_11:79699092-79699545:+|nuORF	nc|ENSG00000135336|Q9UBD5-3|ORC3	nc|ENSG00000135336|Q9UBD5-3|ORC3	MULTI-MSMS	OvCa99_classI_Rep5	1	608.356689453125	2	608.358431	1214.70231	1.9383	0.0011792	0.082707	5.0315E-05	2.021	0.0012295	608.3580207784412	127.79	1.3326	127.79	127.27	128.61	0					60	28	3	0	0	0	0.48398	1	14803	14803		56.434	6.8977	1	322000			42326	4368	34952	34975	45795	45795					0.10354535982605739
PFKLSRAR	8	Unmodified	_PFKLSRAR_					0	0	0			REV__nc|ENSG00000124721|Q96JB1-2|DNAH8	REV__nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.7792053222656	2	487.798343	973.582134	0.12634	6.1627E-05	-1.6858	-0.00082231	-1.5594	-0.00076068	487.79733305708805	46.245	0.47762	46.245	46.024	46.501	0					25	10	3	0	0	0	0.028476	1	3251	3251		51.335	17.82	1	678720	+		42327	18702	34953	34976	45796	45796					0.0942859249950061
PFKSFLTDI	9	Unmodified	_PFKSFLTDI_					0	0	0			REV__tr|A0A7D6ZK77|A0A7D6ZK77_9CLOTClassISAM-dependentmethyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11495PE=4SV=1	REV__tr|A0A7D6ZK77|A0A7D6ZK77_9CLOTClassISAM-dependentmethyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11495PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	534.2914428710938	2	534.292225	1066.5699	1.9384	0.0010357	-3.5282	-0.0018851	-1.5898	-0.0008494	534.2902066276332	122.34	1.337	122.34	122.04	123.37	0					82	28	4	0	0	0	0.21231	1	14147	14147		74.255	5.4682	1	3180200	+		42328	32101	34954	34977	45797	45797					0.039275112458199146
PFKYSYPPL	9	Unmodified	_PFKYSYPPL_					0	0	0		MOSPD2|p.N451Lfs*4|1|0.44|ENSG00000130150|chrX:14918712-14918715|CAAA/-|frameshift_variant;nc|ENSG00000130150|Q8NHP6-2|MOSPD2;ENSG00000130150|ENST00000380492|MOSPD2	MOSPD2|p.N451Lfs*4|1|0.44|ENSG00000130150|chrX:14918712-14918715|CAAA/-|frameshift_variant	MOSPD2|p.N451Lfs*4|1|0.44|ENSG00000130150|chrX:14918712-14918715|CAAA/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	556.2991943359375	2	556.294768	1110.57498	2.3496	0.0013071	4.0078	0.0022295	6.3574	0.0035366	556.2968950935649	78.286	0.78031	78.286	78.011	78.791	0					37	18	3	0	0	0	0.31747	1	7934	7934		60.972	2.19	1	1715000			42329	3958	34955	34978	45798	45798					0.02411815108416704
PFLAVPPGPT	10	Unmodified	_PFLAVPPGPT_					0	0	0			REV__ENSG00000119574|ENST00000594051|ZBTB45	REV__ENSG00000119574|ENST00000594051|ZBTB45	MULTI-MSMS	OvCa9_classI_Rep2	2	498.2832336425781	2	498.28166	994.548768	3.6162	0.0018019	0.75369	0.00037555	4.3699	0.0021775	498.28186516898137	24.957	0.3501	22.247	22.129	22.479	-2.7097					16	9	2	0	0	0	0.81289	1	193	193		17.365	0.89182	1	33959	+		42330	18451	34956	34979	45799	45799					0.051275459369549026
PFLDIDAPL	9	Unmodified	_PFLDIDAPL_					0	0	0			REV__ENSG00000266714|ENST00000645453|MYO15B	REV__ENSG00000266714|ENST00000645453|MYO15B	MULTI-MSMS	OvCa99_classI_Rep5	1	500.7729797363281	2	500.771126	999.527698	1.1468	0.00057426	0.70884	0.00035497	1.8556	0.00092923	500.77111752731776	144.91	0.63104	144.91	144.6	145.23	0					18	12	2	0	0	0	0.36502	1	16941	16941		55.504	0.73953	1	123130	+		42331	23589	34957	34980	45800	45800					0.02791535837422998
PFLDQALQL	9	Unmodified	_PFLDQALQL_					0	0	0			REV__ENST00000374881.2_1_6:32812197-32812341:-|nuORF	REV__ENST00000374881.2_1_6:32812197-32812341:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.7887573242188	2	522.78985	1043.56515	-2.3661	-0.001237	-1.6948	-0.000886	-4.0608	-0.002123	522.7888401138426	49.836	1.1945	46.695	46.301	47.496	-3.1416					58	22	5	0	0	0	0.24951	1	2829	2829		68.787	0.30212	1	487310	+		42332	25073	34958	34981	45801	45801					0.04510627103036313
PFLDQALQL	9	Unmodified	_PFLDQALQL_					0	0	0			REV__ENST00000374881.2_1_6:32812197-32812341:-|nuORF	REV__ENST00000374881.2_1_6:32812197-32812341:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	522.78985	1043.56515	-0.671	-0.00035079	-3.5138	-0.001837	-4.1848	-0.0021877	522.7879501751022	49.578	1.5848	46.818	46.424	48.009	-2.7603	0.061432	-0.0014884	NaN	68.787	58	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123200	+		42333	25073	34958	34981							0.04510627103036313
PFLFDRRL	8	Unmodified	_PFLFDRRL_					0	0	0		ENST00000395290.6_1_11:47489658-47490021:-|nuORF	ENST00000395290.6_1_11:47489658-47490021:-|nuORF	ENST00000395290.6_1_11:47489658-47490021:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	533.2722778320312	2	532.306001	1062.59745	0.0074589	3.9704E-06	0.96594	0.00051418	0.9734	0.00051815	532.8082070398558	88.809	0.87335	86.678	86.364	87.237	-2.1309					22	17	2	0	0	0	0.028476	1	5450	5450		38.806	0	1	76760			42334	11285	34959	34982	45802	45802					0.06865459296705012
PFLFYKSL	8	Unmodified	_PFLFYKSL_					0	0	0		tr|A0A7D6ZRV7|A0A7D6ZRV7_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13650PE=4SV=1	tr|A0A7D6ZRV7|A0A7D6ZRV7_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13650PE=4SV=1	tr|A0A7D6ZRV7|A0A7D6ZRV7_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13650PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.31768798828125	2	507.786579	1013.5586	-0.53267	-0.00027048	4.4209	0.0022448	3.8882	0.0019744	507.78850478833846	55.948	1.6737	52.653	52.361	54.035	-3.2944					58	32	3	0	0	0	0.028476	1	3545	3545		45.952	7.1458	1	179060			42335	35723	34960	34983	45803	45803					0.05236733942331284
PFLIFIDD	8	Unmodified	_PFLIFIDD_					0	0	0			REV__ENST00000471540.5_1_21:46683912-46684008:-|nuORF	REV__ENST00000471540.5_1_21:46683912-46684008:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	489.8099670410156	2	490.260394	978.506234	0.66682	0.00032692	-3.7918	-0.001859	-3.125	-0.0015321	490.2585337522844	68.489	0.98251	64.999	64.622	65.605	-3.4902					22	19	2	0	0	0	0.028476	1	5145	5145		29.842	0	1	33733	+		42336	26286	34961	34984	45804	45804					0.016121508087167058
PFLKSDDPI	9	Unmodified	_PFLKSDDPI_					0	0	0		ENSG00000137628|ENST00000393743|DDX60;DDX60|p.L860Qfs*23|1|0.12|ENSG00000137628|chr4:168272134-168272135|-/AACTT|frameshift_variant	ENSG00000137628|ENST00000393743|DDX60	ENSG00000137628|ENST00000393743|DDX60	MULTI-MSMS	OvCa99_classI_Rep5	1	516.2726440429688	2	516.274032	1030.53351	-0.87564	-0.00045207	-3.3189	-0.0017135	-4.1946	-0.0021655	516.2721596903433	59.713	0.58546	59.713	59.494	60.079	0					38	14	4	0	0	0	0.12365	1	5168	5168		90.777	14.607	1	1986900			42337	4602	34962	34985	45805	45805					0.01946634349087617
PFLLCAVLLS	10	Unmodified	_PFLLCAVLLS_					0	0	0		nc|ENSG00000149485|O60427-2|FADS1;nc|ENSG00000149485|O60427|FADS1;ENSG00000149485|ENST00000350997|FADS1	nc|ENSG00000149485|O60427-2|FADS1	nc|ENSG00000149485|O60427-2|FADS1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.7214965820312	2	538.314646	1074.61474	-2.1237	-0.0011432	2.4663	0.0013276	0.34263	0.00018444	538.3165314473862	118.93	0.264	117.58	117.42	117.68	-1.3444					6	4	2	0	0	0	0.026822	1	11153	11153		38.806	3.6054	1	14017			42338	5462	34963	34986	45806	45806					0.08041618787501648
PFLLFQGSALF	11	Unmodified	_PFLLFQGSALF_					0	0	0		ENST00000259008.6_1_17:59938921-59940758:-|nuORF	ENST00000259008.6_1_17:59938921-59940758:-|nuORF	ENST00000259008.6_1_17:59938921-59940758:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	620.2669677734375	2	620.342249	1238.66995	2.14	0.0013275	-4.1406	-0.0025686	-2.0006	-0.0012411	620.3402240307099	95.972	0.83969	95.972	95.538	96.378	0					23	19	2	0	0	0	0.025257	1	10442	10442		36.447	0	1	394340			42339	9840	34964	34987	45807	45807					0.06015748579602587
PFLLVGADPAH	11	Unmodified	_PFLLVGADPAH_					0	0	0		ENST00000303277.6_1_4:1718443-1718770:-|nuORF	ENST00000303277.6_1_4:1718443-1718770:-|nuORF	ENST00000303277.6_1_4:1718443-1718770:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.274169921875	2	568.808574	1135.60259	0.1256	7.1442E-05	0.024379	1.3867E-05	0.14998	8.5309E-05	568.8086122426154	31.273	0.48001	31.273	30.93	31.41	0					18	9	2	0	0	0	0.025853	1	1241	1241		35.618	14.671	1	54899			42340	10211	34965	34988	45808	45808					0.04021718368676375
PFLPFGIPL	9	Unmodified	_PFLPFGIPL_					0	0	0		HPS5|p.T520P|1|0.08|ENSG00000110756|chr11:18296075-18296075|T/G|missense_variant	HPS5|p.T520P|1|0.08|ENSG00000110756|chr11:18296075-18296075|T/G|missense_variant	HPS5|p.T520P|1|0.08|ENSG00000110756|chr11:18296075-18296075|T/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	500.794677734375	2	500.796946	999.57934	-0.33551	-0.00016802	-4.125	-0.0020658	-4.4605	-0.0022338	500.7948099501536	108.45	4.1006	108.22	107.63	111.73	-0.22498					184	82	6	0	0	0	0.32242	2	10207	10186;10207		60.404	4.8994	1	2094300			42341	14488	34966	34989	45809;45810	45810					0.07953324321988475
PFLPFGIPL	9	Unmodified	_PFLPFGIPL_					0	0	0		HPS5|p.T520P|1|0.08|ENSG00000110756|chr11:18296075-18296075|T/G|missense_variant	HPS5|p.T520P|1|0.08|ENSG00000110756|chr11:18296075-18296075|T/G|missense_variant	HPS5|p.T520P|1|0.08|ENSG00000110756|chr11:18296075-18296075|T/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	500.7942810058594	2	500.796946	999.57934	-0.44531	-0.00022301	-4.3368	-0.0021718	-4.7821	-0.0023949	500.79474539888093	109.47	3.7802	108.32	107.57	111.35	-1.1444					188	73	5	0	0	0	0.42921	1	7890	7890		49.211	4.6797	1	2461100			42342	14488	34966	34989	45811	45811					0.07953324321988475
PFLPKPLFF	9	Unmodified	_PFLPKPLFF_					0	0	0		nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	MULTI-MSMS	OvCa99_classI_Rep5	1	553.3272705078125	2	553.325871	1104.63719	0.69489	0.0003845	1.5551	0.0008605	2.25	0.001245	553.3266810484581	141.42	2.3828	141.42	141.08	143.46	0					111	47	5	0	0	0	0.064607	1	16532	16532		110.34	37.717	1	957920			42343	15128	34967	34990	45812	45812					0.08905586247419706
PFLPLQKEF	9	Unmodified	_PFLPLQKEF_					0	0	0		ENST00000575714.5_1_16:4407825-4408182:-|nuORF	ENST00000575714.5_1_16:4407825-4408182:-|nuORF	ENST00000575714.5_1_16:4407825-4408182:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	559.8174438476562	2	559.815867	1117.61718	2.0742	0.0011611	-0.45737	-0.00025604	1.6168	0.0009051	559.8156915922438	133.1	8.2265	133.1	132.6	140.83	0					464	175	6	0	0	0	0.40667	1	16003	16003		51.335	3.4199	1	47573000			42344	13941	34968	34991	45813	45813					0.06307790516802925
PFLPREEKVKK	11	Unmodified	_PFLPREEKVKK_					0	0	0			REV__ENSG00000132155|ENST00000251849|RAF1	REV__ENSG00000132155|ENST00000251849|RAF1	MSMS	OvCa9_classI_Rep4_	4	457.607421875	3	457.61	1369.80817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	157	1	155.46	154.96	155.96	-1.545								0	0	0	0.19474	1	15519	15519		17.167	2.4731	1		+		42345	19056	34969	34992	45814	45814					0.1380587182804902
PFLQHVYDI	9	Unmodified	_PFLQHVYDI_					0	0	0		tr|A0A553SHU5|A0A553SHU5_NIACIPTSsugartransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_13640PE=4SV=1	tr|A0A553SHU5|A0A553SHU5_NIACIPTSsugartransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_13640PE=4SV=1	tr|A0A553SHU5|A0A553SHU5_NIACIPTSsugartransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_13640PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	566.2962036132812	2	566.295299	1130.57605	2.5225	0.0014285	2.4818	0.0014054	5.0043	0.0028339	566.296685628697	98.781	1.028	98.781	98.29	99.318	0					47	24	3	0	0	0	0.33652	1	10908	10908		58.782	5.8453	1	2778400			42346	33314	34970	34993	45815	45815					0.01598029477304408
PFLTKYLD	8	Unmodified	_PFLTKYLD_					0	0	0			REV__ENST00000490885.6_1_1:186645551-186649536:-|nuORF	REV__ENST00000490885.6_1_1:186645551-186649536:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.3343811035156	2	498.773668	995.532783	-1.4713	-0.00073383	-4.038	-0.002014	-5.5093	-0.0027479	498.7715712668859	137.02	1.0194	135.93	135.61	136.63	-1.0858					31	20	2	0	0	0	0.028476	1	11128	11128		71.296	39.341	1	44186	+		42347	26662	34971	34994	45816	45816					0.03483839700038516
PFLTSFPLFF	10	Unmodified	_PFLTSFPLFF_					0	0	0			REV__ENST00000461469.5_1_7:156619430-156685195:-|nuORF	REV__ENST00000461469.5_1_7:156619430-156685195:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	405.7641296386719	3	405.886471	1214.63758	1.223	0.0004964	-1.636	-0.00066403	-0.41299	-0.00016763	405.8857310960216	90.864	1.0708	88.289	88.058	89.129	-2.575					43	20	3	0	0	0	0.02717	1	7924	7924		17.468	0	1	53571	+		42348	25757	34972	34995	45817	45817					0.03884961176595425
PFLTSFPLFF	10	Unmodified	_PFLTSFPLFF_					0	0	0			REV__ENST00000461469.5_1_7:156619430-156685195:-|nuORF	REV__ENST00000461469.5_1_7:156619430-156685195:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	405.886471	1214.63758	3.0716	0.0012467	-2.8063	-0.0011391	0.26522	0.00010765	405.88521494430563	89.475	0.79269	88.173	87.987	88.78	-1.302	-0.13413	-0.0011791	NaN	17.468	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55789	+		42349	25757	34972	34995							0.03884961176595425
PFLTSFPLFF	10	Unmodified	_PFLTSFPLFF_					0	0	0			REV__ENST00000461469.5_1_7:156619430-156685195:-|nuORF	REV__ENST00000461469.5_1_7:156619430-156685195:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		3	405.886471	1214.63758	0.32248	0.00013089	-0.71908	-0.00029186	-0.3966	-0.00016097	405.8860462950093	90.54	1.1173	88.46	88.108	89.225	-2.0805	0.1522	0.0013624	NaN	17.468	38	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28943	+		42350	25757	34972	34995							0.03884961176595425
PFLVFYIM	8	Unmodified	_PFLVFYIM_					0	0	0			REV__ENST00000501011.6_1_11:82784390-82784510:+|nuORF	REV__ENST00000501011.6_1_11:82784390-82784510:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.8231811523438	2	515.277532	1028.54051	-1.1972	-0.00061691	-1.9292	-0.00099407	-3.1264	-0.001611	515.2766254761331	120.27	1.1313	118.92	118.77	119.9	-1.3444					29	21	3	0	0	0	0.028476	1	11300	11300		43.626	0	1	22316	+		42351	26816	34973	34996	45818	45818					0.02738275695946868
PFLVKRLP	8	Unmodified	_PFLVKRLP_					0	0	0		OR52N5|p.V203Afs*3|1|0.03|ENSG00000181009|chr11:5778027-5778027|A/-|frameshift_variant;ENSG00000181009|ENST00000641181|OR52N5	OR52N5|p.V203Afs*3|1|0.03|ENSG00000181009|chr11:5778027-5778027|A/-|frameshift_variant	OR52N5|p.V203Afs*3|1|0.03|ENSG00000181009|chr11:5778027-5778027|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	485.315673828125	2	485.315838	968.617122	-0.54978	-0.00026682	-3.2403	-0.0015726	-3.7901	-0.0018394	485.31406596961307	69.572	1.4535	69.572	69.228	70.681	0					103	35	5	0	0	0	0.65582	1	6604	6604		52.299	9.8247	1	39494000			42352	7911	34974	34997	45819	45819					0.13155835307463803
PFLVLLLP	8	Unmodified	_PFLVLLLP_					0	0	0		ENST00000453514.5_1_5:78908374-78908419:+|nuORF	ENST00000453514.5_1_5:78908374-78908419:+|nuORF	ENST00000453514.5_1_5:78908374-78908419:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	456.7983093261719	2	456.301865	910.589176	0.37668	0.00017188	-4.0168	-0.0018329	-3.6401	-0.001661	456.29990633723753	104.19	0.83259	102.75	102.39	103.23	-1.4347					20	15	2	0	0	0	0.028476	1	7297	7297		33.493	0	1	13779			42353	12073	34975	34998	45820	45820					0.13030512327384258
PFLVLLLP	8	Unmodified	_PFLVLLLP_					0	0	0		ENST00000453514.5_1_5:78908374-78908419:+|nuORF	ENST00000453514.5_1_5:78908374-78908419:+|nuORF	ENST00000453514.5_1_5:78908374-78908419:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	456.301865	910.589176	-0.070413	-3.213E-05	-3.3672	-0.0015364	-3.4376	-0.0015686	456.3000543730326	104.95	0.66789	102.84	102.43	103.1	-2.1192	0.041572	0.00030913	NaN	54.895	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15396			42354	12073	34975	34998							0.13030512327384258
PFLVPVPAR	9	Unmodified	_PFLVPVPAR_					0	0	0		nc|ENSG00000213638|Q96EY9|ADAT3;ENSG00000213638|ENST00000329478|ADAT3	nc|ENSG00000213638|Q96EY9|ADAT3	nc|ENSG00000213638|Q96EY9|ADAT3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.3345947265625	2	498.30547	994.596387	-0.90876	-0.00045284	2.6578	0.0013244	1.749	0.00087155	498.3069921784344	124.13	0.70749	122.74	122.47	123.18	-1.3908					19	13	2	0	0	0	0.027456	1	11796	11796		30.504	0	1	13258			42355	9138	34976	34999	45821	45821					0.09887244927790562
PFMAMLRNL	9	Unmodified	_PFMAMLRNL_					0	0	0		TEP1|p.P1636Cfs*29|1|0.07|ENSG00000129566|chr14:20380332-20380333|-/CA|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1	TEP1|p.P1636Cfs*29|1|0.07|ENSG00000129566|chr14:20380332-20380333|-/CA|frameshift_variant	TEP1|p.P1636Cfs*29|1|0.07|ENSG00000129566|chr14:20380332-20380333|-/CA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.8274536132812	2	546.788272	1091.56199	1.5444	0.00084444	-1.1965	-0.00065426	0.34781	0.00019018	546.7880419779401	126.93	0.81282	126.93	126.42	127.23	0					29	17	2	0	0	0	0.027462	1	14706	14706		19.36	0	1	58476			42356	3936	34977	35000	45822	45822					0.01987337453033433
PFNCCFRVL	9	Unmodified	_PFNCCFRVL_					0	0	0			REV__chr13:43059012-43068930|141|10.11|0.21|5.56|+|0|TE_info:L1PB1,L1PB1_dup10508,L1,LINE,donor,-,43056899,43059012|None,DNAJC15|11	REV__chr13:43059012-43068930|141|10.11|0.21|5.56|+|0|TE_info:L1PB1,L1PB1_dup10508,L1,LINE,donor,-,43056899,43059012|None,DNAJC15|11	MULTI-SECPEP	OvCa9_classI_Rep2	2	550.32568359375	2	549.764797	1097.51504	-0.60297	-0.00033149	-4.1598	-0.0022869	-4.7627	-0.0026184	549.7622960318877	84.213	0.57069	82.667	82.43	83.001	-1.5462					15	10	2	0	0	0	0.027456	1	7230	7230		38.806	3.1879	1	22899	+		42357	15900	34978	35001	45823	45823					-0.029815220981163293
PFNERNLK	8	Unmodified	_PFNERNLK_					0	0	0			REV__nc|ENSG00000145604|Q13309-2|SKP2	REV__nc|ENSG00000145604|Q13309-2|SKP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.26751708984375	2	509.277441	1016.54033	-0.57808	-0.0002944	4.2938	0.0021868	3.7158	0.0018924	509.78164944272686	39.549	0.20569	39.549	39.463	39.669	0					7	4	2	0	0	0	0.028476	1	2348	2348		44.117	17.321	1	71532	+		42358	19970	34979	35002	45824	45824					0.03271992020336256
PFNRSSSDMDL	11	Unmodified	_PFNRSSSDMDL_					0	0	0		ENSG00000109686|ENST00000604030|SH3D19;nc|ENSG00000109686|Q5HYK7-3|SH3D19;nc|ENSG00000109686|Q5HYK7-2|SH3D19;nc|ENSG00000109686|Q5HYK7|SH3D19;LRBA-SH3D19|2|fusion;ENST00000478503.6_1_4:152043245-152086876:-|nuORF;LRBA-SH3D19|3|fusion	ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	MULTI-MSMS	OvCa99_classI_Rep5	1	423.5254211425781	3	423.524043	1267.5503	-0.88159	-0.00037337	3.4567	0.001464	2.5751	0.0010906	423.52550439745175	34.563	1.0324	34.563	34.351	35.384	0					49	21	3	0	0	0	0.67712	1	1673	1673		37.508	2.3561	1	1534800			42359	2727	34980	35003	45825	45825					-0.0727723282725492
PFPAFLPPTL	10	Unmodified	_PFPAFLPPTL_					0	0	0		ENST00000369902.7_1_10:104391017-104391560:+|nuORF	ENST00000369902.7_1_10:104391017-104391560:+|nuORF	ENST00000369902.7_1_10:104391017-104391560:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	549.7960205078125	2	550.312961	1098.61137	-1.0389	-0.00057174	-1.8353	-0.00101	-2.8743	-0.0015818	550.3130122072574	90.073	0.8716	87.993	87.696	88.567	-2.0805					44	16	4	0	0	0	0.027056	1	5552	5552		35.618	16.258	1	75859			42360	10909	34981	35004	45826	45826					0.06600692005144992
PFPAFLPPTL	10	Unmodified	_PFPAFLPPTL_					0	0	0		ENST00000369902.7_1_10:104391017-104391560:+|nuORF	ENST00000369902.7_1_10:104391017-104391560:+|nuORF	ENST00000369902.7_1_10:104391017-104391560:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	550.312961	1098.61137	2.2142	0.0012185	-1.9223	-0.0010579	0.29188	0.00016062	550.3120589470547	89.314	1.1371	87.947	87.379	88.516	-1.3676	-0.033652	6.661E-05	NaN	27.882	32	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44190			42361	10909	34981	35004							0.06600692005144992
PFPIGDKVTF	10	Unmodified	_PFPIGDKVTF_					0	0	0		ENST00000515796.1_1_5:148577795-148580029:+|nuORF;nc|ENSG00000173210|O94929-2|ABLIM3;nc|ENSG00000173210|O94929-3|ABLIM3;ENSG00000173210|ENST00000309868|ABLIM3	ENST00000515796.1_1_5:148577795-148580029:+|nuORF	ENST00000515796.1_1_5:148577795-148580029:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.3058471679688	2	560.8055	1119.59645	1.0603	0.00059465	2.0752	0.0011638	3.1355	0.0017584	560.8064098065792	161.6	0.60727	161.6	161.11	161.72	0					13	11	2	0	0	0	0.027028	1	18958	18958		24.519	12.312	1	28719			42362	7359	34982	35005	45827	45827					0.04143200137127678
PFPLAQLQPK	10	Unmodified	_PFPLAQLQPK_					0	0	0		ENST00000253233.5_1_12:123717606-123717849:+|nuORF	ENST00000253233.5_1_12:123717606-123717849:+|nuORF	ENST00000253233.5_1_12:123717606-123717849:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	570.7820434570312	2	569.834591	1137.65463	-1.4776	-0.000842	-2.256	-0.0012856	-3.7337	-0.0021276	569.8332224837311	93.464	1.1662	91.502	91.279	92.445	-1.9617					45	22	4	0	0	0	0.026822	1	5966	5966		30.504	14.03	1	252200			42363	9803	34983	35006	45828	45828					0.09130881782402867
PFPSQLSGLN	10	Unmodified	_PFPSQLSGLN_					0	0	0			REV__chr7:102584338-102686033|188|13.95|0.0|20.41|-|2|TE_info:AluSg,AluSg_dup14918,Alu,SINE,donor,+,102686033,102686175|RASA4,None|1	REV__chr7:102584338-102686033|188|13.95|0.0|20.41|-|2|TE_info:AluSg,AluSg_dup14918,Alu,SINE,donor,+,102686033,102686175|RASA4,None|1	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.3356323242188	2	530.277106	1058.53966	1.3587	0.00072047	1.7867	0.00094745	3.1454	0.0016679	530.2780436658305	122.74	1.6718	121.71	120.85	122.52	-1.0286					62	31	3	0	0	0	0.026891	1	9528	9528		31.53	10.583	1	150290	+		42364	16087	34984	35007	45829	45829					0.01273152580643
PFPVPHGP	8	Unmodified	_PFPVPHGP_					0	0	0		ENST00000423751.2_1_7:99757553-99764836:-|nuORF;nc|ENSG00000197093|Q96RP7-2|GAL3ST4;ENST00000413800.5_1_7:99764329-99764836:-|nuORF	ENST00000423751.2_1_7:99757553-99764836:-|nuORF	ENST00000423751.2_1_7:99757553-99764836:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	424.2281188964844	2	424.226688	846.438824	0.032684	1.3866E-05	0.95187	0.00040381	0.98456	0.00041768	424.22695289318114	71.274	0.60043	71.274	71.068	71.668	0					33	14	3	0	0	0	0.64315	1	6883	6883		54.895	10.778	1	2243700			42365	11706	34985	35008	45830	45830					0.009461653884272891
PFPWPHVPL	9	Unmodified	_PFPWPHVPL_					0	0	0			REV__nc|ENSG00000179082|Q8NAJ2|LINC02913	REV__nc|ENSG00000179082|Q8NAJ2|LINC02913	MULTI-SECPEP	OvCa9_classI_Rep2	2	545.8162841796875	2	545.297645	1088.58074	-1.1731	-0.0006397	-3.8599	-0.0021048	-5.0331	-0.0027445	545.2952781030344	120.86	0.69049	120.66	120.36	121.05	-0.19719					22	13	2	0	0	0	0.027462	1	11633	11633		21.702	0	1	23802	+		42366	29030	34986	35009	45831	45831					0.03998958410738851
PFQKCFGAF	9	Unmodified	_PFQKCFGAF_					0	0	0		ENST00000397661.6_1_19:13206434-13206683:+|nuORF	ENST00000397661.6_1_19:13206434-13206683:+|nuORF	ENST00000397661.6_1_19:13206434-13206683:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	522.75244140625	2	522.752213	1043.48987	3.3759	0.0017648	-4.1844	-0.0021874	-0.80851	-0.00042265	522.7498693889222	26.205	1.4035	23.495	23.207	24.61	-2.7097					77	38	3	0	0	0	0.44294	1	330	330		47.916	10.756	1	431350			42367	11351	34987	35010	45832	45832					-0.03013253629023893
PFQRISPL	8	Unmodified	_PFQRISPL_					0	0	0		tr|A0A553SK72|A0A553SK72_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18265PE=4SV=1	tr|A0A553SK72|A0A553SK72_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18265PE=4SV=1	tr|A0A553SK72|A0A553SK72_NIACILysMpeptidoglycan-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18265PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	479.2790832519531	2	479.279452	956.544351	-0.31076	-0.00014894	0.33219	0.00015921	0.021432	1.0272E-05	479.2797349881233	95.486	3.0134	94.457	93.134	96.147	-1.0281					131	60	4	0	0	0	0.56113	1	8595	8595		71.378	0	1	2203400			42368	33587	34988	35011	45833	45833					0.0643408151404401
PFQYHHRN	8	Unmodified	_PFQYHHRN_					0	0	0		nc|ENSG00000116731|Q13029-5|PRDM2;nc|ENSG00000116731|Q13029-3|PRDM2;nc|ENSG00000116731|Q13029-2|PRDM2;ENSG00000116731|ENST00000311066|PRDM2	nc|ENSG00000116731|Q13029-5|PRDM2	nc|ENSG00000116731|Q13029-5|PRDM2	MULTI-MSMS	OvCa99_classI_Rep5	1	549.7616577148438	2	549.765032	1097.51551	1.0082	0.00055426	-0.85259	-0.00046873	0.15558	8.5534E-05	549.7642897467599	149.63	2.5698	149.63	149.31	151.88	0					74	51	2	0	0	0	0.7043	1	17733	17733		42.474	8.5528	1	363850			42369	3204	34989	35012	45834	45834					-0.029346430623718334
PFRERLESI	9	Unmodified	_PFRERLESI_					0	0	0			REV__nc|ENSG00000141401|O14732-2|IMPA2	REV__nc|ENSG00000141401|O14732-2|IMPA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.7904052734375	2	573.81693	1145.61931	-0.33032	-0.00018954	-3.4944	-0.0020051	-3.8247	-0.0021947	573.8152282920578	30.257	0.4465	30.257	30.036	30.483	0					15	8	3	0	0	0	0.02741	1	1175	1175		51.335	0	1	44611	+		42370	19734	34990	35013	45835	45835					0.052322192545943835
PFRGGHRRHC	10	Unmodified	_PFRGGHRRHC_					0	0	0			REV__chr2:113218609-113227155|138|13.16|0.78|4.07|-|1|PAX8,PAX8|1	REV__chr2:113218609-113227155|138|13.16|0.78|4.07|-|1|PAX8,PAX8|1	MULTI-MSMS	OvCa99_classI_Rep5	1	611.8128662109375	2	611.809782	1221.60501	1.6084	0.00098402	2.2738	0.0013911	3.8821	0.0023751	611.8109123293345	130.6	1.0946	130.6	130.1	131.2	0					65	22	5	0	0	0	0.67931	1	15159	15159		32.812	2.4947	1	695010	+		42371	15991	34991	35014	45836	45836					0.003072883453569375
PFRGTALEY	9	Unmodified	_PFRGTALEY_					0	0	0			REV__ENST00000536413.2_1_17:12028601-12044574:+|nuORF	REV__ENST00000536413.2_1_17:12028601-12044574:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	527.27197265625	2	527.271824	1052.5291	-0.24152	-0.00012735	1.6991	0.00089589	1.4576	0.00076854	527.2716092813203	96.009	1.1906	94.981	94.565	95.756	-1.0281					66	23	5	0	0	0	0.3076	1	8665	8665		62.107	12.666	1	482700	+		42372	16798	34992	35015	45837	45837					0.004931699261760514
PFRQGWPL	8	Unmodified	_PFRQGWPL_					0	0	0		ENST00000468221.5_1_2:219246767-219246929:+|nuORF	ENST00000468221.5_1_2:219246767-219246929:+|nuORF	ENST00000468221.5_1_2:219246767-219246929:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	500.7716979980469	2	500.771794	999.529036	1.1468	0.00057426	-0.6265	-0.00031373	0.52025	0.00026053	500.77111752731776	144.91	0.63104	144.91	144.6	145.23	0					18	12	2	0	0	0	0.60486	1	16949	16949		62.978	12.954	1	123130			42373	12324	34993	35016	45838	45838					0.02925214716856317
PFRRSVSP	8	Unmodified	_PFRRSVSP_					0	0	0		nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-2|UNC80;nc|ENSG00000144406|Q8N2C7-4|UNC80;ENST00000489023.5_1_2:210693994-210832362:+|nuORF	nc|ENSG00000144406|Q8N2C7-7|UNC80	nc|ENSG00000144406|Q8N2C7-7|UNC80	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.2768859863281	2	473.266876	944.519199	2.0192	0.00095562	-3.3439	-0.0015826	-1.3247	-0.00062695	473.26516256182947	85.813	0.74883	83.167	82.945	83.693	-2.6463					22	14	2	0	0	0	0.028476	1	7292	7292		50.025	0	1	55301			42374	5149	34994	35017	45839	45839					0.04472026711471244
PFRSDKLASTL	11	Unmodified	_PFRSDKLASTL_					0	0	0			REV__nc|ENSG00000101935|Q9Y4X0-4|AMMECR1	REV__nc|ENSG00000101935|Q9Y4X0-4|AMMECR1	MULTI-MSMS	OvCa9_classI_Rep3	3	412.2314453125	3	412.231189	1233.67174	1.934	0.00079726	-0.68164	-0.00028099	1.2524	0.00051626	412.2308161483838	65.879	3.828	62.933	62.452	66.28	-2.9459					181	75	4	0	0	0	0.71191	1	2693	2693		17.167	0	1	1016400	+		42375	17526	34995	35018	45840	45840					0.06424757597574171
PFRTGPVTL	9	Unmodified	_PFRTGPVTL_					0	0	0			REV__nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3	REV__nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3	MULTI-MSMS	OvCa9_classI_Rep3	3	494.2874755859375	2	494.284734	986.554916	-1.2403	-0.00061306	4.2867	0.0021188	3.0464	0.0015058	494.28670132933	84.122	2.6507	81.861	81.346	83.997	-2.261					153	54	4	0	0	0	0.1804	1	4859	4859		79.713	0	1	2419900	+		42376	23515	34996	35019	45841	45841					0.06110064168478857
PFRTGPVTL	9	Unmodified	_PFRTGPVTL_					0	0	0			REV__nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3	REV__nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.28704833984375	2	494.284734	986.554916	1.0873	0.00053743	2.2089	0.0010918	3.2962	0.0016293	494.2857084115825	84.709	2.1185	82.046	81.458	83.577	-2.6629					122	43	4	0	0	0	0.21231	1	7099	7099		74.255	0	1	1920500	+		42377	23515	34996	35019	45842	45842					0.06110064168478857
PFRTQLMQL	9	Unmodified	_PFRTQLMQL_					0	0	0			REV__nc|ENSG00000143569|Q14157-4|UBAP2L	REV__nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-MSMS	OvCa99_classI_Rep5	1	567.30810546875	2	567.310426	1132.6063	2.5603	0.0014525	-2.2213	-0.0012602	0.33898	0.00019231	567.3088137670582	113.34	0.61816	113.34	112.88	113.5	0					43	14	4	0	0	0	0.16562	1	12907	12907		82.241	7.9855	1	659680	+		42378	19853	34997	35020	45843	45843					0.04530064870868955
PFRVAPVL	8	Unmodified	_PFRVAPVL_					0	0	0		nc|ENSG00000187260|Q86TI4-4|WDR86	nc|ENSG00000187260|Q86TI4-4|WDR86	nc|ENSG00000187260|Q86TI4-4|WDR86	MULTI-MSMS	OvCa9_classI_Rep3	3	449.7794189453125	2	449.779088	897.543623	1.6671	0.00074983	-1.8127	-0.00081531	-0.14558	-6.5481E-05	449.77816595523103	112.76	1.0815	111.69	111.22	112.3	-1.0753					58	21	3	0	0	0	0.49583	3	8260	8239;8260;8281		77.944	14.638	1	557310			42379	15224	34998	35021	45844;45845;45846	45845					0.09075286864992904
PFRVAPVL	8	Unmodified	_PFRVAPVL_					0	0	0		nc|ENSG00000187260|Q86TI4-4|WDR86	nc|ENSG00000187260|Q86TI4-4|WDR86	nc|ENSG00000187260|Q86TI4-4|WDR86	MULTI-MSMS	OvCa9_classI_Rep4_	4	449.7796936035156	2	449.779088	897.543623	0.94367	0.00042444	-1.0764	-0.00048412	-0.13269	-5.9679E-05	449.7784940373724	113.16	1.22	111.71	111.21	112.43	-1.4461					61	24	3	0	0	0	0.38514	1	10490	10490		90.939	19.561	1	593990			42380	15224	34998	35021	45847	45847					0.09075286864992904
PFRYTGHWER	10	Unmodified	_PFRYTGHWER_					0	0	0		ENST00000434140.5_2_3:46717393-46723043:-|nuORF;ENST00000450172.5_2_3:46722734-46730936:-|nuORF;nc|ENSG00000178038|Q60I27-2|ALS2CL;ENSG00000178038|ENST00000318962|ALS2CL	ENST00000434140.5_2_3:46717393-46723043:-|nuORF	ENST00000434140.5_2_3:46717393-46723043:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	449.77874755859375	3	450.223028	1347.64725	2.9455	0.0013261	3.3628	0.001514	6.3083	0.0028401	450.2246530422699	111.79	0.59071	111.65	111.42	112.01	-0.13961					17	11	2	0	0	0	0.026942	1	10535	10535		40.058	5.9717	1	15943			42381	7731	34999	35022	45848	45848					-0.01266457765314044
PFSFGLVIQQV	11	Unmodified	_PFSFGLVIQQV_					0	0	0		ENST00000548568.5_1_12:120636317-120636584:-|nuORF;ENST00000592549.1_1_18:57492004-57492280:+|nuORF;ENST00000459899.1_1_14:35857513-35858113:-|nuORF;nc|ENSG00000213553|Q8NHW5|RPLP0P6;ENSG00000089157|ENST00000392514|RPLP0	ENST00000548568.5_1_12:120636317-120636584:-|nuORF	ENST00000548568.5_1_12:120636317-120636584:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	412.2308654785156	3	412.23253	1233.67576	1.8624	0.00076774	-3.9397	-0.0016241	-2.0773	-0.00085634	412.2308612365413	65.473	2.1985	62.778	62.262	64.461	-2.6958					106	43	3	0	0	0	0.64273	1	5027	5027		42.338	2.2799	1	733070			42382	1812	35000	35023	45849	45849					0.06826847091269883
PFSKMWEEKL	10	Unmodified	_PFSKMWEEKL_					0	0	0			REV__ENST00000427497.3_1_17:17110364-17131447:-|nuORF	REV__ENST00000427497.3_1_17:17110364-17131447:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	432.2225341796875	3	432.221525	1293.64274	-1.8932	-0.0008183	3.8336	0.0016569	1.9403	0.00083864	432.22317716770107	63.149	1.9449	60.405	59.899	61.844	-2.7444					99	36	4	0	0	0	0.32747	1	4759	4759		77.533	15.367	1	676300	+		42383	25681	35001	35024	45850	45850					0.00766896976915632
PFSPIQNAL	9	Unmodified	_PFSPIQNAL_					0	0	0		ENSG00000010818|ENST00000367603|HIVEP2	ENSG00000010818|ENST00000367603|HIVEP2	ENSG00000010818|ENST00000367603|HIVEP2	MULTI-MSMS	OvCa9_classI_Rep2	2	493.7668762207031	2	493.768917	985.523281	-0.73998	-0.00036538	-4.3072	-0.0021268	-5.0472	-0.0024921	493.76710400194355	68.35	1.8857	65.73	65.18	67.066	-2.6203					109	37	6	0	0	0	0.33652	1	5398	5398		58.782	5.4305	1	960960			42384	950	35002	35025	45851	45851					0.029940714145254788
PFSRPPLYI	9	Unmodified	_PFSRPPLYI_					0	0	0			REV__ENST00000383699.7_1_3:85008576-85008759:+|nuORF	REV__ENST00000383699.7_1_3:85008576-85008759:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2767333984375	2	545.30821	1088.60187	1.7002	0.00092715	-0.11125	-6.0665E-05	1.589	0.00086648	545.3080580120647	128.08	1.1086	128.08	127.4	128.51	0					31	23	2	0	0	0	0.027462	1	14758	14758		37.159	0	1	45201	+		42385	25221	35003	35026	45852	45852					0.061109237195978494
PFSVVRSLCL	10	Unmodified	_PFSVVRSLCL_					0	0	0		ENST00000284320.5_1_3:100119782-100120241:-|nuORF	ENST00000284320.5_1_3:100119782-100120241:-|nuORF	ENST00000284320.5_1_3:100119782-100120241:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.3130493164062	2	560.812802	1119.61105	2.3001	0.0012899	3.8049	0.0021338	6.1049	0.0034237	560.8148675735948	129.64	1.1256	129.64	128.98	130.1	0					24	13	3	0	0	0	0.026968	1	15002	15002		36.447	5.9431	1	573050			42386	10068	35004	35027	45853	45853					0.056029490136324966
PFSWDRVL	8	Unmodified	_PFSWDRVL_					0	0	0			REV__ENSG00000184743|ENST00000398868|ATL3	REV__ENSG00000184743|ENST00000398868|ATL3	MULTI-MSMS	OvCa99_classI_Rep5	1	510.27130126953125	2	510.269084	1018.52362	1.7689	0.00090262	1.0274	0.00052427	2.7963	0.0014269	510.269428597327	135	0.67717	135	134.78	135.46	0					34	14	4	0	0	0	0.73205	1	15721	15721		35.618	0	1	159400	+		42387	22448	35005	35028	45854	45854					0.015094911343794593
PFTGKNCSEI	10	Unmodified	_PFTGKNCSEI_					0	0	0		nc|ENSG00000188107|Q5T1H1|EYS;ENSG00000188107|ENST00000503581|EYS;nc|ENSG00000188107|Q5T1H1-2|EYS;nc|ENSG00000188107|Q5T1H1-4|EYS	nc|ENSG00000188107|Q5T1H1|EYS	nc|ENSG00000188107|Q5T1H1|EYS	MULTI-MSMS	OvCa99_classI_Rep5	1	548.2615356445312	2	548.260599	1094.50665	0.86494	0.00047421	-2.5759	-0.0014123	-1.7109	-0.00093804	548.2590165272784	156.63	0.4016	156.63	156.45	156.85	0					14	7	2	0	0	0	0.66944	1	18365	18365		33.922	0.40605	1	52099			42388	15229	35006	35029	45855	45855					-0.03682797533747362
PFTLAVLLR	9	Unmodified	_PFTLAVLLR_					0	0	0		ENSG00000152292|ENST00000469800|SH2D6	ENSG00000152292|ENST00000469800|SH2D6	ENSG00000152292|ENST00000469800|SH2D6	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.309326171875	2	515.326402	1028.63825	1.0391	0.00053547	0.91735	0.00047274	1.9564	0.0010082	515.3265372118518	144.86	0.29057	144.86	144.6	144.89	0					8	5	2	0	0	0	0.027462	1	16933	16933		31.955	0	1	27739			42389	5617	35007	35030	45856	45856					0.1250780061632213
PFTLIPRTG	9	Unmodified	_PFTLIPRTG_					0	0	0			REV__ENST00000534028.5_1_11:65147615-65149579:-|nuORF	REV__ENST00000534028.5_1_11:65147615-65149579:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	501.2898864746094	2	501.292559	1000.57057	-0.80197	-0.00040202	-3.5119	-0.0017605	-4.3139	-0.0021625	501.2906816095173	135.63	4.8104	135.4	133.71	138.52	-0.22697					221	98	3	0	0	0	0.5811	1	13465	13465		34.173	6.2903	1	70595	+		42390	27221	35008	35031	45857	45857					0.07030350685533904
PFTLSLLTV	9	Unmodified	_PFTLSLLTV_					0	0	0			REV__ENST00000398125.5_1_4:2930542-2930704:+|nuORF	REV__ENST00000398125.5_1_4:2930542-2930704:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.2767333984375	2	495.797143	989.579734	-0.058445	-2.8977E-05	-2.6953	-0.0013363	-2.7538	-0.0013653	495.7955295229955	58.302	0.37696	58.302	58.153	58.53	0					14	8	2	0	0	0	0.027462	1	4937	4937		15.642	0	1	203690	+		42391	25372	35009	35032	45858	45858					0.08452699251188278
PFTSARPR	8	Unmodified	_PFTSARPR_					0	0	0			REV__ENST00000371065.8_1_1:65897894-65898110:+|nuORF	REV__ENST00000371065.8_1_1:65897894-65898110:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	466.59442138671875	2	466.259051	930.503549	-0.11926	-5.5608E-05	2.6649	0.0012425	2.5456	0.0011869	466.26130268026725	30.097	0.29913	30.097	29.986	30.285	0					7	5	2	0	0	0	0.028476	1	1116	1116		13.775	0	1	8143.8	+		42392	24974	35010	35033	45859	45859					0.035517401944161975
PFTSKKTKT	9	Unmodified	_PFTSKKTKT_					0	0	0		Tigger1_dup9834|chr14:19106484-19106883:-|1.64118294126502|0.2064126540684672|2.99|422.0|5|1|sense;Tigger1_dup11946|chr22:15828868-15829349:-|2.0143775268303656|0.126984307270513|3.99|417.0|5|1|sense	Tigger1_dup9834|chr14:19106484-19106883:-|1.64118294126502|0.2064126540684672|2.99|422.0|5|1|sense	Tigger1_dup9834|chr14:19106484-19106883:-|1.64118294126502|0.2064126540684672|2.99|422.0|5|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.7618408203125	2	519.303124	1036.5917	1.1385	0.00059124	-2.7259	-0.0014156	-1.5874	-0.00082435	519.8030124352038	118.8	0.84848	118.8	118.49	119.33	0					47	17	4	0	0	0	0.027462	1	13586	13586		26.693	0	1	488300			42393	32954	35011	35034	45860	45860					0.07486315994378856
PFTVSIDEI	9	Unmodified	_PFTVSIDEI_					0	0	0		ENSG00000244462|ENST00000374114|RBM12	ENSG00000244462|ENST00000374114|RBM12	ENSG00000244462|ENST00000374114|RBM12	MULTI-MSMS	OvCa99_classI_Rep5	1	510.7646179199219	2	510.76604	1019.51753	-0.42696	-0.00021808	-2.2866	-0.0011679	-2.7136	-0.001386	510.7647538983328	29.263	0.59898	29.263	29.037	29.636	0					28	11	4	0	0	0	0.53957	1	1024	1024		38.806	0	1	418900			42394	9396	35012	35035	45861	45861					0.008549281121759122
PFTVSYDKEK	10	Unmodified	_PFTVSYDKEK_					0	0	0		tr|A0A7D7A4R4|A0A7D7A4R4_9CLOTnon-reducingendalpha-L-arabinofuranosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02860PE=3SV=1	tr|A0A7D7A4R4|A0A7D7A4R4_9CLOTnon-reducingendalpha-L-arabinofuranosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02860PE=3SV=1	tr|A0A7D7A4R4|A0A7D7A4R4_9CLOTnon-reducingendalpha-L-arabinofuranosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02860PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	607.3109130859375	2	607.308603	1212.60265	1.197	0.00072693	2.3368	0.0014191	3.5337	0.0021461	607.3099558090541	89.383	2.1504	87.252	86.315	88.465	-2.1309					113	42	3	0	0	0	0.69073	1	5492	5492		31.53	0	1	757940			42395	36153	35013	35036	45862	45862					0.004856735779867449
PFVDHVFTF	9	Unmodified	_PFVDHVFTF_					0	0	0		ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	ENSG00000113460|ENST00000336767|BRIX1	MULTI-MSMS	OvCa99_classI_Rep5	1	554.7782592773438	2	554.776742	1107.53893	1.3939	0.00077333	0.40831	0.00022652	1.8022	0.00099985	554.7768599295101	124.63	1.1234	124.63	124.33	125.45	0					84	26	5	0	0	0	0.0083719	3	14395	14395;14419;14444		177.71	98.256	1	5621100			42396	2974	35014	35037	45863;45864;45865	45863					-0.010536420684275072
PFVFVLSPL	9	Unmodified	_PFVFVLSPL_					0	0	0		ENST00000442760.2_1_13:45914489-45915204:-|nuORF	ENST00000442760.2_1_13:45914489-45915204:-|nuORF	ENST00000442760.2_1_13:45914489-45915204:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	509.803466796875	2	509.802229	1017.5899	-0.41042	-0.00020923	3.4351	0.0017512	3.0247	0.001542	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.61208	1	13468	13468		30.504	2.6214	1	150140			42397	11947	35015	35038	45866	45866					0.08181306976428004
PFVKRKVVK	9	Unmodified	_PFVKRKVVK_					0	0	0			REV__tr|A0A553SHC3|A0A553SHC3_NIACITranscriptiontermination/antiterminationproteinNusGOS=NialliacirculansOX=1397GN=nusGPE=3SV=1	REV__tr|A0A553SHC3|A0A553SHC3_NIACITranscriptiontermination/antiterminationproteinNusGOS=NialliacirculansOX=1397GN=nusGPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.8001708984375	2	550.868769	1099.72298	-0.5306	-0.00029229	3.3504	0.0018456	2.8198	0.0015533	550.8703896147842	41.256	0.27122	41.256	41.104	41.375	0					11	5	3	0	0	0	0.027462	1	2569	2569		44.117	12.162	1	28142	+		42398	29790	35016	35039	45867	45867					0.17711171152927818
PFVLLKTNN	9	Unmodified	_PFVLLKTNN_					0	0	0			REV__tr|A0A7D6ZIZ6|A0A7D6ZIZ6_9CLOTGlutamine-dependentNAD(+)synthetaseOS=ClostridiumintestinaleOX=36845GN=nadEPE=3SV=1	REV__tr|A0A7D6ZIZ6|A0A7D6ZIZ6_9CLOTGlutamine-dependentNAD(+)synthetaseOS=ClostridiumintestinaleOX=36845GN=nadEPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	523.30322265625	2	523.305667	1044.59678	-2.1227	-0.0011108	-1.8084	-0.00094634	-3.9311	-0.0020572	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.69403	1	11311	11311		19.997	0.6368	1	183010	+		42399	32073	35017	35040	45868	45868					0.0762661985700106
PFVMQVIQL	9	Unmodified	_PFVMQVIQL_					0	0	0			REV__tr|A0A553SQA8|A0A553SQA8_NIACITransglycosylaseSLTdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24400PE=4SV=1	REV__tr|A0A553SQA8|A0A553SQA8_NIACITransglycosylaseSLTdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24400PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	537.807373046875	2	537.804445	1073.59434	0.71361	0.00038378	2.0822	0.0011198	2.7958	0.0015036	537.8055946767985	98.053	1.9972	96.293	95.913	97.91	-1.7595					103	38	3	0	0	0	0.21395	1	6547	6547		73.975	8.5094	1	609940	+		42400	30618	35018	35041	45869	45869					0.06048448127694428
PFVSLGRVL	9	Unmodified	_PFVSLGRVL_					0	0	0		ENST00000570699.1_1_17:636236-644807:+|nuORF;ENSG00000167695|ENST00000308278|TLCD3A	ENST00000570699.1_1_17:636236-644807:+|nuORF	ENST00000570699.1_1_17:636236-644807:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	494.3008117675781	2	494.302927	986.591301	-5.5844	-0.0027604	1.3123	0.0006487	-4.2721	-0.0021117	494.3034903870968	153.96	1.4815	152.95	152.62	154.1	-1.0076					78	30	5	0	0	0	0.6959	1	13236	13236		19.36	1.0356	1	602630			42401	6833	35019	35042	45870	45870					0.09746941065179726
PFVTKGLRH	9	Unmodified	_PFVTKGLRH_					0	0	0			REV__HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|74|3|sense	REV__HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|74|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2994384765625	2	527.811451	1053.60835	-0.095845	-5.0588E-05	2.281	0.0012039	2.1851	0.0011533	527.8127005910294	31.908	0.34735	31.908	31.757	32.105	0					10	6	2	0	0	0	0.027462	1	1336	1336		37.159	0	1	40634	+		42402	16092	35020	35043	45871	45871					0.08368861670965089
PFWPAERA	8	Unmodified	_PFWPAERA_					0	0	0			REV__ENST00000317008.4_1_18:77401988-77439691:-|nuORF	REV__ENST00000317008.4_1_18:77401988-77439691:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.28863525390625	2	487.248152	972.481751	-0.69324	-0.00033778	-3.1278	-0.001524	-3.821	-0.0018618	487.24626464923136	48.501	0.62108	45.393	45.192	45.814	-3.1077					22	11	3	0	0	0	0.028476	1	2725	2725		28.254	1.4582	1	33054	+		42403	24409	35021	35044	45872	45872					-0.005590645541587946
PFWPLLLLF	9	Unmodified	_PFWPLLLLF_					0	0	0			REV__ENSG00000103335|ENST00000301015|PIEZO1	REV__ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	OvCa99_classI_Rep5	1	573.3353271484375	2	573.341521	1144.66849	0.84135	0.00048238	-2.341	-0.0013422	-1.4997	-0.00085982	573.3400460164405	154.07	1.5876	154.07	153.69	155.27	0					88	31	4	0	0	0	0.42921	1	18060	18060		49.211	5.094	1	150510	+		42404	17612	35022	35045	45873	45873					0.10194159281513748
PFWQDTAF	8	Unmodified	_PFWQDTAF_					0	0	0		nc|ENSG00000104055|O43548-2|TGM5;ENSG00000104055|ENST00000220420|TGM5	nc|ENSG00000104055|O43548-2|TGM5	nc|ENSG00000104055|O43548-2|TGM5	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.2709045410156	2	506.232168	1010.44978	2.7413	0.0013877	-0.42169	-0.00021347	2.3196	0.0011743	506.23140217522393	90.308	0.28048	90.308	90.101	90.382	0					9	6	2	0	0	0	0.028476	1	9661	9661		37.028	1.4102	1	150100			42405	2349	35023	35046	45874	45874					-0.0550247702796014
PFWQDTAF	8	Unmodified	_PFWQDTAF_					0	0	0		nc|ENSG00000104055|O43548-2|TGM5;ENSG00000104055|ENST00000220420|TGM5	nc|ENSG00000104055|O43548-2|TGM5	nc|ENSG00000104055|O43548-2|TGM5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	506.232168	1010.44978	0.8588	0.00043475	-0.17326	-8.7709E-05	0.68554	0.00034704	506.2320096751544	91.196	0.53059	89.96	89.742	90.272	-1.2355	-0.17394	5.4813E-05	NaN	37.028	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16546			42406	2349	35023	35046							-0.0550247702796014
PFYKALVAV	9	Unmodified	_PFYKALVAV_					0	0	0			REV__nc|ENSG00000116260|O00391-2|QSOX1	REV__nc|ENSG00000116260|O00391-2|QSOX1	MULTI-MSMS	OvCa9_classI_Rep2	2	504.2980041503906	2	504.299853	1006.58515	-1.2162	-0.00061332	-3.1624	-0.0015948	-4.3786	-0.0022081	504.29821756982153	103.35	3.6196	102.66	102.28	105.9	-0.68459					195	72	4	0	0	0	0.25214	2	9550	9531;9550		68.485	22.512	1	812500	+		42407	18296	35024	35047	45875;45876	45876					0.0821242283365109
PFYKALVAV	9	Unmodified	_PFYKALVAV_					0	0	0			REV__nc|ENSG00000116260|O00391-2|QSOX1	REV__nc|ENSG00000116260|O00391-2|QSOX1	MULTI-MSMS	OvCa9_classI_Rep3	3	504.2978210449219	2	504.299853	1006.58515	-0.082287	-4.1497E-05	-4.349	-0.0021932	-4.4313	-0.0022347	504.2976378271559	104.41	3.9037	102.97	102.5	106.4	-1.4347					184	75	5	0	0	0	0.11842	1	7266	7266		92.191	31.897	1	927760	+		42408	18296	35024	35047	45877	45877					0.0821242283365109
PFYKALVAV	9	Unmodified	_PFYKALVAV_					0	0	0			REV__nc|ENSG00000116260|O00391-2|QSOX1	REV__nc|ENSG00000116260|O00391-2|QSOX1	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.2978515625	2	504.299853	1006.58515	-0.73291	-0.00036961	-3.7994	-0.0019161	-4.5323	-0.0022857	504.2978909366257	105.14	3.2976	103.13	102.58	105.88	-2.0161					166	64	4	0	0	0	0.44294	1	9520	9520		47.916	1.9434	1	823080	+		42409	18296	35024	35047	45878	45878					0.0821242283365109
PFYQWMDTE	9	Unmodified	_PFYQWMDTE_					0	0	0		ENSG00000157227|ENST00000311852|MMP14	ENSG00000157227|ENST00000311852|MMP14	ENSG00000157227|ENST00000311852|MMP14	MULTI-SECPEP	OvCa99_classI_Rep5	1	609.3084106445312	2	608.752607	1215.49066	2.2371	0.0013619	3.3905	0.002064	5.6276	0.0034258	608.7544648700839	117.9	0.55626	117.9	117.51	118.06	0					17	11	2	0	0	0	0.027462	1	13515	13515		33.516	3.0119	1	62246			42410	5885	35025	35048	45879	45879					-0.10846503770653726
PGAAARRL	8	Unmodified	_PGAAARRL_					0	0	0		TRIM71|p.A317Dfs*25|1|0.07|ENSG00000206557|chr3:32873915-32873915|C/-|frameshift_variant;ENSG00000206557|ENST00000383763|TRIM71	TRIM71|p.A317Dfs*25|1|0.07|ENSG00000206557|chr3:32873915-32873915|C/-|frameshift_variant	TRIM71|p.A317Dfs*25|1|0.07|ENSG00000206557|chr3:32873915-32873915|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	406.2482604980469	2	406.248486	810.48242	0.12737	5.1745E-05	0.179	7.2718E-05	0.30637	0.00012446	406.2484453732125	140.19	2.0181	139.96	139.4	141.42	-0.22697					109	40	4	0	0	0	0.74816	1	14037	14037		15.636	0.97212	1	304300			42411	9102	35026	35049	45880	45880					0.06959774885547176
PGAAPPGG	8	Unmodified	_PGAAPPGG_					0	0	0		ENST00000540643.5_2_22:32009350-32009709:+|nuORF	ENST00000540643.5_2_22:32009350-32009709:+|nuORF	ENST00000540643.5_2_22:32009350-32009709:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	622.83447265625	1	623.314751	622.307475	-0.62906	-0.0003921	1.9435	0.0012114	1.3144	0.00081928	623.3151553572364	55.702	0.41183	55.702	55.52	55.932	0					10	9	2	0	0	0	0.028476	1	4578	4578		24.504	0	1	257590			42412	13454	35027	35050	45881	45881					-0.01878644979467481
PGAARLRA	8	Unmodified	_PGAARLRA_					0	0	0			REV__ENST00000340880.4_1_19:15579558-15582790:-|nuORF	REV__ENST00000340880.4_1_19:15579558-15582790:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	406.2482604980469	2	406.248486	810.48242	0.12737	5.1745E-05	0.179	7.2718E-05	0.30637	0.00012446	406.2484453732125	140.19	2.0181	139.96	139.4	141.42	-0.22697					109	40	4	0	0	0	0.75991	1	14055	14055		21.702	1.2205	1	304300	+		42413	24628	35028	35051	45882	45882					0.06959774885547176
PGAARRVL	8	Unmodified	_PGAARRVL_					0	0	0		ENST00000322147.8_2_11:65306929-65307783:-|nuORF;ENST00000529582.5_1_11:65306929-65307783:-|nuORF	ENST00000322147.8_2_11:65306929-65307783:-|nuORF	ENST00000322147.8_2_11:65306929-65307783:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	420.2413330078125	2	420.264136	838.51372	-0.70349	-0.00029565	-0.41367	-0.00017385	-1.1172	-0.0004695	420.26383229182795	58.515	0.90253	55.123	54.952	55.854	-3.392					27	17	3	0	0	0	0.028476	1	3915	3915		23.037	14.214	1	37077			42414	10382	35029	35052	45883	45883					0.08800347919645901
PGADPAKSVI	10	Unmodified	_PGADPAKSVI_					0	0	0		ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	MULTI-SECPEP	OvCa9_classI_Rep2	2	476.7828369140625	2	477.766374	953.518196	0.53992	0.00025796	0.043576	2.0819E-05	0.5835	0.00027878	477.76596406866537	42.92	0.49334	40.21	40.016	40.509	-2.7097					12	9	2	0	0	0	0.026681	1	2369	2369		36.447	0	1	8359.8			42415	7871	35030	35053	45884	45884					0.0395776755190127
PGAGGPPAAK	10	Unmodified	_PGAGGPPAAK_					0	0	0			REV__ENST00000489266.5_1_10:123734227-123734680:-|nuORF	REV__ENST00000489266.5_1_10:123734227-123734680:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.7040100097656	2	411.727052	821.439552	0.48272	0.00019875	0.8471	0.00034877	1.3298	0.00054752	411.72684253203363	33.705	0.83105	33.705	33.186	34.017	0					23	16	2	0	0	0	0.026665	1	1568	1568		34.173	7.3764	1	41727	+		42416	26636	35031	35054	45885	45885					0.021689600374656948
PGAPALPSH	9	Unmodified	_PGAPALPSH_					0	0	0		nc|nan|Q6P1X6-2|C8orf82;ENST00000313465.5_2_8:145752728-145753355:-|nuORF;ENSG00000213563|ENST00000524821|C8orf82	nc|nan|Q6P1X6-2|C8orf82	nc|nan|Q6P1X6-2|C8orf82	MULTI-SECPEP	OvCa9_classI_Rep2	2	424.2576904296875	2	423.727052	845.439552	-1.05	-0.00044491	1.5336	0.00064984	0.48362	0.00020492	423.72750199263	54.331	1.0974	51.517	51.175	52.272	-2.8139					47	21	3	0	0	0	0.027425	1	3726	3726		60.294	0	1	142610			42417	9135	35032	35055	45886	45886					0.010649600374676993
PGAPALPSH	9	Unmodified	_PGAPALPSH_					0	0	0		nc|nan|Q6P1X6-2|C8orf82;ENST00000313465.5_2_8:145752728-145753355:-|nuORF;ENSG00000213563|ENST00000524821|C8orf82	nc|nan|Q6P1X6-2|C8orf82	nc|nan|Q6P1X6-2|C8orf82	MULTI-MSMS	OvCa9_classI_Rep4_	4	423.72784423828125	2	423.727052	845.439552	-1.0157	-0.00043037	1.0085	0.00042733	-0.0071629	-3.0351E-06	423.72739517501793	54.505	1.3801	51.258	50.927	52.307	-3.2474					82	26	4	0	0	0	0.073432	3	3386	3386;3399;3413		105.27	14.802	1	836580			42418	9135	35032	35055	45887;45888;45889	45887					0.010649600374676993
PGAPECLLLAG	11	Unmodified	_PGAPECLLLAG_					0	0	0			REV__ENSG00000175536|ENST00000310109|LIPT2	REV__ENSG00000175536|ENST00000310109|LIPT2	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.3011474609375	2	520.775885	1039.53722	-0.39644	-0.00020646	-2.6107	-0.0013596	-3.0072	-0.0015661	520.7738447849998	81.425	1.4192	79.102	78.543	79.962	-2.3226					71	27	4	0	0	0	0.024694	1	4615	4615		58.782	0	1	331120	+		42419	21904	35033	35056	45890	45890					0.019029808513096214
PGAPFTNYMS	10	Unmodified	_PGAPFTNYMS_					0	0	0		PAPPA2|p.N1535Tfs*51|1|0.11|ENSG00000116183|chr1:176771068-176771069|-/CCCATCTCAACTCAGGCAAAGGAATGTCC|frameshift_variant;nc|ENSG00000116183|Q9BXP8-2|PAPPA2;PAPPA2|p.V1663Nfs*17|1|0.4|ENSG00000116183|chr1:176791449-176791458|GTGGAGTACA/-|frameshift_variant;ENSG00000116183|ENST00000367662|PAPPA2	PAPPA2|p.N1535Tfs*51|1|0.11|ENSG00000116183|chr1:176771068-176771069|-/CCCATCTCAACTCAGGCAAAGGAATGTCC|frameshift_variant	PAPPA2|p.N1535Tfs*51|1|0.11|ENSG00000116183|chr1:176771068-176771069|-/CCCATCTCAACTCAGGCAAAGGAATGTCC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	542.7407836914062	2	542.742042	1083.46953	-0.90016	-0.00048856	-1.8752	-0.0010177	-2.7753	-0.0015063	542.7409557412567	26.852	0.5493	26.852	26.692	27.241	0					16	10	2	0	0	0	0.77834	1	746	746		21.686	0.73882	1	66762			42420	15474	35034	35057	45891	45891					-0.06886469079518065
PGAPGVARP	9	Unmodified	_PGAPGVARP_					0	0	0			REV__ENST00000345617.7_1_2:240274529-240322319:-|nuORF	REV__ENST00000345617.7_1_2:240274529-240322319:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	411.236083984375	2	411.235045	820.455536	0.87297	0.000359	-0.75651	-0.0003111	0.11646	4.7891E-05	411.234554217796	56.93	1.5778	53.585	53.12	54.698	-3.3449					68	30	4	0	0	0	0.42057	1	3681	3681		50.025	2.1089	1	487540	+		42421	24693	35035	35058	45892	45892					0.03812666274370713
PGAPKRTP	8	Unmodified	_PGAPKRTP_					0	0	0		ENST00000550560.1_1_19:58512579-58514018:-|nuORF	ENST00000550560.1_1_19:58512579-58514018:-|nuORF	ENST00000550560.1_1_19:58512579-58514018:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.70391845703125	2	412.24287	822.471186	0.78354	0.00032301	-0.068963	-2.8429E-05	0.71458	0.00029458	412.2427400599352	33.261	0.29774	33.261	33.136	33.434	0					8	5	2	0	0	0	0.028476	1	1519	1519		27.882	4.8398	1	54996			42422	13590	35036	35059	45893	45893					0.05284952791430442
PGAQLCTVYY	10	Unmodified	_PGAQLCTVYY_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.7636108398438	2	557.765517	1113.51648	-0.29381	-0.00016388	-2.7115	-0.0015124	-3.0053	-0.0016763	557.7639087775158	99.968	1.2751	97.642	97.366	98.641	-2.3253					84	24	4	0	0	0	0.50999	1	8946	8946		52.937	8.8199	1	768980			42423	7034	35037	35060	45894	45894					-0.03573609528348243
PGARGRKVV	9	Unmodified	_PGARGRKVV_					0	0	0		chr19:17059098-17059557|192|32.51|0.57|5.84|-|2|None,HAUS8|1	chr19:17059098-17059557|192|32.51|0.57|5.84|-|2|None,HAUS8|1	chr19:17059098-17059557|192|32.51|0.57|5.84|-|2|None,HAUS8|1	MULTI-MSMS	OvCa9_classI_Rep2	2	470.2956848144531	2	470.295968	938.577383	-0.49251	-0.00023162	-0.04838	-2.2753E-05	-0.54089	-0.00025438	470.29591238963496	32.315	1.7376	29.606	29.382	31.119	-2.7097					90	34	5	0	0	0	0.69895	1	1047	1047		18.324	0	1	1326000			42424	405	35038	35061	45895	45895					0.10563708356744428
PGAVRILLAE	10	Unmodified	_PGAVRILLAE_					0	0	0		nc|ENSG00000148204|Q5IJ48-3|CRB2;chr9:123368946-123370108|392|18.4|0.6|4.94|+|ENST00000460253|CRB2,CRB2;nc|ENSG00000148204|Q5IJ48-2|CRB2;ENSG00000148204|ENST00000373631|CRB2	nc|ENSG00000148204|Q5IJ48-3|CRB2	nc|ENSG00000148204|Q5IJ48-3|CRB2	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.3026123046875	2	519.818941	1037.62333	1.2429	0.00064611	-2.3716	-0.0012328	-1.1287	-0.00058671	519.8174539061032	66.007	1.1919	63.311	62.972	64.164	-2.6958					35	23	2	0	0	0	0.027021	1	5083	5083		37.159	14.117	1	49278			42425	551	35039	35062	45896	45896					0.10602308748320866
PGDSDHGTSDL	11	Unmodified	_PGDSDHGTSDL_					0	0	0		ENSG00000196152|ENST00000342483|ZNF79	ENSG00000196152|ENST00000342483|ZNF79	ENSG00000196152|ENST00000342483|ZNF79	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.7274780273438	2	550.728175	1099.4418	-0.82741	-0.00045568	-0.92629	-0.00051013	-1.7537	-0.00096581	550.7273509139382	120.77	1.3815	119.42	119.13	120.51	-1.3479					63	26	4	0	0	0	0.65947	1	11367	11367		39.253	7.298	1	196810			42426	8569	35040	35063	45897	45897					-0.10394700806023138
PGDSDHGTSDL	11	Unmodified	_PGDSDHGTSDL_					0	0	0		ENSG00000196152|ENST00000342483|ZNF79	ENSG00000196152|ENST00000342483|ZNF79	ENSG00000196152|ENST00000342483|ZNF79	MULTI-MATCH	OvCa9_classI_Rep2	2		2	550.728175	1099.4418	-0.86526	-0.00047652	-0.97905	-0.00053919	-1.8443	-0.0010157	550.7274217604709	119.84	1.1848	119.67	119.3	120.48	-0.17138	0.15438	0.00042894	NaN	39.253	73	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89305			42427	8569	35040	35063							-0.10394700806023138
PGELLTLI	8	Unmodified	_PGELLTLI_					0	0	0		SLC26A6|p.T615Sfs*6|1|0.07|ENSG00000225697|chr3:48627995-48627996|-/CTACAGC|frameshift_variant;SLC26A6|p.L617Gfs*9|1|0.16|ENSG00000225697|chr3:48627993-48627994|-/CACCCCTGACCTCCACCCCTGA|frameshift_variant;nc|ENSG00000225697|Q9BXS9-6|SLC26A6;nc|ENSG00000225697|Q9BXS9-7|SLC26A6;nc|ENSG00000225697|Q9BXS9-4|SLC26A6;nc|ENSG00000225697|Q9BXS9-2|SLC26A6;nc|ENSG00000225697|Q9BXS9-3|SLC26A6;ENSG00000225697|ENST00000395550|SLC26A6	SLC26A6|p.T615Sfs*6|1|0.07|ENSG00000225697|chr3:48627995-48627996|-/CTACAGC|frameshift_variant	SLC26A6|p.T615Sfs*6|1|0.07|ENSG00000225697|chr3:48627995-48627996|-/CTACAGC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	428.2610778808594	2	428.262936	854.51132	-2.5111	-0.0010754	-0.44999	-0.00019271	-2.9611	-0.0012681	428.26264584865925	144.43	1.5889	143.46	143.1	144.69	-0.97301					79	31	4	0	0	0	0.75915	1	12036	12036		20.482	0	1	839380			42428	9264	35041	35064	45898	45898					0.0782445467133357
PGGAAAAK	8	Unmodified	_PGGAAAAK_					0	0	0			REV__ENST00000430109.1_1_1:1369598-1369895:-|nuORF	REV__ENST00000430109.1_1_1:1369598-1369895:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	641.3853759765625	1	642.356951	641.349674	-6.9815	-0.0044846	0.54962	0.00035305	-6.4319	-0.0041316	642.3526680361753	161.23	0.96638	159.86	159.23	160.19	-1.3692					23	18	2	0	0	0	0.028476	1	14034	14034		21.702	7.0382	1	5782.6	+		42429	25708	35042	35065	45899	45899					0.014653304288913205
PGGAAGAL	8	Unmodified	_PGGAAGAL_					0	0	0			REV__ENSG00000125835|ENST00000381342|SNRPB	REV__ENSG00000125835|ENST00000381342|SNRPB	MULTI-SECPEP	OvCa99_classI_Rep5	1	614.2944946289062	1	613.330402	612.323125	1.3391	0.00082132	-0.34361	-0.00021075	0.9955	0.00061057	613.3302188443265	144.51	0.58177	144.51	144.21	144.79	0					16	11	2	0	0	0	0.028476	1	16913	16913		24.504	0	1	35127	+		42430	18751	35043	35066	45900	45900					0.0014564153756282394
PGGLAGLG	8	Unmodified	_PGGLAGLG_					0	0	0		chr11:64284376-64284470|105|21.4|0.19|6.79|-|1|BAD,None|1	chr11:64284376-64284470|105|21.4|0.19|6.79|-|1|BAD,None|1	chr11:64284376-64284470|105|21.4|0.19|6.79|-|1|BAD,None|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	640.7874145507812	1	641.361702	640.354425	1.8481	0.0011853	-2.6238	-0.0016828	-0.77567	-0.00049749	641.3626157076915	119.79	0.65953	119.79	119.52	120.18	0					28	15	3	0	0	0	0.028476	1	13780	13780		16.705	6.5202	1	267430			42431	295	35044	35067	45901	45901					0.019862145716615487
PGGLVWTCLP	10	Unmodified	_PGGLVWTCLP_					0	0	0		chr7:5598554-5603257|93|10.69|0.03|8.74|+|0|None,FSCN1|1	chr7:5598554-5603257|93|10.69|0.03|8.74|+|0|None,FSCN1|1	chr7:5598554-5603257|93|10.69|0.03|8.74|+|0|None,FSCN1|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.811767578125	2	521.773145	1041.53174	-0.86686	-0.0004523	2.0741	0.0010822	1.2072	0.00062991	521.7744419003868	67.972	0.63911	65.311	65.09	65.729	-2.661					19	12	3	0	0	0	0.026697	1	5325	5325		29.15	12.432	1	20813			42432	528	35045	35068	45902	45902					0.012633020594876143
PGGMRLWASER	11	Unmodified	_PGGMRLWASER_					0	0	0		ENST00000399799.2_1_18:18691022-18691112:-|nuORF	ENST00000399799.2_1_18:18691022-18691112:-|nuORF	ENST00000399799.2_1_18:18691022-18691112:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	630.3206787109375	2	630.319314	1258.62407	1.9537	0.0012315	2.3905	0.0015068	4.3442	0.0027382	630.3206045610677	137.99	0.6609	136.46	136.22	136.88	-1.5284					26	15	2	0	0	0	0.68021	1	13416	13416		36.447	1.2947	1	45365			42433	11400	35046	35069	45903	45903					0.005107801257281608
PGGMRLWASER	11	Unmodified	_PGGMRLWASER_					0	0	0		ENST00000399799.2_1_18:18691022-18691112:-|nuORF	ENST00000399799.2_1_18:18691022-18691112:-|nuORF	ENST00000399799.2_1_18:18691022-18691112:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	630.319314	1258.62407	-1.2384	-0.00078058	6.0653	0.003823	4.8269	0.0030425	630.3229597462434	137.02	0.63197	136.8	136.55	137.18	-0.22697	0.2046	0.0018796	NaN	36.447	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34913			42434	11400	35046	35069							0.005107801257281608
PGGMRLWASER	11	Unmodified	_PGGMRLWASER_					0	0	0		ENST00000399799.2_1_18:18691022-18691112:-|nuORF	ENST00000399799.2_1_18:18691022-18691112:-|nuORF	ENST00000399799.2_1_18:18691022-18691112:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	630.319314	1258.62407	-0.91848	-0.00057894	5.0385	0.0031759	4.1201	0.002597	630.3222629671925	137.6	0.72951	136.52	136.24	136.97	-1.0858	-0.073664	0.0005853	NaN	36.447	27	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32184			42435	11400	35046	35069							0.005107801257281608
PGGPKISKK	9	Unmodified	_PGGPKISKK_					0	0	0		nc|ENSG00000095637|Q9BX66-11|SORBS1;ENSG00000095637|ENST00000371247|SORBS1;nc|ENSG00000095637|Q9BX66-2|SORBS1	nc|ENSG00000095637|Q9BX66-11|SORBS1	nc|ENSG00000095637|Q9BX66-11|SORBS1	MULTI-MSMS	OvCa9_classI_Rep2	2	456.2863464355469	2	456.287277	910.560001	4.1276	0.0018834	-4.1915	-0.0019125	-0.063884	-2.915E-05	456.2852328717181	26.379	0.62901	23.669	23.468	24.097	-2.7097					27	15	2	0	0	0	0.65476	1	361	361		25.45	0	1	26563			42436	1936	35047	35070	45904	45904					0.10114368031076992
PGGRPAPR	8	Unmodified	_PGGRPAPR_					0	0	0		nc|ENSG00000197114|Q8N5A5-4|ZGPAT;nc|ENSG00000197114|Q8N5A5-3|ZGPAT;ENSG00000197114|ENST00000355969|ZGPAT;nc|ENSG00000197114|Q8N5A5|ZGPAT	nc|ENSG00000197114|Q8N5A5-4|ZGPAT	nc|ENSG00000197114|Q8N5A5-4|ZGPAT	MULTI-MSMS	OvCa9_classI_Rep4_	4	404.2330017089844	2	404.232836	806.45112	4.3532	0.0017597	-4.1053	-0.0016595	0.24788	0.0001002	404.23103020545994	135.7	1.0357	134.16	133.81	134.84	-1.5437					47	20	3	0	0	0	0.74595	1	13152	13152		14.664	0	1	317610			42437	8678	35048	35071	45905	45905					0.04015201851461825
PGGVCISSPPS	11	Unmodified	_PGGVCISSPPS_					0	0	0		ENSG00000131504|ENST00000389054|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1	ENSG00000131504|ENST00000389054|DIAPH1	ENSG00000131504|ENST00000389054|DIAPH1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.2950439453125	2	500.742042	999.469531	-0.81883	-0.00041003	-2.5285	-0.0012661	-3.3473	-0.0016761	500.74060112892175	37.505	0.64722	37.505	37.159	37.806	0					30	13	3	0	0	0	0.025681	1	2093	2093		26.693	4.733	1	277130			42438	4073	35049	35072	45906	45906					-0.03022469079496659
PGHVLGMI	8	Unmodified	_PGHVLGMI_					0	0	0			REV__ENSG00000033011|ENST00000262374|ALG1	REV__ENSG00000033011|ENST00000262374|ALG1	MULTI-MSMS	OvCa99_classI_Rep5	1	412.2281188964844	2	412.228374	822.442194	2.2605	0.00093185	-3.7595	-0.0015498	-1.4989	-0.00061791	412.22669256697355	130.91	1.0458	130.91	130.53	131.58	0					48	21	3	0	0	0	0.7363	1	15207	15207		33.493	8.989	1	473200	+		42439	16591	35050	35073	45907	45907					0.023870921707839443
PGIERVETN	9	Unmodified	_PGIERVETN_					0	0	0			REV__nc|ENSG00000135333|Q15375-3|EPHA7	REV__nc|ENSG00000135333|Q15375-3|EPHA7	MULTI-MSMS	OvCa9_classI_Rep3	3	507.7664794921875	2	507.764363	1013.51417	-0.36325	-0.00018445	4.3065	0.0021867	3.9433	0.0020023	507.76638761877894	131.88	1.6751	130.75	129.96	131.63	-1.1249					88	33	4	0	0	0	0.64427	1	10510	10510		26.693	1.1189	1	127470	+		42440	19275	35051	35074	45908	45908					0.007956780581935163
PGIWGARW	8	Unmodified	_PGIWGARW_					0	0	0			REV__nc|ENSG00000240747|C9JBD0-2|KRBOX1	REV__nc|ENSG00000240747|C9JBD0-2|KRBOX1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.75653076171875	2	471.750862	941.487171	1.0617	0.00050085	1.6801	0.00079258	2.7418	0.0012934	471.751228839867	60.457	1.4846	57.027	56.21	57.694	-3.43					37	29	2	0	0	0	0.028476	1	4064	4064		28.254	14.479	1	48711	+		42441	29156	35052	35075	45909	45909					0.014086590283227451
PGKIIVAAM	9	Unmodified	_PGKIIVAAM_					0	0	0		tr|A0A7D7A2G1|A0A7D7A2G1_9CLOTinorganicdiphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_16750PE=4SV=1	tr|A0A7D7A2G1|A0A7D7A2G1_9CLOTinorganicdiphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_16750PE=4SV=1	tr|A0A7D7A2G1|A0A7D7A2G1_9CLOTinorganicdiphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_16750PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	450.2745056152344	2	450.272781	898.531009	-0.13529	-6.0919E-05	4.3545	0.0019607	4.2192	0.0018998	450.27464677011136	147.54	1.7967	147.31	146.82	148.62	-0.22696					100	35	5	0	0	0	0.64339	1	14914	14914		26.796	5.0938	1	344090			42442	36076	35053	35076	45910	45910					0.07768507410446546
PGKKIETRRGP	11	Unmodified	_PGKKIETRRGP_					0	0	0			REV__ENST00000370620.5_1_X:135750233-135750308:-|nuORF	REV__ENST00000370620.5_1_X:135750233-135750308:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	619.868408203125	2	619.870028	1237.7255	-3.8587	-0.0023919	2.9348	0.0018192	-0.92393	-0.00057272	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.72473	1	15525	15525		19.104	5.6495	1	492670	+		42443	24965	35054	35077	45911	45911					0.11614974819917734
PGKKVEPVPVT	11	Unmodified	_PGKKVEPVPVT_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8435668945312	2	575.845156	1149.67576	-0.33973	-0.00019563	-2.5857	-0.0014889	-2.9254	-0.0016846	575.8433458482052	142.38	3.7668	140.93	139.05	142.82	-1.4532					179	72	3	0	0	0	0.71789	1	13950	13950		23.523	0.48021	1	165140			42444	3800	35055	35078	45912	45912					0.10690847091268552
PGKLAVTRI	9	Unmodified	_PGKLAVTRI_					0	0	0			REV__ENSG00000065268|ENST00000585809|WDR18	REV__ENSG00000065268|ENST00000585809|WDR18	MULTI-MSMS	OvCa9_classI_Rep3	3	477.8076477050781	2	477.808377	953.6022	1.4028	0.00067027	-1.4022	-0.00066999	0.00057516	2.7482E-07	477.80751727561267	67.965	1.6502	65.078	64.789	66.439	-2.8873					73	32	4	0	0	0	0.66262	1	2928	2928		24.519	0	1	189830	+		42445	16789	35056	35079	45913	45913					0.12354343439449167
PGKPILPVQTG	11	Unmodified	_PGKPILPVQTG_					0	0	0		SLC9A8|p.S492Rfs*44|1|0.46|ENSG00000197818|chr20:49884051-49884051|C/-|frameshift_variant;ENSG00000197818|ENST00000361573|SLC9A8;nc|ENSG00000197818|Q9Y2E8-2|SLC9A8;ENST00000489787.1_1_20:48429459-48431791:+|nuORF;SLC9A8|p.I227Ffs*10|1|0.14|ENSG00000197818|chr20:49855547-49855547|A/-|frameshift_variant	SLC9A8|p.S492Rfs*44|1|0.46|ENSG00000197818|chr20:49884051-49884051|C/-|frameshift_variant	SLC9A8|p.S492Rfs*44|1|0.46|ENSG00000197818|chr20:49884051-49884051|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8301391601562	2	553.832049	1105.64954	0.13277	7.3535E-05	-3.4573	-0.0019148	-3.3245	-0.0018412	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.7046	1	14062	14062		28.081	3.5623	1	400120			42446	8752	35057	35080	45914	45914					0.10094577919812764
PGKRGRPRK	9	Unmodified	_PGKRGRPRK_					0	0	0		MGA|p.D2061Vfs*3|1|0.09|ENSG00000174197|chr15:41749788-41749789|-/T|frameshift_variant;MGA|p.D2295Tfs*40|1|0.55|ENSG00000174197|chr15:41750489-41750489|T/-|frameshift_variant;ENSG00000174197|ENST00000703841|MGA;nc|ENSG00000174197|Q8IWI9|MGA;nc|ENSG00000174197|Q8IWI9-3|MGA	MGA|p.D2061Vfs*3|1|0.09|ENSG00000174197|chr15:41749788-41749789|-/T|frameshift_variant	MGA|p.D2061Vfs*3|1|0.09|ENSG00000174197|chr15:41749788-41749789|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.3306274414062	2	526.333416	1050.65228	-2.291	-0.0012058	0.6691	0.00035217	-1.6219	-0.00085367	526.3335579094949	147.21	1.1944	145.78	145.58	146.78	-1.4351					55	23	3	0	0	0	0.69895	1	14471	14471		18.324	1.8513	1	87130			42447	7446	35058	35081	45915	45915					0.12897890887961694
PGKRPLLEIG	10	Unmodified	_PGKRPLLEIG_					0	0	0			REV__TATDN1-RNF139|1|fusion	REV__TATDN1-RNF139|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3297119140625	2	540.332216	1078.64988	-1.5762	-0.00085169	-2.2598	-0.001221	-3.836	-0.0020727	540.3309156564876	138.68	4.2384	138.45	137.13	141.37	-0.22697					227	86	3	0	0	0	0.76627	1	13901	13901		23.042	3.0457	1	66382	+		42448	21572	35059	35082	45916	45916					0.1136999763964468
PGKVGVPSVL	10	Unmodified	_PGKVGVPSVL_					0	0	0			REV__ENST00000482818.1_1_22:29724334-29724502:-|nuORF	REV__ENST00000482818.1_1_22:29724334-29724502:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	476.7951965332031	2	476.794935	951.575317	-0.041831	-1.9945E-05	-0.26291	-0.00012536	-0.30474	-0.0001453	476.7946913581807	110.41	1.5792	110.23	109.96	111.54	-0.17237					69	31	3	0	0	0	0.62299	1	10435	10435		39.253	2.0937	1	711390	+		42449	26511	35060	35083	45917	45917					0.09759234828266017
PGKVLIAQLN	10	Unmodified	_PGKVLIAQLN_					0	0	0			REV__tr|A0A553SJ82|A0A553SJ82_NIACITandem-95repeatproteinOS=NialliacirculansOX=1397GN=CEQ21_16265PE=4SV=1	REV__tr|A0A553SJ82|A0A553SJ82_NIACITandem-95repeatproteinOS=NialliacirculansOX=1397GN=CEQ21_16265PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.7631225585938	2	526.826766	1051.63898	-1.0622	-0.00055957	0.79595	0.00041933	-0.2662	-0.00014024	526.8271091348336	121.32	0.88876	121.13	120.61	121.49	-0.19718					20	11	2	0	0	0	0.026635	1	11685	11685		56.721	1.2168	1	21400	+		42450	29977	35061	35084	45918	45918					0.11522595265364544
PGLARPLSL	9	Unmodified	_PGLARPLSL_					0	0	0		ENST00000598046.5_1_19:21512099-21512225:-|nuORF	ENST00000598046.5_1_19:21512099-21512225:-|nuORF	ENST00000598046.5_1_19:21512099-21512225:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	462.28680419921875	2	462.287277	922.560001	-0.082447	-3.8114E-05	-0.18267	-8.4446E-05	-0.26512	-0.00012256	462.2870685327716	97.397	1.6223	96.438	95.97	97.592	-0.95856					88	32	4	0	0	0	0.098892	1	8812	8812		97.473	12.113	1	674170			42451	14194	35062	35085	45919	45919					0.09562368031083679
PGLELHHKEL	10	Unmodified	_PGLELHHKEL_					0	0	0		nc|ENSG00000117114|O95490-2|ADGRL2;nc|ENSG00000117114|O95490-5|ADGRL2;nc|ENSG00000117114|O95490|ADGRL2;nc|ENSG00000117114|O95490-7|ADGRL2;ENSG00000117114|ENST00000686636|ADGRL2;nc|ENSG00000117114|O95490-6|ADGRL2	nc|ENSG00000117114|O95490-2|ADGRL2	nc|ENSG00000117114|O95490-2|ADGRL2	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.8237915039062	2	586.824755	1171.63496	-2.8595	-0.001678	1.0473	0.0006146	-1.8121	-0.0010634	586.8252260558515	149.49	1.5706	148.05	147.61	149.18	-1.4344					87	31	4	0	0	0	0.58067	1	14743	14743		44.377	1.5129	1	272440			42452	3234	35063	35086	45920	45920					0.056005057716674855
PGLERKSFKRS	11	Unmodified	_PGLERKSFKRS_					0	0	0		ENST00000353999.6_1_7:73609594-73609675:+|nuORF	ENST00000353999.6_1_7:73609594-73609675:+|nuORF	ENST00000353999.6_1_7:73609594-73609675:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	435.2467346191406	3	435.585966	1303.73607	-0.61938	-0.00026979	0.12471	5.4321E-05	-0.49467	-0.00021547	435.5861145530948	44.399	0.40754	41.36	41.106	41.514	-3.0385					12	7	2	0	0	0	0.025378	1	2175	2175		36.318	16.003	1	9349			42453	10657	35064	35087	45921	45921					0.09634957474372641
PGLHTGLLAL	10	Unmodified	_PGLHTGLLAL_					0	0	0			REV__ENST00000486187.5_1_10:43078026-43078305:-|nuORF	REV__ENST00000486187.5_1_10:43078026-43078305:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.2995910644531	2	496.300384	990.586216	-0.20996	-0.0001042	-0.013117	-6.5099E-06	-0.22308	-0.00011071	496.30023015612176	123.47	1.2954	122.1	121.8	123.1	-1.3666					64	25	3	0	0	0	0.56767	1	11683	11683		45.952	3.5558	1	220800	+		42454	26582	35065	35088	45922	45922					0.0905463720255284
PGLIGLPGT	9	Unmodified	_PGLIGLPGT_					0	0	0		ENSG00000050767|ENST00000390654|COL23A1	ENSG00000050767|ENST00000390654|COL23A1	ENSG00000050767|ENST00000390654|COL23A1	MULTI-MSMS	OvCa9_classI_Rep2	2	412.7457580566406	2	412.747453	823.480354	0.89602	0.00036983	-3.8761	-0.0015999	-2.9801	-0.00123	412.745727074971	134.3	1.3763	134.07	133.07	134.44	-0.22697					63	27	4	0	0	0	0.63108	1	13305	13305		28.254	2.8041	1	259910			42455	1182	35066	35089	45923	45923					0.06155301357091503
PGLLLRGLVL	10	Unmodified	_PGLLLRGLVL_					0	0	0			REV__sp|Q6SW55|UL87_HCMVMUncharacterizedproteinUL87OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL87PE=3SV=1	REV__sp|Q6SW55|UL87_HCMVMUncharacterizedproteinUL87OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL87PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	525.8543701171875	2	525.855327	1049.6961	0.76961	0.00040471	-1.024	-0.0005385	-0.25443	-0.0001338	525.8546110101726	126.86	1.8772	126.62	126.29	128.17	-0.2359					94	37	4	0	0	0	0.71192	1	12401	12401		29.15	3.5755	1	231030	+		42456	29424	35067	35090	45924	45924					0.17324062541752028
PGLLYGLYQSH	11	Unmodified	_PGLLYGLYQSH_					0	0	0			REV__L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|248|2|anti-sense	REV__L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|248|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	416.5514221191406	3	416.552151	1246.63462	-0.032918	-1.3712E-05	-2.2232	-0.00092607	-2.2561	-0.00093978	416.5511552635991	39.048	1.0924	36.121	35.948	37.04	-2.9264					45	21	3	0	0	0	0.70315	1	1576	1576		28.577	0.93281	1	250100	+		42457	28600	35068	35091	45925	45925					0.021170860517941037
PGLLYGLYQSH	11	Unmodified	_PGLLYGLYQSH_					0	0	0			REV__L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|248|2|anti-sense	REV__L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|248|2|anti-sense	MULTI-MATCH	OvCa9_classI_Rep2	2		3	416.552151	1246.63462	-0.58458	-0.00024351	-2.9044	-0.0012098	-3.489	-0.0014534	416.5505616921193	38.804	0.93974	36.095	35.766	36.706	-2.7097	-0.013301	-0.000825	NaN	28.577	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34123	+		42458	28600	35068	35091							0.021170860517941037
PGLLYGLYQSH	11	Unmodified	_PGLLYGLYQSH_					0	0	0			REV__L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|248|2|anti-sense	REV__L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|248|2|anti-sense	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		3	416.552151	1246.63462	-0.032918	-1.3712E-05	-2.2232	-0.00092607	-2.2561	-0.00093978	416.5511552635991	39.048	1.0924	36.121	35.948	37.04	-2.9264	0.013301	2.633E-05	NaN	28.577	45	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250100	+		42459	28600	35068	35091							0.021170860517941037
PGLPIVKK	8	Unmodified	_PGLPIVKK_					0	0	0			REV__tr|A0A553SQU4|A0A553SQU4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07290PE=4SV=1	REV__tr|A0A553SQU4|A0A553SQU4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07290PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	425.92169189453125	2	426.289288	850.564024	-1.1863	-0.00050569	1.5411	0.00065694	0.35481	0.00015125	426.28974559655666	55.05	1.195	52.236	51.872	53.067	-2.8139					43	23	3	0	0	0	0.028476	1	3798	3798		8.2313	4.2461	1	63661	+		42460	30663	35069	35092	45926	45926					0.13276457524796115
PGLPIVKK	8	Unmodified	_PGLPIVKK_					0	0	0			REV__tr|A0A553SQU4|A0A553SQU4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07290PE=4SV=1	REV__tr|A0A553SQU4|A0A553SQU4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07290PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	426.289288	850.564024	-0.60341	-0.00025723	0.46036	0.00019625	-0.14305	-6.098E-05	426.2894117196422	55.514	1.0134	52.22	51.957	52.97	-3.2944	-0.0079093	-0.00027852	NaN	8.2313	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172480	+		42461	30663	35069	35092							0.13276457524796115
PGLPQLSL	8	Unmodified	_PGLPQLSL_					0	0	0			REV__ENST00000564907.5_1_16:57697518-57697860:+|nuORF	REV__ENST00000564907.5_1_16:57697518-57697860:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	412.7460632324219	2	412.747453	823.480354	0.89602	0.00036983	-3.8761	-0.0015999	-2.9801	-0.00123	412.745727074971	134.3	1.3763	134.07	133.07	134.44	-0.22697					63	27	4	0	0	0	0.73626	1	13294	13294		33.516	0	1	259910	+		42462	27671	35070	35093	45927	45927					0.06155301357091503
PGLRLPGSL	9	Unmodified	_PGLRLPGSL_					0	0	0		ENST00000478465.5_1_9:94122687-94124159:-|nuORF;AUH|p.E132Rfs*11|1|0.06|ENSG00000148090|chr9:91355907-91355908|-/T|frameshift_variant;nc|ENSG00000148090|Q13825-2|AUH;ENSG00000148090|ENST00000375731|AUH	ENST00000478465.5_1_9:94122687-94124159:-|nuORF	ENST00000478465.5_1_9:94122687-94124159:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	455.28009033203125	2	455.279452	908.544351	1.0159	0.00046253	-1.266	-0.00057637	-0.25004	-0.00011384	455.27875654755223	89.632	1.4568	87.057	86.704	88.161	-2.575					63	28	4	0	0	0	0.35444	1	7700	7700		56.721	3.7844	1	367150			42463	136	35071	35094	45928	45928					0.08642081514040001
PGLRPRSA	8	Unmodified	_PGLRPRSA_					0	0	0			REV__ENST00000314349.8_1_19:39980463-39980541:+|nuORF	REV__ENST00000314349.8_1_19:39980463-39980541:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	427.2537841796875	2	427.253769	852.492984	-1.369	-0.00058491	1.6643	0.00071106	0.29526	0.00012615	427.254318949799	38.75	1.1373	36.041	35.816	36.953	-2.7097					54	22	3	0	0	0	0.73938	1	1860	1860		31.955	0	1	356560	+		42464	24380	35072	35095	45929	45929					0.0608375753998871
PGLRTAVPPH	10	Unmodified	_PGLRTAVPPH_					0	0	0		nc|ENSG00000139625|Q12852|MAP3K12;ENSG00000139625|ENST00000547488|MAP3K12;ENST00000547020.1_1_12:53876285-53877059:-|nuORF;ENST00000552365.1_1_12:53874968-53878035:-|nuORF	nc|ENSG00000139625|Q12852|MAP3K12	nc|ENSG00000139625|Q12852|MAP3K12	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.8013305664062	2	522.801083	1043.58761	-0.5616	-0.00029361	0.20012	0.00010462	-0.36148	-0.00018898	522.8011306629728	21.387	1.7669	20.049	19.77	21.537	-1.3386					100	36	4	0	0	0	0.65434	1	210	210		35.618	1.4457	1	978010			42465	4790	35073	35096	45930	45930					0.06756271291305893
PGLTQHNI	8	Unmodified	_PGLTQHNI_					0	0	0		nc|ENSG00000168122|Q9NSJ1|ZNF355P	nc|ENSG00000168122|Q9NSJ1|ZNF355P	nc|ENSG00000168122|Q9NSJ1|ZNF355P	MULTI-MSMS	OvCa99_classI_Rep5	1	440.2391052246094	2	440.237784	878.461016	0.59936	0.00026386	-0.9315	-0.00041008	-0.33214	-0.00014622	440.237198915838	49.362	0.78174	49.362	48.986	49.768	0					36	17	3	0	0	0	0.68714	1	3680	3680		45.952	7.1458	1	413240			42466	15165	35074	35097	45931	45931					0.016923450661806783
PGNHVQRAHR	10	Unmodified	_PGNHVQRAHR_					0	0	0			REV__nc|ENSG00000084093|Q13127-4|REST	REV__nc|ENSG00000084093|Q13127-4|REST	MULTI-MSMS	OvCa9_classI_Rep2	2	586.3124389648438	2	586.313212	1170.61187	2.8796	0.0016884	-4.0226	-0.0023585	-1.143	-0.00067013	586.3107516361531	26.153	0.76175	23.443	23.311	24.073	-2.7097					35	18	3	0	0	0	0.7759	1	356	356		21.96	1.013	1	95087	+		42467	17119	35075	35098	45932	45932					0.03338924497552398
PGNLFRLIK	9	Unmodified	_PGNLFRLIK_					0	0	0		AMIGO2|p.N439Kfs*24|1|0.45|ENSG00000139211|chr12:47077686-47077687|-/AAGTCTATTTTTAAAGGACACTAATACATAAAGT|frameshift_variant;ENSG00000139211|ENST00000550413|AMIGO2	AMIGO2|p.N439Kfs*24|1|0.45|ENSG00000139211|chr12:47077686-47077687|-/AAGTCTATTTTTAAAGGACACTAATACATAAAGT|frameshift_variant	AMIGO2|p.N439Kfs*24|1|0.45|ENSG00000139211|chr12:47077686-47077687|-/AAGTCTATTTTTAAAGGACACTAATACATAAAGT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	529.3292236328125	2	529.329476	1056.6444	-1.2839	-0.00067959	-0.45447	-0.00024057	-1.7383	-0.00092016	529.3289487726382	57.146	1.093	54.354	54.08	55.173	-2.792					49	21	4	0	0	0	0.56889	1	4073	4073		35.618	7.736	1	235690			42468	87	35076	35099	45933	45933					0.11834318847832037
PGNPTVMTLIV	11	Oxidation (M)	_PGNPTVM(Oxidation (M))TLIV_		PGNPTVM(1)TLIV		PGNPTVM(46)TLIV	0	0	1		ENST00000489643.6_1_9:34649384-34650059:+|nuORF	ENST00000489643.6_1_9:34649384-34650059:+|nuORF	ENST00000489643.6_1_9:34649384-34650059:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.318603515625	2	579.315374	1156.6162	-0.41226	-0.00023883	3.1655	0.0018338	2.7532	0.001595	579.3171446209145	38.652	1.8901	35.725	35.453	37.343	-2.9264					115	37	4	0	0	0	0.58572	1	1564	1564		45.972	6.7194	1	1278600			42469	12679	35077	35100	45934	45934		340			0.044152080855837994
PGNWHSPQGLI	11	Unmodified	_PGNWHSPQGLI_					0	0	0			REV__nc|ENSG00000100095|Q9BYH1-3|SEZ6L	REV__nc|ENSG00000100095|Q9BYH1-3|SEZ6L	MULTI-MSMS	OvCa99_classI_Rep5	1	603.3037109375	2	603.306729	1204.59891	2.0595	0.0012425	0.13179	7.9509E-05	2.1913	0.001322	603.3066978884705	134.5	0.56451	134.5	134.29	134.86	0					20	12	2	0	0	0	0.68757	1	15660	15660		33.922	0	1	216080	+		42470	17364	35078	35101	45935	45935					0.004790485948205969
PGPAGPRR	8	Unmodified	_PGPAGPRR_					0	0	0		ENST00000400274.5_1_21:47976946-47980690:+|nuORF;ENST00000472364.1_1_21:47976931-47978452:+|nuORF;ENST00000481883.1_1_21:47977314-47978452:+|nuORF	ENST00000400274.5_1_21:47976946-47980690:+|nuORF	ENST00000400274.5_1_21:47976946-47980690:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	404.2322998046875	2	404.232836	806.45112	1.4985	0.00060574	-1.2529	-0.00050645	0.24562	9.9287E-05	404.2322157005619	134.25	0.93222	134.02	133.46	134.39	-0.22697					47	18	3	0	0	0	0.75915	1	13302	13302		20.482	0	1	139150			42471	11405	35079	35102	45936	45936					0.04015201851461825
PGPFLVMVLI	10	Unmodified	_PGPFLVMVLI_					0	0	0		nc|ENSG00000154864|Q9H5I5-3|PIEZO2;nc|ENSG00000154864|Q9H5I5-2|PIEZO2;nc|ENSG00000154864|Q9H5I5|PIEZO2;nc|ENSG00000154864|Q9H5I5-4|PIEZO2;ENSG00000154864|ENST00000674853|PIEZO2	nc|ENSG00000154864|Q9H5I5-3|PIEZO2	nc|ENSG00000154864|Q9H5I5-3|PIEZO2	MULTI-MSMS	OvCa9_classI_Rep2	2	543.3226928710938	2	543.325014	1084.63547	-2.0755	-0.0011277	-1.514	-0.00082258	-3.5894	-0.0019502	543.3239929564256	119.25	1.2315	119.08	118.81	120.04	-0.17138					52	24	3	0	0	0	0.5794	1	11484	11484		44.531	7.372	1	160450			42472	5758	35080	35103	45937	45937					0.09654209167160843
PGPGRLIPPP	10	Unmodified	_PGPGRLIPPP_					0	0	0			REV__ENST00000394275.6_1_15:91477270-91478348:+|nuORF	REV__ENST00000394275.6_1_15:91477270-91478348:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	500.7982177734375	2	500.800552	999.58655	-3.3891	-0.0016973	-0.88633	-0.00044387	-4.2754	-0.0021411	500.79997207948645	149.12	1.1552	148.89	148.52	149.67	-0.22696					61	22	4	0	0	0	0.68695	1	15098	15098		31.955	2.8053	1	177980	+		42473	25295	35081	35104	45938	45938					0.08674056922416185
PGPNKTLL	8	Unmodified	_PGPNKTLL_					0	0	0		nc|ENSG00000112659|Q8IWT3-3|CUL9;ENSG00000112659|ENST00000252050|CUL9;ENST00000515773.5_1_6:43164260-43192180:+|nuORF	nc|ENSG00000112659|Q8IWT3-3|CUL9	nc|ENSG00000112659|Q8IWT3-3|CUL9	MULTI-MSMS	OvCa9_classI_Rep4_	4	420.2527770996094	2	420.252903	838.491253	0.28048	0.00011787	0.0022746	9.559E-07	0.28276	0.00011883	420.25282934845166	110.01	2.9881	108.41	108.07	111.06	-1.6011					122	56	5	0	0	0	0.67745	1	10133	10133		47.916	1.1492	1	621620			42474	2917	35082	35105	45939	45939					0.06554703731376321
PGPPAGRR	8	Unmodified	_PGPPAGRR_					0	0	0		ENSG00000160408|ENST00000373146|ST6GALNAC6;nc|ENSG00000257524|Q969X2-3|ST6GALNAC6	ENSG00000160408|ENST00000373146|ST6GALNAC6	ENSG00000160408|ENST00000373146|ST6GALNAC6	MULTI-MSMS	OvCa9_classI_Rep2	2	404.2326354980469	2	404.232836	806.45112	1.3505	0.00054594	-1.1916	-0.00048169	0.15893	6.4246E-05	404.23224424215823	134.98	1.1763	134.75	134.34	135.52	-0.22696					59	23	3	0	0	0	0.74394	1	13368	13368		13.775	0	1	117390			42475	6064	35083	35106	45940	45940					0.04015201851461825
PGQHLQLLL	9	Unmodified	_PGQHLQLLL_					0	0	0		nc|ENSG00000211782|A0A0A6YYK1|TRAV8-1	nc|ENSG00000211782|A0A0A6YYK1|TRAV8-1	nc|ENSG00000211782|A0A0A6YYK1|TRAV8-1	MULTI-MSMS	OvCa9_classI_Rep3	3	509.80401611328125	2	509.805834	1017.59712	-1.3099	-0.00066782	-2.9211	-0.0014892	-4.231	-0.002157	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.69895	1	11067	11067		18.324	1.8513	1	99460			42476	15294	35084	35107	45941	45941					0.08902039576844345
PGQPVPKNIL	10	Unmodified	_PGQPVPKNIL_					0	0	0		EIF4ENIF1|p.G890Efs*89|1|0.51|ENSG00000184708|chr22:31440751-31440751|C/-|frameshift_variant;ENSG00000184708|ENST00000330125|EIF4ENIF1;nc|ENSG00000184708|Q9NRA8-2|EIF4ENIF1;nc|ENSG00000184708|Q9NRA8-3|EIF4ENIF1	EIF4ENIF1|p.G890Efs*89|1|0.51|ENSG00000184708|chr22:31440751-31440751|C/-|frameshift_variant	EIF4ENIF1|p.G890Efs*89|1|0.51|ENSG00000184708|chr22:31440751-31440751|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	531.81689453125	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.65434	1	11489	11489		35.618	1.4457	1	178650			42477	792	35085	35108	45942	45942					0.09498308748334239
PGQVDFYAR	9	Unmodified	_PGQVDFYAR_					0	0	0		PDK1-RBMS1|1|fusion;PDK1-RBMS1|2|fusion;ENSG00000152256|ENST00000282077|PDK1;nc|ENSG00000152256|Q15118-2|PDK1	PDK1-RBMS1|1|fusion	PDK1-RBMS1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	526.7625732421875	2	526.761623	1051.50869	0.69507	0.00036614	2.0482	0.0010789	2.7433	0.001445	526.7626305368649	121.64	1.7818	120.61	120.22	122	-1.0286					87	33	4	0	0	0	0.5811	1	9334	9334		34.173	2.2177	1	598650			42478	15487	35086	35109	45943	45943					-0.015000007336311683
PGRLGGLRS	9	Unmodified	_PGRLGGLRS_					0	0	0			REV__ENST00000526355.6_1_11:106888875-106888962:-|nuORF	REV__ENST00000526355.6_1_11:106888875-106888962:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	456.7723693847656	2	456.772326	911.530098	1.8805	0.00085895	-0.14959	-6.8328E-05	1.7309	0.00079063	456.7712837632454	41.607	1.2326	38.897	38.586	39.818	-2.7097					57	24	4	0	0	0	0.53483	1	2189	2189		39.253	2.0937	1	143280	+		42479	27137	35087	35110	45944	45944					0.07079429085740685
PGRLSLDGR	9	Unmodified	_PGRLSLDGR_					0	0	0		ENST00000250124.10_1_17:7491195-7491456:+|nuORF	ENST00000250124.10_1_17:7491195-7491456:+|nuORF	ENST00000250124.10_1_17:7491195-7491456:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	485.7748718261719	2	485.775065	969.535577	0.72839	0.00035383	-1.0292	-0.00049997	-0.30084	-0.00014614	485.7744551887758	43.049	1.3356	40.339	39.868	41.203	-2.7097					59	26	3	0	0	0	0.38969	1	2371	2371		52.937	6.9847	1	230050			42480	9793	35088	35111	45945	45945					0.04959107877573388
PGRPGLTL	8	Unmodified	_PGRPGLTL_					0	0	0		nc|ENSG00000112425|B3EWF7|EPM2A	nc|ENSG00000112425|B3EWF7|EPM2A	nc|ENSG00000112425|B3EWF7|EPM2A	MULTI-MSMS	OvCa9_classI_Rep2	2	405.7444152832031	2	405.745245	809.475937	1.1554	0.00046878	-0.86817	-0.00035225	0.2872	0.00011653	405.74475762963664	73.362	1.8327	70.962	70.22	72.052	-2.3999					79	34	4	0	0	0	0.42208	4	5987	5958;5969;5981;5987		85.359	8.5613	1	506230			42481	14962	35089	35112	45946;45947;45948;45949	45949					0.06357836934171246
PGRPGLTL	8	Unmodified	_PGRPGLTL_					0	0	0		nc|ENSG00000112425|B3EWF7|EPM2A	nc|ENSG00000112425|B3EWF7|EPM2A	nc|ENSG00000112425|B3EWF7|EPM2A	MULTI-MSMS	OvCa9_classI_Rep4_	4	405.7465515136719	2	405.745245	809.475937	1.137	0.00046132	-1.1048	-0.00044825	0.032213	1.307E-05	405.74469625687584	74.399	1.7805	71.168	70.816	72.596	-3.2308					87	36	4	0	0	0	0.47599	2	5806	5806;5828		79.939	0	1	1442300			42482	14962	35089	35112	45950;45951	45950					0.06357836934171246
PGRRLGDSR	9	Unmodified	_PGRRLGDSR_					0	0	0		nc|ENSG00000105732|Q6ZN55-2|ZNF574	nc|ENSG00000105732|Q6ZN55-2|ZNF574	nc|ENSG00000105732|Q6ZN55-2|ZNF574	MULTI-MSMS	OvCa9_classI_Rep2	2	507.2828063964844	2	507.283589	1012.55262	0.0066851	3.3913E-06	-0.10662	-5.4086E-05	-0.099933	-5.0694E-05	507.283412188162	31.081	1.5294	28.371	28.15	29.679	-2.7097					66	30	3	0	0	0	0.50149	1	927	927		42.396	6.7778	1	500220			42483	14941	35090	35113	45952	45952					0.046850284833681144
PGRRVLGG	8	Unmodified	_PGRRVLGG_					0	0	0			REV__ENST00000449660.5_1_1:2482824-2482977:-|nuORF	REV__ENST00000449660.5_1_1:2482824-2482977:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	406.2486267089844	2	406.248486	810.48242	1.9995	0.00081228	-1.9505	-0.00079239	0.048949	1.9885E-05	406.2475600842221	141.22	1.3094	139.76	139.45	140.76	-1.4627					69	24	4	0	0	0	0.73417	1	13823	13823		9.4706	0.64823	1	437180	+		42484	25950	35091	35114	45953	45953					0.06959774885569914
PGRWIPKKN	9	Unmodified	_PGRWIPKKN_					0	0	0		nc|ENSG00000096060|Q13451-2|FKBP5	nc|ENSG00000096060|Q13451-2|FKBP5	nc|ENSG00000096060|Q13451-2|FKBP5	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.325439453125	2	548.324725	1094.6349	-1.0223	-0.00056053	0.46606	0.00025555	-0.5562	-0.00030498	548.324810250608	92.261	0.96341	89.719	89.364	90.327	-2.5425					46	18	3	0	0	0	0.53957	1	8008	8008		38.806	12.113	1	186950			42485	14921	35092	35115	45954	45954					0.09136550562334378
PGRWIPKKN	9	Unmodified	_PGRWIPKKN_					0	0	0		nc|ENSG00000096060|Q13451-2|FKBP5	nc|ENSG00000096060|Q13451-2|FKBP5	nc|ENSG00000096060|Q13451-2|FKBP5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	548.324725	1094.6349	-1.5449	-0.0008471	-1.2582	-0.00068992	-2.8031	-0.001537	548.322956437302	91.785	1.0743	89.761	89.332	90.406	-2.0241	0.021248	-0.0017619	NaN	38.806	51	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211540			42486	14921	35092	35115							0.09136550562334378
PGSGERDLPQ	10	Unmodified	_PGSGERDLPQ_					0	0	0		ENST00000564138.5_1_16:81942112-81942175:+|nuORF	ENST00000564138.5_1_16:81942112-81942175:+|nuORF	ENST00000564138.5_1_16:81942112-81942175:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.2775268554688	2	528.259445	1054.50434	-0.67064	-0.00035427	-3.2182	-0.0017001	-3.8889	-0.0020543	528.2582307091029	41.572	0.13105	41.572	41.462	41.594	0					4	2	2	0	0	0	0.026994	1	2596	2596		25.574	10.709	1	36474			42487	13799	35093	35116	45955	45955					-0.02073509947194907
PGSKKVIL	8	Unmodified	_PGSKKVIL_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-SECPEP	OvCa9_classI_Rep2	2	422.222412109375	2	421.278921	840.543289	-1.099	-0.00046299	2.5632	0.0010798	1.4642	0.00061683	421.27987340469724	61.327	1.3813	58.568	58.201	59.582	-2.7593					47	26	2	0	0	0	0.028476	1	4512	4512		12.959	0	1	39001			42488	9525	35094	35117	45956	45956					0.11663867145136919
PGSLDIVWP	9	Unmodified	_PGSLDIVWP_					0	0	0			REV__ENST00000245414.8_1_5:131819304-131819655:-|nuORF	REV__ENST00000245414.8_1_5:131819304-131819655:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.3100280761719	2	492.263468	982.512382	-0.19534	-9.6159E-05	3.318	0.0016333	3.1227	0.0015372	492.2652056993546	103.84	0.94117	101.72	101.22	102.17	-2.1192					28	17	2	0	0	0	0.027462	1	9388	9388		31.955	1.4512	1	46661	+		42489	23835	35095	35118	45957	45957					0.020426690402246095
PGSLGVTIDNI	11	Unmodified	_PGSLGVTIDNI_					0	0	0		ENSG00000171587|ENST00000400454|DSCAM;nc|ENSG00000171587|O60469-2|DSCAM	ENSG00000171587|ENST00000400454|DSCAM	ENSG00000171587|ENST00000400454|DSCAM	MULTI-MSMS	OvCa99_classI_Rep5	1	543.7980346679688	2	543.295496	1084.57644	1.5866	0.00086199	-1.0752	-0.00058413	0.51143	0.00027786	543.2948539602045	118.74	0.98846	118.74	118.39	119.38	0					48	20	3	0	0	0	0.68399	1	13653	13653		35.152	3.1972	1	438030			42490	7215	35096	35119	45958	45958					0.03753404406506888
PGSLKIRG	8	Unmodified	_PGSLKIRG_					0	0	0		TIAM2|p.C28G|1|0.17|ENSG00000146426|chr6:155129305-155129305|T/G|missense_variant	TIAM2|p.C28G|1|0.17|ENSG00000146426|chr6:155129305-155129305|T/G|missense_variant	TIAM2|p.C28G|1|0.17|ENSG00000146426|chr6:155129305-155129305|T/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.2110595703125	2	414.25852	826.502486	-0.062548	-2.5911E-05	0.2665	0.0001104	0.20395	8.4489E-05	414.258552672871	49.959	0.39008	49.959	49.723	50.114	0					12	8	2	0	0	0	0.028476	1	3758	3758		12.207	0	1	146100			42491	32952	35097	35120	45959	45959					0.08229525825527162
PGSLVLLWL	9	Unmodified	_PGSLVLLWL_					0	0	0			REV__nc|ENSG00000163297|P58335-2|ANTXR2	REV__nc|ENSG00000163297|P58335-2|ANTXR2	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.7717590332031	2	499.307678	996.600803	-1.2379	-0.00061809	-3.2487	-0.0016221	-4.4866	-0.0022402	499.3059768729497	101.52	0.57924	99.916	99.761	100.34	-1.6053					17	10	3	0	0	0	0.027462	1	6978	6978		18.324	0	1	17556	+		42492	20824	35098	35121	45960	45960					0.102367093507155
PGSPFKPL	8	Unmodified	_PGSPFKPL_					0	0	0		nc|ENSG00000068912|Q96DZ1-2|ERLEC1;ENSG00000068912|ENST00000185150|ERLEC1;nc|ENSG00000068912|Q96DZ1-3|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	nc|ENSG00000068912|Q96DZ1-2|ERLEC1	MULTI-MSMS	OvCa99_classI_Rep5	1	421.7436218261719	2	421.742171	841.469789	2.1061	0.00088825	0.56412	0.00023791	2.6703	0.0011262	421.74228463682323	98.096	0.72878	98.096	97.823	98.552	0					44	16	4	0	0	0	0.65582	1	10782	10782		52.299	0	1	4898000			42493	1401	35099	35122	45961	45961					0.04271318702649296
PGSSEPITVK	10	Unmodified	_PGSSEPITVK_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.79541015625	2	507.776939	1013.53933	0.41731	0.0002119	0.19753	0.0001003	0.61484	0.0003122	507.77660152597787	128.78	1.1367	127.33	127.05	128.19	-1.4565					39	22	4	0	0	0	0.026551	1	12329	12329		42.864	0	1	47055			42494	1341	35100	35123	45962	45962					0.033097328607595955
PGSWVSCEQVL	11	Unmodified	_PGSWVSCEQVL_					0	0	0		ENSG00000100290|ENST00000216115|BIK	ENSG00000100290|ENST00000216115|BIK	ENSG00000100290|ENST00000216115|BIK	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.1955261230469	3	402.193746	1203.55941	0.42041	0.00016909	-2.0502	-0.0008246	-1.6298	-0.00065551	402.19297078483453	34.858	0.41863	34.858	34.539	34.957	0					11	8	2	0	0	0	0.025746	1	1697	1697		17.167	0	1	45282			42495	2040	35101	35124	45963	45963					-0.03422839470931649
PGTREVEELN	10	Unmodified	_PGTREVEELN_					0	0	0		ENST00000517973.1_1_5:150400193-150407688:+|nuORF	ENST00000517973.1_1_5:150400193-150407688:+|nuORF	ENST00000517973.1_1_5:150400193-150407688:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	572.2858276367188	2	572.28566	1142.55677	-1.4852	-0.00084994	2.0625	0.0011804	0.57737	0.00033042	572.2866735153697	32.713	1.6873	30.003	29.53	31.218	-2.7097					70	33	3	0	0	0	0.60504	1	1140	1140		41.427	4.9799	1	392360			42496	13066	35102	35125	45964	45964					-0.008809716042378568
PGVALHSRAE	10	Unmodified	_PGVALHSRAE_					0	0	0			REV__ENST00000575034.5_1_17:78328973-78388844:-|nuORF	REV__ENST00000575034.5_1_17:78328973-78388844:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.7797241210938	2	518.780348	1035.54614	-1.2287	-0.00063741	0.18854	9.781E-05	-1.0401	-0.0005396	518.7804455688876	41.702	1.5448	38.722	38.388	39.933	-2.9804					74	29	3	0	0	0	0.47142	2	1897	1885;1897		58.23	14.113	1	1689300	+		42497	27769	35103	35126	45965;45966	45966					0.029790905319941885
PGVARLPLL	9	Unmodified	_PGVARLPLL_					0	0	0		nc|ENSG00000168487|P13497-3|BMP1;nc|ENSG00000168487|P13497-4|BMP1;nc|ENSG00000168487|P13497-5|BMP1;nc|ENSG00000168487|P13497-2|BMP1;BMP1|p.H749Qfs*3|1|0.09|ENSG00000168487|chr8:22206867-22206867|C/-|frameshift_variant;BMP1|p.H740Qfs*12|1|0.11|ENSG00000168487|chr8:22201915-22201915|C/-|frameshift_variant;nc|ENSG00000168487|P13497-6|BMP1;ENSG00000168487|ENST00000306385|BMP1	nc|ENSG00000168487|P13497-3|BMP1	nc|ENSG00000168487|P13497-3|BMP1	MULTI-MSMS	OvCa9_classI_Rep2	2	468.3055114746094	2	468.30547	934.596387	-1.2276	-0.00057488	0.869	0.00040696	-0.35858	-0.00016792	468.30580149557557	101.8	2.1744	101.04	100.67	102.84	-0.76401					107	43	5	0	0	0	0.42057	1	9366	9366		50.025	0	1	1285400			42498	152	35104	35127	45967	45967					0.12647244927802603
PGVARLPLL	9	Unmodified	_PGVARLPLL_					0	0	0		nc|ENSG00000168487|P13497-3|BMP1;nc|ENSG00000168487|P13497-4|BMP1;nc|ENSG00000168487|P13497-5|BMP1;nc|ENSG00000168487|P13497-2|BMP1;BMP1|p.H749Qfs*3|1|0.09|ENSG00000168487|chr8:22206867-22206867|C/-|frameshift_variant;BMP1|p.H740Qfs*12|1|0.11|ENSG00000168487|chr8:22201915-22201915|C/-|frameshift_variant;nc|ENSG00000168487|P13497-6|BMP1;ENSG00000168487|ENST00000306385|BMP1	nc|ENSG00000168487|P13497-3|BMP1	nc|ENSG00000168487|P13497-3|BMP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	468.3067932128906	2	468.30547	934.596387	-0.10884	-5.097E-05	-0.26151	-0.00012247	-0.37035	-0.00017344	468.3052924042457	103.42	2.4994	101.22	100.52	103.02	-2.1981					124	47	5	0	0	0	0.32337	1	9324	9324		60.294	4.7898	1	1560600			42499	152	35104	35127	45968	45968					0.12647244927802603
PGVPGSPEPHG	11	Unmodified	_PGVPGSPEPHG_					0	0	0			REV__COL15A1|p.P577H|1|0.04|ENSG00000204291|chr9:99022119-99022119|C/A|missense_variant	REV__COL15A1|p.P577H|1|0.04|ENSG00000204291|chr9:99022119-99022119|C/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	515.75048828125	2	515.751256	1029.48796	0.44781	0.00023096	0.40924	0.00021107	0.85705	0.00044203	515.7513503783326	132.24	1.5304	131.12	130.79	132.32	-1.1249					72	30	3	0	0	0	0.68684	1	10593	10593		34.173	1.3601	1	308860	+		42500	16160	35105	35128	45969	45969					-0.025605911132970505
PGVRYDFR	8	Unmodified	_PGVRYDFR_					0	0	0		ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	ENSG00000145623|ENST00000274276|OSMR	MULTI-MSMS	OvCa9_classI_Rep2	2	505.264892578125	2	505.264333	1008.51411	0.8595	0.00043427	-0.94134	-0.00047563	-0.081844	-4.1353E-05	505.26375901484937	29.367	1.0512	26.658	26.456	27.508	-2.7097					36	21	2	0	0	0	0.72896	1	728	728		37.159	10.363	1	167190			42501	5232	35106	35129	45970	45970					0.01019722848843685
PGVVGFPGQT	10	Unmodified	_PGVVGFPGQT_					0	0	0		ENSG00000114270|ENST00000681320|COL7A1;nc|ENSG00000114270|Q02388-2|COL7A1	ENSG00000114270|ENST00000681320|COL7A1	ENSG00000114270|ENST00000681320|COL7A1	MULTI-MSMS	OvCa99_classI_Rep5	1	479.7518005371094	2	479.753267	957.491981	-0.4696	-0.00022529	-2.3594	-0.0011319	-2.829	-0.0013572	479.75196425492345	25.117	0.85551	25.117	24.888	25.743	0					35	16	4	0	0	0	0.62299	1	520	520		39.253	3.6345	1	672340			42502	3016	35107	35130	45971	45971					0.01153498380426754
PGWRRRRRRRR	11	Unmodified	_PGWRRRRRRRR_					0	0	0		ENST00000288502.8_2_9:117373626-117379440:+|nuORF	ENST00000288502.8_2_9:117373626-117379440:+|nuORF	ENST00000288502.8_2_9:117373626-117379440:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.1648559570312	3	536.664941	1606.97299	-5.6849	-0.0030509	-0.87757	-0.00047096	-6.5625	-0.0035219	536.6643231402943	163.97	0.59265	162.58	162.1	162.69	-1.3925					35	13	4	0	0	0	0.026448	1	14275	14275		13.508	4.2961	1	443090			42503	10082	35108	35131	45972	45972					0.19378586321727198
PGWRRRRRRRR	11	Unmodified	_PGWRRRRRRRR_					0	0	0		ENST00000288502.8_2_9:117373626-117379440:+|nuORF	ENST00000288502.8_2_9:117373626-117379440:+|nuORF	ENST00000288502.8_2_9:117373626-117379440:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	536.664941	1606.97299	-5.7914	-0.003108	0.88654	0.00047577	-4.9048	-0.0026323	536.665295873514	162.77	1.0196	162.54	161.62	162.64	-0.22696	-0.019899	0.001783	NaN	13.508	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247600			42504	10082	35108	35131							0.19378586321727198
PGYLEISSM	9	Unmodified	_PGYLEISSM_					0	0	0		ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-3|GTF2IRD2	ENSG00000196275|ENST00000451013|GTF2IRD2	ENSG00000196275|ENST00000451013|GTF2IRD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.7927551269531	2	498.738968	995.463383	-0.29837	-0.00014881	-4.0176	-0.0020037	-4.316	-0.0021525	498.73689944861445	32.805	2.1829	32.805	32.403	34.586	0					67	44	2	0	0	0	0.027462	1	1435	1435		24.203	0	1	41410			42505	7462	35109	35132	45973	45973					-0.03452987311004563
PGYLFSPPW	9	Unmodified	_PGYLFSPPW_					0	0	0			REV__ENST00000320431.7_1_3:49755223-49755382:-|nuORF	REV__ENST00000320431.7_1_3:49755223-49755382:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.3175048828125	2	532.26601	1062.51747	-2.0664	-0.0010999	-2.0293	-0.0010801	-4.0957	-0.00218	532.2644773329658	43.552	0.56223	40.545	40.378	40.94	-3.0074					16	10	3	0	0	0	0.027462	1	2105	2105		25.45	0	1	12793	+		42506	24441	35110	35133	45974	45974					-0.011290270971585414
PHAISRNRL	9	Unmodified	_PHAISRNRL_					0	0	0			REV__ZZZ3|p.N293Sfs*4|1|0.06|ENSG00000036549|chr1:77632478-77632479|-/GA|frameshift_variant	REV__ZZZ3|p.N293Sfs*4|1|0.06|ENSG00000036549|chr1:77632478-77632479|-/GA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	532.314453125	2	532.309606	1062.60466	1.8817	0.0010017	3.2467	0.0017283	5.1284	0.0027299	532.3128712590462	117.35	1.4402	117.35	116.95	118.39	0					82	30	5	0	0	0	0.42676	1	13442	13442		49.442	5.3247	1	1350500	+		42507	16608	35111	35134	45975	45975					0.07586191897121353
PHAKEMRHFH	10	Unmodified	_PHAKEMRHFH_					0	0	0			REV__ENST00000562941.1_1_16:29473130-29474884:+|nuORF	REV__ENST00000562941.1_1_16:29473130-29474884:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	645.3192138671875	2	645.319648	1288.62474	0.33395	0.0002155	-3.4595	-0.0022325	-3.1255	-0.002017	645.3172569118698	62.297	0.66018	62.297	62.081	62.741	0					31	15	3	0	0	0	0.45822	1	5532	5532		60.118	10.582	1	1991900	+		42508	23264	35112	35135	45976	45976					-0.00802380434583938
PHALHGLSPG	10	Unmodified	_PHALHGLSPG_					0	0	0		ENSG00000169840|ENST00000302945|GSX1	ENSG00000169840|ENST00000302945|GSX1	ENSG00000169840|ENST00000302945|GSX1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.78656005859375	2	493.264333	984.514114	-0.81714	-0.00040306	1.3542	0.00066797	0.53704	0.0002649	493.26646900834595	43.006	0.20957	39.999	39.853	40.063	-3.0074					5	3	2	0	0	0	0.026871	1	2020	2020		29.15	15.374	1	8419.9			42509	7042	35113	35136	45977	45977					0.02123722848853049
PHALIDRL	8	Unmodified	_PHALIDRL_					0	0	0			REV__ENST00000439120.1_1_7:26438602-26533534:+|nuORF	REV__ENST00000439120.1_1_7:26438602-26533534:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.7530822753906	2	467.777077	933.5396	-0.52355	-0.00024491	0.51473	0.00024078	-0.0088251	-4.1282E-06	467.7770841520459	39.568	0.63897	39.568	39.332	39.971	0					24	14	2	0	0	0	0.028476	1	2387	2387		37.028	18.704	1	912480	+		42510	25815	35114	35137	45978	45978					0.07017197371271777
PHAQALRL	8	Unmodified	_PHAQALRL_					0	0	0			REV__ENST00000471818.1_1_6:31936126-31936727:+|nuORF	REV__ENST00000471818.1_1_6:31936126-31936727:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	453.25592041015625	2	453.269419	904.524284	0.9113	0.00041306	1.7567	0.00079626	2.668	0.0012093	453.27017717605474	49.224	0.24666	46.463	46.375	46.621	-2.7603					6	4	2	0	0	0	0.028476	1	3123	3123		37.028	6.5248	1	7152.8	+		42511	23148	35115	35138	45979	45979					0.06820330574066702
PHCCPLFPL	9	Unmodified	_PHCCPLFPL_					0	0	0			REV__ENST00000484432.1_1_7:129683626-129691088:-|nuORF	REV__ENST00000484432.1_1_7:129683626-129691088:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.8080444335938	2	513.748616	1025.48268	0.24905	0.00012795	1.873	0.00096223	2.122	0.0010902	513.749505399508	111.62	0.94807	110.11	109.89	110.84	-1.5111					29	17	3	0	0	0	0.02744	1	10362	10362		60.404	23.375	1	40387	+		42512	26548	35116	35139	45980	45980					-0.029043095011047626
PHCCPLFPL	9	Unmodified	_PHCCPLFPL_					0	0	0			REV__ENST00000484432.1_1_7:129683626-129691088:-|nuORF	REV__ENST00000484432.1_1_7:129683626-129691088:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	513.748616	1025.48268	1.4036	0.00072111	0.069038	3.5468E-05	1.4727	0.00075657	513.7487402655241	111.19	1.0396	110.08	109.8	110.84	-1.1038	-0.058503	-0.0012654	NaN	60.404	33	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38256	+		42513	26548	35116	35139							-0.029043095011047626
PHCLWVVI	8	Unmodified	_PHCLWVVI_					0	0	0			REV__ENST00000489323.5_1_14:74495895-74513566:+|nuORF	REV__ENST00000489323.5_1_14:74495895-74513566:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	482.7840576171875	2	483.765123	965.515694	-0.65067	-0.00031477	-2.8322	-0.0013701	-3.4829	-0.0016849	483.7637286147612	121.04	0.80745	119.7	119.44	120.25	-1.3479					24	15	2	0	0	0	0.028476	1	11432	11432		24.504	0	1	28480	+		42514	26637	35117	35140	45981	45981					0.03155640613260857
PHELRRKR	8	Unmodified	_PHELRRKR_					0	0	0		ENST00000513638.5_1_1:89873259-89875899:+|nuORF	ENST00000513638.5_1_1:89873259-89875899:+|nuORF	ENST00000513638.5_1_1:89873259-89875899:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	546.33154296875	2	546.330873	1090.64719	-2.6411	-0.0014429	2.3987	0.0013105	-0.24246	-0.00013246	546.3320576477423	36.639	1.8723	33.93	33.647	35.519	-2.7097					83	37	3	0	0	0	0.72896	1	1638	1638		37.159	3.2375	1	180730			42515	13019	35118	35141	45982	45982					0.10549587025343499
PHETAAPKRTY	11	Unmodified	_PHETAAPKRTY_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;ENST00000473999.2_1_12:124832131-124832948:-|nuORF	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	635.386474609375	2	635.830569	1269.64658	1.0952	0.00069637	-2.247	-0.0014287	-1.1518	-0.00073233	635.8293230326714	158.82	0.53041	158.82	158.61	159.14	0					16	10	2	0	0	0	0.02596	1	18589	18589		19.104	7.4676	1	120470			42516	8615	35119	35142	45983	45983					0.022547027949940457
PHFLDWFVPV	10	Unmodified	_PHFLDWFVPV_					0	0	0		ENST00000381348.4_2_22:42353689-42353893:+|nuORF;ENSG00000205704|ENST00000381348|SMIM45	ENST00000381348.4_2_22:42353689-42353893:+|nuORF	ENST00000381348.4_2_22:42353689-42353893:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	628.8303833007812	2	628.826766	1255.63898	1.7427	0.0010959	2.749	0.0017286	4.4917	0.0028245	628.828313412811	130.22	1.5226	130.22	129.77	131.29	0					72	31	4	0	0	0	0.56767	1	15084	15084		45.952	4.5253	1	2839100			42517	9081	35120	35143	45984	45984					0.02138595265364529
PHFLQFYT	8	Unmodified	_PHFLQFYT_					0	0	0			REV__ENST00000437364.2_1_1:47357320-47357608:+|nuORF	REV__ENST00000437364.2_1_1:47357320-47357608:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	526.7631225585938	2	526.763635	1051.51272	-1.1915	-0.00062765	0.38391	0.00020223	-0.80762	-0.00042542	526.7636529760721	120.92	1.9767	120.72	120.16	122.14	-0.19718					97	39	4	0	0	0	0.66704	3	11685	11661;11679;11685		50.025	4.9543	1	267620	+		42518	25792	35121	35144	45985;45986;45987	45987					-0.010979112399127189
PHFLQFYT	8	Unmodified	_PHFLQFYT_					0	0	0			REV__ENST00000437364.2_1_1:47357320-47357608:+|nuORF	REV__ENST00000437364.2_1_1:47357320-47357608:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.7630004882812	2	526.763635	1051.51272	-0.62952	-0.00033161	-0.29265	-0.00015416	-0.92217	-0.00048577	526.763355257348	122.03	2.1557	120.68	120.16	122.32	-1.3479					91	42	4	0	0	0	0.71369	1	11533	11533		40.573	3.4135	1	539000	+		42519	25792	35121	35144	45988	45988					-0.010979112399127189
PHGDRLVKH	9	Unmodified	_PHGDRLVKH_					0	0	0			REV__nc|ENSG00000130787|O75146-2|HIP1R	REV__nc|ENSG00000130787|O75146-2|HIP1R	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.7880249023438	2	529.796332	1057.57811	-1.7918	-0.00094927	0.34752	0.00018412	-1.4442	-0.00076515	529.7963685652077	87.418	0.9038	84.791	84.549	85.453	-2.6269					26	17	2	0	0	0	0.027462	1	7455	7455		16.473	5.6076	1	114630	+		42520	18971	35122	35145	45989	45989					0.05162503005794861
PHGMRGPPPL	10	Unmodified	_PHGMRGPPPL_					0	0	0		ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	MULTI-MSMS	OvCa9_classI_Rep2	2	529.7793579101562	2	529.781836	1057.54912	-3.4454	-0.0018253	-1.3495	-0.00071495	-4.7949	-0.0025403	529.7809225937738	148.32	1.151	148.1	147.87	149.02	-0.22697					44	22	3	0	0	0	0.80532	1	15006	15006		18.324	0.062328	1	49465			42521	5042	35123	35146	45990	45990					0.022646423851483632
PHGQAWRETL	10	Unmodified	_PHGQAWRETL_					0	0	0			REV__ENST00000469957.5_1_13:52342857-52348188:-|nuORF	REV__ENST00000469957.5_1_13:52342857-52348188:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	597.804931640625	2	597.804354	1193.59415	2.2847	0.0013658	-1.2359	-0.00073883	1.0488	0.00062697	597.8035095376144	82.788	0.98003	82.788	82.181	83.161	0					55	22	4	0	0	0	0.42962	1	8604	8604		64.207	2.0999	1	2837200	+		42522	17572	35124	35147	45991	45991					0.005101644520436821
PHHLVYKPL	9	Unmodified	_PHHLVYKPL_					0	0	0			REV__tr|A0A7D6VX14|A0A7D6VX14_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06395PE=4SV=1	REV__tr|A0A7D6VX14|A0A7D6VX14_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06395PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	553.308837890625	2	552.321651	1102.62875	-1.0907	-0.0006024	-3.3579	-0.0018546	-4.4486	-0.002457	552.3196737146685	62.586	0.81753	59.842	59.449	60.266	-2.7444					27	15	2	0	0	0	0.027462	1	4727	4727		20.482	3.1169	1	54974	+		42523	31761	35125	35148	45992	45992					0.08154032330776317
PHIFKGIKI	9	Unmodified	_PHIFKGIKI_					0	0	0		ENSG00000133962|ENST00000256343|CATSPERB	ENSG00000133962|ENST00000256343|CATSPERB	ENSG00000133962|ENST00000256343|CATSPERB	MULTI-SECPEP	OvCa9_classI_Rep2	2	527.7893676757812	2	526.834394	1051.65424	-0.49163	-0.00025901	-1.1049	-0.00058211	-1.5965	-0.00084112	526.8320416625822	69.753	1.7679	67.183	66.815	68.583	-2.5707					57	34	3	0	0	0	0.027462	1	5521	5521		23.042	13.337	1	983010			42524	4245	35126	35149	45993	45993					0.1304750685324052
PHIKDVPLL	9	Unmodified	_PHIKDVPLL_					0	0	0			REV__ENSG00000100485|ENST00000216373|SOS2	REV__ENSG00000100485|ENST00000216373|SOS2	MULTI-MSMS	OvCa9_classI_Rep3	3	516.3140869140625	2	516.316035	1030.61752	-5.397	-0.0027865	1.4148	0.00073048	-3.9822	-0.0020561	516.3166994253895	156.49	2.0589	155.32	154.75	156.81	-1.1707					101	49	4	0	0	0	0.69895	1	13516	13516		18.324	0.95945	1	710990	+		42525	17422	35127	35150	45994	45994					0.10343210236646883
PHIQTKNQ	8	Unmodified	_PHIQTKNQ_					0	0	0			REV__ENSG00000172352|ENST00000382407|CDY1B	REV__ENSG00000172352|ENST00000382407|CDY1B	MULTI-MSMS	OvCa9_classI_Rep2	2	483.26031494140625	2	483.261791	964.509028	3.1961	0.0015446	-3.3749	-0.001631	-0.17876	-8.6389E-05	483.26001752471973	25.718	0.79281	23.009	22.867	23.66	-2.7097					28	18	2	0	0	0	0.75241	1	309	309		25.45	2.4077	1	65601	+		42526	21688	35128	35151	45995	45995					0.025354189862468957
PHIQTQQNT	9	Unmodified	_PHIQTQQNT_					0	0	0		ENST00000580580.1_1_18:74694260-74695843:+|nuORF	ENST00000580580.1_1_18:74694260-74695843:+|nuORF	ENST00000580580.1_1_18:74694260-74695843:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	533.7677612304688	2	533.767437	1065.52032	2.0153	0.0010757	4.4485	0.0023745	6.4638	0.0034501	533.7697670334758	63.654	1.2917	60.66	60.204	61.496	-2.9933					43	25	2	0	0	0	0.67509	1	2420	2420		23.042	1.0826	1	38322			42527	13988	35129	35152	45996	45996					-0.009818037102832022
PHITLHPTI	9	Unmodified	_PHITLHPTI_					0	0	0		CNOT1|p.N1377H|1|0.32|ENSG00000125107|chr16:58545369-58545369|T/G|missense_variant	CNOT1|p.N1377H|1|0.32|ENSG00000125107|chr16:58545369-58545369|T/G|missense_variant	CNOT1|p.N1377H|1|0.32|ENSG00000125107|chr16:58545369-58545369|T/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.7803955078125	2	514.798009	1027.58147	-0.51317	-0.00026418	3.2454	0.0016707	2.7323	0.0014066	514.7995573975252	74.413	1.9658	71.182	70.386	72.351	-3.2308					74	40	3	0	0	0	0.027462	1	5831	5831		30.504	12.179	1	458310			42528	587	35130	35153	45997	45997					0.06877753059802671
PHKITKSSLLK	11	Unmodified	_PHKITKSSLLK_					0	0	0		nc|ENSG00000083223|Q5VYS8-6|TUT7;ENSG00000083223|ENST00000375963|TUT7;nc|ENSG00000083223|Q5VYS8-4|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	nc|ENSG00000083223|Q5VYS8-6|TUT7	MULTI-MSMS	OvCa9_classI_Rep3	3	626.3901977539062	2	626.392805	1250.77106	-6.1325	-0.0038414	-2.9926	-0.0018746	-9.1252	-0.0057159	626.3911365928932	165.03	1.5192	163.62	163.01	164.52	-1.4083					77	54	2	0	0	0	0.72505	1	14350	14350		14.865	0.72775	1	34340			42529	1689	35131	35154	45998	45998					0.15570200282309088
PHLALIILL	9	Unmodified	_PHLALIILL_					0	0	0		ENST00000223061.5_1_7:100199908-100200049:+|nuORF	ENST00000223061.5_1_7:100199908-100200049:+|nuORF	ENST00000223061.5_1_7:100199908-100200049:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	501.83966064453125	2	501.839146	1001.66374	1.8528	0.00092979	0.27296	0.00013698	2.1257	0.0010668	501.8390709617367	136.35	0.61411	136.35	136.11	136.73	0					21	12	2	0	0	0	0.53728	1	15897	15897		39.021	0	1	78773			42530	9701	35132	35155	45999	45999					0.16297275138776968
PHLAMMCALL	10	Unmodified	_PHLAMMCALL_					0	0	0		ENST00000502593.2_1_5:143131699-143132191:-|nuORF	ENST00000502593.2_1_5:143131699-143132191:-|nuORF	ENST00000502593.2_1_5:143131699-143132191:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.8585205078125	2	550.276683	1098.53881	1.4482	0.00079692	-3.5667	-0.0019627	-2.1185	-0.0011657	550.2747927470326	112.43	0.40985	112.43	112.16	112.57	0					13	8	2	0	0	0	0.027007	1	12797	12797		19.36	0	1	165500			42531	12851	35133	35156	46000	46000					-0.006514246559390813
PHLGESIYLD	10	Unmodified	_PHLGESIYLD_					0	0	0			REV__nc|ENSG00000132141|Q92526-3|CCT6B	REV__nc|ENSG00000132141|Q92526-3|CCT6B	MULTI-MSMS	OvCa9_classI_Rep2	2	572.2861938476562	2	572.287671	1142.56079	-1.4852	-0.00084994	-1.4521	-0.00083101	-2.9373	-0.001681	572.2866735153697	32.713	1.6873	30.003	29.53	31.218	-2.7097					70	33	3	0	0	0	0.31157	1	1120	1120		79.451	17.76	1	392360	+		42532	19054	35134	35157	46001	46001					-0.004788821105421448
PHLKKAMQT	9	Unmodified	_PHLKKAMQT_					0	0	0		nc|ENSG00000164815|O43913-2|ORC5;ENSG00000164815|ENST00000297431|ORC5	nc|ENSG00000164815|O43913-2|ORC5	nc|ENSG00000164815|O43913-2|ORC5	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.7677001953125	2	527.297319	1052.58008	1.8886	0.00099585	-4.376	-0.0023075	-2.4874	-0.0013116	527.29501020169	85.727	0.36816	85.727	85.502	85.87	0					12	8	2	0	0	0	0.027462	1	8980	8980		25.574	2.5316	1	197570			42533	6488	35135	35158	46002	46002					0.055897956993931075
PHLLCCHLHL	10	Unmodified	_PHLLCCHLHL_					0	0	0			REV__GJA8|p.S254Lfs*126|1|0.17|ENSG00000121634|chr1:147908713-147908714|-/C|frameshift_variant	REV__GJA8|p.S254Lfs*126|1|0.17|ENSG00000121634|chr1:147908713-147908714|-/C|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.9929809570312	2	593.304621	1184.59469	-0.29503	-0.00017504	1.1262	0.00066818	0.83117	0.00049314	593.8075245536309	69.533	0.36622	69.533	69.39	69.756	0					12	8	2	0	0	0	0.026672	1	6601	6601		44.531	1.6668	1	284600	+		42534	28157	35136	35159	46003	46003					0.00977544575880529
PHLLFKIS	8	Unmodified	_PHLLFKIS_					0	0	0		ENST00000228811.8_2_12:10998545-10999891:-|nuORF	ENST00000228811.8_2_12:10998545-10999891:-|nuORF	ENST00000228811.8_2_12:10998545-10999891:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.7646484375	2	477.792195	953.569838	1.7671	0.00084432	-3.9817	-0.0019024	-2.2146	-0.0010581	477.7901940197781	83.735	0.62991	83.735	83.463	84.093	0					23	14	2	0	0	0	0.028476	1	8747	8747		20.482	0	1	760420			42535	9715	35137	35160	46004	46004					0.09119556036466747
PHLLLGSHVGL	11	Unmodified	_PHLLLGSHVGL_					0	0	0			REV__nc|ENSG00000189067|Q99732-2|LITAF	REV__nc|ENSG00000189067|Q99732-2|LITAF	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.8226318359375	2	571.837665	1141.66078	0.20492	0.00011718	0.2864	0.00016377	0.49132	0.00028095	571.837908519266	73.847	0.19017	73.847	73.717	73.907	0					5	4	2	0	0	0	0.025853	1	7264	7264		20.947	6.0821	1	393190	+		42536	29068	35138	35161	46005	46005					0.09561400013944876
PHLLLKRKEWR	11	Unmodified	_PHLLLKRKEWR_					0	0	0			REV__ENST00000574951.5_1_17:4883279-4883390:-|nuORF	REV__ENST00000574951.5_1_17:4883279-4883390:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.6350402832031	3	492.636772	1474.88849	-6.2167	-0.0030626	1.2642	0.00062278	-4.9525	-0.0024398	492.6373104493484	162.25	1.447	160.62	160.35	161.8	-1.6239					85	40	3	0	0	0	0.72542	1	16073	16073		10.104	0.8921	1	49551	+		42537	27767	35139	35162	46006	46006					0.1700377794177257
PHLLPLDAAP	10	Unmodified	_PHLLPLDAAP_					0	0	0		ENST00000381031.7_1_22:46689034-46689478:+|nuORF	ENST00000381031.7_1_22:46689034-46689478:+|nuORF	ENST00000381031.7_1_22:46689034-46689478:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8023071289062	2	522.297842	1042.58113	1.7762	0.0009277	3.5091	0.0018328	5.2853	0.0027605	522.2989305714517	98.065	1.3683	98.065	97.008	98.376	0					49	31	3	0	0	0	0.026982	1	10681	10681		23.042	3.6825	1	852090			42538	11156	35140	35163	46007	46007					0.061543333399413314
PHLPALLLHR	10	Unmodified	_PHLPALLLHR_					0	0	0		ENSG00000171161|ENST00000306562|ZNF672	ENSG00000171161|ENST00000306562|ZNF672	ENSG00000171161|ENST00000306562|ZNF672	MULTI-MSMS	OvCa9_classI_Rep2	2	583.8590087890625	2	583.861475	1165.7084	-4.259	-0.0024867	-0.13514	-7.8902E-05	-4.3942	-0.0025656	583.8612282732444	154.9	1.2136	154.67	154.34	155.56	-0.22696					82	33	4	0	0	0	0.85907	1	15756	15756		11.511	0	1	148650			42539	7177	35141	35164	46008	46008					0.1321709900478254
PHLPHNSLP	9	Unmodified	_PHLPHNSLP_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.C4432Lfs*27|1|0.15|ENSG00000055609|chr7:152148633-152148634|-/AGCCTGTAATCCCAGCTACTCGGGAGGCTGAG|frameshift_variant;KMT2C|p.S2184Lfs*11|1|0.1|ENSG00000055609|chr7:152181310-152181310|A/-|frameshift_variant	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-MSMS	OvCa9_classI_Rep3	3	506.2742614746094	2	506.272158	1010.52976	1.7132	0.00086734	1.5295	0.00077434	3.2427	0.0016417	506.2727467608177	54.771	2.6321	51.6	50.779	53.411	-3.1715					173	88	3	0	0	0	0.67509	1	1375	1375		23.042	0	1	154000			42540	1222	35142	35165	46009	46009					0.024920093659034137
PHLQLALKRY	10	Unmodified	_PHLQLALKRY_					0	0	0			REV__ENSG00000090520|ENST00000265028|DNAJB11	REV__ENSG00000090520|ENST00000265028|DNAJB11	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8699340820312	2	619.87204	1237.72953	-3.6059	-0.0022352	-0.65337	-0.00040501	-4.2593	-0.0026402	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.67931	1	13079	13079		32.812	6.0163	1	664560	+		42541	17224	35143	35166	46010	46010					0.1201706431365892
PHLQVQHR	8	Unmodified	_PHLQVQHR_					0	0	0			REV__ENST00000256858.10_2_18:59854532-59854781:+|nuORF	REV__ENST00000256858.10_2_18:59854532-59854781:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.64263916015625	2	507.783225	1013.5519	-0.38552	-0.00019576	0.08751	4.4436E-05	-0.29801	-0.00015132	507.78311837122124	29.461	0.4976	29.461	29.288	29.785	0					20	9	3	0	0	0	0.028476	1	1063	1063		18.324	11.589	1	170160	+		42542	23897	35144	35167	46011	46011					0.04566233834327704
PHLSLVLVD	9	Unmodified	_PHLSLVLVD_					0	0	0		ENST00000515074.1_1_4:163244087-163244557:+|nuORF	ENST00000515074.1_1_4:163244087-163244557:+|nuORF	ENST00000515074.1_1_4:163244087-163244557:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	495.80206298828125	2	496.792392	991.570232	-0.55163	-0.00027404	-1.1565	-0.00057454	-1.7081	-0.00084858	496.79206050519997	115.62	1.0853	114.58	114.21	115.29	-1.0414					26	21	2	0	0	0	0.027462	1	8665	8665		33.516	0	1	52020			42543	13039	35145	35168	46012	46012					0.0741093096565919
PHLYEGDNL	9	Unmodified	_PHLYEGDNL_					0	0	0		ENSG00000068724|ENST00000319190|TTC7A;nc|ENSG00000068724|Q9ULT0-4|TTC7A;ENST00000491786.5_1_2:47205894-47301059:+|nuORF;ENST00000409825.5_1_2:47184044-47301059:+|nuORF;MSH2-TTC7A|4|fusion;MSH2-TTC7A|3|fusion;ENST00000484061.5_1_2:47221411-47251446:+|nuORF	ENSG00000068724|ENST00000319190|TTC7A	ENSG00000068724|ENST00000319190|TTC7A	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.790771484375	2	529.251089	1056.48762	-0.67661	-0.0003581	-0.015718	-8.3186E-06	-0.69233	-0.00036642	529.2511198244904	122.88	0.34554	122.67	122.51	122.86	-0.21803					10	6	2	0	0	0	0.027462	1	11908	11908		44.117	3.3386	1	11156			42544	1395	35146	35169	46013	46013					-0.03836010833151704
PHNVIILKH	9	Unmodified	_PHNVIILKH_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;nc|ENSG00000074755|O43149-2|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.8480834960938	2	535.827101	1069.63965	-1.4527	-0.00077841	4.0138	0.0021507	2.5611	0.0013723	535.8291004377585	46.288	1.2418	43.215	42.979	44.221	-3.0724					29	23	2	0	0	0	0.027462	1	2452	2452		17.365	0	1	54325			42545	1517	35147	35170	46014	46014					0.10761434705091233
PHPFDCLFP	9	Unmodified	_PHPFDCLFP_					0	0	0			REV__ENST00000371933.7_1_1:47183885-47184068:-|nuORF	REV__ENST00000371933.7_1_1:47183885-47184068:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.75732421875	2	536.74967	1071.48479	1.3154	0.00070606	3.5861	0.0019249	4.9016	0.0026309	536.7508829158959	149.86	0.59254	149.86	149.4	149.99	0					14	11	2	0	0	0	0.027462	1	17521	17521		44.531	22.829	1	20288	+		42546	24993	35148	35171	46015	46015					-0.04809557491648775
PHPGSVALPH	10	Unmodified	_PHPGSVALPH_					0	0	0		nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;ENSG00000005483|ENST00000311117|KMT2E	nc|ENSG00000005483|Q8IZD2-2|KMT2E	nc|ENSG00000005483|Q8IZD2-2|KMT2E	MULTI-MSMS	OvCa9_classI_Rep3	3	506.27386474609375	2	506.272158	1010.52976	1.7132	0.00086734	1.5295	0.00077434	3.2427	0.0016417	506.2727467608177	54.771	2.6321	51.6	50.779	53.411	-3.1715					173	88	3	0	0	0	0.49049	1	1461	1461		55.504	18.345	1	154000			42547	856	35149	35172	46016	46016					0.024920093658806763
PHPRRRLRRRR	11	Unmodified	_PHPRRRLRRRR_					0	0	0		ENST00000379026.6_1_19:36133589-36134644:+|nuORF	ENST00000379026.6_1_19:36133589-36134644:+|nuORF	ENST00000379026.6_1_19:36133589-36134644:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.2901611328125	3	519.329558	1554.96685	-1.3855	-0.00071951	2.0825	0.0010815	0.6971	0.00036202	519.3303191087233	27.316	0.19915	27.316	27.241	27.44	0					5	3	2	0	0	0	0.026505	1	791	791		5.6988	2.2901	1	6514.1			42548	11116	35150	35173	46017	46017					0.21156068090203917
PHPVLGCPPL	10	Unmodified	_PHPVLGCPPL_					0	0	0		ENST00000562350.1_1_16:58541595-58541769:+|nuORF	ENST00000562350.1_1_16:58541595-58541769:+|nuORF	ENST00000562350.1_1_16:58541595-58541769:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	515.2845458984375	2	515.281137	1028.54772	0.94125	0.00048501	1.2313	0.00063447	2.1726	0.0011195	515.2818157223961	106.61	4.2629	105.34	104.28	108.54	-1.267					165	82	5	0	0	0	0.79715	1	7560	7560		19.36	0	1	4317700			42549	13770	35151	35174	46018	46018					0.03459008296408683
PHPYPHWPPF	10	Unmodified	_PHPYPHWPPF_					0	0	0			REV__ENST00000467160.1_1_19:19757877-19758222:-|nuORF	REV__ENST00000467160.1_1_19:19757877-19758222:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	425.7754821777344	3	425.541697	1273.60326	-0.47732	-0.00020312	-3.8897	-0.0016552	-4.367	-0.0018583	425.54032298790605	69.594	0.7467	66.973	66.515	67.262	-2.6203					18	14	2	0	0	0	0.026891	1	5479	5479		39.253	0.53875	1	3949.3	+		42550	26199	35152	35175	46019	46019					-0.022594421916437568
PHQEQPVLKL	10	Unmodified	_PHQEQPVLKL_					0	0	0		ENST00000376804.2_2_1:11334013-11354999:+|nuORF	ENST00000376804.2_2_1:11334013-11354999:+|nuORF	ENST00000376804.2_2_1:11334013-11354999:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	595.3024291992188	2	594.840405	1187.66626	1.3977	0.00083142	0.91776	0.00054592	2.3155	0.0013773	595.3426122449507	113.92	0.453	113.92	113.7	114.15	0					15	9	3	0	0	0	0.026694	1	13005	13005		38.754	26.547	1	62719			42551	11081	35153	35176	46020	46020					0.07993078805748155
PHQGSILL	8	Unmodified	_PHQGSILL_					0	0	0		ENSG00000163623|ENST00000295886|NKX6-1	ENSG00000163623|ENST00000295886|NKX6-1	ENSG00000163623|ENST00000295886|NKX6-1	MULTI-MSMS	OvCa99_classI_Rep5	1	432.75048828125	2	432.750527	863.486502	-0.3006	-0.00013009	-0.04493	-1.9443E-05	-0.34553	-0.00014953	432.7504983057313	39.704	0.65375	39.704	39.547	40.2	0					20	14	3	0	0	0	0.35894	1	2358	2358		96.048	0	1	428930			42552	6335	35154	35177	46021	46021					0.049298195886080975
PHQVALLQL	9	Unmodified	_PHQVALLQL_					0	0	0		ENST00000595077.1_1_19:18701561-18701744:+|nuORF;ENST00000598375.5_1_19:18701561-18702987:+|nuORF	ENST00000595077.1_1_19:18701561-18701744:+|nuORF	ENST00000595077.1_1_19:18701561-18701744:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	509.80523681640625	2	509.805834	1017.59712	0.50237	0.00025611	-4.1061	-0.0020933	-3.6037	-0.0018372	509.80381764458934	161.69	0.61235	161.69	161.41	162.02	0					20	11	2	0	0	0	0.65476	1	18952	18952		25.45	0	1	46936			42553	14171	35155	35178	46022	46022					0.08902039576844345
PHQYLQSK	8	Unmodified	_PHQYLQSK_					0	0	0		ENST00000554048.2_1_19:57670623-57672140:-|nuORF	ENST00000554048.2_1_19:57670623-57672140:-|nuORF	ENST00000554048.2_1_19:57670623-57672140:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	500.76397705078125	2	500.764166	999.513779	-0.56475	-0.00028281	0.60774	0.00030434	0.042991	2.1528E-05	500.7643375735476	36.025	0.81929	36.025	35.799	36.618	0					38	17	4	0	0	0	0.65062	1	1871	1871		53.351	0.41475	1	752960			42554	13631	35156	35179	46023	46023					0.014003031290030776
PHRAPALPSI	10	Unmodified	_PHRAPALPSI_					0	0	0		ENSG00000269502|ENST00000615063|DMRTC1;ENSG00000184911|ENST00000334036|DMRTC1B	ENSG00000269502|ENST00000615063|DMRTC1	ENSG00000269502|ENST00000615063|DMRTC1	MULTI-MSMS	OvCa9_classI_Rep2	2	529.808349609375	2	529.808908	1057.60326	-0.30944	-0.00016395	-1.1024	-0.00058406	-1.4118	-0.000748	529.8082658364003	80.403	1.7105	78.708	78.37	80.08	-1.6951					93	32	4	0	0	0	0.59703	1	6816	6816		42.396	1.618	1	1665600			42555	8201	35157	35180	46024	46024					0.07676557808372309
PHRIMPITKQA	11	Unmodified	_PHRIMPITKQA_					0	0	0		ENSG00000171467|ENST00000361428|ZNF318;nc|ENSG00000171467|Q5VUA4-2|ZNF318;ZNF318|p.E1199Dfs*2|1|0.03|ENSG00000171467|chr6:43340401-43340401|C/-|frameshift_variant	ENSG00000171467|ENST00000361428|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	MULTI-SECPEP	OvCa9_classI_Rep4_	4	646.3461303710938	2	646.368807	1290.72306	-0.069117	-4.4675E-05	-3.0174	-0.0019504	-3.0866	-0.0019951	646.3663198204334	40.191	0.20324	37.237	37.112	37.315	-2.9541					5	3	2	0	0	0	0.025528	1	1712	1712		35.152	0	1	11183			42556	7198	35158	35181	46025	46025					0.08932803090624475
PHRRRRSI	8	Unmodified	_PHRRRRSI_					0	0	0			REV__nc|ENSG00000075275|Q9NYQ6|CELSR1	REV__nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.2863159179688	2	539.328665	1076.64278	-1.3708	-0.00073934	3.822	0.0020613	2.4511	0.001322	539.3305334167051	91.907	0.86397	89.364	89.162	90.026	-2.5425					25	16	3	0	0	0	0.028476	1	7976	7976		45.952	18.07	1	33808	+		42557	16968	35159	35182	46026	46026					0.10752122602457348
PHRSMNSLL	9	Unmodified	_PHRSMNSLL_					0	0	0			REV__ENSG00000081277|ENST00000367324|PKP1	REV__ENSG00000081277|ENST00000367324|PKP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.809814453125	2	527.776751	1053.53895	2.0882	0.0011021	0.36637	0.00019336	2.4545	0.0012955	527.7762959859573	91.563	1.2186	91.563	91.296	92.515	0					57	28	3	0	0	0	0.027462	1	9845	9845		29.15	10.825	1	595440	+		42558	17070	35160	35183	46027	46027					0.014320346599333789
PHSHLRLNGPF	11	Unmodified	_PHSHLRLNGPF_					0	0	0		ENST00000466900.5_1_3:37035370-37047454:+|nuORF	ENST00000466900.5_1_3:37035370-37047454:+|nuORF	ENST00000466900.5_1_3:37035370-37047454:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	425.562744140625	3	425.563273	1273.66799	-0.49907	-0.00021239	0.24547	0.00010446	-0.2536	-0.00010792	425.5633997861795	69.334	3.5142	66.713	66.068	69.582	-2.6203					206	68	5	0	0	0	0.62561	1	5494	5494		42.338	0.095499	1	1667000			42559	12300	35161	35184	46028	46028					0.0421013261434382
PHSLASFPR	9	Unmodified	_PHSLASFPR_					0	0	0		ENST00000347839.10_1_14:104159976-104160069:+|nuORF	ENST00000347839.10_1_14:104159976-104160069:+|nuORF	ENST00000347839.10_1_14:104159976-104160069:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	506.2746887207031	2	506.272158	1010.52976	1.7132	0.00086734	1.5295	0.00077434	3.2427	0.0016417	506.2727467608177	54.771	2.6321	51.6	50.779	53.411	-3.1715					173	88	3	0	0	0	0.59983	1	1404	1404		31.955	2.8053	1	154000			42560	10633	35162	35185	46029	46029					0.024920093659034137
PHSLWKPF	8	Unmodified	_PHSLWKPF_					0	0	0			REV__ENST00000423038.1_1_X:47132767-47133175:-|nuORF	REV__ENST00000423038.1_1_X:47132767-47133175:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	506.27392578125	2	506.27417	1010.53379	1.7132	0.00086734	-2.4434	-0.001237	-0.73024	-0.0003697	506.2727467608177	54.771	2.6321	51.6	50.779	53.411	-3.1715					173	88	3	0	0	0	0.73938	1	1468	1468		31.955	1.4512	1	154000	+		42561	19948	35163	35186	46030	46030					0.028940988595991257
PHSRPYMVLL	10	Unmodified	_PHSRPYMVLL_					0	0	0		nc|ENSG00000145649|P12544-2|GZMA;ENSG00000145649|ENST00000274306|GZMA	nc|ENSG00000145649|P12544-2|GZMA	nc|ENSG00000145649|P12544-2|GZMA	MULTI-SECPEP	OvCa99_classI_Rep5	1	606.3508911132812	2	606.831526	1211.6485	1.4807	0.00089853	-1.8669	-0.0011329	-0.38625	-0.00023439	607.3322789853999	119.4	0.4193	119.4	119.01	119.43	0					10	8	2	0	0	0	0.026871	1	13675	13675		15.642	0	1	107170			42562	5234	35164	35187	46031	46031					0.05114040279249821
PHSSPLALL	9	Unmodified	_PHSSPLALL_					0	0	0		ENST00000517495.1_1_8:41132739-41134502:-|nuORF	ENST00000517495.1_1_8:41132739-41134502:-|nuORF	ENST00000517495.1_1_8:41132739-41134502:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.7721862792969	2	467.77146	933.528367	0.86402	0.00040417	-1.1076	-0.00051808	-0.24353	-0.00011392	467.77078318123955	89.65	1.5432	87.075	86.413	87.956	-2.575					74	30	4	0	0	0	0.34496	1	7699	7699		57.811	2.3071	1	410380			42563	13056	35165	35188	46032	46032					0.058943752771256186
PHSYGVNLVL	10	Unmodified	_PHSYGVNLVL_					0	0	0			REV__tr|A0A553SH93|A0A553SH93_NIACILargeribosomalsubunitproteinuL6OS=NialliacirculansOX=1397GN=rplFPE=3SV=1	REV__tr|A0A553SH93|A0A553SH93_NIACILargeribosomalsubunitproteinuL6OS=NialliacirculansOX=1397GN=rplFPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.7680053710938	2	549.800749	1097.58694	1.9611	0.0010782	-0.57674	-0.00031709	1.3843	0.0007611	549.8006382132287	107.42	0.45927	107.42	107.19	107.65	0					14	10	2	0	0	0	0.026956	1	12124	12124		34.173	0	1	391570	+		42564	29785	35166	35189	46033	46033					0.04205431851596586
PHTAARTI	8	Unmodified	_PHTAARTI_					0	0	0		tr|A0A7D6VSA0|A0A7D6VSA0_9CLOTPhosphoglyceratedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04040PE=3SV=1	tr|A0A7D6VSA0|A0A7D6VSA0_9CLOTPhosphoglyceratedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04040PE=3SV=1	tr|A0A7D6VSA0|A0A7D6VSA0_9CLOTPhosphoglyceratedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04040PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	434.26220703125	2	433.745776	865.477	0.3626	0.00015728	0.25195	0.00010928	0.61455	0.00026656	433.74557681900967	47.279	1.1368	47.279	46.587	47.724	0					40	25	4	0	0	0	0.028476	1	3343	3343		24.203	0	1	194870			42565	35001	35167	35190	46034	46034					0.038880513030903785
PHTGIVISD	9	Unmodified	_PHTGIVISD_					0	0	0			REV__tr|A0A553SSY7|A0A553SSY7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03955PE=4SV=1	REV__tr|A0A553SSY7|A0A553SSY7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03955PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	469.7488708496094	2	469.750724	937.486896	0.26775	0.00012578	-3.5563	-0.0016706	-3.2885	-0.0015448	469.74901043394544	20.649	0.22526	20.649	20.551	20.776	0					12	8	2	0	0	0	0.69895	1	42	42		18.324	0	1	33885	+		42566	30894	35168	35191	46035	46035					0.01565194517809232
PHTVTWRKRV	10	Unmodified	_PHTVTWRKRV_					0	0	0		HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|327|2|anti-sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|327|2|anti-sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|327|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	427.87591552734375	3	427.250918	1278.73092	0.19978	8.5357E-05	3.933	0.0016804	4.1328	0.0017657	427.25277762667685	21.105	0.21781	19.766	19.646	19.864	-1.3386					7	4	2	0	0	0	0.027193	1	139	139		16.717	0	1	12894			42567	14403	35169	35192	46036	46036					0.10270698402405287
PHVHRPPSL	9	Unmodified	_PHVHRPPSL_					0	0	0		nc|ENSG00000129646|Q9H0J4-2|QRICH2;nc|ENSG00000129646|Q9H0J4|QRICH2;ENSG00000129646|ENST00000680821|QRICH2;nc|ENSG00000129646|Q9H0J4-3|QRICH2;ENST00000524722.1_2_17:74270319-74300575:-|nuORF	nc|ENSG00000129646|Q9H0J4-2|QRICH2	nc|ENSG00000129646|Q9H0J4-2|QRICH2	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.81201171875	2	520.293425	1038.5723	-1.1115	-0.00057833	-1.309	-0.00068107	-2.4205	-0.0012594	520.2932256664111	63.759	0.67662	63.759	63.455	64.132	0					31	16	4	0	0	0	0.027462	1	5797	5797		16.473	0	1	174740			42568	3939	35170	35193	46037	46037					0.054554044941369284
PHVISNGEIK	10	Unmodified	_PHVISNGEIK_					0	0	0		tr|A0A553STS6|A0A553STS6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_05635PE=4SV=1	tr|A0A553STS6|A0A553STS6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_05635PE=4SV=1	tr|A0A553STS6|A0A553STS6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_05635PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	547.3232421875	2	547.303655	1092.59276	0.26775	0.00014654	3.0342	0.0016606	3.3019	0.0018072	547.3055428411335	123.79	0.29581	123.56	123.34	123.63	-0.23193					7	5	2	0	0	0	0.027088	1	12012	12012		34.173	20.397	1	11096			42569	34527	35171	35194	46038	46038					0.050165303632638825
PHYRPQVP	8	Unmodified	_PHYRPQVP_					0	0	0		ENST00000492370.5_1_3:49724193-49724592:-|nuORF	ENST00000492370.5_1_3:49724193-49724592:-|nuORF	ENST00000492370.5_1_3:49724193-49724592:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	497.27081298828125	2	497.266876	992.519199	-0.32122	-0.00015973	3.7546	0.001867	3.4334	0.0017073	497.2684732356221	52.524	2.2183	52.524	51.953	54.172	0					131	51	3	0	0	0	0.69415	1	4218	4218		44.531	5.7249	1	1537400			42570	12724	35172	35195	46039	46039					0.022640267114638846
PIAALFIKD	9	Unmodified	_PIAALFIKD_					0	0	0		tr|A0A7D6VR99|A0A7D6VR99_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_01495PE=3SV=1	tr|A0A7D6VR99|A0A7D6VR99_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_01495PE=3SV=1	tr|A0A7D6VR99|A0A7D6VR99_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_01495PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.3236083984375	2	494.29731	986.580068	-0.39004	-0.0001928	-1.1496	-0.00056827	-1.5397	-0.00076106	494.2966790924709	117.4	1.4681	116.04	115.19	116.66	-1.3645					50	27	3	0	0	0	0.027462	1	10884	10884		35.618	6.4687	1	79589			42571	34906	35173	35196	46040	46040					0.08624118971022199
PIAEYFVPL	9	Unmodified	_PIAEYFVPL_					0	0	0		ENSG00000170871|ENST00000307659|KIAA0232	ENSG00000170871|ENST00000307659|KIAA0232	ENSG00000170871|ENST00000307659|KIAA0232	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.8082885742188	2	524.789318	1047.56408	-0.21184	-0.00011117	-3.6494	-0.0019151	-3.8612	-0.0020263	524.7872062904974	105.41	0.4371	105.41	105.22	105.66	0					17	9	3	0	0	0	0.027456	1	11831	11831		35.201	3.6709	1	396770			42572	7145	35174	35197	46041	46041					0.04220412734139245
PIAFRVAR	8	Unmodified	_PIAFRVAR_					0	0	0		ENST00000610158.1_1_10:25242209-25242413:+|nuORF	ENST00000610158.1_1_10:25242209-25242413:+|nuORF	ENST00000610158.1_1_10:25242209-25242413:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.2857971191406	2	465.287611	928.56067	-0.22764	-0.00010592	-4.1412	-0.0019268	-4.3688	-0.0020328	465.2855847072139	143.15	1.5248	141.71	141.35	142.88	-1.4427					87	29	5	0	0	0	0.75915	1	13995	13995		20.482	4.84	1	628240			42573	14309	35175	35198	46042	46042					0.09353207470803682
PIAGKLPE	8	Unmodified	_PIAGKLPE_					0	0	0			REV__ENSG00000198300|ENST00000326441|PEG3	REV__ENSG00000198300|ENST00000326441|PEG3	MULTI-MSMS	OvCa9_classI_Rep3	3	412.7458801269531	2	412.747453	823.480354	-0.0041108	-1.6967E-06	-3.0137	-0.0012439	-3.0178	-0.0012456	412.74611275073886	135.39	1.6252	134.28	133.62	135.24	-1.1076					83	32	4	0	0	0	0.73288	1	10995	10995		35.201	1.6851	1	589310	+		42574	23008	35176	35199	46043	46043					0.06155301357080134
PIAHIDPIGAI	11	Unmodified	_PIAHIDPIGAI_					0	0	0		tr|A0A553SI44|A0A553SI44_NIACISite-2proteasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_14160PE=3SV=1	tr|A0A553SI44|A0A553SI44_NIACISite-2proteasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_14160PE=3SV=1	tr|A0A553SI44|A0A553SI44_NIACISite-2proteasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_14160PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.8153686523438	2	558.824224	1115.63389	1.733	0.00096846	-1.9542	-0.0010921	-0.22117	-0.0001236	558.8229594051423	149.72	0.60114	149.72	149.44	150.05	0					19	11	2	0	0	0	0.025853	1	17496	17496		27.882	0	1	66426			42575	33341	35177	35200	46044	46044					0.08070291402759722
PIAPGAACRRR	11	Unmodified	_PIAPGAACRRR_					0	0	0		ENST00000375251.7_1_9:99212589-99246760:+|nuORF	ENST00000375251.7_1_9:99212589-99246760:+|nuORF	ENST00000375251.7_1_9:99212589-99246760:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.342041015625	2	584.330016	1166.64548	0.45244	0.00026437	-1.3057	-0.00076297	-0.85328	-0.00049859	584.329631310022	141.55	0.29845	141.55	141.44	141.74	0					6	5	2	0	0	0	0.025496	1	16540	16540		19.104	0	1	12953			42576	11053	35178	35201	46045	46045					0.06882209945092654
PIAPLFLHLL	10	Unmodified	_PIAPLFLHLL_					0	0	0			REV__ENST00000580377.2_1_17:26904629-26904698:-|nuORF	REV__ENST00000580377.2_1_17:26904629-26904698:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	567.3587646484375	2	567.357702	1132.70085	1.0899	0.00061836	0.73503	0.00041703	1.8249	0.0010354	567.3579662194804	157.32	1.3723	157.32	157	158.37	0					74	27	4	0	0	0	0.49566	1	18445	18445		54.765	6.8051	1	864840	+		42577	27820	35179	35202	46046	46046					0.13980946684523587
PIASTIVPA	9	Unmodified	_PIASTIVPA_					0	0	0			REV__ENSG00000184271|ENST00000333640|POU6F1	REV__ENSG00000184271|ENST00000333640|POU6F1	MULTI-MSMS	OvCa9_classI_Rep2	2	434.759521484375	2	434.760561	867.506569	-0.54476	-0.00023684	-2.3576	-0.001025	-2.9023	-0.0012618	434.7594502813862	138.35	2.0585	138.12	137.54	139.6	-0.22697					104	41	4	0	0	0	0.6959	1	13876	13876		19.36	0	1	279250	+		42578	22417	35180	35203	46047	46047					0.06751570528570028
PIASYCTE	8	Unmodified	_PIASYCTE_					0	0	0			REV__nc|ENSG00000136068|O75369-8|FLNB	REV__nc|ENSG00000136068|O75369-8|FLNB	MULTI-MSMS	OvCa99_classI_Rep5	1	442.1979064941406	2	442.196936	882.379319	0.87636	0.00038752	1.5499	0.00068538	2.4263	0.0010729	442.19686435791056	68.641	1.5662	68.641	68.274	69.84	0					58	37	2	0	0	0	0.69415	1	6469	6469		44.531	9.3304	1	5325400	+		42579	19356	35181	35204	46048	46048					-0.06657518407939733
PICCLIIIF	9	Unmodified	_PICCLIIIF_					0	0	0			REV__nc|ENSG00000150275|Q96QU1-2|PCDH15	REV__nc|ENSG00000150275|Q96QU1-2|PCDH15	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.2615356445312	2	517.792492	1033.57043	-0.57973	-0.00030018	-3.2275	-0.0016712	-3.8072	-0.0019713	517.7907298762344	56.401	1.685	53.597	53.126	54.811	-2.804					59	33	2	0	0	0	0.027462	1	3924	3924		29.842	3.0454	1	107630	+		42580	26124	35182	35205	46049	46049					0.05498891369643388
PIDCGVGYFLL	11	Unmodified	_PIDCGVGYFLL_					0	0	0			REV__NF1-RAB11FIP4|2|fusion;REV__NF1|p.M1949Ifs*2|1|0.67|ENSG00000196712|chr17:31334870-31334888|ATGACTCCATGGCTGTCAA/-|frameshift_variant	REV__NF1|p.M1949Ifs*2|1|0.67|ENSG00000196712|chr17:31334870-31334888|ATGACTCCATGGCTGTCAA/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	599.7777709960938	2	598.804642	1195.59473	1.3939	0.00083467	3.3065	0.0019799	4.7004	0.0028146	598.8062109827321	144.88	1.3699	144.88	144.31	145.68	0					45	28	3	0	0	0	0.025611	1	16883	16883		14.865	0	1	146230	+		42581	22859;29248	35183	35206	46050	46050					0.00475823056876834
PIDIKKLVEI	10	Unmodified	_PIDIKKLVEI_					0	0	0			REV__ENSG00000082996|ENST00000392894|RNF13	REV__ENSG00000082996|ENST00000392894|RNF13	MULTI-SECPEP	OvCa9_classI_Rep4_	4	584.3562622070312	2	584.371007	1166.72746	-1.7409	-0.0010173	4.2176	0.0024646	2.4766	0.0014473	584.8750542469047	145.8	0.1481	144.37	144.29	144.44	-1.4357					4	2	2	0	0	0	0.027118	1	14315	14315		19.104	0	1	5611.2	+		42582	17092	35184	35207	46051	46051					0.15076590785179178
PIDLAKTRLQN	11	Unmodified	_PIDLAKTRLQN_					0	0	0		ENSG00000182902|ENST00000327451|SLC25A18;ENST00000532361.5_1_11:794242-795006:-|nuORF;ENSG00000177542|ENST00000628067|SLC25A22	ENSG00000182902|ENST00000327451|SLC25A18	ENSG00000182902|ENST00000327451|SLC25A18	MULTI-MSMS	OvCa9_classI_Rep2	2	423.58258056640625	3	423.582221	1267.72483	-0.1009	-4.2738E-05	0.034116	1.4451E-05	-0.06678	-2.8287E-05	423.58218120871413	69.894	1.7209	67.324	66.915	68.635	-2.5707					95	33	4	0	0	0	0.65267	1	5581	5581		39.873	0	1	510120			42583	8037	35185	35208	46052	46052					0.10168135380240528
PIDLAKTRLQN	11	Unmodified	_PIDLAKTRLQN_					0	0	0		ENSG00000182902|ENST00000327451|SLC25A18;ENST00000532361.5_1_11:794242-795006:-|nuORF;ENSG00000177542|ENST00000628067|SLC25A22	ENSG00000182902|ENST00000327451|SLC25A18	ENSG00000182902|ENST00000327451|SLC25A18	MULTI-MATCH	OvCa9_classI_Rep3	3		3	423.582221	1267.72483	1.1548	0.00048916	-1.2481	-0.00052868	-0.093302	-3.9521E-05	423.58168390069335	70.156	1.2103	67.437	67.105	68.316	-2.7196	0.013686	-0.001283	NaN	39.873	58	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147680			42584	8037	35185	35208							0.10168135380240528
PIDLAKTRLQN	11	Unmodified	_PIDLAKTRLQN_					0	0	0		ENSG00000182902|ENST00000327451|SLC25A18;ENST00000532361.5_1_11:794242-795006:-|nuORF;ENSG00000177542|ENST00000628067|SLC25A22	ENSG00000182902|ENST00000327451|SLC25A18	ENSG00000182902|ENST00000327451|SLC25A18	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	423.582221	1267.72483	-0.83317	-0.00035292	0.82539	0.00034962	-0.0077791	-3.2951E-06	423.5824900296816	70.965	1.3054	67.509	67.155	68.46	-3.4563	0.085806	0.0013519	NaN	39.873	78	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	765420			42585	8037	35185	35208							0.10168135380240528
PIDSLYVGMF	10	Unmodified	_PIDSLYVGMF_					0	0	0		ENST00000457714.5_1_3:173322345-173322534:+|nuORF	ENST00000457714.5_1_3:173322345-173322534:+|nuORF	ENST00000457714.5_1_3:173322345-173322534:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.2972412109375	2	571.283543	1140.55253	2.111	0.001206	0.013113	7.4915E-06	2.1241	0.0012135	571.2833425449145	95.793	0.38257	95.793	95.615	95.997	0					11	8	2	0	0	0	0.027084	1	10469	10469		31.955	13.693	1	494410			42586	12131	35186	35209	46053	46053					-0.012121523515133958
PIDSNARIRKL	11	Unmodified	_PIDSNARIRKL_					0	0	0			REV__tr|A0A553SPG5|A0A553SPG5_NIACICamSfamilysexpheromoneproteinOS=NialliacirculansOX=1397GN=CEQ21_26380PE=4SV=1	REV__tr|A0A553SPG5|A0A553SPG5_NIACICamSfamilysexpheromoneproteinOS=NialliacirculansOX=1397GN=CEQ21_26380PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8814086914062	2	641.883136	1281.75172	-4.6434	-0.0029805	3.7859	0.0024301	-0.85746	-0.00055039	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.70142	1	15480	15480		29.17	4.6509	1	543390	+		42587	30534	35187	35210	46054	46054					0.12211243991396259
PIEIEPIIM	9	Unmodified	_PIEIEPIIM_					0	0	0			REV__tr|A0A553SSE7|A0A553SSE7_NIACIBacterialIgdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02835PE=4SV=1	REV__tr|A0A553SSE7|A0A553SSE7_NIACIBacterialIgdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02835PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.8187255859375	2	527.796286	1053.57802	-2.239	-0.0011817	-4.2412	-0.0022385	-6.4802	-0.0034202	527.7939420540383	62.952	1.2041	60.207	59.745	60.949	-2.7444					47	22	3	0	0	0	0.027462	1	4776	4776		31.955	7.4357	1	74790	+		42588	30831	35188	35211	46055	46055					0.05337322170930747
PIEIVKINKN	10	Unmodified	_PIEIVKINKN_					0	0	0			REV__tr|A0A7D6ZJS9|A0A7D6ZJS9_9CLOTDUF4275familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09610PE=4SV=1	REV__tr|A0A7D6ZJS9|A0A7D6ZJS9_9CLOTDUF4275familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09610PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	584.3560791015625	2	584.358431	1166.70231	-4.6254	-0.0027029	1.1397	0.00066599	-3.4857	-0.0020369	584.3589865391973	145.25	4.5766	144.28	142.9	147.48	-0.97299					233	91	4	0	0	0	0.72319	1	12133	12133		27.882	4.3595	1	156220	+		42589	32090	35189	35212	46056	46056					0.1256253598260173
PIELGLHKMLR	11	Unmodified	_PIELGLHKMLR_					0	0	0			REV__nc|ENSG00000077463|Q8N6T7-2|SIRT6	REV__nc|ENSG00000077463|Q8N6T7-2|SIRT6	MULTI-MSMS	OvCa9_classI_Rep3	3	436.2615661621094	3	436.260314	1305.75911	1.694	0.00073904	0.86623	0.0003779	2.5603	0.0011169	436.26077678089143	64.483	2.8395	61.49	61.14	63.98	-2.9933					174	55	5	0	0	0	0.70315	1	2519	2519		28.577	0.93281	1	3808000	+		42590	17012	35190	35213	46057	46057					0.11846260267475373
PIELTQNIE	9	Unmodified	_PIELTQNIE_					0	0	0			REV__ENSG00000153283|ENST00000352690|CD96	REV__ENSG00000153283|ENST00000352690|CD96	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.2993774414062	2	528.782222	1055.54989	-0.041562	-2.1977E-05	1.0793	0.00057071	1.0377	0.00054873	528.7826631139928	31.782	0.64546	31.782	31.608	32.254	0					21	12	2	0	0	0	0.027462	1	1382	1382		32.812	24.577	1	223650	+		42591	20334	35191	35214	46058	46058					0.02433715515167023
PIEPIAEPPE	10	Unmodified	_PIEPIAEPPE_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.283447265625	2	546.284597	1090.55464	3.1144	0.0017013	-4.3618	-0.0023828	-1.2474	-0.00068143	546.2819949876904	133.51	1.2273	131.98	131.61	132.83	-1.5257					60	24	4	0	0	0	0.46756	1	12882	12882		58.782	0.55203	1	129180	+		42592	28942;32737	35192	35215	46059	46059					0.012985996579345738
PIETLPLGYV	10	Unmodified	_PIETLPLGYV_					0	0	0			REV__tr|A0A7D7AF69|A0A7D7AF69_9CLOTSulfiteexporterTauE/SafEfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04860PE=4SV=1	REV__tr|A0A7D7AF69|A0A7D7AF69_9CLOTSulfiteexporterTauE/SafEfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04860PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.3103637695312	2	551.313158	1100.61176	-0.37818	-0.00020849	-4.0913	-0.0022556	-4.4695	-0.0024641	551.3108232441903	143.73	1.3553	142.28	141.89	143.25	-1.4427					66	25	4	0	0	0	0.76627	1	14136	14136		23.042	5.6775	1	191320	+		42593	32711	35193	35216	46060	46060					0.06548066934328745
PIEVAEKIPE	10	Unmodified	_PIEVAEKIPE_					0	0	0		nc|ENSG00000155966|P51816-2|AFF2;nc|ENSG00000155966|P51816-6|AFF2;nc|ENSG00000155966|P51816-3|AFF2;nc|ENSG00000155966|P51816-5|AFF2;ENSG00000155966|ENST00000370460|AFF2;nc|ENSG00000155966|P51816-7|AFF2	nc|ENSG00000155966|P51816-2|AFF2	nc|ENSG00000155966|P51816-2|AFF2	MULTI-MSMS	OvCa9_classI_Rep3	3	562.8150634765625	2	562.813522	1123.61249	-2.633	-0.0014819	2.4421	0.0013745	-0.19089	-0.00010744	562.8147781508586	141.55	1.4859	140.54	140.19	141.68	-1.0106					91	29	5	0	0	0	0.50999	1	11689	11689		52.937	13.684	1	322010			42594	5813	35194	35217	46061	46061					0.05562861583371159
PIFGHRRLSL	10	Unmodified	_PIFGHRRLSL_					0	0	0		ENST00000593075.1_1_19:36605959-36606043:+|nuORF	ENST00000593075.1_1_19:36605959-36606043:+|nuORF	ENST00000593075.1_1_19:36605959-36606043:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	598.3551635742188	2	598.356557	1194.69856	1.7755	0.0010624	-3.4479	-0.0020631	-1.6724	-0.0010007	598.3545660159793	114.03	1.2623	112.97	112.68	113.95	-1.055					65	24	4	0	0	0	0.6349	1	8401	8401		37.812	0.30334	1	254140			42595	14149	35195	35218	46062	46062					0.10899910999432905
PIFIRRNL	8	Unmodified	_PIFIRRNL_					0	0	0			REV__ENSG00000165899|ENST00000547103|OTOGL	REV__ENSG00000165899|ENST00000547103|OTOGL	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.2822875976562	2	514.821818	1027.62908	-0.71431	-0.00036774	-1.2418	-0.00063929	-1.9561	-0.001007	514.8210622744498	103.47	0.44442	102.78	102.53	102.97	-0.68459					12	8	2	0	0	0	0.028476	1	9558	9558		26.796	5.8492	1	21243	+		42596	21135	35196	35219	46063	46063					0.11637452050649699
PIFLLVVLSQV	11	Unmodified	_PIFLLVVLSQV_					0	0	0		nc|ENSG00000137491|O94956-3|SLCO2B1;ENSG00000137491|ENST00000289575|SLCO2B1;ENST00000531756.5_1_11:74862426-74914042:+|nuORF;nc|ENSG00000137491|O94956-2|SLCO2B1;nc|ENSG00000137491|O94956-4|SLCO2B1	nc|ENSG00000137491|O94956-3|SLCO2B1	nc|ENSG00000137491|O94956-3|SLCO2B1	MULTI-MSMS	OvCa9_classI_Rep4_	4	614.3841552734375	2	614.389199	1226.76385	-5.2638	-0.003234	-1.3389	-0.00082259	-6.6027	-0.0040566	614.3881829227306	157.6	1.278	156.06	155.71	156.98	-1.545					89	35	4	0	0	0	0.72473	1	15617	15617		19.104	1.6355	1	332270			42597	4588	35197	35220	46064	46064					0.15953467681879374
PIFLPCTLT	9	Unmodified	_PIFLPCTLT_					0	0	0			REV__nc|ENSG00000133466|Q9BXI9-3|C1QTNF6	REV__nc|ENSG00000133466|Q9BXI9-3|C1QTNF6	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.78240966796875	2	502.777896	1003.54124	-0.51839	-0.00026064	3.7052	0.0018629	3.1868	0.0016022	502.77972325100257	40.406	0.73114	40.406	40.106	40.838	0					41	15	4	0	0	0	0.027462	1	2474	2474		21.96	0	1	760020	+		42598	26265	35198	35221	46065	46065					0.03961070345008011
PIFVVFSPL	9	Unmodified	_PIFVVFSPL_					0	0	0		L1P1_dup3131|chr21:8366255-8369545:+|1.1341358509163533|0.0129397411743262|6.45|422.0|150|2|anti-sense	L1P1_dup3131|chr21:8366255-8369545:+|1.1341358509163533|0.0129397411743262|6.45|422.0|150|2|anti-sense	L1P1_dup3131|chr21:8366255-8369545:+|1.1341358509163533|0.0129397411743262|6.45|422.0|150|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	509.80322265625	2	509.802229	1017.5899	-0.41042	-0.00020923	3.4351	0.0017512	3.0247	0.001542	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.6959	1	13518	13518		19.36	2.8868	1	150140			42599	14635	35199	35222	46066	46066					0.08181306976428004
PIGALRKVVR	10	Unmodified	_PIGALRKVVR_					0	0	0			REV__ENSG00000198720|ENST00000394859|ANKRD13B	REV__ENSG00000198720|ENST00000394859|ANKRD13B	MULTI-MSMS	OvCa9_classI_Rep2	2	554.868896484375	2	554.8693	1107.72405	-1.9281	-0.0010698	1.7342	0.00096224	-0.19392	-0.0001076	554.8701070642081	36.184	1.0367	33.474	33.251	34.287	-2.7097					47	20	3	0	0	0	0.71192	1	1543	1543		29.15	1.2673	1	161970	+		42600	23050	35200	35223	46067	46067					0.17449385521831573
PIGDKLMMDI	10	Unmodified	_PIGDKLMMDI_					0	0	0			REV__tr|A0A553STU0|A0A553STU0_NIACID-alanine--D-alanineligaseOS=NialliacirculansOX=1397GN=ddlPE=3SV=1	REV__tr|A0A553STU0|A0A553STU0_NIACID-alanine--D-alanineligaseOS=NialliacirculansOX=1397GN=ddlPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	566.808837890625	2	566.790678	1131.5668	-1.2132	-0.00068761	0.87621	0.00049663	-0.33695	-0.00019098	566.7908130438524	54.596	0.44858	51.782	51.523	51.972	-2.8139					9	8	2	0	0	0	0.02676	1	3757	3757		41.427	1.3684	1	9411.4	+		42601	31012	35201	35224	46068	46068					0.006281768051394465
PIGKQCRLR	9	Unmodified	_PIGKQCRLR_					0	0	0			REV__TBC1D10A|p.A323Pfs*34|1|0.53|ENSG00000099992|chr22:30293734-30293734|C/-|frameshift_variant	REV__TBC1D10A|p.A323Pfs*34|1|0.53|ENSG00000099992|chr22:30293734-30293734|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.7947387695312	2	535.81621	1069.61787	-1.9278	-0.001033	-1.9741	-0.0010578	-3.9019	-0.0020907	535.8150425058981	43.149	0.57833	40.141	40.01	40.589	-3.0074					12	10	2	0	0	0	0.027462	1	2039	2039		23.042	0	1	21148	+		42602	17349	35202	35225	46069	46069					0.08584306684861076
PIGLARLEES	10	Unmodified	_PIGLARLEES_					0	0	0			REV__ENST00000534035.1_1_11:44102597-44105415:+|nuORF	REV__ENST00000534035.1_1_11:44102597-44105415:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.2745971679688	2	542.803488	1083.59242	-0.25761	-0.00013983	1.0239	0.00055576	0.76625	0.00041593	542.8039215843002	41.022	0.61961	41.022	40.711	41.33	0					20	13	2	0	0	0	0.027021	1	2497	2497		21.96	3.6355	1	41073	+		42603	17987	35203	35226	46070	46070					0.053971106434119065
PIGLDYVTINL	11	Unmodified	_PIGLDYVTINL_					0	0	0			REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.2497253417969	3	406.564056	1216.67034	0.66724	0.00027127	-2.1088	-0.00085737	-1.4416	-0.0005861	406.5630706181259	39.441	0.73211	39.441	39.151	39.883	0					47	16	4	0	0	0	0.025338	1	2302	2302		39.873	16.495	1	2313000	+		42604	17113	35204	35227	46071	46071					0.0706712350881844
PIGRFPIVL	9	Unmodified	_PIGRFPIVL_					0	0	0		tr|A0A553SNJ0|A0A553SNJ0_NIACIDNAmismatchrepairproteinMutLOS=NialliacirculansOX=1397GN=mutLPE=3SV=1	tr|A0A553SNJ0|A0A553SNJ0_NIACIDNAmismatchrepairproteinMutLOS=NialliacirculansOX=1397GN=mutLPE=3SV=1	tr|A0A553SNJ0|A0A553SNJ0_NIACIDNAmismatchrepairproteinMutLOS=NialliacirculansOX=1397GN=mutLPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	506.3182678222656	2	506.32112	1010.62769	-0.7007	-0.00035478	-3.6811	-0.0018638	-4.3818	-0.0022186	506.31921288144724	59.031	1.6985	56.251	55.74	57.438	-2.7801					106	32	5	0	0	0	0.47884	1	4265	4265		44.531	2.0566	1	1253400			42605	33928	35205	35228	46072	46072					0.122798179618826
PIGRGTKVIL	10	Unmodified	_PIGRGTKVIL_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88813329-88813827:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OvCa99_classI_Rep5	1	527.3434448242188	2	527.342584	1052.67061	-1.2508	-0.00065959	0.76307	0.0004024	-0.48771	-0.00025719	527.3428619683842	70.187	0.56584	70.187	69.922	70.488	0					29	13	3	0	0	0	0.11378	1	6714	6714		110.12	19.343	1	2282300			42606	1946	35206	35229	46073	46073					0.1463858801932929
PIGRGTKVIL	10	Unmodified	_PIGRGTKVIL_					0	0	0		ENSG00000096384|ENST00000371646|HSP90AB1;nc|ENSG00000183199|Q58FF7|HSP90AB3P;ENST00000505987.1_1_4:88813329-88813827:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	527.342584	1052.67061	-1.7171	-0.00090548	-1.8849	-0.00099397	-3.6019	-0.0018994	527.3425263164055	73.319	0.33921	69.923	69.785	70.124	-3.3961	-0.13202	-0.0026051	NaN	110.12	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14690			42607	1946	35206	35229							0.1463858801932929
PIHIYVAL	8	Unmodified	_PIHIYVAL_					0	0	0			REV__ENSG00000140450|ENST00000268042|ARRDC4	REV__ENSG00000140450|ENST00000268042|ARRDC4	MULTI-MSMS	OvCa9_classI_Rep2	2	463.27679443359375	2	463.278921	924.543289	-0.62606	-0.00029004	-3.9055	-0.0018093	-4.5316	-0.0020994	463.27705603624554	74.992	1.8677	73.021	72.376	74.244	-1.9711					93	35	4	0	0	0	0.58426	2	6167	6167;6175		67.327	12.433	1	495750	+		42608	19672	35207	35230	46074;46075	46074					0.0779986714513825
PIHIYVAL	8	Unmodified	_PIHIYVAL_					0	0	0			REV__ENSG00000140450|ENST00000268042|ARRDC4	REV__ENSG00000140450|ENST00000268042|ARRDC4	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.2779846191406	2	463.278921	924.543289	-0.39295	-0.00018205	-4.4717	-0.0020716	-4.8646	-0.0022537	463.27682376212437	75.898	2.0127	72.959	72.497	74.51	-2.9389					92	41	4	0	0	0	0.58426	1	6009	6009		67.327	0	1	1343400	+		42609	19672	35207	35230	46076	46076					0.0779986714513825
PIHLKKCLI	9	Unmodified	_PIHLKKCLI_					0	0	0			REV__ENSG00000174944|ENST00000309170|P2RY14	REV__ENSG00000174944|ENST00000309170|P2RY14	MULTI-SECPEP	OvCa9_classI_Rep2	2	532.8081665039062	2	532.83608	1063.65761	-1.6387	-0.00087316	-0.81535	-0.00043445	-2.4541	-0.0013076	532.8357787326861	76.294	0.263	74.44	74.308	74.571	-1.854					7	4	2	0	0	0	0.027462	1	6297	6297		25.45	1.2474	1	22564	+		42610	21860	35208	35231	46077	46077					0.1283243363557176
PIHLVTDYG	9	Unmodified	_PIHLVTDYG_					0	0	0		sp|P16785|LTP_HCMVALargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL48PE=1SV=1	sp|P16785|LTP_HCMVALargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL48PE=1SV=1	sp|P16785|LTP_HCMVALargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL48PE=1SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.81536865234375	2	507.766374	1013.5182	0.59224	0.00030072	-4.3554	-0.0022115	-3.7632	-0.0019108	507.7639174704297	35.379	1.0489	32.53	32.19	33.238	-2.849					39	20	4	0	0	0	0.027462	1	1102	1102		35.201	9.7505	1	43599			42611	32899	35209	35232	46078	46078					0.01197767551900597
PIHNLKYHG	9	Unmodified	_PIHNLKYHG_					0	0	0			REV__tr|A0A7D6VTH6|A0A7D6VTH6_9CLOTM48familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09035PE=3SV=1	REV__tr|A0A7D6VTH6|A0A7D6VTH6_9CLOTM48familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09035PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.3080444335938	2	539.793258	1077.57196	2.5604	0.0013821	-4.3224	-0.0023332	-1.762	-0.00095113	539.7908355422802	130.86	0.85651	129.39	129.11	129.96	-1.4779					24	17	2	0	0	0	0.027462	1	12542	12542		38.806	0	1	19465	+		42612	31604	35210	35233	46079	46079					0.03627984774266224
PIHRILIPS	9	Unmodified	_PIHRILIPS_					0	0	0			REV__VPS18|p.F792Cfs*167|1|0.15|ENSG00000104142|chr15:40902793-40902794|-/GTGGCAGCGGCAGGCCCCCTTGC|frameshift_variant	REV__VPS18|p.F792Cfs*167|1|0.15|ENSG00000104142|chr15:40902793-40902794|-/GTGGCAGCGGCAGGCCCCCTTGC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8154907226562	2	523.329476	1044.6444	1.1758	0.00061533	-0.515	-0.00026952	0.6608	0.00034582	523.3288990923572	107.17	0.54446	107.17	106.97	107.52	0					16	12	3	0	0	0	0.027462	1	12125	12125		30.504	0	1	378800	+		42613	17647	35211	35234	46080	46080					0.12386318847870825
PIHTSGGILVI	11	Unmodified	_PIHTSGGILVI_					0	0	0			REV__ENST00000485881.1_1_3:137599977-137600205:+|nuORF	REV__ENST00000485881.1_1_3:137599977-137600205:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	553.83056640625	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.68263	1	11826	11826		35.618	4.0885	1	308210	+		42614	26573	35212	35235	46081	46081					0.10094577919812764
PIIAEVGRSLI	11	Unmodified	_PIIAEVGRSLI_					0	0	0			REV__tr|A0A553SS38|A0A553SS38_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_02370PE=3SV=1	REV__tr|A0A553SS38|A0A553SS38_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_02370PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3570556640625	2	584.358431	1166.70231	-0.5033	-0.0002941	-2.654	-0.0015509	-3.1573	-0.001845	584.3567763295431	142.42	4.015	140.98	138.81	142.83	-1.4427					242	77	4	0	0	0	0.71498	1	14047	14047		24.519	3.5723	1	214670	+		42615	30800	35213	35236	46082	46082					0.1256253598260173
PIIAKRVH	8	Unmodified	_PIIAKRVH_					0	0	0			REV__tr|A0A553SII4|A0A553SII4_NIACIUTP--glucose-1-phosphateuridylyltransferaseOS=NialliacirculansOX=1397GN=galUPE=3SV=1	REV__tr|A0A553SII4|A0A553SII4_NIACIUTP--glucose-1-phosphateuridylyltransferaseOS=NialliacirculansOX=1397GN=galUPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	467.30023193359375	2	467.303262	932.59197	-2.6989	-0.0012612	-1.7541	-0.00081971	-4.453	-0.0020809	467.3023498206503	147.52	1.7467	147.29	146.82	148.57	-0.22696					88	34	4	0	0	0	0.74595	2	14896	14891;14896		20.482	0	1	302680	+		42616	29894	35214	35237	46083;46084	46084					0.12297780504889033
PIIAKRVH	8	Unmodified	_PIIAKRVH_					0	0	0			REV__tr|A0A553SII4|A0A553SII4_NIACIUTP--glucose-1-phosphateuridylyltransferaseOS=NialliacirculansOX=1397GN=galUPE=3SV=1	REV__tr|A0A553SII4|A0A553SII4_NIACIUTP--glucose-1-phosphateuridylyltransferaseOS=NialliacirculansOX=1397GN=galUPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.29931640625	2	467.303262	932.59197	-1.8409	-0.00086028	-2.653	-0.0012397	-4.4939	-0.0021	467.30195282681905	148.29	1.8981	146.85	146.48	148.37	-1.435					87	38	4	0	0	0	0.75915	1	14613	14613		20.482	5.8177	1	733350	+		42617	29894	35214	35237	46085	46085					0.12297780504889033
PIIASDVGGN	10	Unmodified	_PIIASDVGGN_					0	0	0		tr|A0A7D6VYS7|A0A7D6VYS7_9CLOTProbablechemoreceptorglutaminedeamidaseCheDOS=ClostridiumintestinaleOX=36845GN=cheDPE=3SV=1	tr|A0A7D6VYS7|A0A7D6VYS7_9CLOTProbablechemoreceptorglutaminedeamidaseCheDOS=ClostridiumintestinaleOX=36845GN=cheDPE=3SV=1	tr|A0A7D6VYS7|A0A7D6VYS7_9CLOTProbablechemoreceptorglutaminedeamidaseCheDOS=ClostridiumintestinaleOX=36845GN=cheDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.7474670410156	2	471.748182	941.481811	0.32588	0.00015373	-0.89545	-0.00042243	-0.56956	-0.00026869	471.7476954095205	117.11	2.2576	115.75	115.46	117.71	-1.3645					72	42	3	0	0	0	0.64063	1	10947	10947		37.159	1.5408	1	454660			42618	35337	35215	35238	46086	46086					0.008728906551937143
PIIIQKSS	8	Unmodified	_PIIIQKSS_					0	0	0			REV__tr|A0A7D6ZV03|A0A7D6ZV03_9CLOTFe-onlynitrogenaseaccessoryproteinAnfOOS=ClostridiumintestinaleOX=36845GN=HZF06_13440PE=4SV=1	REV__tr|A0A7D6ZV03|A0A7D6ZV03_9CLOTFe-onlynitrogenaseaccessoryproteinAnfOOS=ClostridiumintestinaleOX=36845GN=HZF06_13440PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	443.2735595703125	2	443.273835	884.533118	-0.49808	-0.00022078	-3.1357	-0.00139	-3.6337	-0.0016107	443.27232582996317	144.05	0.88182	142.61	142.06	142.94	-1.4357					25	16	2	0	0	0	0.74754	1	14114	14114		27.882	4.8398	1	26550	+		42619	32233	35216	35239	46087	46087					0.08623259419891838
PIIIQLLSDR	10	Unmodified	_PIIIQLLSDR_					0	0	0		nc|ENSG00000140279|Q9NRD8|DUOX2;ENSG00000140279|ENST00000389039|DUOX2;ENST00000558383.1_1_15:45393877-45400429:-|nuORF;DUOX2|p.E724Rfs*26|1|0.09|ENSG00000140279|chr15:45105808-45105808|T/-|frameshift_variant	nc|ENSG00000140279|Q9NRD8|DUOX2	nc|ENSG00000140279|Q9NRD8|DUOX2	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3561401367188	2	584.358431	1166.70231	-2.312	-0.0013511	-1.149	-0.00067141	-3.461	-0.0020225	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.78463	1	14484	14484		20.947	1.8434	1	180810			42620	4829	35217	35240	46088	46088					0.12562535982578993
PIILKQWPPF	10	Unmodified	_PIILKQWPPF_					0	0	0			REV__nc|ENSG00000164808|Q14159-3|SPIDR	REV__nc|ENSG00000164808|Q14159-3|SPIDR	MULTI-MSMS	OvCa99_classI_Rep5	1	413.5848083496094	3	413.581382	1237.72232	1.1371	0.00047029	4.4129	0.0018251	5.55	0.0022954	413.5832174620275	63.491	2.1306	63.491	63.1	65.231	0					137	52	5	0	0	0	0.64063	1	5755	5755		41.427	9.7923	1	20518000	+		42621	28973	35218	35241	46089	46089					0.11296331713197105
PIILLIMKV	9	Unmodified	_PIILLIMKV_					0	0	0			REV__ENST00000446120.6_1_1:95323025-95330375:+|nuORF	REV__ENST00000446120.6_1_1:95323025-95330375:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.8198852539062	2	520.351031	1038.68751	3.3299	0.0017327	-0.89087	-0.00046357	2.439	0.0012691	520.3508691727752	133.05	0.39285	131.53	131.32	131.71	-1.5199					10	7	2	0	0	0	0.027462	1	12803	12803		26.796	13.837	1	20819	+		42622	25896	35219	35242	46090	46090					0.16971372580883326
PIIQIVTRE	9	Unmodified	_PIIQIVTRE_					0	0	0			REV__ENST00000444939.1_1_3:196050684-196051038:+|nuORF	REV__ENST00000444939.1_1_3:196050684-196051038:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.7666015625	2	534.824224	1067.63389	-0.38493	-0.00020587	0.28273	0.00015121	-0.1022	-5.4658E-05	534.8240675418201	49.212	0.47757	49.212	48.94	49.418	0					15	10	2	0	0	0	0.027462	1	3676	3676		37.159	0	1	686760	+		42623	25881	35220	35243	46091	46091					0.10278291402755713
PIKFQPKES	9	Unmodified	_PIKFQPKES_					0	0	0			REV__nc|ENSG00000168297|Q7Z7A4-5|PXK	REV__nc|ENSG00000168297|Q7Z7A4-5|PXK	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.8494262695312	2	537.303124	1072.5917	0.33969	0.00018252	-4.1127	-0.0022098	-3.773	-0.0020273	537.3009425016146	84.881	0.58271	82.235	81.978	82.561	-2.6463					29	11	3	0	0	0	0.027462	1	7145	7145		29.15	0	1	74565	+		42624	21360	35221	35244	46092	46092					0.058303159943761784
PIKIDLTHIG	10	Unmodified	_PIKIDLTHIG_					0	0	0			REV__ENST00000378533.3_1_X:38033574-38037570:-|nuORF	REV__ENST00000378533.3_1_X:38033574-38037570:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8294067382812	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.79917	1	14134	14134		19.104	1.7386	1	245610	+		42625	25142	35222	35245	46093	46093					0.10094577919790026
PIKIETLF	8	Unmodified	_PIKIETLF_					0	0	0		NLRP12|p.V730Gfs*41|1|0.13|ENSG00000142405|chr19:53807549-53807550|-/C|frameshift_variant;nc|ENSG00000142405|P59046-4|NLRP12;nc|ENSG00000142405|P59046-3|NLRP12;nc|ENSG00000142405|P59046-6|NLRP12;nc|ENSG00000142405|P59046-2|NLRP12;ENSG00000142405|ENST00000324134|NLRP12;nc|ENSG00000142405|P59046-7|NLRP12;NLRP12|p.E315Dfs*14|1|0.09|ENSG00000142405|chr19:53810714-53810715|-/AA|frameshift_variant	NLRP12|p.V730Gfs*41|1|0.13|ENSG00000142405|chr19:53807549-53807550|-/C|frameshift_variant	NLRP12|p.V730Gfs*41|1|0.13|ENSG00000142405|chr19:53807549-53807550|-/C|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2569274902344	2	480.791861	959.569169	2.3385	0.0011243	-3.6481	-0.001754	-1.3096	-0.00062963	480.7888960641208	84.059	0.29829	84.059	83.921	84.22	0					10	6	2	0	0	0	0.028476	1	8784	8784		24.203	0	1	142170			42626	4969	35223	35246	46094	46094					0.08776716596753431
PIKMKIPIAN	10	Unmodified	_PIKMKIPIAN_					0	0	0		nc|ENSG00000082258|O60583-2|CCNT2;ENSG00000082258|ENST00000264157|CCNT2	nc|ENSG00000082258|O60583-2|CCNT2	nc|ENSG00000082258|O60583-2|CCNT2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.7975463867188	2	562.846645	1123.67874	1.331	0.00074916	-3.4078	-0.0019181	-2.0768	-0.0011689	562.8450114580043	59.055	0.6044	55.663	55.3	55.904	-3.392					16	11	2	0	0	0	0.027021	1	3887	3887		21.96	0	1	21280			42627	1674	35224	35247	46095	46095					0.12184398944418717
PIKNIHLVN	9	Unmodified	_PIKNIHLVN_					0	0	0		tr|A0A553SNP2|A0A553SNP2_NIACISignalpeptidaseIOS=NialliacirculansOX=1397GN=lepBPE=3SV=1	tr|A0A553SNP2|A0A553SNP2_NIACISignalpeptidaseIOS=NialliacirculansOX=1397GN=lepBPE=3SV=1	tr|A0A553SNP2|A0A553SNP2_NIACISignalpeptidaseIOS=NialliacirculansOX=1397GN=lepBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2884521484375	2	524.319109	1046.62366	-0.88224	-0.00046257	0.59068	0.0003097	-0.29156	-0.00015287	524.3193471716792	39.398	0.43315	39.398	39.196	39.63	0					20	9	3	0	0	0	0.027462	1	2346	2346		17.365	5.8539	1	396460			42628	33942	35225	35248	46096	46096					0.10221728468172842
PIKQPITVR	9	Unmodified	_PIKQPITVR_					0	0	0		nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5;nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5;nc|ENSG00000100462|O14744-4|PRMT5	nc|ENSG00000100462|O14744-3|PRMT5	nc|ENSG00000100462|O14744-3|PRMT5	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.3318481445312	2	526.334759	1050.65496	-2.291	-0.0012058	-1.8819	-0.0009905	-4.1729	-0.0021963	526.3335579094949	147.21	1.1944	145.78	145.58	146.78	-1.4351					55	23	3	0	0	0	0.70177	1	14489	14489		17.365	0.89182	1	87130			42629	2072	35226	35249	46097	46097					0.13166301502246824
PIKQRRVYFRL	11	Unmodified	_PIKQRRVYFRL_					0	0	0		ENSG00000176092|ENST00000308182|CRYBG2	ENSG00000176092|ENST00000308182|CRYBG2	ENSG00000176092|ENST00000308182|CRYBG2	MULTI-MSMS	OvCa9_classI_Rep2	2	492.96929931640625	3	492.636772	1474.88849	-4.4123	-0.0021737	-0.46274	-0.00022796	-4.8751	-0.0024016	492.6364518280441	160.52	2.4825	160.29	159.35	161.83	-0.22697					136	50	4	0	0	0	0.72542	1	16331	16331		10.104	0.45776	1	91160			42630	7581	35227	35250	46098	46098					0.1700377794177257
PIKRNGVIL	9	Unmodified	_PIKRNGVIL_					0	0	0			REV__ENSG00000150361|ENST00000377844|KLHL1	REV__ENSG00000150361|ENST00000377844|KLHL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.2776794433594	2	505.329476	1008.6444	2.1948	0.0011091	-0.36036	-0.0001821	1.8344	0.00092699	505.3285810781138	86.895	0.45417	86.895	86.72	87.174	0					13	10	2	0	0	0	0.027462	1	9184	9184		18.324	0	1	306410	+		42631	20187	35228	35251	46099	46099					0.14042318847839397
PIKSKIAKE	9	Unmodified	_PIKSKIAKE_					0	0	0			REV__tr|A0A7D6VRW3|A0A7D6VRW3_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03215PE=4SV=1	REV__tr|A0A7D6VRW3|A0A7D6VRW3_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03215PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.81536865234375	2	507.321317	1012.62808	0.53325	0.00027053	-3.4237	-0.0017369	-2.8904	-0.0014664	507.319457072756	34.757	1.2525	31.968	31.698	32.95	-2.7881					50	24	3	0	0	0	0.027462	1	1102	1102		24.203	0	1	167550	+		42632	31451	35229	35252	46100	46100					0.12227192891089089
PILDLLSSH	9	Unmodified	_PILDLLSSH_					0	0	0			REV__ENSG00000144357|ENST00000272793|UBR3	REV__ENSG00000144357|ENST00000272793|UBR3	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.76312255859375	2	497.782025	993.549496	0.49757	0.00024768	3.4729	0.0017287	3.9705	0.0019764	497.784178022194	160.26	0.70134	160.26	159.96	160.66	0					19	13	2	0	0	0	0.027462	1	18790	18790		30.504	8.5438	1	12963	+		42633	19905	35230	35253	46101	46101					0.052463405860066814
PILEEQLSI	9	Unmodified	_PILEEQLSI_					0	0	0		tr|A0A553SUD2|A0A553SUD2_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_06755PE=4SV=1	tr|A0A553SUD2|A0A553SUD2_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_06755PE=4SV=1	tr|A0A553SUD2|A0A553SUD2_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_06755PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	521.296630859375	2	521.294965	1040.57538	1.4159	0.00073811	0.46236	0.00024103	1.8783	0.00097914	521.2951817501133	137.78	3.6292	137.78	135.69	139.32	0					166	76	5	0	0	0	0.28934	1	16083	16083		64.207	10.856	1	5949400			42634	34595	35231	35254	46102	46102					0.056711900376285485
PILFIRDAD	9	Unmodified	_PILFIRDAD_					0	0	0			REV__tr|A0A553SFV1|A0A553SFV1_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09525PE=4SV=1	REV__tr|A0A553SFV1|A0A553SFV1_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09525PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.3056640625	2	530.295299	1058.57605	-1.0775	-0.00057137	0.2306	0.00012229	-0.84686	-0.00044909	530.295687010247	105.16	1.1107	103.14	102.58	103.7	-2.0161					48	21	3	0	0	0	0.027462	1	9534	9534		23.042	0	1	108720	+		42635	29626	35232	35255	46103	46103					0.04910029477309763
PILGGMGKA	9	Unmodified	_PILGGMGKA_					0	0	0		tr|A0A553SJ06|A0A553SJ06_NIACIMMPLfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_15855PE=3SV=1	tr|A0A553SJ06|A0A553SJ06_NIACIMMPLfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_15855PE=3SV=1	tr|A0A553SJ06|A0A553SJ06_NIACIMMPLfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_15855PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	422.748779296875	2	422.241481	842.468409	-0.23196	-9.7942E-05	-3.2968	-0.0013921	-3.5288	-0.00149	422.2397573900135	78.229	1.5244	75.412	75.067	76.592	-2.8165					60	31	3	0	0	0	0.027462	1	6436	6436		12.207	0	1	266560			42636	33450	35233	35256	46104	46104					0.04087361342249096
PILIKSNGR	9	Unmodified	_PILIKSNGR_					0	0	0			REV__tr|A0A7D6VRM4|A0A7D6VRM4_9CLOTDUF3189familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12750PE=4SV=1	REV__tr|A0A7D6VRM4|A0A7D6VRM4_9CLOTDUF3189familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12750PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.77630615234375	2	499.311284	996.608014	-0.49481	-0.00024706	0.37857	0.00018902	-0.11624	-5.8041E-05	499.3110620459879	66.934	1.0411	64.273	64	65.041	-2.661					36	20	2	0	0	0	0.027462	1	5178	5178		5.9211	0	1	58736	+		42637	31429	35234	35257	46105	46105					0.10957441951131841
PILKPENTL	9	Unmodified	_PILKPENTL_					0	0	0			REV__tr|A0A7D6ZIZ6|A0A7D6ZIZ6_9CLOTGlutamine-dependentNAD(+)synthetaseOS=ClostridiumintestinaleOX=36845GN=nadEPE=3SV=1	REV__tr|A0A7D6ZIZ6|A0A7D6ZIZ6_9CLOTGlutamine-dependentNAD(+)synthetaseOS=ClostridiumintestinaleOX=36845GN=nadEPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.8048095703125	2	512.8055	1023.59645	3.2957	0.0016901	-3.2916	-0.0016879	0.0041479	2.1271E-06	512.8036235885786	131.04	1.1454	129.57	129.26	130.4	-1.4779					53	23	3	0	0	0	0.27001	1	12586	12586		66.429	13.078	1	241460	+		42638	32073	35235	35258	46106	46106					0.08559200137142398
PILKWIGYRKE	11	Unmodified	_PILKWIGYRKE_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MSMS	OvCa99_classI_Rep5	1	468.27923583984375	3	468.278362	1401.81326	NaN	NaN	NaN	NaN	NaN	NaN	NaN	157.25	1	157.25	156.75	157.75	0								0	0	0	0.19403	1	18429	18429		34.087	16.92	1		+		42639	28942;32737	35236	35259	46107	46107					0.12842175690684599
PILLRFPPL	9	Unmodified	_PILLRFPPL_					0	0	0		ENST00000369577.7_1_6:87968745-87968796:+|nuORF	ENST00000369577.7_1_6:87968745-87968796:+|nuORF	ENST00000369577.7_1_6:87968745-87968796:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	533.3400268554688	2	533.344595	1064.67464	-5.4486	-0.002906	-2.4392	-0.0013009	-7.8878	-0.0042069	533.3431726379797	156.49	1.098	155.32	155.02	156.12	-1.1707					66	21	4	0	0	0	0.6959	1	13493	13493		19.36	0	1	385900			42640	10899	35237	35260	46108	46108					0.14488677513008952
PILLRFPPL	9	Unmodified	_PILLRFPPL_					0	0	0		ENST00000369577.7_1_6:87968745-87968796:+|nuORF	ENST00000369577.7_1_6:87968745-87968796:+|nuORF	ENST00000369577.7_1_6:87968745-87968796:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.34033203125	2	533.344595	1064.67464	-6.1907	-0.0033018	-1.8486	-0.00098596	-8.0394	-0.0042878	533.3435201452669	156.94	1.5192	155.39	155.04	156.56	-1.545					135	41	5	0	0	0	0.64339	1	15557	15557		26.796	4.8362	1	1621700			42641	10899	35237	35260	46109	46109					0.14488677513008952
PILPKDKKEV	10	Unmodified	_PILPKDKKEV_					0	0	0		ENSG00000111885|ENST00000368468|MAN1A1	ENSG00000111885|ENST00000368468|MAN1A1	ENSG00000111885|ENST00000368468|MAN1A1	MULTI-SECPEP	OvCa9_classI_Rep3	3	583.8164672851562	2	583.860806	1165.70706	-1.8991	-0.0011088	3.0377	0.0017736	1.1386	0.00066477	583.8609533063918	81.787	0.14847	79.465	79.359	79.507	-2.3226					4	2	2	0	0	0	0.026915	1	4566	4566		35.618	2.8059	1	6468.9			42642	2862	35238	35261	46110	46110					0.1308342012534922
PILRYVSGDD	10	Unmodified	_PILRYVSGDD_					0	0	0		nc|ENSG00000163645|Q7L0X2-3|ERICH6;nc|ENSG00000163645|Q7L0X2-2|ERICH6;ENSG00000163645|ENST00000295910|ERICH6	nc|ENSG00000163645|Q7L0X2-3|ERICH6	nc|ENSG00000163645|Q7L0X2-3|ERICH6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	566.8106689453125	2	567.793121	1133.57169	-0.3595	-0.00020412	-2.1933	-0.0012454	-2.5528	-0.0014495	567.79132892196	55.174	1.2217	51.927	51.695	52.917	-3.2474					44	23	3	0	0	0	0.026802	1	3470	3470		51.335	14.176	1	262650			42643	6340	35239	35262	46111	46111					0.010245202637634065
PILWLILPD	9	Unmodified	_PILWLILPD_					0	0	0			REV__L1MA1_dup882|chr3:174894625-174897831:+|1.387705056550523|0.3345806313734131|2.05|429.0|156|2|anti-sense	REV__L1MA1_dup882|chr3:174894625-174897831:+|1.387705056550523|0.3345806313734131|2.05|429.0|156|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.33203125	2	540.328611	1078.64267	0.34656	0.00018726	2.5593	0.0013829	2.9059	0.0015701	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.64339	1	13596	13596		26.796	5.8492	1	342200	+		42644	28376	35240	35263	46112	46112					0.1064926503922834
PILYINPRTL	10	Unmodified	_PILYINPRTL_					0	0	0			REV__ENST00000254480.9_1_3:47777569-47779528:-|nuORF	REV__ENST00000254480.9_1_3:47777569-47779528:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	400.57598876953125	3	400.576408	1198.70739	1.3196	0.00052861	-1.2069	-0.00048346	0.11273	4.5157E-05	400.57584360186854	59.158	1.6195	56.378	56.137	57.756	-2.7801					103	30	5	0	0	0	0.53807	1	4327	4327		49.536	5.8853	1	716960	+		42645	21775	35241	35264	46113	46113					0.1159883984521457
PIMINRVEP	9	Unmodified	_PIMINRVEP_					0	0	0			REV__DOCK3|p.K1465Pfs*18|1|0.29|ENSG00000088538|chr3:51356230-51356231|-/TCCCCTCACCTTTCACACACAGCTTCCTTGGGGACCA|frameshift_variant	REV__DOCK3|p.K1465Pfs*18|1|0.29|ENSG00000088538|chr3:51356230-51356231|-/TCCCCTCACCTTTCACACACAGCTTCCTTGGGGACCA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	535.7635498046875	2	534.797152	1067.57975	0.44639	0.00023873	-4.2106	-0.0022518	-3.7642	-0.0020131	534.796309596772	78.491	0.25304	76.138	75.998	76.251	-2.3527					6	4	2	0	0	0	0.027185	1	4182	4182		82.241	0	1	6998.4	+		42646	16329	35242	35265	46114	46114					0.04866375979554505
PIMPEPKVE	9	Unmodified	_PIMPEPKVE_					0	0	0		tr|A0A7D6VQ68|A0A7D6VQ68_9CLOTViralA-typeinclusionproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01500PE=4SV=1	tr|A0A7D6VQ68|A0A7D6VQ68_9CLOTViralA-typeinclusionproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01500PE=4SV=1	tr|A0A7D6VQ68|A0A7D6VQ68_9CLOTViralA-typeinclusionproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01500PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.3014526367188	2	520.27826	1038.54197	1.219	0.0006342	0.95783	0.00049834	2.1768	0.0011325	520.2786622373687	127.68	0.68799	127.68	127.45	128.14	0					17	14	2	0	0	0	0.02741	1	14814	14814		82.305	2.854	1	68425			42647	34824	35243	35266	46115	46115					0.024238649940798496
PINAKKTSTA	10	Unmodified	_PINAKKTSTA_					0	0	0		ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	ENSG00000073910|ENST00000542859|FRY	MULTI-SECPEP	OvCa9_classI_Rep2	2	516.2847900390625	2	515.798206	1029.58186	0.56969	0.00029385	-1.2018	-0.0006199	-0.63214	-0.00032606	515.7976398015558	82.426	1.0688	80.828	80.436	81.505	-1.5988					30	20	2	0	0	0	0.026931	1	7021	7021		17.468	0	1	108500			42648	1503	35244	35267	46116	46116					0.06825127989009161
PINIKAKTK	9	Unmodified	_PINIKAKTK_					0	0	0			REV__nc|ENSG00000183091|P20929-4|NEB	REV__nc|ENSG00000183091|P20929-4|NEB	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.2593078613281	2	506.829309	1011.64407	-0.37605	-0.00019059	-0.22924	-0.00011618	-0.60529	-0.00030678	506.8292450021938	79.267	1.6067	76.927	76.61	78.217	-2.3399					61	31	3	0	0	0	0.027462	1	4397	4397		29.15	8.2026	1	118850	+		42649	22341	35245	35268	46117	46117					0.1387089912797137
PINKIKELKE	10	Unmodified	_PINKIKELKE_					0	0	0		tr|A0A7D6VPJ3|A0A7D6VPJ3_9CLOTMannonatedehydrataseOS=ClostridiumintestinaleOX=36845GN=uxuAPE=3SV=1	tr|A0A7D6VPJ3|A0A7D6VPJ3_9CLOTMannonatedehydrataseOS=ClostridiumintestinaleOX=36845GN=uxuAPE=3SV=1	tr|A0A7D6VPJ3|A0A7D6VPJ3_9CLOTMannonatedehydrataseOS=ClostridiumintestinaleOX=36845GN=uxuAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.36962890625	2	606.371538	1210.72852	-1.3399	-0.00081245	-1.8512	-0.0011225	-3.191	-0.001935	606.3703052098949	148.27	2.4393	146.84	145.43	147.87	-1.4351					149	49	5	0	0	0	0.80581	1	14673	14673		18.262	0	1	591330			42650	34774	35246	35269	46118	46118					0.13158805154057518
PINMQGSCKI	10	Unmodified	_PINMQGSCKI_					0	0	0			REV__tr|A0A553SJT0|A0A553SJT0_NIACIAminopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_17565PE=3SV=1	REV__tr|A0A553SJT0|A0A553SJT0_NIACIAminopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_17565PE=3SV=1	MSMS	OvCa99_classI_Rep5	1	545.7666625976562	2	545.772819	1089.53109	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.76	1	26.76	26.26	27.26	0								0	0	0	0.13927	1	728	728		24.519	0.31644	1		+		42651	30041	35247	35270	46119	46119					-0.010098606518567976
PINYMWLF	8	Unmodified	_PINYMWLF_					0	0	0			REV__ENST00000321027.7_3_2:75929435-75937941:-|nuORF	REV__ENST00000321027.7_3_2:75929435-75937941:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.3099975585938	2	542.270238	1082.52592	-1.0534	-0.0005712	-1.0305	-0.00055882	-2.0839	-0.00113	542.2694589104354	65.875	0.23788	65.875	65.707	65.945	0					8	5	2	0	0	0	0.028476	1	6064	6064		21.702	4.3374	1	409540	+		42652	24445	35248	35271	46120	46120					-0.012037964521823596
PIPKAQPRGR	10	Unmodified	_PIPKAQPRGR_					0	0	0			REV__ENSG00000131037|ENST00000201647|EPS8L1	REV__ENSG00000131037|ENST00000201647|EPS8L1	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.33984375	2	560.340907	1118.66726	-5.405	-0.0030286	4.1979	0.0023523	-1.2071	-0.00067639	560.3432112723539	161.88	2.7705	160.26	159.52	162.29	-1.6239					146	74	5	0	0	0	0.7759	1	15980	15980		21.96	0	1	403070	+		42653	18993	35249	35272	46121	46121					0.11267337965318802
PIPKSLTSKY	10	Unmodified	_PIPKSLTSKY_					0	0	0			REV__ENSG00000181555|ENST00000409792|SETD2;REV__SETD2|p.E983Kfs*23|1|0.1|ENSG00000181555|chr3:47121689-47121689|C/-|frameshift_variant	REV__SETD2|p.E983Kfs*23|1|0.1|ENSG00000181555|chr3:47121689-47121689|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3297119140625	2	567.331882	1132.64921	-3.474	-0.0019709	-0.21845	-0.00012393	-3.6925	-0.0020949	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.73378	1	12143	12143		26.693	3.6504	1	458690	+		42654	22239;29354	35250	35273	46122	46122					0.0881915819995811
PIPTFSTAT	9	Unmodified	_PIPTFSTAT_					0	0	0			REV__ENSG00000117983|ENST00000529681|MUC5B	REV__ENSG00000117983|ENST00000529681|MUC5B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.7750549316406	2	467.74765	933.480748	-0.87205	-0.0004079	0.89418	0.00041825	0.022135	1.0354E-05	467.7481607237063	65.999	0.43534	62.514	62.325	62.761	-3.4854					10	8	2	0	0	0	0.027456	1	4798	4798		30.504	13.799	1	28661	+		42655	18375	35251	35274	46123	46123					0.011346762862785909
PIPVLAPLIQK	11	Unmodified	_PIPVLAPLIQK_					0	0	0			REV__ENST00000539764.1_3_11:73689441-73691800:-|nuORF	REV__ENST00000539764.1_3_11:73689441-73691800:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	594.8524780273438	2	594.889367	1187.76418	-1.0074	-0.00059931	-0.63854	-0.00037986	-1.646	-0.00097917	594.8887564661635	77.023	0.41749	75.234	75.051	75.468	-1.7894					11	7	2	0	0	0	0.02601	1	6387	6387		29.15	17.639	1	16204	+		42656	27339	35252	35275	46124	46124					0.17780887401750078
PIQGLPLAIAN	11	Unmodified	_PIQGLPLAIAN_					0	0	0		nc|ENSG00000185591|P08047-3|SP1;nc|ENSG00000185591|P08047-2|SP1;ENSG00000185591|ENST00000327443|SP1	nc|ENSG00000185591|P08047-3|SP1	nc|ENSG00000185591|P08047-3|SP1	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8298950195312	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.71498	1	11694	11694		24.519	0.31644	1	308210			42657	8264	35253	35276	46125	46125					0.10094577919790026
PIQISRRII	9	Unmodified	_PIQISRRII_					0	0	0			REV__ENSG00000165197|ENST00000297904|VEGFD	REV__ENSG00000165197|ENST00000297904|VEGFD	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.3532104492188	2	548.353483	1094.69241	-0.61712	-0.0003384	0.79971	0.00043852	0.18259	0.00010013	548.3537278513091	82.828	1.3158	80.145	79.782	81.098	-2.683					60	26	3	0	0	0	0.64427	1	6874	6874		26.693	0	1	233300	+		42658	21067	35254	35277	46126	46126					0.14885392767905614
PIQKIPLGLDL	11	Unmodified	_PIQKIPLGLDL_					0	0	0		nc|ENSG00000064607|Q8IX01-4|SUGP2;nc|ENSG00000064607|Q8IX01-3|SUGP2;ENSG00000064607|ENST00000452918|SUGP2	nc|ENSG00000064607|Q8IX01-4|SUGP2	nc|ENSG00000064607|Q8IX01-4|SUGP2	MULTI-MSMS	OvCa9_classI_Rep3	3	402.91925048828125	3	402.920063	1205.73836	1.4006	0.00056434	-3.543	-0.0014275	-2.1424	-0.00086321	402.91856565389173	70.933	2.693	68.214	67.801	70.494	-2.7196					144	53	4	0	0	0	0.70315	1	3279	3279		28.577	4.3449	1	338740			42659	1301	35255	35278	46127	46127					0.14371993159466
PIQKQKSAIL	10	Unmodified	_PIQKQKSAIL_					0	0	0			REV__nc|ENSG00000173421|Q8IYA8-2|IHO1	REV__nc|ENSG00000173421|Q8IYA8-2|IHO1	MULTI-MSMS	OvCa9_classI_Rep2	2	563.3526611328125	2	563.353148	1124.69174	-0.51442	-0.0002898	-0.73977	-0.00041675	-1.2542	-0.00070655	563.3531834496299	116.13	2.03	116.01	115.64	117.67	-0.11777					126	40	5	0	0	0	0.28845	1	11085	11085		82.241	10.363	1	2302900	+		42660	21771	35256	35279	46128	46128					0.13438553328182934
PIQTRQWFQI	10	Unmodified	_PIQTRQWFQI_					0	0	0		HERVH-int_dup2924|chr7:120779458-120782483:-|3.6914275035513295|0.0201601709888603|7.52|415.0|12|1|sense	HERVH-int_dup2924|chr7:120779458-120782483:-|3.6914275035513295|0.0201601709888603|7.52|415.0|12|1|sense	HERVH-int_dup2924|chr7:120779458-120782483:-|3.6914275035513295|0.0201601709888603|7.52|415.0|12|1|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	439.5748596191406	3	439.575178	1315.70371	0.18924	8.3186E-05	-3.2598	-0.0014329	-3.0705	-0.0013497	439.57367865103447	64.375	1.9917	60.9	60.539	62.531	-3.475					112	40	5	0	0	0	0.67987	1	4589	4589		32.751	1.1163	1	797130			42661	14414	35257	35280	46129	46129					0.058481700713628015
PIRELRFFCF	10	Unmodified	_PIRELRFFCF_					0	0	0		ENST00000534479.5_1_11:12023699-12030797:-|nuORF	ENST00000534479.5_1_11:12023699-12030797:-|nuORF	ENST00000534479.5_1_11:12023699-12030797:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	442.27203369140625	3	443.237509	1326.6907	0.40671	0.00018027	-0.066755	-2.9588E-05	0.33995	0.00015068	443.23788086723226	25.2	0.4021	25.2	24.99	25.392	0					16	7	3	0	0	0	0.027372	1	542	542		10.104	0	1	30350			42662	13357	35258	35281	46130	46130					0.04042015687628009
PIRHSFRP	8	Unmodified	_PIRHSFRP_					0	0	0			REV__ENSG00000166828|ENST00000300061|SCNN1G	REV__ENSG00000166828|ENST00000300061|SCNN1G	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.2589111328125	2	505.288143	1008.56173	-0.10659	-5.3858E-05	-1.5606	-0.00078858	-1.6672	-0.00084243	505.28687471082463	79.57	1.3161	77.875	77.452	78.769	-1.6951					45	25	3	0	0	0	0.028476	1	6736	6736		38.806	8.3025	1	78934	+		42663	21224	35259	35282	46131	46131					0.0577942183971345
PIRILLVKS	9	Unmodified	_PIRILLVKS_					0	0	0			REV__ENST00000589716.5_1_17:40907159-40911837:-|nuORF	REV__ENST00000589716.5_1_17:40907159-40911837:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.8218994140625	2	519.855327	1037.6961	1.5226	0.00079154	4.2752	0.0022225	5.7978	0.003014	519.8580108606579	133.84	0.33488	133.84	133.67	134.01	0					8	6	2	0	0	0	0.027462	1	15590	15590		10.866	3.1753	1	29289	+		42664	27909	35260	35283	46132	46132					0.1787606254174534
PIRISRLLA	9	Unmodified	_PIRISRLLA_					0	0	0		ENST00000606521.1_1_6:85454030-85457675:-|nuORF	ENST00000606521.1_1_6:85454030-85457675:-|nuORF	ENST00000606521.1_1_6:85454030-85457675:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.8206176757812	2	519.842751	1037.67095	0.85079	0.00044228	-2.9089	-0.0015122	-2.0581	-0.0010699	519.8408561026072	131.75	0.48546	131.52	131.3	131.78	-0.22696					17	9	3	0	0	0	0.027462	1	12994	12994		30.504	14.03	1	41483			42665	14277	35261	35284	46133	46133					0.1536200773919063
PIRKISSK	8	Unmodified	_PIRKISSK_					0	0	0		ENSG00000087116|ENST00000251582|ADAMTS2	ENSG00000087116|ENST00000251582|ADAMTS2	ENSG00000087116|ENST00000251582|ADAMTS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.5909118652344	2	464.800552	927.58655	0.23594	0.00010967	-0.185	-8.5987E-05	0.050944	2.3679E-05	464.8002996472484	57.546	0.54571	57.546	57.353	57.899	0					24	12	3	0	0	0	0.028476	1	4825	4825		30.504	7.4612	1	637030			42666	1764	35262	35285	46134	46134					0.1198605692242154
PIRLEIPIL	9	Unmodified	_PIRLEIPIL_					0	0	0			REV__ENST00000452400.6_1_8:71024612-71024843:-|nuORF	REV__ENST00000452400.6_1_8:71024612-71024843:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.3447265625	2	532.347335	1062.68012	0.65024	0.00034615	-0.6405	-0.00034097	0.0097436	5.187E-06	532.3468678674839	138.42	1.5747	136.89	136.6	138.17	-1.5284					45	32	2	0	0	0	0.56889	1	13470	13470		35.618	5.1146	1	47987	+		42667	25981	35263	35286	46135	46135					0.15128356304853696
PIRLITTII	9	Unmodified	_PIRLITTII_					0	0	0			REV__ENSG00000278889|ENST00000341959|OR2S2	REV__ENSG00000278889|ENST00000341959|OR2S2	MULTI-MSMS	OvCa9_classI_Rep3	3	520.3466796875	2	520.347335	1038.68012	0.45282	0.00023562	-0.76983	-0.00040058	-0.31702	-0.00016496	520.346854726536	130.58	2.2687	129.46	129.13	131.39	-1.1166					144	45	5	0	0	0	0.091859	2	10372	10360;10372		99.375	0.74558	1	1601100	+		42668	23648	35264	35287	46136;46137	46137					0.16232356304840323
PIRLLSSFV	9	Unmodified	_PIRLLSSFV_					0	0	0		nc|ENSG00000059122|Q4VC44-5|FLYWCH1;ENST00000570752.5_1_16:2986460-2998725:+|nuORF;ENST00000574985.1_1_16:2986529-2998725:+|nuORF	nc|ENSG00000059122|Q4VC44-5|FLYWCH1	nc|ENSG00000059122|Q4VC44-5|FLYWCH1	MULTI-MSMS	OvCa9_classI_Rep3	3	516.3119506835938	2	516.316035	1030.61752	-5.397	-0.0027865	1.4148	0.00073048	-3.9822	-0.0020561	516.3166994253895	156.49	2.0589	155.32	154.75	156.81	-1.1707					101	49	4	0	0	0	0.68424	2	13446	13446;13530		21.96	1.4781	1	710990			42669	13899	35265	35288	46138;46139	46138					0.10343210236646883
PIRLLSSFV	9	Unmodified	_PIRLLSSFV_					0	0	0		nc|ENSG00000059122|Q4VC44-5|FLYWCH1;ENST00000570752.5_1_16:2986460-2998725:+|nuORF;ENST00000574985.1_1_16:2986529-2998725:+|nuORF	nc|ENSG00000059122|Q4VC44-5|FLYWCH1	nc|ENSG00000059122|Q4VC44-5|FLYWCH1	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.313232421875	2	516.316035	1030.61752	-5.454	-0.002816	1.4276	0.00073712	-4.0264	-0.0020789	516.3166829666766	156.94	1.6079	155.39	155.01	156.62	-1.545					108	44	5	0	0	0	0.67509	1	15543	15543		23.042	1.0826	1	509660			42670	13899	35265	35288	46140	46140					0.10343210236646883
PIRQPKKA	8	Unmodified	_PIRQPKKA_					0	0	0			REV__nc|ENSG00000005810|O75592-2|MYCBP2	REV__nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	469.7517395019531	2	469.300719	936.586885	0.71854	0.00033721	-0.55303	-0.00025954	0.16551	7.7673E-05	469.30018857395066	68.652	0.93538	65.162	64.818	65.753	-3.4902					28	18	3	0	0	0	0.028476	1	5126	5126		18.324	1.6194	1	71739	+		42671	16403	35266	35289	46141	46141					0.11605476642262147
PIRRVIMDDK	10	Unmodified	_PIRRVIMDDK_					0	0	0			REV__nc|ENSG00000136153|Q8WWI1-4|LMO7	REV__nc|ENSG00000136153|Q8WWI1-4|LMO7	MULTI-MSMS	OvCa9_classI_Rep3	3	621.8513793945312	2	621.85299	1241.69143	1.1955	0.00074343	-4.3276	-0.0026911	-3.1321	-0.0019477	621.8502830657769	71.677	2.3262	69.075	68.633	70.959	-2.6023					129	46	4	0	0	0	0.64697	1	3357	3357		36.447	2.2742	1	908440	+		42672	28872	35267	35290	46142	46142					0.08024810336655719
PIRTLAVKKRS	11	Unmodified	_PIRTLAVKKRS_					0	0	0			REV__ENST00000437071.5_1_22:27068919-27134146:+|nuORF	REV__ENST00000437071.5_1_22:27068919-27134146:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	634.3779907226562	2	634.911696	1267.80884	-5.7702	-0.0036636	0.9127	0.00057948	-4.8575	-0.0030841	634.9122464455666	163.49	0.75818	163.27	162.88	163.64	-0.22696					40	24	2	0	0	0	0.026007	1	16683	16683		18.262	1.7889	1	44365	+		42673	25789	35268	35291	46143	46143					0.18564711267777056
PIRTLAVKKRS	11	Unmodified	_PIRTLAVKKRS_					0	0	0			REV__ENST00000437071.5_1_22:27068919-27134146:+|nuORF	REV__ENST00000437071.5_1_22:27068919-27134146:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	634.911696	1267.80884	-6.2612	-0.0039753	0.79102	0.00050223	-5.4702	-0.0034731	634.9120369688787	164.78	0.1761	163.14	163.01	163.18	-1.6405	-0.062349	-0.00012696	NaN	18.262	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13417	+		42674	25789	35268	35291							0.18564711267777056
PIRVTVKTPKD	11	Unmodified	_PIRVTVKTPKD_					0	0	0		ENSG00000160803|ENST00000368309|UBQLN4;nc|ENSG00000160803|Q9NRR5-2|UBQLN4	ENSG00000160803|ENST00000368309|UBQLN4	ENSG00000160803|ENST00000368309|UBQLN4	MULTI-MSMS	OvCa99_classI_Rep5	1	627.3841552734375	2	627.382437	1252.75032	0.45246	0.00028386	-0.20501	-0.00012862	0.24745	0.00015525	627.381941059398	164.3	2.2705	164.3	163.48	165.75	0					225	84	3	0	0	0	0.70142	1	19240	19240		29.17	4.6509	1	178050			42675	6095	35269	35292	46144	46144					0.13405609902633842
PIRYLAASF	9	Unmodified	_PIRYLAASF_					0	0	0			REV__ENSG00000137819|ENST00000395407|PAQR5	REV__ENSG00000137819|ENST00000395407|PAQR5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.3060913085938	2	519.292559	1036.57057	0.60075	0.00031196	-1.5443	-0.00080197	-0.9436	-0.00049	519.7924890438103	35.993	0.59974	33.144	32.839	33.439	-2.849					15	11	2	0	0	0	0.027462	1	1210	1210		33.516	3.674	1	17352	+		42676	19482	35270	35293	46145	46145					0.0537435068549712
PISEIKNAVKL	11	Unmodified	_PISEIKNAVKL_					0	0	0			REV__nc|ENSG00000163564|Q6K0P9-3|PYHIN1	REV__nc|ENSG00000163564|Q6K0P9-3|PYHIN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.369873046875	2	606.371538	1210.72852	-1.3399	-0.00081245	-1.8512	-0.0011225	-3.191	-0.001935	606.3703052098949	148.27	2.4393	146.84	145.43	147.87	-1.4351					149	49	5	0	0	0	0.72064	1	14661	14661		22.58	2.5829	1	591330	+		42677	20854	35271	35294	46146	46146					0.13158805154080255
PISFLIMKTVV	11	Unmodified	_PISFLIMKTVV_					0	0	0			REV__ENST00000592262.1_1_19:33604586-33621063:+|nuORF	REV__ENST00000592262.1_1_19:33604586-33621063:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	624.3759765625	2	624.375235	1246.73592	-6.4688	-0.004039	0.15762	9.8414E-05	-6.3112	-0.0039405	624.3749313698447	163.73	0.6391	162.09	161.79	162.43	-1.6336					37	17	3	0	0	0	0.68391	1	16172	16172		25.574	0	1	75169	+		42678	27949	35272	35295	46147	46147					0.12241821430120581
PISGGVVYLD	10	Unmodified	_PISGGVVYLD_					0	0	0			REV__nc|ENSG00000123444|Q9NVX7-1|KBTBD4	REV__nc|ENSG00000123444|Q9NVX7-1|KBTBD4	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.31475830078125	2	510.274032	1018.53351	-0.25553	-0.00013039	3.9166	0.0019985	3.661	0.0018681	510.7768237210721	40.711	0.17556	40.711	40.619	40.795	0					5	3	2	0	0	0	0.026956	1	2490	2490		34.173	0.67956	1	16703	+		42679	18640	35273	35296	46148	46148					0.02498634349092299
PISIPVVIKSV	11	Unmodified	_PISIPVVIKSV_					0	0	0		tr|A0A7D6ZHT6|A0A7D6ZHT6_9CLOTAECfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_00910PE=3SV=1	tr|A0A7D6ZHT6|A0A7D6ZHT6_9CLOTAECfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_00910PE=3SV=1	tr|A0A7D6ZHT6|A0A7D6ZHT6_9CLOTAECfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_00910PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	576.3736572265625	2	576.373549	1150.73255	-1.3836	-0.0007975	-1.0189	-0.0005873	-2.4026	-0.0013848	576.3728504053934	53.79	1.3298	50.542	50.263	51.593	-3.2474					68	25	4	0	0	0	0.69424	1	3304	3304		31.634	11.637	1	262630			42680	35588	35274	35297	46149	46149					0.1632089464778801
PISNIEPTSPA	11	Unmodified	_PISNIEPTSPA_					0	0	0		nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000196531|ENST00000454682|NACA	nc|ENSG00000196531|E9PAV3-2|NACA	nc|ENSG00000196531|E9PAV3-2|NACA	MULTI-MSMS	OvCa99_classI_Rep5	1	563.2949829101562	2	563.292953	1124.57135	1.464	0.00082464	1.1886	0.00066955	2.6526	0.0014942	563.293537841004	142.36	2.6625	142.36	141.93	144.6	0					88	53	2	0	0	0	0.43993	1	16665	16665		58.23	14.113	1	1021600			42681	8621	35275	35298	46150	46150					0.014051005439114306
PISWDSLTLL	10	Unmodified	_PISWDSLTLL_					0	0	0			REV__ENST00000531236.1_1_11:71192901-71193895:+|nuORF	REV__ENST00000531236.1_1_11:71192901-71193895:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.8346557617188	2	572.816064	1143.61758	2.3459	0.0013438	-1.6759	-0.00096001	0.66998	0.00038377	572.8151055104553	121.22	0.74285	121.22	121.01	121.75	0					12	7	2	0	0	0	0.026639	1	13958	13958		44.117	19.914	1	87246	+		42682	27214	35276	35299	46151	46151					0.0515116544600005
PISYRPVTL	9	Unmodified	_PISYRPVTL_					0	0	0			REV__ENSG00000130338|ENST00000367097|TULP4	REV__ENSG00000130338|ENST00000367097|TULP4	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3056030273438	2	523.305667	1044.59678	0.3552	0.00018588	-1.1012	-0.00057627	-0.74601	-0.00039039	523.3049818602126	107.67	1.863	107.37	107.07	108.93	-0.30836					109	37	6	0	0	0	0.16562	3	10060	10051;10060;10072		82.241	13.454	1	586410	+		42683	18941	35277	35300	46152;46153;46154	46153					0.0762661985700106
PISYRPVTL	9	Unmodified	_PISYRPVTL_					0	0	0			REV__ENSG00000130338|ENST00000367097|TULP4	REV__ENSG00000130338|ENST00000367097|TULP4	MULTI-MSMS	OvCa9_classI_Rep3	3	523.30615234375	2	523.305667	1044.59678	-0.23759	-0.00012433	-0.31404	-0.00016434	-0.55163	-0.00028867	523.3053728834569	108.59	1.7075	107.39	107.11	108.82	-1.1978					93	32	5	0	0	0	0.14998	4	7757	7757;7763;7769;7783		84.916	5.4645	1	782850	+		42684	18941	35277	35300	46155;46156;46157;46158	46155					0.0762661985700106
PISYRPVTL	9	Unmodified	_PISYRPVTL_					0	0	0			REV__ENSG00000130338|ENST00000367097|TULP4	REV__ENSG00000130338|ENST00000367097|TULP4	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.3062133789062	2	523.305667	1044.59678	-0.97551	-0.00051049	0.61481	0.00032173	-0.3607	-0.00018876	523.3058336734236	109.12	1.9233	107.4	107.13	109.05	-1.7256					82	36	4	0	0	0	0.10363	2	10000	10000;10048		96.19	8.7031	1	878890	+		42685	18941	35277	35300	46159;46160	46159					0.0762661985700106
PISYYDLPF	9	Unmodified	_PISYYDLPF_					0	0	0			REV__nc|ENSG00000143569|Q14157-4|UBAP2L	REV__nc|ENSG00000143569|Q14157-4|UBAP2L	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.3655395507812	2	557.776408	1113.53826	3.9887	0.0022248	-0.64807	-0.00036148	3.3406	0.0018633	557.7754643196607	88.173	0.5486	88.173	88.003	88.551	0					21	12	3	0	0	0	0.027462	1	9398	9398		25.45	1.2474	1	688800	+		42686	19853	35278	35301	46161	46161					-0.013964815081635606
PITDRAPLIK	10	Unmodified	_PITDRAPLIK_					0	0	0			REV__L1PB4_dup1466|chr4:19614553-19617282:+|1.566952962030771|0.0066926762288261|7.87|427.0|28|1|sense	REV__L1PB4_dup1466|chr4:19614553-19617282:+|1.566952962030771|0.0066926762288261|7.87|427.0|28|1|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	562.3427124023438	2	562.345323	1122.67609	-1.142	-0.00064221	-2.621	-0.0014739	-3.7631	-0.0021161	562.3438081477608	141.84	4.7959	141.62	140.24	145.03	-0.22697					133	96	2	0	0	0	0.69073	1	14207	14207		31.53	1.0262	1	113870	+		42687	28605	35279	35302	46162	46162					0.11966266811100468
PITESISVK	9	Unmodified	_PITESISVK_					0	0	0			REV__tr|A0A7D6VUB8|A0A7D6VUB8_9CLOTATP-dependentDNAhelicaseRecGC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01415PE=4SV=1	REV__tr|A0A7D6VUB8|A0A7D6VUB8_9CLOTATP-dependentDNAhelicaseRecGC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01415PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.3104248046875	2	487.281857	972.549162	-0.88657	-0.00043201	0.89003	0.0004337	0.0034631	1.6875E-06	487.2821557395697	106.56	1.5039	104.59	104.04	105.54	-1.9763					65	28	3	0	0	0	0.027462	1	9641	9641		27.882	0	1	57310	+		42688	31667	35280	35303	46163	46163					0.06178920866148019
PITGGNLVVAM	11	Unmodified	_PITGGNLVVAM_					0	0	0			REV__ENST00000562348.1_1_16:19871824-19873392:-|nuORF	REV__ENST00000562348.1_1_16:19871824-19873392:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.3289794921875	2	536.296985	1070.57942	-0.55526	-0.00029778	-3.1848	-0.001708	-3.74	-0.0020058	536.2957283594045	60.521	0.59244	57.091	56.601	57.194	-3.43					24	11	3	0	0	0	0.025265	1	4065	4065		42.864	13.715	1	57981	+		42689	21259	35281	35304	46164	46164					0.046949562596637406
PITGYLSV	8	Unmodified	_PITGYLSV_					0	0	0		HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|29|2|sense	HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|29|2|sense	HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|29|2|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	425.2384948730469	2	425.239461	848.46437	0.29568	0.00012573	-3.4171	-0.0014531	-3.1214	-0.0013274	425.2378895098476	31.732	0.84355	31.732	31.509	32.353	0					29	16	3	0	0	0	0.7043	1	1325	1325		42.474	1.9018	1	601290			42690	14494	35282	35305	46165	46165					0.03407595120188489
PITKHGEID	9	Unmodified	_PITKHGEID_					0	0	0		ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	ENSG00000100519|ENST00000445930|PSMC6	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.2593078613281	2	505.269281	1008.52401	-0.34258	-0.0001731	-1.4306	-0.00072282	-1.7732	-0.00089592	505.2684708077722	80.124	0.80565	77.784	77.463	78.268	-2.3399					28	15	2	0	0	0	0.027418	1	4397	4397		79.451	30.009	1	155600			42691	2080	35283	35306	46166	46166					0.02008866063579262
PITKRIRHHP	10	Unmodified	_PITKRIRHHP_					0	0	0		ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	628.3023071289062	2	627.88073	1253.74691	0.11459	7.1946E-05	-1.2917	-0.00081105	-1.1771	-0.0007391	627.8798160215251	57.515	0.61163	54.17	53.883	54.495	-3.3449					22	11	3	0	0	0	0.026915	1	3729	3729		35.618	12.576	1	53319			42692	4677	35284	35307	46167	46167					0.1301840463931967
PITKRIRHHP	10	Unmodified	_PITKRIRHHP_					0	0	0		ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	ENSG00000138356|ENST00000374700|AOX1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	627.88073	1253.74691	-1.4679	-0.00092164	0.39447	0.00024768	-1.0734	-0.00067396	627.8805207977322	56.798	0.69436	53.994	53.671	54.366	-2.804	-0.088283	0.0018903	NaN	35.618	15	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17319			42693	4677	35284	35307							0.1301840463931967
PITLFRLSI	9	Unmodified	_PITLFRLSI_					0	0	0			REV__ENST00000477386.1_1_X:14044301-14045241:-|nuORF	REV__ENST00000477386.1_1_X:14044301-14045241:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	530.332275390625	2	530.331685	1058.64882	0.10186	5.402E-05	-0.28124	-0.00014915	-0.17938	-9.5129E-05	530.331407055981	130.5	1.1434	130.27	129.96	131.1	-0.22697					41	22	3	0	0	0	0.37135	2	12850	12833;12850		54.776	5.2403	1	159590	+		42694	26387	35285	35308	46168;46169	46169					0.12183783270756976
PITQKKRA	8	Unmodified	_PITQKKRA_					0	0	0			REV__L1PB1_dup435|chr1:148902763-148905178:-|1.8547645190966555|0.2878265206874703|2.69|429.0|76|3|sense	REV__L1PB1_dup435|chr1:148902763-148905178:-|1.8547645190966555|0.2878265206874703|2.69|429.0|76|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.7360534667969	2	471.298176	940.581799	-0.57559	-0.00027127	0.82164	0.00038724	0.24605	0.00011596	471.29837089523465	37.614	0.22922	37.614	37.485	37.714	0					7	4	2	0	0	0	0.028476	1	2065	2065		50.025	16.509	1	31945	+		42695	28589	35286	35309	46170	46170					0.10913172779657998
PITVMLQNKN	10	Unmodified	_PITVMLQNKN_					0	0	0			REV__tr|A0A7D7A2X2|A0A7D7A2X2_9CLOTPhagetailtapemeasureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10220PE=4SV=1	REV__tr|A0A7D7A2X2|A0A7D7A2X2_9CLOTPhagetailtapemeasureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10220PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.8004760742188	2	579.320991	1156.62743	0.87326	0.0005059	1.2189	0.00070615	2.0922	0.001212	579.3212826686814	144.88	1.1772	144.88	144.55	145.73	0					46	24	3	0	0	0	0.026734	1	16960	16960		47.657	17.154	1	85957	+		42696	32557	35287	35310	46171	46171					0.05538030179741327
PIVHHLVNL	9	Unmodified	_PIVHHLVNL_					0	0	0			REV__ENSG00000184478|ENST00000641160|OR56A3	REV__ENSG00000184478|ENST00000641160|OR56A3	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.7974243164062	2	521.313826	1040.6131	1.6836	0.00087767	2.2056	0.0011498	3.8892	0.0020275	521.8163055555208	82.464	0.67454	82.464	82.02	82.694	0					30	15	3	0	0	0	0.027462	1	8525	8525		33.516	1.9858	1	254650	+		42697	22432	35288	35311	46172	46172					0.09441745813774105
PIVHIPREPG	10	Unmodified	_PIVHIPREPG_					0	0	0		nc|ENSG00000144045|Q8TE96-2|DQX1;ENSG00000144045|ENST00000404568|DQX1;nc|ENSG00000144045|Q8TE96-3|DQX1;ENST00000473508.1_1_2:74750418-74753390:-|nuORF;ENST00000495597.1_1_2:74751010-74751370:-|nuORF	nc|ENSG00000144045|Q8TE96-2|DQX1	nc|ENSG00000144045|Q8TE96-2|DQX1	MULTI-MSMS	OvCa9_classI_Rep2	2	557.8212890625	2	557.822015	1113.62948	0.27631	0.00015413	-0.32005	-0.00017853	-0.043736	-2.4397E-05	557.8217188413842	98.133	1.2816	97.24	96.924	98.206	-0.89305					56	25	3	0	0	0	0.59703	1	8910	8910		42.396	1.8235	1	327620			42698	5126	35289	35312	46173	46173					0.0772082697985752
PIVHIPREPG	10	Unmodified	_PIVHIPREPG_					0	0	0		nc|ENSG00000144045|Q8TE96-2|DQX1;ENSG00000144045|ENST00000404568|DQX1;nc|ENSG00000144045|Q8TE96-3|DQX1;ENST00000473508.1_1_2:74750418-74753390:-|nuORF;ENST00000495597.1_1_2:74751010-74751370:-|nuORF	nc|ENSG00000144045|Q8TE96-2|DQX1	nc|ENSG00000144045|Q8TE96-2|DQX1	MULTI-MSMS	OvCa9_classI_Rep3	3	557.8233032226562	2	557.822015	1113.62948	-0.58395	-0.00032574	0.58011	0.0003236	-0.0038469	-2.1459E-06	557.8222651421044	98.984	1.1357	97.299	97.061	98.196	-1.685					51	21	4	0	0	0	0.42962	1	6643	6643		64.207	16.55	1	446420			42699	5126	35289	35312	46174	46174					0.0772082697985752
PIVHIPREPG	10	Unmodified	_PIVHIPREPG_					0	0	0		nc|ENSG00000144045|Q8TE96-2|DQX1;ENSG00000144045|ENST00000404568|DQX1;nc|ENSG00000144045|Q8TE96-3|DQX1;ENST00000473508.1_1_2:74750418-74753390:-|nuORF;ENST00000495597.1_1_2:74751010-74751370:-|nuORF	nc|ENSG00000144045|Q8TE96-2|DQX1	nc|ENSG00000144045|Q8TE96-2|DQX1	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.8226318359375	2	557.822015	1113.62948	0.0082858	4.622E-06	0.028828	1.6081E-05	0.037114	2.0703E-05	557.8219017203653	99.505	1.1768	97.18	96.951	98.128	-2.3253					55	22	4	0	0	0	0.55359	1	8873	8873		47.657	8.8512	1	410540			42700	5126	35289	35312	46175	46175					0.0772082697985752
PIVIPPSID	9	Unmodified	_PIVIPPSID_					0	0	0			REV__ENSG00000058056|ENST00000263966|USP13	REV__ENSG00000058056|ENST00000263966|USP13	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.5879211425781	2	475.781493	949.548434	-0.89092	-0.00042388	1.6346	0.00077772	0.74369	0.00035383	475.78199910759656	27.748	0.29967	27.748	27.641	27.941	0					8	5	2	0	0	0	0.027462	1	863	863		19.36	1.0356	1	24400	+		42701	16723	35290	35313	46176	46176					0.07164126217082867
PIVLHLPLS	9	Unmodified	_PIVLHLPLS_					0	0	0			REV__ATXN1|p.Q480L|1|0.13|ENSG00000124788|chr6:16326872-16326872|T/A|missense_variant	REV__ATXN1|p.Q480L|1|0.13|ENSG00000124788|chr6:16326872-16326872|T/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	494.7644958496094	2	494.813128	987.611703	-0.17752	-8.784E-05	-4.0486	-0.0020033	-4.2262	-0.0020912	494.8110631323084	67.228	1.039	64.567	64.199	65.238	-2.661					43	20	3	0	0	0	0.027462	1	5304	5304		26.796	0	1	142240	+		42702	15685	35291	35314	46177	46177					0.11740111724986946
PIVLILNT	8	Unmodified	_PIVLILNT_					0	0	0		tr|A0A553SQY5|A0A553SQY5_NIACIThioredoxinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07495PE=4SV=1	tr|A0A553SQY5|A0A553SQY5_NIACIThioredoxinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07495PE=4SV=1	tr|A0A553SQY5|A0A553SQY5_NIACIThioredoxinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07495PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	441.7874450683594	2	441.786579	881.558604	1.974	0.00087209	1.2013	0.00053073	3.1753	0.0014028	441.7869815621319	65.076	1.9762	62.352	61.811	63.787	-2.7245					98	38	4	0	0	0	0.74595	1	4992	4992		14.664	0	1	329800			42703	34209	35292	35315	46178	46178					0.11308733942325944
PIVVRKIVQVR	11	Unmodified	_PIVVRKIVQVR_					0	0	0			REV__tr|A0A553SUI5|A0A553SUI5_NIACIABCtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_07035PE=3SV=1	REV__tr|A0A553SUI5|A0A553SUI5_NIACIABCtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_07035PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	436.2615661621094	3	436.294235	1305.86087	1.7091	0.00074566	3.5052	0.0015293	5.2143	0.002275	436.2957848765317	64.536	0.30225	61.543	61.344	61.646	-2.9933					8	5	2	0	0	0	0.025995	1	2519	2519		23.378	11.446	1	13490	+		42704	31082	35293	35316	46179	46179					0.22017874681523608
PIWLTARR	8	Unmodified	_PIWLTARR_					0	0	0			REV__nc|ENSG00000136699|Q9NXE4-5|SMPD4	REV__nc|ENSG00000136699|Q9NXE4-5|SMPD4	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.30218505859375	2	506.806168	1011.59778	-0.25919	-0.00013136	-2.9754	-0.001508	-3.2346	-0.0016393	506.8046683567798	23.334	0.30205	23.334	23.195	23.497	0					8	5	2	0	0	0	0.028476	1	322	322		19.36	5.5846	1	14134	+		42705	28875	35294	35317	46180	46180					0.09244879016546292
PIWNFVRLRDY	11	Unmodified	_PIWNFVRLRDY_					0	0	0			REV__IFT172|p.R1483Sfs*10|1|0.16|ENSG00000138002|chr2:27447902-27447903|-/ACTGCAAGCTCCGCTTCCCGGGTTCA|frameshift_variant	REV__IFT172|p.R1483Sfs*10|1|0.16|ENSG00000138002|chr2:27447902-27447903|-/ACTGCAAGCTCCGCTTCCCGGGTTCA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.7785949707031	3	493.601616	1477.78302	-0.62354	-0.00030778	-3.5419	-0.0017483	-4.1654	-0.0020561	493.93418816051224	55.301	0.37314	55.301	55.107	55.48	0					16	8	2	0	0	0	0.025955	1	4511	4511		24.232	0	1	513800	+		42706	19500	35295	35318	46181	46181					0.06323817025509015
PIWRFKGF	8	Unmodified	_PIWRFKGF_					0	0	0			REV__ENST00000369724.4_1_6:83904036-83904183:+|nuORF	REV__ENST00000369724.4_1_6:83904036-83904183:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	526.3008422851562	2	525.797812	1049.58107	0.96919	0.0005096	0.0046677	2.4543E-06	0.97386	0.00051205	526.299503865265	144.78	0.68147	144.78	144.5	145.18	0					32	13	3	0	0	0	0.69415	1	16937	16937		44.531	11.015	1	105820	+		42707	24944	35296	35319	46182	46182					0.05826378130609555
PIWVVNVDP	9	Unmodified	_PIWVVNVDP_					0	0	0			REV__ENST00000577760.1_1_17:37009629-37009770:-|nuORF	REV__ENST00000577760.1_1_17:37009629-37009770:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.8096313476562	2	519.784567	1037.55458	-0.13388	-6.9591E-05	-3.961	-0.0020589	-4.0949	-0.0021285	519.7823974022605	98.376	1.3879	97.483	97.216	98.604	-0.89305					44	27	2	0	0	0	0.027462	1	8965	8965		45.952	11.779	1	248940	+		42708	27795	35297	35320	46183	46183					0.037306444486148393
PIWVVNVDP	9	Unmodified	_PIWVVNVDP_					0	0	0			REV__ENST00000577760.1_1_17:37009629-37009770:-|nuORF	REV__ENST00000577760.1_1_17:37009629-37009770:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	519.784567	1037.55458	2.5792	0.0013406	-10.726	-0.0055753	-8.147	-0.0042347	520.2829749377078	97.396	0.47365	97.396	97.093	97.566	0	-0.024623	-0.0076372	NaN	45.952	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127030	+		42709	27795	35297	35320							0.037306444486148393
PIWVVNVDP	9	Unmodified	_PIWVVNVDP_					0	0	0			REV__ENST00000577760.1_1_17:37009629-37009770:-|nuORF	REV__ENST00000577760.1_1_17:37009629-37009770:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	519.784567	1037.55458	0.0088332	4.5914E-06	-3.1799	-0.0016529	-3.1711	-0.0016483	519.7826712537362	99.117	1.2369	97.432	97.061	98.297	-1.685	0.011503	0.00020771	NaN	45.952	59	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	369240	+		42710	27795	35297	35320							0.037306444486148393
PIWVVNVDP	9	Unmodified	_PIWVVNVDP_					0	0	0			REV__ENST00000577760.1_1_17:37009629-37009770:-|nuORF	REV__ENST00000577760.1_1_17:37009629-37009770:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	519.784567	1037.55458	-1.1561	-0.00060091	-2.3636	-0.0012286	-3.5197	-0.0018295	519.7832682727159	99.697	1.125	97.371	96.899	98.024	-2.3253	-0.049284	0.0010563	NaN	45.952	49	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	313500	+		42711	27795	35297	35320							0.037306444486148393
PIYLLPKMV	9	Unmodified	_PIYLLPKMV_					0	0	0			REV__ENSG00000153066|ENST00000283033|TXNDC11	REV__ENSG00000153066|ENST00000283033|TXNDC11	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3294067382812	2	537.325014	1072.63547	-0.98489	-0.0005292	1.8068	0.00097086	0.82196	0.00044166	537.3258743854038	34.748	0.61152	34.748	34.586	35.198	0					20	12	3	0	0	0	0.027462	1	1681	1681		28.254	0	1	109410	+		42712	20319	35298	35321	46184	46184					0.10206209167154157
PIYVRVEGF	9	Unmodified	_PIYVRVEGF_					0	0	0		NLRP7|p.S610Tfs*6|1|0.07|ENSG00000167634|chr19:54938990-54938991|-/GGAGGTTGCAG|frameshift_variant;nc|ENSG00000167634|Q8WX94|NLRP7;nc|ENSG00000167634|Q8WX94-2|NLRP7;ENSG00000167634|ENST00000588756|NLRP7	NLRP7|p.S610Tfs*6|1|0.07|ENSG00000167634|chr19:54938990-54938991|-/GGAGGTTGCAG|frameshift_variant	NLRP7|p.S610Tfs*6|1|0.07|ENSG00000167634|chr19:54938990-54938991|-/GGAGGTTGCAG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.8135375976562	2	540.297842	1078.58113	2.5906	0.0013997	-2.9496	-0.0015936	-0.35891	-0.00019392	540.2959849220321	75.542	0.38868	75.542	75.292	75.68	0					18	9	3	0	0	0	0.027462	1	7547	7547		33.516	14.412	1	1126800			42713	6819	35299	35322	46185	46185					0.04498333339961391
PKAAKPKKA	9	Unmodified	_PKAAKPKKA_					0	0	0		ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	ENSG00000168298|ENST00000304218|H1-4	MSMS	OvCa9_classI_Rep2	2	469.8101501464844	2	469.810919	937.607286	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.107	1	22.397	21.897	22.897	-2.7097								0	0	0	0.22801	1	211	211		21.96	2.5999	1				42714	6889	35300	35323	46186	46186					0.13598647302069367
PKAEVALLYH	10	Unmodified	_PKAEVALLYH_					0	0	0		ENST00000344204.8_1_5:14508704-14508824:+|nuORF	ENST00000344204.8_1_5:14508704-14508824:+|nuORF	ENST00000344204.8_1_5:14508704-14508824:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	570.8240356445312	2	570.824224	1139.63389	-1.4032	-0.00080099	-3.2125	-0.0018338	-4.6157	-0.0026347	570.8225609125153	84.075	2.0116	81.814	81.434	83.445	-2.261					125	41	4	0	0	0	0.66721	1	4873	4873		34.173	0.25091	1	2084000			42715	10610	35301	35324	46187	46187					0.06966291402750358
PKAMKLME	8	Unmodified	_PKAMKLME_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OvCa99_classI_Rep5	1	474.259765625	2	474.256274	946.497995	-0.84146	-0.00039907	4.3558	0.0020658	3.5143	0.0016667	474.258169093475	104.52	1.2937	104.52	104.11	105.4	0					79	29	4	0	0	0	0.56195	1	11700	11700		71.296	2.2027	1	5521500	+		42716	16701	35302	35325	46188	46188					0.022605572960742393
PKAPCHDDTP	10	Unmodified	_PKAPCHDDTP_					0	0	0			REV__nc|ENSG845|O71037|ERVK-19_env	REV__nc|ENSG845|O71037|ERVK-19_env	MULTI-SECPEP	OvCa9_classI_Rep4_	4	539.8133544921875	2	540.742573	1079.47059	-1.233	-0.00066673	1.5813	0.00085509	0.34833	0.00018836	541.2456530668647	101.45	0.43468	99.185	99.02	99.455	-2.2665					12	8	2	0	0	0	0.027056	1	9138	9138		9.7057	0	1	17815	+		42717	29233	35303	35326	46189	46189					-0.06596254710620997
PKAPCHDDTP	10	Unmodified	_PKAPCHDDTP_					0	0	0			REV__nc|ENSG845|O71037|ERVK-19_env	REV__nc|ENSG845|O71037|ERVK-19_env	MULTI-MATCH	OvCa9_classI_Rep3	3		2	540.742573	1079.47059	-0.26997	-0.00014599	-0.12193	-6.593E-05	-0.3919	-0.00021192	540.7424152791833	100.91	0.70976	99.307	98.946	99.656	-1.6053	0.043956	0.0015262	NaN	25.574	16	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18289	+		42718	29233	35303	35326							-0.06596254710620997
PKAPIPFRKKE	11	Unmodified	_PKAPIPFRKKE_					0	0	0		nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1	nc|ENSG00000165219|Q14C86-5|GAPVD1	nc|ENSG00000165219|Q14C86-5|GAPVD1	MSMS	OvCa99_classI_Rep5	1	437.6046142578125	3	437.602957	1309.78704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.028	1	21.028	20.528	21.528	0								0	0	0	0.19474	1	83	83		13.508	0.69623	1				42719	6537	35304	35327	46190	46190					0.14453906519202064
PKAPKRPPS	9	Unmodified	_PKAPKRPPS_					0	0	0		ENST00000402555.2_1_6:53100721-53100889:-|nuORF	ENST00000402555.2_1_6:53100721-53100889:-|nuORF	ENST00000402555.2_1_6:53100721-53100889:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.2982482910156	2	489.298176	976.581799	-0.53933	-0.00026389	0.20433	9.9979E-05	-0.335	-0.00016391	489.29812618715977	46.129	1.2425	43.056	42.771	44.014	-3.0724					56	23	3	0	0	0	0.5811	1	2423	2423		34.173	3.6689	1	565190			42720	11433	35305	35328	46191	46191					0.0925717277965532
PKAPTRTLPT	10	Unmodified	_PKAPTRTLPT_					0	0	0			REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	REV__nc|ENSG00000197535|Q9Y4I1-2|MYO5A	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.772705078125	2	541.321848	1080.62914	0.065388	3.5396E-05	-0.14769	-7.9949E-05	-0.082305	-4.4553E-05	541.3215413962629	97.996	1.0245	96.237	95.962	96.986	-1.7595					46	19	3	0	0	0	0.026681	1	6583	6583		36.447	10.873	1	123940	+		42721	22932	35306	35329	46192	46192					0.09205407259992171
PKASYALTF	9	Unmodified	_PKASYALTF_					0	0	0			REV__nc|ENSG00000156219|Q13508-3|ART3	REV__nc|ENSG00000156219|Q13508-3|ART3	MULTI-MSMS	OvCa9_classI_Rep2	2	499.271728515625	2	499.271293	996.528032	1.4485	0.00072321	-1.6267	-0.00081217	-0.17819	-8.8963E-05	499.2703458737483	88.651	1.6275	87.284	86.69	88.318	-1.3676					91	32	4	0	0	0	0.2422	2	7758	7758;7792		69.628	3.1983	1	1151300	+		42722	20467	35307	35330	46193;46194	46193					0.029629555572682875
PKASYALTF	9	Unmodified	_PKASYALTF_					0	0	0			REV__nc|ENSG00000156219|Q13508-3|ART3	REV__nc|ENSG00000156219|Q13508-3|ART3	MULTI-MSMS	OvCa9_classI_Rep3	3	499.2723083496094	2	499.271293	996.528032	-0.72327	-0.00036111	0.40151	0.00020046	-0.32177	-0.00016065	499.271356214281	89.338	1.5163	87.207	86.846	88.362	-2.1309					90	29	4	0	0	0	0.2422	1	5473	5473		69.628	0.8408	1	2067700	+		42723	20467	35307	35330	46195	46195					0.029629555572682875
PKAVKVEKA	9	Unmodified	_PKAVKVEKA_					0	0	0		ENST00000462447.5_1_X:63551435-63568608:-|nuORF	ENST00000462447.5_1_X:63551435-63568608:-|nuORF	ENST00000462447.5_1_X:63551435-63568608:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	485.30926513671875	2	485.30821	968.601866	2.5356	0.0012306	-2.0533	-0.00099646	0.48236	0.00023409	485.3069019517927	27.245	0.47728	24.536	24.394	24.871	-2.7097					13	10	2	0	0	0	0.7044	1	453	453		16.473	1.809	1	15573			42724	12204	35308	35331	46196	46196					0.11630923719610564
PKCHLGGVFE	10	Carbamidomethyl (C)	_PKC(Carbamidomethyl (C))HLGGVFE_	PKC(1)HLGGVFE		PKC(46)HLGGVFE		0	1	0			REV__ENSG00000135220|ENST00000251566|UGT2A3;REV__ENSG00000271271|ENST00000604629|UGT2A2	REV__ENSG00000135220|ENST00000251566|UGT2A3	MULTI-MSMS	OvCa9_classI_Rep2	2	572.2861938476562	2	572.284408	1142.55426	-1.4852	-0.00084994	4.2489	0.0024316	2.7637	0.0015816	572.2866735153697	32.713	1.6873	30.003	29.53	31.218	-2.7097					70	33	3	0	0	0	0.5675	1	1126	1126		45.972	8.1607	1	392360	+		42725	19266;23608	35309	35332	46197	46197	213				-0.011310985428735876
PKCSKLCKCE	10	Carbamidomethyl (C)	_PKCSKLC(Carbamidomethyl (C))KCE_	PKCSKLC(0.987)KC(0.013)E		PKC(-36)SKLC(19)KC(-19)E		0	1	0			REV__nc|ENSG00000185420|Q9H7B4-3|SMYD3	REV__nc|ENSG00000185420|Q9H7B4-3|SMYD3	MULTI-MSMS	OvCa99_classI_Rep5	1	598.2869262695312	2	598.285237	1194.55592	0.2346	0.00014036	2.6869	0.0016075	2.9215	0.0017479	598.2868352446302	32.624	0.58626	32.624	32.403	32.989	0					32	11	5	0	0	0	0.44722	1	1434	1434		61.691	22.438	3	571650	+		42726	22501	35310	35333	46198	46198	261				-0.033575488408132514
PKDAELRRL	9	Unmodified	_PKDAELRRL_					0	0	0		ENSG00000168286|ENST00000303596|THAP11	ENSG00000168286|ENST00000303596|THAP11	ENSG00000168286|ENST00000303596|THAP11	MULTI-SECPEP	OvCa9_classI_Rep3	3	548.3656616210938	2	549.324922	1096.63529	0.33416	0.00018356	-0.64186	-0.00035259	-0.3077	-0.00016903	549.3245473069512	68.018	0.49905	65.131	64.889	65.388	-2.8873					12	9	2	0	0	0	0.027462	1	2916	2916		29.15	0	1	14245			42727	6887	35311	35334	46199	46199					0.0908392549151813
PKDKIDEII	9	Unmodified	_PKDKIDEII_					0	0	0		tr|A0A7D6ZYX1|A0A7D6ZYX1_9CLOTPhosphodiesterglycosidasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03795PE=4SV=1	tr|A0A7D6ZYX1|A0A7D6ZYX1_9CLOTPhosphodiesterglycosidasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03795PE=4SV=1	tr|A0A7D6ZYX1|A0A7D6ZYX1_9CLOTPhosphodiesterglycosidasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03795PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.8085327148438	2	535.808239	1069.60193	-1.5832	-0.00084828	-1.5417	-0.00082607	-3.1249	-0.0016744	535.8076252711738	46.181	0.88342	43.109	42.824	43.707	-3.0724					46	16	4	0	0	0	0.48047	1	2398	2398		44.377	3.599	1	313360			42728	35935	35312	35335	46200	46200					0.06990878928945676
PKDKLQNALEK	11	Unmodified	_PKDKLQNALEK_					0	0	0			REV__ENSG00000141469|ENST00000321925|SLC14A1	REV__ENSG00000141469|ENST00000321925|SLC14A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	428.2186584472656	3	428.58211	1282.7245	-0.25323	-0.00010853	3.7071	0.0015888	3.4539	0.0014803	428.5833178361855	38.756	0.13175	38.756	38.661	38.793	0					4	2	2	0	0	0	0.026058	1	2224	2224		14.243	0	1	10114	+		42729	19742	35313	35336	46201	46201					0.09444715660356451
PKDLARPLL	9	Unmodified	_PKDLARPLL_					0	0	0			REV__ENSG00000143126|ENST00000271332|CELSR2	REV__ENSG00000143126|ENST00000271332|CELSR2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.787353515625	2	511.821484	1021.62842	0.0045544	2.331E-06	-0.69045	-0.00035339	-0.68589	-0.00035106	511.82113536724785	109.64	2.0282	107.92	106.97	109	-1.7256					70	38	2	0	0	0	0.027462	1	10066	10066		47.657	0	1	145340	+		42730	19817	35314	35337	46202	46202					0.11846612610952434
PKDLGALLP	9	Unmodified	_PKDLGALLP_					0	0	0		ENST00000447563.5_1_7:158809599-158810334:+|nuORF	ENST00000447563.5_1_7:158809599-158810334:+|nuORF	ENST00000447563.5_1_7:158809599-158810334:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	462.2809753417969	2	462.28166	922.548768	-0.31533	-0.00014577	1.5811	0.0007309	1.2657	0.00058513	462.2816240398439	114.69	2.0254	114.58	114.16	116.18	-0.11777					96	40	3	0	0	0	0.22961	1	10945	10945		71.296	5.4925	1	274680			42731	12008	35315	35338	46203	46203					0.0843954593693752
PKDLIDKEKSL	11	Unmodified	_PKDLIDKEKSL_					0	0	0			REV__ENSG00000118873|ENST00000358951|RAB3GAP2	REV__ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-MSMS	OvCa9_classI_Rep3	3	643.373291015625	2	643.371735	1284.72892	-1.2703	-0.00081728	1.4677	0.0009443	0.19743	0.00012702	643.3726132601269	91.871	1.6827	89.847	89.534	91.216	-2.0241					93	34	5	0	0	0	0.082447	2	5778	5778;5796		93.598	9.9506	1	1255100	+		42732	18418	35316	35339	46204;46205	46204					0.0979418008328139
PKDLIDKEKSL	11	Unmodified	_PKDLIDKEKSL_					0	0	0			REV__ENSG00000118873|ENST00000358951|RAB3GAP2	REV__ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	643.371735	1284.72892	0.45059	0.0002899	0.34151	0.00021972	0.7921	0.00050962	643.3719443736512	90.872	1.4579	89.636	89.341	90.799	-1.2355	-0.12418	-0.0007307	NaN	93.598	85	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	735680	+		42733	18418	35316	35339							0.0979418008328139
PKDLIDKEKSL	11	Unmodified	_PKDLIDKEKSL_					0	0	0			REV__ENSG00000118873|ENST00000358951|RAB3GAP2	REV__ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	643.371735	1284.72892	-1.2703	-0.00081728	1.4677	0.0009443	0.19743	0.00012702	643.3726132601269	91.871	1.6827	89.847	89.534	91.216	-2.0241	0.086323	0.00071846	NaN	93.598	93	34	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1255100	+		42734	18418	35316	35339							0.0979418008328139
PKDQAKPGQTA	11	Unmodified	_PKDQAKPGQTA_					0	0	0			REV__ENSG00000180035|ENST00000613509|ZNF48	REV__ENSG00000180035|ENST00000613509|ZNF48	MULTI-SECPEP	OvCa9_classI_Rep2	2	570.8216552734375	2	570.80402	1139.59349	-0.37317	-0.00021301	-3.1119	-0.0017763	-3.4851	-0.0019893	570.8020726406924	82.858	2.0976	81.259	80.28	82.378	-1.5988					61	41	2	0	0	0	0.025541	1	7183	7183		80.455	25.678	1	58432	+		42735	22152	35317	35340	46206	46206					0.029273250123424077
PKDQDILPK	9	Unmodified	_PKDQDILPK_					0	0	0		ENSG00000149548|ENST00000344762|CCDC15	ENSG00000149548|ENST00000344762|CCDC15	ENSG00000149548|ENST00000344762|CCDC15	MULTI-SECPEP	OvCa9_classI_Rep2	2	527.3116455078125	2	527.300581	1052.58661	-1.6358	-0.00086256	-0.5662	-0.00029856	-2.202	-0.0011611	527.8020985279102	34.095	0.29548	31.386	31.168	31.464	-2.7097					6	5	2	0	0	0	0.027462	1	1279	1279		29.15	10.825	1	8200.6			42736	5471	35318	35341	46207	46207					0.062420121317472876
PKDSLPVHPL	10	Unmodified	_PKDSLPVHPL_					0	0	0			REV__ENST00000477973.3_2_3:72426341-72426569:-|nuORF	REV__ENST00000477973.3_2_3:72426341-72426569:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.290283203125	2	551.816399	1101.61824	-0.38398	-0.00021188	1.1237	0.00062007	0.73971	0.00040818	551.8170013418755	65.399	0.48419	61.914	61.694	62.179	-3.4854					16	9	2	0	0	0	0.026688	1	4735	4735		49.442	24.922	1	179360	+		42737	26398	35319	35342	46208	46208					0.07150004885693306
PKDSLPVHPL	10	Unmodified	_PKDSLPVHPL_					0	0	0			REV__ENST00000477973.3_2_3:72426341-72426569:-|nuORF	REV__ENST00000477973.3_2_3:72426341-72426569:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	551.816399	1101.61824	0.53372	0.00029451	0.84565	0.00046664	1.3794	0.00076116	551.8168862484209	64.509	0.94693	61.784	61.441	62.388	-2.7245	-0.064789	-0.00012432	NaN	49.442	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109020	+		42738	26398	35319	35342							0.07150004885693306
PKDVESYI	8	Unmodified	_PKDVESYI_					0	0	0		DDX21|p.V637*|1|0.26|ENSG00000165732|chr10:68978848-68978848|G/-|frameshift_variant;nc|ENSG00000165732|Q9NR30-2|DDX21;ENSG00000165732|ENST00000354185|DDX21	DDX21|p.V637*|1|0.26|ENSG00000165732|chr10:68978848-68978848|G/-|frameshift_variant	DDX21|p.V637*|1|0.26|ENSG00000165732|chr10:68978848-68978848|G/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.3132019042969	2	475.745108	949.475663	-0.76724	-0.00036501	-2.2568	-0.0010736	-3.024	-0.0014387	475.743947287472	28.115	0.24907	28.115	27.991	28.24	0					7	4	2	0	0	0	0.028476	1	887	887		34.173	5.023	1	19498			42739	718	35320	35343	46209	46209					-0.001096275763416088
PKEAHLVSH	9	Unmodified	_PKEAHLVSH_					0	0	0			REV__ENSG00000139597|ENST00000380130|N4BP2L1	REV__ENSG00000139597|ENST00000380130|N4BP2L1	MULTI-SECPEP	OvCa9_classI_Rep3	3	509.80584716796875	2	509.277441	1016.54033	0.17583	8.9544E-05	2.5551	0.0013013	2.7309	0.0013908	509.2800517585836	71.044	0.40418	68.325	68.112	68.516	-2.7196					11	7	2	0	0	0	0.027448	1	3296	3296		44.117	9.9443	1	9170.6	+		42740	19620	35321	35344	46210	46210					0.03271992020336256
PKEELRTQL	9	Unmodified	_PKEELRTQL_					0	0	0			REV__ENSG00000120451|ENST00000265909|SNX19	REV__ENSG00000120451|ENST00000265909|SNX19	MULTI-MSMS	OvCa9_classI_Rep2	2	557.3170166015625	2	557.316763	1112.61897	-1.9914	-0.0011099	2.7107	0.0015107	0.71932	0.00040089	557.3181775816473	36.131	1.4315	33.421	33.152	34.583	-2.7097					66	28	4	0	0	0	0.56889	1	1548	1548		35.618	2.8059	1	384370	+		42741	18500	35322	35345	46211	46211					0.06716799534774509
PKEKVQLTF	9	Unmodified	_PKEKVQLTF_					0	0	0		tr|A0A553SHZ8|A0A553SHZ8_NIACITypeVIIsecretionproteinEssCOS=NialliacirculansOX=1397GN=essCPE=4SV=1	tr|A0A553SHZ8|A0A553SHZ8_NIACITypeVIIsecretionproteinEssCOS=NialliacirculansOX=1397GN=essCPE=4SV=1	tr|A0A553SHZ8|A0A553SHZ8_NIACITypeVIIsecretionproteinEssCOS=NialliacirculansOX=1397GN=essCPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3143920898438	2	545.318774	1088.623	-1.9768	-0.001078	-1.9702	-0.0010744	-3.947	-0.0021524	545.3174971514211	139.12	3.9663	138.06	135.98	139.95	-1.0595					186	80	3	0	0	0	0.69403	1	11571	11571		19.997	0	1	94142			42742	33331	35323	35346	46212	46212					0.08222889028456848
PKELELPIK	9	Unmodified	_PKELELPIK_					0	0	0		tr|A0A7D6VT08|A0A7D6VT08_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14995PE=3SV=1	tr|A0A7D6VT08|A0A7D6VT08_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14995PE=3SV=1	tr|A0A7D6VT08|A0A7D6VT08_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14995PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.8093872070312	2	533.828975	1065.6434	0.020203	1.0785E-05	-1.4043	-0.00074967	-1.3841	-0.00073889	533.8283174862171	31.004	0.24457	31.004	30.831	31.076	0					7	4	2	0	0	0	0.027353	1	1223	1223		71.877	0	1	35455			42743	35076	35324	35347	46213	46213					0.11320059688273432
PKELLARVK	9	Unmodified	_PKELLARVK_					0	0	0		tr|A0A7D6VP61|A0A7D6VP61_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_21775PE=4SV=1	tr|A0A7D6VP61|A0A7D6VP61_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_21775PE=4SV=1	tr|A0A7D6VP61|A0A7D6VP61_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_21775PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	527.3435668945312	2	527.342584	1052.67061	2.2817	0.0012032	-2.4212	-0.0012768	-0.13953	-7.3579E-05	527.3412130770646	27.081	0.8382	24.371	24.073	24.911	-2.7097					49	23	3	0	0	0	0.69403	1	429	429		19.997	2.6318	1	32709			42744	34751	35325	35348	46214	46214					0.1463858801932929
PKELWVQQL	9	Unmodified	_PKELWVQQL_					0	0	0		ENSG00000137077|ENST00000259607|CCL21	ENSG00000137077|ENST00000259607|CCL21	ENSG00000137077|ENST00000259607|CCL21	MULTI-MSMS	OvCa9_classI_Rep3	3	570.8236083984375	2	570.824224	1139.63389	-1.4032	-0.00080099	-3.2125	-0.0018338	-4.6157	-0.0026347	570.8225609125153	84.075	2.0116	81.814	81.434	83.445	-2.261					125	41	4	0	0	0	0.38969	1	4879	4879		52.937	1.744	1	2084000			42745	4553	35326	35349	46215	46215					0.06966291402750358
PKENPEVKAE	10	Unmodified	_PKENPEVKAE_					0	0	0		ENSG00000186310|ENST00000373079|NAP1L3	ENSG00000186310|ENST00000373079|NAP1L3	ENSG00000186310|ENST00000373079|NAP1L3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	570.8231811523438	2	570.798403	1139.58225	0.64192	0.00036641	3.7691	0.0021514	4.411	0.0025178	570.8003991683901	84.219	1.0801	81.556	81.118	82.198	-2.6629					33	22	2	0	0	0	0.026465	1	7082	7082		54.722	20.801	1	70638			42746	8329	35327	35350	46216	46216					0.018045029181848804
PKEQTKGFLG	10	Unmodified	_PKEQTKGFLG_					0	0	0			REV__ENST00000409225.2_1_2:86756493-86790471:-|nuORF	REV__ENST00000409225.2_1_2:86756493-86790471:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.29931640625	2	552.806031	1103.59751	-0.99413	-0.00054956	2.9151	0.0016115	1.921	0.0010619	552.8075171629388	27.22	0.64903	27.22	26.992	27.641	0					28	12	4	0	0	0	0.026891	1	772	772		31.53	0	1	218360	+		42747	18254	35328	35351	46217	46217					0.04985414506040797
PKERIRTEK	9	Unmodified	_PKERIRTEK_					0	0	0		ENST00000553277.5_1_12:57522611-57532245:+|nuORF	ENST00000553277.5_1_12:57522611-57532245:+|nuORF	ENST00000553277.5_1_12:57522611-57532245:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	579.8357543945312	2	578.843479	1155.67241	-0.94009	-0.00054416	0.86516	0.00050079	-0.074922	-4.3368E-05	579.3456691008085	64.219	0.68348	61.495	61.234	61.917	-2.7245					14	12	2	0	0	0	0.027462	1	4895	4895		51.193	13.381	1	15449			42748	13622	35329	35352	46218	46218					0.10079597037292842
PKESPPEIL	9	Unmodified	_PKESPPEIL_					0	0	0		ENSG00000049769|ENST00000055335|PPP1R3F;nc|ENSG00000049769|Q6ZSY5-2|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	ENSG00000049769|ENST00000055335|PPP1R3F	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.8079528808594	2	505.281857	1008.54916	-0.86678	-0.00043797	-1.221	-0.00061694	-2.0878	-0.0010549	505.28117274934857	40.059	0.51136	37.105	36.963	37.474	-2.9541					15	9	2	0	0	0	0.027462	1	1695	1695		10.866	0	1	13489			42749	1174	35330	35353	46219	46219					0.0452292086615671
PKEYAPAALM	10	Oxidation (M)	_PKEYAPAALM(Oxidation (M))_		PKEYAPAALM(1)		PKEYAPAALM(46)	0	0	1		tr|A0A553SRZ0|A0A553SRZ0_NIACILipidIIflippaseAmjOS=NialliacirculansOX=1397GN=amjPE=3SV=1	tr|A0A553SRZ0|A0A553SRZ0_NIACILipidIIflippaseAmjOS=NialliacirculansOX=1397GN=amjPE=3SV=1	tr|A0A553SRZ0|A0A553SRZ0_NIACILipidIIflippaseAmjOS=NialliacirculansOX=1397GN=amjPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	553.78173828125	2	553.781167	1105.54778	0.81704	0.00045246	1.2422	0.00068789	2.0592	0.0011404	553.7816142945695	152.56	0.884	152.56	152.21	153.1	0					43	21	3	0	0	0	0.5675	1	17863	17863		45.972	8.1607	1	230790			42750	34313	35331	35354	46220	46220		758			-0.0007703649430368387
PKFFIPIHG	9	Unmodified	_PKFFIPIHG_					0	0	0		tr|A0A553SNU9|A0A553SNU9_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	tr|A0A553SNU9|A0A553SNU9_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	tr|A0A553SNU9|A0A553SNU9_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3463134765625	2	528.30547	1054.59639	2.4343	0.001286	-3.4549	-0.0018253	-1.0207	-0.00053923	528.3032437304483	75.755	0.19337	75.755	75.68	75.874	0					6	4	2	0	0	0	0.027456	1	7554	7554		26.796	0	1	104430			42751	33964	35332	35355	46221	46221					0.07127244927801257
PKFFMPIH	8	Unmodified	_PKFFMPIH_					0	0	0		tr|A0A553SPH8|A0A553SPH8_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	tr|A0A553SPH8|A0A553SPH8_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	tr|A0A553SPH8|A0A553SPH8_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.8412170410156	2	508.772948	1015.53134	-0.19603	-9.9737E-05	-1.6119	-0.00082008	-1.8079	-0.00091981	508.77202998435365	60.283	0.28081	60.283	60.153	60.434	0					9	6	2	0	0	0	0.028476	1	5242	5242		25.45	0	1	197740			42752	34046	35333	35356	46222	46222					0.02419927130290489
PKFIKKLYFP	10	Unmodified	_PKFIKKLYFP_					0	0	0		ENST00000315872.10_1_2:11323403-11323562:-|nuORF	ENST00000315872.10_1_2:11323403-11323562:-|nuORF	ENST00000315872.10_1_2:11323403-11323562:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	640.8894653320312	2	640.891909	1279.76927	-0.17045	-0.00010924	-2.8451	-0.0018234	-3.0155	-0.0019326	640.8899760073222	130.96	1.1409	130.73	130.4	131.54	-0.22697					67	22	4	0	0	0	0.7759	1	12937	12937		21.96	1.1227	1	368320			42753	10336	35334	35357	46223	46223					0.14057191264373614
PKFKLEKDYDL	11	Unmodified	_PKFKLEKDYDL_					0	0	0		CON__ENSEMBL:ENSBTAP00000018574	CON__ENSEMBL:ENSBTAP00000018574	CON__ENSEMBL:ENSBTAP00000018574	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.76806640625	3	465.922132	1394.74457	-0.74406	-0.00034667	-0.56207	-0.00026188	-1.3061	-0.00060856	466.25645872128985	48.523	0.3606	45.415	45.296	45.657	-3.1077					9	6	2	0	0	0	0.026024	1	2693	2693		25.068	7.2346	1	17217		+	42754	604	35335	35358	46224	46224					0.06298466600333086
PKFLAVIVE	9	Unmodified	_PKFLAVIVE_					0	0	0		ENSG00000172725|ENST00000341356|CORO1B;ENST00000453768.6_1_11:67208484-67210099:-|nuORF	ENSG00000172725|ENST00000341356|CORO1B	ENSG00000172725|ENST00000341356|CORO1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.296630859375	2	508.312961	1014.61137	0.57503	0.00029229	3.2156	0.0016345	3.7906	0.0019268	508.314680108626	45.563	0.34552	45.563	45.454	45.8	0					12	7	2	0	0	0	0.027392	1	3172	3172		63.306	0	1	131290			42755	7314	35336	35359	46225	46225					0.10464692005132292
PKFQDGDL	8	Unmodified	_PKFQDGDL_					0	0	0		ENST00000494593.1_1_11:67352122-67352251:+|nuORF;ENST00000489040.1_1_11:67351618-67352251:+|nuORF;ENSG00000084207|ENST00000398606|GSTP1	ENST00000494593.1_1_11:67352122-67352251:+|nuORF	ENST00000494593.1_1_11:67352122-67352251:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	460.2296142578125	2	460.229625	918.444697	1.2982	0.00059749	-1.7922	-0.00082482	-0.49394	-0.00022733	460.2286735408768	138.68	1.3013	138.68	138.4	139.7	0					55	26	3	0	0	0	0.6345	1	16170	16170		56.721	8.8055	1	1373900			42756	1712	35337	35360	46226	46226					-0.01778780890560938
PKGKPCPK	8	Unmodified	_PKGKPCPK_					0	0	0		nc|ENSG821|P63135|ERVK-7_pol;nc|ENSG855|P10266|ERVK-10_pol;nc|ENSG836|P61566|ERVK-24_env;nc|ENSG830|Q9HDB8|ERVK-5_env;nc|ENSG815|Q902F8|ERVK-8_env;nc|ENSG802|Q902F9|HERVK_113_env;nc|ENSG845|O71037|ERVK-19_env;nc|ENSG840|P61565|ERVK-21_env;nc|ENSG811|Q9UKH3|ERVK-9_env;nc|ENSG833|P61570|ERVK-25_env;nc|ENSG819|P61567|ERVK-7_env;nc|ENSG825|Q69384|ERVK-6_env	nc|ENSG821|P63135|ERVK-7_pol	nc|ENSG821|P63135|ERVK-7_pol	MULTI-SECPEP	OvCa99_classI_Rep5	1	427.253173828125	2	427.749473	853.484393	-0.15778	-6.7491E-05	-3.4736	-0.0014858	-3.6313	-0.0015533	427.7478116597226	54.028	1.1989	54.028	53.692	54.891	0					72	28	4	0	0	0	0.028476	1	4436	4436		12.207	7.8906	1	5728900			42757	15410	35338	35361	46227	46227					0.05179067579149432
PKGLIVQNVAL	11	Unmodified	_PKGLIVQNVAL_					0	0	0		chr11:82914851-82928777|407|21.27|0.97|4.45|+|2|DDIAS,DDIAS|2	chr11:82914851-82928777|407|21.27|0.97|4.45|+|2|DDIAS,DDIAS|2	chr11:82914851-82928777|407|21.27|0.97|4.45|+|2|DDIAS,DDIAS|2	MULTI-SECPEP	OvCa9_classI_Rep2	2	575.8807983398438	2	576.360973	1150.70739	0.34499	0.00019884	-1.0199	-0.00058783	-0.67491	-0.00038899	576.3601906497636	129.44	0.49379	129.21	129.02	129.51	-0.22696					13	9	2	0	0	0	0.025638	1	12697	12697		45.972	14.442	1	14147			42758	307	35339	35362	46228	46228					0.13806839845233299
PKGNYLTY	8	Unmodified	_PKGNYLTY_					0	0	0			REV__nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L	REV__nc|ENSG00000110427|Q6ZVL6-2|KIAA1549L	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.8066711425781	2	478.247818	954.481082	-1.0545	-0.00050432	-3.1679	-0.0015151	-4.2224	-0.0020194	478.24620421910623	67.61	1.2832	64.949	64.495	65.779	-2.661					50	25	3	0	0	0	0.028476	1	5317	5317		53.351	24.202	1	71779	+		42759	17982	35340	35363	46229	46229					0.0020209600612588474
PKGPFGDLGRE	11	Unmodified	_PKGPFGDLGRE_					0	0	0			REV__ENSG00000169436|ENST00000303045|COL22A1	REV__ENSG00000169436|ENST00000303045|COL22A1	MULTI-MSMS	OvCa9_classI_Rep2	2	586.8024291992188	2	586.806562	1171.59857	-5.211	-0.0030579	-0.81092	-0.00047585	-6.022	-0.0035337	586.8058911238584	159.27	2.2635	159.04	158.53	160.79	-0.22696					99	45	3	0	0	0	0.72516	1	16199	16199		13.454	0.49486	1	107570	+		42760	21463	35341	35364	46230	46230					0.019636288749325104
PKGPGLRP	8	Unmodified	_PKGPGLRP_					0	0	0			REV__ENST00000509805.5_1_5:69363243-69366626:+|nuORF	REV__ENST00000509805.5_1_5:69363243-69366626:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	411.2546691894531	2	411.253237	820.491922	0.84255	0.0003465	-0.52229	-0.0002148	0.32026	0.00013171	411.25293651518757	56.403	0.61246	56.403	56.22	56.833	0					23	14	2	0	0	0	0.74394	1	4676	4676		13.775	0.81615	1	863060	+		42761	21672	35342	35365	46231	46231					0.07449543171071582
PKGPGLRP	8	Unmodified	_PKGPGLRP_					0	0	0			REV__ENST00000509805.5_1_5:69363243-69366626:+|nuORF	REV__ENST00000509805.5_1_5:69363243-69366626:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	411.253237	820.491922	0.84255	0.0003465	-0.52229	-0.0002148	0.32026	0.00013171	411.25293651518757	56.403	0.61246	56.403	56.22	56.833	0	0	0	NaN	13.775	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	863060	+		42762	21672	35342	35365							0.07449543171071582
PKGPLGPVGPK	11	Unmodified	_PKGPLGPVGPK_					0	0	0			REV__ENSG00000123500|ENST00000651968|COL10A1	REV__ENSG00000123500|ENST00000651968|COL10A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2815551757812	2	523.821484	1045.62842	-0.23746	-0.00012439	-0.30121	-0.00015778	-0.53867	-0.00028217	523.8212664397171	71.771	0.41194	71.771	71.589	72	0					21	9	3	0	0	0	0.025912	1	6971	6971		16.717	0	1	788650	+		42763	18646	35343	35366	46232	46232					0.1074261261094307
PKGPVAKSIM	10	Unmodified	_PKGPVAKSIM_					0	0	0		tr|A0A553SGY8|A0A553SGY8_NIACIQuinoloxidasesubunit2OS=NialliacirculansOX=1397GN=qoxAPE=3SV=1	tr|A0A553SGY8|A0A553SGY8_NIACIQuinoloxidasesubunit2OS=NialliacirculansOX=1397GN=qoxAPE=3SV=1	tr|A0A553SGY8|A0A553SGY8_NIACIQuinoloxidasesubunit2OS=NialliacirculansOX=1397GN=qoxAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	514.2979736328125	2	514.30207	1026.58959	-4.6194	-0.0023758	-2.6771	-0.0013768	-7.2965	-0.0037526	514.3006222329757	152.39	0.9877	151.42	151.04	152.03	-0.97299					50	19	4	0	0	0	0.78463	1	12992	12992		20.947	1.587	1	117900			42764	33209	35344	35367	46233	46233					0.07735563984897453
PKGWEWIKGVK	11	Unmodified	_PKGWEWIKGVK_					0	0	0		nc|ENSG00000170954|Q09FC8-4|ZNF415	nc|ENSG00000170954|Q09FC8-4|ZNF415	nc|ENSG00000170954|Q09FC8-4|ZNF415	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.2667541503906	3	443.255557	1326.74484	-0.33556	-0.00014874	-0.56456	-0.00025024	-0.90012	-0.00039898	443.2555150272866	62.429	0.68502	58.971	58.765	59.45	-3.4577					22	13	2	0	0	0	0.026068	1	4389	4389		11.932	0	1	86373			42765	15178	35345	35368	46234	46234					0.0945393111080648
PKHFHQRVL	9	Unmodified	_PKHFHQRVL_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MULTI-SECPEP	OvCa9_classI_Rep3	3	580.8391723632812	2	581.335624	1160.6567	-2.3479	-0.0013649	-3.7363	-0.0021721	-6.0843	-0.003537	581.8349272983006	92.362	0.64147	90.338	90.18	90.822	-2.0241					26	13	3	0	0	0	0.027462	1	5881	5881		17.365	0	1	105640			42766	6864	35346	35369	46235	46235					0.082793553108786
PKHFSKLA	8	Unmodified	_PKHFSKLA_					0	0	0			REV__ENSG00000166169|ENST00000370162|POLL	REV__ENSG00000166169|ENST00000370162|POLL	MULTI-MSMS	OvCa9_classI_Rep2	2	464.2721862792969	2	464.27417	926.533787	-0.77313	-0.00035894	-3.8029	-0.0017656	-4.5761	-0.0021245	464.2722437694747	32.813	1.0946	30.104	29.877	30.972	-2.7097					56	21	4	0	0	0	0.64026	1	1119	1119		55.504	7.5886	1	453740	+		42767	21163	35347	35370	46236	46236					0.06758098859609163
PKHSYWLD	8	Unmodified	_PKHSYWLD_					0	0	0		ENSG00000164096|ENST00000504110|C4orf3;nc|nan|Q8WVX3-2|C4orf3	ENSG00000164096|ENST00000504110|C4orf3	ENSG00000164096|ENST00000504110|C4orf3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.7950439453125	2	523.258717	1044.50288	-0.84749	-0.00044346	0.90083	0.00047137	0.05334	2.7911E-05	523.2596797451351	39.899	0.90806	36.945	36.566	37.474	-2.9541					23	17	2	0	0	0	0.028476	1	1689	1689		31.955	1.4512	1	14424			42768	6408	35348	35371	46237	46237					-0.017590992453051513
PKIAKAPEPSH	11	Unmodified	_PKIAKAPEPSH_					0	0	0			REV__nc|ENSG00000291092|Q13401|PMS2P3	REV__nc|ENSG00000291092|Q13401|PMS2P3	MULTI-MSMS	OvCa9_classI_Rep2	2	587.8345947265625	2	587.83258	1173.65061	-1.4259	-0.00083822	4.1236	0.002424	2.6976	0.0015858	587.8349083775643	53.25	4.0724	50.436	49.985	54.058	-2.8139					184	81	4	0	0	0	0.61983	1	3574	3574		42.864	2.0861	1	898450	+		42769	25574	35349	35372	46238	46238					0.07072792288704477
PKIEETLR	8	Unmodified	_PKIEETLR_					0	0	0			REV__tr|A0A7D6ZP27|A0A7D6ZP27_9CLOTLipolyticproteinG-D-S-LfamilyOS=ClostridiumintestinaleOX=36845GN=HZF06_18645PE=4SV=1	REV__tr|A0A7D6ZP27|A0A7D6ZP27_9CLOTLipolyticproteinG-D-S-LfamilyOS=ClostridiumintestinaleOX=36845GN=HZF06_18645PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2857360839844	2	493.287474	984.560395	-0.70361	-0.00034708	0.29981	0.00014789	-0.40379	-0.00019919	493.28714964058696	59.838	0.58546	59.838	59.494	60.079	0					25	14	3	0	0	0	0.028476	1	5203	5203		21.96	0.25755	1	341180	+		42770	32128	35350	35373	46239	46239					0.06749742960289495
PKIFMKFLI	9	Unmodified	_PKIFMKFLI_					0	0	0		ENST00000451005.5_2_2:229983-234184:-|nuORF;ENST00000403712.6_1_2:229983-233125:-|nuORF;ENST00000481932.1_1_2:230955-234184:-|nuORF;ENST00000479739.6_1_2:230955-233125:-|nuORF	ENST00000451005.5_2_2:229983-234184:-|nuORF	ENST00000451005.5_2_2:229983-234184:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	568.8114624023438	2	568.848656	1135.68276	-0.16703	-9.5014E-05	-3.5822	-0.0020377	-3.7492	-0.0021327	568.8464097867915	123.48	2.6643	123.25	122.65	125.31	-0.23193					122	53	3	0	0	0	0.027462	1	12217	12217		37.159	0	1	46086			42771	11444	35351	35374	46240	46240					0.12034488438143853
PKIKRFCHE	9	Unmodified	_PKIKRFCHE_					0	0	0			REV__ENSG00000110448|ENST00000347785|CD5	REV__ENSG00000110448|ENST00000347785|CD5	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.31787109375	2	579.316043	1156.61753	-0.41226	-0.00023883	2.0112	0.0011651	1.5989	0.00092629	579.3171446209145	38.652	1.8901	35.725	35.453	37.343	-2.9264					115	37	4	0	0	0	0.55588	1	1552	1552		37.159	1.5408	1	1278600	+		42772	17986	35352	35375	46241	46241					0.04548886965017118
PKIPLLDRATK	11	Unmodified	_PKIPLLDRATK_					0	0	0			REV__ENSG00000176853|ENST00000334705|FAM91A1	REV__ENSG00000176853|ENST00000334705|FAM91A1	MULTI-MSMS	OvCa9_classI_Rep2	2	626.3887939453125	2	626.392805	1250.77106	-5.6586	-0.0035445	-3.473	-0.0021755	-9.1316	-0.00572	626.8920656002647	163.54	1.1058	163.31	162.97	164.08	-0.22697					56	36	2	0	0	0	0.72516	1	16712	16712		13.454	0.49486	1	65883	+		42773	21972	35353	35376	46242	46242					0.1557020028228635
PKIRKDILD	9	Unmodified	_PKIRKDILD_					0	0	0		ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	ENSG00000123607|ENST00000243344|TTC21B	MULTI-SECPEP	OvCa9_classI_Rep2	2	549.8316040039062	2	549.337498	1096.66044	0.92687	0.00050917	-1.1086	-0.00060899	-0.18172	-9.9825E-05	549.3369612296161	71.264	1.153	68.756	68.489	69.642	-2.5072					39	21	4	0	0	0	0.027462	1	5796	5796		16.473	0	1	222490			42774	3608	35354	35377	46243	46243					0.1159798029407284
PKITLWPK	8	Unmodified	_PKITLWPK_					0	0	0		ENST00000474306.1_1_9:114691918-114691951:+|nuORF	ENST00000474306.1_1_9:114691918-114691951:+|nuORF	ENST00000474306.1_1_9:114691918-114691951:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.2733154296875	2	491.807845	981.601138	0.61089	0.00030044	-4.2823	-0.002106	-3.6714	-0.0018056	491.8054226867787	38.394	1.289	35.468	35.106	36.395	-2.9264					63	25	4	0	0	0	0.028476	1	1483	1483		37.159	0	1	105730			42775	12430	35355	35378	46244	46244					0.10960129070565472
PKKEGQGS	8	Unmodified	_PKKEGQGS_					0	0	0			REV__ZBTB20|p.E579Q|1|0.06|ENSG00000181722|chr3:114350343-114350343|C/G|missense_variant	REV__ZBTB20|p.E579Q|1|0.06|ENSG00000181722|chr3:114350343-114350343|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	415.721923828125	2	415.721967	829.429381	-0.9299	-0.00038658	0.71722	0.00029816	-0.21268	-8.8416E-05	415.7221307706575	120.37	1.5373	119.02	118.72	120.26	-1.3444					61	29	4	0	0	0	0.75661	1	11304	11304		19.36	0	1	298300	+		42776	22246	35356	35379	46245	46245					0.007843523122460283
PKKFNEEEASQ	11	Unmodified	_PKKFNEEEASQ_					0	0	0			REV__ENSG00000123562|ENST00000441076|MORF4L2	REV__ENSG00000123562|ENST00000441076|MORF4L2	MULTI-SECPEP	OvCa99_classI_Rep5	1	435.245361328125	3	436.213975	1305.62009	0.35492	0.00015482	1.1248	0.00049063	1.4797	0.00064545	436.21281684928294	35.933	0.78317	35.933	35.614	36.397	0					23	16	3	0	0	0	0.025568	1	1855	1855		33.039	1.9713	1	22165	+		42777	18648	35357	35380	46246	46246					-0.02049030886996661
PKKFNEEEASQ	11	Unmodified	_PKKFNEEEASQ_					0	0	0			REV__ENSG00000123562|ENST00000441076|MORF4L2	REV__ENSG00000123562|ENST00000441076|MORF4L2	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		3	436.213975	1305.62009	-0.47635	-0.00020779	1.1614	0.0005066	0.685	0.00029881	436.21434110685567	38.984	1.4877	36.274	35.964	37.452	-2.7097	0.11277	0.0011366	NaN	33.039	73	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131680	+		42778	18648	35357	35380							-0.02049030886996661
PKKGAAEMES	10	Unmodified	_PKKGAAEMES_					0	0	0			REV__ENST00000472019.5_1_2:220147533-220150716:+|nuORF	REV__ENST00000472019.5_1_2:220147533-220150716:+|nuORF	MSMS	OvCa99_classI_Rep5	1	524.2633056640625	2	524.260599	1046.50665	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.303	1	20.303	19.803	20.803	0								0	0	0	0.14049	1	18	18		23.042	9.2672	1		+		42779	19336	35358	35381	46247	46247					-0.014747975337513708
PKKGVKPKL	9	Unmodified	_PKKGVKPKL_					0	0	0		ENSG00000164309|ENST00000446378|CMYA5;CMYA5|p.I1537Hfs*7|1|0.1|ENSG00000164309|chr5:79733373-79733374|-/C|frameshift_variant;CMYA5|p.L2315Tfs*2|1|0.05|ENSG00000164309|chr5:79735707-79735708|-/A|frameshift_variant	ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	MULTI-MSMS	OvCa9_classI_Rep2	2	497.84234619140625	2	497.84222	993.669886	2.0293	0.0010103	-2.1219	-0.0010564	-0.092576	-4.6088E-05	497.84089173249737	27.926	0.56301	25.217	25.075	25.638	-2.7097					21	11	3	0	0	0	0.71696	1	533	533		12.207	0.69583	1	46225			42780	6445	35359	35382	46248	46248					0.17279793370266816
PKKKKKRF	8	Unmodified	_PKKKKKRF_					0	0	0		ENSG00000277443|ENST00000612661|MARCKS	ENSG00000277443|ENST00000612661|MARCKS	ENSG00000277443|ENST00000612661|MARCKS	MSMS	OvCa9_classI_Rep4_	4	530.359130859375	2	530.361111	1058.70767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.609	1	19.271	18.771	19.771	-1.3386								0	0	0	0.30129	1	71	71		8.8223	0.59103	1				42781	9584	35360	35383	46249	46249					0.18066304355738794
PKKKRWEA	8	Unmodified	_PKKKRWEA_					0	0	0		ENSG00000167615|ENST00000326764|LENG8;LENG8|p.D442*|1|0.18|ENSG00000167615|chr19:54456343-54456344|-/T|frameshift_variant;nc|ENSG00000167615|Q96PV6-1|LENG8	ENSG00000167615|ENST00000326764|LENG8	ENSG00000167615|ENST00000326764|LENG8	MULTI-MSMS	OvCa9_classI_Rep2	2	521.8126831054688	2	521.811451	1041.60835	-0.83564	-0.00043605	3.6163	0.001887	2.7806	0.001451	521.8134554363941	67.923	3.082	65.262	64.842	67.924	-2.661					124	61	3	0	0	0	0.7224	1	5373	5373		38.806	0.99462	1	4500900			42782	6815	35361	35384	46250	46250					0.08920861671003877
PKKLKKPAKP	10	Unmodified	_PKKLKKPAKP_					0	0	0		ENST00000441488.6_1_11:67925157-67938746:-|nuORF;ENSG00000110066|ENST00000304363|KMT5B	ENST00000441488.6_1_11:67925157-67938746:-|nuORF	ENST00000441488.6_1_11:67925157-67938746:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.3268432617188	2	567.889701	1133.76485	-0.86048	-0.00048866	4.2136	0.0023929	3.3531	0.0019042	568.3934246373076	34.287	0.28333	34.287	34.161	34.444	0					7	5	2	0	0	0	0.026994	1	1651	1651		32.812	6.1195	1	28024			42783	2752	35362	35385	46251	46251					0.20331726841459385
PKKNLKEIV	9	Unmodified	_PKKNLKEIV_					0	0	0			REV__tr|A0A7D6VVS9|A0A7D6VVS9_9CLOTYdcFfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01630PE=4SV=1	REV__tr|A0A7D6VVS9|A0A7D6VVS9_9CLOTYdcFfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01630PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.8252563476562	2	534.842416	1067.67028	-1.9065	-0.0010197	3.1898	0.001706	1.2833	0.00068635	534.8439833188387	88.787	0.73787	86.185	86.085	86.823	-2.6027					20	14	2	0	0	0	0.027462	1	7664	7664		21.96	0	1	38255	+		42784	31735	35363	35386	46252	46252					0.1391516829946795
PKKPKLPLL	9	Unmodified	_PKKPKLPLL_					0	0	0		ENST00000345097.8_1_14:89628377-89628602:-|nuORF	ENST00000345097.8_1_14:89628377-89628602:-|nuORF	ENST00000345097.8_1_14:89628377-89628602:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	517.359619140625	2	517.360245	1032.70594	-0.63272	-0.00032734	0.17774	9.1954E-05	-0.45498	-0.00023539	517.3601946717101	136.63	2.1947	135.53	135.15	137.35	-1.1023					115	44	4	0	0	0	0.59983	1	11139	11139		31.955	6.5047	1	468020			42785	10620	35364	35387	46253	46253					0.19089250547131087
PKKPPAKDP	9	Unmodified	_PKKPPAKDP_					0	0	0		nc|ENSG00000065609|O60641-3|SNAP91;nc|ENSG00000065609|O60641-4|SNAP91;ENSG00000065609|ENST00000369694|SNAP91	nc|ENSG00000065609|O60641-3|SNAP91	nc|ENSG00000065609|O60641-3|SNAP91	MULTI-MSMS	OvCa9_classI_Rep2	2	489.291748046875	2	489.292559	976.570566	-0.29489	-0.00014429	-0.11707	-5.7281E-05	-0.41196	-0.00020157	489.2924862097453	60.206	1.6231	57.436	56.83	58.453	-2.7702					62	30	3	0	0	0	0.50149	1	4446	4446		42.396	5.237	1	524080			42786	1333	35365	35388	46254	46254					0.08134350685509162
PKKRADTSR	9	Unmodified	_PKKRADTSR_					0	0	0		ENSG00000215115|ENST00000535490|CXorf49;ENSG00000215113|ENST00000542739|CXorf49B	ENSG00000215115|ENST00000535490|CXorf49	ENSG00000215115|ENST00000535490|CXorf49	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2763671875	2	529.806897	1057.59924	-0.5274	-0.00027942	2.9814	0.0015796	2.454	0.0013002	530.30946801758	61.395	0.17112	61.395	61.245	61.416	0					5	3	2	0	0	0	0.027462	1	5398	5398		27.882	3.6795	1	45329			42787	9201	35366	35389	46255	46255					0.07274468314653859
PKKRKIKQIL	10	Unmodified	_PKKRKIKQIL_					0	0	0			REV__ENST00000199940.10_2_2:210372350-210489846:+|nuORF	REV__ENST00000199940.10_2_2:210372350-210489846:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	417.90643310546875	3	417.958963	1250.85506	-0.76898	-0.0003214	-4.1808	-0.0017474	-4.9497	-0.0020688	417.95752032019084	51.423	0.1503	48.249	48.123	48.274	-3.1734					4	2	2	0	0	0	0.027429	1	3007	3007		7.0187	2.6799	1	6374.2	+		42788	23696	35367	35390	46256	46256					0.23966776169868353
PKKSELPIF	9	Unmodified	_PKKSELPIF_					0	0	0			REV__nc|ENSG00000064651|P55011-3|SLC12A2	REV__nc|ENSG00000064651|P55011-3|SLC12A2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.8323364257812	2	529.815867	1057.61718	-0.67549	-0.00035789	-3.5253	-0.0018678	-4.2008	-0.0022257	529.8139268612642	83.69	1.1874	81.027	80.681	81.868	-2.6629					48	24	3	0	0	0	0.027462	1	7011	7011		27.882	5.9224	1	306350	+		42789	16773	35368	35391	46257	46257					0.09067790516814966
PKKSFSHVAEL	11	Unmodified	_PKKSFSHVAEL_					0	0	0		ENSG00000187741|ENST00000389301|FANCA;ENST00000562424.1_1_16:89805011-89806109:-|nuORF;ENST00000568369.5_1_16:89805011-89805599:-|nuORF	ENSG00000187741|ENST00000389301|FANCA	ENSG00000187741|ENST00000389301|FANCA	MULTI-MSMS	OvCa9_classI_Rep4_	4	621.8436889648438	2	621.845687	1241.67682	-0.84618	-0.00052619	-2.72	-0.0016914	-3.5662	-0.0022176	621.8439210605059	40.717	1.4053	37.763	37.527	38.932	-2.9541					78	26	4	0	0	0	0.60035	1	1767	1767		28.081	0	1	581400			42790	8427	35369	35392	46258	46258					0.06565061460196375
PKKSKEKSAS	10	Unmodified	_PKKSKEKSAS_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3161010742188	2	545.316763	1088.61897	-2.8527	-0.0015556	2.7212	0.0014839	-0.13151	-7.1714E-05	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.72142	1	11771	11771		28.081	2.5074	1	337600	+		42791	18424	35370	35393	46259	46259					0.07820799534761136
PKKTSSSL	8	Unmodified	_PKKTSSSL_					0	0	0		ENST00000309863.10_1_2:109065689-109067532:+|nuORF	ENST00000309863.10_1_2:109065689-109067532:+|nuORF	ENST00000309863.10_1_2:109065689-109067532:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	424.73590087890625	2	424.247818	846.481082	0.18508	7.8521E-05	1.1212	0.00047567	1.3063	0.00055419	424.24820554314846	59.473	0.83418	56.081	55.854	56.689	-3.392					34	16	3	0	0	0	0.028476	1	3982	3982		18.324	4.5491	1	73037			42792	10279	35371	35394	46260	46260					0.051700960061339174
PKKTSSSL	8	Unmodified	_PKKTSSSL_					0	0	0		ENST00000309863.10_1_2:109065689-109067532:+|nuORF	ENST00000309863.10_1_2:109065689-109067532:+|nuORF	ENST00000309863.10_1_2:109065689-109067532:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	424.247818	846.481082	-0.40015	-0.00016976	2.3681	0.0010046	1.9679	0.00083488	424.24860740109904	58.734	1.0219	55.954	55.588	56.61	-2.7801	-0.063277	0.00036079	NaN	18.324	34	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52417			42793	10279	35371	35394							0.051700960061339174
PKKVNTTKF	9	Unmodified	_PKKVNTTKF_					0	0	0			REV__ENSG00000177084|ENST00000320574|POLE	REV__ENSG00000177084|ENST00000320574|POLE	MULTI-MSMS	OvCa9_classI_Rep3	3	531.81689453125	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.65371	1	11419	11419		25.574	2.5316	1	178650	+		42794	21984	35372	35395	46261	46261					0.09498308748334239
PKLGKAKIIT	10	Unmodified	_PKLGKAKIIT_					0	0	0			REV__ENST00000549913.6_1_12:113307544-113334582:+|nuORF	REV__ENST00000549913.6_1_12:113307544-113334582:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.8485107421875	2	534.860609	1067.70667	-1.2089	-0.00064658	0.32648	0.00017462	-0.8824	-0.00047196	534.8605389282145	46.033	1.0443	43.324	43.048	44.093	-2.7097					37	20	4	0	0	0	0.026665	1	2751	2751		42.396	16.946	1	114850	+		42795	17201	35373	35396	46262	46262					0.1755204519615745
PKLGPRPVVTP	11	Unmodified	_PKLGPRPVVTP_					0	0	0			REV__ENSG00000136158|ENST00000377104|SPRY2	REV__ENSG00000136158|ENST00000377104|SPRY2	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.8845825195312	2	580.861141	1159.70773	-0.71751	-0.00041678	4.3983	0.0025548	3.6808	0.002138	580.8634672745052	41.238	0.13558	41.238	41.149	41.285	0					4	2	2	0	0	0	0.025746	1	2554	2554		25.574	3.6142	1	10157	+		42796	19364	35374	35397	46263	46263					0.13426259565085275
PKLIVVVR	8	Unmodified	_PKLIVVVR_					0	0	0		HS3ST3A1|p.T236P|1|0.2|ENSG00000153976|chr17:13496712-13496712|T/G|missense_variant	HS3ST3A1|p.T236P|1|0.2|ENSG00000153976|chr17:13496712-13496712|T/G|missense_variant	HS3ST3A1|p.T236P|1|0.2|ENSG00000153976|chr17:13496712-13496712|T/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	462.323974609375	2	462.323663	922.632772	-1.0676	-0.00049358	0.69598	0.00032177	-0.37164	-0.00017182	462.3238381907604	91.619	1.0389	89.595	89.231	90.27	-2.0241					55	20	4	0	0	0	0.75241	1	5760	5760		25.45	0	1	405380			42797	14489	35375	35398	46264	46264					0.16836121824508155
PKLKLLNPHNQ	11	Unmodified	_PKLKLLNPHNQ_					0	0	0			REV__ENST00000487196.1_1_10:5800911-5803598:+|nuORF	REV__ENST00000487196.1_1_10:5800911-5803598:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	434.2559814453125	3	434.594461	1300.76155	-1.7911	-0.00077839	-3.9375	-0.0017112	-5.7285	-0.0024896	434.5927845057318	37.694	0.58902	34.985	34.781	35.37	-2.7097					15	11	2	0	0	0	0.025722	1	1750	1750		34.087	3.5176	1	18430	+		42798	26599	35376	35399	46265	46265					0.12320431996795378
PKLKLLNPHNQ	11	Unmodified	_PKLKLLNPHNQ_					0	0	0			REV__ENST00000487196.1_1_10:5800911-5803598:+|nuORF	REV__ENST00000487196.1_1_10:5800911-5803598:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		3	434.594461	1300.76155	0.12228	5.3144E-05	1.4186	0.00061653	1.5409	0.00066968	434.5950616077604	35.317	0.32926	35.317	35.1	35.429	0	0.16626	0.0042273	NaN	34.087	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47458	+		42799	26599	35376	35399							0.12320431996795378
PKLKLRKLELR	11	Unmodified	_PKLKLRKLELR_					0	0	0		nc|ENSG00000248546|O43423|ANP32CP	nc|ENSG00000248546|O43423|ANP32CP	nc|ENSG00000248546|O43423|ANP32CP	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.72760009765625	3	465.317039	1392.92929	-0.050323	-2.3416E-05	-2.2246	-0.0010352	-2.2749	-0.0010586	465.31585722791294	30.476	0.34716	30.476	30.285	30.632	0					11	6	2	0	0	0	0.02653	1	1160	1160		1.4188	0	1	34679			42800	15346	35377	35400	46266	46266					0.24854119261385677
PKLLVMAYPVR	11	Unmodified	_PKLLVMAYPVR_					0	0	0		tr|A0A7D6ZW07|A0A7D6ZW07_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17125PE=4SV=1	tr|A0A7D6ZW07|A0A7D6ZW07_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17125PE=4SV=1	tr|A0A7D6ZW07|A0A7D6ZW07_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17125PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	429.2296142578125	3	429.593293	1285.75805	-0.48985	-0.00021044	-2.256	-0.00096918	-2.7459	-0.0011796	429.59225447851014	28.713	0.54844	28.713	28.489	29.037	0					17	10	2	0	0	0	0.026113	1	988	988		18.531	0	1	68649			42801	35822	35378	35401	46267	46267					0.12660045898542194
PKLNIRLD	8	Unmodified	_PKLNIRLD_					0	0	0			REV__nc|ENSG00000129003|Q709C8-4|VPS13C	REV__nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.8276672363281	2	484.798009	967.581465	0.0015548	7.5375E-07	-0.60846	-0.00029498	-0.60691	-0.00029423	484.7975484063818	78.25	0.62281	75.433	75.165	75.788	-2.8165					17	12	2	0	0	0	0.028476	1	6281	6281		30.504	0	1	55338	+		42802	18881	35379	35402	46268	46268					0.09637753059791976
PKLPLRYP	8	Unmodified	_PKLPLRYP_					0	0	0		nc|ENSG00000126545|P47710-4|CSN1S1;nc|ENSG00000126545|P47710-3|CSN1S1;nc|ENSG00000126545|P47710-2|CSN1S1;ENSG00000126545|ENST00000246891|CSN1S1	nc|ENSG00000126545|P47710-4|CSN1S1	nc|ENSG00000126545|P47710-4|CSN1S1	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.28631591796875	2	492.30547	982.596387	-0.231	-0.00011372	4.0555	0.0019966	3.8245	0.0018828	492.30899735621665	48.815	0.59782	46.055	45.629	46.226	-2.7603					18	11	3	0	0	0	0.028476	1	3061	3061		28.254	11.781	1	11482			42803	3787	35380	35403	46269	46269					0.10439244927795244
PKLQLAKDI	9	Unmodified	_PKLQLAKDI_					0	0	0			REV__nc|ENSG00000133687|Q8IUR5-1|TMTC1	REV__nc|ENSG00000133687|Q8IUR5-1|TMTC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.3048706054688	2	513.321317	1024.62808	-1.1155	-0.00057259	0.72797	0.00037368	-0.3875	-0.00019891	513.3214636414175	120.46	1.1313	119.11	118.77	119.9	-1.3444					39	21	3	0	0	0	0.027462	1	11292	11292		30.318	0	1	75480	+		42804	19152	35381	35404	46270	46270					0.11675192891084407
PKLQPKQPE	9	Unmodified	_PKLQPKQPE_					0	0	0			REV__nc|ENSG00000104067|Q07157-2|TJP1	REV__nc|ENSG00000104067|Q07157-2|TJP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.2626953125	2	532.808574	1063.60259	0.34365	0.0001831	-0.89083	-0.00047464	-0.54718	-0.00029154	532.8081025402515	71.91	1.9268	71.91	71.349	73.276	0					117	47	3	0	0	0	0.027462	1	7128	7128		27.882	0	1	27992000	+		42805	17643	35382	35405	46271	46271					0.07333718368658992
PKLQRQKL	8	Unmodified	_PKLQRQKL_					0	0	0		nc|ENSG00000258436|Q7Z5J4-4|RAI1;nc|ENSG00000258436|Q7Z5J4-3|RAI1;nc|ENSG00000258436|Q7Z5J4-2|RAI1;ENSG00000108557|ENST00000353383|RAI1	nc|ENSG00000258436|Q7Z5J4-4|RAI1	nc|ENSG00000258436|Q7Z5J4-4|RAI1	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.8257141113281	2	505.827101	1009.63965	0.56325	0.00028491	-0.65799	-0.00033283	-0.094744	-4.7924E-05	505.8266223982482	36.013	0.94845	33.164	32.889	33.838	-2.849					40	18	3	0	0	0	0.75241	1	1216	1216		25.45	3.4903	1	132040			42806	15359	35383	35406	46272	46272					0.13521434705069169
PKLRPSFV	8	Unmodified	_PKLRPSFV_					0	0	0		nc|ENSG00000070759|Q96S53-3|TESK2;nc|ENSG00000070759|Q96S53-2|TESK2;ENSG00000070759|ENST00000372086|TESK2	nc|ENSG00000070759|Q96S53-3|TESK2	nc|ENSG00000070759|Q96S53-3|TESK2	MULTI-MSMS	OvCa9_classI_Rep2	2	472.2878112792969	2	472.28982	942.565087	-3.3722	-0.0015927	-0.90359	-0.00042676	-4.2758	-0.0020194	472.2892568382278	150.85	1.4757	150.62	150.22	151.7	-0.22697					85	29	4	0	0	0	0.75426	1	15343	15343		18.324	1.8513	1	396600			42807	1434	35384	35407	46273	46273					0.09150671893701201
PKLSHLGGIL	10	Unmodified	_PKLSHLGGIL_					0	0	0		L1PB4_dup1466|chr4:19614553-19617282:+|1.566952962030771|0.0066926762288261|7.87|427.0|139|2|anti-sense	L1PB4_dup1466|chr4:19614553-19617282:+|1.566952962030771|0.0066926762288261|7.87|427.0|139|2|anti-sense	L1PB4_dup1466|chr4:19614553-19617282:+|1.566952962030771|0.0066926762288261|7.87|427.0|139|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.8184814453125	2	517.821484	1033.62842	-1.9356	-0.0010023	-2.1747	-0.0011261	-4.1103	-0.0021284	517.8202333199824	147.34	1.4932	145.91	145.48	146.98	-1.435					65	29	3	0	0	0	0.73378	1	14492	14492		26.693	1.1189	1	151000			42808	14787	35385	35408	46274	46274					0.1129461261095912
PKLSKAMRCAE	11	Unmodified	_PKLSKAMRCAE_					0	0	0			REV__ENST00000346693.8_1_X:149935499-149935694:-|nuORF	REV__ENST00000346693.8_1_X:149935499-149935694:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.8996887207031	3	411.886259	1232.63695	0.57347	0.0002362	-2.6026	-0.001072	-2.0291	-0.00083577	411.88505939739565	41.353	0.26788	41.353	41.195	41.462	0					8	5	2	0	0	0	0.025726	1	2566	2566		30.139	0.58839	1	169090	+		42809	24700	35386	35409	46275	46275					0.029934751936252724
PKLSKPMPFQ	10	Unmodified	_PKLSKPMPFQ_					0	0	0			REV__ENSG00000152785|ENST00000282701|BMP3	REV__ENSG00000152785|ENST00000282701|BMP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.8106689453125	2	586.828452	1171.64235	0.089852	5.2728E-05	3.0259	0.0017757	3.1158	0.0018284	586.8299442401342	57.808	0.46095	57.808	57.566	58.027	0					21	10	3	0	0	0	0.026653	1	4864	4864		41.427	6.2746	1	316060	+		42810	20305	35387	35410	46276	46276					0.06339522047733226
PKLSKPMPFQ	10	Unmodified	_PKLSKPMPFQ_					0	0	0			REV__ENSG00000152785|ENST00000282701|BMP3	REV__ENSG00000152785|ENST00000282701|BMP3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	586.828452	1171.64235	-1.1249	-0.00066011	4.7075	0.0027625	3.5826	0.0021024	586.8307351879955	60.583	2.0941	57.813	56.882	58.976	-2.7702	-0.053971	0.0012871	NaN	41.427	107	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63730	+		42811	20305	35387	35410							0.06339522047733226
PKLSKPMPFQ	10	Unmodified	_PKLSKPMPFQ_					0	0	0			REV__ENSG00000152785|ENST00000282701|BMP3	REV__ENSG00000152785|ENST00000282701|BMP3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	586.828452	1171.64235	-0.22084	-0.0001296	2.5897	0.0015197	2.3689	0.0013901	586.829904133394	61.43	0.80577	57.981	57.725	58.531	-3.4492	0.11367	-0.0011984	NaN	41.427	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158730	+		42812	20305	35387	35410							0.06339522047733226
PKLWSLAEI	9	Unmodified	_PKLWSLAEI_					0	0	0		ENSG00000170561|ENST00000302057|IRX2;nc|ENSG00000176842|P78411-3|IRX5;ENST00000558597.1_2_16:54966274-54967782:+|nuORF;nc|ENSG00000176842|P78411-2|IRX5;ENSG00000176842|ENST00000394636|IRX5	ENSG00000170561|ENST00000302057|IRX2	ENSG00000170561|ENST00000302057|IRX2	MULTI-MSMS	OvCa9_classI_Rep3	3	528.8065795898438	2	528.808042	1055.60153	-0.9416	-0.00049792	-3.5227	-0.0018629	-4.4643	-0.0023608	528.8061375588696	87.696	1.6773	85.519	84.884	86.561	-2.1768					72	32	4	0	0	0	0.24951	1	5286	5286		68.787	8.6686	1	611830			42813	7117	35388	35411	46277	46277					0.07595503999755238
PKLWSLAEI	9	Unmodified	_PKLWSLAEI_					0	0	0		ENSG00000170561|ENST00000302057|IRX2;nc|ENSG00000176842|P78411-3|IRX5;ENST00000558597.1_2_16:54966274-54967782:+|nuORF;nc|ENSG00000176842|P78411-2|IRX5;ENSG00000176842|ENST00000394636|IRX5	ENSG00000170561|ENST00000302057|IRX2	ENSG00000170561|ENST00000302057|IRX2	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.806396484375	2	528.808042	1055.60153	-3.3346	-0.0017634	-1.9803	-0.0010472	-5.3149	-0.0028106	528.8069570782636	88.12	1.4508	85.517	85.129	86.58	-2.6027					60	28	3	0	0	0	0.48324	1	7509	7509		44.117	4.864	1	510640			42814	7117	35388	35411	46278	46278					0.07595503999755238
PKLYEEPVQ	9	Unmodified	_PKLYEEPVQ_					0	0	0			REV__nc|ENSG00000113273|P15848-2|ARSB	REV__nc|ENSG00000113273|P15848-2|ARSB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.83154296875	2	551.792589	1101.57063	0.69026	0.00038088	4.4556	0.0024585	5.1458	0.0028394	551.794803466361	33.308	0.59496	30.612	30.402	30.997	-2.6954					19	11	2	0	0	0	0.027462	1	859	859		21.96	0	1	13382	+		42815	18143	35389	35412	46279	46279					0.02390305894869016
PKMEQLQKL	9	Unmodified	_PKMEQLQKL_					0	0	0			REV__ENSG00000188994|ENST00000369577|ZNF292	REV__ENSG00000188994|ENST00000369577|ZNF292	MULTI-MSMS	OvCa99_classI_Rep5	1	557.82373046875	2	557.818084	1113.62162	-0.38776	-0.0002163	3.4955	0.0019499	3.1078	0.0017336	557.820297901248	34.982	1.167	34.982	34.772	35.939	0					76	24	5	0	0	0	0.46356	1	1720	1720		45.972	0	1	4576700	+		42816	22753	35390	35413	46280	46280					0.06934931668070021
PKNFKIHT	8	Unmodified	_PKNFKIHT_					0	0	0			REV__ENST00000370768.6_1_1:78430410-78430604:-|nuORF	REV__ENST00000370768.6_1_1:78430410-78430604:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.8180236816406	2	492.784902	983.55525	-0.11583	-5.708E-05	-0.84465	-0.00041623	-0.96048	-0.00047331	492.7842232597302	31.207	0.48185	31.207	31.027	31.509	0					12	9	2	0	0	0	0.028476	1	1242	1242		25.45	0	1	38093	+		42817	24969	35391	35414	46281	46281					0.06281483888312778
PKNRTHVKLI	10	Unmodified	_PKNRTHVKLI_					0	0	0			REV__tr|A0A7D7A305|A0A7D7A305_9CLOTATP-dependentzincmetalloproteaseFtsHOS=ClostridiumintestinaleOX=36845GN=ftsHPE=3SV=1	REV__tr|A0A7D7A305|A0A7D7A305_9CLOTATP-dependentzincmetalloproteaseFtsHOS=ClostridiumintestinaleOX=36845GN=ftsHPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	403.5805358886719	3	402.587418	1204.74043	2.3316	0.00093866	-0.3433	-0.00013821	1.9883	0.00080045	402.5872993781392	64.436	0.65508	61.443	61.344	61.999	-2.9933					20	12	2	0	0	0	0.027268	1	2490	2490		17.468	0	1	27911	+		42818	32563	35392	35415	46282	46282					0.146244666879511
PKNVIKEPIRS	11	Unmodified	_PKNVIKEPIRS_					0	0	0			REV__tr|A0A553SSD2|A0A553SSD2_NIACIHDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02830PE=4SV=1	REV__tr|A0A553SSD2|A0A553SSD2_NIACIHDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02830PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	640.8897094726562	2	640.887887	1279.76122	-0.17161	-0.00010998	3.4108	0.002186	3.2392	0.002076	640.8899625944715	132.12	1.093	131	130.64	131.73	-1.1249					68	21	4	0	0	0	0.71048	1	10534	10534		26.063	0.48933	1	271940	+		42819	30824	35393	35416	46283	46283					0.13253012276936715
PKPAKECRGV	10	Unmodified	_PKPAKECRGV_					0	0	0			REV__ENST00000490839.1_1_7:150814483-150814980:+|nuORF	REV__ENST00000490839.1_1_7:150814483-150814980:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.7990112304688	2	542.800226	1083.5859	-0.63983	-0.0003473	-3.3943	-0.0018424	-4.0342	-0.0021897	542.7982386331407	74.987	2.0655	71.756	70.723	72.788	-3.2308					84	42	3	0	0	0	0.58067	1	5889	5889		44.377	1.5129	1	502430	+		42820	26661	35394	35417	46284	46284					0.047448942110577264
PKPAKECRGV	10	Unmodified	_PKPAKECRGV_					0	0	0			REV__ENST00000490839.1_1_7:150814483-150814980:+|nuORF	REV__ENST00000490839.1_1_7:150814483-150814980:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.800226	1083.5859	-0.9183	-0.00049845	-2.9552	-0.0016041	-3.8735	-0.0021025	542.7985136662405	73.986	1.6261	72.015	71.221	72.847	-1.9711	0.12964	0.00020786	NaN	44.377	64	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120060	+		42821	26661	35394	35417							0.047448942110577264
PKPALPPKATL	11	Unmodified	_PKPALPPKATL_					0	0	0			REV__ENSG00000169221|ENST00000409939|TBC1D10B	REV__ENSG00000169221|ENST00000409939|TBC1D10B	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.8269653320312	2	566.858067	1131.70158	0.77527	0.00043947	-0.13948	-7.9065E-05	0.63579	0.0003604	566.85782109004	74.285	0.74111	74.285	74.02	74.761	0					32	18	3	0	0	0	0.02596	1	7406	7406		13.454	3.7484	1	416930	+		42822	21445	35395	35418	46285	46285					0.1409974133355263
PKPCCGACS	9	Unmodified	_PKPCCGACS_					0	0	0			REV__NOD1|p.F591Dfs*24|1|0.19|ENSG00000106100|chr7:30451646-30451647|-/TC|frameshift_variant	REV__NOD1|p.F591Dfs*24|1|0.19|ENSG00000106100|chr7:30451646-30451647|-/TC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1711120605469	2	433.171884	864.329215	1.9505	0.00084491	-1.8497	-0.00080124	0.10081	4.3668E-05	433.17100760562903	63.152	4.2639	60.118	58.202	62.466	-3.0339					141	92	2	0	0	0	0.67509	1	2328	2328		23.042	1.0826	1	38128	+		42823	29257	35396	35419	46286	46286					-0.1083766760908702
PKPDLVIASP	10	Unmodified	_PKPDLVIASP_					0	0	0		nc|ENSG00000141497|Q9H091-3|ZMYND15	nc|ENSG00000141497|Q9H091-3|ZMYND15	nc|ENSG00000141497|Q9H091-3|ZMYND15	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.7656860351562	2	518.8055	1035.59645	0.62756	0.00032558	-1.5494	-0.00080384	-0.92185	-0.00047826	518.8045547794627	154.54	0.55612	154.54	154.27	154.83	0					18	10	2	0	0	0	0.026994	1	18094	18094		19.104	0	1	113100			42824	15063	35397	35420	46287	46287					0.08007200137149084
PKPELTLRKE	10	Unmodified	_PKPELTLRKE_					0	0	0			REV__nc|ENSG00000128881|Q6IQ55-3|TTBK2	REV__nc|ENSG00000128881|Q6IQ55-3|TTBK2	MULTI-MSMS	OvCa9_classI_Rep4_	4	404.2440185546875	3	404.243317	1209.70812	1.5188	0.00061396	-3.4188	-0.001382	-1.9	-0.00076806	404.241836865177	21.149	1.0267	19.81	19.548	20.574	-1.3386					42	20	3	0	0	0	0.6898	1	133	133		31.634	3.5528	1	131090	+		42825	18874	35398	35421	46288	46288					0.11165634494273036
PKPFAEYEVI	10	Unmodified	_PKPFAEYEVI_					0	0	0			REV__nc|ENSG00000157404|P10721-2|KIT	REV__nc|ENSG00000157404|P10721-2|KIT	MULTI-SECPEP	OvCa9_classI_Rep4_	4	596.330322265625	2	596.816064	1191.61758	-0.60691	-0.00036221	-3.2378	-0.0019324	-3.8447	-0.0022946	596.8143284214259	73.2	1.0609	69.804	69.543	70.604	-3.3961					39	21	3	0	0	0	0.027021	1	5683	5683		21.96	3.6978	1	74662	+		42826	20519	35399	35422	46289	46289					0.02943165446004059
PKPGVPQT	8	Unmodified	_PKPGVPQT_					0	0	0		nc|ENSG00000144218|P51826-2|AFF3;ENSG00000144218|ENST00000672756|AFF3;ENST00000498090.1_1_2:100623057-100623988:-|nuORF	nc|ENSG00000144218|P51826-2|AFF3	nc|ENSG00000144218|P51826-2|AFF3	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.5426330566406	2	412.237253	822.459953	0.52831	0.00021779	0.12497	5.1517E-05	0.65328	0.0002693	412.23722355138796	61.301	0.38692	61.301	61.071	61.458	0					13	8	2	0	0	0	0.028476	1	5383	5383		23.042	5.6775	1	155830			42827	5134	35400	35423	46290	46290					0.04162130697284283
PKPHLYITI	9	Unmodified	_PKPHLYITI_					0	0	0		L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|9|1|sense	L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|9|1|sense	L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|9|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.7724609375	2	541.32386	1080.63317	-0.73916	-0.00040012	-3.0365	-0.0016437	-3.7756	-0.0020438	541.3221178738775	98.528	1.1855	96.149	95.921	97.106	-2.3786					34	22	2	0	0	0	0.027462	1	8805	8805		53.351	18.199	1	101470			42828	14714	35401	35424	46291	46291					0.09607496753687883
PKPLIRPQP	9	Unmodified	_PKPLIRPQP_					0	0	0			REV__HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|82|3|sense	REV__HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|82|3|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.3046875	2	523.329476	1044.6444	-0.2971	-0.00015548	-0.43448	-0.00022738	-0.73159	-0.00038286	523.3291370469882	47.249	1.5851	44.54	43.943	45.529	-2.7097					70	31	4	0	0	0	0.027462	1	2947	2947		10.866	0	1	182130	+		42829	16093	35402	35425	46292	46292					0.12386318847848088
PKPLWVVL	8	Unmodified	_PKPLWVVL_					0	0	0		ENST00000493792.1_1_2:3482527-3483229:+|nuORF	ENST00000493792.1_1_2:3482527-3483229:+|nuORF	ENST00000493792.1_1_2:3482527-3483229:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	476.7643737792969	2	476.304939	950.595324	-0.40823	-0.00019444	-3.623	-0.0017257	-4.0313	-0.0019201	476.30304128282484	33.715	0.38775	33.715	33.533	33.921	0					13	7	2	0	0	0	0.028476	1	1555	1555		14.664	6.4328	1	39821			42830	12742	35403	35426	46293	46293					0.11805030558900853
PKPMSKRVF	9	Unmodified	_PKPMSKRVF_					0	0	0		L1PB1_dup5905|chr7:93807211-93809400:+|8.337698263303487|0.2056128638309657|5.34|416.0|136|3|anti-sense	L1PB1_dup5905|chr7:93807211-93809400:+|8.337698263303487|0.2056128638309657|5.34|416.0|136|3|anti-sense	L1PB1_dup5905|chr7:93807211-93809400:+|8.337698263303487|0.2056128638309657|5.34|416.0|136|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.3174438476562	2	545.315512	1088.61647	-0.51373	-0.00028014	2.7466	0.0014978	2.2329	0.0012176	545.3169196404446	142.63	4.7541	141.19	139.73	144.49	-1.4427					172	91	2	0	0	0	0.56889	1	14040	14040		35.618	0	1	155190			42831	14776	35404	35427	46294	46294					0.07570672596102668
PKPQGSII	8	Unmodified	_PKPQGSII_					0	0	0			REV__ALPK2|p.S221Qfs*37|1|0.08|ENSG00000198796|chr18:58580115-58580116|-/AAGTTATGTATCAAGCACAACATCTTTTG|frameshift_variant	REV__ALPK2|p.S221Qfs*37|1|0.08|ENSG00000198796|chr18:58580115-58580116|-/AAGTTATGTATCAAGCACAACATCTTTTG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	420.2529602050781	2	420.252903	838.491253	0.41101	0.00017273	-0.075014	-3.1525E-05	0.336	0.0001412	420.2527341495351	108.37	2.424	108.15	107.78	110.2	-0.22498					119	48	4	0	0	0	0.66704	1	10163	10163		50.025	2.1089	1	477420	+		42832	15591	35405	35428	46295	46295					0.06554703731376321
PKPQGSII	8	Unmodified	_PKPQGSII_					0	0	0			REV__ALPK2|p.S221Qfs*37|1|0.08|ENSG00000198796|chr18:58580115-58580116|-/AAGTTATGTATCAAGCACAACATCTTTTG|frameshift_variant	REV__ALPK2|p.S221Qfs*37|1|0.08|ENSG00000198796|chr18:58580115-58580116|-/AAGTTATGTATCAAGCACAACATCTTTTG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	420.2524719238281	2	420.252903	838.491253	0.57551	0.00024186	-0.53085	-0.00022309	0.04466	1.8769E-05	420.25256475380445	109.42	2.3842	108.27	107.88	110.26	-1.1444					107	45	4	0	0	0	0.68714	1	7849	7849		45.952	1.4209	1	608560	+		42833	15591	35405	35428	46296	46296					0.06554703731376321
PKPRCLPEM	9	Carbamidomethyl (C),Oxidation (M)	_PKPRC(Carbamidomethyl (C))LPEM(Oxidation (M))_	PKPRC(1)LPEM	PKPRCLPEM(1)	PKPRC(61)LPEM	PKPRCLPEM(61)	0	1	1		ENST00000497936.5_1_6:84884653-84936120:-|nuORF;nc|ENSG00000135315|Q5TB80-2|CEP162;ENSG00000135315|ENST00000403245|CEP162	ENST00000497936.5_1_6:84884653-84936120:-|nuORF	ENST00000497936.5_1_6:84884653-84936120:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	572.285400390625	2	572.286094	1142.55763	-1.4852	-0.00084994	1.3038	0.00074616	-0.18134	-0.00010378	572.2866735153697	32.713	1.6873	30.003	29.53	31.218	-2.7097					70	33	3	0	0	0	0.31747	1	1133	1133		60.972	8.0352	1	392360			42834	4364	35406	35429	46297	46297	44	142			-0.007941717605262966
PKPRYRNL	8	Unmodified	_PKPRYRNL_					0	0	0		nc|ENSG00000160050|Q9BUN5-3|CCDC28B	nc|ENSG00000160050|Q9BUN5-3|CCDC28B	nc|ENSG00000160050|Q9BUN5-3|CCDC28B	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.3045654296875	2	522.309075	1042.6036	-1.3075	-0.00068294	-1.7863	-0.00093301	-3.0938	-0.0016159	522.3076708198822	53.786	1.7405	50.538	50.161	51.901	-3.2474					72	33	4	0	0	0	0.62934	1	3365	3365		57.811	8.2752	1	1360800			42835	15126	35407	35430	46298	46298					0.08399977528233649
PKPSDEPERG	10	Unmodified	_PKPSDEPERG_					0	0	0			REV__TBC1D2|p.Q313Lfs*43|1|0.05|ENSG00000095383|chr9:98228992-98228993|-/ATCA|frameshift_variant	REV__TBC1D2|p.Q313Lfs*43|1|0.05|ENSG00000095383|chr9:98228992-98228993|-/ATCA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	556.2704467773438	2	556.272552	1110.53055	1.3401	0.00074546	-3.7245	-0.0020718	-2.3844	-0.0013264	556.2703298502786	61.128	1.3911	58.06	57.54	58.931	-3.0685					61	39	2	0	0	0	0.71173	1	2118	2118		29.17	2.4771	1	29839	+		42836	17290	35408	35431	46299	46299					-0.020292407757324327
PKPSKKKEK	9	Unmodified	_PKPSKKKEK_					0	0	0			REV__nc|ENSG00000065000|O14617-3|AP3D1	REV__nc|ENSG00000065000|O14617-3|AP3D1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3007202148438	2	535.340041	1068.66553	0.079116	4.2354E-05	-2.4229	-0.0012971	-2.3438	-0.0012547	535.3389330245711	31.242	0.23692	31.242	31.124	31.361	0					10	4	3	0	0	0	0.027462	1	1271	1271		20.947	0	1	29006	+		42837	28722	35409	35432	46300	46300					0.13394284156697722
PKPVTVKPVTT	11	Unmodified	_PKPVTVKPVTT_					0	0	0		ENSG00000118292|ENST00000369099|C1orf54	ENSG00000118292|ENST00000369099|C1orf54	ENSG00000118292|ENST00000369099|C1orf54	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8591918945312	2	583.860806	1165.70706	-6.9005	-0.0040289	3.2924	0.0019223	-3.608	-0.0021066	583.8626216517176	154.95	1.1831	153.88	153.56	154.74	-1.073					81	29	4	0	0	0	0.66495	1	13344	13344		38.754	7.1193	1	200380			42838	3299	35410	35433	46301	46301					0.13083420125371958
PKQAVRPGPGP	11	Unmodified	_PKQAVRPGPGP_					0	0	0			REV__nc|ENSG00000171992|Q8N3V7|SYNPO	REV__nc|ENSG00000171992|Q8N3V7|SYNPO	MULTI-MSMS	OvCa99_classI_Rep5	1	552.3240356445312	2	552.31964	1102.62473	1.526	0.00084285	0.90213	0.00049826	2.4281	0.0013411	552.3197818028196	122.84	0.83243	122.84	122.45	123.28	0					39	17	3	0	0	0	0.69455	1	14180	14180		31.53	3.6476	1	226140	+		42839	29006	35411	35434	46302	46302					0.07751942837080605
PKQGGMNWADL	11	Unmodified	_PKQGGMNWADL_					0	0	0		ROBO1|p.C1437Sfs*15|1|0.21|ENSG00000169855|chr3:78614773-78614774|-/TG|frameshift_variant;nc|ENSG00000169855|Q9Y6N7-6|ROBO1;nc|ENSG00000169855|Q9Y6N7-5|ROBO1;nc|ENSG00000169855|Q9Y6N7-4|ROBO1;nc|ENSG00000169855|Q9Y6N7-3|ROBO1;ENSG00000169855|ENST00000464233|ROBO1;nc|ENSG00000169855|Q9Y6N7-2|ROBO1	ROBO1|p.C1437Sfs*15|1|0.21|ENSG00000169855|chr3:78614773-78614774|-/TG|frameshift_variant	ROBO1|p.C1437Sfs*15|1|0.21|ENSG00000169855|chr3:78614773-78614774|-/TG|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	406.1983337402344	3	406.197491	1215.57064	0.78384	0.00031839	-1.0968	-0.00044551	-0.31293	-0.00012711	406.197128709912	48.271	1.9154	48.271	48.028	49.944	0					118	43	6	0	0	0	0.50928	1	3576	3576		61.765	20.338	1	22349000			42840	7044	35412	35435	46303	46303					-0.028520173767901724
PKQKSAEMEP	10	Unmodified	_PKQKSAEMEP_					0	0	0		ENST00000449034.1_1_1:21620020-21620167:+|nuORF	ENST00000449034.1_1_1:21620020-21620167:+|nuORF	ENST00000449034.1_1_1:21620020-21620167:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	572.3177490234375	2	572.786981	1143.55941	-1.232	-0.00070568	-3.2513	-0.0018623	-4.4833	-0.002568	572.786228130078	81.8	1.2979	79.478	79.106	80.404	-2.3226					70	25	4	0	0	0	0.02661	1	4537	4537		40.778	0	1	76639			42841	12024	35413	35436	46304	46304					-0.006628394709196073
PKQQHLRL	8	Unmodified	_PKQQHLRL_					0	0	0		ENSG00000146950|ENST00000380913|SHROOM2	ENSG00000146950|ENST00000380913|SHROOM2	ENSG00000146950|ENST00000380913|SHROOM2	MULTI-MSMS	OvCa9_classI_Rep2	2	510.3092956542969	2	510.309075	1018.6036	0.72188	0.00036838	1.5315	0.00078153	2.2534	0.0011499	510.3097721938746	126.6	2.2195	126.37	126.05	128.27	-0.2359					111	44	5	0	0	0	0.67745	1	12415	12415		47.916	1.9434	1	879330			42842	5320	35414	35437	46305	46305					0.09503977528220275
PKQRPMVIL	9	Unmodified	_PKQRPMVIL_					0	0	0			REV__ENST00000409514.5_2_2:233446641-233446863:+|nuORF	REV__ENST00000409514.5_2_2:233446641-233446863:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.772705078125	2	541.331162	1080.64777	0.21775	0.00011788	-3.569	-0.001932	-3.3512	-0.0018141	541.3290973695721	99.248	1.5508	97.563	96.697	98.248	-1.685					56	29	3	0	0	0	0.027462	1	6583	6583		31.955	14.59	1	81017	+		42843	25470	35415	35438	46306	46306					0.11067245630192701
PKQRPMVIL	9	Unmodified	_PKQRPMVIL_					0	0	0			REV__ENST00000409514.5_2_2:233446641-233446863:+|nuORF	REV__ENST00000409514.5_2_2:233446641-233446863:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	541.331162	1080.64777	-1.59	-0.0008607	-2.2192	-0.0012013	-3.8091	-0.002062	541.329854180384	99.83	1.4881	97.504	97.003	98.491	-2.3253	-0.029245	0.00091072	NaN	24.203	58	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75526	+		42844	25470	35415	35438							0.11067245630192701
PKQSELHRN	9	Unmodified	_PKQSELHRN_					0	0	0			REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|48|2|sense	REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|48|2|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.802490234375	2	554.796529	1107.5785	2.1067	0.0011688	2.8102	0.0015591	4.9169	0.0027279	554.798098158953	138.14	0.58286	136.62	136.34	136.92	-1.5284					21	13	2	0	0	0	0.61208	1	13441	13441		30.504	2.6214	1	22751	+		42845	28388	35416	35439	46307	46307					0.029018779349826218
PKRGVRLN	8	Unmodified	_PKRGVRLN_					0	0	0			REV__ENSG00000127580|ENST00000293883|WDR24	REV__ENSG00000127580|ENST00000293883|WDR24	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.296142578125	2	470.295968	938.577383	0.42479	0.00019978	-1.0382	-0.00048825	-0.61338	-0.00028847	470.29547904277877	21.564	1.9538	20.226	19.77	21.724	-1.3386					105	43	5	0	0	0	0.75208	1	216	216		17.365	0.89182	1	1545000	+		42846	18821	35417	35440	46308	46308					0.10563708356733059
PKRIIQSPTRS	11	Unmodified	_PKRIIQSPTRS_					0	0	0			REV__ENST00000509517.1_1_4:146067334-146072008:-|nuORF	REV__ENST00000509517.1_1_4:146067334-146072008:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8820190429688	2	641.883136	1281.75172	-4.6434	-0.0029805	3.7859	0.0024301	-0.85746	-0.00055039	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.72479	1	15510	15510		18.262	0.79408	1	543390	+		42847	20951	35418	35441	46309	46309					0.12211243991396259
PKRILFSAS	9	Unmodified	_PKRILFSAS_					0	0	0			REV__ENSG00000139641|ENST00000394048|ESYT1	REV__ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	OvCa9_classI_Rep3	3	509.80389404296875	2	509.805834	1017.59712	-1.3099	-0.00066782	-2.9211	-0.0014892	-4.231	-0.002157	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.6653	1	11299	11299		24.203	2.5004	1	99460	+		42848	19626	35419	35442	46310	46310					0.08902039576844345
PKRISRDPRHF	11	Unmodified	_PKRISRDPRHF_					0	0	0		tr|A0A7D7A450|A0A7D7A450_9CLOTN-acetylmuramoyl-L-alanineamidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01780PE=4SV=1	tr|A0A7D7A450|A0A7D7A450_9CLOTN-acetylmuramoyl-L-alanineamidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01780PE=4SV=1	tr|A0A7D7A450|A0A7D7A450_9CLOTN-acetylmuramoyl-L-alanineamidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01780PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.29608154296875	3	470.26886	1407.78475	0.40736	0.00019157	-0.59318	-0.00027895	-0.18582	-8.7386E-05	470.26873944141596	21.483	0.76076	20.144	19.813	20.574	-1.3386					32	14	3	0	0	0	0.026221	1	157	157		6.001	0	1	52297			42849	36136	35420	35443	46311	46311					0.09716870834108704
PKRLPGHHL	9	Unmodified	_PKRLPGHHL_					0	0	0			REV__nc|ENSG00000146151|Q8TB92-4|HMGCLL1	REV__nc|ENSG00000146151|Q8TB92-4|HMGCLL1	MULTI-MSMS	OvCa9_classI_Rep2	2	527.8184204101562	2	527.817067	1053.61958	0.15404	8.1304E-05	2.4095	0.0012718	2.5636	0.0013531	527.8180746611931	131.65	2.3091	131.42	131.15	133.46	-0.22696					124	46	4	0	0	0	0.67509	1	13014	13014		23.042	1.0826	1	610490	+		42850	28915	35421	35444	46312	46312					0.09491683765122616
PKRPRGGG	8	Unmodified	_PKRPRGGG_					0	0	0		RING1|p.P198L|1|0.37|ENSG00000204227|chr6:33211295-33211295|C/T|missense_variant;nc|ENSG00000204227|Q06587-2|RING1;ENSG00000204227|ENST00000374656|RING1	RING1|p.P198L|1|0.37|ENSG00000204227|chr6:33211295-33211295|C/T|missense_variant	RING1|p.P198L|1|0.37|ENSG00000204227|chr6:33211295-33211295|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	412.7458190917969	2	412.746111	823.477669	-0.0041108	-1.6967E-06	0.23932	9.8779E-05	0.23521	9.7083E-05	412.74611275073886	135.39	1.6252	134.28	133.62	135.24	-1.1076					83	32	4	0	0	0	0.75915	1	10925	10925		20.482	0	1	589310			42851	8959	35422	35445	46313	46313					0.05886890742817741
PKRPTAAPEL	10	Unmodified	_PKRPTAAPEL_					0	0	0			REV__ENST00000391694.4_1_19:58989172-58992090:+|nuORF	REV__ENST00000391694.4_1_19:58989172-58992090:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	540.314697265625	2	540.314023	1078.61349	-0.0032497	-1.7559E-06	-0.40502	-0.00021884	-0.40827	-0.00022059	540.3136598498987	87.836	1.514	85.659	85.19	86.704	-2.1768					78	29	5	0	0	0	0.42962	1	5310	5310		64.207	0	1	618000	+		42852	17111	35423	35446	46314	46314					0.07733120742932442
PKRQGLER	8	Unmodified	_PKRQGLER_					0	0	0		ENST00000392617.7_1_17:72667365-72740608:+|nuORF	ENST00000392617.7_1_17:72667365-72740608:+|nuORF	ENST00000392617.7_1_17:72667365-72740608:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.6737060546875	2	492.290882	982.567212	1.0416	0.00051279	-1.3136	-0.00064665	-0.27192	-0.00013386	492.29006057542796	43.853	0.3965	41.143	40.906	41.303	-2.7097					10	7	2	0	0	0	0.028476	1	2431	2431		23.042	4.7181	1	14050			42853	11230	35424	35447	46315	46315					0.07523100631522084
PKRQGLER	8	Unmodified	_PKRQGLER_					0	0	0		ENST00000392617.7_1_17:72667365-72740608:+|nuORF	ENST00000392617.7_1_17:72667365-72740608:+|nuORF	ENST00000392617.7_1_17:72667365-72740608:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	492.290882	982.567212	-0.78828	-0.00038806	0.37297	0.00018361	-0.41531	-0.00020445	492.29115133795494	44.058	0.75105	41.05	40.744	41.495	-3.0074	-0.04656	0.00069903	NaN	23.042	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70508			42854	11230	35424	35447							0.07523100631522084
PKRSPREH	8	Unmodified	_PKRSPREH_					0	0	0			REV__ENSG00000127586|ENST00000262315|CHTF18;REV__ENST00000464728.5_1_16:841010-841472:+|nuORF	REV__ENST00000464728.5_1_16:841010-841472:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.7820739746094	2	503.780682	1005.54681	-0.68706	-0.00034613	2.6344	0.0013271	1.9473	0.00098102	503.78212206968385	143.59	0.88156	142.15	141.84	142.72	-1.4427					21	16	2	0	0	0	0.74754	1	14078	14078		27.882	1.0861	1	43459	+		42855	18822;26155	35425	35448	46316	46316					0.044259299717055
PKSAVSHKIL	10	Unmodified	_PKSAVSHKIL_					0	0	0		ENSG00000186160|ENST00000334194|CYP4Z1;nc|ENSG00000290456|Q8N1L4-2|CYP4Z2P;nc|ENSG00000290456|Q8N1L4|CYP4Z2P	ENSG00000186160|ENST00000334194|CYP4Z1	ENSG00000186160|ENST00000334194|CYP4Z1	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3300170898438	2	540.332216	1078.64988	-1.5762	-0.00085169	-2.2598	-0.001221	-3.836	-0.0020727	540.3309156564876	138.68	4.2384	138.45	137.13	141.37	-0.22697					227	86	3	0	0	0	0.75313	1	13711	13711		24.519	1.4767	1	66382			42856	8318	35426	35449	46317	46317					0.11369997639667417
PKSKLNIYQS	10	Unmodified	_PKSKLNIYQS_					0	0	0			REV__tr|A0A7D7A595|A0A7D7A595_9CLOTDUF4883familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06315PE=4SV=1	REV__tr|A0A7D7A595|A0A7D7A595_9CLOTDUF4883familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06315PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.320556640625	2	589.332413	1176.65027	1.9152	0.0011287	4.2788	0.0025217	6.194	0.0036503	589.3354724542455	128.82	0.4173	128.82	128.65	129.07	0					11	8	3	0	0	0	0.026803	1	14911	14911		32.751	0	1	202970	+		42857	32631	35427	35450	46318	46318					0.0690137256883645
PKSPLLVKL	9	Unmodified	_PKSPLLVKL_					0	0	0			REV__tr|A0A7D7A669|A0A7D7A669_9CLOTMBLfoldmetallo-hydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09185PE=4SV=1	REV__tr|A0A7D7A669|A0A7D7A669_9CLOTMBLfoldmetallo-hydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09185PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	497.8373107910156	2	497.836603	993.658653	2.0463	0.0010187	-0.34466	-0.00017158	1.7017	0.00084715	497.83626575181387	113	0.72227	113	112.66	113.38	0					33	15	3	0	0	0	0.28934	1	12870	12870		64.207	0	1	742350	+		42858	32653	35428	35451	46319	46319					0.16156971276143395
PKSRIRAH	8	Unmodified	_PKSRIRAH_					0	0	0		ENST00000522519.5_1_8:72756566-72875195:+|nuORF	ENST00000522519.5_1_8:72756566-72875195:+|nuORF	ENST00000522519.5_1_8:72756566-72875195:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	482.794189453125	2	482.793592	963.572632	1.1104	0.00053611	-4.2198	-0.0020373	-3.1094	-0.0015012	482.79146252518456	155.03	3.9291	155.03	153.98	157.91	0					134	77	2	0	0	0	0.75661	1	18263	18263		19.36	0	1	132880			42859	13138	35429	35452	46320	46320					0.08938824213976204
PKSSEDPNYTL	11	Unmodified	_PKSSEDPNYTL_					0	0	0			REV__nc|ENSG00000171557|P02679-2|FGG	REV__nc|ENSG00000171557|P02679-2|FGG	MULTI-MSMS	OvCa99_classI_Rep5	1	625.8071899414062	2	625.7986	1249.58265	1.9848	0.0012421	3.1878	0.0019949	5.1727	0.003237	625.8003547014478	74.913	0.57568	74.913	74.676	75.251	0					31	13	3	0	0	0	0.59615	1	7448	7448		45.022	7.2107	1	1941700	+		42860	21625	35430	35453	46321	46321					-0.03216122152616663
PKSSTKPNK	9	Unmodified	_PKSSTKPNK_					0	0	0		nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C	nc|ENSG00000151067|Q13936-26|CACNA1C	nc|ENSG00000151067|Q13936-26|CACNA1C	MULTI-MSMS	OvCa9_classI_Rep2	2	493.7843933105469	2	493.785099	985.555644	1.4093	0.00069587	-1.7511	-0.00086466	-0.34184	-0.00016879	493.78415838053036	41.942	1.876	39.232	38.832	40.708	-2.7097					88	37	4	0	0	0	0.28934	1	2249	2249		64.207	2.0999	1	1028200			42861	15092	35431	35454	46322	46322					0.06228858817519267
PKSSYLKNQ	9	Unmodified	_PKSSYLKNQ_					0	0	0		ENSG00000214929|ENST00000344803|SPATA31D1	ENSG00000214929|ENST00000344803|SPATA31D1	ENSG00000214929|ENST00000344803|SPATA31D1	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.7842407226562	2	532.790381	1063.56621	2.599	0.0013847	-0.72298	-0.0003852	1.876	0.00099951	532.7902841358189	75.518	0.47124	75.518	75.33	75.801	0					18	11	2	0	0	0	0.027462	1	7494	7494		35.618	2.8059	1	995590			42862	9189	35432	35455	46323	46323					0.036968414719467546
PKSYYRDWSQE	11	Unmodified	_PKSYYRDWSQE_					0	0	0		ENST00000369905.8_1_10:104239961-104240195:-|nuORF	ENST00000369905.8_1_10:104239961-104240195:-|nuORF	ENST00000369905.8_1_10:104239961-104240195:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.2825927734375	3	486.893124	1457.65754	-0.062576	-3.0468E-05	3.0907	0.0015048	3.0281	0.0014744	486.89443076650394	79.133	0.28715	76.381	76.179	76.466	-2.7514					7	5	2	0	0	0	0.026401	1	6412	6412		8.4073	0	1	15972			42863	10911	35433	35456	46324	46324					-0.05297939621414116
PKSYYRDWSQE	11	Unmodified	_PKSYYRDWSQE_					0	0	0		ENST00000369905.8_1_10:104239961-104240195:-|nuORF	ENST00000369905.8_1_10:104239961-104240195:-|nuORF	ENST00000369905.8_1_10:104239961-104240195:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		3	486.893124	1457.65754	-0.65861	-0.00032067	5.471	0.0026638	4.8124	0.0023431	486.8956808950741	78.775	0.44462	76.422	76.2	76.645	-2.3527	0.020512	0.0010011	NaN	8.4073	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14399			42864	10911	35433	35456							-0.05297939621414116
PKTEKALRR	9	Unmodified	_PKTEKALRR_					0	0	0		ENSG00000177354|ENST00000374144|C10orf71	ENSG00000177354|ENST00000374144|C10orf71	ENSG00000177354|ENST00000374144|C10orf71	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.7997436523438	2	549.840739	1097.66693	-1.235	-0.00067903	1.1192	0.00061539	-0.11573	-6.3635E-05	549.8412564862863	43.769	1.1668	40.762	40.378	41.545	-3.0074					58	22	3	0	0	0	0.027462	1	2122	2122		29.15	0	1	149530			42865	7673	35434	35457	46325	46325					0.1219991824546014
PKTEKALRR	9	Unmodified	_PKTEKALRR_					0	0	0		ENSG00000177354|ENST00000374144|C10orf71	ENSG00000177354|ENST00000374144|C10orf71	ENSG00000177354|ENST00000374144|C10orf71	MULTI-MATCH	OvCa9_classI_Rep2	2		2	549.840739	1097.66693	0.83804	0.00046079	-0.71315	-0.00039212	0.12489	6.8668E-05	549.8402826423094	43.739	0.84499	41.029	40.808	41.653	-2.7097	0.13353	-0.0012235	NaN	29.15	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115900			42866	7673	35434	35457							0.1219991824546014
PKTFPTYLP	9	Unmodified	_PKTFPTYLP_					0	0	0			REV__ENST00000510927.5_1_4:106967729-107168455:-|nuORF	REV__ENST00000510927.5_1_4:106967729-107168455:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.294677734375	2	532.294768	1062.57498	2.4634	0.0013112	-3.4789	-0.0018518	-1.0155	-0.00054055	532.2928467017024	88.87	0.73491	88.87	88.384	89.119	0					31	17	3	0	0	0	0.027462	1	9481	9481		30.504	21.681	1	516360	+		42867	19959	35435	35458	46326	46326					0.04619815108412695
PKTGNITL	8	Unmodified	_PKTGNITL_					0	0	0		ENSG00000280165|ENST00000409204|PCDH20	ENSG00000280165|ENST00000409204|PCDH20	ENSG00000280165|ENST00000409204|PCDH20	MULTI-SECPEP	OvCa99_classI_Rep5	1	422.2322998046875	2	422.25036	842.486168	0.099621	4.2065E-05	-1.4984	-0.00063269	-1.3988	-0.00059063	422.24939530048465	51.258	0.59967	51.258	50.775	51.374	0					24	13	2	0	0	0	0.028476	1	3952	3952		17.365	0	1	267430			42868	9601	35436	35459	46327	46327					0.05862399868760804
PKTHLYITI	9	Unmodified	_PKTHLYITI_					0	0	0		L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|23|1|sense;L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|9|1|sense;L1PA3_dup1152|chr2:117623254-117629278:+|1.1606400945596698|0.0841542146032081|3.79|394.0|117|3|sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.448906025747238|0.1317034148076854|3.46|417.0|9|1|sense;L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|21|2|sense;L1PA2_dup23|chr1:43114528-43120516:-|1.3533449411662286|0.3152228216366226|2.1|404.0|9|1|sense	L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|23|1|sense	L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|23|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.84716796875	2	543.321317	1084.62808	1.2223	0.00066409	-3.4109	-0.0018532	-2.1886	-0.0011891	543.3192747237382	79.19	0.52547	79.19	78.911	79.436	0					25	11	3	0	0	0	0.027462	1	8071	8071		25.574	0	1	1029800			42869	14531	35437	35460	46328	46328					0.08915192891072365
PKTILRKYSV	10	Unmodified	_PKTILRKYSV_					0	0	0		ENST00000306353.7_2_2:85825849-85826182:-|nuORF	ENST00000306353.7_2_2:85825849-85826182:-|nuORF	ENST00000306353.7_2_2:85825849-85826182:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	602.8737182617188	2	602.874248	1203.73394	-1.257	-0.00075783	0.78262	0.00047182	-0.47442	-0.00028601	602.8746995198144	103.48	1.8281	102.8	102.48	104.3	-0.68459					107	36	5	0	0	0	0.50873	2	9544	9544;9549		53.089	8.7118	1	1480000			42870	10243	35438	35461	46329;46330	46329					0.14022528736541062
PKTILRKYSV	10	Unmodified	_PKTILRKYSV_					0	0	0		ENST00000306353.7_2_2:85825849-85826182:-|nuORF	ENST00000306353.7_2_2:85825849-85826182:-|nuORF	ENST00000306353.7_2_2:85825849-85826182:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	602.8751831054688	2	602.874248	1203.73394	2.2502	0.0013566	-2.7856	-0.0016794	-0.53541	-0.00032278	602.8725233476795	104.38	1.6621	102.94	102.6	104.27	-1.4347					105	31	5	0	0	0	0.42082	2	7271	7271;7277		65.465	3.5529	1	1606000			42871	10243	35438	35461	46331;46332	46331					0.14022528736541062
PKTKAVPKVK	10	Unmodified	_PKTKAVPKVK_					0	0	0		ENSG00000173614|ENST00000377205|NMNAT1	ENSG00000173614|ENST00000377205|NMNAT1	ENSG00000173614|ENST00000377205|NMNAT1	MULTI-SECPEP	OvCa9_classI_Rep3	3	548.3176879882812	2	548.366059	1094.71756	-0.82345	-0.00045155	-1.6005	-0.00087768	-2.424	-0.0013292	548.8668636704854	74.38	0.19794	71.969	71.895	72.093	-2.4106					5	3	2	0	0	0	0.02676	1	3685	3685		33.922	28.701	1	7697.1			42872	7398	35439	35462	46333	46333					0.17399447570460325
PKTPRQSLSIR	11	Unmodified	_PKTPRQSLSIR_					0	0	0		ENSG00000107863|ENST00000396432|ARHGAP21;ENST00000401578.2_1_6:80776237-80776996:-|nuORF;nc|ENSG00000107863|Q5T5U3-3|ARHGAP21	ENSG00000107863|ENST00000396432|ARHGAP21	ENSG00000107863|ENST00000396432|ARHGAP21	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8826293945312	2	641.883136	1281.75172	-2.5182	-0.0016164	1.1749	0.00075413	-1.3433	-0.00086223	641.8839546837315	150.47	2.9704	149.03	147.78	150.75	-1.4344					235	64	4	0	0	0	0.71582	1	14804	14804		24.232	3.2849	1	344900			42873	2622	35440	35463	46334	46334					0.12211243991396259
PKTQESKLK	9	Unmodified	_PKTQESKLK_					0	0	0		ENSG00000163867|ENST00000357182|ZMYM6;ENST00000493328.5_1_1:35480755-35496240:-|nuORF;nc|ENSG00000163867|O95789-2|ZMYM6;nc|ENSG00000163867|O95789-4|ZMYM6;nc|ENSG00000163867|O95789-1|ZMYM6	ENSG00000163867|ENST00000357182|ZMYM6	ENSG00000163867|ENST00000357182|ZMYM6	MULTI-MSMS	OvCa99_classI_Rep5	1	529.8132934570312	2	529.813856	1057.61316	-0.86643	-0.00045905	0.39187	0.00020762	-0.47456	-0.00025143	529.8140194233277	28.265	0.44786	28.265	28.14	28.588	0					18	8	3	0	0	0	0.51865	1	907	907		40.778	2.9666	1	184240			42874	6367	35441	35464	46335	46335					0.0866570102307378
PKTQESKLK	9	Unmodified	_PKTQESKLK_					0	0	0		ENSG00000163867|ENST00000357182|ZMYM6;ENST00000493328.5_1_1:35480755-35496240:-|nuORF;nc|ENSG00000163867|O95789-2|ZMYM6;nc|ENSG00000163867|O95789-4|ZMYM6;nc|ENSG00000163867|O95789-1|ZMYM6	ENSG00000163867|ENST00000357182|ZMYM6	ENSG00000163867|ENST00000357182|ZMYM6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	529.813856	1057.61316	-0.27658	-0.00014654	0.054003	2.8612E-05	-0.22258	-0.00011793	529.8140052390667	31.06	0.29464	28.35	28.248	28.543	-2.7097	0.042429	-0.00029637	NaN	40.778	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6845.3			42875	6367	35441	35464							0.0866570102307378
PKVHESPKF	9	Unmodified	_PKVHESPKF_					0	0	0			REV__nc|ENSG00000077238|P24394-2|IL4R	REV__nc|ENSG00000077238|P24394-2|IL4R	MULTI-SECPEP	OvCa9_classI_Rep2	2	535.7786254882812	2	534.795466	1067.57638	-2.1654	-0.0011581	-2.376	-0.0012707	-4.5415	-0.0024288	534.7943076224607	51.114	0.79367	48.32	48.024	48.818	-2.794					30	15	3	0	0	0	0.027462	1	3343	3343		20.947	0	1	34301	+		42876	17007	35442	35465	46336	46336					0.045294491971844764
PKVIKDSYT	9	Unmodified	_PKVIKDSYT_					0	0	0		tr|A0A7D7A5L2|A0A7D7A5L2_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06535PE=4SV=1	tr|A0A7D7A5L2|A0A7D7A5L2_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06535PE=4SV=1	tr|A0A7D7A5L2|A0A7D7A5L2_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06535PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.2774047851562	2	525.795132	1049.57571	-1.1683	-0.00061429	3.9075	0.0020545	2.7392	0.0014402	526.2975969854714	50.023	0.74412	47.229	46.686	47.43	-2.794					27	14	3	0	0	0	0.027232	1	3154	3154		76.774	10.877	1	22191			42877	36173	35443	35466	46337	46337					0.05290609757457787
PKVIQLKEP	9	Unmodified	_PKVIQLKEP_					0	0	0			REV__nc|ENSG00000182606|Q9UPV9-3|TRAK1	REV__nc|ENSG00000182606|Q9UPV9-3|TRAK1	MULTI-MSMS	OvCa99_classI_Rep5	1	526.3295288085938	2	526.329142	1050.64373	0.96315	0.00050693	1.5264	0.0008034	2.4896	0.0013103	526.3298232937422	145.43	0.69275	145.43	145.13	145.83	0					26	14	2	0	0	0	0.44568	1	16998	16998		47.657	3.5405	1	56703	+		42878	29041	35444	35467	46338	46338					0.12043479408134772
PKVKLRRWKGE	11	Unmodified	_PKVKLRRWKGE_					0	0	0		nc|ENSG00000065665|Q9H9S3-2|SEC61A2	nc|ENSG00000065665|Q9H9S3-2|SEC61A2	nc|ENSG00000065665|Q9H9S3-2|SEC61A2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.2384948730469	3	466.289372	1395.84629	-1.0592	-0.00049391	-0.50124	-0.00023372	-1.5605	-0.00072763	466.28893228563817	43.461	0.76884	40.454	40.22	40.989	-3.0074					35	14	4	0	0	0	0.026033	1	2139	2139		28.577	16.144	1	99941			42879	14885	35445	35468	46339	46339					0.16419802533391703
PKVKLRRWKGE	11	Unmodified	_PKVKLRRWKGE_					0	0	0		nc|ENSG00000065665|Q9H9S3-2|SEC61A2	nc|ENSG00000065665|Q9H9S3-2|SEC61A2	nc|ENSG00000065665|Q9H9S3-2|SEC61A2	MULTI-MATCH	OvCa9_classI_Rep2	2		3	466.289372	1395.84629	0.57283	0.00026711	-2.1122	-0.00098487	-1.5393	-0.00071777	466.2880587886233	43.116	0.49541	40.407	40.213	40.708	-2.7097	-0.023615	-0.001877	NaN	28.577	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17585			42880	14885	35445	35468							0.16419802533391703
PKVMIYLL	8	Unmodified	_PKVMIYLL_					0	0	0			REV__tr|A0A553SJM0|A0A553SJM0_NIACIGlycosyltransferasefamily39proteinOS=NialliacirculansOX=1397GN=CEQ21_17055PE=4SV=1	REV__tr|A0A553SJM0|A0A553SJM0_NIACIGlycosyltransferasefamily39proteinOS=NialliacirculansOX=1397GN=CEQ21_17055PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.2333679199219	2	488.798632	975.582711	-0.1517	-7.4151E-05	-1.8861	-0.00092191	-2.0378	-0.00099606	488.79747871031185	46.699	0.70665	46.699	46.501	47.208	0					29	15	2	0	0	0	0.028476	1	3306	3306		20.482	7.5226	1	120640	+		42881	30017	35446	35469	46340	46340					0.0939425110434513
PKVRHGGT	8	Unmodified	_PKVRHGGT_					0	0	0			REV__ENST00000524517.5_1_10:77098119-77118447:+|nuORF	REV__ENST00000524517.5_1_10:77098119-77118447:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	426.24658203125	2	426.245944	850.477334	-0.93249	-0.00039747	1.1012	0.00046937	0.16868	7.1901E-05	426.2463036759244	138.33	1.7168	138.1	137.59	139.3	-0.22696					83	34	3	0	0	0	0.75915	1	13830	13830		20.482	0	1	161940	+		42882	27100	35447	35470	46341	46341					0.046114710229517186
PKVSVNRVREV	11	Unmodified	_PKVSVNRVREV_					0	0	0		tr|A0A553SM40|A0A553SM40_NIACIGlycosidehydrolasefamily2OS=NialliacirculansOX=1397GN=CEQ21_21780PE=3SV=1	tr|A0A553SM40|A0A553SM40_NIACIGlycosidehydrolasefamily2OS=NialliacirculansOX=1397GN=CEQ21_21780PE=3SV=1	tr|A0A553SM40|A0A553SM40_NIACIGlycosidehydrolasefamily2OS=NialliacirculansOX=1397GN=CEQ21_21780PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8817138671875	2	641.883136	1281.75172	-4.6434	-0.0029805	3.7859	0.0024301	-0.85746	-0.00055039	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.72479	1	15492	15492		18.262	1.5447	1	543390			42883	33797	35448	35471	46342	46342					0.12211243991396259
PKVTFARSL	9	Unmodified	_PKVTFARSL_					0	0	0			REV__ENST00000541442.5_1_16:31508264-31519694:-|nuORF	REV__ENST00000541442.5_1_16:31508264-31519694:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	509.80364990234375	2	509.805834	1017.59712	-1.3099	-0.00066782	-2.9211	-0.0014892	-4.231	-0.002157	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.67509	1	11192	11192		23.042	3.0457	1	99460	+		42884	19694	35449	35472	46343	46343					0.08902039576844345
PKVTNALTTE	10	Unmodified	_PKVTNALTTE_					0	0	0			REV__AluY_dup35562|chr6:33325560-33325873:+|2.071996534774159|0.0033360021601532|9.28|373.0|1|1|sense	REV__AluY_dup35562|chr6:33325560-33325873:+|2.071996534774159|0.0033360021601532|9.28|373.0|1|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3223876953125	2	537.295496	1072.57644	1.9441	0.0010446	0.63056	0.0003388	2.5747	0.0013834	537.2957377238047	102.98	0.20644	102.98	102.89	103.1	0					6	4	2	0	0	0	0.026688	1	11494	11494		40.778	3.6191	1	166480	+		42885	15622	35450	35473	46344	46344					0.04305404406522939
PKWDDKPYN	9	Unmodified	_PKWDDKPYN_					0	0	0			REV__nc|ENSG00000086991|Q9NPH5-3|NOX4	REV__nc|ENSG00000086991|Q9NPH5-3|NOX4	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.3643188476562	2	581.780013	1161.54547	-0.41956	-0.00024409	-3.0041	-0.0017478	-3.4237	-0.0019918	581.7779876345586	56.727	0.72376	56.727	56.498	57.221	0					29	16	3	0	0	0	0.027462	1	4711	4711		39.253	0	1	705110	+		42886	28746	35451	35474	46345	46345					-0.028837489077204737
PKWGNAAVPE	10	Unmodified	_PKWGNAAVPE_					0	0	0			REV__tr|A0A553SGH1|A0A553SGH1_NIACISporegernimationproteinKCOS=NialliacirculansOX=1397GN=CEQ21_10805PE=3SV=1	REV__tr|A0A553SGH1|A0A553SGH1_NIACISporegernimationproteinKCOS=NialliacirculansOX=1397GN=CEQ21_10805PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	535.7616577148438	2	534.777274	1067.53999	-0.97397	-0.00052086	1.1865	0.00063453	0.21255	0.00011367	534.7776790987192	78.266	0.65454	76.526	76.249	76.903	-1.7398					19	12	2	0	0	0	0.026659	1	6541	6541		45.972	0	1	20160	+		42887	29699	35452	35475	46346	46346					0.008925723004722386
PKWRMNKL	8	Unmodified	_PKWRMNKL_					0	0	0			REV__nc|ENSG00000149970|Q8WXI2-5|CNKSR2	REV__nc|ENSG00000149970|Q8WXI2-5|CNKSR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3223876953125	2	536.807854	1071.60115	2.265	0.0012159	-4.2229	-0.0022669	-1.9579	-0.001051	536.8054192320465	102.86	0.58766	102.86	102.63	103.22	0					17	13	2	0	0	0	0.028476	1	11494	11494		33.516	0	1	1111400	+		42888	20180	35453	35476	46347	46347					0.06821805798927016
PKWTRWNGR	9	Unmodified	_PKWTRWNGR_					0	0	0			REV__ENST00000261900.7_1_12:49087753-49087795:-|nuORF	REV__ENST00000261900.7_1_12:49087753-49087795:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.2305908203125	3	400.884346	1199.63121	1.4027	0.00056234	1.901	0.00076208	3.3037	0.0013244	400.88501875803917	30.756	0.63897	30.756	30.532	31.171	0					26	12	3	0	0	0	0.027462	1	1252	1252		28.081	0	1	113410	+		42889	23962	35454	35477	46348	46348					0.03937880788430448
PKYIRPSLPPL	11	Unmodified	_PKYIRPSLPPL_					0	0	0			REV__tr|A0A553SHZ8|A0A553SHZ8_NIACITypeVIIsecretionproteinEssCOS=NialliacirculansOX=1397GN=essCPE=4SV=1	REV__tr|A0A553SHZ8|A0A553SHZ8_NIACITypeVIIsecretionproteinEssCOS=NialliacirculansOX=1397GN=essCPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	640.8897705078125	2	640.889898	1279.76524	-0.17045	-0.00010924	0.2933	0.00018797	0.12285	7.8731E-05	640.8899760073222	130.96	1.1409	130.73	130.4	131.54	-0.22697					67	22	4	0	0	0	0.68399	1	12880	12880		35.152	4.5832	1	368320	+		42890	29856	35455	35478	46349	46349					0.13655101770632427
PKYIRPSLPPL	11	Unmodified	_PKYIRPSLPPL_					0	0	0			REV__tr|A0A553SHZ8|A0A553SHZ8_NIACITypeVIIsecretionproteinEssCOS=NialliacirculansOX=1397GN=essCPE=4SV=1	REV__tr|A0A553SHZ8|A0A553SHZ8_NIACITypeVIIsecretionproteinEssCOS=NialliacirculansOX=1397GN=essCPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	640.8911743164062	2	640.889898	1279.76524	-0.17161	-0.00010998	0.27241	0.00017459	0.1008	6.4604E-05	640.8899625944715	132.12	1.093	131	130.64	131.73	-1.1249					68	21	4	0	0	0	0.63561	1	10556	10556		41.427	8.6761	1	271940	+		42891	29856	35455	35478	46350	46350					0.13655101770632427
PKYKLSNK	8	Unmodified	_PKYKLSNK_					0	0	0		tr|A0A7D6VWR8|A0A7D6VWR8_9CLOTHomoserineO-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=metAPE=3SV=1	tr|A0A7D6VWR8|A0A7D6VWR8_9CLOTHomoserineO-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=metAPE=3SV=1	tr|A0A7D6VWR8|A0A7D6VWR8_9CLOTHomoserineO-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=metAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	489.2914733886719	2	489.292559	976.570566	-0.29489	-0.00014429	-0.11707	-5.7281E-05	-0.41196	-0.00020157	489.2924862097453	60.206	1.6231	57.436	56.83	58.453	-2.7702					62	30	3	0	0	0	0.71267	1	4421	4421		40.778	3.6191	1	524080			42892	35258	35456	35479	46351	46351					0.0813435068552053
PKYKNSKL	8	Unmodified	_PKYKNSKL_					0	0	0			REV__ENSG00000198797|ENST00000361539|BRINP2	REV__ENSG00000198797|ENST00000361539|BRINP2	MULTI-MSMS	OvCa9_classI_Rep2	2	489.2912292480469	2	489.292559	976.570566	-0.29489	-0.00014429	-0.11707	-5.7281E-05	-0.41196	-0.00020157	489.2924862097453	60.206	1.6231	57.436	56.83	58.453	-2.7702					62	30	3	0	0	0	0.6962	1	4416	4416		44.117	0	1	524080	+		42893	23064	35457	35480	46352	46352					0.0813435068552053
PKYQMQEEP	9	Unmodified	_PKYQMQEEP_					0	0	0		ZBTB38|p.Y1070Wfs*9|1|0.19|ENSG00000177311|chr3:141445596-141445597|-/GG|frameshift_variant;ENSG00000177311|ENST00000321464|ZBTB38	ZBTB38|p.Y1070Wfs*9|1|0.19|ENSG00000177311|chr3:141445596-141445597|-/GG|frameshift_variant	ZBTB38|p.Y1070Wfs*9|1|0.19|ENSG00000177311|chr3:141445596-141445597|-/GG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.2998657226562	2	575.265881	1148.51721	-0.79136	-0.00045524	0.85181	0.00049002	0.060447	3.4773E-05	575.76636394403	99.072	0.20732	96.747	96.639	96.847	-2.3253					5	3	2	0	0	0	0.027462	1	8812	8812		34.173	11.13	1	8631.6			42894	7671	35458	35481	46353	46353					-0.051108148792991415
PLAAGARGR	9	Unmodified	_PLAAGARGR_					0	0	0			REV__ENST00000341184.6_1_22:39853353-39853542:+|nuORF	REV__ENST00000341184.6_1_22:39853353-39853542:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	434.7604675292969	2	434.759218	867.503883	1.7873	0.00077704	-1.822	-0.00079215	-0.034747	-1.5107E-05	434.75831214384687	139.52	2.3534	138.02	137.27	139.63	-1.4952					101	45	4	0	0	0	0.61208	1	13650	13650		30.504	0.6621	1	874370	+		42895	24634	35459	35482	46354	46354					0.06483159914284897
PLAAQRVL	8	Unmodified	_PLAAQRVL_					0	0	0		ENSG00000154134|ENST00000397801|ROBO3	ENSG00000154134|ENST00000397801|ROBO3	ENSG00000154134|ENST00000397801|ROBO3	MULTI-SECPEP	OvCa9_classI_Rep3	3	434.28814697265625	2	434.27417	866.533787	-0.6361	-0.00027624	4.4394	0.0019279	3.8033	0.0016517	434.2762290601903	85.165	1.5392	82.944	82.498	84.037	-2.2204					56	30	3	0	0	0	0.028476	1	5048	5048		83.287	0	1	262460			42896	5713	35460	35483	46355	46355					0.09518098859598467
PLAARAGRRK	10	Unmodified	_PLAARAGRRK_					0	0	0		ENST00000348165.9_1_7:156931958-156961760:+|nuORF	ENST00000348165.9_1_7:156931958-156961760:+|nuORF	ENST00000348165.9_1_7:156931958-156961760:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	548.3474731445312	2	548.346523	1094.67849	0.84752	0.00046473	-0.05417	-2.9704E-05	0.79335	0.00043503	548.34630473212	154.14	1.4394	154.14	153.78	155.22	0					75	28	4	0	0	0	0.6104	1	18064	18064		40.778	15.204	1	385030			42897	10637	35461	35484	46356	46356					0.1349416005944022
PLAARARSA	9	Unmodified	_PLAARARSA_					0	0	0		ENST00000355426.7_1_2:56149568-56150895:-|nuORF;ENST00000480016.1_1_2:56149476-56150895:-|nuORF	ENST00000355426.7_1_2:56149568-56150895:-|nuORF	ENST00000355426.7_1_2:56149568-56150895:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	456.77215576171875	2	456.772326	911.530098	-0.55209	-0.00025218	0.40157	0.00018343	-0.15052	-6.8753E-05	456.77237766888294	142.31	1.8774	142.08	141.37	143.25	-0.22697					97	37	4	0	0	0	0.5811	2	14276	14276;14307		34.173	0	1	225920			42898	10678	35462	35485	46357;46358	46357					0.07079429085740685
PLAARARSA	9	Unmodified	_PLAARARSA_					0	0	0		ENST00000355426.7_1_2:56149568-56150895:-|nuORF;ENST00000480016.1_1_2:56149476-56150895:-|nuORF	ENST00000355426.7_1_2:56149568-56150895:-|nuORF	ENST00000355426.7_1_2:56149568-56150895:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	456.7721252441406	2	456.772326	911.530098	-2.6183	-0.001196	2.5573	0.0011681	-0.061068	-2.7894E-05	456.77340273142477	142.71	1.7302	141.7	141.28	143.01	-1.0106					71	34	3	0	0	0	0.5811	1	11849	11849		34.173	1.3601	1	453300			42899	10678	35462	35485	46359	46359					0.07079429085740685
PLAARKGRAAR	11	Unmodified	_PLAARKGRAAR_					0	0	0			REV__sp|Q6SW66|UL76_HCMVMProteinUL76OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL76PE=2SV=1	REV__sp|Q6SW66|UL76_HCMVMProteinUL76OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL76PE=2SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8582153320312	2	583.86508	1165.71561	-6.9004	-0.0040289	-4.0278	-0.0023517	-10.928	-0.0063806	583.8626216517176	154.95	1.1831	153.88	153.56	154.74	-1.073					81	29	4	0	0	0	0.72459	1	13289	13289		20.947	1.8434	1	200380	+		42900	29444	35463	35486	46360	46360					0.13937831605221618
PLAASQRLTCL	11	Unmodified	_PLAASQRLTCL_					0	0	0			REV__ENST00000368445.9_1_1:154935432-154935537:-|nuORF	REV__ENST00000368445.9_1_1:154935432-154935537:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	586.82421875	2	586.82644	1171.63833	-5.6686	-0.0033265	0.76483	0.00044882	-4.9037	-0.0028776	586.8267226357335	149.07	1.5069	148.12	147.65	149.16	-0.9512					81	29	4	0	0	0	0.69455	1	12607	12607		31.53	1.0262	1	213470	+		42901	24920	35464	35487	46361	46361					0.05937432554037514
PLAATARR	8	Unmodified	_PLAATARR_					0	0	0		ENSG00000204335|ENST00000375281|SP5	ENSG00000204335|ENST00000375281|SP5	ENSG00000204335|ENST00000375281|SP5	MULTI-MSMS	OvCa9_classI_Rep3	3	428.26153564453125	2	428.261594	854.508634	-2.5112	-0.0010754	2.6852	0.00115	0.17402	7.4528E-05	428.26264584865925	144.43	1.5889	143.46	143.1	144.69	-0.97301					79	31	4	0	0	0	0.7549	1	12072	12072		24.203	5.8783	1	839380			42902	8970	35465	35488	46362	46362					0.0755604405703707
PLADEFLGRP	10	Unmodified	_PLADEFLGRP_					0	0	0			REV__ENST00000466336.5_1_6:31940188-31948320:+|nuORF	REV__ENST00000466336.5_1_6:31940188-31948320:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.327880859375	2	557.798206	1113.58186	2.0442	0.0011403	3.9713	0.0022152	6.0156	0.0033555	557.7999793326911	127.77	0.55377	127.77	127.54	128.09	0					15	11	2	0	0	0	0.026734	1	14813	14813		39.253	9.4113	1	54732	+		42903	23145	35466	35489	46363	46363					0.029611279890104925
PLADLLARPL	10	Unmodified	_PLADLLARPL_					0	0	0		nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL;nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-4|SVIL	nc|ENSG00000197321|O95425-4|SVIL	MULTI-MSMS	OvCa9_classI_Rep2	2	539.8309326171875	2	539.834591	1077.65463	-3.7173	-0.0020067	-0.65874	-0.00035561	-4.3761	-0.0023624	539.83416939196	149.54	1.4287	149.32	148.92	150.35	-0.22697					60	28	3	0	0	0	0.72319	1	15221	15221		27.882	4.8398	1	108190			42904	8700	35467	35490	46364	46364					0.11890881782437646
PLAEKLADL	9	Unmodified	_PLAEKLADL_					0	0	0			REV__tr|A0A553SLZ8|A0A553SLZ8_NIACIMBLfoldmetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_21575PE=4SV=1	REV__tr|A0A553SLZ8|A0A553SLZ8_NIACIMBLfoldmetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_21575PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	485.2825622558594	2	485.2844	968.554247	-1.9489	-0.00094577	-1.0764	-0.00052236	-3.0253	-0.0014681	485.2837680529316	35.087	1.3898	32.377	32.109	33.499	-2.7097					66	27	4	0	0	0	0.61208	1	1435	1435		30.504	0	1	549360	+		42905	30282	35468	35491	46365	46365					0.06871224728752168
PLAERLIRIM	10	Unmodified	_PLAERLIRIM_					0	0	0		nc|ENSG00000038532|Q2KHT3-2|CLEC16A;CLEC16A|p.Q832Rfs*57|1|0.03|ENSG00000038532|chr16:11126000-11126000|A/-|frameshift_variant;ENSG00000038532|ENST00000409790|CLEC16A;ENST00000487189.5_1_16:11118684-11138007:+|nuORF;ENST00000463459.1_1_16:11118735-11142283:+|nuORF	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3702392578125	2	606.368275	1210.722	-2.264	-0.0013728	4.3533	0.0026397	2.0893	0.0012669	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.47142	3	12535	12501;12535;12541		58.23	34.707	1	205770			42906	14868	35469	35492	46366;46367;46368	46367					0.12506588721726075
PLAERLIRIM	10	Unmodified	_PLAERLIRIM_					0	0	0		nc|ENSG00000038532|Q2KHT3-2|CLEC16A;CLEC16A|p.Q832Rfs*57|1|0.03|ENSG00000038532|chr16:11126000-11126000|A/-|frameshift_variant;ENSG00000038532|ENST00000409790|CLEC16A;ENST00000487189.5_1_16:11118684-11138007:+|nuORF;ENST00000463459.1_1_16:11118735-11142283:+|nuORF	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3695678710938	2	606.368275	1210.722	-0.26856	-0.00016285	2.5756	0.0015618	2.3071	0.0013989	606.369699493104	145.24	3.8933	143.8	141.64	145.53	-1.4357					226	74	4	0	0	0	0.65849	3	14236	14213;14236;14294		35.152	13.709	1	336140			42907	14868	35469	35492	46369;46370;46371	46370					0.12506588721726075
PLAERLIRIM	10	Unmodified	_PLAERLIRIM_					0	0	0		nc|ENSG00000038532|Q2KHT3-2|CLEC16A;CLEC16A|p.Q832Rfs*57|1|0.03|ENSG00000038532|chr16:11126000-11126000|A/-|frameshift_variant;ENSG00000038532|ENST00000409790|CLEC16A;ENST00000487189.5_1_16:11118684-11138007:+|nuORF;ENST00000463459.1_1_16:11118735-11142283:+|nuORF	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3697509765625	2	606.368275	1210.722	-1.3399	-0.00081245	3.5293	0.0021401	2.1895	0.0013276	606.3703052098949	148.27	2.4393	146.84	145.43	147.87	-1.4351					149	49	5	0	0	0	0.71173	1	14588	14588		29.17	5.6474	1	591330			42908	14868	35469	35492	46372	46372					0.12506588721726075
PLAERLIRIM	10	Unmodified	_PLAERLIRIM_					0	0	0		nc|ENSG00000038532|Q2KHT3-2|CLEC16A;CLEC16A|p.Q832Rfs*57|1|0.03|ENSG00000038532|chr16:11126000-11126000|A/-|frameshift_variant;ENSG00000038532|ENST00000409790|CLEC16A;ENST00000487189.5_1_16:11118684-11138007:+|nuORF;ENST00000463459.1_1_16:11118735-11142283:+|nuORF	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.37109375	2	606.368275	1210.722	-2.0217	-0.0012259	4.1724	0.00253	2.1507	0.0013041	606.3706888805716	149.57	2.6994	148.14	147.52	150.22	-1.4344					165	58	4	0	0	0	0.762	2	14749	14749;14761		23.523	1.8369	1	304910			42909	14868	35469	35492	46373;46374	46373					0.12506588721726075
PLAESERMQVL	11	Unmodified	_PLAESERMQVL_					0	0	0		nc|ENSG00000149970|Q8WXI2-5|CNKSR2;ENSG00000149970|ENST00000379510|CNKSR2;nc|ENSG00000149970|Q8WXI2-4|CNKSR2;nc|ENSG00000149970|Q8WXI2-2|CNKSR2	nc|ENSG00000149970|Q8WXI2-5|CNKSR2	nc|ENSG00000149970|Q8WXI2-5|CNKSR2	MULTI-MSMS	OvCa99_classI_Rep5	1	424.8929138183594	3	424.892067	1271.65437	-0.30334	-0.00012888	3.0885	0.0013123	2.7852	0.0011834	424.8932638467308	38.161	0.72277	38.161	37.896	38.619	0					37	15	4	0	0	0	0.59615	1	2150	2150		45.022	0.64502	1	328280			42910	5496	35470	35493	46375	46375					0.029410940002662755
PLAFGRRI	8	Unmodified	_PLAFGRRI_					0	0	0		ENST00000304921.9_1_2:3622855-3622921:+|nuORF	ENST00000304921.9_1_2:3622855-3622921:+|nuORF	ENST00000304921.9_1_2:3622855-3622921:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	465.28509521484375	2	465.287611	928.56067	-1.6358	-0.00076114	-2.9668	-0.0013804	-4.6026	-0.0021416	465.28614320640764	142.28	1.4816	142.05	141.52	143	-0.22697					68	29	3	0	0	0	0.75991	1	14298	14298		21.702	1.2205	1	102120			42911	10230	35471	35494	46376	46376					0.09353207470792313
PLAGAPEAVI	10	Unmodified	_PLAGAPEAVI_					0	0	0			REV__tr|A0A553SLF1|A0A553SLF1_NIACIL-threoninedehydrataseOS=NialliacirculansOX=1397GN=ilvAPE=3SV=1	REV__tr|A0A553SLF1|A0A553SLF1_NIACIL-threoninedehydrataseOS=NialliacirculansOX=1397GN=ilvAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	469.2626037597656	2	469.271293	936.528032	-4.2774	-0.0020072	-1.9342	-0.00090768	-6.2116	-0.0029149	469.2702774791075	155.49	0.68654	154	153.82	154.51	-1.4911					24	18	2	0	0	0	0.74484	1	15408	15408		25.45	1.2474	1	23658	+		42912	30221	35472	35495	46377	46377					0.057229555572689605
PLAGAPEAVI	10	Unmodified	_PLAGAPEAVI_					0	0	0			REV__tr|A0A553SLF1|A0A553SLF1_NIACIL-threoninedehydrataseOS=NialliacirculansOX=1397GN=ilvAPE=3SV=1	REV__tr|A0A553SLF1|A0A553SLF1_NIACIL-threoninedehydrataseOS=NialliacirculansOX=1397GN=ilvAPE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	469.271293	936.528032	1.1211	0.0005261	3.2511	0.0015257	4.3722	0.0020518	469.27313983856254	154.3	0.70444	154.3	154.12	154.83	0	0.21976	0.003925	NaN	25.45	21	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43860	+		42913	30221	35472	35495							0.057229555572689605
PLAGAPEAVI	10	Unmodified	_PLAGAPEAVI_					0	0	0			REV__tr|A0A553SLF1|A0A553SLF1_NIACIL-threoninedehydrataseOS=NialliacirculansOX=1397GN=ilvAPE=3SV=1	REV__tr|A0A553SLF1|A0A553SLF1_NIACIL-threoninedehydrataseOS=NialliacirculansOX=1397GN=ilvAPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	469.271293	936.528032	-5.3511	-0.0025111	-0.63517	-0.00029807	-5.9863	-0.0028092	469.2708490472316	155.01	0.5593	153.94	153.79	154.35	-1.073	-0.14095	0.00027751	NaN	25.45	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11641	+		42914	30221	35472	35495							0.057229555572689605
PLAGAPEAVI	10	Unmodified	_PLAGAPEAVI_					0	0	0			REV__tr|A0A553SLF1|A0A553SLF1_NIACIL-threoninedehydrataseOS=NialliacirculansOX=1397GN=ilvAPE=3SV=1	REV__tr|A0A553SLF1|A0A553SLF1_NIACIL-threoninedehydrataseOS=NialliacirculansOX=1397GN=ilvAPE=3SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	469.271293	936.528032	-4.2774	-0.0020072	-1.9342	-0.00090768	-6.2116	-0.0029149	469.2702774791075	155.49	0.68654	154	153.82	154.51	-1.4911	-0.07881	-0.00094171	NaN	25.45	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23658	+		42915	30221	35472	35495							0.057229555572689605
PLAHSKKSKAE	11	Unmodified	_PLAHSKKSKAE_					0	0	0		nc|ENSG00000102935|Q2M1K9-2|ZNF423;nc|ENSG00000102935|Q2M1K9|ZNF423;ENSG00000102935|ENST00000563137|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	nc|ENSG00000102935|Q2M1K9-2|ZNF423	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.3168334960938	2	598.343312	1194.67207	2.423	0.0014498	3.8652	0.0023127	6.2882	0.0037625	598.3448861124314	108.3	0.38382	108.3	108.16	108.54	0					13	8	2	0	0	0	0.025701	1	12268	12268		16.717	0	1	51560			42916	2271	35473	35496	46378	46378					0.08252177317444875
PLAIAAASK	9	Unmodified	_PLAIAAASK_					0	0	0			REV__nc|ENSG00000198589|P50851-2|LRBA	REV__nc|ENSG00000198589|P50851-2|LRBA	MULTI-MSMS	OvCa9_classI_Rep2	2	421.25933837890625	2	421.260728	840.506903	0.1688	7.111E-05	-3.1201	-0.0013144	-2.9513	-0.0012433	421.2592965587955	134.89	1.4682	134.66	133.66	135.13	-0.22696					55	29	3	0	0	0	0.70685	1	13326	13326		15.642	1.8665	1	378840	+		42917	23032	35474	35497	46379	46379					0.08026990248424681
PLAIQQIKAVS	11	Unmodified	_PLAIQQIKAVS_					0	0	0		ENSG00000178295|ENST00000381254|GEN1	ENSG00000178295|ENST00000381254|GEN1	ENSG00000178295|ENST00000381254|GEN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3565063476562	2	584.358431	1166.70231	-0.5033	-0.0002941	-2.654	-0.0015509	-3.1573	-0.001845	584.3567763295431	142.42	4.015	140.98	138.81	142.83	-1.4427					242	77	4	0	0	0	0.69808	1	13885	13885		30.318	0	1	214670			42918	7746	35475	35498	46380	46380					0.12562535982578993
PLAIWLFIFN	10	Unmodified	_PLAIWLFIFN_					0	0	0		ENST00000565089.5_1_16:28943294-28944055:+|nuORF;ENSG00000177455|ENST00000538922|CD19;nc|ENSG00000177455|P15391-2|CD19	ENST00000565089.5_1_16:28943294-28944055:+|nuORF	ENST00000565089.5_1_16:28943294-28944055:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	617.3491821289062	2	617.35516	1232.69577	-4.0098	-0.0024755	-3.9529	-0.0024404	-7.9627	-0.0049158	617.3525047754998	151.58	1.1368	151.35	150.94	152.08	-0.22696					56	22	4	0	0	0	0.72319	1	15408	15408		27.882	4.3595	1	109310			42919	7681	35476	35499	46381	46381					0.0887264282189335
PLAKDKTLIVN	11	Unmodified	_PLAKDKTLIVN_					0	0	0			REV__nc|ENSG00000047849|P27816-2|MAP4	REV__nc|ENSG00000047849|P27816-2|MAP4	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3699340820312	2	606.371538	1210.72852	-0.26856	-0.00016285	-2.8049	-0.0017008	-3.0734	-0.0018636	606.369699493104	145.24	3.8933	143.8	141.64	145.53	-1.4357					226	74	4	0	0	0	0.70142	1	14375	14375		29.17	1.0886	1	336140	+		42920	16662	35477	35500	46382	46382					0.13158805154080255
PLAKHRLV	8	Unmodified	_PLAKHRLV_					0	0	0		TRIM9|p.L284Tfs*73|1|0.08|ENSG00000100505|chr14:51025333-51025334|-/GAAGAAAAGAAGAGAAAACTGTGGCCTGT|frameshift_variant;nc|ENSG00000100505|Q9C026-5|TRIM9;nc|ENSG00000100505|Q9C026|TRIM9;ENSG00000100505|ENST00000684578|TRIM9;nc|ENSG00000100505|Q9C026-4|TRIM9	TRIM9|p.L284Tfs*73|1|0.08|ENSG00000100505|chr14:51025333-51025334|-/GAAGAAAAGAAGAGAAAACTGTGGCCTGT|frameshift_variant	TRIM9|p.L284Tfs*73|1|0.08|ENSG00000100505|chr14:51025333-51025334|-/GAAGAAAAGAAGAGAAAACTGTGGCCTGT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	467.2996826171875	2	467.303262	932.59197	-2.6989	-0.0012612	-1.7541	-0.00081971	-4.453	-0.0020809	467.3023498206503	147.52	1.7467	147.29	146.82	148.57	-0.22696					88	34	4	0	0	0	0.75915	1	14902	14902		20.482	4.8456	1	302680			42921	2079	35478	35501	46383	46383					0.12297780504900402
PLAKVISSA	9	Unmodified	_PLAKVISSA_					0	0	0		chr8:144791307-144791873|206|383.16|0.22|10.79|-|0|RPL8,None|1	chr8:144791307-144791873|206|383.16|0.22|10.79|-|0|RPL8,None|1	chr8:144791307-144791873|206|383.16|0.22|10.79|-|0|RPL8,None|1	MULTI-MSMS	OvCa9_classI_Rep2	2	443.27239990234375	2	443.273835	884.533118	0.83529	0.00037026	-3.8589	-0.0017105	-3.0236	-0.0013403	443.27205335230417	138.39	1.523	138.16	137.68	139.21	-0.22696					79	30	3	0	0	0	0.69123	1	13798	13798		20.947	1.587	1	138730			42922	543	35479	35502	46384	46384					0.08623259419903206
PLALGRKPDL	10	Unmodified	_PLALGRKPDL_					0	0	0			REV__ENSG00000168754|ENST00000490605|FAM178B	REV__ENSG00000168754|ENST00000490605|FAM178B	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.33203125	2	540.332216	1078.64988	0.34656	0.00018726	-4.1131	-0.0022225	-3.7666	-0.0020352	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.6349	1	13608	13608		37.812	2.6595	1	342200	+		42923	21397	35480	35503	46385	46385					0.11369997639667417
PLALGRLHG	9	Unmodified	_PLALGRLHG_					0	0	0			REV__ENST00000308423.6_1_17:41004568-41004637:+|nuORF	REV__ENST00000308423.6_1_17:41004568-41004637:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	468.2706604003906	2	467.285069	932.555585	1.9865	0.00092828	1.0448	0.00048823	3.0314	0.0014165	467.285363698837	74.86	0.24405	74.86	74.761	75.005	0					7	5	2	0	0	0	0.027462	1	7422	7422		35.201	25.73	1	78965	+		42924	24317	35481	35504	46386	46386					0.08660903608176795
PLALKTLTYTG	11	Unmodified	_PLALKTLTYTG_					0	0	0			REV__ENSG00000087076|ENST00000263278|HSD17B14	REV__ENSG00000087076|ENST00000263278|HSD17B14	MULTI-MSMS	OvCa9_classI_Rep2	2	589.343017578125	2	589.344989	1176.67542	-3.0463	-0.0017953	-0.38122	-0.00022467	-3.4276	-0.00202	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.72466	1	14824	14824		19.997	0.6368	1	272220	+		42925	17155	35482	35505	46387	46387					0.09415427371413898
PLALKTLTYTG	11	Unmodified	_PLALKTLTYTG_					0	0	0			REV__ENSG00000087076|ENST00000263278|HSD17B14	REV__ENSG00000087076|ENST00000263278|HSD17B14	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3417358398438	2	589.344989	1176.67542	-4.3129	-0.0025418	0.73104	0.00043083	-3.5818	-0.0021109	589.3453728975387	144.79	3.9151	143.81	141.71	145.63	-0.97299					242	78	5	0	0	0	0.71498	1	12164	12164		24.519	3.5723	1	192050	+		42926	17155	35482	35505	46388	46388					0.09415427371413898
PLALLSRNL	9	Unmodified	_PLALLSRNL_					0	0	0		ENST00000532896.5_1_19:18304624-18307257:+|nuORF	ENST00000532896.5_1_19:18304624-18307257:+|nuORF	ENST00000532896.5_1_19:18304624-18307257:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	498.81304931640625	2	498.813659	995.612765	-0.10557	-5.2658E-05	-0.22118	-0.00011033	-0.32674	-0.00016298	498.8134286419306	107.86	2.1308	106.67	106.38	108.51	-1.1978					94	40	3	0	0	0	0.42676	1	7735	7735		49.442	0	1	572750			42927	13328	35483	35506	46389	46389					0.114783260938907
PLALPPRLQHP	11	Unmodified	_PLALPPRLQHP_					0	0	0		ENST00000237841.5_1_12:3948629-3949796:+|nuORF	ENST00000237841.5_1_12:3948629-3949796:+|nuORF	ENST00000237841.5_1_12:3948629-3949796:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8693237304688	2	619.87204	1237.72953	-3.6059	-0.0022352	-0.65337	-0.00040501	-4.2593	-0.0026402	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.72459	1	12803	12803		20.947	0	1	664560			42928	9747	35484	35507	46390	46390					0.1201706431365892
PLALRLSVA	9	Unmodified	_PLALRLSVA_					0	0	0			REV__ENSG00000145623|ENST00000274276|OSMR	REV__ENSG00000145623|ENST00000274276|OSMR	MULTI-MSMS	OvCa9_classI_Rep2	2	470.3028869628906	2	470.302927	938.591301	0.03473	1.6333E-05	0.021763	1.0235E-05	0.056492	2.6569E-05	470.30279388805116	110.02	2.3722	109.85	108.97	111.34	-0.17237					98	47	4	0	0	0	0.28934	1	10323	10323		64.207	2.0999	1	333940	+		42929	19971	35485	35508	46391	46391					0.11954941065175717
PLALSVIITL	10	Unmodified	_PLALSVIITL_					0	0	0		ENST00000563601.1_1_10:17685748-17685853:-|nuORF	ENST00000563601.1_1_10:17685748-17685853:-|nuORF	ENST00000563601.1_1_10:17685748-17685853:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3399047851562	2	520.341718	1038.66888	-0.11114	-5.783E-05	-2.7481	-0.0014299	-2.8592	-0.0014878	520.3401542748645	39.812	1.4362	37.102	36.805	38.241	-2.7097					67	28	4	0	0	0	0.69986	1	1986	1986		30.504	1.3541	1	306910			42930	13789	35486	35509	46392	46392					0.15109534210705533
PLALVRPFGH	10	Unmodified	_PLALVRPFGH_					0	0	0			REV__ENST00000306085.10_3_7:100728844-100730655:+|nuORF	REV__ENST00000306085.10_3_7:100728844-100730655:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.83203125	2	553.827101	1105.63965	1.4062	0.00077877	3.9255	0.0021741	5.3317	0.0029528	553.8291816775361	139.45	3.0735	137.95	136.76	139.84	-1.4952					150	61	3	0	0	0	0.69986	1	13592	13592		30.504	2.6214	1	110800	+		42931	24293	35487	35510	46393	46393					0.09105434705088555
PLANVPSLSTE	11	Unmodified	_PLANVPSLSTE_					0	0	0			REV__nc|ENSG00000157927|Q96JH8-1|RADIL	REV__nc|ENSG00000157927|Q96JH8-1|RADIL	MULTI-SECPEP	OvCa9_classI_Rep2	2	564.8276977539062	2	564.300778	1126.587	-0.70439	-0.00039749	1.3301	0.00075056	0.62569	0.00035308	564.3013971014764	55.882	0.59437	53.078	52.928	53.523	-2.804					14	11	2	0	0	0	0.025277	1	3911	3911		47.96	7.1814	1	14790	+		42932	20541	35488	35511	46394	46394					0.02877387060948422
PLANVPSLSTE	11	Unmodified	_PLANVPSLSTE_					0	0	0			REV__nc|ENSG00000157927|Q96JH8-1|RADIL	REV__nc|ENSG00000157927|Q96JH8-1|RADIL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.8289184570312	2	564.300778	1126.587	1.2007	0.00067757	-0.85214	-0.00048086	0.34858	0.0001967	564.299933191484	56.378	0.8087	53.084	52.819	53.628	-3.2944					23	15	2	0	0	0	0.025277	1	3613	3613		56.434	38.172	1	34811	+		42933	20541	35488	35511	46395	46395					0.02877387060948422
PLAPLLSGT	9	Unmodified	_PLAPLLSGT_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-MSMS	OvCa9_classI_Rep3	3	434.759033203125	2	434.760561	867.506569	-1.3377	-0.00058158	-1.6289	-0.00070818	-2.9666	-0.0012898	434.7597358333452	139.11	1.8707	138.05	137.63	139.51	-1.0595					91	37	4	0	0	0	0.6653	1	11449	11449		24.203	3.7209	1	610970	+		42934	17073	35489	35512	46396	46396					0.06751570528570028
PLAPPFLRGR	10	Unmodified	_PLAPPFLRGR_					0	0	0			REV__ENST00000479961.1_3_15:80215821-80215968:-|nuORF	REV__ENST00000479961.1_3_15:80215821-80215968:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3435668945312	2	562.340375	1122.6662	1.2434	0.00069921	4.1981	0.0023608	5.4415	0.00306	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.73378	1	14010	14010		26.693	3.6504	1	683710	+		42935	26446	35490	35513	46397	46397					0.10977123596398997
PLAPQDPLPV	10	Unmodified	_PLAPQDPLPV_					0	0	0			REV__ENST00000343125.8_1_17:72691060-72691132:-|nuORF	REV__ENST00000343125.8_1_17:72691060-72691132:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8171997070312	2	523.797675	1045.5808	-0.46515	-0.00024365	-2.4663	-0.0012918	-2.9315	-0.0015355	523.7963305444526	30.707	0.49503	30.707	30.236	30.731	0					12	9	2	0	0	0	0.026802	1	1153	1153		42.396	12.078	1	86410	+		42936	24667	35491	35514	46398	46398					0.059829136200733046
PLAPRGRRPS	10	Unmodified	_PLAPRGRRPS_					0	0	0			REV__nc|ENSG00000115266|O95996-2|APC2	REV__nc|ENSG00000115266|O95996-2|APC2	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8307495117188	2	553.830706	1105.64686	-2.2198	-0.0012294	1.0181	0.00056387	-1.2017	-0.00066553	553.8311075714116	139.08	3.9663	138.02	135.98	139.95	-1.0595					202	80	4	0	0	0	0.74374	1	11498	11498		25.574	0.12388	1	74733	+		42937	18228	35492	35515	46399	46399					0.09826167305527633
PLAPVPPPKK	10	Unmodified	_PLAPVPPPKK_					0	0	0			REV__ENST00000572021.5_1_17:54969063-54989474:-|nuORF	REV__ENST00000572021.5_1_17:54969063-54989474:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.8015747070312	2	522.334227	1042.6539	-0.79004	-0.00041266	-2.9044	-0.0015171	-3.6944	-0.0019297	522.3327151911026	33.657	0.39499	30.947	30.823	31.218	-2.7097					11	7	2	0	0	0	0.027117	1	1218	1218		23.042	0	1	33823	+		42938	18527	35493	35516	46400	46400					0.13428087133365807
PLAPVRILAMN	11	Unmodified	_PLAPVRILAMN_					0	0	0		HEATR1|p.P2064Hfs*2|1|0.04|ENSG00000119285|chr1:236553627-236553627|G/-|frameshift_variant;ENSG00000119285|ENST00000366582|HEATR1;HEATR1|p.G1956Wfs*9|1|0.04|ENSG00000119285|chr1:236555353-236555354|-/A|frameshift_variant	HEATR1|p.P2064Hfs*2|1|0.04|ENSG00000119285|chr1:236553627-236553627|G/-|frameshift_variant	HEATR1|p.P2064Hfs*2|1|0.04|ENSG00000119285|chr1:236553627-236553627|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.856201171875	2	597.855001	1193.69545	-0.38237	-0.0002286	2.6587	0.0015895	2.2763	0.0013609	597.8564103488146	145.14	4.0194	143.71	141.51	145.53	-1.4357					229	77	4	0	0	0	0.69081	1	14301	14301		32.812	4.9302	1	217250			42939	3350	35494	35517	46401	46401					0.10634899830415634
PLAQPLPNL	9	Unmodified	_PLAQPLPNL_					0	0	0			REV__ENST00000550178.1_1_12:120934168-120934219:+|nuORF	REV__ENST00000550178.1_1_12:120934168-120934219:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.2803955078125	2	481.78711	961.559667	-0.25304	-0.00012191	-3.1125	-0.0014996	-3.3656	-0.0016215	481.7860652627077	77.767	0.6802	74.951	74.825	75.506	-2.8165					16	13	2	0	0	0	0.027441	1	6268	6268		45.952	0	1	26513	+		42940	27467	35495	35518	46402	46402					0.07734948311224343
PLAQPLQLVQ	10	Unmodified	_PLAQPLQLVQ_					0	0	0			REV__ENSG00000113555|ENST00000231484|PCDH12	REV__ENSG00000113555|ENST00000231484|PCDH12	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8299560546875	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.76627	1	14093	14093		23.042	0	1	245610	+		42941	18155	35496	35519	46403	46403					0.10094577919812764
PLARAYSFW	9	Unmodified	_PLARAYSFW_					0	0	0		ENSG00000006283|ENST00000359106|CACNA1G;nc|ENSG00000006283|O43497-8|CACNA1G;nc|ENSG00000006283|O43497-9|CACNA1G;nc|ENSG00000006283|O43497-13|CACNA1G;nc|ENSG00000006283|O43497-6|CACNA1G;nc|ENSG00000006283|O43497-17|CACNA1G;nc|ENSG00000006283|O43497-11|CACNA1G;nc|ENSG00000006283|O43497-25|CACNA1G;nc|ENSG00000006283|O43497-20|CACNA1G;nc|ENSG00000006283|O43497-15|CACNA1G;nc|ENSG00000006283|O43497-10|CACNA1G;nc|ENSG00000006283|O43497-16|CACNA1G;nc|ENSG00000006283|O43497-7|CACNA1G;nc|ENSG00000006283|O43497-12|CACNA1G;nc|ENSG00000006283|O43497-33|CACNA1G;nc|ENSG00000006283|O43497-4|CACNA1G;nc|ENSG00000006283|O43497-21|CACNA1G;nc|ENSG00000006283|O43497-34|CACNA1G;nc|ENSG00000006283|O43497-35|CACNA1G;nc|ENSG00000006283|O43497-36|CACNA1G;nc|ENSG00000006283|O43497-3|CACNA1G;nc|ENSG00000006283|O43497-26|CACNA1G;nc|ENSG00000006283|O43497-23|CACNA1G;nc|ENSG00000006283|O43497-22|CACNA1G;nc|ENSG00000006283|O43497-24|CACNA1G;nc|ENSG00000006283|O43497-2|CACNA1G	ENSG00000006283|ENST00000359106|CACNA1G	ENSG00000006283|ENST00000359106|CACNA1G	MSMS	OvCa99_classI_Rep5	1	555.790283203125	2	555.790184	1109.56581	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.05	1	117.05	116.55	117.55	0								0	0	0	0.16727	1	13402	13402		58.782	0	1				42942	875	35497	35520	46404	46404					0.015414665427442742
PLARHQPL	8	Unmodified	_PLARHQPL_					0	0	0			REV__nc|ENSG00000108840|Q9UQL6-2|HDAC5	REV__nc|ENSG00000108840|Q9UQL6-2|HDAC5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.75018310546875	2	466.277244	930.539935	-0.17999	-8.3926E-05	-1.8754	-0.00087447	-2.0554	-0.0009584	466.27593072206196	58.433	0.65044	55.041	54.852	55.502	-3.392					14	12	2	0	0	0	0.028476	1	3844	3844		50.025	11.218	1	17652	+		42943	17907	35498	35521	46405	46405					0.07188617091128435
PLARLNKVP	9	Unmodified	_PLARLNKVP_					0	0	0		HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|371|2|anti-sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|371|2|anti-sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|371|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.3194885253906	2	504.321651	1006.62875	-0.94062	-0.00047438	-3.332	-0.0016804	-4.2726	-0.0021548	504.3198291935092	144.23	1.5675	142.79	142.43	143.99	-1.4357					72	29	4	0	0	0	0.65476	1	14152	14152		25.45	6.0902	1	140800			42944	14405	35499	35522	46406	46406					0.12570032330791037
PLARPALLLL	10	Unmodified	_PLARPALLLL_					0	0	0		ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	MULTI-MSMS	OvCa9_classI_Rep2	2	538.8630981445312	2	538.863152	1075.71175	-0.23326	-0.0001257	-0.99858	-0.0005381	-1.2318	-0.00066379	538.862877379651	131.84	7.1203	131.62	131.3	138.42	-0.22697					401	145	6	0	0	0	0.58282	3	13193	13193;13321;13567		44.117	1.7207	1	12803000			42945	8139	35500	35523	46407;46408;46409	46407					0.17692349058802392
PLARPALLLL	10	Unmodified	_PLARPALLLL_					0	0	0		ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	MULTI-MSMS	OvCa9_classI_Rep3	3	538.86376953125	2	538.863152	1075.71175	0.50313	0.00027112	-1.3946	-0.0007515	-0.89148	-0.00048038	538.8625358740957	133.13	11.263	132	131.63	142.9	-1.1249					494	228	5	0	0	0	0.43592	2	11004	10832;11004		63.306	9.9548	1	10229000			42946	8139	35500	35523	46410;46411	46411					0.17692349058802392
PLARPALLLL	10	Unmodified	_PLARPALLLL_					0	0	0		ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.8618774414062	2	538.863152	1075.71175	2.6703	0.0014389	-4.1829	-0.002254	-1.5125	-0.00081505	538.8612720845362	133.45	7.6689	131.93	131.41	139.08	-1.5257					434	157	6	0	0	0	0.62668	1	13319	13319		38.806	1.647	1	17348000			42947	8139	35500	35523	46412	46412					0.17692349058802392
PLARTRPVSPQ	11	Unmodified	_PLARTRPVSPQ_					0	0	0		ENST00000604104.1_1_9:98268881-98269040:+|nuORF	ENST00000604104.1_1_9:98268881-98269040:+|nuORF	ENST00000604104.1_1_9:98268881-98269040:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3546142578125	2	611.356754	1220.69895	-2.725	-0.001666	1.4566	0.0008905	-1.2684	-0.00077546	611.3575283211214	150.83	4.6872	149.39	148.02	152.71	-1.4344					404	109	6	0	0	0	0.72064	1	14828	14828		22.58	0	1	435030			42948	14262	35501	35524	46413	46413					0.09743285928607293
PLASRFPPG	9	Unmodified	_PLASRFPPG_					0	0	0		ENST00000580580.1_1_18:74694183-74696045:+|nuORF	ENST00000580580.1_1_18:74694183-74696045:+|nuORF	ENST00000580580.1_1_18:74694183-74696045:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	470.79736328125	2	471.263802	940.513051	0.40064	0.0001888	1.3177	0.00062098	1.7183	0.00080979	471.263248072643	78.792	1.0953	76.442	76.152	77.247	-2.3499					43	21	3	0	0	0	0.027462	1	4305	4305		33.516	1.5607	1	63681			42949	13987	35502	35525	46414	46414					0.04041508479951972
PLATKRIPDP	10	Unmodified	_PLATKRIPDP_					0	0	0		nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-MSMS	OvCa9_classI_Rep2	2	554.3284912109375	2	554.329673	1106.64479	1.9064	0.0010568	-2.1941	-0.0012162	-0.28768	-0.00015947	554.3283351859908	91.163	1.5236	89.928	89.538	91.061	-1.2355					74	28	4	0	0	0	0.48198	1	8083	8083		56.721	10.749	1	384730			42950	7235	35503	35526	46415	46415					0.09573693777042536
PLATSRRPRP	10	Unmodified	_PLATSRRPRP_					0	0	0			REV__nc|ENSG00000204183|Q5U4N7|GDF5-AS1	REV__nc|ENSG00000204183|Q5U4N7|GDF5-AS1	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8434448242188	2	575.843813	1149.67307	-3.1773	-0.0018296	2.254	0.0012979	-0.92334	-0.0005317	575.8447773729116	141.87	3.8997	140.86	138.96	142.86	-1.0106					243	78	6	0	0	0	0.72319	1	11768	11768		27.882	2.3082	1	129610	+		42951	29100	35504	35527	46416	46416					0.10422436476960684
PLAVLPTTG	9	Unmodified	_PLAVLPTTG_					0	0	0			REV__ENSG00000225968|ENST00000424383|ELFN1	REV__ENSG00000225968|ENST00000424383|ELFN1	MULTI-MSMS	OvCa9_classI_Rep2	2	434.7593078613281	2	434.760561	867.506569	-0.54476	-0.00023684	-2.3576	-0.001025	-2.9023	-0.0012618	434.7594502813862	138.35	2.0585	138.12	137.54	139.6	-0.22697					104	41	4	0	0	0	0.65476	1	13894	13894		25.45	1.2474	1	279250	+		42952	23367	35505	35528	46417	46417					0.06751570528558659
PLCCLGPVVP	10	Unmodified	_PLCCLGPVVP_					0	0	0			REV__ENST00000546151.5_1_11:61120480-61124010:-|nuORF	REV__ENST00000546151.5_1_11:61120480-61124010:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.8169860839844	2	499.264099	996.513645	1.4877	0.00074276	-1.2213	-0.00060973	0.26646	0.00013303	499.262963077019	108.98	0.52499	108.98	108.89	109.41	0					12	11	2	0	0	0	0.026839	1	12334	12334		19.36	0	1	207080	+		42953	27346	35506	35529	46418	46418					0.015248438131266084
PLCRQTFF	8	Unmodified	_PLCRQTFF_					0	0	0		ENST00000524670.5_1_11:118868877-118869042:+|nuORF;ENST00000534656.2_1_11:118868886-118869820:+|nuORF;ENSG00000186166|ENST00000334418|CENATAC	ENST00000524670.5_1_11:118868877-118869042:+|nuORF	ENST00000524670.5_1_11:118868877-118869042:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	506.2608642578125	2	506.257662	1010.50077	-0.008233	-4.168E-06	1.7501	0.00088598	1.7418	0.00088181	506.2584999623091	80.238	2.521	78.542	77.819	80.34	-1.6951					182	49	6	0	0	0	0.71369	1	6784	6784		40.573	4.1259	1	1626600			42954	8319	35507	35530	46419	46419					-0.00405851254731715
PLCRQTFF	8	Unmodified	_PLCRQTFF_					0	0	0		ENST00000524670.5_1_11:118868877-118869042:+|nuORF;ENST00000534656.2_1_11:118868886-118869820:+|nuORF;ENSG00000186166|ENST00000334418|CENATAC	ENST00000524670.5_1_11:118868877-118869042:+|nuORF	ENST00000524670.5_1_11:118868877-118869042:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.26409912109375	2	506.257662	1010.50077	-1.11	-0.00056195	2.8365	0.001436	1.7265	0.00087406	506.2590571991676	81.025	1.8956	78.314	77.81	79.706	-2.7106					142	38	6	0	0	0	0.67745	1	6681	6681		47.916	1.9636	1	3738200			42955	8319	35507	35530	46420	46420					-0.00405851254731715
PLCTRPNLTH	10	Unmodified	_PLCTRPNLTH_					0	0	0			REV__ENSG00000044090|ENST00000265348|CUL7	REV__ENSG00000044090|ENST00000265348|CUL7	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.8377685546875	2	576.303133	1150.59171	-0.86717	-0.00049975	-2.2451	-0.0012939	-3.1123	-0.0017936	576.3014945371802	42.367	2.3191	42.367	41.375	43.694	0					79	53	3	0	0	0	0.027145	1	2658	2658		31.53	13.205	1	193900	+		42956	16646	35508	35531	46421	46421					0.022439927227196677
PLDAALDHLRL	11	Unmodified	_PLDAALDHLRL_					0	0	0		nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A	nc|ENSG00000130294|Q12756|KIF1A	nc|ENSG00000130294|Q12756|KIF1A	MULTI-MSMS	OvCa99_classI_Rep5	1	617.3519287109375	2	617.351137	1232.68772	0.90944	0.00056144	-1.0086	-0.00062264	-0.099131	-6.1199E-05	617.3503798864875	156.47	1.4576	156.47	156.04	157.5	0					89	28	5	0	0	0	0.60323	1	18314	18314		44.377	7.9304	1	1303300			42957	3976	35509	35532	46422	46422					0.08068463834456452
PLDIITILL	9	Unmodified	_PLDIITILL_					0	0	0			REV__tr|A0A553SRC7|A0A553SRC7_NIACISulfateABCtransporterpermeasesubunitCysWOS=NialliacirculansOX=1397GN=cysWPE=4SV=1	REV__tr|A0A553SRC7|A0A553SRC7_NIACISulfateABCtransporterpermeasesubunitCysWOS=NialliacirculansOX=1397GN=cysWPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.2585754394531	2	505.828443	1009.64233	-0.048499	-2.4532E-05	-3.3877	-0.0017136	-3.4362	-0.0017381	505.8265666421268	79.949	1.044	78.254	77.923	78.967	-1.6951					57	20	4	0	0	0	0.027462	1	6748	6748		40.573	0	1	143330	+		42958	30719	35510	35533	46423	46423					0.13789845319377037
PLDIVKDL	8	Unmodified	_PLDIVKDL_					0	0	0			REV__nc|ENSG00000177707|Q9NQS3-3|NECTIN3	REV__nc|ENSG00000177707|Q9NQS3-3|NECTIN3	MULTI-MSMS	OvCa9_classI_Rep3	3	456.7712707519531	2	456.773668	911.532783	-1.4978	-0.00068416	-1.3282	-0.00060667	-2.826	-0.0012908	456.77287635868555	138.2	0.73259	137.14	136.85	137.59	-1.0595					26	14	3	0	0	0	0.74992	1	11287	11287		26.693	2.4902	1	25128	+		42959	29023	35511	35534	46424	46424					0.07347839700048553
PLDKKRKL	8	Unmodified	_PLDKKRKL_					0	0	0		ENST00000317995.4_1_8:61102445-61121314:-|nuORF	ENST00000317995.4_1_8:61102445-61121314:-|nuORF	ENST00000317995.4_1_8:61102445-61121314:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	499.3312072753906	2	499.329476	996.6444	-0.46158	-0.00023048	0.008489	4.2388E-06	-0.45309	-0.00022624	499.32931144472104	58.935	0.4646	58.935	58.655	59.12	0					31	11	3	0	0	0	0.59148	1	5060	5060		65.803	13.504	1	3964500			42960	10359	35512	35535	46425	46425					0.1459431884784408
PLDKLTINAPL	11	Unmodified	_PLDKLTINAPL_					0	0	0			REV__ENSG00000111670|ENST00000299314|GNPTAB	REV__ENSG00000111670|ENST00000299314|GNPTAB	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8561401367188	2	597.858264	1193.70197	-2.7036	-0.0016164	-0.53743	-0.00032131	-3.241	-0.0019377	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.68757	3	12636	12451;12458;12636		33.922	4.7721	1	591030	+		42961	18045	35513	35536	46426;46427;46428	46428					0.11287116262769814
PLDLITIEKQI	11	Unmodified	_PLDLITIEKQI_					0	0	0		ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8824462890625	2	641.884478	1281.7544	-3.6311	-0.0023307	0.70501	0.00045254	-2.9261	-0.0018782	641.8847801872174	153.39	4.0845	151.94	150.68	154.77	-1.4516					420	106	6	0	0	0	0.68757	1	15250	15250		33.922	3.6039	1	809780			42962	3185	35514	35537	46429	46429					0.12479654605704127
PLDLLVMKLSH	11	Unmodified	_PLDLLVMKLSH_					0	0	0			REV__ENSG00000141252|ENST00000437048|VPS53	REV__ENSG00000141252|ENST00000437048|VPS53	MULTI-SECPEP	OvCa9_classI_Rep2	2	421.7582702636719	3	422.581053	1264.72133	1.3031	0.00055067	-0.88389	-0.00037351	0.41923	0.00017716	422.5805473888915	29.641	0.38089	26.931	26.732	27.113	-2.7097					12	7	2	0	0	0	0.026033	1	716	716		35.178	0	1	14574	+		42963	19721	35515	35538	46430	46430					0.09955749282016768
PLDPLYSPV	9	Unmodified	_PLDPLYSPV_					0	0	0			REV__ENST00000538033.2_1_2:114353729-114354265:+|nuORF	REV__ENST00000538033.2_1_2:114353729-114354265:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	500.7675476074219	2	500.771126	999.527698	-4.1562	-0.0020813	-0.73591	-0.00036852	-4.8921	-0.0024498	500.7707729923443	152.95	0.70287	152.72	152.48	153.19	-0.22697					25	15	2	0	0	0	0.65476	1	15555	15555		25.45	0	1	13583	+		42964	22233	35516	35539	46431	46431					0.02791535837422998
PLDPLYSPV	9	Unmodified	_PLDPLYSPV_					0	0	0			REV__ENST00000538033.2_1_2:114353729-114354265:+|nuORF	REV__ENST00000538033.2_1_2:114353729-114354265:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	500.771126	999.527698	-4.1562	-0.0020813	-0.73591	-0.00036852	-4.8921	-0.0024498	500.7707729923443	152.95	0.70287	152.72	152.48	153.19	-0.22697	0.16348	-0.00023772	NaN	25.45	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13583	+		42965	22233	35516	35539							0.02791535837422998
PLDPLYSPV	9	Unmodified	_PLDPLYSPV_					0	0	0			REV__ENST00000538033.2_1_2:114353729-114354265:+|nuORF	REV__ENST00000538033.2_1_2:114353729-114354265:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	500.771126	999.527698	-5.555	-0.0027818	0.65462	0.00032781	-4.9004	-0.002454	500.7715480560332	153.47	0.91898	152.46	151.95	152.87	-1.0076	-0.1024	0.001155	NaN	25.45	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21186	+		42966	22233	35516	35539							0.02791535837422998
PLDRETSII	9	Unmodified	_PLDRETSII_					0	0	0			REV__tr|A0A7D6ZWH3|A0A7D6ZWH3_9CLOTGlucose-1-phosphatethymidylyltransferaseOS=ClostridiumintestinaleOX=36845GN=rfbAPE=3SV=1	REV__tr|A0A7D6ZWH3|A0A7D6ZWH3_9CLOTGlucose-1-phosphatethymidylyltransferaseOS=ClostridiumintestinaleOX=36845GN=rfbAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.291259765625	2	522.290214	1042.56587	-1.2508	-0.0006533	1.4874	0.00077685	0.23656	0.00012355	522.2908820646427	92.552	1.8579	90.017	89.218	91.076	-2.5358					97	36	4	0	0	0	0.1804	1	8037	8037		79.713	1.4488	1	576150	+		42967	32287	35517	35540	46432	46432					0.046294217521108294
PLDSFFVH	8	Unmodified	_PLDSFFVH_					0	0	0			REV__nc|ENSG00000166762|Q96P56-3|CATSPER2	REV__nc|ENSG00000166762|Q96P56-3|CATSPER2	MULTI-SECPEP	OvCa9_classI_Rep2	2	481.7584228515625	2	481.242535	960.470518	-1.4391	-0.00069258	-3.7339	-0.0017969	-5.173	-0.0024895	481.2408531056407	38.786	0.49511	36.076	35.915	36.41	-2.7097					12	9	2	0	0	0	0.028476	1	1824	1824		15.636	0	1	15788	+		42968	21218	35518	35541	46433	46433					-0.011298866482775338
PLEFPVVAHG	10	Unmodified	_PLEFPVVAHG_					0	0	0		ENST00000268489.9_1_16:72994068-73081865:-|nuORF	ENST00000268489.9_1_16:72994068-73081865:-|nuORF	ENST00000268489.9_1_16:72994068-73081865:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.3336181640625	2	533.290017	1064.56548	-1.9456	-0.0010376	-2.5442	-0.0013568	-4.4898	-0.0023944	533.2886626756799	42.172	0.60665	39.191	39.011	39.618	-2.9804					22	11	2	0	0	0	0.026939	1	1966	1966		24.203	0	1	69255			42969	9974	35519	35542	46434	46434					0.03578046822894976
PLEGIVSLP	9	Unmodified	_PLEGIVSLP_					0	0	0		ENSG00000079112|ENST00000027335|CDH17	ENSG00000079112|ENST00000027335|CDH17	ENSG00000079112|ENST00000027335|CDH17	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.77252197265625	2	462.773668	923.532783	0.22356	0.00010346	-3.8895	-0.0018	-3.666	-0.0016965	462.7719192791278	37.709	0.99509	34.816	34.442	35.437	-2.8925					62	19	4	0	0	0	0.53957	1	1394	1394		38.806	1.647	1	3768700			42970	1603	35520	35543	46435	46435					0.06795839700043871
PLEHTVSLE	9	Unmodified	_PLEHTVSLE_					0	0	0			REV__ENST00000343122.7_2_6:90916378-91006337:-|nuORF	REV__ENST00000343122.7_2_6:90916378-91006337:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	512.7705078125	2	512.769114	1023.52368	2.0184	0.001035	0.18747	9.6128E-05	2.2059	0.0011311	512.7689798226966	100.12	0.67277	100.12	99.856	100.53	0					31	15	3	0	0	0	0.48324	1	11096	11096		44.117	1.7207	1	934040	+		42971	24666	35521	35544	46436	46436					0.012854463437065533
PLEHTVSLE	9	Unmodified	_PLEHTVSLE_					0	0	0			REV__ENST00000343122.7_2_6:90916378-91006337:-|nuORF	REV__ENST00000343122.7_2_6:90916378-91006337:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	512.769114	1023.52368	2.0184	0.001035	0.18747	9.6128E-05	2.2059	0.0011311	512.7689798226966	100.12	0.67277	100.12	99.856	100.53	0	0	0	NaN	44.117	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	934040	+		42972	24666	35521	35544							0.012854463437065533
PLEIILHL	8	Unmodified	_PLEIILHL_					0	0	0		ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	ENSG00000100138|ENST00000401959|SNU13	MULTI-MSMS	OvCa99_classI_Rep5	1	474.30120849609375	2	474.299853	946.585153	0.84208	0.0003994	1.3894	0.000659	2.2315	0.0010584	474.30036686293994	151.92	0.89656	151.92	151.55	152.45	0					47	18	4	0	0	0	0.057831	2	17798	17775;17798		156.93	36.871	1	698560			42973	2013	35522	35545	46437;46438	46438					0.10972422833663131
PLEKQALIQ	9	Unmodified	_PLEKQALIQ_					0	0	0			REV__ENSG00000111817|ENST00000644252|DSE	REV__ENSG00000111817|ENST00000644252|DSE	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.3011474609375	2	520.310949	1038.60735	-0.73011	-0.00037988	-2.4912	-0.0012962	-3.2214	-0.0016761	520.8127830445345	82.31	0.20152	80.014	79.887	80.089	-2.2963					5	3	2	0	0	0	0.027164	1	4626	4626		102.77	9.5779	1	8252.3	+		42974	18062	35523	35546	46439	46439					0.08958602511438585
PLELASVGID	10	Unmodified	_PLELASVGID_					0	0	0		ENST00000374232.7_1_9:115631560-115631692:+|nuORF	ENST00000374232.7_1_9:115631560-115631692:+|nuORF	ENST00000374232.7_1_9:115631560-115631692:+|nuORF	MSMS	OvCa9_classI_Rep3	3	507.2811279296875	2	507.279315	1012.54408	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.914	1	78.592	78.092	79.092	-2.3226								0	0	0	0.14342	1	4464	4464		51.335	5.3835	1				42975	11029	35524	35547	46440	46440					0.03830617003529824
PLELPQGVI	9	Unmodified	_PLELPQGVI_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.7662048339844	2	483.286943	964.559333	0.23115	0.00011171	-0.76504	-0.00036974	-0.53389	-0.00025802	483.2865142365806	57.69	0.75761	57.69	57.396	58.153	0					24	17	2	0	0	0	0.027462	1	4861	4861		37.159	14.117	1	148900	+		42976	28919	35525	35548	46441	46441					0.07563528591401791
PLELQFTTK	9	Unmodified	_PLELQFTTK_					0	0	0			REV__ENSG00000140678|ENST00000268296|ITGAX	REV__ENSG00000140678|ENST00000268296|ITGAX	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.8629760742188	2	538.802957	1075.59136	0.58174	0.00031344	-1.2294	-0.0006624	-0.64765	-0.00034896	538.8027425776701	133.16	0.68494	132.04	131.78	132.47	-1.1249					27	13	3	0	0	0	0.027462	1	10730	10730		55.504	11.387	1	19400	+		42977	19693	35526	35549	46442	46442					0.05658896274508152
PLEMEQLVN	9	Unmodified	_PLEMEQLVN_					0	0	0			REV__ENSG00000187950|ENST00000537054|OVCH1	REV__ENSG00000187950|ENST00000537054|OVCH1	MULTI-SECPEP	OvCa9_classI_Rep2	2	535.8217163085938	2	536.7708	1071.52705	-1.4767	-0.00079267	4.3836	0.002353	2.9068	0.0015603	536.7733203957401	57.28	1.0442	54.488	54.178	55.223	-2.792					28	20	2	0	0	0	0.02741	1	4151	4151		60.972	0	1	34800	+		42978	22676	35527	35550	46443	46443					-0.005856268739080406
PLEPESEFIIK	11	Unmodified	_PLEPESEFIIK_					0	0	0		ENSG00000145526|ENST00000382275|CDH18;nc|ENSG00000145526|Q13634-2|CDH18;ENSG00000154162|ENST00000382254|CDH12;nc|ENSG00000154162|P55289-2|CDH12	ENSG00000145526|ENST00000382275|CDH18;ENSG00000154162|ENST00000382254|CDH12	ENSG00000145526|ENST00000382275|CDH18	MULTI-SECPEP	OvCa99_classI_Rep5	1	435.24200439453125	3	434.571099	1300.69147	-0.12699	-5.5185E-05	3.6871	0.0016023	3.5601	0.0015471	434.57264903958276	25.901	0.44847	25.901	25.693	26.142	0					12	8	2	0	0	0	0.025911	1	613	613		19.263	0	1	102700			42979	5230;5716	35528	35551	46444	46444					0.05315088817656033
PLESVFRRPRG	11	Unmodified	_PLESVFRRPRG_					0	0	0		ENST00000439057.5_1_1:44172836-44172971:-|nuORF	ENST00000439057.5_1_1:44172836-44172971:-|nuORF	ENST00000439057.5_1_1:44172836-44172971:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	439.2483215332031	3	438.586077	1312.7364	-0.099394	-4.3593E-05	-0.51151	-0.00022434	-0.6109	-0.00026793	438.5858640701864	51.741	0.60635	48.568	48.372	48.978	-3.1734					20	11	2	0	0	0	0.026113	1	3058	3058		18.531	0	1	102960			42980	11906	35529	35552	46445	46445					0.09254377194224617
PLETIVIIN	9	Unmodified	_PLETIVIIN_					0	0	0		RNF145|p.H596Pfs*7|1|0.02|ENSG00000145860|chr5:159158875-159158876|-/TCAACAG|frameshift_variant;ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145	RNF145|p.H596Pfs*7|1|0.02|ENSG00000145860|chr5:159158875-159158876|-/TCAACAG|frameshift_variant	RNF145|p.H596Pfs*7|1|0.02|ENSG00000145860|chr5:159158875-159158876|-/TCAACAG|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	506.3099670410156	2	506.307875	1010.6012	1.7199	0.00087079	0.45196	0.00022883	2.1718	0.0010996	506.3080446562138	138.12	1.1926	138.12	137.54	138.74	0					41	25	2	0	0	0	0.35444	1	16109	16109		56.721	1.2168	1	244380			42981	5248	35530	35553	46446	46446					0.09632084279905939
PLEVSVQDHL	10	Unmodified	_PLEVSVQDHL_					0	0	0			REV__ENST00000555815.5_1_15:25924490-25961922:-|nuORF	REV__ENST00000555815.5_1_15:25924490-25961922:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	569.777099609375	2	568.800946	1135.58734	0.03807	2.1654E-05	1.3217	0.00075178	1.3598	0.00077344	568.8012548883338	94.231	1.4911	91.763	91.571	93.062	-2.4685					35	29	2	0	0	0	0.026849	1	8274	8274		40.778	5.1599	1	64761	+		42982	23236	35531	35554	46447	46447					0.024968067808231353
PLEWTVENTQ	10	Unmodified	_PLEWTVENTQ_					0	0	0			REV__FNBP4|p.E749Gfs*13|1|0.12|ENSG00000109920|chr11:47724541-47724541|T/-|frameshift_variant	REV__FNBP4|p.E749Gfs*13|1|0.12|ENSG00000109920|chr11:47724541-47724541|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	405.9124450683594	3	406.199666	1215.57717	0.66049	0.00026829	3.4672	0.0014084	4.1277	0.0016767	406.20078808071594	65.737	0.1468	62.252	62.179	62.325	-3.4854					4	2	2	0	0	0	0.027147	1	4737	4737		6.6596	0	1	9769.9	+		42983	17958	35532	35555	46448	46448					-0.02199800944413255
PLFEILIVK	9	Unmodified	_PLFEILIVK_					0	0	0			REV__nc|ENSG00000204116|Q5VXU3-2|CHIC1	REV__nc|ENSG00000204116|Q5VXU3-2|CHIC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3294067382812	2	536.344261	1070.67397	-0.92059	-0.00049375	1.8265	0.00097965	0.90595	0.0004859	536.3453452987513	34.281	0.14353	34.281	34.161	34.304	0					6	2	3	0	0	0	0.027392	1	1631	1631		73.975	10.668	1	45236	+		42984	29098	35533	35556	46449	46449					0.1414583807334111
PLFIHSIY	8	Unmodified	_PLFIHSIY_					0	0	0		nc|ENSG00000103534|Q6UXY8-4|TMC5;ENST00000567478.5_1_16:19467998-19503571:+|nuORF;nc|ENSG00000103534|Q6UXY8-3|TMC5;ENSG00000103534|ENST00000542583|TMC5	nc|ENSG00000103534|Q6UXY8-4|TMC5	nc|ENSG00000103534|Q6UXY8-4|TMC5	MULTI-SECPEP	OvCa9_classI_Rep3	3	495.7909851074219	2	495.276378	988.538203	-0.58396	-0.00028922	0.46292	0.00022927	-0.12104	-5.9947E-05	495.27639156962334	74.825	0.78204	72.415	71.944	72.726	-2.4106					22	15	2	0	0	0	0.028476	1	3771	3771		31.579	1.7373	1	24807			42985	2326	35534	35557	46450	46450					0.043475632825106914
PLFKRFTH	8	Unmodified	_PLFKRFTH_					0	0	0		chr14:103121499-103123437|388|11.02|0.0|20.07|+|ENST00000333007|TNFAIP2,TNFAIP2;ENSG00000185215|ENST00000560869|TNFAIP2	chr14:103121499-103123437|388|11.02|0.0|20.07|+|ENST00000333007|TNFAIP2,TNFAIP2	chr14:103121499-103123437|388|11.02|0.0|20.07|+|ENST00000333007|TNFAIP2,TNFAIP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.734130859375	2	523.300719	1044.58688	-1.2594	-0.00065903	-3.3943	-0.0017762	-4.6537	-0.0024353	523.298171285246	49.954	0.47766	49.954	49.723	50.201	0					14	10	2	0	0	0	0.028476	1	3749	3749		30.504	8.5438	1	763980			42986	339	35535	35558	46451	46451					0.06637476642254114
PLFLGIPLL	9	Unmodified	_PLFLGIPLL_					0	0	0			REV__ENST00000597476.5_1_19:41285769-41292865:+|nuORF	REV__ENST00000597476.5_1_19:41285769-41292865:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	491.7993469238281	2	491.820421	981.62629	0.53591	0.00026357	-4.1002	-0.0020166	-3.5643	-0.001753	491.81772650646457	106.44	1.5737	106.13	105.88	107.45	-0.30836					46	31	2	0	0	0	0.027412	1	9939	9939		72.62	0.74245	1	17563	+		42987	28000	35536	35559	46452	46452					0.13474183873154288
PLFLGIPLL	9	Unmodified	_PLFLGIPLL_					0	0	0			REV__ENST00000597476.5_1_19:41285769-41292865:+|nuORF	REV__ENST00000597476.5_1_19:41285769-41292865:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	491.80029296875	2	491.820421	981.62629	-0.090053	-4.429E-05	-4.0036	-0.0019691	-4.0937	-0.0020134	491.8179029262045	107.92	1.3449	106.72	105.97	107.32	-1.1978					30	25	2	0	0	0	0.027255	1	7624	7624		72.62	12.216	1	13585	+		42988	28000	35536	35559	46453	46453					0.13474183873154288
PLFLLLSRV	9	Unmodified	_PLFLLLSRV_					0	0	0		nc|ENSG00000148482|Q504Y0-2|SLC39A12;nc|ENSG00000148482|Q504Y0-3|SLC39A12;nc|ENSG00000148482|Q504Y0-4|SLC39A12;ENSG00000148482|ENST00000377369|SLC39A12	nc|ENSG00000148482|Q504Y0-2|SLC39A12	nc|ENSG00000148482|Q504Y0-2|SLC39A12	MULTI-MSMS	OvCa9_classI_Rep2	2	529.3416748046875	2	529.342052	1056.66955	-1.2903	-0.00068304	1.8378	0.0009728	0.54741	0.00028977	529.342852686274	137.98	1.4177	137.76	137.44	138.86	-0.22696					43	28	2	0	0	0	0.6959	1	13733	13733		19.36	1.995	1	35179			42989	5414	35537	35560	46454	46454					0.14348373650409485
PLFLPPGCW	9	Unmodified	_PLFLPPGCW_					0	0	0		nc|ENSG00000121210|A2VDJ0-3|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L;ENSG00000121210|ENST00000409959|TMEM131L;nc|ENSG00000121210|A2VDJ0-6|TMEM131L;nc|ENSG00000121210|A2VDJ0-2|TMEM131L	nc|ENSG00000121210|A2VDJ0-3|TMEM131L	nc|ENSG00000121210|A2VDJ0-3|TMEM131L	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.2827758789062	2	515.264956	1028.51536	0.94362	0.00048622	-1.6889	-0.00087025	-0.74532	-0.00038404	515.2638283510368	106.6	0.50926	105.33	105.11	105.62	-1.267					15	9	2	0	0	0	0.027462	1	7506	7506		39.021	5.5285	1	29134			42990	3473	35538	35561	46455	46455					0.002242208933694201
PLFNSHLEV	9	Unmodified	_PLFNSHLEV_					0	0	0		L1PA7_dup9238|chr10:48372221-48377370:+|1.4943041569802586|0.2795461482764699|2.42|429.0|207|2|anti-sense	L1PA7_dup9238|chr10:48372221-48377370:+|1.4943041569802586|0.2795461482764699|2.42|429.0|207|2|anti-sense	L1PA7_dup9238|chr10:48372221-48377370:+|1.4943041569802586|0.2795461482764699|2.42|429.0|207|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.2802124023438	2	528.279649	1054.54475	0.071185	3.7605E-05	2.8601	0.0015109	2.9313	0.0015485	528.2810213022229	110.49	1.6308	108.88	108.23	109.86	-1.6011					80	30	3	0	0	0	0.42676	1	10188	10188		49.442	5.3247	1	451410			42991	14764	35539	35562	46456	46456					0.0196545644323578
PLFNYFKQL	9	Unmodified	_PLFNYFKQL_					0	0	0		tr|A0A7D7A0Q9|A0A7D7A0Q9_9CLOTGlutamatesynthaselargesubunitOS=ClostridiumintestinaleOX=36845GN=gltBPE=3SV=1	tr|A0A7D7A0Q9|A0A7D7A0Q9_9CLOTGlutamatesynthaselargesubunitOS=ClostridiumintestinaleOX=36845GN=gltBPE=3SV=1	tr|A0A7D7A0Q9|A0A7D7A0Q9_9CLOTGlutamatesynthaselargesubunitOS=ClostridiumintestinaleOX=36845GN=gltBPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	585.3060302734375	2	585.321317	1168.62808	1.3911	0.00081426	-2.6514	-0.0015519	-1.2603	-0.00073767	585.3206512591612	106.97	0.59761	106.97	106.72	107.31	0					33	13	3	0	0	0	0.21395	1	12047	12047		73.975	6.4811	1	1010100			42992	36005	35540	35563	46457	46457					0.05051192891096434
PLFRGSSDVD	10	Unmodified	_PLFRGSSDVD_					0	0	0		ENSG00000105810|ENST00000424848|CDK6	ENSG00000105810|ENST00000424848|CDK6	ENSG00000105810|ENST00000424848|CDK6	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.8129272460938	2	546.769645	1091.52474	0.28211	0.00015425	0.068116	3.7244E-05	0.35023	0.00019149	546.7699534817368	72.202	1.8116	72.202	71.589	73.4	0					77	44	4	0	0	0	0.026752	1	7183	7183		35.618	0	1	1510300			42993	2503	35541	35564	46458	46458					-0.017363392873676275
PLFSLFVRRL	10	Unmodified	_PLFSLFVRRL_					0	0	0			REV__ENST00000509155.1_3_4:12642019-12642223:-|nuORF	REV__ENST00000509155.1_3_4:12642019-12642223:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	624.3756103515625	2	624.384783	1246.75501	-5.6311	-0.003516	0.40465	0.00025266	-5.2264	-0.0032633	624.3848091037548	161.93	0.45972	161.71	161.48	161.94	-0.22696					14	8	2	0	0	0	0.7759	1	16492	16492		21.96	8.5058	1	11440	+		42994	26923	35542	35565	46459	46459					0.14150538836088344
PLFTSTMSL	9	Unmodified	_PLFTSTMSL_					0	0	0		ENST00000525522.5_1_11:499827-504867:-|nuORF	ENST00000525522.5_1_11:499827-504867:-|nuORF	ENST00000525522.5_1_11:499827-504867:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.19464111328125	2	498.757161	995.499769	-0.45821	-0.00022854	3.8465	0.0019185	3.3883	0.0016899	498.759044992934	48.859	0.69856	48.859	48.332	49.031	0					26	15	2	0	0	0	0.027441	1	3634	3634		37.159	0	1	385010			42995	13195	35543	35566	46460	46460					0.0018388958568493763
PLFVDPSPI	9	Unmodified	_PLFVDPSPI_					0	0	0			REV__nc|ENSG00000058668|P23634-5|ATP2B4	REV__nc|ENSG00000058668|P23634-5|ATP2B4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.7962646484375	2	492.773668	983.532783	0.3567	0.00017577	3.8816	0.0019128	4.2383	0.0020885	492.77505634118666	75.831	0.34133	72.892	72.643	72.985	-2.9389					9	6	2	0	0	0	0.027433	1	5992	5992		51.335	0	1	39317	+		42996	16729	35544	35567	46461	46461					0.04035839700043198
PLFVVLKIP	9	Unmodified	_PLFVVLKIP_					0	0	0			REV__ENST00000437848.1_1_1:46116879-46117065:-|nuORF	REV__ENST00000437848.1_1_1:46116879-46117065:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.8168334960938	2	513.341521	1024.66849	-0.48584	-0.0002494	-3.7246	-0.001912	-4.2105	-0.0021614	513.3394515462927	76.669	0.90944	73.73	73.504	74.414	-2.9389					34	18	4	0	0	0	0.027462	1	6070	6070		20.482	0	1	166210	+		42997	25801	35545	35568	46462	46462					0.15714159281492357
PLGAGLHVLA	10	Unmodified	_PLGAGLHVLA_					0	0	0			REV__tr|A0A553SSV0|A0A553SSV0_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03775PE=3SV=1	REV__tr|A0A553SSV0|A0A553SSV0_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03775PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.2898254394531	2	474.287277	946.560001	2.9498	0.001399	4.2892	0.0020343	7.239	0.0034334	474.28922077273074	129.53	5.9099	128.07	125.62	131.53	-1.4565					195	118	2	0	0	0	0.73286	1	12547	12547		26.796	0	1	37993	+		42998	30883	35546	35569	46463	46463					0.08458368031097052
PLGDAARPSH	10	Unmodified	_PLGDAARPSH_					0	0	0		ENSG00000214827|ENST00000369476|MTCP1	ENSG00000214827|ENST00000369476|MTCP1	ENSG00000214827|ENST00000369476|MTCP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.76422119140625	2	510.764697	1019.51484	0.54586	0.0002788	-0.26361	-0.00013464	0.28224	0.00014416	510.7644267369593	33.184	0.69432	30.489	30.352	31.046	-2.6954					21	13	3	0	0	0	0.62299	1	869	869		39.253	5.7372	1	53662			42999	9184	35547	35570	46464	46464					0.0058651749790215035
PLGFHFTHS	9	Unmodified	_PLGFHFTHS_					0	0	0		FAT3|p.R2620Pfs*14|1|0.65|ENSG00000165323|chr11:92801322-92801322|G/-|frameshift_variant;FAT3|p.L1330Cfs*14|1|0.06|ENSG00000165323|chr11:92790044-92790044|C/-|frameshift_variant;FAT3|p.D1442Qfs*16|1|0.03|ENSG00000165323|chr11:92792928-92792929|-/CAAAT|frameshift_variant;FAT3|p.P2978Rfs*15|1|0.06|ENSG00000165323|chr11:92809977-92809978|-/GTTGCATCCTACAAGGAAGCACTGA|frameshift_variant;nc|ENSG00000165323|Q8TDW7-2|FAT3;FAT3|p.F3345Lfs*103|1|0.08|ENSG00000165323|chr11:92840677-92840678|-/AGTTGCCAGGATGTCCCCCCAAAAAA|frameshift_variant;FAT3|p.L3490Wfs*79|1|0.04|ENSG00000165323|chr11:92844285-92844285|T/-|frameshift_variant;FAT3|p.F3624Pfs*89|1|0.54|ENSG00000165323|chr11:92844685-92844686|-/CC|frameshift_variant;FAT3|p.V3625Sfs*97|1|0.52|ENSG00000165323|chr11:92844687-92844688|-/TCTCCATGAATTTTACATTCCAGCATCTC|frameshift_variant;nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3	FAT3|p.R2620Pfs*14|1|0.65|ENSG00000165323|chr11:92801322-92801322|G/-|frameshift_variant;FAT3|p.F3345Lfs*103|1|0.08|ENSG00000165323|chr11:92840677-92840678|-/AGTTGCCAGGATGTCCCCCCAAAAAA|frameshift_variant	FAT3|p.F3345Lfs*103|1|0.08|ENSG00000165323|chr11:92840677-92840678|-/AGTTGCCAGGATGTCCCCCCAAAAAA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.2802734375	2	521.758884	1041.50321	-0.2293	-0.00011964	3.3365	0.0017409	3.1072	0.0016212	522.2596426173614	98.387	0.9615	96.008	95.47	96.431	-2.3786					25	18	2	0	0	0	0.027456	1	8717	8717		47.916	7.1374	1	19644			43000	14324;6551	35548	35571	46465	46465					-0.015876795254371245
PLGIKVSFTP	10	Unmodified	_PLGIKVSFTP_					0	0	0		tr|A0A7D6ZV80|A0A7D6ZV80_9CLOTSulfatetransportsystempermeaseproteinCysTOS=ClostridiumintestinaleOX=36845GN=cysTPE=3SV=1	tr|A0A7D6ZV80|A0A7D6ZV80_9CLOTSulfatetransportsystempermeaseproteinCysTOS=ClostridiumintestinaleOX=36845GN=cysTPE=3SV=1	tr|A0A7D6ZV80|A0A7D6ZV80_9CLOTSulfatetransportsystempermeaseproteinCysTOS=ClostridiumintestinaleOX=36845GN=cysTPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.8311157226562	2	529.815867	1057.61718	-0.24901	-0.00013193	-3.9613	-0.0020988	-4.2104	-0.0022307	529.8137382225995	82.501	1.4795	80.902	80.54	82.02	-1.5989					57	29	3	0	0	0	0.026752	1	7055	7055		44.117	0	1	268800			43001	35795	35549	35572	46466	46466					0.09067790516814966
PLGKDLLF	8	Unmodified	_PLGKDLLF_					0	0	0			REV__ENST00000559603.1_1_17:78337492-78338684:+|nuORF	REV__ENST00000559603.1_1_17:78337492-78338684:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	452.7478942871094	2	451.770929	901.527304	-0.49339	-0.0002229	-3.349	-0.001513	-3.8423	-0.0017359	451.7693347918878	34.076	0.38372	34.076	33.921	34.304	0					12	7	2	0	0	0	0.028476	1	1600	1600		53.351	5.4358	1	43413	+		43002	27599	35550	35573	46467	46467					0.07260160908242597
PLGLLTLL	8	Unmodified	_PLGLLTLL_					0	0	0		ENSG00000260456|ENST00000567970|C16orf95	ENSG00000260456|ENST00000567970|C16orf95	ENSG00000260456|ENST00000567970|C16orf95	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.54962158203125	2	420.283672	838.552791	0.22318	9.3801E-05	-3.3143	-0.0013929	-3.0911	-0.0012991	420.2822274132199	56.682	0.36634	56.682	56.422	56.788	0					11	8	2	0	0	0	0.028476	1	4705	4705		8.8223	0	1	84638			43003	9493	35551	35574	46468	46468					0.12705635430654638
PLGLQASPPPL	11	Unmodified	_PLGLQASPPPL_					0	0	0			REV__ENST00000355999.4_1_2:169104088-169104139:-|nuORF	REV__ENST00000355999.4_1_2:169104088-169104139:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	545.31640625	2	545.318774	1088.623	-6.9928	-0.0038133	2.7185	0.0014824	-4.2743	-0.0023309	545.3200392463325	162.37	0.78299	161	160.77	161.55	-1.3692					24	16	2	0	0	0	0.67814	1	14138	14138		37.159	11.585	1	36327	+		43004	24758	35552	35575	46469	46469					0.08222889028479585
PLGLQASPPPL	11	Unmodified	_PLGLQASPPPL_					0	0	0			REV__ENST00000355999.4_1_2:169104088-169104139:-|nuORF	REV__ENST00000355999.4_1_2:169104088-169104139:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	545.318774	1088.623	-5.1556	-0.0028114	1.0541	0.00057481	-4.1015	-0.0022366	545.3190602416025	161.59	0.47919	161.37	161.14	161.62	-0.22696	0.15574	-0.0016431	NaN	37.159	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15739	+		43005	24758	35552	35575							0.08222889028479585
PLGLQASPPPL	11	Unmodified	_PLGLQASPPPL_					0	0	0			REV__ENST00000355999.4_1_2:169104088-169104139:-|nuORF	REV__ENST00000355999.4_1_2:169104088-169104139:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	545.318774	1088.623	-6.9928	-0.0038133	2.7185	0.0014824	-4.2743	-0.0023309	545.3200392463325	162.37	0.78299	161	160.77	161.55	-1.3692	-0.2077	0.00017214	NaN	37.159	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36327	+		43006	24758	35552	35575							0.08222889028479585
PLGLQASPPPL	11	Unmodified	_PLGLQASPPPL_					0	0	0			REV__ENST00000355999.4_1_2:169104088-169104139:-|nuORF	REV__ENST00000355999.4_1_2:169104088-169104139:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	545.318774	1088.623	-6.9152	-0.003771	2.8356	0.0015463	-4.0796	-0.0022247	545.3200915772305	162.9	0.83978	161.26	160.98	161.82	-1.6336	0.051951	0.0002999	NaN	37.159	34	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25433	+		43007	24758	35552	35575							0.08222889028479585
PLGLRKAHS	9	Unmodified	_PLGLRKAHS_					0	0	0		ENSG00000139131|ENST00000324868|YARS2	ENSG00000139131|ENST00000324868|YARS2	ENSG00000139131|ENST00000324868|YARS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.7957458496094	2	489.795801	977.577048	0.017229	8.4388E-06	-0.47975	-0.00023498	-0.46252	-0.00022654	489.7954117038854	39.414	1.097	36.487	36.246	37.343	-2.9264					61	21	4	0	0	0	0.53957	1	1612	1612		38.806	3.6054	1	390760			43008	4742	35553	35576	46470	46470					0.08736288636896461
PLGLYPAPPQP	11	Unmodified	_PLGLYPAPPQP_					0	0	0			REV__nc|ENSG00000089847|Q8TF21-2|ANKRD24	REV__nc|ENSG00000089847|Q8TF21-2|ANKRD24	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.2952880859375	2	575.318774	1148.623	-0.70129	-0.00040347	-1.097	-0.00063111	-1.7983	-0.0010346	575.3180410481126	103.51	1.2602	103.51	102.98	104.24	0					61	29	4	0	0	0	0.025496	1	11605	11605		32.812	12.816	1	2140000	+		43009	28753	35554	35577	46471	46471					0.05462889028444806
PLGPIIRLPL	10	Unmodified	_PLGPIIRLPL_					0	0	0			REV__ENST00000368653.7_1_10:129923864-129924401:-|nuORF	REV__ENST00000368653.7_1_10:129923864-129924401:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.864501953125	2	544.863152	1087.71175	0.15544	8.4692E-05	-0.26193	-0.00014271	-0.10649	-5.8022E-05	544.8628457057445	141.22	1.1476	139.75	139.4	140.55	-1.4627					47	21	3	0	0	0	0.71192	1	13788	13788		29.15	0	1	95949	+		43010	24922	35555	35578	46472	46472					0.17140349058786342
PLGPPPGPPPP	11	Unmodified	_PLGPPPGPPPP_					0	0	0		ENST00000567636.1_1_18:30092208-30092496:+|nuORF	ENST00000567636.1_1_18:30092208-30092496:+|nuORF	ENST00000567636.1_1_18:30092208-30092496:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	512.2588500976562	2	511.78711	1021.55967	-0.8447	-0.00043231	-2.9109	-0.0014898	-3.7556	-0.0019221	511.78546185332027	56.314	1.0405	53.51	53.027	54.068	-2.804					23	20	2	0	0	0	0.025357	1	3946	3946		31.955	8.9124	1	19295			43011	13863	35556	35579	46473	46473					0.04974948311235039
PLGQGLRLL	9	Unmodified	_PLGQGLRLL_					0	0	0		ENST00000469937.2_1_7:46732538-46799433:-|nuORF;ENST00000487094.1_1_7:46718338-46799433:-|nuORF	ENST00000469937.2_1_7:46732538-46799433:-|nuORF	ENST00000469937.2_1_7:46732538-46799433:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.2930908203125	2	483.808377	965.6022	-1.0238	-0.00049533	0.22786	0.00011024	-0.79595	-0.00038509	483.80841322228935	95.175	0.85202	92.707	92.46	93.312	-2.4685					31	16	3	0	0	0	0.027462	1	8384	8384		40.573	12.69	1	59552			43012	12354	35557	35580	46474	46474					0.11802343439467222
PLGRLRRF	8	Unmodified	_PLGRLRRF_					0	0	0			REV__ENST00000561765.1_1_16:1795016-1797040:+|nuORF	REV__ENST00000561765.1_1_16:1795016-1797040:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.8157958984375	2	507.81961	1013.62467	-0.80317	-0.00040787	-0.38455	-0.00019528	-1.1877	-0.00060315	507.8192861883332	75.167	0.46819	73.196	72.948	73.417	-1.9711					14	8	2	0	0	0	0.028476	1	6177	6177		20.482	1.1219	1	29671	+		43013	27640	35558	35581	46475	46475					0.1183998762775218
PLGSPSPRPRR	11	Unmodified	_PLGSPSPRPRR_					0	0	0		ENSG00000158859|ENST00000367996|ADAMTS4;nc|ENSG00000158859|O75173-2|ADAMTS4	ENSG00000158859|ENST00000367996|ADAMTS4	ENSG00000158859|ENST00000367996|ADAMTS4	MULTI-MSMS	OvCa9_classI_Rep4_	4	610.3543090820312	2	610.354545	1218.69454	1.2423	0.00075824	-1.1202	-0.00068371	0.1221	7.4524E-05	610.3536703395838	34.948	0.95424	32.117	31.853	32.808	-2.831					49	18	4	0	0	0	0.71098	1	1072	1072		29.17	9.1733	1	158240			43014	5976	35559	35582	46476	46476					0.09393821505682354
PLGVPVLPVE	10	Unmodified	_PLGVPVLPVE_					0	0	0			REV__ENST00000464740.1_1_22:51216264-51220722:-|nuORF	REV__ENST00000464740.1_1_22:51216264-51220722:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.31475830078125	2	510.310418	1018.60628	-0.27655	-0.00014112	0.74843	0.00038193	0.47189	0.00024081	510.31039321707414	40.689	0.22233	40.689	40.573	40.795	0					5	4	2	0	0	0	0.026982	1	2490	2490		38.806	22.333	1	38909	+		43015	26156	35560	35583	46477	46477					0.09772388142516775
PLGVREPL	8	Unmodified	_PLGVREPL_					0	0	0			REV__ENST00000586299.1_1_17:76673268-76673652:-|nuORF	REV__ENST00000586299.1_1_17:76673268-76673652:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	440.7676696777344	2	440.766178	879.517802	3.0752	0.0013554	-0.42642	-0.00018795	2.6488	0.0011675	440.76579968786945	79.499	1.7915	79.499	79.202	80.993	0					85	43	3	0	0	0	0.72134	1	8090	8090		39.021	1.8624	1	2142300	+		43016	27861	35561	35584	46478	46478					0.07322392622711504
PLHDEKVLS	9	Unmodified	_PLHDEKVLS_					0	0	0		tr|A0A7D7A0N4|A0A7D7A0N4_9CLOTDNApolymeraseIIIPolC-typeOS=ClostridiumintestinaleOX=36845GN=polCPE=3SV=1	tr|A0A7D7A0N4|A0A7D7A0N4_9CLOTDNApolymeraseIIIPolC-typeOS=ClostridiumintestinaleOX=36845GN=polCPE=3SV=1	tr|A0A7D7A0N4|A0A7D7A0N4_9CLOTDNApolymeraseIIIPolC-typeOS=ClostridiumintestinaleOX=36845GN=polCPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.3333129882812	2	519.284931	1036.55531	-0.23067	-0.00011978	-0.15819	-8.2146E-05	-0.38886	-0.00020193	519.2849095106153	77.274	1.5109	75.485	74.688	76.199	-1.7894					61	28	4	0	0	0	0.027462	1	6358	6358		37.159	8.0096	1	188340			43017	36001	35562	35585	46479	46479					0.03849439097666618
PLHDLLSFT	9	Unmodified	_PLHDLLSFT_					0	0	0			REV__ENSG00000165996|ENST00000361271|HACD1	REV__ENSG00000165996|ENST00000361271|HACD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.8145141601562	2	521.782025	1041.5495	-0.69134	-0.00036073	-0.73512	-0.00038357	-1.4265	-0.0007443	521.7816704391664	79.389	0.81079	76.638	76.466	77.277	-2.7514					44	16	4	0	0	0	0.027462	1	6515	6515		35.201	4.6971	1	354490	+		43018	21146	35563	35586	46480	46480					0.030383405859993218
PLHGGFMPIL	10	Unmodified	_PLHGGFMPIL_					0	0	0		tr|A0A7D7A5V4|A0A7D7A5V4_9CLOTEndosporegerminationpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07610PE=3SV=1	tr|A0A7D7A5V4|A0A7D7A5V4_9CLOTEndosporegerminationpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07610PE=3SV=1	tr|A0A7D7A5V4|A0A7D7A5V4_9CLOTEndosporegerminationpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07610PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	541.2965087890625	2	541.296788	1080.57902	-1.409	-0.00076271	0.76993	0.00041676	-0.63911	-0.00034595	541.297081614145	33.056	0.94622	30.346	30.025	30.972	-2.7097					31	18	2	0	0	0	0.49566	1	1144	1144		54.765	17.606	1	133490			43019	36178	35564	35587	46481	46481					0.041955813305094125
PLHIPAVL	8	Unmodified	_PLHIPAVL_					0	0	0		ENST00000231061.8_1_5:151066426-151066531:-|nuORF	ENST00000231061.8_1_5:151066426-151066531:-|nuORF	ENST00000231061.8_1_5:151066426-151066531:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	430.2741394042969	2	430.273638	858.532724	0.52903	0.00022763	-0.44668	-0.0001922	0.08235	3.5433E-05	430.27333471569034	108.54	1.6558	107.34	106.9	108.56	-1.1978					82	31	3	0	0	0	0.69862	1	7758	7758		43.626	0	1	490810			43020	9722	35565	35588	46482	46482					0.09779884490706081
PLHKGKKAV	9	Unmodified	_PLHKGKKAV_					0	0	0		ENSG00000092067|ENST00000206513|CEBPE	ENSG00000092067|ENST00000206513|CEBPE	ENSG00000092067|ENST00000206513|CEBPE	MULTI-MSMS	OvCa9_classI_Rep2	2	489.31365966796875	2	489.316369	976.618185	-2.9034	-0.0014207	-1.3918	-0.00068104	-4.2952	-0.0021017	489.3155696010777	150.8	1.5265	150.57	150.17	151.7	-0.22696					77	30	4	0	0	0	0.70177	1	15317	15317		17.365	0	1	380370			43021	1883	35566	35589	46483	46483					0.12894049676378927
PLHLTLPQALP	11	Unmodified	_PLHLTLPQALP_					0	0	0		ENST00000437800.6_1_12:6925109-6928492:+|nuORF;ENSG00000010610|ENST00000011653|CD4	ENST00000437800.6_1_12:6925109-6928492:+|nuORF	ENST00000437800.6_1_12:6925109-6928492:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	400.5763854980469	3	400.576408	1198.70739	1.3196	0.00052861	-1.2069	-0.00048346	0.11273	4.5157E-05	400.57584360186854	59.158	1.6195	56.378	56.137	57.756	-2.7801					103	30	5	0	0	0	0.55686	1	4308	4308		48.602	5.7373	1	716960			43022	947	35567	35590	46484	46484					0.1159883984521457
PLHNQKRSKP	10	Unmodified	_PLHNQKRSKP_					0	0	0			REV__ENST00000586730.1_1_19:10202612-10202975:+|nuORF	REV__ENST00000586730.1_1_19:10202612-10202975:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	402.5868225097656	3	402.235156	1203.68364	1.8035	0.00072541	1.8452	0.0007422	3.6486	0.0014676	402.2357111910287	66.762	0.79475	64.067	63.617	64.411	-2.6958					26	15	2	0	0	0	0.02706	1	5190	5190		23.523	3.5259	1	15431	+		43023	18973	35568	35591	46485	46485					0.08994419131408904
PLHPPLPSL	9	Unmodified	_PLHPPLPSL_					0	0	0		ENSG00000125900|ENST00000381623|SIRPD	ENSG00000125900|ENST00000381623|SIRPD	ENSG00000125900|ENST00000381623|SIRPD	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.29217529296875	2	485.789653	969.564752	-0.74906	-0.00036389	-3.5846	-0.0017413	-4.3336	-0.0021052	485.7878313517453	81.171	1.9934	78.46	77.566	79.559	-2.7106					63	40	3	0	0	0	0.027462	1	6771	6771		40.573	8.6178	1	158430			43024	3752	35569	35592	46486	46486					0.07875252173846548
PLHPPLPSL	9	Unmodified	_PLHPPLPSL_					0	0	0		ENSG00000125900|ENST00000381623|SIRPD	ENSG00000125900|ENST00000381623|SIRPD	ENSG00000125900|ENST00000381623|SIRPD	MULTI-MATCH	OvCa9_classI_Rep2	2		2	485.789653	969.564752	0.40636	0.00019741	-4.7425	-0.0023039	-4.3361	-0.0021065	485.787235027498	80.383	1.8981	78.688	77.975	79.873	-1.6951	0.16561	-0.00077677	NaN	60.294	52	37	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70739			43025	3752	35569	35592							0.07875252173846548
PLHPPLPSL	9	Unmodified	_PLHPPLPSL_					0	0	0		ENSG00000125900|ENST00000381623|SIRPD	ENSG00000125900|ENST00000381623|SIRPD	ENSG00000125900|ENST00000381623|SIRPD	MULTI-MATCH	OvCa9_classI_Rep3	3		2	485.789653	969.564752	-0.62809	-0.00030512	-3.3689	-0.0016366	-3.997	-0.0019417	485.7879127611293	80.741	1.7299	78.419	77.878	79.608	-2.3226	-0.10347	0.00055776	NaN	60.294	60	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178950			43026	3752	35569	35592							0.07875252173846548
PLHQQQPCL	9	Unmodified	_PLHQQQPCL_					0	0	0			REV__nc|ENSG00000152601|Q9NR56-7|MBNL1	REV__nc|ENSG00000152601|Q9NR56-7|MBNL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.3487548828125	2	532.271301	1062.52805	1.5008	0.00079884	2.9819	0.0015872	4.4827	0.002386	532.2770743429493	138.32	1.106	138.32	137.97	139.07	0					34	22	3	0	0	0	0.027462	1	16125	16125		33.516	0	1	60110	+		43027	28933	35570	35593	46487	46487					-0.0007136771434943512
PLHRKGTAAR	10	Unmodified	_PLHRKGTAAR_					0	0	0			REV__ENST00000455858.2_2_12:117467953-117468139:+|nuORF	REV__ENST00000455858.2_2_12:117467953-117468139:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8311767578125	2	553.830706	1105.64686	2.0639	0.0011431	-2.9809	-0.0016509	-0.91697	-0.00050785	553.8288797091304	138.06	1.0604	136.53	135.73	136.79	-1.5284					43	23	2	0	0	0	0.73378	1	13452	13452		26.693	1.1189	1	28092	+		43028	26022	35571	35594	46488	46488					0.09826167305504896
PLHSLPAFTF	10	Unmodified	_PLHSLPAFTF_					0	0	0			REV__ENST00000486986.6_1_1:151752280-151755498:-|nuORF	REV__ENST00000486986.6_1_1:151752280-151755498:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.3309936523438	2	565.305667	1128.59678	2.8661	0.0016202	4.1036	0.0023198	6.9697	0.00394	565.3081000289877	96.071	0.42703	96.071	95.826	96.253	0					17	9	2	0	0	0	0.026752	1	10513	10513		35.618	10.044	1	298330	+		43029	26594	35572	35595	46489	46489					0.03762619856979654
PLHVHTQDL	9	Unmodified	_PLHVHTQDL_					0	0	0			REV__chr10:133345797-133355738|226|11.91|0.45|4.74|-|0|TE_info:MER4B,MER4B_dup1148,ERV1,LTR,acceptor,-,133345508,133345797|None,FUOM|4	REV__chr10:133345797-133355738|226|11.91|0.45|4.74|-|0|TE_info:MER4B,MER4B_dup1148,ERV1,LTR,acceptor,-,133345508,133345797|None,FUOM|4	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.3052978515625	2	530.282723	1058.55089	0.24176	0.0001282	3.3397	0.001771	3.5814	0.0018992	530.2844715989185	45.252	0.42788	45.252	45.068	45.496	0					19	9	3	0	0	0	0.027462	1	3132	3132		30.504	9.5567	1	536570	+		43030	15846	35573	35596	46490	46490					0.023959746747550525
PLIDLIENI	9	Unmodified	_PLIDLIENI_					0	0	0			REV__tr|A0A553SJE9|A0A553SJE9_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16580PE=4SV=1	REV__tr|A0A553SJE9|A0A553SJE9_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16580PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	520.3057861328125	2	520.305332	1038.59611	0.63202	0.00032884	0.86158	0.00044829	1.4936	0.00077713	520.3057007501754	155.35	1.6213	155.35	154.42	156.04	0					87	31	4	0	0	0	0.10502	2	18205	18182;18205		95.815	23.938	1	1730900	+		43031	30003	35574	35597	46491;46492	46492					0.07835780417281057
PLIDLIENI	9	Unmodified	_PLIDLIENI_					0	0	0			REV__tr|A0A553SJE9|A0A553SJE9_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16580PE=4SV=1	REV__tr|A0A553SJE9|A0A553SJE9_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16580PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	520.304931640625	2	520.305332	1038.59611	-3.2661	-0.0016994	3.083	0.0016041	-0.18311	-9.5276E-05	520.3067684329717	152.16	1.3327	151.93	151.5	152.83	-0.22696					65	26	4	0	0	0	0.34132	3	15457	15451;15457;15462		58.23	5.2932	1	198050	+		43032	30003	35574	35597	46493;46494;46495	46494					0.07835780417281057
PLIDLIENI	9	Unmodified	_PLIDLIENI_					0	0	0			REV__tr|A0A553SJE9|A0A553SJE9_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16580PE=4SV=1	REV__tr|A0A553SJE9|A0A553SJE9_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16580PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.3050537109375	2	520.305332	1038.59611	-4.1402	-0.0021542	3.9689	0.0020651	-0.17131	-8.9133E-05	520.3072815468703	153.07	1.2181	151.63	151.24	152.46	-1.4351					76	30	4	0	0	0	0.1804	2	15167	15154;15167		79.713	13.283	1	318110	+		43033	30003	35574	35597	46496;46497	46497					0.07835780417281057
PLIDLIENI	9	Unmodified	_PLIDLIENI_					0	0	0			REV__tr|A0A553SJE9|A0A553SJE9_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16580PE=4SV=1	REV__tr|A0A553SJE9|A0A553SJE9_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16580PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	520.305332	1038.59611	-4.1402	-0.0021542	3.9689	0.0020651	-0.17131	-8.9133E-05	520.3072815468703	153.07	1.2181	151.63	151.24	152.46	-1.4351	-0.097794	7.8204E-05	NaN	79.713	76	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	318110	+		43034	30003	35574	35597							0.07835780417281057
PLIINRSVK	9	Unmodified	_PLIINRSVK_					0	0	0		tr|A0A7D6ZF25|A0A7D6ZF25_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16125PE=4SV=1	tr|A0A7D6ZF25|A0A7D6ZF25_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16125PE=4SV=1	tr|A0A7D6ZF25|A0A7D6ZF25_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16125PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.2748413085938	2	520.334759	1038.65496	-1.4482	-0.00075354	0.054223	2.8214E-05	-1.394	-0.00072533	520.3343273425356	73.168	0.43608	69.771	69.64	70.076	-3.3961					15	8	2	0	0	0	0.027462	1	5693	5693		9.7057	0	1	56096			43035	35498	35575	35598	46498	46498					0.13718301502285613
PLIKSQLNK	9	Unmodified	_PLIKSQLNK_					0	0	0		ENSG00000197410|ENST00000357232|DCHS2	ENSG00000197410|ENST00000357232|DCHS2	ENSG00000197410|ENST00000357232|DCHS2	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.3011474609375	2	520.826766	1039.63898	-0.61928	-0.00032254	-0.21505	-0.000112	-0.83433	-0.00043454	520.8266962616866	81.892	1.0047	79.595	79.182	80.187	-2.2963					47	19	3	0	0	0	0.027279	1	4626	4626		82.305	18.999	1	90801			43036	8709	35576	35599	46499	46499					0.12074595265357857
PLIKSQLNK	9	Unmodified	_PLIKSQLNK_					0	0	0		ENSG00000197410|ENST00000357232|DCHS2	ENSG00000197410|ENST00000357232|DCHS2	ENSG00000197410|ENST00000357232|DCHS2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	520.826766	1039.63898	0.67856	0.00035341	-1.6745	-0.00087211	-0.99591	-0.0005187	520.8257793715302	81.044	0.70407	79.395	79.114	79.818	-1.6485	-0.1034	-0.00090799	NaN	82.305	31	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60334			43037	8709	35576	35599							0.12074595265357857
PLILIDGPVL	10	Unmodified	_PLILIDGPVL_					0	0	0			REV__ENSG00000187527|ENST00000342358|ATP13A5	REV__ENSG00000187527|ENST00000342358|ATP13A5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.7648315429688	2	525.333893	1048.65323	-0.573	-0.00030102	-2.1345	-0.0011213	-2.7075	-0.0014224	525.3326581376734	65.076	0.7724	61.591	61.358	62.13	-3.4854					19	15	2	0	0	0	0.027056	1	4661	4661		27.882	0	1	94500	+		43038	22644	35577	35600	46500	46500					0.1308524769365249
PLILVLLPVAS	11	Unmodified	_PLILVLLPVAS_					0	0	0		ENST00000521323.1_1_8:79710258-79717217:-|nuORF;nc|ENSG00000104432|P13232-2|IL7;ENSG00000104432|ENST00000263851|IL7	ENST00000521323.1_1_8:79710258-79717217:-|nuORF	ENST00000521323.1_1_8:79710258-79717217:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	567.806396484375	2	567.878468	1133.74238	-1.0034	-0.00056981	-2.6719	-0.0015173	-3.6753	-0.0020871	567.8770976223251	69.011	0.19904	66.391	66.316	66.515	-2.6203					5	3	2	0	0	0	0.02601	1	5463	5463		15.642	5.3766	1	7021.3			43039	2376	35578	35601	46501	46501					0.18086082653189806
PLISNIPNI	9	Unmodified	_PLISNIPNI_					0	0	0		tr|A0A7D6VNG0|A0A7D6VNG0_9CLOT1-deoxy-D-xylulose-5-phosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12740PE=3SV=1	tr|A0A7D6VNG0|A0A7D6VNG0_9CLOT1-deoxy-D-xylulose-5-phosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12740PE=3SV=1	tr|A0A7D6VNG0|A0A7D6VNG0_9CLOT1-deoxy-D-xylulose-5-phosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12740PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.7921447753906	2	490.792392	979.570232	-0.78489	-0.00038522	0.56555	0.00027757	-0.21933	-0.00010765	490.79245147722105	100.69	1.63	98.42	97.825	99.455	-2.2665					59	32	3	0	0	0	0.074342	1	9011	9011		104.75	1.9732	1	315150			43040	34702	35579	35602	46502	46502					0.07962930965641135
PLISYGGT	8	Unmodified	_PLISYGGT_					0	0	0		tr|A0A7D6W168|A0A7D6W168_9CLOTFtsW/RodA/SpoVEfamilycellcycleproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02600PE=4SV=1	tr|A0A7D6W168|A0A7D6W168_9CLOTFtsW/RodA/SpoVEfamilycellcycleproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02600PE=4SV=1	tr|A0A7D6W168|A0A7D6W168_9CLOTFtsW/RodA/SpoVEfamilycellcycleproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02600PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.186767578125	2	404.215986	806.417419	1.0371	0.00041921	-0.54911	-0.00022196	0.48798	0.00019725	404.215548594608	41.172	0.31551	41.172	40.969	41.285	0					11	6	2	0	0	0	0.028476	1	2537	2537		38.806	12.01	1	34081			43041	35401	35580	35603	46503	46503					0.00646735569057455
PLITLQHSAN	10	Unmodified	_PLITLQHSAN_					0	0	0			REV__MFSD6|p.V594Sfs*35|1|0.11|ENSG00000151690|chr2:190488804-190488805|-/A|frameshift_variant	REV__MFSD6|p.V594Sfs*35|1|0.11|ENSG00000151690|chr2:190488804-190488805|-/A|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.3231811523438	2	547.303655	1092.59276	-1.2947	-0.00070859	-2.2705	-0.0012426	-3.5651	-0.0019512	547.8015408924717	55.328	0.71318	52.034	51.648	52.361	-3.2944					21	13	3	0	0	0	0.027145	1	3466	3466		12.812	0	1	30649	+		43042	20248	35581	35604	46504	46504					0.050165303632638825
PLIVIQLSQSL	11	Unmodified	_PLIVIQLSQSL_					0	0	0			REV__ENST00000378565.9_1_13:48830463-48832280:+|nuORF	REV__ENST00000378565.9_1_13:48830463-48832280:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	605.8718872070312	2	605.873914	1209.73327	-4.8731	-0.0029525	1.7175	0.0010406	-3.1556	-0.0019119	605.8747875580638	157.58	1.169	156.04	155.73	156.9	-1.545					92	31	4	0	0	0	0.72064	1	15563	15563		22.58	5.1116	1	205220	+		43043	25144	35582	35605	46505	46505					0.13679689296850484
PLIWSEKKHK	10	Unmodified	_PLIWSEKKHK_					0	0	0			REV__ENST00000261254.7_1_12:4412413-4412500:+|nuORF	REV__ENST00000261254.7_1_12:4412413-4412500:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3670654296875	2	633.371872	1264.72919	-4.1446	-0.0026251	-0.18183	-0.00011517	-4.3265	-0.0027403	633.3716506579397	149.94	3.0119	148.99	147.85	150.86	-0.9512					218	59	5	0	0	0	0.82648	1	12903	12903		15.642	1.5047	1	281260	+		43044	23943	35583	35606	46506	46506					0.10741644593804267
PLKDALEYVI	10	Unmodified	_PLKDALEYVI_					0	0	0		ENSG00000105738|ENST00000222345|SIPA1L3	ENSG00000105738|ENST00000222345|SIPA1L3	ENSG00000105738|ENST00000222345|SIPA1L3	MULTI-SECPEP	OvCa9_classI_Rep2	2	579.8364868164062	2	580.831714	1159.64888	-0.044749	-2.5992E-05	0.83415	0.0004845	0.7894	0.00045851	580.832086801802	64.9	0.26315	62.175	61.97	62.233	-2.7245					5	4	2	0	0	0	0.027056	1	4944	4944		27.882	8.5223	1	4337.4			43045	2494	35584	35607	46507	46507					0.0754373848008072
PLKEKGTRD	9	Unmodified	_PLKEKGTRD_					0	0	0			REV__ENST00000480134.5_2_1:33478679-33478739:-|nuORF	REV__ENST00000480134.5_2_1:33478679-33478739:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	522.7921142578125	2	522.29583	1042.57711	-0.68758	-0.00035912	-4.1674	-0.0021766	-4.855	-0.0025357	522.7933824998161	40.844	0.61926	40.844	40.666	41.285	0					31	13	4	0	0	0	0.61208	1	2507	2507		30.504	2.2494	1	614810	+		43046	26452	35585	35608	46508	46508					0.057522438462456194
PLKEKGTRD	9	Unmodified	_PLKEKGTRD_					0	0	0			REV__ENST00000480134.5_2_1:33478679-33478739:-|nuORF	REV__ENST00000480134.5_2_1:33478679-33478739:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	522.29583	1042.57711	-0.68758	-0.00035912	-4.1674	-0.0021766	-4.855	-0.0025357	522.7933824998161	40.844	0.61926	40.844	40.666	41.285	0	0	0	NaN	30.504	31	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	614810	+		43047	26452	35585	35608							0.057522438462456194
PLKGLSNSL	9	Unmodified	_PLKGLSNSL_					0	0	0			REV__ENSG00000134897|ENST00000257336|BIVM	REV__ENSG00000134897|ENST00000257336|BIVM	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.2815856933594	2	464.776742	927.538931	2.1342	0.00099192	-2.1742	-0.0010105	-0.039979	-1.8581E-05	464.7749066032628	77.403	0.2084	77.403	77.293	77.501	0					7	4	2	0	0	0	0.027462	1	7814	7814		19.997	13.684	1	402960	+		43048	19240	35586	35609	46509	46509					0.07226357931563143
PLKGPQYLN	9	Unmodified	_PLKGPQYLN_					0	0	0			REV__nc|ENSG00000152910|Q9C0A0-2|CNTNAP4	REV__nc|ENSG00000152910|Q9C0A0-2|CNTNAP4	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.3355102539062	2	515.290017	1028.56548	1.2904	0.00066494	0.04218	2.1735E-05	1.3326	0.00068667	515.2898606352683	79.015	0.49672	79.015	78.54	79.037	0					16	11	2	0	0	0	0.027462	1	8016	8016		31.955	0	1	1167100	+		43049	20310	35587	35610	46510	46510					0.05234046822897653
PLKGSPVHLE	10	Unmodified	_PLKGSPVHLE_					0	0	0			REV__nc|ENSG00000169946|Q8WW38-2|ZFPM2	REV__nc|ENSG00000169946|Q8WW38-2|ZFPM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.3070068359375	2	538.808574	1075.60259	0.79813	0.00043004	0.66337	0.00035743	1.4615	0.00078747	538.808726318894	66.883	0.51248	66.883	66.7	67.212	0					23	12	3	0	0	0	0.026891	1	6264	6264		31.53	4.8369	1	1082100	+		43050	28998	35588	35611	46511	46511					0.06781718368665679
PLKHQKLG	8	Unmodified	_PLKHQKLG_					0	0	0		tr|A0A553SMN1|A0A553SMN1_NIACID-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidaseOS=NialliacirculansOX=1397GN=dacBPE=3SV=1	tr|A0A553SMN1|A0A553SMN1_NIACID-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidaseOS=NialliacirculansOX=1397GN=dacBPE=3SV=1	tr|A0A553SMN1|A0A553SMN1_NIACID-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-alanine-endopeptidaseOS=NialliacirculansOX=1397GN=dacBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	460.7890319824219	2	460.787444	919.560336	-0.83883	-0.00038652	0.70542	0.00032505	-0.13342	-6.1477E-05	460.7876066741089	52.432	2.375	49.224	48.387	50.762	-3.208					112	46	4	0	0	0	0.73288	1	3166	3166		35.201	3.2459	1	572840			43051	33853	35589	35612	46512	46512					0.09733787750940337
PLKHSTPE	8	Unmodified	_PLKHSTPE_					0	0	0		ENSG00000283247|ENST00000636578|CCDC201	ENSG00000283247|ENST00000636578|CCDC201	ENSG00000283247|ENST00000636578|CCDC201	MULTI-SECPEP	OvCa99_classI_Rep5	1	455.2629699707031	2	454.745442	907.476331	0.65506	0.00029789	-1.3269	-0.00060342	-0.67188	-0.00030554	454.7446224905742	161.76	1.1157	161.76	161.31	162.43	0					24	21	2	0	0	0	0.028476	1	18921	18921		37.159	0	1	25567			43052	9611	35590	35613	46513	46513					0.01889211863374385
PLKKISRNYF	10	Unmodified	_PLKKISRNYF_					0	0	0		ENST00000394767.2_1_4:105393230-105393449:-|nuORF	ENST00000394767.2_1_4:105393230-105393449:-|nuORF	ENST00000394767.2_1_4:105393230-105393449:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3682250976562	2	633.371872	1264.72919	-4.1446	-0.0026251	-0.18183	-0.00011517	-4.3265	-0.0027403	633.3716506579397	149.94	3.0119	148.99	147.85	150.86	-0.9512					218	59	5	0	0	0	0.78463	1	12794	12794		20.947	0	1	281260			43053	11276	35591	35614	46514	46514					0.10741644593804267
PLKKLVEKE	9	Unmodified	_PLKKLVEKE_					0	0	0		ENST00000562640.1_1_16:22010196-22010523:+|nuORF	ENST00000562640.1_1_16:22010196-22010523:+|nuORF	ENST00000562640.1_1_16:22010196-22010523:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	543.3228759765625	2	542.342249	1082.66995	-2.1407	-0.001161	1.6331	0.00088569	-0.50766	-0.00027532	542.3429194295753	118.93	1.086	118.79	118.53	119.62	-0.14755					34	21	3	0	0	0	0.027462	1	11465	11465		16.473	0	1	32800			43054	13776	35592	35615	46515	46515					0.1319174857960661
PLKKQVLSF	9	Unmodified	_PLKKQVLSF_					0	0	0		nc|ENSG00000125447|Q9NZ52-3|GGA3	nc|ENSG00000125447|Q9NZ52-3|GGA3	nc|ENSG00000125447|Q9NZ52-3|GGA3	MULTI-MSMS	OvCa9_classI_Rep2	2	530.3309936523438	2	530.331685	1058.64882	0.10186	5.402E-05	-0.28124	-0.00014915	-0.17938	-9.5129E-05	530.331407055981	130.5	1.1434	130.27	129.96	131.1	-0.22697					41	22	3	0	0	0	0.51865	1	12828	12828		40.778	7.9657	1	159590			43055	15002	35593	35616	46516	46516					0.12183783270734239
PLKKSDAEPLL	11	Unmodified	_PLKKSDAEPLL_					0	0	0			REV__nc|ENSG00000130294|Q12756|KIF1A	REV__nc|ENSG00000130294|Q12756|KIF1A	MULTI-MSMS	OvCa9_classI_Rep3	3	605.8556518554688	2	605.855721	1209.69689	1.4544	0.00088118	-1.5967	-0.00096734	-0.14222	-8.6165E-05	605.8546440314993	133.02	1.7212	131.9	131.58	133.3	-1.1249					92	34	4	0	0	0	0.68021	1	10691	10691		36.447	6.129	1	499230	+		43056	18936	35594	35617	46517	46517					0.10042812400138246
PLKLERKAP	9	Unmodified	_PLKLERKAP_					0	0	0		ENST00000578258.5_1_17:15604467-15614659:+|nuORF;ENST00000585171.5_1_17:15603407-15638248:+|nuORF;nc|ENSG00000187607|Q9HBT8-2|ZNF286A;ENSG00000187607|ENST00000583566|ZNF286A	ENST00000578258.5_1_17:15604467-15614659:+|nuORF	ENST00000578258.5_1_17:15604467-15614659:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	526.3312377929688	2	526.334759	1050.65496	-2.6049	-0.001371	-1.5968	-0.00084047	-4.2017	-0.0022115	526.3337543990178	146.61	1.149	146.38	145.97	147.12	-0.22696					49	22	3	0	0	0	0.67509	1	14801	14801		23.042	3.6825	1	54679			43057	8417	35595	35618	46518	46518					0.13166301502269562
PLKLISTTK	9	Unmodified	_PLKLISTTK_					0	0	0			REV__SLITRK6|p.L747Pfs*49|1|0.08|ENSG00000184564|chr13:85794270-85794271|-/TATACATATAATATATGGAAGGGCATAAAGG|frameshift_variant	REV__SLITRK6|p.L747Pfs*49|1|0.08|ENSG00000184564|chr13:85794270-85794271|-/TATACATATAATATATGGAAGGGCATAAAGG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	500.8235778808594	2	500.823692	999.632832	1.0654	0.00053359	0.2043	0.00010232	1.2697	0.00063591	500.82361488266986	63.401	2.6056	60.367	60.113	62.718	-3.0339					105	51	3	0	0	0	0.69123	1	2403	2403		20.947	5.3107	1	62518	+		43058	22439	35596	35619	46519	46519					0.13300077033829893
PLKLLKTHD	9	Unmodified	_PLKLLKTHD_					0	0	0		ENSG00000147160|ENST00000276101|AWAT2	ENSG00000147160|ENST00000276101|AWAT2	ENSG00000147160|ENST00000276101|AWAT2	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.875	2	532.826766	1063.63898	-0.76483	-0.00040752	-0.74246	-0.0003956	-1.5073	-0.00080313	532.8263883569416	66.135	0.62758	66.135	65.904	66.531	0					31	15	3	0	0	0	0.027433	1	6152	6152		71.296	18.997	1	904590			43059	5336	35597	35620	46520	46520					0.1097059526537123
PLKLLLYLP	9	Unmodified	_PLKLLLYLP_					0	0	0			REV__ENST00000482167.1_1_2:198358096-198358177:-|nuORF	REV__ENST00000482167.1_1_2:198358096-198358177:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	535.3568725585938	2	535.354628	1068.6947	-0.14808	-7.9274E-05	4.4303	0.0023718	4.2822	0.0022925	535.3568693221736	22.771	0.46768	22.771	22.574	23.042	0					22	10	3	0	0	0	0.6926	1	249	249		20.482	0.48506	1	165260	+		43060	26495	35598	35621	46521	46521					0.16310428452970882
PLKLPPTPPL	10	Unmodified	_PLKLPPTPPL_					0	0	0			REV__HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|103|2|sense	REV__HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|103|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.86181640625	2	536.841885	1071.66922	2.2914	0.0012301	-2.4108	-0.0012942	-0.11948	-6.4142E-05	536.8410148695014	96.632	0.16759	96.632	96.501	96.668	0					5	3	2	0	0	0	0.027056	1	10583	10583		27.882	3.6795	1	164320	+		43061	28235	35599	35622	46522	46522					0.13624953930570882
PLKLQQTAF	9	Unmodified	_PLKLQQTAF_					0	0	0		ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3031616210938	2	523.305667	1044.59678	-0.69596	-0.0003642	-3.2951	-0.0017244	-3.9911	-0.0020886	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.69123	1	13992	13992		20.947	0.95016	1	130240			43062	5455	35600	35623	46523	46523					0.0762661985700106
PLKLTIQSRC	10	Unmodified	_PLKLTIQSRC_					0	0	0		tr|A0A553SHK3|A0A553SHK3_NIACIAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_13020PE=3SV=1	tr|A0A553SHK3|A0A553SHK3_NIACIAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_13020PE=3SV=1	tr|A0A553SHK3|A0A553SHK3_NIACIAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_13020PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.8377075195312	2	579.836808	1157.65906	-0.9155	-0.00053084	0.73119	0.00042397	-0.18431	-0.00010687	579.8372239940724	65.236	2.1385	61.751	61.407	63.546	-3.4854					125	43	5	0	0	0	0.50999	1	4712	4712		52.937	7.9145	1	2731200			43063	33280	35601	35624	46524	46524					0.08654022933683336
PLKPRVQNI	9	Unmodified	_PLKPRVQNI_					0	0	0			REV__nc|ENSG00000198625|O15151-5|MDM4	REV__nc|ENSG00000198625|O15151-5|MDM4	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.7861938476562	2	532.832383	1063.65021	0.020827	1.1097E-05	-0.19232	-0.00010248	-0.1715	-9.138E-05	532.8323047822274	71.013	0.22855	71.013	70.839	71.068	0					6	5	2	0	0	0	0.027462	1	6838	6838		24.203	0	1	334150	+		43064	23037	35602	35625	46525	46525					0.1209341735950602
PLKTYRVY	8	Unmodified	_PLKTYRVY_					0	0	0			REV__ENSG00000164961|ENST00000318410|WASHC5;REV__RTN4-KIAA0196|2|fusion	REV__RTN4-KIAA0196|2|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	520.3014526367188	2	520.300384	1038.58622	1.2388	0.00064456	0.93569	0.00048684	2.1745	0.0011314	520.30077540986	127.82	1.2935	127.82	127.36	128.65	0					54	27	3	0	0	0	0.52992	1	14814	14814		74.517	3.2209	1	561890	+		43065	29346;21043	35603	35626	46526	46526					0.06846637202556849
PLKVGETLKLN	11	Unmodified	_PLKVGETLKLN_					0	0	0		CON__P01030	CON__P01030	CON__P01030	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3696899414062	2	606.371538	1210.72852	-3.14	-0.001904	-0.05994	-3.6346E-05	-3.1999	-0.0019404	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.71498	1	14956	14956		24.519	0.31644	1	257720		+	43066	613	35604	35627	46527	46527					0.13158805154080255
PLKVKIYGN	9	Unmodified	_PLKVKIYGN_					0	0	0		ENST00000482646.5_1_10:35426742-35437470:+|nuORF	ENST00000482646.5_1_10:35426742-35437470:+|nuORF	ENST00000482646.5_1_10:35426742-35437470:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	516.3143310546875	2	516.316035	1030.61752	-5.397	-0.0027865	1.4148	0.00073048	-3.9822	-0.0020561	516.3166994253895	156.49	2.0589	155.32	154.75	156.81	-1.1707					101	49	4	0	0	0	0.61208	1	13451	13451		30.504	6.3009	1	710990			43067	12575	35605	35628	46528	46528					0.10343210236646883
PLKVTVQEL	9	Unmodified	_PLKVTVQEL_					0	0	0		ENSG00000064313|ENST00000378164|TAF2;TAF2|p.T931Lfs*29|1|0.07|ENSG00000064313|chr8:119756093-119756094|-/ATTTGGAAAAACAGAAATACAAATAG|frameshift_variant	ENSG00000064313|ENST00000378164|TAF2	ENSG00000064313|ENST00000378164|TAF2	MULTI-MSMS	OvCa9_classI_Rep3	3	513.8158569335938	2	513.813325	1025.6121	-0.17927	-9.2113E-05	3.3719	0.0017325	3.1926	0.0016404	513.8151245610528	74.922	2.6818	72.512	71.994	74.676	-2.4106					138	52	4	0	0	0	0.46377	1	3818	3818		45.952	6.6991	1	3292300			43068	1298	35606	35629	46529	46529					0.10031486654179389
PLLAADRPPF	10	Unmodified	_PLLAADRPPF_					0	0	0			REV__ENST00000606379.1_1_1:19401133-19401286:-|nuORF	REV__ENST00000606379.1_1_1:19401133-19401286:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.8086547851562	2	548.811116	1095.60768	0.3666	0.0002012	-4.2015	-0.0023058	-3.8349	-0.0021047	548.8086539011326	31.509	1.022	28.978	28.574	29.596	-2.5308					57	38	2	0	0	0	0.76627	1	708	708		23.042	2.0956	1	20104	+		43069	28077	35607	35630	46530	46530					0.06370022231271832
PLLDLHIEL	9	Unmodified	_PLLDLHIEL_					0	0	0		nc|ENSG00000003402|O15519-4|CFLAR;nc|ENSG00000003402|O15519-15|CFLAR;nc|ENSG00000003402|O15519-6|CFLAR;nc|ENSG00000003402|O15519-8|CFLAR;nc|ENSG00000003402|O15519-5|CFLAR;ENSG00000003402|ENST00000309955|CFLAR	nc|ENSG00000003402|O15519-4|CFLAR	nc|ENSG00000003402|O15519-4|CFLAR	MULTI-MSMS	OvCa99_classI_Rep5	1	531.8154907226562	2	531.813325	1061.6121	0.78495	0.00041744	0.84601	0.00044992	1.631	0.00086736	531.8139003524317	141.67	1.3473	141.67	141.44	142.78	0					58	26	4	0	0	0	0.062324	1	16544	16544		111.65	34.802	1	329330			43070	820	35608	35631	46531	46531					0.08375486654176711
PLLDWQGIF	9	Unmodified	_PLLDWQGIF_					0	0	0		ENSG00000226887|ENST00000443173|ERVMER34-1	ENSG00000226887|ENST00000443173|ERVMER34-1	ENSG00000226887|ENST00000443173|ERVMER34-1	MULTI-MSMS	OvCa99_classI_Rep5	1	544.7944946289062	2	544.792392	1087.57023	2.2483	0.0012249	-0.20784	-0.00011323	2.0405	0.0011116	544.7920843844432	100.51	1.627	100.51	99.856	101.48	0					84	38	4	0	0	0	0.22961	1	11152	11152		71.296	4.8664	1	15408000			43071	9274	35609	35632	46532	46532					0.029949309656331025
PLLEEHRQ	8	Unmodified	_PLLEEHRQ_					0	0	0			REV__ENST00000338779.10_1_16:70714719-70719815:-|nuORF	REV__ENST00000338779.10_1_16:70714719-70719815:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	511.2749938964844	2	511.274898	1020.53524	-0.09583	-4.8995E-05	-0.70142	-0.00035862	-0.79725	-0.00040761	511.2743643078174	45.282	1.15	42.572	42.248	43.399	-2.7097					45	21	3	0	0	0	0.65582	1	2629	2629		52.299	8.1824	1	142630	+		43072	24611	35610	35633	46533	46533					0.0257968815770937
PLLGRCLQP	9	Unmodified	_PLLGRCLQP_					0	0	0			REV__ENST00000316846.2_11:65545618-65547282:-|nuORF	REV__ENST00000316846.2_11:65545618-65547282:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.7441101074219	2	498.786587	995.558621	-0.26461	-0.00013198	-2.6904	-0.001342	-2.955	-0.0014739	498.7850897352696	73.414	0.78779	73.414	73.195	73.983	0					39	19	3	0	0	0	0.027462	1	7256	7256		31.955	2.8053	1	863080	+		43073	23517	35611	35634	46534	46534					0.06066410670666755
PLLHSPPPPPR	11	Unmodified	_PLLHSPPPPPR_					0	0	0		ENST00000316448.9_1_19:13054757-13054979:+|nuORF	ENST00000316448.9_1_19:13054757-13054979:+|nuORF	ENST00000316448.9_1_19:13054757-13054979:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	403.68756103515625	3	403.236385	1206.68733	1.8881	0.00076134	3.2563	0.0013131	5.1444	0.0020744	403.2387778034015	45.593	0.61034	45.593	45.413	46.024	0					22	13	3	0	0	0	0.025864	1	3146	3146		28.577	11.859	1	89647			43074	10345	35612	35635	46535	46535					0.09225088905259327
PLLIARVW	8	Unmodified	_PLLIARVW_					0	0	0			REV__nc|ENSG00000130702|O15230-2|LAMA5	REV__nc|ENSG00000130702|O15230-2|LAMA5	MULTI-SECPEP	OvCa9_classI_Rep2	2	484.8164367675781	2	484.308013	966.601472	-1.0881	-0.00052699	-3.1062	-0.0015044	-4.1943	-0.0020314	484.30626965868277	55.183	1.1462	52.369	51.822	52.968	-2.8139					36	22	3	0	0	0	0.028476	1	3887	3887		23.037	0	1	31909	+		43075	28848	35613	35636	46536	46536					0.11683548790415443
PLLIASKTK	9	Unmodified	_PLLIASKTK_					0	0	0		ENST00000557447.5_1_14:63757953-63758103:+|nuORF	ENST00000557447.5_1_14:63757953-63758103:+|nuORF	ENST00000557447.5_1_14:63757953-63758103:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.7945556640625	2	485.81841	969.622267	-0.39626	-0.00019251	-2.551	-0.0012393	-2.9473	-0.0014318	485.81714929802513	41.25	0.31559	41.25	41.104	41.42	0					11	6	2	0	0	0	0.027462	1	2578	2578		14.865	4.5996	1	66551			43076	13685	35614	35637	46537	46537					0.13624094379417784
PLLIRLVNCGF	11	Unmodified	_PLLIRLVNCGF_					0	0	0			REV__ENSG00000182093|ENST00000649170|GET1	REV__ENSG00000182093|ENST00000649170|GET1	MULTI-MSMS	OvCa9_classI_Rep4_	4	622.8649291992188	2	622.862826	1243.7111	4.0056	0.002495	1.4659	0.00091303	5.4715	0.003408	622.8636174332638	131.98	1.7037	130.48	130.08	131.78	-1.5014					90	33	4	0	0	0	0.68684	1	12745	12745		34.173	5.0025	1	330550	+		43077	22261	35615	35638	46538	46538					0.09899186347433897
PLLIYTFV	8	Unmodified	_PLLIYTFV_					0	0	0			REV__SCN4A|p.I1075_F1076insLLPWPPKVLG|1|0.3|ENSG00000007314|chr17:63947982-63947983|-/TCCCAGCACTTTGGGAGGCCAAGGTAGGAG|inframe_insertion	REV__SCN4A|p.I1075_F1076insLLPWPPKVLG|1|0.3|ENSG00000007314|chr17:63947982-63947983|-/TCCCAGCACTTTGGGAGGCCAAGGTAGGAG|inframe_insertion	MULTI-MSMS	OvCa9_classI_Rep4_	4	483.2873229980469	2	483.288954	964.563355	-0.63237	-0.00030562	-3.5853	-0.0017327	-4.2177	-0.0020384	483.2870191225468	99.205	1.2798	96.88	96.536	97.816	-2.3253					63	24	3	0	0	0	0.63104	1	8849	8849		57.453	2.688	1	215720	+		43078	29348	35616	35639	46539	46539					0.07965618085097503
PLLIYTFV	8	Unmodified	_PLLIYTFV_					0	0	0			REV__SCN4A|p.I1075_F1076insLLPWPPKVLG|1|0.3|ENSG00000007314|chr17:63947982-63947983|-/TCCCAGCACTTTGGGAGGCCAAGGTAGGAG|inframe_insertion	REV__SCN4A|p.I1075_F1076insLLPWPPKVLG|1|0.3|ENSG00000007314|chr17:63947982-63947983|-/TCCCAGCACTTTGGGAGGCCAAGGTAGGAG|inframe_insertion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	483.288954	964.563355	-0.29969	-0.00014484	-3.7084	-0.0017922	-4.0081	-0.0019371	483.2870140690224	97.774	1.2785	96.815	96.513	97.791	-0.95857	-0.033049	-9.2826E-05	NaN	57.453	60	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163940	+		43079	29348	35616	35639							0.07965618085097503
PLLIYTFV	8	Unmodified	_PLLIYTFV_					0	0	0			REV__SCN4A|p.I1075_F1076insLLPWPPKVLG|1|0.3|ENSG00000007314|chr17:63947982-63947983|-/TCCCAGCACTTTGGGAGGCCAAGGTAGGAG|inframe_insertion	REV__SCN4A|p.I1075_F1076insLLPWPPKVLG|1|0.3|ENSG00000007314|chr17:63947982-63947983|-/TCCCAGCACTTTGGGAGGCCAAGGTAGGAG|inframe_insertion	MULTI-MATCH	OvCa9_classI_Rep3	3		2	483.288954	964.563355	-0.36786	-0.00017778	-3.4956	-0.0016894	-3.8635	-0.0018672	483.28703661119	98.582	1.4432	96.85	96.547	97.99	-1.7324	0.0013099	0.00011287	NaN	57.453	67	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218530	+		43080	29348	35616	35639							0.07965618085097503
PLLIYTFV	8	Unmodified	_PLLIYTFV_					0	0	0			REV__SCN4A|p.I1075_F1076insLLPWPPKVLG|1|0.3|ENSG00000007314|chr17:63947982-63947983|-/TCCCAGCACTTTGGGAGGCCAAGGTAGGAG|inframe_insertion	REV__SCN4A|p.I1075_F1076insLLPWPPKVLG|1|0.3|ENSG00000007314|chr17:63947982-63947983|-/TCCCAGCACTTTGGGAGGCCAAGGTAGGAG|inframe_insertion	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	483.288954	964.563355	-0.63237	-0.00030562	-3.5853	-0.0017327	-4.2177	-0.0020384	483.2870191225468	99.205	1.2798	96.88	96.536	97.816	-2.3253	0.031739	2.6181E-05	NaN	57.453	63	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215720	+		43081	29348	35616	35639							0.07965618085097503
PLLKGRSIH	9	Unmodified	_PLLKGRSIH_					0	0	0			REV__nc|ENSG00000131844|Q9HCC0-2|MCCC2	REV__nc|ENSG00000131844|Q9HCC0-2|MCCC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.276123046875	2	510.819276	1019.624	-1.082	-0.0005527	1.1856	0.00060565	0.10364	5.2942E-05	510.8194448890813	45.798	1.251	42.759	42.438	43.689	-3.0385					34	23	2	0	0	0	0.027462	1	2325	2325		31.955	14.59	1	103100	+		43082	19037	35617	35640	46540	46540					0.11497148188038864
PLLLDKPNAQ	10	Unmodified	_PLLLDKPNAQ_					0	0	0		nc|ENSG00000149541|O94766-2|B3GAT3;ENST00000532585.5_1_11:62383175-62388587:-|nuORF;ENSG00000149541|ENST00000265471|B3GAT3	nc|ENSG00000149541|O94766-2|B3GAT3	nc|ENSG00000149541|O94766-2|B3GAT3	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.3624877929688	2	554.821681	1107.62881	2.3477	0.0013025	-0.17688	-9.8136E-05	2.1708	0.0012044	555.323334042002	76.441	1.6512	76.441	75.601	77.252	0					52	40	2	0	0	0	0.026665	1	7580	7580		51.335	17.163	1	323930			43083	5469	35618	35641	46541	46541					0.0792998754011478
PLLLGCRDR	9	Unmodified	_PLLLGCRDR_					0	0	0		ENST00000594671.5_1_19:4676136-4676472:-|nuORF	ENST00000594671.5_1_19:4676136-4676472:-|nuORF	ENST00000594671.5_1_19:4676136-4676472:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.2828369140625	2	521.794943	1041.57533	-0.50982	-0.00026602	1.0726	0.00055965	0.56273	0.00029363	522.2953224535872	68.856	0.58173	68.856	68.481	69.063	0					20	12	2	0	0	0	0.027462	1	6528	6528		25.45	4.5032	1	481900			43084	14167	35619	35642	46542	46542					0.05620911556616193
PLLLLLLWAP	10	Unmodified	_PLLLLLLWAP_					0	0	0		COL5A1|p.Q491Hfs*125|1|0.14|ENSG00000130635|chr9:134738786-134738787|-/C|frameshift_variant;COL5A1|p.E1571Rfs*53|1|0.06|ENSG00000130635|chr9:134823462-134823463|-/C|frameshift_variant;nc|ENSG00000130635|P20908-2|COL5A1;ENSG00000130635|ENST00000371817|COL5A1	COL5A1|p.Q491Hfs*125|1|0.14|ENSG00000130635|chr9:134738786-134738787|-/C|frameshift_variant	COL5A1|p.Q491Hfs*125|1|0.14|ENSG00000130635|chr9:134738786-134738787|-/C|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	574.8384399414062	2	574.875728	1147.7369	-0.75165	-0.0004321	2.1035	0.0012092	1.3519	0.00077715	574.876309426052	91.277	0.25687	88.734	88.605	88.862	-2.5425					5	4	2	0	0	0	0.027007	1	7884	7884		19.36	0	1	6532.7			43085	596	35620	35643	46543	46543					0.16894403861374485
PLLLPAVFA	9	Unmodified	_PLLLPAVFA_					0	0	0		ENST00000496629.1_1_8:38323118-38323238:-|nuORF	ENST00000496629.1_1_8:38323118-38323238:-|nuORF	ENST00000496629.1_1_8:38323118-38323238:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.26544189453125	2	470.796946	939.57934	-0.39083	-0.000184	-3.4534	-0.0016259	-3.8443	-0.0018099	470.7947947262809	38.253	0.37122	38.253	38.114	38.486	0					10	7	2	0	0	0	0.027462	1	2168	2168		14.664	0	1	27005			43086	12791	35621	35644	46544	46544					0.10713324321989148
PLLLPDLR	8	Unmodified	_PLLLPDLR_					0	0	0			REV__nc|ENSG00000118263|O75840-2|KLF7	REV__nc|ENSG00000118263|O75840-2|KLF7	MULTI-SECPEP	OvCa9_classI_Rep2	2	469.27593994140625	2	468.797478	935.580402	-0.33627	-0.00015764	0.11104	5.2056E-05	-0.22523	-0.00010559	468.7975968918747	77.735	0.62925	75.945	75.727	76.356	-1.7894					15	11	2	0	0	0	0.028476	1	6456	6456		44.531	0	1	17018	+		43087	18389	35622	35645	46545	46545					0.11003538690897585
PLLLPDLR	8	Unmodified	_PLLLPDLR_					0	0	0			REV__nc|ENSG00000118263|O75840-2|KLF7	REV__nc|ENSG00000118263|O75840-2|KLF7	MULTI-MATCH	OvCa9_classI_Rep3	3		2	468.797478	935.580402	-0.28884	-0.00013541	-0.010871	-5.0965E-06	-0.29971	-0.00014051	468.79734928438074	78.158	0.60324	75.805	75.546	76.149	-2.3527	-0.14763	0.00021939	NaN	35.201	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16777	+		43088	18389	35622	35645							0.11003538690897585
PLLLPDLR	8	Unmodified	_PLLLPDLR_					0	0	0			REV__nc|ENSG00000118263|O75840-2|KLF7	REV__nc|ENSG00000118263|O75840-2|KLF7	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	468.797478	935.580402	0.32341	0.00015161	-1.1224	-0.00052619	-0.79902	-0.00037458	468.79689903447024	78.859	0.47299	76.108	75.945	76.418	-2.7514	0.15513	-0.0008228	NaN	35.201	10	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18462	+		43089	18389	35622	35645							0.11003538690897585
PLLLPSPPD	9	Unmodified	_PLLLPSPPD_					0	0	0			REV__ENSG00000130701|ENST00000252998|RBBP8NL	REV__ENSG00000130701|ENST00000252998|RBBP8NL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	474.22564697265625	2	474.773668	947.532783	1.4176	0.00067302	-3.2413	-0.0015389	-1.8238	-0.00086588	474.77187952445524	86.656	1.6904	84.03	83.613	85.303	-2.6269					50	33	2	0	0	0	0.027462	1	7413	7413		40.573	16.37	1	132400	+		43090	18960	35623	35646	46546	46546					0.056918397000458754
PLLLPSPPD	9	Unmodified	_PLLLPSPPD_					0	0	0			REV__ENSG00000130701|ENST00000252998|RBBP8NL	REV__ENSG00000130701|ENST00000252998|RBBP8NL	MULTI-MATCH	OvCa9_classI_Rep2	2		2	474.773668	947.532783	-1.4347	-0.00068114	0.70388	0.00033419	-0.73077	-0.00034695	474.7738071067908	85.536	1.618	84.045	83.604	85.222	-1.4906	0.061561	0.00065877	NaN	40.573	60	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75237	+		43091	18960	35623	35646							0.056918397000458754
PLLLPSPPD	9	Unmodified	_PLLLPSPPD_					0	0	0			REV__ENSG00000130701|ENST00000252998|RBBP8NL	REV__ENSG00000130701|ENST00000252998|RBBP8NL	MULTI-MATCH	OvCa9_classI_Rep3	3		2	474.773668	947.532783	-0.26576	-0.00012617	0.2975	0.00014125	0.031746	1.5072E-05	474.77367164074883	86.097	1.6102	83.876	83.536	85.146	-2.2204	-0.10737	0.00027289	NaN	40.573	47	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136010	+		43092	18960	35623	35646							0.056918397000458754
PLLLRPRPQ	9	Unmodified	_PLLLRPRPQ_					0	0	0			REV__ENST00000503131.1_2_17:48206901-48207210:-|nuORF	REV__ENST00000503131.1_2_17:48206901-48207210:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.2694091796875	2	545.3482	1088.68185	-0.77585	-0.00042311	0.95041	0.0005183	0.17455	9.5192E-05	545.34847270353	59.446	0.95039	59.446	58.852	59.802	0					63	24	3	0	0	0	0.027462	1	5048	5048		12.207	0	1	1578900	+		43093	26840	35624	35647	46547	46547					0.14105410113438666
PLLLRRPL	8	Unmodified	_PLLLRRPL_					0	0	0		ENSG00000173988|ENST00000595396|LRRC63;ENST00000356388.8_1_2:65659243-65659279:-|nuORF	ENSG00000173988|ENST00000595396|LRRC63	ENSG00000173988|ENST00000595396|LRRC63	MULTI-SECPEP	OvCa9_classI_Rep3	3	489.3111267089844	2	489.334562	976.65457	-1.1034	-0.00053996	0.26635	0.00013033	-0.8371	-0.00040962	489.3344507447807	95.706	0.49049	93.877	93.682	94.172	-1.8286					12	9	2	0	0	0	0.028476	1	6276	6276		9.4706	0	1	15796			43094	7430	35625	35648	46548	46548					0.16530926573068427
PLLLSLLIE	9	Unmodified	_PLLLSLLIE_					0	0	0			REV__nc|ENSG00000124678|Q8WWU5-3|TCP11	REV__nc|ENSG00000124678|Q8WWU5-3|TCP11	MULTI-MSMS	OvCa9_classI_Rep3	3	505.8263244628906	2	505.828443	1009.64233	-1.2195	-0.00061688	-1.7839	-0.00090234	-3.0034	-0.0015192	505.8274041320969	77.702	2.9828	75.35	74.262	77.244	-2.3527					140	58	4	0	0	0	0.53957	1	4052	4052		38.806	0	1	813550	+		43095	18701	35626	35649	46549	46549					0.13789845319365668
PLLNVIHIT	9	Unmodified	_PLLNVIHIT_					0	0	0		tr|A0A7D6ZKB1|A0A7D6ZKB1_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06715PE=4SV=1	tr|A0A7D6ZKB1|A0A7D6ZKB1_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06715PE=4SV=1	tr|A0A7D6ZKB1|A0A7D6ZKB1_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06715PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.8439025878906	2	510.316035	1018.61752	0.06743	3.4411E-05	-1.6126	-0.00082293	-1.5452	-0.00078852	510.81720113692967	123.5	0.3924	123.26	123.14	123.53	-0.23193					9	7	2	0	0	0	0.027462	1	11999	11999		34.173	5.023	1	9434			43096	35661	35627	35650	46550	46550					0.10895210236662933
PLLPKNPID	9	Unmodified	_PLLPKNPID_					0	0	0			REV__tr|A0A553SMC8|A0A553SMC8_NIACIbeta-glucosidaseOS=NialliacirculansOX=1397GN=bglXPE=3SV=1	REV__tr|A0A553SMC8|A0A553SMC8_NIACIbeta-glucosidaseOS=NialliacirculansOX=1397GN=bglXPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.7965393066406	2	503.800217	1005.58588	-0.040998	-2.0655E-05	-0.63839	-0.00032162	-0.67939	-0.00034228	503.79985316809575	56.898	0.56205	56.898	56.702	57.264	0					23	12	3	0	0	0	0.027462	1	4730	4730		30.504	0	1	863950	+		43097	30316	35628	35651	46551	46551					0.08331217482702868
PLLPRHELN	9	Unmodified	_PLLPRHELN_					0	0	0		ARID1B|p.M1952Ifs*32|1|0.22|ENSG00000049618|chr6:157207035-157207036|-/A|frameshift_variant;ARID1B|p.K1964Tfs*20|1|0.51|ENSG00000049618|chr6:157207070-157207071|-/C|frameshift_variant;nc|ENSG00000049618|Q8NFD5|ARID1B;nc|ENSG00000049618|Q8NFD5-2|ARID1B;ENSG00000049618|ENST00000636930|ARID1B	ARID1B|p.M1952Ifs*32|1|0.22|ENSG00000049618|chr6:157207035-157207036|-/A|frameshift_variant	ARID1B|p.M1952Ifs*32|1|0.22|ENSG00000049618|chr6:157207035-157207036|-/A|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8236083984375	2	544.81419	1087.61383	2.5227	0.0013744	2.6036	0.0014185	5.1264	0.0027929	544.8140292330825	75.264	0.35696	75.264	75.087	75.444	0					17	8	3	0	0	0	0.027462	1	7505	7505		30.504	1.3541	1	578790			43098	114	35629	35652	46552	46552					0.07352540462807156
PLLQAIYRGS	10	Unmodified	_PLLQAIYRGS_					0	0	0			REV__ENSG00000171094|ENST00000389048|ALK	REV__ENSG00000171094|ENST00000389048|ALK	MULTI-MSMS	OvCa9_classI_Rep2	2	559.3198852539062	2	559.321848	1116.62914	0.41481	0.00023201	-0.30046	-0.00016805	0.11435	6.3957E-05	559.3203026302189	31.753	0.79087	29.043	28.789	29.58	-2.7097					35	15	3	0	0	0	0.74374	1	1009	1009		25.574	2.0514	1	39216	+		43099	21590	35630	35653	46553	46553					0.07549407259966756
PLLRLPVLL	9	Unmodified	_PLLRLPVLL_					0	0	0		ENST00000532529.1_1_11:101827229-101827448:+|nuORF	ENST00000532529.1_1_11:101827229-101827448:+|nuORF	ENST00000532529.1_1_11:101827229-101827448:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3599243164062	2	517.360245	1032.70594	0.038556	1.9947E-05	-0.44941	-0.00023251	-0.41085	-0.00021256	517.3599133873521	135.24	1.9126	135.01	134.59	136.5	-0.22696					104	38	4	0	0	0	0.53957	1	13408	13408		38.806	3.1879	1	602160			43100	13325	35631	35654	46554	46554					0.1908925054710835
PLLRLPVLL	9	Unmodified	_PLLRLPVLL_					0	0	0		ENST00000532529.1_1_11:101827229-101827448:+|nuORF	ENST00000532529.1_1_11:101827229-101827448:+|nuORF	ENST00000532529.1_1_11:101827229-101827448:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	517.3598022460938	2	517.360245	1032.70594	-0.63272	-0.00032734	0.17774	9.1954E-05	-0.45498	-0.00023539	517.3601946717101	136.63	2.1947	135.53	135.15	137.35	-1.1023					115	44	4	0	0	0	0.32337	4	11170	11085;11103;11115;11170		60.294	9.8957	1	468020			43101	13325	35631	35654	46555;46556;46557;46558	46558					0.1908925054710835
PLLSLRKKQKP	11	Unmodified	_PLLSLRKKQKP_					0	0	0			REV__ENST00000337132.9_1_1:16785679-16785925:+|nuORF	REV__ENST00000337132.9_1_1:16785679-16785925:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	436.2143249511719	3	436.62224	1306.84489	-0.88466	-0.00038626	-1.0845	-0.0004735	-1.9691	-0.00085976	436.62165136093614	38.407	1.0896	35.697	35.32	36.41	-2.7097					40	21	3	0	0	0	0.025864	1	1867	1867		35.178	9.1148	1	30800	+		43102	24593	35632	35655	46559	46559					0.20374168444641327
PLLSLRKKQKP	11	Unmodified	_PLLSLRKKQKP_					0	0	0			REV__ENST00000337132.9_1_1:16785679-16785925:+|nuORF	REV__ENST00000337132.9_1_1:16785679-16785925:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	436.62224	1306.84489	0.72582	0.00031691	-2.943	-0.001285	-2.2172	-0.00096806	436.6209424570492	38.285	1.0896	35.358	35.007	36.097	-2.9264	-0.16942	-0.0011962	NaN	35.178	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31301	+		43103	24593	35632	35655							0.20374168444641327
PLLSTLHLQV	10	Unmodified	_PLLSTLHLQV_					0	0	0			REV__ENST00000300976.8_1_19:18780088-18780439:+|nuORF	REV__ENST00000300976.8_1_19:18780088-18780439:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.3275146484375	2	560.839874	1119.66519	2.3793	0.0013344	-0.72634	-0.00040736	1.6529	0.00092702	560.8394353208025	87.299	0.94844	87.299	87.054	88.003	0					45	22	4	0	0	0	0.026871	1	9286	9286		29.15	18.284	1	1834400	+		43104	24240	35633	35656	46560	46560					0.11014864436833705
PLLTFEILL	9	Unmodified	_PLLTFEILL_					0	0	0		ENSG00000269556|ENST00000600449|TMEM185A;ENST00000524311.1_1_X:148850572-148853026:+|nuORF	ENSG00000269556|ENST00000600449|TMEM185A	ENSG00000269556|ENST00000600449|TMEM185A	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.3321533203125	2	529.828443	1057.64233	3.1683	0.0016787	3.0708	0.001627	6.2392	0.0033057	529.8320961796451	131.94	1.8053	130.44	130.12	131.93	-1.5014					94	35	5	0	0	0	0.64339	1	12722	12722		26.796	6.3143	1	145640			43105	9542	35634	35657	46561	46561					0.11581845319392414
PLLTSPDFNT	10	Unmodified	_PLLTSPDFNT_					0	0	0			REV__ENSG00000133742|ENST00000523022|CA1	REV__ENSG00000133742|ENST00000523022|CA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.8139038085938	2	552.782222	1103.54989	-0.18988	-0.00010496	-3.4157	-0.0018881	-3.6056	-0.0019931	552.7802187666587	71.173	0.79244	71.173	70.915	71.707	0					33	19	3	0	0	0	0.02676	1	6895	6895		33.922	0	1	1373700	+		43106	19156	35635	35658	46562	46562					0.0022571551517103217
PLLVLYDLL	9	Unmodified	_PLLVLYDLL_					0	0	0			REV__nc|ENSG00000053747|Q16787-3|LAMA3	REV__nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.7783203125	2	529.828443	1057.64233	-1.7058	-0.00090378	-4.0978	-0.0021711	-5.8036	-0.0030749	529.8250799813485	95.169	0.35078	92.701	92.511	92.861	-2.4685					10	6	2	0	0	0	0.027462	1	8354	8354		26.796	1.3459	1	15651	+		43107	16695	35636	35659	46563	46563					0.11581845319369677
PLLWRGIILM	10	Unmodified	_PLLWRGIILM_					0	0	0			REV__nc|ENSG00000196932|Q6ZUK4-2|TMEM26	REV__nc|ENSG00000196932|Q6ZUK4-2|TMEM26	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3700561523438	2	606.370287	1210.72602	-0.26856	-0.00016285	-0.74143	-0.00044958	-1.01	-0.00061243	606.369699493104	145.24	3.8933	143.8	141.64	145.53	-1.4357					226	74	4	0	0	0	0.75594	1	14363	14363		24.203	1.6231	1	336140	+		43108	22876	35637	35660	46564	46564					0.12908678215444525
PLLYHLGKIP	10	Unmodified	_PLLYHLGKIP_					0	0	0			REV__ENST00000334690.10_1_4:184605887-184605989:+|nuORF	REV__ENST00000334690.10_1_4:184605887-184605989:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.8186645507812	2	575.852784	1149.69102	-0.91844	-0.00052889	-2.1608	-0.0012443	-3.0792	-0.0017732	575.8519263367764	93.976	0.23148	91.469	91.348	91.579	-2.5072					5	4	2	0	0	0	0.026871	1	8200	8200		37.159	17.162	1	20298	+		43109	24571	35638	35661	46565	46565					0.12215758679121791
PLLYTVLLL	9	Unmodified	_PLLYTVLLL_					0	0	0			REV__ENSG00000119973|ENST00000239032|PRLHR	REV__ENSG00000119973|ENST00000239032|PRLHR	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8148803710938	2	522.838811	1043.66307	1.3115	0.00068571	-2.5157	-0.0013153	-1.2042	-0.00062961	522.8380279956829	107.2	0.2942	107.2	107.1	107.4	0					11	6	2	0	0	0	0.027462	1	12094	12094		13.775	0	1	338590	+		43110	18479	35639	35662	46566	46566					0.14298435699038237
PLMGFRDPSP	10	Unmodified	_PLMGFRDPSP_					0	0	0			REV__nc|ENSG00000091732|Q86WB0-3|ZC3HC1	REV__nc|ENSG00000091732|Q86WB0-3|ZC3HC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.8283081054688	2	558.778959	1115.54336	1.1181	0.00062477	-2.2946	-0.0012822	-1.1765	-0.00065742	558.7787563596113	109.77	0.31712	108.17	107.96	108.28	-1.6011					8	5	2	0	0	0	0.02663	1	10090	10090		69.628	13.194	1	9348.5	+		43111	17256	35640	35663	46567	46567					-0.009785009171764614
PLMGFRDPSP	10	Unmodified	_PLMGFRDPSP_					0	0	0			REV__nc|ENSG00000091732|Q86WB0-3|ZC3HC1	REV__nc|ENSG00000091732|Q86WB0-3|ZC3HC1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	558.778959	1115.54336	0.64052	0.00035791	-0.58367	-0.00032614	0.056849	3.1766E-05	559.2792017626334	108.3	0.24796	108.07	107.88	108.12	-0.22498	-0.036856	0.0006277	NaN	60.118	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4882.2	+		43112	17256	35640	35663							-0.009785009171764614
PLMKKNLLKQ	10	Unmodified	_PLMKKNLLKQ_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	404.922119140625	3	404.921409	1211.7424	2.5517	0.0010332	1.03	0.00041707	3.5817	0.0014503	404.92161556523627	36.627	1.0956	33.734	33.496	34.591	-2.8925					43	21	3	0	0	0	0.59317	1	1277	1277		42.864	8.9426	1	72922	+		43113	22731	35641	35664	46568	46568					0.14499759381533295
PLMKKNLLKQ	10	Unmodified	_PLMKKNLLKQ_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MATCH	OvCa9_classI_Rep2	2		3	404.921409	1211.7424	-1.3274	-0.0005375	4.9064	0.0019867	3.579	0.0014492	404.9231324465092	36.747	0.6407	34.037	33.745	34.386	-2.7097	0.15131	0.0037754	NaN	42.864	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17017	+		43114	22731	35641	35664							0.14499759381533295
PLMKKNLLKQ	10	Unmodified	_PLMKKNLLKQ_					0	0	0			REV__ENSG00000188738|ENST00000424728|FSIP2	REV__ENSG00000188738|ENST00000424728|FSIP2	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		3	404.921409	1211.7424	2.5517	0.0010332	1.03	0.00041707	3.5817	0.0014503	404.92161556523627	36.627	1.0956	33.734	33.496	34.591	-2.8925	-0.15131	-0.00093351	NaN	42.864	43	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72922	+		43115	22731	35641	35664							0.14499759381533295
PLMPGMPPGMP	11	Unmodified	_PLMPGMPPGMP_					0	0	0		nc|ENSG00000010244|O43670-3|ZNF207;nc|ENSG00000010244|O43670-2|ZNF207;nc|ENSG00000010244|O43670|ZNF207;ENSG00000010244|ENST00000394670|ZNF207;ENST00000582705.1_1_17:30689933-30692512:+|nuORF	nc|ENSG00000010244|O43670-3|ZNF207	nc|ENSG00000010244|O43670-3|ZNF207	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.325927734375	2	562.768691	1123.52283	3.0865	0.001737	1.2346	0.00069478	4.321	0.0024317	562.7692197590723	100.63	0.74818	100.63	100.44	101.19	0					32	17	2	0	0	0	0.025652	1	11227	11227		31.955	15.482	1	1918400			43116	940	35642	35665	46569	46569					-0.033991308928534636
PLMWIPLRLL	10	Unmodified	_PLMWIPLRLL_					0	0	0			REV__ENST00000547808.5_1_12:57033849-57039747:-|nuORF	REV__ENST00000547808.5_1_12:57033849-57039747:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	417.9096984863281	3	417.926383	1250.75732	0.60627	0.00025338	-3.6194	-0.0015126	-3.0131	-0.0012593	417.92487285456883	34.787	0.7545	31.999	31.797	32.551	-2.7881					30	14	3	0	0	0	0.027028	1	1101	1101		39.253	12.206	1	26988	+		43117	27434	35643	35666	46570	46570					0.14197251249538567
PLNEVNSFPQK	11	Unmodified	_PLNEVNSFPQK_					0	0	0		nc|ENSG00000028116|Q86Y07-4|VRK2;nc|ENSG00000028116|Q86Y07-3|VRK2;ENSG00000028116|ENST00000340157|VRK2	nc|ENSG00000028116|Q86Y07-4|VRK2	nc|ENSG00000028116|Q86Y07-4|VRK2	MULTI-MSMS	OvCa9_classI_Rep2	2	636.8314208984375	2	636.832777	1271.651	-1.7858	-0.0011373	-0.35813	-0.00022807	-2.144	-0.0013654	636.8324728974585	33.272	1.1921	30.562	30.321	31.513	-2.7097					69	23	4	0	0	0	0.57493	1	1193	1193		61.691	17.314	1	314610			43118	1057	35644	35667	46571	46571					0.02604167217896247
PLNGIVIRPT	10	Unmodified	_PLNGIVIRPT_					0	0	0			REV__sp|P16729|MCP_HCMVAMajorcapsidproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=MCPPE=1SV=1	REV__sp|P16729|MCP_HCMVAMajorcapsidproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=MCPPE=1SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3311157226562	2	540.332216	1078.64988	-1.2676	-0.00068491	-2.6392	-0.001426	-3.9067	-0.0021109	540.3307152267141	139.22	4.0818	138.16	137	141.08	-1.0595					200	82	3	0	0	0	0.6349	1	11359	11359		37.812	4.9991	1	55828	+		43119	29414	35645	35668	46572	46572					0.11369997639667417
PLNIKDILKGT	11	Unmodified	_PLNIKDILKGT_					0	0	0			REV__ENSG00000158023|ENST00000288912|CFAP251	REV__ENSG00000158023|ENST00000288912|CFAP251	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3701171875	2	606.371538	1210.72852	-2.264	-0.0013728	-1.0272	-0.00062285	-3.2912	-0.0019957	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.7046	1	12529	12529		28.081	6.1216	1	205770	+		43120	20545	35646	35669	46573	46573					0.13158805154057518
PLNKGKLLLAS	11	Unmodified	_PLNKGKLLLAS_					0	0	0			REV__ENSG00000182348|ENST00000333190|ZNF804B	REV__ENSG00000182348|ENST00000333190|ZNF804B	MULTI-MSMS	OvCa9_classI_Rep2	2	577.3684692382812	2	577.368798	1152.72304	-0.0015386	-8.8833E-07	-0.31024	-0.00017912	-0.31177	-0.00018001	577.368591979319	125.62	1.9266	125.38	125.01	126.94	-0.2359					114	38	5	0	0	0	0.60323	1	12262	12262		44.377	2.0391	1	983740	+		43121	22286	35647	35670	46574	46574					0.15279126362293027
PLNKQPVLTSH	11	Unmodified	_PLNKQPVLTSH_					0	0	0		chr2:132662924-132668400|264|13.22|0.0|14.43|-|0|None,LYPD1|2	chr2:132662924-132668400|264|13.22|0.0|14.43|-|0|None,LYPD1|2	chr2:132662924-132668400|264|13.22|0.0|14.43|-|0|None,LYPD1|2	MULTI-MSMS	OvCa9_classI_Rep4_	4	617.349853515625	2	617.351137	1232.68772	-3.3769	-0.0020847	1.5615	0.000964	-1.8154	-0.0011207	617.35192186902	152.13	1.4228	150.69	150.33	151.75	-1.435					86	30	4	0	0	0	0.67529	2	15041	15041;15053		37.812	1.3648	1	233800			43122	428	35648	35671	46575;46576	46575					0.08068463834479189
PLNKQPVLTSH	11	Unmodified	_PLNKQPVLTSH_					0	0	0		chr2:132662924-132668400|264|13.22|0.0|14.43|-|0|None,LYPD1|2	chr2:132662924-132668400|264|13.22|0.0|14.43|-|0|None,LYPD1|2	chr2:132662924-132668400|264|13.22|0.0|14.43|-|0|None,LYPD1|2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	617.351137	1232.68772	-3.6907	-0.0022785	2.1407	0.0013215	-1.5501	-0.00095694	617.3521747528712	151.66	1.0582	150.71	150.4	151.46	-0.95645	0.0084929	0.00042938	NaN	37.812	46	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89984			43123	428	35648	35671							0.08068463834479189
PLNLLMHN	8	Unmodified	_PLNLLMHN_					0	0	0			REV__ENST00000535011.6_1_7:128410370-128410973:+|nuORF	REV__ENST00000535011.6_1_7:128410370-128410973:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.3128967285156	2	476.257662	950.500772	0.17162	8.1736E-05	-4.0497	-0.0019287	-3.8781	-0.001847	476.2554573613818	104.99	1.3153	102.87	102.38	103.69	-2.1192					54	25	3	0	0	0	0.028476	1	9482	9482		33.516	8.0654	1	95827	+		43124	27281	35649	35672	46577	46577					0.023541487452575893
PLNLVRLLT	9	Unmodified	_PLNLVRLLT_					0	0	0			REV__ENST00000489172.5_1_3:101443520-101477325:+|nuORF	REV__ENST00000489172.5_1_3:101443520-101477325:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.8204345703125	2	519.837134	1037.65972	0.78685	0.00040903	1.8964	0.00098584	2.6833	0.0013949	520.3395367648075	131.96	0.63475	131.74	131.59	132.23	-0.22696					15	12	2	0	0	0	0.027462	1	13042	13042		20.947	4.4738	1	12344	+		43125	22299	35650	35673	46578	46578					0.14239185645033103
PLNMLLPLL	9	Unmodified	_PLNMLLPLL_					0	0	0		nc|ENSG00000168216|Q9NUN5-3|LMBRD1;ENSG00000168216|ENST00000649934|LMBRD1;nc|ENSG00000168216|Q9NUN5-4|LMBRD1;nc|ENSG00000168216|Q9NUN5-2|LMBRD1	nc|ENSG00000168216|Q9NUN5-3|LMBRD1	nc|ENSG00000168216|Q9NUN5-3|LMBRD1	MULTI-MSMS	OvCa9_classI_Rep2	2	512.318603515625	2	512.317189	1022.61982	-1.0601	-0.00054311	4.4092	0.0022589	3.3492	0.0017158	512.3193628969464	54.362	1.9918	51.548	51.075	53.067	-2.8139					110	39	4	0	0	0	0.42057	1	3742	3742		50.025	0	1	832500			43126	6879	35651	35674	46579	46579					0.10941922650113156
PLNQAHRV	8	Unmodified	_PLNQAHRV_					0	0	0		ENSG00000248487|ENST00000273596|ABHD14A;ENST00000474575.1_1_3:52009151-52012413:+|nuORF	ENSG00000248487|ENST00000273596|ABHD14A	ENSG00000248487|ENST00000273596|ABHD14A	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.76654052734375	2	467.764501	933.514448	0.11172	5.226E-05	-3.2687	-0.001529	-3.157	-0.0014767	467.7631207963405	143.15	0.69534	141.71	141.46	142.16	-1.4427					21	13	2	0	0	0	0.73288	1	14006	14006		35.201	0	1	29477			43127	9408	35652	35675	46580	46580					0.04503142568705698
PLNRTPQLL	9	Unmodified	_PLNRTPQLL_					0	0	0		HERV30-int_dup42|chr10:53025889-53026352:-|15.600811757304594|0.0885907607063529|7.46|417.0|14|1|anti-sense	HERV30-int_dup42|chr10:53025889-53026352:-|15.600811757304594|0.0885907607063529|7.46|417.0|14|1|anti-sense	HERV30-int_dup42|chr10:53025889-53026352:-|15.600811757304594|0.0885907607063529|7.46|417.0|14|1|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	526.3133544921875	2	526.316566	1050.61858	1.4872	0.00078273	-2.724	-0.0014337	-1.2369	-0.00065098	526.3150539679418	125.72	2.3814	125.72	125.11	127.49	0					116	54	3	0	0	0	0.5811	1	14464	14464		34.173	3.6689	1	273860			43128	14394	35653	35676	46581	46581					0.09529424605580061
PLNTPPLCTST	11	Unmodified	_PLNTPPLCTST_					0	0	0			REV__nc|ENSG00000060237|Q9H4A3-5|WNK1	REV__nc|ENSG00000060237|Q9H4A3-5|WNK1	MULTI-MSMS	OvCa9_classI_Rep2	2	572.2855224609375	2	572.289356	1142.56416	-1.4852	-0.00084994	-4.3971	-0.0025164	-5.8823	-0.0033664	572.2866735153697	32.713	1.6873	30.003	29.53	31.218	-2.7097					70	33	3	0	0	0	0.48738	1	1113	1113		54.776	7.119	1	392360	+		43129	28719	35654	35677	46582	46582					-0.0014195532817211642
PLNVKEIVIA	10	Unmodified	_PLNVKEIVIA_					0	0	0		tr|A0A7D7A2B9|A0A7D7A2B9_9CLOTTransportpermeaseproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16220PE=3SV=1	tr|A0A7D7A2B9|A0A7D7A2B9_9CLOTTransportpermeaseproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16220PE=3SV=1	tr|A0A7D7A2B9|A0A7D7A2B9_9CLOTTransportpermeaseproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16220PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.3353881835938	2	548.342249	1094.66995	-0.12468	-6.8365E-05	-2.6349	-0.0014448	-2.7596	-0.0015132	548.3405518903534	31.04	0.24313	31.04	30.881	31.124	0					6	4	2	0	0	0	0.027147	1	1234	1234		10.265	0	1	21973			43130	36071	35655	35678	46583	46583					0.12639748579613297
PLPAAPRTR	9	Unmodified	_PLPAAPRTR_					0	0	0		ENST00000395491.6_1_17:21217545-21218022:+|nuORF	ENST00000395491.6_1_17:21217545-21218022:+|nuORF	ENST00000395491.6_1_17:21217545-21218022:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.2692565917969	2	489.795801	977.577048	-0.48648	-0.00023828	0.40832	0.00019999	-0.078158	-3.8282E-05	489.79596118042343	56.099	0.49509	56.099	55.845	56.34	0					17	11	2	0	0	0	0.027462	1	4606	4606		16.473	3.514	1	254320			43131	11291	35656	35679	46584	46584					0.08736288636885092
PLPAARHGS	9	Unmodified	_PLPAARHGS_					0	0	0		ENST00000419007.5_1_3:50310971-50311493:+|nuORF;ENST00000434030.1_1_3:50310607-50311493:+|nuORF	ENST00000419007.5_1_3:50310971-50311493:+|nuORF	ENST00000419007.5_1_3:50310971-50311493:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	453.2504577636719	2	453.251226	904.487899	1.1468	0.00051981	-2.7301	-0.0012374	-1.5832	-0.00071759	453.2495980184772	157.72	0.87918	157.72	157.35	158.23	0					31	17	4	0	0	0	0.67509	1	18489	18489		23.042	3.6825	1	55411			43132	11649	35657	35680	46585	46585					0.031834536773772015
PLPDSVVIHL	10	Unmodified	_PLPDSVVIHL_					0	0	0		tr|A0A553SMK3|A0A553SMK3_NIACIS-adenosylmethioninedecarboxylaseproenzymeOS=NialliacirculansOX=1397GN=speDPE=3SV=1	tr|A0A553SMK3|A0A553SMK3_NIACIS-adenosylmethioninedecarboxylaseproenzymeOS=NialliacirculansOX=1397GN=speDPE=3SV=1	tr|A0A553SMK3|A0A553SMK3_NIACIS-adenosylmethioninedecarboxylaseproenzymeOS=NialliacirculansOX=1397GN=speDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3167724609375	2	545.318774	1088.623	-2.8527	-0.0015556	-0.96726	-0.00052747	-3.8199	-0.0020831	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.71192	1	11814	11814		29.15	2.4566	1	337600			43133	33842	35658	35681	46586	46586					0.08222889028479585
PLPELVKLKY	10	Unmodified	_PLPELVKLKY_					0	0	0		ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	ENSG00000090054|ENST00000262554|SPTLC1	MULTI-MSMS	OvCa9_classI_Rep2	2	400.58795166015625	3	400.584792	1198.73255	4.6344	0.0018565	1.507	0.00060368	6.1414	0.0024601	400.58524212682823	26.421	0.50592	23.711	23.567	24.073	-2.7097					20	12	2	0	0	0	0.81208	1	367	367		17.468	1.4612	1	24033			43134	1831	35659	35682	46587	46587					0.14112894647814755
PLPGDGPF	8	Unmodified	_PLPGDGPF_					0	0	0			REV__ENST00000432700.5_1_22:36536658-36536868:-|nuORF	REV__ENST00000432700.5_1_22:36536658-36536868:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.8794250488281	2	400.202879	798.391205	1.102	0.00044103	0.50838	0.00020346	1.6104	0.00064449	400.203122350164	54.176	0.32405	54.176	53.969	54.293	0					11	7	2	0	0	0	0.028476	1	4358	4358		28.254	0	1	96939	+		43135	25736	35660	35683	46588	46588					-0.016055336024237477
PLPGKAFIRTR	11	Unmodified	_PLPGKAFIRTR_					0	0	0		ENST00000332281.5_1_16:88744440-88744848:-|nuORF	ENST00000332281.5_1_16:88744440-88744848:-|nuORF	ENST00000332281.5_1_16:88744440-88744848:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	628.382080078125	2	628.385314	1254.75608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	151.8	1	150.37	149.87	150.87	-1.435								0	0	0	0.19474	1	15008	15008		22.58	5.1116	1				43136	10454	35661	35684	46589	46589					0.13888753204969362
PLPHIAVL	8	Unmodified	_PLPHIAVL_					0	0	0		nc|ENSG00000162591|O75095-2|MEGF6;ENSG00000162591|ENST00000356575|MEGF6	nc|ENSG00000162591|O75095-2|MEGF6	nc|ENSG00000162591|O75095-2|MEGF6	MULTI-MSMS	OvCa9_classI_Rep3	3	430.27423095703125	2	430.273638	858.532724	0.52903	0.00022763	-0.44668	-0.0001922	0.08235	3.5433E-05	430.27333471569034	108.54	1.6558	107.34	106.9	108.56	-1.1978					82	31	3	0	0	0	0.7363	1	7772	7772		33.493	0	1	490810			43137	6197	35662	35685	46590	46590					0.09779884490706081
PLPHIAVL	8	Unmodified	_PLPHIAVL_					0	0	0		nc|ENSG00000162591|O75095-2|MEGF6;ENSG00000162591|ENST00000356575|MEGF6	nc|ENSG00000162591|O75095-2|MEGF6	nc|ENSG00000162591|O75095-2|MEGF6	MULTI-MSMS	OvCa9_classI_Rep4_	4	430.2738952636719	2	430.273638	858.532724	0.20112	8.6536E-05	-0.046823	-2.0147E-05	0.1543	6.639E-05	430.27350674453226	109.1	1.7128	107.37	106.97	108.68	-1.7256					93	32	4	0	0	0	0.7363	1	10056	10056		33.493	0	1	507820			43138	6197	35662	35685	46591	46591					0.09779884490706081
PLPIKEVV	8	Unmodified	_PLPIKEVV_					0	0	0			REV__ENSG00000161996|ENST00000293879|WDR90	REV__ENSG00000161996|ENST00000293879|WDR90	MULTI-SECPEP	OvCa9_classI_Rep3	3	448.2774658203125	2	447.786579	893.558604	1.0592	0.00047429	-4.0563	-0.0018164	-2.9971	-0.0013421	447.7846524826501	67.642	0.89731	64.755	64.441	65.338	-2.8873					28	17	2	0	0	0	0.028476	1	2840	2840		21.702	2.3424	1	21188	+		43139	20716	35663	35686	46592	46592					0.1075673394233263
PLPIKEVV	8	Unmodified	_PLPIKEVV_					0	0	0			REV__ENSG00000161996|ENST00000293879|WDR90	REV__ENSG00000161996|ENST00000293879|WDR90	MULTI-MATCH	OvCa9_classI_Rep2	2		2	447.786579	893.558604	1.9785	0.00088597	-5.5398	-0.0024807	-3.5613	-0.0015947	447.78397619680175	67.23	0.69296	64.569	64.199	64.892	-2.661	-0.19131	-0.00085825	NaN	21.702	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14397	+		43140	20716	35663	35686							0.1075673394233263
PLPIKEVV	8	Unmodified	_PLPIKEVV_					0	0	0			REV__ENSG00000161996|ENST00000293879|WDR90	REV__ENSG00000161996|ENST00000293879|WDR90	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	447.786579	893.558604	0.86475	0.00038722	-5.3734	-0.0024062	-4.5087	-0.0020189	447.78426576517046	68.448	0.59243	64.958	64.72	65.312	-3.4902	0.19698	-0.00070924	NaN	21.702	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16093	+		43141	20716	35663	35686							0.1075673394233263
PLPKETWKF	9	Unmodified	_PLPKETWKF_					0	0	0		nc|ENSG00000136250|P28039-2|AOAH;ENSG00000136250|ENST00000617537|AOAH	nc|ENSG00000136250|P28039-2|AOAH	nc|ENSG00000136250|P28039-2|AOAH	MULTI-MSMS	OvCa99_classI_Rep5	1	573.3233032226562	2	573.321317	1144.62808	1.7983	0.001031	0.37943	0.00021754	2.1777	0.0012485	573.3214358318186	83.856	1.0492	83.856	83.463	84.512	0					52	24	3	0	0	0	0.28934	1	8738	8738		64.207	9.431	1	2622400			43142	4477	35664	35687	46593	46593					0.061551928911057985
PLPLAPLARS	10	Unmodified	_PLPLAPLARS_					0	0	0		ENST00000607726.1_1_1:214161346-214161979:+|nuORF	ENST00000607726.1_1_1:214161346-214161979:+|nuORF	ENST00000607726.1_1_1:214161346-214161979:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	517.8187255859375	2	517.821484	1033.62842	-3.1809	-0.0016471	-0.94149	-0.00048752	-4.1224	-0.0021347	517.8208401920543	146.89	1.3501	145.93	145.54	146.89	-0.95947					60	26	3	0	0	0	0.79213	1	12354	12354		19.997	0	1	132640			43143	14287	35665	35688	46594	46594					0.1129461261095912
PLPLGKVADPL	11	Unmodified	_PLPLGKVADPL_					0	0	0			REV__ENSG00000177981|ENST00000317697|ASB8	REV__ENSG00000177981|ENST00000317697|ASB8	MULTI-MSMS	OvCa9_classI_Rep2	2	560.3410034179688	2	560.342249	1118.66995	-4.5115	-0.002528	1.2493	0.00070003	-3.2622	-0.001828	560.3427660344651	160.69	1.3876	160.47	160.23	161.62	-0.22697					59	27	4	0	0	0	0.70865	1	16372	16372		26.693	6.6961	1	170910	+		43144	22036	35666	35689	46595	46595					0.11535748579603933
PLPLLIDL	8	Unmodified	_PLPLLIDL_					0	0	0			REV__tr|A0A7D6W178|A0A7D6W178_9CLOTIsopropylmalatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02710PE=4SV=1	REV__tr|A0A7D6W178|A0A7D6W178_9CLOTIsopropylmalatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02710PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	447.223388671875	2	447.288954	892.563355	-0.13832	-6.1868E-05	-2.8251	-0.0012637	-2.9634	-0.0013255	447.2876320910926	37.368	0.32553	37.368	37.205	37.531	0					10	6	2	0	0	0	0.028476	1	2026	2026		19.36	0	1	75446	+		43145	31879	35667	35690	46596	46596					0.1127761808509149
PLPLRRLV	8	Unmodified	_PLPLRRLV_					0	0	0			REV__ENST00000274811.8_1_5:175959512-175964241:-|nuORF	REV__ENST00000274811.8_1_5:175959512-175964241:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	482.2860107421875	2	482.326737	962.63892	0.30435	0.0001468	-0.45637	-0.00022012	-0.15201	-7.332E-05	482.32646549003573	89.515	0.64057	86.94	86.608	87.248	-2.575					16	12	2	0	0	0	0.028476	1	7717	7717		25.45	0	1	15985	+		43146	24090	35668	35691	46597	46597					0.15610640056036118
PLPLRSLVD	9	Unmodified	_PLPLRSLVD_					0	0	0		ENST00000272638.13_1_2:136519405-136527343:+|nuORF	ENST00000272638.13_1_2:136519405-136527343:+|nuORF	ENST00000272638.13_1_2:136519405-136527343:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.2589111328125	2	505.305667	1008.59678	-0.059589	-3.0111E-05	-0.90535	-0.00045748	-0.96494	-0.00048759	505.3051997932593	80.246	1.8503	78.551	78.074	79.925	-1.6951					94	36	4	0	0	0	0.027433	1	6736	6736		51.335	8.9393	1	447960			43147	9999	35669	35692	46598	46598					0.09282619856981
PLPPADCVL	9	Unmodified	_PLPPADCVL_					0	0	0		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.76220703125	2	462.746596	923.478639	-1.2306	-0.00056948	-1.3811	-0.00063909	-2.6117	-0.0012086	462.7447593943462	80.871	0.19678	78.16	78.052	78.249	-2.7106					6	3	2	0	0	0	0.027462	1	6629	6629		42.474	0	1	9578.3			43148	6706	35670	35693	46599	46599					0.013839242768312943
PLPPPLVK	8	Unmodified	_PLPPPLVK_					0	0	0			REV__ENSG00000136859|ENST00000373425|ANGPTL2	REV__ENSG00000136859|ENST00000373425|ANGPTL2	MULTI-MSMS	OvCa99_classI_Rep5	1	430.784912109375	2	430.783839	859.553125	2.6232	0.00113	0.03069	1.3221E-05	2.6539	0.0011433	430.7837208892506	96.482	1.269	96.482	96.253	97.522	0					79	29	4	0	0	0	0.59103	1	10621	10621		65.897	2.919	1	4396000	+		43149	19413	35671	35694	46600	46600					0.11773055150513301
PLPPPQPDLD	10	Unmodified	_PLPPPQPDLD_					0	0	0			REV__ENSG00000008300|ENST00000164024|CELSR3	REV__ENSG00000008300|ENST00000164024|CELSR3	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7945556640625	2	544.784764	1087.55498	1.4227	0.00077505	1.6037	0.00087366	3.0264	0.0016487	544.7853480357684	90.732	0.32229	90.732	90.577	90.899	0					13	7	2	0	0	0	0.026915	1	9720	9720		35.618	7.736	1	694020	+		43150	16451	35672	35695	46601	46601					0.014700193778026005
PLPPPVKL	8	Unmodified	_PLPPPVKL_					0	0	0			REV__nc|ENSG00000130479|Q66K74-2|MAP1S	REV__nc|ENSG00000130479|Q66K74-2|MAP1S	MULTI-MSMS	OvCa99_classI_Rep5	1	430.7851257324219	2	430.783839	859.553125	2.6232	0.00113	0.03069	1.3221E-05	2.6539	0.0011433	430.7837208892506	96.482	1.269	96.482	96.253	97.522	0					79	29	4	0	0	0	0.64377	1	10560	10560		54.765	0	1	4396000	+		43151	18948	35673	35696	46602	46602					0.11773055150513301
PLPPSSFLLRR	11	Unmodified	_PLPPSSFLLRR_					0	0	0			REV__ENST00000556553.5_1_14:88851807-88857770:+|nuORF	REV__ENST00000556553.5_1_14:88851807-88857770:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8818359375	2	641.885147	1281.75574	-4.0037	-0.0025699	-0.45506	-0.00029209	-4.4587	-0.002862	642.3862707583961	149.94	3.9275	149.71	147.52	151.45	-0.22696					225	78	5	0	0	0	0.72473	1	15261	15261		19.104	1.7386	1	222110	+		43152	27563	35674	35697	46603	46603					0.12613333485114708
PLPQIKTLK	9	Unmodified	_PLPQIKTLK_					0	0	0		tr|A0A553SST0|A0A553SST0_NIACIDUF2075domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03665PE=4SV=1	tr|A0A553SST0|A0A553SST0_NIACIDUF2075domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03665PE=4SV=1	tr|A0A553SST0|A0A553SST0_NIACIDUF2075domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03665PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.8068237304688	2	519.33951	1036.66447	-0.89206	-0.00046328	-1.9227	-0.00099855	-2.8148	-0.0014618	519.3383850961761	40.221	1.0908	37.267	37.062	38.153	-2.9541					31	20	2	0	0	0	0.027448	1	1774	1774		44.117	0	1	57398			43153	34413	35675	35698	46604	46604					0.14760069787803332
PLPRLARGL	9	Unmodified	_PLPRLARGL_					0	0	0			REV__ENST00000504033.5_1_19:54040827-54040965:+|nuORF	REV__ENST00000504033.5_1_19:54040827-54040965:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	496.8216247558594	2	496.821818	991.629084	0.21016	0.00010441	-0.44989	-0.00022352	-0.23973	-0.0001191	496.82152545075974	71.168	1.942	68.465	68.025	69.967	-2.7032					97	38	4	0	0	0	0.57242	1	3314	3314		35.201	1.6851	1	703360	+		43154	26854	35676	35699	46605	46605					0.13293452050652377
PLPRSLVRVM	10	Unmodified	_PLPRSLVRVM_					0	0	0		nc|ENSG00000155229|Q96T76-8|MMS19	nc|ENSG00000155229|Q96T76-8|MMS19	nc|ENSG00000155229|Q96T76-8|MMS19	MULTI-MSMS	OvCa9_classI_Rep2	2	584.35693359375	2	584.355168	1166.69578	-2.3121	-0.0013511	4.4342	0.0025912	2.1222	0.0012401	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.75313	1	14783	14783		24.519	5.4157	1	180810			43155	15110	35677	35700	46606	46606					0.1191031955024755
PLPRSLVRVMA	11	Unmodified	_PLPRSLVRVMA_					0	0	0		nc|ENSG00000155229|Q96T76-8|MMS19	nc|ENSG00000155229|Q96T76-8|MMS19	nc|ENSG00000155229|Q96T76-8|MMS19	MULTI-MSMS	OvCa9_classI_Rep2	2	619.868896484375	2	619.873725	1237.7329	-3.8587	-0.0023919	-3.029	-0.0018776	-6.8877	-0.0042695	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.71789	2	15324	15324;15369		23.523	1.7386	1	492670			43156	15110	35678	35701	46607;46608	46607					0.12353991096006212
PLPRSLVRVMA	11	Unmodified	_PLPRSLVRVMA_					0	0	0		nc|ENSG00000155229|Q96T76-8|MMS19	nc|ENSG00000155229|Q96T76-8|MMS19	nc|ENSG00000155229|Q96T76-8|MMS19	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8684692382812	2	619.873725	1237.7329	-3.1194	-0.0019336	-3.9204	-0.0024301	-7.0397	-0.0043637	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.69081	1	14952	14952		32.812	1.2826	1	806750			43157	15110	35678	35701	46609	46609					0.12353991096006212
PLPTPSLRKL	10	Unmodified	_PLPTPSLRKL_					0	0	0		ENST00000345317.6_1_7:26894494-26904350:-|nuORF	ENST00000345317.6_1_7:26894494-26904350:-|nuORF	ENST00000345317.6_1_7:26894494-26904350:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.8287963867188	2	561.355691	1120.69683	-0.19598	-0.00011002	-0.85932	-0.00048238	-1.0553	-0.0005924	561.3563706145711	70.307	0.19897	70.307	70.17	70.369	0					6	4	2	0	0	0	0.027118	1	6715	6715		25.574	9.9322	1	149440			43158	10622	35679	35702	46610	46610					0.1413085719082119
PLPTVRRLL	9	Unmodified	_PLPTVRRLL_					0	0	0		ENST00000505559.5_1_17:48627490-48628082:+|nuORF	ENST00000505559.5_1_17:48627490-48628082:+|nuORF	ENST00000505559.5_1_17:48627490-48628082:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	532.8081665039062	2	532.850576	1063.6866	-1.6437	-0.00087584	0.1484	7.9078E-05	-1.4953	-0.00079677	532.8510454991102	76.442	0.36876	74.588	74.308	74.676	-1.854					9	6	2	0	0	0	0.027462	1	6297	6297		30.504	0	1	15833			43159	12897	35680	35703	46611	46611					0.15730294256240995
PLPVIALPGVD	11	Unmodified	_PLPVIALPGVD_					0	0	0		CHSY3-NINJ2|1|fusion;CHSY3|p.V836Nfs*12|1|0.05|ENSG00000198108|chr5:130185647-130185648|-/AACGGGGGAAATCCTCCCACTGATG|frameshift_variant;ENSG00000198108|ENST00000305031|CHSY3	CHSY3-NINJ2|1|fusion	CHSY3-NINJ2|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.2861938476562	2	545.828975	1089.6434	1.8784	0.0010253	1.5201	0.0008297	3.3985	0.001855	545.8294371729683	134.13	0.33228	134.13	133.96	134.29	0					11	6	2	0	0	0	0.025611	1	15624	15624		14.865	0	1	48536			43160	577	35681	35704	46612	46612					0.10216059688286805
PLPVQVFNL	9	Unmodified	_PLPVQVFNL_					0	0	0		ENSG00000169727|ENST00000578552|GPS1;nc|ENSG00000169727|Q13098|GPS1;nc|ENSG00000169727|Q13098-6|GPS1;ENST00000320548.8_2_17:80009774-80010253:+|nuORF;ENST00000578642.1_1_17:80009774-80011284:+|nuORF	ENSG00000169727|ENST00000578552|GPS1	ENSG00000169727|ENST00000578552|GPS1	MULTI-MSMS	OvCa99_classI_Rep5	1	513.8037109375	2	513.80276	1025.59097	0.70534	0.00036241	0.75162	0.00038618	1.457	0.00074859	513.8029994184446	151.51	1.5289	151.51	151.15	152.67	0					67	34	4	0	0	0	0.22961	1	17737	17737		71.296	8.3173	1	547420			43161	7035	35682	35705	46613	46613					0.0791952134532039
PLQAPVARVE	10	Unmodified	_PLQAPVARVE_					0	0	0			REV__ENST00000606645.1_1_1:2477953-2478280:+|nuORF	REV__ENST00000606645.1_1_1:2477953-2478280:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	540.31494140625	2	540.314023	1078.61349	-0.0032497	-1.7559E-06	-0.40502	-0.00021884	-0.40827	-0.00022059	540.3136598498987	87.836	1.514	85.659	85.19	86.704	-2.1768					78	29	5	0	0	0	0.53807	1	5317	5317		49.536	0.094497	1	618000	+		43162	28080	35683	35706	46614	46614					0.0773312074295518
PLQCVLWGCL	10	Unmodified	_PLQCVLWGCL_					0	0	0		ENST00000489304.5_1_20:44746991-44755859:+|nuORF;nc|ENSG00000101017|P25942-2|CD40;ENSG00000101017|ENST00000372285|CD40	ENST00000489304.5_1_20:44746991-44755859:+|nuORF	ENST00000489304.5_1_20:44746991-44755859:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.3248901367188	2	566.288105	1130.56166	-0.16282	-9.2202E-05	1.9123	0.0010829	1.7495	0.00099073	566.7913880604765	55.775	0.61141	55.775	55.44	56.052	0					18	14	2	0	0	0	0.026982	1	4550	4550		38.806	13.356	1	177580			43163	2134	35684	35707	46615	46615					0.001599177331854662
PLQELWSTGQL	11	Unmodified	_PLQELWSTGQL_					0	0	0			REV__nc|ENSG00000185585|Q68BL7-3|OLFML2A	REV__nc|ENSG00000185585|Q68BL7-3|OLFML2A	MULTI-MSMS	OvCa9_classI_Rep4_	4	636.3359375	2	636.335153	1270.65575	3.3798	0.0021507	-3.2948	-0.0020966	0.084991	5.4082E-05	636.3329833424973	134.48	0.99045	132.96	132.64	133.63	-1.5257					39	19	3	0	0	0	0.67712	1	13004	13004		37.508	1.0614	1	96831	+		43164	22513	35685	35708	46616	46616					0.031250513606664754
PLQGVWQSLL	10	Unmodified	_PLQGVWQSLL_					0	0	0		ENST00000541110.5_2_6:42196308-42200505:-|nuORF	ENST00000541110.5_2_6:42196308-42200505:-|nuORF	ENST00000541110.5_2_6:42196308-42200505:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	570.8226318359375	2	570.824224	1139.63389	-0.72263	-0.0004125	-3.4753	-0.0019838	-4.1979	-0.0023963	570.8221840841696	81.573	1.8468	78.862	78.494	80.341	-2.7106					65	37	2	0	0	0	0.28845	1	6722	6722		82.241	2.5279	1	1292800			43165	13461	35686	35709	46617	46617					0.06966291402773095
PLQIDHLVF	9	Unmodified	_PLQIDHLVF_					0	0	0		DDHD2|p.W598Sfs*31|1|0.03|ENSG00000085788|chr8:38253028-38253029|-/CTCGGCTCACTGCAACCTCCACCTTCCA|frameshift_variant;DDHD2|p.W598Gfs*57|1|0.03|ENSG00000085788|chr8:38253027-38253028|-/GG|frameshift_variant;ENSG00000085788|ENST00000397166|DDHD2	DDHD2|p.W598Sfs*31|1|0.03|ENSG00000085788|chr8:38253028-38253029|-/CTCGGCTCACTGCAACCTCCACCTTCCA|frameshift_variant	DDHD2|p.W598Sfs*31|1|0.03|ENSG00000085788|chr8:38253028-38253029|-/CTCGGCTCACTGCAACCTCCACCTTCCA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.2745971679688	2	541.305667	1080.59678	-0.22178	-0.00012005	3.6737	0.0019886	3.4519	0.0018686	541.307335893889	40.934	0.57674	40.934	40.754	41.33	0					17	12	2	0	0	0	0.027462	1	2497	2497		25.45	2.4077	1	60794			43166	716	35687	35710	46618	46618					0.059706198569983826
PLQIENII	8	Unmodified	_PLQIENII_					0	0	0		ENST00000510321.1_1_4:146044244-146044510:+|nuORF;ENST00000515678.5_1_4:146042303-146044753:+|nuORF;ENST00000444025.1_1_7:23602199-23602811:-|nuORF;ENSG00000164163|ENST00000296577|ABCE1	ENST00000510321.1_1_4:146044244-146044510:+|nuORF	ENST00000510321.1_1_4:146044244-146044510:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.832763671875	2	470.279118	938.543683	2.4694	0.0011613	-0.33441	-0.00015727	2.135	0.0010041	470.278943291828	98.737	0.89889	98.737	98.419	99.318	0					45	21	4	0	0	0	0.028476	1	10926	10926		44.117	0	1	1159800			43167	6421	35688	35711	46619	46619					0.07195242074340058
PLQILMELL	9	Unmodified	_PLQILMELL_					0	0	0			REV__nc|ENSG00000124155|Q969N2-3|PIGT	REV__nc|ENSG00000124155|Q969N2-3|PIGT	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.7666015625	2	535.319928	1068.6253	-0.45958	-0.00024602	2.9224	0.0015644	2.4628	0.0013184	535.8235741676667	49.225	0.29791	49.225	49.075	49.373	0					11	6	3	0	0	0	0.027462	1	3676	3676		29.15	4.9468	1	454340	+		43168	18667	35689	35712	46620	46620					0.09373601441939172
PLQILMELL	9	Unmodified	_PLQILMELL_					0	0	0			REV__nc|ENSG00000124155|Q969N2-3|PIGT	REV__nc|ENSG00000124155|Q969N2-3|PIGT	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	535.319928	1068.6253	-1.2806	-0.00068551	4.967	0.0026589	3.6864	0.0019734	535.3223841568954	52.31	0.70962	49.102	48.893	49.602	-3.208	-0.061428	0.0002045	NaN	42.396	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73544	+		43169	18667	35689	35712							0.09373601441939172
PLQLPPPVN	9	Unmodified	_PLQLPPPVN_					0	0	0		ENST00000578759.1_1_17:60214444-60217453:-|nuORF	ENST00000578759.1_1_17:60214444-60217453:-|nuORF	ENST00000578759.1_1_17:60214444-60217453:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.7903747558594	2	487.78711	973.559667	3.5562	0.0017347	2.7211	0.0013273	6.2773	0.003062	487.7882512057077	132.82	4.8462	131.32	130.38	135.22	-1.5015					236	97	4	0	0	0	0.59983	1	12872	12872		31.955	2.8053	1	143240			43170	13973	35690	35713	46621	46621					0.0718294831123103
PLQMKHARA	9	Unmodified	_PLQMKHARA_					0	0	0			REV__ENSG00000179041|ENST00000320270|RRS1	REV__ENSG00000179041|ENST00000320270|RRS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.778564453125	2	526.295111	1050.57567	1.4302	0.00075271	2.6466	0.0013929	4.0768	0.0021456	526.2963226969098	118.6	1.2231	118.6	118.11	119.33	0					33	25	2	0	0	0	0.027441	1	13605	13605		55.504	7.8469	1	84515	+		43171	22094	35691	35714	46622	46622					0.05240331276490906
PLQNINSVQL	10	Unmodified	_PLQNINSVQL_					0	0	0		ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-2|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.W1001Afs*3|1|0.12|ENSG00000175216|chr11:46770973-46770974|AG/-|frameshift_variant	ENSG00000175216|ENST00000529230|CKAP5	ENSG00000175216|ENST00000529230|CKAP5	MULTI-MSMS	OvCa99_classI_Rep5	1	563.320556640625	2	563.316763	1124.61897	1.2142	0.000684	4.4214	0.0024907	5.6356	0.0031746	563.3191568945346	158.92	3.1151	158.92	156.55	159.66	0					133	63	5	0	0	0	0.55109	1	18603	18603		47.96	7.1814	1	3146600			43172	7525	35692	35715	46623	46623					0.06164799534758458
PLQRHRKQTQ	10	Unmodified	_PLQRHRKQTQ_					0	0	0		ENST00000427574.6_1_11:76155969-76156146:+|nuORF	ENST00000427574.6_1_11:76155969-76156146:+|nuORF	ENST00000427574.6_1_11:76155969-76156146:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	431.2343444824219	3	431.249577	1290.7269	-1.1161	-0.0004813	0.68133	0.00029382	-0.43473	-0.00018748	431.2497736756736	39.436	0.79156	36.727	36.36	37.152	-2.7097					20	15	2	0	0	0	0.027187	1	1972	1972		19.263	2.5453	1	8946.7			43173	11758	35693	35716	46624	46624					0.09316608908670787
PLQRHRKQTQ	10	Unmodified	_PLQRHRKQTQ_					0	0	0		ENST00000427574.6_1_11:76155969-76156146:+|nuORF	ENST00000427574.6_1_11:76155969-76156146:+|nuORF	ENST00000427574.6_1_11:76155969-76156146:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	431.249577	1290.7269	0.79103	0.00034113	-0.2461	-0.00010613	0.54494	0.000235	431.24959800103915	39.315	0.69513	36.389	36.146	36.841	-2.9264	-0.16886	-0.0008801	NaN	29.551	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18328			43174	11758	35693	35716							0.09316608908670787
PLQRLARGH	9	Unmodified	_PLQRLARGH_					0	0	0		ENST00000464438.1_1_20:62152139-62152717:+|nuORF;ENST00000370177.1_1_20:62152208-62152943:+|nuORF;ENST00000370179.7_1_20:62152139-62153033:+|nuORF	ENST00000464438.1_1_20:62152139-62152717:+|nuORF	ENST00000464438.1_1_20:62152139-62152717:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.7664184570312	2	524.312149	1046.60975	1.7842	0.00093546	-1.0376	-0.00054401	0.74659	0.00039145	524.811976989178	130.15	0.69315	128.67	128.41	129.11	-1.4779					17	13	2	0	0	0	0.027462	1	12450	12450		30.504	11.144	1	54813			43175	10921	35694	35717	46625	46625					0.08830495759730184
PLQRRFSVT	9	Unmodified	_PLQRRFSVT_					0	0	0		nc|ENSG00000103932|Q9BWH6-2|RPAP1;ENSG00000103932|ENST00000304330|RPAP1;ENST00000565167.1_1_15:41810158-41813973:-|nuORF;nc|ENSG00000103932|Q9BWH6-3|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	nc|ENSG00000103932|Q9BWH6-2|RPAP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.3101196289062	2	552.31964	1102.62473	-0.42906	-0.00023698	-0.861	-0.00047555	-1.2901	-0.00071253	552.3188886645435	63.45	0.76813	59.975	59.674	60.442	-3.475					35	15	4	0	0	0	0.027462	1	4502	4502		27.882	0	1	87551			43176	2344	35695	35718	46626	46626					0.07751942837080605
PLQSKQLRDD	10	Unmodified	_PLQSKQLRDD_					0	0	0		L1M2_dup9102|chr21:15781465-15783675:+|1.9878716944661228|0.1805436335784144|3.46|428.0|4|1|sense	L1M2_dup9102|chr21:15781465-15783675:+|1.9878716944661228|0.1805436335784144|3.46|428.0|4|1|sense	L1M2_dup9102|chr21:15781465-15783675:+|1.9878716944661228|0.1805436335784144|3.46|428.0|4|1|sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	600.2988891601562	2	600.322576	1198.6306	2.2427	0.0013464	-4.1854	-0.0025126	-1.9426	-0.0011662	600.3199079978425	71.659	0.34788	69.057	68.932	69.28	-2.6023					9	6	2	0	0	0	0.026867	1	3368	3368		28.081	3.8787	1	9467.5			43177	14550	35696	35719	46627	46627					0.039229965580943826
PLRAALLL	8	Unmodified	_PLRAALLL_					0	0	0			REV__ENST00000474157.1_1_7:23286476-23286758:+|nuORF	REV__ENST00000474157.1_1_7:23286476-23286758:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	433.7944030761719	2	433.794738	865.574923	1.1641	0.000505	-1.5519	-0.00067321	-0.38776	-0.00016821	433.79394637933103	113.56	1.8167	112.11	111.75	113.57	-1.4461					87	35	4	0	0	0	0.7043	1	10571	10571		42.474	0	1	638440	+		43178	26340	35697	35720	46628	46628					0.13675859899092302
PLRAARQRG	9	Unmodified	_PLRAARQRG_					0	0	0			REV__ENST00000605085.1_1_1:154934378-154934528:+|nuORF	REV__ENST00000605085.1_1_1:154934378-154934528:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	512.27880859375	2	512.809774	1023.60499	1.3706	0.00070288	1.1852	0.0006078	2.5559	0.0013107	512.8102727767563	113.12	1.2145	112.05	111.71	112.92	-1.0753					55	23	3	0	0	0	0.027462	1	8269	8269		17.365	0	1	137910	+		43179	28063	35698	35721	46629	46629					0.09413611616992057
PLRALPPGRFA	11	Unmodified	_PLRALPPGRFA_					0	0	0			REV__ENSG00000105722|ENST00000222329|ERF	REV__ENSG00000105722|ENST00000222329|ERF	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8558349609375	2	597.858932	1193.70331	-0.38237	-0.0002286	-3.9169	-0.0023418	-4.2993	-0.0025704	597.8564103488146	145.14	4.0194	143.71	141.51	145.53	-1.4357					229	77	4	0	0	0	0.69081	1	14369	14369		32.812	10.233	1	217250	+		43180	17755	35699	35722	46630	46630					0.11420795142180395
PLRALSIII	9	Unmodified	_PLRALSIII_					0	0	0			REV__ENSG00000197386|ENST00000355072|HTT	REV__ENSG00000197386|ENST00000355072|HTT	MULTI-MSMS	OvCa9_classI_Rep3	3	498.33319091796875	2	498.334227	994.653902	-1.4326	-0.00071391	1.262	0.00062888	-0.17064	-8.5035E-05	498.3347342059933	136.81	1.8563	135.72	135.27	137.12	-1.0858					84	37	3	0	0	0	0.35444	2	11098	11098;11110		56.721	7.1458	1	104120	+		43181	22916	35700	35723	46631;46632	46631					0.15636087133384535
PLRAPLLL	8	Unmodified	_PLRAPLLL_					0	0	0		CST3|p.F122Pfs*22|1|0.04|ENSG00000101439|chr20:23633994-23633995|-/CCCGCCGGCTGCGGAGGGGA|frameshift_variant;ENSG00000101439|ENST00000376925|CST3	CST3|p.F122Pfs*22|1|0.04|ENSG00000101439|chr20:23633994-23633995|-/CCCGCCGGCTGCGGAGGGGA|frameshift_variant	CST3|p.F122Pfs*22|1|0.04|ENSG00000101439|chr20:23633994-23633995|-/CCCGCCGGCTGCGGAGGGGA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	446.8029479980469	2	446.802563	891.590573	0.97127	0.00043396	-0.80234	-0.00035849	0.16893	7.5478E-05	446.80206538666704	119.76	1.1814	118.73	118.33	119.51	-1.0271					55	23	3	0	0	0	0.64377	1	9096	9096		54.765	7.9982	1	215100			43182	689	35701	35724	46633	46633					0.14044146416131298
PLRDVPSH	8	Unmodified	_PLRDVPSH_					0	0	0		ENST00000465065.5_1_3:180321958-180322102:+|nuORF;nc|ENSG00000163728|Q96N46-3|TTC14;nc|ENSG00000163728|Q96N46-2|TTC14;ENSG00000163728|ENST00000296015|TTC14	ENST00000465065.5_1_3:180321958-180322102:+|nuORF	ENST00000465065.5_1_3:180321958-180322102:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	461.7449645996094	2	460.751059	919.487565	-0.80992	-0.00037317	-0.25739	-0.00011859	-1.0673	-0.00049177	460.7509736712127	116.8	0.69335	115.76	115.54	116.23	-1.0414					19	13	2	0	0	0	0.028476	1	8738	8738		42.396	9.5837	1	39022			43183	6354	35702	35725	46634	46634					0.0246003395752723
PLREYLKWREE	11	Unmodified	_PLREYLKWREE_					0	0	0		ENST00000367104.7_1_6:158531980-158532121:-|nuORF	ENST00000367104.7_1_6:158531980-158532121:-|nuORF	ENST00000367104.7_1_6:158531980-158532121:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.3013000488281	3	506.940297	1517.79906	-1.2096	-0.00061317	-3.2964	-0.0016711	-4.506	-0.0022843	506.9388886763687	41.43	1.4977	38.45	37.814	39.312	-2.9804					56	28	3	0	0	0	0.026448	1	1882	1882		9.2118	0	1	38271			43184	10833	35703	35726	46635	46635					0.06087478471704344
PLRFNKFHSF	10	Unmodified	_PLRFNKFHSF_					0	0	0			REV__nc|ENSG00000144852|O75469-3|NR1I2	REV__nc|ENSG00000144852|O75469-3|NR1I2	MULTI-MSMS	OvCa9_classI_Rep4_	4	431.5677490234375	3	431.568135	1291.68258	0.3459	0.00014928	-4.2512	-0.0018347	-3.9053	-0.0016854	431.56630698545086	73.926	2.5457	70.695	70.337	72.883	-3.2308					166	52	5	0	0	0	0.72142	1	5794	5794		28.081	2.9555	1	1734100	+		43185	28909	35704	35727	46636	46636					0.0484020476249043
PLRIIPGLPL	10	Unmodified	_PLRIIPGLPL_					0	0	0		ENST00000368653.7_1_10:129923864-129924401:-|nuORF	ENST00000368653.7_1_10:129923864-129924401:-|nuORF	ENST00000368653.7_1_10:129923864-129924401:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	544.8630981445312	2	544.863152	1087.71175	-1.2614	-0.00068732	1.0938	0.00059598	-0.16763	-9.1336E-05	544.8636084956992	139.58	0.98232	139.36	139.11	140.09	-0.22696					40	19	3	0	0	0	0.58282	2	13943	13943;13962		44.117	14.967	1	70566			43186	10879	35705	35728	46637;46638	46637					0.17140349058786342
PLRKIVFSY	9	Unmodified	_PLRKIVFSY_					0	0	0			REV__ENSG00000169684|ENST00000299565|CHRNA5	REV__ENSG00000169684|ENST00000299565|CHRNA5	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.3521728515625	2	561.837134	1121.65972	1.1268	0.00063305	0.45359	0.00025485	1.5803	0.0008879	561.8371643337231	81.245	0.62218	81.245	80.871	81.493	0					30	14	3	0	0	0	0.027449	1	8378	8378		40.573	0	1	532630	+		43187	21476	35706	35729	46639	46639					0.10375185645057172
PLRLLAALL	9	Unmodified	_PLRLLAALL_					0	0	0		ENST00000366592.7_2_1:236306173-236341839:+|nuORF	ENST00000366592.7_2_1:236306173-236341839:+|nuORF	ENST00000366592.7_2_1:236306173-236341839:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	490.3369445800781	2	490.33677	978.658987	0.31976	0.00015679	-1.1553	-0.00056648	-0.83553	-0.00040969	490.3362879264998	135.18	3.9777	134.96	134.64	138.62	-0.22697					225	81	5	0	0	0	0.59983	1	13644	13644		31.955	0	1	7114000			43188	10822	35707	35730	46640	46640					0.16880390995981998
PLRLLRLAQE	10	Unmodified	_PLRLLRLAQE_					0	0	0			REV__POLL|p.R93Q|1|0.07|ENSG00000166169|chr10:101585994-101585994|C/T|missense_variant	REV__POLL|p.R93Q|1|0.07|ENSG00000166169|chr10:101585994-101585994|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	403.5870056152344	3	403.587307	1207.74009	2.5756	0.0010395	-2.3998	-0.00096853	0.1758	7.0949E-05	403.5861980627301	62.538	1.4885	59.504	59.214	60.703	-3.0339					41	29	3	0	0	0	0.8236	1	2292	2292		16.007	0	1	42810	+		43189	29309	35708	35731	46641	46641					0.14453046968060335
PLRLNRLLG	9	Unmodified	_PLRLNRLLG_					0	0	0			REV__nc|ENSG00000129422|Q9ULD2-3|MTUS1	REV__nc|ENSG00000129422|Q9ULD2-3|MTUS1	MULTI-MSMS	OvCa9_classI_Rep2	2	526.3402709960938	2	526.340375	1050.6662	-0.81474	-0.00042883	-0.34465	-0.0001814	-1.1594	-0.00061023	526.3400987047603	85.909	2.9151	84.418	84.047	86.963	-1.4906					140	57	5	0	0	0	0.52083	1	7457	7457		40.573	10.069	1	922440	+		43190	28844	35709	35732	46642	46642					0.14289123596404352
PLRLNRLLG	9	Unmodified	_PLRLNRLLG_					0	0	0			REV__nc|ENSG00000129422|Q9ULD2-3|MTUS1	REV__nc|ENSG00000129422|Q9ULD2-3|MTUS1	MULTI-MSMS	OvCa9_classI_Rep3	3	526.3411865234375	2	526.340375	1050.6662	-1.4823	-0.0007802	0.81918	0.00043117	-0.66314	-0.00034904	526.340747965252	87.086	2.9631	84.91	84.431	87.394	-2.1768					160	58	4	0	0	0	0.36502	1	5215	5215		55.504	16.698	1	1191300	+		43191	28844	35709	35732	46643	46643					0.14289123596404352
PLRLNRLLG	9	Unmodified	_PLRLNRLLG_					0	0	0			REV__nc|ENSG00000129422|Q9ULD2-3|MTUS1	REV__nc|ENSG00000129422|Q9ULD2-3|MTUS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.341796875	2	526.340375	1050.6662	-2.1284	-0.0011203	0.71634	0.00037704	-1.4121	-0.00074324	526.3406344905085	87.536	2.6472	84.909	84.549	87.196	-2.6269					140	52	5	0	0	0	0.36502	1	7442	7442		55.504	2.1528	1	1013500	+		43192	28844	35709	35732	46644	46644					0.14289123596404352
PLRMLPPSLL	10	Unmodified	_PLRMLPPSLL_					0	0	0			REV__ENST00000397463.2_1_2:133427495-133427582:-|nuORF	REV__ENST00000397463.2_1_2:133427495-133427582:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	568.8464965820312	2	568.846645	1135.67874	1.1361	0.00064626	-1.1496	-0.00065395	-0.013528	-7.6955E-06	568.845786397459	122.98	2.0826	121.95	121	123.08	-1.034					125	39	4	0	0	0	0.6349	1	9484	9484		37.812	0.65241	1	474050	+		43193	25355	35710	35733	46645	46645					0.11632398944448141
PLRQELVRR	9	Unmodified	_PLRQELVRR_					0	0	0			REV__ENST00000517635.2_1_7:27162062-27162197:+|nuORF	REV__ENST00000517635.2_1_7:27162062-27162197:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	583.8583984375	2	583.859464	1165.70437	-5.3703	-0.0031355	4.2795	0.0024986	-1.0909	-0.00063691	583.8618452827162	155.36	1.2983	153.87	153.54	154.84	-1.4911					100	37	4	0	0	0	0.7044	1	15422	15422		16.473	0.83134	1	230740	+		43194	27015	35711	35734	46646	46646					0.1281500951106409
PLRRGIHH	8	Unmodified	_PLRRGIHH_					0	0	0			REV__KDM2B|p.T484Hfs*28|1|0.13|ENSG00000089094|chr12:121509765-121509766|-/A|frameshift_variant	REV__KDM2B|p.T484Hfs*28|1|0.13|ENSG00000089094|chr12:121509765-121509766|-/A|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.8109436035156	2	493.293759	984.572966	0.13566	6.6918E-05	-1.8503	-0.00091276	-1.7147	-0.00084584	493.29272049728496	22.527	0.96844	21.133	20.671	21.639	-1.3935					36	23	2	0	0	0	0.028476	1	319	319		23.037	1.3344	1	18585	+		43195	28329	35712	35735	46647	46647					0.08006243933834867
PLRSGLTF	8	Unmodified	_PLRSGLTF_					0	0	0			REV__ENST00000520859.5_1_8:91013720-91017684:+|nuORF	REV__ENST00000520859.5_1_8:91013720-91017684:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	445.7601318359375	2	445.758352	889.502152	2.4726	0.0011022	3.8273	0.0017061	6.2999	0.0028082	445.7599169979036	125.28	1.1539	125.28	124.93	126.09	0					57	27	3	0	0	0	0.42208	1	14451	14451		85.359	4.3625	1	1170000	+		43196	17658	35713	35736	46648	46648					0.05298106105658462
PLRSHLQVA	9	Unmodified	_PLRSHLQVA_					0	0	0			REV__LPAR2|p.N287Tfs*60|1|0.04|ENSG00000064547|chr19:19624454-19624454|G/-|frameshift_variant	REV__LPAR2|p.N287Tfs*60|1|0.04|ENSG00000064547|chr19:19624454-19624454|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.8055114746094	2	510.801083	1019.58761	-0.41906	-0.00021405	0.32454	0.00016578	-0.094516	-4.8279E-05	510.8010994004582	77.473	1.3531	74.657	74.342	75.696	-2.8165					69	27	4	0	0	0	0.59259	1	6221	6221		32.812	0.85756	1	568210	+		43197	16772	35714	35737	46649	46649					0.07860271291315257
PLRSILALL	9	Unmodified	_PLRSILALL_					0	0	0			REV__ENST00000592982.2_1_19:33793839-33794019:+|nuORF	REV__ENST00000592982.2_1_19:33793839-33794019:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3345642089844	2	498.334227	994.653902	-1.4326	-0.00071391	1.262	0.00062888	-0.17064	-8.5035E-05	498.3347342059933	136.81	1.8563	135.72	135.27	137.12	-1.0858					84	37	3	0	0	0	0.48324	1	11116	11116		44.117	0	1	104120	+		43198	27956	35715	35738	46650	46650					0.15636087133361798
PLRTLGLNKYR	11	Unmodified	_PLRTLGLNKYR_					0	0	0			REV__ENST00000421887.2_1_5:174948933-174952897:+|nuORF	REV__ENST00000421887.2_1_5:174948933-174952897:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	444.26953125	3	444.269978	1329.7881	0.66341	0.00029474	-0.85654	-0.00038054	-0.19313	-8.5801E-05	444.2695760275752	70.917	1.4989	68.197	67.905	69.404	-2.7196					93	29	5	0	0	0	0.69589	1	3270	3270		31.068	1.5174	1	769250	+		43199	25612	35716	35739	46651	46651					0.13640120888135243
PLRVGSQPLI	10	Unmodified	_PLRVGSQPLI_					0	0	0			REV__PDE3A|p.A263Gfs*32|1|0.15|ENSG00000172572|chr12:20370071-20370072|-/GGGTGCGCCTGCCTCTGGCTGT|frameshift_variant	REV__PDE3A|p.A263Gfs*32|1|0.15|ENSG00000172572|chr12:20370071-20370072|-/GGGTGCGCCTGCCTCTGGCTGT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3319702148438	2	540.332216	1078.64988	0.34656	0.00018726	-4.1131	-0.0022225	-3.7666	-0.0020352	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.64697	1	13631	13631		36.447	4.4919	1	342200	+		43200	29284	35717	35740	46652	46652					0.11369997639667417
PLRVRIRQL	9	Unmodified	_PLRVRIRQL_					0	0	0			REV__nc|ENSG00000117139|Q9UGL1-2|KDM5B	REV__nc|ENSG00000117139|Q9UGL1-2|KDM5B	MULTI-MSMS	OvCa9_classI_Rep2	2	575.880859375	2	575.880199	1149.74584	0.38494	0.00022168	1.77	0.0010193	2.1549	0.001241	575.8811011364741	129.09	1.384	128.87	128.43	129.81	-0.22697					68	27	4	0	0	0	0.40667	3	12672	12642;12672;12678		51.335	20.832	1	149030	+		43201	18338	35718	35741	46653;46654;46655	46654					0.1769619027038516
PLRVRIRQL	9	Unmodified	_PLRVRIRQL_					0	0	0			REV__nc|ENSG00000117139|Q9UGL1-2|KDM5B	REV__nc|ENSG00000117139|Q9UGL1-2|KDM5B	MULTI-MSMS	OvCa9_classI_Rep3	3	575.880615234375	2	575.880199	1149.74584	-0.33635	-0.0001937	2.4703	0.0014226	2.1339	0.0012289	575.8816146863785	130.37	1.3721	129.25	128.83	130.21	-1.1121					69	27	4	0	0	0	0.53957	2	10337	10337;10381		38.806	6.8513	1	151570	+		43202	18338	35718	35741	46656;46657	46656					0.1769619027038516
PLRVSIAPQV	10	Unmodified	_PLRVSIAPQV_					0	0	0			REV__nc|ENSG00000107736|Q9H251-4|CDH23	REV__nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3302001953125	2	540.332216	1078.64988	0.34656	0.00018726	-4.1131	-0.0022225	-3.7666	-0.0020352	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.75313	1	13807	13807		24.519	3.5723	1	342200	+		43203	17855	35719	35742	46658	46658					0.11369997639667417
PLRYTMILT	9	Unmodified	_PLRYTMILT_					0	0	0		ENSG00000183269|ENST00000537935|OR52E8	ENSG00000183269|ENST00000537935|OR52E8	ENSG00000183269|ENST00000537935|OR52E8	MULTI-MSMS	OvCa99_classI_Rep5	1	554.3148193359375	2	554.315177	1106.6158	0.29235	0.00016205	-1.6664	-0.00092372	-1.3741	-0.00076166	554.3143259234861	114.4	2.7187	114.4	113.88	116.6	0					179	58	6	0	0	0	0.27001	1	13133	13133		66.429	2.222	1	35652000			43204	8060	35720	35743	46659	46659					0.06675833156396038
PLSELKNN	8	Unmodified	_PLSELKNN_					0	0	0			REV__ENSG00000171492|ENST00000337338|LRRC8D	REV__ENSG00000171492|ENST00000337338|LRRC8D	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.7460021972656	2	457.750724	913.486896	-0.99291	-0.00045451	1.1717	0.00053634	0.17878	8.1838E-05	457.751118793242	42.506	1.1933	39.526	39.264	40.458	-2.9804					40	22	2	0	0	0	0.028476	1	2038	2038		12.207	0	1	43402	+		43205	21618	35721	35744	46660	46660					0.026691945178072274
PLSFHSSRKPR	11	Unmodified	_PLSFHSSRKPR_					0	0	0			REV__ENST00000482061.6_1_3:155520358-155523958:-|nuORF	REV__ENST00000482061.6_1_3:155520358-155523958:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	437.7051696777344	3	437.914194	1310.72075	0.92565	0.00040535	-2.1927	-0.0009602	-1.267	-0.00055484	437.91321126158874	68.233	1.716	64.743	64.235	65.951	-3.4902					106	34	5	0	0	0	0.026113	1	5027	5027		24.232	13.234	1	1021300	+		43206	26494	35722	35745	46661	46661					0.07782090677164888
PLSHGAAR	8	Unmodified	_PLSHGAAR_					0	0	0		ENSG00000146830|ENST00000678049|GIGYF1;chr7:100689555-100693937|423|15.18|0.0|20.53|-|ENST00000646601|GIGYF1,GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	MULTI-SECPEP	OvCa9_classI_Rep2	2	405.71875	2	404.724844	807.435135	-0.24833	-0.0001005	-0.56098	-0.00022704	-0.8093	-0.00032754	404.72458714971395	119.27	0.78706	119.1	118.81	119.59	-0.17138					27	15	2	0	0	0	0.028476	1	11453	11453		18.324	0	1	41391			43207	522	35723	35746	46662	46662					0.023714956145568067
PLSILSAPQRA	11	Unmodified	_PLSILSAPQRA_					0	0	0			REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|138|3|sense	REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|138|3|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	576.841064453125	2	576.840405	1151.66626	-0.056574	-3.2634E-05	-0.99238	-0.00057244	-1.049	-0.00060508	576.8400378831547	97.949	1.4186	95.57	95.116	96.534	-2.3786					67	27	4	0	0	0	0.68399	1	8691	8691		35.152	2.3396	1	162360	+		43208	28256	35724	35747	46663	46663					0.0964907880577357
PLSILSAPQRA	11	Unmodified	_PLSILSAPQRA_					0	0	0			REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|138|3|sense	REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|138|3|sense	MULTI-MATCH	OvCa9_classI_Rep3	3		2	576.840405	1151.66626	-1.3454	-0.00077606	0.36039	0.00020789	-0.98497	-0.00056817	576.8408404632394	97.335	1.3113	95.576	95.157	96.469	-1.7595	0.0027399	0.00078576	NaN	35.152	66	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	195200	+		43209	28256	35724	35747							0.0964907880577357
PLSILSAPQRA	11	Unmodified	_PLSILSAPQRA_					0	0	0			REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|138|3|sense	REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|138|3|sense	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	576.840405	1151.66626	-0.056574	-3.2634E-05	-0.99238	-0.00057244	-1.049	-0.00060508	576.8400378831547	97.949	1.4186	95.57	95.116	96.534	-2.3786	-0.0027399	-0.00077491	NaN	35.152	67	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162360	+		43210	28256	35724	35747							0.0964907880577357
PLSIRSPYI	9	Unmodified	_PLSIRSPYI_					0	0	0			REV__ENST00000429417.1_1_2:192746108-192746309:-|nuORF	REV__ENST00000429417.1_1_2:192746108-192746309:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3059692382812	2	523.305667	1044.59678	0.3552	0.00018588	-1.1012	-0.00057627	-0.74601	-0.00039039	523.3049818602126	107.67	1.863	107.37	107.07	108.93	-0.30836					109	37	6	0	0	0	0.40667	1	10079	10079		51.335	1.8939	1	586410	+		43211	25700	35725	35748	46664	46664					0.0762661985700106
PLSKDILGR	9	Unmodified	_PLSKDILGR_					0	0	0		tr|A0A7D6VT09|A0A7D6VT09_9CLOTV-typeATPsynthasebetachainOS=ClostridiumintestinaleOX=36845GN=atpBPE=3SV=1	tr|A0A7D6VT09|A0A7D6VT09_9CLOTV-typeATPsynthasebetachainOS=ClostridiumintestinaleOX=36845GN=atpBPE=3SV=1	tr|A0A7D6VT09|A0A7D6VT09_9CLOTV-typeATPsynthasebetachainOS=ClostridiumintestinaleOX=36845GN=atpBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	499.80364990234375	2	499.803291	997.59203	2.9668	0.0014828	-3.4995	-0.0017491	-0.53271	-0.00026625	499.80144783197306	25.905	0.3849	23.195	23.033	23.418	-2.7097					15	9	2	0	0	0	0.59983	1	308	308		31.955	0	1	25775			43212	35077	35726	35749	46665	46665					0.09313735714226823
PLSKHASPE	9	Unmodified	_PLSKHASPE_					0	0	0			REV__ENST00000482384.1_1_1:109757484-109757604:+|nuORF	REV__ENST00000482384.1_1_1:109757484-109757604:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.26654052734375	2	483.256174	964.497795	0.016499	7.9735E-06	-0.57396	-0.00027737	-0.55746	-0.0002694	483.2556928084115	72.96	0.43146	72.96	72.723	73.155	0					16	10	2	0	0	0	0.027462	1	7112	7112		26.693	0	1	170260	+		43213	26500	35727	35750	46666	46666					0.014125968920893683
PLSKIQSKHL	10	Unmodified	_PLSKIQSKHL_					0	0	0			REV__tr|A0A7D6VTB0|A0A7D6VTB0_9CLOTGTP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07240PE=4SV=1	REV__tr|A0A7D6VTB0|A0A7D6VTB0_9CLOTGTP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07240PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	576.841064453125	2	575.850773	1149.68699	0.021708	1.2501E-05	-0.13836	-7.9672E-05	-0.11665	-6.7171E-05	576.3535113023449	97.956	0.15475	95.577	95.47	95.624	-2.3786					4	2	2	0	0	0	0.026994	1	8691	8691		40.778	10.209	1	4829.9	+		43214	31588	35728	35751	46667	46667					0.11813669185403342
PLSLLTPVL	9	Unmodified	_PLSLLTPVL_					0	0	0			REV__ATP1A3|p.C980Vfs*136|1|0.12|ENSG00000105409|chr19:41967325-41967325|G/-|frameshift_variant	REV__ATP1A3|p.C980Vfs*136|1|0.12|ENSG00000105409|chr19:41967325-41967325|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	476.8059997558594	2	476.807511	951.600469	0.28578	0.00013626	-3.2828	-0.0015653	-2.997	-0.001429	476.80579878083404	40.986	1.3783	38.276	37.848	39.226	-2.7097					68	27	3	0	0	0	0.6653	1	2149	2149		24.203	1.1603	1	368580	+		43215	15676	35729	35752	46668	46668					0.12273289630843465
PLSLVPKKGVI	11	Unmodified	_PLSLVPKKGVI_					0	0	0			REV__nc|ENSG00000124313|Q5JU85-3|IQSEC2	REV__nc|ENSG00000124313|Q5JU85-3|IQSEC2	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8807983398438	2	575.881542	1149.74853	0.38494	0.00022168	-0.56152	-0.00032337	-0.17658	-0.00010169	575.8811011364741	129.09	1.384	128.87	128.43	129.81	-0.22697					68	27	4	0	0	0	0.52842	2	12647	12647;12697		51.193	12.387	1	149030	+		43216	18680	35730	35753	46669;46670	46669					0.17964600884693027
PLSLVPKKGVI	11	Unmodified	_PLSLVPKKGVI_					0	0	0			REV__nc|ENSG00000124313|Q5JU85-3|IQSEC2	REV__nc|ENSG00000124313|Q5JU85-3|IQSEC2	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8810424804688	2	575.881542	1149.74853	-0.33635	-0.0001937	0.13878	7.9921E-05	-0.19757	-0.00011378	575.8816146863785	130.37	1.3721	129.25	128.83	130.21	-1.1121					69	27	4	0	0	0	0.67529	1	10349	10349		37.812	5.8567	1	151570	+		43217	18680	35730	35753	46671	46671					0.17964600884693027
PLSMILLSD	9	Unmodified	_PLSMILLSD_					0	0	0		ENSG00000184434|ENST00000380055|LRRC19	ENSG00000184434|ENST00000380055|LRRC19	ENSG00000184434|ENST00000380055|LRRC19	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.29913330078125	2	494.772811	987.531069	0.82048	0.00040595	-2.0381	-0.0010084	-1.2176	-0.00060244	494.77166595011545	139.58	0.46167	139.58	139.32	139.78	0					16	9	2	0	0	0	0.027462	1	16279	16279		37.159	14.117	1	42840			43218	8156	35731	35754	46672	46672					0.0368046261978634
PLSPHGSY	8	Unmodified	_PLSPHGSY_					0	0	0			REV__ENSG00000171467|ENST00000361428|ZNF318	REV__ENSG00000171467|ENST00000361428|ZNF318	MULTI-MSMS	OvCa99_classI_Rep5	1	429.2145690917969	2	429.211235	856.407917	0.17134	7.3543E-05	0.421	0.0001807	0.59234	0.00025424	429.2112665850875	68.921	0.57629	68.921	68.692	69.268	0					28	13	3	0	0	0	0.69415	1	6523	6523		44.531	2.1349	1	1262700	+		43219	21615	35732	35755	46673	46673					-0.026030327164789924
PLSPHGSY	8	Unmodified	_PLSPHGSY_					0	0	0			REV__ENSG00000171467|ENST00000361428|ZNF318	REV__ENSG00000171467|ENST00000361428|ZNF318	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	429.211235	856.407917	0.17134	7.3543E-05	0.421	0.0001807	0.59234	0.00025424	429.2112665850875	68.921	0.57629	68.921	68.692	69.268	0	-0.11636	2.1817E-05	NaN	44.531	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1262700	+		43220	21615	35732	35755							-0.026030327164789924
PLSPHGSY	8	Unmodified	_PLSPHGSY_					0	0	0			REV__ENSG00000171467|ENST00000361428|ZNF318	REV__ENSG00000171467|ENST00000361428|ZNF318	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	429.211235	856.407917	-0.65323	-0.00028037	0.31864	0.00013676	-0.33459	-0.00014361	429.21132244393266	72.55	0.58337	69.154	68.911	69.495	-3.3961	0.11636	-6.6047E-05	NaN	44.531	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23231	+		43221	21615	35732	35755							-0.026030327164789924
PLSPVGRLAP	10	Unmodified	_PLSPVGRLAP_					0	0	0			REV__ENST00000440650.6_1_7:106508155-106508485:+|nuORF	REV__ENST00000440650.6_1_7:106508155-106508485:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.7965393066406	2	503.805834	1005.59712	-0.12147	-6.1197E-05	0.42515	0.00021419	0.30368	0.00015299	503.8059394307931	56.665	0.37789	56.665	56.498	56.875	0					16	8	3	0	0	0	0.026802	1	4730	4730		42.396	11.892	1	318950	+		43222	25835	35733	35756	46674	46674					0.09454039576837658
PLSRDRLVQ	9	Unmodified	_PLSRDRLVQ_					0	0	0			REV__ENST00000355957.9_1_20:57226753-57226939:+|nuORF	REV__ENST00000355957.9_1_20:57226753-57226939:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	542.6224365234375	2	542.317097	1082.61964	0.047336	2.5671E-05	-2.1899	-0.0011876	-2.1426	-0.0011619	542.8164080393094	71.391	0.21093	68.884	68.752	68.963	-2.5071					5	3	2	0	0	0	0.027462	1	5734	5734		45.952	0	1	7243.8	+		43223	24757	35734	35757	46675	46675					0.08163638974451715
PLSRLGRII	9	Unmodified	_PLSRLGRII_					0	0	0			REV__GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant	REV__GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.8351440429688	2	512.834926	1023.6553	0.10768	5.5222E-05	-0.36696	-0.00018819	-0.25928	-0.00013297	512.8346053479938	90.268	1.681	87.693	87.248	88.929	-2.575					80	32	3	0	0	0	0.33652	1	7772	7772		58.782	5.4305	1	345810	+		43224	19015	35735	35758	46676	46676					0.14441721222135584
PLSRRVPQAL	10	Unmodified	_PLSRRVPQAL_					0	0	0			REV__ENSG00000109171|ENST00000264313|SLAIN2	REV__ENSG00000109171|ENST00000264313|SLAIN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	568.8453369140625	2	568.848564	1135.68258	0.54685	0.00031108	-4.2377	-0.0024106	-3.6909	-0.0020995	568.8459810585302	123.26	2.2433	121.89	120.96	123.2	-1.3666					118	44	3	0	0	0	0.6349	1	11682	11682		37.812	8.6415	1	383340	+		43225	17921	35736	35759	46677	46677					0.12016204762517191
PLSSTRFIP	9	Unmodified	_PLSSTRFIP_					0	0	0			REV__nc|ENSG00000072736|Q12968-5|NFATC3	REV__nc|ENSG00000072736|Q12968-5|NFATC3	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.31585693359375	2	509.290017	1016.56548	1.3448	0.00068492	-1.755	-0.00089381	-0.41017	-0.00020889	509.2889964155163	149.77	0.49753	149.77	149.5	149.99	0					17	9	2	0	0	0	0.027462	1	17516	17516		44.117	0	1	64558	+		43226	16920	35737	35760	46678	46678					0.05786046822890967
PLSTASGARDP	11	Unmodified	_PLSTASGARDP_					0	0	0		ENST00000571594.1_1_17:80687806-80688040:+|nuORF	ENST00000571594.1_1_17:80687806-80688040:+|nuORF	ENST00000571594.1_1_17:80687806-80688040:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	535.8331298828125	2	536.275095	1070.53564	-1.8615	-0.00099827	0.037873	2.031E-05	-1.8236	-0.00097796	536.7765689013465	116.88	0.49411	116.75	116.62	117.11	-0.12868					14	9	2	0	0	0	0.025594	1	11191	11191		49.536	7.1399	1	7990.1			43227	13901	35738	35761	46679	46679					0.0031906308690849983
PLSTHCVGERV	11	Unmodified	_PLSTHCVGERV_					0	0	0		ENST00000266546.10_1_12:7310874-7311150:+|nuORF	ENST00000266546.10_1_12:7310874-7311150:+|nuORF	ENST00000266546.10_1_12:7310874-7311150:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	599.302490234375	2	599.305872	1196.59719	0.64982	0.00038944	-4.2788	-0.0025643	-3.629	-0.0021749	599.3031624404956	115.95	1.3134	114.58	114.3	115.61	-1.3645					49	25	3	0	0	0	0.70761	1	10829	10829		27.047	3.5246	1	203860			43228	9958	35739	35762	46680	46680					0.0067567151454568375
PLSTLGLRPKW	11	Unmodified	_PLSTLGLRPKW_					0	0	0			REV__ENST00000269033.7_1_17:27955686-27956034:-|nuORF	REV__ENST00000269033.7_1_17:27955686-27956034:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	634.3773803710938	2	634.379697	1266.74484	0.70958	0.00045014	-3.9824	-0.0025264	-3.2728	-0.0020762	634.3769097150116	164.24	2.8363	164.24	163	165.84	0					295	106	3	0	0	0	0.70518	1	19211	19211		27.882	4.8398	1	532610	+		43229	24058	35740	35763	46681	46681					0.12213931110841258
PLSVIGELP	9	Unmodified	_PLSVIGELP_					0	0	0			REV__ENSG00000079112|ENST00000027335|CDH17	REV__ENSG00000079112|ENST00000027335|CDH17	MULTI-MSMS	OvCa9_classI_Rep2	2	462.77215576171875	2	462.773668	923.532783	-1.9809	-0.0009167	-1.2212	-0.00056512	-3.202	-0.0014818	462.77307246916536	37.809	0.68848	35.1	34.781	35.469	-2.7097					48	13	5	0	0	0	0.48324	1	1737	1737		44.117	3.3386	1	1223600	+		43230	17033	35741	35764	46682	46682					0.06795839700043871
PLSVMLSSI	9	Oxidation (M)	_PLSVM(Oxidation (M))LSSI_		PLSVM(1)LSSI		PLSVM(41)LSSI	0	0	1		tr|A0A553SUS9|A0A553SUS9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_06750PE=4SV=1	tr|A0A553SUS9|A0A553SUS9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_06750PE=4SV=1	tr|A0A553SUS9|A0A553SUS9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_06750PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	481.7673034667969	2	481.764986	961.515419	0.84493	0.00040706	3.3601	0.0016188	4.2051	0.0020258	481.7665805414294	152.43	0.93156	152.43	152.16	153.1	0					38	22	2	0	0	0	0.52083	1	17864	17864		40.573	7.057	1	153500			43231	34636	35742	35765	46683	46683		763			0.03312176102758713
PLTDSCIVGA	10	Unmodified	_PLTDSCIVGA_					0	0	0			REV__nc|ENSG00000187908|Q9UGM3-3|DMBT1	REV__nc|ENSG00000187908|Q9UGM3-3|DMBT1	MULTI-SECPEP	OvCa9_classI_Rep3	3	488.2793884277344	2	488.244418	974.474282	-0.10983	-5.3624E-05	2.2066	0.0010773	2.0967	0.0010237	488.2453039143037	104	0.4705	102.57	102.29	102.76	-1.4347					14	8	3	0	0	0	0.026552	1	7243	7243		53.351	0	1	8604	+		43232	29062	35743	35766	46684	46684					-0.013975849367398041
PLTEGNLHTI	10	Unmodified	_PLTEGNLHTI_					0	0	0		nc|ENSG00000198862|O94822-3|LTN1;ENSG00000198862|ENST00000361371|LTN1	nc|ENSG00000198862|O94822-3|LTN1	nc|ENSG00000198862|O94822-3|LTN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.7965087890625	2	547.795663	1093.57677	-0.29871	-0.00016363	0.24499	0.0001342	-0.053721	-2.9428E-05	547.7955534971053	90.585	2.0361	88.01	87.6	89.636	-2.575					92	37	4	0	0	0	0.52439	1	7827	7827		51.193	1.1682	1	521420			43233	15262	35744	35767	46685	46685					0.03372824126381602
PLTFIVIGPV	10	Unmodified	_PLTFIVIGPV_					0	0	0		tr|A0A553STY9|A0A553STY9_NIACIPTSbeta-glucosidetransportersubunitIIABCOS=NialliacirculansOX=1397GN=CEQ21_05960PE=4SV=1	tr|A0A553STY9|A0A553STY9_NIACIPTSbeta-glucosidetransportersubunitIIABCOS=NialliacirculansOX=1397GN=CEQ21_05960PE=4SV=1	tr|A0A553STY9|A0A553STY9_NIACIPTSbeta-glucosidetransportersubunitIIABCOS=NialliacirculansOX=1397GN=CEQ21_05960PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	528.3279418945312	2	528.328611	1054.64267	0.33475	0.00017686	-0.40473	-0.00021383	-0.069982	-3.6974E-05	528.3282724916941	128.79	3.3005	127.69	127.27	130.57	-1.0933					188	66	4	0	0	0	0.49049	1	10286	10286		55.504	11.387	1	235110			43234	34551	35745	35768	46686	46686					0.11753265039237704
PLTKRKGLAPQ	11	Unmodified	_PLTKRKGLAPQ_					0	0	0		nc|ENSG00000184887|Q96KE9-2|BTBD6;nc|ENSG00000184887|Q96KE9-1|BTBD6;ENSG00000184887|ENST00000392554|BTBD6	nc|ENSG00000184887|Q96KE9-2|BTBD6	nc|ENSG00000184887|Q96KE9-2|BTBD6	MULTI-MSMS	OvCa9_classI_Rep2	2	403.58697509765625	3	403.587307	1207.74009	-0.025043	-1.0107E-05	0.031474	1.2703E-05	0.0064315	2.5957E-06	403.58728537830933	61.847	1.6847	59.087	58.62	60.305	-2.7593					89	32	4	0	0	0	0.67712	1	4620	4620		37.508	1.8899	1	569970			43235	8198	35746	35769	46687	46687					0.14453046968060335
PLTLHCII	8	Unmodified	_PLTLHCII_					0	0	0			REV__ENST00000480128.1_1_12:46231109-46233281:+|nuORF	REV__ENST00000480128.1_1_12:46231109-46233281:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	454.2901611328125	2	455.264956	908.515359	0.47101	0.00021443	-0.25421	-0.00011573	0.2168	9.8702E-05	455.26458480327807	98.312	1.0147	95.934	95.675	96.69	-2.3786					43	19	3	0	0	0	0.028476	1	8783	8783		23.037	0	1	68630	+		43236	15656	35747	35770	46688	46688					0.05744220893382135
PLTLHCII	8	Unmodified	_PLTLHCII_					0	0	0			REV__ENST00000480128.1_1_12:46231109-46233281:+|nuORF	REV__ENST00000480128.1_1_12:46231109-46233281:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	455.264956	908.515359	1.5508	0.00070602	-1.5053	-0.00068533	0.045453	2.0693E-05	455.26406576624066	96.937	0.93321	95.978	95.629	96.562	-0.95856	-0.011001	-0.0008553	NaN	23.037	46	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55296	+		43237	15656	35747	35770							0.05744220893382135
PLTLHCII	8	Unmodified	_PLTLHCII_					0	0	0			REV__ENST00000480128.1_1_12:46231109-46233281:+|nuORF	REV__ENST00000480128.1_1_12:46231109-46233281:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	455.264956	908.515359	-0.41499	-0.00018893	0.47277	0.00021524	0.057784	2.6307E-05	455.2649674267392	97.815	1.0563	96.055	95.722	96.778	-1.7595	0.066297	0.00094582	NaN	23.037	48	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79115	+		43238	15656	35747	35770							0.05744220893382135
PLTLIKRHF	9	Unmodified	_PLTLIKRHF_					0	0	0			REV__ENSG00000204610|ENST00000376694|TRIM15	REV__ENSG00000204610|ENST00000376694|TRIM15	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.8150024414062	2	562.850576	1123.6866	1.7438	0.00098152	-1.9248	-0.0010833	-0.18092	-0.00010183	562.8494354809523	143.49	0.14906	143.49	143.41	143.56	0					4	2	2	0	0	0	0.027462	1	16765	16765		31.955	6.3808	1	15527	+		43239	23173	35748	35771	46689	46689					0.12970294256206216
PLTQLRGHP	9	Unmodified	_PLTQLRGHP_					0	0	0		nc|ENSG00000167483|Q86XR2-5|NIBAN3;nc|ENSG00000167483|Q86XR2-7|NIBAN3;nc|ENSG00000167483|Q86XR2-4|NIBAN3;ENSG00000167483|ENST00000599164|NIBAN3;nc|ENSG00000167483|Q86XR2-3|NIBAN3;nc|ENSG00000167483|Q86XR2-2|NIBAN3;nc|ENSG00000167483|Q86XR2|NIBAN3	nc|ENSG00000167483|Q86XR2-5|NIBAN3	nc|ENSG00000167483|Q86XR2-5|NIBAN3	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.31475830078125	2	509.793258	1017.57196	-0.1948	-9.9307E-05	-1.3767	-0.00070184	-1.5715	-0.00080114	509.79239715121156	40.86	0.57521	40.86	40.619	41.195	0					25	12	3	0	0	0	0.027462	1	2490	2490		25.45	8.7452	1	361820			43240	6792	35749	35772	46690	46690					0.06387984774266897
PLTQYDRV	8	Unmodified	_PLTQYDRV_					0	0	0			REV__nc|ENSG00000099204|O14639-4|ABLIM1	REV__nc|ENSG00000099204|O14639-4|ABLIM1	MULTI-MSMS	OvCa9_classI_Rep3	3	496.264892578125	2	496.263999	990.513445	1.8637	0.0009249	1.0785	0.0005352	2.9422	0.0014601	496.2643848501877	59.438	2.028	56.339	55.347	57.375	-3.0993					83	55	2	0	0	0	0.745	1	1957	1957		29.15	1.2673	1	32593	+		43241	17313	35750	35773	46691	46691					0.01780883409139733
PLTRILESE	9	Unmodified	_PLTRILESE_					0	0	0		ENST00000368914.7_1_1:151115137-151119048:-|nuORF	ENST00000368914.7_1_1:151115137-151119048:-|nuORF	ENST00000368914.7_1_1:151115137-151119048:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.2977294921875	2	529.298039	1056.58152	0.016215	8.5826E-06	-0.47599	-0.00025194	-0.45978	-0.00024336	529.2976255669407	140.62	1.5493	139.13	138.65	140.2	-1.4952					64	29	3	0	0	0	0.62352	1	13742	13742		29.15	0	1	125420			43242	10887	35751	35774	46692	46692					0.055497082691545074
PLTRKNILK	9	Unmodified	_PLTRKNILK_					0	0	0		tr|A0A7D6ZYD4|A0A7D6ZYD4_9CLOTGTP3',8-cyclaseOS=ClostridiumintestinaleOX=36845GN=moaAPE=3SV=1	tr|A0A7D6ZYD4|A0A7D6ZYD4_9CLOTGTP3',8-cyclaseOS=ClostridiumintestinaleOX=36845GN=moaAPE=3SV=1	tr|A0A7D6ZYD4|A0A7D6ZYD4_9CLOTGTP3',8-cyclaseOS=ClostridiumintestinaleOX=36845GN=moaAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	541.8555297851562	2	541.855858	1081.69716	-1.795	-0.00097265	1.1648	0.00063113	-0.63027	-0.00034151	541.8565280713503	51.838	1.3842	49.025	48.75	50.134	-2.8129					64	27	4	0	0	0	0.42057	1	3433	3433		50.025	5.9077	1	256500			43243	35915	35752	35775	46693	46693					0.15958276910646418
PLTRKRII	8	Unmodified	_PLTRKRII_					0	0	0		RNASEH2B|p.F194Lfs*20|1|0.13|ENSG00000136104|chr13:50945497-50945503|TTTTCTC/-|frameshift_variant	RNASEH2B|p.F194Lfs*20|1|0.13|ENSG00000136104|chr13:50945497-50945503|TTTTCTC/-|frameshift_variant	RNASEH2B|p.F194Lfs*20|1|0.13|ENSG00000136104|chr13:50945497-50945503|TTTTCTC/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.7644958496094	2	498.837468	995.660384	0.96466	0.00048121	-3.5043	-0.0017481	-2.5397	-0.0012669	498.8357597961962	127.03	0.72866	125.96	125.6	126.33	-1.0715					18	13	2	0	0	0	0.028476	1	9944	9944		40.573	0	1	11174			43244	32787	35753	35776	46694	46694					0.16238025084760466
PLTRRWEQ	8	Unmodified	_PLTRRWEQ_					0	0	0			REV__CYP4F2|p.R274W|1|0.15|ENSG00000186115|chr19:15889521-15889521|G/A|missense_variant	REV__CYP4F2|p.R274W|1|0.15|ENSG00000186115|chr19:15889521-15889521|G/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	542.8103637695312	2	543.296165	1084.57778	0.091849	4.9901E-05	2.0265	0.001101	2.1184	0.0011509	543.2969209722004	73.31	0.29675	70.823	70.677	70.974	-2.4873					6	5	2	0	0	0	0.028476	1	3559	3559		40.573	11.403	1	7403.1	+		43245	16262	35754	35777	46695	46695					0.03887083285940207
PLTSRFQPI	9	Unmodified	_PLTSRFQPI_					0	0	0			REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.8391723632812	2	529.803291	1057.59203	-0.12434	-6.5875E-05	1.0422	0.00055215	0.91784	0.00048627	529.8037402042219	33.172	0.44725	30.477	30.352	30.799	-2.6954					14	8	2	0	0	0	0.027462	1	863	863		21.96	0	1	44109	+		43246	17113	35755	35778	46696	46696					0.06553735714237519
PLTTFQDQLN	10	Unmodified	_PLTTFQDQLN_					0	0	0		ENST00000549820.1_1_12:113344820-113354315:+|nuORF;nc|ENSG00000089127|P00973-4|OAS1;nc|ENSG00000089127|P00973-2|OAS1;ENSG00000089127|ENST00000202917|OAS1;nc|ENSG00000089127|P00973-3|OAS1	ENST00000549820.1_1_12:113344820-113354315:+|nuORF	ENST00000549820.1_1_12:113344820-113354315:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	588.8011474609375	2	588.798403	1175.58225	1.179	0.00069422	4.3628	0.0025688	5.5418	0.003263	588.8008652532537	144.86	1.5276	144.86	144.55	146.08	0					77	31	5	0	0	0	0.50999	1	16945	16945		52.937	4.9772	1	1137400			43247	1810	35756	35779	46697	46697					0.0014850291820494022
PLTTQQPQS	9	Unmodified	_PLTTQQPQS_					0	0	0		ENSG00000157152|ENST00000621198|SYN2;nc|ENSG00000157152|Q92777-2|SYN2	ENSG00000157152|ENST00000621198|SYN2	ENSG00000157152|ENST00000621198|SYN2	MULTI-MSMS	OvCa99_classI_Rep5	1	500.2621154785156	2	500.258914	998.503274	1.3743	0.00068751	4.4246	0.0022134	5.7989	0.0029009	500.2609959121263	147.53	1.7605	147.53	147.21	148.97	0					83	35	4	0	0	0	0.1944	1	17293	17293		77.318	8.8329	1	1454700			43248	5877	35757	35780	46698	46698					0.0039627568389732915
PLTTWSLPPF	10	Unmodified	_PLTTWSLPPF_					0	0	0		sp|P09705|US29_HCMVAUncharacterizedproteinHHRF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US29PE=3SV=1;sp|F5HG95|US29_HCMVMUncharacterizedproteinUS29OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US29PE=3SV=1	sp|P09705|US29_HCMVAUncharacterizedproteinHHRF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US29PE=3SV=1	sp|P09705|US29_HCMVAUncharacterizedproteinHHRF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US29PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.8271484375	2	579.813325	1157.6121	0.24451	0.00014177	1.3633	0.00079048	1.6078	0.00093225	579.8140783292189	160.33	0.85153	160.33	160.06	160.91	0					23	16	3	0	0	0	0.026665	1	18806	18806		51.335	0	1	64002			43249	32874	35758	35781	46699	46699					0.039594866541847296
PLTVQKSNILV	11	Unmodified	_PLTVQKSNILV_					0	0	0			REV__ZAN|p.S2325Lfs*5|1|0.06|ENSG00000146839|chr7:100786133-100786134|-/G|frameshift_variant	REV__ZAN|p.S2325Lfs*5|1|0.06|ENSG00000146839|chr7:100786133-100786134|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3704223632812	2	606.371538	1210.72852	-1.3399	-0.00081245	-1.8512	-0.0011225	-3.191	-0.001935	606.3703052098949	148.27	2.4393	146.84	145.43	147.87	-1.4351					149	49	5	0	0	0	0.72064	1	14484	14484		22.58	2.5829	1	591330	+		43250	20030	35759	35782	46700	46700					0.13158805154080255
PLTYHYVQS	9	Unmodified	_PLTYHYVQS_					0	0	0		tr|A0A553SPL5|A0A553SPL5_NIACIBifunctionalmetallophosphatase/5'-nucleotidaseOS=NialliacirculansOX=1397GN=CEQ21_26605PE=3SV=1	tr|A0A553SPL5|A0A553SPL5_NIACIBifunctionalmetallophosphatase/5'-nucleotidaseOS=NialliacirculansOX=1397GN=CEQ21_26605PE=3SV=1	tr|A0A553SPL5|A0A553SPL5_NIACIBifunctionalmetallophosphatase/5'-nucleotidaseOS=NialliacirculansOX=1397GN=CEQ21_26605PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.287353515625	2	554.277106	1106.53966	2.7948	0.0015491	-0.25232	-0.00013986	2.5425	0.0014092	554.2769076738354	96.314	1.0109	96.314	96.039	97.05	0					50	23	3	0	0	0	0.027462	1	10559	10559		21.96	4.5949	1	4184100			43251	34058	35760	35783	46701	46701					-0.009348474193984657
PLVAPMDKMS	10	Unmodified	_PLVAPMDKMS_					0	0	0			REV__tr|A0A553SKA2|A0A553SKA2_NIACIPorphobilinogendeaminaseOS=NialliacirculansOX=1397GN=hemCPE=3SV=1	REV__tr|A0A553SKA2|A0A553SKA2_NIACIPorphobilinogendeaminaseOS=NialliacirculansOX=1397GN=hemCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	544.7764892578125	2	544.77757	1087.54059	1.5844	0.00086316	1.8309	0.00099744	3.4153	0.0018606	544.7783465181305	61.638	1.529	58.569	57.997	59.526	-3.0685					84	39	3	0	0	0	0.76627	1	2229	2229		23.042	3.0457	1	38046	+		43252	30099	35761	35784	46702	46702					0.0003190763366092142
PLVDRRFPK	9	Unmodified	_PLVDRRFPK_					0	0	0		FAM186B|p.F448Sfs*18|1|0.27|ENSG00000135436|chr12:49600297-49600297|A/-|frameshift_variant;nc|ENSG00000135436|Q8IYM0-2|FAM186B;ENST00000533372.1_1_12:49976813-49999059:-|nuORF;ENSG00000135436|ENST00000257894|FAM186B	FAM186B|p.F448Sfs*18|1|0.27|ENSG00000135436|chr12:49600297-49600297|A/-|frameshift_variant	FAM186B|p.F448Sfs*18|1|0.27|ENSG00000135436|chr12:49600297-49600297|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.8092651367188	2	564.337833	1126.66111	0.35885	0.00020252	-2.5538	-0.0014412	-2.1949	-0.0012387	564.3366307234924	95.837	0.7087	93.412	93.204	93.913	-2.4256					21	13	2	0	0	0	0.027461	1	8451	8451		49.442	20.292	1	60048			43253	4379	35762	35785	46703	46703					0.10284819733806216
PLVDRRFPKK	10	Unmodified	_PLVDRRFPKK_					0	0	0		FAM186B|p.F448Sfs*18|1|0.27|ENSG00000135436|chr12:49600297-49600297|A/-|frameshift_variant;nc|ENSG00000135436|Q8IYM0-2|FAM186B;ENST00000533372.1_1_12:49976813-49999059:-|nuORF;ENSG00000135436|ENST00000257894|FAM186B	FAM186B|p.F448Sfs*18|1|0.27|ENSG00000135436|chr12:49600297-49600297|A/-|frameshift_variant	FAM186B|p.F448Sfs*18|1|0.27|ENSG00000135436|chr12:49600297-49600297|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	628.3843383789062	2	628.385314	1254.75608	-4.0512	-0.0025457	-0.39444	-0.00024786	-4.4456	-0.0027935	628.3849132400738	150.53	4.7174	149.58	148	152.71	-0.95647					178	94	2	0	0	0	0.79213	1	12751	12751		19.997	0	1	419100			43254	4379	35763	35786	46704	46704					0.13888753204969362
PLVEPVREP	9	Unmodified	_PLVEPVREP_					0	0	0		ENST00000534553.5_1_11:61722629-61730618:+|nuORF	ENST00000534553.5_1_11:61722629-61730618:+|nuORF	ENST00000534553.5_1_11:61722629-61730618:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	518.3003540039062	2	518.295299	1034.57605	0.55863	0.00028953	-1.1323	-0.00058686	-0.57366	-0.00029732	518.2947779627386	92.589	2.8086	91.421	91.024	93.832	-1.168					161	54	5	0	0	0	0.36502	1	8289	8289		55.504	4.1688	1	5418500			43255	13359	35764	35787	46705	46705					0.06014029477319127
PLVGTDPAT	9	Unmodified	_PLVGTDPAT_					0	0	0		ENST00000294507.3_1_1:31205470-31205635:-|nuORF	ENST00000294507.3_1_1:31205470-31205635:-|nuORF	ENST00000294507.3_1_1:31205470-31205635:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	436.2490234375	2	435.732	869.449448	0.24509	0.00010679	1.0191	0.00044406	1.2642	0.00055085	435.73247815307536	50.774	0.44178	50.774	50.551	50.993	0					15	9	2	0	0	0	0.027462	1	3888	3888		31.955	18.996	1	84359			43256	10115	35765	35788	46706	46706					0.009501032521825437
PLVKWYNFN	9	Unmodified	_PLVKWYNFN_					0	0	0			REV__ENST00000555147.1_1_16:89984433-89984928:+|nuORF	REV__ENST00000555147.1_1_16:89984433-89984928:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	590.8145141601562	2	590.811116	1179.60768	1.8065	0.0010673	3.4819	0.0020572	5.2884	0.0031244	590.8131369116801	106.85	1.0698	106.85	106.49	107.56	0					54	24	3	0	0	0	0.46377	1	12023	12023		45.952	5.3793	1	1074000	+		43257	27539	35766	35789	46707	46707					0.02506022231273164
PLVPLERLV	9	Unmodified	_PLVPLERLV_					0	0	0		chr7:94421062-94423092|99|202.92|0.0|24.27|+|1|COL1A2,None|1	chr7:94421062-94423092|99|202.92|0.0|24.27|+|1|COL1A2,None|1	chr7:94421062-94423092|99|202.92|0.0|24.27|+|1|COL1A2,None|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.2947387695312	2	518.331685	1034.64882	0.60048	0.00031125	2.6343	0.0013654	3.2347	0.0016767	518.3329537488836	92.692	0.47176	91.524	91.235	91.706	-1.168					16	8	2	0	0	0	0.027433	1	8265	8265		51.335	0	1	31948			43258	535	35767	35790	46708	46708					0.13287783270743603
PLVPPRSFVPP	11	Unmodified	_PLVPPRSFVPP_					0	0	0		ENSG00000283439|ENST00000636696|SPEM3	ENSG00000283439|ENST00000636696|SPEM3	ENSG00000283439|ENST00000636696|SPEM3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	603.3010864257812	2	603.355691	1204.69683	0.89242	0.00053845	-4.4715	-0.0026979	-3.5791	-0.0021595	603.352858718333	60.859	1.6015	57.429	56.996	58.598	-3.43					70	32	4	0	0	0	0.025638	1	4119	4119		37.812	8.662	1	262200			43259	9615	35768	35791	46709	46709					0.10266857190799783
PLVPPRSFVPP	11	Unmodified	_PLVPPRSFVPP_					0	0	0		ENSG00000283439|ENST00000636696|SPEM3	ENSG00000283439|ENST00000636696|SPEM3	ENSG00000283439|ENST00000636696|SPEM3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	603.355691	1204.69683	-1.0938	-0.00065998	-2.5132	-0.0015163	-3.607	-0.0021763	603.3541328211796	60.107	1.4651	57.336	56.725	58.19	-2.7702	-0.046219	0.00099686	NaN	36.447	49	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119310			43260	9615	35768	35791							0.10266857190799783
PLVPTIILSVS	11	Unmodified	_PLVPTIILSVS_					0	0	0		ENST00000571688.5_2_16:11643018-11643147:-|nuORF	ENST00000571688.5_2_16:11643018-11643147:-|nuORF	ENST00000571688.5_2_16:11643018-11643147:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	569.835205078125	2	569.857732	1137.70091	-0.92428	-0.00052671	-0.94948	-0.00054107	-1.8738	-0.0010678	569.8576141044812	100.22	0.67053	97.893	97.717	98.387	-2.3253					20	12	3	0	0	0	0.025746	1	9014	9014		25.574	15.868	1	33087			43261	13904	35769	35792	46710	46710					0.1375690189386205
PLVRLQEA	8	Unmodified	_PLVRLQEA_					0	0	0		ENSG00000145198|ENST00000691901|VWA5B2;ENST00000461141.5_1_3:183952309-183959823:+|nuORF	ENSG00000145198|ENST00000691901|VWA5B2	ENSG00000145198|ENST00000691901|VWA5B2	MULTI-MSMS	OvCa9_classI_Rep2	2	463.2777099609375	2	463.276909	924.539266	-0.62606	-0.00029004	0.43607	0.00020202	-0.18999	-8.8016E-05	463.27705603624554	74.992	1.8677	73.021	72.376	74.244	-1.9711					93	35	4	0	0	0	0.68714	1	6139	6139		45.952	1.8352	1	495750			43262	5208	35770	35793	46711	46711					0.07397777651419801
PLVRRLQLR	9	Unmodified	_PLVRRLQLR_					0	0	0		SHKBP1|p.V208Afs*47|1|0.42|ENSG00000160410|chr19:40580625-40580626|-/C|frameshift_variant;nc|ENSG00000160410|Q8TBC3-2|SHKBP1;ENSG00000160410|ENST00000291842|SHKBP1	SHKBP1|p.V208Afs*47|1|0.42|ENSG00000160410|chr19:40580625-40580626|-/C|frameshift_variant	SHKBP1|p.V208Afs*47|1|0.42|ENSG00000160410|chr19:40580625-40580626|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8814086914062	2	575.880199	1149.74584	-0.33635	-0.0001937	2.4703	0.0014226	2.1339	0.0012289	575.8816146863785	130.37	1.3721	129.25	128.83	130.21	-1.1121					69	27	4	0	0	0	0.6653	1	10342	10342		24.203	0	1	151570			43263	6065	35771	35794	46712	46712					0.1769619027038516
PLVRRLQLR	9	Unmodified	_PLVRRLQLR_					0	0	0		SHKBP1|p.V208Afs*47|1|0.42|ENSG00000160410|chr19:40580625-40580626|-/C|frameshift_variant;nc|ENSG00000160410|Q8TBC3-2|SHKBP1;ENSG00000160410|ENST00000291842|SHKBP1	SHKBP1|p.V208Afs*47|1|0.42|ENSG00000160410|chr19:40580625-40580626|-/C|frameshift_variant	SHKBP1|p.V208Afs*47|1|0.42|ENSG00000160410|chr19:40580625-40580626|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8804931640625	2	575.880199	1149.74584	2.6187	0.0015081	-0.52451	-0.00030205	2.0942	0.001206	575.8797536026407	130.77	1.5941	129.29	128.86	130.45	-1.4779					88	32	4	0	0	0	0.55588	3	12562	12529;12539;12562		37.159	2.2429	1	237440			43264	6065	35771	35794	46713;46714;46715	46715					0.1769619027038516
PLVSNFTLSDD	11	Unmodified	_PLVSNFTLSDD_					0	0	0			REV__nc|ENSG00000143952|Q9P1Q0-4|VPS54;REV__nc|ENSG00000143952|Q9P1Q0-3|VPS54	REV__nc|ENSG00000143952|Q9P1Q0-4|VPS54	MULTI-SECPEP	OvCa9_classI_Rep4_	4	603.3010864257812	2	604.295693	1206.57683	0.94111	0.00056871	-3.6471	-0.0022039	-2.706	-0.0016352	604.2925646157805	60.777	0.45074	57.347	57.144	57.594	-3.43					15	8	2	0	0	0	0.025496	1	4119	4119		40.778	6.6056	1	11626	+		43265	19878;28903	35772	35795	46716	46716					-0.018192206642879682
PLVSVFWKPM	10	Unmodified	_PLVSVFWKPM_					0	0	0		ENST00000324439.9_1_4:76407428-76407527:-|nuORF	ENST00000324439.9_1_4:76407428-76407527:-|nuORF	ENST00000324439.9_1_4:76407428-76407527:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	603.3175659179688	2	602.33337	1202.65219	1.3256	0.00079845	-3.1933	-0.0019234	-1.8677	-0.001125	602.3310978084853	155.62	0.95874	155.62	154.78	155.73	0					22	18	2	0	0	0	0.027056	1	18224	18224		20.947	2.6848	1	39425			43266	10396	35773	35796	46717	46717					0.05896710053093557
PLVWTLSPL	9	Unmodified	_PLVWTLSPL_					0	0	0		ENST00000589882.1_1_6:41248622-41249060:-|nuORF;nc|ENSG00000124731|Q9NP99-3|TREM1	ENST00000589882.1_1_6:41248622-41249060:-|nuORF	ENST00000589882.1_1_6:41248622-41249060:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.3018798828125	2	513.305136	1024.59572	-0.6359	-0.00032641	-3.8153	-0.0019584	-4.4512	-0.0022848	513.3031570189453	104.08	2.9198	101.97	101.54	104.46	-2.1192					129	56	4	0	0	0	0.32337	1	9393	9393		60.294	2.4827	1	1348000			43267	14098	35774	35797	46718	46718					0.08440405488090619
PLWDALSYL	9	Unmodified	_PLWDALSYL_					0	0	0		nc|ENSG00000166105|Q8NCI6-2|GLB1L3;ENSG00000166105|ENST00000431683|GLB1L3	nc|ENSG00000166105|Q8NCI6-2|GLB1L3	nc|ENSG00000166105|Q8NCI6-2|GLB1L3	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.7745361328125	2	539.2844	1076.55425	1.7825	0.00096127	-1.244	-0.00067088	0.53848	0.00029039	539.2824963016647	126.47	0.27633	126.47	126.37	126.65	0					7	5	2	0	0	0	0.027449	1	14630	14630		40.573	3.4135	1	39135			43268	6637	35775	35798	46719	46719					0.01903224728744135
PLWGTQSTLL	10	Unmodified	_PLWGTQSTLL_					0	0	0			REV__SVA_D_dup188|chr2:71160475-71162096:+|4.671785527912675|0.3567656144168134|3.71|429.0|50|1|anti-sense	REV__SVA_D_dup188|chr2:71160475-71162096:+|4.671785527912675|0.3567656144168134|3.71|429.0|50|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	557.7623901367188	2	558.308406	1114.60226	0.065624	3.6638E-05	-0.26784	-0.00014954	-0.20222	-0.0001129	558.3083389412383	98.696	0.64773	97.803	97.459	98.106	-0.89305					17	12	2	0	0	0	0.026994	1	8959	8959		25.574	17.884	1	19321	+		43269	29475	35776	35799	46720	46720					0.04954298648817712
PLWKRKVVQE	10	Unmodified	_PLWKRKVVQE_					0	0	0		ENST00000372902.3_1_X:100601433-100601490:-|nuORF	ENST00000372902.3_1_X:100601433-100601490:-|nuORF	ENST00000372902.3_1_X:100601433-100601490:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8824462890625	2	641.885147	1281.75574	-4.0037	-0.0025699	-0.45506	-0.00029209	-4.4587	-0.002862	642.3862707583961	149.94	3.9275	149.71	147.52	151.45	-0.22696					225	78	5	0	0	0	0.79917	2	15150	15150;15249		19.104	2.3861	1	222110			43270	10989	35777	35800	46721;46722	46721					0.12613333485114708
PLWLLLLGLL	10	Unmodified	_PLWLLLLGLL_					0	0	0			REV__nc|ENSG00000244575|A0A075B6S5|IGKV1-27	REV__nc|ENSG00000244575|A0A075B6S5|IGKV1-27	MULTI-MSMS	OvCa9_classI_Rep2	2	575.880615234375	2	575.883553	1149.75255	0.38494	0.00022168	-4.0542	-0.0023347	-3.6693	-0.0021131	575.8811011364741	129.09	1.384	128.87	128.43	129.81	-0.22697					68	27	4	0	0	0	0.73286	1	12652	12652		26.796	2.5934	1	149030	+		43271	29163	35778	35801	46723	46723					0.18366690378434214
PLWPALPP	8	Unmodified	_PLWPALPP_					0	0	0		ENST00000342694.6_1_9:35792715-35792763:+|nuORF	ENST00000342694.6_1_9:35792715-35792763:+|nuORF	ENST00000342694.6_1_9:35792715-35792763:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	445.7614440917969	2	445.760364	889.506175	2.4726	0.0011022	-0.68493	-0.00030531	1.7876	0.00079686	445.7599169979036	125.28	1.1539	125.28	124.93	126.09	0					57	27	3	0	0	0	0.35898	2	14473	14473;14499		96.041	4.0209	1	1170000			43272	10584	35779	35802	46724;46725	46724					0.057001955993769116
PLWPNLYF	8	Unmodified	_PLWPNLYF_					0	0	0			REV__MER51E_dup213|chr19:56234920-56237271:+|1.2535105915377431|0.3253014843551329|1.95|426.0|79|1|anti-sense	REV__MER51E_dup213|chr19:56234920-56237271:+|1.2535105915377431|0.3253014843551329|1.95|426.0|79|1|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	525.269775390625	2	525.276378	1048.5382	1.3294	0.00069831	-3.3889	-0.0017801	-2.0595	-0.0010818	525.2743931971725	125.15	0.49526	125.15	124.84	125.33	0					21	11	2	0	0	0	0.71055	1	14458	14458		41.208	1.9555	1	228060	+		43273	28656	35780	35803	46726	46726					0.015875632825100183
PLWSLRALV	9	Unmodified	_PLWSLRALV_					0	0	0			REV__ENST00000356638.7_1_11:62397729-62397864:-|nuORF	REV__ENST00000356638.7_1_11:62397729-62397864:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	527.822509765625	2	527.824027	1053.6335	NaN	NaN	NaN	NaN	NaN	NaN	NaN	54.34	1	51.093	50.593	51.593	-3.2474								0	0	0	0.17121	1	3364	3364		47.916	0	1		+		43274	24767	35781	35804	46727	46727					0.10882916473542537
PLWSRIIEDPA	11	Unmodified	_PLWSRIIEDPA_					0	0	0		ENSG00000125746|ENST00000245925|EML2;nc|ENSG00000125746|O95834-2|EML2;nc|ENSG00000125746|O95834-3|EML2	ENSG00000125746|ENST00000245925|EML2	ENSG00000125746|ENST00000245925|EML2	MULTI-MSMS	OvCa99_classI_Rep5	1	432.9032287597656	3	432.903072	1295.68739	-0.19328	-8.3672E-05	0.8283	0.00035858	0.63502	0.0002749	432.9034102939429	37.785	2.1137	37.785	37.391	39.505	0					112	46	5	0	0	0	0.68391	1	2138	2138		35.178	0	1	2384200			43275	3731	35782	35805	46728	46728					0.051370441146445955
PLWWVSSI	8	Unmodified	_PLWWVSSI_					0	0	0		ENSG00000186889|ENST00000335390|TMEM17;ENST00000479763.5_1_2:62729532-62738946:-|nuORF;ENST00000494919.1_1_2:62729532-62733264:-|nuORF	ENSG00000186889|ENST00000335390|TMEM17	ENSG00000186889|ENST00000335390|TMEM17	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.2957763671875	2	494.268553	986.522553	-0.35369	-0.00017482	-2.9862	-0.001476	-3.3399	-0.0016508	494.266963062455	91.588	1.4247	89.045	88.244	89.669	-2.5425					62	27	3	0	0	0	0.028476	1	7974	7974		65.897	41.695	1	82794			43276	8372	35783	35806	46729	46729					0.028752767654850686
PLYIGLPE	8	Unmodified	_PLYIGLPE_					0	0	0			REV__HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|90|2|sense	REV__HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|90|2|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.7617492675781	2	451.255111	900.49567	0.26857	0.0001212	-4.214	-0.0019016	-3.9454	-0.0017804	451.2530986693245	63.398	1.4028	59.923	59.577	60.98	-3.475					55	28	3	0	0	0	0.028476	1	4429	4429		19.36	0	1	466750	+		43277	28276	35784	35807	46730	46730					0.041441681542892184
PLYKSLID	8	Unmodified	_PLYKSLID_					0	0	0			REV__ENSG00000085999|ENST00000371975|RAD54L	REV__ENSG00000085999|ENST00000371975|RAD54L	MULTI-SECPEP	OvCa9_classI_Rep3	3	475.3133850097656	2	474.773668	947.532783	1.116	0.00052984	-1.0043	-0.0004768	0.11172	5.3041E-05	474.77296632189484	103.96	1.1973	102.53	102.18	103.38	-1.4347					31	22	2	0	0	0	0.028476	1	7241	7241		33.516	3.0119	1	57022	+		43278	17144	35785	35808	46731	46731					0.056918397000458754
PLYQQRRGL	9	Unmodified	_PLYQQRRGL_					0	0	0		nc|ENSG00000100731|Q96RV3-4|PCNX1;nc|ENSG00000100731|Q96RV3-3|PCNX1;ENSG00000100731|ENST00000304743|PCNX1;nc|ENSG00000100731|Q96RV3-2|PCNX1;ENST00000554879.5_1_14:71374480-71476401:+|nuORF	nc|ENSG00000100731|Q96RV3-4|PCNX1	nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	566.810302734375	2	565.825089	1129.63563	0.08863	5.0149E-05	2.887	0.0016336	2.9757	0.0016837	565.8263440393666	55.562	0.50726	52.268	52.008	52.516	-3.2944					13	9	2	0	0	0	0.027462	1	3484	3484		18.324	0	1	16070			43279	2100	35786	35809	46732	46732					0.07599345211360742
PLYSDLHPVSL	11	Unmodified	_PLYSDLHPVSL_					0	0	0		ENST00000515519.5_1_5:148442977-148443214:+|nuORF	ENST00000515519.5_1_5:148442977-148443214:+|nuORF	ENST00000515519.5_1_5:148442977-148443214:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	620.8335571289062	2	620.832246	1239.64994	-1.1735	-0.00072857	0.82244	0.0005106	-0.3511	-0.00021797	620.8327213809367	100.32	3.4534	97.999	97.618	101.07	-2.3247					166	67	6	0	0	0	0.18846	1	9022	9022		64.207	0	1	2496100			43280	13047	35787	35810	46733	46733					0.039699528490018565
PMAAERPPD	9	Unmodified	_PMAAERPPD_					0	0	0			REV__ENST00000515737.5_1_4:2825262-2835558:+|nuORF	REV__ENST00000515737.5_1_4:2825262-2835558:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.25469970703125	2	492.234384	982.454216	-0.4834	-0.00023795	3.8162	0.0018785	3.3328	0.0016405	492.2362440368931	81.001	0.8349	78.291	78.052	78.887	-2.7106					34	16	3	0	0	0	0.027462	1	6658	6658		23.042	0	1	133500	+		43281	17162	35788	35811	46734	46734					-0.037713358767064165
PMAKLSCLF	9	Unmodified	_PMAKLSCLF_					0	0	0		ENST00000602586.1_1_1:16545087-16552470:-|nuORF	ENST00000602586.1_1_1:16545087-16552470:-|nuORF	ENST00000602586.1_1_1:16545087-16552470:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.3210754394531	2	505.264099	1008.51364	-0.88909	-0.00044923	3.2166	0.0016252	2.3275	0.001176	505.26576789740227	133.51	0.93369	132.38	132.07	133.01	-1.1249					34	18	3	0	0	0	0.027441	1	10739	10739		45.952	1.4209	1	24053			43282	14242	35789	35812	46735	46735					0.00972843813133295
PMALCIILIA	10	Unmodified	_PMALCIILIA_					0	0	0			REV__tr|A0A553SH07|A0A553SH07_NIACITeichuronicacidbiosynthesisproteinTuaFOS=NialliacirculansOX=1397GN=CEQ21_11930PE=4SV=1	REV__tr|A0A553SH07|A0A553SH07_NIACITeichuronicacidbiosynthesisproteinTuaFOS=NialliacirculansOX=1397GN=CEQ21_11930PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.797119140625	2	529.311049	1056.60755	1.2279	0.00064994	0.78928	0.00041778	2.0172	0.0010677	529.3112407902506	102.03	0.51365	102.03	101.82	102.34	0					31	11	4	0	0	0	0.026578	1	11339	11339		44.531	0	1	753340	+		43283	29759	35790	35813	46736	46736					0.08150562915443516
PMAPRELPT	9	Unmodified	_PMAPRELPT_					0	0	0		ENST00000574149.6_1_17:19314736-19316565:+|nuORF;ENSG00000128482|ENST00000461366|RNF112;nc|ENSG00000128482|Q9ULX5-2|RNF112	ENST00000574149.6_1_17:19314736-19316565:+|nuORF	ENST00000574149.6_1_17:19314736-19316565:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.32025146484375	2	506.268227	1010.5219	0.89351	0.00045235	0.62826	0.00031807	1.5218	0.00077042	506.26826916293254	131.99	1.3138	131.99	131.43	132.75	0					35	27	2	0	0	0	0.027441	1	15273	15273		29.15	0	1	98660			43284	13927	35791	35814	46737	46737					0.017061140540931774
PMAQSVAVGP	10	Unmodified	_PMAQSVAVGP_					0	0	0		nc|ENSG00000183283|Q15038-5|DAZAP2;nc|ENSG00000183283|Q15038-2|DAZAP2;ENSG00000183283|ENST00000412716|DAZAP2	nc|ENSG00000183283|Q15038-5|DAZAP2	nc|ENSG00000183283|Q15038-5|DAZAP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.77618408203125	2	478.747127	955.479702	-0.12335	-5.9054E-05	-0.48866	-0.00023395	-0.61201	-0.000293	478.7468082780642	74.558	0.82088	71.328	70.952	71.773	-3.2308					25	16	2	0	0	0	0.028033	1	5870	5870		87.754	0	1	55640			43285	15211	35792	35815	46738	46738					0.00018138645737053594
PMFTAVTNSV	10	Oxidation (M)	_PM(Oxidation (M))FTAVTNSV_		PM(1)FTAVTNSV		PM(99)FTAVTNSV	0	0	1		nc|ENSG00000095713|Q9NQ79-3|CRTAC1;nc|ENSG00000095713|Q9NQ79-2|CRTAC1;ENSG00000095713|ENST00000370597|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	nc|ENSG00000095713|Q9NQ79-3|CRTAC1	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.78515625	2	541.762975	1081.5114	-0.32797	-0.00017768	2.7604	0.0014955	2.4324	0.0013178	541.7651358136616	91.01	0.40297	88.964	88.706	89.109	-2.0455					10	7	2	0	0	0	0.026785	1	5687	5687		98.629	16.389	1	13860			43286	1937	35793	35816	46739	46739		68			-0.0260991339098382
PMFVDNDLT	9	Unmodified	_PMFVDNDLT_					0	0	0			REV__PAXBP1|p.D746N|1|0.05|ENSG00000159086|chr21:32743709-32743709|C/T|missense_variant	REV__PAXBP1|p.D746N|1|0.05|ENSG00000159086|chr21:32743709-32743709|C/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.2836303710938	2	526.241875	1050.4692	-0.21912	-0.00011531	2.4994	0.0013153	2.2803	0.0012	526.2432858000298	115.19	0.60686	113.8	113.46	114.07	-1.3977					18	11	2	0	0	0	0.027462	1	10731	10731		45.952	15.448	1	18540	+		43287	29279	35794	35817	46740	46740					-0.05401888799360677
PMGIYLLLV	9	Unmodified	_PMGIYLLLV_					0	0	0		ENST00000555259.5_1_14:31112578-31185169:+|nuORF	ENST00000555259.5_1_14:31112578-31185169:+|nuORF	ENST00000555259.5_1_14:31112578-31185169:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	509.80316162109375	2	509.803914	1017.59328	-1.31	-0.00066782	0.8449	0.00043073	-0.46505	-0.00023708	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.68641	1	11019	11019		21.702	0	1	99460			43288	13644	35795	35818	46741	46741					0.08518233758775295
PMGLFNIDDIE	11	Unmodified	_PMGLFNIDDIE_					0	0	0		tr|A0A7D6ZRQ2|A0A7D6ZRQ2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13105PE=4SV=1	tr|A0A7D6ZRQ2|A0A7D6ZRQ2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13105PE=4SV=1	tr|A0A7D6ZRQ2|A0A7D6ZRQ2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13105PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	632.3576049804688	2	632.299921	1262.58529	2.1448	0.0013562	-3.9007	-0.0024664	-1.7559	-0.0011102	632.2973182859397	118.54	0.47003	118.54	118.3	118.77	0					24	9	3	0	0	0	0.025298	1	13562	13562		56.721	19.562	1	313360			43289	35719	35796	35819	46742	46742					-0.035499900192917266
PMGLVPLL	8	Unmodified	_PMGLVPLL_					0	0	0			REV__tr|A0A7D7A0G0|A0A7D7A0G0_9CLOTSporulationintegralmembraneproteinYtvIOS=ClostridiumintestinaleOX=36845GN=ytvIPE=3SV=1	REV__tr|A0A7D7A0G0|A0A7D7A0G0_9CLOTSporulationintegralmembraneproteinYtvIOS=ClostridiumintestinaleOX=36845GN=ytvIPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.54962158203125	2	420.2566	838.498647	0.14221	5.9766E-05	4.1662	0.0017509	4.3084	0.0018106	420.258072186886	56.385	0.3623	56.385	56.261	56.623	0					12	8	2	0	0	0	0.028476	1	4705	4705		33.493	25.262	1	113630	+		43290	32446	35797	35820	46743	46743					0.07293720007442062
PMGSLFVRMK	10	Unmodified	_PMGSLFVRMK_					0	0	0			REV__nc|ENSG00000072958|Q9BXS5-2|AP1M1	REV__nc|ENSG00000072958|Q9BXS5-2|AP1M1	MULTI-SECPEP	OvCa9_classI_Rep3	3	584.3040161132812	2	583.314654	1164.61476	-2.2305	-0.0013011	3.643	0.002125	1.4125	0.00082392	583.3173958010252	86.656	2.0882	84.479	84.131	86.219	-2.1768					65	40	2	0	0	0	0.026697	1	5200	5200		29.15	0	1	138700	+		43291	16928	35798	35821	46744	46744					0.03903295515806349
PMGVERLWEVM	11	Unmodified	_PMGVERLWEVM_					0	0	0			REV__ENSG00000166266|ENST00000393094|CUL5	REV__ENSG00000166266|ENST00000393094|CUL5	MULTI-MSMS	OvCa9_classI_Rep3	3	449.55718994140625	3	449.558031	1345.65226	1.3811	0.00062087	-3.5442	-0.0015933	-2.1632	-0.00097246	449.55630575222216	120.55	1.5823	119.52	119.22	120.8	-1.0271					84	30	4	0	0	0	0.71321	1	9206	9206		25.126	0.89417	1	202080	+		43292	21171	35799	35822	46745	46745					-0.006736580092137956
PMGVERLWEVM	11	Unmodified	_PMGVERLWEVM_					0	0	0			REV__ENSG00000166266|ENST00000393094|CUL5	REV__ENSG00000166266|ENST00000393094|CUL5	MULTI-MATCH	OvCa9_classI_Rep2	2		3	449.558031	1345.65226	1.1828	0.00053175	-3.0481	-0.0013703	-1.8653	-0.00083857	449.55648136788915	119.68	1.2338	119.51	119.25	120.48	-0.17137	0.012054	-0.00028365	NaN	25.126	74	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82179	+		43293	21171	35799	35822							-0.006736580092137956
PMGVERLWEVM	11	Unmodified	_PMGVERLWEVM_					0	0	0			REV__ENSG00000166266|ENST00000393094|CUL5	REV__ENSG00000166266|ENST00000393094|CUL5	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		3	449.558031	1345.65226	1.3811	0.00062087	-3.5442	-0.0015933	-2.1632	-0.00097246	449.55630575222216	120.55	1.5823	119.52	119.22	120.8	-1.0271	0.025749	-0.0009527	NaN	25.126	84	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202080	+		43294	21171	35799	35822							-0.006736580092137956
PMHWGHVKS	9	Unmodified	_PMHWGHVKS_					0	0	0		tr|A0A553ST25|A0A553ST25_NIACISucrose-6-phosphatehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_04150PE=3SV=1	tr|A0A553ST25|A0A553ST25_NIACISucrose-6-phosphatehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_04150PE=3SV=1	tr|A0A553ST25|A0A553ST25_NIACISucrose-6-phosphatehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_04150PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.8095092773438	2	539.766186	1077.51782	0.91004	0.00049121	3.6985	0.0019963	4.6086	0.0024876	539.7694404303459	124.29	0.31969	124.29	124.1	124.42	0					10	6	2	0	0	0	0.027462	1	14335	14335		24.203	0	1	40035			43295	34450	35800	35823	46746	46746					-0.017839306489349838
PMIEFRVF	8	Unmodified	_PMIEFRVF_					0	0	0		tr|A0A553SRK6|A0A553SRK6_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_01255PE=4SV=1	tr|A0A553SRK6|A0A553SRK6_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_01255PE=4SV=1	tr|A0A553SRK6|A0A553SRK6_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_01255PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.7665405273438	2	519.775688	1037.53682	-0.64828	-0.00033696	-3.6358	-0.0018898	-4.284	-0.0022267	520.2751526467923	77.145	0.31409	74.774	74.505	74.819	-2.3715					6	5	2	0	0	0	0.028476	1	3987	3987		42.474	10.945	1	9037.3			43296	34273	35801	35824	46747	46747					0.01955605922103132
PMIILCAI	8	Unmodified	_PMIILCAI_					0	0	0		tr|A0A7D7A2M8|A0A7D7A2M8_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17790PE=4SV=1	tr|A0A7D7A2M8|A0A7D7A2M8_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17790PE=4SV=1	tr|A0A7D7A2M8|A0A7D7A2M8_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17790PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.76446533203125	2	437.25046	872.486367	0.1015	4.4382E-05	4.3543	0.0019039	4.4558	0.0019483	437.2522099427122	77.731	0.67993	74.914	74.729	75.409	-2.8165					26	13	2	0	0	0	0.028476	1	6215	6215		16.705	6.5202	1	79420			43297	36086	35802	35825	46748	46748					0.04502360272738315
PMIILCAI	8	Unmodified	_PMIILCAI_					0	0	0		tr|A0A7D7A2M8|A0A7D7A2M8_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17790PE=4SV=1	tr|A0A7D7A2M8|A0A7D7A2M8_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17790PE=4SV=1	tr|A0A7D7A2M8|A0A7D7A2M8_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17790PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	437.25046	872.486367	1.9363	0.00084664	10.805	0.0047246	12.742	0.0055712	437.25529464427456	74.564	0.36138	74.564	74.441	74.802	0	-0.19232	0.0051584	NaN	10.185	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208480			43298	36086	35802	35825							0.04502360272738315
PMIILCAI	8	Unmodified	_PMIILCAI_					0	0	0		tr|A0A7D7A2M8|A0A7D7A2M8_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17790PE=4SV=1	tr|A0A7D7A2M8|A0A7D7A2M8_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17790PE=4SV=1	tr|A0A7D7A2M8|A0A7D7A2M8_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17790PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	437.25046	872.486367	0.024318	1.0633E-05	4.0594	0.001775	4.0837	0.0017856	437.2520464840991	76.645	0.93808	74.791	74.361	75.299	-1.854	0.034528	-0.0007409	NaN	10.185	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41658			43299	36086	35802	35825							0.04502360272738315
PMKIMIKKTK	10	Unmodified	_PMKIMIKKTK_					0	0	0			REV__tr|A0A553SR30|A0A553SR30_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_00300PE=4SV=1	REV__tr|A0A553SR30|A0A553SR30_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_00300PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	407.2335205078125	3	406.587262	1216.73996	0.26702	0.00010857	-0.9098	-0.00036991	-0.64278	-0.00026135	406.5868474861813	44.318	1.379	41.282	41.01	42.389	-3.0355					61	26	4	0	0	0	0.026674	1	2219	2219		32.751	7.6245	1	262580	+		43300	30686	35803	35826	46749	46749					0.14025587652190552
PMKIMIKKTK	10	Unmodified	_PMKIMIKKTK_					0	0	0			REV__tr|A0A553SR30|A0A553SR30_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_00300PE=4SV=1	REV__tr|A0A553SR30|A0A553SR30_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_00300PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	406.587262	1216.73996	1.621	0.00065908	-2.0594	-0.00083733	-0.43841	-0.00017825	406.586334678985	43.971	0.84726	41.262	41.054	41.901	-2.7097	-0.010172	-0.0010118	NaN	32.751	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72012	+		43301	30686	35803	35826							0.14025587652190552
PMLAIPFL	8	Unmodified	_PMLAIPFL_					0	0	0		tr|A0A553SQ39|A0A553SQ39_NIACITetratricopeptiderepeatproteinOS=NialliacirculansOX=1397GN=CEQ21_18665PE=4SV=1	tr|A0A553SQ39|A0A553SQ39_NIACITetratricopeptiderepeatproteinOS=NialliacirculansOX=1397GN=CEQ21_18665PE=4SV=1	tr|A0A553SQ39|A0A553SQ39_NIACITetratricopeptiderepeatproteinOS=NialliacirculansOX=1397GN=CEQ21_18665PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	451.26776123046875	2	451.264425	900.514297	3.9229	0.0017703	0.060635	2.7363E-05	3.9835	0.0017976	451.2643761804868	87.919	1.8703	86.488	85.642	87.513	-1.4311					79	37	4	0	0	0	0.64315	1	7693	7693		54.895	0	1	331550			43302	34115	35804	35827	46750	46750					0.0600600652447838
PMLNGQVTL	9	Unmodified	_PMLNGQVTL_					0	0	0			REV__ENST00000282120.6_1_2:85545669-85545816:-|nuORF	REV__ENST00000282120.6_1_2:85545669-85545816:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.28900146484375	2	486.762778	971.511002	0.0864	4.2056E-05	-2.8097	-0.0013676	-2.7233	-0.0013256	486.76092479047946	95.698	0.94331	94.67	94.169	95.113	-1.0281					31	18	2	0	0	0	0.027392	1	8572	8572		73.975	0	1	38628	+		43303	24120	35805	35828	46751	46751					0.024107116798290917
PMLQRDFIT	9	Unmodified	_PMLQRDFIT_					0	0	0		BTRC|p.L271Ifs*16|1|0.16|ENSG00000166167|chr10:101531303-101531304|-/ATAGATGAATT|frameshift_variant;nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC;nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11	BTRC|p.L271Ifs*16|1|0.16|ENSG00000166167|chr10:101531303-101531304|-/ATAGATGAATT|frameshift_variant;nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.82666015625	2	560.794609	1119.57467	0.37421	0.00020986	0.24029	0.00013475	0.6145	0.00034461	560.7948187175471	117.79	0.73602	116.44	116.21	116.94	-1.3444					15	13	2	0	0	0	0.027462	1	11028	11028		44.117	14.967	1	33116			43304	164;1480	35806	35829	46752	46752					0.019660721168975215
PMLQRDFIT	9	Unmodified	_PMLQRDFIT_					0	0	0		BTRC|p.L271Ifs*16|1|0.16|ENSG00000166167|chr10:101531303-101531304|-/ATAGATGAATT|frameshift_variant;nc|ENSG00000166167|Q9Y297-2|BTRC;ENSG00000166167|ENST00000370187|BTRC;nc|ENSG00000072803|Q9UKB1-2|FBXW11;nc|ENSG00000072803|Q9UKB1-3|FBXW11;nc|ENSG00000072803|Q9UKB1|FBXW11;ENSG00000072803|ENST00000517395|FBXW11	BTRC|p.L271Ifs*16|1|0.16|ENSG00000166167|chr10:101531303-101531304|-/ATAGATGAATT|frameshift_variant;nc|ENSG00000072803|Q9UKB1-2|FBXW11	nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MATCH	OvCa9_classI_Rep2	2		2	560.794609	1119.57467	-0.45814	-0.00025692	1.3513	0.00075782	0.8932	0.0005009	560.7952534626309	116.57	0.49508	116.44	116.22	116.72	-0.12868	-0.0013844	0.00074066	NaN	35.618	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18213			43305	164;1480	35806	35829							0.019660721168975215
PMLRLFANK	9	Unmodified	_PMLRLFANK_					0	0	0			REV__tr|A0A7D6W0Y3|A0A7D6W0Y3_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=celBPE=4SV=1	REV__tr|A0A7D6W0Y3|A0A7D6W0Y3_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=celBPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.864501953125	2	545.315512	1088.61647	0.77007	0.00041993	1.2882	0.0007025	2.0583	0.0011224	545.3159458313047	139.53	2.8445	138.03	137.04	139.89	-1.4952					125	55	3	0	0	0	0.027462	1	13788	13788		47.916	8.6628	1	48177	+		43306	31868	35807	35830	46753	46753					0.07570672596102668
PMNVLKNVL	9	Unmodified	_PMNVLKNVL_					0	0	0			REV__ENSG00000166415|ENST00000360509|WDR72	REV__ENSG00000166415|ENST00000360509|WDR72	MULTI-SECPEP	OvCa9_classI_Rep2	2	514.7776489257812	2	514.30207	1026.58959	0.25315	0.0001302	-3.9165	-0.0020143	-3.6634	-0.0018841	514.299928793191	72.519	1.2518	70.119	69.697	70.949	-2.3999					40	23	3	0	0	0	0.027462	1	5953	5953		38.806	0	1	51569	+		43307	21190	35808	35831	46754	46754					0.07735563984920191
PMPGPATR	8	Unmodified	_PMPGPATR_					0	0	0			REV__ENST00000605386.1_1_12:90103555-90103792:+|nuORF	REV__ENST00000605386.1_1_12:90103555-90103792:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	413.7149658203125	2	413.71563	825.416708	0.2252	9.3167E-05	-4.3933	-0.0018176	-4.1681	-0.0017244	413.71364610594253	65.454	0.71752	65.454	65.15	65.867	0					34	17	3	0	0	0	0.7043	1	6007	6007		42.474	0	1	1376200	+		43308	28065	35809	35832	46755	46755					-0.002983823516501616
PMPGPPQN	8	Unmodified	_PMPGPPQN_					0	0	0			REV__nc|ENSG00000186174|Q86UU0-3|BCL9L	REV__nc|ENSG00000186174|Q86UU0-3|BCL9L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	420.19525146484375	2	419.199813	836.385073	-1.445	-0.00060574	-1.3886	-0.00058211	-2.8336	-0.0011878	419.19820683876674	120.38	0.47042	119.04	118.82	119.29	-1.3444					14	8	2	0	0	0	0.028476	1	11330	11330		21.702	0	1	11656	+		43309	22562	35810	35833	46756	46756					-0.03966375105608222
PMPPDLSPPSN	11	Unmodified	_PMPPDLSPPSN_					0	0	0			REV__ENST00000428457.1_1_7:47317609-47317696:-|nuORF	REV__ENST00000428457.1_1_7:47317609-47317696:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	575.8178100585938	2	576.273706	1150.53286	-0.12847	-7.4032E-05	-3.1633	-0.0018229	-3.2918	-0.001897	576.2720417641084	92.323	0.94264	91.155	90.814	91.756	-1.168					44	17	4	0	0	0	0.025332	1	8177	8177		33.922	0	1	61073	+		43310	25690	35811	35834	46757	46757					-0.03638528362239413
PMPQFIEDI	9	Oxidation (M)	_PM(Oxidation (M))PQFIEDI_		PM(1)PQFIEDI		PM(57)PQFIEDI	0	0	1		tr|A0A7D6VRF8|A0A7D6VRF8_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05350PE=4SV=1	tr|A0A7D6VRF8|A0A7D6VRF8_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05350PE=4SV=1	tr|A0A7D6VRF8|A0A7D6VRF8_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05350PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	553.2644653320312	2	553.26535	1104.51615	0.96293	0.00053276	-2.0421	-0.0011298	-1.0792	-0.00059706	553.2642988046754	154.05	1.1918	154.05	153.69	154.88	0					30	23	3	0	0	0	0.35444	1	18053	18053		56.721	13.857	1	75795			43311	34927	35812	35835	46758	46758		768			-0.03193029248222956
PMPRPVRLL	9	Unmodified	_PMPRPVRLL_					0	0	0			REV__ENSG00000189350|ENST00000379558|TOGARAM2	REV__ENSG00000189350|ENST00000379558|TOGARAM2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.8063354492188	2	539.831329	1077.6481	0.64148	0.00034629	-4.0419	-0.0021819	-3.4004	-0.0018356	539.8290103279718	85.232	0.93122	82.586	82.312	83.243	-2.6463					27	18	2	0	0	0	0.027441	1	7160	7160		37.159	9.2769	1	69889	+		43312	22773	35813	35836	46759	46759					0.11238665350060728
PMPRPVRLL	9	Unmodified	_PMPRPVRLL_					0	0	0			REV__ENSG00000189350|ENST00000379558|TOGARAM2	REV__ENSG00000189350|ENST00000379558|TOGARAM2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	539.831329	1077.6481	-1.5666	-0.00084571	-2.7442	-0.0014814	-4.3108	-0.0023271	539.8293848188235	84.003	1.6237	82.457	82.072	83.696	-1.5462	-0.16083	0.0013528	NaN	37.159	85	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84223	+		43313	22773	35813	35836							0.11238665350060728
PMQIGAKP	8	Unmodified	_PMQIGAKP_					0	0	0			REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|168|3|sense	REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|168|3|sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	421.7535095214844	2	421.233656	840.452759	-0.41915	-0.00017656	-3.6238	-0.0015264	-4.0429	-0.001703	421.2327896795142	86.632	0.50375	84.456	84.28	84.784	-2.1768					13	9	3	0	0	0	0.028476	1	5185	5185		20.482	0	1	17658	+		43314	28199	35814	35837	46760	46760					0.02615074825200736
PMQMPKPSR	9	Unmodified	_PMQMPKPSR_					0	0	0		nc|ENSG00000091073|Q86UW9-2|DTX2;ENSG00000091073|ENST00000430490|DTX2	nc|ENSG00000091073|Q86UW9-2|DTX2	nc|ENSG00000091073|Q86UW9-2|DTX2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.3057250976562	2	536.275529	1070.53651	-0.91538	-0.00049089	3.6684	0.0019673	2.7531	0.0014764	536.2773800553634	102.5	0.78892	100.3	100.04	100.83	-2.1994					24	14	2	0	0	0	0.027462	1	9218	9218		37.159	8.0096	1	83146			43315	1860	35815	35838	46761	46761					0.004058629305973227
PMQPTKLHS	9	Unmodified	_PMQPTKLHS_					0	0	0			REV__nc|ENSG00000163564|Q6K0P9-3|PYHIN1	REV__nc|ENSG00000163564|Q6K0P9-3|PYHIN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.7738647460938	2	519.773677	1037.5328	0.17431	9.0599E-05	0.40447	0.00021023	0.57878	0.00030083	519.7738144415306	128.63	2.6649	127.17	126.07	128.73	-1.4565					98	52	4	0	0	0	0.50149	1	12311	12311		42.396	3.59	1	448430	+		43316	20854	35816	35839	46762	46762					0.015535164283846825
PMRDQIIR	8	Unmodified	_PMRDQIIR_					0	0	0		ENSG00000181467|ENST00000323534|RAP2B;ENSG00000125249|ENST00000245304|RAP2A	ENSG00000181467|ENST00000323534|RAP2B	ENSG00000181467|ENST00000323534|RAP2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.740234375	2	514.787118	1027.55968	0.30543	0.00015723	4.2339	0.0021796	4.5393	0.0023368	514.789520406375	72.394	1.1348	72.394	71.589	72.723	0					33	27	2	0	0	0	0.028476	1	6930	6930		57.811	0	1	865490			43317	3693	35817	35840	46763	46763					0.047006250395725147
PMRGRLPLLA	10	Unmodified	_PMRGRLPLLA_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	OvCa9_classI_Rep2	2	562.3422241210938	2	562.342061	1122.66957	-1.142	-0.00064221	3.1807	0.0017886	2.0387	0.0011464	562.3438081477608	141.84	4.7959	141.62	140.24	145.03	-0.22697					133	96	2	0	0	0	0.75594	1	14230	14230		24.203	7.7296	1	113870			43318	7740	35818	35841	46764	46764					0.11314050378791762
PMRIFGSFC	9	Unmodified	_PMRIFGSFC_					0	0	0			REV__ENST00000357947.3_1_10:98130057-98133559:-|nuORF	REV__ENST00000357947.3_1_10:98130057-98133559:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.2863159179688	2	529.251523	1056.48849	-0.026429	-1.3987E-05	-0.42442	-0.00022463	-0.45085	-0.00023861	529.2504773787513	68.294	0.14701	64.803	64.72	64.867	-3.4902					4	2	2	0	0	0	0.027462	1	5061	5061		24.203	12.692	1	10860	+		43319	24791	35819	35842	46765	46765					-0.03749210989440144
PMSLIGSIF	9	Unmodified	_PMSLIGSIF_					0	0	0		tr|A0A7D6ZYU8|A0A7D6ZYU8_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_03855PE=4SV=1	tr|A0A7D6ZYU8|A0A7D6ZYU8_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_03855PE=4SV=1	tr|A0A7D6ZYU8|A0A7D6ZYU8_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_03855PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	482.2617492675781	2	482.762246	963.50994	-0.8126	-0.00039229	-3.8002	-0.0018346	-4.6128	-0.0022269	482.760190086029	57.624	1.7466	54.832	54.178	55.925	-2.792					61	34	3	0	0	0	0.027433	1	4062	4062		47.916	10.756	1	166990			43320	35932	35820	35843	46766	46766					0.026724973109367056
PMTREEFL	8	Unmodified	_PMTREEFL_					0	0	0		nc|ENSG00000141933|Q6ZTW0-2|TPGS1;ENSG00000141933|ENST00000359315|TPGS1	nc|ENSG00000141933|Q6ZTW0-2|TPGS1	nc|ENSG00000141933|Q6ZTW0-2|TPGS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.3016357421875	2	511.75241	1021.49027	2.0447	0.0010464	0.33307	0.00017045	2.3778	0.0012168	511.75243761995966	102.91	0.58667	102.91	102.68	103.26	0					22	13	2	0	0	0	0.028476	1	11467	11467		32.812	7.3622	1	652800			43321	4946	35821	35844	46767	46767					-0.01961878699830777
PMVDWWPPFHW	11	Unmodified	_PMVDWWPPFHW_					0	0	0			REV__ENST00000426528.5_1_X:102139368-102152590:+|nuORF	REV__ENST00000426528.5_1_X:102139368-102152590:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	499.8962097167969	3	499.897264	1496.66996	-0.43058	-0.00021525	-2.1525	-0.001076	-2.5831	-0.0012913	499.89630793057773	73.49	1.7326	71.003	70.727	72.459	-2.4873					100	34	5	0	0	0	0.71321	1	3585	3585		25.126	0.058206	1	334220	+		43322	25665	35822	35845	46768	46768					-0.058505746920445745
PMVKEVGLALR	11	Unmodified	_PMVKEVGLALR_					0	0	0		nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2;nc|ENSG00000169398|Q05397-6|PTK2;TRAPPC9-PTK2|2|fusion;TRAPPC9-PTK2|1|fusion;TRAPPC9-PTK2|4|fusion;TRAPPC9-PTK2|3|fusion;nc|ENSG00000169398|Q05397-2|PTK2	nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397-2|PTK2	nc|ENSG00000169398|Q05397-2|PTK2	MULTI-MSMS	OvCa99_classI_Rep5	1	404.9118347167969	3	404.909281	1211.70601	0.92597	0.00037493	2.2292	0.00090264	3.1552	0.0012776	404.91020096944607	54.11	1.3734	54.11	53.733	55.107	0					83	32	4	0	0	0	0.50761	1	4361	4361		54.343	5.7418	1	15759000			43323	7005;15172	35823	35846	46769	46769					0.1086288248479832
PMVKEVGLALR	11	Unmodified	_PMVKEVGLALR_					0	0	0		nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2;nc|ENSG00000169398|Q05397-6|PTK2;TRAPPC9-PTK2|2|fusion;TRAPPC9-PTK2|1|fusion;TRAPPC9-PTK2|4|fusion;TRAPPC9-PTK2|3|fusion;nc|ENSG00000169398|Q05397-2|PTK2	nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397-2|PTK2	nc|ENSG00000169398|Q05397-2|PTK2	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	404.909281	1211.70601	1.6852	0.00068235	0.99611	0.00040333	2.6813	0.0010857	404.91022597022607	57.296	0.5095	53.951	53.628	54.138	-3.3449	-0.079463	-0.0014884	NaN	54.343	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14020			43324	7005;15172	35823	35846							0.1086288248479832
PMVKVVEVNM	10	2 Oxidation (M)	_PM(Oxidation (M))VKVVEVNM(Oxidation (M))_		PM(1)VKVVEVNM(1)		PM(48)VKVVEVNM(48)	0	0	2			REV__nc|ENSG00000196263|Q9BX82-2|ZNF471	REV__nc|ENSG00000196263|Q9BX82-2|ZNF471	MSMS	OvCa99_classI_Rep5	1	589.301513671875	2	589.30141	1176.58827	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.13	1	143.13	142.63	143.63	0								0	0	0	0.15238	1	16726	16726		47.657	8.4045	1		+		43325	22806	35824	35847	46770	46770		528;529			0.007035618338704808
PMVRATWLI	9	Unmodified	_PMVRATWLI_					0	0	0		nc|ENSG00000144893|Q86YW9-2|MED12L;nc|ENSG00000144893|Q86YW9-3|MED12L;MED12L|p.I728Tfs*21|1|0.06|ENSG00000144893|chr3:151350095-151350096|-/CATGTGAAGTACTCCAGGTCAAACATTGGAC|frameshift_variant;MED12L|p.R1007Vfs*12|1|0.32|ENSG00000144893|chr3:151365144-151365145|-/GTCTG|frameshift_variant;nc|ENSG00000144893|Q86YW9-4|MED12L;nc|ENSG00000144893|Q86YW9|MED12L;ENSG00000144893|ENST00000687756|MED12L	nc|ENSG00000144893|Q86YW9-2|MED12L	nc|ENSG00000144893|Q86YW9-2|MED12L	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7722778320312	2	543.810062	1085.60557	0.60056	0.00032659	1.3099	0.00071234	1.9105	0.0010389	544.3111577615017	159.93	0.39461	159.93	159.66	160.06	0					9	7	2	0	0	0	0.027462	1	18741	18741		18.324	4.8704	1	13340			43326	5191	35825	35848	46771	46771					0.06619270221835905
PMWAEIDFKRY	11	Unmodified	_PMWAEIDFKRY_					0	0	0			REV__ENSG00000104835|ENST00000221431|SARS2	REV__ENSG00000104835|ENST00000221431|SARS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.3088684082031	3	485.907829	1454.70166	-0.14738	-7.1612E-05	0.97213	0.00047237	0.82475	0.00040075	485.90800919204077	30.556	0.49744	30.556	30.334	30.831	0					13	9	2	0	0	0	0.026033	1	1180	1180		35.178	18.011	1	53378	+		43327	17684	35826	35849	46772	46772					-0.007506267287453738
PMWGTVLIV	9	Unmodified	_PMWGTVLIV_					0	0	0			REV__nc|ENSG00000156113|Q12791-2|KCNMA1	REV__nc|ENSG00000156113|Q12791-2|KCNMA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7765808105469	2	508.285889	1014.55722	0.55114	0.00028014	3.185	0.0016189	3.7362	0.001899	508.2875353597298	81.221	0.74928	81.221	80.744	81.493	0					48	17	4	0	0	0	0.027462	1	8327	8327		26.796	1.222	1	1252800	+		43328	28945	35827	35850	46773	46773					0.050527765819310844
PMYFFLSI	8	Unmodified	_PMYFFLSI_					0	0	0		ENSG00000173679|ENST00000309623|OR1L1;ENSG00000171481|ENST00000304820|OR1L3;nc|ENSG00000173679|Q8NH94|OR1L1	ENSG00000173679|ENST00000309623|OR1L1	ENSG00000173679|ENST00000309623|OR1L1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.2418518066406	2	509.259339	1016.50413	-0.25307	-0.00012888	1.2929	0.00065843	1.0399	0.00052955	509.25847724761746	59.14	0.25138	55.748	55.553	55.805	-3.392					6	4	2	0	0	0	0.028476	1	3916	3916		26.796	0	1	7673.6			43329	7200	35828	35851	46774	46774					-0.003466012007379504
PMYLIRIF	8	Unmodified	_PMYLIRIF_					0	0	0		tr|A0A553STH4|A0A553STH4_NIACIMembranetransportproteinOS=NialliacirculansOX=1397GN=CEQ21_05050PE=4SV=1	tr|A0A553STH4|A0A553STH4_NIACIMembranetransportproteinOS=NialliacirculansOX=1397GN=CEQ21_05050PE=4SV=1	tr|A0A553STH4|A0A553STH4_NIACIMembranetransportproteinOS=NialliacirculansOX=1397GN=CEQ21_05050PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.7667236328125	2	526.801706	1051.58886	-1.3164	-0.00069346	4.0661	0.002142	2.7498	0.0014486	526.8032512857388	91.916	1.5659	89.374	88.912	90.478	-2.5425					62	30	4	0	0	0	0.028476	1	8067	8067		29.842	0	1	191550			43330	34488	35829	35852	46775	46775					0.06512769335859048
PNAQKPFAH	9	Unmodified	_PNAQKPFAH_					0	0	0		ZNF174|p.W337Tfs*8|1|0.19|ENSG00000103343|chr16:3408703-3408704|-/ACAAAAAA|frameshift_variant;ENSG00000103343|ENST00000268655|ZNF174	ZNF174|p.W337Tfs*8|1|0.19|ENSG00000103343|chr16:3408703-3408704|-/ACAAAAAA|frameshift_variant	ZNF174|p.W337Tfs*8|1|0.19|ENSG00000103343|chr16:3408703-3408704|-/ACAAAAAA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	505.2637023925781	2	505.264333	1008.51411	0.8595	0.00043427	-0.94134	-0.00047563	-0.081844	-4.1353E-05	505.26375901484937	29.367	1.0512	26.658	26.456	27.508	-2.7097					36	21	2	0	0	0	0.52083	1	722	722		40.573	1.5511	1	167190			43331	2310	35830	35853	46776	46776					0.010197228488550536
PNASIVRR	8	Unmodified	_PNASIVRR_					0	0	0			REV__AFAP1-KCNIP4|1|fusion	REV__AFAP1-KCNIP4|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	456.7719421386719	2	456.772326	911.530098	-0.55209	-0.00025218	0.40157	0.00018343	-0.15052	-6.8753E-05	456.77237766888294	142.31	1.8774	142.08	141.37	143.25	-0.22697					97	37	4	0	0	0	0.7594	1	14314	14314		21.96	3.6355	1	225920	+		43332	15575	35831	35854	46777	46777					0.07079429085752054
PNCRHVKR	8	Unmodified	_PNCRHVKR_					0	0	0		ENST00000359039.4_1_9:21333248-21333287:-|nuORF	ENST00000359039.4_1_9:21333248-21333287:-|nuORF	ENST00000359039.4_1_9:21333248-21333287:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.3349304199219	2	505.277252	1008.53995	-1.6204	-0.00081874	-4.2593	-0.0021521	-5.8797	-0.0029709	505.2745926241228	52.196	0.74414	49.383	48.897	49.642	-2.8129					21	14	2	0	0	0	0.028476	1	3493	3493		24.203	2.2429	1	24984			43333	10748	35832	35855	46778	46778					0.03602293819483293
PNCRHVKR	8	Unmodified	_PNCRHVKR_					0	0	0		ENST00000359039.4_1_9:21333248-21333287:-|nuORF	ENST00000359039.4_1_9:21333248-21333287:-|nuORF	ENST00000359039.4_1_9:21333248-21333287:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	505.277252	1008.53995	-0.78257	-0.00039542	-3.7099	-0.0018745	-4.4925	-0.00227	505.2748059531233	52.347	0.6591	49.139	48.943	49.602	-3.208	-0.12201	0.00023957	NaN	24.203	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54168			43334	10748	35832	35855							0.03602293819483293
PNDAILLNPSD	11	Unmodified	_PNDAILLNPSD_					0	0	0			REV__nc|ENSG00000183878|O14607-5|UTY	REV__nc|ENSG00000183878|O14607-5|UTY	MULTI-SECPEP	OvCa9_classI_Rep4_	4	584.3572998046875	2	584.79586	1167.57717	-0.3065	-0.00017924	0.057933	3.3879E-05	-0.24857	-0.00014536	584.79585512847	141.99	0.89532	140.52	140.29	141.18	-1.4627					28	16	2	0	0	0	0.025445	1	13861	13861		42.338	0.91146	1	72253	+		43335	22393	35833	35856	46779	46779					8.199055582736037E-05
PNDAILLNPSD	11	Unmodified	_PNDAILLNPSD_					0	0	0			REV__nc|ENSG00000183878|O14607-5|UTY	REV__nc|ENSG00000183878|O14607-5|UTY	MULTI-MATCH	OvCa9_classI_Rep3	3		2	584.79586	1167.57717	-3.6854	-0.0021552	3.1665	0.0018518	-0.5189	-0.00030345	584.7975875711156	141.57	0.9382	140.56	140.04	140.98	-1.0106	-0.044387	0.0026518	NaN	42.338	39	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32676	+		43336	22393	35833	35856							8.199055582736037E-05
PNDSAPRFK	9	Unmodified	_PNDSAPRFK_					0	0	0			REV__ENST00000493417.5_1_9:132839594-132891041:+|nuORF	REV__ENST00000493417.5_1_9:132839594-132891041:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	516.2847290039062	2	516.267073	1030.51959	0.60176	0.00031067	-0.7666	-0.00039577	-0.16484	-8.5101E-05	516.2639864435747	82.406	0.78266	80.807	80.436	81.219	-1.5988					22	14	2	0	0	0	0.027462	1	7015	7015		25.574	5.0922	1	25301	+		43337	20106	35834	35857	46780	46780					0.005554016406676965
PNDSAPRFK	9	Unmodified	_PNDSAPRFK_					0	0	0			REV__ENST00000493417.5_1_9:132839594-132891041:+|nuORF	REV__ENST00000493417.5_1_9:132839594-132891041:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	516.267073	1030.51959	-0.35319	-0.00018234	1.2761	0.00065883	0.92295	0.00047649	516.7707759302673	83.118	0.65027	80.822	80.381	81.032	-2.2963	0.0076346	0.0010546	NaN	19.104	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39630	+		43338	20106	35834	35857							0.005554016406676965
PNDYNKLVL	9	Unmodified	_PNDYNKLVL_					0	0	0		ARID2|p.S1616Rfs*20|1|0.08|ENSG00000189079|chr12:45860874-45860875|-/ACACAAATACTTAACCATTGTGTTACGGT|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2;ARID2|p.C180*|1|0.16|ENSG00000189079|chr12:45817788-45817804|ATGCACTCTCCTATCAA/-|frameshift_variant	ARID2|p.S1616Rfs*20|1|0.08|ENSG00000189079|chr12:45860874-45860875|-/ACACAAATACTTAACCATTGTGTTACGGT|frameshift_variant	ARID2|p.S1616Rfs*20|1|0.08|ENSG00000189079|chr12:45860874-45860875|-/ACACAAATACTTAACCATTGTGTTACGGT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	538.2951049804688	2	538.292756	1074.57096	2.0151	0.0010847	3.8584	0.0020769	5.8735	0.0031617	538.2947261262416	133.95	0.75842	133.95	133.58	134.34	0					45	15	4	0	0	0	0.37135	1	15564	15564		54.776	5.3348	1	996790			43339	115	35835	35858	46781	46781					0.036657256147236694
PNEAVSVVIN	10	Unmodified	_PNEAVSVVIN_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.8045654296875	2	521.282389	1040.55022	-1.8637	-0.00097153	1.5553	0.00081074	-0.30846	-0.0001608	521.2829082750472	104.5	0.42265	104.5	104.24	104.66	0					17	8	3	0	0	0	0.026714	1	11723	11723		35.152	0	1	252030			43340	3125	35836	35859	46782	46782					0.03157135235073838
PNEDDGCVLD	10	Unmodified	_PNEDDGCVLD_					0	0	0			REV__ENSG00000168116|ENST00000370733|KIAA1586	REV__ENSG00000168116|ENST00000370733|KIAA1586	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.8631591796875	2	538.713679	1075.4128	2.6989	0.0014539	2.5755	0.0013875	5.2744	0.0028414	538.7155367596214	133.6	0.19427	132.07	132	132.19	-1.5257					5	3	2	0	0	0	0.027198	1	12893	12893		19.997	13.261	1	7099.5	+		43341	21347	35837	35860	46783	46783					-0.12188561426683009
PNEKAGCGGK	10	Carbamidomethyl (C)	_PNEKAGC(Carbamidomethyl (C))GGK_	PNEKAGC(1)GGK		PNEKAGC(60)GGK		0	1	0			REV__ENST00000255432.11_1_1:202172891-202172966:+|nuORF	REV__ENST00000255432.11_1_1:202172891-202172966:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.24139404296875	2	509.242741	1016.47093	-0.091501	-4.6596E-05	-4.3545	-0.0022175	-4.446	-0.0022641	509.24024870249735	61.537	2.1867	58.08	57.216	59.403	-3.4577					77	44	2	0	0	0	0.45822	1	4220	4220		60.118	7.1816	1	1687200	+		43342	23886	35838	35861	46784	46784	281				-0.036648349907295596
PNELNNLI	8	Unmodified	_PNELNNLI_					0	0	0		nc|ENSG00000168405|Q9Y471|CMAHP;nc|ENSG00000168405|Q9Y471-4|CMAHP;ENST00000490939.1_1_6:25087010-25108891:-|nuORF	nc|ENSG00000168405|Q9Y471|CMAHP	nc|ENSG00000168405|Q9Y471|CMAHP	MULTI-SECPEP	OvCa9_classI_Rep2	2	463.3006591796875	2	463.750724	925.486896	-0.4784	-0.00022186	0.42539	0.00019728	-0.053008	-2.4582E-05	463.7508920965434	83.423	1.6362	81.825	81.415	83.051	-1.5988					59	32	3	0	0	0	0.028476	1	7278	7278		45.952	5.3793	1	60860			43343	15166	35839	35862	46785	46785					0.021171945178025453
PNENPLAK	8	Unmodified	_PNENPLAK_					0	0	0		tr|A0A553SM28|A0A553SM28_NIACIGlutamate5-kinaseOS=NialliacirculansOX=1397GN=proBPE=3SV=1	tr|A0A553SM28|A0A553SM28_NIACIGlutamate5-kinaseOS=NialliacirculansOX=1397GN=proBPE=3SV=1	tr|A0A553SM28|A0A553SM28_NIACIGlutamate5-kinaseOS=NialliacirculansOX=1397GN=proBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.29681396484375	2	441.737617	881.460681	0.86605	0.00038257	-0.62188	-0.00027471	0.24417	0.00010786	441.7374069947601	67.945	0.82881	64.454	64.235	65.064	-3.4902					23	16	2	0	0	0	0.028476	1	5057	5057		30.504	0	1	60270			43344	33789	35840	35863	46786	46786					0.015209253463240202
PNENPLAK	8	Unmodified	_PNENPLAK_					0	0	0		tr|A0A553SM28|A0A553SM28_NIACIGlutamate5-kinaseOS=NialliacirculansOX=1397GN=proBPE=3SV=1	tr|A0A553SM28|A0A553SM28_NIACIGlutamate5-kinaseOS=NialliacirculansOX=1397GN=proBPE=3SV=1	tr|A0A553SM28|A0A553SM28_NIACIGlutamate5-kinaseOS=NialliacirculansOX=1397GN=proBPE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	441.737617	881.460681	0.57589	0.00025439	-0.24668	-0.00010897	0.32921	0.00014542	441.7373972255376	64.396	0.65738	64.396	63.974	64.631	0	-0.086297	0.00022219	NaN	35.618	27	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	906800			43345	33789	35840	35863							0.015209253463240202
PNENPLAK	8	Unmodified	_PNENPLAK_					0	0	0		tr|A0A553SM28|A0A553SM28_NIACIGlutamate5-kinaseOS=NialliacirculansOX=1397GN=proBPE=3SV=1	tr|A0A553SM28|A0A553SM28_NIACIGlutamate5-kinaseOS=NialliacirculansOX=1397GN=proBPE=3SV=1	tr|A0A553SM28|A0A553SM28_NIACIGlutamate5-kinaseOS=NialliacirculansOX=1397GN=proBPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	441.737617	881.460681	0.98465	0.00043496	-1.1567	-0.00051096	-0.17206	-7.6005E-05	441.7372133396202	67.257	0.69328	64.596	64.298	64.991	-2.661	0.11404	-0.0005818	NaN	35.618	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16730			43346	33789	35840	35863							0.015209253463240202
PNETARGLV	9	Unmodified	_PNETARGLV_					0	0	0		ENST00000607864.1_1_13:79980819-79980888:+|nuORF	ENST00000607864.1_1_13:79980819-79980888:+|nuORF	ENST00000607864.1_1_13:79980819-79980888:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.2828063964844	2	478.761623	955.508694	0.46857	0.00022433	-1.4097	-0.00067491	-0.94113	-0.00045058	478.7605686607886	60.467	0.79472	57.037	56.749	57.544	-3.43					25	15	2	0	0	0	0.027462	1	4103	4103		27.882	4.3595	1	88739			43347	14289	35841	35864	46787	46787					0.029159992663721823
PNETARGLV	9	Unmodified	_PNETARGLV_					0	0	0		ENST00000607864.1_1_13:79980819-79980888:+|nuORF	ENST00000607864.1_1_13:79980819-79980888:+|nuORF	ENST00000607864.1_1_13:79980819-79980888:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	478.761623	955.508694	-0.75587	-0.00036188	-0.30008	-0.00014367	-1.0559	-0.00050555	478.7614142673802	60.052	0.46569	57.282	56.983	57.448	-2.7702	0.12261	0.00046967	NaN	25.574	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18727			43348	14289	35841	35864							0.029159992663721823
PNFEQEQVK	9	Unmodified	_PNFEQEQVK_					0	0	0			REV__ENST00000561883.1_1_16:89920747-89922226:+|nuORF	REV__ENST00000561883.1_1_16:89920747-89922226:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	560.3284912109375	2	559.77747	1117.54039	0.064693	3.6214E-05	-2.9156	-0.0016321	-2.8509	-0.0015959	559.7759616589241	73.962	0.68402	71.991	71.64	72.324	-1.9711					16	12	2	0	0	0	0.027462	1	6019	6019		27.882	4.3595	1	10571	+		43349	23197	35842	35865	46788	46788					-0.013680527703400003
PNFIKLLIRQ	10	Unmodified	_PNFIKLLIRQ_					0	0	0			REV__nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	REV__nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	MULTI-SECPEP	OvCa9_classI_Rep2	2	415.2116394042969	3	414.595802	1240.76558	1.3656	0.00056616	-4.3364	-0.0017979	-2.9708	-0.0012317	414.59393508334574	43.098	1.1375	40.388	39.966	41.104	-2.7097					41	22	3	0	0	0	0.027233	1	2411	2411		20.837	0	1	26343	+		43350	22028	35843	35866	46789	46789					0.15482521490503132
PNFNKLIF	8	Unmodified	_PNFNKLIF_					0	0	0			REV__ENST00000467733.1_1_3:156262080-156272878:-|nuORF	REV__ENST00000467733.1_1_3:156262080-156272878:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.2614440917969	2	496.781828	991.549102	-0.8346	-0.00041462	0.71959	0.00035748	-0.11501	-5.7137E-05	496.7822375189548	65.504	0.4808	65.504	65.309	65.79	0					15	11	2	0	0	0	0.028476	1	6029	6029		13.775	0	1	249410	+		43351	18204	35844	35867	46790	46790					0.05298965656800192
PNGAKDCLKAI	11	Unmodified	_PNGAKDCLKAI_					0	0	0		ENSG00000115145|ENST00000263904|STAM2;ENST00000465460.5_1_2:153001287-153006696:-|nuORF;nc|ENSG00000115145|O75886-2|STAM2;ENST00000463854.5_1_2:152988626-153032156:-|nuORF;ENST00000482997.5_1_2:152982712-153032156:-|nuORF	ENSG00000115145|ENST00000263904|STAM2	ENSG00000115145|ENST00000263904|STAM2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.7838745117188	2	565.305341	1128.59613	0.10927	6.1774E-05	-4.0799	-0.0023064	-3.9706	-0.0022446	565.303108209161	41.755	0.67094	38.775	38.593	39.264	-2.9804					17	12	2	0	0	0	0.02557	1	1943	1943		39.253	3.6345	1	42612			43352	3064	35845	35868	46791	46791					0.03697457145631233
PNGCCRVRY	9	Unmodified	_PNGCCRVRY_					0	0	0			REV__nc|ENSG00000152332|Q8TAS1-2|UHMK1	REV__nc|ENSG00000152332|Q8TAS1-2|UHMK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.8304443359375	2	534.247303	1066.48005	-1.4391	-0.00076884	1.1068	0.00059131	-0.33228	-0.00017752	534.2477883147669	55.987	0.5087	52.693	52.311	52.819	-3.2944					14	9	2	0	0	0	0.027456	1	3547	3547		38.806	3.1879	1	35828	+		43353	20281	35846	35869	46792	46792					-0.05052764906054108
PNGELDIQTL	10	Unmodified	_PNGELDIQTL_					0	0	0			REV__ENSG00000179542|ENST00000356928|SLITRK4	REV__ENSG00000179542|ENST00000356928|SLITRK4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.3040161132812	2	550.285128	1098.5557	-0.41234	-0.0002269	3.617	0.0019904	3.2046	0.0017635	550.2871195285288	63.654	0.42923	60.179	59.964	60.393	-3.475					12	8	2	0	0	0	0.027632	1	4495	4495		87.696	0	1	122920	+		43354	22128	35847	35870	46793	46793					0.01036814026861066
PNGGGGGP	8	Unmodified	_PNGGGGGP_					0	0	0		nc|ENSG00000182087|Q4ZIN3-2|TMEM259;ENSG00000182087|ENST00000356663|TMEM259	nc|ENSG00000182087|Q4ZIN3-2|TMEM259	nc|ENSG00000182087|Q4ZIN3-2|TMEM259	MULTI-SECPEP	OvCa99_classI_Rep5	1	613.2688598632812	1	612.273615	611.266338	1.5434	0.00094498	-0.10683	-6.5409E-05	1.4366	0.00087957	612.2707645936723	147.08	0.29558	147.08	147.01	147.31	0					8	5	2	0	0	0	0.028476	1	17226	17226		1.619	0	1	17558			43355	7966	35848	35871	46794	46794					-0.054844060189566335
PNGKKLLLL	9	Unmodified	_PNGKKLLLL_					0	0	0		tr|A0A553SUH8|A0A553SUH8_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_07025PE=3SV=1	tr|A0A553SUH8|A0A553SUH8_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_07025PE=3SV=1	tr|A0A553SUH8|A0A553SUH8_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_07025PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.333984375	2	498.334227	994.653902	0.034655	1.727E-05	-0.51496	-0.00025662	-0.48031	-0.00023935	498.3339335091273	123.54	3.2541	123.31	122.99	126.25	-0.23193					175	65	5	0	0	0	0.48324	1	12076	12076		44.117	4.864	1	3004600			43356	34612	35849	35872	46795	46795					0.15636087133384535
PNGKKLLLL	9	Unmodified	_PNGKKLLLL_					0	0	0		tr|A0A553SUH8|A0A553SUH8_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_07025PE=3SV=1	tr|A0A553SUH8|A0A553SUH8_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_07025PE=3SV=1	tr|A0A553SUH8|A0A553SUH8_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_07025PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3338928222656	2	498.334227	994.653902	1.2643	0.00063007	-1.8659	-0.00092985	-0.60157	-0.00029978	498.3332884380841	124.71	3.4398	123.66	123.27	126.71	-1.0519					179	65	5	0	0	0	0.46377	2	9650	9650;9824		45.952	7.1458	1	3929400			43357	34612	35849	35872	46796;46797	46796					0.15636087133384535
PNGKKLLLL	9	Unmodified	_PNGKKLLLL_					0	0	0		tr|A0A553SUH8|A0A553SUH8_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_07025PE=3SV=1	tr|A0A553SUH8|A0A553SUH8_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_07025PE=3SV=1	tr|A0A553SUH8|A0A553SUH8_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_07025PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.333740234375	2	498.334227	994.653902	3.0095	0.0014997	-3.4235	-0.001706	-0.41398	-0.0002063	498.33243610568087	134.14	2.7147	132.61	132.05	134.76	-1.5257					123	54	4	0	0	0	0.50149	1	13027	13027		42.396	1.618	1	1105000			43358	34612	35849	35872	46798	46798					0.15636087133384535
PNGKKLLLL	9	Unmodified	_PNGKKLLLL_					0	0	0		tr|A0A553SUH8|A0A553SUH8_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_07025PE=3SV=1	tr|A0A553SUH8|A0A553SUH8_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_07025PE=3SV=1	tr|A0A553SUH8|A0A553SUH8_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_07025PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3331604003906	2	498.334227	994.653902	1.9139	0.00095378	-2.3002	-0.0011463	-0.38626	-0.00019248	498.33299664402506	137.15	1.8718	135.61	134.84	136.71	-1.5437					88	39	4	0	0	0	0.55588	1	13429	13429		37.159	6.6555	1	198330			43359	34612	35849	35872	46799	46799					0.15636087133384535
PNGLILSH	8	Unmodified	_PNGLILSH_					0	0	0		ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	424.9112243652344	2	425.742702	849.470852	-0.3722	-0.00015846	0.36957	0.00015734	-0.0026355	-1.1221E-06	425.74283704732574	66.43	0.63725	62.94	62.756	63.393	-3.4902					19	12	2	0	0	0	0.028476	1	4813	4813		12.959	0	1	51802			43360	3237	35850	35873	46800	46800					0.04009533071575788
PNIFTVDELTL	11	Unmodified	_PNIFTVDELTL_					0	0	0			REV__ENSG00000101890|ENST00000218006|GUCY2F	REV__ENSG00000101890|ENST00000218006|GUCY2F	MULTI-MSMS	OvCa9_classI_Rep2	2	421.2261047363281	3	421.227333	1260.66017	0.71741	0.00030219	-3.0359	-0.0012788	-2.3185	-0.00097663	421.2260829491031	66.384	2.5241	63.688	63.319	65.843	-2.6958					143	50	5	0	0	0	0.52474	4	5129	5129;5134;5145;5151		51.528	14.02	1	1079000	+		43361	17524	35851	35874	46801;46802;46803;46804	46801					0.040265157835847276
PNIFTVDELTL	11	Unmodified	_PNIFTVDELTL_					0	0	0			REV__ENSG00000101890|ENST00000218006|GUCY2F	REV__ENSG00000101890|ENST00000218006|GUCY2F	MULTI-MSMS	OvCa9_classI_Rep4_	4	421.22747802734375	3	421.227333	1260.66017	0.52716	0.00022205	-2.998	-0.0012628	-2.4708	-0.0010408	421.22605241374913	67.255	1.87	63.765	63.492	65.362	-3.4902					109	37	5	0	0	0	0.50761	1	4928	4928		53.089	10.225	1	1606300	+		43362	17524	35851	35874	46805	46805					0.040265157835847276
PNIIIDPTIGE	11	Unmodified	_PNIIIDPTIGE_					0	0	0			REV__ENSG00000047315|ENST00000314595|POLR2B	REV__ENSG00000047315|ENST00000314595|POLR2B	MULTI-MSMS	OvCa9_classI_Rep4_	4	591.32275390625	2	591.324254	1180.63395	-0.88609	-0.00052397	-1.7784	-0.0010516	-2.6645	-0.0015756	591.3232652193527	42.573	1.5079	39.593	39.312	40.82	-2.9804					98	28	5	0	0	0	0.38665	1	1988	1988		62.107	3.8775	1	1476000	+		43363	16653	35852	35875	46806	46806					0.05086246612086143
PNIKQWIAL	9	Unmodified	_PNIKQWIAL_					0	0	0		nc|ENSG00000113269|Q86XS8-2|RNF130;ENSG00000113269|ENST00000521389|RNF130	nc|ENSG00000113269|Q86XS8-2|RNF130	nc|ENSG00000113269|Q86XS8-2|RNF130	MULTI-MSMS	OvCa9_classI_Rep3	3	541.8187255859375	2	541.821484	1081.62842	0.49266	0.00026694	-4.4188	-0.0023942	-3.9261	-0.0021273	541.8190905602746	72.496	2.1818	69.894	69.571	71.753	-2.6023					94	43	3	0	0	0	0.38529	1	3468	3468		53.351	8.9743	1	1635600			43364	2958	35853	35876	46807	46807					0.09086612610917655
PNIPLPKVSSQ	11	Unmodified	_PNIPLPKVSSQ_					0	0	0			REV__ENSG00000244462|ENST00000374114|RBM12	REV__ENSG00000244462|ENST00000374114|RBM12	MULTI-SECPEP	OvCa9_classI_Rep4_	4	591.322509765625	2	590.340238	1178.66592	-0.99968	-0.00059015	-1.7773	-0.0010492	-2.777	-0.0016394	590.33927443636	42.581	1.0403	39.601	39.312	40.352	-2.9804					46	19	4	0	0	0	0.025457	1	2000	2000		29.17	0	1	121910	+		43365	23477	35854	35877	46808	46808					0.08373659085918916
PNKAIKNI	8	Unmodified	_PNKAIKNI_					0	0	0		tr|A0A7D6ZQS9|A0A7D6ZQS9_9CLOTM55familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01580PE=4SV=1	tr|A0A7D6ZQS9|A0A7D6ZQS9_9CLOTM55familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01580PE=4SV=1	tr|A0A7D6ZQS9|A0A7D6ZQS9_9CLOTM55familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01580PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	449.7588806152344	2	449.279452	896.544351	2.6264	0.00118	-2.5211	-0.0011327	0.10532	4.732E-05	449.2781695021767	72.996	1.9353	70.597	69.54	71.475	-2.3999					84	36	3	0	0	0	0.028476	1	5827	5827		26.796	1.3459	1	197190			43366	35706	35855	35878	46809	46809					0.09194081514044683
PNKAIKNI	8	Unmodified	_PNKAIKNI_					0	0	0		tr|A0A7D6ZQS9|A0A7D6ZQS9_9CLOTM55familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01580PE=4SV=1	tr|A0A7D6ZQS9|A0A7D6ZQS9_9CLOTM55familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01580PE=4SV=1	tr|A0A7D6ZQS9|A0A7D6ZQS9_9CLOTM55familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01580PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	449.279452	896.544351	-0.58607	-0.00026331	0.16085	7.2268E-05	-0.42521	-0.00019104	449.27935372087506	70.229	0.40349	70.229	70.005	70.408	0	-0.18392	0.0018778	NaN	26.796	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231590			43367	35706	35855	35878							0.09194081514044683
PNKIKLITL	9	Unmodified	_PNKIKLITL_					0	0	0		ENSG00000007314|ENST00000435607|SCN4A	ENSG00000007314|ENST00000435607|SCN4A	ENSG00000007314|ENST00000435607|SCN4A	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3464965820312	2	520.347335	1038.68012	1.3364	0.00069541	-1.6775	-0.00087287	-0.34103	-0.00017745	520.346442572037	129.27	2.7244	129.04	128.62	131.35	-0.22697					153	54	5	0	0	0	0.31747	1	12754	12754		60.972	0	1	2451300			43368	899	35856	35879	46810	46810					0.16232356304840323
PNKIKLITL	9	Unmodified	_PNKIKLITL_					0	0	0		ENSG00000007314|ENST00000435607|SCN4A	ENSG00000007314|ENST00000435607|SCN4A	ENSG00000007314|ENST00000435607|SCN4A	MULTI-MSMS	OvCa9_classI_Rep3	3	520.3474731445312	2	520.347335	1038.68012	0.45282	0.00023562	-0.76983	-0.00040058	-0.31702	-0.00016496	520.346854726536	130.58	2.2687	129.46	129.13	131.39	-1.1166					144	45	5	0	0	0	0.55588	2	10445	10445;10499		37.159	0	1	1601100			43369	899	35856	35879	46811;46812	46811					0.16232356304840323
PNKIKLITL	9	Unmodified	_PNKIKLITL_					0	0	0		ENSG00000007314|ENST00000435607|SCN4A	ENSG00000007314|ENST00000435607|SCN4A	ENSG00000007314|ENST00000435607|SCN4A	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.34716796875	2	520.347335	1038.68012	2.9948	0.0015583	-3.7019	-0.0019263	-0.70713	-0.00036795	520.3453507640438	130.94	2.3528	129.46	129.06	131.41	-1.4779					149	47	5	0	0	0	0.48324	2	12679	12666;12679		44.117	6.9577	1	2675200			43370	899	35856	35879	46813;46814	46814					0.16232356304840323
PNKYNFSF	8	Unmodified	_PNKYNFSF_					0	0	0		ENSG00000206527|ENST00000383657|HACD2	ENSG00000206527|ENST00000383657|HACD2	ENSG00000206527|ENST00000383657|HACD2	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.80377197265625	2	508.745442	1015.47633	-0.68673	-0.00034937	3.9555	0.0020123	3.2687	0.001663	508.74748675556094	74.295	0.57709	72.324	71.957	72.534	-1.9711					16	10	2	0	0	0	0.028476	1	6100	6100		25.45	8.0852	1	25863			43371	9099	35857	35880	46815	46815					-0.03078788136622279
PNKYNFSF	8	Unmodified	_PNKYNFSF_					0	0	0		ENSG00000206527|ENST00000383657|HACD2	ENSG00000206527|ENST00000383657|HACD2	ENSG00000206527|ENST00000383657|HACD2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	508.745442	1015.47633	-0.14627	-7.4416E-05	2.4932	0.0012684	2.3469	0.001194	508.7469178638675	75.334	0.48446	72.103	71.867	72.351	-3.2308	-0.11064	-0.00070081	NaN	25.45	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66929			43372	9099	35857	35880							-0.03078788136622279
PNLAFSQM	8	Oxidation (M)	_PNLAFSQM(Oxidation (M))_		PNLAFSQM(1)		PNLAFSQM(82)	0	0	1		ENSG00000112992|ENST00000344920|NNT;SUMF1-NNT|1|fusion;SUMF1-NNT|2|fusion	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-MSMS	OvCa99_classI_Rep5	1	462.21783447265625	2	462.218203	922.421853	0.17613	8.1411E-05	-3.5039	-0.0016196	-3.3278	-0.0015382	462.21643130215733	58.214	0.87488	58.214	57.899	58.774	0					53	20	4	0	0	0	0.45246	1	4928	4928		82.305	8.3303	1	3533400			43373	2942	35858	35881	46816	46816		93			-0.042461232796767945
PNLELLLT	8	Unmodified	_PNLELLLT_					0	0	0			REV__ENSG00000075539|ENST00000358350|FRYL	REV__ENSG00000075539|ENST00000358350|FRYL	MULTI-MSMS	OvCa9_classI_Rep3	3	456.7734375	2	456.773668	911.532783	-1.4978	-0.00068416	-1.3282	-0.00060667	-2.826	-0.0012908	456.77287635868555	138.2	0.73259	137.14	136.85	137.59	-1.0595					26	14	3	0	0	0	0.75241	1	11284	11284		25.45	0	1	25128	+		43374	16974	35859	35882	46817	46817					0.07347839700048553
PNLFHPVYV	9	Unmodified	_PNLFHPVYV_					0	0	0			REV__chr3:195070111-195087933|297|11.33|0.27|5.37|-|1|TE_info:L1PA2,L1PA2_dup1050,L1,LINE,donor,+,195087933,195093677|XXYLT1,None|10	REV__chr3:195070111-195087933|297|11.33|0.27|5.37|-|1|TE_info:L1PA2,L1PA2_dup1050,L1,LINE,donor,+,195087933,195093677|XXYLT1,None|10	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.7772827148438	2	543.292559	1084.57057	2.0581	0.0011182	2.6448	0.0014369	4.7029	0.0025551	543.293253357321	118.09	0.31929	118.09	117.88	118.2	0					8	6	2	0	0	0	0.027462	1	13544	13544		26.796	2.2769	1	29778	+		43375	15920	35860	35883	46818	46818					0.031663506855238666
PNLFVRPRLFR	11	Unmodified	_PNLFVRPRLFR_					0	0	0			REV__chr2:27070590-27071326|176|69.51|0.19|8.5|-|1|None,OST4|2	REV__chr2:27070590-27071326|176|69.51|0.19|8.5|-|1|None,OST4|2	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.2839660644531	3	472.285851	1413.83572	-5.3969	-0.0025489	1.1779	0.00055629	-4.219	-0.0019926	472.28668669654706	159.46	3.529	157.88	156.69	160.22	-1.5858					186	88	4	0	0	0	0.72545	1	15839	15839		9.6461	0.43434	1	120390	+		43376	16000	35861	35884	46819	46819					0.14535819878960865
PNLGEQIHVL	10	Unmodified	_PNLGEQIHVL_					0	0	0			REV__ENSG00000119608|ENST00000556489|PROX2	REV__ENSG00000119608|ENST00000556489|PROX2	MULTI-SECPEP	OvCa9_classI_Rep2	2	559.82470703125	2	560.31148	1118.60841	-0.1767	-9.9008E-05	-0.76361	-0.00042786	-0.94032	-0.00052687	560.3110731445964	47.742	0.44501	45.033	44.885	45.331	-2.7097					13	8	2	0	0	0	0.026659	1	2961	2961		64.207	7.4862	1	19395	+		43377	18453	35862	35885	46820	46820					0.053848168803369845
PNLGEQIHVL	10	Unmodified	_PNLGEQIHVL_					0	0	0			REV__ENSG00000119608|ENST00000556489|PROX2	REV__ENSG00000119608|ENST00000556489|PROX2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.826416015625	2	560.31148	1118.60841	0.66756	0.00037404	0.084991	4.7622E-05	0.75255	0.00042166	560.8127596685084	48.347	0.46339	45.239	45.039	45.502	-3.1077					13	8	2	0	0	0	0.026659	1	2683	2683		54.776	8.8244	1	35443	+		43378	18453	35862	35885	46821	46821					0.053848168803369845
PNLGPLGLGPK	11	Unmodified	_PNLGPLGLGPK_					0	0	0			REV__LTR2B_dup28|chr1:206052519-206053000:+|3.33704540871394|0.313813797577368|3.41|415.0|14|3|sense	REV__LTR2B_dup28|chr1:206052519-206053000:+|3.33704540871394|0.313813797577368|3.41|415.0|14|3|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8169555664062	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.71498	1	11334	11334		24.519	3.5723	1	178650	+		43379	28630	35863	35886	46822	46822					0.09498308748334239
PNLIGKPDLLA	11	Unmodified	_PNLIGKPDLLA_					0	0	0			REV__ENSG00000180902|ENST00000321264|D2HGDH	REV__ENSG00000180902|ENST00000321264|D2HGDH	MULTI-MSMS	OvCa9_classI_Rep2	2	575.843017578125	2	575.845156	1149.67576	-2.8608	-0.0016474	-0.58729	-0.00033819	-3.4481	-0.0019856	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.71789	1	14685	14685		23.523	0.94304	1	356230	+		43380	22205	35864	35887	46823	46823					0.10690847091291289
PNLIGNKFV	9	Unmodified	_PNLIGNKFV_					0	0	0		nc|ENSG00000173947|Q8TCI5-2|CIMAP3;ENST00000484512.1_1_1:111889274-111891329:+|nuORF;nc|ENSG00000173947|Q8TCI5-3|CIMAP3;ENSG00000173947|ENST00000369738|PIFO	nc|ENSG00000173947|Q8TCI5-2|CIMAP3	nc|ENSG00000173947|Q8TCI5-2|CIMAP3	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2898864746094	2	501.292559	1000.57057	-1.4695	-0.00073667	-2.6975	-0.0013522	-4.167	-0.0020889	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.62352	1	11100	11100		29.15	1.2673	1	97838			43381	7429	35865	35888	46824	46824					0.07030350685522535
PNLISVIVV	9	Unmodified	_PNLISVIVV_					0	0	0			REV__tr|A0A553SUQ8|A0A553SUQ8_NIACIRiboseABCtransporterpermeaseOS=NialliacirculansOX=1397GN=rbsCPE=4SV=1	REV__tr|A0A553SUQ8|A0A553SUQ8_NIACIRiboseABCtransporterpermeaseOS=NialliacirculansOX=1397GN=rbsCPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.2833251953125	2	477.305136	952.595718	1.5887	0.00075829	-0.79308	-0.00037854	0.79562	0.00037975	477.3043565097905	89.321	1.1388	87.953	87.675	88.814	-1.3676					38	22	3	0	0	0	0.027462	1	7829	7829		19.36	12.167	1	78230	+		43382	31111	35866	35889	46825	46825					0.11752405488095974
PNLISVIVV	9	Unmodified	_PNLISVIVV_					0	0	0			REV__tr|A0A553SUQ8|A0A553SUQ8_NIACIRiboseABCtransporterpermeaseOS=NialliacirculansOX=1397GN=rbsCPE=4SV=1	REV__tr|A0A553SUQ8|A0A553SUQ8_NIACIRiboseABCtransporterpermeaseOS=NialliacirculansOX=1397GN=rbsCPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	477.305136	952.595718	0.37567	0.00017931	0.25918	0.00012371	0.63485	0.00030302	477.30480774342783	90.541	0.97594	87.966	87.7	88.676	-2.575	-0.00656	0.00022641	NaN	19.36	42	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109280	+		43383	31111	35866	35889							0.11752405488095974
PNLLHRLML	9	Unmodified	_PNLLHRLML_					0	0	0		ENST00000432874.7_2_1:38184128-38186086:-|nuORF;ENST00000446149.6_1_1:38181546-38201012:-|nuORF;nc|ENSG00000183317|Q5JZY3-3|EPHA10;ENSG00000183317|ENST00000373048|EPHA10	ENST00000432874.7_2_1:38184128-38186086:-|nuORF	ENST00000432874.7_2_1:38184128-38186086:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8302001953125	2	553.828786	1105.64302	2.064	0.0011431	0.48569	0.00026899	2.5496	0.0014121	553.8288797091304	138.06	1.0604	136.53	135.73	136.79	-1.5284					43	23	2	0	0	0	0.65476	1	13405	13405		25.45	2.4077	1	28092			43384	8066	35867	35890	46826	46826					0.09442361487435846
PNLQARSNIL	10	Unmodified	_PNLQARSNIL_					0	0	0			REV__tr|A0A7D6ZGB9|A0A7D6ZGB9_9CLOTPocRligand-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17685PE=4SV=1	REV__tr|A0A7D6ZGB9|A0A7D6ZGB9_9CLOTPocRligand-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17685PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	563.3181762695312	2	563.32238	1124.63021	-6.0709	-0.0034199	-0.15013	-8.4571E-05	-6.221	-0.0035044	563.322073230946	155.76	0.93549	154.68	154.4	155.34	-1.073					61	26	3	0	0	0	0.64697	1	13391	13391		36.447	0.82846	1	103840	+		43385	31992	35868	35891	46827	46827					0.07287621628893248
PNLQSVVLRG	10	Unmodified	_PNLQSVVLRG_					0	0	0			REV__ENSG00000072071|ENST00000361434|ADGRL1	REV__ENSG00000072071|ENST00000361434|ADGRL1	MULTI-MSMS	OvCa9_classI_Rep3	3	541.818603515625	2	541.819473	1081.62439	0.49266	0.00026694	-0.70657	-0.00038283	-0.21391	-0.0001159	541.8190905602746	72.496	2.1818	69.894	69.571	71.753	-2.6023					94	43	3	0	0	0	0.6349	1	3475	3475		37.812	0	1	1635600	+		43386	16909	35869	35892	46828	46828					0.08684523117221943
PNLSLKVSK	9	Unmodified	_PNLSLKVSK_					0	0	0			REV__ENSG00000148843|ENST00000369797|PDCD11	REV__ENSG00000148843|ENST00000369797|PDCD11	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.7882995605469	2	493.305667	984.596781	0.51782	0.00025545	-1.1862	-0.00058518	-0.66842	-0.00032974	493.30494713433364	98.043	1.116	95.665	95.418	96.534	-2.3786					51	21	3	0	0	0	0.027462	1	8740	8740		27.882	4.8398	1	281640	+		43387	20133	35870	35893	46829	46829					0.10386619857013102
PNLVARKVSV	10	Unmodified	_PNLVARKVSV_					0	0	0		nc|ENSG00000196557|O95180-2|CACNA1H;ENSG00000196557|ENST00000348261|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	nc|ENSG00000196557|O95180-2|CACNA1H	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.81884765625	2	541.837665	1081.66078	-1.3598	-0.0007368	0.1582	8.5717E-05	-1.2016	-0.00065109	541.8374802227393	73.776	1.1444	70.38	70.027	71.172	-3.3961					49	23	3	0	0	0	0.026782	1	5734	5734		37.812	0	1	168290			43388	8625	35871	35894	46830	46830					0.12321400013956918
PNLVHKRG	8	Unmodified	_PNLVHKRG_					0	0	0		ENSG00000162688|ENST00000361915|AGL;nc|ENSG00000162688|P35573-2|AGL;nc|ENSG00000162688|P35573-3|AGL	ENSG00000162688|ENST00000361915|AGL	ENSG00000162688|ENST00000361915|AGL	MULTI-MSMS	OvCa9_classI_Rep2	2	460.7745056152344	2	460.774868	919.535184	-1.1981	-0.00055207	1.279	0.00058935	0.0809	3.7277E-05	460.77529207790866	38.685	0.93974	35.975	35.766	36.706	-2.7097					36	18	3	0	0	0	0.75241	1	1831	1831		25.45	4.5032	1	91166			43389	6215	35872	35895	46831	46831					0.07219732948374258
PNLVTDEAE	9	Unmodified	_PNLVTDEAE_					0	0	0		nc|ENSG00000159640|P12821-4|ACE;nc|ENSG00000159640|P12821-3|ACE	nc|ENSG00000159640|P12821-4|ACE	nc|ENSG00000159640|P12821-4|ACE	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.7879638671875	2	494.235104	986.455655	-0.37701	-0.00018633	-0.036626	-1.8102E-05	-0.41364	-0.00020443	494.23503622845993	104.82	0.69448	104.82	104.62	105.31	0					27	15	3	0	0	0	0.027462	1	11773	11773		37.159	0	1	401090			43390	15125	35873	35896	46832	46832					-0.038114233069450165
PNLYGLICF	9	Unmodified	_PNLYGLICF_					0	0	0			REV__ENST00000437877.1_2_7:1980028-1980091:-|nuORF	REV__ENST00000437877.1_2_7:1980028-1980091:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.2982177734375	2	520.267696	1038.52084	0.32245	0.00016776	-0.36897	-0.00019196	-0.046526	-2.4206E-05	520.2676192422849	70.3	0.95563	67.729	67.262	68.218	-2.5707					12	9	2	0	0	0	0.027462	1	5656	5656		30.504	2.6214	1	38826	+		43391	25802	35874	35897	46833	46833					0.003118996852208511
PNLYNNFYEMV	11	Unmodified	_PNLYNNFYEMV_					0	0	0			REV__tr|A0A7D6VRP8|A0A7D6VRP8_9CLOTTIMbarrelproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06515PE=4SV=1	REV__tr|A0A7D6VRP8|A0A7D6VRP8_9CLOTTIMbarrelproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06515PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.57958984375	3	468.548189	1402.62274	-0.59872	-0.00028053	0.24834	0.00011636	-0.35038	-0.00016417	468.54822611017727	37.606	0.41312	37.606	37.438	37.851	0					15	8	3	0	0	0	0.025995	1	2072	2072		8.7993	0	1	82496	+		43392	31432	35875	35898	46834	46834					-0.06246898753715868
PNLYWKNQ	8	Unmodified	_PNLYWKNQ_					0	0	0			REV__ENSG00000171320|ENST00000305188|ESCO2	REV__ENSG00000171320|ENST00000305188|ESCO2	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.27880859375	2	531.771991	1061.52943	1.8521	0.00098491	-2.8509	-0.001516	-0.99873	-0.00053109	531.7704501667082	87.256	0.49208	87.256	87.054	87.546	0					13	11	2	0	0	0	0.028476	1	9211	9211		31.955	9.995	1	534090	+		43393	21609	35876	35899	46835	46835					0.0011258964602802735
PNMILARAI	9	Unmodified	_PNMILARAI_					0	0	0			REV__tr|A0A7D6ZYJ6|A0A7D6ZYJ6_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02930PE=3SV=1	REV__tr|A0A7D6ZYJ6|A0A7D6ZYJ6_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02930PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	499.2696533203125	2	499.794412	997.574271	-1.4461	-0.00072275	-1.3514	-0.00067541	-2.7975	-0.0013982	499.7934528599665	102.02	0.89207	101.25	100.96	101.85	-0.764					35	17	3	0	0	0	0.027462	1	9421	9421		24.203	0	1	79170	+		43394	32378	35877	35900	46836	46836					0.07538697187715115
PNMILARAI	9	Unmodified	_PNMILARAI_					0	0	0			REV__tr|A0A7D6ZYJ6|A0A7D6ZYJ6_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02930PE=3SV=1	REV__tr|A0A7D6ZYJ6|A0A7D6ZYJ6_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02930PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	499.794412	997.574271	-0.519	-0.00025939	-2.238	-0.0011185	-2.757	-0.0013779	499.7929293067336	102.89	0.99536	101.37	101.05	102.05	-1.5211	-0.0011882	-0.00025804	NaN	31.955	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76519	+		43395	32378	35877	35900							0.07538697187715115
PNMPWFKGWK	10	Unmodified	_PNMPWFKGWK_					0	0	0		ENSG00000101210|ENST00000217182|EEF1A2	ENSG00000101210|ENST00000217182|EEF1A2	ENSG00000101210|ENST00000217182|EEF1A2	MULTI-MSMS	OvCa9_classI_Rep2	2	645.8250122070312	2	645.826243	1289.63793	-2.9064	-0.001877	1.0006	0.00064619	-1.9058	-0.0012308	645.8267838930211	35.025	1.3406	32.316	32.059	33.4	-2.7097					67	26	4	0	0	0	0.72142	1	1393	1393		10.866	0	1	141700			43396	2151	35878	35901	46837	46837					0.00470057624806941
PNNEIRDVK	9	Unmodified	_PNNEIRDVK_					0	0	0			REV__nc|ENSG00000141027|O75376-2|NCOR1	REV__nc|ENSG00000141027|O75376-2|NCOR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.3203735351562	2	542.790912	1083.56727	-0.17207	-9.34E-05	3.9808	0.0021607	3.8087	0.0020673	542.7926508317167	60.458	0.57754	60.458	60.238	60.816	0					28	12	3	0	0	0	0.027402	1	5285	5285		56.721	0	1	905760	+		43397	19717	35879	35902	46838	46838					0.028830558408344586
PNNEKITVL	9	Unmodified	_PNNEKITVL_					0	0	0			REV__nc|ENSG00000156239|Q9Y5N5-2|N6AMT1	REV__nc|ENSG00000156239|Q9Y5N5-2|N6AMT1	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.8255615234375	2	514.292756	1026.57096	-0.32422	-0.00016674	-0.61525	-0.00031642	-0.93947	-0.00048316	514.2921362002108	67.298	0.64347	64.637	64.199	64.842	-2.661					18	12	2	0	0	0	0.027461	1	5269	5269		49.442	10.189	1	56959	+		43398	20470	35880	35903	46839	46839					0.05873725614696923
PNNVFQIAW	9	Unmodified	_PNNVFQIAW_					0	0	0			REV__tr|A0A7D6ZRQ7|A0A7D6ZRQ7_9CLOTDUF4116domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04655PE=4SV=1	REV__tr|A0A7D6ZRQ7|A0A7D6ZRQ7_9CLOTDUF4116domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04655PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	544.7792358398438	2	544.779816	1087.54508	1.5844	0.00086316	-2.2916	-0.0012484	-0.70721	-0.00038527	544.7783465181305	61.638	1.529	58.569	57.997	59.526	-3.0685					84	39	3	0	0	0	0.65476	1	2192	2192		25.45	1.2474	1	38046	+		43399	32164	35881	35904	46840	46840					0.004808761630556546
PNPRLAPL	8	Unmodified	_PNPRLAPL_					0	0	0		ENSG00000198753|ENST00000361971|PLXNB3;nc|ENSG00000198753|Q9ULL4-2|PLXNB3	ENSG00000198753|ENST00000361971|PLXNB3	ENSG00000198753|ENST00000361971|PLXNB3	MULTI-SECPEP	OvCa99_classI_Rep5	1	439.8685607910156	2	439.266345	876.518136	1.1338	0.00049803	-1.3879	-0.00060966	-0.25413	-0.00011163	439.26561871355085	31.242	0.48185	31.242	31.027	31.509	0					13	9	2	0	0	0	0.028476	1	1277	1277		13.775	6.085	1	49794			43400	8866	35882	35905	46841	46841					0.07493812342545425
PNPSPLSHN	9	Unmodified	_PNPSPLSHN_					0	0	0			REV__ENST00000482560.6_1_7:104704021-104704555:+|nuORF	REV__ENST00000482560.6_1_7:104704021-104704555:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	481.7379150390625	2	481.738148	961.461744	1.3747	0.00066224	-0.00019707	-9.4937E-08	1.3745	0.00066215	481.73812996629147	146.56	0.68504	146.56	146.33	147.01	0					20	13	2	0	0	0	0.44568	1	17135	17135		47.657	5.2612	1	55130	+		43401	26505	35883	35906	46842	46842					-0.020528602847548427
PNPSPLSHN	9	Unmodified	_PNPSPLSHN_					0	0	0			REV__ENST00000482560.6_1_7:104704021-104704555:+|nuORF	REV__ENST00000482560.6_1_7:104704021-104704555:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	481.738148	961.461744	1.3747	0.00066224	-0.00019707	-9.4937E-08	1.3745	0.00066215	481.73812996629147	146.56	0.68504	146.56	146.33	147.01	0	0	0	NaN	47.657	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55130	+		43402	26505	35883	35906							-0.020528602847548427
PNPTTLLLVS	10	Unmodified	_PNPTTLLLVS_					0	0	0		Harlequin-int_dup161|chr4:91353598-91357139:-|1.3911466287095282|0.2716421829311496|2.36|422.0|96|3|sense	Harlequin-int_dup161|chr4:91353598-91357139:-|1.3911466287095282|0.2716421829311496|2.36|422.0|96|3|sense	Harlequin-int_dup161|chr4:91353598-91357139:-|1.3911466287095282|0.2716421829311496|2.36|422.0|96|3|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	527.808837890625	2	527.810782	1053.60701	-0.67727	-0.00035747	-2.3895	-0.0012612	-3.0668	-0.0016187	527.8093655987052	42.514	0.68421	42.514	42.242	42.926	0					32	15	3	0	0	0	0.64697	1	2736	2736		36.447	8.3653	1	686540			43403	14370	35884	35907	46843	46843					0.08235182791577245
PNQKRLTLL	9	Unmodified	_PNQKRLTLL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.818603515625	2	541.837665	1081.66078	0.46222	0.00025045	-1.4058	-0.0007617	-0.94355	-0.00051125	541.8365337782732	72.644	1.6858	70.042	69.67	71.356	-2.6023					69	33	4	0	0	0	0.027459	1	3475	3475		44.377	1.5129	1	202950			43404	1390	35885	35908	46844	46844					0.12321400013956918
PNRCSIINVVK	11	Unmodified	_PNRCSIINVVK_					0	0	0			REV__tr|A0A7D7A653|A0A7D7A653_9CLOTAspartatecarbamoyltransferaseregulatorysubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_08990PE=4SV=1	REV__tr|A0A7D7A653|A0A7D7A653_9CLOTAspartatecarbamoyltransferaseregulatorysubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_08990PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	621.8508911132812	2	621.85299	1241.69143	-0.10234	-6.3644E-05	-2.8456	-0.0017696	-2.948	-0.0018332	621.8512364996373	71.451	1.5184	68.944	68.541	70.06	-2.5072					75	28	4	0	0	0	0.69455	1	5749	5749		31.53	1.0262	1	512400	+		43405	32651	35886	35909	46845	46845					0.08024810336655719
PNREIKLKTIQ	11	Unmodified	_PNREIKLKTIQ_					0	0	0			REV__nc|ENSG00000122145|Q9Y458-2|TBX22	REV__nc|ENSG00000122145|Q9Y458-2|TBX22	MULTI-SECPEP	OvCa9_classI_Rep2	2	447.7613220214844	3	447.273388	1338.79833	3.2546	0.0014557	-3.3476	-0.0014973	-0.093007	-4.16E-05	447.2718638508189	42.091	0.59243	39.382	39.177	39.769	-2.7097					19	11	2	0	0	0	0.026101	1	2232	2232		21.032	0	1	11600	+		43406	18580	35887	35910	46846	46846					0.14248683822711428
PNRFIVLI	8	Unmodified	_PNRFIVLI_					0	0	0			REV__ENSG00000138068|ENST00000535679|SULT6B1	REV__ENSG00000138068|ENST00000535679|SULT6B1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.3048095703125	2	486.30547	970.596387	0.78572	0.0003821	-1.2488	-0.0006073	-0.46308	-0.0002252	486.30477333878326	121.54	2.2543	120.51	120.01	122.27	-1.0286					108	42	4	0	0	0	0.74679	1	9336	9336		28.254	4.0515	1	892460	+		43407	19505	35888	35911	46847	46847					0.10991244927799926
PNRGLYQL	8	Unmodified	_PNRGLYQL_					0	0	0		ENSG00000130385|ENST00000252677|BMP15	ENSG00000130385|ENST00000252677|BMP15	ENSG00000130385|ENST00000252677|BMP15	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.7693786621094	2	480.766709	959.518865	0.11463	5.511E-05	-0.42615	-0.00020488	-0.31152	-0.00014977	480.76637305248687	56.948	2.4306	53.603	52.668	55.098	-3.3449					134	47	4	0	0	0	0.65582	1	3687	3687		52.299	6.3472	1	828540			43408	3985	35889	35912	46848	46848					0.03748606991609904
PNRGPFDL	8	Unmodified	_PNRGPFDL_					0	0	0		ENSG00000168569|ENST00000307366|TMEM223	ENSG00000168569|ENST00000307366|TMEM223	ENSG00000168569|ENST00000307366|TMEM223	MULTI-MSMS	OvCa9_classI_Rep2	2	458.2392883300781	2	458.237784	914.461016	-0.48888	-0.00022402	4.0255	0.0018446	3.5366	0.0016206	458.2395351157387	52.859	1.7336	50.045	49.591	51.325	-2.8139					75	34	3	0	0	0	0.7043	1	3582	3582		42.474	3.6683	1	376680			43409	6921	35890	35913	46849	46849					0.00036345066178000707
PNRLPFIL	8	Unmodified	_PNRLPFIL_					0	0	0			REV__ENSG00000274102|ENST00000614722|OR4M2	REV__ENSG00000274102|ENST00000614722|OR4M2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.2645568847656	2	485.297645	968.580737	-0.46524	-0.00022578	-3.7285	-0.0018095	-4.1938	-0.0020352	485.29542616562253	55.937	1.2666	52.643	52.26	53.527	-3.2944					35	24	2	0	0	0	0.028476	1	3556	3556		35.201	13.498	1	123310	+		43410	23620	35891	35914	46850	46850					0.09518958410740197
PNRQDLLNP	9	Unmodified	_PNRQDLLNP_					0	0	0		ENSG00000080839|ENST00000373664|RBL1;nc|ENSG00000080839|P28749-2|RBL1	ENSG00000080839|ENST00000373664|RBL1	ENSG00000080839|ENST00000373664|RBL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.8056030273438	2	533.78563	1065.55671	-0.76645	-0.00040912	0.10428	5.5665E-05	-0.66217	-0.00035346	533.7854903213405	56.799	0.86411	53.455	53.07	53.934	-3.3449					27	16	2	0	0	0	0.027462	1	3620	3620		34.173	15.069	1	44589			43411	1644	35892	35915	46851	46851					0.026550731864062982
PNRSFSDVHT	10	Unmodified	_PNRSFSDVHT_					0	0	0		nc|ENSG00000136933|Q7Z6M1-2|RABEPK;ENSG00000136933|ENST00000373538|RABEPK	nc|ENSG00000136933|Q7Z6M1-2|RABEPK	nc|ENSG00000136933|Q7Z6M1-2|RABEPK	MULTI-SECPEP	OvCa9_classI_Rep4_	4	580.3215942382812	2	580.278169	1158.54179	-0.63881	-0.00037069	0.12096	7.0188E-05	-0.51785	-0.0003005	580.2781602130764	48.086	1.0768	44.978	44.632	45.709	-3.1077					34	20	3	0	0	0	0.027028	1	2705	2705		31.53	14.062	1	35357			43412	4536	35893	35916	46852	46852					-0.031144186815708963
PNRSFSDVHT	10	Unmodified	_PNRSFSDVHT_					0	0	0		nc|ENSG00000136933|Q7Z6M1-2|RABEPK;ENSG00000136933|ENST00000373538|RABEPK	nc|ENSG00000136933|Q7Z6M1-2|RABEPK	nc|ENSG00000136933|Q7Z6M1-2|RABEPK	MULTI-MATCH	OvCa9_classI_Rep2	2		2	580.278169	1158.54179	-0.9922	-0.00057575	0.47701	0.0002768	-0.51519	-0.00029896	580.7798857530748	47.641	0.49488	44.932	44.737	45.231	-2.7097	-0.023115	0.00026677	NaN	24.519	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13045			43413	4536	35893	35916							-0.031144186815708963
PNRTACLDQ	9	Unmodified	_PNRTACLDQ_					0	0	0			REV__ENSG00000186487|ENST00000647738|MYT1L	REV__ENSG00000186487|ENST00000647738|MYT1L	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.24249267578125	2	509.242741	1016.47093	-0.091501	-4.6596E-05	-4.3545	-0.0022175	-4.446	-0.0022641	509.24024870249735	61.537	2.1867	58.08	57.216	59.403	-3.4577					77	44	2	0	0	0	0.22621	1	4232	4232		71.877	2.2498	1	1687200	+		43414	22592	35894	35917	46853	46853					-0.03664834990740928
PNSEYLRSD	9	Unmodified	_PNSEYLRSD_					0	0	0			REV__nc|ENSG00000102053|Q5HYM0-2|ZC3H12B	REV__nc|ENSG00000102053|Q5HYM0-2|ZC3H12B	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.284423828125	2	540.751453	1079.48835	1.8329	0.00099116	-2.8775	-0.001556	-1.0445	-0.00056484	540.7499926620934	128.16	0.51559	128.16	127.95	128.47	0					12	10	2	0	0	0	0.027462	1	14820	14820		23.042	0	1	66889	+		43415	17535	35895	35918	46854	46854					-0.04821216184086552
PNSMVARM	8	Unmodified	_PNSMVARM_					0	0	0		tr|A0A553SNV0|A0A553SNV0_NIACIDipicolinatesynthasesubunitBOS=NialliacirculansOX=1397GN=dpaBPE=4SV=1	tr|A0A553SNV0|A0A553SNV0_NIACIDipicolinatesynthasesubunitBOS=NialliacirculansOX=1397GN=dpaBPE=4SV=1	tr|A0A553SNV0|A0A553SNV0_NIACIDipicolinatesynthasesubunitBOS=NialliacirculansOX=1397GN=dpaBPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	453.25775146484375	2	453.220223	904.425892	-1.5885	-0.00071993	-3.5349	-0.0016021	-5.1234	-0.002322	453.2187131994569	49.468	0.25678	46.327	46.095	46.352	-3.1416					6	4	2	0	0	0	0.028476	1	2773	2773		33.516	0	1	15380			43416	33965	35896	35919	46855	46855					-0.03014357057622874
PNSPRTPLPP	10	Unmodified	_PNSPRTPLPP_					0	0	0		nc|ENSG00000142512|Q96LC7-8|SIGLEC10;ENST00000357375.4_1_19:51914355-51919928:-|nuORF;nc|ENSG00000142512|Q96LC7-9|SIGLEC10;nc|ENSG00000142512|Q96LC7-6|SIGLEC10;nc|ENSG00000142512|Q96LC7-7|SIGLEC10;nc|ENSG00000142512|Q96LC7-2|SIGLEC10;nc|ENSG00000142512|Q96LC7-4|SIGLEC10;nc|ENSG00000142512|Q96LC7-3|SIGLEC10;ENSG00000142512|ENST00000339313|SIGLEC10	nc|ENSG00000142512|Q96LC7-8|SIGLEC10	nc|ENSG00000142512|Q96LC7-8|SIGLEC10	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.3082885742188	2	538.298373	1074.58219	-2.0025	-0.001078	2.2949	0.0012354	0.29239	0.00015739	538.2992432663084	68.14	0.78752	65.479	65.09	65.878	-2.661					21	15	2	0	0	0	0.02661	1	5399	5399		49.442	8.6634	1	21467			43417	4975	35897	35920	46856	46856					0.047885477088584594
PNSPRTPLPP	10	Unmodified	_PNSPRTPLPP_					0	0	0		nc|ENSG00000142512|Q96LC7-8|SIGLEC10;ENST00000357375.4_1_19:51914355-51919928:-|nuORF;nc|ENSG00000142512|Q96LC7-9|SIGLEC10;nc|ENSG00000142512|Q96LC7-6|SIGLEC10;nc|ENSG00000142512|Q96LC7-7|SIGLEC10;nc|ENSG00000142512|Q96LC7-2|SIGLEC10;nc|ENSG00000142512|Q96LC7-4|SIGLEC10;nc|ENSG00000142512|Q96LC7-3|SIGLEC10;ENSG00000142512|ENST00000339313|SIGLEC10	nc|ENSG00000142512|Q96LC7-8|SIGLEC10	nc|ENSG00000142512|Q96LC7-8|SIGLEC10	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	538.298373	1074.58219	-1.0711	-0.00057656	1.9108	0.0010286	0.83971	0.00045202	538.2988978272946	69.147	0.68833	65.656	65.262	65.951	-3.4902	0.088622	-0.00024453	NaN	49.442	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27410			43418	4975	35897	35920							0.047885477088584594
PNSRRQARR	9	Unmodified	_PNSRRQARR_					0	0	0			REV__ENSG00000169562|ENST00000361726|GJB1	REV__ENSG00000169562|ENST00000361726|GJB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	571.3314208984375	2	570.826486	1139.63842	-3.9994	-0.002283	-4.4801	-0.0025573	-8.4795	-0.0048403	571.3242752294143	153.81	0.75284	152.35	151.99	152.74	-1.4516					34	23	2	0	0	0	0.65371	1	15219	15219		25.574	1.0549	1	30213	+		43419	21468	35898	35921	46857	46857					0.07418613388881568
PNTGKKSGKLK	11	Unmodified	_PNTGKKSGKLK_					0	0	0		ENSG00000078668|ENST00000022615|VDAC3;nc|ENSG00000078668|Q9Y277-2|VDAC3;ENST00000521348.5_1_8:42251729-42259534:+|nuORF	ENSG00000078668|ENST00000022615|VDAC3	ENSG00000078668|ENST00000022615|VDAC3	MULTI-SECPEP	OvCa9_classI_Rep2	2	579.3169555664062	2	579.35368	1156.69281	-1.865	-0.0010805	-0.74057	-0.00042905	-2.6056	-0.0015096	579.3542447817113	38.517	0.24719	35.808	35.667	35.915	-2.7097					6	4	2	0	0	0	0.025594	1	1805	1805		33.922	0	1	7422.7			43420	1596	35899	35922	46858	46858					0.12072767697077325
PNTNRPPLKE	10	Unmodified	_PNTNRPPLKE_					0	0	0			REV__nc|ENSG00000166313|O00213-2|APBB1	REV__nc|ENSG00000166313|O00213-2|APBB1	MULTI-MSMS	OvCa99_classI_Rep5	1	583.3190307617188	2	583.319837	1164.62512	-1.1454	-0.00066811	0.62563	0.00036494	-0.51974	-0.00030317	583.3201991499592	34.137	0.71443	34.137	33.824	34.539	0					36	14	4	0	0	0	0.6349	1	1621	1621		37.812	0.65241	1	877760	+		43421	21175	35900	35923	46859	46859					0.04939317766252316
PNTQLDLLGND	11	Unmodified	_PNTQLDLLGND_					0	0	0		nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-4|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	MULTI-MSMS	OvCa9_classI_Rep2	2	600.2985229492188	2	600.298767	1198.58298	0.023114	1.3875E-05	0.30079	0.00018057	0.32391	0.00019444	600.2989237607527	71.554	2.0411	69.047	68.229	70.27	-2.5071					84	38	3	0	0	0	0.52842	1	5765	5765		51.193	7.0759	1	1019300			43422	4667	35901	35924	46860	46860					-0.008367024327526451
PNTRLWGQRS	10	Unmodified	_PNTRLWGQRS_					0	0	0		ENST00000256692.5_1_12:45570154-45609744:-|nuORF	ENST00000256692.5_1_12:45570154-45609744:-|nuORF	ENST00000256692.5_1_12:45570154-45609744:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	607.8030395507812	2	607.823078	1213.6316	-0.052199	-3.1728E-05	1.1192	0.00068027	1.067	0.00064854	607.823988081132	73.116	0.51218	73.116	72.764	73.276	0					15	8	3	0	0	0	0.026635	1	7174	7174		66.429	0	1	861520			43423	9826	35902	35925	46861	46861					0.03333255717666361
PNVKGEFLPN	10	Unmodified	_PNVKGEFLPN_					0	0	0		ENSG00000204279|ENST00000374951|PAGE3	ENSG00000204279|ENST00000374951|PAGE3	ENSG00000204279|ENST00000374951|PAGE3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	558.3511352539062	2	557.798206	1113.58186	1.0302	0.00057462	-3.3429	-0.0018646	-2.3127	-0.00129	558.299396738707	83.868	0.38818	81.206	81.07	81.458	-2.6629					12	7	2	0	0	0	0.026782	1	6981	6981		37.812	0	1	50609			43424	8966	35903	35926	46862	46862					0.029611279890104925
PNWAHRLQ	8	Unmodified	_PNWAHRLQ_					0	0	0			REV__ENSG00000175093|ENST00000310546|SPSB4	REV__ENSG00000175093|ENST00000310546|SPSB4	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.7491455078125	2	511.26995	1020.52535	1.0262	0.00052468	-0.14236	-7.2787E-05	0.88386	0.00045189	511.26977617019026	154.08	0.29391	154.08	153.93	154.22	0					8	5	2	0	0	0	0.028476	1	18049	18049		26.796	0	1	18995	+		43425	21868	35904	35927	46863	46863					0.015905449429851615
PNYCSFKSQQ	10	Unmodified	_PNYCSFKSQQ_					0	0	0		ENST00000542357.1_1_12:6747897-6752833:-|nuORF;ENSG00000111644|ENST00000229243|ACRBP	ENST00000542357.1_1_12:6747897-6752833:-|nuORF	ENST00000542357.1_1_12:6747897-6752833:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.5790100097656	3	401.181729	1200.52336	1.2609	0.00050584	0.57064	0.00022893	1.8315	0.00073477	401.1818347969626	42.978	0.51621	42.978	42.753	43.27	0					17	11	2	0	0	0	0.026942	1	2803	2803		14.694	2.487	1	42239			43426	2835	35905	35928	46864	46864					-0.06888296647798597
PNYLDPLGPA	10	Unmodified	_PNYLDPLGPA_					0	0	0			REV__tr|A0A553SGI7|A0A553SGI7_NIACIAlpha-amylaseOS=NialliacirculansOX=1397GN=CEQ21_10965PE=3SV=1	REV__tr|A0A553SGI7|A0A553SGI7_NIACIAlpha-amylaseOS=NialliacirculansOX=1397GN=CEQ21_10965PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.8129272460938	2	528.771657	1055.52876	-2.0566	-0.0010875	-1.4389	-0.00076084	-3.4955	-0.0018483	528.7709350479873	72.539	0.38912	69.143	68.96	69.349	-3.3961					13	7	2	0	0	0	0.027084	1	5561	5561		3.1592	0	1	22463	+		43427	29705	35906	35929	46865	46865					0.003217502063534994
PNYLKILN	8	Unmodified	_PNYLKILN_					0	0	0			REV__tr|A0A7D6VRS1|A0A7D6VRS1_9CLOTFeMocofactorbiosynthesisproteinNifBOS=ClostridiumintestinaleOX=36845GN=nifBPE=3SV=1	REV__tr|A0A7D6VRS1|A0A7D6VRS1_9CLOTFeMocofactorbiosynthesisproteinNifBOS=ClostridiumintestinaleOX=36845GN=nifBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.7898864746094	2	487.78711	973.559667	3.5562	0.0017347	2.7211	0.0013273	6.2773	0.003062	487.7882512057077	132.82	4.8462	131.32	130.38	135.22	-1.5015					236	97	4	0	0	0	0.73626	1	12824	12824		33.516	0.70317	1	143240	+		43428	31440	35907	35930	46866	46866					0.07182948311242399
PPAGPHYPY	9	Unmodified	_PPAGPHYPY_					0	0	0		PRSS12|p.L753Sfs*15|1|0.04|ENSG00000164099|chr4:118282894-118282894|G/-|frameshift_variant;ENSG00000164099|ENST00000296498|PRSS12	PRSS12|p.L753Sfs*15|1|0.04|ENSG00000164099|chr4:118282894-118282894|G/-|frameshift_variant	PRSS12|p.L753Sfs*15|1|0.04|ENSG00000164099|chr4:118282894-118282894|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.7198486328125	2	499.74016	997.465767	-1.3605	-0.00067991	-2.0632	-0.001031	-3.4237	-0.001711	499.73875337934567	45.316	0.886	42.277	42.075	42.961	-3.0385					19	16	2	0	0	0	0.027462	1	2313	2313		29.842	25.525	1	44898			43429	6409	35908	35931	46867	46867					-0.03306770791061808
PPAPEPQV	8	Unmodified	_PPAPEPQV_					0	0	0			REV__ENSG00000168334|ENST00000340369|XIRP1	REV__ENSG00000168334|ENST00000340369|XIRP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	417.89874267578125	2	417.721436	833.428318	-0.069869	-2.9186E-05	0.36366	0.00015191	0.29379	0.00012272	417.7214304639178	49.339	0.47334	49.339	49.119	49.593	0					18	10	2	0	0	0	0.028476	1	3648	3648		33.516	15.191	1	524240	+		43430	21365	35909	35932	46868	46868					0.004941379433375914
PPAPHLVGPAI	11	Unmodified	_PPAPHLVGPAI_					0	0	0			REV__ENSG00000112290|ENST00000392589|WASF1	REV__ENSG00000112290|ENST00000392589|WASF1	MULTI-SECPEP	OvCa9_classI_Rep2	2	535.339599609375	2	534.813659	1067.61277	-1.5248	-0.00081547	-2.9702	-0.0015885	-4.495	-0.002404	534.8118431080802	47.602	0.94046	44.892	44.44	45.38	-2.7097					30	18	2	0	0	0	0.025652	1	2963	2963		6.7355	0	1	44187	+		43431	18091	35910	35933	46869	46869					0.08166326093896714
PPAPPRPVLL	10	Unmodified	_PPAPPRPVLL_					0	0	0		ENSG00000131379|ENST00000253697|C3orf20	ENSG00000131379|ENST00000253697|C3orf20	ENSG00000131379|ENST00000253697|C3orf20	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.3154907226562	2	528.831852	1055.64915	1.1865	0.00062745	-1.2163	-0.00064321	-0.02979	-1.5754E-05	528.8311242747927	126.09	0.52046	125.02	124.76	125.28	-1.0715					11	9	2	0	0	0	0.027021	1	9860	9860		37.159	21.517	1	7313.3			43432	4060	35911	35934	46870	46870					0.12355202990602265
PPARLVLL	8	Unmodified	_PPARLVLL_					0	0	0		ENST00000262096.12_1_8:17014207-17053083:+|nuORF	ENST00000262096.12_1_8:17014207-17053083:+|nuORF	ENST00000262096.12_1_8:17014207-17053083:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	439.75244140625	2	439.794738	877.574923	-0.4018	-0.00017671	0.70104	0.00030831	0.29924	0.00013161	439.79467308052546	104.66	0.57739	102.54	102.22	102.8	-2.1192					13	10	2	0	0	0	0.028476	1	9496	9496		14.664	0.88877	1	7120.6			43433	9879	35912	35935	46871	46871					0.1312385989907625
PPASTKAKFV	10	Unmodified	_PPASTKAKFV_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3031616210938	2	523.305667	1044.59678	-2.1227	-0.0011108	-1.8084	-0.00094634	-3.9311	-0.0020572	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.71173	1	11551	11551		29.17	1.0886	1	183010	+		43434	21918	35913	35936	46872	46872					0.07626619856978323
PPAVPRCQR	9	Carbamidomethyl (C)	_PPAVPRC(Carbamidomethyl (C))QR_	PPAVPRC(1)QR		PPAVPRC(42)QR		0	1	0		ENST00000496720.1_1_22:50722364-50724624:-|nuORF	ENST00000496720.1_1_22:50722364-50724624:-|nuORF	ENST00000496720.1_1_22:50722364-50724624:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.7893676757812	2	540.790192	1079.56583	-1.343	-0.00072627	2.1221	0.0011476	0.77912	0.00042134	540.7912779187661	40.455	0.7806	37.501	37.112	37.893	-2.9541					38	14	4	0	0	0	0.50066	1	1745	1745		42.474	6.0277	1	219080			43435	12793	35914	35937	46873	46873	149				0.02923143271095796
PPCALSCSKI	10	Unmodified	_PPCALSCSKI_					0	0	0			REV__ENST00000594582.1_1_19:49218521-49220230:-|nuORF	REV__ENST00000594582.1_1_19:49218521-49220230:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	509.7537536621094	2	509.756638	1017.49872	-2.1054	-0.0010733	0.66458	0.00033877	-1.4409	-0.00073449	509.7567770654691	139.82	0.7395	138.79	138.54	139.28	-1.0339					19	14	2	0	0	0	0.64063	1	11487	11487		37.159	8.0096	1	26252	+		43436	27982	35915	35938	46874	46874					-0.009326480548679683
PPCALSCSKI	10	Unmodified	_PPCALSCSKI_					0	0	0			REV__ENST00000594582.1_1_19:49218521-49220230:-|nuORF	REV__ENST00000594582.1_1_19:49218521-49220230:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	509.756638	1017.49872	-1.0715	-0.00054622	-0.58048	-0.0002959	-1.652	-0.00084212	509.75630188645	139.31	0.59116	139.08	138.76	139.35	-0.22696	0.20992	0.00030148	NaN	37.159	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22387	+		43437	27982	35915	35938							-0.009326480548679683
PPCALSCSKI	10	Unmodified	_PPCALSCSKI_					0	0	0			REV__ENST00000594582.1_1_19:49218521-49220230:-|nuORF	REV__ENST00000594582.1_1_19:49218521-49220230:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	509.756638	1017.49872	0.78612	0.00040073	-1.9824	-0.0010105	-1.1963	-0.0006098	509.75545378271215	140.24	0.90536	138.75	138.46	139.37	-1.4952	-0.12514	-0.0011278	NaN	37.159	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66635	+		43438	27982	35915	35938							-0.009326480548679683
PPCARDPLRH	10	Unmodified	_PPCARDPLRH_					0	0	0			REV__ENST00000600534.1_1_19:59084484-59085060:+|nuORF	REV__ENST00000600534.1_1_19:59084484-59085060:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	581.3055419921875	2	581.300924	1160.5873	2.1098	0.0012265	-0.6483	-0.00037686	1.4615	0.0008496	581.3005520808222	121.36	2.5025	121.36	120.97	123.47	0					160	54	5	0	0	0	0.74374	1	14092	14092		25.574	2.5316	1	9553200	+		43439	28030	35916	35939	46875	46875					0.013425282998241528
PPDPEREGEV	10	Unmodified	_PPDPEREGEV_					0	0	0			REV__ENSG00000165458|ENST00000298229|INPPL1	REV__ENSG00000165458|ENST00000298229|INPPL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.3060913085938	2	562.76456	1123.51457	0.0010074	5.6695E-07	-0.84223	-0.00047398	-0.84122	-0.00047341	562.7638967002173	36.063	0.50523	36.063	35.846	36.351	0					16	10	2	0	0	0	0.026994	1	1891	1891		25.574	9.9322	1	108530	+		43440	21089	35917	35940	46876	46876					-0.04224947012630764
PPDPEREGEV	10	Unmodified	_PPDPEREGEV_					0	0	0			REV__ENSG00000165458|ENST00000298229|INPPL1	REV__ENSG00000165458|ENST00000298229|INPPL1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	562.76456	1123.51457	1.5033	0.00084602	5.2208	0.0029381	6.7241	0.0037841	562.7667223527391	38.887	0.24777	35.96	35.849	36.097	-2.9264	-0.051196	0.005781	NaN	31.53	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4268.6	+		43441	21089	35917	35940							-0.04224947012630764
PPEPKKIP	8	Unmodified	_PPEPKKIP_					0	0	0		nc|ENSG00000106443|O94880-2|PHF14;ENST00000490957.5_1_7:11013950-11101713:+|nuORF;nc|ENSG00000106443|O94880-1|PHF14;ENSG00000106443|ENST00000634607|PHF14	nc|ENSG00000106443|O94880-2|PHF14	nc|ENSG00000106443|O94880-2|PHF14	MULTI-SECPEP	OvCa99_classI_Rep5	1	453.7406921386719	2	453.276378	904.538203	2.6348	0.0011943	-0.47531	-0.00021545	2.1595	0.00097884	453.2760329694576	84.727	0.4548	84.727	84.55	85.004	0					14	10	2	0	0	0	0.028476	1	8852	8852		25.45	1.2474	1	228050			43442	2551	35918	35941	46877	46877					0.08211563282520729
PPEVQRMPSV	10	Oxidation (M)	_PPEVQRM(Oxidation (M))PSV_		PPEVQRM(1)PSV		PPEVQRM(80)PSV	0	0	1			REV__nc|ENSG00000104529|P29692-3|EEF1D	REV__nc|ENSG00000104529|P29692-3|EEF1D	MULTI-MSMS	OvCa9_classI_Rep2	2	578.289794921875	2	578.294973	1154.57539	-5.4887	-0.0031741	-3.6529	-0.0021124	-9.1416	-0.0052866	578.2927598597663	159.22	4.1126	158.99	158.53	162.64	-0.22697					262	82	5	0	0	0	0.3094	1	16196	16196		79.713	8.4169	1	1073400	+		43443	17669	35919	35942	46878	46878		411			0.004288667659466228
PPEVQRMPSV	10	Oxidation (M)	_PPEVQRM(Oxidation (M))PSV_		PPEVQRM(1)PSV		PPEVQRM(80)PSV	0	0	1			REV__nc|ENSG00000104529|P29692-3|EEF1D	REV__nc|ENSG00000104529|P29692-3|EEF1D	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2891235351562	2	578.294973	1154.57539	-7.6021	-0.0043963	-1.6299	-0.00094256	-9.232	-0.0053388	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.3094	1	13827	13827		79.713	10.926	1	1429200	+		43444	17669	35919	35942	46879	46879		411			0.004288667659466228
PPEVQRMPSV	10	Oxidation (M)	_PPEVQRM(Oxidation (M))PSV_		PPEVQRM(1)PSV		PPEVQRM(75)PSV	0	0	1			REV__nc|ENSG00000104529|P29692-3|EEF1D	REV__nc|ENSG00000104529|P29692-3|EEF1D	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.289306640625	2	578.294973	1154.57539	-7.0214	-0.0040605	-2.2037	-0.0012744	-9.2252	-0.0053349	578.2935937226971	160.38	4.1596	158.77	158.05	162.21	-1.6101					391	105	5	0	0	0	0.34811	1	15903	15903		75.043	9.5779	1	1912500	+		43445	17669	35919	35942	46880	46880		411			0.004288667659466228
PPFKIMLLNPI	11	Unmodified	_PPFKIMLLNPI_					0	0	0			REV__tr|A0A7D6VQJ2|A0A7D6VQJ2_9CLOTEamAfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_03515PE=4SV=1	REV__tr|A0A7D6VQJ2|A0A7D6VQJ2_9CLOTEamAfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_03515PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	641.884521484375	2	641.883227	1281.7519	-4.605	-0.0029559	3.1187	0.0020018	-1.4864	-0.00095408	641.8852528126143	150.24	3.761	149.29	147.05	150.81	-0.95119					231	74	4	0	0	0	0.69455	1	12752	12752		31.53	2.3598	1	246170	+		43446	31330	35920	35943	46881	46881					0.12229527667068396
PPFLPPLGLD	10	Unmodified	_PPFLPPLGLD_					0	0	0			REV__TG|p.S2274Lfs*71|1|0.03|ENSG00000042832|chr8:133019639-133019640|-/TG|frameshift_variant	REV__TG|p.S2274Lfs*71|1|0.03|ENSG00000042832|chr8:133019639-133019640|-/TG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.8200073242188	2	533.302593	1064.59063	-1.3695	-0.00073036	-2.6275	-0.0014012	-3.997	-0.0021316	533.3010819710036	52.3	1.1017	49.092	48.742	49.844	-3.208					52	21	3	0	0	0	0.027117	1	3118	3118		10.866	0	1	183630	+		43447	16644	35921	35944	46882	46882					0.060921016254724236
PPFYTLIILT	10	Unmodified	_PPFYTLIILT_					0	0	0		tr|A0A553STN1|A0A553STN1_NIACIThiolreductantABCexportersubunitCydCOS=NialliacirculansOX=1397GN=cydCPE=4SV=1	tr|A0A553STN1|A0A553STN1_NIACIThiolreductantABCexportersubunitCydCOS=NialliacirculansOX=1397GN=cydCPE=4SV=1	tr|A0A553STN1|A0A553STN1_NIACIThiolreductantABCexportersubunitCydCOS=NialliacirculansOX=1397GN=cydCPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3417358398438	2	589.347	1176.67945	-3.0463	-0.0017953	-3.7941	-0.002236	-6.8404	-0.0040314	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.82648	1	14829	14829		15.642	0.77694	1	272220			43448	34508	35922	35945	46883	46883					0.09817516865155085
PPGAEVPVIK	10	Unmodified	_PPGAEVPVIK_					0	0	0			REV__ZFAT|p.T252Hfs*7|1|0.16|ENSG00000066827|chr8:134608760-134608760|T/-|frameshift_variant	REV__ZFAT|p.T252Hfs*7|1|0.16|ENSG00000066827|chr8:134608760-134608760|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	504.77777099609375	2	503.800217	1005.58588	-0.26277	-0.00013238	1.6469	0.0008297	1.3841	0.00069732	503.8009898337432	56.847	1.171	53.502	53.171	54.342	-3.3449					38	22	2	0	0	0	0.026752	1	3745	3745		27.882	0	1	72754	+		43449	16825	35923	35946	46884	46884					0.08331217482714237
PPGASVPPM	9	Unmodified	_PPGASVPPM_					0	0	0			REV__ENSG00000248905|ENST00000616417|FMN1	REV__ENSG00000248905|ENST00000616417|FMN1	MULTI-MSMS	OvCa99_classI_Rep5	1	426.7198486328125	2	426.717839	851.421125	0.27364	0.00011677	4.3462	0.0018546	4.6199	0.0019714	426.7196094906942	31.242	0.73157	31.242	31.076	31.807	0					25	14	2	0	0	0	0.50066	1	1272	1272		42.474	0.078325	1	349270	+		43450	23486	35924	35947	46885	46885					-0.010529179287345869
PPGATHQP	8	Unmodified	_PPGATHQP_					0	0	0			REV__ENST00000333651.10_1_19:3578522-3579050:+|nuORF	REV__ENST00000333651.10_1_19:3578522-3579050:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	402.219970703125	2	402.703577	803.392602	0.84654	0.00034091	0.29252	0.0001178	1.1391	0.0004587	402.70151803003563	69.008	0.84834	66.388	66.118	66.966	-2.6203					17	16	2	0	0	0	0.028476	1	5429	5429		12.959	0	1	6136.2	+		43451	24557	35925	35948	46886	46886					-0.016958995136633348
PPGFIKSTQK	10	Unmodified	_PPGFIKSTQK_					0	0	0		nc|ENSG00000133114|Q8IXQ4-4|GPALPP1;ENSG00000133114|ENST00000379151|GPALPP1	nc|ENSG00000133114|Q8IXQ4-4|GPALPP1	nc|ENSG00000133114|Q8IXQ4-4|GPALPP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.7813110351562	2	551.816399	1101.61824	0.42382	0.00023387	3.312	0.0018276	3.7359	0.0020615	551.8180374055418	113.43	0.92337	111.98	111.66	112.58	-1.4461					25	18	2	0	0	0	0.027118	1	10572	10572		19.104	0	1	29592			43452	4203	35926	35949	46887	46887					0.07150004885693306
PPGGGGPG	8	Unmodified	_PPGGGGPG_					0	0	0		KHSRP|p.E367Afs*119|1|0.05|ENSG00000088247|chr19:6417069-6417070|-/G|frameshift_variant;nc|ENSG00000088247|Q92945|KHSRP;ENSG00000088247|ENST00000600480|KHSRP	KHSRP|p.E367Afs*119|1|0.05|ENSG00000088247|chr19:6417069-6417070|-/G|frameshift_variant	KHSRP|p.E367Afs*119|1|0.05|ENSG00000088247|chr19:6417069-6417070|-/G|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	595.6508178710938	1	595.283451	594.276175	2.9821	0.0017752	4.382	0.0026085	7.3641	0.0043837	595.2872384063979	99.045	0.69093	99.045	98.838	99.529	0					32	16	3	0	0	0	0.028476	1	10986	10986		1.619	0	1	745110			43453	1784	35927	35950	46888	46888					-0.037192180135662056
PPGHLPAHEL	10	Unmodified	_PPGHLPAHEL_					0	0	0		ENST00000532085.1_1_11:118900912-118901290:-|nuORF	ENST00000532085.1_1_11:118900912-118901290:-|nuORF	ENST00000532085.1_1_11:118900912-118901290:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	534.2864990234375	2	534.285266	1066.55598	1.3936	0.00074458	-1.4698	-0.00078531	-0.076224	-4.0725E-05	534.2843679726661	147.02	1.4126	147.02	146.62	148.03	0					66	28	4	0	0	0	0.64063	1	17184	17184		37.159	0	1	1244100			43454	13320	35928	35951	46889	46889					0.025362785373772567
PPGKEGPIGFP	11	Unmodified	_PPGKEGPIGFP_					0	0	0		ENSG00000114270|ENST00000681320|COL7A1;nc|ENSG00000114270|Q02388-2|COL7A1;ENST00000487017.5_1_3:48609337-48621784:-|nuORF	ENSG00000114270|ENST00000681320|COL7A1	ENSG00000114270|ENST00000681320|COL7A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.295166015625	2	548.295299	1094.57605	0.52053	0.00028541	-1.0206	-0.0005596	-0.50008	-0.00027419	548.2950889669573	33.486	4.8857	30.698	30.11	34.996	-2.7881					278	97	6	0	0	0	0.71191	1	1093	1093		25.574	0	1	7055400			43455	3016	35929	35952	46890	46890					0.03254029477329823
PPGLQLIRSV	10	Unmodified	_PPGLQLIRSV_					0	0	0			REV__ENSG00000145362|ENST00000357077|ANK2	REV__ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3313598632812	2	540.332216	1078.64988	-1.5762	-0.00085169	-2.2598	-0.001221	-3.836	-0.0020727	540.3309156564876	138.68	4.2384	138.45	137.13	141.37	-0.22697					227	86	3	0	0	0	0.79917	1	14094	14094		19.104	2.6304	1	66382	+		43456	19961	35930	35953	46891	46891					0.11369997639667417
PPGLQLIRSV	10	Unmodified	_PPGLQLIRSV_					0	0	0			REV__ENSG00000145362|ENST00000357077|ANK2	REV__ENSG00000145362|ENST00000357077|ANK2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.7679443359375	2	540.332216	1078.64988	-1.5937	-0.00086115	0.97232	0.00052538	-0.62142	-0.00033577	540.3328565638377	41.29	1.0412	38.309	38.023	39.064	-2.9804					26	19	2	0	0	0	0.026891	1	1904	1904		31.53	0	1	40098	+		43457	19961	35930	35953	46892	46892					0.11369997639667417
PPGPCVHK	8	Unmodified	_PPGPCVHK_					0	0	0		ENST00000338302.7_1_1:156884783-156884978:+|nuORF	ENST00000338302.7_1_1:156884783-156884978:+|nuORF	ENST00000338302.7_1_1:156884783-156884978:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	417.71746826171875	2	417.718173	833.421793	1.5603	0.00065178	-3.4728	-0.0014507	-1.9125	-0.00079888	417.7165732909185	155.81	4.0147	155.81	153.69	157.7	0					162	79	3	0	0	0	0.67106	2	18301	18253;18301		49.211	12.182	1	421790			43458	10537	35931	35954	46893;46894	46894					-0.001580784890279574
PPGPKEIVLID	11	Unmodified	_PPGPKEIVLID_					0	0	0			REV__ENSG00000133055|ENST00000255416|MYBPH	REV__ENSG00000133055|ENST00000255416|MYBPH	MULTI-MSMS	OvCa9_classI_Rep2	2	589.342529296875	2	589.344989	1176.67542	-3.0463	-0.0017953	-0.38122	-0.00022467	-3.4276	-0.00202	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.69808	1	14955	14955		30.318	1.1477	1	272220	+		43459	19121	35932	35955	46895	46895					0.09415427371436635
PPGPPGQILTI	11	Unmodified	_PPGPPGQILTI_					0	0	0			REV__ENST00000519060.6_1_8:15998591-16021712:-|nuORF	REV__ENST00000519060.6_1_8:15998591-16021712:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3169555664062	2	545.318774	1088.623	-2.8527	-0.0015556	-0.96726	-0.00052747	-3.8199	-0.0020831	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.72064	1	11735	11735		22.58	1.6327	1	337600	+		43460	16620	35933	35956	46896	46896					0.08222889028479585
PPGPRATQ	8	Unmodified	_PPGPRATQ_					0	0	0		AP1B1|p.T737Rfs*121|1|0.13|ENSG00000100280|chr22:29334369-29334370|-/CCCA|frameshift_variant	AP1B1|p.T737Rfs*121|1|0.13|ENSG00000100280|chr22:29334369-29334370|-/CCCA|frameshift_variant	AP1B1|p.T737Rfs*121|1|0.13|ENSG00000100280|chr22:29334369-29334370|-/CCCA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.7038879394531	2	412.224677	822.434801	1.0153	0.00041855	0.61545	0.0002537	1.6308	0.00067225	412.22503856677184	32.335	0.5466	32.335	32.055	32.602	0					22	10	3	0	0	0	0.028476	1	1372	1372		38.806	5.2906	1	129040			43461	97	35934	35957	46897	46897					0.016480758947068352
PPGPVERVVI	10	Unmodified	_PPGPVERVVI_					0	0	0		ENST00000334062.7_1_13:114748536-114748656:-|nuORF	ENST00000334062.7_1_13:114748536-114748656:-|nuORF	ENST00000334062.7_1_13:114748536-114748656:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8157348632812	2	531.818941	1061.62333	-1.1709	-0.00062273	-2.7687	-0.0014725	-3.9397	-0.0020952	531.8172515861532	135.65	2.9373	135.42	134.25	137.18	-0.22697					99	59	3	0	0	0	0.65434	1	13459	13459		35.618	0	1	54137			43462	10475	35935	35958	46898	46898					0.09498308748334239
PPGRCFTRER	10	Unmodified	_PPGRCFTRER_					0	0	0		nc|ENSG00000229214|Q5T6M2|LINC00242	nc|ENSG00000229214|Q5T6M2|LINC00242	nc|ENSG00000229214|Q5T6M2|LINC00242	MULTI-MSMS	OvCa99_classI_Rep5	1	609.8070678710938	2	609.811656	1217.60876	-0.50702	-0.00030919	-4.4797	-0.0027318	-4.9868	-0.003041	609.8088187009937	28.613	0.29977	28.613	28.489	28.789	0					16	5	4	0	0	0	0.67931	1	954	954		32.812	3.6424	1	158800			43463	15328	35936	35959	46899	46899					0.008659133285391363
PPGTPGDEG	9	Unmodified	_PPGTPGDEG_					0	0	0			REV__COL1A2|p.G1111Yfs*17|1|0.05|ENSG00000164692|chr7:94427688-94427689|-/TTATACATACAATAAAATCTCC|frameshift_variant	REV__COL1A2|p.G1111Yfs*17|1|0.05|ENSG00000164692|chr7:94427688-94427689|-/TTATACATACAATAAAATCTCC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.9273376464844	2	413.682507	825.350462	1.3799	0.00057084	0.4823	0.00019952	1.8622	0.00077036	413.6826775198816	45.563	0.51267	45.563	45.332	45.844	0					17	11	2	0	0	0	0.027462	1	3149	3149		23.042	7.4007	1	217070	+		43464	16162	35937	35960	46900	46900					-0.06919919712709088
PPGTTVPREVF	11	Unmodified	_PPGTTVPREVF_					0	0	0			REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	MULTI-MSMS	OvCa99_classI_Rep5	1	600.3246459960938	2	600.324588	1198.63462	1.2087	0.00072562	-1.3087	-0.00078564	-0.099981	-6.0021E-05	600.3236393872913	156.48	2.3289	156.48	156.04	158.37	0					141	46	4	0	0	0	0.68021	1	18385	18385		36.447	0	1	3212700	+		43465	23220	35938	35961	46901	46901					0.043250860517900946
PPHLPSKRLPP	11	Unmodified	_PPHLPSKRLPP_					0	0	0		ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8681640625	2	619.87204	1237.72953	-3.8587	-0.0023919	-0.31006	-0.00019219	-4.1687	-0.0025841	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.69455	1	15152	15152		31.53	3.6476	1	492670			43466	2531	35939	35962	46902	46902					0.1201706431365892
PPHLPSKRLPP	11	Unmodified	_PPHLPSKRLPP_					0	0	0		ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	ENSG00000106125|ENST00000265299|MINDY4	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8683471679688	2	619.87204	1237.72953	-3.6059	-0.0022352	-0.65337	-0.00040501	-4.2593	-0.0026402	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.71498	1	12668	12668		24.519	1.9395	1	664560			43467	2531	35939	35962	46903	46903					0.1201706431365892
PPHLVLKP	8	Unmodified	_PPHLVLKP_					0	0	0			REV__nc|ENSG00000110042|Q9Y2E6-2|DTX4	REV__nc|ENSG00000110042|Q9Y2E6-2|DTX4	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.5716552734375	2	450.786913	899.559273	-0.45395	-0.00020463	-3.9483	-0.0017799	-4.4023	-0.0019845	450.7850001956329	49.596	0.43862	49.596	49.418	49.856	0					15	9	2	0	0	0	0.028476	1	3745	3745		8.8223	0	1	149620	+		43468	17964	35940	35963	46904	46904					0.10547573382018527
PPHQPILFY	9	Unmodified	_PPHQPILFY_					0	0	0		ENST00000515359.6_1_3:49571444-49571636:+|nuORF	ENST00000515359.6_1_3:49571444-49571636:+|nuORF	ENST00000515359.6_1_3:49571444-49571636:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	556.2972412109375	2	556.300384	1110.58622	-3.9321	-0.0021874	-1.8803	-0.001046	-5.8124	-0.0032335	556.2991914868587	146.26	1.5443	145.3	144.9	146.44	-0.95946					66	30	3	0	0	0	0.65476	1	12261	12261		25.45	0.93098	1	177360			43469	13041	35941	35964	46905	46905					0.03534637202551494
PPIARVQQP	9	Unmodified	_PPIARVQQP_					0	0	0		sp|P16785|LTP_HCMVALargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL48PE=1SV=1;sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	sp|P16785|LTP_HCMVALargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL48PE=1SV=1;sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.2594909667969	2	503.295633	1004.57671	-0.97452	-0.00049047	0.36656	0.00018449	-0.60796	-0.00030598	503.2956569655041	44.238	0.44795	44.238	44.08	44.528	0					19	9	3	0	0	0	0.027462	1	3017	3017		24.203	6.8378	1	528020			43470	32899;32910	35942	35965	46906	46906					0.07460868917041807
PPIAVITT	8	Unmodified	_PPIAVITT_					0	0	0		tr|A0A553SS13|A0A553SS13_NIACIBranched-chainaminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_02285PE=3SV=1	tr|A0A553SS13|A0A553SS13_NIACIBranched-chainaminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_02285PE=3SV=1	tr|A0A553SS13|A0A553SS13_NIACIBranched-chainaminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_02285PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	406.2484130859375	2	406.249829	810.485105	0.12737	5.1745E-05	-3.126	-0.00127	-2.9987	-0.0012182	406.2484453732125	140.19	2.0181	139.96	139.4	141.42	-0.22697					109	40	4	0	0	0	0.75991	1	14061	14061		21.702	6.0661	1	304300			43471	34321	35943	35966	46907	46907					0.07228185499832307
PPIAVITT	8	Unmodified	_PPIAVITT_					0	0	0		tr|A0A553SS13|A0A553SS13_NIACIBranched-chainaminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_02285PE=3SV=1	tr|A0A553SS13|A0A553SS13_NIACIBranched-chainaminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_02285PE=3SV=1	tr|A0A553SS13|A0A553SS13_NIACIBranched-chainaminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_02285PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	406.2475891113281	2	406.249829	810.485105	-1.2292	-0.00049936	-1.8965	-0.00077046	-3.1257	-0.0012698	406.24894809520566	140.8	1.576	139.77	139.38	140.96	-1.0339					88	31	4	0	0	0	0.74679	1	11664	11664		28.254	1.4582	1	902300			43472	34321	35943	35966	46908	46908					0.07228185499832307
PPICTRDRGH	10	Unmodified	_PPICTRDRGH_					0	0	0			REV__ENST00000331057.8_1_16:22075722-22095019:+|nuORF	REV__ENST00000331057.8_1_16:22075722-22095019:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	576.3548583984375	2	576.290556	1150.56656	-1.6548	-0.00095364	-2.8575	-0.0016467	-4.5123	-0.0026004	576.288438839548	72.183	1.0226	68.727	68.412	69.434	-3.4563					39	20	3	0	0	0	0.02658	1	5624	5624		45.972	3.108	1	43012	+		43473	22521	35944	35967	46909	46909					-0.0027006207983504282
PPIITPELGF	10	Unmodified	_PPIITPELGF_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-7|BLTP1;REV__nc|ENSG00000138688|Q2LD37-6|BLTP1	REV__nc|ENSG00000138688|Q2LD37-6|BLTP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.3099975585938	2	542.307875	1082.6012	-0.94688	-0.0005135	2.8243	0.0015317	1.8775	0.0010182	542.3090419414774	65.876	1.3524	65.876	65.426	66.779	0					80	33	4	0	0	0	0.027084	1	6064	6064		17.365	0	1	2359000	+		43474	19560;28886	35945	35968	46910	46910					0.06320084279923321
PPILPLHTGT	10	Unmodified	_PPILPLHTGT_					0	0	0			REV__ENST00000421442.2_2_3:184090707-184093318:-|nuORF	REV__ENST00000421442.2_2_3:184090707-184093318:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3035888671875	2	523.305667	1044.59678	-0.69596	-0.0003642	-3.2951	-0.0017244	-3.9911	-0.0020886	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.76627	1	13858	13858		23.042	3.939	1	130240	+		43475	23700	35946	35969	46911	46911					0.0762661985700106
PPINVLPSL	9	Unmodified	_PPINVLPSL_					0	0	0		chr2:70963261-70963572|379|12.15|0.48|4.67|+|ENST00000412314|ATP6V1B1,VAX2;ENSG00000147416|ENST00000276390|ATP6V1B2;ENSG00000116039|ENST00000234396|ATP6V1B1;MPHOSPH10-ATP6V1B1|1|fusion	chr2:70963261-70963572|379|12.15|0.48|4.67|+|ENST00000412314|ATP6V1B1,VAX2	chr2:70963261-70963572|379|12.15|0.48|4.67|+|ENST00000412314|ATP6V1B1,VAX2	MULTI-MSMS	OvCa99_classI_Rep5	1	475.29107666015625	2	475.289485	948.564418	0.8504	0.00040419	1.1666	0.00055448	2.017	0.00095866	475.28997401569427	159.19	1.9374	159.19	158.27	160.21	0					52	39	2	0	0	0	0.14739	1	18656	18656		85.359	16.875	1	73153			43476	446	35947	35970	46912	46912					0.08807832453999254
PPIPRPGLFR	10	Unmodified	_PPIPRPGLFR_					0	0	0		ENST00000219235.4_1_16:57399064-57399196:+|nuORF	ENST00000219235.4_1_16:57399064-57399196:+|nuORF	ENST00000219235.4_1_16:57399064-57399196:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	575.3450317382812	2	575.3482	1148.68185	-6.2917	-0.0036199	1.4148	0.00081402	-4.8769	-0.0028059	575.3489585356984	154.97	1.0558	153.9	153.56	154.61	-1.073					68	25	4	0	0	0	0.81992	1	13339	13339		16.473	0.83134	1	137860			43477	9682	35948	35971	46913	46913					0.11345410113472099
PPIVARLVSP	10	Unmodified	_PPIVARLVSP_					0	0	0			REV__ENST00000395784.1_1_5:96271114-96272330:+|nuORF	REV__ENST00000395784.1_1_5:96271114-96272330:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	524.8267822265625	2	524.829309	1047.64407	-6.4209	-0.0033699	2.2692	0.001191	-4.1517	-0.0021789	524.8303693371411	156.49	1.5557	155.32	154.95	156.51	-1.1687					100	33	5	0	0	0	0.71192	1	13536	13536		29.15	10.825	1	1025700	+		43478	25319	35949	35972	46914	46914					0.12214899127980061
PPKHKVVSTA	10	Unmodified	_PPKHKVVSTA_					0	0	0			REV__XPO1-USP34|3|fusion;REV__ENST00000484179.5_1_2:61493011-61508284:-|nuORF	REV__XPO1-USP34|3|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.8167114257812	2	532.316566	1062.61858	1.5805	0.0008413	1.9117	0.0010176	3.4921	0.0018589	532.3174127699824	136.17	0.59082	134.63	134.15	134.74	-1.5437					19	11	2	0	0	0	0.026956	1	13190	13190		19.997	0	1	63071	+		43479	32759;26544	35950	35973	46915	46915					0.08977424605586748
PPKIKGTPME	10	Unmodified	_PPKIKGTPME_					0	0	0		tr|A0A7D6VQU9|A0A7D6VQU9_9CLOTL-aspartateoxidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16635PE=3SV=1	tr|A0A7D6VQU9|A0A7D6VQU9_9CLOTL-aspartateoxidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16635PE=3SV=1	tr|A0A7D6VQU9|A0A7D6VQU9_9CLOTL-aspartateoxidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16635PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	549.3023681640625	2	549.30481	1096.59507	-0.36233	-0.00019903	-3.0103	-0.0016536	-3.3727	-0.0018526	549.3030294617095	131.39	0.83014	130.27	130.01	130.84	-1.1249					30	16	2	0	0	0	0.73378	1	10494	10494		26.693	1.1189	1	63952			43480	34870	35951	35974	46916	46916					0.050632427767368426
PPKKKPKTTNI	11	Unmodified	_PPKKKPKTTNI_					0	0	0		nc|ENSG00000117222|Q15291-2|RBBP5;ENSG00000117222|ENST00000264515|RBBP5	nc|ENSG00000117222|Q15291-2|RBBP5	nc|ENSG00000117222|Q15291-2|RBBP5	MULTI-MSMS	OvCa9_classI_Rep2	2	626.3922729492188	2	626.392805	1250.77106	-5.6586	-0.0035445	-3.473	-0.0021755	-9.1316	-0.00572	626.8920656002647	163.54	1.1058	163.31	162.97	164.08	-0.22697					56	36	2	0	0	0	0.72466	1	16637	16637		19.997	1.7347	1	65883			43481	3244	35952	35975	46917	46917					0.15570200282331825
PPKKPSPTI	9	Unmodified	_PPKKPSPTI_					0	0	0		nc|ENSG00000163406|Q16348-2|SLC15A2;ENSG00000163406|ENST00000489711|SLC15A2	nc|ENSG00000163406|Q16348-2|SLC15A2	nc|ENSG00000163406|Q16348-2|SLC15A2	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.73187255859375	2	482.794935	963.575317	-0.3752	-0.00018115	-2.569	-0.0012403	-2.9442	-0.0014214	482.79357209743114	35.962	0.27514	35.962	35.799	36.074	0					9	5	2	0	0	0	0.027441	1	1850	1850		68.787	13.283	1	52343			43482	6301	35953	35976	46918	46918					0.09207234828284072
PPKLLGKFDS	10	Unmodified	_PPKLLGKFDS_					0	0	0			REV__nc|ENSG00000163521|Q6UWU2-2|GLB1L	REV__nc|ENSG00000163521|Q6UWU2-2|GLB1L	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.2584228515625	2	551.318774	1100.623	-0.32616	-0.00017982	-4.1366	-0.0022806	-4.4628	-0.0024604	551.3163798082346	67.71	1.0859	65.049	64.495	65.581	-2.661					36	21	2	0	0	0	0.027088	1	5359	5359		19.997	10.814	1	21848	+		43483	20846	35954	35977	46919	46919					0.07670889028463534
PPKLLGKFDS	10	Unmodified	_PPKLLGKFDS_					0	0	0			REV__nc|ENSG00000163521|Q6UWU2-2|GLB1L	REV__nc|ENSG00000163521|Q6UWU2-2|GLB1L	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	551.318774	1100.623	0.27996	0.00015435	-5.2398	-0.0028888	-4.9598	-0.0027344	551.8175247355014	68.552	0.83588	65.061	64.72	65.556	-3.4902	0.0061911	-0.00063726	NaN	19.997	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37147	+		43484	20846	35954	35977							0.07670889028463534
PPKPVNQT	8	Unmodified	_PPKPVNQT_					0	0	0			REV__nc|ENSG00000197321|O95425-4|SVIL	REV__nc|ENSG00000197321|O95425-4|SVIL	MULTI-SECPEP	OvCa99_classI_Rep5	1	441.2318115234375	2	440.747985	879.481417	3.3988	0.001498	-1.208	-0.00053242	2.1908	0.00096558	440.74726580601686	77.205	0.3783	77.205	77.044	77.422	0					10	8	2	0	0	0	0.028476	1	7778	7778		18.324	0	1	178940	+		43485	22911	35955	35978	46920	46920					0.03685515725987898
PPKRRGGG	8	Unmodified	_PPKRRGGG_					0	0	0		ENSG00000142661|ENST00000374434|MYOM3;nc|ENSG00000142661|Q5VTT5-2|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	MULTI-MSMS	OvCa9_classI_Rep3	3	412.7458801269531	2	412.746111	823.477669	-0.0041108	-1.6967E-06	0.23932	9.8779E-05	0.23521	9.7083E-05	412.74611275073886	135.39	1.6252	134.28	133.62	135.24	-1.1076					83	32	4	0	0	0	0.73288	1	10971	10971		35.201	9.7505	1	589310			43486	4988	35956	35979	46921	46921					0.05886890742817741
PPKRRGGG	8	Unmodified	_PPKRRGGG_					0	0	0		ENSG00000142661|ENST00000374434|MYOM3;nc|ENSG00000142661|Q5VTT5-2|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	ENSG00000142661|ENST00000374434|MYOM3	MULTI-MSMS	OvCa9_classI_Rep4_	4	412.7463684082031	2	412.746111	823.477669	3.1505	0.0013004	-2.8121	-0.0011607	0.33847	0.0001397	412.74482870844463	135.72	2.2055	134.18	133.51	135.72	-1.5437					107	44	4	0	0	0	0.74816	1	13134	13134		15.636	1.8609	1	1010100			43487	4988	35956	35979	46922	46922					0.05886890742817741
PPKSPLSPELI	11	Unmodified	_PPKSPLSPELI_					0	0	0		ENST00000469979.6_1_8:133823271-133827181:+|nuORF;ENST00000361997.9_1_8:133790074-133829825:+|nuORF;ENST00000395383.5_1_8:133790074-133836319:+|nuORF;nc|ENSG00000129292|A8MW92-4|PHF20L1;MED4-PHF20L1|2|fusion;ENSG00000129292|ENST00000395386|PHF20L1;MED4-PHF20L1|1|fusion	ENST00000469979.6_1_8:133823271-133827181:+|nuORF	ENST00000469979.6_1_8:133823271-133827181:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3422241210938	2	589.344989	1176.67542	-5.1334	-0.0030254	1.6192	0.00095427	-3.5142	-0.0020711	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.72324	1	12498	12498		21.686	2.3258	1	589610			43488	3927	35957	35980	46923	46923					0.09415427371436635
PPLAAPRLSP	10	Unmodified	_PPLAAPRLSP_					0	0	0		ENST00000549412.5_2_12:49760692-49761130:+|nuORF	ENST00000549412.5_2_12:49760692-49761130:+|nuORF	ENST00000549412.5_2_12:49760692-49761130:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8040466308594	2	509.805834	1017.59712	-0.41042	-0.00020923	-3.6368	-0.0018541	-4.0473	-0.0020633	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.81992	1	13664	13664		16.473	0.83134	1	150140			43489	13572	35958	35981	46924	46924					0.08902039576844345
PPLADALQLL	10	Unmodified	_PPLADALQLL_					0	0	0		ENST00000320017.10_1_3:47459280-47460886:-|nuORF;ENST00000265565.9_1_3:47459280-47460886:-|nuORF	ENST00000320017.10_1_3:47459280-47460886:-|nuORF	ENST00000320017.10_1_3:47459280-47460886:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.2778930664062	2	525.813325	1049.6121	-1.6294	-0.00085677	-3.5681	-0.0018761	-5.1975	-0.0027329	525.8124354399449	42.783	0.99731	39.776	39.539	40.536	-3.0074					49	18	3	0	0	0	0.027118	1	1985	1985		19.104	0	1	68316			43490	9952	35959	35982	46925	46925					0.08927486654192762
PPLALQLSLA	10	Unmodified	_PPLALQLSLA_					0	0	0			REV__ENST00000590882.1_1_19:19459915-19460169:+|nuORF	REV__ENST00000590882.1_1_19:19459915-19460169:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	511.814208984375	2	511.815867	1021.61718	-1.0737	-0.00054956	-1.8225	-0.00093277	-2.8962	-0.0014823	511.81478887315143	50.018	2.3782	47.224	46.637	49.015	-2.794					105	47	4	0	0	0	0.69073	1	3214	3214		31.53	7.3271	1	277830	+		43491	27922	35960	35983	46926	46926					0.10723790516794907
PPLAVPLL	8	Unmodified	_PPLAVPLL_					0	0	0			REV__nc|ENSG00000124574|Q5T3U5-2|ABCC10	REV__nc|ENSG00000124574|Q5T3U5-2|ABCC10	MULTI-SECPEP	OvCa99_classI_Rep5	1	409.53765869140625	2	410.270564	818.526576	0.50297	0.00020635	-3.8258	-0.0015696	-3.3228	-0.0013632	410.2688459009227	50.663	0.26593	50.663	50.509	50.775	0					10	5	2	0	0	0	0.028476	1	3863	3863		16.705	0	1	120040	+		43492	18695	35961	35984	46927	46927					0.11005366259178118
PPLFCISPL	9	Unmodified	_PPLFCISPL_					0	0	0		ENST00000557815.1_1_15:70350468-70350999:-|nuORF	ENST00000557815.1_1_15:70350468-70350999:-|nuORF	ENST00000557815.1_1_15:70350468-70350999:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	493.77203369140625	2	493.772614	985.530675	-1.0638	-0.00052526	0.57393	0.00028339	-0.48984	-0.00024187	493.7727477458053	34.251	1.0885	31.542	31.168	32.257	-2.7097					41	21	3	0	0	0	0.6959	1	1308	1308		19.36	0	1	147330			43493	13688	35962	35985	46928	46928					0.03733087690591219
PPLFLAARVP	10	Unmodified	_PPLFLAARVP_					0	0	0			REV__ENSG00000205669|ENST00000645972|ACOT6	REV__ENSG00000205669|ENST00000645972|ACOT6	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.8309326171875	2	540.831852	1079.64915	-2.0025	-0.001083	1.179	0.00063766	-0.82347	-0.00044536	540.8325567076699	124.8	3.4681	123.41	123.02	126.49	-1.3908					189	68	4	0	0	0	0.69986	1	11978	11978		30.504	4.9296	1	9581200	+		43494	23222	35963	35986	46929	46929					0.11251202990615639
PPLGRSGAE	9	Unmodified	_PPLGRSGAE_					0	0	0		ENST00000267205.6_1_12:122216327-122216612:-|nuORF	ENST00000267205.6_1_12:122216327-122216612:-|nuORF	ENST00000267205.6_1_12:122216327-122216612:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	442.2351379394531	2	442.235242	882.45593	0.32938	0.00014566	-0.3863	-0.00017083	-0.056917	-2.5171E-05	442.2349881641812	53.455	1.2924	50.641	50.28	51.573	-2.8139					56	25	3	0	0	0	0.36502	1	3617	3617		55.504	11.387	1	308550			43495	9965	35964	35987	46930	46930					0.010000412035651607
PPLHQALVL	9	Unmodified	_PPLHQALVL_					0	0	0		ENSG00000107872|ENST00000369956|FBXL15	ENSG00000107872|ENST00000369956|FBXL15	ENSG00000107872|ENST00000369956|FBXL15	MULTI-MSMS	OvCa9_classI_Rep2	2	494.3004455566406	2	494.302927	986.591301	-3.5514	-0.0017554	-0.56102	-0.00027732	-4.1124	-0.0020328	494.3024982316327	153.87	1.3713	153.64	153.28	154.65	-0.22696					70	29	4	0	0	0	0.59983	1	15658	15658		31.955	7.7521	1	375650			43496	2623	35965	35988	46931	46931					0.09746941065179726
PPLIGKSE	8	Unmodified	_PPLIGKSE_					0	0	0			REV__tr|A0A553SR55|A0A553SR55_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_00470PE=4SV=1	REV__tr|A0A553SR55|A0A553SR55_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_00470PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	420.695556640625	2	420.744911	839.475269	-0.40445	-0.00017017	3.8807	0.0016328	3.4763	0.0014626	420.7457609324516	50.487	0.53123	50.487	50.332	50.863	0					17	11	2	0	0	0	0.028476	1	3835	3835		8.2313	0	1	136250	+		43497	30692	35966	35989	46932	46932					0.04910997494482672
PPLKKKCERL	10	Unmodified	_PPLKKKCERL_					0	0	0		ENST00000282488.11_1_3:151986849-152017245:+|nuORF	ENST00000282488.11_1_3:151986849-152017245:+|nuORF	ENST00000282488.11_1_3:151986849-152017245:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3699951171875	2	606.368275	1210.722	-2.264	-0.0013728	4.3533	0.0026397	2.0893	0.0012669	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.78463	1	12597	12597		20.947	6.0821	1	205770			43498	10057	35967	35990	46933	46933					0.12506588721726075
PPLLGPLLSPF	11	Unmodified	_PPLLGPLLSPF_					0	0	0		ENST00000301043.10_2_17:27044340-27045285:-|nuORF	ENST00000301043.10_2_17:27044340-27045285:-|nuORF	ENST00000301043.10_2_17:27044340-27045285:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	575.84375	2	575.847167	1149.67978	-4.018	-0.0023138	-2.943	-0.0016947	-6.9609	-0.0040084	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.70865	1	12299	12299		26.693	4.733	1	445630			43499	10181	35968	35991	46934	46934					0.11092936584987001
PPLLKVDS	8	Unmodified	_PPLLKVDS_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3	REV__nc|ENSG00000198838|Q15413-2|RYR3	MULTI-MSMS	OvCa9_classI_Rep3	3	434.7592468261719	2	434.760561	867.506569	-1.3377	-0.00058158	-1.6289	-0.00070818	-2.9666	-0.0012898	434.7597358333452	139.11	1.8707	138.05	137.63	139.51	-1.0595					91	37	4	0	0	0	0.74971	1	11417	11417		26.796	2.5934	1	610970	+		43500	23074	35969	35992	46935	46935					0.06751570528570028
PPLLLVWSRSL	11	Unmodified	_PPLLLVWSRSL_					0	0	0		ENST00000517609.5_1_8:124429070-124447771:+|nuORF;ENST00000519199.5_2_8:124429089-124447771:+|nuORF	ENST00000517609.5_1_8:124429070-124447771:+|nuORF	ENST00000517609.5_1_8:124429070-124447771:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	640.8904418945312	2	640.889898	1279.76524	-0.17161	-0.00010998	0.27241	0.00017459	0.1008	6.4604E-05	640.8899625944715	132.12	1.093	131	130.64	131.73	-1.1249					68	21	4	0	0	0	0.71191	1	10575	10575		25.574	0	1	271940			43501	13059	35970	35993	46936	46936					0.13655101770655165
PPLLMLPLP	9	Unmodified	_PPLLMLPLP_					0	0	0			REV__ENSG00000203989|ENST00000371402|RHOXF2B	REV__ENSG00000203989|ENST00000371402|RHOXF2B	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.8067321777344	2	495.806457	989.598361	-0.52816	-0.00026187	0.012422	6.1588E-06	-0.51574	-0.00025571	495.80638684951504	144.26	1.4618	142.83	142.48	143.94	-1.4357					68	27	4	0	0	0	0.68641	1	14164	14164		21.702	0.7554	1	117760	+		43502	19029	35971	35994	46937	46937					0.10314537621388808
PPLLQTSL	8	Unmodified	_PPLLQTSL_					0	0	0			REV__ENSG00000198203|ENST00000251481|SULT1C2	REV__ENSG00000198203|ENST00000251481|SULT1C2	MULTI-MSMS	OvCa9_classI_Rep3	3	434.7596130371094	2	434.760561	867.506569	-1.3377	-0.00058158	-1.6289	-0.00070818	-2.9666	-0.0012898	434.7597358333452	139.11	1.8707	138.05	137.63	139.51	-1.0595					91	37	4	0	0	0	0.73626	1	11423	11423		33.516	1.5607	1	610970	+		43503	23000	35972	35995	46938	46938					0.06751570528570028
PPLLRQLLL	9	Unmodified	_PPLLRQLLL_					0	0	0			REV__ENST00000503692.5_1_4:4420925-4421102:-|nuORF	REV__ENST00000503692.5_1_4:4420925-4421102:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.278076171875	2	531.855327	1061.6961	-1.1281	-0.00059998	0.5821	0.00030959	-0.54599	-0.00029039	531.8555813929564	58.664	0.90125	55.272	55.101	56.002	-3.392					31	17	3	0	0	0	0.027462	1	3911	3911		24.203	2.2429	1	36435	+		43504	26847	35973	35996	46939	46939					0.16772062541758714
PPLLRQLLL	9	Unmodified	_PPLLRQLLL_					0	0	0			REV__ENST00000503692.5_1_4:4420925-4421102:-|nuORF	REV__ENST00000503692.5_1_4:4420925-4421102:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	531.855327	1061.6961	-1.4878	-0.0007913	1.4297	0.0007604	-0.058099	-3.09E-05	531.8559320005996	57.874	0.75412	55.082	54.873	55.627	-2.7921	-0.095161	0.00033012	NaN	11.511	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42534	+		43505	26847	35973	35996							0.16772062541758714
PPLLTQSPIKG	11	Unmodified	_PPLLTQSPIKG_					0	0	0			REV__ENSG00000163012|ENST00000295131|ZSWIM2	REV__ENSG00000163012|ENST00000295131|ZSWIM2	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8423461914062	2	575.845156	1149.67576	-4.018	-0.0023138	0.54994	0.00031668	-3.4681	-0.0019971	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.7246	1	12107	12107		20.837	0.84038	1	445630	+		43506	20799	35974	35997	46940	46940					0.10690847091268552
PPLNDVSIIPL	11	Unmodified	_PPLNDVSIIPL_					0	0	0			REV__ENSG00000196739|ENST00000356083|COL27A1	REV__ENSG00000196739|ENST00000356083|COL27A1	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3421020507812	2	589.344989	1176.67542	-5.1334	-0.0030254	1.6192	0.00095427	-3.5142	-0.0020711	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.7046	1	12470	12470		28.081	2.5074	1	589610	+		43507	22861	35975	35998	46941	46941					0.09415427371436635
PPLPAKGIISN	11	Unmodified	_PPLPAKGIISN_					0	0	0		ENST00000432329.6_1_2:208467595-208467667:+|nuORF	ENST00000432329.6_1_2:208467595-208467667:+|nuORF	ENST00000432329.6_1_2:208467595-208467667:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	553.829833984375	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.69808	1	14384	14384		30.318	1.1477	1	245610			43508	11808	35976	35999	46942	46942					0.10094577919835501
PPLPAQKVCLR	11	Unmodified	_PPLPAQKVCLR_					0	0	0		ENSG00000171206|ENST00000643721|TRIM8	ENSG00000171206|ENST00000643721|TRIM8	ENSG00000171206|ENST00000643721|TRIM8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	611.31201171875	2	611.36045	1220.70635	0.0025925	1.5849E-06	-0.43892	-0.00026834	-0.43633	-0.00026675	611.3601467890888	76.73	0.96059	73.791	73.598	74.558	-2.9389					27	19	2	0	0	0	0.025315	1	6087	6087		64.207	5.4253	1	44275			43509	7182	35977	36000	46943	46943					0.10482302204650296
PPLPAQKVCLR	11	Unmodified	_PPLPAQKVCLR_					0	0	0		ENSG00000171206|ENST00000643721|TRIM8	ENSG00000171206|ENST00000643721|TRIM8	ENSG00000171206|ENST00000643721|TRIM8	MULTI-MATCH	OvCa9_classI_Rep3	3		2	611.36045	1220.70635	0.73518	0.00044946	-0.89862	-0.00054938	-0.16344	-9.9923E-05	611.3598522311416	76.124	1.0385	73.752	73.467	74.505	-2.3715	-0.019226	-0.00031227	NaN	64.207	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43190			43510	7182	35977	36000							0.10482302204650296
PPLPARSS	8	Unmodified	_PPLPARSS_					0	0	0		LAMA5-C20orf151|1|fusion;ENSG00000130701|ENST00000252998|RBBP8NL	LAMA5-C20orf151|1|fusion	LAMA5-C20orf151|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	411.90728759765625	2	412.734877	823.455202	1.4611	0.00060306	-0.82437	-0.00034025	0.63675	0.00026281	412.7342544249202	36.823	1.1961	33.93	33.695	34.891	-2.8925					57	23	4	0	0	0	0.028476	1	1293	1293		8.2313	0	1	130370			43511	14793	35978	36001	46944	46944					0.036412465545254236
PPLPCTPHHPQ	11	Unmodified	_PPLPCTPHHPQ_					0	0	0			REV__ENST00000341184.6_1_22:39886931-39887237:+|nuORF	REV__ENST00000341184.6_1_22:39886931-39887237:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	408.7319030761719	3	408.537847	1222.59171	-0.084569	-3.455E-05	2.4018	0.00098124	2.3173	0.00094669	408.5388280345766	50.825	0.8911	48.031	47.63	48.521	-2.794					24	17	2	0	0	0	0.026224	1	3295	3295		13.508	3.8618	1	19176	+		43512	24635	35979	36002	46945	46945					-0.010680072772856875
PPLPEPFLRR	10	Unmodified	_PPLPEPFLRR_					0	0	0			REV__ENSG00000187690|ENST00000342995|EZHIP	REV__ENSG00000187690|ENST00000342995|EZHIP	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3556518554688	2	611.358765	1220.70298	-3.1571	-0.0019301	-1.2176	-0.00074436	-4.3747	-0.0026745	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.67931	2	12672	12672;12696		32.812	3.6424	1	666990	+		43513	22656	35980	36003	46946;46947	46946					0.10145375422303005
PPLPEPFLRR	10	Unmodified	_PPLPEPFLRR_					0	0	0			REV__ENSG00000187690|ENST00000342995|EZHIP	REV__ENSG00000187690|ENST00000342995|EZHIP	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3543701171875	2	611.358765	1220.70298	-2.725	-0.001666	-1.8334	-0.0011209	-4.5584	-0.0027868	611.3575283211214	150.83	4.6872	149.39	148.02	152.71	-1.4344					404	109	6	0	0	0	0.72319	1	14852	14852		27.882	5.3026	1	435030	+		43514	22656	35980	36003	46948	46948					0.10145375422303005
PPLPINSKIQ	10	Unmodified	_PPLPINSKIQ_					0	0	0		ENSG00000143278|ENST00000367412|F13B	ENSG00000143278|ENST00000367412|F13B	ENSG00000143278|ENST00000367412|F13B	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8297119140625	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.67931	1	14354	14354		32.812	2.4947	1	245610			43515	5027	35981	36004	46949	46949					0.10094577919812764
PPLPPNLTGLA	11	Unmodified	_PPLPPNLTGLA_					0	0	0			REV__ENSG00000154447|ENST00000284637|SH3RF1	REV__ENSG00000154447|ENST00000284637|SH3RF1	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3169555664062	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.7046	1	14199	14199		28.081	3.5623	1	202430	+		43516	20383	35982	36005	46950	46950					0.08222889028479585
PPLPPNMTFG	10	Unmodified	_PPLPPNMTFG_					0	0	0		ENSG00000188523|ENST00000393216|CFAP77;nc|ENSG00000188523|Q6ZQR2|CFAP77	ENSG00000188523|ENST00000393216|CFAP77	ENSG00000188523|ENST00000393216|CFAP77	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3007202148438	2	535.770603	1069.52665	0.073031	3.9128E-05	0.61406	0.000329	0.68709	0.00036812	536.2711283567965	31.242	0.18874	31.242	31.076	31.264	0					5	3	2	0	0	0	0.026752	1	1248	1248		53.351	26.659	1	17260			43517	8475	35983	36006	46951	46951					-0.0053300180311453005
PPLPQLPTLTT	11	Unmodified	_PPLPQLPTLTT_					0	0	0			REV__ENSG00000169856|ENST00000305901|ONECUT1	REV__ENSG00000169856|ENST00000305901|ONECUT1	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3414306640625	2	589.344989	1176.67542	-5.1334	-0.0030254	1.6192	0.00095427	-3.5142	-0.0020711	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.7046	1	12378	12378		28.081	1.3886	1	589610	+		43518	18450	35984	36007	46952	46952					0.09415427371413898
PPLRRSQRL	9	Unmodified	_PPLRRSQRL_					0	0	0			REV__ENST00000225983.10_1_17:42169891-42170465:-|nuORF	REV__ENST00000225983.10_1_17:42169891-42170465:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	561.8453369140625	2	561.846356	1121.67816	-3.2197	-0.001809	1.8948	0.0010646	-1.3249	-0.00074438	561.8472802195274	152.47	1.17	152.24	151.83	153	-0.22697					70	23	4	0	0	0	0.64427	1	15488	15488		26.693	1.1189	1	142980	+		43519	23766	35985	36008	46953	46953					0.12218740339608303
PPLSSSIIV	9	Unmodified	_PPLSSSIIV_					0	0	0		nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2;ENSG00000253910|ENST00000522605|PCDHGB2	nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	MULTI-MSMS	OvCa9_classI_Rep3	3	456.7725830078125	2	456.773668	911.532783	-2.6183	-0.001196	-0.38222	-0.00017459	-3.0005	-0.0013706	456.77340273142477	142.71	1.7302	141.7	141.28	143.01	-1.0106					71	34	3	0	0	0	0.67509	1	11874	11874		23.042	2.5607	1	453300			43520	9440	35986	36009	46954	46954					0.07347839700059922
PPLVRRMIGLS	11	Unmodified	_PPLVRRMIGLS_					0	0	0			REV__ENSG00000072080|ENST00000168148|SPP2	REV__ENSG00000072080|ENST00000168148|SPP2	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8684692382812	2	619.873725	1237.7329	-3.8587	-0.0023919	-3.029	-0.0018776	-6.8877	-0.0042695	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.70142	1	15188	15188		29.17	4.6509	1	492670	+		43521	16910	35987	36010	46955	46955					0.12353991096006212
PPLVRRMIGLS	11	Unmodified	_PPLVRRMIGLS_					0	0	0			REV__ENSG00000072080|ENST00000168148|SPP2	REV__ENSG00000072080|ENST00000168148|SPP2	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8693237304688	2	619.873725	1237.7329	-2.7857	-0.0017268	-4.1738	-0.0025872	-6.9595	-0.004314	619.8709153162803	147.4	3.9416	146.45	144.36	148.3	-0.9512					241	78	4	0	0	0	0.69808	1	12392	12392		30.318	8.3578	1	225770	+		43522	16910	35987	36010	46956	46956					0.12353991096006212
PPLVRRMIGLS	11	Unmodified	_PPLVRRMIGLS_					0	0	0			REV__ENSG00000072080|ENST00000168148|SPP2	REV__ENSG00000072080|ENST00000168148|SPP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8690795898438	2	619.873725	1237.7329	-3.1194	-0.0019336	-3.9204	-0.0024301	-7.0397	-0.0043637	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.71498	1	15034	15034		24.519	0.31644	1	806750	+		43523	16910	35987	36010	46957	46957					0.12353991096006212
PPLVRSLFTRP	11	Unmodified	_PPLVRSLFTRP_					0	0	0			REV__ENST00000432148.5_1_9:71160720-71160887:-|nuORF	REV__ENST00000432148.5_1_9:71160720-71160887:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8805541992188	2	641.885147	1281.75574	-1.8585	-0.0011929	-2.0743	-0.0013315	-3.9328	-0.0025244	641.8836457762243	148.91	0.99602	147.48	146.88	147.87	-1.4344					50	20	3	0	0	0	0.72479	1	14652	14652		18.262	0.89712	1	64864	+		43524	25731	35988	36011	46958	46958					0.12613333485114708
PPMMPILAKLK	11	Unmodified	_PPMMPILAKLK_					0	0	0			REV__ENST00000300403.10_1_20:30345217-30345373:+|nuORF	REV__ENST00000300403.10_1_20:30345217-30345373:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8685913085938	2	619.871805	1237.72906	-3.8587	-0.0023919	0.068254	4.2308E-05	-3.7904	-0.0023496	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.72459	1	15128	15128		20.947	0	1	492670	+		43525	24233	35989	36012	46959	46959					0.11970185277914425
PPMMPILAKLK	11	Unmodified	_PPMMPILAKLK_					0	0	0			REV__ENST00000300403.10_1_20:30345217-30345373:+|nuORF	REV__ENST00000300403.10_1_20:30345217-30345373:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8697509765625	2	619.871805	1237.72906	-2.7857	-0.0017268	-1.0766	-0.00066733	-3.8623	-0.0023941	619.8709153162803	147.4	3.9416	146.45	144.36	148.3	-0.9512					241	78	4	0	0	0	0.72459	1	12386	12386		20.947	0.95016	1	225770	+		43526	24233	35989	36012	46960	46960					0.11970185277914425
PPMPIGPL	8	Unmodified	_PPMPIGPL_					0	0	0			REV__ENSG00000087365|ENST00000322535|SF3B2;REV__ENST00000531589.5_1_11:65819891-65822828:+|nuORF	REV__ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	OvCa99_classI_Rep5	1	411.2352600097656	2	411.233125	820.451696	1.2008	0.0004938	3.7631	0.0015475	4.9639	0.0020413	411.2345284787589	46.35	0.74059	46.35	46.112	46.852	0					35	16	3	0	0	0	0.64315	1	3266	3266		54.895	4.87	1	1275000	+		43527	17166;27217	35990	36013	46961	46961					0.034288604563016634
PPMPIGPL	8	Unmodified	_PPMPIGPL_					0	0	0			REV__ENSG00000087365|ENST00000322535|SF3B2;REV__ENST00000531589.5_1_11:65819891-65822828:+|nuORF	REV__ENSG00000087365|ENST00000322535|SF3B2	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	411.233125	820.451696	1.2008	0.0004938	3.7631	0.0015475	4.9639	0.0020413	411.2345284787589	46.35	0.74059	46.35	46.112	46.852	0	0	0	NaN	54.895	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1275000	+		43528	17166;27217	35990	36013							0.034288604563016634
PPMQLKQK	8	Unmodified	_PPMQLKQK_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400	REV__nc|ENSG00000183495|Q96L91-4|EP400	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.2822265625	2	485.281137	968.547722	0.7704	0.00037386	3.1018	0.0015052	3.8722	0.0018791	485.28250543597454	33.895	1.5942	31.106	30.706	32.301	-2.7881					60	31	3	0	0	0	0.74971	1	955	955		26.796	1.3459	1	135770	+		43529	22365	35991	36014	46962	46962					0.062190082963979876
PPMRPIDIP	9	Unmodified	_PPMRPIDIP_					0	0	0		tr|A0A7D6VXH1|A0A7D6VXH1_9CLOTEpoxidehydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12855PE=3SV=1	tr|A0A7D6VXH1|A0A7D6VXH1_9CLOTEpoxidehydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12855PE=3SV=1	tr|A0A7D6VXH1|A0A7D6VXH1_9CLOTEpoxidehydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12855PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.360107421875	2	518.28642	1034.55829	1.937	0.0010039	-1.1665	-0.00060457	0.7705	0.00039934	518.2858498307223	136.94	0.58322	135.4	135.18	135.76	-1.5437					19	11	2	0	0	0	0.027433	1	13312	13312		60.972	26.799	1	37999			43530	35280	35992	36015	46963	46963					0.0423899095080742
PPNIQKGLFVI	11	Unmodified	_PPNIQKGLFVI_					0	0	0		tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	613.8443603515625	2	613.368798	1224.72304	-1.1174	-0.00068535	-2.3211	-0.0014237	-3.4385	-0.002109	613.3673554994577	60.033	1.4629	57.263	56.62	58.083	-2.7702					83	27	4	0	0	0	0.025496	1	4455	4455		32.812	4.7309	1	327920			43531	35399	35993	36016	46964	46964					0.11967126362287672
PPNLILTT	8	Unmodified	_PPNLILTT_					0	0	0		ENST00000375311.1_1_10:31138210-31139252:-|nuORF	ENST00000375311.1_1_10:31138210-31139252:-|nuORF	ENST00000375311.1_1_10:31138210-31139252:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	434.75970458984375	2	434.760561	867.506569	-0.54476	-0.00023684	-2.3576	-0.001025	-2.9023	-0.0012618	434.7594502813862	138.35	2.0585	138.12	137.54	139.6	-0.22697					104	41	4	0	0	0	0.74679	1	13826	13826		28.254	6.5519	1	279250			43532	11056	35994	36017	46965	46965					0.06751570528570028
PPNLILTT	8	Unmodified	_PPNLILTT_					0	0	0		ENST00000375311.1_1_10:31138210-31139252:-|nuORF	ENST00000375311.1_1_10:31138210-31139252:-|nuORF	ENST00000375311.1_1_10:31138210-31139252:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	434.75872802734375	2	434.760561	867.506569	-1.3377	-0.00058158	-1.6289	-0.00070818	-2.9666	-0.0012898	434.7597358333452	139.11	1.8707	138.05	137.63	139.51	-1.0595					91	37	4	0	0	0	0.74679	1	11429	11429		28.254	1.4582	1	610970			43533	11056	35994	36017	46966	46966					0.06751570528570028
PPNLVKKANER	11	Unmodified	_PPNLVKKANER_					0	0	0			REV__ENSG00000095951|ENST00000379388|HIVEP1	REV__ENSG00000095951|ENST00000379388|HIVEP1	MULTI-MSMS	OvCa9_classI_Rep2	2	633.368408203125	2	633.369861	1264.72517	-4.5141	-0.0028591	3.4388	0.002178	-1.0753	-0.00068108	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.72064	1	15558	15558		22.58	3.4761	1	369460	+		43534	17299	35995	36018	46967	46967					0.1033955510006308
PPNNKPLIT	9	Unmodified	_PPNNKPLIT_					0	0	0			REV__ENST00000404284.6_1_22:35717823-35727385:+|nuORF	REV__ENST00000404284.6_1_22:35717823-35727385:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.2713623046875	2	497.290017	992.565481	1.1739	0.00058375	-1.7661	-0.00087827	-0.59225	-0.00029452	497.28894413434523	86.069	1.3377	83.422	83.091	84.429	-2.6463					61	26	3	0	0	0	0.027455	1	7274	7274		51.335	10.557	1	395340	+		43535	25432	35996	36019	46968	46968					0.06890046822900331
PPNPSALLALL	11	Unmodified	_PPNPSALLALL_					0	0	0		nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3;ENSG00000076826|ENST00000160298|CAMSAP3	nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3	nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3	MULTI-MSMS	OvCa9_classI_Rep3	3	553.33203125	2	553.334424	1104.6543	-5.4992	-0.0030429	1.7092	0.00094578	-3.7899	-0.0020971	553.3351787520976	152.55	1.4112	151.58	151.19	152.61	-0.97301					72	28	4	0	0	0	0.72479	1	13029	13029		18.262	1.7889	1	153020			43536	14893	35997	36020	46969	46969					0.10615462062560255
PPNPVVKGRR	10	Unmodified	_PPNPVVKGRR_					0	0	0		ENSG00000108946|ENST00000589228|PRKAR1A;nc|ENSG00000108946|P10644-2|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	ENSG00000108946|ENST00000589228|PRKAR1A	MULTI-MSMS	OvCa9_classI_Rep2	2	560.34033203125	2	560.340907	1118.66726	-4.5115	-0.002528	3.6455	0.0020427	-0.86609	-0.0004853	560.3427660344651	160.69	1.3876	160.47	160.23	161.62	-0.22697					59	27	4	0	0	0	0.73378	1	16366	16366		26.693	1.2427	1	170910			43537	2687	35998	36021	46970	46970					0.11267337965318802
PPNQVIIGLSL	11	Unmodified	_PPNQVIIGLSL_					0	0	0		tr|A0A553SP08|A0A553SP08_NIACIFlagellarbiosyntheticproteinFliPOS=NialliacirculansOX=1397GN=fliPPE=3SV=1	tr|A0A553SP08|A0A553SP08_NIACIFlagellarbiosyntheticproteinFliPOS=NialliacirculansOX=1397GN=fliPPE=3SV=1	tr|A0A553SP08|A0A553SP08_NIACIFlagellarbiosyntheticproteinFliPOS=NialliacirculansOX=1397GN=fliPPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.84228515625	2	575.845156	1149.67576	-2.1491	-0.0012375	-1.4619	-0.00084184	-3.611	-0.0020794	575.8441928035448	141.47	4.0925	141.24	139.21	143.3	-0.22696					166	82	3	0	0	0	0.72064	1	14232	14232		22.58	5.8623	1	100260			43538	33991	35999	36022	46971	46971					0.10690847091291289
PPNQVIIGLSL	11	Unmodified	_PPNQVIIGLSL_					0	0	0		tr|A0A553SP08|A0A553SP08_NIACIFlagellarbiosyntheticproteinFliPOS=NialliacirculansOX=1397GN=fliPPE=3SV=1	tr|A0A553SP08|A0A553SP08_NIACIFlagellarbiosyntheticproteinFliPOS=NialliacirculansOX=1397GN=fliPPE=3SV=1	tr|A0A553SP08|A0A553SP08_NIACIFlagellarbiosyntheticproteinFliPOS=NialliacirculansOX=1397GN=fliPPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8418579101562	2	575.845156	1149.67576	-2.8608	-0.0016474	-0.58729	-0.00033819	-3.4481	-0.0019856	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.67529	1	14528	14528		37.812	3.639	1	356230			43539	33991	35999	36022	46972	46972					0.10690847091291289
PPNRRERDQ	9	Unmodified	_PPNRRERDQ_					0	0	0			REV__L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|143|3|sense	REV__L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|143|3|sense	MSMS	OvCa9_classI_Rep3	3	584.3038330078125	2	584.30251	1166.59047	NaN	NaN	NaN	NaN	NaN	NaN	NaN	55.58	1	52.409	51.909	52.909	-3.1715								0	0	0	0.28349	1	1517	1517		11.511	0.64546	1		+		43540	28597	36000	36023	46973	46973					0.013834946781798863
PPNSSAPAAKL	11	Unmodified	_PPNSSAPAAKL_					0	0	0			REV__ENSG00000118454|ENST00000370944|ANKRD13C	REV__ENSG00000118454|ENST00000370944|ANKRD13C	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.758056640625	2	526.790381	1051.56621	-0.43989	-0.00023173	-1.7267	-0.00090959	-2.1666	-0.0011413	526.7890270919095	68.46	0.79171	68.46	68.315	69.106	0					47	18	3	0	0	0	0.025528	1	6482	6482		42.864	5.7052	1	986890	+		43541	18397	36001	36024	46974	46974					0.04248841471940068
PPPAGSHH	8	Unmodified	_PPPAGSHH_					0	0	0			REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	REV__nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	MULTI-MSMS	OvCa99_classI_Rep5	1	400.19921875	2	400.195919	798.377286	1.1852	0.00047431	3.3542	0.0013423	4.5394	0.0018166	400.1972113470581	56.114	1.4118	56.114	55.682	57.093	0					74	33	3	0	0	0	0.72134	3	4620	4620;4648;4679		39.021	15.985	1	12597000	+		43542	17875	36002	36025	46975;46976;46977	46975					-0.029967663108777742
PPPAPPPPPL	10	Unmodified	_PPPAPPPPPL_					0	0	0		ENSG00000271601|ENST00000604000|LIX1L	ENSG00000271601|ENST00000604000|LIX1L;REV__ENSG00000272333|ENST00000420124|KMT2B;REV__ENST00000493275.5_1_6:26383438-26385267:+|nuORF	REV__ENSG00000272333|ENST00000420124|KMT2B	MULTI-SECPEP	OvCa9_classI_Rep2	2	490.29931640625	2	490.284203	978.553853	-0.77403	-0.00037949	-0.22917	-0.00011236	-1.0032	-0.00049185	490.28409300115413	33.854	0.5911	31.144	30.922	31.513	-2.7097					16	11	2	0	0	0	0.026672	1	1278	1278		54.765	17.736	1	24287			43543	23613;9548;24768	36003	36026	46978	46978					0.06371849799552365
PPPAPTAPQPP	11	Unmodified	_PPPAPTAPQPP_					0	0	0		nc|ENSG00000146112|Q6NYC8-3|PPP1R18;ENSG00000146112|ENST00000274853|PPP1R18	nc|ENSG00000146112|Q6NYC8-3|PPP1R18	nc|ENSG00000146112|Q6NYC8-3|PPP1R18	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.31884765625	2	535.287474	1068.5604	-2.0194	-0.001081	-2.1426	-0.0011469	-4.1621	-0.0022279	535.2863837396718	53.74	0.99461	50.926	50.578	51.573	-2.8139					41	19	3	0	0	0	0.025638	1	3723	3723		45.972	5.1941	1	86523			43544	5267	36004	36027	46979	46979					0.02885742960256721
PPPDTVVIQAK	11	Unmodified	_PPPDTVVIQAK_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-MSMS	OvCa9_classI_Rep2	2	582.8345947265625	2	582.834788	1163.65502	2.9414	0.0017143	-2.0377	-0.0011876	0.90375	0.00052673	582.8333769182515	26.182	0.49043	23.472	23.311	23.802	-2.7097					15	10	2	0	0	0	0.72521	1	345	345		12.812	0.60486	1	12953	+		43545	28919	36005	36028	46980	46980					0.07974256711622729
PPPDTVVIQAK	11	Unmodified	_PPPDTVVIQAK_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	582.834788	1163.65502	2.9414	0.0017143	-2.0377	-0.0011876	0.90375	0.00052673	582.8333769182515	26.182	0.49043	23.472	23.311	23.802	-2.7097	0	0	NaN	12.812	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12953	+		43546	28919	36005	36028							0.07974256711622729
PPPETEVVLIK	11	Unmodified	_PPPETEVVLIK_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-2|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	OvCa9_classI_Rep2	2	611.3548583984375	2	611.358096	1220.70164	-3.7398	-0.0022864	0.47754	0.00029195	-3.2623	-0.0019944	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.70142	1	15190	15190		29.17	0.91578	1	331570			43547	1151	36006	36029	46981	46981					0.10011696542892423
PPPGGARR	8	Unmodified	_PPPGGARR_					0	0	0		ENST00000497920.1_1_2:97215573-97218047:+|nuORF	ENST00000497920.1_1_2:97215573-97218047:+|nuORF	ENST00000497920.1_1_2:97215573-97218047:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	404.2328186035156	2	404.232836	806.45112	1.4985	0.00060574	-1.2529	-0.00050645	0.24562	9.9287E-05	404.2322157005619	134.25	0.93222	134.02	133.46	134.39	-0.22697					47	18	3	0	0	0	0.75915	1	13289	13289		20.482	0	1	139150			43548	12818	36007	36030	46982	46982					0.04015201851461825
PPPGGARR	8	Unmodified	_PPPGGARR_					0	0	0		ENST00000497920.1_1_2:97215573-97218047:+|nuORF	ENST00000497920.1_1_2:97215573-97218047:+|nuORF	ENST00000497920.1_1_2:97215573-97218047:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	404.2325439453125	2	404.232836	806.45112	0.13742	5.5549E-05	-0.55221	-0.00022322	-0.41479	-0.00016767	404.2323701373438	135.34	2.116	134.24	133.77	135.88	-1.1076					82	42	4	0	0	0	0.75915	1	10935	10935		20.482	0	1	396570			43549	12818	36007	36030	46983	46983					0.04015201851461825
PPPGGGAG	8	Unmodified	_PPPGGGAG_					0	0	0			REV__KHSRP|p.E367Afs*119|1|0.05|ENSG00000088247|chr19:6417069-6417070|-/G|frameshift_variant	REV__KHSRP|p.E367Afs*119|1|0.05|ENSG00000088247|chr19:6417069-6417070|-/G|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	608.3383178710938	1	609.299101	608.291825	0.69412	0.00042293	-0.38782	-0.0002363	0.3063	0.00018663	609.2986778796345	45.703	0.43839	45.703	45.54	45.979	0					22	9	3	0	0	0	0.028476	1	3206	3206		10.185	0	1	559470	+		43550	17174	36008	36031	46984	46984					-0.027989314965225276
PPPGVHLQ	8	Unmodified	_PPPGVHLQ_					0	0	0		ENST00000510506.5_1_4:3948559-3952929:-|nuORF;ENST00000506770.5_1_4:3949467-3952929:-|nuORF	ENST00000510506.5_1_4:3948559-3952929:-|nuORF	ENST00000510506.5_1_4:3948559-3952929:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	422.24359130859375	2	422.73742	843.460287	0.31501	0.00013317	-3.2162	-0.0013596	-2.9012	-0.0012264	422.73599651064285	31.228	0.48037	31.228	30.979	31.46	0					16	9	2	0	0	0	0.028476	1	1265	1265		23.037	5.6717	1	30176			43551	12973	36009	36032	46985	46985					0.03229550417131577
PPPHKLELQT	10	Unmodified	_PPPHKLELQT_					0	0	0		nc|ENSG00000176909|Q6ZN01-3|MAMSTR;nc|ENSG00000176909|Q6ZN01-2|MAMSTR;ENSG00000176909|ENST00000318083|MAMSTR	nc|ENSG00000176909|Q6ZN01-3|MAMSTR	nc|ENSG00000176909|Q6ZN01-3|MAMSTR	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.7982788085938	2	580.327131	1158.63971	1.6869	0.00097895	-0.22723	-0.00013187	1.4597	0.00084708	580.3264747599919	95.631	0.41752	95.631	95.451	95.869	0					20	9	3	0	0	0	0.027088	1	10474	10474		14.137	0	1	377130			43552	7637	36010	36033	46986	46986					0.0667338991440829
PPPLPSSR	8	Unmodified	_PPPLPSSR_					0	0	0		nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	MULTI-SECPEP	OvCa9_classI_Rep2	2	424.9098205566406	2	425.742702	849.470852	1.1259	0.00047934	-0.36579	-0.00015573	0.76011	0.00032361	425.74212395301674	65.734	0.64868	63.038	62.67	63.319	-2.6958					22	12	2	0	0	0	0.028476	1	5039	5039		33.516	1.5607	1	16077			43553	3876	36011	36034	46987	46987					0.040095330715644195
PPPLPSSR	8	Unmodified	_PPPLPSSR_					0	0	0		nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2;ENSG00000128298|ENST00000381669|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	nc|ENSG00000128298|Q6UXY1-2|BAIAP2L2	MULTI-MATCH	OvCa99_classI_Rep5	1		2	425.742702	849.470852	0.42849	0.00018243	0.31428	0.0001338	0.74277	0.00031623	425.74250216291813	62.983	0.36329	62.983	62.777	63.14	0	-0.0042757	1.2376E-05	NaN	33.516	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155480			43554	3876	36011	36034							0.040095330715644195
PPPNRTLNRL	10	Unmodified	_PPPNRTLNRL_					0	0	0		ADRB2|p.N352Mfs*91|1|0.42|ENSG00000169252|chr5:148827882-148827882|G/-|frameshift_variant	ADRB2|p.N352Mfs*91|1|0.42|ENSG00000169252|chr5:148827882-148827882|G/-|frameshift_variant	ADRB2|p.N352Mfs*91|1|0.42|ENSG00000169252|chr5:148827882-148827882|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3422241210938	2	589.343646	1176.67274	-4.3129	-0.0025418	3.0093	0.0017735	-1.3036	-0.00076827	589.3453728975387	144.79	3.9151	143.81	141.71	145.63	-0.97299					242	78	5	0	0	0	0.73378	1	12075	12075		26.693	1.1189	1	192050			43555	43	36012	36035	46988	46988					0.09147016757151505
PPPPLLLQ	8	Unmodified	_PPPPLLLQ_					0	0	0			REV__ENSG00000176165|ENST00000313071|FOXG1	REV__ENSG00000176165|ENST00000313071|FOXG1	MULTI-SECPEP	OvCa99_classI_Rep5	1	438.5435791015625	2	437.773471	873.53239	2.9321	0.0012836	-0.28732	-0.00012578	2.6448	0.0011578	437.773217219539	92.743	1.0051	92.743	92.216	93.221	0					43	23	3	0	0	0	0.028476	1	10094	10094		54.765	5.5539	1	626240	+		43556	21935	36013	36036	46989	46989					0.09056464770844741
PPPPPPEF	8	Unmodified	_PPPPPPEF_					0	0	0		UBR1|p.F1551Gfs*31|1|0.15|ENSG00000159459|chr15:42963962-42963984|CAATATTCCTGGAAGAGCAGGAA/-|frameshift_variant;ENSG00000159459|ENST00000290650|UBR1;ENST00000564540.5_1_15:43313466-43317626:-|nuORF;UBR1|p.A932Lfs*6|1|0.45|ENSG00000159459|chr15:43022747-43022747|C/-|frameshift_variant;UBR1|p.D1423Vfs*11|1|0.83|ENSG00000159459|chr15:42976794-42976818|GAACTAACTGAAGAAGGCTGCAGAT/-|frameshift_variant	UBR1|p.F1551Gfs*31|1|0.15|ENSG00000159459|chr15:42963962-42963984|CAATATTCCTGGAAGAGCAGGAA/-|frameshift_variant	UBR1|p.F1551Gfs*31|1|0.15|ENSG00000159459|chr15:42963962-42963984|CAATATTCCTGGAAGAGCAGGAA/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	439.22808837890625	2	439.226354	876.438155	0.25875	0.00011365	-0.076718	-3.3697E-05	0.18203	7.9954E-05	439.2261359232598	50.009	1.1823	50.009	49.593	50.775	0					67	26	5	0	0	0	0.67106	1	3788	3788		49.211	2.4444	1	3232400			43557	6014	36014	36037	46990	46990					-0.005006740512953911
PPPPPPSH	8	Unmodified	_PPPPPPSH_					0	0	0		nc|ENSG00000245848|P49715-3|CEBPA;nc|ENSG00000245848|P49715-2|CEBPA;ENSG00000245848|ENST00000498907|CEBPA;nc|ENSG00000245848|P49715-4|CEBPA	nc|ENSG00000245848|P49715-3|CEBPA;REV__ENSG00000100485|ENST00000216373|SOS2	REV__ENSG00000100485|ENST00000216373|SOS2	MULTI-SECPEP	OvCa9_classI_Rep2	2	413.2399597167969	2	413.216321	824.418088	0.64977	0.00026849	0.90231	0.00037285	1.5521	0.00064134	413.21468877183	64.489	0.47775	61.764	61.545	62.023	-2.7245					12	8	2	0	0	0	0.028476	1	4903	4903		29.842	0	1	9345.1			43558	17422;9404	36015	36038	46991	46991					-0.0011442499124996175
PPPPRFQAP	9	Unmodified	_PPPPRFQAP_					0	0	0		ENST00000440884.7_1_14:103851910-103852066:+|nuORF	ENST00000440884.7_1_14:103851910-103852066:+|nuORF	ENST00000440884.7_1_14:103851910-103852066:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.7783508300781	2	503.777077	1005.5396	0.4913	0.0002475	2.6317	0.0013258	3.1229	0.0015733	503.77822195567444	37.131	2.2949	34.239	32.696	34.991	-2.8925					103	45	3	0	0	0	0.6653	1	1313	1313		24.203	0	1	100360			43559	11923	36016	36039	46992	46992					0.03705197371277791
PPPPTGSF	8	Unmodified	_PPPPTGSF_					0	0	0			REV__nc|ENSG00000130475|O14526-3|FCHO1	REV__nc|ENSG00000130475|O14526-3|FCHO1	MULTI-MSMS	OvCa99_classI_Rep5	1	400.2042541503906	2	400.202879	798.391205	4.568	0.0018281	-1.7106	-0.00068458	2.8575	0.0011436	400.2020751067512	87.992	0.67152	87.992	87.712	88.384	0					34	15	3	0	0	0	0.59103	1	9353	9353		65.897	0	1	1103000	+		43560	15970	36017	36040	46993	46993					-0.016055336024351163
PPPQAKLLTL	10	Unmodified	_PPPQAKLLTL_					0	0	0			REV__nc|ENSG00000138119|Q9NZM1-4|MYOF	REV__nc|ENSG00000138119|Q9NZM1-4|MYOF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.2982788085938	2	539.336967	1076.65938	-0.6813	-0.00036745	-1.7997	-0.00097063	-2.481	-0.0013381	539.3358580352677	39.025	0.24852	36.098	35.997	36.246	-2.9264					7	4	2	0	0	0	0.026994	1	1575	1575		13.454	0	1	4826.9	+		43561	28882	36018	36041	46994	46994					0.12411765925162399
PPPRARGG	8	Unmodified	_PPPRARGG_					0	0	0			REV__ENST00000497866.5_1_1:44444922-44446927:+|nuORF	REV__ENST00000497866.5_1_1:44444922-44446927:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	404.2327575683594	2	404.232836	806.45112	1.4985	0.00060574	-1.2529	-0.00050645	0.24562	9.9287E-05	404.2322157005619	134.25	0.93222	134.02	133.46	134.39	-0.22697					47	18	3	0	0	0	0.74679	1	13283	13283		28.254	2.8041	1	139150	+		43562	26786	36019	36042	46995	46995					0.040152018514731935
PPPRARGGRV	10	Unmodified	_PPPRARGGRV_					0	0	0			REV__ENST00000497866.5_1_1:44444922-44446927:+|nuORF	REV__ENST00000497866.5_1_1:44444922-44446927:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	531.816162109375	2	531.817599	1061.62064	-1.6193	-0.00086116	0.29076	0.00015463	-1.3285	-0.00070653	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.71192	1	11352	11352		29.15	2.3535	1	178650	+		43563	26786	36020	36043	46996	46996					0.09229898134049108
PPPRCPPA	8	Unmodified	_PPPRCPPA_					0	0	0			REV__BIN2|p.S415C|1|0.23|ENSG00000110934|chr12:51291863-51291863|T/A|missense_variant	REV__BIN2|p.S415C|1|0.23|ENSG00000110934|chr12:51291863-51291863|T/A|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	417.7174987792969	2	417.718173	833.421793	2.6452	0.001105	-4.026	-0.0016817	-1.3807	-0.00057675	417.71632504075836	120.31	2.3096	120.31	120.05	122.36	0					128	52	3	0	0	0	0.67106	1	13905	13905		49.211	10.189	1	6297000	+		43564	15702	36021	36044	46997	46997					-0.0015807848903932609
PPPRGDPEAV	10	Unmodified	_PPPRGDPEAV_					0	0	0		ENSG00000284188|ENST00000640271|unknown	ENSG00000284188|ENST00000640271|unknown	ENSG00000284188|ENST00000640271|unknown	MULTI-MSMS	OvCa99_classI_Rep5	1	517.7702026367188	2	517.766906	1033.51926	-0.51765	-0.00026802	3.2287	0.0016717	2.711	0.0014037	517.7686041700894	60.401	0.97684	60.401	59.839	60.816	0					48	23	4	0	0	0	0.66721	1	5280	5280		34.173	0	1	1398600			43565	9620	36022	36045	46998	46998					0.0038398192079966975
PPPRGDPEAV	10	Unmodified	_PPPRGDPEAV_					0	0	0		ENSG00000284188|ENST00000640271|unknown	ENSG00000284188|ENST00000640271|unknown	ENSG00000284188|ENST00000640271|unknown	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	517.766906	1033.51926	-0.43028	-0.00022279	1.1726	0.00060715	0.74235	0.00038436	517.7676316388547	63.812	0.67455	60.337	60.109	60.784	-3.475	-0.032249	-0.0017774	NaN	34.173	21	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58152			43566	9620	36022	36045							0.0038398192079966975
PPPRSHHPPH	10	Unmodified	_PPPRSHHPPH_					0	0	0		ENST00000447750.6_1_X:153671019-153671121:+|nuORF	ENST00000447750.6_1_X:153671019-153671121:+|nuORF	ENST00000447750.6_1_X:153671019-153671121:+|nuORF	MSMS	OvCa99_classI_Rep5	1	579.799072265625	2	579.799406	1157.58426	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.13	1	138.13	137.63	138.63	0								0	0	0	0.14009	1	16117	16117		32.812	3.6629	1				43567	12010	36023	36046	46999	46999					0.011770212373221511
PPPSAVGFA	9	Unmodified	_PPPSAVGFA_					0	0	0			REV__ENSG00000135829|ENST00000367549|DHX9	REV__ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	OvCa99_classI_Rep5	1	422.24359130859375	2	421.723978	841.433404	0.31361	0.00013226	-0.053137	-2.2409E-05	0.26047	0.00010985	421.72342320866414	31.1	0.23895	31.1	30.979	31.218	0					7	4	2	0	0	0	0.027462	1	1265	1265		19.36	0	1	13801	+		43568	19325	36024	36047	47000	47000					0.006344418059484269
PPPTIKNF	8	Unmodified	_PPPTIKNF_					0	0	0			REV__ENST00000562994.5_2_16:86580251-86585743:-|nuORF	REV__ENST00000562994.5_2_16:86580251-86585743:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	457.26123046875	2	457.260728	912.506903	-0.073153	-3.345E-05	-0.39582	-0.00018099	-0.46897	-0.00021444	457.26059831172034	47.315	0.9102	47.315	47.03	47.941	0					37	20	2	0	0	0	0.62934	1	3386	3386		57.811	7.7867	1	1828200	+		43569	17607	36025	36048	47001	47001					0.04714990248419326
PPPVTGISPS	10	Unmodified	_PPPVTGISPS_					0	0	0			REV__ENST00000452079.5_2_1:3659748-3662767:-|nuORF	REV__ENST00000452079.5_2_1:3659748-3662767:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.3002014160156	2	476.260925	950.507297	0.66264	0.00031559	-0.16148	-7.6907E-05	0.50116	0.00023868	476.2603446378568	65.275	1.1618	62.55	62.128	63.29	-2.7246					44	22	3	0	0	0	0.026665	1	5049	5049		34.173	6.2903	1	79779	+		43570	25566	36026	36049	47002	47002					0.030063651776117695
PPQHAVKLML	10	Unmodified	_PPQHAVKLML_					0	0	0			REV__nc|ENSG00000112851|Q96RT1-6|ERBIN;REV__ENST00000505822.1_1_5:65370974-65372269:+|nuORF	REV__nc|ENSG00000112851|Q96RT1-6|ERBIN	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3294067382812	2	567.328619	1132.64269	-1.6483	-0.00093515	3.589	0.0020361	1.9407	0.001101	567.3305014697371	141.66	3.9446	141.43	139.35	143.3	-0.22697					200	79	3	0	0	0	0.7759	1	14196	14196		21.96	3.6355	1	83872	+		43571	28801;26881	36027	36050	47003	47003					0.08166941767581193
PPQIVIAS	8	Unmodified	_PPQIVIAS_					0	0	0			REV__nc|ENSG00000225830|P0DP91|ERCC6	REV__nc|ENSG00000225830|P0DP91|ERCC6	MULTI-MSMS	OvCa9_classI_Rep2	2	412.7461242675781	2	412.747453	823.480354	0.89602	0.00036983	-3.8761	-0.0015999	-2.9801	-0.00123	412.745727074971	134.3	1.3763	134.07	133.07	134.44	-0.22697					63	27	4	0	0	0	0.74679	1	13270	13270		28.254	2.8041	1	259910	+		43572	29141	36028	36051	47004	47004					0.06155301357080134
PPQNLTVTV	9	Unmodified	_PPQNLTVTV_					0	0	0		nc|ENSG00000168995|Q9Y286-2|SIGLEC7;ENSG00000168995|ENST00000317643|SIGLEC7	nc|ENSG00000168995|Q9Y286-2|SIGLEC7	nc|ENSG00000168995|Q9Y286-2|SIGLEC7	MULTI-MSMS	OvCa9_classI_Rep3	3	484.7757568359375	2	484.7742	967.533846	-1.5084	-0.00073122	-0.15829	-7.6735E-05	-1.6667	-0.00080796	484.77403906510136	92.046	3.4526	90.022	89.433	92.885	-2.0241					159	69	4	0	0	0	0.12365	2	5791	5791;5795		90.777	2.1338	1	6192900			43573	6964	36029	36052	47005;47006	47005					0.04878054068956317
PPRAGPRSIR	10	Unmodified	_PPRAGPRSIR_					0	0	0			REV__ENST00000252674.8_2_19:6211645-6212743:-|nuORF	REV__ENST00000252674.8_2_19:6211645-6212743:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8301391601562	2	553.830706	1105.64686	-0.12008	-6.6502E-05	-1.1717	-0.00064892	-1.2918	-0.00071543	553.8299276335473	138.55	4.0786	138.32	136.16	140.24	-0.22696					182	83	3	0	0	0	0.83261	1	13895	13895		14.865	0	1	64451	+		43574	23868	36030	36053	47007	47007					0.09826167305504896
PPRHLTVAE	9	Unmodified	_PPRHLTVAE_					0	0	0		ENST00000259512.8_1_8:124054423-124054528:-|nuORF	ENST00000259512.8_1_8:124054423-124054528:-|nuORF	ENST00000259512.8_1_8:124054423-124054528:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	510.8373718261719	2	510.285266	1018.55598	-0.86539	-0.0004416	1.4606	0.00074532	0.59521	0.00030373	510.2855562386225	76.456	1.3563	74.085	73.62	74.976	-2.3715					57	25	4	0	0	0	0.027462	1	3884	3884		42.396	3.59	1	219070			43575	9844	36031	36054	47008	47008					0.04744278537373248
PPRKKRRKEKR	11	Unmodified	_PPRKKRRKEKR_					0	0	0			REV__ENSG00000188760|ENST00000373883|TMEM198	REV__ENSG00000188760|ENST00000373883|TMEM198	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.3226013183594	3	493.654937	1477.94298	0.4265	0.00021055	1.2998	0.00064163	1.7263	0.00085218	493.98972169713124	78.522	0.2869	76.783	76.664	76.951	-1.7398					6	5	2	0	0	0	0.026364	1	6567	6567		9.2118	7.793	1	6189	+		43576	22734	36032	36055	47009	47009					0.2231278981316791
PPRLGPFPL	9	Unmodified	_PPRLGPFPL_					0	0	0		ENST00000549407.1_1_12:72056896-72056992:-|nuORF	ENST00000549407.1_1_12:72056896-72056992:-|nuORF	ENST00000549407.1_1_12:72056896-72056992:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.76922607421875	2	497.297645	992.580737	-1.2756	-0.00063438	3.0962	0.0015397	1.8206	0.00090536	497.2996322691896	34.655	0.28091	34.655	34.398	34.679	0					8	5	2	0	0	0	0.027462	1	1658	1658		25.45	4.5032	1	19823			43577	13571	36033	36056	47010	47010					0.08414958410742202
PPRLPRPSV	9	Unmodified	_PPRLPRPSV_					0	0	0			REV__ENST00000458670.1_1_20:1755302-1759483:-|nuORF	REV__ENST00000458670.1_1_20:1755302-1759483:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.8175048828125	2	509.811451	1017.60835	0.11433	5.8285E-05	2.1854	0.0011141	2.2997	0.0011724	509.8117275434798	32.157	0.4475	32.157	32.006	32.453	0					10	8	2	0	0	0	0.027462	1	1375	1375		23.042	6.5693	1	13353	+		43578	25578	36034	36057	47011	47011					0.10024861670990504
PPRNSVAI	8	Unmodified	_PPRNSVAI_					0	0	0			REV__tr|A0A553SP28|A0A553SP28_NIACISignalrecognitionparticleproteinOS=NialliacirculansOX=1397GN=ffhPE=3SV=1	REV__tr|A0A553SP28|A0A553SP28_NIACISignalrecognitionparticleproteinOS=NialliacirculansOX=1397GN=ffhPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	427.2497253417969	2	427.248152	852.481751	1.5566	0.00066506	3.5202	0.001504	5.0768	0.002169	427.2495609985841	89.973	1.9784	88.671	88.334	90.312	-1.302					100	38	4	0	0	0	0.64026	1	7926	7926		55.504	2.1528	1	774900	+		43579	30481	36035	36058	47012	47012					0.049609354458425514
PPRPLVHPL	9	Unmodified	_PPRPLVHPL_					0	0	0		nc|ENSG00000161681|Q9Y566-3|SHANK1;ENSG00000161681|ENST00000293441|SHANK1;nc|ENSG00000161681|Q9Y566-2|SHANK1	nc|ENSG00000161681|Q9Y566-3|SHANK1	nc|ENSG00000161681|Q9Y566-3|SHANK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.3125	2	513.316369	1024.61818	-0.60088	-0.00030844	-3.6374	-0.0018671	-4.2383	-0.0021756	513.3145400842664	52.465	1.5618	49.257	48.792	50.354	-3.208					48	30	4	0	0	0	0.027462	1	3213	3213		25.45	0	1	93997			43580	6136	36036	36059	47013	47013					0.10686049676360199
PPRPPPALSL	10	Unmodified	_PPRPPPALSL_					0	0	0		nc|ENSG00000148384|Q9NRR6-2|INPP5E;ENSG00000148384|ENST00000371712|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	MULTI-MSMS	OvCa9_classI_Rep3	3	522.8109741210938	2	522.813659	1043.61277	-5.1563	-0.0026958	0.99532	0.00052037	-4.161	-0.0021754	522.8140763744603	152.4	1.0707	151.42	151.09	152.16	-0.97299					54	21	4	0	0	0	0.67931	1	12998	12998		32.812	0	1	172960			43581	5407	36037	36060	47014	47014					0.09270326093883341
PPRPQCIVR	9	Unmodified	_PPRPQCIVR_					0	0	0			REV__SVA_C_dup306|chr11:76581923-76583356:-|1.005766169199819|0.0397377111360499|4.66|411.0|20|2|sense	REV__SVA_C_dup306|chr11:76581923-76583356:-|1.005766169199819|0.0397377111360499|4.66|411.0|20|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.2875366210938	2	533.302936	1064.59132	0.93014	0.00049605	-3.0726	-0.0016386	-2.1425	-0.0011426	533.3017889436746	153.49	1.0274	153.49	153.1	154.12	0					24	20	2	0	0	0	0.027462	1	18018	18018		30.504	14.862	1	32178	+		43582	29473	36038	36061	47015	47015					0.06160617793534584
PPRQPVRVPPI	11	Unmodified	_PPRQPVRVPPI_					0	0	0			REV__ENST00000427497.3_1_17:17135133-17140372:-|nuORF	REV__ENST00000427497.3_1_17:17135133-17140372:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	628.3817749023438	2	628.385314	1254.75608	-4.0512	-0.0025457	-0.39444	-0.00024786	-4.4456	-0.0027935	628.3849132400738	150.53	4.7174	149.58	148	152.71	-0.95647					178	94	2	0	0	0	0.70865	1	12781	12781		26.693	3.1702	1	419100	+		43583	25683	36039	36062	47016	47016					0.13888753204969362
PPRQPVRVPPI	11	Unmodified	_PPRQPVRVPPI_					0	0	0			REV__ENST00000427497.3_1_17:17135133-17140372:-|nuORF	REV__ENST00000427497.3_1_17:17135133-17140372:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	628.3825073242188	2	628.385314	1254.75608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	150.7	1	149.26	148.76	149.76	-1.4344								0	0	0	0.19422	1	14891	14891		32.812	10.233	1		+		43584	25683	36039	36062	47017	47017					0.13888753204969362
PPRRAPGG	8	Unmodified	_PPRRAPGG_					0	0	0		ENSG00000253352|ENST00000644773|TUG1	ENSG00000253352|ENST00000644773|TUG1	ENSG00000253352|ENST00000644773|TUG1	MULTI-MSMS	OvCa9_classI_Rep3	3	404.2326965332031	2	404.232836	806.45112	0.13742	5.5549E-05	-0.55221	-0.00022322	-0.41479	-0.00016767	404.2323701373438	135.34	2.116	134.24	133.77	135.88	-1.1076					82	42	4	0	0	0	0.75915	1	10931	10931		20.482	0	1	396570			43585	9430	36040	36063	47018	47018					0.040152018514731935
PPRRCRRRGR	10	Unmodified	_PPRRCRRRGR_					0	0	0		ENST00000573965.1_3_16:2933286-2946490:+|nuORF;ENST00000396958.7_2_16:2933286-2946389:+|nuORF	ENST00000573965.1_3_16:2933286-2946490:+|nuORF	ENST00000573965.1_3_16:2933286-2946490:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	437.2576599121094	3	437.258412	1308.75341	-3.525	-0.0015413	1.1675	0.00051048	-2.3576	-0.0010309	437.25900137272055	155.13	2.0506	154.9	154.06	156.11	-0.22697					105	58	2	0	0	0	0.818	1	15810	15810		16.717	2.6314	1	24211			43586	11331	36041	36064	47019	47019					0.11138019319014347
PPRRESSL	8	Unmodified	_PPRRESSL_					0	0	0		ENSG00000107957|ENST00000369774|SH3PXD2A;nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A;nc|ENSG00000107957|Q5TCZ1-3|SH3PXD2A;SH3PXD2A-RB1|1|fusion	ENSG00000107957|ENST00000369774|SH3PXD2A	ENSG00000107957|ENST00000369774|SH3PXD2A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.7881774902344	2	471.261791	940.509028	-0.093683	-4.4149E-05	3.2338	0.001524	3.1401	0.0014798	471.2636959168532	40.666	0.41718	37.712	37.58	37.997	-2.9541					12	7	3	0	0	0	0.028476	1	1777	1777		40.573	0	1	13926			43587	2631	36042	36065	47020	47020					0.03639418986244891
PPRRPGLRTG	10	Unmodified	_PPRRPGLRTG_					0	0	0		ENST00000584632.5_1_17:37617961-37618159:+|nuORF	ENST00000584632.5_1_17:37617961-37618159:+|nuORF	ENST00000584632.5_1_17:37617961-37618159:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8302001953125	2	553.830706	1105.64686	0.13278	7.3535E-05	-1.033	-0.00057208	-0.90018	-0.00049855	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.72319	1	13907	13907		27.882	3.3631	1	400120			43588	14021	36043	36066	47021	47021					0.09826167305527633
PPRRSVPALFV	11	Unmodified	_PPRRSVPALFV_					0	0	0			REV__ENST00000483578.1_1_16:30759640-30762664:+|nuORF	REV__ENST00000483578.1_1_16:30759640-30762664:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8690795898438	2	619.87204	1237.72953	-3.8587	-0.0023919	-0.31006	-0.00019219	-4.1687	-0.0025841	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.72479	1	15459	15459		18.262	0.89712	1	492670	+		43589	26528	36044	36067	47022	47022					0.12017064313636183
PPRRSVPALFV	11	Unmodified	_PPRRSVPALFV_					0	0	0			REV__ENST00000483578.1_1_16:30759640-30762664:+|nuORF	REV__ENST00000483578.1_1_16:30759640-30762664:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	619.868896484375	2	619.87204	1237.72953	-3.6059	-0.0022352	-0.65337	-0.00040501	-4.2593	-0.0026402	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.70142	1	12887	12887		29.17	5.6474	1	664560	+		43590	26528	36044	36067	47023	47023					0.12017064313636183
PPRTRPRR	8	Unmodified	_PPRTRPRR_					0	0	0		ENST00000553427.5_1_14:92588507-92592514:+|nuORF	ENST00000553427.5_1_14:92588507-92592514:+|nuORF	ENST00000553427.5_1_14:92588507-92592514:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.316650390625	2	518.317766	1034.62098	2.0408	0.0010578	-3.6977	-0.0019166	-1.6569	-0.00085879	518.3157944372941	136.58	3.063	135.03	133.61	136.67	-1.5437					148	63	3	0	0	0	0.74229	1	13270	13270		30.504	3.7075	1	141910			43591	13625	36045	36068	47024	47024					0.10505317853881024
PPSASRRRRR	10	Unmodified	_PPSASRRRRR_					0	0	0			REV__ENSG00000126461|ENST00000360565|SCAF1	REV__ENSG00000126461|ENST00000360565|SCAF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8688354492188	2	619.868686	1237.72282	-3.1194	-0.0019336	4.2095	0.0026093	1.0901	0.00067571	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.66721	2	14998	14751;14998		34.173	10.321	1	806750	+		43592	18783	36046	36069	47025;47026	47026					0.11346564205632603
PPSEAEAETAR	11	Unmodified	_PPSEAEAETAR_					0	0	0		nc|ENSG00000141198|O75674-2|TOM1L1;nc|ENSG00000141198|O75674-3|TOM1L1;ENSG00000141198|ENST00000575882|TOM1L1	nc|ENSG00000141198|O75674-2|TOM1L1	nc|ENSG00000141198|O75674-2|TOM1L1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	578.8453369140625	2	579.275292	1156.53603	-0.98707	-0.00057178	0.76173	0.00044125	-0.22534	-0.00013053	579.2756040012259	62.837	1.0604	59.379	59.16	60.221	-3.4577					40	21	3	0	0	0	0.025265	1	4445	4445		28.081	2.0181	1	225090			43593	4899	36047	36070	47027	47027					-0.035975619839064166
PPSFTKKLTKM	11	Unmodified	_PPSFTKKLTKM_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.P12974Lfs*4|1|0.05|ENSG00000155657|chr2:178631204-178631205|-/GTACA|frameshift_variant;TTN|p.E11597Rfs*5|1|0.5|ENSG00000155657|chr2:178651954-178651954|A/-|frameshift_variant;TTN|p.R11195Efs*5|1|0.15|ENSG00000155657|chr2:178674318-178674318|A/-|frameshift_variant;TTN|p.E9011Nfs*14|1|0.03|ENSG00000155657|chr2:178711255-178711255|T/-|frameshift_variant;TTN|p.G8550Tfs*3|1|0.05|ENSG00000155657|chr2:178714032-178714059|ATTTGTTGTCACTTGTTAGCTCTTTTCC/-|frameshift_variant;TTN|p.S7694Qfs*32|1|0.04|ENSG00000155657|chr2:178719360-178719360|G/-|frameshift_variant;TTN|p.C7689Pfs*18|1|0.03|ENSG00000155657|chr2:178719373-178719374|CA/-|frameshift_variant;TTN|p.L7641Yfs*6|1|0.07|ENSG00000155657|chr2:178719621-178719621|T/-|frameshift_variant;TTN|p.T6904Lfs*6|1|0.08|ENSG00000155657|chr2:178723439-178723439|T/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OvCa9_classI_Rep2	2	639.362548828125	2	639.367941	1276.72133	-4.8017	-0.0030701	-2.7212	-0.0017399	-7.5229	-0.0048099	639.3660260364965	154.07	1.1512	153.84	153.46	154.62	-0.22696					54	23	3	0	0	0	0.72479	1	15703	15703		18.262	2.2553	1	99157			43594	5793;36288	36048	36071	47028	47028					0.0940374928197798
PPSGLAGLL	9	Unmodified	_PPSGLAGLL_					0	0	0		ENSG00000169884|ENST00000301061|WNT10B;nc|ENSG00000169884|O00744-2|WNT10B	ENSG00000169884|ENST00000301061|WNT10B	ENSG00000169884|ENST00000301061|WNT10B	MULTI-MSMS	OvCa9_classI_Rep2	2	412.74615478515625	2	412.747453	823.480354	0.75275	0.0003107	-3.7611	-0.0015524	-3.0083	-0.0012417	412.74581316945023	134.99	1.618	134.76	134.29	135.91	-0.22696					65	32	3	0	0	0	0.58665	1	13390	13390		33.516	1.5607	1	284470			43595	7047	36049	36072	47029	47029					0.06155301357091503
PPSGLRQKLSR	11	Unmodified	_PPSGLRQKLSR_					0	0	0		ENSG00000272031|ENST00000606888|ANKRD34A	ENSG00000272031|ENST00000606888|ANKRD34A	ENSG00000272031|ENST00000606888|ANKRD34A	MULTI-MSMS	OvCa9_classI_Rep2	2	619.869384765625	2	619.870028	1237.7255	-3.8587	-0.0023919	2.9348	0.0018192	-0.92393	-0.00057272	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.71321	1	15351	15351		25.126	4.1791	1	492670			43596	9550	36050	36073	47030	47030					0.11614974819917734
PPSGLRQKLSR	11	Unmodified	_PPSGLRQKLSR_					0	0	0		ENSG00000272031|ENST00000606888|ANKRD34A	ENSG00000272031|ENST00000606888|ANKRD34A	ENSG00000272031|ENST00000606888|ANKRD34A	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8690795898438	2	619.870028	1237.7255	-2.7857	-0.0017268	1.79	0.0011095	-0.99576	-0.00061724	619.8709153162803	147.4	3.9416	146.45	144.36	148.3	-0.9512					241	78	4	0	0	0	0.70761	1	12404	12404		27.047	5.3616	1	225770			43597	9550	36050	36073	47031	47031					0.11614974819917734
PPSGLRQKLSR	11	Unmodified	_PPSGLRQKLSR_					0	0	0		ENSG00000272031|ENST00000606888|ANKRD34A	ENSG00000272031|ENST00000606888|ANKRD34A	ENSG00000272031|ENST00000606888|ANKRD34A	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8692016601562	2	619.870028	1237.7255	-3.6059	-0.0022352	2.5915	0.0016064	-1.0145	-0.00062885	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.70142	2	12702	12702;13005		29.17	2.1227	1	664560			43598	9550	36050	36073	47032;47033	47032					0.11614974819917734
PPSGLRQKLSR	11	Unmodified	_PPSGLRQKLSR_					0	0	0		ENSG00000272031|ENST00000606888|ANKRD34A	ENSG00000272031|ENST00000606888|ANKRD34A	ENSG00000272031|ENST00000606888|ANKRD34A	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8682250976562	2	619.870028	1237.7255	-1.8762	-0.001163	0.9332	0.00057847	-0.94295	-0.00058451	619.8704234308321	147.79	3.8764	146.35	144.25	148.12	-1.4351					189	77	4	0	0	0	0.71321	1	14442	14442		25.126	5.1292	1	269210			43599	9550	36050	36073	47034	47034					0.11614974819917734
PPSKEIPKKTL	11	Unmodified	_PPSKEIPKKTL_					0	0	0		ENST00000409195.5_2_2:168108454-168115870:+|nuORF;nc|ENSG00000163092|A4UGR9-7|XIRP2;nc|ENSG00000163092|A4UGR9-5|XIRP2;nc|ENSG00000163092|A4UGR9-4|XIRP2;nc|ENSG00000163092|A4UGR9-6|XIRP2	ENST00000409195.5_2_2:168108454-168115870:+|nuORF	ENST00000409195.5_2_2:168108454-168115870:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8825073242188	2	619.379363	1236.74417	-6.4826	-0.0040152	2.4796	0.0015358	-4.003	-0.0024793	619.3808669588078	162.75	0.48041	161.12	160.94	161.42	-1.6336					22	12	2	0	0	0	0.72473	1	16088	16088		19.104	1.7386	1	17984			43600	11518	36051	36074	47035	47035					0.1352709167113062
PPSKEIPKKTL	11	Unmodified	_PPSKEIPKKTL_					0	0	0		ENST00000409195.5_2_2:168108454-168115870:+|nuORF;nc|ENSG00000163092|A4UGR9-7|XIRP2;nc|ENSG00000163092|A4UGR9-5|XIRP2;nc|ENSG00000163092|A4UGR9-4|XIRP2;nc|ENSG00000163092|A4UGR9-6|XIRP2	ENST00000409195.5_2_2:168108454-168115870:+|nuORF	ENST00000409195.5_2_2:168108454-168115870:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	619.379363	1236.74417	-5.5629	-0.0034455	1.9464	0.0012056	-3.6165	-0.00224	619.3807056035699	161.45	0.43851	161.22	160.99	161.43	-0.22697	0.049967	-0.00023412	NaN	19.104	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25208			43601	11518	36051	36074							0.1352709167113062
PPSKLRGRRG	10	Unmodified	_PPSKLRGRRG_					0	0	0		NRF1-FAM40B|1|fusion;nc|ENSG00000128578|Q9ULQ0-2|STRIP2;NRF1-FAM40B|2|fusion;ENSG00000128578|ENST00000249344|STRIP2;STRIP2|p.N588Tfs*21|1|0.05|ENSG00000128578|chr7:129464723-129464723|C/-|frameshift_variant	NRF1-FAM40B|1|fusion	NRF1-FAM40B|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3444213867188	2	562.343981	1122.67341	1.2434	0.00069921	-2.2131	-0.0012445	-0.96974	-0.00054533	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.7759	1	14044	14044		21.96	1.013	1	683710			43602	3886	36052	36075	47036	47036					0.11697856196838075
PPSKPVTV	8	Unmodified	_PPSKPVTV_					0	0	0			REV__ENSG00000095370|ENST00000314830|SH2D3C	REV__ENSG00000095370|ENST00000314830|SH2D3C	MULTI-MSMS	OvCa9_classI_Rep3	3	412.7461242675781	2	412.747453	823.480354	-0.0041108	-1.6967E-06	-3.0137	-0.0012439	-3.0178	-0.0012456	412.74611275073886	135.39	1.6252	134.28	133.62	135.24	-1.1076					83	32	4	0	0	0	0.75661	1	10940	10940		19.36	1.0356	1	589310	+		43603	17288	36053	36076	47037	47037					0.061553013571028714
PPSKPWPSLS	10	Unmodified	_PPSKPWPSLS_					0	0	0			REV__ENSG00000179133|ENST00000636213|C10orf67	REV__ENSG00000179133|ENST00000636213|C10orf67	MULTI-MSMS	OvCa9_classI_Rep2	2	548.2954711914062	2	548.295299	1094.57605	-1.4493	-0.00079464	1.5915	0.0008726	0.14219	7.7962E-05	548.2961982412694	34.285	4.3001	31.575	31.119	35.419	-2.7097					197	86	6	0	0	0	0.59703	1	1275	1275		42.396	1.8235	1	2359300	+		43604	22104	36054	36077	47038	47038					0.03254029477329823
PPSKVHLIG	9	Unmodified	_PPSKVHLIG_					0	0	0		ENSG00000187021|ENST00000358834|PNLIPRP1	ENSG00000187021|ENST00000358834|PNLIPRP1	ENSG00000187021|ENST00000358834|PNLIPRP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.288818359375	2	474.287277	946.560001	2.9498	0.001399	4.2892	0.0020343	7.239	0.0034334	474.28922077273074	129.53	5.9099	128.07	125.62	131.53	-1.4565					195	118	2	0	0	0	0.68641	1	12624	12624		21.702	3.3779	1	37993			43605	8383	36055	36078	47039	47039					0.08458368031097052
PPSLGLLQ	8	Unmodified	_PPSLGLLQ_					0	0	0		ENST00000562955.2_2_1:43919018-43919642:+|nuORF	ENST00000562955.2_2_1:43919018-43919642:+|nuORF	ENST00000562955.2_2_1:43919018-43919642:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	412.7460632324219	2	412.747453	823.480354	0.75275	0.0003107	-3.7611	-0.0015524	-3.0083	-0.0012417	412.74581316945023	134.99	1.618	134.76	134.29	135.91	-0.22696					65	32	3	0	0	0	0.75241	1	13411	13411		25.45	0	1	284470			43606	13780	36056	36079	47040	47040					0.06155301357091503
PPSLPTVVKNV	11	Unmodified	_PPSLPTVVKNV_					0	0	0			REV__ENSG00000115414|ENST00000354785|FN1	REV__ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8432006835938	2	575.845156	1149.67576	-2.8608	-0.0016474	-0.58729	-0.00033819	-3.4481	-0.0019856	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.71789	2	14488	14488;14636		23.523	0.48021	1	356230	+		43607	18242	36057	36080	47041;47042	47041					0.10690847091291289
PPSLPTVVKNV	11	Unmodified	_PPSLPTVVKNV_					0	0	0			REV__ENSG00000115414|ENST00000354785|FN1	REV__ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8431396484375	2	575.845156	1149.67576	-4.018	-0.0023138	0.54994	0.00031668	-3.4681	-0.0019971	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.7046	1	12074	12074		28.081	1.3886	1	445630	+		43608	18242	36057	36080	47043	47043					0.10690847091291289
PPSLPTVVKNV	11	Unmodified	_PPSLPTVVKNV_					0	0	0			REV__ENSG00000115414|ENST00000354785|FN1	REV__ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.84375	2	575.845156	1149.67576	-1.5734	-0.00090602	-1.7064	-0.00098265	-3.2798	-0.0018887	575.8439449675558	145.55	4.7888	144.12	142.78	147.57	-1.4357					360	93	6	0	0	0	0.71498	1	14240	14240		24.519	1.4767	1	565210	+		43609	18242	36057	36080	47044	47044					0.10690847091291289
PPSLQGVRYVD	11	Unmodified	_PPSLQGVRYVD_					0	0	0		ENSG00000177666|ENST00000336615|PNPLA2;ENST00000525250.5_1_11:821680-823850:+|nuORF	ENSG00000177666|ENST00000336615|PNPLA2	ENSG00000177666|ENST00000336615|PNPLA2	MULTI-MSMS	OvCa9_classI_Rep2	2	615.8275146484375	2	615.827495	1229.64044	-0.21741	-0.00013388	-0.36626	-0.00022555	-0.58366	-0.00035943	615.827156884002	80.491	2.1586	78.796	78.025	80.184	-1.6951					139	42	5	0	0	0	0.23673	1	6793	6793		75.043	5.4157	1	852640			43610	7703	36058	36081	47045	47045					0.034801845634547135
PPSLQGVRYVD	11	Unmodified	_PPSLQGVRYVD_					0	0	0		ENSG00000177666|ENST00000336615|PNPLA2;ENST00000525250.5_1_11:821680-823850:+|nuORF	ENSG00000177666|ENST00000336615|PNPLA2	ENSG00000177666|ENST00000336615|PNPLA2	MULTI-MSMS	OvCa9_classI_Rep4_	4	615.8286743164062	2	615.827495	1229.64044	-0.63901	-0.00039352	0.14286	8.7977E-05	-0.49615	-0.00030554	615.8275027674458	81.228	2.188	78.517	77.714	79.902	-2.7106					119	44	5	0	0	0	0.34051	1	6713	6713		65.465	7.2355	1	2431800			43611	7703	36058	36081	47046	47046					0.034801845634547135
PPSLRRYRLTR	11	Unmodified	_PPSLRRYRLTR_					0	0	0		ENST00000282516.12_2_5:36876878-36877172:+|nuORF	ENST00000282516.12_2_5:36876878-36877172:+|nuORF	ENST00000282516.12_2_5:36876878-36877172:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	472.616943359375	3	472.28451	1413.8317	-4.9212	-0.0023242	2.9946	0.0014143	-1.9266	-0.0009099	472.28593650401154	158.64	2.575	158.42	157.5	160.08	-0.22696					106	62	3	0	0	0	0.72493	1	16122	16122		16.53	1.8362	1	56212			43612	10059	36059	36082	47047	47047					0.14133730385242416
PPSLRRYRLTR	11	Unmodified	_PPSLRRYRLTR_					0	0	0		ENST00000282516.12_2_5:36876878-36877172:+|nuORF	ENST00000282516.12_2_5:36876878-36877172:+|nuORF	ENST00000282516.12_2_5:36876878-36877172:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.2828674316406	3	472.28451	1413.8317	-5.3969	-0.0025489	4.0171	0.0018972	-1.3798	-0.00065166	472.28668669654706	159.46	3.529	157.88	156.69	160.22	-1.5858					186	88	4	0	0	0	0.72488	1	15743	15743		17.167	6.5799	1	120390			43613	10059	36059	36082	47048	47048					0.14133730385242416
PPSPARRRAV	10	Unmodified	_PPSPARRRAV_					0	0	0		nc|ENSG00000103253|Q6PII5-3|HAGHL	nc|ENSG00000103253|Q6PII5-3|HAGHL	nc|ENSG00000103253|Q6PII5-3|HAGHL	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8299560546875	2	553.830706	1105.64686	-3.0789	-0.0017052	1.7991	0.0009964	-1.2798	-0.00070877	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.72319	1	11857	11857		27.882	2.3082	1	308210			43614	14936	36060	36083	47049	47049					0.09826167305504896
PPSPLRVPSI	10	Unmodified	_PPSPLRVPSI_					0	0	0			REV__ENST00000376621.7_1_6:30524128-30524182:-|nuORF	REV__ENST00000376621.7_1_6:30524128-30524182:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8170166015625	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.67931	2	13833	13833;13905		32.812	3.6629	1	166960	+		43615	25103	36061	36084	47050;47051	47050					0.09498308748334239
PPSPLRVPSI	10	Unmodified	_PPSPLRVPSI_					0	0	0			REV__ENST00000376621.7_1_6:30524128-30524182:-|nuORF	REV__ENST00000376621.7_1_6:30524128-30524182:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8164672851562	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.72319	2	11409	11409;11501		27.882	5.9224	1	178650	+		43616	25103	36061	36084	47052;47053	47052					0.09498308748334239
PPSPRLAPLA	10	Unmodified	_PPSPRLAPLA_					0	0	0		ENST00000553189.5_1_12:29689066-29935873:-|nuORF	ENST00000553189.5_1_12:29689066-29935873:-|nuORF	ENST00000553189.5_1_12:29689066-29935873:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8037109375	2	509.805834	1017.59712	-0.41042	-0.00020923	-3.6368	-0.0018541	-4.0473	-0.0020633	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.72319	1	13577	13577		27.882	1.1893	1	150140			43617	13621	36062	36085	47054	47054					0.08902039576832976
PPSRLPAAPL	10	Unmodified	_PPSRLPAAPL_					0	0	0			REV__nc|ENSG00000145014|Q2T9K0-4|TMEM44	REV__nc|ENSG00000145014|Q2T9K0-4|TMEM44	MULTI-MSMS	OvCa9_classI_Rep3	3	509.8026428222656	2	509.805834	1017.59712	-1.3099	-0.00066782	-2.9211	-0.0014892	-4.231	-0.002157	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.6104	2	11055	11055;11073		40.778	6.6056	1	99460	+		43618	28911	36063	36086	47055;47056	47055					0.08902039576844345
PPSRLPLVSP	10	Unmodified	_PPSRLPLVSP_					0	0	0		HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|114|3|sense;HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|36|2|sense	HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|114|3|sense	HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|114|3|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8167724609375	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.70152	1	13892	13892		30.318	8.3578	1	166960			43619	14442	36064	36087	47057	47057					0.09498308748334239
PPSRLPLVSP	10	Unmodified	_PPSRLPLVSP_					0	0	0		HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|114|3|sense;HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|36|2|sense	HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|114|3|sense	HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|114|3|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8164672851562	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.64697	1	11613	11613		36.447	2.2742	1	178650			43620	14442	36064	36087	47058	47058					0.09498308748334239
PPSRLPLVSP	10	Unmodified	_PPSRLPLVSP_					0	0	0		HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|114|3|sense;HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|36|2|sense	HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|114|3|sense	HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|114|3|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.817138671875	2	531.818941	1061.62333	0.089047	4.7357E-05	-3.7428	-0.0019905	-3.6538	-0.0019431	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.55109	1	13740	13740		47.96	12.807	1	263230			43621	14442	36064	36087	47059	47059					0.09498308748334239
PPSRTLPN	8	Unmodified	_PPSRTLPN_					0	0	0			REV__nc|ENSG00000116539|Q9NR48|ASH1L	REV__nc|ENSG00000116539|Q9NR48|ASH1L	MULTI-MSMS	OvCa9_classI_Rep4_	4	441.2459716796875	2	441.245609	880.476666	-3.8908	-0.0017168	1.7147	0.00075659	-2.1761	-0.00096021	441.24608169660854	152.74	1.1671	151.3	150.89	152.06	-1.435					49	26	2	0	0	0	0.7549	1	15133	15133		24.203	2.5004	1	31120	+		43622	18305	36065	36088	47060	47060					0.031646315832290384
PPSSFPRK	8	Unmodified	_PPSSFPRK_					0	0	0		ENST00000607190.1_1_2:20101816-20101957:+|nuORF	ENST00000607190.1_1_2:20101816-20101957:+|nuORF	ENST00000607190.1_1_2:20101816-20101957:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	459.2109069824219	2	458.255977	914.497401	-0.47895	-0.00021948	-2.7014	-0.0012379	-3.1804	-0.0014574	458.2548916000127	49.327	0.30133	49.327	49.206	49.507	0					9	6	2	0	0	0	0.028476	1	3700	3700		17.365	0.89182	1	123220			43623	14283	36066	36089	47061	47061					0.03673221962901607
PPSSLSTKPVY	11	Unmodified	_PPSSLSTKPVY_					0	0	0			REV__ENST00000536637.1_1_11:68665368-68671263:-|nuORF	REV__ENST00000536637.1_1_11:68665368-68671263:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	588.3167114257812	2	588.318971	1174.62339	-0.86515	-0.00050898	-1.9826	-0.0011664	-2.8477	-0.0016754	588.3178156551718	47.322	1.787	44.612	44.142	45.929	-2.7097					114	35	4	0	0	0	0.31264	2	2871	2866;2871		67.494	12.717	1	1251100	+		43624	22913	36067	36090	47062;47063	47063					0.04306263957664669
PPSSLSTKPVY	11	Unmodified	_PPSSLSTKPVY_					0	0	0			REV__ENST00000536637.1_1_11:68665368-68671263:-|nuORF	REV__ENST00000536637.1_1_11:68665368-68671263:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	588.3187866210938	2	588.318971	1174.62339	-0.14986	-8.8168E-05	-3.2056	-0.0018859	-3.3555	-0.0019741	588.3171667010001	47.453	2.2552	44.346	43.978	46.233	-3.1077					150	43	5	0	0	0	0.52842	1	2576	2576		51.193	11.94	1	4526700	+		43625	22913	36067	36090	47064	47064					0.04306263957664669
PPSSPLLARL	10	Unmodified	_PPSSPLLARL_					0	0	0			REV__nc|ENSG00000176225|Q86VV8-3|RTTN	REV__nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-MSMS	OvCa9_classI_Rep2	2	525.8173217773438	2	525.818941	1049.62333	-0.034605	-1.8196E-05	-0.18638	-9.8E-05	-0.22098	-0.0001162	525.8186752814286	93.147	1.4956	91.979	91.55	93.046	-1.168					63	28	4	0	0	0	0.3094	2	8304	8304;8308		79.713	10.915	1	591320	+		43626	21942	36068	36091	47065;47066	47065					0.10050308748327552
PPSSPLLARL	10	Unmodified	_PPSSPLLARL_					0	0	0			REV__nc|ENSG00000176225|Q86VV8-3|RTTN	REV__nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.8191528320312	2	525.818941	1049.62333	-0.89486	-0.00047053	0.16362	8.6035E-05	-0.73124	-0.0003845	525.8188740030467	94.503	1.5479	92.035	91.714	93.262	-2.4685					63	30	4	0	0	0	0.44431	1	8273	8273		62.107	7.3311	1	733180	+		43627	21942	36068	36091	47067	47067					0.10050308748327552
PPSSQPTTLI	10	Unmodified	_PPSSQPTTLI_					0	0	0			REV__ENST00000543072.1_1_12:123849536-123850236:+|nuORF	REV__ENST00000543072.1_1_12:123849536-123850236:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	520.7843017578125	2	520.784764	1039.55498	-1.9205	-0.0010002	0.56253	0.00029296	-1.358	-0.00070721	520.7849648493748	140.2	1.1316	139.16	138.79	139.92	-1.0339					49	22	3	0	0	0	0.66944	1	11529	11529		33.922	1.1092	1	84780	+		43628	27387	36069	36092	47068	47068					0.03678019377821329
PPSSSRDPPF	10	Unmodified	_PPSSSRDPPF_					0	0	0		ENST00000405837.5_1_11:62474765-62476674:-|nuORF	ENST00000405837.5_1_11:62474765-62476674:-|nuORF	ENST00000405837.5_1_11:62474765-62476674:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.8281860351562	2	543.764363	1085.51417	-0.39024	-0.0002122	3.7246	0.0020253	3.3343	0.0018131	543.7660904885636	66.898	1.1362	63.408	63	64.136	-3.4902					49	22	3	0	0	0	0.026956	1	4969	4969		34.173	1.3601	1	189370			43629	11474	36070	36093	47069	47069					-0.025163219418118388
PPTAPSRSVQ	10	Unmodified	_PPTAPSRSVQ_					0	0	0			REV__ENST00000471119.5_1_1:33546965-33585780:+|nuORF	REV__ENST00000471119.5_1_1:33546965-33585780:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.322265625	2	520.28018	1038.54581	-0.10966	-5.7056E-05	2.4683	0.0012842	2.3586	0.0012271	520.2820413036857	58.796	1.1251	56.016	55.537	56.662	-2.7801					40	21	3	0	0	0	0.027117	1	4332	4332		28.081	13.217	1	139900	+		43630	26271	36071	36094	47070	47070					0.028076708121261618
PPTDSTLLAEL	11	Unmodified	_PPTDSTLLAEL_					0	0	0			REV__nc|ENSG00000184481|P98177-2|FOXO4	REV__nc|ENSG00000184481|P98177-2|FOXO4	MULTI-MSMS	OvCa99_classI_Rep5	1	578.8125	2	578.808436	1155.60232	1.9759	0.0011437	4.4163	0.0025562	6.3922	0.0036999	578.8109760557832	84.116	2.2372	84.116	83.757	85.994	0					146	53	6	0	0	0	0.50928	1	8869	8869		52.937	0.63753	1	40063000	+		43631	22433	36072	36095	47071	47071					0.030742538581534973
PPTKSLLHPT	10	Unmodified	_PPTKSLLHPT_					0	0	0			REV__ENST00000494101.1_1_16:30680055-30680963:+|nuORF	REV__ENST00000494101.1_1_16:30680055-30680963:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2767333984375	2	545.816399	1089.61824	1.5721	0.00085808	0.50767	0.0002771	2.0798	0.0011352	545.8163183460756	127.62	0.40985	127.62	127.45	127.86	0					14	8	2	0	0	0	0.026606	1	14758	14758		44.377	7.2181	1	155110	+		43632	20498	36073	36096	47072	47072					0.07702004885709357
PPTVSKKA	8	Unmodified	_PPTVSKKA_					0	0	0		ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1;nc|ENSG00000179119|Q68D10-3|SPTY2D1	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	415.2132263183594	2	414.252903	826.491253	-0.79453	-0.00032913	1.423	0.00058948	0.62848	0.00026035	414.25342850576	44.426	1.5681	41.388	40.662	42.23	-3.0385					53	30	3	0	0	0	0.028476	1	2119	2119		25.45	0	1	78831			43633	7804	36074	36097	47073	47073					0.07106703731381003
PPVAWSECEL	10	Unmodified	_PPVAWSECEL_					0	0	0			REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	REV__nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.8848266601562	2	565.762975	1129.5114	1.8333	0.0010372	-2.9811	-0.0016866	-1.1479	-0.00064944	565.7614120812123	122.93	0.32172	122.93	122.77	123.09	0					16	6	3	0	0	0	0.026871	1	14182	14182		29.15	7.4472	1	100610	+		43634	28919	36075	36098	47074	47074					-0.04817913390979811
PPVEKEVQ	8	Unmodified	_PPVEKEVQ_					0	0	0			REV__nc|ENSG00000137337|Q14676-4|MDC1	REV__nc|ENSG00000137337|Q14676-4|MDC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.9375915527344	2	463.2531	924.491647	-1.4827	-0.00068685	0.96152	0.00044543	-0.52115	-0.00024142	463.2529782202488	44.619	0.90941	41.58	40.958	41.867	-3.0385					25	17	2	0	0	0	0.028476	1	2222	2222		47.916	27.434	1	28506	+		43635	19445	36076	36099	47075	47075					0.026380786605727735
PPVFPATQ	8	Unmodified	_PPVFPATQ_					0	0	0		PCDHA7|p.A363Vfs*11|1|0.1|ENSG00000204963|chr5:140835470-140835471|-/T|frameshift_variant;nc|ENSG00000204963|Q9UN72-2|PCDHA7;ENSG00000204963|ENST00000525929|PCDHA7;PCDHA4|p.E422Gfs*17|1|0.51|ENSG00000204967|chr5:140808451-140808452|-/GACCACACTCAATCAATCACTGGTACAATGTGTACCAC|frameshift_variant;nc|ENSG00000204967|Q9UN74-2|PCDHA4;ENSG00000204967|ENST00000530339|PCDHA4	PCDHA7|p.A363Vfs*11|1|0.1|ENSG00000204963|chr5:140835470-140835471|-/T|frameshift_variant	PCDHA7|p.A363Vfs*11|1|0.1|ENSG00000204963|chr5:140835470-140835471|-/T|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	428.715576171875	2	428.731803	855.449054	1.297	0.00055605	0.79451	0.00034063	2.0915	0.00089668	428.7319583189719	124.53	0.27797	124.53	124.37	124.65	0					9	5	2	0	0	0	0.028476	1	14375	14375		33.516	21.309	1	36003			43636	9042	36077	36100	47076	47076					0.01554728322992105
PPVFSKRI	8	Unmodified	_PPVFSKRI_					0	0	0		nc|ENSG00000150275|Q96QU1-4|PCDH15;nc|ENSG00000150275|Q96QU1-6|PCDH15;ENSG00000150275|ENST00000644397|PCDH15;PCDH15|p.R1292Pfs*9|1|0.14|ENSG00000150275|chr10:53840428-53840428|C/-|frameshift_variant;nc|ENSG00000150275|Q96QU1-3|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15	nc|ENSG00000150275|Q96QU1-4|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15	nc|ENSG00000150275|Q96QU1-4|PCDH15	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.28802490234375	2	472.28982	942.565087	-2.429	-0.0011472	-1.7443	-0.00082379	-4.1733	-0.001971	472.2888822731472	151.46	1.6275	150.03	149.41	151.04	-1.4344					87	36	4	0	0	0	0.75723	1	14970	14970		23.042	0	1	477430			43637	15089;15090	36078	36101	47077	47077					0.09150671893701201
PPVGPPRF	8	Unmodified	_PPVGPPRF_					0	0	0		ENST00000375614.6_1_11:111431307-111431388:+|nuORF	ENST00000375614.6_1_11:111431307-111431388:+|nuORF	ENST00000375614.6_1_11:111431307-111431388:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	433.74896240234375	2	433.747788	865.481023	0.64025	0.00027771	-0.038946	-1.6893E-05	0.60131	0.00026081	433.74769550068	73.657	1.4428	73.657	73.074	74.517	0					127	36	5	0	0	0	0.49583	4	7199	7199;7228;7258;7288		77.944	23.423	1	22796000			43638	11059	36079	36102	47078;47079;47080;47081	47078					0.04290140796797459
PPVIGIPKAVL	11	Unmodified	_PPVIGIPKAVL_					0	0	0			REV__tr|A0A553SSG8|A0A553SSG8_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=celBPE=4SV=1	REV__tr|A0A553SSG8|A0A553SSG8_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=celBPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.3245239257812	2	552.362985	1102.71142	-0.62198	-0.00034356	2.0912	0.0011551	1.4692	0.00081153	552.3641356289482	29.161	0.19978	29.161	29.037	29.237	0					6	3	2	0	0	0	0.026149	1	1006	1006		16.473	1.6083	1	18313	+		43639	30837	36080	36103	47082	47082					0.16416929338925002
PPVLAAPLLQ	10	Unmodified	_PPVLAAPLLQ_					0	0	0		nc|ENSG00000183248|Q9H6K5-2|PRR36;ENSG00000183248|ENST00000618550|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	nc|ENSG00000183248|Q9H6K5-2|PRR36	MULTI-SECPEP	OvCa9_classI_Rep3	3	509.7537536621094	2	509.81841	1017.62227	-2.0181	-0.0010289	2.2013	0.0011223	0.18316	9.3381E-05	509.8193428066979	139.59	0.63982	138.53	138.27	138.91	-1.0595					18	12	2	0	0	0	0.027177	1	11487	11487		12.207	5.4713	1	12184			43640	8059	36081	36104	47083	47083					0.11416094379421793
PPVLIVQVQSA	11	Unmodified	_PPVLIVQVQSA_					0	0	0			REV__chr19:50950116-50950767|126|153.25|0.71|7.75|-|0|TE_info:AluSx,AluSx_dup108959,Alu,SINE,donor,+,50950767,50950908|KLK5,None|2	REV__chr19:50950116-50950767|126|153.25|0.71|7.75|-|0|TE_info:AluSx,AluSx_dup108959,Alu,SINE,donor,+,50950767,50950908|KLK5,None|2	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8430786132812	2	575.845156	1149.67576	-2.8608	-0.0016474	-0.58729	-0.00033819	-3.4481	-0.0019856	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.60323	4	14583	14512;14570;14583;14703		44.377	24.38	1	356230	+		43641	15982	36082	36105	47084;47085;47086;47087	47086					0.10690847091291289
PPVLIVQVQSA	11	Unmodified	_PPVLIVQVQSA_					0	0	0			REV__chr19:50950116-50950767|126|153.25|0.71|7.75|-|0|TE_info:AluSx,AluSx_dup108959,Alu,SINE,donor,+,50950767,50950908|KLK5,None|2	REV__chr19:50950116-50950767|126|153.25|0.71|7.75|-|0|TE_info:AluSx,AluSx_dup108959,Alu,SINE,donor,+,50950767,50950908|KLK5,None|2	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8434448242188	2	575.845156	1149.67576	-4.018	-0.0023138	0.54994	0.00031668	-3.4681	-0.0019971	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.68684	5	12050	12050;12063;12085;12138;12144		34.173	6.2903	1	445630	+		43642	15982	36082	36105	47088;47089;47090;47091;47092	47088					0.10690847091291289
PPVLIVQVQSA	11	Unmodified	_PPVLIVQVQSA_					0	0	0			REV__chr19:50950116-50950767|126|153.25|0.71|7.75|-|0|TE_info:AluSx,AluSx_dup108959,Alu,SINE,donor,+,50950767,50950908|KLK5,None|2	REV__chr19:50950116-50950767|126|153.25|0.71|7.75|-|0|TE_info:AluSx,AluSx_dup108959,Alu,SINE,donor,+,50950767,50950908|KLK5,None|2	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8430786132812	2	575.845156	1149.67576	-1.5734	-0.00090602	-1.7064	-0.00098265	-3.2798	-0.0018887	575.8439449675558	145.55	4.7888	144.12	142.78	147.57	-1.4357					360	93	6	0	0	0	0.65947	4	14332	14180;14288;14332;14355		39.253	13.679	1	565210	+		43643	15982	36082	36105	47093;47094;47095;47096	47095					0.10690847091291289
PPVLRLMRSV	10	Unmodified	_PPVLRLMRSV_					0	0	0		ENSG00000125384|ENST00000245457|PTGER2	ENSG00000125384|ENST00000245457|PTGER2	ENSG00000125384|ENST00000245457|PTGER2	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3569946289062	2	584.355168	1166.69578	-2.3121	-0.0013511	4.4342	0.0025912	2.1222	0.0012401	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.74374	1	14676	14676		25.574	9.5673	1	180810			43644	3704	36083	36106	47097	47097					0.1191031955024755
PPVLSLTQ	8	Unmodified	_PPVLSLTQ_					0	0	0		TAF4|p.K971Ffs*103|1|0.04|ENSG00000130699|chr20:61998986-61998987|-/GAGGGTGAAG|frameshift_variant;ENSG00000130699|ENST00000252996|TAF4;ENST00000609041.1_1_20:60581499-60581991:-|nuORF;ENST00000436129.2_1_20:60551226-60583162:-|nuORF	TAF4|p.K971Ffs*103|1|0.04|ENSG00000130699|chr20:61998986-61998987|-/GAGGGTGAAG|frameshift_variant	TAF4|p.K971Ffs*103|1|0.04|ENSG00000130699|chr20:61998986-61998987|-/GAGGGTGAAG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	427.7294616699219	2	427.752736	853.490919	-0.093024	-3.9791E-05	2.112	0.00090343	2.019	0.00086364	427.7533628814763	42.69	1.3275	42.69	42.496	43.823	0					67	30	3	0	0	0	0.028476	1	2891	2891		38.806	18.809	1	538440			43645	32943	36084	36107	47098	47098					0.058312840115036124
PPVMWLLPG	9	Unmodified	_PPVMWLLPG_					0	0	0			REV__ENST00000461757.1_1_2:27423306-27424138:-|nuORF	REV__ENST00000461757.1_1_2:27423306-27424138:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.7723083496094	2	505.280606	1008.54666	-0.12914	-6.5251E-05	-0.29733	-0.00015024	-0.42647	-0.00021549	505.28032556565	33.161	0.3954	33.161	33.039	33.434	0					14	7	3	0	0	0	0.027462	1	1534	1534		39.021	0	1	89225	+		43646	26101	36085	36108	47099	47099					0.04272793927486873
PPVMWLLPG	9	Unmodified	_PPVMWLLPG_					0	0	0			REV__ENST00000461757.1_1_2:27423306-27424138:-|nuORF	REV__ENST00000461757.1_1_2:27423306-27424138:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.7723083496094	2	505.280606	1008.54666	-0.52374	-0.00026463	-0.33207	-0.00016779	-0.85581	-0.00043242	505.2803314002645	33.708	0.58441	33.708	33.384	33.969	0					20	11	3	0	0	0	0.027462	1	1534	1534		39.021	0	1	238100	+		43647	26101	36085	36108	47100	47100					0.04272793927486873
PPVQNIGGVLI	11	Unmodified	_PPVQNIGGVLI_					0	0	0		tr|A0A553SNG0|A0A553SNG0_NIACIPhagetailsheathfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_24415PE=4SV=1	tr|A0A553SNG0|A0A553SNG0_NIACIPhagetailsheathfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_24415PE=4SV=1	tr|A0A553SNG0|A0A553SNG0_NIACIPhagetailsheathfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_24415PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8299560546875	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.71191	1	14306	14306		25.574	0	1	245610			43648	33924	36086	36109	47101	47101					0.10094577919812764
PPVRRGAGRP	10	Unmodified	_PPVRRGAGRP_					0	0	0			REV__ENST00000548206.1_1_12:51467853-51477302:-|nuORF	REV__ENST00000548206.1_1_12:51467853-51477302:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8169555664062	2	531.817599	1061.62064	-1.6193	-0.00086116	0.29076	0.00015463	-1.3285	-0.00070653	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.69986	1	11425	11425		30.504	6.3009	1	178650	+		43649	27439	36087	36110	47102	47102					0.09229898134049108
PPVRRGVRDV	10	Unmodified	_PPVRRGVRDV_					0	0	0			REV__ENST00000507881.5_1_5:176873546-176873606:+|nuORF	REV__ENST00000507881.5_1_5:176873546-176873606:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8433837890625	2	575.843813	1149.67307	-2.8608	-0.0016474	1.7444	0.0010045	-1.1164	-0.00064289	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.78463	1	14787	14787		20.947	0.95016	1	356230	+		43650	26905	36088	36111	47103	47103					0.10422436476983421
PPVRRPPDR	9	Unmodified	_PPVRRPPDR_					0	0	0			REV__nc|ENSG00000107581|Q14152-2|EIF3A	REV__nc|ENSG00000107581|Q14152-2|EIF3A	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3165283203125	2	545.317432	1088.62031	-1.7047	-0.0009296	0.076343	4.1631E-05	-1.6283	-0.00088797	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.68424	1	14205	14205		21.96	1.9631	1	202430	+		43651	17852	36089	36112	47104	47104					0.07954478414171717
PPVSPPGPALL	11	Unmodified	_PPVSPPGPALL_					0	0	0		ENST00000506838.5_1_4:668467-669238:+|nuORF	ENST00000506838.5_1_4:668467-669238:+|nuORF	ENST00000506838.5_1_4:668467-669238:+|nuORF	MSMS	OvCa99_classI_Rep5	1	522.8092651367188	2	522.808042	1043.60153	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.64	1	145.64	145.14	146.14	0								0	0	0	0.19474	1	17032	17032		25.574	1.0549	1				43652	12914	36090	36113	47105	47105					0.08147503999771288
PPVTLARRAD	10	Unmodified	_PPVTLARRAD_					0	0	0			REV__ENST00000561100.1_3_15:40212456-40212678:-|nuORF	REV__ENST00000561100.1_3_15:40212456-40212678:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.3181762695312	2	548.317097	1094.61964	-0.12306	-6.7474E-05	-0.73352	-0.0004022	-0.85658	-0.00046968	548.3165681470533	75.391	2.0204	72.16	71.192	73.213	-3.2308					95	41	4	0	0	0	0.70152	1	5948	5948		30.318	1.1682	1	1571700	+		43653	27630	36091	36114	47106	47106					0.07611638974458401
PPVTLQVK	8	Unmodified	_PPVTLQVK_					0	0	0		ENSG00000159166|ENST00000391967|LAD1	REV__nc|ENSG00000154305|Q5JRA6-2|MIA3;REV__ENST00000470521.1_1_1:222791452-222819114:+|nuORF;ENSG00000159166|ENST00000391967|LAD1	REV__nc|ENSG00000154305|Q5JRA6-2|MIA3	MULTI-SECPEP	OvCa99_classI_Rep5	1	441.207275390625	2	441.276378	880.538203	1.6242	0.00071671	-0.95448	-0.00042119	0.66971	0.00029553	441.2753125807996	45.872	0.22467	45.872	45.71	45.934	0					6	4	2	0	0	0	0.028476	1	3196	3196		12.959	5.2689	1	31722			43654	20376;26262;5989	36092	36115	47107	47107					0.09315563282518724
PPVVAGGNRSN	11	Unmodified	_PPVVAGGNRSN_					0	0	0		nc|ENSG00000196236|Q9NQH7-2|XPNPEP3;nc|ENSG00000196236|Q9NQH7-4|XPNPEP3;ENSG00000196236|ENST00000357137|XPNPEP3	nc|ENSG00000196236|Q9NQH7-2|XPNPEP3	nc|ENSG00000196236|Q9NQH7-2|XPNPEP3	MULTI-MSMS	OvCa9_classI_Rep3	3	534.28369140625	2	534.283254	1066.55196	-2.0798	-0.0011112	3.5267	0.0018842	1.4469	0.00077304	534.2851091761327	143.26	1.286	142.27	141.94	143.23	-0.9903					60	25	3	0	0	0	0.69808	1	11905	11905		30.318	2.4355	1	116190			43655	8582	36093	36116	47108	47108					0.021341890436815447
PPVVVPHQPRL	11	Unmodified	_PPVVVPHQPRL_					0	0	0		nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000504717.1_1_22:50942898-50943677:-|nuORF	nc|ENSG00000100258|Q9BU23-2|LMF2	nc|ENSG00000100258|Q9BU23-2|LMF2	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8685302734375	2	619.87204	1237.72953	-3.8587	-0.0023919	-0.31006	-0.00019219	-4.1687	-0.0025841	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.70148	2	15164	15164;15259		29.15	0.3087	1	492670			43656	2035	36094	36117	47109;47110	47109					0.1201706431365892
PPWGTAQLI	9	Unmodified	_PPWGTAQLI_					0	0	0		ENST00000331134.10_1_17:79525206-79525341:-|nuORF	ENST00000331134.10_1_17:79525206-79525341:-|nuORF	ENST00000331134.10_1_17:79525206-79525341:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.78076171875	2	491.77146	981.528367	-0.91626	-0.00045059	-2.2676	-0.0011151	-3.1838	-0.0015657	491.7697402022468	50.502	0.78699	50.502	49.988	50.775	0					25	17	2	0	0	0	0.027462	1	3772	3772		29.15	0	1	90851			43657	10443	36095	36118	47111	47111					0.036863752771296276
PPWKPWKVGGM	11	Unmodified	_PPWKPWKVGGM_					0	0	0		ENST00000465124.1_1_9:127635663-127635906:+|nuORF	ENST00000465124.1_1_9:127635663-127635906:+|nuORF	ENST00000465124.1_1_9:127635663-127635906:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	641.8824462890625	2	641.841894	1281.66923	-3.9692	-0.0025476	1.6721	0.0010732	-2.2971	-0.0014744	641.8431786794441	154.53	0.75211	153.08	152.83	153.58	-1.4516					21	16	2	0	0	0	0.025746	1	15315	15315		40.778	4.3314	1	38054			43658	12266	36096	36119	47112	47112					0.039666306588969746
PPWLYLVFP	9	Unmodified	_PPWLYLVFP_					0	0	0			REV__ENST00000594085.5_1_19:40871466-40871568:+|nuORF	REV__ENST00000594085.5_1_19:40871466-40871568:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.30419921875	2	566.315503	1130.61645	2.067	0.0011706	-2.6422	-0.0014963	-0.57527	-0.00032578	566.8160530773708	102.24	0.46964	102.24	101.87	102.34	0					16	10	2	0	0	0	0.027462	1	11386	11386		29.842	0	1	202500	+		43659	27974	36097	36120	47113	47113					0.056369958677578325
PPWRIHTV	8	Unmodified	_PPWRIHTV_					0	0	0		Harlequin-int_dup413|chr13:22884030-22884897:+|1.0861558209308977|0.0349924675237053|4.96|401.0|25|3|sense	Harlequin-int_dup413|chr13:22884030-22884897:+|1.0861558209308977|0.0349924675237053|4.96|401.0|25|3|sense	Harlequin-int_dup413|chr13:22884030-22884897:+|1.0861558209308977|0.0349924675237053|4.96|401.0|25|3|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.7679443359375	2	503.285069	1004.55558	-2.6589	-0.0013382	-0.43276	-0.0002178	-3.0917	-0.001556	503.2831144569337	49.562	0.72285	46.42	46.2	46.922	-3.1416					29	13	3	0	0	0	0.028476	1	2800	2800		29.15	0	1	31437			43660	14383	36098	36121	47114	47114					0.0534890360817144
PPWSNLVL	8	Unmodified	_PPWSNLVL_					0	0	0			REV__AluSz6_dup29664|chr11:57605301-57605529:-|1.5743849053106609|0.3820210182941402|2.04|429.0|12|2|anti-sense	REV__AluSz6_dup29664|chr11:57605301-57605529:-|1.5743849053106609|0.3820210182941402|2.04|429.0|12|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.740478515625	2	463.260728	924.506903	-1.1986	-0.00055526	-3.3538	-0.0015537	-4.5524	-0.002109	463.2586537250849	73.772	0.52827	70.376	70.076	70.604	-3.3961					12	10	2	0	0	0	0.028476	1	5713	5713		54.765	2.4655	1	50548	+		43661	15619	36099	36122	47115	47115					0.04162990248414644
PPYAKNRKS	9	Unmodified	_PPYAKNRKS_					0	0	0			REV__ENST00000512342.5_1_4:9800851-9889242:-|nuORF	REV__ENST00000512342.5_1_4:9800851-9889242:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.8138427734375	2	530.79854	1059.58253	-0.97899	-0.00051965	0.45485	0.00024144	-0.52414	-0.00027821	530.7987675639761	66.999	1.8325	64.338	63.552	65.384	-2.661					98	36	4	0	0	0	0.027462	1	5208	5208		30.504	2.4222	1	180410	+		43662	17938	36100	36123	47116	47116					0.055119674287197995
PQAELTAE	8	Unmodified	_PQAELTAE_					0	0	0			REV__ENSG00000261873|ENST00000636752|SMIM36	REV__ENSG00000261873|ENST00000636752|SMIM36	MULTI-MSMS	OvCa99_classI_Rep5	1	429.7137451171875	2	429.713808	857.413062	1.8715	0.00080421	-3.2412	-0.0013928	-1.3697	-0.0005886	429.7123767236907	116.93	0.86729	116.93	116.64	117.51	0					39	18	4	0	0	0	0.60331	1	13384	13384		63.306	0	1	636590	+		43663	23571	36101	36124	47117	47117					-0.021347736445363807
PQAHRQIP	8	Unmodified	_PQAHRQIP_					0	0	0		nc|ENSG00000249087|Q8NC38|ZNF436-AS1;ENST00000335648.3_1_1:23695790-23696168:+|nuORF	nc|ENSG00000249087|Q8NC38|ZNF436-AS1	nc|ENSG00000249087|Q8NC38|ZNF436-AS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.94866943359375	2	473.764501	945.514448	-0.6797	-0.00032202	-2.8198	-0.0013359	-3.4995	-0.0016579	473.76284412345245	28.395	0.44794	28.395	28.091	28.539	0					12	8	2	0	0	0	0.028476	1	918	918		35.201	6.9464	1	38436			43664	10501	36102	36125	47118	47118					0.03951142568701016
PQCLYPGAIK	10	Unmodified	_PQCLYPGAIK_					0	0	0		nc|ENSG00000169946|Q8WW38-2|ZFPM2;ZFPM2|p.I1043Kfs*2|1|0.15|ENSG00000169946|chr8:105803210-105803210|T/-|frameshift_variant;ENSG00000169946|ENST00000407775|ZFPM2	nc|ENSG00000169946|Q8WW38-2|ZFPM2	nc|ENSG00000169946|Q8WW38-2|ZFPM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.7720336914062	2	545.291702	1088.56885	-0.78997	-0.00043077	0.73129	0.00039876	-0.058687	-3.2002E-05	545.2920083223672	37.579	0.59596	37.579	37.344	37.94	0					22	12	3	0	0	0	0.026659	1	2095	2095		30.318	4.7437	1	178650			43665	7057	36103	36126	47119	47119					0.028109736052329026
PQDDCGWFNAL	11	Unmodified	_PQDDCGWFNAL_					0	0	0			REV__ENSG00000172482|ENST00000307503|AGXT	REV__ENSG00000172482|ENST00000307503|AGXT	MULTI-MSMS	OvCa9_classI_Rep4_	4	422.51312255859375	3	422.513367	1264.51827	-1.7862	-0.00075468	1.1917	0.00050351	-0.59445	-0.00025116	422.51378528497355	50.235	1.3389	47.094	46.715	48.054	-3.1416					67	25	4	0	0	0	0.69808	2	2873	2873;2883		26.75	15.295	1	335320	+		43666	21704	36104	36127	47120;47121	47120					-0.10340600510380682
PQDDCGWFNAL	11	Unmodified	_PQDDCGWFNAL_					0	0	0			REV__ENSG00000172482|ENST00000307503|AGXT	REV__ENSG00000172482|ENST00000307503|AGXT	MULTI-MATCH	OvCa9_classI_Rep2	2		3	422.513367	1264.51827	-0.96218	-0.00040653	0.49819	0.00021049	-0.46399	-0.00019604	422.51346930142637	50.166	0.94154	47.372	47.083	48.024	-2.794	0.13929	-0.0005638	NaN	26.75	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52115	+		43667	21704	36104	36127							-0.10340600510380682
PQDPLLRDP	9	Unmodified	_PQDPLLRDP_					0	0	0			REV__ENST00000512731.5_1_1:1567737-1568735:+|nuORF	REV__ENST00000512731.5_1_1:1567737-1568735:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.3063354492188	2	525.782556	1049.55056	2.2631	0.0011899	-0.67806	-0.00035651	1.585	0.00083336	525.7822311079642	75.586	1.2263	75.586	75.292	76.518	0					51	30	3	0	0	0	0.027462	1	7493	7493		39.253	8.9351	1	834570	+		43668	23801	36105	36128	47122	47122					0.027765549548803392
PQDVRCSH	8	Unmodified	_PQDVRCSH_					0	0	0			REV__ENST00000534797.5_1_11:503263-503554:-|nuORF	REV__ENST00000534797.5_1_11:503263-503554:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.8096923828125	2	471.216526	940.418499	0.50917	0.00023993	-3.3764	-0.001591	-2.8672	-0.0013511	471.2146273921023	63.552	0.35338	63.552	63.337	63.69	0					14	8	2	0	0	0	0.028476	1	5722	5722		21.96	4.5949	1	251660	+		43669	27274	36106	36129	47123	47123					-0.05409373333691292
PQEAYSHLKSI	11	Unmodified	_PQEAYSHLKSI_					0	0	0		ENST00000560401.5_1_15:84771677-84780823:+|nuORF	ENST00000560401.5_1_15:84771677-84780823:+|nuORF	ENST00000560401.5_1_15:84771677-84780823:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	424.889404296875	3	424.890944	1271.651	-0.11144	-4.7351E-05	-2.4509	-0.0010414	-2.5623	-0.0010887	424.89005057309436	20.59	2.4808	19.252	18.851	21.331	-1.3386					183	49	7	0	0	0	0.68709	1	202	202		34.087	3.7688	1	5179600			43670	13734	36107	36130	47124	47124					0.02604167217896247
PQEINQSNRM	10	Unmodified	_PQEINQSNRM_					0	0	0			REV__tr|A0A553SMU4|A0A553SMU4_NIACIFAD-bindingPCMH-typedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23080PE=4SV=1	REV__tr|A0A553SMU4|A0A553SMU4_NIACIFAD-bindingPCMH-typedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23080PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	406.1979675292969	3	406.19615	1215.56662	0.78384	0.00031839	2.2044	0.00089541	2.9882	0.0012138	406.197128709912	48.271	1.9154	48.271	48.028	49.944	0					118	43	6	0	0	0	0.52439	1	3550	3550		47.228	3.5769	1	22349000	+		43671	30371	36108	36131	47125	47125					-0.03254106870508622
PQELGPKLL	9	Unmodified	_PQELGPKLL_					0	0	0			REV__ENSG00000110921|ENST00000228510|MVK	REV__ENSG00000110921|ENST00000228510|MVK	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.2861328125	2	497.800217	993.585882	0.42338	0.00021076	-1.1413	-0.00056815	-0.71795	-0.00035739	497.79940789199844	63.394	0.51076	63.394	63.179	63.69	0					22	12	2	0	0	0	0.027402	1	5689	5689		66.429	16.988	1	551510	+		43672	18008	36109	36132	47126	47126					0.0888321748270755
PQELGPKLL	9	Unmodified	_PQELGPKLL_					0	0	0			REV__ENSG00000110921|ENST00000228510|MVK	REV__ENSG00000110921|ENST00000228510|MVK	MULTI-MATCH	OvCa9_classI_Rep2	2		2	497.800217	993.585882	1.0208	0.00050814	-1.5706	-0.00078187	-0.54988	-0.00027373	497.7992719394745	65.939	0.59448	63.243	62.972	63.567	-2.6958	-0.063531	-0.00064084	NaN	66.429	38	11	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214900	+		43673	18008	36109	36132							0.0888321748270755
PQELGPKLL	9	Unmodified	_PQELGPKLL_					0	0	0			REV__ENSG00000110921|ENST00000228510|MVK	REV__ENSG00000110921|ENST00000228510|MVK	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	497.800217	993.585882	-0.23144	-0.00011521	0.30673	0.00015269	0.07529	3.7479E-05	497.80014011062383	66.773	0.68857	63.282	62.951	63.64	-3.4902	-0.024289	0.0012283	NaN	66.429	36	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271910	+		43674	18008	36109	36132							0.0888321748270755
PQEMKQIIK	9	Unmodified	_PQEMKQIIK_					0	0	0		ENSG00000175792|ENST00000322623|RUVBL1	ENSG00000175792|ENST00000322623|RUVBL1	ENSG00000175792|ENST00000322623|RUVBL1	MULTI-MSMS	OvCa99_classI_Rep5	1	557.8203125	2	557.818084	1113.62162	-0.38776	-0.0002163	3.4955	0.0019499	3.1078	0.0017336	557.820297901248	34.982	1.167	34.982	34.772	35.939	0					76	24	5	0	0	0	0.38529	1	1744	1744		53.351	0	1	4576700			43675	7564	36110	36133	47127	47127					0.06934931668070021
PQEPNRVGP	9	Unmodified	_PQEPNRVGP_					0	0	0		ENST00000587091.5_2_X:73751613-73751946:+|nuORF	ENST00000587091.5_2_X:73751613-73751946:+|nuORF	ENST00000587091.5_2_X:73751613-73751946:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.2275390625	2	497.259248	992.503943	2.3779	0.0011825	-0.40387	-0.00020083	1.9741	0.00098162	497.2591860627397	94.636	0.64139	94.636	94.433	95.075	0					20	14	2	0	0	0	0.027462	1	10322	10322		35.618	12.576	1	273840			43676	14057	36111	36134	47128	47128					0.007391151236220139
PQESPPWVCV	10	Unmodified	_PQESPPWVCV_					0	0	0			REV__nc|ENSG00000225697|Q9BXS9-7|SLC26A6	REV__nc|ENSG00000225697|Q9BXS9-7|SLC26A6	MULTI-SECPEP	OvCa9_classI_Rep3	3	570.8243408203125	2	571.270967	1140.52738	-1.4016	-0.00080068	-2.2939	-0.0013104	-3.6955	-0.0021111	571.2694685701431	83.67	0.95103	81.409	81.116	82.067	-2.261					47	20	3	0	0	0	0.026523	1	4838	4838		52.937	8.5595	1	375470	+		43677	29140	36112	36135	47129	47129					-0.03726207154090844
PQESPPWVCV	10	Unmodified	_PQESPPWVCV_					0	0	0			REV__nc|ENSG00000225697|Q9BXS9-7|SLC26A6	REV__nc|ENSG00000225697|Q9BXS9-7|SLC26A6	MULTI-MATCH	OvCa99_classI_Rep5	1		2	571.270967	1140.52738	0.92519	0.00052854	-2.1021	-0.0012009	-1.1769	-0.00067235	571.2695852108586	81.515	0.52501	81.515	81.329	81.854	0	0.0071339	0.00093384	NaN	52.937	31	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1986100	+		43678	29140	36112	36135							-0.03726207154090844
PQESSSQGKP	10	Unmodified	_PQESSSQGKP_					0	0	0		ENST00000522245.1_1_8:27311571-27312006:+|nuORF	ENST00000522245.1_1_8:27311571-27312006:+|nuORF	ENST00000522245.1_1_8:27311571-27312006:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	522.7518920898438	2	522.751453	1043.48835	3.3759	0.0017648	-2.7303	-0.0014273	0.64564	0.00033751	522.7498693889222	26.205	1.4035	23.495	23.207	24.61	-2.7097					77	38	3	0	0	0	0.53807	1	341	341		49.536	3.0793	1	431350			43679	13136	36113	36136	47130	47130					-0.031652161840838744
PQEVLMPEP	9	Unmodified	_PQEVLMPEP_					0	0	0			REV__ENST00000395812.6_1_5:95998196-96058385:+|nuORF	REV__ENST00000395812.6_1_5:95998196-96058385:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.274658203125	2	520.260068	1038.50558	-1.0842	-0.00056407	4.2663	0.0022196	3.1821	0.0016555	520.2620016877338	41.623	0.73718	41.623	41.33	42.068	0					23	16	2	0	0	0	0.027462	1	2600	2600		5.9211	0	1	157290	+		43680	24607	36114	36137	47131	47131					-0.012130119026551256
PQFLAPSP	8	Unmodified	_PQFLAPSP_					0	0	0			REV__ENST00000530298.5_1_1:156807654-156845592:+|nuORF	REV__ENST00000530298.5_1_1:156807654-156845592:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	429.3016052246094	2	428.731803	855.449054	0.76826	0.00032938	-0.94315	-0.00040436	-0.17489	-7.4982E-05	428.7313075948363	66.835	0.52115	66.835	66.575	67.096	0					20	12	2	0	0	0	0.028476	1	6223	6223		37.159	0	1	946600	+		43681	27201	36115	36138	47132	47132					0.015547283230034736
PQFLSPQVQ	9	Unmodified	_PQFLSPQVQ_					0	0	0		ENSG00000078687|ENST00000696270|TNRC6C;nc|ENSG00000078687|Q9HCJ0-4|TNRC6C;nc|ENSG00000078687|Q9HCJ0-2|TNRC6C;nc|ENSG00000078687|Q9HCJ0-1|TNRC6C	ENSG00000078687|ENST00000696270|TNRC6C	ENSG00000078687|ENST00000696270|TNRC6C	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.2799072265625	2	522.279649	1042.54475	-0.20632	-0.00010776	2.7831	0.0014536	2.5768	0.0013458	522.2809816170394	122.35	1.6072	120.99	120.44	122.05	-1.3666					59	31	3	0	0	0	0.44568	1	11571	11571		47.657	3.2801	1	98359			43682	1598	36116	36139	47133	47133					0.025174564432290936
PQFQVTVE	8	Unmodified	_PQFQVTVE_					0	0	0			REV__ENST00000355621.7_1_7:129471417-129471567:-|nuORF	REV__ENST00000355621.7_1_7:129471417-129471567:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.259765625	2	474.245275	946.475997	-0.75571	-0.00035839	0.46535	0.00022069	-0.29036	-0.0001377	474.24534123045055	104.56	0.46341	104.56	104.32	104.79	0					19	10	2	0	0	0	0.028476	1	11700	11700		82.305	0	1	578210	+		43683	24750	36117	36140	47134	47134					0.0006179214353778661
PQFRELGY	8	Unmodified	_PQFRELGY_					0	0	0		ENSG00000154764|ENST00000285018|WNT7A	ENSG00000154764|ENST00000285018|WNT7A	ENSG00000154764|ENST00000285018|WNT7A	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.2460632324219	2	505.258717	1008.50288	-0.072667	-3.6715E-05	-4.1085	-0.0020759	-4.1812	-0.0021126	505.2565386472244	45.034	0.27362	45.034	44.795	45.068	0					8	5	2	0	0	0	0.028476	1	3062	3062		33.516	5.6333	1	51211			43684	5752	36118	36141	47135	47135					-0.0010309924527973635
PQFVYQVI	8	Unmodified	_PQFVYQVI_					0	0	0		tr|A0A7D7A1V5|A0A7D7A1V5_9CLOTflagellarmotorswitchproteinFliMOS=ClostridiumintestinaleOX=36845GN=fliMPE=3SV=1	tr|A0A7D7A1V5|A0A7D7A1V5_9CLOTflagellarmotorswitchproteinFliMOS=ClostridiumintestinaleOX=36845GN=fliMPE=3SV=1	tr|A0A7D7A1V5|A0A7D7A1V5_9CLOTflagellarmotorswitchproteinFliMOS=ClostridiumintestinaleOX=36845GN=fliMPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.80706787109375	2	497.273835	992.533118	-0.60669	-0.00030169	-3.0439	-0.0015136	-3.6506	-0.0018153	497.27262207745036	61.451	0.34487	61.451	61.156	61.501	0					10	7	2	0	0	0	0.028476	1	5389	5389		19.36	5.2229	1	145010			43685	36049	36119	36142	47136	47136					0.03655259419895174
PQGAMMEYML	10	Unmodified	_PQGAMMEYML_					0	0	0			REV__ENSG00000171132|ENST00000306156|PRKCE	REV__ENSG00000171132|ENST00000306156|PRKCE	MULTI-MSMS	OvCa9_classI_Rep4_	4	585.7527465820312	2	585.753238	1169.49192	-0.14149	-8.2878E-05	0.070892	4.1525E-05	-0.070597	-4.1353E-05	585.7530201042857	122.87	1.0414	121.5	121.16	122.2	-1.3666					44	20	3	0	0	0	0.52321	1	11600	11600		51.335	7.2187	1	91285	+		43686	21596	36120	36143	47137	47137					-0.08604328997739685
PQGAMMEYML	10	Unmodified	_PQGAMMEYML_					0	0	0			REV__ENSG00000171132|ENST00000306156|PRKCE	REV__ENSG00000171132|ENST00000306156|PRKCE	MULTI-MATCH	OvCa9_classI_Rep2	2		2	585.753238	1169.49192	-0.73295	-0.00042933	0.7827	0.00045847	0.049748	2.914E-05	585.7534610304854	121.9	0.98991	121.7	121.4	122.39	-0.19718	0.16756	0.00055808	NaN	51.335	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70006	+		43687	21596	36120	36143							-0.08604328997739685
PQGAMMEYML	10	Unmodified	_PQGAMMEYML_					0	0	0			REV__ENSG00000171132|ENST00000306156|PRKCE	REV__ENSG00000171132|ENST00000306156|PRKCE	MULTI-MATCH	OvCa9_classI_Rep3	3		2	585.753238	1169.49192	-0.056404	-3.3039E-05	-0.045473	-2.6636E-05	-0.10188	-5.9675E-05	585.7531078296221	122.43	1.2574	121.4	121.16	122.42	-1.0286	-0.13255	-0.00041213	NaN	51.335	51	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108320	+		43688	21596	36120	36143							-0.08604328997739685
PQGGCCGLLLL	11	2 Carbamidomethyl (C)	_PQGGC(Carbamidomethyl (C))C(Carbamidomethyl (C))GLLLL_	PQGGC(1)C(1)GLLLL		PQGGC(46)C(46)GLLLL		0	2	0			REV__ENST00000585105.5_1_17:73472797-73482194:+|nuORF	REV__ENST00000585105.5_1_17:73472797-73482194:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	594.2999267578125	2	594.299201	1186.58385	1.4919	0.00088664	-0.60999	-0.00036252	0.88192	0.00052412	594.2984364588517	147.06	0.53957	147.06	146.82	147.36	0					25	10	3	0	0	0	0.58594	1	17206	17206		45.952	6.6991	1	110130	+		43689	22024	36121	36144	47138	47138	252;253				-0.0019790258904777147
PQGTCKLL	8	Unmodified	_PQGTCKLL_					0	0	0		ENST00000586933.5_1_19:37342773-37363470:+|nuORF	ENST00000586933.5_1_19:37342773-37363470:+|nuORF	ENST00000586933.5_1_19:37342773-37363470:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	430.2409362792969	2	430.238938	858.463324	0.23131	9.9517E-05	4.3028	0.0018512	4.5341	0.0019507	430.24065840760977	32.772	0.73264	32.772	32.602	33.335	0					29	14	3	0	0	0	0.70469	1	1460	1460		42.396	1.8235	1	391270			43690	14053	36122	36145	47139	47139					0.028430574796402652
PQHCYGIQV	9	Unmodified	_PQHCYGIQV_					0	0	0		ENST00000425637.2_1_12:123738829-123738982:+|nuORF	ENST00000425637.2_1_12:123738829-123738982:+|nuORF	ENST00000425637.2_1_12:123738829-123738982:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	522.7511596679688	2	522.750201	1043.48585	3.3759	0.0017648	-0.33678	-0.00017605	3.0392	0.0015887	522.7498693889222	26.205	1.4035	23.495	23.207	24.61	-2.7097					77	38	3	0	0	0	0.6653	1	384	384		24.203	1.1603	1	431350			43691	11722	36123	36146	47140	47140					-0.034153431227423425
PQHLRRGQA	9	Unmodified	_PQHLRRGQA_					0	0	0			REV__MST1R|p.P1307H|1|0.12|ENSG00000164078|chr3:49889951-49889951|G/T|missense_variant	REV__MST1R|p.P1307H|1|0.12|ENSG00000164078|chr3:49889951-49889951|G/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.762939453125	2	531.799406	1061.58426	1.2902	0.00068615	0.94388	0.00050195	2.2341	0.0011881	531.8001506370069	113.38	1.0769	112.31	112.01	113.08	-1.0753					38	20	4	0	0	0	0.027462	1	8347	8347		30.504	11.4	1	46286	+		43692	28681	36124	36147	47141	47141					0.05593021237314133
PQHSLVAG	8	Unmodified	_PQHSLVAG_					0	0	0			REV__nc|ENSG00000101115|Q9UJQ4-2|SALL4	REV__nc|ENSG00000101115|Q9UJQ4-2|SALL4	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.7068786621094	2	404.719227	807.423902	1.1998	0.00048557	-3.4829	-0.0014096	-2.2831	-0.00092403	404.7182286181869	43.132	0.25884	43.132	42.926	43.185	0					7	5	2	0	0	0	0.028476	1	2830	2830		38.806	0	1	83602	+		43693	17473	36125	36148	47142	47142					0.012486735204220167
PQIEREFC	8	Unmodified	_PQIEREFC_					0	0	0		nc|ENSG00000173531|P26927|MST1;ENSG00000173531|ENST00000449682|MST1;ENST00000442552.7_1_1:17085068-17087541:-|nuORF;nc|ENSG00000186715|Q2TV78-2|MST1L;nc|ENSG00000186715|Q2TV78|MST1L	nc|ENSG00000173531|P26927|MST1	nc|ENSG00000173531|P26927|MST1	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.7861022949219	2	511.242209	1020.46987	2.5762	0.0013171	-2.8944	-0.0014797	-0.31817	-0.00016266	511.2403144679788	94.578	0.42794	94.578	94.433	94.861	0					16	9	3	0	0	0	0.028476	1	10330	10330		45.952	13.997	1	199510			43694	7385	36126	36149	47143	47143					-0.03955049359649365
PQINQRLK	8	Unmodified	_PQINQRLK_					0	0	0		nc|ENSG00000110693|P35712-3|SOX6;ENSG00000110693|ENST00000683767|SOX6	nc|ENSG00000110693|P35712-3|SOX6	nc|ENSG00000110693|P35712-3|SOX6	MULTI-MSMS	OvCa9_classI_Rep2	2	498.80072021484375	2	498.801083	995.587613	-1.4377	-0.00071715	0.77807	0.0003881	-0.65968	-0.00032905	498.8014440110007	51.637	2.1267	48.824	48.353	50.48	-2.8129					131	42	5	0	0	0	0.62934	1	3448	3448		57.811	7.7867	1	2284200			43695	2786	36127	36150	47144	47144					0.08964271291324621
PQIPEVRLN	9	Unmodified	_PQIPEVRLN_					0	0	0			REV__tr|A0A553SQT6|A0A553SQT6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07180PE=4SV=1	REV__tr|A0A553SQT6|A0A553SQT6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07180PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.7877197265625	2	533.306198	1064.59784	-1.61	-0.00085862	2.3886	0.0012739	0.77862	0.00041524	533.3072540346491	103.75	1.3137	103.75	103.34	104.66	0					71	30	4	0	0	0	0.027426	1	11615	11615		53.351	9.2347	1	4732200	+		43696	30661	36128	36151	47145	47145					0.06812834225911502
PQIPEVRLN	9	Unmodified	_PQIPEVRLN_					0	0	0			REV__tr|A0A553SQT6|A0A553SQT6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07180PE=4SV=1	REV__tr|A0A553SQT6|A0A553SQT6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07180PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	533.306198	1064.59784	-1.6847	-0.00089844	2.8568	0.0015236	1.1721	0.00062511	533.3075484976409	104.01	0.64355	103.43	103.18	103.82	-0.57639	-0.17512	0.00043958	NaN	35.618	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38611	+		43697	30661	36128	36151							0.06812834225911502
PQIPEVRLN	9	Unmodified	_PQIPEVRLN_					0	0	0			REV__tr|A0A553SQT6|A0A553SQT6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07180PE=4SV=1	REV__tr|A0A553SQT6|A0A553SQT6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07180PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	533.306198	1064.59784	0.92059	0.00049096	1.2686	0.00067657	2.1892	0.0011675	533.3067094038247	104.97	0.41768	103.62	103.42	103.83	-1.3482	0.01321	-0.0012544	NaN	35.618	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39838	+		43698	30661	36128	36151							0.06812834225911502
PQIPEVRLN	9	Unmodified	_PQIPEVRLN_					0	0	0			REV__tr|A0A553SQT6|A0A553SQT6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07180PE=4SV=1	REV__tr|A0A553SQT6|A0A553SQT6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07180PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	533.306198	1064.59784	-1.0687	-0.00056996	2.7706	0.0014776	1.7019	0.00090764	533.3073496426132	105.64	0.44588	103.62	103.35	103.79	-2.0161	0.014539	0.00034766	NaN	35.618	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37498	+		43699	30661	36128	36151							0.06812834225911502
PQIPNILLAR	10	Unmodified	_PQIPNILLAR_					0	0	0		ENST00000488598.5_1_11:126160388-126160466:+|nuORF	ENST00000488598.5_1_11:126160388-126160466:+|nuORF	ENST00000488598.5_1_11:126160388-126160466:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.274169921875	2	567.853316	1133.69208	0.10448	5.9329E-05	-0.74534	-0.00042325	-0.64086	-0.00036392	567.8520743575881	30.802	0.44342	30.802	30.632	31.076	0					14	8	3	0	0	0	0.027118	1	1241	1241		8.6937	0	1	56313			43700	12668	36129	36152	47146	47146					0.13057973048057647
PQKAPRELC	9	Unmodified	_PQKAPRELC_					0	0	0		chr8:27598166-27598460|93|156.15|0.01|14.47|-|0|None,CLU|1	chr8:27598166-27598460|93|156.15|0.01|14.47|-|0|None,CLU|1	chr8:27598166-27598460|93|156.15|0.01|14.47|-|0|None,CLU|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.82763671875	2	521.279126	1040.5437	-0.80193	-0.00041803	4.0552	0.0021139	3.2533	0.0016959	521.2812371008398	23.361	0.64862	23.361	23.144	23.793	0					15	12	2	0	0	0	0.027462	1	361	361		17.365	0.89182	1	48767			43701	544	36130	36153	47147	47147					0.02504918802674183
PQKAVRWIL	9	Unmodified	_PQKAVRWIL_					0	0	0		ENSG00000058799|ENST00000072644|YIPF1;nc|ENSG00000058799|Q9Y548-2|YIPF1	ENSG00000058799|ENST00000072644|YIPF1	ENSG00000058799|ENST00000072644|YIPF1	MULTI-MSMS	OvCa9_classI_Rep3	3	555.840576171875	2	555.842751	1109.67095	0.44243	0.00024592	-4.3727	-0.0024305	-3.9303	-0.0021846	555.840193227491	67.597	0.94734	64.709	64.441	65.388	-2.8873					41	18	3	0	0	0	0.59983	1	2865	2865		31.955	0.42505	1	119210			43702	1249	36131	36154	47148	47148					0.12050007739162538
PQKEGDNKE	9	Unmodified	_PQKEGDNKE_					0	0	0			REV__ENSG00000143079|ENST00000271277|CTTNBP2NL	REV__ENSG00000143079|ENST00000271277|CTTNBP2NL	MULTI-MSMS	OvCa9_classI_Rep2	2	522.7515869140625	2	522.751453	1043.48835	3.3759	0.0017648	-2.7303	-0.0014273	0.64564	0.00033751	522.7498693889222	26.205	1.4035	23.495	23.207	24.61	-2.7097					77	38	3	0	0	0	0.29519	1	335	335		63.534	5.3039	1	431350	+		43703	19814	36132	36155	47149	47149					-0.03165216184106612
PQKGRKPRDL	10	Unmodified	_PQKGRKPRDL_					0	0	0		ENSG00000126767|ENST00000376983|ELK1	ENSG00000126767|ENST00000376983|ELK1	ENSG00000126767|ENST00000376983|ELK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8568725585938	2	597.856921	1193.69929	-2.8966	-0.0017318	1.9	0.0011359	-0.99657	-0.00059581	597.8578774207725	151.94	0.86153	150.51	150.22	151.08	-1.4351					43	18	3	0	0	0	0.7759	1	15079	15079		21.96	1.013	1	32541			43704	3798	36133	36156	47150	47150					0.11018705648461946
PQKIPFLIPF	10	Unmodified	_PQKIPFLIPF_					0	0	0			REV__nc|ENSG00000100462|O14744-4|PRMT5	REV__nc|ENSG00000100462|O14744-4|PRMT5	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.24755859375	3	400.577749	1198.71142	0.62922	0.00025205	1.882	0.00075389	2.5112	0.0010059	400.57846164215107	28.265	0.49778	28.265	28.14	28.638	0					15	9	2	0	0	0	0.027268	1	900	900		23.523	8.1852	1	139420	+		43705	17420	36134	36157	47151	47151					0.1200092933893302
PQKITRNGVVR	11	Unmodified	_PQKITRNGVVR_					0	0	0		tr|A0A7D6VQ84|A0A7D6VQ84_9CLOTAryl-sulfatesulfotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19800PE=4SV=1	tr|A0A7D6VQ84|A0A7D6VQ84_9CLOTAryl-sulfatesulfotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19800PE=4SV=1	tr|A0A7D6VQ84|A0A7D6VQ84_9CLOTAryl-sulfatesulfotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19800PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	634.8787841796875	2	634.383303	1266.75205	-5.7659	-0.0036578	-2.4863	-0.0015773	-8.2521	-0.005235	634.3814892688545	163.56	1.4089	163.33	162.75	164.16	-0.22696					114	47	3	0	0	0	0.72511	1	16705	16705		14.137	0.68308	1	320930			43706	34828	36135	36158	47152	47152					0.129346637112576
PQKLKIQPHS	10	Unmodified	_PQKLKIQPHS_					0	0	0		nc|ENSG00000101180|Q9Y5N1-5|HRH3;nc|ENSG00000101180|Q9Y5N1-6|HRH3;nc|ENSG00000101180|Q9Y5N1-3|HRH3;nc|ENSG00000101180|Q9Y5N1-7|HRH3;nc|ENSG00000101180|Q9Y5N1-4|HRH3;ENSG00000101180|ENST00000340177|HRH3;nc|ENSG00000101180|Q9Y5N1-2|HRH3	nc|ENSG00000101180|Q9Y5N1-5|HRH3	nc|ENSG00000101180|Q9Y5N1-5|HRH3	MULTI-MSMS	OvCa9_classI_Rep2	2	588.3480834960938	2	588.348397	1174.68224	-1.7548	-0.0010324	1.6869	0.00099251	-0.067867	-3.9929E-05	588.3492584572326	34.182	0.98975	31.472	31.168	32.158	-2.7097					48	19	3	0	0	0	0.52439	2	1296	1283;1296		51.193	14.034	1	164020			43707	2145	36136	36159	47153;47154	47154					0.10188785042646487
PQKLKIQPHS	10	Unmodified	_PQKLKIQPHS_					0	0	0		nc|ENSG00000101180|Q9Y5N1-5|HRH3;nc|ENSG00000101180|Q9Y5N1-6|HRH3;nc|ENSG00000101180|Q9Y5N1-3|HRH3;nc|ENSG00000101180|Q9Y5N1-7|HRH3;nc|ENSG00000101180|Q9Y5N1-4|HRH3;ENSG00000101180|ENST00000340177|HRH3;nc|ENSG00000101180|Q9Y5N1-2|HRH3	nc|ENSG00000101180|Q9Y5N1-5|HRH3	nc|ENSG00000101180|Q9Y5N1-5|HRH3	MULTI-MSMS	OvCa9_classI_Rep4_	4	588.3484497070312	2	588.348397	1174.68224	0.45677	0.00026874	-0.45757	-0.00026921	-0.00079463	-4.6752E-07	588.3479881563707	32.763	1.7903	30.067	29.403	31.193	-2.6954					123	40	4	0	0	0	0.39172	3	835	765;823;835		69.628	7.723	1	200610			43708	2145	36136	36159	47155;47156;47157	47157					0.10188785042646487
PQKLKIQPHS	10	Unmodified	_PQKLKIQPHS_					0	0	0		nc|ENSG00000101180|Q9Y5N1-5|HRH3;nc|ENSG00000101180|Q9Y5N1-6|HRH3;nc|ENSG00000101180|Q9Y5N1-3|HRH3;nc|ENSG00000101180|Q9Y5N1-7|HRH3;nc|ENSG00000101180|Q9Y5N1-4|HRH3;ENSG00000101180|ENST00000340177|HRH3;nc|ENSG00000101180|Q9Y5N1-2|HRH3	nc|ENSG00000101180|Q9Y5N1-5|HRH3	nc|ENSG00000101180|Q9Y5N1-5|HRH3	MULTI-MATCH	OvCa99_classI_Rep5	1		2	588.348397	1174.68224	-0.0043674	-2.5695E-06	9.0064	0.0052989	9.002	0.0052963	588.353710893667	31.787	0.24836	31.787	31.608	31.857	0	0.060416	0.0081708	NaN	51.193	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13009			43709	2145	36136	36159							0.10188785042646487
PQKLKIQPHS	10	Unmodified	_PQKLKIQPHS_					0	0	0		nc|ENSG00000101180|Q9Y5N1-5|HRH3;nc|ENSG00000101180|Q9Y5N1-6|HRH3;nc|ENSG00000101180|Q9Y5N1-3|HRH3;nc|ENSG00000101180|Q9Y5N1-7|HRH3;nc|ENSG00000101180|Q9Y5N1-4|HRH3;ENSG00000101180|ENST00000340177|HRH3;nc|ENSG00000101180|Q9Y5N1-2|HRH3	nc|ENSG00000101180|Q9Y5N1-5|HRH3	nc|ENSG00000101180|Q9Y5N1-5|HRH3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	588.348397	1174.68224	0.59125	0.00034786	-0.47139	-0.00027734	0.11985	7.0516E-05	588.3476714391821	34.709	0.60337	31.921	31.747	32.351	-2.7881	0.19441	-0.0029817	NaN	51.193	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14383			43710	2145	36136	36159							0.10188785042646487
PQKLLPHISHL	11	Unmodified	_PQKLLPHISHL_					0	0	0		ENST00000592946.1_1_19:44611149-44611236:-|nuORF	ENST00000592946.1_1_19:44611149-44611236:-|nuORF	ENST00000592946.1_1_19:44611149-44611236:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8816528320312	2	641.885147	1281.75574	-3.6311	-0.0023307	-0.33677	-0.00021616	-3.9678	-0.0025469	641.8847801872174	153.39	4.0845	151.94	150.68	154.77	-1.4516					420	106	6	0	0	0	0.69455	1	15339	15339		31.53	3.6476	1	809780			43711	14146	36137	36160	47158	47158					0.12613333485114708
PQKVRALGKN	10	Unmodified	_PQKVRALGKN_					0	0	0		nc|ENSG00000012061|P07992-3|ERCC1	nc|ENSG00000012061|P07992-3|ERCC1	nc|ENSG00000012061|P07992-3|ERCC1	MULTI-MSMS	OvCa9_classI_Rep3	3	555.8407592773438	2	555.840739	1109.66693	0.44243	0.00024592	-0.75412	-0.00041917	-0.31169	-0.00017325	555.840193227491	67.597	0.94734	64.709	64.441	65.388	-2.8873					41	18	3	0	0	0	0.72319	1	2870	2870		27.882	1.1893	1	119210			43712	14864	36138	36161	47159	47159					0.11647918245466826
PQLHIAWL	8	Unmodified	_PQLHIAWL_					0	0	0			REV__ENST00000396426.7_1_22:42393921-42394134:+|nuORF	REV__ENST00000396426.7_1_22:42393921-42394134:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	489.2809143066406	2	489.281995	976.549437	1.5227	0.00074503	-1.6851	-0.00082448	-0.1624	-7.9458E-05	489.2810118435781	128.83	1.0391	128.6	128.38	129.42	-0.22697					35	20	3	0	0	0	0.74971	1	12643	12643		26.796	0	1	48216	+		43713	25332	36139	36162	47160	47160					0.06022385376638795
PQLIPVGT	8	Unmodified	_PQLIPVGT_					0	0	0			REV__ENST00000485682.6_2_11:2422320-2422626:+|nuORF	REV__ENST00000485682.6_2_11:2422320-2422626:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	412.7458190917969	2	412.747453	823.480354	0.75275	0.0003107	-3.7611	-0.0015524	-3.0083	-0.0012417	412.74581316945023	134.99	1.618	134.76	134.29	135.91	-0.22696					65	32	3	0	0	0	0.75241	1	13347	13347		25.45	1.2474	1	284470	+		43714	26566	36140	36163	47161	47161					0.06155301357091503
PQLIQDLSP	9	Unmodified	_PQLIQDLSP_					0	0	0			REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.3249816894531	2	505.779482	1009.54441	-0.11887	-6.0121E-05	0.22933	0.00011599	0.11046	5.587E-05	505.77960420189436	105	0.83324	103.66	103.36	104.2	-1.3482					26	15	2	0	0	0	0.027462	1	7403	7403		42.396	2.338	1	23182	+		43715	16911	36141	36164	47162	47162					0.04002036723386482
PQLIRRRAN	9	Unmodified	_PQLIRRRAN_					0	0	0			REV__nc|ENSG00000165495|Q96KN3-2|PKNOX2	REV__nc|ENSG00000165495|Q96KN3-2|PKNOX2	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3433837890625	2	562.343981	1122.67341	1.2434	0.00069921	-2.2131	-0.0012445	-0.96974	-0.00054533	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.6653	1	14104	14104		24.203	1.1603	1	683710	+		43716	21094	36142	36165	47163	47163					0.11697856196838075
PQLKSRTGKL	10	Unmodified	_PQLKSRTGKL_					0	0	0		ENSG00000154783|ENST00000285046|FGD5	ENSG00000154783|ENST00000285046|FGD5	ENSG00000154783|ENST00000285046|FGD5	MULTI-MSMS	OvCa9_classI_Rep2	2	564.3504638671875	2	564.348397	1126.68224	0.392	0.00022123	3.4143	0.0019268	3.8063	0.0021481	564.350136987116	133.44	0.78981	133.22	132.97	133.76	-0.22697					36	15	4	0	0	0	0.71173	1	13213	13213		29.17	0.020503	1	72143			43717	5755	36143	36166	47164	47164					0.12396785042665215
PQLKTPPSKLN	11	Unmodified	_PQLKTPPSKLN_					0	0	0		ENSG00000099904|ENST00000334554|ZDHHC8;nc|ENSG00000099904|Q9ULC8-2|ZDHHC8	ENSG00000099904|ENST00000334554|ZDHHC8	ENSG00000099904|ENST00000334554|ZDHHC8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	408.7315673828125	3	408.243317	1221.70812	0.40147	0.0001639	0.84754	0.000346	1.249	0.0005099	408.24355278318194	51.215	0.75083	48.042	47.721	48.472	-3.1734					23	14	2	0	0	0	0.026068	1	2969	2969		11.932	0	1	14798			43718	1986	36144	36167	47165	47165					0.10613634494279722
PQLKTPPSKLN	11	Unmodified	_PQLKTPPSKLN_					0	0	0		ENSG00000099904|ENST00000334554|ZDHHC8;nc|ENSG00000099904|Q9ULC8-2|ZDHHC8	ENSG00000099904|ENST00000334554|ZDHHC8	ENSG00000099904|ENST00000334554|ZDHHC8	MULTI-MATCH	OvCa99_classI_Rep5	1		3	408.243317	1221.70812	0.73715	0.00030094	-0.51517	-0.00021031	0.22198	9.0623E-05	408.24310397856726	48.138	0.34837	48.138	47.984	48.332	0	0.04795	-0.0011435	NaN	16.53	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179730			43719	1986	36144	36167							0.10613634494279722
PQLLGRGAL	9	Unmodified	_PQLLGRGAL_					0	0	0		ENST00000492139.5_3_3:167452060-167452608:-|nuORF	ENST00000492139.5_3_3:167452060-167452608:-|nuORF	ENST00000492139.5_3_3:167452060-167452608:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	462.32476806640625	2	462.784902	923.55525	-0.94361	-0.00043669	1.0038	0.00046453	0.060163	2.7843E-05	462.78521513598224	82.158	1.0454	79.862	79.584	80.629	-2.2963					41	20	3	0	0	0	0.027448	1	4653	4653		53.351	3.3269	1	203480			43720	12722	36145	36168	47166	47166					0.09041483888336188
PQLLLLLEEF	10	Unmodified	_PQLLLLLEEF_					0	0	0			REV__ENSG00000198853|ENST00000361226|RUSC2	REV__ENSG00000198853|ENST00000361226|RUSC2	MULTI-SECPEP	OvCa9_classI_Rep2	2	406.21575927734375	3	405.572552	1213.69583	0.14924	6.0529E-05	-2.433	-0.00098676	-2.2838	-0.00092623	405.571492057206	61.353	1.3071	58.594	57.83	59.137	-2.7593					45	24	2	0	0	0	0.027147	1	4525	4525		20.837	0.80668	1	66921	+		43721	23080	36146	36169	47167	47167					0.09752598031241178
PQLLLLLEEF	10	Unmodified	_PQLLLLLEEF_					0	0	0			REV__ENSG00000198853|ENST00000361226|RUSC2	REV__ENSG00000198853|ENST00000361226|RUSC2	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	405.572552	1213.69583	1.6126	0.00065402	-4.3389	-0.0017597	-2.7263	-0.0011057	405.9052689887173	61.658	0.46513	58.2	58.01	58.475	-3.4577	-0.19691	-0.0019696	NaN	10.587	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35909	+		43722	23080	36146	36169							0.09752598031241178
PQLLPIHTL	9	Unmodified	_PQLLPIHTL_					0	0	0		ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D;ENST00000511715.1_1_4:119652437-119654049:-|nuORF;RAB33B-SEC24D|1|fusion	ENSG00000150961|ENST00000280551|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.326416015625	2	516.316035	1030.61752	0.069233	3.5746E-05	-0.372	-0.00019207	-0.30277	-0.00015632	516.3156906161828	111.98	0.63216	110.47	110.21	110.84	-1.5111					17	11	2	0	0	0	0.027462	1	10331	10331		35.618	5.1146	1	8348.9			43723	5524	36147	36170	47168	47168					0.10343210236646883
PQLLPPLPGQ	10	Unmodified	_PQLLPPLPGQ_					0	0	0		ENST00000373582.3_1_1:32712892-32713057:+|nuORF	ENST00000373582.3_1_1:32712892-32713057:+|nuORF	ENST00000373582.3_1_1:32712892-32713057:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.294677734375	2	530.313492	1058.61243	2.3695	0.0012566	3.006	0.0015941	5.3755	0.0028507	530.3148845109492	88.887	0.44575	88.887	88.637	89.082	0					24	10	3	0	0	0	0.026956	1	9481	9481		19.997	0	1	770920			43724	11011	36148	36171	47169	47169					0.08546906374044738
PQLLSCCR	8	Unmodified	_PQLLSCCR_					0	0	0		chrX:118419411-118432781|190|10.3|0.42|4.6|+|1|TE_info:L1PB1,L1PB1_dup8380,L1,LINE,donor,-,118415804,118419411|None,WDR44|15	chrX:118419411-118432781|190|10.3|0.42|4.6|+|1|TE_info:L1PB1,L1PB1_dup8380,L1,LINE,donor,-,118415804,118419411|None,WDR44|15	chrX:118419411-118432781|190|10.3|0.42|4.6|+|1|TE_info:L1PB1,L1PB1_dup8380,L1,LINE,donor,-,118415804,118419411|None,WDR44|15	MULTI-MSMS	OvCa99_classI_Rep5	1	460.2297668457031	2	460.228048	918.441542	1.2983	0.00059749	1.6347	0.00075236	2.933	0.0013498	460.2286735408768	138.68	1.3013	138.68	138.4	139.7	0					55	26	3	0	0	0	0.50674	1	16192	16192		76.847	0	1	1373900			43725	563	36149	36172	47170	47170					-0.020940705405905646
PQLRVVTQP	9	Unmodified	_PQLRVVTQP_					0	0	0		ENST00000531863.5_1_11:66276783-66276999:+|nuORF	ENST00000531863.5_1_11:66276783-66276999:+|nuORF	ENST00000531863.5_1_11:66276783-66276999:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.7779541015625	2	519.308741	1036.60293	0.021289	1.1055E-05	-0.35351	-0.00018358	-0.33222	-0.00017252	519.3085405488631	78.523	1.5986	76.17	75.8	77.399	-2.3527					70	31	3	0	0	0	0.027455	1	4195	4195		34.173	8.7224	1	621280			43726	13315	36150	36173	47171	47171					0.08609138088513646
PQLSGLHRCY	10	Unmodified	_PQLSGLHRCY_					0	0	0			REV__SVA_B_dup173|chr4:48185818-48187447:+|1.7426897649738875|0.0421009603888101|5.37|413.0|1|1|sense	REV__SVA_B_dup173|chr4:48185818-48187447:+|1.7426897649738875|0.0421009603888101|5.37|413.0|1|1|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	587.2943115234375	2	587.295307	1172.57606	-1.5529	-0.000912	1.0401	0.00061083	-0.5128	-0.00030117	587.29575999412	117.87	0.74495	117.72	117.34	118.08	-0.14755					53	14	4	0	0	0	0.71192	1	11332	11332		29.15	0	1	675310	+		43727	29466	36151	36174	47172	47172					-0.0033229379432668793
PQLVRVTR	8	Unmodified	_PQLVRVTR_					0	0	0			REV__CACNA1G|p.R186Q|1|1.0|ENSG00000006283|chr17:50569774-50569774|G/A|missense_variant	REV__CACNA1G|p.R186Q|1|1.0|ENSG00000006283|chr17:50569774-50569774|G/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	485.237060546875	2	484.803626	967.592698	-0.75517	-0.00036611	0.65198	0.00031608	-0.10319	-5.0027E-05	484.80375827694786	56.882	1.5884	54.086	53.581	55.169	-2.7956					58	31	2	0	0	0	0.028476	1	3999	3999		29.15	3.6994	1	306100	+		43728	15729	36152	36175	47173	47173					0.10760575153949503
PQMRLPVPVA	10	Unmodified	_PQMRLPVPVA_					0	0	0			REV__ENST00000584908.5_1_17:37856482-37868536:+|nuORF	REV__ENST00000584908.5_1_17:37856482-37868536:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	553.8006591796875	2	554.320794	1106.62703	0.14861	8.2379E-05	4.3363	0.0024037	4.4849	0.0024861	554.3230226222802	59.979	0.25858	57.208	57.032	57.291	-2.7702					6	4	2	0	0	0	0.027021	1	4385	4385		21.96	7.095	1	9573.5	+		43729	27849	36153	36176	47174	47174					0.07798655250530828
PQNELHEEL	9	Unmodified	_PQNELHEEL_					0	0	0			REV__ENSG00000164023|ENST00000690982|SGMS2	REV__ENSG00000164023|ENST00000690982|SGMS2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.3026733398438	2	554.767103	1107.51965	-0.21746	-0.00012064	-0.49117	-0.00027248	-0.70863	-0.00039312	554.7667512324953	74.069	1.1463	70.838	70.579	71.726	-3.2308					33	23	2	0	0	0	0.027461	1	5879	5879		32.812	0.85756	1	148770	+		43730	20922	36154	36177	47175	47175					-0.02980643149999196
PQNELHEEL	9	Unmodified	_PQNELHEEL_					0	0	0			REV__ENSG00000164023|ENST00000690982|SGMS2	REV__ENSG00000164023|ENST00000690982|SGMS2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	554.767103	1107.51965	0.60863	0.00033765	-1.6758	-0.00092967	-1.0671	-0.00059202	554.766297840537	73.078	0.93876	70.678	70.22	71.158	-2.3999	0.0098921	-0.00090575	NaN	32.812	46	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36847	+		43731	20922	36154	36177							-0.02980643149999196
PQNELHEEL	9	Unmodified	_PQNELHEEL_					0	0	0			REV__ENSG00000164023|ENST00000690982|SGMS2	REV__ENSG00000164023|ENST00000690982|SGMS2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	554.767103	1107.51965	-0.4287	-0.00023783	-0.0059898	-3.323E-06	-0.43469	-0.00024115	554.766867109088	72.976	0.64238	70.489	70.282	70.925	-2.4873	-0.17941	0.00094694	NaN	32.812	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24981	+		43732	20922	36154	36177							-0.02980643149999196
PQNIIDGRLPE	11	Unmodified	_PQNIIDGRLPE_					0	0	0		nc|ENSG00000169760|Q8N2Q7|NLGN1;nc|ENSG00000169760|Q8N2Q7-2|NLGN1;ENSG00000169760|ENST00000695368|NLGN1	nc|ENSG00000169760|Q8N2Q7|NLGN1	nc|ENSG00000169760|Q8N2Q7|NLGN1	MULTI-MSMS	OvCa9_classI_Rep3	3	626.3394775390625	2	626.338227	1250.6619	2.0915	0.00131	-1.78	-0.0011149	0.31155	0.00019513	626.337004210225	123.71	1.9187	122.67	121.68	123.6	-1.0377					71	36	4	0	0	0	0.56391	1	9576	9576		47.96	7.1814	1	298190			43733	15175	36155	36178	47176	47176					0.04659569592195112
PQNLFGKVL	9	Unmodified	_PQNLFGKVL_					0	0	0			REV__ENSG00000253958|ENST00000519106|CLDN23	REV__ENSG00000253958|ENST00000519106|CLDN23	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.7709045410156	2	508.300384	1014.58622	-0.31506	-0.00016014	0.68437	0.00034786	0.36931	0.00018772	508.8029210014583	53.971	0.23912	53.971	53.891	54.13	0					8	5	2	0	0	0	0.027462	1	4331	4331		21.96	0	1	83374	+		43734	23512	36156	36179	47177	47177					0.07950637202554844
PQPDVFPLF	9	Unmodified	_PQPDVFPLF_					0	0	0		ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	MULTI-MSMS	OvCa99_classI_Rep5	1	530.2799072265625	2	530.279118	1058.54368	1.006	0.00053344	0.61558	0.00032643	1.6215	0.00085987	530.2793603160508	156.46	2.3789	156.46	155.99	158.37	0					109	47	5	0	0	0	0.21231	1	18331	18331		74.255	0.28031	1	1799000			43735	9574	36157	36180	47178	47178					0.016752420743159746
PQPGFFNSTSS	11	Unmodified	_PQPGFFNSTSS_					0	0	0		nc|ENSG00000143552|Q5VU65-2|NUP210L;ENSG00000143552|ENST00000368559|NUP210L	nc|ENSG00000143552|Q5VU65-2|NUP210L	nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-MSMS	OvCa99_classI_Rep5	1	584.766845703125	2	584.767103	1167.51965	-0.46609	-0.00027255	-0.037677	-2.2032E-05	-0.50376	-0.00029458	584.7669514130754	41.081	0.71207	41.081	40.881	41.594	0					33	15	3	0	0	0	0.34051	1	2533	2533		65.465	1.9315	1	916270			43736	5070	36158	36181	47179	47179					-0.057406431500112376
PQPGPPGGPAN	11	Unmodified	_PQPGPPGGPAN_					0	0	0			REV__ENSG00000179862|ENST00000372638|CITED4	REV__ENSG00000179862|ENST00000372638|CITED4	MULTI-SECPEP	OvCa9_classI_Rep2	2	494.8040466308594	2	494.745973	987.477394	0.53569	0.00026503	-2.8379	-0.001404	-2.3022	-0.001139	494.7455280863326	64.781	2.4071	62.056	61.181	63.588	-2.7245					59	46	2	0	0	0	0.02557	1	4998	4998		31.53	13.205	1	78147	+		43737	22142	36159	36182	47180	47180					-0.016845737677158468
PQPKPKPQV	9	Unmodified	_PQPKPKPQV_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-MSMS	OvCa9_classI_Rep3	3	509.8032531738281	2	509.805834	1017.59712	-6.2934	-0.0032084	2.3889	0.0012179	-3.9045	-0.0019905	509.80678568012956	157.1	0.86105	155.93	155.45	156.31	-1.1707					26	16	2	0	0	0	0.67509	1	13549	13549		23.042	0	1	41601			43738	5894	36160	36183	47181	47181					0.08902039576844345
PQPLHPKYR	9	Unmodified	_PQPLHPKYR_					0	0	0			REV__ENST00000598178.1_1_19:41129590-41129683:+|nuORF	REV__ENST00000598178.1_1_19:41129590-41129683:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	569.3051147460938	2	568.322183	1134.62981	-0.53396	-0.00030346	-3.0527	-0.0017349	-3.5867	-0.0020384	568.3203197807329	43.044	0.78809	40.036	39.853	40.641	-3.0074					19	14	2	0	0	0	0.027462	1	2103	2103		23.042	0	1	30340	+		43739	28007	36161	36184	47182	47182					0.06788246699670708
PQPPLSSLA	9	Unmodified	_PQPPLSSLA_					0	0	0		ENST00000485324.1_1_X:152958408-152959565:+|nuORF	ENST00000485324.1_1_X:152958408-152959565:+|nuORF	ENST00000485324.1_1_X:152958408-152959565:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	455.28009033203125	2	455.255643	908.496732	0.92499	0.00042111	-1.1528	-0.00052482	-0.22781	-0.00010371	455.2549997265141	89.904	0.59959	87.329	87.05	87.65	-2.575					21	11	3	0	0	0	0.027462	1	7700	7700		37.159	15.199	1	24323			43740	12611	36162	36185	47183	47183					0.038823825231816045
PQPPLSSLA	9	Unmodified	_PQPPLSSLA_					0	0	0		ENST00000485324.1_1_X:152958408-152959565:+|nuORF	ENST00000485324.1_1_X:152958408-152959565:+|nuORF	ENST00000485324.1_1_X:152958408-152959565:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	455.255643	908.496732	3.0977	0.0014103	-3.4368	-0.0015646	-0.33905	-0.00015436	455.2538630524039	88.855	0.78828	87.488	87.183	87.971	-1.3676	0.079462	-0.00092191	NaN	29.15	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13329			43741	12611	36162	36185							0.038823825231816045
PQPPPPPEDPK	11	Unmodified	_PQPPPPPEDPK_					0	0	0			REV__nc|ENSG00000186642|O00408-5|PDE2A	REV__nc|ENSG00000186642|O00408-5|PDE2A	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.57684326171875	3	400.208273	1197.60299	0.74655	0.00029878	-0.59266	-0.00023719	0.15389	6.1587E-05	400.5431439788261	25.967	0.29868	25.967	25.743	26.042	0					7	5	2	0	0	0	0.025772	1	616	616		26.75	5.9126	1	12583	+		43742	22605	36163	36186	47184	47184					0.012090932978253477
PQPRRRGR	8	Unmodified	_PQPRRRGR_					0	0	0		nc|ENSG00000146463|Q5VZL5-3|ZMYM4;ZMYM4|p.K1431Nfs*9|1|0.11|ENSG00000146463|chr1:35415698-35415698|G/-|frameshift_variant;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	MULTI-MSMS	OvCa9_classI_Rep2	2	511.8089904785156	2	511.807565	1021.60058	-1.8602	-0.00095206	4.3935	0.0022486	2.5333	0.0012966	511.8096472275158	37.824	1.1833	35.115	34.83	36.013	-2.7097					51	23	4	0	0	0	0.73938	1	1738	1738		31.955	4.0726	1	203000			43743	5295	36164	36187	47185	47185					0.09064147194089855
PQPTGGPSPET	11	Unmodified	_PQPTGGPSPET_					0	0	0			REV__ENSG00000099385|ENST00000215115|BCL7C	REV__ENSG00000099385|ENST00000215115|BCL7C	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.2538452148438	2	534.253828	1066.4931	-0.35945	-0.00019204	1.4876	0.00079478	1.1282	0.00060274	534.2544609110615	31.29	1.4195	28.759	28.314	29.734	-2.5308					100	53	3	0	0	0	0.72064	1	681	681		22.58	2.0978	1	47830	+		43744	17326	36165	36188	47186	47186					-0.0374833204132301
PQQQPQPLSQ	10	Unmodified	_PQQQPQPLSQ_					0	0	0			REV__nc|ENSG00000109756|Q9Y4G8|RAPGEF2	REV__nc|ENSG00000109756|Q9Y4G8|RAPGEF2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.8516845703125	2	575.796195	1149.57784	-0.71529	-0.00041186	0.69208	0.0003985	-0.023209	-1.3364E-05	576.2969152790364	89.207	0.33946	86.605	86.385	86.725	-2.6027					9	6	2	0	0	0	0.027056	1	7644	7644		9.7057	0	1	27592	+		43745	17946	36166	36189	47187	47187					0.009030384952893655
PQQRAPLVEL	10	Unmodified	_PQQRAPLVEL_					0	0	0		ENST00000330843.8_1_8:37728035-37728973:-|nuORF	ENST00000330843.8_1_8:37728035-37728973:-|nuORF	ENST00000330843.8_1_8:37728035-37728973:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.8516845703125	2	575.83258	1149.65061	-0.94397	-0.00054357	-1.4633	-0.00084262	-2.4073	-0.0013862	575.8329552005547	89.158	0.49238	86.555	86.136	86.628	-2.6027					19	9	3	0	0	0	0.027088	1	7644	7644		14.137	0	1	84062			43746	10438	36167	36190	47188	47188					0.08176792288713841
PQQVVQKK	8	Unmodified	_PQQVVQKK_					0	0	0		chr12:65838569-65951383|402|96.85|0.92|6.72|+|0|HMGA2,HMGA2|1;ENSG00000149948|ENST00000403681|HMGA2	chr12:65838569-65951383|402|96.85|0.92|6.72|+|0|HMGA2,HMGA2|1	chr12:65838569-65951383|402|96.85|0.92|6.72|+|0|HMGA2,HMGA2|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.80816650390625	2	477.790184	953.565815	-2.4184	-0.0011555	1.8619	0.00088961	-0.55645	-0.00026587	477.7908161355189	37.34	0.59047	34.63	34.436	35.026	-2.7097					17	11	2	0	0	0	0.028476	1	1685	1685		38.806	5.2906	1	14892			43747	328	36168	36191	47189	47189					0.08717466542759666
PQRALLGLW	9	Unmodified	_PQRALLGLW_					0	0	0		ENST00000482723.1_1_17:72439553-72445018:+|nuORF	ENST00000482723.1_1_17:72439553-72445018:+|nuORF	ENST00000482723.1_1_17:72439553-72445018:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	527.3110961914062	2	527.313826	1052.6131	-1.7213	-0.00090768	-2.2156	-0.0011683	-3.937	-0.002076	527.3124779288797	34.111	0.84072	31.401	31.168	32.009	-2.7097					39	16	4	0	0	0	0.59983	1	1285	1285		31.955	3.7006	1	96446			43748	12576	36169	36192	47190	47190					0.08889745813735317
PQREKWSSKI	10	Unmodified	_PQREKWSSKI_					0	0	0		ENSG00000131389|ENST00000622186|SLC6A6;nc|ENSG00000131389|P31641-2|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	MULTI-MSMS	OvCa9_classI_Rep2	2	420.2345886230469	3	420.234933	1257.68297	1.4258	0.00059916	-1.6693	-0.00070152	-0.24357	-0.00010236	420.23426080527724	91.222	3.0164	89.987	89.439	92.456	-1.2355					163	57	5	0	0	0	0.58667	1	8111	8111		43.651	0	1	1547900			43749	4062	36170	36193	47191	47191					0.06443579691699597
PQRHMRPN	8	Unmodified	_PQRHMRPN_					0	0	0		ENSG00000204713|ENST00000377199|TRIM27;nc|ENSG00000204713|P14373-2|TRIM27;ENST00000481474.5_1_6:28876558-28891553:-|nuORF;TRIM27|p.Y342Tfs*34|1|0.47|ENSG00000204713|chr6:28904588-28904588|A/-|frameshift_variant	ENSG00000204713|ENST00000377199|TRIM27	ENSG00000204713|ENST00000377199|TRIM27	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.2840576171875	2	518.266884	1034.51922	1.4257	0.00073888	4.1823	0.0021675	5.6079	0.0029064	518.2689845859586	135.99	0.61145	135.99	135.73	136.35	0					19	12	2	0	0	0	0.028476	1	15867	15867		33.516	0	1	116340			43750	9026	36171	36194	47192	47192					0.003337034398327887
PQRLPLLPE	9	Unmodified	_PQRLPLLPE_					0	0	0		nc|ENSG00000152782|Q8TE04|PANK1;ENSG00000152782|ENST00000307534|PANK1	nc|ENSG00000152782|Q8TE04|PANK1	nc|ENSG00000152782|Q8TE04|PANK1	MSMS	OvCa9_classI_Rep4_	4	531.8158569335938	2	531.818941	1061.62333	NaN	NaN	NaN	NaN	NaN	NaN	NaN	160.03	1	158.42	157.92	158.92	-1.6101								0	0	0	0.18309	1	15801	15801		30.504	2.6214	1				43751	15101	36172	36195	47193	47193					0.09498308748334239
PQRPKVLEL	9	Unmodified	_PQRPKVLEL_					0	0	0		ENST00000510625.1_1_3:134255984-134293730:+|nuORF;nc|ENSG00000182923|Q96MT8-4|CEP63	ENST00000510625.1_1_3:134255984-134293730:+|nuORF	ENST00000510625.1_1_3:134255984-134293730:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.3151245117188	2	540.332216	1078.64988	-0.21015	-0.00011355	-0.65385	-0.0003533	-0.864	-0.00046685	540.8334917702149	87.432	1.5293	85.255	84.33	85.86	-2.1768					38	29	2	0	0	0	0.027343	1	5304	5304		68.787	7.8149	1	20221			43752	12974	36173	36196	47194	47194					0.11369997639667417
PQRRENQLRCP	11	Unmodified	_PQRRENQLRCP_					0	0	0		RAPGEF1|p.S31Qfs*11|1|0.04|ENSG00000107263|chr9:131650869-131650869|A/-|frameshift_variant	RAPGEF1|p.S31Qfs*11|1|0.04|ENSG00000107263|chr9:131650869-131650869|A/-|frameshift_variant	RAPGEF1|p.S31Qfs*11|1|0.04|ENSG00000107263|chr9:131650869-131650869|A/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	466.5392150878906	3	466.245726	1395.71535	-1.2907	-0.0006018	-1.4552	-0.00067848	-2.7459	-0.0012803	466.2464340343128	43.875	0.34372	43.875	43.694	44.038	0					13	7	3	0	0	0	0.025904	1	2926	2926		30.139	0	1	67622			43753	15541	36174	36197	47195	47195					0.0333204382304757
PQRVAWRM	8	Unmodified	_PQRVAWRM_					0	0	0			REV__nc|ENSG00000114812|P32241-3|VIPR1	REV__nc|ENSG00000114812|P32241-3|VIPR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.2562866210938	2	522.282003	1042.54945	-0.3995	-0.00020865	2.1097	0.0011018	1.7102	0.0008932	522.283058014649	32.82	0.73317	32.82	32.651	33.384	0					27	14	3	0	0	0	0.028476	1	1456	1456		18.324	0	1	474440	+		43754	28808	36175	36198	47196	47196					0.029880621050097034
PQSAPQQLQQ	10	Unmodified	_PQSAPQQLQQ_					0	0	0			REV__ENSG00000212916|ENST00000418460|MAP10	REV__ENSG00000212916|ENST00000418460|MAP10	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.831787109375	2	562.78837	1123.56219	0.89708	0.00050487	-3.3377	-0.0018784	-2.4406	-0.0013736	562.7855711270304	67.276	0.27222	67.276	67.136	67.408	0					9	6	2	0	0	0	0.026956	1	6298	6298		26.693	0	1	1005500	+		43755	23251	36176	36199	47197	47197					0.005347519782390009
PQSGGSQRMD	10	Unmodified	_PQSGGSQRMD_					0	0	0			REV__nc|ENSG00000184788|Q86VE3-2|SATL1	REV__nc|ENSG00000184788|Q86VE3-2|SATL1	MULTI-MSMS	OvCa9_classI_Rep3	3	531.7369995117188	2	531.73528	1061.45601	0.42225	0.00022453	3.8441	0.002044	4.2663	0.0022686	531.7372552159616	131.11	1.6243	129.98	129.46	131.09	-1.1249					58	32	2	0	0	0	0.77834	1	10457	10457		21.686	2.3258	1	92622	+		43756	22449	36177	36200	47198	47198					-0.07226326858722132
PQSHNRYFEE	10	Unmodified	_PQSHNRYFEE_					0	0	0			REV__ENST00000495510.1_1_13:36900679-36920374:-|nuORF	REV__ENST00000495510.1_1_13:36900679-36920374:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.21429443359375	3	436.198548	1305.57381	0.35766	0.00015601	-3.4807	-0.0015183	-3.1231	-0.0013623	436.1967541075897	39.297	0.29864	36.37	36.146	36.445	-2.9264					9	5	2	0	0	0	0.026757	1	1603	1603		39.873	18.187	1	8176	+		43757	19126	36178	36201	47199	47199					-0.06675050998433107
PQSKLAAVM	9	Unmodified	_PQSKLAAVM_					0	0	0			REV__ENSG00000166035|ENST00000299022|LIPC	REV__ENSG00000166035|ENST00000299022|LIPC	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.2747802734375	2	472.76532	943.516088	0.18174	8.5921E-05	1.9217	0.00090851	2.1034	0.00099443	472.7660063413074	31.242	0.23692	31.242	31.124	31.361	0					8	4	2	0	0	0	0.027462	1	1255	1255		23.042	0	1	30468	+		43758	21151	36179	36202	47200	47200					0.042070155424539735
PQSRVAKP	8	Unmodified	_PQSRVAKP_					0	0	0		ENST00000465443.5_1_1:45266117-45270174:+|nuORF;ENSG00000173846|ENST00000372201|PLK3	ENST00000465443.5_1_1:45266117-45270174:+|nuORF	ENST00000465443.5_1_1:45266117-45270174:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	442.2157287597656	2	441.761426	881.5083	0.47021	0.00020772	-0.18944	-8.3689E-05	0.28077	0.00012403	441.7612276097346	68.086	0.43041	68.086	67.803	68.233	0					18	10	2	0	0	0	0.028476	1	6368	6368		12.959	0	1	445600			43759	7420	36180	36203	47201	47201					0.06280624337182417
PQSTQVPYCLH	11	Unmodified	_PQSTQVPYCLH_					0	0	0			REV__ENSG00000120949|ENST00000263932|TNFRSF8	REV__ENSG00000120949|ENST00000263932|TNFRSF8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	424.890380859375	3	424.872895	1271.59686	-0.1242	-5.2768E-05	1.1559	0.00049112	1.0317	0.00043835	424.8733914569416	20.547	0.49509	19.209	19.005	19.5	-1.3386					18	9	3	0	0	0	0.025568	1	92	92		39.873	0	1	23602	+		43760	18524	36181	36204	47202	47202					-0.02807748205327698
PQTKHPSAVF	10	Unmodified	_PQTKHPSAVF_					0	0	0			REV__ENSG00000102547|ENST00000409308|CAB39L	REV__ENSG00000102547|ENST00000409308|CAB39L	MULTI-MSMS	OvCa99_classI_Rep5	1	556.2987060546875	2	556.298373	1110.58219	1.4001	0.0007789	-3.4904	-0.0019417	-2.0902	-0.0011628	556.2962468429479	150.2	1.8589	150.2	149.7	151.55	0					101	36	5	0	0	0	0.73378	1	17624	17624		26.693	4.733	1	1762000	+		43761	17562	36182	36205	47203	47203					0.031325477088330445
PQTMTRKNSID	11	Unmodified	_PQTMTRKNSID_					0	0	0			REV__nc|ENSG00000092978|Q9NW75-2|GPATCH2	REV__nc|ENSG00000092978|Q9NW75-2|GPATCH2	MULTI-MSMS	OvCa9_classI_Rep4_	4	430.8843688964844	3	430.887205	1289.63978	0.763	0.00032877	-3.4393	-0.001482	-2.6763	-0.0011532	430.8857606661418	22.115	1.8838	20.776	19.737	21.621	-1.3386					78	40	3	0	0	0	0.70315	1	254	254		28.577	1.5294	1	126830	+		43762	17273	36183	36206	47204	47204					0.006550218520942508
PQTNPRLII	9	Unmodified	_PQTNPRLII_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.276123046875	2	526.316566	1050.61858	0.83296	0.0004384	1.4574	0.00076706	2.2904	0.0012055	526.3169197568368	83.411	0.29379	83.411	83.335	83.629	0					9	6	2	0	0	0	0.027462	1	8701	8701		19.997	7.1851	1	148800	+		43763	21477	36184	36207	47205	47205					0.09529424605557324
PQTPSRSLA	9	Unmodified	_PQTPSRSLA_					0	0	0			REV__ENST00000249075.3_1_22:30637085-30637283:-|nuORF	REV__ENST00000249075.3_1_22:30637085-30637283:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.7738342285156	2	478.761623	955.508694	-0.40579	-0.00019428	0.15905	7.6146E-05	-0.24674	-0.00011813	478.76154442261736	55.836	2.3869	52.541	51.648	54.035	-3.2944					71	46	2	0	0	0	0.027279	1	3619	3619		82.305	13.518	1	186900	+		43764	23851	36185	36208	47206	47206					0.029159992663721823
PQVAKSGGSAR	11	Unmodified	_PQVAKSGGSAR_					0	0	0			REV__ENST00000593438.1_1_7:27155866-27156094:+|nuORF	REV__ENST00000593438.1_1_7:27155866-27156094:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.8480834960938	2	529.291079	1056.56761	-0.47861	-0.00025332	2.2105	0.00117	1.7318	0.00091665	529.292051851738	39.129	0.62685	39.129	38.836	39.463	0					23	13	3	0	0	0	0.025594	1	2309	2309		27.047	4.4677	1	68204	+		43765	27014	36186	36209	47207	47207					0.041584755607118495
PQVAKSGGSAR	11	Unmodified	_PQVAKSGGSAR_					0	0	0			REV__ENST00000593438.1_1_7:27155866-27156094:+|nuORF	REV__ENST00000593438.1_1_7:27155866-27156094:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	529.291079	1056.56761	0.35032	0.00018542	-0.11797	-6.2438E-05	0.23235	0.00012298	529.2905563821016	41.687	0.39371	38.978	38.832	39.226	-2.7097	-0.05958	-0.0016191	NaN	38.754	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9416	+		43766	27014	36186	36209							0.041584755607118495
PQVAKSGGSAR	11	Unmodified	_PQVAKSGGSAR_					0	0	0			REV__ENST00000593438.1_1_7:27155866-27156094:+|nuORF	REV__ENST00000593438.1_1_7:27155866-27156094:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	529.291079	1056.56761	-1.7505	-0.0009265	1.5657	0.00082873	-0.18473	-9.7776E-05	529.291865874317	41.986	0.66175	39.005	38.748	39.41	-2.9804	-0.031792	0.00016325	NaN	38.754	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31618	+		43767	27014	36186	36209							0.041584755607118495
PQVCEALLF	9	Unmodified	_PQVCEALLF_					0	0	0		ENSG00000085741|ENST00000322563|WNT11	ENSG00000085741|ENST00000322563|WNT11	ENSG00000085741|ENST00000322563|WNT11	MULTI-MSMS	OvCa9_classI_Rep2	2	510.26458740234375	2	510.265153	1018.51575	-1.3147	-0.00067086	0.77677	0.00039636	-0.53796	-0.0002745	510.2653595086978	140.54	0.8349	140.31	140.09	140.92	-0.22696					28	16	2	0	0	0	0.59259	1	14064	14064		32.812	2.3088	1	57255			43768	1738	36187	36210	47208	47208					0.007235958225805916
PQVFPEMPQ	9	Unmodified	_PQVFPEMPQ_					0	0	0		ENST00000550376.5_1_12:108154390-108154935:-|nuORF;ENST00000228437.9_1_12:108154390-108154785:-|nuORF;ENST00000547188.1_1_12:108154390-108154627:-|nuORF	ENST00000550376.5_1_12:108154390-108154935:-|nuORF	ENST00000550376.5_1_12:108154390-108154935:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.2964477539062	2	536.760235	1071.50592	-0.65615	-0.0003522	-1.7309	-0.00092909	-2.3871	-0.0012813	536.7583808186216	61.48	1.296	58.023	57.617	58.913	-3.4577					38	26	3	0	0	0	0.027462	1	4291	4291		25.574	8.2091	1	39761			43769	9711	36188	36211	47209	47209					-0.026975921827897764
PQVIHSIL	8	Unmodified	_PQVIHSIL_					0	0	0		ENST00000418303.1_1_7:43958366-43959461:+|nuORF	ENST00000418303.1_1_7:43958366-43959461:+|nuORF	ENST00000418303.1_1_7:43958366-43959461:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	453.77447509765625	2	453.774003	905.533452	-0.20968	-9.5149E-05	0.50433	0.00022885	0.29465	0.0001337	453.7739552266696	92.193	1.3662	89.651	89.262	90.628	-2.5425					72	26	4	0	0	0	0.65582	1	7992	7992		52.299	0	1	393790			43770	11635	36189	36212	47210	47210					0.07690679139773238
PQVRCEPPQ	9	Unmodified	_PQVRCEPPQ_					0	0	0			REV__ENST00000392537.6_1_3:184035142-184035223:+|nuORF	REV__ENST00000392537.6_1_3:184035142-184035223:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.7792358398438	2	527.260933	1052.50731	-1.4311	-0.00075455	-1.5405	-0.00081223	-2.9716	-0.0015668	527.762037412761	53.153	0.30244	49.945	49.795	50.097	-3.208					6	5	2	0	0	0	0.027462	1	3217	3217		19.104	0	1	13014	+		43771	25261	36190	36213	47211	47211					-0.01683958094031368
PQVSRILR	8	Unmodified	_PQVSRILR_					0	0	0		nc|ENSG00000187531|Q9NRC8-3|SIRT7	nc|ENSG00000187531|Q9NRC8-3|SIRT7	nc|ENSG00000187531|Q9NRC8-3|SIRT7	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.8046569824219	2	484.803626	967.592698	-0.033226	-1.6108E-05	0.12422	6.0224E-05	0.090998	4.4116E-05	484.803347940651	57.61	1.3127	54.265	53.934	55.247	-3.3449					47	25	2	0	0	0	0.64026	1	3752	3752		55.504	0	1	611980			43772	15225	36191	36214	47212	47212					0.10760575153949503
PQVSWSPEIT	10	Unmodified	_PQVSWSPEIT_					0	0	0		ENST00000325042.2_1_7:22765745-22766153:-|nuORF	ENST00000325042.2_1_7:22765745-22766153:-|nuORF	ENST00000325042.2_1_7:22765745-22766153:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	572.2853393554688	2	572.287671	1142.56079	-1.4852	-0.00084994	-1.4521	-0.00083101	-2.9373	-0.001681	572.2866735153697	32.713	1.6873	30.003	29.53	31.218	-2.7097					70	33	3	0	0	0	0.44431	1	1107	1107		62.107	7.3311	1	392360			43773	10400	36192	36215	47213	47213					-0.004788821105421448
PQVSYIDLDVL	11	Unmodified	_PQVSYIDLDVL_					0	0	0			REV__ENST00000571449.1_1_16:3183118-3184784:-|nuORF	REV__ENST00000571449.1_1_16:3183118-3184784:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	421.22540283203125	3	421.227333	1260.66017	0.71741	0.00030219	-3.0359	-0.0012788	-2.3185	-0.00097663	421.2260829491031	66.384	2.5241	63.688	63.319	65.843	-2.6958					143	50	5	0	0	0	0.63942	1	5164	5164		41.08	3.5719	1	1079000	+		43774	27743	36193	36216	47214	47214					0.0402651578356199
PQYAFLQYCD	10	Unmodified	_PQYAFLQYCD_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.K1327Rfs*8|1|0.05|ENSG00000065526|chr1:15930219-15930220|-/G|frameshift_variant;SPEN|p.L1328Vfs*10|1|0.05|ENSG00000065526|chr1:15930221-15930222|-/GTCCAATCAAAAAAGCC|frameshift_variant;SPEN|p.S920Wfs*24|1|0.06|ENSG00000065526|chr1:15928998-15928999|-/GGTCTCAAATTCCTGAC|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	624.86767578125	2	624.273706	1246.53286	0.15101	9.4269E-05	4.4104	0.0027533	4.5614	0.0028476	624.2765503742224	83.757	0.82297	81.094	80.681	81.504	-2.6629					27	16	2	0	0	0	0.026994	1	6947	6947		13.454	1.2474	1	65410			43775	1329	36194	36217	47215	47215					-0.08054528362254132
PQYHVLLL	8	Unmodified	_PQYHVLLL_					0	0	0			REV__ENSG00000173517|ENST00000682557|PEAK1	REV__ENSG00000173517|ENST00000682557|PEAK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.2691650390625	2	491.789653	981.564752	-0.77301	-0.00038016	-3.1974	-0.0015724	-3.9704	-0.0019526	491.78808286685216	45.33	0.98985	42.291	41.971	42.961	-3.0385					33	18	2	0	0	0	0.028476	1	2314	2314		37.028	17.669	1	68960	+		43776	21780	36195	36218	47216	47216					0.07323252173853234
PRAAELFHQL	10	Unmodified	_PRAAELFHQL_					0	0	0		ENSG00000104129|ENST00000220496|DNAJC17	ENSG00000104129|ENST00000220496|DNAJC17	ENSG00000104129|ENST00000220496|DNAJC17	MULTI-MSMS	OvCa9_classI_Rep4_	4	591.3226928710938	2	591.324922	1180.63529	-0.88609	-0.00052397	-2.9092	-0.0017203	-3.7953	-0.0022443	591.3232652193527	42.573	1.5079	39.593	39.312	40.82	-2.9804					98	28	5	0	0	0	0.35465	1	1976	1976		74.255	12.148	1	1476000			43777	2353	36196	36219	47217	47217					0.05219925491496724
PRAAKCRR	8	Unmodified	_PRAAKCRR_					0	0	0			REV__ENST00000415050.2_2_14:93651434-93651656:+|nuORF	REV__ENST00000415050.2_2_14:93651434-93651656:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	479.2774353027344	2	479.279795	956.545037	-1.3781	-0.00066051	-3.4915	-0.0016734	-4.8697	-0.0023339	479.2778548190663	50.558	1.983	47.764	47.232	49.215	-2.794					76	39	3	0	0	0	0.73938	1	3277	3277		31.955	0.42505	1	369850	+		43778	25527	36197	36220	47218	47218					0.06502597682094802
PRAAPLLALLH	11	Unmodified	_PRAAPLLALLH_					0	0	0		ENST00000454190.6_2_3:9956219-9957488:+|nuORF;nc|ENSG00000163701|Q8NFR9-2|IL17RE;ENSG00000163701|ENST00000383814|IL17RE	ENST00000454190.6_2_3:9956219-9957488:+|nuORF	ENST00000454190.6_2_3:9956219-9957488:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	586.3673095703125	2	586.369133	1170.72371	0.2284	0.00013393	-0.62054	-0.00036386	-0.39213	-0.00022994	586.368761284623	92.323	2.3778	91.155	90.866	93.244	-1.168					141	45	5	0	0	0	0.54764	1	8249	8249		49.442	7.0454	1	1452400			43779	6349	36198	36221	47219	47219					0.14517965801974242
PRAAQGRLLRP	11	Unmodified	_PRAAQGRLLRP_					0	0	0			REV__ENST00000334976.10_2_19:50992738-50993161:+|nuORF	REV__ENST00000334976.10_2_19:50992738-50993161:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	412.57080078125	3	412.254551	1233.74182	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.039	1	18.7	18.2	19.2	-1.3386								0	0	0	0.19474	1	5	5		23.378	0.79825	1		+		43780	24573	36199	36222	47220	47220					0.1343010077669078
PRACAFGWPGK	11	Unmodified	_PRACAFGWPGK_					0	0	0			REV__ENST00000406961.5_1_2:24991652-24991949:+|nuORF	REV__ENST00000406961.5_1_2:24991652-24991949:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	595.3024291992188	2	595.300393	1188.58623	0.61441	0.00036576	3.5769	0.0021293	4.1913	0.0024951	595.3024260115109	114.31	2.8947	114.31	113.66	116.55	0					190	62	5	0	0	0	0.69081	1	13005	13005		32.812	1.2826	1	10641000	+		43781	25447	36200	36223	47221	47221					-0.0005168606910501694
PRAEPGPTR	9	Unmodified	_PRAEPGPTR_					0	0	0		ENST00000393422.6_1_16:75262972-75263290:-|nuORF	ENST00000393422.6_1_16:75262972-75263290:-|nuORF	ENST00000393422.6_1_16:75262972-75263290:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	489.94793701171875	2	490.76724	979.519927	1.133	0.00055605	-1.6176	-0.00079387	-0.4846	-0.00023783	490.76635716566835	37.31	0.79928	34.417	34.192	34.991	-2.8925					22	15	2	0	0	0	0.027462	1	1340	1340		19.997	0.6368	1	55919			43782	11245	36201	36224	47222	47222					0.029348213605203455
PRAGTHVL	8	Unmodified	_PRAGTHVL_					0	0	0			REV__nc|ENSG00000130182|Q96SZ4-2|ZSCAN10	REV__nc|ENSG00000130182|Q96SZ4-2|ZSCAN10	MULTI-SECPEP	OvCa99_classI_Rep5	1	426.2713928222656	2	425.748319	849.482085	-0.41769	-0.00017783	0.43685	0.00018599	0.019159	8.157E-06	425.74838042129215	59.285	2.3164	59.285	58.973	61.289	0					103	57	2	0	0	0	0.028476	1	5309	5309		19.36	7.849	1	6133300	+		43783	18928	36202	36225	47223	47223					0.051323551656992095
PRAHPRAH	8	Unmodified	_PRAHPRAH_					0	0	0		ENST00000439622.1_1_X:57148101-57148341:+|nuORF	ENST00000439622.1_1_X:57148101-57148341:+|nuORF	ENST00000439622.1_1_X:57148101-57148341:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	471.2611999511719	2	471.262459	940.510366	0.74224	0.00034979	-2.1986	-0.0010361	-1.4563	-0.00068632	471.26127618416797	42.586	1.0873	39.876	39.621	40.708	-2.7097					50	21	3	0	0	0	0.73288	1	2315	2315		35.201	1.0282	1	212530			43784	11918	36203	36226	47224	47224					0.03773097865644104
PRAHSTVSL	9	Unmodified	_PRAHSTVSL_					0	0	0			REV__FAM171A1|p.G383A|1|0.44|ENSG00000148468|chr10:15214440-15214440|C/G|missense_variant	REV__FAM171A1|p.G383A|1|0.44|ENSG00000148468|chr10:15214440-15214440|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	484.2691345214844	2	484.269616	966.524678	-0.97487	-0.0004721	0.71113	0.00034438	-0.26374	-0.00012772	484.26987122252336	49.254	1.4869	46.494	45.779	47.266	-2.7603					73	29	3	0	0	0	0.38529	1	3115	3115		53.351	0	1	266680	+		43785	28126	36204	36227	47225	47225					0.04007705503283887
PRAINVVNRVT	11	Unmodified	_PRAINVVNRVT_					0	0	0			REV__ENST00000472135.2_1_X:83695455-83724556:-|nuORF	REV__ENST00000472135.2_1_X:83695455-83724556:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8685913085938	2	619.870028	1237.7255	-3.8587	-0.0023919	2.9348	0.0018192	-0.92393	-0.00057272	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.72497	1	15443	15443		16.007	0.36496	1	492670	+		43786	21074	36205	36228	47226	47226					0.11614974819917734
PRAIRLSKP	9	Unmodified	_PRAIRLSKP_					0	0	0			REV__nc|ENSG00000103197|P49815-4|TSC2	REV__nc|ENSG00000103197|P49815-4|TSC2	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.7772827148438	2	519.33255	1036.65055	0.19384	0.00010067	-3.6253	-0.0018827	-3.4314	-0.0017821	519.3299768713445	78.971	0.38538	76.631	76.417	76.802	-2.3399					14	7	3	0	0	0	0.027462	1	4227	4227		44.117	14.967	1	18841	+		43787	17603	36206	36229	47227	47227					0.13368837079337936
PRAMPIGAKV	10	Unmodified	_PRAMPIGAKV_					0	0	0		ENST00000464676.5_1_3:133669982-133717557:-|nuORF	ENST00000464676.5_1_3:133669982-133717557:-|nuORF	ENST00000464676.5_1_3:133669982-133717557:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	520.30517578125	2	520.307687	1038.60082	-4.8818	-0.0025401	0.14268	7.4237E-05	-4.7391	-0.0024658	520.3076056055337	152.59	1.7718	151.62	150.74	152.51	-0.97301					83	35	4	0	0	0	0.66721	1	13025	13025		34.173	0.65696	1	460690			43788	12259	36207	36230	47228	47228					0.08306386079061667
PRAPAKQLHT	10	Unmodified	_PRAPAKQLHT_					0	0	0			REV__ENAM|p.E968Afs*96|1|0.07|ENSG00000132464|chr4:70644328-70644329|-/CC|frameshift_variant	REV__ENAM|p.E968Afs*96|1|0.07|ENSG00000132464|chr4:70644328-70644329|-/CC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	559.82470703125	2	559.825089	1117.63563	-0.22671	-0.00012692	-0.48007	-0.00026875	-0.70677	-0.00039567	559.8248187280101	48.115	1.5889	45.405	44.935	46.524	-2.7097					74	31	4	0	0	0	0.39172	1	2961	2961		69.628	2.134	1	475870	+		43789	16354	36208	36231	47229	47229					0.08151345211354055
PRAPAKQLHT	10	Unmodified	_PRAPAKQLHT_					0	0	0			REV__ENAM|p.E968Afs*96|1|0.07|ENSG00000132464|chr4:70644328-70644329|-/CC|frameshift_variant	REV__ENAM|p.E968Afs*96|1|0.07|ENSG00000132464|chr4:70644328-70644329|-/CC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.826416015625	2	559.825089	1117.63563	0.24704	0.0001383	-1.0654	-0.00059641	-0.81832	-0.00045812	559.8245195702754	48.533	1.7084	45.425	44.988	46.697	-3.1077					91	32	5	0	0	0	0.1722	2	2683	2671;2683		98.629	5.4861	1	2308500	+		43790	16354	36208	36231	47230;47231	47231					0.08151345211354055
PRAPGLISL	9	Unmodified	_PRAPGLISL_					0	0	0			REV__ENST00000452463.5_1_7:137686396-137686669:-|nuORF	REV__ENST00000452463.5_1_7:137686396-137686669:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	462.2869567871094	2	462.287277	922.560001	-0.082447	-3.8114E-05	-0.18267	-8.4446E-05	-0.26512	-0.00012256	462.2870685327716	97.397	1.6223	96.438	95.97	97.592	-0.95856					88	32	4	0	0	0	0.12365	3	8818	8808;8818;8833		90.777	3.0224	1	674170	+		43791	25983	36209	36232	47232;47233;47234	47233					0.09562368031083679
PRAPGLISL	9	Unmodified	_PRAPGLISL_					0	0	0			REV__ENST00000452463.5_1_7:137686396-137686669:-|nuORF	REV__ENST00000452463.5_1_7:137686396-137686669:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	462.2877197265625	2	462.287277	922.560001	-0.38212	-0.00017665	-0.037227	-1.7209E-05	-0.41934	-0.00019386	462.2871601553284	98.31	1.4913	96.55	96.11	97.601	-1.7595					81	28	4	0	0	0	0.091859	3	6557	6553;6557;6563		99.375	14.003	1	860650	+		43792	25983	36209	36232	47235;47236;47237	47236					0.09562368031083679
PRAPGLISL	9	Unmodified	_PRAPGLISL_					0	0	0			REV__ENST00000452463.5_1_7:137686396-137686669:-|nuORF	REV__ENST00000452463.5_1_7:137686396-137686669:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.2882080078125	2	462.287277	922.560001	-0.84311	-0.00038976	0.56502	0.0002612	-0.27809	-0.00012856	462.28743237203275	98.935	1.4389	96.61	96.228	97.667	-2.3253					81	27	4	0	0	0	0.091859	2	8810	8810;8836		99.375	3.1845	1	777210	+		43793	25983	36209	36232	47238;47239	47238					0.09562368031083679
PRAPPSPGGL	10	Unmodified	_PRAPPSPGGL_					0	0	0		ENST00000479818.5_1_22:50713453-50713714:-|nuORF	ENST00000479818.5_1_22:50713453-50713714:-|nuORF	ENST00000479818.5_1_22:50713453-50713714:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.7749938964844	2	474.766709	947.518865	0.93073	0.00044188	-2.815	-0.0013365	-1.8843	-0.00089459	474.7652610427219	152.76	1.3792	152.76	152.45	153.83	0					60	31	4	0	0	0	0.026752	1	17992	17992		35.618	0	1	174990			43794	12510	36210	36233	47240	47240					0.04300606991614586
PRAPRFAPL	9	Unmodified	_PRAPRFAPL_					0	0	0		ENST00000434423.4_1_7:72395856-72396045:+|nuORF	ENST00000434423.4_1_7:72395856-72396045:+|nuORF	ENST00000434423.4_1_7:72395856-72396045:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.3202514648438	2	512.806168	1023.59778	-1.0987	-0.00056344	-0.42748	-0.00021922	-1.5262	-0.00078265	512.8056418610996	54.643	0.51208	51.396	51.132	51.644	-3.2474					12	9	2	0	0	0	0.027462	1	3410	3410		40.573	10.069	1	18209			43795	11842	36211	36234	47241	47241					0.08692879016552979
PRAPVSPARPA	11	Unmodified	_PRAPVSPARPA_					0	0	0			REV__ENSG00000148848|ENST00000448723|ADAM12	REV__ENSG00000148848|ENST00000448723|ADAM12	MULTI-MSMS	OvCa9_classI_Rep2	2	559.8253173828125	2	559.825089	1117.63563	-0.22671	-0.00012692	-0.48007	-0.00026875	-0.70677	-0.00039567	559.8248187280101	48.115	1.5889	45.405	44.935	46.524	-2.7097					74	31	4	0	0	0	0.31264	2	2979	2967;2979		67.494	12.771	1	475870	+		43796	20134	36212	36235	47242;47243	47243					0.08151345211376793
PRAQSALYNF	10	Unmodified	_PRAQSALYNF_					0	0	0			REV__tr|A0A553SI75|A0A553SI75_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_14220PE=4SV=1	REV__tr|A0A553SI75|A0A553SI75_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_14220PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	583.80419921875	2	583.80128	1165.58801	0.97841	0.0005712	1.9394	0.0011322	2.9178	0.0017034	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.81289	1	1497	1497		17.365	2.5001	1	155970	+		43797	29867	36213	36236	47244	47244					0.011836462205110365
PRARPDEL	8	Unmodified	_PRARPDEL_					0	0	0			REV__nc|ENSG00000205744|Q8IV53-2|DENND1C	REV__nc|ENSG00000205744|Q8IV53-2|DENND1C	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.2735595703125	2	477.261791	952.509028	-0.52801	-0.000252	-3.5019	-0.0016713	-4.0299	-0.0019233	477.26012081018973	77.349	2.1486	75.559	74.998	77.147	-1.7894					62	41	2	0	0	0	0.028476	1	6504	6504		45.972	0	1	57139	+		43798	23227	36214	36237	47245	47245					0.030874189862174717
PRARVSLLR	9	Unmodified	_PRARVSLLR_					0	0	0		ENST00000536017.1_1_11:64053809-64053992:+|nuORF	ENST00000536017.1_1_11:64053809-64053992:+|nuORF	ENST00000536017.1_1_11:64053809-64053992:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	534.34326171875	2	534.343449	1066.67235	1.9733	0.0010544	-1.9799	-0.0010579	-0.0065619	-3.5063E-06	534.3423036869325	64.763	1.4145	61.77	61.395	62.809	-2.9933					70	27	3	0	0	0	0.66262	1	2544	2544		24.519	7.1542	1	193540			43799	13386	36215	36238	47246	47246					0.1416764182793031
PRASGKAQPQ	10	Unmodified	_PRASGKAQPQ_					0	0	0		nc|ENSG00000169258|Q7Z2K8-2|GPRIN1;ENSG00000169258|ENST00000303991|GPRIN1	nc|ENSG00000169258|Q7Z2K8-2|GPRIN1	nc|ENSG00000169258|Q7Z2K8-2|GPRIN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.2869873046875	2	520.285797	1038.55704	-1.3123	-0.00068278	1.3391	0.00069671	0.02676	1.3923E-05	520.2863599856137	42.316	0.60667	39.336	39.064	39.67	-2.9804					27	11	3	0	0	0	0.5675	1	1965	1965		45.972	7.1661	1	345460			43800	15171	36216	36239	47247	47247					0.03930492906260952
PRASGKAQPQ	10	Unmodified	_PRASGKAQPQ_					0	0	0		nc|ENSG00000169258|Q7Z2K8-2|GPRIN1;ENSG00000169258|ENST00000303991|GPRIN1	nc|ENSG00000169258|Q7Z2K8-2|GPRIN1	nc|ENSG00000169258|Q7Z2K8-2|GPRIN1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	520.285797	1038.55704	-1.0834	-0.0005637	1.9855	0.0010331	0.9021	0.00046935	520.2868057553068	39.552	0.2095	39.552	39.42	39.63	0	0.1272	0.0018224	NaN	45.972	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75404			43801	15171	36216	36239							0.03930492906260952
PRASGKAQPQ	10	Unmodified	_PRASGKAQPQ_					0	0	0		nc|ENSG00000169258|Q7Z2K8-2|GPRIN1;ENSG00000169258|ENST00000303991|GPRIN1	nc|ENSG00000169258|Q7Z2K8-2|GPRIN1	nc|ENSG00000169258|Q7Z2K8-2|GPRIN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	520.285797	1038.55704	1.2779	0.00066488	-1.442	-0.00075024	-0.16407	-8.5365E-05	520.2848941424933	42.096	0.6907	39.386	39.029	39.72	-2.7097	-0.038522	-0.0017442	NaN	45.972	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61569			43802	15171	36216	36239							0.03930492906260952
PRASHPVAR	9	Unmodified	_PRASHPVAR_					0	0	0			REV__ENST00000607882.5_1_7:66205530-66205641:+|nuORF	REV__ENST00000607882.5_1_7:66205530-66205641:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	495.7824401855469	2	495.783225	989.551896	0.42465	0.00021054	-4.4318	-0.0021972	-4.0072	-0.0019867	495.78083557519824	44.24	1.6407	41.53	40.906	42.547	-2.7097					89	32	4	0	0	0	0.50149	1	2527	2527		42.396	5.237	1	198360	+		43803	28092	36217	36240	47248	47248					0.05670233834314331
PRASHVPSR	9	Unmodified	_PRASHVPSR_					0	0	0		ENSG00000164694|ENST00000297267|FNDC1;nc|ENSG00000164694|Q4ZHG4-2|FNDC1	ENSG00000164694|ENST00000297267|FNDC1	ENSG00000164694|ENST00000297267|FNDC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.7779846191406	2	503.780682	1005.54681	-0.53642	-0.00027024	-3.2273	-0.0016259	-3.7637	-0.0018961	503.7788775374196	22.106	2.3664	20.768	19.646	22.013	-1.3386					123	57	3	0	0	0	0.61365	1	313	313		30.318	4.8675	1	168480			43804	6478	36218	36241	47249	47249					0.044259299717055
PRASKVKS	8	Unmodified	_PRASKVKS_					0	0	0			REV__ZNF608|p.L732V|1|0.23|ENSG00000168916|chr5:124648190-124648190|G/C|missense_variant	REV__ZNF608|p.L732V|1|0.23|ENSG00000168916|chr5:124648190-124648190|G/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	435.8737487792969	2	436.769252	871.52395	0.6776	0.00029596	4.1223	0.0018005	4.7999	0.0020965	436.7709487522301	110.07	0.98971	109.9	109.46	110.45	-0.17237					28	19	2	0	0	0	0.028476	1	10410	10410		37.812	11.119	1	20699	+		43805	32777	36219	36242	47250	47250					0.08304910854235459
PRCLCEAPK	9	Unmodified	_PRCLCEAPK_					0	0	0			REV__ENSG00000128917|ENST00000249749|DLL4	REV__ENSG00000128917|ENST00000249749|DLL4	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.8136291503906	2	508.75443	1015.49431	-0.68287	-0.00034741	4.1576	0.0021152	3.4748	0.0017678	508.75662245740693	74.594	0.44545	72.184	71.994	72.439	-2.4106					14	8	2	0	0	0	0.027295	1	3744	3744		74.255	10.048	1	35571	+		43806	18878	36220	36243	47251	47251					-0.012821124777815385
PRCLCEAPK	9	Unmodified	_PRCLCEAPK_					0	0	0			REV__ENSG00000128917|ENST00000249749|DLL4	REV__ENSG00000128917|ENST00000249749|DLL4	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	508.75443	1015.49431	0.41575	0.00021151	-1.6229	-0.00082566	-1.2072	-0.00061415	508.75357635192	71.978	0.45834	71.978	71.749	72.208	0	-0.10292	-0.0023645	NaN	74.255	25	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1500000	+		43807	18878	36220	36243							-0.012821124777815385
PRCLLLRLAVE	11	Unmodified	_PRCLLLRLAVE_					0	0	0			REV__ENSG00000189227|ENST00000342683|C15orf61	REV__ENSG00000189227|ENST00000342683|C15orf61	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8821411132812	2	641.886832	1281.75911	-4.6434	-0.0029805	-1.9733	-0.0012666	-6.6167	-0.0042472	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.72526	1	15723	15723		12.207	0.69566	1	543390	+		43808	22769	36221	36244	47252	47252					0.12950260267484737
PRCLPQRR	8	Unmodified	_PRCLPQRR_					0	0	0		ENST00000444527.2_1_8:56367247-56367565:-|nuORF	ENST00000444527.2_1_8:56367247-56367565:-|nuORF	ENST00000444527.2_1_8:56367247-56367565:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.8145141601562	2	513.292902	1024.57125	-0.45916	-0.00023568	0.035957	1.8457E-05	-0.4232	-0.00021723	513.7959986293024	74.716	0.51651	72.745	72.534	73.05	-1.9711					12	9	2	0	0	0	0.028476	1	6160	6160		40.573	1.7665	1	21274			43809	11958	36222	36245	47253	47253					0.05994866853575331
PRCSCPVHLVL	11	Unmodified	_PRCSCPVHLVL_					0	0	0		ENSG00000162337|ENST00000294304|LRP5;ENST00000529993.5_1_11:68171724-68216535:+|nuORF	ENSG00000162337|ENST00000294304|LRP5	ENSG00000162337|ENST00000294304|LRP5	MULTI-MSMS	OvCa99_classI_Rep5	1	612.327392578125	2	612.323011	1222.63147	1.0383	0.00063577	2.9658	0.001816	4.0041	0.0024518	612.3246266396042	151.24	1.0931	151.24	150.69	151.79	0					63	21	5	0	0	0	0.50928	1	17719	17719		52.937	3.4007	1	563350			43810	6169	36223	36246	47254	47254					0.029057964017738414
PRCVAVAQ	8	Unmodified	_PRCVAVAQ_					0	0	0		ENST00000376592.5_2_1:11848712-11848931:-|nuORF	ENST00000376592.5_2_1:11848712-11848931:-|nuORF	ENST00000376592.5_2_1:11848712-11848931:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	422.7433166503906	2	422.228905	842.443257	-1.2795	-0.00054025	2.9192	0.0012326	1.6397	0.00069231	422.2302318499454	45.712	0.8859	42.673	42.178	43.064	-3.0385					20	16	2	0	0	0	0.028476	1	2345	2345		33.516	6.7195	1	24732			43811	11074	36224	36247	47255	47255					0.015733065396716484
PRDEKKKK	8	Unmodified	_PRDEKKKK_					0	0	0			REV__nc|ENSG00000056487|Q96EK2-4|PHF21B	REV__nc|ENSG00000056487|Q96EK2-4|PHF21B	MULTI-MSMS	OvCa9_classI_Rep2	2	514.814208984375	2	514.81419	1027.61383	2.5746	0.0013254	-2.6896	-0.0013847	-0.11509	-5.9251E-05	514.8126670332618	27.295	1.0989	24.585	24.394	25.493	-2.7097					55	24	4	0	0	0	0.73494	1	476	476		34.173	1.3601	1	264850	+		43812	16716	36225	36248	47256	47256					0.1011254046279646
PRDFVDLVL	9	Unmodified	_PRDFVDLVL_					0	0	0		ENST00000560723.5_1_15:81605599-81615081:-|nuORF;ENSG00000172345|ENST00000302824|STARD5	ENST00000560723.5_1_15:81605599-81615081:-|nuORF	ENST00000560723.5_1_15:81605599-81615081:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	537.302734375	2	537.303124	1072.5917	-2.0429	-0.0010977	-0.98449	-0.00052897	-3.0274	-0.0016266	537.3025976508426	51.263	1.5868	48.45	48.104	49.691	-2.8129					81	31	4	0	0	0	0.50149	1	3355	3355		42.396	6.7778	1	305260			43813	13740	36226	36249	47257	47257					0.058303159943761784
PRDKAKKIS	9	Unmodified	_PRDKAKKIS_					0	0	0			REV__tr|A0A553SHG3|A0A553SHG3_NIACIRNA-bindingproteinS1OS=NialliacirculansOX=1397GN=CEQ21_12830PE=4SV=1	REV__tr|A0A553SHG3|A0A553SHG3_NIACIRNA-bindingproteinS1OS=NialliacirculansOX=1397GN=CEQ21_12830PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.79541015625	2	521.822015	1041.62948	-0.30243	-0.00015782	3.9461	0.0020592	3.6437	0.0019014	522.3249515234194	78.434	0.23827	75.617	75.457	75.696	-2.8165					6	4	2	0	0	0	0.027447	1	6311	6311		39.253	7.298	1	16983	+		43814	29800	36227	36250	47258	47258					0.11032826979840138
PRDKAKKIS	9	Unmodified	_PRDKAKKIS_					0	0	0			REV__tr|A0A553SHG3|A0A553SHG3_NIACIRNA-bindingproteinS1OS=NialliacirculansOX=1397GN=CEQ21_12830PE=4SV=1	REV__tr|A0A553SHG3|A0A553SHG3_NIACIRNA-bindingproteinS1OS=NialliacirculansOX=1397GN=CEQ21_12830PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.822015	1041.62948	0.047196	2.4628E-05	-6.7118	-0.0035024	-6.6646	-0.0034777	522.3193300320972	77.805	0.78441	76.016	75.519	76.304	-1.7894	0.29444	-0.0053968	NaN	39.253	27	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16688	+		43815	29800	36227	36250							0.11032826979840138
PRDKAKKIS	9	Unmodified	_PRDKAKKIS_					0	0	0			REV__tr|A0A553SHG3|A0A553SHG3_NIACIRNA-bindingproteinS1OS=NialliacirculansOX=1397GN=CEQ21_12830PE=4SV=1	REV__tr|A0A553SHG3|A0A553SHG3_NIACIRNA-bindingproteinS1OS=NialliacirculansOX=1397GN=CEQ21_12830PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	521.822015	1041.62948	-0.63543	-0.00033158	-7.7987	-0.0040695	-8.4341	-0.0044011	522.3181870929576	77.974	0.74486	75.621	75.353	76.098	-2.3527	-0.10037	-0.0065311	NaN	39.253	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31569	+		43816	29800	36227	36250							0.11032826979840138
PRDLADLAAY	10	Unmodified	_PRDLADLAAY_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5;ENST00000370691.6_1_20:60889559-60889904:-|nuORF	ENSG00000130702|ENST00000252999|LAMA5	ENSG00000130702|ENST00000252999|LAMA5	MULTI-MSMS	OvCa9_classI_Rep2	2	552.7860107421875	2	552.787838	1103.56112	1.7554	0.00097038	-4.2643	-0.0023572	-2.5088	-0.0013869	552.7854142273841	29.865	0.63211	27.155	26.975	27.607	-2.7097					29	12	3	0	0	0	0.762	1	787	787		23.523	1.5628	1	49044			43817	4000	36228	36251	47259	47259					0.013485376093285595
PRDLCGRIL	9	Unmodified	_PRDLCGRIL_					0	0	0		nc|ENSG00000172890|Q6IA69-2|NADSYN1;ENSG00000172890|ENST00000319023|NADSYN1;ENST00000531236.1_1_11:71192815-71195619:+|nuORF	nc|ENSG00000172890|Q6IA69-2|NADSYN1;ENST00000531236.1_1_11:71192815-71195619:+|nuORF	nc|ENSG00000172890|Q6IA69-2|NADSYN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.7947998046875	2	521.794943	1041.57533	-0.36391	-0.00018989	0.95707	0.00049939	0.59315	0.0003095	521.7948031991656	78.268	1.4789	75.451	75.018	76.497	-2.8165					79	30	4	0	0	0	0.27001	1	6293	6293		66.429	3.123	1	539800			43818	7326;13303	36229	36252	47260	47260					0.0562091155663893
PRDLCGRIL	9	Unmodified	_PRDLCGRIL_					0	0	0		nc|ENSG00000172890|Q6IA69-2|NADSYN1;ENSG00000172890|ENST00000319023|NADSYN1;ENST00000531236.1_1_11:71192815-71195619:+|nuORF	nc|ENSG00000172890|Q6IA69-2|NADSYN1;ENST00000531236.1_1_11:71192815-71195619:+|nuORF	nc|ENSG00000172890|Q6IA69-2|NADSYN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.794943	1041.57533	-0.12667	-6.6097E-05	0.42072	0.00021953	0.29405	0.00015343	521.7947207794974	77.145	1.6715	75.355	74.894	76.566	-1.7894	0.023846	-0.00067926	NaN	66.429	92	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	462030			43819	7326;13303	36229	36252							0.0562091155663893
PRDLCGRIL	9	Unmodified	_PRDLCGRIL_					0	0	0		nc|ENSG00000172890|Q6IA69-2|NADSYN1;ENSG00000172890|ENST00000319023|NADSYN1;ENST00000531236.1_1_11:71192815-71195619:+|nuORF	nc|ENSG00000172890|Q6IA69-2|NADSYN1;ENST00000531236.1_1_11:71192815-71195619:+|nuORF	nc|ENSG00000172890|Q6IA69-2|NADSYN1	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	521.794943	1041.57533	-0.84262	-0.00043968	1.8993	0.00099103	1.0566	0.00055135	521.7951886456917	77.54	1.6221	75.187	74.629	76.251	-2.3527	-0.14394	0.00086373	NaN	66.429	89	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	557750			43820	7326;13303	36229	36252							0.0562091155663893
PRDLLTGEQ	9	Unmodified	_PRDLLTGEQ_					0	0	0		ENST00000424478.5_1_14:45565874-45584113:+|nuORF;ENSG00000185246|ENST00000355765|PRPF39;ENST00000554429.5_1_14:45565874-45579180:+|nuORF	ENST00000424478.5_1_14:45565874-45584113:+|nuORF	ENST00000424478.5_1_14:45565874-45584113:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.7879028320312	2	514.772188	1027.52982	-0.64602	-0.00033256	1.8168	0.00093522	1.1707	0.00060267	514.7723540405779	39.37	0.59277	36.661	36.41	37.002	-2.7097					13	11	2	0	0	0	0.027462	1	1924	1924		37.812	0	1	8867.6			43821	8237	36230	36253	47261	47261					0.017159645752371944
PRDNPRNTRF	10	Unmodified	_PRDNPRNTRF_					0	0	0		ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	ENSG00000163510|ENST00000410053|CWC22	MULTI-MSMS	OvCa9_classI_Rep4_	4	636.8322143554688	2	636.831434	1271.64832	0.048143	3.0659E-05	0.24657	0.00015702	0.29471	0.00018768	636.8315313630583	20.592	1.3682	19.254	18.902	20.27	-1.3386					80	27	4	0	0	0	0.67729	1	98	98		28.081	0	1	475280			43822	6318	36231	36254	47262	47262					0.023357566035883792
PRDPLPDTPP	10	Unmodified	_PRDPLPDTPP_					0	0	0		nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000100485|ENST00000216373|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	MULTI-MSMS	OvCa9_classI_Rep2	2	552.7857055664062	2	552.787838	1103.56112	1.7554	0.00097038	-4.2643	-0.0023572	-2.5088	-0.0013869	552.7854142273841	29.865	0.63211	27.155	26.975	27.607	-2.7097					29	12	3	0	0	0	0.59703	1	766	766		42.396	0	1	49044			43823	2076	36232	36255	47263	47263					0.013485376093285595
PRDVTTRIATP	11	Unmodified	_PRDVTTRIATP_					0	0	0			REV__SORBS2|p.E881Dfs*37|1|0.67|ENSG00000154556|chr4:185615156-185615156|C/-|frameshift_variant	REV__SORBS2|p.E881Dfs*37|1|0.67|ENSG00000154556|chr4:185615156-185615156|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	613.842529296875	2	613.846219	1225.67788	-1.3186	-0.00080939	1.0654	0.00065396	-0.25321	-0.00015543	613.846862023676	60.404	2.094	57.633	57.032	59.126	-2.7702					128	39	6	0	0	0	0.61983	2	4433	4429;4433		42.864	2.0861	1	1043300	+		43824	20388	36233	36256	47264;47265	47265					0.07407275829086757
PRDYYTKT	8	Unmodified	_PRDYYTKT_					0	0	0		nc|ENSG00000167202|Q9UPU7-2|TBC1D2B;ENSG00000167202|ENST00000300584|TBC1D2B;ENST00000472786.1_1_15:78295640-78309087:-|nuORF;nc|ENSG00000167202|Q9UPU7-3|TBC1D2B	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.7946166992188	2	522.261456	1042.50836	-0.99356	-0.0005189	0.78864	0.00041188	-0.20492	-0.00010702	522.2615821592647	77.326	0.51959	74.974	74.734	75.253	-2.3527					13	9	2	0	0	0	0.028476	1	4053	4053		58.782	18.209	1	11808			43825	6770	36234	36257	47266	47266					-0.011194204534831442
PREAELESP	9	Unmodified	_PREAELESP_					0	0	0		nc|ENSG00000064607|Q8IX01-4|SUGP2;nc|ENSG00000064607|Q8IX01-3|SUGP2;ENSG00000064607|ENST00000452918|SUGP2;ENST00000598240.1_1_19:19105804-19136912:-|nuORF	nc|ENSG00000064607|Q8IX01-4|SUGP2	nc|ENSG00000064607|Q8IX01-4|SUGP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.8281860351562	2	514.256371	1026.49819	1.0475	0.00053867	-1.4132	-0.00072676	-0.36576	-0.00018809	514.2555078765334	68.014	1.0261	64.524	64.037	65.064	-3.4902					41	20	3	0	0	0	0.027433	1	5074	5074		34.173	5.023	1	51686			43826	1301	36235	36258	47267	47267					-0.014000281787275526
PREHRRGH	8	Unmodified	_PREHRRGH_					0	0	0		ENST00000284548.15_1_1:228475978-228476398:+|nuORF	ENST00000284548.15_1_1:228475978-228476398:+|nuORF	ENST00000284548.15_1_1:228475978-228476398:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	522.7843627929688	2	522.781548	1043.54854	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.821	1	62.336	61.836	62.836	-3.4854								0	0	0	0.30129	1	4756	4756		51.335	8.9393	1				43827	10071	36236	36259	47268	47268					0.02850983780331262
PREKTVLV	8	Unmodified	_PREKTVLV_					0	0	0		ENST00000462534.5_1_2:220415559-220417014:-|nuORF;ENST00000489804.5_1_2:220415549-220417393:-|nuORF;ENST00000465149.1_1_2:220416245-220417504:-|nuORF;ENSG00000124006|ENST00000404537|OBSL1	ENST00000462534.5_1_2:220415559-220417014:-|nuORF	ENST00000462534.5_1_2:220415559-220417014:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.2931823730469	2	471.292559	940.570566	0.20034	9.4418E-05	-0.50937	-0.00024006	-0.30903	-0.00014564	471.29218878217125	82.54	1.368	79.857	79.489	80.857	-2.6829					80	27	4	0	0	0	0.65062	1	6847	6847		53.351	3.9099	1	1141500			43828	3621	36237	36260	47269	47269					0.0979035068551184
PREMFNHFI	9	Unmodified	_PREMFNHFI_					0	0	0			REV__ITIH4|p.L547P|1|0.11|ENSG00000055955|chr3:52821030-52821030|A/G|missense_variant	REV__ITIH4|p.L547P|1|0.11|ENSG00000055955|chr3:52821030-52821030|A/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	595.3317260742188	2	595.792401	1189.57025	1.7647	0.0010514	-0.59546	-0.00035477	1.1693	0.00069665	595.7917075290883	93.763	0.37318	93.763	93.468	93.841	0					13	8	2	0	0	0	0.027462	1	10164	10164		15.642	3.435	1	412980	+		43829	28318	36238	36261	47270	47270					-0.016953923059872977
PRESLTFTLV	10	Unmodified	_PRESLTFTLV_					0	0	0		ENST00000407479.5_1_16:3712853-3713087:+|nuORF	ENST00000407479.5_1_16:3712853-3713087:+|nuORF	ENST00000407479.5_1_16:3712853-3713087:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	582.3610229492188	2	581.826963	1161.63937	-1.9259	-0.0011206	1.3335	0.00077586	-0.59243	-0.00034469	582.328855863971	116.99	0.64375	115.96	115.75	116.39	-1.0324					17	12	2	0	0	0	0.026931	1	8807	8807		30.318	0	1	18676			43830	11496	36239	36262	47271	47271					0.06501970194563
PREVRPIT	8	Unmodified	_PREVRPIT_					0	0	0		ENSG00000065491|ENST00000373491|TBC1D22B	ENSG00000065491|ENST00000373491|TBC1D22B	ENSG00000065491|ENST00000373491|TBC1D22B	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.288330078125	2	484.287808	966.561064	0.83916	0.0004064	-1.1698	-0.00056651	-0.33063	-0.00016012	484.28710186592366	37.296	1.4439	34.403	34.142	35.586	-2.8925					55	28	4	0	0	0	0.72896	1	1359	1359		37.159	0	1	173320			43831	1327	36240	36263	47272	47272					0.07644582399984756
PREVRPIT	8	Unmodified	_PREVRPIT_					0	0	0		ENSG00000065491|ENST00000373491|TBC1D22B	ENSG00000065491|ENST00000373491|TBC1D22B	ENSG00000065491|ENST00000373491|TBC1D22B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	484.287808	966.561064	-2.2712	-0.0010999	2.0616	0.00099843	-0.2096	-0.00010151	484.2887098726606	37.364	0.83541	34.655	34.436	35.271	-2.7097	0.12579	0.0019932	NaN	37.159	27	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69934			43832	1327	36240	36263							0.07644582399984756
PRFALPKFG	9	Unmodified	_PRFALPKFG_					0	0	0		nc|ENSG00000105227|Q9BXM0-3|PRX;ENST00000291825.11_2_19:40899875-40904000:-|nuORF;ENSG00000105227|ENST00000324001|PRX	nc|ENSG00000105227|Q9BXM0-3|PRX	nc|ENSG00000105227|Q9BXM0-3|PRX	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.8005981445312	2	516.803094	1031.59164	-1.2368	-0.00063916	-2.6733	-0.0013816	-3.9101	-0.0020208	516.8015909054096	42.416	1.1933	39.436	39.264	40.458	-2.9804					51	22	4	0	0	0	0.46377	1	1973	1973		45.952	1.5748	1	359750			43833	2430	36241	36264	47273	47273					0.07710360785040393
PRFALPKFG	9	Unmodified	_PRFALPKFG_					0	0	0		nc|ENSG00000105227|Q9BXM0-3|PRX;ENST00000291825.11_2_19:40899875-40904000:-|nuORF;ENSG00000105227|ENST00000324001|PRX	nc|ENSG00000105227|Q9BXM0-3|PRX	nc|ENSG00000105227|Q9BXM0-3|PRX	MULTI-MATCH	OvCa9_classI_Rep2	2		2	516.803094	1031.59164	1.0996	0.00056828	-5.088	-0.0026295	-3.9884	-0.0020612	516.800304075017	42.228	1.1348	39.519	39.127	40.262	-2.7097	0.041408	-0.0015048	NaN	45.952	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99800			43834	2430	36241	36264							0.07710360785040393
PRFAPLVLL	9	Unmodified	_PRFAPLVLL_					0	0	0		ENST00000434423.4_1_7:72395856-72396045:+|nuORF	ENST00000434423.4_1_7:72395856-72396045:+|nuORF	ENST00000434423.4_1_7:72395856-72396045:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	513.3292236328125	2	513.328945	1024.64334	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.593	1	65.103	64.603	65.603	-3.4902								0	0	0	0.17045	1	5095	5095		50.025	2.1089	1				43835	11842	36242	36265	47274	47274					0.13200104478937646
PRFCHLLAV	9	Unmodified	_PRFCHLLAV_					0	0	0		nc|ENSG00000204701|O76001|OR2J3;ENSG00000204701|ENST00000641151|OR2J3	nc|ENSG00000204701|O76001|OR2J3	nc|ENSG00000204701|O76001|OR2J3	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.311279296875	2	528.294579	1054.57461	-0.015857	-8.377E-06	0.55918	0.00029541	0.54333	0.00028704	528.2950811401771	45.18	0.3133	45.18	44.932	45.245	0					13	6	3	0	0	0	0.027462	1	3079	3079		30.504	0.18592	1	648170			43836	9023	36243	36266	47275	47275					0.04950116907593838
PRFFFIFH	8	Unmodified	_PRFFFIFH_					0	0	0			REV__ENST00000485835.1_1_17:38151035-38151804:+|nuORF	REV__ENST00000485835.1_1_17:38151035-38151804:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	555.7979736328125	2	555.797812	1109.58107	0.67356	0.00037436	0.44632	0.00024806	1.1199	0.00062243	555.7980692819577	66.887	2.2263	64.226	63.651	65.878	-2.661					106	44	4	0	0	0	0.72134	2	5177	5177;5199		39.021	3.4032	1	1196600	+		43837	26572	36244	36267	47276;47277	47276					0.03066378130620251
PRFIARKRG	9	Unmodified	_PRFIARKRG_					0	0	0		ENST00000559358.1_1_17:62006588-62007812:-|nuORF;ENSG00000007312|ENST00000006750|CD79B;nc|ENSG00000007312|P40259-3|CD79B	ENST00000559358.1_1_17:62006588-62007812:-|nuORF	ENST00000559358.1_1_17:62006588-62007812:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	550.8143310546875	2	550.843616	1099.67268	0.37043	0.00020405	1.4872	0.00081922	1.8577	0.0010233	550.8447497186328	106.4	0.44827	106.08	105.82	106.26	-0.31975					9	8	2	0	0	0	0.027462	1	9925	9925		24.203	7.7296	1	5534			43838	13716	36245	36268	47278	47278					0.12683061547772922
PRFISPASQ	9	Unmodified	_PRFISPASQ_					0	0	0		nc|ENSG00000124493|Q14833-3|GRM4;nc|ENSG00000124493|Q14833-2|GRM4;nc|ENSG00000124493|Q14833-4|GRM4;nc|ENSG00000124493|Q14833-5|GRM4;ENSG00000124493|ENST00000538487|GRM4;ENST00000296479.9_1_3:51747995-51752125:+|nuORF;ENSG00000164082|ENST00000395052|GRM2	nc|ENSG00000124493|Q14833-3|GRM4	nc|ENSG00000124493|Q14833-3|GRM4	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.77294921875	2	501.771991	1001.52943	-1.4022	-0.00070357	4.2381	0.0021266	2.8359	0.001423	501.77401538185006	41.821	0.46895	38.841	38.542	39.011	-2.9804					23	8	3	0	0	0	0.40818	1	1894	1894		51.193	1.7511	1	181560			43839	3655	36246	36269	47279	47279					0.02872589646040069
PRFISPASQ	9	Unmodified	_PRFISPASQ_					0	0	0		nc|ENSG00000124493|Q14833-3|GRM4;nc|ENSG00000124493|Q14833-2|GRM4;nc|ENSG00000124493|Q14833-4|GRM4;nc|ENSG00000124493|Q14833-5|GRM4;ENSG00000124493|ENST00000538487|GRM4;ENST00000296479.9_1_3:51747995-51752125:+|nuORF;ENSG00000164082|ENST00000395052|GRM2	nc|ENSG00000124493|Q14833-3|GRM4	nc|ENSG00000124493|Q14833-3|GRM4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	501.771991	1001.52943	0.27469	0.00013783	2.9737	0.0014921	3.2483	0.0016299	501.773307270537	41.665	0.39401	38.955	38.635	39.029	-2.7097	0.05706	-0.00081815	NaN	51.193	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47855			43840	3655	36246	36269							0.02872589646040069
PRFQVLVL	8	Unmodified	_PRFQVLVL_					0	0	0			REV__nc|ENSG00000179397|Q5SY80-3|CATSPERE	REV__nc|ENSG00000179397|Q5SY80-3|CATSPERE	MULTI-MSMS	OvCa9_classI_Rep3	3	486.3052062988281	2	486.30547	970.596387	0.78572	0.0003821	-1.2488	-0.0006073	-0.46308	-0.0002252	486.30477333878326	121.54	2.2543	120.51	120.01	122.27	-1.0286					108	42	4	0	0	0	0.7043	1	9304	9304		42.474	1.9018	1	892460	+		43841	22122	36247	36270	47280	47280					0.10991244927799926
PRFTGTIAS	9	Unmodified	_PRFTGTIAS_					0	0	0		ENSG00000111684|ENST00000261407|LPCAT3;nc|ENSG00000111684|Q6P1A2-2|LPCAT3;LPCAT3|p.F337L|1|0.04|ENSG00000111684|chr12:6978370-6978370|G/T|missense_variant	ENSG00000111684|ENST00000261407|LPCAT3	ENSG00000111684|ENST00000261407|LPCAT3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	474.2761535644531	2	475.258717	948.50288	-0.3938	-0.00018716	0.75753	0.00036002	0.36373	0.00017287	475.25894525149806	53.532	0.97226	50.324	50.046	51.018	-3.208					53	18	5	0	0	0	0.027462	1	3297	3297		37.812	3.639	1	169370			43842	2844	36248	36271	47281	47281					0.026569007547323054
PRFTGTIAS	9	Unmodified	_PRFTGTIAS_					0	0	0		ENSG00000111684|ENST00000261407|LPCAT3;nc|ENSG00000111684|Q6P1A2-2|LPCAT3;LPCAT3|p.F337L|1|0.04|ENSG00000111684|chr12:6978370-6978370|G/T|missense_variant	ENSG00000111684|ENST00000261407|LPCAT3	ENSG00000111684|ENST00000261407|LPCAT3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	475.258717	948.50288	-1.2882	-0.00061223	1.4373	0.00068307	0.14906	7.0843E-05	475.25922073272625	53.168	1.4387	50.354	49.985	51.424	-2.8139	0.01527	0.00025263	NaN	37.812	44	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53976			43843	2844	36248	36271							0.026569007547323054
PRFVDKLL	8	Unmodified	_PRFVDKLL_					0	0	0			REV__ENST00000468403.1_1_1:153751119-153751515:+|nuORF	REV__ENST00000468403.1_1_1:153751119-153751515:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.303466796875	2	494.302927	986.591301	0.46995	0.0002323	-1.0529	-0.00052047	-0.58299	-0.00028818	494.3022732791779	113.03	1.0776	111.58	111.21	112.29	-1.4461					63	21	4	0	0	0	0.70469	1	10473	10473		42.396	1.618	1	298120	+		43844	19852	36249	36272	47282	47282					0.09746941065179726
PRGAPAHE	8	Unmodified	_PRGAPAHE_					0	0	0			REV__nc|ENSG00000186854|Q86V40-2|TRABD2A	REV__nc|ENSG00000186854|Q86V40-2|TRABD2A	MULTI-MSMS	OvCa99_classI_Rep5	1	418.21905517578125	2	417.714476	833.4144	2.2423	0.00093664	4.3816	0.0018302	6.6239	0.0027669	417.7161072165159	122.61	1.202	122.61	122.27	123.47	0					34	25	2	0	0	0	0.73938	1	14093	14093		31.955	5.1588	1	67714	+		43845	22614	36250	36273	47283	47283					-0.008970947651050665
PRGAPLLVVSA	11	Unmodified	_PRGAPLLVVSA_					0	0	0			REV__ENSG00000144224|ENST00000272638|UBXN4	REV__ENSG00000144224|ENST00000272638|UBXN4	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3301391601562	2	540.332216	1078.64988	0.34656	0.00018726	-4.1131	-0.0022225	-3.7666	-0.0020352	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.69455	1	13699	13699		31.53	8.0071	1	342200	+		43846	19896	36251	36274	47284	47284					0.11369997639690155
PRGAVRLR	8	Unmodified	_PRGAVRLR_					0	0	0		nc|ENSG00000112425|O95278-4|EPM2A;nc|ENSG00000112425|O95278-5|EPM2A;nc|ENSG00000112425|O95278-2|EPM2A;ENSG00000112425|ENST00000367519|EPM2A	nc|ENSG00000112425|O95278-4|EPM2A	nc|ENSG00000112425|O95278-4|EPM2A	MULTI-MSMS	OvCa99_classI_Rep5	1	462.7967529296875	2	462.796135	923.577717	-0.4153	-0.0001922	0.66267	0.00030668	0.24738	0.00011448	462.796326913247	24.361	0.60026	24.361	24.188	24.788	0					16	11	2	0	0	0	0.73626	1	438	438		33.516	0	1	73929			43847	2906	36252	36275	47285	47285					0.11287128076617137
PRGDPVLKPL	10	Unmodified	_PRGDPVLKPL_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.3309326171875	2	546.332216	1090.64988	0.57396	0.00031357	-3.4319	-0.0018749	-2.8579	-0.0015614	546.3302191318373	36.413	1.4954	33.564	33.09	34.585	-2.849					89	29	4	0	0	0	0.67931	1	1232	1232		32.812	1.2826	1	390640			43848	889	36253	36276	47286	47286					0.10817997639651367
PRGGPALRDP	10	Unmodified	_PRGGPALRDP_					0	0	0		CON__ENSEMBL:ENSBTAP00000023055	CON__ENSEMBL:ENSBTAP00000023055	CON__ENSEMBL:ENSBTAP00000023055	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.3597412109375	2	518.28834	1034.56213	-0.67407	-0.00034936	-2.0619	-0.0010687	-2.736	-0.001418	518.2872436035633	136.52	0.29477	135.42	135.29	135.59	-1.1076					7	5	2	0	0	0	0.026681	1	11097	11097		44.377	12.422	1	15353		+	43849	605	36254	36277	47287	47287					0.04622796768876469
PRGGREKRWS	10	Unmodified	_PRGGREKRWS_					0	0	0			REV__ENST00000495067.1_1_7:87505864-87507564:+|nuORF	REV__ENST00000495067.1_1_7:87505864-87507564:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	410.2278137207031	3	410.226772	1227.65849	-0.59158	-0.00024268	3.3895	0.0013905	2.798	0.0011478	410.22807386978417	38.111	1.8292	35.402	35.124	36.953	-2.7097					84	36	4	0	0	0	0.74773	1	1756	1756		25.126	1.6033	1	218460	+		43850	26593	36255	36278	47288	47288					0.05376364328844829
PRGKCVVANG	10	Unmodified	_PRGKCVVANG_					0	0	0			REV__ENSG00000140968|ENST00000268638|IRF8	REV__ENSG00000140968|ENST00000268638|IRF8	MULTI-MSMS	OvCa99_classI_Rep5	1	500.7710876464844	2	500.771468	999.528384	0.60601	0.00030347	0.61563	0.00030829	1.2216	0.00061176	500.77150217523996	159.56	0.47794	159.56	159.38	159.86	0					15	9	2	0	0	0	0.78463	1	18710	18710		20.947	0	1	37617	+		43851	19709	36256	36279	47289	47289					0.028600520054851586
PRGKCVVANG	10	Unmodified	_PRGKCVVANG_					0	0	0			REV__ENSG00000140968|ENST00000268638|IRF8	REV__ENSG00000140968|ENST00000268638|IRF8	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	500.771468	999.528384	0.60601	0.00030347	0.61563	0.00030829	1.2216	0.00061176	500.77150217523996	159.56	0.47794	159.56	159.38	159.86	0	0	0	NaN	20.947	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37617	+		43852	19709	36256	36279							0.028600520054851586
PRGKESAA	8	Unmodified	_PRGKESAA_					0	0	0		ENST00000469195.5_3_6:35227376-35248953:+|nuORF	ENST00000469195.5_3_6:35227376-35248953:+|nuORF	ENST00000469195.5_3_6:35227376-35248953:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	408.2223205566406	2	408.222134	814.429715	-0.027736	-1.1322E-05	0.46194	0.00018857	0.4342	0.00017725	408.22219810033897	33.657	1.3881	30.947	30.571	31.959	-2.7097					59	27	3	0	0	0	0.73494	1	1242	1242		34.173	1.3601	1	367700			43853	12344	36257	36280	47290	47290					0.01507772032084631
PRGKGLVGR	9	Unmodified	_PRGKGLVGR_					0	0	0		ENST00000461408.2_1_15:59040902-59041232:-|nuORF	ENST00000461408.2_1_15:59040902-59041232:-|nuORF	ENST00000461408.2_1_15:59040902-59041232:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	470.2953796386719	2	470.295968	938.577383	-0.49251	-0.00023162	-0.04838	-2.2753E-05	-0.54089	-0.00025438	470.29591238963496	32.315	1.7376	29.606	29.382	31.119	-2.7097					90	34	5	0	0	0	0.62352	1	1108	1108		29.15	9.7896	1	1326000			43854	12178	36258	36281	47291	47291					0.10563708356755797
PRGKLWAL	8	Unmodified	_PRGKLWAL_					0	0	0			REV__ENST00000411987.5_1_3:12611703-12613612:+|nuORF	REV__ENST00000411987.5_1_3:12611703-12613612:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.7562561035156	2	470.789987	939.565421	0.95475	0.00044949	0.77347	0.00036414	1.7282	0.00081363	470.79009086580425	60.105	0.24533	56.675	56.504	56.749	-3.43					6	4	2	0	0	0	0.028476	1	4039	4039		44.531	11.015	1	13000	+		43855	25492	36259	36282	47292	47292					0.09322091613535122
PRGLWVTR	8	Unmodified	_PRGLWVTR_					0	0	0			REV__ATP9A|p.H45Rfs*76|1|0.05|ENSG00000054793|chr20:51729913-51729914|-/C|frameshift_variant	REV__ATP9A|p.H45Rfs*76|1|0.05|ENSG00000054793|chr20:51729913-51729914|-/C|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.78607177734375	2	492.790518	983.566484	-0.72169	-0.00035564	0.24953	0.00012296	-0.47217	-0.00023268	492.7898455226119	42.398	0.55501	39.418	38.906	39.461	-2.9804					16	10	2	0	0	0	0.028476	1	1958	1958		27.882	0	1	40251	+		43856	15682	36260	36283	47293	47293					0.07404305982470305
PRGMELFLVLP	11	Unmodified	_PRGMELFLVLP_					0	0	0		ENST00000555923.1_1_14:81955203-81955461:-|nuORF	ENST00000555923.1_1_14:81955203-81955461:-|nuORF	ENST00000555923.1_1_14:81955203-81955461:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	423.94061279296875	3	424.577531	1270.71076	-0.67392	-0.00028613	2.6589	0.0011289	1.985	0.00084277	424.5785358479407	80.365	1.4701	77.654	77.22	78.69	-2.7106					54	29	3	0	0	0	0.025722	1	6550	6550		41.08	31.434	1	75128			43857	13652	36261	36284	47294	47294					0.08623766627579244
PRGMELFLVLP	11	Unmodified	_PRGMELFLVLP_					0	0	0		ENST00000555923.1_1_14:81955203-81955461:-|nuORF	ENST00000555923.1_1_14:81955203-81955461:-|nuORF	ENST00000555923.1_1_14:81955203-81955461:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		3	424.577531	1270.71076	0.71563	0.00030384	1.2875	0.00054663	2.0031	0.00085047	424.57802188803277	80.154	1.4254	77.814	77.463	78.888	-2.3399	0.080182	-0.00062421	NaN	45.908	50	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65101			43858	13652	36261	36284							0.08623766627579244
PRGPDPRPR	9	Unmodified	_PRGPDPRPR_					0	0	0			REV__ENST00000465155.5_1_1:212782062-212788455:+|nuORF	REV__ENST00000465155.5_1_1:212782062-212788455:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	524.2933959960938	2	524.293956	1046.57336	-0.44611	-0.00023389	0.37088	0.00019445	-0.075225	-3.944E-05	524.2938527461853	32.611	0.54311	29.902	29.729	30.272	-2.7097					20	10	2	0	0	0	0.69913	1	1099	1099		18.262	2.6203	1	26092	+		43859	26164	36262	36285	47295	47295					0.05193618863017946
PRGPDPRPR	9	Unmodified	_PRGPDPRPR_					0	0	0			REV__ENST00000465155.5_1_1:212782062-212788455:+|nuORF	REV__ENST00000465155.5_1_1:212782062-212788455:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	524.293956	1046.57336	-0.44611	-0.00023389	0.37088	0.00019445	-0.075225	-3.944E-05	524.2938527461853	32.611	0.54311	29.902	29.729	30.272	-2.7097	-0.0065931	-0.00064589	NaN	18.262	20	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26092	+		43860	26164	36262	36285							0.05193618863017946
PRGPDPRPR	9	Unmodified	_PRGPDPRPR_					0	0	0			REV__ENST00000465155.5_1_1:212782062-212788455:+|nuORF	REV__ENST00000465155.5_1_1:212782062-212788455:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	524.293956	1046.57336	0.16651	8.73E-05	7.2363	0.0037939	7.4028	0.0038812	524.29895265073	32.61	0.4076	29.915	29.745	30.153	-2.6954	0.0065931	0.0065531	NaN	18.262	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9385.7	+		43861	26164	36262	36285							0.05193618863017946
PRGPLASLLL	10	Unmodified	_PRGPLASLLL_					0	0	0		nc|ENSG00000062038|P22223-2|CDH3;ENSG00000062038|ENST00000264012|CDH3	nc|ENSG00000062038|P22223-2|CDH3	nc|ENSG00000062038|P22223-2|CDH3	MULTI-MSMS	OvCa9_classI_Rep2	2	518.8292846679688	2	518.829309	1035.64407	-0.53777	-0.00027901	0.10892	5.6512E-05	-0.42884	-0.0002225	518.8292895658562	121.25	2.223	121.05	120.51	122.73	-0.19719					126	44	4	0	0	0	0.37436	1	11739	11739		71.877	0.58177	1	627930			43862	1275	36263	36286	47296	47296					0.12766899127996112
PRGPLASLLL	10	Unmodified	_PRGPLASLLL_					0	0	0		nc|ENSG00000062038|P22223-2|CDH3;ENSG00000062038|ENST00000264012|CDH3	nc|ENSG00000062038|P22223-2|CDH3	nc|ENSG00000062038|P22223-2|CDH3	MULTI-MSMS	OvCa9_classI_Rep3	3	518.8282470703125	2	518.829309	1035.64407	1.7024	0.00088324	-2.0698	-0.0010739	-0.36745	-0.00019064	518.8281964515016	122.5	2.5536	121.47	120.64	123.19	-1.0286					133	48	4	0	0	0	0.37436	2	9436	9436;9481		71.877	3.599	1	994930			43863	1275	36263	36286	47297;47298	47297					0.12766899127996112
PRGPPSPPAP	10	Unmodified	_PRGPPSPPAP_					0	0	0		ENSG00000100603|ENST00000261531|SNW1;ENST00000553565.1_1_14:78197307-78203348:-|nuORF	ENSG00000100603|ENST00000261531|SNW1	ENSG00000100603|ENST00000261531|SNW1	MSMS	OvCa9_classI_Rep2	2	486.76446533203125	2	486.766709	971.518865	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.95	1	30.24	29.74	30.74	-2.7097								0	0	0	0.15276	1	1135	1135		42.396	5.237	1				43864	2089	36264	36287	47299	47299					0.03196606991605222
PRGPRKGG	8	Unmodified	_PRGPRKGG_					0	0	0		nc|ENSG00000129993|O75081-4|CBFA2T3;ENSG00000129993|ENST00000268679|CBFA2T3;nc|ENSG00000129993|O75081-5|CBFA2T3	nc|ENSG00000129993|O75081-4|CBFA2T3	nc|ENSG00000129993|O75081-4|CBFA2T3	MULTI-MSMS	OvCa9_classI_Rep4_	4	412.746337890625	2	412.746111	823.477669	3.1505	0.0013004	-2.8121	-0.0011607	0.33847	0.0001397	412.74482870844463	135.72	2.2055	134.18	133.51	135.72	-1.5437					107	44	4	0	0	0	0.74595	1	13193	13193		14.664	0	1	1010100			43865	3951	36265	36288	47300	47300					0.05886890742806372
PRGRGVRDT	9	Unmodified	_PRGRGVRDT_					0	0	0			REV__ENSG00000183808|ENST00000520560|RBM12B	REV__ENSG00000183808|ENST00000520560|RBM12B	MULTI-MSMS	OvCa9_classI_Rep2	2	507.2833251953125	2	507.283589	1012.55262	0.0066851	3.3913E-06	-0.10662	-5.4086E-05	-0.099933	-5.0694E-05	507.283412188162	31.081	1.5294	28.371	28.15	29.679	-2.7097					66	30	3	0	0	0	0.48324	1	921	921		44.117	1.7207	1	500220	+		43866	22387	36266	36289	47301	47301					0.046850284833681144
PRGRREPLI	9	Unmodified	_PRGRREPLI_					0	0	0			REV__ENSG00000181555|ENST00000409792|SETD2;REV__SETD2|p.E983Kfs*23|1|0.1|ENSG00000181555|chr3:47121689-47121689|C/-|frameshift_variant	REV__SETD2|p.E983Kfs*23|1|0.1|ENSG00000181555|chr3:47121689-47121689|C/-|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	547.3333129882812	2	547.333082	1092.65161	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.02	1	125.02	124.52	125.52	0								0	0	0	0.17131	1	14438	14438		47.657	0	1		+		43867	22239;29354	36267	36290	47302	47302					0.10899051448268438
PRGRRRVI	8	Unmodified	_PRGRRRVI_					0	0	0			REV__KMT2A|p.P2471Lfs*35|1|0.08|ENSG00000118058|chr11:118503312-118503312|C/-|frameshift_variant;REV__nc|ENSG00000118058|Q03164-2|KMT2A	REV__KMT2A|p.P2471Lfs*35|1|0.08|ENSG00000118058|chr11:118503312-118503312|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	505.3295593261719	2	505.328134	1008.64171	0.060672	3.0659E-05	2.1012	0.0010618	2.1619	0.0010925	505.3291044339654	71.654	1.8272	69.147	68.858	70.685	-2.5072					76	34	5	0	0	0	0.7043	1	5785	5785		42.474	3.6683	1	555060	+		43868	28341;18378	36268	36291	47303	47303					0.13773908233554266
PRGRRRVI	8	Unmodified	_PRGRRRVI_					0	0	0			REV__KMT2A|p.P2471Lfs*35|1|0.08|ENSG00000118058|chr11:118503312-118503312|C/-|frameshift_variant;REV__nc|ENSG00000118058|Q03164-2|KMT2A	REV__KMT2A|p.P2471Lfs*35|1|0.08|ENSG00000118058|chr11:118503312-118503312|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.33026123046875	2	505.328134	1008.64171	-1.6061	-0.00081162	3.6339	0.0018363	2.0278	0.0010247	505.32987525313087	72.929	1.353	69.533	69.204	70.557	-3.3961					74	27	4	0	0	0	0.7043	1	5631	5631		42.474	0	1	627560	+		43869	28341;18378	36268	36291	47304	47304					0.13773908233554266
PRGRRRWGG	9	Unmodified	_PRGRRRWGG_					0	0	0		chr12:6766750-6769988|96|21.71|0.01|10.86|+|1|PTMS,None|2	chr12:6766750-6769988|96|21.71|0.01|10.86|+|1|PTMS,None|2	chr12:6766750-6769988|96|21.71|0.01|10.86|+|1|PTMS,None|2	MULTI-MSMS	OvCa9_classI_Rep2	2	549.31396484375	2	549.313015	1096.61148	-1.9654	-0.0010796	-0.19461	-0.0001069	-2.16	-0.0011865	549.3130709406702	37.224	0.93481	34.514	34.238	35.173	-2.7097					44	18	3	0	0	0	0.59983	1	1655	1655		31.955	6.5047	1	132520			43870	329	36269	36292	47305	47305					0.06703549568351264
PRGVFVPEL	9	Unmodified	_PRGVFVPEL_					0	0	0		nc|ENSG00000141497|Q9H091-2|ZMYND15	nc|ENSG00000141497|Q9H091-2|ZMYND15	nc|ENSG00000141497|Q9H091-2|ZMYND15	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.3119812011719	2	507.292559	1012.57057	-2.3623	-0.0011984	-1.9819	-0.0010054	-4.3442	-0.0022038	507.29150736276665	35.317	0.94425	32.607	32.306	33.251	-2.7097					37	18	3	0	0	0	0.027462	1	1398	1398		35.618	0	1	73221			43871	15062	36270	36293	47306	47306					0.06478350685517853
PRGVVPFQA	9	Unmodified	_PRGVVPFQA_					0	0	0		nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1;ENSG00000105939|ENST00000242351|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-5|ZC3HAV1;nc|ENSG00000105939|Q7Z2W4-2|ZC3HAV1	nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1	nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.7738952636719	2	485.777077	969.5396	-1.0285	-0.00049961	-3.8424	-0.0018666	-4.8709	-0.0023662	485.7752351689222	43.149	1.3869	40.142	39.801	41.188	-3.0074					74	26	5	0	0	0	0.55588	1	2078	2078		37.159	3.6435	1	1096600			43872	2514	36271	36294	47307	47307					0.053611973712691
PRHFKQGR	8	Unmodified	_PRHFKQGR_					0	0	0		ENSG00000248109|ENST00000638089|MARCOL	ENSG00000248109|ENST00000638089|MARCOL	ENSG00000248109|ENST00000638089|MARCOL	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.7717895507812	2	513.291217	1024.56788	-0.80924	-0.00041538	-0.2877	-0.00014768	-1.0969	-0.00056305	513.2905231638028	50.456	0.44174	50.456	50.288	50.73	0					12	9	2	0	0	0	0.028476	1	3830	3830		45.952	1.8352	1	171900			43873	9405	36272	36295	47308	47308					0.0565794007122804
PRHFKQGR	8	Unmodified	_PRHFKQGR_					0	0	0		ENSG00000248109|ENST00000638089|MARCOL	ENSG00000248109|ENST00000638089|MARCOL	ENSG00000248109|ENST00000638089|MARCOL	MULTI-MATCH	OvCa9_classI_Rep2	2		2	513.291217	1024.56788	-1.0806	-0.00055468	6.5115	0.0033423	5.4309	0.0027876	513.2917463954216	53.258	1.1364	50.445	49.788	50.925	-2.8139	-0.0059184	0.0052883	NaN	55.504	37	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38270			43874	9405	36272	36295							0.0565794007122804
PRHHAGGE	8	Unmodified	_PRHHAGGE_					0	0	0		nc|ENSG00000185760|Q9NR82-3|KCNQ5;nc|ENSG00000185760|Q9NR82-4|KCNQ5;nc|ENSG00000185760|Q9NR82-5|KCNQ5;nc|ENSG00000185760|Q9NR82-2|KCNQ5;ENSG00000185760|ENST00000370398|KCNQ5;nc|ENSG00000185760|Q9NR82-7|KCNQ5;nc|ENSG00000185760|Q9NR82-6|KCNQ5	nc|ENSG00000185760|Q9NR82-3|KCNQ5	nc|ENSG00000185760|Q9NR82-3|KCNQ5	MULTI-SECPEP	OvCa99_classI_Rep5	1	430.2179260253906	2	430.709725	859.404898	-1.1471	-0.00049408	1.4467	0.0006231	0.29956	0.00012902	430.70927136343136	43.891	0.34366	43.891	43.737	44.08	0					12	7	2	0	0	0	0.028476	1	2935	2935		35.201	24.935	1	100070			43875	15217	36273	36296	47309	47309					-0.03042863050620781
PRHKKKKKK	9	Unmodified	_PRHKKKKKK_					0	0	0		ENST00000532388.5_1_8:70617264-70744908:-|nuORF;nc|ENSG00000137571|Q9H2Y9-3|SLCO5A1;nc|ENSG00000137571|Q9H2Y9-2|SLCO5A1;ENSG00000137571|ENST00000260126|SLCO5A1	ENST00000532388.5_1_8:70617264-70744908:-|nuORF	ENST00000532388.5_1_8:70617264-70744908:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.320556640625	2	589.403841	1176.79313	1.9082	0.0011247	-2.7082	-0.0015962	-0.79994	-0.00047149	589.4035120041409	128.86	0.37103	128.86	128.65	129.02	0					12	7	2	0	0	0	0.027462	1	14911	14911		3.6843	0.27433	1	58735			43876	4598	36274	36297	47310	47310					0.21180469541377533
PRHPLAVRH	9	Unmodified	_PRHPLAVRH_					0	0	0			REV__ENST00000579152.1_1_17:17398683-17399571:-|nuORF	REV__ENST00000579152.1_1_17:17398683-17399571:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	541.8172607421875	2	541.820141	1081.62573	0.49266	0.00026694	-1.9407	-0.0010515	-1.4481	-0.0007846	541.8190905602746	72.496	2.1818	69.894	69.571	71.753	-2.6023					94	43	3	0	0	0	0.53957	1	3483	3483		38.806	7.2763	1	1635600	+		43877	27810	36275	36298	47311	47311					0.08818201996655262
PRHPLAVRH	9	Unmodified	_PRHPLAVRH_					0	0	0			REV__ENST00000579152.1_1_17:17398683-17399571:-|nuORF	REV__ENST00000579152.1_1_17:17398683-17399571:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.8203125	2	541.820141	1081.62573	-1.4293	-0.00077442	-0.63435	-0.0003437	-2.0636	-0.0011181	541.8197631590607	73.641	1.4358	70.245	69.881	71.317	-3.3961					66	29	3	0	0	0	0.46377	1	5720	5720		45.952	3.5558	1	1425500	+		43878	27810	36275	36298	47312	47312					0.08818201996655262
PRHRPHEV	8	Unmodified	_PRHRPHEV_					0	0	0		nc|ENSG00000131584|Q96P50-1|ACAP3;ENSG00000131584|ENST00000354700|ACAP3;ENST00000472541.5_1_1:1235057-1244982:-|nuORF	nc|ENSG00000131584|Q96P50-1|ACAP3	nc|ENSG00000131584|Q96P50-1|ACAP3	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.7879028320312	2	514.280849	1026.54715	-2.4569	-0.0012635	3.2784	0.001686	0.8215	0.00042248	514.282480218051	36.184	0.39581	33.474	33.3	33.696	-2.7097					13	7	2	0	0	0	0.028476	1	1505	1505		47.916	9.1095	1	17177			43879	4076	36276	36299	47313	47313					0.03493349691552794
PRHRYRKRL	9	Unmodified	_PRHRYRKRL_					0	0	0			REV__GALNT15|p.I526Sfs*45|1|0.06|ENSG00000131386|chr3:16219961-16219961|A/-|frameshift_variant	REV__GALNT15|p.I526Sfs*45|1|0.06|ENSG00000131386|chr3:16219961-16219961|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	641.3836059570312	2	641.391796	1280.76904	-6.9547	-0.0044607	-3.9402	-0.0025272	-10.895	-0.0069879	641.3889588117827	161.52	1.4957	160.15	159.74	161.23	-1.3692					63	30	3	0	0	0	0.71696	1	14046	14046		12.207	1.9416	1	83087	+		43880	19010	36277	36300	47314	47314					0.13988629107734596
PRIFRQIQSH	10	Unmodified	_PRIFRQIQSH_					0	0	0			REV__tr|A0A553STC7|A0A553STC7_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_04605PE=3SV=1	REV__tr|A0A553STC7|A0A553STC7_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_04605PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.361083984375	2	641.36237	1280.71019	1.178	0.00075555	-4.3134	-0.0027665	-3.1354	-0.0020109	641.3595241554856	37.402	1.3446	34.509	34.192	35.536	-2.8925					74	26	4	0	0	0	0.50656	1	1370	1370		53.351	10.955	1	265120	+		43881	30949	36278	36301	47315	47315					0.08106108022730041
PRIFRQIQSH	10	Unmodified	_PRIFRQIQSH_					0	0	0			REV__tr|A0A553STC7|A0A553STC7_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_04605PE=3SV=1	REV__tr|A0A553STC7|A0A553STC7_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_04605PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	641.36237	1280.71019	-3.0913	-0.0019827	0.080511	5.1637E-05	-3.0108	-0.001931	641.3623674255459	37.362	0.98343	34.652	34.337	35.32	-2.7097	0.071346	0.0040021	NaN	53.351	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75493	+		43882	30949	36278	36301							0.08106108022730041
PRILLASR	8	Unmodified	_PRILLASR_					0	0	0		ENST00000601887.1_1_19:58640838-58666346:-|nuORF	ENST00000601887.1_1_19:58640838-58666346:-|nuORF	ENST00000601887.1_1_19:58640838-58666346:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	463.3009948730469	2	463.300719	924.586885	-1.235	-0.00057219	1.0563	0.0004894	-0.1787	-8.2791E-05	463.30108478579115	84.367	1.9628	82.82	82.326	84.289	-1.5462					106	38	4	0	0	0	0.6962	1	7260	7260		44.117	6.9577	1	606810			43883	14234	36279	36302	47316	47316					0.12157476642266829
PRILLFYFLVF	11	Unmodified	_PRILLFYFLVF_					0	0	0			REV__tr|A0A553SKC6|A0A553SKC6_NIACIPreproteintranslocasesubunitYajCOS=NialliacirculansOX=1397GN=yajCPE=3SV=1	REV__tr|A0A553SKC6|A0A553SKC6_NIACIPreproteintranslocasesubunitYajCOS=NialliacirculansOX=1397GN=yajCPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.29278564453125	3	476.619836	1426.83768	-0.70853	-0.0003377	-2.5171	-0.0011997	-3.2256	-0.0015374	476.6187814079105	75.167	0.57301	73.196	72.999	73.572	-1.9711					13	10	2	0	0	0	0.026344	1	6156	6156		14.086	3.9821	1	16419	+		43884	30109	36280	36303	47317	47317					0.14133435844178166
PRILPMNVN	9	Unmodified	_PRILPMNVN_					0	0	0		ENST00000512310.1_1_5:72747670-72747820:+|nuORF	ENST00000512310.1_1_5:72747670-72747820:+|nuORF	ENST00000512310.1_1_5:72747670-72747820:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.341796875	2	527.297319	1052.58008	-2.55	-0.0013446	-2.9805	-0.0015716	-5.5305	-0.0029162	527.7968568083731	87.81	0.50176	85.183	84.901	85.403	-2.6269					16	9	2	0	0	0	0.027456	1	7442	7442		47.916	1.9636	1	29330			43885	12992	36281	36304	47318	47318					0.055897956993931075
PRINRMVL	8	Oxidation (M)	_PRINRM(Oxidation (M))VL_		PRINRM(1)VL		PRINRM(45)VL	0	0	1		nc|ENSG00000147799|Q9C0H5|ARHGAP39;ENSG00000147799|ENST00000377307|ARHGAP39	nc|ENSG00000147799|Q9C0H5|ARHGAP39	nc|ENSG00000147799|Q9C0H5|ARHGAP39	MULTI-MSMS	OvCa99_classI_Rep5	1	507.7989807128906	2	507.797486	1013.58042	0.76605	0.000389	0.66668	0.00033854	1.4327	0.00072754	507.79771031912594	151.81	2.0457	151.81	151.4	153.45	0					106	45	4	0	0	0	0.69415	1	17851	17851		44.531	7.372	1	1456700			43886	5376	36282	36305	47319	47319		177			0.07417215419241074
PRIPYNSTL	9	Unmodified	_PRIPYNSTL_					0	0	0			REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|199|3|sense	REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|199|3|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.8123779296875	2	530.792924	1059.57129	-2.5847	-0.0013719	-1.1874	-0.00063026	-3.7721	-0.0020022	530.7922153115414	62.531	1.6878	59.777	59.093	60.781	-2.7541					56	32	2	0	0	0	0.027462	1	4621	4621		16.473	0	1	272960	+		43887	28495	36283	36306	47320	47320					0.04389145334562272
PRIRAQILI	9	Unmodified	_PRIRAQILI_					0	0	0		AADACL3|p.E208Dfs*12|1|0.03|ENSG00000188984|chr1:12725566-12725567|-/T|frameshift_variant;ENSG00000188984|ENST00000359318|AADACL3	AADACL3|p.E208Dfs*12|1|0.03|ENSG00000188984|chr1:12725566-12725567|-/T|frameshift_variant	AADACL3|p.E208Dfs*12|1|0.03|ENSG00000188984|chr1:12725566-12725567|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3574829101562	2	540.356025	1078.6975	0.081497	4.4037E-05	-0.4326	-0.00023376	-0.3511	-0.00018972	540.3556451706003	97.424	1.7719	95.045	94.659	96.431	-2.3786					91	34	4	0	0	0	0.44294	1	8621	8621		47.916	1.9636	1	373460			43888	1	36284	36307	47321	47321					0.16129696630491708
PRISEVLVG	9	Unmodified	_PRISEVLVG_					0	0	0		ENST00000514313.1_1_4:77053589-77055413:-|nuORF	ENST00000514313.1_1_4:77053589-77055413:-|nuORF	ENST00000514313.1_1_4:77053589-77055413:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	485.2884826660156	2	485.290017	968.565481	0.67971	0.00032986	-3.7324	-0.0018113	-3.0527	-0.0014814	485.2880610480828	30.452	1.281	27.743	27.557	28.838	-2.7097					46	25	3	0	0	0	0.68424	1	844	844		21.96	1.013	1	148120			43889	13026	36285	36308	47322	47322					0.07994046822898326
PRISLHFLLSV	11	Unmodified	_PRISLHFLLSV_					0	0	0		ENST00000586659.5_1_19:11275055-11275190:-|nuORF	ENST00000586659.5_1_19:11275055-11275190:-|nuORF	ENST00000586659.5_1_19:11275055-11275190:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	427.9292907714844	3	427.92744	1280.76049	1.7119	0.00073257	3.8354	0.0016413	5.5473	0.0023739	427.9290217090034	65.493	1.4717	62.547	62.198	63.67	-2.9459					92	28	4	0	0	0	0.71789	1	2684	2684		15.921	0.58318	1	349590			43890	14049	36286	36309	47323	47323					0.131342176278622
PRKGRILGII	10	Unmodified	_PRKGRILGII_					0	0	0		nc|ENSG00000114423|Q13191-3|CBLB;nc|ENSG00000114423|Q13191-2|CBLB;ENSG00000114423|ENST00000394030|CBLB	nc|ENSG00000114423|Q13191-3|CBLB	nc|ENSG00000114423|Q13191-3|CBLB	MULTI-MSMS	OvCa9_classI_Rep3	3	561.8772583007812	2	561.877125	1121.7397	0.97315	0.00054679	-0.95783	-0.00053818	0.015327	8.6121E-06	561.8764524181454	64.71	1.2124	61.716	61.395	62.607	-2.9933					52	23	3	0	0	0	0.76627	1	2553	2553		23.042	2.0956	1	78350			43891	3019	36287	36310	47324	47324					0.18369672038897988
PRKKNKYRPIS	11	Unmodified	_PRKKNKYRPIS_					0	0	0		nc|ENSG00000139405|Q96K30-2|RITA1;ENSG00000139405|ENST00000548278|RITA1;nc|ENSG00000139405|Q96K30-3|RITA1	nc|ENSG00000139405|Q96K30-2|RITA1	nc|ENSG00000139405|Q96K30-2|RITA1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.9381408691406	3	462.949127	1385.82555	-1.512	-0.00069998	1.4499	0.00067121	-0.062145	-2.877E-05	462.9500730378558	45.108	0.31033	42.07	41.919	42.23	-3.0385					11	5	3	0	0	0	0.025904	1	2269	2269		36.528	11.46	1	16916			43892	4772	36288	36311	47325	47325					0.14807212153755245
PRKKPNKTL	9	Unmodified	_PRKKPNKTL_					0	0	0			REV__ENSG00000012983|ENST00000682126|MAP4K5	REV__ENSG00000012983|ENST00000682126|MAP4K5	MULTI-MSMS	OvCa9_classI_Rep2	2	541.3455200195312	2	541.345658	1080.67676	-0.18719	-0.00010134	-1.1969	-0.00064794	-1.3841	-0.00074928	541.345222203672	81.441	1.5457	79.792	79.415	80.961	-1.6485					147	29	7	0	0	0	0.51865	1	6967	6967		40.778	7.9657	1	3232100	+		43893	16502	36289	36312	47326	47326					0.139651062508392
PRKKPNKTL	9	Unmodified	_PRKKPNKTL_					0	0	0			REV__ENSG00000012983|ENST00000682126|MAP4K5	REV__ENSG00000012983|ENST00000682126|MAP4K5	MULTI-MSMS	OvCa9_classI_Rep3	3	541.346435546875	2	541.345658	1080.67676	-0.52558	-0.00028452	-1.1101	-0.00060096	-1.6357	-0.00088548	541.3451745441885	82.59	3.0818	80.294	79.634	82.716	-2.2963					214	63	7	0	0	0	0.59259	1	4729	4729		32.812	6.0163	1	3973000	+		43894	16502	36289	36312	47327	47327					0.139651062508392
PRKLPLTIGYL	11	Unmodified	_PRKLPLTIGYL_					0	0	0			REV__tr|A0A553STY9|A0A553STY9_NIACIPTSbeta-glucosidetransportersubunitIIABCOS=NialliacirculansOX=1397GN=CEQ21_05960PE=4SV=1	REV__tr|A0A553STY9|A0A553STY9_NIACIPTSbeta-glucosidetransportersubunitIIABCOS=NialliacirculansOX=1397GN=CEQ21_05960PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	424.6045837402344	3	424.267574	1269.78089	2.1849	0.00092699	3.4621	0.0014688	5.647	0.0023958	424.26901414012116	62.593	1.0533	59.559	59.313	60.366	-3.0339					48	20	4	0	0	0	0.72477	1	2296	2296		18.531	0	1	93226	+		43895	31024	36290	36313	47328	47328					0.15679388287708207
PRKLRREL	8	Unmodified	_PRKLRREL_					0	0	0			REV__ENST00000466480.1_1_1:114448336-114454776:+|nuORF	REV__ENST00000466480.1_1_1:114448336-114454776:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	534.3426513671875	2	534.343449	1066.67235	1.9733	0.0010544	-1.9799	-0.0010579	-0.0065619	-3.5063E-06	534.3423036869325	64.763	1.4145	61.77	61.395	62.809	-2.9933					70	27	3	0	0	0	0.68714	2	2563	2563;2576		45.952	10.334	1	193540	+		43896	18410	36291	36314	47329;47330	47329					0.1416764182793031
PRKNLNVSF	9	Unmodified	_PRKNLNVSF_					0	0	0		ENSG00000168685|ENST00000303115|IL7R	ENSG00000168685|ENST00000303115|IL7R	ENSG00000168685|ENST00000303115|IL7R	MULTI-MSMS	OvCa9_classI_Rep2	2	537.8058471679688	2	537.806365	1073.59818	-0.73907	-0.00039747	0.57469	0.00030907	-0.16438	-8.8404E-05	537.8066238213836	64.565	1.7005	61.841	61.441	63.142	-2.7245					97	32	4	0	0	0	0.11171	1	4935	4935		94.006	6.2521	1	1245100			43897	6933	36292	36315	47331	47331					0.0643225394574074
PRKNTFER	8	Unmodified	_PRKNTFER_					0	0	0		ENST00000487330.1_1_9:74975472-74979818:-|nuORF	ENST00000487330.1_1_9:74975472-74979818:-|nuORF	ENST00000487330.1_1_9:74975472-74979818:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.2890014648438	2	524.28834	1046.56213	-1.581	-0.00082889	0.78746	0.00041286	-0.79351	-0.00041603	524.2887464140517	44.627	1.9606	41.589	41.156	43.117	-3.0385					101	37	5	0	0	0	0.73205	1	2216	2216		35.618	5.1146	1	2532700			43898	12642	36293	36316	47332	47332					0.04070796768883156
PRKPAGAAK	9	Unmodified	_PRKPAGAAK_					0	0	0		ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MULTI-MSMS	OvCa9_classI_Rep3	3	448.2770080566406	2	448.277244	894.539935	1.0889	0.00048813	-0.80337	-0.00036013	0.28553	0.000128	448.2767184820242	67.307	1.1511	64.42	64.187	65.338	-2.8873					44	22	3	0	0	0	0.67509	1	2846	2846		23.042	4.7181	1	85921			43899	3662	36294	36317	47333	47333					0.08844617091131113
PRKPEKWRLYL	11	Unmodified	_PRKPEKWRLYL_					0	0	0			REV__ENSG00000103064|ENST00000219343|SLC7A6	REV__ENSG00000103064|ENST00000219343|SLC7A6	MSMS	OvCa9_classI_Rep2	2	495.9583740234375	3	495.961144	1484.8616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	159.83	1	159.6	159.1	160.1	-0.22696								0	0	0	0.19474	1	16251	16251		14.086	3.4992	1		+		43900	17595	36295	36318	47334	47334					0.13856669330607474
PRKPITFVVLA	11	Unmodified	_PRKPITFVVLA_					0	0	0		ENSG00000127804|ENST00000263092|METTL16	ENSG00000127804|ENST00000263092|METTL16	ENSG00000127804|ENST00000263092|METTL16	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.9088439941406	3	414.264053	1239.77033	0.13276	5.4996E-05	0.047823	1.9812E-05	0.18058	7.4807E-05	414.26436367538673	42.279	0.21283	42.279	42.199	42.412	0					6	4	2	0	0	0	0.02596	1	2722	2722		17.167	3.6588	1	51216			43901	3846	36296	36319	47335	47335					0.1600340563327336
PRKRGPGG	8	Unmodified	_PRKRGPGG_					0	0	0			REV__nc|ENSG00000197381|P78563-6|ADARB1	REV__nc|ENSG00000197381|P78563-6|ADARB1	MULTI-MSMS	OvCa9_classI_Rep2	2	412.7456359863281	2	412.746111	823.477669	0.75276	0.0003107	-0.50806	-0.0002097	0.2447	0.000101	412.74581316945023	134.99	1.618	134.76	134.29	135.91	-0.22696					65	32	3	0	0	0	0.74679	2	13336	13336;13360		28.254	1.4582	1	284470	+		43902	22915	36297	36320	47336;47337	47336					0.05886890742817741
PRKRGPGG	8	Unmodified	_PRKRGPGG_					0	0	0			REV__nc|ENSG00000197381|P78563-6|ADARB1	REV__nc|ENSG00000197381|P78563-6|ADARB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	412.7461242675781	2	412.746111	823.477669	3.1505	0.0013004	-2.8121	-0.0011607	0.33847	0.0001397	412.74482870844463	135.72	2.2055	134.18	133.51	135.72	-1.5437					107	44	4	0	0	0	0.73417	5	13123	13123;13145;13157;13169;13181		21.702	1.2205	1	1010100	+		43903	22915	36297	36320	47338;47339;47340;47341;47342	47338					0.05886890742817741
PRKRGRLS	8	Unmodified	_PRKRGRLS_					0	0	0		ENST00000358738.3_1_14:64971326-64971620:+|nuORF	ENST00000358738.3_1_14:64971326-64971620:+|nuORF	ENST00000358738.3_1_14:64971326-64971620:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.2932434082031	2	485.306867	968.599181	0.0010532	5.1114E-07	2.8324	0.0013746	2.8335	0.0013751	485.3081034585361	105.47	1.0932	104.12	103.78	104.87	-1.3482					65	20	4	0	0	0	0.028476	1	7478	7478		25.45	7.1258	1	291650			43904	10742	36298	36321	47343	47343					0.11362513105336802
PRKRGRLS	8	Unmodified	_PRKRGRLS_					0	0	0		ENST00000358738.3_1_14:64971326-64971620:+|nuORF	ENST00000358738.3_1_14:64971326-64971620:+|nuORF	ENST00000358738.3_1_14:64971326-64971620:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	485.306867	968.599181	-0.53396	-0.00025914	3.3948	0.0016475	2.8609	0.0013884	485.3083835774826	104.52	1.1881	103.95	103.62	104.81	-0.57639	-0.13441	0.0001639	NaN	25.45	66	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	282780			43905	10742	36298	36321							0.11362513105336802
PRKSKLAVH	9	Unmodified	_PRKSKLAVH_					0	0	0		MYO6|p.R980Tfs*5|1|0.29|ENSG00000196586|chr6:75891292-75891293|-/A|frameshift_variant;nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6	MYO6|p.R980Tfs*5|1|0.29|ENSG00000196586|chr6:75891292-75891293|-/A|frameshift_variant	MYO6|p.R980Tfs*5|1|0.29|ENSG00000196586|chr6:75891292-75891293|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	518.323974609375	2	518.324725	1034.6349	-0.20131	-0.00010434	-0.59303	-0.00030738	-0.79433	-0.00041172	518.3244380054447	69.411	2.6973	66.791	66.416	69.113	-2.6203					144	52	4	0	0	0	0.55588	2	5495	5495;5517		37.159	5.2042	1	2532100			43906	8630	36299	36322	47344;47345	47344					0.11896550562323682
PRKSKLAVH	9	Unmodified	_PRKSKLAVH_					0	0	0		MYO6|p.R980Tfs*5|1|0.29|ENSG00000196586|chr6:75891292-75891293|-/A|frameshift_variant;nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6	MYO6|p.R980Tfs*5|1|0.29|ENSG00000196586|chr6:75891292-75891293|-/A|frameshift_variant	MYO6|p.R980Tfs*5|1|0.29|ENSG00000196586|chr6:75891292-75891293|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	518.3243408203125	2	518.324725	1034.6349	1.0131	0.00052512	-1.7305	-0.00089695	-0.71737	-0.00037183	518.3238379693353	69.479	3.4447	66.665	66.312	69.756	-2.8144					184	68	5	0	0	0	0.46377	3	3107	3107;3119;3151		45.952	8.7928	1	3734200			43907	8630	36299	36322	47346;47347;47348	47346					0.11896550562323682
PRKSKLAVH	9	Unmodified	_PRKSKLAVH_					0	0	0		MYO6|p.R980Tfs*5|1|0.29|ENSG00000196586|chr6:75891292-75891293|-/A|frameshift_variant;nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6	MYO6|p.R980Tfs*5|1|0.29|ENSG00000196586|chr6:75891292-75891293|-/A|frameshift_variant	MYO6|p.R980Tfs*5|1|0.29|ENSG00000196586|chr6:75891292-75891293|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.3258056640625	2	518.324725	1034.6349	-1.0284	-0.00053303	0.70556	0.00036571	-0.32281	-0.00016732	518.3250657043614	70.688	2.5247	67.207	66.836	69.361	-3.4812					145	51	4	0	0	0	0.55588	2	5360	5360;5384		37.159	2.9866	1	2922500			43908	8630	36299	36322	47349;47350	47349					0.11896550562323682
PRKSQRPW	8	Unmodified	_PRKSQRPW_					0	0	0		ENST00000327473.8_1_19:4655256-4655514:+|nuORF	ENST00000327473.8_1_19:4655256-4655514:+|nuORF	ENST00000327473.8_1_19:4655256-4655514:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.822509765625	2	527.798875	1053.5832	-1.5961	-0.00084244	-0.11982	-6.3242E-05	-1.716	-0.00090568	527.7986406935454	53.637	1.3292	50.389	49.854	51.183	-3.2474					33	25	2	0	0	0	0.028476	1	3364	3364		33.516	0	1	56396			43909	10415	36300	36323	47351	47351					0.05854806868410378
PRLAESSPFVE	11	Unmodified	_PRLAESSPFVE_					0	0	0			REV__ENSG00000125999|ENST00000253354|BPIFB1	REV__ENSG00000125999|ENST00000253354|BPIFB1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	615.3468017578125	2	616.319502	1230.62445	0.30386	0.00018728	0.16978	0.00010464	0.47364	0.00029191	616.3195805294305	83.715	0.82297	81.052	80.681	81.504	-2.6629					26	16	2	0	0	0	0.025528	1	7017	7017		21.686	2.5822	1	79172	+		43910	18765	36301	36324	47352	47352					0.0183647832659517
PRLAFCTPAQ	10	Unmodified	_PRLAFCTPAQ_					0	0	0		ENST00000446213.2_1_2:131593198-131593495:-|nuORF	ENST00000446213.2_1_2:131593198-131593495:-|nuORF	ENST00000446213.2_1_2:131593198-131593495:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.3077392578125	2	552.286951	1102.55935	-1.4585	-0.00080548	-0.61743	-0.000341	-2.0759	-0.0011465	552.2863602799843	48.849	0.93517	45.742	45.502	46.437	-3.1077					38	17	3	0	0	0	0.027028	1	2717	2717		31.53	7.0106	1	175870			43911	11987	36302	36325	47353	47353					0.012172053197218702
PRLAFCTPAQ	10	Unmodified	_PRLAFCTPAQ_					0	0	0		ENST00000446213.2_1_2:131593198-131593495:-|nuORF	ENST00000446213.2_1_2:131593198-131593495:-|nuORF	ENST00000446213.2_1_2:131593198-131593495:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	552.286951	1102.55935	-0.082296	-4.5451E-05	0.54016	0.00029832	0.45787	0.00025287	552.2871425353937	48.676	0.89409	45.916	45.629	46.523	-2.7603	0.086912	0.00025769	NaN	31.53	35	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44410			43912	11987	36302	36325							0.012172053197218702
PRLAPETSF	9	Unmodified	_PRLAPETSF_					0	0	0			REV__ENSG00000126243|ENST00000246529|LRFN3	REV__ENSG00000126243|ENST00000246529|LRFN3	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.803955078125	2	509.271824	1016.5291	-0.57806	-0.00029439	-0.13526	-6.8885E-05	-0.71332	-0.00036327	509.2716478353158	74.448	0.49434	72.038	71.796	72.29	-2.4106					13	9	2	0	0	0	0.027426	1	3720	3720		56.721	19.562	1	17886	+		43913	18777	36303	36326	47354	47354					0.021491699261900976
PRLFLDEWL	9	Unmodified	_PRLFLDEWL_					0	0	0		ENST00000570209.1_1_15:31127242-31129800:+|nuORF	ENST00000570209.1_1_15:31127242-31129800:+|nuORF	ENST00000570209.1_1_15:31127242-31129800:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	594.8240966796875	2	594.824224	1187.63389	0.18951	0.00011273	-4.3657	-0.0025968	-4.1762	-0.0024841	594.8214583497862	70.893	0.66788	70.893	70.681	71.349	0					38	16	4	0	0	0	0.48324	1	6828	6828		44.117	1.2525	1	1805900			43914	13891	36304	36327	47355	47355					0.04758291402731629
PRLFRWQRRRH	11	Unmodified	_PRLFRWQRRRH_					0	0	0			REV__ENST00000552421.5_1_14:75230214-75230343:+|nuORF	REV__ENST00000552421.5_1_14:75230214-75230343:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	535.8143310546875	3	536.646664	1606.91816	0.42666	0.00022896	-2.8278	-0.0015175	-2.4011	-0.0012885	536.645138529219	95.597	1.2942	93.769	93.429	94.724	-1.8286					62	24	5	0	0	0	0.026551	1	6338	6338		1.4188	1.0473	1	202970	+		43915	27496	36305	36328	47356	47356					0.1389815473046383
PRLFRWQRRRH	11	Unmodified	_PRLFRWQRRRH_					0	0	0			REV__ENST00000552421.5_1_14:75230214-75230343:+|nuORF	REV__ENST00000552421.5_1_14:75230214-75230343:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	536.646664	1606.91816	-1.2639	-0.00067826	-1.2161	-0.00065262	-2.48	-0.0013309	536.6459794414403	94.598	1.132	93.499	93.114	94.246	-1.0995	-0.1654	0.0009188	NaN	6.3209	62	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177780	+		43916	27496	36305	36328							0.1389815473046383
PRLFRWQRRRH	11	Unmodified	_PRLFRWQRRRH_					0	0	0			REV__ENST00000552421.5_1_14:75230214-75230343:+|nuORF	REV__ENST00000552421.5_1_14:75230214-75230343:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	536.646664	1606.91816	-1.017	-0.00054575	-1.4341	-0.0007696	-2.4511	-0.0013154	536.6458197230131	96.151	0.91391	93.725	93.457	94.371	-2.4256	0.060933	0.00056786	NaN	6.3209	52	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178430	+		43917	27496	36305	36328							0.1389815473046383
PRLGCHASPLL	11	Carbamidomethyl (C)	_PRLGC(Carbamidomethyl (C))HASPLL_	PRLGC(1)HASPLL		PRLGC(51)HASPLL		0	1	0			REV__ENST00000394169.5_1_17:38081462-38082082:-|nuORF	REV__ENST00000394169.5_1_17:38081462-38082082:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	610.8323364257812	2	610.832057	1219.64956	2.1729	0.0013273	-4.2793	-0.0026139	-2.1064	-0.0012867	610.8296936043263	118.22	0.79251	118.22	117.93	118.72	0					35	16	3	0	0	0	0.52842	1	13552	13552		51.193	10.62	1	349560	+		43918	25294	36306	36329	47357	47357	312				0.048522546481535755
PRLGDEEL	8	Unmodified	_PRLGDEEL_					0	0	0			REV__ENST00000293288.12_1_19:49464748-49464931:+|nuORF	REV__ENST00000293288.12_1_19:49464748-49464931:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.79876708984375	2	464.740357	927.46616	-1.39	-0.00064597	0.9054	0.00042077	-0.48457	-0.0002252	464.74079249088976	72.279	0.92293	68.822	68.27	69.193	-3.4563					29	18	3	0	0	0	0.028476	1	5516	5516		35.201	0	1	82463	+		43919	24169	36307	36330	47358	47358					-0.0004739586186133238
PRLGGPLLL	9	Unmodified	_PRLGGPLLL_					0	0	0			REV__ENST00000392341.5_1_17:80197025-80197367:+|nuORF	REV__ENST00000392341.5_1_17:80197025-80197367:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	468.3056945800781	2	468.30547	934.596387	-1.2276	-0.00057488	0.869	0.00040696	-0.35858	-0.00016792	468.30580149557557	101.8	2.1744	101.04	100.67	102.84	-0.76401					107	43	5	0	0	0	0.38529	1	9337	9337		53.351	3.3269	1	1285400	+		43920	25253	36308	36331	47359	47359					0.12647244927802603
PRLGGPLLL	9	Unmodified	_PRLGGPLLL_					0	0	0			REV__ENST00000392341.5_1_17:80197025-80197367:+|nuORF	REV__ENST00000392341.5_1_17:80197025-80197367:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	468.30633544921875	2	468.30547	934.596387	-0.11211	-5.25E-05	-0.42977	-0.00020127	-0.54188	-0.00025376	468.30521098510104	102.7	2.1959	101.18	100.63	102.83	-1.5211					138	41	5	0	0	0	0.29717	1	7092	7092		63.306	11.007	1	1655400	+		43921	25253	36308	36331	47360	47360					0.12647244927802603
PRLGGPLLL	9	Unmodified	_PRLGGPLLL_					0	0	0			REV__ENST00000392341.5_1_17:80197025-80197367:+|nuORF	REV__ENST00000392341.5_1_17:80197025-80197367:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	468.30670166015625	2	468.30547	934.596387	-0.10884	-5.097E-05	-0.26151	-0.00012247	-0.37035	-0.00017344	468.3052924042457	103.42	2.4994	101.22	100.52	103.02	-2.1981					124	47	5	0	0	0	0.29717	3	9344	9344;9356;9368		63.306	11.007	1	1560600	+		43922	25253	36308	36331	47361;47362;47363	47361					0.12647244927802603
PRLGQRLPSI	10	Unmodified	_PRLGQRLPSI_					0	0	0		ENSG00000283071|ENST00000634353|LBHD2	ENSG00000283071|ENST00000634353|LBHD2	ENSG00000283071|ENST00000634353|LBHD2	MULTI-MSMS	OvCa9_classI_Rep2	2	568.8460083007812	2	568.848564	1135.68258	-0.94065	-0.00053509	-2.591	-0.0014739	-3.5317	-0.002009	568.8468987403617	122.03	1.7301	121.81	120.93	122.66	-0.21803					88	34	3	0	0	0	0.6349	1	11812	11812		37.812	1.3648	1	269790			43923	9610	36309	36332	47364	47364					0.12016204762517191
PRLIEEDFP	9	Unmodified	_PRLIEEDFP_					0	0	0		ENSG00000137745|ENST00000260302|MMP13	ENSG00000137745|ENST00000260302|MMP13	ENSG00000137745|ENST00000260302|MMP13	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.30712890625	2	558.290214	1114.56587	0.29365	0.00016394	-4.226	-0.0023594	-3.9324	-0.0021954	558.2874756943802	79.761	0.48017	77.009	76.797	77.277	-2.7514					15	9	2	0	0	0	0.027462	1	6507	6507		38.806	8.3025	1	32713			43924	4610	36310	36333	47365	47365					0.01317421752082737
PRLIEINPR	9	Unmodified	_PRLIEINPR_					0	0	0		nc|ENSG00000172508|A5YM72-4|CARNS1;ENSG00000172508|ENST00000687366|CARNS1;nc|ENSG00000172508|A5YM72-3|CARNS1;nc|ENSG00000172508|A5YM72|CARNS1;nc|ENSG00000172508|A5YM72-2|CARNS1	nc|ENSG00000172508|A5YM72-4|CARNS1	nc|ENSG00000172508|A5YM72-4|CARNS1	MULTI-MSMS	OvCa99_classI_Rep5	1	555.33740234375	2	554.33529	1106.65603	-0.52851	-0.00029297	0.23086	0.00012797	-0.29765	-0.000165	554.3355157523787	42.329	0.98526	42.329	41.897	42.883	0					77	22	6	0	0	0	0.27546	1	2690	2690		65.803	4.8312	1	2383200			43925	7302	36311	36334	47366	47366					0.10696515871177326
PRLKGLRLE	9	Unmodified	_PRLKGLRLE_					0	0	0		ENSG00000154143|ENST00000284288|PANX3	ENSG00000154143|ENST00000284288|PANX3	ENSG00000154143|ENST00000284288|PANX3	MULTI-MSMS	OvCa9_classI_Rep2	2	541.3455810546875	2	541.345658	1080.67676	-0.18719	-0.00010134	-1.1969	-0.00064794	-1.3841	-0.00074928	541.345222203672	81.441	1.5457	79.792	79.415	80.961	-1.6485					147	29	7	0	0	0	0.48324	2	6904	6904;6933		44.117	3.3386	1	3232100			43926	5714	36312	36335	47367;47368	47367					0.13965106250816461
PRLKGLRLE	9	Unmodified	_PRLKGLRLE_					0	0	0		ENSG00000154143|ENST00000284288|PANX3	ENSG00000154143|ENST00000284288|PANX3	ENSG00000154143|ENST00000284288|PANX3	MULTI-MSMS	OvCa9_classI_Rep3	3	541.3465576171875	2	541.345658	1080.67676	-0.52558	-0.00028452	-1.1101	-0.00060096	-1.6357	-0.00088548	541.3451745441885	82.59	3.0818	80.294	79.634	82.716	-2.2963					214	63	7	0	0	0	0.38529	5	4679	4650;4673;4679;4697;4703		53.351	5.3632	1	3973000			43927	5714	36312	36335	47369;47370;47371;47372;47373	47371					0.13965106250816461
PRLKGLRLE	9	Unmodified	_PRLKGLRLE_					0	0	0		ENSG00000154143|ENST00000284288|PANX3	ENSG00000154143|ENST00000284288|PANX3	ENSG00000154143|ENST00000284288|PANX3	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.3467407226562	2	541.345658	1080.67676	-0.94096	-0.00050939	-0.28271	-0.00015304	-1.2237	-0.00066243	541.3456613983815	82.909	2.3512	80.226	79.684	82.036	-2.683					196	48	7	0	0	0	0.48324	1	6902	6902		44.117	0	1	3004400			43928	5714	36312	36335	47374	47374					0.13965106250816461
PRLKKPVN	8	Unmodified	_PRLKKPVN_					0	0	0			REV__nc|ENSG00000182329|Q0VF49|KIAA2012	REV__nc|ENSG00000182329|Q0VF49|KIAA2012	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.792236328125	2	476.308544	950.602535	0.16084	7.6612E-05	-0.50945	-0.00024266	-0.34861	-0.00016604	476.30815383657574	79.876	0.59373	78.181	77.975	78.568	-1.6951					22	11	3	0	0	0	0.028476	1	6767	6767		19.36	0	1	26267	+		43929	22283	36313	36336	47375	47375					0.12525763159317194
PRLLDFALFI	10	Unmodified	_PRLLDFALFI_					0	0	0			REV__tr|A0A553SR97|A0A553SR97_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00685PE=3SV=1	REV__tr|A0A553SR97|A0A553SR97_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00685PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	402.2399597167969	3	402.241137	1203.70158	1.3935	0.00056051	-4.4422	-0.0017868	-3.0487	-0.0012263	402.23921500569236	71.259	2.0878	68.657	68.229	70.317	-2.6023					93	41	4	0	0	0	0.6898	1	3321	3321		31.634	1.3165	1	386150	+		43930	30707	36314	36337	47376	47376					0.10787741333547274
PRLLHGTLIM	10	Unmodified	_PRLLHGTLIM_					0	0	0		nc|ENSG00000127054|Q5TA45-4|INTS11;nc|ENSG00000127054|Q5TA45-3|INTS11;ENSG00000127054|ENST00000435064|INTS11;nc|ENSG00000127054|Q5TA45-5|INTS11;ENST00000485710.5_1_1:1247522-1249186:-|nuORF;ENST00000470030.6_1_1:1247241-1248711:-|nuORF;ACAP3-CPSF3L|1|fusion;nc|ENSG00000127054|Q5TA45-2|INTS11	nc|ENSG00000127054|Q5TA45-4|INTS11	nc|ENSG00000127054|Q5TA45-4|INTS11	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8450317382812	2	575.841894	1149.66923	-0.33973	-0.00019563	3.0801	0.0017736	2.7403	0.001578	575.8433458482052	142.38	3.7668	140.93	139.05	142.82	-1.4532					179	72	3	0	0	0	0.7759	1	13973	13973		21.96	0	1	165140			43931	3816	36315	36338	47377	47377					0.10038630658914371
PRLLQGHD	8	Unmodified	_PRLLQGHD_					0	0	0		ENST00000453996.6_1_16:88779262-88780065:+|nuORF	ENST00000453996.6_1_16:88779262-88780065:+|nuORF	ENST00000453996.6_1_16:88779262-88780065:+|nuORF	MSMS	OvCa99_classI_Rep5	1	468.2572937011719	2	468.256508	934.498464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.2	1	46.2	45.7	46.7	0								0	0	0	0.30129	1	3246	3246		33.516	1.5607	1				43932	12079	36316	36339	47378	47378					0.0285943633180068
PRLLSPLIE	9	Unmodified	_PRLLSPLIE_					0	0	0			REV__ENST00000551176.1_1_12:56482614-56482743:+|nuORF	REV__ENST00000551176.1_1_12:56482614-56482743:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.84228515625	2	519.321317	1036.62808	-0.48192	-0.00025027	-0.75891	-0.00039412	-1.2408	-0.00064439	519.3206132002656	105.31	1.4054	103.29	103.05	104.46	-2.0161					59	27	3	0	0	0	0.027462	1	9526	9526		42.396	1.618	1	344330	+		43933	27484	36317	36340	47379	47379					0.11123192891091094
PRLLSPLIE	9	Unmodified	_PRLLSPLIE_					0	0	0			REV__ENST00000551176.1_1_12:56482614-56482743:+|nuORF	REV__ENST00000551176.1_1_12:56482614-56482743:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	519.321317	1036.62808	-0.44675	-0.00023201	-0.50914	-0.0002644	-0.95589	-0.00049641	519.3208055393527	103.94	1.2374	103.37	103.08	104.32	-0.57639	0.063832	0.0004564	NaN	42.396	55	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	283080	+		43934	27484	36317	36340							0.11123192891091094
PRLLSPLIE	9	Unmodified	_PRLLSPLIE_					0	0	0			REV__ENST00000551176.1_1_12:56482614-56482743:+|nuORF	REV__ENST00000551176.1_1_12:56482614-56482743:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	519.321317	1036.62808	0.66961	0.00034774	-1.617	-0.00083974	-0.94739	-0.000492	519.320157444101	104.69	1.1949	103.25	102.97	104.16	-1.4347	-0.052635	-0.00069428	NaN	42.396	58	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	403150	+		43935	27484	36317	36340							0.11123192891091094
PRLPALRLG	9	Unmodified	_PRLPALRLG_					0	0	0			REV__ENSG00000148848|ENST00000448723|ADAM12	REV__ENSG00000148848|ENST00000448723|ADAM12	MULTI-MSMS	OvCa9_classI_Rep3	3	496.8216552734375	2	496.821818	991.629084	0.21016	0.00010441	-0.44989	-0.00022352	-0.23973	-0.0001191	496.82152545075974	71.168	1.942	68.465	68.025	69.967	-2.7032					97	38	4	0	0	0	0.61208	1	3332	3332		30.504	0	1	703360	+		43936	20134	36318	36341	47380	47380					0.13293452050641008
PRLPFPRSLR	10	Unmodified	_PRLPFPRSLR_					0	0	0		ENST00000325954.8_2_12:120972163-120972457:+|nuORF	ENST00000325954.8_2_12:120972163-120972457:+|nuORF	ENST00000325954.8_2_12:120972163-120972457:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	413.5879211425781	3	413.58753	1237.74076	1.5895	0.00065738	-1.5442	-0.00063865	0.045295	1.8734E-05	413.5867931980936	68.355	2.099	65.541	64.862	66.961	-2.8144					118	41	5	0	0	0	0.71173	2	2963	2942;2963		27.644	5.0823	1	366370			43937	10404	36319	36342	47381;47382	47382					0.13139886407770973
PRLPGKPSSL	10	Unmodified	_PRLPGKPSSL_					0	0	0		ENST00000399298.7_1_10:63212760-63213120:-|nuORF	ENST00000399298.7_1_10:63212760-63213120:-|nuORF	ENST00000399298.7_1_10:63212760-63213120:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.3401489257812	2	526.316566	1050.61858	-1.7299	-0.00091048	0.91833	0.00048333	-0.81159	-0.00042715	526.3168853110346	84.888	1.591	83.342	82.797	84.388	-1.5462					104	31	4	0	0	0	0.02663	1	7450	7450		60.118	12.461	1	306200			43938	11384	36320	36343	47383	47383					0.09529424605557324
PRLPIHSHTKG	11	Unmodified	_PRLPIHSHTKG_					0	0	0			REV__nc|ENSG00000214300|A6NKU9-2|SPDYE3	REV__nc|ENSG00000214300|A6NKU9-2|SPDYE3	MULTI-MSMS	OvCa9_classI_Rep4_	4	621.854736328125	2	621.856921	1241.69929	0.85384	0.00053097	-4.1606	-0.0025873	-3.3068	-0.0020564	621.8542891257139	35.713	1.0986	32.864	32.54	33.639	-2.849					53	21	3	0	0	0	0.72458	1	1180	1180		17.468	14.75	1	190550	+		43939	23287	36321	36344	47384	47384					0.08810705648443218
PRLPLFTSVRP	11	Unmodified	_PRLPLFTSVRP_					0	0	0			REV__ENSG00000102738|ENST00000323563|MRPS31	REV__ENSG00000102738|ENST00000323563|MRPS31	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8818969726562	2	641.885147	1281.75574	-2.5182	-0.0016164	-1.9587	-0.0012572	-4.4768	-0.0028736	641.8839546837315	150.47	2.9704	149.03	147.78	150.75	-1.4344					235	64	4	0	0	0	0.7046	1	14966	14966		28.081	3.8787	1	344900	+		43940	17568	36322	36345	47385	47385					0.1261333348509197
PRLPLIVLL	9	Unmodified	_PRLPLIVLL_					0	0	0			REV__ENST00000252934.9_1_22:46067795-46085660:+|nuORF	REV__ENST00000252934.9_1_22:46067795-46085660:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	517.359619140625	2	517.360245	1032.70594	-0.63272	-0.00032734	0.17774	9.1954E-05	-0.45498	-0.00023539	517.3601946717101	136.63	2.1947	135.53	135.15	137.35	-1.1023					115	44	4	0	0	0	0.53957	2	11164	11164;11176		38.806	0	1	468020	+		43941	23872	36323	36346	47386;47387	47386					0.1908925054710835
PRLPLIVLL	9	Unmodified	_PRLPLIVLL_					0	0	0			REV__ENST00000252934.9_1_22:46067795-46085660:+|nuORF	REV__ENST00000252934.9_1_22:46067795-46085660:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.359375	2	517.360245	1032.70594	1.8735	0.00096925	-2.5299	-0.0013089	-0.65645	-0.00033962	517.3588470360384	137.04	2.3917	135.5	135.08	137.47	-1.5437					132	51	5	0	0	0	0.46377	1	13384	13384		45.952	7.1458	1	756000	+		43942	23872	36323	36346	47388	47388					0.1908925054710835
PRLPQRVW	8	Unmodified	_PRLPQRVW_					0	0	0		nc|ENSG00000105672|O00321-2|ETV2	nc|ENSG00000105672|O00321-2|ETV2	nc|ENSG00000105672|O00321-2|ETV2	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.2977905273438	2	526.311618	1050.60868	1.5882	0.00083587	-3.3985	-0.0017887	-1.8103	-0.0009528	526.3097466844896	89.34	1.2377	87.973	87.675	88.913	-1.3676					52	24	3	0	0	0	0.028476	1	7903	7903		19.36	0	1	125770			43943	14940	36324	36347	47389	47389					0.08540281390855853
PRLQSNIQYIT	11	Unmodified	_PRLQSNIQYIT_					0	0	0		ENST00000461017.1_1_7:66262359-66272860:+|nuORF;ENSG00000154710|ENST00000284957|RABGEF1;nc|ENSG00000154710|Q9UJ41-4|RABGEF1;nc|ENSG00000154710|Q9UJ41-3|RABGEF1	ENST00000461017.1_1_7:66262359-66272860:+|nuORF	ENST00000461017.1_1_7:66262359-66272860:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	444.26953125	3	444.91386	1331.71975	0.60378	0.00026863	1.1345	0.00050477	1.7383	0.0007734	444.91409493949925	71.288	1.4927	68.686	68.178	69.67	-2.6023					63	29	3	0	0	0	0.02558	1	3270	3270		49.466	17.832	1	84001			43944	5748	36325	36348	47390	47390					0.06715831517612969
PRLRPRTCP	9	Unmodified	_PRLRPRTCP_					0	0	0		nc|ENSG00000288675|I0J062|PANO1	nc|ENSG00000288675|I0J062|PANO1	nc|ENSG00000288675|I0J062|PANO1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.8433837890625	2	548.313835	1094.61312	-1.4889	-0.00081636	1.0032	0.00055008	-0.48562	-0.00026627	548.3149313573041	73.001	0.92124	69.605	68.96	69.881	-3.3961					49	18	4	0	0	0	0.027462	1	5593	5593		14.137	0	1	177190			43945	15388	36326	36349	47391	47391					0.06959422542081484
PRLSLRRR	8	Unmodified	_PRLSLRRR_					0	0	0		ENST00000468918.5_1_3:119396099-119396264:-|nuORF	ENST00000468918.5_1_3:119396099-119396264:-|nuORF	ENST00000468918.5_1_3:119396099-119396264:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.8275146484375	2	527.341241	1052.66793	-0.64828	-0.00034187	2.2237	0.0011726	1.5754	0.00083077	527.3426939176536	55.232	0.41756	55.232	55.023	55.44	0					22	9	3	0	0	0	0.028476	1	4506	4506		35.618	11.416	1	224080			43946	12338	36327	36350	47392	47392					0.14370177404998685
PRLSPPPLA	9	Unmodified	_PRLSPPPLA_					0	0	0			REV__ENSG00000100263|ENST00000216085|RHBDD3	REV__ENSG00000100263|ENST00000216085|RHBDD3	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.2887268066406	2	474.287277	946.560001	2.9498	0.001399	4.2892	0.0020343	7.239	0.0034334	474.28922077273074	129.53	5.9099	128.07	125.62	131.53	-1.4565					195	118	2	0	0	0	0.65476	1	12612	12612		25.45	3.7478	1	37993	+		43947	17389	36328	36351	47393	47393					0.08458368031074315
PRLSQGLQAL	10	Unmodified	_PRLSQGLQAL_					0	0	0		ENST00000598519.1_1_19:55987989-55992892:+|nuORF	ENST00000598519.1_1_19:55987989-55992892:+|nuORF	ENST00000598519.1_1_19:55987989-55992892:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	541.8201293945312	2	541.819473	1081.62439	-0.2025	-0.00010972	-0.86937	-0.00047104	-1.0719	-0.00058076	541.8190481905314	75.406	2.4622	72.995	72.631	75.093	-2.4106					113	47	5	0	0	0	0.47142	2	3822	3822;3836		58.23	2.673	1	2066600			43948	14196	36329	36352	47394;47395	47394					0.08684523117221943
PRLSRKRALSI	11	Unmodified	_PRLSRKRALSI_					0	0	0		ENSG00000074047|ENST00000361492|GLI2;nc|ENSG00000074047|P10070|GLI2	ENSG00000074047|ENST00000361492|GLI2	ENSG00000074047|ENST00000361492|GLI2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	432.9164123535156	3	432.945606	1295.81499	-0.24198	-0.00010476	3.4016	0.0014727	3.1596	0.0013679	433.2814734335916	55.335	0.25591	52.04	51.854	52.11	-3.2944					6	4	2	0	0	0	0.026259	1	3464	3464		20.315	11.516	1	5829.8			43949	1505	36330	36353	47396	47396					0.17891229499309702
PRLSSVRPKP	10	Unmodified	_PRLSSVRPKP_					0	0	0			REV__ENSG00000198173|ENST00000358047|FAM47C	REV__ENSG00000198173|ENST00000358047|FAM47C	MULTI-MSMS	OvCa9_classI_Rep2	2	568.8463745117188	2	568.848564	1135.68258	-0.94065	-0.00053509	-2.591	-0.0014739	-3.5317	-0.002009	568.8468987403617	122.03	1.7301	121.81	120.93	122.66	-0.21803					88	34	3	0	0	0	0.53885	1	11856	11856		49.442	7.0454	1	269790	+		43950	22995	36331	36354	47397	47397					0.12016204762517191
PRLSTARL	8	Unmodified	_PRLSTARL_					0	0	0			REV__ENST00000352879.8_1_2:241526300-241537498:+|nuORF	REV__ENST00000352879.8_1_2:241526300-241537498:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	457.2826843261719	2	457.282526	912.550499	0.47425	0.00021687	-0.49128	-0.00022466	-0.017036	-7.7904E-06	457.2821592199895	58.808	2.4649	56.028	55.184	57.649	-2.7801					125	47	5	0	0	0	0.73205	1	4254	4254		35.618	1.4457	1	550990	+		43951	24728	36332	36355	47398	47398					0.09072599745559273
PRLTRKQDQT	10	Unmodified	_PRLTRKQDQT_					0	0	0			REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1	REV__nc|ENSG00000164694|Q4ZHG4-2|FNDC1	MULTI-MSMS	OvCa9_classI_Rep3	3	621.8510131835938	2	621.849293	1241.68403	1.1955	0.00074343	1.6172	0.0010057	2.8127	0.0017491	621.8502830657769	71.677	2.3262	69.075	68.633	70.959	-2.6023					129	46	4	0	0	0	0.5675	1	3375	3375		45.972	8.1607	1	908440	+		43952	21013	36333	36356	47399	47399					0.07285794060612716
PRLVDLDW	8	Unmodified	_PRLVDLDW_					0	0	0		nc|ENSG00000110442|Q9P000-2|COMMD9;ENSG00000110442|ENST00000263401|COMMD9	nc|ENSG00000110442|Q9P000-2|COMMD9	nc|ENSG00000110442|Q9P000-2|COMMD9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.3327941894531	2	507.274367	1012.53418	-0.23135	-0.00011736	-3.8947	-0.0019757	-4.1261	-0.0020931	507.2721458304254	57.325	0.91743	53.98	53.628	54.546	-3.3449					43	17	3	0	0	0	0.028476	1	3722	3722		30.504	21.033	1	237890			43953	2777	36334	36357	47400	47400					0.028414737887942465
PRLVGPCPLA	10	Unmodified	_PRLVGPCPLA_					0	0	0			REV__ENST00000285679.10_1_21:17102373-17102469:+|nuORF	REV__ENST00000285679.10_1_21:17102373-17102469:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	511.79656982421875	2	511.794412	1021.57427	-0.62141	-0.00031803	4.1436	0.0021207	3.5222	0.0018026	511.7964198016226	39.51	1.1416	36.8	36.459	37.601	-2.7097					55	22	3	0	0	0	0.69986	1	1931	1931		30.504	5.0535	1	203800	+		43954	24133	36335	36358	47401	47401					0.0643469718771712
PRLVPASVSR	10	Unmodified	_PRLVPASVSR_					0	0	0		ENST00000496722.1_1_22:21975961-21976048:+|nuORF	ENST00000496722.1_1_22:21975961-21976048:+|nuORF	ENST00000496722.1_1_22:21975961-21976048:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.3455200195312	2	541.327465	1080.64038	-0.19736	-0.00010684	2.6612	0.0014406	2.4639	0.0013338	541.3302592710983	81.402	0.6665	79.753	79.564	80.231	-1.6485					17	12	3	0	0	0	0.026551	1	6927	6927		69.628	23.676	1	40473			43955	12794	36336	36359	47402	47402					0.10328229354126961
PRLVPGSPVI	10	Unmodified	_PRLVPGSPVI_					0	0	0		nc|ENSG00000138835|P49796-8|RGS3;nc|ENSG00000138835|P49796-7|RGS3	nc|ENSG00000138835|P49796-8|RGS3	nc|ENSG00000138835|P49796-8|RGS3	MULTI-MSMS	OvCa9_classI_Rep3	3	517.8191528320312	2	517.821484	1033.62842	-3.1809	-0.0016471	-0.94149	-0.00048752	-4.1224	-0.0021347	517.8208401920543	146.89	1.3501	145.93	145.54	146.89	-0.95947					60	26	3	0	0	0	0.69986	2	12331	12331;12361		30.504	3.0457	1	132640			43956	15049	36337	36360	47403;47404	47403					0.1129461261095912
PRLYLYKDS	9	Unmodified	_PRLYLYKDS_					0	0	0			REV__ENST00000046640.7_1_17:3564587-3564764:+|nuORF	REV__ENST00000046640.7_1_17:3564587-3564764:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	578.8108520507812	2	577.813856	1153.61316	-0.81199	-0.00046918	-2.5302	-0.001462	-3.3422	-0.0019312	577.8122262592198	62.593	0.92477	59.136	58.913	59.838	-3.4577					24	18	2	0	0	0	0.027462	1	4343	4343		11.511	0	1	328540	+		43957	23675	36338	36361	47405	47405					0.04249701023081798
PRMEARAII	9	Unmodified	_PRMEARAII_					0	0	0		sp|P06726|PP71_HCMVAProteinpp71OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL82PE=1SV=2;sp|F5HBC6|PP71_HCMVMProteinpp71OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL82PE=3SV=1	sp|P06726|PP71_HCMVAProteinpp71OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL82PE=1SV=2	sp|P06726|PP71_HCMVAProteinpp71OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL82PE=1SV=2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.822509765625	2	528.802768	1055.59098	-1.7132	-0.00090594	-1.0849	-0.00057369	-2.7981	-0.0014796	529.304112808199	54.087	1.3812	50.84	50.161	51.542	-3.2474					35	26	2	0	0	0	0.027462	1	3364	3364		23.042	3.0457	1	50776			43958	32853	36339	36362	47406	47406					0.06541198073682608
PRMGELIY	8	Unmodified	_PRMGELIY_					0	0	0			REV__ENST00000395246.5_1_5:130727872-130728007:+|nuORF	REV__ENST00000395246.5_1_5:130727872-130728007:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	490.2994079589844	2	489.757495	977.500437	-1.1264	-0.00055164	-1.8642	-0.000913	-2.9905	-0.0014646	489.7564137640884	34.263	1.2366	31.554	31.267	32.503	-2.7097					35	24	2	0	0	0	0.028476	1	1273	1273		30.504	0	1	34846	+		43959	25311	36340	36363	47407	47407					0.010787290254029358
PRNHVQVV	8	Unmodified	_PRNHVQVV_					0	0	0			REV__ENSG00000168282|ENST00000305386|MGAT2	REV__ENSG00000168282|ENST00000305386|MGAT2	MULTI-MSMS	OvCa9_classI_Rep2	2	474.7722473144531	2	474.772326	947.530098	-2.2434	-0.0010651	2.3114	0.0010974	0.067932	3.2252E-05	474.77329814512956	37.51	1.38	34.8	34.287	35.667	-2.7097					69	27	4	0	0	0	0.62934	2	1673	1673;1684		57.811	13.743	1	277560	+		43960	21359	36341	36364	47408;47409	47408					0.05423429085760745
PRNHVQVV	8	Unmodified	_PRNHVQVV_					0	0	0			REV__ENSG00000168282|ENST00000305386|MGAT2	REV__ENSG00000168282|ENST00000305386|MGAT2	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.77215576171875	2	474.772326	947.530098	1.4458	0.0006864	-1.8304	-0.00086903	-0.38467	-0.00018263	474.7714054184023	37.259	2.3363	34.367	33.695	36.031	-2.8925					116	46	4	0	0	0	0.73626	1	1345	1345		33.516	1.5607	1	1197600	+		43961	21359	36341	36364	47410	47410					0.05423429085760745
PRNLNVSFQ	9	Unmodified	_PRNLNVSFQ_					0	0	0		nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.8054809570312	2	537.788173	1073.56179	-0.55432	-0.0002981	1.279	0.00068784	0.7247	0.00038974	537.7887905800396	64.83	1.0457	62.105	61.545	62.591	-2.7246					59	19	4	0	0	0	0.027462	1	4925	4925		42.396	5.237	1	174890			43962	825	36342	36365	47411	47411					0.027953770490512397
PRNNTWPNRDQ	11	Unmodified	_PRNNTWPNRDQ_					0	0	0		ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	ENSG00000166398|ENST00000299505|GARRE1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	467.25775146484375	3	466.560479	1396.65961	-0.89704	-0.00041852	1.7352	0.00080958	0.83817	0.00039106	466.5613569624125	54.134	0.51149	50.886	50.722	51.234	-3.2474					12	9	2	0	0	0	0.02595	1	3347	3347		33.039	15.206	1	22666			43963	6673	36343	36366	47412	47412					-0.022854660929169768
PRPAPGPAPF	10	Unmodified	_PRPAPGPAPF_					0	0	0		ENSG00000105464|ENST00000263269|GRIN2D;RHPN2-GRIN2D|1|fusion	ENSG00000105464|ENST00000263269|GRIN2D;RHPN2-GRIN2D|1|fusion	RHPN2-GRIN2D|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.7779846191406	2	503.777077	1005.5396	-0.53642	-0.00027024	3.9292	0.0019795	3.3928	0.0017092	503.7788775374196	22.106	2.3664	20.768	19.646	22.013	-1.3386					123	57	3	0	0	0	0.62668	2	290	290;337		38.806	5.3132	1	168480			43964	32786;2461	36344	36367	47413;47414	47413					0.03705197371277791
PRPAPHRPQL	10	Unmodified	_PRPAPHRPQL_					0	0	0			REV__ENSG00000128165|ENST00000395737|ADM2	REV__ENSG00000128165|ENST00000395737|ADM2	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.8377685546875	2	584.838531	1167.66251	0.36689	0.00021457	-3.926	-0.0022961	-3.5591	-0.0020815	584.8363932127572	86.632	1.5906	84.005	83.663	85.253	-2.6269					87	31	4	0	0	0	0.46756	1	7353	7353		58.782	2.0609	1	899460	+		43965	18842	36345	36368	47415	47415					0.08538453822552583
PRPARSALS	9	Unmodified	_PRPARSALS_					0	0	0		ENST00000495879.1_1_3:61547567-61547879:+|nuORF	ENST00000495879.1_1_3:61547567-61547879:+|nuORF	ENST00000495879.1_1_3:61547567-61547879:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	477.77716064453125	2	477.777608	953.540663	0.30924	0.00014775	-0.9987	-0.00047716	-0.68946	-0.00032941	477.7771636832581	43.542	2.3879	40.832	40.509	42.897	-2.7097					104	47	3	0	0	0	0.59259	1	2404	2404		32.812	1.2826	1	3363800			43966	12782	36346	36369	47416	47416					0.0620341174017085
PRPAYKVVRR	10	Unmodified	_PRPAYKVVRR_					0	0	0		ENSG00000143850|ENST00000272203|PLEKHA6	ENSG00000143850|ENST00000272203|PLEKHA6	ENSG00000143850|ENST00000272203|PLEKHA6	MULTI-MSMS	OvCa9_classI_Rep4_	4	621.384033203125	2	621.383106	1240.75166	0.63091	0.00039204	-0.58959	-0.00036636	0.041318	2.5674E-05	621.3825974566482	32.776	1.7235	30.08	29.569	31.293	-2.6954					81	36	3	0	0	0	0.74773	1	789	789		34.173	2.6427	1	73112			43967	5100	36347	36370	47417	47417					0.14091288782060474
PRPCPPAP	8	Unmodified	_PRPCPPAP_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400;REV__EP400|p.P1343Qfs*17|1|0.1|ENSG00000183495|chr12:132017637-132017637|C/-|frameshift_variant	REV__nc|ENSG00000183495|Q96L91-4|EP400	MULTI-MSMS	OvCa99_classI_Rep5	1	417.7178649902344	2	417.718173	833.421793	2.6452	0.001105	-4.026	-0.0016817	-1.3807	-0.00057675	417.71632504075836	120.31	2.3096	120.31	120.05	122.36	0					128	52	3	0	0	0	0.69415	5	13827	13806;13827;13929;13955;14003		44.531	5.5096	1	6297000	+		43968	22365;28107	36348	36371	47418;47419;47420;47421;47422	47419					-0.0015807848903932609
PRPCPPAP	8	Unmodified	_PRPCPPAP_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400;REV__EP400|p.P1343Qfs*17|1|0.1|ENSG00000183495|chr12:132017637-132017637|C/-|frameshift_variant	REV__nc|ENSG00000183495|Q96L91-4|EP400	MULTI-MSMS	OvCa99_classI_Rep5	1	417.7184143066406	2	417.718173	833.421793	1.7448	0.00072883	-3.4359	-0.0014352	-1.6911	-0.0007064	417.7166426496585	144.78	1.5205	144.78	143.91	145.43	0					51	31	2	0	0	0	0.59103	1	16929	16929		65.897	28.869	1	78574	+		43969	22365;28107	36348	36371	47423	47423					-0.0015807848903932609
PRPCPPAP	8	Unmodified	_PRPCPPAP_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400;REV__EP400|p.P1343Qfs*17|1|0.1|ENSG00000183495|chr12:132017637-132017637|C/-|frameshift_variant	REV__nc|ENSG00000183495|Q96L91-4|EP400	MULTI-MSMS	OvCa99_classI_Rep5	1	417.71746826171875	2	417.718173	833.421793	1.5603	0.00065178	-3.4728	-0.0014507	-1.9125	-0.00079888	417.7165732909185	155.81	4.0147	155.81	153.69	157.7	0					162	79	3	0	0	0	0.68312	3	18326	18326;18352;18403		46.766	13.273	1	421790	+		43970	22365;28107	36348	36371	47424;47425;47426	47424					-0.0015807848903932609
PRPCPPAP	8	Unmodified	_PRPCPPAP_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400;REV__EP400|p.P1343Qfs*17|1|0.1|ENSG00000183495|chr12:132017637-132017637|C/-|frameshift_variant	REV__nc|ENSG00000183495|Q96L91-4|EP400	MULTI-MSMS	OvCa9_classI_Rep4_	4	417.71734619140625	2	417.718173	833.421793	-1.4249	-0.00059521	-2.818	-0.0011771	-4.2429	-0.0017723	417.71682894919303	72.477	2.986	69.08	68.716	71.702	-3.3961					112	61	3	0	0	0	0.72922	1	5596	5596		37.028	3.5355	1	629690	+		43971	22365;28107	36348	36371	47427	47427					-0.0015807848903932609
PRPEKSGLR	9	Unmodified	_PRPEKSGLR_					0	0	0			REV__ENSG00000180357|ENST00000326648|ZNF609	REV__ENSG00000180357|ENST00000326648|ZNF609	MULTI-MSMS	OvCa9_classI_Rep2	2	520.303955078125	2	520.30399	1038.59343	0.87613	0.00045586	-1.227	-0.00063843	-0.35091	-0.00018258	520.3032319005173	43.248	1.2895	40.538	40.213	41.502	-2.7097					78	25	5	0	0	0	0.31747	1	2391	2391		60.972	7.6205	1	428250	+		43972	22170	36349	36372	47428	47428					0.0756736980297319
PRPKQRPKGP	10	Unmodified	_PRPKQRPKGP_					0	0	0		chr11:46382748-46382972|358|21.68|0.39|5.79|+|0|MDK,None|1	chr11:46382748-46382972|358|21.68|0.39|5.79|+|0|MDK,None|1	chr11:46382748-46382972|358|21.68|0.39|5.79|+|0|MDK,None|1	MULTI-SECPEP	OvCa9_classI_Rep3	3	580.8308715820312	2	580.854181	1159.69381	-1.7624	-0.0010237	-2.6062	-0.0015138	-4.3686	-0.0025375	580.8524658561047	76.244	0.25993	73.873	73.773	74.033	-2.3715					7	4	2	0	0	0	0.027056	1	3925	3925		27.882	14.923	1	11535			43973	292	36350	36373	47429	47429					0.12035026856665354
PRPKRLQGLL	10	Unmodified	_PRPKRLQGLL_					0	0	0			REV__ENSG00000111331|ENST00000228928|OAS3	REV__ENSG00000111331|ENST00000228928|OAS3	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.320556640625	2	589.380032	1176.74551	1.914	0.0011281	0.021683	1.2779E-05	1.9357	0.0011409	589.3802184472165	128.82	0.79347	128.82	128.37	129.17	0					27	16	3	0	0	0	0.027056	1	14911	14911		20.947	0	1	240860	+		43974	18027	36351	36374	47430	47430					0.16420770550553243
PRPLLLRQL	9	Unmodified	_PRPLLLRQL_					0	0	0			REV__ENST00000379103.7_1_17:26206329-26206470:-|nuORF	REV__ENST00000379103.7_1_17:26206329-26206470:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	553.809326171875	2	553.36385	1104.71315	0.17131	9.4799E-05	-0.81897	-0.00045319	-0.64765	-0.00035839	553.3633761345675	83.706	0.6669	82.107	81.921	82.588	-1.5989					17	12	2	0	0	0	0.027462	1	7219	7219		30.504	2.6214	1	15750	+		43975	25152	36352	36375	47431	47431					0.16497983147542072
PRPLRALLG	9	Unmodified	_PRPLRALLG_					0	0	0			REV__ENST00000471864.1_1_9:38621862-38622117:+|nuORF	REV__ENST00000471864.1_1_9:38621862-38622117:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	496.8214416503906	2	496.821818	991.629084	0.21016	0.00010441	-0.44989	-0.00022352	-0.23973	-0.0001191	496.82152545075974	71.168	1.942	68.465	68.025	69.967	-2.7032					97	38	4	0	0	0	0.25214	2	3320	3295;3320		68.485	10.673	1	703360	+		43976	26296	36353	36376	47432;47433	47433					0.13293452050641008
PRPLSMGLVS	10	Unmodified	_PRPLSMGLVS_					0	0	0		ENST00000568980.1_1_15:34782181-34782250:-|nuORF	ENST00000568980.1_1_15:34782181-34782250:-|nuORF	ENST00000568980.1_1_15:34782181-34782250:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.2777709960938	2	528.797152	1055.57975	0.95792	0.00050655	2.5499	0.0013484	3.5078	0.0018549	528.7982332736188	29.092	0.33583	26.382	26.216	26.552	-2.7097					10	6	2	0	0	0	0.027145	1	653	653		31.53	4.7337	1	11229			43977	13878	36354	36377	47434	47434					0.05418375979525081
PRPPTCRFRV	10	Unmodified	_PRPPTCRFRV_					0	0	0			REV__ENST00000447980.1_1_21:34602744-34614213:+|nuORF	REV__ENST00000447980.1_1_21:34602744-34614213:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	410.227294921875	3	410.229237	1227.66588	-0.59157	-0.00024268	-2.6182	-0.001074	-3.2097	-0.0013167	410.22807386978417	38.111	1.8292	35.402	35.124	36.953	-2.7097					84	36	4	0	0	0	0.7759	1	1775	1775		15.333	0	1	218460	+		43978	25925	36355	36378	47435	47435					0.06115380604887832
PRPQVPKIL	9	Unmodified	_PRPQVPKIL_					0	0	0		ENSG00000167612|ENST00000301190|ANKRD33	ENSG00000167612|ENST00000301190|ANKRD33	ENSG00000167612|ENST00000301190|ANKRD33	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.853759765625	2	524.337301	1046.66005	-0.24845	-0.00013027	-1.3227	-0.00069356	-1.5712	-0.00082383	524.3363946222174	98.191	1.1121	95.813	95.216	96.328	-2.3786					32	21	2	0	0	0	0.027462	1	8693	8693		29.15	15.374	1	36450			43979	6813	36356	36379	47436	47436					0.13858605364907817
PRPQVPKIL	9	Unmodified	_PRPQVPKIL_					0	0	0		ENSG00000167612|ENST00000301190|ANKRD33	ENSG00000167612|ENST00000301190|ANKRD33	ENSG00000167612|ENST00000301190|ANKRD33	MULTI-MATCH	OvCa9_classI_Rep2	2		2	524.337301	1046.66005	0.26307	0.00013794	-2.0714	-0.0010861	-1.8083	-0.00094815	524.3359986000121	97.063	0.73846	96.105	95.873	96.612	-0.95857	0.21331	-0.0014957	NaN	29.15	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21825			43980	6813	36356	36379							0.13858605364907817
PRPQVPKIL	9	Unmodified	_PRPQVPKIL_					0	0	0		ENSG00000167612|ENST00000301190|ANKRD33	ENSG00000167612|ENST00000301190|ANKRD33	ENSG00000167612|ENST00000301190|ANKRD33	MULTI-MATCH	OvCa9_classI_Rep3	3		2	524.337301	1046.66005	-0.90488	-0.00047446	0.22218	0.0001165	-0.68269	-0.00035796	524.3371667220587	97.516	0.95109	95.757	95.26	96.211	-1.7595	-0.13466	0.00090951	NaN	29.15	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46332			43981	6813	36356	36379							0.13858605364907817
PRPRCPRQ	8	Unmodified	_PRPRCPRQ_					0	0	0			REV__ENSG00000168014|ENST00000334126|C2CD3	REV__ENSG00000168014|ENST00000334126|C2CD3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.32305908203125	2	505.277252	1008.53995	-0.77646	-0.00039233	-0.37361	-0.00018878	-1.1501	-0.0005811	505.2767506817896	117.25	0.78459	115.88	115.51	116.29	-1.3645					21	14	2	0	0	0	0.028476	1	10937	10937		24.203	1.1603	1	21115	+		43982	21334	36357	36380	47437	47437					0.03602293819483293
PRPRCPRQ	8	Unmodified	_PRPRCPRQ_					0	0	0			REV__ENSG00000168014|ENST00000334126|C2CD3	REV__ENSG00000168014|ENST00000334126|C2CD3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	505.277252	1008.53995	-1.238	-0.00062554	0.55933	0.00028261	-0.67868	-0.00034292	505.27743530160745	116.85	0.79152	115.81	115.29	116.08	-1.0414	-0.035029	0.00029227	NaN	17.365	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13952	+		43983	21334	36357	36380							0.03602293819483293
PRPRDVRSI	9	Unmodified	_PRPRDVRSI_					0	0	0		nc|ENSG00000266094|Q8WWW0-3|RASSF5;ENSG00000266094|ENST00000579436|RASSF5	nc|ENSG00000266094|Q8WWW0-3|RASSF5	nc|ENSG00000266094|Q8WWW0-3|RASSF5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.2954711914062	2	548.322714	1094.63087	0.52438	0.00028753	3.076	0.0016866	3.6004	0.0019742	548.3248421386547	34.143	0.24871	31.355	31.15	31.399	-2.7881					7	4	2	0	0	0	0.02744	1	973	973		52.937	6.9645	1	17881			43984	9527	36358	36381	47438	47438					0.08734461068593191
PRPRLKSA	8	Unmodified	_PRPRLKSA_					0	0	0			REV__ENST00000528416.5_1_11:65119589-65119910:+|nuORF	REV__ENST00000528416.5_1_11:65119589-65119910:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.7904357910156	2	462.790518	923.566484	0.27277	0.00012624	-0.18065	-8.3604E-05	0.092117	4.2631E-05	462.7903124837854	33.565	1.4882	30.777	30.259	31.747	-2.7881					68	29	3	0	0	0	0.75915	1	946	946		20.482	0	1	162630	+		43985	27170	36359	36382	47439	47439					0.1016430598245961
PRPRRTRQST	10	Unmodified	_PRPRRTRQST_					0	0	0			REV__ENSG00000154175|ENST00000471714|ABI3BP	REV__ENSG00000154175|ENST00000471714|ABI3BP	MULTI-SECPEP	OvCa9_classI_Rep3	3	418.92828369140625	3	418.909443	1253.7065	0.71842	0.00030095	-3.9458	-0.0016529	-3.2274	-0.001352	418.9074136963203	103.38	0.26352	101.95	101.76	102.03	-1.4347					5	4	2	0	0	0	0.027187	1	7150	7150		31.634	11.604	1	7572.2	+		43986	20365	36360	36383	47440	47440					0.08979438248866245
PRPRSGLLQGL	11	Unmodified	_PRPRSGLLQGL_					0	0	0			REV__ENST00000482806.5_1_7:150774217-150777853:-|nuORF	REV__ENST00000482806.5_1_7:150774217-150777853:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	597.3590698242188	2	597.359296	1192.70404	-5.052	-0.0030179	4.0389	0.0024127	-1.0131	-0.00060517	597.3615454958483	157.14	0.96848	155.97	155.65	156.62	-1.1707					64	22	4	0	0	0	0.72466	1	13591	13591		19.997	5.1319	1	132000	+		43987	21033	36361	36384	47441	47441					0.11539589791232174
PRPSKRGLVPS	11	Unmodified	_PRPSKRGLVPS_					0	0	0			REV__ENST00000474290.1_1_15:44069338-44069488:+|nuORF	REV__ENST00000474290.1_1_15:44069338-44069488:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	597.3589477539062	2	597.359296	1192.70404	-5.052	-0.0030179	4.0389	0.0024127	-1.0131	-0.00060517	597.3615454958483	157.14	0.96848	155.97	155.65	156.62	-1.1707					64	22	4	0	0	0	0.71789	1	13540	13540		23.523	0.48021	1	132000	+		43988	26345	36362	36385	47442	47442					0.11539589791232174
PRPSSPVR	8	Unmodified	_PRPSSPVR_					0	0	0			REV__ENST00000397389.6_1_12:123459369-123459579:+|nuORF	REV__ENST00000397389.6_1_12:123459369-123459579:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	448.2587585449219	2	448.259051	894.503549	-2.462	-0.0011036	2.7472	0.0012315	0.28525	0.00012786	448.2601337945915	142.71	1.2357	141.7	141.38	142.62	-1.0102					68	24	5	0	0	0	0.75723	1	11856	11856		23.042	0	1	329850	+		43989	25352	36363	36386	47443	47443					0.05207740194430244
PRPTLTGPIIR	11	Unmodified	_PRPTLTGPIIR_					0	0	0			REV__ENST00000264716.8_1_2:28616261-28626983:+|nuORF	REV__ENST00000264716.8_1_2:28616261-28626983:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	407.58642578125	3	407.587307	1219.74009	0.44599	0.00018178	-3.014	-0.0012285	-2.568	-0.0010467	407.5861538857253	33.945	1.1824	33.945	33.728	34.911	0					71	24	4	0	0	0	0.6986	1	1591	1591		30.139	0.58839	1	3802100	+		43990	24022	36364	36387	47444	47444					0.1390104696806702
PRPVERVV	8	Unmodified	_PRPVERVV_					0	0	0			REV__ESPL1|p.G1980R|1|0.05|ENSG00000135476|chr12:53292599-53292599|G/A|missense_variant	REV__ESPL1|p.G1980R|1|0.05|ENSG00000135476|chr12:53292599-53292599|G/A|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	476.2906494140625	2	476.290351	950.566149	0.035326	1.6826E-05	-0.03016	-1.4365E-05	0.005166	2.4605E-06	476.29019996490365	58.511	0.65183	58.511	58.28	58.932	0					34	15	3	0	0	0	0.61436	1	4970	4970		60.972	15.02	1	4606300	+		43991	28119	36365	36388	47445	47445					0.08888886262616325
PRPVVNQTVK	10	Unmodified	_PRPVVNQTVK_					0	0	0		nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;nc|ENSG00000176225|Q86VV8-4|RTTN;RTTN|p.K1324Nfs*13|1|0.04|ENSG00000176225|chr18:70092736-70092737|-/A|frameshift_variant;nc|ENSG00000176225|Q86VV8-2|RTTN;ENST00000581583.1_1_18:67834153-67872894:-|nuORF;RTTN|p.D511Wfs*23|1|0.04|ENSG00000176225|chr18:70169014-70169015|-/AT|frameshift_variant	nc|ENSG00000176225|Q86VV8-3|RTTN;RTTN|p.D511Wfs*23|1|0.04|ENSG00000176225|chr18:70169014-70169015|-/AT|frameshift_variant	nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	569.3051147460938	2	569.340572	1136.66659	-0.76628	-0.00043627	0.63156	0.00035957	-0.13472	-7.6701E-05	569.3408175483626	43.656	1.0673	40.648	40.326	41.393	-3.0074					46	20	3	0	0	0	0.02706	1	2103	2103		37.812	4.9991	1	111530			43992	7592;32794	36366	36389	47446	47446					0.10372498525612173
PRPWSVLVLSK	11	Unmodified	_PRPWSVLVLSK_					0	0	0		ENST00000267101.7_1_12:56487575-56487638:+|nuORF	ENST00000267101.7_1_12:56487575-56487638:+|nuORF	ENST00000267101.7_1_12:56487575-56487638:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	427.9295959472656	3	427.92744	1280.76049	1.7119	0.00073257	3.8354	0.0016413	5.5473	0.0023739	427.9290217090034	65.493	1.4717	62.547	62.198	63.67	-2.9459					92	28	4	0	0	0	0.70142	1	2640	2640		25.892	0	1	349590			43993	9963	36367	36390	47447	47447					0.131342176278622
PRQDLPCL	8	Unmodified	_PRQDLPCL_					0	0	0			REV__nc|ENSG00000179603|O00222-2|GRM8	REV__nc|ENSG00000179603|O00222-2|GRM8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.2564392089844	2	471.247295	940.480036	0.40004	0.00018852	-0.82672	-0.00038959	-0.42668	-0.00020107	471.24659009343304	52.064	0.50495	48.864	48.749	49.254	-3.2005					16	9	2	0	0	0	0.028476	1	3088	3088		28.254	0	1	122000	+		43994	22131	36368	36391	47448	47448					0.0074155836557565635
PRQEGEPGPGP	11	Unmodified	_PRQEGEPGPGP_					0	0	0			REV__ENSG00000140323|ENST00000267889|DISP2	REV__ENSG00000140323|ENST00000267889|DISP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.8268432617188	2	560.772719	1119.53089	0.49534	0.00027777	-1.5857	-0.00088922	-1.0904	-0.00061144	560.7717353388744	48.504	0.46409	45.396	45.192	45.657	-3.1077					12	8	2	0	0	0	0.025315	1	2695	2695		45.972	3.108	1	16522	+		43995	19662	36369	36392	47449	47449					-0.024098210558577193
PRQGLAKLQ	9	Unmodified	_PRQGLAKLQ_					0	0	0			REV__ENSG00000112539|ENST00000230301|C6orf118	REV__ENSG00000112539|ENST00000230301|C6orf118	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.3295593261719	2	505.808908	1009.60326	0.1477	7.4708E-05	-1.1021	-0.00055744	-0.95438	-0.00048273	505.8084144622487	71.046	1.1512	68.505	68.195	69.346	-2.5416					35	21	3	0	0	0	0.027462	1	5785	5785		45.952	11.779	1	18884	+		43996	18105	36370	36393	47450	47450					0.098845578083683
PRQGLAKLQ	9	Unmodified	_PRQGLAKLQ_					0	0	0			REV__ENSG00000112539|ENST00000230301|C6orf118	REV__ENSG00000112539|ENST00000230301|C6orf118	MULTI-MATCH	OvCa9_classI_Rep3	3		2	505.808908	1009.60326	-0.12189	-6.1653E-05	0.095056	4.808E-05	-0.026833	-1.3573E-05	505.80875007999185	71.093	0.8503	68.373	68.163	69.013	-2.7196	-0.18268	0.00032001	NaN	45.952	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23652	+		43997	18105	36370	36393							0.098845578083683
PRQGLAKLQ	9	Unmodified	_PRQGLAKLQ_					0	0	0			REV__ENSG00000112539|ENST00000230301|C6orf118	REV__ENSG00000112539|ENST00000230301|C6orf118	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	505.808908	1009.60326	-1.5206	-0.00076915	0.54955	0.00027797	-0.97107	-0.00049118	505.80917222693716	72.246	0.53795	68.789	68.46	68.998	-3.4563	0.23359	0.00077979	NaN	45.952	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24015	+		43998	18105	36370	36393							0.098845578083683
PRQGTHTRQH	10	Unmodified	_PRQGTHTRQH_					0	0	0			REV__ENSG00000198185|ENST00000692313|ZNF334	REV__ENSG00000198185|ENST00000692313|ZNF334	MULTI-MSMS	OvCa9_classI_Rep4_	4	609.3186645507812	2	609.315951	1216.61735	0.12677	7.7244E-05	1.6978	0.0010345	1.8246	0.0011117	609.3168780071545	66.565	1.9139	63.075	62.612	64.526	-3.4902					83	38	4	0	0	0	0.55109	1	4846	4846		47.96	1.9873	1	950700	+		43999	22998	36371	36394	47451	47451					0.017706032893556767
PRQGWPCV	8	Unmodified	_PRQGWPCV_					0	0	0			REV__ENST00000487186.5_1_1:2132487-2144100:-|nuORF	REV__ENST00000487186.5_1_1:2132487-2144100:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.2564392089844	2	471.734354	941.454156	0.54869	0.00025884	2.329	0.0010987	2.8777	0.0013575	471.73573526270116	51.844	0.80392	48.67	48.224	49.028	-3.1734					28	15	4	0	0	0	0.028476	1	3088	3088		46.766	25.064	1	46425	+		44000	26598	36372	36395	47452	47452					-0.018912910860422016
PRQKKQGM	8	Unmodified	_PRQKKQGM_					0	0	0			REV__ENST00000475280.1_1_16:128308-129705:+|nuORF	REV__ENST00000475280.1_1_16:128308-129705:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.29095458984375	2	486.774011	971.533469	-0.14778	-7.1934E-05	0.85034	0.00041392	0.70257	0.00034199	486.7742188011611	46.06	1.1958	43.351	42.897	44.093	-2.7097					51	23	3	0	0	0	0.028476	1	2775	2775		33.516	6.8227	1	125180	+		44001	17598	36373	36396	47453	47453					0.04656355868121409
PRQLNLPPF	9	Unmodified	_PRQLNLPPF_					0	0	0			REV__nc|ENSG00000131149|Q14687-2|GSE1	REV__nc|ENSG00000131149|Q14687-2|GSE1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.3465576171875	2	541.311284	1080.60801	-0.99044	-0.00053613	-0.98468	-0.00053302	-1.9751	-0.0010692	541.8118166601105	83.055	0.24393	80.372	80.173	80.417	-2.6829					7	4	2	0	0	0	0.027426	1	6890	6890		63.306	17.334	1	9426.9	+		44002	19000	36374	36397	47454	47454					0.07093441951110435
PRQLSLSTF	9	Unmodified	_PRQLSLSTF_					0	0	0		ENST00000289371.10_1_2:99999292-100006235:+|nuORF	ENST00000289371.10_1_2:99999292-100006235:+|nuORF	ENST00000289371.10_1_2:99999292-100006235:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.2692260742188	2	524.792924	1047.57129	-1.1733	-0.00061573	0.90116	0.00047292	-0.27213	-0.00014281	524.7929934136661	69.488	0.82941	66.006	65.468	66.297	-3.4812					25	16	2	0	0	0	0.027343	1	5203	5203		79.451	7.5735	1	23835			44003	10086	36375	36398	47455	47455					0.049411453345555856
PRQLSQAL	8	Unmodified	_PRQLSQAL_					0	0	0		ENSG00000250423|ENST00000691062|KIAA1210;nc|ENSG00000250423|Q9ULL0|KIAA1210	ENSG00000250423|ENST00000691062|KIAA1210	ENSG00000250423|ENST00000691062|KIAA1210	MULTI-MSMS	OvCa9_classI_Rep2	2	456.7664794921875	2	456.766709	911.518865	-1.0943	-0.00049982	1.1247	0.00051372	0.03042	1.3895E-05	456.76710390256716	37.466	1.7255	34.756	34.386	36.112	-2.7097					82	34	4	0	0	0	0.32444	5	1683	1667;1671;1683;1689;1714		102.77	12.404	1	799280			44004	9419	36376	36399	47456;47457;47458;47459;47460	47458					0.05956606991605895
PRQLSQAL	8	Unmodified	_PRQLSQAL_					0	0	0		ENSG00000250423|ENST00000691062|KIAA1210;nc|ENSG00000250423|Q9ULL0|KIAA1210	ENSG00000250423|ENST00000691062|KIAA1210	ENSG00000250423|ENST00000691062|KIAA1210	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.7673645019531	2	456.766709	911.518865	0.94223	0.00043038	-1.2537	-0.00057266	-0.31149	-0.00014228	456.7661570731372	37.409	3.2302	34.517	33.894	37.124	-2.8925					138	64	4	0	0	0	0.25402	6	1399	1363;1375;1399;1423;1448;1475		115.46	14.206	1	3176200			44005	9419	36376	36399	47461;47462;47463;47464;47465;47466	47463					0.05956606991605895
PRQPHRPDP	9	Unmodified	_PRQPHRPDP_					0	0	0		ENSG00000182551|ENST00000327435|ADI1	ENSG00000182551|ENST00000327435|ADI1	ENSG00000182551|ENST00000327435|ADI1	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.8179931640625	2	550.291414	1098.56827	2.6971	0.0014842	2.8352	0.0015602	5.5323	0.0030444	550.292889439933	89.548	0.32816	89.548	89.352	89.681	0					11	7	2	0	0	0	0.027462	1	9557	9557		23.042	0	1	324400			44006	8007	36377	36400	47467	47467					0.022933150004064373
PRQRAPLL	8	Unmodified	_PRQRAPLL_					0	0	0			REV__ENST00000466569.1_1_13:96285564-96294263:-|nuORF	REV__ENST00000466569.1_1_13:96285564-96294263:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	475.7984619140625	2	475.798343	949.582134	-1.1416	-0.00054318	1.0631	0.00050583	-0.078494	-3.7347E-05	475.7987527158406	55.46	1.1933	52.646	52.022	53.215	-2.8139					74	23	4	0	0	0	0.74679	1	3834	3834		28.254	0	1	547610	+		44007	26187	36378	36401	47468	47468					0.10532592499521343
PRQRLLVL	8	Unmodified	_PRQRLLVL_					0	0	0		nc|ENSG00000250120|Q9Y5I2-3|PCDHA10;ENSG00000250120|ENST00000307360|PCDHA10	nc|ENSG00000250120|Q9Y5I2-3|PCDHA10;REV__nc|ENSG00000140470|Q8TE56-2|ADAMTS17	nc|ENSG00000250120|Q9Y5I2-3|PCDHA10	MULTI-MSMS	OvCa9_classI_Rep2	2	497.82904052734375	2	497.829643	993.644734	1.6522	0.0008225	-2.095	-0.0010429	-0.44279	-0.00022044	497.8285287048733	88.973	2.1743	87.605	87.231	89.406	-1.3676					112	43	4	0	0	0	0.73288	1	7847	7847		35.201	4.6971	1	825450			44008	9416;19678	36379	36402	47469	47469					0.14765738567689368
PRQRLLVL	8	Unmodified	_PRQRLLVL_					0	0	0		nc|ENSG00000250120|Q9Y5I2-3|PCDHA10;ENSG00000250120|ENST00000307360|PCDHA10	nc|ENSG00000250120|Q9Y5I2-3|PCDHA10;REV__nc|ENSG00000140470|Q8TE56-2|ADAMTS17	nc|ENSG00000250120|Q9Y5I2-3|PCDHA10	MULTI-MSMS	OvCa9_classI_Rep3	3	497.8307189941406	2	497.829643	993.644734	-0.82413	-0.00041027	0.44661	0.00022234	-0.37752	-0.00018794	497.829829623416	90.268	2.2343	88.187	87.798	90.033	-2.0805					128	43	4	0	0	0	0.65582	1	5592	5592		52.299	4.3836	1	1075500			44009	9416;19678	36379	36402	47470	47470					0.14765738567689368
PRQRRVPV	8	Unmodified	_PRQRRVPV_					0	0	0			REV__ENSG00000145217|ENST00000398516|SLC26A1	REV__ENSG00000145217|ENST00000398516|SLC26A1	MULTI-SECPEP	OvCa9_classI_Rep2	2	504.7895812988281	2	504.314692	1006.61483	-1.5669	-0.00079023	3.922	0.0019779	2.355	0.0011877	504.3165663141578	54.336	0.84695	51.522	51.175	52.022	-2.8139					25	16	2	0	0	0	0.028476	1	3769	3769		3.9852	0	1	23910	+		44010	19955	36380	36403	47471	47471					0.11178799622371116
PRQSLIAIIS	10	Unmodified	_PRQSLIAIIS_					0	0	0			REV__ENSG00000112818|ENST00000230588|MEP1A	REV__ENSG00000112818|ENST00000230588|MEP1A	MULTI-SECPEP	OvCa9_classI_Rep2	2	548.7883911132812	2	549.337498	1096.66044	-2.1259	-0.0011678	1.4417	0.00079196	-0.68423	-0.00037587	549.3382685866256	35.985	0.5449	33.275	33.102	33.647	-2.7097					19	10	2	0	0	0	0.026994	1	1509	1509		25.574	2.0514	1	24282	+		44011	18120	36381	36404	47472	47472					0.11597980294095578
PRQTKIAP	8	Unmodified	_PRQTKIAP_					0	0	0			REV__ENSG00000204086|ENST00000373040|RPA4	REV__ENSG00000204086|ENST00000373040|RPA4	MULTI-MSMS	OvCa9_classI_Rep2	2	455.7774963378906	2	455.777077	909.5396	0.44756	0.00020399	-0.79005	-0.00036009	-0.34249	-0.0001561	455.77664816232084	39.294	1.4879	36.584	36.31	37.798	-2.7097					84	29	4	0	0	0	0.62474	1	1951	1951		58.782	5.4305	1	978610	+		44012	23124	36382	36405	47473	47473					0.08121197371258404
PRQTLTVLIKD	11	Unmodified	_PRQTLTVLIKD_					0	0	0		nc|ENSG00000240184|Q9UN70-2|PCDHGC3;ENSG00000240184|ENST00000308177|PCDHGC3	nc|ENSG00000240184|Q9UN70-2|PCDHGC3	nc|ENSG00000240184|Q9UN70-2|PCDHGC3	MULTI-SECPEP	OvCa9_classI_Rep2	2	641.8834228515625	2	642.387719	1282.76089	-5.4037	-0.0034713	0.40884	0.00026263	-4.9948	-0.0032086	642.3876841307678	156.79	0.68057	156.56	156.41	157.09	-0.22696					20	15	2	0	0	0	0.026342	1	15951	15951		17.468	2.6031	1	10926			44013	9336	36383	36406	47474	47474					0.1308159255706869
PRQTNYIR	8	Unmodified	_PRQTNYIR_					0	0	0		ENSG00000186970|ENST00000334067|KRTAP15-1	ENSG00000186970|ENST00000334067|KRTAP15-1	ENSG00000186970|ENST00000334067|KRTAP15-1	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.2893676757812	2	524.28834	1046.56213	-1.581	-0.00082889	0.78746	0.00041286	-0.79351	-0.00041603	524.2887464140517	44.627	1.9606	41.589	41.156	43.117	-3.0385					101	37	5	0	0	0	0.71267	1	2239	2239		40.778	0	1	2532700			44014	8378	36384	36407	47475	47475					0.04070796768883156
PRQVRNPPK	9	Unmodified	_PRQVRNPPK_					0	0	0		nc|ENSG00000131023|O95835-2|LATS1;ENST00000542747.5_1_6:149997344-150023094:-|nuORF;ENSG00000131023|ENST00000543571|LATS1;LATS1|p.L78Cfs*54|1|0.64|ENSG00000131023|chr6:149701894-149701894|A/-|frameshift_variant	nc|ENSG00000131023|O95835-2|LATS1	nc|ENSG00000131023|O95835-2|LATS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.3096313476562	2	546.325257	1090.63596	-0.15092	-8.245E-05	-2.8424	-0.0015529	-2.9933	-0.0016353	546.3237145072027	51.313	0.21289	51.313	51.248	51.461	0					5	4	2	0	0	0	0.027462	1	3964	3964		23.042	10.083	1	97060			44015	4038	36385	36408	47476	47476					0.09426764931231446
PRRAADLLD	9	Unmodified	_PRRAADLLD_					0	0	0		ENST00000493544.1_1_2:242066341-242066392:-|nuORF	ENST00000493544.1_1_2:242066341-242066392:-|nuORF	ENST00000493544.1_1_2:242066341-242066392:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.7875366210938	2	513.788173	1025.56179	-0.3471	-0.00017834	-0.55861	-0.00028701	-0.90571	-0.00046534	513.7878714786193	39.389	2.2851	36.463	35.948	38.233	-2.9264					123	44	5	0	0	0	0.50149	1	1645	1645		42.396	0.96952	1	2914100			44016	12738	36386	36409	47477	47477					0.05003377049024493
PRRCHRHRLKL	11	Unmodified	_PRRCHRHRLKL_					0	0	0			REV__ENST00000529984.5_1_1:45805925-45806045:-|nuORF	REV__ENST00000529984.5_1_1:45805925-45806045:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	490.2994079589844	3	491.293234	1470.85787	-0.53188	-0.00026131	-1.0649	-0.00052318	-1.5968	-0.00078449	491.2926391128763	33.558	0.7425	30.848	30.672	31.415	-2.7097					26	14	3	0	0	0	0.026461	1	1273	1273		5.4129	0	1	50671	+		44017	27198	36387	36410	47478	47478					0.14127721075760746
PRRDDGDRKK	10	Unmodified	_PRRDDGDRKK_					0	0	0			REV__ENST00000474032.1_1_22:38082399-38084247:+|nuORF	REV__ENST00000474032.1_1_22:38082399-38084247:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.90850830078125	3	414.89357	1241.65888	0.14557	6.0398E-05	2.2128	0.00091809	2.3584	0.00097848	414.8946558189161	42.431	0.55333	42.431	42.156	42.709	0					28	12	4	0	0	0	0.027089	1	2753	2753		25.126	0	1	532650	+		44018	23619	36388	36411	47479	47479					0.04771739258035268
PRREEEPRGH	10	Unmodified	_PRREEEPRGH_					0	0	0			REV__ENST00000506502.2_1_5:145583270-145598550:+|nuORF	REV__ENST00000506502.2_1_5:145583270-145598550:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	421.2402038574219	3	421.549803	1261.62758	-1.2964	-0.00054648	1.7618	0.00074267	0.4654	0.00019619	421.88363391647306	66.27	0.14545	62.78	62.708	62.853	-3.4902					4	2	2	0	0	0	0.027118	1	4803	4803		18.531	0	1	5931.3	+		44019	26888	36389	36412	47480	47480					0.007231662239291836
PRREPLPPRR	10	Unmodified	_PRREPLPPRR_					0	0	0		ENSG00000170748|ENST00000306904|RBMXL2	ENSG00000170748|ENST00000306904|RBMXL2	ENSG00000170748|ENST00000306904|RBMXL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	424.91168212890625	3	425.258184	1272.75272	-0.90385	-0.00038437	-2.8395	-0.0012075	-3.7433	-0.0015919	425.2569065839034	65.982	0.67966	62.497	62.325	63.005	-3.4854					17	13	2	0	0	0	0.026734	1	4777	4777		58.63	11.402	1	36541			44020	7131	36390	36413	47481	47481					0.12725503150954864
PRREVCEL	8	Unmodified	_PRREVCEL_					0	0	0		ENSG00000242252|ENST00000368272|BGLAP;ENST00000490491.5_2_1:156203516-156212950:+|nuORF	ENSG00000242252|ENST00000368272|BGLAP	ENSG00000242252|ENST00000368272|BGLAP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.82623291015625	2	501.263476	1000.5124	-0.69489	-0.00034832	-1.6823	-0.00084328	-2.3772	-0.0011916	501.76472702988707	62.57	0.44479	59.113	58.815	59.259	-3.4577					12	8	2	0	0	0	0.028476	1	4334	4334		45.952	10.751	1	35342			44021	9362	36391	36414	47482	47482					0.012163457685801404
PRRFLYVI	8	Unmodified	_PRRFLYVI_					0	0	0			REV__PCDHA13|p.S280L|1|0.14|ENSG00000239389|chr5:140883107-140883107|C/T|missense_variant	REV__PCDHA13|p.S280L|1|0.14|ENSG00000239389|chr5:140883107-140883107|C/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	531.8434448242188	2	532.324194	1062.63383	-0.18201	-9.689E-05	-0.043711	-2.3268E-05	-0.22572	-0.00012016	532.3239744127161	88.01	1.4013	85.879	85.493	86.895	-2.1309					67	27	3	0	0	0	0.028476	1	5281	5281		42.474	0	1	183240	+		44022	29282	36392	36415	47483	47483					0.1050233619341725
PRRGKDGSQG	10	Unmodified	_PRRGKDGSQG_					0	0	0			REV__ENST00000502420.1_1_5:177027181-177031484:+|nuORF	REV__ENST00000502420.1_1_5:177027181-177031484:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	529.2777709960938	2	529.278503	1056.54245	0.99243	0.00052527	-1.0648	-0.00056359	-0.072391	-3.8315E-05	529.2777207922776	28.873	0.72992	26.164	25.952	26.682	-2.7097					30	15	3	0	0	0	0.64697	1	653	653		36.447	2.9312	1	73554	+		44023	23672	36393	36416	47484	47484					0.016444207581344017
PRRGMGAGDG	10	Unmodified	_PRRGMGAGDG_					0	0	0			REV__ENST00000581193.5_1_18:3262441-3262750:+|nuORF	REV__ENST00000581193.5_1_18:3262441-3262750:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.2387390136719	2	487.23525	972.455947	-0.17531	-8.5417E-05	-0.35815	-0.0001745	-0.53346	-0.00025992	487.23444110954927	51.231	0.42673	51.231	51.078	51.504	0					11	9	2	0	0	0	0.026688	1	3966	3966		32.812	10.853	1	66001	+		44024	27824	36394	36417	47485	47485					-0.03138282068073295
PRRGSKGASQ	10	Unmodified	_PRRGSKGASQ_					0	0	0			REV__ENSG00000145246|ENST00000273859|ATP10D	REV__ENSG00000145246|ENST00000273859|ATP10D	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.2901000976562	2	522.288871	1042.56319	0.46976	0.00024535	2.9502	0.0015408	3.4199	0.0017862	522.2903512048665	35.195	1.2016	32.346	31.987	33.189	-2.849					57	23	3	0	0	0	0.39172	1	1125	1125		69.628	2.134	1	177480	+		44025	19957	36395	36418	47486	47486					0.043610111378029615
PRRGSTGPRP	10	Unmodified	_PRRGSTGPRP_					0	0	0			REV__nc|ENSG00000090006|Q8N2S1|LTBP4	REV__nc|ENSG00000090006|Q8N2S1|LTBP4	MULTI-MSMS	OvCa9_classI_Rep2	2	540.8047485351562	2	540.804688	1079.59482	-2.4915	-0.0013474	2.9764	0.0016096	0.48483	0.0002622	540.8058905637274	34.869	1.1922	32.159	31.91	33.102	-2.7097					80	23	5	0	0	0	0.74374	1	1361	1361		25.574	4.6271	1	239100	+		44026	28754	36396	36419	47487	47487					0.05821003891765031
PRRGSTGPRP	10	Unmodified	_PRRGSTGPRP_					0	0	0			REV__nc|ENSG00000090006|Q8N2S1|LTBP4	REV__nc|ENSG00000090006|Q8N2S1|LTBP4	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.8052368164062	2	540.804688	1079.59482	0.050459	2.7288E-05	0.22996	0.00012437	0.28042	0.00015165	540.8047771597005	33.339	1.6874	30.644	30.352	32.039	-2.6954					106	33	4	0	0	0	0.6349	1	902	902		37.812	2.1932	1	998350	+		44027	28754	36396	36419	47488	47488					0.05821003891765031
PRRHREQPLLL	11	Unmodified	_PRRHREQPLLL_					0	0	0			REV__ENST00000367033.3_1_1:208417261-208417633:-|nuORF	REV__ENST00000367033.3_1_1:208417261-208417633:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	472.2830810546875	3	472.28451	1413.8317	-4.9212	-0.0023242	2.9946	0.0014143	-1.9266	-0.0009099	472.28593650401154	158.64	2.575	158.42	157.5	160.08	-0.22696					106	62	3	0	0	0	0.72542	1	16133	16133		10.104	0.45776	1	56212	+		44028	24888	36397	36420	47489	47489					0.1413373038528789
PRRIFHLPP	9	Unmodified	_PRRIFHLPP_					0	0	0		CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant;ENSG00000084774|ENST00000264705|CAD	CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.8370971679688	2	566.840542	1131.66653	-4.8141	-0.0027288	-0.033419	-1.8943E-05	-4.8475	-0.0027477	566.8404403075309	157.89	0.95123	156.34	156.03	156.98	-1.545					54	27	3	0	0	0	0.64339	1	15613	15613		26.796	0.10319	1	59868			44029	176	36398	36421	47490	47490					0.10596543316250973
PRRKALDIL	9	Unmodified	_PRRKALDIL_					0	0	0			REV__tr|A0A7D6ZXP6|A0A7D6ZXP6_9CLOTAcyl-[acyl-carrier-protein]thioesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_23820PE=3SV=1	REV__tr|A0A7D6ZXP6|A0A7D6ZXP6_9CLOTAcyl-[acyl-carrier-protein]thioesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_23820PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	541.3456420898438	2	541.345658	1080.67676	-0.18719	-0.00010134	-1.1969	-0.00064794	-1.3841	-0.00074928	541.345222203672	81.441	1.5457	79.792	79.415	80.961	-1.6485					147	29	7	0	0	0	0.46377	2	6946	6909;6946		45.952	11.779	1	3232100	+		44030	32341	36399	36422	47491;47492	47492					0.139651062508392
PRRKALDIL	9	Unmodified	_PRRKALDIL_					0	0	0			REV__tr|A0A7D6ZXP6|A0A7D6ZXP6_9CLOTAcyl-[acyl-carrier-protein]thioesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_23820PE=3SV=1	REV__tr|A0A7D6ZXP6|A0A7D6ZXP6_9CLOTAcyl-[acyl-carrier-protein]thioesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_23820PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	541.3466186523438	2	541.345658	1080.67676	-0.52558	-0.00028452	-1.1101	-0.00060096	-1.6357	-0.00088548	541.3451745441885	82.59	3.0818	80.294	79.634	82.716	-2.2963					214	63	7	0	0	0	0.29717	5	4646	4646;4656;4668;4685;4691		63.306	10.334	1	3973000	+		44031	32341	36399	36422	47493;47494;47495;47496;47497	47493					0.139651062508392
PRRKALDIL	9	Unmodified	_PRRKALDIL_					0	0	0			REV__tr|A0A7D6ZXP6|A0A7D6ZXP6_9CLOTAcyl-[acyl-carrier-protein]thioesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_23820PE=3SV=1	REV__tr|A0A7D6ZXP6|A0A7D6ZXP6_9CLOTAcyl-[acyl-carrier-protein]thioesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_23820PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.3465576171875	2	541.345658	1080.67676	-0.94096	-0.00050939	-0.28271	-0.00015304	-1.2237	-0.00066243	541.3456613983815	82.909	2.3512	80.226	79.684	82.036	-2.683					196	48	7	0	0	0	0.44294	2	6890	6854;6890		47.916	7.1374	1	3004400	+		44032	32341	36399	36422	47498;47499	47499					0.139651062508392
PRRLASRLSSR	11	Unmodified	_PRRLASRLSSR_					0	0	0			REV__ENST00000174618.4_1_17:2303935-2304163:-|nuORF	REV__ENST00000174618.4_1_17:2303935-2304163:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	433.2491760253906	3	433.596976	1297.7691	0.41967	0.00018197	1.2586	0.00054571	1.6782	0.00072768	433.59728323721464	52.039	0.60583	48.856	48.666	49.272	-3.1831					20	11	3	0	0	0	0.025904	1	3087	3087		18.966	0	1	28491	+		44033	23687	36400	36423	47500	47500					0.13212584317079745
PRRLERLLGT	10	Unmodified	_PRRLERLLGT_					0	0	0			REV__ENST00000409870.1_1_2:191045641-191045836:+|nuORF	REV__ENST00000409870.1_1_2:191045641-191045836:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	605.8705444335938	2	605.872571	1209.73059	-4.8731	-0.0029525	3.9336	0.0023832	-0.93954	-0.00056924	605.8747875580638	157.58	1.169	156.04	155.73	156.9	-1.545					92	31	4	0	0	0	0.83261	1	15603	15603		14.865	3.9993	1	205220	+		44034	25484	36401	36424	47501	47501					0.13411278682542616
PRRLGLRAR	9	Unmodified	_PRRLGLRAR_					0	0	0		ENSG00000177602|ENST00000325418|HASPIN;nc|ENSG00000177602|Q8TF76-2|HASPIN	ENSG00000177602|ENST00000325418|HASPIN	ENSG00000177602|ENST00000325418|HASPIN	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.8494873046875	2	547.854516	1093.69448	0.46801	0.0002564	-2.6675	-0.0014614	-2.1994	-0.001205	547.8530847581296	140.87	0.75281	140.87	140.63	141.39	0					22	14	2	0	0	0	0.027462	1	16469	16469		15.642	2.6826	1	76342			44035	7698	36402	36425	47502	47502					0.15137866296345237
PRRLGSSAK	9	Unmodified	_PRRLGSSAK_					0	0	0			REV__ENSG00000137273|ENST00000645481|FOXF2	REV__ENSG00000137273|ENST00000645481|FOXF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.2910461425781	2	486.290882	970.567212	0.74732	0.00036342	-0.83465	-0.00040588	-0.087328	-4.2467E-05	486.2903083243787	33.018	0.89401	30.323	30.053	30.947	-2.6954					37	17	3	0	0	0	0.62352	1	849	849		29.15	4.6455	1	80760	+		44036	19444	36403	36426	47503	47503					0.08075100631515397
PRRLILKD	8	Unmodified	_PRRLILKD_					0	0	0		ENST00000444244.1_1_7:115878130-115878361:-|nuORF	ENST00000444244.1_1_7:115878130-115878361:-|nuORF	ENST00000444244.1_1_7:115878130-115878361:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	505.82666015625	2	505.827101	1009.63965	-1.2196	-0.00061688	0.87052	0.00044033	-0.34903	-0.00017655	505.8274041320969	77.702	2.9828	75.35	74.262	77.244	-2.3527					140	58	4	0	0	0	0.67872	1	4062	4062		47.657	5.2612	1	813550			44037	11955	36404	36427	47504	47504					0.13521434705080537
PRRLLPCF	8	Unmodified	_PRRLLPCF_					0	0	0		ENST00000340437.8_1_11:61171089-61171380:-|nuORF	ENST00000340437.8_1_11:61171089-61171380:-|nuORF	ENST00000340437.8_1_11:61171089-61171380:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.2894287109375	2	501.289297	1000.56404	1.3674	0.00068548	0.9365	0.00046946	2.3039	0.0011549	501.2895121117765	137.98	2.3901	136.45	135.78	138.17	-1.5284					99	50	3	0	0	0	0.75661	1	13436	13436		19.36	0	1	64432			44038	10558	36405	36428	47505	47505					0.06378134253145618
PRRLPTTK	8	Unmodified	_PRRLPTTK_					0	0	0			REV__ATRX|p.Y1667Sfs*13|1|0.04|ENSG00000085224|chrX:77633341-77633341|T/-|frameshift_variant	REV__ATRX|p.Y1667Sfs*13|1|0.04|ENSG00000085224|chrX:77633341-77633341|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	484.8036193847656	2	484.803626	967.592698	0.80858	0.000392	-0.69069	-0.00033485	0.11789	5.7152E-05	484.80311931217824	65.561	1.2695	62.615	62.35	63.62	-2.9459					49	24	3	0	0	0	0.74971	1	2623	2623		26.796	1.3459	1	183720	+		44039	15684	36406	36429	47506	47506					0.10760575153926766
PRRLPTTKV	9	Unmodified	_PRRLPTTKV_					0	0	0			REV__ATRX|p.Y1667Sfs*13|1|0.04|ENSG00000085224|chrX:77633341-77633341|T/-|frameshift_variant	REV__ATRX|p.Y1667Sfs*13|1|0.04|ENSG00000085224|chrX:77633341-77633341|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.3377075195312	2	534.337833	1066.66111	-2.8968	-0.0015479	2.273	0.0012145	-0.62378	-0.00033331	534.3389697758937	49.731	2.2182	46.589	45.937	48.155	-3.1416					92	42	3	0	0	0	0.44568	1	2834	2834		47.657	6.8792	1	787730	+		44040	15684	36407	36430	47507	47507					0.13044819733772783
PRRNSLIL	8	Unmodified	_PRRNSLIL_					0	0	0		ENST00000566338.5_1_15:31233675-31240771:-|nuORF;ENST00000567567.5_1_15:31233675-31258111:-|nuORF;ENSG00000166912|ENST00000435680|MTMR10	ENST00000566338.5_1_15:31233675-31240771:-|nuORF	ENST00000566338.5_1_15:31233675-31240771:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	484.8031311035156	2	484.803626	967.592698	0.80858	0.000392	-0.69069	-0.00033485	0.11789	5.7152E-05	484.80311931217824	65.561	1.2695	62.615	62.35	63.62	-2.9459					49	24	3	0	0	0	0.7224	1	2641	2641		38.806	1.647	1	183720			44041	6733	36408	36431	47508	47508					0.10760575153960872
PRRPAGLLML	10	Unmodified	_PRRPAGLLML_					0	0	0		LY75|p.S1527*|1|0.06|ENSG00000054219|chr2:159810645-159810645|G/-|frameshift_variant;ENSG00000054219|ENST00000263636|LY75;nc|ENSG00000054219|O60449-3|LY75;nc|ENSG00000054219|O60449-2|LY75;ENST00000484559.1_1_2:160728960-160761235:-|nuORF;ENST00000492955.1_1_2:160760093-160761235:-|nuORF	LY75|p.S1527*|1|0.06|ENSG00000054219|chr2:159810645-159810645|G/-|frameshift_variant	LY75|p.S1527*|1|0.06|ENSG00000054219|chr2:159810645-159810645|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3438720703125	2	562.342061	1122.66957	1.2434	0.00069921	1.201	0.00067537	2.4444	0.0013746	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.75594	1	14226	14226		24.203	0	1	683710			44042	1206	36409	36432	47509	47509					0.11314050378769025
PRRPLLPTI	9	Unmodified	_PRRPLLPTI_					0	0	0		ENSG00000152492|ENST00000392455|CCDC50	ENSG00000152492|ENST00000392455|CCDC50	ENSG00000152492|ENST00000392455|CCDC50	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8431396484375	2	531.842751	1061.67095	-1.3008	-0.00069181	0.36592	0.00019461	-0.93486	-0.0004972	531.8428658460189	86.158	2.0283	84.667	84.295	86.323	-1.4907					118	39	5	0	0	0	0.37135	1	7493	7493		54.776	7.119	1	1213100			44043	5627	36410	36433	47510	47510					0.14258007739181267
PRRPLLPTI	9	Unmodified	_PRRPLLPTI_					0	0	0		ENSG00000152492|ENST00000392455|CCDC50	ENSG00000152492|ENST00000392455|CCDC50	ENSG00000152492|ENST00000392455|CCDC50	MULTI-MSMS	OvCa9_classI_Rep3	3	531.843505859375	2	531.842751	1061.67095	-0.51734	-0.00027514	-0.0817	-4.3452E-05	-0.59904	-0.00031859	531.8426795493502	87.347	2.6082	85.17	84.633	87.241	-2.1768					142	51	5	0	0	0	0.5811	1	5255	5255		34.173	1.3601	1	1464300			44044	5627	36410	36433	47511	47511					0.14258007739181267
PRRPPRSRPF	10	Unmodified	_PRRPPRSRPF_					0	0	0		ENST00000578321.1_1_17:19913189-19913486:+|nuORF	ENST00000578321.1_1_17:19913189-19913486:+|nuORF	ENST00000578321.1_1_17:19913189-19913486:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3684692382812	2	633.37053	1264.72651	-4.5141	-0.0028591	2.383	0.0015093	-2.1311	-0.0013498	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.7759	2	15523	15481;15523		21.96	4.4738	1	369460			44045	13966	36411	36434	47512;47513	47513					0.10473233979519136
PRRPRCGPRAR	11	Unmodified	_PRRPRCGPRAR_					0	0	0			REV__nc|ENSG00000105327|Q96PG8|BBC3	REV__nc|ENSG00000105327|Q96PG8|BBC3	MULTI-MSMS	OvCa9_classI_Rep3	3	441.2542724609375	3	441.254668	1320.74217	1.4046	0.00061976	-1.963	-0.0008662	-0.55849	-0.00024643	441.2537172485591	65.982	1.8287	63.036	62.554	64.383	-2.9459					68	35	4	0	0	0	0.70032	1	2666	2666		29.551	4.483	1	107960	+		44046	28781	36412	36435	47514	47514					0.09463197224886244
PRRPRCTAGPG	11	Unmodified	_PRRPRCTAGPG_					0	0	0			REV__ENST00000520655.5_1_8:42128987-42129218:+|nuORF	REV__ENST00000520655.5_1_8:42128987-42129218:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	584.7816162109375	2	584.311823	1166.60909	-1.9096	-0.0011158	-0.63136	-0.00036891	-2.5409	-0.0014847	584.3111862144154	85.278	0.34541	83.787	83.554	83.9	-1.4906					12	6	2	0	0	0	0.025257	1	7369	7369		36.447	0	1	20541	+		44047	27058	36413	36436	47515	47515					0.032453330483804166
PRRQIRGP	8	Unmodified	_PRRQIRGP_					0	0	0			REV__ENST00000396137.4_1_5:78532070-78532214:+|nuORF	REV__ENST00000396137.4_1_5:78532070-78532214:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	490.2994079589844	2	490.299042	978.583531	-0.93703	-0.00045943	0.74754	0.00036652	-0.1895	-9.2909E-05	490.2992510026684	34.054	0.98944	31.344	31.119	32.109	-2.7097					41	19	3	0	0	0	0.73288	1	1273	1273		35.201	1.6851	1	105000	+		44048	25328	36414	36437	47516	47516					0.09338226588272391
PRRQIRGP	8	Unmodified	_PRRQIRGP_					0	0	0			REV__ENST00000396137.4_1_5:78532070-78532214:+|nuORF	REV__ENST00000396137.4_1_5:78532070-78532214:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	490.299042	978.583531	-0.93703	-0.00045943	0.74754	0.00036652	-0.1895	-9.2909E-05	490.2992510026684	34.054	0.98944	31.344	31.119	32.109	-2.7097	0	0	NaN	35.201	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105000	+		44049	25328	36414	36437							0.09338226588272391
PRRQQAIET	9	Unmodified	_PRRQQAIET_					0	0	0			REV__ENSG00000223611|ENST00000486479|SUPT20HL2	REV__ENSG00000223611|ENST00000486479|SUPT20HL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.837158203125	2	549.804354	1097.59415	-0.66031	-0.00036304	1.8618	0.0010236	1.2015	0.00066061	549.8060300513926	42.561	0.25265	42.561	42.412	42.665	0					8	5	2	0	0	0	0.027462	1	2732	2732		11.511	4.7755	1	71058	+		44050	23354	36415	36438	47517	47517					0.049261644520584014
PRRRAKRWG	9	Unmodified	_PRRRAKRWG_					0	0	0			REV__ENST00000355358.1_1_10:8093256-8094410:-|nuORF	REV__ENST00000355358.1_1_10:8093256-8094410:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	591.85693359375	2	591.85759	1181.70063	-1.0559	-0.00062492	-0.098364	-5.8218E-05	-1.1542	-0.00068313	591.8573910777626	39.473	1.2899	36.763	36.459	37.749	-2.7097					73	25	4	0	0	0	0.55588	1	1932	1932		37.159	1.9584	1	212370	+		44051	24746	36416	36439	47518	47518					0.11704384527865841
PRRRGQTLVF	10	Unmodified	_PRRRGQTLVF_					0	0	0		ENST00000296498.3_1_4:119259441-119273552:-|nuORF	ENST00000296498.3_1_4:119259441-119273552:-|nuORF	ENST00000296498.3_1_4:119259441-119273552:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	615.2584838867188	2	615.364913	1228.71527	0.58779	0.0003617	-0.64916	-0.00039947	-0.061377	-3.7769E-05	615.3654404245057	98.045	0.25496	95.666	95.47	95.725	-2.3786					6	4	2	0	0	0	0.026849	1	8681	8681		40.778	13.731	1	11872			44052	10137	36417	36440	47519	47519					0.11006411885364287
PRRRGTGARR	10	Unmodified	_PRRRGTGARR_					0	0	0		ENST00000481904.5_1_6:35744395-35744569:+|nuORF	ENST00000481904.5_1_6:35744395-35744569:+|nuORF	ENST00000481904.5_1_6:35744395-35744569:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	591.857177734375	2	591.855578	1181.6966	-1.0559	-0.00062492	3.3001	0.0019532	2.2442	0.0013282	591.8573910777626	39.473	1.2899	36.763	36.459	37.749	-2.7097					73	25	4	0	0	0	0.71173	1	1919	1919		29.17	1.0886	1	212370			44053	12556	36418	36441	47520	47520					0.11302295034170129
PRRRPTPQ	8	Unmodified	_PRRRPTPQ_					0	0	0			REV__ENST00000421556.5_1_11:64494776-64511570:-|nuORF	REV__ENST00000421556.5_1_11:64494776-64511570:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.2810363769531	2	504.296499	1006.57845	2.021	0.0010192	-0.52301	-0.00026375	1.498	0.00075545	504.29533708215496	85.647	0.32713	85.647	85.422	85.75	0					11	7	2	0	0	0	0.028476	1	8986	8986		19.36	0	1	229030	+		44054	25605	36419	36442	47521	47521					0.0754192272564751
PRRRRSGLN	9	Unmodified	_PRRRRSGLN_					0	0	0			REV__ENST00000501356.5_1_11:94883767-94884067:+|nuORF	REV__ENST00000501356.5_1_11:94883767-94884067:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	556.3331298828125	2	556.331405	1110.64826	0.19549	0.00010876	2.3925	0.001331	2.588	0.0014398	556.3324974852751	69.386	1.1434	66.572	66.261	67.405	-2.8143					67	22	4	0	0	0	0.42676	1	3086	3086		49.442	3.4693	1	473980	+		44055	26819	36420	36443	47522	47522					0.09735801394299415
PRRRRSHSRER	11	Unmodified	_PRRRRSHSRER_					0	0	0		nc|ENSG00000116754|Q05519-2|SRSF11;ENSG00000116754|ENST00000370949|SRSF11;ENST00000463859.5_1_1:70703183-70712812:+|nuORF	nc|ENSG00000116754|Q05519-2|SRSF11	nc|ENSG00000116754|Q05519-2|SRSF11	MULTI-SECPEP	OvCa9_classI_Rep2	2	497.8415832519531	3	498.285795	1491.83556	2.1913	0.0010919	1.0737	0.000535	3.265	0.0016269	498.62062534128734	27.543	0.58479	24.833	24.66	25.245	-2.7097					32	13	3	0	0	0	0.026518	1	527	527		8.4073	1.7476	1	41683			44056	3207	36421	36444	47523	47523					0.10931212931654954
PRRRRTPRPQR	11	Unmodified	_PRRRRTPRPQR_					0	0	0		ENST00000242719.3_1_1:51702154-51702313:+|nuORF	ENST00000242719.3_1_1:51702154-51702313:+|nuORF	ENST00000242719.3_1_1:51702154-51702313:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	492.6352844238281	3	492.634536	1474.88178	-4.4123	-0.0021737	4.0762	0.0020081	-0.33617	-0.00016561	492.6364518280441	160.52	2.4825	160.29	159.35	161.83	-0.22697					136	50	4	0	0	0	0.72542	2	16318	16318;16368		10.104	0.8921	1	91160			44057	9763	36422	36445	47524;47525	47524					0.1633327783376899
PRRRRTQGR	9	Unmodified	_PRRRRTQGR_					0	0	0		chr17:50199453-50199796|89|81.37|0.06|10.31|-|2|COL1A1,None|2	chr17:50199453-50199796|89|81.37|0.06|10.31|-|2|COL1A1,None|2	chr17:50199453-50199796|89|81.37|0.06|10.31|-|2|COL1A1,None|2	MULTI-MSMS	OvCa9_classI_Rep4_	4	591.8565673828125	2	591.855578	1181.6966	-0.045511	-2.6936E-05	1.8626	0.0011024	1.8171	0.0010755	591.8566337031529	39.492	1.4669	36.566	36.246	37.713	-2.9264					78	28	4	0	0	0	0.51865	1	1618	1618		40.778	1.5253	1	369550			44058	391	36423	36446	47526	47526					0.11302295034170129
PRRRVAWGA	9	Unmodified	_PRRRVAWGA_					0	0	0		chr12:53468832-53479406|186|20.35|0.53|5.26|+|2|PCBP2,PCBP2|2	chr12:53468832-53479406|186|20.35|0.53|5.26|+|2|PCBP2,PCBP2|2	chr12:53468832-53479406|186|20.35|0.53|5.26|+|2|PCBP2,PCBP2|2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.2799682617188	2	534.812316	1067.61008	-0.84827	-0.00045367	-1.1476	-0.00061373	-1.9958	-0.0010674	534.8114812956511	48.082	1.2304	44.974	44.531	45.761	-3.1077					51	23	3	0	0	0	0.027462	1	2585	2585		25.45	14.585	1	183420			44059	319	36424	36447	47527	47527					0.07897915479611584
PRRRVCRS	8	Unmodified	_PRRRVCRS_					0	0	0		ENST00000294484.6_2_1:11577566-11579522:+|nuORF	ENST00000294484.6_2_1:11577566-11579522:+|nuORF	ENST00000294484.6_2_1:11577566-11579522:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.3015747070312	2	515.295976	1028.5774	-0.78288	-0.00040342	-2.7021	-0.0013924	-3.485	-0.0017958	515.2949523356231	40.185	0.4074	40.185	39.84	40.247	0					14	8	2	0	0	0	0.028476	1	2394	2394		31.955	16.313	1	118060			44060	10114	36425	36448	47528	47528					0.06425385085094604
PRRRWRRRRRT	11	Unmodified	_PRRRWRRRRRT_					0	0	0		ENST00000442267.2_1_4:141622749-141677260:-|nuORF	ENST00000442267.2_1_4:141622749-141677260:-|nuORF	ENST00000442267.2_1_4:141622749-141677260:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	413.2215881347656	4	413.757079	1650.99921	-0.16715	-6.916E-05	-3.9094	-0.0016175	-4.0765	-0.0016867	413.7552941180172	27.514	0.75001	27.514	27.341	28.091	0					27	14	5	0	0	0	0.026551	1	816	816		1.4188	1.0782	1	105270			44061	11942	36426	36449	47529	47529					0.19974855493205723
PRRSLAGVLL	10	Unmodified	_PRRSLAGVLL_					0	0	0			REV__ENST00000532887.5_1_8:145582536-145582912:+|nuORF	REV__ENST00000532887.5_1_8:145582536-145582912:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	541.3455200195312	2	541.345658	1080.67676	-0.18719	-0.00010134	-1.1969	-0.00064794	-1.3841	-0.00074928	541.345222203672	81.441	1.5457	79.792	79.415	80.961	-1.6485					147	29	7	0	0	0	0.62299	1	6927	6927		39.253	0.44669	1	3232100	+		44062	27245	36427	36450	47530	47530					0.139651062508392
PRRSVPKLL	9	Unmodified	_PRRSVPKLL_					0	0	0			REV__ENSG00000165757|ENST00000375377|JCAD	REV__ENSG00000165757|ENST00000375377|JCAD	MULTI-MSMS	OvCa9_classI_Rep3	3	533.3491821289062	2	533.3482	1064.68185	-0.32178	-0.00017162	-0.064184	-3.4232E-05	-0.38596	-0.00020585	533.3481150232365	93.925	1.7195	91.964	91.577	93.296	-1.9617					119	33	5	0	0	0	0.42676	1	6084	6084		49.442	1.5259	1	1484200	+		44063	21114	36428	36451	47531	47531					0.15209410113470767
PRRTDLTV	8	Unmodified	_PRRTDLTV_					0	0	0		ENST00000592597.1_1_19:1093873-1095344:-|nuORF;ENSG00000099817|ENST00000615234|POLR2E;ENST00000586817.5_1_19:1089487-1094188:-|nuORF	ENST00000592597.1_1_19:1093873-1095344:-|nuORF	ENST00000592597.1_1_19:1093873-1095344:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	479.27667236328125	2	479.277441	956.540328	-1.3781	-0.00066051	1.4203	0.0006807	0.042118	2.0186E-05	479.2778548190663	50.558	1.983	47.764	47.232	49.215	-2.794					76	39	3	0	0	0	0.71369	1	3283	3283		40.573	0	1	369850			44064	1981	36429	36452	47532	47532					0.060319920203255606
PRRVHASLR	9	Unmodified	_PRRVHASLR_					0	0	0			REV__nc|ENSG00000145506|Q969F2-2|NKD2	REV__nc|ENSG00000145506|Q969F2-2|NKD2	MULTI-MSMS	OvCa9_classI_Rep2	2	546.3308715820312	2	546.330873	1090.64719	-2.6411	-0.0014429	2.3987	0.0013105	-0.24246	-0.00013246	546.3320576477423	36.639	1.8723	33.93	33.647	35.519	-2.7097					83	37	3	0	0	0	0.62352	1	1584	1584		29.15	1.2673	1	180730	+		44065	19966	36430	36453	47533	47533					0.10549587025343499
PRRWIPVWR	9	Unmodified	_PRRWIPVWR_					0	0	0			REV__ENST00000508276.1_1_4:2933511-2933652:-|nuORF	REV__ENST00000508276.1_1_4:2933511-2933652:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3709106445312	2	633.372541	1264.73053	-4.8823	-0.0030923	-0.24331	-0.00015411	-5.1256	-0.0032464	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.6653	1	13270	13270		24.203	0.68005	1	765700	+		44066	26911	36431	36454	47534	47534					0.10875323473214848
PRRWQQRQEWR	11	Unmodified	_PRRWQQRQEWR_					0	0	0			REV__ENST00000566303.5_1_15:79059386-79103601:-|nuORF	REV__ENST00000566303.5_1_15:79059386-79103601:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	542.6224365234375	3	542.622185	1624.84472	0.037685	2.0449E-05	0.27673	0.00015016	0.31442	0.00017061	542.6223764962355	71.226	1.989	68.719	68.281	70.27	-2.5071					125	37	6	0	0	0	0.72552	2	5734	5716;5734		8.7993	3.1005	1	990210	+		44067	19382	36432	36455	47535;47536	47536					0.05729561497355462
PRRWQQRQEWR	11	Unmodified	_PRRWQQRQEWR_					0	0	0			REV__ENST00000566303.5_1_15:79059386-79103601:-|nuORF	REV__ENST00000566303.5_1_15:79059386-79103601:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	542.6220703125	3	542.622185	1624.84472	0.55961	0.00030366	-0.12804	-6.9478E-05	0.43157	0.00023418	542.6220727652757	71.468	2.3255	68.865	68.584	70.909	-2.6023					160	46	6	0	0	0	0.72511	4	3342	3329;3335;3342;3348		14.086	8.6731	1	1802800	+		44068	19382	36432	36455	47537;47538;47539;47540	47539					0.05729561497355462
PRRWQQRQEWR	11	Unmodified	_PRRWQQRQEWR_					0	0	0			REV__ENST00000566303.5_1_15:79059386-79103601:-|nuORF	REV__ENST00000566303.5_1_15:79059386-79103601:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.9573974609375	3	542.622185	1624.84472	-1.8303	-0.00099318	1.5568	0.00084473	-0.27358	-0.00014845	542.9573650451755	72.338	1.8908	68.942	68.667	70.557	-3.3961					124	38	6	0	0	0	0.72477	1	5555	5555		18.531	10.497	1	1356300	+		44069	19382	36432	36455	47541	47541					0.05729561497355462
PRSALPGIPH	10	Unmodified	_PRSALPGIPH_					0	0	0		ENST00000534270.1_1_8:145742254-145742921:-|nuORF	ENST00000534270.1_1_8:145742254-145742921:-|nuORF	ENST00000534270.1_1_8:145742254-145742921:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	522.8015747070312	2	522.801083	1043.58761	-0.60564	-0.00031663	0.2391	0.000125	-0.36654	-0.00019163	522.8010421976496	33.203	1.3901	30.493	30.272	31.662	-2.7097					70	27	4	0	0	0	0.65434	1	1218	1218		35.618	2.1027	1	560900			44070	13351	36433	36456	47542	47542					0.06756271291305893
PRSFLGKEAAP	11	Unmodified	_PRSFLGKEAAP_					0	0	0		ENST00000405878.5_1_22:42017468-42017543:+|nuORF	ENST00000405878.5_1_22:42017468-42017543:+|nuORF	ENST00000405878.5_1_22:42017468-42017543:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	587.813232421875	2	586.824755	1171.63496	-0.48702	-0.00028579	-1.4678	-0.00086134	-1.9548	-0.0011471	586.8237778974859	98.146	2.122	97.253	96.183	98.305	-0.89306					84	42	3	0	0	0	0.025656	1	8939	8939		32.751	3.601	1	51088			44071	11475	36434	36457	47543	47543					0.056005057716674855
PRSKLPTLS	9	Unmodified	_PRSKLPTLS_					0	0	0		ENSG00000222046|ENST00000409358|DCDC2B	ENSG00000222046|ENST00000409358|DCDC2B	ENSG00000222046|ENST00000409358|DCDC2B	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.8041076660156	2	499.803291	997.59203	-0.33802	-0.00016895	-0.25211	-0.00012601	-0.59014	-0.00029495	499.80314322548156	59.02	1.8331	55.628	55.3	57.133	-3.392					85	36	4	0	0	0	0.1804	2	3943	3931;3943		79.713	5.4575	1	2433000			44072	9246	36435	36458	47544;47545	47545					0.09313735714226823
PRSLPSPLV	9	Unmodified	_PRSLPSPLV_					0	0	0		ENST00000254958.9_1_20:10619810-10620026:-|nuORF	ENST00000254958.9_1_20:10619810-10620026:-|nuORF	ENST00000254958.9_1_20:10619810-10620026:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	483.2939758300781	2	483.292559	964.570566	-0.24662	-0.00011919	-0.1302	-6.2925E-05	-0.37682	-0.00018211	483.2924158875242	90.809	2.292	88.233	87.801	90.093	-2.575					88	44	3	0	0	0	0.18193	1	7830	7830		79.451	7.5735	1	998200			44073	9819	36436	36459	47546	47546					0.08686350685525213
PRSLRLGG	8	Unmodified	_PRSLRLGG_					0	0	0			REV__AHDC1|p.M539Sfs*46|1|0.61|ENSG00000126705|chr1:27550500-27550500|A/-|frameshift_variant;REV__ENSG00000126705|ENST00000673934|AHDC1	REV__AHDC1|p.M539Sfs*46|1|0.61|ENSG00000126705|chr1:27550500-27550500|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	428.2616882324219	2	428.261594	854.508634	-0.2241	-9.5974E-05	0.26636	0.00011407	0.042257	1.8097E-05	428.2616025856162	144.91	1.2947	143.47	143.1	144.39	-1.4357					70	24	4	0	0	0	0.74229	1	14224	14224		30.504	5.0535	1	398580	+		44074	15580;18791	36437	36460	47547	47547					0.07556044057048439
PRSLSWLASRL	11	Unmodified	_PRSLSWLASRL_					0	0	0		ENST00000561859.5_1_16:23555925-23568664:-|nuORF	ENST00000561859.5_1_16:23555925-23568664:-|nuORF	ENST00000561859.5_1_16:23555925-23568664:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	643.3738403320312	2	643.372404	1284.73025	-0.42564	-0.00027384	0.23787	0.00015304	-0.18777	-0.0001208	643.3725031128389	92.341	1.5107	89.798	89.466	90.976	-2.5425					96	29	5	0	0	0	0.31648	1	8002	8002		66.962	0	1	1009000			44075	13761	36438	36461	47548	47548					0.09927858962691971
PRSNDSITH	9	Unmodified	_PRSNDSITH_					0	0	0		ENST00000394660.6_1_15:81605556-81605697:+|nuORF	ENST00000394660.6_1_15:81605556-81605697:+|nuORF	ENST00000394660.6_1_15:81605556-81605697:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.7938232421875	2	513.751787	1025.48902	-1.1336	-0.00058239	-1.3889	-0.00071356	-2.5225	-0.001296	513.7509159503034	42.285	0.8689	39.304	39.064	39.933	-2.9804					25	16	2	0	0	0	0.027433	1	2002	2002		54.776	8.8041	1	50058			44076	11272	36439	36462	47549	47549					-0.022703767443999823
PRSNDSITH	9	Unmodified	_PRSNDSITH_					0	0	0		ENST00000394660.6_1_15:81605556-81605697:+|nuORF	ENST00000394660.6_1_15:81605556-81605697:+|nuORF	ENST00000394660.6_1_15:81605556-81605697:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	513.751787	1025.48902	1.0999	0.00056507	-3.839	-0.0019723	-2.7391	-0.0014072	513.7498507079936	41.926	0.69051	39.217	38.98	39.67	-2.7097	-0.043805	-0.0010658	NaN	54.776	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22259			44077	11272	36439	36462							-0.022703767443999823
PRSPLLLSAS	10	Unmodified	_PRSPLLLSAS_					0	0	0			REV__nc|ENSG00000139880|Q86UP0-3|CDH24	REV__nc|ENSG00000139880|Q86UP0-3|CDH24	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.8424682617188	2	520.808574	1039.60259	-0.89039	-0.00046372	0.47782	0.00024885	-0.41257	-0.00021487	520.8087252831427	101.61	0.79308	100.85	100.67	101.46	-0.76401					33	15	3	0	0	0	0.026602	1	9316	9316		65.465	33.511	1	83262	+		44078	19640	36440	36463	47550	47550					0.08437718368668357
PRSPLLLSAS	10	Unmodified	_PRSPLLLSAS_					0	0	0			REV__nc|ENSG00000139880|Q86UP0-3|CDH24	REV__nc|ENSG00000139880|Q86UP0-3|CDH24	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.842041015625	2	520.808574	1039.60259	-0.38159	-0.00019873	0.14915	7.7679E-05	-0.23244	-0.00012105	520.8085667614664	102.4	1.5152	100.88	100.53	102.05	-1.5211					44	20	3	0	0	0	0.026653	1	7174	7174		58.23	12.258	1	102160	+		44079	19640	36440	36463	47551	47551					0.08437718368668357
PRSPPPPPF	9	Unmodified	_PRSPPPPPF_					0	0	0			REV__ENST00000600059.5_1_19:48988799-49002658:-|nuORF	REV__ENST00000600059.5_1_19:48988799-49002658:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.2961730957031	2	496.271627	990.528701	2.1023	0.0010433	0.60829	0.00030188	2.7106	0.0013452	496.27174568895117	86.899	0.9912	86.899	86.637	87.628	0					53	23	4	0	0	0	0.027462	1	9258	9258		40.573	8.6178	1	2532100	+		44080	28026	36441	36464	47552	47552					0.03305794996992972
PRSPPWALPL	10	Unmodified	_PRSPPWALPL_					0	0	0			REV__ENSG00000137103|ENST00000643932|TMEM8B	REV__ENSG00000137103|ENST00000643932|TMEM8B	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3261108398438	2	567.326934	1132.63931	0.7623	0.00043247	4.2678	0.0024212	5.0301	0.0028537	567.3291667889723	142.3	3.0938	140.84	139.71	142.81	-1.4627					144	59	3	0	0	0	0.72142	1	13934	13934		28.081	3.5623	1	54551	+		44081	19435	36442	36465	47553	47553					0.07830014985211164
PRSRAGSGVAA	11	Unmodified	_PRSRAGSGVAA_					0	0	0			REV__ENST00000371443.5_1_9:140445786-140446769:+|nuORF	REV__ENST00000371443.5_1_9:140445786-140446769:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.768798828125	2	514.783422	1027.55229	-1.2553	-0.00064618	-2.2383	-0.0011522	-3.4936	-0.0017984	515.2819557093503	38.637	0.44444	35.927	35.618	36.062	-2.7097					16	8	3	0	0	0	0.026258	1	1819	1819		19.997	6.5427	1	11576	+		44082	24981	36443	36466	47554	47554					0.039616087635295116
PRTGLLAGHS	10	Unmodified	_PRTGLLAGHS_					0	0	0		ENST00000606714.5_1_6:52442273-52442435:+|nuORF	ENST00000606714.5_1_6:52442273-52442435:+|nuORF	ENST00000606714.5_1_6:52442273-52442435:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.7823791503906	2	504.78289	1007.55123	0.47731	0.00024094	-0.61878	-0.00031235	-0.14147	-7.1413E-05	504.78247074186464	35.38	1.1994	32.531	32.24	33.439	-2.849					48	23	3	0	0	0	0.41408	1	1133	1133		66.429	15.094	1	96119			44083	14278	36444	36467	47555	47555					0.047753943946077015
PRTIIVPPL	9	Unmodified	_PRTIIVPPL_					0	0	0		nc|ENSG00000064393|Q9H2X6-2|HIPK2;nc|ENSG00000064393|Q9H2X6-3|HIPK2;ENSG00000064393|ENST00000406875|HIPK2	nc|ENSG00000064393|Q9H2X6-2|HIPK2	nc|ENSG00000064393|Q9H2X6-2|HIPK2	MULTI-MSMS	OvCa9_classI_Rep3	3	503.32568359375	2	503.326402	1004.63825	0.16809	8.4607E-05	-0.79943	-0.00040237	-0.63134	-0.00031777	503.32592163990955	113.76	2.5159	112.69	112.25	114.76	-1.0753					117	49	4	0	0	0	0.62352	1	8436	8436		29.15	0	1	1085400			44084	1299	36445	36468	47556	47556					0.13611800616320124
PRTIYENR	8	Unmodified	_PRTIYENR_					0	0	0		nc|ENSG00000244687|Q13404-1|UBE2V1;ENST00000397758.2_1_3:175436135-175436456:-|nuORF;ENSG00000244687|ENST00000371674|UBE2V1;ENST00000467839.5_1_20:48700476-48729665:-|nuORF;nc|ENSG00000244687|Q13404-7|UBE2V1;nc|ENSG00000244687|Q13404-2|UBE2V1	nc|ENSG00000244687|Q13404-1|UBE2V1	nc|ENSG00000244687|Q13404-1|UBE2V1	MSMS	OvCa99_classI_Rep5	1	524.7803344726562	2	524.780348	1047.54614	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.33	1	42.33	41.83	42.83	0								0	0	0	0.30129	1	2712	2712		37.159	5.2042	1				44085	15345	36446	36469	47557	47557					0.024270905319781377
PRTKSRAVRAP	11	Unmodified	_PRTKSRAVRAP_					0	0	0		ENST00000470814.1_1_22:19709577-19710004:+|nuORF	ENST00000470814.1_1_22:19709577-19710004:+|nuORF	ENST00000470814.1_1_22:19709577-19710004:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	413.587646484375	3	413.586189	1237.73674	1.5895	0.00065738	1.698	0.00070227	3.2875	0.0013596	413.5867931980936	68.355	2.099	65.541	64.862	66.961	-2.8144					118	41	5	0	0	0	0.69081	1	2976	2976		22.562	0	1	366370			44086	12369	36447	36470	47558	47558					0.1273779691407526
PRTLLPPCGL	10	Unmodified	_PRTLLPPCGL_					0	0	0		ENST00000064778.8_1_11:73115223-73115337:-|nuORF	ENST00000064778.8_1_11:73115223-73115337:-|nuORF	ENST00000064778.8_1_11:73115223-73115337:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	533.8084106445312	2	533.807519	1065.60049	-0.10269	-5.4819E-05	2.4568	0.0013115	2.3541	0.0012566	533.8091851455895	95.731	0.9399	93.903	93.531	94.471	-1.8286					49	18	5	0	0	0	0.35465	1	6252	6252		74.255	18.751	1	767370			44087	9631	36448	36471	47559	47559					0.07030966359207014
PRTLLSIADIL	11	Unmodified	_PRTLLSIADIL_					0	0	0		ENSG00000179528|ENST00000377566|LBX2	ENSG00000179528|ENST00000377566|LBX2	ENSG00000179528|ENST00000377566|LBX2	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3696899414062	2	606.371538	1210.72852	-2.264	-0.0013728	-1.0272	-0.00062285	-3.2912	-0.0019957	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.69808	1	12441	12441		30.318	4.7437	1	205770			44088	7828	36449	36472	47560	47560					0.13158805154080255
PRTLLSPLAPV	11	Unmodified	_PRTLLSPLAPV_					0	0	0		nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1;PLXND1|p.E1457*|1|0.09|ENSG00000004399|chr3:129565492-129565493|-/A|frameshift_variant	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MULTI-MSMS	OvCa9_classI_Rep3	3	582.3606567382812	2	582.360973	1162.70739	-1.9743	-0.0011498	1.7664	0.0010287	-0.20794	-0.00012109	582.3619073180486	117.3	2.4773	116.26	115.6	118.07	-1.0324					133	49	5	0	0	0	0.67529	1	8801	8801		37.812	0	1	707120			44089	825	36450	36473	47561	47561					0.13254839845239985
PRTLPATSR	9	Unmodified	_PRTLPATSR_					0	0	0		LTBP4-RBM39|2|fusion;LTBP4-RBM39|1|fusion;nc|ENSG00000090006|Q8N2S1|LTBP4;ENST00000595529.1_1_19:41112383-41114583:+|nuORF;LTBP4-RBM39|6|fusion;LTBP4-RBM39|5|fusion;LTBP4-RBM39|4|fusion;LTBP4-RBM39|3|fusion;ENSG00000090006|ENST00000396819|LTBP4;nc|ENSG00000090006|Q8N2S1-3|LTBP4	LTBP4-RBM39|2|fusion	LTBP4-RBM39|2|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.3011474609375	2	499.790715	997.566878	-1.0475	-0.00052352	1.1056	0.00055254	0.058082	2.9029E-05	499.7910255988939	48.333	1.8363	45.624	44.786	46.623	-2.7097					65	36	3	0	0	0	0.027462	1	3103	3103		26.693	4.733	1	110740			44090	14805	36451	36474	47562	47562					0.06799680911660744
PRTPPYQV	8	Unmodified	_PRTPPYQV_					0	0	0		nc|ENSG00000178287|Q08648|SPAG11B;chr8:7848843-7860347|130|21.17|0.04|9.1|+|ENST00000434307|SPAG11A,SPAG11A;chr8:7451199-7462707|160|31.82|0.03|9.87|-|ENST00000297498|SPAG11B,SPAG11B;nc|ENSG00000178287|Q6PDA7|SPAG11A	nc|ENSG00000178287|Q08648|SPAG11B	nc|ENSG00000178287|Q08648|SPAG11B	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.2716369628906	2	479.261259	956.507966	-1.3934	-0.00066779	-1.9155	-0.00091801	-3.3088	-0.0015858	479.26023057173023	52.479	0.78881	49.666	49.345	50.134	-2.8129					22	15	2	0	0	0	0.028476	1	3475	3475		24.203	1.1603	1	47588			44091	549	36452	36475	47563	47563					0.027972046173204035
PRTQRTTIR	9	Unmodified	_PRTQRTTIR_					0	0	0			REV__ENST00000314940.6_1_5:137089244-137089340:-|nuORF	REV__ENST00000314940.6_1_5:137089244-137089340:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	564.8345947265625	2	564.833446	1127.65234	-0.86944	-0.00049109	3.8662	0.0021838	2.9968	0.0016927	564.8354063300067	55.53	0.54649	52.726	52.382	52.928	-2.804					30	10	4	0	0	0	0.51177	1	3871	3871		41.427	8.6142	1	267850	+		44092	24389	36453	36476	47564	47564					0.09361846097317539
PRTVNTMALL	10	Oxidation (M)	_PRTVNTM(Oxidation (M))ALL_		PRTVNTM(1)ALL		PRTVNTM(65)ALL	0	0	1		nc|ENSG00000142197|Q9Y3R5-2|DOP1B;ENSG00000142197|ENST00000691173|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.3131103515625	2	566.313166	1130.61178	1.1399	0.00064555	-1.0539	-0.00059685	0.085989	4.8697E-05	566.3125295267077	60.336	1.3875	56.906	56.65	58.038	-3.43					81	27	4	0	0	0	0.42082	1	4101	4101		65.465	7.2191	1	1427600			44093	4961	36454	36477	47565	47565		158			0.05169743662668225
PRVDFVGEV	9	Unmodified	_PRVDFVGEV_					0	0	0		ENSG00000187942|ENST00000344642|LDLRAD2	ENSG00000187942|ENST00000344642|LDLRAD2	ENSG00000187942|ENST00000344642|LDLRAD2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.78887939453125	2	509.271824	1016.5291	-1.6503	-0.00084044	-2.9567	-0.0015058	-4.607	-0.0023462	509.2704164451788	48.895	0.67942	45.788	45.502	46.181	-3.1077					19	12	2	0	0	0	0.027462	1	2691	2691		19.997	0	1	28824			44094	8442	36455	36478	47566	47566					0.021491699262014663
PRVEGPPQA	9	Unmodified	_PRVEGPPQA_					0	0	0		ENSG00000179715|ENST00000546455|PCED1B	ENSG00000179715|ENST00000546455|PCED1B	ENSG00000179715|ENST00000546455|PCED1B	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.7557067871094	2	475.756341	949.498129	-0.17479	-8.3156E-05	-0.48056	-0.00022863	-0.65535	-0.00031179	475.7560711152342	117.55	1.1007	116.2	115.84	116.94	-1.3444					42	20	3	0	0	0	0.63422	1	10997	10997		27.882	1.1893	1	82075			44095	7839	36456	36479	47567	47567					0.021360166119507085
PRVFPLPPSKQ	11	Unmodified	_PRVFPLPPSKQ_					0	0	0		ENST00000595940.5_1_19:4714325-4722526:-|nuORF;ENST00000600497.5_1_19:4715962-4719894:-|nuORF	ENST00000595940.5_1_19:4714325-4722526:-|nuORF	ENST00000595940.5_1_19:4714325-4722526:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3690795898438	2	633.371872	1264.72919	-4.5141	-0.0028591	0.26314	0.00016666	-4.251	-0.0026925	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.71498	1	15541	15541		24.519	0	1	369460			44096	14181	36457	36480	47568	47568					0.10741644593804267
PRVFPLPPSKQ	11	Unmodified	_PRVFPLPPSKQ_					0	0	0		ENST00000595940.5_1_19:4714325-4722526:-|nuORF;ENST00000600497.5_1_19:4715962-4719894:-|nuORF	ENST00000595940.5_1_19:4714325-4722526:-|nuORF	ENST00000595940.5_1_19:4714325-4722526:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3695678710938	2	633.371872	1264.72919	-4.8823	-0.0030923	0.81247	0.0005146	-4.0699	-0.0025777	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.71191	2	13039	13026;13039		25.574	1.8369	1	765700			44097	14181	36457	36480	47569;47570	47570					0.10741644593804267
PRVGIRSVCVS	11	Unmodified	_PRVGIRSVCVS_					0	0	0		nc|ENSG00000137802|O60336-2|MAPKBP1;ENSG00000137802|ENST00000457542|MAPKBP1;nc|ENSG00000137802|O60336-3|MAPKBP1;nc|ENSG00000137802|O60336|MAPKBP1	nc|ENSG00000137802|O60336-2|MAPKBP1	nc|ENSG00000137802|O60336-2|MAPKBP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.831298828125	2	586.832057	1171.64956	-0.56371	-0.0003308	-2.8317	-0.0016618	-3.3955	-0.0019926	586.8304383801809	58.645	1.4941	55.253	54.902	56.396	-3.392					74	29	3	0	0	0	0.61983	1	3873	3873		42.864	8.6917	1	1176200			44098	4616	36458	36481	47571	47571					0.07060254648149566
PRVGYVLAL	9	Unmodified	_PRVGYVLAL_					0	0	0		ENST00000469390.5_1_1:156876157-156877908:+|nuORF;ENST00000338302.7_1_1:156876157-156878457:+|nuORF	ENST00000469390.5_1_1:156876157-156877908:+|nuORF	ENST00000469390.5_1_1:156876157-156877908:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	494.3004150390625	2	494.302927	986.591301	-5.5844	-0.0027604	1.3123	0.0006487	-4.2721	-0.0021117	494.3034903870968	153.96	1.4815	152.95	152.62	154.1	-1.0076					78	30	5	0	0	0	0.6926	1	13229	13229		20.482	1.1219	1	602630			44099	10536	36459	36482	47572	47572					0.09746941065179726
PRVHGDCRAR	10	Unmodified	_PRVHGDCRAR_					0	0	0		ENST00000588173.1_1_19:13262893-13263325:+|nuORF	ENST00000588173.1_1_19:13262893-13263325:+|nuORF	ENST00000588173.1_1_19:13262893-13263325:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8021240234375	2	583.801623	1165.58869	0.97841	0.0005712	1.3524	0.00078951	2.3308	0.0013607	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.73378	1	1380	1380		26.693	4.733	1	155970			44100	14073	36460	36483	47573	47573					0.01252162388573197
PRVIGLLRP	9	Unmodified	_PRVIGLLRP_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OvCa9_classI_Rep2	2	510.8349609375	2	510.837468	1019.66038	-0.61834	-0.00031587	-0.42904	-0.00021917	-1.0474	-0.00053504	510.8372371276748	75.208	3.0134	73.237	72.847	75.86	-1.9711					146	57	5	0	0	0	0.46377	1	6223	6223		45.952	0	1	2314200			44101	5793;36288	36461	36484	47574	47574					0.15134025084739733
PRVIMIVTD	9	Unmodified	_PRVIMIVTD_					0	0	0		nc|ENSG00000132561|O00339-3|MATN2;nc|ENSG00000132561|O00339-2|MATN2;ENSG00000132561|ENST00000254898|MATN2	nc|ENSG00000132561|O00339-3|MATN2	nc|ENSG00000132561|O00339-3|MATN2	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.81591796875	2	522.299527	1042.5845	0.0066272	3.4614E-06	0.72592	0.00037915	0.73255	0.00038261	522.298760346907	115.11	0.24719	115	114.8	115.05	-0.11777					7	4	2	0	0	0	0.027462	1	10944	10944		27.882	4.8398	1	11330			44102	4148	36462	36485	47575	47575					0.06491260122288622
PRVKTIAR	8	Unmodified	_PRVKTIAR_					0	0	0		nc|ENSG00000240891|Q0VAA5-2|PLCXD2;nc|ENSG00000240891|Q0VAA5|PLCXD2;ENSG00000240891|ENST00000636933|PLCXD2	nc|ENSG00000240891|Q0VAA5-2|PLCXD2	nc|ENSG00000240891|Q0VAA5-2|PLCXD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.7360534667969	2	470.806168	939.597784	-0.61995	-0.00029188	1.1245	0.00052943	0.50457	0.00023755	470.8062231125843	37.519	0.50903	37.519	37.205	37.714	0					17	10	2	0	0	0	0.028476	1	2065	2065		31.955	0	1	106950			44103	9346	36463	36486	47576	47576					0.12556879016551648
PRVLLGRPLFD	11	Unmodified	_PRVLLGRPLFD_					0	0	0			REV__ENST00000497693.1_1_9:37430482-37431094:+|nuORF	REV__ENST00000497693.1_1_9:37430482-37431094:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8825073242188	2	641.885147	1281.75574	-4.6434	-0.0029805	0.6524	0.00041876	-3.991	-0.0025618	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.71191	1	15463	15463		25.574	2.0514	1	543390	+		44104	25127	36464	36487	47577	47577					0.12613333485114708
PRVLLTLLY	9	Unmodified	_PRVLLTLLY_					0	0	0		ENST00000314888.9_1_9:35697397-35697580:-|nuORF	ENST00000314888.9_1_9:35697397-35697580:-|nuORF	ENST00000314888.9_1_9:35697397-35697580:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.34619140625	2	544.347335	1086.68012	2.8853	0.0015706	-3.1256	-0.0017014	-0.24034	-0.00013083	544.3454825892004	130.99	1.9125	129.51	129.16	131.07	-1.478					79	38	4	0	0	0	0.5811	1	12599	12599		34.173	2.2177	1	218490			44105	10326	36465	36488	47578	47578					0.1402435630486707
PRVLMLIRHM	10	Unmodified	_PRVLMLIRHM_					0	0	0			REV__PKHD1|p.A3983Kfs*44|1|0.16|ENSG00000170927|chr6:51619327-51619360|CAGGTACACCTGCTGAGCAGGAGCACCTGGAGCA/-|frameshift_variant;REV__PKHD1|p.P2004Hfs*49|1|0.03|ENSG00000170927|chr6:51934220-51934221|-/T|frameshift_variant	REV__PKHD1|p.A3983Kfs*44|1|0.16|ENSG00000170927|chr6:51619327-51619360|CAGGTACACCTGCTGAGCAGGAGCACCTGGAGCA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3689575195312	2	633.370295	1264.72604	-4.8823	-0.0030923	3.3026	0.0020918	-1.5797	-0.0010006	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.76627	1	13033	13033		23.042	3.939	1	765700	+		44106	21578;29299	36466	36489	47579	47579					0.10426354943751903
PRVLRGLPI	9	Unmodified	_PRVLRGLPI_					0	0	0		tr|A0A7D6ZID5|A0A7D6ZID5_9CLOTIon-translocatingoxidoreductasecomplexsubunitAOS=ClostridiumintestinaleOX=36845GN=rsxAPE=3SV=1	tr|A0A7D6ZID5|A0A7D6ZID5_9CLOTIon-translocatingoxidoreductasecomplexsubunitAOS=ClostridiumintestinaleOX=36845GN=rsxAPE=3SV=1	tr|A0A7D6ZID5|A0A7D6ZID5_9CLOTIon-translocatingoxidoreductasecomplexsubunitAOS=ClostridiumintestinaleOX=36845GN=rsxAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	510.837158203125	2	510.837468	1019.66038	-0.61834	-0.00031587	-0.42904	-0.00021917	-1.0474	-0.00053504	510.8372371276748	75.208	3.0134	73.237	72.847	75.86	-1.9711					146	57	5	0	0	0	0.14739	4	6195	6183;6195;6201;6208		85.359	19.556	1	2314200			44107	35611	36467	36490	47580;47581;47582;47583	47581					0.15134025084751102
PRVLRGLPI	9	Unmodified	_PRVLRGLPI_					0	0	0		tr|A0A7D6ZID5|A0A7D6ZID5_9CLOTIon-translocatingoxidoreductasecomplexsubunitAOS=ClostridiumintestinaleOX=36845GN=rsxAPE=3SV=1	tr|A0A7D6ZID5|A0A7D6ZID5_9CLOTIon-translocatingoxidoreductasecomplexsubunitAOS=ClostridiumintestinaleOX=36845GN=rsxAPE=3SV=1	tr|A0A7D6ZID5|A0A7D6ZID5_9CLOTIon-translocatingoxidoreductasecomplexsubunitAOS=ClostridiumintestinaleOX=36845GN=rsxAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	510.8372497558594	2	510.837468	1019.66038	-0.64389	-0.00032892	-0.22656	-0.00011574	-0.87045	-0.00044466	510.83736010292637	75.509	3.956	73.099	72.679	76.635	-2.4106					202	77	5	0	0	0	0.14739	11	3834	3827;3834;3840;3846;3852;3865;3871;3878;3884;3891;3897		85.359	19.556	1	2691000			44108	35611	36467	36490	47584;47585;47586;47587;47588;47589;47590;47591;47592;47593;47594	47585					0.15134025084751102
PRVLRGLPI	9	Unmodified	_PRVLRGLPI_					0	0	0		tr|A0A7D6ZID5|A0A7D6ZID5_9CLOTIon-translocatingoxidoreductasecomplexsubunitAOS=ClostridiumintestinaleOX=36845GN=rsxAPE=3SV=1	tr|A0A7D6ZID5|A0A7D6ZID5_9CLOTIon-translocatingoxidoreductasecomplexsubunitAOS=ClostridiumintestinaleOX=36845GN=rsxAPE=3SV=1	tr|A0A7D6ZID5|A0A7D6ZID5_9CLOTIon-translocatingoxidoreductasecomplexsubunitAOS=ClostridiumintestinaleOX=36845GN=rsxAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.8382568359375	2	510.837468	1019.66038	-0.38541	-0.00019688	-0.19758	-0.00010093	-0.58298	-0.00029781	510.8373417068363	76.39	2.3514	73.451	73.128	75.479	-2.9389					135	48	4	0	0	0	0.14739	3	6085	6073;6085;6097		85.359	19.556	1	2937500			44109	35611	36467	36490	47595;47596;47597	47596					0.15134025084751102
PRVLRGPATK	10	Unmodified	_PRVLRGPATK_					0	0	0			REV__ENST00000552679.6_1_12:113266123-113285539:+|nuORF	REV__ENST00000552679.6_1_12:113266123-113285539:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	547.340087890625	2	547.843282	1093.67201	-0.1914	-0.00010486	-1.5293	-0.00083784	-1.7207	-0.0009427	547.8423180016147	71.547	3.227	68.945	68.229	71.456	-2.6023					126	61	3	0	0	0	0.64697	1	3327	3327		36.447	2.2742	1	1856100	+		44110	27499	36468	36491	47598	47598					0.12892222108075657
PRVLTIDPTEF	11	Unmodified	_PRVLTIDPTEF_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA;COPA|p.H613Tfs*3|1|0.05|ENSG00000122218|chr1:160298986-160298986|C/-|frameshift_variant	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	OvCa9_classI_Rep2	2	644.3505249023438	2	644.350803	1286.68705	-5.2957	-0.0034123	3.5979	0.0023183	-1.6978	-0.001094	644.3530551515443	156.2	0.85168	155.97	155.64	156.49	-0.22696					67	24	4	0	0	0	0.72485	1	15890	15890		17.468	1.8262	1	86486			44111	3523	36469	36492	47599	47599					0.05517624394747145
PRVLTPTLAL	10	Unmodified	_PRVLTPTLAL_					0	0	0		ENSG00000182324|ENST00000342291|KCNJ14	ENSG00000182324|ENST00000342291|KCNJ14	ENSG00000182324|ENST00000342291|KCNJ14	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.7880859375	2	540.842416	1079.67028	-1.2695	-0.00068659	-1.8968	-0.0010259	-3.1663	-0.0017125	540.8413408934266	40.256	0.67696	37.301	37.112	37.789	-2.9541					24	12	3	0	0	0	0.026688	1	1756	1756		25.574	8.2091	1	40740			44112	7992	36470	36493	47600	47600					0.13363168299474637
PRVLTPTLAL	10	Unmodified	_PRVLTPTLAL_					0	0	0		ENSG00000182324|ENST00000342291|KCNJ14	ENSG00000182324|ENST00000342291|KCNJ14	ENSG00000182324|ENST00000342291|KCNJ14	MULTI-MATCH	OvCa9_classI_Rep2	2		2	540.842416	1079.67028	-0.74797	-0.00040453	-1.4618	-0.00079062	-2.2098	-0.0011952	540.8414809702858	40.322	0.44643	37.612	37.352	37.798	-2.7097	0.15522	0.00041608	NaN	25.574	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10295			44113	7992	36470	36493							0.13363168299474637
PRVNLGFLL	9	Unmodified	_PRVNLGFLL_					0	0	0			REV__sp|Q6SW55|UL87_HCMVMUncharacterizedproteinUL87OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL87PE=3SV=1	REV__sp|Q6SW55|UL87_HCMVMUncharacterizedproteinUL87OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL87PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	514.81591796875	2	514.816202	1027.61785	1.4409	0.00074178	-1.4048	-0.00072323	0.03603	1.8549E-05	514.8152681516877	127.8	1.4064	126.71	126.36	127.76	-1.0933					69	27	4	0	0	0	0.52083	1	10028	10028		40.573	4.9543	1	280660	+		44114	29424	36471	36494	47601	47601					0.10514629956537647
PRVPLYEVT	9	Unmodified	_PRVPLYEVT_					0	0	0		tr|A0A553SNF1|A0A553SNF1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24355PE=4SV=1	tr|A0A553SNF1|A0A553SNF1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24355PE=4SV=1	tr|A0A553SNF1|A0A553SNF1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24355PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	537.3016967773438	2	537.303124	1072.5917	-2.0429	-0.0010977	-0.98449	-0.00052897	-3.0274	-0.0016266	537.3025976508426	51.263	1.5868	48.45	48.104	49.691	-2.8129					81	31	4	0	0	0	0.56889	1	3372	3372		35.618	0	1	305260			44115	33921	36472	36495	47602	47602					0.058303159943761784
PRVPPVPKPRT	11	Unmodified	_PRVPPVPKPRT_					0	0	0		nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2;ENST00000367112.1_2_6:158500311-158517393:+|nuORF	nc|ENSG00000078269|O15056-2|SYNJ2	nc|ENSG00000078269|O15056-2|SYNJ2	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.90850830078125	3	415.259302	1242.75608	0.26695	0.00011085	2.6217	0.0010887	2.8886	0.0011995	415.2605023573163	42.582	0.21306	42.582	42.496	42.709	0					7	4	2	0	0	0	0.026132	1	2753	2753		20.315	1.3487	1	58700			44116	1591	36473	36496	47603	47603					0.14440753204985413
PRVPRSAST	9	Unmodified	_PRVPRSAST_					0	0	0		ENSG00000165970|ENST00000525748|SLC6A5;nc|ENSG00000165970|Q9Y345-3|SLC6A5	ENSG00000165970|ENST00000525748|SLC6A5	ENSG00000165970|ENST00000525748|SLC6A5	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.775146484375	2	485.775065	969.535577	-1.0285	-0.00049961	0.29808	0.0001448	-0.73039	-0.00035481	485.7752351689222	43.149	1.3869	40.142	39.801	41.188	-3.0074					74	26	5	0	0	0	0.53957	1	2053	2053		38.806	6.8513	1	1096600			44117	6622	36474	36497	47604	47604					0.04959107877573388
PRVPVLLAR	9	Unmodified	_PRVPVLLAR_					0	0	0			REV__ENST00000259006.7_2_17:61777393-61777495:-|nuORF	REV__ENST00000259006.7_2_17:61777393-61777495:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	510.8359680175781	2	510.837468	1019.66038	-0.61834	-0.00031587	-0.42904	-0.00021917	-1.0474	-0.00053504	510.8372371276748	75.208	3.0134	73.237	72.847	75.86	-1.9711					146	57	5	0	0	0	0.24951	1	6216	6216		68.787	22.835	1	2314200	+		44118	23916	36475	36498	47605	47605					0.15134025084751102
PRVPVLLAR	9	Unmodified	_PRVPVLLAR_					0	0	0			REV__ENST00000259006.7_2_17:61777393-61777495:-|nuORF	REV__ENST00000259006.7_2_17:61777393-61777495:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	510.8367614746094	2	510.837468	1019.66038	-0.64389	-0.00032892	-0.22656	-0.00011574	-0.87045	-0.00044466	510.83736010292637	75.509	3.956	73.099	72.679	76.635	-2.4106					202	77	5	0	0	0	0.33652	1	3858	3858		58.782	3.2778	1	2691000	+		44119	23916	36475	36498	47606	47606					0.15134025084751102
PRVRHGHVWL	10	Unmodified	_PRVRHGHVWL_					0	0	0		ENST00000601816.3_1_19:50364595-50365005:-|nuORF	ENST00000601816.3_1_19:50364595-50365005:-|nuORF	ENST00000601816.3_1_19:50364595-50365005:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	419.5774841308594	3	419.575624	1255.70504	0.49156	0.00020624	4.2191	0.0017702	4.7106	0.0019765	419.5773464117968	36.315	1.4463	33.466	33.189	34.635	-2.849					82	28	4	0	0	0	0.76627	1	1257	1257		21.686	4.2177	1	381670			44120	14232	36476	36499	47607	47607					0.08741848950808162
PRVRKRIY	8	Unmodified	_PRVRKRIY_					0	0	0		nc|ENSG00000119231|Q96HI0-2|SENP5;ENSG00000119231|ENST00000323460|SENP5	nc|ENSG00000119231|Q96HI0-2|SENP5	nc|ENSG00000119231|Q96HI0-2|SENP5	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.3461303710938	2	544.345992	1086.67743	2.8853	0.0015706	-0.65904	-0.00035875	2.2262	0.0012118	544.3454825892004	130.99	1.9125	129.51	129.16	131.07	-1.478					79	38	4	0	0	0	0.73288	3	12587	12565;12574;12587		35.201	1.5607	1	218490			44121	3348	36477	36500	47608;47609;47610	47610					0.13755945690559201
PRVRRYGL	8	Unmodified	_PRVRRYGL_					0	0	0		ENST00000406875.7_1_7:139416756-139477447:-|nuORF	ENST00000406875.7_1_7:139416756-139477447:-|nuORF	ENST00000406875.7_1_7:139416756-139477447:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.3003234863281	2	508.809242	1015.60393	-0.56414	-0.00028704	-3.8342	-0.0019509	-4.3984	-0.0022379	509.3084728544769	103.17	1.6737	100.97	100.62	102.3	-2.1994					80	31	4	0	0	0	0.028476	1	9406	9406		20.482	4.0087	1	389860			44122	11487	36478	36501	47611	47611					0.09675397248076933
PRVRRYGL	8	Unmodified	_PRVRRYGL_					0	0	0		ENST00000406875.7_1_7:139416756-139477447:-|nuORF	ENST00000406875.7_1_7:139416756-139477447:-|nuORF	ENST00000406875.7_1_7:139416756-139477447:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	508.809242	1015.60393	-0.66163	-0.00033664	-3.4006	-0.0017303	-4.0622	-0.0020669	508.80735850490953	102.56	1.1996	101.03	100.63	101.83	-1.5211	0.030129	0.00022237	NaN	20.482	64	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182430			44123	11487	36478	36501							0.09675397248076933
PRVRVVVQLTS	11	Unmodified	_PRVRVVVQLTS_					0	0	0			REV__ENSG00000186185|ENST00000593135|KIF18B	REV__ENSG00000186185|ENST00000593135|KIF18B	MULTI-SECPEP	OvCa9_classI_Rep3	3	626.389404296875	2	627.388054	1252.76155	-6.1843	-0.00388	-3.68	-0.0023088	-9.8643	-0.0061888	627.3855859753919	165.08	0.68175	163.67	163.41	164.09	-1.4083					38	24	2	0	0	0	0.026172	1	14398	14398		18.262	4.808	1	23110	+		44124	22563	36479	36502	47612	47612					0.1452843199679137
PRVSIPMVRI	10	Unmodified	_PRVSIPMVRI_					0	0	0		nc|ENSG00000161649|Q6UXG3-3|CD300LG;nc|ENSG00000161649|Q6UXG3-2|CD300LG;nc|ENSG00000161649|Q6UXG3-5|CD300LG;nc|ENSG00000161649|Q6UXG3-4|CD300LG;ENSG00000161649|ENST00000317310|CD300LG	nc|ENSG00000161649|Q6UXG3-3|CD300LG	nc|ENSG00000161649|Q6UXG3-3|CD300LG	MULTI-MSMS	OvCa9_classI_Rep2	2	584.355712890625	2	584.355168	1166.69578	-2.3121	-0.0013511	4.4342	0.0025912	2.1222	0.0012401	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.78463	1	14763	14763		20.947	5.3051	1	180810			44125	6134	36480	36503	47613	47613					0.1191031955024755
PRVTAVIMV	9	Unmodified	_PRVTAVIMV_					0	0	0		ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	MULTI-MSMS	OvCa9_classI_Rep2	2	493.2974548339844	2	493.296788	984.579022	3.1299	0.001544	0.74498	0.0003675	3.8749	0.0019115	493.29693905803276	26.988	0.77444	24.278	24.097	24.871	-2.7097					47	21	3	0	0	0	0.6959	1	448	448		19.36	1.0356	1	72756			44126	4144	36481	36504	47614	47614					0.08611581330501394
PRVTIILNRSN	11	Unmodified	_PRVTIILNRSN_					0	0	0			REV__ENSG00000124171|ENST00000371610|PARD6B	REV__ENSG00000124171|ENST00000371610|PARD6B	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8823852539062	2	641.883136	1281.75172	-5.3554	-0.0034376	4.4876	0.0028805	-0.86781	-0.00055703	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.70142	1	13049	13049		29.17	4.6509	1	804890	+		44127	18669	36482	36505	47615	47615					0.12211243991418996
PRVWQNSGV	9	Unmodified	_PRVWQNSGV_					0	0	0		ENST00000434735.6_1_12:109915455-109915512:+|nuORF	ENST00000434735.6_1_12:109915455-109915512:+|nuORF	ENST00000434735.6_1_12:109915455-109915512:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	521.7761840820312	2	521.775065	1041.53558	-1.226	-0.00063968	0.89274	0.00046581	-0.33323	-0.00017387	521.775453767806	59.552	1.0757	59.552	59.12	60.195	0					45	27	2	0	0	0	0.27001	1	5155	5155		66.429	0	1	4588000			44128	11848	36483	36506	47616	47616					0.016471078775794012
PRVWRLTL	8	Unmodified	_PRVWRLTL_					0	0	0			REV__ENSG00000181625|ENST00000330181|SLX1B	REV__ENSG00000181625|ENST00000330181|SLX1B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3464965820312	2	520.821818	1039.62908	2.7445	0.0014294	4.4577	0.0023217	7.2021	0.003751	520.8240952700937	130.84	0.24054	129.37	129.26	129.5	-1.4779					6	4	2	0	0	0	0.028476	1	12561	12561		47.916	7.343	1	9542.3	+		44129	19060	36484	36507	47617	47617					0.11085452050656386
PRWGWPVLQL	10	Unmodified	_PRWGWPVLQL_					0	0	0			REV__ENSG00000165724|ENST00000298585|ZMYND19	REV__ENSG00000165724|ENST00000298585|ZMYND19	MULTI-SECPEP	OvCa9_classI_Rep4_	4	627.2745361328125	2	626.353483	1250.69241	0.80829	0.00050628	1.2096	0.00075763	2.0179	0.0012639	626.3540725410755	33.913	0.54475	31.125	30.904	31.449	-2.7881					16	10	2	0	0	0	0.027253	1	931	931		14.865	8.1293	1	13930	+		44130	21111	36485	36508	47618	47618					0.0770939276790159
PRWRDLLNLFC	11	Unmodified	_PRWRDLLNLFC_					0	0	0			REV__sp|P16846|UL23_HCMVATegumentproteinUL23OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL23PE=1SV=2	REV__sp|P16846|UL23_HCMVATegumentproteinUL23OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL23PE=1SV=2	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.7722473144531	3	478.255451	1431.74452	-0.068186	-3.261E-05	1.3423	0.00064198	1.2742	0.00060937	478.2560790472642	72.536	1.1468	70.136	69.802	70.949	-2.3999					35	21	3	0	0	0	0.026101	1	5898	5898		26.75	0	1	36338	+		44131	29403	36486	36509	47619	47619					0.0459218811934079
PRWRDLLNLFC	11	Unmodified	_PRWRDLLNLFC_					0	0	0			REV__sp|P16846|UL23_HCMVATegumentproteinUL23OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL23PE=1SV=2	REV__sp|P16846|UL23_HCMVATegumentproteinUL23OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL23PE=1SV=2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.2720947265625	3	478.255451	1431.74452	-0.29199	-0.00013965	-4.4009	-0.0021047	-4.6929	-0.0022444	478.25363569170617	52.751	0.50251	49.543	49.196	49.698	-3.208					13	9	2	0	0	0	0.026174	1	3140	3140		17.167	0	1	16169	+		44132	29403	36486	36509	47620	47620					0.0459218811934079
PRWRHFLLWRR	11	Unmodified	_PRWRHFLLWRR_					0	0	0			REV__ENST00000603928.2_2_9:136890984-136891107:+|nuORF	REV__ENST00000603928.2_2_9:136890984-136891107:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.7911376953125	3	541.647894	1621.92185	0.059737	3.2357E-05	-4.4521	-0.0024115	-4.3924	-0.0023791	541.645726810052	31.374	0.43535	31.374	31.124	31.559	0					19	8	3	0	0	0	0.026277	1	1273	1273		17.833	16.414	1	38084	+		44133	28054	36487	36510	47621	47621					0.13576824504343676
PRWWAQPV	8	Unmodified	_PRWWAQPV_					0	0	0		ENST00000427993.7_3_1:100435608-100440614:+|nuORF	ENST00000427993.7_3_1:100435608-100440614:+|nuORF	ENST00000427993.7_3_1:100435608-100440614:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3404541015625	2	520.277244	1038.53993	-1.4215	-0.00073958	1.8246	0.00094928	0.40306	0.0002097	520.2783175129614	43.947	0.14705	40.94	40.842	40.989	-3.0074					4	2	2	0	0	0	0.028476	1	2134	2134		35.201	0	1	6553			44134	11766	36488	36511	47622	47622					0.022206170911204026
PRYGERKSPY	10	Unmodified	_PRYGERKSPY_					0	0	0		ENST00000509770.1_1_5:82352905-82373233:-|nuORF	ENST00000509770.1_1_5:82352905-82373233:-|nuORF	ENST00000509770.1_1_5:82352905-82373233:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	626.8270263671875	2	626.825286	1251.63602	1.4453	0.00090592	1.3717	0.00085979	2.8169	0.0017657	626.8260692292256	68.054	1.2991	65.166	64.889	66.189	-2.8873					53	25	4	0	0	0	0.64697	1	2924	2924		36.447	3.6962	1	126250			44135	12964	36489	36512	47623	47623					0.020267201405658852
PRYKHALEL	9	Unmodified	_PRYKHALEL_					0	0	0			REV__ENST00000424041.1_1_20:36073469-36073910:-|nuORF	REV__ENST00000424041.1_1_20:36073469-36073910:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.2061157226562	2	563.822015	1125.62948	2.585	0.0014575	1.8357	0.001035	4.4207	0.0024925	564.3250609649139	110.69	0.17702	110.69	110.63	110.8	0					5	3	2	0	0	0	0.027462	1	12575	12575		37.159	0	1	43039	+		44136	25638	36490	36513	47624	47624					0.07168826979818732
PRYLLLLL	8	Unmodified	_PRYLLLLL_					0	0	0			REV__ENSG00000116237|ENST00000343813|ICMT	REV__ENSG00000116237|ENST00000343813|ICMT	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.73388671875	2	500.83132	999.648088	-2.7267	-0.0013656	-0.41492	-0.00020781	-3.1416	-0.0015734	501.3302313478545	87.952	0.44893	85.349	85.079	85.528	-2.6027					10	8	2	0	0	0	0.028476	1	7474	7474		35.201	0	1	7013	+		44137	18294	36491	36514	47625	47625					0.1482498862170587
PRYSQGALEL	10	Unmodified	_PRYSQGALEL_					0	0	0			REV__ENST00000300134.7_1_12:57504946-57505147:-|nuORF	REV__ENST00000300134.7_1_12:57504946-57505147:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	567.3199462890625	2	567.301113	1132.58767	-1.7201	-0.00097579	1.021	0.0005792	-0.69909	-0.0003966	567.3016900263827	85.412	1.4364	83.921	83.057	84.493	-1.4906					37	28	2	0	0	0	0.027149	1	7294	7294		90.37	10.657	1	40081	+		44138	24231	36492	36515	47626	47626					0.026682265006456873
PRYVVLYDA	9	Unmodified	_PRYVVLYDA_					0	0	0		ENSG00000175595|ENST00000311895|ERCC4	ENSG00000175595|ENST00000311895|ERCC4	ENSG00000175595|ENST00000311895|ERCC4	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.2952270507812	2	548.295299	1094.57605	0.52053	0.00028541	-1.0206	-0.0005596	-0.50008	-0.00027419	548.2950889669573	33.486	4.8857	30.698	30.11	34.996	-2.7881					278	97	6	0	0	0	0.48324	1	925	925		44.117	3.3386	1	7055400			44139	7555	36493	36516	47627	47627					0.032540294773070855
PSAAIGEGL	9	Unmodified	_PSAAIGEGL_					0	0	0			REV__ENSG00000113790|ENST00000231887|EHHADH	REV__ENSG00000113790|ENST00000231887|EHHADH	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.23187255859375	2	407.718893	813.423233	0.49262	0.00020085	0.46542	0.00018976	0.95804	0.00039061	407.7185666751791	66.235	0.43013	66.235	66.022	66.452	0					17	10	2	0	0	0	0.027462	1	6139	6139		16.473	8.7829	1	215030	+		44140	18171	36494	36517	47628	47628					0.009058340807087006
PSAAQAEQL	9	Unmodified	_PSAAQAEQL_					0	0	0			REV__ENST00000398922.6_1_11:62433857-62434520:+|nuORF	REV__ENST00000398922.6_1_11:62433857-62434520:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	457.7518615722656	2	457.732532	913.45051	-0.42412	-0.00019413	0.17974	8.2274E-05	-0.24437	-0.00011186	457.733040926563	48.266	0.98013	45.158	44.938	45.918	-3.1077					24	18	2	0	0	0	0.027247	1	2678	2678		90.37	0	1	20394	+		44141	23297	36495	36518	47629	47629					-0.009676823789163791
PSAASAISF	9	Unmodified	_PSAASAISF_					0	0	0		nc|ENSG00000138593|Q93073-2|SECISBP2L;ENSG00000138593|ENST00000559471|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	nc|ENSG00000138593|Q93073-2|SECISBP2L	MULTI-SECPEP	OvCa9_classI_Rep2	2	425.7755126953125	2	425.718893	849.423233	-0.98065	-0.00041748	1.8755	0.00079842	0.89481	0.00038094	425.7218345024811	68.812	0.29848	66.192	66.018	66.316	-2.6203					9	5	2	0	0	0	0.027433	1	5433	5433		30.504	0	1	6750.6			44142	4694	36496	36519	47630	47630					-0.007501659192826082
PSADRASSL	9	Unmodified	_PSADRASSL_					0	0	0		nc|ENSG00000023902|Q53GL0-2|PLEKHO1;ENSG00000023902|ENST00000369124|PLEKHO1	nc|ENSG00000023902|Q53GL0-2|PLEKHO1	nc|ENSG00000023902|Q53GL0-2|PLEKHO1	MULTI-MSMS	OvCa9_classI_Rep4_	4	452.23016357421875	2	452.230156	902.445759	-0.28859	-0.00013051	-0.00085487	-3.866E-07	-0.28945	-0.0001309	452.23011189825104	43.096	1.5922	40.089	39.801	41.393	-3.0074					56	30	2	0	0	0	0.1804	1	2093	2093		79.713	7.8351	1	1124600			44143	1042	36497	36520	47631	47631					-0.009365665216591879
PSAKSSLSQIS	11	Unmodified	_PSAKSSLSQIS_					0	0	0		HIVEP3|p.N1990Tfs*198|1|0.66|ENSG00000127124|chr1:41513252-41513252|T/-|frameshift_variant;nc|ENSG00000127124|Q5T1R4-2|HIVEP3;ENSG00000127124|ENST00000372583|HIVEP3;HIVEP3|p.S1384Rfs*13|1|0.11|ENSG00000127124|chr1:41580646-41580646|A/-|frameshift_variant	HIVEP3|p.N1990Tfs*198|1|0.66|ENSG00000127124|chr1:41513252-41513252|T/-|frameshift_variant	HIVEP3|p.N1990Tfs*198|1|0.66|ENSG00000127124|chr1:41513252-41513252|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.7964477539062	2	552.798403	1103.58225	-0.066717	-3.6881E-05	4.301	0.0023776	4.2343	0.0023407	552.8003868933918	77.926	1.1123	75.11	74.536	75.649	-2.8165					36	22	2	0	0	0	0.025265	1	6209	6209		42.864	14.982	1	81412			44144	3819	36498	36521	47632	47632					0.03460502918187558
PSALAELLDL	10	Unmodified	_PSALAELLDL_					0	0	0		ENSG00000059691|ENST00000263985|GATB;ENST00000513504.1_1_4:152592328-152612815:-|nuORF	ENSG00000059691|ENST00000263985|GATB	ENSG00000059691|ENST00000263985|GATB	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.8078002929688	2	521.294965	1040.57538	-0.18475	-9.6307E-05	2.1339	0.0011124	1.9491	0.0010161	521.2956406978079	118.41	0.89227	117.38	116.79	117.68	-1.0302					31	17	4	0	0	0	0.026688	1	8873	8873		32.812	3.6629	1	42834			44145	1255	36499	36522	47633	47633					0.056711900376285485
PSALGSRKL	9	Unmodified	_PSALGSRKL_					0	0	0		ENSG00000132825|ENST00000370996|PPP1R3D	ENSG00000132825|ENST00000370996|PPP1R3D	ENSG00000132825|ENST00000370996|PPP1R3D	MULTI-MSMS	OvCa9_classI_Rep4_	4	464.7827453613281	2	464.782359	927.550165	-0.73466	-0.00034146	0.49645	0.00023074	-0.23822	-0.00011072	464.78252171693356	52.634	1.4106	49.426	49.094	50.505	-3.208					56	27	3	0	0	0	0.12515	1	3160	3160		90.37	0	1	665340			44146	4178	36500	36523	47634	47634					0.08349180025709302
PSALLGRKS	9	Unmodified	_PSALLGRKS_					0	0	0		L1M2_dup9102|chr21:15781465-15783675:+|1.9878716944661228|0.1805436335784144|3.46|428.0|21|1|sense	L1M2_dup9102|chr21:15781465-15783675:+|1.9878716944661228|0.1805436335784144|3.46|428.0|21|1|sense	L1M2_dup9102|chr21:15781465-15783675:+|1.9878716944661228|0.1805436335784144|3.46|428.0|21|1|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	464.78265380859375	2	464.782359	927.550165	-1.2842	-0.0005969	1.0625	0.00049384	-0.22172	-0.00010305	464.7827463272865	52.22	0.842	49.407	49.046	49.888	-2.8129					46	16	3	0	0	0	0.19758	1	3468	3468		76.774	0	1	262710			44147	14549	36501	36524	47635	47635					0.08349180025709302
PSAMKLLSHS	10	Unmodified	_PSAMKLLSHS_					0	0	0			REV__ENST00000459901.5_1_2:241463300-241492642:-|nuORF;REV__nc|ENSG00000144504|Q9P2S6-4|ANKMY1	REV__ENST00000459901.5_1_2:241463300-241492642:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.7979125976562	2	535.786784	1069.55902	2.45	0.0013127	-3.5484	-0.0019012	-1.0984	-0.0005885	535.7846888846104	91.603	0.54883	91.603	91.372	91.92	0					23	12	3	0	0	0	0.027056	1	9913	9913		14.865	3.3539	1	520140	+		44148	26071;19915	36502	36525	47636	47636					0.027017855998792584
PSAMSIEQI	9	Oxidation (M)	_PSAM(Oxidation (M))SIEQI_		PSAM(1)SIEQI		PSAM(88)SIEQI	0	0	1		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.P12974Lfs*4|1|0.05|ENSG00000155657|chr2:178631204-178631205|-/GTACA|frameshift_variant;TTN|p.E11597Rfs*5|1|0.5|ENSG00000155657|chr2:178651954-178651954|A/-|frameshift_variant;TTN|p.R11195Efs*5|1|0.15|ENSG00000155657|chr2:178674318-178674318|A/-|frameshift_variant;TTN|p.E9011Nfs*14|1|0.03|ENSG00000155657|chr2:178711255-178711255|T/-|frameshift_variant;TTN|p.G8550Tfs*3|1|0.05|ENSG00000155657|chr2:178714032-178714059|ATTTGTTGTCACTTGTTAGCTCTTTTCC/-|frameshift_variant;TTN|p.S7694Qfs*32|1|0.04|ENSG00000155657|chr2:178719360-178719360|G/-|frameshift_variant;TTN|p.C7689Pfs*18|1|0.03|ENSG00000155657|chr2:178719373-178719374|CA/-|frameshift_variant;TTN|p.L7641Yfs*6|1|0.07|ENSG00000155657|chr2:178719621-178719621|T/-|frameshift_variant;TTN|p.T6904Lfs*6|1|0.08|ENSG00000155657|chr2:178723439-178723439|T/-|frameshift_variant;TTN|p.V5150Afs*3|1|0.06|ENSG00000155657|chr2:178732661-178732661|A/-|frameshift_variant;TTN|p.R4157*|1|0.07|ENSG00000155657|chr2:178739814-178739815|-/C|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OvCa99_classI_Rep5	1	496.242919921875	2	496.241875	990.469197	-0.13177	-6.5389E-05	0.49425	0.00024527	0.36248	0.00017988	496.2419258467062	105.2	0.87643	105.2	104.87	105.75	0					47	19	4	0	0	0	0.13504	1	11803	11803		87.696	8.2454	1	2446100			44149	5793;36288	36503	36526	47637	47637		188			-0.026418887993600038
PSAPLARVPT	10	Unmodified	_PSAPLARVPT_					0	0	0			REV__ENST00000532314.5_1_11:57413456-57414597:-|nuORF	REV__ENST00000532314.5_1_11:57413456-57414597:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.3293762207031	2	504.795466	1007.57638	0.097942	4.9441E-05	0.41058	0.00020726	0.50852	0.0002567	504.79527580500985	71.546	1.1536	69.039	68.594	69.747	-2.5072					36	21	3	0	0	0	0.026734	1	5779	5779		24.519	0	1	68835	+		44150	27232	36504	36527	47638	47638					0.0728944919718515
PSAPPCCAR	9	Unmodified	_PSAPPCCAR_					0	0	0			REV__nc|ENSG00000020181|Q96PE1-2|ADGRA2	REV__nc|ENSG00000020181|Q96PE1-2|ADGRA2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	451.25421142578125	2	451.204573	900.394592	1.923	0.00086768	0.90902	0.00041015	2.832	0.0012778	451.2047649614712	67.957	0.24228	64.467	64.284	64.526	-3.4902					5	4	2	0	0	0	0.027392	1	5007	5007		44.117	3.3386	1	7465.9	+		44151	16539	36505	36528	47639	47639					-0.05958930091730963
PSARPGACLV	10	Unmodified	_PSARPGACLV_					0	0	0		ENST00000490483.5_3_19:36500194-36502343:-|nuORF;ENST00000490986.5_3_19:36500194-36502343:-|nuORF;ENSG00000239382|ENST00000378875|ALKBH6;nc|ENSG00000239382|Q3KRA9-2|ALKBH6	ENST00000490483.5_3_19:36500194-36502343:-|nuORF	ENST00000490483.5_3_19:36500194-36502343:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	485.7767028808594	2	485.760569	969.506586	-0.45065	-0.00021891	1.3377	0.00064982	0.88708	0.00043091	485.7614752490447	47.174	0.44512	44.464	44.291	44.737	-2.7097					13	8	2	0	0	0	0.027028	1	2853	2853		31.53	0	1	21399			44152	9327	36506	36529	47640	47640					0.020612472569268903
PSARRHWATL	10	Unmodified	_PSARRHWATL_					0	0	0			REV__ENST00000461838.5_1_13:28014569-28024229:-|nuORF	REV__ENST00000461838.5_1_13:28014569-28024229:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	597.82177734375	2	597.828163	1193.64177	-4.1469	-0.0024791	-2.9291	-0.0017511	-7.0761	-0.0042303	597.8262965638429	152.69	0.95377	152.46	152.23	153.19	-0.22696					55	20	4	0	0	0	0.74374	1	15594	15594		25.574	3.6142	1	133350	+		44153	26104	36507	36530	47641	47641					0.0526986344289071
PSARRLPLT	9	Unmodified	_PSARRLPLT_					0	0	0			REV__ENST00000571901.5_1_17:45110742-45131577:-|nuORF	REV__ENST00000571901.5_1_17:45110742-45131577:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	505.8091735839844	2	505.808908	1009.60326	-0.42662	-0.00021579	-0.33344	-0.00016866	-0.76006	-0.00038444	505.8086512781618	72.909	1.6754	70.509	70.115	71.79	-2.3999					58	31	2	0	0	0	0.42676	1	5935	5935		49.442	13.823	1	489790	+		44154	27747	36508	36531	47642	47642					0.098845578083683
PSASAHHK	8	Unmodified	_PSASAHHK_					0	0	0		ENST00000463880.1_2_3:57570154-57583081:-|nuORF;ENST00000496292.5_1_3:57569730-57583039:-|nuORF;ENST00000489843.1_1_3:57563098-57583039:-|nuORF;ENST00000303436.10_1_3:57570154-57583081:-|nuORF;ENST00000495354.1_1_3:57582336-57583081:-|nuORF	ENST00000463880.1_2_3:57570154-57583081:-|nuORF	ENST00000463880.1_2_3:57570154-57583081:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	417.7174377441406	2	417.714476	833.4144	3.1966	0.0013353	3.9756	0.0016607	7.1722	0.0029959	417.7159779052983	107.69	1.1872	107.69	107.4	108.58	0					68	27	3	0	0	0	0.59148	3	12173	12142;12173;12204		65.803	19.851	1	5233300			44155	10216	36509	36532	47643;47644;47645	47644					-0.008970947651050665
PSATPIFAPG	10	Unmodified	_PSATPIFAPG_					0	0	0		nc|ENSG00000130005|Q14353-2|GAMT;ENSG00000130005|ENST00000252288|GAMT	nc|ENSG00000130005|Q14353-2|GAMT	nc|ENSG00000130005|Q14353-2|GAMT	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.78662109375	2	479.255643	956.496732	-0.21883	-0.00010488	0.3278	0.0001571	0.10896	5.2222E-05	479.25571216571024	78.554	0.90021	76.814	76.196	77.097	-1.7398					29	17	2	0	0	0	0.026552	1	6501	6501		53.351	7.3995	1	14040			44156	15009	36510	36533	47646	47646					0.016743825231856135
PSCNADLIN	9	Unmodified	_PSCNADLIN_					0	0	0		nc|ENSG00000153956|P54289-4|CACNA2D1;nc|ENSG00000153956|P54289-5|CACNA2D1;nc|ENSG00000153956|P54289-3|CACNA2D1;ENSG00000153956|ENST00000356860|CACNA2D1;nc|ENSG00000153956|P54289|CACNA2D1	nc|ENSG00000153956|P54289-4|CACNA2D1	nc|ENSG00000153956|P54289-4|CACNA2D1	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.7946472167969	2	473.718567	945.422581	0.57723	0.00027344	-0.99567	-0.00047167	-0.41845	-0.00019823	473.71793559422065	45.837	0.35506	45.837	45.624	45.979	0					12	7	2	0	0	0	0.027462	1	3180	3180		31.53	9.5699	1	91382			44157	5704	36511	36534	47647	47647					-0.052313286306457485
PSCSDGSGL	9	Unmodified	_PSCSDGSGL_					0	0	0			REV__ENSG00000215910|ENST00000688073|C1orf167	REV__ENSG00000215910|ENST00000688073|C1orf167	MULTI-MSMS	OvCa9_classI_Rep2	2	411.6669921875	2	411.668543	821.322533	-4.0802	-0.0016797	0.072531	2.9859E-05	-4.0077	-0.0016498	411.6690234709274	161.87	1.214	161.64	161.33	162.54	-0.22696					65	23	4	0	0	0	0.6959	1	16524	16524		19.36	3.7238	1	44511	+		44158	23321	36512	36535	47648	47648					-0.0952756596443578
PSCSSLGNC	9	Unmodified	_PSCSSLGNC_					0	0	0		ENST00000515743.5_1_4:10093426-10093663:-|nuORF	ENST00000515743.5_1_4:10093426-10093663:-|nuORF	ENST00000515743.5_1_4:10093426-10093663:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	433.1719055175781	2	434.170395	866.326238	2.2577	0.00098021	-3.0655	-0.0013309	-0.80782	-0.00035073	434.16866670027275	60.806	0.20018	57.738	57.671	57.872	-3.0685					7	5	2	0	0	0	0.027462	1	2072	2072		35.618	11.416	1	4863.5			44159	13053	36513	36536	47649	47649					-0.11227219462227822
PSCSTDGAQ	9	Unmodified	_PSCSTDGAQ_					0	0	0			REV__ENST00000462137.5_1_3:50357741-50365530:-|nuORF	REV__ENST00000462137.5_1_3:50357741-50365530:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1719055175781	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.61208	1	2072	2072		30.504	0.6621	1	60065	+		44160	26109	36514	36537	47650	47650					-0.10924467452775843
PSCSTDGAQ	9	Unmodified	_PSCSTDGAQ_					0	0	0			REV__ENST00000462137.5_1_3:50357741-50365530:-|nuORF	REV__ENST00000462137.5_1_3:50357741-50365530:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1717834472656	2	433.17145	864.328346	1.9505	0.00084491	-0.84733	-0.00036704	1.1032	0.00047787	433.17100760562903	63.152	4.2639	60.118	58.202	62.466	-3.0339					141	92	2	0	0	0	0.51865	1	2419	2419		40.778	6.6056	1	38128	+		44161	26109	36514	36537	47651	47651					-0.10924467452775843
PSCWSLRRAL	10	Unmodified	_PSCWSLRRAL_					0	0	0		ENST00000473949.5_1_1:228284157-228284925:+|nuORF	ENST00000473949.5_1_1:228284157-228284925:+|nuORF	ENST00000473949.5_1_1:228284157-228284925:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	594.8237915039062	2	594.81895	1187.62335	0.5425	0.00032269	3.7931	0.0022562	4.3355	0.0025789	594.821180381397	86.951	2.3021	84.324	83.86	86.162	-2.6269					107	45	4	0	0	0	0.34811	1	7387	7387		75.043	0.78827	1	1537900			44162	12422	36515	36538	47652	47652					0.037039854767044744
PSDEAWPETLP	11	Unmodified	_PSDEAWPETLP_					0	0	0			REV__ENSG00000129450|ENST00000250360|SIGLEC9	REV__ENSG00000129450|ENST00000250360|SIGLEC9	MULTI-MSMS	OvCa99_classI_Rep5	1	621.291259765625	2	621.287868	1240.56118	1.9885	0.0012354	0.39577	0.00024589	2.3843	0.0014813	621.28815573853	107.48	4.1803	107.48	106.97	111.16	0					232	95	5	0	0	0	0.62561	1	12086	12086		25.574	0	1	27078000	+		44163	18898	36516	36539	47653	47653					-0.04947507181327637
PSDFEVIQI	9	Unmodified	_PSDFEVIQI_					0	0	0		ENSG00000140943|ENST00000343411|MBTPS1	ENSG00000140943|ENST00000343411|MBTPS1	ENSG00000140943|ENST00000343411|MBTPS1	MULTI-MSMS	OvCa9_classI_Rep2	2	524.2720947265625	2	524.27149	1046.52843	-1.2665	-0.00066397	1.0965	0.00057489	-0.16992	-8.9084E-05	524.2719353297791	119.84	3.5537	119.67	119.05	122.61	-0.17138					188	71	5	0	0	0	0.091859	4	11541	11513;11541;11554;11566		99.375	5.5309	1	902400			44164	4880	36517	36540	47654;47655;47656;47657	47655					0.007023304865015234
PSDFEVIQI	9	Unmodified	_PSDFEVIQI_					0	0	0		ENSG00000140943|ENST00000343411|MBTPS1	ENSG00000140943|ENST00000343411|MBTPS1	ENSG00000140943|ENST00000343411|MBTPS1	MULTI-MSMS	OvCa9_classI_Rep3	3	524.2719116210938	2	524.27149	1046.52843	0.85689	0.00044924	-1.2618	-0.00066151	-0.40488	-0.00021227	524.2706948277186	120.46	3.5918	119.43	118.68	122.27	-1.0271					167	69	5	0	0	0	0.11471	3	9235	9166;9228;9235		93.195	15.811	1	1392700			44165	4880	36517	36540	47658;47659;47660	47660					0.007023304865015234
PSDISYMPSY	10	Unmodified	_PSDISYMPSY_					0	0	0		nc|ENSG00000151702|Q01543-2|FLI1;nc|ENSG00000151702|Q01543-3|FLI1;ENSG00000151702|ENST00000527786|FLI1;ENST00000528790.1_1_11:128676959-128680880:+|nuORF;nc|ENSG00000151702|Q01543-4|FLI1	nc|ENSG00000151702|Q01543-2|FLI1	nc|ENSG00000151702|Q01543-2|FLI1	MULTI-MSMS	OvCa99_classI_Rep5	1	580.2545166015625	2	580.25244	1158.49033	0.66784	0.00038752	2.5323	0.0014694	3.2001	0.0018569	580.2537259557421	139.19	1.0923	139.19	138.88	139.97	0					54	22	3	0	0	0	0.72319	1	16243	16243		27.882	1.8189	1	187300			44166	5577	36518	36541	47661	47661					-0.08257923490486974
PSDLDLLL	8	Unmodified	_PSDLDLLL_					0	0	0		ENSG00000130193|ENST00000336138|THEM6	ENSG00000130193|ENST00000336138|THEM6	ENSG00000130193|ENST00000336138|THEM6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.290283203125	2	443.250026	884.485499	-0.20787	-9.2136E-05	1.5887	0.00070417	1.3808	0.00061203	443.2494922693369	68.986	0.19426	65.496	65.362	65.556	-3.4902					5	3	2	0	0	0	0.028476	1	5133	5133		19.36	0	1	8115.9			44167	3966	36519	36542	47662	47662					0.03863560429056179
PSDMPLLEL	9	Unmodified	_PSDMPLLEL_					0	0	0		nc|ENSG00000100325|Q9H1I8-2|ASCC2;ENST00000458594.5_1_22:30197094-30223519:-|nuORF;nc|ENSG00000100325|Q9H1I8-3|ASCC2;ENSG00000100325|ENST00000307790|ASCC2	nc|ENSG00000100325|Q9H1I8-2|ASCC2	nc|ENSG00000100325|Q9H1I8-2|ASCC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7633361816406	2	507.762443	1013.51033	-0.36461	-0.00018514	1.0451	0.00053065	0.68047	0.00034552	507.76291546317833	116.38	1.6525	115.02	114.75	116.4	-1.3645					79	31	4	0	0	0	0.55588	1	10874	10874		37.159	2.9866	1	272140			44168	2046	36520	36543	47663	47663					0.004118722401244668
PSDRLSCG	8	Unmodified	_PSDRLSCG_					0	0	0			REV__chr2:176163153-176164073|225|20.47|0.13|7.35|+|2|None,HOXD3|1	REV__chr2:176163153-176164073|225|20.47|0.13|7.35|+|2|None,HOXD3|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	416.9036865234375	2	417.692352	833.370152	0.10309	4.3061E-05	2.5329	0.001058	2.636	0.001101	417.6932262329094	35.962	0.45844	35.962	35.799	36.257	0					14	9	3	0	0	0	0.028476	1	1876	1876		31.955	0	1	85105	+		44169	15992	36521	36544	47664	47664					-0.053198669735934345
PSEAPTEVGVK	11	Unmodified	_PSEAPTEVGVK_					0	0	0		ENSG00000018236|ENST00000551295|CNTN1;nc|ENSG00000018236|Q12860-2|CNTN1	ENSG00000018236|ENST00000551295|CNTN1	ENSG00000018236|ENST00000551295|CNTN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.2969970703125	2	557.292953	1112.57135	0.67214	0.00037458	4.2219	0.0023528	4.894	0.0027274	557.2952302846592	142.74	3.2015	141.29	140.1	143.3	-1.4427					104	61	2	0	0	0	0.69808	1	13952	13952		30.318	6.115	1	35102			44170	1011	36522	36545	47665	47665					0.01957100543904744
PSEELSSRL	9	Unmodified	_PSEELSSRL_					0	0	0			REV__ENSG00000213920|ENST00000288087|MDP1	REV__ENSG00000213920|ENST00000288087|MDP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.8016662597656	2	509.264196	1016.51384	1.017	0.00051795	-2.0798	-0.0010592	-1.0628	-0.00054124	509.7646474908629	96.956	0.24138	94.53	94.42	94.661	-2.4256					6	4	2	0	0	0	0.027462	1	8572	8572		47.657	1.6851	1	17338	+		44171	23275	36523	36546	47666	47666					0.006242583383254896
PSELLSLAI	9	Unmodified	_PSELLSLAI_					0	0	0			REV__nc|ENSG00000048028|Q96RU2-2|USP28	REV__nc|ENSG00000048028|Q96RU2-2|USP28	MULTI-SECPEP	OvCa9_classI_Rep2	2	471.2613525390625	2	471.778951	941.543348	0.82481	0.00038913	-3.4189	-0.001613	-2.5941	-0.0012238	471.7773385546361	42.364	0.49362	39.654	39.473	39.966	-2.7097					11	9	2	0	0	0	0.027462	1	2308	2308		38.806	5.2906	1	12245	+		44172	16665	36524	36547	47667	47667					0.07023822354460663
PSERHNKW	8	Unmodified	_PSERHNKW_					0	0	0			REV__ENST00000269389.7_1_17:80279208-80279355:-|nuORF	REV__ENST00000269389.7_1_17:80279208-80279355:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.7783203125	2	527.264865	1052.51518	-0.51093	-0.0002694	0.72746	0.00038356	0.21653	0.00011417	527.2651363510109	47.671	0.34517	47.671	47.595	47.941	0					12	7	2	0	0	0	0.028476	1	3460	3460		24.203	8.5609	1	156800	+		44173	24064	36525	36548	47668	47668					-0.008980627822666065
PSESGSCAQ	9	Unmodified	_PSESGSCAQ_					0	0	0			REV__nc|ENSG00000116990|P12524-2|MYCL	REV__nc|ENSG00000116990|P12524-2|MYCL	MULTI-MSMS	OvCa9_classI_Rep3	3	433.17156982421875	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.59259	3	1614	1349;1440;1614		32.812	7.4612	1	60065	+		44174	18330	36526	36549	47669;47670;47671	47671					-0.10924467452787212
PSESRQVL	8	Unmodified	_PSESRQVL_					0	0	0		ENSG00000168348|ENST00000307169|INSM2	ENSG00000168348|ENST00000307169|INSM2	ENSG00000168348|ENST00000307169|INSM2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.28387451171875	2	458.248349	914.482145	-0.46535	-0.00021325	-1.5659	-0.00071758	-2.0313	-0.00093082	458.24696149938626	51.494	0.75402	48.321	47.972	48.726	-3.1734					20	14	2	0	0	0	0.028476	1	3017	3017		60.294	6.9425	1	36050			44175	6894	36527	36550	47672	47672					0.021483103750597365
PSETKLRI	8	Unmodified	_PSETKLRI_					0	0	0		tr|A0A553SLH0|A0A553SLH0_NIACIDUF4397domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20595PE=4SV=1	tr|A0A553SLH0|A0A553SLH0_NIACIDUF4397domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20595PE=4SV=1	tr|A0A553SLH0|A0A553SLH0_NIACIDUF4397domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20595PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.3288879394531	2	472.282192	942.549831	-0.20236	-9.5571E-05	-4.4268	-0.0020907	-4.6292	-0.0021863	472.27975208796005	35.486	0.51419	35.486	35.052	35.566	0					14	10	2	0	0	0	0.028476	1	1777	1777		45.952	10.334	1	198030			44176	33721	36528	36551	47673	47673					0.07625760305836593
PSFASVPLF	9	Unmodified	_PSFASVPLF_					0	0	0			REV__ENST00000550161.5_1_12:48359650-48359713:+|nuORF	REV__ENST00000550161.5_1_12:48359650-48359713:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	482.7598876953125	2	482.760561	963.506569	2.1391	0.0010327	-3.0117	-0.001454	-0.87261	-0.00042126	482.7588804234167	57.803	3.1186	54.676	53.456	56.575	-3.1264					158	85	3	0	0	0	0.44294	1	1769	1769		47.916	5.4411	1	89902	+		44177	27465	36529	36552	47674	47674					0.02335570528578046
PSFLTDQEL	9	Unmodified	_PSFLTDQEL_					0	0	0		nc|ENSG00000143437|P27540-2|ARNT;nc|ENSG00000143437|P27540-3|ARNT;nc|ENSG00000143437|P27540-4|ARNT;ENSG00000143437|ENST00000358595|ARNT	nc|ENSG00000143437|P27540-2|ARNT	nc|ENSG00000143437|P27540-2|ARNT	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.8060913085938	2	525.261122	1048.50769	-1.1642	-0.00061152	-1.3428	-0.00070534	-2.5071	-0.0013169	525.2602492022044	117.35	1.4865	117.22	116.72	118.2	-0.12869					49	29	3	0	0	0	0.02744	1	11236	11236		52.937	10.541	1	55892			44178	5054	36530	36553	47675	47675					-0.014622598931964603
PSFRAVVRLSL	11	Unmodified	_PSFRAVVRLSL_					0	0	0		ENST00000543150.1_1_11:94964807-94964927:+|nuORF	ENST00000543150.1_1_11:94964807-94964927:+|nuORF	ENST00000543150.1_1_11:94964807-94964927:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	415.5869445800781	3	415.587307	1243.74009	-0.52837	-0.00021958	0.25004	0.00010392	-0.27832	-0.00011567	415.5871992361253	53.239	1.788	50.425	50.084	51.872	-2.8139					82	35	4	0	0	0	0.40612	1	3587	3587		60.691	12.089	1	237460			44179	13488	36531	36554	47676	47676					0.12797046968080394
PSFRAVVRLSL	11	Unmodified	_PSFRAVVRLSL_					0	0	0		ENST00000543150.1_1_11:94964807-94964927:+|nuORF	ENST00000543150.1_1_11:94964807-94964927:+|nuORF	ENST00000543150.1_1_11:94964807-94964927:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	415.587307	1243.74009	-0.80554	-0.00033477	1.0901	0.00045302	0.28453	0.00011825	415.58767269205106	53.721	1.1247	50.474	50.109	51.234	-3.2474	0.024182	0.0004572	NaN	60.691	62	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255380			44180	13488	36531	36554							0.12797046968080394
PSGALLMLI	9	Unmodified	_PSGALLMLI_					0	0	0			REV__ENST00000488337.5_1_11:116714606-116714729:-|nuORF	REV__ENST00000488337.5_1_11:116714606-116714729:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.2301025390625	2	457.772614	913.530675	-0.083321	-3.8142E-05	1.5436	0.00070663	1.4603	0.00066848	457.77334447147973	67.569	0.31444	67.569	67.408	67.723	0					12	7	2	0	0	0	0.027255	1	6347	6347		47.916	0	1	282940	+		44181	26618	36532	36555	47677	47677					0.07045087690585206
PSGDLMQLNP	10	Unmodified	_PSGDLMQLNP_					0	0	0			REV__ENSG00000131951|ENST00000570145|LRRC9	REV__ENSG00000131951|ENST00000570145|LRRC9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.814697265625	2	536.260599	1070.50665	0.20077	0.00010767	-0.033222	-1.7816E-05	0.16755	8.9851E-05	536.2610282457254	97.232	0.4023	94.825	94.582	94.985	-2.4073					10	7	2	0	0	0	0.026734	1	8578	8578		39.253	3.6345	1	8008.1	+		44182	19044	36533	36556	47678	47678					-0.025787975337152602
PSGDLMQLNP	10	Unmodified	_PSGDLMQLNP_					0	0	0			REV__ENSG00000131951|ENST00000570145|LRRC9	REV__ENSG00000131951|ENST00000570145|LRRC9	MULTI-MATCH	OvCa99_classI_Rep5	1		2	536.260599	1070.50665	2.4802	0.00133	-5.04	-0.0027027	-2.5598	-0.0013727	536.2578469659807	94.783	0.34439	94.783	94.604	94.949	0	-0.021016	-0.0012527	NaN	67.494	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	237690	+		44183	19044	36533	36556							-0.025787975337152602
PSGFDTKII	9	Unmodified	_PSGFDTKII_					0	0	0			REV__nc|ENSG00000081237|P08575-4|PTPRC	REV__nc|ENSG00000081237|P08575-4|PTPRC	MULTI-SECPEP	OvCa9_classI_Rep3	3	488.81353759765625	2	489.26875	976.522947	-1.1417	-0.00055861	0.96032	0.00046986	-0.1814	-8.8751E-05	489.269133861033	94.33	0.40713	92.435	92.204	92.612	-1.8956					10	7	2	0	0	0	0.027462	1	6100	6100		6.7355	0	1	19935	+		44184	17068	36534	36557	47679	47679					0.033746516946507654
PSGFRASAL	9	Unmodified	_PSGFRASAL_					0	0	0		DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	453.25750732421875	2	453.245609	904.476666	0.52546	0.00023816	-0.58112	-0.00026339	-0.05566	-2.5228E-05	453.24522254269874	62.089	0.97374	58.632	58.382	59.356	-3.4577					43	19	3	0	0	0	0.027433	1	4367	4367		51.335	0	1	110050			44185	768	36535	36558	47680	47680					0.020606315832196742
PSGGVVFSI	9	Unmodified	_PSGGVVFSI_					0	0	0			REV__tr|A0A553SGY1|A0A553SGY1_NIACIQuinoloxidasesubunit1OS=NialliacirculansOX=1397GN=qoxBPE=3SV=1	REV__tr|A0A553SGY1|A0A553SGY1_NIACIQuinoloxidasesubunit1OS=NialliacirculansOX=1397GN=qoxBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	431.5677490234375	2	431.737086	861.459619	0.043915	1.896E-05	3.3892	0.0014633	3.4331	0.0014822	431.7384772660913	73.456	1.1451	70.06	69.785	70.93	-3.3961					30	23	2	0	0	0	0.027433	1	5757	5757		19.997	4.355	1	61212	+		44186	29749	36536	36559	47681	47681					0.023347109774249475
PSGKPSSPVE	10	Unmodified	_PSGKPSSPVE_					0	0	0		ENSG00000049283|ENST00000268933|EPN3;ENST00000512379.5_1_17:48610205-48619515:+|nuORF	ENSG00000049283|ENST00000268933|EPN3	ENSG00000049283|ENST00000268933|EPN3	MULTI-SECPEP	OvCa9_classI_Rep3	3	491.8057861328125	2	492.753464	983.492375	-0.65796	-0.00032421	-2.1973	-0.0010827	-2.8552	-0.0014069	492.75226709418797	98.046	0.41013	96.287	96.11	96.52	-1.7595					11	7	2	0	0	0	0.026734	1	6517	6517		24.519	4.5224	1	9617.2			44187	1167	36537	36560	47682	47682					-3.126690376120678E-05
PSGKRQCK	8	Unmodified	_PSGKRQCK_					0	0	0		nc|ENSG00000291031|Q8N888|BCORP1;ENST00000441139.5_1_Y:21628916-21635881:-|nuORF	nc|ENSG00000291031|Q8N888|BCORP1	nc|ENSG00000291031|Q8N888|BCORP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	452.9453430175781	2	452.245086	902.47562	-0.30233	-0.00013673	1.8354	0.00083004	1.5331	0.00069332	452.2465088573388	40.146	0.23126	40.146	40.016	40.247	0					6	4	2	0	0	0	0.028476	1	2420	2420		7.1934	0	1	14154			44188	11928	36538	36561	47683	47683					0.020480939426761324
PSGLDQPYDP	10	Unmodified	_PSGLDQPYDP_					0	0	0			REV__ENST00000511262.5_1_3:130745788-130746813:+|nuORF	REV__ENST00000511262.5_1_3:130745788-130746813:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.764892578125	2	544.748379	1087.4822	-0.45134	-0.00024586	-1.1551	-0.00062922	-1.6064	-0.00087509	544.7481683344841	47.97	0.39235	47.97	47.812	48.204	0					12	8	2	0	0	0	0.026891	1	3485	3485		31.53	0	1	116710	+		44189	26959	36539	36562	47684	47684					-0.05803734415621875
PSGLHYGTSM	10	Unmodified	_PSGLHYGTSM_					0	0	0			REV__nc|ENSG00000132849|Q8NI35|PATJ	REV__nc|ENSG00000132849|Q8NI35|PATJ	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.2692260742188	2	525.239667	1048.46478	-1.2604	-0.00066201	3.0284	0.0015906	1.768	0.00092861	525.241202746473	69.436	0.48849	65.955	65.713	66.201	-3.4812					13	9	2	0	0	0	0.02661	1	5203	5203		49.442	8.6634	1	44622	+		44190	19108	36540	36563	47685	47685					-0.05751353222262878
PSGLIWPN	8	Unmodified	_PSGLIWPN_					0	0	0			REV__tr|A0A7D6VRI8|A0A7D6VRI8_9CLOTPutrescineaminotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02355PE=3SV=1	REV__tr|A0A7D6VRI8|A0A7D6VRI8_9CLOTPutrescineaminotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02355PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	442.23583984375	2	442.237253	882.459953	0.75103	0.00033213	-4.4177	-0.0019537	-3.6667	-0.0016215	442.23493070967663	48.856	0.70673	48.856	48.412	49.119	0					31	15	3	0	0	0	0.7224	1	3625	3625		38.806	5.2906	1	521310	+		44191	31421	36541	36564	47686	47686					0.014021306972722414
PSGLIWPN	8	Unmodified	_PSGLIWPN_					0	0	0			REV__tr|A0A7D6VRI8|A0A7D6VRI8_9CLOTPutrescineaminotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02355PE=3SV=1	REV__tr|A0A7D6VRI8|A0A7D6VRI8_9CLOTPutrescineaminotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02355PE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	442.237253	882.459953	0.75103	0.00033213	-4.4177	-0.0019537	-3.6667	-0.0016215	442.23493070967663	48.856	0.70673	48.856	48.412	49.119	0	0	0	NaN	38.806	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	521310	+		44192	31421	36541	36564							0.014021306972722414
PSGLRSSGPE	10	Unmodified	_PSGLRSSGPE_					0	0	0			REV__nc|ENSG00000169220|O43566-5|RGS14	REV__nc|ENSG00000169220|O43566-5|RGS14	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.8319091796875	2	493.748713	985.482873	2.4164	0.0011931	-1.1663	-0.00057586	1.2501	0.00061723	493.74952161329514	75.733	0.62254	75.733	75.251	75.874	0					19	15	2	0	0	0	0.026915	1	7531	7531		20.947	0	1	194450	+		44193	21444	36542	36565	47687	47687					-0.010448949758938397
PSGPFRKELS	10	Unmodified	_PSGPFRKELS_					0	0	0			REV__ENSG00000064687|ENST00000263094|ABCA7	REV__ENSG00000064687|ENST00000263094|ABCA7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.7801513671875	2	559.303655	1116.59276	0.33501	0.00018737	-3.4912	-0.0019526	-3.1562	-0.0017653	559.3020227064161	82.457	0.441	79.774	79.587	80.028	-2.683					13	8	2	0	0	0	0.026906	1	6844	6844		41.427	19.467	1	26246	+		44194	16774	36543	36566	47688	47688					0.03912530363277256
PSGPPRRRAL	10	Unmodified	_PSGPPRRRAL_					0	0	0			REV__ENST00000399413.3_1_17:7983259-7983811:+|nuORF	REV__ENST00000399413.3_1_17:7983259-7983811:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8302001953125	2	553.830706	1105.64686	0.13278	7.3535E-05	-1.033	-0.00057208	-0.90018	-0.00049855	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.81992	1	13833	13833		16.473	0.83134	1	400120	+		44195	25389	36544	36567	47689	47689					0.09826167305504896
PSGQRPEGR	9	Unmodified	_PSGQRPEGR_					0	0	0		ENST00000312143.11_1_12:108687434-108732991:-|nuORF	ENST00000312143.11_1_12:108687434-108732991:-|nuORF	ENST00000312143.11_1_12:108687434-108732991:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.7830810546875	2	492.254497	982.494441	-0.74665	-0.00036754	-1.8869	-0.00092882	-2.6335	-0.0012964	492.2534065107043	71.711	1.5601	68.255	67.874	69.434	-3.4563					42	31	3	0	0	0	0.027447	1	5521	5521		31.53	0	1	130510			44196	10303	36545	36568	47690	47690					0.0024934683809760827
PSGQRQPD	8	Unmodified	_PSGQRQPD_					0	0	0		ENST00000366584.8_1_1:236686911-236687247:+|nuORF	ENST00000366584.8_1_1:236686911-236687247:+|nuORF	ENST00000366584.8_1_1:236686911-236687247:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	443.7093505859375	2	442.714673	883.414794	-0.85423	-0.00037818	0.052353	2.3178E-05	-0.80187	-0.000355	442.7146888114019	93.614	0.76039	91.653	91.378	92.138	-1.9617					18	14	2	0	0	0	0.028476	1	5996	5996		30.504	0	1	32949			44197	10821	36546	36569	47691	47691					-0.031577198359059366
PSGRMAELLP	10	Unmodified	_PSGRMAELLP_					0	0	0		ENST00000563591.5_1_16:28858025-28877416:+|nuORF	ENST00000563591.5_1_16:28858025-28877416:+|nuORF	ENST00000563591.5_1_16:28858025-28877416:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	535.814453125	2	535.786784	1069.55902	0.15372	8.2363E-05	-0.070181	-3.7602E-05	0.083544	4.4762E-05	535.7867719186709	96.061	1.1015	94.233	93.83	94.931	-1.8286					29	21	2	0	0	0	0.026734	1	6332	6332		24.519	0	1	66493			44198	13787	36547	36570	47692	47692					0.02701785599856521
PSGSNPLASV	10	Unmodified	_PSGSNPLASV_					0	0	0			REV__ENST00000497232.5_1_2:74702580-74708169:-|nuORF	REV__ENST00000497232.5_1_2:74702580-74708169:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.796875	2	464.740357	927.46616	1.7266	0.00080241	-0.27085	-0.00012587	1.4557	0.00067653	464.74030866377655	83.011	0.72291	83.011	82.781	83.504	0					30	16	3	0	0	0	0.026906	1	8605	8605		20.837	9.3261	1	1025500	+		44199	26771	36548	36571	47693	47693					-0.0004739586186133238
PSGVAVFKVIR	11	Unmodified	_PSGVAVFKVIR_					0	0	0			REV__ENSG00000154143|ENST00000284288|PANX3	REV__ENSG00000154143|ENST00000284288|PANX3	MULTI-SECPEP	OvCa9_classI_Rep3	3	587.8154907226562	2	586.861141	1171.70773	-1.7501	-0.0010271	1.3632	0.00079999	-0.38696	-0.00022709	586.8618096896993	98.455	1.0844	96.696	96.365	97.45	-1.7595					42	20	3	0	0	0	0.02605	1	6661	6661		30.318	18.807	1	83479	+		44200	20361	36549	36572	47694	47694					0.12874259565069224
PSGVAVFKVIR	11	Unmodified	_PSGVAVFKVIR_					0	0	0			REV__ENSG00000154143|ENST00000284288|PANX3	REV__ENSG00000154143|ENST00000284288|PANX3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	586.861141	1171.70773	-0.77987	-0.00045768	0.45168	0.00026507	-0.32819	-0.0001926	586.8612539029565	99.05	0.7785	96.725	96.433	97.212	-2.3253	0.014555	-0.00058153	NaN	23.523	36	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51694	+		44201	20361	36549	36572							0.12874259565069224
PSGVINVLIQ	10	Unmodified	_PSGVINVLIQ_					0	0	0		tr|A0A553SK10|A0A553SK10_NIACIReplicationinitiationandmembraneattachmentproteinOS=NialliacirculansOX=1397GN=CEQ21_17900PE=4SV=1	tr|A0A553SK10|A0A553SK10_NIACIReplicationinitiationandmembraneattachmentproteinOS=NialliacirculansOX=1397GN=CEQ21_17900PE=4SV=1	tr|A0A553SK10|A0A553SK10_NIACIReplicationinitiationandmembraneattachmentproteinOS=NialliacirculansOX=1397GN=CEQ21_17900PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.2671508789062	2	520.310949	1038.60735	0.021465	1.1168E-05	-0.65718	-0.00034194	-0.63572	-0.00033077	520.3103500538933	89.549	3.2701	86.974	86.214	89.484	-2.575					110	64	2	0	0	0	0.026734	1	7623	7623		31.53	0	1	303330			44202	33564	36550	36573	47695	47695					0.08958602511438585
PSGVLRSTSHK	11	Unmodified	_PSGVLRSTSHK_					0	0	0			REV__tr|A0A553SHE0|A0A553SHE0_NIACIATP-dependentClpproteaseATP-bindingsubunitOS=NialliacirculansOX=1397GN=CEQ21_12640PE=3SV=1	REV__tr|A0A553SHE0|A0A553SHE0_NIACIATP-dependentClpproteaseATP-bindingsubunitOS=NialliacirculansOX=1397GN=CEQ21_12640PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.7876586914062	2	584.825286	1167.63602	0.99587	0.00058241	4.3023	0.0025161	5.2982	0.0030985	584.827342950938	124.7	0.46507	124.7	124.42	124.89	0					11	9	2	0	0	0	0.025541	1	14383	14383		53.089	0	1	51379	+		44203	29793	36551	36574	47696	47696					0.058907201405418164
PSGWVRRYNSE	11	Unmodified	_PSGWVRRYNSE_					0	0	0			REV__nc|ENSG00000135506|Q13438-8|OS9	REV__nc|ENSG00000135506|Q13438-8|OS9	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.5844421386719	3	450.889825	1349.64765	0.21236	9.575E-05	-3.2516	-0.0014661	-3.0392	-0.0013704	450.8881773060991	52.432	0.70098	52.432	52.127	52.828	0					29	15	4	0	0	0	0.025767	1	4076	4076		9.2118	0	1	333240	+		44204	19294	36552	36575	47697	47697					-0.013190828361075546
PSHFLLQVL	9	Unmodified	_PSHFLLQVL_					0	0	0		ENST00000412733.1_X:151869075-151869150:+|nuORF;ENST00000417212.1_X:151936326-151938209:-|nuORF	ENST00000412733.1_X:151869075-151869150:+|nuORF	ENST00000412733.1_X:151869075-151869150:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2859497070312	2	527.30821	1052.60187	-0.42759	-0.00022547	1.5576	0.00082135	1.13	0.00059588	527.3088247074942	51.525	0.49768	51.525	51.291	51.788	0					25	11	4	0	0	0	0.027462	1	3976	3976		29.15	0	1	2781500			44205	11552	36553	36576	47698	47698					0.07766923719623264
PSHIKVQLNRY	11	Unmodified	_PSHIKVQLNRY_					0	0	0			REV__ENST00000471172.1_1_10:112590820-112591150:+|nuORF	REV__ENST00000471172.1_1_10:112590820-112591150:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.2491149902344	3	452.257849	1353.75172	-0.035384	-1.6003E-05	1.6547	0.00074837	1.6194	0.00073237	452.2574323451675	53.245	1.3097	50.037	49.349	50.659	-3.208					64	25	4	0	0	0	0.025668	1	3201	3201		42.338	17.27	1	60872	+		44206	26272	36554	36577	47699	47699					0.08899243991436379
PSHKGIAAP	9	Unmodified	_PSHKGIAAP_					0	0	0		ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	ENSG00000104427|ENST00000263849|ZC2HC1A	MULTI-MSMS	OvCa9_classI_Rep4_	4	439.24822998046875	2	439.248152	876.481751	-0.22416	-9.8464E-05	-0.0026512	-1.1645E-06	-0.22682	-9.9628E-05	439.24807436031745	51.881	2.0555	48.707	47.872	49.928	-3.1734					117	40	4	0	0	0	0.42676	1	3068	3068		49.442	1.7842	1	1269500			44207	2375	36555	36578	47700	47700					0.03856935445844556
PSIEHCAKV	9	Unmodified	_PSIEHCAKV_					0	0	0			REV__tr|A0A553SLP1|A0A553SLP1_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_21020PE=3SV=1	REV__tr|A0A553SLP1|A0A553SLP1_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_21020PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	491.78179931640625	2	492.252577	982.490601	0.99249	0.00048855	-0.76061	-0.00037441	0.23187	0.00011414	492.25201217785843	70.763	1.3979	68.192	67.765	69.163	-2.5707					38	26	2	0	0	0	0.027455	1	5675	5675		60.972	13.056	1	49638	+		44208	30245	36556	36579	47701	47701					-0.0013445897998280998
PSIKEIKT	8	Unmodified	_PSIKEIKT_					0	0	0		ENSG00000275835|ENST00000615383|TUBGCP5;nc|ENSG00000275835|Q96RT8-2|TUBGCP5;TUBGCP5|p.S675Lfs*14|1|0.04|ENSG00000275835|chr15:23010066-23010067|-/CTTGCTCTGTCGCCCAGGCTGGAGTGCAG|frameshift_variant	ENSG00000275835|ENST00000615383|TUBGCP5	ENSG00000275835|ENST00000615383|TUBGCP5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.2410583496094	2	458.279118	914.543683	-0.84368	-0.00038664	0.24133	0.0001106	-0.60235	-0.00027605	458.2790001522685	53.279	0.5081	50.071	49.795	50.303	-3.208					15	9	2	0	0	0	0.028476	1	3248	3248		23.042	4.7181	1	32174			44209	9575	36557	36580	47702	47702					0.08299242074338053
PSILPKLIE	9	Unmodified	_PSILPKLIE_					0	0	0			REV__TCP11|p.T488P|1|0.28|ENSG00000124678|chr6:35118319-35118319|T/G|missense_variant	REV__TCP11|p.T488P|1|0.28|ENSG00000124678|chr6:35118319-35118319|T/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.3163146972656	2	505.318243	1008.62193	0.65545	0.00033121	1.6616	0.00083965	2.3171	0.0011709	505.3190241034936	159.73	0.28918	159.73	159.62	159.91	0					6	5	2	0	0	0	0.027462	1	18727	18727		20.947	0	1	13743	+		44210	29488	36558	36581	47703	47703					0.11796674659558448
PSIRSLNLL	9	Unmodified	_PSIRSLNLL_					0	0	0		ENST00000436261.5_2_3:44541088-44541325:-|nuORF	ENST00000436261.5_2_3:44541088-44541325:-|nuORF	ENST00000436261.5_2_3:44541088-44541325:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	506.81182861328125	2	506.811116	1011.60768	-1.285	-0.00065125	-0.29635	-0.00015019	-1.5813	-0.00080144	506.8109472666925	100.58	3.0909	98.975	98.659	101.75	-1.6053					152	59	4	0	0	0	0.13504	1	6880	6880		87.696	2.337	1	2966100			44211	11874	36559	36582	47704	47704					0.10234022231270501
PSITRLHGK	9	Unmodified	_PSITRLHGK_					0	0	0			REV__HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|179|3|anti-sense	REV__HUERS-P1-int_dup332|chr11:14173965-14176863:-|1.0998466405592555|0.013893236758844|6.31|420.0|179|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	504.8004150390625	2	504.801083	1007.58761	-1.3473	-0.00068012	1.0581	0.00053415	-0.28917	-0.00014597	504.80145583104496	39.099	1.0401	36.39	36.112	37.152	-2.7097					52	20	4	0	0	0	0.53483	1	1878	1878		39.253	1.4413	1	219820	+		44212	28292	36560	36583	47705	47705					0.08412271291331308
PSKITLQNDFV	11	Unmodified	_PSKITLQNDFV_					0	0	0			REV__ENSG00000094804|ENST00000209728|CDC6	REV__ENSG00000094804|ENST00000209728|CDC6	MULTI-MSMS	OvCa99_classI_Rep5	1	421.2315979003906	3	421.231077	1260.6714	-0.28888	-0.00012169	1.0519	0.00044307	0.76297	0.00032139	421.2313880910111	24.891	3.0554	24.891	24.436	27.491	0					121	60	4	0	0	0	0.71498	1	514	514		16.53	0.6092	1	303820	+		44213	17277	36561	36584	47706	47706					0.0514933787769678
PSKKHSIVV	9	Unmodified	_PSKKHSIVV_					0	0	0		tr|A0A553SML9|A0A553SML9_NIACISRPBCCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_22830PE=4SV=1	tr|A0A553SML9|A0A553SML9_NIACISRPBCCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_22830PE=4SV=1	tr|A0A553SML9|A0A553SML9_NIACISRPBCCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_22830PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	497.8057556152344	2	497.805834	993.597115	-0.047348	-2.357E-05	-0.11092	-5.5215E-05	-0.15827	-7.8785E-05	497.8055687133873	31.271	0.58093	31.271	31.027	31.608	0					26	11	4	0	0	0	0.50149	1	1276	1276		42.396	1.618	1	275160			44214	33847	36562	36585	47707	47707					0.10006039576853709
PSKLDSGKEP	10	Unmodified	_PSKLDSGKEP_					0	0	0		ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	ENST00000378770.1_1_4:190394307-190396341:+|nuORF	ENST00000378770.1_1_4:190394307-190396341:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.3040771484375	2	529.279846	1056.54514	-1.0835	-0.00057346	1.3067	0.0006916	0.22321	0.00011814	529.2805174641819	51.638	0.40182	48.464	48.274	48.676	-3.1734					13	7	2	0	0	0	0.026606	1	3034	3034		44.377	0	1	49630			44215	11112	36563	36586	47708	47708					0.019128313724422696
PSKLPPMIG	9	Unmodified	_PSKLPPMIG_					0	0	0			REV__ENSG00000196588|ENST00000355630|MRTFA;REV__nc|ENSG00000186260|Q9ULH7-4|MRTFB	REV__ENSG00000196588|ENST00000355630|MRTFA	MULTI-SECPEP	OvCa9_classI_Rep3	3	469.2769775390625	2	470.270238	938.525924	-0.48883	-0.00022988	1.1082	0.00052115	0.61937	0.00029127	470.27076522112424	77.467	1.1167	75.114	74.734	75.85	-2.3527					50	21	3	0	0	0	0.027462	1	4067	4067		16.473	6.2079	1	437470	+		44216	22847;22569	36564	36587	47709	47709					0.054202035478283506
PSKQKYVCL	9	Unmodified	_PSKQKYVCL_					0	0	0		ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	ENSG00000116212|ENST00000371370|LRRC42	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.2381591796875	2	533.291702	1064.56885	-0.62482	-0.00033321	-2.3285	-0.0012418	-2.9533	-0.001575	533.2899386253373	53.608	0.13166	53.608	53.519	53.651	0					4	2	2	0	0	0	0.027462	1	4276	4276		21.96	0.25755	1	44189			44217	3164	36565	36588	47710	47710					0.03914973605265004
PSKRGHGE	8	Unmodified	_PSKRGHGE_					0	0	0		ENST00000532957.5_1_7:150647071-150647161:-|nuORF	ENST00000532957.5_1_7:150647071-150647161:-|nuORF	ENST00000532957.5_1_7:150647071-150647161:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	434.2247314453125	2	434.225208	866.435863	2.3422	0.001017	-3.2955	-0.001431	-0.95325	-0.00041393	434.22360779184106	134.67	1.4472	134.67	134.43	135.88	0					70	31	3	0	0	0	0.60331	2	15716	15686;15716		63.306	5.495	1	1064400			44218	13331	36566	36589	47711;47712	47712					-0.0026970973636935014
PSKVAKRN	8	Unmodified	_PSKVAKRN_					0	0	0			REV__nc|ENSG00000154429|Q6IQ19-2|CCSAP	REV__nc|ENSG00000154429|Q6IQ19-2|CCSAP	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.2742004394531	2	450.274701	898.534849	-1.3926	-0.00062703	1.3713	0.00061744	-0.0213	-9.5907E-06	450.2752805302911	148.27	1.3965	146.84	146.48	147.87	-1.435					87	28	5	0	0	0	0.7594	1	14650	14650		21.96	2.5999	1	541000	+		44219	20382	36567	36590	47713	47713					0.08152313228515595
PSKYYEKV	8	Unmodified	_PSKYYEKV_					0	0	0		tr|A0A7D6VSH3|A0A7D6VSH3_9CLOTDUF2812domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12760PE=4SV=1	tr|A0A7D6VSH3|A0A7D6VSH3_9CLOTDUF2812domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12760PE=4SV=1	tr|A0A7D6VSH3|A0A7D6VSH3_9CLOTDUF2812domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12760PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.2724914550781	2	507.26875	1012.52295	1.4749	0.00074817	-2.6637	-0.0013512	-1.1888	-0.00060304	507.26720395935047	89.601	1.8322	88.299	87.79	89.622	-1.302					47	36	2	0	0	0	0.028476	1	7849	7849		47.657	0	1	118500			44220	35025	36568	36591	47714	47714					0.017186516946594566
PSLAAPDLRA	10	Unmodified	_PSLAAPDLRA_					0	0	0			REV__ENSG00000091622|ENST00000262483|PITPNM3	REV__ENSG00000091622|ENST00000262483|PITPNM3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.2748107910156	2	505.785099	1009.55564	-1.3257	-0.0006705	0.77722	0.0003931	-0.54845	-0.0002774	505.785521821248	54.728	0.56326	51.48	51.081	51.644	-3.2474					18	10	2	0	0	0	0.026734	1	3367	3367		39.253	16.21	1	75465	+		44221	17253	36569	36592	47715	47715					0.05124858817509903
PSLAAPDLRA	10	Unmodified	_PSLAAPDLRA_					0	0	0			REV__ENSG00000091622|ENST00000262483|PITPNM3	REV__ENSG00000091622|ENST00000262483|PITPNM3	MULTI-MATCH	OvCa99_classI_Rep5	1		2	505.785099	1009.55564	-0.2645	-0.00013378	0.29312	0.00014826	0.028628	1.448E-05	505.7857801840744	51.103	0.52424	51.103	50.64	51.164	0	-0.1886	-0.00044661	NaN	31.53	19	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124900	+		44222	17253	36569	36592							0.05124858817509903
PSLALSWRF	9	Unmodified	_PSLALSWRF_					0	0	0			REV__ENST00000477173.3_1_11:35006185-35041800:+|nuORF	REV__ENST00000477173.3_1_11:35006185-35041800:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.8624267578125	2	538.798009	1075.58147	2.7291	0.0014704	2.4438	0.0013167	5.1729	0.0027871	538.7996556732354	133.5	0.38864	131.98	131.9	132.29	-1.5257					22	7	4	0	0	0	0.027462	1	12881	12881		35.618	17.294	1	48711	+		44223	15612	36570	36593	47716	47716					0.04669753059783943
PSLDLFIKE	9	Unmodified	_PSLDLFIKE_					0	0	0			REV__ENST00000574408.5_1_17:9559773-9578252:+|nuORF	REV__ENST00000574408.5_1_17:9559773-9578252:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	531.8075561523438	2	531.297507	1060.58046	-0.26363	-0.00014007	-3.7396	-0.0019868	-4.0032	-0.0021269	531.2953478646405	78.27	1.0512	75.917	75.546	76.597	-2.3527					28	18	2	0	0	0	0.027455	1	4224	4224		34.173	12.47	1	350750	+		44224	27765	36571	36594	47717	47717					0.05259493900234702
PSLGQVAKFV	10	Unmodified	_PSLGQVAKFV_					0	0	0			REV__ENSG00000100565|ENST00000689127|LRRC74A	REV__ENSG00000100565|ENST00000689127|LRRC74A	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3028564453125	2	523.305667	1044.59678	-2.1227	-0.0011108	-1.8084	-0.00094634	-3.9311	-0.0020572	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.69073	1	11567	11567		31.53	3.4483	1	183010	+		44225	17431	36572	36595	47718	47718					0.0762661985700106
PSLKELDPN	9	Unmodified	_PSLKELDPN_					0	0	0		ENSG00000121440|ENST00000263666|PDZRN3;PDZRN3|p.S823G|1|0.33|ENSG00000121440|chr3:73384099-73384099|T/C|missense_variant	ENSG00000121440|ENST00000263666|PDZRN3	ENSG00000121440|ENST00000263666|PDZRN3	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.3163146972656	2	506.769114	1011.52368	0.66739	0.00033821	0.20759	0.0001052	0.87498	0.00044341	506.76911449163356	159.84	0.33907	159.84	159.62	159.96	0					11	6	2	0	0	0	0.027461	1	18727	18727		32.812	9.7699	1	12636			44226	3484	36573	36596	47719	47719					0.018374463437112354
PSLLLRSN	8	Unmodified	_PSLLLRSN_					0	0	0			REV__ENST00000515773.5_1_6:43152048-43164205:+|nuORF	REV__ENST00000515773.5_1_6:43152048-43164205:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	450.2825927734375	2	450.269084	898.523616	-0.81891	-0.00036873	-0.15697	-7.0677E-05	-0.97587	-0.00043941	450.268869382025	82.84	0.59868	80.543	80.283	80.882	-2.2963					15	11	2	0	0	0	0.028476	1	4712	4712		12.959	0	1	11834	+		44227	27007	36574	36597	47720	47720					0.07029491134380805
PSLMSLTTLL	10	Unmodified	_PSLMSLTTLL_					0	0	0			REV__tr|A0A553SFG9|A0A553SFG9_NIACIABCtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08855PE=3SV=1	REV__tr|A0A553SFG9|A0A553SFG9_NIACIABCtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08855PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.2792358398438	2	538.307018	1074.59948	1.2694	0.00068333	2.5658	0.0013812	3.8352	0.0020645	538.3088202692287	138.76	0.28534	138.76	138.59	138.88	0					8	5	2	0	0	0	0.027147	1	16197	16197		21.96	9.753	1	28188	+		44228	29577	36575	36598	47721	47721					0.06516707199625671
PSLMSLTTLL	10	Unmodified	_PSLMSLTTLL_					0	0	0			REV__tr|A0A553SFG9|A0A553SFG9_NIACIABCtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08855PE=3SV=1	REV__tr|A0A553SFG9|A0A553SFG9_NIACIABCtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08855PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	538.307018	1074.59948	-1.6333	-0.00087922	-1.3389	-0.00072073	-2.9722	-0.0015999	538.306240226399	138.94	1.5723	138.71	137.93	139.5	-0.22696	0.053563	0.00046966	NaN	42.396	48	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23023	+		44229	29577	36575	36598							0.06516707199625671
PSLMSLTTLL	10	Unmodified	_PSLMSLTTLL_					0	0	0			REV__tr|A0A553SFG9|A0A553SFG9_NIACIABCtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08855PE=3SV=1	REV__tr|A0A553SFG9|A0A553SFG9_NIACIABCtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08855PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	538.307018	1074.59948	-0.90561	-0.0004875	-1.6359	-0.0008806	-2.5415	-0.0013681	538.3062418424298	139.59	1.0324	138.53	137.98	139.01	-1.0595	-0.12689	0.00014991	NaN	42.396	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29771	+		44230	29577	36575	36598							0.06516707199625671
PSLMSLTTLL	10	Unmodified	_PSLMSLTTLL_					0	0	0			REV__tr|A0A553SFG9|A0A553SFG9_NIACIABCtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08855PE=3SV=1	REV__tr|A0A553SFG9|A0A553SFG9_NIACIABCtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08855PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	538.307018	1074.59948	0.25182	0.00013556	-3.1343	-0.0016872	-2.8825	-0.0015517	538.8064145796501	140.12	1.6334	138.62	138.15	139.78	-1.4952	-0.031711	-0.0014633	NaN	42.396	52	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16510	+		44231	29577	36575	36598							0.06516707199625671
PSLRQFPL	8	Unmodified	_PSLRQFPL_					0	0	0			REV__IGSF3|p.R1054P|1|0.55|ENSG00000143061|chr1:116579565-116579565|C/G|missense_variant	REV__IGSF3|p.R1054P|1|0.55|ENSG00000143061|chr1:116579565-116579565|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	479.27947998046875	2	479.279452	956.544351	-0.31076	-0.00014894	0.33219	0.00015921	0.021432	1.0272E-05	479.2797349881233	95.486	3.0134	94.457	93.134	96.147	-1.0281					131	60	4	0	0	0	0.59148	1	8568	8568		65.803	2.4969	1	2203400	+		44232	28299	36576	36599	47722	47722					0.0643408151404401
PSLRQFPL	8	Unmodified	_PSLRQFPL_					0	0	0			REV__IGSF3|p.R1054P|1|0.55|ENSG00000143061|chr1:116579565-116579565|C/G|missense_variant	REV__IGSF3|p.R1054P|1|0.55|ENSG00000143061|chr1:116579565-116579565|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	479.2802734375	2	479.279452	956.544351	-0.4527	-0.00021697	0.44392	0.00021276	-0.0087808	-4.2085E-06	479.2796688729981	96.325	1.9148	94.496	94.027	95.941	-1.8286					106	37	4	0	0	0	0.59148	1	6347	6347		65.803	5.5092	1	3171600	+		44233	28299	36576	36599	47723	47723					0.0643408151404401
PSLSHNLLVD	10	Unmodified	_PSLSHNLLVD_					0	0	0		nc|ENSG00000123992|Q9ULA0-2|DNPEP;ENSG00000123992|ENST00000273075|DNPEP	nc|ENSG00000123992|Q9ULA0-2|DNPEP	nc|ENSG00000123992|Q9ULA0-2|DNPEP	MULTI-MSMS	OvCa99_classI_Rep5	1	547.7971801757812	2	547.795663	1093.57677	2.6238	0.0014373	-0.5784	-0.00031685	2.0454	0.0011205	547.7952797873915	87.86	2.0105	87.86	87.505	89.516	0					110	48	4	0	0	0	0.33877	2	9328	9299;9328		76.17	19.449	1	21152000			44234	3620	36577	36600	47724;47725	47725					0.03372824126381602
PSLSHNLLVD	10	Unmodified	_PSLSHNLLVD_					0	0	0		nc|ENSG00000123992|Q9ULA0-2|DNPEP;ENSG00000123992|ENST00000273075|DNPEP	nc|ENSG00000123992|Q9ULA0-2|DNPEP	nc|ENSG00000123992|Q9ULA0-2|DNPEP	MULTI-MSMS	OvCa9_classI_Rep3	3	547.7969970703125	2	547.795663	1093.57677	-1.08	-0.0005916	1.2488	0.00068408	0.16882	9.2477E-05	547.7960321928275	90.129	1.7815	88.048	87.696	89.477	-2.0805					91	34	5	0	0	0	0.38315	2	5575	5575;5580		70.816	14.095	1	631640			44235	3620	36577	36600	47726;47727	47726					0.03372824126381602
PSLSHNLLVD	10	Unmodified	_PSLSHNLLVD_					0	0	0		nc|ENSG00000123992|Q9ULA0-2|DNPEP;ENSG00000123992|ENST00000273075|DNPEP	nc|ENSG00000123992|Q9ULA0-2|DNPEP	nc|ENSG00000123992|Q9ULA0-2|DNPEP	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.7973022460938	2	547.795663	1093.57677	-0.29871	-0.00016363	0.24499	0.0001342	-0.053721	-2.9428E-05	547.7955534971053	90.585	2.0361	88.01	87.6	89.636	-2.575					92	37	4	0	0	0	0.43433	1	7814	7814		63.534	1.4264	1	521420			44236	3620	36577	36600	47728	47728					0.03372824126381602
PSLSHNLLVD	10	Unmodified	_PSLSHNLLVD_					0	0	0		nc|ENSG00000123992|Q9ULA0-2|DNPEP;ENSG00000123992|ENST00000273075|DNPEP	nc|ENSG00000123992|Q9ULA0-2|DNPEP	nc|ENSG00000123992|Q9ULA0-2|DNPEP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	547.795663	1093.57677	1.9034	0.0010427	-1.8778	-0.0010287	0.025595	1.4021E-05	547.7943263967636	89.471	1.6814	88.169	87.74	89.422	-1.302	0.14732	-0.0018219	NaN	76.17	94	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297040			44237	3620	36577	36600							0.03372824126381602
PSLTALLH	8	Unmodified	_PSLTALLH_					0	0	0		ENST00000544948.1_1_11:63849184-63849322:+|nuORF	ENST00000544948.1_1_11:63849184-63849322:+|nuORF	ENST00000544948.1_1_11:63849184-63849322:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	427.2503967285156	2	426.252903	850.491253	-0.24192	-0.00010312	0.16737	7.1343E-05	-0.074543	-3.1774E-05	426.2528805563242	91.157	1.3621	89.133	88.727	90.089	-2.0241					50	26	2	0	0	0	0.028476	1	5657	5657		28.254	0	1	273860			44238	13515	36578	36601	47729	47729					0.06002703731383008
PSLTKQELLH	10	Unmodified	_PSLTKQELLH_					0	0	0			REV__C9orf3-HIATL1|1|fusion	REV__C9orf3-HIATL1|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	583.3313598632812	2	583.332413	1164.65027	-0.46914	-0.00027366	-2	-0.0011666	-2.4691	-0.0014403	583.3312834632095	22.835	0.83635	22.835	22.66	23.497	0					42	17	4	0	0	0	0.42962	1	254	254		64.207	7.4862	1	1372800	+		44239	15721	36579	36602	47730	47730					0.07453372568852501
PSLTKVTSI	9	Unmodified	_PSLTKVTSI_					0	0	0			REV__ING5|p.K135Rfs*25|1|0.15|ENSG00000168395|chr2:241711990-241712000|AGAAAGAAAAA/-|frameshift_variant	REV__ING5|p.K135Rfs*25|1|0.15|ENSG00000168395|chr2:241711990-241712000|AGAAAGAAAAA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	473.2838134765625	2	473.2844	944.554247	0.23176	0.00010969	-1.092	-0.00051685	-0.86028	-0.00040716	473.2837734695887	86.706	1.6364	85.275	84.553	86.189	-1.4311					90	31	4	0	0	0	0.025955	1	7534	7534		139.97	7.2126	1	769710	+		44240	21371	36580	36603	47731	47731					0.079752247287729
PSLVVWSPP	9	Unmodified	_PSLVVWSPP_					0	0	0		ENST00000463083.1_2_6:34214582-34214708:-|nuORF	ENST00000463083.1_2_6:34214582-34214708:-|nuORF	ENST00000463083.1_2_6:34214582-34214708:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	491.7999267578125	2	491.273835	980.533118	0.19377	9.5192E-05	-4.2574	-0.0020916	-4.0636	-0.0019964	491.2717096968779	105.32	1.2468	104.89	104.6	105.85	-0.43642					63	24	3	0	0	0	0.027462	1	9885	9885		38.806	0	1	105740			44241	12219	36581	36604	47732	47732					0.04207259419899856
PSMGNPTL	8	Unmodified	_PSMGNPTL_					0	0	0			REV__tr|A0A7D6VMM9|A0A7D6VMM9_9CLOTIronABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14240PE=3SV=1	REV__tr|A0A7D6VMM9|A0A7D6VMM9_9CLOTIronABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14240PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	408.8909912109375	2	408.699646	815.384739	0.93928	0.00038388	2.6257	0.0010731	3.565	0.001457	408.6997344818791	22.011	0.55574	20.673	20.321	20.877	-1.3386					15	10	2	0	0	0	0.028476	1	250	250		31.955	13.63	1	6994.1	+		44242	31140	36582	36605	47733	47733					-0.03033794825444147
PSMKLVTK	8	Unmodified	_PSMKLVTK_					0	0	0			REV__tr|A0A7D6VZA3|A0A7D6VZA3_9CLOTNAD(P)-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18870PE=3SV=1	REV__tr|A0A7D6VZA3|A0A7D6VZA3_9CLOTNAD(P)-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18870PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.2491455078125	2	452.270238	902.525924	0.17933	8.1104E-05	2.7992	0.001266	2.9785	0.0013471	452.27142700433967	52.786	0.14844	49.578	49.502	49.651	-3.208					4	2	2	0	0	0	0.028476	1	3188	3188		17.365	0.89182	1	6167.9	+		44243	31835	36583	36606	47734	47734					0.07076203547831028
PSMSFLRRKVI	11	Oxidation (M)	_PSM(Oxidation (M))SFLRRKVI_		PSM(1)SFLRRKVI		PSM(58)SFLRRKVI	0	0	1		ENSG00000182544|ENST00000329548|MFSD5;nc|ENSG00000182544|Q6N075-2|MFSD5	ENSG00000182544|ENST00000329548|MFSD5	ENSG00000182544|ENST00000329548|MFSD5	MULTI-MSMS	OvCa9_classI_Rep2	2	450.59759521484375	3	450.595585	1348.76493	2.0912	0.00094228	3.2399	0.0014599	5.3311	0.0024022	450.59700338359727	73.597	2.3004	71.197	70.687	72.988	-2.3999					152	43	5	0	0	0	0.4397	1	5992	5992		58.246	13.607	1	946140			44244	8006	36584	36607	47735	47735		245			0.1044935877912394
PSNEEQIKN	9	Unmodified	_PSNEEQIKN_					0	0	0		ENSG00000158516|ENST00000222481|CPA2	ENSG00000158516|ENST00000222481|CPA2	ENSG00000158516|ENST00000222481|CPA2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.3040771484375	2	529.759278	1057.504	-1.7334	-0.00091826	1.4792	0.0007836	-0.25418	-0.00013466	529.7597478169768	51.009	1.1103	47.836	47.412	48.522	-3.1734					52	20	4	0	0	0	0.027426	1	3034	3034		47.657	6.8792	1	121800			44245	5957	36585	36608	47736	47736					-0.022449296670401964
PSNWLGFAL	9	Unmodified	_PSNWLGFAL_					0	0	0			REV__tr|A0A553SUK2|A0A553SUK2_NIACIHPPfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01010PE=4SV=1	REV__tr|A0A553SUK2|A0A553SUK2_NIACIHPPfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01010PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	502.76263427734375	2	502.763635	1003.51272	1.2962	0.00065166	-2.0149	-0.001013	-0.71875	-0.00036136	502.76247959947113	61.457	2.958	58.389	57.803	60.761	-3.0685					131	69	3	0	0	0	0.48324	1	2186	2186		44.117	3.3386	1	112640	+		44246	31089	36586	36609	47737	47737					0.01110088760083272
PSPAKRLRL	9	Unmodified	_PSPAKRLRL_					0	0	0		Tigger1_dup11946|chr22:15828868-15829349:-|2.0143775268303656|0.126984307270513|3.99|417.0|8|2|sense;Tigger1_dup9834|chr14:19106484-19106883:-|1.64118294126502|0.2064126540684672|2.99|422.0|8|2|sense	Tigger1_dup11946|chr22:15828868-15829349:-|2.0143775268303656|0.126984307270513|3.99|417.0|8|2|sense	Tigger1_dup11946|chr22:15828868-15829349:-|2.0143775268303656|0.126984307270513|3.99|417.0|8|2|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.3334350585938	2	519.33255	1036.65055	-1.0118	-0.00052548	-0.25849	-0.00013424	-1.2703	-0.00065972	519.3324941358322	73.773	2.304	70.377	69.64	71.944	-3.3961					165	47	5	0	0	0	0.67509	1	5733	5733		23.042	3.0457	1	1441500			44247	32955	36587	36610	47738	47738					0.13368837079360674
PSPATPRFSVP	11	Unmodified	_PSPATPRFSVP_					0	0	0		ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MULTI-MSMS	OvCa9_classI_Rep3	3	578.31103515625	2	578.31148	1154.60841	-5.0394	-0.0029143	2.8881	0.0016702	-2.1513	-0.0012441	578.3129890075253	149.06	1.3548	148.11	147.7	149.05	-0.95119					72	26	4	0	0	0	0.69808	1	12608	12608		30.318	0	1	213080			44248	3568	36588	36611	47739	47739					0.037288168803115695
PSPINAFSNF	10	Unmodified	_PSPINAFSNF_					0	0	0		nc|ENSG00000090905|Q8NDV7-6|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A;nc|ENSG00000090905|Q8NDV7-2|TNRC6A;nc|ENSG00000090905|Q8NDV7-3|TNRC6A;ENST00000462400.1_1_16:24816349-24826700:+|nuORF	nc|ENSG00000090905|Q8NDV7-6|TNRC6A	nc|ENSG00000090905|Q8NDV7-6|TNRC6A	MULTI-SECPEP	OvCa9_classI_Rep2	2	546.2799682617188	2	547.269281	1092.52401	-1.3285	-0.00072703	-2.1595	-0.0011818	-3.488	-0.0019088	547.2680106442183	63.453	1.2596	60.709	60.213	61.473	-2.7444					50	23	3	0	0	0	0.026968	1	4878	4878		29.17	8.2231	1	157440			44249	1851	36589	36612	47740	47740					-0.018551339364194064
PSPPAFLPF	9	Unmodified	_PSPPAFLPF_					0	0	0		ENSG00000069399|ENST00000164227|BCL3	ENSG00000069399|ENST00000164227|BCL3	ENSG00000069399|ENST00000164227|BCL3	MSMS	OvCa9_classI_Rep2	2	486.7654113769531	2	486.763104	971.511654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.901	1	30.191	29.691	30.691	-2.7097								0	0	0	0.18998	1	1129	1129		28.254	0.37203	1				44250	1408	36590	36613	47741	47741					0.024758743911775127
PSPRGVPSK	9	Unmodified	_PSPRGVPSK_					0	0	0			REV__tr|A0A7D6VS28|A0A7D6VS28_9CLOTLargeribosomalsubunitproteinuL2OS=ClostridiumintestinaleOX=36845GN=rplBPE=3SV=1	REV__tr|A0A7D6VS28|A0A7D6VS28_9CLOTLargeribosomalsubunitproteinuL2OS=ClostridiumintestinaleOX=36845GN=rplBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	462.76837158203125	2	462.766709	923.518865	-1.6143	-0.00074706	2.0664	0.00095627	0.45208	0.00020921	462.76749070870113	38.258	1.04	35.548	35.37	36.41	-2.7097					45	20	4	0	0	0	0.60342	1	1818	1818		31.53	3.6476	1	313510	+		44251	31463	36591	36614	47742	47742					0.0540460699162395
PSPRRWPQ	8	Unmodified	_PSPRRWPQ_					0	0	0			REV__ENST00000453289.1_1_2:27580061-27580693:+|nuORF	REV__ENST00000453289.1_1_2:27580061-27580693:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.2760620117188	2	512.277775	1022.541	0.69813	0.00035764	-1.1753	-0.00060209	-0.47719	-0.00024446	512.2779739927399	92.128	0.94558	90.893	90.484	91.43	-1.2355					25	17	2	0	0	0	0.028476	1	8221	8221		12.207	0	1	33331	+		44252	25992	36592	36615	47743	47743					0.030628314600335216
PSPSSCFEAFK	11	Unmodified	_PSPSSCFEAFK_					0	0	0			REV__INTS3|p.P494A|1|0.03|ENSG00000143624|chr1:153761640-153761640|C/G|missense_variant	REV__INTS3|p.P494A|1|0.03|ENSG00000143624|chr1:153761640-153761640|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	600.2718505859375	2	600.273706	1198.53286	-5.4229	-0.0032552	2.5035	0.0015028	-2.9194	-0.0017524	600.2750319043287	159.18	1.1999	158.96	158.63	159.83	-0.22697					79	23	5	0	0	0	0.72479	1	16259	16259		18.262	0.89712	1	203880	+		44253	28309	36593	36616	47744	47744					-0.058465283622808784
PSPSWPAR	8	Unmodified	_PSPSWPAR_					0	0	0			REV__chr14:105845677-105865407|87|15.47|0.0|20.56|-|0|IGHD,IGHJ1|1	REV__chr14:105845677-105865407|87|15.47|0.0|20.56|-|0|IGHD,IGHJ1|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.22528076171875	2	449.232502	896.450451	0.39088	0.0001756	-3.4043	-0.0015293	-3.0134	-0.0013537	449.23102160605197	98.656	0.98064	96.277	96.022	97.002	-2.3786					30	18	2	0	0	0	0.028476	1	8775	8775		30.504	16.728	1	63817	+		44254	15904	36594	36617	47745	47745					-0.0019163758825015975
PSPSWPAR	8	Unmodified	_PSPSWPAR_					0	0	0			REV__chr14:105845677-105865407|87|15.47|0.0|20.56|-|0|IGHD,IGHJ1|1	REV__chr14:105845677-105865407|87|15.47|0.0|20.56|-|0|IGHD,IGHJ1|1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	449.232502	896.450451	-0.29471	-0.0001324	-3.4194	-0.0015361	-3.7141	-0.0016685	449.2306866011945	97.752	1.0028	95.993	95.672	96.674	-1.7595	-0.14228	-3.1944E-06	NaN	23.042	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73550	+		44255	15904	36594	36617							-0.0019163758825015975
PSQDGVHEV	9	Unmodified	_PSQDGVHEV_					0	0	0			REV__ENSG00000141252|ENST00000437048|VPS53	REV__ENSG00000141252|ENST00000437048|VPS53	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.2705078125	2	484.227613	966.440674	-0.59894	-0.00029002	0.2843	0.00013767	-0.31464	-0.00015236	484.2275043603454	52.634	1.2584	49.426	49.196	50.454	-3.208					35	24	3	0	0	0	0.027462	1	3185	3185		34.173	2.2177	1	75780	+		44256	19721	36595	36618	47746	47746					-0.04388870384286747
PSQGDWDQL	9	Unmodified	_PSQGDWDQL_					0	0	0			REV__ENSG00000188641|ENST00000370192|DPYD	REV__ENSG00000188641|ENST00000370192|DPYD	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.8145751953125	2	523.232896	1044.45124	-0.18433	-9.6445E-05	2.9944	0.0015668	2.81	0.0014703	523.2343022834993	60.85	0.75027	57.42	57.144	57.894	-3.43					26	14	2	0	0	0	0.027459	1	4167	4167		62.107	8.756	1	45011	+		44257	22724	36596	36619	47747	47747					-0.06920887729847891
PSQVQPVIL	9	Unmodified	_PSQVQPVIL_					0	0	0		ENST00000303596.2_1_16:67877760-67877943:+|nuORF	ENST00000303596.2_1_16:67877760-67877943:+|nuORF	ENST00000303596.2_1_16:67877760-67877943:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.7727966308594	2	490.792392	979.570232	2.054	0.0010081	-0.032411	-1.5907E-05	2.0216	0.0009922	490.79223258762624	98.706	1.0704	98.706	98.165	99.236	0					62	25	4	0	0	0	0.027448	1	10855	10855		35.618	3.6634	1	1439900			44258	10217	36597	36620	47748	47748					0.07962930965663872
PSQVQPVIL	9	Unmodified	_PSQVQPVIL_					0	0	0		ENST00000303596.2_1_16:67877760-67877943:+|nuORF	ENST00000303596.2_1_16:67877760-67877943:+|nuORF	ENST00000303596.2_1_16:67877760-67877943:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	490.792392	979.570232	-0.19985	-9.8085E-05	0.023795	1.1678E-05	-0.17606	-8.6407E-05	490.7922506300549	99.323	1.1911	98.492	98.219	99.41	-0.83051	-0.04789	-7.7144E-05	NaN	35.618	39	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255910			44259	10217	36597	36620							0.07962930965663872
PSQVQPVIL	9	Unmodified	_PSQVQPVIL_					0	0	0		ENST00000303596.2_1_16:67877760-67877943:+|nuORF	ENST00000303596.2_1_16:67877760-67877943:+|nuORF	ENST00000303596.2_1_16:67877760-67877943:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	490.792392	979.570232	-0.91922	-0.00045115	-0.66429	-0.00032603	-1.5835	-0.00077718	490.7918609763742	100.15	1.6948	98.542	97.909	99.603	-1.6053	0.0023593	-0.00075256	NaN	35.618	57	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	353310			44260	10217	36597	36620							0.07962930965663872
PSRAAQPADL	10	Unmodified	_PSRAAQPADL_					0	0	0		COL5A1|p.Q491Hfs*125|1|0.14|ENSG00000130635|chr9:134738786-134738787|-/C|frameshift_variant;COL5A1|p.E1571Rfs*53|1|0.06|ENSG00000130635|chr9:134823462-134823463|-/C|frameshift_variant;nc|ENSG00000130635|P20908-2|COL5A1;ENSG00000130635|ENST00000371817|COL5A1	COL5A1|p.Q491Hfs*125|1|0.14|ENSG00000130635|chr9:134738786-134738787|-/C|frameshift_variant	COL5A1|p.Q491Hfs*125|1|0.14|ENSG00000130635|chr9:134738786-134738787|-/C|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.3203735351562	2	513.272355	1024.53016	-1.1386	-0.00058442	1.2969	0.00066567	0.15829	8.1247E-05	513.2728195605563	55.229	0.9185	51.934	51.597	52.516	-3.2944					36	17	3	0	0	0	0.026968	1	3436	3436		29.17	0	1	59154			44261	596	36598	36621	47749	47749					0.018873842950824837
PSRALLLLL	9	Unmodified	_PSRALLLLL_					0	0	0		ENSG00000120937|ENST00000376468|NPPB	ENSG00000120937|ENST00000376468|NPPB	ENSG00000120937|ENST00000376468|NPPB	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.33502197265625	2	498.334227	994.653902	-1.8174	-0.00090567	1.0953	0.00054583	-0.72208	-0.00035984	498.334772441205	125.12	4.2738	123.72	123.39	127.66	-1.3908					210	84	5	0	0	0	0.24951	2	11869	11869;11952		68.787	6.9847	1	4129000			44262	3461	36599	36622	47750;47751	47750					0.15636087133384535
PSRDPCAL	8	Unmodified	_PSRDPCAL_					0	0	0		ENST00000228027.11_3_11:75479873-75479993:+|nuORF	ENST00000228027.11_3_11:75479873-75479993:+|nuORF	ENST00000228027.11_3_11:75479873-75479993:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	429.7102966308594	2	429.710545	857.406537	-0.10689	-4.5932E-05	-3.7607	-0.001616	-3.8676	-0.001662	429.7087974314282	53.279	1.2716	50.071	49.746	51.018	-3.208					57	24	4	0	0	0	0.65062	1	3249	3249		53.351	1.0523	1	357310			44263	9708	36600	36623	47752	47752					-0.02786990076890561
PSRERLPW	8	Unmodified	_PSRERLPW_					0	0	0		ENSG00000174292|ENST00000688331|TNK1;nc|ENSG00000174292|Q13470|TNK1	ENSG00000174292|ENST00000688331|TNK1	ENSG00000174292|ENST00000688331|TNK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.7876586914062	2	520.785433	1039.55631	-0.97534	-0.00050794	-1.0458	-0.00054462	-2.0211	-0.0010526	520.7843828897306	55.307	0.40637	55.307	55.193	55.599	0					16	9	2	0	0	0	0.028476	1	4502	4502		8.2313	0	1	419230			44264	7454	36601	36624	47753	47753					0.0381169825723191
PSRFNPKKT	9	Unmodified	_PSRFNPKKT_					0	0	0		L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|159|3|sense	L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|159|3|sense	L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|159|3|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	537.8062744140625	2	537.806365	1073.59818	-0.94155	-0.00050637	0.17111	9.2024E-05	-0.77044	-0.00041435	537.8064194762118	69.853	1.4073	67.282	66.915	68.322	-2.5707					86	27	5	0	0	0	0.46356	1	5579	5579		45.972	1.8554	1	1089100			44265	14559	36602	36625	47754	47754					0.0643225394574074
PSRFPINEP	9	Unmodified	_PSRFPINEP_					0	0	0			REV__nc|ENSG00000263001|P78347-2|GTF2I;REV__ENST00000544802.5_1_7:72593260-72619478:+|nuORF	REV__ENST00000544802.5_1_7:72593260-72619478:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.3040771484375	2	528.777274	1055.53999	-1.7822	-0.00094237	-2.1469	-0.0011352	-3.929	-0.0020776	528.7757961203963	50.779	1.2125	47.606	47.412	48.624	-3.1734					40	23	4	0	0	0	0.027462	1	3034	3034		26.693	0	1	72481	+		44266	23576;27405	36603	36626	47755	47755					0.01444572300465552
PSRHNVIEL	9	Unmodified	_PSRHNVIEL_					0	0	0			REV__DROSHA|p.E1354Vfs*16|1|0.29|ENSG00000113360|chr5:31401496-31401497|-/TGTA|frameshift_variant	REV__DROSHA|p.E1354Vfs*16|1|0.29|ENSG00000113360|chr5:31401496-31401497|-/TGTA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	532.7991333007812	2	532.795998	1063.57744	1.1033	0.00058781	4.1061	0.0021877	5.2093	0.0027755	532.7981171208816	142.91	0.53166	142.91	142.69	143.22	0					20	10	3	0	0	0	0.44568	1	16703	16703		47.657	1.7054	1	102480	+		44267	16338	36604	36627	47756	47756					0.048196635660815446
PSRIFSSEEI	10	Unmodified	_PSRIFSSEEI_					0	0	0		tr|A0A7D6W0R7|A0A7D6W0R7_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_00580PE=4SV=1	tr|A0A7D6W0R7|A0A7D6W0R7_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_00580PE=4SV=1	tr|A0A7D6W0R7|A0A7D6W0R7_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_00580PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	582.8019409179688	2	582.798403	1163.58225	1.1315	0.00065944	3.8859	0.0022647	5.0174	0.0029241	582.8006818033648	147.53	6.6763	147.53	147.01	153.69	0					349	139	4	0	0	0	0.60504	1	17408	17408		41.427	1.3684	1	20317000			44268	35386	36605	36628	47757	47757					0.007005029181982536
PSRLGCPVH	9	Unmodified	_PSRLGCPVH_					0	0	0			REV__ENST00000360222.8_1_19:14857708-14876689:-|nuORF	REV__ENST00000360222.8_1_19:14857708-14876689:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.2756042480469	2	483.252911	964.49127	-0.061827	-2.9878E-05	0.15064	7.2797E-05	0.088812	4.2919E-05	483.2517703558435	53.002	0.34591	53.002	52.741	53.087	0					17	7	3	0	0	0	0.027462	1	4172	4172		13.775	0	1	376870	+		44269	24824	36606	36629	47758	47758					0.007603804597238195
PSRLIASL	8	Unmodified	_PSRLIASL_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	OvCa9_classI_Rep2	2	429.25048828125	2	428.766178	855.517802	1.4281	0.00061233	-1.1223	-0.00048121	0.30579	0.00013111	428.76562134669257	89.922	1.2885	88.62	88.334	89.622	-1.302					32	25	2	0	0	0	0.028476	1	8037	8037		10.866	0	1	19967	+		44270	17152	36607	36630	47759	47759					0.084263926227095
PSRLLAILL	9	Unmodified	_PSRLLAILL_					0	0	0		ENST00000510359.1_1_5:106716958-106724204:-|nuORF;ENSG00000184349|ENST00000333274|EFNA5	ENST00000510359.1_1_5:106716958-106724204:-|nuORF	ENST00000510359.1_1_5:106716958-106724204:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.333740234375	2	498.334227	994.653902	0.2425	0.00012085	-0.5271	-0.00026267	-0.2846	-0.00014182	498.33387359588454	132.52	1.8753	132.29	131.93	133.81	-0.22696					110	37	5	0	0	0	0.46356	1	13090	13090		45.972	0	1	948910			44271	8148	36608	36631	47760	47760					0.15636087133384535
PSRLLAILL	9	Unmodified	_PSRLLAILL_					0	0	0		ENST00000510359.1_1_5:106716958-106724204:-|nuORF;ENSG00000184349|ENST00000333274|EFNA5	ENST00000510359.1_1_5:106716958-106724204:-|nuORF	ENST00000510359.1_1_5:106716958-106724204:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.33380126953125	2	498.334227	994.653902	-0.31291	-0.00015594	0.085793	4.2754E-05	-0.22712	-0.00011318	498.334174042398	135.29	1.7167	135.06	134.69	136.4	-0.22696					83	34	4	0	0	0	0.53957	1	13488	13488		38.806	0	1	281670			44272	8148	36608	36631	47761	47761					0.15636087133384535
PSRLLRQAFTP	11	Unmodified	_PSRLLRQAFTP_					0	0	0			REV__ENST00000409698.1_1_2:128608170-128608230:-|nuORF	REV__ENST00000409698.1_1_2:128608170-128608230:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	643.3717041015625	2	643.372404	1284.73025	0.45059	0.0002899	-0.69786	-0.00044899	-0.24727	-0.00015909	643.3719443736512	90.872	1.4579	89.636	89.341	90.799	-1.2355					85	27	4	0	0	0	0.41331	1	8045	8045		51.193	3.2332	1	735680	+		44273	25475	36609	36632	47762	47762					0.09927858962691971
PSRPLTSHGS	10	Unmodified	_PSRPLTSHGS_					0	0	0			REV__TNS2|p.P1240Lfs*67|1|0.09|ENSG00000111077|chr12:53062426-53062427|-/T|frameshift_variant	REV__TNS2|p.P1240Lfs*67|1|0.09|ENSG00000111077|chr12:53062426-53062427|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	519.7708740234375	2	519.76998	1037.52541	-2.1715	-0.0011287	1.758	0.00091377	-0.4135	-0.00021493	519.7707170403313	35.934	0.74412	33.224	33.001	33.745	-2.7097					30	14	3	0	0	0	0.65849	1	1500	1500		35.152	4.8343	1	60969	+		44274	18016	36610	36633	47763	47763					0.008145001523189421
PSRPRPRH	8	Unmodified	_PSRPRPRH_					0	0	0			REV__ENST00000265678.8_1_6:166825790-166826246:-|nuORF	REV__ENST00000265678.8_1_6:166825790-166826246:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.791259765625	2	501.788841	1001.56313	0.18165	9.1152E-05	2.1776	0.0010927	2.3593	0.0011839	501.7897348150944	32.473	0.94865	29.777	29.403	30.352	-2.6954					46	23	3	0	0	0	0.75661	1	809	809		19.36	0	1	37577	+		44275	24033	36611	36634	47764	47764					0.06241055928467176
PSRRLTWV	8	Unmodified	_PSRRLTWV_					0	0	0			REV__ENST00000320248.3_1_8:1951326-1951533:+|nuORF	REV__ENST00000320248.3_1_8:1951326-1951533:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.7945861816406	2	507.795801	1013.57705	-0.96586	-0.00049046	-2.7323	-0.0013875	-3.6982	-0.0018779	507.7943707084287	53.067	0.85144	49.859	49.502	50.354	-3.208					24	16	2	0	0	0	0.028476	1	3229	3229		25.45	11.675	1	70097	+		44276	24439	36612	36635	47765	47765					0.07080288636882415
PSRRLVAQ	8	Unmodified	_PSRRLVAQ_					0	0	0			REV__tr|A0A553SG73|A0A553SG73_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_10275PE=4SV=1	REV__tr|A0A553SG73|A0A553SG73_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_10275PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.77996826171875	2	463.780151	925.545748	-1.1938	-0.00055368	1.1295	0.00052383	-0.064358	-2.9848E-05	463.7805701405269	40.979	1.4572	38.025	37.685	39.142	-2.9541					74	27	4	0	0	0	0.74229	1	1816	1816		30.504	0	1	433320	+		44277	29668	36613	36636	47766	47766					0.07999715602795732
PSRRLVAQ	8	Unmodified	_PSRRLVAQ_					0	0	0			REV__tr|A0A553SG73|A0A553SG73_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_10275PE=4SV=1	REV__tr|A0A553SG73|A0A553SG73_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_10275PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	463.780151	925.545748	0.30215	0.00014013	-0.24745	-0.00011476	0.054705	2.5371E-05	463.7798701379682	40.921	1.083	38.212	37.897	38.98	-2.7097	0.093144	-0.00071053	NaN	30.504	43	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94319	+		44278	29668	36613	36636							0.07999715602795732
PSRRRGSLP	9	Unmodified	_PSRRRGSLP_					0	0	0			REV__ENSG00000272031|ENST00000606888|ANKRD34A	REV__ENSG00000272031|ENST00000606888|ANKRD34A	MULTI-MSMS	OvCa9_classI_Rep3	3	513.3040771484375	2	513.301781	1024.58901	0.34771	0.00017848	1.6413	0.00084247	1.989	0.0010209	513.302615826109	103.47	2.7157	102.04	101.29	104.01	-1.4347					126	51	4	0	0	0	0.19758	1	7157	7157		76.774	0	1	1368900	+		44279	23612	36614	36637	47767	47767					0.07769905380087039
PSRSGDIRM	9	Unmodified	_PSRSGDIRM_					0	0	0		ENSG00000283439|ENST00000636696|SPEM3	ENSG00000283439|ENST00000636696|SPEM3	ENSG00000283439|ENST00000636696|SPEM3	MULTI-MSMS	OvCa9_classI_Rep3	3	509.75579833984375	2	509.758558	1017.50256	-2.1054	-0.0010733	-3.1017	-0.0015811	-5.2072	-0.0026544	509.7567770654691	139.82	0.7395	138.79	138.54	139.28	-1.0339					19	14	2	0	0	0	0.66262	1	11505	11505		24.519	2.5593	1	26252			44280	9615	36615	36638	47768	47768					-0.005488422367875501
PSRSPGRTF	9	Unmodified	_PSRSPGRTF_					0	0	0		chr12:124344874-124346564|159|21.47|0.95|4.5|-|1|None,NCOR2|1	chr12:124344874-124346564|159|21.47|0.95|4.5|-|1|None,NCOR2|1	chr12:124344874-124346564|159|21.47|0.95|4.5|-|1|None,NCOR2|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.79339599609375	2	502.76724	1003.51993	-1.6525	-0.00083082	-3.9523	-0.0019871	-5.6048	-0.0028179	502.7653317348018	48.9	1.0923	45.792	45.192	46.285	-3.1077					27	20	2	0	0	0	0.027433	1	2677	2677		37.812	3.639	1	22746			44281	309	36616	36639	47769	47769					0.0183082136052235
PSRSPGRTF	9	Unmodified	_PSRSPGRTF_					0	0	0		chr12:124344874-124346564|159|21.47|0.95|4.5|-|1|None,NCOR2|1	chr12:124344874-124346564|159|21.47|0.95|4.5|-|1|None,NCOR2|1	chr12:124344874-124346564|159|21.47|0.95|4.5|-|1|None,NCOR2|1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	502.76724	1003.51993	0.41236	0.00020732	-1.7073	-0.00085839	-1.295	-0.00065107	502.76681763254584	45.807	0.17984	45.807	45.71	45.89	0	0.040368	0.0018934	NaN	37.812	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40136			44282	309	36616	36639							0.0183082136052235
PSRTTPLPD	9	Unmodified	_PSRTTPLPD_					0	0	0			REV__ENST00000361981.7_1_X:153127328-153128099:-|nuORF	REV__ENST00000361981.7_1_X:153127328-153128099:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	491.78179931640625	2	492.261456	982.50836	0.98099	0.0004829	-1.9047	-0.00093763	-0.92375	-0.00045473	492.26060985732624	70.884	0.92351	68.314	67.765	68.688	-2.5707					23	17	2	0	0	0	0.027441	1	5675	5675		58.782	24.609	1	52731	+		44283	24872	36617	36640	47770	47770					0.016405795465175288
PSSCPGNLEPL	11	Unmodified	_PSSCPGNLEPL_					0	0	0		ENST00000335793.3_1_17:71280888-71281083:-|nuORF	ENST00000335793.3_1_17:71280888-71281083:-|nuORF	ENST00000335793.3_1_17:71280888-71281083:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	557.268798828125	2	557.265881	1112.51721	2.944	0.0016406	3.015	0.0016802	5.959	0.0033208	557.2677368130519	94.228	0.55305	94.228	93.964	94.517	0					33	12	3	0	0	0	0.58572	1	10271	10271		45.972	0.020292	1	3497800			44284	10503	36618	36641	47771	47771					-0.03454814879319201
PSSFAASF	8	Unmodified	_PSSFAASF_					0	0	0		ENST00000274853.7_1_6:30654729-30655098:-|nuORF	ENST00000274853.7_1_6:30654729-30655098:-|nuORF	ENST00000274853.7_1_6:30654729-30655098:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	407.1937561035156	2	407.192511	812.370469	2.5593	0.0010421	0.16744	6.8182E-05	2.7268	0.0011103	407.19245363190157	90.866	1.4905	90.866	90.346	91.837	0					82	36	3	0	0	0	0.52992	1	9760	9760		74.517	0	1	2546100			44285	10025	36619	36642	47772	47772					-0.043221239820923074
PSSFRLPTL	9	Unmodified	_PSSFRLPTL_					0	0	0		Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|39|2|sense;Harlequin-int_dup161|chr4:91353598-91357139:-|1.3911466287095282|0.2716421829311496|2.36|422.0|5|1|sense	Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|39|2|sense	Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|39|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7735595703125	2	509.290017	1016.56548	2.1121	0.0010757	-0.82538	-0.00042036	1.2867	0.0006553	509.2893267350695	76.695	0.77463	76.695	76.518	77.293	0					34	18	3	0	0	0	0.027462	1	7684	7684		20.947	3.4789	1	1475400			44286	14368	36620	36643	47773	47773					0.05786046822890967
PSSKKSALI	9	Unmodified	_PSSKKSALI_					0	0	0		ENST00000495352.5_1_7:102124102-102135092:-|nuORF;ENST00000522223.1_7:102223281-102234330:-|nuORF;ENSG00000170667|ENST00000465829|RASA4B;ENSG00000105808|ENST00000262940|RASA4	ENST00000495352.5_1_7:102124102-102135092:-|nuORF	ENST00000495352.5_1_7:102124102-102135092:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.7532043457031	2	465.784567	929.554582	0.031616	1.4726E-05	-0.57036	-0.00026566	-0.53874	-0.00025094	465.7842522223472	47.619	1.9955	44.512	44.133	46.129	-3.1077					61	38	3	0	0	0	0.027392	1	2534	2534		44.117	0	1	176710			44287	2502	36621	36644	47774	47774					0.08698644448622872
PSSKPWLD	8	Unmodified	_PSSKPWLD_					0	0	0			REV__nc|ENSG00000130822|Q6P2M8-5|PNCK	REV__nc|ENSG00000130822|Q6P2M8-5|PNCK	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.75335693359375	2	465.239993	928.465432	0.021476	9.9915E-06	-4.257	-0.0019805	-4.2356	-0.0019706	465.237788718404	47.869	1.4726	44.762	44.237	45.709	-3.1077					39	28	2	0	0	0	0.028476	1	2570	2570		53.351	5.6941	1	318320	+		44288	28849	36622	36645	47775	47775					-0.0016619051090174253
PSSLDPFFSRE	11	Unmodified	_PSSLDPFFSRE_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	OvCa9_classI_Rep4_	4	427.87542724609375	3	427.875182	1280.60372	0.29787	0.00012745	1.4082	0.00060252	1.706	0.00072997	427.8757384772746	21.177	1.1305	19.839	19.595	20.726	-1.3386					50	22	3	0	0	0	0.72477	1	126	126		18.531	4.445	1	100150			44289	1754	36623	36646	47776	47776					-0.025361120530760672
PSSPRLPRA	9	Unmodified	_PSSPRLPRA_					0	0	0			REV__NISCH|p.L754Sfs*219|1|0.14|ENSG00000010322|chr3:52487751-52487751|C/-|frameshift_variant	REV__NISCH|p.L754Sfs*219|1|0.14|ENSG00000010322|chr3:52487751-52487751|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.7436828613281	2	490.785433	979.556313	0.2273	0.00011156	-0.099146	-4.8659E-05	0.12816	6.2897E-05	490.78529879962196	45.913	0.44523	45.913	45.624	46.069	0					14	9	2	0	0	0	0.027426	1	3193	3193		66.429	20.457	1	155910	+		44290	29253	36624	36647	47777	47777					0.06571698257232583
PSSQTFSRA	9	Unmodified	_PSSQTFSRA_					0	0	0			REV__ENSG00000203867|ENST00000369519|RBM20	REV__ENSG00000203867|ENST00000369519|RBM20	MULTI-MSMS	OvCa99_classI_Rep5	1	490.7436828613281	2	490.743431	979.472308	0.28664	0.00014066	-0.027349	-1.3421E-05	0.25929	0.00012724	490.7433415038778	45.789	0.48686	45.789	45.582	46.069	0					24	10	3	0	0	0	0.37135	1	3193	3193		54.776	1.4249	1	614280	+		44291	23116	36625	36648	47778	47778					-0.018248776303266823
PSSQVRKVSTL	11	Unmodified	_PSSQVRKVSTL_					0	0	0			REV__SORBS2|p.E881Dfs*37|1|0.67|ENSG00000154556|chr4:185615156-185615156|C/-|frameshift_variant	REV__SORBS2|p.E881Dfs*37|1|0.67|ENSG00000154556|chr4:185615156-185615156|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.69580078125	3	401.234822	1200.68264	1.4878	0.00059696	-3.2934	-0.0013214	-1.8056	-0.00072446	401.2334021354235	31.885	0.74577	31.885	31.708	32.453	0					50	14	7	0	0	0	0.025362	1	1379	1379		42.243	7.0644	1	763170	+		44292	20388	36626	36649	47779	47779					0.09032159971866349
PSSRFVRA	8	Unmodified	_PSSRFVRA_					0	0	0			REV__ENSG00000004864|ENST00000265631|SLC25A13	REV__ENSG00000004864|ENST00000265631|SLC25A13	MULTI-MSMS	OvCa9_classI_Rep4_	4	460.2591552734375	2	460.259051	918.503549	-0.48062	-0.00022121	-1.3549	-0.0006236	-1.8355	-0.00084481	460.258286152919	58.272	1.7494	54.924	54.543	56.292	-3.3478					64	34	3	0	0	0	0.39692	1	3826	3826		88.643	13.6	1	794340	+		44293	16384	36627	36650	47780	47780					0.041037401944208796
PSSRLKMFAKV	11	Unmodified	_PSSRLKMFAKV_					0	0	0		ENST00000464432.5_1_2:131100487-131103076:+|nuORF	ENST00000464432.5_1_2:131100487-131103076:+|nuORF	ENST00000464432.5_1_2:131100487-131103076:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	632.3594970703125	2	632.365733	1262.71691	-6.31	-0.0039902	-0.39664	-0.00025082	-6.7066	-0.004241	632.3652537766649	163.68	0.89803	162.05	161.68	162.57	-1.6336					70	24	4	0	0	0	0.71191	1	16147	16147		25.574	0	1	384570			44294	12252	36628	36651	47781	47781					0.09606284859091829
PSSRREEP	8	Unmodified	_PSSRREEP_					0	0	0		LRCH4|p.K594Lfs*7|1|0.06|ENSG00000077454|chr7:100575779-100575780|-/CAGCAGCAGCAGCAGGACAG|frameshift_variant;ENSG00000077454|ENST00000310300|LRCH4;ENST00000467201.5_1_7:100174858-100176198:-|nuORF	LRCH4|p.K594Lfs*7|1|0.06|ENSG00000077454|chr7:100575779-100575780|-/CAGCAGCAGCAGCAGGACAG|frameshift_variant	LRCH4|p.K594Lfs*7|1|0.06|ENSG00000077454|chr7:100575779-100575780|-/CAGCAGCAGCAGCAGGACAG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.301513671875	2	479.241055	956.467557	-0.26281	-0.00012595	-1.3194	-0.00063232	-1.5822	-0.00075827	479.2419320432345	58.877	0.5476	58.877	58.572	59.12	0					24	13	3	0	0	0	0.028476	1	5004	5004		73.975	7.5455	1	322610			44295	1573	36629	36652	47782	47782					-0.012417617730875463
PSSRVIIW	8	Unmodified	_PSSRVIIW_					0	0	0			REV__ENSG00000122641|ENST00000242208|INHBA	REV__ENSG00000122641|ENST00000242208|INHBA	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.26116943359375	2	479.279452	956.544351	-0.21533	-0.0001032	-3.5988	-0.0017248	-3.8141	-0.001828	479.2776407438604	33.493	0.59361	33.493	33.039	33.632	0					16	11	2	0	0	0	0.028476	1	1511	1511		8.2313	0	1	30750	+		44296	18606	36630	36653	47783	47783					0.0643408151404401
PSSSAQLQL	9	Unmodified	_PSSSAQLQL_					0	0	0		RAB11FIP5|p.Q575Pfs*30|1|0.03|ENSG00000135631|chr2:73076027-73076028|-/G|frameshift_variant;ENSG00000135631|ENST00000486777|RAB11FIP5	RAB11FIP5|p.Q575Pfs*30|1|0.03|ENSG00000135631|chr2:73076027-73076028|-/G|frameshift_variant	RAB11FIP5|p.Q575Pfs*30|1|0.03|ENSG00000135631|chr2:73076027-73076028|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.75335693359375	2	465.748182	929.481811	0.047899	2.2309E-05	-4.1873	-0.0019502	-4.1394	-0.0019279	465.7461692678625	47.531	0.44767	44.424	44.237	44.684	-3.1077					10	8	2	0	0	0	0.02741	1	2570	2570		51.335	0	1	112450			44297	4394	36631	36654	47784	47784					0.014248906552097651
PSSSKATPKV	10	Unmodified	_PSSSKATPKV_					0	0	0		ENSG00000145975|ENST00000274673|FAM217A	ENSG00000145975|ENST00000274673|FAM217A	ENSG00000145975|ENST00000274673|FAM217A	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.3051452636719	2	501.284931	1000.55531	-0.40226	-0.00020165	1.2597	0.00063149	0.85748	0.00042984	501.28574911189656	49.092	0.35019	49.092	48.895	49.245	0					16	7	3	0	0	0	0.026956	1	3662	3662		26.693	0	1	199430			44298	5257	36632	36655	47785	47785					0.05505439097669296
PSSSKATPKV	10	Unmodified	_PSSSKATPKV_					0	0	0		ENSG00000145975|ENST00000274673|FAM217A	ENSG00000145975|ENST00000274673|FAM217A	ENSG00000145975|ENST00000274673|FAM217A	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	501.284931	1000.55531	-0.81509	-0.00040859	-5.1311	-0.0025722	-5.9462	-0.0029808	501.2825491863037	52.421	0.6083	49.213	48.792	49.4	-3.208	0.060648	-0.0051339	NaN	14.137	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55983			44299	5257	36632	36655							0.05505439097669296
PSSTSSSGYW	10	Unmodified	_PSSTSSSGYW_					0	0	0		ZNF704|p.M192Lfs*38|1|0.06|ENSG00000164684|chr8:80670589-80670590|-/AGTGTCCAGA|frameshift_variant;ZNF704|p.S274Rfs*13|1|0.04|ENSG00000164684|chr8:80664920-80664921|-/T|frameshift_variant;ENSG00000164684|ENST00000327835|ZNF704	ZNF704|p.M192Lfs*38|1|0.06|ENSG00000164684|chr8:80670589-80670590|-/AGTGTCCAGA|frameshift_variant	ZNF704|p.M192Lfs*38|1|0.06|ENSG00000164684|chr8:80670589-80670590|-/AGTGTCCAGA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.2941284179688	2	529.724904	1057.43525	-1.8984	-0.0010056	-0.52149	-0.00027624	-2.4199	-0.0012819	529.7243453638007	45.191	0.67574	42.152	41.919	42.595	-3.0385					20	12	2	0	0	0	0.027056	1	2279	2279		9.7057	0	1	18813			44300	6475	36633	36656	47786	47786					-0.0911659396676896
PSSTSSSGYW	10	Unmodified	_PSSTSSSGYW_					0	0	0		ZNF704|p.M192Lfs*38|1|0.06|ENSG00000164684|chr8:80670589-80670590|-/AGTGTCCAGA|frameshift_variant;ZNF704|p.S274Rfs*13|1|0.04|ENSG00000164684|chr8:80664920-80664921|-/T|frameshift_variant;ENSG00000164684|ENST00000327835|ZNF704	ZNF704|p.M192Lfs*38|1|0.06|ENSG00000164684|chr8:80670589-80670590|-/AGTGTCCAGA|frameshift_variant	ZNF704|p.M192Lfs*38|1|0.06|ENSG00000164684|chr8:80670589-80670590|-/AGTGTCCAGA|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	529.724904	1057.43525	-0.62555	-0.00033137	-2.9049	-0.0015388	-3.5304	-0.0018702	530.2255411853166	45.082	0.1493	42.373	42.298	42.448	-2.7097	0.11019	-0.001842	NaN	9.7057	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5042.7			44301	6475	36633	36656							-0.0911659396676896
PSTGEKRFGY	10	Unmodified	_PSTGEKRFGY_					0	0	0		ENST00000527147.1_1_11:100537243-100537690:+|nuORF	ENST00000527147.1_1_11:100537243-100537690:+|nuORF	ENST00000527147.1_1_11:100537243-100537690:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.7637939453125	2	571.285463	1140.55637	-0.62617	-0.00035772	-2.7935	-0.0015959	-3.4197	-0.0019536	571.2834467189361	43.377	0.33754	43.377	43.227	43.565	0					11	7	2	0	0	0	0.026956	1	2881	2881		14.137	0	1	79490			44302	13227	36634	36657	47787	47787					-0.008283465334216089
PSTGETPSLGF	11	Unmodified	_PSTGETPSLGF_					0	0	0		chr11:27368627-27371615|93|13.72|0.3|5.53|-|2|None,LGR4|1	chr11:27368627-27371615|93|13.72|0.3|5.53|-|2|None,LGR4|1	chr11:27368627-27371615|93|13.72|0.3|5.53|-|2|None,LGR4|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	545.822021484375	2	546.764029	1091.5135	-1.269	-0.00069385	-2.3223	-0.0012697	-3.5913	-0.0019636	546.7628021732698	84.536	0.71008	82.99	82.64	83.351	-1.5462					24	13	2	0	0	0	0.025377	1	7243	7243		39.253	0	1	31800			44303	290	36635	36658	47788	47788					-0.028591613815024175
PSTQLLSLY	9	Unmodified	_PSTQLLSLY_					0	0	0		ENST00000522562.5_1_5:71523001-71533927:-|nuORF;ENSG00000113048|ENST00000261413|MRPS27;nc|ENSG00000113048|Q92552-2|MRPS27	ENST00000522562.5_1_5:71523001-71533927:-|nuORF	ENST00000522562.5_1_5:71523001-71533927:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.84417724609375	2	511.281857	1020.54916	-0.96219	-0.00049195	0.74496	0.00038088	-0.21723	-0.00011107	511.2815144092969	100.94	1.2671	98.673	98.29	99.557	-2.2665					78	25	4	0	0	0	0.027453	1	9083	9083		54.776	20.604	1	461300			44304	2945	36636	36659	47789	47789					0.03970920866140659
PSVLRFCL	8	Carbamidomethyl (C)	_PSVLRFC(Carbamidomethyl (C))L_	PSVLRFC(1)L		PSVLRFC(74)L		0	1	0			REV__ENSG00000168056|ENST00000301873|LTBP3	REV__ENSG00000168056|ENST00000301873|LTBP3	MULTI-MSMS	OvCa99_classI_Rep5	1	496.272216796875	2	496.273312	990.532072	1.6106	0.0007993	-2.1699	-0.0010769	-0.55933	-0.00027758	496.27171153447927	81.836	1.1106	81.836	81.455	82.565	0					59	26	5	0	0	0	0.53531	1	8435	8435		73.975	21.676	1	3515900	+		44305	21341	36637	36660	47790	47790	237				0.03642721779351632
PSVSCSITM	9	Carbamidomethyl (C),Oxidation (M)	_PSVSC(Carbamidomethyl (C))SITM(Oxidation (M))_	PSVSC(1)SITM	PSVSCSITM(1)	PSVSC(82)SITM	PSVSCSITM(82)	0	1	1			REV__nc|ENSG00000152128|Q8TC26-2|TMEM163	REV__nc|ENSG00000152128|Q8TC26-2|TMEM163	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.27252197265625	2	499.220085	996.425618	0.40593	0.00020265	-1.1594	-0.0005788	-0.75348	-0.00037615	499.72171256076626	89.652	0.74828	87.077	86.752	87.501	-2.575					29	14	3	0	0	0	0.027091	1	7710	7710		82.305	8.3303	1	27675	+		44306	28930	36638	36661	47791	47791	353	639			-0.07273821568151106
PSVSVGLKKKP	11	Unmodified	_PSVSVGLKKKP_					0	0	0			REV__ENSG00000158545|ENST00000301011|ZC3H18	REV__ENSG00000158545|ENST00000301011|ZC3H18	MULTI-MSMS	OvCa9_classI_Rep2	2	570.3582153320312	2	570.360973	1138.70739	-4.2157	-0.0024045	0.51987	0.00029652	-3.6958	-0.002108	570.3611382746453	152.47	1.2391	152.25	151.83	153.07	-0.22697					66	25	4	0	0	0	0.71498	1	15490	15490		24.519	0	1	86072	+		44307	20571	36639	36662	47792	47792					0.14358839845226612
PSVTRILII	9	Unmodified	_PSVTRILII_					0	0	0			REV__nc|ENSG00000176463|Q9UIG8-4|SLCO3A1	REV__nc|ENSG00000176463|Q9UIG8-4|SLCO3A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.329345703125	2	506.331685	1010.64882	1.7958	0.00090925	-2.1995	-0.0011137	-0.40371	-0.00020441	506.3304637303331	137.15	0.9731	135.61	135.23	136.2	-1.5437					47	18	3	0	0	0	0.46356	1	13330	13330		45.972	5.3996	1	101850	+		44308	21952	36640	36663	47793	47793					0.14391783270752967
PSVTRILII	9	Unmodified	_PSVTRILII_					0	0	0			REV__nc|ENSG00000176463|Q9UIG8-4|SLCO3A1	REV__nc|ENSG00000176463|Q9UIG8-4|SLCO3A1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	506.331685	1010.64882	-1.7243	-0.00087308	1.3614	0.00068934	-0.36288	-0.00018374	506.3322482005304	136.8	1.6593	135.72	135.31	136.97	-1.0858	0.055423	0.0016399	NaN	45.972	49	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43443	+		44309	21952	36640	36663							0.14391783270752967
PSVTRILII	9	Unmodified	_PSVTRILII_					0	0	0			REV__nc|ENSG00000176463|Q9UIG8-4|SLCO3A1	REV__nc|ENSG00000176463|Q9UIG8-4|SLCO3A1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	506.331685	1010.64882	1.7958	0.00090925	-2.1995	-0.0011137	-0.40371	-0.00020441	506.3304637303331	137.15	0.9731	135.61	135.23	136.2	-1.5437	-0.055423	-0.0019662	NaN	45.972	47	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101850	+		44310	21952	36640	36663							0.14391783270752967
PSVVGGAFP	9	Unmodified	_PSVVGGAFP_					0	0	0			REV__KIDINS220|p.H1622Qfs*20|1|0.07|ENSG00000134313|chr2:8731170-8731171|-/CACTTTGTTGGCAATTTTTAAAGCCC|frameshift_variant	REV__KIDINS220|p.H1622Qfs*20|1|0.07|ENSG00000134313|chr2:8731170-8731171|-/CACTTTGTTGGCAATTTTTAAAGCCC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	415.7205505371094	2	415.723978	829.433404	-0.9299	-0.00038658	-4.121	-0.0017132	-5.0509	-0.0020998	415.7221307706575	120.37	1.5373	119.02	118.72	120.26	-1.3444					61	29	4	0	0	0	0.59983	1	11338	11338		31.955	7.7521	1	298300	+		44311	19193	36641	36664	47794	47794					0.01186441805953109
PSVVRIGVPLS	11	Unmodified	_PSVVRIGVPLS_					0	0	0		CON__P01030;CON__ENSEMBL:ENSBTAP00000007350	CON__P01030	CON__P01030	MULTI-MSMS	OvCa9_classI_Rep3	3	562.3422241210938	2	562.345323	1122.67609	-2.9015	-0.0016316	-0.70711	-0.00039764	-3.6086	-0.0020293	562.3448419475409	142.33	4.504	141.32	140	144.5	-1.0106					205	90	3	0	0	0	0.72064	1	11985	11985		22.58	3.4761	1	106680		+	44312	613	36642	36665	47795	47795					0.11966266811145942
PSVWAAVT	8	Unmodified	_PSVWAAVT_					0	0	0		ENST00000293217.9_3_17:73975210-73975420:-|nuORF	ENST00000293217.9_3_17:73975210-73975420:-|nuORF	ENST00000293217.9_3_17:73975210-73975420:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	415.7216491699219	2	415.723978	829.433404	-0.9299	-0.00038658	-4.121	-0.0017132	-5.0509	-0.0020998	415.7221307706575	120.37	1.5373	119.02	118.72	120.26	-1.3444					61	29	4	0	0	0	0.73938	1	11313	11313		31.955	1.4512	1	298300			44313	10106	36643	36666	47796	47796					0.01186441805953109
PSWDYTRI	8	Unmodified	_PSWDYTRI_					0	0	0		nc|ENSG00000290746|Q8WTZ4|CA5BP1;ENST00000380334.6_1_X:15706900-15721312:+|nuORF	nc|ENSG00000290746|Q8WTZ4|CA5BP1	nc|ENSG00000290746|Q8WTZ4|CA5BP1	MSMS	OvCa99_classI_Rep5	1	519.2908325195312	2	519.256174	1036.49779	NaN	NaN	NaN	NaN	NaN	NaN	NaN	153.15	1	153.15	152.65	153.65	0								0	0	0	0.30129	1	17942	17942		31.955	2.7848	1				44314	11144	36644	36667	47797	47797					-0.018994031079273554
PSYNCLSPEI	10	Carbamidomethyl (C)	_PSYNC(Carbamidomethyl (C))LSPEI_	PSYNC(1)LSPEI		PSYNC(51)LSPEI		0	1	0		ENST00000373871.7_1_1:28298970-28299126:-|nuORF	ENST00000373871.7_1_1:28298970-28299126:-|nuORF	ENST00000373871.7_1_1:28298970-28299126:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	590.2680053710938	2	590.271164	1178.52777	-7.7051	-0.0045481	3.5254	0.0020809	-4.1797	-0.0024671	590.2732006658329	159.89	2.9332	158.56	157.96	160.89	-1.3316					148	58	4	0	0	0	0.52439	1	13878	13878		51.193	10.415	1	239760			44315	11017	36645	36668	47798	47798	116				-0.05434832224887032
PSYRGRDLP	9	Unmodified	_PSYRGRDLP_					0	0	0		ENSG00000143195|ENST00000271417|ILDR2	ENSG00000143195|ENST00000271417|ILDR2	ENSG00000143195|ENST00000271417|ILDR2	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.8092041015625	2	530.780348	1059.54614	-2.089	-0.0011088	3.9651	0.0021046	1.8761	0.00099582	530.7814005698536	61.525	0.82607	58.766	58.361	59.187	-2.7593					16	15	2	0	0	0	0.027462	1	4593	4593		21.96	0	1	13138			44316	5019	36646	36669	47799	47799					0.018750905319848243
PTAAEPFVHH	10	Unmodified	_PTAAEPFVHH_					0	0	0			REV__ENSG00000089723|ENST00000203664|OTUB2	REV__ENSG00000089723|ENST00000203664|OTUB2	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.73974609375	2	553.274898	1104.53524	-1.0046	-0.00055582	-0.12084	-6.6855E-05	-1.1254	-0.00062267	553.2749922531684	36.943	0.27172	36.943	36.751	37.023	0					8	5	2	0	0	0	0.026915	1	1991	1991		27.882	2.3082	1	40108	+		44317	17212	36647	36670	47800	47800					-0.012843118423006672
PTAASLPLLM	10	Unmodified	_PTAASLPLLM_					0	0	0		ENST00000414373.5_1_11:118967985-118971732:-|nuORF;nc|ENSG00000172269|Q9H3H5-3|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;ENSG00000172269|ENST00000354202|DPAGT1;ENST00000533687.1_1_11:118971334-118971544:-|nuORF	ENST00000414373.5_1_11:118967985-118971732:-|nuORF	ENST00000414373.5_1_11:118967985-118971732:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.3125	2	507.288628	1012.5627	0.43744	0.00022191	3.0719	0.0015583	3.5093	0.0017802	507.2902766966171	33.59	1.1395	30.802	30.409	31.548	-2.7881					36	22	2	0	0	0	0.027117	1	987	987		16.473	0	1	30385			44318	7287	36648	36671	47801	47801					0.05692455373741723
PTAGARHV	8	Unmodified	_PTAGARHV_					0	0	0		tr|A0A553SMS3|A0A553SMS3_NIACIXanthinedehydrogenasesubunitDOS=NialliacirculansOX=1397GN=pucDPE=4SV=1	tr|A0A553SMS3|A0A553SMS3_NIACIXanthinedehydrogenasesubunitDOS=NialliacirculansOX=1397GN=pucDPE=4SV=1	tr|A0A553SMS3|A0A553SMS3_NIACIXanthinedehydrogenasesubunitDOS=NialliacirculansOX=1397GN=pucDPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	405.7192077636719	2	404.724844	807.435135	1.9402	0.00078525	-2.6377	-0.0010675	-0.69747	-0.00028228	404.7237014983762	120.01	0.88279	118.98	118.72	119.61	-1.0271					32	17	2	0	0	0	0.028476	1	9118	9118		33.516	9.3128	1	74975			44319	33868	36649	36672	47802	47802					0.023714956145681754
PTALRCLA	8	Unmodified	_PTALRCLA_					0	0	0			REV__ENSG00000090776|ENST00000204961|EFNB1	REV__ENSG00000090776|ENST00000204961|EFNB1	MULTI-MSMS	OvCa99_classI_Rep5	1	422.7391052246094	2	422.739105	843.463658	2.5012	0.0010573	-4.0396	-0.0017077	-1.5384	-0.00065034	422.7372841652777	86.894	1.955	86.894	86.553	88.508	0					111	46	4	0	0	0	0.66704	1	9190	9190		50.025	5.4935	1	13090000	+		44320	17233	36650	36673	47803	47803					0.03566477199478868
PTALTRWTEEC	11	Unmodified	_PTALTRWTEEC_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.7283935546875	3	436.208055	1305.60234	-0.49986	-0.00021804	3.9168	0.0017085	3.4169	0.0014905	436.209977505794	53.643	0.51007	50.396	50.109	50.619	-3.2474					11	9	2	0	0	0	0.025908	1	3291	3291		41.08	19.3	1	7967.9			44321	1754	36651	36674	47804	47804					-0.038240694135083686
PTAVSATPVRA	11	Unmodified	_PTAVSATPVRA_					0	0	0		nc|ENSG00000249471|Q6AW86-2|ZNF324B	nc|ENSG00000249471|Q6AW86-2|ZNF324B	nc|ENSG00000249471|Q6AW86-2|ZNF324B	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.7052001953125	2	535.303655	1068.59276	0.083511	4.4704E-05	1.0795	0.00057785	1.163	0.00062256	535.3037880710934	32.099	0.54576	32.099	31.807	32.353	0					15	10	2	0	0	0	0.025418	1	1402	1402		47.96	0	1	67039			44322	15349	36652	36675	47805	47805					0.06120530363295984
PTAYCYTF	8	Unmodified	_PTAYCYTF_					0	0	0		ENSG00000146530|ENST00000275358|VWDE	ENSG00000146530|ENST00000275358|VWDE	ENSG00000146530|ENST00000275358|VWDE	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.7664794921875	2	483.207304	964.400055	-0.42486	-0.0002053	0.07091	3.4264E-05	-0.35395	-0.00017103	483.2070971063285	29.358	0.34918	29.358	29.237	29.586	0					12	6	3	0	0	0	0.028476	1	1052	1052		33.516	15.191	1	33953			44323	5297	36653	36676	47806	47806					-0.08356928028274524
PTCGDRIL	8	Carbamidomethyl (C)	_PTC(Carbamidomethyl (C))GDRIL_	PTC(1)GDRIL		PTC(61)GDRIL		0	1	0		tr|A0A553SJJ9|A0A553SJJ9_NIACISUFsystemNifUfamilyFe-SclusterassemblyproteinOS=NialliacirculansOX=1397GN=CEQ21_16715PE=3SV=1	tr|A0A553SJJ9|A0A553SJJ9_NIACISUFsystemNifUfamilyFe-SclusterassemblyproteinOS=NialliacirculansOX=1397GN=CEQ21_16715PE=3SV=1	tr|A0A553SJJ9|A0A553SJJ9_NIACISUFsystemNifUfamilyFe-SclusterassemblyproteinOS=NialliacirculansOX=1397GN=CEQ21_16715PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	466.2367248535156	2	466.236927	930.459301	0.31116	0.00014507	-0.31655	-0.00014759	-0.0053896	-2.5128E-06	466.23662450729495	43.901	2.5422	41.191	40.658	43.2	-2.7097					104	50	4	0	0	0	0.61436	1	2466	2466		60.972	9.6365	1	381230			44324	33511	36654	36677	47807	47807	380				-0.008710320140721706
PTCTTTSIAK	10	Unmodified	_PTCTTTSIAK_					0	0	0			REV__ENST00000534575.1_1_8:61300140-61300551:+|nuORF	REV__ENST00000534575.1_1_8:61300140-61300551:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.2702941894531	2	511.762975	1021.5114	-0.8618	-0.00044104	-1.3455	-0.00068858	-2.2073	-0.0011296	511.76195145507387	70.348	0.77605	66.867	66.639	67.415	-3.4812					25	15	2	0	0	0	0.026659	1	5302	5302		54.776	24.459	1	156810	+		44325	27269	36655	36678	47808	47808					0.001500866090168529
PTCTTTSIAK	10	Unmodified	_PTCTTTSIAK_					0	0	0			REV__ENST00000534575.1_1_8:61300140-61300551:+|nuORF	REV__ENST00000534575.1_1_8:61300140-61300551:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	511.762975	1021.5114	-0.41154	-0.00021061	-2.5482	-0.0013041	-2.9597	-0.0015147	511.76148038308366	69.517	0.49759	66.897	66.715	67.213	-2.6203	0.014892	-0.0006297	NaN	54.776	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32044	+		44326	27269	36655	36678							0.001500866090168529
PTDAWSVH	8	Unmodified	_PTDAWSVH_					0	0	0		ENSG00000075234|ENST00000381031|TTC38	ENSG00000075234|ENST00000381031|TTC38	ENSG00000075234|ENST00000381031|TTC38	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.766845703125	2	456.714142	911.413731	1.0458	0.00047765	-0.80525	-0.00036777	0.2406	0.00010989	456.71233023200824	37.394	0.19871	34.502	34.343	34.541	-2.8925					5	3	2	0	0	0	0.028476	1	1363	1363		33.516	3.0119	1	5614.7			44327	1526	36656	36679	47809	47809					-0.04551934204812369
PTDCQHLLK	9	Unmodified	_PTDCQHLLK_					0	0	0		ENSG00000151388|ENST00000504830|ADAMTS12;nc|ENSG00000151388|P58397-3|ADAMTS12	ENSG00000151388|ENST00000504830|ADAMTS12	ENSG00000151388|ENST00000504830|ADAMTS12	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.357177734375	2	527.771134	1053.52771	-0.92135	-0.00048626	-1.6755	-0.00088427	-2.5968	-0.0013705	527.7704988820591	50.384	0.39315	50.384	50.201	50.594	0					12	8	2	0	0	0	0.027462	1	3808	3808		37.159	3.6435	1	131260			44328	5550	36657	36680	47810	47810					0.0030921256577585154
PTDPSLGGVFI	11	Unmodified	_PTDPSLGGVFI_					0	0	0			REV__ENST00000514325.1_1_4:83279715-83279970:-|nuORF	REV__ENST00000514325.1_1_4:83279715-83279970:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.369873046875	2	551.792589	1101.57063	1.5914	0.00087812	-1.0583	-0.00058395	0.53311	0.00029416	551.7914533513704	118.65	0.80293	118.65	118.25	119.05	0					31	16	3	0	0	0	0.025298	1	13636	13636		56.721	30.028	1	248550	+		44329	19557	36658	36681	47811	47811					0.023903058948917533
PTEDLRRRIFF	11	Unmodified	_PTEDLRRRIFF_					0	0	0			REV__ENSG00000119927|ENST00000348367|GPAM	REV__ENSG00000119927|ENST00000348367|GPAM	MULTI-MSMS	OvCa9_classI_Rep3	3	483.9366760253906	3	483.936887	1448.78883	0.61076	0.00029557	-1.0159	-0.00049162	-0.40512	-0.00019605	483.9363500379811	67.695	1.7974	64.808	64.441	66.239	-2.8873					108	35	5	0	0	0	0.71321	2	2873	2873;2907		25.126	1.7481	1	342710	+		44330	18474	36659	36682	47812;47813	47812					0.08238915537140201
PTEDLRRRIFF	11	Unmodified	_PTEDLRRRIFF_					0	0	0			REV__ENSG00000119927|ENST00000348367|GPAM	REV__ENSG00000119927|ENST00000348367|GPAM	MULTI-MATCH	OvCa99_classI_Rep5	1		3	483.936887	1448.78883	0.12039	5.8263E-05	-0.9476	-0.00045858	-0.8272	-0.00040031	483.93659607605576	64.861	0.47983	64.861	64.631	65.111	0	0.11068	-0.00010962	NaN	25.126	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	529810	+		44331	18474	36659	36682							0.08238915537140201
PTEDLRRRIFF	11	Unmodified	_PTEDLRRRIFF_					0	0	0			REV__ENSG00000119927|ENST00000348367|GPAM	REV__ENSG00000119927|ENST00000348367|GPAM	MULTI-MATCH	OvCa9_classI_Rep2	2		3	483.936887	1448.78883	-0.65586	-0.0003174	0.19933	9.6463E-05	-0.45653	-0.00022093	483.93690532173616	67.267	1.4316	64.606	64.248	65.68	-2.661	-0.1443	0.0015555	NaN	25.126	83	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271830	+		44332	18474	36659	36682							0.08238915537140201
PTEDLRRRIFF	11	Unmodified	_PTEDLRRRIFF_					0	0	0			REV__ENSG00000119927|ENST00000348367|GPAM	REV__ENSG00000119927|ENST00000348367|GPAM	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	483.936887	1448.78883	0.6476	0.0003134	-1.1745	-0.0005684	-0.52694	-0.00025501	483.9363408648492	68.217	1.4696	64.727	64.333	65.802	-3.4902	-0.023847	-0.0004391	NaN	25.126	81	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253260	+		44333	18474	36659	36682							0.08238915537140201
PTETMPTIVRV	11	Unmodified	_PTETMPTIVRV_					0	0	0		tr|A0A553SU15|A0A553SU15_NIACITransportpermeaseproteinOS=NialliacirculansOX=1397GN=CEQ21_06050PE=3SV=1	tr|A0A553SU15|A0A553SU15_NIACITransportpermeaseproteinOS=NialliacirculansOX=1397GN=CEQ21_06050PE=3SV=1	tr|A0A553SU15|A0A553SU15_NIACITransportpermeaseproteinOS=NialliacirculansOX=1397GN=CEQ21_06050PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	622.336669921875	2	622.339381	1242.66421	-4.541	-0.002826	-0.0059953	-3.7311E-06	-4.547	-0.0028298	622.3392173202388	154.08	1.2081	153.07	152.74	153.95	-1.0076					67	24	4	0	0	0	0.72516	1	13261	13261		13.454	0.64233	1	199770			44334	34562	36660	36683	47814	47814					0.05258282005638648
PTFAVKTQ	8	Unmodified	_PTFAVKTQ_					0	0	0			REV__ENSG00000107263|ENST00000683357|RAPGEF1	REV__ENSG00000107263|ENST00000683357|RAPGEF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	447.24102783203125	2	446.25036	890.486168	0.30926	0.00013801	-1.6217	-0.00072367	-1.3124	-0.00058566	446.2487975165967	55.62	0.28399	55.62	55.48	55.764	0					10	6	3	0	0	0	0.028476	1	4552	4552		40.778	2.9666	1	160460	+		44335	17839	36661	36684	47815	47815					0.03654399868753444
PTFHSVDLF	9	Unmodified	_PTFHSVDLF_					0	0	0			REV__ENSG00000170276|ENST00000304298|HSPB2	REV__ENSG00000170276|ENST00000304298|HSPB2	MULTI-MSMS	OvCa9_classI_Rep3	3	531.76611328125	2	531.766374	1061.5182	1.9209	0.0010215	-2.6095	-0.0013876	-0.68857	-0.00036616	531.7649080143301	61.868	1.4496	58.799	58.077	59.526	-3.0685					60	37	2	0	0	0	0.67509	1	2198	2198		23.042	1.0826	1	27546	+		44336	21528	36662	36685	47816	47816					-0.010102324481067626
PTFIIVIVL	9	Unmodified	_PTFIIVIVL_					0	0	0		tr|A0A553STZ3|A0A553STZ3_NIACIChromatetransporterOS=NialliacirculansOX=1397GN=CEQ21_05925PE=3SV=1	tr|A0A553STZ3|A0A553STZ3_NIACIChromatetransporterOS=NialliacirculansOX=1397GN=CEQ21_05925PE=3SV=1	tr|A0A553STZ3|A0A553STZ3_NIACIChromatetransporterOS=NialliacirculansOX=1397GN=CEQ21_05925PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.30279541015625	2	507.833529	1013.6525	-1.3409	-0.00068095	-3.369	-0.0017109	-4.7099	-0.0023918	507.831726172702	91.493	1.3314	89.469	89.029	90.361	-2.0241					70	26	4	0	0	0	0.027462	1	5702	5702		52.299	18.784	1	558060			44337	34553	36663	36686	47817	47817					0.1462245304460339
PTFIVGEEI	9	Unmodified	_PTFIVGEEI_					0	0	0			REV__tr|A0A553SQZ6|A0A553SQZ6_NIACIPLP-dependentaminotransferasefamilyprotein(Fragment)OS=NialliacirculansOX=1397GN=CEQ21_00005PE=4SV=1	REV__tr|A0A553SQZ6|A0A553SQZ6_NIACIPLP-dependentaminotransferasefamilyprotein(Fragment)OS=NialliacirculansOX=1397GN=CEQ21_00005PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.7874450683594	2	502.768583	1003.52261	1.9658	0.00098835	0.6097	0.00030654	2.5755	0.0012949	502.7687333913464	133.98	0.23927	133.98	133.82	134.06	0					7	4	2	0	0	0	0.027462	1	15575	15575		21.96	0	1	24309	+		44338	30674	36664	36687	47818	47818					0.020992319748188493
PTFLFPAAVL	10	Unmodified	_PTFLFPAAVL_					0	0	0		ENST00000216185.6_1_22:36863441-36863582:-|nuORF	ENST00000216185.6_1_22:36863441-36863582:-|nuORF	ENST00000216185.6_1_22:36863441-36863582:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	538.309814453125	2	538.312961	1074.61137	-0.75667	-0.00040733	-4.037	-0.0021732	-4.7937	-0.0025805	538.3104984778253	106.9	1.3198	106.59	106.32	107.64	-0.30836					69	26	4	0	0	0	0.56767	1	9967	9967		45.952	6.6991	1	342170			44339	9667	36665	36688	47819	47819					0.07704692005131619
PTFLNNHMLL	10	Unmodified	_PTFLNNHMLL_					0	0	0		nc|ENSG00000290894|Q96TA0|PCDHB18P	nc|ENSG00000290894|Q96TA0|PCDHB18P	nc|ENSG00000290894|Q96TA0|PCDHB18P	MULTI-MSMS	OvCa99_classI_Rep5	1	600.317138671875	2	600.315709	1198.61686	2.2955	0.001378	-3.5353	-0.0021223	-1.2398	-0.00074427	600.3134424418894	99.898	1.2409	99.898	99.529	100.77	0					57	29	3	0	0	0	0.53885	1	11058	11058		49.442	1.7842	1	1017400			44340	15397	36666	36689	47820	47820					0.025500475253011246
PTFLRNRNRRR	11	Unmodified	_PTFLRNRNRRR_					0	0	0		tr|A0A553SPA4|A0A553SPA4_NIACICelldivisionproteinFtsZOS=NialliacirculansOX=1397GN=ftsZPE=3SV=1	tr|A0A553SPA4|A0A553SPA4_NIACICelldivisionproteinFtsZOS=NialliacirculansOX=1397GN=ftsZPE=3SV=1	tr|A0A553SPA4|A0A553SPA4_NIACICelldivisionproteinFtsZOS=NialliacirculansOX=1397GN=ftsZPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	495.9583740234375	3	495.958908	1484.85489	-4.8163	-0.0023887	4.3088	0.002137	-0.50748	-0.00025169	495.96094978154576	162.14	1.4092	161.91	160.94	162.35	-0.22696					77	27	3	0	0	0	0.72516	1	16521	16521		13.508	5.4736	1	83644			44341	34022	36667	36690	47821	47821					0.1318616922255842
PTGAPSPSGGE	11	Unmodified	_PTGAPSPSGGE_					0	0	0			REV__ENSG00000149596|ENST00000372980|JPH2	REV__ENSG00000149596|ENST00000372980|JPH2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.7738342285156	2	478.719621	955.42469	-0.15876	-7.6004E-05	1.1847	0.00056712	1.0259	0.00049112	478.7197449795141	56.03	0.91009	52.736	52.464	53.374	-3.2944					25	17	3	0	0	0	0.025257	1	3619	3619		44.377	7.2181	1	26640	+		44342	20171	36668	36691	47822	47822					-0.05480576621164346
PTGHPVQFY	9	Unmodified	_PTGHPVQFY_					0	0	0		nc|ENSG00000138443|Q9NYB9-4|ABI2;nc|ENSG00000138443|Q9NYB9|ABI2;ABI2|p.E467Kfs*27|1|0.4|ENSG00000138443|chr2:203427208-203427208|G/-|frameshift_variant;ENSG00000138443|ENST00000261018|ABI2	nc|ENSG00000138443|Q9NYB9-4|ABI2	nc|ENSG00000138443|Q9NYB9-4|ABI2	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.2581787109375	2	523.258717	1044.50288	-0.58979	-0.00030861	-0.017323	-9.0642E-06	-0.60711	-0.00031768	523.258531387231	20.8	3.0068	19.461	18.803	21.81	-1.3386					123	66	2	0	0	0	0.55588	1	94	94		37.159	0	1	51368			44343	9	36669	36692	47823	47823					-0.01759099245282414
PTGIFHGK	8	Unmodified	_PTGIFHGK_					0	0	0		tr|A0A7D6VM15|A0A7D6VM15_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13555PE=4SV=1	tr|A0A7D6VM15|A0A7D6VM15_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13555PE=4SV=1	tr|A0A7D6VM15|A0A7D6VM15_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13555PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	428.7387390136719	2	428.73742	855.460287	0.78455	0.00033637	0.28413	0.00012182	1.0687	0.00045819	428.7374386945436	74.224	0.97567	74.224	73.945	74.92	0					60	24	3	0	0	0	0.70469	1	7321	7321		42.396	10.441	1	2864500			44344	34643	36670	36693	47824	47824					0.026775504171496323
PTGIKVVM	8	Unmodified	_PTGIKVVM_					0	0	0		ENSG00000170043|ENST00000303731|TRAPPC1	ENSG00000170043|ENST00000303731|TRAPPC1	ENSG00000170043|ENST00000303731|TRAPPC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	422.7391052246094	2	422.751682	843.48881	2.5778	0.0010898	-2.158	-0.00091232	0.41978	0.00017746	422.7506842083365	86.935	0.25153	86.935	86.761	87.013	0					8	5	2	0	0	0	0.028476	1	9190	9190		57.811	11.045	1	168080			44345	7068	36671	36694	47825	47825					0.060805320020676845
PTGITDHIVQV	11	Unmodified	_PTGITDHIVQV_					0	0	0		nc|ENSG00000109180|Q9NX40-4|OCIAD1	nc|ENSG00000109180|Q9NX40-4|OCIAD1	nc|ENSG00000109180|Q9NX40-4|OCIAD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	590.2975463867188	2	590.322045	1178.62954	2.4076	0.0014213	1.4185	0.00083738	3.8262	0.0022587	590.3224089399118	113.31	0.78323	113.31	112.79	113.57	0					36	18	3	0	0	0	0.025332	1	12916	12916		49.536	0	1	375210			44346	14951	36672	36695	47826	47826					0.04736782189161204
PTGLAHGR	8	Unmodified	_PTGLAHGR_					0	0	0		ENSG00000165655|ENST00000372524|ZNF503;nc|ENSG00000165655|Q96F45-2|ZNF503	ENSG00000165655|ENST00000372524|ZNF503	ENSG00000165655|ENST00000372524|ZNF503	MULTI-SECPEP	OvCa9_classI_Rep4_	4	405.71832275390625	2	404.724844	807.435135	0.58526	0.00023687	-0.92383	-0.0003739	-0.33857	-0.00013703	404.7242326329715	120.37	1.0807	119.02	118.67	119.75	-1.3444					31	20	3	0	0	0	0.028476	1	11381	11381		29.15	0	1	68650			44347	6585	36673	36696	47827	47827					0.023714956145681754
PTGLLLTVLV	10	Unmodified	_PTGLLLTVLV_					0	0	0		ENST00000435340.6_1_17:17409107-17410505:-|nuORF;ENST00000477595.5_1_17:17409107-17410369:-|nuORF;nc|ENSG00000133027|Q9UBM1|PEMT;ENSG00000133027|ENST00000255389|PEMT	ENST00000435340.6_1_17:17409107-17410505:-|nuORF	ENST00000435340.6_1_17:17409107-17410505:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.787841796875	2	513.333893	1024.65323	-0.79963	-0.00041048	-2.0294	-0.0010418	-2.8291	-0.0014523	513.332429362762	39.21	0.44469	36.5	36.36	36.805	-2.7097					12	8	2	0	0	0	0.026915	1	1912	1912		20.947	3.582	1	11521			44348	4189	36674	36697	47828	47828					0.14189247693639118
PTGSDPRHTA	10	Unmodified	_PTGSDPRHTA_					0	0	0			REV__ENST00000517976.5_1_8:96047742-96070162:+|nuORF	REV__ENST00000517976.5_1_8:96047742-96070162:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2885131835938	2	519.751787	1037.48902	-0.8119	-0.00042199	-2.2519	-0.0011704	-3.0638	-0.0015924	520.2528545042899	54.068	0.32318	54.068	53.929	54.253	0					11	7	2	0	0	0	0.026891	1	4348	4348		31.53	14.165	1	184040	+		44349	27024	36675	36698	47829	47829					-0.028223767443705583
PTGTLIIRK	9	Unmodified	_PTGTLIIRK_					0	0	0			REV__ENSG00000197275|ENST00000336148|RAD54B	REV__ENSG00000197275|ENST00000336148|RAD54B	MULTI-MSMS	OvCa99_classI_Rep5	1	499.82000732421875	2	499.821484	997.628415	-0.1893	-9.4615E-05	-2.6807	-0.0013399	-2.87	-0.0014345	499.8200562601491	22.406	0.51857	22.406	22.228	22.746	0					25	11	3	0	0	0	0.68424	1	223	223		21.96	0	1	749840	+		44350	22907	36676	36699	47830	47830					0.1295061261095043
PTHDGVLIL	9	Unmodified	_PTHDGVLIL_					0	0	0		ENST00000401470.3_1_9:138375345-138375855:+|nuORF	ENST00000401470.3_1_9:138375345-138375855:+|nuORF	ENST00000401470.3_1_9:138375345-138375855:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.2748107910156	2	482.776742	963.538931	2.3596	0.0011392	3.3785	0.0016311	5.7381	0.0027702	482.77623524889276	98.767	0.82497	98.767	98.29	99.115	0					46	19	4	0	0	0	0.027462	1	10944	10944		23.042	0	1	1177400			44351	11415	36677	36700	47831	47831					0.05570357931583203
PTITGNLENQ	10	Unmodified	_PTITGNLENQ_					0	0	0		ENSG00000128052|ENST00000263923|KDR;nc|ENSG00000128052|P35968-3|KDR	ENSG00000128052|ENST00000263923|KDR	ENSG00000128052|ENST00000263923|KDR	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.7955322265625	2	543.774928	1085.5353	-2.7891	-0.0015166	-3.092	-0.0016813	-5.881	-0.003198	543.7713253683289	108.22	0.59228	106.49	106.17	106.76	-1.7256					14	11	2	0	0	0	0.026956	1	9908	9908		26.693	3.6504	1	24184			44352	3864	36678	36701	47832	47832					-0.004043566329528403
PTITGNLENQ	10	Unmodified	_PTITGNLENQ_					0	0	0		ENSG00000128052|ENST00000263923|KDR;nc|ENSG00000128052|P35968-3|KDR	ENSG00000128052|ENST00000263923|KDR	ENSG00000128052|ENST00000263923|KDR	MULTI-MATCH	OvCa99_classI_Rep5	1		2	543.774928	1085.5353	2.5168	0.0013686	1.8565	0.0010095	4.3733	0.0023781	543.7753396377288	106.28	0.39329	106.28	106.01	106.41	0	-0.16831	0.001774	NaN	67.494	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	177860			44353	3864	36678	36701							-0.004043566329528403
PTITRRKI	8	Unmodified	_PTITRRKI_					0	0	0		ENST00000419554.6_1_2:38523614-38525308:-|nuORF;ENST00000406122.5_2_2:38523614-38525308:-|nuORF	ENST00000419554.6_1_2:38523614-38525308:-|nuORF	ENST00000419554.6_1_2:38523614-38525308:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	492.8184814453125	2	492.819276	983.623999	-1.0524	-0.00051866	0.60887	0.00030006	-0.44358	-0.0002186	492.81937696825383	61.985	2.6287	59.225	58.882	61.511	-2.7593					139	50	4	0	0	0	0.73938	1	4667	4667		31.955	5.1588	1	798600			44354	11477	36679	36702	47833	47833					0.13153148188030173
PTITRRKI	8	Unmodified	_PTITRRKI_					0	0	0		ENST00000419554.6_1_2:38523614-38525308:-|nuORF;ENST00000406122.5_2_2:38523614-38525308:-|nuORF	ENST00000419554.6_1_2:38523614-38525308:-|nuORF	ENST00000419554.6_1_2:38523614-38525308:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.8201599121094	2	492.819276	983.623999	-0.15633	-7.7044E-05	-0.23118	-0.00011393	-0.38752	-0.00019098	492.8190082291614	62.974	3.1431	59.501	59.195	62.338	-3.4731					139	64	4	0	0	0	0.71369	1	4436	4436		40.573	1.7665	1	1132000			44355	11477	36679	36702	47834	47834					0.13153148188030173
PTIWLRWRLQQ	11	Unmodified	_PTIWLRWRLQQ_					0	0	0		ENST00000339686.7_1_19:36002448-36003323:-|nuORF	ENST00000339686.7_1_19:36002448-36003323:-|nuORF	ENST00000339686.7_1_19:36002448-36003323:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.7713928222656	3	499.62101	1495.8412	-0.19295	-9.6404E-05	-0.799	-0.0003992	-0.99195	-0.0004956	499.62074742595746	38.949	0.49684	36.022	35.849	36.346	-2.9264					11	9	2	0	0	0	0.02625	1	1592	1592		18.531	7.9443	1	14103			44356	10552	36680	36703	47835	47835					0.11311498670784204
PTKASLYGAIL	11	Unmodified	_PTKASLYGAIL_					0	0	0		ENSG00000072954|ENST00000187762|TMEM38A	ENSG00000072954|ENST00000187762|TMEM38A	ENSG00000072954|ENST00000187762|TMEM38A	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3295288085938	2	567.331882	1132.64921	-0.48412	-0.00027465	-3.1025	-0.0017602	-3.5866	-0.0020348	567.3299446868054	145.54	4.8872	144.11	142.68	147.57	-1.4357					247	95	4	0	0	0	0.68021	1	14368	14368		36.447	0.82846	1	208760			44357	1483	36681	36704	47836	47836					0.0881915819995811
PTKFNFDKPQ	10	Unmodified	_PTKFNFDKPQ_					0	0	0			REV__nc|ENSG00000147316|Q8NEM0-3|MCPH1	REV__nc|ENSG00000147316|Q8NEM0-3|MCPH1	MULTI-SECPEP	OvCa99_classI_Rep5	1	611.3682861328125	2	611.316763	1220.61897	1.1054	0.00067572	4.2822	0.0026178	5.3876	0.0032935	611.3192632556562	157.38	0.99915	157.38	157.15	158.15	0					24	19	2	0	0	0	0.027088	1	18470	18470		14.137	0	1	28910	+		44358	20057	36682	36705	47837	47837					0.01748799534743739
PTKIVKPSPVE	11	Unmodified	_PTKIVKPSPVE_					0	0	0			REV__ENSG00000133422|ENST00000397641|MORC2	REV__ENSG00000133422|ENST00000397641|MORC2	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8560180664062	2	597.858264	1193.70197	-2.7036	-0.0016164	-0.53743	-0.00032131	-3.241	-0.0019377	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.68399	1	12491	12491		35.152	0	1	591030	+		44359	19144	36683	36706	47838	47838					0.11287116262769814
PTKKKAMFLAS	11	Unmodified	_PTKKKAMFLAS_					0	0	0			REV__ENSG00000125651|ENST00000394456|GTF2F1	REV__ENSG00000125651|ENST00000394456|GTF2F1	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3532104492188	2	611.354834	1220.69511	-2.3862	-0.0014588	4.2549	0.0026013	1.8688	0.0011425	611.3572929291362	147.43	3.7918	146.48	144.56	148.35	-0.9512					254	75	5	0	0	0	0.72324	1	12398	12398		21.686	1.2039	1	250910	+		44360	18736	36684	36707	47839	47839					0.09359480110538243
PTKRKLGSN	9	Unmodified	_PTKRKLGSN_					0	0	0			REV__nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	REV__nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.7983703613281	2	500.79854	999.582528	-2.9685	-0.0014866	2.7229	0.0013636	-0.24564	-0.00012302	500.7998390995193	149.78	1.7039	148.35	147.52	149.23	-1.4344					90	34	4	0	0	0	0.64427	1	14778	14778		26.693	2.4902	1	346200	+		44361	21298	36685	36708	47840	47840					0.08271967428709104
PTKSPVQPVVV	11	Unmodified	_PTKSPVQPVVV_					0	0	0		nc|ENSG00000170959|M0R2J8|DCDC1;ENSG00000170959|ENST00000684477|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.842529296875	2	575.845156	1149.67576	-2.8608	-0.0016474	-0.58729	-0.00033819	-3.4481	-0.0019856	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.69808	1	14744	14744		30.318	4.8675	1	356230			44362	7158	36686	36709	47841	47841					0.10690847091268552
PTKSVLAL	8	Unmodified	_PTKSVLAL_					0	0	0		ENST00000342784.6_1_19:15225167-15225317:+|nuORF	ENST00000342784.6_1_19:15225167-15225317:+|nuORF	ENST00000342784.6_1_19:15225167-15225317:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	414.7616882324219	2	414.763104	827.511654	-1.3763	-0.00057084	-1.7682	-0.00073337	-3.1445	-0.0013042	414.7623056204016	140.83	3.4972	139.8	137.66	141.16	-1.0339					138	70	4	0	0	0	0.73626	1	11603	11603		33.516	0	1	1080700			44363	10585	36687	36710	47842	47842					0.09099874391165486
PTKTFAKLV	9	Unmodified	_PTKTFAKLV_					0	0	0			REV__ENST00000374379.8_1_1:25140698-25153599:+|nuORF	REV__ENST00000374379.8_1_1:25140698-25153599:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.808349609375	2	502.810585	1003.60662	-0.34275	-0.00017234	-1.9507	-0.00098082	-2.2934	-0.0011532	502.8091476669163	115.94	0.94045	114.58	114.2	115.14	-1.3645					45	18	4	0	0	0	0.53483	1	10828	10828		39.253	0.44669	1	240060	+		44364	25061	36688	36711	47843	47843					0.10495807862378115
PTKVYGGKIL	10	Unmodified	_PTKVYGGKIL_					0	0	0			REV__tr|A0A7D7A1B8|A0A7D7A1B8_9CLOTRibosomealternativerescuefactorArfAOS=ClostridiumintestinaleOX=36845GN=HZF06_16085PE=4SV=1	REV__tr|A0A7D7A1B8|A0A7D7A1B8_9CLOTRibosomealternativerescuefactorArfAOS=ClostridiumintestinaleOX=36845GN=HZF06_16085PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	538.3269653320312	2	538.329142	1074.64373	-5.6218	-0.0030264	1.9414	0.0010451	-3.6804	-0.0019813	538.3300395836094	158.87	1.4268	157.61	157.3	158.73	-1.267					79	27	5	0	0	0	0.79917	1	13744	13744		19.104	0.84144	1	528870	+		44365	32483	36689	36712	47844	47844					0.10939479408125408
PTLGAKTRKK	10	Unmodified	_PTLGAKTRKK_					0	0	0		tr|A0A553SHA9|A0A553SHA9_NIACILargeribosomalsubunitproteinuL2OS=NialliacirculansOX=1397GN=rplBPE=3SV=1	tr|A0A553SHA9|A0A553SHA9_NIACILargeribosomalsubunitproteinuL2OS=NialliacirculansOX=1397GN=rplBPE=3SV=1	tr|A0A553SHA9|A0A553SHA9_NIACILargeribosomalsubunitproteinuL2OS=NialliacirculansOX=1397GN=rplBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	550.3499755859375	2	550.35094	1098.68733	0.35656	0.00019624	-0.53554	-0.00029473	-0.17897	-9.8497E-05	550.3505114476876	31.822	1.2363	29.112	28.789	30.025	-2.7097					67	24	4	0	0	0	0.58067	1	1018	1018		44.377	0	1	380910			44366	33253	36690	36713	47845	47845					0.1419308890526736
PTLKQRLSS	9	Unmodified	_PTLKQRLSS_					0	0	0		tr|A0A553SLS5|A0A553SLS5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_21240PE=4SV=1	tr|A0A553SLS5|A0A553SLS5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_21240PE=4SV=1	tr|A0A553SLS5|A0A553SLS5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_21240PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.8289794921875	2	515.306198	1028.59784	-0.07148	-3.6834E-05	4.2546	0.0021924	4.1831	0.0021556	515.3080717055767	134.33	1.0859	133.21	132.62	133.7	-1.1226					41	21	3	0	0	0	0.027462	1	10762	10762		25.574	5.0922	1	39682			44367	33759	36691	36714	47846	47846					0.08468834225891442
PTLLIVDL	8	Unmodified	_PTLLIVDL_					0	0	0			REV__tr|A0A7D6VNV1|A0A7D6VNV1_9CLOTNADkinaseOS=ClostridiumintestinaleOX=36845GN=nadKPE=3SV=1	REV__tr|A0A7D6VNV1|A0A7D6VNV1_9CLOTNADkinaseOS=ClostridiumintestinaleOX=36845GN=nadKPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	442.2671813964844	2	442.278586	882.54262	0.37854	0.00016742	-3.1842	-0.0014083	-2.8057	-0.0012409	442.27739999847927	59.617	0.193	59.617	59.533	59.726	0					5	4	2	0	0	0	0.028476	1	5158	5158		35.201	0	1	67250	+		44368	31208	36692	36715	47847	47847					0.09665027705409557
PTLPPPIPPK	10	Unmodified	_PTLPPPIPPK_					0	0	0		ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.310791015625	2	528.826235	1055.63792	-0.82004	-0.00043366	-4.3379	-0.002294	-5.1579	-0.0027277	528.8237485297477	100.11	0.77571	98.432	98.102	98.878	-1.6738					17	15	2	0	0	0	0.027056	1	6817	6817		14.865	1.9057	1	57545			44369	7453	36693	36716	47848	47848					0.11232380896444738
PTLPPPIPPK	10	Unmodified	_PTLPPPIPPK_					0	0	0		ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	528.826235	1055.63792	-1.2237	-0.00064711	-2.9794	-0.0015756	-4.2031	-0.0022227	528.8244065131004	99.273	1.3395	98.38	98.156	99.496	-0.89305	-0.093257	-0.00050919	NaN	26.693	35	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41203			44370	7453	36693	36716							0.11232380896444738
PTLPPPIPPK	10	Unmodified	_PTLPPPIPPK_					0	0	0		ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	ENSG00000174282|ENST00000380599|ZBTB4	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	528.826235	1055.63792	-1.8407	-0.0009734	-1.7614	-0.00093149	-3.6021	-0.0019049	528.8251306802083	100.63	0.56532	98.363	98.135	98.7	-2.2665	-0.11005	0.00077903	NaN	26.693	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58165			44371	7453	36693	36716							0.11232380896444738
PTLPPRAQRL	10	Unmodified	_PTLPPRAQRL_					0	0	0		ENST00000525455.5_1_11:62530233-62533976:+|nuORF	ENST00000525455.5_1_11:62530233-62533976:+|nuORF	ENST00000525455.5_1_11:62530233-62533976:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	574.8467407226562	2	574.848564	1147.68258	-0.79965	-0.00045968	-1.4861	-0.00085428	-2.2858	-0.001314	574.8475519868417	25.218	0.50206	25.218	25.042	25.544	0					24	9	4	0	0	0	0.72319	1	539	539		27.882	5.9224	1	237320			44372	13193	36694	36717	47849	47849					0.1146420476250114
PTLRAKLQ	8	Unmodified	_PTLRAKLQ_					0	0	0		ENSG00000127720|ENST00000248306|METTL25;ENST00000547985.1_1_12:82752311-82780584:+|nuORF;ENST00000548569.5_1_12:82752311-82782582:+|nuORF;ENST00000547357.5_1_12:82752311-82853681:+|nuORF	ENSG00000127720|ENST00000248306|METTL25	ENSG00000127720|ENST00000248306|METTL25	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.9380798339844	2	463.792727	925.5709	-1.4068	-0.00065248	1.4953	0.00069351	0.088465	4.1029E-05	463.79320236509096	44.32	0.76125	41.283	41.108	41.869	-3.0368					27	14	3	0	0	0	0.028476	1	2245	2245		30.504	1.3541	1	104710			44373	3844	36695	36718	47850	47850					0.1051377040537318
PTLRINIK	8	Unmodified	_PTLRINIK_					0	0	0			REV__nc|ENSG00000278540|Q13085-3|ACACA	REV__nc|ENSG00000278540|Q13085-3|ACACA	MULTI-MSMS	OvCa9_classI_Rep3	3	477.8091125488281	2	477.808377	953.6022	2.0965	0.0010017	1.8424	0.00088031	3.9389	0.0018821	477.8090798382224	125.72	1.4063	124.66	124.26	125.67	-1.0519					71	26	4	0	0	0	0.61436	1	9809	9809		60.972	5.4677	1	261640	+		44374	23642	36696	36719	47851	47851					0.12354343439460536
PTLTGPRKQS	10	Unmodified	_PTLTGPRKQS_					0	0	0		ENSG00000114656|ENST00000645291|CFAP92;nc|ENSG00000114656|Q9ULG3-2|CFAP92;nc|ENSG00000114656|Q9ULG3|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.796875	2	542.809105	1083.60366	0.68511	0.00037188	3.7436	0.0020321	4.4287	0.002404	542.8111929182313	66.853	0.39544	66.853	66.619	67.014	0					13	9	2	0	0	0	0.026956	1	6238	6238		14.137	0	1	215950			44375	3032	36697	36720	47852	47852					0.06519932737569434
PTLVPYRVG	9	Unmodified	_PTLVPYRVG_					0	0	0			REV__nc|ENSG00000146151|Q8TB92|HMGCLL1	REV__nc|ENSG00000146151|Q8TB92|HMGCLL1	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2898254394531	2	501.292559	1000.57057	-1.4695	-0.00073667	-2.6975	-0.0013522	-4.167	-0.0020889	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.69123	1	11228	11228		20.947	2.6225	1	97838	+		44376	19997	36698	36721	47853	47853					0.07030350685522535
PTMANFLHTSH	11	Unmodified	_PTMANFLHTSH_					0	0	0			REV__tr|A0A7D6VRG5|A0A7D6VRG5_9CLOTN-acetylglucosamine-6-phosphatedeacetylaseOS=ClostridiumintestinaleOX=36845GN=nagAPE=3SV=1	REV__tr|A0A7D6VRG5|A0A7D6VRG5_9CLOTN-acetylglucosamine-6-phosphatedeacetylaseOS=ClostridiumintestinaleOX=36845GN=nagAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.5599670410156	3	419.201124	1254.58154	0.26812	0.0001124	4.199	0.0017602	4.4671	0.0018726	419.5363279210813	43.094	0.26081	43.094	42.883	43.143	0					6	5	2	0	0	0	0.026007	1	2818	2818		16.53	1.8362	1	19750	+		44377	31415	36699	36722	47854	47854					-0.035566150025033494
PTPGTRSCLA	10	Unmodified	_PTPGTRSCLA_					0	0	0		nc|ENSG00000143772|P27987-2|ITPKB;ENSG00000143772|ENST00000429204|ITPKB	nc|ENSG00000143772|P27987-2|ITPKB	nc|ENSG00000143772|P27987-2|ITPKB	MULTI-MSMS	OvCa99_classI_Rep5	1	501.7536315917969	2	501.755484	1001.49641	-0.4393	-0.00022042	-3.3986	-0.0017053	-3.8379	-0.0019257	501.753690825358	58.873	1.0711	58.873	58.655	59.726	0					59	27	4	0	0	0	0.3094	1	5022	5022		79.713	11.228	1	13391000			44378	5093	36700	36723	47855	47855					-0.004273604683248777
PTPLTLFW	8	Unmodified	_PTPLTLFW_					0	0	0		ENST00000402198.5_1_3:9518747-9519122:+|nuORF	ENST00000402198.5_1_3:9518747-9519122:+|nuORF	ENST00000402198.5_1_3:9518747-9519122:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.7740783691406	2	487.770929	973.527304	-0.58422	-0.00028496	-0.99711	-0.00048636	-1.5813	-0.00077133	487.7701614385493	46.256	0.15833	43.183	43.083	43.241	-3.0724					4	2	2	0	0	0	0.028476	1	2410	2410		12.959	0	1	12115			44379	11427	36701	36724	47856	47856					0.039481609082372415
PTPMPVLF	8	Unmodified	_PTPMPVLF_					0	0	0			REV__ACADS|p.V373Afs*19|1|0.32|ENSG00000122971|chr12:120739325-120739355|CGTGACAGAGATGCCGGCAGAGCGGCACTAC/-|frameshift_variant	REV__ACADS|p.V373Afs*19|1|0.32|ENSG00000122971|chr12:120739325-120739355|CGTGACAGAGATGCCGGCAGAGCGGCACTAC/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	451.2473449707031	2	451.246232	900.477911	2.042	0.00092146	-2.9069	-0.0013117	-0.8649	-0.00039028	451.24481802677957	118.7	0.94261	118.7	118.11	119.05	0					34	19	3	0	0	0	0.63104	1	13608	13608		57.453	6.1172	1	178050	+		44380	15553	36702	36725	47857	47857					0.023691296277888796
PTPPPCRA	8	Unmodified	_PTPPPCRA_					0	0	0		nc|ENSG00000243156|Q7RTP6-5|MICAL3	nc|ENSG00000243156|Q7RTP6-5|MICAL3	nc|ENSG00000243156|Q7RTP6-5|MICAL3	MULTI-SECPEP	OvCa99_classI_Rep5	1	420.6863708496094	2	419.71563	837.416708	1.4882	0.00062463	-3.2633	-0.0013697	-1.7751	-0.00074502	419.714140378091	101.35	0.54327	101.35	101.15	101.69	0					21	12	2	0	0	0	0.028476	1	11292	11292		25.45	10.786	1	563730			44381	15342	36703	36726	47858	47858					-0.008503823516548437
PTPPSTPVPL	10	Unmodified	_PTPPSTPVPL_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.3255615234375	2	503.2844	1004.55425	0.088073	4.4326E-05	0.87629	0.00044102	0.96436	0.00048535	503.2839190992773	114.81	0.26234	113.42	113.2	113.46	-1.3977					5	4	2	0	0	0	0.026639	1	10654	10654		44.117	0	1	7983.9			44382	9552	36704	36727	47859	47859					0.0521522472874949
PTPSQRPPS	9	Unmodified	_PTPSQRPPS_					0	0	0			REV__HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|29|1|sense	REV__HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|29|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.3057556152344	2	483.753798	965.493044	-0.54929	-0.00026572	1.3471	0.00065167	0.79781	0.00038595	483.75454605067125	51.373	0.75406	48.199	48.072	48.826	-3.1734					18	14	2	0	0	0	0.027447	1	3035	3035		47.657	0	1	32942	+		44383	28272	36705	36728	47860	47860					0.008917127493418775
PTQKPSPHPV	10	Unmodified	_PTQKPSPHPV_					0	0	0		RAB11FIP5-UBE2E3|1|fusion;ENST00000493523.2_1_2:73302651-73316730:-|nuORF;nc|ENSG00000135631|Q9BXF6|RAB11FIP5	RAB11FIP5-UBE2E3|1|fusion	RAB11FIP5-UBE2E3|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	544.2969970703125	2	544.298373	1086.58219	1.7002	0.00092542	-4.4021	-0.002396	-2.7019	-0.0014706	544.2957460381283	28.078	0.84905	25.368	25.15	25.999	-2.7097					27	17	2	0	0	0	0.71192	1	549	549		29.15	2.3535	1	48650			44384	15536	36706	36729	47861	47861					0.042365477088424086
PTQRLRVA	8	Unmodified	_PTQRLRVA_					0	0	0		ENSG00000092096|ENST00000354772|SLC22A17;nc|ENSG00000092096|Q8WUG5|SLC22A17	ENSG00000092096|ENST00000354772|SLC22A17	ENSG00000092096|ENST00000354772|SLC22A17	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.7880554199219	2	470.787976	939.561398	-0.18553	-8.7345E-05	-1.1363	-0.00053496	-1.3218	-0.00062231	470.78744487463723	40.717	3.4773	37.763	37.112	40.589	-2.9541					147	66	5	0	0	0	0.74229	1	1755	1755		30.504	1.3541	1	6500500			44385	1886	36707	36730	47862	47862					0.08920002119850778
PTQRNPVPTKK	11	Unmodified	_PTQRNPVPTKK_					0	0	0		SVA_D_dup912|chr11:73935626-73937666:-|1.861451030615439|0.3832838640500095|2.28|429.0|80|3|anti-sense	SVA_D_dup912|chr11:73935626-73937666:-|1.861451030615439|0.3832838640500095|2.28|429.0|80|3|anti-sense	SVA_D_dup912|chr11:73935626-73937666:-|1.861451030615439|0.3832838640500095|2.28|429.0|80|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3690185546875	2	633.369861	1264.72517	-4.8824	-0.0030923	3.9881	0.002526	-0.89421	-0.00056637	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.71789	1	13157	13157		23.523	2.6855	1	765700			44386	32934	36708	36731	47863	47863					0.10339555100040343
PTQVVIVPVAQ	11	Unmodified	_PTQVVIVPVAQ_					0	0	0		tr|A0A7D6ZGA3|A0A7D6ZGA3_9CLOTProline--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=proSPE=3SV=1	tr|A0A7D6ZGA3|A0A7D6ZGA3_9CLOTProline--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=proSPE=3SV=1	tr|A0A7D6ZGA3|A0A7D6ZGA3_9CLOTProline--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=proSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8433227539062	2	575.845156	1149.67576	-2.8608	-0.0016474	-0.58729	-0.00033819	-3.4481	-0.0019856	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.72064	1	14660	14660		22.58	1.6327	1	356230			44387	35537	36709	36732	47864	47864					0.10690847091268552
PTRDTPLHPY	10	Unmodified	_PTRDTPLHPY_					0	0	0		ENST00000564176.5_1_16:31487200-31487686:+|nuORF	ENST00000564176.5_1_16:31487200-31487686:+|nuORF	ENST00000564176.5_1_16:31487200-31487686:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	598.8109130859375	2	598.806562	1195.59857	1.5805	0.00094641	3.8095	0.0022812	5.39	0.0032276	598.8087101763716	111.27	0.89409	111.27	110.8	111.7	0					51	19	4	0	0	0	0.48398	1	12636	12636		56.434	14.038	1	2317900			44388	13801	36710	36733	47865	47865					0.00859628874968621
PTRGPWVRLL	10	Unmodified	_PTRGPWVRLL_					0	0	0			REV__ENST00000392381.7_1_3:197024090-197024929:-|nuORF	REV__ENST00000392381.7_1_3:197024090-197024929:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8557739257812	2	597.858932	1193.70331	-3.1766	-0.0018991	-1.0809	-0.0006462	-4.2574	-0.0025453	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.62299	1	14978	14978		39.253	5.0803	1	436470	+		44389	25259	36711	36734	47866	47866					0.11420795142180395
PTRIMMVSCR	10	Unmodified	_PTRIMMVSCR_					0	0	0			REV__JMJD1C-CTNNA3|1|fusion	REV__JMJD1C-CTNNA3|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	596.320556640625	2	597.301221	1192.58789	1.2828	0.00076619	1.0987	0.00065625	2.3814	0.0014224	597.3018195335229	90.168	1.0886	88.866	88.482	89.571	-1.302					45	21	3	0	0	0	0.026931	1	7938	7938		30.318	0	1	59413	+		44390	22350	36712	36735	47867	47867					-0.0007013636700321513
PTRKKKDR	8	Unmodified	_PTRKKKDR_					0	0	0			REV__ENSG00000186448|ENST00000344387|ZNF197	REV__ENSG00000186448|ENST00000344387|ZNF197	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.3088989257812	2	514.819807	1027.62506	-0.33422	-0.00017206	2.4511	0.0012619	2.1169	0.0010898	514.8210603567783	98.563	0.99499	97.669	97.41	98.405	-0.89306					56	19	4	0	0	0	0.028476	1	8928	8928		18.324	0	1	128270	+		44391	22586	36713	36736	47868	47868					0.1123536255693125
PTRPVQPSL	9	Unmodified	_PTRPVQPSL_					0	0	0			REV__ENST00000473243.5_1_19:19766211-19767540:-|nuORF	REV__ENST00000473243.5_1_19:19766211-19767540:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.7569885253906	2	497.787641	993.56073	0.088827	4.4217E-05	-1.0388	-0.00051708	-0.94993	-0.00047286	497.7870491616081	78.98	1.318	77.24	76.712	78.03	-1.7398					52	25	3	0	0	0	0.027462	1	6617	6617		23.042	0	1	66761	+		44392	26326	36714	36737	47869	47869					0.06369162680130103
PTRQKLPA	8	Unmodified	_PTRQKLPA_					0	0	0		ENSG00000138162|ENST00000369005|TACC2;TACC2|p.S2567Ifs*13|1|0.16|ENSG00000138162|chr10:122226455-122226456|-/A|frameshift_variant;nc|ENSG00000138162|O95359-3|TACC2	ENSG00000138162|ENST00000369005|TACC2	ENSG00000138162|ENST00000369005|TACC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	455.77716064453125	2	455.777077	909.5396	0.0087953	4.0087E-06	-0.87875	-0.00040051	-0.86995	-0.00039651	455.7767083832948	39.55	2.1484	36.624	36.346	38.494	-2.9264					122	41	5	0	0	0	0.57734	3	1619	1619;1675;1701		68.787	4.5796	1	3879400			44393	4664	36715	36738	47870;47871;47872	47870					0.08121197371258404
PTRRGGKW	8	Unmodified	_PTRRGGKW_					0	0	0		ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENST00000474381.1_1_6:31323854-31324663:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.2715759277344	2	479.272493	956.530432	-4.561	-0.002186	1.8433	0.00088345	-2.7177	-0.0013025	479.2731551410573	155.53	0.63069	154.04	153.82	154.45	-1.4911					29	16	2	0	0	0	0.74229	1	15400	15400		30.504	5.0535	1	63614			44394	12432	36716	36739	47873	47873					0.05042848805612721
PTSSFLPL	8	Unmodified	_PTSSFLPL_					0	0	0			REV__nc|ENSG00000110274|Q9UPV0-2|CEP164	REV__nc|ENSG00000110274|Q9UPV0-2|CEP164	MULTI-SECPEP	OvCa99_classI_Rep5	1	431.7295837402344	2	431.239461	860.46437	-0.44341	-0.00019122	-2.7881	-0.0012023	-3.2315	-0.0013936	431.2381576072858	25.668	0.24979	25.668	25.544	25.793	0					7	4	2	0	0	0	0.028476	1	595	595		35.201	6.9464	1	37496	+		44395	17977	36717	36740	47874	47874					0.028555951201951757
PTSSTPPLPS	10	Unmodified	_PTSSTPPLPS_					0	0	0		CTTNBP2|p.S468Kfs*13|1|0.11|ENSG00000077063|chr7:117791793-117791794|-/T|frameshift_variant;ENSG00000077063|ENST00000160373|CTTNBP2	CTTNBP2|p.S468Kfs*13|1|0.11|ENSG00000077063|chr7:117791793-117791794|-/T|frameshift_variant	CTTNBP2|p.S468Kfs*13|1|0.11|ENSG00000077063|chr7:117791793-117791794|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.2917785644531	2	492.25584	982.497126	0.73258	0.00036061	-2.7808	-0.0013689	-2.0483	-0.0010083	492.2549796709029	83.101	0.61642	81.502	81.115	81.731	-1.5988					12	12	2	0	0	0	0.026752	1	7087	7087		27.882	0	1	10350			44396	697	36718	36741	47875	47875					0.005177574523941075
PTSSYPTRLI	10	Unmodified	_PTSSYPTRLI_					0	0	0		ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	MULTI-SECPEP	OvCa9_classI_Rep2	2	567.3485107421875	2	567.811313	1133.60807	1.5001	0.00085179	-1.7227	-0.00097818	-0.22258	-0.00012638	567.8103179266025	89.996	1.6914	88.694	88.037	89.728	-1.302					76	33	3	0	0	0	0.026956	1	8039	8039		42.396	13.247	1	303380			44397	7384	36719	36742	47876	47876					0.04661397160452907
PTSTPRGIPP	10	Unmodified	_PTSTPRGIPP_					0	0	0			REV__nc|ENSG00000075151|O43432-2|EIF4G3	REV__nc|ENSG00000075151|O43432-2|EIF4G3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.2702941894531	2	511.785099	1021.55564	-0.86392	-0.00044214	0.21374	0.00010939	-0.65018	-0.00033275	511.7850333361581	70.41	1.3105	66.929	66.589	67.899	-3.4812					37	26	2	0	0	0	0.02676	1	5302	5302		41.427	0	1	83274	+		44398	16351	36720	36743	47877	47877					0.04572858817527958
PTTAVPLL	8	Unmodified	_PTTAVPLL_					0	0	0		ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	OvCa9_classI_Rep3	3	406.2484130859375	2	406.249829	810.485105	-1.2292	-0.00049936	-1.8965	-0.00077046	-3.1257	-0.0012698	406.24894809520566	140.8	1.576	139.77	139.38	140.96	-1.0339					88	31	4	0	0	0	0.69415	2	11604	11604;11628		44.531	6.9464	1	902300			44399	7920	36721	36744	47878;47879	47878					0.07228185499855044
PTTFPPEII	9	Unmodified	_PTTFPPEII_					0	0	0			REV__tr|A0A7D7ACR7|A0A7D7ACR7_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_20330PE=4SV=1	REV__tr|A0A7D7ACR7|A0A7D7ACR7_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_20330PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	507.7784729003906	2	507.778951	1013.54335	-2.4343	-0.0012361	2.2711	0.0011532	-0.16321	-8.2874E-05	507.7799378627202	140.33	1.3285	139.29	138.64	139.97	-1.0339					59	26	4	0	0	0	0.55588	1	11563	11563		37.159	5.2042	1	82161	+		44400	32691	36722	36745	47880	47880					0.03711822354478045
PTVARPLAR	9	Unmodified	_PTVARPLAR_					0	0	0			REV__ENSG00000105219|ENST00000430325|CCNP	REV__ENSG00000105219|ENST00000430325|CCNP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.8045654296875	2	490.803626	979.592698	-1.1838	-0.00058103	2.3192	0.0011383	1.1354	0.00055726	490.8039800637408	50.289	1.033	47.147	46.871	47.904	-3.1416					47	19	4	0	0	0	0.027462	1	2938	2938		24.203	0	1	132260	+		44401	17705	36723	36746	47881	47881					0.10208575153933452
PTVARPLAR	9	Unmodified	_PTVARPLAR_					0	0	0			REV__ENSG00000105219|ENST00000430325|CCNP	REV__ENSG00000105219|ENST00000430325|CCNP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	490.803626	979.592698	-0.51791	-0.00025419	4.2129	0.0020677	3.695	0.0018135	490.80556352097557	49.855	0.94379	47.061	46.736	47.68	-2.794	-0.043054	4.0335E-05	NaN	17.365	45	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121520	+		44402	17705	36723	36746							0.10208575153933452
PTVIPRRKV	9	Unmodified	_PTVIPRRKV_					0	0	0			REV__ENSG00000136014|ENST00000258499|USP44	REV__ENSG00000136014|ENST00000258499|USP44	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.3244018554688	2	533.3482	1064.68185	-0.22793	-0.00012156	-0.44567	-0.0002377	-0.6736	-0.00035926	533.3478740405518	41.109	0.35946	41.109	40.926	41.285	0					13	7	3	0	0	0	0.027462	1	2542	2542		42.396	3.59	1	55320	+		44403	19350	36724	36747	47882	47882					0.15209410113470767
PTVMKIHVVL	10	Unmodified	_PTVMKIHVVL_					0	0	0			REV__ENSG00000018510|ENST00000264167|AGPS	REV__ENSG00000018510|ENST00000264167|AGPS	MULTI-MSMS	OvCa9_classI_Rep3	3	568.8458251953125	2	568.846645	1135.67874	1.1361	0.00064626	-1.1496	-0.00065395	-0.013528	-7.6955E-06	568.845786397459	122.98	2.0826	121.95	121	123.08	-1.034					125	39	4	0	0	0	0.67931	1	9502	9502		32.812	3.6629	1	474050	+		44404	16531	36725	36748	47883	47883					0.11632398944448141
PTVPIKPPC	9	Unmodified	_PTVPIKPPC_					0	0	0		nc|ENSG00000145349|Q13557|CAMK2D;nc|ENSG00000145349|Q13557-3|CAMK2D;nc|ENSG00000145349|Q13557-6|CAMK2D;nc|ENSG00000145349|Q13557-4|CAMK2D;nc|ENSG00000145349|Q13557-11|CAMK2D;ENSG00000145349|ENST00000511664|CAMK2D	nc|ENSG00000145349|Q13557|CAMK2D	nc|ENSG00000145349|Q13557|CAMK2D	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.2899169921875	2	476.270238	950.525924	0.84296	0.00040148	-2.8695	-0.0013666	-2.0265	-0.00096516	476.2687450646782	159.17	0.39323	159.17	158.94	159.33	0					11	7	2	0	0	0	0.027462	1	18636	18636		37.159	11.709	1	36707			44405	5217	36726	36749	47884	47884					0.048682035478236685
PTVPLSPWPE	10	Unmodified	_PTVPLSPWPE_					0	0	0			REV__PCNT|p.A2734Qfs*36|1|0.3|ENSG00000160299|chr21:46431663-46431664|-/CAGAA|frameshift_variant	REV__PCNT|p.A2734Qfs*36|1|0.3|ENSG00000160299|chr21:46431663-46431664|-/CAGAA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.7930297851562	2	561.795132	1121.57571	2.7673	0.0015547	1.2286	0.00069024	3.996	0.0022449	561.7957441375627	137.39	0.57883	137.39	137.01	137.59	0					18	11	2	0	0	0	0.026956	1	16015	16015		9.1829	0	1	80518	+		44406	20654	36727	36750	47885	47885					0.019786097574751693
PTWETRVT	8	Unmodified	_PTWETRVT_					0	0	0			REV__nc|ENSG00000168477|P22105-1|TNXB	REV__nc|ENSG00000168477|P22105-1|TNXB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.2897033691406	2	495.256174	988.497795	-1.2105	-0.00059952	-1.3682	-0.00067763	-2.5788	-0.0012772	495.25639576102793	106.99	1.0476	105.11	104.64	105.69	-1.8784					33	19	3	0	0	0	0.028476	1	9815	9815		33.516	22.65	1	54486	+		44407	21378	36728	36751	47886	47886					0.0030859689210274155
PTWPSHSLG	9	Unmodified	_PTWPSHSLG_					0	0	0			REV__ENST00000374710.7_1_9:108210409-108226598:+|nuORF	REV__ENST00000374710.7_1_9:108210409-108226598:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	491.25335693359375	2	491.243067	980.47158	-1.405	-0.00069018	1.1832	0.00058126	-0.22173	-0.00010892	491.24348914728495	62.984	0.21276	60.24	60.161	60.374	-2.7444					5	3	2	0	0	0	0.027449	1	4753	4753		31.955	0	1	7426.7	+		44408	25066	36729	36752	47887	47887					-0.019436722793670924
PTYIEDFLLT	10	Unmodified	_PTYIEDFLLT_					0	0	0		nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6;nc|ENSG00000158987|Q8TEU7-6|RAPGEF6	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	MULTI-MSMS	OvCa99_classI_Rep5	1	606.3142700195312	2	606.313354	1210.61216	3.0243	0.0018337	0.89062	0.00053999	3.9149	0.0023737	606.3138243429273	89.552	1.592	89.552	88.677	90.269	0					87	38	3	0	0	0	0.59703	1	9566	9566		42.396	5.9494	1	1328000			44409	5982	36730	36753	47888	47888					0.015274418635272013
PTYIEDFLLT	10	Unmodified	_PTYIEDFLLT_					0	0	0		nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6;nc|ENSG00000158987|Q8TEU7-6|RAPGEF6	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3139038085938	2	606.313354	1210.61216	-0.36546	-0.00022158	1.1935	0.00072365	0.82807	0.00050207	606.313846558734	100.21	4.8548	97.886	97.315	102.17	-2.3253					183	94	4	0	0	0	0.59703	1	8940	8940		42.396	3.1433	1	584000			44410	5982	36730	36753	47889	47889					0.015274418635272013
PTYMPDLVL	9	Unmodified	_PTYMPDLVL_					0	0	0		FNIP2|p.D1024Efs*59|1|0.07|ENSG00000052795|chr4:158891567-158891568|-/AG|frameshift_variant;ENSG00000052795|ENST00000264433|FNIP2;nc|ENSG00000052795|Q9P278-2|FNIP2;ENST00000505130.1_1_4:159791513-159810990:+|nuORF	FNIP2|p.D1024Efs*59|1|0.07|ENSG00000052795|chr4:158891567-158891568|-/AG|frameshift_variant	FNIP2|p.D1024Efs*59|1|0.07|ENSG00000052795|chr4:158891567-158891568|-/AG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7588500976562	2	524.772811	1047.53107	-0.98746	-0.00051819	-0.20623	-0.00010822	-1.1937	-0.00062641	524.7736425571336	49.423	0.26303	49.423	49.287	49.55	0					7	5	2	0	0	0	0.027462	1	3684	3684		23.042	0	1	282790			44411	1194	36731	36754	47890	47890					0.009204626197742982
PTYSVQWV	8	Unmodified	_PTYSVQWV_					0	0	0			REV__ENST00000563868.1_1_16:1818048-1818822:+|nuORF	REV__ENST00000563868.1_1_16:1818048-1818822:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	490.24517822265625	2	490.247818	978.481082	-1.2971	-0.00063592	-4.1064	-0.0020132	-5.4036	-0.0026491	490.24574571549454	62.48	3.0118	59.721	59.187	62.199	-2.7593					88	57	2	0	0	0	0.74229	1	4714	4714		30.504	1.3541	1	956700	+		44412	19582	36732	36755	47891	47891					-0.009019039938493734
PVAAASHR	8	Unmodified	_PVAAASHR_					0	0	0		tr|A0A553SJD7|A0A553SJD7_NIACI3-hydroxyacyl-CoAdehydrogenase/enoyl-CoAhydratasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_16645PE=4SV=1	tr|A0A553SJD7|A0A553SJD7_NIACI3-hydroxyacyl-CoAdehydrogenase/enoyl-CoAhydratasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_16645PE=4SV=1	tr|A0A553SJD7|A0A553SJD7_NIACI3-hydroxyacyl-CoAdehydrogenase/enoyl-CoAhydratasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_16645PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.7192687988281	2	404.724844	807.435135	2.5505	0.0010322	-0.86716	-0.00035096	1.6833	0.00068128	404.7246366511829	119.45	0.63702	119.45	119.24	119.88	0					20	15	2	0	0	0	0.028476	1	13702	13702		33.516	0	1	259890			44413	33494	36733	36756	47892	47892					0.023714956145568067
PVAAPKQKL	9	Unmodified	_PVAAPKQKL_					0	0	0			REV__ENST00000415912.6_1_1:21544061-21544241:-|nuORF	REV__ENST00000415912.6_1_1:21544061-21544241:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	475.578369140625	2	476.302927	950.591301	0.76506	0.0003644	-0.47927	-0.00022828	0.28579	0.00013612	476.30236406820717	78.832	1.5025	76.492	76.011	77.513	-2.3399					53	29	2	0	0	0	0.027462	1	4221	4221		18.324	1.8513	1	38802	+		44414	25538	36734	36757	47893	47893					0.11402941065182404
PVAAPQRQF	9	Unmodified	_PVAAPQRQF_					0	0	0			REV__nc|ENSG00000187889|Q5VWT5-2|FYB2	REV__nc|ENSG00000187889|Q5VWT5-2|FYB2	MSMS	OvCa9_classI_Rep3	3	507.2812194824219	2	507.279983	1012.54541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.87	1	78.548	78.048	79.048	-2.3226								0	0	0	0.17121	1	4459	4459		47.916	3.7988	1		+		44415	22673	36735	36758	47894	47894					0.03964295882940405
PVACPVPLEL	10	Unmodified	_PVACPVPLEL_					0	0	0		ENSG00000106128|ENST00000326139|GHRHR	ENSG00000106128|ENST00000326139|GHRHR	ENSG00000106128|ENST00000326139|GHRHR	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.2879638671875	2	519.288628	1036.5627	-1.9387	-0.0010067	-2.1853	-0.0011348	-4.1239	-0.0021415	519.2873108396527	126.9	0.89249	125.47	125.24	126.14	-1.4357					22	17	2	0	0	0	0.64063	1	12095	12095		37.159	5.6293	1	55929			44416	2532	36736	36759	47895	47895					0.04588455373709621
PVACPVPLEL	10	Unmodified	_PVACPVPLEL_					0	0	0		ENSG00000106128|ENST00000326139|GHRHR	ENSG00000106128|ENST00000326139|GHRHR	ENSG00000106128|ENST00000326139|GHRHR	MULTI-MATCH	OvCa9_classI_Rep2	2		2	519.288628	1036.5627	0.84125	0.00043685	-5.1043	-0.0026506	-4.263	-0.0022137	519.2860550189125	125.65	0.79271	125.42	125.06	125.85	-0.2359	-0.065885	-0.000867	NaN	37.159	28	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42585			44417	2532	36736	36759							0.04588455373709621
PVACPVPLEL	10	Unmodified	_PVACPVPLEL_					0	0	0		ENSG00000106128|ENST00000326139|GHRHR	ENSG00000106128|ENST00000326139|GHRHR	ENSG00000106128|ENST00000326139|GHRHR	MULTI-MATCH	OvCa9_classI_Rep3	3		2	519.288628	1036.5627	1.5837	0.00082241	-5.4096	-0.0028091	-3.8259	-0.0019867	519.2854211538344	126.64	0.99101	125.56	125.34	126.33	-1.0715	0.081319	-0.0011841	NaN	37.159	26	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50279			44418	2532	36736	36759							0.04588455373709621
PVAEGHEKR	9	Unmodified	_PVAEGHEKR_					0	0	0		ENSG00000101493|ENST00000443185|ZNF516	ENSG00000101493|ENST00000443185|ZNF516	ENSG00000101493|ENST00000443185|ZNF516	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.95550537109375	2	511.772522	1021.53049	-2.1224	-0.0010862	-1.9688	-0.0010076	-4.0912	-0.0020938	512.271941194922	49.334	0.20835	46.193	46.043	46.251	-3.1416					5	3	2	0	0	0	0.027462	1	2771	2771		27.882	1.0861	1	6563.5			44419	2184	36737	36760	47896	47896					0.020588040149391418
PVAGAVLTVT	10	Unmodified	_PVAGAVLTVT_					0	0	0			REV__nc|ENSG00000204001|Q6JVE9|LCN8	REV__nc|ENSG00000204001|Q6JVE9|LCN8	MULTI-MSMS	OvCa9_classI_Rep4_	4	464.2801818847656	2	464.279118	926.543683	-1.0006	-0.00046456	0.8113	0.00037667	-0.18929	-8.7885E-05	464.27930928166757	65.637	1.5087	62.152	61.84	63.349	-3.4854					67	30	4	0	0	0	0.41846	1	4744	4744		65.803	21.426	1	579410	+		44420	29096	36738	36761	47897	47897					0.07747242074333371
PVAGAVLTVT	10	Unmodified	_PVAGAVLTVT_					0	0	0			REV__nc|ENSG00000204001|Q6JVE9|LCN8	REV__nc|ENSG00000204001|Q6JVE9|LCN8	MULTI-MATCH	OvCa9_classI_Rep2	2		2	464.279118	926.543683	0.42232	0.00019608	-0.56052	-0.00026024	-0.1382	-6.4162E-05	464.2788623282279	64.975	1.3802	62.251	61.811	63.191	-2.7245	0.049671	-0.00083677	NaN	65.803	57	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123320	+		44421	29096	36738	36761							0.07747242074333371
PVAGGLAPVPL	11	Unmodified	_PVAGGLAPVPL_					0	0	0		ENST00000437807.6_1_17:80407331-80408471:-|nuORF;ENST00000577696.5_1_17:80407155-80408531:-|nuORF;ENST00000582456.1_1_17:80408051-80408471:-|nuORF	ENST00000437807.6_1_17:80407331-80408471:-|nuORF	ENST00000437807.6_1_17:80407331-80408471:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	495.8019104003906	2	495.80276	989.590967	0.25835	0.00012809	-0.60387	-0.0002994	-0.34552	-0.00017131	495.8023876292267	130.3	1.0385	129.19	128.78	129.82	-1.1121					34	20	2	0	0	0	0.69331	1	10332	10332		31.955	0	1	54401			44422	11890	36739	36762	47898	47898					0.09575521345323068
PVAGREELLH	10	Unmodified	_PVAGREELLH_					0	0	0		ENST00000366472.5_1_1:249119294-249120038:-|nuORF;ENST00000475978.1_1_1:249119294-249119579:-|nuORF	ENST00000366472.5_1_1:249119294-249120038:-|nuORF	ENST00000366472.5_1_1:249119294-249120038:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.7421875	2	560.809105	1119.60366	3.1746	0.0017803	-0.50602	-0.00028378	2.6686	0.0014966	560.8087084036157	96.118	0.71597	96.118	95.743	96.459	0					29	16	3	0	0	0	0.026681	1	10528	10528		52.937	8.8199	1	1010200			44423	10816	36740	36763	47899	47899					0.04863932737566756
PVAIAAAKRKI	11	Unmodified	_PVAIAAAKRKI_					0	0	0		tr|A0A553SPQ4|A0A553SPQ4_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_26810PE=4SV=1	tr|A0A553SPQ4|A0A553SPQ4_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_26810PE=4SV=1	tr|A0A553SPQ4|A0A553SPQ4_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_26810PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.8107299804688	2	569.376958	1136.73936	1.8329	0.0010436	-0.52531	-0.0002991	1.3076	0.00074454	569.3763637095423	126.18	0.47272	126.18	126.04	126.51	0					12	9	2	0	0	0	0.026056	1	14596	14596		14.865	0	1	39425			44424	34069	36741	36764	47900	47900					0.1764625231901391
PVAKSNRR	8	Unmodified	_PVAKSNRR_					0	0	0			REV__ENST00000541967.1_1_12:49349986-49350821:-|nuORF	REV__ENST00000541967.1_1_12:49349986-49350821:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	464.2802429199219	2	464.277775	926.540997	-1.0006	-0.00046456	3.7033	0.0017193	2.7027	0.0012548	464.27930928166757	65.637	1.5087	62.152	61.84	63.349	-3.4854					67	30	4	0	0	0	0.66704	1	4732	4732		50.025	4.0523	1	579410	+		44425	27379	36742	36765	47901	47901					0.07478831460036872
PVALKYVVDF	10	Unmodified	_PVALKYVVDF_					0	0	0		tr|A0A7D7A257|A0A7D7A257_9CLOT23SrRNA(Uracil(1939)-C(5))-methyltransferaseRlmDOS=ClostridiumintestinaleOX=36845GN=rlmDPE=3SV=1	tr|A0A7D7A257|A0A7D7A257_9CLOT23SrRNA(Uracil(1939)-C(5))-methyltransferaseRlmDOS=ClostridiumintestinaleOX=36845GN=rlmDPE=3SV=1	tr|A0A7D7A257|A0A7D7A257_9CLOT23SrRNA(Uracil(1939)-C(5))-methyltransferaseRlmDOS=ClostridiumintestinaleOX=36845GN=rlmDPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	575.8052978515625	2	575.828975	1149.6434	-1.7264	-0.00099411	2.2308	0.0012846	0.5044	0.00029045	575.8308213243051	68.597	0.39739	65.977	65.77	66.167	-2.6203					10	7	2	0	0	0	0.026635	1	5422	5422		56.721	10.749	1	5367.9			44426	36063	36743	36766	47902	47902					0.07456059688252026
PVAPLHIYH	9	Unmodified	_PVAPLHIYH_					0	0	0			REV__ENST00000591863.1_2_19:33461992-33462229:-|nuORF	REV__ENST00000591863.1_2_19:33461992-33462229:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.8092041015625	2	523.792727	1045.5709	-1.0803	-0.00056583	-1.939	-0.0010156	-3.0193	-0.0015815	523.7915731720086	80.022	0.82983	77.27	76.844	77.673	-2.7514					20	16	2	0	0	0	0.027462	1	6465	6465		39.021	21.553	1	34752	+		44427	27937	36744	36767	47903	47903					0.049937704053718335
PVAPWPHND	9	Unmodified	_PVAPWPHND_					0	0	0		ENST00000391814.5_1_19:51220030-51220207:-|nuORF	ENST00000391814.5_1_19:51220030-51220207:-|nuORF	ENST00000391814.5_1_19:51220030-51220207:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7793579101562	2	516.748516	1031.48248	2.1577	0.001115	0.039627	2.0477E-05	2.1973	0.0011354	516.7489867151116	84.389	0.21095	84.389	84.261	84.472	0					6	4	2	0	0	0	0.027462	1	8816	8816		23.042	0	1	130350			44428	11207	36745	36768	47904	47904					-0.032002699051190575
PVARPIKLV	9	Unmodified	_PVARPIKLV_					0	0	0			REV__ENSG00000102010|ENST00000348343|BMX	REV__ENSG00000102010|ENST00000348343|BMX	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.2724914550781	2	496.834394	991.654236	-1.174	-0.00058328	0.59791	0.00029706	-0.57609	-0.00028622	496.83449279980033	73.18	1.1117	69.784	69.446	70.557	-3.3961					53	22	3	0	0	0	0.027462	1	5697	5697		24.203	5.8783	1	227750	+		44429	17533	36746	36769	47905	47905					0.15807506853218456
PVARPIKLV	9	Unmodified	_PVARPIKLV_					0	0	0			REV__ENSG00000102010|ENST00000348343|BMX	REV__ENSG00000102010|ENST00000348343|BMX	MULTI-MATCH	OvCa9_classI_Rep3	3		2	496.834394	991.654236	0.053991	2.6824E-05	-0.18312	-9.0981E-05	-0.12913	-6.4157E-05	496.83412803740447	72.08	1.679	69.477	69.18	70.859	-2.6023	-0.055279	3.819E-05	NaN	24.203	81	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	329600	+		44430	17533	36746	36769							0.15807506853218456
PVARPRGPH	9	Unmodified	_PVARPRGPH_					0	0	0			REV__ENSG00000171298|ENST00000302262|GAA	REV__ENSG00000171298|ENST00000302262|GAA	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.7239685058594	2	493.785767	985.556982	1.0198	0.00050355	3.683	0.0018186	4.7028	0.0023222	493.7874747104141	131.25	0.80377	131.25	130.82	131.62	0					25	16	2	0	0	0	0.027462	1	15229	15229		26.796	8.4717	1	57321	+		44431	21607	36747	36770	47906	47906					0.06362537696941217
PVASSFVLH	9	Unmodified	_PVASSFVLH_					0	0	0		nc|ENSG00000166348|Q70EL1-7|USP54;ENSG00000166348|ENST00000687698|USP54;nc|ENSG00000166348|Q70EL1-9|USP54;nc|ENSG00000166348|Q70EL1-10|USP54;nc|ENSG00000166348|Q70EL1-8|USP54	nc|ENSG00000166348|Q70EL1-7|USP54	nc|ENSG00000166348|Q70EL1-7|USP54	MULTI-MSMS	OvCa9_classI_Rep2	2	478.7604675292969	2	478.763635	955.512717	-1.3331	-0.00063822	-3.1793	-0.0015222	-4.5124	-0.0021604	478.76197908544503	53.514	1.6905	50.7	50.231	51.922	-2.8139					84	33	4	0	0	0	0.42057	1	3648	3648		50.025	2.3672	1	447130			44432	6668	36748	36771	47907	47907					0.03318088760090632
PVASVLPF	8	Unmodified	_PVASVLPF_					0	0	0			REV__ENST00000523562.5_1_16:67203334-67203685:+|nuORF	REV__ENST00000523562.5_1_16:67203334-67203685:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	415.2436828613281	2	415.244547	828.47454	2.9419	0.0012216	-0.61691	-0.00025617	2.3249	0.00096542	415.2442164281389	120.63	1.0809	120.63	120.3	121.38	0					36	25	2	0	0	0	0.64377	2	13859	13859;13882		54.765	10.234	1	532150	+		44433	27094	36749	36772	47908;47909	47908					0.05344202845435575
PVAVVSPGV	9	Unmodified	_PVAVVSPGV_					0	0	0			REV__CON__P12763	REV__CON__P12763	MULTI-MSMS	OvCa9_classI_Rep2	2	412.7461242675781	2	412.747453	823.480354	0.89602	0.00036983	-3.8761	-0.0015999	-2.9801	-0.00123	412.745727074971	134.3	1.3763	134.07	133.07	134.44	-0.22697					63	27	4	0	0	0	0.6926	1	13323	13323		20.482	1.1219	1	259910	+	+	44434	16193	36750	36773	47910	47910					0.061553013571028714
PVCLQLADI	9	Unmodified	_PVCLQLADI_					0	0	0		TXNL4B|p.D42A|1|0.08|ENSG00000140830|chr16:72090625-72090625|T/G|missense_variant	TXNL4B|p.D42A|1|0.08|ENSG00000140830|chr16:72090625-72090625|T/G|missense_variant	TXNL4B|p.D42A|1|0.08|ENSG00000140830|chr16:72090625-72090625|T/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	486.2648620605469	2	486.265153	970.515753	1.1545	0.00056141	-1.3221	-0.0006429	-0.16757	-8.1486E-05	486.26439439503525	61.985	2.2064	58.916	57.872	60.078	-3.0685					97	53	2	0	0	0	0.50149	1	2197	2197		42.396	1.8235	1	48498			44435	36289	36751	36774	47911	47911					0.029315958225765826
PVDAVQMIV	9	Unmodified	_PVDAVQMIV_					0	0	0			REV__ENST00000482153.1_1_10:135122453-135123793:+|nuORF	REV__ENST00000482153.1_1_10:135122453-135123793:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	486.76580810546875	2	486.265153	970.515753	1.1545	0.00056141	-1.3221	-0.0006429	-0.16757	-8.1486E-05	486.26439439503525	61.985	2.2064	58.916	57.872	60.078	-3.0685					97	53	2	0	0	0	0.67509	1	2304	2304		23.042	0	1	48498	+		44436	23027	36752	36775	47912	47912					0.029315958225879513
PVDEGRDILL	10	Unmodified	_PVDEGRDILL_					0	0	0			REV__PDXDC1-NOB1|1|fusion	REV__PDXDC1-NOB1|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	563.3532104492188	2	563.808771	1125.60299	-0.42997	-0.00024242	3.502	0.0019744	3.072	0.001732	563.8103335406113	115.82	0.44566	115.7	115.49	115.94	-0.11777					12	8	2	0	0	0	0.02663	1	11073	11073		69.628	40.478	1	13270	+		44437	19718	36753	36776	47913	47913					0.0452109329785344
PVDKLKGVSL	10	Unmodified	_PVDKLKGVSL_					0	0	0		ENST00000574916.1_1_17:685618-686569:+|nuORF;ENSG00000171861|ENST00000304478|MRM3	ENST00000574916.1_1_17:685618-686569:+|nuORF	ENST00000574916.1_1_17:685618-686569:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	528.3287963867188	2	528.326599	1054.63865	0.61734	0.00032616	2.9706	0.0015694	3.5879	0.0018956	528.3279822328798	127.76	3.0131	127.54	127.09	130.11	-0.22697					168	60	4	0	0	0	0.60504	1	12521	12521		41.427	0.85399	1	313700			44438	7241	36754	36777	47914	47914					0.11351175545519254
PVDWPPLVL	9	Unmodified	_PVDWPPLVL_					0	0	0		RTN4-KIAA0196|2|fusion;RTN4-KIAA0196|1|fusion;ENST00000519042.2_1_8:126036861-126044688:-|nuORF;ENSG00000164961|ENST00000318410|WASHC5	RTN4-KIAA0196|2|fusion;ENSG00000164961|ENST00000318410|WASHC5	RTN4-KIAA0196|2|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.295654296875	2	518.29731	1034.58007	-0.7282	-0.00037742	-4.0478	-0.002098	-4.776	-0.0024754	518.2952267332782	93.923	2.6605	91.416	91.171	93.831	-2.5072					159	53	5	0	0	0	0.25214	1	8222	8222		68.485	12.051	1	7836100			44439	32793;6506	36755	36778	47915	47915					0.06416118971037577
PVDYYATAL	9	Unmodified	_PVDYYATAL_					0	0	0		ENSG00000139874|ENST00000267377|SSTR1	ENSG00000139874|ENST00000267377|SSTR1	ENSG00000139874|ENST00000267377|SSTR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.8115234375	2	506.752933	1011.49131	-0.037893	-1.9203E-05	-3.7503	-0.0019005	-3.7881	-0.0019197	506.7509868351482	89.349	1.1392	86.746	86.483	87.622	-2.6027					58	22	4	0	0	0	0.027417	1	7728	7728		65.803	0	1	352350			44440	4808	36756	36779	47916	47916					-0.013973410593052904
PVEFLLPK	8	Unmodified	_PVEFLLPK_					0	0	0			REV__TANC1|p.T1589Ifs*85|1|0.16|ENSG00000115183|chr2:159230192-159230192|C/-|frameshift_variant;REV__nc|ENSG00000170921|Q9HCD6-3|TANC2	REV__TANC1|p.T1589Ifs*85|1|0.16|ENSG00000115183|chr2:159230192-159230192|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.7254943847656	2	471.786579	941.558604	0.0021127	9.9676E-07	-1.9629	-0.00092605	-1.9607	-0.00092505	471.78561186882973	43.172	0.55376	43.172	42.839	43.393	0					16	12	2	0	0	0	0.028476	1	2843	2843		38.806	9.6566	1	330050	+		44441	18224;21577	36757	36780	47917	47917					0.08548733942336639
PVEHRKKGR	9	Unmodified	_PVEHRKKGR_					0	0	0			REV__nc|ENSG00000105357|Q7Z406-4|MYH14	REV__nc|ENSG00000105357|Q7Z406-4|MYH14	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8302001953125	2	553.830706	1105.64686	-0.8401	-0.00046527	-0.49633	-0.00027488	-1.3364	-0.00074015	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.69895	1	14122	14122		18.324	1.607	1	245610	+		44442	17714	36758	36781	47918	47918					0.09826167305527633
PVEIGPLLVV	10	Unmodified	_PVEIGPLLVV_					0	0	0			REV__ENSG00000132763|ENST00000401061|MMACHC	REV__ENSG00000132763|ENST00000401061|MMACHC	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.2946166992188	2	518.326068	1034.63758	0.67526	0.00035	-1.3123	-0.00068019	-0.63702	-0.00033019	518.3255198639897	92.521	0.31592	91.353	91.182	91.498	-1.168					8	5	2	0	0	0	0.026871	1	8229	8229		37.159	17.799	1	10242	+		44443	19104	36759	36782	47919	47919					0.12164961176608813
PVEKIKAEL	9	Unmodified	_PVEKIKAEL_					0	0	0			REV__MYH4|p.T927P|1|0.86|ENSG00000264424|chr17:10453798-10453798|T/G|missense_variant	REV__MYH4|p.T927P|1|0.86|ENSG00000264424|chr17:10453798-10453798|T/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	513.8154296875	2	513.813325	1025.6121	-0.4504	-0.00023142	3.9685	0.002039	3.5181	0.0018076	513.8152848157494	74.741	2.4404	72.77	72.324	74.764	-1.9711					110	46	3	0	0	0	0.38529	3	6130	6130;6160;6166		53.351	0	1	2623500	+		44444	28689	36760	36783	47920;47921;47922	47920					0.10031486654179389
PVEKIKAEL	9	Unmodified	_PVEKIKAEL_					0	0	0			REV__MYH4|p.T927P|1|0.86|ENSG00000264424|chr17:10453798-10453798|T/G|missense_variant	REV__MYH4|p.T927P|1|0.86|ENSG00000264424|chr17:10453798-10453798|T/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	513.8161010742188	2	513.813325	1025.6121	-0.17927	-9.2113E-05	3.3719	0.0017325	3.1926	0.0016404	513.8151245610528	74.922	2.6818	72.512	71.994	74.676	-2.4106					138	52	4	0	0	0	0.21395	4	3750	3750;3762;3786;3804		73.975	10.668	1	3292300	+		44445	28689	36760	36783	47923;47924;47925;47926	47923					0.10031486654179389
PVEKIKAEL	9	Unmodified	_PVEKIKAEL_					0	0	0			REV__MYH4|p.T927P|1|0.86|ENSG00000264424|chr17:10453798-10453798|T/G|missense_variant	REV__MYH4|p.T927P|1|0.86|ENSG00000264424|chr17:10453798-10453798|T/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.8165283203125	2	513.813325	1025.6121	-0.22749	-0.00011689	3.8065	0.0019558	3.579	0.0018389	513.8151298922651	75.964	2.6418	73.025	72.401	75.043	-2.9389					148	54	4	0	0	0	0.22961	1	6059	6059		71.296	7.0884	1	2672000	+		44446	28689	36760	36783	47927	47927					0.10031486654179389
PVEKNSFNK	9	Unmodified	_PVEKNSFNK_					0	0	0		tr|A0A553SRX6|A0A553SRX6_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_02035PE=4SV=1	tr|A0A553SRX6|A0A553SRX6_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_02035PE=4SV=1	tr|A0A553SRX6|A0A553SRX6_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_02035PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.7842407226562	2	531.782556	1061.55056	-0.8739	-0.00046473	-0.0088073	-4.6836E-06	-0.88271	-0.00046941	531.7824678459274	47.97	2.462	44.862	44.287	46.749	-3.1077					144	47	5	0	0	0	0.24951	1	2660	2660		68.787	7.8149	1	3227400			44447	34309	36761	36784	47928	47928					0.022245549549097632
PVEKRLII	8	Unmodified	_PVEKRLII_					0	0	0		tr|A0A553SIT4|A0A553SIT4_NIACICDP-glycerolglycerophosphotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15500PE=3SV=1	tr|A0A553SIT4|A0A553SIT4_NIACICDP-glycerolglycerophosphotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15500PE=3SV=1	tr|A0A553SIT4|A0A553SIT4_NIACICDP-glycerolglycerophosphotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15500PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.31787109375	2	484.318577	966.622602	0.062107	3.008E-05	-0.5238	-0.00025369	-0.4617	-0.00022361	484.31822110517277	116.03	1.267	114.67	114.4	115.67	-1.3645					57	24	4	0	0	0	0.745	1	10810	10810		29.15	1.2673	1	196150			44448	33421	36762	36785	47929	47929					0.13795514099274442
PVEKVDII	8	Unmodified	_PVEKVDII_					0	0	0		nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000525616.1_1_19:50180537-50188241:+|nuORF;nc|ENSG00000111218|Q9NR22-2|PRMT8;ENSG00000111218|ENST00000382622|PRMT8	nc|ENSG00000126457|Q99873-2|PRMT1	nc|ENSG00000126457|Q99873-2|PRMT1	MULTI-MSMS	OvCa9_classI_Rep3	3	456.7721862792969	2	456.773668	911.532783	-2.6183	-0.001196	-0.38222	-0.00017459	-3.0005	-0.0013706	456.77340273142477	142.71	1.7302	141.7	141.28	143.01	-1.0106					71	34	3	0	0	0	0.71369	1	11855	11855		40.573	0	1	453300			44449	3781	36763	36786	47930	47930					0.07347839700048553
PVELGKAK	8	Unmodified	_PVELGKAK_					0	0	0			REV__ENSG00000044446|ENST00000379942|PHKA2	REV__ENSG00000044446|ENST00000379942|PHKA2	MULTI-MSMS	OvCa9_classI_Rep2	2	421.2593078613281	2	421.260728	840.506903	0.30073	0.00012669	-3.3692	-0.0014193	-3.0685	-0.0012926	421.25922240366054	134.3	0.7355	134.07	133.56	134.29	-0.22696					27	14	2	0	0	0	0.74361	1	13291	13291		29.842	3.0454	1	153990	+		44450	16648	36764	36787	47931	47931					0.08026990248424681
PVELGKAK	8	Unmodified	_PVELGKAK_					0	0	0			REV__ENSG00000044446|ENST00000379942|PHKA2	REV__ENSG00000044446|ENST00000379942|PHKA2	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	421.260728	840.506903	2.2929	0.00096591	-5.325	-0.0022432	-3.0321	-0.0012773	421.25839974561757	135.72	2.3548	134.18	133.26	135.62	-1.5437	-0.00041165	-0.00093542	NaN	29.842	105	47	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	621460	+		44451	16648	36764	36787							0.08026990248424681
PVEPVLEKEK	10	Unmodified	_PVEPVLEKEK_					0	0	0			REV__ENSG00000166963|ENST00000300231|MAP1A	REV__ENSG00000166963|ENST00000300231|MAP1A	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3328247070312	2	584.334621	1166.65469	0.094192	5.504E-05	-2.7862	-0.0016281	-2.692	-0.001573	584.3328611652822	34.058	1.538	31.269	30.209	31.747	-2.7881					53	30	3	0	0	0	0.65849	1	970	970		35.152	3.6222	1	68432	+		44452	21242	36765	36788	47932	47932					0.0780283699177744
PVFFDKSTL	9	Unmodified	_PVFFDKSTL_					0	0	0		tr|A0A553SRJ3|A0A553SRJ3_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_01210PE=4SV=1	tr|A0A553SRJ3|A0A553SRJ3_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_01210PE=4SV=1	tr|A0A553SRJ3|A0A553SRJ3_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_01210PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.3193359375	2	527.2844	1052.55425	-1.5146	-0.00079863	-0.080457	-4.2424E-05	-1.5951	-0.00084106	527.2839916304749	100.99	1.0091	98.723	98.446	99.455	-2.2665					31	20	3	0	0	0	0.027462	1	9136	9136		18.324	0	1	91295			44453	34269	36766	36789	47933	47933					0.030072247287762366
PVFGKGVAYDV	11	Unmodified	_PVFGKGVAYDV_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1;ENST00000419457.1_1_13:29297642-29297861:-|nuORF	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.8529052734375	2	576.308406	1150.60226	2.0971	0.0012085	3.5215	0.0020295	5.6186	0.003238	576.3109108236343	84.282	0.33667	84.282	84.051	84.388	0					12	7	2	0	0	0	0.025681	1	8807	8807		26.693	13.239	1	164450			44454	807	36767	36790	47934	47934					0.03298298648792297
PVFGKGVAYDV	11	Unmodified	_PVFGKGVAYDV_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1;ENST00000419457.1_1_13:29297642-29297861:-|nuORF	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	576.308406	1150.60226	-1.8077	-0.0010418	-1.8681	-0.0010766	-3.6757	-0.0021183	576.3073340389377	86.121	0.601	83.9	83.686	84.287	-2.2204	-0.19082	-0.0019461	NaN	32.812	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30754			44455	807	36767	36790							0.03298298648792297
PVFLAVILS	9	Unmodified	_PVFLAVILS_					0	0	0		tr|A0A553SQ00|A0A553SQ00_NIACIXylosetransportsystempermeaseproteinXylHOS=NialliacirculansOX=1397GN=CEQ21_14865PE=4SV=1	tr|A0A553SQ00|A0A553SQ00_NIACIXylosetransportsystempermeaseproteinXylHOS=NialliacirculansOX=1397GN=CEQ21_14865PE=4SV=1	tr|A0A553SQ00|A0A553SQ00_NIACIXylosetransportsystempermeaseproteinXylHOS=NialliacirculansOX=1397GN=CEQ21_14865PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	480.76690673828125	2	479.802229	957.589904	-1.3395	-0.00064271	-3.1494	-0.0015111	-4.4889	-0.0021538	479.8004891384182	53.777	0.99461	50.963	50.578	51.573	-2.8139					31	19	2	0	0	0	0.027462	1	3701	3701		42.474	10.945	1	46811			44456	34099	36768	36791	47935	47935					0.10941306976428677
PVFLPVFSH	9	Unmodified	_PVFLPVFSH_					0	0	0		ENST00000477448.1_1_6:107811820-107879187:+|nuORF	ENST00000477448.1_1_6:107811820-107879187:+|nuORF	ENST00000477448.1_1_6:107811820-107879187:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.33154296875	2	521.789653	1041.56475	0.34159	0.00017824	-3.9424	-0.0020571	-3.6008	-0.0018789	521.7878343124346	158.22	0.41113	158.22	158.01	158.42	0					13	8	2	0	0	0	0.027462	1	18563	18563		18.324	1.8513	1	28344			44457	12478	36769	36792	47936	47936					0.04563252173852561
PVFLPWVAP	9	Unmodified	_PVFLPWVAP_					0	0	0		ENST00000594859.5_1_19:18723732-18728463:+|nuORF	ENST00000594859.5_1_19:18723732-18728463:+|nuORF	ENST00000594859.5_1_19:18723732-18728463:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.7937622070312	2	513.294571	1024.57459	-0.35222	-0.00018079	1.1964	0.00061413	0.84422	0.00043333	513.2951604157124	90.824	0.86813	88.249	88.161	89.029	-2.575					30	16	2	0	0	0	0.027462	1	7839	7839		29.842	0	1	165390			44458	14170	36770	36793	47937	47937					0.06328440179208883
PVFPLARNK	9	Unmodified	_PVFPLARNK_					0	0	0			REV__nc|ENSG00000077235|Q12789-3|GTF3C1	REV__nc|ENSG00000077235|Q12789-3|GTF3C1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.83154296875	2	521.313826	1040.6131	0.40492	0.00021109	2.462	0.0012834	2.8669	0.0014945	521.3150333904989	33.976	1.1907	31.188	30.756	31.947	-2.7881					35	23	2	0	0	0	0.027462	1	1046	1046		35.201	8.4046	1	20901	+		44459	17006	36771	36794	47938	47938					0.09441745813751368
PVFTAPAE	8	Unmodified	_PVFTAPAE_					0	0	0		nc|ENSG00000141750|Q6ZMT1-2|STAC2;ENSG00000141750|ENST00000333461|STAC2	nc|ENSG00000141750|Q6ZMT1-2|STAC2	nc|ENSG00000141750|Q6ZMT1-2|STAC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.69464111328125	2	416.215986	830.417419	-0.022606	-9.409E-06	-2.5719	-0.0010705	-2.5945	-0.0010799	416.2146354882285	49.44	0.65094	49.44	49.206	49.856	0					22	14	3	0	0	0	0.028476	1	3703	3703		35.201	6.0512	1	213310			44460	4939	36772	36795	47939	47939					-0.004572644309519092
PVFVHAGP	8	Unmodified	_PVFVHAGP_					0	0	0		MTHFD1-CASK|1|fusion;MTHFD1-CASK|3|fusion;MTHFD1-CASK|2|fusion;ENSG00000100714|ENST00000652337|MTHFD1;MTHFD1|p.P917Afs*5|1|0.07|ENSG00000100714|chr14:64458242-64458243|-/T|frameshift_variant;ENST00000556771.5_1_14:64906939-64911458:+|nuORF;ENST00000413059.1_1_X:57419910-57420861:-|nuORF;MTHFD1L|p.L914Gfs*14|1|0.81|ENSG00000120254|chr6:151037009-151037042|TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA/-|frameshift_variant;ENSG00000120254|ENST00000367321|MTHFD1L	MTHFD1-CASK|1|fusion;MTHFD1L|p.L914Gfs*14|1|0.81|ENSG00000120254|chr6:151037009-151037042|TCTATCTCACCAACCTGACAAAAAAGGTGTGCCA/-|frameshift_variant	MTHFD1-CASK|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	412.22760009765625	2	412.226688	822.438824	2.2605	0.00093185	0.32906	0.00013565	2.5896	0.0010675	412.22669256697355	130.91	1.0458	130.91	130.53	131.58	0					48	21	3	0	0	0	0.7363	1	15183	15183		33.493	0	1	473200			44461	14842;3422	36773	36796	47940	47940					0.020501653884252846
PVFVPAENV	9	Unmodified	_PVFVPAENV_					0	0	0			REV__nc|ENSG00000062038|P22223-2|CDH3	REV__nc|ENSG00000062038|P22223-2|CDH3	MULTI-MSMS	OvCa9_classI_Rep3	3	486.262939453125	2	486.263468	970.512382	1.1545	0.00056141	2.1439	0.0010425	3.2985	0.0016039	486.26439439503525	61.985	2.2064	58.916	57.872	60.078	-3.0685					97	53	2	0	0	0	0.53957	1	2187	2187		38.806	5.2906	1	48498	+		44462	16749	36774	36797	47941	47941					0.025946690402406603
PVFYRLGL	8	Unmodified	_PVFYRLGL_					0	0	0		SLC5A5|p.Q224Pfs*10|1|0.07|ENSG00000105641|chr19:17876077-17876081|CCAGA/-|frameshift_variant;ENSG00000105641|ENST00000222248|SLC5A5	SLC5A5|p.Q224Pfs*10|1|0.07|ENSG00000105641|chr19:17876077-17876081|CCAGA/-|frameshift_variant	SLC5A5|p.Q224Pfs*10|1|0.07|ENSG00000105641|chr19:17876077-17876081|CCAGA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	482.78448486328125	2	482.78437	963.554188	1.1629	0.00056142	-1.4927	-0.00072066	-0.32985	-0.00015925	482.7834710585416	120.81	2.5422	119.78	119.46	122	-1.0271					114	48	4	0	0	0	0.74361	1	9221	9221		29.842	0	1	731330			44463	2478	36775	36798	47942	47942					0.07095269519413705
PVGAGGPAKSL	11	Unmodified	_PVGAGGPAKSL_					0	0	0			REV__ENST00000371222.3_1_1:59248771-59248882:-|nuORF	REV__ENST00000371222.3_1_1:59248771-59248882:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	477.2735595703125	2	477.274367	952.53418	-0.36419	-0.00017382	0.23031	0.00010992	-0.13387	-6.3894E-05	477.2743448810079	78.003	2.2056	76.214	75.571	77.776	-1.7894					80	42	3	0	0	0	0.26821	3	6504	6493;6504;6509		70.816	17.88	1	403730	+		44464	24978	36776	36799	47943;47944;47945	47944					0.056014737887949195
PVGAGGPAKSL	11	Unmodified	_PVGAGGPAKSL_					0	0	0			REV__ENST00000371222.3_1_1:59248771-59248882:-|nuORF	REV__ENST00000371222.3_1_1:59248771-59248882:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	477.2745666503906	2	477.274367	952.53418	0.19092	9.1124E-05	-0.47583	-0.0002271	-0.28491	-0.00013598	477.2740802004449	78.148	1.9944	75.796	75.353	77.348	-2.3527					70	39	3	0	0	0	0.34051	1	4149	4149		65.465	3.358	1	1022000	+		44465	24978	36776	36799	47946	47946					0.056014737887949195
PVGARVVRAL	10	Unmodified	_PVGARVVRAL_					0	0	0		ENST00000247003.8_1_19:19039081-19039306:+|nuORF	ENST00000247003.8_1_19:19039081-19039306:+|nuORF	ENST00000247003.8_1_19:19039081-19039306:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	519.3327026367188	2	519.33255	1036.65055	0.43803	0.00022748	-1.2797	-0.0006646	-0.84169	-0.00043712	519.3319823191914	72.351	2.5617	69.844	69.226	71.788	-2.5071					171	48	5	0	0	0	0.64063	1	5849	5849		37.159	0	1	1130700			44466	9779	36777	36800	47947	47947					0.13368837079360674
PVGCHLLLDE	10	Unmodified	_PVGCHLLLDE_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3	REV__nc|ENSG00000198838|Q15413-2|RYR3	MULTI-SECPEP	OvCa9_classI_Rep2	2	547.7967529296875	2	548.278792	1094.54303	0.072384	3.9687E-05	-2.3942	-0.0013127	-2.3218	-0.001273	548.2785258059569	106.46	0.24854	106.15	106.08	106.32	-0.30836					5	4	2	0	0	0	0.026582	1	9912	9912		38.806	0	1	5868.5	+		44467	23074	36778	36801	47948	47948					-0.00045920637057861313
PVGDTLFNHLC	11	Unmodified	_PVGDTLFNHLC_					0	0	0			REV__ENSG00000104518|ENST00000262580|GSDMD	REV__ENSG00000104518|ENST00000262580|GSDMD	MULTI-MSMS	OvCa9_classI_Rep3	3	405.8677673339844	3	405.865741	1214.57539	2.7675	0.0011232	-0.047047	-1.9095E-05	2.7204	0.0011041	405.8656325820477	60.873	0.3373	57.804	57.703	58.041	-3.0685					10	8	2	0	0	0	0.70148	1	2087	2087		19.263	0	1	14486	+		44468	17667	36779	36802	47949	47949					-0.023311332340199442
PVGFSLSGMSK	11	Unmodified	_PVGFSLSGMSK_					0	0	0		tr|A0A7D7A1Y8|A0A7D7A1Y8_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_17470PE=4SV=1	tr|A0A7D7A1Y8|A0A7D7A1Y8_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_17470PE=4SV=1	tr|A0A7D7A1Y8|A0A7D7A1Y8_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_17470PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	554.76953125	2	555.286617	1108.55868	-0.16607	-9.2218E-05	-3.0057	-0.001669	-3.1717	-0.0017612	555.2846889095108	107.42	1.1937	106.16	105.9	107.1	-1.267					37	22	2	0	0	0	0.025656	1	7598	7598		32.751	6.6872	1	41107			44469	36053	36780	36803	47950	47950					0.00874365880008554
PVGFSLSGMSK	11	Unmodified	_PVGFSLSGMSK_					0	0	0		tr|A0A7D7A1Y8|A0A7D7A1Y8_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_17470PE=4SV=1	tr|A0A7D7A1Y8|A0A7D7A1Y8_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_17470PE=4SV=1	tr|A0A7D7A1Y8|A0A7D7A1Y8_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_17470PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	555.286617	1108.55868	0.57671	0.00032024	-3.1147	-0.0017295	-2.5379	-0.0014093	555.2846838474983	106.54	1.3351	106.23	105.93	107.26	-0.30836	0.10102	-0.00031811	NaN	26.063	40	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35633			44470	36053	36780	36803							0.00874365880008554
PVGIKIKLVS	10	Unmodified	_PVGIKIKLVS_					0	0	0			REV__ENST00000579991.2_1_17:56167732-56167909:+|nuORF	REV__ENST00000579991.2_1_17:56167732-56167909:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.35546875	2	527.35516	1052.69577	2.005	0.0010573	-1.8912	-0.00099732	0.11383	6.0028E-05	527.3539674551008	135.6	1.3745	134.05	133.71	135.08	-1.5437					52	27	3	0	0	0	0.78463	1	13142	13142		20.947	0	1	89870	+		44471	27817	36781	36804	47951	47951					0.17152642821884
PVGKRHTG	8	Unmodified	_PVGKRHTG_					0	0	0		nc|ENSG00000107736|Q9H251-6|CDH23;CDH23|p.L2204Vfs*16|1|0.07|ENSG00000107736|chr10:71793387-71793388|-/GTATTTAAGG|frameshift_variant;nc|ENSG00000107736|Q9H251-4|CDH23;nc|ENSG00000107736|Q9H251-2|CDH23;nc|ENSG00000107736|Q9H251-3|CDH23;ENSG00000107736|ENST00000224721|CDH23;nc|ENSG00000107736|Q9H251-8|CDH23	nc|ENSG00000107736|Q9H251-6|CDH23	nc|ENSG00000107736|Q9H251-6|CDH23	MULTI-MSMS	OvCa9_classI_Rep3	3	426.2452697753906	2	426.245944	850.477334	-1.1759	-0.00050123	1.2849	0.00054769	0.10901	4.6463E-05	426.2464135300909	139.12	1.5749	138.06	137.54	139.11	-1.0595					80	31	4	0	0	0	0.74679	1	11431	11431		28.254	4.0515	1	422340			44472	212	36782	36805	47952	47952					0.0461147102294035
PVGLCFSVL	9	Carbamidomethyl (C)	_PVGLC(Carbamidomethyl (C))FSVL_	PVGLC(1)FSVL		PVGLC(60)FSVL		0	1	0		ENST00000498712.5_1_8:67383796-67386098:+|nuORF	ENST00000498712.5_1_8:67383796-67386098:+|nuORF	ENST00000498712.5_1_8:67383796-67386098:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.2669982910156	2	496.267696	990.520839	0.096741	4.801E-05	-4.3534	-0.0021605	-4.2567	-0.0021125	496.26531883907927	56.638	1.8272	53.343	52.718	54.545	-3.2944					107	35	5	0	0	0	0.32337	1	3632	3632		60.294	10.852	1	946680			44473	12832	36783	36806	47953	47953	150				0.025198996852054734
PVGLKVGDVVV	11	Unmodified	_PVGLKVGDVVV_					0	0	0		tr|A0A7D6VS28|A0A7D6VS28_9CLOTLargeribosomalsubunitproteinuL2OS=ClostridiumintestinaleOX=36845GN=rplBPE=3SV=1	tr|A0A7D6VS28|A0A7D6VS28_9CLOTLargeribosomalsubunitproteinuL2OS=ClostridiumintestinaleOX=36845GN=rplBPE=3SV=1	tr|A0A7D6VS28|A0A7D6VS28_9CLOTLargeribosomalsubunitproteinuL2OS=ClostridiumintestinaleOX=36845GN=rplBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.7679443359375	2	541.334424	1080.6543	-1.624	-0.00087913	-0.66546	-0.00036024	-2.2895	-0.0012394	541.3339360184237	42.169	1.184	39.189	38.853	40.037	-2.9804					43	22	3	0	0	0	0.025853	1	1904	1904		20.947	0	1	168320			44474	34980	36784	36807	47954	47954					0.11719462062569619
PVGSLPRSAGL	11	Unmodified	_PVGSLPRSAGL_					0	0	0			REV__ENST00000476870.5_1_7:100465042-100470283:+|nuORF	REV__ENST00000476870.5_1_7:100465042-100470283:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	527.305908203125	2	527.306198	1052.59784	-0.57511	-0.00030326	0.4213	0.00022215	-0.15381	-8.1105E-05	527.3061602728084	45.891	1.1468	43.181	42.797	43.943	-2.7097					58	22	4	0	0	0	0.38665	1	2705	2705		62.107	17.73	1	225920	+		44475	26374	36785	36808	47955	47955					0.07364834225904815
PVGVARGR	8	Unmodified	_PVGVARGR_					0	0	0			REV__ENST00000306467.9_1_5:122754157-122758966:-|nuORF	REV__ENST00000306467.9_1_5:122754157-122758966:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	406.2483215332031	2	406.248486	810.48242	0.12737	5.1745E-05	0.179	7.2718E-05	0.30637	0.00012446	406.2484453732125	140.19	2.0181	139.96	139.4	141.42	-0.22697					109	40	4	0	0	0	0.74971	1	14049	14049		26.796	5.0938	1	304300	+		44476	24295	36786	36809	47956	47956					0.06959774885558545
PVGVGIAGALF	11	Unmodified	_PVGVGIAGALF_					0	0	0		ENSG00000139971|ENST00000267485|ARMH4;nc|ENSG00000139971|Q86TY3-3|ARMH4	ENSG00000139971|ENST00000267485|ARMH4	ENSG00000139971|ENST00000267485|ARMH4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.825927734375	2	500.794935	999.575317	-0.61169	-0.00030633	-3.8974	-0.0019518	-4.5091	-0.0022581	500.7923829841151	62.358	0.87878	58.901	58.715	59.594	-3.4577					32	17	3	0	0	0	0.025361	1	4346	4346		40.573	19.626	1	118040			44477	4814	36787	36810	47957	47957					0.07551234828281395
PVGVLRILL	9	Unmodified	_PVGVLRILL_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-MSMS	OvCa9_classI_Rep2	2	490.3362121582031	2	490.33677	978.658987	0.31976	0.00015679	-1.1553	-0.00056648	-0.83553	-0.00040969	490.3362879264998	135.18	3.9777	134.96	134.64	138.62	-0.22697					225	81	5	0	0	0	0.70177	1	13685	13685		17.365	0	1	7114000			44478	15150	36788	36811	47958	47958					0.16880390995981998
PVGVRSLAFV	10	Unmodified	_PVGVRSLAFV_					0	0	0			REV__ENST00000313349.3_1_2:64862875-64863040:-|nuORF	REV__ENST00000313349.3_1_2:64862875-64863040:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.8121337890625	2	522.813659	1043.61277	-4.1208	-0.0021544	0.024018	1.2557E-05	-4.0968	-0.0021419	522.8135945226888	152.85	1.1432	151.42	151.08	152.23	-1.435					63	27	4	0	0	0	0.72319	1	15118	15118		27.882	0	1	215640	+		44479	24368	36789	36812	47959	47959					0.09270326093883341
PVHLCKPMV	9	Unmodified	_PVHLCKPMV_					0	0	0			REV__ENST00000330333.10_1_21:42647791-42647854:+|nuORF	REV__ENST00000330333.10_1_21:42647791-42647854:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.8135986328125	2	512.277541	1022.54053	-0.156	-7.9914E-05	-3.2042	-0.0016414	-3.3602	-0.0017214	512.2748764448054	83.624	1.0237	80.961	80.29	81.314	-2.6629					36	20	3	0	0	0	0.027462	1	6910	6910		26.796	11.931	1	58041	+		44480	24526	36790	36813	47960	47960					0.030159524243231317
PVHLCKPMV	9	Unmodified	_PVHLCKPMV_					0	0	0			REV__ENST00000330333.10_1_21:42647791-42647854:+|nuORF	REV__ENST00000330333.10_1_21:42647791-42647854:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	512.277541	1022.54053	-0.85417	-0.00043757	1.4118	0.00072326	0.55767	0.00028568	512.2782471125797	83.066	0.68769	80.77	80.579	81.267	-2.2963	-0.095801	0.00063682	NaN	26.796	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54648	+		44481	24526	36790	36813							0.030159524243231317
PVHRSRGVK	9	Unmodified	_PVHRSRGVK_					0	0	0			REV__ENST00000289431.9_1_20:48520827-48521001:-|nuORF	REV__ENST00000289431.9_1_20:48520827-48521001:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.2957763671875	2	518.312149	1034.60975	-0.84171	-0.00043627	-3.6778	-0.0019062	-4.5195	-0.0023425	518.3105142578959	93.348	0.44829	91.386	91.128	91.577	-1.9617					10	8	2	0	0	0	0.027462	1	5962	5962		30.504	5.0535	1	34687	+		44482	24149	36791	36814	47961	47961					0.09382495759746234
PVHTFLEL	8	Unmodified	_PVHTFLEL_					0	0	0			REV__nc|ENSG00000132879|Q9H4M3-2|FBXO44	REV__nc|ENSG00000132879|Q9H4M3-2|FBXO44	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.820556640625	2	478.26601	954.517468	0.14508	6.9385E-05	-3.2604	-0.0015594	-3.1154	-0.00149	478.2636349832027	80.242	1.0923	78.547	78.025	79.118	-1.6951					40	21	3	0	0	0	0.028476	1	6835	6835		20.482	0	1	46528	+		44483	28853	36792	36815	47962	47962					0.038389729028381225
PVIFRGPIVP	10	Unmodified	_PVIFRGPIVP_					0	0	0			REV__ENST00000494373.1_1_2:54014190-54014463:+|nuORF	REV__ENST00000494373.1_1_2:54014190-54014463:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	547.3394775390625	2	547.839677	1093.6648	0.65277	0.00035761	3.8336	0.0021002	4.4864	0.0024578	547.8416503303802	71.419	3.1748	68.911	67.929	71.104	-2.5071					123	60	3	0	0	0	0.39971	2	5730	5725;5730		68.485	17.149	1	1272400	+		44484	26726	36793	36816	47963;47964	47964					0.12171489507659317
PVIGVIVPG	9	Unmodified	_PVIGVIVPG_					0	0	0		tr|A0A553SK33|A0A553SK33_NIACIGlutamateracemaseOS=NialliacirculansOX=1397GN=racEPE=3SV=1	tr|A0A553SK33|A0A553SK33_NIACIGlutamateracemaseOS=NialliacirculansOX=1397GN=racEPE=3SV=1	tr|A0A553SK33|A0A553SK33_NIACIGlutamateracemaseOS=NialliacirculansOX=1397GN=racEPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	425.775146484375	2	425.773471	849.53239	-0.95445	-0.00040638	4.1695	0.0017752	3.215	0.0013689	425.7751660668595	68.762	2.1455	66.142	65.721	67.866	-2.6203					132	42	5	0	0	0	0.68641	1	5412	5412		21.702	6.0661	1	3515300			44485	33572	36794	36817	47965	47965					0.10160464770854105
PVIKAVTT	8	Unmodified	_PVIKAVTT_					0	0	0			REV__tr|A0A7D7AC35|A0A7D7AC35_9CLOTDeoR/GlpRtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_17610PE=4SV=1	REV__tr|A0A7D7AC35|A0A7D7AC35_9CLOTDeoR/GlpRtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_17610PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	414.76177978515625	2	414.763104	827.511654	-0.47497	-0.000197	-2.6059	-0.0010808	-3.0808	-0.0012778	414.761930419043	140.08	2.1671	139.86	139.4	141.57	-0.22696					123	43	4	0	0	0	0.75915	1	13972	13972		20.482	0	1	474850	+		44486	32683	36795	36818	47966	47966					0.09099874391165486
PVIRPGGTLGL	11	Unmodified	_PVIRPGGTLGL_					0	0	0		ENSG00000149115|ENST00000358252|TNKS1BP1;ENST00000427750.2_1_11:57068016-57070427:-|nuORF	ENSG00000149115|ENST00000358252|TNKS1BP1	ENSG00000149115|ENST00000358252|TNKS1BP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3308715820312	2	540.332216	1078.64988	-0.23133	-0.000125	-0.069671	-3.7645E-05	-0.301	-0.00016264	540.3320015899856	111.49	0.84241	109.97	109.63	110.47	-1.5111					42	15	4	0	0	0	0.60323	1	10274	10274		44.377	1.981	1	279660			44487	5442	36796	36819	47967	47967					0.11369997639667417
PVITSQPVI	9	Unmodified	_PVITSQPVI_					0	0	0			REV__tr|A0A553SM52|A0A553SM52_NIACILactateutilizationproteinCOS=NialliacirculansOX=1397GN=lutCPE=3SV=1	REV__tr|A0A553SM52|A0A553SM52_NIACILactateutilizationproteinCOS=NialliacirculansOX=1397GN=lutCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.2879333496094	2	477.286943	952.559333	0.5643	0.00026933	-0.77263	-0.00036877	-0.20834	-9.9436E-05	477.286425541348	89.351	1.3908	86.748	86.434	87.825	-2.6027					41	27	2	0	0	0	0.33652	1	7665	7665		58.782	7.4465	1	326370	+		44488	30297	36797	36820	47968	47968					0.08115528591372367
PVIVMITK	8	Unmodified	_PVIVMITK_					0	0	0		ENST00000548220.1_1_12:71054984-71148538:-|nuORF;ENST00000549107.5_1_12:71032966-71078579:-|nuORF;nc|ENSG00000153233|Q15256-3|PTPRR;nc|ENSG00000153233|Q15256-4|PTPRR;nc|ENSG00000153233|Q15256-5|PTPRR;ENSG00000153233|ENST00000283228|PTPRR	ENST00000548220.1_1_12:71054984-71148538:-|nuORF	ENST00000548220.1_1_12:71054984-71148538:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	450.7840576171875	2	450.782982	899.55141	4.7325	0.0021333	-0.52966	-0.00023876	4.2029	0.0018946	450.78259742847797	27.516	0.58479	24.806	24.66	25.245	-2.7097					22	13	2	0	0	0	0.75426	1	478	478		18.324	2.6882	1	50831			44489	13558	36798	36821	47969	47969					0.09761678070242397
PVIWRGPVI	9	Unmodified	_PVIWRGPVI_					0	0	0		tr|A0A7D6VPA6|A0A7D6VPA6_9CLOTIron-sulfurclustercarrierproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21945PE=3SV=1	tr|A0A7D6VPA6|A0A7D6VPA6_9CLOTIron-sulfurclustercarrierproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21945PE=3SV=1	tr|A0A7D6VPA6|A0A7D6VPA6_9CLOTIron-sulfurclustercarrierproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21945PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.29541015625	2	518.818744	1035.62294	-0.83587	-0.00043367	-2.2191	-0.0011513	-3.055	-0.001585	518.817541246972	93.452	0.30029	91.49	91.378	91.678	-1.9617					10	5	2	0	0	0	0.027462	1	5986	5986		50.025	14.824	1	11746			44490	34759	36799	36822	47970	47970					0.10654933819137113
PVKCKWLK	8	Unmodified	_PVKCKWLK_					0	0	0		ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	ENSG00000166233|ENST00000379887|ARIH1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.7854309082031	2	501.301873	1000.58919	-0.22406	-0.00011232	-4.1897	-0.0021003	-4.4138	-0.0022126	501.8002488750957	68.742	0.19952	65.252	65.113	65.312	-3.4902					5	3	2	0	0	0	0.028476	1	5110	5110		19.36	0	1	18091			44491	6657	36800	36823	47971	47971					0.08892189055711697
PVKEPLRL	8	Unmodified	_PVKEPLRL_					0	0	0			REV__nc|ENSG00000154133|Q8WZ75-2|ROBO4	REV__nc|ENSG00000154133|Q8WZ75-2|ROBO4	MULTI-SECPEP	OvCa9_classI_Rep3	3	477.2745666503906	2	476.302927	950.591301	0.19893	9.4752E-05	-0.064424	-3.0685E-05	0.13451	6.4067E-05	476.30268621468116	78.023	0.54736	75.67	75.402	75.949	-2.3527					17	10	3	0	0	0	0.028476	1	4149	4149		31.955	14.59	1	12760	+		44492	20360	36801	36824	47972	47972					0.11402941065182404
PVKKEQIPELV	11	Unmodified	_PVKKEQIPELV_					0	0	0		tr|A0A553SKF5|A0A553SKF5_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_18620PE=4SV=1	tr|A0A553SKF5|A0A553SKF5_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_18620PE=4SV=1	tr|A0A553SKF5|A0A553SKF5_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_18620PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	426.2709045410156	3	427.258856	1278.75474	1.379	0.0005892	-1.6598	-0.00070915	-0.28075	-0.00011995	427.25805623347634	68.051	0.75044	65.164	64.99	65.74	-2.8873					20	14	2	0	0	0	0.02616	1	2972	2972		25.068	9.7347	1	18343			44493	33610	36802	36825	47973	47973					0.12651074325549416
PVKKLVEKRVV	11	Unmodified	_PVKKLVEKRVV_					0	0	0			REV__ENSG00000118898|ENST00000345988|PPL	REV__ENSG00000118898|ENST00000345988|PPL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	433.2491760253906	3	432.29049	1293.84964	0.64226	0.00027764	-0.31663	-0.00013688	0.32564	0.00014077	432.2903025812534	51.925	0.50612	48.751	48.522	49.028	-3.1734					16	9	2	0	0	0	0.026204	1	3087	3087		21.78	12.981	1	22115	+		44494	18419	36803	36826	47974	47974					0.2144705258740487
PVKKLVEKRVV	11	Unmodified	_PVKKLVEKRVV_					0	0	0			REV__ENSG00000118898|ENST00000345988|PPL	REV__ENSG00000118898|ENST00000345988|PPL	MULTI-MATCH	OvCa9_classI_Rep2	2		3	432.29049	1293.84964	-1.4221	-0.00061477	1.3943	0.00060275	-0.027802	-1.2019E-05	432.290971787503	51.22	0.6454	48.415	48.063	48.708	-2.8048	-0.16833	0.0011502	NaN	21.78	23	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15120	+		44495	18419	36803	36826							0.2144705258740487
PVKLGPSRLV	10	Unmodified	_PVKLGPSRLV_					0	0	0			REV__nc|ENSG00000187764|Q92854-2|SEMA4D	REV__nc|ENSG00000187764|Q92854-2|SEMA4D	MULTI-MSMS	OvCa9_classI_Rep2	2	533.3401489257812	2	533.342584	1064.67061	-5.4005	-0.0028803	1.293	0.00068962	-4.1075	-0.0021907	533.3431631989303	156.44	1.0857	156.21	155.92	157	-0.22696					71	26	4	0	0	0	0.73063	1	15928	15928		27.047	5.0874	1	260540	+		44496	29061	36804	36827	47975	47975					0.1408658801931324
PVKNVLLAR	9	Unmodified	_PVKNVLLAR_					0	0	0			REV__chr17:50187537-50188742|164|236.39|0.1|11.19|-|1|COL1A1,COL1A1|1	REV__chr17:50187537-50188742|164|236.39|0.1|11.19|-|1|COL1A1,COL1A1|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.8086853027344	2	505.329476	1008.6444	0.060672	3.0659E-05	-0.5558	-0.00028086	-0.49513	-0.0002502	505.3291044339654	71.654	1.8272	69.147	68.858	70.685	-2.5072					76	34	5	0	0	0	0.027462	1	5923	5923		27.882	0	1	555060	+		44497	15947	36805	36828	47976	47976					0.14042318847839397
PVKPLVRPT	9	Unmodified	_PVKPLVRPT_					0	0	0			REV__FANCA|p.E886Rfs*3|1|0.09|ENSG00000187741|chr16:89765012-89765012|C/-|frameshift_variant	REV__FANCA|p.E886Rfs*3|1|0.09|ENSG00000187741|chr16:89765012-89765012|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	503.7786560058594	2	503.824027	1005.6335	-2.757	-0.0013891	2.4133	0.0012159	-0.34376	-0.0001732	503.82506672233444	35.652	0.59961	32.942	32.75	33.35	-2.7097					18	11	2	0	0	0	0.027462	1	1510	1510		21.96	4.5949	1	23910	+		44498	22659	36806	36829	47977	47977					0.13090916473549896
PVKRDLTA	8	Unmodified	_PVKRDLTA_					0	0	0			REV__ENST00000464874.1_1_7:105515663-105517004:-|nuORF	REV__ENST00000464874.1_1_7:105515663-105517004:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.2702941894531	2	450.269084	898.523616	0.66588	0.00029983	-1.2562	-0.00056561	-0.59027	-0.00026578	450.2683337986321	61.743	3.9648	58.286	57.567	61.531	-3.4577					187	81	5	0	0	0	0.66057	1	4273	4273		51.335	3.4199	1	30469000	+		44499	20027	36807	36830	47978	47978					0.07029491134369437
PVKSKGPPDLL	11	Unmodified	_PVKSKGPPDLL_					0	0	0			REV__nc|ENSG00000112851|Q96RT1-6|ERBIN	REV__nc|ENSG00000112851|Q96RT1-6|ERBIN	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8427734375	2	575.845156	1149.67576	-4.018	-0.0023138	0.54994	0.00031668	-3.4681	-0.0019971	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.69455	1	12102	12102		31.53	0	1	445630	+		44500	28801	36808	36831	47979	47979					0.10690847091291289
PVKTRDLLIV	10	Unmodified	_PVKTRDLLIV_					0	0	0			REV__ENSG00000135740|ENST00000299798|SLC9A5	REV__ENSG00000135740|ENST00000299798|SLC9A5	MULTI-MSMS	OvCa9_classI_Rep3	3	577.3662109375	2	577.368798	1152.72304	-7.5995	-0.0043877	4.078	0.0023545	-3.5215	-0.0020332	577.3709835310325	161.44	1.2472	160.07	159.69	160.93	-1.3692					76	25	4	0	0	0	0.7759	1	14021	14021		21.96	2.8564	1	379650	+		44501	19316	36809	36832	47980	47980					0.1527912636227029
PVKTRGAPPL	10	Unmodified	_PVKTRGAPPL_					0	0	0			REV__ENST00000505654.1_2_5:102201638-102201800:+|nuORF	REV__ENST00000505654.1_2_5:102201638-102201800:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	518.3165283203125	2	518.319109	1034.62366	-0.11493	-5.9568E-05	-4.0503	-0.0020994	-4.1652	-0.0021589	518.3169369231541	136.26	0.73642	136.04	135.76	136.5	-0.22696					22	14	2	0	0	0	0.64697	1	13536	13536		36.447	0.82846	1	172490	+		44502	26879	36810	36833	47981	47981					0.10773728468188892
PVKWLHLG	8	Unmodified	_PVKWLHLG_					0	0	0			REV__nc|ENSG00000142330|Q9HC96-3|CAPN10	REV__nc|ENSG00000142330|Q9HC96-3|CAPN10	MULTI-MSMS	OvCa99_classI_Rep5	1	475.2837219238281	2	475.284537	948.554522	0.03186	1.5143E-05	-4.2543	-0.002022	-4.2224	-0.0020069	475.2823931991299	52.95	0.69084	52.95	52.741	53.432	0					38	15	4	0	0	0	0.74679	1	4201	4201		28.254	1.5614	1	4122700	+		44503	28900	36811	36834	47982	47982					0.07818689239275045
PVKYHHVGKL	10	Unmodified	_PVKYHHVGKL_					0	0	0		nc|ENSG00000101856|O00264-2|PGRMC1	nc|ENSG00000101856|O00264-2|PGRMC1	nc|ENSG00000101856|O00264-2|PGRMC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3402709960938	2	589.345658	1176.67676	-0.99558	-0.00058674	-3.6036	-0.0021238	-4.5992	-0.0027105	589.3433618627441	145.15	3.8411	143.72	141.74	145.58	-1.4357					179	73	4	0	0	0	0.75313	1	14255	14255		24.519	0.31644	1	92509			44504	14930	36812	36835	47983	47983					0.09549106250847217
PVLCCYDDVL	10	Unmodified	_PVLCCYDDVL_					0	0	0			REV__nc|ENSG00000146576|Q96N11-2|INTS15	REV__nc|ENSG00000146576|Q96N11-2|INTS15	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.3123779296875	2	570.25921	1138.50387	1.039	0.00059252	-2.2079	-0.0012591	-1.1689	-0.00066656	570.2577775144943	156	0.71075	156	155.73	156.45	0					29	13	4	0	0	0	0.026752	1	18268	18268		35.618	0	1	63758	+		44505	20023	36813	36836	47984	47984					-0.05984388982915334
PVLCKDAVPE	10	Unmodified	_PVLCKDAVPE_					0	0	0		ENST00000412159.1_1_X:65719062-65719263:+|nuORF	ENST00000412159.1_1_X:65719062-65719263:+|nuORF	ENST00000412159.1_1_X:65719062-65719263:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.7643432617188	2	535.781167	1069.54778	-1.0385	-0.0005564	-2.3888	-0.0012798	-3.4272	-0.0018363	535.7804147995098	79.177	0.14395	76.425	76.322	76.466	-2.7514					4	2	2	0	0	0	0.026553	1	6406	6406		47.657	0	1	8814.7			44506	11547	36814	36837	47985	47985					0.01578963505721731
PVLEKLKAINN	11	Unmodified	_PVLEKLKAINN_					0	0	0		ENSG00000185728|ENST00000539294|YTHDF3	ENSG00000185728|ENST00000539294|YTHDF3	ENSG00000185728|ENST00000539294|YTHDF3	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8772583007812	2	619.876988	1237.73942	0.95751	0.00059354	-1.3379	-0.00082932	-0.38037	-0.00023578	619.8763018361122	140.29	1.1669	138.8	138.2	139.37	-1.4952					41	22	3	0	0	0	0.71789	1	13680	13680		23.523	0.48021	1	37394			44507	8277	36815	36838	47986	47986					0.1300620752838313
PVLKNAIS	8	Unmodified	_PVLKNAIS_					0	0	0		ENSG00000163171|ENST00000295324|CDC42EP3	ENSG00000163171|ENST00000295324|CDC42EP3	ENSG00000163171|ENST00000295324|CDC42EP3	MULTI-MSMS	OvCa9_classI_Rep3	3	421.2590637207031	2	421.260728	840.506903	-0.16203	-6.8257E-05	-2.9992	-0.0012634	-3.1612	-0.0013317	421.2593246005652	135.39	1.3287	134.28	133.92	135.24	-1.1076					52	26	3	0	0	0	0.75915	1	10961	10961		20.482	0	1	253370			44508	6276	36816	36839	47987	47987					0.08026990248424681
PVLKVRSM	8	Unmodified	_PVLKVRSM_					0	0	0		ENSG00000108771|ENST00000251642|DHX58;ENST00000592024.1_1_17:40253781-40254356:-|nuORF	ENSG00000108771|ENST00000251642|DHX58	ENSG00000108771|ENST00000251642|DHX58	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.2857360839844	2	465.28368	928.552807	-0.22765	-0.00010592	4.308	0.0020044	4.0803	0.0018985	465.2855847072139	143.15	1.5248	141.71	141.35	142.88	-1.4427					87	29	5	0	0	0	0.71369	1	14021	14021		40.573	8.6178	1	628240			44509	2672	36817	36840	47988	47988					0.08567312159016183
PVLLPGAAGF	10	Unmodified	_PVLLPGAAGF_					0	0	0		nc|ENSG00000117500|Q9Y3A6-2|TMED5;ENSG00000117500|ENST00000370282|TMED5	nc|ENSG00000117500|Q9Y3A6-2|TMED5	nc|ENSG00000117500|Q9Y3A6-2|TMED5	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.88018798828125	2	471.276378	940.538203	-0.26996	-0.00012723	-1.7057	-0.00080387	-1.9757	-0.0009311	471.2742799188171	39.129	0.44781	39.129	38.972	39.42	0					13	9	3	0	0	0	0.026839	1	2294	2294		19.36	0	1	60474			44510	3258	36818	36841	47989	47989					0.06555563282518051
PVLLVGKLRLR	11	Unmodified	_PVLLVGKLRLR_					0	0	0		ENST00000418747.2_1_9:130877356-130879998:-|nuORF	ENST00000418747.2_1_9:130877356-130879998:-|nuORF	ENST00000418747.2_1_9:130877356-130879998:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	632.4307861328125	2	632.434807	1262.85506	-5.7395	-0.0036299	-0.067111	-4.2443E-05	-5.8066	-0.0036723	632.4345273657251	163.44	1.2114	163.21	162.72	163.93	-0.22696					106	40	3	0	0	0	0.7254	1	16670	16670		10.265	4.3441	1	356230			44511	11644	36819	36842	47990	47990					0.2341477616987504
PVLLYLNSL	9	Unmodified	_PVLLYLNSL_					0	0	0			REV__ENSG00000171944|ENST00000307388|OR52A5	REV__ENSG00000171944|ENST00000307388|OR52A5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.2634887695312	2	516.310418	1030.60628	-0.69481	-0.00035874	-3.6823	-0.0019012	-4.3771	-0.0022599	516.3083569392699	55.905	1.0126	52.61	52.311	53.323	-3.2944					37	19	3	0	0	0	0.027462	1	3577	3577		25.45	0	1	334150	+		44512	21662	36820	36843	47991	47991					0.09220388142512093
PVLMLLSTD	9	Unmodified	_PVLMLLSTD_					0	0	0		NUP214|p.A1512Sfs*24|1|0.04|ENSG00000126883|chr9:131198026-131198027|-/T|frameshift_variant;nc|ENSG00000126883|P35658-2|NUP214;nc|ENSG00000126883|P35658-4|NUP214;ENSG00000126883|ENST00000359428|NUP214;nc|ENSG00000126883|P35658-3|NUP214;nc|ENSG00000126883|P35658-5|NUP214	NUP214|p.A1512Sfs*24|1|0.04|ENSG00000126883|chr9:131198026-131198027|-/T|frameshift_variant	NUP214|p.A1512Sfs*24|1|0.04|ENSG00000126883|chr9:131198026-131198027|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.7988586425781	2	494.772811	987.531069	1.0109	0.00050016	-2.8601	-0.0014151	-1.8492	-0.00091492	494.77080619794657	36.013	1.4956	33.164	32.74	34.235	-2.849					44	29	2	0	0	0	0.027462	1	1205	1205		20.482	0	1	28916			44513	3809	36821	36844	47992	47992					0.0368046261978634
PVLMLRPLV	9	Unmodified	_PVLMLRPLV_					0	0	0			REV__ENSG00000100485|ENST00000216373|SOS2	REV__ENSG00000100485|ENST00000216373|SOS2	MULTI-MSMS	OvCa9_classI_Rep3	3	519.332275390625	2	519.33063	1036.64671	0.67622	0.00035118	2.4927	0.0012945	3.1689	0.0016457	519.3318594599918	71.111	1.2027	68.392	68.008	69.211	-2.7196					78	23	4	0	0	0	0.50066	2	3305	3305;3319		42.474	3.6683	1	1378400	+		44514	17422	36822	36845	47993;47994	47993					0.12985031261268887
PVLPRLDPE	9	Unmodified	_PVLPRLDPE_					0	0	0		ENSG00000148153|ENST00000374242|INIP	ENSG00000148153|ENST00000374242|INIP	ENSG00000148153|ENST00000374242|INIP	MULTI-MSMS	OvCa99_classI_Rep5	1	518.2969970703125	2	518.295299	1034.57605	1.5798	0.00081879	0.10664	5.5269E-05	1.6864	0.00087406	518.2953777418106	91.393	1.3696	91.393	91.016	92.385	0					87	32	4	0	0	0	0.1243	1	9832	9832		90.601	20.973	1	13699000			44515	5387	36823	36846	47995	47995					0.06014029477319127
PVLPSSLRQQP	11	Unmodified	_PVLPSSLRQQP_					0	0	0			REV__ENSG00000131381|ENST00000253699|RBSN	REV__ENSG00000131381|ENST00000253699|RBSN	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.2264709472656	3	407.903183	1220.68772	0.63322	0.00025829	-0.96358	-0.00039305	-0.33037	-0.00013476	407.9028320869948	38.17	0.4539	38.17	37.94	38.394	0					15	9	3	0	0	0	0.025722	1	2158	2158		27.644	0	1	24382	+		44516	19009	36824	36847	47996	47996					0.08620463834449765
PVLQNLRVDL	10	Unmodified	_PVLQNLRVDL_					0	0	0		ENST00000470145.2_1_20:31016136-31017171:+|nuORF	ENST00000470145.2_1_20:31016136-31017171:+|nuORF	ENST00000470145.2_1_20:31016136-31017171:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.314697265625	2	583.84823	1165.68191	2.4667	0.0014402	-0.54376	-0.00031747	1.923	0.0011227	583.8477979274494	89.38	1.6786	89.38	88.508	90.186	0					52	40	2	0	0	0	0.026956	1	9586	9586		26.693	17.999	1	238170			44517	12357	36825	36848	47997	47997					0.1056936532279451
PVLRPLPGL	9	Unmodified	_PVLRPLPGL_					0	0	0			REV__ENST00000248553.6_1_7:75932073-75932106:+|nuORF	REV__ENST00000248553.6_1_7:75932073-75932106:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	481.3125305175781	2	481.313295	960.612037	0.1367	6.5794E-05	-0.25624	-0.00012333	-0.11954	-5.7538E-05	481.31300277026764	111.59	1.6261	111.45	110.98	112.61	-0.13961					80	32	4	0	0	0	0.39645	2	10552	10542;10552		52.299	11.727	1	293810	+		44518	23847	36826	36849	47998;47999	47999					0.130155314448416
PVLRPLPGL	9	Unmodified	_PVLRPLPGL_					0	0	0			REV__ENST00000248553.6_1_7:75932073-75932106:+|nuORF	REV__ENST00000248553.6_1_7:75932073-75932106:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	481.3117370605469	2	481.313295	960.612037	1.817	0.00087454	-1.9869	-0.0009563	-0.16987	-8.1761E-05	481.31217861874296	112.56	2.0052	111.49	110.97	112.98	-1.0753					88	39	4	0	0	0	0.42057	3	8226	8215;8226;8232		50.025	2.1089	1	315220	+		44519	23847	36826	36849	48000;48001;48002	48001					0.130155314448416
PVLRPLPGL	9	Unmodified	_PVLRPLPGL_					0	0	0			REV__ENST00000248553.6_1_7:75932073-75932106:+|nuORF	REV__ENST00000248553.6_1_7:75932073-75932106:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	481.313295	960.612037	0.1367	6.5794E-05	-0.25624	-0.00012333	-0.11954	-5.7538E-05	481.31300277026764	111.59	1.6261	111.45	110.98	112.61	-0.13961	0.0072224	0.00070785	NaN	52.299	80	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	293810	+		44520	23847	36826	36849							0.130155314448416
PVLRPLPGL	9	Unmodified	_PVLRPLPGL_					0	0	0			REV__ENST00000248553.6_1_7:75932073-75932106:+|nuORF	REV__ENST00000248553.6_1_7:75932073-75932106:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	481.313295	960.612037	1.817	0.00087454	-1.9869	-0.0009563	-0.16987	-8.1761E-05	481.31217861874296	112.56	2.0052	111.49	110.97	112.98	-1.0753	0.047515	-0.00095809	NaN	52.299	88	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	315220	+		44521	23847	36826	36849							0.130155314448416
PVLRPQGA	8	Unmodified	_PVLRPQGA_					0	0	0			REV__ENSG00000248905|ENST00000616417|FMN1	REV__ENSG00000248905|ENST00000616417|FMN1	MULTI-MSMS	OvCa99_classI_Rep5	1	419.2502746582031	2	419.250695	836.486836	0.087662	3.6752E-05	0.72779	0.00030513	0.81545	0.00034188	419.25066405233747	47.676	0.8251	47.676	47.379	48.204	0					45	18	3	0	0	0	0.65582	1	3458	3458		52.299	2.2746	1	779380	+		44522	23486	36827	36850	48003	48003					0.06205239308462751
PVLRPQGA	8	Unmodified	_PVLRPQGA_					0	0	0			REV__ENSG00000248905|ENST00000616417|FMN1	REV__ENSG00000248905|ENST00000616417|FMN1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	419.250695	836.486836	0.087662	3.6752E-05	0.72779	0.00030513	0.81545	0.00034188	419.25066405233747	47.676	0.8251	47.676	47.379	48.204	0	-0.12705	-0.00018579	NaN	52.299	45	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	779380	+		44523	23486	36827	36850							0.06205239308462751
PVLRPQGA	8	Unmodified	_PVLRPQGA_					0	0	0			REV__ENSG00000248905|ENST00000616417|FMN1	REV__ENSG00000248905|ENST00000616417|FMN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	419.250695	836.486836	-0.82147	-0.0003444	1.0864	0.00045549	0.26498	0.00011109	419.2509771247016	50.731	0.49293	47.937	47.68	48.172	-2.794	0.1339	0.00011494	NaN	52.299	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6905.6	+		44524	23486	36827	36850							0.06205239308462751
PVLRPQGA	8	Unmodified	_PVLRPQGA_					0	0	0			REV__ENSG00000248905|ENST00000616417|FMN1	REV__ENSG00000248905|ENST00000616417|FMN1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	419.250695	836.486836	-1.3684	-0.00057371	1.1172	0.00046837	-0.25126	-0.00010534	419.2510099283779	50.969	0.55612	47.796	47.516	48.072	-3.1734	-0.0068521	0.0001407	NaN	52.299	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19841	+		44525	23486	36827	36850							0.06205239308462751
PVLRVPSSK	9	Unmodified	_PVLRVPSSK_					0	0	0		ENST00000300061.2_1_16:23194066-23197666:+|nuORF	ENST00000300061.2_1_16:23194066-23197666:+|nuORF	ENST00000300061.2_1_16:23194066-23197666:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.77862548828125	2	491.805834	981.597115	-0.40586	-0.00019961	-0.19873	-9.7736E-05	-0.60459	-0.00029734	491.8059410883596	53.034	0.21601	53.034	52.956	53.172	0					7	4	2	0	0	0	0.027462	1	4200	4200		38.806	16.846	1	92495			44526	10168	36828	36851	48004	48004					0.10558039576847023
PVLSVLKEV	9	Unmodified	_PVLSVLKEV_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.8017883300781	2	492.310418	982.606283	0.33841	0.0001666	-4.2991	-0.0021165	-3.9607	-0.0019499	492.3081742471691	61.77	1.2982	58.312	58.01	59.309	-3.4577					33	26	2	0	0	0	0.027462	1	4215	4215		25.574	6.2141	1	147000	+		44527	23052	36829	36852	48005	48005					0.11428388142519452
PVLVGGISINE	11	Unmodified	_PVLVGGISINE_					0	0	0			REV__nc|ENSG00000119865|Q96F85-2|CNRIP1	REV__nc|ENSG00000119865|Q96F85-2|CNRIP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.31396484375	2	549.313689	1096.61282	0.63087	0.00034654	-3.4204	-0.0018789	-2.7895	-0.0015323	549.3116312947706	37.41	1.3447	34.518	34.142	35.487	-2.8925					68	26	4	0	0	0	0.68021	1	1390	1390		36.447	4.8125	1	412270	+		44528	18470	36830	36853	48006	48006					0.06838281303225813
PVLVHVKDE	9	Unmodified	_PVLVHVKDE_					0	0	0		nc|ENSG00000166589|O75309-3|CDH16;CDH16|p.S747Rfs*15|1|0.06|ENSG00000166589|chr16:66910020-66910021|-/GTAAT|frameshift_variant;nc|ENSG00000166589|O75309-4|CDH16;nc|ENSG00000166589|O75309-2|CDH16;ENSG00000166589|ENST00000299752|CDH16	nc|ENSG00000166589|O75309-3|CDH16	nc|ENSG00000166589|O75309-3|CDH16	MULTI-MSMS	OvCa9_classI_Rep2	2	518.294921875	2	518.295299	1034.57605	0.55863	0.00028953	-1.1323	-0.00058686	-0.57366	-0.00029732	518.2947779627386	92.589	2.8086	91.421	91.024	93.832	-1.168					161	54	5	0	0	0	0.33652	2	8271	8271;8283		58.782	6.4758	1	5418500			44529	211	36831	36854	48007;48008	48007					0.06014029477319127
PVLVNLAREL	10	Unmodified	_PVLVNLAREL_					0	0	0			REV__ENST00000446716.5_1_2:220081206-220083551:-|nuORF	REV__ENST00000446716.5_1_2:220081206-220083551:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	562.3427124023438	2	562.345323	1122.67609	-2.9015	-0.0016316	-0.70711	-0.00039764	-3.6086	-0.0020293	562.3448419475409	142.33	4.504	141.32	140	144.5	-1.0106					205	90	3	0	0	0	0.74374	1	11810	11810		25.574	0	1	106680	+		44530	15550	36832	36855	48009	48009					0.11966266811100468
PVLVTPLAE	9	Unmodified	_PVLVTPLAE_					0	0	0			REV__tr|A0A7D6VT96|A0A7D6VT96_9CLOTIron-containingalcoholdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07140PE=4SV=1	REV__tr|A0A7D6VT96|A0A7D6VT96_9CLOTIron-containingalcoholdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07140PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.2721252441406	2	469.781493	937.548434	-0.85638	-0.00040231	-2.1068	-0.00098972	-2.9631	-0.001392	469.78035140401926	27.415	0.30033	27.415	27.291	27.591	0					7	5	2	0	0	0	0.027462	1	803	803		16.473	0	1	29388	+		44531	31583	36833	36856	48010	48010					0.07716126217087549
PVMLWISAL	9	Unmodified	_PVMLWISAL_					0	0	0		tr|A0A553SKP4|A0A553SKP4_NIACIFlotillin-likeproteinFloAOS=NialliacirculansOX=1397GN=floAPE=3SV=1	tr|A0A553SKP4|A0A553SKP4_NIACIFlotillin-likeproteinFloAOS=NialliacirculansOX=1397GN=floAPE=3SV=1	tr|A0A553SKP4|A0A553SKP4_NIACIFlotillin-likeproteinFloAOS=NialliacirculansOX=1397GN=floAPE=3SV=1	MSMS	OvCa99_classI_Rep5	1	515.29638671875	2	515.293714	1028.57287	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.486	1	84.486	83.986	84.986	0								0	0	0	0.13856	1	8828	8828		65.897	2.919	1				44532	33639	36834	36857	48011	48011					0.05973063098963394
PVMRSAPVPK	10	Unmodified	_PVMRSAPVPK_					0	0	0			REV__ENST00000391834.6_1_19:50372434-50372704:-|nuORF	REV__ENST00000391834.6_1_19:50372434-50372704:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	541.3151245117188	2	541.312969	1080.61138	-0.38893	-0.00021053	3.9717	0.0021499	3.5828	0.0019394	541.3149781627068	133.47	0.93706	133.24	132.92	133.85	-0.22696					37	17	3	0	0	0	0.59703	1	13200	13200		42.396	3.59	1	101750	+		44533	25242	36835	36858	48012	48012					0.07430368733480464
PVNAPRRIKG	10	Unmodified	_PVNAPRRIKG_					0	0	0			REV__KCNA10|p.K435Efs*35|1|0.07|ENSG00000143105|chr1:110517485-110517486|-/C|frameshift_variant	REV__KCNA10|p.K435Efs*35|1|0.07|ENSG00000143105|chr1:110517485-110517486|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.3416748046875	2	554.340907	1106.66726	1.1701	0.00064865	-1.5221	-0.00084378	-0.35199	-0.00019512	554.3399028831741	37.26	1.048	34.368	34.092	35.14	-2.8925					53	20	4	0	0	0	0.66721	1	1351	1351		34.173	4.331	1	225750	+		44534	19816	36836	36859	48013	48013					0.11819337965312116
PVNHSLDL	8	Unmodified	_PVNHSLDL_					0	0	0		nc|ENSG00000175387|Q15796-2|SMAD2;ENSG00000175387|ENST00000262160|SMAD2	nc|ENSG00000175387|Q15796-2|SMAD2	nc|ENSG00000175387|Q15796-2|SMAD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	447.223388671875	2	447.737617	893.460681	-0.21616	-9.6782E-05	0.31808	0.00014242	0.10192	4.5634E-05	447.73758985898667	37.318	0.50777	37.318	37.023	37.531	0					23	10	4	0	0	0	0.028476	1	2026	2026		35.201	0	1	290140			44535	7540	36837	36860	48014	48014					0.009689253463307068
PVNMDAHLM	9	Unmodified	_PVNMDAHLM_					0	0	0			REV__NSUN2|p.K565Gfs*9|1|0.04|ENSG00000037474|chr5:6605316-6605317|TT/-|frameshift_variant	REV__NSUN2|p.K565Gfs*9|1|0.04|ENSG00000037474|chr5:6605316-6605317|TT/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.8165283203125	2	514.238612	1026.46267	-0.080164	-4.1224E-05	-0.39632	-0.0002038	-0.47649	-0.00024503	514.2375528771878	75.805	0.24386	72.867	72.741	72.985	-2.9389					7	4	2	0	0	0	0.027462	1	5998	5998		35.618	0.41757	1	12518	+		44536	16612	36838	36861	48015	48015					-0.049501052317509675
PVNRNLKPDR	10	Unmodified	_PVNRNLKPDR_					0	0	0		nc|ENSG00000033327|Q9UQC2-2|GAB2;ENSG00000033327|ENST00000361507|GAB2	nc|ENSG00000033327|Q9UQC2-2|GAB2	nc|ENSG00000033327|Q9UQC2-2|GAB2	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.55126953125	3	403.566794	1207.67855	0.83126	0.00033547	2.1105	0.00085172	2.9417	0.0011872	403.56758585564677	42.518	0.59679	42.518	42.242	42.839	0					19	13	2	0	0	0	0.026685	1	2728	2728		22.562	8.4756	1	243760			44537	1075	36839	36862	48016	48016					0.08302115268793386
PVNSLPSSH	9	Unmodified	_PVNSLPSSH_					0	0	0		NCOA6|p.A1848Wfs*4|1|0.09|ENSG00000198646|chr20:34740711-34740715|CTGCA/-|frameshift_variant;ENSG00000198646|ENST00000359003|NCOA6	NCOA6|p.A1848Wfs*4|1|0.09|ENSG00000198646|chr20:34740711-34740715|CTGCA/-|frameshift_variant	NCOA6|p.A1848Wfs*4|1|0.09|ENSG00000198646|chr20:34740711-34740715|CTGCA/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	468.7852783203125	2	469.240524	936.466495	-0.15961	-7.4896E-05	0.60719	0.00028492	0.44758	0.00021002	469.24063309125796	47.56	0.47423	47.56	47.294	47.768	0					18	10	3	0	0	0	0.027433	1	3437	3437		54.776	21.261	1	306930			44538	8841	36840	36863	48017	48017					-0.004279761419979877
PVNSTELSKV	10	Unmodified	_PVNSTELSKV_					0	0	0		tr|A0A7D6ZUB5|A0A7D6ZUB5_9CLOTBlaI/MecI/CopYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23450PE=3SV=1	tr|A0A7D6ZUB5|A0A7D6ZUB5_9CLOTBlaI/MecI/CopYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23450PE=3SV=1	tr|A0A7D6ZUB5|A0A7D6ZUB5_9CLOTBlaI/MecI/CopYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23450PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	537.29638671875	2	537.295496	1072.57644	-1.8238	-0.00097994	1.936	0.0010402	0.11218	6.0273E-05	537.2965706710853	60.933	2.3725	58.163	57.501	59.873	-2.7702					136	45	4	0	0	0	0.46756	1	4474	4474		58.782	0.55203	1	2338900			44539	35772	36841	36864	48018	48018					0.04305404406522939
PVNTGGVPKN	10	Unmodified	_PVNTGGVPKN_					0	0	0			REV__ENST00000479518.1_1_13:96236855-96239862:-|nuORF	REV__ENST00000479518.1_1_13:96236855-96239862:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.8047180175781	2	491.769448	981.524344	0.17391	8.5522E-05	-0.69412	-0.00034135	-0.52021	-0.00025582	491.76884503855376	58.047	1.1562	54.703	54.393	55.549	-3.3449					37	22	4	0	0	0	0.026849	1	3867	3867		40.778	11.629	1	86102	+		44540	26439	36842	36865	48019	48019					0.03284285783422547
PVNTGGVPKN	10	Unmodified	_PVNTGGVPKN_					0	0	0			REV__ENST00000479518.1_1_13:96236855-96239862:-|nuORF	REV__ENST00000479518.1_1_13:96236855-96239862:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	491.769448	981.524344	-0.04804	-2.3625E-05	-0.87627	-0.00043092	-0.92431	-0.00045455	491.768958191607	57.392	1.042	54.6	54.03	55.072	-2.792	-0.051106	-0.00010306	NaN	40.778	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33363	+		44541	26439	36842	36865							0.03284285783422547
PVPASAPIPF	10	Unmodified	_PVPASAPIPF_					0	0	0		VPS13A-SLC44A1|2|fusion;VPS13A-SLC44A1|1|fusion;nc|ENSG00000070214|Q8WWI5-3|SLC44A1;nc|ENSG00000070214|Q8WWI5-2|SLC44A1;ENSG00000070214|ENST00000374720|SLC44A1	VPS13A-SLC44A1|2|fusion	VPS13A-SLC44A1|2|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	498.2821350097656	2	498.28166	994.548768	-0.41723	-0.0002079	0.29547	0.00014723	-0.12177	-6.0673E-05	498.2816571764264	132.68	1.1796	131.56	131.24	132.42	-1.1249					65	23	4	0	0	0	0.56767	1	10630	10630		45.952	5.3793	1	310840			44542	36300	36843	36866	48020	48020					0.05127545936943534
PVPEHLDNI	9	Unmodified	_PVPEHLDNI_					0	0	0		SALL1|p.I1085Tfs*17|1|0.14|ENSG00000103449|chr16:51138968-51138969|-/G|frameshift_variant;ENSG00000103449|ENST00000251020|SALL1;nc|ENSG00000103449|Q9NSC2-2|SALL1;ENST00000438101.1_1_X:49431298-49432372:-|nuORF	SALL1|p.I1085Tfs*17|1|0.14|ENSG00000103449|chr16:51138968-51138969|-/G|frameshift_variant	SALL1|p.I1085Tfs*17|1|0.14|ENSG00000103449|chr16:51138968-51138969|-/G|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.7957763671875	2	517.269281	1032.52401	-0.44422	-0.00022978	-3.5927	-0.0018584	-4.0369	-0.0020882	517.2673075271409	43.047	0.42955	43.047	42.883	43.312	0					14	9	2	0	0	0	0.027462	1	2802	2802		37.159	0	1	170730			44543	2317	36844	36867	48021	48021					0.009048660635471606
PVPETLGK	8	Unmodified	_PVPETLGK_					0	0	0		Harlequin-int_dup161|chr4:91353598-91357139:-|1.3911466287095282|0.2716421829311496|2.36|422.0|25|1|sense	Harlequin-int_dup161|chr4:91353598-91357139:-|1.3911466287095282|0.2716421829311496|2.36|422.0|25|1|sense	Harlequin-int_dup161|chr4:91353598-91357139:-|1.3911466287095282|0.2716421829311496|2.36|422.0|25|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	420.215087890625	2	420.744911	839.475269	-0.25747	-0.00010833	-3.3878	-0.0014254	-3.6453	-0.0015337	420.74356070837223	38.137	0.4539	38.137	37.94	38.394	0					14	9	2	0	0	0	0.028476	1	2159	2159		42.474	3.6683	1	80865			44544	14366	36845	36868	48022	48022					0.049109974944940404
PVPGGGGA	8	Unmodified	_PVPGGGGA_					0	0	0		ENSG00000170577|ENST00000303077|SIX2	ENSG00000170577|ENST00000303077|SIX2	ENSG00000170577|ENST00000303077|SIX2	MULTI-SECPEP	OvCa99_classI_Rep5	1	610.8756713867188	1	611.314751	610.307475	-0.52651	-0.00032186	-3.7395	-0.002286	-4.266	-0.0026078	611.3146346944329	33.967	0.38464	33.967	33.728	34.113	0					12	7	3	0	0	0	0.028476	1	1596	1596		24.504	0	1	28536			44545	7119	36846	36869	48023	48023					-0.013266449794855362
PVPKVVHSYL	10	Unmodified	_PVPKVVHSYL_					0	0	0			REV__ENSG00000171243|ENST00000307068|SOSTDC1	REV__ENSG00000171243|ENST00000307068|SOSTDC1	MULTI-MSMS	OvCa9_classI_Rep2	2	569.8323974609375	2	569.834591	1137.65463	-0.84571	-0.00048192	-0.21981	-0.00012526	-1.0655	-0.00060717	569.8345191856214	98.031	6.1334	97.138	96.776	102.91	-0.89305					325	123	5	0	0	0	0.46756	1	9017	9017		58.782	10.866	1	9613600	+		44546	21606	36847	36870	48024	48024					0.09130881782425604
PVPLDMDATFL	11	Unmodified	_PVPLDMDATFL_					0	0	0			REV__tr|A0A553SMQ2|A0A553SMQ2_NIACIcysteine-S-conjugatebeta-lyaseOS=NialliacirculansOX=1397GN=CEQ21_22870PE=3SV=1	REV__tr|A0A553SMQ2|A0A553SMQ2_NIACIcysteine-S-conjugatebeta-lyaseOS=NialliacirculansOX=1397GN=CEQ21_22870PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	609.8113403320312	2	609.807382	1217.60021	2.169	0.0013227	1.7842	0.001088	3.9532	0.0024107	609.8086321099138	117.58	1.4007	117.58	117.27	118.67	0					52	29	2	0	0	0	0.64273	1	13460	13460		40.778	1.5253	1	428650	+		44547	30358	36848	36871	48025	48025					0.00011501848666739534
PVPLLQTT	8	Unmodified	_PVPLLQTT_					0	0	0		ENSG00000135912|ENST00000392102|TTLL4	ENSG00000135912|ENST00000392102|TTLL4	ENSG00000135912|ENST00000392102|TTLL4	MULTI-MSMS	OvCa9_classI_Rep2	2	434.75933837890625	2	434.760561	867.506569	-0.54476	-0.00023684	-2.3576	-0.001025	-2.9023	-0.0012618	434.7594502813862	138.35	2.0585	138.12	137.54	139.6	-0.22697					104	41	4	0	0	0	0.75991	1	13838	13838		21.702	1.2205	1	279250			44548	4426	36849	36872	48026	48026					0.06751570528570028
PVPLSITL	8	Unmodified	_PVPLSITL_					0	0	0			REV__ENSG00000104848|ENST00000221444|KCNA7	REV__ENSG00000104848|ENST00000221444|KCNA7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	421.23602294921875	2	420.265479	838.516405	-1.6011	-0.00067289	-1.0583	-0.00044476	-2.6594	-0.0011176	420.26503317218396	43.675	0.654	40.667	40.483	41.137	-3.0074					18	12	2	0	0	0	0.028476	1	2146	2146		13.775	0	1	27345	+		44549	17685	36850	36873	48027	48027					0.09068758533931032
PVPPLDVLKL	10	Unmodified	_PVPPLDVLKL_					0	0	0		nc|ENSG00000096070|Q9ULD4-3|BRPF3;nc|ENSG00000096070|Q9ULD4-2|BRPF3;ENSG00000096070|ENST00000357641|BRPF3	nc|ENSG00000096070|Q9ULD4-3|BRPF3	nc|ENSG00000096070|Q9ULD4-3|BRPF3	MULTI-SECPEP	OvCa9_classI_Rep2	2	545.8303833007812	2	545.847167	1089.67978	0.28135	0.00015357	-0.98954	-0.00054014	-0.70819	-0.00038656	545.8464768688402	81.336	1.2872	79.688	79.465	80.752	-1.6485					55	24	4	0	0	0	0.027088	1	6973	6973		19.997	0	1	153810			44550	1944	36851	36874	48028	48028					0.13852936584976305
PVPPPPVEEP	10	Unmodified	_PVPPPPVEEP_					0	0	0			REV__nc|ENSG00000290292|Q8IX15|HOMEZ	REV__nc|ENSG00000290292|Q8IX15|HOMEZ	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.30029296875	2	529.281857	1056.54916	-1.196	-0.00063302	0.79458	0.00042055	-0.40143	-0.00021247	529.2815480446868	48.392	1.0302	45.284	44.888	45.918	-3.1077					26	19	2	0	0	0	0.026752	1	2727	2727		53.351	24.181	1	22368	+		44551	29211	36852	36875	48029	48029					0.023149208661379816
PVPPRVAIL	9	Unmodified	_PVPPRVAIL_					0	0	0			REV__nc|ENSG00000149480|O94776-2|MTA2	REV__nc|ENSG00000149480|O94776-2|MTA2	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.3128967285156	2	481.313295	960.612037	0.23329	0.00011228	-0.56103	-0.00027003	-0.32775	-0.00015775	481.31286467483017	112.83	1.2876	111.39	110.91	112.2	-1.4461					73	25	4	0	0	0	0.57242	1	10437	10437		35.201	1.6851	1	383100	+		44552	20164	36853	36876	48030	48030					0.130155314448416
PVPPTQVQKL	10	Unmodified	_PVPPTQVQKL_					0	0	0		nc|ENSG00000163618|Q9ULU8-2|CADPS;nc|ENSG00000163618|Q9ULU8-3|CADPS;ENSG00000163618|ENST00000383710|CADPS;nc|ENSG00000163618|Q9ULU8-4|CADPS;ENST00000490424.1_1_3:62521978-62535788:-|nuORF	nc|ENSG00000163618|Q9ULU8-2|CADPS	nc|ENSG00000163618|Q9ULU8-2|CADPS	MULTI-MSMS	OvCa9_classI_Rep2	2	553.829833984375	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.73378	1	14174	14174		26.693	2.4902	1	245610			44553	6334	36854	36877	48031	48031					0.10094577919812764
PVPRISVKT	9	Unmodified	_PVPRISVKT_					0	0	0		ENST00000485639.1_1_8:67405886-67426403:+|nuORF;ENSG00000169085|ENST00000305454|VXN	ENST00000485639.1_1_8:67405886-67426403:+|nuORF	ENST00000485639.1_1_8:67405886-67426403:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.2995910644531	2	498.813659	995.612765	2.2077	0.0011012	0.0017437	8.6979E-07	2.2095	0.0011021	498.81351000179865	100.52	0.6623	100.52	100.15	100.81	0					30	15	3	0	0	0	0.027462	1	11111	11111		21.96	0	1	1279400			44554	6975	36855	36878	48032	48032					0.114783260938907
PVPRLLGPL	9	Unmodified	_PVPRLLGPL_					0	0	0			REV__ENST00000296978.3_1_6:130687261-130687342:+|nuORF	REV__ENST00000296978.3_1_6:130687261-130687342:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	481.31341552734375	2	481.313295	960.612037	0.1367	6.5794E-05	-0.25624	-0.00012333	-0.11954	-5.7538E-05	481.31300277026764	111.59	1.6261	111.45	110.98	112.61	-0.13961					80	32	4	0	0	0	0.65476	1	10572	10572		25.45	6.0902	1	293810	+		44555	24209	36856	36879	48033	48033					0.130155314448416
PVPSFVRGRR	10	Unmodified	_PVPSFVRGRR_					0	0	0			REV__nc|ENSG00000172367|Q86UT5-4|NHERF4	REV__nc|ENSG00000172367|Q86UT5-4|NHERF4	MULTI-MSMS	OvCa99_classI_Rep5	1	585.8464965820312	2	585.846356	1169.67816	-1.3304	-0.00077942	0.79844	0.00046776	-0.53198	-0.00031166	585.8469076212456	34.563	0.75098	34.563	34.398	35.149	0					29	15	3	0	0	0	0.64697	1	1682	1682		36.447	3.6343	1	472230	+		44556	29007	36857	36880	48034	48034					0.10010740339612312
PVPSGMQVPPA	11	Unmodified	_PVPSGMQVPPA_					0	0	0		ENSG00000176399|ENST00000325870|DMRTA1	ENSG00000176399|ENST00000325870|DMRTA1	ENSG00000176399|ENST00000325870|DMRTA1	MULTI-MSMS	OvCa99_classI_Rep5	1	540.2828369140625	2	540.281334	1078.54812	-0.90782	-0.00049048	3.492	0.0018867	2.5842	0.0013962	540.2832501558785	37.085	1.0029	37.085	36.618	37.621	0					43	21	3	0	0	0	0.67529	1	2011	2011		37.812	3.639	1	418130			44557	7603	36858	36881	48035	48035					0.011983832255964444
PVPTAIIGG	9	Unmodified	_PVPTAIIGG_					0	0	0		ENSG00000110400|ENST00000264025|NECTIN1	ENSG00000110400|ENST00000264025|NECTIN1	ENSG00000110400|ENST00000264025|NECTIN1	MULTI-MSMS	OvCa9_classI_Rep3	3	412.74578857421875	2	412.747453	823.480354	-0.0041108	-1.6967E-06	-3.0137	-0.0012439	-3.0178	-0.0012456	412.74611275073886	135.39	1.6252	134.28	133.62	135.24	-1.1076					83	32	4	0	0	0	0.64339	1	10983	10983		26.796	1.3459	1	589310			44558	2772	36859	36882	48036	48036					0.0615530135711424
PVPVEYRN	8	Unmodified	_PVPVEYRN_					0	0	0			REV__nc|ENSG00000257335|O43451-1|MGAM	REV__nc|ENSG00000257335|O43451-1|MGAM	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.291259765625	2	487.258717	972.50288	-0.12795	-6.2344E-05	-4.3902	-0.0021392	-4.5181	-0.0022015	487.256650219793	46.168	0.39586	43.458	43.3	43.696	-2.7097					11	7	2	0	0	0	0.028476	1	2764	2764		42.474	11.971	1	13361	+		44559	23546	36860	36883	48037	48037					0.015529007547115725
PVPVVRAM	8	Unmodified	_PVPVVRAM_					0	0	0			REV__ENSG00000128731|ENST00000261609|HERC2	REV__ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	434.7607116699219	2	434.757298	867.500044	1.7873	0.00077704	2.594	0.0011278	4.3813	0.0019048	434.75831214384687	139.52	2.3534	138.02	137.27	139.63	-1.4952					101	45	4	0	0	0	0.68312	3	13625	13613;13625;13638		46.766	25.064	1	874370	+		44560	18868	36861	36884	48038;48039;48040	48039					0.06099354096204479
PVPVWVIIL	9	Unmodified	_PVPVWVIIL_					0	0	0		ENSG00000138448|ENST00000261023|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;nc|ENSG00000138448|P06756-3|ITGAV	ENSG00000138448|ENST00000261023|ITGAV;nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.319580078125	2	518.333696	1034.65284	-0.4735	-0.00024543	2.1329	0.0011056	1.6594	0.00086012	518.3343174974098	94.632	0.20026	92.164	92.01	92.21	-2.4685					5	3	2	0	0	0	0.027462	1	8282	8282		49.211	10.189	1	12264			44561	4689;15046	36862	36885	48041	48041					0.1368987276448479
PVQGQLVPL	9	Unmodified	_PVQGQLVPL_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-MSMS	OvCa9_classI_Rep2	2	475.7872619628906	2	475.78711	949.559667	-1.1235	-0.00053453	1.082	0.00051482	-0.041421	-1.9707E-05	475.7874263780674	139.39	1.0332	139.16	138.81	139.84	-0.22696					43	20	3	0	0	0	0.65476	1	13936	13936		25.45	2.4077	1	86387	+		44562	23052	36863	36886	48042	48042					0.08286948311229025
PVQHVGTLTI	10	Unmodified	_PVQHVGTLTI_					0	0	0			REV__nc|ENSG00000116161|Q9HB71-3|CACYBP	REV__nc|ENSG00000116161|Q9HB71-3|CACYBP	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.3123779296875	2	532.808574	1063.60259	1.7057	0.00090879	1.649	0.00087862	3.3547	0.0017874	532.8111888532716	118.69	0.18806	118.69	118.58	118.77	0					5	3	2	0	0	0	0.026994	1	13617	13617		25.574	0.12388	1	18530	+		44563	18287	36864	36887	48043	48043					0.07333718368658992
PVQIIPAS	8	Unmodified	_PVQIIPAS_					0	0	0		ENSG00000154727|ENST00000400075|GABPA;ENST00000419271.1_1_7:63353684-63354623:+|nuORF	ENSG00000154727|ENST00000400075|GABPA	ENSG00000154727|ENST00000400075|GABPA	MULTI-MSMS	OvCa9_classI_Rep2	2	412.74609375	2	412.747453	823.480354	0.75275	0.0003107	-3.7611	-0.0015524	-3.0083	-0.0012417	412.74581316945023	134.99	1.618	134.76	134.29	135.91	-0.22696					65	32	3	0	0	0	0.74971	1	13383	13383		26.796	5.0938	1	284470			44564	5749	36865	36888	48044	48044					0.06155301357091503
PVQIIPAS	8	Unmodified	_PVQIIPAS_					0	0	0		ENSG00000154727|ENST00000400075|GABPA;ENST00000419271.1_1_7:63353684-63354623:+|nuORF	ENSG00000154727|ENST00000400075|GABPA	ENSG00000154727|ENST00000400075|GABPA	MULTI-MSMS	OvCa9_classI_Rep3	3	412.7456359863281	2	412.747453	823.480354	-0.0041108	-1.6967E-06	-3.0137	-0.0012439	-3.0178	-0.0012456	412.74611275073886	135.39	1.6252	134.28	133.62	135.24	-1.1076					83	32	4	0	0	0	0.75915	1	10952	10952		20.482	0	1	589310			44565	5749	36865	36888	48045	48045					0.06155301357091503
PVQLDIKVD	9	Unmodified	_PVQLDIKVD_					0	0	0			REV__RTF1|p.D663H|1|0.42|ENSG00000137815|chr15:41480286-41480286|G/C|missense_variant	REV__RTF1|p.D663H|1|0.42|ENSG00000137815|chr15:41480286-41480286|G/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.3095703125	2	513.795132	1025.57571	-0.21487	-0.0001104	1.1903	0.00061156	0.97541	0.00050116	514.2989010931635	78.052	0.29295	75.235	75.116	75.409	-2.8165					7	5	2	0	0	0	0.027425	1	6273	6273		42.864	7.7122	1	26935	+		44566	19481	36866	36889	48046	48046					0.06394609757489889
PVQLIPTT	8	Unmodified	_PVQLIPTT_					0	0	0		nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5;ENST00000535530.5_1_12:23716331-23887638:-|nuORF;ENST00000536911.1_1_12:23757311-23887638:-|nuORF	nc|ENSG00000134532|P35711-4|SOX5	nc|ENSG00000134532|P35711-4|SOX5	MULTI-MSMS	OvCa9_classI_Rep3	3	434.75897216796875	2	434.760561	867.506569	-1.3377	-0.00058158	-1.6289	-0.00070818	-2.9666	-0.0012898	434.7597358333452	139.11	1.8707	138.05	137.63	139.51	-1.0595					91	37	4	0	0	0	0.75915	1	11435	11435		20.482	1.1219	1	610970			44567	4306	36867	36890	48047	48047					0.06751570528570028
PVQLLTIRVA	10	Unmodified	_PVQLLTIRVA_					0	0	0		nc|ENSG00000168936|A0AVI4-2|TMEM129;ENSG00000168936|ENST00000382936|TMEM129	nc|ENSG00000168936|A0AVI4-2|TMEM129	nc|ENSG00000168936|A0AVI4-2|TMEM129	MULTI-MSMS	OvCa9_classI_Rep3	3	555.3540649414062	2	555.355691	1108.69683	-7.0233	-0.0039004	3.381	0.0018777	-3.6422	-0.0020227	555.3574443782504	158.85	1.8694	157.58	157.26	159.13	-1.267					85	36	5	0	0	0	0.7759	1	13715	13715		21.96	1.013	1	417810			44568	6959	36868	36891	48048	48048					0.14682857190814502
PVQLTYDTSKL	11	Unmodified	_PVQLTYDTSKL_					0	0	0			REV__ENST00000222573.4_1_7:20449902-20450115:+|nuORF	REV__ENST00000222573.4_1_7:20449902-20450115:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	422.1868591308594	3	422.230966	1263.67107	-0.50705	-0.00021409	0.68954	0.00029114	0.18249	7.7052E-05	422.2312241967552	56.092	1.3678	52.797	52.464	53.832	-3.2944					70	26	4	0	0	0	0.025911	1	3645	3645		28.384	16.929	1	237790	+		44569	23750	36869	36892	48049	48049					0.04977918157851491
PVQLTYDTSKL	11	Unmodified	_PVQLTYDTSKL_					0	0	0			REV__ENST00000222573.4_1_7:20449902-20450115:+|nuORF	REV__ENST00000222573.4_1_7:20449902-20450115:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	422.230966	1263.67107	-0.82076	-0.00034655	1.0819	0.00045682	0.26116	0.00011027	422.2312870143456	55.497	1.3396	52.69	52.279	53.619	-2.8066	-0.053531	0.00029338	NaN	17.722	58	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114720	+		44570	23750	36869	36892							0.04977918157851491
PVQPRYHPT	9	Unmodified	_PVQPRYHPT_					0	0	0			REV__ENST00000492370.5_1_3:49724193-49724592:-|nuORF	REV__ENST00000492370.5_1_3:49724193-49724592:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.267822265625	2	547.790715	1093.56688	-0.3703	-0.00020284	-2.2785	-0.0012482	-2.6488	-0.001451	547.7891695354085	63.874	0.92276	60.399	60.251	61.173	-3.475					30	18	2	0	0	0	0.027462	1	4545	4545		27.882	4.3595	1	191940	+		44571	26691	36870	36893	48050	48050					0.02383680911657393
PVQPRYHPT	9	Unmodified	_PVQPRYHPT_					0	0	0			REV__ENST00000492370.5_1_3:49724193-49724592:-|nuORF	REV__ENST00000492370.5_1_3:49724193-49724592:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	547.790715	1093.56688	-1.698	-0.00093016	0.5568	0.00030501	-1.1412	-0.00062515	547.7909731119761	63.02	1.0494	60.276	59.899	60.949	-2.7444	-0.061283	0.00098221	NaN	35.618	35	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64780	+		44572	26691	36870	36893							0.02383680911657393
PVQQDLPLA	9	Unmodified	_PVQQDLPLA_					0	0	0		nc|ENSG00000129646|Q9H0J4-2|QRICH2;nc|ENSG00000129646|Q9H0J4|QRICH2;ENSG00000129646|ENST00000680821|QRICH2	nc|ENSG00000129646|Q9H0J4-2|QRICH2	nc|ENSG00000129646|Q9H0J4-2|QRICH2	MULTI-SECPEP	OvCa9_classI_Rep3	3	490.3362121582031	2	490.7742	979.533846	-1.5203	-0.0007461	-1.009	-0.00049522	-2.5293	-0.0012413	490.7756206714587	136.85	0.29482	135.76	135.56	135.86	-1.0858					7	5	2	0	0	0	0.027462	1	11120	11120		24.519	0	1	5771.3			44573	3939	36871	36894	48051	48051					0.04326054068951635
PVQRELLRRRY	11	Unmodified	_PVQRELLRRRY_					0	0	0		nc|ENSG00000004939|P02730-2|SLC4A1;ENSG00000004939|ENST00000262418|SLC4A1	nc|ENSG00000004939|P02730-2|SLC4A1	nc|ENSG00000004939|P02730-2|SLC4A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.2935791015625	3	495.963548	1484.86881	-6.4738	-0.0032108	-3.4494	-0.0017108	-9.9232	-0.0049216	495.96176021125257	160.81	2.4584	159.2	158.19	160.65	-1.6101					153	57	4	0	0	0	0.72507	1	15865	15865		14.694	1.7362	1	42976			44574	838	36872	36895	48052	48052					0.14577401931046552
PVQTPQLISVI	11	Unmodified	_PVQTPQLISVI_					0	0	0			REV__ENST00000523752.5_1_8:22880186-22885396:-|nuORF	REV__ENST00000523752.5_1_8:22880186-22885396:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8562622070312	2	597.858264	1193.70197	-1.5377	-0.00091935	-1.5701	-0.00093869	-3.1078	-0.001858	597.8570606153338	148.28	4.8676	146.85	145.38	150.25	-1.435					291	102	5	0	0	0	0.68757	1	14666	14666		33.922	0	1	767860	+		44575	18520	36873	36896	48053	48053					0.11287116262769814
PVQYLKLF	8	Unmodified	_PVQYLKLF_					0	0	0			REV__nc|ENSG00000143473|O95259-2|KCNH1	REV__nc|ENSG00000143473|O95259-2|KCNH1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.7784423828125	2	504.299853	1006.58515	-0.57567	-0.00029031	-3.4567	-0.0017432	-4.0324	-0.0020335	504.2973258297181	21.256	0.57404	19.918	19.595	20.169	-1.3386					20	11	3	0	0	0	0.028476	1	172	172		14.664	0	1	14994	+		44576	19843	36874	36897	48054	48054					0.0821242283365109
PVRALLRALE	10	Unmodified	_PVRALLRALE_					0	0	0			REV__ENSG00000185933|ENST00000329905|CALHM1	REV__ENSG00000185933|ENST00000329905|CALHM1	MULTI-SECPEP	OvCa9_classI_Rep3	3	569.834228515625	2	569.358765	1136.70298	-0.697	-0.00039684	3.137	0.0017861	2.44	0.0013893	569.8616866813088	99.814	0.26393	98.129	97.932	98.196	-1.685					5	4	2	0	0	0	0.026994	1	6730	6730		25.574	9.1009	1	19184	+		44577	22546	36875	36898	48055	48055					0.14009375422347148
PVRGAVAAPLE	11	Unmodified	_PVRGAVAAPLE_					0	0	0			REV__ENST00000433688.2_2_11:63531028-63531832:-|nuORF	REV__ENST00000433688.2_2_11:63531028-63531832:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	540.31494140625	2	540.314023	1078.61349	-0.0032497	-1.7559E-06	-0.40502	-0.00021884	-0.40827	-0.00022059	540.3136598498987	87.836	1.514	85.659	85.19	86.704	-2.1768					78	29	5	0	0	0	0.3578	1	5300	5300		64.207	8.7031	1	618000	+		44578	25752	36876	36899	48056	48056					0.0773312074295518
PVRGGRLN	8	Unmodified	_PVRGGRLN_					0	0	0			REV__ENST00000575985.1_1_17:4890483-4890591:+|nuORF	REV__ENST00000575985.1_1_17:4890483-4890591:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	434.7588806152344	2	434.759218	867.503883	-0.54476	-0.00023684	0.73073	0.00031769	0.18597	8.0851E-05	434.7594502813862	138.35	2.0585	138.12	137.54	139.6	-0.22697					104	41	4	0	0	0	0.73288	1	13802	13802		35.201	3.2459	1	279250	+		44579	27779	36877	36900	48057	48057					0.06483159914273529
PVRGLVTIN	9	Unmodified	_PVRGLVTIN_					0	0	0		CON__ENSEMBL:ENSBTAP00000037665	CON__ENSEMBL:ENSBTAP00000037665	CON__ENSEMBL:ENSBTAP00000037665	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.260986328125	2	484.798009	967.581465	1.2877	0.00062425	-1.9597	-0.00095007	-0.67207	-0.00032582	484.7968738551234	86.153	0.79902	83.506	82.993	83.792	-2.6463					19	15	2	0	0	0	0.027462	1	7306	7306		29.15	17.639	1	18521		+	44580	609	36878	36901	48058	48058					0.09637753059803345
PVRGVPDR	8	Unmodified	_PVRGVPDR_					0	0	0		ENST00000481771.5_1_1:155181647-155183486:+|nuORF	ENST00000481771.5_1_1:155181647-155183486:+|nuORF	ENST00000481771.5_1_1:155181647-155183486:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	448.2583312988281	2	448.259051	894.503549	0.91253	0.00040905	-0.89413	-0.0004008	0.018403	8.2495E-06	448.25856617736815	142.24	1.5311	142.01	141.52	143.05	-0.22696					82	30	4	0	0	0	0.75723	1	14260	14260		23.042	0	1	131560			44581	12551	36879	36902	48059	48059					0.05207740194418875
PVRHRVQEI	9	Unmodified	_PVRHRVQEI_					0	0	0			REV__nc|ENSG00000177058|Q8NBW4-2|SLC38A9	REV__nc|ENSG00000177058|Q8NBW4-2|SLC38A9	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3294067382812	2	567.330539	1132.64652	-1.6483	-0.00093515	0.20487	0.00011623	-1.4435	-0.00081891	567.3305014697371	141.66	3.9446	141.43	139.35	143.3	-0.22697					200	79	3	0	0	0	0.68424	1	14183	14183		21.96	0	1	83872	+		44582	29022	36880	36903	48060	48060					0.0855074758567298
PVRLDLPPE	9	Unmodified	_PVRLDLPPE_					0	0	0		ENST00000466133.1_1_3:159818637-159819075:+|nuORF;BRD7|p.I185Sfs*9|1|0.15|ENSG00000166164|chr16:50350062-50350062|C/-|frameshift_variant;ENSG00000166164|ENST00000394688|BRD7;nc|ENSG00000166164|Q9NPI1-2|BRD7	ENST00000466133.1_1_3:159818637-159819075:+|nuORF	ENST00000466133.1_1_3:159818637-159819075:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	518.2968139648438	2	518.295299	1034.57605	1.5798	0.00081879	0.10664	5.5269E-05	1.6864	0.00087406	518.2953777418106	91.393	1.3696	91.393	91.016	92.385	0					87	32	4	0	0	0	0.14998	1	9864	9864		84.916	15.288	1	13699000			44583	159	36881	36904	48061	48061					0.06014029477319127
PVRLLPSARW	10	Unmodified	_PVRLLPSARW_					0	0	0		ENST00000305097.5_1_3:152553313-152553556:+|nuORF	ENST00000305097.5_1_3:152553313-152553556:+|nuORF	ENST00000305097.5_1_3:152553313-152553556:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8569946289062	2	597.858932	1193.70331	-0.38237	-0.0002286	-3.9169	-0.0023418	-4.2993	-0.0025704	597.8564103488146	145.14	4.0194	143.71	141.51	145.53	-1.4357					229	77	4	0	0	0	0.75313	1	14178	14178		24.519	0.99649	1	217250			44584	10231	36882	36905	48062	48062					0.11420795142180395
PVRLQECIEL	10	Unmodified	_PVRLQECIEL_					0	0	0		ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11	ENST00000469080.5_1_X:47092634-47106681:+|nuORF	ENST00000469080.5_1_X:47092634-47106681:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	600.3245849609375	2	600.326273	1198.63799	1.2087	0.00072562	-4.1162	-0.002471	-2.9075	-0.0017454	600.3236393872913	156.48	2.3289	156.48	156.04	158.37	0					141	46	4	0	0	0	0.64697	1	18313	18313		36.447	2.5251	1	3212700			44585	2230	36883	36906	48063	48063					0.04662012834160123
PVRLSHSLC	9	Unmodified	_PVRLSHSLC_					0	0	0		ENST00000367657.7_1_1:176853624-176857243:-|nuORF	ENST00000367657.7_1_1:176853624-176857243:-|nuORF	ENST00000367657.7_1_1:176853624-176857243:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	506.2728576660156	2	506.273844	1010.53313	1.7132	0.00086734	-1.7996	-0.00091107	-0.086391	-4.3737E-05	506.2727467608177	54.771	2.6321	51.6	50.779	53.411	-3.1715					173	88	3	0	0	0	0.46377	1	1410	1410		45.952	0	1	154000			44586	10853	36884	36907	48064	48064					0.028289361482507047
PVRLVRFEA	9	Unmodified	_PVRLVRFEA_					0	0	0			REV__nc|ENSG00000119699|P10600-2|TGFB3	REV__nc|ENSG00000119699|P10600-2|TGFB3	MULTI-SECPEP	OvCa9_classI_Rep3	3	543.3023681640625	2	543.824558	1085.63456	1.4394	0.0007828	1.6628	0.00090425	3.1022	0.0016871	543.8243416826068	123.11	0.31534	122.07	121.84	122.15	-1.0377					9	5	2	0	0	0	0.027462	1	9476	9476		30.504	0	1	7200.5	+		44587	18462	36885	36908	48065	48065					0.09517130842482402
PVRNTLHSIRA	11	Unmodified	_PVRNTLHSIRA_					0	0	0			REV__ENSG00000118985|ENST00000237853|ELL2	REV__ENSG00000118985|ENST00000237853|ELL2	MULTI-MSMS	OvCa9_classI_Rep3	3	632.3621215820312	2	632.367653	1262.72075	-6.4512	-0.0040795	-3.3593	-0.0021243	-9.8105	-0.0062039	632.3653623166105	163.09	0.65668	161.69	161.48	162.14	-1.3925					38	14	3	0	0	0	0.72064	1	14211	14211		22.58	3.4761	1	85467	+		44588	18423	36886	36909	48066	48066					0.09990090677183616
PVRQEIVKNR	10	Unmodified	_PVRQEIVKNR_					0	0	0			REV__ENSG00000064703|ENST00000369702|DDX20	REV__ENSG00000064703|ENST00000369702|DDX20	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8709106445312	2	619.870028	1237.7255	-3.1194	-0.0019336	2.0434	0.0012667	-1.076	-0.00066696	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.7759	1	15257	15257		21.96	1.013	1	806750	+		44589	16775	36887	36910	48067	48067					0.11614974819940471
PVRRNASI	8	Unmodified	_PVRRNASI_					0	0	0		nc|ENSG00000117600|Q7Z2D5-3|PLPPR4;ENSG00000117600|ENST00000370185|PLPPR4;nc|ENSG00000117600|Q7Z2D5|PLPPR4;nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	nc|ENSG00000117600|Q7Z2D5-3|PLPPR4	nc|ENSG00000117600|Q7Z2D5-3|PLPPR4	MULTI-MSMS	OvCa9_classI_Rep2	2	456.7724304199219	2	456.772326	911.530098	-0.55209	-0.00025218	0.40157	0.00018343	-0.15052	-6.8753E-05	456.77237766888294	142.31	1.8774	142.08	141.37	143.25	-0.22697					97	37	4	0	0	0	0.6962	1	14282	14282		44.117	12.162	1	225920			44590	3266	36888	36911	48068	48068					0.07079429085752054
PVRRNASI	8	Unmodified	_PVRRNASI_					0	0	0		nc|ENSG00000117600|Q7Z2D5-3|PLPPR4;ENSG00000117600|ENST00000370185|PLPPR4;nc|ENSG00000117600|Q7Z2D5|PLPPR4;nc|ENSG00000117600|Q7Z2D5-2|PLPPR4	nc|ENSG00000117600|Q7Z2D5-3|PLPPR4	nc|ENSG00000117600|Q7Z2D5-3|PLPPR4	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.7725830078125	2	456.772326	911.530098	0.021393	9.7715E-06	-0.016883	-7.7118E-06	0.0045094	2.0598E-06	456.772221860438	143.17	2.3082	141.72	140.94	143.25	-1.4427					127	44	4	0	0	0	0.74229	1	14020	14020		30.504	0	1	669650			44591	3266	36888	36911	48069	48069					0.07079429085752054
PVRSCDNGH	9	Unmodified	_PVRSCDNGH_					0	0	0		nc|ENSG00000114423|Q13191-3|CBLB;nc|ENSG00000114423|Q13191-2|CBLB;ENSG00000114423|ENST00000394030|CBLB	nc|ENSG00000114423|Q13191-3|CBLB	nc|ENSG00000114423|Q13191-3|CBLB	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.8008117675781	2	492.719433	983.424312	-0.33551	-0.00016531	4.3374	0.0021371	4.0019	0.0019718	492.7213915149439	56.041	1.4854	53.237	52.731	54.216	-2.804					65	29	3	0	0	0	0.027462	1	4001	4001		42.396	30.885	1	135210			44592	3019	36889	36912	48070	48070					-0.06806274822031355
PVRSFLQPPKP	11	Unmodified	_PVRSFLQPPKP_					0	0	0		nc|ENSG00000139737|Q8ND83-3|SLAIN1;nc|ENSG00000139737|Q8ND83-2|SLAIN1;nc|ENSG00000139737|Q8ND83-4|SLAIN1;nc|ENSG00000139737|Q8ND83|SLAIN1;ENSG00000139737|ENST00000418532|SLAIN1	nc|ENSG00000139737|Q8ND83-3|SLAIN1	nc|ENSG00000139737|Q8ND83-3|SLAIN1	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3688354492188	2	633.371872	1264.72919	-3.894	-0.0024663	-0.37753	-0.00023912	-4.2715	-0.0027055	633.3715080583703	149.82	2.9263	149.6	148.42	151.35	-0.22696					170	58	4	0	0	0	0.72485	1	15191	15191		17.468	1.4612	1	116220			44593	4803	36890	36913	48071	48071					0.10741644593804267
PVSEIIESGP	10	Unmodified	_PVSEIIESGP_					0	0	0			REV__ENST00000444273.6_1_6:56954967-57015704:+|nuORF;REV__ENSG00000168116|ENST00000370733|KIAA1586	REV__ENSG00000168116|ENST00000370733|KIAA1586	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.2681274414062	2	514.268947	1026.52334	0.042016	2.1607E-05	-0.16847	-8.664E-05	-0.12646	-6.5033E-05	514.2687243356565	122.41	0.89293	121.05	120.81	121.7	-1.3666					36	17	3	0	0	0	0.65434	1	11551	11551		35.618	1.4457	1	80425	+		44594	21347;18083	36891	36914	48072	48072					0.011140266238726326
PVSEPSTEP	9	Unmodified	_PVSEPSTEP_					0	0	0			REV__ENSG00000138449|ENST00000261024|SLC40A1	REV__ENSG00000138449|ENST00000261024|SLC40A1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.7530517578125	2	471.724372	941.434192	0.016922	7.9825E-06	-3.2001	-0.0015095	-3.1831	-0.0015016	471.7217312970399	51.243	0.35273	48.07	47.821	48.174	-3.1734					10	6	2	0	0	0	0.027449	1	2975	2975		50.025	2.1089	1	9894.7	+		44595	19541	36892	36915	48073	48073					-0.038868083356533134
PVSGPKLTYK	10	Unmodified	_PVSGPKLTYK_					0	0	0			REV__tr|A0A7D6ZYR3|A0A7D6ZYR3_9CLOTTransglutaminasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17350PE=4SV=1	REV__tr|A0A7D6ZYR3|A0A7D6ZYR3_9CLOTTransglutaminasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17350PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3154296875	2	545.318774	1088.623	-1.9768	-0.001078	-1.9702	-0.0010744	-3.947	-0.0021524	545.3174971514211	139.12	3.9663	138.06	135.98	139.95	-1.0595					186	80	3	0	0	0	0.71173	1	11342	11342		29.17	3.596	1	94142	+		44596	32386	36893	36916	48074	48074					0.08222889028456848
PVSHFPKEKLL	11	Unmodified	_PVSHFPKEKLL_					0	0	0			REV__CES3|p.S447Ifs*13|1|0.06|ENSG00000172828|chr16:66972402-66972403|-/A|frameshift_variant	REV__CES3|p.S447Ifs*13|1|0.06|ENSG00000172828|chr16:66972402-66972403|-/A|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	647.831298828125	2	647.87953	1293.74451	-0.53576	-0.00034711	-1.6028	-0.0010384	-2.1386	-0.0013855	647.8783259412968	59.552	0.27389	59.552	59.452	59.726	0					8	6	2	0	0	0	0.025638	1	5152	5152		37.812	11.119	1	353550	+		44597	15781	36894	36917	48075	48075					0.10938511391009342
PVSKEPLHIS	10	Unmodified	_PVSKEPLHIS_					0	0	0			REV__nc|ENSG00000161405|Q9UKT9-16|IKZF3	REV__nc|ENSG00000161405|Q9UKT9-16|IKZF3	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.3004760742188	2	553.813856	1105.61316	0.53159	0.0002944	3.9385	0.0021812	4.4701	0.0024756	553.815518681177	161.23	0.3031	161.23	161.11	161.41	0					9	5	2	0	0	0	0.027056	1	18895	18895		27.882	3.6795	1	22475	+		44598	20696	36895	36918	48076	48076					0.06457701023100526
PVSKPSARVK	10	Unmodified	_PVSKPSARVK_					0	0	0		ENST00000313708.10_1_5:158223420-158250186:-|nuORF	ENST00000313708.10_1_5:158223420-158250186:-|nuORF	ENST00000313708.10_1_5:158223420-158250186:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.848876953125	2	534.82984	1067.64513	2.4438	0.001307	-1.5311	-0.0008189	0.91266	0.00048812	534.8295980606782	75.05	0.20742	75.05	74.92	75.128	0					8	4	2	0	0	0	0.026956	1	7462	7462		26.693	0	1	141030			44599	10315	36896	36919	48077	48077					0.11401113496890503
PVSLAKVLKT	10	Unmodified	_PVSLAKVLKT_					0	0	0		ENSG00000173894|ENST00000310942|CBX2	ENSG00000173894|ENST00000310942|CBX2	ENSG00000173894|ENST00000310942|CBX2	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3178100585938	2	528.344792	1054.67503	-1.069	-0.00056477	-1.4726	-0.00077803	-2.5415	-0.0013428	528.3443865745423	65.958	0.3456	65.958	65.79	66.136	0					19	8	3	0	0	0	0.026915	1	6070	6070		44.117	18.543	1	838230			44600	7424	36897	36920	48078	48078					0.14988052442231492
PVSLARRN	8	Unmodified	_PVSLARRN_					0	0	0		ENSG00000142149|ENST00000270112|HUNK	ENSG00000142149|ENST00000270112|HUNK	ENSG00000142149|ENST00000270112|HUNK	MULTI-MSMS	OvCa9_classI_Rep2	2	456.7723388671875	2	456.772326	911.530098	-0.55209	-0.00025218	0.40157	0.00018343	-0.15052	-6.8753E-05	456.77237766888294	142.31	1.8774	142.08	141.37	143.25	-0.22697					97	37	4	0	0	0	0.74971	1	14246	14246		26.796	3.7536	1	225920			44601	4955	36898	36921	48079	48079					0.07079429085752054
PVSLATRVPIP	11	Unmodified	_PVSLATRVPIP_					0	0	0		ENST00000498666.5_1_21:46313282-46313576:-|nuORF	ENST00000498666.5_1_21:46313282-46313576:-|nuORF	ENST00000498666.5_1_21:46313282-46313576:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.3494262695312	2	575.353148	1148.69174	-5.9938	-0.0034485	2.2431	0.0012906	-3.7507	-0.002158	575.3543564636343	157.84	0.77951	156.29	156.09	156.87	-1.545					44	22	3	0	0	0	0.71498	1	15600	15600		24.519	0.99649	1	71149			44602	12830	36899	36922	48080	48080					0.12334553328196307
PVSLATRVPIP	11	Unmodified	_PVSLATRVPIP_					0	0	0		ENST00000498666.5_1_21:46313282-46313576:-|nuORF	ENST00000498666.5_1_21:46313282-46313576:-|nuORF	ENST00000498666.5_1_21:46313282-46313576:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	575.353148	1148.69174	-6.8783	-0.0039574	3.36	0.0019332	-3.5182	-0.0020242	575.3550061972999	157.46	0.52461	156.29	156.07	156.59	-1.1707	-0.0024947	0.0010051	NaN	24.519	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37098			44603	12830	36899	36922							0.12334553328196307
PVSLCVQSQ	9	Unmodified	_PVSLCVQSQ_					0	0	0			REV__ENST00000607031.1_1_1:2317244-2317385:-|nuORF	REV__ENST00000607031.1_1_1:2317244-2317385:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.2621765136719	2	480.744585	959.474617	-0.52544	-0.0002526	-2.1651	-0.0010409	-2.6906	-0.0012935	480.7429968864393	46.502	0.98326	43.429	43.03	44.014	-3.0724					42	18	3	0	0	0	0.027462	1	2486	2486		27.882	10.517	1	71044	+		44604	28081	36900	36923	48081	48081					-0.006741652168670953
PVSLIKEKYT	10	Unmodified	_PVSLIKEKYT_					0	0	0		tr|A0A7D7A0V3|A0A7D7A0V3_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11265PE=4SV=1	tr|A0A7D7A0V3|A0A7D7A0V3_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11265PE=4SV=1	tr|A0A7D7A0V3|A0A7D7A0V3_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11265PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3428955078125	2	589.344989	1176.67542	-5.1334	-0.0030254	1.6192	0.00095427	-3.5142	-0.0020711	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.59703	2	12366	12366;12594		42.396	16.822	1	589610			44605	36010	36901	36924	48082;48083	48082					0.09415427371436635
PVSLRKPR	8	Unmodified	_PVSLRKPR_					0	0	0		nc|ENSG00000092200|Q96KN7-3|RPGRIP1;nc|ENSG00000092200|Q96KN7-2|RPGRIP1;nc|ENSG00000092200|Q96KN7-5|RPGRIP1;ENSG00000092200|ENST00000400017|RPGRIP1;nc|ENSG00000092200|Q96KN7-4|RPGRIP1	nc|ENSG00000092200|Q96KN7-3|RPGRIP1	nc|ENSG00000092200|Q96KN7-3|RPGRIP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.8058166503906	2	476.806168	951.597784	-0.54019	-0.00025756	-0.3732	-0.00017794	-0.91338	-0.00043551	476.80595009891266	41.29	1.8569	38.309	37.918	39.775	-2.9804					79	35	3	0	0	0	0.66704	1	1849	1849		50.025	14.824	1	1153600			44606	1890	36902	36925	48084	48084					0.12004879016558334
PVSPEVRSTEP	11	Unmodified	_PVSPEVRSTEP_					0	0	0		SORL1-CEP164|1|fusion;nc|ENSG00000110274|Q9UPV0-2|CEP164;ENSG00000110274|ENST00000278935|CEP164	SORL1-CEP164|1|fusion	SORL1-CEP164|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	598.3524780273438	2	599.309135	1196.60372	1.1461	0.00068684	2.1223	0.0012719	3.2684	0.0019588	599.3104193413044	114.27	1.9324	112.82	112.34	114.27	-1.4461					90	37	5	0	0	0	0.025457	1	10648	10648		52.937	10.462	1	144050			44607	32844	36903	36926	48085	48085					0.013278879468998639
PVSPLIRTY	9	Unmodified	_PVSPLIRTY_					0	0	0			REV__nc|ENSG00000095303|P23219-4|PTGS1	REV__nc|ENSG00000095303|P23219-4|PTGS1	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3032836914062	2	523.305667	1044.59678	-2.1227	-0.0011108	-1.8084	-0.00094634	-3.9311	-0.0020572	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.61208	1	11346	11346		30.504	2.6214	1	183010	+		44608	17286	36904	36927	48086	48086					0.0762661985700106
PVSQDFLLH	9	Unmodified	_PVSQDFLLH_					0	0	0		ENSG00000125386|ENST00000637812|FAM193A;FAM193A|p.P278Sfs*16|1|0.06|ENSG00000125386|chr4:2660013-2660014|-/T|frameshift_variant;FAM193A|p.T577Cfs*75|1|0.32|ENSG00000125386|chr4:2690768-2690769|-/TGTGCAGGCTGTTGCACTGCGCC|frameshift_variant	ENSG00000125386|ENST00000637812|FAM193A	ENSG00000125386|ENST00000637812|FAM193A	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3177490234375	2	528.279649	1054.54475	-0.22872	-0.00012083	-2.9419	-0.0015541	-3.1706	-0.001675	528.2780895341185	67.521	0.42433	67.521	67.298	67.723	0					17	10	2	0	0	0	0.027462	1	6337	6337		18.324	0	1	325820			44609	3705	36905	36928	48087	48087					0.0196545644323578
PVSQRSTL	8	Unmodified	_PVSQRSTL_					0	0	0		LY9|p.S233T|1|0.17|ENSG00000122224|chr1:160813878-160813878|T/A|missense_variant	LY9|p.S233T|1|0.17|ENSG00000122224|chr1:160813878-160813878|T/A|missense_variant	LY9|p.S233T|1|0.17|ENSG00000122224|chr1:160813878-160813878|T/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	444.2510986328125	2	444.250892	886.48723	1.3499	0.00059967	-1.3711	-0.00060911	-0.021233	-9.4329E-06	444.2501838124347	46.728	1.6349	44.018	43.696	45.331	-2.7097					87	32	4	0	0	0	0.36941	2	2826	2820;2826		94.006	3.2298	1	733010			44610	14810	36906	36929	48088;48089	48089					0.03944614237684618
PVSQRSTL	8	Unmodified	_PVSQRSTL_					0	0	0		LY9|p.S233T|1|0.17|ENSG00000122224|chr1:160813878-160813878|T/A|missense_variant	LY9|p.S233T|1|0.17|ENSG00000122224|chr1:160813878-160813878|T/A|missense_variant	LY9|p.S233T|1|0.17|ENSG00000122224|chr1:160813878-160813878|T/A|missense_variant	MSMS	OvCa9_classI_Rep4_	4	444.251953125	2	444.250892	886.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.822	1	43.749	43.249	44.249	-3.0724								0	0	0	0.0057598	1	2479	2479		143.02	4.1939	1				44611	14810	36906	36929	48090	48090					0.03944614237684618
PVSTLLLLL	9	Unmodified	_PVSTLLLLL_					0	0	0			REV__ENST00000485071.2_1_7:100172857-100173304:-|nuORF	REV__ENST00000485071.2_1_7:100172857-100173304:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	484.8216247558594	2	484.823161	967.631769	-0.85595	-0.00041498	-2.3851	-0.0011564	-3.2411	-0.0015714	484.82179797945304	36.462	0.44946	36.462	36.257	36.707	0					21	9	3	0	0	0	0.58665	1	1919	1919		33.516	5.2613	1	487220	+		44612	26557	36907	36930	48091	48091					0.1466586266496961
PVTASFRPTL	10	Unmodified	_PVTASFRPTL_					0	0	0			REV__ENSG00000115760|ENST00000421745|BIRC6	REV__ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.8091430664062	2	544.808574	1087.60259	-0.64926	-0.00035372	-1.2496	-0.00068079	-1.8989	-0.0010345	544.8076339848565	79.133	2.3917	76.382	75.426	77.817	-2.7514					108	49	3	0	0	0	0.58067	1	6440	6440		44.377	0	1	2689700	+		44613	18266	36908	36931	48092	48092					0.062297183686723656
PVTEEFLGR	9	Unmodified	_PVTEEFLGR_					0	0	0			REV__chr2:73946888-73957125|97|13.43|0.28|5.57|+|2|None,DGUOK|1	REV__chr2:73946888-73957125|97|13.43|0.28|5.57|+|2|None,DGUOK|1	MULTI-MSMS	OvCa9_classI_Rep3	3	524.2789916992188	2	524.277106	1046.53966	1.2201	0.00063968	1.7979	0.0009426	3.018	0.0015823	524.2778574863617	62.52	2.1768	59.486	58.872	61.049	-3.0339					76	45	2	0	0	0	0.48324	1	2291	2291		44.117	3.5442	1	81064	+		44614	16007	36909	36932	48093	48093					0.01825152580613576
PVTHLPVHGH	10	Unmodified	_PVTHLPVHGH_					0	0	0			REV__FAM193A|p.T577Cfs*75|1|0.32|ENSG00000125386|chr4:2690768-2690769|-/TGTGCAGGCTGTTGCACTGCGCC|frameshift_variant	REV__FAM193A|p.T577Cfs*75|1|0.32|ENSG00000125386|chr4:2690768-2690769|-/TGTGCAGGCTGTTGCACTGCGCC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.7461547851562	2	547.298707	1092.58286	-1.416	-0.00077497	1.3716	0.00075067	-0.044389	-2.4294E-05	547.2994791961065	106.71	0.78899	104.83	104.64	105.43	-1.8785					20	14	2	0	0	0	0.026669	1	9741	9741		30.504	0.18592	1	34563	+		44615	18722	36910	36933	48094	48094					0.04027387148562411
PVTHLPVHGH	10	Unmodified	_PVTHLPVHGH_					0	0	0			REV__FAM193A|p.T577Cfs*75|1|0.32|ENSG00000125386|chr4:2690768-2690769|-/TGTGCAGGCTGTTGCACTGCGCC|frameshift_variant	REV__FAM193A|p.T577Cfs*75|1|0.32|ENSG00000125386|chr4:2690768-2690769|-/TGTGCAGGCTGTTGCACTGCGCC|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	547.298707	1092.58286	-0.34051	-0.00018636	0.29235	0.00016001	-0.048153	-2.6354E-05	547.2988296228526	105.31	0.6469	104.87	104.6	105.25	-0.43642	0.063205	-0.00063729	NaN	30.504	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36401	+		44616	18722	36910	36933							0.04027387148562411
PVTISLPKP	9	Unmodified	_PVTISLPKP_					0	0	0		ENSG00000216588|ENST00000402988|IGSF23	ENSG00000216588|ENST00000402988|IGSF23	ENSG00000216588|ENST00000402988|IGSF23	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.2619323730469	2	476.29731	950.580068	0.46937	0.00022356	-1.4805	-0.00070517	-1.0111	-0.00048161	476.2964962332114	47.446	0.49899	44.339	44.185	44.684	-3.1077					13	9	2	0	0	0	0.027462	1	2535	2535		16.473	8.7829	1	12859			44617	9214	36911	36934	48095	48095					0.10280118971047614
PVTLRRWL	8	Unmodified	_PVTLRRWL_					0	0	0		nc|ENSG00000160191|O76083-10|PDE9A;nc|ENSG00000160191|O76083-7|PDE9A;nc|ENSG00000160191|O76083-15|PDE9A;nc|ENSG00000160191|O76083-14|PDE9A;nc|ENSG00000160191|O76083-5|PDE9A;nc|ENSG00000160191|O76083-2|PDE9A;nc|ENSG00000160191|O76083-13|PDE9A;nc|ENSG00000160191|O76083-8|PDE9A;nc|ENSG00000160191|O76083-6|PDE9A;nc|ENSG00000160191|O76083-12|PDE9A;nc|ENSG00000160191|O76083-16|PDE9A;ENST00000470987.5_1_21:44117526-44195400:+|nuORF;nc|ENSG00000160191|O76083-3|PDE9A;nc|ENSG00000160191|O76083-4|PDE9A;nc|ENSG00000160191|O76083-11|PDE9A;nc|ENSG00000160191|O76083-9|PDE9A;ENST00000489319.5_1_21:44178904-44195400:+|nuORF;ENSG00000160191|ENST00000291539|PDE9A	nc|ENSG00000160191|O76083-10|PDE9A	nc|ENSG00000160191|O76083-10|PDE9A	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.8081665039062	2	520.821818	1039.62908	-0.81124	-0.00042251	-1.2022	-0.00062615	-2.0135	-0.0010487	520.8213798874865	117.31	0.19777	117.19	117.06	117.26	-0.12869					6	3	2	0	0	0	0.028476	1	11224	11224		42.474	8.3019	1	5178.7			44618	6043	36912	36935	48096	48096					0.11085452050656386
PVTTIVVE	8	Unmodified	_PVTTIVVE_					0	0	0			REV__ENSG00000166292|ENST00000424486|TMEM100	REV__ENSG00000166292|ENST00000424486|TMEM100	MULTI-MSMS	OvCa99_classI_Rep5	1	429.25408935546875	2	429.252569	856.490584	-0.68926	-0.00029587	2.0146	0.00086478	1.3254	0.00056892	429.2532919539158	65.909	0.99165	65.909	65.748	66.739	0					46	24	2	0	0	0	0.73288	1	6085	6085		35.201	0	1	1555500	+		44619	21174	36913	36936	48097	48097					0.05659864291658323
PVVEEAPKN	9	Unmodified	_PVVEEAPKN_					0	0	0			REV__ENSG00000116906|ENST00000366647|GNPAT	REV__ENSG00000116906|ENST00000366647|GNPAT	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.27471923828125	2	491.763832	981.513111	1.4171	0.00069687	1.0085	0.00049593	2.4255	0.0011928	491.76410684155206	92.353	0.5029	92.353	92.174	92.677	0					22	11	3	0	0	0	0.027462	1	10020	10020		37.159	18.835	1	749880	+		44620	18326	36914	36937	48098	48098					0.02161463689287757
PVVEGAKQL	9	Unmodified	_PVVEGAKQL_					0	0	0			REV__ENSG00000174917|ENST00000309324|MICOS13	REV__ENSG00000174917|ENST00000309324|MICOS13	MSMS	OvCa99_classI_Rep5	1	470.7788391113281	2	470.776742	939.538931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	74.261	1	74.261	73.761	74.761	0								0	0	0	0.17317	1	7334	7334		44.117	1.7207	1		+		44621	21859	36915	36938	48099	48099					0.0667435793156983
PVVEIILIV	9	Unmodified	_PVVEIILIV_					0	0	0		ENST00000456360.5_1_Y:23556925-23559248:-|nuORF	ENST00000456360.5_1_Y:23556925-23559248:-|nuORF	ENST00000456360.5_1_Y:23556925-23559248:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.8306884765625	2	497.830986	993.647419	-0.38661	-0.00019247	-2.7414	-0.0013648	-3.128	-0.0015572	497.8295675245135	90.817	2.34	88.242	87.904	90.244	-2.575					125	45	4	0	0	0	0.57242	1	7888	7888		35.201	3.2459	1	856980			44622	12110	36916	36939	48100	48100					0.15034149182019974
PVVGKPVRERE	11	Unmodified	_PVVGKPVRERE_					0	0	0			REV__ENST00000528947.5_2_11:7535033-7535279:+|nuORF	REV__ENST00000528947.5_2_11:7535033-7535279:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3690185546875	2	633.369861	1264.72517	-4.8824	-0.0030923	3.9881	0.002526	-0.89421	-0.00056637	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.71498	1	12983	12983		24.519	5.4157	1	765700	+		44623	27181	36917	36940	48101	48101					0.10339555100085818
PVVGKPVRERE	11	Unmodified	_PVVGKPVRERE_					0	0	0			REV__ENST00000528947.5_2_11:7535033-7535279:+|nuORF	REV__ENST00000528947.5_2_11:7535033-7535279:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.3707275390625	2	633.369861	1264.72517	-3.7067	-0.0023477	2.7994	0.0017731	-0.90726	-0.00057463	633.3714685413702	153.42	3.7144	151.96	150.68	154.4	-1.4516					273	94	4	0	0	0	0.71789	1	15217	15217		23.523	6.1577	1	395790	+		44624	27181	36917	36940	48102	48102					0.10339555100085818
PVVGVIPHF	9	Unmodified	_PVVGVIPHF_					0	0	0		tr|A0A7D6ZHW2|A0A7D6ZHW2_9CLOTCobyricacidsynthaseOS=ClostridiumintestinaleOX=36845GN=cobQPE=3SV=1	tr|A0A7D6ZHW2|A0A7D6ZHW2_9CLOTCobyricacidsynthaseOS=ClostridiumintestinaleOX=36845GN=cobQPE=3SV=1	tr|A0A7D6ZHW2|A0A7D6ZHW2_9CLOTCobyricacidsynthaseOS=ClostridiumintestinaleOX=36845GN=cobQPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	482.7846984863281	2	482.78437	963.554188	-1.6052	-0.00077495	1.3983	0.00067509	-0.20683	-9.9855E-05	482.78488077781606	119.78	1.8256	119.61	119.25	121.08	-0.17138					103	36	4	0	0	0	0.61768	1	11568	11568		29.842	0	1	403680			44625	35593	36918	36941	48103	48103					0.07095269519425074
PVVILSKAAYS	11	Unmodified	_PVVILSKAAYS_					0	0	0		nc|ENSG00000141449|Q9C091-3|GREB1L;ENSG00000141449|ENST00000424526|GREB1L;ENST00000578955.1_1_18:19057140-19088617:+|nuORF	nc|ENSG00000141449|Q9C091-3|GREB1L	nc|ENSG00000141449|Q9C091-3|GREB1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.7447509765625	2	574.339707	1146.66486	-0.56963	-0.00032716	-1.2135	-0.00069699	-1.7832	-0.0010241	574.3392510805205	41.357	0.48949	41.357	41.104	41.594	0					16	10	3	0	0	0	0.025958	1	2579	2579		21.686	0	1	57297			44626	4915	36919	36942	48104	48104					0.09739444716979051
PVVIPMKKR	9	Unmodified	_PVVIPMKKR_					0	0	0		nc|ENSG00000137337|Q14676-4|MDC1;nc|ENSG00000137337|Q14676-3|MDC1;nc|ENSG00000137337|Q14676-2|MDC1;ENSG00000137337|ENST00000376406|MDC1	nc|ENSG00000137337|Q14676-4|MDC1	nc|ENSG00000137337|Q14676-4|MDC1	MULTI-MSMS	OvCa9_classI_Rep3	3	534.3440551757812	2	534.341529	1066.66851	1.9733	0.0010544	1.6132	0.00086199	3.5865	0.0019164	534.3423036869325	64.763	1.4145	61.77	61.395	62.809	-2.9933					70	27	3	0	0	0	0.65476	1	2593	2593		25.45	8.977	1	193540			44627	4578	36920	36943	48105	48105					0.1378383600986126
PVVPGRGR	8	Unmodified	_PVVPGRGR_					0	0	0			REV__ENST00000557986.5_1_15:60685624-60688481:-|nuORF	REV__ENST00000557986.5_1_15:60685624-60688481:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	419.25634765625	2	419.256311	836.49807	-0.8569	-0.00035926	1.2027	0.00050423	0.34578	0.00014497	419.2566953098637	38.747	0.84102	36.038	35.717	36.558	-2.7097					34	16	3	0	0	0	0.74595	1	1843	1843		14.664	0.88877	1	89123	+		44628	27581	36921	36944	48106	48106					0.0732806140260891
PVVPKMEKEL	10	Oxidation (M)	_PVVPKM(Oxidation (M))EKEL_		PVVPKM(1)EKEL		PVVPKM(43)EKEL	0	0	1		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13;AKAP13|p.T960Hfs*6|2|0.04|ENSG00000170776|chr15:85580945-85580946|-/C|frameshift_variant;AKAP13|p.N982Ifs*27|1|0.2|ENSG00000170776|chr15:85581012-85581012|A/-|frameshift_variant;AKAP13-SPI1|1|fusion	nc|ENSG00000170776|Q12802-4|AKAP13;AKAP13-SPI1|1|fusion	nc|ENSG00000170776|Q12802-4|AKAP13	MSMS	OvCa99_classI_Rep5	1	593.3302001953125	2	593.331024	1184.6475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.82	1	108.82	108.32	109.32	0								0	0	0	0.15338	1	12314	12314		42.864	10.052	1				44629	7133;56	36922	36945	48107	48107		0			0.06255781119693893
PVVPPTEL	8	Unmodified	_PVVPPTEL_					0	0	0			REV__ENST00000523304.1_1_8:67526092-67526455:-|nuORF	REV__ENST00000523304.1_1_8:67526092-67526455:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	426.2456970214844	2	426.247286	850.48002	-0.93249	-0.00039747	-2.0488	-0.0008733	-2.9813	-0.0012708	426.2463036759244	138.33	1.7168	138.1	137.59	139.3	-0.22696					83	34	3	0	0	0	0.74679	1	13822	13822		28.254	4.0515	1	161940	+		44630	27091	36923	36946	48108	48108					0.04879881637236849
PVVPRRLN	8	Unmodified	_PVVPRRLN_					0	0	0			REV__sp|P16788|UL97_HCMVASerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL97PE=1SV=1	REV__sp|P16788|UL97_HCMVASerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL97PE=1SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	475.7984313964844	2	475.798343	949.582134	-1.1416	-0.00054318	1.0631	0.00050583	-0.078494	-3.7347E-05	475.7987527158406	55.46	1.1933	52.646	52.022	53.215	-2.8139					74	23	4	0	0	0	0.74679	1	3850	3850		28.254	1.4582	1	547610	+		44631	29434	36924	36947	48109	48109					0.10532592499509974
PVVRRELAL	9	Unmodified	_PVVRRELAL_					0	0	0		ENST00000587013.5_1_19:38882915-38886805:+|nuORF	ENST00000587013.5_1_19:38882915-38886805:+|nuORF	ENST00000587013.5_1_19:38882915-38886805:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	526.8323974609375	2	526.832383	1051.65021	-0.02688	-1.4162E-05	2.9838	0.001572	2.9569	0.0015578	526.8321214850487	69.898	2.0087	67.178	66.856	68.864	-2.7196					118	39	6	0	0	0	0.22961	1	3188	3188		71.296	5.4925	1	1842000			44632	14055	36925	36948	48110	48110					0.12645417359499334
PVVRRPPL	8	Unmodified	_PVVRRPPL_					0	0	0		ENST00000396953.6_2_3:12882387-12882978:-|nuORF	ENST00000396953.6_2_3:12882387-12882978:-|nuORF	ENST00000396953.6_2_3:12882387-12882978:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	467.300537109375	2	467.303262	932.59197	-2.6989	-0.0012612	-1.7541	-0.00081971	-4.453	-0.0020809	467.3023498206503	147.52	1.7467	147.29	146.82	148.57	-0.22696					88	34	4	0	0	0	0.74595	1	14915	14915		14.664	0	1	302680			44633	11328	36926	36949	48111	48111					0.12297780504889033
PVVSRLIL	8	Unmodified	_PVVSRLIL_					0	0	0		ENSG00000117501|ENST00000367759|MROH9	ENSG00000117501|ENST00000367759|MROH9	ENSG00000117501|ENST00000367759|MROH9	MULTI-MSMS	OvCa9_classI_Rep3	3	448.79974365234375	2	448.80002	895.585488	0.73618	0.0003304	-0.70585	-0.00031678	0.030333	1.3614E-05	448.7995819385941	119.43	1.6759	118.4	117.98	119.66	-1.0271					86	33	4	0	0	0	0.57878	1	9077	9077		68.485	2.6815	1	762460			44634	3259	36927	36950	48112	48112					0.13351842553538518
PVVVEREPE	9	Unmodified	_PVVVEREPE_					0	0	0			REV__ENSG00000166106|ENST00000299164|ADAMTS15	REV__ENSG00000166106|ENST00000299164|ADAMTS15	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.2860107421875	2	527.282389	1052.55022	-0.14477	-7.6336E-05	-3.426	-0.0018065	-3.5708	-0.0018828	527.2803371755673	113.96	0.88845	113.85	113.47	114.35	-0.11777					32	17	3	0	0	0	0.027462	1	10782	10782		18.324	0	1	21411	+		44635	21157	36928	36951	48113	48113					0.026051352350577872
PVVVEREPE	9	Unmodified	_PVVVEREPE_					0	0	0			REV__ENSG00000166106|ENST00000299164|ADAMTS15	REV__ENSG00000166106|ENST00000299164|ADAMTS15	MULTI-MATCH	OvCa9_classI_Rep3	3		2	527.282389	1052.55022	-0.74404	-0.00039232	-1.6087	-0.00084823	-2.3527	-0.0012406	527.280609945564	115.09	0.691	114.03	113.8	114.49	-1.055	0.074721	0.0014718	NaN	12.207	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13512	+		44636	21157	36928	36951							0.026051352350577872
PVVVEREPE	9	Unmodified	_PVVVEREPE_					0	0	0			REV__ENSG00000166106|ENST00000299164|ADAMTS15	REV__ENSG00000166106|ENST00000299164|ADAMTS15	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	527.282389	1052.55022	-0.34437	-0.00018158	-4.0914	-0.0021573	-4.4357	-0.0023389	527.2794411912884	115.39	0.64307	113.99	113.72	114.37	-1.3977	0.037511	-0.0011463	NaN	12.207	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26569	+		44637	21157	36928	36951							0.026051352350577872
PVVVGSGRA	9	Unmodified	_PVVVGSGRA_					0	0	0		ENST00000355943.7_1_5:110074761-110074947:+|nuORF	ENST00000355943.7_1_5:110074761-110074947:+|nuORF	ENST00000355943.7_1_5:110074761-110074947:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	422.1868591308594	2	421.248152	840.481751	-0.22991	-9.6849E-05	0.31964	0.00013465	0.089733	3.78E-05	421.2481573434967	56.974	0.96741	53.629	53.324	54.291	-3.3449					27	18	2	0	0	0	0.027462	1	3645	3645		26.796	7.4361	1	34376			44638	10687	36929	36952	48114	48114					0.05512935445858602
PVVVGSGRA	9	Unmodified	_PVVVGSGRA_					0	0	0		ENST00000355943.7_1_5:110074761-110074947:+|nuORF	ENST00000355943.7_1_5:110074761-110074947:+|nuORF	ENST00000355943.7_1_5:110074761-110074947:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	421.248152	840.481751	-0.099163	-4.1772E-05	-0.26981	-0.00011366	-0.36898	-0.00015543	421.2479455540259	53.949	0.51869	53.949	53.774	54.293	0	0.15993	-0.0002144	NaN	19.36	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	810700			44639	10687	36929	36952							0.05512935445858602
PVWCLHTV	8	Unmodified	_PVWCLHTV_					0	0	0			REV__ENST00000461942.5_1_9:116083780-116093329:-|nuORF	REV__ENST00000461942.5_1_9:116083780-116093329:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.7673034667969	2	477.746931	953.479308	-1.221	-0.00058333	2.9211	0.0013956	1.7001	0.00081223	477.7487855902299	88.751	0.30255	86.148	85.984	86.286	-2.6027					6	5	2	0	0	0	0.028476	1	7581	7581		21.702	0	1	17836	+		44640	20095	36930	36953	48115	48115					0.0007076371651919544
PVWKYKWVQ	9	Unmodified	_PVWKYKWVQ_					0	0	0		tr|A0A7D6VR59|A0A7D6VR59_9CLOTCarbohydratekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18105PE=4SV=1	tr|A0A7D6VR59|A0A7D6VR59_9CLOTCarbohydratekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18105PE=4SV=1	tr|A0A7D6VR59|A0A7D6VR59_9CLOTCarbohydratekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18105PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	412.5701599121094	3	411.897481	1232.67061	0.39562	0.00016296	0.44513	0.00018335	0.84076	0.00034631	412.2319152657481	20.42	0.20477	19.081	18.954	19.158	-1.3386					5	3	2	0	0	0	0.027462	1	34	34		25.574	0	1	6762.1			44641	34898	36931	36954	48116	48116					0.06358588019315903
PVYLFVIALA	10	Unmodified	_PVYLFVIALA_					0	0	0		tr|A0A553SPM3|A0A553SPM3_NIACIAPCfamilypermeaseOS=NialliacirculansOX=1397GN=CEQ21_26690PE=4SV=1	tr|A0A553SPM3|A0A553SPM3_NIACIAPCfamilypermeaseOS=NialliacirculansOX=1397GN=CEQ21_26690PE=4SV=1	tr|A0A553SPM3|A0A553SPM3_NIACIAPCfamilypermeaseOS=NialliacirculansOX=1397GN=CEQ21_26690PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.3306884765625	2	553.336436	1104.65832	-3.6376	-0.0020128	-3.9217	-0.00217	-7.5593	-0.0041828	553.3340858441829	153.01	1.0617	151.57	151.24	152.3	-1.435					63	25	4	0	0	0	0.79715	1	15181	15181		19.36	1.995	1	106460			44642	34063	36932	36955	48117	48117					0.11017551556278704
PVYRRGGFL	9	Unmodified	_PVYRRGGFL_					0	0	0		ENSG00000179564|ENST00000316436|LSMEM2	ENSG00000179564|ENST00000316436|LSMEM2	ENSG00000179564|ENST00000316436|LSMEM2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.2770385742188	2	532.803626	1063.5927	-0.9065	-0.00048299	-1.0312	-0.00054945	-1.9377	-0.0010324	532.8028488676267	59.316	0.74141	55.924	55.655	56.396	-3.392					30	11	3	0	0	0	0.027462	1	3945	3945		30.504	0	1	185080			44643	7831	36933	36956	48118	48118					0.06344575153957521
PVYVNQVKV	9	Unmodified	_PVYVNQVKV_					0	0	0		ENSG00000135312|ENST00000369947|HTR1B	ENSG00000135312|ENST00000369947|HTR1B	ENSG00000135312|ENST00000369947|HTR1B	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3035278320312	2	523.305667	1044.59678	-2.1227	-0.0011108	-1.8084	-0.00094634	-3.9311	-0.0020572	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.59983	1	11538	11538		31.955	1.4512	1	183010			44644	4363	36934	36957	48119	48119					0.0762661985700106
PWALMGIVL	9	Unmodified	_PWALMGIVL_					0	0	0			REV__ENSG00000113504|ENST00000264930|SLC12A7	REV__ENSG00000113504|ENST00000264930|SLC12A7	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.26580810546875	2	500.288431	998.562309	2.2103	0.0011058	-3.8991	-0.0019507	-1.6888	-0.00084489	500.2862769416635	99.618	0.70728	99.618	99.276	99.984	0					23	16	2	0	0	0	0.02744	1	10998	10998		60.404	19.625	1	506520	+		44645	18152	36935	36958	48120	48120					0.06297080444517178
PWEKAAELLI	10	Unmodified	_PWEKAAELLI_					0	0	0			REV__ENST00000460072.5_1_2:39963877-39988481:-|nuORF	REV__ENST00000460072.5_1_2:39963877-39988481:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	585.3596801757812	2	585.331882	1168.64921	-2.8217	-0.0016516	-0.43612	-0.00025528	-3.2578	-0.0019069	585.3318521129157	125.89	0.53798	124.47	124.29	124.83	-1.4143					15	10	2	0	0	0	0.026867	1	11966	11966		51.193	8.3284	1	20195	+		44646	19503	36936	36959	48121	48121					0.07163158199955433
PWEKAAELLI	10	Unmodified	_PWEKAAELLI_					0	0	0			REV__ENST00000460072.5_1_2:39963877-39988481:-|nuORF	REV__ENST00000460072.5_1_2:39963877-39988481:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	585.331882	1168.64921	0.16796	9.831E-05	-3.0739	-0.0017993	-2.906	-0.001701	585.3300744053366	125.58	0.4662	124.53	124.32	124.78	-1.0519	0.027805	-0.0021711	NaN	42.864	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20626	+		44647	19503	36936	36959							0.07163158199955433
PWGPHNTM	8	Unmodified	_PWGPHNTM_					0	0	0			REV__MER81_dup235|chr1:206069521-206069622:+|2.137931608245025|0.1081369337007162|4.31|423.0|1|1|sense	REV__MER81_dup235|chr1:206069521-206069622:+|2.137931608245025|0.1081369337007162|4.31|423.0|1|1|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	470.2115783691406	2	470.210712	938.406871	0.22869	0.00010753	0.81988	0.00038552	1.0486	0.00049305	470.21095810442347	111.25	1.4293	111.11	110.73	112.16	-0.13961					80	28	4	0	0	0	0.68312	1	10483	10483		46.766	7.7449	1	321870	+		44648	28662	36937	36960	48122	48122					-0.06479570357021203
PWHLPGAG	8	Unmodified	_PWHLPGAG_					0	0	0			REV__ENST00000343053.4_2_9:140167493-140167778:+|nuORF	REV__ENST00000343053.4_2_9:140167493-140167778:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	417.7177734375	2	417.716488	833.418422	1.3381	0.00055895	0.98394	0.00041101	2.322	0.00096995	417.7167388697413	158.03	2.1569	158.03	157.65	159.81	0					84	44	3	0	0	0	0.7363	1	18512	18512		33.493	3.6514	1	192830	+		44649	24663	36938	36961	48123	48123					-0.004950052713979858
PWHLPGAG	8	Unmodified	_PWHLPGAG_					0	0	0			REV__ENST00000343053.4_2_9:140167493-140167778:+|nuORF	REV__ENST00000343053.4_2_9:140167493-140167778:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	417.7174072265625	2	417.716488	833.418422	-1.4249	-0.00059521	1.2168	0.00050829	-0.20809	-8.6922E-05	417.71682894919303	72.477	2.986	69.08	68.716	71.702	-3.3961					112	61	3	0	0	0	0.7363	1	5581	5581		33.493	3.6514	1	629690	+		44650	24663	36938	36961	48124	48124					-0.004950052713979858
PWILVNGSL	9	Unmodified	_PWILVNGSL_					0	0	0			REV__ENSG00000271271|ENST00000604629|UGT2A2	REV__ENSG00000271271|ENST00000604629|UGT2A2	MULTI-MSMS	OvCa9_classI_Rep2	2	499.78643798828125	2	499.78711	997.559667	-1.5965	-0.00079791	-2.9043	-0.0014515	-4.5008	-0.0022494	499.78564840944136	117.8	1.092	117.66	117.24	118.33	-0.14755					51	21	4	0	0	0	0.56889	1	11292	11292		35.618	4.0885	1	123670	+		44651	23608	36939	36962	48125	48125					0.06078948311221666
PWIYRRAS	8	Unmodified	_PWIYRRAS_					0	0	0		ENST00000453195.5_1_6:30166895-30168914:-|nuORF;ENST00000454678.6_1_6:30166895-30168914:-|nuORF	ENST00000453195.5_1_6:30166895-30168914:-|nuORF	ENST00000453195.5_1_6:30166895-30168914:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	524.827392578125	2	524.787976	1047.5614	-6.3101	-0.0033115	3.9217	0.0020581	-2.3884	-0.0012534	524.7898239060701	156.17	0.74615	155.09	154.85	155.59	-1.073					22	17	2	0	0	0	0.028476	1	13450	13450		50.025	7.6284	1	16806			44652	12070	36940	36963	48126	48126					0.03952002119831377
PWIYRRAS	8	Unmodified	_PWIYRRAS_					0	0	0		ENST00000453195.5_1_6:30166895-30168914:-|nuORF;ENST00000454678.6_1_6:30166895-30168914:-|nuORF	ENST00000453195.5_1_6:30166895-30168914:-|nuORF	ENST00000453195.5_1_6:30166895-30168914:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	524.787976	1047.5614	-4.2101	-0.0022094	2.1741	0.0011409	-2.036	-0.0010685	524.7892114962184	155.7	0.47189	155.48	155.31	155.79	-0.22696	0.25585	-0.00096346	NaN	50.025	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19842			44653	12070	36940	36963							0.03952002119831377
PWKQEVIV	8	Unmodified	_PWKQEVIV_					0	0	0			REV__ENST00000463912.5_1_7:139083405-139086952:+|nuORF	REV__ENST00000463912.5_1_7:139083405-139086952:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	499.78594970703125	2	499.78711	997.559667	-1.5965	-0.00079791	-2.9043	-0.0014515	-4.5008	-0.0022494	499.78564840944136	117.8	1.092	117.66	117.24	118.33	-0.14755					51	21	4	0	0	0	0.68714	1	11303	11303		45.952	3.5558	1	123670	+		44654	26139	36941	36964	48127	48127					0.060789483112330345
PWKTRLIALAN	11	Unmodified	_PWKTRLIALAN_					0	0	0		tr|A0A7D6ZU35|A0A7D6ZU35_9CLOTPeptidoglycan-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22590PE=4SV=1	tr|A0A7D6ZU35|A0A7D6ZU35_9CLOTPeptidoglycan-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22590PE=4SV=1	tr|A0A7D6ZU35|A0A7D6ZU35_9CLOTPeptidoglycan-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22590PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	641.882568359375	2	641.885147	1281.75574	-4.6434	-0.0029805	0.6524	0.00041876	-3.991	-0.0025618	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.72064	1	15498	15498		22.58	0	1	543390			44655	35765	36942	36965	48128	48128					0.12613333485114708
PWLAAKRCA	9	Unmodified	_PWLAAKRCA_					0	0	0			REV__ENST00000459889.5_1_7:157208087-157208789:+|nuORF	REV__ENST00000459889.5_1_7:157208087-157208789:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	508.27978515625	2	508.278929	1014.54331	-1.6711	-0.00084936	3.4335	0.0017452	1.7624	0.0008958	508.28074905402514	34.159	1.2366	31.449	31.119	32.356	-2.7097					49	24	3	0	0	0	0.30002	1	1297	1297		62.978	25.95	1	122020	+		44656	26070	36943	36966	48129	48129					0.03661543873477058
PWLFSLAW	8	Unmodified	_PWLFSLAW_					0	0	0		ENSG00000178795|ENST00000315938|GDPD4;nc|ENSG00000178795|Q6W3E5|GDPD4	ENSG00000178795|ENST00000315938|GDPD4	ENSG00000178795|ENST00000315938|GDPD4	MULTI-SECPEP	OvCa9_classI_Rep2	2	509.30010986328125	2	510.271096	1018.52764	0.82012	0.00041848	0.33841	0.00017268	1.1585	0.00059116	510.2710686638933	30.056	0.44465	27.346	27.162	27.607	-2.7097					14	8	2	0	0	0	0.028476	1	789	789		29.842	8.1392	1	13973			44657	7776	36944	36967	48130	48130					0.019115806280638026
PWLKHPLPKPG	11	Unmodified	_PWLKHPLPKPG_					0	0	0		ENST00000453011.5_1_1:101491438-101538219:+|nuORF;ENST00000446527.5_1_1:101491480-101541065:+|nuORF	ENST00000453011.5_1_1:101491438-101538219:+|nuORF	ENST00000453011.5_1_1:101491438-101538219:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	423.9210510253906	3	423.920397	1268.73936	0.4048	0.00017161	2.0714	0.00087811	2.4762	0.0010497	423.92128381620927	43.861	1.6901	41.151	40.857	42.547	-2.7097					105	33	5	0	0	0	0.70032	1	2490	2490		29.551	6.9711	1	640520			44658	11996	36945	36968	48131	48131					0.11574252318996514
PWLQGSVLV	9	Unmodified	_PWLQGSVLV_					0	0	0		ENST00000482556.5_1_20:47269987-47271866:-|nuORF	ENST00000482556.5_1_20:47269987-47271866:-|nuORF	ENST00000482556.5_1_20:47269987-47271866:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	499.7870178222656	2	499.78711	997.559667	-1.5965	-0.00079791	-2.9043	-0.0014515	-4.5008	-0.0022494	499.78564840944136	117.8	1.092	117.66	117.24	118.33	-0.14755					51	21	4	0	0	0	0.27001	2	11281	11281;11297		66.429	8.618	1	123670			44659	12574	36946	36969	48132;48133	48132					0.060789483112330345
PWLRDLPGSE	10	Unmodified	_PWLRDLPGSE_					0	0	0		ENSG00000136002|ENST00000409359|ARHGEF4	ENSG00000136002|ENST00000409359|ARHGEF4	ENSG00000136002|ENST00000409359|ARHGEF4	MULTI-SECPEP	OvCa9_classI_Rep2	2	584.8386840820312	2	585.301113	1168.58767	-0.95721	-0.00056026	0.57513	0.00033663	-0.38208	-0.00022363	585.3014764592182	84.012	1.1708	82.466	81.83	83.001	-1.5462					49	22	3	0	0	0	0.026849	1	7234	7234		40.778	0	1	87628			44660	4445	36947	36970	48134	48134					0.010122265006430098
PWNDYVHKAI	10	Unmodified	_PWNDYVHKAI_					0	0	0			REV__ENSG00000122042|ENST00000380680|UBL3	REV__ENSG00000122042|ENST00000380680|UBL3	MULTI-MSMS	OvCa99_classI_Rep5	1	621.8165893554688	2	621.81693	1241.61931	-0.12166	-7.565E-05	-3.8452	-0.002391	-3.9669	-0.0024667	621.8146228120879	63.505	1.9343	63.505	63.1	65.034	0					108	47	4	0	0	0	0.50999	1	5724	5724		52.937	1.744	1	7181100	+		44661	18576	36948	36971	48135	48135					0.008162192546024016
PWNDYVHKAI	10	Unmodified	_PWNDYVHKAI_					0	0	0			REV__ENSG00000122042|ENST00000380680|UBL3	REV__ENSG00000122042|ENST00000380680|UBL3	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	621.81693	1241.61931	-0.12166	-7.565E-05	-3.8452	-0.002391	-3.9669	-0.0024667	621.8146228120879	63.505	1.9343	63.505	63.1	65.034	0	0	0	NaN	52.937	108	47	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7181100	+		44662	18576	36948	36971							0.008162192546024016
PWPLAGHG	8	Unmodified	_PWPLAGHG_					0	0	0			REV__ENST00000428216.3_1_20:3846472-3846547:+|nuORF	REV__ENST00000428216.3_1_20:3846472-3846547:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	417.7173767089844	2	417.716488	833.418422	1.7448	0.00072883	0.59892	0.00025018	2.3437	0.00097901	417.7166426496585	144.78	1.5205	144.78	143.91	145.43	0					51	31	2	0	0	0	0.7363	1	16953	16953		33.493	0	1	78574	+		44663	25688	36949	36972	48136	48136					-0.004950052713866171
PWPLAGHG	8	Unmodified	_PWPLAGHG_					0	0	0			REV__ENST00000428216.3_1_20:3846472-3846547:+|nuORF	REV__ENST00000428216.3_1_20:3846472-3846547:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	417.7176208496094	2	417.716488	833.418422	1.3805	0.00057667	-0.62323	-0.00026033	0.75729	0.00031633	417.7161113684023	151.24	0.89568	151.24	150.84	151.74	0					29	17	2	0	0	0	0.69862	1	17711	17711		43.626	1.1516	1	40364	+		44664	25688	36949	36972	48137	48137					-0.004950052713866171
PWPLAGHG	8	Unmodified	_PWPLAGHG_					0	0	0			REV__ENST00000428216.3_1_20:3846472-3846547:+|nuORF	REV__ENST00000428216.3_1_20:3846472-3846547:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	417.7178955078125	2	417.716488	833.418422	1.5603	0.00065178	0.56199	0.00023475	2.1223	0.00088653	417.7165732909185	155.81	4.0147	155.81	153.69	157.7	0					162	79	3	0	0	0	0.7363	1	18233	18233		33.493	0	1	421790	+		44665	25688	36949	36972	48138	48138					-0.004950052713866171
PWPLAGHG	8	Unmodified	_PWPLAGHG_					0	0	0			REV__ENST00000428216.3_1_20:3846472-3846547:+|nuORF	REV__ENST00000428216.3_1_20:3846472-3846547:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	417.7176513671875	2	417.716488	833.418422	1.3381	0.00055895	0.98394	0.00041101	2.322	0.00096995	417.7167388697413	158.03	2.1569	158.03	157.65	159.81	0					84	44	3	0	0	0	0.69862	1	18554	18554		43.626	0	1	192830	+		44666	25688	36949	36972	48139	48139					-0.004950052713866171
PWPRPLPV	8	Unmodified	_PWPRPLPV_					0	0	0		ENST00000261191.11_1_12:27090906-27091155:-|nuORF	ENST00000261191.11_1_12:27090906-27091155:-|nuORF	ENST00000261191.11_1_12:27090906-27091155:-|nuORF	MSMS	OvCa9_classI_Rep2	2	481.282958984375	2	481.284537	960.554522	NaN	NaN	NaN	NaN	NaN	NaN	NaN	160.02	1	159.79	159.29	160.29	-0.22696								0	0	0	0.30129	1	16273	16273		23.037	7.4005	1				44667	9857	36950	36973	48140	48140					0.07266689239270363
PWPRPRATR	9	Unmodified	_PWPRPRATR_					0	0	0			REV__ENST00000261918.8_1_15:74711256-74726287:-|nuORF	REV__ENST00000261918.8_1_15:74711256-74726287:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	568.8258666992188	2	568.825424	1135.63629	0.72479	0.00041228	1.4346	0.00081603	2.1594	0.0012283	568.826154578799	128.02	1.045	126.93	126.62	127.67	-1.0933					47	20	4	0	0	0	0.51865	1	10070	10070		40.778	1.5253	1	139430	+		44668	23965	36951	36974	48141	48141					0.07390184651058007
PWPVGHKPFSL	11	Unmodified	_PWPVGHKPFSL_					0	0	0			REV__ENST00000393931.7_1_17:39911314-39911869:-|nuORF	REV__ENST00000393931.7_1_17:39911314-39911869:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	421.25537109375	3	422.232752	1263.67643	1.9886	0.00083964	3.2813	0.0013855	5.2698	0.0022251	422.23446175637997	64.312	0.80878	61.318	61.038	61.847	-2.9933					36	15	3	0	0	0	0.025995	1	2450	2450		36.318	12.94	1	45461	+		44669	25289	36952	36975	48142	48142					0.055136865309805216
PWPVGHKPFSL	11	Unmodified	_PWPVGHKPFSL_					0	0	0			REV__ENST00000393931.7_1_17:39911314-39911869:-|nuORF	REV__ENST00000393931.7_1_17:39911314-39911869:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	422.232752	1263.67643	-0.76946	-0.00032489	6.5933	0.0027839	5.8239	0.002459	422.2355032533576	63.755	1.782	61.01	60.638	62.42	-2.7444	-0.21048	0.00062758	NaN	36.318	93	33	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	437060	+		44670	25289	36952	36975							0.055136865309805216
PWQAGLFHLT	10	Unmodified	_PWQAGLFHLT_					0	0	0		ENSG00000213022|ENST00000594211|KLK9	ENSG00000213022|ENST00000594211|KLK9	ENSG00000213022|ENST00000594211|KLK9	MULTI-MSMS	OvCa99_classI_Rep5	1	585.3121948242188	2	585.308741	1168.60293	0.78647	0.00046033	3.9958	0.0023388	4.7823	0.0027991	585.3106281811599	156.73	2.6681	156.73	155.84	158.51	0					109	53	4	0	0	0	0.62299	1	18363	18363		39.253	0.49923	1	172620			44671	9111	36953	36976	48143	48143					0.02537138088496249
PWRVRGLLLG	10	Unmodified	_PWRVRGLLLG_					0	0	0			REV__ENST00000419336.6_1_7:100491185-100491476:-|nuORF	REV__ENST00000419336.6_1_7:100491185-100491476:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	583.8583374023438	2	583.861475	1165.7084	-4.259	-0.0024867	-0.13514	-7.8902E-05	-4.3942	-0.0025656	583.8612282732444	154.9	1.2136	154.67	154.34	155.56	-0.22696					82	33	4	0	0	0	0.75594	1	15804	15804		24.203	2.2429	1	148650	+		44672	25581	36954	36977	48144	48144					0.1321709900478254
PWTILQDSFF	10	Unmodified	_PWTILQDSFF_					0	0	0		ENST00000591254.1_1_19:12841477-12841717:-|nuORF	ENST00000591254.1_1_19:12841477-12841717:-|nuORF	ENST00000591254.1_1_19:12841477-12841717:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	627.3145141601562	2	627.313689	1252.61282	0.19401	0.0001217	1.8073	0.0011338	2.0013	0.0012555	627.3147643499533	21.135	0.35612	21.135	20.974	21.331	0					27	9	4	0	0	0	0.79186	1	91	91		20.947	0.95016	1	135060			44673	14117	36955	36978	48145	48145					-0.0033771869680094824
PWTNVVLP	8	Unmodified	_PWTNVVLP_					0	0	0			REV__ENST00000511231.1_1_4:178361425-178363529:-|nuORF	REV__ENST00000511231.1_1_4:178361425-178363529:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.2821350097656	2	463.260728	924.506903	-5.7029	-0.0026419	0.69022	0.00031975	-5.0127	-0.0023222	463.2610837742386	157.05	1.2522	155.51	155.16	156.42	-1.545					52	32	2	0	0	0	0.028476	1	15599	15599		37.028	8.7742	1	46906	+		44674	16614	36956	36979	48146	48146					0.04162990248414644
PWTPPVLLI	9	Unmodified	_PWTPPVLLI_					0	0	0			REV__nc|ENSG00000101096|Q13469-5|NFATC2	REV__nc|ENSG00000101096|Q13469-5|NFATC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.3165283203125	2	518.315503	1034.61645	2.0408	0.0010578	0.66766	0.00034606	2.7085	0.0014039	518.3157944372941	136.58	3.063	135.03	133.61	136.67	-1.5437					148	63	3	0	0	0	0.58665	1	13242	13242		33.516	6.7195	1	141910	+		44675	17472	36957	36980	48147	48147					0.10052995867749814
PWTPPVLLI	9	Unmodified	_PWTPPVLLI_					0	0	0			REV__nc|ENSG00000101096|Q13469-5|NFATC2	REV__nc|ENSG00000101096|Q13469-5|NFATC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.3178100585938	2	518.315503	1034.61645	1.2927	0.00067005	1.6545	0.00085753	2.9472	0.0015276	518.3163014324844	138.42	1.5254	136.89	136.44	137.96	-1.5284					73	32	3	0	0	0	0.50066	1	13497	13497		42.474	14.22	1	110380	+		44676	17472	36957	36980	48148	48148					0.10052995867749814
PWVLGDHET	9	Unmodified	_PWVLGDHET_					0	0	0			REV__chr11:72686191-72686879|106|11.77|0.21|5.81|-|0|TE_info:L2b,L2b_dup62905,L2,LINE,donor,+,72686879,72687300|ARAP1,None|6	REV__chr11:72686191-72686879|106|11.77|0.21|5.81|-|0|TE_info:L2b,L2b_dup62905,L2,LINE,donor,+,72686879,72687300|ARAP1,None|6	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.7628784179688	2	527.253631	1052.49271	-1.1368	-0.00059936	0.9425	0.00049693	-0.19427	-0.00010243	527.2539877108449	121.22	0.74078	121.02	120.7	121.44	-0.19718					24	14	3	0	0	0	0.027456	1	11705	11705		57.811	27.308	1	30187	+		44677	15867	36958	36981	48149	48149					-0.031437069705361864
PWVLGDHET	9	Unmodified	_PWVLGDHET_					0	0	0			REV__chr11:72686191-72686879|106|11.77|0.21|5.81|-|0|TE_info:L2b,L2b_dup62905,L2,LINE,donor,+,72686879,72687300|ARAP1,None|6	REV__chr11:72686191-72686879|106|11.77|0.21|5.81|-|0|TE_info:L2b,L2b_dup62905,L2,LINE,donor,+,72686879,72687300|ARAP1,None|6	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.76220703125	2	527.253631	1052.49271	0.79964	0.00042162	-1.2622	-0.00066549	-0.46253	-0.00024387	527.2530075445299	121.88	0.78542	120.85	120.53	121.32	-1.0286					32	14	3	0	0	0	0.027456	1	9353	9353		47.916	18.766	1	30543	+		44678	15867	36958	36981	48150	48150					-0.031437069705361864
PWVTLLFVV	9	Unmodified	_PWVTLLFVV_					0	0	0			REV__L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|445|3|anti-sense	REV__L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|445|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.759521484375	2	537.323328	1072.6321	1.9915	0.0010701	-1.1886	-0.00063868	0.80287	0.0004314	537.3226693676495	85.219	0.37509	85.219	85.087	85.462	0					14	8	2	0	0	0	0.027462	1	8964	8964		40.573	6.4001	1	421630	+		44679	28491	36959	36982	48151	48151					0.09869282384806866
PWYFYLIN	8	Unmodified	_PWYFYLIN_					0	0	0		nc|ENSG00000086848|Q9H6U8-2|ALG9;nc|ENSG00000086848|Q9H6U8-4|ALG9;nc|ENSG00000086848|Q9H6U8|ALG9;ENSG00000086848|ENST00000616540|ALG9	nc|ENSG00000086848|Q9H6U8-2|ALG9	nc|ENSG00000086848|Q9H6U8-2|ALG9	MULTI-MSMS	OvCa99_classI_Rep5	1	558.2837524414062	2	558.28166	1114.54877	0.87597	0.00048904	2.5363	0.001416	3.4123	0.001905	558.2829316327775	161.41	1.3185	161.41	161.11	162.43	0					64	25	4	0	0	0	0.72922	1	18961	18961		37.028	5.0736	1	852760			44680	1755	36960	36983	48152	48152					-0.003924540630350748
PYAKPIPAQF	10	Unmodified	_PYAKPIPAQF_					0	0	0		WDR33|p.D1237Vfs*18|1|0.34|ENSG00000136709|chr2:127708748-127708749|-/GCGATGGAAACCAAAGGTTTCCTTAAGGCAAGCA|frameshift_variant;ENSG00000136709|ENST00000322313|WDR33	WDR33|p.D1237Vfs*18|1|0.34|ENSG00000136709|chr2:127708748-127708749|-/GCGATGGAAACCAAAGGTTTCCTTAAGGCAAGCA|frameshift_variant	WDR33|p.D1237Vfs*18|1|0.34|ENSG00000136709|chr2:127708748-127708749|-/GCGATGGAAACCAAAGGTTTCCTTAAGGCAAGCA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	566.3162841796875	2	566.313492	1130.61243	2.2509	0.0012747	0.084333	4.7759E-05	2.3353	0.0013225	566.3131851761303	85.475	0.57816	85.475	85.252	85.83	0					33	13	4	0	0	0	0.20801	1	8959	8959		93.195	24.409	1	2080400			44681	4504	36961	36984	48153	48153					0.05234906374039383
PYAKVITQL	9	Unmodified	_PYAKVITQL_					0	0	0		tr|A0A7D6VRY2|A0A7D6VRY2_9CLOTPyruvate:ferredoxinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=nifJPE=3SV=1	tr|A0A7D6VRY2|A0A7D6VRY2_9CLOTPyruvate:ferredoxinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=nifJPE=3SV=1	tr|A0A7D6VRY2|A0A7D6VRY2_9CLOTPyruvate:ferredoxinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=nifJPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.3233642578125	2	516.808042	1031.60153	0.61438	0.00031751	-0.91737	-0.00047411	-0.303	-0.00015659	516.8073418359631	82.409	1.0759	80.811	80.384	81.46	-1.5988					48	20	4	0	0	0	0.027426	1	7067	7067		73.975	31.579	1	293220			44682	34964	36962	36985	48154	48154					0.08699503999764602
PYAMQAPAMFM	11	Unmodified	_PYAMQAPAMFM_					0	0	0			REV__ENSG00000084070|ENST00000372718|SMAP2	REV__ENSG00000084070|ENST00000372718|SMAP2	MULTI-MSMS	OvCa9_classI_Rep2	2	629.2777709960938	2	629.27688	1256.53921	-2.0177	-0.0012697	3.8079	0.0023962	1.7902	0.0011266	629.2792052758709	117.72	2.1801	117.57	117.19	119.37	-0.14755					115	43	5	0	0	0	0.67814	1	11333	11333		37.159	1.9584	1	400120	+		44683	17115	36963	36986	48155	48155					-0.07880049726759353
PYCRHSRPD	9	Unmodified	_PYCRHSRPD_					0	0	0			REV__ENST00000584667.5_1_17:73702772-73703135:+|nuORF	REV__ENST00000584667.5_1_17:73702772-73703135:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.8104858398438	2	565.761632	1129.50871	0.83278	0.00047116	0.015617	8.8354E-06	0.8484	0.00047999	566.2605793732673	160.86	0.65349	160.86	160.4	161.06	0					11	8	2	0	0	0	0.027462	1	18861	18861		21.96	0	1	30292	+		44684	27846	36964	36987	48156	48156					-0.05086324005264942
PYCYLLLALG	10	Unmodified	_PYCYLLLALG_					0	0	0			REV__ENST00000466409.1_1_9:95874378-95875386:+|nuORF	REV__ENST00000466409.1_1_9:95874378-95875386:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	563.3040771484375	2	563.304278	1124.594	1.249	0.00070357	-2.6026	-0.0014661	-1.3536	-0.0007625	563.3027687199772	152.58	0.78264	152.58	152.16	152.95	0					35	19	2	0	0	0	0.5794	1	17875	17875		44.531	0.15388	1	100650	+		44685	21071	36965	36988	48157	48157					0.03669028407807673
PYDVHDYI	8	Unmodified	_PYDVHDYI_					0	0	0		ENSG00000146830|ENST00000678049|GIGYF1;chr7:100689555-100693937|423|15.18|0.0|20.53|-|ENST00000646601|GIGYF1,GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	ENSG00000146830|ENST00000678049|GIGYF1	MULTI-MSMS	OvCa99_classI_Rep5	1	511.23760986328125	2	511.234907	1020.45526	1.4074	0.0007195	3.3774	0.0017266	4.7848	0.0024461	511.2366583515208	123.22	0.96806	123.22	122.95	123.92	0					37	20	3	0	0	0	0.40641	1	14209	14209		86.935	1.5751	1	517800			44686	522	36966	36989	48158	48158					-0.05414798236142815
PYEEPNLSR	9	Unmodified	_PYEEPNLSR_					0	0	0			REV__tr|A0A553SMV2|A0A553SMV2_NIACINicotinatephosphoribosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_23225PE=3SV=1	REV__tr|A0A553SMV2|A0A553SMV2_NIACINicotinatephosphoribosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_23225PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.8540649414062	2	552.769645	1103.52474	2.4691	0.0013649	4.4096	0.0024375	6.8788	0.0038024	552.77245327802	91.645	0.29227	91.645	91.502	91.794	0					9	6	2	0	0	0	0.027417	1	9886	9886		43.651	0	1	153490	+		44687	30372	36967	36990	48159	48159					-0.022883392874064157
PYEQKFNKL	9	Unmodified	_PYEQKFNKL_					0	0	0			REV__tr|A0A553STB2|A0A553STB2_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04515PE=3SV=1	REV__tr|A0A553STB2|A0A553STB2_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04515PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	583.81787109375	2	583.813856	1165.61316	-1.0342	-0.00060375	2.0405	0.0011913	1.0063	0.0005875	583.8149473863361	103.56	1.0977	103.56	103.18	104.28	0					45	25	3	0	0	0	0.1804	1	11579	11579		79.713	8.4169	1	1566800	+		44688	30942	36968	36991	48160	48160					0.036977010230884844
PYFNAPVYL	9	Unmodified	_PYFNAPVYL_					0	0	0		nc|ENSG00000109534|Q9NY12-2|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;ENSG00000109534|ENST00000226796|GAR1	nc|ENSG00000109534|Q9NY12-2|GAR1	nc|ENSG00000109534|Q9NY12-2|GAR1	MULTI-MSMS	OvCa99_classI_Rep5	1	542.2805786132812	2	542.279118	1082.54368	1.9374	0.0010506	0.40436	0.00021928	2.3418	0.0012699	542.2791099074896	137.73	1.0511	137.73	137.4	138.45	0					75	22	5	0	0	0	0.057208	3	16067	16044;16067;16089		114.59	32.345	1	2271000			44689	2717	36969	36992	48161;48162;48163	48162					0.0057124207430661045
PYFNAPVYL	9	Unmodified	_PYFNAPVYL_					0	0	0		nc|ENSG00000109534|Q9NY12-2|GAR1;ENST00000503671.2_1_4:110737056-110740318:+|nuORF;ENST00000506840.5_1_4:110736915-110743667:+|nuORF;ENSG00000109534|ENST00000226796|GAR1	nc|ENSG00000109534|Q9NY12-2|GAR1	nc|ENSG00000109534|Q9NY12-2|GAR1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	542.279118	1082.54368	0.68007	0.00036879	-4.7549	-0.0025785	-4.0749	-0.0022097	542.2761434842306	139.61	1.5733	138.11	137.08	138.65	-1.4952	0.19086	-0.0048034	NaN	114.59	44	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12290			44690	2717	36969	36992							0.0057124207430661045
PYFPPPYQQ	9	Unmodified	_PYFPPPYQQ_					0	0	0		ENSG00000087510|ENST00000201031|TFAP2C	ENSG00000087510|ENST00000201031|TFAP2C	ENSG00000087510|ENST00000201031|TFAP2C	MULTI-SECPEP	OvCa9_classI_Rep3	3	569.3609008789062	2	568.7742	1135.53385	0.98489	0.00056018	-1.3982	-0.00079528	-0.41335	-0.0002351	568.7733337200145	65.188	1.6227	62.242	61.694	63.316	-2.9459					49	31	2	0	0	0	0.027462	1	2558	2558		24.203	4.8428	1	27930			44691	1777	36970	36993	48164	48164					-0.02849945931052389
PYFPPPYQQ	9	Unmodified	_PYFPPPYQQ_					0	0	0		ENSG00000087510|ENST00000201031|TFAP2C	ENSG00000087510|ENST00000201031|TFAP2C	ENSG00000087510|ENST00000201031|TFAP2C	MULTI-MATCH	OvCa9_classI_Rep2	2		2	568.7742	1135.53385	0.093021	5.2908E-05	-0.40289	-0.00022915	-0.30987	-0.00017625	568.7738524649415	65.072	1.2852	62.347	61.758	63.043	-2.7245	0.053393	0.00062076	NaN	24.203	39	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26762			44692	1777	36970	36993							-0.02849945931052389
PYFPPPYQQ	9	Unmodified	_PYFPPPYQQ_					0	0	0		ENSG00000087510|ENST00000201031|TFAP2C	ENSG00000087510|ENST00000201031|TFAP2C	ENSG00000087510|ENST00000201031|TFAP2C	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	568.7742	1135.53385	-0.31112	-0.00017696	-0.79741	-0.00045354	-1.1085	-0.0006305	568.7738764326997	65.777	1.3608	62.292	61.743	63.104	-3.4854	-0.0018557	0.00017198	NaN	24.203	65	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156900			44693	1777	36970	36993							-0.02849945931052389
PYGGGAERKL	10	Unmodified	_PYGGGAERKL_					0	0	0			REV__MCAM|p.R406P|1|0.36|ENSG00000076706|chr11:119311876-119311876|C/G|missense_variant	REV__MCAM|p.R406P|1|0.36|ENSG00000076706|chr11:119311876-119311876|C/G|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	524.2847290039062	2	524.282723	1046.55089	-1.5467	-0.00081093	1.3625	0.00071435	-0.18421	-9.6579E-05	524.2833307335856	70.062	0.89671	70.062	69.591	70.488	0					61	21	4	0	0	0	0.30325	1	6686	6686		80.455	3.137	1	3886500	+		44694	28643	36971	36994	48165	48165					0.02947974674748366
PYGKVQIYT	9	Unmodified	_PYGKVQIYT_					0	0	0		nc|ENSG00000109685|O96028-4|NSD2;nc|ENSG00000109685|O96028-2|NSD2;ENST00000353275.9_2_4:1944147-1980633:+|nuORF;ATP5I-WHSC1|1|fusion;ENSG00000109685|ENST00000508803|NSD2	nc|ENSG00000109685|O96028-4|NSD2	nc|ENSG00000109685|O96028-4|NSD2	MULTI-MSMS	OvCa9_classI_Rep3	3	534.7908935546875	2	534.78985	1067.56515	3.0352	0.0016232	0.018347	9.812E-06	3.0536	0.001633	534.7896759823677	56.343	2.6096	53.193	52.451	55.06	-3.1504					179	83	3	0	0	0	0.64427	1	1607	1607		26.693	4.733	1	87189			44695	132	36972	36995	48166	48166					0.034066271030496864
PYHKLSLL	8	Unmodified	_PYHKLSLL_					0	0	0			REV__ENST00000471370.5_1_12:58008223-58008295:+|nuORF	REV__ENST00000471370.5_1_12:58008223-58008295:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.289306640625	2	485.789653	969.564752	-1.1665	-0.00056669	-3.0885	-0.0015004	-4.255	-0.0020671	485.78795513050164	95.6	0.73915	93.772	93.531	94.271	-1.8286					19	14	2	0	0	0	0.028476	1	6292	6292		60.294	5.5293	1	97612	+		44696	26277	36973	36996	48167	48167					0.07875252173846548
PYHKLSLL	8	Unmodified	_PYHKLSLL_					0	0	0			REV__ENST00000471370.5_1_12:58008223-58008295:+|nuORF	REV__ENST00000471370.5_1_12:58008223-58008295:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.2890930175781	2	485.789653	969.564752	-0.044855	-2.179E-05	-3.4347	-0.0016685	-3.4796	-0.0016903	485.78740262314716	96.196	0.86069	93.77	93.559	94.42	-2.4256					20	16	2	0	0	0	0.028476	1	8535	8535		76.847	16.553	1	80476	+		44697	26277	36973	36996	48168	48168					0.07875252173846548
PYHPHPHVF	9	Unmodified	_PYHPHPHVF_					0	0	0		ENST00000557261.1_1_14:89816083-89817451:-|nuORF;FOXN3|p.E447Rfs*4|1|0.09|ENSG00000053254|chr14:89162548-89162549|-/G|frameshift_variant;ENSG00000053254|ENST00000557258|FOXN3;nc|ENSG00000053254|O00409|FOXN3	ENST00000557261.1_1_14:89816083-89817451:-|nuORF	ENST00000557261.1_1_14:89816083-89817451:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	565.781005859375	2	565.780151	1129.54575	0.18301	0.00010355	-0.20743	-0.00011736	-0.024418	-1.3815E-05	565.7799142093452	46.986	0.96181	46.986	46.719	47.681	0					50	21	4	0	0	0	0.054534	1	3367	3367		116.12	55.828	1	1113000			44698	1197	36974	36997	48169	48169					-0.013842843972042829
PYIGHPQAPL	10	Unmodified	_PYIGHPQAPL_					0	0	0		nc|ENSG00000168488|Q8WWM7-8|ATXN2L	nc|ENSG00000168488|Q8WWM7-8|ATXN2L	nc|ENSG00000168488|Q8WWM7-8|ATXN2L	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.8265380859375	2	546.795466	1091.57638	1.6467	0.00090043	-1.2162	-0.00066499	0.43057	0.00023544	547.2959446964979	92.097	0.38102	92.097	91.92	92.301	0					11	8	2	0	0	0	0.026768	1	9922	9922		40.573	3.4135	1	253680			44699	15167	36975	36998	48170	48170					0.03425449197175112
PYIHAARGLFV	11	Unmodified	_PYIHAARGLFV_					0	0	0			REV__ENST00000554295.1_1_12:98849015-98849897:-|nuORF	REV__ENST00000554295.1_1_12:98849015-98849897:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	622.3451538085938	2	622.35094	1242.68733	-2.97	-0.0018484	-1.4475	-0.00090085	-4.4175	-0.0027492	622.8511248974698	150.56	1.3509	149.12	148.58	149.93	-1.4344					43	30	2	0	0	0	0.70865	1	14923	14923		26.693	5.0072	1	17342	+		44700	27525	36976	36999	48171	48171					0.07569088905256649
PYISNIYLI	9	Unmodified	_PYISNIYLI_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MSMS	OvCa99_classI_Rep5	1	548.30908203125	2	548.307875	1094.6012	1.1762	0.00064491	0.93265	0.00051138	2.1088	0.0011563	548.3082656962919	146.62	1.5165	146.62	146.18	147.69	0					77	30	4	0	0	0	0.068524	1	17154	17154		108.09	28.148	1	1380800			44701	1691	36977	37000	48172	48172					0.05768084279884533
PYKEKHRKL	9	Unmodified	_PYKEKHRKL_					0	0	0		ENST00000575171.1_1_17:729096-882585:-|nuORF;ENSG00000167693|ENST00000336868|NXN	ENST00000575171.1_1_17:729096-882585:-|nuORF	ENST00000575171.1_1_17:729096-882585:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	599.8565063476562	2	599.85639	1197.69823	-0.17766	-0.00010657	0.50122	0.00030066	0.32356	0.00019409	599.8565104970467	23.928	0.59001	23.928	23.647	24.237	0					24	11	4	0	0	0	0.48818	1	383	383		36.447	7.2767	1	160480			44702	6832	36978	37001	48173	48173					0.1072849127954214
PYKLLTQLTT	10	Unmodified	_PYKLLTQLTT_					0	0	0			REV__ENSG00000168676|ENST00000304372|KCTD19	REV__ENSG00000168676|ENST00000304372|KCTD19	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3417358398438	2	589.344989	1176.67542	-4.3129	-0.0025418	0.73104	0.00043083	-3.5818	-0.0021109	589.3453728975387	144.79	3.9151	143.81	141.71	145.63	-0.97299					242	78	5	0	0	0	0.762	1	12051	12051		23.523	1.8369	1	192050	+		44703	21393	36979	37002	48174	48174					0.09415427371413898
PYKRCFSL	8	Unmodified	_PYKRCFSL_					0	0	0		ENST00000454175.1_1_7:99103050-99103296:+|nuORF	ENST00000454175.1_1_7:99103050-99103296:+|nuORF	ENST00000454175.1_1_7:99103050-99103296:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.2665710449219	2	507.265487	1012.51642	0.14965	7.5915E-05	1.468	0.00074466	1.6176	0.00082058	507.26616198895925	86.781	2.5585	85.35	84.856	87.414	-1.4311					145	50	4	0	0	0	0.50674	1	7521	7521		76.847	20.126	1	1141800			44704	12083	36980	37003	48175	48175					0.010664352623052764
PYKVTQDEL	9	Unmodified	_PYKVTQDEL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;ENST00000494618.1_1_2:232322276-232325237:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	OvCa99_classI_Rep5	1	546.7841796875	2	546.782222	1091.54989	-0.070197	-3.8383E-05	0.48826	0.00026697	0.41806	0.00022859	546.7823661330659	67.428	1.582	67.428	66.816	68.398	0					88	39	5	0	0	0	0.056671	1	6294	6294		114.89	5.4162	1	15250000			44705	3058	36981	37004	48176	48176					0.007777155151643456
PYLAAHRRIH	10	Unmodified	_PYLAAHRRIH_					0	0	0		nc|ENSG00000214022|Q9BWE0|REPIN1;ENSG00000214022|ENST00000489432|REPIN1	nc|ENSG00000214022|Q9BWE0|REPIN1	nc|ENSG00000214022|Q9BWE0|REPIN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	617.3494873046875	2	617.351806	1232.68906	-3.3769	-0.0020847	0.47832	0.00029529	-2.8986	-0.0017894	617.35192186902	152.13	1.4228	150.69	150.33	151.75	-1.435					86	30	4	0	0	0	0.74484	1	15098	15098		25.45	4.5032	1	233800			44706	9161	36982	37005	48177	48177					0.0820214271388977
PYLDQVLLI	9	Unmodified	_PYLDQVLLI_					0	0	0			REV__nc|ENSG00000289758|Q92902-3|HPS1	REV__nc|ENSG00000289758|Q92902-3|HPS1	MULTI-MSMS	OvCa99_classI_Rep5	1	537.3164672851562	2	537.3157	1072.61685	2.0363	0.0010941	-0.22942	-0.00012327	1.8069	0.00097085	537.3154328973161	136.67	0.91095	136.67	136.39	137.3	0					41	18	3	0	0	0	0.28934	1	15921	15921		64.207	5.4253	1	431800	+		44707	17848	36983	37006	48178	48178					0.08344370796953626
PYLFHVVTF	9	Unmodified	_PYLFHVVTF_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000579081.5_2_17:29626598-29701170:+|nuORF	nc|ENSG00000196712|P21359-2|NF1	nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	OvCa99_classI_Rep5	1	561.8038330078125	2	561.80276	1121.59097	2.1415	0.0012031	-0.38117	-0.00021414	1.7603	0.00098893	561.8023963005855	130.01	3.1691	130.01	129.68	132.84	0					110	41	4	0	0	0	0.0078954	7	15087	15087;15114;15138;15143;15168;15211;15217		180.49	75.748	1	2871700			44708	8645	36984	37007	48179;48180;48181;48182;48183;48184;48185	48179					0.035035213453284086
PYLGPLPLLI	10	Unmodified	_PYLGPLPLLI_					0	0	0			REV__ENST00000417036.1_1_3:9404932-9405082:+|nuORF	REV__ENST00000417036.1_1_3:9404932-9405082:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.2702026367188	2	548.344261	1094.67397	1.1994	0.00065768	-2.6111	-0.0014318	-1.4117	-0.00077409	548.3427557000679	138.64	0.4771	138.64	138.4	138.88	0					13	9	2	0	0	0	0.026839	1	16183	16183		35.201	0	1	38059	+		44709	24689	36985	37008	48186	48186					0.13041838073331746
PYLGTKGYAW	10	Unmodified	_PYLGTKGYAW_					0	0	0			REV__nc|ENSG00000102145|P15976-3|GATA1	REV__nc|ENSG00000102145|P15976-3|GATA1	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2899780273438	2	578.295299	1154.57605	-7.6021	-0.0043963	-2.1936	-0.0012685	-9.7957	-0.0056648	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.43592	1	13887	13887		63.306	4.5243	1	1429200	+		44710	17539	36986	37009	48187	48187					0.004940294773177811
PYLGTKGYAW	10	Unmodified	_PYLGTKGYAW_					0	0	0			REV__nc|ENSG00000102145|P15976-3|GATA1	REV__nc|ENSG00000102145|P15976-3|GATA1	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2894287109375	2	578.295299	1154.57605	-7.6653	-0.0044328	-1.8323	-0.0010596	-9.4976	-0.0054924	578.2940529397285	163.97	0.95636	162.57	161.7	162.66	-1.3925					62	21	3	0	0	0	0.58282	1	14283	14283		44.117	3.5442	1	144290	+		44711	17539	36986	37009	48188	48188					0.004940294773177811
PYLGWCWWP	9	Unmodified	_PYLGWCWWP_					0	0	0			REV__ENST00000317578.6_1_19:46268491-46268728:-|nuORF	REV__ENST00000317578.6_1_19:46268491-46268728:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	605.2489013671875	2	604.273312	1206.53207	-5.7267	-0.0034605	-0.43261	-0.00026142	-6.1593	-0.0037219	604.2727752477975	160.21	0.22063	158.6	158.45	158.67	-1.6101					7	4	2	0	0	0	0.027462	1	15824	15824		29.842	9.8448	1	5953.5	+		44712	24414	36987	37010	48189	48189					-0.06293278220664433
PYLHTEVL	8	Unmodified	_PYLHTEVL_					0	0	0		tr|A0A553SG13|A0A553SG13_NIACIPyrroline-5-carboxylatereductaseOS=NialliacirculansOX=1397GN=proCPE=3SV=1	tr|A0A553SG13|A0A553SG13_NIACIPyrroline-5-carboxylatereductaseOS=NialliacirculansOX=1397GN=proCPE=3SV=1	tr|A0A553SG13|A0A553SG13_NIACIPyrroline-5-carboxylatereductaseOS=NialliacirculansOX=1397GN=proCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.26483154296875	2	486.263468	970.512382	1.1545	0.00056141	2.1439	0.0010425	3.2985	0.0016039	486.26439439503525	61.985	2.2064	58.916	57.872	60.078	-3.0685					97	53	2	0	0	0	0.74679	1	2268	2268		28.254	4.0515	1	48498			44713	33103	36988	37011	48190	48190					0.025946690402406603
PYLKIFRKK	9	Unmodified	_PYLKIFRKK_					0	0	0			REV__tr|A0A7D6VNL6|A0A7D6VNL6_9CLOTAcyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13080PE=4SV=1	REV__tr|A0A7D6VNL6|A0A7D6VNL6_9CLOTAcyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13080PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	597.3038940429688	2	596.881876	1191.7492	1.5624	0.00093254	0.26254	0.00015671	1.8249	0.0010893	596.8818784895873	119.08	0.74661	119.08	118.72	119.47	0					36	15	3	0	0	0	0.027462	1	13701	13701		24.203	7.7296	1	574090	+		44714	31192	36989	37012	48191	48191					0.16099440324387615
PYLLSPPPVP	10	Unmodified	_PYLLSPPPVP_					0	0	0		ENST00000570439.1_1_17:7252330-7252585:+|nuORF	ENST00000570439.1_1_17:7252330-7252585:+|nuORF	ENST00000570439.1_1_17:7252330-7252585:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	540.309326171875	2	540.310418	1078.60628	-2.1488	-0.001161	-1.0685	-0.00057733	-3.2173	-0.0017384	540.3097600180628	118.45	2.7194	118.3	117.89	120.61	-0.14755					130	54	4	0	0	0	0.41846	1	11451	11451		65.803	0	1	293380			44715	13897	36990	37013	48192	48192					0.07012388142516102
PYLMMWTSL	9	Unmodified	_PYLMMWTSL_					0	0	0		ENST00000528501.5_1_11:47834563-47834888:-|nuORF	ENST00000528501.5_1_11:47834563-47834888:-|nuORF	ENST00000528501.5_1_11:47834563-47834888:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	570.8230590820312	2	571.274664	1140.53477	-1.4462	-0.0008262	0.95587	0.00054607	-0.49037	-0.00028014	571.2753538397994	84.593	0.49361	82.332	82.162	82.655	-2.261					14	9	2	0	0	0	0.027426	1	4898	4898		53.351	12.573	1	32953			44716	13256	36991	37014	48193	48193					-0.02987190878002366
PYLMMWTSL	9	Unmodified	_PYLMMWTSL_					0	0	0		ENST00000528501.5_1_11:47834563-47834888:-|nuORF	ENST00000528501.5_1_11:47834563-47834888:-|nuORF	ENST00000528501.5_1_11:47834563-47834888:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	570.8237915039062	2	571.274664	1140.53477	1.1227	0.00064138	0.56716	0.00032401	1.6899	0.00096538	571.2751827250121	84.895	0.38855	82.249	82.072	82.461	-2.6463					13	7	3	0	0	0	0.027433	1	7118	7118		47.916	0	1	21676			44717	13256	36991	37014	48194	48194					-0.02987190878002366
PYLMSMEQQ	9	Unmodified	_PYLMSMEQQ_					0	0	0			REV__KIAA0408|p.K370Nfs*28|1|0.03|ENSG00000189367|chr6:127447209-127447210|-/ACTCGGTCTCCAGTCATGCTCGTGGAGCATA|frameshift_variant	REV__KIAA0408|p.K370Nfs*28|1|0.03|ENSG00000189367|chr6:127447209-127447210|-/ACTCGGTCTCCAGTCATGCTCGTGGAGCATA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.2959594726562	2	563.74901	1125.48347	1.3251	0.00074702	-1.9888	-0.0011212	-0.66368	-0.00037415	564.2491416285857	142.29	0.15071	142.29	142.18	142.34	0					4	2	2	0	0	0	0.027462	1	16616	16616		38.806	0	1	12579	+		44718	22774	36992	37015	48195	48195					-0.0742555964272924
PYLRIPRSVL	10	Unmodified	_PYLRIPRSVL_					0	0	0			REV__LAMA2|p.W2357L|1|0.11|ENSG00000196569|chr6:129464367-129464367|G/T|missense_variant	REV__LAMA2|p.W2357L|1|0.11|ENSG00000196569|chr6:129464367-129464367|G/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	606.81689453125	2	607.374415	1212.73428	1.7141	0.0010411	4.4597	0.0027087	6.1738	0.0037498	607.3771348295959	96.952	0.59195	94.526	94.271	94.863	-2.4256					17	11	2	0	0	0	0.026994	1	8608	8608		40.778	5.1599	1	25870	+		44719	28613	36993	37016	48196	48196					0.13641948456415776
PYLYPHSL	8	Unmodified	_PYLYPHSL_					0	0	0		ENST00000520572.1_1_8:143787902-143788028:-|nuORF	ENST00000520572.1_1_8:143787902-143788028:-|nuORF	ENST00000520572.1_1_8:143787902-143788028:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.2795104980469	2	495.258185	988.501818	-0.011834	-5.8606E-06	-0.9921	-0.00049135	-1.0039	-0.00049721	495.2574176196803	83.525	0.63258	80.862	80.534	81.167	-2.6629					17	12	2	0	0	0	0.028476	1	6971	6971		35.201	3.2459	1	13950			44720	13108	36994	37017	48197	48197					0.007106863857984536
PYLYPHSL	8	Unmodified	_PYLYPHSL_					0	0	0		ENST00000520572.1_1_8:143787902-143788028:-|nuORF	ENST00000520572.1_1_8:143787902-143788028:-|nuORF	ENST00000520572.1_1_8:143787902-143788028:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	495.258185	988.501818	0.69227	0.00034285	0.73028	0.00036168	1.4225	0.00070453	495.25845449256946	82.352	0.73048	80.731	80.31	81.041	-1.6206	-0.082176	0.0014432	NaN	35.201	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13791			44721	13108	36994	37017							0.007106863857984536
PYLYPHSL	8	Unmodified	_PYLYPHSL_					0	0	0		ENST00000520572.1_1_8:143787902-143788028:-|nuORF	ENST00000520572.1_1_8:143787902-143788028:-|nuORF	ENST00000520572.1_1_8:143787902-143788028:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	495.258185	988.501818	-1.1555	-0.00057226	-1.5679	-0.00077652	-2.7234	-0.0013488	495.2567652938771	83.143	0.84068	80.846	80.381	81.222	-2.2963	0.033138	-0.00083318	NaN	35.201	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24321			44722	13108	36994	37017							0.007106863857984536
PYMAKFVVF	9	Unmodified	_PYMAKFVVF_					0	0	0		ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;nc|ENSG00000151150|Q12955-7|ANK3	ENSG00000145362|ENST00000357077|ANK2;ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-MSMS	OvCa99_classI_Rep5	1	551.2949829101562	2	551.293714	1100.57287	2.1727	0.0011978	-0.199	-0.00010971	1.9737	0.0010881	551.2934410916839	121.57	2.3568	121.57	121.34	123.69	0					69	50	2	0	0	0	0.11171	2	13982	13982;14006		94.006	8.5128	1	1471700			44723	5537;5218	36995	37018	48198;48199	48198					0.026610630989580386
PYMRGFLN	8	Unmodified	_PYMRGFLN_					0	0	0		ENSG00000118276|ENST00000306851|B4GALT6;nc|ENSG00000118276|Q9UBX8-2|B4GALT6	ENSG00000118276|ENST00000306851|B4GALT6	ENSG00000118276|ENST00000306851|B4GALT6	MULTI-MSMS	OvCa99_classI_Rep5	1	499.2495422363281	2	499.249837	996.485122	0.95386	0.00047622	-2.7785	-0.0013872	-1.8247	-0.00091097	499.24831202573387	155.81	2.9765	155.81	154.72	157.7	0					141	58	3	0	0	0	0.64377	1	18334	18334		54.765	4.7401	1	309150			44724	3298	36996	37019	48200	48200					-0.013261377717867617
PYMVQGIVAL	10	Unmodified	_PYMVQGIVAL_					0	0	0		tr|A0A7D6ZQT8|A0A7D6ZQT8_9CLOTPTSgalactitoltransportersubunitIICOS=ClostridiumintestinaleOX=36845GN=HZF06_01685PE=4SV=1	tr|A0A7D6ZQT8|A0A7D6ZQT8_9CLOTPTSgalactitoltransportersubunitIICOS=ClostridiumintestinaleOX=36845GN=HZF06_01685PE=4SV=1	tr|A0A7D6ZQT8|A0A7D6ZQT8_9CLOTPTSgalactitoltransportersubunitIICOS=ClostridiumintestinaleOX=36845GN=HZF06_01685PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	546.2526245117188	2	545.801903	1089.58925	-1.5108	-0.00082461	3.1169	0.0017012	1.606	0.00087657	545.8036034024651	120.02	0.44446	119.85	119.55	119.99	-0.17138					13	8	2	0	0	0	0.026871	1	11562	11562		45.952	7.1458	1	28162			44725	35707	36997	37020	48201	48201					0.048041442650628596
PYNEVLSFC	9	Unmodified	_PYNEVLSFC_					0	0	0		ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	MULTI-MSMS	OvCa9_classI_Rep3	3	536.2467651367188	2	536.244418	1070.47428	0.97643	0.00052361	1.5461	0.00082907	2.5225	0.0013527	536.2452380983605	114.48	3.218	113.43	113.05	116.27	-1.055					122	64	2	0	0	0	0.27001	1	8508	8508		66.429	0	1	980200			44726	1708	36998	37021	48202	48202					-0.058135849367545234
PYNEVLSFC	9	Unmodified	_PYNEVLSFC_					0	0	0		ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	ENSG00000084073|ENST00000372759|ZMPSTE24	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.2459106445312	2	536.244418	1070.47428	-0.42872	-0.0002299	2.9982	0.0016078	2.5695	0.0013779	536.2460282370151	114.83	3.7432	113.44	113.1	116.84	-1.3977					114	72	2	0	0	0	0.35444	1	10695	10695		56.721	1.2168	1	971930			44727	1708	36998	37021	48203	48203					-0.058135849367545234
PYNHQHEYF	9	Unmodified	_PYNHQHEYF_					0	0	0		ENSG00000134824|ENST00000278840|FADS2;nc|ENSG00000134824|O95864-4|FADS2;nc|ENSG00000134824|O95864-2|FADS2;nc|ENSG00000134824|O95864-3|FADS2	ENSG00000134824|ENST00000278840|FADS2	ENSG00000134824|ENST00000278840|FADS2	MULTI-MSMS	OvCa99_classI_Rep5	1	617.7692260742188	2	617.767437	1233.52032	-0.7299	-0.00045091	0.40027	0.00024728	-0.32963	-0.00020363	617.7676737823849	49.345	0.8686	49.345	49.119	49.988	0					46	19	4	0	0	0	0.1944	1	3677	3677		77.318	30.861	1	1265200			44728	4334	36999	37022	48204	48204					-0.08709803710303277
PYNPLWAQL	9	Unmodified	_PYNPLWAQL_					0	0	0		FNIP2|p.D1024Efs*59|1|0.07|ENSG00000052795|chr4:158891567-158891568|-/AG|frameshift_variant;ENSG00000052795|ENST00000264433|FNIP2;nc|ENSG00000052795|Q9P278-2|FNIP2;nc|ENSG00000217128|Q8TF40-2|FNIP1;nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000217128|ENST00000510461|FNIP1	FNIP2|p.D1024Efs*59|1|0.07|ENSG00000052795|chr4:158891567-158891568|-/AG|frameshift_variant;nc|ENSG00000217128|Q8TF40-3|FNIP1	nc|ENSG00000217128|Q8TF40-3|FNIP1	MULTI-MSMS	OvCa99_classI_Rep5	1	551.2908935546875	2	551.290017	1100.56548	0.49777	0.00027441	1.6102	0.00088766	2.1079	0.0011621	551.2906448953081	140.61	0.9735	140.61	140.31	141.29	0					65	19	5	0	0	0	0.19758	1	16431	16431		76.774	23.837	1	472680			44729	9216;1194	37000	37023	48205	48205					0.019220468228922982
PYNQLFINN	9	Unmodified	_PYNQLFINN_					0	0	0		ENSG00000137124|ENST00000377698|ALDH1B1	ENSG00000137124|ENST00000377698|ALDH1B1	ENSG00000137124|ENST00000377698|ALDH1B1	MULTI-MSMS	OvCa99_classI_Rep5	1	561.7835083007812	2	561.782556	1121.55056	1.9752	0.0011096	1.4609	0.0008207	3.4361	0.0019303	561.7834930140825	103.13	0.66403	103.13	102.85	103.51	0					35	15	3	0	0	0	0.46377	1	11534	11534		45.952	1.8352	1	908990			44730	4560	37001	37024	48206	48206					-0.005354450451250159
PYPFKHVAL	9	Unmodified	_PYPFKHVAL_					0	0	0		ENST00000282488.11_1_3:152182726-152182906:+|nuORF	ENST00000282488.11_1_3:152182726-152182906:+|nuORF	ENST00000282488.11_1_3:152182726-152182906:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.7843627929688	2	536.302927	1070.5913	1.1751	0.00063019	0.35788	0.00019193	1.5329	0.00082212	536.8037812319786	105.79	0.26275	105.79	105.66	105.92	0					8	5	2	0	0	0	0.027462	1	11896	11896		35.201	5.3592	1	175900			44731	10058	37002	37025	48207	48207					0.05882941065169689
PYPKETDVHS	10	Unmodified	_PYPKETDVHS_					0	0	0			REV__ASXL3|p.V876Cfs*59|1|0.4|ENSG00000141431|chr18:33740022-33740022|A/-|frameshift_variant	REV__ASXL3|p.V876Cfs*59|1|0.4|ENSG00000141431|chr18:33740022-33740022|A/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.2724609375	2	586.782753	1171.55095	1.162	0.00068187	-0.5094	-0.0002989	0.65265	0.00038296	586.7828024398451	146.69	0.58989	146.69	146.23	146.82	0					14	11	2	0	0	0	0.026782	1	17110	17110		37.812	0	1	25567	+		44732	15673	37003	37026	48208	48208					-0.027960701159145174
PYPLKDKL	8	Unmodified	_PYPLKDKL_					0	0	0			REV__ENSG00000176153|ENST00000389614|GPX2	REV__ENSG00000176153|ENST00000389614|GPX2	MULTI-MSMS	OvCa99_classI_Rep5	1	488.7962646484375	2	487.289485	972.564418	0.2912	0.0001419	2.2265	0.001085	2.5177	0.0012269	487.29018711585417	101.87	1.6129	101.87	101.06	102.68	0					91	37	5	0	0	0	0.45246	1	11311	11311		82.305	5.4584	1	6372700	+		44733	21933	37004	37027	48209	48209					0.07703832454001258
PYPLSPFFDL	10	Unmodified	_PYPLSPFFDL_					0	0	0			REV__L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|154|2|anti-sense	REV__L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|154|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	597.7762451171875	2	598.305332	1194.59611	0.12338	7.3818E-05	1.1274	0.00067451	1.2507	0.00074833	598.3050434587236	104.71	0.73432	102.59	102.11	102.85	-2.1192					28	13	3	0	0	0	0.026639	1	9432	9432		53.351	0	1	20798	+		44734	28354	37005	37028	48210	48210					0.006597804172997712
PYPRGLPK	8	Unmodified	_PYPRGLPK_					0	0	0			REV__ENST00000484214.1_1_1:156263748-156265436:-|nuORF	REV__ENST00000484214.1_1_1:156263748-156265436:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	464.2735595703125	2	464.27417	926.533787	1.1441	0.00053117	3.1773	0.0014751	4.3214	0.0020063	464.2755469000295	150.52	0.54913	150.52	150.24	150.79	0					16	10	2	0	0	0	0.71369	1	17627	17627		40.573	8.6178	1	47410	+		44735	26545	37006	37029	48211	48211					0.06758098859609163
PYPYDMMALV	10	Unmodified	_PYPYDMMALV_					0	0	0			REV__ENST00000482088.5_1_9:140007335-140007673:-|nuORF	REV__ENST00000482088.5_1_9:140007335-140007673:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	600.2713012695312	2	600.277403	1198.54025	-4.8728	-0.002925	-4.0228	-0.0024148	-8.8955	-0.0053398	600.2748840186918	159.86	2.843	158.53	158.01	160.85	-1.3316					169	56	5	0	0	0	0.59639	1	13864	13864		42.474	1.6963	1	277240	+		44736	21980	37007	37030	48212	48212					-0.05107512086215138
PYRCLLHSL	9	Unmodified	_PYRCLLHSL_					0	0	0		ENSG00000234224|ENST00000455783|TMEM229A	ENSG00000234224|ENST00000455783|TMEM229A	ENSG00000234224|ENST00000455783|TMEM229A	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.208984375	2	551.297319	1100.58008	0.089426	4.9301E-05	0.7858	0.00043321	0.87522	0.00048251	551.2977372778364	71.908	0.37637	71.908	71.668	72.045	0					13	8	2	0	0	0	0.027462	1	6949	6949		45.952	3.4775	1	437340			44737	9298	37008	37031	48213	48213					0.033817956993971166
PYRCLLHSL	9	Unmodified	_PYRCLLHSL_					0	0	0		ENSG00000234224|ENST00000455783|TMEM229A	ENSG00000234224|ENST00000455783|TMEM229A	ENSG00000234224|ENST00000455783|TMEM229A	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	551.297319	1100.58008	-0.1467	-8.0873E-05	3.1491	0.0017361	3.0024	0.0016552	551.2990501393276	74.933	0.72278	71.702	71.483	72.205	-3.2308	-0.10291	0.0020171	NaN	55.504	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56229			44738	9298	37008	37031							0.033817956993971166
PYRGVVILD	9	Unmodified	_PYRGVVILD_					0	0	0			REV__DDB2|p.N349D|1|0.06|ENSG00000134574|chr11:47237858-47237858|A/G|missense_variant	REV__DDB2|p.N349D|1|0.06|ENSG00000134574|chr11:47237858-47237858|A/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.7807006835938	2	516.297842	1030.58113	0.47252	0.00024396	-1.039	-0.00053642	-0.56644	-0.00029245	516.2969084310407	111.4	0.6891	111.27	110.98	111.67	-0.13961					19	13	2	0	0	0	0.027462	1	10555	10555		37.159	0	1	16687	+		44739	16275	37009	37032	48214	48214					0.06706333339934645
PYRHQLLKL	9	Unmodified	_PYRHQLLKL_					0	0	0			REV__ENST00000490209.5_1_6:31655268-31655864:-|nuORF	REV__ENST00000490209.5_1_6:31655268-31655864:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.3071899414062	2	584.353483	1166.69241	0.90895	0.00053115	0.025713	1.5026E-05	0.93466	0.00054617	584.3533567209952	124.58	0.73887	124.58	124.24	124.98	0					27	15	3	0	0	0	0.027462	1	14345	14345		21.96	3.6355	1	412320	+		44740	23155	37010	37033	48215	48215					0.11573392767877522
PYRLIFEKF	9	Unmodified	_PYRLIFEKF_					0	0	0		PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant;PRKDC|p.P3973Afs*40|1|0.09|ENSG00000253729|chr8:47777811-47777812|-/C|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant	PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	606.8444213867188	2	606.842416	1211.67028	2.5162	0.0015269	-0.13467	-8.1722E-05	2.3815	0.0014452	606.8420564186123	100.43	1.1672	100.43	100.15	101.32	0					59	27	4	0	0	0	0.10188	1	11135	11135		80.455	32.797	1	2584400			44741	9437	37011	37034	48216	48216					0.07291168299434503
PYRLIFEKF	9	Unmodified	_PYRLIFEKF_					0	0	0		PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant;PRKDC|p.P3973Afs*40|1|0.09|ENSG00000253729|chr8:47777811-47777812|-/C|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant	PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	404.89862060546875	3	404.89737	1211.67028	3.5841	0.0014512	-1.162	-0.00047049	2.4221	0.0009807	404.8967029780124	100.4	0.8687	100.4	100.24	101.11	0					52	20	4	0	0	0	0.29519	1	11144	11144		63.534	3.4156	1	1597100			44742	9437	37011	37034	48217	48217					0.07291168299434503
PYRSAKTVI	9	Unmodified	_PYRSAKTVI_					0	0	0			REV__DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant	REV__DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.3256225585938	2	517.803291	1033.59203	-0.55339	-0.00028655	1.6362	0.00084723	1.0828	0.00056068	517.8040923329589	84.372	0.71786	82.111	81.79	82.508	-2.261					24	14	2	0	0	0	0.027461	1	4849	4849		49.442	0	1	62222	+		44743	16314	37012	37035	48218	48218					0.07657735714224145
PYSEKMTVLF	10	Unmodified	_PYSEKMTVLF_					0	0	0		ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	MULTI-MSMS	OvCa99_classI_Rep5	1	607.8134155273438	2	607.809925	1213.6053	2.6093	0.0015859	-0.75756	-0.00046045	1.8517	0.0011255	607.8093485606556	107.5	0.50159	107.5	107.31	107.82	0					25	11	3	0	0	0	0.26424	1	12133	12133		85.161	10.906	1	913700			44744	8900	37013	37036	48219	48219					0.007038057113049945
PYSLQIWDT	9	Unmodified	_PYSLQIWDT_					0	0	0		RAB36|p.T210Sfs*39|1|0.09|ENSG00000100228|chr22:23158027-23158028|-/G|frameshift_variant;nc|ENSG00000100228|O95755-2|RAB36;ENSG00000100228|ENST00000263116|RAB36	RAB36|p.T210Sfs*39|1|0.09|ENSG00000100228|chr22:23158027-23158028|-/G|frameshift_variant	RAB36|p.T210Sfs*39|1|0.09|ENSG00000100228|chr22:23158027-23158028|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	561.7772827148438	2	561.776939	1121.53933	-1.3592	-0.00076357	4.1065	0.002307	2.7473	0.0015434	561.7792444049404	136.22	0.83698	135.12	134.85	135.69	-1.1076					32	16	3	0	0	0	0.5811	1	11062	11062		34.173	5.0025	1	51102			44745	2031	37014	37037	48220	48220					-0.01658267139259806
PYSMTFSTFV	10	Unmodified	_PYSMTFSTFV_					0	0	0			REV__ENST00000257570.9_1_12:121458172-121458310:-|nuORF	REV__ENST00000257570.9_1_12:121458172-121458310:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	590.2684936523438	2	590.273175	1178.5318	-6.4648	-0.003816	-1.1024	-0.00065072	-7.5672	-0.0044667	590.272448811586	160.41	2.659	158.8	158.24	160.9	-1.6101					174	63	4	0	0	0	0.58282	1	15847	15847		44.117	0	1	264810	+		44746	23901	37015	37038	48221	48221					-0.050327427311685824
PYSTQYLAAAA	11	Unmodified	_PYSTQYLAAAA_					0	0	0			REV__ENSG00000169840|ENST00000302945|GSX1	REV__ENSG00000169840|ENST00000302945|GSX1	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.2901611328125	2	578.287671	1154.56079	2.6605	0.0015385	0.16844	9.7409E-05	2.8289	0.0016359	578.2875433162809	133.74	3.4984	132.22	131.46	134.96	-1.5257					171	70	3	0	0	0	0.46066	1	12908	12908		56.721	3.7844	1	165290	+		44747	21487	37016	37039	48222	48222					-0.010308821105354582
PYTCHLCR	8	Unmodified	_PYTCHLCR_					0	0	0		nc|ENSG00000214534|A8MWA4|ZNF705EP	nc|ENSG00000214534|A8MWA4|ZNF705EP	nc|ENSG00000214534|A8MWA4|ZNF705EP	MULTI-MSMS	OvCa9_classI_Rep3	3	496.7271728515625	2	496.725672	991.436791	2.0848	0.0010356	0.64738	0.00032157	2.7321	0.0013571	496.7256667466894	56.454	1.7894	53.303	52.476	54.265	-3.1504					88	62	2	0	0	0	0.74595	1	1634	1634		14.664	0.52697	1	26855			44748	15311	37017	37040	48223	48223					-0.059269546833434106
PYTDQHSHL	9	Unmodified	_PYTDQHSHL_					0	0	0			REV__ENST00000462375.5_1_9:134385592-134386855:+|nuORF	REV__ENST00000462375.5_1_9:134385592-134386855:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	549.2544555664062	2	549.254163	1096.49377	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.98	1	137.45	136.95	137.95	-1.5284								0	0	0	0.21857	1	13538	13538		23.523	0	1		+		44749	18963	37018	37041	48224	48224					-0.05061492601635109
PYTHFNQLNL	10	Unmodified	_PYTHFNQLNL_					0	0	0			REV__tr|A0A553SGV7|A0A553SGV7_NIACI5-methylthioadenosine/S-adenosylhomocysteinedeaminaseOS=NialliacirculansOX=1397GN=mtaDPE=3SV=1	REV__tr|A0A553SGV7|A0A553SGV7_NIACI5-methylthioadenosine/S-adenosylhomocysteinedeaminaseOS=NialliacirculansOX=1397GN=mtaDPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	622.8670654296875	2	623.814387	1245.61422	0.76724	0.00047862	3.8549	0.0024047	4.6221	0.0028834	623.8153837077982	132.2	0.24954	131.08	130.89	131.14	-1.1249					6	4	2	0	0	0	0.026968	1	10540	10540		44.377	13.874	1	6084.6	+		44750	29743	37019	37042	48225	48225					0.0012391539200962143
PYTPLEKKL	9	Unmodified	_PYTPLEKKL_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1;nc|ENSG00000138688|Q2LD37-6|BLTP1;KIAA1109-FSIP2|1|fusion;nc|ENSG00000138688|Q2LD37-2|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.3192138671875	2	544.82115	1087.62775	-0.55922	-0.00030467	-3.9454	-0.0021495	-4.5046	-0.0024542	544.8189757036373	62.09	1.5033	58.632	58.382	59.885	-3.4577					52	30	3	0	0	0	0.027448	1	4442	4442		63.306	0	1	249120			44751	4713	37020	37043	48226	48226					0.08743773171227076
PYTSPHPIFP	10	Unmodified	_PYTSPHPIFP_					0	0	0		ENST00000553980.1_2_14:21561418-21561640:-|nuORF	ENST00000553980.1_2_14:21561418-21561640:-|nuORF	ENST00000553980.1_2_14:21561418-21561640:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2900390625	2	578.295299	1154.57605	-7.6021	-0.0043963	-2.1936	-0.0012685	-9.7957	-0.0056648	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.7759	1	13618	13618		21.96	0	1	1429200			44752	13629	37021	37044	48227	48227					0.004940294773177811
PYTVTTEPL	9	Unmodified	_PYTVTTEPL_					0	0	0			REV__ENST00000287844.6_1_7:150922068-150924280:-|nuORF	REV__ENST00000287844.6_1_7:150922068-150924280:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.6891174316406	2	510.76604	1019.51753	0.65998	0.0003371	0.82882	0.00042333	1.4888	0.00076043	510.76505409253343	160.43	0.24738	160.43	160.21	160.45	0					6	4	2	0	0	0	0.027462	1	18792	18792		24.203	14.018	1	10573	+		44753	24144	37022	37045	48228	48228					0.008549281121759122
PYTYRELRN	9	Unmodified	_PYTYRELRN_					0	0	0		ENSG00000138760|ENST00000264896|SCARB2	ENSG00000138760|ENST00000264896|SCARB2	ENSG00000138760|ENST00000264896|SCARB2	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3146362304688	2	606.312012	1210.60947	-0.36546	-0.00022158	3.408	0.0020663	3.0426	0.0018447	606.313846558734	100.21	4.8548	97.886	97.315	102.17	-2.3253					183	94	4	0	0	0	0.35444	1	8951	8951		56.721	12.344	1	584000			44754	4724	37023	37046	48229	48229					0.012590312492420708
PYTYRELRN	9	Unmodified	_PYTYRELRN_					0	0	0		ENSG00000138760|ENST00000264896|SCARB2	ENSG00000138760|ENST00000264896|SCARB2	ENSG00000138760|ENST00000264896|SCARB2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	606.312012	1210.60947	-1.0219	-0.00061957	3.9795	0.0024128	2.9576	0.0017932	606.3143332952388	98.752	4.6566	97.859	97.168	101.82	-0.89306	-0.042674	0.00068511	NaN	56.721	181	93	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	425030			44755	4724	37023	37046							0.012590312492420708
PYVCYDPKS	9	Unmodified	_PYVCYDPKS_					0	0	0		ENSG00000213462|ENST00000394323|ERV3-1	ENSG00000213462|ENST00000394323|ERV3-1	ENSG00000213462|ENST00000394323|ERV3-1	MULTI-MSMS	OvCa9_classI_Rep3	3	536.2459716796875	2	536.244418	1070.47428	0.97643	0.00052361	1.5461	0.00082907	2.5225	0.0013527	536.2452380983605	114.48	3.218	113.43	113.05	116.27	-1.055					122	64	2	0	0	0	0.40667	1	8526	8526		51.335	1.3109	1	980200			44756	9130	37024	37047	48230	48230					-0.058135849367545234
PYVIIPAIW	9	Unmodified	_PYVIIPAIW_					0	0	0			REV__tr|A0A7D7A2V9|A0A7D7A2V9_9CLOTProbablebutyratekinaseOS=ClostridiumintestinaleOX=36845GN=bukPE=3SV=1	REV__tr|A0A7D7A2V9|A0A7D7A2V9_9CLOTProbablebutyratekinaseOS=ClostridiumintestinaleOX=36845GN=bukPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.8555908203125	2	536.315503	1070.61645	-1.5237	-0.00081717	-4.4225	-0.0023718	-5.9462	-0.003189	536.3130849309174	103.64	0.978	103.64	103.39	104.36	0					42	22	2	0	0	0	0.027462	1	11629	11629		29.842	3.1486	1	736130	+		44757	32554	37025	37048	48231	48231					0.083969958677244
PYVNNVPHL	9	Unmodified	_PYVNNVPHL_					0	0	0		ENSG00000166986|ENST00000262027|MARS1;ENST00000447721.6_1_12:57881873-57905922:+|nuORF;nc|ENSG00000166986|P56192-2|MARS1	ENSG00000166986|ENST00000262027|MARS1	ENSG00000166986|ENST00000262027|MARS1	MULTI-MSMS	OvCa99_classI_Rep5	1	526.7822265625	2	526.779816	1051.54508	2.0889	0.0011004	0.28248	0.0001488	2.3714	0.0012492	526.7796733529196	85.975	1.3462	85.975	85.585	86.931	0					90	32	4	0	0	0	0.0078954	1	9047	9047		180.49	47.026	1	6517200			44758	6744	37026	37049	48232	48232					0.021368761630810695
PYVNRMAF	8	Unmodified	_PYVNRMAF_					0	0	0			REV__ENSG00000150527|ENST00000640607|MIA2	REV__ENSG00000150527|ENST00000640607|MIA2	MULTI-MSMS	OvCa99_classI_Rep5	1	499.249267578125	2	499.249837	996.485122	2.0486	0.0010228	-3.1483	-0.0015718	-1.0997	-0.00054904	499.24810602999514	120.28	3.1366	120.28	120	123.14	0					173	70	4	0	0	0	0.61706	1	13805	13805		60.404	5.639	1	6606300	+		44759	20192	37027	37050	48233	48233					-0.013261377717981304
PYVQLEPLL	9	Unmodified	_PYVQLEPLL_					0	0	0			REV__ENST00000596302.5_1_19:21579921-21580011:+|nuORF	REV__ENST00000596302.5_1_19:21579921-21580011:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.3088989257812	2	536.307875	1070.6012	1.7457	0.00093624	1.1787	0.00063214	2.9244	0.0015684	536.3083292330745	135.91	1.0772	134.37	133.96	135.03	-1.5437					40	21	3	0	0	0	0.19758	1	13191	13191		76.774	10.345	1	50131	+		44760	27993	37028	37051	48234	48234					0.06872084279893897
PYVVNITCFR	10	Unmodified	_PYVVNITCFR_					0	0	0		ENSG00000107077|ENST00000381309|KDM4C;nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENST00000495890.1_1_9:7049197-7103927:+|nuORF	ENSG00000107077|ENST00000381309|KDM4C	ENSG00000107077|ENST00000381309|KDM4C	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3153686523438	2	606.315709	1210.61686	0.11107	6.7344E-05	-2.9053	-0.0017615	-2.7942	-0.0016942	606.3137213799537	91.429	2.9368	88.886	88.04	90.976	-2.5425					138	57	4	0	0	0	0.49049	1	7893	7893		55.504	4.1688	1	307050			44761	2584	37029	37052	48235	48235					0.019980475252623364
PYVVNITCFR	10	Unmodified	_PYVVNITCFR_					0	0	0		ENSG00000107077|ENST00000381309|KDM4C;nc|ENSG00000293552|Q9H3R0-2|KDM4C;ENST00000495890.1_1_9:7049197-7103927:+|nuORF	ENSG00000107077|ENST00000381309|KDM4C	ENSG00000107077|ENST00000381309|KDM4C	MULTI-MATCH	OvCa9_classI_Rep3	3		2	606.315709	1210.61686	0.92371	0.00056006	-3.7675	-0.0022843	-2.8438	-0.0017243	606.3131511310659	91.044	2.1122	89.02	88.113	90.225	-2.0241	0.066886	-0.0005645	NaN	55.504	126	41	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	348940			44762	2584	37029	37052							0.019980475252623364
PYWNTFSL	8	Unmodified	_PYWNTFSL_					0	0	0		ENSG00000064932|ENST00000361757|SBNO2	ENSG00000064932|ENST00000361757|SBNO2	ENSG00000064932|ENST00000361757|SBNO2	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.303466796875	2	514.247818	1026.48108	1.3222	0.00067993	-1.938	-0.00099661	-0.61582	-0.00031668	514.2469729462761	120.06	0.5899	119.03	118.72	119.31	-1.0271					23	11	3	0	0	0	0.028476	1	9122	9122		35.618	0	1	23531			44763	1308	37030	37053	48236	48236					-0.031099039938681017
PYYLTQKTF	9	Unmodified	_PYYLTQKTF_					0	0	0		nc|ENSG00000196876|Q9UQD0-4|SCN8A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A	nc|ENSG00000196876|Q9UQD0-4|SCN8A	nc|ENSG00000196876|Q9UQD0-4|SCN8A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	579.8358764648438	2	580.802957	1159.59136	-0.83242	-0.00048347	0.46607	0.0002707	-0.36634	-0.00021277	580.803241174144	102.88	0.62801	100.68	100.46	101.09	-2.1994					17	11	2	0	0	0	0.027462	1	9252	9252		25.45	8.0852	1	22272			44764	8655	37031	37054	48237	48237					0.017948962745094832
PYYLTQKTF	9	Unmodified	_PYYLTQKTF_					0	0	0		nc|ENSG00000196876|Q9UQD0-4|SCN8A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A	nc|ENSG00000196876|Q9UQD0-4|SCN8A	nc|ENSG00000196876|Q9UQD0-4|SCN8A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	580.802957	1159.59136	-1.5301	-0.00088866	-2.0691	-0.0012017	-3.5991	-0.0020904	581.3029298077201	101.75	0.44544	100.99	100.67	101.11	-0.76401	0.18388	-0.00256	NaN	25.45	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16422			44765	8655	37031	37054							0.017948962745094832
PYYLTQKTF	9	Unmodified	_PYYLTQKTF_					0	0	0		nc|ENSG00000196876|Q9UQD0-4|SCN8A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A	nc|ENSG00000196876|Q9UQD0-4|SCN8A	nc|ENSG00000196876|Q9UQD0-4|SCN8A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	580.802957	1159.59136	-1.6361	-0.00095023	0.96158	0.00055849	-0.67449	-0.00039174	580.8031021292152	102.27	0.36318	100.74	100.58	100.95	-1.5211	-0.059126	0.00096037	NaN	25.45	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21796			44766	8655	37031	37054							0.017948962745094832
QAAAAGIFLNN	11	Unmodified	_QAAAAGIFLNN_					0	0	0		ENSG00000078237|ENST00000179259|TIGAR	ENSG00000078237|ENST00000179259|TIGAR	ENSG00000078237|ENST00000179259|TIGAR	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.3214111328125	2	545.288005	1088.56146	0.17995	9.8123E-05	3.2425	0.0017681	3.4224	0.0018662	545.7902387181238	46.158	0.65723	46.158	45.844	46.501	0					29	14	4	0	0	0	0.025457	1	3227	3227		29.17	0	1	165390			44767	1590	37032	37055	48238	48238					0.020719573291671622
QAADHRLR	8	Unmodified	_QAADHRLR_					0	0	0		tr|A0A553SRA0|A0A553SRA0_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00690PE=3SV=1	REV__ENSG00000179044|ENST00000314586|EXOC3L1;tr|A0A553SRA0|A0A553SRA0_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00690PE=3SV=1	tr|A0A553SRA0|A0A553SRA0_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00690PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	483.764892578125	2	483.765032	965.515511	-0.41278	-0.00019969	-0.12933	-6.2567E-05	-0.54211	-0.00026225	483.76496559732675	24.213	0.90203	24.213	24.036	24.938	0					42	17	4	0	0	0	0.64026	1	436	436		55.504	13.108	1	1773100			44768	34240;22095	37033	37056	48239	48239					0.031373569376114574
QAAEHYKLQM	10	Unmodified	_QAAEHYKLQM_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.K1766Qfs*38|1|0.11|ENSG00000137497|chr11:72007356-72007357|-/G|frameshift_variant;nc|ENSG00000137497|Q14980-5|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	610.2908325195312	2	609.800423	1217.58629	2.4816	0.0015133	3.4733	0.002118	5.9549	0.0036313	609.8022658026051	98.732	0.98561	98.732	98.461	99.447	0					53	23	3	0	0	0	0.027028	1	10860	10860		18.262	3.3972	1	2154100			44769	4591	37034	37057	48240	48240					-0.01379730859753181
QAAEHYKLQM	10	Unmodified	_QAAEHYKLQM_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.K1766Qfs*38|1|0.11|ENSG00000137497|chr11:72007356-72007357|-/G|frameshift_variant;nc|ENSG00000137497|Q14980-5|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	609.800423	1217.58629	-1.3136	-0.00080103	5.8745	0.0035823	4.5609	0.0027812	609.8039633865869	99.906	0.89171	99.076	98.666	99.558	-0.83051	0.038373	0.0021544	NaN	18.262	32	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21928			44770	4591	37034	37057							-0.01379730859753181
QAAEHYKLQM	10	Unmodified	_QAAEHYKLQM_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.K1766Qfs*38|1|0.11|ENSG00000137497|chr11:72007356-72007357|-/G|frameshift_variant;nc|ENSG00000137497|Q14980-5|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	609.800423	1217.58629	0.71582	0.0004365	3.6226	0.0022091	4.3384	0.0026456	609.8025727132191	100.81	0.85361	99.204	98.802	99.656	-1.6053	0.16649	-0.000592	NaN	18.262	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30962			44771	4591	37034	37057							-0.01379730859753181
QAAEHYKLQM	10	Unmodified	_QAAEHYKLQM_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.K1766Qfs*38|1|0.11|ENSG00000137497|chr11:72007356-72007357|-/G|frameshift_variant;nc|ENSG00000137497|Q14980-5|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	609.800423	1217.58629	-0.10016	-6.108E-05	4.1689	0.0025422	4.0687	0.0024811	609.8028020084338	101.4	0.89566	99.138	98.974	99.87	-2.2665	0.10036	7.4171E-05	NaN	18.262	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21649			44772	4591	37034	37057							-0.01379730859753181
QAAEWKLQA	9	Unmodified	_QAAEWKLQA_					0	0	0		ENSG00000164440|ENST00000358430|TXLNB	ENSG00000164440|ENST00000358430|TXLNB	ENSG00000164440|ENST00000358430|TXLNB	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.3386840820312	2	522.777274	1043.53999	-1.1635	-0.00060826	-1.7393	-0.00090927	-2.9028	-0.0015175	522.776103637139	35.028	0.51986	35.028	34.864	35.384	0					16	10	3	0	0	0	0.027462	1	1766	1766		18.262	1.7889	1	93104			44773	6457	37035	37058	48241	48241					0.019965723004588654
QAAFQDSYRNL	11	Unmodified	_QAAFQDSYRNL_					0	0	0		ENSG00000235863|ENST00000451237|B3GALT4	ENSG00000235863|ENST00000451237|B3GALT4	ENSG00000235863|ENST00000451237|B3GALT4	MULTI-SECPEP	OvCa99_classI_Rep5	1	437.7527770996094	3	438.214198	1311.62076	1.4833	0.00065002	-1.0125	-0.00044371	0.47079	0.00020631	438.2132551288617	45.731	0.13049	45.731	45.624	45.754	0					4	2	2	0	0	0	0.025995	1	3178	3178		12.957	0	1	29207			44774	9309	37036	37059	48242	48242					-0.022581914472766584
QAAKVTSQL	9	Unmodified	_QAAKVTSQL_					0	0	0		nc|ENSG00000124615|Q9NZB8-7|MOCS1;nc|ENSG00000124615|Q9NZB8-2|MOCS1;nc|ENSG00000124615|Q9NZB8-8|MOCS1;ENSG00000124615|ENST00000340692|MOCS1	nc|ENSG00000124615|Q9NZB8-7|MOCS1	nc|ENSG00000124615|Q9NZB8-7|MOCS1	MULTI-MSMS	OvCa99_classI_Rep5	1	473.270263671875	2	473.271824	944.529095	0.32112	0.00015197	-0.078327	-3.707E-05	0.24279	0.0001149	473.2716408494673	45.227	0.56417	45.227	44.932	45.496	0					29	12	4	0	0	0	0.2422	1	3116	3116		69.628	2.134	1	551330			44775	3665	37037	37060	48243	48243					0.05461169926195453
QAANKFSH	8	Unmodified	_QAANKFSH_					0	0	0		tr|A0A553SKH8|A0A553SKH8_NIACIM3familyoligoendopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_18815PE=3SV=1	tr|A0A553SKH8|A0A553SKH8_NIACIM3familyoligoendopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_18815PE=3SV=1	tr|A0A553SKH8|A0A553SKH8_NIACIM3familyoligoendopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_18815PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	451.7262878417969	2	451.727584	901.440614	-0.31772	-0.00014352	-3.1347	-0.001416	-3.4524	-0.0015595	451.72605830362204	43.414	0.98174	43.414	43.014	43.995	0					41	22	3	0	0	0	0.73938	1	2876	2876		31.955	1.4512	1	940820			44776	33616	37038	37061	48244	48244					-0.014048255936245369
QAARQAVKK	9	Unmodified	_QAARQAVKK_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-MSMS	OvCa9_classI_Rep2	2	500.30596923828125	2	500.306532	998.598512	1.8295	0.00091529	-2.0216	-0.0010114	-0.1921	-9.611E-05	500.3053685545666	27.721	1.1711	25.012	24.828	25.999	-2.7097					57	25	3	0	0	0	0.61208	1	537	537		30.504	4.9296	1	318060	+		44777	20262	37039	37062	48245	48245					0.09915673665602753
QAASKTHGLL	10	Unmodified	_QAASKTHGLL_					0	0	0		nc|ENSG00000205879|Q658T7-2|FAM90A2P;nc|ENSG00000205879|Q658T7|FAM90A2P;nc|ENSG00000285950|A6NDY2|FAM90A10;nc|ENSG00000285937|A6NJQ4|FAM90A8;nc|ENSG00000285814|P0C7W9|FAM90A14;nc|ENSG00000285765|A8MXZ1|FAM90A23;nc|ENSG00000285720|P0DV74|FAM90A17;nc|ENSG00000285687|A8MWA6|FAM90A22;nc|ENSG00000285657|P0DV76|FAM90A19;nc|ENSG00000233295|A6NIJ5|FAM90A20;nc|ENSG00000233132|A0A8V8TPE2|FAM90A3;nc|ENSG00000233115|A0A8V8TNH8|FAM90A11;nc|ENSG00000230045|P0C7V4|FAM90A15;nc|ENSG00000223885|P0C7W8|FAM90A13;nc|ENSG00000215373|A8MXJ8|FAM90A5;nc|ENSG00000215354|P0C7X0|FAM90A24;ENSG00000229924|ENST00000512047|FAM90A26;nc|ENSG00000285975|A6NKC0|FAM90A7;nc|ENSG00000285975|A6NNJ1|FAM90A9;ENSG00000171847|ENST00000538603|FAM90A1	nc|ENSG00000205879|Q658T7-2|FAM90A2P	nc|ENSG00000205879|Q658T7-2|FAM90A2P	MSMS	OvCa99_classI_Rep5	1	513.291015625	2	513.290548	1024.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.123	1	40.123	39.623	40.623	0								0	0	0	0.11243	1	2414	2414		64.207	5.4253	1				44778	7239	37040	37063	48246	48246					0.055242611917947215
QAAVEPSL	8	Unmodified	_QAAVEPSL_					0	0	0			REV__tr|A0A553SIR0|A0A553SIR0_NIACISporegernimationproteinOS=NialliacirculansOX=1397GN=CEQ21_15340PE=3SV=1	REV__tr|A0A553SIR0|A0A553SIR0_NIACISporegernimationproteinOS=NialliacirculansOX=1397GN=CEQ21_15340PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.2238464355469	2	407.718893	813.423233	0.43425	0.00017705	-0.48555	-0.00019797	-0.051304	-2.0917E-05	407.71891455325283	41.877	0.5615	41.877	41.681	42.242	0					16	12	3	0	0	0	0.028476	1	2622	2622		16.473	0	1	158940	+		44779	29918	37041	37064	48247	48247					0.009058340807087006
QAAVPKQNT	9	Unmodified	_QAAVPKQNT_					0	0	0		JMJD1C|p.G987Efs*15|1|0.12|ENSG00000171988|chr10:63208709-63208709|C/-|frameshift_variant;ENSG00000171988|ENST00000399262|JMJD1C;nc|ENSG00000171988|Q15652-2|JMJD1C;nc|ENSG00000171988|Q15652-3|JMJD1C	JMJD1C|p.G987Efs*15|1|0.12|ENSG00000171988|chr10:63208709-63208709|C/-|frameshift_variant	JMJD1C|p.G987Efs*15|1|0.12|ENSG00000171988|chr10:63208709-63208709|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.2430725097656	2	478.761623	955.508694	-0.25888	-0.00012394	-3.012	-0.001442	-3.2709	-0.001566	478.7610677100173	47.892	0.39172	47.892	47.681	48.073	0					11	8	2	0	0	0	0.027462	1	3502	3502		32.812	2.4947	1	103770			44780	7256	37042	37065	48248	48248					0.029159992663721823
QAAVPLRKK	9	Unmodified	_QAAVPLRKK_					0	0	0		tr|A0A553SFF0|A0A553SFF0_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08785PE=3SV=1	tr|A0A553SFF0|A0A553SFF0_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08785PE=3SV=1	tr|A0A553SFF0|A0A553SFF0_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08785PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.8270263671875	2	505.827101	1009.63965	0.56325	0.00028491	-0.65799	-0.00033283	-0.094744	-4.7924E-05	505.8266223982482	36.013	0.94845	33.164	32.889	33.838	-2.849					40	18	3	0	0	0	0.61208	1	1204	1204		30.504	6.3009	1	132040			44781	33031	37043	37066	48249	48249					0.13521434705080537
QAAVPLRKK	9	Unmodified	_QAAVPLRKK_					0	0	0		tr|A0A553SFF0|A0A553SFF0_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08785PE=3SV=1	tr|A0A553SFF0|A0A553SFF0_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08785PE=3SV=1	tr|A0A553SFF0|A0A553SFF0_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_08785PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	505.827101	1009.63965	-2.8523	-0.0014428	2.6588	0.0013449	-0.19358	-9.792E-05	505.82829425797877	36.039	0.74205	33.33	33.102	33.844	-2.7097	0.082928	0.0027518	NaN	30.504	25	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37371			44782	33031	37043	37066							0.13521434705080537
QACVPDAH	8	Unmodified	_QACVPDAH_					0	0	0			REV__ENST00000532940.5_1_8:144921262-144922356:-|nuORF	REV__ENST00000532940.5_1_8:144921262-144922356:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	420.6859436035156	2	420.68707	839.359587	0.45136	0.00018988	-3.8298	-0.0016111	-3.3784	-0.0014213	420.6858936134745	101.61	0.8053	101.61	101.27	102.08	0					39	18	4	0	0	0	0.73626	1	11321	11321		33.516	3.674	1	1171200	+		44783	27249	37044	37067	48250	48250					-0.06651849628042328
QADKVRKQ	8	Unmodified	_QADKVRKQ_					0	0	0			REV__ENST00000491632.5_1_1:235341091-235490234:-|nuORF	REV__ENST00000491632.5_1_1:235341091-235490234:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	486.78363037109375	2	486.78289	971.551228	0.43908	0.00021374	-0.52243	-0.00025431	-0.083348	-4.0573E-05	486.7825302648535	31.131	0.98493	28.421	28.248	29.233	-2.7097					37	19	4	0	0	0	0.75723	1	937	937		23.042	0	1	171450	+		44784	15658	37045	37068	48251	48251					0.06431394394610379
QADLFKLR	8	Unmodified	_QADLFKLR_					0	0	0		tr|A0A7D7AG50|A0A7D7AG50_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07735PE=4SV=1	tr|A0A7D7AG50|A0A7D7AG50_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07735PE=4SV=1	tr|A0A7D7AG50|A0A7D7AG50_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07735PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	495.78985595703125	2	495.790184	989.565815	-0.39421	-0.00019544	-0.14867	-7.3711E-05	-0.54288	-0.00026916	495.7900541387645	75.089	1.6578	73.118	72.796	74.454	-1.9711					83	31	5	0	0	0	0.37357	1	6173	6173		93.195	5.4412	1	532910			44785	36260	37046	37069	48252	48252					0.07061466542756989
QADPTGRLLDA	11	Unmodified	_QADPTGRLLDA_					0	0	0		nc|ENSG00000172936|Q99836-4|MYD88;ENST00000460295.1_1_3:38180152-38181542:+|nuORF;nc|ENSG00000172936|Q99836-3|MYD88;ENST00000416282.2_1_3:38180152-38182096:+|nuORF;nc|ENSG00000172936|Q99836-2|MYD88;nc|ENSG00000172936|Q99836-5|MYD88;ENSG00000172936|ENST00000650905|MYD88;nc|ENSG00000172936|Q99836-6|MYD88	nc|ENSG00000172936|Q99836-4|MYD88	nc|ENSG00000172936|Q99836-4|MYD88	MULTI-MSMS	OvCa99_classI_Rep5	1	578.800537109375	2	578.801477	1155.5884	0.89312	0.00051694	-0.6968	-0.00040331	0.19632	0.00011363	578.800967232817	144.95	0.71309	144.95	144.64	145.36	0					28	14	3	0	0	0	0.56391	1	16947	16947		47.96	7.1814	1	161520			44786	7332	37047	37070	48253	48253					0.016830211497108394
QADVHQFL	8	Unmodified	_QADVHQFL_					0	0	0		PLCE1|p.M1919Hfs*27|1|0.04|ENSG00000138193|chr10:94306554-94306555|-/T|frameshift_variant;ENSG00000138193|ENST00000371380|PLCE1;nc|ENSG00000138193|Q9P212-2|PLCE1	PLCE1|p.M1919Hfs*27|1|0.04|ENSG00000138193|chr10:94306554-94306555|-/T|frameshift_variant;nc|ENSG00000138193|Q9P212-2|PLCE1	PLCE1|p.M1919Hfs*27|1|0.04|ENSG00000138193|chr10:94306554-94306555|-/T|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	479.2436828613281	2	479.243067	956.47158	-0.28231	-0.0001353	-0.024108	-1.1554E-05	-0.30642	-0.00014685	479.2429250313734	47.964	0.77449	47.964	47.681	48.455	0					44	17	4	0	0	0	0.60331	1	3479	3479		63.306	0	1	4004000			44787	4669;15043	37048	37071	48254	48254					-0.008396722793804656
QAEGKRRELL	10	Unmodified	_QAEGKRRELL_					0	0	0			REV__CGN|p.A1165Vfs*12|1|0.11|ENSG00000143375|chr1:151537227-151537228|-/TTAGA|frameshift_variant	REV__CGN|p.A1165Vfs*12|1|0.11|ENSG00000143375|chr1:151537227-151537228|-/TTAGA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	400.2476501464844	3	400.566683	1198.67822	0.90937	0.00036426	3.2088	0.0012853	4.1181	0.0016496	400.5677555330743	56.693	0.79338	53.889	53.572	54.366	-2.804					20	15	2	0	0	0	0.026819	1	3972	3972		50.034	28.253	1	13703	+		44788	15785	37049	37072	48255	48255					0.0868269554894141
QAELEWQAE	9	Unmodified	_QAELEWQAE_					0	0	0			REV__ENSG00000244242|ENST00000340134|IFITM10	REV__ENSG00000244242|ENST00000340134|IFITM10	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.2559814453125	2	552.253828	1102.4931	-0.7949	-0.00043899	0.050259	2.7755E-05	-0.74464	-0.00041123	552.2538484829438	73.624	1.5824	70.228	69.93	71.512	-3.3961					91	32	5	0	0	0	0.16562	1	5719	5719		82.241	4.9229	1	1557500	+		44789	23475	37050	37073	48256	48256					-0.05404332041325688
QAELQAINQ	9	Unmodified	_QAELQAINQ_					0	0	0			REV__nc|ENSG00000054282|Q86SQ7-3|SDCCAG8	REV__nc|ENSG00000054282|Q86SQ7-3|SDCCAG8	MULTI-MSMS	OvCa9_classI_Rep2	2	507.76361083984375	2	507.764363	1013.51417	-2.8803	-0.0014625	2.383	0.00121	-0.4973	-0.00025251	507.76550943835366	36.279	0.83902	33.569	33.35	34.189	-2.7097					40	16	4	0	0	0	0.55588	1	1559	1559		37.159	1.9584	1	316260	+		44790	16700	37051	37074	48257	48257					0.00795678058170779
QAEPTVRKH	9	Unmodified	_QAEPTVRKH_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.2510375976562	2	533.293622	1064.57269	-1.2265	-0.00065409	1.7594	0.00093826	0.53286	0.00028417	533.2944320781196	128.08	1.5282	126.65	125.94	127.47	-1.4357					49	29	2	0	0	0	0.027426	1	12301	12301		56.721	25.191	1	77001			44791	7656	37052	37075	48258	48258					0.04298779423334054
QAEPTVRKH	9	Unmodified	_QAEPTVRKH_					0	0	0		ENSG00000177084|ENST00000320574|POLE;ENST00000537064.5_1_12:133201285-133234573:-|nuORF	ENSG00000177084|ENST00000320574|POLE	ENSG00000177084|ENST00000320574|POLE	MULTI-MATCH	OvCa9_classI_Rep3	3		2	533.293622	1064.57269	1.5292	0.0008155	-0.94936	-0.00050628	0.57982	0.00030921	533.2931186625448	127.79	1.6255	126.7	125.89	127.52	-1.0933	-0.047182	-0.0016694	NaN	56.721	37	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55972			44792	7656	37052	37075							0.04298779423334054
QAFGGLTRAL	10	Unmodified	_QAFGGLTRAL_					0	0	0		ENSG00000148300|ENST00000371942|REXO4	ENSG00000148300|ENST00000371942|REXO4	ENSG00000148300|ENST00000371942|REXO4	MULTI-MSMS	OvCa9_classI_Rep2	2	517.2932739257812	2	517.293091	1032.57163	-0.99481	-0.00051461	0.45853	0.00023719	-0.53628	-0.00027741	517.2930565214009	52.492	2.0297	49.679	49.146	51.176	-2.8129					90	40	5	0	0	0	0.49558	1	3517	3517		54.776	7.119	1	322850			44793	5397	37053	37076	48259	48259					0.05664565054416926
QAFICAFFGA	10	Unmodified	_QAFICAFFGA_					0	0	0		tr|A0A553SSA0|A0A553SSA0_NIACIDUF2798domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02700PE=4SV=1	tr|A0A553SSA0|A0A553SSA0_NIACIDUF2798domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02700PE=4SV=1	tr|A0A553SSA0|A0A553SSA0_NIACIDUF2798domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02700PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.736083984375	2	537.757495	1073.50044	-0.89803	-0.00048292	-1.6487	-0.0008866	-2.5467	-0.0013695	537.7567433722174	62.168	0.53836	58.71	58.523	59.061	-3.4577					26	10	3	0	0	0	0.026982	1	4328	4328		16.473	0	1	69043			44794	34349	37054	37077	48260	48260					-0.03337270974589046
QAFYSDPSVL	10	Unmodified	_QAFYSDPSVL_					0	0	0		nc|ENSG00000068024|P56524-2|HDAC4;nc|ENSG00000068024|P56524|HDAC4;ENSG00000068024|ENST00000543185|HDAC4;ENST00000487617.5_1_2:240002789-240024568:-|nuORF	nc|ENSG00000068024|P56524-2|HDAC4	nc|ENSG00000068024|P56524-2|HDAC4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.7939453125	2	563.774396	1125.53424	1.078	0.00060774	2.5848	0.0014572	3.6628	0.002065	563.7761577843132	89.175	0.88431	86.572	86.286	87.171	-2.6027					31	17	3	0	0	0	0.026462	1	7662	7662		76.774	12.567	1	54099			44795	1384	37055	37078	48261	48261					-0.02350571001852586
QAGAGSWLK	9	Unmodified	_QAGAGSWLK_					0	0	0		PRDM16|p.A258Lfs*86|1|0.38|ENSG00000142611|chr1:3402882-3402882|G/-|frameshift_variant;PRDM16|p.A913Sfs*70|1|0.09|ENSG00000142611|chr1:3417871-3417872|-/G|frameshift_variant;nc|ENSG00000142611|Q9HAZ2-2|PRDM16;nc|ENSG00000142611|Q9HAZ2-3|PRDM16;ENSG00000142611|ENST00000270722|PRDM16	PRDM16|p.A258Lfs*86|1|0.38|ENSG00000142611|chr1:3402882-3402882|G/-|frameshift_variant	PRDM16|p.A258Lfs*86|1|0.38|ENSG00000142611|chr1:3402882-3402882|G/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	459.24639892578125	2	459.245609	916.476666	-0.31673	-0.00014546	0.42764	0.00019639	0.1109	5.0932E-05	459.24564277984285	48.697	0.65916	48.697	48.372	49.031	0					31	14	3	0	0	0	0.083631	1	3588	3588		101.6	4.128	1	1321500			44796	4983	37056	37079	48262	48262					0.015086315832263608
QAGGIGLRRE	10	Unmodified	_QAGGIGLRRE_					0	0	0			REV__ENSG00000146112|ENST00000274853|PPP1R18	REV__ENSG00000146112|ENST00000274853|PPP1R18	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.321533203125	2	528.799072	1055.58359	-2.5805	-0.0013646	2.5517	0.0013493	-0.028788	-1.5223E-05	528.8002299150345	37.515	0.78673	34.805	34.633	35.419	-2.7097					28	15	2	0	0	0	0.026624	1	1757	1757		54.722	31.68	1	72656	+		44797	19995	37057	37080	48263	48263					0.05802181797616868
QAGKDLRLV	9	Unmodified	_QAGKDLRLV_					0	0	0		ENSG00000196208|ENST00000381486|GREB1;GREB1|p.A269Vfs*27|1|0.27|ENSG00000196208|chr2:11580737-11580752|CAATGGGTCCGGCTGT/-|frameshift_variant;nc|ENSG00000196208|Q4ZG55-3|GREB1;nc|ENSG00000196208|Q4ZG55-2|GREB1;nc|ENSG00000141449|Q9C091-3|GREB1L;ENSG00000141449|ENST00000424526|GREB1L;nc|ENSG00000141449|Q9C091-4|GREB1L;ENST00000578368.5_1_18:18963479-19048745:+|nuORF;ENST00000584446.5_1_18:18963479-19034595:+|nuORF	ENSG00000196208|ENST00000381486|GREB1;nc|ENSG00000141449|Q9C091-3|GREB1L	ENSG00000196208|ENST00000381486|GREB1	MULTI-MSMS	OvCa9_classI_Rep2	2	500.30078125	2	500.300916	998.587279	0.39193	0.00019608	2.9644	0.0014831	3.3563	0.0016792	500.3004866188761	30.187	0.78995	27.477	27.261	28.051	-2.7097					46	15	5	0	0	0	0.63422	1	805	805		27.882	0	1	66893			44798	8577;4915	37058	37081	48264	48264					0.08792851571467963
QAGKLLPL	8	Unmodified	_QAGKLLPL_					0	0	0		ENST00000528047.5_1_8:145734706-145736158:+|nuORF	ENST00000528047.5_1_8:145734706-145736158:+|nuORF	ENST00000528047.5_1_8:145734706-145736158:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	420.2705383300781	2	420.271096	838.527639	-1.0256	-0.00043103	1.3954	0.00058645	0.36979	0.00015541	420.2715248845695	120.07	1.0858	119.9	119.59	120.68	-0.17138					43	21	3	0	0	0	0.73288	1	11569	11569		35.201	0	1	82171			44799	13248	37059	37082	48265	48265					0.10191580628099928
QAGSGIPKLNQ	11	Unmodified	_QAGSGIPKLNQ_					0	0	0			REV__nc|ENSG00000109339|P53779-2|MAPK10	REV__nc|ENSG00000109339|P53779-2|MAPK10	MULTI-MSMS	OvCa99_classI_Rep5	1	556.8073120117188	2	556.806562	1111.59857	-0.38712	-0.00021555	-0.26586	-0.00014803	-0.65298	-0.00036358	556.8067071115846	25.692	0.59974	25.692	25.442	26.042	0					38	11	4	0	0	0	0.50928	1	588	588		52.937	0	1	190900	+		44800	17927	37060	37083	48266	48266					0.04723628874944552
QAGVLGKPKK	10	Unmodified	_QAGVLGKPKK_					0	0	0			REV__nc|ENSG00000166435|Q6P2D8-2|XRRA1	REV__nc|ENSG00000166435|Q6P2D8-2|XRRA1	MULTI-MSMS	OvCa9_classI_Rep2	2	513.3265991210938	2	513.326934	1024.63931	0.26441	0.00013573	-0.33992	-0.00017449	-0.075507	-3.876E-05	513.3265060249057	31.277	0.7384	28.567	28.396	29.134	-2.7097					27	14	3	0	0	0	0.31157	1	936	936		79.451	13.022	1	56610	+		44801	21192	37061	37084	48267	48267					0.12798014985219197
QAHGPRLEEV	10	Unmodified	_QAHGPRLEEV_					0	0	0		ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-3|SPTBN4;nc|ENSG00000160460|Q9H254-4|SPTBN4;nc|ENSG00000160460|Q9H254-5|SPTBN4;ENST00000596900.5_1_19:41036434-41060733:+|nuORF	ENSG00000160460|ENST00000598249|SPTBN4	ENSG00000160460|ENST00000598249|SPTBN4	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.7644653320312	2	568.296362	1134.57817	1.5144	0.00086061	1.309	0.00074388	2.8233	0.0016045	568.2964916735351	149.33	0.53703	149.33	149.16	149.7	0					24	10	3	0	0	0	0.026646	1	17475	17475		61.691	6.1871	1	108910			44802	6068	37062	37085	48268	48268					0.01626458215105231
QAHPQRVIT	9	Unmodified	_QAHPQRVIT_					0	0	0		Tigger4_dup106|chr1:206074674-206075604:+|2.263376500711114|0.099917421413694|4.5|421.0|3|1|sense	Tigger4_dup106|chr1:206074674-206075604:+|2.263376500711114|0.099917421413694|4.5|421.0|3|1|sense	Tigger4_dup106|chr1:206074674-206075604:+|2.263376500711114|0.099917421413694|4.5|421.0|3|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.314697265625	2	525.296165	1048.57778	1.4799	0.00077739	1.2206	0.00064119	2.7005	0.0014186	525.2965192397428	120.08	0.30602	120.08	119.83	120.14	0					8	6	2	0	0	0	0.027462	1	13793	13793		14.865	0.72775	1	63933			44803	32958	37063	37086	48269	48269					0.05543083285942885
QAIHNYLL	8	Unmodified	_QAIHNYLL_					0	0	0		VPS18|p.F792Cfs*167|1|0.15|ENSG00000104142|chr15:40902793-40902794|-/GTGGCAGCGGCAGGCCCCCTTGC|frameshift_variant;ENSG00000104142|ENST00000220509|VPS18	VPS18|p.F792Cfs*167|1|0.15|ENSG00000104142|chr15:40902793-40902794|-/GTGGCAGCGGCAGGCCCCCTTGC|frameshift_variant	VPS18|p.F792Cfs*167|1|0.15|ENSG00000104142|chr15:40902793-40902794|-/GTGGCAGCGGCAGGCCCCCTTGC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	486.2719421386719	2	486.269084	970.523616	0.13154	6.3963E-05	3.1349	0.0015244	3.2664	0.0015884	486.2705294453316	71.824	0.94339	71.824	71.507	72.45	0					40	22	3	0	0	0	0.73288	1	6983	6983		35.201	0	1	3533300			44804	2355	37064	37087	48270	48270					0.0371749113437545
QAIHQLKV	8	Unmodified	_QAIHQLKV_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;ENST00000565738.1_1_16:75674022-75675473:-|nuORF	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	468.76654052734375	2	468.784902	935.55525	-0.87886	-0.000412	0.7434	0.00034849	-0.13547	-6.3504E-05	468.78507202551447	34.292	0.37827	34.292	34.113	34.491	0					16	7	3	0	0	0	0.028476	1	1622	1622		47.916	5.4411	1	61516			44805	1326	37065	37088	48271	48271					0.08489483888331506
QAIKGAHLTI	10	Unmodified	_QAIKGAHLTI_					0	0	0			REV__tr|A0A553SNP9|A0A553SNP9_NIACIDUF2292domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24820PE=4SV=1	REV__tr|A0A553SNP9|A0A553SNP9_NIACIDUF2292domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24820PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	526.3164672851562	2	526.316566	1050.61858	1.4872	0.00078273	-2.724	-0.0014337	-1.2369	-0.00065098	526.3150539679418	125.72	2.3814	125.72	125.11	127.49	0					116	54	3	0	0	0	0.35465	1	14566	14566		74.255	2.9593	1	273860	+		44806	30438	37066	37089	48272	48272					0.09529424605557324
QAIKISSVVT	10	Unmodified	_QAIKISSVVT_					0	0	0			REV__nc|ENSG00000172403|Q9UMS6-4|SYNPO2	REV__nc|ENSG00000172403|Q9UMS6-4|SYNPO2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.2692260742188	2	523.316232	1044.61791	-1.188	-0.00062172	2.7916	0.0014609	1.6036	0.00083919	523.3175525824194	69.659	1.0248	66.177	65.614	66.639	-3.4812					30	20	2	0	0	0	0.02663	1	5203	5203		51.193	24.5	1	90730	+		44807	21696	37067	37090	48273	48273					0.09738585165860059
QAIKISSVVT	10	Unmodified	_QAIKISSVVT_					0	0	0			REV__nc|ENSG00000172403|Q9UMS6-4|SYNPO2	REV__nc|ENSG00000172403|Q9UMS6-4|SYNPO2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	523.316232	1044.61791	-0.77462	-0.00040537	3.3187	0.0017367	2.5441	0.0013314	523.3176701915178	68.658	0.74341	66.038	65.573	66.316	-2.6203	-0.069692	0.00036262	NaN	51.193	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40815	+		44808	21696	37067	37090							0.09738585165860059
QAIKNGQAL	9	Unmodified	_QAIKNGQAL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OvCa99_classI_Rep5	1	471.77154541015625	2	471.771991	941.529429	-0.32974	-0.00015556	-0.31299	-0.00014766	-0.64273	-0.00030322	471.77194916677064	42.589	0.72788	42.589	42.286	43.014	0					38	16	4	0	0	0	0.12365	1	2748	2748		90.777	11.326	1	1135500			44809	15005	37068	37091	48274	48274					0.05632589646052111
QAILDKIN	8	Unmodified	_QAILDKIN_					0	0	0		tr|A0A7D6VXK7|A0A7D6VXK7_9CLOTDNArepairATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11665PE=4SV=1	tr|A0A7D6VXK7|A0A7D6VXK7_9CLOTDNArepairATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11665PE=4SV=1	tr|A0A7D6VXK7|A0A7D6VXK7_9CLOTDNArepairATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11665PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.2405700683594	2	457.768917	913.523281	-0.60696	-0.00027785	0.67935	0.00031099	0.072393	3.3139E-05	457.76921812071436	52.878	0.69693	49.67	49.4	50.097	-3.208					23	13	2	0	0	0	0.028476	1	3212	3212		35.618	0	1	75689			44810	35288	37069	37092	48275	48275					0.06306071414519465
QAIRIIQERN	10	Unmodified	_QAIRIIQERN_					0	0	0		nc|ENSG00000163001|Q96G28-2|CFAP36;ENSG00000163001|ENST00000349456|CFAP36;CFAP36|p.S238Pfs*7|1|0.24|ENSG00000163001|chr2:55544007-55544007|C/-|frameshift_variant;CFAP36|p.K165Rfs*4|1|0.27|ENSG00000163001|chr2:55535718-55535719|AA/-|frameshift_variant	nc|ENSG00000163001|Q96G28-2|CFAP36	nc|ENSG00000163001|Q96G28-2|CFAP36	MULTI-SECPEP	OvCa99_classI_Rep5	1	620.3388671875	2	620.85966	1239.70477	-1.075	-0.00066742	4.066	0.0025244	2.991	0.001857	620.8620298691751	36.374	0.49608	36.374	36.211	36.707	0					22	10	3	0	0	0	0.027062	1	1933	1933		32.751	2.2469	1	265590			44811	15136	37070	37093	48276	48276					0.09450384440287962
QAIRRLGR	8	Unmodified	_QAIRRLGR_					0	0	0		ENST00000462785.1_1_2:112526870-112536431:-|nuORF;ENST00000454465.1_1_2:87398353-87423749:+|nuORF;ENSG00000153107|ENST00000341068|ANAPC1	ENST00000462785.1_1_2:112526870-112536431:-|nuORF;ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.25518798828125	2	485.306867	968.599181	-0.41444	-0.00020113	2.9767	0.0014446	2.5623	0.0012435	485.3081394076769	108.54	3.2102	107.34	106.8	110.01	-1.1978					120	61	3	0	0	0	0.028476	1	7986	7986		18.324	0	1	238470			44812	12211;5660	37071	37094	48277	48277					0.11362513105336802
QAISHFQT	8	Unmodified	_QAISHFQT_					0	0	0			REV__chr19:50999579-51001098|233|25.2|0.04|9.32|-|1|None,KLK8|1	REV__chr19:50999579-51001098|233|25.2|0.04|9.32|-|1|None,KLK8|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.7861022949219	2	466.235242	930.45593	-0.13634	-6.3566E-05	0.75356	0.00035133	0.61722	0.00028777	466.23550502195116	73.056	0.40221	73.056	72.915	73.317	0					14	9	2	0	0	0	0.028476	1	7138	7138		7.1934	0	1	509210	+		44813	15621	37072	37095	48278	48278					-0.012079587964194616
QAKIWTIVN	9	Unmodified	_QAKIWTIVN_					0	0	0			REV__tr|A0A553SFQ7|A0A553SFQ7_NIACIDJ-1/PfpIfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09325PE=4SV=1	REV__tr|A0A553SFQ7|A0A553SFQ7_NIACIDJ-1/PfpIfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09325PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	535.8217163085938	2	536.811116	1071.60768	-1.3386	-0.00071857	-0.8615	-0.00046246	-2.2001	-0.001181	536.8098924815827	58.045	1.2508	55.253	54.823	56.074	-2.792					36	24	2	0	0	0	0.027418	1	4151	4151		68.787	19.345	1	64728	+		44814	29608	37073	37096	48279	48279					0.07474022231258459
QAKIWTIVN	9	Unmodified	_QAKIWTIVN_					0	0	0			REV__tr|A0A553SFQ7|A0A553SFQ7_NIACIDJ-1/PfpIfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09325PE=4SV=1	REV__tr|A0A553SFQ7|A0A553SFQ7_NIACIDJ-1/PfpIfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09325PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.822265625	2	536.811116	1071.60768	-0.98457	-0.00052853	-0.44512	-0.00023895	-1.4297	-0.00076747	536.8096854043658	58.714	1.6376	55.322	55.002	56.639	-3.392					63	31	4	0	0	0	0.027418	1	3865	3865		58.782	12.81	1	161170	+		44815	29608	37073	37096	48280	48280					0.07474022231258459
QAKKCEVMKN	10	Carbamidomethyl (C),Oxidation (M)	_QAKKC(Carbamidomethyl (C))EVM(Oxidation (M))KN_	QAKKC(1)EVMKN	QAKKCEVM(1)KN	QAKKC(59)EVMKN	QAKKCEVM(59)KN	0	1	1			REV__nc|ENSG00000153944|Q96DH6-3|MSI2	REV__nc|ENSG00000153944|Q96DH6-3|MSI2	MULTI-MSMS	OvCa9_classI_Rep4_	4	626.311279296875	2	626.31284	1250.61113	-0.42242	-0.00026456	-2.2405	-0.0014033	-2.6629	-0.0016678	626.3113957014747	51.472	1.6644	48.298	47.821	49.486	-3.1734					99	32	5	0	0	0	0.46756	1	3004	3004		58.782	18.004	1	1010000	+		44816	19257	37074	37097	48281	48281	212	441			-0.00415419048658805
QAKLELRV	8	Unmodified	_QAKLELRV_					0	0	0		ENSG00000151466|ENST00000281142|SCLT1;ENST00000502495.1_1_4:129873642-129918394:-|nuORF	ENSG00000151466|ENST00000281142|SCLT1	ENSG00000151466|ENST00000281142|SCLT1	MULTI-MSMS	OvCa99_classI_Rep5	1	478.79833984375	2	478.798009	955.581465	0.0053992	2.5851E-06	-0.24909	-0.00011926	-0.24369	-0.00011668	478.79775575018215	60.579	0.97981	60.579	60.352	61.332	0					53	22	4	0	0	0	0.61841	1	5317	5317		60.118	1.8883	1	5789700			44817	5555	37075	37098	48282	48282					0.10189753059808027
QAKLSERRRK	10	Unmodified	_QAKLSERRRK_					0	0	0		ENSG00000090889|ENST00000374403|KIF4A;KIF4A|p.C1088Lfs*26|1|0.31|ENSG00000090889|chrX:70417891-70417892|-/C|frameshift_variant;nc|ENSG00000090889|O95239-2|KIF4A	ENSG00000090889|ENST00000374403|KIF4A;nc|ENSG00000090889|O95239-2|KIF4A	ENSG00000090889|ENST00000374403|KIF4A	MULTI-MSMS	OvCa9_classI_Rep4_	4	424.59429931640625	3	424.593343	1270.7582	-0.16438	-6.9795E-05	1.5418	0.00065466	1.3775	0.00058486	424.5943837137139	20.283	1.1246	18.944	18.689	19.813	-1.3386					52	23	3	0	0	0	0.76328	1	41	41		23.378	1.6922	1	92833			44818	1850;14917	37076	37099	48283	48283					0.13365181942776871
QAKPQHFQ	8	Unmodified	_QAKPQHFQ_					0	0	0		SALL1|p.I1085Tfs*17|1|0.14|ENSG00000103449|chr16:51138968-51138969|-/G|frameshift_variant;ENSG00000103449|ENST00000251020|SALL1;ENST00000562674.1_1_16:51177212-51185152:-|nuORF	SALL1|p.I1085Tfs*17|1|0.14|ENSG00000103449|chr16:51138968-51138969|-/G|frameshift_variant	SALL1|p.I1085Tfs*17|1|0.14|ENSG00000103449|chr16:51138968-51138969|-/G|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	492.25799560546875	2	492.256508	982.498464	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.49	1	29.49	28.99	29.99	0								0	0	0	0.30129	1	1056	1056		31.955	6.5047	1				44819	2317	37077	37100	48284	48284					0.00651436331804689
QAKRGRIQR	9	Unmodified	_QAKRGRIQR_					0	0	0		ENST00000290552.7_1_16:55358403-55358643:+|nuORF	ENST00000290552.7_1_16:55358403-55358643:+|nuORF	ENST00000290552.7_1_16:55358403-55358643:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.283447265625	2	556.841605	1111.66866	-0.27374	-0.00015243	0.88135	0.00049077	0.60761	0.00033834	556.8424064816767	69.631	0.28071	69.631	69.475	69.756	0					10	6	2	0	0	0	0.027462	1	6652	6652		37.159	7.3176	1	131630			44820	10089	37078	37101	48285	48285					0.11728972054083897
QAKRRRRELRR	11	Unmodified	_QAKRRRRELRR_					0	0	0			REV__nc|ENSG00000196557|O95180-2|CACNA1H	REV__nc|ENSG00000196557|O95180-2|CACNA1H	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.29437255859375	3	508.985457	1523.93454	0.1336	6.8E-05	2.807	0.0014287	2.9406	0.0014967	508.98681089286794	38.315	1.1894	35.389	35.106	36.296	-2.9264					57	23	4	0	0	0	0.026383	1	1492	1492		2.8518	0	1	100560	+		44821	29078	37079	37102	48286	48286					0.19353235896574006
QAKSILHGLL	10	Unmodified	_QAKSILHGLL_					0	0	0			REV__nc|ENSG00000053747|Q16787-3|LAMA3	REV__nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3314819335938	2	540.332216	1078.64988	-0.54331	-0.00029357	0.17727	9.5786E-05	-0.36604	-0.00019778	540.332194443295	110.01	0.79148	109.83	109.51	110.3	-0.17236					41	15	4	0	0	0	0.6104	1	10345	10345		40.778	0.20554	1	218440	+		44822	16695	37080	37103	48287	48287					0.11369997639667417
QALFPACVLKN	11	Unmodified	_QALFPACVLKN_					0	0	0		ENSG00000079785|ENST00000233084|DDX1;nc|ENSG00000079785|Q92499-3|DDX1;nc|ENSG00000079785|Q92499-2|DDX1	ENSG00000079785|ENST00000233084|DDX1	ENSG00000079785|ENST00000233084|DDX1	MULTI-SECPEP	OvCa99_classI_Rep5	1	601.9741821289062	2	602.331359	1202.64816	1.0386	0.00062557	2.0753	0.00125	3.1139	0.0018756	602.3321326622932	152.79	0.92709	152.79	152.52	153.45	0					40	21	3	0	0	0	0.02538	1	17965	17965		17.468	0	1	48091			44823	1620	37081	37104	48288	48288					0.05494620559397845
QALGLHLCA	9	Unmodified	_QALGLHLCA_					0	0	0		ENST00000216181.9_1_22:36677793-36678213:-|nuORF	ENST00000216181.9_1_22:36677793-36678213:-|nuORF	ENST00000216181.9_1_22:36677793-36678213:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.2373962402344	2	463.249837	924.485122	-0.48927	-0.00022666	4.4173	0.0020463	3.928	0.0018197	463.2520229779762	38.23	0.23355	38.23	38.114	38.348	0					7	4	2	0	0	0	0.027462	1	2165	2165		33.516	6.4683	1	21922			44824	9666	37082	37105	48289	48289					0.019858622282072247
QALHLVFA	8	Unmodified	_QALHLVFA_					0	0	0			REV__ENSG00000213927|ENST00000259631|CCL27	REV__ENSG00000213927|ENST00000259631|CCL27	MULTI-MSMS	OvCa9_classI_Rep2	2	449.7643127441406	2	449.760895	897.507237	5.9884	0.0026934	2.0789	0.00093502	8.0674	0.0036284	449.7616579337906	25.669	0.8354	22.96	22.778	23.613	-2.7097					39	19	3	0	0	0	0.75724	1	292	292		23.037	1.3344	1	137640	+		44825	23276	37083	37106	48290	48290					0.054384099682806664
QALLLPDAPLV	11	Unmodified	_QALLLPDAPLV_					0	0	0		ENSG00000167378|ENST00000422989|IRGQ	ENSG00000167378|ENST00000422989|IRGQ	ENSG00000167378|ENST00000422989|IRGQ	MULTI-MSMS	OvCa9_classI_Rep3	3	575.3450927734375	2	575.347532	1148.68051	-6.2917	-0.0036199	2.5771	0.0014827	-3.7146	-0.0021372	575.3489585356984	154.97	1.0558	153.9	153.56	154.61	-1.073					68	25	4	0	0	0	0.71498	1	13373	13373		24.519	0.31644	1	137860			44826	6785	37084	37107	48291	48291					0.1121173123403878
QALPRKAI	8	Unmodified	_QALPRKAI_					0	0	0		nc|ENSG00000288649|Q5JWF8|ACTL10	nc|ENSG00000288649|Q5JWF8|ACTL10	nc|ENSG00000288649|Q5JWF8|ACTL10	MULTI-MSMS	OvCa9_classI_Rep2	2	448.7873229980469	2	448.787444	895.560336	2.025	0.00090881	-2.17	-0.00097386	-0.14494	-6.5048E-05	448.7863132726202	47.125	1.2876	44.415	44.043	45.331	-2.7097					65	25	4	0	0	0	0.73626	1	2857	2857		33.516	0	1	222200			44827	15386	37085	37108	48292	48292					0.10837787750938332
QALPWVRYI	9	Unmodified	_QALPWVRYI_					0	0	0		ENSG00000072958|ENST00000291439|AP1M1;nc|ENSG00000072958|Q9BXS5-2|AP1M1;ENST00000592703.1_1_19:16344886-16345243:+|nuORF;ENSG00000129354|ENST00000250244|AP1M2;nc|ENSG00000129354|Q9Y6Q5-2|AP1M2	ENSG00000072958|ENST00000291439|AP1M1	ENSG00000072958|ENST00000291439|AP1M1	MULTI-MSMS	OvCa99_classI_Rep5	1	573.3286743164062	2	573.326934	1144.63931	1.6337	0.00093662	0.84772	0.00048602	2.4814	0.0014226	573.3272675674331	126.1	0.92739	126.1	125.81	126.73	0					44	19	3	0	0	0	0.38529	1	14572	14572		53.351	2.1588	1	572110			44828	1484	37086	37109	48293	48293					0.07278014985240588
QALQLAGALD	10	Unmodified	_QALQLAGALD_					0	0	0		MAMDC2|p.E508Afs*19|1|0.62|ENSG00000165072|chr9:70170502-70170503|-/CTGGATATAGGGAGGTACAACCAAGTTTAGTCAA|frameshift_variant;ENSG00000165072|ENST00000377182|MAMDC2	MAMDC2|p.E508Afs*19|1|0.62|ENSG00000165072|chr9:70170502-70170503|-/CTGGATATAGGGAGGTACAACCAAGTTTAGTCAA|frameshift_variant	MAMDC2|p.E508Afs*19|1|0.62|ENSG00000165072|chr9:70170502-70170503|-/CTGGATATAGGGAGGTACAACCAAGTTTAGTCAA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	499.3053894042969	2	500.277106	998.53966	-0.27198	-0.00013607	-0.78674	-0.00039359	-1.0587	-0.00052966	500.2762231005776	109.64	0.44521	109.47	109.12	109.56	-0.17237					12	8	2	0	0	0	0.026802	1	10297	10297		19.997	9.1312	1	6734.7			44829	6515	37087	37110	48294	48294					0.04033152580609567
QALSLGGRAL	10	Unmodified	_QALSLGGRAL_					0	0	0			REV__ENST00000496266.1_1_2:69002184-69002349:+|nuORF	REV__ENST00000496266.1_1_2:69002184-69002349:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.2922058105469	2	493.293091	984.571629	0.8364	0.00041259	-1.5465	-0.00076286	-0.71006	-0.00035027	493.29220672489055	32.044	1.3124	29.349	28.84	30.153	-2.6954					72	40	2	0	0	0	0.84374	1	723	723		13.454	0.49486	1	42685	+		44830	26756	37088	37111	48295	48295					0.07872565054447023
QALTKQRLE	9	Unmodified	_QALTKQRLE_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6;ENST00000471232.5_1_2:32750532-32815924:+|nuORF	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.3384399414062	2	543.81693	1085.61931	2.0815	0.001132	-1.0001	-0.00054386	1.0814	0.0005881	543.8176556826168	77.27	0.62716	77.27	77.002	77.629	0					31	14	3	0	0	0	0.027462	1	7806	7806		26.693	6.6961	1	239250			44831	3125	37089	37112	48296	48296					0.07992219254606425
QAMPGWPSMV	10	Unmodified	_QAMPGWPSMV_					0	0	0		ENST00000358994.8_1_9:131909974-131910454:+|nuORF	ENST00000358994.8_1_9:131909974-131910454:+|nuORF	ENST00000358994.8_1_9:131909974-131910454:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.255126953125	2	552.254262	1102.49397	-0.7949	-0.00043899	-0.73597	-0.00040644	-1.5309	-0.00084543	552.2538484829438	73.624	1.5824	70.228	69.93	71.512	-3.3961					91	32	5	0	0	0	0.48198	1	5735	5735		56.721	8.7615	1	1557500			44832	10747	37090	37113	48297	48297					-0.05317532197614128
QANTIFHLF	9	Unmodified	_QANTIFHLF_					0	0	0		ENSG00000070367|ENST00000621441|EXOC5;ENST00000510543.1_1_4:63683420-63684509:+|nuORF;ENST00000554011.5_1_14:57675329-57698504:-|nuORF	ENSG00000070367|ENST00000621441|EXOC5	ENSG00000070367|ENST00000621441|EXOC5	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.7720336914062	2	545.787641	1089.56073	-0.024079	-1.3142E-05	2.1837	0.0011918	2.1596	0.0011787	545.7888405070091	31.767	0.69486	31.767	31.559	32.254	0					20	13	3	0	0	0	0.027441	1	1330	1330		40.778	0	1	32475			44833	1425	37091	37114	48298	48298					0.019531626801381208
QANVTIGLPTK	11	Unmodified	_QANVTIGLPTK_					0	0	0		ENSG00000128602|ENST00000249373|SMO	ENSG00000128602|ENST00000249373|SMO	ENSG00000128602|ENST00000249373|SMO	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.3248291015625	2	571.332413	1140.65027	2.0241	0.0011564	-0.78975	-0.00045121	1.2344	0.00070524	571.3318631416632	91.925	0.33906	91.925	91.753	92.092	0					12	7	2	0	0	0	0.025656	1	9901	9901		26.063	0	1	435120			44834	3893	37092	37115	48299	48299					0.08557372568839128
QAPATQPEQQF	11	Unmodified	_QAPATQPEQQF_					0	0	0			REV__nc|ENSG00000055208|Q9NYJ8-2|TAB2	REV__nc|ENSG00000055208|Q9NYJ8-2|TAB2	MULTI-MSMS	OvCa9_classI_Rep3	3	415.86822509765625	3	415.535048	1243.58332	2.6423	0.001098	-4.4632	-0.0018546	-1.8208	-0.00075662	415.5330543801677	60.489	0.8731	57.39	57.093	57.967	-3.0993					52	25	3	0	0	0	0.72466	1	2056	2056		20.03	0.7678	1	21318	+		44835	16710	37093	37116	48300	48300					-0.02873282712926084
QAPEVKERDD	10	Unmodified	_QAPEVKERDD_					0	0	0		TMOD4|p.L77P|1|0.03|ENSG00000163157|chr1:151174441-151174441|A/G|missense_variant	TMOD4|p.L77P|1|0.03|ENSG00000163157|chr1:151174441-151174441|A/G|missense_variant	TMOD4|p.L77P|1|0.03|ENSG00000163157|chr1:151174441-151174441|A/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	592.7949829101562	2	593.788566	1185.56258	2.1807	0.0012949	-1.164	-0.00069116	1.0167	0.0006037	593.788211155103	95.719	0.54047	95.719	95.328	95.869	0					20	12	2	0	0	0	0.026653	1	10417	10417		41.427	0	1	322510			44836	32968	37094	37117	48301	48301					-0.022778730925665513
QAPKRKMV	8	Unmodified	_QAPKRKMV_					0	0	0		nc|ENSG00000189195|Q5XKL5-4|BTBD8;nc|ENSG00000189195|Q5XKL5|BTBD8	nc|ENSG00000189195|Q5XKL5-4|BTBD8	nc|ENSG00000189195|Q5XKL5-4|BTBD8	MULTI-MSMS	OvCa9_classI_Rep2	2	479.28875732421875	2	479.286754	956.558955	1.7631	0.00084502	2.1442	0.0010277	3.9073	0.0018727	479.2876787398958	28.181	0.755	25.471	25.294	26.049	-2.7097					33	15	3	0	0	0	0.74394	1	588	588		13.775	1.5685	1	110940			44837	15235	37095	37118	48302	48302					0.0789383039053746
QAPQVLPQV	9	Unmodified	_QAPQVLPQV_					0	0	0		nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;nc|ENSG00000060237|Q9H4A3-4|WNK1	nc|ENSG00000060237|Q9H4A3-5|WNK1	nc|ENSG00000060237|Q9H4A3-5|WNK1	MULTI-SECPEP	OvCa9_classI_Rep3	3	489.3111267089844	2	490.282192	978.549831	-1.1263	-0.0005522	0.27783	0.00013622	-0.84847	-0.00041599	490.28213739244796	95.948	0.74117	94.12	93.78	94.521	-1.8286					22	14	2	0	0	0	0.027462	1	6276	6276		20.947	0	1	21673			44838	14880	37096	37119	48303	48303					0.05969760305845284
QAPTLLVAVLL	11	Unmodified	_QAPTLLVAVLL_					0	0	0			REV__tr|A0A553SMD0|A0A553SMD0_NIACIGGDEFdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22335PE=4SV=1	REV__tr|A0A553SMD0|A0A553SMD0_NIACIGGDEFdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22335PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	569.367919921875	2	569.365724	1136.7169	-1.1877	-0.00067625	0.85725	0.00048809	-0.33047	-0.00018816	569.3659980486677	125.01	0.87467	123.62	123.44	124.31	-1.3908					35	16	3	0	0	0	0.66495	1	11878	11878		38.754	0.94209	1	107240	+		44839	30317	37097	37120	48304	48304					0.1540060813074433
QAPTLLVAVLL	11	Unmodified	_QAPTLLVAVLL_					0	0	0			REV__tr|A0A553SMD0|A0A553SMD0_NIACIGGDEFdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22335PE=4SV=1	REV__tr|A0A553SMD0|A0A553SMD0_NIACIGGDEFdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22335PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	569.365724	1136.7169	-0.24937	-0.00014198	0.10117	5.7604E-05	-0.14819	-8.4376E-05	569.3655213955468	123.84	0.98614	123.61	123.34	124.32	-0.23193	-0.032101	0.0002533	NaN	38.754	40	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76733	+		44840	30317	37097	37120							0.1540060813074433
QAPTLLVAVLL	11	Unmodified	_QAPTLLVAVLL_					0	0	0			REV__tr|A0A553SMD0|A0A553SMD0_NIACIGGDEFdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22335PE=4SV=1	REV__tr|A0A553SMD0|A0A553SMD0_NIACIGGDEFdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22335PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	569.365724	1136.7169	1.2256	0.00069783	-1.336	-0.00076069	-0.11041	-6.2865E-05	569.3646839276574	124.74	0.88892	123.69	123.43	124.32	-1.0519	0.051741	-0.0013833	NaN	38.754	40	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95248	+		44841	30317	37097	37120							0.1540060813074433
QAPTLLVAVLL	11	Unmodified	_QAPTLLVAVLL_					0	0	0			REV__tr|A0A553SMD0|A0A553SMD0_NIACIGGDEFdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22335PE=4SV=1	REV__tr|A0A553SMD0|A0A553SMD0_NIACIGGDEFdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22335PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	569.365724	1136.7169	-1.1877	-0.00067625	0.85725	0.00048809	-0.33047	-0.00018816	569.3659980486677	125.01	0.87467	123.62	123.44	124.31	-1.3908	-0.01964	0.0011143	NaN	38.754	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107240	+		44842	30317	37097	37120							0.1540060813074433
QAQELSWEKI	10	Unmodified	_QAQELSWEKI_					0	0	0		nc|ENSG00000156650|Q8WYB5-3|KAT6B;KAT6B|p.F1803Rfs*22|1|0.06|ENSG00000156650|chr10:75030230-75030231|-/CG|frameshift_variant;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B;ENST00000490365.1_1_10:76737066-76741701:+|nuORF	nc|ENSG00000156650|Q8WYB5-3|KAT6B	nc|ENSG00000156650|Q8WYB5-3|KAT6B	MULTI-MSMS	OvCa99_classI_Rep5	1	616.318115234375	2	616.319502	1230.62445	2.0622	0.001271	3.0323	0.0018689	5.0945	0.0031399	616.321332007672	82.781	1.3635	82.781	82.437	83.801	0					66	31	3	0	0	0	0.61787	1	8624	8624		51.193	18.442	1	15653000			44843	5851	37098	37121	48305	48305					0.018364783265724327
QAQFLGPRLT	10	Unmodified	_QAQFLGPRLT_					0	0	0		ENST00000520757.1_1_8:96047742-96087920:+|nuORF;ENST00000517976.5_1_8:96047742-96070162:+|nuORF	ENST00000520757.1_1_8:96047742-96087920:+|nuORF	ENST00000520757.1_1_8:96047742-96087920:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	566.8156127929688	2	565.819473	1129.62439	-0.32895	-0.00018613	0.21553	0.00012195	-0.11341	-6.4172E-05	565.8194437967649	109.81	0.83927	108.67	108.35	109.19	-1.1444					29	15	2	0	0	0	0.026659	1	7908	7908		23.523	0	1	91673			44844	13112	37099	37122	48306	48306					0.06476523117225952
QAQINVLMK	9	Unmodified	_QAQINVLMK_					0	0	0			REV__ENSG00000170920|ENST00000305444|OR7G3	REV__ENSG00000170920|ENST00000305444|OR7G3	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.7987670898438	2	522.797152	1043.57975	-0.43864	-0.00022932	-0.37365	-0.00019534	-0.81229	-0.00042466	522.7969484658958	59.021	1.2408	55.629	55.35	56.591	-3.392					45	24	2	0	0	0	0.56889	1	3910	3910		35.618	0	1	778790	+		44845	21576	37100	37123	48307	48307					0.059703759795411315
QAQRLIRM	8	Unmodified	_QAQRLIRM_					0	0	0		ENSG00000198746|ENST00000361720|GPATCH3	ENSG00000198746|ENST00000361720|GPATCH3	ENSG00000198746|ENST00000361720|GPATCH3	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.33526611328125	2	508.295111	1014.57567	0.18559	9.4336E-05	1.4387	0.0007313	1.6243	0.00082564	508.2982174245223	43.82	1.1435	41.11	40.808	41.951	-2.7097					44	22	4	0	0	0	0.028476	1	2443	2443		19.36	2.8868	1	45062			44846	8865	37101	37124	48308	48308					0.06896331276482215
QARALAALVP	10	Unmodified	_QARALAALVP_					0	0	0		nc|ENSG00000165792|Q9H7H0-2|METTL17;ENSG00000165792|ENST00000339374|METTL17;nc|ENSG00000165792|Q9H7H0-3|METTL17;ENST00000554949.1_1_14:21458161-21458547:+|nuORF;METTL17|p.T89Afs*6|1|0.12|ENSG00000165792|chr14:20990498-20990519|AACACTGACCAGTTATCTCTGG/-|frameshift_variant;ENST00000557701.5_1_14:21458161-21460365:+|nuORF;ENST00000554985.5_1_14:21458161-21460793:+|nuORF;ENST00000553441.5_1_14:21458218-21461351:+|nuORF	nc|ENSG00000165792|Q9H7H0-2|METTL17	nc|ENSG00000165792|Q9H7H0-2|METTL17	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.3041076660156	2	505.311284	1008.60801	0.47509	0.00024007	-0.54013	-0.00027293	-0.065038	-3.2864E-05	505.31058796975003	74.13	0.60912	74.13	73.907	74.517	0					34	15	3	0	0	0	0.027056	1	7279	7279		14.865	10.88	1	3699900			44847	6597	37102	37125	48309	48309					0.10405441951127159
QARQPAIRAV	10	Unmodified	_QARQPAIRAV_					0	0	0			REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.3319091796875	2	555.330539	1108.64652	-0.53059	-0.00029465	0.27865	0.00015474	-0.25195	-0.00013991	555.3306299398113	55.379	1.422	52.085	51.648	53.07	-3.2944					70	27	3	0	0	0	0.66721	1	3478	3478		34.173	3.8548	1	656980	+		44848	17868	37103	37126	48310	48310					0.09654747585636869
QARQPAIRAV	10	Unmodified	_QARQPAIRAV_					0	0	0			REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	555.330539	1108.64652	-0.39403	-0.00021882	1.7488	0.00097116	1.3548	0.00075235	555.3305750506523	54.931	2.0389	52.117	51.573	53.612	-2.8139	0.015968	0.0015967	NaN	34.173	82	40	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211560	+		44849	17868	37103	37126							0.09654747585636869
QARQPAIRAV	10	Unmodified	_QARQPAIRAV_					0	0	0			REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	REV__nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	555.330539	1108.64652	-0.53059	-0.00029465	0.27865	0.00015474	-0.25195	-0.00013991	555.3306299398113	55.379	1.422	52.085	51.648	53.07	-3.2944	-0.015968	-3.6184E-05	NaN	34.173	70	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	656980	+		44850	17868	37103	37126							0.09654747585636869
QARVPTLIRDT	11	Unmodified	_QARVPTLIRDT_					0	0	0			REV__nc|ENSG00000188452|Q49MI3-5|CERKL	REV__nc|ENSG00000188452|Q49MI3-5|CERKL	MULTI-SECPEP	OvCa99_classI_Rep5	1	635.2977294921875	2	635.367318	1268.72008	2.1973	0.0013961	0.86374	0.00054879	3.061	0.0019449	635.3677966601624	137.93	0.66454	137.93	137.54	138.21	0					25	14	2	0	0	0	0.025714	1	16047	16047		31.634	3.752	1	138190	+		44851	15780	37104	37127	48311	48311					0.09647251237447563
QASASRSRSH	10	Unmodified	_QASASRSRSH_					0	0	0			REV__ENST00000542438.1_1_12:120972163-120972500:+|nuORF	REV__ENST00000542438.1_1_12:120972163-120972500:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8114013671875	2	543.773585	1085.53262	-0.28041	-0.00015248	-4.3679	-0.0023751	-4.6483	-0.0025276	543.7710297581947	47.443	0.34461	47.443	47.251	47.595	0					12	7	2	0	0	0	0.026577	1	3402	3402		58.23	10.27	1	440110	+		44852	24489	37105	37128	48312	48312					-0.006727672472152335
QASELLFAAG	10	Unmodified	_QASELLFAAG_					0	0	0			REV__ENSG00000113212|ENST00000231137|PCDHB7	REV__ENSG00000113212|ENST00000231137|PCDHB7	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.2488098144531	2	503.763832	1005.51311	-0.49688	-0.00025031	-4.1193	-0.0020752	-4.6162	-0.0023255	504.2612247194997	38.599	0.30714	38.599	38.486	38.793	0					9	6	2	0	0	0	0.026931	1	2201	2201		17.468	0	1	59997	+		44853	18140	37106	37129	48313	48313					0.010574636892783928
QASLKGGF	8	Unmodified	_QASLKGGF_					0	0	0			REV__ENSG00000146267|ENST00000389677|FAXC	REV__ENSG00000146267|ENST00000389677|FAXC	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.911865234375	2	404.221603	806.428653	0.95017	0.00038408	-0.5189	-0.00020975	0.43127	0.00017433	404.2212263806813	53.977	0.43837	53.977	53.733	54.172	0					16	10	2	0	0	0	0.028476	1	4333	4333		27.882	0	1	149470	+		44854	20004	37107	37130	48314	48314					0.01769557663192245
QATKSVLFVC	10	Unmodified	_QATKSVLFVC_					0	0	0		ENST00000480874.5_1_2:264964-275202:+|nuORF;nc|ENSG00000143727|P24666-4|ACP1;nc|ENSG00000143727|P24666-3|ACP1;nc|ENSG00000143727|P24666-2|ACP1;ENSG00000143727|ENST00000272065|ACP1	ENST00000480874.5_1_2:264964-275202:+|nuORF	ENST00000480874.5_1_2:264964-275202:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	548.29541015625	2	548.296985	1094.57942	-1.4493	-0.00079464	-1.4824	-0.00081281	-2.9317	-0.0016074	548.2961982412694	34.285	4.3001	31.575	31.119	35.419	-2.7097					197	86	6	0	0	0	0.6349	1	1485	1485		37.812	0.65241	1	2359300			44855	5087	37108	37131	48315	48315					0.03590956259699851
QATNLYGLAL	10	Unmodified	_QATNLYGLAL_					0	0	0		ENSG00000175485|ENST00000311352|OR52W1	ENSG00000175485|ENST00000311352|OR52W1	ENSG00000175485|ENST00000311352|OR52W1	MULTI-SECPEP	OvCa9_classI_Rep2	2	533.28271484375	2	532.292756	1062.57096	-0.69191	-0.0003683	1.1368	0.0006051	0.44487	0.0002368	532.2931264294044	92.692	1.3407	91.524	91.235	92.575	-1.168					66	25	4	0	0	0	0.026994	1	8219	8219		25.574	7.2496	1	365100			44856	7548	37109	37132	48316	48316					0.04217725614716983
QATPPILVSDE	11	Unmodified	_QATPPILVSDE_					0	0	0			REV__ENSG00000083093|ENST00000261584|PALB2	REV__ENSG00000083093|ENST00000261584|PALB2	MULTI-MSMS	OvCa9_classI_Rep4_	4	585.302490234375	2	585.306061	1168.59757	-5.4729	-0.0032033	-3.9944	-0.002338	-9.4674	-0.0055413	585.3034369444417	156.16	0.45593	154.67	154.42	154.88	-1.4911					21	14	2	0	0	0	0.71789	1	15449	15449		23.523	4.4192	1	21177	+		44857	17094	37110	37133	48317	48317					0.02001369715412693
QATPPILVSDE	11	Unmodified	_QATPPILVSDE_					0	0	0			REV__ENSG00000083093|ENST00000261584|PALB2	REV__ENSG00000083093|ENST00000261584|PALB2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	585.306061	1168.59757	-7.173	-0.0041984	-3.3274	-0.0019476	-10.5	-0.006146	585.3037048059956	155.76	0.53493	154.69	154.48	155.01	-1.073	0.0066636	0.00053647	NaN	23.523	19	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9870	+		44858	17094	37110	37133							0.02001369715412693
QATPPILVSDE	11	Unmodified	_QATPPILVSDE_					0	0	0			REV__ENSG00000083093|ENST00000261584|PALB2	REV__ENSG00000083093|ENST00000261584|PALB2	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	585.306061	1168.59757	-5.4729	-0.0032033	-3.9944	-0.002338	-9.4674	-0.0055413	585.3034369444417	156.16	0.45593	154.67	154.42	154.88	-1.4911	-0.0066636	-0.00024432	NaN	23.523	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21177	+		44859	17094	37110	37133							0.02001369715412693
QATVASACRF	10	Unmodified	_QATVASACRF_					0	0	0		ENSG00000179832|ENST00000326134|MROH1;ENST00000536221.1_8:145474248-145485625:+|nuORF;nc|ENSG00000179832|Q8NDA8-3|MROH1	ENSG00000179832|ENST00000326134|MROH1	ENSG00000179832|ENST00000326134|MROH1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.7794799804688	2	527.260933	1052.50731	-1.0841	-0.00057158	-3.9153	-0.0020644	-4.9994	-0.002636	527.2570776896421	36.532	0.21997	36.532	36.442	36.662	0					8	4	3	0	0	0	0.027088	1	1949	1949		19.997	7.0376	1	62727			44860	7843	37111	37134	48318	48318					-0.01683958094031368
QATVDTNSL	9	Unmodified	_QATVDTNSL_					0	0	0		nc|ENSG00000064787|O75363-2|BCAS1;nc|ENSG00000064787|O75363|BCAS1;ENSG00000064787|ENST00000688948|BCAS1	nc|ENSG00000064787|O75363-2|BCAS1	nc|ENSG00000064787|O75363-2|BCAS1	MULTI-SECPEP	OvCa9_classI_Rep2	2	474.7720031738281	2	474.735271	947.45599	-2.3251	-0.0011038	2.4067	0.0011426	0.081657	3.8766E-05	474.7362193414924	37.325	1.0333	34.615	34.386	35.419	-2.7097					44	20	3	0	0	0	0.027295	1	1668	1668		54.776	15.523	1	91637			44861	14883	37112	37135	48319	48319					-0.019840035870970496
QAVGHQRPHH	10	Unmodified	_QAVGHQRPHH_					0	0	0		ENST00000482726.5_1_4:724790-728582:+|nuORF;ENST00000400151.6_1_4:724808-727669:+|nuORF;ENST00000362003.9_1_4:724808-731257:+|nuORF	ENST00000482726.5_1_4:724790-728582:+|nuORF	ENST00000482726.5_1_4:724790-728582:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8017578125	2	583.799937	1165.58532	0.97841	0.0005712	4.2393	0.0024749	5.2177	0.0030461	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.86416	1	1462	1462		10.866	1.1599	1	155970			44862	10812	37113	37136	48320	48320					0.00915235606225906
QAVLQSLSQ	9	Unmodified	_QAVLQSLSQ_					0	0	0		nc|ENSG00000137171|Q9NSK0-2|KLC4	nc|ENSG00000137171|Q9NSK0-2|KLC4	nc|ENSG00000137171|Q9NSK0-2|KLC4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.28863525390625	2	487.269281	972.52401	-0.10317	-5.0272E-05	-0.088242	-4.2997E-05	-0.19141	-9.327E-05	487.2691165126096	48.155	1.0278	45.047	44.838	45.866	-3.1077					30	19	2	0	0	0	0.027461	1	2725	2725		25.574	3.6142	1	120740			44863	15038	37114	37137	48321	48321					0.03664866063570571
QAWLLHLHV	9	Unmodified	_QAWLLHLHV_					0	0	0			REV__chr1:155054226-155054316|93|16.47|0.45|5.2|+|0|ADAM15,None|1	REV__chr1:155054226-155054316|93|16.47|0.45|5.2|+|0|ADAM15,None|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.805908203125	2	558.819276	1115.624	-3.6929	-0.0020637	0.095299	5.3255E-05	-3.5976	-0.0020104	558.8193679214754	155.3	1.2491	153.81	153.01	154.26	-1.4911					41	30	2	0	0	0	0.027462	1	15367	15367		20.482	0	1	12124	+		44864	15803	37115	37138	48322	48322					0.07081148188035513
QAWNQISI	8	Unmodified	_QAWNQISI_					0	0	0			REV__ENST00000569289.5_1_16:68059372-68071937:+|nuORF	REV__ENST00000569289.5_1_16:68059372-68071937:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.7796630859375	2	480.250892	958.48723	0.22578	0.00010843	2.723	0.0013077	2.9488	0.0014162	480.2520243934397	64.838	0.44635	64.838	64.588	65.034	0					15	10	2	0	0	0	0.028476	1	5924	5924		60.972	16.595	1	356860	+		44865	27723	37116	37139	48323	48323					0.006326142376565258
QAWVFATLT	9	Unmodified	_QAWVFATLT_					0	0	0		XCR1|p.A33T|1|0.29|ENSG00000173578|chr3:46021851-46021851|C/T|missense_variant	XCR1|p.A33T|1|0.29|ENSG00000173578|chr3:46021851-46021851|C/T|missense_variant	XCR1|p.A33T|1|0.29|ENSG00000173578|chr3:46021851-46021851|C/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.3060913085938	2	518.776742	1035.53893	0.6058	0.00031427	-1.8612	-0.00096554	-1.2554	-0.00065127	518.7757157106428	35.686	1.1982	32.837	32.54	33.739	-2.849					35	23	2	0	0	0	0.027462	1	1210	1210		17.365	0	1	12135			44866	36308	37117	37140	48324	48324					0.022583579315551106
QAWVMRKND	9	Unmodified	_QAWVMRKND_					0	0	0			REV__ENST00000272321.11_2_2:63815801-63815882:-|nuORF	REV__ENST00000272321.11_2_2:63815801-63815882:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	573.3222045898438	2	574.287482	1146.56041	-0.83529	-0.0004797	3.6388	0.0020897	2.8035	0.00161	574.2888360127918	104.34	0.68207	102.22	101.96	102.64	-2.1192					19	12	3	0	0	0	0.027462	1	9414	9414		34.173	0	1	22429	+		44867	24075	37118	37141	48325	48325					-0.007005803113543152
QAYEHIETL	9	Unmodified	_QAYEHIETL_					0	0	0			REV__ENST00000527040.5_1_17:72733375-72740608:+|nuORF	REV__ENST00000527040.5_1_17:72733375-72740608:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	552.2726440429688	2	552.272021	1102.52949	1.3134	0.00072538	2.8582	0.0015785	4.1716	0.0023039	552.2733599052141	138.58	0.57443	138.58	138.31	138.88	0					20	11	3	0	0	0	0.55011	1	16163	16163		37.812	2.6108	1	107000	+		44868	21321	37119	37142	48326	48326					-0.0176745514461345
QAYPTLPLAL	10	Unmodified	_QAYPTLPLAL_					0	0	0			REV__ENSG00000072195|ENST00000312358|SPEG	REV__ENSG00000072195|ENST00000312358|SPEG	MSMS	OvCa99_classI_Rep5	1	543.8128662109375	2	543.813325	1085.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.122	1	70.122	69.622	70.622	0								0	0	0	0.089874	1	6706	6706		74.255	3.4388	1		+		44869	16913	37120	37143	48327	48327					0.07271486654190085
QCACPGSVLS	10	Carbamidomethyl (C)	_QCAC(Carbamidomethyl (C))PGSVLS_	QC(0.158)AC(0.842)PGSVLS		QC(-7.3)AC(7.3)PGSVLS		0	1	0		ENST00000476588.5_1_3:93781949-93803329:+|nuORF	ENST00000476588.5_1_3:93781949-93803329:+|nuORF	ENST00000476588.5_1_3:93781949-93803329:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	511.2264099121094	2	511.225702	1020.43685	-0.5954	-0.00030438	1.651	0.00084402	1.0556	0.00053964	511.22654559235866	37.738	1.5325	37.738	37.485	39.017	0					80	33	5	0	0	0	0.48198	1	2098	2098		56.721	8.7615	2	7687600			44870	12468	37121	37144	48328	48328	144				-0.07254999473991575
QCANPLLELT	10	Unmodified	_QCANPLLELT_					0	0	0		ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	MULTI-SECPEP	OvCa9_classI_Rep2	2	550.3258056640625	2	551.284074	1100.5536	-0.98823	-0.00054479	-0.35707	-0.00019685	-1.3453	-0.00074164	551.2855970675522	85.415	0.19707	83.924	83.801	83.998	-1.4906					5	3	2	0	0	0	0.026681	1	7390	7390		44.377	15.228	1	7464.3			44871	3379	37122	37145	48329	48329					0.007340620173863499
QCARPGPA	8	Unmodified	_QCARPGPA_					0	0	0		ENSG00000142178|ENST00000270162|SIK1	ENSG00000142178|ENST00000270162|SIK1	ENSG00000142178|ENST00000270162|SIK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.5781555175781	2	400.197605	798.380657	1.5296	0.00061214	2.8469	0.0011393	4.3765	0.0017515	400.19901265214975	32.576	0.78522	32.576	32.204	32.989	0					32	15	3	0	0	0	0.028476	1	1414	1414		21.702	12.88	1	102010			44872	4958	37123	37146	48330	48330					-0.02659839528507746
QCCSFKLLV	9	Unmodified	_QCCSFKLLV_					0	0	0		ENSG00000143669|ENST00000389793|LYST;nc|ENSG00000143669|Q99698-3|LYST;ENST00000465349.5_1_1:235954948-235996891:-|nuORF;nc|ENSG00000143669|Q99698-2|LYST;ENST00000489585.5_1_1:235926109-235996891:-|nuORF	ENSG00000143669|ENST00000389793|LYST	ENSG00000143669|ENST00000389793|LYST	MULTI-MSMS	OvCa99_classI_Rep5	1	520.76806640625	2	520.767006	1039.51946	0.016547	8.6173E-06	-0.80559	-0.00041952	-0.78904	-0.00041091	520.7665795556696	73.986	3.2446	73.986	73.678	76.922	0					206	81	5	0	0	0	0.48324	1	7416	7416		44.117	0	1	128020000			44873	5084	37124	37147	48331	48331					0.001279423247979139
QCDACFKNDEE	11	Unmodified	_QCDACFKNDEE_					0	0	0			REV__ENSG00000084070|ENST00000372718|SMAP2	REV__ENSG00000084070|ENST00000372718|SMAP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	433.91851806640625	3	434.497277	1300.47	2.7704	0.0012037	-4.4434	-0.0019307	-1.673	-0.00072691	434.4951547672794	99.736	0.87447	99.736	99.488	100.36	0					41	20	3	0	0	0	0.025722	1	11011	11011		27.644	0.89421	1	1085100	+		44874	17115	37125	37148	48332	48332					-0.16821462212601546
QCDSLLGFPV	10	Unmodified	_QCDSLLGFPV_					0	0	0			REV__ENSG00000205667|ENST00000381130|ARSH	REV__ENSG00000205667|ENST00000381130|ARSH	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.2412109375	2	539.765517	1077.51648	-0.5373	-0.00029002	-3.0477	-0.001645	-3.585	-0.0019351	539.7637806752972	29.077	1.7469	29.077	28.439	30.186	0					60	34	2	0	0	0	0.026915	1	1129	1129		27.882	0	1	106140	+		44875	23221	37126	37149	48333	48333					-0.019176095283455652
QCERDRVPN	9	Unmodified	_QCERDRVPN_					0	0	0			REV__ENSG00000122735|ENST00000242317|DNAI1	REV__ENSG00000122735|ENST00000242317|DNAI1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	558.8147583007812	2	558.764372	1115.51419	-1.1684	-0.00065287	-0.46346	-0.00025897	-1.6319	-0.00091183	558.7639203043856	49.291	1.2473	46.15	45.832	47.079	-3.1416					62	23	4	0	0	0	0.027462	1	2799	2799		47.657	6.8792	1	236950	+		44876	18612	37127	37150	48334	48334					-0.03894645213449621
QCERDRVPN	9	Unmodified	_QCERDRVPN_					0	0	0			REV__ENSG00000122735|ENST00000242317|DNAI1	REV__ENSG00000122735|ENST00000242317|DNAI1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	558.764372	1115.51419	-0.35792	-0.00019999	-1.4666	-0.0008195	-1.8246	-0.0010195	558.7634044635942	49.011	1.1379	46.251	45.929	47.067	-2.7603	0.050615	-0.00066622	NaN	47.657	28	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43511	+		44877	18612	37127	37150							-0.03894645213449621
QCFCFVQY	8	Unmodified	_QCFCFVQY_					0	0	0			REV__ENST00000541795.1_1_11:73441692-73471680:-|nuORF	REV__ENST00000541795.1_1_11:73441692-73471680:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.2764282226562	2	519.214606	1036.41466	-0.55471	-0.00028801	2.6685	0.0013855	2.1138	0.0010975	519.2157908564493	117.32	0.7931	116.29	115.99	116.79	-1.0324					28	15	3	0	0	0	0.028476	1	8809	8809		33.516	6.7195	1	23310	+		44878	27376	37128	37151	48335	48335					-0.10209179151752323
QCFITALRR	9	Unmodified	_QCFITALRR_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.8285522460938	2	554.308218	1106.60188	-0.37609	-0.00020847	-4.4827	-0.0024848	-4.8587	-0.0026932	554.3060416080209	65.648	0.33884	62.162	61.987	62.325	-3.4854					11	6	2	0	0	0	0.027462	1	4751	4751		24.203	1.1603	1	23940	+		44879	22662	37129	37152	48336	48336					0.052846004479533804
QCFPHMPHSP	10	Unmodified	_QCFPHMPHSP_					0	0	0			REV__ENST00000584924.5_1_17:46266844-46474114:-|nuORF	REV__ENST00000584924.5_1_17:46266844-46474114:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	590.2940673828125	2	590.754961	1179.49537	-2.4895	-0.0014707	-0.14255	-8.4211E-05	-2.632	-0.0015549	590.7547656749905	104.16	0.60094	104.16	103.94	104.54	0					29	13	3	0	0	0	0.026891	1	11639	11639		31.53	5.9558	1	510270	+		44880	27850	37130	37153	48337	48337					-0.08719898108870439
QCGGNGYN	8	Unmodified	_QCGGNGYN_					0	0	0			REV__ENSG00000146197|ENST00000274938|SCUBE3;REV__ENSG00000159307|ENST00000360835|SCUBE1	REV__ENSG00000146197|ENST00000274938|SCUBE3	MULTI-MSMS	OvCa9_classI_Rep4_	4	406.6526184082031	2	406.653227	811.291901	3.7395	0.0015207	-4.3826	-0.0017822	-0.64314	-0.00026153	406.65135395034685	136.49	1.1683	134.94	134.55	135.72	-1.5437					37	23	2	0	0	0	0.73136	1	13233	13233		8.2313	3.1444	1	49074	+		44881	19998;20607	37131	37154	48338	48338					-0.12129299558841922
QCHRPVAKPML	11	Unmodified	_QCHRPVAKPML_					0	0	0			REV__nc|ENSG00000015532|Q9H1B5-2|XYLT2	REV__nc|ENSG00000015532|Q9H1B5-2|XYLT2	MULTI-MSMS	OvCa9_classI_Rep2	2	427.229736328125	3	427.230249	1278.66892	-1.4138	-0.00060401	0.62411	0.00026664	-0.78967	-0.00033737	427.2304810859985	51.934	1.8295	49.121	48.7	50.53	-2.8129					82	36	3	0	0	0	0.69735	1	3439	3439		30.569	2.4874	1	324920	+		44882	16520	37132	37155	48339	48339					0.04072887667393843
QCHVTGMLL	9	Unmodified	_QCHVTGMLL_					0	0	0			REV__ENSG00000116793|ENST00000369604|PHTF1	REV__ENSG00000116793|ENST00000369604|PHTF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.7188415527344	2	501.24898	1000.48341	-0.56544	-0.00028343	-0.78043	-0.00039119	-1.3459	-0.00067462	501.24876046408485	39.344	0.31202	39.344	39.151	39.463	0					10	6	2	0	0	0	0.027462	1	2286	2286		42.396	0	1	67005	+		44883	18320	37133	37156	48340	48340					-0.01681514852032251
QCKASCAGHGW	11	Carbamidomethyl (C)	_QC(Carbamidomethyl (C))KASCAGHGW_	QC(1)KASCAGHGW		QC(36)KASC(-36)AGHGW		0	1	0			REV__ENST00000526570.5_1_8:38271148-38285795:-|nuORF	REV__ENST00000526570.5_1_8:38271148-38285795:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	602.7533569335938	2	602.75295	1203.49135	2.9023	0.0017493	-2.9019	-0.0017491	0.00032432	1.9548E-07	602.7512292710113	86.485	0.57005	86.485	86.231	86.801	0					32	13	3	0	0	0	0.41398	1	9128	9128		60.118	21.365	2	1110200	+		44884	27142	37134	37157	48341	48341	336				-0.10225987602598252
QCKRGCVLL	9	Carbamidomethyl (C)	_QCKRGC(Carbamidomethyl (C))VLL_	QC(0.085)KRGC(0.915)VLL		QC(-10)KRGC(10)VLL		0	1	0			REV__ENST00000481994.1_1_7:70229918-70239316:+|nuORF	REV__ENST00000481994.1_1_7:70229918-70239316:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.8272705078125	2	538.788804	1075.56305	-0.43372	-0.00023369	2.4115	0.0012993	1.9778	0.0010656	538.7902748537915	92.641	0.90111	90.679	90.378	91.279	-1.9617					34	18	3	0	0	0	0.027326	1	5944	5944		65.803	25.025	2	181100	+		44885	26493	37135	37158	48342	48342	327				0.028295518219238147
QCLIKLLPS	9	Unmodified	_QCLIKLLPS_					0	0	0		nc|ENSG00000168297|Q7Z7A4-5|PXK;nc|ENSG00000168297|Q7Z7A4-7|PXK;nc|ENSG00000168297|Q7Z7A4-2|PXK;nc|ENSG00000168297|Q7Z7A4-6|PXK;nc|ENSG00000168297|Q7Z7A4-4|PXK;ENSG00000168297|ENST00000356151|PXK	nc|ENSG00000168297|Q7Z7A4-5|PXK	nc|ENSG00000168297|Q7Z7A4-5|PXK	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7319030761719	2	507.804445	1013.59434	0.18208	9.2461E-05	2.8908	0.001468	3.0729	0.0015604	507.80611693942893	62.382	0.69552	62.382	62.081	62.777	0					27	16	2	0	0	0	0.027462	1	5596	5596		24.519	0	1	533760			44886	6888	37136	37159	48343	48343					0.08808448127683732
QCLRLMDRV	9	Oxidation (M)	_QCLRLM(Oxidation (M))DRV_		QCLRLM(1)DRV		QCLRLM(85)DRV	0	0	1			REV__OTOF|p.K824M|1|0.33|ENSG00000115155|chr2:26477224-26477224|T/A|missense_variant	REV__OTOF|p.K824M|1|0.33|ENSG00000115155|chr2:26477224-26477224|T/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	575.29833984375	2	575.296993	1148.57943	-0.84795	-0.00048782	2.9865	0.0017181	2.1386	0.0012303	575.2986924624174	97.666	0.7856	96.707	96.365	97.15	-0.95856					51	15	4	0	0	0	0.14998	1	8842	8842		84.916	9.8722	1	1043800	+		44887	29272	37137	37160	48344	48344		645			0.011086329880072299
QCLRLMDRV	9	Oxidation (M)	_QCLRLM(Oxidation (M))DRV_		QCLRLM(1)DRV		QCLRLM(64)DRV	0	0	1			REV__OTOF|p.K824M|1|0.33|ENSG00000115155|chr2:26477224-26477224|T/A|missense_variant	REV__OTOF|p.K824M|1|0.33|ENSG00000115155|chr2:26477224-26477224|T/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	575.299560546875	2	575.296993	1148.57943	-0.91232	-0.00052485	3.2437	0.0018661	2.3313	0.0013412	575.2987938975226	98.512	0.72591	96.752	96.417	97.143	-1.7595					43	13	4	0	0	0	0.28934	1	6598	6598		64.207	9.4849	1	1521200	+		44888	29272	37137	37160	48345	48345		645			0.011086329880072299
QCQAPGQPLGP	11	Unmodified	_QCQAPGQPLGP_					0	0	0		ENST00000382172.3_1_13:24460628-24463343:-|nuORF	ENST00000382172.3_1_13:24460628-24463343:-|nuORF	ENST00000382172.3_1_13:24460628-24463343:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.2816772460938	2	548.266216	1094.51788	1.0922	0.00059882	-2.9564	-0.0016209	-1.8642	-0.0010221	548.2641180933531	144.67	0.38612	144.67	144.5	144.89	0					10	7	2	0	0	0	0.026056	1	16923	16923		14.865	0	1	30245			44889	11177	37138	37161	48346	48346					-0.025599754396125718
QCQGWKYW	8	Unmodified	_QCQGWKYW_					0	0	0		sp|Q6SW94|VGLI_HCMVMUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL37PE=3SV=1	sp|Q6SW94|VGLI_HCMVMUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL37PE=3SV=1	sp|Q6SW94|VGLI_HCMVMUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL37PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.8330078125	2	549.744919	1097.47529	-1.43	-0.00078612	-4.1551	-0.0022842	-5.5851	-0.0030704	549.742531491296	72.483	1.4552	69.087	68.862	70.317	-3.3961					62	29	3	0	0	0	0.028476	1	5617	5617		17.365	0	1	284380			44890	32911	37139	37162	48347	48347					-0.06955325777198595
QCQNWTITL	9	Carbamidomethyl (C)	_QC(Carbamidomethyl (C))QNWTITL_	QC(1)QNWTITL		QC(82)QNWTITL		0	1	0		nc|ENSG00000198797|Q9C0B6-2|BRINP2;ENST00000478325.1_1_1:177226076-177250661:+|nuORF;ENSG00000198797|ENST00000361539|BRINP2	nc|ENSG00000198797|Q9C0B6-2|BRINP2	nc|ENSG00000198797|Q9C0B6-2|BRINP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	582.2836303710938	2	582.279323	1162.54409	-1.1627	-0.00067702	3.2194	0.0018746	2.0567	0.0011976	582.2812564143637	46.548	1.6391	43.475	42.927	44.566	-3.0724					71	31	3	0	0	0	0.16562	1	2450	2450		82.241	7.9855	1	1597200			44891	8876	37140	37163	48348	48348	89				-0.030677062681206735
QCRFPRRLV	9	Unmodified	_QCRFPRRLV_					0	0	0		ENSG00000176153|ENST00000389614|GPX2	ENSG00000176153|ENST00000389614|GPX2	ENSG00000176153|ENST00000389614|GPX2	MULTI-SECPEP	OvCa9_classI_Rep2	2	587.8128051757812	2	587.834934	1173.65532	-0.67373	-0.00039604	0.47586	0.00027973	-0.19787	-0.00011631	588.337729294323	98.426	0.24863	97.533	97.459	97.707	-0.89305					6	4	2	0	0	0	0.027462	1	8951	8951		37.159	5.6293	1	5446.3			44892	7586	37141	37164	48349	48349					0.07543397950485087
QCRHVRKKNEP	11	Unmodified	_QCRHVRKKNEP_					0	0	0			REV__nc|ENSG00000118263|O75840-2|KLF7	REV__nc|ENSG00000118263|O75840-2|KLF7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.256591796875	3	465.585971	1393.73608	-0.40251	-0.0001874	-2.2607	-0.0010525	-2.6632	-0.0012399	465.5846196822545	66.632	0.24616	63.142	63.049	63.295	-3.4902					6	4	2	0	0	0	0.026101	1	4862	4862		26.75	0	1	10950	+		44893	18389	37142	37165	48350	48350					0.05496634202700079
QCSRVLSLL	9	Unmodified	_QCSRVLSLL_					0	0	0		nc|ENSG00000188848|Q6ZU67-5|BEND4;nc|ENSG00000188848|Q6ZU67-4|BEND4;nc|ENSG00000188848|Q6ZU67-2|BEND4;ENSG00000188848|ENST00000502486|BEND4;nc|ENSG00000188848|Q6ZU67-3|BEND4	nc|ENSG00000188848|Q6ZU67-5|BEND4	nc|ENSG00000188848|Q6ZU67-5|BEND4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.79022216796875	2	509.789327	1017.5641	-1.2481	-0.00063625	1.5726	0.00080168	0.32451	0.00016543	509.7899062208812	43.054	0.63008	40.047	39.853	40.483	-3.0074					18	11	2	0	0	0	0.027462	1	2075	2075		30.318	10.958	1	51151			44894	8510	37143	37166	48351	48351					0.05602089462513504
QCSSEAPSG	9	Unmodified	_QCSSEAPSG_					0	0	0			REV__nc|ENSG00000148481|Q9H8M7-2|MINDY3	REV__nc|ENSG00000148481|Q9H8M7-2|MINDY3	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1721496582031	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.65371	1	1292	1292		25.574	2.5316	1	60065	+		44895	20112	37144	37167	48352	48352					-0.10924467452775843
QCWHSPTLL	9	Unmodified	_QCWHSPTLL_					0	0	0			REV__ENST00000602976.1_1_3:9799239-9799572:+|nuORF	REV__ENST00000602976.1_1_3:9799239-9799572:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.7236938476562	2	542.765852	1083.51715	-2.8095	-0.0015249	3.1823	0.0017273	0.37285	0.00020237	542.7673292950209	49.552	0.56873	46.41	46.251	46.82	-3.1416					20	10	2	0	0	0	0.027462	1	2830	2830		19.997	0	1	49900	+		44896	28047	37145	37168	48353	48353					-0.021267700886483
QCWVFGVI	8	Unmodified	_QCWVFGVI_					0	0	0		nc|ENSG00000156471|P48651-3|PTDSS1;nc|ENSG00000156471|P48651-2|PTDSS1;ENSG00000156471|ENST00000517309|PTDSS1	nc|ENSG00000156471|P48651-3|PTDSS1	nc|ENSG00000156471|P48651-3|PTDSS1	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.7811584472656	2	476.241481	950.468409	-0.21846	-0.00010404	-2.8372	-0.0013512	-3.0557	-0.0014552	476.2400520821832	114.61	0.39462	114.5	114.21	114.6	-0.11777					9	7	2	0	0	0	0.028476	1	10889	10889		26.796	10.091	1	7950.3			44897	5841	37146	37169	48354	48354					-0.008806386577361991
QCWVFGVI	8	Unmodified	_QCWVFGVI_					0	0	0		nc|ENSG00000156471|P48651-3|PTDSS1;nc|ENSG00000156471|P48651-2|PTDSS1;ENSG00000156471|ENST00000517309|PTDSS1	nc|ENSG00000156471|P48651-3|PTDSS1	nc|ENSG00000156471|P48651-3|PTDSS1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	476.241481	950.468409	0.51471	0.00024513	-3.6945	-0.0017595	-3.1798	-0.0015143	476.2395196251279	115.31	0.69076	114.25	114.04	114.74	-1.055	-0.093715	-0.00011762	NaN	35.201	14	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7674.6			44898	5841	37146	37169							-0.008806386577361991
QDAAKQLEGKL	11	Unmodified	_QDAAKQLEGKL_					0	0	0			REV__tr|A0A553SJ79|A0A553SJ79_NIACIPTSsugartransportersubunitIIBOS=NialliacirculansOX=1397GN=CEQ21_16325PE=4SV=1	REV__tr|A0A553SJ79|A0A553SJ79_NIACIPTSsugartransportersubunitIIBOS=NialliacirculansOX=1397GN=CEQ21_16325PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	601.7951049804688	2	600.832777	1199.651	0.57037	0.0003427	-1.2222	-0.00073435	-0.65186	-0.00039166	600.8318947297404	78.148	1.1412	75.332	75.116	76.257	-2.8165					43	23	3	0	0	0	0.025406	1	6377	6377		38.754	14.522	1	115110	+		44899	29975	37147	37170	48355	48355					0.05916167217901602
QDAAKQLEGKL	11	Unmodified	_QDAAKQLEGKL_					0	0	0			REV__tr|A0A553SJ79|A0A553SJ79_NIACIPTSsugartransportersubunitIIBOS=NialliacirculansOX=1397GN=CEQ21_16325PE=4SV=1	REV__tr|A0A553SJ79|A0A553SJ79_NIACIPTSsugartransportersubunitIIBOS=NialliacirculansOX=1397GN=CEQ21_16325PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	600.832777	1199.651	-0.92401	-0.00055518	0.24289	0.00014593	-0.68112	-0.00040924	600.8328029697586	77.036	1.1484	75.247	74.946	76.094	-1.7894	0.10273	0.0011943	NaN	38.754	51	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77771	+		44900	29975	37147	37170							0.05916167217901602
QDAAKQLEGKL	11	Unmodified	_QDAAKQLEGKL_					0	0	0			REV__tr|A0A553SJ79|A0A553SJ79_NIACIPTSsugartransportersubunitIIBOS=NialliacirculansOX=1397GN=CEQ21_16325PE=4SV=1	REV__tr|A0A553SJ79|A0A553SJ79_NIACIPTSsugartransportersubunitIIBOS=NialliacirculansOX=1397GN=CEQ21_16325PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	600.832777	1199.651	1.1134	0.000669	-1.3268	-0.00079719	-0.21337	-0.0001282	600.8318339543059	77.226	1.1726	74.854	74.558	75.73	-2.3715	-0.28995	-0.00069192	NaN	38.754	46	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104130	+		44901	29975	37147	37170							0.05916167217901602
QDAFDVIIT	9	Unmodified	_QDAFDVIIT_					0	0	0		ENSG00000116649|ENST00000376957|SRM	ENSG00000116649|ENST00000376957|SRM	ENSG00000116649|ENST00000376957|SRM	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.95440673828125	2	511.263665	1020.51278	-0.77415	-0.00039579	3.0436	0.0015561	2.2695	0.0011603	511.7666776657912	48.421	0.2509	45.661	45.528	45.779	-2.7603					7	4	2	0	0	0	0.027462	1	3016	3016		34.173	15.069	1	9764.4			44902	3190	37148	37171	48356	48356					0.003340439694284214
QDAHEFLI	8	Unmodified	_QDAHEFLI_					0	0	0		nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22;ENSG00000273820|ENST00000621775|USP27X;ENSG00000247746|ENST00000500968|USP51	nc|ENSG00000124422|Q9UPT9-2|USP22	nc|ENSG00000124422|Q9UPT9-2|USP22	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.2911682128906	2	486.742899	971.471246	-0.22589	-0.00010995	-3.0723	-0.0014954	-3.2982	-0.0016054	486.74093787296056	46.465	0.84353	43.756	43.448	44.291	-2.7097					37	16	3	0	0	0	0.028476	1	2781	2781		38.806	1.647	1	69205			44903	3649	37149	37172	48357	48357					-0.01563091999230437
QDAHEFLI	8	Unmodified	_QDAHEFLI_					0	0	0		nc|ENSG00000124422|Q9UPT9-2|USP22;ENSG00000124422|ENST00000261497|USP22;ENSG00000273820|ENST00000621775|USP27X;ENSG00000247746|ENST00000500968|USP51	nc|ENSG00000124422|Q9UPT9-2|USP22	nc|ENSG00000124422|Q9UPT9-2|USP22	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.2914733886719	2	486.742899	971.471246	-0.41628	-0.00020262	-3.4639	-0.0016861	-3.8802	-0.0018887	486.7410399017421	46.496	1.2414	43.424	42.876	44.117	-3.0724					52	23	3	0	0	0	0.028476	1	2497	2497		40.573	0	1	415680			44904	3649	37149	37172	48358	48358					-0.01563091999230437
QDAIPTVWP	9	Unmodified	_QDAIPTVWP_					0	0	0			REV__nc|ENSG00000148484|Q15404-2|RSU1	REV__nc|ENSG00000148484|Q15404-2|RSU1	MULTI-MSMS	OvCa99_classI_Rep5	1	513.7677001953125	2	513.766374	1025.5182	2.2837	0.0011733	-0.60856	-0.00031266	1.6751	0.00086063	513.7662210036555	108.15	1.0298	108.15	107.86	108.89	0					48	23	3	0	0	0	0.48324	1	12208	12208		44.117	0	1	2398600	+		44905	20114	37150	37173	48359	48359					0.006457675518731776
QDAPEEVR	8	Unmodified	_QDAPEEVR_					0	0	0		ENST00000539856.5_1_11:94704113-94705349:-|nuORF;ENSG00000150316|ENST00000279839|CWC15	ENST00000539856.5_1_11:94704113-94705349:-|nuORF	ENST00000539856.5_1_11:94704113-94705349:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.2882080078125	2	472.227613	942.440674	0.61004	0.00028808	2.483	0.0011726	3.0931	0.0014606	472.22800203766076	72.357	0.55615	72.357	72.208	72.764	0					17	13	2	0	0	0	0.028476	1	7098	7098		34.173	3.6689	1	228280			44906	5503	37151	37174	48360	48360					-0.03284870384288752
QDAPINFKL	9	Unmodified	_QDAPINFKL_					0	0	0			REV__nc|ENSG00000166391|Q3SYC2-2|MOGAT2	REV__nc|ENSG00000166391|Q3SYC2-2|MOGAT2	MULTI-MSMS	OvCa9_classI_Rep2	2	523.2863159179688	2	523.287474	1044.5604	-0.092001	-4.8143E-05	-0.66472	-0.00034784	-0.75672	-0.00039598	523.2870336895712	94.827	1.3785	93.728	93.165	94.543	-1.0995					51	27	2	0	0	0	0.37135	1	8520	8520		54.776	0	1	501140	+		44907	21186	37152	37175	48361	48361					0.03989742960266085
QDAPINFKL	9	Unmodified	_QDAPINFKL_					0	0	0			REV__nc|ENSG00000166391|Q3SYC2-2|MOGAT2	REV__nc|ENSG00000166391|Q3SYC2-2|MOGAT2	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.2887573242188	2	523.287474	1044.5604	-0.58139	-0.00030423	0.050099	2.6216E-05	-0.53129	-0.00027802	523.2872096280854	96.142	1.4069	93.717	93.254	94.661	-2.4256					59	27	3	0	0	0	0.46356	1	8512	8512		45.972	0	1	600950	+		44908	21186	37152	37175	48362	48362					0.03989742960266085
QDATETLEPR	10	Unmodified	_QDATETLEPR_					0	0	0			REV__nc|ENSG00000112769|Q16363-2|LAMA4	REV__nc|ENSG00000112769|Q16363-2|LAMA4	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.3187255859375	2	580.283117	1158.55168	-0.6978	-0.00040492	-0.14981	-8.6931E-05	-0.84761	-0.00049185	580.283638110839	61.267	0.26069	61.267	61.071	61.332	0					6	5	2	0	0	0	0.027001	1	5364	5364		35.152	9.7019	1	96907	+		44909	18117	37153	37176	48363	48363					-0.021252754668466878
QDAWKVIE	8	Unmodified	_QDAWKVIE_					0	0	0			REV__tr|A0A7D6VYY6|A0A7D6VYY6_9CLOTRibonucleaseROS=ClostridiumintestinaleOX=36845GN=rnrPE=3SV=1	REV__tr|A0A7D6VYY6|A0A7D6VYY6_9CLOTRibonucleaseROS=ClostridiumintestinaleOX=36845GN=rnrPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.7879333496094	2	494.758549	987.502546	-0.81749	-0.00040446	3.0074	0.0014879	2.1899	0.0010835	494.7604016120646	53.872	0.81839	50.624	50.364	51.183	-3.2474					26	15	2	0	0	0	0.028476	1	3371	3371		55.504	28.811	1	81575	+		44910	31829	37154	37177	48364	48364					0.008294810348502324
QDAYSQIL	8	Unmodified	_QDAYSQIL_					0	0	0			REV__ENSG00000100565|ENST00000689127|LRRC74A	REV__ENSG00000100565|ENST00000689127|LRRC74A	MULTI-SECPEP	OvCa9_classI_Rep2	2	469.8173828125	2	469.234907	936.455261	0.79134	0.00037133	3.655	0.0017151	4.4464	0.0020864	469.2365034825579	130.31	0.39545	130.08	129.81	130.21	-0.22696					11	7	2	0	0	0	0.028476	1	12804	12804		45.952	3.4775	1	17091	+		44911	17431	37155	37178	48365	48365					-0.015507982361441464
QDCLRRIKA	9	Unmodified	_QDCLRRIKA_					0	0	0		ENSG00000167393|ENST00000390665|PPP2R3B	ENSG00000167393|ENST00000390665|PPP2R3B	ENSG00000167393|ENST00000390665|PPP2R3B	MULTI-SECPEP	OvCa9_classI_Rep3	3	551.8345336914062	2	551.811125	1101.6077	-0.38496	-0.00021242	2.291	0.0012642	1.906	0.0010518	551.811131991369	108.31	0.51918	107.12	106.8	107.32	-1.1978					10	9	2	0	0	0	0.027462	1	7742	7742		51.335	5.3632	1	14087			44912	6786	37156	37179	48366	48366					0.06095698959620677
QDCNKKVID	9	Unmodified	_QDCNKKVID_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.8173217773438	2	531.766049	1061.51754	-0.29867	-0.00015882	-3.5072	-0.001865	-3.8059	-0.0020238	531.7640229413946	48.963	0.48871	48.963	48.63	49.119	0					14	10	2	0	0	0	0.027403	1	3622	3622		69.628	0	1	180070			44913	4134	37157	37180	48367	48367					-0.010753951594551836
QDDEEDEEE	9	Unmodified	_QDDEEDEEE_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2759399414062	2	569.188745	1136.36294	-0.081214	-4.6226E-05	-3.0197	-0.0017188	-3.1009	-0.001765	569.1878551273577	56.559	0.20238	56.559	56.459	56.662	0					6	4	2	0	0	0	0.027462	1	4708	4708		10.265	4.3441	1	147600	+		44914	17152	37158	37181	48368	48368					-0.19979017621653838
QDDGVRRDL	9	Unmodified	_QDDGVRRDL_					0	0	0		ENST00000568961.5_1_16:71893652-71893826:-|nuORF	ENST00000568961.5_1_16:71893652-71893826:-|nuORF	ENST00000568961.5_1_16:71893652-71893826:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.8054809570312	2	537.270344	1072.52613	2.4534	0.0013182	-3.0119	-0.0016182	-0.55846	-0.00030005	537.2685084562689	84.384	0.58118	84.384	84.177	84.758	0					22	13	3	0	0	0	0.027453	1	8809	8809		37.812	0	1	231010			44915	13875	37159	37182	48369	48369					-0.007227051986319566
QDDHGYISREF	11	Unmodified	_QDDHGYISREF_					0	0	0		ENSG00000160202|ENST00000291554|CRYAA	ENSG00000160202|ENST00000291554|CRYAA	ENSG00000160202|ENST00000291554|CRYAA	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.9244384765625	3	456.205591	1365.59494	0.23017	0.00010501	3.5788	0.0016327	3.809	0.0017377	456.2072896655181	31.483	0.29712	31.483	31.311	31.608	0					8	5	2	0	0	0	0.025988	1	1306	1306		25.892	11.806	1	20106			44916	6045	37160	37183	48370	48370					-0.07323085689608888
QDDSDVKFET	10	Unmodified	_QDDSDVKFET_					0	0	0			REV__ENSG00000172270|ENST00000333511|BSG	REV__ENSG00000172270|ENST00000333511|BSG	MULTI-SECPEP	OvCa99_classI_Rep5	1	591.3211669921875	2	592.259308	1182.50406	2.2255	0.001318	-0.61904	-0.00036663	1.6064	0.00095141	592.7599835144432	87.741	0.45895	87.741	87.463	87.921	0					14	10	2	0	0	0	0.026685	1	9330	9330		50.034	0	1	125720	+		44917	21687	37161	37184	48371	48371					-0.0798897445770308
QDDTLVLII	9	Unmodified	_QDDTLVLII_					0	0	0			REV__ENST00000463221.2_1_20:46318868-46386107:-|nuORF	REV__ENST00000463221.2_1_20:46318868-46386107:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.3369750976562	2	515.294965	1028.57538	0.30497	0.00015715	0.75662	0.00038988	1.0616	0.00054703	515.2951845019057	45.504	0.77571	45.504	45.159	45.934	0					42	17	3	0	0	0	0.027461	1	3190	3190		49.442	5.3247	1	572340	+		44918	19462	37162	37185	48372	48372					0.06223190037621862
QDDYCSGSV	9	Unmodified	_QDDYCSGSV_					0	0	0		ENSG00000138834|ENST00000610761|MAPK8IP3;nc|ENSG00000138834|Q9UPT6|MAPK8IP3;nc|ENSG00000138834|Q9UPT6-2|MAPK8IP3	ENSG00000138834|ENST00000610761|MAPK8IP3	ENSG00000138834|ENST00000610761|MAPK8IP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.7354736328125	2	487.182014	972.349476	3.1521	0.0015357	-3.405	-0.0016588	-0.25282	-0.00012317	487.18026235671795	88.542	0.4593	88.542	88.384	88.843	0					14	10	2	0	0	0	0.027462	1	9434	9434		14.137	0	1	231190			44919	4737	37163	37186	48373	48373					-0.13780502143924878
QDEEDDLF	8	Unmodified	_QDEEDDLF_					0	0	0			REV__ENSG00000112118|ENST00000596288|MCM3	REV__ENSG00000112118|ENST00000596288|MCM3	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.3082580566406	2	505.701094	1009.38764	1.8192	0.00091995	-2.6835	-0.001357	-0.86434	-0.0004371	505.69953035714775	78.018	0.37317	78.018	77.801	78.174	0					18	8	3	0	0	0	0.028476	1	7886	7886		31.955	11.473	1	461480	+		44920	18075	37164	37187	48374	48374					-0.11668292957619997
QDEELSPEQK	10	Unmodified	_QDEELSPEQK_					0	0	0		tr|A0A553ST48|A0A553ST48_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04300PE=4SV=1	tr|A0A553ST48|A0A553ST48_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04300PE=4SV=1	tr|A0A553ST48|A0A553ST48_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04300PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.9043884277344	3	401.522697	1201.54626	1.3112	0.00052648	3.4706	0.0013935	4.7819	0.00192	401.52401215346976	52.942	0.60443	52.942	52.784	53.389	0					30	13	3	0	0	0	0.026872	1	4206	4206		68.626	16.459	1	782090			44921	34454	37165	37188	48375	48375					-0.04644999049355647
QDERRALL	8	Unmodified	_QDERRALL_					0	0	0		ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.26708984375	2	500.780348	999.546142	-1.6198	-0.00081115	-3.0897	-0.0015472	-4.7094	-0.0023584	500.7787654596226	72.375	1.0711	68.979	68.472	69.543	-3.3961					34	21	2	0	0	0	0.028476	1	5597	5597		57.811	0	1	145420			44922	2227	37166	37189	48376	48376					0.046350905319854974
QDETSLATH	9	Unmodified	_QDETSLATH_					0	0	0		ENSG00000074657|ENST00000591808|ZNF532	ENSG00000074657|ENST00000591808|ZNF532	ENSG00000074657|ENST00000591808|ZNF532	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.8067321777344	2	501.230353	1000.44615	-0.60323	-0.00030236	-0.64043	-0.000321	-1.2437	-0.00062336	501.2304210314242	58.369	0.59822	54.977	54.701	55.3	-3.392					20	11	3	0	0	0	0.027462	1	3820	3820		39.253	17.293	1	31261			44923	1514	37167	37190	48377	48377					-0.054051915924674176
QDEVEAMFAE	10	Unmodified	_QDEVEAMFAE_					0	0	0			REV__ENSG00000198231|ENST00000389924|DDX42	REV__ENSG00000198231|ENST00000389924|DDX42	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.8231201171875	2	584.744979	1167.4754	2.574	0.0015052	-4.0192	-0.0023502	-1.4451	-0.00084504	584.7411664309129	115.96	0.78682	115.96	115.54	116.32	0					28	16	3	0	0	0	0.026679	1	13300	13300		44.377	0	1	279950	+		44924	23004	37168	37191	48378	48378					-0.10163415358510974
QDEWHLLHLRR	11	Unmodified	_QDEWHLLHLRR_					0	0	0		ENSG00000152154|ENST00000281961|TMEM178A	ENSG00000152154|ENST00000281961|TMEM178A	ENSG00000152154|ENST00000281961|TMEM178A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.2853698730469	3	501.604019	1501.79023	-1.2466	-0.00062531	-0.36583	-0.0001835	-1.6124	-0.00080881	501.60372636023544	81.875	1.1127	79.192	78.963	80.076	-2.683					41	22	3	0	0	0	0.026383	1	6751	6751		17.833	0.6664	1	188310			44925	5607	37169	37192	48379	48379					0.05940549625915992
QDFHHHEMIS	10	Unmodified	_QDFHHHEMIS_					0	0	0			REV__ENSG00000138735|ENST00000354960|PDE5A	REV__ENSG00000138735|ENST00000354960|PDE5A	MULTI-MSMS	OvCa99_classI_Rep5	1	640.7799072265625	2	640.777479	1279.5404	2.2178	0.0014211	0.54304	0.00034797	2.7608	0.0017691	640.7776869805671	82.026	0.74596	82.026	81.776	82.522	0					43	17	3	0	0	0	0.62299	1	8466	8466		39.253	1.4413	1	2197000	+		44926	19564	37170	37193	48380	48380					-0.08818376041972442
QDFHHHEMIS	10	Unmodified	_QDFHHHEMIS_					0	0	0			REV__ENSG00000138735|ENST00000354960|PDE5A	REV__ENSG00000138735|ENST00000354960|PDE5A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	640.777479	1279.5404	-1.0333	-0.00066211	0.79465	0.0005092	-0.23863	-0.00015291	640.7779735156118	83.247	0.75571	81.648	81.415	82.171	-1.5988	-0.18905	0.00019759	NaN	39.253	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49057	+		44927	19564	37170	37193							-0.08818376041972442
QDFLLHSSL	9	Unmodified	_QDFLLHSSL_					0	0	0		ENSG00000125386|ENST00000637812|FAM193A;FAM193A|p.P278Sfs*16|1|0.06|ENSG00000125386|chr4:2660013-2660014|-/T|frameshift_variant;FAM193A|p.T577Cfs*75|1|0.32|ENSG00000125386|chr4:2690768-2690769|-/TGTGCAGGCTGTTGCACTGCGCC|frameshift_variant	ENSG00000125386|ENST00000637812|FAM193A	ENSG00000125386|ENST00000637812|FAM193A	MULTI-MSMS	OvCa99_classI_Rep5	1	530.27685546875	2	530.277106	1058.53966	-0.49372	-0.00026181	-3.8134	-0.0020222	-4.3071	-0.002284	530.2751024385426	61.348	1.3512	61.348	60.943	62.294	0					88	31	5	0	0	0	0.14998	1	5377	5377		84.916	2.675	1	16265000			44928	3705	37171	37194	48381	48381					0.01273152580643
QDFNLQYVL	9	Unmodified	_QDFNLQYVL_					0	0	0			REV__ENSG00000168282|ENST00000305386|MGAT2	REV__ENSG00000168282|ENST00000305386|MGAT2	MULTI-SECPEP	OvCa9_classI_Rep3	3	570.313720703125	2	570.290214	1138.56587	0.4145	0.00023639	-0.44936	-0.00025627	-0.034859	-1.988E-05	570.2898750484246	119.63	1.3294	118.6	118.23	119.56	-1.0271					68	26	4	0	0	0	0.027455	1	9082	9082		34.173	0	1	215650	+		44929	21359	37172	37195	48382	48382					0.0021342175209611014
QDFPIGASSL	10	Unmodified	_QDFPIGASSL_					0	0	0			REV__tr|A0A553SFV7|A0A553SFV7_NIACINCS2familypermeaseOS=NialliacirculansOX=1397GN=CEQ21_09615PE=3SV=1	REV__tr|A0A553SFV7|A0A553SFV7_NIACINCS2familypermeaseOS=NialliacirculansOX=1397GN=CEQ21_09615PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.804443359375	2	517.761289	1033.50803	-0.59289	-0.00030697	-3.7022	-0.0019168	-4.2951	-0.0022238	517.7590001041461	69.026	0.83043	65.536	65.362	66.192	-3.4902					31	16	3	0	0	0	0.026646	1	5181	5181		45.022	18.329	1	84520	+		44930	29628	37173	37196	48383	48383					-0.007388401733123828
QDGFFIVARA	10	Unmodified	_QDGFFIVARA_					0	0	0			REV__ENSG00000002726|ENST00000360937|AOC1	REV__ENSG00000002726|ENST00000360937|AOC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.289306640625	2	562.298373	1122.58219	2.8034	0.0015764	1.6007	0.00090006	4.4041	0.0024764	562.2989108122416	84.374	0.748	84.374	83.841	84.589	0					21	17	2	0	0	0	0.026802	1	8797	8797		26.693	0	1	197780	+		44931	16365	37174	37197	48384	48384					0.02580547708839731
QDGFGVTSVIT	11	Unmodified	_QDGFGVTSVIT_					0	0	0			REV__nc|ENSG00000125354|Q14141-3|SEPTIN6	REV__nc|ENSG00000125354|Q14141-3|SEPTIN6	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.3078002929688	2	562.285128	1122.5557	2.1061	0.0011842	-1.0185	-0.00057266	1.0877	0.00061157	562.2846025397639	112.31	0.45789	112.31	112.06	112.52	0					11	9	2	0	0	0	0.025656	1	12806	12806		20.03	0	1	49346	+		44932	18719	37175	37198	48385	48385					-0.0006718597314829822
QDGIRFYWLWH	11	Unmodified	_QDGIRFYWLWH_					0	0	0			REV__chr1:117147782-117170107|117|27.29|0.23|6.89|-|1|VTCN1,VTCN1|1	REV__chr1:117147782-117170107|117|27.29|0.23|6.89|-|1|VTCN1,VTCN1|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.8137512207031	3	507.585966	1519.73607	-0.21629	-0.00010979	3.8608	0.0019597	3.6445	0.0018499	507.5881865968678	95.998	0.44826	94.97	94.714	95.162	-1.0281					14	8	2	0	0	0	0.026383	1	8663	8663		1.1482	0	1	11306	+		44933	15795	37176	37199	48386	48386					-0.003010425256434246
QDHEPGEV	8	Unmodified	_QDHEPGEV_					0	0	0		ENST00000397264.4_1_10:5977361-5977517:-|nuORF	ENST00000397264.4_1_10:5977361-5977517:-|nuORF	ENST00000397264.4_1_10:5977361-5977517:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	455.7003173828125	2	455.698689	909.382825	-0.55973	-0.00025507	2.1623	0.00098538	1.6026	0.00073031	455.6992539776933	66.165	1.4306	66.165	65.467	66.898	0					79	35	4	0	0	0	0.70469	1	6151	6151		42.396	3.59	1	1607100			44934	11341	37177	37200	48387	48387					-0.075491323097026
QDHIIIEQV	9	Unmodified	_QDHIIIEQV_					0	0	0			REV__nc|ENSG00000088926|P03951-2|F11	REV__nc|ENSG00000088926|P03951-2|F11	MULTI-MSMS	OvCa9_classI_Rep2	2	547.7967529296875	2	547.795663	1093.57677	0.050847	2.7854E-05	-0.6998	-0.00038335	-0.64895	-0.00035549	547.7953012844869	106.44	1.5786	106.13	105.78	107.36	-0.30836					100	31	6	0	0	0	0.22035	1	9912	9912		72.879	4.0331	1	280320	+		44935	17189	37178	37201	48388	48388					0.03372824126381602
QDHLAKLET	9	Unmodified	_QDHLAKLET_					0	0	0			REV__ENST00000585968.5_1_19:36103696-36110661:+|nuORF	REV__ENST00000585968.5_1_19:36103696-36110661:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3176879882812	2	527.780013	1053.54547	0.64847	0.00034225	-2.9628	-0.0015637	-2.3143	-0.0012215	527.7793602184887	67.086	0.23575	67.086	66.977	67.212	0					7	5	2	0	0	0	0.027448	1	6275	6275		35.618	16.515	1	153420	+		44936	23487	37179	37202	48389	48389					0.02084251092287559
QDHQAPDF	8	Unmodified	_QDHQAPDF_					0	0	0			REV__ENSG00000129347|ENST00000312962|KRI1;REV__ENST00000478863.5_1_19:10666000-10676642:-|nuORF	REV__ENST00000478863.5_1_19:10666000-10676642:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.76904296875	2	479.206681	956.398809	0.173	8.2902E-05	-0.3805	-0.00018234	-0.2075	-9.9436E-05	479.20672429846275	32.868	0.24138	32.868	32.748	32.989	0					7	4	2	0	0	0	0.028476	1	1457	1457		25.45	0	1	15750	+		44937	18894;26426	37180	37203	48390	48390					-0.0811342607281631
QDICKSAGRVK	11	Unmodified	_QDICKSAGRVK_					0	0	0		ENSG00000197279|ENST00000683778|ZNF165	ENSG00000197279|ENST00000683778|ZNF165	ENSG00000197279|ENST00000683778|ZNF165	MULTI-SECPEP	OvCa9_classI_Rep4_	4	402.88702392578125	3	402.220407	1203.63939	0.94282	0.00037922	-1.3382	-0.00053827	-0.39543	-0.00015905	402.220631709485	42.965	0.47192	39.957	39.748	40.22	-3.0074					12	8	2	0	0	0	0.025722	1	2009	2009		11.932	5.6115	1	7719.1			44938	8696	37181	37204	48391	48391					0.04571646922909167
QDIKTKKR	8	Unmodified	_QDIKTKKR_					0	0	0		ENST00000430603.1_1_10:30728116-30739489:+|nuORF;nc|ENSG00000107968|P41279-2|MAP3K8;ENSG00000107968|ENST00000263056|MAP3K8	ENST00000430603.1_1_10:30728116-30739489:+|nuORF	ENST00000430603.1_1_10:30728116-30739489:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	508.8155822753906	2	508.81419	1015.61383	-0.78833	-0.00040111	2.7045	0.0013761	1.9162	0.00097497	508.81565400574175	75.018	5.5984	72.607	72.192	77.79	-2.4106					316	110	5	0	0	0	0.45246	1	3755	3755		82.305	4.9875	1	9586100			44939	2633	37182	37205	48392	48392					0.10664540462801142
QDILLIVNK	9	Unmodified	_QDILLIVNK_					0	0	0			REV__ENSG00000135976|ENST00000420699|ANKRD36	REV__ENSG00000135976|ENST00000420699|ANKRD36	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.3271484375	2	528.326599	1054.63865	0.83538	0.00044135	2.7832	0.0014704	3.6186	0.0019118	528.3278477712166	129.01	4.1824	127.56	127.15	131.33	-1.4565					215	84	4	0	0	0	0.60342	1	12546	12546		31.53	2.3803	1	383740	+		44940	19345	37183	37206	48393	48393					0.11351175545519254
QDIPTLPHAA	10	Unmodified	_QDIPTLPHAA_					0	0	0		ENST00000322764.9_1_7:143087806-143088163:+|nuORF	ENST00000322764.9_1_7:143087806-143088163:+|nuORF	ENST00000322764.9_1_7:143087806-143088163:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	531.7818603515625	2	531.782556	1061.55056	-1.5399	-0.00081889	1.1515	0.00061235	-0.38839	-0.00020654	531.7830281716216	47.648	1.6888	44.939	44.39	46.079	-2.7097					102	33	5	0	0	0	0.45822	1	2932	2932		60.118	0	1	612800			44941	10385	37184	37207	48394	48394					0.022245549548870258
QDIRWKNKF	9	Unmodified	_QDIRWKNKF_					0	0	0		nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000079156|Q9BZF3-5|OSBPL6;nc|ENSG00000079156|Q9BZF3-2|OSBPL6;nc|ENSG00000079156|Q9BZF3-4|OSBPL6;ENSG00000079156|ENST00000190611|OSBPL6	nc|ENSG00000079156|Q9BZF3-3|OSBPL6	nc|ENSG00000079156|Q9BZF3-3|OSBPL6	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.9132080078125	3	412.22789	1233.66184	-0.5527	-0.00022784	-1.25	-0.00051528	-1.8027	-0.00074312	412.2257434777914	64.048	0.23679	64.048	63.854	64.091	0					8	5	2	0	0	0	0.027462	1	5789	5789		35.152	6.5753	1	113510			44942	14896	37185	37208	48395	48395					0.05435614382827225
QDIRWKNKF	9	Unmodified	_QDIRWKNKF_					0	0	0		nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000079156|Q9BZF3-5|OSBPL6;nc|ENSG00000079156|Q9BZF3-2|OSBPL6;nc|ENSG00000079156|Q9BZF3-4|OSBPL6;ENSG00000079156|ENST00000190611|OSBPL6	nc|ENSG00000079156|Q9BZF3-3|OSBPL6	nc|ENSG00000079156|Q9BZF3-3|OSBPL6	MULTI-MATCH	OvCa9_classI_Rep2	2		3	412.22789	1233.66184	0.70151	0.00028918	-2.535	-0.001045	-1.8335	-0.00075581	412.2264115866568	67.001	0.84281	64.34	63.95	64.793	-2.661	0.14584	-0.00037679	NaN	82.75	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29799			44943	14896	37185	37208							0.05435614382827225
QDIVVHYTF	9	Unmodified	_QDIVVHYTF_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-SECPEP	OvCa9_classI_Rep3	3	560.7980346679688	2	561.284931	1120.55531	-1.0889	-0.00061119	3.6557	0.0020519	2.5668	0.0014407	561.2866156788277	101.94	0.52491	100.42	100.16	100.69	-1.5211					14	9	3	0	0	0	0.027433	1	6989	6989		60.972	4.2509	1	60203			44944	6376	37186	37209	48396	48396					-0.00014560902354787686
QDKETSDAFHS	11	Unmodified	_QDKETSDAFHS_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	OvCa99_classI_Rep5	1	632.3002319335938	2	632.775656	1263.53676	0.26096	0.00016513	-2.6575	-0.0016816	-2.3965	-0.0015165	632.774332594529	51.349	0.58786	51.349	51.12	51.708	0					34	13	5	0	0	0	0.02568	1	4003	4003		51.528	0	1	622800			44945	7566	37187	37210	48397	48397					-0.08446767334839933
QDKFIWLLE	9	Unmodified	_QDKFIWLLE_					0	0	0			REV__tr|A0A7D6VU59|A0A7D6VU59_9CLOTThymidylatesynthaseOS=ClostridiumintestinaleOX=36845GN=thyAPE=3SV=1	REV__tr|A0A7D6VU59|A0A7D6VU59_9CLOTThymidylatesynthaseOS=ClostridiumintestinaleOX=36845GN=thyAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.7950439453125	2	596.324057	1190.63356	-2.6623	-0.0015876	-2.6983	-0.001609	-5.3605	-0.0031966	596.3223351951262	104.09	0.42745	104.09	103.94	104.36	0					15	9	2	0	0	0	0.027462	1	11664	11664		25.574	1.0549	1	241540	+		44946	31653	37188	37211	48398	48398					0.04586871682909077
QDKKIEKSVK	10	Unmodified	_QDKKIEKSVK_					0	0	0			REV__nc|ENSG00000187790|Q8IYD8-3|FANCM	REV__nc|ENSG00000187790|Q8IYD8-3|FANCM	MULTI-SECPEP	OvCa9_classI_Rep2	2	601.2774658203125	2	601.858795	1201.70304	-0.031571	-1.9001E-05	-0.73354	-0.00044149	-0.76511	-0.00046049	601.8585902423031	64.945	0.72417	62.221	61.917	62.641	-2.7246					24	13	2	0	0	0	0.027028	1	4954	4954		31.53	0	1	19352	+		44947	22665	37189	37212	48399	48399					0.11025330631628094
QDKPESLQPR	10	Unmodified	_QDKPESLQPR_					0	0	0		ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B;nc|ENSG00000204084|P32019-3|INPP5B;nc|ENSG00000204084|P32019-4|INPP5B;INPP5B-TRIT1|1|fusion	ENSG00000204084|ENST00000373024|INPP5B	ENSG00000204084|ENST00000373024|INPP5B	MULTI-MSMS	OvCa9_classI_Rep2	2	599.3121948242188	2	599.314751	1196.61495	-1.4774	-0.0008854	-3.3844	-0.0020283	-4.8617	-0.0029137	599.3125920502436	68.519	1.8365	65.899	65.229	67.066	-2.6203					106	36	5	0	0	0	0.49558	1	5409	5409		54.776	5.2403	1	554290			44948	8946	37190	37213	48400	48400					0.02450710041034654
QDLAPSQISL	10	Unmodified	_QDLAPSQISL_					0	0	0			REV__tr|A0A553SHS0|A0A553SHS0_NIACINitroreductasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13410PE=4SV=1	REV__tr|A0A553SHS0|A0A553SHS0_NIACINitroreductasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13410PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.3067016601562	2	536.287671	1070.56079	0.037528	2.0126E-05	4.3535	0.0023347	4.3911	0.0023549	536.2901321025907	101.4	0.47346	99.797	99.603	100.08	-1.6053					15	8	2	0	0	0	0.026656	1	6956	6956		65.465	0	1	17870	+		44949	29830	37191	37214	48401	48401					0.028331178894859477
QDLAPSQISL	10	Unmodified	_QDLAPSQISL_					0	0	0			REV__tr|A0A553SHS0|A0A553SHS0_NIACINitroreductasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13410PE=4SV=1	REV__tr|A0A553SHS0|A0A553SHS0_NIACINitroreductasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13410PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	536.287671	1070.56079	-1.069	-0.0005733	5.5122	0.0029561	4.4431	0.0023828	536.2904173911795	102.04	0.52433	99.841	99.624	100.15	-2.1994	0.0039387	0.0029974	NaN	65.465	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29206	+		44950	29830	37191	37214							0.028331178894859477
QDLAVRAES	9	Unmodified	_QDLAVRAES_					0	0	0			REV__ENST00000372797.7_2_1:40537598-40537793:+|nuORF	REV__ENST00000372797.7_2_1:40537598-40537793:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.7742919921875	2	494.756538	987.498523	-0.61185	-0.00030272	1.5768	0.00078014	0.96497	0.00047742	494.757177701083	53.027	0.80149	49.819	49.602	50.404	-3.208					35	15	3	0	0	0	0.027462	1	3194	3194		35.618	0	1	186530	+		44951	25016	37192	37215	48402	48402					0.004273915411431517
QDLCLCQTI	9	Unmodified	_QDLCLCQTI_					0	0	0			REV__ENST00000514947.1_1_5:126506299-126506926:-|nuORF	REV__ENST00000514947.1_1_5:126506299-126506926:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.7938232421875	2	518.743728	1035.4729	0.35182	0.00018251	-4.3572	-0.0022603	-4.0054	-0.0020778	518.7414760238283	103.31	0.41434	103.31	103.14	103.55	0					16	9	2	0	0	0	0.027461	1	11543	11543		40.778	0	1	511870	+		44952	26991	37193	37216	48403	48403					-0.043415422971520456
QDLEAKLT	8	Unmodified	_QDLEAKLT_					0	0	0		CON__A2I7N1;CON__A2I7N0;CON__REFSEQ:XP_001252647;CON__A2I7N3	CON__A2I7N1;CON__A2I7N3	CON__A2I7N3	MULTI-SECPEP	OvCa99_classI_Rep5	1	459.271240234375	2	459.250557	916.486562	2.516	0.0011555	1.959	0.00089968	4.475	0.0020552	459.2504389335777	75.95	0.68475	75.95	75.68	76.365	0					19	16	2	0	0	0	0.028476	1	7549	7549		33.516	8.0654	1	202000		+	44953	598;599	37194	37217	48404	48404					0.024977747979505693
QDLEKKQR	8	Unmodified	_QDLEKKQR_					0	0	0			REV__ENSG00000120051|ENST00000369704|CFAP58	REV__ENSG00000120051|ENST00000369704|CFAP58	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.3163452148438	2	522.793455	1043.57236	-1.3659	-0.00071407	1.5462	0.00080832	0.1803	9.4258E-05	522.7942330041864	34.209	0.42616	34.209	34.065	34.491	0					11	8	2	0	0	0	0.028476	1	1664	1664		23.042	0	1	32189	+		44954	18482	37195	37218	48405	48405					0.05231359703475391
QDLEKKQR	8	Unmodified	_QDLEKKQR_					0	0	0			REV__ENSG00000120051|ENST00000369704|CFAP58	REV__ENSG00000120051|ENST00000369704|CFAP58	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	522.793455	1043.57236	0.51174	0.00026753	-1.5895	-0.000831	-1.0778	-0.00056347	522.792722082993	37.277	0.39957	34.385	34.192	34.591	-2.8925	0.087742	-0.001427	NaN	10.866	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15308	+		44955	18482	37195	37218							0.05231359703475391
QDLEPMLKI	9	Unmodified	_QDLEPMLKI_					0	0	0		tr|A0A553SRD6|A0A553SRD6_NIACIExtracellularsolute-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_00730PE=4SV=1	tr|A0A553SRD6|A0A553SRD6_NIACIExtracellularsolute-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_00730PE=4SV=1	tr|A0A553SRD6|A0A553SRD6_NIACIExtracellularsolute-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_00730PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.7955322265625	2	543.796817	1085.57908	-2.58	-0.001403	-1.4903	-0.00081042	-4.0703	-0.0022134	543.795957768216	108.22	2.6138	106.49	106.17	108.79	-1.7256					109	50	5	0	0	0	0.0086488	2	9908	9908;9958		176.09	5.3733	1	2628600			44956	34252	37196	37219	48406;48407	48406					0.03971536539825138
QDLFPNIEL	9	Unmodified	_QDLFPNIEL_					0	0	0		ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.K2074Efs*10|1|0.06|ENSG00000183914|chr17:7786212-7786213|-/TGAGG|frameshift_variant;ENST00000574518.1_1_17:7674005-7689702:+|nuORF	ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MULTI-MSMS	OvCa99_classI_Rep5	1	544.7930908203125	2	544.784764	1087.55498	1.9996	0.0010893	-3.4625	-0.0018863	-1.4629	-0.00079699	544.7827472024059	85.676	0.5714	85.676	85.422	85.994	0					28	13	3	0	0	0	0.20111	1	9008	9008		76.17	5.3535	1	1059400			44957	8123	37197	37220	48408	48408					0.014700193778026005
QDLHCPPQTP	10	Unmodified	_QDLHCPPQTP_					0	0	0		ENST00000535984.1_1_11:113285130-113295217:-|nuORF	ENST00000535984.1_1_11:113285130-113295217:-|nuORF	ENST00000535984.1_1_11:113285130-113295217:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.2421264648438	2	568.263673	1134.51279	0.073088	4.1533E-05	3.2295	0.0018352	3.3026	0.0018768	568.2654961544291	61.038	0.25549	61.038	60.816	61.071	0					6	5	2	0	0	0	0.026994	1	5344	5344		32.812	4.9302	1	124420			44958	13385	37198	37221	48409	48409					-0.04908279302230767
QDLHVHKF	8	Unmodified	_QDLHVHKF_					0	0	0		ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	MULTI-SECPEP	OvCa9_classI_Rep2	2	512.8131713867188	2	512.272158	1022.52976	0.42573	0.00021809	-0.75207	-0.00038526	-0.32633	-0.00016717	512.2714000508786	81.322	0.96918	79.673	79.365	80.334	-1.6485					34	18	2	0	0	0	0.028476	1	6972	6972		11.511	0	1	47480			44959	5345	37199	37222	48410	48410					0.01940009365887363
QDLIRSIQI	9	Unmodified	_QDLIRSIQI_					0	0	0			REV__nc|ENSG00000213999|Q02080|MEF2B	REV__nc|ENSG00000213999|Q02080|MEF2B	MULTI-SECPEP	OvCa9_classI_Rep3	3	543.7951049804688	2	543.319306	1084.62406	0.29868	0.00016228	-1.436	-0.00078021	-1.1373	-0.00061793	543.318880425478	107.86	1.1441	106.66	106.27	107.41	-1.1978					74	21	5	0	0	0	0.027353	1	7706	7706		82.241	7.9855	1	147030	+		44960	23280	37200	37223	48411	48411					0.08513103397376653
QDLIYFVR	8	Unmodified	_QDLIYFVR_					0	0	0		ENSG00000154305|ENST00000344922|MIA3;ENST00000470521.1_1_1:222791452-222819114:+|nuORF;nc|ENSG00000154305|Q5JRA6-2|MIA3	ENSG00000154305|ENST00000344922|MIA3	ENSG00000154305|ENST00000344922|MIA3	MULTI-SECPEP	OvCa9_classI_Rep2	2	527.8160400390625	2	527.290017	1052.56548	-0.84462	-0.00044536	-0.86322	-0.00045517	-1.7078	-0.00090053	527.2892249037809	104.67	0.44384	104.1	103.92	104.36	-0.57639					16	8	3	0	0	0	0.028476	1	9727	9727		12.207	0	1	59710			44961	5727	37201	37224	48412	48412					0.04130046822888289
QDLKLLAN	8	Unmodified	_QDLKLLAN_					0	0	0		nc|ENSG00000143493|Q9NVH2-4|INTS7;nc|ENSG00000143493|Q9NVH2-3|INTS7;nc|ENSG00000143493|Q9NVH2-2|INTS7;ENSG00000143493|ENST00000366994|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	MULTI-SECPEP	OvCa9_classI_Rep2	2	456.7793884277344	2	457.768917	913.523281	1.0173	0.00046568	-0.80269	-0.00036745	0.21458	9.8228E-05	457.7682812690094	79.125	1.5728	77.386	76.951	78.524	-1.7398					57	30	3	0	0	0	0.028476	1	6699	6699		35.618	0	1	99945			44962	5062	37202	37225	48413	48413					0.06306071414508096
QDLKLLAN	8	Unmodified	_QDLKLLAN_					0	0	0		nc|ENSG00000143493|Q9NVH2-4|INTS7;nc|ENSG00000143493|Q9NVH2-3|INTS7;nc|ENSG00000143493|Q9NVH2-2|INTS7;ENSG00000143493|ENST00000366994|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	nc|ENSG00000143493|Q9NVH2-4|INTS7	MULTI-SECPEP	OvCa9_classI_Rep3	3	456.780029296875	2	457.768917	913.523281	0.24126	0.00011044	-0.1362	-6.2347E-05	0.10506	4.8093E-05	457.76861769840417	79.505	1.2115	77.166	76.852	78.063	-2.3399					47	23	3	0	0	0	0.028476	1	4367	4367		20.947	0	1	260400			44963	5062	37202	37225	48414	48414					0.06306071414508096
QDLKRCKL	8	Unmodified	_QDLKRCKL_					0	0	0		ENSG00000167393|ENST00000390665|PPP2R3B;ENST00000477110.6_1_X:299337-302121:-|nuORF;nc|ENSG00000292327|Q9Y5P8-2|PPP2R3B;ENST00000468169.6_1_X:299440-306311:-|nuORF	ENSG00000167393|ENST00000390665|PPP2R3B	ENSG00000167393|ENST00000390665|PPP2R3B	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.2584533691406	2	502.289494	1002.56443	-0.60869	-0.00030574	-1.0059	-0.00050525	-1.6146	-0.00081099	502.28868686824273	53.319	0.60388	53.319	52.915	53.519	0					27	13	3	0	0	0	0.028476	1	4244	4244		93.195	5.4412	1	302910			44964	6786	37203	37226	48415	48415					0.06325509182340738
QDLLAWFM	8	Unmodified	_QDLLAWFM_					0	0	0			REV__nc|ENSG00000163406|Q16348-2|SLC15A2	REV__nc|ENSG00000163406|Q16348-2|SLC15A2	MULTI-MSMS	OvCa9_classI_Rep3	3	512.2543334960938	2	512.252046	1022.48954	-0.86995	-0.00044563	3.8642	0.0019795	2.9943	0.0015338	512.2539630058868	86.701	3.116	84.524	83.979	87.095	-2.1768					189	61	5	0	0	0	0.68714	1	5222	5222		45.952	3.5558	1	2198600	+		44965	20834	37204	37227	48416	48416					-0.020806733488939244
QDLPKRKL	8	Unmodified	_QDLPKRKL_					0	0	0			REV__ENSG00000009765|ENST00000344419|IYD	REV__ENSG00000009765|ENST00000344419|IYD	MULTI-MSMS	OvCa99_classI_Rep5	1	499.3110656738281	2	499.311284	996.608014	-0.66423	-0.00033166	0.99892	0.00049877	0.33469	0.00016711	499.31167544409743	38.003	0.77225	38.003	37.668	38.44	0					29	16	3	0	0	0	0.50747	1	2131	2131		76.774	15.802	1	878790	+		44966	16468	37205	37228	48417	48417					0.10957441951120472
QDLPSYLF	8	Unmodified	_QDLPSYLF_					0	0	0		ENSG00000162409|ENST00000371244|PRKAA2	ENSG00000162409|ENST00000371244|PRKAA2	ENSG00000162409|ENST00000371244|PRKAA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.8132019042969	2	491.74765	981.480748	-0.76797	-0.00037765	-3.3255	-0.0016353	-4.0935	-0.002013	491.74574139084194	67.969	0.63337	67.969	67.723	68.356	0					26	15	3	0	0	0	0.028476	1	6404	6404		29.15	1.2673	1	1069700			44967	6179	37206	37229	48418	48418					-0.010733237137287688
QDLQRSFSK	9	Unmodified	_QDLQRSFSK_					0	0	0			REV__ENSG00000136021|ENST00000360820|SCYL2;REV__ENST00000392253.2_1_2:202276919-202277543:-|nuORF	REV__ENSG00000136021|ENST00000360820|SCYL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.3233032226562	2	554.790912	1107.56727	-0.53482	-0.00029671	0.56483	0.00031336	0.030014	1.6651E-05	555.293931778905	51.105	0.30161	47.931	47.671	47.972	-3.1734					6	5	2	0	0	0	0.027455	1	2971	2971		51.335	0	1	10930	+		44968	19351;25250	37207	37230	48419	48419					0.01779055840847832
QDLSFHEL	8	Unmodified	_QDLSFHEL_					0	0	0			REV__tr|A0A553STN1|A0A553STN1_NIACIThiolreductantABCexportersubunitCydCOS=NialliacirculansOX=1397GN=cydCPE=4SV=1	REV__tr|A0A553STN1|A0A553STN1_NIACIThiolreductantABCexportersubunitCydCOS=NialliacirculansOX=1397GN=cydCPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.7879333496094	2	494.740357	987.46616	-0.85479	-0.0004229	0.76478	0.00037837	-0.090009	-4.4531E-05	494.74056211974766	54.256	1.3841	51.009	50.722	52.106	-3.2474					56	26	3	0	0	0	0.028476	1	3371	3371		51.335	26.816	1	252250	+		44969	30987	37208	37231	48420	48420					-0.028073958618506367
QDLSIIQSI	9	Unmodified	_QDLSIIQSI_					0	0	0		nc|ENSG00000257923|P39880-9|CUX1;ENST00000558836.5_1_7:101575863-101926379:+|nuORF;nc|ENSG00000257923|Q13948-9|CUX1;nc|ENSG00000257923|Q13948-10|CUX1;nc|ENSG00000257923|Q13948-2|CUX1;nc|ENSG00000257923|Q13948|CUX1;ENST00000560541.5_1_7:101556607-101926379:+|nuORF	nc|ENSG00000257923|P39880-9|CUX1	nc|ENSG00000257923|P39880-9|CUX1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.8155212402344	2	508.784764	1015.55498	-0.50794	-0.00025843	0.81371	0.000414	0.30578	0.00015557	508.7851032990046	76.486	1.3817	73.547	73.08	74.462	-2.9389					76	28	4	0	0	0	0.027403	1	6110	6110		66.962	0	1	738850			44970	13706	37209	37232	48421	48421					0.04782019377819324
QDLSWLRVE	9	Unmodified	_QDLSWLRVE_					0	0	0		ENSG00000178171|ENST00000321420|AMER3	ENSG00000178171|ENST00000321420|AMER3	ENSG00000178171|ENST00000321420|AMER3	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.3394775390625	2	573.301113	1144.58767	-0.40346	-0.0002313	0.92788	0.00053195	0.52442	0.00030065	573.8049702820022	71.353	0.23615	71.353	71.191	71.427	0					9	5	2	0	0	0	0.027453	1	6877	6877		23.523	0	1	167180			44971	7736	37210	37233	48422	48422					0.02116226500652374
QDLVSELMFA	10	Oxidation (M)	_QDLVSELM(Oxidation (M))FA_		QDLVSELM(1)FA		QDLVSELM(82)FA	0	0	1			REV__ENSG00000159363|ENST00000326735|ATP13A2	REV__ENSG00000159363|ENST00000326735|ATP13A2	MULTI-MSMS	OvCa9_classI_Rep2	2	584.78125	2	584.781364	1167.54818	-1.6582	-0.0009697	1.2057	0.00070506	-0.45254	-0.00026464	584.7819856230432	85.183	2.3723	83.653	82.915	85.288	-1.5297					136	46	4	0	0	0	0.28845	1	7363	7363		82.241	11.424	1	586800	+		44972	20612	37211	37234	48423	48423		480			-0.028896615650637614
QDMMRTVSIL	10	Unmodified	_QDMMRTVSIL_					0	0	0		ENST00000542958.5_1_12:64816967-64819028:+|nuORF	ENST00000542958.5_1_12:64816967-64819028:+|nuORF	ENST00000542958.5_1_12:64816967-64819028:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	597.3212280273438	2	597.304484	1192.59441	1.9831	0.0011845	-1.5239	-0.00091024	0.45918	0.00027427	597.3039245691757	134.59	0.22186	134.59	134.52	134.74	0					6	4	2	0	0	0	0.027118	1	15662	15662		13.454	0	1	75726			44973	13484	37212	37235	48424	48424					0.005820800653737024
QDMNYQAF	8	Unmodified	_QDMNYQAF_					0	0	0			REV__ENSG00000116489|ENST00000263168|CAPZA1	REV__ENSG00000116489|ENST00000263168|CAPZA1	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.81500244140625	2	508.710742	1015.40693	-0.72862	-0.00037065	-2.584	-0.0013145	-3.3127	-0.0016852	508.709869292462	74.903	0.41118	72.932	72.639	73.05	-1.9711					11	7	2	0	0	0	0.028476	1	6123	6123		85.359	5.6469	1	12176	+		44974	18302	37213	37236	48425	48425					-0.10015615147699464
QDMQSVVAEY	10	Unmodified	_QDMQSVVAEY_					0	0	0			REV__nc|ENSG00000135063|Q15884-1|ENTREP1	REV__nc|ENSG00000135063|Q15884-1|ENTREP1	MULTI-MSMS	OvCa99_classI_Rep5	1	585.2642211914062	2	585.260796	1168.50704	1.7381	0.0010173	4.0032	0.0023429	5.7414	0.0033602	585.2630590807725	137.76	1.1467	137.76	137.4	138.55	0					47	24	3	0	0	0	0.71173	1	16059	16059		29.17	0.020503	1	269630	+		44975	19253	37214	37237	48426	48426					-0.0704742260452349
QDNAGRQEQ	9	Unmodified	_QDNAGRQEQ_					0	0	0			REV__ENSG00000164822|ENST00000297436|DEFA6	REV__ENSG00000164822|ENST00000297436|DEFA6	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.3251953125	2	523.236501	1044.45845	1.6759	0.00087688	1.5794	0.00082642	3.2553	0.0017033	523.2372315883738	117.95	0.60004	117.95	117.65	118.25	0					27	12	3	0	0	0	0.027452	1	13490	13490		58.23	15.834	1	351820	+		44976	21023	37215	37238	48427	48427					-0.06200155129454288
QDNPKLLKK	9	Unmodified	_QDNPKLLKK_					0	0	0		tr|A0A553SSX1|A0A553SSX1_NIACIAminoacidABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_03765PE=3SV=1	tr|A0A553SSX1|A0A553SSX1_NIACIAminoacidABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_03765PE=3SV=1	tr|A0A553SSX1|A0A553SSX1_NIACIAminoacidABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_03765PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.7733154296875	2	542.329673	1082.64479	-1.6054	-0.00087065	-2.0363	-0.0011044	-3.6417	-0.001975	542.328598169121	42.232	0.71341	39.252	39.167	39.88	-2.9804					20	13	2	0	0	0	0.027462	1	1997	1997		32.812	17.171	1	29387			44977	34430	37216	37239	48428	48428					0.10677693777029162
QDNSLVHLD	9	Unmodified	_QDNSLVHLD_					0	0	0			REV__ENSG00000149548|ENST00000344762|CCDC15	REV__ENSG00000149548|ENST00000344762|CCDC15	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.7779541015625	2	520.753995	1039.49344	-0.22056	-0.00011486	-2.7883	-0.001452	-3.0089	-0.0015669	520.7522740040548	78.551	0.99792	76.199	75.647	76.645	-2.3527					40	19	4	0	0	0	0.027462	1	4195	4195		24.519	8.046	1	32552	+		44978	20170	37217	37240	48429	48429					-0.024729123214683568
QDNSLVHLD	9	Unmodified	_QDNSLVHLD_					0	0	0			REV__ENSG00000149548|ENST00000344762|CCDC15	REV__ENSG00000149548|ENST00000344762|CCDC15	MULTI-MATCH	OvCa99_classI_Rep5	1		2	520.753995	1039.49344	1.5502	0.00080729	-8.016	-0.0041744	-6.4658	-0.0033671	521.2501650858254	76.499	0.35867	76.499	76.28	76.639	0	0.11404	-0.0052986	NaN	12.812	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148480	+		44979	20170	37217	37240							-0.024729123214683568
QDNSLVHLD	9	Unmodified	_QDNSLVHLD_					0	0	0			REV__ENSG00000149548|ENST00000344762|CCDC15	REV__ENSG00000149548|ENST00000344762|CCDC15	MULTI-MATCH	OvCa9_classI_Rep2	2		2	520.753995	1039.49344	0.15855	8.2565E-05	-2.3205	-0.0012084	-2.1619	-0.0011258	520.7522506104108	78.105	0.82506	76.351	75.92	76.745	-1.7536	-0.033396	0.00063336	NaN	12.812	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23607	+		44980	20170	37217	37240							-0.024729123214683568
QDNVNVFLP	9	Unmodified	_QDNVNVFLP_					0	0	0			REV__nc|ENSG00000021826|P31327-3|CPS1	REV__nc|ENSG00000021826|P31327-3|CPS1	MULTI-MSMS	OvCa9_classI_Rep2	2	523.2696533203125	2	523.269281	1044.52401	0.43587	0.00022808	-0.76422	-0.00039989	-0.32835	-0.00017182	523.2687191280446	110.76	1.4312	110.62	110.19	111.62	-0.13961					94	28	4	0	0	0	0.48324	1	10445	10445		44.117	1.7207	1	245360	+		44981	16550	37218	37241	48430	48430					0.0035286606357658457
QDPKKLRAI	9	Unmodified	_QDPKKLRAI_					0	0	0			REV__ENST00000463995.5_1_3:49713127-49713790:+|nuORF	REV__ENST00000463995.5_1_3:49713127-49713790:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	534.8314819335938	2	534.82984	1067.64513	-0.22338	-0.00011947	-3.0981	-0.001657	-3.3215	-0.0017764	534.8280877814045	35.7	0.68961	35.7	35.429	36.119	0					33	14	3	0	0	0	0.44248	1	1826	1826		47.96	1.5027	1	221350	+		44982	20931	37219	37242	48431	48431					0.11401113496890503
QDPKKLRAI	9	Unmodified	_QDPKKLRAI_					0	0	0			REV__ENST00000463995.5_1_3:49713127-49713790:+|nuORF	REV__ENST00000463995.5_1_3:49713127-49713790:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	534.82984	1067.64513	-0.22338	-0.00011947	-3.0981	-0.001657	-3.3215	-0.0017764	534.8280877814045	35.7	0.68961	35.7	35.429	36.119	0	0	0	NaN	47.96	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221350	+		44983	20931	37219	37242							0.11401113496890503
QDPLPLEELL	10	Unmodified	_QDPLPLEELL_					0	0	0			REV__ENSG00000273749|ENST00000617928|CYFIP1	REV__ENSG00000273749|ENST00000617928|CYFIP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.8017578125	2	583.818804	1165.62306	-1.0003	-0.00058398	0.96395	0.00056277	-0.036324	-2.1207E-05	583.817823183405	49.508	0.26131	49.508	49.418	49.679	0					6	5	2	0	0	0	0.026895	1	3695	3695		67.494	8.7117	1	65200	+		44984	23618	37220	37243	48432	48432					0.04686844237812693
QDPLTHLLVI	10	Unmodified	_QDPLTHLLVI_					0	0	0		ENSG00000154258|ENST00000340001|ABCA9;nc|ENSG00000154258|Q8IUA7-4|ABCA9;nc|ENSG00000154258|Q8IUA7-3|ABCA9	ENSG00000154258|ENST00000340001|ABCA9	ENSG00000154258|ENST00000340001|ABCA9	MULTI-MSMS	OvCa9_classI_Rep3	3	574.837890625	2	574.837331	1147.66011	-1.4106	-0.00081085	0.80962	0.0004654	-0.60095	-0.00034545	574.8376960382861	90.862	4.6623	88.781	88.464	93.126	-2.0805					220	93	6	0	0	0	0.52439	1	5738	5738		51.193	0	1	4849000			44985	5723	37221	37244	48433	48433					0.09218560574208823
QDPLWALL	8	Unmodified	_QDPLWALL_					0	0	0			REV__nc|nan|Q8N4M7|C10orf126	REV__nc|nan|Q8N4M7|C10orf126	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.7791748046875	2	478.26601	954.517468	-0.85875	-0.00041071	2.1997	0.001052	1.3409	0.00064131	478.2667647866338	43.726	0.20777	40.718	40.536	40.744	-3.0074					5	3	2	0	0	0	0.028476	1	2113	2113		30.504	0	1	16022	+		44986	29241	37222	37245	48434	48434					0.038389729028381225
QDPLWMFL	8	Unmodified	_QDPLWMFL_					0	0	0		ENST00000455833.6_2_1:19230994-19231414:-|nuORF	ENST00000455833.6_2_1:19230994-19231414:-|nuORF	ENST00000455833.6_2_1:19230994-19231414:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	524.7942504882812	2	525.259871	1048.50519	-1.3668	-0.00071794	-1.5552	-0.00081688	-2.922	-0.0015348	525.760533226351	91.205	0.95965	89.181	88.879	89.839	-2.0241					25	18	2	0	0	0	0.028476	1	5750	5750		44.117	6.3053	1	111400			44987	12101	37223	37246	48435	48435					-0.01712386831832191
QDPPEEAEL	9	Unmodified	_QDPPEEAEL_					0	0	0		ENSG00000163516|ENST00000323348|ANKZF1;ENST00000490526.1_1_2:220097047-220098161:+|nuORF;ENST00000465550.5_1_2:220096537-220099084:+|nuORF;ENST00000461731.5_1_2:220094544-220099084:+|nuORF;ENST00000474225.5_1_2:220094544-220097914:+|nuORF	ENSG00000163516|ENST00000323348|ANKZF1;ENST00000461731.5_1_2:220094544-220099084:+|nuORF	ENST00000461731.5_1_2:220094544-220099084:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.302978515625	2	514.232561	1026.45057	-1.1982	-0.00061615	-1.2004	-0.00061727	-2.3986	-0.0012334	514.2315984854226	120.47	0.73265	119.13	118.61	119.35	-1.3444					17	13	2	0	0	0	0.027462	1	11301	11301		31.53	0	1	10018			44988	6319;12183	37224	37247	48436	48436					-0.0615972716957458
QDPQANWVNQ	10	Unmodified	_QDPQANWVNQ_					0	0	0		nc|ENSG00000080031|Q9HD43-3|PTPRH;nc|ENSG00000080031|Q9HD43-2|PTPRH;ENSG00000080031|ENST00000376350|PTPRH;ENST00000588559.5_1_19:55705613-55720813:-|nuORF	nc|ENSG00000080031|Q9HD43-3|PTPRH	nc|ENSG00000080031|Q9HD43-3|PTPRH	MULTI-MSMS	OvCa9_classI_Rep2	2	600.2716064453125	2	600.275626	1198.5367	-5.4228	-0.0032552	-0.69491	-0.00041714	-6.1177	-0.0036723	600.2750319043287	159.18	1.1999	158.96	158.63	159.83	-0.22697					79	23	5	0	0	0	0.74374	1	16255	16255		25.574	3.6142	1	203880			44989	1627	37225	37248	48437	48437					-0.054627225441890914
QDPQQLPII	9	Unmodified	_QDPQQLPII_					0	0	0		ENSG00000196739|ENST00000356083|COL27A1;nc|ENSG00000196739|Q8IZC6-2|COL27A1	ENSG00000196739|ENST00000356083|COL27A1	ENSG00000196739|ENST00000356083|COL27A1	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.3035278320312	2	526.292756	1050.57096	-0.84151	-0.00044288	2.3752	0.0012501	1.5337	0.00080717	526.2937633011438	73.825	1.0907	71.337	71.024	72.115	-2.4873					33	21	2	0	0	0	0.027247	1	3624	3624		90.37	20.742	1	18643			44990	8647	37226	37249	48438	48438					0.04769725614710296
QDPQQLPII	9	Unmodified	_QDPQQLPII_					0	0	0		ENSG00000196739|ENST00000356083|COL27A1;nc|ENSG00000196739|Q8IZC6-2|COL27A1	ENSG00000196739|ENST00000356083|COL27A1	ENSG00000196739|ENST00000356083|COL27A1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	526.292756	1050.57096	-0.50211	-0.00026426	0.55993	0.00029468	0.057818	3.0429E-05	526.2925943349104	73.722	0.78883	71.322	70.949	71.738	-2.3999	-0.0077788	-0.001095	NaN	90.37	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22738			44991	8647	37226	37249							0.04769725614710296
QDPRFDAEAD	10	Unmodified	_QDPRFDAEAD_					0	0	0		PDE11A|p.D619Sfs*16|1|0.06|ENSG00000128655|chr2:177728087-177728106|GTGATCATGGCATCAACGTC/-|frameshift_variant;nc|ENSG00000128655|Q9HCR9-2|PDE11A;ENSG00000128655|ENST00000286063|PDE11A;ENST00000497003.5_1_2:178552959-178791632:-|nuORF;nc|ENSG00000128655|Q9HCR9-4|PDE11A;nc|ENSG00000128655|Q9HCR9-3|PDE11A	PDE11A|p.D619Sfs*16|1|0.06|ENSG00000128655|chr2:177728087-177728106|GTGATCATGGCATCAACGTC/-|frameshift_variant	PDE11A|p.D619Sfs*16|1|0.06|ENSG00000128655|chr2:177728087-177728106|GTGATCATGGCATCAACGTC/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.2952270507812	2	582.251817	1162.48908	-0.62473	-0.00036375	-1.7921	-0.0010435	-2.4168	-0.0014072	582.250898701185	52.958	1.2519	52.958	52.522	53.774	0					46	28	2	0	0	0	0.026956	1	4129	4129		14.137	3.2716	1	160830			44992	3899	37227	37250	48439	48439					-0.08566421535056179
QDPRILMAIN	10	Unmodified	_QDPRILMAIN_					0	0	0		nc|ENSG00000101856|O00264-2|PGRMC1;ENSG00000101856|ENST00000217971|PGRMC1	nc|ENSG00000101856|O00264-2|PGRMC1	nc|ENSG00000101856|O00264-2|PGRMC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	585.3596801757812	2	585.818615	1169.62268	-2.2561	-0.0013217	2.9832	0.0017476	0.7271	0.00042595	586.3226847565835	125.45	0.96243	124.03	123.52	124.48	-1.4143					23	18	2	0	0	0	0.026931	1	11966	11966		37.812	1.3648	1	16199			44993	14930	37228	37251	48440	48440					0.04465146036977785
QDPTLHFPSG	10	Unmodified	_QDPTLHFPSG_					0	0	0			REV__APC|p.S2449Yfs*25|1|0.1|ENSG00000134982|chr5:112842938-112842939|-/TACTTCAGAAACAATCCACTTTTCCCCAGTC|frameshift_variant	REV__APC|p.S2449Yfs*25|1|0.1|ENSG00000134982|chr5:112842938-112842939|-/TACTTCAGAAACAATCCACTTTTCCCCAGTC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.759521484375	2	549.764363	1097.51417	-0.03112	-1.7109E-05	3.4235	0.0018821	3.3923	0.001865	549.7658895585782	45.137	0.22271	45.137	45.023	45.245	0					7	4	2	0	0	0	0.026994	1	3107	3107		25.574	1.0549	1	62235	+		44994	15647	37229	37252	48441	48441					-0.030683219418278895
QDPWWSKI	8	Unmodified	_QDPWWSKI_					0	0	0			REV__OTOF|p.Y1215Mfs*57|1|0.35|ENSG00000115155|chr2:26473222-26473223|-/CTCAT|frameshift_variant	REV__OTOF|p.Y1215Mfs*57|1|0.35|ENSG00000115155|chr2:26473222-26473223|-/CTCAT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.3084716796875	2	530.266542	1058.51853	-0.55739	-0.00029557	0.23717	0.00012576	-0.32022	-0.0001698	530.2683430067112	53.796	0.49739	53.796	53.432	53.929	0					26	11	3	0	0	0	0.028476	1	4277	4277		44.117	0	1	555110	+		44995	18221	37230	37253	48442	48442					-0.008388127282387359
QDQEKKIVQ	9	Unmodified	_QDQEKKIVQ_					0	0	0			REV__ENST00000551417.1_1_6:88857390-88875564:-|nuORF	REV__ENST00000551417.1_1_6:88857390-88875564:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.2797241210938	2	558.306395	1114.59824	0.58837	0.00032849	-1.0865	-0.00060658	-0.49809	-0.00027809	558.3057781598629	45.18	1.0025	45.18	44.932	45.934	0					55	22	4	0	0	0	0.027433	1	3139	3139		54.776	21.964	1	5230800	+		44996	27485	37231	37254	48443	48443					0.04552209155099263
QDQEYTVK	8	Unmodified	_QDQEYTVK_					0	0	0			REV__ENST00000606225.1_1_15:64464132-64481629:-|nuORF	REV__ENST00000606225.1_1_15:64464132-64481629:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.3406677246094	2	505.743096	1009.47164	-0.24932	-0.00012609	-0.35547	-0.00017978	-0.60479	-0.00030587	505.7428123300292	133.95	0.44249	133.72	133.51	133.95	-0.22696					14	8	2	0	0	0	0.028476	1	13269	13269		34.173	3.6689	1	19024	+		44997	28074	37232	37255	48444	48444					-0.03271717070037994
QDQKILSL	8	Unmodified	_QDQKILSL_					0	0	0		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	MULTI-SECPEP	OvCa9_classI_Rep2	2	471.8079833984375	2	472.7742	943.533846	-0.38915	-0.00018398	-0.11886	-5.6195E-05	-0.50802	-0.00024018	472.77388917814454	67.132	0.9914	64.471	64.049	65.041	-2.661					22	19	2	0	0	0	0.028476	1	5262	5262		11.511	0	1	42133			44998	4726	37233	37256	48445	48445					0.05982054068965681
QDQQGCGIHAI	11	Unmodified	_QDQQGCGIHAI_					0	0	0		ENSG00000198889|ENST00000371126|DCAF12L1	ENSG00000198889|ENST00000371126|DCAF12L1	ENSG00000198889|ENST00000371126|DCAF12L1	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.33203125	2	585.272029	1168.52951	1.605	0.00093937	-0.19232	-0.00011256	1.4127	0.00082681	585.2709142922114	96.922	0.298	96.922	96.71	97.008	0					13	6	3	0	0	0	0.025638	1	10634	10634		17.468	0	1	172330			44999	8902	37234	37257	48446	48446					-0.04801778416231173
QDQSQAKLED	10	Unmodified	_QDQSQAKLED_					0	0	0		nc|ENSG00000155966|P51816-2|AFF2;nc|ENSG00000155966|P51816-6|AFF2;nc|ENSG00000155966|P51816-3|AFF2;nc|ENSG00000155966|P51816-5|AFF2;ENSG00000155966|ENST00000370460|AFF2;nc|ENSG00000155966|P51816-4|AFF2	nc|ENSG00000155966|P51816-2|AFF2	nc|ENSG00000155966|P51816-2|AFF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.302734375	2	581.272749	1160.53095	-1.034	-0.00060106	3.4953	0.0020317	2.4613	0.0014307	581.274655786942	53.312	0.47781	53.312	53.131	53.609	0					18	10	2	0	0	0	0.02792	1	4258	4258		90.37	21.583	1	688970			45000	5813	37235	37258	48447	48447					-0.04289865846521934
QDQSQAKLED	10	Unmodified	_QDQSQAKLED_					0	0	0		nc|ENSG00000155966|P51816-2|AFF2;nc|ENSG00000155966|P51816-6|AFF2;nc|ENSG00000155966|P51816-3|AFF2;nc|ENSG00000155966|P51816-5|AFF2;ENSG00000155966|ENST00000370460|AFF2;nc|ENSG00000155966|P51816-4|AFF2	nc|ENSG00000155966|P51816-2|AFF2	nc|ENSG00000155966|P51816-2|AFF2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	581.272749	1160.53095	-0.69619	-0.00040468	7.4996	0.0043593	6.8034	0.0039546	581.2766894847193	56.39	0.30183	53.095	52.97	53.272	-3.2944	-0.10835	0.0042209	NaN	90.37	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24844			45001	5813	37235	37258							-0.04289865846521934
QDQYTGDVEAF	11	Unmodified	_QDQYTGDVEAF_					0	0	0		sp|Q6SWD1|RL11_HCMVMMembraneglycoproteinRL11OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL11PE=3SV=1;sp|P16809|IR11_HCMVAViralFc-gammareceptor-likeproteinIR11OS=Humancytomegalovirus(strainAD169)OX=10360PE=3SV=1	sp|Q6SWD1|RL11_HCMVMMembraneglycoproteinRL11OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL11PE=3SV=1	sp|Q6SWD1|RL11_HCMVMMembraneglycoproteinRL11OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL11PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	424.890380859375	3	424.850814	1271.53061	-0.13373	-5.6814E-05	3.5825	0.001522	3.4487	0.0014652	424.85295129194776	20.675	0.59035	19.337	19.005	19.595	-1.3386					14	11	2	0	0	0	0.025568	1	92	92		39.873	3.4264	1	11812			45002	32902	37236	37259	48448	48448					-0.09429285566397994
QDRARMFRMLN	11	Unmodified	_QDRARMFRMLN_					0	0	0		ENST00000478894.6_1_3:158289053-158300472:+|nuORF;ENST00000491767.5_1_3:158289053-158314699:+|nuORF	ENST00000478894.6_1_3:158289053-158300472:+|nuORF	ENST00000478894.6_1_3:158289053-158300472:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.7720947265625	3	479.911579	1436.71291	-0.94418	-0.00045312	-0.096203	-4.6169E-05	-1.0404	-0.00049929	480.2464308767875	73.369	0.53242	69.973	69.736	70.269	-3.3961					16	10	2	0	0	0	0.025726	1	5699	5699		36.528	6.9772	1	26807			45003	12499	37237	37260	48449	48449					0.012018720937476246
QDRSIYEDTGI	11	Unmodified	_QDRSIYEDTGI_					0	0	0		tr|A0A553SHL3|A0A553SHL3_NIACIDeoxynucleosidekinaseOS=NialliacirculansOX=1397GN=CEQ21_13105PE=3SV=1	tr|A0A553SHL3|A0A553SHL3_NIACIDeoxynucleosidekinaseOS=NialliacirculansOX=1397GN=CEQ21_13105PE=3SV=1	tr|A0A553SHL3|A0A553SHL3_NIACIDeoxynucleosidekinaseOS=NialliacirculansOX=1397GN=CEQ21_13105PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	433.7469787597656	3	432.87373	1295.59936	0.49976	0.00021633	-1.104	-0.00047789	-0.60424	-0.00026156	432.8731448211179	48.223	0.61488	45.115	44.938	45.553	-3.1077					18	11	2	0	0	0	0.025955	1	2668	2668		9.2118	0	1	26881			45004	33284	37238	37261	48450	48450					-0.03661621266678594
QDRVPGLLLLL	11	Unmodified	_QDRVPGLLLLL_					0	0	0			REV__ENST00000317623.8_2_14:60558690-60558942:+|nuORF	REV__ENST00000317623.8_2_14:60558690-60558942:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	412.926513671875	3	412.927329	1235.76016	-0.25244	-0.00010424	-2.0007	-0.00082612	-2.2531	-0.00093036	412.92657077571874	54.81	2.7333	51.996	51.573	54.306	-2.8139					157	54	5	0	0	0	0.67685	1	3802	3802		37.6	3.6783	1	2429000	+		45005	24416	37239	37262	48451	48451					0.15170797908058375
QDRVTSELLR	10	Unmodified	_QDRVTSELLR_					0	0	0		ENST00000514430.5_1_4:103590092-103612100:-|nuORF;ENSG00000109323|ENST00000647097|MANBA	ENST00000514430.5_1_4:103590092-103612100:-|nuORF	ENST00000514430.5_1_4:103590092-103612100:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	608.9852905273438	2	608.835851	1215.65715	-0.36192	-0.00022035	-1.8562	-0.0011301	-2.2181	-0.0013505	608.8349606087758	78.787	0.7061	77.047	76.807	77.513	-1.7398					29	12	3	0	0	0	0.026522	1	6631	6631		75.043	14.925	1	25490			45006	2708	37240	37263	48452	48452					0.05794685449427561
QDRVTSELLR	10	Unmodified	_QDRVTSELLR_					0	0	0		ENST00000514430.5_1_4:103590092-103612100:-|nuORF;ENSG00000109323|ENST00000647097|MANBA	ENST00000514430.5_1_4:103590092-103612100:-|nuORF	ENST00000514430.5_1_4:103590092-103612100:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	608.835851	1215.65715	1.7031	0.0010369	-3.6505	-0.0022225	-1.9473	-0.0011856	608.8331740889266	79.328	0.80514	76.988	76.657	77.463	-2.3399	-0.029609	-0.0013223	NaN	75.043	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27581			45007	2708	37240	37263							0.05794685449427561
QDRWAPAPT	9	Unmodified	_QDRWAPAPT_					0	0	0			REV__nc|ENSG00000148339|Q6KCM7-4|SLC25A25	REV__nc|ENSG00000148339|Q6KCM7-4|SLC25A25	MULTI-MSMS	OvCa99_classI_Rep5	1	521.25732421875	2	521.259248	1040.50394	-1.2603	-0.00065692	-2.9027	-0.0015131	-4.163	-0.00217	521.2576598099229	28.526	0.59816	28.526	28.14	28.739	0					15	11	3	0	0	0	0.33652	1	942	942		58.782	0.55203	1	184670	+		45008	28918	37241	37264	48453	48453					-0.01468884876408083
QDSEKRHLET	10	Unmodified	_QDSEKRHLET_					0	0	0			REV__ENST00000462156.1_1_2:231253312-231253381:+|nuORF	REV__ENST00000462156.1_1_2:231253312-231253381:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.5480041503906	3	414.873953	1241.60003	0.29919	0.00012413	-3.3729	-0.0013993	-3.0737	-0.0012752	415.20752536085945	49.214	0.21175	49.214	49.075	49.287	0					6	4	2	0	0	0	0.026931	1	3654	3654		12.433	0	1	66399	+		45009	26110	37242	37265	48454	48454					-0.01110781826969287
QDSEWGHSL	9	Unmodified	_QDSEWGHSL_					0	0	0		nc|ENSG00000168070|Q3KP22-4|MAJIN;nc|ENSG00000168070|Q3KP22|MAJIN;chr11:64947465-64954757|300|10.53|0.64|4.04|-|ENST00000530444|MAJIN,MAJIN	nc|ENSG00000168070|Q3KP22-4|MAJIN	nc|ENSG00000168070|Q3KP22-4|MAJIN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.3072509765625	2	529.73052	1057.44649	-0.51215	-0.0002713	3.2279	0.0017099	2.7157	0.0014386	529.7326455959858	59.842	0.19517	56.427	56.324	56.519	-3.4146					6	3	2	0	0	0	0.027462	1	4025	4025		31.53	0	1	25624			45010	297	37243	37266	48455	48455					-0.07993771872611433
QDSHRYLL	8	Unmodified	_QDSHRYLL_					0	0	0			REV__ENST00000417499.1_1_16:299599-304410:+|nuORF	REV__ENST00000417499.1_1_16:299599-304410:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.2434692382812	2	516.267073	1030.51959	-0.57196	-0.00029529	1.7918	0.00092506	1.2199	0.00062977	516.267223768948	52.277	0.40489	49.069	48.893	49.298	-3.208					11	7	2	0	0	0	0.028476	1	3137	3137		23.042	11.531	1	50430	+		45011	25562	37244	37267	48456	48456					0.005554016406676965
QDSKKVEII	9	Unmodified	_QDSKKVEII_					0	0	0		MALT1|p.D517Rfs*7|1|0.58|ENSG00000172175|chr18:58735270-58735271|-/A|frameshift_variant;MALT1|p.G766Efs*2|1|0.04|ENSG00000172175|chr18:58747663-58747664|-/A|frameshift_variant;nc|ENSG00000172175|Q9UDY8-2|MALT1;MALT1|p.N767Hfs*49|1|0.04|ENSG00000172175|chr18:58747664-58747665|-/GCACATGCCACTACACCCAGCTAATTTTT|frameshift_variant;ENSG00000172175|ENST00000649217|MALT1	MALT1|p.D517Rfs*7|1|0.58|ENSG00000172175|chr18:58735270-58735271|-/A|frameshift_variant	MALT1|p.D517Rfs*7|1|0.58|ENSG00000172175|chr18:58735270-58735271|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	530.3057250976562	2	530.305864	1058.59717	-1.1013	-0.00058405	0.98185	0.00052068	-0.11948	-6.3363E-05	530.3062513399692	59.112	1.9095	56.332	55.74	57.649	-2.7801					134	36	6	0	0	0	0.070405	1	4302	4302		107.01	19.311	1	765210			45012	7272	37245	37268	48457	48457					0.07021994786191499
QDSLFKRH	8	Unmodified	_QDSLFKRH_					0	0	0			REV__nc|ENSG00000147231|Q6NSI4-3|RADX	REV__nc|ENSG00000147231|Q6NSI4-3|RADX	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2918701171875	2	515.775065	1029.53558	-0.31579	-0.00016288	3.9	0.0020115	3.5842	0.0018486	516.2780354748522	52.478	0.13189	52.478	52.39	52.522	0					4	2	2	0	0	0	0.028476	1	4114	4114		55.504	0	1	29071	+		45013	20053	37246	37269	48458	48458					0.021991078775727146
QDSLTPYLDV	10	Unmodified	_QDSLTPYLDV_					0	0	0			REV__ENST00000558906.5_1_15:50152393-50311102:-|nuORF	REV__ENST00000558906.5_1_15:50152393-50311102:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	574.8375854492188	2	575.784961	1149.55537	-1.6363	-0.00094214	-1.6323	-0.00093985	-3.2685	-0.001882	575.7835838093151	91.576	1.3508	89.551	88.829	90.18	-2.0241					43	26	3	0	0	0	0.026551	1	5674	5674		35.152	0	1	47371	+		45014	17640	37247	37270	48459	48459					-0.013426056930029517
QDSSLHMP	8	Unmodified	_QDSSLHMP_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENST00000573175.1_1_17:4451225-4453465:-|nuORF	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.2850036621094	2	457.70546	913.396366	1.7083	0.0007819	0.55272	0.00025298	2.261	0.0010349	457.70617562889873	92.194	0.3353	92.194	92.092	92.428	0					12	7	2	0	0	0	0.028476	1	9966	9966		21.96	0	1	136980			45015	4133	37248	37271	48460	48460					-0.06379597802117587
QDSVSWSFV	9	Unmodified	_QDSVSWSFV_					0	0	0			REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.7901000976562	2	527.745639	1053.47673	-1.4466	-0.00076345	-4.0437	-0.002134	-5.4903	-0.0028975	527.7430704561829	70.372	0.14692	66.891	66.787	66.934	-3.4812					4	2	2	0	0	0	0.027462	1	5317	5317		20.947	0	1	6852.8	+		45016	20863	37249	37272	48461	48461					-0.04787413207418467
QDSYWMAQFDV	11	Unmodified	_QDSYWMAQFDV_					0	0	0			REV__ENSG00000078098|ENST00000188790|FAP	REV__ENSG00000078098|ENST00000188790|FAP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.2803039550781	3	463.864177	1388.5707	-0.18902	-8.7678E-05	1.2302	0.00057063	1.0412	0.00048295	464.19894158891094	83.737	0.24059	81.074	80.926	81.167	-2.6629					6	4	2	0	0	0	0.026174	1	6973	6973		17.167	4.7339	1	11560	+		45017	17020	37250	37273	48462	48462					-0.10804062167471784
QDTGLTILL	9	Unmodified	_QDTGLTILL_					0	0	0		MEIS3|p.Q308L|1|0.1|ENSG00000105419|chr19:47407364-47407364|T/A|missense_variant	MEIS3|p.Q308L|1|0.1|ENSG00000105419|chr19:47407364-47407364|T/A|missense_variant	MEIS3|p.Q308L|1|0.1|ENSG00000105419|chr19:47407364-47407364|T/A|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	487.28314208984375	2	487.281857	972.549162	0.70873	0.00034535	1.5143	0.00073787	2.223	0.0010832	487.282420081065	141.94	0.89906	141.94	141.44	142.34	0					38	17	3	0	0	0	0.12515	1	16577	16577		90.37	8.1293	1	214410			45018	14829	37251	37274	48463	48463					0.06178920866148019
QDTLELELVL	10	Unmodified	_QDTLELELVL_					0	0	0		FNBP4|p.E749Gfs*13|1|0.12|ENSG00000109920|chr11:47724541-47724541|T/-|frameshift_variant;ENSG00000109920|ENST00000263773|FNBP4;nc|ENSG00000109920|Q8N3X1-2|FNBP4	FNBP4|p.E749Gfs*13|1|0.12|ENSG00000109920|chr11:47724541-47724541|T/-|frameshift_variant	FNBP4|p.E749Gfs*13|1|0.12|ENSG00000109920|chr11:47724541-47724541|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	586.8259887695312	2	586.824086	1171.63362	0.76579	0.00044939	0.59123	0.00034695	1.357	0.00079633	586.8243055657107	153.39	2.2744	153.39	152.9	155.17	0					137	45	5	0	0	0	0.60504	1	18004	18004		41.427	2.1738	1	2850600			45019	2742	37252	37275	48464	48464					0.05466826892234167
QDTLSIAIL	9	Unmodified	_QDTLSIAIL_					0	0	0		ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.282470703125	2	487.281857	972.549162	0.31716	0.00015454	-1.3078	-0.00063728	-0.99067	-0.00048274	487.2812648001119	98.127	3.3235	95.748	95.216	98.54	-2.3786					197	64	5	0	0	0	0.18193	1	8806	8806		79.451	0	1	10553000			45020	1872	37253	37276	48465	48465					0.061789208661252815
QDTLTPEVLL	10	Unmodified	_QDTLTPEVLL_					0	0	0		nc|ENSG00000197891|Q96S37-3|SLC22A12;nc|ENSG00000197891|Q96S37-2|SLC22A12;nc|ENSG00000197891|Q96S37-4|SLC22A12;ENSG00000197891|ENST00000377574|SLC22A12	nc|ENSG00000197891|Q96S37-3|SLC22A12	nc|ENSG00000197891|Q96S37-3|SLC22A12	MULTI-SECPEP	OvCa9_classI_Rep2	2	563.8328247070312	2	564.810979	1127.6074	-1.9303	-0.0010902	-0.47788	-0.00026991	-2.4081	-0.0013601	564.8106176349336	37.613	0.83681	34.903	34.682	35.519	-2.7097					41	16	4	0	0	0	0.026577	1	1681	1681		77.318	17.199	1	94842			45021	8759	37254	37277	48466	48466					0.04870557720778379
QDTRRMVF	8	Unmodified	_QDTRRMVF_					0	0	0			REV__ENST00000397887.7_1_21:46271014-46271176:-|nuORF	REV__ENST00000397887.7_1_21:46271014-46271176:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.8544921875	2	526.768926	1051.5233	0.24694	0.00013008	-1.1889	-0.00062629	-0.94199	-0.00049621	526.7682736867067	128.35	1.1854	127.26	127.02	128.21	-1.0933					38	23	3	0	0	0	0.028476	1	10073	10073		35.201	9.7505	1	72473	+		45022	25364	37255	37278	48467	48467					-0.0004025185712634993
QDTTYLKVN	9	Unmodified	_QDTTYLKVN_					0	0	0			REV__nc|ENSG00000113580|P04150-7|NR3C1	REV__nc|ENSG00000113580|P04150-7|NR3C1	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.80615234375	2	541.279846	1080.54514	-0.63908	-0.00034592	-2.0096	-0.0010877	-2.6487	-0.0014337	541.7799051663429	85.383	1.2869	83.162	82.498	83.785	-2.2204					57	25	3	0	0	0	0.027462	1	4982	4982		39.253	5.0803	1	43813	+		45023	18159	37256	37279	48468	48468					0.008088313724329055
QDVDKTLKL	9	Unmodified	_QDVDKTLKL_					0	0	0			REV__nc|ENSG00000184305|Q9C0I3-2|CCSER1	REV__nc|ENSG00000184305|Q9C0I3-2|CCSER1	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.8173217773438	2	530.305864	1058.59717	-0.46676	-0.00024753	0.44177	0.00023427	-0.024994	-1.3255E-05	530.3060152079323	48.275	1.1773	48.275	48.028	49.206	0					50	26	4	0	0	0	0.027358	1	3622	3622		75.043	20.267	1	1793900	+		45024	22420	37257	37280	48469	48469					0.07021994786191499
QDVGDAGRLLL	11	Unmodified	_QDVGDAGRLLL_					0	0	0		ENSG00000130764|ENST00000378251|LRRC47	ENSG00000130764|ENST00000378251|LRRC47	ENSG00000130764|ENST00000378251|LRRC47	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.78173828125	2	578.81967	1155.62479	-0.79449	-0.00045987	1.6292	0.00094303	0.83474	0.00048316	578.8204622241082	55.168	0.83617	55.168	54.805	55.641	0					41	19	3	0	0	0	0.025958	1	4523	4523		21.686	0	1	1931200			45025	4012	37258	37281	48470	48470					0.053198980464458145
QDVKKEKAEL	10	Unmodified	_QDVKKEKAEL_					0	0	0			REV__tr|A0A553SQR2|A0A553SQR2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07170PE=4SV=1	REV__tr|A0A553SQR2|A0A553SQR2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07170PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	593.8069458007812	2	594.335153	1186.65575	-0.85216	-0.00050647	-0.87562	-0.00052041	-1.7278	-0.0010269	594.3344041956547	84.276	1.2453	82.015	81.7	82.945	-2.261					36	25	2	0	0	0	0.02676	1	4908	4908		49.536	19.218	1	32083	+		45026	30655	37259	37282	48471	48471					0.06989051360665144
QDVLGIRQL	9	Unmodified	_QDVLGIRQL_					0	0	0		ENST00000528599.1_1_6:111894079-111913289:-|nuORF;ENST00000532708.5_1_6:111888790-111922417:-|nuORF;nc|ENSG00000056972|O43734-5|TRAF3IP2;ENSG00000056972|ENST00000368761|TRAF3IP2;nc|ENSG00000056972|O43734|TRAF3IP2	ENST00000528599.1_1_6:111894079-111913289:-|nuORF	ENST00000528599.1_1_6:111894079-111913289:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	521.3060913085938	2	521.306198	1040.59784	2.0698	0.001079	-2.5859	-0.0013481	-0.51613	-0.00026906	521.3048726793338	89.547	3.4201	88.245	87.84	91.26	-1.302					132	66	4	0	0	0	0.0070314	13	7866	7866;7870;7875;7881;7887;7893;7899;7905;7911;7918;7925;7932;7939		215.39	0	1	2063200			45027	1230	37260	37283	48472;48473;48474;48475;48476;48477;48478;48479;48480;48481;48482;48483;48484	48472					0.07916834225898128
QDVLGIRQL	9	Unmodified	_QDVLGIRQL_					0	0	0		ENST00000528599.1_1_6:111894079-111913289:-|nuORF;ENST00000532708.5_1_6:111888790-111922417:-|nuORF;nc|ENSG00000056972|O43734-5|TRAF3IP2;ENSG00000056972|ENST00000368761|TRAF3IP2;nc|ENSG00000056972|O43734|TRAF3IP2	ENST00000528599.1_1_6:111894079-111913289:-|nuORF	ENST00000528599.1_1_6:111894079-111913289:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	521.3071899414062	2	521.306198	1040.59784	-0.5624	-0.00029318	-0.051114	-2.6646E-05	-0.61352	-0.00031983	521.3062020063311	90.264	2.3254	88.184	87.798	90.124	-2.0805					76	45	2	0	0	0	0.0070314	11	5590	5585;5590;5596;5602;5608;5614;5621;5633;5640;5648;5654		215.39	0	1	3894900			45028	1230	37260	37283	48485;48486;48487;48488;48489;48490;48491;48492;48493;48494;48495	48486					0.07916834225898128
QDVLGIRQL	9	Unmodified	_QDVLGIRQL_					0	0	0		ENST00000528599.1_1_6:111894079-111913289:-|nuORF;ENST00000532708.5_1_6:111888790-111922417:-|nuORF;nc|ENSG00000056972|O43734-5|TRAF3IP2;ENSG00000056972|ENST00000368761|TRAF3IP2;nc|ENSG00000056972|O43734|TRAF3IP2	ENST00000528599.1_1_6:111894079-111913289:-|nuORF	ENST00000528599.1_1_6:111894079-111913289:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.3075561523438	2	521.306198	1040.59784	-0.49402	-0.00025754	-0.098025	-5.1101E-05	-0.59205	-0.00030864	521.3061811985511	90.712	2.5433	88.137	87.801	90.345	-2.575					112	49	5	0	0	0	0.0079861	8	7848	7813;7824;7836;7848;7860;7872;7887;7900		215.39	0	1	3211900			45029	1230	37260	37283	48496;48497;48498;48499;48500;48501;48502;48503	48499					0.07916834225898128
QDVLLGALPP	10	Unmodified	_QDVLLGALPP_					0	0	0			REV__ENSG00000108932|ENST00000580666|SLC16A6	REV__ENSG00000108932|ENST00000580666|SLC16A6	MULTI-MSMS	OvCa99_classI_Rep5	1	511.79937744140625	2	511.797675	1021.5808	1.8777	0.00096099	1.5132	0.00077447	3.3909	0.0017355	511.79824065646653	79.552	1.8763	79.552	79.16	81.037	0					141	45	4	0	0	0	0.46756	1	8147	8147		58.782	8.7574	1	3983800	+		45030	17911	37261	37284	48504	48504					0.07086913620082669
QDVVILLDSIT	11	Unmodified	_QDVVILLDSIT_					0	0	0		tr|A0A7D6VNU9|A0A7D6VNU9_9CLOTTranscriptionterminationfactorRhoOS=ClostridiumintestinaleOX=36845GN=rhoPE=3SV=1	tr|A0A7D6VNU9|A0A7D6VNU9_9CLOTTranscriptionterminationfactorRhoOS=ClostridiumintestinaleOX=36845GN=rhoPE=3SV=1	tr|A0A7D6VNU9|A0A7D6VNU9_9CLOTTranscriptionterminationfactorRhoOS=ClostridiumintestinaleOX=36845GN=rhoPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	609.3294067382812	2	608.345186	1214.67582	0.12523	7.6186E-05	-2.5516	-0.0015522	-2.4263	-0.001476	608.3432801468256	60.963	0.68565	60.963	60.688	61.374	0					21	15	2	0	0	0	0.025677	1	5321	5321		21.686	0	1	164570			45031	34729	37262	37285	48505	48505					0.0770680230061771
QDVVQAIVN	9	Unmodified	_QDVVQAIVN_					0	0	0		ENSG00000080511|ENST00000591589|RDH8	ENSG00000080511|ENST00000591589|RDH8	ENSG00000080511|ENST00000591589|RDH8	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.32391357421875	2	493.269281	984.52401	0.77715	0.00038334	-3.8646	-0.0019063	-3.0874	-0.0015229	493.2677772397679	79.574	0.20817	77.879	77.767	77.975	-1.6951					6	3	2	0	0	0	0.027462	1	6678	6678		14.137	3.8719	1	6559.5			45032	1637	37263	37286	48506	48506					0.031128660635772576
QDWHSFLL	8	Unmodified	_QDWHSFLL_					0	0	0		nc|ENSG00000114956|Q16854-3|DGUOK;nc|ENSG00000114956|Q16854-5|DGUOK;ENSG00000114956|ENST00000264093|DGUOK;ENST00000462685.1_1_2:74173872-74185284:+|nuORF	nc|ENSG00000114956|Q16854-3|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.2640991210938	2	523.258717	1044.50288	-0.1774	-9.2828E-05	-0.34604	-0.00018107	-0.52344	-0.00027389	523.2582442682037	60.699	1.6607	57.269	56.749	58.41	-3.43					62	33	3	0	0	0	0.59148	1	4139	4139		65.803	2.4969	1	479790			45033	3051	37264	37287	48507	48507					-0.01759099245282414
QDWPLTQVTF	10	Unmodified	_QDWPLTQVTF_					0	0	0		nc|ENSG00000132185|Q7L513-10|FCRLA;nc|ENSG00000132185|Q7L513-9|FCRLA;nc|ENSG00000132185|Q7L513-2|FCRLA;ENSG00000132185|ENST00000236938|FCRLA;nc|ENSG00000132185|Q7L513-8|FCRLA;FCRLA|p.F151Hfs*51|1|0.18|ENSG00000132185|chr1:161711357-161711364|TTCTCCAT/-|frameshift_variant;ENST00000470841.1_1_1:161680536-161681272:+|nuORF	nc|ENSG00000132185|Q7L513-10|FCRLA	nc|ENSG00000132185|Q7L513-10|FCRLA	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.2352600097656	3	412.208273	1233.60299	1.3468	0.00055516	-3.3834	-0.0013947	-2.0366	-0.00083949	412.2067949266219	45.91	1.0952	45.91	45.667	46.762	0					68	24	6	0	0	0	0.026803	1	3266	3266		26.063	0	1	2634700			45034	4116	37265	37288	48508	48508					-0.004469067021545925
QDYIKLKKFI	10	Unmodified	_QDYIKLKKFI_					0	0	0		tr|A0A553SPL9|A0A553SPL9_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_26665PE=4SV=1	tr|A0A553SPL9|A0A553SPL9_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_26665PE=4SV=1	tr|A0A553SPL9|A0A553SPL9_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_26665PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	432.5956115722656	3	432.595579	1294.76491	-0.63357	-0.00027408	-1.6744	-0.00072432	-2.3079	-0.0009984	432.5948373666812	57.879	2.8015	55.087	54.625	57.426	-2.792					168	54	5	0	0	0	0.5635	4	4152	4152;4157;4163;4188		46.457	9.6898	1	528810			45035	34061	37266	37289	48509;48510;48511;48512	48509					0.12931682050793825
QDYQISKIYIM	11	Unmodified	_QDYQISKIYIM_					0	0	0			REV__tr|A0A553SIN2|A0A553SIN2_NIACIRenaldipeptidaseOS=NialliacirculansOX=1397GN=CEQ21_15085PE=4SV=1	REV__tr|A0A553SIN2|A0A553SIN2_NIACIRenaldipeptidaseOS=NialliacirculansOX=1397GN=CEQ21_15085PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.75433349609375	3	467.907606	1400.70099	0.057795	2.7043E-05	3.5248	0.0016493	3.5826	0.0016763	468.24405137525684	68.809	0.3701	68.809	68.649	69.019	0					18	8	3	0	0	0	0.025508	1	6536	6536		21.78	0	1	278540	+		45036	29910	37267	37290	48513	48513					0.016665338315533518
QEAKKVAVR	9	Unmodified	_QEAKKVAVR_					0	0	0		ENSG00000213079|ENST00000367178|SCAF8;nc|ENSG00000213079|Q9UPN6-2|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	MULTI-MSMS	OvCa9_classI_Rep2	2	514.814208984375	2	514.81419	1027.61383	2.5746	0.0013254	-2.6896	-0.0013847	-0.11509	-5.9251E-05	514.8126670332618	27.295	1.0989	24.585	24.394	25.493	-2.7097					55	24	4	0	0	0	0.28934	1	450	450		64.207	5.4253	1	264850			45037	9116	37268	37291	48514	48514					0.1011254046279646
QEAKLLQLKSE	11	Unmodified	_QEAKLLQLKSE_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	OvCa99_classI_Rep5	1	643.8713989257812	2	643.86936	1285.72417	2.3422	0.001508	-0.092696	-5.9684E-05	2.2495	0.0014484	643.8693051938658	110.44	0.76118	110.44	110.04	110.8	0					32	13	3	0	0	0	0.65063	1	12542	12542		40.058	4.9061	1	721250			45038	7740	37269	37292	48515	48515					0.09273295940511161
QEALIPLTL	9	Unmodified	_QEALIPLTL_					0	0	0			REV__tr|A0A7D6VTC5|A0A7D6VTC5_9CLOTProbablemultidrugresistanceproteinNorMOS=ClostridiumintestinaleOX=36845GN=HZF06_20710PE=4SV=1	REV__tr|A0A7D6VTC5|A0A7D6VTC5_9CLOTProbablemultidrugresistanceproteinNorMOS=ClostridiumintestinaleOX=36845GN=HZF06_20710PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.25921630859375	2	499.30005	996.585547	-0.026042	-1.3003E-05	-1.0833	-0.00054087	-1.1093	-0.00055388	499.29845383631596	32.143	0.2975	32.143	32.006	32.303	0					7	5	2	0	0	0	0.027462	1	1362	1362		37.159	14.117	1	12964	+		45039	31593	37270	37293	48516	48516					0.08711797762850892
QEALSIQLQP	10	Unmodified	_QEALSIQLQP_					0	0	0		ENST00000574735.1_1_17:5009121-5012368:-|nuORF;nc|ENSG00000167840|Q9UNY5-2|ZNF232;ENSG00000167840|ENST00000250076|ZNF232;ZNF232|p.K294Efs*11|1|0.09|ENSG00000167840|chr17:5106279-5106280|-/C|frameshift_variant	ENST00000574735.1_1_17:5009121-5012368:-|nuORF	ENST00000574735.1_1_17:5009121-5012368:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.8470458984375	2	563.808771	1125.60299	2.5548	0.0014404	4.0229	0.0022682	6.5778	0.0037086	564.3133903963756	116.48	0.76816	116.48	116	116.77	0					21	16	2	0	0	0	0.026826	1	13316	13316		36.447	8.5645	1	138190			45040	6842	37271	37294	48517	48517					0.0452109329785344
QEALVHLE	8	Unmodified	_QEALVHLE_					0	0	0			REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	REV__nc|ENSG00000160796|Q6ZNJ1-2|NBEAL2	MULTI-MSMS	OvCa99_classI_Rep5	1	469.7500305175781	2	469.750724	937.486896	1.0591	0.00049752	-2.0123	-0.00094527	-0.95317	-0.00044775	469.7496786237964	131.69	0.69954	131.69	131.48	132.18	0					26	14	2	0	0	0	0.64026	1	15301	15301		55.504	0	1	168130	+		45041	20674	37272	37295	48518	48518					0.015651945177978632
QEANVGKK	8	Unmodified	_QEANVGKK_					0	0	0		ENSG00000162722|ENST00000366481|TRIM58	ENSG00000162722|ENST00000366481|TRIM58	ENSG00000162722|ENST00000366481|TRIM58	MULTI-SECPEP	OvCa9_classI_Rep2	2	437.2610168457031	2	437.243067	872.47158	-0.47664	-0.00020841	0.8964	0.00039195	0.41976	0.00018354	437.2435027221972	50.3	0.64462	47.506	47.232	47.877	-2.794					16	12	2	0	0	0	0.028476	1	3237	3237		94.006	0	1	28922			45042	6220	37273	37296	48519	48519					0.03024327720618203
QEAPALVRL	9	Unmodified	_QEAPALVRL_					0	0	0		ENST00000316846.2_11:65545618-65547282:-|nuORF;ENSG00000254470|ENST00000532090|AP5B1	ENST00000316846.2_11:65545618-65547282:-|nuORF	ENST00000316846.2_11:65545618-65547282:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	498.796875	2	498.795466	995.57638	2.9006	0.0014468	-0.5113	-0.00025503	2.3893	0.0011918	498.79507557867345	89.741	0.98778	89.741	89.394	90.382	0					38	23	3	0	0	0	0.074342	1	9589	9589		104.75	32.869	1	1261500			45043	9445	37274	37297	48520	48520					0.07841449197189831
QEAQFHLQT	9	Unmodified	_QEAQFHLQT_					0	0	0		nc|ENSG00000158089|Q96FL9-3|GALNT14	nc|ENSG00000158089|Q96FL9-3|GALNT14	nc|ENSG00000158089|Q96FL9-3|GALNT14	MULTI-SECPEP	OvCa9_classI_Rep3	3	551.831298828125	2	551.269813	1100.52507	-1.3802	-0.00076088	0.51773	0.00028541	-0.8625	-0.00047547	551.7716578972484	101.03	0.41465	99.42	99.294	99.708	-1.6053					11	7	2	0	0	0	0.027462	1	6914	6914		39.253	3.6345	1	11219			45044	15120	37275	37298	48521	48521					-0.021169195675156516
QEARLYRRLA	10	Unmodified	_QEARLYRRLA_					0	0	0			REV__nc|ENSG00000105290|P51693|APLP1	REV__nc|ENSG00000105290|P51693|APLP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	639.2801513671875	2	638.367653	1274.72075	1.4533	0.00092775	1.533	0.00097859	2.9863	0.0019063	638.8688957733119	138.91	0.57895	138.91	138.64	139.22	0					13	11	2	0	0	0	0.026881	1	16181	16181		32.812	15.344	1	30039	+		45045	17709	37276	37299	48522	48522					0.09438090677190303
QEAVQLQPLY	10	Unmodified	_QEAVQLQPLY_					0	0	0			REV__ENSG00000151838|ENST00000537690|CCDC175	REV__ENSG00000151838|ENST00000537690|CCDC175	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.3165893554688	2	594.816596	1187.61864	2.3553	0.001401	-2.4076	-0.0014321	-0.052244	-3.1076E-05	595.3172400055626	82.714	0.85336	82.714	82.351	83.204	0					61	19	6	0	0	0	0.026688	1	8585	8585		49.442	10.189	1	2353900	+		45046	20258	37277	37300	48523	48523					0.032333798149238646
QECCSFNPNQ	10	Unmodified	_QECCSFNPNQ_					0	0	0		ENST00000465304.5_1_3:122313378-122329447:+|nuORF	ENST00000465304.5_1_3:122313378-122329447:+|nuORF	ENST00000465304.5_1_3:122313378-122329447:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.8468017578125	2	585.221148	1168.42774	2.7867	0.0016309	-3.8152	-0.0022327	-1.0285	-0.00060189	585.2189524809208	97.317	0.29948	97.317	97.18	97.479	0					10	6	2	0	0	0	0.026994	1	10697	10697		32.812	0	1	119090			45047	12270	37278	37301	48524	48524					-0.14973392830324883
QECQKHCPE	9	Unmodified	_QECQKHCPE_					0	0	0		ENST00000383376.9_1_18:12008408-12017827:+|nuORF	ENST00000383376.9_1_18:12008408-12017827:+|nuORF	ENST00000383376.9_1_18:12008408-12017827:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.81494140625	2	551.226233	1100.43791	1.9811	0.001092	-3.9728	-0.0021899	-1.9917	-0.0010979	551.2241114310752	82.372	0.38392	82.372	82.181	82.565	0					14	8	2	0	0	0	0.027462	1	8503	8503		32.812	3.6629	1	394970			45048	11184	37279	37302	48525	48525					-0.10828785105104544
QECVKRNREEE	11	Unmodified	_QECVKRNREEE_					0	0	0		AKAP9-CDK14|2|fusion;AKAP9-CDK14|1|fusion;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9	AKAP9-CDK14|2|fusion	AKAP9-CDK14|2|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.7814025878906	3	473.893018	1418.65723	3.2121	0.0015222	-1.3474	-0.00063851	1.8647	0.00088369	473.892326213646	88.614	0.53865	88.614	88.384	88.922	0					18	12	2	0	0	0	0.025524	1	9452	9452		30.139	0.58839	1	406420			45049	58	37280	37303	48526	48526					-0.03535682612846358
QEDEVMRAYL	10	Unmodified	_QEDEVMRAYL_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3;ENST00000397300.2_1_11:93921617-93921950:-|nuORF	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	MULTI-MSMS	OvCa99_classI_Rep5	1	627.2994384765625	2	627.29517	1252.57579	1.3901	0.00087199	0.56156	0.00035227	1.9516	0.0012243	627.2952943871917	93.438	0.49355	93.438	93.179	93.673	0					26	11	3	0	0	0	0.15491	1	10124	10124		101.25	39.145	1	1601700			45050	2813	37281	37304	48527	48527					-0.0403975830483887
QEDEWVNVQY	10	Unmodified	_QEDEWVNVQY_					0	0	0		ENST00000582201.5_1_17:62781409-62811241:-|nuORF;ENSG00000225190|ENST00000430334|PLEKHM1;ENST00000582035.1_1_17:43530658-43531768:-|nuORF	ENST00000582201.5_1_17:62781409-62811241:-|nuORF;ENST00000582035.1_1_17:43530658-43531768:-|nuORF	ENST00000582201.5_1_17:62781409-62811241:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	436.21435546875	3	437.194692	1308.56225	0.67494	0.00029508	3.4898	0.0015257	4.1647	0.0018208	437.19607023748597	33.214	1.0267	33.214	33.039	34.065	0					37	20	4	0	0	0	0.026975	1	1597	1597		31.634	0	1	58457			45051	9260;14002	37282	37305	48528	48528					-0.07969292812413187
QEDEYIQSH	9	Unmodified	_QEDEYIQSH_					0	0	0		nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	MULTI-MSMS	OvCa99_classI_Rep5	1	574.7447509765625	2	574.746367	1147.47818	-0.65971	-0.00037917	-2.041	-0.0011731	-2.7008	-0.0015522	574.7450093909104	41.395	1.2228	41.395	41.149	42.372	0					56	27	4	0	0	0	0.55011	1	2579	2579		37.812	1.3648	1	1189400			45052	8478	37283	37306	48529	48529					-0.08965823909329629
QEDFNKTE	8	Unmodified	_QEDFNKTE_					0	0	0		ENSG00000107890|ENST00000376087|ANKRD26;nc|ENSG00000107890|Q9UPS8-2|ANKRD26	ENSG00000107890|ENST00000376087|ANKRD26	ENSG00000107890|ENST00000376087|ANKRD26	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.75982666015625	2	505.724904	1009.43525	-0.24621	-0.00012452	-1.8596	-0.00094047	-2.1059	-0.001065	505.7236898316312	71.423	0.47777	71.423	71.23	71.707	0					19	11	2	0	0	0	0.028476	1	6882	6882		29.15	14.485	1	538070			45053	2626	37284	37307	48530	48530					-0.06908593966750232
QEDPEKIQ	8	Unmodified	_QEDPEKIQ_					0	0	0		nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENSG00000059122|ENST00000253928|FLYWCH1;nc|ENSG00000059122|Q4VC44-3|FLYWCH1;nc|ENSG00000059122|Q4VC44-4|FLYWCH1;nc|ENSG00000059122|Q4VC44-5|FLYWCH1;ENST00000570752.5_1_16:2986460-2998725:+|nuORF;ENST00000574985.1_1_16:2986529-2998725:+|nuORF	nc|ENSG00000059122|Q4VC44-2|FLYWCH1;nc|ENSG00000059122|Q4VC44-5|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.32354736328125	2	493.743096	985.47164	-0.40486	-0.0001999	2.2233	0.0010977	1.8184	0.00089782	493.7436919087409	35.759	0.27882	35.759	35.614	35.892	0					10	5	2	0	0	0	0.028476	1	1842	1842		62.107	3.3255	1	47127			45054	1251;13899	37285	37308	48531	48531					-0.021677170700399984
QEDRQLINAL	10	Unmodified	_QEDRQLINAL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238252944-238263658:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	600.3253784179688	2	600.322576	1198.6306	3.3411	0.0020057	-1.0398	-0.00062424	2.3012	0.0013815	600.3218160694857	88.023	0.83902	88.023	87.712	88.551	0					57	19	4	0	0	0	0.13777	2	9359	9331;9359		104.06	20.41	1	7148000			45055	6293	37286	37309	48532;48533	48533					0.039229965580943826
QEDSKPITL	9	Unmodified	_QEDSKPITL_					0	0	0		ENSG00000141905|ENST00000443272|NFIC;nc|ENSG00000141905|P08651-2|NFIC;NFIC-CELF5|12|fusion;NFIC-CELF5|11|fusion;NFIC-CELF5|13|fusion;nc|ENSG00000141905|P08651-5|NFIC;nc|ENSG00000141905|P08651-3|NFIC;nc|ENSG00000141905|P08651-6|NFIC;NFIC-CELF5|14|fusion;chr19:3425177-3426952|110|12.55|0.17|6.2|+|2|NFIC,None|1	ENSG00000141905|ENST00000443272|NFIC	ENSG00000141905|ENST00000443272|NFIC	MULTI-MSMS	OvCa99_classI_Rep5	1	515.7750854492188	2	515.774396	1029.53424	-0.38611	-0.00019914	0.088839	4.5821E-05	-0.29727	-0.00015332	515.774306165704	65.213	0.7493	65.213	64.916	65.665	0					59	18	5	0	0	0	0.34132	1	5964	5964		58.23	7.0372	1	7705400			45056	4945	37287	37310	48534	48534					0.02065428998139396
QEDSNGCI	8	Unmodified	_QEDSNGCI_					0	0	0		ENSG00000160808|ENST00000292327|MYL3;nc|ENSG00000168530|P05976-2|MYL1;ENSG00000168530|ENST00000352451|MYL1	ENSG00000160808|ENST00000292327|MYL3	ENSG00000160808|ENST00000292327|MYL3	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1719665527344	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.74229	1	1625	1625		30.504	2.2494	1	60065			45057	6096	37288	37311	48535	48535					-0.10924467452787212
QEEACVLIS	9	Unmodified	_QEEACVLIS_					0	0	0			REV__ENST00000434206.1_1_3:43020805-43095327:+|nuORF	REV__ENST00000434206.1_1_3:43020805-43095327:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	496.24481201171875	2	496.241875	990.469197	-0.94661	-0.00046975	2.624	0.0013022	1.6774	0.00083241	496.2434009291543	37.368	0.64404	37.368	36.977	37.621	0					19	13	2	0	0	0	0.42676	1	2024	2024		49.442	7.0454	1	492580	+		45058	19925	37289	37312	48536	48536					-0.02641888799348635
QEEAMKAEKW	10	Unmodified	_QEEAMKAEKW_					0	0	0		ENSG00000095066|ENST00000397668|HOOK2;nc|ENSG00000095066|Q96ED9-2|HOOK2	ENSG00000095066|ENST00000397668|HOOK2	ENSG00000095066|ENST00000397668|HOOK2	MULTI-MSMS	OvCa9_classI_Rep3	3	625.2942504882812	2	625.297713	1248.58087	-4.4959	-0.0028113	-1.6794	-0.0010501	-6.1753	-0.0038614	625.2965199042848	153.36	0.97864	152.39	152.03	153.01	-0.97301					42	20	3	0	0	0	0.70834	1	13119	13119		24.519	0	1	67090			45059	1920	37290	37313	48537	48537					-0.03347454442223352
QEEEMKIQI	9	Oxidation (M)	_QEEEM(Oxidation (M))KIQI_		QEEEM(1)KIQI		QEEEM(140)KIQI	0	0	1			REV__ENST00000446818.6_2_3:17469969-17549971:-|nuORF	REV__ENST00000446818.6_2_3:17469969-17549971:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	582.2840576171875	2	582.284271	1162.55399	-1.0505	-0.00061168	-2.3554	-0.0013715	-3.4059	-0.0019832	582.2828314068574	59.579	1.141	59.579	59.377	60.518	0					63	28	4	0	0	0	0.029147	2	5161	5130;5161		136.27	11.669	1	6552300	+		45060	25908	37291	37314	48538;48539	48539		583			-0.02078563053396465
QEEFKQEKL	9	Unmodified	_QEEFKQEKL_					0	0	0		ENSG00000154781|ENST00000383794|CCDC174;ENST00000465759.1_1_3:14693292-14708492:+|nuORF;ENST00000463438.5_1_3:14693292-14703332:+|nuORF	ENSG00000154781|ENST00000383794|CCDC174	ENSG00000154781|ENST00000383794|CCDC174	MULTI-MSMS	OvCa99_classI_Rep5	1	589.8082275390625	2	589.806228	1177.5979	-0.8271	-0.00048783	-0.0057691	-3.4027E-06	-0.83286	-0.00049123	589.8061427428843	66.065	0.86899	66.065	65.831	66.7	0					75	21	6	0	0	0	0.094616	1	6120	6120		98.629	2.4389	1	21680000			45061	5754	37292	37315	48540	48540					0.016207894352419316
QEEGQPLKL	9	Unmodified	_QEEGQPLKL_					0	0	0		nc|ENSG00000108588|Q96A33-2|CCDC47;ENSG00000108588|ENST00000225726|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	nc|ENSG00000108588|Q96A33-2|CCDC47	MULTI-MSMS	OvCa99_classI_Rep5	1	521.2828369140625	2	521.282389	1040.55022	-0.54068	-0.00028185	0.76049	0.00039643	0.21981	0.00011458	521.2826360304663	68.88	0.86636	68.88	68.523	69.39	0					35	20	2	0	0	0	0.014964	1	6528	6528		153.04	16.768	1	3215400			45062	2664	37293	37316	48541	48541					0.03157135235028363
QEEIKSSKIIS	11	Unmodified	_QEEIKSSKIIS_					0	0	0		tr|A0A7D6ZQI4|A0A7D6ZQI4_9CLOTCobW/HypB/UreGnucleotide-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00450PE=4SV=1	tr|A0A7D6ZQI4|A0A7D6ZQI4_9CLOTCobW/HypB/UreGnucleotide-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00450PE=4SV=1	tr|A0A7D6ZQI4|A0A7D6ZQI4_9CLOTCobW/HypB/UreGnucleotide-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00450PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	632.29931640625	2	631.353542	1260.69253	2.3521	0.001485	2.4616	0.0015541	4.8137	0.0030391	631.3554958638476	117.79	1.3537	117.79	117.23	118.58	0					45	28	3	0	0	0	0.025528	1	13597	13597		35.152	4.8343	1	215690			45063	35702	37294	37317	48542	48542					0.07261303186578516
QEEIQRLRE	9	Unmodified	_QEEIQRLRE_					0	0	0			REV__ENSG00000079387|ENST00000549518|SENP1	REV__ENSG00000079387|ENST00000549518|SENP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	601.7907104492188	2	600.820201	1199.62585	1.7262	0.0010372	-3.3529	-0.0020145	-1.6267	-0.00097733	601.3193773432745	130.35	0.14174	130.35	130.25	130.39	0					4	2	2	0	0	0	0.027425	1	15126	15126		54.722	3.5297	1	21249	+		45064	17042	37295	37318	48543	48543					0.03402112415301417
QEEKKTDL	8	Unmodified	_QEEKKTDL_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.7934875488281	2	495.758746	989.50294	-0.3599	-0.00017842	-1.7982	-0.00089148	-2.1581	-0.0010699	495.7587388586211	52.185	0.91074	48.977	48.692	49.602	-3.208					48	17	4	0	0	0	0.028476	1	3130	3130		32.812	14.488	1	54676	+		45065	20262	37296	37319	48544	48544					0.007768559640567219
QEEKMQEQEE	10	Unmodified	_QEEKMQEQEE_					0	0	0		nc|ENSG00000273756|P0DX02|GOLGA6L26;ENSG00000273976|ENST00000614055|GOLGA6L1;ENSG00000277322|ENST00000619213|GOLGA6L6;ENST00000567652.1_3_15:28798864-28806522:+|nuORF;nc|ENSG00000227717|P0DX01|GOLGA6L25;nc|ENSG00000237850|P0DX00|GOLGA6L24;ENSG00000277865|ENST00000622895|GOLGA6L22	nc|ENSG00000273756|P0DX02|GOLGA6L26	nc|ENSG00000273756|P0DX02|GOLGA6L26	MULTI-SECPEP	OvCa99_classI_Rep5	1	436.7646789550781	3	436.518847	1306.53471	0.19371	8.4559E-05	4.2429	0.0018521	4.4366	0.0019367	436.8550984163647	59.693	0.424	59.693	59.573	59.997	0					13	10	2	0	0	0	0.027115	1	5186	5186		18.531	0	1	252910			45066	9560	37297	37320	48545	48545					-0.10629564134933389
QEEKPEPVL	9	Unmodified	_QEEKPEPVL_					0	0	0		G3BP1|p.K376Nfs*33|1|0.04|ENSG00000145907|chr5:151800798-151800798|G/-|frameshift_variant;ENSG00000145907|ENST00000356245|G3BP1	G3BP1|p.K376Nfs*33|1|0.04|ENSG00000145907|chr5:151800798-151800798|G/-|frameshift_variant	G3BP1|p.K376Nfs*33|1|0.04|ENSG00000145907|chr5:151800798-151800798|G/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	534.7841796875	2	534.782222	1067.54989	0.058635	3.1357E-05	-0.20773	-0.00011109	-0.1491	-7.9734E-05	534.7821368339627	62.21	1.2712	62.21	61.869	63.14	0					71	30	5	0	0	0	0.2422	1	5536	5536		69.628	0	1	29220000			45067	5252	37298	37321	48546	48546					0.01881715515196447
QEEKPLKL	8	Unmodified	_QEEKPLKL_					0	0	0		nc|ENSG00000113749|P25021|HRH2;nc|ENSG00000113749|P25021-2|HRH2;ENSG00000113749|ENST00000636584|HRH2	nc|ENSG00000113749|P25021|HRH2	nc|ENSG00000113749|P25021|HRH2	MULTI-MSMS	OvCa99_classI_Rep5	1	492.79132080078125	2	492.78985	983.565146	-0.5144	-0.00025349	0.41558	0.00020479	-0.098824	-4.8699E-05	492.78994956053793	56.03	0.77425	56.03	55.764	56.538	0					40	18	3	0	0	0	0.21559	1	4613	4613		122.18	6.6819	1	9351100			45068	2992	37299	37322	48547	48547					0.07270627103048355
QEELIVHDE	9	Unmodified	_QEELIVHDE_					0	0	0			REV__ENSG00000056586|ENST00000357244|RC3H2	REV__ENSG00000056586|ENST00000357244|RC3H2	MULTI-MSMS	OvCa99_classI_Rep5	1	556.269287109375	2	556.266936	1110.51932	0.34581	0.00019236	0.72924	0.00040565	1.0751	0.00059802	556.267333359324	63.59	2.4993	63.59	62.294	64.793	0					76	61	2	0	0	0	0.40667	1	5744	5744		51.335	1.8939	1	1305500	+		45069	16717	37300	37323	48548	48548					-0.03152062869844485
QEELLQEEL	9	Unmodified	_QEELLQEEL_					0	0	0		nc|ENSG00000160208|Q14684-2|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	MULTI-MSMS	OvCa99_classI_Rep5	1	565.781494140625	2	565.782418	1129.55028	-0.44168	-0.00024989	-0.36738	-0.00020786	-0.80906	-0.00045775	565.782159478059	39.862	1.5606	39.862	39.589	41.149	0					79	34	4	0	0	0	0.014964	1	2370	2370		153.04	18.225	1	9131800			45070	15128	37301	37324	48549	48549					-0.009309095556091052
QEELQIKLE	9	Unmodified	_QEELQIKLE_					0	0	0			REV__nc|ENSG00000284862|Q9UFE4|CCDC39	REV__nc|ENSG00000284862|Q9UFE4|CCDC39	MULTI-SECPEP	OvCa9_classI_Rep4_	4	566.2971801757812	2	565.308603	1128.60265	0.18764	0.00010607	-2.4696	-0.0013961	-2.2819	-0.00129	565.3070735253891	100.84	1.732	98.573	97.825	99.557	-2.2665					59	34	3	0	0	0	0.027411	1	9056	9056		70.816	12.586	1	239580	+		45071	29202	37302	37325	48550	48550					0.04349673578008151
QEELTDEKL	9	Unmodified	_QEELTDEKL_					0	0	0		ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	ENSG00000114656|ENST00000645291|CFAP92	MULTI-MSMS	OvCa99_classI_Rep5	1	552.7742309570312	2	552.774593	1103.53463	-0.66768	-0.00036908	0.36349	0.00020093	-0.3042	-0.00016815	552.7747004973714	35.128	0.47196	35.128	34.957	35.429	0					23	9	4	0	0	0	0.061524	1	1753	1753		112.11	18.964	1	429480			45072	3032	37303	37326	48551	48551					-0.012991960726594698
QEELVKISL	9	Unmodified	_QEELVKISL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;COL6A3|p.T1393Cfs*9|1|0.09|ENSG00000163359|chr2:237371828-237371840|GCTCCCGGAAGGT/-|frameshift_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	529.8098754882812	2	529.808239	1057.60193	-0.58449	-0.00030967	-1.5012	-0.00079536	-2.0857	-0.001105	529.807658457611	104.6	3.6666	104.6	104.15	107.82	0					240	84	6	0	0	0	0.011767	4	11764	11704;11734;11764;11813		163.15	10.859	1	177490000			45073	6293	37304	37327	48552;48553;48554;48555	48554					0.07542878928961727
QEERLLAN	8	Unmodified	_QEERLLAN_					0	0	0			REV__nc|ENSG00000164989|Q6TFL3-3|CCDC171	REV__nc|ENSG00000164989|Q6TFL3-3|CCDC171	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.2514953613281	2	486.759081	971.503609	-0.50948	-0.000248	2.0162	0.00098139	1.5067	0.0007334	486.75981705214434	38.803	0.79959	38.803	38.576	39.376	0					38	17	4	0	0	0	0.028476	1	2298	2298		25.45	0	1	487630	+		45074	21047	37305	37328	48556	48556					0.016716954037633514
QEERTCLME	9	Unmodified	_QEERTCLME_					0	0	0		ENST00000272321.11_2_2:63815801-63815882:-|nuORF	ENST00000272321.11_2_2:63815801-63815882:-|nuORF	ENST00000272321.11_2_2:63815801-63815882:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	569.7848510742188	2	569.746998	1137.47944	-0.98572	-0.00056161	-0.87344	-0.00049764	-1.8592	-0.0010593	569.7465123829808	90.845	1.0654	88.764	88.361	89.427	-2.0805					33	20	2	0	0	0	0.027455	1	5646	5646		51.335	18.523	1	65547			45075	9996	37306	37329	48557	48557					-0.08379649136441003
QEERTCLME	9	Unmodified	_QEERTCLME_					0	0	0		ENST00000272321.11_2_2:63815801-63815882:-|nuORF	ENST00000272321.11_2_2:63815801-63815882:-|nuORF	ENST00000272321.11_2_2:63815801-63815882:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	569.746998	1137.47944	-0.18313	-0.00010434	-2.1703	-0.0012365	-2.3534	-0.0013409	569.7456418082664	91.429	0.70648	88.887	88.708	89.415	-2.5425	0.061164	-0.00056167	NaN	19.997	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55603			45076	9996	37306	37329							-0.08379649136441003
QEESLRTYL	9	Unmodified	_QEESLRTYL_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	OvCa99_classI_Rep5	1	569.7916870117188	2	569.790578	1137.5666	1.887	0.0010752	0.49599	0.00028261	2.3829	0.0013578	569.7907185787878	83.847	0.71577	83.847	83.588	84.303	0					43	16	4	0	0	0	0.3076	1	8725	8725		62.107	14.45	1	4194900			45077	8130	37307	37330	48558	48558					0.0033221640117062634
QEESQAQNK	9	Unmodified	_QEESQAQNK_					0	0	0			REV__ENST00000571006.5_1_16:46521999-46540142:-|nuORF	REV__ENST00000571006.5_1_16:46521999-46540142:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	531.2471923828125	2	531.246535	1060.47852	-0.79024	-0.00041981	0.58901	0.00031291	-0.20124	-0.00010691	531.2466862885512	42.05	0.43282	42.05	41.853	42.286	0					19	9	3	0	0	0	0.35444	1	2684	2684		56.721	10.749	1	234060	+		45078	27699	37308	37331	48559	48559					-0.049304041894629336
QEESQAQNK	9	Unmodified	_QEESQAQNK_					0	0	0			REV__ENST00000571006.5_1_16:46521999-46540142:-|nuORF	REV__ENST00000571006.5_1_16:46521999-46540142:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	531.246535	1060.47852	-0.79024	-0.00041981	0.58901	0.00031291	-0.20124	-0.00010691	531.2466862885512	42.05	0.43282	42.05	41.853	42.286	0	0	0	NaN	56.721	19	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234060	+		45079	27699	37308	37331							-0.049304041894629336
QEETGAKISVL	11	Unmodified	_QEETGAKISVL_					0	0	0		KHDRBS1|p.A312Gfs*56|1|0.06|ENSG00000121774|chr1:32037857-32037858|-/G|frameshift_variant;ENST00000307714.12_1_1:32479575-32503673:+|nuORF;nc|ENSG00000121774|Q07666-2|KHDRBS1;ENSG00000121774|ENST00000327300|KHDRBS1	KHDRBS1|p.A312Gfs*56|1|0.06|ENSG00000121774|chr1:32037857-32037858|-/G|frameshift_variant	KHDRBS1|p.A312Gfs*56|1|0.06|ENSG00000121774|chr1:32037857-32037858|-/G|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	587.8207397460938	2	587.819335	1173.62412	1.7038	0.0010016	0.22827	0.00013418	1.9321	0.0011357	587.8194039627401	77.898	1.2817	77.898	77.588	78.869	0					53	30	3	0	0	0	0.044802	2	7888	7858;7888		145.46	46.879	1	15557000			45080	3499	37309	37332	48560;48561	48561					0.04425058606716448
QEEVTRGP	8	Unmodified	_QEEVTRGP_					0	0	0		nc|ENSG00000176371|Q7Z7L9-4|ZSCAN2;nc|ENSG00000176371|Q7Z7L9-3|ZSCAN2;ENSG00000176371|ENST00000546148|ZSCAN2	nc|ENSG00000176371|Q7Z7L9-4|ZSCAN2	nc|ENSG00000176371|Q7Z7L9-4|ZSCAN2	MULTI-MSMS	OvCa99_classI_Rep5	1	458.2293701171875	2	458.230156	914.445759	-0.84888	-0.00038898	-0.44809	-0.00020533	-1.297	-0.00059431	458.2298076081388	36.563	0.62622	36.563	36.397	37.023	0					27	13	4	0	0	0	0.58851	1	1940	1940		66.429	4.3219	1	582160			45081	7600	37310	37333	48562	48562					-0.0148856652166387
QEFCPTILQ	9	Unmodified	_QEFCPTILQ_					0	0	0		SLC39A14-PPP3CC|3|fusion;SLC39A14-PPP3CC|1|fusion;SLC39A14-PPP3CC|2|fusion;nc|ENSG00000104635|Q15043-2|SLC39A14;ENSG00000104635|ENST00000381237|SLC39A14;SLC39A14-PPP3CC|6|fusion;SLC39A14-PPP3CC|4|fusion;SLC39A14-PPP3CC|5|fusion;nc|ENSG00000104635|Q15043-3|SLC39A14	SLC39A14-PPP3CC|3|fusion	SLC39A14-PPP3CC|3|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	539.7664184570312	2	539.765517	1077.51648	0.07659	4.1341E-05	2.2937	0.0012381	2.3703	0.0012794	539.7663029678746	31.636	0.59585	31.636	31.46	32.055	0					32	11	4	0	0	0	0.2077	1	1320	1320		75.043	3.1658	1	237900			45082	32832	37311	37334	48563	48563					-0.019176095283455652
QEFLERIHL	9	Unmodified	_QEFLERIHL_					0	0	0		nc|ENSG00000155307|Q9NSI8-2|SAMSN1;ENSG00000155307|ENST00000400566|SAMSN1;nc|ENSG00000155307|Q9NSI8-3|SAMSN1	nc|ENSG00000155307|Q9NSI8-2|SAMSN1	nc|ENSG00000155307|Q9NSI8-2|SAMSN1	MULTI-MSMS	OvCa99_classI_Rep5	1	592.825927734375	2	592.824755	1183.63496	3.1999	0.001897	-0.068698	-4.0726E-05	3.1312	0.0018563	592.8239751737083	97.859	1.0675	97.859	97.18	98.247	0					37	24	2	0	0	0	0.2784	1	10748	10748		65.465	9.0316	1	1079700			45083	5778	37312	37335	48564	48564					0.05048505771674172
QEFSPPEQVT	10	Unmodified	_QEFSPPEQVT_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa9_classI_Rep4_	4	581.273681640625	2	581.274761	1160.53497	-1.5011	-0.00087254	-2.0316	-0.0011809	-3.5327	-0.0020535	581.2734310108768	124.3	1.1327	122.91	122.62	123.75	-1.3908					47	21	3	0	0	0	0.74374	1	11785	11785		25.574	1.3713	1	138040	+		45084	28942;32737	37313	37336	48565	48565					-0.03887776352826222
QEGHYLKV	8	Unmodified	_QEGHYLKV_					0	0	0			REV__tr|A0A7D6VPK3|A0A7D6VPK3_9CLOTTyrosine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=tyrSPE=3SV=1	REV__tr|A0A7D6VPK3|A0A7D6VPK3_9CLOTTyrosine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=tyrSPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.25897216796875	2	487.258717	972.50288	-0.95267	-0.0004642	1.4016	0.00068294	0.44892	0.00021874	487.2591363006749	43.499	0.42706	43.499	43.353	43.78	0					15	9	2	0	0	0	0.028476	1	2866	2866		35.618	0	1	135280	+		45085	31254	37314	37337	48566	48566					0.015529007547229412
QEGIVMHVLQ	10	Unmodified	_QEGIVMHVLQ_					0	0	0			REV__tr|A0A7D6VS11|A0A7D6VS11_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21080PE=4SV=1	REV__tr|A0A7D6VS11|A0A7D6VS11_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21080PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	577.3081665039062	2	577.305341	1152.59613	-0.99112	-0.00057218	4.1433	0.002392	3.1522	0.0018198	577.307548567038	39.862	0.96175	39.862	39.332	40.294	0					34	21	2	0	0	0	0.64697	1	2376	2376		36.447	4.8125	1	786300	+		45086	31460	37315	37338	48567	48567					0.025934571456446065
QEGKHVIGL	9	Unmodified	_QEGKHVIGL_					0	0	0		ENSG00000149591|ENST00000392951|TAGLN	ENSG00000149591|ENST00000392951|TAGLN	ENSG00000149591|ENST00000392951|TAGLN	MULTI-MSMS	OvCa99_classI_Rep5	1	490.78076171875	2	490.779816	979.545079	-1.0227	-0.00050194	-0.023578	-1.1571E-05	-1.0463	-0.00051351	490.77984330918713	49.966	2.5345	49.966	49.679	52.214	0					117	58	4	0	0	0	0.29717	1	3772	3772		63.306	2.3343	1	38266000			45087	5478	37316	37339	48568	48568					0.054488761630864246
QEGKNVIGL	9	Unmodified	_QEGKNVIGL_					0	0	0		ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159888592-159888742:-|nuORF	ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-MSMS	OvCa99_classI_Rep5	1	479.2724609375	2	479.271824	956.529095	-0.87159	-0.00041773	0.88806	0.00042562	0.016474	7.8955E-06	479.2720728270684	69.85	0.73617	69.85	69.591	70.328	0					44	17	4	0	0	0	0.21395	1	6680	6680		73.975	8.1716	1	4739600			45088	5969	37317	37340	48569	48569					0.04909169926179402
QEGLRPSRR	9	Unmodified	_QEGLRPSRR_					0	0	0		ENST00000597960.7_3_19:18642666-18642966:-|nuORF	ENST00000597960.7_3_19:18642666-18642966:-|nuORF	ENST00000597960.7_3_19:18642666-18642966:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	549.8312377929688	2	549.809971	1097.60539	-0.1729	-9.5061E-05	-0.18551	-0.000102	-0.35841	-0.00019706	550.3123072522154	71.784	0.24804	69.182	68.982	69.23	-2.6023					5	4	2	0	0	0	0.027462	1	3373	3373		37.812	17.815	1	5476.1			45089	14193	37318	37341	48570	48570					0.06048986546170454
QEGPAQKE	8	Unmodified	_QEGPAQKE_					0	0	0		nc|ENSG00000084093|Q13127-4|REST;ENSG00000084093|ENST00000309042|REST	nc|ENSG00000084093|Q13127-4|REST	nc|ENSG00000084093|Q13127-4|REST	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.2442321777344	2	443.716882	885.41921	0.61687	0.00027371	-3.2902	-0.0014599	-2.6733	-0.0011862	443.71527522947224	59.905	3.8435	59.905	58.973	62.816	0					129	94	2	0	0	0	0.028476	1	5070	5070		64.207	11.271	1	806810			45090	1710	37319	37342	48571	48571					-0.028082554129923665
QEHLQLQNL	9	Unmodified	_QEHLQLQNL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa9_classI_Rep2	2	561.7970581054688	2	561.798737	1121.58292	-0.11321	-6.3599E-05	-0.36331	-0.00020411	-0.47651	-0.0002677	561.7984596868567	83.597	1.7572	81.998	81.64	83.397	-1.5988					89	34	5	0	0	0	0.023304	3	7159	7159;7164;7175		143.11	9.2942	1	1100100			45091	4906	37320	37343	48572;48573;48574	48572					0.026993423579142473
QEHLQLQNL	9	Unmodified	_QEHLQLQNL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa9_classI_Rep3	3	561.800048828125	2	561.798737	1121.58292	-1.346	-0.0007562	0.54203	0.00030451	-0.804	-0.00045169	561.7990663680788	84.167	1.9347	81.906	81.611	83.545	-2.261					102	39	5	0	0	0	0.023304	1	4866	4866		143.11	9.2942	1	1927700			45092	4906	37320	37343	48575	48575					0.026993423579142473
QEHLQLQNL	9	Unmodified	_QEHLQLQNL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.7993774414062	2	561.798737	1121.58292	2.2896	0.0012863	-2.5491	-0.0014321	-0.25952	-0.0001458	561.7971902300202	84.649	2.1778	81.986	81.549	83.726	-2.6629					114	44	5	0	0	0	0.030815	1	7100	7100		134.81	14.19	1	1628700			45093	4906	37320	37343	48576	48576					0.026993423579142473
QEHQLGNNTL	10	Unmodified	_QEHQLGNNTL_					0	0	0		ENSG00000104901|ENST00000221498|DKKL1	ENSG00000104901|ENST00000221498|DKKL1	ENSG00000104901|ENST00000221498|DKKL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.2918090820312	2	577.283451	1152.55235	1.1524	0.00066527	-2.883	-0.0016643	-1.7305	-0.00099901	577.7828775976421	98.466	0.60439	98.466	98.079	98.683	0					15	13	2	0	0	0	0.026942	1	10817	10817		47.96	11.513	1	172890			45094	2405	37321	37344	48577	48577					-0.017824360271333717
QEIAAVLVE	9	Unmodified	_QEIAAVLVE_					0	0	0		tr|A0A553SG41|A0A553SG41_NIACIGlutamate-1-semialdehyde2,1-aminomutaseOS=NialliacirculansOX=1397GN=hemLPE=3SV=1	tr|A0A553SG41|A0A553SG41_NIACIGlutamate-1-semialdehyde2,1-aminomutaseOS=NialliacirculansOX=1397GN=hemLPE=3SV=1	tr|A0A553SG41|A0A553SG41_NIACIGlutamate-1-semialdehyde2,1-aminomutaseOS=NialliacirculansOX=1397GN=hemLPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.2387390136719	2	486.274032	970.533512	-0.27817	-0.00013527	0.66329	0.00032254	0.38512	0.00018727	486.2740574582155	51.488	0.37866	51.488	51.248	51.627	0					19	8	3	0	0	0	0.027411	1	3966	3966		54.776	0	1	1303600			45095	33115	37322	37345	48578	48578					0.0470663434908829
QEIATYRSLL	10	Unmodified	_QEIATYRSLL_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;CON__P19001;ENSG00000171346|ENST00000254043|KRT15;CON__P19012;CON__P08730-1;nc|ENSG00000171401|P13646-3|KRT13;CON__ENSEMBL:ENSP00000377550;CON__P13646-1;ENSG00000171401|ENST00000246635|KRT13;ENST00000557173.1_1_12:95228580-95228931:+|nuORF;ENST00000474031.5_1_17:39671722-39674667:-|nuORF;nc|ENSG00000171346|P19012-2|KRT15;ENST00000468313.5_1_17:39657932-39661743:-|nuORF	CON__P08727	CON__P08727	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.328857421875	2	597.32987	1192.64519	-0.18277	-0.00010917	-0.13295	-7.9414E-05	-0.31571	-0.00018859	597.3296788657808	99.394	1.2286	97.068	96.795	98.024	-2.3253					61	23	4	0	0	0	0.11648	1	8861	8861		109.44	32.121	1	271210		+	45096	625	37323	37346	48579	48579					0.056570687062503566
QEIATYRSLL	10	Unmodified	_QEIATYRSLL_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;CON__P19001;ENSG00000171346|ENST00000254043|KRT15;CON__P19012;CON__P08730-1;nc|ENSG00000171401|P13646-3|KRT13;CON__ENSEMBL:ENSP00000377550;CON__P13646-1;ENSG00000171401|ENST00000246635|KRT13;ENST00000557173.1_1_12:95228580-95228931:+|nuORF;ENST00000474031.5_1_17:39671722-39674667:-|nuORF;nc|ENSG00000171346|P19012-2|KRT15;ENST00000468313.5_1_17:39657932-39661743:-|nuORF	CON__P08727	CON__P08727	MULTI-MATCH	OvCa9_classI_Rep2	2		2	597.32987	1192.64519	-0.72829	-0.00043503	0.13048	7.7939E-05	-0.59781	-0.00035709	597.329809550684	98.004	1.3305	97.111	96.826	98.156	-0.89305	-0.014248	0.00082187	NaN	109.44	66	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	251620		+	45097	625	37323	37346							0.056570687062503566
QEIATYRSLL	10	Unmodified	_QEIATYRSLL_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;CON__P19001;ENSG00000171346|ENST00000254043|KRT15;CON__P19012;CON__P08730-1;nc|ENSG00000171401|P13646-3|KRT13;CON__ENSEMBL:ENSP00000377550;CON__P13646-1;ENSG00000171401|ENST00000246635|KRT13;ENST00000557173.1_1_12:95228580-95228931:+|nuORF;ENST00000474031.5_1_17:39671722-39674667:-|nuORF;nc|ENSG00000171346|P19012-2|KRT15;ENST00000468313.5_1_17:39657932-39661743:-|nuORF	CON__P08727	CON__P08727	MULTI-MATCH	OvCa9_classI_Rep3	3		2	597.32987	1192.64519	0.91921	0.00054907	-1.2717	-0.0007596	-0.35245	-0.00021053	597.329088056576	98.882	1.2921	97.197	96.904	98.196	-1.685	0.071217	-0.00085321	NaN	109.44	59	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	317940		+	45098	625	37323	37346							0.056570687062503566
QEIDLQTFL	9	Unmodified	_QEIDLQTFL_					0	0	0		ENSG00000122870|ENST00000373886|BICC1	ENSG00000122870|ENST00000373886|BICC1	ENSG00000122870|ENST00000373886|BICC1	MULTI-MSMS	OvCa99_classI_Rep5	1	553.7921752929688	2	553.790047	1105.56554	1.4239	0.00078856	-1.0878	-0.00060242	0.33612	0.00018614	553.789049976619	149.41	0.4873	149.41	149.21	149.7	0					26	9	4	0	0	0	0.2422	1	17495	17495		69.628	0	1	176550			45099	3562	37324	37347	48580	48580					0.01698002032230761
QEIEDQKEI	9	Unmodified	_QEIEDQKEI_					0	0	0			REV__tr|A0A7D6VUA7|A0A7D6VUA7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06420PE=4SV=1	REV__tr|A0A7D6VUA7|A0A7D6VUA7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06420PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	566.2813720703125	2	566.280043	1130.54553	0.45364	0.00025689	-0.43956	-0.00024892	0.014075	7.9704E-06	566.2796715170327	63.575	0.63915	63.575	63.296	63.935	0					46	15	5	0	0	0	0.035142	1	5725	5725		131.03	5.2174	1	5256400	+		45100	31664	37325	37348	48581	48581					-0.014517936983793334
QEIEDQKEI	9	Unmodified	_QEIEDQKEI_					0	0	0			REV__tr|A0A7D6VUA7|A0A7D6VUA7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06420PE=4SV=1	REV__tr|A0A7D6VUA7|A0A7D6VUA7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06420PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	566.280043	1130.54553	0.45364	0.00025689	-0.43956	-0.00024892	0.014075	7.9704E-06	566.2796715170327	63.575	0.63915	63.575	63.296	63.935	0	0	0	NaN	131.03	46	15	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5256400	+		45101	31664	37325	37348							-0.014517936983793334
QEIIETQIKTL	11	Unmodified	_QEIIETQIKTL_					0	0	0			REV__nc|ENSG00000173230|Q14789|GOLGB1	REV__nc|ENSG00000173230|Q14789|GOLGB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	438.25360107421875	3	439.25377	1314.73948	0.5195	0.00022819	-1.9227	-0.00084455	-1.4032	-0.00061636	439.58729650851825	43.324	0.72284	43.324	43.014	43.737	0					36	16	3	0	0	0	0.025864	1	2809	2809		22.562	0	1	64773	+		45102	21758	37326	37349	48582	48582					0.094701627376935
QEIIKKLE	8	Unmodified	_QEIIKKLE_					0	0	0		ENSG00000118308|ENST00000556887|IRAG2;nc|ENSG00000118308|Q12912|IRAG2	ENSG00000118308|ENST00000556887|IRAG2	ENSG00000118308|ENST00000556887|IRAG2	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.806640625	2	500.8055	999.596446	-0.54965	-0.00027527	0.1048	5.2485E-05	-0.44485	-0.00022278	500.8053890007759	58.223	0.75021	54.878	54.596	55.347	-3.3449					42	14	4	0	0	0	0.42405	1	3832	3832		85.161	0	1	392820			45103	3301	37327	37350	48583	48583					0.09663200137129024
QEILESRVL	9	Unmodified	_QEILESRVL_					0	0	0			REV__ENSG00000137251|ENST00000259782|TINAG	REV__ENSG00000137251|ENST00000259782|TINAG	MULTI-MSMS	OvCa99_classI_Rep5	1	543.8093872070312	2	543.811313	1085.60807	0.12108	6.5846E-05	0.088059	4.7887E-05	0.20914	0.00011373	543.8112418149481	62.522	0.84573	62.522	62.294	63.14	0					50	20	4	0	0	0	0.056671	1	5563	5563		114.89	0	1	3469500	+		45104	19441	37328	37351	48584	48584					0.06869397160471635
QEIPFYKLWRE	11	Unmodified	_QEIPFYKLWRE_					0	0	0			REV__ENSG00000249853|ENST00000312719|HS3ST5	REV__ENSG00000249853|ENST00000312719|HS3ST5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	504.2797546386719	3	503.601393	1507.78235	-1.4245	-0.00071738	1.2688	0.00063896	-0.15572	-7.842E-05	503.6019784995849	50.903	0.65783	47.729	47.516	48.174	-3.1734					16	12	2	0	0	0	0.026033	1	2953	2953		17.167	0	1	49720	+		45105	23491	37329	37352	48585	48585					0.04876977585763598
QEIRVKLP	8	Unmodified	_QEIRVKLP_					0	0	0			REV__nc|ENSG00000133103|Q9Y2V7-2|COG6	REV__nc|ENSG00000133103|Q9Y2V7-2|COG6	MULTI-MSMS	OvCa9_classI_Rep2	2	491.8056335449219	2	491.805834	981.597115	-0.58237	-0.00028641	0.39596	0.00019474	-0.18641	-9.1676E-05	491.8059066811213	50.582	1.7337	47.788	47.331	49.065	-2.794					87	34	4	0	0	0	0.65582	1	3287	3287		52.299	0.96372	1	434780	+		45106	19125	37330	37353	48586	48586					0.10558039576847023
QEITKQLR	8	Unmodified	_QEITKQLR_					0	0	0		nc|ENSG00000054523|O60333-3|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.64263916015625	2	508.298373	1014.58219	-0.36509	-0.00018558	-0.65782	-0.00033437	-1.0229	-0.00051995	508.29772785247803	29.523	0.24968	29.523	29.387	29.636	0					6	4	2	0	0	0	0.028476	1	1063	1063		23.042	0	1	14586			45107	14875	37331	37354	48587	48587					0.07548547708847764
QEIVHVRPKY	10	Unmodified	_QEIVHVRPKY_					0	0	0			REV__nc|ENSG00000122145|Q9Y458-2|TBX22	REV__nc|ENSG00000122145|Q9Y458-2|TBX22	MULTI-MSMS	OvCa9_classI_Rep4_	4	634.8593139648438	2	634.859129	1267.70371	0.91743	0.00058244	-2.2393	-0.0014216	-1.3218	-0.00083918	634.8576710032044	97.52	2.7566	95.141	94.708	97.465	-2.3786					143	53	5	0	0	0	0.37436	1	8660	8660		71.877	9.7701	1	2559000	+		45108	18580	37332	37355	48588	48588					0.08056170071358792
QEKEIQTLQ	9	Unmodified	_QEKEIQTLQ_					0	0	0		ENSG00000176714|ENST00000324364|CCDC121;nc|ENSG00000176714|Q6ZUS5-2|CCDC121	ENSG00000176714|ENST00000324364|CCDC121	ENSG00000176714|ENST00000324364|CCDC121	MULTI-MSMS	OvCa99_classI_Rep5	1	558.7998046875	2	558.798403	1115.58225	-0.20703	-0.00011569	-0.28856	-0.00016125	-0.49559	-0.00027693	558.798154782729	59.244	1.0306	59.244	58.696	59.726	0					52	26	5	0	0	0	0.0079674	1	5090	5090		199.89	30.239	1	6560300			45109	7624	37333	37356	48589	48589					0.029085029181942446
QEKEIQTLQ	9	Unmodified	_QEKEIQTLQ_					0	0	0		ENSG00000176714|ENST00000324364|CCDC121;nc|ENSG00000176714|Q6ZUS5-2|CCDC121	ENSG00000176714|ENST00000324364|CCDC121	ENSG00000176714|ENST00000324364|CCDC121	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	558.798403	1115.58225	0.67925	0.00037956	-3.5944	-0.0020085	-2.9151	-0.001629	559.2970980948685	62.418	0.19721	58.96	58.864	59.061	-3.4577	-0.14198	-0.003512	NaN	199.89	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22448			45110	7624	37333	37356							0.029085029181942446
QEKEKLKVD	9	Unmodified	_QEKEKLKVD_					0	0	0		tr|A0A553SQ53|A0A553SQ53_NIACIPDZdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20650PE=3SV=1	tr|A0A553SQ53|A0A553SQ53_NIACIPDZdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20650PE=3SV=1	tr|A0A553SQ53|A0A553SQ53_NIACIPDZdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20650PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.8174438476562	2	558.816596	1115.61864	0.090881	5.0786E-05	-0.054252	-3.0317E-05	0.036629	2.0469E-05	558.8161517620805	45.974	2.6143	42.901	42.613	45.228	-3.0724					111	50	3	0	0	0	0.049969	3	2377	2366;2377;2389		118.74	0	1	5957700			45111	34120	37334	37357	48590;48591;48592	48591					0.06545379814906482
QEKELYFRKK	10	Unmodified	_QEKELYFRKK_					0	0	0		ENST00000399201.5_1_21:37431190-37451630:-|nuORF	ENST00000399201.5_1_21:37431190-37451630:-|nuORF	ENST00000399201.5_1_21:37431190-37451630:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	456.9246826171875	3	456.925988	1367.75613	0.1988	9.0838E-05	-3.9752	-0.0018164	-3.7764	-0.0017255	456.92425145866184	31.584	1.3875	31.584	31.361	32.748	0					79	27	5	0	0	0	0.69928	1	1334	1334		30.569	2.9249	1	5482000			45112	11382	37335	37358	48593	48593					0.08696708414299792
QEKENDYY	8	Unmodified	_QEKENDYY_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3;DNAH3|p.T2544Ifs*7|1|0.16|ENSG00000158486|chr16:20985111-20985112|-/A|frameshift_variant;nc|ENSG00000158486|Q8TD57-3|DNAH3;DNAH3|p.L2088Pfs*41|1|0.69|ENSG00000158486|chr16:21000370-21000382|GGAAGGTGGAGAA/-|frameshift_variant;DNAH3|p.L917Ffs*10|1|0.04|ENSG00000158486|chr16:21086975-21086975|C/-|frameshift_variant;DNAH3|p.I708Mfs*22|1|0.08|ENSG00000158486|chr16:21106650-21106650|G/-|frameshift_variant;nc|ENSG00000158486|Q8TD57-2|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.7714233398438	2	544.730186	1087.44582	-1.4871	-0.00081005	3.5632	0.001941	2.0761	0.0011309	544.7317889621845	42.677	0.31467	39.697	39.618	39.933	-2.9804					7	5	2	0	0	0	0.028476	1	2005	2005		26.796	0	1	22723			45113	5956	37336	37359	48594	48594					-0.09440611312334113
QEKENKVAAA	10	Unmodified	_QEKENKVAAA_					0	0	0			REV__RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;REV__ENST00000559070.5_1_17:78261823-78310301:+|nuORF;REV__nc|ENSG00000173821|Q63HN8-5|RNF213	REV__RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.311279296875	2	544.290745	1086.56694	-0.64115	-0.00034897	-0.76334	-0.00041548	-1.4045	-0.00076445	544.2904162713497	50.683	0.57481	50.683	50.332	50.907	0					26	12	3	0	0	0	0.027363	1	3857	3857		95.815	0	1	324280	+		45114	21802;27592;29010	37337	37360	48595	48595					0.027116361209891693
QEKEQIKTL	9	Unmodified	_QEKEQIKTL_					0	0	0		CON__H-INV:HIT000292931;ENST00000472924.1_1_3:160285772-160286174:+|nuORF;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;ENST00000550170.5_1_12:53294858-53298765:-|nuORF	CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8	ENSG00000170421|ENST00000692008|KRT8	MULTI-MSMS	OvCa9_classI_Rep2	2	558.8165893554688	2	558.816596	1115.61864	0.30325	0.00016946	0.12276	6.86E-05	0.42601	0.00023806	558.8161111583237	45.682	2.04	42.972	42.697	44.737	-2.7097					67	40	2	0	0	0	0.049969	2	2673	2673;2685		118.74	0	1	1772600		+	45115	622;610	37338	37361	48596;48597	48596					0.0654537981492922
QEKEQIKTL	9	Unmodified	_QEKEQIKTL_					0	0	0		CON__H-INV:HIT000292931;ENST00000472924.1_1_3:160285772-160286174:+|nuORF;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000409686.2_1_9:102067468-102068890:+|nuORF;CON__Q9H552;ENST00000550170.5_1_12:53294858-53298765:-|nuORF	CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8	ENSG00000170421|ENST00000692008|KRT8	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.8167724609375	2	558.816596	1115.61864	0.090881	5.0786E-05	-0.054252	-3.0317E-05	0.036629	2.0469E-05	558.8161517620805	45.974	2.6143	42.901	42.613	45.228	-3.0724					111	50	3	0	0	0	0.049969	1	2413	2413		118.74	0	1	5957700		+	45116	622;610	37338	37361	48598	48598					0.0654537981492922
QEKERKGQ	8	Unmodified	_QEKERKGQ_					0	0	0			REV__ENST00000253401.10_1_X:62974200-62974368:-|nuORF	REV__ENST00000253401.10_1_X:62974200-62974368:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.7640075683594	2	501.76998	1001.52541	0.0029535	1.482E-06	0.54306	0.00027249	0.54601	0.00027397	501.76965480882626	31.596	0.49643	31.596	31.41	31.906	0					21	9	3	0	0	0	0.028476	1	1290	1290		31.53	0	1	159200	+		45117	23873	37339	37362	48599	48599					0.02470500152344357
QEKIRYARV	9	Unmodified	_QEKIRYARV_					0	0	0		ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	MULTI-SECPEP	OvCa9_classI_Rep4_	4	582.7994384765625	2	581.838197	1161.66184	-1.4405	-0.00083816	-0.46602	-0.00027115	-1.9066	-0.0011093	581.8382210976112	71.049	0.47813	67.592	67.347	67.825	-3.4563					14	9	2	0	0	0	0.027461	1	5392	5392		49.442	24.922	1	27877			45118	1373	37340	37363	48600	48600					0.0874761438283258
QEKIRYARV	9	Unmodified	_QEKIRYARV_					0	0	0		ENSG00000067248|ENST00000251636|DHX29;ENST00000504778.5_1_5:54552318-54579000:-|nuORF	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	MULTI-MATCH	OvCa9_classI_Rep3	3		2	581.838197	1161.66184	-0.57404	-0.000334	-1.7477	-0.0010169	-2.3217	-0.0013509	581.837270355296	70.216	0.49295	67.496	67.056	67.549	-2.7196	-0.048193	-0.00092934	NaN	90.37	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24800			45119	1373	37340	37363							0.0874761438283258
QEKKNPKKE	9	Unmodified	_QEKKNPKKE_					0	0	0			REV__ENSG00000116793|ENST00000369604|PHTF1	REV__ENSG00000116793|ENST00000369604|PHTF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.2671508789062	2	564.822212	1127.62987	-0.43467	-0.00024551	2.1815	0.0012321	1.7468	0.00098662	565.3251957369636	28.448	0.24903	28.448	28.24	28.489	0					6	4	2	0	0	0	0.027462	1	924	924		39.253	6.4404	1	124150	+		45120	18320	37341	37364	48601	48601					0.07116201909047959
QEKKRATRQLL	11	Unmodified	_QEKKRATRQLL_					0	0	0		nc|ENSG00000021762|Q9H0X9-3|OSBPL5;nc|ENSG00000021762|Q9H0X9-2|OSBPL5;OSBPL5|p.P786Sfs*56|1|0.44|ENSG00000021762|chr11:3090600-3090601|-/CT|frameshift_variant;ENSG00000021762|ENST00000263650|OSBPL5;ENST00000534491.5_1_11:3114755-3187956:-|nuORF;ENST00000465323.1_1_11:3143079-3150378:-|nuORF;ENST00000477622.1_1_11:3143079-3147843:-|nuORF	nc|ENSG00000021762|Q9H0X9-3|OSBPL5	nc|ENSG00000021762|Q9H0X9-3|OSBPL5	MSMS	OvCa9_classI_Rep4_	4	457.6072082519531	3	457.612404	1369.81538	NaN	NaN	NaN	NaN	NaN	NaN	NaN	157.86	1	156.32	155.82	156.82	-1.545								0	0	0	0.19474	1	15609	15609		19.263	0.73163	1				45121	1028	37342	37365	48602	48602					0.14526604428510836
QEKLLQLSAA	10	Unmodified	_QEKLLQLSAA_					0	0	0		ENSG00000111254|ENST00000228850|AKAP3	ENSG00000111254|ENST00000228850|AKAP3	ENSG00000111254|ENST00000228850|AKAP3	MULTI-MSMS	OvCa99_classI_Rep5	1	550.8192749023438	2	550.819138	1099.62372	-0.020968	-1.155E-05	-0.28283	-0.00015579	-0.3038	-0.00016734	550.8189017143605	46.391	0.96394	46.391	46.112	47.076	0					58	21	4	0	0	0	0.45822	1	3264	3264		60.118	3.3972	1	3531800			45122	2817	37343	37366	48603	48603					0.0778968367753805
QEKMKELSSKL	11	Oxidation (M)	_QEKM(Oxidation (M))KELSSKL_		QEKM(1)KELSSKL		QEKM(49)KELSSKL	0	0	1			REV__tr|A0A553SP75|A0A553SP75_NIACIYicCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25795PE=3SV=1	REV__tr|A0A553SP75|A0A553SP75_NIACIYicCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25795PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	446.24224853515625	3	446.242877	1335.7068	0.073488	3.2794E-05	-2.5555	-0.0011404	-2.482	-0.0011076	446.2417256988566	58.769	1.5942	55.377	54.802	56.396	-3.392					98	31	4	0	0	0	0.55686	1	3881	3881		48.602	11.002	1	536790	+		45123	30505	37344	37367	48604	48604		668			0.052376323432099525
QEKMQLNKL	9	Unmodified	_QEKMQLNKL_					0	0	0			REV__ENSG00000110711|ENST00000279146|AIP	REV__ENSG00000110711|ENST00000279146|AIP	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.3184204101562	2	566.313166	1130.61178	1.7525	0.00099245	3.8631	0.0021877	5.6156	0.0031802	566.3152146734717	35.965	0.99816	33.116	32.889	33.887	-2.849					40	19	4	0	0	0	0.40667	1	1199	1199		51.335	3.6781	1	133740	+		45124	17998	37345	37368	48605	48605					0.05169743662690962
QEKNPVLV	8	Unmodified	_QEKNPVLV_					0	0	0		nc|ENSG00000241553|P59998-2|ARPC4;ENST00000602338.1_1_3:9862204-9862426:+|nuORF;ENST00000496526.5_1_3:9862204-9870005:+|nuORF;ENST00000427220.5_1_3:9860474-9876502:+|nuORF;nc|ENSG00000214021|Q9Y4R7|TTLL3;ENSG00000214021|ENST00000685419|TTLL3	nc|ENSG00000241553|P59998-2|ARPC4	nc|ENSG00000241553|P59998-2|ARPC4	MULTI-MSMS	OvCa99_classI_Rep5	1	463.7698059082031	2	463.768917	925.523281	-0.37163	-0.00017235	-0.098182	-4.5534E-05	-0.46981	-0.00021788	463.768784868781	54.386	1.5907	54.386	53.969	55.559	0					82	37	4	0	0	0	0.36941	2	4374	4374;4396		94.006	3.2298	1	8289500			45125	15339	37346	37369	48606;48607	48606					0.05754071414514783
QEKNPVLV	8	Unmodified	_QEKNPVLV_					0	0	0		nc|ENSG00000241553|P59998-2|ARPC4;ENST00000602338.1_1_3:9862204-9862426:+|nuORF;ENST00000496526.5_1_3:9862204-9870005:+|nuORF;ENST00000427220.5_1_3:9860474-9876502:+|nuORF;nc|ENSG00000214021|Q9Y4R7|TTLL3;ENSG00000214021|ENST00000685419|TTLL3	nc|ENSG00000241553|P59998-2|ARPC4	nc|ENSG00000241553|P59998-2|ARPC4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	463.768917	925.523281	-0.77051	-0.00035734	1.0573	0.00049033	0.28676	0.00013299	463.76931756859824	57.14	1.4903	54.348	53.782	55.273	-2.7921	-0.019068	0.00044021	NaN	94.006	82	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95998			45126	15339	37346	37369							0.05754071414514783
QEKNVGPL	8	Unmodified	_QEKNVGPL_					0	0	0			REV__tr|A0A553SLA4|A0A553SLA4_NIACIHsp20/alphacrystallinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20260PE=3SV=1	REV__tr|A0A553SLA4|A0A553SLA4_NIACIHsp20/alphacrystallinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20260PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	442.8812255859375	2	442.745442	883.476331	0.79511	0.00035203	0.608	0.00026919	1.4031	0.00062122	442.74559337357226	43.233	0.63736	43.233	42.97	43.608	0					22	14	2	0	0	0	0.028476	1	2864	2864		33.516	0	1	194530	+		45127	30206	37347	37370	48608	48608					0.02993211863383749
QEKQPQII	8	Unmodified	_QEKQPQII_					0	0	0		CCDC87|p.E633Rfs*9|1|0.06|ENSG00000182791|chr11:66591120-66591120|T/-|frameshift_variant;CCDC87|p.H683Lfs*13|1|0.31|ENSG00000182791|chr11:66590950-66590968|GACCACAGTTGTTCCAGAT/-|frameshift_variant;ENSG00000182791|ENST00000333861|CCDC87	CCDC87|p.E633Rfs*9|1|0.06|ENSG00000182791|chr11:66591120-66591120|T/-|frameshift_variant	CCDC87|p.E633Rfs*9|1|0.06|ENSG00000182791|chr11:66591120-66591120|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	492.2808837890625	2	492.279649	982.544745	-0.56634	-0.0002788	-0.064209	-3.1609E-05	-0.63055	-0.00031041	492.2795043889367	48.607	0.91518	48.607	48.372	49.287	0					47	20	4	0	0	0	0.57734	1	3574	3574		68.787	4.5796	1	3332000			45128	197	37348	37371	48609	48609					0.05277456443241135
QEKREIKKE	9	Unmodified	_QEKREIKKE_					0	0	0			REV__nc|ENSG00000263155|P0CAP1-9|MYZAP	REV__nc|ENSG00000263155|P0CAP1-9|MYZAP	MULTI-MSMS	OvCa99_classI_Rep5	1	594.3408813476562	2	594.340769	1186.66699	0.047389	2.8165E-05	0.015884	9.4405E-06	0.063273	3.7606E-05	594.3406942027049	22.19	0.64333	22.19	22.017	22.66	0					39	15	4	0	0	0	0.38969	1	179	179		52.937	0	1	507300	+		45129	29185	37349	37372	48610	48610					0.08111873454799934
QEKRKIPA	8	Unmodified	_QEKRKIPA_					0	0	0		ENST00000493021.5_1_2:162567177-162757603:+|nuORF;nc|ENSG00000144290|Q6U841-2|SLC4A10;nc|ENSG00000144290|Q6U841-3|SLC4A10;ENSG00000144290|ENST00000446997|SLC4A10	ENST00000493021.5_1_2:162567177-162757603:+|nuORF	ENST00000493021.5_1_2:162567177-162757603:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.2718200683594	2	485.295633	968.576714	-0.4844	-0.00023508	-2.1323	-0.0010348	-2.6167	-0.0012699	485.294461675938	48.433	0.16306	48.433	48.292	48.455	0					5	3	2	0	0	0	0.028476	1	3545	3545		57.811	0	1	86128			45130	5140	37350	37373	48611	48611					0.09116868917033116
QEKSQRRR	8	Unmodified	_QEKSQRRR_					0	0	0			REV__nc|ENSG00000138640|O94988-6|FAM13A	REV__nc|ENSG00000138640|O94988-6|FAM13A	MULTI-MSMS	OvCa99_classI_Rep5	1	544.311279296875	2	544.307595	1086.60064	-0.65483	-0.00035643	2.8224	0.0015363	2.1676	0.0011798	544.3091062340202	50.647	0.52872	50.647	50.421	50.949	0					35	11	4	0	0	0	0.40148	1	3857	3857		87.754	0.057861	1	1302800	+		45131	19550	37351	37374	48612	48612					0.060801024034162765
QEKSQRRR	8	Unmodified	_QEKSQRRR_					0	0	0			REV__nc|ENSG00000138640|O94988-6|FAM13A	REV__nc|ENSG00000138640|O94988-6|FAM13A	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	544.307595	1086.60064	-0.65483	-0.00035643	2.8224	0.0015363	2.1676	0.0011798	544.3091062340202	50.647	0.52872	50.647	50.421	50.949	0	0	0	NaN	87.754	35	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1302800	+		45132	19550	37351	37374							0.060801024034162765
QEKTNIEPR	9	Unmodified	_QEKTNIEPR_					0	0	0			REV__ENST00000482979.5_1_7:99621129-99621950:+|nuORF	REV__ENST00000482979.5_1_7:99621129-99621950:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	557.7957763671875	2	557.796195	1113.57784	2.4375	0.0013596	-3.5125	-0.0019592	-1.075	-0.00059963	557.7940345891211	85.259	2.5743	85.259	83.419	85.994	0					157	61	4	0	0	0	0.3249	1	8851	8851		60.118	3.3972	1	5211400	+		45133	17784	37352	37375	48613	48613					0.02559038495292043
QEKVLEELP	9	Unmodified	_QEKVLEELP_					0	0	0			REV__ENSG00000213024|ENST00000352066|NUP62	REV__ENSG00000213024|ENST00000352066|NUP62	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.349365234375	2	542.797872	1083.58119	-0.54009	-0.00029316	0.16862	9.1526E-05	-0.37147	-0.00020163	542.7979733360365	64.994	0.72617	61.509	61.26	61.987	-3.4854					28	14	3	0	0	0	0.027462	1	4703	4703		36.447	17.343	1	104310	+		45134	23253	37353	37376	48614	48614					0.04274288549299854
QELAKIKKQGV	11	Unmodified	_QELAKIKKQGV_					0	0	0			REV__ENST00000494092.1_1_1:44685134-44686104:+|nuORF	REV__ENST00000494092.1_1_1:44685134-44686104:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.5911560058594	3	414.590717	1240.75032	0.92323	0.00038276	0.25554	0.00010595	1.1788	0.00048871	414.5907458901833	32.76	2.0475	30.065	29.544	31.591	-2.6954					114	43	4	0	0	0	0.65267	1	817	817		39.873	2.365	1	215500	+		45135	22040	37354	37377	48615	48615					0.13957609902649892
QELARNCPEL	10	Unmodified	_QELARNCPEL_					0	0	0		ENSG00000107872|ENST00000369956|FBXL15	ENSG00000107872|ENST00000369956|FBXL15	ENSG00000107872|ENST00000369956|FBXL15	MULTI-MSMS	OvCa99_classI_Rep5	1	586.7900390625	2	586.790055	1171.56556	-0.07	-4.1075E-05	-2.9048	-0.0017045	-2.9748	-0.0017456	586.7882846229901	58.328	0.78212	58.328	58.069	58.852	0					46	18	3	0	0	0	0.48398	1	4966	4966		56.434	1.3499	1	4208400			45136	2623	37355	37378	48616	48616					-0.01336321239409699
QELCLWAAPS	10	Unmodified	_QELCLWAAPS_					0	0	0			REV__ENST00000478863.5_1_19:10666000-10676642:-|nuORF	REV__ENST00000478863.5_1_19:10666000-10676642:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.843505859375	2	559.270967	1116.52738	2.8153	0.0015745	1.0802	0.00060415	3.8955	0.0021786	559.2714133508711	80.141	0.67106	80.141	79.944	80.615	0					37	15	4	0	0	0	0.026714	1	8273	8273		60.118	24.966	1	3921100	+		45137	26426	37356	37379	48617	48617					-0.026222071540814795
QELCSLGFDLQ	11	Unmodified	_QELCSLGFDLQ_					0	0	0			REV__ENSG00000197496|ENST00000359271|SLC2A10	REV__ENSG00000197496|ENST00000359271|SLC2A10	MULTI-SECPEP	OvCa99_classI_Rep5	1	417.5434265136719	3	418.200789	1251.58054	0.29839	0.00012479	-0.055565	-2.3237E-05	0.24283	0.00010155	418.20018853495384	30.211	0.29722	30.211	30.036	30.334	0					13	5	3	0	0	0	0.026079	1	1123	1123		31.634	12.372	1	60240	+		45138	22930	37357	37380	48618	48618					-0.035188741620686415
QELEEKLNIL	10	Unmodified	_QELEEKLNIL_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OvCa99_classI_Rep5	1	614.8447875976562	2	614.84281	1227.67107	-0.41019	-0.0002522	-0.69345	-0.00042636	-1.1036	-0.00067856	614.8424451416703	104.7	1.2082	104.7	104.36	105.57	0					56	27	3	0	0	0	0.24109	1	11741	11741		88.177	9.9132	1	3233600			45139	2048	37358	37381	48619	48619					0.06633918157854168
QELFIGAGGQ	10	Unmodified	_QELFIGAGGQ_					0	0	0		tr|A0A553SGF8|A0A553SGF8_NIACIThiaminebiosynthesisproteinMoeBOS=NialliacirculansOX=1397GN=CEQ21_10770PE=4SV=1	tr|A0A553SGF8|A0A553SGF8_NIACIThiaminebiosynthesisproteinMoeBOS=NialliacirculansOX=1397GN=CEQ21_10770PE=4SV=1	tr|A0A553SGF8|A0A553SGF8_NIACIThiaminebiosynthesisproteinMoeBOS=NialliacirculansOX=1397GN=CEQ21_10770PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.8434753417969	2	510.261456	1018.50836	0.35358	0.00018042	-1.2784	-0.00065232	-0.92481	-0.0004719	510.2608568172122	124.97	0.74052	124.73	124.42	125.16	-0.2359					18	14	2	0	0	0	0.026849	1	12163	12163		32.812	6.1195	1	16396			45140	33152	37359	37382	48620	48620					-0.00015420453462411388
QELFRLKVE	9	Unmodified	_QELFRLKVE_					0	0	0			REV__ENSG00000197948|ENST00000435817|FCHSD1	REV__ENSG00000197948|ENST00000435817|FCHSD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.779541015625	2	581.334956	1160.65536	-0.75678	-0.00043995	-0.68798	-0.00039995	-1.4448	-0.00083989	581.3347045119212	103.51	0.29714	103.51	103.34	103.64	0					13	6	3	0	0	0	0.027358	1	11555	11555		47.96	0	1	265440	+		45141	22970	37360	37383	48621	48621					0.08145676431445281
QELHELINKK	10	Unmodified	_QELHELINKK_					0	0	0			REV__nc|ENSG00000109572|P51790-2|CLCN3	REV__nc|ENSG00000109572|P51790-2|CLCN3	MULTI-MSMS	OvCa9_classI_Rep4_	4	417.9065856933594	3	417.906705	1250.69829	-0.66582	-0.00027825	-0.54093	-0.00022606	-1.2068	-0.00050431	417.90655321620505	51.424	2.2109	48.251	47.972	50.183	-3.1734					136	43	6	0	0	0	0.22073	1	3032	3032		91.265	15.096	1	5317600	+		45142	28790	37361	37384	48622	48622					0.08296446488884612
QELIKENQQ	9	Unmodified	_QELIKENQQ_					0	0	0			REV__PIGS-SPAG5|1|fusion;REV__ENST00000580676.1_1_17:26905530-26906263:-|nuORF	REV__PIGS-SPAG5|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	566.2813720703125	2	565.296027	1128.5775	1.8697	0.001057	1.1233	0.00063502	2.9931	0.001692	565.2968238583503	67.155	0.64472	63.665	63.541	64.186	-3.4902					14	12	2	0	0	0	0.027426	1	4947	4947		66.429	15.094	1	21468	+		45143	16992;27823	37362	37385	48623	48623					0.01835618775430703
QELIWTTRTT	10	Unmodified	_QELIWTTRTT_					0	0	0			REV__ENSG00000197653|ENST00000673944|DNAH10	REV__ENSG00000197653|ENST00000673944|DNAH10	MULTI-MSMS	OvCa9_classI_Rep4_	4	624.833740234375	2	624.832777	1247.651	-0.33712	-0.00021064	0.23328	0.00014576	-0.10384	-6.4883E-05	624.8328150193545	94.259	1.9876	91.79	91.478	93.465	-2.4685					116	39	4	0	0	0	0.25842	1	8302	8302		85.862	18.368	1	870350	+		45144	22941	37363	37386	48624	48624					0.03708167217882874
QELKIEKL	8	Unmodified	_QELKIEKL_					0	0	0		ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.8067321777344	2	500.8055	999.596446	-0.54965	-0.00027527	0.1048	5.2485E-05	-0.44485	-0.00022278	500.8053890007759	58.223	0.75021	54.878	54.596	55.347	-3.3449					42	14	4	0	0	0	0.31763	1	3820	3820		104.06	0	1	392820			45145	8129	37364	37387	48625	48625					0.09663200137140393
QELKIEKL	8	Unmodified	_QELKIEKL_					0	0	0		ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	MULTI-MATCH	OvCa9_classI_Rep2	2		2	500.8055	999.596446	-1.0442	-0.00052293	0.72435	0.00036276	-0.31983	-0.00016017	500.80558462808773	57.576	1.2482	54.784	54.328	55.576	-2.792	-0.047085	0.00041573	NaN	104.06	56	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111360			45146	8129	37364	37387							0.09663200137140393
QELKRKRE	8	Unmodified	_QELKRKRE_					0	0	0			REV__nc|ENSG00000166436|O15016-2|TRIM66	REV__nc|ENSG00000166436|O15016-2|TRIM66	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.7882080078125	2	543.822547	1085.63054	-0.88353	-0.00048048	0.097966	5.3276E-05	-0.78557	-0.00042721	543.8224620584012	28.215	0.59711	28.215	28.041	28.638	0					18	11	2	0	0	0	0.028476	1	953	953		11.511	0	1	439820	+		45147	21193	37365	37388	48626	48626					0.09115041348741215
QELKVIGF	8	Unmodified	_QELKVIGF_					0	0	0		ENST00000298875.8_1_14:92628287-92628362:+|nuORF	ENST00000298875.8_1_14:92628287-92628362:+|nuORF	ENST00000298875.8_1_14:92628287-92628362:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.75360107421875	2	467.273835	932.533118	-1.0882	-0.00050847	-2.9885	-0.0013964	-4.0766	-0.0019049	467.2723404673491	34.609	0.28089	34.609	34.444	34.725	0					9	5	2	0	0	0	0.028476	1	1691	1691		38.806	0	1	78222			45148	10157	37366	37389	48627	48627					0.06415259419895847
QELLGLSPL	9	Unmodified	_QELLGLSPL_					0	0	0		NOP9|p.F116L|1|0.06|ENSG00000196943|chr14:24300506-24300506|T/C|missense_variant	NOP9|p.F116L|1|0.06|ENSG00000196943|chr14:24300506-24300506|T/C|missense_variant	NOP9|p.F116L|1|0.06|ENSG00000196943|chr14:24300506-24300506|T/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.2830810546875	2	485.2844	968.554247	0.7704	0.00037386	-3.6213	-0.0017574	-2.8509	-0.0013835	485.28250543597454	33.895	1.5942	31.106	30.706	32.301	-2.7881					60	31	3	0	0	0	0.63422	1	995	995		27.882	6.9353	1	135770			45149	15436	37367	37390	48628	48628					0.06871224728774905
QELLLRRW	8	Unmodified	_QELLLRRW_					0	0	0			REV__ENST00000457010.6_2_16:31477307-31478207:+|nuORF	REV__ENST00000457010.6_2_16:31477307-31478207:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.3307495117188	2	557.330008	1112.64546	-0.031635	-1.7631E-05	-2.0679	-0.0011525	-2.0995	-0.0011701	557.3287360893569	82.001	2.0398	79.318	78.914	80.954	-2.6829					73	41	4	0	0	0	0.67745	1	6861	6861		47.916	3.5384	1	770810	+		45150	19695	37368	37391	48629	48629					0.09364533216739801
QELLMQKR	8	Unmodified	_QELLMQKR_					0	0	0		ENSG00000006611|ENST00000005226|USH1C;nc|ENSG00000006611|Q9Y6N9-3|USH1C;nc|ENSG00000006611|Q9Y6N9-2|USH1C;nc|ENSG00000006611|Q9Y6N9-4|USH1C;nc|ENSG00000006611|Q9Y6N9|USH1C	ENSG00000006611|ENST00000005226|USH1C	ENSG00000006611|ENST00000005226|USH1C	MULTI-MSMS	OvCa9_classI_Rep2	2	523.292724609375	2	523.294776	1044.575	0.2957	0.00015474	-3.4486	-0.0018047	-3.1529	-0.0016499	523.292741297811	64.631	1.0505	61.906	61.337	62.388	-2.7245					44	19	4	0	0	0	0.59904	1	4945	4945		64.207	0	1	391440			45151	883	37369	37392	48630	48630					0.05449491836770903
QELMEELRM	9	2 Oxidation (M)	_QELM(Oxidation (M))EELRM(Oxidation (M))_		QELM(1)EELRM(1)		QELM(100)EELRM(100)	0	0	2		nc|ENSG00000187912|Q6ZS10-3|CLEC17A;ENSG00000187912|ENST00000417570|CLEC17A;nc|ENSG00000187912|Q6ZS10-2|CLEC17A	nc|ENSG00000187912|Q6ZS10-3|CLEC17A	nc|ENSG00000187912|Q6ZS10-3|CLEC17A	MULTI-MSMS	OvCa99_classI_Rep5	1	605.775634765625	2	605.775756	1209.53696	-0.012386	-7.5031E-06	-0.15513	-9.3976E-05	-0.16752	-0.00010148	605.7756818444004	41.036	0.62469	41.036	40.795	41.42	0					38	13	4	0	0	0	0.083631	1	2531	2531		101.6	31.973	1	1157600			45152	8441	37370	37393	48631	48631		257;258			-0.05942806930875122
QELMVVEAEP	10	Oxidation (M)	_QELM(Oxidation (M))VVEAEP_		QELM(1)VVEAEP		QELM(93)VVEAEP	0	0	1			REV__ENST00000588723.5_1_19:37606065-37660830:-|nuORF	REV__ENST00000588723.5_1_19:37606065-37660830:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	580.779541015625	2	580.778822	1159.54309	-0.48583	-0.00028216	-2.26	-0.0013125	-2.7458	-0.0015947	580.7772597879881	103.5	1.431	103.5	102.98	104.41	0					76	33	4	0	0	0	0.20836	1	11555	11555		93.143	10.393	1	4151900	+		45153	22881	37371	37394	48632	48632		530			-0.03029965427708703
QELNAREEQD	10	Unmodified	_QELNAREEQD_					0	0	0		nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1;ENST00000505501.1_1_4:56724546-56734701:+|nuORF	nc|ENSG00000090989|Q9NV70-2|EXOC1	nc|ENSG00000090989|Q9NV70-2|EXOC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	616.8307495117188	2	616.281106	1230.54766	0.40976	0.00025253	-4.43	-0.0027301	-4.0202	-0.0024776	616.2787309672473	81.203	0.29263	81.203	81.037	81.329	0					10	6	2	0	0	0	0.027028	1	8366	8366		39.253	10.083	1	216130			45154	1856	37372	37395	48633	48633					-0.05839364960570492
QELNLPSLLE	10	Unmodified	_QELNLPSLLE_					0	0	0			REV__nc|ENSG00000197879|O00159-2|MYO1C	REV__nc|ENSG00000197879|O00159-2|MYO1C	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.2916259765625	2	578.316428	1154.6183	1.7552	0.001015	2.3421	0.0013545	4.0973	0.0023695	578.3175841658089	100.22	0.75258	100.22	99.777	100.53	0					31	17	3	0	0	0	0.026519	1	11054	11054		59.931	11.971	1	683990	+		45155	22960	37373	37396	48634	48634					0.047179600950585154
QELQEYQNK	9	Unmodified	_QELQEYQNK_					0	0	0		ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2;nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2;ENST00000469848.1_1_2:24516536-24518574:-|nuORF	ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant	ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	590.3028564453125	2	590.28566	1178.55677	-1.8331	-0.0010821	3.8027	0.0022447	1.9696	0.0011626	590.2882226182617	77.058	0.68124	74.686	74.295	74.976	-2.3715					17	12	2	0	0	0	0.027017	1	3963	3963		82.241	2.5279	1	11297			45156	8815	37374	37397	48635	48635					-0.025369716042632717
QELQPCPFPL	10	Unmodified	_QELQPCPFPL_					0	0	0			REV__ENST00000528475.1_1_8:144644315-144644603:+|nuORF	REV__ENST00000528475.1_1_8:144644315-144644603:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.2952880859375	2	586.294442	1170.57433	-0.79715	-0.00046736	3.7906	0.0022224	2.9934	0.001755	586.2965844461413	39.743	1.171	36.789	36.566	37.737	-2.9541					63	22	4	0	0	0	0.42962	1	1664	1664		64.207	12.872	1	330920	+		45157	27105	37375	37398	48636	48636					-0.004133476029210215
QELRRKKEELL	11	Unmodified	_QELRRKKEELL_					0	0	0		tr|A0A7D6ZWU4|A0A7D6ZWU4_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_19315PE=3SV=1	tr|A0A7D6ZWU4|A0A7D6ZWU4_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_19315PE=3SV=1	tr|A0A7D6ZWU4|A0A7D6ZWU4_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_19315PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	481.2822265625	3	481.287697	1440.84126	-6.6786	-0.0032143	-1.9719	-0.00094904	-8.6505	-0.0041634	481.2868612614486	161.01	3.7232	159.65	158.49	162.21	-1.3523					206	77	3	0	0	0	0.72524	1	14082	14082		12.433	3.221	1	127690			45158	35855	37376	37399	48637	48637					0.13847453880134708
QELVFRPIT	9	Unmodified	_QELVFRPIT_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1;ENST00000540175.1_1_12:20704556-20705942:+|nuORF	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-SECPEP	OvCa9_classI_Rep3	3	552.8128662109375	2	551.816399	1101.61824	-0.050287	-2.7749E-05	-0.66809	-0.00036866	-0.71837	-0.00039641	551.8163770246207	105.45	1.0409	104.11	103.83	104.87	-1.3482					41	19	3	0	0	0	0.027462	1	7477	7477		45.972	15.655	1	62390			45159	9576	37377	37400	48638	48638					0.07150004885693306
QELYALLDQK	10	Unmodified	_QELYALLDQK_					0	0	0			REV__JMJD1C-CTNNA3|1|fusion	REV__JMJD1C-CTNNA3|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	611.2975463867188	2	610.829703	1219.64485	0.17738	0.00010835	2.2567	0.0013785	2.4341	0.0014868	611.3326308259265	46.808	0.2192	46.808	46.719	46.938	0					5	4	2	0	0	0	0.026975	1	3324	3324		14.137	7.8245	1	35854	+		45160	22350	37378	37401	48639	48639					0.04381648986372966
QEMHLKMSK	9	Unmodified	_QEMHLKMSK_					0	0	0		nc|ENSG00000111879|Q8NB25-2|FAM184A;nc|ENSG00000111879|Q8NB25-3|FAM184A;ENSG00000111879|ENST00000338891|FAM184A	nc|ENSG00000111879|Q8NB25-2|FAM184A	nc|ENSG00000111879|Q8NB25-2|FAM184A	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.7939453125	2	566.286094	1130.55763	1.2265	0.00069456	2.6653	0.0015093	3.8918	0.0022039	566.2875695286834	74.523	0.68081	74.523	74.324	75.005	0					22	16	2	0	0	0	0.027462	1	7423	7423		44.377	18.803	1	711920			45161	2861	37379	37402	48640	48640					-0.0024217176053298317
QEMNISLVW	9	Unmodified	_QEMNISLVW_					0	0	0		nc|ENSG00000164180|Q8NDZ6-2|TMEM161B;ENSG00000164180|ENST00000296595|TMEM161B;ENST00000503755.5_1_5:87502254-87524301:-|nuORF;nc|ENSG00000164180|Q8NDZ6-3|TMEM161B	nc|ENSG00000164180|Q8NDZ6-2|TMEM161B	nc|ENSG00000164180|Q8NDZ6-2|TMEM161B	MULTI-SECPEP	OvCa9_classI_Rep3	3	559.359130859375	2	560.278792	1118.54303	-0.52637	-0.00029491	3.3689	0.0018875	2.8425	0.0015926	560.2804723109582	98.816	1.0282	97.131	96.904	97.932	-1.685					38	19	3	0	0	0	0.027433	1	6600	6600		54.776	5.3348	1	106740			45162	6427	37380	37403	48641	48641					-0.011499206369990134
QEMNISLVW	9	Unmodified	_QEMNISLVW_					0	0	0		nc|ENSG00000164180|Q8NDZ6-2|TMEM161B;ENSG00000164180|ENST00000296595|TMEM161B;ENST00000503755.5_1_5:87502254-87524301:-|nuORF;nc|ENSG00000164180|Q8NDZ6-3|TMEM161B	nc|ENSG00000164180|Q8NDZ6-2|TMEM161B	nc|ENSG00000164180|Q8NDZ6-2|TMEM161B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	560.278792	1118.54303	0.2078	0.00011643	2.9674	0.0016626	3.1752	0.001779	560.2802110247169	98.02	1.1311	97.127	96.826	97.957	-0.89306	0.081712	0.00061136	NaN	54.776	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86496			45163	6427	37380	37403							-0.011499206369990134
QENDFPALI	9	Unmodified	_QENDFPALI_					0	0	0			REV__ENST00000584289.5_1_17:65341859-65362635:-|nuORF	REV__ENST00000584289.5_1_17:65341859-65362635:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.7793579101562	2	523.761289	1045.50803	0.030172	1.5803E-05	3.2921	0.0017243	3.3223	0.0017401	523.7628742182102	72.662	0.14928	72.662	72.574	72.723	0					5	3	2	0	0	0	0.027279	1	7086	7086		82.305	23.523	1	44580	+		45164	22899	37381	37404	48642	48642					-0.01290840173351171
QENIASGISAK	11	Unmodified	_QENIASGISAK_					0	0	0		nc|ENSG00000188158|Q6T4R5-4|NHS;nc|ENSG00000188158|Q6T4R5-3|NHS;nc|ENSG00000188158|Q6T4R5-2|NHS;ENSG00000188158|ENST00000676302|NHS	nc|ENSG00000188158|Q6T4R5-4|NHS	nc|ENSG00000188158|Q6T4R5-4|NHS	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.3353881835938	2	559.296027	1116.5775	0.078493	4.3901E-05	-1.7536	-0.00098079	-1.6751	-0.00093689	559.2943388231521	106.52	0.87917	104.5	104.21	105.09	-2.0161					29	16	3	0	0	0	0.017784	1	9680	9680		74.165	0	1	27573			45165	8455	37382	37405	48643	48643					0.023876187754240163
QENQYITDEI	10	Unmodified	_QENQYITDEI_					0	0	0			REV__tr|A0A553SLD3|A0A553SLD3_NIACIATP-dependentDNAhelicaseOS=NialliacirculansOX=1397GN=CEQ21_20305PE=4SV=1	REV__tr|A0A553SLD3|A0A553SLD3_NIACIATP-dependentDNAhelicaseOS=NialliacirculansOX=1397GN=CEQ21_20305PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	417.90679931640625	3	418.19458	1251.56191	-0.56583	-0.00023663	-1.8135	-0.00075838	-2.3793	-0.00099501	418.1937697045202	52.143	0.91164	48.935	48.641	49.553	-3.208					30	17	2	0	0	0	0.026906	1	3071	3071		27.047	0	1	125380	+		45166	30211	37383	37406	48644	48644					-0.05380712532269172
QENTQTPTV	9	Unmodified	_QENTQTPTV_					0	0	0		nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|Q13765|NACA;ENST00000419462.1_1_8:102381493-102381775:+|nuORF;nc|ENSG00000228224|Q9BZK3|NACA4P;ENSG00000253506|ENST00000521764|NACA2	nc|ENSG00000196531|E9PAV3-2|NACA	nc|ENSG00000196531|E9PAV3-2|NACA	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.2464904785156	2	509.246003	1016.47745	0.082277	4.1899E-05	-0.11954	-6.0877E-05	-0.037265	-1.8977E-05	509.2457679445865	59.816	1.2337	56.421	56.147	57.38	-3.3947					62	24	4	0	0	0	0.14855	2	4016	4007;4016		85.161	13.865	1	673690			45167	8621	37384	37407	48645;48646	48646					-0.030126185583867482
QEPGFAEVLP	10	Unmodified	_QEPGFAEVLP_					0	0	0		nc|ENSG00000090539|Q9H2X0-5|CHRD;ENSG00000090539|ENST00000204604|CHRD;ENST00000460627.5_1_3:184100608-184100992:+|nuORF;ENST00000470150.5_1_3:184100608-184105741:+|nuORF	nc|ENSG00000090539|Q9H2X0-5|CHRD	nc|ENSG00000090539|Q9H2X0-5|CHRD	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.3465576171875	2	543.776939	1085.53933	-1.1004	-0.0005984	-2.3367	-0.0012706	-3.4371	-0.001869	543.7752533597053	65.505	1.0185	62.019	61.647	62.665	-3.4854					47	20	3	0	0	0	0.02663	1	4715	4715		51.193	0	1	143960			45168	1842	37385	37408	48647	48647					-2.2671392343909247E-05
QEPLHNEEL	9	Unmodified	_QEPLHNEEL_					0	0	0		nc|ENSG00000198171|Q96HY6-2|DDRGK1;ENSG00000198171|ENST00000354488|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	MULTI-MSMS	OvCa99_classI_Rep5	1	554.7678833007812	2	554.767103	1107.51965	0.05466	3.0324E-05	0.035695	1.9803E-05	0.090355	5.0126E-05	554.7670632974249	60.759	0.7226	60.759	60.477	61.2	0					27	16	2	0	0	0	0.22621	1	5315	5315		71.877	24.22	1	3188500			45169	15255	37386	37409	48648	48648					-0.02980643149999196
QEPSGASCS	9	Unmodified	_QEPSGASCS_					0	0	0			REV__ENST00000374721.7_1_10:35500469-35500688:+|nuORF	REV__ENST00000374721.7_1_10:35500469-35500688:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1714782714844	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.6653	1	1604	1604		24.203	0	1	60065	+		45170	25067	37387	37410	48649	48649					-0.10924467452775843
QEPTVTEQLK	10	Unmodified	_QEPTVTEQLK_					0	0	0		DEFB127|p.K14E|1|0.48|ENSG00000088782|chr20:157584-157584|A/G|missense_variant	DEFB127|p.K14E|1|0.48|ENSG00000088782|chr20:157584-157584|A/G|missense_variant	DEFB127|p.K14E|1|0.48|ENSG00000088782|chr20:157584-157584|A/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.8125	2	586.81151	1171.60847	-0.23843	-0.00013991	0.10391	6.0974E-05	-0.13452	-7.8939E-05	586.8114189133727	96.307	1.2543	93.882	93.609	94.863	-2.4256					55	24	4	0	0	0	0.20836	1	8499	8499		93.143	0	1	390460			45171	726	37388	37411	48650	48650					0.02952772089656719
QEPTVTEQLK	10	Unmodified	_QEPTVTEQLK_					0	0	0		DEFB127|p.K14E|1|0.48|ENSG00000088782|chr20:157584-157584|A/G|missense_variant	DEFB127|p.K14E|1|0.48|ENSG00000088782|chr20:157584-157584|A/G|missense_variant	DEFB127|p.K14E|1|0.48|ENSG00000088782|chr20:157584-157584|A/G|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	586.81151	1171.60847	-0.56199	-0.00032978	0.17727	0.00010403	-0.38472	-0.00022576	586.811403420887	94.968	1.5807	93.869	93.411	94.991	-1.0995	-0.0047981	-0.00015181	NaN	93.143	68	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244700			45172	726	37388	37411							0.02952772089656719
QEPTVTEQLK	10	Unmodified	_QEPTVTEQLK_					0	0	0		DEFB127|p.K14E|1|0.48|ENSG00000088782|chr20:157584-157584|A/G|missense_variant	DEFB127|p.K14E|1|0.48|ENSG00000088782|chr20:157584-157584|A/G|missense_variant	DEFB127|p.K14E|1|0.48|ENSG00000088782|chr20:157584-157584|A/G|missense_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	586.81151	1171.60847	-2.2081	-0.0012957	1.8452	0.0010828	-0.36287	-0.00021294	586.8122634801645	95.699	1.454	93.871	93.582	95.036	-1.8286	-0.0030576	0.0018057	NaN	93.143	53	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	391790			45173	726	37388	37411							0.02952772089656719
QEQDRELI	8	Unmodified	_QEQDRELI_					0	0	0			REV__nc|ENSG00000132361|O75153|CLUH	REV__nc|ENSG00000132361|O75153|CLUH	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.7926635742188	2	515.76182	1029.50909	-0.35627	-0.00018375	-2.5872	-0.0013344	-2.9435	-0.0015181	516.2622095255655	77.296	0.20898	74.935	74.777	74.986	-2.3617					5	3	2	0	0	0	0.028476	1	4027	4027		31.955	0	1	10398	+		45174	19071	37389	37412	48651	48651					-0.004486258044153146
QEQEKNKIL	9	Unmodified	_QEQEKNKIL_					0	0	0		ENST00000585247.5_1_18:21776082-21819331:-|nuORF;nc|ENSG00000141447|Q9BXW6-4|OSBPL1A;ENSG00000141447|ENST00000319481|OSBPL1A	ENST00000585247.5_1_18:21776082-21819331:-|nuORF	ENST00000585247.5_1_18:21776082-21819331:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	565.3155517578125	2	565.31422	1128.61389	2.0289	0.001147	0.14692	8.3059E-05	2.1759	0.00123	565.3142078236802	80.802	0.80527	80.802	80.274	81.08	0					31	18	3	0	0	0	0.094616	1	8300	8300		98.629	5.4339	1	1867300			45175	4914	37390	37413	48652	48652					0.05472495672142941
QEQLQDATK	9	Unmodified	_QEQLQDATK_					0	0	0			REV__ENSG00000165813|ENST00000369287|CCDC186	REV__ENSG00000165813|ENST00000369287|CCDC186	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.3106689453125	2	530.767103	1059.51965	0.010117	5.37E-06	2.6684	0.0014163	2.6785	0.0014217	531.2715435239294	31.004	0.24651	31.004	30.781	31.027	0					6	4	2	0	0	0	0.027462	1	1230	1230		33.922	4.7721	1	10367	+		45176	21123	37391	37414	48653	48653					-0.007726431500032049
QEQPYKWFLWF	11	Unmodified	_QEQPYKWFLWF_					0	0	0			REV__nc|ENSG00000169241|Q9BRV3-2|SLC50A1	REV__nc|ENSG00000169241|Q9BRV3-2|SLC50A1	MULTI-MSMS	OvCa99_classI_Rep5	1	524.5922241210938	3	524.594238	1570.76089	-0.63165	-0.00033136	-3.4382	-0.0018036	-4.0698	-0.002135	524.5925658314798	35.781	0.87629	35.781	35.566	36.442	0					63	18	6	0	0	0	0.72511	1	1834	1834		14.086	3.9821	1	2823000	+		45177	21448	37392	37415	48654	48654					-0.0016640744292999443
QEQTELEKL	9	Unmodified	_QEQTELEKL_					0	0	0			REV__L1P2_dup1497|chr19:20226195-20227139:-|1.0833442391613386|0.1594826865315493|2.76|428.0|20|2|sense	REV__L1P2_dup1497|chr19:20226195-20227139:-|1.0833442391613386|0.1594826865315493|2.76|428.0|20|2|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	559.2938842773438	2	559.290411	1116.56627	-0.66878	-0.00037404	-1.212	-0.00067785	-1.8808	-0.0010519	559.2895981741863	44.064	0.79303	44.064	43.78	44.573	0					36	17	3	0	0	0	0.064985	1	2940	2940		110.12	0.64154	1	1895900	+		45178	28451	37393	37416	48655	48655					0.012647966813119638
QEQVRKEAEK	10	Unmodified	_QEQVRKEAEK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.P12974Lfs*4|1|0.05|ENSG00000155657|chr2:178631204-178631205|-/GTACA|frameshift_variant;TTN|p.E11597Rfs*5|1|0.5|ENSG00000155657|chr2:178651954-178651954|A/-|frameshift_variant;TTN|p.R11195Efs*5|1|0.15|ENSG00000155657|chr2:178674318-178674318|A/-|frameshift_variant;TTN|p.E9011Nfs*14|1|0.03|ENSG00000155657|chr2:178711255-178711255|T/-|frameshift_variant;TTN|p.G8550Tfs*3|1|0.05|ENSG00000155657|chr2:178714032-178714059|ATTTGTTGTCACTTGTTAGCTCTTTTCC/-|frameshift_variant;TTN|p.S7694Qfs*32|1|0.04|ENSG00000155657|chr2:178719360-178719360|G/-|frameshift_variant;TTN|p.C7689Pfs*18|1|0.03|ENSG00000155657|chr2:178719373-178719374|CA/-|frameshift_variant;TTN|p.L7641Yfs*6|1|0.07|ENSG00000155657|chr2:178719621-178719621|T/-|frameshift_variant;TTN|p.T6904Lfs*6|1|0.08|ENSG00000155657|chr2:178723439-178723439|T/-|frameshift_variant;TTN|p.V5150Afs*3|1|0.06|ENSG00000155657|chr2:178732661-178732661|A/-|frameshift_variant;TTN|p.R4157*|1|0.07|ENSG00000155657|chr2:178739814-178739815|-/C|frameshift_variant;TTN|p.E3802Dfs*59|1|0.05|ENSG00000155657|chr2:178740876-178740877|-/GAAGTAACAAGGTACATGCACATGATGTG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN;TTN|p.L3483Ifs*33|1|0.11|ENSG00000155657|chr2:178741835-178741836|-/AT|frameshift_variant;TTN|p.L962Efs*29|1|0.14|ENSG00000155657|chr2:178783023-178783024|-/AACCTCA|frameshift_variant;TTN|p.T961Ifs*17|1|0.06|ENSG00000155657|chr2:178783024-178783025|-/AAGTTTAA|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OvCa99_classI_Rep5	1	415.5585021972656	3	415.557964	1243.65206	0.24736	0.00010279	-1.686	-0.00070062	-1.4386	-0.00059783	415.55725308479003	55.579	2.331	55.579	55.064	57.396	0					141	55	6	0	0	0	0.50453	1	4571	4571		53.597	4.131	1	27744000			45179	5793;36288	37394	37417	48656	48656					0.039983815868026795
QERALRELRER	11	Unmodified	_QERALRELRER_					0	0	0		ENST00000596555.1_1_19:7852809-7854509:+|nuORF	ENST00000596555.1_1_19:7852809-7854509:+|nuORF	ENST00000596555.1_1_19:7852809-7854509:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.7422790527344	3	485.942812	1454.80661	-0.54238	-0.00026356	-2.65	-0.0012877	-3.1923	-0.0015513	485.9425883395584	46.505	0.83002	43.433	43.03	43.86	-3.0724					25	15	2	0	0	0	0.026024	1	2459	2459		25.068	0.79185	1	22416			45180	14185	37395	37418	48657	48657					0.09739630792000753
QERALRELRER	11	Unmodified	_QERALRELRER_					0	0	0		ENST00000596555.1_1_19:7852809-7854509:+|nuORF	ENST00000596555.1_1_19:7852809-7854509:+|nuORF	ENST00000596555.1_1_19:7852809-7854509:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	485.942812	1454.80661	-0.18186	-8.8373E-05	-0.7757	-0.00037694	-0.95755	-0.00046532	485.9431101524213	45.907	0.34892	43.197	43.099	43.448	-2.7097	-0.11764	0.00095517	NaN	25.068	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11822			45181	14185	37395	37418							0.09739630792000753
QEREQVTL	8	Unmodified	_QEREQVTL_					0	0	0		ENST00000546420.5_1_12:120437705-120530962:+|nuORF	ENST00000546420.5_1_12:120437705-120530962:+|nuORF	ENST00000546420.5_1_12:120437705-120530962:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	501.7696228027344	2	501.764363	1001.51417	0.040162	2.0152E-05	0.37588	0.0001886	0.41604	0.00020876	501.7642181688611	64.74	1.1003	64.74	64.17	65.271	0					60	26	3	0	0	0	0.47824	1	5897	5897		79.713	5.4575	1	7566700			45182	13533	37396	37419	48658	48658					0.013476780582095671
QERGDLEDQ	9	Unmodified	_QERGDLEDQ_					0	0	0		ENST00000507939.5_3_5:137878542-137878810:-|nuORF	ENST00000507939.5_3_5:137878542-137878810:-|nuORF	ENST00000507939.5_3_5:137878542-137878810:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.7860107421875	2	545.243992	1088.47343	-0.15972	-8.7084E-05	-0.30163	-0.00016446	-0.46134	-0.00025154	545.2434678712161	112.83	0.49379	111.38	111.21	111.7	-1.4461					14	9	2	0	0	0	0.027462	1	10472	10472		39.253	8.9351	1	20272			45183	12936	37397	37420	48659	48659					-0.06726708052087815
QERMEWWLA	9	Unmodified	_QERMEWWLA_					0	0	0			REV__ENST00000483936.5_1_1:10459744-10471502:+|nuORF	REV__ENST00000483936.5_1_1:10459744-10471502:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	624.8342895507812	2	624.79514	1247.57573	-0.076838	-4.8008E-05	-0.8129	-0.00050789	-0.88974	-0.0005559	624.7931375913519	94.176	0.25551	92.281	92.102	92.358	-1.8956					5	4	2	0	0	0	0.027462	1	6072	6072		21.96	0	1	12881	+		45184	26541	37398	37421	48660	48660					-0.038157135141773324
QERPICPLSTR	11	Unmodified	_QERPICPLSTR_					0	0	0			REV__ENSG00000172572|ENST00000359062|PDE3A	REV__ENSG00000172572|ENST00000359062|PDE3A	MULTI-MSMS	OvCa9_classI_Rep4_	4	433.8978576660156	3	433.899445	1298.6765	0.43721	0.00018971	-2.8924	-0.001255	-2.4552	-0.0010653	433.89815479486805	20.239	0.81087	18.901	18.689	19.5	-1.3386					40	16	3	0	0	0	0.69589	1	29	29		31.068	4.3184	1	90236	+		45185	21711	37399	37422	48661	48661					0.039113184686584646
QERVQRLEA	9	Unmodified	_QERVQRLEA_					0	0	0		ENSG00000169683|ENST00000306688|LRRC45	ENSG00000169683|ENST00000306688|LRRC45	ENSG00000169683|ENST00000306688|LRRC45	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.8106689453125	2	564.809636	1127.60472	-0.32119	-0.00018141	1.839	0.0010387	1.5178	0.00085729	564.8105266478774	146.61	1.7739	145.17	144.75	146.53	-1.4357					75	34	3	0	0	0	0.68424	1	14418	14418		21.96	1.013	1	178590			45186	7030	37400	37423	48662	48662					0.04602147106470511
QESAEQDQAG	10	Unmodified	_QESAEQDQAG_					0	0	0			REV__ENSG00000127804|ENST00000263092|METTL16	REV__ENSG00000127804|ENST00000263092|METTL16	MULTI-SECPEP	OvCa9_classI_Rep2	2	531.8073120117188	2	531.72035	1061.42615	-0.62929	-0.00033461	1.4155	0.00075267	0.78625	0.00041806	531.7209621139024	40.714	1.0338	38.005	37.848	38.881	-2.7097					32	20	3	0	0	0	0.026906	1	2179	2179		41.427	14.734	1	45582	+		45187	18826	37401	37424	48663	48663					-0.1021098732308019
QESCEKKGF	9	Unmodified	_QESCEKKGF_					0	0	0		nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1;ENSG00000204956|ENST00000517417|PCDHGA1	nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1	nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.3154907226562	2	528.244949	1054.47534	1.0453	0.00055215	2.6866	0.0014192	3.7318	0.0019713	528.7493050937991	126.25	0.57725	125.18	124.97	125.55	-1.0715					12	10	2	0	0	0	0.027462	1	9860	9860		30.504	3.7075	1	7583.4			45188	9041	37402	37425	48664	48664					-0.04971370567818667
QESDMNAA	8	Unmodified	_QESDMNAA_					0	0	0		tr|A0A7D6VVC5|A0A7D6VVC5_9CLOTLeucine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=leuSPE=3SV=1	tr|A0A7D6VVC5|A0A7D6VVC5_9CLOTLeucine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=leuSPE=3SV=1	tr|A0A7D6VVC5|A0A7D6VVC5_9CLOTLeucine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=leuSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1723327636719	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.74229	1	1965	1965		30.504	2.2494	1	60065			45189	35217	37403	37426	48665	48665					-0.10924467452787212
QESGRVIYE	9	Unmodified	_QESGRVIYE_					0	0	0		tr|A0A553SL24|A0A553SL24_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_19850PE=3SV=1	tr|A0A553SL24|A0A553SL24_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_19850PE=3SV=1	tr|A0A553SL24|A0A553SL24_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_19850PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.7679443359375	2	540.769645	1079.52474	-1.6294	-0.0008811	1.456	0.00078734	-0.1734	-9.3768E-05	540.7703565737867	41.913	1.5508	38.932	38.696	40.247	-2.9804					72	29	4	0	0	0	0.28934	1	1904	1904		64.207	11.271	1	817390			45190	33678	37404	37427	48666	48666					-0.011843392873743142
QESHLTSI	8	Unmodified	_QESHLTSI_					0	0	0		ENST00000491177.1_1_1:153602957-153603647:-|nuORF;ENST00000472233.1_1_1:153600604-153604578:-|nuORF	ENST00000491177.1_1_1:153602957-153603647:-|nuORF	ENST00000491177.1_1_1:153602957-153603647:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	457.7322082519531	2	457.732532	913.45051	0.063683	2.915E-05	0.21605	9.8892E-05	0.27973	0.00012804	457.7325170355408	46.872	0.8769	46.872	46.545	47.422	0					48	19	4	0	0	0	0.57734	1	3356	3356		68.787	4.5796	1	2103600			45191	12709	37405	37428	48667	48667					-0.009676823788936417
QESITALLL	9	Unmodified	_QESITALLL_					0	0	0			REV__nc|ENSG00000135424|Q13683-13|ITGA7	REV__nc|ENSG00000135424|Q13683-13|ITGA7	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.2918395996094	2	494.289682	986.564812	-1.7237	-0.00085202	1.7064	0.00084344	-0.017362	-8.5819E-06	494.2904853885966	107.49	1.1843	105.62	105.33	106.51	-1.8785					45	23	2	0	0	0	0.51865	1	9826	9826		40.778	0	1	380920	+		45192	19286	37406	37429	48668	48668					0.07099207383191697
QESKYLISTI	10	Unmodified	_QESKYLISTI_					0	0	0			REV__KDM6A|p.F953Sfs*25|1|0.5|ENSG00000147050|chrX:45078424-45078425|TT/-|frameshift_variant	REV__KDM6A|p.F953Sfs*25|1|0.5|ENSG00000147050|chrX:45078424-45078425|TT/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	590.6873779296875	2	591.324254	1180.63395	2.5624	0.0015152	-4.1232	-0.0024381	-1.5608	-0.00092291	591.3217467587842	106.35	0.70422	106.35	105.92	106.63	0					34	15	4	0	0	0	0.026849	1	11942	11942		32.812	2.4947	1	626920	+		45193	28331	37407	37430	48669	48669					0.0508624661210888
QESLEQLKV	9	Unmodified	_QESLEQLKV_					0	0	0			REV__tr|A0A553SGJ7|A0A553SGJ7_NIACIResponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_10970PE=4SV=1	REV__tr|A0A553SGJ7|A0A553SGJ7_NIACIResponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_10970PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	537.294921875	2	537.295496	1072.57644	-0.30672	-0.0001648	0.11779	6.3289E-05	-0.18892	-0.00010151	537.2954116161412	40.689	1.0305	40.689	40.432	41.462	0					56	22	5	0	0	0	0.19758	1	2488	2488		76.774	7.1465	1	1648700	+		45194	29708	37408	37431	48670	48670					0.04305404406522939
QESMIKRIL	9	Unmodified	_QESMIKRIL_					0	0	0		tr|A0A7D6ZNC7|A0A7D6ZNC7_9CLOTProbablemultidrugresistanceproteinNorMOS=ClostridiumintestinaleOX=36845GN=HZF06_15910PE=4SV=1	tr|A0A7D6ZNC7|A0A7D6ZNC7_9CLOTProbablemultidrugresistanceproteinNorMOS=ClostridiumintestinaleOX=36845GN=HZF06_15910PE=4SV=1	tr|A0A7D6ZNC7|A0A7D6ZNC7_9CLOTProbablemultidrugresistanceproteinNorMOS=ClostridiumintestinaleOX=36845GN=HZF06_15910PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.7969360351562	2	559.323534	1116.63251	2.2553	0.0012614	-0.11063	-6.1879E-05	2.1446	0.0011995	559.3235597515622	77.868	0.2974	77.868	77.714	78.011	0					10	6	2	0	0	0	0.027462	1	7889	7889		34.173	3.6689	1	118650			45195	35675	37409	37432	48671	48671					0.07886334042359522
QESVPITLL	9	Unmodified	_QESVPITLL_					0	0	0			REV__ENST00000475937.5_1_3:71542611-71592656:-|nuORF	REV__ENST00000475937.5_1_3:71542611-71592656:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	500.2923889160156	2	500.289682	998.564812	2.319	0.0011602	0.095815	4.7935E-05	2.4148	0.0012081	500.28961925925364	106.42	1.1009	106.42	105.75	106.85	0					54	24	4	0	0	0	0.094616	1	11965	11965		98.629	8.2596	1	3808000	+		45196	26279	37410	37433	48672	48672					0.06547207383187015
QETAERISI	9	Unmodified	_QETAERISI_					0	0	0			REV__ENST00000377921.7_1_10:16633859-16634114:-|nuORF	REV__ENST00000377921.7_1_10:16633859-16634114:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	523.7793579101562	2	523.77747	1045.54039	-0.11714	-6.1356E-05	-0.17992	-9.4237E-05	-0.29706	-0.00015559	523.7775021682955	72.743	0.66255	72.743	72.45	73.113	0					62	16	5	0	0	0	0.13504	1	7086	7086		87.696	7.9839	1	20421000	+		45197	25131	37411	37434	48673	48673					0.019439472296880922
QETLYKRF	8	Unmodified	_QETLYKRF_					0	0	0		nc|ENSG00000205060|Q969S0-2|SLC35B4;nc|ENSG00000205060|Q969S0-3|SLC35B4;ENSG00000205060|ENST00000378509|SLC35B4	nc|ENSG00000205060|Q969S0-2|SLC35B4	nc|ENSG00000205060|Q969S0-2|SLC35B4	MULTI-MSMS	OvCa9_classI_Rep3	3	542.7930297851562	2	542.792924	1083.57129	0.43899	0.00023828	-0.65769	-0.00035699	-0.21871	-0.00011871	542.7924359243464	131.02	0.7299	129.89	129.66	130.39	-1.1249					25	14	3	0	0	0	0.7549	1	10422	10422		24.203	1.1603	1	50077			45198	9048	37412	37435	48674	48674					0.032851453345756454
QETYEQLLDE	10	Unmodified	_QETYEQLLDE_					0	0	0			REV__nc|ENSG00000197321|O95425-4|SVIL	REV__nc|ENSG00000197321|O95425-4|SVIL	MULTI-SECPEP	OvCa99_classI_Rep5	1	634.8593139648438	2	634.288065	1266.56158	2.9272	0.0018567	0.34974	0.00022183	3.2769	0.0020785	634.288290767162	96.372	0.66978	96.372	96.168	96.838	0					25	15	2	0	0	0	0.02676	1	10566	10566		49.536	20.366	1	176000	+		45199	22911	37413	37436	48675	48675					-0.06104132252153249
QEVAVHLI	8	Unmodified	_QEVAVHLI_					0	0	0		MAD2L2|p.L23Q|1|0.08|ENSG00000116670|chr1:11680444-11680444|A/T|missense_variant	MAD2L2|p.L23Q|1|0.08|ENSG00000116670|chr1:11680444-11680444|A/T|missense_variant	MAD2L2|p.L23Q|1|0.08|ENSG00000116670|chr1:11680444-11680444|A/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	454.7649230957031	2	454.763635	907.512717	2.0727	0.00094261	0.20451	9.3005E-05	2.2773	0.0010356	454.7636468337306	79.475	2.6153	79.475	79.16	81.776	0					183	63	4	0	0	0	0.57878	3	8077	8077;8194;8279		68.485	7.5128	1	26941000			45200	14813	37414	37437	48676;48677;48678	48676					0.055260887600866226
QEVKYKNHI	9	Unmodified	_QEVKYKNHI_					0	0	0			REV__tr|A0A7D6ZVJ3|A0A7D6ZVJ3_9CLOTBypassofforesporeCC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15215PE=4SV=1	REV__tr|A0A7D6ZVJ3|A0A7D6ZVJ3_9CLOTBypassofforesporeCC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15215PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.7763061523438	2	579.81693	1157.61931	2.2018	0.0012766	-0.27403	-0.00015889	1.9278	0.0011177	579.8169005309201	75.822	0.47256	75.822	75.563	76.036	0					17	11	2	0	0	0	0.027462	1	7568	7568		32.812	11.127	1	187080	+		45201	32253	37415	37438	48679	48679					0.0468021925460107
QEVLGCQAKLL	11	Unmodified	_QEVLGCQAKLL_					0	0	0		PPM1H-C19orf54|1|fusion;ENSG00000188493|ENST00000378313|ACTMAP	PPM1H-C19orf54|1|fusion	PPM1H-C19orf54|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	601.334228515625	2	601.334098	1200.65364	2.615	0.0015725	-3.1837	-0.0019145	-0.56874	-0.000342	601.3321614739184	91.617	0.96435	91.617	91.296	92.26	0					73	22	5	0	0	0	0.068862	1	9896	9896		104.01	5.4316	1	4548800			45202	8473	37416	37439	48680	48680					0.06134299351219852
QEVLSGHSL	9	Unmodified	_QEVLSGHSL_					0	0	0		nc|ENSG00000143382|Q6UY14-2|ADAMTSL4;ENSG00000143382|ENST00000271643|ADAMTSL4;nc|ENSG00000143382|Q6UY14-3|ADAMTSL4	nc|ENSG00000143382|Q6UY14-2|ADAMTSL4	nc|ENSG00000143382|Q6UY14-2|ADAMTSL4	MULTI-MSMS	OvCa99_classI_Rep5	1	485.2553405761719	2	485.253631	968.49271	-0.011053	-5.3637E-06	0.53231	0.00025831	0.52126	0.00025294	485.25395734397983	70.974	1.3119	70.974	70.565	71.877	0					82	32	4	0	0	0	0.19758	1	6856	6856		76.774	5.4784	1	14362000			45203	5046	37417	37440	48681	48681					0.007202930294738508
QEVRGFPLLR	10	Unmodified	_QEVRGFPLLR_					0	0	0			REV__ENST00000304987.3_1_11:111594999-111595371:+|nuORF	REV__ENST00000304987.3_1_11:111594999-111595371:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	405.5704345703125	3	405.571657	1213.69314	1.0415	0.00042241	-4.2825	-0.0017369	-3.241	-0.0013145	405.5698123819081	30.018	0.30161	30.018	29.835	30.136	0					13	5	3	0	0	0	0.73938	1	1120	1120		26.063	1.8316	1	274380	+		45204	24280	37418	37441	48682	48682					0.09484187416956047
QEVVQNAGVF	10	Unmodified	_QEVVQNAGVF_					0	0	0			REV__tr|A0A553SS59|A0A553SS59_NIACIImidazolonepropionaseOS=NialliacirculansOX=1397GN=hutIPE=3SV=1	REV__tr|A0A553SS59|A0A553SS59_NIACIImidazolonepropionaseOS=NialliacirculansOX=1397GN=hutIPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2952880859375	2	545.780013	1089.54547	-0.40123	-0.00021898	-2.6172	-0.0014284	-3.0184	-0.0016474	545.7788338552987	35.407	0.41492	35.407	35.246	35.661	0					22	8	3	0	0	0	0.026891	1	1774	1774		39.253	5.7372	1	1644400	+		45205	30805	37419	37442	48683	48683					0.0042825109228488145
QEVVQVIKQM	10	Unmodified	_QEVVQVIKQM_					0	0	0		nc|ENSG00000137841|Q00722-3|PLCB2;nc|ENSG00000137841|Q00722-2|PLCB2;ENSG00000137841|ENST00000260402|PLCB2;ENST00000558505.5_1_15:40580822-40582938:-|nuORF;ENST00000560701.1_1_15:40581382-40582938:-|nuORF	nc|ENSG00000137841|Q00722-3|PLCB2	nc|ENSG00000137841|Q00722-3|PLCB2	MULTI-SECPEP	OvCa99_classI_Rep5	1	602.2804565429688	2	601.334098	1200.65364	-0.29484	-0.00017729	3.6385	0.002188	3.3437	0.0020107	601.3362341349917	40.317	0.3721	40.317	40.2	40.573	0					10	7	2	0	0	0	0.027056	1	2428	2428		27.882	1.1893	1	128330			45206	4629	37420	37443	48684	48684					0.061342993511971144
QEWFLRIKKER	11	Unmodified	_QEWFLRIKKER_					0	0	0			REV__tr|A0A553SH31|A0A553SH31_NIACIIsoleucine--tRNAligaseOS=NialliacirculansOX=1397GN=ileSPE=3SV=1	REV__tr|A0A553SH31|A0A553SH31_NIACIIsoleucine--tRNAligaseOS=NialliacirculansOX=1397GN=ileSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.7683410644531	3	511.628054	1531.86233	-0.10635	-5.441E-05	-3.1249	-0.0015988	-3.2313	-0.0016532	511.62652813352037	57.496	0.51035	54.151	53.985	54.495	-3.3449					13	9	2	0	0	0	0.026101	1	3763	3763		33.039	6.2897	1	16999	+		45207	29768	37421	37444	48685	48685					0.1176746397959505
QEWKREREIVL	11	Unmodified	_QEWKREREIVL_					0	0	0			REV__nc|ENSG00000136153|Q8WWI1-4|LMO7	REV__nc|ENSG00000136153|Q8WWI1-4|LMO7	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.78326416015625	3	495.94393	1484.80996	-0.88596	-0.00043939	0.63938	0.00031709	-0.24658	-0.00012229	495.94408698869006	35.028	0.79782	35.028	34.586	35.384	0					31	16	4	0	0	0	0.026344	1	1723	1723		14.086	4.4399	1	223570	+		45208	28872	37422	37445	48686	48686					0.08694880846041997
QEWLSRLS	8	Unmodified	_QEWLSRLS_					0	0	0		nc|ENSG00000108389|Q9NYA4|MTMR4;ENSG00000108389|ENST00000682306|MTMR4;ENST00000583966.1_1_17:56585827-56586213:-|nuORF;ENST00000580983.1_1_17:56585520-56588860:-|nuORF;MTMR4|p.E458Yfs*23|1|0.06|ENSG00000108389|chr17:58504417-58504418|-/AGGAGGTCTAGGGTAC|frameshift_variant;MTMR4|p.Q457Vfs*44|1|0.05|ENSG00000108389|chr17:58504419-58504420|-/AACATCAGGAC|frameshift_variant	nc|ENSG00000108389|Q9NYA4|MTMR4	nc|ENSG00000108389|Q9NYA4|MTMR4	MULTI-SECPEP	OvCa9_classI_Rep2	2	509.8001403808594	2	509.769448	1017.52434	0.61183	0.00031189	1.0896	0.00055546	1.7015	0.00086735	509.76934103056414	66.237	0.94336	63.542	63.121	64.064	-2.6958					27	18	2	0	0	0	0.028476	1	5081	5081		35.618	4.0885	1	42501			45209	2651	37423	37446	48687	48687					0.01628285783431238
QEYHLEKL	8	Unmodified	_QEYHLEKL_					0	0	0		tr|A0A553SP51|A0A553SP51_NIACIATP-dependentDNAhelicaseRecGOS=NialliacirculansOX=1397GN=recGPE=3SV=1	tr|A0A553SP51|A0A553SP51_NIACIATP-dependentDNAhelicaseRecGOS=NialliacirculansOX=1397GN=recGPE=3SV=1	tr|A0A553SP51|A0A553SP51_NIACIATP-dependentDNAhelicaseRecGOS=NialliacirculansOX=1397GN=recGPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.8080444335938	2	530.277106	1058.53966	1.2305	0.0006525	-1.9145	-0.0010152	-0.68406	-0.00036274	530.2760829203111	120.74	0.29454	119.71	119.51	119.8	-1.0271					7	5	2	0	0	0	0.028476	1	9214	9214		51.335	5.3835	1	9221.1			45210	34003	37424	37447	48688	48688					0.012731525806202626
QEYQRLMDI	9	Unmodified	_QEYQRLMDI_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;KRT19|p.K370R|1|0.81|ENSG00000171345|chr17:41523837-41523837|T/C|missense_variant	CON__P08727	CON__P08727	MULTI-MSMS	OvCa9_classI_Rep4_	4	598.2935180664062	2	598.29243	1194.57031	0.81317	0.00048651	-0.90904	-0.00054387	-0.095873	-5.736E-05	598.2916770172554	96.364	1.0518	93.938	93.659	94.711	-2.4256					57	20	4	0	0	0	0.3249	1	8520	8520		60.118	14.146	1	429170		+	45211	625	37425	37448	48689	48689					-0.019194370966260976
QEYSSYILE	9	Unmodified	_QEYSSYILE_					0	0	0			REV__tr|A0A553SKB7|A0A553SKB7_NIACISingle-stranded-DNA-specificexonucleaseRecJOS=NialliacirculansOX=1397GN=recJPE=3SV=1	REV__tr|A0A553SKB7|A0A553SKB7_NIACISingle-stranded-DNA-specificexonucleaseRecJOS=NialliacirculansOX=1397GN=recJPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.35302734375	2	566.263862	1130.51317	1.4494	0.00082073	-2.3371	-0.0013234	-0.88775	-0.0005027	566.2628421604737	145.59	0.29599	145.59	145.43	145.73	0					10	5	2	0	0	0	0.027462	1	17015	17015		45.952	8.7928	1	26210	+		45212	30106	37426	37449	48690	48690					-0.04686581101373122
QFDLNQSGCI	10	Unmodified	_QFDLNQSGCI_					0	0	0			REV__ENST00000429033.1_1_21:32433078-32433324:-|nuORF	REV__ENST00000429033.1_1_21:32433078-32433324:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.3033447265625	2	562.755681	1123.49681	0.66005	0.00037145	2.0192	0.0011363	2.6793	0.0015078	562.7566946634375	57.348	1.0653	57.348	56.961	58.027	0					36	24	2	0	0	0	0.027033	1	4768	4768		33.922	19.057	1	441850	+		45213	25697	37427	37450	48691	48691					-0.05999985539119734
QFDWYYRAIIQ	11	Unmodified	_QFDWYYRAIIQ_					0	0	0			REV__SKAP1|p.K49I|1|0.11|ENSG00000141293|chr17:48396686-48396686|T/A|missense_variant	REV__SKAP1|p.K49I|1|0.11|ENSG00000141293|chr17:48396686-48396686|T/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.81024169921875	3	501.585743	1501.7354	-0.89848	-0.00045067	2.1416	0.0010742	1.2431	0.00062354	501.9212481002592	58.701	1.2842	55.921	55.588	56.872	-2.7801					35	24	2	0	0	0	0.026277	1	4235	4235		12.957	6.6366	1	13532	+		45214	29365	37428	37451	48692	48692					0.004601180346526235
QFEDLIQSLQ	10	Unmodified	_QFEDLIQSLQ_					0	0	0		tr|A0A7D6ZS84|A0A7D6ZS84_9CLOTEndonucleaseMutS2OS=ClostridiumintestinaleOX=36845GN=mutS2PE=3SV=1	tr|A0A7D6ZS84|A0A7D6ZS84_9CLOTEndonucleaseMutS2OS=ClostridiumintestinaleOX=36845GN=mutS2PE=3SV=1	tr|A0A7D6ZS84|A0A7D6ZS84_9CLOTEndonucleaseMutS2OS=ClostridiumintestinaleOX=36845GN=mutS2PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.237060546875	3	407.543432	1219.60847	1.1393	0.00046433	1.8124	0.00073864	2.9518	0.001203	407.54397510815323	56.776	0.64001	56.776	56.581	57.221	0					26	14	3	0	0	0	0.026464	1	4772	4772		66.962	8.7157	1	488240			45215	35731	37429	37452	48693	48693					0.007447720896834653
QFEDLNRNK	9	Unmodified	_QFEDLNRNK_					0	0	0		ENSG00000128266|ENST00000615612|GNAZ	ENSG00000128266|ENST00000615612|GNAZ	ENSG00000128266|ENST00000615612|GNAZ	MULTI-MSMS	OvCa99_classI_Rep5	1	582.2935180664062	2	582.293819	1162.57309	0.42264	0.0002461	-1.6412	-0.00095568	-1.2186	-0.00070958	582.2931799205923	158.89	0.48624	158.89	158.65	159.14	0					15	9	3	0	0	0	0.59259	1	18635	18635		32.812	1.1781	1	139890			45216	3869	37430	37453	48694	48694					-0.0016984564749691344
QFFPQRLKN	9	Unmodified	_QFFPQRLKN_					0	0	0			REV__ENST00000497538.1_1_3:155705188-155705881:+|nuORF	REV__ENST00000497538.1_1_3:155705188-155705881:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.8135986328125	2	589.327465	1176.64038	-0.005463	-3.2195E-06	-0.38869	-0.00022906	-0.39415	-0.00023228	589.3277101182631	52.962	0.25787	52.962	52.741	52.999	0					6	5	2	0	0	0	0.027462	1	4170	4170		37.159	1.5408	1	67961	+		45217	18437	37431	37454	48695	48695					0.05912229354134979
QFFRKLTC	8	Unmodified	_QFFRKLTC_					0	0	0			REV__AP1M2-TMED1|1|fusion	REV__AP1M2-TMED1|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.8212280273438	2	521.778762	1041.54297	-1.0618	-0.00055405	-2.1303	-0.0011115	-3.1921	-0.0016656	521.7776563474573	51.81	0.58474	51.81	51.585	52.17	0					20	13	2	0	0	0	0.028476	1	4068	4068		26.796	1.3459	1	195670	+		45218	15645	37432	37455	48696	48696					0.023861241536224043
QFFYFSFFSTE	11	Unmodified	_QFFYFSFFSTE_					0	0	0			REV__ENST00000482410.5_1_10:114193035-114193086:-|nuORF	REV__ENST00000482410.5_1_10:114193035-114193086:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.7988586425781	3	483.883566	1448.62887	0.26653	0.00012897	0.89758	0.00043433	1.1641	0.0005633	483.8848442034808	60.146	0.53984	56.716	56.358	56.898	-3.43					12	10	2	0	0	0	0.026033	1	4019	4019		8.4073	0	1	11421	+		45219	26502	37433	37456	48697	48697					-0.07750057250518694
QFGQVEEKLL	10	Unmodified	_QFGQVEEKLL_					0	0	0		nc|ENSG00000089094|Q8NHM5-3|KDM2B;ENSG00000089094|ENST00000377071|KDM2B;ENST00000538503.5_1_12:121868093-121877978:-|nuORF	nc|ENSG00000089094|Q8NHM5-3|KDM2B	nc|ENSG00000089094|Q8NHM5-3|KDM2B	MULTI-MSMS	OvCa9_classI_Rep4_	4	595.8222045898438	2	595.824421	1189.63429	-1.5312	-0.0009123	1.5937	0.00094959	0.06259	3.7292E-05	595.825240376017	125.54	1.0893	124.13	123.83	124.92	-1.4143					43	21	3	0	0	0	0.65849	1	11937	11937		35.152	0.97948	1	106900			45220	1809	37434	37457	48698	48698					0.04705666331960856
QFHLIVRRRRR	11	Unmodified	_QFHLIVRRRRR_					0	0	0			REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|125|3|sense	REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|125|3|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	512.9856567382812	3	512.986798	1535.93856	-4.9038	-0.0025156	2.1914	0.0011242	-2.7124	-0.0013914	512.9879880478285	162.73	1.8375	162.51	160.84	162.68	-0.22697					96	36	4	0	0	0	0.72577	1	16576	16576		5.4129	0.27055	1	139950	+		45221	28545	37435	37458	48699	48699					0.19203325390276405
QFHPTLGEYPE	11	Unmodified	_QFHPTLGEYPE_					0	0	0		HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|242|1|anti-sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|242|1|anti-sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|242|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	440.5856628417969	3	439.875182	1316.60372	0.74129	0.00032607	3.7382	0.0016444	4.4795	0.0019704	439.87550533964475	38.904	0.22621	38.904	38.836	39.063	0					6	4	2	0	0	0	0.025668	1	2239	2239		28.577	5.1988	1	23912			45222	14402	37436	37459	48700	48700					-0.04192112053078745
QFIECVWQL	9	Unmodified	_QFIECVWQL_					0	0	0		nc|ENSG00000003987|Q9Y216-2|MTMR7;ENSG00000003987|ENST00000180173|MTMR7	nc|ENSG00000003987|Q9Y216-2|MTMR7	nc|ENSG00000003987|Q9Y216-2|MTMR7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	584.2651977539062	2	583.289159	1164.56377	-0.976	-0.00056929	4.0209	0.0023453	3.0449	0.001776	583.7925288261811	58.717	0.15087	55.325	55.249	55.4	-3.392					4	2	2	0	0	0	0.027462	1	3875	3875		32.812	14.488	1	10075			45223	822	37437	37460	48701	48701					-0.011933302573652327
QFIECVWQL	9	Unmodified	_QFIECVWQL_					0	0	0		nc|ENSG00000003987|Q9Y216-2|MTMR7;ENSG00000003987|ENST00000180173|MTMR7	nc|ENSG00000003987|Q9Y216-2|MTMR7	nc|ENSG00000003987|Q9Y216-2|MTMR7	MULTI-MATCH	OvCa9_classI_Rep2	2		2	583.289159	1164.56377	-0.70646	-0.00041207	9.321	0.0054368	8.6145	0.0050248	583.79564705698	57.841	0.34998	55.049	54.873	55.223	-2.792	-0.13796	0.0029523	NaN	40.778	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11390			45224	822	37437	37460							-0.011933302573652327
QFIITVIDN	9	Unmodified	_QFIITVIDN_					0	0	0			REV__ENSG00000105738|ENST00000222345|SIPA1L3	REV__ENSG00000105738|ENST00000222345|SIPA1L3	MULTI-SECPEP	OvCa9_classI_Rep2	2	531.8175048828125	2	531.795132	1061.57571	-1.1305	-0.00060118	1.3696	0.00072835	0.23913	0.00012717	531.7957292746214	135.78	0.44266	135.55	135.22	135.67	-0.22696					11	8	2	0	0	0	0.027462	1	13453	13453		25.574	20.016	1	6238.9	+		45225	17757	37438	37461	48702	48702					0.04738609757487211
QFISLKRI	8	Unmodified	_QFISLKRI_					0	0	0			REV__ENSG00000132326|ENST00000254657|PER2	REV__ENSG00000132326|ENST00000254657|PER2	MULTI-MSMS	OvCa99_classI_Rep5	1	502.8173828125	2	502.816202	1003.61785	1.998	0.0010046	0.58881	0.00029606	2.5869	0.0013007	502.81626621340826	98.028	0.94471	98.028	97.738	98.683	0					47	21	3	0	0	0	0.67872	1	10796	10796		47.657	1.7054	1	1062000	+		45226	19068	37439	37462	48703	48703					0.11618629956512905
QFISLKRI	8	Unmodified	_QFISLKRI_					0	0	0			REV__ENSG00000132326|ENST00000254657|PER2	REV__ENSG00000132326|ENST00000254657|PER2	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	502.816202	1003.61785	1.998	0.0010046	0.58881	0.00029606	2.5869	0.0013007	502.81626621340826	98.028	0.94471	98.028	97.738	98.683	0	0	0	NaN	47.657	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1062000	+		45227	19068	37439	37462							0.11618629956512905
QFKGPLPAPS	10	Unmodified	_QFKGPLPAPS_					0	0	0			REV__ENST00000291906.4_1_9:131464953-131465115:+|nuORF	REV__ENST00000291906.4_1_9:131464953-131465115:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.3404541015625	2	521.290017	1040.56548	-0.69212	-0.0003608	-3.6958	-0.0019266	-4.3879	-0.0022874	521.2879801716667	39.045	0.94015	36.335	36.062	37.002	-2.7097					28	18	3	0	0	0	0.02706	1	1953	1953		30.318	3.6248	1	36251	+		45228	24158	37440	37463	48704	48704					0.0468204682290434
QFKPEQMLYRF	11	Unmodified	_QFKPEQMLYRF_					0	0	0		nc|ENSG00000046889|Q70Z35-3|PREX2;ENST00000529398.5_1_8:68864629-69017594:+|nuORF;nc|ENSG00000046889|Q70Z35-4|PREX2;ENSG00000046889|ENST00000288368|PREX2;ENST00000517617.1_1_8:68864752-69023167:+|nuORF	nc|ENSG00000046889|Q70Z35-3|PREX2	nc|ENSG00000046889|Q70Z35-3|PREX2	MULTI-MSMS	OvCa99_classI_Rep5	1	496.2554016113281	3	496.255228	1485.74386	-0.99765	-0.00049509	-2.4363	-0.001209	-3.4339	-0.0017041	496.2539838807353	49.767	0.69366	49.767	49.462	50.156	0					52	15	4	0	0	0	0.68709	1	3750	3750		34.087	10.709	1	3267500			45229	1137	37441	37464	48705	48705					0.020413486796087454
QFLKCLLD	8	Unmodified	_QFLKCLLD_					0	0	0			REV__nc|ENSG00000121853|Q92847-2|GHSR	REV__nc|ENSG00000121853|Q92847-2|GHSR	MULTI-SECPEP	OvCa9_classI_Rep2	2	489.2912292480469	2	490.267696	978.520839	0.13671	6.7024E-05	2.6422	0.0012954	2.7789	0.0013624	490.26888584877884	59.202	1.4487	56.422	55.937	57.386	-2.7801					62	27	4	0	0	0	0.028476	1	4416	4416		31.955	0	1	130540	+		45230	18561	37442	37465	48706	48706					0.030718996851987868
QFLLEIDGYN	10	Unmodified	_QFLLEIDGYN_					0	0	0			REV__TRRAP|p.Q3700Cfs*14|1|0.37|ENSG00000196367|chr7:99011251-99011252|-/GTGCGTTAAATCTGTCACCAGAA|frameshift_variant	REV__TRRAP|p.Q3700Cfs*14|1|0.37|ENSG00000196367|chr7:99011251-99011252|-/GTGCGTTAAATCTGTCACCAGAA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	606.3025512695312	2	606.300778	1210.587	1.5729	0.00095366	-1.7566	-0.0010651	-0.18372	-0.00011139	606.2996215879486	130.08	3.6751	130.08	129.54	133.22	0					138	77	2	0	0	0	0.49595	1	15065	15065		54.722	4.6888	1	485860	+		45231	22817	37443	37466	48707	48707					-0.009866129390275091
QFLRHREDLKG	11	Unmodified	_QFLRHREDLKG_					0	0	0			REV__nc|ENSG00000115306|Q01082-3|SPTBN1	REV__nc|ENSG00000115306|Q01082-3|SPTBN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	467.741455078125	3	466.92487	1397.75278	-0.83332	-0.0003891	0.24181	0.00011291	-0.5915	-0.00027619	467.2593606971673	41.832	2.1201	38.852	38.075	40.195	-2.9804					88	40	3	0	0	0	0.026324	1	1931	1931		8.0344	0	1	52340	+		45232	18234	37444	37467	48708	48708					0.06981458360314718
QFLRVSVIT	9	Unmodified	_QFLRVSVIT_					0	0	0			REV__ENSG00000187713|ENST00000343666|TMEM203	REV__ENSG00000187713|ENST00000343666|TMEM203	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.2890014648438	2	531.818941	1061.62333	1.2874	0.00068466	-0.64363	-0.00034229	0.64376	0.00034236	531.8198877257715	98.343	0.34117	98.343	98.165	98.506	0					11	7	2	0	0	0	0.027462	1	10853	10853		21.96	8.5058	1	77547	+		45233	22657	37445	37468	48709	48709					0.09498308748334239
QFLRVSVIT	9	Unmodified	_QFLRVSVIT_					0	0	0			REV__ENSG00000187713|ENST00000343666|TMEM203	REV__ENSG00000187713|ENST00000343666|TMEM203	MULTI-MATCH	OvCa9_classI_Rep2	2		2	531.818941	1061.62333	-1.5559	-0.00082744	1.357	0.00072167	-0.19889	-0.00010577	531.8196463760992	99.047	1.4421	98.154	97.658	99.1	-0.89305	-0.1291	0.00018372	NaN	21.96	49	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39391	+		45234	22657	37445	37468							0.09498308748334239
QFLRVSVIT	9	Unmodified	_QFLRVSVIT_					0	0	0			REV__ENSG00000187713|ENST00000343666|TMEM203	REV__ENSG00000187713|ENST00000343666|TMEM203	MULTI-MATCH	OvCa9_classI_Rep3	3		2	531.818941	1061.62333	-0.22122	-0.00011765	-1.3471	-0.00071639	-1.5683	-0.00083405	531.8183013591449	99.991	0.70836	98.306	97.777	98.485	-1.685	0.022977	-0.0026924	NaN	21.96	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57373	+		45235	22657	37445	37468							0.09498308748334239
QFLRVSVIT	9	Unmodified	_QFLRVSVIT_					0	0	0			REV__ENSG00000187713|ENST00000343666|TMEM203	REV__ENSG00000187713|ENST00000343666|TMEM203	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	531.818941	1061.62333	-2.056	-0.0010934	1.5516	0.00082517	-0.50437	-0.00026823	531.8198760167752	100.6	0.9246	98.329	97.775	98.7	-2.2665	0.045968	0.00039072	NaN	21.96	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56719	+		45236	22657	37445	37468							0.09498308748334239
QFLVGTSR	8	Unmodified	_QFLVGTSR_					0	0	0		ENST00000406175.3_1_2:42513330-42557344:+|nuORF;nc|ENSG00000143924|Q9HC35-2|EML4;ENSG00000143924|ENST00000318522|EML4	ENST00000406175.3_1_2:42513330-42557344:+|nuORF	ENST00000406175.3_1_2:42513330-42557344:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	454.25323486328125	2	454.253434	906.492316	0.7291	0.0003312	-1.0301	-0.00046792	-0.30099	-0.00013672	454.25284656333645	38.546	1.0911	35.62	35.354	36.445	-2.9264					47	21	3	0	0	0	0.64026	1	1509	1509		55.504	0.72789	1	159650			45237	5108	37446	37469	48710	48710					0.03532918100290772
QFLVGTSR	8	Unmodified	_QFLVGTSR_					0	0	0		ENST00000406175.3_1_2:42513330-42557344:+|nuORF;nc|ENSG00000143924|Q9HC35-2|EML4;ENSG00000143924|ENST00000318522|EML4	ENST00000406175.3_1_2:42513330-42557344:+|nuORF	ENST00000406175.3_1_2:42513330-42557344:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	454.253434	906.492316	0.16198	7.3579E-05	-0.32473	-0.00014751	-0.16276	-7.3933E-05	454.25328082034315	38.501	0.59257	35.791	35.568	36.161	-2.7097	0.085486	0.00036984	NaN	55.504	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44303			45238	5108	37446	37469							0.03532918100290772
QFLYAAAPD	9	Unmodified	_QFLYAAAPD_					0	0	0			REV__ENST00000470782.5_1_17:15935612-15971511:-|nuORF	REV__ENST00000470782.5_1_17:15935612-15971511:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.7873840332031	2	498.245275	994.475997	1.0867	0.00054144	-4.061	-0.0020234	-2.9743	-0.0014819	498.2429607870012	67.575	0.7375	64.085	63.789	64.526	-3.4902					25	14	3	0	0	0	0.027462	1	4997	4997		29.15	7.4472	1	27833	+		45239	26267	37447	37470	48711	48711					-0.021462078564923104
QFLYKQVVQ	9	Unmodified	_QFLYKQVVQ_					0	0	0			REV__nc|ENSG00000138769|Q92772|CDKL2	REV__nc|ENSG00000138769|Q92772|CDKL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.3142700195312	2	576.824224	1151.63389	1.1023	0.00063584	0.29109	0.00016791	1.3934	0.00080375	576.8241954148205	119.17	0.46707	119.17	118.96	119.43	0					22	9	3	0	0	0	0.027462	1	13698	13698		25.45	0	1	659740	+		45240	19570	37448	37471	48712	48712					0.06414291402757044
QFNINEFIN	9	Unmodified	_QFNINEFIN_					0	0	0			REV__tr|A0A7D6VLQ0|A0A7D6VLQ0_9CLOTLsafamilyABC-FtyperibosomalprotectionproteinOS=ClostridiumintestinaleOX=36845GN=lsaPE=4SV=1	REV__tr|A0A7D6VLQ0|A0A7D6VLQ0_9CLOTLsafamilyABC-FtyperibosomalprotectionproteinOS=ClostridiumintestinaleOX=36845GN=lsaPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	569.2868041992188	2	569.780013	1137.54547	-0.29871	-0.0001702	-2.4699	-0.0014073	-2.7686	-0.0015775	569.7780657834671	104.02	0.78783	101.9	101.69	102.48	-2.1192					32	14	3	0	0	0	0.027432	1	9382	9382		77.318	3.0625	1	83396	+		45241	31119	37449	37472	48713	48713					-0.017797489077111095
QFPPALLSF	9	Unmodified	_QFPPALLSF_					0	0	0		ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000478672.1_1_7:5938430-5940236:+|nuORF;ENST00000464543.1_1_7:6864046-6865828:-|nuORF;ENST00000496187.5_1_7:6863683-6865828:-|nuORF;ENST00000461592.1_1_7:5938373-5940013:+|nuORF	ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000146574|ENST00000316731|CCZ1B	MULTI-MSMS	OvCa9_classI_Rep3	3	510.2807922363281	2	510.28166	1018.54877	1.5054	0.00076817	-2.3276	-0.0011877	-0.82218	-0.00041955	510.28027552379746	62.202	1.7602	59.168	58.656	60.417	-3.0339					84	39	3	0	0	0	0.50149	2	2213	2213;2241		42.396	6.4001	1	77332			45242	3546	37450	37473	48714;48715	48714					0.040235459369455384
QFRHQWFEQFW	11	Unmodified	_QFRHQWFEQFW_					0	0	0			REV__nc|ENSG00000168959|P41594-3|GRM5	REV__nc|ENSG00000168959|P41594-3|GRM5	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.28515625	3	546.92487	1637.75278	-0.39862	-0.00021801	-2.9791	-0.0016294	-3.3778	-0.0018474	546.9232341655604	51.535	0.70449	51.535	51.291	51.995	0					37	16	4	0	0	0	0.026488	1	4033	4033		6.3209	0	1	656850	+		45243	21422	37451	37474	48716	48716					-0.04058541639665236
QFSHSIAQF	9	Unmodified	_QFSHSIAQF_					0	0	0			REV__ENSG00000173548|ENST00000308527|SNX33	REV__ENSG00000173548|ENST00000308527|SNX33	MULTI-MSMS	OvCa9_classI_Rep3	3	532.762939453125	2	532.761623	1063.50869	1.0974	0.00058466	1.9349	0.0010308	3.0323	0.0016155	532.7625104763312	113.64	2.2165	112.57	112.01	114.22	-1.0753					113	43	4	0	0	0	0.55011	1	8347	8347		37.812	0.65241	1	496900	+		45244	21783	37452	37475	48717	48717					-0.020520007336017443
QFSIDKER	8	Unmodified	_QFSIDKER_					0	0	0			REV__ENST00000559997.5_1_15:89448698-89456595:-|nuORF	REV__ENST00000559997.5_1_15:89448698-89456595:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.7683410644531	2	511.766906	1021.51926	-0.1358	-6.9498E-05	-0.6359	-0.00032543	-0.7717	-0.00039493	511.76663653104475	57.61	1.4628	54.265	53.985	55.447	-3.3449					59	28	3	0	0	0	0.31763	1	3763	3763		104.06	5.0438	1	1042200	+		45245	27606	37453	37476	48718	48718					0.009359819208157205
QFSRWVPIWRR	11	Unmodified	_QFSRWVPIWRR_					0	0	0		ENST00000508276.1_1_4:2933511-2933652:-|nuORF	ENST00000508276.1_1_4:2933511-2933652:-|nuORF	ENST00000508276.1_1_4:2933511-2933652:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	510.9533386230469	3	510.952872	1529.83679	-0.81742	-0.00041766	3.7792	0.001931	2.9618	0.0015133	510.9548519015184	48.416	2.2317	45.656	44.835	47.067	-2.7603					140	44	5	0	0	0	0.72557	1	3048	3048		8.0344	2.0333	1	1255300			45246	12942	37454	37477	48719	48719					0.09306034247879325
QFSTLKKH	8	Unmodified	_QFSTLKKH_					0	0	0		ENSG00000196350|ENST00000601693|ZNF729	ENSG00000196350|ENST00000601693|ZNF729	ENSG00000196350|ENST00000601693|ZNF729	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.74041748046875	2	494.782359	987.550165	-0.98494	-0.00048733	-0.52864	-0.00026156	-1.5136	-0.0007489	494.78224699515823	37.275	0.46133	37.275	36.977	37.438	0					12	9	2	0	0	0	0.028476	1	2036	2036		38.806	8.3025	1	107690			45247	8594	37455	37478	48720	48720					0.05589180025708629
QFSTLKKH	8	Unmodified	_QFSTLKKH_					0	0	0		ENSG00000196350|ENST00000601693|ZNF729	ENSG00000196350|ENST00000601693|ZNF729	ENSG00000196350|ENST00000601693|ZNF729	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	494.782359	987.550165	-0.61302	-0.00030331	-1.6204	-0.00080175	-2.2334	-0.0011051	494.78085822127167	40.586	0.62949	37.632	37.263	37.893	-2.9541	0.17867	-0.00080482	NaN	44.117	18	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18691			45248	8594	37455	37478							0.05589180025708629
QFTELTVSVR	10	Unmodified	_QFTELTVSVR_					0	0	0			REV__nc|ENSG00000077254|Q8TEY7-3|USP33	REV__nc|ENSG00000077254|Q8TEY7-3|USP33	MULTI-SECPEP	OvCa99_classI_Rep5	1	591.2965698242188	2	590.322045	1178.62954	3.5094	0.0020717	-2.7729	-0.0016369	0.73651	0.00043478	590.3216333127465	88.317	1.0413	88.317	87.881	88.922	0					30	24	2	0	0	0	0.026906	1	9428	9428		41.427	1.3684	1	216830	+		45249	17008	37456	37479	48721	48721					0.04736782189183941
QFTEVDPTI	9	Unmodified	_QFTEVDPTI_					0	0	0			REV__ENSG00000091138|ENST00000340010|SLC26A3	REV__ENSG00000091138|ENST00000340010|SLC26A3	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.7650146484375	2	525.261122	1048.50769	-0.36307	-0.00019071	-2.8188	-0.0014806	-3.1819	-0.0016713	525.7637097829612	64.427	3.1646	60.952	60.49	63.655	-3.475					179	64	5	0	0	0	0.53957	1	4585	4585		38.806	3.6054	1	5640000	+		45250	17244	37457	37480	48722	48722					-0.01462259893173723
QFTKNIQEL	9	Unmodified	_QFTKNIQEL_					0	0	0		GIT2|p.I650F|1|0.06|ENSG00000139436|chr12:109938435-109938435|T/A|missense_variant	GIT2|p.I650F|1|0.06|ENSG00000139436|chr12:109938435-109938435|T/A|missense_variant	GIT2|p.I650F|1|0.06|ENSG00000139436|chr12:109938435-109938435|T/A|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	560.8014526367188	2	560.803488	1119.59242	2.9012	0.001627	-1.1212	-0.00062879	1.7799	0.00099819	560.8028439755808	113.13	0.69366	113.13	112.88	113.57	0					36	16	3	0	0	0	0.14855	1	12908	12908		85.161	5.4482	1	683660			45251	14340	37458	37481	48723	48723					0.03741110643431966
QFTKPKSIR	9	Unmodified	_QFTKPKSIR_					0	0	0			REV__nc|ENSG00000090238|P61236|YPEL3	REV__nc|ENSG00000090238|P61236|YPEL3	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.7462768554688	2	552.82984	1103.64513	0.44574	0.00024642	-0.29216	-0.00016151	0.15358	8.4905E-05	552.8296310840856	74.194	0.64869	74.194	73.868	74.517	0					25	16	2	0	0	0	0.027462	1	7368	7368		32.812	0	1	1258100	+		45252	17219	37459	37482	48724	48724					0.09745113496887825
QFTVAKKNTLQ	11	Unmodified	_QFTVAKKNTLQ_					0	0	0		nc|ENSG00000103534|Q6UXY8-4|TMC5;ENST00000567478.5_1_16:19467998-19503571:+|nuORF;nc|ENSG00000103534|Q6UXY8-3|TMC5;ENSG00000103534|ENST00000542583|TMC5;nc|ENSG00000103534|Q6UXY8-2|TMC5	nc|ENSG00000103534|Q6UXY8-4|TMC5	nc|ENSG00000103534|Q6UXY8-4|TMC5	MULTI-MSMS	OvCa9_classI_Rep4_	4	639.3639526367188	2	639.364244	1276.71394	-4.0344	-0.0025795	2.2611	0.0014457	-1.7733	-0.0011338	639.3655564998056	154.53	1.1695	153.08	152.77	153.94	-1.4516					91	28	4	0	0	0	0.70142	1	15312	15312		29.17	6.5904	1	586460			45253	2326	37460	37483	48725	48725					0.08664733005957714
QFVDWAGGLV	10	Unmodified	_QFVDWAGGLV_					0	0	0			REV__nc|ENSG00000075275|Q9NYQ6|CELSR1	REV__nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-MSMS	OvCa99_classI_Rep5	1	546.28515625	2	546.279649	1090.54475	-0.68791	-0.00037579	-3.4811	-0.0019017	-4.1691	-0.0022775	546.2778234491551	51.813	0.45562	51.813	51.627	52.083	0					24	10	3	0	0	0	0.42962	1	4033	4033		64.207	7.4862	1	687560	+		45254	16968	37461	37484	48726	48726					0.003094564432331026
QFVPKSHLF	9	Unmodified	_QFVPKSHLF_					0	0	0		WDR3|p.R930Gfs*9|1|0.09|ENSG00000065183|chr1:117959402-117959402|G/-|frameshift_variant;ENSG00000065183|ENST00000349139|WDR3	WDR3|p.R930Gfs*9|1|0.09|ENSG00000065183|chr1:117959402-117959402|G/-|frameshift_variant	WDR3|p.R930Gfs*9|1|0.09|ENSG00000065183|chr1:117959402-117959402|G/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	551.808837890625	2	551.805834	1101.59712	1.9212	0.0010601	-0.090952	-5.0188E-05	1.8302	0.0010099	551.8057449446794	78.229	0.70042	78.229	77.968	78.668	0					47	16	4	0	0	0	0.14998	1	7919	7919		84.916	10.66	1	4053200			45255	1317	37462	37485	48727	48727					0.05038039576857045
QFWIQVRSE	9	Unmodified	_QFWIQVRSE_					0	0	0			REV__ENSG00000258873|ENST00000554048|DUXA	REV__ENSG00000258873|ENST00000554048|DUXA	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.7723388671875	2	596.809105	1191.60366	1.9679	0.0011745	2.2806	0.0013611	4.2485	0.0025355	597.3136833169897	116.62	0.31155	116.62	116.46	116.77	0					9	6	2	0	0	0	0.027462	1	13351	13351		42.396	5.237	1	107190	+		45256	23553	37463	37486	48728	48728					0.015519327375841385
QFWVKVLF	8	Unmodified	_QFWVKVLF_					0	0	0			REV__chr10:117546099-117548065|141|13.41|0.04|8.44|+|0|None,EMX2|2	REV__chr10:117546099-117548065|141|13.41|0.04|8.44|+|0|None,EMX2|2	MULTI-MSMS	OvCa99_classI_Rep5	1	533.8053588867188	2	533.807845	1065.60114	2.0693	0.0011046	-4.0624	-0.0021685	-1.993	-0.0010639	533.8054560940293	87.137	0.45403	87.137	86.844	87.298	0					29	10	4	0	0	0	0.66704	1	9209	9209		50.025	0.81375	1	1640000	+		45257	15843	37464	37487	48729	48729					0.07096129070555435
QFYPIRTL	8	Unmodified	_QFYPIRTL_					0	0	0			REV__nc|ENSG00000285231|A0A2R8YFM6|OOSP3	REV__nc|ENSG00000285231|A0A2R8YFM6|OOSP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.822265625	2	519.292559	1036.57057	0.77473	0.00040231	2.341	0.0012156	3.1157	0.001618	519.2935839890783	131.2	0.47273	131.2	131.01	131.48	0					12	9	2	0	0	0	0.028476	1	15232	15232		29.15	0	1	50853	+		45258	29204	37465	37488	48730	48730					0.053743506855198575
QFYPTVVYLT	10	Unmodified	_QFYPTVVYLT_					0	0	0		ENST00000449943.5_1_11:64900197-64901072:-|nuORF;nc|ENSG00000162298|Q86TM6-3|SYVN1;ENSG00000162298|ENST00000377190|SYVN1;nc|ENSG00000162298|Q86TM6-2|SYVN1	ENST00000449943.5_1_11:64900197-64901072:-|nuORF	ENST00000449943.5_1_11:64900197-64901072:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	615.8292846679688	2	615.823889	1229.63323	0.98553	0.00060692	4.4242	0.0027246	5.4098	0.0033315	615.8265545245539	80.841	2.0776	78.519	78.131	80.209	-2.3226					126	40	5	0	0	0	0.35465	1	4491	4491		74.255	2.3776	1	2601000			45259	6167	37466	37489	48731	48731					0.02759451963038373
QGAAPRGRA	9	Unmodified	_QGAAPRGRA_					0	0	0			REV__ENST00000498830.5_1_20:62608437-62611350:-|nuORF	REV__ENST00000498830.5_1_20:62608437-62611350:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	441.7608947753906	2	442.246475	882.478397	0.68053	0.00030096	2.9805	0.0013181	3.661	0.0016191	442.24781011675753	58.924	0.53741	58.924	58.655	59.192	0					25	13	3	0	0	0	0.027279	1	5065	5065		71.296	13.484	1	732910	+		45260	26420	37467	37490	48732	48732					0.03245685391846109
QGAEAKKAQL	10	Unmodified	_QGAEAKKAQL_					0	0	0			REV__ENST00000426012.1_1_20:19789888-19790269:+|nuORF	REV__ENST00000426012.1_1_20:19789888-19790269:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	522.2962646484375	2	522.29583	1042.57711	-0.95181	-0.00049713	0.18644	9.7378E-05	-0.76537	-0.00039975	522.2959955759313	29.211	1.8946	29.211	28.588	30.483	0					77	37	5	0	0	0	0.09252	1	1036	1036		115.49	19.304	1	5920500	+		45261	25660	37468	37491	48733	48733					0.057522438462456194
QGAEEHGV	8	Unmodified	_QGAEEHGV_					0	0	0			REV__tr|A0A553SPH4|A0A553SPH4_NIACIATP-dependentClpproteaseATP-bindingsubunitOS=NialliacirculansOX=1397GN=CEQ21_26375PE=3SV=1	REV__tr|A0A553SPH4|A0A553SPH4_NIACIATP-dependentClpproteaseATP-bindingsubunitOS=NialliacirculansOX=1397GN=CEQ21_26375PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	413.2688293457031	2	413.688124	825.361695	0.054547	2.2566E-05	1.2047	0.00049835	1.2592	0.00052092	413.688499865297	41.888	0.34378	41.888	41.724	42.068	0					10	7	2	0	0	0	0.028476	1	2656	2656		38.806	8.3025	1	37939	+		45262	30536	37469	37492	48734	48734					-0.0579709761856293
QGAQRWQP	8	Unmodified	_QGAQRWQP_					0	0	0		ENST00000519074.5_1_8:21996670-21998995:-|nuORF	ENST00000519074.5_1_8:21996670-21998995:-|nuORF	ENST00000519074.5_1_8:21996670-21998995:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.74456787109375	2	485.746308	969.478063	-1.48	-0.00071889	-0.34653	-0.00016833	-1.8265	-0.00088722	485.74599796345893	63.956	0.48026	63.956	63.773	64.253	0					21	11	3	0	0	0	0.028476	1	5819	5819		42.474	10.945	1	1190700			45263	13080	37470	37493	48735	48735					-0.007897343280092173
QGCENQIL	8	Unmodified	_QGCENQIL_					0	0	0			REV__ENST00000503273.1_1_5:176338353-176395858:-|nuORF	REV__ENST00000503273.1_1_5:176338353-176395858:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	453.2825927734375	2	452.713285	903.412016	0.46843	0.00021206	-0.60962	-0.00027598	-0.14119	-6.3918E-05	452.7127977548641	83.221	0.68379	80.558	80.29	80.974	-2.6629					21	13	2	0	0	0	0.028476	1	6915	6915		23.042	7.4007	1	31506	+		45264	17159	37471	37494	48736	48736					-0.043553112850759135
QGDKIYTIT	9	Unmodified	_QGDKIYTIT_					0	0	0			REV__ENSG00000132357|ENST00000254691|CARD6	REV__ENSG00000132357|ENST00000254691|CARD6	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.789306640625	2	519.776939	1037.53933	0.29103	0.00015127	-1.9214	-0.00099872	-1.6304	-0.00084745	520.2773720664018	152.26	0.55025	152.26	152.07	152.62	0					15	13	2	0	0	0	0.027462	1	17812	17812		19.997	0	1	39108	+		45265	19070	37472	37495	48737	48737					0.022057328607616
QGEGGKLRKII	11	Unmodified	_QGEGGKLRKII_					0	0	0		tr|A0A553SSB9|A0A553SSB9_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_02675PE=4SV=1	tr|A0A553SSB9|A0A553SSB9_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_02675PE=4SV=1	tr|A0A553SSB9|A0A553SSB9_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_02675PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	400.2468566894531	3	400.247062	1197.71936	0.8134	0.00032556	-0.72327	-0.00028949	0.090132	3.6075E-05	400.24675032608036	56.071	2.0809	53.267	52.83	54.911	-2.804					98	41	3	0	0	0	0.59615	1	3952	3952		45.022	7.514	1	943420			45266	34357	37473	37496	48738	48738					0.12840456588423876
QGFLTHFL	8	Unmodified	_QGFLTHFL_					0	0	0		ENSG00000070269|ENST00000261556|TMEM260;nc|ENSG00000070269|Q9NX78-2|TMEM260;ENST00000557657.5_1_14:57046563-57079004:+|nuORF;ENST00000557626.5_1_14:57046563-57082746:+|nuORF;nc|ENSG00000070269|Q9NX78-3|TMEM260;TMEM260|p.V584Nfs*14|1|0.31|ENSG00000070269|chr14:56634923-56634936|TGTGGCCAATGAAG/-|frameshift_variant	ENSG00000070269|ENST00000261556|TMEM260	ENSG00000070269|ENST00000261556|TMEM260	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.7591247558594	2	481.758352	961.502152	0.27146	0.00013078	0.39033	0.00018804	0.66179	0.00031882	481.75833741211454	38.208	1.6368	35.282	34.957	36.594	-2.9264					68	32	3	0	0	0	0.7224	1	1498	1498		38.806	6.8513	1	143150			45267	1423	37474	37497	48739	48739					0.01986106105653107
QGFNKLAETL	10	Unmodified	_QGFNKLAETL_					0	0	0		nc|ENSG00000117682|Q86SQ9-3|DHDDS;nc|ENSG00000117682|Q86SQ9-4|DHDDS;ENSG00000117682|ENST00000236342|DHDDS;nc|ENSG00000117682|Q86SQ9-2|DHDDS;ENST00000528557.5_1_1:26759436-26769365:+|nuORF	nc|ENSG00000117682|Q86SQ9-3|DHDDS	nc|ENSG00000117682|Q86SQ9-3|DHDDS	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.8031616210938	2	560.803488	1119.59242	1.6271	0.00091251	-1.4809	-0.00083048	0.14627	8.2027E-05	560.802565252688	113.47	2.0685	112.03	111.61	113.67	-1.4461					95	40	3	0	0	0	0.73378	1	10565	10565		26.693	0.62953	1	624400			45268	3273	37475	37498	48740	48740					0.03741110643431966
QGGISEEEVI	10	Unmodified	_QGGISEEEVI_					0	0	0			REV__tr|A0A553SK61|A0A553SK61_NIACIendopeptidaseLaOS=NialliacirculansOX=1397GN=lonBPE=3SV=1	REV__tr|A0A553SK61|A0A553SK61_NIACIendopeptidaseLaOS=NialliacirculansOX=1397GN=lonBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.8102416992188	2	530.761486	1059.50842	-0.1411	-7.4893E-05	2.71	0.0014383	2.5689	0.0013634	530.7632982704988	80.911	0.61975	78.589	78.286	78.905	-2.3226					16	11	2	0	0	0	0.026659	1	4488	4488		45.972	0	1	18463	+		45269	30083	37476	37499	48741	48741					-0.01895465244137995
QGGPRGWSQAK	11	Unmodified	_QGGPRGWSQAK_					0	0	0			REV__ENST00000537834.5_1_19:40745726-40771198:-|nuORF	REV__ENST00000537834.5_1_19:40745726-40771198:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	585.7079467773438	2	586.301978	1170.5894	-1.3685	-0.00080237	3.9272	0.0023025	2.5587	0.0015002	586.3041523448074	53.88	1.2789	50.633	50.314	51.593	-3.2474					55	24	3	0	0	0	0.025487	1	3415	3415		38.754	17.807	1	268160	+		45270	27315	37477	37500	48742	48742					0.01093280309282818
QGGQARTPIL	10	Unmodified	_QGGQARTPIL_					0	0	0			REV__ENST00000553343.5_1_14:24910101-24911445:-|nuORF	REV__ENST00000553343.5_1_14:24910101-24911445:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	520.7980346679688	2	520.795998	1039.57744	0.11054	5.7571E-05	3.9178	0.0020404	4.0283	0.0020979	520.7978671803645	160.11	0.95288	160.11	159.86	160.81	0					42	18	4	0	0	0	0.48198	1	18758	18758		56.721	3.3696	1	504620	+		45271	27510	37478	37501	48743	48743					0.05923663566090909
QGGQFAADL	9	Unmodified	_QGGQFAADL_					0	0	0		tr|A0A553SSV0|A0A553SSV0_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03775PE=3SV=1	tr|A0A553SSV0|A0A553SSV0_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03775PE=3SV=1	tr|A0A553SSV0|A0A553SSV0_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03775PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	454.2366027832031	2	453.719424	905.424296	-0.58771	-0.00026665	0.68428	0.00031047	0.096572	4.3817E-05	453.7196223111279	49.964	1.1399	49.964	49.723	50.863	0					49	25	3	0	0	0	0.027441	1	3833	3833		32.812	2.3088	1	2389000			45272	34421	37479	37502	48744	48744					-0.03219951550397582
QGGQLDPAML	10	Unmodified	_QGGQLDPAML_					0	0	0		ENST00000265044.6_1_3:156260269-156260335:-|nuORF	ENST00000265044.6_1_3:156260269-156260335:-|nuORF	ENST00000265044.6_1_3:156260269-156260335:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7905883789062	2	515.255317	1028.49608	1.9022	0.0009801	-1.4416	-0.00074281	0.46053	0.00023729	515.2544091757186	118	0.88286	118	117.56	118.44	0					24	18	2	0	0	0	0.026871	1	13573	13573		37.159	0	1	287550			45273	9941	37480	37503	48745	48745					-0.01702780188156794
QGGVARRLAL	10	Unmodified	_QGGVARRLAL_					0	0	0			REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.781005859375	2	520.819807	1039.62506	-1.1739	-0.00061139	-3.6594	-0.0019059	-4.8333	-0.0025173	520.8176069909678	66.263	0.77969	62.772	62.516	63.295	-3.4902					24	15	2	0	0	0	0.026956	1	4874	4874		14.137	0	1	86606	+		45274	18712	37481	37504	48746	48746					0.10683362556937936
QGGVDVVLRT	10	Unmodified	_QGGVDVVLRT_					0	0	0		nc|ENSG00000178965|Q5RHP9-2|ERICH3;ENST00000433746.2_1_1:75036803-75045091:-|nuORF;ENSG00000178965|ENST00000326665|ERICH3	nc|ENSG00000178965|Q5RHP9-2|ERICH3	nc|ENSG00000178965|Q5RHP9-2|ERICH3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.7887573242188	2	522.29583	1042.57711	-2.4492	-0.0012792	0.73818	0.00038555	-1.711	-0.00089363	522.2960530644701	49.333	1.1435	46.192	45.728	46.871	-3.1416					42	21	3	0	0	0	0.026674	1	2829	2829		32.751	7.1765	1	114590			45275	7787	37482	37505	48747	48747					0.057522438462456194
QGGVDVVLRT	10	Unmodified	_QGGVDVVLRT_					0	0	0		nc|ENSG00000178965|Q5RHP9-2|ERICH3;ENST00000433746.2_1_1:75036803-75045091:-|nuORF;ENSG00000178965|ENST00000326665|ERICH3	nc|ENSG00000178965|Q5RHP9-2|ERICH3	nc|ENSG00000178965|Q5RHP9-2|ERICH3	MULTI-MATCH	OvCa99_classI_Rep5	1		2	522.29583	1042.57711	-0.23765	-0.00012413	3.6891	0.0019268	3.4515	0.0018027	522.799243569151	46.357	0.74288	46.357	45.844	46.587	0	0.16216	0.0031377	NaN	32.751	29	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105920			45276	7787	37482	37505							0.057522438462456194
QGGVDVVLRT	10	Unmodified	_QGGVDVVLRT_					0	0	0		nc|ENSG00000178965|Q5RHP9-2|ERICH3;ENST00000433746.2_1_1:75036803-75045091:-|nuORF;ENSG00000178965|ENST00000326665|ERICH3	nc|ENSG00000178965|Q5RHP9-2|ERICH3	nc|ENSG00000178965|Q5RHP9-2|ERICH3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	522.29583	1042.57711	-0.512	-0.00026742	-0.56106	-0.00029304	-1.0731	-0.00056046	522.2951699543424	48.795	1.0907	46.035	45.679	46.769	-2.7603	-0.15937	-0.001302	NaN	32.751	31	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34585			45277	7787	37482	37505							0.057522438462456194
QGHANHGF	8	Unmodified	_QGHANHGF_					0	0	0		ENSG00000125845|ENST00000378827|BMP2	ENSG00000125845|ENST00000378827|BMP2	ENSG00000125845|ENST00000378827|BMP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	433.5482482910156	2	434.196451	866.378349	-0.51947	-0.00022555	-1.2096	-0.00052521	-1.7291	-0.00075076	434.1959241876588	34.421	1.4521	34.421	34.209	35.661	0					67	30	5	0	0	0	0.028476	1	1638	1638		26.796	0	1	3657700			45278	3745	37483	37506	48748	48748					-0.06018551941951955
QGHGTLSL	8	Unmodified	_QGHGTLSL_					0	0	0			REV__nc|ENSG00000276644|Q9UI36-3|DACH1	REV__nc|ENSG00000276644|Q9UI36-3|DACH1	MULTI-MSMS	OvCa9_classI_Rep4_	4	406.7179260253906	2	406.716685	811.418816	0.82006	0.00033353	-0.57108	-0.00023227	0.24898	0.00010127	406.7163299467745	52.585	1.6673	49.377	49.094	50.762	-3.208					77	32	4	0	0	0	0.59148	1	3172	3172		65.803	2.4969	1	726540	+		45279	23630	37484	37507	48749	48749					0.0055636965781786785
QGHWIIKTK	9	Unmodified	_QGHWIIKTK_					0	0	0		nc|ENSG00000177842|Q6ZNG0-2|ZNF620;ENSG00000177842|ENST00000314529|ZNF620	nc|ENSG00000177842|Q6ZNG0-2|ZNF620	nc|ENSG00000177842|Q6ZNG0-2|ZNF620	MULTI-SECPEP	OvCa9_classI_Rep4_	4	556.2970581054688	2	555.824558	1109.63456	-0.5153	-0.00028642	-4.0181	-0.0022334	-4.5334	-0.0025198	555.82229156817	48.635	0.8331	45.528	45.296	46.129	-3.1077					19	15	2	0	0	0	0.027462	1	2733	2733		30.318	12.953	1	35488			45280	7715	37485	37508	48750	48750					0.08413130842473038
QGIHTRLDVH	10	Unmodified	_QGIHTRLDVH_					0	0	0		ENST00000481510.1_1_2:132515879-132524290:+|nuORF	ENST00000481510.1_1_2:132515879-132524290:+|nuORF	ENST00000481510.1_1_2:132515879-132524290:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	588.3171997070312	2	588.317628	1174.6207	-0.86515	-0.00050898	0.29962	0.00017627	-0.56553	-0.00033271	588.3178156551718	47.322	1.787	44.612	44.142	45.929	-2.7097					114	35	4	0	0	0	0.53885	1	2856	2856		49.442	5.0644	1	1251100			45281	12546	37486	37509	48751	48751					0.04037853343356801
QGIRWIVSI	9	Unmodified	_QGIRWIVSI_					0	0	0			REV__ENST00000432347.6_2_4:128996092-128996137:+|nuORF	REV__ENST00000432347.6_2_4:128996092-128996137:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.8211059570312	2	536.319109	1070.62366	0.13251	7.1066E-05	2.8012	0.0015023	2.9337	0.0015734	536.3207584010987	57.361	1.0704	57.361	56.538	57.609	0					34	24	3	0	0	0	0.027462	1	4805	4805		26.693	0	1	646290	+		45282	25734	37487	37510	48752	48752					0.09117728468186215
QGKKGKLITN	10	Unmodified	_QGKKGKLITN_					0	0	0			REV__tr|A0A7D6ZJY7|A0A7D6ZJY7_9CLOTthiaminediphosphokinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10440PE=4SV=1	REV__tr|A0A7D6ZJY7|A0A7D6ZJY7_9CLOTthiaminediphosphokinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10440PE=4SV=1	MSMS	OvCa9_classI_Rep2	2	543.834716796875	2	543.835123	1085.65569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.377	1	27.667	27.167	28.167	-2.7097								0	0	0	0.099787	1	822	822		93.143	2.5424	1		+		45283	32094	37488	37511	48753	48753					0.11629096151318663
QGKNYNLK	8	Unmodified	_QGKNYNLK_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-SECPEP	OvCa9_classI_Rep2	2	482.27960205078125	2	482.764166	963.513779	-0.22412	-0.0001082	-2.8655	-0.0013834	-3.0896	-0.0014916	482.7627165385287	106.93	1.0915	106.62	106.03	107.12	-0.30836					34	21	2	0	0	0	0.028476	1	10005	10005		27.882	0	1	18131			45284	2189	37489	37512	48754	48754					0.030563031289830178
QGKPEVLGG	9	Unmodified	_QGKPEVLGG_					0	0	0		nc|ENSG00000107949|Q9P287-4|BCCIP;nc|ENSG00000107949|Q9P287-2|BCCIP	nc|ENSG00000107949|Q9P287-4|BCCIP	nc|ENSG00000107949|Q9P287-4|BCCIP	MULTI-SECPEP	OvCa9_classI_Rep3	3	442.2724914550781	2	442.745442	883.476331	-0.43384	-0.00019208	0.0012102	5.358E-07	-0.43263	-0.00019155	442.745288316762	96.977	0.92547	95.149	94.775	95.701	-1.8286					23	17	2	0	0	0	0.027392	1	6428	6428		63.306	20.91	1	15406			45285	14947	37490	37513	48755	48755					0.02993211863383749
QGKPQRGRAKI	11	Unmodified	_QGKPQRGRAKI_					0	0	0		ENSG00000110318|ENST00000263468|CEP126	ENSG00000110318|ENST00000263468|CEP126	ENSG00000110318|ENST00000263468|CEP126	MULTI-SECPEP	OvCa9_classI_Rep2	2	414.571044921875	3	413.586189	1237.73674	-0.32736	-0.00013539	3.6808	0.0015223	3.3535	0.001387	413.5875917755675	67.802	1.582	65.141	64.594	66.176	-2.661					79	31	4	0	0	0	0.025612	1	5286	5286		43.651	19.419	1	213570			45286	2766	37491	37514	48756	48756					0.1273779691407526
QGKVGSQDILK	11	Unmodified	_QGKVGSQDILK_					0	0	0		ENST00000496144.5_1_8:100515159-100589873:+|nuORF	ENST00000496144.5_1_8:100515159-100589873:+|nuORF	ENST00000496144.5_1_8:100515159-100589873:+|nuORF	MSMS	OvCa99_classI_Rep5	1	586.8344116210938	2	586.83532	1171.65609	NaN	NaN	NaN	NaN	NaN	NaN	NaN	23.998	1	23.998	23.498	24.498	0								0	0	0	0.19474	1	397	397		18.262	0.79408	1				45287	12783	37492	37515	48757	48757					0.07712471080503747
QGLHGWGAFT	10	Unmodified	_QGLHGWGAFT_					0	0	0		ENST00000556980.5_1_14:104177876-104180491:-|nuORF	ENST00000556980.5_1_14:104177876-104180491:-|nuORF	ENST00000556980.5_1_14:104177876-104180491:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	537.2637329101562	2	537.261791	1072.50903	1.5965	0.00085776	2.9437	0.0015815	4.5402	0.0024393	537.2632206474979	106.63	1.7205	105.36	105.01	106.73	-1.267					78	33	4	0	0	0	0.72319	1	7524	7524		27.882	1.1893	1	642900			45288	13677	37493	37516	48758	48758					-0.024325810137497683
QGLINVISFSF	11	Unmodified	_QGLINVISFSF_					0	0	0			REV__ENST00000402907.1_1_6:143664004-143664346:+|nuORF	REV__ENST00000402907.1_1_6:143664004-143664346:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	408.89080810546875	3	408.892284	1223.65502	0.92327	0.00037752	-2.4295	-0.00099342	-1.5063	-0.00061591	408.8911995972358	21.913	1.2709	20.574	20.321	21.592	-1.3386					60	27	3	0	0	0	0.46188	1	231	231		56.632	15.206	1	174250	+		45289	25421	37494	37517	48759	48759					0.0521425671158795
QGLKISIIGD	10	Unmodified	_QGLKISIIGD_					0	0	0		tr|A0A553SP85|A0A553SP85_NIACIAspartatecarbamoyltransferaseOS=NialliacirculansOX=1397GN=pyrBPE=3SV=1	tr|A0A553SP85|A0A553SP85_NIACIAspartatecarbamoyltransferaseOS=NialliacirculansOX=1397GN=pyrBPE=3SV=1	tr|A0A553SP85|A0A553SP85_NIACIAspartatecarbamoyltransferaseOS=NialliacirculansOX=1397GN=pyrBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.829345703125	2	522.308406	1042.60226	-0.64432	-0.00033654	0.43963	0.00022962	-0.20469	-0.00010691	522.3082611420436	105.69	1.7279	103.67	103.2	104.93	-2.0161					75	33	3	0	0	0	0.026494	1	9746	9746		67.494	16.158	1	155560			45290	34016	37495	37518	48760	48760					0.08266298648845805
QGLKISIIGD	10	Unmodified	_QGLKISIIGD_					0	0	0		tr|A0A553SP85|A0A553SP85_NIACIAspartatecarbamoyltransferaseOS=NialliacirculansOX=1397GN=pyrBPE=3SV=1	tr|A0A553SP85|A0A553SP85_NIACIAspartatecarbamoyltransferaseOS=NialliacirculansOX=1397GN=pyrBPE=3SV=1	tr|A0A553SP85|A0A553SP85_NIACIAspartatecarbamoyltransferaseOS=NialliacirculansOX=1397GN=pyrBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.829345703125	2	522.308406	1042.60226	-1.8154	-0.00094821	-2.6137	-0.0013652	-4.4291	-0.0023134	522.3075643165539	107.25	0.52666	105.37	104.91	105.43	-1.8785					11	9	2	0	0	0	0.026494	1	9746	9746		67.494	24.629	1	7493.6			45291	34016	37495	37518	48761	48761					0.08266298648845805
QGLKISIIGD	10	Unmodified	_QGLKISIIGD_					0	0	0		tr|A0A553SP85|A0A553SP85_NIACIAspartatecarbamoyltransferaseOS=NialliacirculansOX=1397GN=pyrBPE=3SV=1	tr|A0A553SP85|A0A553SP85_NIACIAspartatecarbamoyltransferaseOS=NialliacirculansOX=1397GN=pyrBPE=3SV=1	tr|A0A553SP85|A0A553SP85_NIACIAspartatecarbamoyltransferaseOS=NialliacirculansOX=1397GN=pyrBPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	522.308406	1042.60226	-0.31592	-0.00016501	-0.13338	-6.9664E-05	-0.4493	-0.00023467	522.3081438618946	104.13	2.0297	103.56	103.03	105.06	-0.57639	0.051625	-9.1933E-05	NaN	67.494	76	40	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115290			45292	34016	37495	37518							0.08266298648845805
QGLKISIIGD	10	Unmodified	_QGLKISIIGD_					0	0	0		tr|A0A553SP85|A0A553SP85_NIACIAspartatecarbamoyltransferaseOS=NialliacirculansOX=1397GN=pyrBPE=3SV=1	tr|A0A553SP85|A0A553SP85_NIACIAspartatecarbamoyltransferaseOS=NialliacirculansOX=1397GN=pyrBPE=3SV=1	tr|A0A553SP85|A0A553SP85_NIACIAspartatecarbamoyltransferaseOS=NialliacirculansOX=1397GN=pyrBPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	522.308406	1042.60226	0.29648	0.00015486	-0.72704	-0.00037974	-0.43055	-0.00022488	522.3078609797187	104.98	1.924	103.63	103.06	104.98	-1.3482	0.12869	-0.00071208	NaN	67.494	84	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166910			45293	34016	37495	37518							0.08266298648845805
QGLQENIHE	9	Unmodified	_QGLQENIHE_					0	0	0		ENST00000480336.1_1_1:32950727-32950793:+|nuORF	ENST00000480336.1_1_1:32950727-32950793:+|nuORF	ENST00000480336.1_1_1:32950727-32950793:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.8134765625	2	534.259445	1066.50434	-0.42473	-0.00022692	1.0997	0.00058751	0.67493	0.00036059	534.2595293942222	58.944	0.8008	58.944	58.613	59.414	0					40	20	3	0	0	0	0.027453	1	5012	5012		54.776	12.38	1	931700			45294	12523	37496	37519	48762	48762					-0.026255099472109578
QGLVVDVPALL	11	Unmodified	_QGLVVDVPALL_					0	0	0		nc|ENSG00000148384|Q9NRR6-2|INPP5E;ENSG00000148384|ENST00000371712|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	nc|ENSG00000148384|Q9NRR6-2|INPP5E	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.8160400390625	2	562.339707	1122.66486	0.18217	0.00010244	-2.8502	-0.0016028	-2.6681	-0.0015004	562.3380108987279	29.661	0.39936	29.661	29.536	29.935	0					15	7	3	0	0	0	0.025806	1	1085	1085		31.53	1.0262	1	99398			45295	5407	37497	37520	48763	48763					0.10843444716988415
QGNADYPDAYD	11	Unmodified	_QGNADYPDAYD_					0	0	0			REV__SHE|p.K211Nfs*27|1|0.09|ENSG00000169291|chr1:154499200-154499200|G/-|frameshift_variant	REV__SHE|p.K211Nfs*27|1|0.09|ENSG00000169291|chr1:154499200-154499200|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	614.7388305664062	2	614.741282	1227.46801	-2.0203	-0.001242	-2.212	-0.0013598	-4.2323	-0.0026018	614.7404537850678	118.46	2.2258	118.31	117.89	120.11	-0.14755					114	44	5	0	0	0	0.69455	1	11411	11411		31.53	3.6476	1	750750	+		45296	29359	37498	37521	48764	48764					-0.1366243163456602
QGNELEPLN	9	Unmodified	_QGNELEPLN_					0	0	0		nc|ENSG00000091831|P03372-2|ESR1;ENSG00000091831|ENST00000206249|ESR1;ESR1-MTHFD1L|2|fusion;ESR1-MTHFD1L|1|fusion	nc|ENSG00000091831|P03372-2|ESR1	nc|ENSG00000091831|P03372-2|ESR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.81256103515625	2	507.248546	1012.48254	-0.82223	-0.00041707	2.7906	0.0014155	1.9684	0.00099845	507.2485143251122	74.112	0.75758	70.881	70.579	71.337	-3.2308					33	15	3	0	0	0	0.027462	1	5745	5745		27.882	4.8398	1	56791			45297	1876	37499	37522	48765	48765					-0.02320314695759862
QGNKAVDAAL	10	Unmodified	_QGNKAVDAAL_					0	0	0			REV__tr|A0A553SSS3|A0A553SSS3_NIACIBiotin-independentmalonatedecarboxylasesubunitbetaOS=NialliacirculansOX=1397GN=mdcDPE=4SV=1	REV__tr|A0A553SSS3|A0A553SSS3_NIACIBiotin-independentmalonatedecarboxylasesubunitbetaOS=NialliacirculansOX=1397GN=mdcDPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.76824951171875	2	493.766906	985.519259	1.3259	0.00065468	-2.1019	-0.0010379	-0.77606	-0.00038319	493.7658974298156	67.896	1.3245	64.405	63.938	65.262	-3.4902					78	26	5	0	0	0	0.3094	1	5054	5054		79.713	0	1	6506900	+		45298	30871	37500	37523	48766	48766					0.02591981920784292
QGPEPQGRLLH	11	Unmodified	_QGPEPQGRLLH_					0	0	0			REV__ENST00000374694.2_1_10:35928201-35929404:-|nuORF	REV__ENST00000374694.2_1_10:35928201-35929404:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	411.2254333496094	3	411.222916	1230.64692	1.0432	0.00042897	2.0244	0.0008325	3.0676	0.0012615	411.2237042568663	56.983	0.86438	56.983	56.744	57.609	0					53	19	4	0	0	0	0.70587	1	4784	4784		27.644	0.59661	1	3921400	+		45299	25065	37501	37524	48767	48767					0.0408212251486475
QGPKGDRGVPG	11	Unmodified	_QGPKGDRGVPG_					0	0	0		ENSG00000114270|ENST00000681320|COL7A1;nc|ENSG00000114270|Q02388-2|COL7A1;ENST00000487017.5_1_3:48609337-48621784:-|nuORF	ENSG00000114270|ENST00000681320|COL7A1	ENSG00000114270|ENST00000681320|COL7A1	MULTI-MSMS	OvCa99_classI_Rep5	1	534.286376953125	2	534.283254	1066.55196	0.90057	0.00048116	1.9718	0.0010535	2.8724	0.0015347	534.284212437697	153.37	2.6517	153.37	152.52	155.17	0					122	56	3	0	0	0	0.7046	1	17972	17972		28.081	3.8787	1	129630			45300	3016	37502	37525	48768	48768					0.021341890436588073
QGPLLAVFGEV	11	Unmodified	_QGPLLAVFGEV_					0	0	0			REV__ENST00000482462.1_1_7:540505-540673:-|nuORF	REV__ENST00000482462.1_1_7:540505-540673:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.2952880859375	2	565.316232	1128.61791	0.49638	0.00028061	0.75364	0.00042604	1.25	0.00070665	565.3169335461552	101.82	0.38779	101.82	101.69	102.08	0					14	6	3	0	0	0	0.025912	1	11348	11348		36.447	7.2767	1	495250	+		45301	26504	37503	37526	48769	48769					0.0587458516586139
QGPLLAVFGEV	11	Unmodified	_QGPLLAVFGEV_					0	0	0			REV__ENST00000482462.1_1_7:540505-540673:-|nuORF	REV__ENST00000482462.1_1_7:540505-540673:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	565.316232	1128.61791	-0.87758	-0.00049611	-3.2576	-0.0018416	-4.1351	-0.0023377	565.3136153600891	102.89	0.98603	102.21	101.79	102.77	-0.68459	0.19729	-0.0024923	NaN	22.58	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83023	+		45302	26504	37503	37526							0.0587458516586139
QGPQLMEHI	9	Unmodified	_QGPQLMEHI_					0	0	0			REV__ENSG00000128335|ENST00000358502|APOL2	REV__ENSG00000128335|ENST00000358502|APOL2	MULTI-MSMS	OvCa9_classI_Rep3	3	526.7622680664062	2	526.763309	1051.51206	0.69507	0.00036614	-1.1514	-0.0006065	-0.45629	-0.00024036	526.7626305368649	121.64	1.7818	120.61	120.22	122	-1.0286					87	33	4	0	0	0	0.38529	2	9306	9306;9347		53.351	7.723	1	598650	+		45303	18852	37504	37527	48770;48771	48770					-0.011630739512838772
QGQGRHRR	8	Unmodified	_QGQGRHRR_					0	0	0			REV__nc|ENSG00000067840|Q76G19-2|PDZD4	REV__nc|ENSG00000067840|Q76G19-2|PDZD4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.7895812988281	2	497.773723	993.532892	-1.2226	-0.00060856	3.6864	0.001835	2.4639	0.0012265	497.7754514741392	44.786	0.71461	41.747	41.464	42.178	-3.0385					26	13	2	0	0	0	0.028476	1	2290	2290		31.955	0	1	143130	+		45304	16841	37505	37528	48772	48772					0.03586697263267524
QGQGRHRR	8	Unmodified	_QGQGRHRR_					0	0	0			REV__nc|ENSG00000067840|Q76G19-2|PDZD4	REV__nc|ENSG00000067840|Q76G19-2|PDZD4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	497.773723	993.532892	0.10013	4.9842E-05	2.2861	0.001138	2.3862	0.0011878	497.77475584401094	44.568	0.84565	41.858	41.502	42.348	-2.7097	0.055688	-0.00090743	NaN	31.955	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30968	+		45305	16841	37505	37528							0.03586697263267524
QGQQKWHGPS	10	Unmodified	_QGQQKWHGPS_					0	0	0			REV__nc|ENSG00000088876|Q6P1L6-2|ZNF343	REV__nc|ENSG00000088876|Q6P1L6-2|ZNF343	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.2525634765625	2	576.780879	1151.5472	0.87747	0.00050611	-1.1102	-0.00064032	-0.23269	-0.00013421	577.2800084100347	109.55	0.22038	109.55	109.37	109.59	0					7	4	2	0	0	0	0.026606	1	12397	12397		29.17	0	1	58854	+		45306	17185	37506	37529	48773	48773					-0.022506950991100894
QGQRGVLPS	9	Unmodified	_QGQRGVLPS_					0	0	0		ENST00000525070.1_1_11:409841-409994:-|nuORF;ENST00000530683.5_1_11:407853-409994:-|nuORF;ENST00000528698.5_1_11:407426-409994:-|nuORF	ENST00000525070.1_1_11:409841-409994:-|nuORF	ENST00000525070.1_1_11:409841-409994:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.2615661621094	2	471.261791	940.509028	-0.33325	-0.00015705	-0.25916	-0.00012213	-0.59241	-0.00027918	471.2615896536289	42.834	1.1541	39.827	39.539	40.693	-3.0074					55	21	3	0	0	0	0.48324	1	2043	2043		44.117	8.4985	1	1011100			45307	13180	37507	37530	48774	48774					0.03639418986244891
QGRDLTDVM	9	Unmodified	_QGRDLTDVM_					0	0	0		ENST00000452075.7_1_10:43015804-43015918:-|nuORF	ENST00000452075.7_1_10:43015804-43015918:-|nuORF	ENST00000452075.7_1_10:43015804-43015918:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.22021484375	2	517.750398	1033.48624	0.54764	0.00028354	0.44888	0.00023241	0.99653	0.00051595	517.7503493036538	157.75	0.40814	157.75	157.55	157.96	0					18	7	3	0	0	0	0.027462	1	18497	18497		23.042	0	1	54210			45308	12050	37508	37531	48775	48775					-0.02915968193565277
QGRLISLYL	9	Unmodified	_QGRLISLYL_					0	0	0			REV__ENST00000485599.5_1_22:29138272-29141477:+|nuORF	REV__ENST00000485599.5_1_22:29138272-29141477:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8162841796875	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.61208	1	11364	11364		30.504	3.8107	1	178650	+		45309	26565	37509	37532	48776	48776					0.09498308748311501
QGRRPQVTMGF	11	Unmodified	_QGRRPQVTMGF_					0	0	0		ENST00000502720.1_1_4:669926-670028:+|nuORF	ENST00000502720.1_1_4:669926-670028:+|nuORF	ENST00000502720.1_1_4:669926-670028:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	638.6951293945312	2	638.832588	1275.65062	-0.78535	-0.00050171	-3.501	-0.0022365	-4.2863	-0.0027382	638.8303649347436	44.236	0.96141	41.228	40.989	41.951	-3.0074					45	18	3	0	0	0	0.025861	1	2261	2261		37.812	4.9991	1	93712			45310	12853	37510	37533	48777	48777					0.023824690170158647
QGRRPQVTMGF	11	Unmodified	_QGRRPQVTMGF_					0	0	0		ENST00000502720.1_1_4:669926-670028:+|nuORF	ENST00000502720.1_1_4:669926-670028:+|nuORF	ENST00000502720.1_1_4:669926-670028:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	638.832588	1275.65062	-0.46864	-0.00029939	-3.9446	-0.00252	-4.4133	-0.0028193	638.829725455492	43.968	0.44833	41.258	41.054	41.502	-2.7097	0.014877	-0.00050448	NaN	37.812	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23276			45311	12853	37510	37533							0.023824690170158647
QGRVFVKVN	9	Unmodified	_QGRVFVKVN_					0	0	0		ENSG00000141560|ENST00000269373|FN3KRP	ENSG00000141560|ENST00000269373|FN3KRP	ENSG00000141560|ENST00000269373|FN3KRP	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.8189697265625	2	523.808908	1045.60326	0.57781	0.00030266	2.2822	0.0011954	2.86	0.0014981	523.8099455364376	81.52	1.4463	79.872	79.514	80.961	-1.6485					59	27	3	0	0	0	0.027462	1	6966	6966		10.866	4.5529	1	119070			45312	4927	37511	37534	48778	48778					0.08228557808365622
QGRVFVKVN	9	Unmodified	_QGRVFVKVN_					0	0	0		ENSG00000141560|ENST00000269373|FN3KRP	ENSG00000141560|ENST00000269373|FN3KRP	ENSG00000141560|ENST00000269373|FN3KRP	MULTI-MATCH	OvCa9_classI_Rep3	3		2	523.808908	1045.60326	-1.2104	-0.000634	3.9058	0.0020459	2.6954	0.0014119	523.8107259571893	82.38	1.5251	80.084	79.785	81.311	-2.2963	0.13421	0.00057688	NaN	10.866	57	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172750			45313	4927	37511	37534							0.08228557808365622
QGRVFVKVN	9	Unmodified	_QGRVFVKVN_					0	0	0		ENSG00000141560|ENST00000269373|FN3KRP	ENSG00000141560|ENST00000269373|FN3KRP	ENSG00000141560|ENST00000269373|FN3KRP	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	523.808908	1045.60326	-0.92127	-0.00048257	3.9802	0.0020848	3.0589	0.0016023	523.8107885141441	82.576	1.6089	79.893	79.538	81.147	-2.6829	-0.056673	0.00065483	NaN	10.866	58	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135840			45314	4927	37511	37534							0.08228557808365622
QGSVASFKLR	10	Unmodified	_QGSVASFKLR_					0	0	0		ENST00000551251.1_1_12:117273806-117290307:+|nuORF	ENST00000551251.1_1_12:117273806-117290307:+|nuORF	ENST00000551251.1_1_12:117273806-117290307:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	546.81005859375	2	546.811648	1091.60874	-0.3367	-0.00018411	-0.7984	-0.00043657	-1.1351	-0.00062068	546.811268925944	77.282	4.1237	75.493	75.051	79.174	-1.7894					214	80	5	0	0	0	0.45822	1	6484	6484		60.118	5.3959	1	5234200			45315	13598	37512	37535	48779	48779					0.066602366001689
QGSVPGEGH	9	Unmodified	_QGSVPGEGH_					0	0	0			REV__ENST00000345125.7_1_8:11710176-11718921:-|nuORF	REV__ENST00000345125.7_1_8:11710176-11718921:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	434.20172119140625	2	434.201399	866.388245	1.6432	0.00071349	2.5973	0.0011278	4.2405	0.0018412	434.20235699405873	129.11	2.4152	127.66	126.27	128.68	-1.4565					81	47	4	0	0	0	0.61208	1	12402	12402		30.504	2.6214	1	260680	+		45316	24690	37513	37536	48780	48780					-0.050294087272277466
QGSWPELWGY	10	Unmodified	_QGSWPELWGY_					0	0	0			REV__ENSG00000156413|ENST00000318336|FUT6	REV__ENSG00000156413|ENST00000318336|FUT6	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.7835693359375	2	611.780013	1221.54547	0.52313	0.00032004	1.4011	0.00085717	1.9242	0.0011772	611.7809539444518	56.794	1.9791	53.449	53.02	54.999	-3.3449					106	38	5	0	0	0	0.72142	1	3694	3694		16.473	0	1	1519200	+		45317	20476	37514	37537	48781	48781					-0.05643748907709778
QGTAIPQL	8	Unmodified	_QGTAIPQL_					0	0	0			REV__ENSG00000147234|ENST00000683843|FRMPD3	REV__ENSG00000147234|ENST00000683843|FRMPD3	MULTI-MSMS	OvCa99_classI_Rep5	1	414.2350158691406	2	414.23471	826.454868	-0.47886	-0.00019836	0.48642	0.00020149	0.0075551	3.1296E-06	414.23485305276495	43.758	1.9748	43.758	43.521	45.496	0					69	44	4	0	0	0	0.53531	1	2902	2902		73.975	0	1	7601400	+		45318	20054	37515	37538	48782	48782					0.03469826834657397
QGTLRPALL	9	Unmodified	_QGTLRPALL_					0	0	0		ENST00000564295.1_1_16:56691699-56691999:+|nuORF;ENST00000334350.6_1_16:56691630-56693012:+|nuORF	ENST00000564295.1_1_16:56691699-56691999:+|nuORF	ENST00000564295.1_1_16:56691699-56691999:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.7989196777344	2	484.798009	967.581465	0.089874	4.3571E-05	-0.69983	-0.00033928	-0.60995	-0.0002957	484.79781846303956	98.297	1.9447	95.919	95.47	97.414	-2.3786					88	37	5	0	0	0	0.42676	1	8723	8723		49.442	0	1	1577700			45319	10479	37516	37539	48783	48783					0.09637753059791976
QGVKAVKIGIP	11	Unmodified	_QGVKAVKIGIP_					0	0	0		tr|A0A7D6VRB7|A0A7D6VRB7_9CLOTV-typeATPsynthasealphachainOS=ClostridiumintestinaleOX=36845GN=atpAPE=3SV=1	tr|A0A7D6VRB7|A0A7D6VRB7_9CLOTV-typeATPsynthasealphachainOS=ClostridiumintestinaleOX=36845GN=atpAPE=3SV=1	tr|A0A7D6VRB7|A0A7D6VRB7_9CLOTV-typeATPsynthasealphachainOS=ClostridiumintestinaleOX=36845GN=atpAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	555.3009033203125	2	555.355691	1108.69683	-0.92929	-0.00051609	0.2256	0.00012529	-0.70369	-0.0003908	555.3555970294456	75.154	2.9001	72.743	71.252	74.152	-2.4106					95	57	2	0	0	0	0.025496	1	3612	3612		32.812	0	1	23565			45320	34912	37517	37540	48784	48784					0.14682857190791765
QGVKAVKIGIP	11	Unmodified	_QGVKAVKIGIP_					0	0	0		tr|A0A7D6VRB7|A0A7D6VRB7_9CLOTV-typeATPsynthasealphachainOS=ClostridiumintestinaleOX=36845GN=atpAPE=3SV=1	tr|A0A7D6VRB7|A0A7D6VRB7_9CLOTV-typeATPsynthasealphachainOS=ClostridiumintestinaleOX=36845GN=atpAPE=3SV=1	tr|A0A7D6VRB7|A0A7D6VRB7_9CLOTV-typeATPsynthasealphachainOS=ClostridiumintestinaleOX=36845GN=atpAPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	555.355691	1108.69683	0.11865	6.5892E-05	-0.79693	-0.00044258	-0.67828	-0.00037669	555.3549648545863	75.001	2.3922	73.03	71.798	74.191	-1.9711	0.14312	-0.00066724	NaN	37.812	66	45	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19170			45321	34912	37517	37540							0.14682857190791765
QGVNGILGIV	10	Unmodified	_QGVNGILGIV_					0	0	0			REV__tr|A0A7D6VV29|A0A7D6VV29_9CLOT3-oxoacyl-[acyl-carrier-protein]reductaseOS=ClostridiumintestinaleOX=36845GN=fabGPE=3SV=1	REV__tr|A0A7D6VV29|A0A7D6VV29_9CLOT3-oxoacyl-[acyl-carrier-protein]reductaseOS=ClostridiumintestinaleOX=36845GN=fabGPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	485.28839111328125	2	485.290017	968.565481	0.67971	0.00032986	-3.7324	-0.0018113	-3.0527	-0.0014814	485.2880610480828	30.452	1.281	27.743	27.557	28.838	-2.7097					46	25	3	0	0	0	0.7759	1	852	852		21.96	1.013	1	148120	+		45322	31704	37518	37541	48785	48785					0.07994046822886958
QGVRKQKK	8	Unmodified	_QGVRKQKK_					0	0	0		tr|A0A553SII7|A0A553SII7_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14885PE=3SV=1	tr|A0A553SII7|A0A553SII7_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14885PE=3SV=1	tr|A0A553SII7|A0A553SII7_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14885PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.32183837890625	2	486.309075	970.603597	0.90838	0.00044175	3.3241	0.0016165	4.2325	0.0020583	486.3106117021353	156.85	1.0537	156.85	156.6	157.65	0					38	20	3	0	0	0	0.028476	1	18441	18441		11.511	0	1	125660			45323	33384	37519	37542	48786	48786					0.11711977528227635
QGWGVRPQ	8	Unmodified	_QGWGVRPQ_					0	0	0		ENSG00000188747|ENST00000683555|NOXA1;nc|ENSG00000188747|Q86UR1-2|NOXA1	ENSG00000188747|ENST00000683555|NOXA1	ENSG00000188747|ENST00000683555|NOXA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.280029296875	2	464.243401	926.472249	1.3897	0.00064515	-0.29421	-0.00013659	1.0955	0.00050856	464.2438004569691	81.701	0.36122	81.701	81.493	81.854	0					9	8	2	0	0	0	0.028476	1	8441	8441		33.516	3.0119	1	168340			45324	8497	37520	37543	48787	48787					0.0060716716033084595
QGWGVRPQ	8	Unmodified	_QGWGVRPQ_					0	0	0		ENSG00000188747|ENST00000683555|NOXA1;nc|ENSG00000188747|Q86UR1-2|NOXA1	ENSG00000188747|ENST00000683555|NOXA1	ENSG00000188747|ENST00000683555|NOXA1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.2797546386719	2	464.243401	926.472249	-0.13724	-6.3711E-05	4.3467	0.0020179	4.2094	0.0019542	464.2456762424871	83.709	0.24127	81.046	80.974	81.215	-2.6629					5	4	2	0	0	0	0.028476	1	6985	6985		40.573	16.37	1	18954			45325	8497	37520	37543	48788	48788					0.0060716716033084595
QGWRGVPK	8	Unmodified	_QGWRGVPK_					0	0	0		ENST00000526028.1_1_11:125757866-125758112:+|nuORF	ENST00000526028.1_1_11:125757866-125758112:+|nuORF	ENST00000526028.1_1_11:125757866-125758112:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.28033447265625	2	464.261594	926.508634	-0.2548	-0.00011829	-2.1621	-0.0010038	-2.4169	-0.0011221	464.2606000121078	83.614	0.24448	80.951	80.73	80.974	-2.6629					8	4	3	0	0	0	0.028476	1	6961	6961		40.573	7.057	1	32796			45326	13207	37521	37544	48789	48789					0.04244044057031715
QGWRTRKG	8	Unmodified	_QGWRTRKG_					0	0	0		ENST00000429422.5_2_3:47893042-47893423:-|nuORF	ENST00000429422.5_2_3:47893042-47893423:-|nuORF	ENST00000429422.5_2_3:47893042-47893423:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.75726318359375	2	494.7754	987.536246	1.3302	0.00065816	-3.2182	-0.0015923	-1.888	-0.00093412	494.77396775736315	67.494	0.59457	64.004	63.689	64.284	-3.4902					27	11	3	0	0	0	0.028476	1	4943	4943		15.642	5.9362	1	70037			45327	11780	37522	37545	48790	48790					0.04197947317265971
QHALTLSLL	9	Unmodified	_QHALTLSLL_					0	0	0			REV__ENST00000564184.1_1_15:72455114-72459029:-|nuORF	REV__ENST00000564184.1_1_15:72455114-72459029:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	498.29913330078125	2	498.297842	994.581131	1.9579	0.00097561	-0.099268	-4.9465E-05	1.8586	0.00092615	498.2978202110871	100.07	1.2441	100.07	99.736	100.98	0					57	29	2	0	0	0	0.14998	1	11080	11080		84.916	13.62	1	24964000	+		45328	27665	37523	37546	48791	48791					0.0836233333996006
QHANCLTQPST	11	Unmodified	_QHANCLTQPST_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-MSMS	OvCa9_classI_Rep3	3	600.2715454101562	2	600.277312	1198.54007	-4.8728	-0.002925	-3.8704	-0.0023233	-8.7432	-0.0052483	600.2748840186918	159.86	2.843	158.53	158.01	160.85	-1.3316					169	56	5	0	0	0	0.69081	2	13918	13918;13956		32.812	6.0163	1	277240	+		45329	17073	37524	37547	48792;48793	48792					-0.051257957618418004
QHAPPHLAL	9	Unmodified	_QHAPPHLAL_					0	0	0			REV__ENST00000407689.7_1_22:30684735-30685535:-|nuORF	REV__ENST00000407689.7_1_22:30684735-30685535:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.2889404296875	2	492.274701	982.534849	1.7333	0.00085326	-0.89699	-0.00044156	0.83632	0.0004117	492.2741800368143	110.23	0.40434	110.23	110.09	110.49	0					10	8	2	0	0	0	0.027462	1	12508	12508		38.806	12.01	1	39938	+		45330	25452	37525	37548	48794	48794					0.04288313228505558
QHCSHWEWTHR	11	Unmodified	_QHCSHWEWTHR_					0	0	0			REV__ENST00000566011.5_1_15:74234368-74244175:+|nuORF	REV__ENST00000566011.5_1_15:74234368-74244175:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.5950012207031	3	502.88631	1505.6371	2.2124	0.0011126	1.4661	0.00073729	3.6785	0.0018499	502.8870305490676	102.81	0.59154	102.81	102.59	103.18	0					26	13	2	0	0	0	0.026232	1	11465	11465		15.921	0	1	435330	+		45331	18884	37526	37549	48795	48795					-0.09549388762184208
QHEDIYSVQDI	11	Unmodified	_QHEDIYSVQDI_					0	0	0		nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2	nc|ENSG00000170921|Q9HCD6|TANC2	nc|ENSG00000170921|Q9HCD6|TANC2	MULTI-MSMS	OvCa99_classI_Rep5	1	449.5454406738281	3	449.545613	1345.61501	0.1305	5.8666E-05	-2.4287	-0.0010918	-2.2982	-0.0010332	449.54438758307447	56.109	0.89836	56.109	55.804	56.702	0					54	21	5	0	0	0	0.69308	1	4627	4627		32.034	2.4834	1	2337200			45332	7153	37527	37550	48796	48796					-0.04397334749614856
QHEGKELVIA	10	Unmodified	_QHEGKELVIA_					0	0	0		nc|ENSG00000144036|Q9Y2D4-2|EXOC6B;ENSG00000144036|ENST00000272427|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MULTI-MSMS	OvCa9_classI_Rep2	2	562.3086547851562	2	562.308938	1122.60332	0.74232	0.00041741	-1.1497	-0.0006465	-0.4074	-0.00022909	562.3082366051352	111.6	2.8604	111.46	110.14	113	-0.13961					133	57	4	0	0	0	0.40664	1	10533	10533		67.494	1.0644	1	604240			45333	5124	37528	37551	48797	48797					0.04692513017721467
QHEHVIHLM	9	Oxidation (M)	_QHEHVIHLM(Oxidation (M))_		QHEHVIHLM(1)		QHEHVIHLM(48)	0	0	1		nc|ENSG00000133256|P35913-3|PDE6B;nc|ENSG00000133256|P35913-2|PDE6B;ENSG00000133256|ENST00000496514|PDE6B	nc|ENSG00000133256|P35913-3|PDE6B	nc|ENSG00000133256|P35913-3|PDE6B	MULTI-MSMS	OvCa99_classI_Rep5	1	580.2880859375	2	580.287482	1158.56041	1.2903	0.00074874	-0.7862	-0.00045622	0.50409	0.00029252	580.2867305562305	133.35	0.63725	133.35	133.04	133.67	0					33	13	3	0	0	0	0.44568	1	15498	15498		47.657	8.8512	1	261960			45334	4215	37529	37552	48798	48798		135			-0.01252580311370366
QHGVPTLAKE	10	Unmodified	_QHGVPTLAKE_					0	0	0			REV__ENSG00000085465|ENST00000369732|OVGP1	REV__ENSG00000085465|ENST00000369732|OVGP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.2990112304688	2	540.29583	1078.57711	-0.33982	-0.0001836	3.7096	0.0020043	3.3698	0.0018207	540.2979670747679	38.277	3.0652	35.351	34.907	37.972	-2.9264					190	60	5	0	0	0	0.53885	1	1489	1489		49.442	1.7842	1	3652900	+		45335	17134	37530	37553	48799	48799					0.04096243846242942
QHHHQMLQYLF	11	Unmodified	_QHHHQMLQYLF_					0	0	0			REV__ENSG00000078403|ENST00000307729|MLLT10	REV__ENSG00000078403|ENST00000307729|MLLT10	MULTI-MSMS	OvCa99_classI_Rep5	1	494.5746765136719	3	494.575072	1480.70339	-0.73287	-0.00036246	-0.80407	-0.00039767	-1.5369	-0.00076013	494.5746332660187	28.962	0.44845	28.962	28.789	29.237	0					12	8	2	0	0	0	0.70587	1	998	998		27.644	13.558	1	171590	+		45336	17024	37531	37554	48800	48800					-0.017735729201149297
QHILDRFILK	10	Unmodified	_QHILDRFILK_					0	0	0		ENSG00000107187|ENST00000371748|LHX3;nc|ENSG00000107187|Q9UBR4-2|LHX3	ENSG00000107187|ENST00000371748|LHX3	ENSG00000107187|ENST00000371748|LHX3	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8825073242188	2	641.885147	1281.75574	-5.3554	-0.0034376	1.3541	0.00086916	-4.0013	-0.0025684	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.78463	1	13293	13293		20.947	3.582	1	804890			45337	2595	37532	37555	48801	48801					0.12613333485114708
QHIVRFFGVC	10	Unmodified	_QHIVRFFGVC_					0	0	0		ENST00000530298.5_1_1:156845639-156851431:+|nuORF;nc|ENSG00000198400|P04629-4|NTRK1;nc|ENSG00000198400|P04629-3|NTRK1;nc|ENSG00000198400|P04629-2|NTRK1;ENSG00000198400|ENST00000524377|NTRK1	ENST00000530298.5_1_1:156845639-156851431:+|nuORF	ENST00000530298.5_1_1:156845639-156851431:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	603.291259765625	2	603.316043	1204.61753	2.6724	0.0016123	1.6563	0.0009993	4.3287	0.0026116	603.3190464077873	96.521	0.33232	96.521	96.378	96.71	0					12	7	2	0	0	0	0.027021	1	10582	10582		37.159	19.794	1	212220			45338	8816	37533	37556	48802	48802					0.023408869650211273
QHIYARFK	8	Unmodified	_QHIYARFK_					0	0	0			REV__nc|ENSG00000108423|Q9UJT1-5|TUBD1	REV__nc|ENSG00000108423|Q9UJT1-5|TUBD1	MULTI-MSMS	OvCa9_classI_Rep3	3	531.7970581054688	2	531.795801	1061.57705	2.4154	0.0012845	-0.735	-0.00039087	1.6804	0.00089361	531.7953522843117	58.432	0.65997	55.305	54.917	55.577	-3.1264					29	17	2	0	0	0	0.7549	1	1830	1830		24.203	5.0992	1	18675	+		45339	28787	37534	37557	48803	48803					0.048722886368977925
QHKKQRVK	8	Unmodified	_QHKKQRVK_					0	0	0		ENSG00000090372|ENST00000263280|STRN4;nc|ENSG00000090372|Q9NRL3-3|STRN4;nc|ENSG00000090372|Q9NRL3-2|STRN4;ENST00000595357.5_1_19:47225490-47234099:-|nuORF	ENSG00000090372|ENST00000263280|STRN4	ENSG00000090372|ENST00000263280|STRN4	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2922973632812	2	526.327799	1050.64105	3.3812	0.0017796	1.3645	0.00071818	4.7457	0.0024978	526.3282910946642	88.336	0.84099	88.336	87.962	88.803	0					35	19	2	0	0	0	0.028476	1	9446	9446		12.207	0	1	374370			45340	1836	37535	37558	48804	48804					0.11775068793849641
QHKLNKQV	8	Unmodified	_QHKLNKQV_					0	0	0		DNAJC4|p.Q152L|1|0.24|ENSG00000110011|chr11:64232793-64232793|A/T|missense_variant	DNAJC4|p.Q152L|1|0.24|ENSG00000110011|chr11:64232793-64232793|A/T|missense_variant	DNAJC4|p.Q152L|1|0.24|ENSG00000110011|chr11:64232793-64232793|A/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	497.7931213378906	2	497.793258	993.571963	-0.26213	-0.00013049	0.34474	0.00017161	0.082605	4.112E-05	497.79316054414045	22.688	0.21472	22.688	22.574	22.789	0					9	4	3	0	0	0	0.75661	1	251	251		19.36	0	1	23431			45341	754	37536	37559	48805	48805					0.0749198477428763
QHKQHKSQI	9	Unmodified	_QHKQHKSQI_					0	0	0			REV__nc|ENSG00000197694|Q13813-3|SPTAN1	REV__nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3146362304688	2	567.312346	1132.61014	2.0704	0.0011746	3.141	0.0017819	5.2114	0.0029565	567.3139739099872	57.536	1.95	54.41	53.788	55.738	-3.1264					89	52	3	0	0	0	0.49652	1	1716	1716		42.864	2.8061	1	66904	+		45342	29086	37537	37560	48806	48806					0.049138706889380046
QHKQQRPI	8	Unmodified	_QHKQQRPI_					0	0	0		CTNNA2|p.L28Sfs*32|1|0.07|ENSG00000066032|chr2:79651638-79651639|-/CTTCCTGTGTCCATATGATCTCATTGTTCAA|frameshift_variant;ENST00000451966.5_2_2:79860937-79971553:+|nuORF;ENST00000409971.6_1_2:79751852-79971553:+|nuORF	CTNNA2|p.L28Sfs*32|1|0.07|ENSG00000066032|chr2:79651638-79651639|-/CTTCCTGTGTCCATATGATCTCATTGTTCAA|frameshift_variant	CTNNA2|p.L28Sfs*32|1|0.07|ENSG00000066032|chr2:79651638-79651639|-/CTTCCTGTGTCCATATGATCTCATTGTTCAA|frameshift_variant	MSMS	OvCa9_classI_Rep4_	4	517.802001953125	2	517.796332	1033.57811	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.14	1	117.79	117.29	118.29	-1.3444								0	0	0	0.30129	1	11177	11177		33.516	5.6333	1				45343	694	37538	37561	48807	48807					0.06266503005804225
QHLCLFAKA	9	Unmodified	_QHLCLFAKA_					0	0	0			REV__ENST00000220592.9_2_8:141534574-141534862:-|nuORF	REV__ENST00000220592.9_2_8:141534574-141534862:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7650146484375	2	515.778762	1029.54297	-1.2051	-0.00062159	3.6786	0.0018974	2.4735	0.0012758	515.7791775569158	55.097	0.87118	51.85	51.336	52.207	-3.2474					20	16	2	0	0	0	0.027462	1	3431	3431		37.159	15.457	1	28033	+		45344	23742	37539	37562	48808	48808					0.02938124153638455
QHLVQLQRSL	10	Unmodified	_QHLVQLQRSL_					0	0	0			REV__PCNT|p.A2734Qfs*36|1|0.3|ENSG00000160299|chr21:46431663-46431664|-/CAGAA|frameshift_variant	REV__PCNT|p.A2734Qfs*36|1|0.3|ENSG00000160299|chr21:46431663-46431664|-/CAGAA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3560180664062	2	611.356754	1220.69895	-3.1571	-0.0019301	2.0725	0.001267	-1.0847	-0.00066312	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.66944	1	12941	12941		33.922	3.6039	1	666990	+		45345	20654	37540	37563	48809	48809					0.09743285928584555
QHMPAGFTQS	10	Unmodified	_QHMPAGFTQS_					0	0	0		tr|A0A553SQB5|A0A553SQB5_NIACIProtein-glutamatemethylesterase/protein-glutamineglutaminaseOS=NialliacirculansOX=1397GN=cheBPE=3SV=1	tr|A0A553SQB5|A0A553SQB5_NIACIProtein-glutamatemethylesterase/protein-glutamineglutaminaseOS=NialliacirculansOX=1397GN=cheBPE=3SV=1	tr|A0A553SQB5|A0A553SQB5_NIACIProtein-glutamatemethylesterase/protein-glutamineglutaminaseOS=NialliacirculansOX=1397GN=cheBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3189086914062	2	552.250566	1102.48658	-0.20445	-0.00011291	-2.5488	-0.0014076	-2.7532	-0.0015205	552.2490695171381	52.993	0.25919	52.993	52.828	53.087	0					8	5	2	0	0	0	0.026659	1	4187	4187		30.318	0	1	130430			45346	34142	37541	37564	48810	48810					-0.06056548473679868
QHNPMVWLRPR	11	Unmodified	_QHNPMVWLRPR_					0	0	0			REV__nc|ENSG00000165828|Q96NZ9-4|PRAP1	REV__nc|ENSG00000165828|Q96NZ9-4|PRAP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.24188232421875	3	478.590945	1432.75101	-0.36194	-0.00017322	-0.30194	-0.00014451	-0.66388	-0.00031773	478.5907621621535	54.696	0.51549	54.696	54.464	54.98	0					21	11	2	0	0	0	0.02625	1	4411	4411		13.508	0	1	1227300	+		45347	21126	37542	37565	48811	48811					0.051941260707053516
QHQGLSTQLR	10	Unmodified	_QHQGLSTQLR_					0	0	0			REV__DZIP1L|p.Q122H|1|0.5|ENSG00000158163|chr3:138103606-138103606|C/G|missense_variant	REV__DZIP1L|p.Q122H|1|0.5|ENSG00000158163|chr3:138103606-138103606|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3157348632812	2	584.315086	1166.61562	0.15167	8.8621E-05	3.1216	0.001824	3.2733	0.0019126	584.3168907797178	34.71	2.55	31.922	31.249	33.799	-2.7881					139	50	5	0	0	0	0.71173	1	1114	1114		29.17	1.0886	1	1289200	+		45348	16341	37543	37566	48812	48812					0.03897549480757334
QHQILTGLVS	10	Unmodified	_QHQILTGLVS_					0	0	0			REV__tr|A0A553SFR2|A0A553SFR2_NIACIDamage-inducibleproteinDinBOS=NialliacirculansOX=1397GN=CEQ21_09345PE=3SV=1	REV__tr|A0A553SFR2|A0A553SFR2_NIACIDamage-inducibleproteinDinBOS=NialliacirculansOX=1397GN=CEQ21_09345PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	548.295166015625	2	548.31148	1094.60841	-1.5255	-0.00083642	4.425	0.0024263	2.8995	0.0015898	548.3151593460157	34.694	0.34747	31.984	31.86	32.208	-2.7097					9	6	2	0	0	0	0.026659	1	1335	1335		37.812	0	1	6580.9	+		45349	29611	37544	37567	48813	48813					0.06488816880323611
QHQKGHHKIKL	11	Unmodified	_QHQKGHHKIKL_					0	0	0		ENST00000564224.1_1_9:34664152-34664551:-|nuORF	ENST00000564224.1_1_9:34664152-34664551:-|nuORF	ENST00000564224.1_1_9:34664152-34664551:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	452.2669982910156	3	451.933588	1352.77894	-4.6838	-0.0021168	2.7151	0.001227	-1.9687	-0.00088973	451.93466630728255	157.42	2.9259	155.87	154.82	157.75	-1.545					169	85	3	0	0	0	0.72466	1	15610	15610		20.03	1.4994	1	50469			45350	13803	37545	37568	48814	48814					0.11665772322453449
QHQKILTLAV	10	Unmodified	_QHQKILTLAV_					0	0	0			REV__nc|ENSG00000139835|Q5TC63-2|GRTP1	REV__nc|ENSG00000139835|Q5TC63-2|GRTP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.8111572265625	2	575.850773	1149.68699	-0.81204	-0.00046761	3.7659	0.0021686	2.9538	0.001701	576.3545092124839	37.977	0.35433	37.977	37.806	38.161	0					9	7	2	0	0	0	0.027147	1	2108	2108		15.642	0	1	29689	+		45351	19636	37546	37569	48815	48815					0.11813669185426079
QHQQRRRA	8	Unmodified	_QHQQRRRA_					0	0	0			REV__nc|ENSG00000104863|Q9HAP6-2|LIN7B	REV__nc|ENSG00000104863|Q9HAP6-2|LIN7B	MULTI-MSMS	OvCa9_classI_Rep2	2	540.29833984375	2	540.300104	1078.58566	-1.8908	-0.0010216	-2.0438	-0.0011043	-3.9346	-0.0021259	540.2989536670705	38.535	2.9688	35.825	35.469	38.438	-2.7097					158	59	5	0	0	0	0.73288	1	1845	1845		35.201	1.0282	1	1380400	+		45352	17686	37547	37570	48816	48816					0.04950655326092601
QHQRLSSSH	9	Unmodified	_QHQRLSSSH_					0	0	0			REV__ENSG00000131845|ENST00000282286|ZNF304	REV__ENSG00000131845|ENST00000282286|ZNF304	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.2990112304688	2	540.270678	1078.5268	-0.29302	-0.00015831	-1.4063	-0.00075976	-1.6993	-0.00091807	540.2698842278091	38.345	0.14816	35.419	35.305	35.453	-2.9264					4	2	2	0	0	0	0.027461	1	1489	1489		58.782	0	1	19872	+		45353	19038	37548	37571	48817	48817					-0.009318657588892165
QHQYLQAL	8	Unmodified	_QHQYLQAL_					0	0	0			REV__ENSG00000140836|ENST00000268489|ZFHX3	REV__ENSG00000140836|ENST00000268489|ZFHX3	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.8072814941406	2	500.764166	999.513779	-0.84195	-0.00042162	1.796	0.00089936	0.95403	0.00047775	500.76498273448067	75.236	0.59654	72.825	72.631	73.228	-2.4106					21	11	3	0	0	0	0.028476	1	3794	3794		57.811	13.434	1	37314	+		45354	19702	37549	37572	48818	48818					0.01400303128991709
QHRHCIQQIL	10	Unmodified	_QHRHCIQQIL_					0	0	0		ENST00000523845.5_1_7:44260423-44302632:-|nuORF	ENST00000523845.5_1_7:44260423-44302632:-|nuORF	ENST00000523845.5_1_7:44260423-44302632:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	638.3373413085938	2	638.340581	1274.66661	-0.12103	-7.7255E-05	-4.2416	-0.0027076	-4.3626	-0.0027848	638.3379058613988	104.42	1.7532	102.3	101.64	103.39	-2.1192					111	33	6	0	0	0	0.65434	1	9459	9459		35.618	3.984	1	458220			45355	13157	37550	37573	48819	48819					0.040261752539663576
QHRRLLRVHLS	11	Unmodified	_QHRRLLRVHLS_					0	0	0		ENST00000204005.13_1_19:41119864-41120272:+|nuORF	ENST00000204005.13_1_19:41119864-41120272:+|nuORF	ENST00000204005.13_1_19:41119864-41120272:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.283447265625	3	472.288254	1413.84293	-5.3968	-0.0025489	-3.9113	-0.0018473	-9.3081	-0.0043961	472.28668669654706	159.46	3.529	157.88	156.69	160.22	-1.5858					186	88	4	0	0	0	0.72516	1	15767	15767		13.508	2.0533	1	120390			45356	9650	37551	37574	48820	48820					0.1525655247942268
QHRVHEDIE	9	Unmodified	_QHRVHEDIE_					0	0	0		ENST00000479543.1_3_11:35283254-35308332:-|nuORF;nc|ENSG00000110436|P43004-3|SLC1A2;nc|ENSG00000110436|P43004-2|SLC1A2;ENSG00000110436|ENST00000278379|SLC1A2	ENST00000479543.1_3_11:35283254-35308332:-|nuORF	ENST00000479543.1_3_11:35283254-35308332:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	581.7904052734375	2	581.783619	1161.55268	1.4228	0.00082779	4.1298	0.0024026	5.5526	0.0032304	581.7857463533247	107.14	1.0948	107.14	106.93	108.03	0					51	25	3	0	0	0	0.29717	1	12071	12071		63.306	3.188	1	2316200			45357	2776	37552	37575	48821	48821					-0.021630163072813957
QHSHPYIY	8	Unmodified	_QHSHPYIY_					0	0	0			REV__nc|ENSG00000141338|O94911-1|ABCA8	REV__nc|ENSG00000141338|O94911-1|ABCA8	MULTI-MSMS	OvCa9_classI_Rep2	2	522.7512817382812	2	522.748516	1043.48248	3.376	0.0017648	2.8873	0.0015094	6.2633	0.0032741	522.7498693889222	26.205	1.4035	23.495	23.207	24.61	-2.7097					77	38	3	0	0	0	0.73938	1	375	375		31.955	1.4512	1	431350	+		45358	19728	37553	37576	48822	48822					-0.037522699050896335
QHTFGSKGAF	10	Unmodified	_QHTFGSKGAF_					0	0	0		ENSG00000183145|ENST00000329553|RIPPLY3	ENSG00000183145|ENST00000329553|RIPPLY3	ENSG00000183145|ENST00000329553|RIPPLY3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.2982788085938	2	540.267073	1078.51959	-0.41626	-0.00022489	3.6862	0.0019915	3.27	0.0017667	540.2691713581765	38.589	0.34632	35.662	35.502	35.849	-2.9264					9	6	2	0	0	0	0.026659	1	1501	1501		30.318	0	1	12622			45359	8055	37554	37577	48823	48823					-0.01652598359351032
QHVVEGKRA	9	Unmodified	_QHVVEGKRA_					0	0	0		nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-4|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.2724609375	2	512.28834	1022.56213	-0.61306	-0.00031406	2.802	0.0014354	2.1889	0.0011213	512.2895567928903	104.64	0.42139	104.64	104.45	104.87	0					13	9	2	0	0	0	0.027462	1	11713	11713		39.253	3.6345	1	302600			45360	4667	37555	37578	48824	48824					0.05174796768903889
QHVVEGKRA	9	Unmodified	_QHVVEGKRA_					0	0	0		nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-4|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	512.28834	1022.56213	-0.33062	-0.00016937	6.3339	0.0032448	6.0032	0.0030754	512.7947427567764	105.44	0.54773	105	104.75	105.3	-0.43642	0.18289	0.0024413	NaN	39.253	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19681			45361	4667	37555	37578							0.05174796768903889
QHWTVYNV	8	Unmodified	_QHWTVYNV_					0	0	0		ENST00000426954.6_1_19:58005462-58005681:+|nuORF	ENST00000426954.6_1_19:58005462-58005681:+|nuORF	ENST00000426954.6_1_19:58005462-58005681:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2884521484375	2	523.756341	1045.49813	-1.0454	-0.00054752	-3.5436	-0.001856	-4.5889	-0.0024035	524.2560248261	39.689	0.20633	39.689	39.505	39.711	0					5	4	2	0	0	0	0.028476	1	2346	2346		42.396	0	1	55024			45362	11747	37556	37579	48825	48825					-0.02279983388052642
QIACGISHTA	10	Unmodified	_QIACGISHTA_					0	0	0		nc|ENSG00000113407|P26639-2|TARS1	nc|ENSG00000113407|P26639-2|TARS1	nc|ENSG00000113407|P26639-2|TARS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.2859191894531	2	500.747659	999.480765	2.0608	0.0010319	1.1643	0.00058302	3.2251	0.0016149	500.74902470013694	79.804	0.40607	79.804	79.625	80.031	0					11	9	2	0	0	0	0.026849	1	8188	8188		32.812	14.488	1	457650			45363	14966	37557	37580	48826	48826					-0.01899646985361869
QIAENPELQ	9	Unmodified	_QIAENPELQ_					0	0	0		ENSG00000179023|ENST00000400664|KLHDC7A	ENSG00000179023|ENST00000400664|KLHDC7A	ENSG00000179023|ENST00000400664|KLHDC7A	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.2824096679688	2	521.264196	1040.51384	0.20525	0.00010699	1.6038	0.000836	1.809	0.00094299	521.2641320484774	70.158	0.59995	67.588	67.165	67.765	-2.5707					17	11	2	0	0	0	0.027462	1	5578	5578		36.447	13.41	1	20247			45364	7794	37558	37581	48827	48827					-0.004797416616611372
QIAHQEAL	8	Unmodified	_QIAHQEAL_					0	0	0			REV__RHOBTB1|p.V580I|1|0.19|ENSG00000072422|chr10:60875031-60875031|C/T|missense_variant	REV__RHOBTB1|p.V580I|1|0.19|ENSG00000072422|chr10:60875031-60875031|C/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	455.2441101074219	2	455.243067	908.47158	0.45143	0.00020551	-0.23273	-0.00010595	0.2187	9.9563E-05	455.24291880912347	58.03	0.50529	58.03	57.775	58.28	0					28	11	3	0	0	0	0.47599	1	4904	4904		79.939	0	1	1109800	+		45365	29334	37559	37582	48828	48828					0.013683277206155253
QIAKLEEQWLS	11	Unmodified	_QIAKLEEQWLS_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OvCa9_classI_Rep2	2	449.7532653808594	3	448.910115	1343.70852	2.7699	0.0012434	1.7971	0.00080676	4.567	0.0020502	448.91091281474877	44.545	0.59613	41.835	41.603	42.199	-2.7097					14	11	2	0	0	0	0.025772	1	2580	2580		33.039	0	1	12392			45366	1212	37560	37583	48829	48829					0.05041009423484866
QIAKVVIKI	9	Unmodified	_QIAKVVIKI_					0	0	0		ZMYND8-EYA2|1|fusion;ZMYND8-EYA2|3|fusion;ZMYND8-EYA2|7|fusion;ZMYND8-EYA2|5|fusion;ZMYND8-EYA2|8|fusion;ZMYND8-EYA2|2|fusion;ZMYND8-EYA2|4|fusion;nc|ENSG00000101040|Q9ULU4-19|ZMYND8;ENSG00000101040|ENST00000471951|ZMYND8;nc|ENSG00000101040|Q9ULU4-10|ZMYND8;nc|ENSG00000101040|Q9ULU4-13|ZMYND8;nc|ENSG00000101040|Q9ULU4-20|ZMYND8;nc|ENSG00000101040|Q9ULU4-5|ZMYND8;nc|ENSG00000101040|Q9ULU4-16|ZMYND8;nc|ENSG00000101040|Q9ULU4-22|ZMYND8;nc|ENSG00000101040|Q9ULU4-12|ZMYND8;nc|ENSG00000101040|Q9ULU4-14|ZMYND8;nc|ENSG00000101040|Q9ULU4-18|ZMYND8;nc|ENSG00000101040|Q9ULU4-8|ZMYND8;nc|ENSG00000101040|Q9ULU4-15|ZMYND8;nc|ENSG00000101040|Q9ULU4-17|ZMYND8;ZMYND8-EYA2|6|fusion;nc|ENSG00000101040|Q9ULU4-9|ZMYND8;nc|ENSG00000101040|Q9ULU4|ZMYND8;nc|ENSG00000101040|Q9ULU4-21|ZMYND8;nc|ENSG00000101040|Q9ULU4-23|ZMYND8;nc|ENSG00000101040|Q9ULU4-11|ZMYND8;nc|ENSG00000101040|Q9ULU4-6|ZMYND8;nc|ENSG00000101040|Q9ULU4-3|ZMYND8;ENST00000468376.2_1_20:45867286-45947776:-|nuORF	ZMYND8-EYA2|1|fusion	ZMYND8-EYA2|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.28521728515625	2	506.349877	1010.6852	2.2937	0.0011614	0.2082	0.00010542	2.5019	0.0012668	506.3498183787087	80.057	0.9614	80.057	79.783	80.744	0					48	22	4	0	0	0	0.027462	1	8207	8207		35.618	20.954	1	2619900			45367	36318	37561	37584	48830	48830					0.18028660167453836
QIAMEPQAL	9	Unmodified	_QIAMEPQAL_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1;ENST00000577300.1_1_18:2703698-2706469:+|nuORF	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.80682373046875	2	500.760235	999.505917	-0.42869	-0.00021467	1.9806	0.00099182	1.5519	0.00077715	500.76166031071403	55.974	0.29012	55.974	55.845	56.135	0					10	6	2	0	0	0	0.027403	1	4601	4601		69.628	23.655	1	78018			45368	2189	37562	37585	48831	48831					0.0061440781720421
QIAPKVFII	9	Unmodified	_QIAPKVFII_					0	0	0			REV__ENSG00000161647|ENST00000398389|MPP3	REV__ENSG00000161647|ENST00000398389|MPP3	MULTI-MSMS	OvCa99_classI_Rep5	1	514.8256225585938	2	514.828778	1027.643	2.4418	0.0012571	-3.8211	-0.0019672	-1.3793	-0.0007101	514.826664500575	94.119	0.63424	94.119	93.841	94.475	0					33	14	3	0	0	0	0.38529	1	10243	10243		53.351	6.8947	1	1268400	+		45369	20701	37563	37586	48832	48832					0.13028684759092357
QIAQIVQLV	9	Unmodified	_QIAQIVQLV_					0	0	0		ENSG00000158486|ENST00000698260|DNAH3;nc|ENSG00000158486|Q8TD57|DNAH3;DNAH3|p.T2544Ifs*7|1|0.16|ENSG00000158486|chr16:20985111-20985112|-/A|frameshift_variant;nc|ENSG00000158486|Q8TD57-3|DNAH3;DNAH3|p.L2088Pfs*41|1|0.69|ENSG00000158486|chr16:21000370-21000382|GGAAGGTGGAGAA/-|frameshift_variant;ENST00000572640.5_1_16:21008599-21073979:-|nuORF	ENSG00000158486|ENST00000698260|DNAH3	ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	OvCa99_classI_Rep5	1	506.3161315917969	2	506.313492	1010.61243	-0.10029	-5.0778E-05	0.48243	0.00024426	0.38214	0.00019348	506.3136128181143	105.06	0.61461	105.06	104.79	105.4	0					32	13	3	0	0	0	0.48324	1	11780	11780		44.117	0	1	1467400			45370	5956	37564	37587	48833	48833					0.10754906374040729
QIAVQVRS	8	Unmodified	_QIAVQVRS_					0	0	0			REV__nc|ENSG00000139880|Q86UP0-3|CDH24	REV__nc|ENSG00000139880|Q86UP0-3|CDH24	MULTI-SECPEP	OvCa9_classI_Rep4_	4	449.7891540527344	2	450.766709	899.518865	1.6072	0.00072448	-1.1216	-0.00050558	0.48561	0.0002189	450.7659991836672	36.328	0.99688	33.479	33.288	34.285	-2.849					36	19	4	0	0	0	0.028476	1	1262	1262		30.504	8.5438	1	69992	+		45371	19640	37565	37588	48834	48834					0.06508606991621946
QICLCILFL	9	Unmodified	_QICLCILFL_					0	0	0			REV__ENST00000444443.5_1_7:12251155-12254515:+|nuORF	REV__ENST00000444443.5_1_7:12251155-12254515:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.28076171875	2	533.295399	1064.57624	1.9888	0.0010606	-0.14908	-7.9502E-05	1.8398	0.00098114	533.2953099699185	85.272	0.41541	85.272	85.046	85.462	0					14	9	2	0	0	0	0.027462	1	8966	8966		33.516	9.3128	1	343550	+		45372	25876	37566	37589	48835	48835					0.04653989881308007
QIDADTHKSL	10	Unmodified	_QIDADTHKSL_					0	0	0			REV__ENST00000454487.6_1_4:1090522-1107300:-|nuORF	REV__ENST00000454487.6_1_4:1090522-1107300:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	564.2879638671875	2	564.288202	1126.56185	-0.17762	-0.00010023	0.19384	0.00010938	0.016223	9.1546E-06	564.2882165282919	25.067	0.30372	25.067	24.938	25.242	0					13	5	3	0	0	0	0.52439	1	526	526		51.193	0	1	140170	+		45373	22052	37567	37590	48836	48836					0.0036333225837097416
QIDAPLEVE	9	Unmodified	_QIDAPLEVE_					0	0	0		nc|ENSG00000155592|Q63HK3-2|ZKSCAN2;ENST00000565590.1_1_16:25258001-25268460:-|nuORF;ENSG00000155592|ENST00000328086|ZKSCAN2	nc|ENSG00000155592|Q63HK3-2|ZKSCAN2	nc|ENSG00000155592|Q63HK3-2|ZKSCAN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.84698486328125	2	507.261122	1012.50769	-0.55465	-0.00028135	-0.095086	-4.8234E-05	-0.64974	-0.00032959	507.26106930856474	41.588	0.34611	41.588	41.462	41.809	0					10	7	2	0	0	0	0.027426	1	2594	2594		44.117	6.3053	1	55960			45374	5791	37568	37591	48837	48837					0.0019374010681758591
QIDDVQLMN	9	Oxidation (M)	_QIDDVQLM(Oxidation (M))N_		QIDDVQLM(1)N		QIDDVQLM(46)N	0	0	1			REV__tr|A0A7D6VRF8|A0A7D6VRF8_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05350PE=4SV=1	REV__tr|A0A7D6VRF8|A0A7D6VRF8_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05350PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.251953125	2	546.255514	1090.49647	-1.0578	-0.00057781	-2.4113	-0.0013172	-3.4691	-0.001895	546.2540824199572	120.78	3.5873	119.44	118.98	122.56	-1.3479					124	70	4	0	0	0	0.46356	1	11378	11378		45.972	6.7194	1	370910	+		45375	31412	37569	37592	48838	48838		696			-0.04515405258962346
QIDKVAKEI	9	Unmodified	_QIDKVAKEI_					0	0	0			REV__tr|A0A553SS03|A0A553SS03_NIACIMMPLfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_02030PE=4SV=1	REV__tr|A0A553SS03|A0A553SS03_NIACIMMPLfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_02030PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.3099365234375	2	522.308406	1042.60226	-1.3075	-0.00068294	-0.50604	-0.00026431	-1.8136	-0.00094724	522.3076708198822	53.786	1.7405	50.538	50.161	51.901	-3.2474					72	33	4	0	0	0	0.094616	1	3334	3334		98.629	5.4339	1	1360800	+		45376	30785	37570	37593	48839	48839					0.08266298648823067
QIDNQNDPEV	10	Unmodified	_QIDNQNDPEV_					0	0	0		ENSG00000158301|ENST00000483720|GPRASP2	ENSG00000158301|ENST00000483720|GPRASP2	ENSG00000158301|ENST00000483720|GPRASP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.344482421875	2	586.264924	1170.5153	0.67651	0.00039661	-3.4082	-0.0019981	-2.7317	-0.0016015	586.2627241608376	114.96	0.42295	114.96	114.74	115.16	0					15	8	3	0	0	0	0.02706	1	13108	13108		30.318	8.632	1	86551			45377	5945	37571	37594	48840	48840					-0.06314152363574976
QIDSYKSVE	9	Unmodified	_QIDSYKSVE_					0	0	0			REV__ENST00000509490.5_1_4:55145100-55147845:+|nuORF	REV__ENST00000509490.5_1_4:55145100-55147845:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.8120727539062	2	534.764029	1067.5135	-1.5843	-0.00084722	-3.9428	-0.0021085	-5.5271	-0.0029557	534.7613952667989	93.533	0.34164	91.026	90.763	91.105	-2.5072					10	6	2	0	0	0	0.027462	1	8127	8127		22.58	0	1	28756	+		45378	19238	37572	37595	48841	48841					-0.017551613814930533
QIDSYKSVE	9	Unmodified	_QIDSYKSVE_					0	0	0			REV__ENST00000509490.5_1_4:55145100-55147845:+|nuORF	REV__ENST00000509490.5_1_4:55145100-55147845:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	534.764029	1067.5135	-0.6353	-0.00033974	-5.4727	-0.0029266	-6.108	-0.0032663	534.760735167458	92.911	0.63747	90.95	90.79	91.427	-1.9617	-0.037928	-0.0005765	NaN	29.17	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24142	+		45379	19238	37572	37595							-0.017551613814930533
QIEARERVI	9	Unmodified	_QIEARERVI_					0	0	0		chr3:40458736-40461489|146|208.64|0.09|11.18|+|0|RPL14,None|2	chr3:40458736-40461489|146|208.64|0.09|11.18|+|0|RPL14,None|2	chr3:40458736-40461489|146|208.64|0.09|11.18|+|0|RPL14,None|2	MULTI-MSMS	OvCa99_classI_Rep5	1	557.3292236328125	2	557.32238	1112.63021	2.127	0.0011854	0.83112	0.0004632	2.9581	0.0016486	557.3225985729965	77.946	0.57344	77.946	77.801	78.374	0					19	13	2	0	0	0	0.42576	1	7896	7896		49.536	0.094497	1	697710			45380	484	37573	37596	48842	48842					0.07839621628886562
QIEEHLKD	8	Unmodified	_QIEEHLKD_					0	0	0			REV__ENST00000399580.2_1_X:83004518-83004785:-|nuORF	REV__ENST00000399580.2_1_X:83004518-83004785:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.2752990722656	2	506.258914	1010.50327	-1.4021	-0.00070984	-1.8073	-0.00091496	-3.2094	-0.0016248	506.7593351341553	84.266	1.4257	82.719	82.122	83.548	-1.5462					31	27	2	0	0	0	0.028476	1	7319	7319		53.351	0	1	12531	+		45381	20074	37574	37597	48843	48843					-0.0015572431609598425
QIEELKKQN	9	Unmodified	_QIEELKKQN_					0	0	0		ENST00000548943.1_1_12:106565027-106566212:+|nuORF	ENST00000548943.1_1_12:106565027-106566212:+|nuORF	ENST00000548943.1_1_12:106565027-106566212:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	565.3148193359375	2	565.31422	1128.61389	-0.33863	-0.00019143	-0.4419	-0.00024981	-0.78053	-0.00044124	565.3146090333048	59.402	2.1276	56.622	55.838	57.966	-2.7801					203	40	7	0	0	0	0.036986	1	4329	4329		129.42	19.943	1	1937000			45382	13566	37575	37598	48844	48844					0.05472495672142941
QIEETEPK	8	Unmodified	_QIEETEPK_					0	0	0			REV__nc|ENSG00000165837|Q5W0A0-2|ERICH6B	REV__nc|ENSG00000165837|Q5W0A0-2|ERICH6B	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.2570495605469	2	487.245472	972.476391	-2.109	-0.0010276	-0.62683	-0.00030542	-2.7358	-0.001333	487.2448033638797	103.84	0.38119	103.84	103.64	104.02	0					14	8	2	0	0	0	0.028476	1	11627	11627		30.504	12.179	1	198010	+		45383	21128	37576	37599	48845	48845					-0.010948329272878254
QIEFWNGENGS	11	Unmodified	_QIEFWNGENGS_					0	0	0			REV__ENSG00000134757|ENST00000257189|DSG3	REV__ENSG00000134757|ENST00000257189|DSG3	MULTI-MSMS	OvCa99_classI_Rep5	1	640.78271484375	2	640.780741	1279.54693	0.052396	3.3575E-05	0.092702	5.9402E-05	0.1451	9.2976E-05	640.7808469072285	60.328	1.5038	60.328	59.997	61.501	0					85	35	5	0	0	0	0.19643	1	5266	5266		80.455	0.74203	1	9372600	+		45384	19227	37577	37600	48846	48846					-0.08166159609618262
QIEKTLQRWKR	11	Unmodified	_QIEKTLQRWKR_					0	0	0			REV__nc|ENSG00000165097|Q8NB78-2|KDM1B	REV__nc|ENSG00000165097|Q8NB78-2|KDM1B	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.9584655761719	3	495.959803	1484.85758	-6.4865	-0.003217	4.315	0.0021401	-2.1715	-0.001077	495.96187478588956	163.63	1.693	161.99	160.63	162.32	-1.6336					149	48	4	0	0	0	0.72488	1	16134	16134		17.167	2.4731	1	106460	+		45385	21056	37578	37601	48847	48847					0.1345457983684355
QIELDLKAT	9	Unmodified	_QIELDLKAT_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ZNF586-EIF4A1|4|fusion;ZNF586-EIF4A1|1|fusion;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ZNF586-EIF4A1|3|fusion;nc|ENSG00000161960|P60842-2|EIF4A1;ZNF586-EIF4A1|2|fusion;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000580461.5_1_17:7476163-7478717:+|nuORF;ENST00000584901.5_1_17:7476159-7480015:+|nuORF;ENST00000550578.1_1_12:53547103-53547616:+|nuORF;ENST00000582848.5_1_17:7476159-7480015:+|nuORF;ENST00000584712.5_1_17:7476159-7478717:+|nuORF;ENST00000578754.5_2_17:7476163-7480421:+|nuORF;ENST00000428062.1_1_13:37513331-37513424:-|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.3458251953125	2	515.792589	1029.57063	-0.46514	-0.00023992	-0.71602	-0.00036932	-1.1812	-0.00060923	515.7919385054488	68.595	0.82536	68.595	68.152	68.977	0					34	19	3	0	0	0	0.027462	1	6424	6424		44.377	1.5129	1	1314000			45386	6146	37579	37602	48848	48848					0.05702305894828896
QIELQNKGE	9	Unmodified	_QIELQNKGE_					0	0	0			REV__PDPR|p.H811Mfs*23|1|0.02|ENSG00000090857|chr16:70156669-70156670|-/ATGGATTT|frameshift_variant	REV__PDPR|p.H811Mfs*23|1|0.02|ENSG00000090857|chr16:70156669-70156670|-/ATGGATTT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	529.7766723632812	2	529.77747	1057.54039	0.77441	0.00041026	-1.5884	-0.0008415	-0.814	-0.00043124	529.7765750609487	128.34	1.2351	127.25	126.97	128.21	-1.0933					47	24	3	0	0	0	0.51865	1	10094	10094		40.778	5.1599	1	96759	+		45387	17234	37580	37603	48849	48849					0.013919472296720414
QIEPVNELL	9	Unmodified	_QIEPVNELL_					0	0	0			REV__PPP2R2A-DHTKD1|2|fusion	REV__PPP2R2A-DHTKD1|2|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.78466796875	2	527.792589	1053.57063	-0.14779	-7.8001E-05	1.3764	0.00072646	1.2286	0.00064846	527.7932221130329	56.854	0.52043	56.854	56.788	57.309	0					17	11	2	0	0	0	0.027462	1	4752	4752		23.042	8.1776	1	345450	+		45388	29315	37581	37604	48850	48850					0.04598305894865007
QIEYERNNE	9	Unmodified	_QIEYERNNE_					0	0	0		ENSG00000164430|ENST00000370315|CGAS	ENSG00000164430|ENST00000370315|CGAS	ENSG00000164430|ENST00000370315|CGAS	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.8253784179688	2	597.772916	1193.53128	-0.38441	-0.00022979	2.6299	0.0015721	2.2455	0.0013423	597.7744071783246	38.124	0.41161	38.124	37.983	38.394	0					15	8	2	0	0	0	0.027462	1	2172	2172		45.972	19.279	1	61205			45389	6456	37582	37605	48851	48851					-0.057744461266338476
QIFFEQTI	8	Unmodified	_QIFFEQTI_					0	0	0			REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|168|3|sense	REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|168|3|sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.30859375	2	513.26875	1024.52295	-0.62261	-0.00031956	-3.8863	-0.0019947	-4.5089	-0.0023143	513.266941707677	76.98	0.68082	74.608	74.348	75.028	-2.3715					16	12	2	0	0	0	0.028476	1	4028	4028		31.955	0	1	25044	+		45390	28493	37583	37606	48852	48852					0.011666516946661432
QIFFEQTI	8	Unmodified	_QIFFEQTI_					0	0	0			REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|168|3|sense	REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|168|3|sense	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	513.26875	1024.52295	-0.45838	-0.00023527	-11.161	-0.0057288	-11.62	-0.0059641	513.7654971640101	77.455	0.24081	74.639	74.44	74.681	-2.8165	0.015091	-0.0050885	NaN	37.159	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13051	+		45391	28493	37583	37606							0.011666516946661432
QIFFGNSLE	9	Unmodified	_QIFFGNSLE_					0	0	0			REV__ENSG00000135617|ENST00000258083|PRADC1	REV__ENSG00000135617|ENST00000258083|PRADC1	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.315673828125	2	527.763832	1053.51311	-1.5558	-0.0008211	-2.0034	-0.0010573	-3.5592	-0.0018784	527.7615230569036	101.5	0.4448	100.74	100.47	100.91	-0.76401					11	8	2	0	0	0	0.027462	1	9325	9325		27.882	2.4321	1	14287	+		45392	19304	37584	37607	48853	48853					-0.011505363107289668
QIFIYKQR	8	Unmodified	_QIFIYKQR_					0	0	0		ENST00000332303.5_2_15:29560681-29560825:-|nuORF	ENST00000332303.5_2_15:29560681-29560825:-|nuORF	ENST00000332303.5_2_15:29560681-29560825:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.291748046875	2	548.319109	1094.62366	-0.99397	-0.00054501	-2.9158	-0.0015988	-3.9098	-0.0021438	548.3173762743509	70.145	0.63956	66.663	66.442	67.081	-3.4812					23	12	2	0	0	0	0.028476	1	5264	5264		12.207	0	1	121700			45393	10455	37585	37608	48854	48854					0.08013728468154113
QIFLEMGFT	9	Unmodified	_QIFLEMGFT_					0	0	0		nc|ENSG00000179115|Q9Y285-2|FARSA;ENSG00000179115|ENST00000314606|FARSA	nc|ENSG00000179115|Q9Y285-2|FARSA	nc|ENSG00000179115|Q9Y285-2|FARSA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.3563232421875	2	543.270435	1084.52632	-0.88864	-0.00048277	-3.9768	-0.0021605	-4.8654	-0.0026432	543.2679580007263	46.78	0.4615	43.708	43.552	44.014	-3.0724					12	8	2	0	0	0	0.027462	1	2476	2476		23.042	12.177	1	18583			45394	7803	37586	37609	48855	48855					-0.012564215229986075
QIFLEPSI	8	Unmodified	_QIFLEPSI_					0	0	0			REV__DHX32|p.M690I|1|0.14|ENSG00000089876|chr10:125836849-125836849|C/G|missense_variant	REV__DHX32|p.M690I|1|0.14|ENSG00000089876|chr10:125836849-125836849|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	473.7637634277344	2	473.765843	945.517133	-1.0019	-0.00047467	-3.0066	-0.0014244	-4.0085	-0.0018991	473.76420481177126	55.953	0.94035	53.149	52.731	53.671	-2.804					52	18	4	0	0	0	0.59148	1	3925	3925		65.803	2.4969	1	232520	+		45395	16295	37587	37610	48856	48856					0.042195531829861466
QIFLIEVE	8	Unmodified	_QIFLIEVE_					0	0	0			REV__nc|ENSG00000139163|Q9HBU6|ETNK1	REV__nc|ENSG00000139163|Q9HBU6|ETNK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.7934875488281	2	495.778951	989.543348	-0.47913	-0.00023754	-3.4458	-0.0017084	-3.9249	-0.0019459	495.77706678944617	52.659	0.65455	49.451	49.044	49.698	-3.208					16	12	2	0	0	0	0.028476	1	3130	3130		30.504	6.3009	1	27368	+		45396	19592	37588	37611	48857	48857					0.0481582235447604
QIFPSLELE	9	Unmodified	_QIFPSLELE_					0	0	0		CON__Q28107	CON__Q28107	CON__Q28107	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.3167114257812	2	538.28714	1074.55973	-0.67321	-0.00036238	-1.7149	-0.00092308	-2.3881	-0.0012855	538.2859998324318	59.285	0.91416	59.285	59.083	59.997	0					40	23	3	0	0	0	0.027433	1	5089	5089		74.255	13.283	1	2237300		+	45397	638	37589	37612	48858	48858					0.025429035205434047
QIFPSLELE	9	Unmodified	_QIFPSLELE_					0	0	0		CON__Q28107	CON__Q28107	CON__Q28107	MULTI-MATCH	OvCa9_classI_Rep2	2		2	538.28714	1074.55973	-2.2251	-0.0011977	-2.1708	-0.0011685	-4.3959	-0.0023663	538.2864597500995	61.849	0.45663	59.09	58.829	59.286	-2.7593	-0.097302	-0.0004573	NaN	84.916	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7534.2		+	45398	638	37589	37612							0.025429035205434047
QIFRLGRK	8	Unmodified	_QIFRLGRK_					0	0	0			REV__ENSG00000139433|ENST00000318348|GLTP	REV__ENSG00000139433|ENST00000318348|GLTP	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.22662353515625	2	509.319443	1016.62433	-2.6496	-0.0013495	0.49584	0.00025254	-2.1538	-0.0010969	509.3198073781436	36.097	0.39612	33.387	33.201	33.597	-2.7097					10	7	2	0	0	0	0.028476	1	1506	1506		25.45	0	1	14833	+		45399	19610	37590	37613	48859	48859					0.11668567907895522
QIFRLGRK	8	Unmodified	_QIFRLGRK_					0	0	0			REV__ENSG00000139433|ENST00000318348|GLTP	REV__ENSG00000139433|ENST00000318348|GLTP	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	509.319443	1016.62433	0.69106	0.00035197	-2.149	-0.0010945	-1.458	-0.00074256	509.31820868024386	35.963	0.69998	33.114	32.889	33.589	-2.849	-0.13626	-0.00053056	NaN	25.45	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58874	+		45400	19610	37590	37613							0.11668567907895522
QIFVKTLTGK	10	Unmodified	_QIFVKTLTGK_					0	0	0		ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000221983|ENST00000442744|UBA52;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000463185.1_1_2:55459960-55460026:+|nuORF;ENST00000598814.1_1_19:18682694-18684218:+|nuORF;UBC|p.T12Pfs*32|1|0.65|ENSG00000150991|chr12:124913738-124913738|T/-|frameshift_variant;ENST00000471772.6_1_2:55459960-55460558:+|nuORF;UBC|p.T12Hfs*7|1|0.04|ENSG00000150991|chr12:124913738-124913739|-/G|frameshift_variant	ENSG00000150991|ENST00000339647|UBC	ENSG00000150991|ENST00000339647|UBC	MULTI-MSMS	OvCa9_classI_Rep2	2	567.84765625	2	567.847699	1133.68084	0.15618	8.8688E-05	-0.86721	-0.00049244	-0.71103	-0.00040376	567.8471781480433	71.601	4.6386	69.094	68.752	73.39	-2.5072					204	88	4	0	0	0	4.4402E-06	12	5788	5755;5757;5763;5769;5775;5782;5788;5794;5801;5807;5813;5820		195.05	67.584	1	3632300			45401	5110	37591	37614	48860;48861;48862;48863;48864;48865;48866;48867;48868;48869;48870;48871	48866					0.1193515095390012
QIFVKTLTGK	10	Unmodified	_QIFVKTLTGK_					0	0	0		ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000221983|ENST00000442744|UBA52;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000463185.1_1_2:55459960-55460026:+|nuORF;ENST00000598814.1_1_19:18682694-18684218:+|nuORF;UBC|p.T12Pfs*32|1|0.65|ENSG00000150991|chr12:124913738-124913738|T/-|frameshift_variant;ENST00000471772.6_1_2:55459960-55460558:+|nuORF;UBC|p.T12Hfs*7|1|0.04|ENSG00000150991|chr12:124913738-124913739|-/G|frameshift_variant	ENSG00000150991|ENST00000339647|UBC	ENSG00000150991|ENST00000339647|UBC	MULTI-MSMS	OvCa9_classI_Rep3	3	567.8473510742188	2	567.847699	1133.68084	0.10267	5.8302E-05	-0.93239	-0.00052945	-0.82972	-0.00047115	567.8471745055194	71.708	4.3042	69.106	68.782	73.086	-2.6023					217	86	4	0	0	0	0.0017528	15	3365	3349;3353;3359;3365;3371;3377;3383;3390;3396;3402;3408;3414;3422;3427;3435		172.25	56.755	1	5227000			45402	5110	37591	37614	48872;48873;48874;48875;48876;48877;48878;48879;48880;48881;48882;48883;48884;48885;48886	48875					0.1193515095390012
QIFVKTLTGK	10	Unmodified	_QIFVKTLTGK_					0	0	0		ENSG00000150991|ENST00000339647|UBC;ENST00000578649.1_1_17:16284470-16285908:+|nuORF;ENSG00000170315|ENST00000302182|UBB;ENSG00000143947|ENST00000272317|RPS27A;ENSG00000221983|ENST00000442744|UBA52;ENST00000478196.6_1_2:55459960-55462152:+|nuORF;ENST00000584755.1_1_17:21730896-21731370:+|nuORF;ENST00000495843.1_1_2:55459960-55461412:+|nuORF;ENST00000463185.1_1_2:55459960-55460026:+|nuORF;ENST00000598814.1_1_19:18682694-18684218:+|nuORF;UBC|p.T12Pfs*32|1|0.65|ENSG00000150991|chr12:124913738-124913738|T/-|frameshift_variant;ENST00000471772.6_1_2:55459960-55460558:+|nuORF;UBC|p.T12Hfs*7|1|0.04|ENSG00000150991|chr12:124913738-124913739|-/G|frameshift_variant	ENSG00000150991|ENST00000339647|UBC	ENSG00000150991|ENST00000339647|UBC	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.8482666015625	2	567.847699	1133.68084	-0.68401	-0.00038841	-0.26676	-0.00015148	-0.95076	-0.00053989	567.8474944489803	72.816	3.3234	69.42	69.107	72.431	-3.3961					170	68	4	0	0	0	2.8494E-05	6	5611	5599;5611;5623;5636;5649;5661		185.72	58.257	1	4625000			45403	5110	37591	37614	48887;48888;48889;48890;48891;48892	48888					0.1193515095390012
QIFYNDIMKT	10	Unmodified	_QIFYNDIMKT_					0	0	0			REV__tr|A0A7D6ZGV9|A0A7D6ZGV9_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00330PE=4SV=1	REV__tr|A0A7D6ZGV9|A0A7D6ZGV9_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00330PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	423.94305419921875	3	424.88128	1271.62201	-0.53652	-0.00022796	-1.2595	-0.00053514	-1.796	-0.00076309	425.21356373585553	42.159	0.13165	42.159	42.068	42.199	0					4	2	2	0	0	0	0.027165	1	2683	2683		10.104	0	1	13008	+		45404	32009	37592	37615	48893	48893					-0.0029369340279572498
QIFYNDIMKT	10	Unmodified	_QIFYNDIMKT_					0	0	0			REV__tr|A0A7D6ZGV9|A0A7D6ZGV9_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00330PE=4SV=1	REV__tr|A0A7D6ZGV9|A0A7D6ZGV9_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00330PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	425.562744140625	3	424.88128	1271.62201	-0.57838	-0.00024574	1.9579	0.00083188	1.3795	0.00058614	425.21611651002235	69.374	0.25008	66.753	66.565	66.815	-2.6203					7	4	2	0	0	0	0.027089	1	5494	5494		25.126	5.8633	1	9057.4	+		45405	32009	37592	37615	48894	48894					-0.0029369340279572498
QIGEKKMTL	9	Unmodified	_QIGEKKMTL_					0	0	0			REV__nc|ENSG00000107485|P23771|GATA3	REV__nc|ENSG00000107485|P23771|GATA3	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.7763061523438	2	524.296985	1046.57942	1.6092	0.00084369	1.3365	0.00070072	2.9457	0.0015444	524.2975166278646	29.06	0.33583	26.35	26.216	26.552	-2.7097					9	6	2	0	0	0	0.027462	1	682	682		19.997	0	1	14016	+		45406	17846	37593	37616	48895	48895					0.05798956259695842
QIGGDAIIPV	10	Unmodified	_QIGGDAIIPV_					0	0	0			REV__ENST00000469328.5_1_7:128033063-128040541:-|nuORF	REV__ENST00000469328.5_1_7:128033063-128040541:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.3105773925781	2	491.782025	981.549496	-0.46854	-0.00023042	0.12931	6.3591E-05	-0.33923	-0.00016683	491.78162452651657	102.12	1.1376	101.38	101.09	102.23	-0.73845					26	22	2	0	0	0	0.026752	1	9418	9418		35.618	0.41757	1	25657	+		45407	17798	37594	37617	48896	48896					0.05798340585988626
QIGGRLQNV	9	Unmodified	_QIGGRLQNV_					0	0	0		ENST00000475195.5_1_2:242577129-242594181:+|nuORF	ENST00000475195.5_1_2:242577129-242594181:+|nuORF	ENST00000475195.5_1_2:242577129-242594181:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.782470703125	2	492.78289	983.551228	-0.52642	-0.00025941	-3.186	-0.00157	-3.7124	-0.0018294	492.78121293855645	127.63	0.9735	126.19	125.84	126.81	-1.4357					30	18	2	0	0	0	0.55588	1	12182	12182		37.159	1.9584	1	78363			45408	12444	37595	37618	48897	48897					0.05879394394617066
QIGGRLQNV	9	Unmodified	_QIGGRLQNV_					0	0	0		ENST00000475195.5_1_2:242577129-242594181:+|nuORF	ENST00000475195.5_1_2:242577129-242594181:+|nuORF	ENST00000475195.5_1_2:242577129-242594181:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	492.78289	983.551228	1.3352	0.00065798	-5.0334	-0.0024804	-3.6982	-0.0018224	492.7802300408434	126.5	0.78854	126.27	126.1	126.89	-0.2359	0.027384	-0.0010194	NaN	37.159	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57856			45409	12444	37595	37618							0.05879394394617066
QIGGRLQNV	9	Unmodified	_QIGGRLQNV_					0	0	0		ENST00000475195.5_1_2:242577129-242594181:+|nuORF	ENST00000475195.5_1_2:242577129-242594181:+|nuORF	ENST00000475195.5_1_2:242577129-242594181:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	492.78289	983.551228	0.86871	0.00042808	-3.9699	-0.0019563	-3.1012	-0.0015282	492.7806341001373	127.33	0.88103	126.26	125.97	126.85	-1.0715	0.018438	2.8805E-05	NaN	37.159	36	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58114			45410	12444	37595	37618							0.05879394394617066
QIGKEEVRL	9	Unmodified	_QIGKEEVRL_					0	0	0		L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|187|3|sense	L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|187|3|sense	L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|187|3|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	536.3092651367188	2	536.31148	1070.60841	-0.30176	-0.00016184	-0.58882	-0.00031579	-0.89058	-0.00047763	536.3112031522287	50.929	1.1959	50.929	50.551	51.747	0					99	27	5	0	0	0	0.036986	1	3876	3876		129.42	19.943	1	53703000			45411	14560	37596	37619	48898	48898					0.07592816880332975
QIGKPVSL	8	Unmodified	_QIGKPVSL_					0	0	0			REV__nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	REV__nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	MULTI-MSMS	OvCa9_classI_Rep2	2	421.25946044921875	2	421.260728	840.506903	0.30073	0.00012669	-3.3692	-0.0014193	-3.0685	-0.0012926	421.25922240366054	134.3	0.7355	134.07	133.56	134.29	-0.22696					27	14	2	0	0	0	0.75723	1	13284	13284		23.042	0	1	153990	+		45412	20638	37597	37620	48899	48899					0.08026990248424681
QIGLSALYPL	10	Unmodified	_QIGLSALYPL_					0	0	0			REV__ENST00000538334.1_1_12:121766117-121768505:-|nuORF	REV__ENST00000538334.1_1_12:121766117-121768505:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	537.2659912109375	2	537.813325	1073.6121	1.4376	0.00077315	-2.6771	-0.0014398	-1.2395	-0.00066664	537.8116107626423	107.12	0.93334	105.85	105.37	106.31	-1.267					24	18	2	0	0	0	0.026635	1	7531	7531		47.657	9.8458	1	33703	+		45413	17196	37598	37621	48900	48900					0.0782348665416066
QIGLSALYPL	10	Unmodified	_QIGLSALYPL_					0	0	0			REV__ENST00000538334.1_1_12:121766117-121768505:-|nuORF	REV__ENST00000538334.1_1_12:121766117-121768505:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	537.813325	1073.6121	-0.98544	-0.00052999	0.47511	0.00025552	-0.51034	-0.00027447	537.8135390207964	106.05	0.94814	105.62	105.25	106.2	-0.43642	-0.11551	0.0013337	NaN	47.657	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22993	+		45414	17196	37598	37621							0.0782348665416066
QIGRLYALFIV	11	Unmodified	_QIGRLYALFIV_					0	0	0			REV__NTF3|p.W239*|1|0.08|ENSG00000185652|chr12:5494930-5494930|G/-|frameshift_variant	REV__NTF3|p.W239*|1|0.08|ENSG00000185652|chr12:5494930-5494930|G/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	432.2055358886719	3	431.595691	1291.76524	0.32871	0.00014187	-2.9493	-0.0012729	-2.6205	-0.001131	431.5944800948092	31.633	0.14853	31.633	31.559	31.708	0					4	2	2	0	0	0	0.026221	1	1309	1309		14.086	1.2743	1	8044.2	+		45415	22517	37599	37622	48901	48901					0.13103101770639114
QIGYKWSI	8	Unmodified	_QIGYKWSI_					0	0	0		tr|A0A7D6ZYS0|A0A7D6ZYS0_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17455PE=4SV=1	tr|A0A7D6ZYS0|A0A7D6ZYS0_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17455PE=4SV=1	tr|A0A7D6ZYS0|A0A7D6ZYS0_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17455PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.77215576171875	2	497.77146	993.528367	-1.1361	-0.00056551	1.5053	0.00074932	0.36927	0.00018381	497.77230111466895	100.94	0.94262	100.17	99.724	100.67	-0.76401					22	18	2	0	0	0	0.028476	1	9252	9252		24.203	0	1	14739			45416	35927	37600	37623	48902	48902					0.031343752771249456
QIGYQNTIL	9	Unmodified	_QIGYQNTIL_					0	0	0			REV__ENST00000263245.9_1_22:43192847-43192919:-|nuORF	REV__ENST00000263245.9_1_22:43192847-43192919:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	526.2855224609375	2	525.284931	1048.55531	0.26976	0.0001417	-0.89426	-0.00046974	-0.6245	-0.00032804	525.2844511785617	113.7	2.1235	113.58	113.02	115.14	-0.11777					119	42	4	0	0	0	0.48324	1	10776	10776		44.117	0	1	925990	+		45417	23995	37601	37624	48903	48903					0.03297439097673305
QIHALLETE	9	Unmodified	_QIHALLETE_					0	0	0		nc|ENSG00000151320|Q13023-2|AKAP6;AKAP6|p.S1378Cfs*4|1|0.03|ENSG00000151320|chr14:32821945-32821946|-/GTTATCC|frameshift_variant;AKAP6|p.C1453Wfs*29|1|0.37|ENSG00000151320|chr14:32822170-32822173|TGTT/-|frameshift_variant;ENSG00000151320|ENST00000280979|AKAP6;AKAP6|p.M2317Hfs*14|1|0.04|ENSG00000151320|chr14:32824761-32824762|-/CATGGGAAAGAGATTTCAGAGAGTGAGCATTGTA|frameshift_variant;AKAP6|p.H353Lfs*45|1|0.35|ENSG00000151320|chr14:32545709-32545733|CCATCATGATGCAAAGAATCAGCAG/-|frameshift_variant;AKAP6|p.R371Qfs*35|1|0.11|ENSG00000151320|chr14:32545765-32545765|G/-|frameshift_variant	nc|ENSG00000151320|Q13023-2|AKAP6	nc|ENSG00000151320|Q13023-2|AKAP6	MULTI-MSMS	OvCa9_classI_Rep2	2	527.2823486328125	2	527.282389	1052.55022	-1.0628	-0.00056039	0.78414	0.00041347	-0.27864	-0.00014692	527.2826541808121	56.719	1.6865	53.915	53.374	55.06	-2.804					115	33	5	0	0	0	0.48324	1	4035	4035		44.117	1.7207	1	682000			45418	57	37602	37625	48904	48904					0.026051352350577872
QIHGVIIGIA	10	Unmodified	_QIHGVIIGIA_					0	0	0			REV__nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD	REV__nc|ENSG00000213672|Q9NZQ3-5|NCKIPSD	MULTI-MSMS	OvCa9_classI_Rep2	2	510.81268310546875	2	510.813659	1019.61277	-0.86086	-0.00043974	0.63432	0.00032402	-0.22653	-0.00011572	510.8139315738642	121.22	1.0883	121.02	120.8	121.89	-0.19719					39	21	3	0	0	0	0.64063	1	11712	11712		37.159	0.13063	1	74700	+		45419	23265	37603	37626	48905	48905					0.10374326093904074
QIHKRTLW	8	Unmodified	_QIHKRTLW_					0	0	0			REV__ENSG00000278259|ENST00000614623|MYO19	REV__ENSG00000278259|ENST00000614623|MYO19	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.7854614257812	2	541.3169	1080.61925	-1.1856	-0.00064179	-2.1043	-0.0011391	-3.2899	-0.0017809	541.3155053760728	91.688	0.55267	89.145	88.811	89.364	-2.5425					20	10	3	0	0	0	0.028476	1	7898	7898		37.159	15.199	1	45508	+		45420	23640	37604	37627	48906	48906					0.08216264045267963
QIHLIKERFV	10	Unmodified	_QIHLIKERFV_					0	0	0			REV__ENSG00000107201|ENST00000379883|RIGI	REV__ENSG00000107201|ENST00000379883|RIGI	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8818359375	2	641.885147	1281.75574	-4.605	-0.0029559	0.1276	8.1903E-05	-4.4774	-0.002874	641.8852528126143	150.24	3.761	149.29	147.05	150.81	-0.95119					231	74	4	0	0	0	0.7759	1	12831	12831		21.96	1.013	1	246170	+		45421	17837	37605	37628	48907	48907					0.1261333348509197
QIHLIKERFV	10	Unmodified	_QIHLIKERFV_					0	0	0			REV__ENSG00000107201|ENST00000379883|RIGI	REV__ENSG00000107201|ENST00000379883|RIGI	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8824462890625	2	641.885147	1281.75574	-5.3554	-0.0034376	1.3541	0.00086916	-4.0013	-0.0025684	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.73378	1	13285	13285		26.693	4.1133	1	804890	+		45422	17837	37605	37628	48908	48908					0.1261333348509197
QIHLKKLL	8	Unmodified	_QIHLKKLL_					0	0	0			REV__ENSG00000184445|ENST00000333479|KNTC1	REV__ENSG00000184445|ENST00000333479|KNTC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.2674560546875	2	496.834394	991.654236	2.0314	0.0010092	0.12626	6.2732E-05	2.1576	0.001072	496.83430020841973	85.042	0.53651	85.042	84.716	85.252	0					20	12	2	0	0	0	0.028476	1	8923	8923		25.45	0	1	400450	+		45423	22428	37606	37629	48909	48909					0.15807506853229825
QIIAHVADDQL	11	Unmodified	_QIIAHVADDQL_					0	0	0			REV__ENST00000337619.9_1_7:100797788-100800047:+|nuORF	REV__ENST00000337619.9_1_7:100797788-100800047:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	408.2203674316406	3	408.21906	1221.63535	0.59028	0.00024096	-0.59656	-0.00024353	-0.0062799	-2.5636E-06	408.2187984092312	51.809	1.2836	51.809	51.544	52.828	0					75	29	6	0	0	0	0.32052	1	4046	4046		66.92	9.7715	1	6648600	+		45424	24600	37607	37630	48910	48910					0.03339880700832509
QIIAKKFNPY	10	Unmodified	_QIIAKKFNPY_					0	0	0			REV__tr|A0A7D6VRY3|A0A7D6VRY3_9CLOTTniQfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20755PE=4SV=1	REV__tr|A0A7D6VRY3|A0A7D6VRY3_9CLOTTniQfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20755PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	611.3515014648438	2	611.353148	1220.69174	0.023819	1.4562E-05	-3.3802	-0.0020665	-3.3563	-0.0020519	611.3510154511714	125.27	1.2863	125.03	124.66	125.95	-0.2359					68	25	4	0	0	0	0.72319	1	12222	12222		27.882	5.3026	1	393690	+		45425	31455	37608	37631	48911	48911					0.09022553328168215
QIIHAGKKP	9	Unmodified	_QIIHAGKKP_					0	0	0		ENSG00000204611|ENST00000600228|ZNF616	ENSG00000204611|ENST00000600228|ZNF616	ENSG00000204611|ENST00000600228|ZNF616	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.7626037597656	2	496.306001	990.597449	0.19603	9.7293E-05	-0.19664	-9.7592E-05	-0.00060237	-2.9896E-07	496.3056518939348	63.109	0.43468	63.109	62.902	63.337	0					16	10	2	0	0	0	0.027462	1	5654	5654		21.96	3.6355	1	223640			45426	9009	37609	37632	48912	48912					0.10177459296698999
QIIKLKCCI	9	Unmodified	_QIIKLKCCI_					0	0	0			REV__ENSG00000225805|ENST00000530210|DEFB131B	REV__ENSG00000225805|ENST00000530210|DEFB131B	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.254638671875	2	531.314123	1060.61369	-0.7967	-0.0004233	-0.096084	-5.1051E-05	-0.89279	-0.00047435	531.3139307310898	34.117	0.33595	34.117	33.921	34.257	0					14	6	3	0	0	0	0.027456	1	1614	1614		47.916	24.873	1	163270	+		45427	23365	37610	37633	48913	48913					0.08581081146917313
QIILKFEKL	9	Unmodified	_QIILKFEKL_					0	0	0			REV__tr|A0A7D6ZH07|A0A7D6ZH07_9CLOT[FeFe]hydrogenaseH-clustermaturationGTPaseHydFOS=ClostridiumintestinaleOX=36845GN=hydFPE=4SV=1	REV__tr|A0A7D6ZH07|A0A7D6ZH07_9CLOT[FeFe]hydrogenaseH-clustermaturationGTPaseHydFOS=ClostridiumintestinaleOX=36845GN=hydFPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.8350830078125	2	566.360442	1130.70633	0.28029	0.00015875	-4.2242	-0.0023924	-3.9439	-0.0022337	566.3575240088321	31.183	0.48037	31.183	30.979	31.46	0					19	9	3	0	0	0	0.027462	1	1270	1270		44.117	0	1	83126	+		45428	32014	37611	37634	48914	48914					0.1462062547630012
QIINRKPREK	10	Unmodified	_QIINRKPREK_					0	0	0			REV__JARID2|p.F790Lfs*33|1|0.15|ENSG00000008083|chr6:15501331-15501331|C/-|frameshift_variant	REV__JARID2|p.F790Lfs*33|1|0.15|ENSG00000008083|chr6:15501331-15501331|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	641.3855590820312	2	641.391128	1280.7677	-5.8575	-0.0037569	-4.1145	-0.002639	-9.9719	-0.0063959	641.3881952810442	160.86	1.0987	160.63	160.28	161.38	-0.22696					41	21	3	0	0	0	0.86416	1	16373	16373		10.866	0.6003	1	31932	+		45429	16443	37612	37635	48915	48915					0.13854950228324014
QIINRKPREK	10	Unmodified	_QIINRKPREK_					0	0	0			REV__JARID2|p.F790Lfs*33|1|0.15|ENSG00000008083|chr6:15501331-15501331|C/-|frameshift_variant	REV__JARID2|p.F790Lfs*33|1|0.15|ENSG00000008083|chr6:15501331-15501331|C/-|frameshift_variant	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	641.391128	1280.7677	-5.8575	-0.0037569	-4.1145	-0.002639	-9.9719	-0.0063959	641.3881952810442	160.86	1.0987	160.63	160.28	161.38	-0.22696	0	0	NaN	10.866	41	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31932	+		45430	16443	37612	37635							0.13854950228324014
QIIPIGGAVS	10	Unmodified	_QIIPIGGAVS_					0	0	0			REV__tr|A0A7D6VQH3|A0A7D6VQH3_9CLOThomoserinedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21035PE=3SV=1	REV__tr|A0A7D6VQH3|A0A7D6VQH3_9CLOThomoserinedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21035PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	477.7843322753906	2	477.784567	953.554582	-1.3623	-0.00065089	1.0601	0.00050652	-0.30217	-0.00014437	477.78500123500345	52.573	1.6304	49.76	49.196	50.826	-2.8129					73	32	4	0	0	0	0.55359	1	3511	3511		47.657	0	1	300580	+		45431	31326	37613	37636	48916	48916					0.07594644448624877
QIIPIPKNKE	10	Unmodified	_QIIPIPKNKE_					0	0	0		ENST00000444939.1_1_3:196050684-196051038:+|nuORF	ENST00000444939.1_1_3:196050684-196051038:+|nuORF	ENST00000444939.1_1_3:196050684-196051038:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	591.3199462890625	2	590.358431	1178.70231	-0.58238	-0.00034381	-0.019193	-1.1331E-05	-0.60157	-0.00035514	590.3583417091484	106.06	0.89801	105.62	105.35	106.25	-0.43642					23	17	2	0	0	0	0.027028	1	9841	9841		31.53	20.019	1	24576			45432	11965	37614	37637	48917	48917					0.1201053598258568
QIIRKALTEE	10	Unmodified	_QIIRKALTEE_					0	0	0		IMPA2|p.V54*|1|0.07|ENSG00000141401|chr18:11999115-11999145|TTGTGACAGAAACAGATCACCTTGTGGAAGA/-|frameshift_variant;ENSG00000141401|ENST00000269159|IMPA2	IMPA2|p.V54*|1|0.07|ENSG00000141401|chr18:11999115-11999145|TTGTGACAGAAACAGATCACCTTGTGGAAGA/-|frameshift_variant	IMPA2|p.V54*|1|0.07|ENSG00000141401|chr18:11999115-11999145|TTGTGACAGAAACAGATCACCTTGTGGAAGA/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.8826904296875	3	400.903072	1199.68739	1.2092	0.00048479	-1.2648	-0.00050706	-0.055545	-2.2268E-05	400.9025164128876	53.108	1.4333	53.108	52.259	53.692	0					59	32	3	0	0	0	0.026694	1	4096	4096		38.754	7.1193	1	1689400			45433	4908	37615	37638	48918	48918					0.0955304411461384
QIISHMHPIL	10	Unmodified	_QIISHMHPIL_					0	0	0			REV__ENSG00000105576|ENST00000425528|TNPO2	REV__ENSG00000105576|ENST00000425528|TNPO2	MULTI-SECPEP	OvCa99_classI_Rep5	1	595.807861328125	2	594.831526	1187.6485	1.5505	0.00092231	-1.4284	-0.00084967	0.12211	7.2636E-05	594.8305075261264	90.803	1.149	90.803	90.31	91.459	0					52	28	3	0	0	0	0.027056	1	9809	9809		35.618	0	1	999770	+		45434	17738	37616	37639	48919	48919					0.06218040279259185
QIIVALKSEE	10	Unmodified	_QIIVALKSEE_					0	0	0		ENSG00000171302|ENST00000392446|CANT1;nc|ENSG00000171302|Q8WVQ1-3|CANT1	ENSG00000171302|ENST00000392446|CANT1	ENSG00000171302|ENST00000392446|CANT1	MULTI-SECPEP	OvCa9_classI_Rep2	2	566.31201171875	2	565.326796	1128.63904	-0.33557	-0.00018971	-1.0523	-0.00059487	-1.3878	-0.00078458	565.3261407512895	59.395	1.3046	56.615	56.505	57.809	-2.7801					37	24	2	0	0	0	0.026739	1	4361	4361		37.508	9.4267	1	501460			45435	7190	37617	37640	48920	48920					0.07986550474720389
QIIVRRRV	8	Unmodified	_QIIVRRRV_					0	0	0			REV__nc|ENSG00000145362|Q01484-7|ANK2	REV__nc|ENSG00000145362|Q01484-7|ANK2	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.7966918945312	2	520.345992	1038.67743	0.1136	5.911E-05	-2.7687	-0.0014407	-2.6551	-0.0013816	520.3434922091753	80.412	1.0783	78.089	77.929	79.007	-2.3226					27	20	2	0	0	0	0.028476	1	4407	4407		25.45	6.0902	1	51062	+		45436	28913	37618	37641	48921	48921					0.15963945690555192
QIKEELFAIT	10	Unmodified	_QIKEELFAIT_					0	0	0		ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	ENSG00000133302|ENST00000265140|SLF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.3056640625	2	596.334621	1190.65469	-0.30825	-0.00018382	-2.9875	-0.0017816	-3.2958	-0.0019654	596.3325092485176	48.211	0.47123	48.211	47.984	48.455	0					15	10	3	0	0	0	0.026802	1	3515	3515		26.693	5.0072	1	108520			45437	4216	37619	37642	48922	48922					0.06698836991745338
QIKENQLVYG	10	Unmodified	_QIKENQLVYG_					0	0	0			REV__ENSG00000187210|ENST00000376730|GCNT1	REV__ENSG00000187210|ENST00000376730|GCNT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.3068237304688	2	596.322045	1190.62954	0.16605	9.902E-05	-0.17625	-0.0001051	-0.010198	-6.0814E-06	596.3219357967507	52.606	0.26323	52.606	52.39	52.653	0					9	5	2	0	0	0	0.026659	1	4112	4112		30.318	0	1	103710	+		45438	22635	37620	37643	48923	48923					0.041847821891678905
QIKKLSLYIY	10	Unmodified	_QIKKLSLYIY_					0	0	0		tr|A0A553SUK7|A0A553SUK7_NIACIRodshape-determiningproteinRodAOS=NialliacirculansOX=1397GN=CEQ21_01370PE=4SV=1	tr|A0A553SUK7|A0A553SUK7_NIACIRodshape-determiningproteinRodAOS=NialliacirculansOX=1397GN=CEQ21_01370PE=4SV=1	tr|A0A553SUK7|A0A553SUK7_NIACIRodshape-determiningproteinRodAOS=NialliacirculansOX=1397GN=CEQ21_01370PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	634.8594970703125	2	634.884281	1267.75401	-0.47479	-0.00030143	-0.043789	-2.7801E-05	-0.51858	-0.00032924	634.8846297926091	96.974	0.30858	95.145	95.036	95.345	-1.8286					7	5	2	0	0	0	0.026523	1	6419	6419		62.107	0	1	11987			45439	34618	37621	37644	48924	48924					0.13084279676513688
QIKKWFCFGQW	11	Unmodified	_QIKKWFCFGQW_					0	0	0			REV__ENST00000502773.5_1_4:157689087-157693884:-|nuORF	REV__ENST00000502773.5_1_4:157689087-157693884:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.2171630859375	3	490.916547	1469.72781	-0.9377	-0.00046033	3.5727	0.0017539	2.635	0.0012936	490.9195401956666	42.235	0.39059	42.235	41.982	42.372	0					12	8	2	0	0	0	0.02625	1	2700	2700		9.2118	0	1	57244	+		45440	26830	37622	37645	48925	48925					0.01173687233358578
QIKLFQKWQKR	11	Unmodified	_QIKLFQKWQKR_					0	0	0			REV__ENST00000466974.5_1_20:5922633-5923195:-|nuORF	REV__ENST00000466974.5_1_20:5922633-5923195:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	501.6333312988281	3	501.636661	1501.88815	-7.106	-0.0035646	1.8372	0.00092162	-5.2688	-0.002643	501.6377394738275	160.29	4.0787	158.96	156.4	160.48	-1.3316					164	89	3	0	0	0	0.72582	1	13897	13897		3.4087	0.55691	1	75042	+		45441	26191	37623	37646	48926	48926					0.15728358221895178
QIKLIETE	8	Unmodified	_QIKLIETE_					0	0	0		ENSG00000148356|ENST00000300417|LRSAM1;nc|ENSG00000148356|Q6UWE0-3|LRSAM1;ENST00000483302.5_1_9:130248105-130265175:+|nuORF	ENSG00000148356|ENST00000300417|LRSAM1	ENSG00000148356|ENST00000300417|LRSAM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.7646484375	2	487.281857	972.549162	-0.34745	-0.00016931	-2.1554	-0.0010503	-2.5029	-0.0012196	487.2803781370194	29.951	0.30121	29.951	29.785	30.086	0					8	5	2	0	0	0	0.028476	1	1097	1097		27.882	0	1	26385			45442	5403	37624	37647	48927	48927					0.0617892086613665
QIKLIRFSLT	10	Unmodified	_QIKLIRFSLT_					0	0	0			REV__ENST00000472571.2_1_X:55185560-55187609:-|nuORF	REV__ENST00000472571.2_1_X:55185560-55187609:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	406.7531433105469	3	406.923807	1217.74959	0.87749	0.00035707	-0.21552	-8.7699E-05	0.66197	0.00026937	406.9234769421292	73.768	1.2616	71.369	71.001	72.263	-2.3999					33	23	2	0	0	0	0.027117	1	6078	6078		16.007	0	1	62069	+		45443	24542	37625	37648	48928	48928					0.14942815253607478
QIKLTHSK	8	Unmodified	_QIKLTHSK_					0	0	0			REV__ENSG00000138152|ENST00000260723|BTBD16	REV__ENSG00000138152|ENST00000260723|BTBD16	MULTI-MSMS	OvCa99_classI_Rep5	1	477.7901306152344	2	477.790184	953.565815	-0.88155	-0.0004212	0.5504	0.00026297	-0.33115	-0.00015822	477.7903365837511	34.311	1.1801	34.311	34.113	35.293	0					47	24	4	0	0	0	0.6345	1	1636	1636		56.721	1.2168	1	1306900	+		45444	19515	37626	37649	48929	48929					0.08717466542748298
QIKMKMILD	9	Unmodified	_QIKMKMILD_					0	0	0			REV__nc|ENSG00000140403|Q8WW22-3|DNAJA4	REV__nc|ENSG00000140403|Q8WW22-3|DNAJA4	MULTI-SECPEP	OvCa9_classI_Rep2	2	560.3284912109375	2	560.316863	1118.61917	-0.014703	-8.2384E-06	-0.19148	-0.00010729	-0.20618	-0.00011553	560.3165608754673	74.095	1.7244	72.124	71.64	73.364	-1.9711					63	32	3	0	0	0	0.027462	1	6019	6019		45.952	25.005	1	220940	+		45445	28894	37627	37650	48930	48930					0.06460759938750016
QIKNMVASIV	10	Unmodified	_QIKNMVASIV_					0	0	0		tr|A0A7D6ZP80|A0A7D6ZP80_9CLOTHK97gp10familyphageproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19210PE=4SV=1	tr|A0A7D6ZP80|A0A7D6ZP80_9CLOTHK97gp10familyphageproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19210PE=4SV=1	tr|A0A7D6ZP80|A0A7D6ZP80_9CLOTHK97gp10familyphageproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19210PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.8108520507812	2	551.818084	1101.62162	0.12081	6.6665E-05	-3.4336	-0.0018947	-3.3128	-0.0018281	551.8164873212205	104.49	1.2375	103.92	103.72	104.96	-0.57639					47	24	3	0	0	0	0.026635	1	9774	9774		39.253	0	1	52838			45446	35689	37628	37651	48931	48931					0.07486931668040597
QIKQNLKSI	9	Unmodified	_QIKQNLKSI_					0	0	0			REV__nc|ENSG00000023287|Q8TDY2-2|RB1CC1	REV__nc|ENSG00000023287|Q8TDY2-2|RB1CC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3671875	2	536.329673	1070.64479	-0.32954	-0.00017674	3.6319	0.0019479	3.3024	0.0017712	536.3315417384969	50.914	0.47905	50.914	50.685	51.164	0					17	10	3	0	0	0	0.027452	1	3866	3866		58.23	12.258	1	346530	+		45447	16555	37629	37652	48932	48932					0.11229693777045213
QIKQNLKSI	9	Unmodified	_QIKQNLKSI_					0	0	0			REV__nc|ENSG00000023287|Q8TDY2-2|RB1CC1	REV__nc|ENSG00000023287|Q8TDY2-2|RB1CC1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	536.329673	1070.64479	-1.98	-0.0010619	1.3929	0.00074703	-0.5871	-0.00031488	536.3304811702667	53.516	0.8456	50.702	50.379	51.225	-2.8139	-0.0039942	-0.00022235	NaN	58.23	28	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33701	+		45448	16555	37629	37652							0.11229693777045213
QIKQNLKSI	9	Unmodified	_QIKQNLKSI_					0	0	0			REV__nc|ENSG00000023287|Q8TDY2-2|RB1CC1	REV__nc|ENSG00000023287|Q8TDY2-2|RB1CC1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	536.329673	1070.64479	-1.7612	-0.00094459	1.5933	0.00085452	-0.16794	-9.007E-05	536.330414036262	53.749	0.76671	50.502	50.314	51.081	-3.2474	-0.20405	-7.3815E-06	NaN	58.23	35	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109570	+		45449	16555	37629	37652							0.11229693777045213
QIKRGLHLQAL	11	Unmodified	_QIKRGLHLQAL_					0	0	0		ENSG00000140093|ENST00000261994|SERPINA10	ENSG00000140093|ENST00000261994|SERPINA10	ENSG00000140093|ENST00000261994|SERPINA10	MULTI-MSMS	OvCa9_classI_Rep3	3	638.89990234375	2	638.896046	1275.77754	-0.66109	-0.00042237	-0.6696	-0.00042781	-1.3307	-0.00085017	638.895521609319	100.15	2.0643	98.542	98.17	100.23	-1.6053					93	40	3	0	0	0	0.69455	1	6776	6776		31.53	1.0262	1	317300			45450	4821	37630	37653	48933	48933					0.1506813823370976
QIKRLLETY	9	Unmodified	_QIKRLLETY_					0	0	0		ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.7595825195312	2	582.342781	1162.67101	-0.69862	-0.00040684	-2.5059	-0.0014593	-3.2046	-0.0018661	582.3409107029335	44.747	0.35749	44.747	44.528	44.886	0					10	7	2	0	0	0	0.027462	1	3055	3055		30.504	1.3336	1	57570			45451	3453	37631	37654	48934	48934					0.09617962948527747
QIKSFVRLH	9	Unmodified	_QIKSFVRLH_					0	0	0			REV__tr|A0A7D6ZV03|A0A7D6ZV03_9CLOTFe-onlynitrogenaseaccessoryproteinAnfOOS=ClostridiumintestinaleOX=36845GN=HZF06_13440PE=4SV=1	REV__tr|A0A7D6ZV03|A0A7D6ZV03_9CLOTFe-onlynitrogenaseaccessoryproteinAnfOOS=ClostridiumintestinaleOX=36845GN=HZF06_13440PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	564.336669921875	2	564.337833	1126.66111	-0.39583	-0.00022338	-0.35419	-0.00019988	-0.75002	-0.00042327	564.3376146589652	44.366	0.58112	44.366	44.169	44.75	0					29	12	3	0	0	0	0.35444	1	2994	2994		56.721	3.3696	1	1351300	+		45452	32233	37632	37655	48935	48935					0.10284819733806216
QIKSFVRLH	9	Unmodified	_QIKSFVRLH_					0	0	0			REV__tr|A0A7D6ZV03|A0A7D6ZV03_9CLOTFe-onlynitrogenaseaccessoryproteinAnfOOS=ClostridiumintestinaleOX=36845GN=HZF06_13440PE=4SV=1	REV__tr|A0A7D6ZV03|A0A7D6ZV03_9CLOTFe-onlynitrogenaseaccessoryproteinAnfOOS=ClostridiumintestinaleOX=36845GN=HZF06_13440PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	564.337833	1126.66111	-0.39583	-0.00022338	-0.35419	-0.00019988	-0.75002	-0.00042327	564.3376146589652	44.366	0.58112	44.366	44.169	44.75	0	0	0	NaN	56.721	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1351300	+		45453	32233	37632	37655							0.10284819733806216
QIKYLLKV	8	Unmodified	_QIKYLLKV_					0	0	0			REV__ENSG00000143278|ENST00000367412|F13B	REV__ENSG00000143278|ENST00000367412|F13B	MULTI-MSMS	OvCa9_classI_Rep2	2	502.82830810546875	2	502.828778	1003.643	-0.59297	-0.00029816	0.058601	2.9466E-05	-0.53437	-0.0002687	502.82872794883195	97.43	2.3707	96.471	96.118	98.489	-0.95857					114	47	4	0	0	0	0.30448	1	8830	8830		106.42	8.9425	1	607580	+		45454	19825	37633	37656	48936	48936					0.14132684759090353
QILAARAIHNI	11	Unmodified	_QILAARAIHNI_					0	0	0		ENST00000482800.5_1_3:57261911-57301862:+|nuORF;ENSG00000157500|ENST00000288266|APPL1	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	ENST00000482800.5_1_3:57261911-57301862:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	610.3704833984375	2	610.367121	1218.71969	-0.3895	-0.00023774	3.3252	0.0020296	2.9357	0.0017919	610.3689779820004	39.478	0.90995	39.478	39.196	40.106	0					54	20	4	0	0	0	0.69015	1	2318	2318		37.812	14.289	1	1235300			45455	5895	37634	37657	48937	48937					0.11907876308282539
QILCCPYSI	9	Unmodified	_QILCCPYSI_					0	0	0			REV__ENSG00000170929|ENST00000641627|OR1M1	REV__ENSG00000170929|ENST00000641627|OR1M1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.287353515625	2	520.251188	1038.48782	-1.271	-0.00066123	-1.3473	-0.00070093	-2.6183	-0.0013622	520.2503864359228	92.727	0.30159	90.219	90.061	90.362	-2.5072					7	5	2	0	0	0	0.027462	1	8071	8071		30.504	0	1	9389	+		45456	21579	37635	37658	48938	48938					-0.02988050429166833
QILDKSTKGK	10	Unmodified	_QILDKSTKGK_					0	0	0		ENSG00000118600|ENST00000261234|RXYLT1;ENST00000536219.5_1_12:64173626-64178865:+|nuORF	ENSG00000118600|ENST00000261234|RXYLT1	ENSG00000118600|ENST00000261234|RXYLT1	MULTI-MSMS	OvCa9_classI_Rep3	3	559.3333740234375	2	559.332413	1116.65027	0.059927	3.3519E-05	2.2701	0.0012697	2.33	0.0013032	559.3337743770333	105.67	2.6036	104.33	103.89	106.49	-1.3482					139	50	4	0	0	0	0.28422	1	7438	7438		82.75	6.5808	1	6929000			45457	3318	37636	37659	48939	48939					0.09661372568848492
QILEILRF	8	Unmodified	_QILEILRF_					0	0	0		ENSG00000047410|ENST00000367478|TPR;ENST00000481347.1_1_1:186312376-186313186:-|nuORF	ENSG00000047410|ENST00000367478|TPR	ENSG00000047410|ENST00000367478|TPR	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.2940673828125	2	516.316035	1030.61752	-0.45636	-0.00023563	-3.8357	-0.0019805	-4.2921	-0.0022161	516.3139282069325	51.768	1.4103	48.595	48.323	49.733	-3.1734					62	27	4	0	0	0	0.028476	1	3191	3191		17.365	0	1	355690			45458	1144	37637	37660	48940	48940					0.10343210236646883
QILHRNRNI	9	Unmodified	_QILHRNRNI_					0	0	0			REV__tr|A0A7D7A2U2|A0A7D7A2U2_9CLOTAcyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18845PE=4SV=1	REV__tr|A0A7D7A2U2|A0A7D7A2U2_9CLOTAcyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18845PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	582.3350219726562	2	582.341438	1162.66832	-2.6888	-0.0015658	1.1642	0.00067797	-1.5246	-0.00088782	582.8431255912589	88.483	0.40543	85.88	85.781	86.186	-2.6027					12	7	2	0	0	0	0.027455	1	7550	7550		42.396	6.7778	1	62892	+		45459	32551	37638	37661	48941	48941					0.0934955233421988
QILKQRRR	8	Unmodified	_QILKQRRR_					0	0	0		nc|ENSG00000123064|Q8TDD1-2|DDX54;ENSG00000123064|ENST00000306014|DDX54	nc|ENSG00000123064|Q8TDD1-2|DDX54	nc|ENSG00000123064|Q8TDD1-2|DDX54	MULTI-SECPEP	OvCa9_classI_Rep2	2	550.2785034179688	2	549.354348	1096.69414	-0.026158	-1.437E-05	1.7937	0.00098539	1.7676	0.00097102	549.3551843768092	94.72	1.2805	93.621	93.312	94.593	-1.0995					63	25	4	0	0	0	0.028476	1	8454	8454		31.955	6.5047	1	187970			45460	3567	37639	37662	48942	48942					0.14966446576499948
QILLKSKLL	9	Unmodified	_QILLKSKLL_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.78466796875	2	528.362985	1054.71142	-0.12454	-6.5801E-05	-0.49332	-0.00026065	-0.61786	-0.00032645	528.3626912844421	56.914	0.34917	56.914	56.788	57.138	0					12	7	2	0	0	0	0.027462	1	4752	4752		29.15	0	1	117450			45461	1219	37640	37663	48943	48943					0.1862492933894373
QILLLMHLL	9	Unmodified	_QILLLMHLL_					0	0	0		ENST00000486463.5_1_2:96687909-96693504:-|nuORF;nc|ENSG00000186281|Q6NUI2|GPAT2;ENSG00000186281|ENST00000434632|GPAT2;ENST00000484440.5_1_2:96688852-96698107:-|nuORF;ENST00000471757.5_1_2:96687909-96690664:-|nuORF;nc|ENSG00000186281|Q6NUI2-5|GPAT2;nc|ENSG00000186281|Q6NUI2-3|GPAT2;ENST00000482704.1_1_2:96689607-96690664:-|nuORF	ENST00000486463.5_1_2:96687909-96693504:-|nuORF	ENST00000486463.5_1_2:96687909-96693504:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.3456420898438	2	547.343738	1092.67292	1.5966	0.00087392	3.8121	0.0020865	5.4088	0.0029605	547.3455876161022	125.36	0.68175	125.36	125.17	125.85	0					31	16	2	0	0	0	0.027462	1	14510	14510		25.45	0	1	220900			45462	8327	37641	37664	48944	48944					0.13029300432776836
QILLNIVLA	9	Unmodified	_QILLNIVLA_					0	0	0			REV__ENST00000306602.2_1_4:76943895-76944535:-|nuORF	REV__ENST00000306602.2_1_4:76943895-76944535:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.76812744140625	2	498.826235	995.637917	-0.20414	-0.00010183	-0.97999	-0.00048884	-1.1841	-0.00059068	498.8254154926687	66.728	1.1363	63.237	63.049	64.186	-3.4902					35	22	2	0	0	0	0.027462	1	4873	4873		30.504	6.3009	1	140490	+		45463	24297	37642	37665	48945	48945					0.1399238089645678
QILNGTEEIIV	11	Unmodified	_QILNGTEEIIV_					0	0	0			REV__nc|ENSG00000005175|Q9H6T3-3|RPAP3	REV__nc|ENSG00000005175|Q9H6T3-3|RPAP3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	409.91888427734375	3	410.230966	1227.67107	0.68926	0.00028276	3.0042	0.0012324	3.6934	0.0015152	410.2324979926014	21.262	0.52251	19.923	19.697	20.22	-1.3386					16	10	2	0	0	0	0.026033	1	165	165		22.562	13.762	1	15072	+		45464	16394	37643	37666	48946	48946					0.06633918157854168
QILNKLYTK	9	Unmodified	_QILNKLYTK_					0	0	0		tr|A0A7D6VT71|A0A7D6VT71_9CLOTMethyltransferasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09430PE=4SV=1	tr|A0A7D6VT71|A0A7D6VT71_9CLOTMethyltransferasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09430PE=4SV=1	tr|A0A7D6VT71|A0A7D6VT71_9CLOTMethyltransferasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09430PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	560.8418579101562	2	560.839874	1119.66519	2.2494	0.0012616	-0.94581	-0.00053045	1.3036	0.00073112	560.8394640465756	110.1	0.811	110.1	109.73	110.54	0					41	17	4	0	0	0	0.1944	1	12485	12485		77.318	19.088	1	1051400			45465	35093	37644	37667	48947	48947					0.11014864436833705
QILPPFSK	8	Unmodified	_QILPPFSK_					0	0	0			REV__ENST00000571688.5_2_16:11643218-11643479:-|nuORF	REV__ENST00000571688.5_2_16:11643218-11643479:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	465.7980651855469	2	465.276378	928.538203	-0.98958	-0.00046043	-3.2331	-0.0015043	-4.2227	-0.0019647	465.2747503597481	77.276	1.1214	74.907	74.56	75.682	-2.3689					60	21	4	0	0	0	0.028476	1	4088	4088		6.3127	0	1	433650	+		45466	27745	37645	37668	48948	48948					0.07107563282522733
QILRVKDTD	9	Unmodified	_QILRVKDTD_					0	0	0		nc|ENSG00000254893|A6NIZ1|RAP1BL;nc|ENSG00000127314|P61224-4|RAP1B;nc|ENSG00000127314|P61224-3|RAP1B;ENSG00000127314|ENST00000250559|RAP1B	nc|ENSG00000254893|A6NIZ1|RAP1BL	nc|ENSG00000254893|A6NIZ1|RAP1BL	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2708740234375	2	544.308938	1086.60332	2.3845	0.0012979	4.0881	0.0022252	6.4726	0.0035231	544.311097458269	89.068	0.51048	89.068	88.883	89.394	0					29	12	3	0	0	0	0.027462	1	9514	9514		30.318	3.6248	1	2182600			45467	15354	37646	37669	48949	48949					0.06348513017701407
QILRVKDTD	9	Unmodified	_QILRVKDTD_					0	0	0		nc|ENSG00000254893|A6NIZ1|RAP1BL;nc|ENSG00000127314|P61224-4|RAP1B;nc|ENSG00000127314|P61224-3|RAP1B;ENSG00000127314|ENST00000250559|RAP1B	nc|ENSG00000254893|A6NIZ1|RAP1BL	nc|ENSG00000254893|A6NIZ1|RAP1BL	MULTI-MATCH	OvCa9_classI_Rep2	2		2	544.308938	1086.60332	1.2966	0.00070576	3.1117	0.0016937	4.4083	0.0023995	544.812104474846	90.57	0.19704	89.268	89.176	89.373	-1.302	0.22139	-0.00058051	NaN	30.318	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4095.5			45468	15354	37646	37669							0.06348513017701407
QILRVKDTD	9	Unmodified	_QILRVKDTD_					0	0	0		nc|ENSG00000254893|A6NIZ1|RAP1BL;nc|ENSG00000127314|P61224-4|RAP1B;nc|ENSG00000127314|P61224-3|RAP1B;ENSG00000127314|ENST00000250559|RAP1B	nc|ENSG00000254893|A6NIZ1|RAP1BL	nc|ENSG00000254893|A6NIZ1|RAP1BL	MULTI-MATCH	OvCa9_classI_Rep3	3		2	544.308938	1086.60332	-0.72506	-0.00039466	-1.2492	-0.00067995	-1.9743	-0.0010746	544.8082548630737	90.885	0.659	88.805	88.516	89.175	-2.0805	-0.24214	-0.0053278	NaN	30.318	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31366			45469	15354	37646	37669							0.06348513017701407
QILSRLPKIPC	11	Unmodified	_QILSRLPKIPC_					0	0	0		nc|ENSG00000107242|O14986-2|PIP5K1B	nc|ENSG00000107242|O14986-2|PIP5K1B	nc|ENSG00000107242|O14986-2|PIP5K1B	MULTI-MSMS	OvCa9_classI_Rep3	3	634.8792114257812	2	634.381383	1266.74821	-6.5589	-0.0041609	0.12778	8.106E-05	-6.4311	-0.0040798	634.3812595385845	164.92	1.7179	163.51	162.81	164.52	-1.4083					155	61	3	0	0	0	0.72459	1	14358	14358		20.947	0	1	179530			45470	14945	37647	37670	48950	48950					0.1255085789318855
QILTKALLI	9	Unmodified	_QILTKALLI_					0	0	0		ENST00000342435.8_1_3:146233506-146233563:-|nuORF	ENST00000342435.8_1_3:146233506-146233563:-|nuORF	ENST00000342435.8_1_3:146233506-146233563:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	506.84295654296875	2	506.841885	1011.66922	3.2589	0.0016518	-1.1434	-0.00057952	2.1155	0.0010722	506.841159841659	88.505	0.98004	88.505	88.255	89.235	0					59	23	4	0	0	0	0.036687	1	9430	9430		129.68	0	1	3509200			45471	10580	37648	37671	48951	48951					0.16384953930560187
QILTRQLQEK	10	Unmodified	_QILTRQLQEK_					0	0	0		ENSG00000093183|ENST00000264454|SEC22C	ENSG00000093183|ENST00000264454|SEC22C	ENSG00000093183|ENST00000264454|SEC22C	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.752685546875	3	419.582221	1255.72483	0.51963	0.00021803	-0.66155	-0.00027758	-0.14192	-5.9549E-05	419.5819139430353	62.657	0.5577	62.657	62.418	62.976	0					20	13	2	0	0	0	0.026676	1	5556	5556		38.714	2.3964	1	855330			45472	1910	37649	37672	48952	48952					0.10720135380188367
QILYAIFQP	9	Unmodified	_QILYAIFQP_					0	0	0			REV__tr|A0A7D7A0P6|A0A7D7A0P6_9CLOTasparaginesynthase(glutamine-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=asnBPE=3SV=1	REV__tr|A0A7D7A0P6|A0A7D7A0P6_9CLOTasparaginesynthase(glutamine-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=asnBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.8290405273438	2	546.808042	1091.60153	0.54704	0.00029913	-3.8802	-0.0021217	-3.3331	-0.0018226	546.8057455971694	96.655	1.3075	94.229	93.862	95.169	-2.4256					45	25	2	0	0	0	0.027462	1	8633	8633		30.504	0	1	68123	+		45473	32451	37650	37673	48953	48953					0.0593950399975256
QILYSHLKF	9	Unmodified	_QILYSHLKF_					0	0	0			REV__ENSG00000176222|ENST00000587539|ZNF404	REV__ENSG00000176222|ENST00000587539|ZNF404	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.8065795898438	2	574.826766	1147.63898	0.023284	1.3384E-05	-3.3628	-0.001933	-3.3395	-0.0019196	574.8247774514753	67.353	0.58666	67.353	67.136	67.723	0					34	14	3	0	0	0	0.027462	1	6287	6287		20.947	6.8098	1	1533500	+		45474	21941	37651	37674	48954	48954					0.07106595265372562
QIMARLQEE	9	Unmodified	_QIMARLQEE_					0	0	0		nc|ENSG00000139737|Q8ND83-3|SLAIN1;nc|ENSG00000139737|Q8ND83-2|SLAIN1;nc|ENSG00000139737|Q8ND83-4|SLAIN1;nc|ENSG00000139737|Q8ND83|SLAIN1;ENSG00000139737|ENST00000418532|SLAIN1;chr13:77741440-77743016|278|10.86|0.16|6.06|+|ENST00000462234|SLAIN1,SLAIN1	nc|ENSG00000139737|Q8ND83-3|SLAIN1	nc|ENSG00000139737|Q8ND83-3|SLAIN1	MULTI-MSMS	OvCa9_classI_Rep3	3	559.2868041992188	2	559.287148	1116.55974	1.8335	0.0010255	-1.8144	-0.0010148	0.019083	1.0673E-05	559.285935160322	57.961	2.4261	54.834	53.92	56.346	-3.1264					105	62	3	0	0	0	0.67509	1	1776	1776		23.042	1.0826	1	45402			45475	4803	37652	37675	48955	48955					0.006125802489123089
QIMELLVL	8	Unmodified	_QIMELLVL_					0	0	0		ENSG00000137338|ENST00000682144|PGBD1	ENSG00000137338|ENST00000682144|PGBD1	ENSG00000137338|ENST00000682144|PGBD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.2890930175781	2	479.785721	957.55689	0.31941	0.00015325	-2.4993	-0.0011991	-2.1799	-0.0010459	479.7821095758972	67.354	0.31597	67.354	67.212	67.528	0					12	7	2	0	0	0	0.028476	1	6314	6314		31.955	7.7521	1	283990			45476	4579	37653	37676	48956	48956					0.0764135686206373
QIMELLVL	8	Unmodified	_QIMELLVL_					0	0	0		ENSG00000137338|ENST00000682144|PGBD1	ENSG00000137338|ENST00000682144|PGBD1	ENSG00000137338|ENST00000682144|PGBD1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	479.785721	957.55689	-0.65384	-0.0003137	-6.4924	-0.0031149	-7.1462	-0.0034286	479.78211460444345	70.696	1.2633	67.215	66.836	68.099	-3.4812	-0.06937	-0.00052146	NaN	24.203	33	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78110			45477	4579	37653	37676							0.0764135686206373
QINGRLEKKN	10	Unmodified	_QINGRLEKKN_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	OvCa99_classI_Rep5	1	600.3478393554688	2	600.346386	1198.67822	2.761	0.0016576	-0.71307	-0.00042809	2.048	0.0012295	600.3457641485472	100.61	0.95267	100.61	100.32	101.27	0					37	22	2	0	0	0	0.65826	1	11198	11198		23.523	0	1	921610	+		45478	21918	37654	37677	48957	48957					0.0868269554894141
QINKPIDIV	9	Unmodified	_QINKPIDIV_					0	0	0			REV__tr|A0A7D6VR06|A0A7D6VR06_9CLOTAcetolactatesynthaseOS=ClostridiumintestinaleOX=36845GN=ilvBPE=3SV=1	REV__tr|A0A7D6VR06|A0A7D6VR06_9CLOTAcetolactatesynthaseOS=ClostridiumintestinaleOX=36845GN=ilvBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.620849609375	2	520.310949	1038.60735	-0.90947	-0.00047321	0.15538	8.0844E-05	-0.7541	-0.00039236	520.3109919317837	93.635	3.5674	91.673	90.423	93.99	-1.9617					92	71	2	0	0	0	0.027462	1	5868	5868		24.203	12.692	1	51447	+		45479	31376	37655	37678	48958	48958					0.08958602511415847
QINKPIDIV	9	Unmodified	_QINKPIDIV_					0	0	0			REV__tr|A0A7D6VR06|A0A7D6VR06_9CLOTAcetolactatesynthaseOS=ClostridiumintestinaleOX=36845GN=ilvBPE=3SV=1	REV__tr|A0A7D6VR06|A0A7D6VR06_9CLOTAcetolactatesynthaseOS=ClostridiumintestinaleOX=36845GN=ilvBPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	520.310949	1038.60735	0.43958	0.00022872	0.41083	0.00021376	0.85041	0.00044248	520.3103058295708	92.808	1.3917	91.64	91.341	92.732	-1.168	-0.016474	0.00024337	NaN	24.203	35	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34697	+		45480	31376	37655	37678							0.08958602511415847
QINKSLLKI	9	Unmodified	_QINKSLLKI_					0	0	0		nc|ENSG00000064012|Q14790-3|CASP8;nc|ENSG00000064012|Q14790-2|CASP8;ENSG00000064012|ENST00000673742|CASP8;nc|ENSG00000064012|Q14790-4|CASP8;nc|ENSG00000064012|Q14790-9|CASP8;ENST00000471383.5_1_2:202131194-202137540:+|nuORF;nc|ENSG00000064012|Q14790-6|CASP8;nc|ENSG00000064012|Q14790-5|CASP8;nc|ENSG00000064012|Q14790-8|CASP8;nc|ENSG00000064012|Q14790-7|CASP8;ENST00000339403.6_1_2:202123080-202141717:+|nuORF	nc|ENSG00000064012|Q14790-3|CASP8	nc|ENSG00000064012|Q14790-3|CASP8	MULTI-MSMS	OvCa9_classI_Rep3	3	528.8422241210938	2	528.842416	1055.67028	-0.08716	-4.6094E-05	-0.31234	-0.00016518	-0.3995	-0.00021127	528.8421592144327	72.302	1.8827	69.699	69.424	71.307	-2.6023					108	37	4	0	0	0	0.10363	1	3433	3433		96.19	16.739	1	703400			45481	1291	37656	37679	48959	48959					0.14467168299461264
QINTDPRFLL	10	Unmodified	_QINTDPRFLL_					0	0	0			REV__nc|ENSG00000204624|Q9P2K9-2|DISP3	REV__nc|ENSG00000204624|Q9P2K9-2|DISP3	MULTI-MSMS	OvCa9_classI_Rep3	3	608.836181640625	2	608.837862	1215.66117	-3.2591	-0.0019843	1.617	0.00098452	-1.642	-0.00099973	608.8386735835178	151.65	1.4083	150.69	150.4	151.81	-0.95647					78	27	4	0	0	0	0.69073	1	12981	12981		31.53	0	1	213430	+		45482	23174	37657	37680	48960	48960					0.061967749431460106
QIPKKSGVE	9	Unmodified	_QIPKKSGVE_					0	0	0		nc|ENSG00000152404|Q2TBE0-3|CWF19L2;nc|ENSG00000152404|Q2TBE0-2|CWF19L2;ENSG00000152404|ENST00000282251|CWF19L2	nc|ENSG00000152404|Q2TBE0-3|CWF19L2	nc|ENSG00000152404|Q2TBE0-3|CWF19L2	MULTI-MSMS	OvCa9_classI_Rep2	2	493.28631591796875	2	493.287474	984.560395	-0.35771	-0.00017645	1.1821	0.0005831	0.82435	0.00040664	493.2874848537779	48.825	0.99188	46.064	45.679	46.671	-2.7603					42	19	3	0	0	0	0.28934	1	3061	3061		64.207	13.015	1	126270			45483	5619	37658	37681	48961	48961					0.06749742960289495
QIPKVVAAAR	10	Unmodified	_QIPKVVAAAR_					0	0	0		tr|A0A553SFB5|A0A553SFB5_NIACIGlycosylhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_08570PE=4SV=1	tr|A0A553SFB5|A0A553SFB5_NIACIGlycosylhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_08570PE=4SV=1	tr|A0A553SFB5|A0A553SFB5_NIACIGlycosylhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_08570PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.8134765625	2	526.832383	1051.65021	0.26522	0.00013973	2.0466	0.0010782	2.3119	0.001218	526.8336306796166	74.155	0.37968	74.155	73.945	74.324	0					14	9	3	0	0	0	0.026665	1	7330	7330		51.335	19.381	1	748630			45484	33019	37659	37682	48962	48962					0.12645417359476596
QIPLQDVAF	9	Unmodified	_QIPLQDVAF_					0	0	0		nc|ENSG00000187122|O75093-2|SLIT1;ENSG00000187122|ENST00000266058|SLIT1	nc|ENSG00000187122|O75093-2|SLIT1	nc|ENSG00000187122|O75093-2|SLIT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.7643432617188	2	515.782025	1029.5495	-0.76713	-0.00039567	-3.8308	-0.0019759	-4.5979	-0.0023715	515.779568574762	36.141	0.1353	36.141	36.029	36.164	0					4	2	2	0	0	0	0.027462	1	1870	1870		31.955	0	1	157070			45485	8388	37660	37683	48963	48963					0.03590340585992635
QIPNGGTALPE	11	Unmodified	_QIPNGGTALPE_					0	0	0		ENSG00000165821|ENST00000537235|SALL2;nc|ENSG00000165821|Q9Y467|SALL2	ENSG00000165821|ENST00000537235|SALL2	ENSG00000165821|ENST00000537235|SALL2	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.7876586914062	2	548.785296	1095.55604	0.69367	0.00038068	4.4237	0.0024276	5.1173	0.0028083	548.787840350563	35.594	1.9958	32.745	32.391	34.386	-2.849					120	39	4	0	0	0	0.69808	1	1207	1207		30.318	2.4355	1	883440			45486	6604	37661	37684	48964	48964					0.012082337467063553
QIPRAMQTL	9	Unmodified	_QIPRAMQTL_					0	0	0			REV__NFIC-CELF5|5|fusion	REV__NFIC-CELF5|5|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2786865234375	2	529.294776	1056.575	2.1278	0.0011262	-0.093384	-4.9428E-05	2.0344	0.0010768	529.2956346261146	90.533	0.59431	90.533	90.143	90.738	0					27	14	3	0	0	0	0.027462	1	9659	9659		23.042	3.6825	1	581400	+		45487	29249	37662	37685	48965	48965					0.0489749183677759
QIPRHYFSLG	10	Unmodified	_QIPRHYFSLG_					0	0	0		ENSG00000141429|ENST00000269195|GALNT1	ENSG00000141429|ENST00000269195|GALNT1	ENSG00000141429|ENST00000269195|GALNT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	608.3617553710938	2	609.324922	1216.63529	1.5136	0.00092228	-1.1015	-0.00067119	0.41208	0.00025109	609.3242198127415	149.81	0.59254	149.81	149.4	149.99	0					14	11	2	0	0	0	0.027021	1	17537	17537		10.265	0	1	59818			45488	4910	37663	37686	48966	48966					0.035639254914940466
QIPTRKLI	8	Unmodified	_QIPTRKLI_					0	0	0		tr|A0A553SIL1|A0A553SIL1_NIACIGlycosyltransferasefamily4proteinOS=NialliacirculansOX=1397GN=CEQ21_15050PE=4SV=1	tr|A0A553SIL1|A0A553SIL1_NIACIGlycosyltransferasefamily4proteinOS=NialliacirculansOX=1397GN=CEQ21_15050PE=4SV=1	tr|A0A553SIL1|A0A553SIL1_NIACIGlycosyltransferasefamily4proteinOS=NialliacirculansOX=1397GN=CEQ21_15050PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	484.8164367675781	2	484.816202	967.617851	-0.92839	-0.0004501	0.72443	0.00035122	-0.20396	-9.8884E-05	484.81643297200304	55.856	1.9338	53.052	52.482	54.415	-2.804					94	38	4	0	0	0	0.66057	1	3887	3887		51.335	1.3109	1	432030			45489	33394	37664	37687	48967	48967					0.13274629956515582
QIQDFLVKN	9	Unmodified	_QIQDFLVKN_					0	0	0		tr|A0A7D6VPS5|A0A7D6VPS5_9CLOTPolysaccharidedeacetylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12785PE=4SV=1	tr|A0A7D6VPS5|A0A7D6VPS5_9CLOTPolysaccharidedeacetylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12785PE=4SV=1	tr|A0A7D6VPS5|A0A7D6VPS5_9CLOTPolysaccharidedeacetylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12785PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.8273315429688	2	552.806031	1103.59751	1.9538	0.0010801	0.67354	0.00037234	2.6274	0.0014524	552.8059113747291	85.486	0.49947	85.486	85.292	85.791	0					15	11	2	0	0	0	0.027461	1	8970	8970		58.782	0	1	472370			45490	34793	37665	37688	48968	48968					0.04985414506040797
QIQDLRPE	8	Unmodified	_QIQDLRPE_					0	0	0		nc|ENSG00000163395|Q86VF2-4|IGFN1;nc|ENSG00000163395|Q86VF2|IGFN1;IGFN1|p.C894Vfs*30|1|0.1|ENSG00000163395|chr1:201221591-201221592|-/G|frameshift_variant;ENSG00000163395|ENST00000335211|IGFN1;IGFN1|p.G1182Pfs*78|1|0.22|ENSG00000163395|chr1:201227009-201227010|-/CCTGTACTGGCATCCTCTGCACCCCTGACCTCCGT|frameshift_variant	nc|ENSG00000163395|Q86VF2-4|IGFN1	nc|ENSG00000163395|Q86VF2-4|IGFN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.30645751953125	2	499.766906	997.519259	0.27425	0.00013706	-0.94213	-0.00047084	-0.66788	-0.00033379	499.7663456046428	46.002	0.65922	46.002	45.71	46.369	0					23	14	2	0	0	0	0.028476	1	3203	3203		30.504	0	1	1189100			45491	6299	37666	37689	48969	48969					0.020399819208023473
QIQELTLD	8	Unmodified	_QIQELTLD_					0	0	0		NEO1|p.G1147Afs*12|1|0.06|ENSG00000067141|chr15:73288341-73288341|G/-|frameshift_variant;nc|ENSG00000067141|Q92859-3|NEO1;nc|ENSG00000067141|Q92859-2|NEO1;nc|ENSG00000067141|Q92859-4|NEO1;ENSG00000067141|ENST00000261908|NEO1	NEO1|p.G1147Afs*12|1|0.06|ENSG00000067141|chr15:73288341-73288341|G/-|frameshift_variant	NEO1|p.G1147Afs*12|1|0.06|ENSG00000067141|chr15:73288341-73288341|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.77569580078125	2	480.25584	958.497126	0.67896	0.00032607	-1.0847	-0.00052093	-0.40574	-0.00019486	480.2549189422724	114.41	0.52407	113.02	112.89	113.41	-1.3977					10	9	2	0	0	0	0.028476	1	10638	10638		40.573	8.6178	1	14476			45492	1367	37667	37690	48970	48970					0.016217574523693656
QIQELTLD	8	Unmodified	_QIQELTLD_					0	0	0		NEO1|p.G1147Afs*12|1|0.06|ENSG00000067141|chr15:73288341-73288341|G/-|frameshift_variant;nc|ENSG00000067141|Q92859-3|NEO1;nc|ENSG00000067141|Q92859-2|NEO1;nc|ENSG00000067141|Q92859-4|NEO1;ENSG00000067141|ENST00000261908|NEO1	NEO1|p.G1147Afs*12|1|0.06|ENSG00000067141|chr15:73288341-73288341|G/-|frameshift_variant	NEO1|p.G1147Afs*12|1|0.06|ENSG00000067141|chr15:73288341-73288341|G/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	480.25584	958.497126	0.68676	0.00032982	-0.49163	-0.00023611	0.19513	9.3715E-05	480.2553086428942	114.06	0.56821	113.01	112.74	113.3	-1.055	-0.0056843	0.00031415	NaN	31.955	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9920.1			45493	1367	37667	37690							0.016217574523693656
QIQEVQRTP	9	Unmodified	_QIQEVQRTP_					0	0	0		L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|7|1|sense	L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|7|1|sense	L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|7|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.3466796875	2	549.798737	1097.58292	2.0771	0.001142	3.2775	0.001802	5.3546	0.002944	549.8004160399505	86.927	0.41294	86.927	86.761	87.174	0					20	9	3	0	0	0	0.027462	1	9167	9167		32.812	3.6629	1	1633400			45494	14535	37668	37691	48971	48971					0.03803342357900874
QIQEVQRTP	9	Unmodified	_QIQEVQRTP_					0	0	0		L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|7|1|sense	L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|7|1|sense	L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|7|1|sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	549.798737	1097.58292	2.103	0.0011562	3.9697	0.0021825	6.0726	0.0033387	549.7999204993681	88.527	0.78673	87.159	86.888	87.675	-1.3676	0.035807	0.00038375	NaN	51.193	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49877			45495	14535	37668	37691							0.03803342357900874
QIQEVQRTP	9	Unmodified	_QIQEVQRTP_					0	0	0		L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|7|1|sense	L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|7|1|sense	L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|7|1|sense	MULTI-MATCH	OvCa9_classI_Rep3	3		2	549.798737	1097.58292	-0.93385	-0.00051343	4.8812	0.0026837	3.9474	0.0021703	549.8015331762773	89.344	0.65149	87.213	86.994	87.645	-2.1309	0.089492	0.0013861	NaN	51.193	21	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79137			45496	14535	37668	37691							0.03803342357900874
QIQEVQRTP	9	Unmodified	_QIQEVQRTP_					0	0	0		L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|7|1|sense	L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|7|1|sense	L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|7|1|sense	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	549.798737	1097.58292	0.57203	0.0003145	3.1041	0.0017066	3.6761	0.0020211	549.801025187008	89.77	0.69991	87.195	86.9	87.6	-2.575	0.071236	-0.00056805	NaN	51.193	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53083			45497	14535	37668	37691							0.03803342357900874
QIQGSFGEKP	10	Unmodified	_QIQGSFGEKP_					0	0	0			REV__ENSG00000182253|ENST00000336292|SYNM	REV__ENSG00000182253|ENST00000336292|SYNM	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.3479614257812	2	545.780013	1089.54547	0.15682	8.5588E-05	2.0147	0.0010996	2.1716	0.0011852	545.7814345752743	58.111	0.25407	58.111	57.899	58.153	0					7	5	2	0	0	0	0.026968	1	4916	4916		22.58	6.5729	1	69720	+		45498	22274	37669	37692	48972	48972					0.0042825109228488145
QIQIYNGIA	9	Unmodified	_QIQIYNGIA_					0	0	0			REV__ENSG00000128519|ENST00000249284|TAS2R16	REV__ENSG00000128519|ENST00000249284|TAS2R16	MULTI-MSMS	OvCa9_classI_Rep3	3	510.2818603515625	2	510.279649	1018.54475	1.5054	0.00076817	1.6141	0.00082366	3.1195	0.0015918	510.28027552379746	62.202	1.7602	59.168	58.656	60.417	-3.0339					84	39	3	0	0	0	0.53957	1	2281	2281		38.806	6.8513	1	77332	+		45499	18856	37670	37693	48973	48973					0.03621456443227089
QIQNIYCCY	9	Unmodified	_QIQNIYCCY_					0	0	0			REV__ENSG00000188133|ENST00000342743|TMEM215	REV__ENSG00000188133|ENST00000342743|TMEM215	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.326171875	2	574.249177	1146.4838	0.95261	0.00054704	1.182	0.00067879	2.1347	0.0012258	574.2501218660077	150.3	0.59888	150.3	150.14	150.74	0					14	11	2	0	0	0	0.027462	1	17620	17620		11.511	0	1	26944	+		45500	22694	37671	37694	48974	48974					-0.08358139922893315
QIQRALQLE	9	Unmodified	_QIQRALQLE_					0	0	0		ENSG00000092820|ENST00000367075|EZR;EZR-PARP3|1|fusion	ENSG00000092820|ENST00000367075|EZR;EZR-PARP3|1|fusion	EZR-PARP3|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.8650512695312	2	549.81693	1097.61931	-0.63788	-0.00035072	0.064491	3.5458E-05	-0.57339	-0.00031526	549.8169620300309	55.336	0.2943	55.336	55.107	55.401	0					9	6	2	0	0	0	0.027462	1	4504	4504		44.117	0	1	274280			45501	14317;1900	37672	37695	48975	48975					0.07440219254613112
QIQRALQLE	9	Unmodified	_QIQRALQLE_					0	0	0		ENSG00000092820|ENST00000367075|EZR;EZR-PARP3|1|fusion	ENSG00000092820|ENST00000367075|EZR;EZR-PARP3|1|fusion	EZR-PARP3|1|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	549.81693	1097.61931	-0.085882	-4.722E-05	2.3031	0.0012663	2.2172	0.0012191	549.8188621067828	58.181	1.2507	55.389	54.625	55.876	-2.792	0.026695	0.0017717	NaN	44.117	42	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63327			45502	14317;1900	37672	37695							0.07440219254613112
QIQRLFQDK	9	Unmodified	_QIQRLFQDK_					0	0	0			REV__ENSG00000188585|ENST00000623247|CLEC20A	REV__ENSG00000188585|ENST00000623247|CLEC20A	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.3096923828125	2	588.330205	1174.64586	-0.59966	-0.0003528	-4.1944	-0.0024677	-4.794	-0.0028205	588.3268971734171	59.146	0.26041	59.146	58.932	59.192	0					10	6	2	0	0	0	0.027462	1	5056	5056		38.806	17.12	1	1274600	+		45503	22721	37673	37696	48976	48976					0.06551908145934249
QIQRNTNIPS	10	Unmodified	_QIQRNTNIPS_					0	0	0			REV__MAP7D3|p.S512N|1|0.1|ENSG00000129680|chrX:136230845-136230845|C/T|missense_variant	REV__MAP7D3|p.S512N|1|0.1|ENSG00000129680|chrX:136230845-136230845|C/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	586.8125	2	585.814919	1169.61528	-0.035319	-2.069E-05	1.7611	0.0010317	1.7258	0.001011	585.8160863812492	96.518	0.40898	94.092	93.913	94.322	-2.4256					12	7	2	0	0	0	0.02706	1	8513	8513		23.523	3.5259	1	23575	+		45504	28641	37674	37697	48977	48977					0.037261297608893074
QIQRNTNIPS	10	Unmodified	_QIQRNTNIPS_					0	0	0			REV__MAP7D3|p.S512N|1|0.1|ENSG00000129680|chrX:136230845-136230845|C/T|missense_variant	REV__MAP7D3|p.S512N|1|0.1|ENSG00000129680|chrX:136230845-136230845|C/T|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	585.814919	1169.61528	-0.44683	-0.00026176	2.1327	0.0012494	1.6859	0.0009876	585.8159572665734	95.209	0.49403	94.181	93.972	94.466	-1.0281	0.072827	0.00031609	NaN	17.468	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18087	+		45505	28641	37674	37697							0.037261297608893074
QIQRNTNIPS	10	Unmodified	_QIQRNTNIPS_					0	0	0			REV__MAP7D3|p.S512N|1|0.1|ENSG00000129680|chrX:136230845-136230845|C/T|missense_variant	REV__MAP7D3|p.S512N|1|0.1|ENSG00000129680|chrX:136230845-136230845|C/T|missense_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	585.814919	1169.61528	-2.1859	-0.0012805	1.9824	0.0011613	-0.20352	-0.00011923	585.8167388158241	95.879	0.64143	94.051	93.83	94.471	-1.8286	-0.057323	0.00014001	NaN	17.468	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24171	+		45506	28641	37674	37697							0.037261297608893074
QIQRVRPRA	9	Unmodified	_QIQRVRPRA_					0	0	0		ENST00000600806.5_1_19:8551924-8553638:+|nuORF	ENST00000600806.5_1_19:8551924-8553638:+|nuORF	ENST00000600806.5_1_19:8551924-8553638:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3441162109375	2	562.343981	1122.67341	1.2434	0.00069921	-2.2131	-0.0012445	-0.96974	-0.00054533	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.61208	1	13984	13984		30.504	6.9809	1	683710			45507	14219	37675	37698	48978	48978					0.11697856196838075
QIQTQFAFT	9	Unmodified	_QIQTQFAFT_					0	0	0			REV__ENSG00000154358|ENST00000680850|OBSCN	REV__ENSG00000154358|ENST00000680850|OBSCN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.3563232421875	2	542.277106	1082.53966	-0.949	-0.00051462	-3.3438	-0.0018132	-4.2928	-0.0023279	542.2754622729641	46.819	0.771	43.746	43.501	44.272	-3.0724					23	14	2	0	0	0	0.027462	1	2476	2476		27.882	10.517	1	83425	+		45508	20380	37676	37699	48979	48979					0.0016915258061089844
QIQTQFAFT	9	Unmodified	_QIQTQFAFT_					0	0	0			REV__ENSG00000154358|ENST00000680850|OBSCN	REV__ENSG00000154358|ENST00000680850|OBSCN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.277106	1082.53966	-0.96637	-0.00052404	-4.8088	-0.0026077	-5.7751	-0.0031317	542.2751074018076	46.51	0.44647	43.8	43.596	44.043	-2.7097	0.02681	-0.0012287	NaN	27.882	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29898	+		45509	20380	37676	37699							0.0016915258061089844
QIQVQVQI	8	Unmodified	_QIQVQVQI_					0	0	0			REV__ENSG00000198218|ENST00000395443|QRICH1	REV__ENSG00000198218|ENST00000395443|QRICH1	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.3003845214844	2	478.282192	954.549831	0.49636	0.0002374	-1.0338	-0.00049445	-0.53744	-0.00025705	478.2816199840183	87.019	1.5363	85.588	84.751	86.288	-1.4311					88	29	4	0	0	0	0.028476	1	7561	7561		60.294	0	1	171030	+		45510	23003	37677	37700	48980	48980					0.07073760305854648
QIRAVLGAVP	10	Unmodified	_QIRAVLGAVP_					0	0	0		ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.2677612304688	2	512.319109	1022.62366	2.1621	0.0011077	-1.0162	-0.00052062	1.1459	0.00058706	512.3181923449624	82.405	0.88628	82.405	81.979	82.865	0					46	20	3	0	0	0	0.027021	1	8566	8566		29.15	0	1	2956200			45511	2674	37678	37701	48981	48981					0.11325728468170837
QIRFITAL	8	Unmodified	_QIRFITAL_					0	0	0		tr|A0A553SSU3|A0A553SSU3_NIACIGHKLdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03710PE=4SV=1	tr|A0A553SSU3|A0A553SSU3_NIACIGHKLdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03710PE=4SV=1	tr|A0A553SSU3|A0A553SSU3_NIACIGHKLdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03710PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.79803466796875	2	481.295102	960.575651	0.081323	3.9141E-05	-0.9198	-0.00044269	-0.83847	-0.00040355	481.29438684472115	115.94	0.59396	114.57	114.35	114.94	-1.3645					29	11	3	0	0	0	0.028476	1	10844	10844		37.159	3.6435	1	82106			45512	34420	37679	37702	48982	48982					0.09378654548117993
QIRGKKKE	8	Unmodified	_QIRGKKKE_					0	0	0		nc|ENSG00000017427|P05019|IGF1	nc|ENSG00000017427|P05019|IGF1	nc|ENSG00000017427|P05019|IGF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.8109436035156	2	493.808908	985.603263	0.72189	0.00035648	-1.0814	-0.00053399	-0.35948	-0.00017751	493.8082033689365	31.126	0.76694	28.595	28.34	29.107	-2.5308					53	29	3	0	0	0	0.75426	1	691	691		18.324	1.8513	1	34842			45513	14866	37680	37703	48983	48983					0.10988557808366295
QIRGPMLK	8	Unmodified	_QIRGPMLK_					0	0	0			REV__nc|ENSG00000163694|A0AV96-2|RBM47	REV__nc|ENSG00000163694|A0AV96-2|RBM47	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.25579833984375	2	471.781305	941.548056	0.45096	0.00021276	-3.1544	-0.0014882	-2.7034	-0.0012754	471.7799541755053	46.092	0.13301	46.092	45.979	46.112	0					4	2	2	0	0	0	0.028476	1	3232	3232		31.955	8.9181	1	237480	+		45514	20874	37681	37704	48984	48984					0.07494428016241272
QIRHMMDL	8	Unmodified	_QIRHMMDL_					0	0	0		ENSG00000121621|ENST00000263181|KIF18A	ENSG00000121621|ENST00000263181|KIF18A	ENSG00000121621|ENST00000263181|KIF18A	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.28125	2	522.259879	1042.50521	-0.92128	-0.00048115	-3.8078	-0.0019887	-4.7291	-0.0024698	522.7579097697368	53.237	0.26192	53.237	53.043	53.305	0					8	5	2	0	0	0	0.028476	1	4211	4211		33.516	0	1	111890			45515	3491	37682	37705	48985	48985					-0.014347101034900334
QIRKIVDQI	9	Unmodified	_QIRKIVDQI_					0	0	0		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000477112.1_1_22:38890609-38891019:-|nuORF;ENST00000497196.5_1_22:38889517-38891019:-|nuORF;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5;nc|ENSG00000108654|P17844-2|DDX5;ENST00000583894.1_1_17:62499293-62499524:-|nuORF;ENST00000581551.1_1_17:62499042-62499524:-|nuORF	nc|ENSG00000100201|Q92841-1|DDX17;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant;ENST00000583894.1_1_17:62499293-62499524:-|nuORF	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	556.84375	2	556.842948	1111.67134	-0.92547	-0.00051534	-1.3117	-0.00073041	-2.2372	-0.0012458	556.8429307848965	63.938	1.3089	63.938	63.607	64.916	0					79	31	5	0	0	0	0.074342	1	5776	5776		104.75	8.9314	1	7605900			45516	2023;721;13998	37683	37706	48986	48986					0.11997382668369028
QIRKLNPA	8	Unmodified	_QIRKLNPA_					0	0	0		ENSG00000006007|ENST00000353258|GDE1	ENSG00000006007|ENST00000353258|GDE1	ENSG00000006007|ENST00000353258|GDE1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.2676696777344	2	470.290351	938.566149	-0.53734	-0.0002527	0.73165	0.00034409	0.19432	9.1385E-05	470.2903149800578	44.1	0.60386	41.092	40.891	41.495	-3.0074					16	11	2	0	0	0	0.028476	1	2153	2153		25.45	2.4077	1	23378			45517	867	37684	37707	48987	48987					0.09440886262598269
QIRLPLPLP	9	Unmodified	_QIRLPLPLP_					0	0	0			REV__ENSG00000197147|ENST00000330947|LRRC8B	REV__ENSG00000197147|ENST00000330947|LRRC8B	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2822875976562	2	523.839677	1045.6648	-0.85016	-0.00044535	-1.4536	-0.00076147	-2.3038	-0.0012068	523.8383854441597	44.619	0.17754	44.619	44.528	44.706	0					5	3	2	0	0	0	0.027462	1	3023	3023		23.042	0	1	25109	+		45518	22897	37685	37708	48988	48988					0.14379489507655308
QIRMYEAR	8	Unmodified	_QIRMYEAR_					0	0	0			REV__ENSG00000277363|ENST00000617146|SRCIN1	REV__ENSG00000277363|ENST00000617146|SRCIN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.7996826171875	2	533.776751	1065.53895	-0.91462	-0.0004882	-2.7773	-0.0014825	-3.6919	-0.0019707	533.7752176189425	66.81	0.68912	63.32	63	63.689	-3.4902					24	13	2	0	0	0	0.028476	1	4839	4839		30.504	2.2494	1	55997	+		45519	23631	37686	37709	48989	48989					0.008800346599173281
QIRQIISR	8	Unmodified	_QIRQIISR_					0	0	0			REV__nc|ENSG00000103274|P53384-2|NUBP1	REV__nc|ENSG00000103274|P53384-2|NUBP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.3209533691406	2	507.314358	1012.61416	2.2646	0.0011489	2.5258	0.0012814	4.7905	0.0024303	507.3155145863948	108.34	0.64549	108.34	108.07	108.71	0					34	14	4	0	0	0	0.028476	1	12284	12284		23.042	0	1	850960	+		45520	17610	37687	37710	48990	48990					0.108359601826578
QIRQLMPDI	9	Unmodified	_QIRQLMPDI_					0	0	0		ENST00000266659.7_2_12:75893342-75893732:+|nuORF	ENST00000266659.7_2_12:75893342-75893732:+|nuORF	ENST00000266659.7_2_12:75893342-75893732:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.7467041015625	2	557.307884	1112.60121	3.1565	0.0017591	-3.9172	-0.0021831	-0.76067	-0.00042393	557.3054093262099	97.846	0.5931	97.846	97.654	98.247	0					19	13	2	0	0	0	0.027441	1	10778	10778		25.574	4.6271	1	480790			45521	9960	37688	37711	48991	48991					0.04941761008240064
QIRQPLIE	8	Unmodified	_QIRQPLIE_					0	0	0			REV__ENST00000590234.5_1_18:47810059-47811374:-|nuORF	REV__ENST00000590234.5_1_18:47810059-47811374:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.7520446777344	2	498.795466	995.57638	-1.0541	-0.00052576	-0.021703	-1.0825E-05	-1.0758	-0.00053659	498.7952800005487	96.358	1.6226	94.529	94.221	95.844	-1.8286					50	31	2	0	0	0	0.028476	1	6476	6476		40.573	8.6178	1	245580	+		45522	20401	37689	37712	48992	48992					0.07841449197178463
QIRREQYIPN	10	Unmodified	_QIRREQYIPN_					0	0	0		ENSG00000171428|ENST00000307719|NAT1	ENSG00000171428|ENST00000307719|NAT1	ENSG00000171428|ENST00000307719|NAT1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	440.2754211425781	3	439.573837	1315.69968	-0.24766	-0.00010887	2.096	0.00092133	1.8483	0.00081246	439.5750897903039	68.876	1.2244	65.386	65.064	66.288	-3.4902					59	24	3	0	0	0	0.027117	1	5212	5212		28.081	6.3957	1	87952			45523	7194	37690	37713	48993	48993					0.054460805776670895
QIRREQYIPN	10	Unmodified	_QIRREQYIPN_					0	0	0		ENSG00000171428|ENST00000307719|NAT1	ENSG00000171428|ENST00000307719|NAT1	ENSG00000171428|ENST00000307719|NAT1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	439.573837	1315.69968	-0.0069792	-3.0679E-06	2.7772	0.0012208	2.7703	0.0012177	439.57507055398025	67.728	1.3835	65.067	64.743	66.127	-2.661	-0.15499	0.00051893	NaN	28.081	62	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92250			45524	7194	37690	37713							0.054460805776670895
QIRREQYIPN	10	Unmodified	_QIRREQYIPN_					0	0	0		ENSG00000171428|ENST00000307719|NAT1	ENSG00000171428|ENST00000307719|NAT1	ENSG00000171428|ENST00000307719|NAT1	MULTI-MATCH	OvCa9_classI_Rep3	3		3	439.573837	1315.69968	1.1306	0.00049699	0.0018878	8.2983E-07	1.1325	0.00049782	439.57455972231827	68.1	1.699	65.212	64.889	66.588	-2.8873	-0.009278	-0.003141	NaN	28.081	75	33	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38705			45525	7194	37690	37713							0.054460805776670895
QIRRLNLQ	8	Unmodified	_QIRRLNLQ_					0	0	0		ENSG00000132793|ENST00000373257|LPIN3;nc|ENSG00000132793|Q9BQK8-2|LPIN3	ENSG00000132793|ENST00000373257|LPIN3	ENSG00000132793|ENST00000373257|LPIN3	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.3330688476562	2	520.819807	1039.62506	1.7898	0.00093217	0.71909	0.00037452	2.5089	0.0013067	520.8212666200639	108.24	0.47139	108.24	108.07	108.54	0					16	10	2	0	0	0	0.028476	1	12246	12246		31.955	2.7848	1	189970			45526	4174	37691	37714	48994	48994					0.10683362556937936
QIRRSHYRRKW	11	Unmodified	_QIRRSHYRRKW_					0	0	0			REV__ENSG00000074356|ENST00000389005|NCBP3	REV__ENSG00000074356|ENST00000389005|NCBP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.3004150390625	3	529.302675	1584.8862	1.3228	0.00070015	2.2454	0.0011885	3.5681	0.0018886	529.6379602924446	109.28	0.7027	109.28	108.85	109.55	0					22	15	2	0	0	0	0.026401	1	12348	12348		8.4073	3.7639	1	110830	+		45527	16949	37692	37715	48995	48995					0.11714742256663158
QIRVGVDLDEN	11	Unmodified	_QIRVGVDLDEN_					0	0	0		ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	MULTI-SECPEP	OvCa99_classI_Rep5	1	628.406494140625	2	629.325316	1256.63608	2.6767	0.0016845	1.7166	0.0010803	4.3933	0.0027648	629.3266562339068	121.13	0.7835	121.13	120.78	121.57	0					47	17	4	0	0	0	0.025656	1	13907	13907		32.751	3.5805	1	154860			45528	7957	37693	37716	48996	48996					0.01802675349904348
QIRVGVDLDEN	11	Unmodified	_QIRVGVDLDEN_					0	0	0		ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	MULTI-MATCH	OvCa9_classI_Rep2	2		2	629.325316	1256.63608	-1.5832	-0.00099634	4.7136	0.0029664	3.1304	0.00197	629.3280614568515	121.11	0.93931	120.92	120.7	121.64	-0.19718	0.023007	0.0028057	NaN	32.751	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49799			45529	7957	37693	37716							0.01802675349904348
QIRVGVDLDEN	11	Unmodified	_QIRVGVDLDEN_					0	0	0		ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	MULTI-MATCH	OvCa9_classI_Rep3	3		2	629.325316	1256.63608	1.8153	0.0011424	1.3896	0.00087449	3.2049	0.0020169	629.3260532330904	121.79	1.1	120.76	120.38	121.48	-1.0286	-0.12999	-0.0013781	NaN	32.751	40	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78530			45530	7957	37693	37716							0.01802675349904348
QIRVGVDLDEN	11	Unmodified	_QIRVGVDLDEN_					0	0	0		ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	ENSG00000181804|ENST00000316549|SLC9A9	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	629.325316	1256.63608	0.17538	0.00011037	3.1862	0.0020052	3.3616	0.0021155	629.3270843748822	122.12	1.2076	120.77	120.51	121.71	-1.357	-0.12708	0.00088323	NaN	32.751	42	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66666			45531	7957	37693	37716							0.01802675349904348
QIRWLEKQI	9	Unmodified	_QIRWLEKQI_					0	0	0			REV__ENSG00000052126|ENST00000429027|PLEKHA5	REV__ENSG00000052126|ENST00000429027|PLEKHA5	MULTI-MSMS	OvCa9_classI_Rep2	2	405.2385559082031	3	405.239907	1212.69789	1.178	0.00047739	-4.4282	-0.0017945	-3.2502	-0.0013171	405.2380980368008	45.582	1.7446	42.872	42.448	44.192	-2.7097					104	34	5	0	0	0	0.37135	1	2674	2674		54.776	0	1	1021000	+		45532	16690	37694	37717	48997	48997					0.10005071559703538
QISAMMNRQL	10	Unmodified	_QISAMMNRQL_					0	0	0			REV__nc|ENSG00000157637|Q9HBR0-3|SLC38A10	REV__nc|ENSG00000157637|Q9HBR0-3|SLC38A10	MULTI-MSMS	OvCa99_classI_Rep5	1	596.302734375	2	596.302275	1190.59	-0.2564	-0.00015289	0.16318	9.7306E-05	-0.093219	-5.5587E-05	596.3022519528424	39.008	0.44912	39.008	38.793	39.242	0					22	9	3	0	0	0	0.37436	1	2264	2264		71.877	0	1	252990	+		45533	20527	37695	37718	48998	48998					0.0023261564244876354
QISDLGILL	9	Unmodified	_QISDLGILL_					0	0	0		nc|ENSG00000162852|Q6PJW8-2|CNST;ENSG00000162852|ENST00000366513|CNST	nc|ENSG00000162852|Q6PJW8-2|CNST	nc|ENSG00000162852|Q6PJW8-2|CNST	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.29132080078125	2	486.292225	970.569897	3.3464	0.0016273	-3.7995	-0.0018477	-0.45304	-0.00022031	486.29031472683596	133.8	3.4888	132.27	131.95	135.44	-1.5257					167	70	3	0	0	0	0.38529	1	13022	13022		53.351	0	1	1397500			45534	6241	37696	37719	48999	48999					0.08343511245811897
QISGKEKSFQ	10	Unmodified	_QISGKEKSFQ_					0	0	0			REV__nc|ENSG00000118690|Q8NEN0-2|ARMC2	REV__nc|ENSG00000118690|Q8NEN0-2|ARMC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.3250732421875	2	576.306395	1150.59824	0.075717	4.3636E-05	1.92	0.0011065	1.9957	0.0011502	576.3080337934261	63.425	0.95057	63.425	63.1	64.051	0					67	23	6	0	0	0	0.02706	1	5791	5791		23.523	9.3856	1	792530	+		45535	18411	37697	37720	49000	49000					0.02896209155096585
QISILHLVIK	10	Unmodified	_QISILHLVIK_					0	0	0		ENST00000603672.5_2_X:73501546-73501636:-|nuORF	ENST00000603672.5_2_X:73501546-73501636:-|nuORF	ENST00000603672.5_2_X:73501546-73501636:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.851806640625	2	582.379166	1162.74378	-0.78553	-0.00045748	-2.6179	-0.0015246	-3.4035	-0.0019821	582.3774788115322	49.141	0.47646	49.141	48.986	49.462	0					17	10	2	0	0	0	0.026968	1	3653	3653		29.17	16.963	1	214460			45536	14256	37698	37721	49001	49001					0.16891716741906748
QISILVQL	8	Unmodified	_QISILVQL_					0	0	0			REV__UBE2O|p.E1121Rfs*4|1|0.12|ENSG00000175931|chr17:76391461-76391462|-/G|frameshift_variant	REV__UBE2O|p.E1121Rfs*4|1|0.12|ENSG00000175931|chr17:76391461-76391462|-/G|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	457.29150390625	2	457.289485	912.564418	1.0679	0.00048834	0.77666	0.00035516	1.8446	0.0008435	457.2897728071451	157.12	1.7086	157.12	156.85	158.56	0					94	34	5	0	0	0	0.50747	1	18473	18473		76.774	2.7994	1	2196300	+		45537	21924	37699	37722	49002	49002					0.10463832454001931
QISKLTLPE	9	Unmodified	_QISKLTLPE_					0	0	0			REV__nc|ENSG00000163673|Q9C098|DCLK3	REV__nc|ENSG00000163673|Q9C098|DCLK3	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.8513793945312	2	514.802957	1027.59136	2.6716	0.0013753	-0.87105	-0.00044842	1.8005	0.00092692	514.8023822046591	89.455	0.20565	89.455	89.394	89.6	0					6	4	2	0	0	0	0.027446	1	9570	9570		42.864	12.547	1	93392	+		45538	20869	37700	37723	49003	49003					0.07866896274504143
QISKSRQEL	9	Unmodified	_QISKSRQEL_					0	0	0		DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.F3496Wfs*92|1|0.14|ENSG00000197102|chr14:102034043-102034044|-/GACCTGGCAGCTGTCGAGGC|frameshift_variant;DYNC1H1|p.P2596Tfs*19|1|0.06|ENSG00000197102|chr14:102016936-102016937|-/A|frameshift_variant;DYNC1H1|p.E1316*|1|0.12|ENSG00000197102|chr14:102000128-102000129|-/C|frameshift_variant;DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	544.8064575195312	2	544.806562	1087.59857	-0.34732	-0.00018922	3.2478	0.0017694	2.9005	0.0015802	544.807894746868	78.293	2.6731	76.553	75.205	77.878	-1.7398					144	51	4	0	0	0	0.13326	1	6516	6516		88.177	5.4265	1	701020			45539	767;768	37701	37724	49004	49004					0.05827628874953916
QISKSRQEL	9	Unmodified	_QISKSRQEL_					0	0	0		DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.F3496Wfs*92|1|0.14|ENSG00000197102|chr14:102034043-102034044|-/GACCTGGCAGCTGTCGAGGC|frameshift_variant;DYNC1H1|p.P2596Tfs*19|1|0.06|ENSG00000197102|chr14:102016936-102016937|-/A|frameshift_variant;DYNC1H1|p.E1316*|1|0.12|ENSG00000197102|chr14:102000128-102000129|-/C|frameshift_variant;DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.808349609375	2	544.806562	1087.59857	-0.64926	-0.00035372	2.4423	0.0013306	1.793	0.00097686	544.8076339848565	79.133	2.3917	76.382	75.426	77.817	-2.7514					108	49	3	0	0	0	0.075543	1	6428	6428		104.06	0	1	2689700			45540	767;768	37701	37724	49005	49005					0.05827628874953916
QISLLVRR	8	Unmodified	_QISLLVRR_					0	0	0		ENST00000457076.5_1_2:70278401-70314348:-|nuORF	ENST00000457076.5_1_2:70278401-70314348:-|nuORF	ENST00000457076.5_1_2:70278401-70314348:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	492.81866455078125	2	492.819276	983.623999	-1.0524	-0.00051866	0.60887	0.00030006	-0.44358	-0.0002186	492.81937696825383	61.985	2.6287	59.225	58.882	61.511	-2.7593					139	50	4	0	0	0	0.66057	1	4661	4661		51.335	3.6781	1	798600			45541	12118	37702	37725	49006	49006					0.13153148188030173
QISLRPLDL	9	Unmodified	_QISLRPLDL_					0	0	0			REV__nc|ENSG00000128052|P35968-2|KDR	REV__nc|ENSG00000128052|P35968-2|KDR	MULTI-MSMS	OvCa99_classI_Rep5	1	527.8182983398438	2	527.816399	1053.61824	2.4618	0.0012994	-0.56644	-0.00029898	1.8953	0.0010004	527.8159774537054	100.73	1.125	100.73	100.15	101.27	0					58	26	3	0	0	0	0.22621	1	11194	11194		71.877	5.4482	1	2903000	+		45542	18839	37703	37726	49007	49007					0.09358004885712035
QITAGKHG	8	Unmodified	_QITAGKHG_					0	0	0		CON__Q6IFZ6	CON__Q6IFZ6	CON__Q6IFZ6	MULTI-MSMS	OvCa99_classI_Rep5	1	406.2251281738281	2	406.224677	810.434801	1.7	0.00069057	-1.2027	-0.00048856	0.49729	0.00020201	406.22395327300046	45.442	0.55438	45.442	45.245	45.8	0					34	12	4	0	0	0	0.72896	1	3138	3138		37.159	1.9584	1	1519700		+	45543	654	37704	37727	49008	49008					0.022000758947001486
QITCKQEEI	9	Unmodified	_QITCKQEEI_					0	0	0			REV__nc|ENSG00000103995|O94986-1|CEP152	REV__nc|ENSG00000103995|O94986-1|CEP152	MULTI-MSMS	OvCa99_classI_Rep5	1	546.2783203125	2	546.273706	1090.53286	1.3275	0.00072519	3.4446	0.0018817	4.7722	0.0026069	546.2758765498381	119.13	0.74661	119.13	118.72	119.47	0					29	15	2	0	0	0	0.33652	1	13663	13663		58.782	0	1	465950	+		45544	17639	37705	37728	49009	49009					-0.008785283622728457
QITCKQEEI	9	Unmodified	_QITCKQEEI_					0	0	0			REV__nc|ENSG00000103995|O94986-1|CEP152	REV__nc|ENSG00000103995|O94986-1|CEP152	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	546.273706	1090.53286	1.3275	0.00072519	3.4446	0.0018817	4.7722	0.0026069	546.2758765498381	119.13	0.74661	119.13	118.72	119.47	0	0	0	NaN	58.782	29	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	465950	+		45545	17639	37705	37728							-0.008785283622728457
QITELVAKAIR	11	Unmodified	_QITELVAKAIR_					0	0	0			REV__tr|A0A553SH18|A0A553SH18_NIACIGlycosyltransferasefamily4proteinOS=NialliacirculansOX=1397GN=CEQ21_11945PE=4SV=1	REV__tr|A0A553SH18|A0A553SH18_NIACIGlycosyltransferasefamily4proteinOS=NialliacirculansOX=1397GN=CEQ21_11945PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	414.59112548828125	3	414.590717	1240.75032	-0.3176	-0.00013168	1.5338	0.00063588	1.2162	0.00050421	414.59131292590723	33.401	1.2917	30.691	30.42	31.712	-2.7097					57	25	3	0	0	0	0.72458	1	1207	1207		21.032	0.71722	1	132160	+		45546	29765	37706	37729	49010	49010					0.13957609902649892
QITERIYIL	9	Unmodified	_QITERIYIL_					0	0	0		ENST00000377861.4_3_13:67783303-67783480:-|nuORF	ENST00000377861.4_3_13:67783303-67783480:-|nuORF	ENST00000377861.4_3_13:67783303-67783480:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	574.8361206054688	2	574.837331	1147.66011	0.90554	0.00052054	-1.424	-0.00081856	-0.51844	-0.00029802	574.8365086671698	89.906	5.8582	88.604	88.285	94.143	-1.302					235	114	5	0	0	0	0.40818	1	7941	7941		51.193	4.7359	1	3839600			45547	11094	37707	37730	49011	49011					0.09218560574208823
QITERIYIL	9	Unmodified	_QITERIYIL_					0	0	0		ENST00000377861.4_3_13:67783303-67783480:-|nuORF	ENST00000377861.4_3_13:67783303-67783480:-|nuORF	ENST00000377861.4_3_13:67783303-67783480:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	574.8386840820312	2	574.837331	1147.66011	-1.4106	-0.00081085	0.80962	0.0004654	-0.60095	-0.00034545	574.8376960382861	90.862	4.6623	88.781	88.464	93.126	-2.0805					220	93	6	0	0	0	0.49652	1	5700	5700		42.864	2.8061	1	4849000			45548	11094	37707	37730	49012	49012					0.09218560574208823
QITKCLRIL	9	Unmodified	_QITKCLRIL_					0	0	0			REV__ENST00000566475.1_1_6:31022164-31027375:+|nuORF	REV__ENST00000566475.1_1_6:31022164-31027375:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.7930908203125	2	544.336444	1086.65834	1.9574	0.0010655	-3.0598	-0.0016656	-1.1024	-0.00060008	544.3346681229331	85.533	0.66302	85.533	85.087	85.75	0					28	15	3	0	0	0	0.027462	1	9008	9008		20.947	0	1	668640	+		45549	27702	37708	37731	49013	49013					0.11847228284614175
QITKVIVLAE	10	Unmodified	_QITKVIVLAE_					0	0	0		ENST00000604297.1_1_X:46421090-46422044:-|nuORF	ENST00000604297.1_1_X:46421090-46422044:-|nuORF	ENST00000604297.1_1_X:46421090-46422044:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	557.3307495117188	2	557.347532	1112.68051	-1.0161	-0.00056629	-0.13706	-7.6389E-05	-1.1531	-0.00064268	557.3475004819002	81.568	0.45206	79.246	79.156	79.608	-2.3226					15	8	2	0	0	0	0.026931	1	4551	4551		17.468	0.75062	1	21706			45550	14264	37709	37732	49014	49014					0.1286773123401872
QITLIIENI	9	Unmodified	_QITLIIENI_					0	0	0			REV__tr|A0A553SU77|A0A553SU77_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_06495PE=3SV=1	REV__tr|A0A553SU77|A0A553SU77_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_06495PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	528.8185424804688	2	528.818607	1055.62266	-0.60363	-0.00031921	-0.40243	-0.00021281	-1.0061	-0.00053202	528.8183619867048	115.41	2.6689	114.37	113.91	116.58	-1.0414					129	51	6	0	0	0	0.066102	1	8591	8591		109.48	10.849	1	629220	+		45551	31048	37710	37733	49015	49015					0.09707469308614236
QITLMDIPV	9	Unmodified	_QITLMDIPV_					0	0	0		ENST00000472427.5_1_9:129677191-129778941:+|nuORF;ENST00000373439.6_1_9:129677191-129831664:+|nuORF;nc|ENSG00000136828|Q5JS13-6|RALGPS1;nc|ENSG00000136828|Q5JS13-5|RALGPS1;nc|ENSG00000136828|Q5JS13-4|RALGPS1;nc|ENSG00000136828|Q5JS13-3|RALGPS1;nc|ENSG00000136828|Q5JS13-2|RALGPS1;nc|ENSG00000136828|Q5JS13-7|RALGPS1;ENSG00000136828|ENST00000259351|RALGPS1;RALGPS1-GAPVD1|1|fusion	ENST00000472427.5_1_9:129677191-129778941:+|nuORF;RALGPS1-GAPVD1|1|fusion	RALGPS1-GAPVD1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	515.286865234375	2	515.286085	1028.55762	1.6626	0.00085671	1.8984	0.00097824	3.561	0.001835	515.2869087347317	28.904	0.97584	26.195	25.999	26.975	-2.7097					44	20	3	0	0	0	0.69403	1	672	672		19.997	0.89325	1	79121			45552	11009;15540	37711	37734	49016	49016					0.04448151511087417
QITPGSSQIP	10	Unmodified	_QITPGSSQIP_					0	0	0			REV__ENST00000332869.5_1_10:60475343-60475418:+|nuORF	REV__ENST00000332869.5_1_10:60475343-60475418:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	514.8026733398438	2	514.274564	1026.53457	-0.010102	-5.1952E-06	-1.834	-0.00094318	-1.8441	-0.00094837	514.2739538226116	93.567	1.0928	92.399	92.003	93.096	-1.168					38	20	3	0	0	0	0.026734	1	8423	8423		31.53	1.0262	1	31588	+		45553	23401	37712	37735	49017	49017					0.022368487180074226
QITQVNQRV	9	Unmodified	_QITQVNQRV_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MSMS	OvCa99_classI_Rep5	1	543.3088989257812	2	543.306729	1084.59891	-0.47106	-0.00025593	-0.067914	-3.6898E-05	-0.53897	-0.00029283	543.3065513143897	51.664	0.79585	51.664	51.418	52.214	0					47	18	3	0	0	0	0.053172	1	3996	3996		116.9	42.649	1	3300200			45554	6130	37713	37736	49018	49018					0.059990485947992056
QITRIIVGVG	10	Unmodified	_QITRIIVGVG_					0	0	0		tr|A0A7D6VQM6|A0A7D6VQM6_9CLOTPolysaccharidebiosynthesisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21740PE=4SV=1	tr|A0A7D6VQM6|A0A7D6VQM6_9CLOTPolysaccharidebiosynthesisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21740PE=4SV=1	tr|A0A7D6VQM6|A0A7D6VQM6_9CLOTPolysaccharidebiosynthesisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21740PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3171997070312	2	528.332216	1054.64988	0.5799	0.00030638	-1.3743	-0.00072608	-0.79439	-0.0004197	528.3316846530117	66.879	0.23724	66.879	66.739	66.977	0					8	5	2	0	0	0	0.027118	1	6227	6227		13.454	0	1	158210			45555	34859	37714	37737	49019	49019					0.12473997639676782
QITRVLLE	8	Unmodified	_QITRVLLE_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-SECPEP	OvCa9_classI_Rep3	3	487.2822570800781	2	486.297842	970.581131	-0.87791	-0.00042693	0.067785	3.2964E-05	-0.81013	-0.00039396	486.29796046732577	98.02	1.334	96.261	95.913	97.247	-1.7595					66	25	4	0	0	0	0.028476	1	6552	6552		68.787	0	1	222820			45556	3691	37715	37738	49020	49020					0.09466333339946686
QIVENWQG	8	Unmodified	_QIVENWQG_					0	0	0		ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	ENSG00000129933|ENST00000262815|MAU2	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.3155212402344	2	487.240524	972.466495	-1.052	-0.00051257	4.1463	0.0020202	3.0943	0.0015077	487.2424743124318	51.056	0.84287	48.262	47.975	48.818	-2.794					27	16	2	0	0	0	0.028476	1	3300	3300		35.201	16.876	1	43305			45557	3948	37716	37739	49021	49021					-0.020839761420006653
QIVISMETV	9	Unmodified	_QIVISMETV_					0	0	0		ENSG00000132549|ENST00000357162|VPS13B;nc|ENSG00000132549|Q7Z7G8-6|VPS13B;nc|ENSG00000132549|Q7Z7G8|VPS13B;VPS13B-CPQ|2|fusion;VPS13B-CPQ|1|fusion	ENSG00000132549|ENST00000357162|VPS13B	ENSG00000132549|ENST00000357162|VPS13B	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.8017272949219	2	510.275718	1018.53688	-0.71844	-0.0003666	-1.824	-0.00093074	-2.5424	-0.0012973	510.27412973176155	76.382	0.78625	74.528	74.044	74.83	-1.854					25	14	3	0	0	0	0.027462	1	6295	6295		35.618	0	1	45626			45558	4146	37717	37740	49022	49022					0.0283556113143959
QIVKGDELVI	10	Unmodified	_QIVKGDELVI_					0	0	0			REV__tr|A0A553SUD8|A0A553SUD8_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06810PE=4SV=1	REV__tr|A0A553SUD8|A0A553SUD8_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06810PE=4SV=1	MSMS	OvCa9_classI_Rep2	2	557.3292236328125	2	557.329339	1112.64412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.131	1	79.483	78.983	79.983	-1.6485								0	0	0	0.15338	1	6877	6877		42.864	0	1		+		45559	31066	37718	37741	49023	49023					0.0923085433732922
QIVMYKLL	8	Unmodified	_QIVMYKLL_					0	0	0			REV__ENSG00000188559|ENST00000202677|RALGAPA2	REV__ENSG00000188559|ENST00000202677|RALGAPA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.82513427734375	2	504.301539	1006.58852	0.15037	7.5829E-05	2.4593	0.0012402	2.6096	0.001316	504.3023674635464	73.737	0.54106	73.737	73.479	74.02	0					24	13	3	0	0	0	0.028476	1	7280	7280		24.203	20.518	1	351240	+		45560	22718	37719	37742	49024	49024					0.08549349616021118
QIVSQRKLS	9	Unmodified	_QIVSQRKLS_					0	0	0		CPNE4|p.K512Nfs*44|1|0.06|ENSG00000196353|chr3:131542560-131542560|T/-|frameshift_variant;ENSG00000196353|ENST00000429747|CPNE4;chr3:132284170-132285240|150|12.41|0.32|5.28|-|ENST00000512055|CPNE4,CPNE4;nc|ENSG00000196353|Q96A23-2|CPNE4	CPNE4|p.K512Nfs*44|1|0.06|ENSG00000196353|chr3:131542560-131542560|T/-|frameshift_variant	CPNE4|p.K512Nfs*44|1|0.06|ENSG00000196353|chr3:131542560-131542560|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	529.8209228515625	2	529.819473	1057.62439	-0.23715	-0.00012564	-0.19996	-0.00010594	-0.43711	-0.00023159	529.8191944122269	60.372	0.9919	60.372	60.079	61.071	0					51	23	3	0	0	0	0.50149	1	5260	5260		42.396	0	1	6535900			45561	473	37720	37743	49025	49025					0.09788523117231307
QIVSQRKLS	9	Unmodified	_QIVSQRKLS_					0	0	0		CPNE4|p.K512Nfs*44|1|0.06|ENSG00000196353|chr3:131542560-131542560|T/-|frameshift_variant;ENSG00000196353|ENST00000429747|CPNE4;chr3:132284170-132285240|150|12.41|0.32|5.28|-|ENST00000512055|CPNE4,CPNE4;nc|ENSG00000196353|Q96A23-2|CPNE4	CPNE4|p.K512Nfs*44|1|0.06|ENSG00000196353|chr3:131542560-131542560|T/-|frameshift_variant	CPNE4|p.K512Nfs*44|1|0.06|ENSG00000196353|chr3:131542560-131542560|T/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	529.819473	1057.62439	-2.1556	-0.0011421	2.1823	0.0011562	0.026698	1.4145E-05	530.3236753871585	63.444	0.46875	60.699	60.374	60.842	-2.7444	0.16372	0.0023771	NaN	42.396	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13164			45562	473	37720	37743							0.09788523117231307
QIVTLMVAPE	10	Unmodified	_QIVTLMVAPE_					0	0	0		ENST00000574186.1_1_17:5389953-5390326:+|nuORF	ENST00000574186.1_1_17:5389953-5390326:+|nuORF	ENST00000574186.1_1_17:5389953-5390326:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	550.806884765625	2	550.804642	1099.59473	-0.54913	-0.00030246	3.7264	0.0020525	3.1772	0.00175	550.8065503475332	50.054	1.4381	47.26	46.884	48.322	-2.794					74	28	3	0	0	0	0.60504	1	3205	3205		41.427	3.6151	1	265350			45563	13928	37721	37744	49026	49026					0.04891823056868816
QIVYGNYESK	10	Unmodified	_QIVYGNYESK_					0	0	0		nc|ENSG00000001631|O00522-3|KRIT1;ENSG00000001631|ENST00000394505|KRIT1;nc|ENSG00000001631|O00522-2|KRIT1;ENST00000486261.5_1_7:91830052-91864980:-|nuORF;ENST00000475770.5_1_7:91830052-91864980:-|nuORF	nc|ENSG00000001631|O00522-3|KRIT1	nc|ENSG00000001631|O00522-3|KRIT1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	600.851806640625	2	600.798403	1199.58225	1.3382	0.00080401	-4.2938	-0.0025797	-2.9555	-0.0017757	600.7957119220584	84.546	0.55054	81.883	81.458	82.009	-2.6629					15	11	2	0	0	0	0.026956	1	7030	7030		9.1829	0	1	22938			45564	808	37722	37745	49027	49027					-0.009554970818271613
QIVYQQDW	8	Unmodified	_QIVYQQDW_					0	0	0			REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-SECPEP	OvCa9_classI_Rep3	3	539.79296875	2	540.261456	1078.50836	1.5178	0.00082003	-2.1516	-0.0011624	-0.63373	-0.00034238	540.2577516088245	128.25	0.54374	127.15	126.87	127.42	-1.0933					26	10	3	0	0	0	0.028476	1	10057	10057		21.96	0	1	17607	+		45565	28896	37723	37746	49028	49028					-0.027754204534858218
QIWDKILS	8	Unmodified	_QIWDKILS_					0	0	0		ENSG00000100867|ENST00000250383|DHRS2;nc|ENSG00000100867|Q13268-2|DHRS2	ENSG00000100867|ENST00000250383|DHRS2	ENSG00000100867|ENST00000250383|DHRS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.7728576660156	2	501.784567	1001.55458	0.091507	4.5917E-05	-4.0509	-0.0020327	-3.9594	-0.0019867	501.7826806319989	70.776	0.46527	70.776	70.565	71.031	0					24	11	3	0	0	0	0.028476	1	6840	6840		56.434	23.621	1	2961500			45566	2113	37724	37747	49029	49029					0.053866444486288856
QIWHTVVD	8	Unmodified	_QIWHTVVD_					0	0	0			REV__nc|ENSG00000011422|Q03405-2|PLAUR	REV__nc|ENSG00000011422|Q03405-2|PLAUR	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.2704772949219	2	499.258717	996.50288	2.726	0.001361	-1.4583	-0.00072807	1.2677	0.00063291	499.25787815771366	100.82	0.58625	100.82	100.65	101.23	0					15	13	2	0	0	0	0.028476	1	11232	11232		40.573	0	1	173290	+		45567	16490	37725	37748	49030	49030					0.004489007547022084
QIWIEPDP	8	Unmodified	_QIWIEPDP_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.3167419433594	2	499.2531	996.491647	1.9519	0.00097451	0.75812	0.0003785	2.7101	0.001353	499.2538284689096	110.85	0.31013	110.85	110.63	110.94	0					13	6	3	0	0	0	0.028476	1	12581	12581		44.117	0	1	77157	+		45568	19568	37726	37749	49031	49031					-0.006739213394325816
QIWKKLSI	8	Unmodified	_QIWKKLSI_					0	0	0			REV__ENST00000280979.8_2_14:33201753-33204873:+|nuORF	REV__ENST00000280979.8_2_14:33201753-33204873:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.7503967285156	2	508.318577	1014.6226	1.8601	0.00094554	0.54231	0.00027567	2.4024	0.0012212	508.3186307986206	87.606	0.53987	87.606	87.298	87.838	0					21	12	2	0	0	0	0.028476	1	9241	9241		29.15	0	1	419700	+		45569	24113	37727	37750	49032	49032					0.11587514099278451
QIYCFIWII	9	Unmodified	_QIYCFIWII_					0	0	0			REV__tr|A0A7D6VRS7|A0A7D6VRS7_9CLOTDUF3021domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03300PE=4SV=1	REV__tr|A0A7D6VRS7|A0A7D6VRS7_9CLOTDUF3021domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03300PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.8794250488281	3	400.215822	1197.62564	1.0793	0.00043196	-3.21	-0.0012847	-2.1307	-0.00085275	400.21426601311407	54.328	0.49907	54.328	54.048	54.547	0					15	11	2	0	0	0	0.027462	1	4358	4358		35.618	9.5549	1	196600	+		45570	31442	37728	37751	49033	49033					0.03473021161789802
QIYEQANWYYN	11	Unmodified	_QIYEQANWYYN_					0	0	0			REV__BRD4|p.C125Y|1|0.35|ENSG00000141867|chr19:15268954-15268954|C/T|missense_variant	REV__BRD4|p.C125Y|1|0.35|ENSG00000141867|chr19:15268954-15268954|C/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.7601318359375	3	497.889491	1490.64664	0.099714	4.9646E-05	-3.7663	-0.0018752	-3.6666	-0.0018256	498.22192463799274	79.687	0.46002	77.347	77.103	77.563	-2.3399					12	8	2	0	0	0	0.026344	1	4293	4293		14.086	8.3872	1	13834	+		45571	15711	37729	37752	49034	49034					-0.07905341995638082
QIYMETSLV	9	Unmodified	_QIYMETSLV_					0	0	0		ENSG00000146587|ENST00000396912|RBAK	ENSG00000146587|ENST00000396912|RBAK	ENSG00000146587|ENST00000396912|RBAK	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.6638793945312	2	542.273175	1082.5318	2.9492	0.0015993	-3.6284	-0.0019676	-0.67912	-0.00036827	542.2711837301003	89.701	0.36954	89.701	89.435	89.804	0					12	8	2	0	0	0	0.027426	1	9593	9593		31.53	5.9558	1	224250			45572	5300	37730	37753	49035	49035					-0.006167427311766005
QIYMETSLV	9	Unmodified	_QIYMETSLV_					0	0	0		ENSG00000146587|ENST00000396912|RBAK	ENSG00000146587|ENST00000396912|RBAK	ENSG00000146587|ENST00000396912|RBAK	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.273175	1082.5318	0.98983	0.00053676	1.0744	0.00058261	2.0642	0.0011194	542.2713400129078	90.726	0.19716	89.424	89.274	89.471	-1.302	-0.13887	0.0020441	NaN	31.53	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7882			45573	5300	37730	37753							-0.006167427311766005
QIYQKRWEPTI	11	Unmodified	_QIYQKRWEPTI_					0	0	0			REV__XPR1-AHNAK|1|fusion	REV__XPR1-AHNAK|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep3	3	488.2899169921875	3	487.933143	1460.7776	-1.1823	-0.00057689	-1.4844	-0.00072427	-2.6667	-0.0013012	488.26631691734326	96.919	0.97875	95.091	94.521	95.5	-1.8286					22	18	2	0	0	0	0.02625	1	6434	6434		18.531	7.0764	1	22108	+		45574	19831	37731	37754	49036	49036					0.06564093443034835
QIYQQLFKI	9	Unmodified	_QIYQQLFKI_					0	0	0		ENST00000431872.1_1_9:68357853-68358255:-|nuORF	ENST00000431872.1_1_9:68357853-68358255:-|nuORF	ENST00000431872.1_1_9:68357853-68358255:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	590.291748046875	2	590.839874	1179.66519	-1.0997	-0.00064977	1.5382	0.00090884	0.43849	0.00025908	590.8394751141559	69.95	0.16491	69.95	69.84	70.005	0					6	3	2	0	0	0	0.027462	1	6684	6684		38.806	10.924	1	84443			45575	11803	37732	37755	49037	49037					0.08254864436867138
QIYRKGLI	8	Unmodified	_QIYRKGLI_					0	0	0			REV__tr|A0A7D7A357|A0A7D7A357_9CLOTTyrosine-proteinphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_22415PE=4SV=1	REV__tr|A0A7D7A357|A0A7D7A357_9CLOTTyrosine-proteinphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_22415PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	495.7997741699219	2	495.808377	989.6022	1.309	0.00064901	-3.4421	-0.0017066	-2.1331	-0.0010576	495.80674533639706	147.54	1.119	147.54	147.11	148.23	0					32	22	2	0	0	0	0.7043	1	17236	17236		42.474	1.9018	1	82639	+		45576	32569	37733	37756	49038	49038					0.10698343439469227
QIYTKLVE	8	Unmodified	_QIYTKLVE_					0	0	0			REV__nc|ENSG00000111581|P57740-3|NUP107	REV__nc|ENSG00000111581|P57740-3|NUP107	MULTI-SECPEP	OvCa9_classI_Rep2	2	497.8286437988281	2	497.2844	992.554247	1.742	0.00086629	-1.9453	-0.00096737	-0.20327	-0.00010108	497.2832109339304	89.557	1.6818	88.255	87.889	89.571	-1.302					78	33	4	0	0	0	0.028476	1	7855	7855		20.947	0	1	186320	+		45577	18039	37734	37757	49039	49039					0.05767224728754172
QKAAAEQK	8	Unmodified	_QKAAAEQK_					0	0	0			REV__ENSG00000164743|ENST00000297324|C8orf48	REV__ENSG00000164743|ENST00000297324|C8orf48	MULTI-SECPEP	OvCa9_classI_Rep4_	4	437.2625427246094	2	437.243067	872.47158	-1.0595	-0.00046325	2.4105	0.001054	1.3511	0.00059075	437.24410916704807	50.455	1.0317	47.314	46.922	47.954	-3.1416					31	19	2	0	0	0	0.028476	1	2893	2893		120.62	0	1	138380	+		45578	21017	37735	37758	49040	49040					0.030243277206068342
QKAKHMTR	8	Unmodified	_QKAKHMTR_					0	0	0			REV__ENSG00000100557|ENST00000216445|CCDC198	REV__ENSG00000100557|ENST00000216445|CCDC198	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.3178405761719	2	500.27946	998.544368	0.55809	0.0002792	1.5982	0.00079956	2.1563	0.0010788	500.281433936732	63.427	0.15961	63.427	63.337	63.496	0					5	3	2	0	0	0	0.028476	1	5708	5708		30.504	0	1	139360	+		45579	17428	37736	37759	49041	49041					0.045037582424015454
QKALPVCLRRP	11	Unmodified	_QKALPVCLRRP_					0	0	0		ENST00000252674.8_2_19:6211645-6212743:-|nuORF	ENST00000252674.8_2_19:6211645-6212743:-|nuORF	ENST00000252674.8_2_19:6211645-6212743:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	640.8895874023438	2	640.884624	1279.7547	4.2244	0.0027074	3.9588	0.0025372	8.1832	0.0052445	640.8870407090299	132.38	1.5362	130.88	130.54	132.07	-1.5015					82	30	4	0	0	0	0.67529	1	12726	12726		37.812	7.4938	1	355310			45580	9802	37737	37760	49042	49042					0.1260079584453706
QKAMDHKW	8	Unmodified	_QKAMDHKW_					0	0	0			REV__ENST00000367462.4_1_1:190423994-190424048:-|nuORF	REV__ENST00000367462.4_1_1:190423994-190424048:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.2962646484375	2	522.258194	1042.50183	-0.986	-0.00051495	-3.4565	-0.0018052	-4.4425	-0.0023202	522.2562318812838	29.161	0.29963	29.161	29.037	29.337	0					8	5	2	0	0	0	0.028476	1	1036	1036		63.306	0	1	35844	+		45581	24897	37738	37761	49043	49043					-0.017716368858373244
QKANQLAR	8	Unmodified	_QKANQLAR_					0	0	0			REV__CON__Q6IFZ6	REV__CON__Q6IFZ6	MULTI-MSMS	OvCa99_classI_Rep5	1	464.7696228027344	2	464.769783	927.525013	-0.13261	-6.1635E-05	2.3837	0.0011079	2.2511	0.0010463	464.76974357326793	35.567	0.5056	35.567	35.293	35.799	0					25	10	4	0	0	0	0.65582	1	1814	1814		52.299	2.2746	1	270530	+	+	45582	16218	37739	37762	49044	49044					0.05835125223131854
QKASKRHLLSA	11	Unmodified	_QKASKRHLLSA_					0	0	0			REV__ENSG00000096401|ENST00000371477|CDC5L	REV__ENSG00000096401|ENST00000371477|CDC5L	MULTI-MSMS	OvCa9_classI_Rep2	2	619.868896484375	2	619.870028	1237.7255	-3.8587	-0.0023919	2.9348	0.0018192	-0.92393	-0.00057272	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.71789	1	15345	15345		23.523	0	1	492670	+		45583	17306	37740	37763	49045	49045					0.11614974819940471
QKASKRHLLSA	11	Unmodified	_QKASKRHLLSA_					0	0	0			REV__ENSG00000096401|ENST00000371477|CDC5L	REV__ENSG00000096401|ENST00000371477|CDC5L	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8712768554688	2	619.870028	1237.7255	-3.6059	-0.0022352	2.5915	0.0016064	-1.0145	-0.00062885	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.7046	1	12750	12750		28.081	2.5074	1	664560	+		45584	17306	37740	37763	49046	49046					0.11614974819940471
QKCFNKAR	8	Unmodified	_QKCFNKAR_					0	0	0		DOCK10|p.I1947Dfs*8|1|0.06|ENSG00000135905|chr2:224775073-224775080|CCTGGATG/-|frameshift_variant;nc|ENSG00000135905|Q96BY6-3|DOCK10;ENSG00000135905|ENST00000258390|DOCK10	DOCK10|p.I1947Dfs*8|1|0.06|ENSG00000135905|chr2:224775073-224775080|CCTGGATG/-|frameshift_variant	DOCK10|p.I1947Dfs*8|1|0.06|ENSG00000135905|chr2:224775073-224775080|CCTGGATG/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.7895812988281	2	497.766186	993.517819	-1.2153	-0.00060492	1.4634	0.00072842	0.24812	0.0001235	497.76688951627625	45.243	0.15467	42.204	42.127	42.281	-3.0385					4	2	2	0	0	0	0.028476	1	2290	2290		40.573	8.6178	1	18285			45585	757	37741	37764	49047	49047					0.02080069351052316
QKDFDDLCSL	10	Unmodified	_QKDFDDLCSL_					0	0	0		ENST00000563542.5_1_15:72185266-72338904:-|nuORF;MYO9A|p.E2496Lfs*8|1|0.27|ENSG00000066933|chr15:71826741-71826742|-/AA|frameshift_variant;MYO9A|p.E2496Tfs*17|1|0.24|ENSG00000066933|chr15:71826742-71826743|-/ACCCACCTTTGGGAAGGGAAAAGAGGGTG|frameshift_variant;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;nc|ENSG00000066933|B2RTY4-3|MYO9A	ENST00000563542.5_1_15:72185266-72338904:-|nuORF	ENST00000563542.5_1_15:72185266-72338904:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	592.759521484375	2	592.268621	1182.52269	0.92375	0.00054711	-1.878	-0.0011123	-0.9543	-0.0005652	592.2675033754464	151.43	0.54964	151.43	151.15	151.7	0					21	10	3	0	0	0	0.026714	1	17699	17699		42.864	4.0581	1	136890			45586	1362	37742	37765	49048	49048					-0.06127136087525287
QKDILEQAR	9	Unmodified	_QKDILEQAR_					0	0	0		ENSG00000196126|ENST00000360004|HLA-DRB1	ENSG00000196126|ENST00000360004|HLA-DRB1	ENSG00000196126|ENST00000360004|HLA-DRB1	MULTI-MSMS	OvCa99_classI_Rep5	1	550.8062744140625	2	550.806562	1099.59857	-0.98669	-0.00054348	0.47504	0.00026165	-0.51166	-0.00028182	550.8065839879104	41.998	1.2892	41.998	41.637	42.926	0					92	29	6	0	0	0	0.049969	2	2674	2653;2674		118.74	5.4339	1	6694800			45587	8566	37743	37766	49049;49050	49050					0.052756288749378655
QKDKFTKLRPL	11	Unmodified	_QKDKFTKLRPL_					0	0	0		ENSG00000137338|ENST00000682144|PGBD1	ENSG00000137338|ENST00000682144|PGBD1	ENSG00000137338|ENST00000682144|PGBD1	MULTI-SECPEP	OvCa9_classI_Rep2	2	457.7691650390625	3	458.613633	1372.81907	-0.65834	-0.00030192	-2.4494	-0.0011233	-3.1077	-0.0014252	458.6125599957135	33.888	0.54195	31.178	31.021	31.563	-2.7097					14	10	2	0	0	0	0.026068	1	1253	1253		27.644	4.266	1	22924			45588	4579	37744	37767	49051	49051					0.14757274202338522
QKDLYQGFS	9	Unmodified	_QKDLYQGFS_					0	0	0			REV__tr|A0A7D7A4D7|A0A7D7A4D7_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02640PE=3SV=1	REV__tr|A0A7D7A4D7|A0A7D7A4D7_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02640PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	543.267578125	2	543.266739	1084.51892	-0.56351	-0.00030614	1.0516	0.00057132	0.48812	0.00026518	543.2670849682806	59.082	1.3838	59.082	58.696	60.079	0					99	35	6	0	0	0	0.27001	1	5046	5046		66.429	6.311	1	9181500	+		45589	32604	37745	37768	49052	49052					-0.019954377990416106
QKDSKNPLP	9	Unmodified	_QKDSKNPLP_					0	0	0		ENST00000507707.1_1_5:42466060-42468762:-|nuORF	ENST00000507707.1_1_5:42466060-42468762:-|nuORF	ENST00000507707.1_1_5:42466060-42468762:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.7674560546875	2	513.782556	1025.55056	0.023333	1.1988E-05	-0.66682	-0.0003426	-0.64349	-0.00033061	513.7821561408332	59.511	0.78499	56.119	55.854	56.639	-3.392					27	15	2	0	0	0	0.027433	1	4015	4015		54.776	8.8041	1	176310			45590	12933	37746	37769	49053	49053					0.03880554954912441
QKDSKNPLP	9	Unmodified	_QKDSKNPLP_					0	0	0		ENST00000507707.1_1_5:42466060-42468762:-|nuORF	ENST00000507707.1_1_5:42466060-42468762:-|nuORF	ENST00000507707.1_1_5:42466060-42468762:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	513.782556	1025.55056	-0.29149	-0.00014976	-0.21515	-0.00011054	-0.50664	-0.0002603	513.7824156345926	58.943	0.77153	56.163	55.838	56.61	-2.7801	0.021732	0.00031146	NaN	54.776	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30174			45591	12933	37746	37769							0.03880554954912441
QKDVQIIVF	9	Unmodified	_QKDVQIIVF_					0	0	0		ENST00000482824.1_1_3:15676934-15683645:+|nuORF;ENSG00000169814|ENST00000643237|BTD;nc|ENSG00000169814|P43251|BTD;nc|ENSG00000169814|P43251-3|BTD;nc|ENSG00000169814|P43251-2|BTD	ENST00000482824.1_1_3:15676934-15683645:+|nuORF	ENST00000482824.1_1_3:15676934-15683645:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3163452148438	2	545.318774	1088.623	-2.8527	-0.0015556	-0.96726	-0.00052747	-3.8199	-0.0020831	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.55588	1	11820	11820		37.159	1.5408	1	337600			45592	7040	37747	37770	49054	49054					0.08222889028479585
QKEDKYKI	8	Unmodified	_QKEDKYKI_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.7615356445312	2	526.292756	1050.57096	2.3642	0.0012442	-4.3033	-0.0022648	-1.9391	-0.0010206	526.2922008645909	89.232	0.43113	89.232	89.004	89.435	0					21	10	3	0	0	0	0.028476	1	9498	9498		34.173	21.213	1	280790			45593	7004	37748	37771	49055	49055					0.04769725614710296
QKEEWWIKRLR	11	Unmodified	_QKEEWWIKRLR_					0	0	0			REV__ENST00000357242.9_1_X:106045958-106046036:+|nuORF	REV__ENST00000357242.9_1_X:106045958-106046036:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.2738037109375	3	524.631687	1570.87323	-1.1749	-0.00061637	-0.95281	-0.00049987	-2.1277	-0.0011162	524.6310857808382	100.59	1.2653	98.989	98.706	99.972	-1.6053					54	24	3	0	0	0	0.026302	1	6811	6811		17.167	11.468	1	137490	+		45594	24780	37749	37772	49056	49056					0.1106286635390461
QKEEWWIKRLR	11	Unmodified	_QKEEWWIKRLR_					0	0	0			REV__ENST00000357242.9_1_X:106045958-106046036:+|nuORF	REV__ENST00000357242.9_1_X:106045958-106046036:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	524.631687	1570.87323	-1.2102	-0.00063489	-2.1412	-0.0011234	-3.3514	-0.0017582	524.9647215632427	101.2	1.163	98.937	98.602	99.765	-2.2665	0.040399	-0.0019279	NaN	12.433	50	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163460	+		45595	24780	37749	37772							0.1106286635390461
QKEILLKQKTW	11	Unmodified	_QKEILLKQKTW_					0	0	0		ENSG00000166004|ENST00000325212|CEP295;nc|ENSG00000166004|Q9C0D2-3|CEP295	ENSG00000166004|ENST00000325212|CEP295	ENSG00000166004|ENST00000325212|CEP295	MULTI-MSMS	OvCa9_classI_Rep2	2	472.2833557128906	3	472.285405	1413.83439	-4.9212	-0.0023242	1.0993	0.00051918	-3.8219	-0.001805	472.28593650401154	158.64	2.575	158.42	157.5	160.08	-0.22696					106	62	3	0	0	0	0.72545	1	16146	16146		9.6461	0	1	56212			45596	6628	37750	37773	49057	49057					0.14402140999550284
QKEQLLRV	8	Unmodified	_QKEQLLRV_					0	0	0		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1;USO1|p.L895Hfs*10|1|0.25|ENSG00000138768|chr4:75812257-75812258|-/GCAT|frameshift_variant;USO1|p.L895Hfs*11|1|0.25|ENSG00000138768|chr4:75812259-75812260|-/ATATGCA|frameshift_variant	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.3090515136719	2	507.308741	1012.60293	-0.40408	-0.00020499	0.083523	4.2372E-05	-0.32056	-0.00016262	507.30861730397305	48.125	1.6313	45.018	44.287	45.918	-3.1077					79	31	5	0	0	0	0.67745	1	2636	2636		47.916	0	1	675590			45597	4726	37751	37774	49058	49058					0.0971313808852301
QKEREKIAQ	9	Unmodified	_QKEREKIAQ_					0	0	0		tr|A0A7D7AC87|A0A7D7AC87_9CLOTSulfate/molybdateABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18245PE=4SV=1	tr|A0A7D7AC87|A0A7D7AC87_9CLOTSulfate/molybdateABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18245PE=4SV=1	tr|A0A7D7AC87|A0A7D7AC87_9CLOTSulfate/molybdateABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18245PE=4SV=1	MSMS	OvCa9_classI_Rep2	2	565.321044921875	2	565.319837	1128.62512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.634	1	25.924	25.424	26.424	-2.7097								0	0	0	0.25036	1	613	613		18.262	2.6203	1				45598	36224	37752	37775	49059	49059					0.06595317766277731
QKFQFDME	8	Unmodified	_QKFQFDME_					0	0	0		tr|A0A553SHP1|A0A553SHP1_NIACIMBLfoldmetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_13350PE=4SV=1	tr|A0A553SHP1|A0A553SHP1_NIACIMBLfoldmetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_13350PE=4SV=1	tr|A0A553SHP1|A0A553SHP1_NIACIMBLfoldmetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_13350PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3214111328125	2	536.742042	1071.46953	-1.3265	-0.00071199	-2.5424	-0.0013646	-3.8689	-0.0020766	536.7406360479634	64.067	0.56674	64.067	63.894	64.461	0					22	13	3	0	0	0	0.028476	1	5856	5856		71.296	5.4925	1	527610			45599	33293	37753	37776	49060	49060					-0.06334469079502014
QKFRLWRWLQK	11	Unmodified	_QKFRLWRWLQK_					0	0	0		nc|ENSG00000177054|Q8IUH4-2|ZDHHC13;nc|ENSG00000177054|Q8IUH4-3|ZDHHC13;ENST00000525490.5_1_11:19138758-19188042:+|nuORF;ENSG00000177054|ENST00000446113|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	nc|ENSG00000177054|Q8IUH4-2|ZDHHC13	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2518920898438	3	530.312288	1587.91504	-0.20704	-0.00010979	-3.7165	-0.0019709	-3.9235	-0.0020807	530.3099798298688	30.128	0.44881	30.128	29.885	30.334	0					13	8	3	0	0	0	0.026435	1	1124	1124		9.6461	0	1	25490			45600	7653	37754	37777	49061	49061					0.14459466833113765
QKGLLCAL	8	Unmodified	_QKGLLCAL_					0	0	0			REV__nc|ENSG00000167419|P22079-2|LPO	REV__nc|ENSG00000167419|P22079-2|LPO	MULTI-MSMS	OvCa99_classI_Rep5	1	423.24884033203125	2	423.249306	844.484059	2.7085	0.0011464	-2.5173	-0.0010654	0.19119	8.0919E-05	423.2479897492642	89.08	0.59258	89.08	88.883	89.476	0					28	14	3	0	0	0	0.74361	1	9499	9499		29.842	0	1	1117700	+		45601	21276	37755	37778	49062	49062					0.05559647859297456
QKGVGIKSILT	11	Unmodified	_QKGVGIKSILT_					0	0	0			REV__tr|A0A553SIJ2|A0A553SIJ2_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14860PE=4SV=1	REV__tr|A0A553SIJ2|A0A553SIJ2_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14860PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	572.359130859375	2	572.358431	1142.70231	0.633	0.0003623	0.71073	0.00040679	1.3437	0.0007691	572.3586945598181	65.982	0.86411	63.036	62.806	63.67	-2.9459					34	16	3	0	0	0	0.72485	1	2691	2691		17.468	0.10304	1	43652	+		45602	29896	37756	37779	49063	49063					0.13666535982611094
QKHCCSVLK	9	Unmodified	_QKHCCSVLK_					0	0	0			REV__MER49_dup1305|chr21:41210187-41211078:+|1.3236421071491895|0.4412608656295442|1.58|428.0|57|3|anti-sense	REV__MER49_dup1305|chr21:41210187-41211078:+|1.3236421071491895|0.4412608656295442|1.58|428.0|57|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.2863159179688	2	523.267704	1044.52086	-0.108	-5.6513E-05	-0.4047	-0.00021177	-0.5127	-0.00026828	523.2677540574459	94.806	0.39314	93.706	93.606	93.999	-1.0995					11	7	2	0	0	0	0.027433	1	8520	8520		42.396	0	1	11930	+		45603	28650	37757	37780	49064	49064					0.00037576413546958065
QKHCPICLD	9	Unmodified	_QKHCPICLD_					0	0	0			REV__tr|A0A553SFS1|A0A553SFS1_NIACIHNHendonucleaseOS=NialliacirculansOX=1397GN=CEQ21_09400PE=4SV=1	REV__tr|A0A553SFS1|A0A553SFS1_NIACIHNHendonucleaseOS=NialliacirculansOX=1397GN=CEQ21_09400PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.8113403320312	2	528.751887	1055.48922	-0.28547	-0.00015094	-3.3954	-0.0017953	-3.6809	-0.0019463	528.750002878807	70.521	0.97197	67.95	67.663	68.635	-2.5707					38	18	3	0	0	0	0.027462	1	5710	5710		35.618	19.976	1	45095	+		45604	29615	37758	37781	49065	49065					-0.03630416340411102
QKHFKAQL	8	Unmodified	_QKHFKAQL_					0	0	0		ENSG00000102239|ENST00000370648|BRS3	ENSG00000102239|ENST00000370648|BRS3	ENSG00000102239|ENST00000370648|BRS3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.30517578125	2	500.290351	998.566149	-1.4132	-0.00070701	-2.2745	-0.0011379	-3.6877	-0.0018449	500.28899248933163	43.237	0.63084	40.23	40.01	40.641	-3.0074					16	11	2	0	0	0	0.028476	1	2092	2092		26.796	4.8362	1	40557			45605	2231	37759	37782	49066	49066					0.06680886262597596
QKHREALK	8	Unmodified	_QKHREALK_					0	0	0			REV__ENSG00000135862|ENST00000258341|LAMC1	REV__ENSG00000135862|ENST00000258341|LAMC1	MULTI-MSMS	OvCa99_classI_Rep5	1	505.2987365722656	2	505.298707	1008.58286	-0.089711	-4.5331E-05	-0.04337	-2.1915E-05	-0.13308	-6.7245E-05	505.2985791198611	22.246	0.53699	22.246	22.08	22.617	0					29	12	4	0	0	0	0.73494	1	183	183		34.173	2.2177	1	624720	+		45606	19329	37760	37783	49067	49067					0.07891387148549711
QKIATVTIVF	10	Unmodified	_QKIATVTIVF_					0	0	0			REV__ENSG00000058063|ENST00000323116|ATP11B;REV__ENSG00000068650|ENST00000375645|ATP11A;REV__nc|ENSG00000101974|Q8NB49-2|ATP11C	REV__ENSG00000058063|ENST00000323116|ATP11B	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.3392944335938	2	560.342249	1118.66995	-5.405	-0.0030286	1.8017	0.0010096	-3.6033	-0.0020191	560.3432112723539	161.88	2.7705	160.26	159.52	162.29	-1.6239					146	74	5	0	0	0	0.6104	1	16002	16002		40.778	6.6056	1	403070	+		45607	16724;16855;17531	37761	37784	49068	49068					0.1153574857962667
QKICLLQFQGC	11	Unmodified	_QKICLLQFQGC_					0	0	0		ENST00000402551.5_1_19:49309936-49311037:-|nuORF;ENST00000595376.1_1_19:49309936-49310389:-|nuORF	ENST00000402551.5_1_19:49309936-49311037:-|nuORF	ENST00000402551.5_1_19:49309936-49311037:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	640.8311767578125	2	640.828126	1279.6417	-0.20586	-0.00013192	2.7209	0.0017436	2.515	0.0016117	640.8297979083454	44.621	0.44415	44.621	44.396	44.84	0					21	9	3	0	0	0	0.71498	1	3032	3032		24.519	0.99649	1	526000			45608	11432	37762	37785	49069	49069					0.013063593363540349
QKIFFGPFL	9	Unmodified	_QKIFFGPFL_					0	0	0			REV__ENST00000456675.2_1_10:22610576-22615415:+|nuORF	REV__ENST00000456675.2_1_10:22610576-22615415:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.3532104492188	2	548.813128	1095.6117	-0.65694	-0.00036054	-1.2199	-0.00066948	-1.8768	-0.00103	548.812878368335	82.861	0.48795	80.178	79.782	80.27	-2.683					13	9	2	0	0	0	0.027462	1	6874	6874		26.796	0	1	15343	+		45609	26032	37763	37786	49070	49070					0.06772111724990282
QKIKSLMTRQ	10	Unmodified	_QKIKSLMTRQ_					0	0	0		ENSG00000004766|ENST00000305866|VPS50;ENST00000477935.1_1_7:92861780-92886786:+|nuORF;ENST00000485994.5_1_7:92861780-92886786:+|nuORF;nc|ENSG00000004766|Q96JG6-2|VPS50	ENSG00000004766|ENST00000305866|VPS50	ENSG00000004766|ENST00000305866|VPS50	MULTI-MSMS	OvCa9_classI_Rep2	2	411.57861328125	3	411.576302	1231.70708	4.5945	0.001891	0.67616	0.00027829	5.2707	0.0021693	411.57657624517054	25.113	0.89927	22.404	22.261	23.161	-2.7097					40	19	3	0	0	0	0.54579	1	216	216		48.602	7.5215	1	146440			45610	831	37764	37787	49071	49071					0.10049096853731498
QKIKSLMTRQ	10	Unmodified	_QKIKSLMTRQ_					0	0	0		ENSG00000004766|ENST00000305866|VPS50;ENST00000477935.1_1_7:92861780-92886786:+|nuORF;ENST00000485994.5_1_7:92861780-92886786:+|nuORF;nc|ENSG00000004766|Q96JG6-2|VPS50	ENSG00000004766|ENST00000305866|VPS50	ENSG00000004766|ENST00000305866|VPS50	MULTI-MSMS	OvCa9_classI_Rep2	2	616.8648681640625	2	616.860815	1231.70708	3.1131	0.0019204	1.8547	0.0011441	4.9678	0.0030645	616.8619391818793	25.113	1.05	22.404	22.261	23.311	-2.7097					60	23	4	0	0	0	0.76328	1	246	246		18.262	14.852	1	418920			45611	831	37764	37787	49072	49072					0.10049096853731498
QKIKSPKLN	9	Unmodified	_QKIKSPKLN_					0	0	0			REV__ENSG00000166963|ENST00000300231|MAP1A	REV__ENSG00000166963|ENST00000300231|MAP1A	MULTI-MSMS	OvCa9_classI_Rep2	2	528.3324584960938	2	528.332216	1054.64988	3.0268	0.0015991	-3.0942	-0.0016348	-0.067462	-3.5642E-05	528.330384856165	25.512	0.98969	22.802	22.428	23.418	-2.7097					46	22	4	0	0	0	0.63422	1	262	262		27.882	0	1	151950	+		45612	21242	37765	37788	49073	49073					0.12473997639654044
QKILIPPTSLE	11	Unmodified	_QKILIPPTSLE_					0	0	0			REV__ENST00000263228.3_1_9:33920018-33920222:+|nuORF	REV__ENST00000263228.3_1_9:33920018-33920222:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8690795898438	2	619.871371	1237.72819	-1.8762	-0.001163	-1.2328	-0.00076421	-3.109	-0.0019272	619.8704234308321	147.79	3.8764	146.35	144.25	148.12	-1.4351					189	77	4	0	0	0	0.71191	1	14475	14475		25.574	3.6142	1	269210	+		45613	23994	37766	37789	49074	49074					0.11883385434225602
QKINIHKGR	9	Unmodified	_QKINIHKGR_					0	0	0			REV__tr|A0A553SNQ6|A0A553SNQ6_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_24705PE=4SV=1	REV__tr|A0A553SNQ6|A0A553SNQ6_NIACIDUF3231familyproteinOS=NialliacirculansOX=1397GN=CEQ21_24705PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	546.8114013671875	2	547.333082	1092.65161	-0.32564	-0.00017824	-3.5952	-0.0019678	-3.9208	-0.002146	547.3312805683512	77.407	0.73082	75.617	75.364	76.094	-1.7894					17	13	2	0	0	0	0.027462	1	6417	6417		30.504	6.3009	1	17018	+		45614	30439	37767	37790	49075	49075					0.10899051448268438
QKITTLAPS	9	Unmodified	_QKITTLAPS_					0	0	0		ENST00000418351.1_1_15:44281261-44281585:-|nuORF	ENST00000418351.1_1_15:44281261-44281585:-|nuORF	ENST00000418351.1_1_15:44281261-44281585:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	479.7815246582031	2	479.782025	957.549496	0.20049	9.6192E-05	-0.6683	-0.00032064	-0.4678	-0.00022444	479.78176555475227	82.038	1.8634	80.39	79.818	81.681	-1.6485					96	36	3	0	0	0	0.42676	1	6995	6995		49.442	1.5259	1	969300			45615	11637	37768	37791	49076	49076					0.0690234058599799
QKIVNDLEQ	9	Unmodified	_QKIVNDLEQ_					0	0	0			REV__nc|ENSG00000141293|Q86WV1-2|SKAP1	REV__nc|ENSG00000141293|Q86WV1-2|SKAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	543.7970581054688	2	543.793121	1085.57169	0.64678	0.00035172	1.7428	0.0009477	2.3895	0.0012994	543.7943955452278	66.94	4.5337	66.94	66.575	71.109	0					335	112	6	0	0	0	0.21231	1	6571	6571		74.255	7.8258	1	365280000	+		45616	19724	37769	37792	49077	49077					0.0323252026373666
QKIVRRVQEV	10	Unmodified	_QKIVRRVQEV_					0	0	0		RYR1|p.E3590Q|1|0.26|ENSG00000196218|chr19:38527728-38527728|G/C|missense_variant	RYR1|p.E3590Q|1|0.26|ENSG00000196218|chr19:38527728-38527728|G/C|missense_variant	RYR1|p.E3590Q|1|0.26|ENSG00000196218|chr19:38527728-38527728|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	627.8854370117188	2	627.885678	1253.7568	1.5846	0.00099492	-1.5011	-0.00094252	0.083456	5.2401E-05	627.8845502144422	27.594	0.6021	24.885	24.742	25.344	-2.7097					21	13	3	0	0	0	0.82648	1	504	504		15.642	1.5047	1	23299			45617	32795	37770	37793	49078	49078					0.14007547853998403
QKKAIEKLE	9	Unmodified	_QKKAIEKLE_					0	0	0			REV__tr|A0A7D6W1R7|A0A7D6W1R7_9CLOTGfo/Idh/MocAfamilyoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03705PE=4SV=1	REV__tr|A0A7D6W1R7|A0A7D6W1R7_9CLOTGfo/Idh/MocAfamilyoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03705PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	544.8071899414062	2	543.829506	1085.64446	-0.56275	-0.00030604	-1.6751	-0.00091095	-2.2378	-0.001217	543.8282530592851	77.922	0.77249	76.133	75.937	76.709	-1.7894					23	14	2	0	0	0	0.027457	1	6532	6532		40.058	0.80534	1	17175	+		45618	31888	37771	37794	49079	49079					0.1050627405720661
QKKFEKKEP	9	Unmodified	_QKKFEKKEP_					0	0	0		ENSG00000232030|ENST00000416929|MAGEB6B	ENSG00000232030|ENST00000416929|MAGEB6B	ENSG00000232030|ENST00000416929|MAGEB6B	MULTI-MSMS	OvCa99_classI_Rep5	1	581.3323364257812	2	581.334956	1160.65536	-0.44172	-0.00025679	-2.8978	-0.0016846	-3.3395	-0.0019414	581.3331222579144	22.123	0.25034	22.123	22.017	22.267	0					17	6	3	0	0	0	0.53483	1	176	176		39.253	7.723	1	87989			45619	9289	37772	37795	49080	49080					0.08145676431468019
QKKGQTVFK	9	Unmodified	_QKKGQTVFK_					0	0	0		ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.3175048828125	2	532.316566	1062.61858	-2.0677	-0.0011007	1.6475	0.00087698	-0.42018	-0.00022367	532.3173600519153	43.57	1.1693	40.562	40.326	41.495	-3.0074					41	22	3	0	0	0	0.66262	1	2105	2105		24.519	0	1	325840			45620	4311	37773	37796	49081	49081					0.0897742460556401
QKKGQTVFK	9	Unmodified	_QKKGQTVFK_					0	0	0		ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	MULTI-MATCH	OvCa9_classI_Rep2	2		2	532.316566	1062.61858	-0.40027	-0.00021307	0.10483	5.5802E-05	-0.29545	-0.00015727	532.3164924957825	43.293	0.89167	40.583	40.312	41.203	-2.7097	0.010495	-0.0010852	NaN	24.519	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124260			45621	4311	37773	37796							0.0897742460556401
QKKIEADLH	9	Unmodified	_QKKIEADLH_					0	0	0			REV__tr|A0A553SM18|A0A553SM18_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21635PE=4SV=1	REV__tr|A0A553SM18|A0A553SM18_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21635PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.7911376953125	2	541.303655	1080.59276	0.053608	2.9018E-05	-0.049939	-2.7032E-05	0.0036689	1.986E-06	541.3035638858099	31.183	0.57981	31.183	30.979	31.559	0					23	11	4	0	0	0	0.027426	1	1273	1273		47.657	13.485	1	358810	+		45622	30289	37774	37797	49082	49082					0.05568530363279933
QKKKNRRKLFF	11	Unmodified	_QKKKNRRKLFF_					0	0	0			REV__nc|ENSG00000080031|Q9HD43-3|PTPRH	REV__nc|ENSG00000080031|Q9HD43-3|PTPRH	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3104553222656	3	498.312288	1491.91504	-5.113	-0.0025478	0.297	0.000148	-4.816	-0.0023998	498.3123780141879	160.35	1.8473	160.12	159.68	161.53	-0.22697					120	37	4	0	0	0	0.7257	1	16335	16335		6.3209	0.31984	1	150420	+		45623	17049	37775	37798	49083	49083					0.18875466833105747
QKKKNRRKLFF	11	Unmodified	_QKKKNRRKLFF_					0	0	0			REV__nc|ENSG00000080031|Q9HD43-3|PTPRH	REV__nc|ENSG00000080031|Q9HD43-3|PTPRH	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3087463378906	3	498.312288	1491.91504	-6.1524	-0.0030658	1.7848	0.00088941	-4.3676	-0.0021764	498.3133054732335	158.89	2.5083	157.31	156.27	158.78	-1.5859					162	69	3	0	0	0	0.72582	1	15658	15658		3.4087	0.19739	1	46050	+		45624	17049	37775	37798	49084	49084					0.18875466833105747
QKKLVEIK	8	Unmodified	_QKKLVEIK_					0	0	0			REV__nc|ENSG00000121289|Q96ST8-2|CEP89	REV__nc|ENSG00000121289|Q96ST8-2|CEP89	MULTI-MSMS	OvCa99_classI_Rep5	1	493.32354736328125	2	493.32386	984.633166	-0.45273	-0.00022334	0.2944	0.00014523	-0.15833	-7.8108E-05	493.32379708552185	35.818	0.46042	35.818	35.614	36.074	0					22	9	4	0	0	0	0.60899	1	1842	1842		62.107	5.3864	1	382560	+		45625	18536	37776	37799	49085	49085					0.14023496753702602
QKKNPDSL	8	Unmodified	_QKKNPDSL_					0	0	0		ENST00000493708.5_1_7:65552693-65554198:+|nuORF;nc|ENSG00000126522|P04424-3|ASL;nc|ENSG00000126522|P04424-2|ASL;ENSG00000126522|ENST00000304874|ASL	ENST00000493708.5_1_7:65552693-65554198:+|nuORF	ENST00000493708.5_1_7:65552693-65554198:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.7658386230469	2	465.256174	928.497795	0.85288	0.00039681	-3.991	-0.0018568	-3.1381	-0.00146	465.25650553035007	68.106	0.43617	64.616	64.381	64.818	-3.4902					10	8	2	0	0	0	0.028476	1	5009	5009		49.442	8.6634	1	12046			45626	3785	37777	37800	49086	49086					0.03068596892092046
QKKNPDSL	8	Unmodified	_QKKNPDSL_					0	0	0		ENST00000493708.5_1_7:65552693-65554198:+|nuORF;nc|ENSG00000126522|P04424-3|ASL;nc|ENSG00000126522|P04424-2|ASL;ENSG00000126522|ENST00000304874|ASL	ENST00000493708.5_1_7:65552693-65554198:+|nuORF	ENST00000493708.5_1_7:65552693-65554198:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	465.256174	928.497795	-0.21662	-0.00010079	-10.234	-0.0047615	-10.451	-0.0048623	465.25161836075137	66.984	0.24715	64.323	64.248	64.495	-2.661	-0.14677	-0.0023644	NaN	40.778	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14642			45627	3785	37777	37800							0.03068596892092046
QKKPAESQKI	10	Unmodified	_QKKPAESQKI_					0	0	0		ENSG00000145386|ENST00000274026|CCNA2	ENSG00000145386|ENST00000274026|CCNA2	ENSG00000145386|ENST00000274026|CCNA2	MULTI-MSMS	OvCa99_classI_Rep5	1	578.83984375	2	578.837862	1155.66117	-0.51274	-0.00029679	0.23412	0.00013552	-0.27861	-0.00016127	578.8380033521025	58.592	1.7164	58.592	58.363	60.079	0					84	43	4	0	0	0	0.079666	1	5010	5010		118.74	0	1	10155000			45628	5220	37778	37801	49087	49087					0.08956774943135315
QKKPLVGKK	9	Unmodified	_QKKPLVGKK_					0	0	0		ENSG00000174444|ENST00000307961|RPL4;ENST00000422486.1_1_3:185135285-185135612:-|nuORF;ENST00000567229.5_1_15:66791747-66793486:-|nuORF	ENSG00000174444|ENST00000307961|RPL4	ENSG00000174444|ENST00000307961|RPL4	MULTI-MSMS	OvCa9_classI_Rep2	2	513.344970703125	2	513.345126	1024.6757	2.252	0.0011561	-2.4669	-0.0012664	-0.21488	-0.00011031	513.3436996113568	27.778	1.0347	25.068	24.871	25.906	-2.7097					48	22	3	0	0	0	0.40667	2	531	531;538		51.335	14.176	1	181780			45629	7465	37779	37802	49088;49089	49088					0.16434891881931435
QKKQKKRRFVF	11	Unmodified	_QKKQKKRRFVF_					0	0	0		ENST00000515800.6_1_5:86682715-86685204:+|nuORF	ENST00000515800.6_1_5:86682715-86685204:+|nuORF	ENST00000515800.6_1_5:86682715-86685204:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3102111816406	3	498.312288	1491.91504	-5.113	-0.0025478	0.297	0.000148	-4.816	-0.0023998	498.3123780141879	160.35	1.8473	160.12	159.68	161.53	-0.22697					120	37	4	0	0	0	0.7257	2	16305	16305;16384		6.3209	2.7018	1	150420			45630	13054	37780	37803	49090;49091	49090					0.1887546683308301
QKKQSAAVV	9	Unmodified	_QKKQSAAVV_					0	0	0			REV__nc|ENSG00000163235|P01135-2|TGFA	REV__nc|ENSG00000163235|P01135-2|TGFA	MULTI-MSMS	OvCa9_classI_Rep2	2	479.7848205566406	2	479.787641	957.56073	-2.7309	-0.0013103	2.326	0.001116	-0.40495	-0.00019429	479.7886280773358	36.925	0.73951	34.216	34.09	34.83	-2.7097					26	14	3	0	0	0	0.44568	1	1613	1613		47.657	1.7054	1	115520	+		45631	20819	37781	37804	49092	49092					0.08025162680144149
QKKRAFYR	8	Unmodified	_QKKRAFYR_					0	0	0		ENST00000518080.2_1_8:28827959-28867235:+|nuORF;nc|ENSG00000147421|Q6NT76-4|HMBOX1;nc|ENSG00000147421|Q6NT76-2|HMBOX1;nc|ENSG00000147421|Q6NT76-3|HMBOX1;ENSG00000147421|ENST00000287701|HMBOX1;nc|ENSG00000147421|Q6NT76-5|HMBOX1	ENST00000518080.2_1_8:28827959-28867235:+|nuORF	ENST00000518080.2_1_8:28827959-28867235:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.776123046875	2	548.82235	1095.63015	-0.26371	-0.00014473	2.16	0.0011854	1.8963	0.0010407	548.8228137552873	69.392	0.40726	69.392	69.106	69.513	0					12	9	2	0	0	0	0.028476	1	6610	6610		33.516	18.851	1	215850			45632	5356	37782	37805	49093	49093					0.0861566641956415
QKKWKTRRNQF	11	Unmodified	_QKKWKTRRNQF_					0	0	0			REV__ENSG00000229544|ENST00000451024|NKX1-2	REV__ENSG00000229544|ENST00000451024|NKX1-2	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.8327941894531	3	507.291664	1518.85316	2.5897	0.0013137	-1.666	-0.00084513	0.92374	0.00046861	507.2905590357945	75.538	0.66577	75.538	75.33	75.996	0					37	16	3	0	0	0	0.026364	1	7496	7496		13.508	5.4736	1	1832300	+		45633	23377	37783	37806	49094	49094					0.11449115413984146
QKLDEKSVK	9	Unmodified	_QKLDEKSVK_					0	0	0			REV__ENSG00000114124|ENST00000682958|GRK7	REV__ENSG00000114124|ENST00000682958|GRK7	MULTI-MSMS	OvCa99_classI_Rep5	1	537.8125	2	537.811313	1073.60807	-0.77617	-0.00041743	-0.38104	-0.00020493	-1.1572	-0.00062236	537.8112638803045	28.365	1.496	28.365	28.14	29.636	0					84	29	6	0	0	0	0.046778	2	910	910;934		120.87	8.1094	1	6992400	+		45634	18179	37784	37807	49095;49096	49095					0.07421397160487686
QKLEIPFV	8	Unmodified	_QKLEIPFV_					0	0	0			REV__ENSG00000155542|ENST00000285947|SETD9	REV__ENSG00000155542|ENST00000285947|SETD9	MULTI-MSMS	OvCa99_classI_Rep5	1	487.2900085449219	2	487.289485	972.564418	0.99443	0.00048458	0.5508	0.0002684	1.5452	0.00075298	487.28973993505514	155.01	1.2668	155.01	154.62	155.89	0					51	24	4	0	0	0	0.74229	1	18169	18169		30.504	1.3541	1	235890	+		45635	20429	37785	37808	49097	49097					0.07703832454001258
QKLEQQKKL	9	Unmodified	_QKLEQQKKL_					0	0	0		tr|A0A553SMQ4|A0A553SMQ4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_22895PE=4SV=1	tr|A0A553SMQ4|A0A553SMQ4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_22895PE=4SV=1	tr|A0A553SMQ4|A0A553SMQ4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_22895PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	571.8474731445312	2	571.84823	1141.68191	-1.084	-0.00061991	0.78997	0.00045174	-0.29408	-0.00016817	571.848649457071	27.415	0.74973	27.415	27.241	27.991	0					39	14	5	0	0	0	0.010478	1	802	802		167.23	0	1	1191900			45636	33861	37786	37809	49098	49098					0.11673365322803875
QKLGGELQF	9	Unmodified	_QKLGGELQF_					0	0	0			REV__ENSG00000175899|ENST00000318602|A2M	REV__ENSG00000175899|ENST00000318602|A2M	MULTI-MSMS	OvCa9_classI_Rep3	3	510.2817687988281	2	510.279649	1018.54475	1.5054	0.00076817	1.6141	0.00082366	3.1195	0.0015918	510.28027552379746	62.202	1.7602	59.168	58.656	60.417	-3.0339					84	39	3	0	0	0	0.28934	1	2226	2226		64.207	3.2353	1	77332	+		45637	21922	37787	37810	49099	49099					0.036214564432498264
QKLIIAQK	8	Unmodified	_QKLIIAQK_					0	0	0			REV__ENSG00000187240|ENST00000375735|DYNC2H1	REV__ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.3108215332031	2	471.310752	940.606951	1.3289	0.00062632	-1.6854	-0.00079433	-0.35646	-0.000168	471.3099028886094	32.057	2.5601	29.362	28.732	31.293	-2.6954					224	67	4	0	0	0	0.73626	1	848	848		33.516	0	1	1074400	+		45638	22636	37788	37811	49100	49100					0.13427227582224077
QKLIIPSGSC	10	Unmodified	_QKLIIPSGSC_					0	0	0		ENST00000521214.5_1_8:48191985-48612988:+|nuORF;ENST00000524141.5_1_8:48173550-48625457:+|nuORF;nc|ENSG00000164808|Q14159-2|SPIDR;nc|ENSG00000164808|Q14159-3|SPIDR;ENSG00000164808|ENST00000297423|SPIDR	ENST00000521214.5_1_8:48191985-48612988:+|nuORF	ENST00000521214.5_1_8:48191985-48612988:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2702026367188	2	523.289159	1044.56377	-0.3139	-0.00016426	-4.1038	-0.0021475	-4.4177	-0.0023118	523.2867471380777	57.249	0.21543	57.249	57.18	57.396	0					7	4	2	0	0	0	0.026956	1	4792	4792		26.693	5.746	1	141080			45639	6487	37789	37812	49101	49101					0.043266697426361134
QKLKGKTPPI	10	Unmodified	_QKLKGKTPPI_					0	0	0		ENSG00000132623|ENST00000378392|ANKEF1	ENSG00000132623|ENST00000378392|ANKEF1	ENSG00000132623|ENST00000378392|ANKEF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.352783203125	2	555.355691	1108.69683	-5.7234	-0.0031785	1.8077	0.0010039	-3.9157	-0.0021746	555.3566390635189	159.36	1.8651	157.77	157.41	159.27	-1.5858					127	42	5	0	0	0	0.72319	1	15741	15741		27.882	5.9224	1	1093300			45640	4154	37790	37813	49102	49102					0.14682857190791765
QKLKKLPPGG	10	Unmodified	_QKLKKLPPGG_					0	0	0			REV__nc|ENSG00000166886|Q15742-3|NAB2	REV__nc|ENSG00000166886|Q15742-3|NAB2	MULTI-MSMS	OvCa9_classI_Rep2	2	533.3399658203125	2	533.342584	1064.67061	-5.4005	-0.0028803	1.293	0.00068962	-4.1075	-0.0021907	533.3431631989303	156.44	1.0857	156.21	155.92	157	-0.22696					71	26	4	0	0	0	0.81289	1	15904	15904		17.365	0	1	260540	+		45641	21230	37791	37814	49103	49103					0.1408658801931324
QKLKKLPPGG	10	Unmodified	_QKLKKLPPGG_					0	0	0			REV__nc|ENSG00000166886|Q15742-3|NAB2	REV__nc|ENSG00000166886|Q15742-3|NAB2	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.340087890625	2	533.342584	1064.67061	-6.1908	-0.0033018	1.9226	0.0010254	-4.2682	-0.0022764	533.3435201452669	156.94	1.5192	155.39	155.04	156.56	-1.545					135	41	5	0	0	0	0.75594	1	15540	15540		24.203	0	1	1621700	+		45642	21230	37791	37814	49104	49104					0.1408658801931324
QKLLEDPVLAL	11	Unmodified	_QKLLEDPVLAL_					0	0	0			REV__nc|ENSG00000086015|Q6P0Q8-2|MAST2	REV__nc|ENSG00000086015|Q6P0Q8-2|MAST2	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8687744140625	2	619.871371	1237.72819	-3.8587	-0.0023919	0.76872	0.00047651	-3.09	-0.0019154	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.70518	1	15182	15182		27.882	3.3631	1	492670	+		45643	17145	37792	37815	49105	49105					0.11883385434225602
QKLLEDPVLAL	11	Unmodified	_QKLLEDPVLAL_					0	0	0			REV__nc|ENSG00000086015|Q6P0Q8-2|MAST2	REV__nc|ENSG00000086015|Q6P0Q8-2|MAST2	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8688354492188	2	619.871371	1237.72819	-2.7857	-0.0017268	-0.3761	-0.00023313	-3.1618	-0.0019599	619.8709153162803	147.4	3.9416	146.45	144.36	148.3	-0.9512					241	78	4	0	0	0	0.65947	1	12428	12428		39.253	5.3312	1	225770	+		45644	17145	37792	37815	49106	49106					0.11883385434225602
QKLLEDPVLAL	11	Unmodified	_QKLLEDPVLAL_					0	0	0			REV__nc|ENSG00000086015|Q6P0Q8-2|MAST2	REV__nc|ENSG00000086015|Q6P0Q8-2|MAST2	MULTI-MSMS	OvCa9_classI_Rep3	3	619.870361328125	2	619.871371	1237.72819	-3.6059	-0.0022352	0.4254	0.00026369	-3.1805	-0.0019715	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.70865	1	12738	12738		26.693	3.1702	1	664560	+		45645	17145	37792	37815	49107	49107					0.11883385434225602
QKLLKKQK	8	Unmodified	_QKLLKKQK_					0	0	0			REV__ENST00000462710.5_1_1:24969817-24973316:+|nuORF	REV__ENST00000462710.5_1_1:24969817-24973316:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3287048339844	2	507.345126	1012.6757	-0.17962	-9.1128E-05	-3.4103	-0.0017302	-3.5899	-0.0018213	507.3424489441877	65.251	0.39217	65.251	65.034	65.426	0					13	9	2	0	0	0	0.028476	1	5974	5974		33.516	0	1	272450	+		45646	19136	37793	37816	49108	49108					0.16986891881936117
QKLLRGEL	8	Unmodified	_QKLLRGEL_					0	0	0		nc|ENSG00000214290|A8K830-3|POU2AF3	nc|ENSG00000214290|A8K830-3|POU2AF3	nc|ENSG00000214290|A8K830-3|POU2AF3	MULTI-SECPEP	OvCa9_classI_Rep3	3	478.28314208984375	2	478.798009	955.581465	-0.42204	-0.00020207	-2.5695	-0.0012303	-2.9916	-0.0014324	478.79693941652243	82.235	0.79823	79.939	79.534	80.332	-2.2963					36	15	4	0	0	0	0.028476	1	4645	4645		63.306	5.495	1	91228			45647	15310	37794	37817	49109	49109					0.10189753059808027
QKLNLDSNK	9	Unmodified	_QKLNLDSNK_					0	0	0		nc|ENSG00000176204|Q86VH4-2|LRRTM4;ENSG00000176204|ENST00000409884|LRRTM4	nc|ENSG00000176204|Q86VH4-2|LRRTM4	nc|ENSG00000176204|Q86VH4-2|LRRTM4	MULTI-MSMS	OvCa9_classI_Rep2	2	530.2925415039062	2	530.293288	1058.57202	-0.57106	-0.00030283	0.21307	0.00011299	-0.35799	-0.00018984	530.2932941647349	44.621	1.194	41.912	41.603	42.797	-2.7097					53	23	3	0	0	0	0.1804	1	2562	2562		79.713	2.866	1	328810			45648	7590	37795	37818	49110	49110					0.04507939983614051
QKLNSILTQP	10	Unmodified	_QKLNSILTQP_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;ENST00000521080.5_1_8:95511544-95524374:-|nuORF	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.3355712890625	2	571.332413	1140.65027	1.1968	0.00068379	-4.0328	-0.0023041	-2.836	-0.0016203	571.3296607518439	79.111	0.56409	79.111	78.83	79.394	0					32	13	3	0	0	0	0.026606	1	8024	8024		44.377	0	1	1013900			45649	15150	37796	37819	49111	49111					0.08557372568861865
QKLPAAPLALE	11	Unmodified	_QKLPAAPLALE_					0	0	0		NF1|p.T1730P|1|0.38|ENSG00000196712|chr17:31326172-31326172|A/C|missense_variant	NF1|p.T1730P|1|0.38|ENSG00000196712|chr17:31326172-31326172|A/C|missense_variant	NF1|p.T1730P|1|0.38|ENSG00000196712|chr17:31326172-31326172|A/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8431396484375	2	575.845156	1149.67576	-2.1491	-0.0012375	-1.4619	-0.00084184	-3.611	-0.0020794	575.8441928035448	141.47	4.0925	141.24	139.21	143.3	-0.22696					166	82	3	0	0	0	0.72466	1	14154	14154		19.997	1.6724	1	100260			45650	15427	37797	37820	49112	49112					0.10690847091291289
QKLQLRVPSV	10	Unmodified	_QKLQLRVPSV_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-SECPEP	OvCa9_classI_Rep3	3	585.3497314453125	2	584.364047	1166.71354	-1.4844	-0.0008674	0.80133	0.00046827	-0.68303	-0.00039914	584.3644469755179	73.737	0.89355	71.25	70.974	71.868	-2.4873					34	17	3	0	0	0	0.027147	1	3582	3582		10.265	3.0719	1	67474			45651	5173	37798	37821	49113	49113					0.1368535807673652
QKLQQKAR	8	Unmodified	_QKLQQKAR_					0	0	0		nc|ENSG00000152409|Q8N9B5-2|JMY;ENSG00000152409|ENST00000396137|JMY	nc|ENSG00000152409|Q8N9B5-2|JMY	nc|ENSG00000152409|Q8N9B5-2|JMY	MULTI-MSMS	OvCa99_classI_Rep5	1	500.3062744140625	2	500.306532	998.598512	-0.52322	-0.00026177	0.15274	7.6418E-05	-0.37047	-0.00018535	500.30648829365623	24.361	0.55019	24.361	24.188	24.738	0					24	10	3	0	0	0	0.56113	1	437	437		71.378	0	1	508570			45652	5620	37799	37822	49114	49114					0.09915673665602753
QKLRAQVRRLC	11	Unmodified	_QKLRAQVRRLC_					0	0	0		nc|ENSG00000126214|Q07866-8|KLC1;nc|ENSG00000126214|Q07866-2|KLC1;nc|ENSG00000126214|Q07866-3|KLC1;nc|ENSG00000126214|Q07866|KLC1;nc|ENSG00000126214|Q07866-7|KLC1;nc|ENSG00000126214|Q07866-5|KLC1;nc|ENSG00000126214|Q07866-10|KLC1;nc|ENSG00000126214|Q07866-6|KLC1;nc|ENSG00000126214|Q07866-4|KLC1;ENSG00000126214|ENST00000334553|KLC1;KLC1|p.T215Efs*65|1|0.11|ENSG00000126214|chr14:103662772-103662773|-/GAGACCCTGTCTCAGAAAAACAAGCAAT|frameshift_variant;ENST00000467906.5_1_6:43030654-43039600:+|nuORF	nc|ENSG00000126214|Q07866-8|KLC1	nc|ENSG00000126214|Q07866-8|KLC1	MULTI-MSMS	OvCa9_classI_Rep3	3	457.60797119140625	3	457.610228	1369.80886	-6.2055	-0.0028397	1.6375	0.00074934	-4.568	-0.0020904	457.6108688134911	157.03	3.4081	155.86	154.91	158.32	-1.1707					147	80	2	0	0	0	0.72472	1	13576	13576		19.263	7.3303	1	68588			45653	3768	37800	37823	49115	49115					0.13874387996156656
QKLRHPNTI	9	Unmodified	_QKLRHPNTI_					0	0	0		ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;TAOK2|p.N256Rfs*30|1|0.06|ENSG00000149930|chr16:29981875-29981876|-/GAGGTCTGCCTAAGCTCAGTGCTGTC|frameshift_variant;nc|ENSG00000149930|Q9UL54-2|TAOK2	ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-2|TAOK2	nc|ENSG00000149930|Q9UL54-2|TAOK2	MULTI-MSMS	OvCa99_classI_Rep5	1	553.8251342773438	2	553.825089	1105.63563	-0.1369	-7.5816E-05	-0.31632	-0.00017519	-0.45322	-0.000251	553.8249829774524	30.211	1.0873	30.211	30.036	31.124	0					38	21	2	0	0	0	0.64427	1	1170	1170		26.693	4.9906	1	1753000			45654	5493;15088	37801	37824	49116	49116					0.08703345211370106
QKLRQERKR	9	Unmodified	_QKLRQERKR_					0	0	0		nc|ENSG00000003402|O15519-4|CFLAR;nc|ENSG00000003402|O15519-15|CFLAR;nc|ENSG00000003402|O15519-6|CFLAR;nc|ENSG00000003402|O15519-8|CFLAR;nc|ENSG00000003402|O15519-5|CFLAR;ENSG00000003402|ENST00000309955|CFLAR	nc|ENSG00000003402|O15519-4|CFLAR	nc|ENSG00000003402|O15519-4|CFLAR	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.5883483886719	3	414.589822	1240.74764	0.16709	6.9273E-05	3.132	0.0012985	3.2991	0.0013678	414.5910419987451	22.515	1.3412	21.121	20.671	22.012	-1.3935					97	37	4	0	0	0	0.66262	1	340	340		24.519	4.5224	1	89288			45655	820	37802	37825	49117	49117					0.13689199288342024
QKLSFRPLHI	10	Unmodified	_QKLSFRPLHI_					0	0	0			REV__ENSG00000196900|ENST00000357147|TEX43	REV__ENSG00000196900|ENST00000357147|TEX43	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8687133789062	2	619.87204	1237.72953	-3.1194	-0.0019336	-1.2014	-0.00074472	-4.3208	-0.0026783	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.72319	1	14942	14942		27.882	0	1	806750	+		45656	22873	37803	37826	49118	49118					0.1201706431365892
QKLSPKKTG	9	Unmodified	_QKLSPKKTG_					0	0	0			REV__ENSG00000074657|ENST00000591808|ZNF532	REV__ENSG00000074657|ENST00000591808|ZNF532	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.96929931640625	2	493.803291	985.59203	-4.5465	-0.0022451	-2.8014	-0.0013833	-7.3479	-0.0036284	493.801776302	160.4	0.40099	160.17	159.98	160.38	-0.22696					11	7	2	0	0	0	0.027462	1	16331	16331		25.574	6.2141	1	13031	+		45657	16951	37804	37827	49119	49119					0.09865735714242874
QKLSPKKTG	9	Unmodified	_QKLSPKKTG_					0	0	0			REV__ENSG00000074657|ENST00000591808|ZNF532	REV__ENSG00000074657|ENST00000591808|ZNF532	MULTI-MATCH	OvCa9_classI_Rep3	3		2	493.803291	985.59203	-7.0254	-0.0034692	0.045947	2.2689E-05	-6.9795	-0.0034465	493.80310870228783	161.5	0.65819	160.13	159.79	160.45	-1.3692	-0.076876	0.0016348	NaN	25.574	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10321	+		45658	16951	37804	37827							0.09865735714242874
QKLSPKKTG	9	Unmodified	_QKLSPKKTG_					0	0	0			REV__ENSG00000074657|ENST00000591808|ZNF532	REV__ENSG00000074657|ENST00000591808|ZNF532	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	493.803291	985.59203	-6.3115	-0.0031167	-1.15	-0.00056789	-7.4616	-0.0036846	493.8024786284503	161.95	0.57843	160.32	160.14	160.72	-1.6239	0.1129	0.00045366	NaN	25.574	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19651	+		45659	16951	37804	37827							0.09865735714242874
QKLVDHLAL	9	Unmodified	_QKLVDHLAL_					0	0	0			REV__ENSG00000105072|ENST00000221671|C19orf44	REV__ENSG00000105072|ENST00000221671|C19orf44	MULTI-MSMS	OvCa9_classI_Rep3	3	518.8067016601562	2	518.811116	1035.60768	-0.049483	-2.5672E-05	-1.1441	-0.00059357	-1.1936	-0.00061924	518.8105741700431	88.52	3.827	86.389	85.803	89.63	-2.1309					168	75	5	0	0	0	0.51865	1	5462	5462		40.778	0.20554	1	8533700	+		45660	17698	37805	37828	49120	49120					0.09130022231261137
QKLYFLLVI	9	Unmodified	_QKLYFLLVI_					0	0	0		SETD2|p.E983Kfs*23|1|0.1|ENSG00000181555|chr3:47121689-47121689|C/-|frameshift_variant	SETD2|p.E983Kfs*23|1|0.1|ENSG00000181555|chr3:47121689-47121689|C/-|frameshift_variant	SETD2|p.E983Kfs*23|1|0.1|ENSG00000181555|chr3:47121689-47121689|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	568.8535766601562	2	568.857535	1135.70052	-7.0364	-0.0040027	-0.036741	-2.09E-05	-7.0732	-0.0040236	568.857375140279	161.4	1.8223	160.03	159.69	161.51	-1.3692					107	37	5	0	0	0	0.6653	1	14049	14049		24.203	3.2558	1	827460			45661	32813	37806	37829	49121	49121					0.1380952696465556
QKMIKGEVSSG	11	Unmodified	_QKMIKGEVSSG_					0	0	0		tr|A0A7D7A4D7|A0A7D7A4D7_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02640PE=3SV=1	tr|A0A7D7A4D7|A0A7D7A4D7_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02640PE=3SV=1	tr|A0A7D7A4D7|A0A7D7A4D7_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02640PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	582.30615234375	2	582.308081	1162.60161	-1.2245	-0.00071306	-3.6668	-0.0021352	-4.8913	-0.0028482	582.3058790740574	82.535	1.1714	79.852	79.489	80.66	-2.6829					54	23	3	0	0	0	0.69424	1	6827	6827		31.634	0.10446	1	498540			45662	36141	37807	37830	49122	49122					0.026811359374505628
QKMMMKRSYEY	11	Unmodified	_QKMMMKRSYEY_					0	0	0			REV__ENSG00000120329|ENST00000239451|SLC25A2	REV__ENSG00000120329|ENST00000239451|SLC25A2	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.903076171875	3	498.90158	1493.68291	-1.013	-0.00050538	2.0213	0.0010084	1.0083	0.00050306	498.9026352686641	70.981	1.4041	67.524	67.251	68.656	-3.4563					91	28	4	0	0	0	0.71321	1	5393	5393		25.126	0.89417	1	841790	+		45663	18497	37808	37831	49123	49123					-0.04418247686430732
QKMNLEEELDE	11	Unmodified	_QKMNLEEELDE_					0	0	0		nc|ENSG00000044459|Q9NXG0|CNTLN;ENSG00000044459|ENST00000380647|CNTLN;CNTLN|p.K1206Sfs*15|1|0.3|ENSG00000044459|chr9:17466063-17466063|A/-|frameshift_variant	nc|ENSG00000044459|Q9NXG0|CNTLN	nc|ENSG00000044459|Q9NXG0|CNTLN	MULTI-MSMS	OvCa99_classI_Rep5	1	459.8789367675781	3	459.878263	1376.61296	1.9166	0.00088142	-1.2983	-0.00059706	0.61834	0.00028436	459.8775121645	101.2	0.58565	101.2	100.98	101.57	0					35	13	5	0	0	0	0.65267	1	11246	11246		39.873	0	1	809560			45664	1133	37809	37832	49124	49124					-0.06028131549714999
QKMQKQLRSI	10	Unmodified	_QKMQKQLRSI_					0	0	0		tr|A0A553SKA7|A0A553SKA7_NIACIRibonucleaseGOS=NialliacirculansOX=1397GN=CEQ21_18440PE=3SV=1	tr|A0A553SKA7|A0A553SKA7_NIACIRibonucleaseGOS=NialliacirculansOX=1397GN=CEQ21_18440PE=3SV=1	tr|A0A553SKA7|A0A553SKA7_NIACIRibonucleaseGOS=NialliacirculansOX=1397GN=CEQ21_18440PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	420.2413330078125	3	420.579935	1258.71798	-0.62215	-0.00026166	0.96039	0.00040392	0.33824	0.00014226	420.58025630625286	58.767	1.2952	55.375	55.101	56.396	-3.392					41	25	2	0	0	0	0.026942	1	3949	3949		20.03	10.384	1	96459			45665	33596	37810	37833	49125	49125					0.09896499228011635
QKMVHDIKN	9	Unmodified	_QKMVHDIKN_					0	0	0		BLNK|p.G230Qfs*44|1|0.04|ENSG00000095585|chr10:96209896-96209897|-/CCTG|frameshift_variant;nc|ENSG00000095585|Q8WV28-3|BLNK;nc|ENSG00000095585|Q8WV28-2|BLNK;ENSG00000095585|ENST00000224337|BLNK	BLNK|p.G230Qfs*44|1|0.04|ENSG00000095585|chr10:96209896-96209897|-/CCTG|frameshift_variant	BLNK|p.G230Qfs*44|1|0.04|ENSG00000095585|chr10:96209896-96209897|-/CCTG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	556.7951049804688	2	556.797683	1111.58081	-0.65379	-0.00036403	-2.6702	-0.0014867	-3.324	-0.0018508	556.7958319799014	114.91	1.3325	113.85	113.55	114.88	-1.055					67	26	4	0	0	0	0.48047	1	8510	8510		44.377	0.26039	1	182980			45666	151	37811	37834	49126	49126					0.02948590348455582
QKMVYYGKP	9	Unmodified	_QKMVYYGKP_					0	0	0		ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.8484497070312	2	557.291702	1112.56885	2.9015	0.001617	1.0038	0.0005594	3.9053	0.0021764	557.7936563739632	86.289	0.48423	86.289	86.153	86.637	0					14	11	2	0	0	0	0.027462	1	9074	9074		16.473	0	1	543250			45667	6178	37812	37835	49127	49127					0.01706973605246276
QKNENYQIVL	10	Unmodified	_QKNENYQIVL_					0	0	0			REV__ENSG00000140836|ENST00000268489|ZFHX3	REV__ENSG00000140836|ENST00000268489|ZFHX3	MULTI-MSMS	OvCa9_classI_Rep3	3	624.8344116210938	2	624.832777	1247.651	-0.22894	-0.00014305	0.12143	7.5875E-05	-0.10751	-6.7177E-05	624.832799150308	93.664	2.1214	91.702	91.378	93.499	-1.9617					124	41	5	0	0	0	0.39718	1	6038	6038		68.846	5.4197	1	1089200	+		45668	19702	37813	37836	49128	49128					0.03708167217905611
QKNITYAVA	9	Unmodified	_QKNITYAVA_					0	0	0		tr|A0A553SNU0|A0A553SNU0_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_25180PE=4SV=1	tr|A0A553SNU0|A0A553SNU0_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_25180PE=4SV=1	tr|A0A553SNU0|A0A553SNU0_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_25180PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.2773132324219	2	504.279649	1006.54475	0.90021	0.00045396	-1.2381	-0.00062436	-0.33791	-0.0001704	504.2790972619047	85.965	1.1819	83.319	82.61	83.792	-2.6463					30	23	2	0	0	0	0.027402	1	7243	7243		66.429	7.6473	1	24011			45669	33961	37814	37837	49129	49129					0.041734564432204024
QKNKEKLTT	9	Unmodified	_QKNKEKLTT_					0	0	0		PLCL1|p.S290N|1|0.09|ENSG00000115896|chr2:198084386-198084386|G/A|missense_variant	PLCL1|p.S290N|1|0.09|ENSG00000115896|chr2:198084386-198084386|G/A|missense_variant	PLCL1|p.S290N|1|0.09|ENSG00000115896|chr2:198084386-198084386|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3159790039062	2	545.316763	1088.61897	-2.8527	-0.0015556	2.7212	0.0014839	-0.13151	-7.1714E-05	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.64427	1	11946	11946		26.693	2.4902	1	337600			45670	15507	37815	37838	49130	49130					0.07820799534761136
QKNKGNIDPVF	11	Unmodified	_QKNKGNIDPVF_					0	0	0			REV__tr|A0A7D7A121|A0A7D7A121_9CLOTPenicillin-bindingprotein2OS=ClostridiumintestinaleOX=36845GN=HZF06_09905PE=4SV=1	REV__tr|A0A7D7A121|A0A7D7A121_9CLOTPenicillin-bindingprotein2OS=ClostridiumintestinaleOX=36845GN=HZF06_09905PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	420.2411193847656	3	420.562938	1258.66699	-0.12311	-5.1775E-05	0.32486	0.00013663	0.20175	8.485E-05	420.5626898628699	55.82	0.37268	55.82	55.559	55.932	0					16	8	3	0	0	0	0.025767	1	4600	4600		30.569	12.307	1	78769	+		45671	32466	37816	37839	49131	49131					0.04799873454794579
QKNLEELKI	9	Unmodified	_QKNLEELKI_					0	0	0		nc|ENSG00000115355|Q3V6T2-5|CCDC88A;nc|ENSG00000115355|Q3V6T2-4|CCDC88A;nc|ENSG00000115355|Q3V6T2-2|CCDC88A;nc|ENSG00000115355|Q3V6T2-3|CCDC88A;ENSG00000115355|ENST00000436346|CCDC88A	nc|ENSG00000115355|Q3V6T2-5|CCDC88A	nc|ENSG00000115355|Q3V6T2-5|CCDC88A	MULTI-MSMS	OvCa99_classI_Rep5	1	557.8287353515625	2	557.826963	1113.63937	0.58527	0.00032648	-1.0941	-0.00061031	-0.50881	-0.00028383	557.826283893935	57.788	0.93189	57.788	57.18	58.112	0					39	13	4	0	0	0	0.11471	1	4865	4865		93.195	5.499	1	4165500			45672	3089	37817	37840	49132	49132					0.08709970194558991
QKNLKTGV	8	Unmodified	_QKNLKTGV_					0	0	0			REV__ENSG00000140905|ENST00000315467|GCSH	REV__ENSG00000140905|ENST00000315467|GCSH	MSMS	OvCa99_classI_Rep5	1	444.2720947265625	2	444.269084	886.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.84	1	113.84	113.34	114.34	0								0	0	0	0.075681	1	12983	12983		120.62	0	1		+		45673	19705	37818	37841	49133	49133					0.07581491134385487
QKNLPYTLL	9	Unmodified	_QKNLPYTLL_					0	0	0		ENST00000203630.9_2_12:6857197-6857296:-|nuORF	ENST00000203630.9_2_12:6857197-6857296:-|nuORF	ENST00000203630.9_2_12:6857197-6857296:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3162841796875	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.56889	1	14422	14422		35.618	7.736	1	202430			45674	9648	37819	37842	49134	49134					0.08222889028479585
QKNLQKMP	8	Unmodified	_QKNLQKMP_					0	0	0			REV__ENST00000477171.1_1_3:151962178-151962214:+|nuORF	REV__ENST00000477171.1_1_3:151962178-151962214:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	493.7759094238281	2	493.776219	985.537886	-0.77842	-0.00038437	0.82214	0.00040595	0.043719	2.1588E-05	493.7764462797835	25.293	1.3523	25.293	24.99	26.342	0					58	26	4	0	0	0	0.73626	1	535	535		33.516	1.5607	1	168290	+		45675	26383	37820	37843	49135	49135					0.0445382029100756
QKNLSIVKR	9	Unmodified	_QKNLSIVKR_					0	0	0			REV__ENSG00000125633|ENST00000376300|CCDC93	REV__ENSG00000125633|ENST00000376300|CCDC93	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.3269653320312	2	543.343115	1084.67168	-0.5939	-0.00032269	4.3994	0.0023904	3.8055	0.0020677	543.3458615442015	61.685	0.41111	61.685	61.542	61.953	0					11	9	2	0	0	0	0.027462	1	5483	5483		23.042	5.6775	1	237140	+		45676	18733	37821	37844	49136	49136					0.1327280238822368
QKNSLKKW	8	Unmodified	_QKNSLKKW_					0	0	0		tr|A0A553SKC4|A0A553SKC4_NIACIG5domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18330PE=4SV=1	tr|A0A553SKC4|A0A553SKC4_NIACIG5domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18330PE=4SV=1	tr|A0A553SKC4|A0A553SKC4_NIACIG5domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18330PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	516.30322265625	2	516.303458	1030.59236	-1.364	-0.00070426	0.62015	0.00032019	-0.7439	-0.00038408	516.3037096883031	61.9	2.366	59.14	58.568	60.934	-2.7593					127	45	4	0	0	0	0.35163	1	4601	4601		97.473	6.696	1	1077700			45677	33600	37822	37845	49137	49137					0.07829155434069435
QKNVSITALR	10	Unmodified	_QKNVSITALR_					0	0	0			REV__ENST00000503240.5_1_5:148742189-148742453:+|nuORF	REV__ENST00000503240.5_1_5:148742189-148742453:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	565.3372192382812	2	565.33803	1128.66151	0.22784	0.0001288	-0.1239	-7.0043E-05	0.10394	5.8762E-05	565.3378052470453	22.297	0.47479	22.297	22.142	22.617	0					27	10	4	0	0	0	0.75313	1	213	213		24.519	0	1	376830	+		45678	19988	37823	37846	49138	49138					0.10232194662967231
QKPILVHTI	9	Unmodified	_QKPILVHTI_					0	0	0			REV__ENST00000486458.1_1_2:74077502-74087672:+|nuORF	REV__ENST00000486458.1_1_2:74077502-74087672:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	524.8285522460938	2	524.829309	1047.64407	-4.3888	-0.0023034	0.2202	0.00011557	-4.1686	-0.0021878	524.8292785030237	156.45	1.4045	156.23	155.89	157.3	-0.22696					98	36	4	0	0	0	0.62352	1	15895	15895		29.15	2.4566	1	556080	+		45679	18682	37824	37847	49139	49139					0.12214899127980061
QKPKKIVN	8	Unmodified	_QKPKKIVN_					0	0	0		ENSG00000163815|ENST00000296130|CLEC3B	ENSG00000163815|ENST00000296130|CLEC3B	ENSG00000163815|ENST00000296130|CLEC3B	MULTI-MSMS	OvCa9_classI_Rep2	2	477.80865478515625	2	477.808377	953.6022	-2.2806	-0.0010897	2.086	0.00099673	-0.19457	-9.2967E-05	477.80923760882655	37.498	1.0346	34.788	34.534	35.568	-2.7097					41	20	3	0	0	0	0.73626	1	1705	1705		33.516	3.0119	1	138380			45680	6364	37825	37848	49140	49140					0.12354343439471904
QKPKVVKGR	9	Unmodified	_QKPKVVKGR_					0	0	0		ENSG00000109063|ENST00000583535|MYH3;MYH3|p.E1555Lfs*9|1|0.03|ENSG00000109063|chr17:10632770-10632771|-/CTCGGGGAGCAGAATGTGCACCAGG|frameshift_variant	ENSG00000109063|ENST00000583535|MYH3	ENSG00000109063|ENST00000583535|MYH3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.3016967773438	2	520.340375	1038.6662	-0.62642	-0.00032595	3.6989	0.0019247	3.0725	0.0015987	520.3420151288449	101.89	0.93498	99.68	99.359	100.29	-2.2116					26	17	2	0	0	0	0.027462	1	9150	9150		23.042	8.1776	1	23403			45681	2693	37826	37849	49141	49141					0.14841123596420402
QKPMQDETL	9	Unmodified	_QKPMQDETL_					0	0	0			REV__tr|A0A7D6VY19|A0A7D6VY19_9CLOTtryptophansynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14130PE=3SV=1	REV__tr|A0A7D6VY19|A0A7D6VY19_9CLOTtryptophansynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14130PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	545.2671508789062	2	545.265881	1088.51721	0.14669	7.9983E-05	2.8246	0.0015402	2.9713	0.0016202	545.2671665559722	114.38	1.4253	114.38	113.92	115.35	0					81	30	5	0	0	0	0.3076	1	13059	13059		62.107	1.1355	1	2213400	+		45682	31803	37827	37850	49142	49142					-0.02350814879309837
QKPRRLAAPAS	11	Unmodified	_QKPRRLAAPAS_					0	0	0		nc|ENSG00000038532|Q2KHT3-2|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	nc|ENSG00000038532|Q2KHT3-2|CLEC16A	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8572998046875	2	597.856921	1193.69929	-2.7036	-0.0016164	1.7084	0.0010214	-0.99524	-0.00059501	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.70518	1	12807	12807		27.882	8.7787	1	591030			45683	14868	37828	37851	49143	49143					0.11018705648461946
QKPSLSPLVLE	11	Unmodified	_QKPSLSPLVLE_					0	0	0		ENSG00000152217|ENST00000649279|SETBP1	ENSG00000152217|ENST00000649279|SETBP1	ENSG00000152217|ENST00000649279|SETBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	606.3580932617188	2	605.855721	1209.69689	2.024	0.0012263	0.55951	0.00033898	2.5835	0.0015652	605.8559671641736	134.59	1.397	134.59	134.29	135.69	0					68	30	3	0	0	0	0.68021	1	15703	15703		36.447	5.8779	1	3282600			45684	5611	37829	37852	49144	49144					0.10042812400160983
QKPSPDVLL	9	Unmodified	_QKPSPDVLL_					0	0	0		tr|A0A553SNY5|A0A553SNY5_NIACINodBhomologydomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_25250PE=4SV=1	tr|A0A553SNY5|A0A553SNY5_NIACINodBhomologydomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_25250PE=4SV=1	tr|A0A553SNY5|A0A553SNY5_NIACINodBhomologydomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_25250PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.7895202636719	2	498.78985	995.565146	-0.82368	-0.00041084	0.20105	0.00010028	-0.62263	-0.00031056	498.78992392916325	116.11	3.0188	115.07	114.6	117.62	-1.0414					179	60	5	0	0	0	0.16524	1	8710	8710		82.305	2.854	1	2745900			45685	33980	37830	37853	49145	49145					0.06718627103043673
QKPTIIKTI	9	Unmodified	_QKPTIIKTI_					0	0	0		tr|A0A553SF44|A0A553SF44_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_08200PE=4SV=1	tr|A0A553SF44|A0A553SF44_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_08200PE=4SV=1	tr|A0A553SF44|A0A553SF44_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_08200PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.2831420898438	2	521.336967	1040.65938	-0.34774	-0.00018129	-1.4742	-0.00076856	-1.822	-0.00094985	521.3359351886097	68.966	1.2945	66.346	66.068	67.362	-2.6203					50	25	3	0	0	0	0.027462	1	5562	5562		32.812	3.6629	1	95482			45686	32989	37831	37854	49146	49146					0.14067765925187814
QKPTKIKN	8	Unmodified	_QKPTKIKN_					0	0	0			REV__ENSG00000122012|ENST00000502798|SV2C	REV__ENSG00000122012|ENST00000502798|SV2C	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.2816467285156	2	478.798009	955.581465	0.20845	9.9806E-05	-0.83206	-0.00039839	-0.62361	-0.00029858	478.7973835450333	81.461	0.77026	79.812	79.564	80.334	-1.6485					28	14	3	0	0	0	0.028476	1	6976	6976		66.429	15.094	1	57079	+		45687	18573	37832	37855	49147	49147					0.10189753059785289
QKPTKIKN	8	Unmodified	_QKPTKIKN_					0	0	0			REV__ENSG00000122012|ENST00000502798|SV2C	REV__ENSG00000122012|ENST00000502798|SV2C	MULTI-MATCH	OvCa99_classI_Rep5	1		2	478.798009	955.581465	1.8233	0.00087301	0.69152	0.0003311	2.5148	0.0012041	478.7982454023561	79.476	0.38937	79.476	79.352	79.741	0	-0.28705	0.0012837	NaN	66.429	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	390390	+		45688	18573	37832	37855							0.10189753059785289
QKQIKSQQE	9	Unmodified	_QKQIKSQQE_					0	0	0			REV__ENSG00000167548|ENST00000301067|KMT2D	REV__ENSG00000167548|ENST00000301067|KMT2D	MULTI-MSMS	OvCa99_classI_Rep5	1	558.80419921875	2	558.80402	1115.59349	-0.38336	-0.00021422	0.19228	0.00010745	-0.19107	-0.00010677	558.8040136187144	26.518	0.39954	26.518	26.392	26.792	0					18	7	4	0	0	0	0.46356	1	701	701		45.972	1.5951	1	198510	+		45689	21287	37833	37856	49148	49148					0.04031325012351772
QKQKAIKVS	9	Unmodified	_QKQKAIKVS_					0	0	0			REV__tr|A0A553SIJ0|A0A553SIJ0_NIACIPeptidaseS8OS=NialliacirculansOX=1397GN=CEQ21_14910PE=3SV=1	REV__tr|A0A553SIJ0|A0A553SIJ0_NIACIPeptidaseS8OS=NialliacirculansOX=1397GN=CEQ21_14910PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.3036499023438	2	515.324391	1028.63423	-0.4969	-0.00025606	-1.1768	-0.00060643	-1.6737	-0.00086249	515.3241916302302	62.649	0.63231	59.191	58.962	59.594	-3.4577					20	12	3	0	0	0	0.027462	1	4364	4364		35.618	5.3006	1	31048	+		45690	29895	37834	37857	49149	49149					0.12105711122626417
QKQSPIMEP	9	Unmodified	_QKQSPIMEP_					0	0	0			REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	MULTI-MSMS	OvCa99_classI_Rep5	1	529.2739868164062	2	529.270967	1056.52738	0.84259	0.00044596	1.5913	0.00084225	2.4339	0.0012882	529.2715497536439	157.42	0.55392	157.42	157.2	157.75	0					16	10	2	0	0	0	0.35444	1	18455	18455		56.721	0	1	62726	+		45691	21336	37835	37858	49150	49150					0.0013779284593056218
QKRDILKL	8	Unmodified	_QKRDILKL_					0	0	0			REV__tr|A0A7D6ZVN7|A0A7D6ZVN7_9CLOTDMTfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_15650PE=3SV=1	REV__tr|A0A7D6ZVN7|A0A7D6ZVN7_9CLOTDMTfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_15650PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	507.32574462890625	2	507.326934	1012.63931	0.016369	8.3042E-06	-0.049487	-2.5106E-05	-0.033118	-1.6802E-05	507.32675165090876	70.48	1.8565	67.76	67.306	69.162	-2.7196					76	36	4	0	0	0	0.48084	1	3225	3225		79.451	7.5735	1	255520	+		45692	32258	37836	37859	49151	49151					0.1335001498522388
QKREQRLRK	9	Unmodified	_QKREQRLRK_					0	0	0		ENST00000476231.1_1_1:25558504-25558958:-|nuORF;nc|ENSG00000117614|O95926-2|SYF2;ENSG00000117614|ENST00000236273|SYF2	ENST00000476231.1_1_1:25558504-25558958:-|nuORF	ENST00000476231.1_1_1:25558504-25558958:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	414.5909423828125	3	414.589822	1240.74764	-0.3176	-0.00013168	3.6928	0.001531	3.3752	0.0013993	414.59131292590723	33.401	1.2917	30.691	30.42	31.712	-2.7097					57	25	3	0	0	0	0.40818	1	1188	1188		51.193	1.1592	1	132160			45693	3267	37837	37860	49152	49152					0.13689199288342024
QKRKAKGT	8	Unmodified	_QKRKAKGT_					0	0	0		nc|ENSG00000145901|Q15025-7|TNIP1	nc|ENSG00000145901|Q15025-7|TNIP1	nc|ENSG00000145901|Q15025-7|TNIP1	MULTI-MSMS	OvCa9_classI_Rep2	2	458.7877502441406	2	458.787976	915.561398	-2.0925	-0.00096003	2.0092	0.00092177	-0.083388	-3.8258E-05	458.7887619770069	147.55	1.9467	147.32	146.82	148.77	-0.22697					104	38	4	0	0	0	0.74971	1	14912	14912		26.796	0	1	613710			45694	15078	37838	37861	49153	49153					0.10024002119860143
QKRKKPTV	8	Unmodified	_QKRKKPTV_					0	0	0		tr|A0A553SJD4|A0A553SJD4_NIACIUndecaprenyl-diphosphataseOS=NialliacirculansOX=1397GN=uppPPE=3SV=1	tr|A0A553SJD4|A0A553SJD4_NIACIUndecaprenyl-diphosphataseOS=NialliacirculansOX=1397GN=uppPPE=3SV=1	tr|A0A553SJD4|A0A553SJD4_NIACIUndecaprenyl-diphosphataseOS=NialliacirculansOX=1397GN=uppPPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	492.81927490234375	2	492.819276	983.623999	-1.0524	-0.00051866	0.60887	0.00030006	-0.44358	-0.0002186	492.81937696825383	61.985	2.6287	59.225	58.882	61.511	-2.7593					139	50	4	0	0	0	0.73626	1	4699	4699		33.516	0	1	798600			45695	33493	37839	37862	49154	49154					0.1315314818804154
QKSFVGQLKL	10	Unmodified	_QKSFVGQLKL_					0	0	0			REV__KANSL1|p.Q968Sfs*46|1|0.43|ENSG00000120071|chr17:46032235-46032235|G/-|frameshift_variant	REV__KANSL1|p.Q968Sfs*46|1|0.43|ENSG00000120071|chr17:46032235-46032235|G/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	574.347900390625	2	574.345323	1146.67609	-0.5314	-0.00030521	0.72267	0.00041506	0.19127	0.00010986	574.3458026494483	53.091	0.55928	53.091	52.873	53.432	0					37	12	4	0	0	0	0.34811	1	4217	4217		75.043	0	1	2018700	+		45696	18483	37840	37863	49155	49155					0.10862266811136578
QKSLQVIGR	9	Unmodified	_QKSLQVIGR_					0	0	0			REV__tr|A0A553SRZ0|A0A553SRZ0_NIACILipidIIflippaseAmjOS=NialliacirculansOX=1397GN=amjPE=3SV=1	REV__tr|A0A553SRZ0|A0A553SRZ0_NIACILipidIIflippaseAmjOS=NialliacirculansOX=1397GN=amjPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	514.813720703125	2	514.81419	1027.61383	2.5746	0.0013254	-2.6896	-0.0013847	-0.11509	-5.9251E-05	514.8126670332618	27.295	1.0989	24.585	24.394	25.493	-2.7097					55	24	4	0	0	0	0.19758	1	445	445		76.774	7.1465	1	264850	+		45697	30779	37841	37864	49156	49156					0.10112540462819197
QKSVSFILRYL	11	Unmodified	_QKSVSFILRYL_					0	0	0			REV__ENSG00000164935|ENST00000297581|DCSTAMP	REV__ENSG00000164935|ENST00000297581|DCSTAMP	MSMS	OvCa9_classI_Rep2	2	451.93304443359375	3	451.934484	1352.78162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.862	1	99.031	98.531	99.531	-0.83051								0	0	0	0.19474	1	9115	9115		23.378	4.8469	1		+		45698	21040	37842	37865	49157	49157					0.11934182936761317
QKSYSAKVSFV	11	Unmodified	_QKSYSAKVSFV_					0	0	0			REV__tr|A0A7D6ZPK5|A0A7D6ZPK5_9CLOTSulfiteexporterTauE/SafEfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20790PE=4SV=1	REV__tr|A0A7D6ZPK5|A0A7D6ZPK5_9CLOTSulfiteexporterTauE/SafEfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20790PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	622.3387451171875	2	622.337695	1242.66084	0.46643	0.00029028	-0.38929	-0.00024227	0.077142	4.8008E-05	622.3373220061544	159.06	1.8648	159.06	158.69	160.56	0					99	37	4	0	0	0	0.66495	1	18668	18668		38.754	7.2238	1	3450400	+		45699	32138	37843	37866	49158	49158					0.0492135522326862
QKTEARHILTL	11	Unmodified	_QKTEARHILTL_					0	0	0		nc|ENSG00000164329|Q6PIY7-2|TENT2;ENSG00000164329|ENST00000453514|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	nc|ENSG00000164329|Q6PIY7-2|TENT2	MULTI-MSMS	OvCa9_classI_Rep4_	4	437.25494384765625	3	437.257738	1308.75138	-4.4342	-0.0019389	4.0137	0.001755	-0.42051	-0.00018387	437.25973714339534	155.69	1.3717	154.2	153.17	154.54	-1.4911					70	36	3	0	0	0	0.72466	1	15407	15407		20.03	4.6974	1	33382			45700	6448	37844	37867	49159	49159					0.10935824271564343
QKTEESKVPE	10	Unmodified	_QKTEESKVPE_					0	0	0		ENSG00000273136|ENST00000620612|NBPF26	ENSG00000273136|ENST00000620612|NBPF26	ENSG00000273136|ENST00000620612|NBPF26	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.7758178710938	2	587.801143	1173.58773	-0.9471	-0.0005567	0.8489	0.00049899	-0.098192	-5.7717E-05	587.8019611352345	36.507	0.18138	36.507	36.351	36.532	0					8	3	3	0	0	0	0.026968	1	1912	1912		44.377	0	1	122980			45701	9555	37845	37868	49160	49160					0.007881817099814725
QKTNELHI	8	Unmodified	_QKTNELHI_					0	0	0			REV__tr|A0A553SG00|A0A553SG00_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09845PE=4SV=1	REV__tr|A0A553SG00|A0A553SG00_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09845PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	491.7696838378906	2	491.769448	981.524344	-0.88478	-0.00043511	0.42611	0.00020955	-0.45867	-0.00022556	491.7695336463169	39.875	0.80977	39.875	39.669	40.479	0					39	17	3	0	0	0	0.40148	1	2377	2377		87.754	8.3033	1	766340	+		45702	29641	37846	37869	49161	49161					0.03284285783422547
QKTNELHI	8	Unmodified	_QKTNELHI_					0	0	0			REV__tr|A0A553SG00|A0A553SG00_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09845PE=4SV=1	REV__tr|A0A553SG00|A0A553SG00_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09845PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	491.769448	981.524344	-0.88478	-0.00043511	0.42611	0.00020955	-0.45867	-0.00022556	491.7695336463169	39.875	0.80977	39.875	39.669	40.479	0	0	0	NaN	87.754	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	766340	+		45703	29641	37846	37869							0.03284285783422547
QKTWFISF	8	Unmodified	_QKTWFISF_					0	0	0			REV__ENSG00000165188|ENST00000489339|RNF183	REV__ENSG00000165188|ENST00000489339|RNF183	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7528686523438	2	528.779285	1055.54402	1.8707	0.00098921	-1.9559	-0.0010343	-0.085187	-4.5045E-05	528.7779033778585	98.702	0.432	98.702	98.332	98.764	0					17	9	3	0	0	0	0.028476	1	10847	10847		31.955	7.7521	1	485160	+		45704	16118	37847	37870	49162	49162					0.01846661794161264
QKVLQLYPN	9	Unmodified	_QKVLQLYPN_					0	0	0		ENSG00000004478|ENST00000001008|FKBP4;ENST00000507284.2_1_4:119114562-119114895:-|nuORF	ENSG00000004478|ENST00000001008|FKBP4	ENSG00000004478|ENST00000001008|FKBP4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.7938842773438	2	551.816399	1101.61824	-0.6225	-0.00034351	2.5723	0.0014194	1.9498	0.0010759	551.817554926523	66.338	0.87853	62.848	62.564	63.442	-3.4902					38	17	3	0	0	0	0.027462	1	4847	4847		20.947	0	1	125030			45705	829	37848	37871	49163	49163					0.07150004885693306
QKVLQVAHLVF	11	Unmodified	_QKVLQVAHLVF_					0	0	0			REV__nc|ENSG00000134900|P29144|TPP2	REV__nc|ENSG00000134900|P29144|TPP2	MULTI-MSMS	OvCa9_classI_Rep3	3	641.3853759765625	2	641.387522	1280.76049	-6.9547	-0.0044607	2.7235	0.0017468	-4.2313	-0.0027139	641.3889588117827	161.52	1.4957	160.15	159.74	161.23	-1.3692					63	30	3	0	0	0	0.72545	1	14053	14053		9.7057	0	1	83087	+		45706	19242	37849	37872	49164	49164					0.131342176278622
QKVTQNLTL	9	Unmodified	_QKVTQNLTL_					0	0	0		CON__Q95121	CON__Q95121	CON__Q95121	MULTI-MSMS	OvCa99_classI_Rep5	1	522.7972412109375	2	522.806031	1043.59751	1.5694	0.00082051	1.0958	0.00057288	2.6652	0.0013934	522.8065504400671	91.996	0.63406	91.996	91.582	92.216	0					31	14	3	0	0	0	0.27001	1	9925	9925		66.429	4.3219	1	1596500		+	45707	662	37850	37873	49165	49165					0.07745414506052839
QKVVEKGAI	9	Unmodified	_QKVVEKGAI_					0	0	0		ENSG00000176903|ENST00000316836|PNMA1	ENSG00000176903|ENST00000316836|PNMA1	ENSG00000176903|ENST00000316836|PNMA1	MULTI-MSMS	OvCa99_classI_Rep5	1	486.2978820800781	2	486.297842	970.581131	-0.4236	-0.00020599	0.24209	0.00011773	-0.1815	-8.8265E-05	486.29786838396353	48.768	0.4875	48.768	48.544	49.031	0					27	10	3	0	0	0	0.2422	1	3599	3599		69.628	5.4204	1	1204300			45708	7636	37851	37874	49166	49166					0.09466333339958055
QKVVRSKELL	10	Unmodified	_QKVVRSKELL_					0	0	0			REV__nc|ENSG00000128641|O43795-2|MYO1B	REV__nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	OvCa9_classI_Rep2	2	600.3759155273438	2	600.377155	1198.73976	2.4727	0.0014845	-2.4024	-0.0014424	0.070273	4.219E-05	600.3755689581569	26.426	0.84442	23.716	23.517	24.362	-2.7097					46	24	3	0	0	0	0.79213	1	396	396		19.997	0	1	69653	+		45709	18865	37852	37875	49167	49167					0.14833627248231096
QLAALRLA	8	Unmodified	_QLAALRLA_					0	0	0			REV__ENSG00000169933|ENST00000675598|FRMPD4	REV__ENSG00000169933|ENST00000675598|FRMPD4	MULTI-SECPEP	OvCa99_classI_Rep5	1	428.7615051269531	2	428.27417	854.533787	1.1585	0.00049616	1.1967	0.00051251	2.3552	0.0010087	428.27450135518944	81.512	0.6067	81.512	81.248	81.854	0					21	14	2	0	0	0	0.028476	1	8420	8420		25.45	0	1	419600	+		45710	21500	37853	37876	49168	49168					0.1007009885959178
QLAAQQQALQ	10	Unmodified	_QLAAQQQALQ_					0	0	0			REV__ENSG00000182827|ENST00000366812|ACBD3	REV__ENSG00000182827|ENST00000366812|ACBD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.7509765625	2	549.798737	1097.58292	1.0719	0.00058931	-1.4861	-0.00081707	-0.41427	-0.00022777	550.3017174721003	144.33	0.29608	144.33	144.11	144.4	0					9	5	2	0	0	0	0.026849	1	16863	16863		40.778	7.9657	1	19309	+		45711	22320	37854	37877	49169	49169					0.03803342357900874
QLAAREAK	8	Unmodified	_QLAAREAK_					0	0	0			REV__ENST00000334176.3_1_19:33166647-33167097:+|nuORF	REV__ENST00000334176.3_1_19:33166647-33167097:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	444.22869873046875	2	443.758884	885.503215	-0.48426	-0.00021489	1.6614	0.00073726	1.1771	0.00052237	443.7592115877979	48.345	0.56693	45.237	45.09	45.657	-3.1077					13	10	2	0	0	0	0.028476	1	2655	2655		30.504	1.3541	1	18161	+		45712	24560	37855	37878	49170	49170					0.05588320474566899
QLAFAGKKEH	10	Unmodified	_QLAFAGKKEH_					0	0	0		nc|ENSG00000124207|P55060-4|CSE1L;nc|ENSG00000124207|P55060-3|CSE1L;ENSG00000124207|ENST00000262982|CSE1L;ENST00000469700.1_1_20:47707305-47712721:+|nuORF	nc|ENSG00000124207|P55060-4|CSE1L	nc|ENSG00000124207|P55060-4|CSE1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.348388671875	2	564.811648	1127.60874	-0.29985	-0.00016936	-4.104	-0.002318	-4.4039	-0.0024873	564.8094015858926	28.764	0.20033	28.764	28.638	28.838	0					5	3	2	0	0	0	0.026548	1	971	971		63.534	13.998	1	18608			45713	3633	37856	37879	49171	49171					0.050042366001889604
QLAGLAILLE	10	Unmodified	_QLAGLAILLE_					0	0	0			REV__ENSG00000150990|ENST00000308736|DHX37	REV__ENSG00000150990|ENST00000308736|DHX37	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.2683715820312	2	520.82115	1039.62775	1.3879	0.00072284	0.52652	0.00027422	1.9144	0.00099706	520.8212119342456	101.23	0.58609	101.23	100.94	101.53	0					19	13	3	0	0	0	0.026688	1	11255	11255		25.574	1.0549	1	244580	+		45714	20209	37857	37880	49172	49172					0.10951773171223067
QLAILARK	8	Unmodified	_QLAILARK_					0	0	0		tr|A0A553SSN0|A0A553SSN0_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03280PE=4SV=1	tr|A0A553SSN0|A0A553SSN0_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03280PE=4SV=1	tr|A0A553SSN0|A0A553SSN0_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03280PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.2416076660156	2	456.803094	911.591636	-0.36862	-0.00016839	0.52698	0.00024072	0.15836	7.2339E-05	456.8032206703441	59.064	0.26041	59.064	58.932	59.192	0					11	6	2	0	0	0	0.028476	1	5058	5058		12.207	0	1	478890			45715	34392	37858	37881	49173	49173					0.1323036078503037
QLAIPVSSL	9	Unmodified	_QLAIPVSSL_					0	0	0		ENSG00000027697|ENST00000367739|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	ENSG00000027697|ENST00000367739|IFNGR1	MULTI-MSMS	OvCa9_classI_Rep2	2	464.2792663574219	2	464.279118	926.543683	-0.16652	-7.7314E-05	-0.22585	-0.00010486	-0.39237	-0.00018217	464.2789154549464	86.388	1.8341	84.897	84.394	86.228	-1.4906					100	35	5	0	0	0	0.11471	1	7523	7523		93.195	2.5946	1	659960			45716	1055	37859	37882	49174	49174					0.07747242074333371
QLAKGEAVKL	10	Unmodified	_QLAKGEAVKL_					0	0	0			REV__CEP250|p.Q1415E|1|0.36|ENSG00000126001|chr20:35502612-35502612|C/G|missense_variant	REV__CEP250|p.Q1415E|1|0.36|ENSG00000126001|chr20:35502612-35502612|C/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8189086914062	2	528.824224	1055.63389	-0.4199	-0.00022205	0.12045	6.3699E-05	-0.29944	-0.00015835	528.824359284761	48.92	0.31281	48.92	48.762	49.075	0					10	6	2	0	0	0	0.026674	1	3606	3606		47.96	0.30219	1	79102	+		45717	15779	37860	37883	49175	49175					0.10830291402771763
QLAKGEAVKL	10	Unmodified	_QLAKGEAVKL_					0	0	0			REV__CEP250|p.Q1415E|1|0.36|ENSG00000126001|chr20:35502612-35502612|C/G|missense_variant	REV__CEP250|p.Q1415E|1|0.36|ENSG00000126001|chr20:35502612-35502612|C/G|missense_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	528.824224	1055.63389	-1.0923	-0.00057764	0.69502	0.00036754	-0.39729	-0.0002101	528.8243112291383	52.182	0.65823	48.974	48.742	49.4	-3.208	0.026749	8.5159E-05	NaN	47.96	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34775	+		45718	15779	37860	37883							0.10830291402771763
QLAKKEKTL	9	Unmodified	_QLAKKEKTL_					0	0	0			REV__nc|ENSG00000078814|A7E2Y1|MYH7B;REV__ENSG00000264424|ENST00000255381|MYH4	REV__ENSG00000264424|ENST00000255381|MYH4	MULTI-MSMS	OvCa9_classI_Rep3	3	530.333251953125	2	529.832049	1057.64954	0.017891	9.4794E-06	-1.2154	-0.00064396	-1.1975	-0.00063448	529.8337061971487	131.67	1.3911	130.54	130.24	131.63	-1.1249					78	27	4	0	0	0	0.64427	1	10503	10503		26.693	0	1	122000	+		45719	23581;17031	37861	37884	49176	49176					0.12302577919808755
QLALLETHLL	10	Unmodified	_QLALLETHLL_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54;nc|ENSG00000188596|Q96N23-2|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8424682617188	2	575.845156	1149.67576	-3.1773	-0.0018296	-0.077675	-4.4729E-05	-3.255	-0.0018744	575.8447773729116	141.87	3.8997	140.86	138.96	142.86	-1.0106					243	78	6	0	0	0	0.73378	1	11779	11779		26.693	1.1189	1	129610			45720	8482	37862	37885	49177	49177					0.10690847091291289
QLALLRLQ	8	Unmodified	_QLALLRLQ_					0	0	0			REV__ENSG00000133858|ENST00000378743|ZFC3H1	REV__ENSG00000133858|ENST00000378743|ZFC3H1	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.2643127441406	2	477.808377	953.6022	-1.2687	-0.00060619	1.0763	0.00051427	-0.19237	-9.1918E-05	477.8089027139825	61.018	1.1575	58.248	57.766	58.924	-2.7702					32	21	2	0	0	0	0.028476	1	4553	4553		18.324	0	1	18148	+		45721	19161	37863	37886	49178	49178					0.12354343439471904
QLAQHHALL	9	Unmodified	_QLAQHHALL_					0	0	0			REV__ENSG00000173404|ENST00000310227|INSM1	REV__ENSG00000173404|ENST00000310227|INSM1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.801025390625	2	515.793258	1029.57196	-0.018133	-9.3531E-06	-2.1937	-0.0011315	-2.2118	-0.0011409	515.7917829396107	64.922	0.72619	61.436	61.163	61.889	-3.4854					20	12	3	0	0	0	0.027462	1	4660	4660		55.504	10.973	1	242010	+		45722	21770	37864	37887	49179	49179					0.05835984774262215
QLAQHHALL	9	Unmodified	_QLAQHHALL_					0	0	0			REV__ENSG00000173404|ENST00000310227|INSM1	REV__ENSG00000173404|ENST00000310227|INSM1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.793258	1029.57196	-0.31283	-0.00016136	-0.065399	-3.3732E-05	-0.37823	-0.00019509	515.7924628475888	64.153	2.131	61.428	60.862	62.993	-2.7245	-0.004123	0.0009275	NaN	44.117	55	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117490	+		45723	21770	37864	37887							0.05835984774262215
QLAQLQQKLL	10	Unmodified	_QLAQLQQKLL_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-MSMS	OvCa9_classI_Rep3	3	591.8639526367188	2	591.86388	1181.71321	0.72408	0.00042856	0.6408	0.00037927	1.3649	0.00080783	591.8641978183085	65.182	2.2339	62.236	61.844	64.078	-2.9459					105	43	4	0	0	0	0.66721	1	2649	2649		34.173	3.6689	1	184170			45724	5173	37865	37888	49180	49180					0.12961938356897917
QLAREILR	8	Unmodified	_QLAREILR_					0	0	0		nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;nc|ENSG00000197603|Q9H799-5|CPLANE1	nc|ENSG00000197603|Q9H799|CPLANE1	nc|ENSG00000197603|Q9H799|CPLANE1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.7614440917969	2	499.808908	997.603263	2.5206	0.0012598	-3.961	-0.0019797	-1.4404	-0.00071992	499.80657986063636	99.383	0.45753	99.383	99.154	99.612	0					25	10	3	0	0	0	0.028476	1	10956	10956		35.618	0	1	1306700			45725	8727	37866	37889	49181	49181					0.1043655780838435
QLARVDTSP	9	Unmodified	_QLARVDTSP_					0	0	0			REV__ENSG00000158246|ENST00000289166|TENT5B	REV__ENSG00000158246|ENST00000289166|TENT5B	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.74737548828125	2	493.766906	985.519259	-0.033708	-1.6644E-05	-0.49744	-0.00024562	-0.53115	-0.00026227	493.76678825369555	64.799	0.62142	64.799	64.334	64.955	0					21	14	2	0	0	0	0.027462	1	5917	5917		42.396	20.436	1	1192600	+		45726	20560	37867	37890	49182	49182					0.025919819208070294
QLARYLGGSM	10	Unmodified	_QLARYLGGSM_					0	0	0		nc|ENSG00000071655|O95983-2|MBD3;ENSG00000071655|ENST00000434436|MBD3	nc|ENSG00000071655|O95983-2|MBD3	nc|ENSG00000071655|O95983-2|MBD3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.8258666992188	2	548.284408	1094.55426	-0.30502	-0.00016724	-2.1899	-0.0012007	-2.4949	-0.0013679	548.2831798427397	57.846	2.3271	54.501	53.324	55.651	-3.3449					77	45	2	0	0	0	0.026802	1	3778	3778		34.173	11.13	1	48537			45727	1454	37868	37891	49183	49183					0.010769014571224034
QLARYLGGSM	10	Unmodified	_QLARYLGGSM_					0	0	0		nc|ENSG00000071655|O95983-2|MBD3;ENSG00000071655|ENST00000434436|MBD3	nc|ENSG00000071655|O95983-2|MBD3	nc|ENSG00000071655|O95983-2|MBD3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	548.284408	1094.55426	-0.46125	-0.00025289	-2.114	-0.0011591	-2.5752	-0.0014119	548.2828580977665	57.155	1.4894	54.363	53.683	55.173	-2.7921	-0.068685	3.6297E-05	NaN	34.173	61	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20122			45728	1454	37868	37891							0.010769014571224034
QLASFDRRTF	10	Unmodified	_QLASFDRRTF_					0	0	0			REV__ENSG00000226124|ENST00000420128|FTCDNL1	REV__ENSG00000226124|ENST00000420128|FTCDNL1	MULTI-SECPEP	OvCa9_classI_Rep2	2	413.8951110839844	3	414.219283	1239.63602	0.39299	0.00016278	-0.20394	-8.4475E-05	0.18905	7.8307E-05	414.2192044625383	46.209	0.7438	43.5	43.15	43.894	-2.7097					31	14	3	0	0	0	0.026843	1	2778	2778		46.457	8.6453	1	32348	+		45729	23368	37869	37892	49184	49184					0.025787201405591986
QLASFDRRTF	10	Unmodified	_QLASFDRRTF_					0	0	0			REV__ENSG00000226124|ENST00000420128|FTCDNL1	REV__ENSG00000226124|ENST00000420128|FTCDNL1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	414.219283	1239.63602	-0.27031	-0.00011197	-0.083728	-3.4682E-05	-0.35404	-0.00014665	414.2191426495828	46.438	0.83116	43.365	42.979	43.81	-3.0724	-0.067183	9.3106E-05	NaN	46.457	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39426	+		45730	23368	37869	37892							0.025787201405591986
QLCILRTLK	9	Carbamidomethyl (C)	_QLC(Carbamidomethyl (C))ILRTLK_	QLC(1)ILRTLK		QLC(100)ILRTLK		0	1	0		ENST00000432648.7_1_1:39469742-39469931:+|nuORF	ENST00000432648.7_1_1:39469742-39469931:+|nuORF	ENST00000432648.7_1_1:39469742-39469931:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.8367919921875	2	572.847176	1143.6798	1.9806	0.0011346	-2.4804	-0.0014209	-0.49988	-0.00028635	572.8457046130104	85.811	0.40962	85.811	85.663	86.073	0					13	9	2	0	0	0	0.02715	1	9006	9006		101.25	26.209	1	360680			45731	11814	37870	37893	49185	49185	127				0.11370613313329159
QLCNKLCTK	9	Unmodified	_QLCNKLCTK_					0	0	0			REV__Harlequin-int_dup205|chr5:139527356-139527823:+|1.396815432304557|0.0536703186443687|4.7|413.0|15|2|sense	REV__Harlequin-int_dup205|chr5:139527356-139527823:+|1.396815432304557|0.0536703186443687|4.7|413.0|15|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7933349609375	2	525.775362	1049.53617	-0.62104	-0.00032652	4.4043	0.0023157	3.7833	0.0019892	526.2799931416398	48.776	0.22053	48.776	48.63	48.851	0					6	4	2	0	0	0	0.027447	1	3605	3605		47.657	17.154	1	102010	+		45732	28180	37871	37894	49186	49186					0.013384432107159228
QLCSVPSYSIC	11	Unmodified	_QLCSVPSYSIC_					0	0	0		nc|ENSG00000172243|Q9BXN2-5|CLEC7A;nc|ENSG00000172243|Q9BXN2-2|CLEC7A;ENSG00000172243|ENST00000304084|CLEC7A	nc|ENSG00000172243|Q9BXN2-5|CLEC7A	nc|ENSG00000172243|Q9BXN2-5|CLEC7A	MULTI-MSMS	OvCa9_classI_Rep3	3	600.2727661132812	2	600.275392	1198.53623	-4.8728	-0.002925	-0.67204	-0.00040341	-5.5448	-0.0033284	600.2748840186918	159.86	2.843	158.53	158.01	160.85	-1.3316					169	56	5	0	0	0	0.72064	1	13936	13936		22.58	0.61977	1	277240			45733	7281	37872	37895	49187	49187					-0.0550960157991085
QLCYVRSPKL	10	Unmodified	_QLCYVRSPKL_					0	0	0			REV__ENSG00000159128|ENST00000290219|IFNGR2	REV__ENSG00000159128|ENST00000290219|IFNGR2	MULTI-SECPEP	OvCa9_classI_Rep2	2	603.287109375	2	603.836808	1205.65906	0.30279	0.00018283	0.013881	8.3817E-06	0.31667	0.00019121	603.8369390817738	92.033	0.36664	90.798	90.589	90.956	-1.2355					9	6	2	0	0	0	0.026968	1	8171	8171		36.447	8.5645	1	7582.4	+		45734	20596	37873	37896	49188	49188					0.06446022933687345
QLDDLKVEL	9	Unmodified	_QLDDLKVEL_					0	0	0		ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF;ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENST00000450819.1_1_1:237144684-237145005:+|nuORF;ENST00000446039.2_1_7:27309195-27309288:-|nuORF	ENSG00000136942|ENST00000348462|RPL35	ENSG00000136942|ENST00000348462|RPL35	MULTI-MSMS	OvCa99_classI_Rep5	1	536.799072265625	2	536.797872	1071.58119	1.8376	0.00098641	-0.48425	-0.00025995	1.3533	0.00072647	536.7975577786453	106.78	1.0256	106.78	106.54	107.56	0					61	23	4	0	0	0	0.001644	1	12035	12035		233.57	23.725	1	11763000			45735	4541	37874	37897	49189	49189					0.0482628854927043
QLDDLKVEL	9	Unmodified	_QLDDLKVEL_					0	0	0		ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF;ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENST00000450819.1_1_1:237144684-237145005:+|nuORF;ENST00000446039.2_1_7:27309195-27309288:-|nuORF	ENSG00000136942|ENST00000348462|RPL35	ENSG00000136942|ENST00000348462|RPL35	MULTI-MSMS	OvCa9_classI_Rep2	2	536.7984619140625	2	536.797872	1071.58119	-0.77176	-0.00041428	0.30145	0.00016182	-0.47031	-0.00025246	536.7979815021174	107.12	1.3695	106.82	106.47	107.84	-0.30836					67	27	3	0	0	0	0.010478	1	10014	10014		167.23	18.242	1	594800			45736	4541	37874	37897	49190	49190					0.0482628854927043
QLDDLKVEL	9	Unmodified	_QLDDLKVEL_					0	0	0		ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF;ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENST00000450819.1_1_1:237144684-237145005:+|nuORF;ENST00000446039.2_1_7:27309195-27309288:-|nuORF	ENSG00000136942|ENST00000348462|RPL35	ENSG00000136942|ENST00000348462|RPL35	MULTI-MATCH	OvCa9_classI_Rep3	3		2	536.797872	1071.58119	1.2928	0.00069395	-1.5853	-0.00085099	-0.29255	-0.00015704	536.7969488780584	107.9	1.4463	106.7	106.38	107.82	-1.1978	-0.046372	-0.0016236	NaN	233.57	70	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	739170			45737	4541	37874	37897							0.0482628854927043
QLDDLKVEL	9	Unmodified	_QLDDLKVEL_					0	0	0		ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF;ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENST00000450819.1_1_1:237144684-237145005:+|nuORF;ENST00000446039.2_1_7:27309195-27309288:-|nuORF	ENSG00000136942|ENST00000348462|RPL35	ENSG00000136942|ENST00000348462|RPL35	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	536.797872	1071.58119	-2.5972	-0.0013942	2.1619	0.0011605	-0.43535	-0.0002337	536.7989917412831	108.42	1.5241	106.69	106.37	107.89	-1.7256	-0.057625	0.0023993	NaN	233.57	71	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	689960			45738	4541	37874	37897							0.0482628854927043
QLDEGEEMMAR	11	Unmodified	_QLDEGEEMMAR_					0	0	0			REV__nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	REV__nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	437.2744140625	3	436.856805	1307.54859	-0.44558	-0.00019465	-1.1218	-0.00049006	-1.5674	-0.00068471	436.8568759267887	70.103	0.58904	66.622	66.345	66.934	-3.4812					30	11	4	0	0	0	0.025864	1	5313	5313		12.433	0	1	71754	+		45739	18666	37875	37898	49191	49191					-0.09288609907525824
QLDEGKCAY	9	Carbamidomethyl (C)	_QLDEGKC(Carbamidomethyl (C))AY_	QLDEGKC(1)AY		QLDEGKC(69)AY		0	1	0		ENSG00000135842|ENST00000367511|NIBAN1	ENSG00000135842|ENST00000367511|NIBAN1	ENSG00000135842|ENST00000367511|NIBAN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.3712768554688	2	542.242406	1082.47026	-1.4438	-0.00078287	-1.3065	-0.00070844	-2.7503	-0.0014913	542.2417787397973	40.717	0.93638	37.763	37.632	38.569	-2.9541					20	17	2	0	0	0	0.027164	1	1811	1811		68.787	29.981	1	27574			45740	4423	37876	37899	49192	49192	45				-0.06767674430443549
QLDFVRQPGLL	11	Unmodified	_QLDFVRQPGLL_					0	0	0			REV__ENSG00000130702|ENST00000252999|LAMA5	REV__ENSG00000130702|ENST00000252999|LAMA5	MULTI-SECPEP	OvCa99_classI_Rep5	1	430.235595703125	3	429.24695	1284.71902	-0.56587	-0.0002429	-2.5718	-0.001104	-3.1377	-0.0013469	429.2455993350416	37.495	0.32335	37.495	37.298	37.621	0					12	6	3	0	0	0	0.025955	1	2045	2045		30.569	23.857	1	70610	+		45741	18961	37877	37900	49193	49193					0.08805036868579919
QLDLGWSVAVD	11	Unmodified	_QLDLGWSVAVD_					0	0	0			REV__ENSG00000074755|ENST00000381638|ZZEF1	REV__ENSG00000074755|ENST00000381638|ZZEF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	601.79052734375	2	601.806228	1201.5979	1.9608	0.00118	-0.032759	-1.9715E-05	1.9281	0.0011603	601.8059893405328	108.85	0.65279	108.85	108.5	109.15	0					21	14	2	0	0	0	0.025528	1	12282	12282		28.081	0	1	216700	+		45742	16953	37878	37901	49194	49194					0.005167894352325675
QLDPGKVELH	10	Unmodified	_QLDPGKVELH_					0	0	0		chr3:185823213-185823338|217|11.54|0.28|5.35|-|2|IGF2BP2,None|1	chr3:185823213-185823338|217|11.54|0.28|5.35|-|2|IGF2BP2,None|1	chr3:185823213-185823338|217|11.54|0.28|5.35|-|2|IGF2BP2,None|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.8258666992188	2	568.308938	1134.60332	0.39027	0.00022179	-0.082536	-4.6906E-05	0.30773	0.00017489	568.3086465571257	73.795	0.72543	73.795	73.56	74.286	0					36	18	3	0	0	0	0.026906	1	7304	7304		41.427	17.224	1	1995700			45743	480	37879	37902	49195	49195					0.04140513017705416
QLDPGKVELH	10	Unmodified	_QLDPGKVELH_					0	0	0		chr3:185823213-185823338|217|11.54|0.28|5.35|-|2|IGF2BP2,None|1	chr3:185823213-185823338|217|11.54|0.28|5.35|-|2|IGF2BP2,None|1	chr3:185823213-185823338|217|11.54|0.28|5.35|-|2|IGF2BP2,None|1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	568.308938	1134.60332	-0.93012	-0.00052859	1.9271	0.0010952	0.99701	0.00056661	568.30931355915	76.461	0.314	74.09	73.877	74.191	-2.3715	0.14738	0.0021579	NaN	41.427	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11427			45744	480	37879	37902							0.04140513017705416
QLDPLKEVN	9	Unmodified	_QLDPLKEVN_					0	0	0		tr|A0A553SNG3|A0A553SNG3_NIACIPhageportalproteinOS=NialliacirculansOX=1397GN=CEQ21_24460PE=4SV=1	tr|A0A553SNG3|A0A553SNG3_NIACIPhageportalproteinOS=NialliacirculansOX=1397GN=CEQ21_24460PE=4SV=1	tr|A0A553SNG3|A0A553SNG3_NIACIPhageportalproteinOS=NialliacirculansOX=1397GN=CEQ21_24460PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.7949829101562	2	528.290214	1054.56587	-0.4828	-0.00025506	-1.6794	-0.00088721	-2.1622	-0.0011423	528.2893640030361	65.363	0.70923	65.363	64.916	65.625	0					39	17	5	0	0	0	0.027462	1	6011	6011		14.865	0	1	1175000			45745	33925	37880	37903	49196	49196					0.040774217520947786
QLDRRLFLF	9	Unmodified	_QLDRRLFLF_					0	0	0			REV__nc|ENSG00000164050|O43157-3|PLXNB1	REV__nc|ENSG00000164050|O43157-3|PLXNB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.2284240722656	3	403.236385	1206.68733	1.501	0.00060528	-0.688	-0.00027743	0.81305	0.00032785	403.2360922336784	62.911	0.55834	62.911	62.621	63.179	0					16	13	2	0	0	0	0.027455	1	5604	5604		34.173	0	1	195190	+		45746	20927	37881	37904	49197	49197					0.09225088905259327
QLDSHVHAV	9	Unmodified	_QLDSHVHAV_					0	0	0		ENST00000462880.1_1_1:153631216-153631939:+|nuORF;ENST00000474959.5_1_1:153631216-153631408:+|nuORF;ENSG00000143553|ENST00000368685|SNAPIN	ENST00000462880.1_1_1:153631216-153631939:+|nuORF	ENST00000462880.1_1_1:153631216-153631939:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	503.2594909667969	2	503.259248	1004.50394	-0.57769	-0.00029073	0.16307	8.2068E-05	-0.41462	-0.00020866	503.25918854016265	44.547	0.718	44.547	44.35	45.068	0					38	15	4	0	0	0	0.015253	1	3017	3017		152.63	78.659	1	2025100			45747	5071	37882	37905	49198	49198					0.0018711512361733185
QLDSNDSEIE	10	Unmodified	_QLDSNDSEIE_					0	0	0		nc|ENSG00000119321|Q5T1M5-3|FKBP15;FKBP15|p.E679Rfs*44|1|0.14|ENSG00000119321|chr9:113178681-113178681|C/-|frameshift_variant;nc|ENSG00000119321|Q5T1M5-2|FKBP15;ENSG00000119321|ENST00000238256|FKBP15	nc|ENSG00000119321|Q5T1M5-3|FKBP15	nc|ENSG00000119321|Q5T1M5-3|FKBP15	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.8567504882812	2	575.24894	1148.48333	-1.1546	-0.0006642	1.8677	0.0010744	0.71309	0.00041021	575.7514822868677	70.603	0.57427	67.122	66.934	67.508	-3.4812					14	11	2	0	0	0	0.026867	1	5357	5357		42.864	20.904	1	23347			45748	3353	37883	37906	49199	49199					-0.08497564837352911
QLDTLRQK	8	Unmodified	_QLDTLRQK_					0	0	0		CON__Q32PJ2	CON__Q32PJ2	CON__Q32PJ2	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.3091125488281	2	501.290548	1000.56654	-1.1862	-0.00059464	0.16398	8.22E-05	-1.0222	-0.00051244	501.29037980060406	32.828	0.49358	30.118	29.976	30.47	-2.7097					13	9	2	0	0	0	0.028476	1	1150	1150		32.812	9.2897	1	13419		+	45749	645	37884	37907	49200	49200					0.06628261191804086
QLEDDIVAKP	10	Unmodified	_QLEDDIVAKP_					0	0	0		nc|ENSG00000161013|Q9UQ53-2|MGAT4B;ENSG00000161013|ENST00000292591|MGAT4B;nc|ENSG00000161013|Q9UQ53-3|MGAT4B;ENST00000520822.5_1_5:179226870-179227569:-|nuORF;ENST00000523382.5_1_5:179225178-179228384:-|nuORF	nc|ENSG00000161013|Q9UQ53-2|MGAT4B	nc|ENSG00000161013|Q9UQ53-2|MGAT4B	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.3202514648438	2	564.300778	1126.587	1.2176	0.00068712	1.0125	0.00057134	2.2301	0.0012585	564.3012702664091	158.01	1.9734	158.01	157.55	159.52	0					67	40	3	0	0	0	0.026956	1	18626	18626		19.997	0	1	117740			45750	6115	37885	37908	49201	49201					0.02877387060948422
QLEEEKAAL	9	Unmodified	_QLEEEKAAL_					0	0	0		ENST00000426910.1_1_X:134568027-134569581:+|nuORF;ENSG00000047662|ENST00000265018|FAM184B	ENST00000426910.1_1_X:134568027-134569581:+|nuORF	ENST00000426910.1_1_X:134568027-134569581:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	515.7760009765625	2	515.774396	1029.53424	0.14517	7.4876E-05	-0.69	-0.00035588	-0.54482	-0.00028101	515.7740265782754	71.973	1.567	71.973	71.668	73.235	0					75	38	4	0	0	0	0.094616	1	6970	6970		98.629	13.469	1	26788000			45751	1150	37886	37909	49202	49202					0.02065428998139396
QLEESLLI	8	Unmodified	_QLEESLLI_					0	0	0		ENST00000538995.1_1_11:63449027-63481555:+|nuORF;ENST00000338850.5_1_11:63449027-63481555:+|nuORF	ENST00000538995.1_1_11:63449027-63481555:+|nuORF	ENST00000538995.1_1_11:63449027-63481555:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.88018798828125	2	472.768583	943.522613	-0.28594	-0.00013518	0.21016	9.9356E-05	-0.075779	-3.5826E-05	472.7682005140481	38.965	0.58207	38.965	38.705	39.287	0					20	12	2	0	0	0	0.028476	1	2294	2294		17.365	0	1	252960			45752	10543	37887	37910	49203	49203					0.04859231974819522
QLEESLLI	8	Unmodified	_QLEESLLI_					0	0	0		ENST00000538995.1_1_11:63449027-63481555:+|nuORF;ENST00000338850.5_1_11:63449027-63481555:+|nuORF	ENST00000538995.1_1_11:63449027-63481555:+|nuORF	ENST00000538995.1_1_11:63449027-63481555:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	472.768583	943.522613	0.61241	0.00028953	3.8749	0.0018319	4.4873	0.0021214	472.77033097552913	41.369	0.49263	38.66	38.438	38.931	-2.7097	-0.10555	-2.1567E-05	NaN	17.365	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33368			45753	10543	37887	37910							0.04859231974819522
QLEFILMVLI	10	Unmodified	_QLEFILMVLI_					0	0	0		ENSG00000170006|ENST00000304385|TMEM154	ENSG00000170006|ENST00000304385|TMEM154	ENSG00000170006|ENST00000304385|TMEM154	MULTI-SECPEP	OvCa9_classI_Rep4_	4	407.5798645019531	3	406.910399	1217.70937	1.1445	0.00046569	-3.1135	-0.0012669	-1.969	-0.00080121	407.2440350612917	58.24	0.8	54.895	54.647	55.447	-3.3449					23	15	2	0	0	0	0.02663	1	3884	3884		28.081	0	1	38711			45754	7064	37888	37911	49204	49204					0.10922132538848928
QLEHQLQNL	9	Unmodified	_QLEHQLQNL_					0	0	0			REV__TBKBP1|p.F113L|1|0.12|ENSG00000198933|chr17:47696824-47696824|C/A|missense_variant	REV__TBKBP1|p.F113L|1|0.12|ENSG00000198933|chr17:47696824-47696824|C/A|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	561.7971801757812	2	561.798737	1121.58292	2.5894	0.0014547	-0.10666	-5.9923E-05	2.4827	0.0013948	561.7987130155875	82.163	1.1714	82.163	81.694	82.865	0					86	27	5	0	0	0	0.041116	1	8501	8501		125.81	0	1	9867600	+		45755	29487	37889	37912	49205	49205					0.026993423579142473
QLEHQLQNL	9	Unmodified	_QLEHQLQNL_					0	0	0			REV__TBKBP1|p.F113L|1|0.12|ENSG00000198933|chr17:47696824-47696824|C/A|missense_variant	REV__TBKBP1|p.F113L|1|0.12|ENSG00000198933|chr17:47696824-47696824|C/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	561.7979736328125	2	561.798737	1121.58292	-0.11321	-6.3599E-05	-0.36331	-0.00020411	-0.47651	-0.0002677	561.7984596868567	83.597	1.7572	81.998	81.64	83.397	-1.5988					89	34	5	0	0	0	0.026923	3	7169	7169;7188;7195		138.83	27.177	1	1100100	+		45756	29487	37889	37912	49206;49207;49208	49206					0.026993423579142473
QLEHQLQNL	9	Unmodified	_QLEHQLQNL_					0	0	0			REV__TBKBP1|p.F113L|1|0.12|ENSG00000198933|chr17:47696824-47696824|C/A|missense_variant	REV__TBKBP1|p.F113L|1|0.12|ENSG00000198933|chr17:47696824-47696824|C/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	561.7998657226562	2	561.798737	1121.58292	-1.346	-0.0007562	0.54203	0.00030451	-0.804	-0.00045169	561.7990663680788	84.167	1.9347	81.906	81.611	83.545	-2.261					102	39	5	0	0	0	0.010619	2	4861	4861;4872		166.78	18.74	1	1927700	+		45757	29487	37889	37912	49209;49210	49209					0.026993423579142473
QLEHQLQNL	9	Unmodified	_QLEHQLQNL_					0	0	0			REV__TBKBP1|p.F113L|1|0.12|ENSG00000198933|chr17:47696824-47696824|C/A|missense_variant	REV__TBKBP1|p.F113L|1|0.12|ENSG00000198933|chr17:47696824-47696824|C/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.7992553710938	2	561.798737	1121.58292	2.2896	0.0012863	-2.5491	-0.0014321	-0.25952	-0.0001458	561.7971902300202	84.649	2.1778	81.986	81.549	83.726	-2.6629					114	44	5	0	0	0	0.019428	4	7112	7112;7124;7136;7163		147.69	13.881	1	1628700	+		45758	29487	37889	37912	49211;49212;49213;49214	49211					0.026993423579142473
QLEKTIETL	9	Unmodified	_QLEKTIETL_					0	0	0		nc|ENSG00000115355|Q3V6T2-5|CCDC88A;nc|ENSG00000115355|Q3V6T2-4|CCDC88A;nc|ENSG00000115355|Q3V6T2-2|CCDC88A;nc|ENSG00000115355|Q3V6T2-3|CCDC88A;ENSG00000115355|ENST00000436346|CCDC88A	nc|ENSG00000115355|Q3V6T2-5|CCDC88A	nc|ENSG00000115355|Q3V6T2-5|CCDC88A	MULTI-MSMS	OvCa9_classI_Rep3	3	537.80712890625	2	537.805697	1073.59684	0.71361	0.00038378	-0.24432	-0.0001314	0.46928	0.00025238	537.8055946767985	98.053	1.9972	96.293	95.913	97.91	-1.7595					103	38	3	0	0	0	0.3076	1	6541	6541		62.107	3.3255	1	609940			45759	3089	37890	37913	49215	49215					0.06298575066330159
QLEKVLQIL	9	Unmodified	_QLEKVLQIL_					0	0	0		tr|A0A553SPW0|A0A553SPW0_NIACIAspartokinaseOS=NialliacirculansOX=1397GN=CEQ21_10875PE=3SV=1	tr|A0A553SPW0|A0A553SPW0_NIACIAspartokinaseOS=NialliacirculansOX=1397GN=CEQ21_10875PE=3SV=1	tr|A0A553SPW0|A0A553SPW0_NIACIAspartokinaseOS=NialliacirculansOX=1397GN=CEQ21_10875PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.326171875	2	542.342249	1082.66995	-1.8056	-0.00097926	0.78438	0.0004254	-1.0212	-0.00055386	542.342236795256	73.078	0.62988	69.682	69.446	70.076	-3.3961					16	12	2	0	0	0	0.027462	1	5669	5669		34.173	0	1	34231			45760	34094	37891	37914	49216	49216					0.1319174857960661
QLEKVLYAE	9	Unmodified	_QLEKVLYAE_					0	0	0			REV__CTTNBP2|p.D1529Y|1|0.24|ENSG00000077063|chr7:117719563-117719563|C/A|missense_variant	REV__CTTNBP2|p.D1529Y|1|0.24|ENSG00000077063|chr7:117719563-117719563|C/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.84228515625	2	546.800414	1091.58628	-1.4041	-0.00076774	-1.2843	-0.00070226	-2.6884	-0.00147	546.7997159463046	43.82	0.38794	43.82	43.565	43.952	0					16	8	2	0	0	0	0.027462	1	2888	2888		25.574	4.6271	1	56634	+		45761	16256	37892	37915	49217	49217					0.04414592411899321
QLELILETIPP	11	Unmodified	_QLELILETIPP_					0	0	0		nc|ENSG00000181085|Q8TD08-2|MAPK15;nc|ENSG00000181085|Q8TD08-3|MAPK15;ENSG00000181085|ENST00000338033|MAPK15	nc|ENSG00000181085|Q8TD08-2|MAPK15	nc|ENSG00000181085|Q8TD08-2|MAPK15	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3678588867188	2	633.371204	1264.72785	-3.894	-0.0024663	0.67825	0.00042958	-3.2157	-0.0020368	633.3715080583703	149.82	2.9263	149.6	148.42	151.35	-0.22696					170	58	4	0	0	0	0.70865	1	15232	15232		26.693	3.1702	1	116220			45762	7918	37893	37916	49218	49218					0.10607965714393686
QLELILETIPP	11	Unmodified	_QLELILETIPP_					0	0	0		nc|ENSG00000181085|Q8TD08-2|MAPK15;nc|ENSG00000181085|Q8TD08-3|MAPK15;ENSG00000181085|ENST00000338033|MAPK15	nc|ENSG00000181085|Q8TD08-2|MAPK15	nc|ENSG00000181085|Q8TD08-2|MAPK15	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3688354492188	2	633.371204	1264.72785	-4.1446	-0.0026251	0.87395	0.00055353	-3.2707	-0.0020716	633.3716506579397	149.94	3.0119	148.99	147.85	150.86	-0.9512					218	59	5	0	0	0	0.72491	1	12703	12703		16.717	0	1	281260			45763	7918	37893	37916	49219	49219					0.10607965714393686
QLEPEQPWA	9	Unmodified	_QLEPEQPWA_					0	0	0			REV__ENST00000416555.1_1_21:41097810-41097978:+|nuORF	REV__ENST00000416555.1_1_21:41097810-41097978:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.2862548828125	2	549.266739	1096.51892	2.2037	0.0012104	-0.28745	-0.00015789	1.9163	0.0010525	549.2662615506895	80.17	0.28787	80.17	80.111	80.399	0					8	6	2	0	0	0	0.027411	1	8218	8218		64.207	0	1	134100	+		45764	25548	37894	37917	49220	49220					-0.025474377990576613
QLEQEKQLL	9	Unmodified	_QLEQEKQLL_					0	0	0		nc|ENSG00000110321|P78344-2|EIF4G2;ENSG00000110321|ENST00000339995|EIF4G2;ENST00000525606.5_1_11:10819365-10820979:-|nuORF	nc|ENSG00000110321|P78344-2|EIF4G2	nc|ENSG00000110321|P78344-2|EIF4G2	MULTI-MSMS	OvCa99_classI_Rep5	1	564.8175048828125	2	564.816596	1127.61864	2.5775	0.0014558	-0.95008	-0.00053662	1.6274	0.00091919	564.8162277754152	86.022	1.0933	86.022	85.544	86.637	0					84	26	4	0	0	0	0.1804	1	9067	9067		79.713	0	1	6765000			45765	2767	37895	37918	49221	49221					0.059933798148904316
QLEQMVCGMPE	11	Unmodified	_QLEQMVCGMPE_					0	0	0		ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	422.2322998046875	3	422.183865	1263.52977	0.1698	7.1687E-05	4.0315	0.001702	4.2013	0.0017737	422.18547523260895	51.352	0.50673	51.352	51.12	51.627	0					26	11	3	0	0	0	0.025597	1	3952	3952		31.068	0	1	528740			45766	2336	37896	37919	49222	49222					-0.09145862802938609
QLERLLLLLV	10	Unmodified	_QLERLLLLLV_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	OvCa99_classI_Rep5	1	605.4017333984375	2	605.400099	1208.78564	1.6058	0.00097217	-0.89722	-0.00054318	0.7086	0.00042899	605.3994659025334	149.41	0.7339	149.41	149.11	149.84	0					32	14	3	0	0	0	0.82648	1	17507	17507		15.642	0.77694	1	286410			45767	3125	37897	37920	49223	49223					0.1896027243046774
QLESKEIHT	9	Unmodified	_QLESKEIHT_					0	0	0			REV__nc|ENSG00000150676|Q8IWF9-3|CCDC83	REV__nc|ENSG00000150676|Q8IWF9-3|CCDC83	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.3489379882812	2	542.785296	1083.55604	-0.27148	-0.00014736	0.1346	7.3058E-05	-0.13688	-7.4297E-05	543.2867359070867	59.939	0.93383	56.509	55.964	56.898	-3.43					36	18	3	0	0	0	0.027462	1	3963	3963		53.351	20.539	1	51615	+		45768	28924	37898	37921	49224	49224					0.017602337466996687
QLESLLQLWL	10	Unmodified	_QLESLLQLWL_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.907470703125	3	414.907934	1241.70197	-0.70867	-0.00029403	-2.8713	-0.0011913	-3.58	-0.0014854	414.9066595651532	71.408	1.0758	67.952	67.677	68.753	-3.4563					63	21	4	0	0	0	0.5635	1	5439	5439		46.457	4.1187	1	500780			45769	3125	37899	37922	49225	49225					0.09079116262751086
QLETQNNNL	9	Unmodified	_QLETQNNNL_					0	0	0		nc|ENSG00000115355|Q3V6T2-5|CCDC88A;nc|ENSG00000115355|Q3V6T2-4|CCDC88A;nc|ENSG00000115355|Q3V6T2-2|CCDC88A;nc|ENSG00000115355|Q3V6T2-3|CCDC88A;ENSG00000115355|ENST00000436346|CCDC88A	nc|ENSG00000115355|Q3V6T2-5|CCDC88A	nc|ENSG00000115355|Q3V6T2-5|CCDC88A	MULTI-MSMS	OvCa9_classI_Rep3	3	537.2644653320312	2	537.264727	1072.5149	1.5965	0.00085776	-2.5222	-0.0013551	-0.92571	-0.00049735	537.2632206474979	106.63	1.7205	105.36	105.01	106.73	-1.267					78	33	4	0	0	0	0.5811	1	7537	7537		34.173	1.3601	1	642900			45770	3089	37900	37923	49226	49226					-0.018455272927667465
QLEVTPGR	8	Unmodified	_QLEVTPGR_					0	0	0		ENST00000375272.5_1_2:171673404-171675102:+|nuORF	ENST00000375272.5_1_2:171673404-171675102:+|nuORF	ENST00000375272.5_1_2:171673404-171675102:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	449.28656005859375	2	450.250892	898.48723	0.39405	0.00017742	1.5388	0.00069283	1.9328	0.00087025	450.25064618938546	52.545	0.52428	52.545	52.304	52.828	0					26	11	3	0	0	0	0.028476	1	4158	4158		23.042	0	1	575250			45771	11054	37901	37924	49227	49227					0.03392614237657199
QLEYLDPIVAL	11	Unmodified	_QLEYLDPIVAL_					0	0	0			REV__tr|A0A553SFV6|A0A553SFV6_NIACICoproporphyrinogenIIIoxidaseOS=NialliacirculansOX=1397GN=CEQ21_09620PE=4SV=1	REV__tr|A0A553SFV6|A0A553SFV6_NIACICoproporphyrinogenIIIoxidaseOS=NialliacirculansOX=1397GN=CEQ21_09620PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	425.5628356933594	3	425.239461	1272.69655	1.2131	0.00051585	-0.95876	-0.0004077	0.25433	0.00010815	425.2392406019307	69.55	0.64941	66.736	66.512	67.161	-2.8144					27	12	3	0	0	0	0.025806	1	3146	3146		16.53	0	1	31226	+		45772	29627	37902	37925	49228	49228					0.07111392680280915
QLFALRLF	8	Unmodified	_QLFALRLF_					0	0	0			REV__ENSG00000233436|ENST00000422652|BTBD18	REV__ENSG00000233436|ENST00000422652|BTBD18	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.2752990722656	2	504.30547	1006.59639	-1.9865	-0.0010018	-1.2967	-0.00065391	-3.2831	-0.0016557	504.3043600954397	84.713	1.093	83.166	82.899	83.992	-1.5462					25	21	2	0	0	0	0.028476	1	7319	7319		44.531	11.015	1	11216	+		45773	23396	37903	37926	49229	49229					0.0933524492778588
QLFAYCFQL	9	Unmodified	_QLFAYCFQL_					0	0	0			REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.3424072265625	2	566.778428	1131.5423	2.3037	0.0013057	2.2456	0.0012728	4.5493	0.0025785	566.7797081097257	95.332	0.37309	95.332	95.204	95.577	0					12	8	2	0	0	0	0.027462	1	10434	10434		30.504	8.5438	1	320580	+		45774	19775	37904	37927	49230	49230					-0.018207152860895803
QLFEEILSN	9	Unmodified	_QLFEEILSN_					0	0	0		ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.2783203125	2	546.782222	1091.54989	1.3492	0.00073771	3.3944	0.001856	4.7436	0.0025937	546.7842257311365	119.05	0.6138	119.05	118.72	119.33	0					22	12	2	0	0	0	0.027446	1	13663	13663		60.118	1.3363	1	241660			45775	6554	37905	37928	49231	49231					0.007777155151870829
QLFETSAKE	9	Unmodified	_QLFETSAKE_					0	0	0		ENSG00000111737|ENST00000229340|RAB35	ENSG00000111737|ENST00000229340|RAB35	ENSG00000111737|ENST00000229340|RAB35	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.3096923828125	2	526.766571	1051.51859	1.9184	0.0010105	0.07256	3.8222E-05	1.991	0.0010488	526.7666807220511	95.237	0.54654	95.237	94.992	95.538	0					21	12	2	0	0	0	0.027411	1	10415	10415		67.494	21.521	1	540690			45776	2849	37906	37929	49232	49232					-0.005108575189069597
QLFHALVM	8	Unmodified	_QLFHALVM_					0	0	0			REV__ENST00000486274.5_1_3:99980342-100042509:+|nuORF	REV__ENST00000486274.5_1_3:99980342-100042509:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.2890930175781	2	479.762581	957.510608	0.11602	5.5663E-05	3.9352	0.001888	4.0512	0.0019436	479.7637336186753	67.461	0.26693	67.461	67.337	67.604	0					9	6	2	0	0	0	0.028476	1	6314	6314		44.531	0	1	138190	+		45777	16604	37907	37930	49233	49233					0.03015336750638653
QLFHPDSNYF	10	Unmodified	_QLFHPDSNYF_					0	0	0		ENST00000368090.3_1_1:160000264-160000540:-|nuORF	ENST00000368090.3_1_1:160000264-160000540:-|nuORF	ENST00000368090.3_1_1:160000264-160000540:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	423.9211730957031	3	423.196256	1266.56694	0.64135	0.00027142	3.0847	0.0013055	3.7261	0.0015769	423.19775283287277	43.444	0.84336	40.735	40.459	41.303	-2.7097					27	16	3	0	0	0	0.026956	1	2459	2459		19.263	0	1	23158			45778	10861	37908	37931	49234	49234					-0.05568363879001481
QLFKALPSNI	10	Unmodified	_QLFKALPSNI_					0	0	0		tr|A0A553SKD7|A0A553SKD7_NIACIATP-dependentRecD2DNAhelicaseOS=NialliacirculansOX=1397GN=recD2PE=3SV=1	tr|A0A553SKD7|A0A553SKD7_NIACIATP-dependentRecD2DNAhelicaseOS=NialliacirculansOX=1397GN=recD2PE=3SV=1	tr|A0A553SKD7|A0A553SKD7_NIACIATP-dependentRecD2DNAhelicaseOS=NialliacirculansOX=1397GN=recD2PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.3145141601562	2	565.832049	1129.64954	0.62701	0.00035478	-2.0201	-0.001143	-1.393	-0.00078823	565.8309352629755	91.16	0.46412	88.617	88.398	88.862	-2.5425					13	8	2	0	0	0	0.026494	1	7850	7850		58.23	0	1	19755			45779	33607	37909	37932	49235	49235					0.08990577919780662
QLFQACHY	8	Unmodified	_QLFQACHY_					0	0	0			REV__ENST00000272748.8_1_2:176857913-176867018:-|nuORF	REV__ENST00000272748.8_1_2:176857913-176867018:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.2934875488281	2	505.231645	1008.44874	1.2659	0.00063957	-3.962	-0.0020017	-2.6961	-0.0013622	505.229440700519	109.82	0.35838	109.82	109.59	109.95	0					11	7	2	0	0	0	0.028476	1	12452	12452		13.775	6.085	1	59562	+		45780	24080	37910	37933	49236	49236					-0.0551501466851505
QLFQIGRKPK	10	Unmodified	_QLFQIGRKPK_					0	0	0			REV__ENSG00000124198|ENST00000371917|ARFGEF2	REV__ENSG00000124198|ENST00000371917|ARFGEF2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	405.23828125	3	405.583785	1213.72953	0.5826	0.00023629	0.1394	5.6537E-05	0.722	0.00029283	405.58394203001404	45.87	0.31291	42.797	42.666	42.979	-3.0724					8	5	2	0	0	0	0.026602	1	2365	2365		20.03	0	1	8855.7	+		45781	18671	37911	37934	49237	49237					0.1312106431362281
QLFRHRDRKLL	11	Unmodified	_QLFRHRDRKLL_					0	0	0		ENSG00000260220|ENST00000638797|CCDC187	ENSG00000260220|ENST00000638797|CCDC187	ENSG00000260220|ENST00000638797|CCDC187	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.8172302246094	3	494.631909	1480.8739	1.4118	0.00069832	0.27909	0.00013805	1.6909	0.00083637	494.63109314062604	109.09	0.43793	109.09	108.8	109.24	0					18	9	3	0	0	0	0.026221	1	12349	12349		25.126	11.04	1	123550			45782	9490	37912	37935	49238	49238					0.15269705793639332
QLFRRGEII	9	Unmodified	_QLFRRGEII_					0	0	0		ENST00000515558.1_1_5:126394507-126407313:-|nuORF	ENST00000515558.1_1_5:126394507-126407313:-|nuORF	ENST00000515558.1_1_5:126394507-126407313:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.334228515625	2	566.33529	1130.65603	0.74278	0.00042066	-0.38212	-0.00021641	0.36065	0.00020425	566.3348766250632	102.44	2.1946	100.24	99.471	101.67	-2.1994					96	41	4	0	0	0	0.53483	1	9243	9243		39.253	0.44669	1	222650			45783	13050	37913	37936	49239	49239					0.09592515871190699
QLFSIKADK	9	Unmodified	_QLFSIKADK_					0	0	0			REV__nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1	REV__nc|ENSG00000204104|Q8TDR0-2|TRAF3IP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.2733154296875	2	525.303124	1048.5917	0.57324	0.00030112	0.073676	3.8702E-05	0.64691	0.00033983	525.3029763524444	105.62	0.48324	105.62	105.53	106.01	0					17	10	2	0	0	0	0.027462	1	11875	11875		35.618	7.364	1	183670	+		45784	23126	37914	37937	49240	49240					0.06934315994340068
QLFTDVDVR	9	Unmodified	_QLFTDVDVR_					0	0	0			REV__SMYD1|p.T230Rfs*13|1|0.05|ENSG00000115593|chr2:88093545-88093546|-/GGTCACTGGCCTGGATCTCATGGAATCCT|frameshift_variant	REV__SMYD1|p.T230Rfs*13|1|0.05|ENSG00000115593|chr2:88093545-88093546|-/GGTCACTGGCCTGGATCTCATGGAATCCT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.2548828125	2	546.787838	1091.56112	-0.88602	-0.00048447	0.15534	8.4936E-05	-0.73068	-0.00039953	546.7880419319401	79.838	0.97246	77.087	76.797	77.769	-2.7514					46	19	3	0	0	0	0.027438	1	6482	6482		56.434	12.317	1	255730	+		45785	18256	37915	37938	49241	49241					0.01900537609321873
QLFVFNDSTLI	11	Unmodified	_QLFVFNDSTLI_					0	0	0		nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	MULTI-SECPEP	OvCa9_classI_Rep2	2	432.2220458984375	3	432.899328	1295.67615	-1.446	-0.00062599	1.6248	0.00070338	0.17878	7.7394E-05	432.9002150858792	63.379	0.52201	60.635	60.48	61.002	-2.7444					12	9	2	0	0	0	0.025668	1	4783	4783		35.178	1.0917	1	10935			45786	8478	37916	37939	49242	49242					0.04014222020464331
QLGHRLQLN	9	Unmodified	_QLGHRLQLN_					0	0	0		nc|ENSG00000240771|Q86VW2-2|ARHGEF25;ENSG00000240771|ENST00000286494|ARHGEF25;nc|ENSG00000240771|Q86VW2-3|ARHGEF25	nc|ENSG00000240771|Q86VW2-2|ARHGEF25	nc|ENSG00000240771|Q86VW2-2|ARHGEF25	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.7911987304688	2	539.809439	1077.60433	1.7088	0.00092242	2.1152	0.0011418	3.824	0.0020642	539.8108043225652	129.67	0.28014	129.67	129.59	129.87	0					6	5	2	0	0	0	0.027462	1	15043	15043		30.504	13.139	1	26291			45787	9344	37917	37940	49243	49243					0.06862772177305487
QLGKTSLFITI	11	Unmodified	_QLGKTSLFITI_					0	0	0			REV__tr|A0A553SGK5|A0A553SGK5_NIACIPhosphatetransportsystempermeaseproteinOS=NialliacirculansOX=1397GN=pstCPE=3SV=1	REV__tr|A0A553SGK5|A0A553SGK5_NIACIPhosphatetransportsystempermeaseproteinOS=NialliacirculansOX=1397GN=pstCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	407.5798034667969	3	407.579818	1219.71762	0.61537	0.00025081	-2.9691	-0.0012102	-2.3538	-0.00095934	407.5786357790963	57.72	2.7424	54.928	54.526	57.269	-2.792					151	53	5	0	0	0	0.62561	1	4125	4125		42.338	2.2799	1	1780300	+		45788	29713	37918	37941	49244	49244					0.11655402779797441
QLGLSGLEP	9	Unmodified	_QLGLSGLEP_					0	0	0			REV__ENST00000460419.1_1_3:182971762-182971975:+|nuORF	REV__ENST00000460419.1_1_3:182971762-182971975:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.8946838378906	2	457.2531	912.491647	2.5623	0.0011716	-1.408	-0.0006438	1.1543	0.00052781	457.2529411873961	75.989	0.47373	75.989	75.764	76.238	0					23	11	3	0	0	0	0.027441	1	7602	7602		49.442	3.4896	1	258590	+		45789	26081	37919	37942	49245	49245					0.03190078660566087
QLGQFIFIVTF	11	Unmodified	_QLGQFIFIVTF_					0	0	0		nc|ENSG00000181652|Q674R7-3|ATG9B;ENSG00000181652|ENST00000639579|ATG9B	nc|ENSG00000181652|Q674R7-3|ATG9B	nc|ENSG00000181652|Q674R7-3|ATG9B	MULTI-MSMS	OvCa9_classI_Rep4_	4	438.24822998046875	3	438.24818	1311.72271	-0.94426	-0.00041382	-2.2866	-0.0010021	-3.2309	-0.0014159	438.24727429837515	44.073	2.9282	41.065	40.326	43.254	-3.0074					162	56	4	0	0	0	0.67998	1	2140	2140		36.528	6.9772	1	4884200			45790	7943	37920	37943	49246	49246					0.0793170664239824
QLGQVWRYLRA	11	Unmodified	_QLGQVWRYLRA_					0	0	0		ENSG00000260903|ENST00000562532|XKR7	ENSG00000260903|ENST00000562532|XKR7	ENSG00000260903|ENST00000562532|XKR7	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.7456970214844	3	463.929844	1388.7677	-0.23489	-0.00010897	-3.9146	-0.0018161	-4.1495	-0.0019251	463.9278915833438	42.845	0.26126	42.845	42.709	42.97	0					9	5	2	0	0	0	0.025864	1	2778	2778		12.433	0	1	116740			45791	9496	37921	37944	49247	49247					0.08886950228315982
QLGREQLVP	9	Unmodified	_QLGREQLVP_					0	0	0		ENST00000457807.5_1_21:33873793-33887497:+|nuORF;ENST00000464037.5_1_21:33825516-33887497:+|nuORF;nc|ENSG00000166979|P58658-3|EVA1C;ENSG00000166979|ENST00000300255|EVA1C	ENST00000457807.5_1_21:33873793-33887497:+|nuORF	ENST00000457807.5_1_21:33873793-33887497:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.8369750976562	2	520.298373	1038.58219	0.084433	4.3931E-05	3.8024	0.0019784	3.8868	0.0020223	520.3002620612984	114.68	1.6298	114.56	114.26	115.89	-0.11777					58	32	2	0	0	0	0.027462	1	10987	10987		38.806	25.847	1	164280			45792	6743	37922	37945	49248	49248					0.064445477088384
QLGRLLDLL	9	Unmodified	_QLGRLLDLL_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6;ENST00000592403.1_1_19:11327586-11327727:-|nuORF	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3119506835938	2	520.826766	1039.63898	0.81278	0.00042332	2.9097	0.0015154	3.7225	0.0019388	520.8283692282481	84.841	0.63462	82.195	82.025	82.66	-2.6463					16	12	2	0	0	0	0.027462	1	7153	7153		34.173	7.4796	1	69253			45793	3959	37923	37946	49249	49249					0.12074595265380594
QLGRLLIGL	9	Unmodified	_QLGRLLIGL_					0	0	0		nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC	nc|ENSG00000290691|A6NGW2|STRCP1	nc|ENSG00000290691|A6NGW2|STRCP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.7684326171875	2	491.824027	981.633501	-0.22753	-0.0001119	0.09005	4.4289E-05	-0.13748	-6.7616E-05	491.8239513626485	69.226	1.4654	65.745	65.371	66.836	-3.4812					82	29	4	0	0	0	0.027462	1	5128	5128		17.365	0	1	503890			45794	9370	37924	37947	49250	49250					0.1419491647357063
QLGRPVEEL	9	Unmodified	_QLGRPVEEL_					0	0	0			REV__ENST00000584483.5_1_17:61912248-61912488:-|nuORF	REV__ENST00000584483.5_1_17:61912248-61912488:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.31201171875	2	520.790381	1039.56621	1.4019	0.0007301	4.0044	0.0020855	5.4063	0.0028156	520.792377993746	79.562	0.75993	79.562	79.474	80.234	0					24	18	2	0	0	0	0.027462	1	8170	8170		37.812	8.662	1	1488900	+		45795	27843	37925	37948	49251	49251					0.048008414719333814
QLGRPVEEL	9	Unmodified	_QLGRPVEEL_					0	0	0			REV__ENST00000584483.5_1_17:61912248-61912488:-|nuORF	REV__ENST00000584483.5_1_17:61912248-61912488:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.3101196289062	2	520.790381	1039.56621	-0.24846	-0.00012939	-1.1846	-0.00061695	-1.4331	-0.00074634	521.7919550926807	83.677	1.4313	82.078	81.415	82.846	-1.5988					81	28	4	0	0	0	0.027447	1	7107	7107		47.657	3.5405	1	75891	+		45796	27843	37925	37948	49252	49252					0.048008414719333814
QLGRPVEEL	9	Unmodified	_QLGRPVEEL_					0	0	0			REV__ENST00000584483.5_1_17:61912248-61912488:-|nuORF	REV__ENST00000584483.5_1_17:61912248-61912488:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3117065429688	2	520.790381	1039.56621	0.57904	0.00030156	-1.9146	-0.00099709	-1.3355	-0.00069553	520.790110374464	84.627	1.4687	81.964	81.363	82.832	-2.6629					57	30	3	0	0	0	0.027447	1	7057	7057		39.253	7.298	1	131240	+		45797	27843	37925	37948	49253	49253					0.048008414719333814
QLGSIEWCYT	10	Unmodified	_QLGSIEWCYT_					0	0	0			REV__ENST00000528897.1_1_8:11302137-11302787:-|nuORF	REV__ENST00000528897.1_1_8:11302137-11302787:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	600.2715454101562	2	600.273706	1198.53286	-5.4229	-0.0032552	2.5035	0.0015028	-2.9194	-0.0017524	600.2750319043287	159.18	1.1999	158.96	158.63	159.83	-0.22697					79	23	5	0	0	0	0.74374	1	16244	16244		25.574	1.0549	1	203880	+		45798	27179	37926	37949	49254	49254					-0.058465283622808784
QLGSILFQV	9	Unmodified	_QLGSILFQV_					0	0	0			REV__ENST00000526104.5_2_11:214381-214642:+|nuORF	REV__ENST00000526104.5_2_11:214381-214642:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.811767578125	2	502.792392	1003.57023	1.4636	0.00073587	2.5669	0.0012906	4.0305	0.0020265	502.79340545081465	113.86	0.26838	113.86	113.7	113.97	0					8	5	2	0	0	0	0.027345	1	12986	12986		109.48	7.8776	1	88943	+		45799	27128	37927	37950	49255	49255					0.06858930965665877
QLGTASLDKI	10	Unmodified	_QLGTASLDKI_					0	0	0			REV__ENSG00000168333|ENST00000522267|PPDPFL	REV__ENSG00000168333|ENST00000522267|PPDPFL	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2883911132812	2	523.298039	1044.58152	-1.0249	-0.0005363	0.83954	0.00043933	-0.18532	-9.6976E-05	523.2984852290218	40.177	1.0362	40.177	39.63	40.666	0					34	22	2	0	0	0	0.026734	1	2398	2398		31.53	0	1	892950	+		45800	21364	37928	37951	49256	49256					0.061017082691250835
QLGVEVWDLK	10	Unmodified	_QLGVEVWDLK_					0	0	0			REV__ENSG00000174231|ENST00000304992|PRPF8	REV__ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.8240966796875	2	593.826963	1185.63937	0.17269	0.00010255	-3.5433	-0.0021041	-3.3707	-0.0020016	593.8247439826457	70.662	1.0198	70.662	70.369	71.389	0					48	25	4	0	0	0	0.027028	1	6828	6828		24.519	0	1	4093000	+		45801	21818	37929	37952	49257	49257					0.05397970194553636
QLGVINLDL	9	Unmodified	_QLGVINLDL_					0	0	0			REV__ENSG00000188649|ENST00000646931|CC2D2B	REV__ENSG00000188649|ENST00000646931|CC2D2B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.324462890625	2	492.78985	983.565146	-0.38144	-0.00018797	1.177	0.00058001	0.79555	0.00039204	492.7896127024118	80.053	0.68681	77.301	77.13	77.817	-2.7514					18	13	2	0	0	0	0.027453	1	6565	6565		37.812	2.1932	1	66318	+		45802	22725	37930	37953	49258	49258					0.07270627103048355
QLHLKHLSM	9	Unmodified	_QLHLKHLSM_					0	0	0			REV__ENST00000305123.5_1_2:227600708-227600804:-|nuORF	REV__ENST00000305123.5_1_2:227600708-227600804:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.8273315429688	2	553.810593	1105.60663	2.0326	0.0011257	-3.3077	-0.0018318	-1.2751	-0.00070615	553.8086381691023	85.216	0.53915	85.216	84.963	85.502	0					18	12	2	0	0	0	0.027462	1	8970	8970		25.574	0	1	297290	+		45803	24282	37931	37954	49259	49259					0.05805484590700871
QLHNKNRKL	9	Unmodified	_QLHNKNRKL_					0	0	0			REV__nc|ENSG00000101251|Q5TEA6-2|SEL1L2	REV__nc|ENSG00000101251|Q5TEA6-2|SEL1L2	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8429565429688	2	575.843813	1149.67307	-2.8608	-0.0016474	1.7444	0.0010045	-1.1164	-0.00064289	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.6653	1	14506	14506		24.203	2.2429	1	356230	+		45804	28772	37932	37955	49260	49260					0.10422436476960684
QLHRRLEA	8	Unmodified	_QLHRRLEA_					0	0	0			REV__nc|ENSG00000149639|O94964-4|MTCL2	REV__nc|ENSG00000149639|O94964-4|MTCL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.2466430664062	2	511.796332	1021.57811	2.0696	0.0010592	-4.3656	-0.0022343	-2.296	-0.0011751	511.7939109872246	76.62	0.44191	76.62	76.48	76.922	0					22	10	3	0	0	0	0.028476	1	7718	7718		38.806	6.8513	1	820740	+		45805	20174	37933	37956	49261	49261					0.06818503005797538
QLIAHTENL	9	Unmodified	_QLIAHTENL_					0	0	0			REV__tr|A0A553SIV7|A0A553SIV7_NIACIFlagellinOS=NialliacirculansOX=1397GN=CEQ21_15610PE=3SV=1	REV__tr|A0A553SIV7|A0A553SIV7_NIACIFlagellinOS=NialliacirculansOX=1397GN=CEQ21_15610PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.334716796875	2	519.782556	1037.55056	1.1141	0.00057909	2.4598	0.0012786	3.5739	0.0018577	519.783190522932	111.2	0.48782	111.2	110.85	111.33	0					15	10	2	0	0	0	0.027433	1	12646	12646		51.335	1.8939	1	93900	+		45806	29934	37934	37957	49262	49262					0.0332855495489639
QLIAHTENL	9	Unmodified	_QLIAHTENL_					0	0	0			REV__tr|A0A553SIV7|A0A553SIV7_NIACIFlagellinOS=NialliacirculansOX=1397GN=CEQ21_15610PE=3SV=1	REV__tr|A0A553SIV7|A0A553SIV7_NIACIFlagellinOS=NialliacirculansOX=1397GN=CEQ21_15610PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	519.782556	1037.55056	0.63424	0.00032967	3.3656	0.0017494	3.9998	0.002079	519.7844943276386	111.52	0.78777	111.38	111.18	111.96	-0.1396	0.05348	-0.00021913	NaN	51.335	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20721	+		45807	29934	37934	37957							0.0332855495489639
QLIAHTENL	9	Unmodified	_QLIAHTENL_					0	0	0			REV__tr|A0A553SIV7|A0A553SIV7_NIACIFlagellinOS=NialliacirculansOX=1397GN=CEQ21_15610PE=3SV=1	REV__tr|A0A553SIV7|A0A553SIV7_NIACIFlagellinOS=NialliacirculansOX=1397GN=CEQ21_15610PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	519.782556	1037.55056	-0.021223	-1.1031E-05	4.5126	0.0023455	4.4913	0.0023345	519.7854551801989	112.84	0.64236	111.4	111.21	111.85	-1.4461	0.071169	0.00097324	NaN	51.335	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24472	+		45808	29934	37934	37957							0.0332855495489639
QLIATNPTPTI	11	Unmodified	_QLIATNPTPTI_					0	0	0			REV__ENSG00000188786|ENST00000373036|MTF1	REV__ENSG00000188786|ENST00000373036|MTF1	MULTI-MSMS	OvCa9_classI_Rep2	2	584.8342895507812	2	584.832246	1167.64994	-0.066713	-3.9016E-05	3.2698	0.0019123	3.2031	0.0018733	584.8340142739406	109.22	1.6322	109.05	108.72	110.35	-0.17237					92	32	4	0	0	0	0.55686	1	10284	10284		48.602	0.94422	1	327440	+		45809	22738	37935	37958	49263	49263					0.07281952849007212
QLIAVGIRF	9	Unmodified	_QLIAVGIRF_					0	0	0			REV__ENSG00000117597|ENST00000491415|UTP25	REV__ENSG00000117597|ENST00000491415|UTP25	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.7867431640625	2	508.816202	1015.61785	-0.98909	-0.00050326	-1.4457	-0.00073561	-2.4348	-0.0012389	508.8150354004552	80.523	0.87827	77.812	77.615	78.494	-2.7106					28	17	2	0	0	0	0.027462	1	6608	6608		17.365	0	1	20590	+		45810	18360	37936	37959	49264	49264					0.11066629956508223
QLIAVGIRF	9	Unmodified	_QLIAVGIRF_					0	0	0			REV__ENSG00000117597|ENST00000491415|UTP25	REV__ENSG00000117597|ENST00000491415|UTP25	MULTI-MATCH	OvCa9_classI_Rep3	3		2	508.816202	1015.61785	-0.42586	-0.00021668	-1.318	-0.00067062	-1.7439	-0.0008873	508.81536521341076	80.464	1.8278	78.141	77.629	79.457	-2.3226	0.16443	2.8555E-05	NaN	11.511	52	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27221	+		45811	18360	37936	37959							0.11066629956508223
QLICVRKRLV	10	Unmodified	_QLICVRKRLV_					0	0	0			REV__L1MA1_dup882|chr3:174894625-174897831:+|1.387705056550523|0.3345806313734131|2.05|429.0|208|3|anti-sense	REV__L1MA1_dup882|chr3:174894625-174897831:+|1.387705056550523|0.3345806313734131|2.05|429.0|208|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	614.3853759765625	2	614.389542	1226.76453	-4.8757	-0.0029956	-2.3105	-0.0014195	-7.1861	-0.0044151	614.3879084256669	157.16	1.131	155.99	155.65	156.79	-1.1707					59	27	4	0	0	0	0.81992	1	13572	13572		16.473	0	1	104880	+		45812	28377	37937	37960	49265	49265					0.16021983849941535
QLIDKVWQL	9	Unmodified	_QLIDKVWQL_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;ENST00000587491.5_1_17:75207779-75210102:+|nuORF	nc|ENSG00000129657|Q92503-3|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	MULTI-MSMS	OvCa99_classI_Rep5	1	571.8338012695312	2	571.832049	1141.64954	2.3174	0.0013252	-0.082644	-4.7258E-05	2.2348	0.0012779	571.8318995544461	121.08	1.4811	121.08	120.74	122.22	0					101	32	5	0	0	0	0.0094273	3	13933	13910;13933;13958		171.53	49.356	1	6062800			45813	3941	37938	37961	49266;49267;49268	49267					0.08438577919810086
QLIDKVWQL	9	Unmodified	_QLIDKVWQL_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;ENST00000587491.5_1_17:75207779-75210102:+|nuORF	nc|ENSG00000129657|Q92503-3|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	MULTI-MSMS	OvCa9_classI_Rep3	3	571.8326416015625	2	571.832049	1141.64954	0.89398	0.00051121	-0.52008	-0.0002974	0.3739	0.00021381	571.8314012597708	122.11	1.0486	121.08	120.85	121.9	-1.0286					49	19	4	0	0	0	0.29519	1	9386	9386		63.534	6.8128	1	119370			45814	3941	37938	37961	49269	49269					0.08438577919810086
QLIEGEFWWT	10	Unmodified	_QLIEGEFWWT_					0	0	0			REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	MULTI-MSMS	OvCa9_classI_Rep2	2	436.8801574707031	3	436.880156	1307.61864	-0.45155	-0.00019727	2.4481	0.0010695	1.9966	0.00087225	436.881173818463	63.641	2.8431	60.896	60.427	63.27	-2.7444					115	54	3	0	0	0	0.10592	4	4816	4816;4823;4829;4837		112.11	45.187	1	516020	+		45815	20754	37939	37962	49270;49271;49272;49273	49270					-0.022866201851002188
QLIEGEFWWT	10	Unmodified	_QLIEGEFWWT_					0	0	0			REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.8818359375	3	436.880156	1307.61864	0.53922	0.00023558	1.4791	0.0006462	2.0184	0.00088178	436.8807106194929	64.484	1.8437	61.008	60.783	62.626	-3.476					88	37	3	0	0	0	0.22073	2	4595	4595;4607		91.265	21.447	1	816980	+		45816	20754	37939	37962	49274;49275	49274					-0.022866201851002188
QLIGGPSRQL	10	Unmodified	_QLIGGPSRQL_					0	0	0		tr|A0A553ST71|A0A553ST71_NIACIOPTfamilyoligopeptidetransporterOS=NialliacirculansOX=1397GN=CEQ21_04365PE=4SV=1	tr|A0A553ST71|A0A553ST71_NIACIOPTfamilyoligopeptidetransporterOS=NialliacirculansOX=1397GN=CEQ21_04365PE=4SV=1	tr|A0A553ST71|A0A553ST71_NIACIOPTfamilyoligopeptidetransporterOS=NialliacirculansOX=1397GN=CEQ21_04365PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	534.8115844726562	2	534.811648	1067.60874	-0.41858	-0.00022386	-1.4796	-0.00079128	-1.8981	-0.0010151	534.8107466727284	92.27	1.7258	90.246	89.839	91.565	-2.0241					96	35	4	0	0	0	0.22511	1	5826	5826		90.601	2.9044	1	2468600			45817	34464	37940	37963	49276	49276					0.07764236600178265
QLIGIQDGYL	10	Unmodified	_QLIGIQDGYL_					0	0	0		ENSG00000132507|ENST00000336458|EIF5A;nc|ENSG00000132507|P63241-2|EIF5A;ENSG00000253626|ENST00000520547|EIF5AL1	ENSG00000132507|ENST00000336458|EIF5A	ENSG00000132507|ENST00000336458|EIF5A	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.8169555664062	2	560.305864	1118.59717	1.6748	0.00093842	0.72155	0.00040429	2.3964	0.0013427	560.3066689974318	155.3	0.6545	155.3	154.98	155.63	0					17	12	2	0	0	0	0.02706	1	18167	18167		37.812	21.805	1	20689			45818	4143	37941	37964	49277	49277					0.04261994786179457
QLIIPLKKD	9	Unmodified	_QLIIPLKKD_					0	0	0		tr|A0A553SK73|A0A553SK73_NIACITypeIIsecretionsystemproteinGspEOS=NialliacirculansOX=1397GN=CEQ21_18335PE=3SV=1	tr|A0A553SK73|A0A553SK73_NIACITypeIIsecretionsystemproteinGspEOS=NialliacirculansOX=1397GN=CEQ21_18335PE=3SV=1	tr|A0A553SK73|A0A553SK73_NIACITypeIIsecretionsystemproteinGspEOS=NialliacirculansOX=1397GN=CEQ21_18335PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.793212890625	2	534.344792	1066.67503	0.96781	0.00051714	-0.42335	-0.00022622	0.54446	0.00029093	534.3444865827698	151.04	0.60803	151.04	150.79	151.4	0					31	11	4	0	0	0	0.027462	1	17714	17714		16.473	1.6083	1	97664			45819	33588	37942	37965	49278	49278					0.1443605244223818
QLIKAIDKVSL	11	Unmodified	_QLIKAIDKVSL_					0	0	0		tr|A0A7D6ZIG6|A0A7D6ZIG6_9CLOTLatecompetencedevelopmentComFBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04095PE=4SV=1	tr|A0A7D6ZIG6|A0A7D6ZIG6_9CLOTLatecompetencedevelopmentComFBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04095PE=4SV=1	tr|A0A7D6ZIG6|A0A7D6ZIG6_9CLOTLatecompetencedevelopmentComFBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04095PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	614.3880004882812	2	614.387188	1226.75982	0.43005	0.00026422	-3.8473	-0.0023637	-3.4172	-0.0020995	614.3847038852094	162.45	0.39961	162.45	162.13	162.53	0					12	7	2	0	0	0	0.7046	1	19035	19035		28.081	2.5074	1	1935200			45820	35613	37943	37966	49279	49279					0.15551378188183662
QLIKTYTIL	9	Unmodified	_QLIKTYTIL_					0	0	0			REV__ENSG00000172209|ENST00000304402|GPR22	REV__ENSG00000172209|ENST00000304402|GPR22	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.7976684570312	2	546.8368	1091.65905	2.6378	0.0014424	-0.43214	-0.00023631	2.2056	0.0012061	546.836488111337	99.249	0.45171	99.249	99.036	99.488	0					22	10	3	0	0	0	0.027462	1	10962	10962		21.96	0	1	638880	+		45821	21681	37944	37967	49280	49280					0.11688346205346534
QLIKVILCP	9	Unmodified	_QLIKVILCP_					0	0	0		L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|179|1|anti-sense	L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|179|1|anti-sense	L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|179|1|anti-sense	MSMS	OvCa9_classI_Rep2	2	513.823974609375	2	513.822638	1025.63072	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.998	1	64.337	63.837	64.837	-2.661								0	0	0	0.18203	1	5217	5217		31.955	6.5047	1				45822	14713	37945	37968	49281	49281					0.11893325024402657
QLIKYEDI	8	Unmodified	_QLIKYEDI_					0	0	0		tr|A0A7D6ZIP8|A0A7D6ZIP8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07925PE=4SV=1	tr|A0A7D6ZIP8|A0A7D6ZIP8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07925PE=4SV=1	tr|A0A7D6ZIP8|A0A7D6ZIP8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07925PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.278564453125	2	511.281857	1020.54916	0.29442	0.00015053	-0.41348	-0.00021141	-0.11906	-6.0875E-05	511.28123569893836	113.37	0.77571	111.93	111.66	112.43	-1.4461					22	15	2	0	0	0	0.028476	1	10548	10548		29.15	0	1	84934			45823	35623	37946	37969	49282	49282					0.039709208661292905
QLILPEKLE	9	Unmodified	_QLILPEKLE_					0	0	0			REV__ENST00000256151.7_1_12:82746644-82746788:-|nuORF	REV__ENST00000256151.7_1_12:82746644-82746788:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.7926635742188	2	541.826432	1081.63831	1.2795	0.00069328	-2.8643	-0.001552	-1.5848	-0.00085869	541.8267854263936	109.76	1.3438	109.76	109.46	110.8	0					65	29	4	0	0	0	0.027411	1	12464	12464		58.23	5.2932	1	822220	+		45824	23888	37947	37970	49283	49283					0.10075755825687338
QLIMDEPRIN	10	Unmodified	_QLIMDEPRIN_					0	0	0		STX10|p.Q163Pfs*16|1|0.4|ENSG00000104915|chr19:13144854-13144855|-/GG|frameshift_variant	STX10|p.Q163Pfs*16|1|0.4|ENSG00000104915|chr19:13144854-13144855|-/GG|frameshift_variant	STX10|p.Q163Pfs*16|1|0.4|ENSG00000104915|chr19:13144854-13144855|-/GG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	615.8050537109375	2	614.821355	1227.62816	1.8238	0.0011213	-2.3855	-0.0014667	-0.56169	-0.00034534	614.8198346060205	77.823	0.38028	77.823	77.588	77.968	0					13	8	2	0	0	0	0.026681	1	7853	7853		44.377	18.803	1	356700			45825	32927	37948	37971	49284	49284					0.023448248287877504
QLIPALAKV	9	Unmodified	_QLIPALAKV_					0	0	0		NCOA3-EYA2|1|fusion;NCOA3-EYA2|5|fusion;NCOA3-EYA2|7|fusion;NCOA3-EYA2|3|fusion;ENSG00000064655|ENST00000327619|EYA2;CCDC85A-EYA2|1|fusion;nc|ENSG00000064655|O00167-2|EYA2;ENSG00000112319|ENST00000355286|EYA4;nc|ENSG00000112319|O95677-4|EYA4;nc|ENSG00000112319|O95677-2|EYA4;ENSG00000104313|ENST00000340726|EYA1;nc|ENSG00000112319|O95677-5|EYA4;nc|ENSG00000104313|Q99502-2|EYA1;nc|ENSG00000104313|Q99502-3|EYA1;ENST00000496494.5_1_8:72111577-72234167:-|nuORF;ZMYND8-EYA2|1|fusion;ZMYND8-EYA2|3|fusion;ZMYND8-EYA2|7|fusion;ZMYND8-EYA2|5|fusion	NCOA3-EYA2|1|fusion;ZMYND8-EYA2|1|fusion	ZMYND8-EYA2|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	476.8142395019531	2	476.813128	951.611703	-2.5884	-0.0012342	1.0162	0.00048456	-1.5722	-0.00074963	476.81346672602524	104.05	0.59826	104.05	103.85	104.45	0					28	13	3	0	0	0	0.33652	1	11659	11659		58.782	18.209	1	511090			45826	36318;15423	37949	37972	49285	49285					0.13396111724978255
QLIPRIKDL	9	Unmodified	_QLIPRIKDL_					0	0	0			REV__tr|A0A7D6ZMN6|A0A7D6ZMN6_9CLOTNifUfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12710PE=4SV=1	REV__tr|A0A7D6ZMN6|A0A7D6ZMN6_9CLOTNifUfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12710PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.3452758789062	2	548.347866	1094.68118	-2.9821	-0.0016352	-1.1105	-0.00060896	-4.0927	-0.0022442	548.3471290060427	150.24	1.502	148.8	148.37	149.88	-1.4344					77	33	4	0	0	0	0.6653	1	14836	14836		24.203	1.1603	1	132530	+		45827	32109	37950	37973	49286	49286					0.1376257067372535
QLIPYDIKTDA	11	Unmodified	_QLIPYDIKTDA_					0	0	0			REV__tr|A0A553SSK9|A0A553SSK9_NIACISrtBfamilysortaseOS=NialliacirculansOX=1397GN=srtBPE=4SV=1	REV__tr|A0A553SSK9|A0A553SSK9_NIACISrtBfamilysortaseOS=NialliacirculansOX=1397GN=srtBPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	638.8433837890625	2	638.84281	1275.67107	-0.72166	-0.00046103	1.7329	0.001107	1.0112	0.00064601	638.8438331848862	101.97	1.8306	100.44	99.845	101.68	-1.5211					95	34	5	0	0	0	0.56391	1	6980	6980		47.96	0	1	808980	+		45828	30845	37951	37974	49287	49287					0.044259181578581774
QLIRLIPE	8	Unmodified	_QLIRLIPE_					0	0	0		NUP133|p.G909Efs*40|1|0.06|ENSG00000069248|chr1:229460729-229460730|-/ATTCT|frameshift_variant;ENSG00000069248|ENST00000261396|NUP133	NUP133|p.G909Efs*40|1|0.06|ENSG00000069248|chr1:229460729-229460730|-/ATTCT|frameshift_variant	NUP133|p.G909Efs*40|1|0.06|ENSG00000069248|chr1:229460729-229460730|-/ATTCT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	492.3046875	2	491.30821	980.601866	1.4805	0.00072736	-1.4394	-0.00070718	0.041079	2.0183E-05	491.3073327565878	112.05	1.1832	110.95	110.6	111.78	-1.1038					40	23	2	0	0	0	0.028476	1	8220	8220		51.335	7.2187	1	111200			45829	1405	37952	37975	49288	49288					0.11078923719605882
QLIRLIPE	8	Unmodified	_QLIRLIPE_					0	0	0		NUP133|p.G909Efs*40|1|0.06|ENSG00000069248|chr1:229460729-229460730|-/ATTCT|frameshift_variant;ENSG00000069248|ENST00000261396|NUP133	NUP133|p.G909Efs*40|1|0.06|ENSG00000069248|chr1:229460729-229460730|-/ATTCT|frameshift_variant	NUP133|p.G909Efs*40|1|0.06|ENSG00000069248|chr1:229460729-229460730|-/ATTCT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.3067321777344	2	491.30821	980.601866	0.48401	0.0002378	-0.82999	-0.00040778	-0.34598	-0.00016999	491.30764191062303	112.49	1.0538	110.97	110.69	111.74	-1.5111					37	20	2	0	0	0	0.028476	1	10438	10438		49.442	7.0454	1	130720			45830	1405	37952	37975	49289	49289					0.11078923719605882
QLISWQTE	8	Unmodified	_QLISWQTE_					0	0	0			REV__ENSG00000130818|ENST00000253115|ZNF426	REV__ENSG00000130818|ENST00000253115|ZNF426	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.7502746582031	2	502.756007	1003.49746	-0.84814	-0.00042641	-3.3833	-0.001701	-4.2315	-0.0021274	502.75431619938104	49.571	0.43862	49.571	49.418	49.856	0					16	9	2	0	0	0	0.028476	1	3691	3691		19.36	0	1	736840	+		45831	18975	37953	37976	49290	49290					-0.004148228277699673
QLITFEIK	8	Unmodified	_QLITFEIK_					0	0	0		ENST00000163416.6_1_14:93263948-93264014:+|nuORF	ENST00000163416.6_1_14:93263948-93264014:+|nuORF	ENST00000163416.6_1_14:93263948-93264014:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.2431640625	2	496.294768	990.574983	0.050912	2.5267E-05	0.72327	0.00035895	0.77418	0.00038422	496.2949398001921	105.44	0.48038	105.44	105.22	105.7	0					15	10	2	0	0	0	0.028476	1	11824	11824		53.351	0	1	242620			45832	9636	37954	37977	49291	49291					0.07931815108429419
QLIWPFVP	8	Unmodified	_QLIWPFVP_					0	0	0			REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	REV__nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.82794189453125	2	500.286746	998.558939	-0.84668	-0.00042358	-2.6248	-0.0013132	-3.4715	-0.0017368	500.2853866602008	74.327	1.8285	72.356	71.325	73.154	-1.9711					47	34	2	0	0	0	0.028476	1	6029	6029		28.254	17.389	1	123640	+		45833	28906	37955	37978	49292	49292					0.059601536621812556
QLKADSRLK	9	Unmodified	_QLKADSRLK_					0	0	0		ENST00000471751.5_1_3:125166625-125239024:-|nuORF;ENSG00000114520|ENST00000251775|SNX4;nc|ENSG00000114520|O95219-2|SNX4	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	529.8202514648438	2	529.819473	1057.62439	-0.17077	-9.0478E-05	0.34275	0.00018159	0.17197	9.1115E-05	529.8192100040762	44.909	0.62583	44.909	44.706	45.332	0					28	13	3	0	0	0	0.1804	1	3071	3071		79.713	2.866	1	682240			45834	3025	37956	37979	49293	49293					0.0978852311720857
QLKCDRLSL	9	Unmodified	_QLKCDRLSL_					0	0	0			REV__ENSG00000142632|ENST00000270747|ARHGEF19	REV__ENSG00000142632|ENST00000270747|ARHGEF19	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.3165283203125	2	538.300059	1074.58556	1.3095	0.00070492	-3.1065	-0.0016722	-1.797	-0.00096732	538.2992131219237	71.698	0.29813	69.096	68.932	69.23	-2.6023					8	5	2	0	0	0	0.027017	1	3361	3361		82.241	0	1	13314	+		45835	19798	37957	37980	49294	49294					0.051254744912057504
QLKCHFLGR	9	Unmodified	_QLKCHFLGR_					0	0	0		ENST00000316024.9_2_17:7590934-7591339:+|nuORF	ENST00000316024.9_2_17:7590934-7591339:+|nuORF	ENST00000316024.9_2_17:7590934-7591339:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.2899169921875	2	551.302936	1100.59132	-0.017531	-9.6651E-06	3.6698	0.0020232	3.6523	0.0020135	551.3036061579558	57.432	1.1006	57.432	57.093	58.194	0					44	25	4	0	0	0	0.027462	1	4908	4908		21.96	5.4867	1	740970			45836	10338	37958	37981	49295	49295					0.045046177935319065
QLKDGRRKLE	10	Unmodified	_QLKDGRRKLE_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1;REV__ENST00000367256.9_1_6:152443573-152639413:-|nuORF	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	621.8439331054688	2	621.867486	1241.72042	-0.89017	-0.00055357	0.46026	0.00028622	-0.42991	-0.00026735	621.8677068658258	40.942	0.52006	37.988	37.685	38.205	-2.9541					10	9	2	0	0	0	0.026618	1	1780	1780		45.972	0	1	10671	+		45837	18991;24893	37959	37982	49296	49296					0.10922670957324954
QLKDYHISP	9	Unmodified	_QLKDYHISP_					0	0	0		tr|A0A7D6ZSM0|A0A7D6ZSM0_9CLOTType1glutamineamidotransferase-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08385PE=3SV=1	tr|A0A7D6ZSM0|A0A7D6ZSM0_9CLOTType1glutamineamidotransferase-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08385PE=3SV=1	tr|A0A7D6ZSM0|A0A7D6ZSM0_9CLOTType1glutamineamidotransferase-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08385PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.8063354492188	2	550.790381	1099.56621	-1.1795	-0.00064965	1.1926	0.00065686	0.013074	7.2012E-06	550.7909727750393	50.773	0.66056	47.599	47.412	48.072	-3.1734					18	12	3	0	0	0	0.027433	1	2921	2921		54.776	0	1	23160			45838	35741	37960	37983	49297	49297					0.02040841471944077
QLKDYLKTH	9	Unmodified	_QLKDYLKTH_					0	0	0		tr|A0A553SF93|A0A553SF93_NIACISugarphosphateisomerase/epimeraseOS=NialliacirculansOX=1397GN=CEQ21_08485PE=4SV=1	tr|A0A553SF93|A0A553SF93_NIACISugarphosphateisomerase/epimeraseOS=NialliacirculansOX=1397GN=CEQ21_08485PE=4SV=1	tr|A0A553SF93|A0A553SF93_NIACISugarphosphateisomerase/epimeraseOS=NialliacirculansOX=1397GN=CEQ21_08485PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	573.3175048828125	2	573.319306	1144.62406	-0.087449	-5.0136E-05	-3.5866	-0.0020563	-3.6741	-0.0021064	573.317293845413	32.479	0.59043	32.479	32.254	32.844	0					27	11	4	0	0	0	0.1804	1	1418	1418		79.713	4.6693	1	400890			45839	33008	37961	37984	49298	49298					0.05753103397364612
QLKEDYRLV	9	Unmodified	_QLKEDYRLV_					0	0	0			REV__nc|ENSG00000241484|P85298-2|ARHGAP8	REV__nc|ENSG00000241484|P85298-2|ARHGAP8	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.7879028320312	2	582.324588	1162.63462	-0.63059	-0.00036721	0.096618	5.6263E-05	-0.53398	-0.00031095	582.3244441073502	68.545	0.91428	68.545	68.192	69.106	0					45	21	3	0	0	0	0.027462	1	6490	6490		37.159	12.956	1	2550900	+		45840	23448	37962	37985	49299	49299					0.05981086051792772
QLKEDYRLV	9	Unmodified	_QLKEDYRLV_					0	0	0			REV__nc|ENSG00000241484|P85298-2|ARHGAP8	REV__nc|ENSG00000241484|P85298-2|ARHGAP8	MULTI-MATCH	OvCa9_classI_Rep2	2		2	582.324588	1162.63462	0.33804	0.00019685	-6.9708	-0.0040593	-6.6328	-0.0038624	582.321217607274	71.18	0.57732	68.673	68.385	68.963	-2.5071	0.0076529	-0.0076094	NaN	42.396	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22929	+		45841	23448	37962	37985							0.05981086051792772
QLKEDYRLV	9	Unmodified	_QLKEDYRLV_					0	0	0			REV__nc|ENSG00000241484|P85298-2|ARHGAP8	REV__nc|ENSG00000241484|P85298-2|ARHGAP8	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	582.324588	1162.63462	-1.9249	-0.0011209	-1.4464	-0.00084228	-3.3713	-0.0019632	582.3248666113864	72.234	0.48874	68.777	68.656	69.144	-3.4563	0.11256	-0.0011754	NaN	42.396	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30866	+		45842	23448	37962	37985							0.05981086051792772
QLKEEIAFLK	10	Unmodified	_QLKEEIAFLK_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	OvCa9_classI_Rep2	2	407.5797119140625	3	406.907934	1217.70197	0.59726	0.00024303	-2.4531	-0.00099819	-1.8559	-0.00075516	406.9071080932573	57.364	0.74487	54.572	54.377	55.122	-2.7921					23	14	2	0	0	0	0.026519	1	4155	4155		59.931	6.3339	1	22359			45843	1348	37963	37986	49300	49300					0.10183116262737713
QLKERIAGLE	10	Unmodified	_QLKERIAGLE_					0	0	0		nc|ENSG00000173230|Q14789-4|GOLGB1;nc|ENSG00000173230|Q14789-3|GOLGB1;nc|ENSG00000173230|Q14789|GOLGB1;ENSG00000173230|ENST00000614479|GOLGB1;nc|ENSG00000173230|Q14789-2|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	nc|ENSG00000173230|Q14789-4|GOLGB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.7719116210938	2	578.837862	1155.66117	1.5674	0.00090729	1.6131	0.00093372	3.1805	0.001841	578.8391972671997	108.66	0.21782	108.66	108.54	108.76	0					6	4	2	0	0	0	0.027056	1	12292	12292		35.618	20.753	1	135580			45844	7361	37964	37987	49301	49301					0.08956774943135315
QLKETNEIN	9	Unmodified	_QLKETNEIN_					0	0	0			REV__nc|ENSG00000139182|Q9BQT9-2|CLSTN3	REV__nc|ENSG00000139182|Q9BQT9-2|CLSTN3	MULTI-SECPEP	OvCa9_classI_Rep3	3	544.821044921875	2	544.782753	1087.55095	-0.70261	-0.00038277	-0.79748	-0.00043445	-1.5001	-0.00081722	545.2837208015445	90.151	0.82023	88.07	87.541	88.361	-2.0805					19	15	2	0	0	0	0.027462	1	5527	5527		22.58	5.8623	1	36379	+		45845	19595	37965	37988	49302	49302					0.010679298841068885
QLKGKKPP	8	Unmodified	_QLKGKKPP_					0	0	0		ENSG00000196526|ENST00000420658|AFAP1;ENST00000513842.1_1_4:7765494-7800689:-|nuORF;ENST00000505447.5_1_4:7765494-7780765:-|nuORF	ENSG00000196526|ENST00000420658|AFAP1	ENSG00000196526|ENST00000420658|AFAP1	MULTI-SECPEP	OvCa9_classI_Rep3	3	449.2694091796875	2	448.28982	894.565087	1.4262	0.00063936	-1.2753	-0.00057172	0.15088	6.7639E-05	448.28905002644444	113.04	1.2113	111.97	111.66	112.87	-1.0753					43	23	3	0	0	0	0.028476	1	8332	8332		50.025	12.865	1	61743			45846	8620	37966	37989	49303	49303					0.11358671893697192
QLKHCNGILK	10	Unmodified	_QLKHCNGILK_					0	0	0		BRD2|p.K363*|1|0.4|ENSG00000204256|chr6:32976821-32976822|-/T|frameshift_variant;nc|ENSG00000204256|P25440-4|BRD2;nc|ENSG00000204256|P25440-3|BRD2;ENSG00000204256|ENST00000374825|BRD2;nc|ENSG00000204256|P25440-2|BRD2	BRD2|p.K363*|1|0.4|ENSG00000204256|chr6:32976821-32976822|-/T|frameshift_variant	BRD2|p.K363*|1|0.4|ENSG00000204256|chr6:32976821-32976822|-/T|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.2579345703125	2	577.32915	1152.64375	0.96398	0.00055654	0.92611	0.00053467	1.8901	0.0010912	577.3296278991791	143.73	1.5762	143.73	143.02	144.6	0					47	31	2	0	0	0	0.027021	1	16827	16827		15.642	0	1	34031			45847	158	37967	37990	49304	49304					0.07353156136468897
QLKKAEKKLQD	11	Unmodified	_QLKKAEKKLQD_					0	0	0		ENSG00000165972|ENST00000344280|CCDC38	ENSG00000165972|ENST00000344280|CCDC38	ENSG00000165972|ENST00000344280|CCDC38	MULTI-SECPEP	OvCa9_classI_Rep4_	4	444.22869873046875	3	443.601393	1327.78235	-0.68713	-0.00030481	1.1667	0.00051754	0.47955	0.00021273	443.60216599926775	48.478	0.62042	45.37	45.141	45.761	-3.1077					17	11	2	0	0	0	0.026068	1	2655	2655		27.644	11.114	1	10592			45848	6623	37968	37991	49305	49305					0.13156977585799723
QLKKAEKKLQD	11	Unmodified	_QLKKAEKKLQD_					0	0	0		ENSG00000165972|ENST00000344280|CCDC38	ENSG00000165972|ENST00000344280|CCDC38	ENSG00000165972|ENST00000344280|CCDC38	MULTI-MATCH	OvCa9_classI_Rep2	2		3	443.601393	1327.78235	0.98751	0.00043806	-1.4298	-0.00063426	-0.4423	-0.0001962	443.6011503476758	48.065	0.24762	45.355	45.281	45.529	-2.7097	-0.0074798	-0.002654	NaN	21.78	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6806.4			45849	6623	37968	37991							0.13156977585799723
QLKKGKTTSQT	11	Unmodified	_QLKKGKTTSQT_					0	0	0		tr|A0A553SP32|A0A553SP32_NIACIChromosomepartitionproteinSmcOS=NialliacirculansOX=1397GN=smcPE=3SV=1	tr|A0A553SP32|A0A553SP32_NIACIChromosomepartitionproteinSmcOS=NialliacirculansOX=1397GN=smcPE=3SV=1	tr|A0A553SP32|A0A553SP32_NIACIChromosomepartitionproteinSmcOS=NialliacirculansOX=1397GN=smcPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.2238464355469	3	407.238343	1218.6932	0.7999	0.00032575	4.0592	0.0016531	4.8591	0.0019788	407.23992433528065	41.279	1.0121	41.279	40.969	41.982	0					51	22	4	0	0	0	0.026089	1	2622	2622		7.3413	1.3403	1	494810			45850	33998	37969	37992	49306	49306					0.09260142626271772
QLKKIEDL	8	Unmodified	_QLKKIEDL_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	OvCa99_classI_Rep5	1	493.7975158691406	2	493.797675	985.580796	-0.22136	-0.00010931	-0.098355	-4.8568E-05	-0.31971	-0.00015787	493.7975349354123	51.296	0.46497	51.296	51.12	51.585	0					25	10	3	0	0	0	0.38598	1	3947	3947		90.777	0	1	1019000			45851	8736	37970	37993	49307	49307					0.08742913620085346
QLKKIEDL	8	Unmodified	_QLKKIEDL_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	493.797675	985.580796	-0.67139	-0.00033153	-0.28761	-0.00014202	-0.959	-0.00047355	493.79737757259716	54.462	1.1972	51.648	51.175	52.372	-2.8139	0.17558	-0.00014674	NaN	90.777	27	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29231			45852	8736	37970	37993							0.08742913620085346
QLKKLQDKI	9	Unmodified	_QLKKLQDKI_					0	0	0		nc|ENSG00000100266|Q9UNF0-2|PACSIN2;ENSG00000100266|ENST00000263246|PACSIN2	nc|ENSG00000100266|Q9UNF0-2|PACSIN2	nc|ENSG00000100266|Q9UNF0-2|PACSIN2	MULTI-MSMS	OvCa99_classI_Rep5	1	557.35302734375	2	557.353148	1112.69174	0.070148	3.9097E-05	0.077531	4.3212E-05	0.14768	8.2309E-05	557.3530734080443	40.816	0.57521	40.816	40.619	41.195	0					34	12	4	0	0	0	0.3076	1	2503	2503		62.107	1.9892	1	929310			45853	2036	37971	37994	49308	49308					0.13990553328176247
QLKKPKRG	8	Unmodified	_QLKKPKRG_					0	0	0			REV__ENSG00000146247|ENST00000275034|PHIP	REV__ENSG00000146247|ENST00000275034|PHIP	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.7827453613281	2	477.813993	953.613434	-0.77889	-0.00037217	0.27883	0.00013323	-0.50006	-0.00023894	477.8139637284568	66.042	0.30664	66.042	65.867	66.174	0					12	7	2	0	0	0	0.028476	1	6102	6102		7.6903	0	1	326350	+		45854	20002	37972	37995	49309	49309					0.13477165533606694
QLKKVDNSQ	9	Unmodified	_QLKKVDNSQ_					0	0	0			REV__tr|A0A7D6VU59|A0A7D6VU59_9CLOTThymidylatesynthaseOS=ClostridiumintestinaleOX=36845GN=thyAPE=3SV=1	REV__tr|A0A7D6VU59|A0A7D6VU59_9CLOTThymidylatesynthaseOS=ClostridiumintestinaleOX=36845GN=thyAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	530.2930297851562	2	530.293288	1058.57202	-0.57106	-0.00030283	0.21307	0.00011299	-0.35799	-0.00018984	530.2932941647349	44.621	1.194	41.912	41.603	42.797	-2.7097					53	23	3	0	0	0	0.26076	1	2569	2569		67.494	3.9598	1	328810	+		45855	31653	37973	37996	49310	49310					0.04507939983614051
QLKLLQKLDHY	11	Unmodified	_QLKLLQKLDHY_					0	0	0		ENSG00000138399|ENST00000453153|FASTKD1;nc|ENSG00000138399|Q53R41-2|FASTKD1	ENSG00000138399|ENST00000453153|FASTKD1	ENSG00000138399|ENST00000453153|FASTKD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	467.25775146484375	3	466.941638	1397.80309	-0.83998	-0.00039222	-2.3825	-0.0011125	-3.2225	-0.0015047	466.9406997169507	54.408	1.0254	51.16	50.876	51.901	-3.2474					53	19	5	0	0	0	0.025864	1	3347	3347		22.562	0.78116	1	106330			45856	4684	37974	37997	49311	49311					0.12009567965446877
QLKLVKNGR	9	Unmodified	_QLKLVKNGR_					0	0	0		tr|A0A553SIY8|A0A553SIY8_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_15750PE=4SV=1	tr|A0A553SIY8|A0A553SIY8_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_15750PE=4SV=1	tr|A0A553SIY8|A0A553SIY8_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_15750PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.313720703125	2	528.337833	1054.66111	-0.66817	-0.00035302	-4.0418	-0.0021355	-4.71	-0.0024885	528.3352997019163	74.367	0.29681	71.956	71.747	72.043	-2.4106					8	5	2	0	0	0	0.027462	1	3668	3668		16.473	0	1	14736			45857	33441	37975	37998	49312	49312					0.13596819733788834
QLKPCHISL	9	Unmodified	_QLKPCHISL_					0	0	0			REV__ENST00000422741.5_1_3:33414627-33427097:+|nuORF	REV__ENST00000422741.5_1_3:33414627-33427097:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.79345703125	2	519.791869	1037.56919	-0.39548	-0.00020557	4.0333	0.0020965	3.6378	0.0018909	519.7938318646319	121.84	4.0005	120.49	119.9	123.9	-1.3479					152	78	4	0	0	0	0.33652	1	11556	11556		58.782	5.4305	1	769080	+		45858	20343	37976	37999	49313	49313					0.05190393325119658
QLKPTKILI	9	Unmodified	_QLKPTKILI_					0	0	0			REV__ENST00000368194.7_1_1:156955959-157014261:-|nuORF	REV__ENST00000368194.7_1_1:156955959-157014261:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.3573608398438	2	527.35516	1052.69577	0.64821	0.00034183	-0.077186	-4.0705E-05	0.57102	0.00030113	527.3550440559598	85.182	2.5141	82.536	82.215	84.729	-2.6463					145	50	5	0	0	0	0.10363	1	7202	7202		96.19	0	1	2786200	+		45859	24915	37977	38000	49314	49314					0.17152642821906738
QLKRAEDV	8	Unmodified	_QLKRAEDV_					0	0	0		tr|A0A553SH85|A0A553SH85_NIACISmallribosomalsubunitproteinuS5OS=NialliacirculansOX=1397GN=rpsEPE=3SV=1	tr|A0A553SH85|A0A553SH85_NIACISmallribosomalsubunitproteinuS5OS=NialliacirculansOX=1397GN=rpsEPE=3SV=1	tr|A0A553SH85|A0A553SH85_NIACISmallribosomalsubunitproteinuS5OS=NialliacirculansOX=1397GN=rpsEPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.7967529296875	2	479.769448	957.524344	2.1176	0.001016	0.14874	7.1359E-05	2.2664	0.0010873	479.76933023386914	82.098	0.4995	82.098	81.895	82.394	0					18	11	2	0	0	0	0.028476	1	8464	8464		6.7355	0	1	430420			45860	33248	37978	38001	49315	49315					0.043882857834205424
QLKRIEKL	8	Unmodified	_QLKRIEKL_					0	0	0			REV__ENST00000472719.5_1_2:27008929-27016144:+|nuORF	REV__ENST00000472719.5_1_2:27008929-27016144:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	514.3344116210938	2	514.334759	1026.65496	0.071429	3.6738E-05	-0.61853	-0.00031813	-0.5471	-0.00028139	514.3343364267903	46.334	0.65002	46.334	46.069	46.719	0					24	14	2	0	0	0	0.56195	1	3265	3265		71.296	0	1	1665200	+		45861	18223	37979	38002	49316	49316					0.14270301502278926
QLKRPLIS	8	Unmodified	_QLKRPLIS_					0	0	0			REV__ENSG00000146966|ENST00000496613|DENND2A	REV__ENSG00000146966|ENST00000496613|DENND2A	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.7851867675781	2	477.808377	953.6022	-1.3614	-0.00065049	1.0339	0.00049403	-0.32747	-0.00015647	477.80860348060924	52.555	0.5908	49.742	49.543	50.134	-2.8129					15	11	2	0	0	0	0.028476	1	3529	3529		47.916	0	1	15072	+		45862	20036	37980	38003	49317	49317					0.12354343439471904
QLKRSLELK	9	Unmodified	_QLKRSLELK_					0	0	0			REV__CDC42BPB|p.S1423Ffs*2|1|0.11|ENSG00000198752|chr14:102944030-102944031|AG/-|frameshift_variant;REV__nc|ENSG00000143776|Q5VT25-3|CDC42BPA	REV__CDC42BPB|p.S1423Ffs*2|1|0.11|ENSG00000198752|chr14:102944030-102944031|AG/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	558.817626953125	2	557.850773	1113.68699	0.0012657	7.0608E-07	-1.52	-0.00084795	-1.5188	-0.00084725	557.8506091064213	46.051	1.2973	42.978	42.613	43.911	-3.0724					58	24	4	0	0	0	0.027453	1	2439	2439		54.776	3.4409	1	126800	+		45863	15764;19867	37981	38004	49318	49318					0.1346966918540602
QLKTHLSYI	9	Unmodified	_QLKTHLSYI_					0	0	0			REV__ENSG00000128513|ENST00000357628|POT1	REV__ENSG00000128513|ENST00000357628|POT1	MULTI-MSMS	OvCa99_classI_Rep5	1	551.8195190429688	2	551.816399	1101.61824	1.041	0.00057447	1.3477	0.00074369	2.3888	0.0013182	551.8168622861101	91.084	0.60232	91.084	90.857	91.459	0					32	14	3	0	0	0	0.37135	1	9794	9794		54.776	1.8396	1	1647800	+		45864	18855	37982	38005	49319	49319					0.07150004885693306
QLKVNLQP	8	Unmodified	_QLKVNLQP_					0	0	0		ENSG00000164309|ENST00000446378|CMYA5;ENST00000506603.5_1_5:79058805-79095436:+|nuORF	ENSG00000164309|ENST00000446378|CMYA5;ENST00000506603.5_1_5:79058805-79095436:+|nuORF	ENSG00000164309|ENST00000446378|CMYA5	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.28338623046875	2	470.284734	938.554916	0.68757	0.00032335	0.46249	0.0002175	1.1501	0.00054085	470.2846750298588	81.217	0.50301	81.217	80.91	81.413	0					20	11	2	0	0	0	0.028476	1	8341	8341		25.45	7.1258	1	383950			45865	6445;12912	37983	38006	49320	49320					0.08318064168463479
QLKVRGFNKKY	11	Unmodified	_QLKVRGFNKKY_					0	0	0		tr|A0A7D6VVT8|A0A7D6VVT8_9CLOTDUF4116domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06385PE=4SV=1	tr|A0A7D6VVT8|A0A7D6VVT8_9CLOTDUF4116domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06385PE=4SV=1	tr|A0A7D6VVT8|A0A7D6VVT8_9CLOTDUF4116domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06385PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	460.9398498535156	3	460.941861	1379.80375	0.9912	0.00045688	-4.1734	-0.0019237	-3.1822	-0.0014668	460.939931944109	66.339	1.2721	63.393	62.959	64.231	-2.9459					62	24	4	0	0	0	0.72069	1	2719	2719		22.562	3.2989	1	124720			45866	35235	37984	38007	49321	49321					0.12904407405153506
QLKVRGFNKKY	11	Unmodified	_QLKVRGFNKKY_					0	0	0		tr|A0A7D6VVT8|A0A7D6VVT8_9CLOTDUF4116domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06385PE=4SV=1	tr|A0A7D6VVT8|A0A7D6VVT8_9CLOTDUF4116domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06385PE=4SV=1	tr|A0A7D6VVT8|A0A7D6VVT8_9CLOTDUF4116domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06385PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	460.941861	1379.80375	1.0128	0.00046686	-4.2251	-0.0019475	-3.2122	-0.0014807	460.93986246640407	65.975	0.99265	63.279	62.972	63.965	-2.6958	-0.096719	-0.00026603	NaN	22.562	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66667			45867	35235	37984	38007							0.12904407405153506
QLKVRGFNKKY	11	Unmodified	_QLKVRGFNKKY_					0	0	0		tr|A0A7D6VVT8|A0A7D6VVT8_9CLOTDUF4116domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06385PE=4SV=1	tr|A0A7D6VVT8|A0A7D6VVT8_9CLOTDUF4116domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06385PE=4SV=1	tr|A0A7D6VVT8|A0A7D6VVT8_9CLOTDUF4116domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06385PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	460.941861	1379.80375	-0.19752	-9.1046E-05	-2.9136	-0.001343	-3.1111	-0.001434	460.9405165387396	66.946	0.93829	63.456	63.049	63.988	-3.4902	0.079591	0.0015475	NaN	22.562	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50321			45868	35235	37984	38007							0.12904407405153506
QLKVTAKNTV	10	Unmodified	_QLKVTAKNTV_					0	0	0		ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.P6706Tfs*18|1|0.25|ENSG00000154358|chr1:228370088-228370089|-/GA|frameshift_variant;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN	ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN	ENSG00000154358|ENST00000680850|OBSCN	MULTI-MSMS	OvCa9_classI_Rep2	2	551.33447265625	2	551.334956	1100.65536	2.0943	0.0011547	-2.1659	-0.0011941	-0.071538	-3.9442E-05	551.3336589332715	29.013	0.78313	26.304	26.096	26.88	-2.7097					37	16	3	0	0	0	0.762	1	668	668		23.523	2.5758	1	112050			45869	5731;15107	37985	38008	49322	49322					0.10905676431457323
QLKWEAAQNL	10	Unmodified	_QLKWEAAQNL_					0	0	0			REV__ENSG00000164440|ENST00000358430|TXLNB	REV__ENSG00000164440|ENST00000358430|TXLNB	MULTI-MSMS	OvCa99_classI_Rep5	1	400.8827819824219	3	400.8839	1199.62987	1.346	0.00053959	-4.2551	-0.0017058	-2.9091	-0.0011662	400.8821127624627	47.053	0.48492	47.053	46.809	47.294	0					19	10	2	0	0	0	0.62712	1	3353	3353		38.754	2.3069	1	1621800	+		45870	20989	37986	38009	49323	49323					0.03804201909042604
QLKWEAAQNL	10	Unmodified	_QLKWEAAQNL_					0	0	0			REV__ENSG00000164440|ENST00000358430|TXLNB	REV__ENSG00000164440|ENST00000358430|TXLNB	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	400.8839	1199.62987	1.346	0.00053959	-4.2551	-0.0017058	-2.9091	-0.0011662	400.8821127624627	47.053	0.48492	47.053	46.809	47.294	0	0.0039705	0.00024039	NaN	38.754	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1621800	+		45871	20989	37986	38009							0.03804201909042604
QLKWEAAQNL	10	Unmodified	_QLKWEAAQNL_					0	0	0			REV__ENSG00000164440|ENST00000358430|TXLNB	REV__ENSG00000164440|ENST00000358430|TXLNB	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	400.8839	1199.62987	0.42341	0.00016974	-9.6207	-0.0038568	-9.1973	-0.0036871	400.87846892461545	50.187	0.57225	47.045	46.767	47.34	-3.1416	-0.0039705	-0.0062126	NaN	38.754	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19360	+		45872	20989	37986	38009							0.03804201909042604
QLLAEKEMY	9	Unmodified	_QLLAEKEMY_					0	0	0		tr|A0A553SM26|A0A553SM26_NIACIPadRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21710PE=4SV=1	tr|A0A553SM26|A0A553SM26_NIACIPadRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21710PE=4SV=1	tr|A0A553SM26|A0A553SM26_NIACIPadRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21710PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	562.7849731445312	2	562.78645	1123.55835	1.5997	0.00090027	-2.8127	-0.0015829	-1.213	-0.00068266	562.7848227189371	124.49	1.0525	124.49	124.19	125.25	0					77	23	6	0	0	0	0.42676	1	14349	14349		49.442	2.9848	1	7931500			45873	33788	37987	38010	49324	49324					0.0015094616016995133
QLLAERPR	8	Unmodified	_QLLAERPR_					0	0	0			REV__ENST00000530891.3_1_15:85175130-85175559:+|nuORF	REV__ENST00000530891.3_1_15:85175130-85175559:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.306884765625	2	491.793258	981.571963	1.2065	0.00059333	-1.0245	-0.00050382	0.18201	8.951E-05	491.7924160201608	35.963	0.69932	33.114	32.94	33.639	-2.849					17	13	2	0	0	0	0.028476	1	1202	1202		47.657	12.457	1	24742	+		45874	24712	37988	38011	49325	49325					0.08043984774269575
QLLAFILAL	9	Unmodified	_QLLAFILAL_					0	0	0		ENSG00000171217|ENST00000367165|CLDN20	ENSG00000171217|ENST00000367165|CLDN20	ENSG00000171217|ENST00000367165|CLDN20	MULTI-SECPEP	OvCa9_classI_Rep2	2	502.29205322265625	2	501.323328	1000.6321	-1.1914	-0.00059726	0.91816	0.0004603	-0.27321	-0.00013697	501.32353494828874	121.58	0.94019	121.38	121.1	122.04	-0.19719					31	18	3	0	0	0	0.027462	1	11761	11761		33.516	3.0119	1	30906			45875	7184	37989	38012	49326	49326					0.13181282384800852
QLLAGLALPAV	11	Unmodified	_QLLAGLALPAV_					0	0	0		ENST00000556939.5_1_14:75415208-75421945:-|nuORF;nc|ENSG00000119630|P49763-2|PGF;ENSG00000119630|ENST00000555567|PGF;nc|ENSG00000119630|P49763|PGF;nc|ENSG00000119630|P49763-4|PGF	ENST00000556939.5_1_14:75415208-75421945:-|nuORF	ENST00000556939.5_1_14:75415208-75421945:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.2610473632812	2	533.336967	1064.65938	1.755	0.00093598	-0.21403	-0.00011415	1.5409	0.00082184	533.3368328211329	106.88	0.938	106.88	106.58	107.52	0					32	21	2	0	0	0	0.025234	1	12108	12108		29.15	1.2673	1	310280			45876	3375	37990	38013	49327	49327					0.1296376592517845
QLLARRGGL	9	Unmodified	_QLLARRGGL_					0	0	0			REV__nc|ENSG00000160460|Q9H254-2|SPTBN4	REV__nc|ENSG00000160460|Q9H254-2|SPTBN4	MULTI-MSMS	OvCa9_classI_Rep2	2	492.3105773925781	2	492.309075	982.603597	-0.45983	-0.00022638	3.5349	0.0017403	3.0751	0.0015139	492.31038804018607	102.28	1.8782	101.6	100.84	102.72	-0.68459					104	37	5	0	0	0	0.29717	2	9418	9418;9425		63.306	3.0123	1	571820	+		45877	20661	37991	38014	49328;49329	49328					0.11159977528222953
QLLASLLDGP	10	Unmodified	_QLLASLLDGP_					0	0	0			REV__ENSG00000139540|ENST00000454355|SLC39A5	REV__ENSG00000139540|ENST00000454355|SLC39A5	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.7755737304688	2	513.795132	1025.57571	1.5827	0.00081317	1.0784	0.00055408	2.6611	0.0013672	513.7950333616529	92.225	0.29108	92.225	92.052	92.343	0					9	6	2	0	0	0	0.026734	1	9949	9949		39.253	12.56	1	151170	+		45878	19616	37992	38015	49330	49330					0.06394609757489889
QLLCPRRS	8	Unmodified	_QLLCPRRS_					0	0	0			REV__ENST00000588450.1_1_19:2235749-2235866:-|nuORF	REV__ENST00000588450.1_1_19:2235749-2235866:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.3117980957031	2	486.774011	971.533469	1.2352	0.00060125	0.43788	0.00021315	1.673	0.00081439	486.77395692021645	109.37	0.39738	109.37	109.11	109.5	0					20	8	4	0	0	0	0.028476	1	12379	12379		33.516	6.7195	1	146880	+		45879	27887	37993	38016	49331	49331					0.0465635586811004
QLLDQVEQI	9	Unmodified	_QLLDQVEQI_					0	0	0		nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000158604|ENST00000457408|TMED4;nc|ENSG00000158604|Q7Z7H5-3|TMED4	nc|ENSG00000158604|Q7Z7H5-2|TMED4	nc|ENSG00000158604|Q7Z7H5-2|TMED4	MULTI-MSMS	OvCa9_classI_Rep3	3	543.2958374023438	2	543.295496	1084.57644	0.18675	0.00010146	-0.069989	-3.8025E-05	0.11676	6.3437E-05	543.2953440892359	118.73	1.3402	117.7	117.24	118.58	-1.0271					50	26	3	0	0	0	0.084918	3	8970	8965;8970;8976		101.25	23.935	1	104250			45880	5963	37994	38017	49332;49333;49334	49333					0.03753404406529626
QLLDQVEQI	9	Unmodified	_QLLDQVEQI_					0	0	0		nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000158604|ENST00000457408|TMED4;nc|ENSG00000158604|Q7Z7H5-3|TMED4	nc|ENSG00000158604|Q7Z7H5-2|TMED4	nc|ENSG00000158604|Q7Z7H5-2|TMED4	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.2947387695312	2	543.295496	1084.57644	-1.9696	-0.00107	2.4705	0.0013422	0.50094	0.00027216	543.2967504586788	118.95	1.1437	117.6	117.15	118.3	-1.3444					45	21	3	0	0	0	0.094616	2	11154	11154;11165		98.629	5.4339	1	121020			45881	5963	37994	38017	49335;49336	49335					0.03753404406529626
QLLEMKKRE	9	Unmodified	_QLLEMKKRE_					0	0	0		nc|ENSG00000130779|P30622-2|CLIP1;nc|ENSG00000130779|P30622-1|CLIP1;ENSG00000130779|ENST00000620786|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	588.8140869140625	2	587.834265	1173.65398	-0.19128	-0.00011244	0.53595	0.00031505	0.34467	0.00020261	587.8345972602094	56.501	2.1295	53.206	52.87	54.999	-3.2944					61	41	2	0	0	0	0.027462	1	3707	3707		39.253	6.4404	1	30249			45882	4015	37995	38018	49337	49337					0.07409719071051768
QLLENVKKE	9	Unmodified	_QLLENVKKE_					0	0	0			REV__tr|A0A553SRA1|A0A553SRA1_NIACISulfate/molybdateABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_00665PE=4SV=1	REV__tr|A0A553SRA1|A0A553SRA1_NIACISulfate/molybdateABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_00665PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.3515014648438	2	550.819138	1099.62372	-0.30983	-0.00017066	-1.9639	-0.0010818	-2.2738	-0.0012524	550.8180116359476	20.333	0.44711	18.994	18.762	19.209	-1.3386					13	8	2	0	0	0	0.027462	1	27	27		56.434	17.628	1	10971	+		45883	30711	37996	38019	49338	49338					0.07789683677515313
QLLETKLDQI	10	Unmodified	_QLLETKLDQI_					0	0	0			REV__ENSG00000102189|ENST00000322349|EEA1	REV__ENSG00000102189|ENST00000322349|EEA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	600.8189086914062	2	600.845353	1199.67615	2.1324	0.0012812	1.5474	0.00092975	3.6798	0.002211	600.8450980557653	87.228	1.1134	87.228	86.931	88.044	0					47	26	3	0	0	0	0.026923	1	9266	9266		41.427	7.505	1	935020	+		45884	17542	37997	38020	49339	49339					0.0843022202047905
QLLEVLNQL	9	Unmodified	_QLLEVLNQL_					0	0	0			REV__ENST00000588736.1_1_17:74041371-74044231:-|nuORF	REV__ENST00000588736.1_1_17:74041371-74044231:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	535.3184204101562	2	535.316232	1068.61791	-0.55325	-0.00029617	1.4081	0.00075376	0.85481	0.00045759	535.3168720531264	61.705	0.66537	61.705	61.416	62.081	0					45	15	4	0	0	0	0.1804	1	5443	5443		79.713	7.8351	1	4476700	+		45885	21315	37998	38021	49340	49340					0.08634585165850694
QLLEWMEPD	9	Unmodified	_QLLEWMEPD_					0	0	0			REV__ENST00000557740.5_1_12:57623561-57625306:+|nuORF	REV__ENST00000557740.5_1_12:57623561-57625306:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.8565673828125	2	580.768257	1159.52196	1.5849	0.00092044	-2.4028	-0.0013955	-0.81798	-0.00047506	580.766914447971	102.95	0.37752	102.95	102.76	103.14	0					18	8	3	0	0	0	0.027462	1	11501	11501		24.203	0	1	876070	+		45886	22269	37999	38022	49341	49341					-0.05141930736544964
QLLFTVQPL	9	Unmodified	_QLLFTVQPL_					0	0	0			REV__ENST00000499847.6_1_4:106367518-106395207:-|nuORF	REV__ENST00000499847.6_1_4:106367518-106395207:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.7625122070312	2	529.815867	1057.61718	-0.22902	-0.00012134	-2.8533	-0.0015117	-3.0823	-0.001633	529.8144230152906	62.023	0.51025	62.023	61.743	62.253	0					26	11	3	0	0	0	0.027462	1	5478	5478		44.117	1.7207	1	1058500	+		45887	26810	38000	38023	49342	49342					0.09067790516814966
QLLGLGEGEP	10	Unmodified	_QLLGLGEGEP_					0	0	0			REV__ENSG00000277535|ENST00000620151|CT47C1	REV__ENSG00000277535|ENST00000620151|CT47C1	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.21063232421875	2	506.769114	1011.52368	1.8865	0.00095604	0.49988	0.00025332	2.3864	0.0012094	506.7692971943556	93.764	0.70972	93.764	93.426	94.136	0					28	16	3	0	0	0	0.02658	1	10178	10178		30.318	0	1	1465900	+		45888	23635	38001	38024	49343	49343					0.01837446343722604
QLLGLIQRV	9	Unmodified	_QLLGLIQRV_					0	0	0		ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	ENSG00000133574|ENST00000255945|GIMAP4	MULTI-MSMS	OvCa99_classI_Rep5	1	520.3349609375	2	520.334759	1038.65496	1.052	0.00054741	-0.0933	-4.8547E-05	0.95873	0.00049886	520.334413748936	111.15	1.7644	111.15	110.67	112.43	0					66	38	3	0	0	0	0.40667	1	12623	12623		51.335	1.8939	1	1142100			45889	4224	38002	38025	49344	49344					0.13718301502285613
QLLGQFPA	8	Unmodified	_QLLGQFPA_					0	0	0			REV__ENSG00000160959|ENST00000292524|LRRC14	REV__ENSG00000160959|ENST00000292524|LRRC14	MULTI-SECPEP	OvCa9_classI_Rep4_	4	438.2336730957031	2	437.245078	872.475603	-1.1102	-0.00048541	-3.1757	-0.0013886	-4.2859	-0.001874	437.2436394097086	48.947	1.2447	45.84	45.192	46.437	-3.1077					35	23	2	0	0	0	0.028476	1	2740	2740		33.516	17.042	1	48192	+		45890	20683	38003	38026	49345	49345					0.034264172143252836
QLLGREELK	9	Unmodified	_QLLGREELK_					0	0	0			REV__tr|A0A553SPU5|A0A553SPU5_NIACIHTH-typetranscriptionalregulatorHprOS=NialliacirculansOX=1397GN=CEQ21_09550PE=4SV=1	REV__tr|A0A553SPU5|A0A553SPU5_NIACIHTH-typetranscriptionalregulatorHprOS=NialliacirculansOX=1397GN=CEQ21_09550PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.7969970703125	2	543.319306	1084.62406	-2.4047	-0.0013065	0.69087	0.00037536	-1.7139	-0.00093117	543.3199896250613	108.43	1.3622	106.7	106.32	107.68	-1.7256					57	26	3	0	0	0	0.027462	1	9984	9984		27.882	0	1	158500	+		45891	30571	38004	38027	49346	49346					0.08513103397353916
QLLGSAHEV	9	Unmodified	_QLLGSAHEV_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;SPTAN1|p.Q1734Rfs*19|1|0.63|ENSG00000197694|chr9:128615697-128615725|CCAAGTAAAGGACAAGAGGGACACCATCA/-|frameshift_variant;SPTAN1|p.M1752Ifs*16|1|0.07|ENSG00000197694|chr9:128615752-128615753|-/TTCCTGAGTTCTTATG|frameshift_variant	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	OvCa99_classI_Rep5	1	477.25762939453125	2	477.256174	952.497795	-1.0624	-0.00050706	0.62991	0.00030063	-0.43254	-0.00020643	477.256372089545	63.902	0.75542	63.902	63.376	64.132	0					45	18	4	0	0	0	0.12365	1	5771	5771		90.777	13.93	1	5283900			45892	8736	38005	38028	49347	49347					0.019645968920826817
QLLHQKQVFSK	11	Unmodified	_QLLHQKQVFSK_					0	0	0			REV__ENSG00000170260|ENST00000335870|ZNF212	REV__ENSG00000170260|ENST00000335870|ZNF212	MULTI-SECPEP	OvCa99_classI_Rep5	1	452.2625427246094	3	452.597983	1354.77212	0.88509	0.00040059	-0.70299	-0.00031817	0.1821	8.2418E-05	452.59756511254756	67.178	0.63036	67.178	66.898	67.528	0					26	15	2	0	0	0	0.026204	1	6250	6250		11.932	3.5251	1	1533900	+		45893	21524	38006	38029	49348	49348					0.10892414651220861
QLLIGLVLE	9	Unmodified	_QLLIGLVLE_					0	0	0			REV__ENST00000467942.2_1_3:111831271-111835490:+|nuORF	REV__ENST00000467942.2_1_3:111831271-111835490:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	499.751708984375	2	499.318243	996.621933	-0.11985	-5.9843E-05	0.8618	0.00043031	0.74195	0.00037047	499.3185537268263	97.048	1.2792	96.089	95.629	96.908	-0.95856					68	25	3	0	0	0	0.027455	1	8743	8743		42.396	0	1	113990	+		45894	18191	38007	38030	49349	49349					0.1234867465956313
QLLIRKEMS	9	Oxidation (M)	_QLLIRKEM(Oxidation (M))S_		QLLIRKEM(1)S		QLLIRKEM(140)S	0	0	1			REV__ENSG00000147697|ENST00000276708|GSDMC	REV__ENSG00000147697|ENST00000276708|GSDMC	MULTI-MSMS	OvCa99_classI_Rep5	1	567.3133544921875	2	567.320991	1132.62743	2.1895	0.0012422	-3.0945	-0.0017556	-0.90496	-0.0005134	567.3192506256812	80.682	0.71875	80.682	80.443	81.162	0					39	16	4	0	0	0	0.026923	1	8294	8294		138.83	18.205	1	2856700	+		45895	20081	38008	38031	49350	49350		468			0.06642030179705216
QLLKKFIKI	9	Unmodified	_QLLKKFIKI_					0	0	0		nc|ENSG00000091428|Q8WZA2-5|RAPGEF4;nc|ENSG00000091428|Q8WZA2-4|RAPGEF4;nc|ENSG00000091428|Q8WZA2-3|RAPGEF4;ENSG00000091428|ENST00000397081|RAPGEF4;ENST00000545893.5_1_17:38345052-38350037:+|nuORF;nc|ENSG00000108352|Q9UHV5-2|RAPGEFL1;nc|ENSG00000108352|Q9UHV5-3|RAPGEFL1;nc|ENSG00000091428|Q8WZA2-2|RAPGEF4;ENSG00000108352|ENST00000620260|RAPGEFL1;nc|ENSG00000108352|Q9UHV5|RAPGEFL1	nc|ENSG00000091428|Q8WZA2-5|RAPGEF4;ENSG00000108352|ENST00000620260|RAPGEFL1	nc|ENSG00000091428|Q8WZA2-5|RAPGEF4	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.3253784179688	2	565.886627	1129.7587	1.462	0.0008273	-0.14551	-8.234E-05	1.3164	0.00074496	565.8864256451917	123.23	1.1972	123.23	122.81	124.01	0					39	25	2	0	0	0	0.027462	1	14261	14261		38.806	0	1	94428			45896	1869;2648	38009	38032	49351	49351					0.19901208609917376
QLLKNLEIK	9	Unmodified	_QLLKNLEIK_					0	0	0			REV__ENSG00000070019|ENST00000261170|GUCY2C	REV__ENSG00000070019|ENST00000261170|GUCY2C	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.284423828125	2	549.847699	1097.68084	-0.89861	-0.0004941	-2.2243	-0.001223	-3.1229	-0.0017171	549.8463889904489	48.533	0.62175	45.425	45.244	45.866	-3.1077					13	11	2	0	0	0	0.027462	1	2728	2728		27.882	4.8398	1	24733	+		45897	16873	38010	38033	49352	49352					0.1359115095388006
QLLKNLEIK	9	Unmodified	_QLLKNLEIK_					0	0	0			REV__ENSG00000070019|ENST00000261170|GUCY2C	REV__ENSG00000070019|ENST00000261170|GUCY2C	MULTI-MATCH	OvCa9_classI_Rep2	2		2	549.847699	1097.68084	-0.28313	-0.00015568	-2.8555	-0.0015701	-3.1386	-0.0017258	549.8460536731519	48.03	0.74416	45.321	44.935	45.679	-2.7097	-0.052211	-0.00018373	NaN	20.947	17	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13045	+		45898	16873	38010	38033							0.1359115095388006
QLLKQVKP	8	Unmodified	_QLLKQVKP_					0	0	0			REV__ENSG00000173110|ENST00000309758|HSPA6	REV__ENSG00000173110|ENST00000309758|HSPA6	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.2423400878906	2	477.310752	952.606951	0.91968	0.00043897	-0.88369	-0.0004218	0.035989	1.7178E-05	477.3102634423265	67.076	0.43921	67.076	66.898	67.337	0					18	10	2	0	0	0	0.028476	1	6242	6242		53.351	0	1	961370	+		45899	21748	38011	38034	49353	49353					0.12875227582230764
QLLKRHVQRTE	11	Unmodified	_QLLKRHVQRTE_					0	0	0		nc|ENSG00000114982|Q9P2N6-8|KANSL3;nc|ENSG00000114982|Q9P2N6-6|KANSL3;ENST00000447759.5_3_2:97261350-97293793:-|nuORF;nc|ENSG00000114982|Q9P2N6-2|KANSL3;nc|ENSG00000114982|Q9P2N6-5|KANSL3;nc|ENSG00000114982|Q9P2N6-4|KANSL3;ENSG00000114982|ENST00000431828|KANSL3;nc|ENSG00000114982|Q9P2N6|KANSL3;ENST00000487070.5_1_2:97267510-97285240:-|nuORF;ENST00000597150.5_1_2:97261350-97297069:-|nuORF	nc|ENSG00000114982|Q9P2N6-8|KANSL3	nc|ENSG00000114982|Q9P2N6-8|KANSL3	MULTI-SECPEP	OvCa9_classI_Rep2	2	470.29583740234375	3	469.944153	1406.81063	-0.42857	-0.0002014	2.3664	0.0011121	1.9379	0.00091069	470.2794606031879	32.301	0.7431	29.591	29.184	29.927	-2.7097					18	14	2	0	0	0	0.026068	1	1077	1077		34.087	4.5358	1	15202			45900	3053	38012	38035	49354	49354					0.12349720285760668
QLLLAKGAR	9	Unmodified	_QLLLAKGAR_					0	0	0		ENSG00000134996|ENST00000346234|OSTF1	ENSG00000134996|ENST00000346234|OSTF1	ENSG00000134996|ENST00000346234|OSTF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.25921630859375	2	485.313826	968.613099	-0.34486	-0.00016736	-0.18121	-8.7946E-05	-0.52607	-0.00025531	485.31361494092204	29.76	0.34887	29.76	29.586	29.935	0					11	6	2	0	0	0	0.027462	1	1082	1082		37.159	4.3467	1	75590			45901	4349	38013	38036	49355	49355					0.12753745813756723
QLLLALLLVIN	11	Unmodified	_QLLLALLLVIN_					0	0	0		ENSG00000188782|ENST00000456354|CATSPER4;nc|ENSG00000188782|Q7RTX7-2|CATSPER4;CATSPER4|p.G237Wfs*33|1|0.06|ENSG00000188782|chr1:26198314-26198315|-/C|frameshift_variant	ENSG00000188782|ENST00000456354|CATSPER4	ENSG00000188782|ENST00000456354|CATSPER4	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.9104614257812	2	611.910299	1221.80605	1.0157	0.0006215	-1.1419	-0.00069877	-0.12628	-7.727E-05	611.9095092592094	110.82	1.1572	109.22	108.86	110.02	-1.6011					50	21	3	0	0	0	0.69808	1	10211	10211		30.318	5.7985	1	88040			45902	8501	38014	38037	49356	49356					0.20401443090281646
QLLLALLLVIN	11	Unmodified	_QLLLALLLVIN_					0	0	0		ENSG00000188782|ENST00000456354|CATSPER4;nc|ENSG00000188782|Q7RTX7-2|CATSPER4;CATSPER4|p.G237Wfs*33|1|0.06|ENSG00000188782|chr1:26198314-26198315|-/C|frameshift_variant	ENSG00000188782|ENST00000456354|CATSPER4	ENSG00000188782|ENST00000456354|CATSPER4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	611.910299	1221.80605	1.7932	0.0010973	-2.0461	-0.0012521	-0.25291	-0.00015476	611.9089347266353	110.36	1.187	109.22	108.87	110.06	-1.1444	-0.0014686	-0.00067781	NaN	30.318	50	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85437			45903	8501	38014	38037							0.20401443090281646
QLLLLDSNL	9	Unmodified	_QLLLLDSNL_					0	0	0			REV__ENSG00000183309|ENST00000526926|ZNF623	REV__ENSG00000183309|ENST00000526926|ZNF623	MULTI-MSMS	OvCa99_classI_Rep5	1	514.8043212890625	2	514.802957	1027.59136	1.6278	0.000838	0.30721	0.00015815	1.935	0.00099615	514.8030468517798	93.075	0.62399	93.075	92.762	93.386	0					49	14	5	0	0	0	0.35444	1	10109	10109		56.721	1.9447	1	7894800	+		45904	22354	38015	38038	49357	49357					0.0786689627452688
QLLLLKQLS	9	Unmodified	_QLLLLKQLS_					0	0	0		ENST00000317012.4_1_3:111313738-111313888:-|nuORF	ENST00000317012.4_1_3:111313738-111313888:-|nuORF	ENST00000317012.4_1_3:111313738-111313888:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.2984619140625	2	528.344792	1054.67503	2.764	0.0014603	-0.31074	-0.00016418	2.4532	0.0012962	528.3444162965725	89.56	1.3067	89.56	89.235	90.541	0					75	31	4	0	0	0	0.027456	1	9553	9553		23.042	2.0956	1	4236600			45905	10349	38016	38039	49358	49358					0.14988052442231492
QLLLLWALL	9	Unmodified	_QLLLLWALL_					0	0	0			REV__nc|ENSG00000293419|Q7Z5A4|PRSS42P	REV__nc|ENSG00000293419|Q7Z5A4|PRSS42P	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.8128662109375	2	541.852253	1081.68995	-2.4554	-0.0013305	-1.722	-0.00093305	-4.1774	-0.0022635	541.8513025902525	126.76	0.69431	125.34	125.12	125.81	-1.4149					24	13	2	0	0	0	0.027462	1	12110	12110		19.36	3.7182	1	18191	+		45906	29223	38017	38040	49359	49359					0.15237544310230078
QLLLRCFSL	9	Unmodified	_QLLLRCFSL_					0	0	0			REV__nc|ENSG00000196091|Q00872-7|MYBPC1	REV__nc|ENSG00000196091|Q00872-7|MYBPC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.8009033203125	2	546.815344	1091.61614	2.2691	0.0012408	-1.9132	-0.0010462	0.35595	0.00019464	546.8139734882133	94.91	0.55589	94.91	94.648	95.204	0					21	12	2	0	0	0	0.027462	1	10354	10354		24.519	0	1	187560	+		45907	29072	38018	38041	49360	49360					0.07399252876257378
QLLLRIQRVP	10	Unmodified	_QLLLRIQRVP_					0	0	0		ENSG00000159495|ENST00000452443|TGM7	ENSG00000159495|ENST00000452443|TGM7	ENSG00000159495|ENST00000452443|TGM7	MULTI-MSMS	OvCa99_classI_Rep5	1	412.6023864746094	3	412.603068	1234.78738	0.20283	8.3686E-05	-2.1088	-0.00087012	-1.906	-0.00078643	412.602047524918	28.61	0.44862	28.61	28.39	28.838	0					18	8	3	0	0	0	0.818	1	949	949		16.717	0	1	103010			45908	6016	38019	38042	49361	49361					0.1793732623905271
QLLLYDRPL	9	Unmodified	_QLLLYDRPL_					0	0	0		ENSG00000259956|ENST00000563281|RBM15B	ENSG00000259956|ENST00000563281|RBM15B	ENSG00000259956|ENST00000563281|RBM15B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.315185546875	2	565.832049	1129.64954	1.2813	0.00072499	4.2272	0.0023919	5.5085	0.0031169	565.8341220081219	59.898	0.19517	56.468	56.309	56.504	-3.43					5	3	2	0	0	0	0.027462	1	4021	4021		51.335	18.523	1	15700			45909	9488	38020	38043	49362	49362					0.089905779198034
QLLMPVEPE	9	Unmodified	_QLLMPVEPE_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.8185424804688	2	528.275718	1054.53688	-0.66994	-0.00035391	-2.0127	-0.0010633	-2.6826	-0.0014172	528.2744870631618	115.34	0.49344	114.29	114.05	114.54	-1.0505					13	9	2	0	0	0	0.027441	1	8591	8591		37.159	0	1	11588			45910	1754	38021	38044	49363	49363					0.011795611314482812
QLLNHQILK	9	Unmodified	_QLLNHQILK_					0	0	0		ENST00000269503.8_1_18:70211390-70211519:-|nuORF	ENST00000269503.8_1_18:70211390-70211519:-|nuORF	ENST00000269503.8_1_18:70211390-70211519:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	554.3235473632812	2	553.837665	1105.66078	-0.37583	-0.00020815	-0.074747	-4.1398E-05	-0.45058	-0.00024955	553.8376403374441	50.171	0.79391	47.377	47.083	47.877	-2.794					21	15	2	0	0	0	0.027448	1	3244	3244		63.306	13.282	1	22433			45911	9986	38022	38045	49364	49364					0.11217400013924816
QLLNQVLNR	9	Unmodified	_QLLNQVLNR_					0	0	0		ENSG00000164068|ENST00000327697|RNF123;nc|ENSG00000164068|Q5XPI4-2|RNF123;ENST00000487805.6_1_3:49750857-49758735:+|nuORF	ENSG00000164068|ENST00000327697|RNF123	ENSG00000164068|ENST00000327697|RNF123	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.8649291992188	2	549.324922	1096.63529	-0.61504	-0.00033786	0.69203	0.00038015	0.07699	4.2293E-05	549.3254603307104	55.443	0.44973	55.443	55.273	55.723	0					19	10	3	0	0	0	0.027462	1	4534	4534		44.117	6.9577	1	872090			45912	6400	38023	38046	49365	49365					0.0908392549151813
QLLNSGVP	8	Unmodified	_QLLNSGVP_					0	0	0		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2;ENST00000583822.5_1_17:59949574-59962361:-|nuORF	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.2110290527344	2	414.23471	826.454868	0.34918	0.00014464	4.0013	0.0016575	4.3505	0.0018021	414.2360708575516	48.195	1.1796	48.195	47.984	49.164	0					40	26	3	0	0	0	0.028476	1	3629	3629		51.335	8.861	1	524730			45913	2658	38024	38047	49366	49366					0.034698268346687655
QLLNVNFPV	9	Unmodified	_QLLNVNFPV_					0	0	0		tr|A0A7D7A4G8|A0A7D7A4G8_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01670PE=4SV=1	tr|A0A7D7A4G8|A0A7D7A4G8_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01670PE=4SV=1	tr|A0A7D7A4G8|A0A7D7A4G8_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01670PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.3087158203125	2	522.297842	1042.58113	0.79177	0.00041354	-1.6228	-0.00084758	-0.83103	-0.00043405	522.2974111858867	129.38	0.74046	127.92	127.45	128.19	-1.4565					26	14	3	0	0	0	0.027462	1	12331	12331		11.511	0	1	11640			45914	36144	38025	38048	49367	49367					0.061543333399413314
QLLPFLSH	8	Unmodified	_QLLPFLSH_					0	0	0		nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8;DNAH8|p.D2535Vfs*3|1|0.07|ENSG00000124721|chr6:38883994-38883994|A/-|frameshift_variant;DNAH8|p.L2994Pfs*25|1|0.09|ENSG00000124721|chr6:38909633-38909634|-/CCCAGGCTCAAGCCATCCTCTCA|frameshift_variant;DNAH8|p.H3947Qfs*36|1|0.13|ENSG00000124721|chr6:38971631-38971638|ATGCTCGA/-|frameshift_variant	nc|ENSG00000124721|Q96JB1-2|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.24652099609375	2	477.774003	953.533452	-0.58749	-0.00028069	-3.4315	-0.0016395	-4.0189	-0.0019201	477.77225161153797	64.338	0.54016	64.338	64.091	64.631	0					23	12	3	0	0	0	0.028476	1	5813	5813		45.952	3.4775	1	536830			45915	3675	38026	38049	49368	49368					0.054826791397545094
QLLPFLSH	8	Unmodified	_QLLPFLSH_					0	0	0		nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8;DNAH8|p.D2535Vfs*3|1|0.07|ENSG00000124721|chr6:38883994-38883994|A/-|frameshift_variant;DNAH8|p.L2994Pfs*25|1|0.09|ENSG00000124721|chr6:38909633-38909634|-/CCCAGGCTCAAGCCATCCTCTCA|frameshift_variant;DNAH8|p.H3947Qfs*36|1|0.13|ENSG00000124721|chr6:38971631-38971638|ATGCTCGA/-|frameshift_variant	nc|ENSG00000124721|Q96JB1-2|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-MATCH	OvCa9_classI_Rep2	2		2	477.774003	953.533452	-0.63023	-0.00030111	-2.3856	-0.0011398	-3.0159	-0.0014409	477.772699593654	67.258	0.29731	64.597	64.495	64.793	-2.661	0.12952	0.00071033	NaN	45.952	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10677			45916	3675	38026	38049							0.054826791397545094
QLLPQHQVP	9	Unmodified	_QLLPQHQVP_					0	0	0		ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	ENSG00000130522|ENST00000252818|JUND	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2752685546875	2	530.300916	1058.58728	-0.32551	-0.00017262	4.0777	0.0021624	3.7522	0.0019898	530.802892865732	41.237	0.49298	41.237	40.969	41.462	0					16	10	2	0	0	0	0.027462	1	2550	2550		30.504	3.8107	1	53019			45917	3991	38027	38050	49369	49369					0.06032851571490028
QLLPSIPFRLP	11	Unmodified	_QLLPSIPFRLP_					0	0	0			REV__ENST00000278071.6_1_10:106072491-106072860:-|nuORF	REV__ENST00000278071.6_1_10:106072491-106072860:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	640.8903198242188	2	640.889898	1279.76524	-0.17045	-0.00010924	0.2933	0.00018797	0.12285	7.8731E-05	640.8899760073222	130.96	1.1409	130.73	130.4	131.54	-0.22697					67	22	4	0	0	0	0.67529	1	12909	12909		37.812	3.639	1	368320	+		45918	24105	38028	38051	49370	49370					0.13655101770655165
QLLRELIERKT	11	Unmodified	_QLLRELIERKT_					0	0	0		ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	MULTI-MSMS	OvCa9_classI_Rep3	3	466.95159912109375	3	466.952426	1397.83545	1.5916	0.00074322	-2.0144	-0.00094062	-0.42273	-0.00019739	466.9514863874782	62.714	2.1935	59.681	59.362	61.555	-3.0339					129	43	5	0	0	0	0.72488	1	2421	2421		17.167	0	1	504980			45919	9574	38029	38052	49371	49371					0.15244355368463403
QLLRHGAL	8	Unmodified	_QLLRHGAL_					0	0	0		nc|ENSG00000138756|Q9NSY1-3|BMP2K	nc|ENSG00000138756|Q9NSY1-3|BMP2K	nc|ENSG00000138756|Q9NSY1-3|BMP2K	MULTI-MSMS	OvCa99_classI_Rep5	1	454.2784729003906	2	454.277244	906.539935	0.095839	4.3537E-05	-0.006364	-2.891E-06	0.089475	4.0646E-05	454.2771229874772	68.67	0.867	68.67	68.44	69.307	0					43	20	3	0	0	0	0.14363	1	6493	6493		134.12	14.562	1	1796300			45920	15047	38030	38053	49372	49372					0.08292617091126431
QLLRHGALL	9	Unmodified	_QLLRHGALL_					0	0	0		nc|ENSG00000138756|Q9NSY1-3|BMP2K	nc|ENSG00000138756|Q9NSY1-3|BMP2K	nc|ENSG00000138756|Q9NSY1-3|BMP2K	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.75958251953125	2	510.819276	1019.624	-0.2701	-0.00013797	0.54363	0.0002777	0.27353	0.00013972	510.8193973370389	73.206	0.56572	73.206	72.994	73.56	0					30	13	3	0	0	0	0.027462	1	7175	7175		30.504	3.7075	1	1502700			45921	15047	38031	38054	49373	49373					0.11497148188038864
QLLRHIRES	9	Unmodified	_QLLRHIRES_					0	0	0		ENST00000510175.5_1_4:155055-155787:+|nuORF	ENST00000510175.5_1_4:155055-155787:+|nuORF	ENST00000510175.5_1_4:155055-155787:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.2999877929688	2	576.335821	1150.65709	0.7538	0.00043444	3.8444	0.0022156	4.5982	0.0026501	576.3379477616179	154.29	0.90419	154.29	154.03	154.93	0					39	17	4	0	0	0	0.027462	1	18088	18088		25.574	5.5773	1	237190			45922	12969	38032	38055	49374	49374					0.08778730240078403
QLLRTPCPL	9	Unmodified	_QLLRTPCPL_					0	0	0			REV__ENST00000370526.3_1_X:140270028-140270391:-|nuORF	REV__ENST00000370526.3_1_X:140270028-140270391:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.797607421875	2	520.799694	1039.58484	0.59197	0.0003083	-4.3707	-0.0022762	-3.7787	-0.0019679	520.797385276476	36.315	1.995	33.466	33.139	35.134	-2.849					141	39	6	0	0	0	0.50149	1	1298	1298		42.396	3.1433	1	2408500	+		45923	24962	38033	38056	49375	49375					0.06662679842156649
QLLSLLPV	8	Unmodified	_QLLSLLPV_					0	0	0		ENST00000492001.1_1_7:44796309-44796525:+|nuORF	ENST00000492001.1_1_7:44796309-44796525:+|nuORF	ENST00000492001.1_1_7:44796309-44796525:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	441.787109375	2	441.786579	881.558604	1.974	0.00087209	1.2013	0.00053073	3.1753	0.0014028	441.7869815621319	65.076	1.9762	62.352	61.811	63.787	-2.7245					98	38	4	0	0	0	0.74595	1	5011	5011		14.664	0	1	329800			45924	12719	38034	38057	49376	49376					0.11308733942337312
QLLSPEMINLL	11	Unmodified	_QLLSPEMINLL_					0	0	0			REV__nc|ENSG00000077254|Q8TEY7-3|USP33	REV__nc|ENSG00000077254|Q8TEY7-3|USP33	MULTI-MSMS	OvCa99_classI_Rep5	1	424.2410888671875	3	424.240696	1269.70026	-0.16037	-6.8034E-05	1.245	0.00052819	1.0847	0.00046015	424.2411409487933	24.128	0.54905	24.128	23.937	24.486	0					27	10	4	0	0	0	0.72459	1	407	407		13.508	0	1	241690	+		45925	17008	38035	38058	49377	49377					0.0761973918251897
QLLSPSEKKL	10	Unmodified	_QLLSPSEKKL_					0	0	0			REV__ENST00000479209.1_1_3:150264561-150264654:-|nuORF	REV__ENST00000479209.1_1_3:150264561-150264654:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	571.8379516601562	2	571.842613	1141.67067	0.069187	3.9564E-05	2.9413	0.001682	3.0105	0.0017215	571.8440771175536	122.38	1.1992	121.01	120.65	121.85	-1.3666					56	23	4	0	0	0	0.48398	1	11552	11552		56.434	3.4971	1	104550	+		45926	26431	38036	38059	49378	49378					0.10550543228669085
QLLSPSEKKL	10	Unmodified	_QLLSPSEKKL_					0	0	0			REV__ENST00000479209.1_1_3:150264561-150264654:-|nuORF	REV__ENST00000479209.1_1_3:150264561-150264654:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	571.842613	1141.67067	-1.5713	-0.00089851	4.451	0.0025452	2.8797	0.0016467	571.8449641069082	121.28	1.187	121.08	120.75	121.94	-0.19718	0.022603	0.0014134	NaN	56.434	49	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91385	+		45927	26431	38036	38059							0.10550543228669085
QLLSTGLGAL	10	Unmodified	_QLLSTGLGAL_					0	0	0			REV__ADCY8|p.L416Ffs*74|1|0.12|ENSG00000155897|chr8:130943458-130943458|G/-|frameshift_variant	REV__ADCY8|p.L416Ffs*74|1|0.12|ENSG00000155897|chr8:130943458-130943458|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.7891845703125	2	486.78985	971.565146	1.2441	0.00060563	-1.6395	-0.00079807	-0.39533	-0.00019244	486.78901485022004	129.19	1.2356	127.74	127.4	128.63	-1.4565					41	24	2	0	0	0	0.5675	1	12373	12373		45.972	1.5951	1	75838	+		45928	15571	38037	38060	49379	49379					0.07822627103041668
QLLTSILGL	9	Unmodified	_QLLTSILGL_					0	0	0		tr|A0A7D6ZHE0|A0A7D6ZHE0_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22620PE=4SV=1	tr|A0A7D6ZHE0|A0A7D6ZHE0_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22620PE=4SV=1	tr|A0A7D6ZHE0|A0A7D6ZHE0_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22620PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.213623046875	2	479.302593	956.590633	0.32494	0.00015575	-0.80392	-0.00038532	-0.47898	-0.00022958	479.3023425167164	112.53	0.45766	111.02	110.74	111.2	-1.5111					11	8	2	0	0	0	0.027462	1	10388	10388		53.351	0	1	6559.2			45929	35573	38038	38061	49380	49380					0.11060101625469088
QLLVCVHA	8	Unmodified	_QLLVCVHA_					0	0	0			REV__ENSG00000102543|ENST00000251108|CDADC1	REV__ENSG00000102543|ENST00000251108|CDADC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	441.20697021484375	2	441.746931	881.479308	1.4095	0.00062264	2.8889	0.0012762	4.2984	0.0018988	441.7481883701471	46.176	0.47743	46.176	45.979	46.456	0					14	10	2	0	0	0	0.028476	1	3220	3220		20.482	7.5226	1	202520	+		45930	17561	38039	38062	49381	49381					0.03382763716535919
QLLVETLGV	9	Unmodified	_QLLVETLGV_					0	0	0		nc|ENSG00000132016|Q0VDD7-2|BRME1;ENSG00000132016|ENST00000586783|BRME1	nc|ENSG00000132016|Q0VDD7-2|BRME1	nc|ENSG00000132016|Q0VDD7-2|BRME1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.2923278808594	2	486.292225	970.569897	-1.018	-0.00049506	-0.024829	-1.2074E-05	-1.0429	-0.00050714	486.29220747093495	99.959	1.4451	98.274	97.373	98.818	-1.685					60	28	4	0	0	0	0.28934	1	6758	6758		64.207	11.271	1	272520			45931	4107	38040	38063	49382	49382					0.08343511245811897
QLLVETLGV	9	Unmodified	_QLLVETLGV_					0	0	0		nc|ENSG00000132016|Q0VDD7-2|BRME1;ENSG00000132016|ENST00000586783|BRME1	nc|ENSG00000132016|Q0VDD7-2|BRME1	nc|ENSG00000132016|Q0VDD7-2|BRME1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	486.292225	970.569897	-0.50386	-0.00024502	0.53334	0.00025936	0.029482	1.4337E-05	486.2923288287903	99.074	0.99612	98.181	97.757	98.753	-0.89305	-0.040368	-0.00012407	NaN	64.207	59	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200980			45932	4107	38040	38063							0.08343511245811897
QLLVNIIHT	9	Unmodified	_QLLVNIIHT_					0	0	0			REV__ENSG00000151150|ENST00000280772|ANK3;REV__ENSG00000145362|ENST00000357077|ANK2	REV__ENSG00000145362|ENST00000357077|ANK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.760009765625	2	525.818941	1049.62333	1.8355	0.00096514	-0.15018	-7.8969E-05	1.6853	0.00088617	525.8187200766992	76.501	1.3021	76.501	76.199	77.501	0					55	31	3	0	0	0	0.027462	1	7717	7717		27.882	1.1893	1	1246500	+		45933	19961;20219	38041	38064	49383	49383					0.10050308748327552
QLLVPLNNK	9	Unmodified	_QLLVPLNNK_					0	0	0			REV__ENSG00000159433|ENST00000290607|STARD9	REV__ENSG00000159433|ENST00000290607|STARD9	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.7991943359375	2	519.818941	1037.62333	-0.5221	-0.0002714	-3.8138	-0.0019825	-4.3359	-0.0022539	519.8174368831245	68.782	0.16653	68.782	68.649	68.815	0					5	3	2	0	0	0	0.027462	1	6508	6508		31.955	8.9124	1	76966	+		45934	20615	38042	38065	49384	49384					0.10602308748298128
QLLYKYPEL	9	Unmodified	_QLLYKYPEL_					0	0	0			REV__ENSG00000152904|ENST00000282841|GGPS1	REV__ENSG00000152904|ENST00000282841|GGPS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.8058471679688	2	583.826432	1165.63831	-0.79336	-0.00046319	3.7328	0.0021793	2.9395	0.0017161	583.8288333899776	35.222	0.28885	35.222	35.004	35.293	0					4	2	2	0	0	0	0.027462	1	1756	1756		35.618	5.3006	1	19463	+		45935	20309	38043	38066	49385	49385					0.06211755825665932
QLMGMINQL	9	Unmodified	_QLMGMINQL_					0	0	0		nc|ENSG00000134532|P35711-4|SOX5;nc|ENSG00000134532|P35711-2|SOX5;nc|ENSG00000134532|P35711-5|SOX5;ENSG00000134532|ENST00000451604|SOX5	nc|ENSG00000134532|P35711-4|SOX5	nc|ENSG00000134532|P35711-4|SOX5	MULTI-MSMS	OvCa9_classI_Rep2	2	524.2711791992188	2	524.269912	1046.52527	-1.2665	-0.00066397	4.1049	0.0021521	2.8384	0.0014881	524.2719353297791	119.84	3.5537	119.67	119.05	122.61	-0.17138					188	71	5	0	0	0	0.21395	1	11560	11560		73.975	2.0973	1	902400			45936	4306	38044	38067	49386	49386					0.0038704083644915954
QLMKWRLQRRY	11	Unmodified	_QLMKWRLQRRY_					0	0	0			REV__nc|ENSG00000173805|P54257-3|HAP1	REV__nc|ENSG00000173805|P54257-3|HAP1	MULTI-MSMS	OvCa9_classI_Rep3	3	526.6351318359375	3	526.633033	1576.87727	0.89518	0.00047143	2.7825	0.0014653	3.6777	0.0019368	526.6344674636681	62.939	1.7933	59.905	59.561	61.354	-3.0339					97	35	4	0	0	0	0.72545	1	2351	2351		9.6461	0.84683	1	164120	+		45937	21801	38045	38068	49387	49387					0.11190632575971904
QLMLGGIIIL	10	Unmodified	_QLMLGGIIIL_					0	0	0			REV__tr|A0A553SLJ7|A0A553SLJ7_NIACINCS2familypermeaseOS=NialliacirculansOX=1397GN=CEQ21_20770PE=3SV=1	REV__tr|A0A553SLJ7|A0A553SLJ7_NIACINCS2familypermeaseOS=NialliacirculansOX=1397GN=CEQ21_20770PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.8137817382812	2	535.835746	1069.65694	-0.31917	-0.00017102	3.3472	0.0017935	3.028	0.0016225	535.8373492070858	96.495	1.3084	94.07	93.811	95.119	-2.4256					45	25	3	0	0	0	0.026822	1	8566	8566		30.504	0	1	91670	+		45938	30231	38046	38069	49388	49388					0.12489594195881182
QLMVRPPPPCL	11	Unmodified	_QLMVRPPPPCL_					0	0	0		ENST00000590452.1_1_19:11339555-11339994:-|nuORF	ENST00000590452.1_1_19:11339555-11339994:-|nuORF	ENST00000590452.1_1_19:11339555-11339994:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	416.8547668457031	3	417.563116	1249.66752	1.2503	0.00052208	-2.2507	-0.0009398	-1.0004	-0.00041773	417.56201513276244	67.736	0.53682	64.246	64.037	64.574	-3.4902					17	10	2	0	0	0	0.025818	1	5003	5003		23.378	9.2919	1	46420			45939	14105	38047	38070	49389	49389					0.052672535786769004
QLNEQLREA	9	Unmodified	_QLNEQLREA_					0	0	0			REV__ENSG00000242689|ENST00000361987|CNTF	REV__ENSG00000242689|ENST00000361987|CNTF	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.2901611328125	2	550.78837	1099.56219	-0.25554	-0.00014075	1.5924	0.0008771	1.3369	0.00073635	550.7891430004247	69.162	0.9011	69.162	68.939	69.84	0					43	21	4	0	0	0	0.027447	1	6552	6552		39.253	0	1	4544600	+		45940	23459	38048	38071	49390	49390					0.01638751978248365
QLNKCERNLE	10	Unmodified	_QLNKCERNLE_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	MULTI-SECPEP	OvCa99_classI_Rep5	1	623.838134765625	2	623.814061	1245.61357	1.6312	0.0010175	2.7636	0.001724	4.3948	0.0027415	623.8159493368572	126.22	0.33131	126.22	126.04	126.37	0					11	6	2	0	0	0	0.026714	1	14608	14608		60.118	32.037	1	71512	+		45941	21314	38049	38072	49391	49391					0.0005875268063846306
QLNLGPLP	8	Unmodified	_QLNLGPLP_					0	0	0		ENST00000525264.5_1_11:64981802-64993164:+|nuORF;nc|ENSG00000197847|A6NK97-2|SLC22A20P	ENST00000525264.5_1_11:64981802-64993164:+|nuORF	ENST00000525264.5_1_11:64981802-64993164:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	427.2493896484375	2	426.252903	850.491253	1.4531	0.0006194	-0.98341	-0.00041918	0.46972	0.00020022	426.2523563902557	90.585	1.1681	89.283	88.879	90.047	-1.302					42	22	2	0	0	0	0.028476	1	7963	7963		38.806	3.6054	1	194630			45942	13185	38050	38073	49392	49392					0.06002703731383008
QLNLGPLP	8	Unmodified	_QLNLGPLP_					0	0	0		ENST00000525264.5_1_11:64981802-64993164:+|nuORF;nc|ENSG00000197847|A6NK97-2|SLC22A20P	ENST00000525264.5_1_11:64981802-64993164:+|nuORF	ENST00000525264.5_1_11:64981802-64993164:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	426.252903	850.491253	-0.31562	-0.00013453	0.59941	0.0002555	0.2838	0.00012097	426.2530442047771	91.729	1.1639	89.187	88.912	90.076	-2.5425	-0.014259	0.00081321	NaN	30.504	40	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265990			45943	13185	38050	38073							0.06002703731383008
QLNPFHLK	8	Unmodified	_QLNPFHLK_					0	0	0		ENSG00000145723|ENST00000399004|GIN1	ENSG00000145723|ENST00000399004|GIN1	ENSG00000145723|ENST00000399004|GIN1	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.8012390136719	2	498.784902	995.55525	-1.432	-0.00071425	0.79138	0.00039473	-0.6406	-0.00031952	498.7852727784945	51.637	0.3455	48.824	48.651	48.996	-2.8129					10	6	2	0	0	0	0.028476	1	3393	3393		60.294	7.9948	1	14690			45944	5240	38051	38074	49393	49393					0.05729483888319464
QLNPIGSLQEL	11	Unmodified	_QLNPIGSLQEL_					0	0	0		nc|ENSG00000180228|O75569-3|PRKRA;nc|ENSG00000180228|O75569-2|PRKRA;ENSG00000180228|ENST00000325748|PRKRA	nc|ENSG00000180228|O75569-3|PRKRA	nc|ENSG00000180228|O75569-3|PRKRA	MULTI-MSMS	OvCa99_classI_Rep5	1	606.327392578125	2	606.335153	1210.65575	1.9094	0.0011577	-1.7534	-0.0010632	0.15599	9.4584E-05	606.3339513785413	129.66	1.0319	129.66	129.26	130.29	0					49	21	4	0	0	0	0.52474	1	15026	15026		51.528	9.0533	1	383920			45945	7861	38052	38075	49394	49394					0.0588505136065578
QLNRQPNQ	8	Unmodified	_QLNRQPNQ_					0	0	0			REV__ENSG00000184898|ENST00000331426|RBM43	REV__ENSG00000184898|ENST00000331426|RBM43	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.822998046875	2	499.262322	996.510091	-0.13092	-6.5365E-05	-2.5975	-0.0012969	-2.7285	-0.0013622	499.2610726816583	73.527	0.35858	73.527	73.359	73.717	0					13	8	2	0	0	0	0.028476	1	7198	7198		30.504	3.7075	1	269740	+		45946	22455	38053	38076	49395	49395					0.011696333551299176
QLNRQPNQ	8	Unmodified	_QLNRQPNQ_					0	0	0			REV__ENSG00000184898|ENST00000331426|RBM43	REV__ENSG00000184898|ENST00000331426|RBM43	MULTI-MATCH	OvCa9_classI_Rep3	3		2	499.262322	996.510091	-0.87447	-0.00043659	-5.1183	-0.0025554	-5.9928	-0.002992	499.2595370132585	75.742	0.50813	73.354	73.095	73.603	-2.3879	-0.20664	-0.00055718	NaN	30.504	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15047	+		45947	22455	38053	38076							0.011696333551299176
QLNRQPNQ	8	Unmodified	_QLNRQPNQ_					0	0	0			REV__ENSG00000184898|ENST00000331426|RBM43	REV__ENSG00000184898|ENST00000331426|RBM43	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	499.262322	996.510091	-0.58388	-0.00029151	-7.8093	-0.0038989	-8.3931	-0.0041904	499.25872041266643	76.74	0.37551	73.801	73.55	73.926	-2.9389	0.24044	-0.0032442	NaN	30.504	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34413	+		45948	22455	38053	38076							0.011696333551299176
QLNSGLVV	8	Unmodified	_QLNSGLVV_					0	0	0		tr|A0A7D6VVK1|A0A7D6VVK1_9CLOTPeptidoglycan-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11485PE=3SV=1	tr|A0A7D6VVK1|A0A7D6VVK1_9CLOTPeptidoglycan-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11485PE=3SV=1	tr|A0A7D6VVK1|A0A7D6VVK1_9CLOTPeptidoglycan-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11485PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	414.59027099609375	2	415.242535	828.470518	-0.055121	-2.2889E-05	0.20162	8.3723E-05	0.1465	6.0834E-05	415.2425274547666	57.06	0.69361	54.268	53.981	54.674	-2.7921					22	13	2	0	0	0	0.028476	1	4050	4050		47.916	9.1095	1	31862			45949	35222	38054	38077	49396	49396					0.049421133517171256
QLNSGLVV	8	Unmodified	_QLNSGLVV_					0	0	0		tr|A0A7D6VVK1|A0A7D6VVK1_9CLOTPeptidoglycan-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11485PE=3SV=1	tr|A0A7D6VVK1|A0A7D6VVK1_9CLOTPeptidoglycan-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11485PE=3SV=1	tr|A0A7D6VVK1|A0A7D6VVK1_9CLOTPeptidoglycan-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11485PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	415.242535	828.470518	0.18416	7.6469E-05	-0.11705	-4.8605E-05	0.067103	2.7864E-05	415.24238652603657	57.495	1.2714	54.15	53.577	54.849	-3.3449	-0.058807	-8.0074E-05	NaN	47.916	39	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176790			45950	35222	38054	38077							0.049421133517171256
QLNVKRNNTK	10	Unmodified	_QLNVKRNNTK_					0	0	0			REV__ENST00000345317.6_1_7:26766595-26778422:-|nuORF	REV__ENST00000345317.6_1_7:26766595-26778422:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	405.5531311035156	3	405.570316	1213.68912	1.6918	0.00068615	3.8954	0.0015799	5.5872	0.002266	405.5722564491954	47.698	0.25388	44.59	44.482	44.736	-3.1077					6	4	2	0	0	0	0.026956	1	2595	2595		6.001	0.58812	1	7059.2	+		45951	24691	38055	38078	49397	49397					0.0908209792321486
QLNVRVLQL	9	Unmodified	_QLNVRVLQL_					0	0	0		nc|ENSG00000101004|Q9Y2I6-2|NINL;NINL|p.R1202Efs*7|1|0.18|ENSG00000101004|chr20:25461615-25461615|A/-|frameshift_variant;ENSG00000101004|ENST00000278886|NINL	nc|ENSG00000101004|Q9Y2I6-2|NINL	nc|ENSG00000101004|Q9Y2I6-2|NINL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.3563232421875	2	541.837665	1081.66078	-1.0038	-0.0005439	-0.79373	-0.00043007	-1.7975	-0.00097397	541.8368278150464	46.706	0.92409	43.634	43.398	44.322	-3.0724					41	17	3	0	0	0	0.027462	1	2476	2476		21.96	0	1	146420			45952	2133	38056	38079	49398	49398					0.12321400013956918
QLPAEPKEL	9	Unmodified	_QLPAEPKEL_					0	0	0		nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.2677001953125	2	512.787307	1023.56006	0.76055	0.00039	-0.90516	-0.00046415	-0.14461	-7.4154E-05	512.7871058654854	84.6	0.37452	81.937	81.776	82.15	-2.6629					12	7	2	0	0	0	0.027453	1	7084	7084		54.776	11.912	1	33368			45953	1657	38057	38080	49399	49399					0.04922323240418791
QLPAFLHRIV	10	Unmodified	_QLPAFLHRIV_					0	0	0			REV__DNMT3A|p.K906Q|1|0.04|ENSG00000119772|chr2:25234302-25234302|T/G|missense_variant	REV__DNMT3A|p.K906Q|1|0.04|ENSG00000119772|chr2:25234302-25234302|T/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8590087890625	2	597.361308	1192.70806	-4.9941	-0.0029833	0.34798	0.00020787	-4.6461	-0.0027754	597.361356414137	157.6	0.96988	156.05	155.73	156.7	-1.545					62	25	3	0	0	0	0.78463	1	15555	15555		20.947	2.6225	1	81979	+		45954	16325	38058	38081	49400	49400					0.11941679284927886
QLPARRPL	8	Unmodified	_QLPARRPL_					0	0	0		nc|ENSG00000132879|Q9H4M3-2|FBXO44	nc|ENSG00000132879|Q9H4M3-2|FBXO44	nc|ENSG00000132879|Q9H4M3-2|FBXO44	MULTI-MSMS	OvCa9_classI_Rep2	2	475.79901123046875	2	475.798343	949.582134	-1.1416	-0.00054318	1.0631	0.00050583	-0.078494	-3.7347E-05	475.7987527158406	55.46	1.1933	52.646	52.022	53.215	-2.8139					74	23	4	0	0	0	0.75915	1	3881	3881		20.482	1.1219	1	547610			45955	15019	38059	38082	49401	49401					0.10532592499521343
QLPDRDFHL	9	Unmodified	_QLPDRDFHL_					0	0	0			REV__ENST00000514075.2_1_4:8176279-8176723:+|nuORF	REV__ENST00000514075.2_1_4:8176279-8176723:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	570.8261108398438	2	570.793455	1139.57236	-0.76628	-0.00043739	3.9728	0.0022677	3.2066	0.0018303	570.7955007666387	45.969	0.6805	42.897	42.613	43.294	-3.0724					33	12	3	0	0	0	0.027426	1	2368	2368		66.429	16.893	1	85421	+		45956	20867	38060	38083	49402	49402					0.008153597034606719
QLPDRDFHL	9	Unmodified	_QLPDRDFHL_					0	0	0			REV__ENST00000514075.2_1_4:8176279-8176723:+|nuORF	REV__ENST00000514075.2_1_4:8176279-8176723:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	570.793455	1139.57236	-0.82928	-0.00047335	3.4698	0.0019805	2.6405	0.0015072	570.7951730369429	45.711	0.60325	43.002	42.697	43.3	-2.7097	0.052433	-0.00048741	NaN	66.429	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20379	+		45957	20867	38060	38083							0.008153597034606719
QLPEHKVNL	9	Unmodified	_QLPEHKVNL_					0	0	0			REV__ENSG00000101052|ENST00000373030|IFT52	REV__ENSG00000101052|ENST00000373030|IFT52	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.2623901367188	2	539.306198	1076.59784	-0.2151	-0.000116	0.94376	0.00050898	0.72867	0.00039297	539.305427198062	51.382	0.80122	51.382	50.907	51.708	0					25	18	2	0	0	0	0.027462	1	4004	4004		34.173	0	1	281650	+		45958	17468	38061	38084	49403	49403					0.06260834225895451
QLPFVLGQQP	10	Unmodified	_QLPFVLGQQP_					0	0	0		ENSG00000223611|ENST00000486479|SUPT20HL2	ENSG00000223611|ENST00000486479|SUPT20HL2	ENSG00000223611|ENST00000486479|SUPT20HL2	MULTI-SECPEP	OvCa9_classI_Rep2	2	564.8048706054688	2	563.816399	1125.61824	-0.31887	-0.00017979	0.1124	6.3374E-05	-0.20647	-0.00011641	563.8162646813715	98.915	0.79702	98.022	97.707	98.504	-0.89305					38	15	3	0	0	0	0.027147	1	9055	9055		29.15	1.2673	1	90952			45959	9251	38062	38085	49404	49404					0.060460048857066795
QLPGVHGVKL	10	Unmodified	_QLPGVHGVKL_					0	0	0			REV__TRIM32|p.H460Qfs*40|1|0.09|ENSG00000119401|chr9:116699121-116699122|-/G|frameshift_variant	REV__TRIM32|p.H460Qfs*40|1|0.09|ENSG00000119401|chr9:116699121-116699122|-/G|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2883911132812	2	524.319109	1046.62366	-1.0256	-0.00053776	0.20636	0.0001082	-0.81926	-0.00042956	524.3194344194568	40.037	0.13393	40.037	39.926	40.06	0					4	2	2	0	0	0	0.026582	1	2398	2398		42.396	8.8806	1	17416	+		45960	18440	38063	38086	49405	49405					0.10221728468172842
QLPGVHGVKL	10	Unmodified	_QLPGVHGVKL_					0	0	0			REV__TRIM32|p.H460Qfs*40|1|0.09|ENSG00000119401|chr9:116699121-116699122|-/G|frameshift_variant	REV__TRIM32|p.H460Qfs*40|1|0.09|ENSG00000119401|chr9:116699121-116699122|-/G|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	524.319109	1046.62366	-1.545	-0.00081007	-6.044	-0.003169	-7.589	-0.0039791	524.3160984499351	43.115	0.52482	40.108	39.853	40.378	-3.0074	0.035096	-0.0022275	NaN	42.396	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24761	+		45961	18440	38063	38086							0.10221728468172842
QLPINKPK	8	Unmodified	_QLPINKPK_					0	0	0		tr|A0A553SML1|A0A553SML1_NIACICatalaseOS=NialliacirculansOX=1397GN=CEQ21_22670PE=3SV=1	tr|A0A553SML1|A0A553SML1_NIACICatalaseOS=NialliacirculansOX=1397GN=CEQ21_22670PE=3SV=1	tr|A0A553SML1|A0A553SML1_NIACICatalaseOS=NialliacirculansOX=1397GN=CEQ21_22670PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	469.7646789550781	2	469.295102	936.575651	-0.026504	-1.2438E-05	0.99354	0.00046626	0.96703	0.00045382	469.29519768620713	71.207	0.66621	71.207	70.8	71.466	0					32	16	3	0	0	0	0.028476	1	6841	6841		11.511	0	1	970130			45962	33845	38064	38087	49406	49406					0.10482654548127357
QLPINKPK	8	Unmodified	_QLPINKPK_					0	0	0		tr|A0A553SML1|A0A553SML1_NIACICatalaseOS=NialliacirculansOX=1397GN=CEQ21_22670PE=3SV=1	tr|A0A553SML1|A0A553SML1_NIACICatalaseOS=NialliacirculansOX=1397GN=CEQ21_22670PE=3SV=1	tr|A0A553SML1|A0A553SML1_NIACICatalaseOS=NialliacirculansOX=1397GN=CEQ21_22670PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	469.295102	936.575651	0.18606	8.7318E-05	4.8599	0.0022807	5.0459	0.002368	469.29743041772264	74.656	0.62963	71.426	71.144	71.773	-3.2308	0.10926	0.0028809	NaN	11.511	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54716			45963	33845	38064	38087							0.10482654548127357
QLPKAPMGPG	10	Unmodified	_QLPKAPMGPG_					0	0	0			REV__ENSG00000167548|ENST00000301067|KMT2D	REV__ENSG00000167548|ENST00000301067|KMT2D	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.27398681640625	2	498.27077	994.526987	0.43244	0.00021547	-1.5457	-0.0007702	-1.1133	-0.00055472	498.26989989499106	32.13	0.90043	29.435	28.914	29.814	-2.6954					52	30	2	0	0	0	0.81992	1	742	742		16.473	3.514	1	19898	+		45964	21287	38065	38088	49407	49407					0.029504179167247457
QLPKKPYRP	9	Unmodified	_QLPKKPYRP_					0	0	0			REV__nc|ENSG00000132972|Q9BXT8-2|RNF17	REV__nc|ENSG00000132972|Q9BXT8-2|RNF17	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.384521484375	2	563.840208	1125.66586	0.48807	0.00027519	1.3657	0.00077004	1.8538	0.0010452	563.8409851933056	31.931	0.54586	31.931	31.757	32.303	0					16	10	2	0	0	0	0.027462	1	1374	1374		18.324	0	1	34764	+		45965	28854	38066	38089	49408	49408					0.10805703876553707
QLPKNVIIS	9	Unmodified	_QLPKNVIIS_					0	0	0			REV__ENST00000484400.5_1_10:129046280-129142589:+|nuORF	REV__ENST00000484400.5_1_10:129046280-129142589:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.3238220214844	2	506.313492	1010.61243	-1.0496	-0.00053145	1.3449	0.00068093	0.29524	0.00014949	506.31421135792175	106.28	1.3471	104.26	103.95	105.3	-2.0161					49	25	2	0	0	0	0.027456	1	9717	9717		30.504	0	1	691530	+		45966	26547	38067	38090	49409	49409					0.1075490637402936
QLPLDDALL	9	Unmodified	_QLPLDDALL_					0	0	0		DPCD|p.F159I|1|0.07|ENSG00000166171|chr10:101608905-101608905|T/A|missense_variant;ENSG00000166171|ENST00000370151|DPCD	DPCD|p.F159I|1|0.07|ENSG00000166171|chr10:101608905-101608905|T/A|missense_variant	DPCD|p.F159I|1|0.07|ENSG00000166171|chr10:101608905-101608905|T/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.3268737792969	2	499.281857	996.549162	3.4619	0.0017285	-3.1286	-0.001562	0.33331	0.00016642	499.28049005701047	131.39	0.35999	129.91	129.69	130.05	-1.4779					10	7	2	0	0	0	0.027462	1	12606	12606		17.365	0	1	7593.6			45967	760	38068	38091	49410	49410					0.05074920866127286
QLPLIFLQS	9	Unmodified	_QLPLIFLQS_					0	0	0			REV__ENST00000273258.3_1_3:69154230-69154353:+|nuORF	REV__ENST00000273258.3_1_3:69154230-69154353:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.7578735351562	2	529.815867	1057.61718	0.17655	9.354E-05	-3.9493	-0.0020924	-3.7728	-0.0019989	529.8132910234942	57.78	0.67102	57.78	57.566	58.237	0					23	15	2	0	0	0	0.027462	1	4936	4936		27.882	0	1	567130	+		45968	24083	38069	38092	49411	49411					0.09067790516814966
QLPLILIIC	9	Unmodified	_QLPLILIIC_					0	0	0		tr|A0A7D7A5V4|A0A7D7A5V4_9CLOTEndosporegerminationpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07610PE=3SV=1	tr|A0A7D7A5V4|A0A7D7A5V4_9CLOTEndosporegerminationpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07610PE=3SV=1	tr|A0A7D7A5V4|A0A7D7A5V4_9CLOTEndosporegerminationpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07610PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	513.8240966796875	2	513.325014	1024.63547	1.1851	0.00060836	-0.96302	-0.00049434	0.22213	0.00011402	513.8246530993847	67.449	2.102	64.562	64.137	66.239	-2.8873					146	41	6	0	0	0	0.52083	4	2843	2843;2849;2855;2861		40.573	8.6178	1	2025700			45969	36178	38070	38093	49412;49413;49414;49415	49412					0.12414209167172885
QLPLLPGL	8	Unmodified	_QLPLLPGL_					0	0	0			REV__ENSG00000064726|ENST00000261721|BTBD1	REV__ENSG00000064726|ENST00000261721|BTBD1	MULTI-SECPEP	OvCa9_classI_Rep3	3	425.5628356933594	2	425.773471	849.53239	1.2758	0.00054318	1.6846	0.00071727	2.9604	0.0012605	425.7742454813073	68.871	1.2474	66.056	65.863	67.111	-2.8144					44	24	2	0	0	0	0.028476	1	3146	3146		29.842	0	1	65843	+		45970	16776	38071	38094	49416	49416					0.10160464770854105
QLPLLPGL	8	Unmodified	_QLPLLPGL_					0	0	0			REV__ENSG00000064726|ENST00000261721|BTBD1	REV__ENSG00000064726|ENST00000261721|BTBD1	MULTI-SECPEP	OvCa9_classI_Rep3	3	425.5635070800781	2	425.773471	849.53239	1.0075	0.00042896	2.2753	0.00096877	3.2828	0.0013977	425.77434580800525	70.907	1.747	68.188	67.905	69.652	-2.7196					84	34	4	0	0	0	0.028476	1	3242	3242		29.842	0	1	850600	+		45971	16776	38071	38094	49417	49417					0.10160464770854105
QLPLTKDVS	9	Unmodified	_QLPLTKDVS_					0	0	0		nc|ENSG00000060566|Q68CJ9-5|CREB3L3	nc|ENSG00000060566|Q68CJ9-5|CREB3L3	nc|ENSG00000060566|Q68CJ9-5|CREB3L3	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.3155822753906	2	500.787307	999.560061	1.919	0.000961	0.82527	0.00041329	2.7443	0.0013743	500.78726425396843	117.67	0.32991	117.67	117.51	117.84	0					10	6	2	0	0	0	0.027462	1	13492	13492		39.253	0	1	100540			45972	14881	38072	38095	49418	49418					0.060263232404167866
QLPLTPLTPTP	11	Unmodified	_QLPLTPLTPTP_					0	0	0		nc|ENSG00000124496|Q96PN7-2|TRERF1;nc|ENSG00000124496|Q96PN7-3|TRERF1;nc|ENSG00000124496|Q96PN7-4|TRERF1;nc|ENSG00000124496|Q96PN7-5|TRERF1;nc|ENSG00000124496|Q96PN7|TRERF1;ENSG00000124496|ENST00000695948|TRERF1	nc|ENSG00000124496|Q96PN7-2|TRERF1	nc|ENSG00000124496|Q96PN7-2|TRERF1	MULTI-MSMS	OvCa9_classI_Rep2	2	589.343017578125	2	589.344989	1176.67542	-3.0463	-0.0017953	-0.38122	-0.00022467	-3.4276	-0.00202	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.71789	1	14847	14847		23.523	2.6855	1	272220			45973	3656	38073	38096	49419	49419					0.09415427371413898
QLPNKKNCR	9	Unmodified	_QLPNKKNCR_					0	0	0		nc|ENSG00000119684|Q9UHC1-2|MLH3;ENSG00000119684|ENST00000355774|MLH3;MLH3|p.S680Rfs*5|1|0.07|ENSG00000119684|chr14:75047616-75047617|-/AC|frameshift_variant;MLH3|p.P863Hfs*9|1|0.09|ENSG00000119684|chr14:75047068-75047069|-/ATCTCATGCACAT|frameshift_variant;MLH3|p.D939Efs*7|1|0.09|ENSG00000119684|chr14:75046839-75046840|-/C|frameshift_variant	nc|ENSG00000119684|Q9UHC1-2|MLH3	nc|ENSG00000119684|Q9UHC1-2|MLH3	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.846435546875	2	550.8033	1099.59205	-0.61919	-0.00034105	-2.7912	-0.0015374	-3.4104	-0.0018785	550.8016109030063	29.411	0.24837	29.411	29.288	29.536	0					8	4	2	0	0	0	0.027462	1	1048	1048		23.042	10.083	1	37603			45974	3381	38074	38097	49420	49420					0.04623412442560948
QLPPLRAEN	9	Unmodified	_QLPPLRAEN_					0	0	0			REV__ENSG00000115112|ENST00000263707|TFCP2L1	REV__ENSG00000115112|ENST00000263707|TFCP2L1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.8118286132812	2	519.290548	1036.56654	0.28924	0.0001502	3.8099	0.0019785	4.0992	0.0021287	519.2924194198516	110.96	1.2105	109.36	109.12	110.33	-1.6011					48	22	3	0	0	0	0.027462	1	10192	10192		20.947	0	1	145290	+		45975	18219	38075	38098	49421	49421					0.04972261191801408
QLPPQMYKP	9	Unmodified	_QLPPQMYKP_					0	0	0		ENSG00000139620|ENST00000420613|KANSL2	ENSG00000139620|ENST00000420613|KANSL2	ENSG00000139620|ENST00000420613|KANSL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.2818603515625	2	551.291702	1100.56885	0.64393	0.00035499	-4.2508	-0.0023434	-3.6068	-0.0019884	551.2893085220414	110.84	1.2099	109.24	108.91	110.12	-1.6011					51	22	4	0	0	0	0.027462	1	10275	10275		29.15	18.884	1	75512			45976	4789	38076	38099	49422	49422					0.022589736052623266
QLPSRLTIV	9	Unmodified	_QLPSRLTIV_					0	0	0			REV__nc|ENSG00000129003|Q709C8-4|VPS13C	REV__nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-SECPEP	OvCa9_classI_Rep2	2	514.8098754882812	2	513.818941	1025.62333	0.53135	0.00027302	-0.97496	-0.00050095	-0.44361	-0.00022793	513.8181458970541	113.53	0.69254	113.41	113.17	113.86	-0.11777					30	13	3	0	0	0	0.027462	1	10828	10828		27.882	7.4004	1	33357	+		45977	18881	38077	38100	49423	49423					0.11154308748314179
QLPSTIIIDW	10	Unmodified	_QLPSTIIIDW_					0	0	0			REV__tr|A0A553SJR2|A0A553SJR2_NIACIHistidinephosphatasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_17425PE=4SV=1	REV__tr|A0A553SJR2|A0A553SJR2_NIACIHistidinephosphatasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_17425PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.312255859375	2	593.329339	1184.64412	1.1693	0.00069377	3.4778	0.0020635	4.6471	0.0027572	593.3320571431697	154.89	0.2525	154.89	154.72	154.98	0					7	4	2	0	0	0	0.027174	1	18147	18147		14.865	0	1	15454	+		45978	30033	38078	38101	49424	49424					0.059188543373238645
QLPSVPIQKL	10	Unmodified	_QLPSVPIQKL_					0	0	0		ENST00000437188.1_1_2:73597552-73597930:+|nuORF	ENST00000437188.1_1_2:73597552-73597930:+|nuORF	ENST00000437188.1_1_2:73597552-73597930:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.8457641601562	2	561.847699	1121.68084	-2.5142	-0.0014126	-1.0339	-0.00058092	-3.5482	-0.0019935	561.8469845001015	152.99	1.31	151.56	151.24	152.55	-1.4351					96	32	4	0	0	0	0.65849	1	15185	15185		35.152	10.633	1	225430			45979	11885	38079	38102	49425	49425					0.12487150953870696
QLQEFIYSLT	10	Unmodified	_QLQEFIYSLT_					0	0	0			REV__nc|ENSG00000164627|Q6ZMV9-3|KIF6	REV__nc|ENSG00000164627|Q6ZMV9-3|KIF6	MULTI-SECPEP	OvCa9_classI_Rep2	2	621.85498046875	2	621.324254	1240.63395	-0.24107	-0.00014978	4.1229	0.0025617	3.8819	0.0024119	621.3267398462424	70.977	0.71703	68.406	67.866	68.583	-2.5707					18	13	2	0	0	0	0.02678	1	5640	5640		31.53	0	1	12062	+		45980	21005	38080	38103	49426	49426					0.02326246612074101
QLQEKELVNL	10	Unmodified	_QLQEKELVNL_					0	0	0			REV__nc|ENSG00000175309|Q8IUZ5-3|PHYKPL	REV__nc|ENSG00000175309|Q8IUZ5-3|PHYKPL	MULTI-SECPEP	OvCa99_classI_Rep5	1	607.32275390625	2	607.342978	1212.6714	2.8376	0.0017234	3.3533	0.0020366	6.1909	0.00376	607.3449795065271	96.18	1.0524	96.18	95.785	96.838	0					32	24	2	0	0	0	0.026658	1	10618	10618		16.007	8.9881	1	4332200	+		45981	15578	38081	38104	49427	49427					0.07357337877715509
QLQELKNLKL	10	Unmodified	_QLQELKNLKL_					0	0	0		ENST00000540712.1_1_14:50068361-50081211:+|nuORF;ENSG00000165501|ENST00000298288|LRR1	ENST00000540712.1_1_14:50068361-50081211:+|nuORF	ENST00000540712.1_1_14:50068361-50081211:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.8527526855469	3	409.587084	1225.73942	0.32141	0.00013165	-2.4149	-0.00098913	-2.0935	-0.00085749	409.58604221610193	37.367	0.64686	37.367	37.114	37.761	0					35	13	4	0	0	0	0.026942	1	2046	2046		14.694	0	1	582550			45982	6569	38082	38105	49428	49428					0.13558207528353705
QLQELLKEL	9	Unmodified	_QLQELLKEL_					0	0	0			REV__tr|A0A553SKB3|A0A553SKB3_NIACIPilusassemblyproteinPilOOS=NialliacirculansOX=1397GN=CEQ21_18370PE=4SV=1	REV__tr|A0A553SKB3|A0A553SKB3_NIACIPilusassemblyproteinPilOOS=NialliacirculansOX=1397GN=CEQ21_18370PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	557.3327026367188	2	557.329339	1112.64412	2.8815	0.0016059	-0.78054	-0.00043502	2.1009	0.0011709	557.3289234205088	101.04	0.62833	101.04	100.86	101.48	0					29	14	3	0	0	0	0.14855	1	11234	11234		85.161	2.4103	1	1563300	+		45983	30103	38083	38106	49429	49429					0.0923085433732922
QLQENVIRL	9	Unmodified	_QLQENVIRL_					0	0	0			REV__ENSG00000174799|ENST00000257287|CEP135	REV__ENSG00000174799|ENST00000257287|CEP135	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.3148803710938	2	556.824755	1111.63496	2.9508	0.0016431	-0.43953	-0.00024474	2.5112	0.0013983	556.8242360663993	90.374	0.64309	90.374	89.933	90.577	0					19	15	2	0	0	0	0.027247	1	9642	9642		101.6	16.685	1	330930	+		45984	21853	38084	38107	49430	49430					0.08360505771634053
QLQERMEL	8	Oxidation (M)	_QLQERM(Oxidation (M))EL_		QLQERM(1)EL		QLQERM(69)EL	0	0	1		nc|ENSG00000104936|Q09013-12|DMPK;nc|ENSG00000104936|Q09013-10|DMPK;nc|ENSG00000104936|Q09013-2|DMPK;nc|ENSG00000104936|Q09013-8|DMPK;ENST00000596686.5_1_19:46273741-46282867:-|nuORF;nc|ENSG00000104936|Q09013-7|DMPK;nc|ENSG00000104936|Q09013-11|DMPK;nc|ENSG00000104936|Q09013-15|DMPK;ENSG00000104936|ENST00000291270|DMPK;nc|ENSG00000104936|Q09013-16|DMPK;nc|ENSG00000104936|Q09013-6|DMPK;nc|ENSG00000104936|Q09013-1|DMPK;nc|ENSG00000104936|Q09013-5|DMPK	nc|ENSG00000104936|Q09013-12|DMPK	nc|ENSG00000104936|Q09013-12|DMPK	MULTI-MSMS	OvCa99_classI_Rep5	1	531.7662353515625	2	531.766049	1061.51754	-0.3754	-0.00019962	-0.11198	-5.9546E-05	-0.48738	-0.00025917	531.7658730144288	39.082	0.66856	39.082	38.836	39.505	0					38	14	3	0	0	0	0.57734	1	2261	2261		68.787	6.6794	1	1970200			45985	2408	38085	38108	49431	49431		79			-0.010753951594551836
QLQFFLSL	8	Unmodified	_QLQFFLSL_					0	0	0		ENST00000506314.1_1_4:109096892-109097045:+|nuORF	ENST00000506314.1_1_4:109096892-109097045:+|nuORF	ENST00000506314.1_1_4:109096892-109097045:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.94464111328125	2	498.28166	994.548768	-0.9425	-0.00046963	-2.9593	-0.0014746	-3.9018	-0.0019442	498.27995411491673	81.752	1.2601	79.069	78.816	80.076	-2.6829					42	25	2	0	0	0	0.028476	1	6716	6716		51.335	0	1	87679			45986	12906	38086	38109	49432	49432					0.051275459369549026
QLQFLINEGAL	11	Unmodified	_QLQFLINEGAL_					0	0	0		STXBP5L|p.E352Kfs*10|1|0.13|ENSG00000145087|chr3:121223096-121223096|A/-|frameshift_variant;nc|ENSG00000164506|Q5T5C0-3|STXBP5;nc|ENSG00000164506|Q5T5C0-2|STXBP5;ENSG00000164506|ENST00000321680|STXBP5;ENSG00000145087|ENST00000471454|STXBP5L;nc|ENSG00000145087|Q9Y2K9|STXBP5L	STXBP5L|p.E352Kfs*10|1|0.13|ENSG00000145087|chr3:121223096-121223096|A/-|frameshift_variant	STXBP5L|p.E352Kfs*10|1|0.13|ENSG00000145087|chr3:121223096-121223096|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	415.8980712890625	3	415.899439	1244.67649	0.72679	0.00030227	-3.8756	-0.0016118	-3.1488	-0.0013096	415.8977783597815	32.63	0.73559	32.63	32.254	32.989	0					27	14	3	0	0	0	0.53283	1	1441	1441		50.791	0.75773	1	492990			45987	5201	38087	38110	49433	49433					0.06393641740328349
QLQFPAPD	8	Unmodified	_QLQFPAPD_					0	0	0		ENST00000551692.5_1_14:105849190-105849851:+|nuORF	ENST00000551692.5_1_14:105849190-105849851:+|nuORF	ENST00000551692.5_1_14:105849190-105849851:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.75177001953125	2	458.232168	914.449782	-0.18998	-8.7054E-05	2.0588	0.00094339	1.8688	0.00085634	458.2335792641032	64.499	0.37778	64.499	64.294	64.672	0					16	8	2	0	0	0	0.028476	1	5886	5886		18.324	0.95945	1	495040			45988	13602	38088	38111	49434	49434					-0.01086477027968158
QLQGAFRL	8	Unmodified	_QLQGAFRL_					0	0	0		nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2	nc|ENSG00000130589|Q9BYK8-2|HELZ2	nc|ENSG00000130589|Q9BYK8-2|HELZ2	MULTI-MSMS	OvCa99_classI_Rep5	1	466.77044677734375	2	466.769252	931.52395	1.2843	0.00059946	0.7942	0.00037071	2.0785	0.00097017	466.7694287199019	83.486	1.1026	83.486	82.906	84.009	0					44	25	3	0	0	0	0.60331	1	8678	8678		63.306	19.189	1	972280			45989	3995	38089	38112	49435	49435					0.05544910854234786
QLQGLMTAG	9	Unmodified	_QLQGLMTAG_					0	0	0		ENST00000529646.5_1_11:49214323-49229873:-|nuORF	ENST00000529646.5_1_11:49214323-49229873:-|nuORF	ENST00000529646.5_1_11:49214323-49229873:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.74920654296875	2	459.739302	917.464052	-0.69057	-0.00031748	-2.4089	-0.0011075	-3.0995	-0.001425	459.7379369142688	70.307	0.39537	70.307	70.17	70.565	0					11	9	2	0	0	0	0.027462	1	6767	6767		10.265	0	1	282160			45990	13277	38090	38113	49436	49436					0.0020185212869137104
QLQIHERTHS	10	Unmodified	_QLQIHERTHS_					0	0	0		ENSG00000132010|ENST00000334213|ZNF20	ENSG00000132010|ENST00000334213|ZNF20	ENSG00000132010|ENST00000334213|ZNF20	MULTI-MSMS	OvCa99_classI_Rep5	1	624.8238525390625	2	624.825818	1247.63708	1.3526	0.00084517	-2.5961	-0.0016221	-1.2434	-0.00077694	624.8239493748455	103.15	0.70736	103.15	102.89	103.6	0					36	16	3	0	0	0	0.45822	1	11522	11522		60.118	1.872	1	1616300			45991	4106	38091	38114	49437	49437					0.023169345094629534
QLQIRRSK	8	Unmodified	_QLQIRRSK_					0	0	0		ENSG00000176979|ENST00000512596|TRIM60	ENSG00000176979|ENST00000512596|TRIM60	ENSG00000176979|ENST00000512596|TRIM60	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7936401367188	2	514.819807	1027.62506	1.9775	0.001018	2.8116	0.0014475	4.7891	0.0024655	514.820839140854	77.02	1.6779	77.02	76.036	77.714	0					48	40	3	0	0	0	0.028476	1	7706	7706		29.15	1.2673	1	608790			45992	7647	38092	38115	49438	49438					0.1123536255693125
QLQIRRSK	8	Unmodified	_QLQIRRSK_					0	0	0		ENSG00000176979|ENST00000512596|TRIM60	ENSG00000176979|ENST00000512596|TRIM60	ENSG00000176979|ENST00000512596|TRIM60	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.819807	1027.62506	0.28447	0.00014645	3.0899	0.0015907	3.3743	0.0017372	514.8207650933737	79.015	0.5208	77.275	77.097	77.617	-1.7398	0.093196	-3.9013E-06	NaN	27.882	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25235			45993	7647	38092	38115							0.1123536255693125
QLQIRRSK	8	Unmodified	_QLQIRRSK_					0	0	0		ENSG00000176979|ENST00000512596|TRIM60	ENSG00000176979|ENST00000512596|TRIM60	ENSG00000176979|ENST00000512596|TRIM60	MULTI-MATCH	OvCa9_classI_Rep3	3		2	514.819807	1027.62506	0.72376	0.00037261	3.3136	0.0017059	4.0374	0.0020785	514.8210156969857	79.571	0.3589	77.231	77.053	77.412	-2.3399	0.049311	0.00022646	NaN	27.882	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27479			45994	7647	38092	38115							0.1123536255693125
QLQIRRSK	8	Unmodified	_QLQIRRSK_					0	0	0		ENSG00000176979|ENST00000512596|TRIM60	ENSG00000176979|ENST00000512596|TRIM60	ENSG00000176979|ENST00000512596|TRIM60	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	514.819807	1027.62506	-0.74333	-0.00038268	4.2957	0.0022115	3.5524	0.0018288	515.3243655952201	79.952	0.39147	77.201	77.034	77.425	-2.7514	0.01902	0.0012377	NaN	27.882	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27731			45995	7647	38092	38115							0.1123536255693125
QLQKDSSKI	9	Unmodified	_QLQKDSSKI_					0	0	0		nc|ENSG00000164627|Q6ZMV9-3|KIF6;ENSG00000164627|ENST00000287152|KIF6	nc|ENSG00000164627|Q6ZMV9-3|KIF6	nc|ENSG00000164627|Q6ZMV9-3|KIF6	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.3395385742188	2	523.795663	1045.57677	1.3017	0.00068181	-0.67206	-0.00035202	0.62962	0.00032979	523.7950537770122	79.538	0.31439	79.538	79.352	79.666	0					12	7	2	0	0	0	0.027453	1	8099	8099		37.812	12.361	1	323040			45996	6471	38093	38116	49439	49439					0.055808241263775926
QLQKGDEFVL	10	Unmodified	_QLQKGDEFVL_					0	0	0		ENSG00000162761|ENST00000342310|LMX1A	ENSG00000162761|ENST00000342310|LMX1A	ENSG00000162761|ENST00000342310|LMX1A	MULTI-MSMS	OvCa9_classI_Rep3	3	588.8167724609375	2	588.816596	1175.61864	-0.63539	-0.00037413	0.48748	0.00028704	-0.1479	-8.7089E-05	588.8167831837943	129.05	0.98856	127.95	127.56	128.55	-1.1011					50	19	4	0	0	0	0.69073	1	10207	10207		31.53	3.6476	1	135200			45997	6229	38094	38117	49440	49440					0.037853798148944406
QLQKKQNER	9	Unmodified	_QLQKKQNER_					0	0	0			REV__ARHGAP18|p.K164Nfs*54|1|0.37|ENSG00000146376|chr6:129638454-129638454|T/-|frameshift_variant	REV__ARHGAP18|p.K164Nfs*54|1|0.37|ENSG00000146376|chr6:129638454-129638454|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	585.8682250976562	2	586.330736	1170.64692	-1.3539	-0.00079385	-2.2311	-0.0013082	-3.585	-0.002102	586.3293754214315	53.821	0.89519	51.007	50.578	51.473	-2.8139					27	17	2	0	0	0	0.027462	1	3649	3649		21.96	0	1	23973	+		45998	15651	38095	38118	49441	49441					0.06842122514831317
QLQKWIRGN	9	Unmodified	_QLQKWIRGN_					0	0	0		TOR1B|p.D201Ifs*23|1|0.03|ENSG00000136816|chr9:129807322-129807323|-/ATCTC|frameshift_variant;TOR1B|p.V200Dfs*25|1|0.04|ENSG00000136816|chr9:129807320-129807321|-/ACCCGCTA|frameshift_variant;ENSG00000136816|ENST00000259339|TOR1B	TOR1B|p.D201Ifs*23|1|0.03|ENSG00000136816|chr9:129807322-129807323|-/ATCTC|frameshift_variant	TOR1B|p.D201Ifs*23|1|0.03|ENSG00000136816|chr9:129807322-129807323|-/ATCTC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.7815551757812	2	571.825089	1141.63563	2.3461	0.0013415	1.1879	0.00067927	3.534	0.0020208	571.8262308252515	106.18	0.61372	106.18	105.97	106.58	0					32	13	4	0	0	0	0.027462	1	11976	11976		27.882	7.8855	1	751850			45999	4518	38096	38119	49442	49442					0.07047345211367428
QLQLFDWDE	9	Unmodified	_QLQLFDWDE_					0	0	0			REV__ENSG00000148606|ENST00000372371|POLR3A	REV__ENSG00000148606|ENST00000372371|POLR3A	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.8026123046875	2	597.277303	1192.54005	2.5988	0.0015522	0.39973	0.00023875	2.9986	0.001791	597.2775274260398	115.75	0.5643	115.75	115.35	115.91	0					17	11	2	0	0	0	0.027462	1	13246	13246		23.042	13.86	1	107220	+		46000	20118	38097	38120	49443	49443					-0.04851472490190645
QLQLLGPSV	9	Unmodified	_QLQLLGPSV_					0	0	0			REV__ENST00000536693.1_2_17:65989185-65989404:-|nuORF	REV__ENST00000536693.1_2_17:65989185-65989404:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.7864990234375	2	477.784567	953.554582	-0.37968	-0.0001814	0.24244	0.00011584	-0.13723	-6.5567E-05	477.7846322919029	52.85	1.9246	49.642	49.298	51.222	-3.208					72	37	3	0	0	0	0.50149	1	3220	3220		42.396	0	1	1085400	+		46001	27303	38098	38121	49444	49444					0.07594644448613508
QLQLPGYLP	9	Unmodified	_QLQLPGYLP_					0	0	0		ENST00000519574.1_1_2:219125758-219128073:+|nuORF	ENST00000519574.1_1_2:219125758-219128073:+|nuORF	ENST00000519574.1_1_2:219125758-219128073:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.8256225585938	2	514.792392	1027.57023	2.4341	0.001253	-3.4251	-0.0017632	-0.99104	-0.00051018	514.7904016483934	94.38	0.68121	94.38	94.051	94.732	0					20	15	3	0	0	0	0.027449	1	10243	10243		40.573	0	1	206610			46002	13088	38099	38122	49445	49445					0.057549309656678815
QLQLPVGSI	9	Unmodified	_QLQLPVGSI_					0	0	0			REV__CD244|p.Q177Rfs*36|1|0.04|ENSG00000122223|chr1:160841351-160841351|G/-|frameshift_variant	REV__CD244|p.Q177Rfs*36|1|0.04|ENSG00000122223|chr1:160841351-160841351|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	477.7851867675781	2	477.784567	953.554582	-1.3623	-0.00065089	1.0601	0.00050652	-0.30217	-0.00014437	477.78500123500345	52.573	1.6304	49.76	49.196	50.826	-2.8129					73	32	4	0	0	0	0.48324	1	3529	3529		44.117	3.5442	1	300580	+		46003	15760	38100	38123	49446	49446					0.07594644448624877
QLQLSPQRLSL	11	Unmodified	_QLQLSPQRLSL_					0	0	0		ENST00000587730.5_1_19:14520811-14521537:-|nuORF	ENST00000587730.5_1_19:14520811-14521537:-|nuORF	ENST00000587730.5_1_19:14520811-14521537:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	428.26959228515625	3	428.254105	1281.74048	0.51562	0.00022081	1.9156	0.00082036	2.4312	0.0010412	428.25550807499354	57.529	0.66284	54.184	53.985	54.647	-3.3449					19	12	2	0	0	0	0.025955	1	3735	3735		18.531	0	1	12525			46004	14068	38101	38124	49447	49447					0.11088421897284206
QLQNDGRHC	9	Unmodified	_QLQNDGRHC_					0	0	0			REV__sp|Q6SW59|PP65_HCMVM65kDaphosphoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL83PE=1SV=1	REV__sp|Q6SW59|PP65_HCMVM65kDaphosphoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL83PE=1SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3214111328125	2	535.743439	1069.47233	-0.86169	-0.00046164	-3.986	-0.0021355	-4.8477	-0.0025971	535.7408875812853	64.241	0.45287	64.241	64.091	64.544	0					15	10	2	0	0	0	0.027433	1	5856	5856		60.972	5.4677	1	399320	+		46005	29415	38102	38125	49448	49448					-0.05963200901987875
QLQNHSLDL	9	Unmodified	_QLQNHSLDL_					0	0	0			REV__ENSG00000185245|ENST00000329125|GP1BA	REV__ENSG00000185245|ENST00000329125|GP1BA	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.7850952148438	2	534.277638	1066.54072	1.6946	0.00090541	2.2233	0.0011879	3.9179	0.0020933	534.2780125460306	126.8	0.62611	126.8	126.56	127.18	0					28	13	4	0	0	0	0.027462	1	14665	14665		14.137	0	1	103120	+		46006	22489	38103	38126	49449	49449					0.010113669495240174
QLQNVEDAR	9	Unmodified	_QLQNVEDAR_					0	0	0		ENST00000438379.1_1_7:2875266-2875587:+|nuORF	ENST00000438379.1_1_7:2875266-2875587:+|nuORF	ENST00000438379.1_1_7:2875266-2875587:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2481689453125	2	536.772719	1071.53089	0.013952	7.4893E-06	0.45779	0.00024573	0.47174	0.00025322	537.2734309174682	46.805	0.26371	46.805	46.631	46.894	0					10	5	2	0	0	0	0.027462	1	3335	3335		34.173	0	1	63230			46007	11896	38104	38127	49450	49450					-0.0020182105588446575
QLQPLSDPL	9	Unmodified	_QLQPLSDPL_					0	0	0			REV__ENST00000244050.2_1_20:48604622-48604739:+|nuORF	REV__ENST00000244050.2_1_20:48604622-48604739:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.32513427734375	2	505.779482	1009.54441	-0.54105	-0.00027365	0.69898	0.00035353	0.15793	7.9879E-05	505.7799516663763	105.74	0.75723	103.72	103.4	104.16	-2.0161					22	14	2	0	0	0	0.027462	1	9656	9656		30.504	0	1	24826	+		46008	23828	38105	38128	49451	49451					0.04002036723386482
QLQQQLAP	8	Unmodified	_QLQQQLAP_					0	0	0			REV__ENST00000592414.1_1_19:3053819-3054095:-|nuORF	REV__ENST00000592414.1_1_19:3053819-3054095:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.22564697265625	2	463.258717	924.50288	-0.18538	-8.5878E-05	1.3947	0.0006461	1.2093	0.00056022	463.2592804818262	58.759	0.52708	58.759	58.446	58.973	0					24	12	3	0	0	0	0.028476	1	5006	5006		42.474	6.8562	1	294430	+		46009	27951	38106	38129	49452	49452					0.037609007547075635
QLQRKRRDE	9	Unmodified	_QLQRKRRDE_					0	0	0		nc|ENSG00000130956|Q5JVS0-2|HABP4;HABP4|p.Y388Mfs*8|1|0.07|ENSG00000130956|chr9:96488251-96488251|T/-|frameshift_variant;ENSG00000130956|ENST00000375249|HABP4	nc|ENSG00000130956|Q5JVS0-2|HABP4	nc|ENSG00000130956|Q5JVS0-2|HABP4	MULTI-MSMS	OvCa9_classI_Rep4_	4	614.8512573242188	2	614.847084	1227.67962	-0.5212	-0.00032046	2.0073	0.0012342	1.486	0.00091369	614.8483661587021	80.259	1.2738	77.548	77.22	78.494	-2.7106					67	25	5	0	0	0	0.50149	1	6555	6555		42.396	7.2441	1	468080			46010	4029	38107	38130	49453	49453					0.07488329637703828
QLQRLFGP	8	Unmodified	_QLQRLFGP_					0	0	0			REV__nc|ENSG00000172830|Q8TE77-2|SSH3	REV__nc|ENSG00000172830|Q8TE77-2|SSH3	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.7825927734375	2	479.777077	957.5396	-0.85653	-0.00041094	1.9004	0.00091177	1.0439	0.00050082	479.77806073188395	65.924	0.58633	65.924	65.625	66.212	0					28	14	3	0	0	0	0.028476	1	6074	6074		20.482	1.1219	1	4179900	+		46011	21729	38108	38131	49454	49454					0.05913197371273782
QLQRRGRRYLY	11	Unmodified	_QLQRRGRRYLY_					0	0	0			REV__ENSG00000205138|ENST00000378887|SDHAF1	REV__ENSG00000205138|ENST00000378887|SDHAF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.7781982421875	3	503.623414	1507.84841	-0.57608	-0.00029013	-2.7105	-0.0013651	-3.2866	-0.0016552	503.6220210229066	21.652	1.1127	20.313	20.017	21.13	-1.3386					43	21	3	0	0	0	0.026277	1	230	230		8.7993	5.588	1	165060	+		46012	23204	38109	38132	49455	49455					0.11480231271229968
QLQSCMEF	8	Unmodified	_QLQSCMEF_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.28729248046875	2	493.209521	984.404488	-0.69268	-0.00034164	3.875	0.0019112	3.1823	0.0015696	493.21123686237087	43.398	0.29427	43.398	43.227	43.521	0					10	6	2	0	0	0	0.028476	1	2869	2869		12.207	0	1	68317	+		46013	21477	38110	38133	49456	49456					-0.08833786877005423
QLQSLKASYTK	11	Unmodified	_QLQSLKASYTK_					0	0	0			REV__chr1:156134975-156135292|96|26.54|0.12|7.75|+|0|LMNA,None|1	REV__chr1:156134975-156135292|96|26.54|0.12|7.75|+|0|LMNA,None|1	MULTI-SECPEP	OvCa9_classI_Rep3	3	422.91973876953125	3	422.906594	1265.69795	-0.024293	-1.0274E-05	2.3144	0.00097879	2.2901	0.00096852	422.9070177451887	75.995	0.30674	73.623	73.518	73.825	-2.3715					8	5	2	0	0	0	0.025423	1	3873	3873		28.384	5.8041	1	8661.6	+		46014	15807	38111	38134	49457	49457					0.0757302676904601
QLQTNRAR	8	Unmodified	_QLQTNRAR_					0	0	0		nc|ENSG00000159374|Q8TC57-4|M1AP;chr2:74558874-74560151|392|13.59|0.42|5.03|-|ENST00000536235|M1AP,M1AP;ENSG00000159374|ENST00000421985|M1AP;nc|ENSG00000159374|Q8TC57-3|M1AP;ENST00000464686.5_1_2:74785845-74804048:-|nuORF;SFXN5-C2orf65|1|fusion	nc|ENSG00000159374|Q8TC57-4|M1AP	nc|ENSG00000159374|Q8TC57-4|M1AP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.76715087890625	2	493.778139	985.541725	-0.013052	-6.4448E-06	2.4242	0.001197	2.4112	0.0011906	493.77846182245537	58.422	0.9525	55.03	54.448	55.4	-3.392					22	18	2	0	0	0	0.028476	1	3815	3815		27.882	0	1	25139			46015	447	38112	38135	49458	49458					0.04837626109087978
QLQVQTAL	8	Unmodified	_QLQVQTAL_					0	0	0		ENST00000357508.5_1_1:45190567-45191072:+|nuORF	ENST00000357508.5_1_1:45190567-45191072:+|nuORF	ENST00000357508.5_1_1:45190567-45191072:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.2702941894531	2	450.761092	899.507631	0.62968	0.00028383	1.4558	0.00065622	2.0855	0.00094005	450.76187801514334	62.007	0.23792	58.549	58.429	58.667	-3.4577					6	4	2	0	0	0	0.028476	1	4273	4273		53.351	0	1	113660			46016	10718	38113	38136	49459	49459					0.053857848974644185
QLQVTQEQL	9	Unmodified	_QLQVTQEQL_					0	0	0			REV__ENSG00000047410|ENST00000367478|TPR	REV__ENSG00000047410|ENST00000367478|TPR	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.3377075195312	2	543.793121	1085.57169	-1.4073	-0.0007653	0.96398	0.00052421	-0.44336	-0.00024109	543.7933054901422	64.03	0.89576	64.03	63.607	64.503	0					30	21	2	0	0	0	0.027426	1	5839	5839		76.774	0	1	1562700	+		46017	16656	38114	38137	49460	49460					0.032325202637593975
QLQYHKLT	8	Unmodified	_QLQYHKLT_					0	0	0			REV__ENSG00000080503|ENST00000349721|SMARCA2	REV__ENSG00000080503|ENST00000349721|SMARCA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7928466796875	2	515.787641	1029.56073	1.8591	0.0009589	-3.6901	-0.0019033	-1.831	-0.0009444	515.785482173053	82.243	0.45969	82.243	82.02	82.479	0					15	10	2	0	0	0	0.028476	1	8495	8495		17.365	0	1	345810	+		46018	17055	38115	38138	49461	49461					0.04713162680127425
QLRARLTR	8	Unmodified	_QLRARLTR_					0	0	0			REV__chr8:127290060-127311920|177|24.08|0.02|9.95|-|1|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311920,127315431|CASC8,None|60	REV__chr8:127290060-127311920|177|24.08|0.02|9.95|-|1|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311920,127315431|CASC8,None|60	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.288330078125	2	507.319974	1012.6254	-1.029	-0.00052205	3.6934	0.0018737	2.6643	0.0013517	507.3222485653075	121.37	0.59343	121.17	121	121.59	-0.19718					18	11	2	0	0	0	0.028476	1	11713	11713		14.137	0	1	13764	+		46019	16106	38116	38139	49462	49462					0.11958782276769853
QLREAQFF	8	Unmodified	_QLREAQFF_					0	0	0			REV__tr|A0A553SU59|A0A553SU59_NIACIGlycosidehydrolasefamily5domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06280PE=4SV=1	REV__tr|A0A553SU59|A0A553SU59_NIACIGlycosidehydrolasefamily5domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06280PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3171997070312	2	519.771991	1037.52943	-0.40907	-0.00021262	4.3879	0.0022807	3.9788	0.0020681	520.2746720084141	57.954	1.0614	54.609	54.086	55.148	-3.3449					37	20	3	0	0	0	0.028476	1	3831	3831		23.042	0	1	39091	+		46020	31040	38117	38140	49463	49463					0.012165896460373915
QLREASAEAA	10	Unmodified	_QLREASAEAA_					0	0	0			REV__nc|ENSG00000184937|P19544-8|WT1	REV__nc|ENSG00000184937|P19544-8|WT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.7921142578125	2	523.26727	1044.51999	-0.61438	-0.00032148	2.7784	0.0014539	2.1641	0.0011324	523.2685214611564	40.933	0.26389	40.933	40.795	41.059	0					8	5	2	0	0	0	0.026674	1	2507	2507		47.96	28.856	1	61835	+		46021	22461	38118	38141	49464	49464					-0.0004922343014186481
QLREELDP	8	Unmodified	_QLREELDP_					0	0	0			REV__NOC4L-ASPSCR1|2|fusion;REV__nc|ENSG00000169696|Q9BZE9-4|ASPSCR1	REV__nc|ENSG00000169696|Q9BZE9-4|ASPSCR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.2781066894531	2	500.258914	998.503274	-0.41076	-0.00020548	-0.022849	-1.143E-05	-0.4336	-0.00021691	500.2584347453696	49.087	0.3943	49.087	48.851	49.245	0					12	8	2	0	0	0	0.028476	1	3612	3612		12.959	0	1	125080	+		46022	28995;28996	38119	38142	49465	49465					0.003962756838859605
QLRELQLR	8	Unmodified	_QLRELQLR_					0	0	0		PCDHGA7|p.L604Ifs*113|1|0.17|ENSG00000253537|chr5:141384708-141384709|-/ATAGACGTGGAAATAATAGATATTAATGACAA|frameshift_variant;nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7;ENSG00000253537|ENST00000518325|PCDHGA7	PCDHGA7|p.L604Ifs*113|1|0.17|ENSG00000253537|chr5:141384708-141384709|-/ATAGACGTGGAAATAATAGATATTAATGACAA|frameshift_variant	PCDHGA7|p.L604Ifs*113|1|0.17|ENSG00000253537|chr5:141384708-141384709|-/ATAGACGTGGAAATAATAGATATTAATGACAA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.2958984375	2	528.31964	1054.62473	0.097317	5.1414E-05	1.1627	0.0006143	1.2601	0.00066571	528.3201042723114	71.857	0.66208	71.857	71.629	72.291	0					23	15	2	0	0	0	0.028476	1	6952	6952		85.359	19.556	1	737900			46023	9433	38120	38143	49466	49466					0.09959942837076596
QLREQWLH	8	Unmodified	_QLREQWLH_					0	0	0			REV__ENSG00000137877|ENST00000320955|SPTBN5	REV__ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MSMS	OvCa99_classI_Rep5	1	555.299560546875	2	555.296165	1108.57778	-0.025213	-1.4001E-05	3.259	0.0018097	3.2338	0.0017957	555.2980022278747	56.396	2.0095	56.396	55.723	57.732	0					129	47	4	0	0	0	0.61436	1	4697	4697		60.972	0.67798	1	7892400	+		46024	19493	38121	38144	49467	49467					0.02783083285930843
QLRERADDP	9	Unmodified	_QLRERADDP_					0	0	0		nc|ENSG00000160949|Q96HA7-2|TONSL;ENSG00000160949|ENST00000409379|TONSL	nc|ENSG00000160949|Q96HA7-2|TONSL	nc|ENSG00000160949|Q96HA7-2|TONSL	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.3021850585938	2	550.278169	1098.54179	1.3255	0.00072941	-1.8781	-0.0010335	-0.55259	-0.00030408	550.2771941393393	113.86	0.63155	113.86	113.61	114.24	0					29	13	3	0	0	0	0.027461	1	12981	12981		32.812	0	1	308230			46025	6106	38122	38145	49468	49468					-0.0035441868158159195
QLRETPFRKRY	11	Unmodified	_QLRETPFRKRY_					0	0	0		tr|A0A553SLE6|A0A553SLE6_NIACICitratelyasesubunitbetaOS=NialliacirculansOX=1397GN=CEQ21_20495PE=4SV=1	tr|A0A553SLE6|A0A553SLE6_NIACICitratelyasesubunitbetaOS=NialliacirculansOX=1397GN=CEQ21_20495PE=4SV=1	tr|A0A553SLE6|A0A553SLE6_NIACICitratelyasesubunitbetaOS=NialliacirculansOX=1397GN=CEQ21_20495PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.2884216308594	3	498.616037	1492.82628	-0.94254	-0.00046996	-1.3551	-0.00067567	-2.2976	-0.0011456	498.61578104764646	80.301	0.58627	77.59	77.417	78.003	-2.7106					17	11	2	0	0	0	0.026113	1	6584	6584		30.569	12.736	1	25603			46026	33713	38123	38146	49469	49469					0.09958006802776254
QLRETPFRKRY	11	Unmodified	_QLRETPFRKRY_					0	0	0		tr|A0A553SLE6|A0A553SLE6_NIACICitratelyasesubunitbetaOS=NialliacirculansOX=1397GN=CEQ21_20495PE=4SV=1	tr|A0A553SLE6|A0A553SLE6_NIACICitratelyasesubunitbetaOS=NialliacirculansOX=1397GN=CEQ21_20495PE=4SV=1	tr|A0A553SLE6|A0A553SLE6_NIACICitratelyasesubunitbetaOS=NialliacirculansOX=1397GN=CEQ21_20495PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		3	498.616037	1492.82628	-0.18882	-9.4148E-05	-1.2453	-0.00062092	-1.4341	-0.00071507	498.61550192327786	80.326	0.61225	77.986	77.759	78.371	-2.3399	0.22625	0.00053512	NaN	30.569	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18505			46027	33713	38123	38146							0.09958006802776254
QLREVAERER	10	Unmodified	_QLREVAERER_					0	0	0			REV__ENSG00000164061|ENST00000296452|BSN	REV__ENSG00000164061|ENST00000296452|BSN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	429.2632141113281	3	429.237225	1284.68985	-0.26213	-0.00011252	-0.15861	-6.808E-05	-0.42073	-0.0001806	429.23715904173906	41.347	0.8319	38.366	38.127	38.959	-2.9804					41	15	3	0	0	0	0.027006	1	1819	1819		9.2118	0	1	82795	+		46028	20930	38124	38147	49470	49470					0.05888892572284021
QLREVLQP	8	Unmodified	_QLREVLQP_					0	0	0		ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	ENSG00000205413|ENST00000379958|SAMD9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.77777099609375	2	491.787641	981.56073	0.44085	0.0002168	-2.1495	-0.0010571	-1.7087	-0.00084031	491.7868781952193	75.607	1.0597	72.668	72.352	73.412	-2.9389					33	21	2	0	0	0	0.028476	1	6047	6047		32.812	3.6629	1	382100			46029	9072	38125	38148	49471	49471					0.06921162680123416
QLRKAAKLH	9	Unmodified	_QLRKAAKLH_					0	0	0		ENST00000464690.5_1_3:120129559-120169830:-|nuORF	ENST00000464690.5_1_3:120129559-120169830:-|nuORF	ENST00000464690.5_1_3:120129559-120169830:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.8095092773438	2	532.838	1063.66145	-1.4037	-0.00074796	-2.3637	-0.0012595	-3.7674	-0.0020074	532.836356795604	96.058	1.2169	93.632	93.154	94.371	-2.4256					59	23	4	0	0	0	0.027462	1	8484	8484		45.952	23.992	1	224390			46030	12261	38126	38149	49472	49472					0.1321623945364081
QLRKLTEEV	9	Unmodified	_QLRKLTEEV_					0	0	0			REV__nc|ENSG00000125971|Q9NP97-2|DYNLRB1	REV__nc|ENSG00000125971|Q9NP97-2|DYNLRB1	MULTI-MSMS	OvCa99_classI_Rep5	1	558.3280029296875	2	558.324588	1114.63462	0.1225	6.8393E-05	-0.7095	-0.00039613	-0.587	-0.00032774	558.3242172343458	53.053	0.94603	53.053	52.828	53.774	0					38	21	4	0	0	0	0.043101	1	4190	4190		124.08	0	1	2270300	+		46031	18764	38127	38150	49473	49473					0.08189086051788763
QLRLLCHVL	9	Unmodified	_QLRLLCHVL_					0	0	0		ENST00000392553.2_1_14:105715530-105715764:+|nuORF	ENST00000392553.2_1_14:105715530-105715764:+|nuORF	ENST00000392553.2_1_14:105715530-105715764:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	547.8263549804688	2	547.828786	1093.64302	-6.0458	-0.003312	1.7537	0.00096071	-4.2921	-0.0023513	547.8295905768617	154.78	1.79	153.77	152.92	154.71	-1.0076					93	40	3	0	0	0	0.67509	1	13306	13306		23.042	3.012	1	69775			46032	11229	38128	38151	49474	49474					0.0999436148742916
QLRMRKEP	8	Unmodified	_QLRMRKEP_					0	0	0			REV__ENSG00000133997|ENST00000256379|MED6	REV__ENSG00000133997|ENST00000256379|MED6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.2941284179688	2	529.300393	1056.58623	-1.8823	-0.00099629	1.6296	0.00086254	-0.25267	-0.00013374	529.8009061005083	45.057	0.77481	42.019	41.663	42.438	-3.0385					20	14	2	0	0	0	0.028476	1	2279	2279		24.203	0	1	23781	+		46033	19166	38129	38152	49475	49475					0.0602031393091238
QLRNALIP	8	Unmodified	_QLRNALIP_					0	0	0		tr|A0A7D6W194|A0A7D6W194_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02915PE=3SV=1	tr|A0A7D6W194|A0A7D6W194_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02915PE=3SV=1	tr|A0A7D6W194|A0A7D6W194_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02915PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	463.2922058105469	2	462.784902	923.55525	1.6208	0.00075006	0.56323	0.00026065	2.184	0.0010107	462.7850419750077	93.228	0.3736	93.228	93.053	93.426	0					11	8	2	0	0	0	0.028476	1	10123	10123		24.203	11.244	1	320690			46034	35404	38130	38153	49476	49476					0.09041483888313451
QLRNHIRSRS	10	Unmodified	_QLRNHIRSRS_					0	0	0		ENSG00000197860|ENST00000381007|SGTB	ENSG00000197860|ENST00000381007|SGTB	ENSG00000197860|ENST00000381007|SGTB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	422.9256286621094	3	422.909443	1265.7065	-0.46391	-0.00019619	3.247	0.0013732	2.7831	0.001177	422.9107440178772	39.771	0.64635	36.817	36.566	37.213	-2.9541					23	12	3	0	0	0	0.027281	1	1667	1667		25.126	8.4086	1	34513			46035	8754	38131	38154	49477	49477					0.08427438248895669
QLRPQAALPS	10	Unmodified	_QLRPQAALPS_					0	0	0		ENST00000480561.5_1_3:48636882-48638270:-|nuORF	ENST00000480561.5_1_3:48636882-48638270:-|nuORF	ENST00000480561.5_1_3:48636882-48638270:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.804443359375	2	540.811648	1079.60874	-1.4198	-0.00076784	0.2691	0.00014553	-1.1507	-0.00062231	541.313045487445	80.619	0.48494	77.909	77.665	78.15	-2.7106					15	9	2	0	0	0	0.027028	1	6569	6569		31.53	8.0071	1	34524			46036	12534	38132	38155	49478	49478					0.07212236600162214
QLRPQAALPS	10	Unmodified	_QLRPQAALPS_					0	0	0		ENST00000480561.5_1_3:48636882-48638270:-|nuORF	ENST00000480561.5_1_3:48636882-48638270:-|nuORF	ENST00000480561.5_1_3:48636882-48638270:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	540.811648	1079.60874	-0.33896	-0.00018331	-0.54957	-0.00029721	-0.88853	-0.00048053	540.8112557697887	79.573	0.5108	77.877	77.662	78.173	-1.6951	-0.053237	-7.5247E-05	NaN	18.262	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26758			46037	12534	38132	38155							0.07212236600162214
QLRPQAALPS	10	Unmodified	_QLRPQAALPS_					0	0	0		ENST00000480561.5_1_3:48636882-48638270:-|nuORF	ENST00000480561.5_1_3:48636882-48638270:-|nuORF	ENST00000480561.5_1_3:48636882-48638270:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	540.811648	1079.60874	0.60573	0.00032759	-1.0033	-0.0005426	-0.39757	-0.00021501	540.8110845158399	80.341	0.56151	78.006	77.815	78.376	-2.3352	0.0751	-0.00056602	NaN	18.262	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25518			46038	12534	38132	38155							0.07212236600162214
QLRQQDVK	8	Unmodified	_QLRQQDVK_					0	0	0			REV__ENST00000409898.2_1_2:87755089-87882863:+|nuORF	REV__ENST00000409898.2_1_2:87755089-87882863:+|nuORF	MSMS	OvCa99_classI_Rep5	1	507.787841796875	2	507.788173	1013.56179	NaN	NaN	NaN	NaN	NaN	NaN	NaN	32.599	1	32.599	32.099	33.099	0								0	0	0	0.30129	1	1433	1433		60.972	5.4677	1		+		46039	25461	38133	38156	49479	49479					0.05555377049040544
QLRQRAQI	8	Unmodified	_QLRQRAQI_					0	0	0			REV__ENSG00000176714|ENST00000324364|CCDC121	REV__ENSG00000176714|ENST00000324364|CCDC121	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.26727294921875	2	506.804157	1011.59376	-1.1179	-0.00056655	3.058	0.0015498	1.9401	0.00098324	506.80559331105326	88.032	0.56689	85.901	85.545	86.112	-2.1309					19	10	2	0	0	0	0.028476	1	5293	5293		25.45	0	1	87669	+		46040	21965	38134	38157	49480	49480					0.08842789522839212
QLRQTALQQ	9	Unmodified	_QLRQTALQQ_					0	0	0		ENSG00000221890|ENST00000333039|NPTXR	ENSG00000221890|ENST00000333039|NPTXR	ENSG00000221890|ENST00000333039|NPTXR	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8189086914062	2	543.306729	1084.59891	0.0024655	1.3395E-06	4.1006	0.0022279	4.1031	0.0022292	543.8106853820059	57.049	0.98874	57.049	56.662	57.65	0					50	22	4	0	0	0	0.027402	1	4836	4836		87.754	13.499	1	1569200			46041	9232	38135	38158	49481	49481					0.059990485947992056
QLRQVVIQ	8	Unmodified	_QLRQVVIQ_					0	0	0			REV__ENST00000426250.3_1_12:72666801-72667203:-|nuORF	REV__ENST00000426250.3_1_12:72666801-72667203:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	492.3033752441406	2	492.303458	982.592364	-0.96942	-0.00047725	0.51259	0.00025235	-0.45683	-0.0002249	492.3035905974322	37.368	0.95969	37.368	37.023	37.983	0					42	20	3	0	0	0	0.23117	1	2044	2044		119.56	2.6532	1	1074200	+		46042	25663	38136	38159	49482	49482					0.10037155434076794
QLRRAARPLHV	11	Unmodified	_QLRRAARPLHV_					0	0	0		ENST00000565863.1_1_16:84109176-84124517:-|nuORF	ENST00000565863.1_1_16:84109176-84124517:-|nuORF	ENST00000565863.1_1_16:84109176-84124517:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	439.24786376953125	3	439.605583	1315.79492	-0.1793	-7.8823E-05	2.0681	0.00090913	1.8888	0.00083031	439.60648416985674	51.607	0.64372	48.794	48.502	49.146	-2.8129					26	12	3	0	0	0	0.02625	1	3419	3419		24.232	6.3987	1	11987			46043	13832	38137	38160	49483	49483					0.14965478559338408
QLRRFLHT	8	Unmodified	_QLRRFLHT_					0	0	0		ENST00000379463.6_1_16:66860654-66864856:-|nuORF	ENST00000379463.6_1_16:66860654-66864856:-|nuORF	ENST00000379463.6_1_16:66860654-66864856:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3214111328125	2	535.814525	1069.6145	0.13215	7.0806E-05	-2.9244	-0.0015669	-2.7923	-0.0014961	535.8133897231539	64.815	0.73626	64.815	64.375	65.111	0					25	17	2	0	0	0	0.028476	1	5856	5856		63.306	24.5	1	846550			46044	11126	38138	38161	49484	49484					0.08247379902491048
QLRRFLHT	8	Unmodified	_QLRRFLHT_					0	0	0		ENST00000379463.6_1_16:66860654-66864856:-|nuORF	ENST00000379463.6_1_16:66860654-66864856:-|nuORF	ENST00000379463.6_1_16:66860654-66864856:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	535.814525	1069.6145	-1.7423	-0.00093353	-0.5682	-0.00030445	-2.3105	-0.001238	535.8140593594858	67.63	0.78978	64.969	64.644	65.433	-2.661	0.048921	0.0011107	NaN	63.306	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52167			46045	11126	38138	38161							0.08247379902491048
QLRRFLHT	8	Unmodified	_QLRRFLHT_					0	0	0		ENST00000379463.6_1_16:66860654-66864856:-|nuORF	ENST00000379463.6_1_16:66860654-66864856:-|nuORF	ENST00000379463.6_1_16:66860654-66864856:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	535.814525	1069.6145	-0.45385	-0.00024318	-2.2706	-0.0012166	-2.7244	-0.0014598	535.813154820002	68.466	0.88525	64.976	64.769	65.654	-3.4902	0.055683	-0.00071366	NaN	63.306	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82765			46046	11126	38138	38161							0.08247379902491048
QLRRNKDFVTM	11	Unmodified	_QLRRNKDFVTM_					0	0	0			REV__ENSG00000178691|ENST00000322652|SUZ12	REV__ENSG00000178691|ENST00000322652|SUZ12	MULTI-MSMS	OvCa99_classI_Rep5	1	470.25726318359375	3	469.922361	1406.74525	0.28098	0.00013204	-2.987	-0.0014037	-2.706	-0.0012716	469.92057905157156	57.492	0.63747	57.492	57.221	57.859	0					44	14	4	0	0	0	0.69735	1	4843	4843		30.569	1.9921	1	719190	+		46047	22071	38139	38162	49485	49485					0.05814982768356458
QLRRNKDFVTM	11	Unmodified	_QLRRNKDFVTM_					0	0	0			REV__ENSG00000178691|ENST00000322652|SUZ12	REV__ENSG00000178691|ENST00000322652|SUZ12	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	469.922361	1406.74525	0.28098	0.00013204	-2.987	-0.0014037	-2.706	-0.0012716	469.92057905157156	57.492	0.63747	57.492	57.221	57.859	0	0	0	NaN	30.569	44	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	719190	+		46048	22071	38139	38162							0.05814982768356458
QLRRQSSAR	9	Unmodified	_QLRRQSSAR_					0	0	0			REV__ENST00000559551.5_1_14:24740317-24740742:-|nuORF	REV__ENST00000559551.5_1_14:24740317-24740742:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	551.3189086914062	2	551.31542	1100.61629	-0.56257	-0.00031016	2.0381	0.0011236	1.4755	0.00081348	551.3165723110063	53.108	2.3201	53.108	52.873	55.193	0					149	54	5	0	0	0	0.22621	1	4187	4187		71.877	7.6702	1	48498000	+		46049	27598	38140	38163	49486	49486					0.07000388920459955
QLRRREIQHRE	11	Unmodified	_QLRRREIQHRE_					0	0	0			REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2	REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.8100891113281	3	507.622073	1519.84439	1.4504	0.00073624	2.1134	0.0010728	3.5638	0.001809	507.62309894214684	88.512	1.2814	87.144	86.888	88.17	-1.3676					41	25	2	0	0	0	0.026101	1	7785	7785		26.75	2.5179	1	77284	+		46050	16309	38141	38164	49487	49487					0.10526141777518205
QLRRVHHLL	9	Unmodified	_QLRRVHHLL_					0	0	0			REV__ENSG00000282419|ENST00000632372|TEX13D	REV__ENSG00000282419|ENST00000632372|TEX13D	MULTI-SECPEP	OvCa9_classI_Rep4_	4	587.2952880859375	2	586.362173	1170.70979	-1.9312	-0.0011324	-2.6868	-0.0015755	-4.618	-0.0027078	586.3602528568815	119.66	0.89199	118.32	117.93	118.82	-1.3444					21	16	3	0	0	0	0.027462	1	11253	11253		24.203	0	1	16655	+		46051	23661	38142	38165	49488	49488					0.1312673309355432
QLRTFELTL	9	Unmodified	_QLRTFELTL_					0	0	0		nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7;ENSG00000254122|ENST00000398594|PCDHGB7;nc|ENSG00000276547|Q9Y5G0-2|PCDHGB5;ENSG00000276547|ENST00000617380|PCDHGB5	nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7	nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.8209838867188	2	560.821681	1119.62881	2.2393	0.0012558	-0.0594	-3.3313E-05	2.1799	0.0012225	560.8214302245749	108.92	0.87442	108.92	108.58	109.46	0					35	19	2	0	0	0	0.027433	1	12316	12316		37.812	12.237	1	1082700			46052	9443	38143	38166	49489	49489					0.07377987540144204
QLRTRDTLLKG	11	Unmodified	_QLRTRDTLLKG_					0	0	0			REV__ENSG00000165886|ENST00000370664|UBTD1	REV__ENSG00000165886|ENST00000370664|UBTD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.7813415527344	3	434.261371	1299.76228	0.77291	0.00033564	-2.687	-0.0011669	-1.9141	-0.00083121	434.26024791809493	61.702	0.41872	58.244	57.963	58.382	-3.4577					11	8	2	0	0	0	0.025722	1	4234	4234		27.644	8.3812	1	38650	+		46053	21132	38144	38167	49490	49490					0.12439226645847157
QLRVDYVIFDN	11	Unmodified	_QLRVDYVIFDN_					0	0	0		ENSG00000177558|ENST00000324675|FAM187B	ENSG00000177558|ENST00000324675|FAM187B	ENSG00000177558|ENST00000324675|FAM187B	MULTI-SECPEP	OvCa99_classI_Rep5	1	460.2774658203125	3	461.241865	1380.70376	-0.14429	-6.6554E-05	2.6807	0.0012364	2.5364	0.0011699	461.24307440485416	60.446	0.66311	60.446	60.238	60.901	0					36	15	4	0	0	0	0.025819	1	5305	5305		20.315	0	1	861980			46054	7693	38145	38168	49491	49491					0.0286412528071196
QLRVVKSVK	9	Unmodified	_QLRVVKSVK_					0	0	0		ENST00000298281.8_1_11:82893037-82893504:+|nuORF	ENST00000298281.8_1_11:82893037-82893504:+|nuORF	ENST00000298281.8_1_11:82893037-82893504:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	528.8480834960938	2	528.848033	1055.68151	-0.64656	-0.00034193	0.59976	0.00031718	-0.046795	-2.4748E-05	528.8483040643393	39.441	1.0041	39.441	39.196	40.2	0					42	22	4	0	0	0	0.24951	1	2309	2309		68.787	15.435	1	2868100			46055	10153	38146	38169	49492	49492					0.1558999039361879
QLRVVTEP	8	Unmodified	_QLRVVTEP_					0	0	0			REV__ENSG00000123892|ENST00000243662|RAB38	REV__ENSG00000123892|ENST00000243662|RAB38	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.80963134765625	2	471.274367	940.53418	0.46994	0.00022147	-4.1903	-0.0019748	-3.7203	-0.0017533	471.2725566817458	63.562	0.39431	63.562	63.296	63.69	0					14	9	2	0	0	0	0.028476	1	5692	5692		51.335	8.861	1	397990	+		46056	18654	38147	38170	49493	49493					0.0615347378881097
QLRYLLNRA	9	Unmodified	_QLRYLLNRA_					0	0	0			REV__nc|ENSG00000101955|P78539-3|SRPX	REV__nc|ENSG00000101955|P78539-3|SRPX	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.2546997070312	2	573.840739	1145.66693	-0.14546	-8.3469E-05	-0.30211	-0.00017336	-0.44757	-0.00025683	574.3418506911117	62.169	0.38179	62.169	61.953	62.335	0					11	8	2	0	0	0	0.027462	1	5491	5491		38.806	0	1	143340	+		46057	17528	38148	38171	49494	49494					0.09991918245464149
QLSARKLLQ	9	Unmodified	_QLSARKLLQ_					0	0	0		nc|ENSG00000118702|P01286-2|GHRH;ENSG00000118702|ENST00000373614|GHRH	nc|ENSG00000118702|P01286-2|GHRH	nc|ENSG00000118702|P01286-2|GHRH	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.78466796875	2	528.82984	1055.64513	-0.14847	-7.8514E-05	4.334	0.002292	4.1856	0.0022134	529.3341216921303	56.773	0.46593	56.773	56.538	57.004	0					17	10	2	0	0	0	0.027446	1	4752	4752		42.864	8.6917	1	235330			46058	3321	38149	38172	49495	49495					0.11953113496883816
QLSARKLLQ	9	Unmodified	_QLSARKLLQ_					0	0	0		nc|ENSG00000118702|P01286-2|GHRH;ENSG00000118702|ENST00000373614|GHRH	nc|ENSG00000118702|P01286-2|GHRH	nc|ENSG00000118702|P01286-2|GHRH	MULTI-MATCH	OvCa9_classI_Rep2	2		2	528.82984	1055.64513	-0.87636	-0.00046345	-1.0747	-0.00056835	-1.9511	-0.0010318	529.3305970608827	59.595	0.67864	56.815	56.294	56.973	-2.7801	-0.009816	-0.00084662	NaN	47.96	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18637			46059	3321	38149	38172							0.11953113496883816
QLSARKLLQ	9	Unmodified	_QLSARKLLQ_					0	0	0		nc|ENSG00000118702|P01286-2|GHRH;ENSG00000118702|ENST00000373614|GHRH	nc|ENSG00000118702|P01286-2|GHRH	nc|ENSG00000118702|P01286-2|GHRH	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	528.82984	1055.64513	-0.46649	-0.00024669	-1.1823	-0.00062526	-1.6488	-0.00087195	528.8289724858414	60.315	0.8424	56.885	56.553	57.395	-3.43	0.060819	-0.00096044	NaN	47.96	16	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43793			46060	3321	38149	38172							0.11953113496883816
QLSATSKTIP	10	Unmodified	_QLSATSKTIP_					0	0	0			REV__nc|ENSG00000164989|Q6TFL3-3|CCDC171	REV__nc|ENSG00000164989|Q6TFL3-3|CCDC171	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.2892456054688	2	523.298039	1044.58152	-1.5214	-0.00079614	-0.30231	-0.0001582	-1.8237	-0.00095434	523.2973477892741	44.479	0.65928	41.441	41.156	41.816	-3.0385					17	12	2	0	0	0	0.026803	1	2227	2227		32.751	0	1	11864	+		46061	21047	38150	38173	49496	49496					0.06101708269147821
QLSDCVPLGEL	11	Unmodified	_QLSDCVPLGEL_					0	0	0			REV__ENST00000443422.1_1_1:226844394-226844625:-|nuORF	REV__ENST00000443422.1_1_1:226844394-226844625:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	587.2952880859375	2	587.294639	1172.57472	-1.8305	-0.001075	2.6431	0.0015523	0.81269	0.00047729	587.2961004815837	119.51	2.07	118.17	117.83	119.9	-1.3444					114	39	5	0	0	0	0.68399	1	11253	11253		35.152	0.97948	1	737630	+		46062	25869	38151	38174	49497	49497					-0.004659726737372694
QLSDLLKTL	9	Unmodified	_QLSDLLKTL_					0	0	0			REV__AR|p.V867L|1|0.14|ENSG00000169083|chrX:67722976-67722976|G/C|missense_variant	REV__AR|p.V867L|1|0.14|ENSG00000169083|chrX:67722976-67722976|G/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.8154907226562	2	515.810782	1029.60701	-1.0679	-0.00055083	2.1888	0.001129	1.121	0.0005782	516.3142416348362	69.802	0.49147	69.802	69.513	70.005	0					16	11	3	0	0	0	0.027447	1	6628	6628		31.53	4.8369	1	79789	+		46063	15649	38152	38175	49498	49498					0.09339182791586609
QLSESKELL	9	Unmodified	_QLSESKELL_					0	0	0		ENSG00000189127|ENST00000338682|ANKRD34B	ENSG00000189127|ENST00000338682|ANKRD34B	ENSG00000189127|ENST00000338682|ANKRD34B	MULTI-MSMS	OvCa99_classI_Rep5	1	523.8018798828125	2	523.790047	1045.56554	1.6433	0.00086074	0.51292	0.00026866	2.1562	0.0011294	523.7903484661838	78.56	1.1774	78.56	78.134	79.311	0					48	28	3	0	0	0	0.26076	1	7988	7988		67.494	0	1	1184100			46064	8535	38153	38176	49499	49499					0.04458002032242803
QLSGLEGLLR	10	Unmodified	_QLSGLEGLLR_					0	0	0			REV__ENSG00000172478|ENST00000388934|MAB21L4	REV__ENSG00000172478|ENST00000388934|MAB21L4	MULTI-SECPEP	OvCa9_classI_Rep3	3	543.2928466796875	2	543.319306	1084.62406	-0.84519	-0.00045921	-4.1761	-0.002269	-5.0213	-0.0027282	543.8184495923323	82.48	1.0432	80.184	79.988	81.032	-2.2963					25	20	2	0	0	0	0.026624	1	4629	4629		63.534	13.998	1	54244	+		46065	21703	38154	38177	49500	49500					0.08513103397376653
QLSGQQQRL	9	Unmodified	_QLSGQQQRL_					0	0	0		ENST00000578759.1_1_17:60214444-60217453:-|nuORF;ENSG00000099821|ENST00000588649|POLRMT	ENST00000578759.1_1_17:60214444-60217453:-|nuORF	ENST00000578759.1_1_17:60214444-60217453:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	529.2908935546875	2	529.291079	1056.56761	-1.0756	-0.00056928	-0.42886	-0.00022699	-1.5044	-0.00079628	529.2909183896861	36.817	1.5855	36.817	36.575	38.161	0					87	34	5	0	0	0	0.46377	1	1960	1960		45.952	1.8352	1	10692000			46066	13973	38155	38178	49501	49501					0.04158475560689112
QLSGQQQRL	9	Unmodified	_QLSGQQQRL_					0	0	0		ENST00000578759.1_1_17:60214444-60217453:-|nuORF;ENSG00000099821|ENST00000588649|POLRMT	ENST00000578759.1_1_17:60214444-60217453:-|nuORF	ENST00000578759.1_1_17:60214444-60217453:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	529.291079	1056.56761	-0.96304	-0.00050973	0.93801	0.00049648	-0.025029	-1.3248E-05	529.2914534067103	39.477	0.99335	36.551	36.146	37.14	-2.9264	-0.13331	0.0011911	NaN	45.952	24	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17516			46067	13973	38155	38178							0.04158475560689112
QLSHHLKL	8	Unmodified	_QLSHHLKL_					0	0	0			REV__ENSG00000197019|ENST00000357949|SERTAD1	REV__ENSG00000197019|ENST00000357949|SERTAD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.26953125	2	488.290351	974.566149	-0.15544	-7.5899E-05	-1.9631	-0.00095854	-2.1185	-0.0010344	488.2884200136116	73.03	0.34935	73.03	72.764	73.113	0					11	8	2	0	0	0	0.028476	1	7121	7121		97.473	28.988	1	134770	+		46068	22887	38156	38179	49502	49502					0.0778488626260696
QLSHLQLD	8	Unmodified	_QLSHLQLD_					0	0	0			REV__ENST00000312655.8_1_17:57430604-57430868:+|nuORF	REV__ENST00000312655.8_1_17:57430604-57430868:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	476.2841796875	2	477.256174	952.497795	-0.63917	-0.00030505	0.97164	0.00046372	0.33246	0.00015867	477.2565818843536	58.468	1.1524	55.688	54.984	56.137	-2.7801					38	22	2	0	0	0	0.028476	1	4207	4207		21.96	6.3181	1	18149	+		46069	24359	38157	38180	49503	49503					0.019645968920940504
QLSIHETE	8	Unmodified	_QLSIHETE_					0	0	0		ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3	ENSG00000105409|ENST00000648268|ATP1A3	ENSG00000105409|ENST00000648268|ATP1A3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.30596923828125	2	478.737814	955.461075	-0.50415	-0.00024136	2.3336	0.0011172	1.8295	0.00087585	478.7377325604231	40.548	0.57767	37.594	37.263	37.841	-2.9541					16	10	2	0	0	0	0.028476	1	1771	1771		47.916	5.4411	1	9966.4			46070	2455	38158	38181	49504	49504					-0.018436997244634767
QLSKENPQL	9	Unmodified	_QLSKENPQL_					0	0	0		nc|ENSG00000178202|Q7Z4H8-3|POGLUT3;nc|ENSG00000178202|Q7Z4H8-2|POGLUT3;ENSG00000178202|ENST00000323468|POGLUT3	nc|ENSG00000178202|Q7Z4H8-3|POGLUT3	nc|ENSG00000178202|Q7Z4H8-3|POGLUT3	MULTI-MSMS	OvCa99_classI_Rep5	1	528.7886962890625	2	528.787838	1055.56112	-0.20402	-0.00010789	0.23861	0.00012617	0.034588	1.829E-05	528.7878061663115	56.601	1.0957	56.601	56.3	57.396	0					66	25	4	0	0	0	0.1944	1	4696	4696		77.318	7.69	1	9284300			46071	7739	38159	38182	49505	49505					0.035565376093245504
QLSKIINLR	9	Unmodified	_QLSKIINLR_					0	0	0			REV__PKDREJ|p.H1181Q|1|0.06|ENSG00000130943|chr22:46259780-46259780|G/C|missense_variant	REV__PKDREJ|p.H1181Q|1|0.06|ENSG00000130943|chr22:46259780-46259780|G/C|missense_variant	MSMS	OvCa99_classI_Rep5	1	542.8449096679688	2	542.84549	1083.67643	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.981	1	38.981	38.481	39.481	0								0	0	0	0.16872	1	2257	2257		54.776	0	1		+		46072	29298	38160	38183	49506	49506					0.13793686530971172
QLSLHPALL	9	Unmodified	_QLSLHPALL_					0	0	0		ENST00000492936.5_1_1:1240737-1240992:-|nuORF	ENST00000492936.5_1_1:1240737-1240992:-|nuORF	ENST00000492936.5_1_1:1240737-1240992:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.29962158203125	2	496.300384	990.586216	-0.20996	-0.0001042	-0.013117	-6.5099E-06	-0.22308	-0.00011071	496.30023015612176	123.47	1.2954	122.1	121.8	123.1	-1.3666					64	25	3	0	0	0	0.51865	1	11674	11674		40.778	1.972	1	220800			46073	12731	38161	38184	49507	49507					0.0905463720255284
QLSLIYTL	8	Unmodified	_QLSLIYTL_					0	0	0		ENST00000366930.8_1_1:218519904-218520003:+|nuORF	ENST00000366930.8_1_1:218519904-218520003:+|nuORF	ENST00000366930.8_1_1:218519904-218520003:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	476.2308044433594	2	475.781493	949.548434	-0.043267	-2.0586E-05	-2.9312	-0.0013946	-2.9745	-0.0014152	475.78002760525794	43.195	0.33898	43.195	43.014	43.353	0					13	7	2	0	0	0	0.028476	1	2815	2815		16.473	0	1	127850			46074	10830	38162	38185	49508	49508					0.07164126217082867
QLSLNINKL	9	Unmodified	_QLSLNINKL_					0	0	0		nc|ENSG00000137948|Q58F21-5|BRDT;nc|ENSG00000137948|Q58F21-4|BRDT;ENSG00000137948|ENST00000399546|BRDT;nc|ENSG00000137948|Q58F21-3|BRDT;nc|ENSG00000137948|Q58F21-2|BRDT	nc|ENSG00000137948|Q58F21-5|BRDT	nc|ENSG00000137948|Q58F21-5|BRDT	MULTI-MSMS	OvCa9_classI_Rep2	2	521.81591796875	2	521.816399	1041.61824	0.14205	7.4125E-05	3.3835	0.0017656	3.5256	0.0018397	521.8180437504082	114.7	1.5298	114.59	114.11	115.64	-0.11777					70	30	3	0	0	0	0.38969	1	10944	10944		52.937	1.6012	1	278860			46075	4638	38163	38186	49509	49509					0.09910004885705348
QLSLTLMEP	9	Unmodified	_QLSLTLMEP_					0	0	0			REV__ENST00000343380.5_1_20:32264369-32264531:-|nuORF	REV__ENST00000343380.5_1_20:32264369-32264531:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.2434692382812	2	516.275718	1030.53688	-0.50386	-0.00026013	4.0647	0.0020985	3.5608	0.0018384	516.2779858439319	52.107	0.65711	48.899	48.59	49.247	-3.208					30	12	3	0	0	0	0.027462	1	3137	3137		26.693	1.2427	1	85039	+		46076	24670	38164	38187	49510	49510					0.022835611314576454
QLSPGLPQQP	10	Unmodified	_QLSPGLPQQP_					0	0	0			REV__ENSG00000143603|ENST00000271915|KCNN3	REV__ENSG00000143603|ENST00000271915|KCNN3	MULTI-SECPEP	OvCa9_classI_Rep3	3	533.2722778320312	2	532.790381	1063.56621	0.081464	4.3403E-05	-0.59786	-0.00031853	-0.51639	-0.00027513	532.7904452263116	88.756	0.82507	86.625	86.364	87.189	-2.1309					36	16	3	0	0	0	0.026931	1	5450	5450		30.318	7.2752	1	52802	+		46077	19855	38165	38188	49511	49511					0.036968414719467546
QLSPQPGRR	9	Unmodified	_QLSPQPGRR_					0	0	0			REV__ENST00000592414.1_1_19:3053561-3053795:-|nuORF	REV__ENST00000592414.1_1_19:3053561-3053795:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	519.793212890625	2	519.793789	1037.57303	-0.83173	-0.00043233	0.90792	0.00047193	0.076187	3.9601E-05	519.7941003158112	120.39	3.5079	120.22	119.69	123.2	-0.17137					148	70	4	0	0	0	0.37135	1	11637	11637		54.776	3.4409	1	553870	+		46078	27950	38166	38189	49512	49512					0.0557419914316597
QLSPRLLEV	9	Unmodified	_QLSPRLLEV_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	OvCa99_classI_Rep5	1	527.8177490234375	2	527.816399	1053.61824	2.4618	0.0012994	-0.56644	-0.00029898	1.8953	0.0010004	527.8159774537054	100.73	1.125	100.73	100.15	101.27	0					58	26	3	0	0	0	0.22621	1	11166	11166		71.877	0	1	2903000			46079	7356	38167	38190	49513	49513					0.09358004885712035
QLSQALNVL	9	Unmodified	_QLSQALNVL_					0	0	0		TRIM9|p.G283V|1|0.01|ENSG00000100505|chr14:51025335-51025335|C/A|missense_variant	TRIM9|p.G283V|1|0.01|ENSG00000100505|chr14:51025335-51025335|C/A|missense_variant	TRIM9|p.G283V|1|0.01|ENSG00000100505|chr14:51025335-51025335|C/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.9366455078125	2	493.287474	984.560395	-0.81864	-0.00040383	-1.1429	-0.00056375	-1.9615	-0.00096758	493.28599807246485	40.066	0.22298	40.066	39.883	40.106	0					5	4	2	0	0	0	0.027462	1	2382	2382		9.7057	0	1	13892			46080	36279	38168	38191	49514	49514					0.06749742960278127
QLSQALRKP	9	Unmodified	_QLSQALRKP_					0	0	0		ENSG00000250423|ENST00000691062|KIAA1210;nc|ENSG00000250423|Q9ULL0|KIAA1210	ENSG00000250423|ENST00000691062|KIAA1210	ENSG00000250423|ENST00000691062|KIAA1210	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.770751953125	2	520.81419	1039.61383	-1.1973	-0.00062355	1.2275	0.0006393	0.030245	1.5752E-05	520.814708541224	66.269	0.71745	66.269	66.022	66.739	0					27	17	2	0	0	0	0.027462	1	6203	6203		23.042	0	1	2604000			46081	9419	38169	38192	49515	49515					0.09560540462780409
QLSQQRIH	8	Unmodified	_QLSQQRIH_					0	0	0		ENST00000497446.5_1_7:107332392-107334073:+|nuORF	ENST00000497446.5_1_7:107332392-107334073:+|nuORF	ENST00000497446.5_1_7:107332392-107334073:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.798583984375	2	505.280515	1008.54648	-0.42053	-0.00021248	0.34972	0.00017671	-0.070811	-3.5779E-05	505.2804564488414	35.916	0.45801	35.916	35.753	36.211	0					17	9	2	0	0	0	0.028476	1	1866	1866		40.573	2.7611	1	952140			46082	12806	38170	38193	49516	49516					0.04254510251837473
QLSREYFI	8	Unmodified	_QLSREYFI_					0	0	0			REV__tr|A0A7D6VNJ7|A0A7D6VNJ7_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18160PE=3SV=1	REV__tr|A0A7D6VNJ7|A0A7D6VNJ7_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18160PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.8182983398438	2	528.279649	1054.54475	2.492	0.0013165	-0.84884	-0.00044843	1.6432	0.00086807	528.2790793915983	100.69	0.57632	100.69	100.44	101.02	0					22	13	2	0	0	0	0.028476	1	11194	11194		53.351	9.2347	1	584670	+		46083	31186	38171	38194	49517	49517					0.0196545644323578
QLSRGKPM	8	Unmodified	_QLSRGKPM_					0	0	0		ENST00000370035.7_1_1:109177820-109178099:+|nuORF	ENST00000370035.7_1_1:109177820-109178099:+|nuORF	ENST00000370035.7_1_1:109177820-109178099:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	459.2464599609375	2	458.755287	915.496021	-0.60763	-0.00027876	1.8492	0.00084831	1.2415	0.00056956	458.7581214674804	61.198	0.47175	58.438	58.201	58.672	-2.7593					9	8	2	0	0	0	0.028476	1	4543	4543		25.45	7.1258	1	6216.7			46084	10916	38172	38195	49518	49518					0.03489264602490039
QLSRQYPR	8	Unmodified	_QLSRQYPR_					0	0	0		ENST00000374057.3_1_9:117267080-117267632:-|nuORF	ENST00000374057.3_1_9:117267080-117267632:-|nuORF	ENST00000374057.3_1_9:117267080-117267632:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	524.288818359375	2	524.28834	1046.56213	0.32988	0.00017295	-0.66432	-0.0003483	-0.33444	-0.00017534	524.2878628443616	44.341	1.6949	41.631	41.303	42.998	-2.7097					85	33	4	0	0	0	0.74229	1	2513	2513		30.504	0	1	482610			46085	11024	38173	38196	49519	49519					0.04070796768883156
QLSRRQIR	8	Unmodified	_QLSRRQIR_					0	0	0		nc|ENSG00000158815|O60258-2|FGF17;ENSG00000158815|ENST00000359441|FGF17	nc|ENSG00000158815|O60258-2|FGF17	nc|ENSG00000158815|O60258-2|FGF17	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7528686523438	2	528.822881	1055.63121	1.8766	0.00099239	3.7689	0.0019931	5.6455	0.0029855	528.8244585988634	98.717	0.70428	98.717	98.332	99.036	0					24	16	2	0	0	0	0.028476	1	10847	10847		47.916	18.746	1	675030			46086	5974	38174	38197	49520	49520					0.10561880788463895
QLSTDLVSL	9	Unmodified	_QLSTDLVSL_					0	0	0			REV__ENSG00000251322|ENST00000262795|SHANK3	REV__ENSG00000251322|ENST00000262795|SHANK3	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.2861022949219	2	488.27149	974.528426	2.0195	0.00098605	0.67933	0.0003317	2.6988	0.0013178	488.27269801428747	85.864	0.40074	85.864	85.791	86.192	0					12	9	2	0	0	0	0.027403	1	9022	9022		60.118	14.146	1	291430	+		46087	23498	38175	38198	49521	49521					0.040143304864727725
QLSTDLVSL	9	Unmodified	_QLSTDLVSL_					0	0	0			REV__ENSG00000251322|ENST00000262795|SHANK3	REV__ENSG00000251322|ENST00000262795|SHANK3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	488.27149	974.528426	-2.1291	-0.0010396	2.2743	0.0011105	0.14524	7.0916E-05	488.27265264103715	88.346	0.65828	85.743	85.578	86.237	-2.6027	-0.060103	0.00030809	NaN	60.118	14	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31558	+		46088	23498	38175	38198							0.040143304864727725
QLSVKTLHTKL	11	Unmodified	_QLSVKTLHTKL_					0	0	0			REV__HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|41|1|sense	REV__HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|41|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	422.92010498046875	3	423.2626	1266.76597	-0.35988	-0.00015232	-0.13011	-5.507E-05	-0.48999	-0.00020739	423.2622755537173	76.507	1.3365	73.568	73.27	74.607	-2.9389					52	27	3	0	0	0	0.025338	1	6111	6111		33.039	0	1	145240	+		46089	28244	38176	38199	49522	49522					0.1432589641967752
QLSVSDRSSIR	11	Unmodified	_QLSVSDRSSIR_					0	0	0		ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.92236328125	3	416.561597	1246.66296	0.20524	8.5495E-05	3.8443	0.0016014	4.0495	0.0016869	416.5632085773532	40.53	0.27976	40.53	40.386	40.666	0					8	5	2	0	0	0	0.025988	1	2479	2479		20.315	9.7282	1	55168			46090	6177	38177	38200	49523	49523					0.0494978396109218
QLSVSDRSSIR	11	Unmodified	_QLSVSDRSSIR_					0	0	0		ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-MATCH	OvCa9_classI_Rep2	2		3	416.561597	1246.66296	1.1883	0.00049502	10.038	0.0041815	11.227	0.0046766	416.56565584454796	43.235	1.1873	40.526	39.966	41.153	-2.7097	0.041659	0.0015079	NaN	20.315	50	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53685			46091	6177	38177	38200							0.0494978396109218
QLSVSDRSSIR	11	Unmodified	_QLSVSDRSSIR_					0	0	0		ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	ENSG00000162402|ENST00000294383|USP24	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	416.561597	1246.66296	-1.1083	-0.00046169	12.714	0.0052961	11.605	0.0048344	416.5670420947836	43.404	1.195	40.396	39.696	40.891	-3.0074	-0.087634	0.0048515	NaN	20.315	39	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57421			46092	6177	38177	38200							0.0494978396109218
QLSYSKIR	8	Unmodified	_QLSYSKIR_					0	0	0			REV__ENSG00000142065|ENST00000270001|ZFP14	REV__ENSG00000142065|ENST00000270001|ZFP14	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.2445983886719	2	497.787641	993.56073	-0.89402	-0.00044503	0.39274	0.0001955	-0.50129	-0.00024953	497.7877081437357	50.262	0.69903	50.262	50.031	50.73	0					29	15	3	0	0	0	0.028476	1	3836	3836		50.025	2.1089	1	531370	+		46093	19765	38178	38201	49524	49524					0.06369162680141471
QLSYTLHTP	9	Unmodified	_QLSYTLHTP_					0	0	0			REV__chr11:13967161-13982847|147|36.29|0.1|8.43|+|2|TE_info:MIRb,MIRb_dup141092,MIR,SINE,donor,-,13966994,13967161|None,SPON1|2	REV__chr11:13967161-13982847|147|36.29|0.1|8.43|+|2|TE_info:MIRb,MIRb_dup141092,MIR,SINE,donor,-,13966994,13967161|None,SPON1|2	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2933349609375	2	530.277106	1058.53966	0.24458	0.0001297	-3.9009	-0.0020686	-3.6563	-0.0019389	530.2749534237391	46.19	0.43455	46.19	45.934	46.369	0					14	9	2	0	0	0	0.027462	1	3229	3229		21.96	4.4919	1	193450	+		46094	15857	38179	38202	49525	49525					0.012731525806202626
QLTENKMDPK	10	Unmodified	_QLTENKMDPK_					0	0	0			REV__L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|78|3|sense	REV__L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|78|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	603.2897338867188	2	602.305538	1202.59652	1.6181	0.00097462	1.9056	0.0011477	3.5237	0.0021224	602.3067124022833	90.767	0.82839	90.767	90.504	91.332	0					47	20	4	0	0	0	0.026666	1	9805	9805		24.519	0	1	1022400	+		46095	28356	38180	38203	49526	49526					0.003328320748096303
QLTKKKKKK	9	Unmodified	_QLTKKKKKK_					0	0	0			REV__ENST00000426826.2_1_1:150026325-150026897:+|nuORF	REV__ENST00000426826.2_1_1:150026325-150026897:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.3944702148438	2	565.392608	1128.77066	1.794	0.0010143	1.5357	0.00086829	3.3297	0.0018826	565.3932909276965	34.314	1.2515	31.526	31.2	32.451	-2.7881					66	24	4	0	0	0	0.62352	1	1013	1013		29.15	1.2673	1	178170	+		46096	25671	38181	38204	49527	49527					0.21142825353126682
QLTKLIQK	8	Unmodified	_QLTKLIQK_					0	0	0			REV__tr|A0A7D6VTR0|A0A7D6VTR0_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17865PE=3SV=1	REV__tr|A0A7D6VTR0|A0A7D6VTR0_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17865PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	486.3155212402344	2	486.316035	970.617516	-1.0603	-0.00051562	0.87069	0.00042343	-0.18957	-9.2189E-05	486.31628594803936	50.625	1.6844	47.831	47.43	49.115	-2.794					77	33	4	0	0	0	0.50747	1	3300	3300		76.774	2.5191	1	433010	+		46097	31624	38182	38205	49528	49528					0.13103210236670293
QLTKMEFELL	10	Unmodified	_QLTKMEFELL_					0	0	0		tr|A0A7D6VUJ4|A0A7D6VUJ4_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_01850PE=4SV=1	tr|A0A7D6VUJ4|A0A7D6VUJ4_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_01850PE=4SV=1	tr|A0A7D6VUJ4|A0A7D6VUJ4_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_01850PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	626.3397827148438	2	626.336307	1250.65806	2.0915	0.00131	1.2853	0.00080505	3.3769	0.002115	626.337004210225	123.71	1.9187	122.67	121.68	123.6	-1.0377					71	36	4	0	0	0	0.65849	1	9557	9557		35.152	3.5178	1	298190			46098	35189	38183	38206	49529	49529					0.04275763774126062
QLTLQHLN	8	Unmodified	_QLTLQHLN_					0	0	0			REV__FCN3|p.D185Vfs*3|1|0.16|ENSG00000142748|chr1:27370700-27370701|-/A|frameshift_variant	REV__FCN3|p.D185Vfs*3|1|0.16|ENSG00000142748|chr1:27370700-27370701|-/A|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.2938537597656	2	483.771991	965.529429	-1.4042	-0.00067931	0.99578	0.00048173	-0.40841	-0.00019758	483.7724314254025	95.555	0.50282	93.087	92.912	93.414	-2.4685					14	9	2	0	0	0	0.028476	1	8424	8424		37.159	0	1	31739	+		46099	19806	38184	38207	49530	49530					0.045285896460427466
QLTLQHWL	8	Unmodified	_QLTLQHWL_					0	0	0			REV__PSMD13|p.L315Pfs*59|1|0.26|ENSG00000185627|chr11:251842-251843|-/T|frameshift_variant	REV__PSMD13|p.L315Pfs*59|1|0.26|ENSG00000185627|chr11:251842-251843|-/T|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.8331298828125	2	519.790184	1037.56581	1.4084	0.00073208	3.9218	0.0020385	5.3303	0.0027706	519.7919585323938	87.633	0.70897	87.633	87.378	88.087	0					23	16	2	0	0	0	0.028476	1	9296	9296		71.296	20.103	1	723110	+		46100	22516	38185	38208	49531	49531					0.04853466542749629
QLTLWYQHPI	10	Unmodified	_QLTLWYQHPI_					0	0	0			REV__ENSG00000145675|ENST00000521381|PIK3R1	REV__ENSG00000145675|ENST00000521381|PIK3R1	MULTI-SECPEP	OvCa99_classI_Rep5	1	434.2756652832031	3	433.567912	1297.68191	2.4127	0.001046	-0.2194	-9.5125E-05	2.1932	0.00095092	433.56777291242446	87.651	0.62457	87.651	87.378	88.003	0					35	14	3	0	0	0	0.027193	1	9313	9313		11.636	0	1	1359700	+		46101	19974	38186	38209	49532	49532					0.04497365322777114
QLTMADNGTY	10	Unmodified	_QLTMADNGTY_					0	0	0		ENSG00000143167|ENST00000367868|GPA33	ENSG00000143167|ENST00000367868|GPA33	ENSG00000143167|ENST00000367868|GPA33	MULTI-SECPEP	OvCa9_classI_Rep2	2	557.3292236328125	2	557.247689	1112.48082	0.95368	0.00053143	4.1722	0.002325	5.1259	0.0028564	557.2497389249239	80.989	0.34932	79.34	79.215	79.564	-1.6485					9	6	2	0	0	0	0.026906	1	6877	6877		33.922	0	1	15111			46102	5016	38187	38210	49533	49533					-0.07091691776008702
QLTRHQKI	8	Unmodified	_QLTRHQKI_					0	0	0		nc|ENSG00000171817|Q8NDQ6-2|ZNF540;nc|ENSG00000171817|Q8NDQ6-4|ZNF540;ENST00000589285.1_1_19:38102250-38104161:+|nuORF;ENSG00000171817|ENST00000316433|ZNF540;ENSG00000186020|ENST00000591340|ZNF529	nc|ENSG00000171817|Q8NDQ6-2|ZNF540;ENSG00000186020|ENST00000591340|ZNF529	nc|ENSG00000171817|Q8NDQ6-2|ZNF540	MULTI-MSMS	OvCa99_classI_Rep5	1	512.3064575195312	2	512.306532	1022.59851	-0.13428	-6.8791E-05	-0.37898	-0.00019416	-0.51326	-0.00026295	512.3062022686638	30.412	0.49503	30.412	30.236	30.731	0					26	9	4	0	0	0	0.40148	1	1165	1165		87.754	2.3948	1	351070			46103	7236;8309	38188	38211	49534	49534					0.08811673665604758
QLTRLVLR	8	Unmodified	_QLTRLVLR_					0	0	0		ENST00000204679.8_1_16:1413113-1413224:+|nuORF	ENST00000204679.8_1_16:1413113-1413224:+|nuORF	ENST00000204679.8_1_16:1413113-1413224:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.809814453125	2	499.827101	997.639649	-0.12129	-6.0623E-05	-3.135	-0.0015669	-3.2563	-0.0016276	499.8251983491791	62.243	0.67579	62.243	61.743	62.418	0					21	15	2	0	0	0	0.028476	1	5543	5543		25.45	0	1	204100			46104	9652	38189	38212	49535	49535					0.1407343470508522
QLTVALEKVI	10	Unmodified	_QLTVALEKVI_					0	0	0			REV__ENSG00000165923|ENST00000525123|AGBL2	REV__ENSG00000165923|ENST00000525123|AGBL2	MULTI-SECPEP	OvCa9_classI_Rep2	2	557.3292236328125	2	557.347532	1112.68051	0.94479	0.00052658	-2.3478	-0.0013085	-1.403	-0.00078197	557.3461756496125	80.919	0.45084	79.253	79.045	79.496	-1.6666					9	8	2	0	0	0	0.026843	1	6877	6877		46.457	18.375	1	10893	+		46105	21139	38190	38213	49536	49536					0.1286773123401872
QLTYKERF	8	Unmodified	_QLTYKERF_					0	0	0			REV__ENSG00000126070|ENST00000373191|AGO3	REV__ENSG00000126070|ENST00000373191|AGO3	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.7921142578125	2	542.792924	1083.57129	3.1233	0.0016953	-3.4046	-0.001848	-0.28127	-0.00015267	542.7910789695811	131.31	0.85539	129.83	129.55	130.4	-1.4779					32	17	3	0	0	0	0.66992	1	12623	12623		49.442	5.3247	1	71468	+		46106	18770	38191	38214	49537	49537					0.032851453345756454
QLVARLVS	8	Unmodified	_QLVARLVS_					0	0	0		nc|ENSG00000133640|Q96JM4-2|LRRIQ1;ENSG00000133640|ENST00000393217|LRRIQ1;ENST00000528777.3_1_12:85556565-85656835:+|nuORF	nc|ENSG00000133640|Q96JM4-2|LRRIQ1	nc|ENSG00000133640|Q96JM4-2|LRRIQ1	MULTI-MSMS	OvCa99_classI_Rep5	1	443.2806091308594	2	443.279452	884.544351	3.0989	0.0013737	-0.71429	-0.00031663	2.3846	0.001057	443.2790572668541	76.464	0.72295	76.464	76.238	76.961	0					42	17	3	0	0	0	0.62474	1	7688	7688		58.782	7.4465	1	3977200			46107	4229	38192	38215	49538	49538					0.09746081514026628
QLVDEFLKI	9	Unmodified	_QLVDEFLKI_					0	0	0		tr|A0A7D7A152|A0A7D7A152_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06195PE=3SV=1	tr|A0A7D7A152|A0A7D7A152_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06195PE=3SV=1	tr|A0A7D7A152|A0A7D7A152_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06195PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	552.820556640625	2	552.818607	1103.62266	1.4102	0.00077957	0.43262	0.00023916	1.8428	0.0010187	552.8186347361908	130.55	0.52728	130.55	130.34	130.87	0					24	10	4	0	0	0	0.3076	1	15151	15151		62.107	1.9892	1	286060			46108	36025	38193	38216	49539	49539					0.07499469308595508
QLVDIIEKV	9	Unmodified	_QLVDIIEKV_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-MSMS	OvCa99_classI_Rep5	1	528.8206176757812	2	528.818607	1055.62266	0.39786	0.0002104	1.624	0.00085883	2.0219	0.0010692	528.8194130608392	114.26	1.805	114.26	113.97	115.77	0					83	38	4	0	0	0	0.0084406	3	13046	13023;13046;13070		177.3	51.38	1	6649300			46109	4067	38194	38217	49540;49541;49542	49541					0.09707469308591499
QLVDIIEKV	9	Unmodified	_QLVDIIEKV_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-MSMS	OvCa9_classI_Rep2	2	528.81787109375	2	528.818607	1055.62266	-0.68114	-0.0003602	0.3658	0.00019344	-0.31535	-0.00016676	528.8186963276652	114.63	2.1243	114.52	114.11	116.23	-0.11777					92	42	4	0	0	0	0.0070026	11	10911	10896;10899;10905;10911;10917;10923;10929;10935;10942;10951;10956		185.72	50.595	1	670260			46110	4067	38194	38217	49543;49544;49545;49546;49547;49548;49549;49550;49551;49552;49553	49546					0.09707469308591499
QLVDIIEKV	9	Unmodified	_QLVDIIEKV_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-MSMS	OvCa9_classI_Rep3	3	528.8167724609375	2	528.818607	1055.62266	-0.60363	-0.00031921	-0.40243	-0.00021281	-1.0061	-0.00053202	528.8183619867048	115.41	2.6689	114.37	113.91	116.58	-1.0414					129	51	6	0	0	0	0.0093048	7	8566	8561;8566;8572;8578;8584;8598;8605		172.25	52.518	1	629220			46111	4067	38194	38217	49554;49555;49556;49557;49558;49559;49560	49555					0.09707469308591499
QLVDIIEKV	9	Unmodified	_QLVDIIEKV_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3;ENST00000593111.1_1_17:40986588-40991030:+|nuORF	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.8184204101562	2	528.818607	1055.62266	-0.58431	-0.00030899	-0.14688	-7.7671E-05	-0.73119	-0.00038667	528.8184384605206	115.69	2.5492	114.29	113.92	116.47	-1.3977					103	49	4	0	0	0	0.014622	6	10784	10763;10772;10784;10796;10808;10821		154.12	43.998	1	813440			46112	4067	38194	38217	49561;49562;49563;49564;49565;49566	49563					0.09707469308591499
QLVDLKLTV	9	Unmodified	_QLVDLKLTV_					0	0	0		ENSG00000084764|ENST00000233121|MAPRE3;nc|ENSG00000084764|Q9UPY8-2|MAPRE3	ENSG00000084764|ENST00000233121|MAPRE3	ENSG00000084764|ENST00000233121|MAPRE3	MULTI-MSMS	OvCa99_classI_Rep5	1	514.8223266601562	2	514.82115	1027.62775	1.8779	0.00096676	-0.30106	-0.00015499	1.5768	0.00081177	514.8208544197644	115.5	0.88688	115.5	115.07	115.96	0					36	18	3	0	0	0	0.021573	1	13196	13196		145.16	26.413	1	1138700			46113	1721	38195	38218	49567	49567					0.11503773171193643
QLVDLKLTV	9	Unmodified	_QLVDLKLTV_					0	0	0		ENSG00000084764|ENST00000233121|MAPRE3;nc|ENSG00000084764|Q9UPY8-2|MAPRE3	ENSG00000084764|ENST00000233121|MAPRE3	ENSG00000084764|ENST00000233121|MAPRE3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.82115	1027.62775	-0.48382	-0.00024908	-0.10117	-5.2085E-05	-0.58499	-0.00030117	514.8210387200686	115.51	1.632	115.4	115.05	116.68	-0.11777	-0.019771	0.00014291	NaN	145.16	88	32	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	659010			46114	1721	38195	38218							0.11503773171193643
QLVEAVGKNN	10	Unmodified	_QLVEAVGKNN_					0	0	0			REV__nc|ENSG00000129353|Q8IWA5-3|SLC44A2	REV__nc|ENSG00000129353|Q8IWA5-3|SLC44A2	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3294067382812	2	536.293288	1070.57202	-0.928	-0.00049768	2.524	0.0013536	1.596	0.00085593	536.7949659258354	34.328	0.57137	34.328	33.873	34.444	0					14	11	2	0	0	0	0.027575	1	1631	1631		80.455	11.668	1	46675	+		46115	18895	38196	38219	49568	49568					0.039559399836207376
QLVGLVPLKAL	11	Unmodified	_QLVGLVPLKAL_					0	0	0		nc|ENSG00000160282|O95954-3|FTCD;ENSG00000160282|ENST00000397746|FTCD;nc|ENSG00000160282|O95954-2|FTCD	nc|ENSG00000160282|O95954-3|FTCD	nc|ENSG00000160282|O95954-3|FTCD	MULTI-MSMS	OvCa9_classI_Rep3	3	575.88037109375	2	575.881542	1149.74853	-0.33635	-0.0001937	0.13878	7.9921E-05	-0.19757	-0.00011378	575.8816146863785	130.37	1.3721	129.25	128.83	130.21	-1.1121					69	27	4	0	0	0	0.69808	1	10355	10355		30.318	1.1477	1	151570			46116	6051	38197	38220	49569	49569					0.17964600884693027
QLVGRILP	8	Unmodified	_QLVGRILP_					0	0	0		ENST00000566995.5_1_16:84531639-84537596:-|nuORF	ENST00000566995.5_1_16:84531639-84537596:-|nuORF	ENST00000566995.5_1_16:84531639-84537596:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	449.26861572265625	2	448.28982	894.565087	0.88945	0.00039873	-1.1822	-0.00052997	-0.29276	-0.00013124	448.28913353645953	113.5	1.4494	112.06	111.75	113.2	-1.4461					43	28	3	0	0	0	0.028476	1	10574	10574		38.806	6.8513	1	83253			46117	13855	38198	38221	49570	49570					0.1135867189370856
QLVGVVGVIIE	11	Unmodified	_QLVGVVGVIIE_					0	0	0			REV__tr|A0A7D6ZVJ6|A0A7D6ZVJ6_9CLOTPeptidechainreleasefactor3OS=ClostridiumintestinaleOX=36845GN=prfCPE=3SV=1	REV__tr|A0A7D6ZVJ6|A0A7D6ZVJ6_9CLOTPeptidechainreleasefactor3OS=ClostridiumintestinaleOX=36845GN=prfCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.3494262695312	2	563.347532	1124.68051	1.893	0.0010664	-1.0637	-0.00059923	0.82929	0.00046718	563.3468115501491	89.862	1.6698	87.287	86.851	88.52	-2.575					88	32	3	0	0	0	0.52842	1	7743	7743		51.193	6.8155	1	492310	+		46118	32254	38199	38222	49571	49571					0.12315731234048144
QLVHDVLET	9	Unmodified	_QLVHDVLET_					0	0	0			REV__BUB1B-EIF2AK4|1|fusion	REV__BUB1B-EIF2AK4|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	527.2835693359375	2	527.282389	1052.55022	-0.60687	-0.00031999	-0.5352	-0.0002822	-1.1421	-0.00060219	527.2822314364422	51.642	3.3838	51.642	51.248	54.632	0					222	79	6	0	0	0	0.56889	1	4091	4091		35.618	0.41757	1	134030000	+		46119	15716	38200	38223	49572	49572					0.026051352350577872
QLVKIQKLV	9	Unmodified	_QLVKIQKLV_					0	0	0		ENST00000567273.1_1_X:37798839-37798923:+|nuORF	ENST00000567273.1_1_X:37798839-37798923:+|nuORF	ENST00000567273.1_1_X:37798839-37798923:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.2610473632812	2	534.860609	1067.70667	1.9663	0.0010517	0.36055	0.00019285	2.3269	0.0012446	534.8606442884669	107.34	0.71342	107.34	107.06	107.77	0					41	16	4	0	0	0	0.027462	1	12108	12108		23.042	0	1	2435600			46120	13860	38201	38224	49573	49573					0.1755204519615745
QLVLERVR	8	Unmodified	_QLVLERVR_					0	0	0		nc|ENSG00000204960|A4D250|BLACE	nc|ENSG00000204960|A4D250|BLACE	nc|ENSG00000204960|A4D250|BLACE	MULTI-MSMS	OvCa99_classI_Rep5	1	506.8175964355469	2	506.816733	1011.61891	-0.31962	-0.00016199	-0.20402	-0.0001034	-0.52364	-0.00026539	506.8164800841762	53.108	0.86067	53.108	52.873	53.733	0					41	19	3	0	0	0	0.62934	1	4199	4199		57.811	0	1	2383100			46121	15274	38202	38225	49574	49574					0.1135684432541666
QLVLIVNEN	9	Unmodified	_QLVLIVNEN_					0	0	0		SALL1|p.I1085Tfs*17|1|0.14|ENSG00000103449|chr16:51138968-51138969|-/G|frameshift_variant;ENSG00000103449|ENST00000251020|SALL1	SALL1|p.I1085Tfs*17|1|0.14|ENSG00000103449|chr16:51138968-51138969|-/G|frameshift_variant	SALL1|p.I1085Tfs*17|1|0.14|ENSG00000103449|chr16:51138968-51138969|-/G|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	521.2994384765625	2	521.300581	1040.58661	1.1502	0.00059958	2.3538	0.0012271	3.504	0.0018266	521.3018212895131	129.74	0.75006	129.74	129.54	130.29	0					25	15	2	0	0	0	0.46356	1	15049	15049		45.972	1.5951	1	152620			46122	2317	38203	38226	49575	49575					0.06794012131740601
QLVLKRRG	8	Unmodified	_QLVLKRRG_					0	0	0		ENSG00000062582|ENST00000317534|MRPS24	ENSG00000062582|ENST00000317534|MRPS24	ENSG00000062582|ENST00000317534|MRPS24	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.79461669921875	2	485.319443	968.624333	-0.4703	-0.00022825	-2.1274	-0.0010325	-2.5977	-0.0012607	485.31929901313237	48.347	1.2231	48.347	47.941	49.164	0					66	27	3	0	0	0	0.028476	1	3640	3640		25.45	7.1258	1	1378400			46123	1276	38204	38227	49576	49576					0.13876567907891513
QLVLLHLSKR	10	Unmodified	_QLVLLHLSKR_					0	0	0			REV__ENST00000482932.5_1_1:156377658-156383882:-|nuORF	REV__ENST00000482932.5_1_1:156377658-156383882:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	603.8892822265625	2	603.88769	1205.76083	2.7018	0.0016316	-1.0378	-0.00062672	1.664	0.0010048	603.8873042583225	89.105	0.96055	89.105	88.803	89.763	0					71	23	4	0	0	0	0.75313	1	9547	9547		24.519	0.99649	1	3757800	+		46124	26514	38205	38228	49577	49577					0.1661763734773558
QLVQDFEPK	9	Unmodified	_QLVQDFEPK_					0	0	0			REV__nc|ENSG00000182473|Q9UPT5-2|EXOC7	REV__nc|ENSG00000182473|Q9UPT5-2|EXOC7	MULTI-SECPEP	OvCa9_classI_Rep2	2	551.8470458984375	2	552.290214	1102.56587	-0.35319	-0.00019507	3.3924	0.0018736	3.0392	0.0016785	552.292653763099	100.81	0.34703	100.05	99.973	100.32	-0.76401					9	6	2	0	0	0	0.027462	1	9258	9258		42.864	0	1	23319	+		46125	22296	38206	38229	49578	49578					0.018694217520987877
QLVQQQQVL	9	Unmodified	_QLVQQQQVL_					0	0	0		EP400|p.D2035Afs*2|1|0.12|ENSG00000183495|chr12:132037992-132037993|-/C|frameshift_variant;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400;nc|ENSG00000183495|Q96L91-4|EP400;EP400|p.P1343Qfs*17|1|0.1|ENSG00000183495|chr12:132017637-132017637|C/-|frameshift_variant;EP400|p.L1422Tfs*90|1|0.12|ENSG00000183495|chr12:132018362-132018363|-/A|frameshift_variant;nc|ENSG00000185684|Q6ZTU2-5|EP400P1;nc|ENSG00000185684|Q6ZTU2-2|EP400P1;nc|ENSG00000185684|Q6ZTU2|EP400P1;nc|ENSG00000185684|Q6ZTU2-6|EP400P1	EP400|p.D2035Afs*2|1|0.12|ENSG00000183495|chr12:132037992-132037993|-/C|frameshift_variant;REV__nc|ENSG00000183495|Q96L91-4|EP400;REV__EP400|p.P1343Qfs*17|1|0.1|ENSG00000183495|chr12:132017637-132017637|C/-|frameshift_variant;nc|ENSG00000185684|Q6ZTU2-5|EP400P1	REV__nc|ENSG00000183495|Q96L91-4|EP400	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.3563232421875	2	542.31148	1082.60841	-1.0929	-0.00059268	0.43396	0.00023534	-0.65892	-0.00035734	542.3118985071468	46.548	0.82366	43.475	43.241	44.065	-3.0724					23	15	2	0	0	0	0.027462	1	2476	2476		17.365	0	1	88656			46126	22365;8079;28107;15216	38207	38230	49579	49579					0.07040816880339662
QLVQVKEAER	10	Unmodified	_QLVQVKEAER_					0	0	0		nc|ENSG00000152969|Q96N16|JAKMIP1;ENSG00000152969|ENST00000409021|JAKMIP1;nc|ENSG00000152969|Q96N16-6|JAKMIP1;nc|ENSG00000152969|Q96N16-7|JAKMIP1;nc|ENSG00000152969|Q96N16-5|JAKMIP1;nc|ENSG00000152969|Q96N16-3|JAKMIP1;JAKMIP1|p.R424Sfs*9|1|0.04|ENSG00000152969|chr4:6078969-6078970|-/GAATA|frameshift_variant;nc|ENSG00000152969|Q96N16-4|JAKMIP1	nc|ENSG00000152969|Q96N16|JAKMIP1	nc|ENSG00000152969|Q96N16|JAKMIP1	MULTI-MSMS	OvCa99_classI_Rep5	1	600.3427734375	2	600.340769	1198.66699	-0.47646	-0.00028604	0.16014	9.6138E-05	-0.31632	-0.0001899	600.3408312910293	65.487	0.63327	65.487	65.271	65.904	0					44	15	4	0	0	0	0.12609	1	6023	6023		107.01	0.32444	1	6151600			46127	5652	38208	38231	49580	49580					0.07559873454783883
QLVRGVREPPR	11	Unmodified	_QLVRGVREPPR_					0	0	0			REV__ENST00000543450.1_1_11:71779123-71779267:-|nuORF	REV__ENST00000543450.1_1_11:71779123-71779267:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.26251220703125	3	436.261594	1305.76295	0.30224	0.00013186	-0.78005	-0.00034031	-0.47781	-0.00020845	436.26132611896287	65.037	2.5312	61.551	61.163	63.694	-3.4854					175	51	6	0	0	0	0.62666	1	4694	4694		42.243	5.9249	1	6796800	+		46128	27390	38209	38232	49581	49581					0.12230066085544422
QLVRREKRG	9	Unmodified	_QLVRREKRG_					0	0	0		ENSG00000130307|ENST00000252597|USHBP1	ENSG00000130307|ENST00000252597|USHBP1	ENSG00000130307|ENST00000252597|USHBP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.8233032226562	2	571.349263	1140.68397	0.23875	0.00013641	0.99281	0.00056724	1.2316	0.00070365	571.3505810610372	73.907	0.89674	73.907	73.317	74.214	0					39	22	3	0	0	0	0.027462	1	7234	7234		14.865	3.9993	1	3562900			46129	3977	38210	38233	49582	49582					0.11925838851266235
QLVRYFPRRWK	11	Unmodified	_QLVRYFPRRWK_					0	0	0			REV__ENSG00000101638|ENST00000315087|ST8SIA5	REV__ENSG00000101638|ENST00000315087|ST8SIA5	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.7618408203125	3	516.968522	1547.88374	-0.92771	-0.0004796	3.6558	0.00189	2.7281	0.0014104	517.3036249163671	59.211	0.83356	59.211	58.932	59.766	0					44	21	3	0	0	0	0.026461	1	5137	5137		8.7993	5.3906	1	1342900	+		46130	17509	38211	38234	49583	49583					0.13170893798996985
QLVSDLTIL	9	Unmodified	_QLVSDLTIL_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OvCa9_classI_Rep2	2	501.29656982421875	2	501.297507	1000.58046	-1.7009	-0.00085264	1.4294	0.00071655	-0.27147	-0.00013609	501.29808755011607	120.33	1.4803	120.16	119.84	121.32	-0.17137					84	29	5	0	0	0	0.37135	1	11627	11627		54.776	1.8396	1	488720	+		46131	20257	38212	38235	49584	49584					0.08019493900224006
QLVSEPVTISL	11	Unmodified	_QLVSEPVTISL_					0	0	0		ENSG00000216588|ENST00000402988|IGSF23	ENSG00000216588|ENST00000402988|IGSF23	ENSG00000216588|ENST00000402988|IGSF23	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.33154296875	2	593.339904	1184.66525	-0.41736	-0.00024764	1.8883	0.0011204	1.4709	0.00087275	593.8431450003442	63.647	0.7955	63.647	63.414	64.21	0					27	19	2	0	0	0	0.025759	1	5825	5825		42.864	14.982	1	298580			46132	9214	38213	38236	49585	49585					0.080308196462056
QLVSITFIL	9	Unmodified	_QLVSITFIL_					0	0	0		ENST00000487055.1_1_5:132036305-132039285:-|nuORF	ENST00000487055.1_1_5:132036305-132039285:-|nuORF	ENST00000487055.1_1_5:132036305-132039285:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.7965087890625	2	517.318243	1032.62193	-0.79767	-0.00041265	0.0029529	1.5276E-06	-0.79472	-0.00041112	517.3179109448502	100.55	0.6457	99.715	99.509	100.15	-0.83051					16	12	2	0	0	0	0.027462	1	9180	9180		16.473	0	1	19684			46133	12634	38214	38237	49586	49586					0.10692674659549084
QLVSNFLEI	9	Unmodified	_QLVSNFLEI_					0	0	0			REV__ENSG00000160294|ENST00000291688|MCM3AP	REV__ENSG00000160294|ENST00000291688|MCM3AP	MULTI-MSMS	OvCa9_classI_Rep3	3	531.7974243164062	2	531.795132	1061.57571	2.4154	0.0012845	0.52245	0.00027783	2.9378	0.0015623	531.7953522843117	58.432	0.65997	55.305	54.917	55.577	-3.1264					29	17	2	0	0	0	0.64427	1	1821	1821		26.693	0	1	18675	+		46134	20653	38215	38238	49587	49587					0.04738609757464474
QLVTRRELL	9	Unmodified	_QLVTRRELL_					0	0	0			REV__ENSG00000180530|ENST00000318948|NRIP1	REV__ENSG00000180530|ENST00000318948|NRIP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	564.81005859375	2	564.348397	1126.68224	0.32369	0.00018267	-3.9403	-0.0022237	-3.6166	-0.002041	564.3462547224822	108.06	0.44534	107.83	107.63	108.07	-0.22498					13	8	2	0	0	0	0.027462	1	10138	10138		16.473	0	1	36798	+		46135	22178	38216	38239	49588	49588					0.12396785042665215
QLVVMVLVE	9	Unmodified	_QLVVMVLVE_					0	0	0		nc|ENSG00000187010|Q02161-5|RHD;nc|ENSG00000188672|P18577-6|RHCE;nc|ENSG00000188672|P18577-13|RHCE;nc|ENSG00000188672|P18577-12|RHCE;ENSG00000187010|ENST00000328664|RHD;ENSG00000188672|ENST00000294413|RHCE;ENST00000527187.5_1_1:25712128-25747316:-|nuORF;ENST00000564398.5_1_1:25598999-25633293:+|nuORF;nc|ENSG00000187010|Q02161-6|RHD;nc|ENSG00000188672|P18577-5|RHCE;nc|ENSG00000188672|P18577-2|RHCE;nc|ENSG00000188672|P18577-11|RHCE;nc|ENSG00000187010|Q02161-2|RHD;nc|ENSG00000188672|P18577-7|RHCE;nc|ENSG00000187010|Q02161-3|RHD;nc|ENSG00000188672|P18577-10|RHCE;nc|ENSG00000188672|P18577-8|RHCE;nc|ENSG00000188672|P18577-3|RHCE;nc|ENSG00000188672|P18577-4|RHCE;nc|ENSG00000188672|P18577-9|RHCE;nc|ENSG00000188672|P18577-14|RHCE;nc|ENSG00000187010|Q02161-4|RHD	nc|ENSG00000187010|Q02161-5|RHD	nc|ENSG00000187010|Q02161-5|RHD	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7858276367188	2	515.304278	1028.594	-0.61033	-0.0003145	4.1454	0.0021361	3.535	0.0018216	515.3063104454736	48.524	0.38576	48.524	48.332	48.718	0					18	8	3	0	0	0	0.027433	1	3554	3554		42.396	0	1	391540			46136	15222	38217	38240	49589	49589					0.0808502840784513
QLVYKKLKTF	10	Unmodified	_QLVYKKLKTF_					0	0	0		L1MA1_dup882|chr3:174894625-174897831:+|1.387705056550523|0.3345806313734131|2.05|429.0|50|2|sense	L1MA1_dup882|chr3:174894625-174897831:+|1.387705056550523|0.3345806313734131|2.05|429.0|50|2|sense	L1MA1_dup882|chr3:174894625-174897831:+|1.387705056550523|0.3345806313734131|2.05|429.0|50|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	422.7196044921875	3	423.263941	1266.76999	-0.52197	-0.00022093	3.6756	0.0015558	3.1537	0.0013348	423.2654109132493	28.415	0.3982	28.415	28.24	28.638	0					15	7	3	0	0	0	0.027062	1	919	919		26.063	10.057	1	78102			46137	14572	38218	38241	49590	49590					0.14727985913418706
QLWANPNAEL	10	Unmodified	_QLWANPNAEL_					0	0	0			REV__ENSG00000186335|ENST00000335244|SLC36A2	REV__ENSG00000186335|ENST00000335244|SLC36A2	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2883911132812	2	578.293288	1154.57202	-7.6021	-0.0043963	1.2846	0.00074285	-6.3176	-0.0036534	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.79917	1	13664	13664		19.104	0.84144	1	1429200	+		46138	22577	38219	38242	49591	49591					0.0009193998362206912
QLWFLWFW	8	Unmodified	_QLWFLWFW_					0	0	0		ENST00000433446.1_1_7:86781444-86781504:-|nuORF	ENST00000433446.1_1_7:86781444-86781504:-|nuORF	ENST00000433446.1_1_7:86781444-86781504:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	612.8108520507812	2	613.313295	1224.61204	-0.27963	-0.0001715	-2.945	-0.0018062	-3.2247	-0.0019777	613.3114185477446	54.385	0.90098	54.385	53.774	54.675	0					41	21	2	0	0	0	0.028476	1	4386	4386		23.037	0	1	922110			46139	11832	38220	38243	49592	49592					0.008715314448181744
QLWLALLI	8	Unmodified	_QLWLALLI_					0	0	0		tr|A0A553SIR2|A0A553SIR2_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_15260PE=4SV=1	tr|A0A553SIR2|A0A553SIR2_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_15260PE=4SV=1	tr|A0A553SIR2|A0A553SIR2_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_15260PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.2624816894531	2	485.310221	968.605889	0.13495	6.549E-05	-4.1092	-0.0019942	-3.9743	-0.0019288	485.3077276205763	57.486	0.71937	57.486	57.264	57.984	0					27	16	2	0	0	0	0.028476	1	4853	4853		19.36	0	1	648420			46140	33415	38221	38244	49593	49593					0.12033013213317645
QLWLQLLL	8	Unmodified	_QLWLQLLL_					0	0	0		nc|ENSG00000289762|P0DQW1|SMIM46;ENST00000536649.5_1_19:14223138-14223288:-|nuORF	nc|ENSG00000289762|P0DQW1|SMIM46	nc|ENSG00000289762|P0DQW1|SMIM46	MULTI-MSMS	OvCa99_classI_Rep5	1	513.8207397460938	2	513.820953	1025.62735	1.4472	0.00074363	-3.2525	-0.0016712	-1.8053	-0.00092758	513.8191028899041	118.84	0.88754	118.84	118.58	119.47	0					49	18	3	0	0	0	0.59148	1	13622	13622		65.803	7.9919	1	1359900			46141	13392	38222	38245	49594	49594					0.11556398242055366
QLWNKPLV	8	Unmodified	_QLWNKPLV_					0	0	0		ENSG00000092094|ENST00000206542|OSGEP;ENST00000554699.1_1_14:20919446-20922842:-|nuORF	ENSG00000092094|ENST00000206542|OSGEP	ENSG00000092094|ENST00000206542|OSGEP	MULTI-MSMS	OvCa99_classI_Rep5	1	499.294189453125	2	499.295102	996.575651	1.4769	0.00073742	-4.0622	-0.0020282	-2.5853	-0.0012908	499.2929637979914	74.74	0.73471	74.74	74.517	75.251	0					48	17	4	0	0	0	0.61758	1	7391	7391		60.294	0	1	13993000			46142	1885	38223	38246	49595	49595					0.07722654548126684
QLWNRRSW	8	Unmodified	_QLWNRRSW_					0	0	0		ENST00000568689.5_1_16:733170-734340:-|nuORF;ENST00000569441.5_1_16:733170-733950:-|nuORF	ENST00000568689.5_1_16:733170-734340:-|nuORF	ENST00000568689.5_1_16:733170-734340:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.3014526367188	2	573.301781	1144.58901	-0.99587	-0.00057094	4.4349	0.0025425	3.439	0.0019716	573.3041160855337	26.682	0.24958	26.682	26.542	26.792	0					6	4	2	0	0	0	0.028476	1	714	714		31.955	10.269	1	16524			46143	13871	38224	38247	49596	49596					0.022499053800856927
QLWNWVPE	8	Unmodified	_QLWNWVPE_					0	0	0		nc|ENSG00000028137|P20333-2|TNFRSF1B;ENST00000492361.1_1_1:12227075-12267074:+|nuORF;ENSG00000028137|ENST00000376259|TNFRSF1B	nc|ENSG00000028137|P20333-2|TNFRSF1B	nc|ENSG00000028137|P20333-2|TNFRSF1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.8045654296875	2	536.266542	1070.51853	-1.053	-0.00056469	-0.038928	-2.0876E-05	-1.0919	-0.00058556	536.2660992813259	65.786	0.39761	65.786	65.586	65.984	0					17	9	3	0	0	0	0.028476	1	6047	6047		28.254	2.8041	1	446470			46144	1058	38225	38248	49597	49597					-0.013908127282320493
QLWQERERRQQ	11	Unmodified	_QLWQERERRQQ_					0	0	0		LRCH4|p.K594Lfs*7|1|0.06|ENSG00000077454|chr7:100575779-100575780|-/CAGCAGCAGCAGCAGGACAG|frameshift_variant;ENSG00000077454|ENST00000310300|LRCH4;ENST00000467201.5_1_7:100174858-100176198:-|nuORF;ENST00000498539.1_1_7:100174858-100175272:-|nuORF	LRCH4|p.K594Lfs*7|1|0.06|ENSG00000077454|chr7:100575779-100575780|-/CAGCAGCAGCAGCAGGACAG|frameshift_variant	LRCH4|p.K594Lfs*7|1|0.06|ENSG00000077454|chr7:100575779-100575780|-/CAGCAGCAGCAGCAGGACAG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.3334350585938	3	519.6062	1555.79677	-1.2312	-0.00063973	2.3443	0.0012181	1.1131	0.00057838	519.6075810821362	73.369	0.67599	69.973	69.881	70.557	-3.3961					16	13	2	0	0	0	0.026448	1	5733	5733		5.6988	0	1	26721			46145	1573	38226	38249	49598	49598					0.04110442786645763
QLWQVGLV	8	Unmodified	_QLWQVGLV_					0	0	0			REV__ENST00000529437.1_1_10:102286710-102289623:-|nuORF	REV__ENST00000529437.1_1_10:102286710-102289623:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.7913818359375	2	471.774003	941.533452	2.7087	0.0012779	0.51821	0.00024448	3.2269	0.0015224	471.7734343144185	75.542	0.47339	75.542	75.128	75.601	0					18	11	2	0	0	0	0.028476	1	7492	7492		52.299	0	1	217180	+		46146	21160	38227	38250	49599	49599					0.060346791397591915
QLWWHRPD	8	Unmodified	_QLWWHRPD_					0	0	0		ENST00000270776.12_1_1:10477506-10477563:+|nuORF	ENST00000270776.12_1_1:10477506-10477563:+|nuORF	ENST00000270776.12_1_1:10477506-10477563:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2916259765625	2	569.283057	1136.55156	-0.25235	-0.00014366	0.19737	0.00011236	-0.054983	-3.1301E-05	569.2830033909365	40.774	0.48797	40.774	40.526	41.014	0					10	5	2	0	0	0	0.028476	1	2514	2514		29.15	12.432	1	424210			46147	9989	38228	38251	49600	49600					-0.011251858855302999
QLYDKGLVY	9	Unmodified	_QLYDKGLVY_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	OvCa9_classI_Rep3	3	549.7960205078125	2	549.795132	1097.57571	-1.0289	-0.00056566	0.8575	0.00047145	-0.17136	-9.4213E-05	549.7954042652791	89.905	1.5361	87.824	87.337	88.873	-2.0805					79	29	4	0	0	0	0.11471	3	5552	5552;5557;5564		93.195	34.414	1	648790			46148	8588	38229	38252	49601;49602;49603	49601					0.030826097574845335
QLYDKGLVY	9	Unmodified	_QLYDKGLVY_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.7959594726562	2	549.795132	1097.57571	0.024239	1.3327E-05	-0.14629	-8.0429E-05	-0.12205	-6.7103E-05	549.794889146897	90.321	1.5813	87.746	87.298	88.879	-2.575					77	30	3	0	0	0	0.091859	2	7778	7778;7790		99.375	39.257	1	510560			46149	8588	38229	38252	49604;49605	49604					0.030826097574845335
QLYDKGLVY	9	Unmodified	_QLYDKGLVY_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	549.795132	1097.57571	2.1526	0.0011835	-2.3545	-0.0012945	-0.20182	-0.00011096	549.7936425037614	89.265	1.4845	87.897	87.379	88.863	-1.3676	0.074817	-0.0024994	NaN	99.375	70	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	333890			46150	8588	38229	38252							0.030826097574845335
QLYELSEL	8	Unmodified	_QLYELSEL_					0	0	0			REV__SLITRK2|p.N294Tfs*14|1|0.12|ENSG00000185985|chrX:145823304-145823304|C/-|frameshift_variant	REV__SLITRK2|p.N294Tfs*14|1|0.12|ENSG00000185985|chrX:145823304-145823304|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	497.7586975097656	2	497.758215	993.501877	1.1481	0.00057149	0.95463	0.00047518	2.1028	0.0010467	497.75847500918576	143.93	0.8363	143.93	143.71	144.55	0					32	16	3	0	0	0	0.58851	1	16828	16828		66.429	3.123	1	140560	+		46151	22551	38230	38253	49606	49606					0.004866415951369163
QLYHPYYY	8	Unmodified	_QLYHPYYY_					0	0	0			REV__nc|ENSG00000144642|Q6XE24-3|RBMS3	REV__nc|ENSG00000144642|Q6XE24-3|RBMS3	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.5994873046875	2	573.766374	1145.5182	-0.74081	-0.00042505	3.1246	0.0017928	2.3837	0.0013677	573.7678242320738	53.658	0.42163	53.658	53.432	53.854	0					13	9	2	0	0	0	0.028476	1	4296	4296		39.021	9.8719	1	202200	+		46152	19923	38231	38254	49607	49607					-0.04874232448105431
QLYIDTLQD	9	Unmodified	_QLYIDTLQD_					0	0	0			REV__nc|ENSG00000130939|O95155-3|UBE4B	REV__nc|ENSG00000130939|O95155-3|UBE4B	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.7787475585938	2	554.779679	1107.5448	-1.881	-0.0010436	1.6838	0.00093412	-0.19727	-0.00010944	554.7804236053477	148.65	1.6994	147.21	146.98	148.68	-1.4344					63	34	3	0	0	0	0.63422	1	14676	14676		27.882	1.1893	1	77925	+		46153	18982	38232	38255	49608	49608					-0.00466588347421748
QLYLQRPE	8	Unmodified	_QLYLQRPE_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.78125	2	523.785099	1045.55564	-2.8184	-0.0014762	-2.9679	-0.0015545	-5.7862	-0.0030307	523.7823858554729	126.25	0.88468	124.83	124.58	125.46	-1.4143					52	17	4	0	0	0	0.70469	1	12021	12021		42.396	1.618	1	25884			46154	6494	38233	38256	49609	49609					0.03468858817518594
QLYLQRPE	8	Unmodified	_QLYLQRPE_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	523.785099	1045.55564	0.65532	0.00034325	-6.0454	-0.0031665	-5.3901	-0.0028233	523.7804815386675	125.27	0.93943	125.03	124.61	125.55	-0.2359	0.11062	-0.00065399	NaN	42.396	41	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24821			46155	6494	38233	38256							0.03468858817518594
QLYLQRPE	8	Unmodified	_QLYLQRPE_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	523.785099	1045.55564	1.1662	0.00061086	-7.2437	-0.0037941	-6.0774	-0.0031833	523.7802578107627	125.95	1.7726	124.9	123.84	125.62	-1.0519	-0.023919	-0.0019092	NaN	42.396	56	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28194			46156	6494	38233	38256							0.03468858817518594
QLYLTADSK	9	Unmodified	_QLYLTADSK_					0	0	0		tr|A0A553SM29|A0A553SM29_NIACIPhosphoenolpyruvatecarboxylaseOS=NialliacirculansOX=1397GN=ppcPE=3SV=1	tr|A0A553SM29|A0A553SM29_NIACIPhosphoenolpyruvatecarboxylaseOS=NialliacirculansOX=1397GN=ppcPE=3SV=1	tr|A0A553SM29|A0A553SM29_NIACIPhosphoenolpyruvatecarboxylaseOS=NialliacirculansOX=1397GN=ppcPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.8226318359375	2	519.776939	1037.53933	1.4572	0.00075742	0.33811	0.00017574	1.7953	0.00093316	519.7769269109597	136.32	0.37683	136.32	136.21	136.58	0					10	7	2	0	0	0	0.027462	1	15879	15879		16.717	0	1	102000			46157	33790	38234	38257	49610	49610					0.022057328607616
QLYRLWLQL	9	Unmodified	_QLYRLWLQL_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;ZNFX1|p.V1053Afs*12|1|0.06|ENSG00000124201|chr20:49252778-49252779|-/TCTCGGCTCACTGCAACCACCG|frameshift_variant	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	OvCa9_classI_Rep2	2	616.86376953125	2	616.861141	1231.70773	3.1131	0.0019204	1.3263	0.00081813	4.4394	0.0027385	616.8619391818793	25.113	1.05	22.404	22.261	23.311	-2.7097					60	23	4	0	0	0	0.71128	1	271	271		7.6903	0	1	418920			46158	3631	38235	38258	49611	49611					0.1011425956507992
QLYVIVAQL	9	Unmodified	_QLYVIVAQL_					0	0	0		ENSG00000108231|ENST00000371418|LGI1;nc|ENSG00000108231|O95970-3|LGI1	ENSG00000108231|ENST00000371418|LGI1	ENSG00000108231|ENST00000371418|LGI1	MSMS	OvCa9_classI_Rep3	3	523.8153076171875	2	523.815867	1045.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.26	1	122.22	121.72	122.72	-1.0377								0	0	0	0.16924	1	9506	9506		53.351	0.41475	1				46159	2640	38236	38259	49612	49612					0.0961979051680828
QMFRNIKE	8	Unmodified	_QMFRNIKE_					0	0	0			REV__CON__Q3SZH5	REV__CON__Q3SZH5	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.7875366210938	2	533.279126	1064.5437	-0.18143	-9.6752E-05	3.4095	0.0018182	3.2281	0.0017215	533.2802010091622	87.65	1.03	85.474	85.087	86.117	-2.1768					49	19	4	0	0	0	0.028476	1	5312	5312		64.207	20.09	1	149510	+	+	46160	16210	38237	38260	49613	49613					0.014009188026875563
QMFRNIKE	8	Unmodified	_QMFRNIKE_					0	0	0			REV__CON__Q3SZH5	REV__CON__Q3SZH5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	533.279126	1064.5437	-0.65746	-0.00035061	2.8782	0.0015349	2.2208	0.0011843	533.2802518549122	86.71	0.98172	85.279	84.909	85.891	-1.4311	-0.12462	-0.0011491	NaN	64.207	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67387	+	+	46161	16210	38237	38260							0.014009188026875563
QMKAETDVIN	10	Unmodified	_QMKAETDVIN_					0	0	0			REV__ENSG00000118898|ENST00000345988|PPL	REV__ENSG00000118898|ENST00000345988|PPL	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.8367919921875	2	574.784438	1147.55432	1.8832	0.0010825	-3.9941	-0.0022957	-2.1108	-0.0012133	574.7820990602091	85.841	0.65061	85.841	85.422	86.073	0					21	15	2	0	0	0	0.026688	1	9006	9006		40.778	0	1	266340	+		46162	18419	38238	38261	49614	49614					-0.013551433335351248
QMKKLRTIYKK	11	Unmodified	_QMKKLRTIYKK_					0	0	0		tr|A0A553SIB4|A0A553SIB4_NIACISWIMzincfingerfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_14490PE=4SV=1	tr|A0A553SIB4|A0A553SIB4_NIACISWIMzincfingerfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_14490PE=4SV=1	tr|A0A553SIB4|A0A553SIB4_NIACISWIMzincfingerfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_14490PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	479.63238525390625	3	479.630518	1435.86972	-0.20282	-9.7278E-05	3.1921	0.001531	2.9892	0.0014337	479.6320653010283	29.762	1.3942	29.762	29.337	30.731	0					81	27	5	0	0	0	0.72524	1	1114	1114		12.433	2.3289	1	598080			46163	33363	38239	38262	49615	49615					0.16922480255720984
QMKKLVDYA	9	Unmodified	_QMKKLVDYA_					0	0	0			REV__nc|ENSG00000174485|Q7Z401|DENND4A	REV__nc|ENSG00000174485|Q7Z401|DENND4A	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.2950439453125	2	548.296985	1094.57942	0.52053	0.00028541	-4.0945	-0.002245	-3.574	-0.0019596	548.2950889669573	33.486	4.8857	30.698	30.11	34.996	-2.7881					278	97	6	0	0	0	0.46377	1	961	961		45.952	1.8352	1	7055400	+		46164	21836	38240	38263	49616	49616					0.03590956259699851
QMLDLLVQN	9	Unmodified	_QMLDLLVQN_					0	0	0		tr|A0A553SUD2|A0A553SUD2_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_06755PE=4SV=1	tr|A0A553SUD2|A0A553SUD2_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_06755PE=4SV=1	tr|A0A553SUD2|A0A553SUD2_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_06755PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.798095703125	2	537.286617	1072.55868	-0.76545	-0.00041127	-2.4397	-0.0013108	-3.2051	-0.0017221	537.2851386743293	107.05	1.4191	106.74	106.47	107.89	-0.30836					63	28	3	0	0	0	0.027402	1	10006	10006		66.429	0	1	181900			46165	34595	38241	38264	49617	49617					0.02530365880033969
QMLEMLVLE	9	Unmodified	_QMLEMLVLE_					0	0	0		ENST00000594468.1_1_19:58988585-58988960:+|nuORF;ENST00000391694.4_1_19:58988585-58991546:+|nuORF;nc|ENSG00000083838|Q9NWS9-2|ZNF446;ENSG00000083838|ENST00000594369|ZNF446	ENST00000594468.1_1_19:58988585-58988960:+|nuORF	ENST00000594468.1_1_19:58988585-58988960:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.3236694335938	2	553.285228	1104.5559	-0.43899	-0.00024289	3.408	0.0018856	2.969	0.0016427	553.2868150283349	67.744	0.31203	67.744	67.604	67.916	0					10	7	2	0	0	0	0.027462	1	6352	6352		27.882	13.218	1	165980			46166	1704	38242	38265	49618	49618					0.007807744308593101
QMLLIVVKP	9	Unmodified	_QMLLIVVKP_					0	0	0		tr|A0A553SSZ2|A0A553SSZ2_NIACICupindomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03965PE=4SV=1	tr|A0A553SSZ2|A0A553SSZ2_NIACICupindomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03965PE=4SV=1	tr|A0A553SSZ2|A0A553SSZ2_NIACICupindomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03965PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.8192138671875	2	520.830463	1039.64637	-0.079236	-4.1268E-05	0.30815	0.0001605	0.22892	0.00011923	520.8307778346131	161.88	0.71458	161.88	161.46	162.18	0					20	13	2	0	0	0	0.027462	1	18979	18979		21.96	1.9631	1	18453			46167	34438	38243	38266	49619	49619					0.12813611541423597
QMLLKKGADP	10	Unmodified	_QMLLKKGADP_					0	0	0		ANKRD55|p.N379Rfs*2|1|0.04|ENSG00000164512|chr5:56111612-56111613|-/C|frameshift_variant;ENSG00000164512|ENST00000341048|ANKRD55	ANKRD55|p.N379Rfs*2|1|0.04|ENSG00000164512|chr5:56111612-56111613|-/C|frameshift_variant	ANKRD55|p.N379Rfs*2|1|0.04|ENSG00000164512|chr5:56111612-56111613|-/C|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.7988891601562	2	550.810259	1099.60597	-0.51076	-0.00028133	4.0731	0.0022435	3.5624	0.0019622	550.8132173159029	94.031	0.47781	91.524	91.393	91.871	-2.5072					13	9	2	0	0	0	0.026688	1	8214	8214		40.778	6.6056	1	32152			46168	94	38244	38267	49620	49620					0.06014645151026343
QMLLKKGADP	10	Unmodified	_QMLLKKGADP_					0	0	0		ANKRD55|p.N379Rfs*2|1|0.04|ENSG00000164512|chr5:56111612-56111613|-/C|frameshift_variant;ENSG00000164512|ENST00000341048|ANKRD55	ANKRD55|p.N379Rfs*2|1|0.04|ENSG00000164512|chr5:56111612-56111613|-/C|frameshift_variant	ANKRD55|p.N379Rfs*2|1|0.04|ENSG00000164512|chr5:56111612-56111613|-/C|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	550.810259	1099.60597	0.80869	0.00044544	5.1164	0.0028182	5.9251	0.0032636	550.813225843115	92.765	0.76425	91.597	91.341	92.105	-1.168	0.035221	-0.0011369	NaN	40.778	24	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18732			46169	94	38244	38267							0.06014645151026343
QMLLKKGADP	10	Unmodified	_QMLLKKGADP_					0	0	0		ANKRD55|p.N379Rfs*2|1|0.04|ENSG00000164512|chr5:56111612-56111613|-/C|frameshift_variant;ENSG00000164512|ENST00000341048|ANKRD55	ANKRD55|p.N379Rfs*2|1|0.04|ENSG00000164512|chr5:56111612-56111613|-/C|frameshift_variant	ANKRD55|p.N379Rfs*2|1|0.04|ENSG00000164512|chr5:56111612-56111613|-/C|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	550.810259	1099.60597	-1.6457	-0.00090648	7.0951	0.003908	5.4493	0.0030015	550.8142431335585	93.526	0.60631	91.565	91.328	91.935	-1.9617	0.0027537	0.0010427	NaN	40.778	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27561			46170	94	38244	38267							0.06014645151026343
QMLLYKLISL	10	Unmodified	_QMLLYKLISL_					0	0	0			REV__ENST00000348370.8_1_15:59373254-59373323:+|nuORF	REV__ENST00000348370.8_1_15:59373254-59373323:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.5235595703125	3	407.914032	1220.72027	0.98856	0.00040325	3.188	0.0013004	4.1766	0.0017037	407.9161894624667	40.948	0.21888	40.948	40.795	41.014	0					5	4	2	0	0	0	0.026739	1	2521	2521		37.508	11.616	1	21443	+		46171	24709	38245	38268	49621	49621					0.11873534913115691
QMLNEPVQE	9	Unmodified	_QMLNEPVQE_					0	0	0		ENSG00000119318|ENST00000358015|RAD23B;nc|ENSG00000119318|P54727-2|RAD23B	ENSG00000119318|ENST00000358015|RAD23B	ENSG00000119318|ENST00000358015|RAD23B	MULTI-MSMS	OvCa99_classI_Rep5	1	544.2584838867188	2	544.258056	1086.50156	-0.50862	-0.00027682	-2.8737	-0.001564	-3.3823	-0.0018409	544.2563902280468	66.428	0.56734	66.428	66.212	66.779	0					33	13	4	0	0	0	0.14998	1	6149	6149		84.916	8.1414	1	2646200			46172	3352	38246	38269	49622	49622					-0.038231013963468286
QMLNEPVQE	9	Unmodified	_QMLNEPVQE_					0	0	0		ENSG00000119318|ENST00000358015|RAD23B;nc|ENSG00000119318|P54727-2|RAD23B	ENSG00000119318|ENST00000358015|RAD23B	ENSG00000119318|ENST00000358015|RAD23B	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	544.258056	1086.50156	-1.2503	-0.00068047	-5.3226	-0.0028968	-6.5728	-0.0035773	544.2549112670924	70.095	0.4922	66.614	66.442	66.934	-3.4812	0.092716	-0.0021834	NaN	84.916	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48111			46173	3352	38246	38269							-0.038231013963468286
QMLQIQMLI	9	Unmodified	_QMLQIQMLI_					0	0	0		L1M1_dup621|chr1:224985612-224987088:+|1.1406864670825911|0.0275683224481481|5.37|427.0|99|3|anti-sense	L1M1_dup621|chr1:224985612-224987088:+|1.1406864670825911|0.0275683224481481|5.37|427.0|99|3|anti-sense	L1M1_dup621|chr1:224985612-224987088:+|1.1406864670825911|0.0275683224481481|5.37|427.0|99|3|anti-sense	MSMS	OvCa99_classI_Rep5	1	559.3076171875	2	559.309038	1116.60352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	117.62	1	117.62	117.12	118.12	0								0	0	0	0.16648	1	13475	13475		60.972	0	1				46174	14540	38247	38270	49623	49623					0.04988473421690287
QMLVSVEEL	9	Unmodified	_QMLVSVEEL_					0	0	0			REV__ENST00000471217.5_1_10:93716996-93718971:+|nuORF	REV__ENST00000471217.5_1_10:93716996-93718971:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	524.271240234375	2	524.273175	1046.5318	0.85689	0.00044924	-4.4765	-0.0023469	-3.6196	-0.0018977	524.2706948277186	120.46	3.5918	119.43	118.68	122.27	-1.0271					167	69	5	0	0	0	0.041116	3	9215	9190;9215;9260		125.81	14.166	1	1392700	+		46175	26273	38248	38271	49624;49625;49626	49625					0.01039257268826077
QMLVSVEEL	9	Unmodified	_QMLVSVEEL_					0	0	0			REV__ENST00000471217.5_1_10:93716996-93718971:+|nuORF	REV__ENST00000471217.5_1_10:93716996-93718971:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.27099609375	2	524.273175	1046.5318	-1.2154	-0.00063721	-2.3353	-0.0012243	-3.5507	-0.0018615	524.271834383769	120.77	3.305	119.42	118.72	122.02	-1.3479					160	64	5	0	0	0	0.041116	3	11372	11372;11384;11409		125.81	8.9104	1	1764900	+		46176	26273	38248	38271	49627;49628;49629	49627					0.01039257268826077
QMMIRILVE	9	Unmodified	_QMMIRILVE_					0	0	0			REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	REV__nc|ENSG00000142197|Q9Y3R5-2|DOP1B	MULTI-MSMS	OvCa9_classI_Rep3	3	566.8156127929688	2	566.814487	1131.61442	-0.24812	-0.00014064	2.5122	0.001424	2.2641	0.0012833	566.8159504694337	109.72	2.4602	108.58	108.24	110.71	-1.1444					116	47	3	0	0	0	0.40667	1	7908	7908		51.335	1.3109	1	1478800	+		46177	19775	38249	38272	49630	49630					0.05387875795986474
QMMVNLFRVI	10	Unmodified	_QMMVNLFRVI_					0	0	0			REV__ENST00000449387.1_1_11:28308937-28309159:-|nuORF	REV__ENST00000449387.1_1_11:28308937-28309159:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	417.9168701171875	3	417.563116	1249.66752	0.59305	0.00024764	3.2143	0.0013422	3.8073	0.0015898	417.56425953865374	32.555	0.73559	32.555	32.254	32.989	0					26	14	3	0	0	0	0.02709	1	1412	1412		16.717	0	1	44394	+		46178	25946	38250	38273	49631	49631					0.05267253578654163
QMNDLANKLG	10	Unmodified	_QMNDLANKLG_					0	0	0		tr|A0A553SU77|A0A553SU77_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_06495PE=3SV=1	tr|A0A553SU77|A0A553SU77_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_06495PE=3SV=1	tr|A0A553SU77|A0A553SU77_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_06495PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.7611083984375	2	552.279323	1102.54409	1.3339	0.00073667	3.4668	0.0019147	4.8007	0.0026513	552.281423952246	83.649	0.46542	83.649	83.335	83.801	0					14	10	2	0	0	0	0.026849	1	8699	8699		40.778	0	1	267760			46179	34577	38251	38274	49632	49632					-0.003077062681541065
QMNNIIALI	9	Unmodified	_QMNNIIALI_					0	0	0			REV__ENSG00000155508|ENST00000285896|CNOT8	REV__ENSG00000155508|ENST00000285896|CNOT8	MULTI-SECPEP	OvCa9_classI_Rep2	2	514.8108520507812	2	515.291702	1028.56885	0.15055	7.7578E-05	-3.6243	-0.0018676	-3.4737	-0.00179	515.289990666991	114.43	0.24688	114.31	114.16	114.4	-0.11777					5	4	2	0	0	0	0.027462	1	10865	10865		38.806	10.924	1	10334	+		46180	20427	38252	38275	49633	49633					0.05570973605267682
QMPTFDLYGN	10	Unmodified	_QMPTFDLYGN_					0	0	0		tr|A0A7D6ZJK6|A0A7D6ZJK6_9CLOTSRPBCCdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11400PE=3SV=1	tr|A0A7D6ZJK6|A0A7D6ZJK6_9CLOTSRPBCCdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11400PE=3SV=1	tr|A0A7D6ZJK6|A0A7D6ZJK6_9CLOTSRPBCCdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11400PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.9931640625	2	593.265881	1184.51721	0.051914	3.0799E-05	2.0478	0.0012149	2.0998	0.0012457	593.2669658119722	69.128	0.29089	69.128	68.977	69.268	0					11	6	2	0	0	0	0.026624	1	6569	6569		54.722	0	1	317110			46181	35645	38253	38276	49634	49634					-0.06766814879301819
QMQRVAIAR	9	Unmodified	_QMQRVAIAR_					0	0	0		tr|A0A7D6VPT2|A0A7D6VPT2_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12890PE=3SV=1	tr|A0A7D6VPT2|A0A7D6VPT2_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12890PE=3SV=1	tr|A0A7D6VPT2|A0A7D6VPT2_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12890PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3321533203125	2	536.805842	1071.59713	2.0817	0.0011174	-2.8697	-0.0015405	-0.78806	-0.00042304	536.8040812694607	78.312	0.48871	78.312	77.968	78.457	0					17	11	2	0	0	0	0.027448	1	7926	7926		44.117	2.6902	1	413330			46182	34795	38254	38277	49635	49635					0.0641971630518583
QMSLDYGFVTP	11	Unmodified	_QMSLDYGFVTP_					0	0	0		nc|ENSG00000055957|P19827-3|ITIH1;nc|ENSG00000055957|P19827-2|ITIH1;ITIH1|p.V802Gfs*51|1|0.03|ENSG00000055957|chr3:52790831-52790832|-/GTGACCCCACTGACCTCCATGAGCATCAGGGGCA|frameshift_variant;ENSG00000055957|ENST00000273283|ITIH1	nc|ENSG00000055957|P19827-3|ITIH1	nc|ENSG00000055957|P19827-3|ITIH1	MULTI-SECPEP	OvCa99_classI_Rep5	1	630.2612915039062	2	629.294639	1256.57472	1.4808	0.00093186	-0.40121	-0.00025248	1.0796	0.00067938	629.7953896424318	149.92	0.14909	149.92	149.79	149.94	0					4	2	2	0	0	0	0.025457	1	17552	17552		36.447	4.9169	1	10309			46183	1225	38255	38278	49636	49636					-0.04329972673735938
QMVEFLIKKK	10	Unmodified	_QMVEFLIKKK_					0	0	0		ENSG00000107890|ENST00000376087|ANKRD26	ENSG00000107890|ENST00000376087|ANKRD26	ENSG00000107890|ENST00000376087|ANKRD26	MULTI-MSMS	OvCa9_classI_Rep2	2	632.374755859375	2	632.378309	1262.74206	-1.8152	-0.0011479	-4.2724	-0.0027018	-6.0876	-0.0038497	632.3755521583494	84.187	2.0123	82.64	82.326	84.338	-1.5462					123	39	5	0	0	0	0.39172	1	7242	7242		69.628	6.2012	1	596790			46184	2626	38256	38279	49637	49637					0.12120339661669277
QMYWKALRTK	10	Unmodified	_QMYWKALRTK_					0	0	0			REV__nc|ENSG00000042753|P53680-2|AP2S1	REV__nc|ENSG00000042753|P53680-2|AP2S1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	441.78533935546875	3	442.244664	1323.71216	-0.33606	-0.00014862	-3.3135	-0.0014654	-3.6496	-0.001614	442.2432247594271	21.604	0.25258	20.265	20.119	20.371	-1.3386					7	4	2	0	0	0	0.027142	1	196	196		10.587	0.4829	1	10021	+		46185	16641	38257	38280	49638	49638					0.0632540071630956
QNALRREP	8	Unmodified	_QNALRREP_					0	0	0		ENST00000601807.5_2_19:49952902-49954779:-|nuORF	ENST00000601807.5_2_19:49952902-49954779:-|nuORF	ENST00000601807.5_2_19:49952902-49954779:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.3340148925781	2	492.27269	982.530826	0.62486	0.0003076	3.2355	0.0015927	3.8603	0.0019003	492.27412185353165	45.132	0.4976	42.422	42.049	42.547	-2.7097					15	9	2	0	0	0	0.028476	1	2617	2617		30.504	0	1	50862			46186	14231	38258	38281	49639	49639					0.03886223734787109
QNALVIMKT	9	Unmodified	_QNALVIMKT_					0	0	0		nc|ENSG00000039600|O94993-2|SOX30	nc|ENSG00000039600|O94993-2|SOX30	nc|ENSG00000039600|O94993-2|SOX30	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.3028259277344	2	509.291702	1016.56885	-0.65498	-0.00033358	-3.0793	-0.0015683	-3.7343	-0.0019019	509.28996217026685	91.392	1.218	88.849	88.553	89.771	-2.5425					51	23	3	0	0	0	0.027433	1	7927	7927		42.396	9.5837	1	116720			46187	14869	38259	38282	49640	49640					0.06122973605238258
QNCVSLNSY	9	Unmodified	_QNCVSLNSY_					0	0	0		ENST00000361901.6_2_7:134654560-134654740:+|nuORF	ENST00000361901.6_2_7:134654560-134654740:+|nuORF	ENST00000361901.6_2_7:134654560-134654740:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.2316284179688	2	514.229299	1026.44404	0.8117	0.0004174	-0.26524	-0.00013639	0.54645	0.000281	514.2285039147206	140.24	1.7382	138.74	137.99	139.73	-1.4952					40	33	2	0	0	0	0.61208	1	13691	13691		30.504	6.3009	1	33852			46188	10806	38260	38283	49641	49641					-0.0681194360192876
QNDIDIYSL	9	Unmodified	_QNDIDIYSL_					0	0	0		CON__Q3T052	CON__Q3T052	CON__Q3T052	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.8309326171875	2	540.764029	1079.5135	-3.0145	-0.0016301	0.32736	0.00017703	-2.6871	-0.0014531	541.2648971102155	126.05	0.2971	124.63	124.48	124.78	-1.4143					9	5	2	0	0	0	0.027462	1	11978	11978		26.693	0	1	6406.9		+	46189	650	38261	38284	49642	49642					-0.023071613815318415
QNDIKKIV	8	Unmodified	_QNDIKKIV_					0	0	0		ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	ENSG00000198786|ENST00000361567|MT-ND5	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.77520751953125	2	479.290017	956.565481	0.58515	0.00028046	-0.43219	-0.00020714	0.15297	7.3315E-05	479.2894766239239	72.493	0.63416	72.493	72.208	72.842	0					31	15	3	0	0	0	0.028476	1	7050	7050		37.159	0	1	699840			46190	8873	38262	38285	49643	49643					0.08546046822880271
QNDLLWDKL	9	Unmodified	_QNDLLWDKL_					0	0	0			REV__ENST00000369541.3_1_1:115119312-115119363:-|nuORF	REV__ENST00000369541.3_1_1:115119312-115119363:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	572.8060913085938	2	572.803488	1143.59242	-1.0483	-0.00060045	3.5937	0.0020585	2.5454	0.001458	572.8054415708901	81.131	1.0791	78.42	77.906	78.985	-2.7106					40	21	2	0	0	0	0.11471	1	6659	6659		93.195	5.499	1	452840	+		46191	24941	38263	38286	49644	49644					0.02637110643422602
QNEKFTFSE	9	Unmodified	_QNEKFTFSE_					0	0	0			REV__ENSG00000083093|ENST00000261584|PALB2	REV__ENSG00000083093|ENST00000261584|PALB2	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.781005859375	2	565.261653	1128.50875	0.18476	0.00010444	-4.0605	-0.0022952	-3.8757	-0.0021908	565.760431398307	46.99	1.3999	46.99	46.412	47.812	0					49	31	3	0	0	0	0.027462	1	3367	3367		25.574	4.6271	1	222420	+		46192	17094	38265	38287	49645	49645					-0.05036045524275323
QNEKREYLL	9	Unmodified	_QNEKREYLL_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	OvCa99_classI_Rep5	1	597.7945556640625	2	596.81967	1191.62479	1.1857	0.00070767	3.872	0.0023109	5.0577	0.0030186	596.8218270580184	131.51	0.79442	131.51	131.2	131.99	0					24	16	2	0	0	0	0.027446	1	15299	15299		60.118	8.9256	1	138070			46193	8571	38266	38288	49646	49646					0.036638980464203996
QNELLPLSK	9	Unmodified	_QNELLPLSK_					0	0	0			REV__ENSG00000157601|ENST00000398598|MX1	REV__ENSG00000157601|ENST00000398598|MX1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.262451171875	2	521.300581	1040.58661	-0.98277	-0.00051232	4.0316	0.0021017	3.0488	0.0015894	521.3019760229436	99.296	1.1823	96.971	96.484	97.667	-2.3253					42	22	3	0	0	0	0.027462	1	8859	8859		30.318	0	1	37068	+		46194	20525	38267	38289	49647	49647					0.06794012131740601
QNENNEAKCL	10	Unmodified	_QNENNEAKCL_					0	0	0		ENST00000530903.1_1_11:126073315-126075741:-|nuORF;nc|ENSG00000165526|Q96CM3-2|RPUSD4;ENSG00000165526|ENST00000298317|RPUSD4	ENST00000530903.1_1_11:126073315-126075741:-|nuORF	ENST00000530903.1_1_11:126073315-126075741:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	581.7599487304688	2	581.761494	1161.50844	0.74331	0.00043243	-4.1812	-0.0024324	-3.4379	-0.002	581.7589441600738	124.49	0.78481	124.49	124.24	125.02	0					33	16	3	0	0	0	0.60504	1	14384	14384		41.427	3.6151	1	660710			46195	6575	38268	38290	49648	49648					-0.06585788515781132
QNEPFMFTQ	9	Unmodified	_QNEPFMFTQ_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4;REV__nc|ENSG00000196159|Q6V0I7-2|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.8229370117188	2	571.252774	1140.491	-0.057567	-3.2886E-05	-1.0867	-0.00062079	-1.1443	-0.00065368	571.2517177463515	73.611	0.58585	73.611	73.359	73.945	0					32	14	3	0	0	0	0.027462	1	7204	7204		20.947	0	1	2979200	+		46196	22791;29073	38269	38291	49649	49649					-0.07363084050780344
QNERKKKLP	9	Unmodified	_QNERKKKLP_					0	0	0			REV__ENSG00000175764|ENST00000321582|TTLL11	REV__ENSG00000175764|ENST00000321582|TTLL11	MULTI-SECPEP	OvCa9_classI_Rep2	2	571.8057250976562	2	570.846022	1139.67749	1.1124	0.000635	-1.3449	-0.00076774	-0.23252	-0.00013273	570.8451677580935	89.46	0.64314	88.158	87.938	88.581	-1.302					17	12	2	0	0	0	0.027462	1	7869	7869		45.972	3.5761	1	22991	+		46197	21913	38270	38292	49650	49650					0.11323900899878936
QNESLDLVQ	9	Unmodified	_QNESLDLVQ_					0	0	0			REV__ENSG00000240720|ENST00000458448|LRRD1	REV__ENSG00000240720|ENST00000458448|LRRD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.30322265625	2	523.261653	1044.50875	-0.60705	-0.00031765	0.19983	0.00010456	-0.40723	-0.00021309	523.2615677205356	44.845	0.45039	44.845	44.618	45.068	0					21	9	3	0	0	0	0.027402	1	3060	3060		66.429	2.222	1	422360	+		46198	23440	38271	38293	49651	49651					-0.011720455242993921
QNEVQELQA	9	Unmodified	_QNEVQELQA_					0	0	0			REV__tr|A0A553SPD9|A0A553SPD9_NIACIPyruvatedehydrogenaseE1componentsubunitalphaOS=NialliacirculansOX=1397GN=pdhAPE=4SV=1	REV__tr|A0A553SPD9|A0A553SPD9_NIACIPyruvatedehydrogenaseE1componentsubunitalphaOS=NialliacirculansOX=1397GN=pdhAPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	530.305419921875	2	529.759278	1057.504	-1.0464	-0.00055435	0.95156	0.0005041	-0.09485	-5.0248E-05	529.7595829955075	58.704	1.2825	55.924	55.537	56.82	-2.7801					43	24	3	0	0	0	0.02744	1	4294	4294		44.377	0	1	83540	+		46199	30528	38272	38294	49652	49652					-0.022449296670401964
QNFDRQKN	8	Unmodified	_QNFDRQKN_					0	0	0			REV__ENSG00000132661|ENST00000254998|NXT1	REV__ENSG00000132661|ENST00000254998|NXT1	MULTI-SECPEP	OvCa9_classI_Rep3	3	524.8065795898438	2	525.259779	1048.50501	-0.69357	-0.00036431	0.83364	0.00043788	0.14007	7.3572E-05	525.2599657727753	118.24	1.3387	117.21	116.84	118.17	-1.0324					61	26	3	0	0	0	0.028476	1	8891	8891		60.972	2.7257	1	59776	+		46200	19092	38273	38295	49653	49653					-0.01730670507481591
QNFEVAGQLY	10	Unmodified	_QNFEVAGQLY_					0	0	0			REV__tr|A0A553SSY4|A0A553SSY4_NIACILacIfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03915PE=4SV=1	REV__tr|A0A553SSY4|A0A553SSY4_NIACILacIfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03915PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.3319702148438	2	584.785296	1167.55604	-0.86534	-0.00050604	-0.00046397	-2.7132E-07	-0.86581	-0.00050631	584.7846498698118	53.67	0.42843	53.67	53.305	53.733	0					13	9	2	0	0	0	0.026867	1	4283	4283		42.864	5.7052	1	220810	+		46201	30893	38274	38296	49654	49654					-0.021037662532762624
QNFFFTRVKC	10	Unmodified	_QNFFFTRVKC_					0	0	0		ENST00000487874.1_1_1:35476098-35476426:-|nuORF	ENST00000487874.1_1_1:35476098-35476426:-|nuORF	ENST00000487874.1_1_1:35476098-35476426:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	645.3258666992188	2	645.326608	1288.63866	-0.50398	-0.00032523	0.21234	0.00013703	-0.29164	-0.0001882	645.3266872760835	99.389	1.4299	97.704	97.009	98.438	-1.685					95	27	5	0	0	0	0.77039	1	6746	6746		22.58	0	1	2398300			46202	12656	38275	38297	49655	49655					0.005888522738814572
QNFFIPIPN	9	Unmodified	_QNFFIPIPN_					0	0	0			REV__UBR1|p.D1423Vfs*11|1|0.83|ENSG00000159459|chr15:42976794-42976818|GAACTAACTGAAGAAGGCTGCAGAT/-|frameshift_variant	REV__UBR1|p.D1423Vfs*11|1|0.83|ENSG00000159459|chr15:42976794-42976818|GAACTAACTGAAGAAGGCTGCAGAT/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.3043212890625	2	545.290017	1088.56548	-0.4981	-0.00027161	1.2753	0.00069539	0.77718	0.00042379	545.2908526266881	102.49	1.0524	100.29	99.832	100.88	-2.1994					44	19	3	0	0	0	0.027462	1	9292	9292		30.504	9.5567	1	69238	+		46203	20617	38276	38298	49656	49656					0.02474046822908349
QNFFIPIPN	9	Unmodified	_QNFFIPIPN_					0	0	0			REV__UBR1|p.D1423Vfs*11|1|0.83|ENSG00000159459|chr15:42976794-42976818|GAACTAACTGAAGAAGGCTGCAGAT/-|frameshift_variant	REV__UBR1|p.D1423Vfs*11|1|0.83|ENSG00000159459|chr15:42976794-42976818|GAACTAACTGAAGAAGGCTGCAGAT/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	545.290017	1088.56548	-1.2873	-0.00070194	1.0063	0.00054875	-0.28094	-0.00015319	545.2906003646223	101.06	1.1897	100.3	99.674	100.86	-0.764	-0.011897	-0.00025947	NaN	30.504	50	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70058	+		46204	20617	38276	38298							0.02474046822908349
QNFFIPIPN	9	Unmodified	_QNFFIPIPN_					0	0	0			REV__UBR1|p.D1423Vfs*11|1|0.83|ENSG00000159459|chr15:42976794-42976818|GAACTAACTGAAGAAGGCTGCAGAT/-|frameshift_variant	REV__UBR1|p.D1423Vfs*11|1|0.83|ENSG00000159459|chr15:42976794-42976818|GAACTAACTGAAGAAGGCTGCAGAT/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	545.290017	1088.56548	-1.0091	-0.00055023	1.7452	0.00095162	0.7361	0.00040139	545.2910499556534	101.87	1.1006	100.34	99.793	100.89	-1.5211	0.032852	0.00054628	NaN	30.504	44	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92003	+		46205	20617	38276	38298							0.02474046822908349
QNFFLLPII	9	Unmodified	_QNFFLLPII_					0	0	0			REV__ENSG00000198886|ENST00000361381|MT-ND4	REV__ENSG00000198886|ENST00000361381|MT-ND4	MULTI-MSMS	OvCa99_classI_Rep5	1	552.827880859375	2	552.826235	1103.63792	2.1329	0.0011791	-0.37536	-0.00020751	1.7576	0.00097162	552.8258692380718	137.44	0.61449	137.44	137.21	137.82	0					26	12	3	0	0	0	0.44294	1	16028	16028		47.916	1.9434	1	145220	+		46206	23086	38277	38299	49657	49657					0.09024380896494222
QNFLNQVTE	9	Unmodified	_QNFLNQVTE_					0	0	0			REV__tr|A0A553SFA0|A0A553SFA0_NIACI5-dehydro-2-deoxygluconokinaseOS=NialliacirculansOX=1397GN=iolCPE=3SV=1	REV__tr|A0A553SFA0|A0A553SFA0_NIACI5-dehydro-2-deoxygluconokinaseOS=NialliacirculansOX=1397GN=iolCPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.3280029296875	2	546.769645	1091.52474	-1.4187	-0.00077568	-1.5914	-0.00087015	-3.0101	-0.0016458	546.7695354986655	95.314	0.25046	92.845	92.661	92.912	-2.4685					6	4	2	0	0	0	0.027441	1	8385	8385		40.778	15.328	1	15163	+		46207	29555	38278	38300	49658	49658					-0.017363392873676275
QNFNPLPD	8	Unmodified	_QNFNPLPD_					0	0	0		nc|ENSG00000172987|Q8WWQ2-4|HPSE2;nc|ENSG00000172987|Q8WWQ2-3|HPSE2;nc|ENSG00000172987|Q8WWQ2-2|HPSE2;ENSG00000172987|ENST00000370552|HPSE2	nc|ENSG00000172987|Q8WWQ2-4|HPSE2	nc|ENSG00000172987|Q8WWQ2-4|HPSE2	MULTI-MSMS	OvCa99_classI_Rep5	1	472.7254943847656	2	472.727249	943.439946	-0.21694	-0.00010255	-3.1272	-0.0014783	-3.3441	-0.0015809	472.72566384727116	43.249	0.76677	43.249	43.057	43.823	0					37	17	3	0	0	0	0.59148	1	2843	2843		65.803	3.6958	1	2017000			46208	7339	38279	38301	49659	49659					-0.03403665033329162
QNGEVKAYG	9	Unmodified	_QNGEVKAYG_					0	0	0		nc|ENSG00000180176|P07101-6|TH;nc|ENSG00000180176|P07101-5|TH;ENSG00000180176|ENST00000352909|TH;nc|ENSG00000180176|P07101-4|TH;nc|ENSG00000180176|P07101-2|TH;nc|ENSG00000180176|P07101|TH	nc|ENSG00000180176|P07101-6|TH	nc|ENSG00000180176|P07101-6|TH	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.2706298828125	2	483.237981	964.461409	0.56714	0.00027406	0.15133	7.313E-05	0.71848	0.00034719	483.2385364502525	66.835	0.68377	66.835	66.372	67.055	0					21	16	2	0	0	0	0.027462	1	6176	6176		19.997	0	1	364960			46209	7858	38280	38302	49660	49660					-0.022242800046228695
QNGQPDSII	9	Unmodified	_QNGQPDSII_					0	0	0		ENST00000488519.1_1_9:130825709-130828462:-|nuORF;ENSG00000171169|ENST00000373078|NAIF1	ENST00000488519.1_1_9:130825709-130828462:-|nuORF	ENST00000488519.1_1_9:130825709-130828462:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.2903137207031	2	486.243264	970.471974	1.0613	0.00051606	-0.41214	-0.0002004	0.64918	0.00031566	486.2427869251707	96.851	0.89941	94.426	94.015	94.915	-2.4256					23	17	2	0	0	0	0.027118	1	8582	8582		64.207	9.431	1	46394			46210	7179	38281	38303	49661	49661					-0.01444297350190027
QNGRRKLVL	9	Unmodified	_QNGRRKLVL_					0	0	0			REV__ENSG00000062582|ENST00000317534|MRPS24	REV__ENSG00000062582|ENST00000317534|MRPS24	MULTI-SECPEP	OvCa9_classI_Rep3	3	543.3230590820312	2	542.340907	1082.66726	1.2279	0.00066594	0.45922	0.00024905	1.6871	0.000915	542.3408721881592	119.87	1.0792	118.84	118.63	119.71	-1.0271					36	21	3	0	0	0	0.027462	1	9152	9152		45.952	11.779	1	56283	+		46211	16752	38282	38304	49662	49662					0.12923337965298742
QNHHKLHIV	9	Unmodified	_QNHHKLHIV_					0	0	0		MRPL30|p.P63H|1|0.24|ENSG00000185414|chr2:99194806-99194806|C/A|missense_variant	MRPL30|p.P63H|1|0.24|ENSG00000185414|chr2:99194806-99194806|C/A|missense_variant	MRPL30|p.P63H|1|0.24|ENSG00000185414|chr2:99194806-99194806|C/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.3054809570312	2	563.317432	1124.62031	2.7148	0.0015293	0.077903	4.3884E-05	2.7927	0.0015732	563.3175743994394	121.93	0.60687	121.93	121.61	122.22	0					20	12	2	0	0	0	0.027462	1	14026	14026		24.203	0	1	146880			46212	14840	38283	38305	49663	49663					0.0629847841416904
QNHKVTLL	8	Unmodified	_QNHKVTLL_					0	0	0			REV__ENSG00000146350|ENST00000398212|TBC1D32	REV__ENSG00000146350|ENST00000398212|TBC1D32	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.2606201171875	2	476.782359	951.550165	-0.5747	-0.00027401	0.68999	0.00032897	0.11529	5.4968E-05	476.7826032283355	40.019	0.34989	40.019	39.756	40.106	0					9	7	2	0	0	0	0.028476	1	2395	2395		30.504	8.8013	1	46730	+		46213	20008	38284	38306	49664	49664					0.07245180025711306
QNHKWSAEK	9	Unmodified	_QNHKWSAEK_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.8076171875	2	564.283254	1126.55196	3.0734	0.0017343	-3.9591	-0.0022341	-0.88567	-0.00049977	564.2809031023869	89.274	0.36301	89.274	89.153	89.516	0					10	8	2	0	0	0	0.027462	1	9534	9534		42.396	13.247	1	256570	+		46214	29026	38285	38307	49665	49665					-0.00625810956330497
QNIAKYKV	8	Unmodified	_QNIAKYKV_					0	0	0		nc|ENSG00000185220|Q6P3X8-2|PGBD2;ENSG00000185220|ENST00000329291|PGBD2	nc|ENSG00000185220|Q6P3X8-2|PGBD2	nc|ENSG00000185220|Q6P3X8-2|PGBD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.26483154296875	2	482.284734	962.554916	-0.31457	-0.00015171	0.082267	3.9676E-05	-0.2323	-0.00011204	482.2846064541094	54.166	0.32634	54.166	54.008	54.334	0					14	7	2	0	0	0	0.028476	1	4364	4364		42.474	17.024	1	307420			46215	8233	38286	38308	49666	49666					0.07214064168465484
QNIENIVEV	9	Unmodified	_QNIENIVEV_					0	0	0			REV__tr|A0A553SSU3|A0A553SSU3_NIACIGHKLdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03710PE=4SV=1	REV__tr|A0A553SSU3|A0A553SSU3_NIACIGHKLdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03710PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.8185424804688	2	529.279846	1056.54514	-0.45357	-0.00024006	4.357	0.0023061	3.9034	0.002066	529.2823305247556	114.16	0.59154	114.04	113.86	114.45	-0.11777					13	11	2	0	0	0	0.027462	1	10896	10896		27.882	0	1	16438	+		46216	30880	38287	38309	49667	49667					0.019128313724195323
QNIENIVEV	9	Unmodified	_QNIENIVEV_					0	0	0			REV__tr|A0A553SSU3|A0A553SSU3_NIACIGHKLdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03710PE=4SV=1	REV__tr|A0A553SSU3|A0A553SSU3_NIACIGHKLdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03710PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	529.279846	1056.54514	-0.43969	-0.00023272	3.4894	0.0018469	3.0497	0.0016141	529.281873980707	115.34	0.44531	113.95	113.72	114.17	-1.3977	-0.049082	-0.00042842	NaN	40.778	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20381	+		46217	30880	38287	38309							0.019128313724195323
QNIFPAINL	9	Unmodified	_QNIFPAINL_					0	0	0			REV__nc|ENSG00000164169|Q6P2P2-2|PRMT9	REV__nc|ENSG00000164169|Q6P2P2-2|PRMT9	MULTI-MSMS	OvCa99_classI_Rep5	1	515.2933959960938	2	515.290017	1028.56548	-0.70917	-0.00036543	3.3778	0.0017406	2.6686	0.0013751	515.2916595586944	61.722	1.4211	61.722	61.2	62.621	0					87	33	5	0	0	0	0.22961	1	5441	5441		71.296	5.8303	1	14549000	+		46218	20953	38288	38310	49668	49668					0.05234046822874916
QNIIKQVAI	9	Unmodified	_QNIIKQVAI_					0	0	0		nc|ENSG00000170322|Q6P4R8-3|NFRKB;ENSG00000170322|ENST00000682444|NFRKB;nc|ENSG00000170322|Q6P4R8-2|NFRKB	nc|ENSG00000170322|Q6P4R8-3|NFRKB	nc|ENSG00000170322|Q6P4R8-3|NFRKB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.2908935546875	2	513.818941	1025.62333	-1.3066	-0.00067137	1.9584	0.0010063	0.65181	0.00033491	513.8187604987723	73.151	1.0162	69.755	69.349	70.366	-3.3961					39	20	3	0	0	0	0.027462	1	5607	5607		40.573	8.6178	1	95007			46219	7092	38289	38311	49669	49669					0.11154308748336916
QNIMEKLRIKY	11	Unmodified	_QNIMEKLRIKY_					0	0	0		SYNE2|p.E3636Q|1|0.36|ENSG00000054654|chr14:64075984-64075984|G/C|missense_variant	SYNE2|p.E3636Q|1|0.36|ENSG00000054654|chr14:64075984-64075984|G/C|missense_variant	SYNE2|p.E3636Q|1|0.36|ENSG00000054654|chr14:64075984-64075984|G/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.7937316894531	3	479.274511	1434.8017	0.045096	2.1613E-05	-3.8554	-0.0018478	-3.8103	-0.0018262	479.2726289068679	71.602	0.85059	71.602	71.15	72	0					25	20	2	0	0	0	0.025568	1	6886	6886		33.039	0	1	283960			46220	32938	38290	38312	49670	49670					0.10169610605044
QNIMMLIKE	9	Unmodified	_QNIMMLIKE_					0	0	0			REV__ENSG00000134516|ENST00000520908|DOCK2	REV__ENSG00000134516|ENST00000520908|DOCK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.2858276367188	2	560.29867	1118.58279	2.9377	0.001646	-2.4705	-0.0013842	0.46724	0.00026179	560.296988360046	106.44	0.44415	106.44	106.23	106.67	0					16	9	2	0	0	0	0.027402	1	11953	11953		76.774	9.2805	1	274710	+		46221	19210	38291	38313	49671	49671					0.02823883042037778
QNIQGVLLGP	10	Unmodified	_QNIQGVLLGP_					0	0	0			REV__ENST00000594962.5_1_19:17608063-17615347:+|nuORF	REV__ENST00000594962.5_1_19:17608063-17615347:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.3336181640625	2	519.800749	1037.58694	0.45057	0.0002342	-0.87209	-0.00045331	-0.42153	-0.00021911	519.8000341466911	66.685	0.69487	63.99	63.766	64.461	-2.6958					30	13	3	0	0	0	0.027021	1	5227	5227		15.642	0	1	100790	+		46222	18937	38292	38314	49672	49672					0.06965431851608628
QNIQMYMID	9	Unmodified	_QNIQMYMID_					0	0	0			REV__ENST00000413300.1_1_3:43759941-43759998:+|nuORF	REV__ENST00000413300.1_1_3:43759941-43759998:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.338623046875	2	578.262284	1154.51002	1.347	0.00077893	1.101	0.00063664	2.448	0.0014156	578.2628598234078	116.84	0.35753	116.84	116.68	117.04	0					10	7	2	0	0	0	0.027462	1	13389	13389		26.693	0	1	137520	+		46223	25509	38293	38315	49673	49673					-0.06105870751389375
QNISDTVAR	9	Unmodified	_QNISDTVAR_					0	0	0			REV__ENSG00000137076|ENST00000314888|TLN1	REV__ENSG00000137076|ENST00000314888|TLN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.3066711425781	2	502.261988	1002.50942	2.7823	0.0013974	-0.2739	-0.00013757	2.5084	0.0012599	502.76454748480086	99.215	0.20053	99.215	99.076	99.276	0					6	4	2	0	0	0	0.027462	1	10961	10961		15.642	0	1	118360	+		46224	19432	38294	38316	49674	49674					0.008267939154279702
QNISYFII	8	Unmodified	_QNISYFII_					0	0	0		tr|A0A7D6VTS2|A0A7D6VTS2_9CLOTNitroreductasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17965PE=3SV=1	tr|A0A7D6VTS2|A0A7D6VTS2_9CLOTNitroreductasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17965PE=3SV=1	tr|A0A7D6VTS2|A0A7D6VTS2_9CLOTNitroreductasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17965PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.7677001953125	2	499.271293	996.528032	-0.28104	-0.00014031	-3.5835	-0.0017891	-3.8645	-0.0019294	499.2693392928586	103.28	1.1032	101.84	101.55	102.66	-1.4347					32	20	2	0	0	0	0.028476	1	7225	7225		25.45	7.1258	1	308830			46225	35136	38295	38317	49675	49675					0.029629555572796562
QNKDFTIAVA	10	Unmodified	_QNKDFTIAVA_					0	0	0			REV__nc|ENSG00000111731|Q86YS7|C2CD5	REV__nc|ENSG00000111731|Q86YS7|C2CD5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.3250732421875	2	553.795663	1105.57677	-0.86069	-0.00047665	2.9515	0.0016345	2.0908	0.0011579	554.3009076570954	106.73	1.0465	104.85	104.54	105.59	-1.8785					40	19	4	0	0	0	0.026551	1	9708	9708		60.118	0	1	29263	+		46226	18056	38296	38318	49676	49676					0.028208241263882883
QNKDKKKKIL	10	Unmodified	_QNKDKKKKIL_					0	0	0			REV__L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|35|1|sense	REV__L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|35|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.5379333496094	3	414.934595	1241.78196	0.085954	3.5665E-05	-0.070439	-2.9228E-05	0.015514	6.4375E-06	414.93447270076075	37.779	0.44894	37.779	37.576	38.024	0					24	9	4	0	0	0	0.02698	1	2088	2088		27.644	0	1	219480	+		46227	28535	38297	38319	49677	49677					0.17073602656591902
QNKFATLL	8	Unmodified	_QNKFATLL_					0	0	0		ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.K2074Efs*10|1|0.06|ENSG00000183914|chr17:7786212-7786213|-/TGAGG|frameshift_variant	ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.7725830078125	2	467.77146	933.528367	0.86402	0.00040417	-1.1076	-0.00051808	-0.24353	-0.00011392	467.77078318123955	89.65	1.5432	87.075	86.413	87.956	-2.575					74	30	4	0	0	0	0.61436	1	7714	7714		60.972	3.1607	1	410380			46228	8123	38298	38320	49678	49678					0.05894375277148356
QNKFATLL	8	Unmodified	_QNKFATLL_					0	0	0		ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.K2074Efs*10|1|0.06|ENSG00000183914|chr17:7786212-7786213|-/TGAGG|frameshift_variant	ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	467.77146	933.528367	1.6198	0.0007577	-1.7337	-0.00081099	-0.11392	-5.3289E-05	467.77048082379446	88.355	1.4768	86.987	86.495	87.971	-1.3676	-0.023598	-0.00079807	NaN	60.972	73	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269340			46229	8123	38298	38320							0.05894375277148356
QNKFATLL	8	Unmodified	_QNKFATLL_					0	0	0		ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2;DNAH2|p.K2074Efs*10|1|0.06|ENSG00000183914|chr17:7786212-7786213|-/TGAGG|frameshift_variant	ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	467.77146	933.528367	-0.2905	-0.00013589	0.16695	7.8093E-05	-0.12355	-5.7795E-05	467.7713865567113	89.101	1.4924	86.97	86.461	87.954	-2.1309	-0.041066	0.00098011	NaN	60.972	77	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	478230			46230	8123	38298	38320							0.05894375277148356
QNKFLRRQ	8	Unmodified	_QNKFLRRQ_					0	0	0		ENST00000472637.5_1_3:112724385-112732818:-|nuORF;nc|ENSG00000163608|Q6NW34-2|NEPRO;ENSG00000163608|ENST00000314400|NEPRO;ENST00000474311.1_1_3:112724385-112727343:-|nuORF	ENST00000472637.5_1_3:112724385-112732818:-|nuORF	ENST00000472637.5_1_3:112724385-112732818:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	545.317138671875	2	545.317432	1088.62031	-2.8527	-0.0015556	1.4949	0.0008152	-1.3578	-0.00074042	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.75426	1	12006	12006		18.324	1.8513	1	337600			46231	6332	38299	38321	49679	49679					0.07954478414194455
QNKGLFTDIE	10	Unmodified	_QNKGLFTDIE_					0	0	0		tr|A0A553SMV6|A0A553SMV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23155PE=4SV=1	tr|A0A553SMV6|A0A553SMV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23155PE=4SV=1	tr|A0A553SMV6|A0A553SMV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23155PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	582.80224609375	2	582.798403	1163.58225	1.1315	0.00065944	3.8859	0.0022647	5.0174	0.0029241	582.8006818033648	147.53	6.6763	147.53	147.01	153.69	0					349	139	4	0	0	0	0.55359	1	17322	17322		47.657	3.2801	1	20317000			46232	33875	38300	38322	49680	49680					0.007005029181755162
QNKILYVF	8	Unmodified	_QNKILYVF_					0	0	0		ERAP2|p.A827Vfs*16|1|0.06|ENSG00000164308|chr5:96912761-96912762|-/T|frameshift_variant	ERAP2|p.A827Vfs*16|1|0.06|ENSG00000164308|chr5:96912761-96912762|-/T|frameshift_variant	ERAP2|p.A827Vfs*16|1|0.06|ENSG00000164308|chr5:96912761-96912762|-/T|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.62353515625	2	512.794935	1023.57532	-0.82217	-0.0004216	-3.7867	-0.0019418	-4.6089	-0.0023634	512.7928253910061	64.323	0.41168	64.323	64.091	64.503	0					22	9	3	0	0	0	0.028476	1	5827	5827		35.201	0	1	907900			46233	14313	38301	38323	49681	49681					0.0644723482827203
QNKLEESHN	9	Unmodified	_QNKLEESHN_					0	0	0			REV__tr|A0A553SFR9|A0A553SFR9_NIACISporegerminationproteinGerPEOS=NialliacirculansOX=1397GN=CEQ21_09390PE=4SV=1	REV__tr|A0A553SFR9|A0A553SFR9_NIACISporegerminationproteinGerPEOS=NialliacirculansOX=1397GN=CEQ21_09390PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	549.7650146484375	2	549.762352	1097.51015	0.74232	0.0004081	1.2312	0.00067687	1.9735	0.001085	549.7629575946962	154.06	4.3631	154.06	151.88	156.24	0					128	91	2	0	0	0	0.5811	1	17854	17854		34.173	0	1	70978	+		46234	29614	38302	38324	49682	49682					-0.034704114355236015
QNKLLIIK	8	Unmodified	_QNKLLIIK_					0	0	0		ENSG00000183354|ENST00000399933|KIAA2026	ENSG00000183354|ENST00000399933|KIAA2026	ENSG00000183354|ENST00000399933|KIAA2026	MULTI-MSMS	OvCa99_classI_Rep5	1	485.3260803222656	2	485.326402	968.638252	-0.62737	-0.00030448	0.5468	0.00026538	-0.080567	-3.9101E-05	485.3266010797201	37.919	0.95543	37.919	37.621	38.576	0					54	20	4	0	0	0	0.67745	1	2136	2136		47.916	0	1	2717900			46235	8070	38303	38325	49683	49683					0.1526780061633417
QNKNLFGFF	9	Unmodified	_QNKNLFGFF_					0	0	0		nc|ENSG00000164244|Q96M27-5|PRRC1	nc|ENSG00000164244|Q96M27-5|PRRC1	nc|ENSG00000164244|Q96M27-5|PRRC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.3196411132812	2	557.787641	1113.56073	0.77555	0.00043259	2.6809	0.0014954	3.4564	0.001928	558.2899485434394	59.298	0.69815	55.906	55.451	56.149	-3.392					15	13	2	0	0	0	0.027462	1	3923	3923		40.573	7.7602	1	28922			46236	15143	38304	38326	49684	49684					0.00849162680151494
QNKNLFGFF	9	Unmodified	_QNKNLFGFF_					0	0	0		nc|ENSG00000164244|Q96M27-5|PRRC1	nc|ENSG00000164244|Q96M27-5|PRRC1	nc|ENSG00000164244|Q96M27-5|PRRC1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	557.787641	1113.56073	0.15166	8.4594E-05	2.123	0.0011842	2.2747	0.0012688	557.788847298572	58.764	1.1759	55.983	55.487	56.662	-2.7801	0.038591	-0.0002141	NaN	40.573	28	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16695			46237	15143	38304	38326							0.00849162680151494
QNKRMLLKK	9	Unmodified	_QNKRMLLKK_					0	0	0		ENST00000411698.6_1_12:68720603-68720753:-|nuORF	ENST00000411698.6_1_12:68720603-68720753:-|nuORF	ENST00000411698.6_1_12:68720603-68720753:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.3176879882812	2	579.860618	1157.70668	1.3872	0.00080436	-2.6448	-0.0015336	-1.2577	-0.00072928	579.8590358301857	93.784	0.29242	93.784	93.59	93.883	0					9	6	2	0	0	0	0.027462	1	10196	10196		37.159	19.794	1	181250			46238	11543	38305	38327	49685	49685					0.13413721924507627
QNKSHSASKT	10	Unmodified	_QNKSHSASKT_					0	0	0		ENSG00000119720|ENST00000354366|NRDE2;ENST00000555903.1_1_14:90745249-90755225:-|nuORF	ENSG00000119720|ENST00000354366|NRDE2	ENSG00000119720|ENST00000354366|NRDE2	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8206176757812	2	544.278169	1086.54179	0.41838	0.00022771	4.3287	0.002356	4.7471	0.0025837	544.2805155340757	74.087	0.4213	74.087	73.945	74.366	0					20	10	2	0	0	0	0.026826	1	7297	7297		36.447	0	1	951610			46239	3391	38306	38328	49686	49686					0.001975813184344588
QNKSPLKRA	9	Unmodified	_QNKSPLKRA_					0	0	0			REV__ENST00000555004.2_3_14:96554171-96554918:+|nuORF	REV__ENST00000555004.2_3_14:96554171-96554918:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.3104858398438	2	521.311815	1040.60908	-1.2714	-0.00066281	0.93657	0.00048825	-0.33485	-0.00017456	521.312568518621	53.818	0.35884	50.57	50.415	50.774	-3.2474					9	6	2	0	0	0	0.027343	1	3296	3296		79.451	10.966	1	17511	+		46240	27538	38307	38329	49687	49687					0.09039656320032918
QNKVDLIIL	9	Unmodified	_QNKVDLIIL_					0	0	0		tr|A0A7D6ZSA1|A0A7D6ZSA1_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_15000PE=4SV=1	tr|A0A7D6ZSA1|A0A7D6ZSA1_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_15000PE=4SV=1	tr|A0A7D6ZSA1|A0A7D6ZSA1_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_15000PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.306640625	2	528.326599	1054.63865	0.026709	1.4111E-05	-0.1656	-8.749E-05	-0.13889	-7.3378E-05	528.3267570450693	104.75	0.77801	103.4	102.9	103.68	-1.3482					25	14	3	0	0	0	0.027447	1	7328	7328		31.53	0	1	201930			46241	35733	38308	38330	49688	49688					0.11351175545541992
QNKVFIDLI	9	Unmodified	_QNKVFIDLI_					0	0	0			REV__L1MA6_dup4553|chr14:32965001-32966588:+|1.0811544242595916|0.0860524180403581|3.65|423.0|76|2|anti-sense	REV__L1MA6_dup4553|chr14:32965001-32966588:+|1.0811544242595916|0.0860524180403581|3.65|423.0|76|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3167724609375	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.63422	1	14129	14129		27.882	0	1	202430	+		46242	28403	38309	38331	49689	49689					0.08222889028479585
QNKVPVVFHVV	11	Unmodified	_QNKVPVVFHVV_					0	0	0			REV__ENSG00000139044|ENST00000266383|B4GALNT3	REV__ENSG00000139044|ENST00000266383|B4GALNT3	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3699951171875	2	633.371872	1264.72919	-4.1446	-0.0026251	-0.18183	-0.00011517	-4.3265	-0.0027403	633.3716506579397	149.94	3.0119	148.99	147.85	150.86	-0.9512					218	59	5	0	0	0	0.70865	1	12733	12733		26.693	2.1737	1	281260	+		46243	19585	38310	38332	49690	49690					0.1074164459378153
QNLHFFYL	8	Unmodified	_QNLHFFYL_					0	0	0		ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L;ENST00000515088.5_1_4:169391961-169393850:-|nuORF;ENSG00000137628|ENST00000393743|DDX60;DDX60|p.L860Qfs*23|1|0.12|ENSG00000137628|chr4:168272134-168272135|-/AACTT|frameshift_variant;DDX60L|p.R1229Pfs*17|1|0.04|ENSG00000181381|chr4:168394589-168394590|-/GAAGAGTAAAGGGTTATGACCAG|frameshift_variant	ENSG00000181381|ENST00000682922|DDX60L;ENSG00000137628|ENST00000393743|DDX60;DDX60L|p.R1229Pfs*17|1|0.04|ENSG00000181381|chr4:168394589-168394590|-/GAAGAGTAAAGGGTTATGACCAG|frameshift_variant	DDX60L|p.R1229Pfs*17|1|0.04|ENSG00000181381|chr4:168394589-168394590|-/GAAGAGTAAAGGGTTATGACCAG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.663818359375	2	541.276909	1080.53927	-1.0879	-0.00058887	4.2417	0.0022959	3.1537	0.001707	541.2802159542499	93.938	1.3012	91.431	91.171	92.472	-2.5072					42	24	4	0	0	0	0.028476	1	8316	8316		44.531	0	1	94438			46244	7929;725;4602	38311	38333	49691	49691					0.0022177765142714634
QNLIIGLLT	9	Unmodified	_QNLIIGLLT_					0	0	0		tr|A0A553STF0|A0A553STF0_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_04925PE=4SV=1	tr|A0A553STF0|A0A553STF0_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_04925PE=4SV=1	tr|A0A553STF0|A0A553STF0_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_04925PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.76953125	2	492.808042	983.601532	1.8933	0.00093304	0.20279	9.9934E-05	2.0961	0.001033	492.8080054019026	100.19	0.46091	100.19	100.03	100.49	0					14	10	2	0	0	0	0.027448	1	11119	11119		27.882	0	1	362700			46245	34481	38312	38334	49692	49692					0.10907503999737855
QNLIKRDP	8	Unmodified	_QNLIKRDP_					0	0	0		SDAD1|p.F439Lfs*23|1|0.1|ENSG00000198301|chr4:75961070-75961071|-/TCCAATCATAAATCCTGTTAAC|frameshift_variant;ENSG00000198301|ENST00000356260|SDAD1;ENST00000504975.1_1_4:76911880-76912009:-|nuORF	SDAD1|p.F439Lfs*23|1|0.1|ENSG00000198301|chr4:75961070-75961071|-/TCCAATCATAAATCCTGTTAAC|frameshift_variant	SDAD1|p.F439Lfs*23|1|0.1|ENSG00000198301|chr4:75961070-75961071|-/TCCAATCATAAATCCTGTTAAC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.3227233886719	2	492.285266	982.555979	-0.63956	-0.00031485	0.88756	0.00043693	0.24799	0.00012208	492.2854856047326	54.782	0.60053	54.782	54.422	55.023	0					32	13	3	0	0	0	0.028476	1	4469	4469		23.042	0	1	981240			46246	8805	38313	38335	49693	49693					0.06400278537364557
QNLIKYYH	8	Unmodified	_QNLIKYYH_					0	0	0		ASAP1|p.K992Qfs*25|1|0.06|ENSG00000153317|chr8:130060797-130060798|-/G|frameshift_variant;ENSG00000153317|ENST00000518721|ASAP1;nc|ENSG00000153317|Q9ULH1-2|ASAP1;ENST00000519169.5_1_8:131191508-131249207:-|nuORF	ASAP1|p.K992Qfs*25|1|0.06|ENSG00000153317|chr8:130060797-130060798|-/G|frameshift_variant	ASAP1|p.K992Qfs*25|1|0.06|ENSG00000153317|chr8:130060797-130060798|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.7725830078125	2	539.787641	1077.56073	0.40693	0.00021966	3.6823	0.0019876	4.0892	0.0022073	539.7889948801561	98.376	1.4358	96.616	95.913	97.349	-1.7595					35	27	2	0	0	0	0.028476	1	6589	6589		46.766	11.148	1	25363			46247	118	38314	38336	49694	49694					0.02505162680131434
QNLILIQL	8	Unmodified	_QNLILIQL_					0	0	0			REV__ENSG00000187554|ENST00000642603|TLR5	REV__ENSG00000187554|ENST00000642603|TLR5	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.2822570800781	2	477.80276	953.590967	0.23965	0.0001145	-1.6574	-0.0007919	-1.4177	-0.0006774	477.80244569291426	81.683	0.88064	80.035	79.767	80.648	-1.6485					25	16	2	0	0	0	0.028476	1	6943	6943		45.952	15.448	1	27846	+		46248	22645	38315	38337	49695	49695					0.11231521345325746
QNLILRWA	8	Unmodified	_QNLILRWA_					0	0	0			REV__ENST00000320241.4_1_16:86614428-86614788:+|nuORF	REV__ENST00000320241.4_1_16:86614428-86614788:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.35089111328125	2	507.298176	1012.5818	2.2392	0.001136	-1.3343	-0.00067688	0.90494	0.00045908	507.2970492665505	93.929	0.54555	93.929	93.59	94.136	0					25	12	3	0	0	0	0.028476	1	10189	10189		33.516	8.0654	1	1091900	+		46249	24438	38316	38338	49696	49696					0.07601172779641274
QNLKKILA	8	Unmodified	_QNLKKILA_					0	0	0			REV__ENSG00000126602|ENST00000246957|TRAP1	REV__ENSG00000126602|ENST00000246957|TRAP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.2760314941406	2	464.302927	926.591301	0.58369	0.00027101	-0.51384	-0.00023858	0.069847	3.243E-05	464.3024550062387	63.358	0.46832	63.358	63.179	63.648	0					16	11	2	0	0	0	0.028476	1	5731	5731		18.324	0	1	169170	+		46250	18790	38317	38339	49697	49697					0.1250694106516903
QNLLFGSLI	9	Unmodified	_QNLLFGSLI_					0	0	0		ENSG00000115616|ENST00000233969|SLC9A2;SLC9A4|p.F354Sfs*2|4|0.34|ENSG00000180251|chr2:102505332-102505332|C/-|frameshift_variant;SLC9A4|p.V464Lfs*42|1|0.13|ENSG00000180251|chr2:102508269-102508270|-/CTACCTGGGATAGACAATCATGG|frameshift_variant;ENSG00000180251|ENST00000295269|SLC9A4	ENSG00000115616|ENST00000233969|SLC9A2;ENSG00000180251|ENST00000295269|SLC9A4	ENSG00000115616|ENST00000233969|SLC9A2	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.7914733886719	2	502.792392	1003.57023	-0.61586	-0.00030965	-1.015	-0.00051033	-1.6309	-0.00081998	502.7920458710678	104.69	0.54858	104.69	104.36	104.91	0					19	12	2	0	0	0	0.027441	1	11768	11768		49.442	5.3247	1	435190			46251	3114;7864	38318	38340	49698	49698					0.06858930965665877
QNLLFVMKR	9	Unmodified	_QNLLFVMKR_					0	0	0		nc|ENSG00000041515|Q9Y6X6-3|MYO16;nc|ENSG00000041515|Q9Y6X6-4|MYO16	nc|ENSG00000041515|Q9Y6X6-3|MYO16	nc|ENSG00000041515|Q9Y6X6-3|MYO16	MULTI-MSMS	OvCa9_classI_Rep2	2	574.8367919921875	2	574.834069	1147.65358	0.90555	0.00052054	4.2517	0.002444	5.1573	0.0029646	574.8365086671698	89.906	5.8582	88.604	88.285	94.143	-1.302					235	114	5	0	0	0	0.53957	1	7967	7967		38.806	1.647	1	3839600			46252	14870	38319	38341	49699	49699					0.0856634414187738
QNLLHIRAVGT	11	Unmodified	_QNLLHIRAVGT_					0	0	0		ENST00000479084.1_1_1:156264456-156264780:-|nuORF;ENSG00000198715|ENST00000362007|GLMP	ENST00000479084.1_1_1:156264456-156264780:-|nuORF	ENST00000479084.1_1_1:156264456-156264780:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3557739257812	2	611.356754	1220.69895	-3.1571	-0.0019301	2.0725	0.001267	-1.0847	-0.00066312	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.72485	1	12935	12935		17.468	2.6031	1	666990			46253	8853	38320	38342	49700	49700					0.09743285928561818
QNLLLPVLR	9	Unmodified	_QNLLLPVLR_					0	0	0			REV__ENSG00000000457|ENST00000367771|SCYL3	REV__ENSG00000000457|ENST00000367771|SCYL3	MULTI-MSMS	OvCa9_classI_Rep2	2	533.3399047851562	2	533.342584	1064.67061	-5.4005	-0.0028803	1.293	0.00068962	-4.1075	-0.0021907	533.3431631989303	156.44	1.0857	156.21	155.92	157	-0.22696					71	26	4	0	0	0	0.6653	1	15914	15914		24.203	2.2429	1	260540	+		46254	16357	38321	38343	49701	49701					0.14086588019290502
QNLLQHVI	8	Unmodified	_QNLLQHVI_					0	0	0		ENST00000474289.6_1_6:127611417-127636024:-|nuORF	ENST00000474289.6_1_6:127611417-127636024:-|nuORF	ENST00000474289.6_1_6:127611417-127636024:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	482.7846374511719	2	482.782359	963.550165	1.1629	0.00056142	2.6735	0.0012907	3.8364	0.0018521	482.7834710585416	120.81	2.5422	119.78	119.46	122	-1.0271					114	48	4	0	0	0	0.69415	1	9233	9233		44.531	5.5096	1	731330			46255	12429	38322	38344	49702	49702					0.06693180025706624
QNLLQLFDI	9	Unmodified	_QNLLQLFDI_					0	0	0		ENSG00000152822|ENST00000282753|GRM1;ENST00000507005.1_1_6:146350692-146480734:+|nuORF;nc|ENSG00000152822|Q13255-2|GRM1;nc|ENSG00000152822|Q13255-3|GRM1	ENSG00000152822|ENST00000282753|GRM1	ENSG00000152822|ENST00000282753|GRM1	MULTI-SECPEP	OvCa9_classI_Rep3	3	553.28515625	2	552.308406	1102.60226	-0.39115	-0.00021603	0.51235	0.00028298	0.1212	6.6942E-05	552.3083693662329	110.01	0.78709	108.86	108.56	109.35	-1.1444					24	14	2	0	0	0	0.027418	1	7897	7897		68.787	4.5796	1	27429			46256	5648	38323	38345	49703	49703					0.05506298648788288
QNLMLMINI	9	Unmodified	_QNLMLMINI_					0	0	0			REV__tr|A0A7D6VUY4|A0A7D6VUY4_9CLOTTransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_22280PE=4SV=1	REV__tr|A0A7D6VUY4|A0A7D6VUY4_9CLOTTransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_22280PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.8331909179688	2	545.293388	1088.57222	0.47455	0.00025877	4.1056	0.0022388	4.5802	0.0024976	545.2956139455246	74.161	0.65134	74.161	73.945	74.596	0					30	16	2	0	0	0	0.027448	1	7385	7385		53.351	0	1	536440	+		46257	31700	38324	38346	49704	49704					0.03147900387602931
QNLNLQQFV	9	Unmodified	_QNLNLQQFV_					0	0	0		nc|ENSG00000143190|P14859-4|POU2F1;ENST00000470928.3_1_1:167334720-167353117:+|nuORF;ENST00000560232.6_1_1:167301714-167356435:+|nuORF;nc|ENSG00000143190|P14859-5|POU2F1;nc|ENSG00000143190|P14859-3|POU2F1;nc|ENSG00000143190|P14859|POU2F1;nc|ENSG00000143190|P14859-2|POU2F1;ENSG00000143190|ENST00000367866|POU2F1	nc|ENSG00000143190|P14859-4|POU2F1;nc|ENSG00000143190|P14859-5|POU2F1	nc|ENSG00000143190|P14859-5|POU2F1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.9805297851562	2	552.29583	1102.57711	-0.40221	-0.00022214	2.317	0.0012797	1.9148	0.0010575	552.2971225878541	39.979	0.96376	37.025	36.616	37.58	-2.9541					30	18	2	0	0	0	0.027462	1	1714	1714		16.473	2.336	1	43590			46258	15072;5018	38325	38347	49705	49705					0.029922438462335776
QNLNSLGLLV	10	Unmodified	_QNLNSLGLLV_					0	0	0			REV__tr|A0A7D6VMM6|A0A7D6VMM6_9CLOTRadicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15980PE=4SV=1	REV__tr|A0A7D6VMM6|A0A7D6VMM6_9CLOTRadicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15980PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.8121337890625	2	535.813856	1069.61316	-1.1125	-0.00059609	0.90544	0.00048515	-0.20706	-0.00011095	535.8143919709725	105	1.1557	102.89	102.59	103.75	-2.1117					46	22	3	0	0	0	0.45822	1	9516	9516		60.118	8.9256	1	247100	+		46259	31138	38326	38348	49706	49706					0.08113701023080466
QNLNSLGLLV	10	Unmodified	_QNLNSLGLLV_					0	0	0			REV__tr|A0A7D6VMM6|A0A7D6VMM6_9CLOTRadicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15980PE=4SV=1	REV__tr|A0A7D6VMM6|A0A7D6VMM6_9CLOTRadicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15980PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	535.813856	1069.61316	-1.6583	-0.00088854	1.4	0.00075014	-0.2583	-0.0001384	535.814667153231	103.53	1.0384	102.85	102.62	103.66	-0.68459	-0.028285	0.00065729	NaN	60.118	47	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196110	+		46260	31138	38326	38348							0.08113701023080466
QNLNSLGLLV	10	Unmodified	_QNLNSLGLLV_					0	0	0			REV__tr|A0A7D6VMM6|A0A7D6VMM6_9CLOTRadicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15980PE=4SV=1	REV__tr|A0A7D6VMM6|A0A7D6VMM6_9CLOTRadicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15980PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	535.813856	1069.61316	1.3421	0.0007191	-0.88086	-0.00047198	0.46121	0.00024712	535.8131303962025	104.32	1.1438	102.89	102.6	103.75	-1.4347	0.016435	-0.0017869	NaN	60.118	61	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249120	+		46261	31138	38326	38348							0.08113701023080466
QNLNSLGLLV	10	Unmodified	_QNLNSLGLLV_					0	0	0			REV__tr|A0A7D6VMM6|A0A7D6VMM6_9CLOTRadicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15980PE=4SV=1	REV__tr|A0A7D6VMM6|A0A7D6VMM6_9CLOTRadicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15980PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	535.813856	1069.61316	-1.1125	-0.00059609	0.90544	0.00048515	-0.20706	-0.00011095	535.8143919709725	105	1.1557	102.89	102.59	103.75	-2.1117	0.01185	0.0001273	NaN	60.118	46	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247100	+		46262	31138	38326	38348							0.08113701023080466
QNLPAAET	8	Unmodified	_QNLPAAET_					0	0	0		ENSG00000176774|ENST00000325250|MAGEB18	ENSG00000176774|ENST00000325250|MAGEB18	ENSG00000176774|ENST00000325250|MAGEB18	MULTI-SECPEP	OvCa9_classI_Rep4_	4	423.206787109375	2	422.213975	842.413397	-0.93189	-0.00039346	1.0877	0.00045925	0.15583	6.5794E-05	422.2144056405741	52.93	1.1561	49.722	49.451	50.607	-3.208					42	22	3	0	0	0	0.028476	1	3182	3182		31.955	1.4512	1	107160			46263	7628	38327	38349	49707	49707					-0.01411353924663672
QNLRVDTTLL	10	Unmodified	_QNLRVDTTLL_					0	0	0		ENSG00000198720|ENST00000394859|ANKRD13B;ENST00000578943.1_1_17:27935867-27936402:+|nuORF;nc|ENSG00000198720|Q86YJ7-2|ANKRD13B;ENST00000487527.5_1_17:27916841-27940597:+|nuORF	ENSG00000198720|ENST00000394859|ANKRD13B	ENSG00000198720|ENST00000394859|ANKRD13B	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.8349609375	2	586.83532	1171.65609	-1.2922	-0.0007583	0.87369	0.00051271	-0.41849	-0.00024558	586.835730888459	92.749	1.355	90.242	89.857	91.212	-2.5072					84	27	4	0	0	0	0.42962	1	8072	8072		64.207	0	1	840080			46264	8855	38328	38350	49708	49708					0.07712471080526484
QNLSCSAD	8	Unmodified	_QNLSCSAD_					0	0	0			REV__nc|ENSG00000219481|Q3BBV0|NBPF1	REV__nc|ENSG00000219481|Q3BBV0|NBPF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	418.1756591796875	2	419.173992	836.333432	0.4661	0.00019538	-2.2298	-0.00093468	-1.7637	-0.00073931	419.1728879789035	31.981	0.24801	31.981	31.857	32.105	0					6	4	2	0	0	0	0.028476	1	1357	1357		30.504	0	1	17096	+		46265	23333	38329	38351	49709	49709					-0.09128163590173699
QNLSLRLLT	9	Unmodified	_QNLSLRLLT_					0	0	0		ENST00000395825.3_1_17:16471178-16472431:-|nuORF;ENST00000395824.5_1_17:16471178-16472262:-|nuORF	ENST00000395825.3_1_17:16471178-16472431:-|nuORF	ENST00000395825.3_1_17:16471178-16472431:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.3070068359375	2	529.321848	1056.62914	-0.54102	-0.00028638	0.12195	6.4552E-05	-0.41907	-0.00022182	529.3217657423254	54.74	0.73013	54.74	54.334	55.064	0					28	16	2	0	0	0	0.027441	1	4452	4452		40.778	0	1	1046100			46266	11302	38330	38352	49710	49710					0.10309407259978798
QNLTLYNL	8	Unmodified	_QNLTLYNL_					0	0	0		sp|Q6SWD1|RL11_HCMVMMembraneglycoproteinRL11OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL11PE=3SV=1;sp|P16809|IR11_HCMVAViralFc-gammareceptor-likeproteinIR11OS=Humancytomegalovirus(strainAD169)OX=10360PE=3SV=1	sp|Q6SWD1|RL11_HCMVMMembraneglycoproteinRL11OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL11PE=3SV=1	sp|Q6SWD1|RL11_HCMVMMembraneglycoproteinRL11OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL11PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.24932861328125	2	489.766374	977.518196	-0.64083	-0.00031386	-2.15	-0.001053	-2.7908	-0.0013669	489.7661945504455	54.947	0.43185	54.947	54.718	55.15	0					21	9	3	0	0	0	0.028476	1	4483	4483		21.96	0	1	451390			46267	32902	38331	38353	49711	49711					0.028537675519032746
QNLVAWIE	8	Unmodified	_QNLVAWIE_					0	0	0			REV__nc|ENSG00000163629|Q12923-2|PTPN13	REV__nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-MSMS	OvCa99_classI_Rep5	1	486.759521484375	2	486.761092	971.507631	-0.50948	-0.000248	-2.116	-0.00103	-2.6255	-0.001278	486.75981705214434	38.803	0.79959	38.803	38.576	39.376	0					38	17	4	0	0	0	0.73288	1	2240	2240		35.201	2.3883	1	487630	+		46268	20865	38332	38354	49712	49712					0.020737848974590634
QNLVVFHIP	9	Unmodified	_QNLVVFHIP_					0	0	0			REV__ENSG00000108510|ENST00000397786|MED13	REV__ENSG00000108510|ENST00000397786|MED13	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.2610473632812	2	533.805834	1065.59712	1.6304	0.00087034	-1.878	-0.0010025	-0.24757	-0.00013215	533.804826910331	107.06	0.62979	107.06	106.89	107.52	0					23	14	2	0	0	0	0.027462	1	12108	12108		31.955	5.2619	1	438910	+		46269	17893	38333	38355	49713	49713					0.06694039576859723
QNMLCGDVQ	9	Unmodified	_QNMLCGDVQ_					0	0	0		tr|A0A7D6ZHR9|A0A7D6ZHR9_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04000PE=3SV=1	tr|A0A7D6ZHR9|A0A7D6ZHR9_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04000PE=3SV=1	tr|A0A7D6ZHR9|A0A7D6ZHR9_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04000PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.8310852050781	2	504.217877	1006.4212	-0.13345	-6.7286E-05	-1.3658	-0.00068864	-1.4992	-0.00075592	504.21744251641485	58.603	0.20935	58.603	58.446	58.655	0					7	4	2	0	0	0	0.027462	1	4979	4979		37.812	0	1	113010			46270	35587	38334	38356	49714	49714					-0.08175285991046621
QNMLDAVVK	9	Unmodified	_QNMLDAVVK_					0	0	0			REV__nc|ENSG00000163808|Q9NS87-2|KIF15	REV__nc|ENSG00000163808|Q9NS87-2|KIF15	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7765808105469	2	509.273509	1016.53247	0.90018	0.00045844	1.1259	0.00057337	2.026	0.0010318	509.77208304590226	81.034	0.58616	81.034	80.786	81.372	0					38	13	4	0	0	0	0.027462	1	8327	8327		27.882	0	1	926990	+		46271	20892	38335	38357	49715	49715					0.024860967085487573
QNMLEQLLI	9	Unmodified	_QNMLEQLLI_					0	0	0		ENST00000477396.5_1_9:135749797-135753642:-|nuORF;ENSG00000165695|ENST00000298545|AK8	ENST00000477396.5_1_9:135749797-135753642:-|nuORF	ENST00000477396.5_1_9:135749797-135753642:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.2784423828125	2	551.302267	1100.58998	0.51764	0.00028537	-3.4456	-0.0018996	-2.928	-0.0016142	551.3002061250041	113.86	1.422	112.41	112.15	113.57	-1.4461					74	27	4	0	0	0	0.027453	1	10673	10673		45.972	0	1	129250			46272	6593	38336	38358	49716	49716					0.043709389141440624
QNMMVVFLK	9	Unmodified	_QNMMVVFLK_					0	0	0		tr|A0A553SIU5|A0A553SIU5_NIACIGlycosyltransferasefamily2proteinOS=NialliacirculansOX=1397GN=CEQ21_15495PE=3SV=1	tr|A0A553SIU5|A0A553SIU5_NIACIGlycosyltransferasefamily2proteinOS=NialliacirculansOX=1397GN=CEQ21_15495PE=3SV=1	tr|A0A553SIU5|A0A553SIU5_NIACIGlycosyltransferasefamily2proteinOS=NialliacirculansOX=1397GN=CEQ21_15495PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.828125	2	555.29593	1108.57731	-0.28558	-0.00015858	-0.99581	-0.00055297	-1.2814	-0.00071155	555.2953617989174	49.186	0.38725	49.186	48.986	49.373	0					15	8	2	0	0	0	0.027462	1	3667	3667		17.365	0	1	673510			46273	33426	38337	38359	49717	49717					0.027362042502090844
QNMPELTW	8	Unmodified	_QNMPELTW_					0	0	0		tr|A0A553SFY3|A0A553SFY3_NIACIMagnesiumtransportproteinCorAOS=NialliacirculansOX=1397GN=corAPE=3SV=1	tr|A0A553SFY3|A0A553SFY3_NIACIMagnesiumtransportproteinCorAOS=NialliacirculansOX=1397GN=corAPE=3SV=1	tr|A0A553SFY3|A0A553SFY3_NIACIMagnesiumtransportproteinCorAOS=NialliacirculansOX=1397GN=corAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.28125	2	509.73676	1017.45897	-0.38091	-0.00019417	2.5415	0.0012955	2.1606	0.0011013	510.2400916189717	62.395	0.54387	58.937	58.715	59.259	-3.4577					16	10	2	0	0	0	0.028476	1	4359	4359		20.482	0.48506	1	62695			46274	33093	38338	38360	49718	49718					-0.04906451733938866
QNNIIVQRI	9	Unmodified	_QNNIIVQRI_					0	0	0			REV__ENSG00000188107|ENST00000503581|EYS	REV__ENSG00000188107|ENST00000503581|EYS	MULTI-MSMS	OvCa99_classI_Rep5	1	549.3241577148438	2	549.324922	1096.63529	-0.099564	-5.4693E-05	0.28755	0.00015796	0.18799	0.00010327	549.3249522158815	31.381	0.78766	31.381	31.218	32.006	0					33	15	4	0	0	0	0.36502	1	1282	1282		55.504	2.1528	1	802870	+		46275	22690	38339	38361	49719	49719					0.0908392549151813
QNNLIPACK	9	Unmodified	_QNNLIPACK_					0	0	0		tr|A0A7D6ZIM1|A0A7D6ZIM1_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07615PE=3SV=1	tr|A0A7D6ZIM1|A0A7D6ZIM1_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07615PE=3SV=1	tr|A0A7D6ZIM1|A0A7D6ZIM1_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07615PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.8105163574219	2	500.765852	999.51715	-0.86671	-0.00043402	0.69044	0.00034575	-0.17627	-8.827E-05	500.7664196038801	58.783	0.65343	56.003	55.588	56.241	-2.7801					20	12	3	0	0	0	0.027433	1	4266	4266		71.296	26.919	1	20881			46276	35621	38340	38362	49720	49720					0.01737229911339
QNNNLNIIID	10	Unmodified	_QNNNLNIIID_					0	0	0		tr|A0A7D6VUB0|A0A7D6VUB0_9CLOTSulfide/dihydroorotatedehydrogenase-likeFAD/NAD-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10925PE=4SV=1	tr|A0A7D6VUB0|A0A7D6VUB0_9CLOTSulfide/dihydroorotatedehydrogenase-likeFAD/NAD-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10925PE=4SV=1	tr|A0A7D6VUB0|A0A7D6VUB0_9CLOTSulfide/dihydroorotatedehydrogenase-likeFAD/NAD-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10925PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.8240966796875	2	585.809302	1169.60405	-1.2765	-0.00074778	1.3106	0.00076775	0.034086	1.9968E-05	585.8111766600107	104.5	0.59187	104.5	104.28	104.87	0					34	13	4	0	0	0	0.026849	1	11683	11683		25.574	1.0549	1	809780			46277	35174	38341	38363	49721	49721					0.026033076667545174
QNNNLNIIID	10	Unmodified	_QNNNLNIIID_					0	0	0		tr|A0A7D6VUB0|A0A7D6VUB0_9CLOTSulfide/dihydroorotatedehydrogenase-likeFAD/NAD-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10925PE=4SV=1	tr|A0A7D6VUB0|A0A7D6VUB0_9CLOTSulfide/dihydroorotatedehydrogenase-likeFAD/NAD-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10925PE=4SV=1	tr|A0A7D6VUB0|A0A7D6VUB0_9CLOTSulfide/dihydroorotatedehydrogenase-likeFAD/NAD-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10925PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	585.809302	1169.60405	-0.71301	-0.00041769	3.9147	0.0022933	3.2017	0.0018756	585.8116001424029	104.86	0.98845	104.28	103.92	104.91	-0.57639	-0.06356	0.00045919	NaN	25.574	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37332			46278	35174	38341	38363							0.026033076667545174
QNNNLNIIID	10	Unmodified	_QNNNLNIIID_					0	0	0		tr|A0A7D6VUB0|A0A7D6VUB0_9CLOTSulfide/dihydroorotatedehydrogenase-likeFAD/NAD-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10925PE=4SV=1	tr|A0A7D6VUB0|A0A7D6VUB0_9CLOTSulfide/dihydroorotatedehydrogenase-likeFAD/NAD-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10925PE=4SV=1	tr|A0A7D6VUB0|A0A7D6VUB0_9CLOTSulfide/dihydroorotatedehydrogenase-likeFAD/NAD-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10925PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	585.809302	1169.60405	-0.99003	-0.00057997	4.3242	0.0025332	3.3342	0.0019532	585.8113051144906	105.6	0.62366	104.25	103.99	104.61	-1.3482	-0.091673	0.000939	NaN	25.574	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54412			46279	35174	38341	38363							0.026033076667545174
QNNPGEEVT	9	Unmodified	_QNNPGEEVT_					0	0	0		ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	ENSG00000134697|ENST00000373062|GNL2	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.25921630859375	2	494.222528	986.430503	0.64694	0.00031973	-0.85515	-0.00042264	-0.20822	-0.00010291	494.2220735608966	40.788	0.7874	38.078	37.848	38.635	-2.7097					20	15	2	0	0	0	0.027462	1	2131	2131		32.812	24.581	1	25777			46280	4319	38342	38364	49722	49722					-0.06325478109511096
QNNQLAQAVL	10	Unmodified	_QNNQLAQAVL_					0	0	0			REV__tr|A0A553STR7|A0A553STR7_NIACICytoplasmicproteinOS=NialliacirculansOX=1397GN=CEQ21_05630PE=4SV=1	REV__tr|A0A553STR7|A0A553STR7_NIACICytoplasmicproteinOS=NialliacirculansOX=1397GN=CEQ21_05630PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	550.327392578125	2	549.798737	1097.58292	-1.4747	-0.00081078	-1.5503	-0.00085233	-3.0249	-0.0016631	550.2993779020745	86.987	1.1687	84.81	84.33	85.499	-2.1768					63	22	4	0	0	0	0.026734	1	5155	5155		47.657	4.0065	1	122430	+		46281	31002	38343	38365	49723	49723					0.03803342357878137
QNNQMPPLL	9	Unmodified	_QNNQMPPLL_					0	0	0			REV__ENSG00000170677|ENST00000397942|SOCS6	REV__ENSG00000170677|ENST00000397942|SOCS6	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3082885742188	2	527.771134	1053.52771	2.2646	0.0011952	-2.3414	-0.0012357	-0.076843	-4.0556E-05	527.7694015493213	94	0.25344	94	93.841	94.094	0					8	5	2	0	0	0	0.027462	1	10228	10228		42.474	19.432	1	196740	+		46282	21556	38344	38366	49724	49724					0.003092125657985889
QNNVLIPSL	9	Unmodified	_QNNVLIPSL_					0	0	0		tr|A0A553SKB4|A0A553SKB4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_18305PE=4SV=1	tr|A0A553SKB4|A0A553SKB4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_18305PE=4SV=1	tr|A0A553SKB4|A0A553SKB4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_18305PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	499.2867126464844	2	499.287474	996.560395	1.2353	0.00061678	-1.6971	-0.00084736	-0.46184	-0.00023059	499.286546654287	90.683	2.2781	89.381	88.929	91.207	-1.302					112	43	4	0	0	0	0.19758	1	8032	8032		76.774	7.1465	1	1027100			46283	33597	38345	38367	49725	49725					0.06197742960296182
QNPFLLPSL	9	Unmodified	_QNPFLLPSL_					0	0	0			REV__ENST00000398637.9_1_12:46581311-46581524:-|nuORF	REV__ENST00000398637.9_1_12:46581311-46581524:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.7908325195312	2	514.792392	1027.57023	-2.2876	-0.0011776	-1.5773	-0.000812	-3.8649	-0.0019896	514.7912900354381	88.358	1.694	85.756	85.228	86.922	-2.6027					57	33	2	0	0	0	0.27001	1	7539	7539		66.429	0	1	454230	+		46284	25379	38346	38368	49726	49726					0.057549309656678815
QNPMLIELR	9	Unmodified	_QNPMLIELR_					0	0	0			REV__ENST00000519396.5_1_8:67716630-67743514:+|nuORF	REV__ENST00000519396.5_1_8:67716630-67743514:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	557.309326171875	2	557.307884	1112.60121	-0.13866	-7.7275E-05	-2.9808	-0.0016612	-3.1194	-0.0017385	557.3060910301361	38.64	0.80201	38.64	38.44	39.242	0					50	17	5	0	0	0	0.17606	1	2200	2200		80.455	7.5754	1	2901900	+		46285	27043	38347	38369	49727	49727					0.04941761008240064
QNPPWWERE	9	Unmodified	_QNPPWWERE_					0	0	0		ENST00000598497.1_1_19:58598487-58598820:-|nuORF;ENST00000594191.5_1_19:58598487-58609571:-|nuORF	ENST00000598497.1_1_19:58598487-58598820:-|nuORF	ENST00000598497.1_1_19:58598487-58598820:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	620.849853515625	2	621.288537	1240.56252	-0.68761	-0.00042721	-3.4489	-0.0021428	-4.1365	-0.00257	621.2861705525886	60.043	0.43633	60.043	59.802	60.238	0					20	10	3	0	0	0	0.027462	1	5240	5240		34.173	1.422	1	376800			46286	14160	38348	38370	49728	49728					-0.048138283018943184
QNPSLHHPRA	10	Unmodified	_QNPSLHHPRA_					0	0	0		AFF1-UBR5|1|fusion;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	AFF1-UBR5|1|fusion	AFF1-UBR5|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	578.8027954101562	2	578.802146	1155.58974	-0.67925	-0.00039315	0.16354	9.4658E-05	-0.51571	-0.0002985	578.8020024165886	33.508	0.53898	33.508	33.285	33.824	0					17	10	2	0	0	0	0.69073	1	1550	1550		31.53	1.0262	1	243190			46287	45	38349	38371	49729	49729					0.018167000291441582
QNPTADELH	9	Unmodified	_QNPTADELH_					0	0	0		nc|ENSG00000226807|Q6ZUA9|MROH5	nc|ENSG00000226807|Q6ZUA9|MROH5	nc|ENSG00000226807|Q6ZUA9|MROH5	MULTI-SECPEP	OvCa9_classI_Rep2	2	512.8138427734375	2	512.738345	1023.46214	-1.1596	-0.00059457	2.2649	0.0011613	1.1053	0.00056674	512.739239721747	63.666	1.0456	60.922	60.48	61.525	-2.7444					26	19	2	0	0	0	0.027441	1	4819	4819		58.782	23.164	1	28300			46288	15324	38350	38372	49730	49730					-0.04865485355583132
QNPWLLQV	8	Unmodified	_QNPWLLQV_					0	0	0			REV__KRTAP9-9|p.T68Sfs*79|1|0.17|ENSG00000198083|chr17:41255587-41255588|-/G|frameshift_variant	REV__KRTAP9-9|p.T68Sfs*79|1|0.17|ENSG00000198083|chr17:41255587-41255588|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.8010559082031	2	499.276909	996.539266	-0.54184	-0.00027053	-2.6115	-0.0013039	-3.1534	-0.0015744	499.27530350778824	52.039	0.81039	48.856	48.614	49.425	-3.1834					26	15	2	0	0	0	0.028476	1	3097	3097		47.916	0	1	47844	+		46289	28344	38351	38373	49731	49731					0.04085777651425815
QNPYLHVE	8	Unmodified	_QNPYLHVE_					0	0	0		nc|ENSG00000143514|Q13625-2|TP53BP2;nc|ENSG00000143514|Q13625|TP53BP2;ENSG00000143514|ENST00000343537|TP53BP2	nc|ENSG00000143514|Q13625-2|TP53BP2	nc|ENSG00000143514|Q13625-2|TP53BP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.2878723144531	2	500.248349	998.482145	-0.70773	-0.00035404	-1.4635	-0.00073214	-2.1713	-0.0010862	500.7476606959055	77.377	0.58182	74.56	74.244	74.825	-2.8165					13	11	2	0	0	0	0.028476	1	6159	6159		17.365	0	1	31166			46290	5066	38352	38374	49732	49732					-0.017156896249616693
QNPYYYVDG	9	Unmodified	_QNPYYYVDG_					0	0	0		ITIH3|p.Q851Pfs*28|1|0.05|ENSG00000162267|chr3:52808557-52808558|-/T|frameshift_variant;nc|ENSG00000162267|Q06033-2|ITIH3;ENSG00000162267|ENST00000449956|ITIH3;ENST00000493136.1_1_3:52840081-52842694:+|nuORF	ITIH3|p.Q851Pfs*28|1|0.05|ENSG00000162267|chr3:52808557-52808558|-/T|frameshift_variant	ITIH3|p.Q851Pfs*28|1|0.05|ENSG00000162267|chr3:52808557-52808558|-/T|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.3237915039062	2	559.743096	1117.47164	-0.431	-0.00024125	0.45193	0.00025297	0.02093	1.1715E-05	559.7430028743817	36.562	0.21997	36.562	36.442	36.662	0					6	4	2	0	0	0	0.027462	1	1934	1934		42.396	11.892	1	50509			46291	6166	38353	38375	49733	49733					-0.08239717070068764
QNQEKLQEL	9	Unmodified	_QNQEKLQEL_					0	0	0		nc|ENSG00000100503|Q8N4C6-4|NIN;NIN|p.E2037Rfs*4|1|0.05|ENSG00000100503|chr14:50726036-50726036|C/-|frameshift_variant;nc|ENSG00000100503|Q8N4C6-9|NIN;nc|ENSG00000100503|Q8N4C6-2|NIN;nc|ENSG00000100503|Q8N4C6|NIN;nc|ENSG00000100503|Q8N4C6-5|NIN;nc|ENSG00000100503|Q8N4C6-10|NIN;ENSG00000100503|ENST00000530997|NIN;nc|ENSG00000100503|Q8N4C6-6|NIN;nc|ENSG00000100503|Q8N4C6-11|NIN	nc|ENSG00000100503|Q8N4C6-4|NIN	nc|ENSG00000100503|Q8N4C6-4|NIN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.3170166015625	2	565.296027	1128.5775	1.313	0.00074224	1.1814	0.00066782	2.4944	0.0014101	565.2979297896093	59.892	0.44058	56.462	56.259	56.7	-3.43					18	8	4	0	0	0	0.024842	1	4045	4045		154.12	10.232	1	57535			46292	2077	38354	38376	49734	49734					0.01835618775430703
QNQKRLYI	8	Unmodified	_QNQKRLYI_					0	0	0		ENSG00000121579|ENST00000240922|NAA50	ENSG00000121579|ENST00000240922|NAA50	ENSG00000121579|ENST00000240922|NAA50	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8054809570312	2	531.806365	1061.59818	-0.13133	-6.9841E-05	0.10118	5.381E-05	-0.030145	-1.6031E-05	531.8062968450569	34.713	1.4032	31.924	31.648	33.051	-2.7881					74	27	5	0	0	0	0.7043	1	1078	1078		42.474	1.6963	1	530470			46293	3489	38355	38377	49735	49735					0.06984253945756791
QNQLFFISI	9	Unmodified	_QNQLFFISI_					0	0	0			REV__ENST00000301067.11_1_12:49414036-49414432:-|nuORF	REV__ENST00000301067.11_1_12:49414036-49414432:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	555.8063354492188	2	555.303124	1108.5917	0.58251	0.00032347	2.0786	0.0011543	2.6611	0.0014777	555.8047679703503	162.04	0.66348	162.04	161.61	162.28	0					23	12	3	0	0	0	0.33652	1	19004	19004		58.782	4.0056	1	64407	+		46294	24245	38356	38378	49736	49736					0.04174315994373501
QNQLLKRQAAL	11	Unmodified	_QNQLLKRQAAL_					0	0	0		SBF2|p.L1514Ffs*17|1|0.21|ENSG00000133812|chr11:9795861-9795862|-/TTGGGGATGTTGCCTGGACCTTGGAA|frameshift_variant;ENSG00000133812|ENST00000256190|SBF2	SBF2|p.L1514Ffs*17|1|0.21|ENSG00000133812|chr11:9795861-9795862|-/TTGGGGATGTTGCCTGGACCTTGGAA|frameshift_variant	SBF2|p.L1514Ffs*17|1|0.21|ENSG00000133812|chr11:9795861-9795862|-/TTGGGGATGTTGCCTGGACCTTGGAA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8823852539062	2	641.883136	1281.75172	-3.6311	-0.0023307	2.7968	0.0017952	-0.8343	-0.00053552	641.8847801872174	153.39	4.0845	151.94	150.68	154.77	-1.4516					420	106	6	0	0	0	0.72505	1	15384	15384		14.865	0.72775	1	809780			46295	4238	38357	38379	49737	49737					0.12211243991418996
QNQLPQLQQ	9	Unmodified	_QNQLPQLQQ_					0	0	0		ENST00000407472.5_1_22:19838375-19838693:-|nuORF	ENST00000407472.5_1_22:19838375-19838693:-|nuORF	ENST00000407472.5_1_22:19838375-19838693:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.2862548828125	2	548.790912	1095.56727	1.9488	0.0010695	3.5567	0.0019519	5.5055	0.0030214	548.7927531223827	79.804	1.5706	79.804	79.509	81.08	0					48	37	2	0	0	0	0.027279	1	8218	8218		82.305	0	1	3086200			46296	11495	38358	38380	49738	49738					0.023310558408638826
QNQLVYYF	8	Unmodified	_QNQLVYYF_					0	0	0		ENSG00000099338|ENST00000409235|CATSPERG	ENSG00000099338|ENST00000409235|CATSPERG	ENSG00000099338|ENST00000409235|CATSPERG	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.2951049804688	2	537.766374	1073.5182	2.0098	0.0010808	-0.48664	-0.0002617	1.5232	0.00081911	537.7674595376651	133.84	0.28679	133.84	133.72	134.01	0					8	5	2	0	0	0	0.028476	1	15564	15564		26.796	4.8362	1	26889			46297	1969	38359	38381	49739	49739					-0.015622324481228134
QNQQPHRAQ	9	Unmodified	_QNQQPHRAQ_					0	0	0		nc|ENSG00000204248|P13942-8|COL11A2;nc|ENSG00000204248|P13942-6|COL11A2;nc|ENSG00000204248|P13942-7|COL11A2;nc|ENSG00000204248|P13942-4|COL11A2;nc|ENSG00000204248|P13942-5|COL11A2;nc|ENSG00000204248|P13942-2|COL11A2;nc|ENSG00000204248|P13942-3|COL11A2;nc|ENSG00000204248|P13942|COL11A2;ENSG00000204248|ENST00000341947|COL11A2;nc|ENSG00000204248|P13942-9|COL11A2	nc|ENSG00000204248|P13942-8|COL11A2	nc|ENSG00000204248|P13942-8|COL11A2	MULTI-SECPEP	OvCa9_classI_Rep2	2	554.3470458984375	2	553.776128	1105.5377	1.1007	0.00060954	1.0363	0.00057389	2.137	0.0011834	553.7765002471285	113.71	0.79076	113.59	113.22	114.01	-0.11777					26	15	2	0	0	0	0.027462	1	10770	10770		29.15	0	1	23397			46298	8960	38360	38382	49740	49740					-0.010844633846318175
QNQRFDWKHDL	11	Unmodified	_QNQRFDWKHDL_					0	0	0		ENST00000528985.5_2_11:126081668-126103543:+|nuORF	ENST00000528985.5_2_11:126081668-126103543:+|nuORF	ENST00000528985.5_2_11:126081668-126103543:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.3026428222656	3	496.24438	1485.71131	1.5725	0.00078034	-2.0766	-0.0010305	-0.50408	-0.00025015	496.2434398472828	92.159	0.37876	92.159	91.964	92.343	0					21	8	4	0	0	0	0.026145	1	9932	9932		12.957	0	1	160340			46299	13265	38361	38383	49741	49741					-0.012117223990117054
QNQRPQNKNN	10	Unmodified	_QNQRPQNKNN_					0	0	0		tr|A0A553SHN3|A0A553SHN3_NIACISingle-strandedDNA-bindingproteinOS=NialliacirculansOX=1397GN=ssbPE=3SV=1	tr|A0A553SHN3|A0A553SHN3_NIACISingle-strandedDNA-bindingproteinOS=NialliacirculansOX=1397GN=ssbPE=3SV=1	tr|A0A553SHN3|A0A553SHN3_NIACISingle-strandedDNA-bindingproteinOS=NialliacirculansOX=1397GN=ssbPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	414.2113342285156	3	414.209558	1239.60684	0.28415	0.0001177	-0.076372	-3.1634E-05	0.20778	8.6064E-05	414.2094540183585	49.088	5.926	49.088	48.204	54.13	0					277	137	3	0	0	0	0.53807	1	3860	3860		49.536	9.4779	1	1950600			46300	33289	38362	38384	49742	49742					-0.0033742415571396123
QNQRSGHLNL	10	Unmodified	_QNQRSGHLNL_					0	0	0		C2|p.I247N|1|0.05|ENSG00000166278|chr6:31934190-31934190|T/A|missense_variant	C2|p.I247N|1|0.05|ENSG00000166278|chr6:31934190-31934190|T/A|missense_variant	C2|p.I247N|1|0.05|ENSG00000166278|chr6:31934190-31934190|T/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	583.8016357421875	2	583.804885	1165.59522	-1.251	-0.00073034	-3.0138	-0.0017594	-4.2648	-0.0024898	583.8030699874896	54.091	2.1426	51.277	50.677	52.82	-2.8139					121	42	5	0	0	0	0.37436	1	3671	3671		71.877	2.2498	1	1035800			46301	165	38363	38385	49743	49743					0.01904378820972852
QNQTQMHDM	9	Unmodified	_QNQTQMHDM_					0	0	0			REV__nc|ENSG00000185697|P10243-2|MYBL1	REV__nc|ENSG00000185697|P10243-2|MYBL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.282470703125	2	566.72914	1131.44373	1.5562	0.00088193	-2.2792	-0.0012917	-0.72298	-0.00040974	566.7276756516491	109.27	0.48477	109.27	109.11	109.59	0					16	10	2	0	0	0	0.027462	1	12419	12419		34.173	0	1	325120	+		46302	22520	38364	38386	49744	49744					-0.11673686593439925
QNRADEER	8	Unmodified	_QNRADEER_					0	0	0			REV__ENSG00000103184|ENST00000251170|SEC14L5	REV__ENSG00000103184|ENST00000251170|SEC14L5	MULTI-MSMS	OvCa9_classI_Rep3	3	509.7421569824219	2	509.239044	1016.46353	1.5833	0.00080629	1.7115	0.00087157	3.2948	0.0016779	509.2399801613584	60.9	1.9539	57.832	56.783	58.737	-3.0685					78	52	2	0	0	0	0.75723	1	2101	2101		23.042	3.0457	1	24864	+		46303	17600	38365	38387	49745	49745					-0.044038512668180374
QNRDIKTTM	9	Unmodified	_QNRDIKTTM_					0	0	0			REV__ENST00000578151.1_1_17:56787228-56811489:+|nuORF	REV__ENST00000578151.1_1_17:56787228-56811489:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.7701416015625	2	553.784773	1105.55499	2.879	0.0015943	-0.16265	-9.0075E-05	2.7163	0.0015043	554.285944431365	102.64	0.55199	102.64	102.42	102.98	0					21	12	3	0	0	0	0.027462	1	11429	11429		31.53	0	1	391370	+		46304	17883	38366	38388	49746	49746					0.006436961061353941
QNRERMTMK	9	Unmodified	_QNRERMTMK_					0	0	0			REV__ENSG00000128915|ENST00000261520|ICE2	REV__ENSG00000128915|ENST00000261520|ICE2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	597.831787109375	2	597.297524	1192.5805	-1.0305	-0.00061551	-2.3428	-0.0013993	-3.3733	-0.0020149	597.2955836063901	108.66	0.76171	106.93	106.52	107.28	-1.7256					31	14	3	0	0	0	0.027462	1	9959	9959		21.96	0	1	36527	+		46305	18877	38367	38389	49747	49747					-0.008091526430916929
QNRGEGLP	8	Unmodified	_QNRGEGLP_					0	0	0			REV__nc|ENSG00000106078|O75128-3|COBL	REV__nc|ENSG00000106078|O75128-3|COBL	MULTI-MSMS	OvCa99_classI_Rep5	1	435.72772216796875	2	435.725041	869.435529	0.32974	0.00014368	4.2888	0.0018687	4.6185	0.0020124	435.72681451177107	47.961	0.81722	47.961	47.638	48.455	0					49	18	4	0	0	0	0.61758	1	3493	3493		60.294	6.9425	1	1792500	+		46306	28782	38368	38390	49748	49748					-0.0044112945624874556
QNRIKVLAV	9	Unmodified	_QNRIKVLAV_					0	0	0			REV__tr|A0A7D7A195|A0A7D7A195_9CLOTFAD:proteinFMNtransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03035PE=3SV=1	REV__tr|A0A7D7A195|A0A7D7A195_9CLOTFAD:proteinFMNtransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03035PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.8145141601562	2	520.832383	1039.65021	-0.85214	-0.00044382	-1.5664	-0.00081583	-2.4185	-0.0012597	520.8315675378193	79.858	0.33871	77.106	76.938	77.277	-2.7514					10	6	2	0	0	0	0.027462	1	6515	6515		24.203	0	1	17563	+		46307	32480	38369	38391	49749	49749					0.13197417359515384
QNRILLVIL	9	Unmodified	_QNRILLVIL_					0	0	0		ENSG00000151532|ENST00000393077|VTI1A;TCF7L2-VTI1A|1|fusion;TCF7L2-VTI1A|2|fusion;TCF7L2-VTI1A|6|fusion;TCF7L2-VTI1A|3|fusion;TCF7L2-VTI1A|4|fusion;TCF7L2-VTI1A|5|fusion;TCF7L2-VTI1A|7|fusion	ENSG00000151532|ENST00000393077|VTI1A	ENSG00000151532|ENST00000393077|VTI1A	MULTI-MSMS	OvCa9_classI_Rep2	2	541.3568115234375	2	541.358234	1080.70191	-1.2137	-0.00065704	0.7343	0.00039752	-0.47939	-0.00025952	541.3585147699355	57.508	1.3	54.716	54.377	55.678	-2.792					74	25	4	0	0	0	0.59983	1	4116	4116		31.955	1.4512	1	268020			46308	5562	38370	38392	49750	49750					0.16479161053416647
QNRKERNRQH	10	Unmodified	_QNRKERNRQH_					0	0	0			REV__ENST00000394817.6_1_5:138456746-138463449:-|nuORF	REV__ENST00000394817.6_1_5:138456746-138463449:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	455.7765808105469	3	455.911735	1364.71338	-0.35394	-0.00016136	1.6162	0.00073686	1.2623	0.0005755	455.91234525026556	40.303	1.3965	37.349	36.913	38.31	-2.9541					48	26	3	0	0	0	0.027165	1	1701	1701		26.063	9.5335	1	62494	+		46309	25302	38371	38393	49751	49751					0.04560751129474738
QNRKREEKKLS	11	Unmodified	_QNRKREEKKLS_					0	0	0			REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	REV__ENST00000472697.5_1_3:142095319-142144369:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	472.29522705078125	3	472.60743	1414.80046	-0.19279	-9.1113E-05	2.6552	0.0012549	2.4624	0.0011638	472.6086197850592	96.05	1.9063	94.222	93.13	95.036	-1.8286					91	37	4	0	0	0	0.025818	1	6234	6234		23.378	12.38	1	513590	+		46310	18180	38372	38394	49752	49752					0.10965112560506896
QNRLFELPH	9	Unmodified	_QNRLFELPH_					0	0	0			REV__nc|ENSG00000119318|P54727-2|RAD23B	REV__nc|ENSG00000119318|P54727-2|RAD23B	MULTI-MSMS	OvCa9_classI_Rep2	2	577.3065795898438	2	577.309272	1152.60399	-1.4178	-0.00081848	-2.4756	-0.0014292	-3.8934	-0.0022477	577.3077489952981	39.242	0.99163	36.532	36.31	37.302	-2.7097					59	19	4	0	0	0	0.29717	1	1907	1907		63.306	9.9548	1	269270	+		46311	18435	38373	38395	49753	49753					0.03379352457409368
QNRLFELPHGG	11	Unmodified	_QNRLFELPHGG_					0	0	0			REV__nc|ENSG00000119318|P54727-2|RAD23B	REV__nc|ENSG00000119318|P54727-2|RAD23B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	423.206787109375	3	423.222916	1266.64692	-0.42292	-0.00017899	-2.1269	-0.00090014	-2.5498	-0.0010791	423.22197480761423	52.047	1.7642	48.858	48.507	50.271	-3.1889					91	34	7	0	0	0	0.025714	1	3182	3182		25.126	0	1	410740	+		46312	18435	38374	38396	49754	49754					0.02426122514839335
QNRLRNKLLI	10	Unmodified	_QNRLRNKLLI_					0	0	0			REV__CDC42BPB|p.H1217L|1|0.82|ENSG00000198752|chr14:102946566-102946566|T/A|missense_variant	REV__CDC42BPB|p.H1217L|1|0.82|ENSG00000198752|chr14:102946566-102946566|T/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	423.206787109375	3	423.270089	1266.78844	-0.55035	-0.00023294	1.8855	0.00079807	1.3351	0.00056512	423.270166923392	52.321	1.5084	49.113	48.692	50.2	-3.208					62	29	3	0	0	0	0.026968	1	3182	3182		29.17	4.0441	1	44393	+		46313	15763	38375	38397	49755	49755					0.16571540607969837
QNRPFYGNQQ	10	Unmodified	_QNRPFYGNQQ_					0	0	0		ENAM|p.R351G|1|0.33|ENSG00000132464|chr4:70642477-70642477|A/G|missense_variant	ENAM|p.R351G|1|0.33|ENSG00000132464|chr4:70642477-70642477|A/G|missense_variant	ENAM|p.R351G|1|0.33|ENSG00000132464|chr4:70642477-70642477|A/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	417.9065856933594	3	417.867021	1250.57923	-0.71735	-0.00029976	-2.5075	-0.0010478	-3.2248	-0.0013476	417.8655014064653	51.413	0.39911	48.239	48.022	48.421	-3.1734					9	7	2	0	0	0	0.026548	1	3032	3032		46.457	0	1	13152			46314	797	38376	38398	49756	49756					-0.03603327415953572
QNRRAKWRK	9	Unmodified	_QNRRAKWRK_					0	0	0		nc|ENSG00000100987|Q9NZR4-5|VSX1;nc|ENSG00000100987|Q9NZR4-8|VSX1;ENSG00000100987|ENST00000376709|VSX1;ENSG00000119614|ENST00000261980|VSX2;ENSG00000165606|ENST00000374139|DRGX;ENSG00000180318|ENST00000316824|ALX1;ENSG00000052850|ENST00000652299|ALX4;ENSG00000156150|ENST00000647563|ALX3;ENSG00000004848|ENST00000379044|ARX;ENSG00000164853|ENST00000316333|UNCX;nc|ENSG00000106410|O60393-2|NOBOX;ENSG00000106410|ENST00000467773|NOBOX	nc|ENSG00000100987|Q9NZR4-5|VSX1;ENSG00000156150|ENST00000647563|ALX3;ENSG00000004848|ENST00000379044|ARX;ENSG00000164853|ENST00000316333|UNCX;nc|ENSG00000106410|O60393-2|NOBOX	ENSG00000156150|ENST00000647563|ALX3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.8988342285156	3	414.914528	1241.72176	-0.64476	-0.00026752	-2.4468	-0.0010152	-3.0915	-0.0012827	414.9124963400176	40.858	0.78233	37.904	37.58	38.362	-2.9541					30	14	3	0	0	0	0.027462	1	1772	1772		40.778	5.2825	1	17470			46315	2129;5822;835;6492;2550	38377	38399	49757	49757					0.11056349836712798
QNRRHNVK	8	Unmodified	_QNRRHNVK_					0	0	0			REV__ENSG00000166801|ENST00000675163|FAM111A	REV__ENSG00000166801|ENST00000675163|FAM111A	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2922973632812	2	526.29703	1050.57951	2.7683	0.0014569	1.9839	0.0010441	4.7522	0.0025011	526.2979828229064	87.983	1.2126	87.983	87.671	88.883	0					72	28	4	0	0	0	0.028476	1	9446	9446		17.365	0	1	5409800	+		46316	21221	38378	38400	49758	49758					0.05624137094537218
QNRRLRVL	8	Unmodified	_QNRRLRVL_					0	0	0			REV__nc|ENSG00000166596|Q8N1V2-3|CFAP52	REV__nc|ENSG00000166596|Q8N1V2-3|CFAP52	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.7896728515625	2	527.833249	1053.65194	-1.4441	-0.00076224	3.8086	0.0020103	2.3645	0.0012481	527.8353566778512	70.749	0.2408	67.276	67.09	67.331	-3.4726					10	4	3	0	0	0	0.028476	1	5341	5341		8.2313	0	1	50030	+		46317	21209	38379	38401	49759	49759					0.12726471168139142
QNRSVHGAV	9	Unmodified	_QNRSVHGAV_					0	0	0			REV__ENST00000225308.12_1_17:42397045-42397120:-|nuORF	REV__ENST00000225308.12_1_17:42397045-42397120:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.77813720703125	2	484.25704	966.499526	-0.25898	-0.00012541	0.38353	0.00018573	0.12455	6.0316E-05	484.257096971419	43.262	0.46448	43.262	43.014	43.478	0					23	10	3	0	0	0	0.027461	1	2810	2810		25.574	0	1	213790	+		46318	23757	38380	38402	49760	49760					0.01493650700717808
QNRTRAHLKQ	10	Unmodified	_QNRTRAHLKQ_					0	0	0		tr|A0A553SG49|A0A553SG49_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_10195PE=4SV=1	tr|A0A553SG49|A0A553SG49_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_10195PE=4SV=1	tr|A0A553SG49|A0A553SG49_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_10195PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	417.90692138671875	3	417.90581	1250.6956	-0.79569	-0.00033252	2.6716	0.0011165	1.876	0.00078397	417.90691486872447	51.141	1.5374	48.347	47.975	49.512	-2.794					76	30	6	0	0	0	0.4826	1	3353	3353		56.632	3.0354	1	1288200			46319	33118	38381	38403	49761	49761					0.08028035874599482
QNSALDQARTE	11	Unmodified	_QNSALDQARTE_					0	0	0			REV__TBKBP1|p.L319*|1|1.0|ENSG00000198933|chr17:47708475-47708475|C/-|frameshift_variant	REV__TBKBP1|p.L319*|1|1.0|ENSG00000198933|chr17:47708475-47708475|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	616.322998046875	2	616.796923	1231.57929	2.2642	0.0013965	-1.2072	-0.0007446	1.0569	0.00065192	616.7971880724447	82.695	0.17143	82.695	82.565	82.736	0					5	3	2	0	0	0	0.025759	1	8568	8568		42.864	18.345	1	71609	+		46320	23097	38382	38404	49762	49762					-0.027233722066284827
QNSEQLIVI	9	Unmodified	_QNSEQLIVI_					0	0	0		tr|A0A7D7ACC8|A0A7D7ACC8_9CLOTL,D-TPasecatalyticdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18650PE=4SV=1	tr|A0A7D7ACC8|A0A7D7ACC8_9CLOTL,D-TPasecatalyticdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18650PE=4SV=1	tr|A0A7D7ACC8|A0A7D7ACC8_9CLOTL,D-TPasecatalyticdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18650PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.2904052734375	2	522.290214	1042.56587	-0.14033	-7.3294E-05	-1.0047	-0.00052473	-1.145	-0.00059802	522.2898843346509	60.894	0.89445	57.464	57.144	58.038	-3.43					51	17	4	0	0	0	0.10363	1	4149	4149		96.19	11.275	1	557660			46321	36226	38383	38405	49763	49763					0.04629421752088092
QNSEQLIVI	9	Unmodified	_QNSEQLIVI_					0	0	0		tr|A0A7D7ACC8|A0A7D7ACC8_9CLOTL,D-TPasecatalyticdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18650PE=4SV=1	tr|A0A7D7ACC8|A0A7D7ACC8_9CLOTL,D-TPasecatalyticdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18650PE=4SV=1	tr|A0A7D7ACC8|A0A7D7ACC8_9CLOTL,D-TPasecatalyticdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18650PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	522.290214	1042.56587	-0.42294	-0.0002209	0.13234	6.9121E-05	-0.2906	-0.00015178	522.2901401666179	60.35	0.94925	57.58	57.133	58.083	-2.7702	0.058068	0.00027455	NaN	96.19	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103240			46322	36226	38383	38405							0.04629421752088092
QNSFSLTGNM	10	Unmodified	_QNSFSLTGNM_					0	0	0			REV__tr|A0A553SJ34|A0A553SJ34_NIACIProbablecelldivisionproteinWhiAOS=NialliacirculansOX=1397GN=whiAPE=3SV=1	REV__tr|A0A553SJ34|A0A553SJ34_NIACIProbablecelldivisionproteinWhiAOS=NialliacirculansOX=1397GN=whiAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.2815551757812	2	549.747856	1097.48116	-0.024703	-1.358E-05	1.0483	0.00057631	1.0236	0.00056273	549.7480651227103	142.59	0.71448	141.14	140.83	141.55	-1.4427					20	13	2	0	0	0	0.027056	1	13974	13974		27.882	6.9353	1	18988	+		46323	29960	38384	38406	49764	49764					-0.06368272056170099
QNSFSLTGNM	10	Unmodified	_QNSFSLTGNM_					0	0	0			REV__tr|A0A553SJ34|A0A553SJ34_NIACIProbablecelldivisionproteinWhiAOS=NialliacirculansOX=1397GN=whiAPE=3SV=1	REV__tr|A0A553SJ34|A0A553SJ34_NIACIProbablecelldivisionproteinWhiAOS=NialliacirculansOX=1397GN=whiAPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	549.747856	1097.48116	-2.9469	-0.00162	3.3544	0.0018441	0.40757	0.00022406	550.2510687877916	142.05	0.49675	141.04	140.83	141.33	-1.0106	-0.05378	0.0013741	NaN	27.882	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9431.2	+		46324	29960	38384	38406							-0.06368272056170099
QNSKPLKSI	9	Unmodified	_QNSKPLKSI_					0	0	0			REV__ENSG00000094975|ENST00000263688|SUCO	REV__ENSG00000094975|ENST00000263688|SUCO	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.80181884765625	2	507.800749	1013.58694	-1.2338	-0.00062655	0.78921	0.00040076	-0.44464	-0.00022579	507.8011244097221	54.456	2.4006	51.208	50.466	52.866	-3.2474					94	46	4	0	0	0	0.12515	1	3391	3391		90.37	2.6734	1	1499800	+		46325	17280	38385	38407	49765	49765					0.08069431851606623
QNSLPQSTTN	10	Unmodified	_QNSLPQSTTN_					0	0	0			REV__ENSG00000155313|ENST00000400183|USP25	REV__ENSG00000155313|ENST00000400183|USP25	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.7474365234375	2	545.262185	1088.50982	0.18721	0.00010208	-0.96517	-0.00052627	-0.77797	-0.0004242	545.2615446349198	111	0.63126	109.4	109.17	109.8	-1.6011					16	11	2	0	0	0	0.027001	1	10248	10248		16.007	0	1	19551	+		46326	20420	38386	38408	49766	49766					-0.030898311553755775
QNSLPQSTTN	10	Unmodified	_QNSLPQSTTN_					0	0	0			REV__ENSG00000155313|ENST00000400183|USP25	REV__ENSG00000155313|ENST00000400183|USP25	MULTI-MATCH	OvCa9_classI_Rep3	3		2	545.262185	1088.50982	0.19448	0.00010604	-0.63709	-0.00034738	-0.44261	-0.00024134	545.2616164518942	110.47	0.47368	109.32	109.03	109.51	-1.1444	-0.039025	0.00020967	NaN	16.007	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17914	+		46327	20420	38386	38408							-0.030898311553755775
QNSLTELKT	9	Unmodified	_QNSLTELKT_					0	0	0			REV__ENSG00000187672|ENST00000288221|ERC2	REV__ENSG00000187672|ENST00000288221|ERC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.8041381835938	2	517.279846	1032.54514	-1.3731	-0.00071028	-4.0436	-0.0020917	-5.4167	-0.0028019	517.277879493607	72.038	0.58633	68.582	68.412	68.998	-3.4563					15	11	2	0	0	0	0.027462	1	5501	5501		32.812	0	1	40463	+		46328	22652	38387	38409	49767	49767					0.030168313724288964
QNSMRYAW	8	Unmodified	_QNSMRYAW_					0	0	0		tr|A0A7D6VU12|A0A7D6VU12_9CLOTGlutamatedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=gdhAPE=3SV=1	tr|A0A7D6VU12|A0A7D6VU12_9CLOTGlutamatedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=gdhAPE=3SV=1	tr|A0A7D6VU12|A0A7D6VU12_9CLOTGlutamatedehydrogenaseOS=ClostridiumintestinaleOX=36845GN=gdhAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.3161010742188	2	528.240001	1054.46545	-0.59279	-0.00031313	-0.88415	-0.00046704	-1.4769	-0.00078017	528.2393869194634	102.74	2.2481	101.22	100.84	103.09	-1.5211					102	42	4	0	0	0	0.028476	1	7040	7040		40.573	0	1	352740			46329	35157	38388	38410	49768	49768					-0.05960513782565613
QNSSPLPCR	9	Unmodified	_QNSSPLPCR_					0	0	0		FAM161A|p.L392F|1|0.2|ENSG00000170264|chr2:61839828-61839828|T/A|missense_variant;nc|ENSG00000170264|Q3B820-2|FAM161A;nc|ENSG00000170264|Q3B820|FAM161A;ENSG00000170264|ENST00000404929|FAM161A	FAM161A|p.L392F|1|0.2|ENSG00000170264|chr2:61839828-61839828|T/A|missense_variant	FAM161A|p.L392F|1|0.2|ENSG00000170264|chr2:61839828-61839828|T/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.76397705078125	2	501.245283	1000.47601	-0.51286	-0.00025707	-4.1448	-0.0020776	-4.6577	-0.0023346	501.24383896893215	35.968	0.50462	35.968	35.753	36.257	0					22	10	3	0	0	0	0.027461	1	1871	1871		32.812	0	1	82713			46330	7086	38389	38411	49769	49769					-0.024205311281207287
QNSSRTLEKN	10	Unmodified	_QNSSRTLEKN_					0	0	0		ENSG00000122545|ENST00000350320|SEPTIN7;nc|ENSG00000122545|Q16181-2|SEPTIN7	ENSG00000122545|ENST00000350320|SEPTIN7	ENSG00000122545|ENST00000350320|SEPTIN7	MSMS	OvCa99_classI_Rep5	1	588.8018188476562	2	588.802008	1175.58946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.448	1	64.448	63.948	64.948	0								0	0	0	0.089874	1	5860	5860		74.255	2.3776	1				46331	3539	38390	38412	49770	49770					0.008692355186440182
QNSVTAPSPYA	11	Unmodified	_QNSVTAPSPYA_					0	0	0		ENST00000460036.1_1_3:189507541-189590785:+|nuORF;nc|ENSG00000073282|Q9H3D4-6|TP63;nc|ENSG00000073282|Q9H3D4-8|TP63;nc|ENSG00000073282|Q9H3D4-4|TP63;nc|ENSG00000073282|Q9H3D4-5|TP63;nc|ENSG00000073282|Q9H3D4-7|TP63;nc|ENSG00000073282|Q9H3D4-3|TP63;nc|ENSG00000073282|Q9H3D4-12|TP63;nc|ENSG00000073282|Q9H3D4-2|TP63;nc|ENSG00000073282|Q9H3D4-11|TP63;ENSG00000073282|ENST00000264731|TP63	ENST00000460036.1_1_3:189507541-189590785:+|nuORF	ENST00000460036.1_1_3:189507541-189590785:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.2875366210938	2	567.774928	1133.5353	-0.82642	-0.00046922	-0.062416	-3.5438E-05	-0.88884	-0.00050466	567.7742648996154	65.651	0.20148	65.651	65.546	65.748	0					10	4	3	0	0	0	0.025861	1	6025	6025		23.523	9.3856	1	196190			46332	1490	38391	38413	49771	49771					-0.026123566329488312
QNSYILVLAI	10	Unmodified	_QNSYILVLAI_					0	0	0		tr|A0A553SQ00|A0A553SQ00_NIACIXylosetransportsystempermeaseproteinXylHOS=NialliacirculansOX=1397GN=CEQ21_14865PE=4SV=1	tr|A0A553SQ00|A0A553SQ00_NIACIXylosetransportsystempermeaseproteinXylHOS=NialliacirculansOX=1397GN=CEQ21_14865PE=4SV=1	tr|A0A553SQ00|A0A553SQ00_NIACIXylosetransportsystempermeaseproteinXylHOS=NialliacirculansOX=1397GN=CEQ21_14865PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3296508789062	2	567.331882	1132.64921	-3.474	-0.0019709	-0.21845	-0.00012393	-3.6925	-0.0020949	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.71192	1	12356	12356		29.15	2.4566	1	458690			46333	34099	38392	38414	49772	49772					0.08819158199935373
QNTIINESR	9	Unmodified	_QNTIINESR_					0	0	0		nc|ENSG00000114455|Q9UM44-2|HHLA2;ENSG00000114455|ENST00000467761|HHLA2	nc|ENSG00000114455|Q9UM44-2|HHLA2	nc|ENSG00000114455|Q9UM44-2|HHLA2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.778564453125	2	537.780544	1073.54654	-1.6644	-0.00089509	-2.168	-0.0011659	-3.8324	-0.002061	537.7792621884437	73.589	1.3872	70.193	69.64	71.027	-3.3961					44	28	3	0	0	0	0.027447	1	5812	5812		47.657	0	1	91942			46334	3022	38393	38415	49773	49773					0.01270465461175263
QNTKDVVSLIK	11	Unmodified	_QNTKDVVSLIK_					0	0	0			REV__tr|A0A7D6VP13|A0A7D6VP13_9CLOTMethyl-acceptingtransducerdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20690PE=4SV=1	REV__tr|A0A7D6VP13|A0A7D6VP13_9CLOTMethyl-acceptingtransducerdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20690PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	622.8667602539062	2	622.864077	1243.7136	-0.0001442	-8.9818E-08	0.64501	0.00040175	0.64487	0.00040166	622.8643161699255	57.79	0.80038	57.79	57.48	58.28	0					35	18	3	0	0	0	0.48812	1	4878	4878		54.722	11.858	1	1233900	+		46335	31223	38394	38416	49774	49774					0.10149313286069628
QNTKDVVSLIK	11	Unmodified	_QNTKDVVSLIK_					0	0	0			REV__tr|A0A7D6VP13|A0A7D6VP13_9CLOTMethyl-acceptingtransducerdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20690PE=4SV=1	REV__tr|A0A7D6VP13|A0A7D6VP13_9CLOTMethyl-acceptingtransducerdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20690PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	622.864077	1243.7136	-0.0001442	-8.9818E-08	0.64501	0.00040175	0.64487	0.00040166	622.8643161699255	57.79	0.80038	57.79	57.48	58.28	0	0	0	NaN	54.722	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1233900	+		46336	31223	38394	38416							0.10149313286069628
QNTYRFTIH	9	Unmodified	_QNTYRFTIH_					0	0	0			REV__L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|340|3|anti-sense	REV__L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|340|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.8307495117188	2	590.298904	1178.58326	-0.38382	-0.00022657	-1.9568	-0.0011551	-2.3407	-0.0013817	590.2981941286959	44.7	0.44545	44.7	44.44	44.886	0					12	9	2	0	0	0	0.027462	1	3014	3014		42.396	14.514	1	53981	+		46337	28349	38395	38417	49775	49775					0.0011076207774749491
QNVAPTLTML	10	Unmodified	_QNVAPTLTML_					0	0	0		ENSG00000128011|ENST00000248668|LRFN1	ENSG00000128011|ENST00000248668|LRFN1	ENSG00000128011|ENST00000248668|LRFN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.3133544921875	2	544.294442	1086.57433	1.9375	0.0010546	-2.6426	-0.0014383	-0.70507	-0.00038377	544.2929504190276	87.076	0.61739	87.076	86.888	87.505	0					20	14	2	0	0	0	0.026802	1	9202	9202		26.693	3.6504	1	707730			46338	3862	38396	38418	49776	49776					0.0345065239705491
QNVAPTLTML	10	Unmodified	_QNVAPTLTML_					0	0	0		ENSG00000128011|ENST00000248668|LRFN1	ENSG00000128011|ENST00000248668|LRFN1	ENSG00000128011|ENST00000248668|LRFN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	544.294442	1086.57433	1.3684	0.00074479	-3.0099	-0.0016383	-1.6416	-0.0008935	544.2926061249517	88.464	0.6387	87.096	86.888	87.527	-1.3676	0.053999	-0.00072204	NaN	47.657	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40584			46339	3862	38396	38418							0.0345065239705491
QNVAPTLTML	10	Unmodified	_QNVAPTLTML_					0	0	0		ENSG00000128011|ENST00000248668|LRFN1	ENSG00000128011|ENST00000248668|LRFN1	ENSG00000128011|ENST00000248668|LRFN1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	544.294442	1086.57433	-0.44977	-0.00024481	-1.0421	-0.0005672	-1.4919	-0.00081201	544.2935131425149	89.165	0.64478	87.034	86.846	87.491	-2.1309	-0.0086277	0.0014201	NaN	47.657	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60193			46340	3862	38396	38418							0.0345065239705491
QNVAPTLTML	10	Unmodified	_QNVAPTLTML_					0	0	0		ENSG00000128011|ENST00000248668|LRFN1	ENSG00000128011|ENST00000248668|LRFN1	ENSG00000128011|ENST00000248668|LRFN1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	544.294442	1086.57433	0.14166	7.7103E-05	-1.8389	-0.0010009	-1.6972	-0.00092378	544.2928729371691	89.539	0.49718	86.964	86.801	87.298	-2.575	-0.078525	0.00055277	NaN	47.657	15	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62387			46341	3862	38396	38418							0.0345065239705491
QNVARLPII	9	Unmodified	_QNVARLPII_					0	0	0		ENSG00000204262|ENST00000374866|COL5A2	ENSG00000204262|ENST00000374866|COL5A2	ENSG00000204262|ENST00000374866|COL5A2	MULTI-MSMS	OvCa9_classI_Rep2	2	512.3179931640625	2	512.319109	1022.62366	-1.0601	-0.00054311	0.66174	0.00033902	-0.39836	-0.00020409	512.3193628969464	54.362	1.9918	51.548	51.075	53.067	-2.8139					110	39	4	0	0	0	0.40667	1	3736	3736		51.335	0.14276	1	832500			46342	8963	38397	38419	49777	49777					0.11325728468182206
QNVEDVKVL	9	Unmodified	_QNVEDVKVL_					0	0	0			REV__nc|ENSG00000080644|P32297-3|CHRNA3	REV__nc|ENSG00000080644|P32297-3|CHRNA3	MSMS	OvCa99_classI_Rep5	1	522.2919921875	2	522.290214	1042.56587	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.776	1	56.776	56.276	57.276	0								0	0	0	0.16747	1	4732	4732		58.23	2.7257	1		+		46343	17058	38398	38420	49778	49778					0.04629421752088092
QNVILFLIDP	10	Unmodified	_QNVILFLIDP_					0	0	0			REV__ENST00000318948.6_1_21:16335255-16335369:-|nuORF	REV__ENST00000318948.6_1_21:16335255-16335369:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.8099975585938	2	586.339707	1170.66486	1.0058	0.00058976	-3.1848	-0.0018674	-2.1789	-0.0012776	586.3360916674761	123.55	0.13866	123.55	123.47	123.61	0					4	2	2	0	0	0	0.027028	1	14251	14251		31.53	14.062	1	24300	+		46344	24428	38399	38421	49779	49779					0.08635444716992424
QNVLKIAR	8	Unmodified	_QNVLKIAR_					0	0	0		nc|ENSG00000185842|Q0VDD8|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.2774658203125	2	471.298176	940.581799	1.3704	0.00064585	0.71397	0.00033649	2.0843	0.00098234	471.298406719534	83.554	0.59652	83.554	83.204	83.801	0					20	13	2	0	0	0	0.028476	1	8652	8652		12.207	0	1	176950			46345	15218	38400	38422	49780	49780					0.1091317277964663
QNVPKSPIP	9	Unmodified	_QNVPKSPIP_					0	0	0			REV__ENSG00000204406|ENST00000642680|MBD5	REV__ENSG00000204406|ENST00000642680|MBD5	MULTI-SECPEP	OvCa9_classI_Rep2	2	489.3106994628906	2	490.282192	978.549831	0.19022	9.3263E-05	-0.27558	-0.00013511	-0.08536	-4.185E-05	490.28198786127086	94.975	0.8875	93.876	93.606	94.494	-1.0995					21	17	2	0	0	0	0.027426	1	8539	8539		53.351	9.2347	1	13290	+		46346	23153	38401	38423	49781	49781					0.05969760305856653
QNVRANLI	8	Unmodified	_QNVRANLI_					0	0	0			REV__tr|A0A7D7A2E7|A0A7D7A2E7_9CLOTSporulationpeptidaseYabGOS=ClostridiumintestinaleOX=36845GN=yabGPE=4SV=1	REV__tr|A0A7D7A2E7|A0A7D7A2E7_9CLOTSporulationpeptidaseYabGOS=ClostridiumintestinaleOX=36845GN=yabGPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.2649230957031	2	464.272158	926.529764	-0.96307	-0.00044713	2.0797	0.00096552	1.1166	0.0005184	464.2729809157478	96.01	0.25388	93.584	93.355	93.609	-2.4256					7	4	2	0	0	0	0.028476	1	8445	8445		33.516	1.5607	1	28192	+		46347	32535	38402	38424	49782	49782					0.06356009365902082
QNVRLAAKL	9	Unmodified	_QNVRLAAKL_					0	0	0		tr|A0A7D7AH13|A0A7D7AH13_9CLOTTranscriptiontermination/antiterminationproteinNusAOS=ClostridiumintestinaleOX=36845GN=nusAPE=3SV=1	tr|A0A7D7AH13|A0A7D7AH13_9CLOTTranscriptiontermination/antiterminationproteinNusAOS=ClostridiumintestinaleOX=36845GN=nusAPE=3SV=1	tr|A0A7D7AH13|A0A7D7AH13_9CLOTTranscriptiontermination/antiterminationproteinNusAOS=ClostridiumintestinaleOX=36845GN=nusAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	506.8158264160156	2	506.816733	1011.61891	-0.93251	-0.00047261	0.35454	0.00017969	-0.57797	-0.00029292	506.81667627584164	32.71	0.94407	30.001	29.778	30.722	-2.7097					25	18	2	0	0	0	0.59983	1	1105	1105		31.955	1.4512	1	45472			46348	36270	38403	38425	49783	49783					0.11356844325405291
QNVTRLLRKQ	10	Unmodified	_QNVTRLLRKQ_					0	0	0		ENSG00000198947|ENST00000357033|DMD;nc|ENSG00000198947|P11532|DMD;nc|ENSG00000198947|P11532-11|DMD;nc|ENSG00000198947|P11532-4|DMD;nc|ENSG00000198947|P11532-14|DMD;nc|ENSG00000198947|P11532-17|DMD;nc|ENSG00000198947|P11532-2|DMD;nc|ENSG00000198947|P11532-3|DMD;nc|ENSG00000198947|P11532-12|DMD;nc|ENSG00000198947|P11532-15|DMD;nc|ENSG00000198947|P11532-16|DMD;nc|ENSG00000198947|P11532-13|DMD	ENSG00000198947|ENST00000357033|DMD	ENSG00000198947|ENST00000357033|DMD	MULTI-MSMS	OvCa9_classI_Rep3	3	628.3828125	2	628.383303	1254.75205	-4.0512	-0.0025457	2.8064	0.0017635	-1.2447	-0.00078217	628.3849132400738	150.53	4.7174	149.58	148	152.71	-0.95647					178	94	2	0	0	0	0.73378	1	12793	12793		26.693	1.1189	1	419100			46349	8914	38404	38426	49784	49784					0.1348666371127365
QNVTVVEGGTA	11	Unmodified	_QNVTVVEGGTA_					0	0	0		ENSG00000175161|ENST00000383699|CADM2;nc|ENSG00000175161|Q8N3J6|CADM2;nc|ENSG00000175161|Q8N3J6-3|CADM2	ENSG00000175161|ENST00000383699|CADM2	ENSG00000175161|ENST00000383699|CADM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.8088989257812	2	537.774928	1073.5353	0.082193	4.4201E-05	-0.35324	-0.00018996	-0.27105	-0.00014576	537.7746521693626	32.478	0.63728	32.478	32.303	32.941	0					25	12	4	0	0	0	0.025457	1	1465	1465		29.17	2.4771	1	572920			46350	7520	38405	38427	49785	49785					0.0014764336706321046
QNWAIPGDI	9	Unmodified	_QNWAIPGDI_					0	0	0		ENST00000445118.6_1_1:790287-790512:+|nuORF	ENST00000445118.6_1_1:790287-790512:+|nuORF	ENST00000445118.6_1_1:790287-790512:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.8175964355469	2	507.256174	1012.49779	-0.42598	-0.00021608	1.3165	0.00066778	0.89048	0.0004517	507.2565513138749	53.197	0.30433	53.197	53.043	53.347	0					8	6	2	0	0	0	0.027462	1	4199	4199		35.618	0	1	106020			46351	11970	38406	38428	49786	49786					-0.0079540310792936
QNWDRPSRA	9	Unmodified	_QNWDRPSRA_					0	0	0			REV__ENST00000371926.7_1_10:90639907-90640393:+|nuORF	REV__ENST00000371926.7_1_10:90639907-90640393:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.3145141601562	2	565.278503	1128.54245	1.0382	0.00058686	-1.596	-0.00090216	-0.55779	-0.0003153	565.277124637521	90.585	1.0283	88.01	87.75	88.779	-2.575					26	19	2	0	0	0	0.027426	1	7850	7850		56.721	1.9447	1	71151	+		46352	24992	38407	38429	49787	49787					-0.01667579241848216
QNWDSILLL	9	Unmodified	_QNWDSILLL_					0	0	0			REV__tr|A0A553SM79|A0A553SM79_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22035PE=4SV=1	REV__tr|A0A553SM79|A0A553SM79_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22035PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	551.2981567382812	2	551.300581	1100.58661	1.4681	0.00080935	0.7657	0.00042213	2.2338	0.0012315	551.3008705568828	115.15	3.1895	115.15	114.7	117.88	0					161	68	5	0	0	0	0.28934	1	13203	13203		64.207	0	1	1919600	+		46353	30305	38408	38430	49788	49788					0.04034012131774034
QNWIWDRKQRR	11	Unmodified	_QNWIWDRKQRR_					0	0	0			REV__nc|ENSG00000179776|P33151-2|CDH5	REV__nc|ENSG00000179776|P33151-2|CDH5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.3333740234375	3	529.286802	1584.83858	-0.92295	-0.00048851	-1.9516	-0.001033	-2.8746	-0.0015215	529.2858537142534	58.091	1.0547	54.746	54.546	55.6	-3.3449					26	20	3	0	0	0	0.026302	1	3812	3812		12.433	7.5467	1	290670	+		46354	22140	38409	38431	49789	49789					0.0695504326581613
QNWNGQLSR	9	Unmodified	_QNWNGQLSR_					0	0	0			REV__chr9:21971208-21974599|281|112.27|0.01|14.34|-|0|CDKN2A,None|1	REV__chr9:21971208-21974599|281|112.27|0.01|14.34|-|0|CDKN2A,None|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.8081665039062	2	551.773054	1101.53155	-1.7862	-0.00098558	1.1554	0.00063749	-0.63085	-0.00034809	551.7739379597737	50.064	0.41676	46.922	46.82	47.236	-3.1416					11	7	2	0	0	0	0.027462	1	2882	2882		30.504	20.798	1	20003	+		46355	16124	38410	38432	49790	49790					-0.015149816161510898
QNWRRRGK	8	Unmodified	_QNWRRRGK_					0	0	0			REV__ENST00000471115.5_1_1:85718343-85724278:-|nuORF	REV__ENST00000471115.5_1_1:85718343-85724278:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.7928466796875	2	550.812848	1099.61114	1.1324	0.00062375	2.5113	0.0013833	3.6437	0.002007	550.8145773340771	67.563	1.7692	64.072	63.689	65.459	-3.4902					65	35	3	0	0	0	0.028476	1	4972	4972		33.516	0	1	397600	+		46356	26270	38411	38433	49791	49791					0.06532129848505974
QNYVEEKLI	9	Unmodified	_QNYVEEKLI_					0	0	0		AFF1-UBR5|1|fusion;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	AFF1-UBR5|1|fusion	AFF1-UBR5|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.7810668945312	2	568.303321	1134.59209	1.9455	0.0011056	-0.69491	-0.00039492	1.2506	0.00071071	568.3032713622102	129.15	1.3613	129.15	128.88	130.25	0					52	28	5	0	0	0	0.027411	1	15006	15006		58.23	0	1	606930			46357	45	38412	38434	49792	49792					0.030176909235706262
QPAAAPPR	8	Unmodified	_QPAAAPPR_					0	0	0			REV__ENST00000454558.2_2_2:97203163-97203835:+|nuORF	REV__ENST00000454558.2_2_2:97203163-97203835:+|nuORF	MSMS	OvCa9_classI_Rep3	3	404.23162841796875	2	404.22722	806.439886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	130.8	1	129.68	129.18	130.18	-1.1249								0	0	0	0.30129	1	10394	10394		19.36	1.0356	1		+		46358	26004	38413	38435	49793	49793					0.028923797573156662
QPAAEQLHAGP	11	Unmodified	_QPAAEQLHAGP_					0	0	0		ENSG00000013810|ENST00000313288|TACC3;ENST00000484651.5_1_4:1725148-1739714:+|nuORF	ENSG00000013810|ENST00000313288|TACC3	ENSG00000013810|ENST00000313288|TACC3	MULTI-MSMS	OvCa9_classI_Rep2	2	559.7824096679688	2	559.783087	1117.55162	-0.68858	-0.00038545	0.34583	0.00019359	-0.34275	-0.00019186	559.783083785333	140.27	1.7727	140.04	139.7	141.47	-0.22696					65	35	3	0	0	0	0.69455	1	14027	14027		31.53	1.2121	1	124330			46359	993	38414	38436	49794	49794					-0.0024523067620521033
QPAAWELL	8	Unmodified	_QPAAWELL_					0	0	0		nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-2|UNC80;nc|ENSG00000144406|Q8N2C7-4|UNC80;ENST00000489023.5_1_2:210693994-210832362:+|nuORF	nc|ENSG00000144406|Q8N2C7-7|UNC80	nc|ENSG00000144406|Q8N2C7-7|UNC80	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.7822265625	2	464.25036	926.486168	-1.2967	-0.00060201	-3.1929	-0.0014823	-4.4897	-0.0020843	464.24870905792113	51.984	0.8919	49.171	48.848	49.74	-2.8129					27	17	2	0	0	0	0.028476	1	3486	3486		20.482	0	1	55020			46360	5149	38415	38437	49795	49795					0.01998399868762135
QPADPETKISN	11	Unmodified	_QPADPETKISN_					0	0	0			REV__ENSG00000008516|ENST00000336577|MMP25	REV__ENSG00000008516|ENST00000336577|MMP25	MULTI-MSMS	OvCa9_classI_Rep2	2	600.2975463867188	2	600.298767	1198.58298	0.42593	0.00025569	-0.12322	-7.3969E-05	0.30271	0.00018172	600.2986444844016	66.04	1.7869	63.345	62.872	64.659	-2.6958					108	35	5	0	0	0	0.55686	1	5105	5105		48.602	7.1749	1	817990	+		46361	16458	38416	38438	49796	49796					-0.008367024327526451
QPAFKVLKP	9	Unmodified	_QPAFKVLKP_					0	0	0		ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	ENSG00000171017|ENST00000306708|LRRC8E	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.3017578125	2	514.318577	1026.6226	-0.27275	-0.00014028	-3.8965	-0.0020041	-4.1693	-0.0021443	514.3164730136145	51.138	0.5109	51.138	50.907	51.418	0					24	11	3	0	0	0	0.027462	1	3906	3906		15.642	0	1	291100			46362	7162	38417	38439	49797	49797					0.11035514099285137
QPAILRKL	8	Unmodified	_QPAILRKL_					0	0	0			REV__NFIL3|p.T453P|1|0.09|ENSG00000165030|chr9:91409378-91409378|T/G|missense_variant	REV__NFIL3|p.T453P|1|0.09|ENSG00000165030|chr9:91409378-91409378|T/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	469.75201416015625	2	469.810919	937.607286	0.44153	0.00020743	-1.7739	-0.0008334	-1.3324	-0.00062597	469.80987493305787	68.841	0.78853	65.351	65.113	65.901	-3.4902					24	15	2	0	0	0	0.028476	1	5138	5138		18.324	0.95945	1	61546	+		46363	29250	38418	38440	49798	49798					0.13598647302069367
QPAKLVMVK	9	Unmodified	_QPAKLVMVK_					0	0	0		ENSG00000138658|ENST00000505019|ZGRF1;ENST00000473015.5_1_4:113483525-113509083:-|nuORF	ENSG00000138658|ENST00000505019|ZGRF1	ENSG00000138658|ENST00000505019|ZGRF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.25390625	2	507.312438	1012.61032	-0.45653	-0.00023161	3.4629	0.0017567	3.0063	0.0015251	507.314177438685	55.213	0.25016	55.213	55.064	55.315	0					8	5	2	0	0	0	0.027462	1	4487	4487		42.396	11.892	1	161560			46364	4707	38419	38441	49799	49799					0.10452154364577382
QPAPRPPR	8	Unmodified	_QPAPRPPR_					0	0	0		ENSG00000167671|ENST00000301281|UBXN6	ENSG00000167671|ENST00000301281|UBXN6	ENSG00000167671|ENST00000301281|UBXN6	MULTI-MSMS	OvCa9_classI_Rep2	2	459.7664794921875	2	459.767043	917.519533	0.53849	0.00024758	-2.0643	-0.00094908	-1.5258	-0.0007015	459.7659292423094	31.095	1.0341	28.385	28.199	29.233	-2.7097					35	20	2	0	0	0	0.67745	1	919	919		47.916	7.343	1	85712			46365	6828	38420	38442	49800	49800					0.05747446431314529
QPARDSQTF	9	Unmodified	_QPARDSQTF_					0	0	0			REV__ENST00000462156.1_1_2:231249961-231253449:+|nuORF	REV__ENST00000462156.1_1_2:231249961-231253449:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.7871704101562	2	525.254163	1048.49377	-0.74171	-0.00038958	0.18409	9.6696E-05	-0.55761	-0.00029289	525.2541417621477	41.397	0.57434	41.397	41.149	41.724	0					22	12	2	0	0	0	0.027462	1	2568	2568		47.657	17.154	1	232330	+		46366	22499	38421	38443	49801	49801					-0.02853492601616381
QPATYRAQPS	10	Unmodified	_QPATYRAQPS_					0	0	0		RBM14|p.Q531Pfs*79|1|0.28|ENSG00000239306|chr11:66625467-66625468|-/CA|frameshift_variant;ENSG00000239306|ENST00000310137|RBM14	RBM14|p.Q531Pfs*79|1|0.28|ENSG00000239306|chr11:66625467-66625468|-/CA|frameshift_variant	RBM14|p.Q531Pfs*79|1|0.28|ENSG00000239306|chr11:66625467-66625468|-/CA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	559.7823486328125	2	559.783087	1117.55162	-0.68858	-0.00038545	0.34583	0.00019359	-0.34275	-0.00019186	559.783083785333	140.27	1.7727	140.04	139.7	141.47	-0.22696					65	35	3	0	0	0	0.69073	1	14015	14015		31.53	1.0262	1	124330			46367	9326	38422	38444	49802	49802					-0.0024523067620521033
QPAVEIIRPK	10	Unmodified	_QPAVEIIRPK_					0	0	0			REV__nc|ENSG00000086475|P49903-2|SEPHS1	REV__nc|ENSG00000086475|P49903-2|SEPHS1	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.818603515625	2	575.850773	1149.68699	-1.9789	-0.0011395	-0.95344	-0.00054904	-2.9323	-0.0016886	575.8499827035416	92.877	1.732	90.915	90.56	92.292	-1.9617					49	34	2	0	0	0	0.02676	1	5975	5975		27.047	0	1	27677	+		46368	17149	38423	38445	49803	49803					0.11813669185426079
QPAVWRAL	8	Unmodified	_QPAVWRAL_					0	0	0		ENSG00000171794|ENST00000304477|UTF1	ENSG00000171794|ENST00000304477|UTF1	ENSG00000171794|ENST00000304477|UTF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	469.8059387207031	2	470.771794	939.529036	0.67596	0.00031822	-2.1552	-0.0010146	-1.4792	-0.00069639	470.77016728181957	90.583	0.71909	88.008	87.801	88.52	-2.575					22	13	3	0	0	0	0.028476	1	7796	7796		19.36	0	1	47809			46369	7233	38424	38446	49804	49804					0.056852147168342526
QPAWVAVDE	9	Unmodified	_QPAWVAVDE_					0	0	0		ENST00000482005.5_1_17:61936677-61937556:+|nuORF	ENST00000482005.5_1_17:61936677-61937556:+|nuORF	ENST00000482005.5_1_17:61936677-61937556:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.2803955078125	2	507.748182	1013.48181	-0.63166	-0.00032073	3.6487	0.0018526	3.017	0.0015319	507.74985395384186	77.438	1.0426	75.649	74.894	75.937	-1.7894					46	19	3	0	0	0	0.027462	1	6373	6373		23.042	3.6825	1	370340			46370	12562	38425	38447	49805	49805					-0.024391093448230095
QPCAWEHGL	9	Unmodified	_QPCAWEHGL_					0	0	0			REV__ENST00000401607.6_1_20:34214165-34218368:-|nuORF	REV__ENST00000401607.6_1_20:34214165-34218368:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.2992553710938	2	520.734551	1039.45455	-1.4666	-0.00076372	2.8844	0.001502	1.4178	0.00073829	520.7358745047056	72.052	1.0187	68.596	68.222	69.241	-3.4563					39	20	4	0	0	0	0.027462	1	5518	5518		27.882	3.6795	1	98025	+		46371	25413	38426	38448	49806	49806					-0.06359916156839063
QPCHHGAGPPA	11	Unmodified	_QPCHHGAGPPA_					0	0	0			REV__ENST00000463837.5_1_11:64108158-64108420:+|nuORF	REV__ENST00000463837.5_1_11:64108158-64108420:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3411254882812	2	536.243075	1070.4716	-0.60289	-0.00032329	2.7499	0.0014746	2.147	0.0011513	536.2453582936823	39.537	0.37791	39.537	39.42	39.798	0					14	8	3	0	0	0	0.025853	1	2369	2369		20.947	0	1	217230	+		46372	26137	38427	38449	49807	49807					-0.06081995551039654
QPCLLQISH	9	Unmodified	_QPCLLQISH_					0	0	0		ENST00000574267.1_1_17:19463799-19467910:-|nuORF	ENST00000574267.1_1_17:19463799-19467910:-|nuORF	ENST00000574267.1_1_17:19463799-19467910:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	519.774658203125	2	519.773677	1037.5328	1.2718	0.00066103	-0.71745	-0.00037291	0.55432	0.00028812	519.7732287380198	127.54	1.531	127.31	126.99	128.52	-0.23578					82	30	5	0	0	0	0.40667	1	12511	12511		51.335	1.8939	1	538520			46373	13930	38428	38450	49808	49808					0.015535164283846825
QPDARPKHL	9	Unmodified	_QPDARPKHL_					0	0	0			REV__ENSG00000181085|ENST00000338033|MAPK15	REV__ENSG00000181085|ENST00000338033|MAPK15	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.3195190429688	2	531.296165	1060.57778	-0.41643	-0.00022125	2.823	0.0014998	2.4066	0.0012786	531.2974508374242	33.608	0.43892	33.608	33.434	33.873	0					12	8	2	0	0	0	0.027441	1	1564	1564		49.442	8.6634	1	204620	+		46374	22217	38429	38451	49809	49809					0.04991083285949571
QPDFGAEWGW	10	Unmodified	_QPDFGAEWGW_					0	0	0			REV__nc|ENSG00000151718|Q6AWC2-4|WWC2	REV__nc|ENSG00000151718|Q6AWC2-4|WWC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.8045043945312	2	596.756538	1191.49852	1.8818	0.001123	-2.4786	-0.0014791	-0.59677	-0.00035612	596.754846275734	108.82	0.26024	108.82	108.76	109.02	0					7	5	2	0	0	0	0.027145	1	12329	12329		24.519	21.995	1	134960	+		46375	20250	38430	38452	49810	49810					-0.08956608458856863
QPDKRPTVLS	10	Unmodified	_QPDKRPTVLS_					0	0	0			REV__NLRP12|p.E127K|1|0.24|ENSG00000142405|chr19:53811280-53811280|C/T|missense_variant	REV__NLRP12|p.E127K|1|0.24|ENSG00000142405|chr19:53811280-53811280|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	570.8216552734375	2	570.822212	1139.62987	-1.1076	-0.00063223	-0.082127	-4.688E-05	-1.1897	-0.00067911	570.8223947094398	83.611	2.5243	82.012	81.415	83.939	-1.5988					150	50	5	0	0	0	0.42082	3	7183	7157;7183;7194		65.465	3.5297	1	939080	+		46376	19784	38431	38453	49811;49812;49813	49812					0.06564201909031908
QPDKRPTVLS	10	Unmodified	_QPDKRPTVLS_					0	0	0			REV__NLRP12|p.E127K|1|0.24|ENSG00000142405|chr19:53811280-53811280|C/T|missense_variant	REV__NLRP12|p.E127K|1|0.24|ENSG00000142405|chr19:53811280-53811280|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	570.8228149414062	2	570.822212	1139.62987	-1.4032	-0.00080099	0.31116	0.00017762	-1.0921	-0.00062337	570.8225609125153	84.075	2.0116	81.814	81.434	83.445	-2.261					125	41	4	0	0	0	0.53807	2	4885	4838;4885		49.536	4.5138	1	2084000	+		46377	19784	38431	38453	49814;49815	49815					0.06564201909031908
QPDKRPTVLS	10	Unmodified	_QPDKRPTVLS_					0	0	0			REV__NLRP12|p.E127K|1|0.24|ENSG00000142405|chr19:53811280-53811280|C/T|missense_variant	REV__NLRP12|p.E127K|1|0.24|ENSG00000142405|chr19:53811280-53811280|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	570.8231811523438	2	570.822212	1139.62987	1.0448	0.00059642	-1.9635	-0.0011208	-0.91869	-0.00052441	570.8212343162634	84.622	2.0327	81.959	81.594	83.627	-2.6629					120	41	4	0	0	0	0.35539	2	7082	7072;7082		74.165	8.7575	1	1805900	+		46378	19784	38431	38453	49816;49817	49817					0.06564201909031908
QPDLPSLAP	9	Unmodified	_QPDLPSLAP_					0	0	0		HIVEP3|p.N1990Tfs*198|1|0.66|ENSG00000127124|chr1:41513252-41513252|T/-|frameshift_variant;nc|ENSG00000127124|Q5T1R4-2|HIVEP3;ENSG00000127124|ENST00000372583|HIVEP3	HIVEP3|p.N1990Tfs*198|1|0.66|ENSG00000127124|chr1:41513252-41513252|T/-|frameshift_variant	HIVEP3|p.N1990Tfs*198|1|0.66|ENSG00000127124|chr1:41513252-41513252|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	469.2767333984375	2	469.2531	936.491647	-0.668	-0.00031346	0.53686	0.00025192	-0.13114	-6.1539E-05	469.25315503713307	76.814	1.1964	75.024	74.478	75.675	-1.7894					36	22	2	0	0	0	0.027462	1	6439	6439		44.117	1.7207	1	70412			46379	3819	38432	38454	49818	49818					0.020860786605680914
QPDLPSLAP	9	Unmodified	_QPDLPSLAP_					0	0	0		HIVEP3|p.N1990Tfs*198|1|0.66|ENSG00000127124|chr1:41513252-41513252|T/-|frameshift_variant;nc|ENSG00000127124|Q5T1R4-2|HIVEP3;ENSG00000127124|ENST00000372583|HIVEP3	HIVEP3|p.N1990Tfs*198|1|0.66|ENSG00000127124|chr1:41513252-41513252|T/-|frameshift_variant	HIVEP3|p.N1990Tfs*198|1|0.66|ENSG00000127124|chr1:41513252-41513252|T/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	469.2531	936.491647	0.25501	0.00011967	-0.090354	-4.2399E-05	0.16466	7.7267E-05	469.25291921460484	77.726	0.87297	74.91	74.681	75.554	-2.8165	-0.057402	-0.00027457	NaN	40.778	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207460			46380	3819	38432	38454							0.020860786605680914
QPDQTRIVAL	10	Unmodified	_QPDQTRIVAL_					0	0	0		ENSG00000105202|ENST00000221801|FBL;DNAJB6-FBL|1|fusion	ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	MULTI-MSMS	OvCa9_classI_Rep2	2	570.8212890625	2	570.822212	1139.62987	-1.1076	-0.00063223	-0.082127	-4.688E-05	-1.1897	-0.00067911	570.8223947094398	83.611	2.5243	82.012	81.415	83.939	-1.5988					150	50	5	0	0	0	0.49558	1	7140	7140		54.776	5.3348	1	939080			46381	2429	38433	38455	49819	49819					0.06564201909031908
QPDQTRIVAL	10	Unmodified	_QPDQTRIVAL_					0	0	0		ENSG00000105202|ENST00000221801|FBL;DNAJB6-FBL|1|fusion	ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	MULTI-MSMS	OvCa9_classI_Rep3	3	570.8233642578125	2	570.822212	1139.62987	-1.4032	-0.00080099	0.31116	0.00017762	-1.0921	-0.00062337	570.8225609125153	84.075	2.0116	81.814	81.434	83.445	-2.261					125	41	4	0	0	0	0.10472	3	4843	4843;4848;4891		112.41	21.146	1	2084000			46382	2429	38433	38455	49820;49821;49822	49820					0.06564201909031908
QPDQTRIVAL	10	Unmodified	_QPDQTRIVAL_					0	0	0		ENSG00000105202|ENST00000221801|FBL;DNAJB6-FBL|1|fusion	ENSG00000105202|ENST00000221801|FBL	ENSG00000105202|ENST00000221801|FBL	MULTI-MSMS	OvCa9_classI_Rep4_	4	570.8231811523438	2	570.822212	1139.62987	1.0448	0.00059642	-1.9635	-0.0011208	-0.91869	-0.00052441	570.8212343162634	84.622	2.0327	81.959	81.594	83.627	-2.6629					120	41	4	0	0	0	0.53807	1	7151	7151		49.536	8.1094	1	1805900			46383	2429	38433	38455	49823	49823					0.06564201909031908
QPEADAESDL	10	Unmodified	_QPEADAESDL_					0	0	0			REV__nc|ENSG00000132481|Q96LD4-2|TRIM47	REV__nc|ENSG00000132481|Q96LD4-2|TRIM47	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.7694091796875	2	537.732926	1073.4513	-0.75926	-0.00040828	-0.72058	-0.00038748	-1.4798	-0.00079576	537.7322214949287	36.385	0.13806	36.385	36.304	36.442	0					4	2	2	0	0	0	0.026994	1	1906	1906		25.574	1.3713	1	29578	+		46384	19083	38434	38456	49824	49824					-0.08248932520518792
QPEGEAGVGVE	11	Unmodified	_QPEGEAGVGVE_					0	0	0		ENSG00000204531|ENST00000259915|POU5F1	ENSG00000204531|ENST00000259915|POU5F1	ENSG00000204531|ENST00000259915|POU5F1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3123168945312	2	536.251286	1070.48802	-0.34251	-0.00018367	2.4844	0.0013323	2.1419	0.0011486	536.2528282001862	50.929	0.21635	50.929	50.819	51.036	0					5	4	2	0	0	0	0.025701	1	3898	3898		36.447	10.873	1	74414			46385	8997	38435	38457	49825	49825					-0.04440635903938528
QPELFGALLL	10	Unmodified	_QPELFGALLL_					0	0	0			REV__nc|ENSG00000149131|P05155-3|SERPING1	REV__nc|ENSG00000149131|P05155-3|SERPING1	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.2981567382812	2	550.82115	1099.62775	1.9457	0.0010718	-3.6573	-0.0020145	-1.7115	-0.00094274	550.8190126116427	115.47	0.92855	115.47	115.16	116.09	0					48	19	3	0	0	0	0.026582	1	13203	13203		51.335	0	1	717550	+	+	46386	28921	38436	38458	49826	49826					0.08191773171233763
QPELPTDPE	9	Unmodified	_QPELPTDPE_					0	0	0		nc|ENSG00000100034|P49593-2|PPM1F;ENSG00000100034|ENST00000263212|PPM1F;PPM1F|p.F362Rfs*82|1|0.79|ENSG00000100034|chr22:21923364-21923374|CGTCAAAGAAG/-|frameshift_variant	nc|ENSG00000100034|P49593-2|PPM1F	nc|ENSG00000100034|P49593-2|PPM1F	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.7814331054688	2	513.242929	1024.47131	-2.219	-0.0011389	-0.63111	-0.00032391	-2.8501	-0.0014628	513.2426351797163	49.745	0.7273	46.603	46.352	47.079	-3.1416					21	13	2	0	0	0	0.027461	1	2824	2824		49.442	10.189	1	40611			46387	1999	38437	38459	49827	49827					-0.03995136789922071
QPEPFWGR	8	Unmodified	_QPEPFWGR_					0	0	0			REV__nc|ENSG00000204290|Q9UIR0-1|BTNL2	REV__nc|ENSG00000204290|Q9UIR0-1|BTNL2	MULTI-MSMS	OvCa99_classI_Rep5	1	508.7490539550781	2	508.751059	1015.48756	-0.45881	-0.00023342	-3.7158	-0.0018904	-4.1746	-0.0021238	508.74904280747967	35.266	0.74692	35.266	35.052	35.799	0					26	15	3	0	0	0	0.6962	1	1762	1762		44.117	4.0586	1	515520	+		46388	23139	38438	38460	49828	49828					-0.019559660424761205
QPEPRRRV	8	Unmodified	_QPEPRRRV_					0	0	0			REV__nc|ENSG00000114279|P61328|FGF12	REV__nc|ENSG00000114279|P61328|FGF12	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2769775390625	2	519.301781	1036.58901	-0.67408	-0.00035005	0.58145	0.00030195	-0.092627	-4.8102E-05	519.3018820090953	23.236	0.45381	23.236	23.093	23.547	0					11	8	2	0	0	0	0.028476	1	312	312		31.955	0	1	76948	+		46389	28805	38439	38461	49829	49829					0.07217905380093725
QPESILIVLLN	11	Unmodified	_QPESILIVLLN_					0	0	0			REV__XPOT-C12orf56|2|fusion	REV__XPOT-C12orf56|2|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8698120117188	2	619.871371	1237.72819	-2.7857	-0.0017268	-0.3761	-0.00023313	-3.1618	-0.0019599	619.8709153162803	147.4	3.9416	146.45	144.36	148.3	-0.9512					241	78	4	0	0	0	0.69455	1	12433	12433		31.53	9.5699	1	225770	+		46390	22493	38440	38462	49830	49830					0.11883385434248339
QPEWYVGAPV	10	Unmodified	_QPEWYVGAPV_					0	0	0		nc|ENSG00000114650|Q12770-3|SCAP;ENSG00000114650|ENST00000265565|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	MULTI-SECPEP	OvCa9_classI_Rep2	2	572.2861938476562	2	573.284931	1144.55531	-1.5282	-0.00087609	-4.4265	-0.0025376	-5.9547	-0.0034137	573.2815631034647	32.71	0.39475	30.001	29.877	30.272	-2.7097					11	7	2	0	0	0	0.026802	1	1120	1120		42.396	5.9494	1	16374			46391	3031	38441	38463	49831	49831					-0.011185609023414145
QPFAKLLPK	9	Unmodified	_QPFAKLLPK_					0	0	0			REV__chr19:3976709-3981339|159|231.28|0.44|9.04|-|0|None,EEF2|1	REV__chr19:3976709-3981339|159|231.28|0.44|9.04|-|0|None,EEF2|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.2393188476562	2	521.326402	1040.63825	1.3586	0.00070827	3.9369	0.0020524	5.2955	0.0027607	521.3282615733357	128.36	1.0749	128.36	128.09	129.17	0					29	13	3	0	0	0	0.027343	1	14912	14912		68.787	7.8149	1	355060	+		46392	15977	38442	38464	49832	49832					0.11955800616328816
QPFDLSRTK	9	Unmodified	_QPFDLSRTK_					0	0	0			REV__ENSG00000151304|ENST00000339397|SRFBP1	REV__ENSG00000151304|ENST00000339397|SRFBP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.842529296875	2	546.29583	1090.57711	-0.65371	-0.00035712	2.7876	0.0015228	2.1339	0.0011657	546.2970126170555	42.457	1.8846	42.457	42.024	43.909	0					56	43	2	0	0	0	0.027462	1	2860	2860		23.042	7.4007	1	278000	+		46393	20222	38443	38465	49833	49833					0.03544243846226891
QPFDNLVSELL	11	Unmodified	_QPFDNLVSELL_					0	0	0			REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	MULTI-MSMS	OvCa9_classI_Rep4_	4	637.8374633789062	2	637.834985	1273.65542	0.19816	0.00012639	2.8027	0.0017876	3.0008	0.001914	637.8366446952049	143.24	1.6233	141.79	141.1	142.72	-1.4427					79	31	3	0	0	0	0.6112	1	13946	13946		43.651	1.3127	1	134760	+		46394	16748	38444	38466	49834	49834					0.02953631640821186
QPFPDDHSAC	10	Unmodified	_QPFPDDHSAC_					0	0	0		ENSG00000223611|ENST00000486479|SUPT20HL2;nc|ENSG00000223731|Q3ZLR7|SUPT20HL1;ENSG00000223731|ENST00000686983|SUPT20HL1	ENSG00000223611|ENST00000486479|SUPT20HL2	ENSG00000223611|ENST00000486479|SUPT20HL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.82373046875	2	558.724381	1115.43421	-0.42903	-0.00023971	-3.3192	-0.0018545	-3.7483	-0.0020942	558.7224313601748	34.892	0.42363	34.892	34.725	35.149	0					19	8	4	0	0	0	0.026752	1	1720	1720		27.882	12.24	1	90219			46395	9251	38445	38467	49835	49835					-0.11889131607313175
QPGAGREAAGM	11	Unmodified	_QPGAGREAAGM_					0	0	0			REV__nc|ENSG00000232237|Q7RTU5|ASCL5	REV__nc|ENSG00000232237|Q7RTU5|ASCL5	MULTI-MSMS	OvCa9_classI_Rep2	2	522.751953125	2	522.74819	1043.48183	3.376	0.0017648	3.5109	0.0018353	6.8869	0.0036001	522.7498693889222	26.205	1.4035	23.495	23.207	24.61	-2.7097					77	38	3	0	0	0	0.58572	1	364	364		45.972	8.8131	1	431350	+		46396	29148	38446	38468	49836	49836					-0.03817432616483529
QPGGKRLLQ	9	Unmodified	_QPGGKRLLQ_					0	0	0		ENST00000464034.5_1_22:24179058-24179882:-|nuORF;ENST00000464110.1_1_22:24179249-24180975:-|nuORF;nc|ENSG00000099958|Q96Q80-5|DERL3;nc|ENSG00000099958|Q96Q80-3|DERL3;ENSG00000099958|ENST00000318109|DERL3;nc|ENSG00000099958|Q96Q80-2|DERL3	ENST00000464034.5_1_22:24179058-24179882:-|nuORF	ENST00000464034.5_1_22:24179058-24179882:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.8002624511719	2	498.801083	995.587613	-1.4377	-0.00071715	0.77807	0.0003881	-0.65968	-0.00032905	498.8014440110007	51.637	2.1267	48.824	48.353	50.48	-2.8129					131	42	5	0	0	0	0.34496	1	3376	3376		57.811	0	1	2284200			46397	1989	38447	38469	49837	49837					0.0896427129133599
QPGIFNYATR	10	Unmodified	_QPGIFNYATR_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8016967773438	2	583.80128	1165.58801	0.97841	0.0005712	1.9394	0.0011322	2.9178	0.0017034	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.79917	1	1363	1363		19.104	3.4617	1	155970			46398	8571	38448	38470	49838	49838					0.011836462205110365
QPGKKELH	8	Unmodified	_QPGKKELH_					0	0	0			REV__ENST00000510488.1_1_3:141190162-141190471:-|nuORF	REV__ENST00000510488.1_1_3:141190162-141190471:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	468.7664489746094	2	468.766709	935.518865	-0.70293	-0.00032951	1.3477	0.00063174	0.64474	0.00030223	468.766975475267	42.021	0.30172	42.021	41.766	42.068	0					11	6	2	0	0	0	0.56113	1	2659	2659		71.378	4.9486	1	722430	+	+	46399	26942	38449	38471	49839	49839					0.048526069916078995
QPGKRPRPG	9	Unmodified	_QPGKRPRPG_					0	0	0			REV__nc|ENSG00000154222|Q5T0F9-5|CC2D1B	REV__nc|ENSG00000154222|Q5T0F9-5|CC2D1B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.75482177734375	2	496.79105	991.567546	0.10156	5.0454E-05	1.2134	0.00060282	1.315	0.00065328	496.7918714016738	115.9	1.0395	114.51	113.98	115.02	-1.3886					25	20	2	0	0	0	0.027462	1	10788	10788		30.504	6.3009	1	51652	+		46400	20368	38450	38472	49840	49840					0.07142520351362691
QPGLILLSV	9	Unmodified	_QPGLILLSV_					0	0	0			REV__ENSG00000186806|ENST00000335624|VSIG10L	REV__ENSG00000186806|ENST00000335624|VSIG10L	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.2957763671875	2	470.29731	938.580068	0.42479	0.00019978	-3.8931	-0.0018309	-3.4683	-0.0016311	470.29547904277877	21.564	1.9538	20.226	19.77	21.724	-1.3386					105	43	5	0	0	0	0.67509	1	241	241		23.042	2.5607	1	1545000	+		46401	22611	38451	38473	49841	49841					0.10832118971040927
QPGLLPLPTGP	11	Unmodified	_QPGLLPLPTGP_					0	0	0		ENST00000542466.2_1_12:58120972-58121218:+|nuORF	ENST00000542466.2_1_12:58120972-58121218:+|nuORF	ENST00000542466.2_1_12:58120972-58121218:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	545.316650390625	2	545.318774	1088.623	-2.8527	-0.0015556	-0.96726	-0.00052747	-3.8199	-0.0020831	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.71191	1	11909	11909		25.574	0	1	337600			46402	13480	38452	38474	49842	49842					0.08222889028456848
QPGLRRTYRSM	11	Unmodified	_QPGLRRTYRSM_					0	0	0			REV__ENST00000392852.7_1_11:118512280-118516420:+|nuORF	REV__ENST00000392852.7_1_11:118512280-118516420:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	455.26727294921875	3	455.578705	1363.71429	0.44122	0.00020101	2.8862	0.0013149	3.3274	0.0015159	455.57989516878376	61.629	0.55998	58.172	58.01	58.57	-3.4577					19	11	2	0	0	0	0.02625	1	4229	4229		13.508	0	1	65229	+		46403	25268	38453	38475	49843	49843					0.046978294541531795
QPGLVTPR	8	Unmodified	_QPGLVTPR_					0	0	0		ENSG00000085999|ENST00000371975|RAD54L;ENST00000493032.5_1_1:46714192-46726402:+|nuORF;ENST00000487700.1_1_1:46714192-46733228:+|nuORF;ENST00000463715.5_3_1:46714207-46726591:+|nuORF;RAD54L|p.F163Lfs*21|1|0.2|ENSG00000085999|chr1:46260737-46260738|-/G|frameshift_variant	ENSG00000085999|ENST00000371975|RAD54L	ENSG00000085999|ENST00000371975|RAD54L	MULTI-MSMS	OvCa9_classI_Rep2	2	434.2561950683594	2	434.255977	866.497401	-1.6226	-0.00070463	2.276	0.00098837	0.65339	0.00028374	434.25691311912357	37.956	1.2325	35.246	34.781	36.013	-2.7097					43	24	3	0	0	0	0.73494	1	1740	1740		34.173	0.65696	1	109840			46404	1745	38454	38476	49844	49844					0.05881221962897598
QPGMQVILLSR	11	Unmodified	_QPGMQVILLSR_					0	0	0			REV__nc|ENSG00000196218|P21817-3|RYR1	REV__nc|ENSG00000196218|P21817-3|RYR1	MULTI-MSMS	OvCa9_classI_Rep2	2	414.571044921875	3	414.572669	1240.69618	-0.18545	-7.6882E-05	-2.5503	-0.0010573	-2.7357	-0.0011342	414.5715900774845	67.622	1.8304	64.961	64.545	66.375	-2.661					91	36	4	0	0	0	0.70587	1	5286	5286		27.644	1.5805	1	490760	+		46405	22801	38455	38477	49845	49845					0.08545694479425947
QPGPIGPF	8	Unmodified	_QPGPIGPF_					0	0	0			REV__COL22A1|p.L1577F|1|0.06|ENSG00000169436|chr8:138589405-138589405|G/A|missense_variant	REV__COL22A1|p.L1577F|1|0.06|ENSG00000169436|chr8:138589405-138589405|G/A|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	406.7200927734375	2	406.718696	811.422839	0.679	0.00027616	0.078497	3.1926E-05	0.7575	0.00030809	406.7185668331598	69.582	1.3336	69.582	69.347	70.681	0					68	32	4	0	0	0	0.74361	1	6620	6620		29.842	0	1	7274100	+		46406	16163	38456	38478	49846	49846					0.009584591515249485
QPGRRLLLQP	10	Unmodified	_QPGRRLLLQP_					0	0	0			REV__ENST00000373365.4_1_6:38654706-38670885:-|nuORF	REV__ENST00000373365.4_1_6:38654706-38670885:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.3211059570312	2	589.361839	1176.70913	0.45549	0.00026845	0.055892	3.294E-05	0.51138	0.00030139	589.3616995621076	72.483	0.2002	72.483	72.374	72.574	0					8	4	2	0	0	0	0.026802	1	7056	7056		26.693	0	1	138640	+		46407	25038	38457	38479	49847	49847					0.12783893653841005
QPGWPSGAAF	10	Unmodified	_QPGWPSGAAF_					0	0	0			REV__ENST00000294309.7_2_11:68855463-68855787:+|nuORF	REV__ENST00000294309.7_2_11:68855463-68855787:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.81524658203125	2	509.243067	1016.47158	-0.72401	-0.0003687	-3.1226	-0.0015902	-3.8466	-0.0019589	509.24161420546096	75.466	1.0814	73.612	73.015	74.096	-1.854					31	20	2	0	0	0	0.026822	1	6153	6153		30.504	15.84	1	30401	+		46408	24182	38458	38480	49848	49848					-0.035996722793811387
QPHAEGGSEH	10	Unmodified	_QPHAEGGSEH_					0	0	0			REV__ENST00000540479.5_1_15:68486446-68491940:-|nuORF	REV__ENST00000540479.5_1_15:68486446-68491940:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	524.7249755859375	2	524.725769	1047.43699	-0.56047	-0.00029409	0.61382	0.00032209	0.053347	2.7993E-05	524.7260088029487	23.137	0.55625	23.137	22.94	23.497	0					26	10	4	0	0	0	0.73378	1	313	313		26.693	1.2427	1	559250	+		46409	27349	38459	38481	49849	49849					-0.08483540158135838
QPHLKEGLTL	10	Unmodified	_QPHLKEGLTL_					0	0	0			REV__ENST00000591001.5_1_19:19380864-19381110:-|nuORF	REV__ENST00000591001.5_1_19:19380864-19381110:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.2421264648438	2	568.327131	1134.63971	0.074984	4.2615E-05	-1.0888	-0.00061879	-1.0138	-0.00057617	568.3266212448732	61.039	0.4263	61.039	60.73	61.156	0					11	9	2	0	0	0	0.027028	1	5344	5344		31.53	4.8369	1	185110	+		46410	27925	38460	38482	49850	49850					0.07777389914417654
QPIEGGPVSL	10	Unmodified	_QPIEGGPVSL_					0	0	0		ENSG00000132704|ENST00000361516|FCRL2;ENST00000462774.1_1_1:157739644-157746863:-|nuORF	ENSG00000132704|ENST00000361516|FCRL2	ENSG00000132704|ENST00000361516|FCRL2	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.7713928222656	2	498.771657	995.528761	-0.30917	-0.00015421	0.14144	7.0548E-05	-0.16773	-8.3658E-05	498.77154537891454	39.217	1.4916	36.29	35.799	37.291	-2.9264					61	29	3	0	0	0	0.19075	1	1592	1592		95.815	8.0609	1	232330			46411	4167	38461	38483	49851	49851					0.030817502063428037
QPIEGGPVSL	10	Unmodified	_QPIEGGPVSL_					0	0	0		ENSG00000132704|ENST00000361516|FCRL2;ENST00000462774.1_1_1:157739644-157746863:-|nuORF	ENSG00000132704|ENST00000361516|FCRL2	ENSG00000132704|ENST00000361516|FCRL2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	498.771657	995.528761	-1.1444	-0.00057081	1.7044	0.00085012	0.55999	0.00027931	498.77195421906913	39.12	1.1867	36.41	35.865	37.052	-2.7097	0.0599	0.0014327	NaN	95.815	45	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49495			46412	4167	38461	38483							0.030817502063428037
QPIFCGRALL	10	Unmodified	_QPIFCGRALL_					0	0	0			REV__ENST00000571370.1_1_17:7589196-7589379:-|nuORF	REV__ENST00000571370.1_1_17:7589196-7589379:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.268798828125	2	559.312969	1116.61138	1.3466	0.00075318	1.2659	0.00070806	2.6126	0.0014612	559.3126774439878	132.21	1.5957	132.21	131.06	132.65	0					70	33	3	0	0	0	0.026915	1	15416	15416		35.618	12.576	1	179890	+		46413	27742	38462	38484	49852	49852					0.05774368733477786
QPIHKPVIVP	10	Unmodified	_QPIHKPVIVP_					0	0	0			REV__ENST00000487002.1_1_1:155279413-155279551:+|nuORF	REV__ENST00000487002.1_1_1:155279413-155279551:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.3500366210938	2	564.350409	1126.68626	4.1129	0.0023211	-4.0298	-0.0022742	0.083108	4.6902E-05	564.3480453729909	135.01	0.98935	133.46	133.16	134.15	-1.5437					39	19	3	0	0	0	0.72319	1	13064	13064		27.882	1.0861	1	69216	+		46414	26595	38463	38485	49853	49853					0.12798874536360927
QPIKKKIPK	9	Unmodified	_QPIKKKIPK_					0	0	0		ENST00000605105.5_1_3:10334350-10334509:+|nuORF	ENST00000605105.5_1_3:10334350-10334509:+|nuORF	ENST00000605105.5_1_3:10334350-10334509:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	540.31396484375	2	540.368601	1078.72265	0.4557	0.00024625	-1.1947	-0.0006456	-0.73903	-0.00039935	540.3679612392492	87.279	0.69309	85.848	85.642	86.335	-1.4311					19	13	2	0	0	0	0.027462	1	7601	7601		44.117	0	1	18288			46415	14268	38464	38486	49854	49854					0.18643751433046418
QPIKKKIPK	9	Unmodified	_QPIKKKIPK_					0	0	0		ENST00000605105.5_1_3:10334350-10334509:+|nuORF	ENST00000605105.5_1_3:10334350-10334509:+|nuORF	ENST00000605105.5_1_3:10334350-10334509:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	540.368601	1078.72265	0.13943	7.5346E-05	-0.25898	-0.00013994	-0.11954	-6.4597E-05	540.3683452052227	88.217	0.55836	86.086	85.854	86.413	-2.1309	0.091919	-0.00043962	NaN	44.117	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28723			46416	14268	38464	38486							0.18643751433046418
QPILLLKGKGS	11	Unmodified	_QPILLLKGKGS_					0	0	0			REV__ENSG00000163872|ENST00000305135|YEATS2	REV__ENSG00000163872|ENST00000305135|YEATS2	MULTI-MSMS	OvCa9_classI_Rep3	3	577.36669921875	2	577.368798	1152.72304	-7.5995	-0.0043877	4.078	0.0023545	-3.5215	-0.0020332	577.3709835310325	161.44	1.2472	160.07	159.69	160.93	-1.3692					76	25	4	0	0	0	0.72485	1	14045	14045		17.468	0	1	379650	+		46417	20903	38465	38487	49855	49855					0.15279126362293027
QPILRFLQL	9	Unmodified	_QPILRFLQL_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ARL8B-ITPR1|2|fusion;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ARL8B-ITPR1|4|fusion;ARL8B-ITPR1|5|fusion;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1;ITPR3|p.V2611Afs*24|1|0.09|ENSG00000096433|chr6:33694969-33694970|-/CC|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3	ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-7|ITPR1;ITPR3|p.V2611Afs*24|1|0.09|ENSG00000096433|chr6:33694969-33694970|-/CC|frameshift_variant	nc|ENSG00000150995|Q14643-7|ITPR1	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.3516845703125	2	564.350409	1126.68626	4.1129	0.0023211	-4.0298	-0.0022742	0.083108	4.6902E-05	564.3480453729909	135.01	0.98935	133.46	133.16	134.15	-1.5437					39	19	3	0	0	0	0.61208	1	13088	13088		30.504	2.6214	1	69216			46418	3571;5526;1948	38466	38488	49856	49856					0.12798874536383664
QPISSLDPEP	10	Unmodified	_QPISSLDPEP_					0	0	0			REV__ENST00000473515.5_1_6:108067761-108070999:-|nuORF	REV__ENST00000473515.5_1_6:108067761-108070999:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	541.7728881835938	2	541.771854	1081.52915	0.86069	0.0004663	1.7793	0.00096395	2.64	0.0014303	541.7727087160803	131.94	0.46704	131.94	131.76	132.23	0					15	9	2	0	0	0	0.6104	1	15331	15331		40.778	0.20554	1	115540	+		46419	20007	38467	38489	49857	49857					-0.0083487486449485
QPIVKPLRCI	10	Unmodified	_QPIVKPLRCI_					0	0	0			REV__ENST00000389622.6_1_3:97596741-97596864:+|nuORF	REV__ENST00000389622.6_1_3:97596741-97596864:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.8240966796875	2	583.857544	1165.70053	-2.0172	-0.0011778	-3.2303	-0.001886	-5.2475	-0.0030638	583.8552618243798	104.39	0.38752	104.39	104.15	104.54	0					18	8	3	0	0	0	0.026915	1	11683	11683		27.882	0	1	295970	+		46420	25230	38468	38490	49858	49858					0.12431203693017778
QPIVRALAK	9	Unmodified	_QPIVRALAK_					0	0	0			REV__ENSG00000135773|ENST00000271971|CAPN9	REV__ENSG00000135773|ENST00000271971|CAPN9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.25640869140625	2	498.321651	994.62875	-0.93656	-0.00046671	1.2995	0.00064756	0.36292	0.00018085	498.32168314649635	70.292	0.2471	66.811	66.589	66.836	-3.4812					6	4	2	0	0	0	0.027462	1	5301	5301		16.473	0	1	12520	+		46421	19321	38469	38491	49859	49859					0.1312203233078435
QPIVSRARP	9	Unmodified	_QPIVSRARP_					0	0	0		nc|ENSG00000196218|P21817-3|RYR1;nc|ENSG00000196218|P21817-2|RYR1;ENSG00000196218|ENST00000359596|RYR1	nc|ENSG00000196218|P21817-3|RYR1	nc|ENSG00000196218|P21817-3|RYR1	MULTI-MSMS	OvCa99_classI_Rep5	1	512.3072509765625	2	512.306532	1022.59851	0.56102	0.00028741	0.95679	0.00049017	1.5178	0.00077758	512.3067523195581	74.304	0.49992	74.304	74.135	74.635	0					23	12	3	0	0	0	0.40667	1	7346	7346		51.335	3.6781	1	2110400			46422	8578	38470	38492	49860	49860					0.08811673665604758
QPKKLNVK	8	Unmodified	_QPKKLNVK_					0	0	0			REV__ENSG00000066651|ENST00000334379|TRMT11;REV__nc|ENSG00000066651|Q7Z4G4-3|TRMT11	REV__ENSG00000066651|ENST00000334379|TRMT11	MULTI-MSMS	OvCa9_classI_Rep2	2	477.8082275390625	2	477.808377	953.6022	-2.2806	-0.0010897	2.086	0.00099673	-0.19457	-9.2967E-05	477.80923760882655	37.498	1.0346	34.788	34.534	35.568	-2.7097					41	20	3	0	0	0	0.73626	1	1691	1691		33.516	0	1	138380	+		46423	16820;28725	38471	38493	49861	49861					0.12354343439460536
QPKKLNVK	8	Unmodified	_QPKKLNVK_					0	0	0			REV__ENSG00000066651|ENST00000334379|TRMT11;REV__nc|ENSG00000066651|Q7Z4G4-3|TRMT11	REV__ENSG00000066651|ENST00000334379|TRMT11	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.8080749511719	2	477.808377	953.6022	1.0264	0.00049042	-1.5216	-0.00072704	-0.49522	-0.00023662	477.80742981999833	37.517	1.441	34.624	34.343	35.784	-2.8925					80	28	4	0	0	0	0.67745	1	1412	1412		47.916	0	1	427420	+		46424	16820;28725	38471	38493	49862	49862					0.12354343439460536
QPKLEKCGV	9	Unmodified	_QPKLEKCGV_					0	0	0			REV__ENST00000412565.2_3_14:24024951-24025206:-|nuORF	REV__ENST00000412565.2_3_14:24024951-24025206:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.76397705078125	2	501.276052	1000.53755	-0.71356	-0.00035769	4.3311	0.0021711	3.6175	0.0018134	501.27817275630554	36.218	0.76669	36.218	36.029	36.796	0					25	16	3	0	0	0	0.027455	1	1871	1871		34.173	5.023	1	272590	+		46425	25497	38472	38494	49863	49863					0.03730400571157588
QPKPHALGR	9	Unmodified	_QPKPHALGR_					0	0	0		ENSG00000177459|ENST00000318528|ERICH5	ENSG00000177459|ENST00000318528|ERICH5	ENSG00000177459|ENST00000318528|ERICH5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.2641906738281	2	502.293425	1002.5723	-0.6449	-0.00032393	-0.72545	-0.00036439	-1.3703	-0.00068832	502.2931444543838	39.4	0.84398	36.473	36.246	37.09	-2.9264					27	16	3	0	0	0	0.027462	1	1635	1635		47.916	17.412	1	121540			46426	7682	38473	38495	49864	49864					0.07111404494128237
QPKPKIKRASD	11	Unmodified	_QPKPKIKRASD_					0	0	0			REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	MULTI-MSMS	OvCa99_classI_Rep5	1	634.3782958984375	2	634.377686	1266.74082	0.70958	0.00045014	-0.81179	-0.00051498	-0.10221	-6.4838E-05	634.3769097150116	164.24	2.8363	164.24	163	165.84	0					295	106	3	0	0	0	0.70865	1	19188	19188		26.693	0	1	532610	+		46427	16668	38474	38496	49865	49865					0.11811841617145546
QPKPLVSPSF	10	Unmodified	_QPKPLVSPSF_					0	0	0			REV__nc|ENSG00000139144|O75747-2|PIK3C2G	REV__nc|ENSG00000139144|O75747-2|PIK3C2G	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.33154296875	2	550.310949	1098.60735	2.4018	0.0013217	-3.4598	-0.0019039	-1.0579	-0.00058219	550.308938819603	75.436	0.59219	75.436	75.209	75.801	0					18	14	2	0	0	0	0.027028	1	7519	7519		31.53	3.2755	1	370760	+		46428	19590	38475	38497	49866	49866					0.06198602511426543
QPKPLVSPSF	10	Unmodified	_QPKPLVSPSF_					0	0	0			REV__nc|ENSG00000139144|O75747-2|PIK3C2G	REV__nc|ENSG00000139144|O75747-2|PIK3C2G	MULTI-MATCH	OvCa9_classI_Rep3	3		2	550.310949	1098.60735	-1.1942	-0.0006572	-3.4777	-0.0019138	-4.672	-0.002571	550.3090223538984	77.775	0.89626	75.422	75.151	76.048	-2.3527	-0.006606	-4.9511E-06	NaN	24.519	44	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82069	+		46429	19590	38475	38497							0.06198602511426543
QPKQQMLV	8	Unmodified	_QPKQQMLV_					0	0	0			REV__ENSG00000184384|ENST00000524717|MAML2	REV__ENSG00000184384|ENST00000524717|MAML2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.2822265625	2	486.27077	970.526987	0.80773	0.00039277	-1.213	-0.00058985	-0.40528	-0.00019708	486.27009750489657	33.618	1.5896	30.83	30.458	32.048	-2.7881					50	31	2	0	0	0	0.028476	1	955	955		26.796	8.4717	1	16004	+		46430	22426	38476	38498	49867	49867					0.0405441791673411
QPKQQMLV	8	Unmodified	_QPKQQMLV_					0	0	0			REV__ENSG00000184384|ENST00000524717|MAML2	REV__ENSG00000184384|ENST00000524717|MAML2	MULTI-MATCH	OvCa99_classI_Rep5	1		2	486.27077	970.526987	-0.055141	-2.6813E-05	4.6627	0.0022673	4.6075	0.0022405	486.27294775661284	30.989	0.34004	30.989	30.831	31.171	0	0.079509	0.0051068	NaN	26.796	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30374	+		46431	22426	38476	38498							0.0405441791673411
QPKQWSPI	8	Unmodified	_QPKQWSPI_					0	0	0			REV__chr10:71817437-71831846|110|372.71|0.1|11.85|-|1|None,PSAP|2	REV__chr10:71817437-71831846|110|372.71|0.1|11.85|-|1|None,PSAP|2	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.3343200683594	2	492.269084	982.523616	0.51783	0.00025491	-4.1692	-0.0020524	-3.6513	-0.0017974	492.26700548666895	45.381	0.7528	42.672	42.497	43.25	-2.7097					26	14	2	0	0	0	0.028476	1	2623	2623		49.442	27.482	1	111330	+		46432	15850	38477	38499	49868	49868					0.03165491134382137
QPKRLSTSI	9	Unmodified	_QPKRLSTSI_					0	0	0			REV__DHX16|p.C734Sfs*37|1|0.06|ENSG00000204560|chr6:30656707-30656707|C/-|frameshift_variant	REV__DHX16|p.C734Sfs*37|1|0.06|ENSG00000204560|chr6:30656707-30656707|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.261962890625	2	515.306198	1028.59784	-0.26649	-0.00013733	-1.1105	-0.00057224	-1.377	-0.00070957	515.3055644694521	47.198	0.96143	44.126	43.81	44.771	-3.0724					21	15	2	0	0	0	0.027462	1	2554	2554		27.882	6.9353	1	109900	+		46433	16292	38478	38500	49869	49869					0.08468834225891442
QPKTKLLLL	9	Unmodified	_QPKTKLLLL_					0	0	0		tr|A0A553SGY9|A0A553SGY9_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_11795PE=3SV=1	tr|A0A553SGY9|A0A553SGY9_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_11795PE=3SV=1	tr|A0A553SGY9|A0A553SGY9_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_11795PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	527.3538208007812	2	527.35516	1052.69577	-0.96273	-0.0005077	0.032514	1.7147E-05	-0.93021	-0.00049055	527.3551296429968	83.7	2.6043	82.101	81.731	84.335	-1.5988					154	51	5	0	0	0	0.013371	12	7176	7171;7176;7180;7186;7192;7198;7204;7210;7216;7222;7228;7237		158.07	0	1	2888100			46434	33210	38479	38501	49870;49871;49872;49873;49874;49875;49876;49877;49878;49879;49880;49881	49871					0.17152642821906738
QPKTKLLLL	9	Unmodified	_QPKTKLLLL_					0	0	0		tr|A0A553SGY9|A0A553SGY9_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_11795PE=3SV=1	tr|A0A553SGY9|A0A553SGY9_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_11795PE=3SV=1	tr|A0A553SGY9|A0A553SGY9_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_11795PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	527.3555908203125	2	527.35516	1052.69577	-1.5632	-0.00082436	0.52475	0.00027673	-1.0385	-0.00054763	527.3554451784479	84.795	2.6828	82.534	82.067	84.75	-2.261					181	53	5	0	0	0	0.0078217	12	4931	4921;4925;4931;4937;4943;4949;4955;4961;4968;4974;4980;4987		180.93	0	1	3877600			46435	33210	38479	38501	49882;49883;49884;49885;49886;49887;49888;49889;49890;49891;49892;49893	49884					0.17152642821906738
QPKTKLLLL	9	Unmodified	_QPKTKLLLL_					0	0	0		tr|A0A553SGY9|A0A553SGY9_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_11795PE=3SV=1	tr|A0A553SGY9|A0A553SGY9_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_11795PE=3SV=1	tr|A0A553SGY9|A0A553SGY9_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_11795PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.3563232421875	2	527.35516	1052.69577	0.64821	0.00034183	-0.077186	-4.0705E-05	0.57102	0.00030113	527.3550440559598	85.182	2.5141	82.536	82.215	84.729	-2.6463					145	50	5	0	0	0	0.045281	4	7154	7143;7154;7166;7190		122.18	0	1	2786200			46436	33210	38479	38501	49894;49895;49896;49897	49895					0.17152642821906738
QPKWVEVEE	9	Unmodified	_QPKWVEVEE_					0	0	0		nc|ENSG00000154358|Q5VST9-3|OBSCN	nc|ENSG00000154358|Q5VST9-3|OBSCN	nc|ENSG00000154358|Q5VST9-3|OBSCN	MULTI-MSMS	OvCa9_classI_Rep2	2	572.2852172851562	2	572.287671	1142.56079	-1.4852	-0.00084994	-1.4521	-0.00083101	-2.9373	-0.001681	572.2866735153697	32.713	1.6873	30.003	29.53	31.218	-2.7097					70	33	3	0	0	0	0.46356	1	1096	1096		45.972	11.8	1	392360			46437	15107	38480	38502	49898	49898					-0.004788821105421448
QPKYKHVYP	9	Unmodified	_QPKYKHVYP_					0	0	0		ENSG00000213965|ENST00000397061|NUDT19	ENSG00000213965|ENST00000397061|NUDT19	ENSG00000213965|ENST00000397061|NUDT19	MULTI-SECPEP	OvCa9_classI_Rep3	3	580.8391723632812	2	580.316566	1158.61858	-2.1816	-0.001266	-3.1132	-0.0018066	-5.2947	-0.0030726	580.3144436435998	92.277	0.9446	90.253	89.737	90.681	-2.0241					44	19	3	0	0	0	0.027462	1	5881	5881		18.324	6.1176	1	146630			46438	9158	38481	38503	49899	49899					0.04561424605549291
QPLAARPAF	9	Unmodified	_QPLAARPAF_					0	0	0		ENST00000520220.6_2_8:56792441-56792612:+|nuORF	ENST00000520220.6_2_8:56792441-56792612:+|nuORF	ENST00000520220.6_2_8:56792441-56792612:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	485.77728271484375	2	485.777077	969.5396	-0.44927	-0.00021825	-0.24049	-0.00011683	-0.68976	-0.00033507	485.7769188382836	47.173	2.0359	44.464	43.943	45.979	-2.7097					108	40	4	0	0	0	0.32337	1	2910	2910		60.294	6.9425	1	1379700			46439	13101	38482	38504	49900	49900					0.053611973712691
QPLCESNA	8	Unmodified	_QPLCESNA_					0	0	0		ENST00000377016.8_1_6:29595320-29599222:-|nuORF	ENST00000377016.8_1_6:29595320-29599222:-|nuORF	ENST00000377016.8_1_6:29595320-29599222:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	431.1939392089844	2	431.192185	860.369817	1.9481	0.00084	3.8639	0.0016661	5.812	0.0025061	431.19384068419987	129.11	0.98819	127.66	127.35	128.34	-1.4565					40	19	3	0	0	0	0.75241	1	12348	12348		25.45	1.2474	1	84724			46440	11082	38483	38505	49901	49901					-0.06595286693459457
QPLDLVRR	8	Unmodified	_QPLDLVRR_					0	0	0		ENSG00000151572|ENST00000392977|ANO4;nc|ENSG00000151572|Q32M45-2|ANO4	ENSG00000151572|ENST00000392977|ANO4	ENSG00000151572|ENST00000392977|ANO4	MULTI-MSMS	OvCa9_classI_Rep2	2	498.800537109375	2	498.801083	995.587613	-1.4377	-0.00071715	0.77807	0.0003881	-0.65968	-0.00032905	498.8014440110007	51.637	2.1267	48.824	48.353	50.48	-2.8129					131	42	5	0	0	0	0.61436	1	3435	3435		60.972	0.67798	1	2284200			46441	5564	38484	38506	49902	49902					0.08964271291324621
QPLDVNTPTAT	11	Unmodified	_QPLDVNTPTAT_					0	0	0			REV__nc|ENSG00000111641|P46087-4|NOP2	REV__nc|ENSG00000111641|P46087-4|NOP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	579.7858276367188	2	578.79586	1155.57717	-0.67481	-0.00039057	-0.060741	-3.5157E-05	-0.73555	-0.00042573	578.7956614734334	58.013	1.7071	54.668	54.342	56.049	-3.3449					81	33	3	0	0	0	0.025487	1	3950	3950		25.126	0	1	1114700	+		46442	28796	38485	38507	49903	49903					0.005601990555760494
QPLEKEND	8	Unmodified	_QPLEKEND_					0	0	0		RHPN2-CEP89|1|fusion;RHPN2-GPATCH1|1|fusion;RHPN2-SLC7A10|1|fusion;ENSG00000131941|ENST00000254260|RHPN2;RHPN2-GRIN2D|1|fusion	RHPN2-CEP89|1|fusion;ENSG00000131941|ENST00000254260|RHPN2;RHPN2-GRIN2D|1|fusion	RHPN2-GRIN2D|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.7646484375	2	486.735271	971.45599	-0.40427	-0.00019677	1.3059	0.00063565	0.90168	0.00043888	486.73573046365664	29.713	0.24824	29.713	29.586	29.835	0					10	4	3	0	0	0	0.028476	1	1097	1097		23.042	10.083	1	72841			46443	32786;4099;32785	38486	38508	49904	49904					-0.030880035871064138
QPLHEKSKL	9	Unmodified	_QPLHEKSKL_					0	0	0			REV__nc|ENSG00000130518|Q9H0B3-2|IQCN	REV__nc|ENSG00000130518|Q9H0B3-2|IQCN	MULTI-MSMS	OvCa9_classI_Rep2	2	540.31396484375	2	540.314023	1078.61349	0.22226	0.00012009	-1.1209	-0.00060566	-0.89869	-0.00048557	540.3133957474183	87.154	1.5472	85.723	85.228	86.775	-1.4311					91	30	5	0	0	0	0.40667	1	7601	7601		51.335	8.9393	1	361860	+		46444	18951	38487	38509	49905	49905					0.0773312074295518
QPLHEKSKL	9	Unmodified	_QPLHEKSKL_					0	0	0			REV__nc|ENSG00000130518|Q9H0B3-2|IQCN	REV__nc|ENSG00000130518|Q9H0B3-2|IQCN	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3151245117188	2	540.314023	1078.61349	-0.0032497	-1.7559E-06	-0.40502	-0.00021884	-0.40827	-0.00022059	540.3136598498987	87.836	1.514	85.659	85.19	86.704	-2.1768					78	29	5	0	0	0	0.14998	1	5304	5304		84.916	0	1	618000	+		46445	18951	38487	38509	49906	49906					0.0773312074295518
QPLHEKSKL	9	Unmodified	_QPLHEKSKL_					0	0	0			REV__nc|ENSG00000130518|Q9H0B3-2|IQCN	REV__nc|ENSG00000130518|Q9H0B3-2|IQCN	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	540.314023	1078.61349	0.22226	0.00012009	-1.1209	-0.00060566	-0.89869	-0.00048557	540.3133957474183	87.154	1.5472	85.723	85.228	86.775	-1.4311	0.033749	-0.00079316	NaN	84.916	91	30	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	361860	+		46446	18951	38487	38509							0.0773312074295518
QPLHEKSKL	9	Unmodified	_QPLHEKSKL_					0	0	0			REV__nc|ENSG00000130518|Q9H0B3-2|IQCN	REV__nc|ENSG00000130518|Q9H0B3-2|IQCN	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	540.314023	1078.61349	-0.0032497	-1.7559E-06	-0.40502	-0.00021884	-0.40827	-0.00022059	540.3136598498987	87.836	1.514	85.659	85.19	86.704	-2.1768	-0.030557	-1.9511E-05	NaN	84.916	78	29	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	618000	+		46447	18951	38487	38509							0.0773312074295518
QPLHVRRKKYF	11	Unmodified	_QPLHVRRKKYF_					0	0	0			REV__ENSG00000260314|ENST00000569591|MRC1	REV__ENSG00000260314|ENST00000569591|MRC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.3191223144531	3	491.293005	1470.85719	-0.26675	-0.00013105	-3.3604	-0.0016509	-3.6271	-0.001782	491.29148811262274	46.482	0.51708	43.41	43.241	43.759	-3.0724					14	9	2	0	0	0	0.026383	1	2443	2443		12.957	6.9564	1	52377	+		46448	23559	38488	38510	49907	49907					0.14059204907675849
QPLKNLLLS	9	Unmodified	_QPLKNLLLS_					0	0	0		nc|ENSG00000142166|P17181-4|IFNAR1;nc|ENSG00000142166|P17181-3|IFNAR1;ENSG00000142166|ENST00000270139|IFNAR1	nc|ENSG00000142166|P17181-4|IFNAR1	nc|ENSG00000142166|P17181-4|IFNAR1	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.3032836914062	2	513.321317	1024.62808	1.3091	0.00067198	-1.7823	-0.00091487	-0.47318	-0.00024289	513.3202996119921	120.17	1.0354	119.14	118.87	119.91	-1.0271					42	20	3	0	0	0	0.027418	1	9116	9116		62.107	0	1	84752			46449	4956	38489	38511	49908	49908					0.11675192891107145
QPLKNRQI	8	Unmodified	_QPLKNRQI_					0	0	0		ENSG00000104267|ENST00000285379|CA2	ENSG00000104267|ENST00000285379|CA2	ENSG00000104267|ENST00000285379|CA2	MULTI-MSMS	OvCa9_classI_Rep2	2	498.8006896972656	2	498.801083	995.587613	-1.4377	-0.00071715	0.77807	0.0003881	-0.65968	-0.00032905	498.8014440110007	51.637	2.1267	48.824	48.353	50.48	-2.8129					131	42	5	0	0	0	0.47599	2	3442	3411;3442		79.939	26.588	1	2284200			46450	2361	38490	38512	49909;49910	49910					0.08964271291313253
QPLLILRF	8	Unmodified	_QPLLILRF_					0	0	0		ENST00000461745.5_2_3:77089697-77089820:+|nuORF	ENST00000461745.5_2_3:77089697-77089820:+|nuORF	ENST00000461745.5_2_3:77089697-77089820:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.3177185058594	2	500.32112	998.627687	-0.67254	-0.00033648	-3.8558	-0.0019292	-4.5284	-0.0022656	500.3190839982763	39.697	1.215	36.743	36.417	37.632	-2.9541					46	23	3	0	0	0	0.71369	1	1660	1660		40.573	7.057	1	200120			46451	12184	38491	38513	49911	49911					0.1283181796189865
QPLLILRF	8	Unmodified	_QPLLILRF_					0	0	0		ENST00000461745.5_2_3:77089697-77089820:+|nuORF	ENST00000461745.5_2_3:77089697-77089820:+|nuORF	ENST00000461745.5_2_3:77089697-77089820:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	500.32112	998.627687	-0.97578	-0.0004882	-3.2496	-0.0016258	-4.2253	-0.002114	500.31944842498433	39.557	1.043	36.847	36.607	37.65	-2.7097	0.052256	0.00028282	NaN	40.573	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89099			46452	12184	38491	38513							0.1283181796189865
QPLLKSLNK	9	Unmodified	_QPLLKSLNK_					0	0	0			REV__ENSG00000168619|ENST00000265707|ADAM18	REV__ENSG00000168619|ENST00000265707|ADAM18	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.301513671875	2	520.826766	1039.63898	-1.0798	-0.00056237	0.26178	0.00013634	-0.81798	-0.00042603	520.8269549104027	82.001	0.82142	79.318	79.109	79.93	-2.6829					39	16	3	0	0	0	0.027462	1	6829	6829		39.253	8.9351	1	73346	+		46453	21388	38492	38514	49912	49912					0.12074595265357857
QPLLPGILT	9	Unmodified	_QPLLPGILT_					0	0	0			REV__ENST00000546676.1_1_12:50529254-50529473:-|nuORF	REV__ENST00000546676.1_1_12:50529254-50529473:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.2879333496094	2	476.29731	950.580068	-0.11375	-5.418E-05	0.11777	5.6094E-05	0.0040194	1.9145E-06	476.2971337792189	89.323	2.0959	86.72	85.377	87.473	-2.6027					58	41	2	0	0	0	0.027462	1	7665	7665		30.504	1.3541	1	24310	+		46454	27426	38493	38515	49913	49913					0.10280118971036245
QPLLSHVAL	9	Unmodified	_QPLLSHVAL_					0	0	0		ENSG00000118873|ENST00000358951|RAB3GAP2	ENSG00000118873|ENST00000358951|RAB3GAP2	ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.29345703125	2	489.292559	976.570566	0.42184	0.00020641	-1.1367	-0.00055619	-0.71488	-0.00034979	489.29193832315656	60.999	1.7478	57.569	57.144	58.891	-3.43					60	35	2	0	0	0	0.32337	1	4166	4166		60.294	6.9425	1	1072400			46455	3328	38494	38516	49914	49914					0.0813435068552053
QPLNGSSGGLS	11	Unmodified	_QPLNGSSGGLS_					0	0	0			REV__ENSG00000073910|ENST00000542859|FRY	REV__ENSG00000073910|ENST00000542859|FRY	MULTI-MSMS	OvCa99_classI_Rep5	1	508.7538146972656	2	508.753995	1015.49344	-0.77081	-0.00039215	0.53986	0.00027466	-0.23094	-0.00011749	508.7541019423406	26.453	0.44976	26.453	26.242	26.692	0					17	8	3	0	0	0	0.34051	1	689	689		65.465	3.358	1	82300	+		46456	16942	38495	38517	49915	49915					-0.013689123214589927
QPLNKKVSSE	10	Unmodified	_QPLNKKVSSE_					0	0	0			REV__ENSG00000163728|ENST00000296015|TTC14	REV__ENSG00000163728|ENST00000296015|TTC14	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.2962036132812	2	565.31422	1128.61389	3.109	0.0017576	0.73371	0.00041478	3.8427	0.0021723	565.3146145882326	98.976	0.35332	98.976	98.801	99.154	0					14	8	2	0	0	0	0.027001	1	10908	10908		28.081	17.816	1	848850	+		46457	20879	38496	38518	49916	49916					0.054724956721202034
QPLPRIVTI	9	Unmodified	_QPLPRIVTI_					0	0	0		ENSG00000095397|ENST00000362057|WHRN;nc|ENSG00000095397|Q9P202-3|WHRN;nc|ENSG00000095397|Q9P202-4|WHRN	ENSG00000095397|ENST00000362057|WHRN	ENSG00000095397|ENST00000362057|WHRN	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.8001098632812	2	518.829309	1035.64407	-1.4663	-0.00076077	3.1032	0.00161	1.6369	0.00084926	519.3323089986213	85.02	0.54299	83.474	83.301	83.844	-1.5462					15	10	2	0	0	0	0.027462	1	7373	7373		27.882	0	1	25611			46458	1928	38497	38519	49917	49917					0.12766899127996112
QPLQLLNTV	9	Unmodified	_QPLQLLNTV_					0	0	0			REV__nc|ENSG00000101972|Q8N3U4|STAG2	REV__nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MSMS	OvCa9_classI_Rep3	3	513.303466796875	2	513.303124	1024.5917	1.1491	0.00058985	-2.003	-0.0010282	-0.8539	-0.00043831	513.3019737224882	119.91	1.5322	118.89	118.43	119.96	-1.0271					40	16	3	0	0	0	0.48324	1	9122	9122		44.117	1.7207	1	144840	+		46459	17530	38498	38520	49918	49918					0.0803831599437217
QPLQSKVTP	9	Unmodified	_QPLQSKVTP_					0	0	0			REV__ENSG00000205363|ENST00000569673|INSYN1	REV__ENSG00000205363|ENST00000569673|INSYN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.903076171875	2	499.287474	996.560395	-1.1358	-0.00056708	1.9063	0.00095177	0.77048	0.00038469	499.28814336742454	71.273	1.023	67.817	67.486	68.509	-3.4563					38	20	3	0	0	0	0.027441	1	5393	5393		40.778	0	1	54175	+		46460	23214	38499	38521	49919	49919					0.061977429602734446
QPLRLGPGLE	10	Unmodified	_QPLRLGPGLE_					0	0	0		ENSG00000214309|ENST00000398075|MBLAC1	ENSG00000214309|ENST00000398075|MBLAC1	ENSG00000214309|ENST00000398075|MBLAC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3146362304688	2	540.314023	1078.61349	-3.1635	-0.0017093	2.1906	0.0011836	-0.97297	-0.00052571	540.3151490756045	88.289	1.2549	85.686	85.228	86.483	-2.6027					73	24	4	0	0	0	0.5675	1	7526	7526		45.972	0	1	512420			46461	9169	38500	38522	49920	49920					0.0773312074295518
QPLRTESGLRQ	11	Unmodified	_QPLRTESGLRQ_					0	0	0			REV__ENSG00000055483|ENST00000449938|USP36	REV__ENSG00000055483|ENST00000449938|USP36	MULTI-SECPEP	OvCa9_classI_Rep2	2	643.3720092773438	2	642.854575	1283.6946	0.28804	0.00018517	-3.203	-0.002059	-2.9149	-0.0018739	642.8522619307817	91.241	0.79563	90.006	89.689	90.484	-1.2355					31	14	3	0	0	0	0.025457	1	8064	8064		29.17	0	1	51925	+		46462	16711	38501	38523	49921	49921					0.0640977671505425
QPLRTLKI	8	Unmodified	_QPLRTLKI_					0	0	0			REV__ENSG00000180182|ENST00000324817|MED14	REV__ENSG00000180182|ENST00000324817|MED14	MULTI-MSMS	OvCa9_classI_Rep2	2	484.8156433105469	2	484.816202	967.617851	-0.92839	-0.0004501	0.72443	0.00035122	-0.20396	-9.8884E-05	484.81643297200304	55.856	1.9338	53.052	52.482	54.415	-2.804					94	38	4	0	0	0	0.56195	2	3910	3893;3910		71.296	7.9894	1	432030	+		46463	22161	38502	38524	49922;49923	49923					0.13274629956515582
QPLSDRVIR	9	Unmodified	_QPLSDRVIR_					0	0	0		ENSG00000178538|ENST00000317995|CA8	ENSG00000178538|ENST00000317995|CA8	ENSG00000178538|ENST00000317995|CA8	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.800537109375	2	542.317097	1082.61964	-0.95075	-0.00051561	3.9099	0.0021204	2.9592	0.0016048	542.3192886611286	34.281	0.38086	34.281	34.017	34.398	0					10	7	2	0	0	0	0.027462	1	1642	1642		11.636	0	1	28071			46464	7760	38503	38525	49924	49924					0.08163638974451715
QPLSPKEP	8	Unmodified	_QPLSPKEP_					0	0	0			REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	REV__nc|ENSG00000134909|A7KAX9-2|ARHGAP32	MULTI-SECPEP	OvCa9_classI_Rep4_	4	447.7614440917969	2	448.247818	894.481082	-0.50735	-0.00022742	-1.5841	-0.00071006	-2.0914	-0.00093747	448.24702712359135	41.517	0.46558	38.537	38.388	38.853	-2.9804					12	8	2	0	0	0	0.028476	1	1845	1845		31.955	11.473	1	50509	+		46465	19243	38504	38526	49925	49925					0.029620960061379265
QPLTTLKKQL	10	Unmodified	_QPLTTLKKQL_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L;nc|ENSG00000177409|Q8IVG5-2|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	585.35205078125	2	585.366256	1168.71796	-1.0777	-0.00063087	4.1919	0.0024538	3.1142	0.0018229	585.3685762456639	74.159	0.56761	70.928	70.769	71.337	-3.2308					17	11	3	0	0	0	0.027056	1	5804	5804		14.865	0	1	48007			46466	7677	38505	38527	49926	49926					0.14034822499684196
QPLYNVILN	9	Unmodified	_QPLYNVILN_					0	0	0			REV__nc|ENSG00000162374|P26378-3|ELAVL4	REV__nc|ENSG00000162374|P26378-3|ELAVL4	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.8406982421875	2	537.303124	1072.5917	-0.28006	-0.00015048	-3.8969	-0.0020938	-4.177	-0.0022443	537.3008349148846	42.818	0.56152	42.818	42.624	43.185	0					29	12	4	0	0	0	0.027462	1	2813	2813		37.159	17.162	1	1183400	+		46467	28962	38506	38528	49927	49927					0.05830315994398916
QPMLGIVVPV	10	Unmodified	_QPMLGIVVPV_					0	0	0			REV__ENSG00000170677|ENST00000397942|SOCS6	REV__ENSG00000170677|ENST00000397942|SOCS6	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.7569580078125	2	526.81227	1051.60999	-0.24435	-0.00012873	3.2414	0.0017076	2.997	0.0015789	526.8139251647235	30.856	0.24812	30.856	30.682	30.93	0					7	4	2	0	0	0	0.027048	1	1222	1222		12.207	0	1	23977	+		46468	21556	38507	38529	49928	49928					0.08624734644718046
QPNEAVVKQK	10	Unmodified	_QPNEAVVKQK_					0	0	0			REV__ENSG00000161647|ENST00000398389|MPP3	REV__ENSG00000161647|ENST00000398389|MPP3	MULTI-MSMS	OvCa9_classI_Rep3	3	570.8240966796875	2	570.822212	1139.62987	-1.4032	-0.00080099	0.31116	0.00017762	-1.0921	-0.00062337	570.8225609125153	84.075	2.0116	81.814	81.434	83.445	-2.261					125	41	4	0	0	0	0.45822	1	4860	4860		60.118	0	1	2084000	+		46469	20701	38508	38530	49929	49929					0.06564201909031908
QPNGSPRGVQ	10	Unmodified	_QPNGSPRGVQ_					0	0	0		ENSG00000105278|ENST00000262961|ZFR2;nc|ENSG00000105278|Q9UPR6-3|ZFR2	ENSG00000105278|ENST00000262961|ZFR2	ENSG00000105278|ENST00000262961|ZFR2	MULTI-MSMS	OvCa99_classI_Rep5	1	520.2672729492188	2	520.267604	1038.52066	0.40372	0.00021004	-1.6908	-0.00087966	-1.2871	-0.00066962	520.2665765593395	131.83	1.6957	131.83	131.25	132.94	0					116	35	4	0	0	0	0.38315	1	15370	15370		70.816	12.586	1	1907800			46470	2437	38509	38531	49930	49930					0.002936160095487139
QPNITSSASFL	11	Unmodified	_QPNITSSASFL_					0	0	0		ENST00000371117.7_1_6:51750749-51768419:-|nuORF	ENST00000371117.7_1_6:51750749-51768419:-|nuORF	ENST00000371117.7_1_6:51750749-51768419:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	582.796630859375	2	582.798403	1163.58225	0.57799	0.00033685	-3.1415	-0.0018309	-2.5635	-0.001494	582.7963998660774	132.36	0.85371	132.36	132.13	132.99	0					45	17	3	0	0	0	0.63561	1	15371	15371		41.427	2.1738	1	273830			46471	10948	38510	38532	49931	49931					0.007005029181982536
QPNKPRVR	8	Unmodified	_QPNKPRVR_					0	0	0		nc|ENSG00000165300|O94991-2|SLITRK5;ENSG00000165300|ENST00000683689|SLITRK5	nc|ENSG00000165300|O94991-2|SLITRK5	nc|ENSG00000165300|O94991-2|SLITRK5	MULTI-SECPEP	OvCa9_classI_Rep2	2	497.7864990234375	2	497.798875	993.583196	0.38523	0.00019177	1.5438	0.00076852	1.9291	0.00096028	497.79962507718113	66.499	0.79561	63.803	63.517	64.313	-2.6958					31	15	3	0	0	0	0.028476	1	5209	5209		37.159	24.952	1	76960			46472	6549	38511	38533	49932	49932					0.0861480686842242
QPNLCYITN	9	Unmodified	_QPNLCYITN_					0	0	0			REV__ENSG00000130487|ENST00000648057|KLHDC7B	REV__ENSG00000130487|ENST00000648057|KLHDC7B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.2510375976562	2	533.255317	1064.49608	-0.57858	-0.00030853	-3.9245	-0.0020928	-4.5031	-0.0024013	533.7550191764285	128.63	0.29724	127.17	127.05	127.35	-1.4565					7	5	2	0	0	0	0.027461	1	12301	12301		25.574	1.0549	1	11496	+		46473	18949	38512	38534	49933	49933					-0.033587801881594714
QPNLPAETL	9	Unmodified	_QPNLPAETL_					0	0	0			REV__ENST00000418944.1_1_2:110941632-110941998:+|nuORF	REV__ENST00000418944.1_1_2:110941632-110941998:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.74462890625	2	491.763832	981.513111	2.1334	0.0010491	-3.1758	-0.0015617	-1.0423	-0.00051258	491.7621872461847	113.19	0.44597	113.19	112.97	113.42	0					15	9	2	0	0	0	0.027462	1	12889	12889		20.947	7.1716	1	147230	+		46474	25577	38513	38535	49934	49934					0.02161463689287757
QPNPGDAL	8	Unmodified	_QPNPGDAL_					0	0	0		nc|ENSG00000141985|Q99961-2|SH3GL1	nc|ENSG00000141985|Q99961-2|SH3GL1	nc|ENSG00000141985|Q99961-2|SH3GL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	406.2020568847656	2	406.200867	810.387182	-0.71092	-0.00028878	0.54113	0.00021981	-0.16978	-6.8967E-05	406.20098492434767	49.367	2.4314	46.225	45.623	48.054	-3.1416					108	46	4	0	0	0	0.50674	2	2807	2769;2807		76.847	10.949	1	1031500			46475	15066	38514	38536	49935;49936	49936					-0.025596230961355104
QPNPQKLW	8	Unmodified	_QPNPQKLW_					0	0	0		nc|ENSG00000165115|Q86VH2-3|KIF27;nc|ENSG00000165115|Q86VH2-2|KIF27;ENSG00000165115|ENST00000297814|KIF27	nc|ENSG00000165115|Q86VH2-3|KIF27	nc|ENSG00000165115|Q86VH2-3|KIF27	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.3188171386719	2	505.774534	1009.53451	-0.30414	-0.00015383	-3.924	-0.0019846	-4.2281	-0.0021385	505.77243714098097	33.414	0.39622	33.414	33.236	33.632	0					21	7	4	0	0	0	0.028476	1	1559	1559		33.516	6.7195	1	530240			46476	6522	38515	38537	49937	49937					0.030128935086509046
QPNQVQLN	8	Unmodified	_QPNQVQLN_					0	0	0			REV__nc|ENSG00000185591|P08047-3|SP1	REV__nc|ENSG00000185591|P08047-3|SP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.832763671875	2	470.745973	939.477394	2.6397	0.0012426	4.2486	0.002	6.8884	0.0032427	470.74781528199827	98.874	0.43744	98.874	98.638	99.076	0					15	10	2	0	0	0	0.028476	1	10926	10926		60.294	31.144	1	441140	+		46477	22514	38516	38538	49938	49938					0.005234262322801442
QPPAKKLL	8	Unmodified	_QPPAKKLL_					0	0	0			REV__ENSG00000073969|ENST00000398238|NSF	REV__ENSG00000073969|ENST00000398238|NSF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	447.7613525390625	2	447.792195	893.569838	-0.54663	-0.00024478	2.6771	0.0011988	2.1305	0.000954	447.7943818889267	41.557	0.67483	38.577	38.231	38.906	-2.9804					22	12	3	0	0	0	0.028476	1	1879	1879		35.201	9.7505	1	43226	+		46478	16944	38517	38539	49939	49939					0.1187955603646742
QPPAVFTPQN	10	Unmodified	_QPPAVFTPQN_					0	0	0			REV__ENSG00000170396|ENST00000302277|ZNF804A	REV__ENSG00000170396|ENST00000302277|ZNF804A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.7997436523438	2	549.782556	1097.55056	-1.2445	-0.0006842	-2.1536	-0.001184	-3.3981	-0.0018682	549.7813570215977	43.973	0.59716	40.966	40.744	41.341	-3.0074					20	11	2	0	0	0	0.027028	1	2122	2122		39.253	3.6345	1	39893	+		46479	21537	38518	38540	49940	49940					0.005685549549070856
QPPFVWII	8	Unmodified	_QPPFVWII_					0	0	0			REV__ENST00000468481.1_1_6:52935821-52938500:+|nuORF	REV__ENST00000468481.1_1_6:52935821-52938500:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.7649230957031	2	500.286746	998.558939	-0.031408	-1.5713E-05	2.7674	0.0013845	2.736	0.0013688	500.28809025163	31.163	0.92665	31.163	30.731	31.658	0					46	18	4	0	0	0	0.028476	1	1254	1254		25.45	0	1	720210	+		46480	26225	38519	38541	49941	49941					0.059601536621812556
QPPGFLLR	8	Unmodified	_QPPGFLLR_					0	0	0		ENST00000367833.6_1_1:168148269-168153151:+|nuORF	ENST00000367833.6_1_1:168148269-168153151:+|nuORF	ENST00000367833.6_1_1:168148269-168153151:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	464.27166748046875	2	464.27417	926.533787	-1.424	-0.00066111	-2.8216	-0.00131	-4.2455	-0.0019711	464.272712746856	33.99	1.1371	31.28	30.972	32.109	-2.7097					36	22	2	0	0	0	0.74971	1	1264	1264		26.796	1.3459	1	188940			46481	10855	38520	38542	49942	49942					0.06758098859609163
QPPGLLFR	8	Unmodified	_QPPGLLFR_					0	0	0			REV__nc|ENSG00000188827|Q8IY92-2|SLX4	REV__nc|ENSG00000188827|Q8IY92-2|SLX4	MULTI-MSMS	OvCa9_classI_Rep2	2	464.2720031738281	2	464.27417	926.533787	-1.424	-0.00066111	-2.8216	-0.00131	-4.2455	-0.0019711	464.272712746856	33.99	1.1371	31.28	30.972	32.109	-2.7097					36	22	2	0	0	0	0.73626	1	1271	1271		33.516	3.0119	1	188940	+		46482	22743	38521	38543	49943	49943					0.06758098859597794
QPPHPMALPVP	11	Unmodified	_QPPHPMALPVP_					0	0	0		PCGF2|p.V259Lfs*53|1|0.65|ENSG00000277258|chr17:38735463-38735484|GCTGGGAGCCTTGTCGCTGACT/-|frameshift_variant	PCGF2|p.V259Lfs*53|1|0.65|ENSG00000277258|chr17:38735463-38735484|GCTGGGAGCCTTGTCGCTGACT/-|frameshift_variant	PCGF2|p.V259Lfs*53|1|0.65|ENSG00000277258|chr17:38735463-38735484|GCTGGGAGCCTTGTCGCTGACT/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	591.3731689453125	2	592.318251	1182.62195	-0.369	-0.00021856	-3.1263	-0.0018518	-3.4953	-0.0020703	592.3159533646259	73.991	0.90274	70.76	70.434	71.337	-3.2308					39	18	3	0	0	0	0.025377	1	5762	5762		56.721	3.7844	1	166560			46483	15483	38522	38544	49944	49944					0.03794351387887218
QPPKDGDAIK	10	Unmodified	_QPPKDGDAIK_					0	0	0		nc|ENSG00000101958|P23416-3|GLRA2;nc|ENSG00000101958|P23416-2|GLRA2;ENSG00000101958|ENST00000218075|GLRA2	nc|ENSG00000101958|P23416-3|GLRA2	nc|ENSG00000101958|P23416-3|GLRA2	MULTI-MSMS	OvCa9_classI_Rep3	3	534.7914428710938	2	534.787838	1067.56112	3.0352	0.0016232	3.7794	0.0020212	6.8146	0.0036444	534.7896759823677	56.343	2.6096	53.193	52.451	55.06	-3.1504					179	83	3	0	0	0	0.72142	1	1571	1571		28.081	1.3886	1	87189			46484	2209	38523	38545	49945	49945					0.03004537609331237
QPPLGPAIKH	10	Unmodified	_QPPLGPAIKH_					0	0	0			REV__nc|ENSG00000068305|Q02078-3|MEF2A	REV__nc|ENSG00000068305|Q02078-3|MEF2A	MULTI-MSMS	OvCa9_classI_Rep2	2	529.3086547851562	2	529.311284	1056.60801	-1.2294	-0.00065075	0.95943	0.00050784	-0.27	-0.00014291	529.309695523309	47.811	1.2925	45.101	44.687	45.979	-2.7097					50	25	3	0	0	0	0.78463	1	2939	2939		20.947	4.4738	1	311230	+		46485	28728	38524	38546	49946	49946					0.08197441951142537
QPPLLTNTKS	10	Unmodified	_QPPLLTNTKS_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-7|BLTP1	REV__nc|ENSG00000138688|Q2LD37-7|BLTP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.279052734375	2	549.811313	1097.60807	-1.0177	-0.00055954	1.9387	0.0010659	0.92097	0.00050636	549.8121584530655	34.152	0.28802	34.152	33.969	34.257	0					8	5	2	0	0	0	0.027142	1	1610	1610		15.333	2.3739	1	46032	+		46486	19560	38525	38547	49947	49947					0.06317397160455585
QPPNDPAPTPS	11	Unmodified	_QPPNDPAPTPS_					0	0	0			REV__CNOT2-C3orf19|1|fusion	REV__CNOT2-C3orf19|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	560.7899169921875	2	560.767103	1119.51965	0.045095	2.5288E-05	-0.98607	-0.00055295	-0.94097	-0.00052767	560.7656990345357	64.243	0.52496	61.519	61.286	61.811	-2.7245					13	9	2	0	0	0	0.025457	1	4918	4918		29.17	0	1	20971	+		46487	16154	38526	38548	49948	49948					-0.03532643149992509
QPPNYLGLK	9	Unmodified	_QPPNYLGLK_					0	0	0		nc|ENSG00000196199|Q99549-2|MPHOSPH8;ENST00000496525.1_1_13:20244500-20245123:+|nuORF	nc|ENSG00000196199|Q99549-2|MPHOSPH8	nc|ENSG00000196199|Q99549-2|MPHOSPH8	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.768798828125	2	515.290017	1028.56548	-1.288	-0.0006637	-0.82202	-0.00042358	-2.11	-0.0010873	515.2895508872567	38.501	0.34575	35.791	35.667	36.013	-2.7097					8	6	2	0	0	0	0.027462	1	1819	1819		27.882	1.1893	1	10908			46488	15239	38527	38549	49949	49949					0.05234046822874916
QPPPAQSHRM	10	Unmodified	_QPPPAQSHRM_					0	0	0		nc|ENSG00000104299|Q9NV88-3|INTS9;nc|ENSG00000104299|Q9NV88-2|INTS9;ENSG00000104299|ENST00000521022|INTS9;ENST00000520316.5_1_8:28627126-28633440:-|nuORF	nc|ENSG00000104299|Q9NV88-3|INTS9	nc|ENSG00000104299|Q9NV88-3|INTS9	MULTI-MSMS	OvCa9_classI_Rep2	2	574.785888671875	2	574.785107	1147.55566	0.20431	0.00011743	1.71	0.0009829	1.9143	0.0011003	574.7859224964665	41.906	0.98635	39.197	38.931	39.917	-2.7097					50	19	4	0	0	0	0.79917	1	2233	2233		19.104	2.3861	1	176440			46489	2363	38528	38550	49950	49950					-0.012214644541245434
QPPPLQRGK	9	Unmodified	_QPPPLQRGK_					0	0	0		nc|ENSG00000197283|Q96PV0-3|SYNGAP1;nc|ENSG00000197283|Q96PV0-2|SYNGAP1;nc|ENSG00000197283|Q96PV0-4|SYNGAP1;ENSG00000197283|ENST00000646630|SYNGAP1	nc|ENSG00000197283|Q96PV0-3|SYNGAP1	nc|ENSG00000197283|Q96PV0-3|SYNGAP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.771728515625	2	510.801083	1019.58761	-0.74701	-0.00038157	0.86301	0.00044082	0.116	5.9252E-05	510.80112317887074	40.257	1.1805	37.303	36.764	37.945	-2.9541					34	22	2	0	0	0	0.027462	1	1750	1750		30.504	0	1	98284			46490	8697	38529	38551	49951	49951					0.07860271291326626
QPPRLEYYES	10	Unmodified	_QPPRLEYYES_					0	0	0		ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	ENSG00000185950|ENST00000375856|IRS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	427.8763732910156	3	427.875182	1280.60372	0.29787	0.00012745	1.4082	0.00060252	1.706	0.00072997	427.8757384772746	21.177	1.1305	19.839	19.595	20.726	-1.3386					50	22	3	0	0	0	0.72142	1	154	154		28.081	1.3318	1	100150			46491	8303	38530	38552	49952	49952					-0.025361120530988046
QPPRPEPR	8	Unmodified	_QPPRPEPR_					0	0	0			REV__nc|ENSG00000275832|Q9P227-2|ARHGAP23	REV__nc|ENSG00000275832|Q9P227-2|ARHGAP23	MULTI-MSMS	OvCa9_classI_Rep2	2	488.7685241699219	2	488.769783	975.525013	1.2932	0.0006321	-1.4294	-0.00069867	-0.13621	-6.6574E-05	488.768982247457	29.946	0.5435	27.236	27.113	27.656	-2.7097					14	10	2	0	0	0	0.75723	1	781	781		23.042	0	1	33067	+		46492	23627	38531	38553	49953	49953					0.03627125223135863
QPPRQVILT	9	Unmodified	_QPPRQVILT_					0	0	0		ENSG00000108622|ENST00000579788|ICAM2	ENSG00000108622|ENST00000579788|ICAM2	ENSG00000108622|ENST00000579788|ICAM2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.2507934570312	2	526.316566	1050.61858	-2.1566	-0.0011351	-0.64168	-0.00033773	-2.7983	-0.0014728	526.3162197656861	126.95	0.6461	125.52	125.34	125.99	-1.4357					18	12	2	0	0	0	0.027462	1	12079	12079		35.618	5.1146	1	11025			46493	2668	38532	38554	49954	49954					0.09529424605557324
QPPSRRRGRR	10	Unmodified	_QPPSRRRGRR_					0	0	0			REV__ENST00000573539.5_1_17:3442880-3458098:-|nuORF	REV__ENST00000573539.5_1_17:3442880-3458098:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3695068359375	2	633.374135	1264.73372	-4.1446	-0.0026251	-3.7542	-0.0023778	-7.8988	-0.0050029	633.3716506579397	149.94	3.0119	148.99	147.85	150.86	-0.9512					218	59	5	0	0	0	0.82648	1	12691	12691		15.642	0.94814	1	281260	+		46494	27757	38533	38555	49955	49955					0.11193966579935477
QPPWKALS	8	Unmodified	_QPPWKALS_					0	0	0		ENSG00000159556|ENST00000290759|ISL2	ENSG00000159556|ENST00000290759|ISL2	ENSG00000159556|ENST00000290759|ISL2	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.7591247558594	2	463.758352	925.502152	-2.4236	-0.001124	1.7469	0.00081015	-0.67664	-0.0003138	463.7590491563707	49.674	1.4006	46.532	46.251	47.651	-3.1416					53	26	4	0	0	0	0.7043	1	2819	2819		42.474	0.078325	1	343940			46495	6017	38534	38556	49956	49956					0.03642106105644416
QPPWKALS	8	Unmodified	_QPPWKALS_					0	0	0		ENSG00000159556|ENST00000290759|ISL2	ENSG00000159556|ENST00000290759|ISL2	ENSG00000159556|ENST00000290759|ISL2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	463.758352	925.502152	-1.0223	-0.00047409	1.0129	0.00046976	-0.009346	-4.3343E-06	463.7585997587106	49.34	0.98961	46.579	46.226	47.216	-2.7603	0.023476	-0.00033285	NaN	42.474	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93961			46496	6017	38534	38556							0.03642106105644416
QPPYGIFVI	9	Unmodified	_QPPYGIFVI_					0	0	0		ENSG00000134760|ENST00000257192|DSG1	ENSG00000134760|ENST00000257192|DSG1	ENSG00000134760|ENST00000257192|DSG1	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.7717895507812	2	517.289485	1032.56442	-0.24495	-0.00012671	2.0614	0.0010664	1.8165	0.00093965	517.290845850873	32.379	0.69144	32.379	32.105	32.796	0					38	13	4	0	0	0	0.027462	1	1384	1384		12.959	0	1	825700			46497	4325	38535	38557	49957	49957					0.04943832454000585
QPQARALLAL	10	Unmodified	_QPQARALLAL_					0	0	0		ENST00000549114.5_1_16:779204-779453:+|nuORF;ENSG00000103253|ENST00000389703|HAGHL	ENST00000549114.5_1_16:779204-779453:+|nuORF	ENST00000549114.5_1_16:779204-779453:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	540.83056640625	2	540.82984	1079.64513	2.013	0.0010887	0.75549	0.00040859	2.7684	0.0014973	540.8302826822948	124.41	3.5435	123.37	123.03	126.57	-1.0377					194	67	5	0	0	0	0.59703	1	9743	9743		42.396	9.5837	1	8697600			46498	2299	38536	38558	49958	49958					0.10849113496897189
QPQFGRPLL	9	Unmodified	_QPQFGRPLL_					0	0	0			REV__ENSG00000109758|ENST00000382774|HGFAC	REV__ENSG00000109758|ENST00000382774|HGFAC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.3124389648438	2	528.303458	1054.59236	-0.004257	-2.249E-06	3.7401	0.0019759	3.7359	0.0019737	528.3057980795351	33.47	0.69204	30.682	30.458	31.15	-2.7881					17	13	2	0	0	0	0.027462	1	892	892		30.504	7.4612	1	15705	+		46499	17947	38537	38559	49959	49959					0.06725155434105545
QPQGAPCC	8	Unmodified	_QPQGAPCC_					0	0	0		ENST00000431297.1_1_21:15134673-15136650:+|nuORF;ENSG00000141965|ENST00000269856|FEM1A	ENST00000431297.1_1_21:15134673-15136650:+|nuORF	ENST00000431297.1_1_21:15134673-15136650:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.5547180175781	2	402.162373	802.310194	0.74272	0.00029869	1.8625	0.00074904	2.6053	0.0010477	402.1630150045381	37.784	0.36478	37.784	37.576	37.94	0					12	7	2	0	0	0	0.028476	1	2080	2080		18.324	4.5491	1	52211			46500	4949	38538	38560	49960	49960					-0.09886880908481999
QPQIQGFPK	9	Unmodified	_QPQIQGFPK_					0	0	0		ENST00000600757.5_1_19:46283591-46283717:-|nuORF	ENST00000600757.5_1_19:46283591-46283717:-|nuORF	ENST00000600757.5_1_19:46283591-46283717:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.8139038085938	2	521.787641	1041.56073	-0.62812	-0.00032774	-0.55121	-0.00028761	-1.1793	-0.00061536	521.7876485136734	68.692	0.54663	66.072	65.819	66.366	-2.6203					16	10	2	0	0	0	0.027462	1	5403	5403		51.335	0	1	12432			46501	14218	38539	38561	49961	49961					0.04161162680134112
QPQKRYESNI	10	Unmodified	_QPQKRYESNI_					0	0	0		ENST00000585878.1_1_18:55240476-55253852:-|nuORF;nc|ENSG00000066926|P22830-2|FECH	ENST00000585878.1_1_18:55240476-55253852:-|nuORF	ENST00000585878.1_1_18:55240476-55253852:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	421.77215576171875	3	421.554443	1261.6415	-0.17179	-7.2419E-05	0.61523	0.00025935	0.44344	0.00018693	421.5547255975268	75.411	0.38825	72.18	72.012	72.4	-3.2308					14	7	3	0	0	0	0.027117	1	5933	5933		28.081	10.248	1	13966			46502	14042	38540	38562	49962	49962					0.021143989323718415
QPQKRYESNI	10	Unmodified	_QPQKRYESNI_					0	0	0		ENST00000585878.1_1_18:55240476-55253852:-|nuORF;nc|ENSG00000066926|P22830-2|FECH	ENST00000585878.1_1_18:55240476-55253852:-|nuORF	ENST00000585878.1_1_18:55240476-55253852:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		3	421.554443	1261.6415	0.30256	0.00012755	-0.70513	-0.00029725	-0.40257	-0.0001697	421.55417400150395	74.568	0.44553	72.157	71.944	72.39	-2.4106	-0.011479	-0.00034259	NaN	35.152	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19653			46503	14042	38540	38562							0.021143989323718415
QPQLRLTL	8	Unmodified	_QPQLRLTL_					0	0	0		ENSG00000113211|ENST00000231136|PCDHB6	ENSG00000113211|ENST00000231136|PCDHB6	ENSG00000113211|ENST00000231136|PCDHB6	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.7978820800781	2	484.798009	967.581465	0.49397	0.00023948	-0.72599	-0.00035196	-0.23202	-0.00011248	484.7975416110772	89.898	1.5188	87.323	86.95	88.469	-2.575					67	29	3	0	0	0	0.73205	1	7737	7737		35.618	0.41757	1	295000			46504	2954	38541	38563	49963	49963					0.09637753059791976
QPQLRLTL	8	Unmodified	_QPQLRLTL_					0	0	0		ENSG00000113211|ENST00000231136|PCDHB6	ENSG00000113211|ENST00000231136|PCDHB6	ENSG00000113211|ENST00000231136|PCDHB6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	484.798009	967.581465	1.7091	0.00082856	-1.9141	-0.00092794	-0.20499	-9.9376E-05	484.7969649496892	88.714	1.7769	87.346	86.938	88.715	-1.3676	-0.0023449	-0.001233	NaN	35.618	71	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216090			46505	2954	38541	38563							0.09637753059791976
QPQLRLTL	8	Unmodified	_QPQLRLTL_					0	0	0		ENSG00000113211|ENST00000231136|PCDHB6	ENSG00000113211|ENST00000231136|PCDHB6	ENSG00000113211|ENST00000231136|PCDHB6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	484.798009	967.581465	-0.83496	-0.00040479	0.65923	0.00031959	-0.17573	-8.5194E-05	484.7981801573127	89.475	1.5765	87.377	87.076	88.653	-2.0985	0.028104	0.0012621	NaN	35.618	72	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	336660			46506	2954	38541	38563							0.09637753059791976
QPQPGSSF	8	Unmodified	_QPQPGSSF_					0	0	0			REV__ENST00000355716.4_1_1:2487969-2488041:+|nuORF	REV__ENST00000355716.4_1_1:2487969-2488041:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	424.1993408203125	2	424.200867	846.387182	1.0576	0.00044862	-2.4311	-0.0010313	-1.3736	-0.00058266	424.19976643391453	129.13	1.2356	127.67	127.35	128.58	-1.4565					48	24	3	0	0	0	0.75991	1	12366	12366		21.702	1.2205	1	120730	+		46507	24753	38542	38564	49964	49964					-0.04215623096126819
QPQPKHIKLAK	11	Unmodified	_QPQPKHIKLAK_					0	0	0		ENST00000379225.2_1_9:33935729-33948657:-|nuORF;ENSG00000137073|ENST00000379238|UBAP2	ENST00000379225.2_1_9:33935729-33948657:-|nuORF	ENST00000379225.2_1_9:33935729-33948657:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	430.8843688964844	3	429.934706	1286.78229	0.66203	0.00028463	-0.73944	-0.00031791	-0.077416	-3.3284E-05	429.9343735996316	22.616	0.95847	21.223	20.771	21.73	-1.3935					42	24	3	0	0	0	0.025995	1	254	254		23.378	3.3474	1	25059			46508	4551	38543	38565	49965	49965					0.15037022376463938
QPQPKLSYEN	10	Unmodified	_QPQPKLSYEN_					0	0	0			REV__ENSG00000115816|ENST00000234170|CEBPZ	REV__ENSG00000115816|ENST00000234170|CEBPZ	MULTI-SECPEP	OvCa99_classI_Rep5	1	601.3304443359375	2	602.303852	1202.59315	-0.18355	-0.00011055	0.33182	0.00019986	0.14827	8.9306E-05	602.3037983858784	29.561	0.24968	29.561	29.387	29.636	0					7	4	2	0	0	0	0.027035	1	1066	1066		31.53	0	1	27897	+		46509	18270	38544	38566	49966	49966					-4.094707514923357E-05
QPQPLGVVL	9	Unmodified	_QPQPLGVVL_					0	0	0		ALDH3A2|p.T470Lfs*7|1|0.03|ENSG00000072210|chr17:19671920-19671921|-/TT|frameshift_variant;ENSG00000072210|ENST00000176643|ALDH3A2;nc|ENSG00000072210|P51648-2|ALDH3A2;ENST00000467473.5_1_17:19551570-19555957:+|nuORF	ALDH3A2|p.T470Lfs*7|1|0.03|ENSG00000072210|chr17:19671920-19671921|-/TT|frameshift_variant	ALDH3A2|p.T470Lfs*7|1|0.03|ENSG00000072210|chr17:19671920-19671921|-/TT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.78759765625	2	475.78711	949.559667	1.3095	0.00062303	-1.3805	-0.00065681	-0.070994	-3.3778E-05	475.78620886305947	140.59	1.0255	139.1	138.76	139.78	-1.4952					37	19	3	0	0	0	0.65476	1	13750	13750		25.45	0	1	84644			46510	59	38545	38567	49967	49967					0.08286948311229025
QPQVLQGPA	9	Unmodified	_QPQVLQGPA_					0	0	0		chr1:153628170-153628427|269|39.51|0.44|6.48|+|2|None,S100A1|1	chr1:153628170-153628427|269|39.51|0.44|6.48|+|2|None,S100A1|1	chr1:153628170-153628427|269|39.51|0.44|6.48|+|2|None,S100A1|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	469.8067321777344	2	469.258717	936.50288	2.8632	0.0013436	3.7831	0.0017752	6.6462	0.0031188	469.2602912384455	87.952	0.58339	87.952	87.546	88.13	0					17	13	2	0	0	0	0.027408	1	9316	9316		38.806	5.2906	1	200350			46511	241	38546	38568	49968	49968					0.0320890075471425
QPQWVTGPWL	10	Unmodified	_QPQWVTGPWL_					0	0	0		ENSG00000154736|ENST00000284987|ADAMTS5	ENSG00000154736|ENST00000284987|ADAMTS5	ENSG00000154736|ENST00000284987|ADAMTS5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	404.2440185546875	3	404.545108	1210.61349	1.4717	0.00059537	1.088	0.00044014	2.5597	0.0010355	404.5454319245049	21.226	1.1799	19.888	19.646	20.826	-1.3386					36	23	3	0	0	0	0.026956	1	133	133		25.126	0.89417	1	23406			46512	5750	38547	38569	49969	49969					0.0166112074296052
QPRDLSRAKK	10	Unmodified	_QPRDLSRAKK_					0	0	0			REV__ENSG00000189325|ENST00000437635|BNIP5	REV__ENSG00000189325|ENST00000437635|BNIP5	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.9043884277344	3	400.238678	1197.6942	1.3074	0.00052328	-2.5832	-0.0010339	-1.2758	-0.00051063	400.2375904182865	53.009	0.56095	53.009	52.828	53.389	0					18	12	2	0	0	0	0.026573	1	4206	4206		37.508	0	1	290400	+		46513	22772	38548	38570	49970	49970					0.10326401785823691
QPREPQVYTL	10	Unmodified	_QPREPQVYTL_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211892|P01861-1|IGHG4;chr14:105741795-105742008|90|523.77|0.0|25.64|-|2|IGHG1,None|1;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211897|P01860|IGHG3	nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	MULTI-MSMS	OvCa9_classI_Rep2	2	615.8267211914062	2	615.827495	1229.64044	-0.21741	-0.00013388	-0.36626	-0.00022555	-0.58366	-0.00035943	615.827156884002	80.491	2.1586	78.796	78.025	80.184	-1.6951					139	42	5	0	0	0	0.072307	6	6768	6756;6768;6774;6780;6787;6805		120.87	31.608	1	852640			46514	15299;15300	38549	38571	49971;49972;49973;49974;49975;49976	49972					0.03480184563477451
QPREPQVYTL	10	Unmodified	_QPREPQVYTL_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211892|P01861-1|IGHG4;chr14:105741795-105742008|90|523.77|0.0|25.64|-|2|IGHG1,None|1;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211897|P01860|IGHG3	nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	MULTI-MSMS	OvCa9_classI_Rep3	3	615.8286743164062	2	615.827495	1229.64044	0.98553	0.00060692	-1.4302	-0.00088077	-0.44469	-0.00027385	615.8265545245539	80.841	2.0776	78.519	78.131	80.209	-2.3226					126	40	5	0	0	0	0.10472	4	4443	4443;4452;4457;4476		112.41	7.7072	1	2601000			46515	15299;15300	38549	38571	49977;49978;49979;49980	49977					0.03480184563477451
QPREPQVYTL	10	Unmodified	_QPREPQVYTL_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211893|P01859-1|IGHG2;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211892|P01861-1|IGHG4;chr14:105741795-105742008|90|523.77|0.0|25.64|-|2|IGHG1,None|1;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211897|P01860|IGHG3	nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	MULTI-MSMS	OvCa9_classI_Rep4_	4	615.828857421875	2	615.827495	1229.64044	-0.63901	-0.00039352	0.14286	8.7977E-05	-0.49615	-0.00030554	615.8275027674458	81.228	2.188	78.517	77.714	79.902	-2.7106					119	44	5	0	0	0	0.10472	4	6674	6653;6661;6674;6686		112.41	32.752	1	2431800			46516	15299;15300	38549	38571	49981;49982;49983;49984	49983					0.03480184563477451
QPRHLFRSL	9	Unmodified	_QPRHLFRSL_					0	0	0		ENST00000439158.5_1_6:28303857-28303902:-|nuORF;ENST00000435857.5_1_6:28295255-28303905:-|nuORF	ENST00000439158.5_1_6:28303857-28303902:-|nuORF	ENST00000439158.5_1_6:28303857-28303902:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.0050048828125	2	577.333082	1152.65161	1.5295	0.00088302	-2.3724	-0.0013697	-0.84293	-0.00048665	577.332296001029	126.24	0.23672	126.24	126.09	126.32	0					6	4	2	0	0	0	0.027462	1	14587	14587		19.104	3.0967	1	50348			46517	11870	38550	38572	49985	49985					0.08139051448279133
QPRPLEQET	9	Unmodified	_QPRPLEQET_					0	0	0			REV__ENSG00000111676|ENST00000396684|ATN1	REV__ENSG00000111676|ENST00000396684|ATN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.3185424804688	2	549.28292	1096.55129	-0.82469	-0.00045299	0.34939	0.00019192	-0.47529	-0.00026107	549.2830571289677	39.652	0.33458	39.652	39.505	39.84	0					11	7	3	0	0	0	0.027462	1	2342	2342		19.997	0	1	262290	+		46518	18047	38551	38573	49986	49986					0.006873496039588645
QPRPPLAP	8	Unmodified	_QPRPPLAP_					0	0	0		nc|ENSG00000173253|Q9Y5R5-2|DMRT2;ENSG00000173253|ENST00000358146|DMRT2	nc|ENSG00000173253|Q9Y5R5-2|DMRT2	nc|ENSG00000173253|Q9Y5R5-2|DMRT2	MULTI-SECPEP	OvCa99_classI_Rep5	1	438.55682373046875	2	438.25852	874.502486	0.084439	3.7006E-05	-0.009876	-4.3283E-06	0.074563	3.2678E-05	438.2583552550545	36.51	0.67217	36.51	36.351	37.023	0					31	14	4	0	0	0	0.028476	1	1945	1945		18.324	0	1	643940			46519	7363	38552	38574	49987	49987					0.06021525825519802
QPRPPVTLI	9	Unmodified	_QPRPPVTLI_					0	0	0		ENSG00000127995|ENST00000297273|CASD1;CASD1|p.Y478Ffs*22|1|0.05|ENSG00000127995|chr7:94544486-94544487|-/TCATCCTTCACAAGAACCCTTCAAGGAAGGA|frameshift_variant	ENSG00000127995|ENST00000297273|CASD1	ENSG00000127995|ENST00000297273|CASD1	MULTI-MSMS	OvCa9_classI_Rep3	3	510.8138732910156	2	510.813659	1019.61277	1.2926	0.00066026	-1.3534	-0.00069133	-0.060821	-3.1068E-05	510.8127737609406	122.14	1.1012	121.11	120.85	121.95	-1.0286					43	20	3	0	0	0	0.50149	1	9385	9385		42.396	1.8235	1	84767			46520	3860	38553	38575	49988	49988					0.10374326093915442
QPRPPVTLI	9	Unmodified	_QPRPPVTLI_					0	0	0		ENSG00000127995|ENST00000297273|CASD1;CASD1|p.Y478Ffs*22|1|0.05|ENSG00000127995|chr7:94544486-94544487|-/TCATCCTTCACAAGAACCCTTCAAGGAAGGA|frameshift_variant	ENSG00000127995|ENST00000297273|CASD1	ENSG00000127995|ENST00000297273|CASD1	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	510.813659	1019.61277	-0.86086	-0.00043974	0.63432	0.00032402	-0.22653	-0.00011572	510.8139315738642	121.22	1.0883	121.02	120.8	121.89	-0.19719	-0.063548	0.00072856	NaN	42.396	39	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74700			46521	3860	38553	38575							0.10374326093915442
QPRQAPLF	8	Unmodified	_QPRQAPLF_					0	0	0			REV__ENST00000506588.5_1_4:6271620-6288998:+|nuORF	REV__ENST00000506588.5_1_4:6271620-6288998:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.8104553222656	2	478.769252	955.52395	-0.64926	-0.00031085	1.0997	0.00052651	0.45044	0.00021566	478.7697044675283	58.388	1.112	55.608	55.235	56.347	-2.7801					38	21	2	0	0	0	0.028476	1	4291	4291		33.516	11.813	1	40992	+		46522	26889	38554	38576	49989	49989					0.044409108542254216
QPRQAPLF	8	Unmodified	_QPRQAPLF_					0	0	0			REV__ENST00000506588.5_1_4:6271620-6288998:+|nuORF	REV__ENST00000506588.5_1_4:6271620-6288998:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	478.769252	955.52395	0.18699	8.9524E-05	-0.69603	-0.00033324	-0.50904	-0.00024371	478.7686957452213	59.133	0.74738	55.741	55.451	56.199	-3.392	0.066591	-0.001265	NaN	40.573	27	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61343	+		46523	26889	38554	38576							0.044409108542254216
QPRQAQLRQL	10	Unmodified	_QPRQAQLRQL_					0	0	0			REV__ENST00000510714.1_1_5:466550-472987:-|nuORF	REV__ENST00000510714.1_1_5:466550-472987:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.21929931640625	3	413.242311	1236.7051	0.30701	0.00012687	2.9092	0.0012022	3.2162	0.0013291	413.2434616684679	40.224	1.0433	40.224	39.926	40.969	0					62	22	4	0	0	0	0.026942	1	2436	2436		32.751	0	1	2284300	+		46524	24651	38555	38577	49990	49990					0.09621804160110514
QPRQTQPE	8	Unmodified	_QPRQTQPE_					0	0	0			REV__nc|ENSG00000165185|Q8N8K9-2|KIAA1958	REV__nc|ENSG00000165185|Q8N8K9-2|KIAA1958	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.2733154296875	2	492.24888	982.483208	0.70237	0.00034574	-1.4205	-0.00069924	-0.71813	-0.0003535	492.2486537508931	38.355	0.44524	35.428	35.255	35.7	-2.9264					11	8	2	0	0	0	0.028476	1	1483	1483		31.955	9.995	1	30881	+		46525	28975	38556	38578	49991	49991					-0.008734752560485504
QPRRNHYLK	9	Unmodified	_QPRRNHYLK_					0	0	0		HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|14|1|sense	HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|14|1|sense	HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|14|1|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	405.2386169433594	3	404.563384	1210.66832	1.2121	0.00049036	-4.3178	-0.0017468	-3.1057	-0.0012565	404.5616140957954	45.682	0.85064	42.972	42.647	43.497	-2.7097					27	16	2	0	0	0	0.027462	1	2661	2661		30.318	0	1	37271			46526	14450	38557	38579	49992	49992					0.07141552334201151
QPRRPRPRRQR	11	Unmodified	_QPRRPRPRRQR_					0	0	0			REV__ENST00000583776.1_1_18:2906615-2908961:+|nuORF	REV__ENST00000583776.1_1_18:2906615-2908961:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.6353454589844	3	501.638169	1501.89268	-6.9477	-0.0034852	-1.2904	-0.00064729	-8.238	-0.0041325	501.6376473335916	163.82	2.1567	162.19	160.45	162.61	-1.6336					144	60	3	0	0	0	0.72548	1	16081	16081		9.2118	3.2108	1	101620	+		46527	27837	38558	38580	49993	49993					0.16180680208049125
QPRRRWWWLQR	11	Unmodified	_QPRRRWWWLQR_					0	0	0		ENST00000591247.5_1_17:42113394-42113565:-|nuORF	ENST00000591247.5_1_17:42113394-42113565:-|nuORF	ENST00000591247.5_1_17:42113394-42113565:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.3327026367188	3	556.64292	1666.90693	2.6824	0.0014931	-0.6064	-0.00033755	2.076	0.0011556	556.6422412674342	101.07	0.2124	101.07	100.98	101.19	0					6	4	2	0	0	0	0.026553	1	11234	11234		1.3219	0	1	229250			46528	14116	38559	38581	49994	49994					0.10015332636339735
QPRSAPSLRPK	11	Unmodified	_QPRSAPSLRPK_					0	0	0		ENSG00000164692|ENST00000297268|COL1A2;ENST00000481570.5_1_7:94056869-94058766:+|nuORF;PTBP1-COL1A2|1|fusion	ENSG00000164692|ENST00000297268|COL1A2	ENSG00000164692|ENST00000297268|COL1A2	MULTI-MSMS	OvCa9_classI_Rep2	2	412.91015625	3	412.910561	1235.70985	1.4214	0.00058692	-1.2527	-0.00051726	0.1687	6.9657E-05	412.90997305484035	43.139	2.0837	40.43	40.016	42.099	-2.7097					93	41	4	0	0	0	0.66539	1	2383	2383		38.714	2.3964	1	208390			46529	6477	38560	38582	49995	49995					0.10142688302880742
QPRSQCLSTLV	11	Unmodified	_QPRSQCLSTLV_					0	0	0		ENST00000478403.5_1_2:242436769-242438604:-|nuORF;ENST00000487962.5_1_2:242435079-242438851:-|nuORF;nc|ENSG00000115694|O00506-3|STK25;nc|ENSG00000115694|O00506-2|STK25;ENSG00000115694|ENST00000316586|STK25;ENST00000462953.1_1_2:242436889-242437667:-|nuORF	ENST00000478403.5_1_2:242436769-242438604:-|nuORF	ENST00000478403.5_1_2:242436769-242438604:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	411.2220153808594	3	411.220295	1230.63906	1.1206	0.0004608	-0.074797	-3.0758E-05	1.0458	0.00043004	411.22014700900434	70.695	1.0575	70.695	70.408	71.466	0					78	26	6	0	0	0	0.4646	1	6781	6781		57.149	0	1	10053000			46530	3121	38561	38583	49996	49996					0.03296227203054514
QPRTPSPLVL	10	Unmodified	_QPRTPSPLVL_					0	0	0		nc|ENSG00000130592|P33241-2|LSP1;ENST00000485341.5_1_11:1902588-1908790:+|nuORF;ENSG00000130592|ENST00000311604|LSP1;nc|ENSG00000130592|P33241-3|LSP1	nc|ENSG00000130592|P33241-2|LSP1	nc|ENSG00000130592|P33241-2|LSP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.3314208984375	2	554.329673	1106.64479	-0.56923	-0.00031554	0.474	0.00026275	-0.09522	-5.2783E-05	554.3298167815502	92.44	1.411	89.897	89.517	90.928	-2.5425					70	27	4	0	0	0	0.34811	1	8018	8018		75.043	14.071	1	479050			46531	3996	38562	38584	49997	49997					0.09573693777042536
QPRTPSPLVL	10	Unmodified	_QPRTPSPLVL_					0	0	0		nc|ENSG00000130592|P33241-2|LSP1;ENST00000485341.5_1_11:1902588-1908790:+|nuORF;ENSG00000130592|ENST00000311604|LSP1;nc|ENSG00000130592|P33241-3|LSP1	nc|ENSG00000130592|P33241-2|LSP1	nc|ENSG00000130592|P33241-2|LSP1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	554.329673	1106.64479	-1.5332	-0.00084988	0.7484	0.00041486	-0.78477	-0.00043502	554.3299840874112	91.918	1.0975	89.894	89.584	90.681	-2.0241	-0.012323	0.0022238	NaN	75.043	56	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	523290			46532	3996	38562	38584							0.09573693777042536
QPRYHINQ	8	Unmodified	_QPRYHINQ_					0	0	0			REV__tr|A0A553SQM6|A0A553SQM6_NIACIConjugaltransferproteinOS=NialliacirculansOX=1397GN=CEQ21_07925PE=4SV=1	REV__tr|A0A553SQM6|A0A553SQM6_NIACIConjugaltransferproteinOS=NialliacirculansOX=1397GN=CEQ21_07925PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.7030639648438	2	528.27269	1054.53083	0.54005	0.00028529	-0.2858	-0.00015098	0.25424	0.00013431	528.2740114889762	139.45	0.57541	137.96	137.78	138.36	-1.4952					12	10	2	0	0	0	0.028476	1	13575	13575		18.324	0	1	21926	+		46533	30646	38563	38585	49998	49998					0.005742237347703849
QPSKDKKK	8	Unmodified	_QPSKDKKK_					0	0	0			REV__L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|52|2|sense	REV__L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|52|2|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.7845458984375	2	479.787641	957.56073	1.0491	0.00050334	-1.3086	-0.00062786	-0.25953	-0.00012452	479.7869235806788	36.612	1.0457	33.72	33.546	34.591	-2.8925					33	20	2	0	0	0	0.70469	1	1269	1269		42.396	3.1433	1	242730	+		46534	28396	38564	38586	49999	49999					0.08025162680144149
QPSLSLTIK	9	Unmodified	_QPSLSLTIK_					0	0	0		tr|A0A553ST98|A0A553ST98_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04570PE=3SV=1	tr|A0A553ST98|A0A553ST98_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04570PE=3SV=1	tr|A0A553ST98|A0A553ST98_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04570PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.7851867675781	2	493.797675	985.580796	1.4508	0.00071639	0.56371	0.00027836	2.0145	0.00099475	493.79799423869446	41.862	0.29589	39.152	39.078	39.374	-2.7097					8	5	2	0	0	0	0.027411	1	2213	2213		87.696	5.4559	1	7204.8			46535	34471	38565	38587	50000	50000					0.08742913620096715
QPSMSSAAHLL	11	Unmodified	_QPSMSSAAHLL_					0	0	0		ENST00000512792.2_1_12:112191278-112193633:+|nuORF	ENST00000512792.2_1_12:112191278-112193633:+|nuORF	ENST00000512792.2_1_12:112191278-112193633:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	571.28759765625	2	571.287148	1140.55974	1.8376	0.0010498	1.2458	0.00071169	3.0833	0.0017615	571.2878131079653	27.213	0.34761	24.503	24.394	24.742	-2.7097					12	7	2	0	0	0	0.72505	1	454	454		14.865	3.3539	1	21803			46536	13000	38566	38588	50001	50001					-0.004914197510743179
QPSPLAKPI	9	Unmodified	_QPSPLAKPI_					0	0	0			REV__ZNF256|p.R517Sfs*103|1|0.06|ENSG00000152454|chr19:57941257-57941257|C/-|frameshift_variant	REV__ZNF256|p.R517Sfs*103|1|0.06|ENSG00000152454|chr19:57941257-57941257|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	476.776123046875	2	475.78711	949.559667	2.004	0.00095347	-2.0013	-0.00095218	0.0027043	1.2867E-06	475.78603715951624	113.17	1.0633	112.09	111.81	112.87	-1.0753					39	20	3	0	0	0	0.027462	1	8393	8393		47.657	35.45	1	130030	+		46537	20285	38567	38589	50002	50002					0.08286948311229025
QPSPLAKPI	9	Unmodified	_QPSPLAKPI_					0	0	0			REV__ZNF256|p.R517Sfs*103|1|0.06|ENSG00000152454|chr19:57941257-57941257|C/-|frameshift_variant	REV__ZNF256|p.R517Sfs*103|1|0.06|ENSG00000152454|chr19:57941257-57941257|C/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	475.78711	949.559667	0.4049	0.00019265	-0.5133	-0.00024422	-0.10839	-5.1572E-05	475.78675013584217	112.28	1.0849	112.15	111.78	112.87	-0.12174	0.030362	0.0007436	NaN	31.53	48	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117310	+		46538	20285	38567	38589							0.08286948311229025
QPSTSSSIIY	10	Unmodified	_QPSTSSSIIY_					0	0	0		nc|ENSG00000135679|Q00987-4|MDM2;nc|ENSG00000135679|Q00987-3|MDM2;nc|ENSG00000135679|Q00987-2|MDM2;nc|ENSG00000135679|Q00987-5|MDM2;nc|ENSG00000135679|Q00987-8|MDM2;nc|ENSG00000135679|Q00987-10|MDM2;nc|ENSG00000135679|Q00987-9|MDM2;nc|ENSG00000135679|Q00987|MDM2;ENSG00000135679|ENST00000258149|MDM2;nc|ENSG00000135679|Q00987-6|MDM2	nc|ENSG00000135679|Q00987-4|MDM2	nc|ENSG00000135679|Q00987-4|MDM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.754150390625	2	541.771854	1081.52915	2.8394	0.0015383	3.1257	0.0016934	5.9651	0.0032317	541.773456144683	116.03	0.50485	116.03	115.82	116.32	0					17	10	3	0	0	0	0.026849	1	13291	13291		40.778	0	1	180290			46539	4400	38568	38590	50003	50003					-0.008348748644721127
QPSWLKNI	8	Unmodified	_QPSWLKNI_					0	0	0		nc|ENSG00000172831|O00748-2|CES2;ENST00000568470.5_1_16:66969809-66977925:+|nuORF;ENSG00000172831|ENST00000317091|CES2;nc|ENSG00000172831|O00748-5|CES2;nc|ENSG00000172831|O00748-4|CES2;ENST00000568347.1_1_16:66976525-66977275:+|nuORF	nc|ENSG00000172831|O00748-2|CES2	nc|ENSG00000172831|O00748-2|CES2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.259521484375	2	493.276909	984.539266	-0.96876	-0.00047787	0.85927	0.00042386	-0.10949	-5.4009E-05	493.2772621073246	72.177	0.92532	68.721	68.412	69.337	-3.4563					47	18	4	0	0	0	0.028476	1	5554	5554		20.947	0.95016	1	262340			46540	7322	38569	38591	50004	50004					0.04637777651419128
QPSWLKNI	8	Unmodified	_QPSWLKNI_					0	0	0		nc|ENSG00000172831|O00748-2|CES2;ENST00000568470.5_1_16:66969809-66977925:+|nuORF;ENSG00000172831|ENST00000317091|CES2;nc|ENSG00000172831|O00748-5|CES2;nc|ENSG00000172831|O00748-4|CES2;ENST00000568347.1_1_16:66976525-66977275:+|nuORF	nc|ENSG00000172831|O00748-2|CES2	nc|ENSG00000172831|O00748-2|CES2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	493.276909	984.539266	0.9598	0.00047345	-0.93932	-0.00046334	0.020482	1.0103E-05	493.2762609555499	71.006	1.2032	68.435	68.166	69.369	-2.5707	-0.092531	-0.00076625	NaN	20.947	48	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215750			46541	7322	38569	38591							0.04637777651419128
QPSWLKNI	8	Unmodified	_QPSWLKNI_					0	0	0		nc|ENSG00000172831|O00748-2|CES2;ENST00000568470.5_1_16:66969809-66977925:+|nuORF;ENSG00000172831|ENST00000317091|CES2;nc|ENSG00000172831|O00748-5|CES2;nc|ENSG00000172831|O00748-4|CES2;ENST00000568347.1_1_16:66976525-66977275:+|nuORF	nc|ENSG00000172831|O00748-2|CES2	nc|ENSG00000172831|O00748-2|CES2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	493.276909	984.539266	0.13326	6.5736E-05	-0.12457	-6.1446E-05	0.0086971	4.2901E-06	493.27671892743166	71.146	1.3901	68.426	68.163	69.553	-2.7196	-0.10115	3.7545E-05	NaN	20.947	54	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143160			46542	7322	38569	38591							0.04637777651419128
QPTDIQPDI	9	Unmodified	_QPTDIQPDI_					0	0	0		ENSG00000089775|ENST00000608382|ZBTB25	ENSG00000089775|ENST00000608382|ZBTB25	ENSG00000089775|ENST00000608382|ZBTB25	MULTI-SECPEP	OvCa9_classI_Rep3	3	512.8117065429688	2	513.758746	1025.50294	-0.20744	-0.00010657	-3.8834	-0.0019951	-4.0908	-0.0021017	514.2581092468877	94.636	0.90399	92.74	92.307	93.211	-1.8956					37	17	4	0	0	0	0.027462	1	6119	6119		42.396	1.618	1	21777			46543	1828	38570	38592	50005	50005					-0.00879144035934587
QPTGGKARL	9	Unmodified	_QPTGGKARL_					0	0	0		ENST00000559763.1_1_15:63418217-63447889:-|nuORF;ENST00000402023.1_1_6:74328227-74328317:+|nuORF;ENSG00000185088|ENST00000330964|RPS27L;ENSG00000177954|ENST00000651669|RPS27;ENST00000482846.1_1_15:63447754-63448774:-|nuORF	ENST00000559763.1_1_15:63418217-63447889:-|nuORF	ENST00000559763.1_1_15:63418217-63447889:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	464.271728515625	2	464.272158	926.529764	-1.424	-0.00066111	1.5107	0.00070138	0.086751	4.0276E-05	464.272712746856	33.99	1.1371	31.28	30.972	32.109	-2.7097					36	22	2	0	0	0	0.63422	1	1259	1259		27.882	3.6795	1	188940			46544	7721	38571	38593	50006	50006					0.06356009365879345
QPTHRIHGF	9	Unmodified	_QPTHRIHGF_					0	0	0		nc|ENSG00000167419|P22079-2|LPO;ENSG00000167419|ENST00000262290|LPO	nc|ENSG00000167419|P22079-2|LPO	nc|ENSG00000167419|P22079-2|LPO	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.8428344726562	2	546.788507	1091.56246	-0.39486	-0.0002159	-2.0629	-0.001128	-2.4577	-0.0013439	547.2895645014474	43.314	0.25269	43.314	43.1	43.353	0					8	5	2	0	0	0	0.027462	1	2832	2832		24.203	0	1	97780			46545	6789	38572	38594	50007	50007					0.020342164887551917
QPTIPIVGIVA	11	Unmodified	_QPTIPIVGIVA_					0	0	0		nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;ENST00000463348.5_1_6:30229165-30231201:+|nuORF;ENST00000482052.5_1_6:30229165-30260340:+|nuORF	nc|ENSG00000204642|P30511|HLA-F	nc|ENSG00000204642|P30511|HLA-F	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.8204345703125	2	554.342249	1106.66995	1.1701	0.00064865	-3.9442	-0.0021864	-2.7741	-0.0015378	554.3399028831741	37.26	1.048	34.368	34.092	35.14	-2.8925					53	20	4	0	0	0	0.026007	1	1379	1379		24.519	10.382	1	225750			46546	9016	38573	38595	50008	50008					0.12087748579619984
QPTLPRPLP	9	Unmodified	_QPTLPRPLP_					0	0	0		ENST00000312579.3_1_11:65658118-65658181:+|nuORF	ENST00000312579.3_1_11:65658118-65658181:+|nuORF	ENST00000312579.3_1_11:65658118-65658181:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	509.8061828613281	2	509.805834	1017.59712	0.20522	0.00010462	-0.48984	-0.00024972	-0.28462	-0.0001451	509.8054777946676	71.178	1.5389	68.499	68.203	69.742	-2.6795					58	30	2	0	0	0	0.44568	1	3303	3303		47.657	0	1	358630			46547	10310	38574	38596	50009	50009					0.08902039576844345
QPTRMRKN	8	Unmodified	_QPTRMRKN_					0	0	0		L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|119|3|sense	L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|119|3|sense	L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|119|3|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.261962890625	2	515.782367	1029.55018	-0.27536	-0.00014203	-4.2004	-0.0021665	-4.4757	-0.0023085	515.7797991182715	47.129	1.1134	44.057	43.81	44.923	-3.0724					53	21	4	0	0	0	0.028476	1	2554	2554		37.159	10.466	1	138250			46548	14651	38575	38597	50010	50010					0.036588567540547956
QPTRMRKN	8	Unmodified	_QPTRMRKN_					0	0	0		L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|119|3|sense	L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|119|3|sense	L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|119|3|sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.782367	1029.55018	-0.32129	-0.00016571	-3.5627	-0.0018376	-3.884	-0.0020033	515.7806507327218	46.728	1.1406	44.018	43.794	44.935	-2.7097	-0.019541	0.00053407	NaN	37.159	27	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31295			46549	14651	38575	38597							0.036588567540547956
QPTRVAAWL	9	Unmodified	_QPTRVAAWL_					0	0	0		ENST00000347310.9_1_1:67632156-67632192:+|nuORF	ENST00000347310.9_1_1:67632156-67632192:+|nuORF	ENST00000347310.9_1_1:67632156-67632192:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	521.2970581054688	2	521.295633	1040.57671	1.4159	0.00073811	-0.82041	-0.00042768	0.59551	0.00031044	521.2951817501133	137.78	3.6292	137.78	135.69	139.32	0					166	76	5	0	0	0	0.40667	1	16108	16108		51.335	6.9583	1	5949400			46550	10629	38576	38598	50011	50011					0.058048689170163925
QPTVISIML	9	Unmodified	_QPTVISIML_					0	0	0		ENST00000239231.6_1_5:167979898-167979994:-|nuORF	ENST00000239231.6_1_5:167979898-167979994:-|nuORF	ENST00000239231.6_1_5:167979898-167979994:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.28997802734375	2	501.288628	1000.5627	1.9923	0.0009987	1.568	0.000786	3.5602	0.0017847	501.28921225940996	136.36	2.694	134.82	133.46	136.15	-1.5437					126	54	3	0	0	0	0.67509	1	13265	13265		23.042	0	1	86011			46551	9755	38577	38599	50012	50012					0.06244455373735036
QPTVRITEL	9	Unmodified	_QPTVRITEL_					0	0	0		ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF;ENSG00000102978|ENST00000219252|POLR2C;ENST00000567982.5_1_16:57496627-57503684:+|nuORF;ENST00000563115.5_1_16:57496627-57503283:+|nuORF	ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000563115.5_1_16:57496627-57503283:+|nuORF	ENST00000564651.5_1_16:57496627-57504171:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	528.8056030273438	2	528.806031	1055.59751	0.16667	8.8138E-05	-1.3196	-0.00069779	-1.1529	-0.00060965	528.8052832238033	86.997	1.5544	85.565	85.122	86.676	-1.4311					69	30	3	0	0	0	0.53483	1	7591	7591		39.253	2.2244	1	385910			46552	2272;13782	38578	38600	50013	50013					0.07193414506014051
QPTVRITEL	9	Unmodified	_QPTVRITEL_					0	0	0		ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000562953.5_1_16:57496627-57504105:+|nuORF;ENSG00000102978|ENST00000219252|POLR2C;ENST00000567982.5_1_16:57496627-57503684:+|nuORF;ENST00000563115.5_1_16:57496627-57503283:+|nuORF	ENST00000564651.5_1_16:57496627-57504171:+|nuORF;ENST00000563115.5_1_16:57496627-57503283:+|nuORF	ENST00000564651.5_1_16:57496627-57504171:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	528.8067626953125	2	528.806031	1055.59751	-0.9416	-0.00049792	0.28085	0.00014852	-0.66075	-0.00034941	528.8061375588696	87.696	1.6773	85.519	84.884	86.561	-2.1768					72	32	4	0	0	0	0.3076	1	5292	5292		62.107	1.1355	1	611830			46553	2272;13782	38578	38600	50014	50014					0.07193414506014051
QPVDRIAR	8	Unmodified	_QPVDRIAR_					0	0	0		ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.8080749511719	2	477.777608	953.540663	0.96138	0.00045933	-1.9588	-0.00093587	-0.99742	-0.00047654	477.77649785896676	37.743	0.69775	34.851	34.591	35.289	-2.8925					23	13	2	0	0	0	0.028476	1	1412	1412		47.657	5.2612	1	25239			46554	4121	38579	38601	50015	50015					0.0620341174017085
QPVGAMYAAL	10	Unmodified	_QPVGAMYAAL_					0	0	0		tr|A0A7D6VQD7|A0A7D6VQD7_9CLOTNitrogenasemolybdenum-ironproteinbetachainOS=ClostridiumintestinaleOX=36845GN=nifKPE=3SV=1	tr|A0A7D6VQD7|A0A7D6VQD7_9CLOTNitrogenasemolybdenum-ironproteinbetachainOS=ClostridiumintestinaleOX=36845GN=nifKPE=3SV=1	tr|A0A7D6VQD7|A0A7D6VQD7_9CLOTNitrogenasemolybdenum-ironproteinbetachainOS=ClostridiumintestinaleOX=36845GN=nifKPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.7649841308594	2	510.762778	1019.511	-1.1759	-0.0006006	4.4765	0.0022864	3.3006	0.0016858	510.76498418991224	42.625	1.2582	39.644	39.41	40.668	-2.9804					60	23	3	0	0	0	0.64063	1	2027	2027		37.159	5.2042	1	688700			46555	34844	38580	38602	50016	50016					0.002027116798217321
QPVHILFH	8	Unmodified	_QPVHILFH_					0	0	0			REV__CON__Q0VCM5	REV__CON__Q0VCM5	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.78240966796875	2	495.779619	989.544686	-1.0728	-0.00053187	3.592	0.0017809	2.5192	0.001249	495.7812739834416	44.548	2.2506	41.51	40.762	43.013	-3.0385					117	43	4	0	0	0	0.72134	1	2241	2241		39.021	0	1	1208700	+	+	46556	16200	38581	38603	50017	50017					0.04949501233909359
QPVKKRSL	8	Unmodified	_QPVKKRSL_					0	0	0			REV__nc|ENSG00000162222|Q8N5M4-2|TTC9C	REV__nc|ENSG00000162222|Q8N5M4-2|TTC9C	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.3057556152344	2	478.306001	954.597449	-0.57959	-0.00027722	-0.42308	-0.00020236	-1.0027	-0.00047958	478.30577377690133	40.613	2.2753	37.659	37.421	39.697	-2.9541					122	43	5	0	0	0	0.53531	1	1796	1796		73.975	2.0973	1	2613300	+		46557	28961	38582	38604	50018	50018					0.11833459296701676
QPVKVVFF	8	Unmodified	_QPVKVVFF_					0	0	0		ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MSMS	OvCa99_classI_Rep5	1	482.2867736816406	2	482.286746	962.558939	1.6377	0.00078983	0.3755	0.0001811	2.0132	0.00097093	482.2868322644305	148.66	0.73448	148.66	148.42	149.16	0					19	14	2	0	0	0	0.75991	1	17397	17397		21.702	1.2205	1	51648			46558	9585	38583	38605	50019	50019					0.07616153662195302
QPVLLIGVIL	10	Unmodified	_QPVLLIGVIL_					0	0	0			REV__ENSG00000155850|ENST00000286298|SLC26A2	REV__ENSG00000155850|ENST00000286298|SLC26A2	MULTI-SECPEP	OvCa9_classI_Rep2	2	532.8082885742188	2	532.857535	1063.70052	-1.6329	-0.00087012	0.97817	0.00052122	-0.65476	-0.00034889	532.858957355418	76.296	0.21025	74.442	74.308	74.518	-1.854					5	3	2	0	0	0	0.026697	1	6309	6309		45.952	35.086	1	4842.2	+		46559	20444	38584	38606	50020	50020					0.17121526964660916
QPVMTPCKI	9	Unmodified	_QPVMTPCKI_					0	0	0		nc|ENSG00000156970|O60566-2|BUB1B;ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B	nc|ENSG00000156970|O60566-2|BUB1B	nc|ENSG00000156970|O60566-2|BUB1B	MSMS	OvCa9_classI_Rep4_	4	508.7665100097656	2	508.767006	1015.51946	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.634	1	33.742	33.242	34.242	-2.8925								0	0	0	0.17131	1	1280	1280		47.657	3.2801	1				46560	5866	38585	38607	50021	50021					0.01231942324807278
QPVQNLLL	8	Unmodified	_QPVQNLLL_					0	0	0		ENSG00000185033|ENST00000411539|SEMA4B;ENST00000561252.1_1_15:90768241-90768761:+|nuORF;nc|ENSG00000185033|Q9NPR2-2|SEMA4B	ENSG00000185033|ENST00000411539|SEMA4B	ENSG00000185033|ENST00000411539|SEMA4B	MULTI-SECPEP	OvCa9_classI_Rep3	3	462.324462890625	2	462.779285	923.544017	-0.80175	-0.00037104	1.1778	0.00054505	0.37602	0.00017402	462.77963763982666	90.842	1.319	88.761	88.413	89.732	-2.0805					55	25	3	0	0	0	0.028476	1	5767	5767		60.294	0	1	130250			46561	8216	38586	38608	50022	50022					0.0791866179419003
QPVQNLLL	8	Unmodified	_QPVQNLLL_					0	0	0		ENSG00000185033|ENST00000411539|SEMA4B;ENST00000561252.1_1_15:90768241-90768761:+|nuORF;nc|ENSG00000185033|Q9NPR2-2|SEMA4B	ENSG00000185033|ENST00000411539|SEMA4B	ENSG00000185033|ENST00000411539|SEMA4B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	462.779285	923.544017	1.6745	0.00077492	-1.5769	-0.00072977	0.097549	4.5144E-05	462.77844748723703	90.217	1.1966	88.915	88.532	89.728	-1.302	0.066304	-0.0013097	NaN	60.294	46	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81850			46562	8216	38586	38608							0.0791866179419003
QPVSRKKLQ	9	Unmodified	_QPVSRKKLQ_					0	0	0		ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	ENSG00000157456|ENST00000288207|CCNB2	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.3350830078125	2	542.33529	1082.65603	0.34726	0.00018833	-0.58303	-0.0003162	-0.23577	-0.00012787	542.3347918687969	36.811	1.0958	33.918	33.645	34.741	-2.8925					42	21	2	0	0	0	0.3249	1	1316	1316		60.118	0	1	213790			46563	5893	38587	38609	50023	50023					0.1180051587118669
QPVVTLLLAR	10	Unmodified	_QPVVTLLLAR_					0	0	0		sp|Q6SWD5|IR01_HCMVMProteinRL1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL1PE=1SV=1;sp|P09710|IR01_HCMVAUncharacterizedproteinHKLF1OS=Humancytomegalovirus(strainAD169)OX=10360PE=3SV=1	sp|Q6SWD5|IR01_HCMVMProteinRL1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL1PE=1SV=1	sp|Q6SWD5|IR01_HCMVMProteinRL1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL1PE=1SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.353759765625	2	555.355691	1108.69683	-5.7234	-0.0031785	1.8077	0.0010039	-3.9157	-0.0021746	555.3566390635189	159.36	1.8651	157.77	157.41	159.27	-1.5858					127	42	5	0	0	0	0.82648	1	15706	15706		15.642	0	1	1093300			46564	32885	38588	38610	50024	50024					0.14682857190814502
QPVVWREI	8	Unmodified	_QPVVWREI_					0	0	0		ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.7894287109375	2	513.790184	1025.56581	0.50225	0.00025805	-0.19654	-0.00010098	0.30572	0.00015707	513.7899765240271	32.531	1.3336	29.836	29.515	30.848	-2.6954					79	29	4	0	0	0	0.68714	1	827	827		45.952	0	1	161300			46565	2382	38589	38611	50025	50025					0.05405466542742943
QPVWLSVDF	9	Unmodified	_QPVWLSVDF_					0	0	0		ENST00000464183.1_1_17:41121167-41123746:-|nuORF	ENST00000464183.1_1_17:41121167-41123746:-|nuORF	ENST00000464183.1_1_17:41121167-41123746:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.3075561523438	2	545.782025	1089.5495	0.0029182	1.5927E-06	-0.012927	-7.0552E-06	-0.010008	-5.4625E-06	545.7837753512931	46.537	0.43964	46.537	46.369	46.809	0					13	9	2	0	0	0	0.027462	1	3312	3312		10.866	0.6003	1	437100			46566	12243	38590	38612	50026	50026					0.008303405860033308
QPWLHPVAAP	10	Unmodified	_QPWLHPVAAP_					0	0	0		ENST00000564629.1_1_16:31469444-31469618:-|nuORF	ENST00000564629.1_1_16:31469444-31469618:-|nuORF	ENST00000564629.1_1_16:31469444-31469618:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.8473510742188	2	558.303458	1114.59236	3.0099	0.0016805	2.9054	0.0016221	5.9153	0.0033025	558.3059088846475	86.396	0.40584	86.396	86.231	86.637	0					14	9	2	0	0	0	0.026697	1	9104	9104		37.159	4.3467	1	523900			46567	13811	38591	38613	50027	50027					0.03965155434070766
QPWRKLPE	8	Unmodified	_QPWRKLPE_					0	0	0		ENSG00000124203|ENST00000371030|ZNF831	ENSG00000124203|ENST00000371030|ZNF831	ENSG00000124203|ENST00000371030|ZNF831	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.3573608398438	2	527.295633	1052.57671	0.62171	0.00032783	3.9749	0.002096	4.5966	0.0024238	527.2980715902273	86.143	1.3334	83.497	82.848	84.182	-2.6463					37	26	2	0	0	0	0.028476	1	7202	7202		79.939	0.48821	1	53562			46568	3632	38592	38614	50028	50028					0.05252868917023079
QPWRLGGPL	9	Unmodified	_QPWRLGGPL_					0	0	0			REV__ENST00000527372.6_2_17:27494000-27507378:-|nuORF	REV__ENST00000527372.6_2_17:27494000-27507378:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	512.81005859375	2	512.290351	1022.56615	-0.10825	-5.5454E-05	-0.73483	-0.00037645	-0.84308	-0.0004319	512.2901658176098	93.699	0.36665	92.599	92.434	92.801	-1.0995					9	6	2	0	0	0	0.027462	1	8373	8373		30.504	7.4669	1	16347	+		46569	27151	38593	38615	50029	50029					0.05576886262622338
QPWRLGGPL	9	Unmodified	_QPWRLGGPL_					0	0	0			REV__ENST00000527372.6_2_17:27494000-27507378:-|nuORF	REV__ENST00000527372.6_2_17:27494000-27507378:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	512.8117065429688	2	512.290351	1022.56615	-0.52803	-0.00027051	1.3392	0.00068605	0.81115	0.00041554	512.2904681164372	94.432	0.45483	92.536	92.358	92.813	-1.8956					15	8	2	0	0	0	0.027462	1	6119	6119		40.573	3.4135	1	39732	+		46570	27151	38593	38615	50030	50030					0.05576886262622338
QPWRLGGPL	9	Unmodified	_QPWRLGGPL_					0	0	0			REV__ENST00000527372.6_2_17:27494000-27507378:-|nuORF	REV__ENST00000527372.6_2_17:27494000-27507378:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	512.290351	1022.56615	2.114	0.001083	-1.3029	-0.00066745	0.81117	0.00041555	512.2898401148947	92.807	0.33205	92.807	92.594	92.926	0	0.17459	-0.0013711	NaN	23.042	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97374	+		46571	27151	38593	38615							0.05576886262622338
QPWTQTLQLK	10	Unmodified	_QPWTQTLQLK_					0	0	0		ENSG00000158714|ENST00000289707|SLAMF8	ENSG00000158714|ENST00000289707|SLAMF8	ENSG00000158714|ENST00000289707|SLAMF8	MULTI-MSMS	OvCa9_classI_Rep2	2	414.89862060546875	3	414.89955	1241.67682	0.68431	0.00028392	-3.7605	-0.0015602	-3.0762	-0.0012763	414.8979200056025	40.385	1.1346	37.675	37.402	38.536	-2.7097					61	22	4	0	0	0	0.55109	2	2034	2029;2034		47.96	20.912	1	373030			46572	5970	38594	38616	50031;50032	50032					0.06565061460173638
QPWTQTLQLK	10	Unmodified	_QPWTQTLQLK_					0	0	0		ENSG00000158714|ENST00000289707|SLAMF8	ENSG00000158714|ENST00000289707|SLAMF8	ENSG00000158714|ENST00000289707|SLAMF8	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.8982238769531	3	414.89955	1241.67682	-0.61426	-0.00025485	-2.8509	-0.0011828	-3.4651	-0.0014377	414.89833538585395	40.717	2.0295	37.763	37.213	39.242	-2.9541					105	38	5	0	0	0	0.45953	1	1786	1786		59.931	14.023	1	1295000			46573	5970	38594	38616	50033	50033					0.06565061460173638
QPWTWRPDSCC	11	Unmodified	_QPWTWRPDSCC_					0	0	0		ENST00000401705.5_1_19:46003797-46005455:+|nuORF	ENST00000401705.5_1_19:46003797-46005455:+|nuORF	ENST00000401705.5_1_19:46003797-46005455:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	459.24639892578125	3	460.193752	1377.55943	-0.3903	-0.00017961	-2.8377	-0.0013059	-3.228	-0.0014855	460.19234038332394	48.54	0.47916	48.54	48.372	48.851	0					16	10	2	0	0	0	0.026204	1	3588	3588		16.53	3.5724	1	199730			46574	11420	38595	38617	50034	50034					-0.11425162742557404
QPYADLLWS	9	Unmodified	_QPYADLLWS_					0	0	0		tr|A0A553SRB4|A0A553SRB4_NIACIExtracellularsolute-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_00725PE=4SV=1	tr|A0A553SRB4|A0A553SRB4_NIACIExtracellularsolute-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_00725PE=4SV=1	tr|A0A553SRB4|A0A553SRB4_NIACIExtracellularsolute-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_00725PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.3096923828125	2	546.771657	1091.52876	-0.26501	-0.0001449	-0.86529	-0.00047312	-1.1303	-0.00061801	546.7712298217255	51.288	0.63312	51.288	51.036	51.669	0					24	14	2	0	0	0	0.027343	1	3913	3913		58.782	0	1	155190			46575	34246	38596	38618	50035	50035					-0.013342497936719155
QPYAELLWS	9	Unmodified	_QPYAELLWS_					0	0	0		tr|A0A553SRD6|A0A553SRD6_NIACIExtracellularsolute-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_00730PE=4SV=1	tr|A0A553SRD6|A0A553SRD6_NIACIExtracellularsolute-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_00730PE=4SV=1	tr|A0A553SRD6|A0A553SRD6_NIACIExtracellularsolute-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_00730PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	553.780029296875	2	553.779482	1105.54441	0.81704	0.00045246	4.2856	0.0023733	5.1027	0.0028258	553.7816142945695	152.56	0.884	152.56	152.21	153.1	0					43	21	3	0	0	0	0.36502	1	17859	17859		55.504	0.72789	1	230790			46576	34252	38597	38619	50036	50036					-0.004139632766282375
QPYGSTERQS	10	Unmodified	_QPYGSTERQS_					0	0	0			REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|90|2|sense	REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|90|2|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	575.8519287109375	2	576.767634	1151.52072	1.037	0.00059811	-1.4742	-0.00085026	-0.43719	-0.00025216	576.7670312820784	88.496	1.276	87.129	86.399	87.675	-1.3676					42	25	2	0	0	0	0.02676	1	7689	7689		41.427	3.6151	1	46189	+		46577	28555	38598	38620	50037	50037					-0.048984287810981186
QPYGSTERQS	10	Unmodified	_QPYGSTERQS_					0	0	0			REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|90|2|sense	REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|90|2|sense	MULTI-MATCH	OvCa99_classI_Rep5	1		2	576.767634	1151.52072	2.1305	0.0012288	4.158	0.0023982	6.2885	0.003627	576.7699721022185	86.789	0.50162	86.789	86.553	87.054	0	-0.050515	0.0056425	NaN	27.047	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217160	+		46578	28555	38598	38620							-0.048984287810981186
QPYLNITI	8	Unmodified	_QPYLNITI_					0	0	0		tr|A0A7D7A3P4|A0A7D7A3P4_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22425PE=4SV=1	tr|A0A7D7A3P4|A0A7D7A3P4_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22425PE=4SV=1	tr|A0A7D7A3P4|A0A7D7A3P4_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22425PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	481.2752380371094	2	481.271293	960.528032	2.2897	0.001102	-0.47483	-0.00022852	1.8149	0.00087344	481.2709656839835	113.08	0.50091	113.08	112.83	113.33	0					17	10	2	0	0	0	0.66992	1	12888	12888		49.442	1.5259	1	239180			46579	36123	38599	38621	50038	50038					0.04618955557270965
QPYRLADD	8	Unmodified	_QPYRLADD_					0	0	0		ENSG00000136367|ENST00000419474|ZFHX2;nc|ENSG00000136367|Q9C0A1-2|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	ENSG00000136367|ENST00000419474|ZFHX2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	489.2939147949219	2	489.237981	976.461409	0.41134	0.00020124	-0.54225	-0.00026529	-0.13091	-6.4047E-05	489.2375124686593	61.229	0.49407	57.799	57.544	58.038	-3.43					14	9	2	0	0	0	0.028476	1	4180	4180		68.787	10.005	1	35481			46580	4484	38600	38622	50039	50039					-0.027762800046389202
QQAEAESC	8	Unmodified	_QQAEAESC_					0	0	0			REV__ENSG00000166398|ENST00000299505|GARRE1	REV__ENSG00000166398|ENST00000299505|GARRE1	MULTI-MSMS	OvCa9_classI_Rep3	3	433.17169189453125	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.7224	1	1575	1575		38.806	6.8513	1	60065	+		46581	21188	38601	38623	50040	50040					-0.10924467452787212
QQAPTLNLL	9	Unmodified	_QQAPTLNLL_					0	0	0			REV__ENSG00000074047|ENST00000361492|GLI2	REV__ENSG00000074047|ENST00000361492|GLI2	MULTI-MSMS	OvCa9_classI_Rep2	2	499.2879333496094	2	499.287474	996.560395	-0.010404	-5.1946E-06	-0.93647	-0.00046757	-0.94688	-0.00047276	499.28693766889194	79.522	1.6653	77.812	76.789	78.454	-1.7103					98	32	4	0	0	0	0.33652	1	6690	6690		58.782	0	1	810360	+		46582	16945	38602	38624	50041	50041					0.061977429602734446
QQATKKCSVKG	11	Unmodified	_QQATKKCSVKG_					0	0	0			REV__ENSG00000174306|ENST00000683867|ZHX3	REV__ENSG00000174306|ENST00000683867|ZHX3	MULTI-MSMS	OvCa99_classI_Rep5	1	589.3234252929688	2	589.321522	1176.62849	2.0722	0.0012212	-1.1799	-0.00069536	0.89228	0.00052584	589.3218974033099	85.608	1.8452	85.608	85.127	86.972	0					82	44	3	0	0	0	0.65063	1	9005	9005		40.058	0.80534	1	2160600	+		46583	21824	38603	38625	50042	50042					0.047242445486062934
QQCISSSLLL	10	Carbamidomethyl (C)	_QQC(Carbamidomethyl (C))ISSSLLL_	QQC(1)ISSSLLL		QQC(90)ISSSLLL		0	1	0		nc|ENSG00000183530|Q5THK1-2|PRR14L;nc|ENSG00000183530|Q5THK1-4|PRR14L;ENSG00000183530|ENST00000327423|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	nc|ENSG00000183530|Q5THK1-2|PRR14L	MULTI-MSMS	OvCa9_classI_Rep3	3	574.7997436523438	2	574.802631	1147.59071	-0.85924	-0.00049389	-2.3209	-0.0013341	-3.1801	-0.0018279	574.8012485504619	132.88	1.129	131.76	131.49	132.61	-1.1249					47	22	3	0	0	0	0.22663	1	10643	10643		90.37	10.657	1	129910			46584	8082	38604	38626	50043	50043	80				0.022817335631543756
QQCNRVRR	8	Unmodified	_QQCNRVRR_					0	0	0			REV__ENST00000435706.6_2_3:25686902-25705726:-|nuORF	REV__ENST00000435706.6_2_3:25686902-25705726:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	530.2796020507812	2	530.283066	1058.55158	0.037857	2.0075E-05	-3.4979	-0.0018549	-3.4601	-0.0018348	530.2810981489993	31.633	0.39686	31.633	31.361	31.757	0					10	7	2	0	0	0	0.7043	1	1322	1322		42.474	1.6963	1	124390	+		46585	25772	38605	38627	50044	50044					0.02464490842817213
QQCNRVRR	8	Unmodified	_QQCNRVRR_					0	0	0			REV__ENST00000435706.6_2_3:25686902-25705726:-|nuORF	REV__ENST00000435706.6_2_3:25686902-25705726:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	530.283066	1058.55158	0.037857	2.0075E-05	-3.4979	-0.0018549	-3.4601	-0.0018348	530.2810981489993	31.633	0.39686	31.633	31.361	31.757	0	0	0	NaN	42.474	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124390	+		46586	25772	38605	38627							0.02464490842817213
QQDLKARKL	9	Unmodified	_QQDLKARKL_					0	0	0			REV__ENSG00000115942|ENST00000234296|ORC2	REV__ENSG00000115942|ENST00000234296|ORC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.3638916015625	2	550.332747	1098.65094	0.15768	8.6776E-05	-0.68067	-0.0003746	-0.52299	-0.00028782	550.3320442692299	60.637	0.79705	57.207	56.947	57.744	-3.43					30	15	3	0	0	0	0.027026	1	4162	4162		107.01	24.767	1	73437	+		46587	18279	38606	38628	50045	50045					0.10556212008555121
QQDLKARKL	9	Unmodified	_QQDLKARKL_					0	0	0			REV__ENSG00000115942|ENST00000234296|ORC2	REV__ENSG00000115942|ENST00000234296|ORC2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	550.332747	1098.65094	-0.032019	-1.7621E-05	-0.527	-0.00029003	-0.55902	-0.00030765	550.3323702141209	59.913	0.98634	57.142	56.567	57.553	-2.7702	-0.03247	5.0557E-05	NaN	107.01	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44362	+		46588	18279	38606	38628							0.10556212008555121
QQDRIQQEI	9	Unmodified	_QQDRIQQEI_					0	0	0		ENST00000536443.1_1_11:63753967-63757776:+|nuORF;ENST00000301453.7_1_11:63753886-63764121:+|nuORF;ENSG00000167770|ENST00000538426|OTUB1	ENST00000536443.1_1_11:63753967-63757776:+|nuORF	ENST00000536443.1_1_11:63753967-63757776:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	579.3004150390625	2	579.299101	1156.58365	-0.084579	-4.8997E-05	0.047215	2.7352E-05	-0.037364	-2.1645E-05	579.2990299231865	57.933	0.54807	57.933	57.732	58.28	0					29	12	3	0	0	0	0.03923	1	4898	4898		127.46	1.6477	1	1563700			46589	6839	38607	38629	50046	50046					0.011621370069633485
QQEDAGKE	8	Unmodified	_QQEDAGKE_					0	0	0		ENSG00000132821|ENST00000373461|VSTM2L	ENSG00000132821|ENST00000373461|VSTM2L	ENSG00000132821|ENST00000373461|VSTM2L	MULTI-MSMS	OvCa9_classI_Rep2	2	452.7033996582031	2	452.703971	903.393389	2.243	0.0010154	-1.5205	-0.00068832	0.72258	0.00032711	452.70324167027087	31.032	1.5294	28.322	28.15	29.679	-2.7097					67	30	4	0	0	0	0.66704	1	967	967		50.025	11.218	1	376420			46590	4176	38608	38630	50047	50047					-0.06217149655276444
QQEKEDAKRI	10	Unmodified	_QQEKEDAKRI_					0	0	0		ENSG00000134899|ENST00000652225|ERCC5;nc|ENSG00000134899|P28715-2|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.5906677246094	3	415.557964	1243.65206	0.78799	0.00032746	3.0635	0.0012731	3.8515	0.0016005	415.55920981863375	32.486	1.5751	29.79	29.569	31.144	-2.6954					49	33	2	0	0	0	0.027021	1	782	782		49.536	22.489	1	34733			46591	4343	38609	38631	50048	50048					0.039983815868026795
QQELITQYS	9	Unmodified	_QQELITQYS_					0	0	0			REV__ENST00000480117.1_1_3:160600062-160753635:+|nuORF	REV__ENST00000480117.1_1_3:160600062-160753635:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.7997436523438	2	555.277303	1108.54005	0.39051	0.00021684	-1.1975	-0.00066494	-0.80699	-0.0004481	555.2768829005108	61.772	1.5356	58.314	58.01	59.546	-3.4577					37	29	2	0	0	0	0.027433	1	4366	4366		64.207	12.872	1	200770	+		46592	20856	38610	38632	50049	50049					-0.009874724901919762
QQELLLNE	8	Unmodified	_QQELLLNE_					0	0	0			REV__ENST00000354752.5_1_9:99942307-99949763:-|nuORF	REV__ENST00000354752.5_1_9:99942307-99949763:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.76287841796875	2	493.761289	985.508025	-0.87273	-0.00043092	2.205	0.0010887	1.3323	0.00065782	493.76219140496244	45.193	1.4604	42.155	41.867	43.328	-3.0385					67	27	3	0	0	0	0.67872	1	2297	2297		47.657	0	1	300830	+		46593	24740	38611	38633	50050	50050					0.014691598266836081
QQELLLNE	8	Unmodified	_QQELLLNE_					0	0	0			REV__ENST00000354752.5_1_9:99942307-99949763:-|nuORF	REV__ENST00000354752.5_1_9:99942307-99949763:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	493.761289	985.508025	0.43499	0.00021478	0.39736	0.0001962	0.83235	0.00041098	493.76129402319054	45.082	1.3988	42.373	41.802	43.2	-2.7097	0.10905	-0.0010519	NaN	47.657	44	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87860	+		46594	24740	38611	38633							0.014691598266836081
QQELLLNE	8	Unmodified	_QQELLLNE_					0	0	0			REV__ENST00000354752.5_1_9:99942307-99949763:-|nuORF	REV__ENST00000354752.5_1_9:99942307-99949763:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	493.761289	985.508025	-0.87273	-0.00043092	2.205	0.0010887	1.3323	0.00065782	493.76219140496244	45.193	1.4604	42.155	41.867	43.328	-3.0385	-0.10905	0.0007332	NaN	47.657	67	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	300830	+		46595	24740	38611	38633							0.014691598266836081
QQELSASGHS	10	Unmodified	_QQELSASGHS_					0	0	0		ENST00000219313.8_1_16:74339692-74339791:+|nuORF	ENST00000219313.8_1_16:74339692-74339791:+|nuORF	ENST00000219313.8_1_16:74339692-74339791:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.2702026367188	2	522.241252	1042.46795	2.0925	0.0010928	1.5474	0.00080812	3.6399	0.0019009	522.2420422990914	75.567	0.86891	75.567	75.33	76.199	0					33	21	2	0	0	0	0.02676	1	7528	7528		33.922	1.1092	1	664110			46596	9683	38612	38634	50051	50051					-0.05158386843891094
QQEPVRRA	8	Unmodified	_QQEPVRRA_					0	0	0			REV__NINL|p.R1202Efs*7|1|0.18|ENSG00000101004|chr20:25461615-25461615|A/-|frameshift_variant	REV__NINL|p.R1202Efs*7|1|0.18|ENSG00000101004|chr20:25461615-25461615|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.27288818359375	2	492.27269	982.530826	0.60486	0.00029776	-1.461	-0.00071919	-0.8561	-0.00042143	492.2720128221692	38.355	2.6605	35.428	35.156	37.817	-2.9264					142	52	5	0	0	0	0.66057	1	1558	1558		51.335	3.4199	1	4917900	+		46597	17466	38613	38635	50052	50052					0.038862237347984774
QQETVLKLK	9	Unmodified	_QQETVLKLK_					0	0	0			REV__ENSG00000167548|ENST00000301067|KMT2D	REV__ENSG00000167548|ENST00000301067|KMT2D	MSMS	OvCa99_classI_Rep5	1	543.8291015625	2	543.829506	1085.64446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.126	1	33.126	32.626	33.626	0								0	0	0	0.021009	1	1498	1498		131.03	3.5697	1		+		46598	21287	38614	38636	50053	50053					0.10506274057161136
QQEVRPAR	8	Unmodified	_QQEVRPAR_					0	0	0			REV__ENST00000497675.2_1_1:2125076-2125544:-|nuORF	REV__ENST00000497675.2_1_1:2125076-2125544:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	492.2722473144531	2	492.27269	982.530826	-0.79248	-0.00039012	0.3379	0.00016634	-0.45458	-0.00022378	492.27281781556945	38.402	2.3795	35.692	35.32	37.7	-2.7097					117	47	5	0	0	0	0.71369	2	1841	1841;1861		40.573	1.3198	1	1550300	+		46599	20748	38615	38637	50054;50055	50054					0.038862237347984774
QQFPVPMW	8	Unmodified	_QQFPVPMW_					0	0	0		ENST00000357137.8_1_22:41253121-41277981:+|nuORF	ENST00000357137.8_1_22:41253121-41277981:+|nuORF	ENST00000357137.8_1_22:41253121-41277981:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.3032836914062	2	516.752213	1031.48987	-0.60565	-0.00031297	-1.1822	-0.00061089	-1.7878	-0.00092386	516.7530290189401	63.373	0.81659	59.898	59.625	60.442	-3.475					23	16	2	0	0	0	0.028476	1	4426	4426		28.254	0	1	58931			46600	10713	38616	38638	50056	50056					-0.024612536290305798
QQFSKQST	8	Unmodified	_QQFSKQST_					0	0	0			REV__nc|ENSG00000147526|O75410-7|TACC1	REV__nc|ENSG00000147526|O75410-7|TACC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	476.2906494140625	2	477.237981	952.461409	-0.016503	-7.8761E-06	4.3368	0.0020697	4.3203	0.0020618	477.23990808718656	58.592	0.52946	58.592	58.363	58.892	0					36	12	4	0	0	0	0.028476	1	4970	4970		24.203	0	1	2813800	+		46601	20070	38617	38639	50057	50057					-0.016722800046068187
QQFTCFTGEID	11	Unmodified	_QQFTCFTGEID_					0	0	0		LRP6|p.E1501Nfs*47|1|0.14|ENSG00000070018|chr12:12124611-12124611|C/-|frameshift_variant;ENSG00000070018|ENST00000261349|LRP6;ENST00000540415.1_1_12:12283717-12288148:-|nuORF	LRP6|p.E1501Nfs*47|1|0.14|ENSG00000070018|chr12:12124611-12124611|C/-|frameshift_variant	LRP6|p.E1501Nfs*47|1|0.14|ENSG00000070018|chr12:12124611-12124611|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	644.7804565429688	2	644.779353	1287.54415	4.3816	0.0028252	-2.2348	-0.0014409	2.1469	0.0013843	644.7777853790187	131.52	1.7661	130.02	129.67	131.44	-1.5015					73	35	4	0	0	0	0.72491	1	12634	12634		16.717	0.24424	1	87173			46602	1415	38618	38640	50058	50058					-0.08811751058783557
QQGKKGILSK	10	Unmodified	_QQGKKGILSK_					0	0	0			REV__nc|ENSG00000105968|Q71UI9-3|H2AZ2	REV__nc|ENSG00000105968|Q71UI9-3|H2AZ2	MSMS	OvCa9_classI_Rep2	2	543.8343505859375	2	543.835123	1085.65569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.433	1	27.723	27.223	28.223	-2.7097								0	0	0	0.11394	1	829	829		63.534	3.4156	1		+		46603	17769	38619	38641	50059	50059					0.11629096151318663
QQGPFTIKKI	10	Unmodified	_QQGPFTIKKI_					0	0	0			REV__ENST00000330333.10_1_21:42647577-42647706:+|nuORF	REV__ENST00000330333.10_1_21:42647577-42647706:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	580.3433227539062	2	580.345323	1158.67609	-0.61681	-0.00035796	-1.7843	-0.0010355	-2.4011	-0.0013934	580.3440887111482	29.925	0.49981	29.925	29.785	30.285	0					19	9	3	0	0	0	0.74374	1	1112	1112		25.574	1.0549	1	96054	+		46604	24525	38620	38642	50060	50060					0.10310266811143265
QQGQGWPM	8	Unmodified	_QQGQGWPM_					0	0	0			REV__tr|A0A553SMH2|A0A553SMH2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_22435PE=4SV=1	REV__tr|A0A553SMH2|A0A553SMH2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_22435PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	465.26531982421875	2	466.20817	930.401786	-0.58859	-0.00027441	1.7434	0.0008128	1.1548	0.00053839	466.2087064222505	95.229	0.65024	93.333	93.063	93.713	-1.8956					21	12	3	0	0	0	0.028476	1	6204	6204		20.482	0	1	23939	+		46605	30329	38621	38643	50061	50061					-0.06619874219643407
QQGTTKLSV	9	Unmodified	_QQGTTKLSV_					0	0	0		nc|ENSG00000163069|Q16585-2|SGCB;ENSG00000163069|ENST00000381431|SGCB	nc|ENSG00000163069|Q16585-2|SGCB	nc|ENSG00000163069|Q16585-2|SGCB	MULTI-MSMS	OvCa99_classI_Rep5	1	481.27056884765625	2	481.269281	960.52401	-0.74028	-0.00035627	0.44831	0.00021576	-0.29197	-0.00014052	481.2694850107459	49.592	0.87155	49.592	49.33	50.201	0					50	19	4	0	0	0	0.075543	1	3708	3708		104.06	16.302	1	4217900			46606	6262	38622	38644	50062	50062					0.042168660635638844
QQHFQIPV	8	Unmodified	_QQHFQIPV_					0	0	0			REV__nc|ENSG00000214447|A6NFU0|FAM187A	REV__nc|ENSG00000214447|A6NFU0|FAM187A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.30517578125	2	498.766709	995.518865	-1.2997	-0.00064826	-3.1493	-0.0015708	-4.449	-0.002219	498.7650689011301	43.493	0.63	40.486	40.063	40.693	-3.0074					18	11	2	0	0	0	0.028476	1	2092	2092		20.482	0	1	22452	+		46607	29129	38623	38645	50063	50063					0.020926069916185952
QQHVIETLI	9	Unmodified	_QQHVIETLI_					0	0	0		nc|ENSG00000150753|P48643-2|CCT5;ENSG00000150753|ENST00000280326|CCT5	nc|ENSG00000150753|P48643-2|CCT5	nc|ENSG00000150753|P48643-2|CCT5	MULTI-MSMS	OvCa99_classI_Rep5	1	540.8092651367188	2	540.806031	1079.59751	1.861	0.0010064	0.13337	7.2129E-05	1.9943	0.0010786	540.8059878136505	93.072	0.50162	93.072	92.803	93.305	0					29	11	3	0	0	0	0.027416	1	10074	10074		138.24	0	1	2976100			46608	5516	38624	38646	50064	50064					0.06089414506072899
QQILQFYF	8	Unmodified	_QQILQFYF_					0	0	0		tr|A0A553SJV2|A0A553SJV2_NIACISpoIID/LytBdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_17600PE=4SV=1	tr|A0A553SJV2|A0A553SJV2_NIACISpoIID/LytBdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_17600PE=4SV=1	tr|A0A553SJV2|A0A553SJV2_NIACISpoIID/LytBdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_17600PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	543.2928466796875	2	543.784567	1085.55458	-0.9145	-0.00049729	-2.4524	-0.0013336	-3.3669	-0.0018309	544.2846768386142	82.457	1.1906	80.161	79.938	81.129	-2.2963					36	23	2	0	0	0	0.028476	1	4629	4629		26.796	0	1	200680			46609	33544	38625	38647	50065	50065					0.01522644448596111
QQIQKTFVE	9	Unmodified	_QQIQKTFVE_					0	0	0			REV__nc|ENSG00000128596|Q96JN2-2|CCDC136	REV__nc|ENSG00000128596|Q96JN2-2|CCDC136	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.767578125	2	560.803488	1119.59242	0.060395	3.387E-05	-0.28887	-0.000162	-0.22848	-0.00012813	560.8031320767187	61.709	0.49365	61.709	61.501	61.994	0					18	11	2	0	0	0	0.027462	1	5429	5429		31.53	4.8369	1	716910	+		46610	18863	38626	38648	50066	50066					0.03741110643431966
QQKAENELK	9	Unmodified	_QQKAENELK_					0	0	0		nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8291015625	2	544.290745	1086.56694	-0.21501	-0.00011703	-1.6588	-0.00090289	-1.8738	-0.0010199	544.29088005171	33.226	0.83617	33.226	32.892	33.728	0					45	16	5	0	0	0	0.027108	1	1498	1498		115.49	11.437	1	344960			46611	4218	38627	38649	50067	50067					0.027116361209891693
QQKKQVRT	8	Unmodified	_QQKKQVRT_					0	0	0		chr7:74716950-74718903|101|13.53|0.27|5.62|+|0|GTF2I,None|1	chr7:74716950-74718903|101|13.53|0.27|5.62|+|0|GTF2I,None|1	chr7:74716950-74718903|101|13.53|0.27|5.62|+|0|GTF2I,None|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7538146972656	2	508.30399	1014.59343	-0.80265	-0.00040799	4.2061	0.002138	3.4034	0.00173	508.305983300413	26.584	0.49912	26.584	26.342	26.841	0					11	9	2	0	0	0	0.028476	1	689	689		23.042	6.3251	1	26799			46612	532	38628	38650	50068	50068					0.08671369803005291
QQKLALLEQQ	10	Unmodified	_QQKLALLEQQ_					0	0	0			REV__nc|ENSG00000108840|Q9UQL6-2|HDAC5	REV__nc|ENSG00000108840|Q9UQL6-2|HDAC5	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.9043884277344	3	400.231189	1197.67174	0.7567	0.00030286	-2.8728	-0.0011498	-2.116	-0.00084691	400.2301726095949	53.608	0.64322	53.608	53.131	53.774	0					19	14	3	0	0	0	0.02663	1	4206	4206		52.167	0	1	170930	+		46613	17907	38629	38651	50069	50069					0.08080757597554111
QQKLWLQQ	8	Unmodified	_QQKLWLQQ_					0	0	0		ENST00000521429.5_1_8:86114393-86119660:+|nuORF;E2F5|p.P273Sfs*3|1|0.11|ENSG00000133740|chr8:85209341-85209342|-/TTCA|frameshift_variant;TBC1D15-E2F5|2|fusion;TBC1D15-E2F5|1|fusion;E2F5|p.P273Nfs*36|1|0.11|ENSG00000133740|chr8:85209342-85209343|-/AATTC|frameshift_variant;nc|ENSG00000133740|Q15329-2|E2F5;ENSG00000133740|ENST00000416274|E2F5	ENST00000521429.5_1_8:86114393-86119660:+|nuORF	ENST00000521429.5_1_8:86114393-86119660:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3014526367188	2	536.300916	1070.58728	0.51775	0.00027767	3.8279	0.0020529	4.3456	0.0023306	536.3013075460038	45.688	0.61568	45.688	45.582	46.198	0					17	13	2	0	0	0	0.028476	1	3238	3238		88.643	8.9303	1	385880			46614	772	38630	38652	50070	50070					0.05480851571473977
QQKQKYWDRFR	11	Unmodified	_QQKQKYWDRFR_					0	0	0			REV__tr|A0A553SM57|A0A553SM57_NIACILactateutilizationproteinBOS=NialliacirculansOX=1397GN=lutBPE=3SV=1	REV__tr|A0A553SM57|A0A553SM57_NIACILactateutilizationproteinBOS=NialliacirculansOX=1397GN=lutBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3155517578125	3	528.279424	1581.81644	-1.2241	-0.00064666	1.0779	0.00056945	-0.14616	-7.7211E-05	528.2810743861635	70.025	0.73299	70.025	69.513	70.246	0					25	17	3	0	0	0	0.026232	1	6618	6618		21.032	3.1991	1	325050	+		46615	30298	38631	38653	50071	50071					0.04880818797369102
QQKRLAAVN	9	Unmodified	_QQKRLAAVN_					0	0	0			REV__STAB2|p.G2507R|1|0.04|ENSG00000136011|chr12:103763522-103763522|G/C|missense_variant	REV__STAB2|p.G2507R|1|0.04|ENSG00000136011|chr12:103763522-103763522|G/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.82470703125	2	514.30399	1026.59343	-0.043409	-2.2325E-05	3.7607	0.0019342	3.7173	0.0019118	514.3056133641306	78.375	0.65417	76.023	75.546	76.2	-2.3527					17	12	2	0	0	0	0.027417	1	4107	4107		37.159	9.2769	1	42316	+		46616	29460	38632	38654	50072	50072					0.0811936980298924
QQKRLAAVN	9	Unmodified	_QQKRLAAVN_					0	0	0			REV__STAB2|p.G2507R|1|0.04|ENSG00000136011|chr12:103763522-103763522|G/C|missense_variant	REV__STAB2|p.G2507R|1|0.04|ENSG00000136011|chr12:103763522-103763522|G/C|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.30399	1026.59343	-0.082599	-4.2481E-05	3.9148	0.0020134	3.8322	0.0019709	514.8078609052728	78.015	0.9919	76.225	75.623	76.614	-1.7894	0.027246	-0.00013426	NaN	37.159	22	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22353	+		46617	29460	38632	38654							0.0811936980298924
QQLENIHLRQ	10	Unmodified	_QQLENIHLRQ_					0	0	0		ENSG00000145781|ENST00000274458|COMMD10	ENSG00000145781|ENST00000274458|COMMD10	ENSG00000145781|ENST00000274458|COMMD10	MULTI-MSMS	OvCa9_classI_Rep3	3	640.34619140625	2	639.849293	1277.68403	-6.8962	-0.0044125	-1.4097	-0.00090198	-8.3059	-0.0053145	640.350123247804	163.09	0.66034	161.7	161.44	162.1	-1.3925					63	14	6	0	0	0	0.66721	1	14206	14206		34.173	0.25091	1	150650			46618	5244	38633	38655	50073	50073					0.05629794060610038
QQLEPKKST	9	Unmodified	_QQLEPKKST_					0	0	0		nc|ENSG00000112305|Q8IYB5-3|SMAP1;nc|ENSG00000112305|Q8IYB5-2|SMAP1;ENSG00000112305|ENST00000370455|SMAP1	nc|ENSG00000112305|Q8IYB5-3|SMAP1	nc|ENSG00000112305|Q8IYB5-3|SMAP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.8119506835938	2	529.795663	1057.57677	-0.28617	-0.00015161	-0.84678	-0.00044862	-1.133	-0.00060023	529.7961594886546	70.966	0.81786	68.396	67.765	68.583	-2.5707					39	15	4	0	0	0	0.027462	1	5700	5700		45.952	22.909	1	54802			46619	2896	38634	38656	50074	50074					0.05028824126384279
QQLEPKKST	9	Unmodified	_QQLEPKKST_					0	0	0		nc|ENSG00000112305|Q8IYB5-3|SMAP1;nc|ENSG00000112305|Q8IYB5-2|SMAP1;ENSG00000112305|ENST00000370455|SMAP1	nc|ENSG00000112305|Q8IYB5-3|SMAP1	nc|ENSG00000112305|Q8IYB5-3|SMAP1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	529.795663	1057.57677	0.3159	0.00016736	-5.8067	-0.0030764	-5.4908	-0.002909	529.7923629707503	71.07	0.30357	68.35	68.163	68.466	-2.7196	-0.022863	-0.00373	NaN	37.159	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5738.5			46620	2896	38634	38656							0.05028824126384279
QQLFFFFL	8	Unmodified	_QQLFFFFL_					0	0	0		ENST00000261254.7_1_12:4410574-4410667:+|nuORF	ENST00000261254.7_1_12:4410574-4410667:+|nuORF	ENST00000261254.7_1_12:4410574-4410667:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.8292236328125	2	545.292028	1088.5695	-0.20419	-0.00011134	0.54772	0.00029866	0.34353	0.00018732	545.2922521432381	98.125	1.3212	95.746	95.317	96.638	-2.3786					43	25	2	0	0	0	0.028476	1	8730	8730		65.897	8.4448	1	46102			46621	9860	38635	38657	50075	50075					0.028761363166267984
QQLFFFLF	8	Unmodified	_QQLFFFLF_					0	0	0		ENST00000571658.2_2_17:45008316-45008574:+|nuORF	ENST00000571658.2_2_17:45008316-45008574:+|nuORF	ENST00000571658.2_2_17:45008316-45008574:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	545.8282470703125	2	545.292028	1088.5695	0.020424	1.1137E-05	-0.027751	-1.5132E-05	-0.0073269	-3.9953E-06	545.2917224260501	96.673	1.3802	95.715	95.182	96.562	-0.95857					44	27	2	0	0	0	0.028476	1	8679	8679		46.766	0	1	37605			46622	13902	38636	38658	50076	50076					0.02876136316604061
QQLFPVEL	8	Unmodified	_QQLFPVEL_					0	0	0			REV__ENST00000429139.1_1_9:127420791-127420986:+|nuORF	REV__ENST00000429139.1_1_9:127420791-127420986:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.2912902832031	2	487.271293	972.528032	-0.25292	-0.00012324	-2.0246	-0.00098652	-2.2775	-0.0011098	487.26976996086887	46.71	0.79305	44.001	43.894	44.687	-2.7097					20	15	2	0	0	0	0.028476	1	2795	2795		18.324	0	1	24126	+		46623	25698	38637	38659	50077	50077					0.04066955557277652
QQLGKVVQV	9	Unmodified	_QQLGKVVQV_					0	0	0		ENST00000495104.1_1_4:165841962-165842070:-|nuORF	ENST00000495104.1_1_4:165841962-165842070:-|nuORF	ENST00000495104.1_1_4:165841962-165842070:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	499.8057556152344	2	499.803291	997.59203	-0.72832	-0.00036402	0.32432	0.00016209	-0.404	-0.00020192	499.8033605848643	68.06	0.59555	68.06	67.803	68.398	0					32	14	3	0	0	0	0.46377	1	6410	6410		45.952	0	1	2595700			46624	12770	38638	38660	50078	50078					0.09313735714238192
QQLGLKQQI	9	Unmodified	_QQLGLKQQI_					0	0	0		ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	ENSG00000111652|ENST00000543155|COPS7A	MULTI-MSMS	OvCa99_classI_Rep5	1	528.315673828125	2	528.314023	1054.61349	-0.36453	-0.00019259	1.2035	0.00063583	0.83897	0.00044324	528.3146420306605	69.411	1.7807	69.411	69.019	70.8	0					71	43	2	0	0	0	0.16524	1	6587	6587		82.305	18.999	1	12833000			46625	2837	38639	38661	50079	50079					0.08837120742941806
QQLGQLSQL	9	Unmodified	_QQLGQLSQL_					0	0	0			REV__ENST00000358094.7_1_X:56295423-56310924:+|nuORF	REV__ENST00000358094.7_1_X:56295423-56310924:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	507.78448486328125	2	507.782556	1013.55056	2.7697	0.0014064	-1.0172	-0.00051651	1.7526	0.00088992	507.78248367182016	87.89	0.58392	87.89	87.671	88.255	0					23	13	3	0	0	0	0.2077	1	9326	9326		75.043	14.925	1	548600	+		46626	17550	38640	38662	50080	50080					0.04432554954905754
QQLGRRRRGR	10	Unmodified	_QQLGRRRRGR_					0	0	0			REV__ENST00000308330.2_1_12:65564134-65564248:+|nuORF	REV__ENST00000308330.2_1_12:65564134-65564248:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8820190429688	2	641.88741	1281.76027	-3.6311	-0.0023307	-3.8618	-0.0024788	-7.4928	-0.0048095	641.8847801872174	153.39	4.0845	151.94	150.68	154.77	-1.4516					420	106	6	0	0	0	0.82648	1	15076	15076		15.642	0	1	809780	+		46627	24315	38641	38663	50081	50081					0.13065655471245918
QQLIDDHFL	9	Unmodified	_QQLIDDHFL_					0	0	0		ENSG00000237289|ENST00000441322|CKMT1B;ENSG00000223572|ENST00000413453|CKMT1A;nc|ENSG00000237289|P12532-2|CKMT1A;ENSG00000104879|ENST00000221476|CKM;ENSG00000166165|ENST00000348956|CKB	ENSG00000237289|ENST00000441322|CKMT1B;ENSG00000166165|ENST00000348956|CKB	ENSG00000166165|ENST00000348956|CKB	MULTI-MSMS	OvCa9_classI_Rep3	3	564.7898559570312	2	564.787838	1127.56112	2.0131	0.001137	0.71707	0.00040499	2.7302	0.001542	564.7881890961606	52.015	1.7437	48.761	47.755	49.499	-3.2542					100	67	2	0	0	0	0.7044	1	1218	1218		16.473	0	1	21266			46628	9250;6645	38642	38664	50082	50082					0.0024453760931919533
QQLKQEPIR	9	Unmodified	_QQLKQEPIR_					0	0	0		ENST00000407916.2_1_7:55002243-55002453:+|nuORF	ENST00000407916.2_1_7:55002243-55002453:+|nuORF	ENST00000407916.2_1_7:55002243-55002453:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	570.3331909179688	2	570.330205	1138.64586	0.19995	0.00011404	2.5841	0.0014738	2.784	0.0015878	570.3316611476074	72.743	1.1857	72.743	72.492	73.678	0					102	29	4	0	0	0	0.11471	2	7114	7084;7114		93.195	18.033	1	52662000			46629	11503	38643	38665	50083;50084	50084					0.08207908145936926
QQLKYAVQI	9	Unmodified	_QQLKYAVQI_					0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	OvCa99_classI_Rep5	1	545.8170776367188	2	545.816399	1089.61824	2.6064	0.0014226	-0.35427	-0.00019336	2.2521	0.0012293	545.8161549560383	86.536	0.90362	86.536	86.231	87.135	0					62	21	5	0	0	0	0.16524	1	9118	9118		82.305	10.428	1	13666000			46630	6182	38644	38666	50085	50085					0.07702004885709357
QQLLNPMAAII	11	Unmodified	_QQLLNPMAAII_					0	0	0			REV__nc|ENSG00000185591|P08047-3|SP1	REV__nc|ENSG00000185591|P08047-3|SP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.68560791015625	3	404.565403	1210.67438	1.1425	0.0004622	-2.5147	-0.0010174	-1.3723	-0.00055517	404.56435073419436	71.273	0.43436	71.273	70.954	71.389	0					16	10	2	0	0	0	0.026079	1	6859	6859		25.126	0.89417	1	169160	+		46631	22514	38645	38667	50086	50086					0.07746889730879047
QQLLVGENN	9	Unmodified	_QQLLVGENN_					0	0	0		ENSG00000205108|ENST00000378788|FAM205A	ENSG00000205108|ENST00000378788|FAM205A	ENSG00000205108|ENST00000378788|FAM205A	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7654724121094	2	507.764363	1013.51417	3.7041	0.0018808	0.31932	0.00016214	4.0235	0.002043	507.76435878537296	132.17	1.6916	130.67	129.94	131.63	-1.5015					93	33	4	0	0	0	0.59259	1	12744	12744		32.812	4.5581	1	152800			46632	9051	38646	38668	50087	50087					0.007956780581935163
QQLMVPVI	8	Unmodified	_QQLMVPVI_					0	0	0			REV__ENST00000356467.4_1_11:73131032-73141791:-|nuORF	REV__ENST00000356467.4_1_11:73131032-73141791:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	465.26531982421875	2	464.270238	926.525924	-0.73688	-0.00034211	-1.6675	-0.00077415	-2.4043	-0.0011163	464.2697745875559	95.436	0.40295	93.54	93.261	93.664	-1.8956					13	7	2	0	0	0	0.028476	1	6204	6204		54.765	7.9982	1	55165	+		46633	24763	38647	38669	50088	50088					0.05972203547821664
QQLPAKLDT	9	Unmodified	_QQLPAKLDT_					0	0	0			REV__ENST00000477409.1_1_2:97001567-97024936:+|nuORF	REV__ENST00000477409.1_1_2:97001567-97024936:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.2832946777344	2	507.284931	1012.55531	0.0066851	3.3913E-06	-2.7534	-0.0013968	-2.7467	-0.0013934	507.283412188162	31.081	1.5294	28.371	28.15	29.679	-2.7097					66	30	3	0	0	0	0.60342	1	915	915		31.53	3.6476	1	500220	+		46634	16010	38648	38670	50089	50089					0.04953439097653245
QQLPDILKI	9	Unmodified	_QQLPDILKI_					0	0	0		nc|ENSG00000136811|Q5BJF6-7|ODF2;ENSG00000136811|ENST00000351030|ODF2;nc|ENSG00000136811|Q5BJF6-9|ODF2;nc|ENSG00000136811|Q5BJF6-8|ODF2;nc|ENSG00000136811|Q5BJF6-5|ODF2;nc|ENSG00000136811|Q5BJF6-6|ODF2;nc|ENSG00000136811|Q5BJF6-10|ODF2;chr9:128455228-128459567|407|24.4|0.79|4.94|+|ENST00000393533|ODF2,ODF2;nc|ENSG00000136811|Q5BJF6-2|ODF2;nc|ENSG00000136811|Q5BJF6-3|ODF2;nc|ENSG00000136811|Q5BJF6-4|ODF2;nc|ENSG00000136811|Q5BJF6|ODF2	nc|ENSG00000136811|Q5BJF6-7|ODF2	nc|ENSG00000136811|Q5BJF6-7|ODF2	MULTI-MSMS	OvCa99_classI_Rep5	1	534.3286743164062	2	534.326599	1066.63865	2.1994	0.0011752	0.54446	0.00029092	2.7439	0.0014661	534.3268030908573	120.55	0.52602	120.55	120.3	120.83	0					22	12	2	0	0	0	0.14998	2	13845	13845;13867		84.916	2.675	1	943160			46635	4516	38649	38671	50090;50091	50090					0.10799175545503203
QQLPETIGSL	10	Unmodified	_QQLPETIGSL_					0	0	0		nc|ENSG00000112851|Q96RT1-7|ERBIN;nc|ENSG00000112851|Q96RT1-6|ERBIN;nc|ENSG00000112851|Q96RT1-4|ERBIN;nc|ENSG00000112851|Q96RT1-5|ERBIN;nc|ENSG00000112851|Q96RT1-3|ERBIN;nc|ENSG00000112851|Q96RT1-9|ERBIN;nc|ENSG00000112851|Q96RT1-2|ERBIN;ENSG00000112851|ENST00000284037|ERBIN;nc|ENSG00000112851|Q96RT1-8|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	nc|ENSG00000112851|Q96RT1-7|ERBIN	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.2959594726562	2	543.295496	1084.57644	-1.9696	-0.00107	2.4705	0.0013422	0.50094	0.00027216	543.2967504586788	118.95	1.1437	117.6	117.15	118.3	-1.3444					45	21	3	0	0	0	0.55359	1	11176	11176		47.657	0	1	121020			46636	2931	38650	38672	50092	50092					0.03753404406529626
QQLPVKSLPP	10	Unmodified	_QQLPVKSLPP_					0	0	0			REV__ENST00000470902.5_1_9:130911720-130912803:+|nuORF	REV__ENST00000470902.5_1_9:130911720-130912803:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8295288085938	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.67931	1	14222	14222		32.812	2.3088	1	245610	+		46637	20105	38651	38673	50093	50093					0.10094577919812764
QQLQKVQI	8	Unmodified	_QQLQKVQI_					0	0	0		HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|86|2|sense	HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|86|2|sense	HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|86|2|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	492.794677734375	2	492.795466	983.57638	0.0010957	5.3995E-07	-0.27902	-0.0001375	-0.27792	-0.00013696	492.7951844252828	74.404	1.8233	72.433	71.798	73.622	-1.9711					121	34	5	0	0	0	0.61758	1	6109	6109		60.294	0	1	331000			46638	14458	38652	38674	50094	50094					0.08393449197183145
QQLQSLQQR	9	Unmodified	_QQLQSLQQR_					0	0	0			REV__EPC2|p.A599S|1|0.49|ENSG00000135999|chr2:148781718-148781718|G/T|missense_variant	REV__EPC2|p.A599S|1|0.49|ENSG00000135999|chr2:148781718-148781718|G/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	564.8104858398438	2	564.809636	1127.60472	-2.1858	-0.0012346	3.688	0.002083	1.5023	0.00084849	564.8115908604212	146.02	1.2908	145.8	145.33	146.62	-0.22697					59	25	3	0	0	0	0.69123	1	14711	14711		20.947	0	1	117310	+		46639	28109	38653	38675	50095	50095					0.04602147106470511
QQLRAEPE	8	Unmodified	_QQLRAEPE_					0	0	0			REV__ENST00000310340.9_1_4:493020-493164:+|nuORF	REV__ENST00000310340.9_1_4:493020-493164:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.2590637207031	2	485.751256	969.487959	-0.86567	-0.0004205	0.47765	0.00023202	-0.38802	-0.00018848	485.7516021503043	42.038	0.34616	42.038	41.853	42.199	0					10	7	2	0	0	0	0.028476	1	2665	2665		63.306	0	1	83358	+		46640	24339	38654	38676	50096	50096					0.0019940888670362256
QQLRRQELER	10	Unmodified	_QQLRRQELER_					0	0	0		ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	MULTI-SECPEP	OvCa9_classI_Rep3	3	452.9329833984375	3	452.588258	1354.74294	1.2437	0.0005629	-1.255	-0.00056799	-0.011241	-5.0874E-06	452.58765675078513	65.657	0.55808	62.711	62.503	63.061	-2.9459					15	10	2	0	0	0	0.027446	1	2619	2619		15.333	0.63944	1	18720			46641	6013	38655	38677	50097	50097					0.07976270354924964
QQLRRQELER	10	Unmodified	_QQLRRQELER_					0	0	0		ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	ENSG00000159450|ENST00000614923|TCHH	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	452.588258	1354.74294	-0.41061	-0.00018584	0.95096	0.0004304	0.54035	0.00024456	452.5882399416087	66.154	0.38621	62.663	62.418	62.805	-3.4902	-0.023825	0.002655	NaN	20.03	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14844			46642	6013	38655	38677							0.07976270354924964
QQLYPIRI	8	Unmodified	_QQLYPIRI_					0	0	0			REV__nc|ENSG00000166435|Q6P2D8-2|XRRA1	REV__nc|ENSG00000166435|Q6P2D8-2|XRRA1	MULTI-MSMS	OvCa9_classI_Rep2	2	515.80517578125	2	515.805834	1029.59712	-0.17166	-8.8541E-05	0.15324	7.904E-05	-0.018421	-9.5016E-06	515.8057522410776	136.15	1.0273	135.92	135.57	136.6	-0.22696					51	20	4	0	0	0	0.73938	1	13523	13523		31.955	1.4512	1	147900	+		46643	21192	38656	38678	50098	50098					0.08350039576839663
QQMDLARQQ	9	Unmodified	_QQMDLARQQ_					0	0	0		nc|ENSG00000110693|P35712-3|SOX6;ENSG00000110693|ENST00000683767|SOX6;nc|ENSG00000110693|P35712-4|SOX6;nc|ENSG00000110693|P35712-2|SOX6	nc|ENSG00000110693|P35712-3|SOX6	nc|ENSG00000110693|P35712-3|SOX6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.3582153320312	2	559.274572	1116.53459	0.30516	0.00017067	2.7914	0.0015612	3.0966	0.0017319	559.7787541358938	99.473	0.26067	97.148	96.951	97.212	-2.3253					5	4	2	0	0	0	0.02744	1	8848	8848		62.107	10.915	1	5703.3			46644	2786	38657	38679	50099	50099					-0.019014745536424016
QQMENVGSSH	10	Unmodified	_QQMENVGSSH_					0	0	0		nc|ENSG00000140368|O43586-2|PSTPIP1;ENSG00000140368|ENST00000558012|PSTPIP1	nc|ENSG00000140368|O43586-2|PSTPIP1	nc|ENSG00000140368|O43586-2|PSTPIP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	559.3575439453125	2	558.740562	1115.46657	0.45278	0.00025299	-3.8135	-0.0021307	-3.3607	-0.0018778	558.7383436864266	97.858	1.2264	96.9	96.118	97.344	-0.95857					47	24	2	0	0	0	0.026734	1	8807	8807		39.253	0	1	40813			46645	4833	38658	38680	50100	50100					-0.08654344204296649
QQMENVGSSH	10	Unmodified	_QQMENVGSSH_					0	0	0		nc|ENSG00000140368|O43586-2|PSTPIP1;ENSG00000140368|ENST00000558012|PSTPIP1	nc|ENSG00000140368|O43586-2|PSTPIP1	nc|ENSG00000140368|O43586-2|PSTPIP1	MULTI-SECPEP	OvCa9_classI_Rep3	3	559.359130859375	2	558.740562	1115.46657	-0.65678	-0.00036697	-2.8473	-0.0015909	-3.5041	-0.0019579	558.7387812633078	98.427	1.1873	96.667	96.262	97.45	-1.7595					45	22	3	0	0	0	0.026782	1	6600	6600		30.318	0	1	139190			46646	4833	38658	38680	50101	50101					-0.08654344204296649
QQNLNDLMLLQ	11	Unmodified	_QQNLNDLMLLQ_					0	0	0		ENSG00000172232|ENST00000233997|AZU1	ENSG00000172232|ENST00000233997|AZU1	ENSG00000172232|ENST00000233997|AZU1	MULTI-MSMS	OvCa99_classI_Rep5	1	443.89959716796875	3	443.899222	1328.67584	0.47262	0.0002098	-3.115	-0.0013827	-2.6424	-0.0011729	443.8977469657605	54.652	0.55738	54.652	54.422	54.98	0					32	12	3	0	0	0	0.076604	1	4421	4421		102.06	13.928	1	3010700			46647	7277	38659	38681	50102	50102					0.024644790289585217
QQNNVEHKV	9	Unmodified	_QQNNVEHKV_					0	0	0		ENST00000444127.1_1_1:68708159-68708657:-|nuORF;ENSG00000171863|ENST00000645674|RPS7;ENST00000484240.1_1_17:44798950-44799232:-|nuORF;ENST00000426405.1_1_X:73629614-73629932:+|nuORF	ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENST00000444127.1_1_1:68708159-68708657:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	548.2806396484375	2	548.280712	1094.54687	-1.1325	-0.0006209	0.63201	0.00034652	-0.50045	-0.00027438	548.2810270018356	27.517	0.79958	27.517	27.341	28.14	0					46	15	5	0	0	0	0.1804	1	814	814		79.713	20.931	1	1767600			46648	7243	38660	38682	50103	50103					0.003378851810339256
QQNPLVQRV	9	Unmodified	_QQNPLVQRV_					0	0	0		ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	ENSG00000221823|ENST00000234310|PPP3R1	MULTI-MSMS	OvCa99_classI_Rep5	1	541.3099975585938	2	541.309272	1080.60399	-0.98372	-0.0005325	-1.1531	-0.00062416	-2.1368	-0.0011567	541.308375845319	65.769	0.90191	65.769	65.426	66.328	0					37	22	2	0	0	0	0.12365	1	6064	6064		90.777	34.056	1	6165700			46649	9227	38661	38683	50104	50104					0.06691352457414723
QQNSGHFLR	9	Unmodified	_QQNSGHFLR_					0	0	0		ENSG00000137265|ENST00000380956|IRF4;nc|ENSG00000137265|Q15306-2|IRF4;ENST00000493114.1_1_6:406896-407595:+|nuORF	ENSG00000137265|ENST00000380956|IRF4	ENSG00000137265|ENST00000380956|IRF4	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.3269653320312	2	543.775597	1085.53664	-0.42478	-0.00023099	-0.34874	-0.00018964	-0.77352	-0.00042062	543.7754724046322	61.862	0.7929	61.862	61.542	62.335	0					29	18	2	0	0	0	0.027462	1	5483	5483		31.53	4.8369	1	872470			46650	4571	38662	38684	50105	50105					-0.002706777535195215
QQPFSQMLL	9	Unmodified	_QQPFSQMLL_					0	0	0		ENSG00000196123|ENST00000563902|MATCAP1;nc|ENSG00000196123|Q68EN5-2|MATCAP1	ENSG00000196123|ENST00000563902|MATCAP1	ENSG00000196123|ENST00000563902|MATCAP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.8292236328125	2	546.281334	1090.54812	-0.43576	-0.00023805	-3.4836	-0.001903	-3.9194	-0.0021411	546.7801443412209	98.579	1.1243	96.2	95.773	96.898	-2.3786					36	21	2	0	0	0	0.027447	1	8730	8730		56.721	9.0637	1	58249			46651	8565	38663	38685	50106	50106					0.00646383225603131
QQPITQPVL	9	Unmodified	_QQPITQPVL_					0	0	0			REV__nc|ENSG00000288701|Q5JSZ5-4|PRRC2B	REV__nc|ENSG00000288701|Q5JSZ5-4|PRRC2B	MULTI-SECPEP	OvCa9_classI_Rep2	2	511.8444519042969	2	512.295299	1022.57605	-0.32022	-0.00016404	0.81858	0.00041936	0.49837	0.00025531	512.2953851798785	83.423	1.0306	81.824	81.505	82.535	-1.5988					45	20	3	0	0	0	0.02744	1	7205	7205		71.877	21.853	1	50112	+		46652	29209	38664	38686	50107	50107					0.06566029477335178
QQPITQPVL	9	Unmodified	_QQPITQPVL_					0	0	0			REV__nc|ENSG00000288701|Q5JSZ5-4|PRRC2B	REV__nc|ENSG00000288701|Q5JSZ5-4|PRRC2B	MULTI-MATCH	OvCa9_classI_Rep3	3		2	512.295299	1022.57605	-0.91271	-0.00046758	1.4912	0.00076395	0.57852	0.00029637	512.2957004402438	84.119	1.0847	81.858	81.522	82.607	-2.261	-0.01275	0.00098751	NaN	71.877	39	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85985	+		46653	29209	38664	38686							0.06566029477335178
QQPLIAVALLG	11	Unmodified	_QQPLIAVALLG_					0	0	0		ENSG00000213699|ENST00000344420|SLC35F6	ENSG00000213699|ENST00000344420|SLC35F6	ENSG00000213699|ENST00000344420|SLC35F6	MULTI-MSMS	OvCa9_classI_Rep2	2	561.84521484375	2	561.847699	1121.68084	-3.2197	-0.001809	-0.49496	-0.00027809	-3.7146	-0.002087	561.8472802195274	152.47	1.17	152.24	151.83	153	-0.22697					70	23	4	0	0	0	0.72499	1	15550	15550		15.642	0	1	142980			46654	9141	38665	38687	50108	50108					0.12487150953870696
QQPNEAEIY	9	Unmodified	_QQPNEAEIY_					0	0	0			REV__ENST00000526480.1_1_11:33157665-33182871:-|nuORF	REV__ENST00000526480.1_1_11:33157665-33182871:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.7981567382812	2	546.253828	1090.4931	-0.87538	-0.00047818	1.8591	0.0010156	0.98376	0.00053738	546.2542222155396	28.436	0.39836	28.436	28.14	28.539	0					10	7	2	0	0	0	0.027462	1	898	898		24.203	6.8378	1	16642	+		46655	27139	38666	38688	50109	50109					-0.048523320413323745
QQPPPQLQLQ	10	Unmodified	_QQPPPQLQLQ_					0	0	0		nc|ENSG00000165300|O94991-2|SLITRK5;ENSG00000165300|ENST00000683689|SLITRK5	nc|ENSG00000165300|O94991-2|SLITRK5	nc|ENSG00000165300|O94991-2|SLITRK5	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.7587890625	2	588.822212	1175.62987	2.6755	0.0015754	-4.3041	-0.0025343	-1.6286	-0.00095895	589.3188595973919	86.462	0.28686	86.462	86.35	86.637	0					8	6	2	0	0	0	0.026802	1	9109	9109		51.335	8.9393	1	376210			46656	6549	38667	38689	50110	50110					0.04908201909051968
QQPPVAPLAL	10	Unmodified	_QQPPVAPLAL_					0	0	0			REV__nc|ENSG00000119630|P49763|PGF	REV__nc|ENSG00000119630|P49763|PGF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.3251342773438	2	517.305667	1032.59678	-0.41865	-0.00021657	3.3396	0.0017276	2.921	0.001511	517.306957820519	105.7	0.55453	103.68	103.5	104.05	-2.0161					23	10	4	0	0	0	0.027839	1	9621	9621		82.305	34.389	1	25965	+		46657	28815	38668	38690	50111	50111					0.08178619856971636
QQPRPLMA	8	Unmodified	_QQPRPLMA_					0	0	0		ENST00000495418.5_1_3:111842304-111846933:-|nuORF;nc|ENSG00000174500|Q8N6F7-3|GCSAM;ENSG00000174500|ENST00000308910|GCSAM;nc|ENSG00000174500|Q8N6F7-2|GCSAM	ENST00000495418.5_1_3:111842304-111846933:-|nuORF	ENST00000495418.5_1_3:111842304-111846933:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	470.75506591796875	2	470.755287	939.496021	-0.44874	-0.00021125	0.27695	0.00013038	-0.17179	-8.0871E-05	470.7553249090684	59.508	1.6722	56.728	56.189	57.861	-2.7801					72	31	4	0	0	0	0.73288	1	4369	4369		35.201	1.6851	1	496080			46658	7471	38669	38691	50112	50112					0.023852646024920432
QQQGPTSTARV	11	Unmodified	_QQQGPTSTARV_					0	0	0		ENST00000409404.6_1_11:92085423-92085492:+|nuORF	ENST00000409404.6_1_11:92085423-92085492:+|nuORF	ENST00000409404.6_1_11:92085423-92085492:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.8037109375	2	586.804551	1171.59455	-6.8597	-0.0040253	4.3667	0.0025624	-2.4931	-0.001463	586.8069299890403	160.36	3.1265	158.75	158.28	161.4	-1.61					144	76	3	0	0	0	0.70142	1	15939	15939		29.17	0	1	162470			46659	11525	38670	38692	50113	50113					0.01561539381214061
QQQKSVFEI	9	Unmodified	_QQQKSVFEI_					0	0	0		ENSG00000168769|ENST00000380013|TET2;nc|ENSG00000168769|Q6N021-2|TET2;nc|ENSG00000168769|Q6N021-3|TET2	ENSG00000168769|ENST00000380013|TET2	ENSG00000168769|ENST00000380013|TET2	MULTI-MSMS	OvCa99_classI_Rep5	1	553.7954711914062	2	553.795663	1105.57677	-0.64012	-0.00035449	-0.28745	-0.00015919	-0.92756	-0.00051368	553.7956335465983	44.46	0.6708	44.46	44.215	44.886	0					46	14	5	0	0	0	0.38969	1	3000	3000		52.937	1.744	1	1590000			46660	6939	38671	38693	50114	50114					0.028208241263882883
QQQLQQQQP	9	Unmodified	_QQQLQQQQP_					0	0	0		nc|ENSG00000292995|Q17RH7|TPRXL	nc|ENSG00000292995|Q17RH7|TPRXL	nc|ENSG00000292995|Q17RH7|TPRXL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	562.8150024414062	2	563.285994	1124.55744	0.92867	0.00052311	-4.2287	-0.002382	-3.3	-0.0018588	563.2835046735433	63.252	1.1063	59.777	59.433	60.539	-3.475					32	22	2	0	0	0	0.027462	1	4457	4457		35.618	3.6634	1	45635			46661	15404	38672	38694	50115	50115					0.00013867835468772682
QQQLQQQQP	9	Unmodified	_QQQLQQQQP_					0	0	0		nc|ENSG00000292995|Q17RH7|TPRXL	nc|ENSG00000292995|Q17RH7|TPRXL	nc|ENSG00000292995|Q17RH7|TPRXL	MULTI-MATCH	OvCa9_classI_Rep2	2		2	563.285994	1124.55744	-1.4593	-0.00082202	-1.3581	-0.00076501	-2.8175	-0.001587	563.2854219726837	62.482	0.55795	59.723	59.483	60.041	-2.7593	-0.02732	0.0027241	NaN	20.947	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9682.6			46662	15404	38672	38694							0.00013867835468772682
QQQNEKIL	8	Unmodified	_QQQNEKIL_					0	0	0		PIGS-SPAG5|1|fusion;ENSG00000076382|ENST00000321765|SPAG5;ENST00000582175.1_1_17:26905378-26905749:-|nuORF;ENST00000580676.1_1_17:26905530-26906263:-|nuORF	PIGS-SPAG5|1|fusion	PIGS-SPAG5|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.7242126464844	2	500.774731	999.534909	-0.055211	-2.7649E-05	-0.59707	-0.000299	-0.65228	-0.00032665	500.77442998167135	71.691	0.73326	71.691	71.267	72	0					32	17	3	0	0	0	0.028476	1	6961	6961		38.806	0	1	1202000			46663	15499	38673	38695	50116	50116					0.03512268437862076
QQQQQSEL	8	Unmodified	_QQQQQSEL_					0	0	0		nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC	nc|ENSG00000136997|P01106-1|MYC	nc|ENSG00000136997|P01106-1|MYC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.3020324707031	2	494.738345	987.462138	-1.5402	-0.00076201	-1.0354	-0.00051225	-2.5756	-0.0012743	494.7377369853079	126.95	0.64537	125.51	125.24	125.89	-1.4357					24	12	3	0	0	0	0.028476	1	12070	12070		38.806	0	1	25475			46664	4547	38674	38696	50117	50117					-0.032094853555577174
QQQSVVFSG	9	Unmodified	_QQQSVVFSG_					0	0	0		nc|ENSG00000082269|Q9P2D6-3|FAM135A;nc|ENSG00000082269|Q9P2D6-2|FAM135A;nc|ENSG00000082269|Q9P2D6-4|FAM135A;ENSG00000082269|ENST00000418814|FAM135A;FAM135A|p.W1194Cfs*23|1|0.12|ENSG00000082269|chr6:70526665-70526666|-/TTCCTGCT|frameshift_variant	nc|ENSG00000082269|Q9P2D6-3|FAM135A	nc|ENSG00000082269|Q9P2D6-3|FAM135A	MULTI-MSMS	OvCa9_classI_Rep2	2	490.24505615234375	2	490.245806	978.47706	-1.2971	-0.00063592	-0.0036646	-1.7965E-06	-1.3008	-0.00063771	490.24574571549454	62.48	3.0118	59.721	59.187	62.199	-2.7593					88	57	2	0	0	0	0.56889	1	4695	4695		35.618	0	1	956700			46665	1675	38675	38697	50118	50118					-0.01303993487556454
QQQVCGQQLPE	11	Unmodified	_QQQVCGQQLPE_					0	0	0		ENST00000390331.3_1_22:23264886-23265036:+|nuORF	ENST00000390331.3_1_22:23264886-23265036:+|nuORF	ENST00000390331.3_1_22:23264886-23265036:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.8931579589844	3	419.867922	1256.58194	0.33125	0.00013908	2.9441	0.0012361	3.2754	0.0013752	419.8690653461127	30.892	1.3241	30.892	30.383	31.708	0					38	26	2	0	0	0	0.025668	1	1195	1195		22.562	15.902	1	67850			46666	11203	38676	38698	50119	50119					-0.03609240073319597
QQQYLRQA	8	Unmodified	_QQQYLRQA_					0	0	0		ENSG00000198060|ENST00000358935|MARCHF5	ENSG00000198060|ENST00000358935|MARCHF5	ENSG00000198060|ENST00000358935|MARCHF5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.2900390625	2	517.772522	1033.53049	-1.1494	-0.00059513	1.4093	0.0007297	0.2599	0.00013457	517.7722447141576	53.548	0.76717	50.34	50.097	50.864	-3.208					21	14	2	0	0	0	0.028476	1	3279	3279		52.299	16.681	1	22146			46667	8779	38677	38699	50120	50120					0.01506804014957197
QQREEKSQWEF	11	Unmodified	_QQREEKSQWEF_					0	0	0		nc|ENSG00000100503|Q8N4C6-4|NIN;NIN|p.E2037Rfs*4|1|0.05|ENSG00000100503|chr14:50726036-50726036|C/-|frameshift_variant;nc|ENSG00000100503|Q8N4C6-9|NIN;nc|ENSG00000100503|Q8N4C6-2|NIN;nc|ENSG00000100503|Q8N4C6|NIN;nc|ENSG00000100503|Q8N4C6-5|NIN;nc|ENSG00000100503|Q8N4C6-10|NIN;ENSG00000100503|ENST00000530997|NIN;NIN|p.T1158Qfs*6|1|0.36|ENSG00000100503|chr14:50757527-50757558|ACTTCCTGTCTCTGAACAGAGCTCGTCCCTGT/-|frameshift_variant;NIN|p.S1483Wfs*13|1|0.28|ENSG00000100503|chr14:50756578-50756582|GTGAG/-|frameshift_variant	nc|ENSG00000100503|Q8N4C6-4|NIN	nc|ENSG00000100503|Q8N4C6-4|NIN	MULTI-MSMS	OvCa9_classI_Rep3	3	498.9029235839844	3	498.903912	1493.68991	0.28335	0.00014137	-3.9848	-0.001988	-3.7015	-0.0018467	498.9020412364207	70.004	2.0082	67.284	66.956	68.964	-2.7196					135	39	5	0	0	0	0.70315	1	3170	3170		28.577	0.19296	1	986810			46668	2077	38678	38700	50121	50121					-0.03719152218400268
QQRIDRLALL	10	Unmodified	_QQRIDRLALL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.K1766Qfs*38|1|0.11|ENSG00000137497|chr11:72007356-72007357|-/G|frameshift_variant;nc|ENSG00000137497|Q14980-5|NUMA1;NUMA1|p.F1195Sfs*43|1|0.13|ENSG00000137497|chr11:72013921-72013921|G/-|frameshift_variant;NUMA1|p.A777Pfs*34|1|0.17|ENSG00000137497|chr11:72015174-72015174|C/-|frameshift_variant;ENST00000534987.5_1_11:71728600-71747007:-|nuORF	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	OvCa9_classI_Rep2	2	409.5823974609375	3	409.250695	1224.73025	0.015139	6.1955E-06	-3.4881	-0.0014275	-3.4729	-0.0014213	409.58314400112266	60.939	1.5625	58.169	57.712	59.275	-2.7702					83	29	4	0	0	0	0.66944	1	4519	4519		33.922	3.3528	1	518620			46669	4591	38679	38701	50122	50122					0.12687858962704013
QQRIDRLALL	10	Unmodified	_QQRIDRLALL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.K1766Qfs*38|1|0.11|ENSG00000137497|chr11:72007356-72007357|-/G|frameshift_variant;nc|ENSG00000137497|Q14980-5|NUMA1;NUMA1|p.F1195Sfs*43|1|0.13|ENSG00000137497|chr11:72013921-72013921|G/-|frameshift_variant;NUMA1|p.A777Pfs*34|1|0.17|ENSG00000137497|chr11:72015174-72015174|C/-|frameshift_variant;ENST00000534987.5_1_11:71728600-71747007:-|nuORF	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	409.250695	1224.73025	0.96448	0.00039471	-4.2252	-0.0017292	-3.2607	-0.0013344	409.58279100851803	61.937	1.3927	58.48	58.01	59.403	-3.4577	0.15544	-0.00048178	NaN	33.922	87	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	366010			46670	4591	38679	38701							0.12687858962704013
QQRKERLYLLR	11	Unmodified	_QQRKERLYLLR_					0	0	0		ENST00000433398.1_1_7:66071742-66071856:-|nuORF	ENST00000433398.1_1_7:66071742-66071856:-|nuORF	ENST00000433398.1_1_7:66071742-66071856:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	501.6338806152344	3	501.63532	1501.88413	-5.5139	-0.002766	3.033	0.0015215	-2.4809	-0.0012445	501.63686894791874	162.29	1.9089	162.06	160.59	162.5	-0.22696					90	37	3	0	0	0	0.72548	2	16565	16503;16565		9.2118	3.2108	1	106580			46671	11831	38680	38702	50123;50124	50124					0.15326268728222203
QQRLMVKGR	9	Unmodified	_QQRLMVKGR_					0	0	0			REV__SETD5|p.R1157Ifs*12|1|0.41|ENSG00000168137|chr3:9473509-9473521|AGACCTCAAGAGA/-|frameshift_variant	REV__SETD5|p.R1157Ifs*12|1|0.41|ENSG00000168137|chr3:9473509-9473521|AGACCTCAAGAGA/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.2687377929688	2	558.326942	1114.63933	-0.43864	-0.00024491	1.266	0.00070686	0.82739	0.00046195	558.3285853783262	37.239	0.32587	37.239	37.159	37.485	0					8	6	2	0	0	0	0.027462	1	2048	2048		16.473	0	1	30880	+		46672	21349	38681	38703	50125	50125					0.0865969171359211
QQRLPGRLR	9	Unmodified	_QQRLPGRLR_					0	0	0			REV__ENST00000366623.7_1_1:233463519-233463630:+|nuORF	REV__ENST00000366623.7_1_1:233463519-233463630:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.34228515625	2	562.343981	1122.67341	1.2434	0.00069921	-2.2131	-0.0012445	-0.96974	-0.00054533	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.59983	1	13845	13845		31.955	5.2619	1	683710	+		46673	24881	38682	38704	50126	50126					0.11697856196838075
QQRLPWAGQRQ	11	Unmodified	_QQRLPWAGQRQ_					0	0	0		ENST00000582035.1_1_17:43530658-43531768:-|nuORF	ENST00000582035.1_1_17:43530658-43531768:-|nuORF	ENST00000582035.1_1_17:43530658-43531768:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.7518615722656	3	456.581215	1366.72182	0.42964	0.00019616	-2.7953	-0.0012763	-2.3657	-0.0010801	456.5800125978526	61.028	0.34951	57.598	57.395	57.744	-3.43					8	6	2	0	0	0	0.025955	1	4138	4138		37.508	10.461	1	13842			46674	14002	38683	38705	50127	50127					0.05312305046072652
QQRMPTLEHT	10	Unmodified	_QQRMPTLEHT_					0	0	0		FAM83B|p.S841Afs*9|1|0.07|ENSG00000168143|chr6:54941492-54941492|A/-|frameshift_variant;FAM83B|p.K819Nfs*31|1|0.04|ENSG00000168143|chr6:54941425-54941425|G/-|frameshift_variant;ENSG00000168143|ENST00000306858|FAM83B	FAM83B|p.S841Afs*9|1|0.07|ENSG00000168143|chr6:54941492-54941492|A/-|frameshift_variant	FAM83B|p.S841Afs*9|1|0.07|ENSG00000168143|chr6:54941492-54941492|A/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	413.2278747558594	3	414.208278	1239.60301	0.34966	0.00014483	2.5858	0.0010711	2.9355	0.0012159	414.20931421647293	54.488	1.7559	54.488	54.008	55.764	0					94	41	3	0	0	0	0.026802	1	4577	4577		25.126	15.914	1	548940			46675	6877	38684	38706	50128	50128					-0.007212299737830108
QQRPQNYR	8	Unmodified	_QQRPQNYR_					0	0	0		ENSG00000184560|ENST00000333870|SPEM2	ENSG00000184560|ENST00000333870|SPEM2	ENSG00000184560|ENST00000333870|SPEM2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.3063354492188	2	545.281046	1088.54754	-0.21961	-0.00011975	-2.931	-0.0015982	-3.1506	-0.001718	545.7830424594492	38.774	0.34648	35.848	35.601	35.948	-2.9264					8	6	2	0	0	0	0.028476	1	1533	1533		25.45	0	1	7589			46676	8169	38685	38707	50129	50129					0.006807246207472417
QQRRAVSEE	9	Unmodified	_QQRRAVSEE_					0	0	0			REV__ENSG00000181215|ENST00000531445|C4orf50	REV__ENSG00000181215|ENST00000531445|C4orf50	MULTI-MSMS	OvCa99_classI_Rep5	1	551.78369140625	2	551.783619	1101.55268	-0.4863	-0.00026833	-3.131	-0.0017276	-3.6173	-0.0019959	551.7819029267409	23.707	1.1388	23.707	23.297	24.436	0					34	22	2	0	0	0	0.62352	1	379	379		29.15	6.1071	1	32993	+		46677	22221	38686	38708	50130	50130					0.00596983692730646
QQRREEEP	8	Unmodified	_QQRREEEP_					0	0	0			REV__ENSG00000159450|ENST00000614923|TCHH	REV__ENSG00000159450|ENST00000614923|TCHH	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3294067382812	2	536.262519	1070.51048	-1.031	-0.00055288	-2.6599	-0.0014264	-3.6909	-0.0019793	536.2608884296478	34.762	0.41863	34.762	34.539	34.957	0					11	8	2	0	0	0	0.028476	1	1681	1681		42.396	13.226	1	59818	+		46678	20616	38687	38709	50131	50131					-0.02194991715668948
QQSAIKIKF	9	Unmodified	_QQSAIKIKF_					0	0	0			REV__ENST00000409262.7_1_2:74332253-74332547:+|nuORF	REV__ENST00000409262.7_1_2:74332253-74332547:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	531.816162109375	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.59259	1	11601	11601		32.812	1.2826	1	178650	+		46679	25464	38688	38710	50132	50132					0.09498308748334239
QQSGGKEEVVL	11	Unmodified	_QQSGGKEEVVL_					0	0	0		tr|A0A553SF96|A0A553SF96_NIACIInositol2-dehydrogenase/D-chiro-inositol3-dehydrogenaseOS=NialliacirculansOX=1397GN=iolGPE=3SV=1	tr|A0A553SF96|A0A553SF96_NIACIInositol2-dehydrogenase/D-chiro-inositol3-dehydrogenaseOS=NialliacirculansOX=1397GN=iolGPE=3SV=1	tr|A0A553SF96|A0A553SF96_NIACIInositol2-dehydrogenase/D-chiro-inositol3-dehydrogenaseOS=NialliacirculansOX=1397GN=iolGPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	587.3107299804688	2	587.309135	1172.60372	2.4517	0.0014399	-0.17249	-0.0001013	2.2792	0.0013386	587.3089492964097	75.568	1.7671	75.568	74.676	76.443	0					81	37	4	0	0	0	0.27273	1	7520	7520		70.399	4.9332	1	3938400			46680	33009	38689	38711	50133	50133					0.02431887946909228
QQSGGKEEVVL	11	Unmodified	_QQSGGKEEVVL_					0	0	0		tr|A0A553SF96|A0A553SF96_NIACIInositol2-dehydrogenase/D-chiro-inositol3-dehydrogenaseOS=NialliacirculansOX=1397GN=iolGPE=3SV=1	tr|A0A553SF96|A0A553SF96_NIACIInositol2-dehydrogenase/D-chiro-inositol3-dehydrogenaseOS=NialliacirculansOX=1397GN=iolGPE=3SV=1	tr|A0A553SF96|A0A553SF96_NIACIInositol2-dehydrogenase/D-chiro-inositol3-dehydrogenaseOS=NialliacirculansOX=1397GN=iolGPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	587.309135	1172.60372	-2.004	-0.001177	0.6234	0.00036613	-1.3806	-0.00081085	587.3100305259286	78.036	1.2438	75.683	75.497	76.741	-2.3527	0.057417	0.00080193	NaN	70.399	27	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35401			46681	33009	38689	38711							0.02431887946909228
QQSHSSPG	8	Unmodified	_QQSHSSPG_					0	0	0		nc|ENSG00000197312|Q5TDH0-2|DDI2;ENST00000486680.1_1_1:15944165-15960061:+|nuORF;ENSG00000197312|ENST00000480945|DDI2;nc|ENSG00000197312|Q5TDH0-3|DDI2	nc|ENSG00000197312|Q5TDH0-2|DDI2	nc|ENSG00000197312|Q5TDH0-2|DDI2	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.90863037109375	2	414.185749	826.356944	0.47233	0.00019563	0.90637	0.0003754	1.3787	0.00057104	414.1859859857963	43.301	0.55097	43.301	43.057	43.608	0					20	12	2	0	0	0	0.028476	1	2880	2880		26.796	8.4717	1	210440			46682	8699	38690	38712	50134	50134					-0.06317981761321789
QQSLQLVVAIL	11	Unmodified	_QQSLQLVVAIL_					0	0	0			REV__ENSG00000117394|ENST00000426263|SLC2A1	REV__ENSG00000117394|ENST00000426263|SLC2A1	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3685913085938	2	606.371538	1210.72852	-2.264	-0.0013728	-1.0272	-0.00062285	-3.2912	-0.0019957	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.68684	1	12483	12483		34.173	0	1	205770	+		46683	18348	38691	38713	50135	50135					0.13158805154080255
QQSLVALVR	9	Unmodified	_QQSLVALVR_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5;SPTBN5|p.W1154Cfs*31|1|0.18|ENSG00000137877|chr15:41878350-41878351|-/TA|frameshift_variant	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MSMS	OvCa9_classI_Rep2	2	507.30792236328125	2	507.308741	1012.60293	-0.91362	-0.00046349	1.0188	0.00051685	0.10519	5.3362E-05	507.30906110170537	47.765	1.1428	45.055	44.737	45.879	-2.7097					43	22	3	0	0	0	0.50149	1	2928	2928		42.396	3.1433	1	157500			46684	4634	38692	38714	50136	50136					0.0971313808852301
QQTDLQLTL	9	Unmodified	_QQTDLQLTL_					0	0	0			REV__PLXNA3|p.I1452Rfs*8|1|0.29|ENSG00000130827|chrX:154468890-154468902|TTGATGCCATCAC/-|frameshift_variant	REV__PLXNA3|p.I1452Rfs*8|1|0.29|ENSG00000130827|chrX:154468890-154468902|TTGATGCCATCAC/-|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	530.294189453125	2	530.287671	1058.56079	NaN	NaN	NaN	NaN	NaN	NaN	NaN	158.62	1	158.62	158.12	159.12	0								0	0	0	0.17776	1	18590	18590		37.812	0	1		+		46685	18978	38693	38715	50137	50137					0.03385117889479261
QQTVPLAAV	9	Unmodified	_QQTVPLAAV_					0	0	0			REV__ENSG00000107372|ENST00000376962|ZFAND5	REV__ENSG00000107372|ENST00000376962|ZFAND5	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.76007080078125	2	463.768917	925.523281	-0.29438	-0.00013653	-1.7785	-0.00082484	-2.0729	-0.00096136	463.76955510988995	54.003	0.19454	54.003	53.854	54.048	0					5	4	2	0	0	0	0.027462	1	4312	4312		38.806	8.3025	1	80972	+		46686	17844	38694	38716	50138	50138					0.05754071414514783
QQVKLALA	8	Unmodified	_QQVKLALA_					0	0	0		nc|ENSG00000099797|Q9NZ01-2|TECR;ENST00000599101.5_1_19:14675534-14676680:+|nuORF;ENST00000593775.5_1_19:14675534-14676680:+|nuORF;ENSG00000099797|ENST00000215567|TECR;ENST00000593637.5_1_19:14674952-14675852:+|nuORF;ENST00000596953.5_1_19:14640508-14675852:+|nuORF	nc|ENSG00000099797|Q9NZ01-2|TECR	nc|ENSG00000099797|Q9NZ01-2|TECR	MULTI-MSMS	OvCa9_classI_Rep2	2	435.7750549316406	2	435.774003	869.533452	-0.2364	-0.00010302	0.2734	0.00011914	0.037001	1.6124E-05	435.7741032884305	32.795	0.34522	30.086	29.976	30.321	-2.7097					11	6	2	0	0	0	0.7043	1	1123	1123		42.474	0	1	21619			46687	1978	38695	38717	50139	50139					0.09346679139741809
QQVKVVSQ	8	Unmodified	_QQVKVVSQ_					0	0	0		ENSG00000062822|ENST00000440232|POLD1	ENSG00000062822|ENST00000440232|POLD1	ENSG00000062822|ENST00000440232|POLD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.9031982421875	2	458.266542	914.51853	0.15235	6.9818E-05	0.24351	0.00011159	0.39586	0.00018141	458.2666375853427	31.534	0.54283	31.534	31.264	31.807	0					21	10	3	0	0	0	0.028476	1	1292	1292		21.96	0	1	115840			46688	1281	38696	38718	50140	50140					0.05785187271771974
QQVQPQQQV	9	Unmodified	_QQVQPQQQV_					0	0	0			REV__ZFHX3|p.Q3201_Q3202insKV|1|0.05|ENSG00000140836|chr16:72788673-72788674|-/ACTTTT|inframe_insertion	REV__ZFHX3|p.Q3201_Q3202insKV|1|0.05|ENSG00000140836|chr16:72788673-72788674|-/ACTTTT|inframe_insertion	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.8067016601562	2	541.783087	1081.55162	-0.56322	-0.00030514	0.40849	0.00022131	-0.15473	-8.3832E-05	541.7832225431664	42.459	0.55419	42.459	42.199	42.753	0					23	12	2	0	0	0	0.02741	1	2704	2704		71.296	16.519	1	845000	+		46689	32767	38697	38719	50141	50141					0.014107693237974672
QQVVLDKTE	9	Unmodified	_QQVVLDKTE_					0	0	0			REV__ENST00000461171.1_1_20:44751345-44755513:+|nuORF	REV__ENST00000461171.1_1_20:44751345-44755513:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.2420654296875	2	530.287671	1058.56079	2.5498	0.0013521	2.0503	0.0010873	4.6001	0.0024394	530.2886189197804	75.707	0.51371	75.707	75.482	75.996	0					24	12	3	0	0	0	0.027453	1	7550	7550		45.972	0	1	1025700	+		46690	17467	38698	38720	50142	50142					0.03385117889456524
QQWNVRSP	8	Unmodified	_QQWNVRSP_					0	0	0		ENST00000525964.6_1_11:134022841-134052943:-|nuORF;ENSG00000151503|ENST00000534548|NCAPD3	ENST00000525964.6_1_11:134022841-134052943:-|nuORF	ENST00000525964.6_1_11:134022841-134052943:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.7892761230469	2	507.759415	1013.50428	-0.43528	-0.00022102	-1.664	-0.00084491	-2.0993	-0.0010659	507.7582045299016	47.163	0.30982	44.091	43.911	44.221	-3.0724					7	5	2	0	0	0	0.028476	1	2509	2509		34.173	3.6689	1	13618			46691	5561	38699	38721	50143	50143					-0.0019346515653069218
QQYDDEEDE	9	Unmodified	_QQYDDEEDE_					0	0	0			REV__ENSG00000106244|ENST00000350498|PDAP1	REV__ENSG00000106244|ENST00000350498|PDAP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	585.7081298828125	2	585.707105	1169.39966	-1.4881	-0.0008716	-1.9991	-0.0011709	-3.4872	-0.0020425	585.7067694670056	54.815	1.7326	51.568	51.285	53.017	-3.2474					92	33	5	0	0	0	0.5811	1	3427	3427		34.173	13.226	1	1096800	+		46692	17782	38700	38722	50144	50144					-0.1782672100509899
QQYRALTV	8	Unmodified	_QQYRALTV_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000188229|ENST00000340384|TUBB4B;CON__ENSEMBL:ENSBTAP00000025008;ENST00000290377.9_1_9:141071128-141071713:+|nuORF;ENST00000518096.1_1_8:30210219-30210855:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3;TUBB4A|p.M330Afs*87|1|0.08|ENSG00000104833|chr19:6495510-6495511|AT/-|frameshift_variant;ENSG00000104833|ENST00000264071|TUBB4A;ENSG00000261456|ENST00000568584|TUBB8;ENSG00000173213|ENST00000308911|TUBB8B;ENST00000415481.1_1_1:809210-809726:+|nuORF	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;TUBB4A|p.M330Afs*87|1|0.08|ENSG00000104833|chr19:6495510-6495511|AT/-|frameshift_variant;ENSG00000261456|ENST00000568584|TUBB8;ENST00000415481.1_1_1:809210-809726:+|nuORF	ENSG00000258947|ENST00000315491|TUBB3	MULTI-MSMS	OvCa99_classI_Rep5	1	489.772216796875	2	489.771991	977.529429	-0.94974	-0.00046516	0.01329	6.5089E-06	-0.93645	-0.00045865	489.7718234853168	65.485	1.3444	65.485	65.231	66.575	0					91	33	4	0	0	0	0.60331	1	6005	6005		63.306	2.3343	1	9578200			46693	9485;8579;2396;9502;11589	38701	38723	50145	50145					0.039765896460380645
QRALGRRKSQ	10	Unmodified	_QRALGRRKSQ_					0	0	0		nc|ENSG00000085982|Q9NVE5|USP40;ENSG00000085982|ENST00000678225|USP40;nc|ENSG00000085982|Q9NVE5-3|USP40	nc|ENSG00000085982|Q9NVE5|USP40	nc|ENSG00000085982|Q9NVE5|USP40	MULTI-MSMS	OvCa99_classI_Rep5	1	400.5757141113281	3	400.574172	1198.70069	0.7308	0.00029274	2.4006	0.00096161	3.1314	0.0012544	400.57520348965	25.919	1.2988	25.919	25.643	26.942	0					76	25	6	0	0	0	0.53396	1	640	640		50.034	2.074	1	3687900			46694	1744	38702	38724	50146	50146					0.10928339737233728
QRAQLRELLQR	11	Unmodified	_QRAQLRELLQR_					0	0	0			REV__ENST00000468290.1_1_9:136198707-136199617:-|nuORF	REV__ENST00000468290.1_1_9:136198707-136199617:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	470.9480285644531	3	470.947786	1409.82153	-0.10608	-4.9957E-05	0.76982	0.00036255	0.66375	0.00031259	470.94806579910886	23.14	1.0145	23.14	22.821	23.836	0					50	20	4	0	0	0	0.72511	1	278	278		14.086	1.6532	1	282680	+		46695	20098	38703	38725	50147	50147					0.1330112266002743
QRARKSTVIVL	11	Unmodified	_QRARKSTVIVL_					0	0	0			REV__tr|A0A7D6VSC7|A0A7D6VSC7_9CLOTDNA-directedRNApolymerasesubunitomegaOS=ClostridiumintestinaleOX=36845GN=rpoZPE=3SV=1	REV__tr|A0A7D6VSC7|A0A7D6VSC7_9CLOTDNA-directedRNApolymerasesubunitomegaOS=ClostridiumintestinaleOX=36845GN=rpoZPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	424.27020263671875	3	424.269978	1269.7881	2.1849	0.00092699	-2.2031	-0.00093471	-0.018199	-7.7214E-06	424.26901414012116	62.593	1.0533	59.559	59.313	60.366	-3.0339					48	20	4	0	0	0	0.70032	1	2278	2278		29.551	2.5034	1	93226	+		46696	31487	38704	38726	50148	50148					0.16400120888124547
QRASPCCFCC	10	Unmodified	_QRASPCCFCC_					0	0	0			REV__ENSG00000114698|ENST00000354952|PLSCR4	REV__ENSG00000114698|ENST00000354952|PLSCR4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.3353881835938	2	559.205932	1116.39731	0.18479	0.00010334	1.2013	0.00067175	1.3861	0.00077509	559.2080376007715	106.38	0.14854	104.37	104.26	104.41	-2.0161					4	2	2	0	0	0	0.026553	1	9680	9680		47.657	5.2612	1	10170	+		46697	18196	38705	38727	50149	50149					-0.1562316602073679
QRAVAINRL	9	Unmodified	_QRAVAINRL_					0	0	0		ENST00000461589.1_1_20:18448072-18449711:+|nuORF;ENST00000475192.1_1_20:18448105-18453554:+|nuORF;ENSG00000132664|ENST00000377603|POLR3F;ENST00000462997.5_1_20:18448220-18464199:+|nuORF	ENST00000461589.1_1_20:18448072-18449711:+|nuORF	ENST00000461589.1_1_20:18448072-18449711:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	520.8212280273438	2	520.819807	1039.62506	-1.056	-0.00054999	0.72875	0.00037955	-0.32726	-0.00017044	520.8200254160117	52.151	0.60974	52.151	51.912	52.522	0					34	13	4	0	0	0	0.031958	1	4068	4068		133.81	31.039	1	1146800			46698	4157	38706	38728	50150	50150					0.10683362556937936
QRDNVIIK	8	Unmodified	_QRDNVIIK_					0	0	0			REV__ENSG00000100220|ENST00000216038|RTCB	REV__ENSG00000100220|ENST00000216038|RTCB	MULTI-MSMS	OvCa9_classI_Rep2	2	493.29241943359375	2	493.293091	984.571629	-0.24876	-0.00012271	-0.23923	-0.00011801	-0.48798	-0.00024072	493.292822764803	32.904	0.79625	30.194	29.976	30.772	-2.7097					37	15	3	0	0	0	0.74229	1	1153	1153		30.504	1.3541	1	162900	+		46699	17381	38707	38729	50151	50151					0.07872565054435654
QREAHQTNSE	10	Unmodified	_QREAHQTNSE_					0	0	0		L1PA7_dup9238|chr10:48372221-48377370:+|1.4943041569802586|0.2795461482764699|2.42|429.0|108|3|sense	L1PA7_dup9238|chr10:48372221-48377370:+|1.4943041569802586|0.2795461482764699|2.42|429.0|108|3|sense	L1PA7_dup9238|chr10:48372221-48377370:+|1.4943041569802586|0.2795461482764699|2.42|429.0|108|3|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	600.2738647460938	2	600.273615	1198.53268	-5.913	-0.0035494	3.296	0.0019785	-2.617	-0.0015709	600.2754165352742	160.39	2.7294	158.78	158.34	161.07	-1.6101					180	65	4	0	0	0	0.69073	1	16016	16016		31.53	8.0071	1	309270			46700	14763	38708	38730	50152	50152					-0.05864812037930278
QREDSKQSRL	10	Unmodified	_QREDSKQSRL_					0	0	0			REV__ENSG00000089154|ENST00000300648|GCN1	REV__ENSG00000089154|ENST00000300648|GCN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	416.2449951171875	3	416.221464	1245.64256	0.87047	0.00036231	-4.4475	-0.0018512	-3.5771	-0.0014889	416.2193885520578	72.772	0.3438	72.772	72.61	72.954	0					16	8	2	0	0	0	0.026676	1	7109	7109		32.034	0	1	392710	+		46701	17200	38709	38731	50153	50153					0.029566133012849605
QREEISKLRKK	11	Unmodified	_QREEISKLRKK_					0	0	0			REV__nc|ENSG00000122779|O15164-2|TRIM24	REV__nc|ENSG00000122779|O15164-2|TRIM24	MULTI-MSMS	OvCa9_classI_Rep3	3	472.28369140625	3	472.287808	1413.8416	-6.0447	-0.0028549	-2.5284	-0.0011941	-8.5731	-0.004049	472.28675973301637	159.08	3.3809	157.81	156.71	160.09	-1.267					177	72	4	0	0	0	0.72483	1	13740	13740		17.833	5.4003	1	110830	+		46702	18614	38710	38732	50154	50154					0.15122873599966624
QRERFFLLTER	11	Unmodified	_QRERFFLLTER_					0	0	0			REV__HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|160|3|anti-sense	REV__HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|160|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	498.9430847167969	3	498.944042	1493.8103	0.10419	5.1986E-05	-1.7683	-0.00088228	-1.6641	-0.00083029	498.9431829113185	80.386	6.5904	78.69	78.321	84.911	-1.6951					347	130	6	0	0	0	0.70848	1	6826	6826		26.75	3.3718	1	5429500	+		46703	28285	38711	38733	50155	50155					0.08314300565893973
QRERFFLLTER	11	Unmodified	_QRERFFLLTER_					0	0	0			REV__HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|160|3|anti-sense	REV__HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|160|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.94464111328125	3	498.944042	1493.8103	-1.0023	-0.00050008	-0.58525	-0.00029201	-1.5875	-0.00079209	498.9437780016878	81.177	4.5443	78.467	78.101	82.645	-2.7106					241	93	6	0	0	0	0.70848	1	6716	6716		26.75	4.1881	1	6586900	+		46704	28285	38711	38733	50156	50156					0.08314300565893973
QRERIKIEKEI	11	Unmodified	_QRERIKIEKEI_					0	0	0			REV__PHLDB2|p.V1096I|1|0.05|ENSG00000144824|chr3:111967795-111967795|G/A|missense_variant	REV__PHLDB2|p.V1096I|1|0.05|ENSG00000144824|chr3:111967795-111967795|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	481.2826843261719	3	481.287697	1440.84126	-6.6786	-0.0032143	-1.9719	-0.00094904	-8.6505	-0.0041634	481.2868612614486	161.01	3.7232	159.65	158.49	162.21	-1.3523					206	77	3	0	0	0	0.72524	1	13979	13979		12.433	1.846	1	127690	+		46705	29293	38712	38734	50157	50157					0.13847453880134708
QRFKLDEI	8	Unmodified	_QRFKLDEI_					0	0	0			REV__CNTLN|p.K1206Sfs*15|1|0.3|ENSG00000044459|chr9:17466063-17466063|A/-|frameshift_variant	REV__CNTLN|p.K1206Sfs*15|1|0.3|ENSG00000044459|chr9:17466063-17466063|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	524.7942504882812	2	524.792924	1047.57129	-1.3536	-0.00071034	0.94436	0.0004956	-0.4092	-0.00021474	524.7933479573511	91.486	1.1059	89.462	89.029	90.135	-2.0241					59	21	3	0	0	0	0.61436	1	5750	5750		60.972	0	1	656110	+		46706	16156	38713	38735	50158	50158					0.049411453345555856
QRFSRPRNL	9	Unmodified	_QRFSRPRNL_					0	0	0		ENST00000601476.1_1_19:42462288-42463399:-|nuORF;ENSG00000105404|ENST00000222008|RABAC1	ENST00000601476.1_1_19:42462288-42463399:-|nuORF	ENST00000601476.1_1_19:42462288-42463399:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	587.3314819335938	2	587.333613	1172.65267	-0.81101	-0.00047633	-0.11894	-6.9858E-05	-0.92995	-0.00054619	587.3334900830839	39.733	0.8304	39.733	39.463	40.294	0					43	18	4	0	0	0	0.50149	1	2347	2347		42.396	0	1	3852000			46707	2454	38714	38736	50159	50159					0.07325265817189575
QRGGIKLHKN	10	Unmodified	_QRGGIKLHKN_					0	0	0		nc|ENSG00000188483|Q5T953-2|IER5L;ENSG00000188483|ENST00000372491|IER5L;ENSG00000162783|ENST00000367577|IER5	nc|ENSG00000188483|Q5T953-2|IER5L;ENSG00000162783|ENST00000367577|IER5	nc|ENSG00000188483|Q5T953-2|IER5L	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8433837890625	2	575.843813	1149.67307	-2.8608	-0.0016474	1.7444	0.0010045	-1.1164	-0.00064289	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.81992	1	14820	14820		16.473	0.83134	1	356230			46708	8472;6236	38715	38737	50160	50160					0.10422436476960684
QRGLAARPVR	10	Unmodified	_QRGLAARPVR_					0	0	0			REV__ENST00000514480.1_2_4:76439804-76440107:+|nuORF	REV__ENST00000514480.1_2_4:76439804-76440107:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3430786132812	2	562.343981	1122.67341	1.2434	0.00069921	-2.2131	-0.0012445	-0.96974	-0.00054533	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.72319	1	14126	14126		27.882	0	1	683710	+		46709	26986	38716	38738	50161	50161					0.11697856196815337
QRGPRPLGG	9	Unmodified	_QRGPRPLGG_					0	0	0			REV__ENSG00000185742|ENST00000327419|C11orf87	REV__ENSG00000185742|ENST00000327419|C11orf87	MULTI-SECPEP	OvCa99_classI_Rep5	1	468.95086669921875	2	469.26995	936.525347	0.096428	4.5251E-05	0.28201	0.00013234	0.37844	0.00017759	469.2698951317582	21.921	0.13622	21.921	21.827	21.964	0					6	4	2	0	0	0	0.027462	1	157	157		24.203	1.1603	1	12079	+		46710	22525	38717	38739	50162	50162					0.0545454494298383
QRHLDKEIV	9	Unmodified	_QRHLDKEIV_					0	0	0			REV__ENSG00000169221|ENST00000409939|TBC1D10B	REV__ENSG00000169221|ENST00000409939|TBC1D10B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	569.8353271484375	2	569.32238	1136.63021	-0.3661	-0.00020843	2.3981	0.0013653	2.032	0.0011568	569.3241222966467	99.447	0.67249	97.121	96.795	97.468	-2.3253					29	12	4	0	0	0	0.027462	1	8906	8906		31.53	8.0071	1	34562	+		46711	21445	38718	38740	50163	50163					0.06735621628899935
QRHRYLSHL	9	Unmodified	_QRHRYLSHL_					0	0	0		ENSG00000022840|ENST00000325954|RNF10;nc|ENSG00000022840|Q8N5U6-2|RNF10	ENSG00000022840|ENST00000325954|RNF10	ENSG00000022840|ENST00000325954|RNF10	MULTI-MSMS	OvCa99_classI_Rep5	1	605.281494140625	2	605.333613	1208.65267	1.3064	0.00079083	3.1267	0.0018927	4.4331	0.0026835	605.3355227759525	155.78	0.71515	155.78	155.43	156.14	0					34	13	3	0	0	0	0.59259	1	18275	18275		18.324	2.3176	1	138460			46712	1032	38719	38741	50164	50164					0.05669265817186897
QRIAAFRECE	10	Unmodified	_QRIAAFRECE_					0	0	0		ENST00000487273.6_1_8:38873698-38874776:+|nuORF	ENST00000487273.6_1_8:38873698-38874776:+|nuORF	ENST00000487273.6_1_8:38873698-38874776:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	611.8018798828125	2	611.803497	1221.59244	-0.079544	-4.8665E-05	-4.4587	-0.0027279	-4.5383	-0.0027765	611.8005625546559	61.956	0.67419	61.956	61.704	62.378	0					40	15	4	0	0	0	0.53885	1	5497	5497		49.442	7.0454	1	2422700			46713	12640	38720	38742	50165	50165					-0.009492126282339086
QRIAAFRECE	10	Unmodified	_QRIAAFRECE_					0	0	0		ENST00000487273.6_1_8:38873698-38874776:+|nuORF	ENST00000487273.6_1_8:38873698-38874776:+|nuORF	ENST00000487273.6_1_8:38873698-38874776:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	611.803497	1221.59244	-0.029821	-1.8245E-05	-4.2259	-0.0025854	-4.2557	-0.0026037	611.8013489028162	65.053	0.72711	62.328	61.864	62.591	-2.7245	0.18627	0.00025994	NaN	49.442	20	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18909			46714	12640	38720	38742							-0.009492126282339086
QRIEWRKWKQQ	11	Unmodified	_QRIEWRKWKQQ_					0	0	0		ENSG00000198917|ENST00000361256|SPOUT1	ENSG00000198917|ENST00000361256|SPOUT1	ENSG00000198917|ENST00000361256|SPOUT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.2958984375	3	529.295186	1584.86373	-0.92122	-0.0004876	4.115	0.0021781	3.1938	0.0016905	529.2973943446033	21.891	1.5143	20.552	20.27	21.785	-1.3386					128	35	6	0	0	0	0.72573	1	271	271		6.001	2.5923	1	1347900			46715	8908	38721	38743	50166	50166					0.09469098068393578
QRKFKMLP	8	Unmodified	_QRKFKMLP_					0	0	0		ENST00000486362.1_1_9:124584274-124585120:-|nuORF;ENSG00000175764|ENST00000321582|TTLL11	ENST00000486362.1_1_9:124584274-124585120:-|nuORF	ENST00000486362.1_1_9:124584274-124585120:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2390747070312	2	524.310229	1046.60591	1.4637	0.00076742	-4.2829	-0.0022456	-2.8192	-0.0014781	524.3078261977978	110.2	1.1649	110.2	109.77	110.94	0					33	25	2	0	0	0	0.028476	1	12463	12463		38.806	6.8513	1	269920			46716	7562	38722	38744	50167	50167					0.08446689941683871
QRKKKEILR	9	Unmodified	_QRKKKEILR_					0	0	0			REV__nc|ENSG00000118849|P49788-2|RARRES1	REV__nc|ENSG00000118849|P49788-2|RARRES1	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.2305908203125	3	400.262935	1197.76697	1.4785	0.00059177	-4.1537	-0.0016626	-2.6753	-0.0010708	400.2611865526029	31.035	0.19365	31.035	30.93	31.124	0					5	3	2	0	0	0	0.027462	1	1252	1252		30.318	0	1	10695	+		46717	18417	38723	38745	50168	50168					0.17600155579270904
QRKKKRHRRML	11	Unmodified	_QRKKKRHRRML_					0	0	0			REV__nc|ENSG00000198739|Q86VH5-2|LRRTM3	REV__nc|ENSG00000198739|Q86VH5-2|LRRTM3	MULTI-MSMS	OvCa9_classI_Rep2	2	512.9844970703125	3	512.987922	1535.94194	-4.9038	-0.0025156	0.0010848	5.5647E-07	-4.9027	-0.002515	512.9879880478285	162.73	1.8375	162.51	160.84	162.68	-0.22697					96	36	4	0	0	0	0.72582	3	16522	16522;16562;16566		3.6191	0.21035	1	139950	+		46718	23056	38724	38746	50169;50170;50171	50169					0.19540252172646433
QRKKMQEI	8	Unmodified	_QRKKMQEI_					0	0	0		ENSG00000118193|ENST00000367350|KIF14;KIF14|p.L1267*|1|0.14|ENSG00000118193|chr1:200565529-200565533|TTAGG/-|frameshift_variant	ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	MULTI-MSMS	OvCa99_classI_Rep5	1	530.7987670898438	2	530.800226	1059.5859	-0.78515	-0.00041676	0.75888	0.00040282	-0.026263	-1.394E-05	530.8004526251557	28.366	0.34861	28.366	28.19	28.539	0					19	6	4	0	0	0	0.65062	1	916	916		53.351	0	1	551570			46719	3293	38725	38747	50172	50172					0.058488942110670905
QRKTPPVN	8	Unmodified	_QRKTPPVN_					0	0	0		ENSG00000109265|ENST00000682029|CRACD	ENSG00000109265|ENST00000682029|CRACD	ENSG00000109265|ENST00000682029|CRACD	MULTI-MSMS	OvCa9_classI_Rep3	3	470.27197265625	2	470.272158	938.529764	-3.0901	-0.0014532	3.1911	0.0015007	0.10101	4.7502E-05	470.2736065998923	146.16	1.8917	145.2	144.4	146.29	-0.95947					80	37	4	0	0	0	0.72896	1	12264	12264		37.159	3.6435	1	264540			46720	2705	38726	38748	50173	50173					0.05804009365908769
QRLDEDLLQ	9	Unmodified	_QRLDEDLLQ_					0	0	0			REV__ENSG00000171206|ENST00000643721|TRIM8	REV__ENSG00000171206|ENST00000643721|TRIM8	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.296142578125	2	565.296027	1128.5775	1.2652	0.0007152	-1.6596	-0.00093819	-0.39445	-0.00022298	565.2949666828802	61.05	1.2052	57.62	57.345	58.55	-3.43					61	24	3	0	0	0	0.2784	1	4173	4173		65.465	8.7443	1	794190	+		46721	21602	38727	38749	50174	50174					0.01835618775430703
QRLFQWRWWRV	11	Unmodified	_QRLFQWRWWRV_					0	0	0		L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|193|1|anti-sense	L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|193|1|anti-sense	L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|193|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.8777770996094	4	415.979747	1659.88988	0.48951	0.00020362	-0.71419	-0.00029709	-0.22469	-9.3466E-05	416.2295228252366	30.161	0.34709	30.161	30.036	30.383	0					9	6	2	0	0	0	0.026538	1	1139	1139		5.6988	5.3274	1	15542			46722	14783	38728	38750	50175	50175					0.08633412030508225
QRLGKILKL	9	Unmodified	_QRLGKILKL_					0	0	0		ENSG00000006459|ENST00000397560|KDM7A;ENST00000478996.1_1_7:139790896-139791898:-|nuORF;ENST00000472616.1_1_7:139790896-139796717:-|nuORF	ENSG00000006459|ENST00000397560|KDM7A	ENSG00000006459|ENST00000397560|KDM7A	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.8302001953125	2	534.866226	1067.7179	1.2221	0.00065367	1.6279	0.00087071	2.85	0.0015244	534.866866681996	103.2	0.24678	103.2	103.1	103.34	0					7	5	2	0	0	0	0.02741	1	11514	11514		60.972	0	1	226760			46723	878	38729	38751	50176	50176					0.18674867290314978
QRLHQNLI	8	Unmodified	_QRLHQNLI_					0	0	0			REV__ENSG00000140396|ENST00000452400|NCOA2	REV__ENSG00000140396|ENST00000452400|NCOA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.7815246582031	2	511.298707	1020.58286	1.0918	0.00055825	3.0817	0.0015757	4.1735	0.0021339	511.300114915409	154.6	0.70088	154.6	154.32	155.02	0					23	13	2	0	0	0	0.028476	1	18100	18100		42.474	0	1	62415	+		46724	19667	38730	38752	50177	50177					0.07339387148567766
QRLIKLKQVLD	11	Unmodified	_QRLIKLKQVLD_					0	0	0			REV__ENST00000582081.5_1_17:62541968-62590137:-|nuORF	REV__ENST00000582081.5_1_17:62541968-62590137:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	451.95660400390625	3	451.9574	1352.85037	0.37659	0.0001702	-2.7273	-0.0012326	-2.3507	-0.0010624	451.9561064679551	31.312	0.48687	31.312	31.171	31.658	0					25	9	4	0	0	0	0.72493	1	1278	1278		16.53	3.0219	1	256450	+		46725	17909	38731	38753	50178	50178					0.18805847236444606
QRLIKLKQVLD	11	Unmodified	_QRLIKLKQVLD_					0	0	0			REV__ENST00000582081.5_1_17:62541968-62590137:-|nuORF	REV__ENST00000582081.5_1_17:62541968-62590137:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	451.9574	1352.85037	0.37659	0.0001702	-2.7273	-0.0012326	-2.3507	-0.0010624	451.9561064679551	31.312	0.48687	31.312	31.171	31.658	0	0	0	NaN	16.53	25	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	256450	+		46726	17909	38731	38753							0.18805847236444606
QRLIKRAPF	9	Unmodified	_QRLIKRAPF_					0	0	0		nc|ENSG00000111224|Q9NR21-5|PARP11;nc|ENSG00000111224|Q9NR21-1|PARP11;ENSG00000111224|ENST00000228820|PARP11;nc|ENSG00000111224|Q9NR21-2|PARP11	nc|ENSG00000111224|Q9NR21-5|PARP11	nc|ENSG00000111224|Q9NR21-5|PARP11	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.3223266601562	2	564.85365	1127.69275	0.57325	0.0003238	-0.83557	-0.00047198	-0.26232	-0.00014817	564.8530812784198	57.769	0.83752	57.769	57.566	58.403	0					40	19	3	0	0	0	0.027448	1	4910	4910		44.117	21.537	1	549320			46727	2812	38732	38754	50179	50179					0.13400812487725489
QRLKCVAPIV	10	Unmodified	_QRLKCVAPIV_					0	0	0			REV__ENST00000270502.6_1_19:11040752-11040830:+|nuORF	REV__ENST00000270502.6_1_19:11040752-11040830:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	563.84228515625	2	563.841894	1125.66923	2.5863	0.0014583	-3.3758	-0.0019034	-0.78943	-0.00044511	563.8397356178584	95.66	0.75917	95.66	95.451	96.21	0					48	17	4	0	0	0	0.50656	1	10457	10457		53.351	8.9743	1	1542200	+		46728	24070	38733	38755	50180	50180					0.11142630658878261
QRLKCVAPIV	10	Unmodified	_QRLKCVAPIV_					0	0	0			REV__ENST00000270502.6_1_19:11040752-11040830:+|nuORF	REV__ENST00000270502.6_1_19:11040752-11040830:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	563.841894	1125.66923	2.5863	0.0014583	-3.3758	-0.0019034	-0.78943	-0.00044511	563.8397356178584	95.66	0.75917	95.66	95.451	96.21	0	-0.045273	0.00043236	NaN	53.351	48	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1542200	+		46729	24070	38733	38755							0.11142630658878261
QRLKCVAPIV	10	Unmodified	_QRLKCVAPIV_					0	0	0			REV__ENST00000270502.6_1_19:11040752-11040830:+|nuORF	REV__ENST00000270502.6_1_19:11040752-11040830:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	563.841894	1125.66923	-0.75315	-0.00042466	-2.7206	-0.001534	-3.4737	-0.0019586	563.8401932779184	97.543	2.0888	95.784	95.26	97.349	-1.7595	0.079174	0.0011712	NaN	53.351	100	40	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224080	+		46730	24070	38733	38755							0.11142630658878261
QRLKCVAPIV	10	Unmodified	_QRLKCVAPIV_					0	0	0			REV__ENST00000270502.6_1_19:11040752-11040830:+|nuORF	REV__ENST00000270502.6_1_19:11040752-11040830:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	563.841894	1125.66923	1.527	0.00086099	-4.8807	-0.0027519	-3.3537	-0.0018909	563.8389588811241	98.05	1.8398	95.671	95.267	97.106	-2.3786	-0.033901	-0.0012647	NaN	53.351	93	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210400	+		46731	24070	38733	38755							0.11142630658878261
QRLLPSEI	8	Unmodified	_QRLLPSEI_					0	0	0		ENST00000525006.1_1_11:65633330-65634797:+|nuORF	ENST00000525006.1_1_11:65633330-65634797:+|nuORF	ENST00000525006.1_1_11:65633330-65634797:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	478.2831726074219	2	478.282192	954.549831	-0.36164	-0.00017297	0.070446	3.3693E-05	-0.2912	-0.00013927	478.2821985086724	82.255	1.548	79.959	79.484	81.032	-2.2963					58	30	3	0	0	0	0.62474	1	4631	4631		58.782	4.0056	1	2863700			46732	13176	38734	38756	50181	50181					0.07073760305854648
QRLLQRPRP	9	Unmodified	_QRLLQRPRP_					0	0	0		ENSG00000167971|ENST00000343516|CASKIN1	ENSG00000167971|ENST00000343516|CASKIN1	ENSG00000167971|ENST00000343516|CASKIN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	582.3594970703125	2	582.359631	1162.70471	-1.3483	-0.00078517	3.343	0.0019468	1.9947	0.0011617	582.3615197468338	117.53	2.2585	116.19	115.42	117.68	-1.3444					117	42	5	0	0	0	0.55588	1	11049	11049		37.159	0.71236	1	861700			46733	6853	38735	38757	50182	50182					0.12986429230932117
QRLLSVLP	8	Unmodified	_QRLLSVLP_					0	0	0			REV__ENSG00000100116|ENST00000248924|GCAT	REV__ENSG00000100116|ENST00000248924|GCAT	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.2847900390625	2	463.295102	924.575651	-0.47638	-0.0002207	0.379	0.00017559	-0.097374	-4.5113E-05	463.2951945392015	94.792	0.68703	93.693	93.312	93.999	-1.0995					18	13	2	0	0	0	0.028476	1	8481	8481		55.504	5.4797	1	11477	+		46734	17369	38736	38758	50183	50183					0.11034654548143408
QRLLVLSK	8	Unmodified	_QRLLVLSK_					0	0	0		nc|ENSG00000089250|P29475-2|NOS1;ENSG00000089250|ENST00000317775|NOS1;nc|ENSG00000089250|P29475-5|NOS1;nc|ENSG00000089250|P29475-3|NOS1	nc|ENSG00000089250|P29475-2|NOS1	nc|ENSG00000089250|P29475-2|NOS1	MULTI-MSMS	OvCa9_classI_Rep3	3	478.8161315917969	2	478.816202	955.617851	1.0861	0.00052004	-1.1013	-0.00052731	-0.015197	-7.2768E-06	478.81554679630005	69.339	1.3951	66.524	66.312	67.707	-2.8143					70	27	4	0	0	0	0.42405	1	3093	3093		85.161	5.4482	1	309060			46735	1818	38737	38759	50184	50184					0.13826629956520264
QRLLVLSK	8	Unmodified	_QRLLVLSK_					0	0	0		nc|ENSG00000089250|P29475-2|NOS1;ENSG00000089250|ENST00000317775|NOS1;nc|ENSG00000089250|P29475-5|NOS1;nc|ENSG00000089250|P29475-3|NOS1	nc|ENSG00000089250|P29475-2|NOS1	nc|ENSG00000089250|P29475-2|NOS1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	478.816202	955.617851	-0.73023	-0.00034964	0.3434	0.00016442	-0.38683	-0.00018522	478.8162371288215	69.264	1.248	66.644	66.366	67.614	-2.6203	0.059678	0.00072781	NaN	85.161	52	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174700			46736	1818	38737	38759							0.13826629956520264
QRLRKRIEG	9	Unmodified	_QRLRKRIEG_					0	0	0		ENST00000494005.1_1_3:49737934-49739366:+|nuORF	ENST00000494005.1_1_3:49737934-49739366:+|nuORF	ENST00000494005.1_1_3:49737934-49739366:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.848388671875	2	578.357088	1154.69962	-1.0862	-0.00062824	-1.1068	-0.0006401	-2.193	-0.0012683	578.3574862394553	28.415	0.3982	28.415	28.24	28.638	0					10	7	2	0	0	0	0.027462	1	917	917		31.53	13.268	1	164510			46737	12748	38738	38760	50185	50185					0.1284612536833265
QRLSQGGRVL	10	Unmodified	_QRLSQGGRVL_					0	0	0		ENST00000590940.5_1_19:10229208-10229560:-|nuORF	ENST00000590940.5_1_19:10229208-10229560:-|nuORF	ENST00000590940.5_1_19:10229208-10229560:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.8283081054688	2	557.327996	1112.64144	1.1522	0.00064217	-2.0961	-0.0011682	-0.94389	-0.00052605	557.328393946559	109.81	1.5797	108.21	107.8	109.38	-1.6011					74	29	3	0	0	0	0.55359	1	10090	10090		47.657	3.2801	1	372990			46738	14113	38739	38761	50186	50186					0.08962443723044089
QRLVSVQK	8	Unmodified	_QRLVSVQK_					0	0	0			REV__nc|ENSG00000185963|Q8TD16|BICD2	REV__nc|ENSG00000185963|Q8TD16|BICD2	MULTI-MSMS	OvCa9_classI_Rep2	2	479.2960510253906	2	479.295633	956.576714	1.1526	0.00055244	-1.4132	-0.00067734	-0.2606	-0.0001249	479.29464928624355	29.301	0.75868	26.591	26.259	27.017	-2.7097					21	15	2	0	0	0	0.71267	1	687	687		40.778	0.20554	1	21092	+		46739	15701	38740	38762	50187	50187					0.09668868917037798
QRMLVVLL	8	Unmodified	_QRMLVVLL_					0	0	0		ENSG00000164111|ENST00000296511|ANXA5	ENSG00000164111|ENST00000296511|ANXA5	ENSG00000164111|ENST00000296511|ANXA5	MULTI-MSMS	OvCa9_classI_Rep2	2	486.3045959472656	2	486.307155	970.599758	-1.0237	-0.00049782	-2.7767	-0.0013503	-3.8003	-0.0018481	486.3057082440577	120.4	1.6293	120.23	119.94	121.57	-0.17138					88	32	4	0	0	0	0.7043	1	11645	11645		42.474	1.9018	1	594410			46740	6410	38741	38763	50188	50188					0.11328171710158585
QRNGQHLPD	9	Unmodified	_QRNGQHLPD_					0	0	0		nc|ENSG00000127870|Q9Y252-2|RNF6;ENSG00000127870|ENST00000381588|RNF6	nc|ENSG00000127870|Q9Y252-2|RNF6	nc|ENSG00000127870|Q9Y252-2|RNF6	MULTI-MSMS	OvCa9_classI_Rep2	2	532.7633666992188	2	532.765229	1063.5159	-2.5391	-0.0013527	-1.5501	-0.00082583	-4.0892	-0.0021786	532.7645469241053	118.72	1.6329	118.57	117.94	119.57	-0.14755					101	32	5	0	0	0	0.53957	1	11440	11440		38.806	3.6054	1	241770			46741	3850	38742	38764	50189	50189					-0.01331268133208141
QRPPTIVL	8	Unmodified	_QRPPTIVL_					0	0	0		nc|ENSG00000131263|Q9NVW2-2|RLIM;ENSG00000131263|ENST00000332687|RLIM	nc|ENSG00000131263|Q9NVW2-2|RLIM	nc|ENSG00000131263|Q9NVW2-2|RLIM	MULTI-MSMS	OvCa9_classI_Rep2	2	462.28741455078125	2	462.287277	922.560001	-1.6663	-0.0007703	0.90288	0.00041739	-0.7634	-0.00035291	462.28766330557994	85.301	1.5459	83.81	83.357	84.903	-1.4906					91	30	4	0	0	0	0.30448	6	7366	7362;7366;7372;7384;7391;7397		106.42	15.852	1	1328200			46742	4052	38743	38765	50190;50191;50192;50193;50194;50195	50191					0.09562368031083679
QRPPTIVL	8	Unmodified	_QRPPTIVL_					0	0	0		nc|ENSG00000131263|Q9NVW2-2|RLIM;ENSG00000131263|ENST00000332687|RLIM	nc|ENSG00000131263|Q9NVW2-2|RLIM	nc|ENSG00000131263|Q9NVW2-2|RLIM	MULTI-MSMS	OvCa9_classI_Rep3	3	462.28839111328125	2	462.287277	922.560001	-1.1628	-0.00053756	0.69157	0.00031971	-0.47125	-0.00021785	462.2875389859225	85.812	1.6052	83.592	83.235	84.84	-2.2204					92	31	4	0	0	0	0.33245	8	5056	5056;5062;5068;5075;5081;5088;5101;5108		101.21	13.457	1	2379500			46743	4052	38743	38765	50196;50197;50198;50199;50200;50201;50202;50203	50196					0.09562368031083679
QRPPTIVL	8	Unmodified	_QRPPTIVL_					0	0	0		nc|ENSG00000131263|Q9NVW2-2|RLIM;ENSG00000131263|ENST00000332687|RLIM	nc|ENSG00000131263|Q9NVW2-2|RLIM	nc|ENSG00000131263|Q9NVW2-2|RLIM	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.28912353515625	2	462.287277	922.560001	0.073355	3.3911E-05	1.3471	0.00062276	1.4205	0.00065667	462.28873808578413	86.463	2.5937	83.836	83.061	85.655	-2.6269					109	51	5	0	0	0	0.39692	2	7302	7302;7326		88.643	6.3378	1	2207600			46744	4052	38743	38765	50204;50205	50204					0.09562368031083679
QRPRSQKKFFF	11	Unmodified	_QRPRSQKKFFF_					0	0	0		ENST00000372398.5_1_9:132995959-132996133:+|nuORF	ENST00000372398.5_1_9:132995959-132996133:+|nuORF	ENST00000372398.5_1_9:132995959-132996133:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.7711486816406	3	490.277244	1467.8099	1.1047	0.00054159	-0.67419	-0.00033054	0.43047	0.00021105	490.2772796027161	98.294	0.55974	98.294	98.079	98.638	0					17	12	2	0	0	0	0.026068	1	10831	10831		21.78	0	1	259410			46745	10978	38744	38766	50206	50206					0.0947092563667411
QRQAQSEKL	9	Unmodified	_QRQAQSEKL_					0	0	0			REV__ENSG00000081052|ENST00000396625|COL4A4	REV__ENSG00000081052|ENST00000396625|COL4A4	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.3018188476562	2	544.296362	1086.57817	0.67225	0.0003659	1.3877	0.00075532	2.0599	0.0011212	544.2969359767418	84.93	1.4506	82.284	81.792	83.243	-2.6463					63	29	3	0	0	0	0.35444	1	7125	7125		56.721	0.28726	1	205510	+		46746	17065	38745	38767	50207	50207					0.038344582151466966
QRQQHRRPRRR	11	Unmodified	_QRQQHRRPRRR_					0	0	0			REV__ENST00000296564.8_2_5:5422898-5422991:+|nuORF	REV__ENST00000296564.8_2_5:5422898-5422991:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	525.3094482421875	3	525.308823	1572.90464	-0.67522	-0.0003547	3.6942	0.0019406	3.019	0.0015859	525.3106099633284	24.052	0.44472	24.052	23.793	24.237	0					27	8	5	0	0	0	0.72548	1	415	415		9.2118	4.0694	1	151980	+		46747	24203	38746	38768	50208	50208					0.1411029695123034
QRRANKQA	8	Unmodified	_QRRANKQA_					0	0	0			REV__ENSG00000175311|ENST00000311620|ANKS4B	REV__ENSG00000175311|ENST00000311620|ANKS4B	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.2391052246094	2	486.278306	970.54206	-0.14015	-6.8154E-05	3.136	0.001525	2.9958	0.0014568	486.27966427893216	51.267	0.64302	51.267	50.775	51.418	0					24	14	3	0	0	0	0.028476	1	3937	3937		44.531	0	1	1160300	+		46748	21891	38747	38769	50209	50209					0.055610458289379494
QRRELVQV	8	Unmodified	_QRRELVQV_					0	0	0		nc|ENSG00000130589|Q9BYK8-2|HELZ2;ENSG00000130589|ENST00000467148|HELZ2;nc|ENSG00000130589|Q9BYK8|HELZ2	nc|ENSG00000130589|Q9BYK8-2|HELZ2	nc|ENSG00000130589|Q9BYK8-2|HELZ2	MULTI-MSMS	OvCa99_classI_Rep5	1	514.3047485351562	2	514.30399	1026.59343	-0.19961	-0.00010266	-0.17174	-8.8326E-05	-0.37135	-0.00019099	514.303807565639	52.935	0.86666	52.935	52.697	53.564	0					46	19	4	0	0	0	0.73205	1	4168	4168		35.618	0	1	8222700			46749	3995	38748	38770	50210	50210					0.08119369803011978
QRRHYRIG	8	Unmodified	_QRRHYRIG_					0	0	0		ENSG00000124313|ENST00000642864|IQSEC2;nc|ENSG00000124313|Q5JU85-3|IQSEC2	ENSG00000124313|ENST00000642864|IQSEC2	ENSG00000124313|ENST00000642864|IQSEC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.2620849609375	2	543.307398	1084.60024	1.3141	0.00071398	4.441	0.0024128	5.7551	0.0031268	543.8118960856918	149.55	0.30145	149.55	149.44	149.75	0					6	5	2	0	0	0	0.028476	1	17528	17528		20.482	7.5226	1	11385			46750	3646	38749	38771	50211	50211					0.06132727474209787
QRRKELLSEE	10	Unmodified	_QRRKELLSEE_					0	0	0			REV__nc|ENSG00000136824|O95347-2|SMC2	REV__nc|ENSG00000136824|O95347-2|SMC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	644.3502807617188	2	644.354408	1286.69426	-4.6999	-0.0030284	-2.6752	-0.0017238	-7.375	-0.0047521	644.3525813109911	156.61	0.94965	155.07	154.76	155.71	-1.545					72	28	3	0	0	0	0.76627	1	15511	15511		23.042	1.0826	1	115240	+		46751	19406	38750	38772	50212	50212					0.06238356995186223
QRRKFLQMKRR	11	Unmodified	_QRRKFLQMKRR_					0	0	0		ENSG00000095596|ENST00000224356|CYP26A1	ENSG00000095596|ENST00000224356|CYP26A1	ENSG00000095596|ENST00000224356|CYP26A1	MULTI-MSMS	OvCa9_classI_Rep3	3	516.3090209960938	3	516.312294	1545.91505	-6.1959	-0.003199	1.3885	0.0007169	-4.8074	-0.0024821	516.3131116708117	162.19	3.1861	160.82	159.18	162.36	-1.3692					191	67	4	0	0	0	0.72582	1	14131	14131		3.6191	2.0961	1	59102			46752	1934	38751	38773	50213	50213					0.16393143561435863
QRRKLEQQMA	10	Unmodified	_QRRKLEQQMA_					0	0	0		ENSG00000130307|ENST00000252597|USHBP1	ENSG00000130307|ENST00000252597|USHBP1	ENSG00000130307|ENST00000252597|USHBP1	MULTI-MSMS	OvCa9_classI_Rep3	3	644.3495483398438	2	644.351145	1286.68774	-6.1065	-0.0039348	3.9929	0.0025728	-2.1137	-0.0013619	644.3535517231257	156.22	1.1461	155.15	154.82	155.96	-1.073					70	25	4	0	0	0	0.67931	1	13437	13437		32.812	4.9302	1	162170			46753	3977	38752	38774	50214	50214					0.05586140562809305
QRRKNRANLD	10	Unmodified	_QRRKNRANLD_					0	0	0			REV__ENSG00000101752|ENST00000261537|MIB1	REV__ENSG00000101752|ENST00000261537|MIB1	MULTI-MSMS	OvCa99_classI_Rep5	1	635.8583984375	2	635.857983	1269.70141	-0.080261	-5.1035E-05	0.31476	0.00020014	0.2345	0.00014911	635.8580894362975	24.135	0.49908	24.135	23.937	24.436	0					24	9	4	0	0	0	0.66721	1	412	412		34.173	2.6427	1	106210	+		46754	17517	38753	38775	50215	50215					0.07735134386280151
QRRKPTFLTRR	11	Unmodified	_QRRKPTFLTRR_					0	0	0		ENSG00000186767|ENST00000374884|SPIN4	ENSG00000186767|ENST00000374884|SPIN4	ENSG00000186767|ENST00000374884|SPIN4	MULTI-MSMS	OvCa9_classI_Rep3	3	487.29034423828125	3	486.963659	1457.86915	-6.9542	-0.0033864	-2.5955	-0.0012639	-9.5496	-0.0046503	486.9622029105925	158.45	2.296	157.18	156.33	158.63	-1.267					151	56	3	0	0	0	0.72524	1	13697	13697		12.433	2.7867	1	50747			46755	8360	38754	38776	50216	50216					0.1585282165085573
QRRPRPRRPQR	11	Unmodified	_QRRPRPRRPQR_					0	0	0		ENST00000583776.1_1_18:2906615-2908961:+|nuORF	ENST00000583776.1_1_18:2906615-2908961:+|nuORF	ENST00000583776.1_1_18:2906615-2908961:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	501.63226318359375	3	501.638169	1501.89268	-5.5139	-0.002766	-2.6471	-0.0013279	-8.161	-0.0040939	501.63686894791874	162.29	1.9089	162.06	160.59	162.5	-0.22696					90	37	3	0	0	0	0.72575	1	16459	16459		5.6988	0	1	106580			46756	14014	38755	38777	50217	50217					0.16180680208071863
QRRQRHRKT	9	Unmodified	_QRRQRHRKT_					0	0	0		ENSG00000066422|ENST00000312938|ZBTB11	ENSG00000066422|ENST00000312938|ZBTB11	ENSG00000066422|ENST00000312938|ZBTB11	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3665161132812	2	633.374135	1264.73372	-4.8823	-0.0030923	-2.7599	-0.0017481	-7.6422	-0.0048404	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.71475	1	13324	13324		12.959	0	1	765700			46757	1351	38756	38778	50218	50218					0.1119396657991274
QRRRAVGL	8	Unmodified	_QRRRAVGL_					0	0	0		ENSG00000182162|ENST00000381297|P2RY8	ENSG00000182162|ENST00000381297|P2RY8	ENSG00000182162|ENST00000381297|P2RY8	MULTI-MSMS	OvCa99_classI_Rep5	1	478.3009033203125	2	478.299042	954.583531	1.6613	0.0007946	3.315	0.0015856	4.9763	0.0023802	478.3004731916248	119.84	0.62885	119.84	119.56	120.18	0					33	14	3	0	0	0	0.7043	1	13784	13784		42.474	1.9018	1	883470			46758	7975	38757	38779	50219	50219					0.10442226588270387
QRRRQLRSAP	10	Unmodified	_QRRRQLRSAP_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MSMS	OvCa99_classI_Rep5	1	634.3779907226562	2	634.376343	1266.73813	0.70959	0.00045014	1.3047	0.00082769	2.0143	0.0012778	634.3769097150116	164.24	2.8363	164.24	163	165.84	0					295	106	3	0	0	0	0.71192	1	19126	19126		29.15	2.4566	1	532610			46759	4651	38758	38780	50220	50220					0.11543431002837679
QRRRQRLLRQG	11	Unmodified	_QRRRQRLLRQG_					0	0	0			REV__ENSG00000138061|ENST00000610745|CYP1B1	REV__ENSG00000138061|ENST00000610745|CYP1B1	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.3384094238281	3	489.634424	1465.88144	1.6331	0.00079961	-3.0387	-0.0014879	-1.4056	-0.00068825	489.9670533804353	126.27	0.70101	126.27	125.95	126.65	0					32	14	3	0	0	0	0.026461	1	14583	14583		8.7993	0	1	101130	+		46760	19504	38759	38781	50221	50221					0.16713858113917013
QRRRQWRQWRL	11	Unmodified	_QRRRQWRQWRL_					0	0	0			REV__TMC8|p.F281Sfs*127|1|0.3|ENSG00000167895|chr17:78134418-78134419|-/C|frameshift_variant	REV__TMC8|p.F281Sfs*127|1|0.3|ENSG00000167895|chr17:78134418-78134419|-/C|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	556.3043212890625	3	556.985457	1667.93454	0.53417	0.00029753	0.51237	0.00028538	1.0465	0.00058291	556.9857033711276	76.185	0.42749	73.246	72.985	73.412	-2.9389					15	8	2	0	0	0	0.026505	1	6014	6014		9.2118	8.8713	1	40135	+		46761	21316	38760	38782	50222	50222					0.12729235896586033
QRRSLLQSK	9	Unmodified	_QRRSLLQSK_					0	0	0		ENST00000473613.5_1_22:39795807-39810908:+|nuORF	ENST00000473613.5_1_22:39795807-39810908:+|nuORF	ENST00000473613.5_1_22:39795807-39810908:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.3358154296875	2	558.335821	1114.65709	1.418	0.00079173	-1.51	-0.00084309	-0.091988	-5.136E-05	558.3348203882426	32.25	1.185	29.555	28.968	30.153	-2.6954					65	35	2	0	0	0	0.70914	1	738	738		14.865	3.3539	1	36609			46762	12413	38761	38783	50223	50223					0.1043473024008108
QRRVPGLAP	9	Unmodified	_QRRVPGLAP_					0	0	0			REV__ENST00000318249.9_1_1:21771676-21795261:+|nuORF	REV__ENST00000318249.9_1_1:21771676-21795261:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	497.3010559082031	2	497.30125	992.587947	0.2	9.9459E-05	2.6096	0.0012977	2.8096	0.0013972	497.30242744427414	130.35	0.84021	129.24	128.98	129.82	-1.1121					38	16	3	0	0	0	0.59983	1	10346	10346		31.955	5.2619	1	31795	+		46763	24423	38762	38784	50224	50224					0.0913569101118128
QRSEPRCVR	9	Unmodified	_QRSEPRCVR_					0	0	0			REV__nc|ENSG00000186493|Q86SI9-2|IRX2-DT	REV__nc|ENSG00000186493|Q86SI9-2|IRX2-DT	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.7996215820312	2	565.796006	1129.57746	1.809	0.0010235	3.3987	0.001923	5.2077	0.0029465	565.797875989122	35.334	1.099	32.485	32.19	33.288	-2.849					50	21	4	0	0	0	0.5811	1	1156	1156		34.173	5.023	1	223240	+		46764	29055	38763	38785	50225	50225					0.017853402944410846
QRSFGKVLISL	11	Unmodified	_QRSFGKVLISL_					0	0	0			REV__ENST00000561691.5_1_15:43691337-43697409:+|nuORF	REV__ENST00000561691.5_1_15:43691337-43697409:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	624.3797607421875	2	624.377155	1246.73976	0.05137	3.2074E-05	4.182	0.0026111	4.2334	0.0026432	624.3798691572971	142.8	0.58368	141.36	141.1	141.68	-1.4427					18	11	2	0	0	0	0.68757	1	13988	13988		33.922	8.3476	1	22564	+		46765	19484	38764	38786	50226	50226					0.12625627248257842
QRSFGKVLISL	11	Unmodified	_QRSFGKVLISL_					0	0	0			REV__ENST00000561691.5_1_15:43691337-43697409:+|nuORF	REV__ENST00000561691.5_1_15:43691337-43697409:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	624.377155	1246.73976	-1.7442	-0.001089	5.7413	0.0035847	3.9971	0.0024957	624.3807887834206	142.32	0.54648	141.3	141.03	141.58	-1.0106	-0.027284	0.0016573	NaN	33.922	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15349	+		46766	19484	38764	38786							0.12625627248257842
QRSFGKVLISL	11	Unmodified	_QRSFGKVLISL_					0	0	0			REV__ENST00000561691.5_1_15:43691337-43697409:+|nuORF	REV__ENST00000561691.5_1_15:43691337-43697409:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	624.377155	1246.73976	0.05137	3.2074E-05	4.182	0.0026111	4.2334	0.0026432	624.3798691572971	142.8	0.58368	141.36	141.1	141.68	-1.4427	0.027284	-0.00028982	NaN	33.922	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22564	+		46767	19484	38764	38786							0.12625627248257842
QRSIPISPLS	10	Unmodified	_QRSIPISPLS_					0	0	0			REV__ENSG00000189350|ENST00000379558|TOGARAM2	REV__ENSG00000189350|ENST00000379558|TOGARAM2	MULTI-SECPEP	OvCa9_classI_Rep2	2	550.2788696289062	2	549.319306	1096.62406	-0.07434	-4.0836E-05	2.7211	0.0014948	2.6468	0.0014539	549.3204888718022	94.239	0.70809	93.139	92.801	93.509	-1.0995					28	13	3	0	0	0	0.026782	1	8448	8448		30.318	0	1	72945	+		46768	22773	38765	38787	50227	50227					0.07961103397406077
QRSLSSPSL	9	Unmodified	_QRSLSSPSL_					0	0	0		ENSG00000283434|ENST00000637986|CSNKA2IP	ENSG00000283434|ENST00000637986|CSNKA2IP	ENSG00000283434|ENST00000637986|CSNKA2IP	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.76824951171875	2	487.766906	973.519259	0.41329	0.00020159	-0.51697	-0.00025216	-0.10369	-5.0575E-05	487.76651967759864	64.704	1.6989	61.219	60.724	62.423	-3.4854					53	34	3	0	0	0	0.094616	1	4623	4623		98.629	16.389	1	977280			46769	9614	38766	38788	50228	50228					0.03143981920800343
QRSPGGILQL	10	Unmodified	_QRSPGGILQL_					0	0	0			REV__tr|A0A553ST71|A0A553ST71_NIACIOPTfamilyoligopeptidetransporterOS=NialliacirculansOX=1397GN=CEQ21_04365PE=4SV=1	REV__tr|A0A553ST71|A0A553ST71_NIACIOPTfamilyoligopeptidetransporterOS=NialliacirculansOX=1397GN=CEQ21_04365PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	534.8106689453125	2	534.811648	1067.60874	0.086004	4.5996E-05	-0.75568	-0.00040415	-0.66967	-0.00035815	534.8111784323548	91.527	2.091	90.291	89.795	91.886	-1.2355					103	38	4	0	0	0	0.32141	1	8134	8134		78.264	8.6362	1	1349900	+		46770	30923	38767	38789	50229	50229					0.07764236600201002
QRSPGGILQL	10	Unmodified	_QRSPGGILQL_					0	0	0			REV__tr|A0A553ST71|A0A553ST71_NIACIOPTfamilyoligopeptidetransporterOS=NialliacirculansOX=1397GN=CEQ21_04365PE=4SV=1	REV__tr|A0A553ST71|A0A553ST71_NIACIOPTfamilyoligopeptidetransporterOS=NialliacirculansOX=1397GN=CEQ21_04365PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	534.8115844726562	2	534.811648	1067.60874	-0.41858	-0.00022386	-1.4796	-0.00079128	-1.8981	-0.0010151	534.8107466727284	92.27	1.7258	90.246	89.839	91.565	-2.0241					96	35	4	0	0	0	0.12738	2	5837	5831;5837		106.68	2.8904	1	2468600	+		46771	30923	38767	38789	50230;50231	50231					0.07764236600201002
QRSPGGILQL	10	Unmodified	_QRSPGGILQL_					0	0	0			REV__tr|A0A553ST71|A0A553ST71_NIACIOPTfamilyoligopeptidetransporterOS=NialliacirculansOX=1397GN=CEQ21_04365PE=4SV=1	REV__tr|A0A553ST71|A0A553ST71_NIACIOPTfamilyoligopeptidetransporterOS=NialliacirculansOX=1397GN=CEQ21_04365PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.8118896484375	2	534.811648	1067.60874	-1.804	-0.0009648	0.81471	0.00043572	-0.98929	-0.00052909	534.8120810621485	92.846	1.3887	90.339	89.959	91.348	-2.5072					76	28	4	0	0	0	0.17251	2	8113	8065;8113		98.582	5.4388	1	2073700	+		46772	30923	38767	38789	50232;50233	50233					0.07764236600201002
QRSSNLALL	9	Unmodified	_QRSSNLALL_					0	0	0		ENST00000520248.1_1_8:79672379-79672541:-|nuORF;ENSG00000137492|ENST00000260045|THAP12	ENST00000520248.1_1_8:79672379-79672541:-|nuORF	ENST00000520248.1_1_8:79672379-79672541:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	501.28948974609375	2	501.290548	1000.56654	-1.4695	-0.00073667	1.3149	0.00065914	-0.15466	-7.7529E-05	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.62352	1	10978	10978		29.15	1.0681	1	97838			46773	4589	38768	38790	50234	50234					0.06628261191792717
QRSWRLNER	9	Unmodified	_QRSWRLNER_					0	0	0		tr|A0A7D6ZZP3|A0A7D6ZZP3_9CLOT2,3-bisphosphoglycerate-dependentphosphoglyceratemutaseOS=ClostridiumintestinaleOX=36845GN=gpmAPE=3SV=1	tr|A0A7D6ZZP3|A0A7D6ZZP3_9CLOT2,3-bisphosphoglycerate-dependentphosphoglyceratemutaseOS=ClostridiumintestinaleOX=36845GN=gpmAPE=3SV=1	tr|A0A7D6ZZP3|A0A7D6ZZP3_9CLOT2,3-bisphosphoglycerate-dependentphosphoglyceratemutaseOS=ClostridiumintestinaleOX=36845GN=gpmAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.92236328125	3	415.55841	1243.6534	0.38696	0.0001608	-1.2453	-0.0005175	-0.85835	-0.00035669	415.5577977343021	40.764	0.3556	40.764	40.526	40.881	0					17	7	3	0	0	0	0.027462	1	2479	2479		35.152	19.819	1	129700			46774	35970	38769	38791	50235	50235					0.04132060466213261
QRTGLMGFQL	10	Oxidation (M)	_QRTGLM(Oxidation (M))GFQL_		QRTGLM(1)GFQL		QRTGLM(60)GFQL	0	0	1			REV__ENST00000427025.6_2_6:138893369-138893522:-|nuORF	REV__ENST00000427025.6_2_6:138893369-138893522:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	584.2951049804688	2	583.802965	1165.59138	1.4406	0.000841	-0.011885	-6.9385E-06	1.4287	0.00083406	584.3042031244634	135.12	0.5466	135.12	134.81	135.36	0					16	11	2	0	0	0	0.45822	1	15740	15740		60.118	14.146	1	319670	+		46775	25673	38770	38792	50236	50236		577			0.015205730028583275
QRTKTDVYILN	11	Unmodified	_QRTKTDVYILN_					0	0	0		ACKR4|p.V246Cfs*12|1|0.05|ENSG00000129048|chr3:132601132-132601133|-/T|frameshift_variant;ENSG00000129048|ENST00000249887|ACKR4	ACKR4|p.V246Cfs*12|1|0.05|ENSG00000129048|chr3:132601132-132601133|-/T|frameshift_variant	ACKR4|p.V246Cfs*12|1|0.05|ENSG00000129048|chr3:132601132-132601133|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	450.2378845214844	3	450.917381	1349.73031	1.1335	0.00051109	-3.1292	-0.001411	-1.9957	-0.0008999	450.91597854488305	38.718	0.98921	36.008	35.667	36.657	-2.7097					29	19	2	0	0	0	0.026277	1	1879	1879		17.833	0	1	31888			46776	18	38771	38793	50237	50237					0.06943814172063867
QRTLYCPRGV	10	Unmodified	_QRTLYCPRGV_					0	0	0			REV__ENST00000490728.5_1_2:131799319-131803759:+|nuORF	REV__ENST00000490728.5_1_2:131799319-131803759:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	596.81591796875	2	596.816407	1191.61826	3.1335	0.0018701	-3.2653	-0.0019488	-0.13181	-7.8668E-05	596.8143723057162	57.305	2.9299	54.154	53.228	56.158	-3.1504					108	83	2	0	0	0	0.83261	1	1674	1674		14.865	0.72775	1	40554	+		46777	19347	38772	38794	50238	50238					0.030116816140207447
QRTSRKVRKL	10	Unmodified	_QRTSRKVRKL_					0	0	0		ENSG00000255587|ENST00000612677|RAB44	ENSG00000255587|ENST00000612677|RAB44	ENSG00000255587|ENST00000612677|RAB44	MULTI-MSMS	OvCa9_classI_Rep2	2	636.3975219726562	2	636.40457	1270.79459	-5.7407	-0.0036534	-4.054	-0.00258	-9.7947	-0.0062334	636.4018984737235	158.9	0.87512	158.67	158.43	159.3	-0.22696					33	16	3	0	0	0	0.79213	1	16156	16156		19.997	4.355	1	52250			46778	9459	38773	38795	50239	50239					0.17002058839511847
QRVGPPACGRL	11	Unmodified	_QRVGPPACGRL_					0	0	0		ENST00000264735.2_1_3:192958984-192973464:+|nuORF	ENST00000264735.2_1_3:192958984-192973464:+|nuORF	ENST00000264735.2_1_3:192958984-192973464:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	577.3173217773438	2	577.316574	1152.6186	-0.68239	-0.00039396	4.1594	0.0024013	3.477	0.0020073	577.3187428290421	55.823	0.66137	55.823	55.599	56.261	0					37	15	3	0	0	0	0.3578	1	4604	4604		64.207	0.901	1	968390			46779	9937	38774	38796	50240	50240					0.048391013339141864
QRVLDQVRR	9	Unmodified	_QRVLDQVRR_					0	0	0			REV__nc|ENSG00000160949|Q96HA7-2|TONSL	REV__nc|ENSG00000160949|Q96HA7-2|TONSL	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.3267822265625	2	585.34672	1168.67889	-1.3446	-0.00078705	3.4929	0.0020445	2.1483	0.0012575	585.3487881227439	64.16	0.32296	64.16	64.011	64.334	0					13	7	2	0	0	0	0.027447	1	5833	5833		39.253	0	1	285700	+		46780	20681	38775	38797	50241	50241					0.10129534988641353
QRVLPPRKSR	10	Unmodified	_QRVLPPRKSR_					0	0	0			REV__ENSG00000164620|ENST00000297164|RELL2	REV__ENSG00000164620|ENST00000297164|RELL2	MULTI-MSMS	OvCa9_classI_Rep3	3	412.9266052246094	3	412.926434	1235.75747	3.0705	0.0012679	-1.7659	-0.00072917	1.3046	0.00053872	412.9250835867229	57.228	1.0137	54.078	53.461	54.475	-3.1504					42	32	2	0	0	0	0.83396	1	1647	1647		14.694	4.1069	1	24423	+		46781	21004	38776	38798	50242	50242					0.1490238729372777
QRVVLFATV	9	Unmodified	_QRVVLFATV_					0	0	0			REV__FANCA|p.E886Rfs*3|1|0.09|ENSG00000187741|chr16:89765012-89765012|C/-|frameshift_variant	REV__FANCA|p.E886Rfs*3|1|0.09|ENSG00000187741|chr16:89765012-89765012|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	516.8152465820312	2	516.813659	1031.61277	-0.91594	-0.00047337	3.9174	0.0020246	3.0015	0.0015512	516.8155240731883	28.716	1.0966	28.716	28.439	29.536	0					49	21	3	0	0	0	0.56889	1	959	959		35.618	1.4457	1	606140	+		46782	22659	38777	38799	50243	50243					0.09822326093899392
QRWLPRGH	8	Unmodified	_QRWLPRGH_					0	0	0		chr1:25805275-25809026|185|25.12|0.28|6.49|+|2|SELENON,SELENON|1	chr1:25805275-25809026|185|25.12|0.28|6.49|+|2|SELENON,SELENON|1	chr1:25805275-25809026|185|25.12|0.28|6.49|+|2|SELENON,SELENON|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.3057250976562	2	525.291217	1048.56788	-0.22289	-0.00011708	-1.306	-0.00068602	-1.5289	-0.0008031	525.7928495823028	32.643	0.19679	32.643	32.503	32.7	0					5	3	2	0	0	0	0.028476	1	1439	1439		20.482	1.3783	1	8220.3			46783	253	38778	38800	50244	50244					0.045539400712414135
QRWPGPVKPL	10	Unmodified	_QRWPGPVKPL_					0	0	0			REV__ENST00000371100.8_1_20:57427796-57428033:+|nuORF	REV__ENST00000371100.8_1_20:57427796-57428033:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3432006835938	2	589.345658	1176.67676	-5.1334	-0.0030254	0.48454	0.00028556	-4.6489	-0.0027398	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.67931	1	12576	12576		32.812	0	1	589610	+		46784	24976	38779	38801	50245	50245					0.09549106250869954
QRWYRHQVQRR	11	Unmodified	_QRWYRHQVQRR_					0	0	0		nc|ENSG00000141577|Q9UPN4-3|CEP131;ENSG00000141577|ENST00000450824|CEP131;nc|ENSG00000141577|Q9UPN4|CEP131	nc|ENSG00000141577|Q9UPN4-3|CEP131	nc|ENSG00000141577|Q9UPN4-3|CEP131	MULTI-SECPEP	OvCa9_classI_Rep2	2	538.8261108398438	3	538.294179	1611.86071	0.30372	0.00016349	-2.4769	-0.0013333	-2.1732	-0.0011698	538.2928279864958	91.452	1.2661	90.216	89.954	91.22	-1.2355					67	23	5	0	0	0	0.026113	1	8151	8151		24.232	10.146	1	465450			46785	4929	38780	38802	50246	50246					0.07925267734231056
QRWYRHQVQRR	11	Unmodified	_QRWYRHQVQRR_					0	0	0		nc|ENSG00000141577|Q9UPN4-3|CEP131;ENSG00000141577|ENST00000450824|CEP131;nc|ENSG00000141577|Q9UPN4|CEP131	nc|ENSG00000141577|Q9UPN4-3|CEP131	nc|ENSG00000141577|Q9UPN4-3|CEP131	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.295654296875	3	538.294179	1611.86071	-1.6796	-0.00090413	-0.58442	-0.00031459	-2.264	-0.0012187	538.2937781671523	92.666	1.151	90.158	89.908	91.059	-2.5072					75	22	5	0	0	0	0.72548	1	8056	8056		9.2118	2.8909	1	472240			46786	4929	38780	38802	50247	50247					0.07925267734231056
QRYSKRVYI	9	Unmodified	_QRYSKRVYI_					0	0	0		ENST00000436236.1_1_3:31638325-31661336:+|nuORF;ENST00000453168.5_1_3:31574490-31661308:+|nuORF;ENST00000423527.5_1_3:31574490-31661461:+|nuORF;ENSG00000163527|ENST00000295770|STT3B	ENST00000436236.1_1_3:31638325-31661336:+|nuORF	ENST00000436236.1_1_3:31638325-31661336:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	606.8462524414062	2	606.846022	1211.67749	-0.090048	-5.4645E-05	0.10671	6.4757E-05	0.016662	1.0111E-05	606.8459428499569	40.741	0.62357	40.741	40.526	41.149	0					32	13	3	0	0	0	0.2077	1	2492	2492		58.782	19.529	1	1123500			46787	6321	38781	38803	50248	50248					0.08011900899919056
QRYVQLKQ	8	Unmodified	_QRYVQLKQ_					0	0	0		ENST00000481947.1_1_16:105509-105883:+|nuORF;ENSG00000161981|ENST00000293861|SNRNP25;nc|ENSG00000161981|Q9BV90|SNRNP25	ENST00000481947.1_1_16:105509-105883:+|nuORF	ENST00000481947.1_1_16:105509-105883:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8057250976562	2	531.806365	1061.59818	-0.15092	-8.026E-05	-0.093261	-4.9597E-05	-0.24418	-0.00012986	531.8061431998083	41.419	1.3311	38.709	38.438	39.769	-2.7097					48	26	3	0	0	0	0.64377	1	2173	2173		54.765	1.4132	1	199510			46788	6148	38782	38804	50249	50249					0.06984253945756791
QRYVRHPIS	9	Unmodified	_QRYVRHPIS_					0	0	0			REV__nc|ENSG00000122390|Q9H7X0-3|NAA60	REV__nc|ENSG00000122390|Q9H7X0-3|NAA60	MULTI-SECPEP	OvCa9_classI_Rep4_	4	578.8453369140625	2	578.322714	1154.63087	-0.96322	-0.00055705	2.4006	0.0013883	1.4374	0.00083127	578.324014100157	62.885	1.207	59.427	59.061	60.268	-3.4577					42	24	2	0	0	0	0.027462	1	4445	4445		23.042	0.46283	1	336890	+		46789	18592	38783	38805	50250	50250					0.05974461068603887
QSAIKSALV	9	Unmodified	_QSAIKSALV_					0	0	0			REV__ENST00000295709.7_1_2:219536839-219537529:+|nuORF	REV__ENST00000295709.7_1_2:219536839-219537529:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.7764892578125	2	458.776742	915.538931	-1.1528	-0.00052886	1.1441	0.00052487	-0.0086935	-3.9884E-06	458.7771328761946	45.555	1.2527	42.517	42.075	43.328	-3.0385					55	23	3	0	0	0	0.44568	1	2356	2356		47.657	6.8792	1	304260	+		46790	24193	38784	38806	50251	50251					0.07778357931556457
QSAKLKSTLTT	11	Unmodified	_QSAKLKSTLTT_					0	0	0			REV__nc|ENSG00000090615|Q08378-4|GOLGA3	REV__nc|ENSG00000090615|Q08378-4|GOLGA3	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3425903320312	2	589.342978	1176.6714	-3.0463	-0.0017953	3.0317	0.0017867	-0.014664	-8.6422E-06	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.71789	1	14854	14854		23.523	0.48021	1	272220	+		46791	17227	38785	38807	50252	50252					0.09013337877695449
QSAKRLFSL	9	Unmodified	_QSAKRLFSL_					0	0	0			REV__ENST00000419693.1_3_7:2347403-2347532:-|nuORF	REV__ENST00000419693.1_3_7:2347403-2347532:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7588500976562	2	525.308741	1048.60293	-0.80284	-0.00042174	-0.44402	-0.00023325	-1.2469	-0.00065499	525.3084066033807	49.295	0.51905	49.295	49.031	49.55	0					17	11	2	0	0	0	0.027462	1	3684	3684		32.812	0	1	295160	+		46792	25585	38786	38808	50253	50253					0.08057138088520333
QSARKRRW	8	Unmodified	_QSARKRRW_					0	0	0			REV__ENST00000423898.1_1_1:35321391-35325088:-|nuORF	REV__ENST00000423898.1_1_1:35321391-35325088:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7969970703125	2	544.315223	1086.61589	0.1419	7.724E-05	3.5243	0.0019183	3.6662	0.0019956	544.3165698648429	67.347	0.78368	67.347	67.096	67.88	0					29	19	2	0	0	0	0.028476	1	6358	6358		21.96	0	1	763470	+		46793	25636	38787	38809	50254	50254					0.07605013991269516
QSARKRRW	8	Unmodified	_QSARKRRW_					0	0	0			REV__ENST00000423898.1_1_1:35321391-35325088:-|nuORF	REV__ENST00000423898.1_1_1:35321391-35325088:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	544.315223	1086.61589	0.52276	0.00028454	10.773	0.005864	11.296	0.0061485	544.3210008455947	69.9	0.79578	67.18	67.006	67.801	-2.7196	-0.083572	0.0022637	NaN	29.15	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21909	+		46794	25636	38787	38809							0.07605013991269516
QSCNKKKSL	9	Carbamidomethyl (C)	_QSC(Carbamidomethyl (C))NKKKSL_	QSC(1)NKKKSL		QSC(96)NKKKSL		0	1	0		L1M1_dup621|chr1:224985612-224987088:+|1.1406864670825911|0.0275683224481481|5.37|427.0|7|1|sense	L1M1_dup621|chr1:224985612-224987088:+|1.1406864670825911|0.0275683224481481|5.37|427.0|7|1|sense	L1M1_dup621|chr1:224985612-224987088:+|1.1406864670825911|0.0275683224481481|5.37|427.0|7|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.750732421875	2	546.79514	1091.57573	0.38438	0.00021018	-0.26673	-0.00014585	0.11765	6.4328E-05	546.7949705801648	45.751	0.48032	45.751	45.454	45.934	0					15	10	2	0	0	0	0.027026	1	3150	3150		95.815	16.103	1	185840			46795	14538	38788	38810	50255	50255	165				0.03360286485826691
QSCSFYSLC	9	Unmodified	_QSCSFYSLC_					0	0	0		ENST00000284320.5_1_3:100084163-100084355:-|nuORF	ENST00000284320.5_1_3:100084163-100084355:-|nuORF	ENST00000284320.5_1_3:100084163-100084355:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.240966796875	2	519.206978	1036.3994	-0.30232	-0.00015697	1.0892	0.00056553	0.78689	0.00040856	519.2088265792495	64.945	0.24529	64.945	64.75	64.995	0					6	5	2	0	0	0	0.027462	1	5908	5908		19.997	0	1	140430			46796	10067	38789	38811	50256	50256					-0.11734090739605563
QSDHVRIY	8	Unmodified	_QSDHVRIY_					0	0	0		tr|A0A7D7A2H6|A0A7D7A2H6_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16950PE=4SV=1	tr|A0A7D7A2H6|A0A7D7A2H6_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16950PE=4SV=1	tr|A0A7D7A2H6|A0A7D7A2H6_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16950PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.78521728515625	2	509.259248	1016.50394	1.9598	0.00099804	-2.3206	-0.0011818	-0.36085	-0.00018377	509.2581083596705	78.102	0.99386	78.102	77.757	78.75	0					48	23	4	0	0	0	0.028476	1	7930	7930		44.117	12.162	1	2049800			46797	36078	38790	38812	50257	50257					-0.0036488487638735023
QSDLEVRKN	9	Unmodified	_QSDLEVRKN_					0	0	0		tr|A0A7D6ZXC2|A0A7D6ZXC2_9CLOTPentapeptiderepeat-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11360PE=4SV=1	tr|A0A7D6ZXC2|A0A7D6ZXC2_9CLOTPentapeptiderepeat-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11360PE=4SV=1	tr|A0A7D6ZXC2|A0A7D6ZXC2_9CLOTPentapeptiderepeat-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11360PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.7855834960938	2	544.78837	1087.56219	-6.9442	-0.0037831	0.57988	0.00031591	-6.3643	-0.0034672	544.7884367491765	160.62	0.76315	159.01	158.71	159.48	-1.6101					32	15	3	0	0	0	0.63254	1	15877	15877		28.081	0.19925	1	60033			46798	35873	38791	38813	50258	50258					0.021907519782416784
QSDQRVIIKL	10	Unmodified	_QSDQRVIIKL_					0	0	0		nc|ENSG00000099956|Q12824-2|SMARCB1;ENSG00000099956|ENST00000644036|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.2143859863281	3	400.575067	1198.70337	1.1886	0.00047613	-1.0422	-0.00041749	0.14639	5.8641E-05	400.5745397794404	47.505	0.51819	47.505	47.294	47.812	0					29	11	3	0	0	0	0.026618	1	3421	3421		50.034	0	1	1280200			46799	1987	38792	38814	50259	50259					0.11196750351518858
QSEEDLLTL	9	Unmodified	_QSEEDLLTL_					0	0	0			REV__ENST00000375857.6_1_13:109445985-109707944:+|nuORF	REV__ENST00000375857.6_1_13:109445985-109707944:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.7769165039062	2	524.263862	1046.51317	-1.4752	-0.00077341	-1.107	-0.00058037	-2.5823	-0.0013538	524.2641941551107	42.362	0.45466	39.382	39.216	39.67	-2.9804					9	8	2	0	0	0	0.027462	1	1990	1990		25.574	0	1	35493	+		46800	16632	38793	38815	50260	50260					-0.008225811013744533
QSEEKSYFREV	11	Unmodified	_QSEEKSYFREV_					0	0	0			REV__tr|A0A553SIG8|A0A553SIG8_NIACIPhospholipaseDfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_14840PE=4SV=1	REV__tr|A0A553SIG8|A0A553SIG8_NIACIPhospholipaseDfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_14840PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.23004150390625	3	467.893013	1400.65721	-0.84162	-0.00039379	-2.2972	-0.0010749	-3.1388	-0.0014686	468.2262649959358	37.017	0.36501	37.017	36.84	37.205	0					16	7	4	0	0	0	0.026204	1	2008	2008		16.53	1.1924	1	107700	+		46801	29892	38794	38816	50261	50261					-0.027093593412473638
QSELPELH	8	Unmodified	_QSELPELH_					0	0	0			REV__nc|ENSG00000010030|Q9Y603-8|ETV7	REV__nc|ENSG00000010030|Q9Y603-8|ETV7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.29315185546875	2	476.740357	951.46616	0.51448	0.00024527	2.8482	0.0013578	3.3627	0.0016031	476.74152528191297	75.636	0.68018	72.698	72.352	73.033	-2.9389					18	13	2	0	0	0	0.028476	1	5977	5977		53.351	30.309	1	26069	+		46802	16472	38795	38817	50262	50262					-0.011513958618593279
QSEQSEGPK	9	Unmodified	_QSEQSEGPK_					0	0	0			REV__ENSG00000180758|ENST00000377411|GPR157	REV__ENSG00000180758|ENST00000377411|GPR157	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.7754821777344	2	495.230353	988.446153	-0.54475	-0.00026978	0.6075	0.00030085	0.062754	3.1078E-05	495.2306124887739	40.523	0.54382	40.523	40.294	40.838	0					15	11	2	0	0	0	0.027459	1	2506	2506		36.447	9.7538	1	93461	+		46803	22191	38796	38818	50263	50263					-0.048531915924627356
QSEQSKHTQI	10	Unmodified	_QSEQSKHTQI_					0	0	0			REV__BAP1|p.E600Gfs*17|1|0.13|ENSG00000163930|chr3:52403229-52403229|T/-|frameshift_variant	REV__BAP1|p.E600Gfs*17|1|0.13|ENSG00000163930|chr3:52403229-52403229|T/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.2952270507812	2	593.296559	1184.57856	0.24696	0.00014652	2.599	0.001542	2.846	0.0016885	593.2982928945846	62.815	0.6766	62.815	62.581	63.257	0					23	16	2	0	0	0	0.02663	1	5592	5592		35.152	0	1	801680	+		46804	15693	38797	38819	50264	50264					-0.006341668556387958
QSESCMDMHN	10	Carbamidomethyl (C),Oxidation (M)	_QSESC(Carbamidomethyl (C))M(Oxidation (M))DMHN_	QSESC(1)MDMHN	QSESCM(1)DMHN	QSESC(94)MDMHN	QSESCM(52)DM(-52)HN	0	1	1			REV__nc|ENSG00000147724|Q49AJ0-2|FAM135B	REV__nc|ENSG00000147724|Q49AJ0-2|FAM135B	MULTI-SECPEP	OvCa99_classI_Rep5	1	627.7462768554688	2	627.71283	1253.41111	1.1171	0.00070122	2.7713	0.0017396	3.8884	0.0024408	628.2141579993598	139.4	0.53149	139.4	139.17	139.7	0					13	10	2	0	0	0	0.02754	1	16269	16269		93.598	53.539	2	24129	+		46805	20082	38798	38820	50265	50265	219	469			-0.2054626177857699
QSFKDPYKV	9	Unmodified	_QSFKDPYKV_					0	0	0			REV__ENSG00000185974|ENST00000335678|GRK1	REV__ENSG00000185974|ENST00000335678|GRK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.302490234375	2	556.292756	1110.57096	0.76975	0.0004282	-1.3145	-0.00073124	-0.54474	-0.00030303	556.2916563601548	72.293	0.24619	72.293	72.165	72.412	0					10	5	3	0	0	0	0.027462	1	7024	7024		5.5578	0	1	116250	+		46806	22550	38799	38821	50266	50266					0.020097256146982545
QSFLRDVHS	9	Unmodified	_QSFLRDVHS_					0	0	0			REV__nc|ENSG00000106328|Q9NQT6-2|FSCN3	REV__nc|ENSG00000106328|Q9NQT6-2|FSCN3	MULTI-MSMS	OvCa9_classI_Rep3	3	544.7783203125	2	544.777805	1087.54106	1.5844	0.00086316	1.4005	0.00076293	2.9849	0.0016261	544.7783465181305	61.638	1.529	58.569	57.997	59.526	-3.0685					84	39	3	0	0	0	0.66262	1	2158	2158		24.519	1.4825	1	38046	+		46807	17794	38800	38822	50267	50267					0.0007878666935994261
QSFPKVDHS	9	Unmodified	_QSFPKVDHS_					0	0	0			REV__nc|ENSG00000197905|Q15561-2|TEAD4	REV__nc|ENSG00000197905|Q15561-2|TEAD4	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.7837524414062	2	522.759081	1043.50361	-0.28302	-0.00014795	-0.97702	-0.00051075	-1.26	-0.0006587	523.2592843002673	72.824	0.15129	72.824	72.764	72.915	0					5	3	2	0	0	0	0.027462	1	7122	7122		11.511	0	1	155220	+		46808	22966	38801	38823	50268	50268					-0.016403045962533724
QSFPWGKI	8	Unmodified	_QSFPWGKI_					0	0	0		ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	ENSG00000134588|ENST00000511190|USP26	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.7889404296875	2	481.758352	961.502152	2.5016	0.0012052	-2.0785	-0.0010013	0.42311	0.00020384	481.7553357644613	102.3	0.59314	102.3	101.95	102.55	0					33	13	4	0	0	0	0.028476	1	11360	11360		52.937	6.9645	1	355160			46809	4311	38802	38824	50269	50269					0.019861061056758444
QSFVGMSLL	9	Unmodified	_QSFVGMSLL_					0	0	0			REV__ENST00000542340.1_1_12:1909550-1920875:-|nuORF	REV__ENST00000542340.1_1_12:1909550-1920875:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	491.2554626464844	2	491.257328	980.500103	2.4232	0.0011904	-3.2889	-0.0016157	-0.86573	-0.0004253	491.25555028457035	88.757	0.61104	88.757	88.508	89.119	0					34	14	4	0	0	0	0.26076	1	9468	9468		67.494	3.2864	1	2909400	+		46810	20214	38803	38825	50270	50270					0.009073093055576464
QSGAVQLFRS	10	Unmodified	_QSGAVQLFRS_					0	0	0			REV__ENST00000479404.5_1_9:215217-215412:+|nuORF	REV__ENST00000479404.5_1_9:215217-215412:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.823486328125	2	546.793455	1091.57236	-0.23012	-0.00012583	2.3151	0.0012659	2.0849	0.00114	546.7951121403936	33.167	1.3172	33.167	32.748	34.065	0					47	26	5	0	0	0	0.026843	1	1510	1510		54.722	5.1863	1	65463	+		46811	26436	38804	38826	50271	50271					0.030233597034794002
QSGLRYAKKL	10	Unmodified	_QSGLRYAKKL_					0	0	0			REV__nc|ENSG00000160949|Q96HA7-2|TONSL	REV__nc|ENSG00000160949|Q96HA7-2|TONSL	MULTI-MSMS	OvCa99_classI_Rep5	1	582.34814453125	2	582.348397	1162.68224	-1.1785	-0.00068628	0.73764	0.00042956	-0.44082	-0.00025671	582.3488787987717	26.667	0.94838	26.667	26.442	27.39	0					55	18	4	0	0	0	0.49558	1	730	730		54.776	1.4249	1	3024500	+		46812	20681	38805	38827	50272	50272					0.10740785042662537
QSGRPLPG	8	Unmodified	_QSGRPLPG_					0	0	0			REV__NINL|p.R1202Efs*7|1|0.18|ENSG00000101004|chr20:25461615-25461615|A/-|frameshift_variant	REV__NINL|p.R1202Efs*7|1|0.18|ENSG00000101004|chr20:25461615-25461615|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	407.2178039550781	2	406.224677	810.434801	1.0821	0.00043958	-1.8109	-0.00073563	-0.72877	-0.00029604	406.2237419796087	104.75	0.77324	102.63	102.32	103.1	-2.1192					17	14	2	0	0	0	0.028476	1	9497	9497		16.473	4.2663	1	18186	+		46813	17466	38806	38828	50273	50273					0.022000758947115173
QSGRRRAAR	9	Unmodified	_QSGRRRAAR_					0	0	0			REV__ENST00000340622.7_1_7:149191544-149194826:-|nuORF	REV__ENST00000340622.7_1_7:149191544-149194826:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.296630859375	2	529.307929	1056.60131	2.2468	0.0011892	-3.9767	-0.0021049	-1.7299	-0.00091565	529.8080806327404	108.17	0.76879	108.17	107.86	108.63	0					35	17	3	0	0	0	0.027462	1	12281	12281		34.173	0	1	151310	+		46814	24625	38807	38829	50274	50274					0.0752694184311622
QSHVVPPLL	9	Unmodified	_QSHVVPPLL_					0	0	0		ENSG00000275489|ENST00000614158|C17orf98	ENSG00000275489|ENST00000614158|C17orf98	ENSG00000275489|ENST00000614158|C17orf98	MULTI-MSMS	OvCa9_classI_Rep2	2	495.2921142578125	2	495.292559	988.570566	-0.95705	-0.00047402	0.81768	0.00040499	-0.13937	-6.9028E-05	495.29273979029693	140.36	0.83247	140.13	139.89	140.73	-0.22697					32	16	3	0	0	0	0.5811	1	14058	14058		34.173	0	1	46085			46815	9572	38808	38830	50275	50275					0.07582350685515848
QSIGEVEQN	9	Unmodified	_QSIGEVEQN_					0	0	0		MACF1-CMTM4|1|fusion;MACF1-CMTM4|2|fusion;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1	MACF1-CMTM4|1|fusion;nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.7914733886719	2	502.238178	1002.4618	-0.90541	-0.00045473	0.53414	0.00026827	-0.37127	-0.00018647	502.2383320435519	49.966	0.60888	49.966	49.679	50.288	0					25	13	3	0	0	0	0.027444	1	3790	3790		63.534	15.877	1	565640			46816	15005;14812	38809	38831	50276	50276					-0.039329050754190575
QSILATYDD	9	Unmodified	_QSILATYDD_					0	0	0			REV__ENSG00000179242|ENST00000614565|CDH4	REV__ENSG00000179242|ENST00000614565|CDH4	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.7962036132812	2	513.242929	1024.47131	-0.72566	-0.00037244	-0.94595	-0.0004855	-1.6716	-0.00085794	513.2426070138928	61.594	0.36825	61.594	61.416	61.784	0					11	8	2	0	0	0	0.027462	1	5453	5453		35.618	21.843	1	154510	+		46817	22113	38810	38832	50277	50277					-0.03995136789899334
QSILLLLQP	9	Unmodified	_QSILLLLQP_					0	0	0		ENSG00000174842|ENST00000370360|GLMN;nc|ENSG00000174842|Q92990-2|GLMN	ENSG00000174842|ENST00000370360|GLMN	ENSG00000174842|ENST00000370360|GLMN	MULTI-SECPEP	OvCa9_classI_Rep2	2	512.786376953125	2	512.823692	1023.63283	0.17838	9.1476E-05	0.30514	0.00015648	0.48352	0.00024796	512.8238404610713	107.88	0.39241	107.65	107.53	107.93	-0.22498					10	7	2	0	0	0	0.027462	1	10109	10109		27.882	11.409	1	10737			46818	7497	38811	38833	50278	50278					0.12196077033843267
QSIMAIQNEV	10	Oxidation (M)	_QSIM(Oxidation (M))AIQNEV_		QSIM(1)AIQNEV		QSIM(52)AIQNEV	0	0	1		nc|ENSG00000077522|P35609-2|ACTN2;ENSG00000077522|ENST00000366578|ACTN2	nc|ENSG00000077522|P35609-2|ACTN2	nc|ENSG00000077522|P35609-2|ACTN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	574.7877197265625	2	574.784438	1147.55432	-1.3785	-0.00079234	4.218	0.0024244	2.8395	0.0016321	574.786764539179	42.172	1.3413	39.191	38.959	40.3	-2.9804					66	25	4	0	0	0	0.52162	1	1960	1960		51.528	10.101	1	417380			46819	1575	38812	38834	50279	50279		59			-0.013551433335578622
QSIQIFLEP	9	Unmodified	_QSIQIFLEP_					0	0	0			REV__tr|A0A553SFT7|A0A553SFT7_NIACIRecombinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09505PE=4SV=1	REV__tr|A0A553SFT7|A0A553SFT7_NIACIRecombinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09505PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.2711181640625	2	537.795132	1073.57571	2.5163	0.0013533	3.5696	0.0019197	6.0859	0.003273	537.7961074972654	89.116	1.3822	89.116	88.551	89.933	0					92	33	5	0	0	0	0.027426	1	9600	9600		47.657	6.8792	1	4479300	+		46820	29622	38813	38835	50280	50280					0.0418660975747116
QSISYGIVIN	10	Unmodified	_QSISYGIVIN_					0	0	0			REV__ENSG00000115226|ENST00000264703|FNDC4	REV__ENSG00000115226|ENST00000264703|FNDC4	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.7835083007812	2	547.298039	1092.58152	1.6995	0.00093013	-0.11243	-6.1531E-05	1.5871	0.0008686	547.2975475544082	122.55	0.27518	122.55	122.4	122.68	0					11	5	3	0	0	0	0.026931	1	14113	14113		30.318	8.3578	1	71499	+		46821	18226	38814	38836	50281	50281					0.0389370826915183
QSITGEMKV	9	Unmodified	_QSITGEMKV_					0	0	0			REV__ENST00000545913.5_1_12:120126039-120222037:-|nuORF	REV__ENST00000545913.5_1_12:120126039-120222037:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.77294921875	2	496.757692	991.500831	-0.83014	-0.00041238	-1.2272	-0.00060964	-2.0574	-0.001022	496.7570519310433	80.882	0.78563	78.171	78.003	78.788	-2.7106					27	15	3	0	0	0	0.027462	1	6652	6652		20.947	0	1	230320	+		46822	27312	38815	38837	50282	50282					0.004741039545933745
QSITSKNTK	9	Unmodified	_QSITSKNTK_					0	0	0			REV__tr|A0A553ST84|A0A553ST84_NIACILacIfamilyDNA-bindingtranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04455PE=4SV=1	REV__tr|A0A553ST84|A0A553ST84_NIACILacIfamilyDNA-bindingtranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04455PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	503.7825622558594	2	503.780013	1005.54547	1.0132	0.00051045	4.2956	0.0021641	5.3089	0.0026745	503.78203490160917	74.561	1.1584	74.561	74.249	75.407	0					77	28	4	0	0	0	0.35444	1	7362	7362		56.721	1.9447	1	9367300	+		46823	30929	38816	38838	50283	50283					0.04292251092272181
QSKARDWDTK	10	Unmodified	_QSKARDWDTK_					0	0	0			REV__ENSG00000130309|ENST00000252599|COLGALT1;REV__ENST00000593832.1_1_19:17691448-17692250:+|nuORF	REV__ENST00000593832.1_1_19:17691448-17692250:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.2233581542969	3	412.210676	1233.6102	0.48682	0.00020067	3.267	0.0013467	3.7538	0.0015473	412.2108660002031	38.701	0.62276	38.701	38.44	39.063	0					37	13	4	0	0	0	0.027061	1	2222	2222		14.779	0	1	135060	+		46824	18940;27971	38817	38839	50284	50284					0.002738258982617481
QSKATVRPPD	10	Unmodified	_QSKATVRPPD_					0	0	0		ENSG00000122735|ENST00000242317|DNAI1;nc|ENSG00000122735|Q9UI46-2|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	ENSG00000122735|ENST00000242317|DNAI1	MULTI-SECPEP	OvCa9_classI_Rep2	2	549.3240966796875	2	549.798737	1097.58292	-1.8295	-0.0010058	0.49824	0.00027393	-1.3312	-0.00073191	549.7985676913255	35.485	1.0938	32.775	32.553	33.647	-2.7097					50	21	4	0	0	0	0.026674	1	1473	1473		47.96	3.5823	1	189760			46825	3554	38818	38840	50285	50285					0.03803342357900874
QSKCRLERA	9	Unmodified	_QSKCRLERA_					0	0	0		nc|ENSG00000198732|Q9H4F8|SMOC1;ENSG00000198732|ENST00000361956|SMOC1	nc|ENSG00000198732|Q9H4F8|SMOC1	nc|ENSG00000198732|Q9H4F8|SMOC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.2406005859375	2	545.792932	1089.57131	-0.30599	-0.00016701	-2.7751	-0.0015146	-3.0811	-0.0016816	545.7914280688813	23.067	0.20354	23.067	22.991	23.195	0					5	3	2	0	0	0	0.027462	1	282	282		14.865	0	1	29059			46826	8860	38819	38841	50286	50286					0.030108220629017524
QSKDQVRW	8	Unmodified	_QSKDQVRW_					0	0	0		nc|ENSG00000169242|P20827-2|EFNA1;ENST00000474413.5_1_1:155102304-155106540:+|nuORF;ENST00000497282.1_1_1:155103761-155106540:+|nuORF;ENSG00000169242|ENST00000368407|EFNA1;ENST00000469878.5_1_1:155100369-155106166:+|nuORF	nc|ENSG00000169242|P20827-2|EFNA1	nc|ENSG00000169242|P20827-2|EFNA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7588500976562	2	523.772522	1045.53049	-0.98532	-0.00051609	3.8627	0.0020232	2.8774	0.0015071	524.2753229459088	49.372	0.65227	49.372	48.94	49.593	0					17	14	2	0	0	0	0.028476	1	3684	3684		34.173	2.6427	1	324200			46827	6992	38820	38842	50287	50287					0.009548040149411463
QSKKPLKK	8	Unmodified	_QSKKPLKK_					0	0	0			REV__ENST00000473629.6_1_11:124492979-124496722:+|nuORF	REV__ENST00000473629.6_1_11:124492979-124496722:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	478.8167724609375	2	478.816202	955.617851	1.0861	0.00052004	-1.1013	-0.00052731	-0.015197	-7.2768E-06	478.81554679630005	69.339	1.3951	66.524	66.312	67.707	-2.8143					70	27	4	0	0	0	0.60331	1	3081	3081		63.306	2.3343	1	309060	+		46828	20362	38821	38843	50288	50288					0.13826629956508896
QSKLQLKYQ	9	Unmodified	_QSKLQLKYQ_					0	0	0			REV__ENSG00000153339|ENST00000283351|TRAPPC8	REV__ENSG00000153339|ENST00000283351|TRAPPC8	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2986450195312	2	568.327131	1134.63971	-0.41468	-0.00023568	-0.11002	-6.2525E-05	-0.5247	-0.0002982	568.3268985898189	39.393	0.35032	39.393	39.196	39.547	0					17	7	3	0	0	0	0.027462	1	2300	2300		35.618	7.5368	1	316050	+		46829	20338	38822	38844	50289	50289					0.07777389914417654
QSKRRCHPAPN	11	Unmodified	_QSKRRCHPAPN_					0	0	0			REV__ENSG00000189325|ENST00000437635|BNIP5	REV__ENSG00000189325|ENST00000437635|BNIP5	MSMS	OvCa99_classI_Rep5	1	431.8914794921875	3	431.891283	1292.65202	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.501	1	38.501	38.001	39.001	0								0	0	0	0.19474	1	2192	2192		29.245	5.7306	1		+		46830	22772	38823	38845	50290	50290					0.0174010310581707
QSKVKHLI	8	Unmodified	_QSKVKHLI_					0	0	0			REV__nc|ENSG00000155324|Q96HH9-5|GRAMD2B	REV__nc|ENSG00000155324|Q96HH9-5|GRAMD2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	476.2455749511719	2	476.800552	951.58655	0.28565	0.0001362	-0.038955	-1.8574E-05	0.2467	0.00011762	476.80032443065085	62.426	0.58007	62.426	62.081	62.661	0					20	13	2	0	0	0	0.028476	1	5550	5550		30.504	15.84	1	367270	+		46831	20421	38824	38846	50291	50291					0.10882056922412175
QSLAFSGAAL	10	Unmodified	_QSLAFSGAAL_					0	0	0		ENSG00000155269|ENST00000382487|GPR78	ENSG00000155269|ENST00000382487|GPR78	ENSG00000155269|ENST00000382487|GPR78	MULTI-MSMS	OvCa9_classI_Rep3	3	482.7605895996094	2	482.758549	963.502546	2.1392	0.0010327	1.1547	0.00055742	3.2938	0.0015901	482.7588804234167	57.803	3.1186	54.676	53.456	56.575	-3.1264					158	85	3	0	0	0	0.38315	1	1699	1699		70.816	3.3225	1	89902			46832	5776	38825	38847	50292	50292					0.01933481034848228
QSLATVEAGL	10	Unmodified	_QSLATVEAGL_					0	0	0			REV__tr|A0A553STD9|A0A553STD9_NIACINAD(P)-dependentalcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_04875PE=3SV=1	REV__tr|A0A553STD9|A0A553STD9_NIACINAD(P)-dependentalcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_04875PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.80682373046875	2	494.769114	987.523675	1.0747	0.00053174	-0.32198	-0.0001593	0.75274	0.00037243	494.768772088056	97.246	0.75433	94.851	94.547	95.301	-2.3947					23	14	2	0	0	0	0.026606	1	8657	8657		44.377	0	1	19134	+		46833	30953	38826	38848	50293	50293					0.029414463437205995
QSLDSLSFP	9	Unmodified	_QSLDSLSFP_					0	0	0			REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|5|1|sense;REV__HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|7|1|sense	REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|5|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.2336120605469	2	497.248015	992.481476	0.50324	0.00025023	-3.2649	-0.0016235	-2.7617	-0.0013732	497.2461232867893	111.12	0.78917	109.52	109.17	109.96	-1.6011					21	14	2	0	0	0	0.027418	1	10241	10241		58.782	0	1	56704	+		46834	28261;28254	38827	38849	50294	50294					-0.015065290646589347
QSLFYLPSL	9	Unmodified	_QSLFYLPSL_					0	0	0		tr|A0A553SM24|A0A553SM24_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_21765PE=3SV=1	tr|A0A553SM24|A0A553SM24_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_21765PE=3SV=1	tr|A0A553SM24|A0A553SM24_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_21765PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.2916259765625	2	534.292225	1066.5699	1.238	0.00066146	1.9867	0.0010615	3.2247	0.0017229	534.2930624418279	123.49	0.23404	123.49	123.33	123.56	0					6	4	2	0	0	0	0.027462	1	14230	14230		19.997	1.7347	1	81726			46835	33787	38828	38850	50295	50295					0.039275112458199146
QSLGKLLAPPL	11	Unmodified	_QSLGKLLAPPL_					0	0	0			REV__ENST00000275732.5_1_7:100286326-100286413:-|nuORF	REV__ENST00000275732.5_1_7:100286326-100286413:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	568.8531494140625	2	568.855524	1135.69649	-7.0365	-0.0040027	3.4991	0.0019905	-3.5374	-0.0020123	568.857375140279	161.4	1.8223	160.03	159.69	161.51	-1.3692					107	37	5	0	0	0	0.68021	1	14080	14080		36.447	14.487	1	827460	+		46836	24096	38829	38851	50296	50296					0.13407437470914374
QSLGTTKLR	9	Unmodified	_QSLGTTKLR_					0	0	0		LOXL4|p.V443Pfs*13|1|0.36|ENSG00000138131|chr10:98256881-98256882|-/AGTGCACCGG|frameshift_variant;ENSG00000138131|ENST00000260702|LOXL4	LOXL4|p.V443Pfs*13|1|0.36|ENSG00000138131|chr10:98256881-98256882|-/AGTGCACCGG|frameshift_variant	LOXL4|p.V443Pfs*13|1|0.36|ENSG00000138131|chr10:98256881-98256882|-/AGTGCACCGG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.7914733886719	2	502.298373	1002.58219	-0.86816	-0.00043608	2.8645	0.0014388	1.9963	0.0010028	502.8019911465735	50.164	1.0874	50.164	49.507	50.594	0					29	24	2	0	0	0	0.027425	1	3790	3790		63.534	19.157	1	168800			46837	4661	38830	38852	50297	50297					0.08100547708841077
QSLHDDCSCH	10	Unmodified	_QSLHDDCSCH_					0	0	0			REV__ENST00000485050.5_1_3:113805105-113805411:+|nuORF	REV__ENST00000485050.5_1_3:113805105-113805411:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.2806396484375	2	572.710947	1143.40734	-1.0538	-0.00060353	4.1572	0.0023809	3.1033	0.0017773	572.7133277244261	37.046	0.32009	37.046	36.885	37.205	0					9	6	2	0	0	0	0.026681	1	1993	1993		44.377	22.417	1	34807	+		46838	26556	38831	38853	50298	50298					-0.15862563490145476
QSLLITRKS	9	Unmodified	_QSLLITRKS_					0	0	0		ENST00000371857.7_1_10:90751224-90770455:+|nuORF	ENST00000371857.7_1_10:90751224-90770455:+|nuORF	ENST00000371857.7_1_10:90751224-90770455:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.3123168945312	2	523.321848	1044.62914	0.28408	0.00014866	3.6074	0.0018878	3.8915	0.0020365	523.3234534632496	123.3	0.88716	123.08	122.61	123.5	-0.21803					29	17	2	0	0	0	0.027462	1	11935	11935		18.262	0	1	30092			46839	10968	38832	38854	50299	50299					0.10861407259994849
QSLLNSSPAI	10	Unmodified	_QSLLNSSPAI_					0	0	0			REV__ENSG00000140836|ENST00000268489|ZFHX3	REV__ENSG00000140836|ENST00000268489|ZFHX3	MULTI-MSMS	OvCa9_classI_Rep3	3	515.2816162109375	2	515.282389	1028.55022	0.85124	0.00043863	2.2456	0.0011571	3.0969	0.0015958	515.2837199382453	104.32	1.6643	102.88	102.5	104.16	-1.4347					77	31	3	0	0	0	0.53807	1	7268	7268		49.536	0.094497	1	555220	+		46840	19702	38833	38855	50300	50300					0.03709135235044414
QSLMSLPHLLL	11	Unmodified	_QSLMSLPHLLL_					0	0	0		ENST00000295851.9_2_2:204281657-204292010:+|nuORF;ENST00000464761.1_1_2:204281657-204301507:+|nuORF	ENST00000295851.9_2_2:204281657-204292010:+|nuORF	ENST00000295851.9_2_2:204281657-204292010:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	626.3616943359375	2	626.360116	1250.70568	0.91603	0.00057377	2.2173	0.0013888	3.1333	0.0019626	626.3614117570846	35.259	1.4998	32.41	32.139	33.639	-2.849					82	29	4	0	0	0	0.67529	1	1131	1131		37.812	1.3648	1	384260			46841	10125	38834	38856	50301	50301					0.0903546276497309
QSLNVILRTT	10	Unmodified	_QSLNVILRTT_					0	0	0			REV__nc|ENSG00000161091|Q6NUT3-2|MFSD12	REV__nc|ENSG00000161091|Q6NUT3-2|MFSD12	MULTI-SECPEP	OvCa9_classI_Rep2	2	573.8157348632812	2	572.837862	1143.66117	-1.4553	-0.00083366	-0.46052	-0.0002638	-1.9158	-0.0010975	572.8376495813186	59.877	0.41302	57.107	56.983	57.396	-2.7702					12	7	2	0	0	0	0.027001	1	4373	4373		16.007	0	1	26640	+		46842	20689	38835	38857	50302	50302					0.09508774943151366
QSLNYFLLL	9	Unmodified	_QSLNYFLLL_					0	0	0			REV__nc|ENSG00000162006|Q96KJ4|MSLNL	REV__nc|ENSG00000162006|Q96KJ4|MSLNL	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.3211669921875	2	555.813325	1109.6121	1.8178	0.0010104	2.8966	0.00161	4.7144	0.0026203	555.8147327837876	129.97	0.52318	129.97	129.72	130.25	0					19	10	3	0	0	0	0.027455	1	15108	15108		42.396	0	1	61447	+		46843	20718	38836	38858	50303	50303					0.061674866541807205
QSLPRRRDWWV	11	Unmodified	_QSLPRRRDWWV_					0	0	0			REV__ENSG00000161677|ENST00000598418|JOSD2	REV__ENSG00000161677|ENST00000598418|JOSD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.31866455078125	3	500.272381	1497.79531	-0.61768	-0.00030901	-2.3514	-0.0011763	-2.9691	-0.0014853	500.27196262429965	33.726	0.48395	33.726	33.533	34.017	0					14	9	3	0	0	0	0.026416	1	1578	1578		8.0344	2.0333	1	18375	+		46844	20702	38837	38859	50304	50304					0.06632853488554247
QSLQKTKTI	9	Unmodified	_QSLQKTKTI_					0	0	0		ENSG00000268988|ENST00000598475|SPANXN2	ENSG00000268988|ENST00000598475|SPANXN2	ENSG00000268988|ENST00000598475|SPANXN2	MULTI-MSMS	OvCa9_classI_Rep2	2	523.8131713867188	2	523.813856	1045.61316	2.8114	0.0014727	-2.6468	-0.0013864	0.16465	8.6246E-05	523.812092065733	27.011	0.63779	24.301	24.022	24.66	-2.7097					38	19	3	0	0	0	0.46356	1	432	432		45.972	5.1941	1	44042			46845	9539	38838	38860	50305	50305					0.09217701023112568
QSLQLLHKPQ	10	Unmodified	_QSLQLLHKPQ_					0	0	0			REV__ENST00000360578.6_1_5:664230-664467:-|nuORF	REV__ENST00000360578.6_1_5:664230-664467:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	596.33056640625	2	596.345855	1190.67716	0.9773	0.00058281	2.3016	0.0013725	3.2789	0.0019554	596.3469340271242	72.148	0.54402	69.546	69.424	69.968	-2.6023					17	10	2	0	0	0	0.026891	1	3417	3417		31.53	11.533	1	19058	+		46846	24833	38839	38861	50306	50306					0.08944481180037656
QSLQTGFAL	9	Unmodified	_QSLQTGFAL_					0	0	0		chr2:132668537-132671629|166|90.52|0.01|14.12|-|2|LYPD1,None|2	chr2:132668537-132671629|166|90.52|0.01|14.12|-|2|LYPD1,None|2	chr2:132668537-132671629|166|90.52|0.01|14.12|-|2|LYPD1,None|2	MULTI-MSMS	OvCa9_classI_Rep3	3	482.7598571777344	2	482.758549	963.502546	2.1392	0.0010327	1.1547	0.00055742	3.2938	0.0015901	482.7588804234167	57.803	3.1186	54.676	53.456	56.575	-3.1264					158	85	3	0	0	0	0.3076	2	1752	1752;1791		62.107	5.6736	1	89902			46847	430	38840	38862	50307;50308	50307					0.01933481034848228
QSLTDPTIY	9	Unmodified	_QSLTDPTIY_					0	0	0		SLC48A1|p.S108I|1|0.3|ENSG00000211584|chr12:47780163-47780163|G/T|missense_variant	SLC48A1|p.S108I|1|0.3|ENSG00000211584|chr12:47780163-47780163|G/T|missense_variant	SLC48A1|p.S108I|1|0.3|ENSG00000211584|chr12:47780163-47780163|G/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.7781982421875	2	519.261122	1036.50769	-0.50621	-0.00026285	0.44913	0.00023322	-0.057077	-2.9638E-05	519.26219714299	69.315	0.41383	69.315	69.019	69.433	0					13	9	2	0	0	0	0.027462	1	6559	6559		10.866	0	1	160410			46848	32833	38841	38863	50309	50309					-0.009102598931804096
QSLTIKSNSSG	11	Unmodified	_QSLTIKSNSSG_					0	0	0		ENSG00000151458|ENST00000504087|ANKRD50;nc|ENSG00000151458|Q9ULJ7-2|ANKRD50	ENSG00000151458|ENST00000504087|ANKRD50	ENSG00000151458|ENST00000504087|ANKRD50	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.7761840820312	2	561.293485	1120.57242	0.58746	0.00032974	2.9961	0.0016817	3.5835	0.0020114	561.2950209802848	68.88	0.53534	68.88	68.649	69.184	0					20	12	2	0	0	0	0.025306	1	6517	6517		37.508	0	1	764950			46849	5552	38842	38864	50310	50310					0.016953149128084988
QSLTQLVQS	9	Unmodified	_QSLTQLVQS_					0	0	0			REV__tr|A0A553SRU0|A0A553SRU0_NIACIPhytoenedesaturaseOS=NialliacirculansOX=1397GN=crtIPE=3SV=1	REV__tr|A0A553SRU0|A0A553SRU0_NIACIPhytoenedesaturaseOS=NialliacirculansOX=1397GN=crtIPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.7914733886719	2	502.274564	1002.53457	-0.85701	-0.00043045	1.7253	0.00086655	0.86825	0.0004361	502.2752440304726	50.23	0.43439	50.23	50.031	50.465	0					11	9	2	0	0	0	0.027444	1	3790	3790		72.879	21.687	1	121500	+		46850	30765	38843	38865	50311	50311					0.03340848718005418
QSLVMLQAWS	10	Unmodified	_QSLVMLQAWS_					0	0	0		nc|ENSG00000151917|Q5SZJ8-2|BEND6	nc|ENSG00000151917|Q5SZJ8-2|BEND6	nc|ENSG00000151917|Q5SZJ8-2|BEND6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	581.8201293945312	2	581.799891	1161.58523	-1.985	-0.0011549	1.5901	0.00092513	-0.39487	-0.00022974	581.8007399186263	48.862	0.52184	45.754	45.502	46.024	-3.1077					15	9	2	0	0	0	0.027088	1	2750	2750		19.997	0	1	23051			46851	15097	38844	38866	50312	50312					0.010900547713390552
QSNQPETMI	9	Unmodified	_QSNQPETMI_					0	0	0			REV__ENSG00000267508|ENST00000614994|ZNF285	REV__ENSG00000267508|ENST00000614994|ZNF285	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2779541015625	2	524.242406	1046.47026	-0.8845	-0.00046369	-0.26047	-0.00013655	-1.145	-0.00060024	524.2441436628721	66.393	0.36905	66.393	66.25	66.619	0					11	8	2	0	0	0	0.027462	1	6134	6134		51.193	1.6567	1	239460	+		46852	23591	38845	38867	50313	50313					-0.05111674430440871
QSPCFLAASGL	11	Unmodified	_QSPCFLAASGL_					0	0	0		ENST00000361906.7_1_22:38616628-38616820:-|nuORF;ENST00000541788.1_22:38616387-38617064:-|nuORF	ENST00000361906.7_1_22:38616628-38616820:-|nuORF	ENST00000361906.7_1_22:38616628-38616820:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.82177734375	2	547.270967	1092.52738	-0.53169	-0.00029098	-3.3769	-0.0018481	-3.9086	-0.0021391	547.7701344874213	33.553	0.48975	33.553	33.335	33.824	0					15	9	2	0	0	0	0.025767	1	1536	1536		24.232	8.225	1	31624			46853	10808	38846	38868	50314	50314					-0.015182071540948527
QSPGEDTSL	9	Unmodified	_QSPGEDTSL_					0	0	0		ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000167306|Q9ULV0-2|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	ENSG00000167306|ENST00000285039|MYO5B	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.2523498535156	2	467.211629	932.408705	-0.50167	-0.00023439	0.93367	0.00043622	0.432	0.00020184	467.21178888127935	41.688	0.30335	41.688	41.462	41.766	0					9	6	2	0	0	0	0.027232	1	2624	2624		47.657	1.6851	1	56510			46854	6778	38847	38869	50315	50315					-0.06020282858094106
QSPMNPWLKD	10	Unmodified	_QSPMNPWLKD_					0	0	0		nc|ENSG00000197162|A8K8V0-2|ZNF785;ENSG00000197162|ENST00000395216|ZNF785	nc|ENSG00000197162|A8K8V0-2|ZNF785	nc|ENSG00000197162|A8K8V0-2|ZNF785	MULTI-MSMS	OvCa9_classI_Rep3	3	608.2964477539062	2	608.294973	1214.57539	3.6539	0.0022227	-0.80473	-0.00048951	2.8492	0.0017331	608.2942855637167	59.026	3.3501	55.911	55.036	58.386	-3.1147					203	93	3	0	0	0	0.71173	1	1886	1886		29.17	0	1	283460			46855	8685	38848	38870	50316	50316					-0.023311332340426816
QSPPIIYF	8	Unmodified	_QSPPIIYF_					0	0	0			REV__ENST00000246024.6_1_20:7960815-7961187:-|nuORF	REV__ENST00000246024.6_1_20:7960815-7961187:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	482.7598876953125	2	482.760561	963.506569	2.1391	0.0010327	-3.0117	-0.001454	-0.87261	-0.00042126	482.7588804234167	57.803	3.1186	54.676	53.456	56.575	-3.1264					158	85	3	0	0	0	0.75661	1	1829	1829		19.36	0.25645	1	89902	+		46856	23840	38849	38871	50317	50317					0.023355705285666772
QSPTLKIFSL	10	Unmodified	_QSPTLKIFSL_					0	0	0			REV__nc|ENSG00000198626|Q92736-2|RYR2	REV__nc|ENSG00000198626|Q92736-2|RYR2	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3275756835938	2	567.331882	1132.64921	-1.6483	-0.00093515	-2.1618	-0.0012264	-3.8101	-0.0021616	567.3305014697371	141.66	3.9446	141.43	139.35	143.3	-0.22697					200	79	3	0	0	0	0.762	1	14226	14226		23.523	1.8369	1	83872	+		46857	23038	38850	38872	50318	50318					0.0881915819995811
QSPVEKGNEDL	11	Unmodified	_QSPVEKGNEDL_					0	0	0			REV__tr|A0A7D7A290|A0A7D7A290_9CLOTDiscoidindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07485PE=3SV=1	REV__tr|A0A7D7A290|A0A7D7A290_9CLOTDiscoidindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07485PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	608.2985229492188	2	608.296224	1214.5779	0.47063	0.00028628	-0.083584	-5.0844E-05	0.38704	0.00023544	608.2961852172294	58.97	2.6323	55.578	55.15	57.782	-3.392					100	52	2	0	0	0	0.5466	1	3901	3901		49.536	3.5638	1	2056500	+		46858	32528	38851	38873	50319	50319					-0.02081006295361476
QSQDKKTIAQD	11	Unmodified	_QSQDKKTIAQD_					0	0	0			REV__nc|ENSG00000081014|Q9UPM8-2|AP4E1	REV__nc|ENSG00000081014|Q9UPM8-2|AP4E1	MULTI-MSMS	OvCa99_classI_Rep5	1	631.3234252929688	2	631.322773	1260.63099	3.0664	0.0019359	-2.3837	-0.0015049	0.68273	0.00043102	631.3212629363021	96.274	0.58633	96.274	95.956	96.543	0					25	13	2	0	0	0	0.29406	1	10541	10541		68.846	3.3808	1	1658900	+		46859	17063	38852	38874	50320	50320					0.011103714872888304
QSQLEAEENE	10	Unmodified	_QSQLEAEENE_					0	0	0		nc|ENSG00000131374|Q92609|TBC1D5;ENSG00000131374|ENST00000696125|TBC1D5	nc|ENSG00000131374|Q92609|TBC1D5	nc|ENSG00000131374|Q92609|TBC1D5	MULTI-MSMS	OvCa99_classI_Rep5	1	588.7581787109375	2	588.754389	1175.49423	0.41886	0.0002466	3.7221	0.0021914	4.141	0.002438	588.7566934356062	161.49	1.2185	161.49	161.06	162.28	0					32	23	2	0	0	0	0.54579	1	18940	18940		48.602	4.2244	1	51063			46860	4058	38853	38875	50321	50321					-0.08650162463072775
QSQLERGIL	9	Unmodified	_QSQLERGIL_					0	0	0		chr14:24164134-24164787|277|32.83|0.0|21.65|+|0|IRF9,None|1	chr14:24164134-24164787|277|32.83|0.0|21.65|+|0|IRF9,None|1	chr14:24164134-24164787|277|32.83|0.0|21.65|+|0|IRF9,None|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.297607421875	2	522.29583	1042.57711	-1.0898	-0.00056922	2.7634	0.0014433	1.6735	0.00087409	522.2970284175198	101.17	1.2156	98.902	98.602	99.817	-2.2665					60	24	3	0	0	0	0.27001	1	9059	9059		66.429	4.3219	1	331260			46861	345	38854	38876	50322	50322					0.057522438462456194
QSQRKRLC	8	Unmodified	_QSQRKRLC_					0	0	0			REV__nc|ENSG00000172046|O94966-2|USP19	REV__nc|ENSG00000172046|O94966-2|USP19	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.7640075683594	2	509.782367	1017.55018	-1.2102	-0.00061695	-3.9529	-0.0020151	-5.1632	-0.0026321	509.7802840536211	42.584	0.52408	39.603	39.461	39.985	-2.9804					16	9	2	0	0	0	0.028476	1	2015	2015		37.159	0	1	76557	+		46862	21669	38855	38877	50323	50323					0.04210856754048109
QSQRRERAID	10	Unmodified	_QSQRRERAID_					0	0	0			REV__nc|ENSG00000139218|Q99590-2|SCAF11	REV__nc|ENSG00000139218|Q99590-2|SCAF11	MULTI-SECPEP	OvCa9_classI_Rep4_	4	420.2593688964844	3	420.225208	1257.6538	-0.7106	-0.00029861	2.804	0.0011783	2.0934	0.00087972	420.22631163347864	74.698	0.86887	71.467	71.24	72.109	-3.2308					29	17	2	0	0	0	0.027118	1	5867	5867		9.2118	0	1	100390	+		46863	19598	38856	38878	50324	50324					0.03527435395426437
QSRLRKKRREE	11	Unmodified	_QSRLRKKRREE_					0	0	0		ENSG00000101191|ENST00000395343|DIDO1;DIDO1|p.I366Ffs*12|1|0.03|ENSG00000101191|chr20:62909764-62909765|-/GACAGCATGTGGGAAATGTCATAAA|frameshift_variant;nc|ENSG00000101191|Q9BTC0-2|DIDO1;nc|ENSG00000101191|Q9BTC0-3|DIDO1;nc|ENSG00000101191|Q9BTC0-1|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	MULTI-MSMS	OvCa9_classI_Rep3	3	496.29345703125	3	495.962207	1484.86479	-6.9468	-0.0034453	-0.084622	-4.1969E-05	-7.0314	-0.0034873	495.96210445138047	163.05	2.2058	161.66	160.17	162.38	-1.3926					163	48	5	0	0	0	0.72579	1	14152	14152		5.1424	1.5233	1	227040			46864	2148	38857	38879	50325	50325					0.14175312437305365
QSRRPQRG	8	Unmodified	_QSRRPQRG_					0	0	0		ENST00000480549.5_1_1:36789799-36790015:+|nuORF	ENST00000480549.5_1_1:36789799-36790015:+|nuORF	ENST00000480549.5_1_1:36789799-36790015:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.2447814941406	2	492.775931	983.537309	-0.46921	-0.00023122	2.7769	0.0013684	2.3077	0.0011372	492.7771220474674	58.797	0.81911	58.797	58.446	59.265	0					40	20	3	0	0	0	0.028476	1	5016	5016		26.693	0	1	1726700			46865	12531	38858	38880	50326	50326					0.04488161686174408
QSRRRKRKWRR	11	Unmodified	_QSRRRKRKWRR_					0	0	0			REV__ENST00000557821.5_1_15:40588574-40589003:-|nuORF	REV__ENST00000557821.5_1_15:40588574-40589003:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.7899780273438	3	538.332968	1611.97708	-3.051	-0.0016425	-4.0635	-0.0021875	-7.1145	-0.00383	538.3305948071575	49.468	0.41084	46.327	46.147	46.558	-3.1416					15	7	3	0	0	0	0.026505	1	2782	2782		5.6988	4.3769	1	26504	+		46866	23925	38859	38881	50327	50327					0.19556631024806848
QSSAPSTGLPL	11	Unmodified	_QSSAPSTGLPL_					0	0	0			REV__ENSG00000079432|ENST00000681038|CIC	REV__ENSG00000079432|ENST00000681038|CIC	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.3067016601562	2	529.279846	1056.54514	-0.99475	-0.0005265	-4.1067	-0.0021736	-5.1015	-0.0027001	529.2776777847395	103.58	0.71925	103.58	103.34	104.06	0					45	16	4	0	0	0	0.025306	1	11633	11633		45.022	13.067	1	890930	+		46867	17043	38860	38882	50328	50328					0.019128313724195323
QSSEEIKQL	9	Unmodified	_QSSEEIKQL_					0	0	0		AKAP9-CDK14|2|fusion;AKAP9-CDK14|1|fusion;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9;nc|ENSG00000127914|Q99996-4|AKAP9;ENST00000493453.1_1_7:91570251-91670224:+|nuORF	AKAP9-CDK14|2|fusion	AKAP9-CDK14|2|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	531.2782592773438	2	531.277303	1060.54005	-0.16795	-8.9226E-05	-0.25129	-0.00013351	-0.41924	-0.00022273	531.2770601777847	56.402	1.0863	56.402	56.094	57.18	0					67	25	4	0	0	0	0.0070314	2	4690	4662;4690		185.55	37.507	1	9519700			46868	58	38861	38883	50329;50330	50330					0.012205275098040147
QSSLLLQHLL	10	Unmodified	_QSSLLLQHLL_					0	0	0		TMEM214|p.E419Q|1|0.06|ENSG00000119777|chr2:27038494-27038494|G/C|missense_variant	TMEM214|p.E419Q|1|0.06|ENSG00000119777|chr2:27038494-27038494|G/C|missense_variant	TMEM214|p.E419Q|1|0.06|ENSG00000119777|chr2:27038494-27038494|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	576.3433837890625	2	576.342781	1150.67101	-0.45922	-0.00026467	0.44888	0.00025871	-0.010331	-5.954E-06	576.3429687798628	92.854	0.92009	91.685	91.341	92.261	-1.168					53	17	4	0	0	0	0.3094	3	8268	8268;8274;8281		79.713	11.398	1	353430			46869	32965	38862	38884	50331;50332;50333	50331					0.10169962948543798
QSSNLASSVI	10	Unmodified	_QSSNLASSVI_					0	0	0			REV__ENSG00000168795|ENST00000307750|ZBTB5	REV__ENSG00000168795|ENST00000307750|ZBTB5	MULTI-MSMS	OvCa99_classI_Rep5	1	503.26531982421875	2	503.264196	1004.51384	-0.34471	-0.00017348	-0.33276	-0.00016747	-0.67747	-0.00034095	503.2639803097501	60.097	1.3682	60.097	59.533	60.901	0					92	33	4	0	0	0	0.13777	1	5204	5204		104.06	2.8042	1	19859000	+		46870	21405	38863	38885	50334	50334					0.011762583383301717
QSSQGKVSL	9	Unmodified	_QSSQGKVSL_					0	0	0			REV__ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	REV__ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	467.2523498535156	2	467.253631	932.49271	-0.539	-0.00025185	0.43191	0.00020181	-0.10709	-5.0036E-05	467.2537229298831	41.674	0.77972	41.674	41.462	42.242	0					30	17	3	0	0	0	0.22035	1	2624	2624		72.879	2.063	1	764080	+		46871	15573	38864	38886	50335	50335					0.023762930294765283
QSSVKQQVE	9	Unmodified	_QSSVKQQVE_					0	0	0		nc|ENSG00000123106|Q7Z6B0-2|CCDC91;ENST00000535520.5_1_12:28412355-28702103:+|nuORF;ENSG00000123106|ENST00000536442|CCDC91;ENST00000540401.5_1_12:28421609-28702103:+|nuORF	nc|ENSG00000123106|Q7Z6B0-2|CCDC91	nc|ENSG00000123106|Q7Z6B0-2|CCDC91	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.2391357421875	2	516.769645	1031.52474	-1.3275	-0.00068604	0.83859	0.00043336	-0.48896	-0.00025268	516.7700250212245	34.407	0.65683	34.407	34.161	34.818	0					20	13	2	0	0	0	0.027418	1	1657	1657		65.465	0	1	304710			46872	3572	38865	38887	50336	50336					0.010236607126216768
QSSYALSFF	9	Unmodified	_QSSYALSFF_					0	0	0			REV__ENST00000438295.2_1_11:118133797-118134864:-|nuORF	REV__ENST00000438295.2_1_11:118133797-118134864:-|nuORF	MSMS	OvCa99_classI_Rep5	1	525.25439453125	2	525.250557	1048.48656	NaN	NaN	NaN	NaN	NaN	NaN	NaN	59.892	1	59.892	59.392	60.392	0								0	0	0	0.17298	1	5192	5192		44.377	3.8046	1		+		46873	25808	38866	38888	50337	50337					-0.03574225202055459
QSSYKTTKL	9	Unmodified	_QSSYKTTKL_					0	0	0			REV__ENST00000472637.5_1_3:112724385-112732818:-|nuORF	REV__ENST00000472637.5_1_3:112724385-112732818:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	528.2911376953125	2	528.290214	1054.56587	0.60514	0.00031969	-1.0506	-0.00055502	-0.44545	-0.00023533	528.2895188623011	120.01	1.0794	118.98	118.68	119.75	-1.0271					42	21	3	0	0	0	0.34132	1	9140	9140		58.23	1.7961	1	147030	+		46874	20858	38867	38889	50338	50338					0.040774217520947786
QSTLSSVAGL	10	Unmodified	_QSTLSSVAGL_					0	0	0		ENST00000274629.8_1_5:169805486-169810683:-|nuORF	ENST00000274629.8_1_5:169805486-169810683:-|nuORF	ENST00000274629.8_1_5:169805486-169810683:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	481.76092529296875	2	481.761289	961.508025	-0.6845	-0.00032976	0.58201	0.00028039	-0.10248	-4.9373E-05	481.7614841485614	64.314	1.18	64.314	63.854	65.034	0					53	28	3	0	0	0	0.15262	1	5836	5836		101.6	5.7855	1	10128000			46875	10021	38868	38890	50339	50339					0.025731598266588662
QSTPILAPL	9	Unmodified	_QSTPILAPL_					0	0	0			REV__ENSG00000136014|ENST00000258499|USP44	REV__ENSG00000136014|ENST00000258499|USP44	MULTI-MSMS	OvCa99_classI_Rep5	1	470.2808837890625	2	470.279118	938.543683	-0.72723	-0.000342	0.23594	0.00011096	-0.49129	-0.00023104	470.27899844156894	49.66	0.56997	49.66	49.418	49.988	0					28	12	3	0	0	0	0.51865	1	3727	3727		40.778	7.2626	1	1026300	+		46876	19350	38869	38891	50340	50340					0.0719524207431732
QSTPSIIAL	9	Unmodified	_QSTPSIIAL_					0	0	0			REV__nc|ENSG00000068784|Q8N5C6-2|SRBD1	REV__nc|ENSG00000068784|Q8N5C6-2|SRBD1	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.7585754394531	2	465.26875	928.522947	-0.30707	-0.00014287	2.1163	0.00098465	1.8092	0.00084179	465.2680460139391	77.839	0.52509	76.05	75.937	76.462	-1.7894					11	9	2	0	0	0	0.02744	1	6523	6523		44.377	6.5657	1	36447	+		46877	16858	38870	38892	50341	50341					0.055826516946467564
QSTSREDLI	9	Unmodified	_QSTSREDLI_					0	0	0		MDN1|p.E3571Vfs*18|1|0.11|ENSG00000112159|chr6:89690710-89690711|-/AGGGAAGGAGAGTCACTTA|frameshift_variant;MDN1|p.N5282Ifs*9|1|0.04|ENSG00000112159|chr6:89652262-89652263|-/GATTTTTCTGCCAACTA|frameshift_variant;MDN1|p.I5359Kfs*8|1|0.1|ENSG00000112159|chr6:89650154-89650155|-/CATAGCT|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1	MDN1|p.E3571Vfs*18|1|0.11|ENSG00000112159|chr6:89690710-89690711|-/AGGGAAGGAGAGTCACTTA|frameshift_variant	MDN1|p.E3571Vfs*18|1|0.11|ENSG00000112159|chr6:89690710-89690711|-/AGGGAAGGAGAGTCACTTA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	524.7667236328125	2	524.767103	1047.51965	0.20193	0.00010597	-2.3635	-0.0012403	-2.1616	-0.0011343	524.7656821211727	129.4	1.9283	128.29	127.55	129.48	-1.1121					82	38	4	0	0	0	0.53483	1	10244	10244		39.253	2.0937	1	121170			46878	2882	38871	38893	50342	50342					-0.0022064315000989154
QSVADERIHL	10	Unmodified	_QSVADERIHL_					0	0	0			REV__ENSG00000215131|ENST00000437192|C16orf90	REV__ENSG00000215131|ENST00000437192|C16orf90	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3106079101562	2	584.309469	1166.60439	-0.29593	-0.00017291	3.7582	0.002196	3.4623	0.0020231	584.3116828234909	128.57	0.79895	127.11	126.85	127.64	-1.4565					39	15	4	0	0	0	0.52439	1	12296	12296		51.193	7.0759	1	76644	+		46879	23311	38872	38894	50343	50343					0.02774727386622544
QSVADERIHL	10	Unmodified	_QSVADERIHL_					0	0	0			REV__ENSG00000215131|ENST00000437192|C16orf90	REV__ENSG00000215131|ENST00000437192|C16orf90	MULTI-MATCH	OvCa9_classI_Rep2	2		2	584.309469	1166.60439	0.78948	0.0004613	2.3677	0.0013835	3.1572	0.0018448	584.3109262648512	127.3	0.74246	127.06	126.84	127.58	-0.2359	-0.078278	-0.0011342	NaN	51.193	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65356	+		46880	23311	38872	38894							0.02774727386622544
QSVADERIHL	10	Unmodified	_QSVADERIHL_					0	0	0			REV__ENSG00000215131|ENST00000437192|C16orf90	REV__ENSG00000215131|ENST00000437192|C16orf90	MULTI-MATCH	OvCa9_classI_Rep3	3		2	584.309469	1166.60439	-0.42604	-0.00024894	3.6294	0.0021207	3.2034	0.0018718	584.3115411590478	128.33	0.83852	127.24	127.02	127.86	-1.0933	0.10311	0.00034034	NaN	51.193	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46330	+		46881	23311	38872	38894							0.02774727386622544
QSVADERIHL	10	Unmodified	_QSVADERIHL_					0	0	0			REV__ENSG00000215131|ENST00000437192|C16orf90	REV__ENSG00000215131|ENST00000437192|C16orf90	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	584.309469	1166.60439	-0.29593	-0.00017291	3.7582	0.002196	3.4623	0.0020231	584.3116828234909	128.57	0.79895	127.11	126.85	127.64	-1.4565	-0.024837	0.00049085	NaN	51.193	39	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76644	+		46882	23311	38872	38894							0.02774727386622544
QSVIHSRFS	9	Unmodified	_QSVIHSRFS_					0	0	0			REV__ENSG00000180884|ENST00000404801|ZNF792	REV__ENSG00000180884|ENST00000404801|ZNF792	MULTI-SECPEP	OvCa9_classI_Rep2	2	531.7378540039062	2	530.780348	1059.54614	0.31494	0.00016716	-1.3478	-0.00071537	-1.0328	-0.00054821	530.7795170287175	129.26	1.2856	129.03	128.38	129.66	-0.22697					32	25	2	0	0	0	0.027462	1	12750	12750		10.265	0	1	10018	+		46883	22202	38873	38895	50344	50344					0.018750905319848243
QSVKLFKAI	9	Unmodified	_QSVKLFKAI_					0	0	0			REV__ENSG00000155660|ENST00000652332|PDIA4	REV__ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3242797851562	2	517.32386	1032.63317	0.31361	0.00016224	-0.22893	-0.00011843	0.084683	4.3809E-05	517.3237178370956	82.824	2.9871	81.225	80.854	83.841	-1.5988					110	59	2	0	0	0	0.2422	1	7097	7097		69.628	0	1	2459000	+		46884	20434	38874	38896	50345	50345					0.11815496753706611
QSVKLFKAI	9	Unmodified	_QSVKLFKAI_					0	0	0			REV__ENSG00000155660|ENST00000652332|PDIA4	REV__ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	OvCa9_classI_Rep3	3	517.3255004882812	2	517.32386	1032.63317	-0.49455	-0.00025584	2.8399	0.0014691	2.3453	0.0012133	517.324549544396	83.847	3.2794	81.586	81.067	84.346	-2.261					206	67	6	0	0	0	0.1149	1	4841	4841		93.143	13.431	1	2886700	+		46885	20434	38874	38896	50346	50346					0.11815496753706611
QSVSRLQSI	9	Unmodified	_QSVSRLQSI_					0	0	0		ENSG00000080839|ENST00000373664|RBL1;nc|ENSG00000080839|P28749-2|RBL1	ENSG00000080839|ENST00000373664|RBL1	ENSG00000080839|ENST00000373664|RBL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.8047180175781	2	509.288005	1016.56146	-0.010312	-5.252E-06	-2.9876	-0.0015215	-2.9979	-0.0015268	509.28656515348115	105.1	0.69986	105.1	104.83	105.53	0					23	15	2	0	0	0	0.027418	1	11804	11804		56.434	0	1	135660			46886	1644	38875	38897	50347	50347					0.05383957329195255
QSVSRLQSI	9	Unmodified	_QSVSRLQSI_					0	0	0		ENSG00000080839|ENST00000373664|RBL1;nc|ENSG00000080839|P28749-2|RBL1	ENSG00000080839|ENST00000373664|RBL1	ENSG00000080839|ENST00000373664|RBL1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	509.288005	1016.56146	-0.56005	-0.00028523	2.5496	0.0012985	1.9895	0.0010132	509.2888050116682	105.3	0.54768	104.87	104.65	105.2	-0.43642	-0.087417	0.0018865	NaN	56.434	17	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20203			46887	1644	38875	38897							0.05383957329195255
QSVSRLQSI	9	Unmodified	_QSVSRLQSI_					0	0	0		ENSG00000080839|ENST00000373664|RBL1;nc|ENSG00000080839|P28749-2|RBL1	ENSG00000080839|ENST00000373664|RBL1	ENSG00000080839|ENST00000373664|RBL1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	509.288005	1016.56146	-1.3229	-0.00067375	4.4984	0.002291	3.1755	0.0016172	509.29008810832886	106.77	0.36941	104.89	104.75	105.12	-1.8785	-0.064418	0.0038715	NaN	56.434	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26002			46888	1644	38875	38897							0.05383957329195255
QSWLSLLS	8	Unmodified	_QSWLSLLS_					0	0	0			REV__PKHD1|p.P2004Hfs*49|1|0.03|ENSG00000170927|chr6:51934220-51934221|-/T|frameshift_variant	REV__PKHD1|p.P2004Hfs*49|1|0.03|ENSG00000170927|chr6:51934220-51934221|-/T|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.23004150390625	2	467.255643	932.496732	-0.78695	-0.00036771	1.0273	0.00048002	0.24036	0.00011231	467.25731771936233	37.182	0.32144	37.182	37.023	37.344	0					9	6	2	0	0	0	0.028476	1	2008	2008		27.882	0	1	78702	+		46889	29299	38876	38898	50348	50348					0.027783825231949777
QSWYKDLK	8	Unmodified	_QSWYKDLK_					0	0	0			REV__ENST00000510488.1_1_3:141189685-141190057:-|nuORF	REV__ENST00000510488.1_1_3:141189685-141190057:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.84814453125	2	534.279649	1066.54475	-1.3246	-0.00070772	-1.5701	-0.00083886	-2.8947	-0.0015466	534.2772147992431	46.788	0.2065	43.715	43.552	43.759	-3.0724					6	3	2	0	0	0	0.028476	1	2475	2475		37.159	4.3467	1	16305	+		46890	26941	38877	38899	50349	50349					0.014134564432197294
QTADVVLI	8	Unmodified	_QTADVVLI_					0	0	0			REV__tr|A0A7D7A1Q7|A0A7D7A1Q7_9CLOTElongationfactor4OS=ClostridiumintestinaleOX=36845GN=lepAPE=3SV=1	REV__tr|A0A7D7A1Q7|A0A7D7A1Q7_9CLOTElongationfactor4OS=ClostridiumintestinaleOX=36845GN=lepAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	428.76171875	2	429.750193	857.485833	0.19571	8.4105E-05	0.23944	0.0001029	0.43515	0.000187	429.7502075966041	70.594	0.35287	70.594	70.447	70.8	0					14	8	2	0	0	0	0.028476	1	6794	6794		31.955	0	1	366610	+		46891	32507	38878	38900	50350	50350					0.05138980148910832
QTALSPPTCI	10	Unmodified	_QTALSPPTCI_					0	0	0		ENST00000544807.6_1_14:88452910-88454505:-|nuORF	ENST00000544807.6_1_14:88452910-88454505:-|nuORF	ENST00000544807.6_1_14:88452910-88454505:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.7461547851562	2	515.765517	1029.51648	-0.12428	-6.4101E-05	-1.7215	-0.00088791	-1.8458	-0.00095202	515.7647370870752	95.414	1.0432	93.519	93.161	94.204	-1.8956					30	20	2	0	0	0	0.026734	1	6289	6289		39.253	3.6345	1	48833			46892	13511	38879	38901	50351	50351					0.002903904716276884
QTALSPPTCI	10	Unmodified	_QTALSPPTCI_					0	0	0		ENST00000544807.6_1_14:88452910-88454505:-|nuORF	ENST00000544807.6_1_14:88452910-88454505:-|nuORF	ENST00000544807.6_1_14:88452910-88454505:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.765517	1029.51648	-0.2474	-0.0001276	-0.33276	-0.00017162	-0.58016	-0.00029923	515.7649483551166	94.73	0.93431	93.631	93.361	94.296	-1.0995	0.03631	0.00044812	NaN	22.58	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40881			46893	13511	38879	38901							0.002903904716276884
QTAPHLSQ	8	Unmodified	_QTAPHLSQ_					0	0	0		PAXIP1|p.A840Lfs*22|1|0.08|ENSG00000157212|chr7:154957256-154957256|T/-|frameshift_variant;PAXIP1|p.G890Efs*52|1|0.09|ENSG00000157212|chr7:154954407-154954408|-/T|frameshift_variant;ENSG00000157212|ENST00000404141|PAXIP1;ENST00000475066.1_1_7:154759501-154775093:-|nuORF;nc|ENSG00000157212|Q6ZW49-2|PAXIP1;nc|ENSG00000157212|Q6ZW49-1|PAXIP1;ENST00000457196.5_1_7:154735861-154782774:-|nuORF	PAXIP1|p.A840Lfs*22|1|0.08|ENSG00000157212|chr7:154957256-154957256|T/-|frameshift_variant	PAXIP1|p.A840Lfs*22|1|0.08|ENSG00000157212|chr7:154957256-154957256|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	440.7495422363281	2	441.227417	880.44028	-1.2933	-0.00057062	2.7676	0.0012211	1.4743	0.00065051	441.2280259292325	43.896	0.81464	40.889	40.273	41.088	-3.0074					30	15	3	0	0	0	0.028476	1	2117	2117		32.812	2.3088	1	26471			46894	5882	38880	38902	50352	50352					-0.004722453134831994
QTARNVNNN	9	Unmodified	_QTARNVNNN_					0	0	0			REV__nc|ENSG00000053747|Q16787-3|LAMA3	REV__nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.298828125	2	515.754861	1029.49517	-0.56136	-0.00028952	3.7144	0.0019157	3.153	0.0016262	515.7568966195224	51.587	0.4532	51.587	51.418	51.871	0					20	10	3	0	0	0	0.027462	1	3988	3988		30.318	0	1	314070	+		46895	16695	38881	38903	50353	50353					-0.018398585128579725
QTAVAELRA	9	Unmodified	_QTAVAELRA_					0	0	0		ENSG00000197093|ENST00000360039|GAL3ST4;ENST00000423751.2_1_7:99757553-99764836:-|nuORF;nc|ENSG00000197093|Q96RP7-2|GAL3ST4	ENSG00000197093|ENST00000360039|GAL3ST4;ENST00000423751.2_1_7:99757553-99764836:-|nuORF	ENST00000423751.2_1_7:99757553-99764836:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2931213378906	2	479.769448	957.524344	3.1121	0.0014931	3.1803	0.0015258	6.2924	0.0030189	479.7708219749081	89.685	0.45406	89.685	89.394	89.848	0					16	10	2	0	0	0	0.027462	1	9552	9552		27.882	1.1893	1	539880			46896	8675;11706	38882	38904	50354	50354					0.04388285783431911
QTAWEKKQDL	10	Unmodified	_QTAWEKKQDL_					0	0	0			REV__nc|ENSG00000150676|Q8IWF9-3|CCDC83	REV__nc|ENSG00000150676|Q8IWF9-3|CCDC83	MULTI-MSMS	OvCa99_classI_Rep5	1	416.22149658203125	3	416.21906	1245.63535	1.9033	0.00079219	3.4573	0.001439	5.3606	0.0022312	416.22036929045566	83.164	0.76477	83.164	82.906	83.671	0					47	17	4	0	0	0	0.55109	1	8641	8641		37.6	0	1	1592400	+		46897	28924	38883	38905	50355	50355					0.0223588070086862
QTCGELMFSLE	11	Unmodified	_QTCGELMFSLE_					0	0	0		ENSG00000254986|ENST00000531863|DPP3;nc|ENSG00000254986|Q9NY33-4|DPP3;nc|ENSG00000254986|Q9NY33-2|DPP3	ENSG00000254986|ENST00000531863|DPP3	ENSG00000254986|ENST00000531863|DPP3	MULTI-MSMS	OvCa9_classI_Rep2	2	629.2777709960938	2	629.278131	1256.54171	-2.0177	-0.0012697	1.8196	0.001145	-0.1981	-0.00012466	629.2792052758709	117.72	2.1801	117.57	117.19	119.37	-0.14755					115	43	5	0	0	0	0.65063	1	11272	11272		40.058	0.80534	1	400120			46898	9450	38884	38906	50356	50356					-0.07629922788078147
QTCPELLLLIS	11	Unmodified	_QTCPELLLLIS_					0	0	0		nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF	nc|ENSG00000006744|Q9BQ52-2|ELAC2	nc|ENSG00000006744|Q9BQ52-2|ELAC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	615.4057006835938	2	615.344132	1228.67371	0.87691	0.0005396	3.4462	0.0021206	4.3231	0.0026602	615.346230535201	151.18	0.93922	151.18	150.89	151.83	0					45	18	3	0	0	0	0.025406	1	17732	17732		46.457	0	1	174890			46899	12594	38885	38907	50357	50357					0.06852050291195155
QTCWTLLALKL	11	Unmodified	_QTCWTLLALKL_					0	0	0			REV__ENST00000534671.1_1_11:9802092-9829598:+|nuORF	REV__ENST00000534671.1_1_11:9802092-9829598:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	645.3634643554688	2	645.367941	1288.72133	-1.1906	-0.00076838	-4.4185	-0.0028516	-5.6091	-0.0036199	645.3648820929905	114.84	1.0363	114.72	114.4	115.44	-0.11777					48	20	3	0	0	0	0.68757	1	10932	10932		33.922	3.3528	1	121570	+		46900	27271	38886	38908	50358	50358					0.08851749281984667
QTDFKVLV	8	Unmodified	_QTDFKVLV_					0	0	0			REV__ENSG00000089248|ENST00000261735|ERP29	REV__ENSG00000089248|ENST00000261735|ERP29	MULTI-MSMS	OvCa99_classI_Rep5	1	475.27252197265625	2	475.271293	948.528032	1.1998	0.00057023	0.72964	0.00034678	1.9294	0.00091701	475.27149295966217	131.42	0.51794	131.42	131.2	131.72	0					29	10	4	0	0	0	0.39692	1	15257	15257		88.643	5.3557	1	288350	+		46901	17204	38887	38909	50359	50359					0.05170955557287016
QTDGIQKII	9	Unmodified	_QTDGIQKII_					0	0	0		nc|ENSG00000086991|Q9NPH5-3|NOX4;nc|ENSG00000086991|Q9NPH5-4|NOX4;nc|ENSG00000086991|Q9NPH5-2|NOX4;nc|ENSG00000086991|Q9NPH5-9|NOX4;nc|ENSG00000086991|Q9NPH5-6|NOX4;nc|ENSG00000086991|Q9NPH5-8|NOX4;ENSG00000086991|ENST00000263317|NOX4	nc|ENSG00000086991|Q9NPH5-3|NOX4	nc|ENSG00000086991|Q9NPH5-3|NOX4	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.2910461425781	2	508.292756	1014.57096	-0.45487	-0.00023121	-0.036204	-1.8402E-05	-0.49108	-0.00024961	508.2925640256571	116.78	1.6739	115.41	115.09	116.77	-1.3645					67	31	4	0	0	0	0.35444	1	10910	10910		56.721	7.2795	1	313250			46902	1757	38888	38910	50360	50360					0.06425725614712974
QTDIDGILPL	10	Unmodified	_QTDIDGILPL_					0	0	0			REV__tr|A0A553SJ09|A0A553SJ09_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15880PE=4SV=1	REV__tr|A0A553SJ09|A0A553SJ09_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15880PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	543.3473510742188	2	542.797872	1083.58119	-0.85251	-0.00046274	0.041393	2.2468E-05	-0.81112	-0.00044027	542.7983023243402	64.35	0.73814	61.625	61.337	62.076	-2.7245					17	13	2	0	0	0	0.026493	1	4921	4921		54.776	0	1	24351	+		46903	29952	38889	38911	50361	50361					0.04274288549299854
QTDQMIVTL	9	Unmodified	_QTDQMIVTL_					0	0	0			REV__tr|A0A7D6VR40|A0A7D6VR40_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17775PE=4SV=1	REV__tr|A0A7D6VR40|A0A7D6VR40_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17775PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	525.2721557617188	2	524.7708	1047.52705	-0.70488	-0.0003699	1.6358	0.00085842	0.93093	0.00048852	524.7711176589954	99.329	2.4811	98.498	98.119	100.6	-0.83052					140	49	4	0	0	0	0.51865	1	9079	9079		40.778	2.9666	1	555820	+		46904	31383	38890	38912	50362	50362					0.005183731260785862
QTDTLTQM	8	Unmodified	_QTDTLTQM_					0	0	0		nc|ENSG00000145113|Q99102-9|MUC4;nc|ENSG00000145113|Q99102-2|MUC4;nc|ENSG00000145113|Q99102-15|MUC4;nc|ENSG00000145113|Q99102-11|MUC4;nc|ENSG00000145113|Q99102-8|MUC4;nc|ENSG00000145113|Q99102-7|MUC4;nc|ENSG00000145113|Q99102-5|MUC4;nc|ENSG00000145113|Q99102-16|MUC4;nc|ENSG00000145113|Q99102-3|MUC4;nc|ENSG00000145113|Q99102-17|MUC4;nc|ENSG00000145113|Q99102-10|MUC4;ENSG00000145113|ENST00000463781|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	nc|ENSG00000145113|Q99102-9|MUC4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.21087646484375	2	469.2184	936.422247	0.61338	0.00028781	-1.4407	-0.00067598	-0.82727	-0.00038817	469.21763050431326	112.45	1.0012	110.94	110.74	111.74	-1.5111					31	19	2	0	0	0	0.028476	1	10440	10440		47.657	8.4045	1	130430			46905	5205	38891	38913	50363	50363					-0.048507483504977245
QTEIGGVEYL	10	Unmodified	_QTEIGGVEYL_					0	0	0		tr|A0A553SG37|A0A553SG37_NIACIIgdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10015PE=4SV=1	tr|A0A553SG37|A0A553SG37_NIACIIgdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10015PE=4SV=1	tr|A0A553SG37|A0A553SG37_NIACIIgdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10015PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.8229370117188	2	554.779679	1107.5448	-0.88735	-0.00049228	0.86221	0.00047833	-0.025143	-1.3949E-05	554.780141290428	72.3	0.48874	68.864	68.677	69.165	-3.4353					11	9	2	0	0	0	0.026849	1	5579	5579		32.812	1.2826	1	25691			46906	33113	38892	38914	50364	50364					-0.00466588347421748
QTEKQKKLT	9	Unmodified	_QTEKQKKLT_					0	0	0		ENSG00000172352|ENST00000382407|CDY1B;ENSG00000182415|ENST00000250838|CDY2A;ENSG00000129873|ENST00000382867|CDY2B;ENSG00000172288|ENST00000306609|CDY1	ENSG00000172352|ENST00000382407|CDY1B	ENSG00000172352|ENST00000382407|CDY1B	MULTI-MSMS	OvCa99_classI_Rep5	1	552.3245239257812	2	552.324588	1102.63462	-0.60494	-0.00033412	-0.41558	-0.00022954	-1.0205	-0.00056366	552.3243657213837	29.161	0.94672	29.161	28.789	29.735	0					55	18	5	0	0	0	0.12515	1	1006	1006		90.37	0	1	4186100			46907	3945	38893	38915	50365	50365					0.08741086051782077
QTERLSTG	8	Unmodified	_QTERLSTG_					0	0	0			REV__nc|ENSG00000183530|Q5THK1-2|PRR14L	REV__nc|ENSG00000183530|Q5THK1-2|PRR14L	MULTI-MSMS	OvCa99_classI_Rep5	1	446.234130859375	2	446.230156	890.445759	1.1877	0.00052999	3.1906	0.0014238	4.3783	0.0019537	446.23134164397203	161.63	1.5688	161.63	160.91	162.48	0					58	30	3	0	0	0	0.6962	1	18946	18946		44.117	5.3107	1	63170	+		46908	22367	38894	38916	50366	50366					-0.0038456652167724314
QTERLSTG	8	Unmodified	_QTERLSTG_					0	0	0			REV__nc|ENSG00000183530|Q5THK1-2|PRR14L	REV__nc|ENSG00000183530|Q5THK1-2|PRR14L	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	446.230156	890.445759	1.1877	0.00052999	3.1906	0.0014238	4.3783	0.0019537	446.23134164397203	161.63	1.5688	161.63	160.91	162.48	0	0	0	NaN	44.117	58	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63170	+		46909	22367	38894	38916							-0.0038456652167724314
QTEWPQLL	8	Unmodified	_QTEWPQLL_					0	0	0			REV__nc|ENSG00000124159|O95460-4|MATN4	REV__nc|ENSG00000124159|O95460-4|MATN4	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7670593261719	2	507.766374	1013.5182	3.7041	0.0018808	-3.6419	-0.0018492	0.06224	3.1603E-05	507.76435878537296	132.17	1.6916	130.67	129.94	131.63	-1.5015					93	33	4	0	0	0	0.66057	1	12699	12699		51.335	1.7994	1	152800	+		46910	18668	38895	38917	50367	50367					0.01197767551900597
QTFAVMFAN	9	Unmodified	_QTFAVMFAN_					0	0	0		tr|A0A553SPT7|A0A553SPT7_NIACIRNAmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_08070PE=4SV=1	tr|A0A553SPT7|A0A553SPT7_NIACIRNAmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_08070PE=4SV=1	tr|A0A553SPT7|A0A553SPT7_NIACIRNAmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_08070PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.3125	2	514.747127	1027.4797	-0.90289	-0.00046476	1.2775	0.00065761	0.37466	0.00019285	514.747037688937	53.127	0.30244	49.919	49.795	50.097	-3.208					8	5	2	0	0	0	0.027462	1	3213	3213		26.693	0	1	11614			46911	34083	38896	38918	50368	50368					-0.032938613542683015
QTFFLLTL	8	Unmodified	_QTFFLLTL_					0	0	0		tr|A0A553SRS6|A0A553SRS6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01530PE=4SV=1	tr|A0A553SRS6|A0A553SRS6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01530PE=4SV=1	tr|A0A553SRS6|A0A553SRS6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01530PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.2522277832031	2	491.784036	981.553519	-0.45597	-0.00022424	0.76313	0.0003753	0.30716	0.00015106	491.7842614244644	56.227	0.52737	56.227	55.932	56.459	0					19	12	2	0	0	0	0.028476	1	4675	4675		14.137	0	1	207170			46912	34292	38897	38919	50369	50369					0.062004300797070755
QTFLSIALVL	10	Unmodified	_QTFLSIALVL_					0	0	0			REV__sp|F5HAQ7|UL135_HCMVMProteinUL135OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL135PE=1SV=1	REV__sp|F5HAQ7|UL135_HCMVMProteinUL135OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL135PE=1SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.8275756835938	2	552.8368	1103.65905	1.7909	0.00099005	-0.16415	-9.075E-05	1.6267	0.0008993	552.8366445145497	118.41	0.5163	118.41	118.2	118.72	0					17	10	2	0	0	0	0.027028	1	13550	13550		12.812	0	1	81042	+		46913	29388	38898	38920	50370	50370					0.11136346205307746
QTFNVEFNL	9	Unmodified	_QTFNVEFNL_					0	0	0		nc|ENSG00000130856|Q9UL36|ZNF236;ENSG00000130856|ENST00000320610|ZNF236;ZNF236|p.C746Lfs*13|1|0.08|ENSG00000130856|chr18:76905359-76905360|-/CTAGCACTTTGGAAGGCCGAGG|frameshift_variant;ZNF236|p.L805Sfs*67|1|0.04|ENSG00000130856|chr18:76908440-76908441|-/AGTTCATTGCTGAATTCATTGTTCAT|frameshift_variant;nc|ENSG00000130856|Q9UL36-2|ZNF236	nc|ENSG00000130856|Q9UL36|ZNF236	nc|ENSG00000130856|Q9UL36|ZNF236	MULTI-SECPEP	OvCa9_classI_Rep2	2	555.7979736328125	2	556.274564	1110.53457	0.85042	0.00047307	-0.38681	-0.00021517	0.46361	0.0002579	556.2763106641488	66.715	0.14919	64.019	63.915	64.064	-2.6958					4	2	2	0	0	0	0.027453	1	5188	5188		45.972	3.5761	1	3721.1			46914	4022	38899	38921	50371	50371					-0.016271512820139833
QTGFMHHPSF	10	Unmodified	_QTGFMHHPSF_					0	0	0		ENSG00000153107|ENST00000341068|ANAPC1;ENST00000454465.1_1_2:87355723-87398314:+|nuORF	ENSG00000153107|ENST00000341068|ANAPC1	ENSG00000153107|ENST00000341068|ANAPC1	MULTI-SECPEP	OvCa9_classI_Rep2	2	594.8452758789062	2	594.766383	1187.51821	-0.41505	-0.00024686	2.6932	0.0016019	2.2782	0.001355	594.7678586704859	78.763	0.29053	77.024	76.855	77.146	-1.7398					7	5	2	0	0	0	0.026931	1	6606	6606		30.318	0	1	7066.1			46915	5660	38900	38922	50372	50372					-0.06804555719759264
QTGTVLSLLL	10	Unmodified	_QTGTVLSLLL_					0	0	0			REV__nc|ENSG00000184647|Q6UWB4-2|PRSS55	REV__nc|ENSG00000184647|Q6UWB4-2|PRSS55	MULTI-MSMS	OvCa99_classI_Rep5	1	522.8192138671875	2	522.818607	1043.62266	2.2395	0.0011708	-0.059573	-3.1146E-05	2.1799	0.0011397	522.8184657088578	86.574	0.98746	86.574	86.35	87.338	0					50	23	4	0	0	0	0.49595	1	9122	9122		54.722	1.3709	1	4617200	+		46916	22445	38901	38923	50373	50373					0.10259469308630287
QTHWTLDK	8	Unmodified	_QTHWTLDK_					0	0	0		nc|ENSG00000149781|Q86UX7|FERMT3;ENSG00000149781|ENST00000345728|FERMT3	nc|ENSG00000149781|Q86UX7|FERMT3	nc|ENSG00000149781|Q86UX7|FERMT3	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.800537109375	2	514.761623	1027.50869	-0.4642	-0.00023895	-3.4951	-0.0017991	-3.9593	-0.0020381	514.7596904236684	29.76	0.39944	29.76	29.586	29.986	0					10	7	2	0	0	0	0.028476	1	1080	1080		35.618	0	1	87555			46917	15087	38902	38924	50374	50374					-0.003960007336445415
QTIFSVFH	8	Unmodified	_QTIFSVFH_					0	0	0		ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	ENSG00000174405|ENST00000442234|LIG4	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.7554626464844	2	489.75581	977.497067	0.96491	0.00047257	-0.20521	-0.0001005	0.7597	0.00037207	489.75553304007275	33.559	2.5913	30.771	30.259	32.85	-2.7881					111	51	3	0	0	0	0.73938	1	916	916		31.955	1.4512	1	83915			46918	7461	38903	38925	50375	50375					0.007418022430556448
QTIIILNNR	9	Unmodified	_QTIIILNNR_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8206176757812	2	542.827298	1083.64004	0.43981	0.00023874	0.75923	0.00041213	1.199	0.00065087	542.8271790845737	74.13	0.34098	74.13	73.945	74.286	0					12	8	2	0	0	0	0.027462	1	7297	7297		25.574	0	1	386930			46919	3083	38904	38926	50376	50376					0.10156809634258934
QTIITGIRKDL	11	Unmodified	_QTIITGIRKDL_					0	0	0			REV__tr|A0A7D6VQL8|A0A7D6VQL8_9CLOTNucleosidetriphosphatepyrophosphohydrolaseOS=ClostridiumintestinaleOX=36845GN=mazGPE=4SV=1	REV__tr|A0A7D6VQL8|A0A7D6VQL8_9CLOTNucleosidetriphosphatepyrophosphohydrolaseOS=ClostridiumintestinaleOX=36845GN=mazGPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	420.2413330078125	3	419.922355	1256.74524	-0.68284	-0.00028674	0.97387	0.00040895	0.29103	0.00012221	419.92255121223576	58.413	0.95332	55.021	54.752	55.705	-3.392					34	18	3	0	0	0	0.025955	1	3915	3915		5.6988	0	1	87754	+		46920	31337	38905	38927	50377	50377					0.1271330604004106
QTIKQTKGTI	10	Unmodified	_QTIKQTKGTI_					0	0	0			REV__ENST00000362042.7_1_17:46137782-46138226:+|nuORF	REV__ENST00000362042.7_1_17:46137782-46138226:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	559.3338012695312	2	559.332413	1116.65027	0.022736	1.2717E-05	1.9367	0.0010832	1.9594	0.001096	559.3338875168262	104.92	4.6529	104.34	102.39	107.04	-0.57639					237	93	5	0	0	0	0.39718	3	9741	9741;9777;9783		68.846	12.255	1	7580000	+		46921	24873	38906	38928	50378;50379;50380	50378					0.09661372568848492
QTIKQTKGTI	10	Unmodified	_QTIKQTKGTI_					0	0	0			REV__ENST00000362042.7_1_17:46137782-46138226:+|nuORF	REV__ENST00000362042.7_1_17:46137782-46138226:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.3343505859375	2	559.332413	1116.65027	0.1153	6.449E-05	2.4074	0.0013466	2.5227	0.001411	559.3338934185311	106.4	2.878	104.38	103.6	106.47	-2.0161					138	56	4	0	0	0	0.38315	1	9716	9716		70.816	3.3225	1	9929600	+		46922	24873	38906	38928	50381	50381					0.09661372568848492
QTIPRDVN	8	Unmodified	_QTIPRDVN_					0	0	0		nc|ENSG00000161542|Q14558|PRPSAP1;ENSG00000161542|ENST00000446526|PRPSAP1	nc|ENSG00000161542|Q14558|PRPSAP1	nc|ENSG00000161542|Q14558|PRPSAP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.29351806640625	2	471.753798	941.493044	-0.046079	-2.1738E-05	-0.25121	-0.00011851	-0.29729	-0.00014025	471.7537590653228	81.706	1.2123	79.023	78.718	79.93	-2.683					35	24	2	0	0	0	0.028476	1	6823	6823		39.253	0	1	104080			46923	6131	38907	38929	50382	50382					0.019957127493285043
QTIVDRRLVR	10	Unmodified	_QTIVDRRLVR_					0	0	0			REV__ENSG00000244623|ENST00000316368|OR2AE1	REV__ENSG00000244623|ENST00000316368|OR2AE1	MSMS	OvCa9_classI_Rep4_	4	628.3812866210938	2	628.383303	1254.75205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	151.03	1	149.59	149.09	150.09	-1.4344								0	0	0	0.13748	1	14925	14925		26.693	1.1189	1		+		46924	23479	38908	38930	50383	50383					0.13486663711250912
QTIVDRRLVR	10	Unmodified	_QTIVDRRLVR_					0	0	0			REV__ENSG00000244623|ENST00000316368|OR2AE1	REV__ENSG00000244623|ENST00000316368|OR2AE1	MSMS	OvCa9_classI_Rep4_	4	628.3816528320312	2	628.383303	1254.75205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	151.15	1	149.72	149.22	150.22	-1.4344								0	0	0	0.14189	1	14938	14938		34.173	0.25091	1		+		46925	23479	38908	38930	50384	50384					0.13486663711250912
QTIVSIIVI	9	Unmodified	_QTIVSIIVI_					0	0	0			REV__DNAJC18|p.A290Lfs*10|1|0.08|ENSG00000170464|chr5:139420138-139420138|T/-|frameshift_variant	REV__DNAJC18|p.A290Lfs*10|1|0.08|ENSG00000170464|chr5:139420138-139420138|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.3061218261719	2	493.318243	984.621933	0.87215	0.00043025	-3.8137	-0.0018814	-2.9415	-0.0014511	493.3162563442904	32.504	1.0687	29.808	29.482	30.551	-2.6954					37	24	2	0	0	0	0.027462	1	844	844		24.203	1.1603	1	32522	+		46926	16321	38909	38931	50385	50385					0.12900674659567812
QTKEALPHDC	10	Unmodified	_QTKEALPHDC_					0	0	0			REV__nc|ENSG00000140386|Q9BY12-3|SCAPER	REV__nc|ENSG00000140386|Q9BY12-3|SCAPER	MULTI-SECPEP	OvCa9_classI_Rep2	2	571.3157958984375	2	571.268955	1140.52336	-1.2839	-0.00073347	0.89701	0.00051243	-0.38692	-0.00022103	571.2694568571364	75.635	0.72008	73.781	73.323	74.044	-1.854					19	13	2	0	0	0	0.026915	1	6198	6198		20.947	0	1	17137	+		46927	19665	38910	38932	50386	50386					-0.04128296647786556
QTKERRKDE	9	Unmodified	_QTKERRKDE_					0	0	0			REV__ENST00000371162.4_1_2:111995636-111996092:-|nuORF	REV__ENST00000371162.4_1_2:111995636-111996092:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	594.828369140625	2	595.317825	1188.6211	-0.88222	-0.0005252	-1.0283	-0.00061219	-1.9106	-0.0011374	595.3160661345069	77.262	1.2531	75.473	74.998	76.251	-1.7894					49	23	3	0	0	0	0.027462	1	6367	6367		42.864	0	1	32769	+		46928	24977	38911	38933	50387	50387					0.03433228272569977
QTKGALQK	8	Unmodified	_QTKGALQK_					0	0	0		ENSG00000169427|ENST00000520439|KCNK9	ENSG00000169427|ENST00000520439|KCNK9	ENSG00000169427|ENST00000520439|KCNK9	MULTI-MSMS	OvCa9_classI_Rep4_	4	437.2611999511719	2	437.261259	872.507966	-1.1543	-0.00050472	0.65519	0.00028649	-0.49909	-0.00021823	437.2615353408378	50.352	1.8364	47.211	46.871	48.707	-3.1416					114	35	5	0	0	0	0.36941	1	2945	2945		94.006	0	1	3040600			46929	7009	38912	38934	50388	50388					0.0666120461733044
QTKIAVAASI	10	Unmodified	_QTKIAVAASI_					0	0	0		tr|A0A7D6W2C4|A0A7D6W2C4_9CLOTDUF1232domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05645PE=4SV=1	tr|A0A7D6W2C4|A0A7D6W2C4_9CLOTDUF1232domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05645PE=4SV=1	tr|A0A7D6W2C4|A0A7D6W2C4_9CLOTDUF1232domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05645PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	501.3051452636719	2	501.303124	1000.5917	-0.55944	-0.00028045	0.27819	0.00013946	-0.28125	-0.00014099	501.30309772223353	49.254	0.73667	49.254	49.031	49.768	0					35	16	3	0	0	0	0.22511	1	3662	3662		90.601	0	1	2100500			46930	35425	38913	38935	50389	50389					0.09142315994370165
QTKKEKATL	9	Unmodified	_QTKKEKATL_					0	0	0			REV__nc|ENSG00000101972|Q8N3U4|STAG2	REV__nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2789306640625	2	523.813856	1045.61316	0.10985	5.754E-05	2.3881	0.0012509	2.4979	0.0013084	523.8152920015632	72.134	0.54187	72.134	71.749	72.291	0					16	12	2	0	0	0	0.027462	1	7002	7002		18.262	0	1	194800	+		46931	17530	38914	38936	50390	50390					0.0921770102308983
QTKKKQRW	8	Unmodified	_QTKKKQRW_					0	0	0			REV__SIDT2|p.L327Q|1|0.15|ENSG00000149577|chr11:117186601-117186601|T/A|missense_variant	REV__SIDT2|p.L327Q|1|0.15|ENSG00000149577|chr11:117186601-117186601|T/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.8314208984375	2	551.827632	1101.64071	0.66152	0.00036504	2.7527	0.001519	3.4142	0.0018841	551.8291885360787	32.876	1.2809	30.18	29.716	30.997	-2.6954					54	26	3	0	0	0	0.73626	1	837	837		33.516	1.9858	1	118130	+		46932	29361	38915	38937	50391	50391					0.09395649073962886
QTKKKQRW	8	Unmodified	_QTKKKQRW_					0	0	0			REV__SIDT2|p.L327Q|1|0.15|ENSG00000149577|chr11:117186601-117186601|T/A|missense_variant	REV__SIDT2|p.L327Q|1|0.15|ENSG00000149577|chr11:117186601-117186601|T/A|missense_variant	MULTI-MATCH	OvCa99_classI_Rep5	1		2	551.827632	1101.64071	-0.26462	-0.00014602	9.1567	0.0050529	8.8921	0.0049069	551.8326438647737	30.408	0.24662	30.408	30.236	30.483	0	0.11406	0.0019495	NaN	33.516	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37704	+		46933	29361	38915	38937							0.09395649073962886
QTKKPDGV	8	Unmodified	_QTKKPDGV_					0	0	0			REV__ENSG00000100450|ENST00000216338|GZMH	REV__ENSG00000100450|ENST00000216338|GZMH	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.2622985839844	2	436.745442	871.476331	0.61091	0.00026681	-1.6062	-0.00070149	-0.99526	-0.00043468	436.744576554591	64.819	0.48365	61.334	61.163	61.647	-3.4854					13	9	2	0	0	0	0.028476	1	4669	4669		31.955	16.313	1	30625	+		46934	17419	38916	38938	50392	50392					0.035452118633770624
QTKKVVRPT	9	Unmodified	_QTKKVVRPT_					0	0	0		ENSG00000243749|ENST00000373337|TMEM35B	ENSG00000243749|ENST00000373337|TMEM35B	ENSG00000243749|ENST00000373337|TMEM35B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.31494140625	2	528.82984	1055.64513	-0.68637	-0.00036297	-0.73996	-0.00039131	-1.4263	-0.00075428	528.8289802478846	75.795	1.0579	72.856	72.401	73.459	-2.9389					58	21	4	0	0	0	0.027462	1	5947	5947		27.882	3.6795	1	86038			46935	9384	38917	38939	50393	50393					0.11953113496883816
QTKLENQLL	9	Unmodified	_QTKLENQLL_					0	0	0			REV__ENSG00000067900|ENST00000399799|ROCK1	REV__ENSG00000067900|ENST00000399799|ROCK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.7835693359375	2	543.811313	1085.60807	0.12108	6.5846E-05	0.088059	4.7887E-05	0.20914	0.00011373	543.8112418149481	62.522	0.84573	62.522	62.294	63.14	0					50	20	4	0	0	0	0.027462	1	5650	5650		14.865	1.4108	1	3469500	+		46936	16843	38918	38940	50394	50394					0.06869397160448898
QTKQLYKLV	9	Unmodified	_QTKQLYKLV_					0	0	0			REV__nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	REV__nc|ENSG00000160111|Q8IZJ3-2|CPAMD8	MULTI-SECPEP	OvCa9_classI_Rep2	2	560.8038330078125	2	560.839874	1119.66519	0.50786	0.00028483	-1.1368	-0.00063757	-0.62895	-0.00035274	560.839160954708	96.004	0.74681	94.976	94.714	95.461	-1.0281					28	14	3	0	0	0	0.027462	1	8700	8700		15.642	0	1	46239	+		46937	20638	38919	38941	50395	50395					0.11014864436833705
QTKRHTSLGI	10	Unmodified	_QTKRHTSLGI_					0	0	0			REV__ENST00000498611.5_1_22:50657979-50682900:-|nuORF	REV__ENST00000498611.5_1_22:50657979-50682900:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	570.8268432617188	2	570.827829	1139.64111	-5.555	-0.0031709	-4.3683	-0.0024936	-9.9233	-0.0056645	571.3252216159397	153.18	0.75999	152.21	151.9	152.66	-0.97301					28	15	3	0	0	0	0.74374	1	13131	13131		25.574	7.2496	1	27403	+		46938	26798	38920	38942	50396	50396					0.07687024003189435
QTKSREMIE	9	Unmodified	_QTKSREMIE_					0	0	0			REV__nc|ENSG00000112851|Q96RT1-6|ERBIN	REV__nc|ENSG00000112851|Q96RT1-6|ERBIN	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.3146362304688	2	561.284605	1120.55466	2.0364	0.001143	2.5481	0.0014302	4.5845	0.0025732	561.2858214498522	90.786	0.28023	90.786	90.577	90.857	0					19	6	4	0	0	0	0.027462	1	9745	9745		45.972	16.823	1	1286800	+		46939	28801	38921	38943	50397	50397					-0.0007972361370320868
QTKTSTRPI	9	Unmodified	_QTKTSTRPI_					0	0	0			REV__tr|A0A553SNB9|A0A553SNB9_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_24165PE=4SV=1	REV__tr|A0A553SNB9|A0A553SNB9_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_24165PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.2958984375	2	516.29583	1030.57711	-1.0165	-0.00052483	-0.30965	-0.00015987	-1.3262	-0.0006847	516.2958083039246	26.211	1.1989	26.211	25.992	27.191	0					78	23	6	0	0	0	0.094616	2	695	646;695		98.629	24.374	1	11731000	+		46940	30407	38922	38944	50398;50399	50399					0.06304243846216195
QTKTSTRPI	9	Unmodified	_QTKTSTRPI_					0	0	0			REV__tr|A0A553SNB9|A0A553SNB9_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_24165PE=4SV=1	REV__tr|A0A553SNB9|A0A553SNB9_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_24165PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	516.2960815429688	2	516.29583	1030.57711	0.9175	0.0004737	-1.1848	-0.0006117	-0.26729	-0.000138	516.295098499438	30.292	1.2323	27.582	27.36	28.592	-2.7097					62	24	4	0	0	0	0.094616	3	813	808;813;826		98.629	10.875	1	509350	+		46941	30407	38922	38944	50400;50401;50402	50401					0.06304243846216195
QTLASVHL	8	Unmodified	_QTLASVHL_					0	0	0			REV__ENSG00000100297|ENST00000216122|MCM5	REV__ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	OvCa99_classI_Rep5	1	434.7486267089844	2	434.747985	867.481417	2.0212	0.00087871	0.46541	0.00020234	2.4866	0.001081	434.74810462899137	105.84	0.87653	105.84	105.53	106.41	0					62	19	4	0	0	0	0.47599	1	11879	11879		79.939	0	1	7528800	+		46942	17393	38923	38945	50403	50403					0.0423751572599258
QTLGSPVSLIV	11	Unmodified	_QTLGSPVSLIV_					0	0	0		tr|A0A553SL72|A0A553SL72_NIACIChorismatesynthaseOS=NialliacirculansOX=1397GN=aroCPE=3SV=1	tr|A0A553SL72|A0A553SL72_NIACIChorismatesynthaseOS=NialliacirculansOX=1397GN=aroCPE=3SV=1	tr|A0A553SL72|A0A553SL72_NIACIChorismatesynthaseOS=NialliacirculansOX=1397GN=aroCPE=3SV=1	MSMS	OvCa9_classI_Rep2	2	557.3292846679688	2	557.329339	1112.64412	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.081	1	79.433	78.933	79.933	-1.6485								0	0	0	0.16257	1	6871	6871		52.937	3.4007	1				46943	33691	38924	38946	50404	50404					0.0923085433732922
QTLIDAPVE	9	Unmodified	_QTLIDAPVE_					0	0	0			REV__nc|ENSG00000036530|Q9Y6A2-3|CYP46A1	REV__nc|ENSG00000036530|Q9Y6A2-3|CYP46A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.7991943359375	2	493.263665	984.512776	0.43588	0.00021501	1.9716	0.00097251	2.4075	0.0011875	493.26430486133006	81.184	0.45839	81.184	80.871	81.329	0					16	10	2	0	0	0	0.027411	1	8338	8338		67.494	0	1	199070	+		46944	16607	38925	38947	50405	50405					0.01990043969431099
QTLKPLLLL	9	Unmodified	_QTLKPLLLL_					0	0	0			REV__ENST00000512188.1_1_4:174320275-174324278:-|nuORF	REV__ENST00000512188.1_1_4:174320275-174324278:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.79296875	2	519.84971	1037.68487	-0.69063	-0.00035902	-3.2131	-0.0016703	-3.9037	-0.0020294	519.8496291965414	87.148	1.6854	84.971	84.633	86.318	-2.1768					99	32	5	0	0	0	0.027462	1	5207	5207		37.159	0	1	724070	+		46945	24202	38926	38948	50406	50406					0.16753240447633289
QTLMGMSIVD	10	Unmodified	_QTLMGMSIVD_					0	0	0			REV__ENSG00000103485|ENST00000395384|QPRT	REV__ENSG00000103485|ENST00000395384|QPRT	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.3286743164062	2	547.76466	1093.51477	0.54141	0.00029657	3.7544	0.0020565	4.2958	0.0023531	547.7663939414916	110.4	1.1573	108.8	108.54	109.7	-1.6011					35	21	2	0	0	0	0.027028	1	10212	10212		31.53	11.048	1	92284	+		46946	17619	38927	38949	50407	50407					-0.02824986608607105
QTLMGMSIVD	10	Unmodified	_QTLMGMSIVD_					0	0	0			REV__ENSG00000103485|ENST00000395384|QPRT	REV__ENSG00000103485|ENST00000395384|QPRT	MULTI-MATCH	OvCa9_classI_Rep2	2		2	547.76466	1093.51477	0.25666	0.00014059	3.5762	0.0019589	3.8329	0.0020995	547.766448994312	108.77	1.137	108.55	108.27	109.41	-0.22498	-0.15004	-0.00040677	NaN	24.519	50	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35029	+		46947	17619	38927	38949							-0.02824986608607105
QTLMGMSIVD	10	Unmodified	_QTLMGMSIVD_					0	0	0			REV__ENSG00000103485|ENST00000395384|QPRT	REV__ENSG00000103485|ENST00000395384|QPRT	MULTI-MATCH	OvCa9_classI_Rep3	3		2	547.76466	1093.51477	-0.5489	-0.00030067	4.5802	0.0025089	4.0313	0.0022082	547.7670100268484	109.89	1.1024	108.74	108.35	109.45	-1.1444	0.047357	0.00069309	NaN	24.519	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103510	+		46948	17619	38927	38949							-0.02824986608607105
QTLNARDESI	10	Unmodified	_QTLNARDESI_					0	0	0		ERC1-CACNA1C|23|fusion;ERC1-CACNA1C|37|fusion;ERC1-CACNA1C|9|fusion;ERC1-CACNA1C|18|fusion;ERC1-CACNA1C|11|fusion;ERC1-CACNA1C|17|fusion;ERC1-CACNA1C|14|fusion;ERC1-CACNA1C|35|fusion;ERC1-CACNA1C|33|fusion;ERC1-CACNA1C|39|fusion;ERC1-CACNA1C|25|fusion;ERC1-CACNA1C|5|fusion;ERC1-CACNA1C|43|fusion;ERC1-CACNA1C|38|fusion;ERC1-CACNA1C|44|fusion;ERC1-CACNA1C|45|fusion;ERC1-CACNA1C|31|fusion;ERC1-CACNA1C|32|fusion;ERC1-CACNA1C|40|fusion;ERC1-CACNA1C|30|fusion;ERC1-CACNA1C|34|fusion;ERC1-CACNA1C|36|fusion;ERC1-CACNA1C|41|fusion;ERC1-CACNA1C|8|fusion;ERC1-CACNA1C|22|fusion;ERC1-CACNA1C|19|fusion;ERC1-CACNA1C|46|fusion;ERC1-CACNA1C|6|fusion;ERC1-CACNA1C|3|fusion;ERC1-CACNA1C|1|fusion;ERC1-CACNA1C|4|fusion;ERC1-CACNA1C|42|fusion;ERC1-CACNA1C|13|fusion;ERC1-CACNA1C|29|fusion;ERC1-CACNA1C|12|fusion;ERC1-CACNA1C|2|fusion;ERC1-CACNA1C|10|fusion;ERC1-CACNA1C|16|fusion;ERC1-CACNA1C|20|fusion;ERC1-CACNA1C|26|fusion;ERC1-CACNA1C|21|fusion;ERC1-CACNA1C|15|fusion;ERC1-CACNA1C|24|fusion;ERC1-CACNA1C|27|fusion;ERC1-CACNA1C|7|fusion;ERC1-CACNA1C|28|fusion;ENSG00000082805|ENST00000360905|ERC1;nc|ENSG00000082805|Q8IUD2-2|ERC1;nc|ENSG00000082805|Q8IUD2-3|ERC1;nc|ENSG00000082805|Q8IUD2-4|ERC1;SIPA1L3-ERC1|2|fusion;SIPA1L3-ERC1|1|fusion;ENSG00000187672|ENST00000288221|ERC2	ERC1-CACNA1C|23|fusion;ENSG00000187672|ENST00000288221|ERC2	ERC1-CACNA1C|23|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.3255615234375	2	573.791109	1145.56767	1.4439	0.00082849	-1.632	-0.00093643	-0.18811	-0.00010794	573.7900609743164	79.555	0.74793	79.555	79.079	79.827	0					32	18	2	0	0	0	0.026656	1	8126	8126		75.043	5.4157	1	358190			46949	14314;8422	38928	38950	50408	50408					0.0007043077002890641
QTLPCVCPP	9	2 Carbamidomethyl (C)	_QTLPC(Carbamidomethyl (C))VC(Carbamidomethyl (C))PP_	QTLPC(1)VC(1)PP		QTLPC(82)VC(82)PP		0	2	0			REV__ENST00000566780.5_1_16:79245693-79245831:+|nuORF	REV__ENST00000566780.5_1_16:79245693-79245831:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.2493286132812	2	536.25172	1070.48889	-1.5791	-0.00084681	-0.83614	-0.00044838	-2.4153	-0.0012952	536.2511641448887	120.77	1.4863	119.43	119.13	120.62	-1.3479					72	28	3	0	0	0	0.16524	1	11373	11373		82.305	8.05	1	361250	+		46950	27707	38929	38951	50409	50409	338;339				-0.04353836060249705
QTLTLLKP	8	Unmodified	_QTLTLLKP_					0	0	0		ENSG00000182179|ENST00000333486|UBA7;ENST00000483751.5_1_3:49846965-49847449:-|nuORF	ENSG00000182179|ENST00000333486|UBA7	ENSG00000182179|ENST00000333486|UBA7	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.7875061035156	2	457.289485	912.564418	-0.25959	-0.00011871	-0.83355	-0.00038117	-1.0931	-0.00049988	457.28777685855624	47.973	0.52446	47.973	47.724	48.248	0					16	11	2	0	0	0	0.028476	1	3523	3523		19.997	3.5236	1	66102			46951	7978	38930	38952	50410	50410					0.10463832453990562
QTLTRVSPL	9	Unmodified	_QTLTRVSPL_					0	0	0			REV__nc|ENSG00000101353|Q9H579|MROH8	REV__nc|ENSG00000101353|Q9H579|MROH8	MULTI-MSMS	OvCa99_classI_Rep5	1	508.30535888671875	2	507.800749	1013.58694	2.809	0.0014264	-0.78818	-0.00040024	2.0208	0.0010262	507.8003686214797	89.499	1.853	89.499	89.004	90.857	0					133	45	4	0	0	0	0.14445	2	9610	9610;9629		85.862	12.983	1	8833800	+		46952	17494	38931	38953	50411;50412	50411					0.08069431851606623
QTLTVAALL	9	Unmodified	_QTLTVAALL_					0	0	0			REV__ENSG00000167716|ENST00000409644|WDR81	REV__ENSG00000167716|ENST00000409644|WDR81	MULTI-MSMS	OvCa9_classI_Rep2	2	465.2854919433594	2	465.286943	928.559333	-1.6358	-0.00076114	-1.5296	-0.00071171	-3.1655	-0.0014728	465.28614320640764	142.28	1.4816	142.05	141.52	143	-0.22697					68	29	3	0	0	0	0.65476	1	14292	14292		25.45	2.4077	1	102120	+		46953	21303	38932	38954	50413	50413					0.09219528591370363
QTMSGKYVI	9	Unmodified	_QTMSGKYVI_					0	0	0			REV__nc|ENSG00000279078|Q9HBX3|SND1-IT1	REV__nc|ENSG00000279078|Q9HBX3|SND1-IT1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.3292236328125	2	513.76806	1025.52157	1.1943	0.00061359	-1.5572	-0.00080006	-0.36294	-0.00018647	513.767141438851	67.686	1.324	64.196	63.839	65.163	-3.4902					43	26	3	0	0	0	0.027447	1	5095	5095		66.429	35.926	1	175840	+		46954	29196	38933	38955	50414	50414					0.009826943342659433
QTMSGKYVI	9	Unmodified	_QTMSGKYVI_					0	0	0			REV__nc|ENSG00000279078|Q9HBX3|SND1-IT1	REV__nc|ENSG00000279078|Q9HBX3|SND1-IT1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	513.76806	1025.52157	-0.028389	-1.4585E-05	0.42232	0.00021697	0.39393	0.00020239	514.2698072755285	64.651	0.45518	64.651	64.461	64.916	0	0.26504	0.0012469	NaN	76.774	31	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	686660	+		46955	29196	38933	38955							0.009826943342659433
QTNEQPLLI	9	Unmodified	_QTNEQPLLI_					0	0	0			REV__SIKE1|p.S74P|1|0.17|ENSG00000052723|chr1:114780155-114780155|A/G|missense_variant	REV__SIKE1|p.S74P|1|0.17|ENSG00000052723|chr1:114780155-114780155|A/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	528.290771484375	2	528.290214	1054.56587	0.60514	0.00031969	-1.0506	-0.00055502	-0.44545	-0.00023533	528.2895188623011	120.01	1.0794	118.98	118.68	119.75	-1.0271					42	21	3	0	0	0	0.42676	1	9133	9133		49.442	2.9848	1	147030	+		46956	29362	38934	38956	50415	50415					0.040774217520947786
QTNKKSTKDIV	11	Unmodified	_QTNKKSTKDIV_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-MSMS	OvCa9_classI_Rep4_	4	631.3628540039062	2	631.359159	1260.70376	0.51323	0.00032403	3.5623	0.0022491	4.0756	0.0025732	631.3614756771998	109.66	1.2643	107.98	107.67	108.93	-1.6846					61	23	3	0	0	0	0.65063	1	10074	10074		40.058	1.3046	1	244860	+		46957	23052	38935	38957	50416	50416					0.08384125280713306
QTNKKSTKDIV	11	Unmodified	_QTNKKSTKDIV_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-MATCH	OvCa9_classI_Rep3	3		2	631.359159	1260.70376	0.27095	0.00017107	3.6838	0.0023258	3.9547	0.0024968	631.3614427804418	109.15	1.411	107.95	107.46	108.87	-1.1978	0.0076523	-0.00029121	NaN	40.058	61	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230390	+		46958	23052	38935	38957							0.08384125280713306
QTNQPKKHLT	10	Unmodified	_QTNQPKKHLT_					0	0	0		chr3:54634565-54637674|291|36.16|0.21|7.42|-|0|TE_info:HERVH-int,HERVH-int_dup1090,ERV1,LTR,donor,-,54637674,54639750|ESRG,None|2	chr3:54634565-54637674|291|36.16|0.21|7.42|-|0|TE_info:HERVH-int,HERVH-int_dup1090,ERV1,LTR,donor,-,54637674,54639750|ESRG,None|2	chr3:54634565-54637674|291|36.16|0.21|7.42|-|0|TE_info:HERVH-int,HERVH-int_dup1090,ERV1,LTR,donor,-,54637674,54639750|ESRG,None|2	MULTI-SECPEP	OvCa9_classI_Rep2	2	598.3159790039062	2	597.833111	1193.65167	-0.35728	-0.0002136	-3.4008	-0.0020331	-3.7581	-0.0022467	597.8311608583347	108.7	0.39552	108.47	108.12	108.52	-0.22498					10	7	2	0	0	0	0.02676	1	10187	10187		27.047	0	1	37136			46959	489	38936	38958	50417	50417					0.06259006657614918
QTPDHLGIW	9	Unmodified	_QTPDHLGIW_					0	0	0			REV__ENSG00000172016|ENST00000305165|REG3A	REV__ENSG00000172016|ENST00000305165|REG3A	MULTI-SECPEP	OvCa9_classI_Rep2	2	532.7813720703125	2	533.769448	1065.52434	-0.89436	-0.00047738	1.174	0.00062664	0.27964	0.00014926	533.7697365408161	78.844	1.1592	77.105	76.406	77.565	-1.7398					37	22	2	0	0	0	0.027462	1	6613	6613		24.519	0	1	26256	+		46960	19879	38937	38959	50418	50418					-0.005797142165647529
QTPDPSNKLF	10	Unmodified	_QTPDPSNKLF_					0	0	0			REV__nc|ENSG00000133863|Q9BXT5|TEX15	REV__nc|ENSG00000133863|Q9BXT5|TEX15	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.798828125	2	573.793121	1145.57169	1.8591	0.0010667	1.9569	0.0011229	3.816	0.0021896	573.7938010549349	115.47	0.97504	115.47	115.16	116.14	0					40	20	4	0	0	0	0.026734	1	13221	13221		18.262	0	1	698420	+		46961	19162	38938	38960	50419	50419					0.0047252026377009315
QTPEIPIDI	9	Unmodified	_QTPEIPIDI_					0	0	0		nc|ENSG00000073803|O43283-5|MAP3K13;nc|ENSG00000073803|O43283-4|MAP3K13;ENSG00000073803|ENST00000265026|MAP3K13	nc|ENSG00000073803|O43283-5|MAP3K13	nc|ENSG00000073803|O43283-5|MAP3K13	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.3270263671875	2	513.279315	1024.54408	-1.0247	-0.00052593	3.4698	0.001781	2.4452	0.0012551	513.2808644635157	67.827	1.1844	65.166	64.644	65.828	-2.661					39	23	3	0	0	0	0.027411	1	5295	5295		64.207	8.7031	1	42546			46962	1502	38939	38961	50420	50420					0.032786170035251416
QTPEKLTIR	9	Unmodified	_QTPEKLTIR_					0	0	0			REV__HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|73|2|sense	REV__HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|73|2|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	543.3473510742188	2	543.319306	1084.62406	-0.60443	-0.0003284	0.43799	0.00023797	-0.16644	-9.0432E-05	543.319434720792	64.55	0.68632	61.825	61.389	62.076	-2.7246					27	12	3	0	0	0	0.027418	1	4921	4921		52.937	0	1	132740	+		46963	28275	38940	38962	50421	50421					0.08513103397353916
QTPGQPLPPQ	10	Unmodified	_QTPGQPLPPQ_					0	0	0			REV__ENST00000389629.8_1_15:41773055-41773298:+|nuORF	REV__ENST00000389629.8_1_15:41773055-41773298:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	531.7819213867188	2	531.782556	1061.55056	-1.5399	-0.00081889	1.1515	0.00061235	-0.38839	-0.00020654	531.7830281716216	47.648	1.6888	44.939	44.39	46.079	-2.7097					102	33	5	0	0	0	0.42082	1	2925	2925		65.465	0	1	612800	+		46964	25231	38941	38963	50422	50422					0.022245549549097632
QTPSLNRDP	9	Unmodified	_QTPSLNRDP_					0	0	0		ENSG00000163637|ENST00000638394|PRICKLE2	ENSG00000163637|ENST00000638394|PRICKLE2	ENSG00000163637|ENST00000638394|PRICKLE2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.312255859375	2	514.261988	1026.50942	-0.64529	-0.00033185	0.65468	0.00033668	0.0093901	4.829E-06	514.2621691242928	52.589	0.45469	49.381	49.196	49.651	-3.208					9	8	2	0	0	0	0.027462	1	3179	3179		26.693	0	1	18140			46965	6339	38942	38964	50423	50423					-0.0027720608459276264
QTPVTFSSTAN	11	Unmodified	_QTPVTFSSTAN_					0	0	0		nc|ENSG00000188086|Q7RTY3-2|PRSS45P	nc|ENSG00000188086|Q7RTY3-2|PRSS45P	nc|ENSG00000188086|Q7RTY3-2|PRSS45P	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.8042602539062	2	576.78021	1151.54587	-1.2586	-0.00072592	3.1289	0.0018047	1.8703	0.0010787	576.7821402133643	80.945	1.5564	78.234	77.714	79.271	-2.7106					83	31	4	0	0	0	0.025418	1	6669	6669		40.058	11.804	1	308770			46966	15228	38943	38965	50424	50424					-0.023843739784979334
QTPVTFSSTAN	11	Unmodified	_QTPVTFSSTAN_					0	0	0		nc|ENSG00000188086|Q7RTY3-2|PRSS45P	nc|ENSG00000188086|Q7RTY3-2|PRSS45P	nc|ENSG00000188086|Q7RTY3-2|PRSS45P	MULTI-MATCH	OvCa9_classI_Rep2	2		2	576.78021	1151.54587	-0.33675	-0.00019423	2.1083	0.001216	1.7716	0.0010218	576.781395871115	79.918	1.6087	78.223	77.61	79.218	-1.6951	0.025066	-0.00023784	NaN	47.96	68	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197140			46967	15228	38943	38965							-0.023843739784979334
QTQAMQILV	9	Unmodified	_QTQAMQILV_					0	0	0		ENST00000473602.1_1_4:77631195-77631430:+|nuORF;ENST00000486758.5_1_4:77610752-77631430:+|nuORF	ENST00000473602.1_1_4:77631195-77631430:+|nuORF	ENST00000473602.1_1_4:77631195-77631430:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2946166992188	2	516.281334	1030.54812	-1.0122	-0.00052256	-0.60164	-0.00031062	-1.6138	-0.00083317	516.2812965640127	26.216	0.49948	26.216	25.992	26.492	0					12	9	3	0	0	0	0.027185	1	646	646		93.195	5.4412	1	97604			46968	12412	38944	38966	50425	50425					0.03406383225569698
QTQPKHLL	8	Unmodified	_QTQPKHLL_					0	0	0		ENST00000370071.6_1_1:108023260-108023536:+|nuORF	ENST00000370071.6_1_1:108023260-108023536:+|nuORF	ENST00000370071.6_1_1:108023260-108023536:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	482.7833557128906	2	482.782359	963.550165	-0.22965	-0.00011087	-0.2465	-0.000119	-0.47615	-0.00022988	482.78215102086523	80.677	1.8812	78.355	77.827	79.708	-2.3226					87	36	4	0	0	0	0.68714	1	4455	4455		45.952	3.4775	1	559620			46969	10917	38945	38967	50426	50426					0.06693180025706624
QTQVQPQII	9	Unmodified	_QTQVQPQII_					0	0	0			REV__nc|ENSG00000056487|Q96EK2-4|PHF21B	REV__nc|ENSG00000056487|Q96EK2-4|PHF21B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.833251953125	2	527.798206	1053.58186	-0.82919	-0.00043764	3.4346	0.0018128	2.6054	0.0013751	527.8000303960224	105.52	0.89777	103.5	103.05	103.95	-2.0161					24	17	2	0	0	0	0.027353	1	9604	9604		52.937	0	1	31748	+		46970	16716	38946	38968	50427	50427					0.05721127988999797
QTRDKMWN	8	Unmodified	_QTRDKMWN_					0	0	0			REV__tr|A0A7D6VUH2|A0A7D6VUH2_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11755PE=4SV=1	REV__tr|A0A7D6VUH2|A0A7D6VUH2_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11755PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.78173828125	2	539.758558	1077.50256	-0.071383	-3.853E-05	-3.8342	-0.0020695	-3.9056	-0.0021081	539.7564197051471	105.07	0.52612	105.07	104.79	105.31	0					17	11	2	0	0	0	0.028476	1	11790	11790		23.042	3.939	1	303390	+		46971	31677	38947	38969	50428	50428					-0.03308842236788223
QTRLEVPVL	9	Unmodified	_QTRLEVPVL_					0	0	0			REV__CCNF|p.P753Kfs*22|1|0.2|ENSG00000162063|chr16:2456913-2456914|CC/-|frameshift_variant	REV__CCNF|p.P753Kfs*22|1|0.2|ENSG00000162063|chr16:2456913-2456914|CC/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.314453125	2	527.816399	1053.61824	-1.0496	-0.00055401	1.0277	0.00054242	-0.021957	-1.1589E-05	527.8169367751104	74.399	1.2512	71.168	70.906	72.157	-3.2308					39	25	2	0	0	0	0.027462	1	5913	5913		44.117	16.235	1	330020	+		46972	15755	38948	38970	50429	50429					0.09358004885712035
QTRLILVE	8	Unmodified	_QTRLILVE_					0	0	0			REV__ENSG00000167306|ENST00000285039|MYO5B	REV__ENSG00000167306|ENST00000285039|MYO5B	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.2387390136719	2	486.297842	970.581131	-0.20374	-9.9076E-05	1.1382	0.00055353	0.93451	0.00045445	486.2994391726179	51.187	0.71961	51.187	50.949	51.669	0					27	16	3	0	0	0	0.028476	1	3966	3966		44.117	0	1	1049800	+		46973	21269	38949	38971	50430	50430					0.09466333339958055
QTRLIVCFI	9	Unmodified	_QTRLIVCFI_					0	0	0			REV__ENSG00000155850|ENST00000286298|SLC26A2	REV__ENSG00000155850|ENST00000286298|SLC26A2	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.7974243164062	2	546.815344	1091.61614	3.7682	0.0020605	-1.0784	-0.00058967	2.6898	0.0014708	547.3169069978509	88.264	0.17067	88.264	88.171	88.342	0					5	3	2	0	0	0	0.027462	1	9373	9373		32.812	3.6629	1	66219	+		46974	20444	38950	38972	50431	50431					0.07399252876257378
QTRLYLRSHR	10	Unmodified	_QTRLYLRSHR_					0	0	0		ENSG00000163060|ENST00000295201|TEKT4	ENSG00000163060|ENST00000295201|TEKT4	ENSG00000163060|ENST00000295201|TEKT4	MULTI-MSMS	OvCa99_classI_Rep5	1	443.9210510253906	3	443.92146	1328.74255	-0.036475	-1.6192E-05	-0.99904	-0.0004435	-1.0355	-0.00045969	443.9209172499878	36.908	0.67163	36.908	36.487	37.159	0					37	14	4	0	0	0	0.6898	1	1978	1978		31.634	2.3893	1	1262000			46975	6260	38951	38973	50432	50432					0.09132895425727838
QTRMCPTF	8	Unmodified	_QTRMCPTF_					0	0	0		ENST00000467930.1_1_11:46450561-46450624:-|nuORF	ENST00000467930.1_1_11:46450561-46450624:-|nuORF	ENST00000467930.1_1_11:46450561-46450624:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.8046875	2	492.225505	982.436457	-0.45577	-0.00022434	-1.1694	-0.00057561	-1.6252	-0.00079995	492.22462007962156	51.149	0.85361	47.976	47.771	48.624	-3.1734					24	16	3	0	0	0	0.028476	1	2984	2984		16.473	9.7376	1	27375			46976	12318	38952	38974	50433	50433					-0.05546374403206755
QTRMCPTF	8	Unmodified	_QTRMCPTF_					0	0	0		ENST00000467930.1_1_11:46450561-46450624:-|nuORF	ENST00000467930.1_1_11:46450561-46450624:-|nuORF	ENST00000467930.1_1_11:46450561-46450624:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	492.225505	982.436457	-0.65985	-0.0003248	-1.5175	-0.00074698	-2.1774	-0.0010718	492.22433542149906	51.117	0.24937	48.323	48.222	48.472	-2.794	0.17385	-0.00023262	NaN	35.618	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6491.6			46977	12318	38952	38974							-0.05546374403206755
QTRQASTL	8	Unmodified	_QTRQASTL_					0	0	0		nc|ENSG00000079819|O43491-2|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2	nc|ENSG00000079819|O43491-2|EPB41L2	nc|ENSG00000079819|O43491-2|EPB41L2	MULTI-SECPEP	OvCa99_classI_Rep5	1	451.7506408691406	2	452.745973	903.477394	0.044613	2.0198E-05	3.2166	0.0014563	3.2613	0.0014765	452.74711855604284	35.73	0.46291	35.73	35.566	36.029	0					12	9	2	0	0	0	0.028476	1	1861	1861		34.173	2.6427	1	87669			46978	1622	38953	38975	50434	50434					0.021794262322941904
QTRRRPPK	8	Unmodified	_QTRRRPPK_					0	0	0		RCOR2|p.R254Q|1|0.21|ENSG00000167771|chr11:63914084-63914084|C/T|missense_variant	RCOR2|p.R254Q|1|0.21|ENSG00000167771|chr11:63914084-63914084|C/T|missense_variant	RCOR2|p.R254Q|1|0.21|ENSG00000167771|chr11:63914084-63914084|C/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.3033447265625	2	519.817599	1037.62064	-0.35011	-0.00018199	1.706	0.0008868	1.3559	0.00070481	519.818469283872	66.81	0.73875	63.32	63	63.739	-3.4902					22	14	2	0	0	0	0.028476	1	4849	4849		3.6843	0	1	89162			46979	15545	38954	38976	50435	50435					0.10333898134012998
QTSATFLRV	9	Unmodified	_QTSATFLRV_					0	0	0		nc|ENSG00000100764|P62191-2|PSMC1;ENSG00000100764|ENST00000261303|PSMC1;ENST00000434820.1_1_2:17566863-17567166:+|nuORF;ENST00000555787.1_1_14:90734518-90735894:+|nuORF	nc|ENSG00000100764|P62191-2|PSMC1	nc|ENSG00000100764|P62191-2|PSMC1	MULTI-MSMS	OvCa99_classI_Rep5	1	511.78564453125	2	511.785099	1021.55564	2.4512	0.0012545	-0.5925	-0.00030323	1.8587	0.00095125	511.78464998092323	84.406	0.83007	84.406	84.093	84.923	0					35	19	3	0	0	0	0.2077	2	8804	8804;8810		75.043	21.97	1	2525000			46980	2103	38955	38977	50436;50437	50436					0.04572858817505221
QTSDKATII	9	Unmodified	_QTSDKATII_					0	0	0			REV__ROS1|p.T1963Dfs*18|1|0.07|ENSG00000047936|chr6:117319921-117319922|-/GGCATGTTTGAAGAAAAATGATTGCCTGATAGGTC|frameshift_variant	REV__ROS1|p.T1963Dfs*18|1|0.07|ENSG00000047936|chr6:117319921-117319922|-/GGCATGTTTGAAGAAAAATGATTGCCTGATAGGTC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	488.7676086425781	2	488.769114	975.523675	0.030062	1.4693E-05	-3.7122	-0.0018144	-3.6821	-0.0017997	488.7671472527535	114.4	1.1477	114.4	114.15	115.3	0					55	24	4	0	0	0	0.03923	1	13066	13066		127.46	14.05	1	1213400	+		46981	16664	38956	38978	50438	50438					0.034934463437252816
QTSGKERLL	9	Unmodified	_QTSGKERLL_					0	0	0		nc|ENSG00000133063|Q13231-2|CHIT1;nc|ENSG00000133063|Q13231-3|CHIT1;nc|ENSG00000133063|Q13231-4|CHIT1;ENSG00000133063|ENST00000367229|CHIT1	nc|ENSG00000133063|Q13231-2|CHIT1	nc|ENSG00000133063|Q13231-2|CHIT1	MULTI-MSMS	OvCa9_classI_Rep2	2	516.2962646484375	2	516.29583	1030.57711	0.9175	0.0004737	-1.1848	-0.0006117	-0.26729	-0.000138	516.295098499438	30.292	1.2323	27.582	27.36	28.592	-2.7097					62	24	4	0	0	0	0.46377	1	851	851		45.952	1.8352	1	509350			46982	4195	38957	38979	50439	50439					0.06304243846238933
QTSHFQGRL	9	Unmodified	_QTSHFQGRL_					0	0	0		ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	ENSG00000188352|ENST00000338382|FOCAD	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3193359375	2	537.277972	1072.54139	-0.056951	-3.0599E-05	-1.0177	-0.00054676	-1.0746	-0.00057736	537.2773323107652	30.653	0.3977	30.653	30.483	30.881	0					14	7	3	0	0	0	0.027462	1	1206	1206		10.866	0	1	47052			46983	8469	38958	38980	50440	50440					0.008022063892440201
QTSHQKTLL	9	Unmodified	_QTSHQKTLL_					0	0	0		tr|A0A553SPB1|A0A553SPB1_NIACItRNA(Met)cytidineacetateligaseOS=NialliacirculansOX=1397GN=tmcALPE=3SV=1	tr|A0A553SPB1|A0A553SPB1_NIACItRNA(Met)cytidineacetateligaseOS=NialliacirculansOX=1397GN=tmcALPE=3SV=1	tr|A0A553SPB1|A0A553SPB1_NIACItRNA(Met)cytidineacetateligaseOS=NialliacirculansOX=1397GN=tmcALPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.3147583007812	2	528.29583	1054.57711	-0.64413	-0.00034029	2.9721	0.0015701	2.3279	0.0012298	528.2976960155385	75.364	0.24232	72.133	71.915	72.157	-3.2308					5	4	2	0	0	0	0.027462	1	5923	5923		42.396	1.8235	1	25939			46984	34024	38959	38981	50441	50441					0.052002438462295686
QTSMLKSTK	9	Unmodified	_QTSMLKSTK_					0	0	0		ENSG00000010818|ENST00000367603|HIVEP2	ENSG00000010818|ENST00000367603|HIVEP2	ENSG00000010818|ENST00000367603|HIVEP2	MULTI-MSMS	OvCa99_classI_Rep5	1	512.2808227539062	2	512.278792	1022.54303	2.9509	0.0015117	-0.99943	-0.00051199	1.9515	0.00099969	512.2780326734095	89.622	0.95148	89.622	89.235	90.186	0					52	22	4	0	0	0	0.35694	1	9581	9581		56.434	0	1	5203600			46985	950	38960	38982	50442	50442					0.032660793629816
QTSRKIPVL	9	Unmodified	_QTSRKIPVL_					0	0	0		ENSG00000157796|ENST00000399820|WDR19;nc|ENSG00000157796|Q8NEZ3-2|WDR19;ENST00000502389.1_1_4:39184171-39196284:+|nuORF	ENSG00000157796|ENST00000399820|WDR19	ENSG00000157796|ENST00000399820|WDR19	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.7779541015625	2	521.324391	1040.63423	-1.2183	-0.00063515	1.6946	0.00088342	0.47623	0.00024827	521.3250153070674	39.977	0.53721	39.977	39.756	40.294	0					17	11	2	0	0	0	0.027462	1	2390	2390		21.96	1.013	1	128380			46986	5911	38961	38983	50443	50443					0.11553711122587629
QTSTHELQL	9	Unmodified	_QTSTHELQL_					0	0	0			REV__nc|ENSG00000137497|Q14980-4|NUMA1	REV__nc|ENSG00000137497|Q14980-4|NUMA1	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.842041015625	2	528.769645	1055.52474	-0.33001	-0.0001745	0.97847	0.00051739	0.64846	0.00034289	528.7691270577725	72.476	0.94234	70.05	69.566	70.509	-2.4256					22	17	2	0	0	0	0.027425	1	5826	5826		69.628	30.375	1	20360	+		46987	19457	38962	38984	50444	50444					-0.0008033928738768736
QTSTHELQL	9	Unmodified	_QTSTHELQL_					0	0	0			REV__nc|ENSG00000137497|Q14980-4|NUMA1	REV__nc|ENSG00000137497|Q14980-4|NUMA1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	528.769645	1055.52474	-1.8401	-0.00097301	4.1118	0.0021742	2.2717	0.0012012	528.7700252542568	73.28	1.1127	69.884	69.301	70.414	-3.3961	-0.083395	0.0016877	NaN	69.628	50	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103560	+		46988	19457	38962	38984							-0.0008033928738768736
QTTELKSNKKI	11	Unmodified	_QTTELKSNKKI_					0	0	0			REV__tr|A0A7D7A2Z8|A0A7D7A2Z8_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19760PE=4SV=1	REV__tr|A0A7D7A2Z8|A0A7D7A2Z8_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19760PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	645.377197265625	2	645.374809	1288.73507	-0.097692	-6.3048E-05	0.028687	1.8514E-05	-0.069005	-4.4534E-05	645.3747709262667	55.828	1.3173	52.533	52.26	53.577	-3.2944					74	25	4	0	0	0	0.31995	1	3538	3538		66.962	5.1974	1	726230	+		46989	32560	38963	38985	50445	50445					0.10224698314777925
QTTELKSNKKI	11	Unmodified	_QTTELKSNKKI_					0	0	0			REV__tr|A0A7D7A2Z8|A0A7D7A2Z8_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19760PE=4SV=1	REV__tr|A0A7D7A2Z8|A0A7D7A2Z8_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19760PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	645.374809	1288.73507	-1.9482	-0.0012573	2.1012	0.001356	0.15301	9.8748E-05	645.3761023984235	55.339	1.2416	52.525	52.172	53.414	-2.8139	-0.0040499	0.00081505	NaN	66.962	59	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174740	+		46990	32560	38963	38985							0.10224698314777925
QTTLASVKE	9	Unmodified	_QTTLASVKE_					0	0	0			REV__ENSG00000166833|ENST00000349880|NAV2	REV__ENSG00000166833|ENST00000349880|NAV2	MULTI-MSMS	OvCa99_classI_Rep5	1	488.7684020996094	2	488.769114	975.523675	0.030062	1.4693E-05	-3.7122	-0.0018144	-3.6821	-0.0017997	488.7671472527535	114.4	1.1477	114.4	114.15	115.3	0					55	24	4	0	0	0	0.21284	1	13044	13044		74.165	2.2875	1	1213400	+		46991	21225	38964	38986	50446	50446					0.034934463437252816
QTTLSPLNDL	10	Unmodified	_QTTLSPLNDL_					0	0	0		L1MB2_dup734|chr2:41391481-41393110:-|2.5038669870492565|0.0056028466714037|8.8|420.0|118|3|anti-sense	L1MB2_dup734|chr2:41391481-41393110:-|2.5038669870492565|0.0056028466714037|8.8|420.0|118|3|anti-sense	L1MB2_dup734|chr2:41391481-41393110:-|2.5038669870492565|0.0056028466714037|8.8|420.0|118|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	551.2887573242188	2	551.292953	1100.57135	0.49776	0.00027441	-3.7166	-0.002049	-3.2189	-0.0017745	551.2906448953081	140.61	0.9735	140.61	140.31	141.29	0					65	19	5	0	0	0	0.53396	1	16411	16411		50.034	0.59196	1	472680			46992	14588	38965	38987	50447	50447					0.0250910054387532
QTTSKLGRK	9	Unmodified	_QTTSKLGRK_					0	0	0			REV__LTR85b_dup84|chr1:206068387-206068726:+|3.260796380358353|0.1463995263453968|4.48|423.0|5|2|sense	REV__LTR85b_dup84|chr1:206068387-206068726:+|3.260796380358353|0.1463995263453968|4.48|423.0|5|2|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.8039855957031	2	509.803823	1017.59309	2.0238	0.0010317	-2.1568	-0.0010995	-0.13299	-6.7799E-05	509.80258654056354	136.53	4.9049	134.99	133.61	138.51	-1.5437					290	101	5	0	0	0	0.70177	1	13457	13457		17.365	2.5001	1	173450	+		46993	28634	38966	38988	50448	50448					0.08499950083137264
QTVCVLGLLF	10	Unmodified	_QTVCVLGLLF_					0	0	0			REV__ENSG00000268104|ENST00000598581|SLC6A14	REV__ENSG00000268104|ENST00000598581|SLC6A14	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.7463989257812	2	546.809728	1091.6049	-1.6173	-0.00088436	0.16803	9.1882E-05	-1.4493	-0.00079248	546.8099658719898	106.9	0.8415	105.02	104.75	105.59	-1.8785					17	14	2	0	0	0	0.026688	1	9753	9753		58.782	18.004	1	18529	+		46994	23595	38967	38989	50449	50449					0.06276430782099851
QTVDPRKKLH	10	Unmodified	_QTVDPRKKLH_					0	0	0			REV__ENSG00000122641|ENST00000242208|INHBA	REV__ENSG00000122641|ENST00000242208|INHBA	MULTI-MSMS	OvCa9_classI_Rep2	2	611.3557739257812	2	611.356754	1220.69895	-3.7398	-0.0022864	2.6738	0.0016346	-1.0661	-0.00065175	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.69073	1	15179	15179		31.53	1.0262	1	331570	+		46995	18606	38968	38990	50450	50450					0.09743285928584555
QTVFNSSSTKL	11	Unmodified	_QTVFNSSSTKL_					0	0	0		ENST00000537833.5_1_12:7250950-7252531:-|nuORF	ENST00000537833.5_1_12:7250950-7252531:-|nuORF	ENST00000537833.5_1_12:7250950-7252531:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	606.3584594726562	2	606.31696	1210.61937	-1.2573	-0.00076231	-3.1604	-0.0019162	-4.4177	-0.0026785	606.3138036432975	103.33	1.7293	102.64	102.03	103.76	-0.68459					63	34	3	0	0	0	0.025749	1	9577	9577		70.816	22.857	1	25798			46996	13412	38969	38991	50451	50451					0.02248174463943542
QTVFNSSSTKL	11	Unmodified	_QTVFNSSSTKL_					0	0	0		ENST00000537833.5_1_12:7250950-7252531:-|nuORF	ENST00000537833.5_1_12:7250950-7252531:-|nuORF	ENST00000537833.5_1_12:7250950-7252531:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	606.31696	1210.61937	2.685	0.001628	-4.4702	-0.0027104	-1.7852	-0.0010824	606.3147162749841	102.83	1.1779	102.83	102.29	103.47	0	0.091815	-0.0010075	NaN	70.816	32	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	254170			46997	13412	38969	38991							0.02248174463943542
QTVHVRICP	9	Unmodified	_QTVHVRICP_					0	0	0		ENSG00000124215|ENST00000348616|CDH26;nc|ENSG00000124215|Q8IXH8-1|CDH26	ENSG00000124215|ENST00000348616|CDH26	ENSG00000124215|ENST00000348616|CDH26	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.8543701171875	2	526.787118	1051.55968	-2.5467	-0.0013416	-3.8661	-0.0020366	-6.4128	-0.0033782	527.2867201504141	147.91	1.0515	146.48	146.22	147.28	-1.4351					23	20	2	0	0	0	0.027462	1	14554	14554		53.351	5.4358	1	12311			46998	3635	38970	38992	50452	50452					0.03596625039585888
QTVHVRICP	9	Unmodified	_QTVHVRICP_					0	0	0		ENSG00000124215|ENST00000348616|CDH26;nc|ENSG00000124215|Q8IXH8-1|CDH26	ENSG00000124215|ENST00000348616|CDH26	ENSG00000124215|ENST00000348616|CDH26	MULTI-MATCH	OvCa9_classI_Rep2	2		2	526.787118	1051.55968	-2.7128	-0.0014291	-3.5425	-0.0018661	-6.2553	-0.0032952	526.7853485340218	146.87	0.30182	146.65	146.57	146.87	-0.22696	0.084726	0.0001719	NaN	53.351	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7803.5			46999	3635	38970	38992							0.03596625039585888
QTVKLALDT	9	Unmodified	_QTVKLALDT_					0	0	0			REV__tr|A0A553SMY7|A0A553SMY7_NIACIAconitatehydrataseOS=NialliacirculansOX=1397GN=acnAPE=3SV=1	REV__tr|A0A553SMY7|A0A553SMY7_NIACIAconitatehydrataseOS=NialliacirculansOX=1397GN=acnAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	495.3226318359375	2	494.787307	987.560061	-0.32638	-0.00016149	-3.9363	-0.0019476	-4.2627	-0.0021091	494.787227437322	104.53	0.79135	103.96	103.62	104.41	-0.57639					27	15	3	0	0	0	0.027418	1	9703	9703		68.787	14.011	1	27994	+		47000	30382	38971	38993	50453	50453					0.06578323240398731
QTVKLWEV	8	Unmodified	_QTVKLWEV_					0	0	0		ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	MULTI-MSMS	OvCa99_classI_Rep5	1	501.78607177734375	2	501.784567	1001.55458	3.3901	0.0017011	-1.0694	-0.00053658	2.3208	0.0011645	501.78383795374975	97.702	0.85748	97.702	97.18	98.037	0					42	19	4	0	0	0	0.53252	1	10738	10738		74.255	2.9593	1	2634100			47001	1319	38972	38994	50454	50454					0.05386644448606148
QTVLENFTT	9	Unmodified	_QTVLENFTT_					0	0	0			REV__ENST00000418559.5_1_2:183617332-183641856:+|nuORF	REV__ENST00000418559.5_1_2:183617332-183641856:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.341064453125	2	526.766571	1051.51859	-1.4071	-0.00074124	1.4742	0.00077657	0.067082	3.5337E-05	526.7657015844441	87.431	0.45449	84.804	84.549	85.004	-2.6269					10	8	2	0	0	0	0.027403	1	7430	7430		63.534	10.597	1	14172	+		47002	17005	38973	38995	50455	50455					-0.005108575189296971
QTVLSGALKP	10	Unmodified	_QTVLSGALKP_					0	0	0			REV__ENSG00000101407|ENST00000373447|TTI1	REV__ENSG00000101407|ENST00000373447|TTI1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.27008056640625	2	507.303124	1012.5917	0.11406	5.7865E-05	0.54199	0.00027495	0.65605	0.00033282	507.3032436337115	72.861	0.50938	72.861	72.645	73.155	0					28	12	3	0	0	0	0.027001	1	7094	7094		28.081	0	1	2087900	+		47003	17500	38974	38996	50456	50456					0.08590315994365483
QTVPPCPLQ	9	Unmodified	_QTVPPCPLQ_					0	0	0			REV__nc|ENSG00000005339|Q92793-2|CREBBP	REV__nc|ENSG00000005339|Q92793-2|CREBBP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.8055725097656	2	491.754953	981.495352	-0.73745	-0.00036265	0.93892	0.00046172	0.20147	9.9073E-05	491.7551026639016	50.905	0.25328	47.732	47.568	47.821	-3.1734					6	4	2	0	0	0	0.027462	1	2960	2960		30.318	0	1	22352	+		47004	16398	38975	38997	50457	50457					0.0038642516276468086
QTVVVEQVV	9	Unmodified	_QTVVVEQVV_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.3022155761719	2	500.787307	999.560061	-0.91908	-0.00046027	1.3651	0.00068363	0.44603	0.00022337	500.7875852934965	98.575	1.6899	97.682	97.41	99.1	-0.89305					55	33	2	0	0	0	0.027459	1	9049	9049		52.937	12.159	1	199230	+		47005	21314	38976	38998	50458	50458					0.06026323240428155
QTVVVEQVV	9	Unmodified	_QTVVVEQVV_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	MULTI-MATCH	OvCa9_classI_Rep3	3		2	500.787307	999.560061	-0.64584	-0.00032343	1.4063	0.00070426	0.76046	0.00038083	500.78745659961993	99.397	0.81931	97.712	97.524	98.344	-1.685	0.042605	-0.00020131	NaN	52.937	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169890	+		47006	21314	38976	38998							0.06026323240428155
QTVYRLII	8	Unmodified	_QTVYRLII_					0	0	0		tr|A0A553STP4|A0A553STP4_NIACIProbablemembranetransporterproteinOS=NialliacirculansOX=1397GN=CEQ21_05385PE=3SV=1	tr|A0A553STP4|A0A553STP4_NIACIProbablemembranetransporterproteinOS=NialliacirculansOX=1397GN=CEQ21_05385PE=3SV=1	tr|A0A553STP4|A0A553STP4_NIACIProbablemembranetransporterproteinOS=NialliacirculansOX=1397GN=CEQ21_05385PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.7838134765625	2	503.30821	1004.60187	0.4413	0.00022211	1.8834	0.00094794	2.3247	0.00117	503.81115035775247	101.56	0.54774	101.56	101.27	101.82	0					30	12	4	0	0	0	0.028476	1	11312	11312		50.025	4.0726	1	229790			47007	34515	38977	38999	50459	50459					0.09974923719619255
QTYKYEGQI	9	Unmodified	_QTYKYEGQI_					0	0	0			REV__ENSG00000135829|ENST00000367549|DHX9	REV__ENSG00000135829|ENST00000367549|DHX9	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.2909545898438	2	565.279846	1128.54514	0.75232	0.00042527	-3.9746	-0.0022468	-3.2223	-0.0018215	565.2773811265919	161.97	0.6123	161.97	161.66	162.28	0					16	11	2	0	0	0	0.027462	1	18997	18997		32.812	6.1195	1	23583	+		47008	19325	38978	39000	50460	50460					-0.013991686275630855
QTYLHQGLE	9	Unmodified	_QTYLHQGLE_					0	0	0		nc|ENSG00000185008|Q9HCK4-2|ROBO2;nc|ENSG00000185008|Q9HCK4|ROBO2;nc|ENSG00000185008|Q9HCK4-3|ROBO2;ENSG00000185008|ENST00000696593|ROBO2	nc|ENSG00000185008|Q9HCK4-2|ROBO2	nc|ENSG00000185008|Q9HCK4-2|ROBO2	MULTI-MSMS	OvCa99_classI_Rep5	1	544.7747802734375	2	544.772188	1087.52982	2.3085	0.0012576	0.99907	0.00054427	3.3076	0.0018019	544.7739374019363	84.294	1.0829	84.294	83.921	85.004	0					67	25	4	0	0	0	0.28934	1	8782	8782		64.207	4.089	1	3453300			47009	8210	38979	39001	50461	50461					-0.010440354247748473
QTYVGITEK	9	Unmodified	_QTYVGITEK_					0	0	0		SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant;ENSG00000144028|ENST00000323853|SNRNP200;SNRNP200|p.D1323Lfs*87|1|0.04|ENSG00000144028|chr2:96286347-96286348|-/AG|frameshift_variant	SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.7777099609375	2	519.776939	1037.53933	-0.50328	-0.00026159	0.04528	2.3536E-05	-0.458	-0.00023806	519.7768395446219	62.297	1.9726	58.839	58.057	60.029	-3.4577					89	40	3	0	0	0	0.17606	1	4327	4327		80.455	6.1996	1	1427500			47010	5119	38980	39002	50462	50462					0.022057328607616
QTYVGITEK	9	Unmodified	_QTYVGITEK_					0	0	0		SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant;ENSG00000144028|ENST00000323853|SNRNP200;SNRNP200|p.D1323Lfs*87|1|0.04|ENSG00000144028|chr2:96286347-96286348|-/AG|frameshift_variant	SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	519.776939	1037.53933	-1.1638	-0.00060492	0.72733	0.00037805	-0.43648	-0.00022687	519.7772168727273	61.716	1.4212	58.957	58.568	59.989	-2.7593	0.058922	0.00048796	NaN	80.455	54	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257320			47011	5119	38980	39002							0.022057328607616
QVADRRVI	8	Unmodified	_QVADRRVI_					0	0	0		ENSG00000013375|ENST00000513973|PGM3;nc|ENSG00000013375|O95394-3|PGM3;nc|ENSG00000013375|O95394-4|PGM3	ENSG00000013375|ENST00000513973|PGM3	ENSG00000013375|ENST00000513973|PGM3	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.7651062011719	2	478.785433	955.556313	0.12442	5.9569E-05	-0.35339	-0.0001692	-0.22897	-0.00010963	478.78516723608226	56.991	0.43143	56.991	56.833	57.264	0					13	9	2	0	0	0	0.028476	1	4795	4795		47.916	22.465	1	319930			47012	985	38981	39003	50463	50463					0.07675698257230579
QVAHLQLVL	9	Unmodified	_QVAHLQLVL_					0	0	0			REV__ENST00000510501.1_1_8:59337214-59337583:-|nuORF	REV__ENST00000510501.1_1_8:59337214-59337583:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	510.8135070800781	2	510.813659	1019.61277	0.66577	0.00034009	-0.99665	-0.0005091	-0.33088	-0.00016902	510.81303107097773	129.05	1.0381	127.95	127.51	128.55	-1.1018					49	20	3	0	0	0	0.55588	1	10188	10188		37.159	1.9584	1	128600	+		47013	26943	38982	39004	50464	50464					0.10374326093892705
QVAKSDFLV	9	Unmodified	_QVAKSDFLV_					0	0	0			REV__ENST00000504704.6_1_4:159690364-159754995:+|nuORF	REV__ENST00000504704.6_1_4:159690364-159754995:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.7519836425781	2	503.782025	1005.5495	-0.46195	-0.00023272	-0.3051	-0.00015371	-0.76705	-0.00038643	503.78131862940893	49.205	0.25602	49.205	49.031	49.287	0					8	5	2	0	0	0	0.027462	1	3637	3637		21.96	0	1	79746	+		47014	16691	38983	39005	50465	50465					0.046943405859906306
QVAKTKQQI	9	Unmodified	_QVAKTKQQI_					0	0	0		nc|ENSG00000137312|O75955-2|FLOT1;ENSG00000137312|ENST00000376389|FLOT1;ENST00000487376.5_1_6:30698694-30708587:-|nuORF	nc|ENSG00000137312|O75955-2|FLOT1	nc|ENSG00000137312|O75955-2|FLOT1	MULTI-MSMS	OvCa99_classI_Rep5	1	522.3143920898438	2	522.314023	1042.61349	-0.78468	-0.00040985	-0.28081	-0.00014667	-1.0655	-0.00055652	522.313917291577	29.71	1.5896	29.71	29.486	31.076	0					68	31	5	0	0	0	0.1804	1	1072	1072		79.713	8.4169	1	6861900			47015	4577	38984	39006	50466	50466					0.0938912074293512
QVALLRLGP	9	Unmodified	_QVALLRLGP_					0	0	0			REV__MALSU1|p.Y120*|1|0.18|ENSG00000156928|chr7:23300940-23300962|TATACAGATTACTTTGTGATTGT/-|frameshift_variant	REV__MALSU1|p.Y120*|1|0.18|ENSG00000156928|chr7:23300940-23300962|TATACAGATTACTTTGTGATTGT/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	483.29290771484375	2	483.808377	965.6022	-0.79707	-0.00038563	-0.087786	-4.2472E-05	-0.88486	-0.0004281	483.80814900284224	94.543	0.85136	92.647	92.409	93.261	-1.8956					32	16	3	0	0	0	0.027462	1	6130	6130		50.025	9.4519	1	64876	+		47016	20504	38985	39007	50467	50467					0.11802343439455854
QVANKKRE	8	Unmodified	_QVANKKRE_					0	0	0			REV__tr|A0A553SP32|A0A553SP32_NIACIChromosomepartitionproteinSmcOS=NialliacirculansOX=1397GN=smcPE=3SV=1	REV__tr|A0A553SP32|A0A553SP32_NIACIChromosomepartitionproteinSmcOS=NialliacirculansOX=1397GN=smcPE=3SV=1	MSMS	OvCa9_classI_Rep4_	4	486.7850036621094	2	486.78289	971.551228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.756	1	32.907	32.407	33.407	-2.849								0	0	0	0.30129	1	1175	1175		45.952	0	1		+		47017	30484	38986	39008	50468	50468					0.06431394394610379
QVANLQMKI	9	Unmodified	_QVANLQMKI_					0	0	0		DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.F3496Wfs*92|1|0.14|ENSG00000197102|chr14:102034043-102034044|-/GACCTGGCAGCTGTCGAGGC|frameshift_variant;DYNC1H1|p.P2596Tfs*19|1|0.06|ENSG00000197102|chr14:102016936-102016937|-/A|frameshift_variant;DYNC1H1|p.E1316*|1|0.12|ENSG00000197102|chr14:102000128-102000129|-/C|frameshift_variant;DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	522.7969970703125	2	522.797152	1043.57975	1.7866	0.00093404	0.7533	0.00039382	2.5399	0.0013279	522.7972835129202	86.949	0.41294	86.949	86.761	87.174	0					15	9	3	0	0	0	0.16524	1	9194	9194		82.305	0	1	723540			47018	767;768	38987	39009	50469	50469					0.059703759795411315
QVAPAAPVEP	10	Unmodified	_QVAPAAPVEP_					0	0	0		nc|ENSG00000166073|Q14439-2|GPR176;nc|ENSG00000166073|Q14439-3|GPR176;ENSG00000166073|ENST00000561100|GPR176	nc|ENSG00000166073|Q14439-2|GPR176	nc|ENSG00000166073|Q14439-2|GPR176	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.7381591796875	2	489.766374	977.518196	0.2589	0.0001268	-0.34054	-0.00016678	-0.08164	-3.9985E-05	489.76601465734666	78.566	0.89555	75.793	75.549	76.445	-2.7728					33	18	2	0	0	0	0.026688	1	6356	6356		40.778	6.6056	1	103940			47019	6634	38988	39010	50470	50470					0.02853767551891906
QVAPPGAPPQ	10	Unmodified	_QVAPPGAPPQ_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400	REV__nc|ENSG00000183495|Q96L91-4|EP400	MULTI-SECPEP	OvCa9_classI_Rep3	3	481.8065490722656	2	481.258717	960.50288	-0.90392	-0.00043502	1.0928	0.00052593	0.18889	9.0907E-05	481.258996941159	86.867	0.96552	84.69	84.431	85.396	-2.1768					34	18	3	0	0	0	0.026635	1	5190	5190		39.253	12.56	1	47434	+		47020	22365	38989	39011	50471	50471					0.02104900754704886
QVAPPGAPPQ	10	Unmodified	_QVAPPGAPPQ_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400	REV__nc|ENSG00000183495|Q96L91-4|EP400	MULTI-MATCH	OvCa9_classI_Rep2	2		2	481.258717	960.50288	-0.54832	-0.00026388	0.60626	0.00029177	0.057946	2.7887E-05	481.25886471074546	86.202	0.7813	84.712	84.493	85.274	-1.4906	-0.028721	-4.8856E-05	NaN	39.253	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22636	+		47021	22365	38989	39011							0.02104900754704886
QVAQLIANQ	9	Unmodified	_QVAQLIANQ_					0	0	0			REV__ENSG00000231824|ENST00000434239|AKAIN1	REV__ENSG00000231824|ENST00000434239|AKAIN1	MULTI-MSMS	OvCa9_classI_Rep2	2	492.7767333984375	2	492.777274	983.539994	-0.024003	-1.1828E-05	-0.011704	-5.7673E-06	-0.035707	-1.7595E-05	492.7770102263904	75.315	1.7621	73.461	72.704	74.466	-1.854					86	33	4	0	0	0	0.55588	1	6204	6204		37.159	1.5408	1	386480	+		47022	23388	38990	39012	50472	50472					0.04756572300470907
QVAQVAVK	8	Unmodified	_QVAQVAVK_					0	0	0			REV__ENST00000498115.1_1_1:228334565-228335341:+|nuORF	REV__ENST00000498115.1_1_1:228334565-228335341:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	421.7582702636719	2	421.758352	841.502152	1.3122	0.00055342	-1.0755	-0.0004536	0.23667	9.9818E-05	421.7577701350753	29.614	1.4673	26.904	26.682	28.15	-2.7097					69	29	4	0	0	0	0.47599	2	716	716;777		79.939	0	1	542820	+		47023	19866	38991	39013	50473;50474	50473					0.07506106105665822
QVARAVLHV	9	Unmodified	_QVARAVLHV_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2;HSPG2|p.R2480Gfs*14|1|0.14|ENSG00000142798|chr1:21850049-21850049|G/-|frameshift_variant;HSPG2|p.S2573Afs*18|1|0.18|ENSG00000142798|chr1:21848664-21848664|G/-|frameshift_variant	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	OvCa99_classI_Rep5	1	496.8047790527344	2	496.803626	991.592698	0.087201	4.3322E-05	-0.64008	-0.000318	-0.55288	-0.00027467	496.80318283066106	57.66	0.79848	57.66	57.396	58.194	0					48	18	4	0	0	0	0.25214	2	4844	4844;4873		68.485	2.5872	1	2749400			47024	4996	38992	39014	50475;50476	50475					0.09656575153940139
QVASKAEENLL	11	Unmodified	_QVASKAEENLL_					0	0	0		ENST00000530314.5_1_16:70543112-70557304:-|nuORF;ENST00000562200.5_1_16:70543798-70557434:-|nuORF;nc|ENSG00000103051|Q9H9E3-2|COG4;nc|ENSG00000103051|Q9H9E3-3|COG4;nc|ENSG00000103051|Q9H9E3|COG4;ENSG00000103051|ENST00000323786|COG4	ENST00000530314.5_1_16:70543112-70557304:-|nuORF	ENST00000530314.5_1_16:70543112-70557304:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.19049072265625	3	401.218949	1200.63502	1.0282	0.00041255	0.1222	4.903E-05	1.1504	0.00046158	401.2188172187376	33.558	0.44308	33.558	33.285	33.728	0					16	8	3	0	0	0	0.025315	1	1518	1518		33.039	0	1	138900			47025	13288	38993	39015	50477	50477					0.04272460980996584
QVAYPDYCP	9	Unmodified	_QVAYPDYCP_					0	0	0		nc|ENSG00000117791|Q969Z3-2|MTARC2;ENSG00000117791|ENST00000366913|MTARC2	nc|ENSG00000117791|Q969Z3-2|MTARC2	nc|ENSG00000117791|Q969Z3-2|MTARC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.2176513671875	2	528.228768	1054.44298	-1.7141	-0.00090543	-2.3953	-0.0012653	-4.1093	-0.0021707	528.2288007929474	145.59	0.30643	144.15	143.94	144.25	-1.4357					7	5	2	0	0	0	0.027462	1	14291	14291		10.866	0	1	4431.8			47026	3278	38994	39016	50478	50478					-0.0820615797085793
QVAYTFDAGP	10	Unmodified	_QVAYTFDAGP_					0	0	0		ENST00000561895.1_1_16:88718935-88721317:-|nuORF	ENST00000561895.1_1_16:88718935-88721317:-|nuORF	ENST00000561895.1_1_16:88718935-88721317:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.346435546875	2	534.753464	1067.49238	-2.0031	-0.0010711	3.314	0.0017722	1.3109	0.00070102	534.7550735743697	43.89	0.85567	40.883	40.589	41.444	-3.0074					24	16	2	0	0	0	0.026891	1	2156	2156		31.53	0	1	37250			47027	13762	38995	39017	50479	50479					-0.03867126690374789
QVCPRGRPCF	10	Unmodified	_QVCPRGRPCF_					0	0	0			REV__ENST00000303921.2_1_7:124404749-124405061:-|nuORF	REV__ENST00000303921.2_1_7:124404749-124405061:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	581.3344116210938	2	581.784053	1161.55355	-0.59356	-0.00034533	-0.76051	-0.00044245	-1.3541	-0.00078778	581.7836249336247	47.483	0.95612	44.375	44.133	45.09	-3.1077					32	18	2	0	0	0	0.026752	1	2572	2572		27.882	0	1	395190	+		47028	24272	38996	39018	50480	50480					-0.02076216463592573
QVCPRGRPCF	10	Unmodified	_QVCPRGRPCF_					0	0	0			REV__ENST00000303921.2_1_7:124404749-124405061:-|nuORF	REV__ENST00000303921.2_1_7:124404749-124405061:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	581.784053	1161.55355	-0.80715	-0.00046959	0.33722	0.00019619	-0.46993	-0.0002734	581.7838442565794	47.236	0.79193	44.526	44.242	45.034	-2.7097	0.075449	0.00074735	NaN	27.882	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70008	+		47029	24272	38996	39018							-0.02076216463592573
QVCQAFMRYLF	11	Unmodified	_QVCQAFMRYLF_					0	0	0			REV__ENST00000379561.5_1_13:41132958-41133663:-|nuORF	REV__ENST00000379561.5_1_13:41132958-41133663:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	469.8047790527344	3	469.230026	1404.66825	1.6714	0.00078425	3.0411	0.001427	4.7125	0.0022112	469.2317758147797	89.268	0.84085	87.901	87.675	88.516	-1.3676					20	16	3	0	0	0	0.025818	1	7824	7824		36.318	0	1	21579	+		47030	25158	38997	39019	50481	50481					-0.017899517722980818
QVDEHARPQT	10	Unmodified	_QVDEHARPQT_					0	0	0		ENSG00000167315|ENST00000285093|ACAA2	ENSG00000167315|ENST00000285093|ACAA2	ENSG00000167315|ENST00000285093|ACAA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.8085327148438	2	590.788901	1179.56325	1.2733	0.00075225	2.3364	0.0013803	3.6097	0.0021326	590.790420776466	146.12	0.2998	146.12	145.93	146.23	0					7	5	2	0	0	0	0.026867	1	17086	17086		28.081	0	1	28364			47031	6779	38998	39020	50482	50482					-0.019350336528759726
QVDGGRLEAEL	11	Unmodified	_QVDGGRLEAEL_					0	0	0		ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1	ENSG00000135480|ENST00000331817|KRT7	ENSG00000135480|ENST00000331817|KRT7	MULTI-MSMS	OvCa9_classI_Rep3	3	593.807373046875	2	593.806759	1185.59897	-0.96533	-0.00057322	-0.046235	-2.7454E-05	-1.0116	-0.00060067	593.8068862261109	84.543	1.3672	82.283	81.927	83.295	-2.261					95	27	5	0	0	0	0.17265	2	4904	4904;4908		83.647	8.6037	1	607860		+	47032	646	38999	39021	50483;50484	50483					0.013590038041684238
QVDGGRLEAEL	11	Unmodified	_QVDGGRLEAEL_					0	0	0		ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1	ENSG00000135480|ENST00000331817|KRT7	ENSG00000135480|ENST00000331817|KRT7	MULTI-MSMS	OvCa9_classI_Rep4_	4	593.8079833984375	2	593.806759	1185.59897	1.511	0.00089723	-2.1392	-0.0012703	-0.62818	-0.00037302	593.805633048709	84.859	1.2573	82.212	81.885	83.142	-2.6463					70	25	4	0	0	0	0.14191	2	7119	7108;7119		88.177	16.153	1	484660		+	47033	646	38999	39021	50485;50486	50486					0.013590038041684238
QVDHLNLL	8	Unmodified	_QVDHLNLL_					0	0	0		ENSG00000104805|ENST00000405315|NUCB1;NUCB1-FAM83E|1|fusion	ENSG00000104805|ENST00000405315|NUCB1	ENSG00000104805|ENST00000405315|NUCB1	MULTI-MSMS	OvCa9_classI_Rep3	3	476.2662048339844	2	476.266542	950.51853	1.1138	0.00053047	-1.3481	-0.00064206	-0.23431	-0.00011159	476.2657032208111	103.93	1.4065	102.49	102.13	103.54	-1.4347					75	26	4	0	0	0	0.72896	1	7220	7220		37.159	0	1	277960			47034	2393	39000	39022	50487	50487					0.04129187271757928
QVDLYFTEV	9	Unmodified	_QVDLYFTEV_					0	0	0			REV__tr|A0A553SMP5|A0A553SMP5_NIACIGlutamatesynthaselargesubunitOS=NialliacirculansOX=1397GN=CEQ21_22985PE=3SV=1	REV__tr|A0A553SMP5|A0A553SMP5_NIACIGlutamatesynthaselargesubunitOS=NialliacirculansOX=1397GN=CEQ21_22985PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.79443359375	2	557.276772	1112.53899	0.28559	0.00015915	-0.96557	-0.00053809	-0.67998	-0.00037894	557.2759869454621	62.774	0.82457	59.316	59.061	59.885	-3.4577					23	16	2	0	0	0	0.027462	1	4403	4403		19.104	0	1	81901	+		47035	30356	39001	39023	50488	50488					-0.012776868590890444
QVDPPLHGPP	10	Unmodified	_QVDPPLHGPP_					0	0	0		ENSG00000187187|ENST00000347077|ZNF546	ENSG00000187187|ENST00000347077|ZNF546	ENSG00000187187|ENST00000347077|ZNF546	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.7783203125	2	528.777274	1055.53999	-1.5505	-0.00081986	4.4233	0.0023389	2.8728	0.0015191	528.7806907284939	95.173	0.40057	92.705	92.36	92.761	-2.4685					9	7	2	0	0	0	0.027021	1	8366	8366		29.15	0	1	10732			47036	8392	39002	39024	50489	50489					0.01444572300465552
QVDQINKLL	9	Unmodified	_QVDQINKLL_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.3444213867188	2	535.813856	1069.61316	-1.9418	-0.0010404	3.937	0.0021095	1.9952	0.0010691	535.8153037709967	45.014	1.1956	41.976	41.714	42.909	-3.0385					39	22	3	0	0	0	0.027462	1	2312	2312		31.955	1.4512	1	700520	+		47037	16701	39003	39025	50490	50490					0.08113701023103204
QVDSYRITI	9	Unmodified	_QVDSYRITI_					0	0	0		ACACB|p.E873Q|1|0.07|ENSG00000076555|chr12:109197143-109197143|G/C|missense_variant	ACACB|p.E873Q|1|0.07|ENSG00000076555|chr12:109197143-109197143|G/C|missense_variant	ACACB|p.E873Q|1|0.07|ENSG00000076555|chr12:109197143-109197143|G/C|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	547.7979125976562	2	547.795663	1093.57677	0.74799	0.00040974	2.3168	0.0012692	3.0648	0.0016789	547.7965295797063	153.35	0.69128	153.35	153.05	153.74	0					23	13	3	0	0	0	0.45842	1	17974	17974		46.457	2.34	1	59926			47038	15	39004	39026	50491	50491					0.03372824126381602
QVDYVFQQL	9	Unmodified	_QVDYVFQQL_					0	0	0			REV__nc|ENSG00000196730|P53355-4|DAPK1	REV__nc|ENSG00000196730|P53355-4|DAPK1	MULTI-MSMS	OvCa9_classI_Rep2	2	570.2902221679688	2	570.290214	1138.56587	-2.1859	-0.0012466	2.3623	0.0013472	0.17642	0.00010061	570.2913769953735	118.87	1.3845	118.72	118.33	119.72	-0.14755					75	27	4	0	0	0	0.3076	1	11441	11441		62.107	0.41614	1	143160	+		47039	22860	39005	39027	50492	50492					0.0021342175209611014
QVEEMMELL	9	Unmodified	_QVEEMMELL_					0	0	0			REV__TMEM48-MTMR12|1|fusion	REV__TMEM48-MTMR12|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep3	3	561.7998657226562	2	561.264493	1120.51443	-1.3542	-0.00076006	3.787	0.0021255	2.4328	0.0013654	561.7693182808054	84.14	0.18375	81.879	81.79	81.974	-2.261					5	3	2	0	0	0	0.027091	1	4861	4861		94.006	27.577	1	9600.1	+		47040	29514	39006	39028	50493	50493					-0.04100406328461759
QVEGDAAETPP	11	Unmodified	_QVEGDAAETPP_					0	0	0		ENST00000519737.1_1_8:29885889-29886273:+|nuORF;nc|ENSG00000169032|Q02750-2|MAP2K1;ENSG00000169032|ENST00000307102|MAP2K1;SMAD3-MAP2K1|1|fusion	ENST00000519737.1_1_8:29885889-29886273:+|nuORF	ENST00000519737.1_1_8:29885889-29886273:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.2626342773438	2	557.256568	1112.49858	1.7937	0.00099956	1.8597	0.0010363	3.6534	0.0020359	557.7600175661734	130.55	0.33585	130.55	130.34	130.68	0					10	6	2	0	0	0	0.025681	1	15136	15136		34.173	17.699	1	34689			47041	6969	39007	39029	50494	50494					-0.053166532495197316
QVEGPESL	8	Unmodified	_QVEGPESL_					0	0	0		nc|ENSG00000179889|Q6P996-3|PDXDC1;nc|ENSG00000179889|Q6P996-4|PDXDC1;nc|ENSG00000179889|Q6P996-5|PDXDC1;ENSG00000179889|ENST00000396410|PDXDC1	nc|ENSG00000179889|Q6P996-3|PDXDC1	nc|ENSG00000179889|Q6P996-3|PDXDC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	430.24127197265625	2	429.713808	857.413062	-0.63495	-0.00027285	2.4992	0.0010739	1.8642	0.00080108	429.714798057947	37.354	0.3716	37.354	37.159	37.531	0					17	7	3	0	0	0	0.028476	1	2017	2017		18.324	0	1	82109			47042	7846	39008	39030	50495	50495					-0.021347736445136434
QVEKLKEV	8	Unmodified	_QVEKLKEV_					0	0	0		ENSG00000110921|ENST00000228510|MVK	ENSG00000110921|ENST00000228510|MVK	ENSG00000110921|ENST00000228510|MVK	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.2394714355469	2	486.78985	971.565146	-0.67684	-0.00032948	0.33025	0.00016076	-0.3466	-0.00016872	486.78988175022323	53.282	0.38807	53.282	53.087	53.475	0					21	8	4	0	0	0	0.028476	1	4220	4220		56.721	5.3856	1	888330			47043	2804	39009	39031	50496	50496					0.07822627103053037
QVELLSIIM	9	Unmodified	_QVELLSIIM_					0	0	0		ENST00000481102.5_1_1:85130177-85130213:-|nuORF	ENST00000481102.5_1_1:85130177-85130213:-|nuORF	ENST00000481102.5_1_1:85130177-85130213:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	523.3065795898438	2	523.301736	1044.58892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.02	1	138.52	138.02	139.02	-1.4952								0	0	0	0.18309	1	13657	13657		30.504	0	1				47044	12539	39010	39032	50497	50497					0.06840724545213561
QVEQDEELP	9	Unmodified	_QVEQDEELP_					0	0	0		ENST00000488036.5_1_1:53553683-53555791:-|nuORF;ENSG00000162383|ENST00000371494|SLC1A7	ENST00000488036.5_1_1:53553683-53555791:-|nuORF	ENST00000488036.5_1_1:53553683-53555791:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.796630859375	2	543.751118	1085.48768	2.382	0.0012952	2.2657	0.001232	4.6477	0.0025272	543.7532904254023	107.5	0.24976	107.5	107.4	107.65	0					7	5	2	0	0	0	0.027462	1	12118	12118		21.96	0	1	131700			47045	6174	39011	39033	50498	50498					-0.05164055623799868
QVETMVLLL	9	Unmodified	_QVETMVLLL_					0	0	0		nc|ENSG00000173662|Q7RTX1-3|TAS1R1;ENSG00000173662|ENST00000333172|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	nc|ENSG00000173662|Q7RTX1-3|TAS1R1	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3031616210938	2	523.301736	1044.58892	0.92494	0.00048402	2.5178	0.0013175	3.4427	0.0018016	523.3029320659484	30.44	0.93634	27.73	27.557	28.494	-2.7097					40	18	3	0	0	0	0.56889	1	847	847		35.618	0	1	187740			47046	7403	39012	39034	50499	50499					0.06840724545213561
QVETRKQSI	9	Unmodified	_QVETRKQSI_					0	0	0		ENST00000531101.5_1_11:4621508-4624512:-|nuORF;ENSG00000167333|ENST00000300747|TRIM68;ENST00000532108.1_1_11:4623360-4626734:-|nuORF	ENST00000531101.5_1_11:4621508-4624512:-|nuORF	ENST00000531101.5_1_11:4621508-4624512:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	544.808837890625	2	544.806562	1087.59857	-0.37112	-0.00020219	2.6293	0.0014324	2.2581	0.0012303	544.8076793315723	78.589	2.5947	76.237	75.253	77.848	-2.3527					128	51	4	0	0	0	0.2422	1	4206	4206		69.628	6.0938	1	2782000			47047	6782	39013	39035	50500	50500					0.05827628874953916
QVFAETREALP	11	Unmodified	_QVFAETREALP_					0	0	0			REV__nc|ENSG00000169826|Q8N6G5-2|CSGALNACT2	REV__nc|ENSG00000169826|Q8N6G5-2|CSGALNACT2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	631.3572387695312	2	630.832777	1259.651	-0.78593	-0.00049579	-4.057	-0.0025593	-4.843	-0.0030551	630.8298663793959	66.27	0.77906	62.78	62.418	63.198	-3.4902					27	15	2	0	0	0	0.025861	1	4804	4804		23.523	0	1	84888	+		47048	21485	39014	39036	50501	50501					0.03156167217912298
QVFAETREALP	11	Unmodified	_QVFAETREALP_					0	0	0			REV__nc|ENSG00000169826|Q8N6G5-2|CSGALNACT2	REV__nc|ENSG00000169826|Q8N6G5-2|CSGALNACT2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	630.832777	1259.651	0.26678	0.0001683	-5.5678	-0.0035123	-5.301	-0.0033441	630.829290797492	65.412	0.90193	62.716	62.417	63.319	-2.6958	-0.031891	-0.00044971	NaN	30.318	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44507	+		47049	21485	39014	39036							0.03156167217912298
QVFLPQAIR	9	Unmodified	_QVFLPQAIR_					0	0	0		ENST00000469480.1_1_11:62342568-62343792:-|nuORF;ENSG00000149016|ENST00000476907|TUT1	ENST00000469480.1_1_11:62342568-62343792:-|nuORF	ENST00000469480.1_1_11:62342568-62343792:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	536.3170166015625	2	536.319109	1070.62366	-0.69356	-0.00037197	-3.3628	-0.0018035	-4.0563	-0.0021755	536.3171918665403	36.295	0.58839	36.295	36.074	36.662	0					27	12	3	0	0	0	0.22961	1	1897	1897		71.296	2.5089	1	998240			47050	5435	39015	39037	50502	50502					0.09117728468163477
QVFQEWWRRYM	11	Unmodified	_QVFQEWWRRYM_					0	0	0			REV__nc|ENSG00000090061|O75909-2|CCNK	REV__nc|ENSG00000090061|O75909-2|CCNK	MULTI-SECPEP	OvCa9_classI_Rep2	2	543.337646484375	3	543.597877	1627.7718	-2.3784	-0.0012929	-0.84564	-0.00045969	-3.2241	-0.0017526	543.5972462709151	62.93	0.42208	60.186	59.951	60.374	-2.7444					12	7	2	0	0	0	0.026497	1	4728	4728		6.001	2.382	1	12158	+		47051	17218	39016	39038	50503	50503					-0.016973283402876405
QVFQLKPGL	9	Unmodified	_QVFQLKPGL_					0	0	0		ENSG00000147894|ENST00000380003|C9orf72	ENSG00000147894|ENST00000380003|C9orf72	ENSG00000147894|ENST00000380003|C9orf72	MULTI-SECPEP	OvCa9_classI_Rep2	2	516.2786865234375	2	515.30821	1028.60187	-1.0818	-0.00055744	3.8581	0.0019881	2.7763	0.0014307	515.3106046484587	68.115	1.1355	65.454	64.991	66.127	-2.661					59	22	4	0	0	0	0.027462	1	5299	5299		23.042	1.0826	1	67311			47052	5380	39017	39039	50504	50504					0.08870923719609891
QVFQLKPGL	9	Unmodified	_QVFQLKPGL_					0	0	0		ENSG00000147894|ENST00000380003|C9orf72	ENSG00000147894|ENST00000380003|C9orf72	ENSG00000147894|ENST00000380003|C9orf72	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	515.30821	1028.60187	-0.49288	-0.00025399	4.7639	0.0024549	4.271	0.0022009	515.3119603643836	69.056	1.127	65.565	65.113	66.24	-3.4902	0.055457	0.0008215	NaN	16.473	50	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102130			47053	5380	39017	39039							0.08870923719609891
QVFTLPKVSA	10	Unmodified	_QVFTLPKVSA_					0	0	0		ENST00000479155.1_1_17:18144737-18145166:+|nuORF	ENST00000479155.1_1_17:18144737-18145166:+|nuORF	ENST00000479155.1_1_17:18144737-18145166:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.31591796875	2	545.318774	1088.623	-0.51372	-0.00028014	-3.2363	-0.0017648	-3.75	-0.002045	545.3169196404446	142.63	4.7541	141.19	139.73	144.49	-1.4427					172	91	2	0	0	0	0.762	1	14051	14051		23.523	1.8369	1	155190			47054	12502	39018	39040	50505	50505					0.08222889028479585
QVGASILSPL	10	Unmodified	_QVGASILSPL_					0	0	0		tr|A0A553ST65|A0A553ST65_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_04155PE=4SV=1	tr|A0A553ST65|A0A553ST65_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_04155PE=4SV=1	tr|A0A553ST65|A0A553ST65_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_04155PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.3223876953125	2	492.78985	983.565146	0.4209	0.00020741	-4.2923	-0.0021152	-3.8714	-0.0019078	492.7893860277026	78.308	0.82008	76.568	75.987	76.807	-1.7398					32	15	3	0	0	0	0.026826	1	6537	6537		36.447	14.487	1	89535			47055	34463	39019	39041	50506	50506					0.07270627103071092
QVGEKTPK	8	Unmodified	_QVGEKTPK_					0	0	0		VASP|p.E358Dfs*21|1|0.1|ENSG00000125753|chr19:45525971-45525972|-/CAAGACCAGCCTGGCCAACATGGTGAAACCC|frameshift_variant;ENSG00000125753|ENST00000245932|VASP;ENST00000590459.1_1_19:46026044-46026986:+|nuORF;ENST00000588463.1_1_19:46026053-46027140:+|nuORF	VASP|p.E358Dfs*21|1|0.1|ENSG00000125753|chr19:45525971-45525972|-/CAAGACCAGCCTGGCCAACATGGTGAAACCC|frameshift_variant	VASP|p.E358Dfs*21|1|0.1|ENSG00000125753|chr19:45525971-45525972|-/CAAGACCAGCCTGGCCAACATGGTGAAACCC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.2931823730469	2	443.753267	885.491981	0.82494	0.00036607	0.60292	0.00026755	1.4279	0.00063362	443.7531933933562	56.559	0.40437	56.559	56.34	56.744	0					14	9	2	0	0	0	0.028476	1	4715	4715		21.96	7.095	1	264610			47056	3732	39020	39042	50507	50507					0.044654983804207404
QVGESEYNR	9	Unmodified	_QVGESEYNR_					0	0	0		ENST00000593783.1_1_19:24289421-24289472:+|nuORF	ENST00000593783.1_1_19:24289421-24289472:+|nuORF	ENST00000593783.1_1_19:24289421-24289472:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	540.8408813476562	2	541.249077	1080.4836	-0.40414	-0.00021874	-1.9634	-0.0010627	-2.3675	-0.0012814	541.2479517215751	31.294	0.49185	28.584	28.396	28.888	-2.7097					12	9	2	0	0	0	0.027462	1	945	945		42.396	0	1	9866.8			47057	14157	39021	39043	50508	50508					-0.053421003268795175
QVGGEKIL	8	Unmodified	_QVGGEKIL_					0	0	0			REV__ENST00000420492.2_1_9:101369387-101369513:+|nuORF	REV__ENST00000420492.2_1_9:101369387-101369513:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	422.25335693359375	2	422.25036	842.486168	-0.15229	-6.4303E-05	-3.0193	-0.0012749	-3.1716	-0.0013392	422.2498660709255	53.842	0.64407	53.842	53.609	54.253	0					29	15	3	0	0	0	0.45246	1	4303	4303		82.305	0	1	1132100	+		47058	18605	39022	39044	50509	50509					0.05862399868760804
QVGGEKIL	8	Unmodified	_QVGGEKIL_					0	0	0			REV__ENST00000420492.2_1_9:101369387-101369513:+|nuORF	REV__ENST00000420492.2_1_9:101369387-101369513:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	422.25036	842.486168	-0.15229	-6.4303E-05	-3.0193	-0.0012749	-3.1716	-0.0013392	422.2498660709255	53.842	0.64407	53.842	53.609	54.253	0	0	0	NaN	82.305	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1132100	+		47059	18605	39022	39044							0.05862399868760804
QVGLGASILAL	11	Unmodified	_QVGLGASILAL_					0	0	0		nc|ENSG00000173567|Q8IZF5-2|ADGRF3;nc|ENSG00000173567|Q8IZF5-3|ADGRF3;ENSG00000173567|ENST00000651242|ADGRF3;nc|ENSG00000173567|Q8IZF5|ADGRF3;ENST00000459892.5_1_2:26531956-26538428:-|nuORF	nc|ENSG00000173567|Q8IZF5-2|ADGRF3	nc|ENSG00000173567|Q8IZF5-2|ADGRF3	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.79296875	2	521.318774	1040.623	1.4433	0.00075243	0.29847	0.0001556	1.7418	0.00090802	521.3189758936185	92.654	0.54228	92.654	92.343	92.885	0					26	11	3	0	0	0	0.025344	1	10002	10002		33.922	0	1	2555100			47060	7389	39023	39045	50510	50510					0.10430889028475576
QVGMFGLTFF	10	Unmodified	_QVGMFGLTFF_					0	0	0		tr|A0A553SLI4|A0A553SLI4_NIACIProbablemultidrugresistanceproteinNorMOS=NialliacirculansOX=1397GN=CEQ21_20695PE=3SV=1	tr|A0A553SLI4|A0A553SLI4_NIACIProbablemultidrugresistanceproteinNorMOS=NialliacirculansOX=1397GN=CEQ21_20695PE=3SV=1	tr|A0A553SLI4|A0A553SLI4_NIACIProbablemultidrugresistanceproteinNorMOS=NialliacirculansOX=1397GN=CEQ21_20695PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	574.3085327148438	2	573.786253	1145.55795	-0.089142	-5.1149E-05	-1.2037	-0.00069064	-1.2928	-0.00074179	574.2875742267873	126.65	0.39452	126.41	126.15	126.54	-0.2359					11	7	2	0	0	0	0.026665	1	12369	12369		51.335	17.414	1	10933			47061	33726	39024	39046	50511	50511					-0.009004287690459023
QVGRKKRW	8	Unmodified	_QVGRKKRW_					0	0	0		ENST00000255784.5_1_22:42221829-42221970:+|nuORF	ENST00000255784.5_1_22:42221829-42221970:+|nuORF	ENST00000255784.5_1_22:42221829-42221970:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.27685546875	2	529.322517	1056.63048	-0.45856	-0.00024272	-1.3771	-0.00072894	-1.8357	-0.00097167	529.3216613090026	61.266	0.92757	61.266	60.984	61.912	0					52	21	4	0	0	0	0.028476	1	5377	5377		31.955	8.9124	1	3402400			47062	9824	39025	39047	50512	50512					0.10443086139412117
QVHKNKRH	8	Unmodified	_QVHKNKRH_					0	0	0			REV__ENSG00000188906|ENST00000298910|LRRK2	REV__ENSG00000188906|ENST00000298910|LRRK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7727661132812	2	523.801949	1045.58934	1.5753	0.00082516	1.8981	0.00099423	3.4734	0.0018194	523.8029170689996	87.131	0.36503	87.131	87.013	87.378	0					12	8	2	0	0	0	0.028476	1	9217	9217		33.516	22.65	1	246460	+		47063	22748	39026	39048	50513	50513					0.06837325099945701
QVHLGAAAQ	9	Unmodified	_QVHLGAAAQ_					0	0	0		ENST00000485008.1_1_22:24563230-24569157:+|nuORF;nc|ENSG00000099991|Q9Y6J0-2|CABIN1;ENSG00000099991|ENST00000263119|CABIN1	ENST00000485008.1_1_22:24563230-24569157:+|nuORF	ENST00000485008.1_1_22:24563230-24569157:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	447.762451171875	2	447.743234	893.471915	-0.57058	-0.00025548	-2.6485	-0.0011858	-3.2191	-0.0014413	447.7442148128117	41.981	0.76728	39.001	38.593	39.361	-2.9804					27	14	3	0	0	0	0.027462	1	1941	1941		35.618	3.6634	1	19724			47064	1990	39027	39049	50514	50514					0.020917474404654968
QVHSLKLPLR	10	Unmodified	_QVHSLKLPLR_					0	0	0			REV__ENSG00000173621|ENST00000309602|LRFN4	REV__ENSG00000173621|ENST00000309602|LRFN4	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.8233642578125	2	595.87204	1189.72953	2.0746	0.0012362	0.70997	0.00042305	2.7846	0.0016592	595.8723142088608	128.84	0.2308	128.84	128.7	128.93	0					8	4	2	0	0	0	0.026891	1	14930	14930		31.53	4.4825	1	33632	+		47065	21791	39028	39050	50515	50515					0.14225064313654912
QVIAKIIPK	9	Unmodified	_QVIAKIIPK_					0	0	0		tr|A0A553SNF8|A0A553SNF8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24305PE=4SV=1	tr|A0A553SNF8|A0A553SNF8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24305PE=4SV=1	tr|A0A553SNF8|A0A553SNF8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24305PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.3397216796875	2	505.342052	1008.66955	-0.92523	-0.00046756	1.9611	0.00099102	1.0359	0.00052346	505.3431954648346	137.22	0.44263	136.99	136.79	137.23	-0.22696					10	8	2	0	0	0	0.027462	1	13668	13668		24.203	0	1	30862			47066	33923	39029	39051	50516	50516					0.16556373650405476
QVIAKITKL	9	Unmodified	_QVIAKITKL_					0	0	0		ENSG00000204764|ENST00000523189|RANBP17;ENST00000523727.1_1_5:170308890-170323149:+|nuORF;ENST00000519130.5_1_5:170289037-170336799:+|nuORF;ENST00000443155.5_1_5:170288887-170338173:+|nuORF;nc|ENSG00000204764|Q9H2T7-2|RANBP17;RANBP17|p.V862Afs*8|1|0.46|ENSG00000204764|chr5:171241086-171241108|AATGTACTCCAGGCTTTTGTCAA/-|frameshift_variant	ENSG00000204764|ENST00000523189|RANBP17	ENSG00000204764|ENST00000523189|RANBP17	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.3025207519531	2	507.33951	1012.66447	0.57693	0.0002927	-1.6744	-0.00084947	-1.0974	-0.00055677	507.3385190654663	91.746	0.84172	90.511	90.272	91.114	-1.2355					20	15	2	0	0	0	0.027462	1	8148	8148		49.442	5.3247	1	43040			47067	9028	39030	39052	50517	50517					0.1586406978777859
QVIAMEWR	8	Unmodified	_QVIAMEWR_					0	0	0		ENST00000599402.1_1_19:58193384-58197878:+|nuORF	ENST00000599402.1_1_19:58193384-58197878:+|nuORF	ENST00000599402.1_1_19:58193384-58197878:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.29345703125	2	516.768394	1031.52224	-1.1205	-0.00057904	3.3641	0.0017385	2.2436	0.0011594	516.7701714704589	26.767	0.65055	26.767	26.392	27.043	0					18	12	2	0	0	0	0.028476	1	721	721		45.952	0	1	69177			47068	14210	39031	39053	50518	50518					0.007735337739404713
QVICEVAHVT	10	Unmodified	_QVICEVAHVT_					0	0	0		nc|ENSG00000198053|P78324-4|SIRPA;ENSG00000198053|ENST00000358771|SIRPA;nc|ENSG00000198053|P78324-2|SIRPA;nc|ENSG00000089012|Q9P1W8-4|SIRPG;nc|ENSG00000089012|Q9P1W8-2|SIRPG;ENSG00000089012|ENST00000303415|SIRPG;nc|ENSG00000101307|Q5TFQ8|SIRPB1	nc|ENSG00000198053|P78324-4|SIRPA	nc|ENSG00000198053|P78324-4|SIRPA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.8284912109375	2	549.784241	1097.55393	-0.1414	-7.7742E-05	-3.1484	-0.001731	-3.2898	-0.0018087	549.7824291305943	75.818	1.3303	72.879	72.692	74.023	-2.9389					42	27	2	0	0	0	0.026994	1	6023	6023		13.454	0.49486	1	337900			47069	8777	39032	39054	50519	50519					0.009054817372316393
QVIIFVKSV	9	Unmodified	_QVIIFVKSV_					0	0	0		ENSG00000123136|ENST00000242776|DDX39A;ENST00000587730.5_1_19:14520346-14520718:-|nuORF;ENST00000588692.5_1_19:14519750-14520718:-|nuORF	ENSG00000123136|ENST00000242776|DDX39A	ENSG00000123136|ENST00000242776|DDX39A	MULTI-SECPEP	OvCa9_classI_Rep2	2	516.3030395507812	2	516.826235	1031.63792	-1.0513	-0.00054335	-4.3883	-0.002268	-5.4396	-0.0028113	516.8237992851582	61.419	0.94048	58.659	58.147	59.088	-2.7593					30	17	2	0	0	0	0.027462	1	4605	4605		45.952	1.8352	1	48648			47070	3575	39033	39055	50520	50520					0.12336380896454102
QVIKENNF	8	Unmodified	_QVIKENNF_					0	0	0		tr|A0A7D6VUE7|A0A7D6VUE7_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_11335PE=4SV=1	tr|A0A7D6VUE7|A0A7D6VUE7_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_11335PE=4SV=1	tr|A0A7D6VUE7|A0A7D6VUE7_9CLOTPTSsugartransportersubunitIIBOS=ClostridiumintestinaleOX=36845GN=HZF06_11335PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	496.2654113769531	2	496.263999	990.513445	1.8637	0.0009249	1.0785	0.0005352	2.9422	0.0014601	496.2643848501877	59.438	2.028	56.339	55.347	57.375	-3.0993					83	55	2	0	0	0	0.70469	1	1962	1962		42.396	1.618	1	32593			47071	35181	39034	39056	50521	50521					0.01780883409139733
QVIKNALNL	9	Unmodified	_QVIKNALNL_					0	0	0		tr|A0A7D7A069|A0A7D7A069_9CLOTArginine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=argSPE=3SV=1	tr|A0A7D7A069|A0A7D7A069_9CLOTArginine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=argSPE=3SV=1	tr|A0A7D7A069|A0A7D7A069_9CLOTArginine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=argSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.8114013671875	2	506.811116	1011.60768	-0.91945	-0.00046599	-1.1845	-0.0006003	-2.1039	-0.0010663	506.81048510289196	101.22	3.3613	98.954	98.29	101.65	-2.2665					172	65	4	0	0	0	0.35444	1	9140	9140		56.721	5.3856	1	2669900			47072	35987	39035	39057	50522	50522					0.10234022231270501
QVIKRIVQ	8	Unmodified	_QVIKRIVQ_					0	0	0			REV__nc|ENSG00000025156|Q03933-2|HSF2	REV__nc|ENSG00000025156|Q03933-2|HSF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.7601318359375	2	492.321651	982.62875	-0.041648	-2.0504E-05	-0.87742	-0.00043197	-0.91907	-0.00045248	492.3207962541239	64.732	0.53154	64.732	64.503	65.034	0					27	12	3	0	0	0	0.028476	1	5876	5876		47.916	7.343	1	838100	+		47073	16566	39036	39058	50523	50523					0.13674032330789032
QVILIHTK	8	Unmodified	_QVILIHTK_					0	0	0		ENST00000301919.8_1_11:105878863-105879127:-|nuORF	ENST00000301919.8_1_11:105878863-105879127:-|nuORF	ENST00000301919.8_1_11:105878863-105879127:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.7483825683594	2	476.302927	950.591301	2.9363	0.0013986	-0.72371	-0.0003447	2.2126	0.0010539	476.3024373914429	90.21	0.57265	90.21	89.848	90.421	0					17	13	2	0	0	0	0.028476	1	9692	9692		17.365	0	1	211210			47074	10193	39037	39059	50524	50524					0.11402941065171035
QVILPKDAF	9	Unmodified	_QVILPKDAF_					0	0	0			REV__ENSG00000153132|ENST00000325617|CLGN	REV__ENSG00000153132|ENST00000325617|CLGN	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.7957763671875	2	515.800217	1029.58588	-0.36038	-0.00018588	-2.7375	-0.001412	-3.0979	-0.0015979	515.7982181239315	43.05	0.4263	43.05	42.926	43.353	0					14	9	2	0	0	0	0.027462	1	2802	2802		15.642	5.9362	1	99641	+		47075	20323	39038	39060	50525	50525					0.07227217482682136
QVIQDVHII	9	Unmodified	_QVIQDVHII_					0	0	0			REV__ENSG00000044446|ENST00000379942|PHKA2	REV__ENSG00000044446|ENST00000379942|PHKA2	MULTI-MSMS	OvCa9_classI_Rep2	2	532.8080444335938	2	532.808574	1063.60259	-0.89544	-0.0004771	0.36019	0.00019191	-0.53524	-0.00028518	532.8087564986685	108.82	1.879	108.59	108.32	110.2	-0.22498					103	37	3	0	0	0	0.045281	1	10231	10231		122.18	4.3649	1	513310	+		47076	16648	39039	39061	50526	50526					0.07333718368658992
QVIVHKPLL	9	Unmodified	_QVIVHKPLL_					0	0	0			REV__ENST00000392253.2_1_2:202276919-202277543:-|nuORF	REV__ENST00000392253.2_1_2:202276919-202277543:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	523.8410034179688	2	523.839677	1045.6648	2.4091	0.001262	-0.40573	-0.00021254	2.0034	0.0010495	523.8394983904677	99.097	3.9949	99.097	98.638	102.63	0					211	95	5	0	0	0	0.13154	3	10972	10912;10972;11066		88.643	7.0212	1	55507000	+		47077	25250	39040	39062	50527;50528;50529	50528					0.14379489507655308
QVIVHKPLL	9	Unmodified	_QVIVHKPLL_					0	0	0			REV__ENST00000392253.2_1_2:202276919-202277543:-|nuORF	REV__ENST00000392253.2_1_2:202276919-202277543:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	523.8383178710938	2	523.839677	1045.6648	-0.98777	-0.00051743	0.39092	0.00020478	-0.59685	-0.00031265	523.8398056937525	101.23	2.917	100.47	100.12	103.04	-0.764					140	58	4	0	0	0	0.36502	1	9313	9313		55.504	2.1528	1	863650	+		47078	25250	39040	39062	50530	50530					0.14379489507655308
QVIVHKPLL	9	Unmodified	_QVIVHKPLL_					0	0	0			REV__ENST00000392253.2_1_2:202276919-202277543:-|nuORF	REV__ENST00000392253.2_1_2:202276919-202277543:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	523.8405151367188	2	523.839677	1045.6648	-0.6268	-0.00032835	0.17947	9.4014E-05	-0.44733	-0.00023433	523.8396857548527	102.58	3.3388	101.05	100.63	103.97	-1.5211					147	63	4	0	0	0	0.14739	3	7067	7057;7067;7081		85.359	11.385	1	1024800	+		47079	25250	39040	39062	50531;50532;50533	50532					0.14379489507655308
QVIVHKPLL	9	Unmodified	_QVIVHKPLL_					0	0	0			REV__ENST00000392253.2_1_2:202276919-202277543:-|nuORF	REV__ENST00000392253.2_1_2:202276919-202277543:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.84033203125	2	523.839677	1045.6648	-0.84837	-0.00044441	0.57936	0.00030349	-0.26901	-0.00014092	523.8398892974864	103.3	2.59	101.1	100.67	103.26	-2.1994					128	49	4	0	0	0	0.19716	2	9316	9306;9316		76.847	15.193	1	841680	+		47080	25250	39040	39062	50534;50535	50535					0.14379489507655308
QVKAFPEAR	9	Unmodified	_QVKAFPEAR_					0	0	0		ENST00000606437.2_1_20:56814667-56814961:-|nuORF	ENST00000606437.2_1_20:56814667-56814961:-|nuORF	ENST00000606437.2_1_20:56814667-56814961:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.2930908203125	2	523.293091	1044.57163	-0.26352	-0.0001379	-0.022415	-1.173E-05	-0.28594	-0.00014963	523.2929416887428	38.697	1.0915	35.77	35.502	36.594	-2.9264					46	21	4	0	0	0	0.29717	1	1534	1534		63.306	4.5243	1	203250			47081	14276	39041	39063	50536	50536					0.05112565054423612
QVKAFPEAR	9	Unmodified	_QVKAFPEAR_					0	0	0		ENST00000606437.2_1_20:56814667-56814961:-|nuORF	ENST00000606437.2_1_20:56814667-56814961:-|nuORF	ENST00000606437.2_1_20:56814667-56814961:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	523.293091	1044.57163	-1.0713	-0.00056061	0.71045	0.00037178	-0.36086	-0.00018884	523.2932741084154	38.6	0.64306	35.89	35.667	36.31	-2.7097	0.059749	0.00061602	NaN	63.306	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38915			47082	14276	39041	39063							0.05112565054423612
QVKDGLHPQL	10	Unmodified	_QVKDGLHPQL_					0	0	0		ENST00000406551.2_1_6:150201187-150201547:+|nuORF	ENST00000406551.2_1_6:150201187-150201547:+|nuORF	ENST00000406551.2_1_6:150201187-150201547:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	567.818359375	2	567.81693	1133.61931	2.2411	0.0012725	-0.92848	-0.0005272	1.3126	0.00074533	567.8167216430022	82.333	1.3942	82.333	81.854	83.249	0					77	32	4	0	0	0	0.18931	1	8516	8516		96.034	0.21844	1	1322600			47083	11483	39042	39064	50537	50537					0.05784219254633172
QVKEPRTQKTI	11	Unmodified	_QVKEPRTQKTI_					0	0	0			REV__ENSG00000164151|ENST00000296564|ICE1	REV__ENSG00000164151|ENST00000296564|ICE1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	444.2519226074219	3	443.261259	1326.76195	-0.079307	-3.5154E-05	0.97435	0.00043189	0.89504	0.00039674	443.2615789707825	47.308	1.1131	44.235	43.86	44.973	-3.0724					37	21	2	0	0	0	0.025677	1	2528	2528		25.068	0	1	48070	+		47084	20949	39043	39065	50538	50538					0.11163806925992503
QVKGLLQQ	8	Unmodified	_QVKGLLQQ_					0	0	0			REV__chr1:946497-948131|135|14.54|0.78|4.23|-|0|None,NOC2L|1	REV__chr1:946497-948131|135|14.54|0.78|4.23|-|0|None,NOC2L|1	MULTI-MSMS	OvCa99_classI_Rep5	1	457.2767028808594	2	457.276909	912.539266	-0.88151	-0.00040309	0.71932	0.00032893	-0.16218	-7.4163E-05	457.27705102218437	27.728	0.64936	27.728	27.491	28.14	0					27	12	3	0	0	0	0.65582	1	848	848		52.299	0	1	178660	+		47085	15837	39044	39066	50539	50539					0.07949777651424483
QVKGLLQQ	8	Unmodified	_QVKGLLQQ_					0	0	0			REV__chr1:946497-948131|135|14.54|0.78|4.23|-|0|None,NOC2L|1	REV__chr1:946497-948131|135|14.54|0.78|4.23|-|0|None,NOC2L|1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	457.276909	912.539266	1.6941	0.0007747	-2.0518	-0.00093825	-0.35766	-0.00016355	457.27582509532147	30.278	0.39545	27.568	27.458	27.853	-2.7097	-0.080235	-0.0020924	NaN	52.299	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6841.1	+		47086	15837	39044	39066							0.07949777651424483
QVKKLIQL	8	Unmodified	_QVKKLIQL_					0	0	0		tr|A0A553SLR5|A0A553SLR5_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21175PE=4SV=1	tr|A0A553SLR5|A0A553SLR5_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21175PE=4SV=1	tr|A0A553SLR5|A0A553SLR5_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21175PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.27447509765625	2	485.326402	968.638252	-0.042938	-2.0839E-05	-0.80827	-0.00039228	-0.85121	-0.00041311	485.3259161381556	78.922	0.37869	76.171	75.991	76.37	-2.7514					12	7	2	0	0	0	0.028476	1	6359	6359		38.806	0	1	23342			47087	33755	39045	39067	50540	50540					0.15267800616322802
QVKKLIQL	8	Unmodified	_QVKKLIQL_					0	0	0		tr|A0A553SLR5|A0A553SLR5_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21175PE=4SV=1	tr|A0A553SLR5|A0A553SLR5_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21175PE=4SV=1	tr|A0A553SLR5|A0A553SLR5_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21175PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	485.326402	968.638252	-0.25326	-0.00012292	-0.40666	-0.00019736	-0.65993	-0.00032028	485.32613210996465	77.663	0.62892	75.874	75.675	76.304	-1.7894	-0.041781	-6.5058E-05	NaN	38.806	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24323			47088	33755	39045	39067							0.15267800616322802
QVKKLIQL	8	Unmodified	_QVKKLIQL_					0	0	0		tr|A0A553SLR5|A0A553SLR5_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21175PE=4SV=1	tr|A0A553SLR5|A0A553SLR5_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21175PE=4SV=1	tr|A0A553SLR5|A0A553SLR5_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21175PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	485.326402	968.638252	-0.96988	-0.00047071	-0.038726	-1.8795E-05	-1.0086	-0.0004895	485.3261766583329	78.055	0.60098	75.702	75.497	76.098	-2.3527	-0.21319	0.00029208	NaN	38.806	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37141			47089	33755	39045	39067							0.15267800616322802
QVKKNQRIS	9	Unmodified	_QVKKNQRIS_					0	0	0		ENSG00000249931|ENST00000512626|GOLGA8K;ENSG00000261247|ENST00000569052|GOLGA8T;ENSG00000261794|ENST00000566740|GOLGA8H	ENSG00000249931|ENST00000512626|GOLGA8K	ENSG00000249931|ENST00000512626|GOLGA8K	MULTI-MSMS	OvCa9_classI_Rep2	2	550.832275390625	2	550.830372	1099.64619	0.7561	0.00041648	2.8034	0.0015442	3.5595	0.0019607	550.831810295029	31.273	0.88647	28.563	28.347	29.233	-2.7097					37	17	3	0	0	0	0.21231	1	928	928		74.255	2.3776	1	181500			47090	9414	39046	39068	50541	50541					0.10035327865784893
QVKKTIENKL	10	Unmodified	_QVKKTIENKL_					0	0	0			REV__COPA|p.H613Tfs*3|1|0.05|ENSG00000122218|chr1:160298986-160298986|C/-|frameshift_variant	REV__COPA|p.H613Tfs*3|1|0.05|ENSG00000122218|chr1:160298986-160298986|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	400.9189453125	3	400.915201	1199.72377	5.3599	0.0021489	4.0857	0.001638	9.4455	0.0037869	400.916772389981	25.126	0.5375	22.416	22.29	22.828	-2.7097					20	10	3	0	0	0	0.81208	1	229	229		17.468	0	1	60102	+		47091	16226	39047	39069	50542	50542					0.13189921011326078
QVKLFNIN	8	Unmodified	_QVKLFNIN_					0	0	0			REV__ENSG00000165458|ENST00000298229|INPPL1	REV__ENSG00000165458|ENST00000298229|INPPL1	MULTI-MSMS	OvCa99_classI_Rep5	1	488.287109375	2	488.284734	974.554916	1.9506	0.00095245	-0.5875	-0.00028687	1.3631	0.00066558	488.28424627836347	83.951	0.6312	83.951	83.714	84.345	0					28	14	4	0	0	0	0.2826	1	8762	8762		110.34	0	1	772800	+		47092	21089	39048	39070	50543	50543					0.0666206416847217
QVKRKKVP	8	Unmodified	_QVKRKKVP_					0	0	0			REV__ENSG00000188981|ENST00000438480|MSANTD1	REV__ENSG00000188981|ENST00000438480|MSANTD1	MULTI-MSMS	OvCa99_classI_Rep5	1	491.8288269042969	2	491.829643	981.644734	-0.53048	-0.00026091	0.57859	0.00028457	0.048109	2.3662E-05	491.8297291019526	23.861	0.28951	23.861	23.697	23.987	0					9	5	2	0	0	0	0.73626	1	384	384		33.516	3.0119	1	46866	+		47093	22751	39049	39071	50544	50544					0.1531773856769405
QVKSHQLVK	9	Unmodified	_QVKSHQLVK_					0	0	0		ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	ENSG00000185958|ENST00000327337|FAM186A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.3211669921875	2	533.822015	1065.62948	-1.8967	-0.0010125	2.0018	0.0010686	0.1051	5.6107E-05	533.8225942875555	54.275	0.76817	51.027	50.774	51.542	-3.2474					18	14	2	0	0	0	0.027455	1	3409	3409		51.335	0	1	26807			47094	8305	39050	39072	50545	50545					0.09928826979853511
QVKYKLSLLNT	11	Unmodified	_QVKYKLSLLNT_					0	0	0			REV__tr|A0A553SGV2|A0A553SGV2_NIACIUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligaseOS=NialliacirculansOX=1397GN=murFPE=3SV=1	REV__tr|A0A553SGV2|A0A553SGV2_NIACIUDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanineligaseOS=NialliacirculansOX=1397GN=murFPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	436.261962890625	3	436.262489	1305.76564	1.694	0.00073904	-4.1194	-0.0017972	-2.4254	-0.0010581	436.26077678089143	64.483	2.8395	61.49	61.14	63.98	-2.9933					174	55	5	0	0	0	0.70587	1	2637	2637		27.644	4.266	1	3808000	+		47095	29742	39051	39073	50546	50546					0.1249847669985229
QVLAAAYELQ	10	Unmodified	_QVLAAAYELQ_					0	0	0		SPTBN2|p.R1805Qfs*108|1|0.25|ENSG00000173898|chr11:66691414-66691435|TGGCGTGCCCCGTGCAGGAAGC/-|frameshift_variant;SPTBN2|p.A1813Pfs*107|1|0.29|ENSG00000173898|chr11:66691412-66691412|C/-|frameshift_variant;SPTBN2|p.A2190Pfs*127|1|0.23|ENSG00000173898|chr11:66687581-66687581|C/-|frameshift_variant;nc|ENSG00000173898|O15020-2|SPTBN2;ENSG00000173898|ENST00000533211|SPTBN2	SPTBN2|p.R1805Qfs*108|1|0.25|ENSG00000173898|chr11:66691414-66691435|TGGCGTGCCCCGTGCAGGAAGC/-|frameshift_variant	SPTBN2|p.R1805Qfs*108|1|0.25|ENSG00000173898|chr11:66691414-66691435|TGGCGTGCCCCGTGCAGGAAGC/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.31884765625	2	553.298039	1104.58152	1.9029	0.0010529	1.6157	0.00089398	3.5186	0.0019468	553.2988772061718	112.77	0.49435	112.77	112.57	113.06	0					19	10	2	0	0	0	0.02676	1	12871	12871		49.536	5.1589	1	714150			47096	7425	39052	39074	50547	50547					0.03341708269135779
QVLDQPAVL	9	Unmodified	_QVLDQPAVL_					0	0	0			REV__ENST00000608825.1_3_7:99954396-99956429:+|nuORF	REV__ENST00000608825.1_3_7:99954396-99956429:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	491.7828674316406	2	491.782025	981.549496	1.5031	0.00073919	-1.8634	-0.00091637	-0.36029	-0.00017719	491.78083223671564	86.065	2.4404	83.419	82.993	85.434	-2.6463					136	48	5	0	0	0	0.35444	1	7257	7257		56.721	1.2168	1	1191800	+		47097	25975	39053	39075	50548	50548					0.057983405859772574
QVLFSPLLD	9	Unmodified	_QVLFSPLLD_					0	0	0			REV__ENST00000423777.6_1_19:50436657-50436897:+|nuORF	REV__ENST00000423777.6_1_19:50436657-50436897:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.8082275390625	2	516.292225	1030.5699	1.7523	0.00090471	-3.6067	-0.0018621	-1.8544	-0.00095742	516.2903586520055	90.604	0.88579	90.604	89.891	90.777	0					37	21	3	0	0	0	0.027462	1	9670	9670		44.117	0	1	2736000	+		47098	25635	39054	39076	50549	50549					0.05583511245822592
QVLHKKKI	8	Unmodified	_QVLHKKKI_					0	0	0			REV__ENSG00000122033|ENST00000381120|MTIF3	REV__ENSG00000122033|ENST00000381120|MTIF3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.7620544433594	2	497.332019	992.649485	-0.77408	-0.00038498	2.9582	0.0014712	2.1841	0.0010862	497.3328963878113	73.931	0.23324	70.7	70.628	70.861	-3.2308					5	4	2	0	0	0	0.028476	1	5767	5767		12.959	0	1	24347	+		47099	18574	39055	39077	50550	50550					0.15286622710459596
QVLHLWLQVL	10	Unmodified	_QVLHLWLQVL_					0	0	0		SGSM3|p.E672Q|1|0.76|ENSG00000100359|chr22:40409275-40409275|G/C|missense_variant	SGSM3|p.E672Q|1|0.76|ENSG00000100359|chr22:40409275-40409275|G/C|missense_variant	SGSM3|p.E672Q|1|0.76|ENSG00000100359|chr22:40409275-40409275|G/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	625.8209838867188	2	624.876791	1247.73903	-1.035	-0.00064674	1.8058	0.0011284	0.77086	0.0004817	624.8780061114585	104.57	0.50691	104.57	104.28	104.79	0					18	11	2	0	0	0	0.026849	1	11699	11699		25.574	0	1	316200			47100	32816	39056	39078	50551	50551					0.1250683259916059
QVLILHCDL	9	Unmodified	_QVLILHCDL_					0	0	0			REV__ENST00000256689.9_1_12:46753588-46753702:-|nuORF	REV__ENST00000256689.9_1_12:46753588-46753702:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	527.2922973632812	2	527.291702	1052.56885	2.3869	0.0012586	-2.9046	-0.0015316	-0.5177	-0.00027298	527.2899588675341	102.74	0.59107	102.74	102.42	103.01	0					21	12	3	0	0	0	0.50149	1	11460	11460		42.396	0	1	1614100	+		47101	23894	39057	39079	50552	50552					0.0446697360523558
QVLILKVF	8	Unmodified	_QVLILKVF_					0	0	0			REV__L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|371|3|anti-sense	REV__L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|371|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	480.3178405761719	2	480.318046	958.621539	0.28938	0.000139	-0.33238	-0.00015965	-0.042999	-2.0653E-05	480.317700980333	131.71	1.0449	130.58	130.29	131.34	-1.1249					43	20	3	0	0	0	0.73288	1	10512	10512		35.201	0	1	66984	+		47102	28564	39058	39080	50553	50553					0.14057299730370687
QVLILKVF	8	Unmodified	_QVLILKVF_					0	0	0			REV__L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|371|3|anti-sense	REV__L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|371|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.3169860839844	2	480.318046	958.621539	4.0104	0.0019263	-4.1147	-0.0019764	-0.10425	-5.0071E-05	480.3158855709112	132.07	1.2133	130.57	130.27	131.48	-1.5014					57	23	4	0	0	0	0.74229	1	12727	12727		30.504	0	1	95732	+		47103	28564	39058	39080	50554	50554					0.14057299730370687
QVLIPPAS	8	Unmodified	_QVLIPPAS_					0	0	0			REV__ENST00000348035.8_1_7:6442202-6442400:+|nuORF	REV__ENST00000348035.8_1_7:6442202-6442400:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	412.7461853027344	2	412.747453	823.480354	0.75275	0.0003107	-3.7611	-0.0015524	-3.0083	-0.0012417	412.74581316945023	134.99	1.618	134.76	134.29	135.91	-0.22696					65	32	3	0	0	0	0.75241	1	13404	13404		25.45	4.9683	1	284470	+		47104	24703	39059	39081	50555	50555					0.06155301357080134
QVLKKIAQK	9	Unmodified	_QVLKKIAQK_					0	0	0		ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	ENSG00000100292|ENST00000216117|HMOX1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.3076171875	2	528.350409	1054.68626	2.4549	0.001297	0.45297	0.00023933	2.9079	0.0015364	528.3505637347324	75.447	0.11352	75.447	75.369	75.482	0					4	2	2	0	0	0	0.027462	1	7513	7513		29.15	0	1	199140			47105	2041	39060	39082	50556	50556					0.16110874536366282
QVLKLTHLP	9	Unmodified	_QVLKLTHLP_					0	0	0		nc|ENSG00000184979|Q9UMW8-2|USP18;ENSG00000184979|ENST00000215794|USP18	nc|ENSG00000184979|Q9UMW8-2|USP18	nc|ENSG00000184979|Q9UMW8-2|USP18	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.8195190429688	2	524.829309	1047.64407	-1.3473	-0.00070708	1.8602	0.00097628	0.51292	0.0002692	524.8300445192907	93.819	0.66501	91.858	91.678	92.343	-1.9617					22	12	2	0	0	0	0.027462	1	6037	6037		40.778	11.629	1	26664			47106	8208	39061	39083	50557	50557					0.12214899127980061
QVLLDFMNP	9	Unmodified	_QVLLDFMNP_					0	0	0			REV__tr|A0A553SQC5|A0A553SQC5_NIACIPhosphonateABCtransporter,permeaseproteinPhnEOS=NialliacirculansOX=1397GN=phnEPE=3SV=1	REV__tr|A0A553SQC5|A0A553SQC5_NIACIPhosphonateABCtransporter,permeaseproteinPhnEOS=NialliacirculansOX=1397GN=phnEPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	539.3016357421875	2	538.775885	1075.53722	0.30894	0.00016645	-1.603	-0.00086365	-1.294	-0.0006972	538.77435298206	97.302	0.80439	95.543	95.157	95.962	-1.7595					25	15	2	0	0	0	0.027441	1	6409	6409		49.442	0	1	58176	+		47107	30623	39062	39084	50558	50558					0.002469808513069438
QVLLEDEEP	9	Unmodified	_QVLLEDEEP_					0	0	0		ENSG00000141867|ENST00000679869|BRD4	ENSG00000141867|ENST00000679869|BRD4	ENSG00000141867|ENST00000679869|BRD4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.8182373046875	2	536.263862	1070.51317	0.34047	0.00018258	1.7322	0.00092891	2.0727	0.0011115	536.2645122011651	67.47	0.79008	63.979	63.64	64.43	-3.4902					22	15	2	0	0	0	0.027462	1	5008	5008		37.159	0	1	31310			47108	4943	39063	39085	50559	50559					-0.019265811013838174
QVLLFIEF	8	Unmodified	_QVLLFIEF_					0	0	0			REV__tr|A0A553SU92|A0A553SU92_NIACIHTHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06490PE=4SV=1	REV__tr|A0A553SU92|A0A553SU92_NIACIHTHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06490PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.79083251953125	2	504.791861	1007.56917	-1.3667	-0.00068989	-3.0145	-0.0015217	-4.3811	-0.0022116	504.79021345345154	54.968	1.7279	51.721	51.439	53.167	-3.2474					87	33	4	0	0	0	0.62934	1	3460	3460		57.811	2.3071	1	1388400	+		47109	31052	39064	39086	50560	50560					0.06568716596746071
QVLLFYVE	8	Unmodified	_QVLLFYVE_					0	0	0			REV__nc|ENSG00000115896|Q15111-2|PLCL1	REV__nc|ENSG00000115896|Q15111-2|PLCL1	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.3486022949219	2	505.781493	1009.54843	-1.1179	-0.0005654	-1.2859	-0.00065037	-2.4037	-0.0012158	505.78093697949134	99.585	1.0924	98.754	98.169	99.261	-0.83051					33	21	2	0	0	0	0.028476	1	9075	9075		25.45	0	1	16326	+		47110	18275	39065	39087	50561	50561					0.04404126217082194
QVLLLRLP	8	Unmodified	_QVLLLRLP_					0	0	0		ENSG00000145740|ENST00000396591|SLC30A5;nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF	ENSG00000145740|ENST00000396591|SLC30A5	ENSG00000145740|ENST00000396591|SLC30A5	MULTI-MSMS	OvCa99_classI_Rep5	1	476.3213195800781	2	476.32112	950.627687	1.5222	0.00072507	0.48917	0.000233	2.0114	0.00095807	476.32117733445335	119.68	0.66666	119.68	119.38	120.05	0					36	16	3	0	0	0	0.50674	1	13724	13724		76.847	0	1	919620			47111	5242	39066	39088	50562	50562					0.15039817961883273
QVLPHAVQ	8	Unmodified	_QVLPHAVQ_					0	0	0			REV__nc|ENSG00000051009|Q8N612-3|FHIP1B	REV__nc|ENSG00000051009|Q8N612-3|FHIP1B	MULTI-SECPEP	OvCa9_classI_Rep2	2	446.2417297363281	2	446.255977	890.497401	1.7762	0.00079265	-1.8034	-0.00080477	-0.027173	-1.2126E-05	446.2550386752598	59.241	2.2038	56.461	55.235	57.438	-2.7801					66	42	3	0	0	0	0.028476	1	4170	4170		17.365	0	1	63171	+		47112	16686	39067	39089	50563	50563					0.04777221962888234
QVLQATPIP	9	Unmodified	_QVLQATPIP_					0	0	0			REV__ENST00000433579.1_1_7:42952135-42964395:-|nuORF	REV__ENST00000433579.1_1_7:42952135-42964395:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	483.9365539550781	2	483.784567	965.554582	0.59948	0.00029002	-1.2335	-0.00059676	-0.63404	-0.00030674	483.78330925724754	68.129	0.29935	65.283	65.13	65.43	-2.8459					6	5	2	0	0	0	0.027462	1	2925	2925		26.693	6.2111	1	4583.4	+		47113	17811	39068	39090	50564	50564					0.07042644448608826
QVLQNKKKL	9	Unmodified	_QVLQNKKKL_					0	0	0			REV__nc|ENSG00000116731|Q13029-2|PRDM2	REV__nc|ENSG00000116731|Q13029-2|PRDM2	MULTI-MSMS	OvCa99_classI_Rep5	1	549.8553466796875	2	549.853316	1097.69208	0.13516	7.4317E-05	-0.39325	-0.00021623	-0.25809	-0.00014191	549.8529565850394	63.08	0.63236	63.08	62.902	63.534	0					31	15	3	0	0	0	0.055688	1	5651	5651		115.46	11.402	1	1667700	+		47114	18317	39069	39091	50565	50565					0.14713973048037587
QVLQTSSDL	9	Unmodified	_QVLQTSSDL_					0	0	0		ENSG00000182348|ENST00000333190|ZNF804B	ENSG00000182348|ENST00000333190|ZNF804B	ENSG00000182348|ENST00000333190|ZNF804B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.77581787109375	2	495.758746	989.50294	-0.65998	-0.00032719	1.7343	0.00085981	1.0744	0.00053262	495.75904465270844	51.186	0.45049	48.013	47.872	48.323	-3.1734					13	8	2	0	0	0	0.027185	1	2973	2973		82.241	2.7895	1	21018			47115	7996	39070	39092	50566	50566					0.007768559640567219
QVLRRTLRVP	10	Unmodified	_QVLRRTLRVP_					0	0	0		chr9:89311351-89312490|87|160.69|0.37|8.76|+|0|CKS2,None|1;ENST00000314355.6_1_9:91926125-91930123:+|nuORF	chr9:89311351-89312490|87|160.69|0.37|8.76|+|0|CKS2,None|1	chr9:89311351-89312490|87|160.69|0.37|8.76|+|0|CKS2,None|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.4005126953125	2	619.396213	1236.77787	1.3389	0.00082929	2.1635	0.0013401	3.5024	0.0021694	619.3974253433613	85.487	0.78294	82.84	82.561	83.344	-2.6463					45	15	4	0	0	0	0.69073	1	7197	7197		31.53	0.96095	1	443500			47116	557	39071	39093	50567	50567					0.1689555795353499
QVLSGIQWFGR	11	Unmodified	_QVLSGIQWFGR_					0	0	0		nc|ENSG00000005844|P20701-3|ITGAL;ENSG00000005844|ENST00000356798|ITGAL;nc|ENSG00000005844|P20701-2|ITGAL	nc|ENSG00000005844|P20701-3|ITGAL	nc|ENSG00000005844|P20701-3|ITGAL	MULTI-SECPEP	OvCa9_classI_Rep2	2	430.7583312988281	3	430.903295	1289.68806	-0.31624	-0.00013627	-4.0643	-0.0017513	-4.3805	-0.0018876	430.9015792878296	70.253	1.0157	67.683	67.462	68.478	-2.5707					40	19	3	0	0	0	0.025772	1	5686	5686		33.039	18.953	1	24541			47117	861	39072	39094	50568	50568					0.05479883554312437
QVLSKLTFL	9	Unmodified	_QVLSKLTFL_					0	0	0		ENSG00000091106|ENST00000402280|NLRC4;nc|ENSG00000091106|Q9NPP4-2|NLRC4	ENSG00000091106|ENST00000402280|NLRC4	ENSG00000091106|ENST00000402280|NLRC4	MULTI-SECPEP	OvCa9_classI_Rep3	3	524.7942504882812	2	524.823692	1047.63283	-1.4273	-0.00074909	0.40929	0.0002148	-1.018	-0.00053429	524.8236530324428	91.684	0.84838	89.66	89.332	90.18	-2.0241					35	16	3	0	0	0	0.027418	1	5750	5750		65.465	7.2355	1	102500			47118	1861	39073	39095	50569	50569					0.11092077033845271
QVLSYYGSL	9	Unmodified	_QVLSYYGSL_					0	0	0		ENST00000234668.6_1_1:85647735-85666124:-|nuORF;nc|ENSG00000097096|Q5VT97-2|SYDE2	ENST00000234668.6_1_1:85647735-85666124:-|nuORF	ENST00000234668.6_1_1:85647735-85666124:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.8003540039062	2	515.266207	1028.51786	-0.038973	-2.0082E-05	-3.1099	-0.0016024	-3.1488	-0.0016225	515.2646886034586	88.142	1.4774	86.011	85.082	86.559	-2.1309					48	28	3	0	0	0	0.027441	1	5347	5347		49.442	0	1	100050			47119	9738	39074	39096	50570	50570					0.004743478320506256
QVLTKALV	8	Unmodified	_QVLTKALV_					0	0	0			REV__ENSG00000198286|ENST00000396946|CARD11	REV__ENSG00000198286|ENST00000396946|CARD11	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.2852478027344	2	436.284203	870.553853	0.44403	0.00019372	-0.47159	-0.00020575	-0.027566	-1.2027E-05	436.28386237162107	90.489	1.5789	87.914	87.6	89.179	-2.575					62	30	3	0	0	0	0.65062	1	7804	7804		53.351	0	1	269400	+		47120	23007	39075	39097	50571	50571					0.11339849799549029
QVLTKALV	8	Unmodified	_QVLTKALV_					0	0	0			REV__ENSG00000198286|ENST00000396946|CARD11	REV__ENSG00000198286|ENST00000396946|CARD11	MULTI-MATCH	OvCa9_classI_Rep2	2		2	436.284203	870.553853	2.2443	0.00097914	-2.0773	-0.00090627	0.16702	7.287E-05	436.2831912176663	89.171	1.6818	87.804	87.428	89.11	-1.3676	-0.04336	-0.0011101	NaN	53.351	67	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202380	+		47121	23007	39075	39097							0.11339849799549029
QVLTKALV	8	Unmodified	_QVLTKALV_					0	0	0			REV__ENSG00000198286|ENST00000396946|CARD11	REV__ENSG00000198286|ENST00000396946|CARD11	MULTI-MATCH	OvCa9_classI_Rep3	3		2	436.284203	870.553853	-0.14519	-6.3343E-05	0.1346	5.8725E-05	-0.010583	-4.6173E-06	436.2841094824928	89.905	1.6851	87.824	87.288	88.973	-2.0805	-0.023053	0.00081986	NaN	53.351	71	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	340460	+		47122	23007	39075	39097							0.11339849799549029
QVLVIDELGR	10	Unmodified	_QVLVIDELGR_					0	0	0			REV__ENSG00000185453|ENST00000614654|ZSWIM9	REV__ENSG00000185453|ENST00000614654|ZSWIM9	MULTI-SECPEP	OvCa9_classI_Rep2	2	572.2960205078125	2	571.332413	1140.65027	-1.0385	-0.00059333	0.5948	0.00033983	-0.44371	-0.0002535	571.3325770135204	105.61	1.2974	105.18	104.8	106.1	-0.43642					52	25	4	0	0	0	0.026624	1	9823	9823		38.754	7.2238	1	200760	+		47123	22504	39076	39098	50572	50572					0.08557372568861865
QVLVLVLVAW	10	Unmodified	_QVLVLVLVAW_					0	0	0			REV__ENSG00000168350|ENST00000305631|DEGS2	REV__ENSG00000168350|ENST00000305631|DEGS2	MULTI-MSMS	OvCa9_classI_Rep2	2	570.358154296875	2	570.362985	1138.71142	-4.2157	-0.0024045	-3.0066	-0.0017149	-7.2223	-0.0041193	570.3611382746453	152.47	1.2391	152.25	151.83	153.07	-0.22697					66	25	4	0	0	0	0.85907	1	15526	15526		11.511	1.2458	1	86072	+		47124	21366	39077	39099	50573	50573					0.1476092933894506
QVMIRCGEDI	10	Unmodified	_QVMIRCGEDI_					0	0	0		ENST00000532927.5_1_11:33792293-33792368:-|nuORF	ENST00000532927.5_1_11:33792293-33792368:-|nuORF	ENST00000532927.5_1_11:33792293-33792368:-|nuORF	MSMS	OvCa99_classI_Rep5	1	582.2824096679688	2	582.281008	1162.54746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.552	1	77.552	77.052	78.052	0								0	0	0	0.13503	1	7825	7825		54.776	1.8396	1				47125	13329	39078	39100	50574	50574					-0.027307794857733825
QVMIRCGEDI	10	Unmodified	_QVMIRCGEDI_					0	0	0		ENST00000532927.5_1_11:33792293-33792368:-|nuORF	ENST00000532927.5_1_11:33792293-33792368:-|nuORF	ENST00000532927.5_1_11:33792293-33792368:-|nuORF	MSMS	OvCa99_classI_Rep5	1	582.2816162109375	2	582.281008	1162.54746	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.727	1	77.727	77.227	78.227	0								0	0	0	0.15649	1	7850	7850		45.972	0	1				47126	13329	39078	39100	50575	50575					-0.027307794857733825
QVMIVLAAMP	10	Unmodified	_QVMIVLAAMP_					0	0	0		tr|A0A553SM10|A0A553SM10_NIACIAECfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_21695PE=3SV=1	tr|A0A553SM10|A0A553SM10_NIACIAECfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_21695PE=3SV=1	tr|A0A553SM10|A0A553SM10_NIACIAECfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_21695PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.2723999023438	2	536.798306	1071.58206	3.5291	0.0018944	-2.3863	-0.001281	1.1428	0.00061343	536.7969807449832	88.479	0.83924	88.479	88.044	88.883	0					48	19	6	0	0	0	0.026697	1	9385	9385		37.159	15.457	1	4148100			47127	33782	39079	39101	50576	50576					0.0491308839298199
QVMLAFLLS	9	Unmodified	_QVMLAFLLS_					0	0	0		tr|A0A553SUD8|A0A553SUD8_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06810PE=4SV=1	tr|A0A553SUD8|A0A553SUD8_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06810PE=4SV=1	tr|A0A553SUD8|A0A553SUD8_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06810PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.7666320800781	2	511.291171	1020.56779	0.91718	0.00046895	-2.4979	-0.0012771	-1.5807	-0.00080819	511.28928883316087	157.91	1.2715	157.91	157.1	158.37	0					39	25	3	0	0	0	0.027462	1	18501	18501		26.693	0	1	49990			47128	34598	39080	39102	50577	50577					0.05832759236352558
QVMLLRISK	9	Unmodified	_QVMLLRISK_					0	0	0		ENST00000308153.8_1_7:44875214-44880550:-|nuORF	ENST00000308153.8_1_7:44875214-44880550:-|nuORF	ENST00000308153.8_1_7:44875214-44880550:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.7638549804688	2	544.336444	1086.65834	-0.91693	-0.00049912	-0.096337	-5.244E-05	-1.0133	-0.00055156	544.3363971437842	37.228	0.32069	37.228	36.977	37.298	0					8	6	2	0	0	0	0.027462	1	2027	2027		39.253	0	1	47346			47129	10264	39081	39103	50578	50578					0.11847228284614175
QVMNLNVPM	9	Unmodified	_QVMNLNVPM_					0	0	0		ENSG00000237651|ENST00000432605|C2orf74	ENSG00000237651|ENST00000432605|C2orf74	ENSG00000237651|ENST00000432605|C2orf74	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.3386840820312	2	523.262087	1044.50962	-1.2626	-0.00066065	0.90564	0.00047389	-0.35692	-0.00018676	523.2623481366845	34.888	0.56814	34.888	34.725	35.293	0					19	11	2	0	0	0	0.027462	1	1766	1766		24.203	0	1	110500			47130	9319	39082	39104	50579	50579					-0.010852456805878319
QVNALKPLS	9	Unmodified	_QVNALKPLS_					0	0	0			REV__ENSG00000168092|ENST00000527958|PAFAH1B2	REV__ENSG00000168092|ENST00000527958|PAFAH1B2	MULTI-SECPEP	OvCa9_classI_Rep2	2	484.7735900878906	2	485.290017	968.565481	1.4426	0.00070008	-1.4471	-0.00070229	-0.0045468	-2.2065E-06	485.28915070484305	90.898	0.71618	89.662	89.291	90.007	-1.2355					28	13	3	0	0	0	0.027462	1	8086	8086		15.642	0	1	95047	+		47131	21346	39083	39105	50580	50580					0.07994046822898326
QVNKAGKL	8	Unmodified	_QVNKAGKL_					0	0	0			REV__tr|A0A553ST27|A0A553ST27_NIACIAlpha/betafoldhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_04080PE=4SV=1	REV__tr|A0A553ST27|A0A553ST27_NIACIAlpha/betafoldhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_04080PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	430.24127197265625	2	429.263802	856.513051	-0.7152	-0.00030701	0.69832	0.00029976	-0.016873	-7.2428E-06	429.2639352550678	37.148	0.41254	37.148	36.885	37.298	0					10	8	2	0	0	0	0.028476	1	2017	2017		25.45	1.2474	1	34721	+		47132	30908	39084	39106	50581	50581					0.07905508479939272
QVNKDNLLK	9	Unmodified	_QVNKDNLLK_					0	0	0		tr|A0A553SM31|A0A553SM31_NIACIThioredoxinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21800PE=4SV=1	tr|A0A553SM31|A0A553SM31_NIACIThioredoxinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21800PE=4SV=1	tr|A0A553SM31|A0A553SM31_NIACIThioredoxinfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_21800PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.34423828125	2	536.31148	1070.60841	2.2174	0.0011892	-0.3081	-0.00016524	1.9093	0.001024	536.311232798112	95.206	0.41882	95.206	94.992	95.41	0					22	9	4	0	0	0	0.027461	1	10396	10396		32.812	0	1	702690			47133	33792	39085	39107	50582	50582					0.07592816880310238
QVNLRLVASRS	11	Unmodified	_QVNLRLVASRS_					0	0	0		ENST00000534687.5_1_11:118209808-118209895:-|nuORF	ENST00000534687.5_1_11:118209808-118209895:-|nuORF	ENST00000534687.5_1_11:118209808-118209895:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	415.2133483886719	3	414.914083	1241.72042	-0.88534	-0.00036734	0.48937	0.00020305	-0.39597	-0.00016429	414.91356404249683	43.973	0.29442	40.966	40.793	41.088	-3.0074					6	5	2	0	0	0	0.026068	1	2132	2132		16.53	2.4438	1	9106.6			47134	13361	39086	39108	50583	50583					0.10922670957302216
QVNLTVKVI	9	Unmodified	_QVNLTVKVI_					0	0	0		nc|ENSG00000134571|Q14896-2|MYBPC3;ENSG00000134571|ENST00000545968|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.7483825683594	2	507.321317	1012.62808	-0.30918	-0.00015685	0.10397	5.2747E-05	-0.20521	-0.00010411	507.3209860291801	78.501	0.70229	76.761	76.249	76.951	-1.7398					20	13	2	0	0	0	0.027462	1	6520	6520		20.947	0.95016	1	61329			47135	4309	39087	39109	50584	50584					0.12227192891100458
QVNLTVKVI	9	Unmodified	_QVNLTVKVI_					0	0	0		nc|ENSG00000134571|Q14896-2|MYBPC3;ENSG00000134571|ENST00000545968|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	nc|ENSG00000134571|Q14896-2|MYBPC3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	507.321317	1012.62808	-0.5876	-0.0002981	0.16143	8.1899E-05	-0.42617	-0.0002162	507.3211547450738	78.798	0.78908	76.449	76.204	76.993	-2.3484	-0.15615	2.5487E-05	NaN	14.865	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121420			47136	4309	39087	39109							0.12227192891100458
QVNQFQKV	8	Unmodified	_QVNQFQKV_					0	0	0			REV__RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	REV__RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.7629089355469	2	495.771991	989.529429	0.048401	2.3996E-05	4.2736	0.0021188	4.3221	0.0021428	495.7743320031837	70.713	0.19688	70.713	70.603	70.8	0					7	4	2	0	0	0	0.028476	1	6802	6802		31.955	1.4512	1	120060	+		47137	21802	39088	39110	50585	50585					0.03424589646044751
QVPAKIPRA	9	Unmodified	_QVPAKIPRA_					0	0	0		ENST00000543133.5_1_22:18210886-18211162:+|nuORF	ENST00000543133.5_1_22:18210886-18211162:+|nuORF	ENST00000543133.5_1_22:18210886-18211162:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	490.33642578125	2	490.306001	978.597449	-1.4927	-0.00073187	0.91234	0.00044732	-0.58035	-0.00028455	490.3063728523868	136.62	0.34387	135.51	135.34	135.69	-1.1076					10	6	2	0	0	0	0.027462	1	11090	11090		34.173	7.3764	1	34720			47138	13487	39089	39111	50586	50586					0.1072945929670368
QVPLFNILA	9	Unmodified	_QVPLFNILA_					0	0	0		ENST00000459775.5_1_2:85848673-85875928:+|nuORF;nc|ENSG00000168883|Q53GS9-2|USP39;ENST00000493829.5_1_2:85843459-85872221:+|nuORF;nc|ENSG00000168883|Q53GS9-3|USP39;ENSG00000168883|ENST00000323701|USP39	ENST00000459775.5_1_2:85848673-85875928:+|nuORF	ENST00000459775.5_1_2:85848673-85875928:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.7893371582031	2	507.80276	1013.59097	-0.52871	-0.00026848	-3.2027	-0.0016264	-3.7314	-0.0018948	507.80071321357883	51.696	0.80392	48.522	48.224	49.028	-3.1734					23	15	2	0	0	0	0.027462	1	3039	3039		24.203	0	1	139640			47139	6949	39090	39112	50587	50587					0.08471521345313704
QVPLITHLI	9	Unmodified	_QVPLITHLI_					0	0	0		tr|A0A7D7A4R3|A0A7D7A4R3_9CLOTAccessorygeneregulatorBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04200PE=4SV=1	tr|A0A7D7A4R3|A0A7D7A4R3_9CLOTAccessorygeneregulatorBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04200PE=4SV=1	tr|A0A7D7A4R3|A0A7D7A4R3_9CLOTAccessorygeneregulatorBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04200PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.3163452148438	2	517.32386	1032.63317	2.1488	0.0011116	-1.6536	-0.00085542	0.49528	0.00025622	517.3228100415259	136.52	0.48637	134.98	134.65	135.13	-1.5437					14	9	2	0	0	0	0.027462	1	13258	13258		30.504	14.862	1	9459.9			47140	36152	39091	39113	50588	50588					0.11815496753729349
QVPMGRLTR	9	Unmodified	_QVPMGRLTR_					0	0	0		ENSG00000166428|ENST00000392593|PLD4	ENSG00000166428|ENST00000392593|PLD4	ENSG00000166428|ENST00000392593|PLD4	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.30029296875	2	529.300393	1056.58623	-2.3172	-0.0012265	-1.0504	-0.00055596	-3.3676	-0.0017825	529.2996062863574	48.92	1.2972	45.812	45.399	46.697	-3.1077					60	23	4	0	0	0	0.38529	1	2727	2727		53.351	2.016	1	315300			47141	6678	39092	39114	50589	50589					0.0602031393091238
QVPMGRLTR	9	Unmodified	_QVPMGRLTR_					0	0	0		ENSG00000166428|ENST00000392593|PLD4	ENSG00000166428|ENST00000392593|PLD4	ENSG00000166428|ENST00000392593|PLD4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	529.300393	1056.58623	-1.3607	-0.00072023	-2.28	-0.0012068	-3.6407	-0.001927	529.2989990257048	48.494	1.1435	45.733	45.428	46.572	-2.7603	-0.039468	-0.00082771	NaN	53.351	37	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82100			47142	6678	39092	39114							0.0602031393091238
QVPPRAVIN	9	Unmodified	_QVPPRAVIN_					0	0	0		ENSG00000136830|ENST00000373312|NIBAN2;nc|ENSG00000136830|Q96TA1-2|NIBAN2;ENST00000476091.1_1_9:130287163-130289496:-|nuORF	ENSG00000136830|ENST00000373312|NIBAN2	ENSG00000136830|ENST00000373312|NIBAN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.8045349121094	2	497.295633	992.576714	-0.81548	-0.00040553	0.56103	0.000279	-0.25445	-0.00012654	497.2957629024966	65.512	0.94925	65.512	65.034	65.984	0					57	23	3	0	0	0	0.027462	1	5947	5947		38.806	3.6054	1	1964000			47143	4521	39093	39115	50590	50590					0.08012868917035121
QVPQGDEFSL	10	Unmodified	_QVPQGDEFSL_					0	0	0			REV__ENST00000491400.5_1_6:35248907-35255958:+|nuORF	REV__ENST00000491400.5_1_6:35248907-35255958:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.82666015625	2	560.269478	1118.5244	0.75647	0.00042383	-0.032768	-1.8359E-05	0.7237	0.00040547	560.269453009217	116.9	1.4604	115.54	115.04	116.5	-1.3645					56	27	3	0	0	0	0.026931	1	11028	11028		30.318	0	1	75707	+		47144	16782	39094	39116	50591	50591					-0.03011759007222281
QVPQGDEFSL	10	Unmodified	_QVPQGDEFSL_					0	0	0			REV__ENST00000491400.5_1_6:35248907-35255958:+|nuORF	REV__ENST00000491400.5_1_6:35248907-35255958:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	560.269478	1118.5244	-1.066	-0.00059724	1.7291	0.00096877	0.66314	0.00037154	560.2704115143235	116.67	1.6329	115.63	115.05	116.68	-1.0414	0.070353	0.001265	NaN	23.523	54	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58193	+		47145	16782	39094	39116							-0.03011759007222281
QVPQNWPL	8	Unmodified	_QVPQNWPL_					0	0	0		HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|44|2|sense;chr7:150309900-150325841|313|17.65|0.29|5.94|+|0|TE_info:HERVH-int,HERVH-int_dup3022,ERV1,LTR,donor,+,150307704,150309900|None,ZBED10P|25	HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|44|2|sense	HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|44|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.20379638671875	2	491.261259	980.507966	2.037	0.0010007	0.30068	0.00014771	2.3376	0.0011484	491.2611073298312	91.494	0.70911	91.494	91.255	91.964	0					29	16	2	0	0	0	0.028476	1	9877	9877		40.573	0	1	912340			47146	525	39095	39117	50592	50592					0.01693204617322408
QVQEKATSL	9	Unmodified	_QVQEKATSL_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.7589111328125	2	502.274564	1002.53457	-0.91642	-0.00046029	-0.96829	-0.00048635	-1.8847	-0.00094664	502.27395381055203	69.661	1.0994	67.091	66.615	67.714	-2.5707					37	21	2	0	0	0	0.02744	1	5484	5484		52.937	3.4952	1	90763			47147	4634	39096	39118	50593	50593					0.033408487179940494
QVQHGHQGVGQ	11	Unmodified	_QVQHGHQGVGQ_					0	0	0		ENST00000271764.6_2_1:206784712-206785735:-|nuORF	ENST00000271764.6_2_1:206784712-206785735:-|nuORF	ENST00000271764.6_2_1:206784712-206785735:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.3107299804688	2	587.789235	1173.56392	2.4844	0.0014603	-3.7803	-0.002222	-1.296	-0.00076175	587.7883234953418	75.487	0.19363	75.487	75.407	75.601	0					7	4	2	0	0	0	0.025746	1	7520	7520		13.454	0	1	126720			47148	9994	39097	39119	50594	50594					-0.01592194213139919
QVQPLGAGRSL	11	Unmodified	_QVQPLGAGRSL_					0	0	0			REV__ENST00000560747.5_1_15:41625112-41625202:+|nuORF	REV__ENST00000560747.5_1_15:41625112-41625202:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	564.3241577148438	2	563.32238	1124.63021	-0.79883	-0.00045	4.3211	0.0024342	3.5223	0.0019842	563.3247303988362	101.88	1.3852	101.12	100.81	102.2	-0.764					47	27	2	0	0	0	0.02523	1	9341	9341		38.754	10.672	1	86612	+		47149	27624	39098	39120	50595	50595					0.07287621628893248
QVQPLGAGRSL	11	Unmodified	_QVQPLGAGRSL_					0	0	0			REV__ENST00000560747.5_1_15:41625112-41625202:+|nuORF	REV__ENST00000560747.5_1_15:41625112-41625202:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	563.32238	1124.63021	-0.49371	-0.00027812	3.9537	0.0022272	3.46	0.0019491	563.3245645536283	102.79	1.4671	101.27	101	102.46	-1.5211	0.047758	0.00026788	NaN	38.754	47	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120120	+		47150	27624	39098	39120							0.07287621628893248
QVQPLGAGRSL	11	Unmodified	_QVQPLGAGRSL_					0	0	0			REV__ENST00000560747.5_1_15:41625112-41625202:+|nuORF	REV__ENST00000560747.5_1_15:41625112-41625202:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	563.32238	1124.63021	0.95361	0.00053719	2.6382	0.0014862	3.5918	0.0020233	563.3238194713256	103.44	1.412	101.27	100.97	102.38	-2.1687	0.055041	-0.0012142	NaN	38.754	49	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104870	+		47151	27624	39098	39120							0.07287621628893248
QVQQASVKV	9	Unmodified	_QVQQASVKV_					0	0	0			REV__ENSG00000072080|ENST00000168148|SPP2	REV__ENSG00000072080|ENST00000168148|SPP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.768310546875	2	493.785099	985.555644	2.0784	0.0010263	0.064763	3.1979E-05	2.1432	0.0010583	493.78502512503246	90.526	0.75587	90.526	90.06	90.816	0					48	18	3	0	0	0	0.027462	1	9737	9737		31.53	8.4873	1	5823400	+		47152	16910	39099	39121	50596	50596					0.06228858817519267
QVQQKVLGII	10	Unmodified	_QVQQKVLGII_					0	0	0		nc|ENSG00000171634|Q12830|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830-4|BPTF	nc|ENSG00000171634|Q12830|BPTF	nc|ENSG00000171634|Q12830|BPTF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.8165893554688	2	563.353148	1124.69174	1.3086	0.00073722	-0.96269	-0.00054234	0.34593	0.00019488	563.3524906440862	61.961	1.2559	58.503	58.29	59.546	-3.4577					62	25	4	0	0	0	0.027204	1	4397	4397		17.365	1.7232	1	227340			47153	7221	39100	39122	50597	50597					0.13438553328182934
QVQQKVLGII	10	Unmodified	_QVQQKVLGII_					0	0	0		nc|ENSG00000171634|Q12830|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830-4|BPTF	nc|ENSG00000171634|Q12830|BPTF	nc|ENSG00000171634|Q12830|BPTF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	563.353148	1124.69174	-0.73406	-0.00041354	1.2866	0.00072481	0.55254	0.00031127	563.3537199600994	60.88	1.3567	58.109	57.819	59.176	-2.7702	-0.19681	0.0012099	NaN	11.511	58	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163030			47154	7221	39100	39122							0.13438553328182934
QVQVALAH	8	Unmodified	_QVQVALAH_					0	0	0			REV__ENST00000475911.2_1_1:159846344-159850487:-|nuORF	REV__ENST00000475911.2_1_1:159846344-159850487:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	432.5956115722656	2	433.248152	864.481751	0.55076	0.00023862	-0.42413	-0.00018375	0.12664	5.4865E-05	433.2478831666542	58.461	1.3061	55.069	54.498	55.805	-3.392					49	25	3	0	0	0	0.028476	1	3935	3935		21.702	0	1	104070	+		47155	23256	39101	39123	50598	50598					0.04408935445826501
QVQVFRQGR	9	Unmodified	_QVQVFRQGR_					0	0	0		FCGBP|p.A1781Dfs*19|1|0.1|ENSG00000275395|chr19:39894419-39894419|G/-|frameshift_variant;FCGBP|p.R3654Pfs*65|1|0.08|ENSG00000275395|chr19:39873438-39873438|C/-|frameshift_variant;ENSG00000275395|ENST00000616721|FCGBP;nc|ENSG00000275395|Q9Y6R7|FCGBP	FCGBP|p.A1781Dfs*19|1|0.1|ENSG00000275395|chr19:39894419-39894419|G/-|frameshift_variant	FCGBP|p.A1781Dfs*19|1|0.1|ENSG00000275395|chr19:39894419-39894419|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	558.350341796875	2	559.314889	1116.61522	0.92936	0.00051981	0.50896	0.00028467	1.4383	0.00080448	559.3148219759139	81.875	0.78038	80.226	79.919	80.7	-1.6485					17	14	2	0	0	0	0.027462	1	7000	7000		37.159	4.3467	1	16662			47156	9570	39102	39124	50599	50599					0.06158174551569573
QVQVFRQGR	9	Unmodified	_QVQVFRQGR_					0	0	0		FCGBP|p.A1781Dfs*19|1|0.1|ENSG00000275395|chr19:39894419-39894419|G/-|frameshift_variant;FCGBP|p.R3654Pfs*65|1|0.08|ENSG00000275395|chr19:39873438-39873438|C/-|frameshift_variant;ENSG00000275395|ENST00000616721|FCGBP;nc|ENSG00000275395|Q9Y6R7|FCGBP	FCGBP|p.A1781Dfs*19|1|0.1|ENSG00000275395|chr19:39894419-39894419|G/-|frameshift_variant	FCGBP|p.A1781Dfs*19|1|0.1|ENSG00000275395|chr19:39894419-39894419|G/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	559.314889	1116.61522	-1.3207	-0.00073866	-1.1542	-0.00064554	-2.4748	-0.0013842	559.316138184422	82.603	0.59063	80.307	79.988	80.579	-2.2963	0.040361	-0.0010293	NaN	37.159	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19016			47157	9570	39102	39124							0.06158174551569573
QVREVPQEL	9	Unmodified	_QVREVPQEL_					0	0	0			REV__ENSG00000154358|ENST00000680850|OBSCN	REV__ENSG00000154358|ENST00000680850|OBSCN	MULTI-MSMS	OvCa9_classI_Rep3	3	549.3015747070312	2	549.301113	1096.58767	-0.36233	-0.00019903	3.7196	0.0020432	3.3573	0.0018442	549.3030294617095	131.39	0.83014	130.27	130.01	130.84	-1.1249					30	16	2	0	0	0	0.5811	1	10463	10463		34.173	0.65696	1	63952	+		47158	20380	39103	39125	50600	50600					0.04324226500671102
QVRGREEF	8	Unmodified	_QVRGREEF_					0	0	0			REV__tr|A0A553SNP0|A0A553SNP0_NIACIRibosomeprotectionproteinVmlROS=NialliacirculansOX=1397GN=vmlRPE=3SV=1	REV__tr|A0A553SNP0|A0A553SNP0_NIACIRibosomeprotectionproteinVmlROS=NialliacirculansOX=1397GN=vmlRPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.7640075683594	2	510.764697	1019.51484	-1.1759	-0.0006006	0.71757	0.00036651	-0.45832	-0.00023409	510.76498418991224	42.625	1.2582	39.644	39.41	40.668	-2.9804					60	23	3	0	0	0	0.68714	1	2015	2015		45.952	3.5558	1	688700	+		47159	30436	39104	39126	50601	50601					0.0058651749790215035
QVRHQLQQL	9	Unmodified	_QVRHQLQQL_					0	0	0			REV__nc|ENSG00000013573|Q96FC9-5|DDX11	REV__nc|ENSG00000013573|Q96FC9-5|DDX11	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.8139038085938	2	575.327996	1148.64144	-0.51479	-0.00029617	3.7235	0.0021423	3.2088	0.0018461	575.3300579451061	43.249	0.72504	43.249	42.926	43.651	0					36	16	4	0	0	0	0.027462	1	2863	2863		37.159	14.117	1	1042300	+		47160	16510	39105	39127	50602	50602					0.07306443723041411
QVRLAGAQ	8	Unmodified	_QVRLAGAQ_					0	0	0		ENST00000529635.5_1_11:67174176-67177222:+|nuORF;ENSG00000175463|ENST00000542590|TBC1D10C	ENST00000529635.5_1_11:67174176-67177222:+|nuORF	ENST00000529635.5_1_11:67174176-67177222:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	421.23162841796875	2	421.745776	841.477	-0.35309	-0.00014891	-1.6074	-0.00067791	-1.9605	-0.00082682	421.74593513772595	25.449	0.35089	25.449	25.292	25.643	0					8	6	2	0	0	0	0.028476	1	577	577		7.6903	0	1	11880			47161	7546	39106	39128	50603	50603					0.04992051303088374
QVRLAHPEA	9	Unmodified	_QVRLAHPEA_					0	0	0			REV__ENST00000321599.8_2_3:49765695-49770282:-|nuORF	REV__ENST00000321599.8_2_3:49765695-49770282:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.7640075683594	2	510.78289	1019.55123	-1.1254	-0.00057484	0.59863	0.00030577	-0.52678	-0.00026907	510.7830829725216	42.089	1.2362	39.108	38.696	39.933	-2.9804					49	23	3	0	0	0	0.027447	1	2015	2015		56.721	4.4219	1	129030	+		47162	24449	39107	39129	50604	50604					0.042233943946030195
QVRLPLGTL	9	Unmodified	_QVRLPLGTL_					0	0	0		ENSG00000101654|ENST00000383314|RNMT;nc|ENSG00000101654|O43148-2|RNMT	ENSG00000101654|ENST00000383314|RNMT	ENSG00000101654|ENST00000383314|RNMT	MULTI-MSMS	OvCa9_classI_Rep3	3	498.8129577636719	2	498.813659	995.612765	-0.10557	-5.2658E-05	-0.22118	-0.00011033	-0.32674	-0.00016298	498.8134286419306	107.86	2.1308	106.67	106.38	108.51	-1.1978					94	40	3	0	0	0	0.12365	2	7722	7722;7729		90.777	19.481	1	572750			47163	2193	39108	39130	50605;50606	50605					0.11478326093913438
QVRLPLGTL	9	Unmodified	_QVRLPLGTL_					0	0	0		ENSG00000101654|ENST00000383314|RNMT;nc|ENSG00000101654|O43148-2|RNMT	ENSG00000101654|ENST00000383314|RNMT	ENSG00000101654|ENST00000383314|RNMT	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.8134460449219	2	498.813659	995.612765	-1.804	-0.00089985	1.1667	0.00058198	-0.63725	-0.00031787	498.81412167064707	108.42	2.0013	106.69	106.42	108.42	-1.7256					88	38	3	0	0	0	0.12365	2	9969	9969;9982		90.777	17.451	1	538280			47164	2193	39108	39130	50607;50608	50607					0.11478326093913438
QVRLQKVVC	9	Unmodified	_QVRLQKVVC_					0	0	0		ENSG00000130775|ENST00000373921|THEMIS2;nc|ENSG00000130775|Q5TEJ8-4|THEMIS2;nc|ENSG00000130775|Q5TEJ8-2|THEMIS2;nc|ENSG00000130775|Q5TEJ8-6|THEMIS2;nc|ENSG00000130775|Q5TEJ8-3|THEMIS2;nc|ENSG00000130775|Q5TEJ8-5|THEMIS2	ENSG00000130775|ENST00000373921|THEMIS2	ENSG00000130775|ENST00000373921|THEMIS2	MULTI-MSMS	OvCa9_classI_Rep2	2	536.8174438476562	2	536.818418	1071.62228	-1.1053	-0.00059333	0.37043	0.00019886	-0.73484	-0.00039448	536.8184593215832	67.034	1.4822	64.373	64.099	65.581	-2.661					79	29	4	0	0	0	0.53957	2	5218	5218;5230		38.806	4.6336	1	1131500			47165	4014	39109	39131	50609;50610	50609					0.08933771107763278
QVRNAFRRRWL	11	Unmodified	_QVRNAFRRRWL_					0	0	0			REV__ENSG00000214140|ENST00000592014|PRCD	REV__ENSG00000214140|ENST00000592014|PRCD	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.2800598144531	3	501.291887	1500.85383	2.5952	0.001301	-1.9311	-0.00096804	0.66412	0.00033292	501.29060034350584	87.8	0.45891	87.8	87.671	88.13	0					14	10	2	0	0	0	0.026383	1	9338	9338		12.957	0	1	234490	+		47166	23285	39110	39132	50611	50611					0.12343954853690775
QVRREEKN	8	Unmodified	_QVRREEKN_					0	0	0			REV__ENSG00000253485|ENST00000518069|PCDHGA5	REV__ENSG00000253485|ENST00000518069|PCDHGA5	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.80615234375	2	529.788704	1057.56285	0.060626	3.2119E-05	-2.4408	-0.0012931	-2.3801	-0.001261	529.7876625848958	87.053	0.45729	85.622	85.334	85.791	-1.4311					7	5	2	0	0	0	0.028476	1	7579	7579		29.15	2.4566	1	39916	+		47167	23504	39111	39133	50612	50612					0.03637591417941621
QVRRVDDSSDE	11	Unmodified	_QVRRVDDSSDE_					0	0	0			REV__ENST00000555795.1_1_14:75988823-76013011:+|nuORF	REV__ENST00000555795.1_1_14:75988823-76013011:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	435.8737487792969	3	435.8725	1304.59567	0.55403	0.00024149	2.9699	0.0012945	3.5239	0.001536	435.87377768883005	110.5	1.4315	110.33	110.01	111.44	-0.17237					86	28	5	0	0	0	0.68391	1	10410	10410		35.178	2.1388	1	338350	+		47168	27548	39112	39134	50613	50613					-0.0444429104052233
QVRSAGAATVL	11	Unmodified	_QVRSAGAATVL_					0	0	0		ENST00000548782.1_1_12:100574458-100593468:-|nuORF	ENST00000548782.1_1_12:100574458-100593468:-|nuORF	ENST00000548782.1_1_12:100574458-100593468:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.32470703125	2	536.809105	1071.60366	0.07922	4.2526E-05	-0.75102	-0.00040315	-0.6718	-0.00036063	536.8087209266657	32.865	0.63499	32.865	32.7	33.335	0					22	12	3	0	0	0	0.025864	1	1501	1501		32.751	0	1	347310			47169	13564	39113	39135	50614	50614					0.0707193273754001
QVRSRSPKKR	10	Unmodified	_QVRSRSPKKR_					0	0	0		ZZZ3|p.N293Sfs*4|1|0.06|ENSG00000036549|chr1:77632478-77632479|-/GA|frameshift_variant;nc|ENSG00000036549|Q8IYH5-4|ZZZ3;nc|ENSG00000036549|Q8IYH5-2|ZZZ3;ENSG00000036549|ENST00000370801|ZZZ3	ZZZ3|p.N293Sfs*4|1|0.06|ENSG00000036549|chr1:77632478-77632479|-/GA|frameshift_variant	ZZZ3|p.N293Sfs*4|1|0.06|ENSG00000036549|chr1:77632478-77632479|-/GA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.5909729003906	3	414.589822	1240.74764	0.92323	0.00038276	2.4146	0.0010011	3.3378	0.0013838	414.5907458901833	32.76	2.0475	30.065	29.544	31.591	-2.6954					114	43	4	0	0	0	0.47131	1	843	843		58.246	25.496	1	215500			47170	1089	39114	39136	50615	50615					0.13689199288342024
QVRTMVGLG	9	Unmodified	_QVRTMVGLG_					0	0	0			REV__tr|A0A7D7A304|A0A7D7A304_9CLOTUridylatekinaseOS=ClostridiumintestinaleOX=36845GN=pyrHPE=3SV=1	REV__tr|A0A7D7A304|A0A7D7A304_9CLOTUridylatekinaseOS=ClostridiumintestinaleOX=36845GN=pyrHPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.7826232910156	2	480.768394	959.522236	-0.37902	-0.00018222	-0.69933	-0.00033621	-1.0783	-0.00051843	480.76693178167096	83.019	1.5763	81.42	81.27	82.846	-1.5989					44	31	2	0	0	0	0.027462	1	7267	7267		23.042	0	1	100700	+		47171	32562	39115	39137	50616	50616					0.040855337739799324
QVRYYKLD	8	Unmodified	_QVRYYKLD_					0	0	0			REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|260|1|anti-sense	REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|260|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.2766723632812	2	542.792924	1083.57129	1.882	0.0010216	-2.0351	-0.0011047	-0.1531	-8.3101E-05	543.2917549219768	117.48	0.1893	117.48	117.37	117.56	0					5	3	2	0	0	0	0.028476	1	13445	13445		25.45	0	1	45441	+		47172	28205	39116	39138	50617	50617					0.032851453345756454
QVRYYKLD	8	Unmodified	_QVRYYKLD_					0	0	0			REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|260|1|anti-sense	REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|260|1|anti-sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.792924	1083.57129	-1.6575	-0.00089968	4.2015	0.0022806	2.544	0.0013809	542.7928501688419	117.46	0.74223	117.33	116.82	117.56	-0.12869	-0.07201	0.0033001	NaN	25.45	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11799	+		47173	28205	39116	39138							0.032851453345756454
QVSFVHSIS	9	Unmodified	_QVSFVHSIS_					0	0	0		ENST00000489742.1_1_2:47397901-47403439:-|nuORF	ENST00000489742.1_1_2:47397901-47403439:-|nuORF	ENST00000489742.1_1_2:47397901-47403439:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.2294921875	2	502.263999	1002.51345	-0.57389	-0.00028824	4.3979	0.0022089	3.824	0.0019206	502.7694425630735	38.308	0.23355	38.308	38.114	38.348	0					8	4	3	0	0	0	0.027462	1	2153	2153		29.15	9.1528	1	13151			47174	12681	39117	39139	50618	50618					0.012288834091350509
QVSGTCHPLC	10	Unmodified	_QVSGTCHPLC_					0	0	0			REV__ENST00000553863.5_1_14:77771036-77772802:-|nuORF	REV__ENST00000553863.5_1_14:77771036-77772802:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.756591796875	2	522.733694	1043.45284	2.0438	0.0010684	2.0348	0.0010636	4.0786	0.002132	522.7339703800627	86.188	0.51968	86.188	86.033	86.553	0					19	12	2	0	0	0	0.026688	1	9114	9114		32.812	0	1	417270	+		47175	27521	39118	39140	50619	50619					-0.06715293237084552
QVSIALSSHW	10	Unmodified	_QVSIALSSHW_					0	0	0		ENSG00000133116|ENST00000380099|KL;nc|ENSG00000133116|Q9UEF7-2|KL	ENSG00000133116|ENST00000380099|KL	ENSG00000133116|ENST00000380099|KL	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.7514038085938	2	564.29583	1126.57711	3.4424	0.0019425	4.3237	0.0024398	7.7661	0.0043824	564.2980311557742	87.982	0.62946	87.982	87.712	88.342	0					18	14	2	0	0	0	0.026802	1	9374	9374		19.997	0	1	380390			47176	4205	39119	39141	50620	50620					0.018882438462242135
QVSIKEHADAI	11	Unmodified	_QVSIKEHADAI_					0	0	0			REV__ENSG00000120029|ENST00000370033|ARMH3	REV__ENSG00000120029|ENST00000370033|ARMH3	MULTI-MSMS	OvCa99_classI_Rep5	1	605.8245239257812	2	605.824952	1209.63535	2.2739	0.0013776	-2.0507	-0.0012424	0.22318	0.00013521	605.8235039031811	93.508	5.3726	93.508	93.179	98.552	0					187	126	3	0	0	0	0.43443	1	10154	10154		41.427	2.1738	1	1719700	+		47177	18481	39120	39142	50621	50621					0.0389188070084856
QVSKAVLILT	10	Unmodified	_QVSKAVLILT_					0	0	0			REV__nc|ENSG00000145715|P20936-2|RASA1	REV__nc|ENSG00000145715|P20936-2|RASA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.3413696289062	2	536.342249	1070.66995	2.5098	0.0013461	-2.5905	-0.0013894	-0.080662	-4.3262E-05	536.3407702142576	130.99	1.0366	129.51	129.21	130.24	-1.4779					43	21	3	0	0	0	0.65849	1	12589	12589		35.152	0	1	57751	+		47178	19978	39121	39143	50622	50622					0.1374374857962266
QVSKSTAVK	9	Unmodified	_QVSKSTAVK_					0	0	0			REV__GLYATL2|p.D126E|1|0.27|ENSG00000156689|chr11:58837113-58837113|A/T|missense_variant	REV__GLYATL2|p.D126E|1|0.27|ENSG00000156689|chr11:58837113-58837113|A/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.23834228515625	2	474.279649	946.544745	-0.48242	-0.0002288	0.77723	0.00036863	0.29481	0.00013982	474.27980666354216	43.372	0.93687	43.372	43.143	44.08	0					26	21	2	0	0	0	0.027462	1	2855	2855		19.104	6.1443	1	212850	+		47179	20492	39122	39144	50623	50623					0.06933456443221075
QVSNAFVRVV	10	Unmodified	_QVSNAFVRVV_					0	0	0		tr|A0A553SLF5|A0A553SLF5_NIACITerDfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20535PE=4SV=1	tr|A0A553SLF5|A0A553SLF5_NIACITerDfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20535PE=4SV=1	tr|A0A553SLF5|A0A553SLF5_NIACITerDfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20535PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	560.8060913085938	2	559.819473	1117.62439	0.18881	0.0001057	2.0072	0.0011237	2.196	0.0012294	559.8204268598696	92.55	2.1119	90.013	88.917	91.029	-2.5374					55	41	2	0	0	0	0.026849	1	8078	8078		40.778	7.9657	1	43742			47180	33718	39123	39145	50624	50624					0.07028523117219265
QVSNAFVRVV	10	Unmodified	_QVSNAFVRVV_					0	0	0		tr|A0A553SLF5|A0A553SLF5_NIACITerDfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20535PE=4SV=1	tr|A0A553SLF5|A0A553SLF5_NIACITerDfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20535PE=4SV=1	tr|A0A553SLF5|A0A553SLF5_NIACITerDfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20535PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	559.819473	1117.62439	1.8095	0.001013	1.0572	0.00059185	2.8668	0.0016049	559.8197742852053	91.046	0.67094	89.81	89.39	90.061	-1.2355	-0.10136	-0.00079147	NaN	37.812	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26506			47181	33718	39123	39145							0.07028523117219265
QVSNLNKTSK	10	Unmodified	_QVSNLNKTSK_					0	0	0		ENSG00000113971|ENST00000337331|NPHP3;ENST00000476742.1_1_3:132424565-132434018:-|nuORF;nc|ENSG00000113971|Q7Z494-3|NPHP3;nc|ENSG00000113971|Q7Z494-6|NPHP3	ENSG00000113971|ENST00000337331|NPHP3	ENSG00000113971|ENST00000337331|NPHP3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	560.8060913085938	2	559.811845	1117.60914	0.12649	7.0813E-05	-3.8907	-0.0021781	-3.7642	-0.0021072	559.8093504587764	92.519	0.81001	89.976	89.567	90.377	-2.5425					24	15	2	0	0	0	0.026714	1	8078	8078		42.864	3.6114	1	96556			47182	3005	39124	39146	50625	50625					0.05503611529366026
QVSNMPLAR	9	Unmodified	_QVSNMPLAR_					0	0	0			REV__ENST00000498417.5_1_22:38228707-38229954:-|nuORF	REV__ENST00000498417.5_1_22:38228707-38229954:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.31768798828125	2	508.271301	1014.52805	-0.3474	-0.00017657	0.79419	0.00040366	0.44679	0.00022709	508.77201184273383	56.218	1.8775	52.923	52.464	54.341	-3.2944					53	36	2	0	0	0	0.027453	1	3545	3545		64.207	12.872	1	215890	+		47183	26794	39125	39147	50626	50626					0.021366322856238185
QVSPRARFPV	10	Unmodified	_QVSPRARFPV_					0	0	0		nc|ENSG00000143970|Q76L83-2|ASXL2;ENSG00000143970|ENST00000435504|ASXL2	nc|ENSG00000143970|Q76L83-2|ASXL2	nc|ENSG00000143970|Q76L83-2|ASXL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.833740234375	2	578.832914	1155.65128	0.33163	0.00019196	3.0586	0.0017704	3.3902	0.0019624	579.3360516416591	141.27	0.95432	141.27	141.03	141.98	0					24	18	2	0	0	0	0.026915	1	16479	16479		27.882	0	1	34704			47184	5112	39126	39148	50627	50627					0.07967631728388369
QVSPRFYIF	9	Unmodified	_QVSPRFYIF_					0	0	0		ENST00000525032.1_1_11:105481676-105732994:+|nuORF	ENST00000525032.1_1_11:105481676-105732994:+|nuORF	ENST00000525032.1_1_11:105481676-105732994:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.799072265625	2	578.811116	1155.60768	1.3635	0.0007892	1.1819	0.00068407	2.5453	0.0014733	579.3147297341926	138.16	0.2886	138.16	137.97	138.26	0					9	5	2	0	0	0	0.027462	1	16117	16117		25.45	4.9683	1	27109			47185	13177	39127	39149	50628	50628					0.03610022231259791
QVSPVPQR	8	Unmodified	_QVSPVPQR_					0	0	0			REV__ENST00000295404.9_1_19:50200719-50213852:+|nuORF	REV__ENST00000295404.9_1_19:50200719-50213852:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.6007385253906	2	455.758884	909.503215	0.24451	0.00011144	-0.30437	-0.00013872	-0.059853	-2.7279E-05	455.75868699410654	31.832	0.79397	31.832	31.509	32.303	0					21	15	3	0	0	0	0.028476	1	1364	1364		35.618	11.416	1	83585	+		47186	21436	39128	39150	50629	50629					0.04484320474557535
QVSQRIVLLPV	11	Unmodified	_QVSQRIVLLPV_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|147|1|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|147|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	626.390869140625	2	626.392805	1250.77106	-5.6586	-0.0035445	-3.473	-0.0021755	-9.1316	-0.00572	626.8920656002647	163.54	1.1058	163.31	162.97	164.08	-0.22697					56	36	2	0	0	0	0.72466	1	16717	16717		19.997	5.1319	1	65883	+		47187	28189	39129	39151	50630	50630					0.15570200282309088
QVSSLITDL	9	Unmodified	_QVSSLITDL_					0	0	0		ENSG00000168014|ENST00000334126|C2CD3	ENSG00000168014|ENST00000334126|C2CD3	ENSG00000168014|ENST00000334126|C2CD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.2843017578125	2	488.27149	974.528426	1.4926	0.0007288	1.1717	0.00057211	2.6643	0.0013009	488.27177417627286	80.751	1.0539	80.751	80.234	81.288	0					53	24	3	0	0	0	0.027462	1	8322	8322		47.916	26.969	1	2034600			47188	6863	39130	39152	50631	50631					0.040143304864727725
QVSSLVLHI	9	Unmodified	_QVSSLVLHI_					0	0	0		ENST00000515800.6_1_5:86667940-86686697:+|nuORF;nc|ENSG00000145715|P20936-2|RASA1;nc|ENSG00000145715|P20936-4|RASA1;ENSG00000145715|ENST00000274376|RASA1	ENST00000515800.6_1_5:86667940-86686697:+|nuORF	ENST00000515800.6_1_5:86667940-86686697:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	498.30035400390625	2	498.297842	994.581131	-0.59275	-0.00029537	-0.43342	-0.00021597	-1.0262	-0.00051134	498.2974460375474	104.71	0.98816	104.71	104.28	105.27	0					44	22	3	0	0	0	0.13154	1	11749	11749		88.643	17.347	1	885470			47189	5239	39131	39153	50632	50632					0.08362333339937322
QVSVDKRL	8	Unmodified	_QVSVDKRL_					0	0	0		ENST00000540341.1_1_12:8787977-8789216:+|nuORF	ENST00000540341.1_1_12:8787977-8789216:+|nuORF	ENST00000540341.1_1_12:8787977-8789216:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.2727966308594	2	472.779816	943.545079	0.17216	8.1396E-05	1.977	0.00093469	2.1492	0.0010161	472.78050704760426	57.032	0.47791	57.032	56.875	57.353	0					16	10	2	0	0	0	0.028476	1	4759	4759		56.721	0	1	195120			47190	13451	39132	39154	50633	50633					0.07104876163089102
QVSVKPVPPG	10	Unmodified	_QVSVKPVPPG_					0	0	0			REV__ENST00000592962.5_1_19:36604659-36605276:-|nuORF	REV__ENST00000592962.5_1_19:36604659-36605276:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	504.29931640625	2	504.297842	1006.58113	2.2757	0.0011476	-0.30768	-0.00015516	1.968	0.00099248	504.2975773350699	100.54	1.7599	100.54	100.15	101.91	0					107	41	4	0	0	0	0.52439	1	11160	11160		51.193	5.2407	1	7361800	+		47191	27955	39133	39155	50634	50634					0.07810333339944009
QVSVKPVPPG	10	Unmodified	_QVSVKPVPPG_					0	0	0			REV__ENST00000592962.5_1_19:36604659-36605276:-|nuORF	REV__ENST00000592962.5_1_19:36604659-36605276:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	504.297842	1006.58113	-1.2771	-0.00064404	-6.863	-0.003461	-8.1401	-0.004105	504.2921935746755	101.85	0.31601	100.33	100.11	100.42	-1.5211	-0.10436	-0.0058904	NaN	51.193	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9647.4	+		47192	27955	39133	39155							0.07810333339944009
QVTAVMPVLN	10	Unmodified	_QVTAVMPVLN_					0	0	0			REV__sp|Q6SW59|PP65_HCMVM65kDaphosphoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL83PE=1SV=1	REV__sp|Q6SW59|PP65_HCMVM65kDaphosphoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL83PE=1SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.2964477539062	2	536.296985	1070.57942	2.1187	0.0011363	-2.8691	-0.0015387	-0.75042	-0.00040245	536.295277579715	122.1	1.0564	122.1	121.85	122.91	0					43	22	3	0	0	0	0.20836	1	14050	14050		93.143	15.826	1	789250	+		47193	29415	39134	39156	50635	50635					0.04694956259686478
QVTAVMPVLN	10	Unmodified	_QVTAVMPVLN_					0	0	0			REV__sp|Q6SW59|PP65_HCMVM65kDaphosphoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL83PE=1SV=1	REV__sp|Q6SW59|PP65_HCMVM65kDaphosphoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL83PE=1SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	536.296985	1070.57942	2.1187	0.0011363	-2.8691	-0.0015387	-0.75042	-0.00040245	536.295277579715	122.1	1.0564	122.1	121.85	122.91	0	0	0	NaN	93.143	43	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	789250	+		47194	29415	39134	39156							0.04694956259686478
QVTELHDVL	9	Unmodified	_QVTELHDVL_					0	0	0		ENSG00000203499|ENST00000527139|IQANK1	ENSG00000203499|ENST00000527139|IQANK1	ENSG00000203499|ENST00000527139|IQANK1	MULTI-MSMS	OvCa9_classI_Rep2	2	527.28173828125	2	527.282389	1052.55022	-1.0628	-0.00056039	0.78414	0.00041347	-0.27864	-0.00014692	527.2826541808121	56.719	1.6865	53.915	53.374	55.06	-2.804					115	33	5	0	0	0	0.38529	1	4002	4002		53.351	7.3995	1	682000			47195	8922	39135	39157	50636	50636					0.0260513523503505
QVTETIELL	9	Unmodified	_QVTETIELL_					0	0	0		tr|A0A553SMG4|A0A553SMG4_NIACIGlycosidehydrolasefamily105proteinOS=NialliacirculansOX=1397GN=CEQ21_22505PE=4SV=1	tr|A0A553SMG4|A0A553SMG4_NIACIGlycosidehydrolasefamily105proteinOS=NialliacirculansOX=1397GN=CEQ21_22505PE=4SV=1	tr|A0A553SMG4|A0A553SMG4_NIACIGlycosidehydrolasefamily105proteinOS=NialliacirculansOX=1397GN=CEQ21_22505PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.2904663085938	2	523.292422	1044.57029	-0.32968	-0.00017252	0.82087	0.00042955	0.49119	0.00025703	523.2926728380099	142.51	1.1112	141.07	140.73	141.84	-1.4427					47	21	3	0	0	0	0.37135	1	13951	13951		54.776	0	1	70578			47196	33829	39136	39158	50637	50637					0.04978886175013031
QVTFPIRVL	9	Unmodified	_QVTFPIRVL_					0	0	0		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-MSMS	OvCa9_classI_Rep3	3	536.8291015625	2	536.829309	1071.64407	2.6165	0.0014046	-2.588	-0.0013893	0.028493	1.5296E-05	536.8277272009648	124.55	1.6701	123.5	122.96	124.63	-1.0519					82	30	4	0	0	0	0.44568	1	9692	9692		47.657	7.5992	1	328410			47197	2585	39137	39159	50638	50638					0.11110899127993434
QVTGKRVVF	9	Unmodified	_QVTGKRVVF_					0	0	0			REV__tr|A0A553SJS9|A0A553SJS9_NIACIGlucose-1-phosphateadenylyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_17270PE=3SV=1	REV__tr|A0A553SJS9|A0A553SJS9_NIACIGlucose-1-phosphateadenylyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_17270PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3112182617188	2	517.311284	1032.60801	0.010128	5.2392E-06	-0.21635	-0.00011192	-0.20622	-0.00010668	517.3110169376656	31.938	1.2365	29.228	28.986	30.222	-2.7097					60	24	4	0	0	0	0.56889	1	1045	1045		35.618	1.4457	1	305470	+		47198	30040	39138	39160	50639	50639					0.09301441951129163
QVTLFNPNK	9	Unmodified	_QVTLFNPNK_					0	0	0		nc|ENSG00000047346|Q32MH5-3|ATOSA;ENSG00000047346|ENST00000619572|ATOSA	nc|ENSG00000047346|Q32MH5-3|ATOSA	nc|ENSG00000047346|Q32MH5-3|ATOSA	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.7442016601562	2	530.792924	1059.57129	-0.53713	-0.0002851	-2.8053	-0.001489	-3.3424	-0.0017741	530.7910436961107	41.529	0.78702	41.529	41.195	41.982	0					43	17	3	0	0	0	0.027462	1	2617	2617		30.318	10.321	1	1579800			47199	1142	39139	39161	50640	50640					0.04389145334539535
QVTLKRID	8	Unmodified	_QVTLKRID_					0	0	0			REV__ENST00000399799.2_1_18:18530581-18530659:-|nuORF	REV__ENST00000399799.2_1_18:18530581-18530659:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	486.79638671875	2	486.795466	971.57638	0.096516	4.6984E-05	-0.21733	-0.0001058	-0.12082	-5.8813E-05	486.79522569877196	52.804	0.9171	52.804	52.17	53.087	0					39	20	4	0	0	0	0.55617	1	4159	4159		71.877	6.4121	1	1453800	+		47200	25393	39140	39162	50641	50641					0.0894544919716509
QVTLLDPNE	9	Unmodified	_QVTLLDPNE_					0	0	0		ENST00000478009.1_1_1:202935608-202936333:-|nuORF;ENSG00000159348|ENST00000367249|CYB5R1	ENST00000478009.1_1_1:202935608-202936333:-|nuORF	ENST00000478009.1_1_1:202935608-202936333:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.2681274414062	2	514.766571	1027.51859	-0.60802	-0.00031299	0.49644	0.00025555	-0.11158	-5.7436E-05	514.7666756391001	55.483	0.942	55.483	55.193	56.135	0					45	22	4	0	0	0	0.027461	1	4603	4603		25.574	0	1	4368300			47201	6006	39141	39163	50642	50642					0.005931424811024044
QVTPLTIQV	9	Unmodified	_QVTPLTIQV_					0	0	0			REV__ENSG00000135842|ENST00000367511|NIBAN1	REV__ENSG00000135842|ENST00000367511|NIBAN1	MULTI-MSMS	OvCa9_classI_Rep2	2	499.7961120605469	2	499.797675	997.580796	1.2387	0.00061911	-4.4901	-0.0022442	-3.2514	-0.001625	499.7951854889041	28.84	1.0646	26.13	25.716	26.781	-2.7097					46	22	4	0	0	0	0.65371	1	652	652		25.574	0	1	100180	+		47202	19328	39142	39164	50643	50643					0.08190913620092033
QVTQKKLSSA	10	Unmodified	_QVTQKKLSSA_					0	0	0		ENST00000489330.6_1_X:11156985-11160533:-|nuORF;nc|ENSG00000047648|O43182-4|ARHGAP6;ENSG00000047648|ENST00000337414|ARHGAP6	ENST00000489330.6_1_X:11156985-11160533:-|nuORF	ENST00000489330.6_1_X:11156985-11160533:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.3177490234375	2	545.316763	1088.61897	-0.51373	-0.00028014	0.45215	0.00024656	-0.061581	-3.3581E-05	545.3169196404446	142.63	4.7541	141.19	139.73	144.49	-1.4427					172	91	2	0	0	0	0.74374	1	13999	13999		25.574	2.0514	1	155190			47203	1149	39143	39165	50644	50644					0.07820799534783873
QVTRGANIH	9	Unmodified	_QVTRGANIH_					0	0	0			REV__ENST00000533696.5_1_9:102677473-102691149:+|nuORF	REV__ENST00000533696.5_1_9:102677473-102691149:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.2618713378906	2	498.27269	994.530826	0.69401	0.0003458	0.098956	4.9307E-05	0.79296	0.00039511	498.2724761932117	141.94	0.44966	141.94	141.69	142.14	0					15	8	2	0	0	0	0.027462	1	16583	16583		45.972	15.469	1	77760	+		47204	19415	39144	39166	50645	50645					0.03334223734805164
QVTYQLKIP	9	Unmodified	_QVTYQLKIP_					0	0	0		ENST00000506888.5_1_6:88187111-88216600:+|nuORF;nc|ENSG00000164414|P78382-2|SLC35A1;ENSG00000164414|ENST00000369552|SLC35A1	ENST00000506888.5_1_6:88187111-88216600:+|nuORF	ENST00000506888.5_1_6:88187111-88216600:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3164672851562	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.63422	1	14361	14361		27.882	3.6795	1	202430			47205	6455	39145	39167	50646	50646					0.08222889028456848
QVVASMRYY	9	Unmodified	_QVVASMRYY_					0	0	0		tr|A0A7D6VTR7|A0A7D6VTR7_9CLOTRestrictionendonucleaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05405PE=4SV=1	tr|A0A7D6VTR7|A0A7D6VTR7_9CLOTRestrictionendonucleaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05405PE=4SV=1	tr|A0A7D6VTR7|A0A7D6VTR7_9CLOTRestrictionendonucleaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05405PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.3076171875	2	558.778959	1115.54336	2.292	0.0012807	0.20142	0.00011255	2.4934	0.0013933	558.778708377154	117.28	0.65746	117.28	117.04	117.7	0					33	13	4	0	0	0	0.027462	1	13475	13475		42.396	3.59	1	193180			47206	35135	39146	39168	50647	50647					-0.009785009171764614
QVVASMRYY	9	Unmodified	_QVVASMRYY_					0	0	0		tr|A0A7D6VTR7|A0A7D6VTR7_9CLOTRestrictionendonucleaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05405PE=4SV=1	tr|A0A7D6VTR7|A0A7D6VTR7_9CLOTRestrictionendonucleaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05405PE=4SV=1	tr|A0A7D6VTR7|A0A7D6VTR7_9CLOTRestrictionendonucleaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05405PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	558.778959	1115.54336	-0.272	-0.00015199	4.0623	0.0022699	3.7903	0.0021179	559.2842065505827	118.56	0.31558	117.21	117	117.31	-1.3444	-0.033969	0.0035272	NaN	42.396	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6653.3			47207	35135	39146	39168							-0.009785009171764614
QVVAYEPQK	9	Unmodified	_QVVAYEPQK_					0	0	0			REV__nc|ENSG00000091129|Q92823-2|NRCAM	REV__nc|ENSG00000091129|Q92823-2|NRCAM	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.8062744140625	2	531.284931	1060.55531	-1.8222	-0.00096808	3.2281	0.001715	1.4059	0.00074695	531.2867652865276	41.416	0.78017	38.436	38.231	39.011	-2.9804					22	14	2	0	0	0	0.027462	1	1880	1880		29.15	0	1	30442	+		47208	17242	39147	39169	50648	50648					0.02745439097657254
QVVDTVVKVF	10	Unmodified	_QVVDTVVKVF_					0	0	0		ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3300170898438	2	567.331882	1132.64921	-2.3399	-0.0013275	-1.3687	-0.0007765	-3.7086	-0.002104	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.74374	2	14495	14495;14530		25.574	4.6271	1	241060			47209	3275	39148	39170	50649;50650	50649					0.0881915819995811
QVVEVTKGIL	10	Unmodified	_QVVEVTKGIL_					0	0	0		nc|ENSG00000159374|Q8TC57-4|M1AP;chr2:74558874-74560151|392|13.59|0.42|5.03|-|ENST00000536235|M1AP,M1AP;ENSG00000159374|ENST00000421985|M1AP;nc|ENSG00000159374|Q8TC57-2|M1AP	nc|ENSG00000159374|Q8TC57-4|M1AP	nc|ENSG00000159374|Q8TC57-4|M1AP	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.3203735351562	2	543.331882	1084.64921	-0.15003	-8.1515E-05	4.0941	0.0022244	3.9441	0.0021429	543.8352922675572	60.597	0.16839	60.597	60.477	60.646	0					6	3	2	0	0	0	0.027363	1	5285	5285		107.01	11.192	1	85134			47210	447	39149	39171	50651	50651					0.11027158199954101
QVVFLGLLAG	10	Unmodified	_QVVFLGLLAG_					0	0	0		ENSG00000007384|ENST00000262316|RHBDF1	ENSG00000007384|ENST00000262316|RHBDF1	ENSG00000007384|ENST00000262316|RHBDF1	MULTI-SECPEP	OvCa9_classI_Rep3	3	509.80328369140625	2	508.810585	1015.60662	-1.2773	-0.00064989	1.0689	0.00054385	-0.20841	-0.00010604	508.81112771443026	136.06	0.64079	134.95	134.7	135.34	-1.1076					19	12	2	0	0	0	0.026669	1	11061	11061		38.806	4.6336	1	22384			47211	902	39150	39172	50652	50652					0.09943807862362064
QVVFLGLLAG	10	Unmodified	_QVVFLGLLAG_					0	0	0		ENSG00000007384|ENST00000262316|RHBDF1	ENSG00000007384|ENST00000262316|RHBDF1	ENSG00000007384|ENST00000262316|RHBDF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.8024597167969	2	508.810585	1015.60662	2.1577	0.0010979	-2.8725	-0.0014615	-0.71477	-0.00036368	508.8089937213819	136.4	0.67729	134.85	134.65	135.32	-1.5437					22	13	2	0	0	0	0.026768	1	13252	13252		31.955	0	1	30388			47212	902	39150	39172	50653	50653					0.09943807862362064
QVVGLTWGHI	10	Unmodified	_QVVGLTWGHI_					0	0	0		nc|ENSG00000181038|Q86XA0-2|METTL23;ENST00000589581.1_1_17:74725774-74729332:+|nuORF;ENSG00000181038|ENST00000341249|METTL23	nc|ENSG00000181038|Q86XA0-2|METTL23	nc|ENSG00000181038|Q86XA0-2|METTL23	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.8096313476562	2	555.308741	1108.60293	-0.31247	-0.00017352	3.7321	0.0020725	3.4196	0.0018989	555.3108399688462	55.451	0.65374	55.451	55.15	55.804	0					28	15	3	0	0	0	0.026871	1	4535	4535		29.15	1.2673	1	1563000			47213	7917	39151	39173	50654	50654					0.052971380884855535
QVVHLLYVA	9	Unmodified	_QVVHLLYVA_					0	0	0		ENST00000607058.1_1_8:24771141-24771990:-|nuORF	ENST00000607058.1_1_8:24771141-24771990:-|nuORF	ENST00000607058.1_1_8:24771141-24771990:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.2472534179688	2	521.30821	1040.60187	-1.6679	-0.0008695	0.70781	0.00036899	-0.96011	-0.00050051	521.3080757810213	69.965	0.29017	69.965	69.756	70.046	0					9	6	2	0	0	0	0.027462	1	6673	6673		26.796	8.4717	1	79048			47214	14282	39152	39174	50655	50655					0.08318923719616578
QVVKIPIIGV	10	Unmodified	_QVVKIPIIGV_					0	0	0		tr|A0A7D7A4K7|A0A7D7A4K7_9CLOTDihydroorotatedehydrogenaseB(NAD(+)),catalyticsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_02215PE=3SV=1	tr|A0A7D7A4K7|A0A7D7A4K7_9CLOTDihydroorotatedehydrogenaseB(NAD(+)),catalyticsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_02215PE=3SV=1	tr|A0A7D7A4K7|A0A7D7A4K7_9CLOTDihydroorotatedehydrogenaseB(NAD(+)),catalyticsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_02215PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.8045654296875	2	533.35516	1064.69577	-1.2996	-0.00069314	-0.12254	-6.5359E-05	-1.4221	-0.0007585	533.3550471646707	56.139	0.80826	52.845	52.464	53.272	-3.2944					24	15	2	0	0	0	0.026697	1	3607	3607		45.952	7.1458	1	72398			47215	36147	39153	39175	50656	50656					0.16600642821890688
QVVKKDSTKG	10	Unmodified	_QVVKKDSTKG_					0	0	0			REV__nc|ENSG00000051341|O75417-2|POLQ	REV__nc|ENSG00000051341|O75417-2|POLQ	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3173828125	2	545.316763	1088.61897	-1.7047	-0.0009296	1.3026	0.00071033	-0.40209	-0.00021926	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.75313	1	14441	14441		24.519	5.1592	1	202430	+		47216	16687	39154	39176	50657	50657					0.07820799534738399
QVVLDKNHRL	10	Unmodified	_QVVLDKNHRL_					0	0	0			REV__nc|ENSG00000291158|P0C866|LINC00869	REV__nc|ENSG00000291158|P0C866|LINC00869	MULTI-MSMS	OvCa9_classI_Rep2	2	611.3554077148438	2	611.356754	1220.69895	-3.7398	-0.0022864	2.6738	0.0016346	-1.0661	-0.00065175	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.762	1	15331	15331		23.523	0.94304	1	331570	+		47217	26035	39155	39177	50658	50658					0.09743285928584555
QVVLIKRTS	9	Unmodified	_QVVLIKRTS_					0	0	0			REV__ENSG00000170917|ENST00000304430|NUDT6	REV__ENSG00000170917|ENST00000304430|NUDT6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.80126953125	2	522.332216	1042.64988	-0.49454	-0.00025831	0.49773	0.00025998	0.0031958	1.6693E-06	522.3323236837855	22.089	0.65703	20.751	20.523	21.18	-1.3386					21	12	2	0	0	0	0.027455	1	237	237		60.972	6.1956	1	38144	+		47218	21575	39156	39178	50659	50659					0.13025997639647358
QVVLYQIATV	10	Unmodified	_QVVLYQIATV_					0	0	0			REV__tr|A0A553ST40|A0A553ST40_NIACILowtemperaturerequirementproteinAOS=NialliacirculansOX=1397GN=CEQ21_04330PE=4SV=1	REV__tr|A0A553ST40|A0A553ST40_NIACILowtemperaturerequirementproteinAOS=NialliacirculansOX=1397GN=CEQ21_04330PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3292846679688	2	567.331882	1132.64921	-3.474	-0.0019709	-0.21845	-0.00012393	-3.6925	-0.0020949	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.73378	1	12062	12062		26.693	4.1133	1	458690	+		47219	30914	39157	39179	50660	50660					0.08819158199935373
QVVPHFGTE	9	Unmodified	_QVVPHFGTE_					0	0	0			REV__AluSx_dup71151|chr11:64318596-64318908:-|1.0269991222580837|0.4573538105707593|1.17|429.0|22|3|anti-sense	REV__AluSx_dup71151|chr11:64318596-64318908:-|1.0269991222580837|0.4573538105707593|1.17|429.0|22|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.25390625	2	507.256174	1012.49779	-0.4516	-0.00022908	-1.623	-0.00082328	-2.0746	-0.0010524	507.7556367004883	55.254	0.63148	55.254	54.848	55.48	0					20	10	3	0	0	0	0.027462	1	4487	4487		35.618	12.576	1	399140	+		47220	15611	39158	39180	50661	50661					-0.007954031079179913
QVVQLQEW	8	Unmodified	_QVVQLQEW_					0	0	0		nc|ENSG00000129534|Q6P0N0-2|MIS18BP1;ENSG00000129534|ENST00000310806|MIS18BP1	nc|ENSG00000129534|Q6P0N0-2|MIS18BP1	nc|ENSG00000129534|Q6P0N0-2|MIS18BP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7947387695312	2	515.271824	1028.5291	-0.71177	-0.00036676	-1.6621	-0.00085643	-2.3739	-0.0012232	515.7725978620651	63.196	0.67495	59.721	59.529	60.204	-3.475					21	13	3	0	0	0	0.028476	1	4474	4474		21.96	1.013	1	55461			47221	3933	39159	39181	50662	50662					0.015971699261854155
QVVQVRKS	8	Unmodified	_QVVQVRKS_					0	0	0		ENST00000463722.5_1_7:99695745-99696843:-|nuORF	ENST00000463722.5_1_7:99695745-99696843:-|nuORF	ENST00000463722.5_1_7:99695745-99696843:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	472.2885437011719	2	472.287808	942.561064	2.8291	0.0013362	-2.6744	-0.0012631	0.15474	7.3084E-05	472.2863007833763	26.584	0.34097	23.874	23.706	24.047	-2.7097					11	8	2	0	0	0	0.75006	1	387	387		16.473	0	1	17129			47222	12233	39160	39182	50663	50663					0.0874858239999412
QVVRQAFMCP	10	Unmodified	_QVVRQAFMCP_					0	0	0			REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1;REV__nc|ENSG00000114841|Q9P2D7-3|DNAH1	REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	589.3367309570312	2	589.794086	1177.57362	-1.2129	-0.00071539	4.3658	0.0025749	3.1528	0.0018595	589.7962469567972	146.03	0.2583	144.59	144.44	144.7	-1.4357					7	4	2	0	0	0	0.027204	1	14335	14335		17.365	0	1	8091.5	+		47223	18203;26787	39161	39183	50664	50664					-0.00806465523623956
QVVSESPPPM	10	Unmodified	_QVVSESPPPM_					0	0	0			REV__CACNA1D|p.Q1955Pfs*19|1|0.09|ENSG00000157388|chr3:53808762-53808763|-/CTCCTCCTTCAGAGAGTGTTGTGCAG|frameshift_variant	REV__CACNA1D|p.Q1955Pfs*19|1|0.09|ENSG00000157388|chr3:53808762-53808763|-/CTCCTCCTTCAGAGAGTGTTGTGCAG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	535.7616577148438	2	535.762975	1069.5114	-0.90754	-0.00048622	0.58725	0.00031463	-0.32029	-0.0001716	535.7631866225162	78.426	1.9965	76.686	75.881	77.878	-1.7398					108	38	4	0	0	0	0.49558	1	6541	6541		54.776	1.4249	1	494290	+		47224	15727	39162	39184	50665	50665					-0.020579133909905067
QVVTLLKDL	9	Unmodified	_QVVTLLKDL_					0	0	0		tr|A0A553SRM2|A0A553SRM2_NIACIIron-containingalcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_01365PE=4SV=1	tr|A0A553SRM2|A0A553SRM2_NIACIIron-containingalcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_01365PE=4SV=1	tr|A0A553SRM2|A0A553SRM2_NIACIIron-containingalcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_01365PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.7747802734375	2	514.82115	1027.62775	0.33027	0.00017003	-0.74028	-0.00038111	-0.41001	-0.00021108	514.8207618797721	109.09	0.4725	107.89	107.61	108.09	-1.1978					13	8	2	0	0	0	0.027462	1	7820	7820		35.618	1.4457	1	21168			47225	34276	39163	39185	50666	50666					0.1150377317121638
QVVVSIPKGY	10	Unmodified	_QVVVSIPKGY_					0	0	0		tr|A0A7D6VRZ9|A0A7D6VRZ9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20970PE=4SV=1	tr|A0A7D6VRZ9|A0A7D6VRZ9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20970PE=4SV=1	tr|A0A7D6VRZ9|A0A7D6VRZ9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20970PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	545.317138671875	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.72142	1	14373	14373		28.081	2.5074	1	202430			47226	34970	39164	39186	50667	50667					0.08222889028479585
QVWFRIKV	8	Unmodified	_QVWFRIKV_					0	0	0			REV__ENST00000523377.1_1_6:90345453-90345576:-|nuORF	REV__ENST00000523377.1_1_6:90345453-90345576:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.32470703125	2	538.324194	1074.63383	2.3031	0.0012398	-1.5843	-0.00085288	0.71876	0.00038693	538.323125688521	120.7	0.7106	120.7	120.44	121.15	0					30	15	3	0	0	0	0.028476	1	13869	13869		31.955	0	1	218160	+		47227	27092	39165	39187	50668	50668					0.09950336193423936
QVWHVLVSV	9	Unmodified	_QVWHVLVSV_					0	0	0		ENST00000493851.5_1_3:39143979-39149053:-|nuORF	ENST00000493851.5_1_3:39143979-39149053:-|nuORF	ENST00000493851.5_1_3:39143979-39149053:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.276611328125	2	533.805834	1065.59712	1.5923	0.00084997	3.8793	0.0020708	5.4716	0.0029208	533.8065064471932	78.89	0.57208	78.89	78.668	79.24	0					32	13	4	0	0	0	0.027441	1	8003	8003		58.782	0	1	788490			47228	12743	39166	39188	50669	50669					0.06694039576859723
QVWIKEAK	8	Unmodified	_QVWIKEAK_					0	0	0		ENSG00000102362|ENST00000372989|SYTL4	ENSG00000102362|ENST00000372989|SYTL4	ENSG00000102362|ENST00000372989|SYTL4	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.7310791015625	2	501.292559	1000.57057	1.823	0.00091387	0.19361	9.7054E-05	2.0166	0.0010109	501.29256120189194	78.701	0.78596	78.701	78.374	79.16	0					32	18	2	0	0	0	0.028476	1	8014	8014		25.574	0	1	1902000			47229	2237	39167	39189	50670	50670					0.07030350685522535
QVWKQQWPLL	10	Unmodified	_QVWKQQWPLL_					0	0	0			REV__nc|ENSG00000186891|Q9Y5U5-2|TNFRSF18	REV__nc|ENSG00000186891|Q9Y5U5-2|TNFRSF18	MULTI-SECPEP	OvCa9_classI_Rep2	2	442.6016540527344	3	442.583674	1324.72919	0.39292	0.0001739	4.2764	0.0018927	4.6693	0.0020666	442.58503941174683	50.448	0.29838	47.653	47.43	47.729	-2.794					8	5	2	0	0	0	0.02706	1	3229	3229		30.318	5.1917	1	8303.9	+		47230	29057	39168	39190	50671	50671					0.07981644593814963
QVWKYKWVP	9	Unmodified	_QVWKYKWVP_					0	0	0			REV__tr|A0A7D6VR59|A0A7D6VR59_9CLOTCarbohydratekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18105PE=4SV=1	REV__tr|A0A7D6VR59|A0A7D6VR59_9CLOTCarbohydratekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18105PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	618.3314819335938	2	617.342584	1232.67061	2.1408	0.0013216	-2.8252	-0.0017441	-0.68437	-0.00042249	617.341058651885	80.053	0.74644	80.053	79.741	80.487	0					23	17	2	0	0	0	0.027462	1	8161	8161		16.473	0	1	1481300	+		47231	31390	39169	39191	50672	50672					0.06358588019315903
QVWLELRY	8	Unmodified	_QVWLELRY_					0	0	0		ENST00000522362.6_1_8:26366474-26366684:-|nuORF	ENST00000522362.6_1_8:26366474-26366684:-|nuORF	ENST00000522362.6_1_8:26366474-26366684:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	553.802978515625	2	553.803291	1105.59203	-0.46359	-0.00025674	-3.4981	-0.0019372	-3.9617	-0.002194	553.8012438337539	66.393	0.72141	66.393	66.136	66.857	0					41	17	3	0	0	0	0.56195	1	6173	6173		71.296	20.103	1	4964200			47232	13137	39170	39192	50673	50673					0.0434573571421879
QVWVKFDIRG	10	Unmodified	_QVWVKFDIRG_					0	0	0		nc|ENSG00000168453|O43593-2|HR;ENSG00000168453|ENST00000381418|HR	nc|ENSG00000168453|O43593-2|HR	nc|ENSG00000168453|O43593-2|HR	MULTI-MSMS	OvCa9_classI_Rep4_	4	624.3473510742188	2	624.348397	1246.68224	-2.3549	-0.0014703	1.4895	0.00092996	-0.86538	-0.0005403	624.3490944582915	149.23	1.2985	147.8	147.28	148.58	-1.4344					56	26	3	0	0	0	0.79213	1	14734	14734		19.997	2.6318	1	86228			47233	6909	39171	39193	50674	50674					0.06876785042641131
QVYGRWYL	8	Unmodified	_QVYGRWYL_					0	0	0			REV__MER83C_dup5|chr1:206067539-206067903:+|3.296829639249633|0.1786861324868675|4.21|424.0|14|2|anti-sense	REV__MER83C_dup5|chr1:206067539-206067903:+|3.296829639249633|0.1786861324868675|4.21|424.0|14|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.2840576171875	2	542.782359	1083.55016	1.2223	0.00066346	4.1064	0.0022289	5.3287	0.0028923	542.7847329998486	79.259	0.35632	79.259	78.955	79.311	0					13	8	2	0	0	0	0.028476	1	8064	8064		42.474	18.272	1	965930	+		47234	28663	39172	39194	50675	50675					0.011731800256939096
QVYIRQLR	8	Unmodified	_QVYIRQLR_					0	0	0		nc|ENSG00000166181|Q9BZZ5-3|API5;nc|ENSG00000166181|Q9BZZ5-2|API5;nc|ENSG00000166181|Q9BZZ5-1|API5;ENSG00000166181|ENST00000531273|API5;nc|ENSG00000166181|Q9BZZ5-5|API5;SDHAF2-API5|3|fusion;SDHAF2-API5|2|fusion;nc|ENSG00000166181|Q9BZZ5-6|API5;SDHAF2-API5|1|fusion;ENST00000532267.1_1_11:43351536-43357422:+|nuORF	nc|ENSG00000166181|Q9BZZ5-3|API5	nc|ENSG00000166181|Q9BZZ5-3|API5	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.3010864257812	2	538.322183	1074.62981	1.8383	0.0009896	2.3463	0.0012631	4.1846	0.0022527	538.8265862955889	77.796	1.079	77.796	77.461	78.54	0					56	25	4	0	0	0	0.028476	1	7942	7942		25.45	0	1	2313700			47235	6648	39173	39195	50676	50676					0.0954824669968275
QVYKEEISR	9	Unmodified	_QVYKEEISR_					0	0	0		ENST00000373899.3_1_10:60146421-60154831:+|nuORF;nc|ENSG00000108064|Q00059-2|TFAM;ENSG00000108064|ENST00000487519|TFAM	ENST00000373899.3_1_10:60146421-60154831:+|nuORF	ENST00000373899.3_1_10:60146421-60154831:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.852294921875	2	576.306395	1150.59824	-1.2309	-0.0007094	-3.0548	-0.0017605	-4.2858	-0.0024699	576.303507008336	89.613	1.0636	87.533	87.044	88.108	-2.0805					44	20	3	0	0	0	0.027462	1	5513	5513		29.15	8.2026	1	31958			47236	2637	39174	39196	50677	50677					0.02896209155096585
QVYLAHALFPL	11	Unmodified	_QVYLAHALFPL_					0	0	0			REV__ENSG00000071539|ENST00000166345|TRIP13	REV__ENSG00000071539|ENST00000166345|TRIP13	MULTI-SECPEP	OvCa9_classI_Rep2	2	423.9384460449219	3	424.576408	1270.70739	0.26986	0.00011458	4.131	0.0017539	4.4008	0.0018685	424.5780459806378	79.36	1.2718	77.62	77.302	78.574	-1.7398					54	24	3	0	0	0	0.025714	1	6636	6636		38.754	9.2029	1	65565	+		47237	16903	39175	39197	50678	50678					0.08286839845209215
QVYLAHALFPL	11	Unmodified	_QVYLAHALFPL_					0	0	0			REV__ENSG00000071539|ENST00000166345|TRIP13	REV__ENSG00000071539|ENST00000166345|TRIP13	MULTI-MATCH	OvCa9_classI_Rep3	3		3	424.576408	1270.70739	0.9072	0.00038518	-0.75383	-0.00032006	0.15337	6.5119E-05	424.57594413199274	79.638	0.30817	77.298	77.103	77.412	-2.3399	-0.16113	-0.0059649	NaN	38.754	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6873	+		47238	16903	39175	39197							0.08286839845209215
QVYLDGIVRIL	11	Unmodified	_QVYLDGIVRIL_					0	0	0		ENSG00000196123|ENST00000563902|MATCAP1;ENST00000563918.5_1_16:67210716-67213197:-|nuORF;nc|ENSG00000196123|Q68EN5-3|MATCAP1;ENST00000561679.5_1_16:67210716-67212831:-|nuORF	ENSG00000196123|ENST00000563902|MATCAP1	ENSG00000196123|ENST00000563902|MATCAP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	431.2335510253906	3	430.258967	1287.75507	0.05724	2.4628E-05	-2.9263	-0.0012591	-2.8691	-0.0012345	430.2576637696841	40.56	0.21032	37.606	37.527	37.737	-2.9541					5	3	2	0	0	0	0.025908	1	1748	1748		27.644	0	1	5209.9			47239	8565	39176	39198	50679	50679					0.1227049404542413
QVYPLAIII	9	Unmodified	_QVYPLAIII_					0	0	0		nc|ENSG00000172995|Q9UBL0-6|ARPP21	nc|ENSG00000172995|Q9UBL0-6|ARPP21	nc|ENSG00000172995|Q9UBL0-6|ARPP21	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7940673828125	2	515.320786	1028.62702	-0.022327	-1.1506E-05	-1.4813	-0.00076336	-1.5036	-0.00077486	515.31943744668	122.26	1.0008	120.9	120.65	121.65	-1.3666					30	19	2	0	0	0	0.027456	1	11540	11540		26.796	12.659	1	23640			47240	15182	39177	39199	50680	50680					0.11384978522164602
QVYREMLSY	9	Unmodified	_QVYREMLSY_					0	0	0		tr|A0A7D6ZWD7|A0A7D6ZWD7_9CLOTM1familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07475PE=4SV=1	tr|A0A7D6ZWD7|A0A7D6ZWD7_9CLOTM1familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07475PE=4SV=1	tr|A0A7D6ZWD7|A0A7D6ZWD7_9CLOTM1familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07475PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	595.3228149414062	2	594.789524	1187.56449	1.4305	0.00085085	-3.0415	-0.0018091	-1.611	-0.0009582	595.2887082472679	119.22	0.32422	119.22	119.1	119.43	0					10	6	2	0	0	0	0.027461	1	13687	13687		25.574	0	1	187350			47241	35838	39178	39200	50681	50681					-0.021785356083000806
QVYRGALQK	9	Unmodified	_QVYRGALQK_					0	0	0		ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8057861328125	2	531.806365	1061.59818	-1.8902	-0.0010052	1.105	0.00058763	-0.78522	-0.00041759	531.806891935509	41.675	2.0149	38.695	38.023	40.037	-2.9804					85	38	5	0	0	0	0.062324	1	1892	1892		111.65	3.5608	1	829150			47242	5904	39179	39201	50682	50682					0.06984253945756791
QWDFDQLQ	8	Unmodified	_QWDFDQLQ_					0	0	0			REV__ENSG00000169019|ENST00000381571|COMMD8	REV__ENSG00000169019|ENST00000381571|COMMD8	MULTI-MSMS	OvCa9_classI_Rep2	2	540.2445678710938	2	540.243264	1078.47197	0.50491	0.00027277	0.95635	0.00051666	1.4613	0.00078944	540.2442971028864	128.71	1.188	128.48	128.18	129.37	-0.22697					58	23	3	0	0	0	0.73205	1	12619	12619		35.618	0	1	104470	+		47243	21424	39180	39202	50683	50683					-0.06412297350175322
QWFCLINEI	9	Unmodified	_QWFCLINEI_					0	0	0			REV__chr1:200580383-200581201|380|11.02|0.53|4.37|-|0|KIF14,KIF14|1	REV__chr1:200580383-200581201|380|11.02|0.53|4.37|-|0|KIF14,KIF14|1	MULTI-MSMS	OvCa99_classI_Rep5	1	583.2939453125	2	583.289159	1164.56377	2.2959	0.0013392	0.82858	0.0004833	3.1244	0.0018225	583.2892627038729	75.248	0.55826	75.248	75.005	75.563	0					34	13	4	0	0	0	0.33652	1	7471	7471		58.782	0.55203	1	1421700	+		47244	15810	39181	39203	50684	50684					-0.011933302573652327
QWFCLINEI	9	Unmodified	_QWFCLINEI_					0	0	0			REV__chr1:200580383-200581201|380|11.02|0.53|4.37|-|0|KIF14,KIF14|1	REV__chr1:200580383-200581201|380|11.02|0.53|4.37|-|0|KIF14,KIF14|1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	583.289159	1164.56377	2.2959	0.0013392	0.82858	0.0004833	3.1244	0.0018225	583.2892627038729	75.248	0.55826	75.248	75.005	75.563	0	0	0	NaN	58.782	34	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1421700	+		47245	15810	39181	39203							-0.011933302573652327
QWGKPAQPKL	10	Unmodified	_QWGKPAQPKL_					0	0	0		ENSG00000105278|ENST00000262961|ZFR2	ENSG00000105278|ENST00000262961|ZFR2	ENSG00000105278|ENST00000262961|ZFR2	MULTI-MSMS	OvCa99_classI_Rep5	1	576.8275146484375	2	576.82984	1151.64513	-0.45525	-0.0002626	-2.8264	-0.0016303	-3.2816	-0.0018929	576.8276056843554	33.31	0.7883	33.31	32.892	33.681	0					23	15	2	0	0	0	0.65434	1	1526	1526		35.618	8.8222	1	217370			47246	2437	39182	39204	50685	50685					0.07537113496891834
QWHYLDSL	8	Unmodified	_QWHYLDSL_					0	0	0		nc|ENSG00000082126|Q96JB8-4|MPP4	nc|ENSG00000082126|Q96JB8-4|MPP4	nc|ENSG00000082126|Q96JB8-4|MPP4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.8081665039062	2	531.256174	1060.49779	-1.2276	-0.00065214	4.3458	0.0023087	3.1183	0.0016566	531.2610996465153	79.456	0.14049	76.704	76.61	76.75	-2.7514					4	2	2	0	0	0	0.028476	1	6452	6452		50.025	18.495	1	10435			47247	14903	39183	39205	50686	50686					-0.030034031079139822
QWKKGNMLV	9	Unmodified	_QWKKGNMLV_					0	0	0		ENST00000509268.1_1_5:82400826-82406918:+|nuORF	ENST00000509268.1_1_5:82400826-82406918:+|nuORF	ENST00000509268.1_1_5:82400826-82406918:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.7850952148438	2	552.305144	1102.59573	1.2866	0.00071062	0.82894	0.00045783	2.1156	0.0011684	552.3054210989534	30.637	0.88684	27.927	27.607	28.494	-2.7097					23	17	2	0	0	0	0.027462	1	889	889		31.955	11.008	1	45813			47248	12958	39184	39206	50687	50687					0.04854082216434108
QWKKIADSL	9	Unmodified	_QWKKIADSL_					0	0	0			REV__nc|ENSG00000011275|Q9NWF9-3|RNF216	REV__nc|ENSG00000011275|Q9NWF9-3|RNF216	MULTI-MSMS	OvCa9_classI_Rep2	2	544.8106689453125	2	544.808574	1087.60259	-0.34732	-0.00018922	-0.44413	-0.00024196	-0.79144	-0.00043119	544.807894746868	78.293	2.6731	76.553	75.205	77.878	-1.7398					144	51	4	0	0	0	0.19758	1	6565	6565		76.774	4.8967	1	701020	+		47249	16487	39185	39207	50688	50688					0.06229718368649628
QWKKKKEG	8	Unmodified	_QWKKKKEG_					0	0	0			REV__chrX:55159228-55161006|92|12.28|0.29|5.42|-|0|FAM104B,None|1	REV__chrX:55159228-55161006|92|12.28|0.29|5.42|-|0|FAM104B,None|1	MULTI-MSMS	OvCa9_classI_Rep2	2	516.302978515625	2	516.303458	1030.59236	-1.364	-0.00070426	0.62015	0.00032019	-0.7439	-0.00038408	516.3037096883031	61.9	2.366	59.14	58.568	60.934	-2.7593					127	45	4	0	0	0	0.65062	1	4655	4655		53.351	0	1	1077700	+		47250	16142	39186	39208	50689	50689					0.07829155434069435
QWKLLQQELLK	11	Unmodified	_QWKLLQQELLK_					0	0	0		PSTK|p.R80Q|1|0.05|ENSG00000179988|chr10:122982755-122982755|G/A|missense_variant	PSTK|p.R80Q|1|0.05|ENSG00000179988|chr10:122982755-122982755|G/A|missense_variant	PSTK|p.R80Q|1|0.05|ENSG00000179988|chr10:122982755-122982755|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.2875061035156	3	476.285405	1425.83439	0.32315	0.00015391	4.3288	0.0020618	4.652	0.0022157	476.2874255337455	22.278	1.0813	20.939	20.675	21.757	-1.3386					78	26	4	0	0	0	0.71831	1	291	291		23.378	4.1152	1	162610			47251	15527	39187	39209	50690	50690					0.13850140999579708
QWPIAIPFC	9	Unmodified	_QWPIAIPFC_					0	0	0			REV__ENST00000531118.5_1_11:35198231-35211698:+|nuORF	REV__ENST00000531118.5_1_11:35198231-35211698:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.8171997070312	2	537.775688	1073.53682	-0.26807	-0.00014416	-1.5882	-0.0008541	-1.8563	-0.00099826	537.7754347843936	29.859	0.24932	29.859	29.686	29.935	0					7	4	2	0	0	0	0.027462	1	1084	1084		35.201	1.0282	1	16771	+		47252	27212	39188	39210	50691	50691					0.0029960592207771697
QWPQNQLGHSK	11	Unmodified	_QWPQNQLGHSK_					0	0	0			REV__nc|ENSG00000086102|Q12986-3|NFX1	REV__nc|ENSG00000086102|Q12986-3|NFX1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	441.7887878417969	3	441.558187	1321.65273	-0.89677	-0.00039597	-0.67838	-0.00029955	-1.5752	-0.00069552	441.55783536581265	65.627	0.53433	62.141	61.938	62.472	-3.4854					16	10	2	0	0	0	0.025668	1	4757	4757		35.178	23.542	1	23007	+		47253	17146	39189	39211	50692	50692					0.004772210265173271
QWQTVINRV	9	Unmodified	_QWQTVINRV_					0	0	0			REV__ENSG00000100109|ENST00000407690|TFIP11	REV__ENSG00000100109|ENST00000407690|TFIP11	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.30126953125	2	572.317097	1142.61964	-0.011798	-6.7524E-06	-0.42088	-0.00024087	-0.43267	-0.00024763	572.3167405018528	46.479	0.39161	46.479	46.284	46.676	0					14	8	2	0	0	0	0.027462	1	3274	3274		45.972	11.8	1	159950	+		47254	17368	39190	39212	50693	50693					0.0540363897446241
QWRARRWRWW	10	Unmodified	_QWRARRWRWW_					0	0	0			REV__nc|ENSG00000171160|Q8NDC4-2|MORN4	REV__nc|ENSG00000171160|Q8NDC4-2|MORN4	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8202514648438	3	529.616594	1585.82795	-0.061835	-3.2749E-05	-4.4599	-0.002362	-4.5217	-0.0023948	529.6142029958559	45.068	0.35958	45.068	44.886	45.245	0					10	7	2	0	0	0	0.027411	1	3071	3071		11.636	0	1	56183	+		47255	29003	39191	39213	50694	50694					0.058471054020401425
QWRKHLKK	8	Unmodified	_QWRKHLKK_					0	0	0		ENST00000388923.4_1_6:88058592-88060190:+|nuORF	ENST00000388923.4_1_6:88058592-88060190:+|nuORF	ENST00000388923.4_1_6:88058592-88060190:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	562.3434448242188	2	562.345992	1122.67743	-1.142	-0.00064221	-3.8102	-0.0021426	-4.9522	-0.0027848	562.3438081477608	141.84	4.7959	141.62	140.24	145.03	-0.22697					133	96	2	0	0	0	0.75915	1	14310	14310		20.482	1.3783	1	113870			47256	11193	39192	39214	50695	50695					0.12099945690556524
QWRRRRRPQQP	11	Unmodified	_QWRRRRRPQQP_					0	0	0		ENST00000295206.6_1_2:119600812-119604160:-|nuORF	ENST00000295206.6_1_2:119600812-119604160:-|nuORF	ENST00000295206.6_1_2:119600812-119604160:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.7755737304688	3	521.966174	1562.87669	-0.53063	-0.00027697	-2.2469	-0.0011728	-2.7775	-0.0014498	522.2992261150993	74.88	0.29179	71.649	71.434	71.726	-3.2308					7	5	2	0	0	0	0.026435	1	5855	5855		6.001	0	1	108210			47257	10120	39193	39215	50696	50696					0.1177697397117754
QWRRVAGEA	9	Unmodified	_QWRRVAGEA_					0	0	0			REV__ENST00000203630.9_2_12:6861510-6862293:-|nuORF	REV__ENST00000203630.9_2_12:6861510-6862293:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3671875	2	536.785964	1071.55738	-0.7363	-0.00039524	-3.6616	-0.0019655	-4.3979	-0.0023608	536.7839413001147	50.4	1.0928	50.4	49.856	50.949	0					56	24	3	0	0	0	0.027433	1	3866	3866		64.207	28.589	1	5021500	+		47258	23698	39194	39216	50697	50697					0.02445912626126301
QWTSSLVL	8	Unmodified	_QWTSSLVL_					0	0	0		ENSG00000215041|ENST00000399464|NEURL4;nc|ENSG00000215041|Q96JN8-2|NEURL4;ENST00000572029.1_1_17:7221711-7224101:-|nuORF	ENSG00000215041|ENST00000399464|NEURL4	ENSG00000215041|ENST00000399464|NEURL4	MULTI-MSMS	OvCa99_classI_Rep5	1	467.2535400390625	2	467.255643	932.496732	-0.49622	-0.00023186	-3.7427	-0.0017488	-4.2389	-0.0019807	467.2537951569731	28.962	0.74807	28.962	28.688	29.436	0					30	14	3	0	0	0	0.66057	1	991	991		51.335	4.569	1	143300			47259	9199	39195	39217	50698	50698					0.027783825231722403
QYAPLLAVF	9	Unmodified	_QYAPLLAVF_					0	0	0		ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	ENSG00000136261|ENST00000258761|BZW2	MULTI-MSMS	OvCa99_classI_Rep5	1	511.29107666015625	2	511.289485	1020.56442	0.81265	0.0004155	1.2695	0.00064908	2.0821	0.0010646	511.2899460662673	158.85	0.76733	158.85	158.37	159.14	0					40	15	4	0	0	0	0.22913	1	18615	18615		71.378	2.8932	1	608480			47260	4478	39196	39218	50699	50699					0.0549583245398253
QYASAFHFL	9	Unmodified	_QYASAFHFL_					0	0	0		ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4;nc|ENSG00000140463|Q96RK4-3|BBS4;ENST00000562219.1_1_15:73023651-73027536:+|nuORF	ENSG00000140463|ENST00000268057|BBS4	ENSG00000140463|ENST00000268057|BBS4	MULTI-MSMS	OvCa99_classI_Rep5	1	542.2682495117188	2	542.266542	1082.51853	1.4744	0.00079953	0.32192	0.00017457	1.7963	0.00097409	542.2666107922153	112.08	1.1368	112.08	111.74	112.88	0					63	24	5	0	0	0	0.071436	2	12766	12743;12766		106.42	21.056	1	3525800			47261	4842	39197	39219	50700;50701	50701					-0.019428127282481
QYEKLFHKW	9	Unmodified	_QYEKLFHKW_					0	0	0		ENSG00000115942|ENST00000234296|ORC2	ENSG00000115942|ENST00000234296|ORC2	ENSG00000115942|ENST00000234296|ORC2	MULTI-MSMS	OvCa99_classI_Rep5	1	426.8938903808594	3	426.892507	1277.65569	0.7673	0.00032756	-0.40211	-0.00017166	0.3652	0.0001559	426.8922719192937	67.186	0.82462	67.186	66.898	67.723	0					46	20	4	0	0	0	0.48047	1	6277	6277		44.377	4.319	1	1926100			47262	3138	39198	39220	50702	50702					0.027970961513346992
QYEPLFHML	9	Unmodified	_QYEPLFHML_					0	0	0		ENSG00000171608|ENST00000377346|PIK3CD;nc|ENSG00000171608|O00329-2|PIK3CD	ENSG00000171608|ENST00000377346|PIK3CD	ENSG00000171608|ENST00000377346|PIK3CD	MULTI-MSMS	OvCa99_classI_Rep5	1	589.2911987304688	2	589.289159	1176.56377	1.01	0.00059518	1.0185	0.0006002	2.0285	0.0011954	589.2896975781712	123.76	0.81625	123.76	123.47	124.28	0					51	17	4	0	0	0	0.018995	1	14275	14275		148.21	54.2	1	1184100			47263	7219	39199	39221	50703	50703					-0.01745330257358546
QYFPKAPEF	9	Unmodified	_QYFPKAPEF_					0	0	0		nc|ENSG00000090686|Q86UV5-5|USP48;nc|ENSG00000090686|Q86UV5-2|USP48;ENSG00000090686|ENST00000308271|USP48;nc|ENSG00000090686|Q86UV5-8|USP48;nc|ENSG00000090686|Q86UV5-3|USP48	nc|ENSG00000090686|Q86UV5-5|USP48	nc|ENSG00000090686|Q86UV5-5|USP48	MULTI-MSMS	OvCa99_classI_Rep5	1	563.7837524414062	2	563.782025	1125.5495	3.0227	0.0017041	-0.75544	-0.0004259	2.2672	0.0012782	563.7813946265197	97.912	1.2041	97.912	97.479	98.683	0					63	27	4	0	0	0	0.066102	2	10781	10756;10781		109.48	46.172	1	6555500			47264	1846	39200	39222	50704;50705	50705					-0.008256594140220841
QYHFRRFRQRF	11	Unmodified	_QYHFRRFRQRF_					0	0	0			REV__nc|ENSG00000140265|Q8IWY8-4|ZSCAN29	REV__nc|ENSG00000140265|Q8IWY8-4|ZSCAN29	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.7968139648438	3	547.627158	1639.85965	2.0245	0.0011087	-1.8059	-0.00098896	0.21861	0.00011972	547.6262852875634	85.014	0.41049	85.014	84.8	85.211	0					11	9	2	0	0	0	0.026534	1	8887	8887		6.001	0.30226	1	145080	+		47265	19656	39201	39223	50706	50706					0.06531053365324624
QYIAADRK	8	Unmodified	_QYIAADRK_					0	0	0		tr|A0A553SL96|A0A553SL96_NIACIDnaDdomainproteinOS=NialliacirculansOX=1397GN=CEQ21_20210PE=4SV=1	tr|A0A553SL96|A0A553SL96_NIACIDnaDdomainproteinOS=NialliacirculansOX=1397GN=CEQ21_20210PE=4SV=1	tr|A0A553SL96|A0A553SL96_NIACIDnaDdomainproteinOS=NialliacirculansOX=1397GN=CEQ21_20210PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	482.7648010253906	2	482.764166	963.513779	-0.52743	-0.00025462	3.4366	0.0016591	2.9092	0.0014045	482.76570436001924	28.732	3.4175	28.732	28.439	31.857	0					119	68	4	0	0	0	0.66057	1	946	946		51.335	13.524	1	368670			47266	33700	39202	39224	50707	50707					0.030563031289943865
QYILFPLRF	9	Unmodified	_QYILFPLRF_					0	0	0		ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	MULTI-MSMS	OvCa99_classI_Rep5	1	598.845947265625	2	598.844959	1195.67537	1.6326	0.00097765	-0.020331	-1.2175E-05	1.6122	0.00096548	598.8448952909132	147.59	2.1036	147.59	147.21	149.31	0					108	42	5	0	0	0	0.047062	1	17268	17268		120.62	29.844	1	3354100			47267	2173	39203	39225	50708	50708					0.08535472162066071
QYKLSALL	8	Unmodified	_QYKLSALL_					0	0	0			REV__ENST00000560197.5_1_15:39160624-39178953:-|nuORF	REV__ENST00000560197.5_1_15:39160624-39178953:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	468.28155517578125	2	468.28166	934.548768	0.56109	0.00026275	0.010093	4.7262E-06	0.57119	0.00026748	468.28153793761106	74.088	0.72881	74.088	73.829	74.557	0					33	18	2	0	0	0	0.35163	1	7309	7309		97.473	8.8298	1	2455500	+		47268	27611	39204	39226	50709	50709					0.07887545936932838
QYLELLEQL	9	Unmodified	_QYLELLEQL_					0	0	0			REV__ENSG00000167131|ENST00000417826|CCDC103	REV__ENSG00000167131|ENST00000417826|CCDC103	MULTI-MSMS	OvCa99_classI_Rep5	1	574.8146362304688	2	574.813522	1147.61249	-0.49452	-0.00028426	1.6133	0.00092733	1.1187	0.00064307	574.8143608011273	69.428	0.81696	69.428	69.145	69.962	0					36	19	2	0	0	0	0.040625	1	6626	6626		126.24	41.082	1	1685800	+		47269	21255	39205	39227	50710	50710					0.044588615833845324
QYLELLEQL	9	Unmodified	_QYLELLEQL_					0	0	0			REV__ENSG00000167131|ENST00000417826|CCDC103	REV__ENSG00000167131|ENST00000417826|CCDC103	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	574.813522	1147.61249	-0.49452	-0.00028426	1.6133	0.00092733	1.1187	0.00064307	574.8143608011273	69.428	0.81696	69.428	69.145	69.962	0	0	0	NaN	126.24	36	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1685800	+		47270	21255	39205	39227							0.044588615833845324
QYLKKKRK	8	Unmodified	_QYLKKKRK_					0	0	0		tr|A0A7D6VX14|A0A7D6VX14_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06395PE=4SV=1	tr|A0A7D6VX14|A0A7D6VX14_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06395PE=4SV=1	tr|A0A7D6VX14|A0A7D6VX14_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06395PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.3096923828125	2	546.356025	1090.6975	-0.21665	-0.00011837	-1.6708	-0.00091287	-1.8875	-0.0010312	546.3540100078037	51.141	0.25493	51.141	51.036	51.291	0					7	5	2	0	0	0	0.028476	1	3913	3913		60.294	6.9425	1	72095			47271	35267	39206	39228	50711	50711					0.15577696630498394
QYLLLQVVTT	10	Unmodified	_QYLLLQVVTT_					0	0	0		ENST00000473653.1_1_1:7846839-7848157:+|nuORF	ENST00000473653.1_1_1:7846839-7848157:+|nuORF	ENST00000473653.1_1_1:7846839-7848157:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3428955078125	2	589.344989	1176.67542	-3.0463	-0.0017953	-0.38122	-0.00022467	-3.4276	-0.00202	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.75313	1	14922	14922		24.519	0.99649	1	272220			47272	12416	39207	39229	50712	50712					0.09415427371413898
QYLNDSSYPT	10	Unmodified	_QYLNDSSYPT_					0	0	0			REV__nc|ENSG00000184937|P19544-8|WT1	REV__nc|ENSG00000184937|P19544-8|WT1	MULTI-MSMS	OvCa9_classI_Rep3	3	594.2649536132812	2	594.264393	1186.51423	0.03458	2.055E-05	-0.013345	-7.9303E-06	0.021235	1.2619E-05	594.2643504663625	98.82	1.1323	97.135	96.852	97.985	-1.685					73	21	4	0	0	0	0.65434	1	6614	6614		35.618	1.4457	1	642600	+		47273	22461	39208	39230	50713	50713					-0.07156366732488095
QYLPHVARL	9	Unmodified	_QYLPHVARL_					0	0	0		ENST00000467910.5_1_9:136231851-136242840:-|nuORF;nc|ENSG00000148248|O15260-3|SURF4;nc|ENSG00000148248|O15260-2|SURF4;ENSG00000148248|ENST00000371989|SURF4	ENST00000467910.5_1_9:136231851-136242840:-|nuORF	ENST00000467910.5_1_9:136231851-136242840:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	548.8175659179688	2	548.816733	1095.61891	0.81957	0.00044979	0.080094	4.3957E-05	0.89966	0.00049375	548.8166566178054	74.557	1.1538	74.557	74.176	75.33	0					61	28	3	0	0	0	0.19758	1	7379	7379		76.774	7.9873	1	4412300			47274	5393	39209	39231	50714	50714					0.07492844325406622
QYLPSPPLL	9	Unmodified	_QYLPSPPLL_					0	0	0		ENSG00000120457|ENST00000529694|KCNJ5	ENSG00000120457|ENST00000529694|KCNJ5	ENSG00000120457|ENST00000529694|KCNJ5	MULTI-MSMS	OvCa99_classI_Rep5	1	514.2964477539062	2	514.294768	1026.57498	2.001	0.0010291	-0.25916	-0.00013329	1.7419	0.00089583	514.2944908131044	137.5	0.71013	137.5	137.16	137.87	0					38	14	3	0	0	0	0.18193	1	16057	16057		79.451	8.1553	1	239050			47275	3432	39210	39232	50715	50715					0.0627581510843811
QYLRRLHYF	9	Unmodified	_QYLRRLHYF_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	OvCa99_classI_Rep5	1	432.57281494140625	3	432.571768	1294.69348	-0.28456	-0.00012309	0.27268	0.00011795	-0.011875	-5.1368E-06	432.5718008137724	68.139	1.1355	68.139	67.842	68.977	0					59	27	4	0	0	0	0.53483	1	6431	6431		39.253	9.7021	1	2288900			47276	8118	39211	39233	50716	50716					0.057916071367799304
QYMKIISSF	9	Unmodified	_QYMKIISSF_					0	0	0		ENST00000514825.1_1_5:132437411-132440125:+|nuORF;ENSG00000170606|ENST00000304858|HSPA4	ENST00000514825.1_1_5:132437411-132440125:+|nuORF	ENST00000514825.1_1_5:132437411-132440125:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	558.7936401367188	2	558.791535	1115.56852	1.0507	0.00058714	0.63579	0.00035528	1.6865	0.00094241	558.7915669406652	105.59	0.78466	105.59	105.36	106.14	0					39	17	3	0	0	0	0.14998	1	11866	11866		84.916	13.62	1	2810400			47277	7122	39212	39234	50717	50717					0.015355538854009865
QYNPHVHQL	9	Unmodified	_QYNPHVHQL_					0	0	0		nc|ENSG00000151208|Q8TDM6-2|DLG5;ENSG00000151208|ENST00000372391|DLG5;ENST00000459739.5_1_10:79567604-79581271:-|nuORF;nc|ENSG00000151208|Q8TDM6-5|DLG5;ENST00000475613.6_1_10:79552200-79579275:-|nuORF;ENST00000463362.5_1_10:79552200-79579794:-|nuORF;nc|ENSG00000151208|Q8TDM6-4|DLG5	nc|ENSG00000151208|Q8TDM6-2|DLG5	nc|ENSG00000151208|Q8TDM6-2|DLG5	MULTI-MSMS	OvCa99_classI_Rep5	1	568.2862548828125	2	568.285797	1134.55704	0.48661	0.00027653	-0.90086	-0.00051195	-0.41425	-0.00023541	568.2852488473493	45.948	1.2976	45.948	45.159	46.456	0					79	29	5	0	0	0	0.13482	1	3204	3204		87.754	22.289	1	3977000			47278	5540	39213	39235	50718	50718					-0.004855070937082928
QYNPKFQTL	9	Unmodified	_QYNPKFQTL_					0	0	0		ENSG00000116580|ENST00000368331|GON4L;nc|ENSG00000116580|Q3T8J9-3|GON4L;nc|ENSG00000116580|Q3T8J9-2|GON4L;nc|ENSG00000163374|Q9H869-4|YY1AP1;nc|ENSG00000163374|Q9H869-9|YY1AP1;nc|ENSG00000163374|Q9H869-8|YY1AP1;nc|ENSG00000163374|Q9H869|YY1AP1;ENSG00000163374|ENST00000355499|YY1AP1;nc|ENSG00000163374|Q9H869-3|YY1AP1;YY1AP1|p.N771Tfs*7|1|0.1|ENSG00000163374|chr1:155659736-155659736|T/-|frameshift_variant;ENST00000436865.5_1_1:155629450-155649007:-|nuORF;nc|ENSG00000163374|Q9H869-6|YY1AP1;nc|ENSG00000163374|Q9H869-5|YY1AP1;ENST00000496324.5_1_1:155642327-155650230:-|nuORF;YY1AP1-ARHGEF2|2|fusion;YY1AP1-ARHGEF2|3|fusion;YY1AP1-ARHGEF2|1|fusion;YY1AP1-ARHGEF2|14|fusion;YY1AP1-ARHGEF2|13|fusion;YY1AP1-ARHGEF2|8|fusion;YY1AP1-ARHGEF2|7|fusion;YY1AP1-ARHGEF2|16|fusion;YY1AP1-ARHGEF2|15|fusion;YY1AP1-ARHGEF2|4|fusion;YY1AP1-ARHGEF2|6|fusion;YY1AP1-ARHGEF2|5|fusion;YY1AP1-ARHGEF2|12|fusion;YY1AP1-ARHGEF2|11|fusion;YY1AP1-ARHGEF2|10|fusion;YY1AP1-ARHGEF2|9|fusion;ARHGEF2-GON4L|1|fusion;ARHGEF2-GON4L|2|fusion;ARHGEF2-GON4L|3|fusion	ENSG00000116580|ENST00000368331|GON4L;YY1AP1-ARHGEF2|2|fusion;ARHGEF2-GON4L|1|fusion	YY1AP1-ARHGEF2|2|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	569.80029296875	2	569.798206	1137.58186	2.0673	0.0011779	-0.12799	-7.2929E-05	1.9393	0.001105	569.7980164478925	76.584	0.84695	76.584	76.238	77.085	0					60	20	4	0	0	0	0.074342	1	7697	7697		104.75	8.5561	1	9794300			47279	36311;112;3187	39214	39236	50719	50719					0.018571279890011283
QYNTYPIKLF	10	Unmodified	_QYNTYPIKLF_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OvCa99_classI_Rep5	1	644.348388671875	2	643.842613	1285.67067	1.4982	0.00096457	0.1597	0.00010282	1.6578	0.0010674	644.3439894780637	119.51	0.59048	119.51	119.29	119.88	0					32	14	3	0	0	0	0.52439	1	13719	13719		51.193	5.2204	1	563370			47280	1242	39215	39237	50720	50720					0.03926543228635637
QYPFCALN	8	Unmodified	_QYPFCALN_					0	0	0			REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.2720947265625	2	478.220746	954.426938	0.44648	0.00021351	-3.0723	-0.0014692	-2.6258	-0.0012557	478.21917222624705	73.889	0.49873	73.889	73.678	74.176	0					22	12	2	0	0	0	0.028476	1	7307	7307		40.573	17.53	1	523650	+		47281	20958	39216	39238	50721	50721					-0.05209819417086692
QYPFPSTLV	9	Unmodified	_QYPFPSTLV_					0	0	0		ENST00000478484.5_1_2:27851925-27854072:+|nuORF	ENST00000478484.5_1_2:27851925-27854072:+|nuORF	ENST00000478484.5_1_2:27851925-27854072:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	526.2791137695312	2	526.276575	1050.5386	-0.73995	-0.00038942	3.8571	0.0020299	3.1171	0.0016405	526.2785190526314	137.4	1.042	137.17	136.94	137.98	-0.22697					32	21	2	0	0	0	0.61208	1	13698	13698		30.504	1.3541	1	33056			47282	12493	39217	39239	50722	50722					0.015349382117165078
QYPGRSLVF	9	Unmodified	_QYPGRSLVF_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	OvCa99_classI_Rep5	1	533.789306640625	2	533.787641	1065.56073	2.6915	0.0014367	-0.7113	-0.00037968	1.9802	0.001057	533.7870474366783	90.269	1.2153	90.269	89.722	90.938	0					74	29	4	0	0	0	0.14998	1	9658	9658		84.916	30.139	1	5261300			47283	1827	39218	39240	50723	50723					0.030571626801247476
QYPGRSLVF	9	Unmodified	_QYPGRSLVF_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	533.787641	1065.56073	-1.8196	-0.00097126	2.0456	0.0010919	0.22606	0.00012067	534.2908478628475	92.979	0.65143	90.471	90.212	90.863	-2.5072	0.10133	0.0028252	NaN	84.916	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42842			47284	1827	39218	39240							0.030571626801247476
QYPVIIHLI	9	Unmodified	_QYPVIIHLI_					0	0	0		ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	548.3324584960938	2	548.331685	1094.64882	1.4679	0.0008049	0.48372	0.00026524	1.9516	0.0010701	548.3317874210142	127.43	1.7829	127.43	126.87	128.65	0					115	38	5	0	0	0	0.042822	3	14746	14723;14746;14770		124.32	40.983	1	2832800			47285	1349	39219	39241	50724;50725;50726	50725					0.10527783270754298
QYPVIIHLIW	10	Unmodified	_QYPVIIHLIW_					0	0	0		ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	641.3712768554688	2	641.371341	1280.72813	1.7102	0.0010968	-0.27539	-0.00017663	1.4348	0.00092022	641.3711644070404	149.23	1.4245	149.23	148.62	150.05	0					85	28	4	0	0	0	0.39971	1	17453	17453		68.485	20.827	1	744450			47286	1349	39220	39242	50727	50727					0.09899430224891148
QYQVVIGEHV	10	Unmodified	_QYQVVIGEHV_					0	0	0		tr|A0A553SJ57|A0A553SJ57_NIACIProtein-N(Pi)-phosphohistidine--sugarphosphotransferaseOS=NialliacirculansOX=1397GN=CEQ21_16155PE=4SV=1	tr|A0A553SJ57|A0A553SJ57_NIACIProtein-N(Pi)-phosphohistidine--sugarphosphotransferaseOS=NialliacirculansOX=1397GN=CEQ21_16155PE=4SV=1	tr|A0A553SJ57|A0A553SJ57_NIACIProtein-N(Pi)-phosphohistidine--sugarphosphotransferaseOS=NialliacirculansOX=1397GN=CEQ21_16155PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.2691040039062	2	586.308938	1170.60332	0.78176	0.00045835	-2.4869	-0.0014581	-1.7051	-0.00099971	586.3076854620009	139.52	1.287	139.52	138.88	140.17	0					45	26	2	0	0	0	0.026734	1	16306	16306		39.253	5.3312	1	44567			47287	33465	39221	39243	50728	50728					0.024845130177027386
QYRLKLLE	8	Unmodified	_QYRLKLLE_					0	0	0		ENST00000483208.5_2_15:42646603-42694336:+|nuORF;nc|ENSG00000092529|P20807-2|CAPN3;nc|ENSG00000092529|P20807-3|CAPN3;ENSG00000092529|ENST00000397163|CAPN3	ENST00000483208.5_2_15:42646603-42694336:+|nuORF	ENST00000483208.5_2_15:42646603-42694336:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8160400390625	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.74971	1	11395	11395		26.796	4.8362	1	178650			47288	1897	39222	39244	50729	50729					0.09498308748334239
QYSIKKLAY	9	Unmodified	_QYSIKKLAY_					0	0	0			REV__nc|ENSG00000165078|Q8N4T0-2|CPA6	REV__nc|ENSG00000165078|Q8N4T0-2|CPA6	MULTI-MSMS	OvCa9_classI_Rep2	2	557.3165893554688	2	557.318774	1112.623	-1.9914	-0.0011099	-0.89828	-0.00050063	-2.8897	-0.0016105	557.3181775816473	36.131	1.4315	33.421	33.152	34.583	-2.7097					66	28	4	0	0	0	0.60342	1	1560	1560		31.53	2.3803	1	384370	+		47289	21053	39223	39245	50730	50730					0.07118889028447484
QYTHKIYHL	9	Unmodified	_QYTHKIYHL_					0	0	0		ENSG00000174238|ENST00000313486|PITPNA;ENST00000471825.1_1_22:28306950-28315179:-|nuORF;ENST00000460566.5_1_22:28293057-28315179:-|nuORF;PITPNA-PRPF8|2|fusion;ENSG00000180957|ENST00000335272|PITPNB;nc|ENSG00000180957|P48739-2|PITPNB;nc|ENSG00000180957|P48739-3|PITPNB;PITPNA-PRPF8|1|fusion	ENSG00000174238|ENST00000313486|PITPNA;ENSG00000180957|ENST00000335272|PITPNB;PITPNA-PRPF8|1|fusion	PITPNA-PRPF8|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	601.8201904296875	2	601.819473	1201.62439	0.24844	0.00014952	0.27453	0.00016522	0.52297	0.00031474	601.8196378646921	46.604	1.1393	46.604	46.326	47.465	0					61	25	4	0	0	0	0.11471	2	3296	3296;3320		65.803	18.497	1	3368500			47290	15503;7904;7451	39224	39246	50731;50732	50731					0.031645231171978594
QYTQALEKF	9	Unmodified	_QYTQALEKF_					0	0	0		ASAP2|p.I415Cfs*22|1|0.04|ENSG00000151693|chr2:9356260-9356261|-/TGCAGAA|frameshift_variant;nc|ENSG00000151693|O43150-2|ASAP2;ENSG00000151693|ENST00000281419|ASAP2	ASAP2|p.I415Cfs*22|1|0.04|ENSG00000151693|chr2:9356260-9356261|-/TGCAGAA|frameshift_variant	ASAP2|p.I415Cfs*22|1|0.04|ENSG00000151693|chr2:9356260-9356261|-/TGCAGAA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	564.2908935546875	2	564.290214	1126.56587	1.6915	0.00095449	0.43755	0.00024691	2.129	0.0012014	564.290361921423	80.893	0.66959	80.893	80.702	81.372	0					44	15	4	0	0	0	0.060996	1	8312	8312		112.41	22.041	1	3206600			47291	119	39225	39247	50733	50733					0.007654217520666862
QYVKNEKM	8	Unmodified	_QYVKNEKM_					0	0	0			REV__tr|A0A553SFR1|A0A553SFR1_NIACIS1motifdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09255PE=3SV=1	REV__tr|A0A553SFR1|A0A553SFR1_NIACIS1motifdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09255PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	520.2675170898438	2	520.265684	1038.51682	0.40372	0.00021004	1.9995	0.0010403	2.4032	0.0012503	520.2665765593395	131.83	1.6957	131.83	131.25	132.94	0					116	35	4	0	0	0	0.57734	1	15321	15321		68.787	0	1	1907800	+		47292	29610	39226	39248	50734	50734					-0.0009018980849759828
QYVTQINRL	9	Unmodified	_QYVTQINRL_					0	0	0		nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1;nc|ENSG00000124126|Q8TCU6-2|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	nc|ENSG00000124126|Q8TCU6-3|PREX1	MULTI-MSMS	OvCa99_classI_Rep5	1	567.8182983398438	2	567.81693	1133.61931	2.3067	0.0013098	-0.22367	-0.000127	2.083	0.0011828	567.8167565930651	78.38	0.74107	78.38	77.884	78.625	0					26	17	2	0	0	0	0.064985	1	7938	7938		110.12	32.802	1	2874200			47293	14997	39227	39249	50735	50735					0.05784219254610434
QYVVIIQNK	9	Unmodified	_QYVVIIQNK_					0	0	0		ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	ENSG00000111845|ENST00000379568|PAK1IP1	MULTI-MSMS	OvCa99_classI_Rep5	1	552.82666015625	2	552.824224	1103.63389	2.0018	0.0011066	0.29099	0.00016087	2.2928	0.0012675	552.8248166468763	87.694	1.6205	87.694	86.931	88.551	0					159	38	6	0	0	0	0.48324	1	9323	9323		44.117	4.864	1	6785400			47294	2857	39228	39250	50736	50736					0.08622291402775772
QYVYWLHML	9	Unmodified	_QYVYWLHML_					0	0	0		ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	MULTI-MSMS	OvCa99_classI_Rep5	1	626.8138427734375	2	626.812802	1251.61105	2.1214	0.0013297	-0.017704	-1.1097E-05	2.1037	0.0013186	626.8126715515251	136.85	1.0092	136.85	136.54	137.54	0					50	20	4	0	0	0	0.45513	2	15948	15948;15971		46.766	15.237	1	681700			47295	4433	39229	39251	50737;50738	50737					-0.004690509863849002
QYYLLVNRQIQ	11	Unmodified	_QYYLLVNRQIQ_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.2699279785156	3	479.933143	1436.7776	1.3551	0.00065037	-1.0037	-0.00048172	0.35139	0.00016864	480.26644440673095	83.453	0.33578	83.453	83.335	83.671	0					9	7	2	0	0	0	0.026033	1	8682	8682		35.178	15.148	1	81552			47296	8917	39230	39252	50739	50739					0.07668093443021462
RAAAEAIAATK	11	Unmodified	_RAAAEAIAATK_					0	0	0			REV__ENST00000225726.9_1_17:61843531-61850919:-|nuORF	REV__ENST00000225726.9_1_17:61843531-61850919:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	536.8076171875	2	536.809105	1071.60366	0.23953	0.00012858	-0.72479	-0.00038907	-0.48525	-0.00026049	536.808594253858	65.887	1.3438	63.191	62.771	64.114	-2.6958					79	26	4	0	0	0	0.59615	1	5125	5125		45.022	5.7694	1	1324500	+		47297	23760	39231	39253	50740	50740					0.0707193273754001
RAAAFKLLL	9	Unmodified	_RAAAFKLLL_					0	0	0		ENSG00000102539|ENST00000218721|MLNR	ENSG00000102539|ENST00000218721|MLNR	ENSG00000102539|ENST00000218721|MLNR	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.29248046875	2	501.826569	1001.63859	-0.3569	-0.0001791	0.48865	0.00024522	0.13176	6.6118E-05	501.8265428883973	64.47	0.37778	64.47	64.294	64.672	0					16	8	3	0	0	0	0.027456	1	5874	5874		23.042	9.2672	1	385370			47298	2242	39232	39254	50741	50741					0.1378322033619952
RAAAGFVHA	9	Unmodified	_RAAAGFVHA_					0	0	0			REV__ENST00000265993.13_1_10:97453420-97453663:-|nuORF	REV__ENST00000265993.13_1_10:97453420-97453663:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.2643737792969	2	450.245944	898.477334	-0.11415	-5.1394E-05	-1.0186	-0.00045861	-1.1327	-0.00051	450.2454989545556	66.417	0.3908	62.927	62.708	63.099	-3.4902					11	7	2	0	0	0	0.027462	1	4816	4816		19.36	3.7182	1	25022	+		47299	24039	39233	39255	50742	50742					0.024034710229329903
RAAAIPPIQV	10	Unmodified	_RAAAIPPIQV_					0	0	0		nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000196498|Q9Y618-5|NCOR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.2655639648438	2	518.319109	1034.62366	1.0367	0.00053732	2.6861	0.0013923	3.7227	0.0019296	518.8242148260091	147.36	0.24844	147.36	147.16	147.41	0					6	4	2	0	0	0	0.026849	1	17230	17230		32.812	11.865	1	11748			47300	8615	39234	39256	50743	50743					0.10773728468188892
RAAALGAPIA	10	Unmodified	_RAAALGAPIA_					0	0	0		ENST00000532946.1_1_11:830599-832843:-|nuORF	ENST00000532946.1_1_11:830599-832843:-|nuORF	ENST00000532946.1_1_11:830599-832843:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	455.77703857421875	2	455.777077	909.5396	0.44756	0.00020399	-0.79005	-0.00036009	-0.34249	-0.0001561	455.77664816232084	39.294	1.4879	36.584	36.31	37.798	-2.7097					84	29	4	0	0	0	0.43592	1	1899	1899		63.306	0	1	978610			47301	13330	39235	39257	50744	50744					0.08121197371258404
RAAAQLPLIL	10	Unmodified	_RAAAQLPLIL_					0	0	0		ENST00000586392.1_1_19:34884680-34890938:+|nuORF	ENST00000586392.1_1_19:34884680-34890938:+|nuORF	ENST00000586392.1_1_19:34884680-34890938:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	533.3404541015625	2	533.342584	1064.67061	-5.4486	-0.002906	1.332	0.00071043	-4.1166	-0.0021955	533.3431726379797	156.49	1.098	155.32	155.02	156.12	-1.1707					66	21	4	0	0	0	0.76627	1	13464	13464		23.042	0	1	385900			47302	14044	39236	39258	50745	50745					0.14086588019335977
RAAARGVNAL	10	Unmodified	_RAAARGVNAL_					0	0	0		ENST00000535678.1_1_2:223725777-223773458:+|nuORF;ENST00000392066.7_1_2:223725777-223773468:+|nuORF;ENST00000357430.7_1_2:223725777-223765478:+|nuORF	ENST00000535678.1_1_2:223725777-223773458:+|nuORF	ENST00000535678.1_1_2:223725777-223773458:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.82183837890625	2	499.796332	997.578111	-0.44555	-0.00022269	4.4715	0.0022349	4.026	0.0020122	499.7983225281126	47.888	0.47928	47.888	47.681	48.16	0					16	10	2	0	0	0	0.026915	1	3512	3512		20.947	0	1	213860			47303	10715	39237	39259	50746	50746					0.07922503005795534
RAAASRNEKV	10	Unmodified	_RAAASRNEKV_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52;ENST00000551023.1_1_12:56648058-56650843:-|nuORF	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.310546875	2	551.309803	1100.60505	-0.37818	-0.00020849	1.9925	0.0010985	1.6143	0.00088997	551.3108232441903	143.73	1.3553	142.28	141.89	143.25	-1.4427					66	25	4	0	0	0	0.65849	1	14087	14087		35.152	0.97948	1	191320			47304	4794	39238	39260	50747	50747					0.058775668263251646
RAAERGTLS	9	Unmodified	_RAAERGTLS_					0	0	0			REV__tr|A0A553SUB3|A0A553SUB3_NIACIZincmetallopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_06600PE=4SV=1	REV__tr|A0A553SUB3|A0A553SUB3_NIACIZincmetallopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_06600PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	480.76446533203125	2	480.764697	959.514842	-0.58902	-0.00028318	0.32965	0.00015849	-0.25936	-0.00012469	480.7647665200637	28.664	0.49841	28.664	28.489	28.987	0					23	9	4	0	0	0	0.35694	1	958	958		56.434	10.462	1	668360	+		47305	31059	39239	39261	50748	50748					0.03346517497914192
RAAERGTLS	9	Unmodified	_RAAERGTLS_					0	0	0			REV__tr|A0A553SUB3|A0A553SUB3_NIACIZincmetallopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_06600PE=4SV=1	REV__tr|A0A553SUB3|A0A553SUB3_NIACIZincmetallopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_06600PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	480.764697	959.514842	-0.58902	-0.00028318	0.32965	0.00015849	-0.25936	-0.00012469	480.7647665200637	28.664	0.49841	28.664	28.489	28.987	0	0	0	NaN	56.434	23	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	668360	+		47306	31059	39239	39261							0.03346517497914192
RAAGAGTRRSL	11	Unmodified	_RAAGAGTRRSL_					0	0	0			REV__ENST00000427497.3_1_17:17131347-17136121:-|nuORF	REV__ENST00000427497.3_1_17:17131347-17136121:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	558.2973022460938	2	558.323245	1114.63194	-0.13355	-7.4563E-05	2.6909	0.0015024	2.5573	0.0014278	558.3247246487851	107.52	0.67702	106.26	106	106.68	-1.267					21	12	2	0	0	0	0.025955	1	7646	7646		30.569	24.256	1	35341	+		47307	25682	39240	39262	50749	50749					0.07920675437503633
RAAGAGTRRSL	11	Unmodified	_RAAGAGTRRSL_					0	0	0			REV__ENST00000427497.3_1_17:17131347-17136121:-|nuORF	REV__ENST00000427497.3_1_17:17131347-17136121:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	558.323245	1114.63194	0.42156	0.00023537	2.5122	0.0014026	2.9337	0.001638	558.3244109898585	106.48	0.69513	106.18	105.98	106.67	-0.30836	-0.12053	-0.00037008	NaN	50.034	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43897	+		47308	25682	39240	39262							0.07920675437503633
RAAKAFLH	8	Unmodified	_RAAKAFLH_					0	0	0		ENST00000435964.1_1_2:175260618-175260879:+|nuORF	ENST00000435964.1_1_2:175260618-175260879:+|nuORF	ENST00000435964.1_1_2:175260618-175260879:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	457.2745056152344	2	457.271961	912.52937	-0.14705	-6.7243E-05	3.29	0.0015044	3.1429	0.0014372	457.273357832587	56.156	0.64932	56.156	55.932	56.581	0					27	15	2	0	0	0	0.65582	1	4643	4643		52.299	7.7681	1	1181300			47309	11871	39241	39263	50750	50750					0.06960634436688906
RAAKDFIL	8	Unmodified	_RAAKDFIL_					0	0	0		GNA14|p.R302K|2|0.19|ENSG00000156049|chr9:77424142-77424142|C/T|missense_variant	GNA14|p.R302K|2|0.19|ENSG00000156049|chr9:77424142-77424142|C/T|missense_variant	GNA14|p.R302K|2|0.19|ENSG00000156049|chr9:77424142-77424142|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.2799072265625	2	467.279452	932.544351	0.4896	0.00022878	-0.74161	-0.00034654	-0.252	-0.00011776	467.27897096327047	98.074	0.70513	95.695	95.418	96.124	-2.3786					45	13	4	0	0	0	0.53531	1	8700	8700		73.975	13.003	1	566800			47310	14343	39242	39264	50751	50751					0.07538081514042005
RAALGGRRGPL	11	Unmodified	_RAALGGRRGPL_					0	0	0		ENST00000282382.8_2_5:114961385-114961538:-|nuORF	ENST00000282382.8_2_5:114961385-114961538:-|nuORF	ENST00000282382.8_2_5:114961385-114961538:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	562.3410034179688	2	562.343981	1122.67341	-2.9015	-0.0016316	1.6805	0.00094503	-1.221	-0.00068662	562.3448419475409	142.33	4.504	141.32	140	144.5	-1.0106					205	90	3	0	0	0	0.68684	2	11774	11774;11901		34.173	6.1195	1	106680			47311	10056	39243	39265	50752;50753	50752					0.11697856196838075
RAALGIVPSPV	11	Unmodified	_RAALGIVPSPV_					0	0	0		ENST00000377658.8_1_1:6651099-6651537:-|nuORF	ENST00000377658.8_1_1:6651099-6651537:-|nuORF	ENST00000377658.8_1_1:6651099-6651537:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3316040039062	2	540.332216	1078.64988	0.34656	0.00018726	-4.1131	-0.0022225	-3.7666	-0.0020352	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.65063	1	13583	13583		40.058	9.7405	1	342200			47312	11089	39244	39266	50754	50754					0.11369997639667417
RAALGTSALP	10	Unmodified	_RAALGTSALP_					0	0	0			REV__ENST00000356575.8_1_1:3407490-3411251:-|nuORF	REV__ENST00000356575.8_1_1:3407490-3411251:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	478.7781066894531	2	478.779816	955.545079	-0.62041	-0.00029704	-0.49203	-0.00023558	-1.1124	-0.00053261	478.77933923625665	74.056	2.9189	72.085	71.378	74.297	-1.9711					156	55	6	0	0	0	0.24425	4	6006	6006;6022;6028;6051		87.696	2.5356	1	2474400	+		47313	24764	39245	39267	50755;50756;50757;50758	50755					0.0655287616308442
RAALLPLLL	9	Unmodified	_RAALLPLLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	OvCa9_classI_Rep2	2	490.336181640625	2	490.33677	978.658987	0.31976	0.00015679	-1.1553	-0.00056648	-0.83553	-0.00040969	490.3362879264998	135.18	3.9777	134.96	134.64	138.62	-0.22697					225	81	5	0	0	0	0.52083	3	13437	13437;13576;13734		40.573	0	1	7114000			47314	6630	39246	39268	50759;50760;50761	50759					0.16880390996004735
RAALLPLLL	9	Unmodified	_RAALLPLLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	OvCa9_classI_Rep3	3	490.3363342285156	2	490.33677	978.658987	-1.5535	-0.00076172	0.74111	0.00036339	-0.81236	-0.00039833	490.33716888209767	136.71	4.5569	135.62	135.22	139.77	-1.0858					270	92	5	0	0	0	0.65476	1	11298	11298		25.45	0	1	5555400			47315	6630	39246	39268	50762	50762					0.16880390996004735
RAALLPLLL	9	Unmodified	_RAALLPLLL_					0	0	0		ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	ENSG00000166033|ENST00000368984|HTRA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.3376770019531	2	490.33677	978.658987	2.3125	0.0011339	-3.376	-0.0016554	-1.0635	-0.00052147	490.335203673426	137.13	5.8682	135.59	135.18	141.05	-1.5437					314	118	5	0	0	0	0.61208	1	13568	13568		30.504	0	1	8417000			47316	6630	39246	39268	50763	50763					0.16880390996004735
RAALPLLL	8	Unmodified	_RAALPLLL_					0	0	0			REV__nc|ENSG00000091436|Q9NYL2-2|MAP3K20	REV__nc|ENSG00000091436|Q9NYL2-2|MAP3K20	MULTI-MSMS	OvCa9_classI_Rep2	2	433.79498291015625	2	433.794738	865.574923	0.58254	0.0002527	-0.42547	-0.00018457	0.15707	6.8137E-05	433.7944359498501	111.98	2.1215	111.84	111.47	113.59	-0.13961					92	42	4	0	0	0	0.69415	1	10621	10621		44.531	0	1	565240	+		47317	28757	39247	39269	50764	50764					0.13675859899092302
RAALPLLL	8	Unmodified	_RAALPLLL_					0	0	0			REV__nc|ENSG00000091436|Q9NYL2-2|MAP3K20	REV__nc|ENSG00000091436|Q9NYL2-2|MAP3K20	MULTI-MSMS	OvCa9_classI_Rep4_	4	433.7943420410156	2	433.794738	865.574923	1.1641	0.000505	-1.5519	-0.00067321	-0.38776	-0.00016821	433.79394637933103	113.56	1.8167	112.11	111.75	113.57	-1.4461					87	35	4	0	0	0	0.64377	1	10557	10557		54.765	0	1	638440	+		47318	28757	39247	39269	50765	50765					0.13675859899092302
RAALRALRL	9	Unmodified	_RAALRALRL_					0	0	0		nc|ENSG00000117385|Q32P28-4|P3H1;ENSG00000117385|ENST00000296388|P3H1;nc|ENSG00000117385|Q32P28-3|P3H1;ENST00000492956.1_1_1:43227954-43232675:-|nuORF;nc|ENSG00000117385|Q32P28-2|P3H1;ENST00000495874.5_1_1:43222117-43232675:-|nuORF;ENST00000460031.5_1_1:43220834-43232642:-|nuORF	nc|ENSG00000117385|Q32P28-4|P3H1	nc|ENSG00000117385|Q32P28-4|P3H1	MULTI-MSMS	OvCa9_classI_Rep3	3	520.34765625	2	520.345992	1038.67743	0.45282	0.00023562	1.8105	0.00094209	2.2633	0.0011777	520.346854726536	130.58	2.2687	129.46	129.13	131.39	-1.1166					144	45	5	0	0	0	0.36502	1	10451	10451		55.504	0	1	1601100			47319	3251	39248	39270	50766	50766					0.15963945690555192
RAANRAGRGK	10	Unmodified	_RAANRAGRGK_					0	0	0		ENST00000445877.5_1_9:86595660-86614660:+|nuORF	ENST00000445877.5_1_9:86595660-86614660:+|nuORF	ENST00000445877.5_1_9:86595660-86614660:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.80810546875	2	528.810305	1055.60606	-1.3853	-0.00073257	-3.1113	-0.0016453	-4.4966	-0.0023778	528.8085032032806	144.49	1.3563	143.05	142.58	143.94	-1.4357					48	25	3	0	0	0	0.62299	1	14183	14183		39.253	0.44669	1	88342			47320	11984	39249	39271	50767	50767					0.08047825985886448
RAAPFSLEY	9	Unmodified	_RAAPFSLEY_					0	0	0		ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	MULTI-MSMS	OvCa9_classI_Rep2	2	527.2720336914062	2	527.271824	1052.5291	-0.24152	-0.00012735	1.6991	0.00089589	1.4576	0.00076854	527.2716092813203	96.009	1.1906	94.981	94.565	95.756	-1.0281					66	23	5	0	0	0	0.37135	1	8651	8651		54.776	15.97	1	482700			47321	7889	39250	39272	50768	50768					0.004931699261760514
RAAPFSLEY	9	Unmodified	_RAAPFSLEY_					0	0	0		ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	ENSG00000180817|ENST00000373232|PPA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.272216796875	2	527.271824	1052.5291	0.077422	4.0822E-05	0.41349	0.00021802	0.49092	0.00025885	527.2714560231624	97.529	1.6228	95.15	94.808	96.431	-2.3786					55	29	2	0	0	0	0.28934	2	8638	8638;8651		64.207	10.856	1	622050			47322	7889	39250	39272	50769;50770	50769					0.004931699261760514
RAAPLLLAR	9	Unmodified	_RAAPLLLAR_					0	0	0		ENST00000493235.5_1_3:132036276-132056343:+|nuORF;nc|ENSG00000014257|P15309-3|ACP3;ENSG00000014257|ENST00000336375|ACP3;nc|ENSG00000014257|P15309-2|ACP3	ENST00000493235.5_1_3:132036276-132056343:+|nuORF	ENST00000493235.5_1_3:132036276-132056343:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	490.82330322265625	2	490.821818	979.629084	2.373	0.0011647	-0.14409	-7.072E-05	2.2289	0.001094	490.8215857626917	75.77	0.75749	75.77	75.523	76.28	0					42	18	4	0	0	0	0.29717	1	7548	7548		63.306	3.0123	1	3944100			47323	998	39251	39273	50771	50771					0.1384545205065706
RAAPRLSRLP	10	Unmodified	_RAAPRLSRLP_					0	0	0		ENST00000558679.1_1_15:50546296-50557931:-|nuORF	ENST00000558679.1_1_15:50546296-50557931:-|nuORF	ENST00000558679.1_1_15:50546296-50557931:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	568.8541259765625	2	568.854181	1135.69381	-5.375	-0.0030576	4.3783	0.0024906	-0.99679	-0.00056703	568.8565433281535	160.72	1.3933	160.5	160.18	161.57	-0.22696					89	27	5	0	0	0	0.72319	1	16383	16383		27.882	8.7787	1	747650			47324	13703	39252	39274	50772	50772					0.13139026856629243
RAAPSADH	8	Unmodified	_RAAPSADH_					0	0	0			REV__nc|ENSG00000179111|Q9BYE0|HES7	REV__nc|ENSG00000179111|Q9BYE0|HES7	MULTI-MSMS	OvCa99_classI_Rep5	1	412.70391845703125	2	412.704109	823.393664	0.74792	0.00030867	-2.1599	-0.00089141	-1.412	-0.00058274	412.70357783628623	32.14	6.2924	32.14	31.559	37.851	0					232	132	4	0	0	0	0.59148	1	1519	1519		65.803	2.8247	1	839830	+		47325	22102	39253	39275	50773	50773					-0.025096851447756308
RAARALCYLE	10	Unmodified	_RAARALCYLE_					0	0	0			REV__ENSG00000198841|ENST00000371614|KTI12	REV__ENSG00000198841|ENST00000371614|KTI12	MULTI-SECPEP	OvCa9_classI_Rep2	2	583.8237915039062	2	583.310958	1164.60736	-0.25648	-0.00014961	-2.9171	-0.0017016	-3.1736	-0.0018512	583.3091619245554	106.56	0.79526	106.25	105.83	106.62	-0.30836					17	15	2	0	0	0	0.026802	1	9951	9951		34.173	0	1	21857	+		47326	23076	39254	39276	50774	50774					0.03164279239786083
RAARPRPPS	9	Unmodified	_RAARPRPPS_					0	0	0		ENST00000405785.5_1_7:7606553-7607680:+|nuORF	ENST00000405785.5_1_7:7606553-7607680:+|nuORF	ENST00000405785.5_1_7:7606553-7607680:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	504.2955322265625	2	504.296499	1006.57845	2.4403	0.0012306	-2.6833	-0.0013532	-0.24298	-0.00012254	504.29503035872443	26.545	0.48776	23.835	23.66	24.147	-2.7097					19	13	2	0	0	0	0.68424	1	386	386		21.96	1.4781	1	16913			47327	11473	39255	39277	50775	50775					0.0754192272564751
RAARRALAK	9	Unmodified	_RAARRALAK_					0	0	0		ENSG00000169914|ENST00000375120|OTUD3	ENSG00000169914|ENST00000375120|OTUD3	ENSG00000169914|ENST00000375120|OTUD3	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.7855529785156	2	506.827966	1011.64138	1.6558	0.00083919	-1.8494	-0.00093731	-0.19358	-9.8114E-05	506.8269319636673	28.257	0.61173	25.547	25.294	25.906	-2.7097					15	12	2	0	0	0	0.027462	1	556	556		11.511	0	1	19054			47328	7053	39256	39278	50776	50776					0.1360248851367487
RAASNRAER	9	Unmodified	_RAASNRAER_					0	0	0			REV__ENST00000436673.5_1_7:48129208-48129858:+|nuORF	REV__ENST00000436673.5_1_7:48129208-48129858:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	515.78173828125	2	515.778671	1029.54279	3.8164	0.0019684	2.7814	0.0014346	6.5978	0.003403	515.7800627654972	25.113	0.82449	22.404	22.29	23.115	-2.7097					31	17	2	0	0	0	0.60342	1	215	215		31.53	1.0262	1	167870	+		47329	25785	39257	39279	50777	50777					0.02919840477966318
RAASQKNLVRL	11	Unmodified	_RAASQKNLVRL_					0	0	0		ENSG00000139537|ENST00000320516|CCDC65;nc|ENSG00000139537|Q8IXS2-2|CCDC65	ENSG00000139537|ENST00000320516|CCDC65	ENSG00000139537|ENST00000320516|CCDC65	MULTI-MSMS	OvCa9_classI_Rep3	3	628.3840942382812	2	628.383303	1254.75205	-4.0512	-0.0025457	2.8064	0.0017635	-1.2447	-0.00078217	628.3849132400738	150.53	4.7174	149.58	148	152.71	-0.95647					178	94	2	0	0	0	0.7046	1	12747	12747		28.081	3.5623	1	419100			47330	4781	39258	39280	50778	50778					0.1348666371127365
RAASQKNLVRL	11	Unmodified	_RAASQKNLVRL_					0	0	0		ENSG00000139537|ENST00000320516|CCDC65;nc|ENSG00000139537|Q8IXS2-2|CCDC65	ENSG00000139537|ENST00000320516|CCDC65	ENSG00000139537|ENST00000320516|CCDC65	MSMS	OvCa9_classI_Rep4_	4	628.3824462890625	2	628.383303	1254.75205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	151.25	1	149.81	149.31	150.31	-1.4344								0	0	0	0.19474	1	14946	14946		24.519	0.99649	1				47331	4781	39258	39280	50779	50779					0.1348666371127365
RAASQKNLVRL	11	Unmodified	_RAASQKNLVRL_					0	0	0		ENSG00000139537|ENST00000320516|CCDC65;nc|ENSG00000139537|Q8IXS2-2|CCDC65	ENSG00000139537|ENST00000320516|CCDC65	ENSG00000139537|ENST00000320516|CCDC65	MSMS	OvCa9_classI_Rep4_	4	628.381591796875	2	628.383303	1254.75205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	151.93	1	150.49	149.99	150.99	-1.435								0	0	0	0.19474	1	15023	15023		17.468	0.75062	1				47332	4781	39258	39280	50780	50780					0.1348666371127365
RAATRTAEI	9	Unmodified	_RAATRTAEI_					0	0	0			REV__tr|A0A553SU59|A0A553SU59_NIACIGlycosidehydrolasefamily5domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06280PE=4SV=1	REV__tr|A0A553SU59|A0A553SU59_NIACIGlycosidehydrolasefamily5domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06280PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.7825622558594	2	494.780348	987.546142	-0.19248	-9.5234E-05	3.7758	0.0018682	3.5833	0.001773	494.78217265714096	62.558	1.6035	59.101	58.57	60.174	-3.4577					69	32	4	0	0	0	0.16562	1	4351	4351		82.241	5.4664	1	509620	+		47333	31040	39259	39281	50781	50781					0.051870905319901794
RAAVLASAL	9	Unmodified	_RAAVLASAL_					0	0	0			REV__ENST00000329478.3_1_19:1911901-1912156:+|nuORF	REV__ENST00000329478.3_1_19:1911901-1912156:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	435.7113342285156	2	436.271627	870.528701	0.62212	0.00027141	-1.1013	-0.00048045	-0.47915	-0.00020904	436.27108329959674	47.215	0.3553	47.215	46.938	47.294	0					10	7	2	0	0	0	0.027462	1	3382	3382		31.955	12.595	1	55523	+		47334	24519	39260	39282	50782	50782					0.0882579499698295
RAAVLSGLGLS	11	Unmodified	_RAAVLSGLGLS_					0	0	0		nc|ENSG00000174233|O43306-2|ADCY6;ENSG00000174233|ENST00000357869|ADCY6	nc|ENSG00000174233|O43306-2|ADCY6	nc|ENSG00000174233|O43306-2|ADCY6	MULTI-MSMS	OvCa99_classI_Rep5	1	522.3141479492188	2	522.314023	1042.61349	-0.78468	-0.00040985	-0.28081	-0.00014667	-1.0655	-0.00055652	522.313917291577	29.71	1.5896	29.71	29.486	31.076	0					68	31	5	0	0	0	0.60323	1	1136	1136		44.377	3.599	1	6861900			47335	7450	39261	39283	50783	50783					0.0938912074293512
RAAVPVGMEE	10	Unmodified	_RAAVPVGMEE_					0	0	0			REV__ENST00000585968.5_1_19:36103696-36110661:+|nuORF	REV__ENST00000585968.5_1_19:36103696-36110661:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.7899780273438	2	529.768591	1057.52263	-1.2679	-0.0006717	1.5441	0.00081799	0.27614	0.00014629	530.2698747499917	76.937	0.53413	73.998	73.832	74.366	-2.9389					13	10	2	0	0	0	0.026956	1	6173	6173		26.693	1.1189	1	26187	+		47336	23487	39262	39284	50784	50784					-0.0038309129683966603
RACCWCPGR	9	Unmodified	_RACCWCPGR_					0	0	0			REV__ENST00000495372.1_1_2:242440793-242447450:-|nuORF	REV__ENST00000495372.1_1_2:242440793-242447450:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.7962036132812	2	526.222774	1050.43099	-1.6739	-0.00088086	-0.10351	-5.447E-05	-1.7774	-0.00093533	526.2230063316052	86.182	0.75114	83.961	83.636	84.387	-2.2204					22	14	2	0	0	0	0.027462	1	5082	5082		26.693	11.051	1	25941	+		47337	26745	39263	39285	50785	50785					-0.09220376466669222
RACLHIYAAA	10	Unmodified	_RACLHIYAAA_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.7860107421875	2	544.787118	1087.55968	-6.9442	-0.0037831	2.8766	0.0015671	-4.0677	-0.002216	544.7884367491765	160.62	0.76315	159.01	158.71	159.48	-1.6101					32	15	3	0	0	0	0.61209	1	15854	15854		40.573	1.3198	1	60033	+		47338	22747	39264	39286	50786	50786					0.01940625039560473
RACLHIYAAA	10	Unmodified	_RACLHIYAAA_					0	0	0			REV__ENSG00000188897|ENST00000696174|unknown	REV__ENSG00000188897|ENST00000696174|unknown	MULTI-MATCH	OvCa9_classI_Rep3	3		2	544.787118	1087.55968	-6.9015	-0.0037599	2.556	0.0013925	-4.3455	-0.0023674	544.7883228287507	160.08	0.80275	158.75	158.46	159.26	-1.3316	-0.1278	-0.00018435	NaN	40.573	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42781	+		47339	22747	39264	39286							0.01940625039560473
RACMELDQV	9	Unmodified	_RACMELDQV_					0	0	0			REV__ENST00000604949.1_1_7:12725427-12725565:+|nuORF	REV__ENST00000604949.1_1_7:12725427-12725565:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	532.8090209960938	2	532.746802	1063.47905	-1.6529	-0.00088056	2.9321	0.0015621	1.2793	0.00068152	533.2520730828286	76.658	0.25731	74.804	74.676	74.934	-1.854					5	4	2	0	0	0	0.026813	1	6352	6352		110.12	19.75	1	14750	+		47340	28061	39265	39287	50787	50787					-0.050150240656421374
RACMELDQV	9	Unmodified	_RACMELDQV_					0	0	0			REV__ENST00000604949.1_1_7:12725427-12725565:+|nuORF	REV__ENST00000604949.1_1_7:12725427-12725565:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.8084106445312	2	532.746802	1063.47905	-0.30196	-0.00016087	-0.64309	-0.0003426	-0.94505	-0.00050347	532.7457714679396	76.265	0.93803	73.893	73.62	74.558	-2.3715					40	17	3	0	0	0	0.026439	1	3989	3989		139.97	51.328	1	55336	+		47341	28061	39265	39287	50788	50788					-0.050150240656421374
RACMELDQV	9	Unmodified	_RACMELDQV_					0	0	0			REV__ENST00000604949.1_1_7:12725427-12725565:+|nuORF	REV__ENST00000604949.1_1_7:12725427-12725565:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.809326171875	2	532.746802	1063.47905	-1.3588	-0.00072391	-0.24078	-0.00012827	-1.5996	-0.00085219	532.7461428274781	77.219	0.63115	74.402	74.194	74.825	-2.8165					24	12	3	0	0	0	0.027108	1	6211	6211		104.06	15.414	1	67950	+		47342	28061	39265	39287	50789	50789					-0.050150240656421374
RACMELDQV	9	Unmodified	_RACMELDQV_					0	0	0			REV__ENST00000604949.1_1_7:12725427-12725565:+|nuORF	REV__ENST00000604949.1_1_7:12725427-12725565:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	532.746802	1063.47905	0.41501	0.00022109	-2.1944	-0.0011691	-1.7794	-0.00094799	532.745320012791	73.963	0.38428	73.963	73.792	74.176	0	0.034607	-0.0005379	NaN	139.97	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	878840	+		47343	28061	39265	39287							-0.050150240656421374
RACPLPVRIE	10	Unmodified	_RACPLPVRIE_					0	0	0			REV__ENSG00000035141|ENST00000430566|FAM136A	REV__ENSG00000035141|ENST00000430566|FAM136A	MULTI-MSMS	OvCa99_classI_Rep5	1	577.3252563476562	2	577.32915	1152.64375	1.2199	0.00070426	-0.27429	-0.00015836	0.94556	0.0005459	577.3288770850424	130.08	6.9884	130.08	128.32	135.31	0					388	149	8	0	0	0	0.49558	1	15512	15512		54.776	3.4409	1	7493100	+		47344	16599	39266	39288	50790	50790					0.07353156136491634
RACPWQLL	8	Unmodified	_RACPWQLL_					0	0	0		ENST00000567662.5_1_15:72455885-72456104:-|nuORF	ENST00000567662.5_1_15:72455885-72456104:-|nuORF	ENST00000567662.5_1_15:72455885-72456104:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.69708251953125	2	493.765655	985.516756	0.38607	0.00019063	0.49626	0.00024503	0.88232	0.00043566	493.7656692176185	45.637	0.34552	45.637	45.454	45.8	0					12	7	2	0	0	0	0.028476	1	3160	3160		19.36	0	1	132930			47345	13864	39267	39289	50791	50791					0.0234185498215993
RACWPWRWREW	11	Unmodified	_RACWPWRWREW_					0	0	0		ENST00000589087.5_1_19:2806818-2807876:+|nuORF	ENST00000589087.5_1_19:2806818-2807876:+|nuORF	ENST00000589087.5_1_19:2806818-2807876:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.2987060546875	3	544.598211	1630.7728	-0.65536	-0.00035691	-0.65331	-0.00035579	-1.3087	-0.0007127	544.5978681853255	28.962	0.59853	28.962	28.739	29.337	0					36	11	5	0	0	0	0.026525	1	1033	1033		1.523	0	1	663660			47346	14082	39268	39290	50792	50792					-0.01735069180767823
RADGPGRPP	9	Unmodified	_RADGPGRPP_					0	0	0			REV__ENSG00000109265|ENST00000682029|CRACD	REV__ENSG00000109265|ENST00000682029|CRACD	MULTI-MSMS	OvCa9_classI_Rep4_	4	461.7437438964844	2	461.746308	921.478063	-0.9628	-0.00044457	-2.3391	-0.0010801	-3.3019	-0.0015246	461.74509928976033	117.12	2.1532	115.76	115.46	117.61	-1.3645					88	40	4	0	0	0	0.42676	1	10958	10958		49.442	4.9105	1	521240	+		47347	17926	39269	39291	50793	50793					0.014182656719981424
RADLFRSRL	9	Unmodified	_RADLFRSRL_					0	0	0			REV__nc|ENSG00000167081|P40426-4|PBX3	REV__nc|ENSG00000167081|P40426-4|PBX3	MULTI-MSMS	OvCa9_classI_Rep2	2	567.328857421875	2	567.330539	1132.64652	-2.3399	-0.0013275	0.99796	0.00056617	-1.3419	-0.00076131	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.59259	1	14596	14596		32.812	6.1195	1	241060	+		47348	16271	39270	39292	50794	50794					0.0855074758567298
RADRERKCN	9	Unmodified	_RADRERKCN_					0	0	0			REV__ENSG00000149922|ENST00000395224|TBX6	REV__ENSG00000149922|ENST00000395224|TBX6	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.8367919921875	2	574.291088	1146.56762	1.8785	0.0010788	3.8075	0.0021866	5.686	0.0032654	574.7968234837309	85.661	0.28635	85.661	85.544	85.83	0					8	6	2	0	0	0	0.027441	1	9006	9006		40.778	0	1	251750	+		47349	20178	39271	39293	50795	50795					0.00020152289062025375
RADSPLPHNL	10	Unmodified	_RADSPLPHNL_					0	0	0		ENST00000490239.5_1_9:35616595-35617216:-|nuORF;ENST00000396757.5_1_9:35616223-35617216:-|nuORF	ENST00000490239.5_1_9:35616595-35617216:-|nuORF	ENST00000490239.5_1_9:35616595-35617216:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.298583984375	2	560.298904	1118.58326	1.1055	0.00061942	-3.0605	-0.0017148	-1.955	-0.0010954	560.2968653460988	64.141	1.6464	60.666	59.916	61.562	-3.475					88	33	5	0	0	0	0.30325	1	4546	4546		80.455	11.668	1	821570			47350	11325	39272	39294	50796	50796					0.028707620777367993
RAEADILKDVL	11	Unmodified	_RAEADILKDVL_					0	0	0		tr|A0A7D6VVS9|A0A7D6VVS9_9CLOTYdcFfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01630PE=4SV=1	tr|A0A7D6VVS9|A0A7D6VVS9_9CLOTYdcFfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01630PE=4SV=1	tr|A0A7D6VVS9|A0A7D6VVS9_9CLOTYdcFfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01630PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	621.8635864257812	2	621.856252	1241.69795	1.8085	0.0011246	0.15441	9.6019E-05	1.9629	0.0012206	621.8566966456735	122.17	0.32516	122.17	121.9	122.22	0					10	6	2	0	0	0	0.54737	1	14068	14068		40.058	1.3046	1	208130			47351	35234	39273	39295	50797	50797					0.08677026769032636
RAEIKKFKHV	10	Unmodified	_RAEIKKFKHV_					0	0	0		nc|ENSG00000153789|Q6ZTR7|CIBAR2;ENSG00000153789|ENST00000539556|CIBAR2	nc|ENSG00000153789|Q6ZTR7|CIBAR2	nc|ENSG00000153789|Q6ZTR7|CIBAR2	MSMS	OvCa9_classI_Rep4_	4	628.38232421875	2	628.385314	1254.75608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	150.01	1	148.57	148.07	149.07	-1.4344								0	0	0	0.14375	1	14809	14809		19.104	2.3861	1				47352	5692	39274	39296	50798	50798					0.13888753204946624
RAEKGDLFF	9	Unmodified	_RAEKGDLFF_					0	0	0			REV__ENST00000310137.4_1_11:66394378-66394552:+|nuORF	REV__ENST00000310137.4_1_11:66394378-66394552:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.35791015625	2	541.785099	1081.55564	-1.3243	-0.00071747	-3.7305	-0.0020211	-5.0547	-0.0027386	541.7834412823144	56.826	1.4387	54.022	53.622	55.06	-2.804					36	28	2	0	0	0	0.027462	1	4123	4123		27.882	6.9353	1	63060	+		47353	24336	39275	39297	50799	50799					0.01812858817538654
RAEKGDLFF	9	Unmodified	_RAEKGDLFF_					0	0	0			REV__ENST00000310137.4_1_11:66394378-66394552:+|nuORF	REV__ENST00000310137.4_1_11:66394378-66394552:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	541.785099	1081.55564	-0.59466	-0.00032218	-5.411	-0.0029316	-6.0056	-0.0032538	541.7831434004692	57.403	1.2199	54.058	53.679	54.899	-3.3449	0.017682	-0.0011572	NaN	27.882	45	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	229150	+		47354	24336	39275	39297							0.01812858817538654
RAEKLKER	8	Unmodified	_RAEKLKER_					0	0	0		HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|173|1|anti-sense	HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|173|1|anti-sense	HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|173|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7760009765625	2	515.311815	1028.60908	0.096163	4.9554E-05	0.69137	0.00035627	0.78754	0.00040583	515.3132854623293	71.916	0.37895	71.916	71.707	72.086	0					14	8	3	0	0	0	0.028476	1	7000	7000		19.997	0	1	313290			47355	14452	39276	39298	50800	50800					0.09591656320026232
RAELIVLWP	9	Unmodified	_RAELIVLWP_					0	0	0		ENST00000366558.7_1_1:241695491-241695605:+|nuORF	ENST00000366558.7_1_1:241695491-241695605:+|nuORF	ENST00000366558.7_1_1:241695491-241695605:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.807373046875	2	548.829309	1095.64407	-0.95558	-0.00052445	0.87634	0.00048096	-0.079239	-4.3489E-05	549.3319960109627	69.52	0.38783	66.039	65.861	66.249	-3.4812					12	7	3	0	0	0	0.027462	1	5195	5195		18.324	0	1	18638			47356	10820	39277	39299	50801	50801					0.1000689912798407
RAENGERSDL	10	Unmodified	_RAENGERSDL_					0	0	0		ENSG00000065548|ENST00000337859|ZC3H15	ENSG00000065548|ENST00000337859|ZC3H15	ENSG00000065548|ENST00000337859|ZC3H15	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.3308715820312	2	573.778533	1145.54251	0.85647	0.00049143	0.37466	0.00021497	1.2311	0.0007064	573.7779254112711	83.459	0.34062	83.459	83.204	83.545	0					11	7	2	0	0	0	0.026975	1	8672	8672		38.754	0	1	144480			47357	1331	39278	39300	50802	50802					-0.02443624032525804
RAENLKAQEQR	11	Unmodified	_RAENLKAQEQR_					0	0	0			REV__nc|ENSG00000154310|Q9UKE5-6|TNIK	REV__nc|ENSG00000154310|Q9UKE5-6|TNIK	MULTI-SECPEP	OvCa9_classI_Rep4_	4	448.7881164550781	3	448.24438	1341.71131	0.46314	0.0002076	-0.60428	-0.00027086	-0.14113	-6.3262E-05	448.2442204291389	47.378	0.95691	44.3	44.111	45.068	-3.0785					35	18	3	0	0	0	0.025568	1	2566	2566		33.039	4.4627	1	57399	+		47358	20378	39279	39301	50803	50803					0.054122776009762674
RAEPATAPN	9	Unmodified	_RAEPATAPN_					0	0	0			REV__nc|ENSG00000160058|Q9NW68-2|BSDC1	REV__nc|ENSG00000160058|Q9NW68-2|BSDC1	MULTI-MSMS	OvCa99_classI_Rep5	1	463.7422790527344	2	463.738148	925.461744	2.5997	0.0012056	4.0466	0.0018766	6.6463	0.0030821	463.73992220386816	96.074	0.71597	96.074	95.743	96.459	0					30	16	2	0	0	0	0.37135	1	10502	10502		54.776	6.8607	1	619610	+		47359	20635	39280	39302	50804	50804					-0.003968602847749025
RAEPHAAG	8	Unmodified	_RAEPHAAG_					0	0	0			REV__ENST00000359276.8_1_X:16720981-16730725:-|nuORF	REV__ENST00000359276.8_1_X:16720981-16730725:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	404.7068786621094	2	404.706651	807.39875	1.1299	0.00045728	-2.5876	-0.0010472	-1.4577	-0.00058992	404.70593607710475	43.123	1.7338	43.123	42.839	44.573	0					94	39	4	0	0	0	0.64377	1	2830	2830		54.765	1.4132	1	8967400	+		47360	24812	39281	39303	50805	50805					-0.012653812821554311
RAEPLNLFR	9	Unmodified	_RAEPLNLFR_					0	0	0		ENSG00000148841|ENST00000337478|ITPRIP	ENSG00000148841|ENST00000337478|ITPRIP	ENSG00000148841|ENST00000337478|ITPRIP	MULTI-MSMS	OvCa9_classI_Rep3	3	558.3189086914062	2	558.31964	1114.62473	0.31301	0.00017476	-0.27464	-0.00015334	0.038376	2.1426E-05	558.3193007338663	68.822	1.1001	66.008	65.611	66.711	-2.8143					64	21	4	0	0	0	0.60342	1	3009	3009		31.53	0	1	162330			47361	5428	39282	39304	50806	50806					0.07199942837087292
RAEQSALLLV	10	Unmodified	_RAEQSALLLV_					0	0	0			REV__ENSG00000181963|ENST00000325719|OR52K2	REV__ENSG00000181963|ENST00000325719|OR52K2	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.326904296875	2	550.327131	1098.63971	0.71282	0.00039229	-2.7777	-0.0015287	-2.0649	-0.0011364	550.3256260191897	86.705	1.5914	84.078	83.613	85.204	-2.6269					98	31	4	0	0	0	0.58067	1	7362	7362		44.377	0	1	3279500	+		47362	22255	39283	39305	50807	50807					0.09433389914420331
RAETKIKW	8	Unmodified	_RAETKIKW_					0	0	0			REV__tr|A0A553SLQ6|A0A553SLQ6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_21090PE=4SV=1	REV__tr|A0A553SLQ6|A0A553SLQ6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_21090PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	516.3037109375	2	516.303458	1030.59236	-1.364	-0.00070426	0.62015	0.00032019	-0.7439	-0.00038408	516.3037096883031	61.9	2.366	59.14	58.568	60.934	-2.7593					127	45	4	0	0	0	0.60331	2	4611	4611;4675		63.306	10.557	1	1077700	+		47363	30252	39284	39306	50808;50809	50808					0.07829155434069435
RAETKIKW	8	Unmodified	_RAETKIKW_					0	0	0			REV__tr|A0A553SLQ6|A0A553SLQ6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_21090PE=4SV=1	REV__tr|A0A553SLQ6|A0A553SLQ6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_21090PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.3033447265625	2	516.303458	1030.59236	-0.62044	-0.00032034	-0.28232	-0.00014576	-0.90276	-0.0004661	516.303207209785	62.857	2.0837	59.399	58.962	61.046	-3.4577					108	42	4	0	0	0	0.70469	1	4438	4438		42.396	5.9494	1	1463100	+		47364	30252	39284	39306	50810	50810					0.07829155434069435
RAEVAAVD	8	Unmodified	_RAEVAAVD_					0	0	0		ENST00000510341.1_1_5:180236074-180237330:-|nuORF	ENST00000510341.1_1_5:180236074-180237330:-|nuORF	ENST00000510341.1_1_5:180236074-180237330:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	415.722412109375	2	415.721967	829.429381	1.7526	0.00072857	-1.9593	-0.00081452	-0.20674	-8.5945E-05	415.72103499680065	120.01	1.8058	118.98	118.63	120.43	-1.0271					63	35	3	0	0	0	0.75241	1	9125	9125		25.45	1.2474	1	271890			47365	12970	39285	39307	50811	50811					0.00784352312223291
RAFFYVLQV	9	Unmodified	_RAFFYVLQV_					0	0	0		ENST00000454305.1_1_1:77533610-77544072:+|nuORF	ENST00000454305.1_1_1:77533610-77544072:+|nuORF	ENST00000454305.1_1_1:77533610-77544072:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	571.3425903320312	2	571.821484	1141.62842	-0.84083	-0.00048081	3.4598	0.0019784	2.619	0.0014976	571.8231909871148	40.596	0.83681	37.642	37.368	38.205	-2.9541					25	15	2	0	0	0	0.027462	1	1793	1793		30.504	0	1	95113			47366	12086	39286	39308	50812	50812					0.0632661261092835
RAFHDLPSPA	10	Unmodified	_RAFHDLPSPA_					0	0	0		ENST00000433206.6_1_17:37075690-37076056:+|nuORF	ENST00000433206.6_1_17:37075690-37076056:+|nuORF	ENST00000433206.6_1_17:37075690-37076056:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.825439453125	2	555.788173	1109.56179	0.19008	0.00010564	-1.4318	-0.00079576	-1.2417	-0.00069011	556.2890633304305	101.91	0.46791	99.707	99.522	99.99	-2.1994					15	8	2	0	0	0	0.027021	1	9186	9186		21.96	5.4867	1	18006			47367	11825	39287	39309	50813	50813					0.011393770490485622
RAFIPPAPVL	10	Unmodified	_RAFIPPAPVL_					0	0	0		ENST00000509697.1_1_4:1164106-1164795:-|nuORF;ENSG00000159674|ENST00000290902|SPON2	ENST00000509697.1_1_4:1164106-1164795:-|nuORF	ENST00000509697.1_1_4:1164106-1164795:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	540.8314819335938	2	540.831852	1079.64915	-0.46856	-0.00025341	-0.3626	-0.0001961	-0.83116	-0.00044952	540.8317360682152	123.45	3.5017	123.21	122.89	126.4	-0.23193					177	70	5	0	0	0	0.56767	1	12003	12003		45.952	5.3793	1	7794400			47368	6023	39288	39310	50814	50814					0.11251202990615639
RAFKTQVGR	9	Unmodified	_RAFKTQVGR_					0	0	0		ENST00000549268.1_1_12:62768286-62777812:+|nuORF;nc|ENSG00000135655|Q9Y4E8-2|USP15;nc|ENSG00000135655|Q9Y4E8-3|USP15;ENSG00000135655|ENST00000280377|USP15	ENST00000549268.1_1_12:62768286-62777812:+|nuORF	ENST00000549268.1_1_12:62768286-62777812:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.7775268554688	2	531.811982	1061.60941	1.2844	0.00068307	-1.6105	-0.0008565	-0.32611	-0.00017343	532.312644797165	143.84	0.14809	143.84	143.71	143.86	0					4	2	2	0	0	0	0.027462	1	16799	16799		9.7057	6.5464	1	18607			47369	4397	39289	39311	50815	50815					0.08107076039891581
RAFLELKL	8	Unmodified	_RAFLELKL_					0	0	0		ENST00000199764.6_1_19:42259386-42260556:+|nuORF	ENST00000199764.6_1_19:42259386-42260556:+|nuORF	ENST00000199764.6_1_19:42259386-42260556:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	495.3120422363281	2	495.310752	988.606951	-0.91672	-0.00045406	0.07799	3.8629E-05	-0.83873	-0.00041543	495.31070869088654	64.274	1.1788	64.274	64.011	65.19	0					75	28	4	0	0	0	0.25402	1	5824	5824		115.46	0	1	9875500			47370	9646	39290	39312	50816	50816					0.11219227582216718
RAFLSWAVS	9	Unmodified	_RAFLSWAVS_					0	0	0		ENST00000489702.6_2_7:128588792-128589140:+|nuORF	ENST00000489702.6_2_7:128588792-128589140:+|nuORF	ENST00000489702.6_2_7:128588792-128589140:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.8308715820312	2	518.782359	1035.55016	-0.25413	-0.00013184	2.3677	0.0012283	2.1135	0.0010965	519.2851337903425	62.675	0.35651	62.675	62.46	62.816	0					13	8	2	0	0	0	0.027462	1	5580	5580		15.642	0	1	395940			47371	12680	39291	39313	50817	50817					0.033811800256899005
RAFNQWLD	8	Unmodified	_RAFNQWLD_					0	0	0			REV__TCEANC|p.F210Gfs*24|1|0.05|ENSG00000176896|chrX:13663135-13663136|-/GGGGA|frameshift_variant	REV__TCEANC|p.F210Gfs*24|1|0.05|ENSG00000176896|chrX:13663135-13663136|-/GGGGA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.784912109375	2	525.261791	1048.50903	-0.658	-0.00034562	1.4891	0.00078218	0.83112	0.00043655	525.260974838006	105.6	0.29694	103.58	103.45	103.74	-2.0161					6	5	2	0	0	0	0.028476	1	9594	9594		45.952	1.8352	1	4355.6	+		47372	21975	39292	39314	50818	50818					-0.013285810137858789
RAFRDLKTVI	10	Unmodified	_RAFRDLKTVI_					0	0	0			REV__tr|A0A553SQW0|A0A553SQW0_NIACIRecombinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07420PE=3SV=1	REV__tr|A0A553SQW0|A0A553SQW0_NIACIRecombinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07420PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	406.7179260253906	3	406.915423	1217.72444	0.63526	0.0002585	-0.37036	-0.00015071	0.2649	0.00010779	406.91508081338515	52.949	0.85157	49.741	49.451	50.303	-3.208					23	16	2	0	0	0	0.026739	1	3172	3172		37.508	3.5865	1	37699	+		47373	30667	39293	39315	50819	50819					0.1242876045103003
RAFSFRKK	8	Unmodified	_RAFSFRKK_					0	0	0			REV__chr2:28799299-28800139|88|22.3|0.0|21.09|+|1|SPDYA,None|1	REV__chr2:28799299-28800139|88|22.3|0.0|21.09|+|1|SPDYA,None|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.3201293945312	2	520.311618	1038.60868	-0.093758	-4.8784E-05	3.0043	0.0015631	2.9105	0.0015144	520.312431725583	105.37	1.0947	104.93	104.5	105.6	-0.43642					38	21	3	0	0	0	0.028476	1	9813	9813		58.782	0	1	35463	+		47374	16001	39294	39316	50820	50820					0.09092281390849166
RAFTKNII	8	Unmodified	_RAFTKNII_					0	0	0		nc|ENSG00000185585|Q68BL7-3|OLFML2A;nc|ENSG00000185585|Q68BL7-2|OLFML2A;ENSG00000185585|ENST00000373580|OLFML2A	nc|ENSG00000185585|Q68BL7-3|OLFML2A	nc|ENSG00000185585|Q68BL7-3|OLFML2A	MULTI-MSMS	OvCa99_classI_Rep5	1	481.7939758300781	2	481.792727	961.5709	1.4571	0.00070202	0.24184	0.00011652	1.6989	0.00081854	481.7926294157943	74.693	0.56848	74.693	74.478	75.046	0					28	13	3	0	0	0	0.66057	1	7405	7405		51.335	3.4199	1	936550			47375	8263	39295	39317	50821	50821					0.08857770405370502
RAFWLAPS	8	Unmodified	_RAFWLAPS_					0	0	0			REV__nc|ENSG00000180739|Q9H228-2|S1PR5	REV__nc|ENSG00000180739|Q9H228-2|S1PR5	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.7790222167969	2	474.25852	946.502486	-0.91421	-0.00043357	0.30906	0.00014657	-0.60515	-0.000287	474.25844759283035	34.592	0.84808	34.592	34.398	35.246	0					24	17	2	0	0	0	0.028476	1	1675	1675		25.45	0	1	27229	+		47376	22189	39296	39318	50822	50822					0.027095258255144472
RAFYEEVI	8	Unmodified	_RAFYEEVI_					0	0	0			REV__UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	REV__UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.3302001953125	2	513.766374	1025.5182	1.2047	0.00061893	2.2103	0.0011356	3.415	0.0017545	513.7672777112703	67.301	1.103	64.414	64.086	65.189	-2.8873					33	21	2	0	0	0	0.028476	1	2885	2885		24.203	0	1	17003	+		47377	18816	39297	39319	50823	50823					0.0064576755189591495
RAGAELRAVL	10	Unmodified	_RAGAELRAVL_					0	0	0		ENSG00000176435|ENST00000342213|CLEC14A	ENSG00000176435|ENST00000342213|CLEC14A	ENSG00000176435|ENST00000342213|CLEC14A	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.3206787109375	2	528.31964	1054.62473	-0.5989	-0.00031641	0.23835	0.00012593	-0.36054	-0.00019048	528.3196947884122	56.923	1.3748	53.578	53.222	54.596	-3.3449					88	26	4	0	0	0	0.73378	1	3673	3673		26.693	3.1702	1	903090			47378	7608	39298	39320	50824	50824					0.09959942837076596
RAGARPVLLSP	11	Unmodified	_RAGARPVLLSP_					0	0	0		ENST00000482974.1_1_3:50617415-50617661:+|nuORF;ENST00000448997.5_1_3:50617415-50617845:+|nuORF	ENST00000482974.1_1_3:50617415-50617661:+|nuORF	ENST00000482974.1_1_3:50617415-50617661:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	568.8458862304688	2	568.848564	1135.68258	0.54685	0.00031108	-4.2377	-0.0024106	-3.6909	-0.0020995	568.8459810585302	123.26	2.2433	121.89	120.96	123.2	-1.3666					118	44	3	0	0	0	0.69808	1	11707	11707		30.318	1.1682	1	383340			47379	12023	39299	39321	50825	50825					0.12016204762517191
RAGGQNPI	8	Unmodified	_RAGGQNPI_					0	0	0			REV__L1PB1_dup5905|chr7:93807211-93809400:+|8.337698263303487|0.2056128638309657|5.34|416.0|2|1|sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|8.337698263303487|0.2056128638309657|5.34|416.0|2|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.9314270019531	2	406.722301	811.43005	-0.1049	-4.2667E-05	0.14645	5.9565E-05	0.041546	1.6898E-05	406.7221770552072	43.887	0.52053	43.887	43.694	44.215	0					17	11	2	0	0	0	0.028476	1	2930	2930		28.254	5.2118	1	259230	+		47380	28594	39300	39322	50826	50826					0.016791917519299204
RAGGVEVEPGG	11	Unmodified	_RAGGVEVEPGG_					0	0	0		nc|ENSG00000066230|P48764-2|SLC9A3;ENSG00000066230|ENST00000264938|SLC9A3	nc|ENSG00000066230|P48764-2|SLC9A3	nc|ENSG00000066230|P48764-2|SLC9A3	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.7957153320312	2	514.261988	1026.50942	-0.74608	-0.00038368	0.29641	0.00015243	-0.44967	-0.00023125	514.262268678414	37.804	0.81727	37.804	37.531	38.348	0					30	17	3	0	0	0	0.025746	1	2070	2070		49.536	5.4192	1	62327			47381	1346	39301	39323	50827	50827					-0.0027720608457002527
RAGGVEVEPGG	11	Unmodified	_RAGGVEVEPGG_					0	0	0		nc|ENSG00000066230|P48764-2|SLC9A3;ENSG00000066230|ENST00000264938|SLC9A3	nc|ENSG00000066230|P48764-2|SLC9A3	nc|ENSG00000066230|P48764-2|SLC9A3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	514.261988	1026.50942	-1.041	-0.00053534	-0.21298	-0.00010953	-1.254	-0.00064487	514.2619348842233	41.029	0.46942	38.075	37.945	38.414	-2.9541	0.13549	-0.00022101	NaN	49.536	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18352			47382	1346	39301	39323							-0.0027720608457002527
RAGKLNLVD	9	Unmodified	_RAGKLNLVD_					0	0	0		ENSG00000117245|ENST00000400463|KIF17;nc|ENSG00000117245|Q9P2E2|KIF17;KIF17|p.K764Tfs*27|1|0.06|ENSG00000117245|chr1:20682825-20682826|-/G|frameshift_variant	ENSG00000117245|ENST00000400463|KIF17	ENSG00000117245|ENST00000400463|KIF17	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.3170166015625	2	493.293091	984.571629	-0.42582	-0.00021005	3.5903	0.001771	3.1644	0.001561	493.294952302016	99.423	0.36292	97.098	97.003	97.366	-2.3253					11	6	2	0	0	0	0.027462	1	8877	8877		35.618	11.416	1	53027			47383	3245	39302	39324	50828	50828					0.07872565054412917
RAGLFQRSPG	10	Unmodified	_RAGLFQRSPG_					0	0	0		ENSG00000127533|ENST00000248076|F2RL3	ENSG00000127533|ENST00000248076|F2RL3	ENSG00000127533|ENST00000248076|F2RL3	MULTI-MSMS	OvCa99_classI_Rep5	1	544.804931640625	2	544.801614	1087.58868	-0.47229	-0.00025731	2.9589	0.001612	2.4866	0.0013547	544.8029727828776	54.352	0.5855	54.352	54.089	54.675	0					37	13	3	0	0	0	0.28422	1	4370	4370		82.75	7.7072	1	5755600			47384	3839	39303	39325	50829	50829					0.04838485660229708
RAGLLALMLH	10	Unmodified	_RAGLLALMLH_					0	0	0		ENST00000587170.1_1_18:47808965-47809781:-|nuORF;ENST00000587342.1_1_18:47808965-47809814:-|nuORF;ENST00000590901.5_1_18:47808965-47812340:-|nuORF;ENSG00000154832|ENST00000285106|CXXC1;nc|ENSG00000154832|Q9P0U4-2|CXXC1	ENST00000587170.1_1_18:47808965-47809781:-|nuORF	ENST00000587170.1_1_18:47808965-47809781:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	547.8270263671875	2	547.828786	1093.64302	-6.0458	-0.003312	1.7537	0.00096071	-4.2921	-0.0023513	547.8295905768617	154.78	1.79	153.77	152.92	154.71	-1.0076					93	40	3	0	0	0	0.76627	1	13299	13299		23.042	2.5607	1	69775			47385	5757	39304	39326	50830	50830					0.0999436148742916
RAGLLPALF	9	Unmodified	_RAGLLPALF_					0	0	0		ENSG00000164404|ENST00000687138|GDF9	ENSG00000164404|ENST00000687138|GDF9	ENSG00000164404|ENST00000687138|GDF9	MULTI-MSMS	OvCa9_classI_Rep2	2	479.2974548339844	2	479.297645	956.580737	-0.75064	-0.00035978	0.51879	0.00024865	-0.23185	-0.00011113	479.29773010897736	115.4	1.335	115.29	115	116.33	-0.11777					67	26	3	0	0	0	0.53957	1	10991	10991		38.806	1.647	1	535680			47386	6454	39305	39327	50831	50831					0.10070958410756248
RAGPALKGHR	10	Unmodified	_RAGPALKGHR_					0	0	0		ENST00000567696.1_1_16:777422-777680:+|nuORF;ENST00000569143.1_1_16:777422-777998:+|nuORF;ENST00000561750.1_1_16:777422-778482:+|nuORF	ENST00000567696.1_1_16:777422-777680:+|nuORF	ENST00000567696.1_1_16:777422-777680:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8165893554688	2	531.817599	1061.62064	-1.6193	-0.00086116	0.29076	0.00015463	-1.3285	-0.00070653	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.74374	1	11448	11448		25.574	0	1	178650			47387	13759	39306	39328	50832	50832					0.09229898134026371
RAGPALLK	8	Unmodified	_RAGPALLK_					0	0	0		ENSG00000132004|ENST00000393261|FBXW9	ENSG00000132004|ENST00000393261|FBXW9	ENSG00000132004|ENST00000393261|FBXW9	MULTI-MSMS	OvCa99_classI_Rep5	1	413.26885986328125	2	413.268887	824.523222	-0.11957	-4.9414E-05	0.16025	6.6227E-05	0.040683	1.6813E-05	413.26881722086773	34.328	0.9007	34.328	33.824	34.725	0					40	18	3	0	0	0	0.68714	1	1646	1646		45.952	7.1458	1	536940			47388	4105	39307	39329	50833	50833					0.10394116205179671
RAGPCLPTPQ	10	Unmodified	_RAGPCLPTPQ_					0	0	0		ENST00000568683.5_1_16:88764346-88764736:-|nuORF	ENST00000568683.5_1_16:88764346-88764736:-|nuORF	ENST00000568683.5_1_16:88764346-88764736:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.287353515625	2	520.271301	1038.52805	-1.1997	-0.00062416	-3.8337	-0.0019946	-5.0334	-0.0026187	520.2692360028237	92.91	1.566	90.403	90.061	91.627	-2.5072					79	32	4	0	0	0	0.026994	1	8071	8071		32.812	0	1	1227500			47389	13870	39308	39330	50834	50834					0.010326322856144543
RAGPLRRG	8	Unmodified	_RAGPLRRG_					0	0	0		ENST00000367029.4_1_1:209848883-209849382:+|nuORF	ENST00000367029.4_1_1:209848883-209849382:+|nuORF	ENST00000367029.4_1_1:209848883-209849382:+|nuORF	MSMS	OvCa9_classI_Rep2	2	441.76953125	2	441.77266	881.530767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	162.78	1	162.55	162.05	163.05	-0.22696								0	0	0	0.30129	1	16589	16589		25.45	0	1				47390	10831	39309	39331	50835	50835					0.08526268525474734
RAGRITISYGK	11	Unmodified	_RAGRITISYGK_					0	0	0		tr|A0A553SLR0|A0A553SLR0_NIACIPHPdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21095PE=4SV=1	tr|A0A553SLR0|A0A553SLR0_NIACIPHPdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21095PE=4SV=1	tr|A0A553SLR0|A0A553SLR0_NIACIPHPdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21095PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	611.356201171875	2	611.356754	1220.69895	-3.1571	-0.0019301	2.0725	0.001267	-1.0847	-0.00066312	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.71789	1	12689	12689		23.523	2.5758	1	666990			47391	33754	39310	39332	50836	50836					0.09743285928584555
RAGSHPRRAR	10	Unmodified	_RAGSHPRRAR_					0	0	0			REV__ENST00000360561.7_1_10:123923067-123923412:+|nuORF	REV__ENST00000360561.7_1_10:123923067-123923412:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	582.3358764648438	2	582.334479	1162.6544	-1.5689	-0.00091364	3.711	0.002161	2.1421	0.0012474	582.3365687772591	34.022	0.79026	31.312	31.119	31.91	-2.7097					30	15	3	0	0	0	0.58067	1	1266	1266		44.377	1.5129	1	92132	+		47392	24832	39311	39333	50837	50837					0.07958319625799959
RAGSIVLKV	9	Unmodified	_RAGSIVLKV_					0	0	0		ENSG00000162704|ENST00000359856|ARPC5;nc|ENSG00000162704|O15511-2|ARPC5;ENST00000462965.1_1_1:183596669-183602348:-|nuORF;ENST00000602490.1_1_1:183599580-183599799:-|nuORF	ENSG00000162704|ENST00000359856|ARPC5	ENSG00000162704|ENST00000359856|ARPC5	MULTI-MSMS	OvCa9_classI_Rep2	2	471.8081970214844	2	471.808377	941.6022	-0.71288	-0.00033634	0.595	0.00028073	-0.11787	-5.5613E-05	471.8085684718405	67.366	1.6796	64.705	64.347	66.027	-2.661					77	33	3	0	0	0	0.44248	1	5268	5268		47.96	1.9873	1	422510			47393	6217	39312	39334	50838	50838					0.12906343439476586
RAGYGFTQKI	10	Unmodified	_RAGYGFTQKI_					0	0	0			REV__ENST00000556369.1_3_14:77935388-77935589:+|nuORF	REV__ENST00000556369.1_3_14:77935388-77935589:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.77783203125	2	570.811648	1139.60874	-0.2565	-0.00014641	0.29693	0.00016949	0.040439	2.3083E-05	570.8114862002132	62.025	0.33898	62.025	61.826	62.165	0					17	7	3	0	0	0	0.026679	1	5496	5496		71.877	0	1	297720	+		47394	17432	39313	39335	50839	50839					0.04452236600195647
RAHECCTEDF	10	Carbamidomethyl (C)	_RAHECC(Carbamidomethyl (C))TEDF_	RAHEC(0.006)C(0.994)TEDF		RAHEC(-22)C(22)TEDF		0	1	0			REV__ENSG00000183128|ENST00000369783|CALHM3	REV__ENSG00000183128|ENST00000369783|CALHM3	MULTI-MSMS	OvCa99_classI_Rep5	1	634.2467651367188	2	634.245154	1266.47576	0.72395	0.00045916	-3.1961	-0.0020271	-2.4722	-0.001568	634.2429455060187	162.41	0.30113	162.41	162.18	162.48	0					13	5	3	0	0	0	0.55359	1	19045	19045		47.657	22.083	2	54308	+		47395	22343	39314	39336	50840	50840	257				-0.14682318910308823
RAHHRKLLHP	10	Unmodified	_RAHHRKLLHP_					0	0	0			REV__ENSG00000125531|ENST00000370097|FNDC11	REV__ENSG00000125531|ENST00000370097|FNDC11	MULTI-SECPEP	OvCa99_classI_Rep5	1	421.9194030761719	3	422.254773	1263.74249	-0.33238	-0.00014035	-1.9806	-0.00083632	-2.313	-0.00097667	422.25370404684924	37.868	1.0943	37.868	37.391	38.486	0					42	23	4	0	0	0	0.026915	1	2114	2114		20.03	0	1	249840	+		47396	18731	39315	39337	50841	50841					0.12116940216401417
RAHLSTKIEED	11	Unmodified	_RAHLSTKIEED_					0	0	0		tr|A0A553SG58|A0A553SG58_NIACIRegulatoryproteinRecXOS=NialliacirculansOX=1397GN=recXPE=3SV=1	tr|A0A553SG58|A0A553SG58_NIACIRegulatoryproteinRecXOS=NialliacirculansOX=1397GN=recXPE=3SV=1	tr|A0A553SG58|A0A553SG58_NIACIRegulatoryproteinRecXOS=NialliacirculansOX=1397GN=recXPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	432.75048828125	3	433.561486	1297.66263	-0.24907	-0.00010799	0.98551	0.00042728	0.73644	0.00031929	433.561832584596	39.911	0.39505	39.911	39.711	40.106	0					14	8	2	0	0	0	0.025995	1	2358	2358		23.378	0	1	157750			47397	33121	39316	39338	50842	50842					0.025703642412281624
RAHRNLII	8	Unmodified	_RAHRNLII_					0	0	0			REV__ENST00000579368.1_1_18:8707103-8707376:-|nuORF	REV__ENST00000579368.1_1_18:8707103-8707376:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.7630920410156	2	496.809242	991.603932	-0.2705	-0.00013439	-3.159	-0.0015694	-3.4295	-0.0017038	496.80962623875644	70.535	0.43359	70.535	70.328	70.761	0					21	10	3	0	0	0	0.028476	1	6773	6773		14.664	0	1	268290	+		47398	27813	39317	39339	50843	50843					0.10779397248074929
RAHRRGSH	8	Unmodified	_RAHRRGSH_					0	0	0		nc|ENSG00000145103|Q86SU0-5|ILDR1;nc|ENSG00000145103|Q86SU0-2|ILDR1;nc|ENSG00000145103|Q86SU0-6|ILDR1;ENSG00000145103|ENST00000344209|ILDR1	nc|ENSG00000145103|Q86SU0-5|ILDR1	nc|ENSG00000145103|Q86SU0-5|ILDR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.26092529296875	2	488.76844	975.522327	0.22291	0.00010895	-1.7018	-0.00083177	-1.4788	-0.00072281	488.76932802390684	67.294	0.39252	67.294	67.055	67.448	0					11	9	2	0	0	0	0.028476	1	6253	6253		13.775	0	1	263700			47399	5203	39318	39340	50844	50844					0.033587146088507325
RAIAPARGT	9	Unmodified	_RAIAPARGT_					0	0	0		ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	ENSG00000278803|ENST00000458091|PWWP4	MULTI-MSMS	OvCa9_classI_Rep2	2	456.77264404296875	2	456.772326	911.530098	0.41062	0.00018756	-0.36008	-0.00016447	0.050549	2.309E-05	456.7720882264302	137.84	1.2382	137.61	136.84	138.08	-0.22696					44	25	2	0	0	0	0.69123	1	13705	13705		20.947	0.4651	1	20083			47400	9593	39319	39341	50845	50845					0.07079429085752054
RAIDFSPYL	9	Unmodified	_RAIDFSPYL_					0	0	0		nc|ENSG00000172216|P17676-2|CEBPB;ENSG00000172216|ENST00000303004|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	MULTI-MSMS	OvCa99_classI_Rep5	1	541.2887573242188	2	541.287474	1080.5604	1.4144	0.00076561	0.10532	5.7008E-05	1.5197	0.00082262	541.2874697357297	111.86	1.1412	111.86	111.51	112.66	0					70	24	5	0	0	0	0.070405	1	12730	12730		107.01	42.8	1	4827800			47401	7276	39320	39342	50846	50846					0.023337429602634074
RAIDFSPYL	9	Unmodified	_RAIDFSPYL_					0	0	0		nc|ENSG00000172216|P17676-2|CEBPB;ENSG00000172216|ENST00000303004|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	MULTI-MSMS	OvCa9_classI_Rep2	2	541.2880859375	2	541.287474	1080.5604	0.010824	5.8586E-06	-0.56194	-0.00030417	-0.55112	-0.00029831	541.2870379758257	112.53	1.2334	112.41	112.08	113.31	-0.12174					54	24	3	0	0	0	0.21231	1	10656	10656		74.255	7.8258	1	212460			47402	7276	39320	39342	50847	50847					0.023337429602634074
RAIDFSPYL	9	Unmodified	_RAIDFSPYL_					0	0	0		nc|ENSG00000172216|P17676-2|CEBPB;ENSG00000172216|ENST00000303004|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.28759765625	2	541.287474	1080.5604	-0.12122	-6.5614E-05	0.11238	6.0831E-05	-0.0088353	-4.7824E-06	541.2873462584946	113.73	1.4114	112.29	112	113.41	-1.4461					60	27	4	0	0	0	0.37135	1	10558	10558		54.776	7.119	1	252680			47403	7276	39320	39342	50848	50848					0.023337429602634074
RAIDFSPYL	9	Unmodified	_RAIDFSPYL_					0	0	0		nc|ENSG00000172216|P17676-2|CEBPB;ENSG00000172216|ENST00000303004|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	MULTI-MATCH	OvCa99_classI_Rep5	1		2	541.287474	1080.5604	1.9404	0.0010503	2.2497	0.0012177	4.19	0.002268	541.7903965891115	112.78	0.44865	112.78	112.52	112.97	0	0.34673	0.0032009	NaN	74.255	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	303070			47404	7276	39320	39342							0.023337429602634074
RAIDFSPYL	9	Unmodified	_RAIDFSPYL_					0	0	0		nc|ENSG00000172216|P17676-2|CEBPB;ENSG00000172216|ENST00000303004|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	nc|ENSG00000172216|P17676-2|CEBPB	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	541.287474	1080.5604	1.4085	0.00076238	-1.4639	-0.00079238	-0.055416	-2.9996E-05	541.2865232608585	113.35	1.4765	112.27	112.01	113.48	-1.0753	-0.16541	-0.00081926	NaN	74.255	64	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257830			47405	7276	39320	39342							0.023337429602634074
RAIFISLKV	9	Unmodified	_RAIFISLKV_					0	0	0			REV__ENST00000560933.5_1_22:39487593-39488026:+|nuORF	REV__ENST00000560933.5_1_22:39487593-39488026:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	523.8406372070312	2	523.839677	1045.6648	-0.6268	-0.00032835	0.17947	9.4014E-05	-0.44733	-0.00023433	523.8396857548527	102.58	3.3388	101.05	100.63	103.97	-1.5211					147	63	4	0	0	0	0.27001	1	7088	7088		66.429	0.6261	1	1024800	+		47406	27626	39321	39343	50849	50849					0.14379489507678045
RAIFRAESH	9	Unmodified	_RAIFRAESH_					0	0	0			REV__LIG1|p.T614Ifs*112|1|0.04|ENSG00000105486|chr19:48128003-48128004|-/GGAGGCGGAGGTTGCAGTGAGCTGAGATC|frameshift_variant	REV__LIG1|p.T614Ifs*112|1|0.04|ENSG00000105486|chr19:48128003-48128004|-/GGAGGCGGAGGTTGCAGTGAGCTGAGATC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.3262939453125	2	543.793789	1085.57303	-1.3578	-0.00073835	-4.1849	-0.0022757	-5.5427	-0.0030141	544.2912493370708	65.815	0.29372	62.33	62.179	62.472	-3.4854					8	5	2	0	0	0	0.027461	1	4766	4766		25.574	0	1	31050	+		47407	17729	39322	39344	50850	50850					0.03366199143169979
RAIIRPEKV	9	Unmodified	_RAIIRPEKV_					0	0	0		tr|A0A7D7AEI5|A0A7D7AEI5_9CLOTP-IIfamilynitrogenregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02675PE=4SV=1	tr|A0A7D7AEI5|A0A7D7AEI5_9CLOTP-IIfamilynitrogenregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02675PE=4SV=1	tr|A0A7D7AEI5|A0A7D7AEI5_9CLOTP-IIfamilynitrogenregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02675PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.3469848632812	2	541.345658	1080.67676	-1.5145	-0.00081988	1.2112	0.00065567	-0.30334	-0.00016421	541.3461893077629	92.512	1.558	89.97	89.466	91.024	-2.5425					85	30	4	0	0	0	0.3076	1	8044	8044		62.107	14.45	1	450690			47408	36247	39323	39345	50851	50851					0.139651062508392
RAIIRPEKV	9	Unmodified	_RAIIRPEKV_					0	0	0		tr|A0A7D7AEI5|A0A7D7AEI5_9CLOTP-IIfamilynitrogenregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02675PE=4SV=1	tr|A0A7D7AEI5|A0A7D7AEI5_9CLOTP-IIfamilynitrogenregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02675PE=4SV=1	tr|A0A7D7AEI5|A0A7D7AEI5_9CLOTP-IIfamilynitrogenregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02675PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	541.345658	1080.67676	-0.66281	-0.00035881	-0.53366	-0.00028889	-1.1965	-0.0006477	541.3451931337061	91.991	2.2336	89.967	89.382	91.616	-2.0241	-0.0013237	-0.001309	NaN	62.107	99	45	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	608350			47409	36247	39323	39345							0.139651062508392
RAIIVMVFVF	10	Unmodified	_RAIIVMVFVF_					0	0	0			REV__tr|A0A7D6VTT5|A0A7D6VTT5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03870PE=4SV=1	REV__tr|A0A7D6VTT5|A0A7D6VTT5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03870PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8563842773438	2	597.857012	1193.69947	-2.7036	-0.0016164	1.5554	0.0009299	-1.1482	-0.00068647	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.68695	1	12593	12593		31.955	0.32059	1	591030	+		47410	31628	39324	39346	50852	50852					0.11036989324088609
RAIKQNKEV	9	Unmodified	_RAIKQNKEV_					0	0	0			REV__tr|A0A7D6VQJ5|A0A7D6VQJ5_9CLOTDNA-directedRNApolymerasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=rpoBPE=3SV=1	REV__tr|A0A7D6VQJ5|A0A7D6VQJ5_9CLOTDNA-directedRNApolymerasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=rpoBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.8093872070312	2	543.324922	1084.63529	0.077146	4.1916E-05	2.6064	0.0014161	2.6836	0.001458	543.3259927979625	114.37	1.0448	112.97	112.63	113.67	-1.3977					40	19	4	0	0	0	0.027279	1	10677	10677		71.296	7.0884	1	105850	+		47411	31331	39325	39347	50853	50853					0.09635925491511443
RAIKWLGLI	9	Unmodified	_RAIKWLGLI_					0	0	0			REV__nc|ENSG00000214595|Q6ZMW3-2|EML6	REV__nc|ENSG00000214595|Q6ZMW3-2|EML6	MULTI-SECPEP	OvCa9_classI_Rep2	2	535.8131103515625	2	535.347669	1068.68079	-0.1628	-8.7155E-05	-2.3236	-0.0012439	-2.4864	-0.0013311	535.3463819368402	130.89	0.99432	130.66	130.4	131.4	-0.22696					29	19	2	0	0	0	0.027462	1	12967	12967		18.324	0	1	41771	+		47412	29130	39326	39348	50854	50854					0.149191957445737
RAILAHRNL	9	Unmodified	_RAILAHRNL_					0	0	0		chr12:57827590-57828202|95|31.48|0.8|5.29|-|0|TE_info:AluSp,AluSp_dup33324,Alu,SINE,donor,+,57828202,57828439|CTDSP2,None|1	chr12:57827590-57828202|95|31.48|0.8|5.29|-|0|TE_info:AluSp,AluSp_dup33324,Alu,SINE,donor,+,57828202,57828439|CTDSP2,None|1	chr12:57827590-57828202|95|31.48|0.8|5.29|-|0|TE_info:AluSp,AluSp_dup33324,Alu,SINE,donor,+,57828202,57828439|CTDSP2,None|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.8428955078125	2	532.327799	1062.64105	-2.9986	-0.0015963	-4.4081	-0.0023465	-7.4067	-0.0039428	532.3251683561931	88.455	1.4461	85.852	85.327	86.773	-2.6027					64	28	3	0	0	0	0.027462	1	7527	7527		23.042	0	1	119430			47413	326	39327	39349	50855	50855					0.11223068793856328
RAILKDAPI	9	Unmodified	_RAILKDAPI_					0	0	0		tr|A0A553SHR0|A0A553SHR0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13420PE=4SV=1	tr|A0A553SHR0|A0A553SHR0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13420PE=4SV=1	tr|A0A553SHR0|A0A553SHR0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13420PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.81500244140625	2	498.813659	995.612765	-1.804	-0.00089985	1.1667	0.00058198	-0.63725	-0.00031787	498.81412167064707	108.42	2.0013	106.69	106.42	108.42	-1.7256					88	38	3	0	0	0	0.38529	1	9960	9960		53.351	2.016	1	538280			47414	33299	39328	39350	50856	50856					0.114783260938907
RAILKPRKV	9	Unmodified	_RAILKPRKV_					0	0	0		ENSG00000156475|ENST00000394411|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B	ENSG00000156475|ENST00000394411|PPP2R2B	ENSG00000156475|ENST00000394411|PPP2R2B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.7736206054688	2	540.871843	1079.72913	-1.7576	-0.00095063	1.2341	0.00066747	-0.52352	-0.00028316	540.8722785811167	43.464	1.031	40.457	39.958	40.989	-3.0074					24	19	2	0	0	0	0.027462	1	2051	2051		11.511	4.7755	1	20924			47415	5842	39329	39351	50857	50857					0.19245689384456455
RAILKPRKV	9	Unmodified	_RAILKPRKV_					0	0	0		ENSG00000156475|ENST00000394411|PPP2R2B;nc|ENSG00000156475|Q00005-4|PPP2R2B;nc|ENSG00000156475|Q00005-5|PPP2R2B;nc|ENSG00000156475|Q00005-7|PPP2R2B;nc|ENSG00000156475|Q00005-6|PPP2R2B;nc|ENSG00000156475|Q00005-2|PPP2R2B;nc|ENSG00000156475|Q00005-3|PPP2R2B	ENSG00000156475|ENST00000394411|PPP2R2B	ENSG00000156475|ENST00000394411|PPP2R2B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	540.871843	1079.72913	-0.012726	-6.8829E-06	-0.32224	-0.00017429	-0.33497	-0.00018118	540.8715133094834	43.263	0.69332	40.553	40.262	40.955	-2.7097	0.048176	-0.00068428	NaN	11.511	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20832			47416	5842	39329	39351							0.19245689384456455
RAILMALRL	9	Unmodified	_RAILMALRL_					0	0	0		ENSG00000241945|ENST00000291576|PWP2	ENSG00000241945|ENST00000291576|PWP2	ENSG00000241945|ENST00000291576|PWP2	MULTI-MSMS	OvCa99_classI_Rep5	1	528.8407592773438	2	528.839154	1055.66375	0.98663	0.00052177	1.1721	0.00061988	2.1588	0.0011416	528.8396483981905	101.33	2.283	101.33	101.02	103.3	0					129	53	4	0	0	0	0.079296	2	11254	11254;11284		102.77	19.481	1	9632600			47417	9358	39330	39352	50858;50859	50858					0.13814951867084346
RAILQLEKL	9	Unmodified	_RAILQLEKL_					0	0	0		tr|A0A553SUH0|A0A553SUH0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_07005PE=3SV=1	tr|A0A553SUH0|A0A553SUH0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_07005PE=3SV=1	tr|A0A553SUH0|A0A553SUH0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_07005PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	542.3486328125	2	542.347866	1082.68118	1.8425	0.00099927	0.15214	8.2515E-05	1.9946	0.0010818	542.3478304472866	102.16	0.63802	102.16	101.87	102.5	0					34	14	3	0	0	0	0.3076	1	11382	11382		62.107	0	1	1095000			47418	34608	39331	39353	50860	50860					0.14314570673764138
RAIPPPPPVR	10	Unmodified	_RAIPPPPPVR_					0	0	0			REV__nc|ENSG00000092199|P07910-3|HNRNPC	REV__nc|ENSG00000092199|P07910-3|HNRNPC	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.3417358398438	2	550.340375	1098.6662	-0.87544	-0.00048179	0.94318	0.00051907	0.067742	3.7281E-05	550.3406053783162	99.595	1.436	97.27	96.847	98.283	-2.3253					65	27	4	0	0	0	0.53885	1	8904	8904		49.442	1.5259	1	212450	+		47419	17264	39332	39354	50861	50861					0.12081123596408361
RAIPPPPPVR	10	Unmodified	_RAIPPPPPVR_					0	0	0			REV__nc|ENSG00000092199|P07910-3|HNRNPC	REV__nc|ENSG00000092199|P07910-3|HNRNPC	MULTI-MATCH	OvCa9_classI_Rep3	3		2	550.340375	1098.6662	-0.65373	-0.00035977	0.81328	0.00044758	0.15955	8.7809E-05	550.3405578180957	98.898	1.2921	97.213	96.904	98.196	-1.685	-0.028565	-7.9705E-05	NaN	49.442	56	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269050	+		47420	17264	39332	39354							0.12081123596408361
RAIPPPPPVR	10	Unmodified	_RAIPPPPPVR_					0	0	0			REV__nc|ENSG00000092199|P07910-3|HNRNPC	REV__nc|ENSG00000092199|P07910-3|HNRNPC	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	550.340375	1098.6662	-0.87544	-0.00048179	0.94318	0.00051907	0.067742	3.7281E-05	550.3406053783162	99.595	1.436	97.27	96.847	98.283	-2.3253	0.028565	6.3266E-05	NaN	49.442	65	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	212450	+		47421	17264	39332	39354							0.12081123596408361
RAISEQWRF	9	Unmodified	_RAISEQWRF_					0	0	0		ENST00000445877.5_1_9:86595660-86614660:+|nuORF;ENST00000325875.7_1_9:86595761-86614663:+|nuORF	ENST00000445877.5_1_9:86595660-86614660:+|nuORF	ENST00000445877.5_1_9:86595660-86614660:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	596.81640625	2	596.814722	1191.61489	-1.5015	-0.00089611	4.1537	0.002479	2.6523	0.0015829	596.8171161474286	55.17	1.9389	52.356	51.772	53.711	-2.8139					100	38	4	0	0	0	0.46356	2	3853	3853;3865		45.972	10.82	1	332760			47422	11984	39333	39355	50862;50863	50862					0.02674754831696191
RAISLGILVT	10	Unmodified	_RAISLGILVT_					0	0	0		tr|A0A7D7AC80|A0A7D7AC80_9CLOTBeta-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18145PE=3SV=1	tr|A0A7D7AC80|A0A7D7AC80_9CLOTBeta-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18145PE=3SV=1	tr|A0A7D7AC80|A0A7D7AC80_9CLOTBeta-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18145PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.2958984375	2	521.834591	1041.65463	1.2097	0.00063126	0.54724	0.00028557	1.7569	0.00091683	521.8346910140535	74.723	0.40916	74.723	74.596	75.005	0					13	9	2	0	0	0	0.027118	1	7393	7393		19.104	0	1	108230			47423	36223	39334	39356	50864	50864					0.13546881782417586
RAITNLLVN	9	Unmodified	_RAITNLLVN_					0	0	0		tr|A0A7D6VXQ0|A0A7D6VXQ0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12825PE=4SV=1	tr|A0A7D6VXQ0|A0A7D6VXQ0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12825PE=4SV=1	tr|A0A7D6VXQ0|A0A7D6VXQ0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12825PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	507.3100891113281	2	507.308741	1012.60293	-1.3666	-0.00069327	0.48708	0.0002471	-0.87948	-0.00044617	507.3089195195193	64.071	1.1839	64.071	63.732	64.916	0					65	28	4	0	0	0	0.2422	1	5790	5790		69.628	0.8408	1	10324000			47424	35295	39335	39357	50865	50865					0.0971313808852301
RAITPAQHKK	10	Unmodified	_RAITPAQHKK_					0	0	0			REV__ENSG00000175283|ENST00000372586|DOLK	REV__ENSG00000175283|ENST00000372586|DOLK	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.3453369140625	2	575.346189	1148.67783	-5.0623	-0.0029126	3.5523	0.0020438	-1.51	-0.00086875	575.3482262989531	155.36	0.8739	153.87	153.58	154.45	-1.4911					58	23	3	0	0	0	0.74374	1	15419	15419		25.574	1.3713	1	87893	+		47425	21888	39336	39358	50866	50866					0.10943320619730912
RAITVKVPNN	10	Unmodified	_RAITVKVPNN_					0	0	0		nc|ENSG00000008710|P98161-2|PKD1;nc|ENSG00000008710|P98161-3|PKD1;ENSG00000008710|ENST00000262304|PKD1;ENST00000471603.6_1_16:2152958-2153681:-|nuORF;ENST00000480227.5_1_16:2149506-2153780:-|nuORF;ENST00000483731.5_1_16:2153201-2162466:-|nuORF	nc|ENSG00000008710|P98161-2|PKD1	nc|ENSG00000008710|P98161-2|PKD1	MULTI-MSMS	OvCa9_classI_Rep3	3	556.3331909179688	2	556.332747	1110.65094	0.19549	0.00010876	-0.020928	-1.1643E-05	0.17456	9.7113E-05	556.3324974852751	69.386	1.1434	66.572	66.261	67.405	-2.8143					67	22	4	0	0	0	0.58067	1	3080	3080		44.377	0	1	473980			47426	924	39337	39359	50867	50867					0.10004212008561808
RAIVPILL	8	Unmodified	_RAIVPILL_					0	0	0		ENSG00000136854|ENST00000373299|STXBP1;nc|ENSG00000136854|P61764-2|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	ENSG00000136854|ENST00000373299|STXBP1	MULTI-MSMS	OvCa9_classI_Rep3	3	447.8105773925781	2	447.810388	893.606223	-0.79419	-0.00035565	0.81846	0.00036651	0.024267	1.0867E-05	447.81065895250003	135.86	1.2301	134.75	134.51	135.74	-1.1076					31	24	2	0	0	0	0.72922	1	11034	11034		37.028	0	1	45906			47427	4523	39338	39360	50868	50868					0.15516432933191027
RAIYFMYT	8	Unmodified	_RAIYFMYT_					0	0	0			REV__ENSG00000119457|ENST00000374228|SLC46A2	REV__ENSG00000119457|ENST00000374228|SLC46A2	MULTI-MSMS	OvCa9_classI_Rep2	2	532.7621459960938	2	532.76532	1063.51609	-0.45972	-0.00024492	-3.6293	-0.0019336	-4.089	-0.0021785	532.7632052598339	112.88	3.504	112.76	111.98	115.49	-0.12174					139	70	3	0	0	0	0.73626	1	10687	10687		33.516	0.70317	1	216680	+		47428	18444	39339	39361	50869	50869					-0.013129844575587413
RAKESVNKL	9	Unmodified	_RAKESVNKL_					0	0	0		tr|A0A7D7A020|A0A7D7A020_9CLOTAminoacidpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08585PE=4SV=1	tr|A0A7D7A020|A0A7D7A020_9CLOTAminoacidpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08585PE=4SV=1	tr|A0A7D7A020|A0A7D7A020_9CLOTAminoacidpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08585PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	522.3080444335938	2	522.811648	1043.60874	0.099514	5.2027E-05	-1.6087	-0.00084105	-1.5092	-0.00078903	522.8106775096007	45.569	1.0391	45.569	45.159	46.198	0					47	16	4	0	0	0	0.12515	1	3143	3143		90.37	16.115	1	3138000			47429	35983	39340	39362	50870	50870					0.08868236600187629
RAKGASDVKL	10	Unmodified	_RAKGASDVKL_					0	0	0			REV__ENST00000535022.1_1_12:127630221-127630377:-|nuORF	REV__ENST00000535022.1_1_12:127630221-127630377:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	522.8106689453125	2	522.811648	1043.60874	0.099514	5.2027E-05	-1.6087	-0.00084105	-1.5092	-0.00078903	522.8106775096007	45.569	1.0391	45.569	45.159	46.198	0					47	16	4	0	0	0	0.36605	1	3163	3163		72.879	1.0018	1	3138000	+		47430	27282	39341	39363	50871	50871					0.08868236600187629
RAKGGRRRK	9	Unmodified	_RAKGGRRRK_					0	0	0		ENSG00000146250|ENST00000369700|PRSS35	ENSG00000146250|ENST00000369700|PRSS35	ENSG00000146250|ENST00000369700|PRSS35	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.851318359375	2	542.849765	1083.68498	0.19137	0.00010389	2.3729	0.0012881	2.5642	0.001392	542.8508997812937	34.107	1.1485	31.319	31.051	32.2	-2.7881					51	22	3	0	0	0	0.63422	1	974	974		27.882	1.1893	1	181430			47431	5279	39342	39364	50872	50872					0.14648098010820831
RAKGGRRRK	9	Unmodified	_RAKGGRRRK_					0	0	0		ENSG00000146250|ENST00000369700|PRSS35	ENSG00000146250|ENST00000369700|PRSS35	ENSG00000146250|ENST00000369700|PRSS35	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.849765	1083.68498	-2.073	-0.0011253	4.4136	0.0023959	2.3407	0.0012706	542.8519611295254	34.365	1.1873	31.655	31.316	32.503	-2.7097	0.16803	0.0015157	NaN	27.882	45	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29255			47432	5279	39342	39364							0.14648098010820831
RAKISKTVI	9	Unmodified	_RAKISKTVI_					0	0	0		tr|A0A7D7A0N4|A0A7D7A0N4_9CLOTDNApolymeraseIIIPolC-typeOS=ClostridiumintestinaleOX=36845GN=polCPE=3SV=1	tr|A0A7D7A0N4|A0A7D7A0N4_9CLOTDNApolymeraseIIIPolC-typeOS=ClostridiumintestinaleOX=36845GN=polCPE=3SV=1	tr|A0A7D7A0N4|A0A7D7A0N4_9CLOTDNApolymeraseIIIPolC-typeOS=ClostridiumintestinaleOX=36845GN=polCPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.291748046875	2	508.334759	1014.65496	-0.39055	-0.00019853	-0.059025	-3.0004E-05	-0.44958	-0.00022854	508.33460235868677	38.862	0.61997	38.862	38.531	39.151	0					26	13	3	0	0	0	0.027462	1	2256	2256		34.173	7.3764	1	358100			47433	36001	39343	39365	50873	50873					0.1482230150226087
RAKLHTVAI	9	Unmodified	_RAKLHTVAI_					0	0	0			REV__ENSG00000151014|ENST00000280614|NOCT	REV__ENSG00000151014|ENST00000280614|NOCT	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.29376220703125	2	504.819276	1007.624	-1.5756	-0.00079539	3.1907	0.0016107	1.6151	0.00081534	504.81977451386234	72.316	1.1153	68.901	68.215	69.33	-3.4154					39	22	3	0	0	0	0.027462	1	5483	5483		17.365	0.89182	1	81437	+		47434	20212	39344	39366	50874	50874					0.12049148188032177
RAKNKKPK	8	Unmodified	_RAKNKKPK_					0	0	0		AFF1-UBR5|1|fusion;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	AFF1-UBR5|1|fusion	AFF1-UBR5|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.2932434082031	2	485.319443	968.624333	-0.0046541	-2.2587E-06	2.284	0.0011084	2.2793	0.0011062	485.3203566355537	105.5	1.3535	104.15	103.83	105.19	-1.3482					61	25	4	0	0	0	0.028476	1	7478	7478		19.36	7.1531	1	237790			47435	45	39345	39367	50875	50875					0.13876567907891513
RAKNKKPK	8	Unmodified	_RAKNKKPK_					0	0	0		AFF1-UBR5|1|fusion;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	AFF1-UBR5|1|fusion	AFF1-UBR5|1|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	485.319443	968.624333	-0.48143	-0.00023365	3.0338	0.0014724	2.5524	0.0012387	485.3208073083023	104.72	1.3377	104.14	103.87	105.21	-0.57639	0.0049377	0.0001183	NaN	19.36	62	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213800			47436	45	39345	39367							0.13876567907891513
RAKPLSILK	9	Unmodified	_RAKPLSILK_					0	0	0			REV__NAALADL2|p.S393L|1|0.22|ENSG00000177694|chr3:175447316-175447316|C/T|missense_variant	REV__NAALADL2|p.S393L|1|0.22|ENSG00000177694|chr3:175447316-175447316|C/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.8154296875	2	513.345126	1024.6757	-0.43381	-0.00022269	-0.15433	-7.9223E-05	-0.58813	-0.00030192	513.3450098623492	74.353	0.68143	72.382	72.114	72.796	-1.9711					19	12	2	0	0	0	0.027453	1	6130	6130		45.972	14.442	1	22439	+		47437	28695	39346	39368	50876	50876					0.16434891881931435
RAKPLSILK	9	Unmodified	_RAKPLSILK_					0	0	0			REV__NAALADL2|p.S393L|1|0.22|ENSG00000177694|chr3:175447316-175447316|C/T|missense_variant	REV__NAALADL2|p.S393L|1|0.22|ENSG00000177694|chr3:175447316-175447316|C/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.8162231445312	2	513.345126	1024.6757	-0.1563	-8.0236E-05	-0.37818	-0.00019414	-0.53448	-0.00027437	513.3447877377811	74.758	0.87735	72.347	71.944	72.822	-2.4106					31	17	2	0	0	0	0.027455	1	3768	3768		42.396	23.293	1	36034	+		47438	28695	39346	39368	50877	50877					0.16434891881931435
RAKPLSILK	9	Unmodified	_RAKPLSILK_					0	0	0			REV__NAALADL2|p.S393L|1|0.22|ENSG00000177694|chr3:175447316-175447316|C/T|missense_variant	REV__NAALADL2|p.S393L|1|0.22|ENSG00000177694|chr3:175447316-175447316|C/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.815673828125	2	513.345126	1024.6757	-0.26164	-0.00013431	2.7608	0.0014172	2.4991	0.0012829	513.3456356799	75.332	0.19832	72.921	72.822	73.02	-2.4106					7	3	3	0	0	0	0.027462	1	3804	3804		31.53	0	1	6705.9	+		47439	28695	39346	39368	50878	50878					0.16434891881931435
RAKPRDLLI	9	Unmodified	_RAKPRDLLI_					0	0	0			REV__nc|ENSG00000089022|Q8IW41|MAPKAPK5	REV__nc|ENSG00000089022|Q8IW41|MAPKAPK5	MULTI-MSMS	OvCa9_classI_Rep2	2	541.345458984375	2	541.345658	1080.67676	-0.18719	-0.00010134	-1.1969	-0.00064794	-1.3841	-0.00074928	541.345222203672	81.441	1.5457	79.792	79.415	80.961	-1.6485					147	29	7	0	0	0	0.38529	1	6959	6959		53.351	2.016	1	3232100	+		47440	17193	39347	39369	50879	50879					0.139651062508392
RAKQVFSSL	9	Unmodified	_RAKQVFSSL_					0	0	0			REV__nc|ENSG00000272391|A8CG34|POM121C	REV__nc|ENSG00000272391|A8CG34|POM121C	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.3112182617188	2	518.300916	1034.58728	0.15982	8.2836E-05	1.9698	0.0010209	2.1296	0.0011038	518.3016633670549	31.752	0.89003	29.042	28.789	29.679	-2.7097					23	17	2	0	0	0	0.027462	1	1045	1045		38.806	14.287	1	11868	+		47441	29190	39348	39370	50880	50880					0.07136851571476654
RAKRTTGGAD	10	Unmodified	_RAKRTTGGAD_					0	0	0		ENST00000539421.1_1_17:6014204-6021415:+|nuORF	ENST00000539421.1_1_17:6014204-6021415:+|nuORF	ENST00000539421.1_1_17:6014204-6021415:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.3170776367188	2	516.780879	1031.5472	-0.088339	-4.5652E-05	1.0535	0.00054444	0.96519	0.00049879	516.7813906484555	75.518	0.77405	72.58	72.401	73.175	-2.9389					24	15	2	0	0	0	0.026782	1	5938	5938		37.812	2.6108	1	79999			47442	13437	39349	39371	50881	50881					0.03269304900913994
RAKSAEAGI	9	Unmodified	_RAKSAEAGI_					0	0	0		ENSG00000067248|ENST00000251636|DHX29;DHX29|p.G1201Dfs*33|1|0.04|ENSG00000067248|chr5:55262856-55262857|-/GTAAT|frameshift_variant;ENST00000504778.5_1_5:54579003-54603452:-|nuORF;ENST00000508346.1_1_5:54593218-54603359:-|nuORF	ENSG00000067248|ENST00000251636|DHX29	ENSG00000067248|ENST00000251636|DHX29	MULTI-MSMS	OvCa99_classI_Rep5	1	451.75665283203125	2	451.756341	901.498129	-0.098805	-4.4636E-05	-0.066592	-3.0083E-05	-0.1654	-7.4719E-05	451.75617895745734	29.447	0.59867	29.447	29.186	29.785	0					30	11	4	0	0	0	0.44568	1	1042	1042		47.657	3.5405	1	707370			47443	1373	39350	39372	50882	50882					0.043440166119466994
RAKSGPSR	8	Unmodified	_RAKSGPSR_					0	0	0			REV__PLEKHN1|p.D497*|1|0.11|ENSG00000187583|chr1:973533-973534|-/C|frameshift_variant	REV__PLEKHN1|p.D497*|1|0.11|ENSG00000187583|chr1:973533-973534|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	429.7491455078125	2	429.74885	857.483148	-0.34003	-0.00014613	1.2941	0.00055612	0.95404	0.00041	429.7491781580128	31.562	0.84	28.853	28.69	29.53	-2.7097					29	16	3	0	0	0	0.73626	1	978	978		33.516	0	1	69904	+		47444	22649	39351	39373	50883	50883					0.04870569534614333
RAKSPSQLL	9	Unmodified	_RAKSPSQLL_					0	0	0			REV__ENST00000593682.1_1_19:12691467-12691548:-|nuORF	REV__ENST00000593682.1_1_19:12691467-12691548:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.790771484375	2	500.300916	998.587279	-1.8331	-0.00091708	1.0543	0.00052747	-0.77875	-0.00038961	500.30093249015584	48.96	0.52476	45.844	45.596	46.121	-3.116					30	9	4	0	0	0	0.027462	1	2716	2716		30.504	0	1	273190	+		47445	27966	39352	39374	50884	50884					0.08792851571479332
RAKSPSQLL	9	Unmodified	_RAKSPSQLL_					0	0	0			REV__ENST00000593682.1_1_19:12691467-12691548:-|nuORF	REV__ENST00000593682.1_1_19:12691467-12691548:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	500.300916	998.587279	-1.1825	-0.00059161	0.41483	0.00020754	-0.76768	-0.00038407	500.30088160322657	48.614	0.44961	45.854	45.629	46.078	-2.7603	0.0047895	-0.00019976	NaN	23.042	23	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86068	+		47446	27966	39352	39374							0.08792851571479332
RAKTLPSIR	9	Unmodified	_RAKTLPSIR_					0	0	0		ENST00000507167.1_1_4:99407804-99579377:-|nuORF	ENST00000507167.1_1_4:99407804-99579377:-|nuORF	ENST00000507167.1_1_4:99407804-99579377:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	521.3312377929688	2	521.330008	1040.64546	-0.33901	-0.00017674	0.10111	5.2713E-05	-0.2379	-0.00012403	521.3299646538899	62.402	1.1352	62.402	62.122	63.257	0					50	27	3	0	0	0	0.42676	1	5575	5575		49.442	5.3247	1	6829400			47447	12922	39353	39375	50885	50885					0.12676533216745156
RAKWLGAVA	9	Unmodified	_RAKWLGAVA_					0	0	0		ENST00000527286.5_1_11:111789765-111796920:+|nuORF	ENST00000527286.5_1_11:111789765-111796920:+|nuORF	ENST00000527286.5_1_11:111789765-111796920:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.2918395996094	2	486.292894	970.571235	-0.28705	-0.00013959	-3.915	-0.0019038	-4.202	-0.0020434	486.29057557018166	46.777	2.2575	43.705	42.666	44.923	-3.0724					123	43	5	0	0	0	0.52083	1	2523	2523		40.573	2.7611	1	2684900			47448	13231	39354	39376	50886	50886					0.08477190125222478
RAKWPAIIR	9	Unmodified	_RAKWPAIIR_					0	0	0		nc|ENSG00000188994|O60281-2|ZNF292;ENSG00000188994|ENST00000369577|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	nc|ENSG00000188994|O60281-2|ZNF292	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.8123779296875	2	555.848368	1109.68218	2.1359	0.0011872	0.13747	7.6411E-05	2.2734	0.0012636	555.8482905566788	83.847	0.50614	83.847	83.671	84.177	0					26	11	3	0	0	0	0.027462	1	8743	8743		21.96	0	1	655860			47449	8525	39355	39377	50887	50887					0.13172829833297328
RALAALPIL	9	Unmodified	_RALAALPIL_					0	0	0		ENST00000347404.9_1_12:88974054-88974564:-|nuORF	ENST00000347404.9_1_12:88974054-88974564:-|nuORF	ENST00000347404.9_1_12:88974054-88974564:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	469.3127746582031	2	469.313295	936.612037	-0.19784	-9.2849E-05	0.13468	6.3207E-05	-0.063161	-2.9642E-05	469.31321334770007	121.04	0.91049	119.69	119.39	120.31	-1.3479					40	17	3	0	0	0	0.61208	1	11405	11405		30.504	5.0535	1	100360			47450	10630	39356	39378	50888	50888					0.14119531444839595
RALAILWAL	9	Unmodified	_RALAILWAL_					0	0	0		ENST00000495794.5_1_5:881851-881974:-|nuORF	ENST00000495794.5_1_5:881851-881974:-|nuORF	ENST00000495794.5_1_5:881851-881974:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.826171875	2	513.826569	1025.63859	-0.13471	-6.9219E-05	-4.3864	-0.0022539	-4.5212	-0.0023231	513.8242062495449	78.535	2.5849	75.719	75.312	77.897	-2.8165					120	53	6	0	0	0	0.46377	1	6337	6337		45.952	6.6991	1	1277200			47451	12780	39357	39379	50889	50889					0.12679220336167418
RALAKLLPL	9	Unmodified	_RALAKLLPL_					0	0	0		chr19:51019142-51020068|391|14.94|0.6|4.63|-|ENST00000599077|KLK10,KLK10;ENSG00000129451|ENST00000358789|KLK10	chr19:51019142-51020068|391|14.94|0.6|4.63|-|ENST00000599077|KLK10,KLK10	chr19:51019142-51020068|391|14.94|0.6|4.63|-|ENST00000599077|KLK10,KLK10	MULTI-MSMS	OvCa9_classI_Rep2	2	497.8419189453125	2	497.84222	993.669886	-0.34559	-0.00017205	0.051364	2.5571E-05	-0.29423	-0.00014648	497.842072677608	98.037	1.7281	97.144	96.776	98.504	-0.89305					86	34	4	0	0	0	0.36502	4	8887	8887;8893;8899;8917		55.504	9.5523	1	252320			47452	423	39358	39380	50890;50891;50892;50893	50890					0.17279793370266816
RALAKLLPL	9	Unmodified	_RALAKLLPL_					0	0	0		chr19:51019142-51020068|391|14.94|0.6|4.63|-|ENST00000599077|KLK10,KLK10;ENSG00000129451|ENST00000358789|KLK10	chr19:51019142-51020068|391|14.94|0.6|4.63|-|ENST00000599077|KLK10,KLK10	chr19:51019142-51020068|391|14.94|0.6|4.63|-|ENST00000599077|KLK10,KLK10	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.8424987792969	2	497.84222	993.669886	-1.2788	-0.00063666	1.1639	0.00057942	-0.11497	-5.7237E-05	497.84258585289666	100.36	1.9869	98.067	97.704	99.691	-2.2884					79	39	4	0	0	0	0.16524	3	8987	8976;8987;8999		82.305	13.82	1	316410			47453	423	39358	39380	50894;50895;50896	50895					0.17279793370266816
RALAKLLPL	9	Unmodified	_RALAKLLPL_					0	0	0		chr19:51019142-51020068|391|14.94|0.6|4.63|-|ENST00000599077|KLK10,KLK10;ENSG00000129451|ENST00000358789|KLK10	chr19:51019142-51020068|391|14.94|0.6|4.63|-|ENST00000599077|KLK10,KLK10	chr19:51019142-51020068|391|14.94|0.6|4.63|-|ENST00000599077|KLK10,KLK10	MULTI-MATCH	OvCa9_classI_Rep3	3		2	497.84222	993.669886	-0.66517	-0.00033115	0.0020493	1.0202E-06	-0.66312	-0.00033013	497.8420068704646	99.692	2.11	98.007	97.624	99.734	-1.685	-0.029979	-0.00086541	NaN	82.305	91	41	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269280			47454	423	39358	39380							0.17279793370266816
RALALRVL	8	Unmodified	_RALALRVL_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.3265686035156	2	456.311087	910.60762	0.12385	5.6514E-05	0.80343	0.00036661	0.92728	0.00042313	456.3115280741174	73.63	0.89991	73.63	73.195	74.095	0					35	22	3	0	0	0	0.028476	1	7218	7218		52.299	0	1	342530			47455	1506	39359	39381	50897	50897					0.14874067021946757
RALCQMPQEE	10	Unmodified	_RALCQMPQEE_					0	0	0		ENST00000539777.5_1_1:168054037-168054433:-|nuORF	ENST00000539777.5_1_1:168054037-168054433:-|nuORF	ENST00000539777.5_1_1:168054037-168054433:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	603.7344360351562	2	602.77609	1203.53763	1.2222	0.00073669	1.8466	0.0011131	3.0687	0.0018497	602.7773053308082	139.33	1.5225	139.33	138.55	140.07	0					44	31	2	0	0	0	0.026931	1	16339	16339		30.318	16.864	1	135980			47456	13444	39360	39382	50898	50898					-0.055999674911390684
RALCSKIENS	10	Unmodified	_RALCSKIENS_					0	0	0			REV__ENSG00000147138|ENST00000645147|GPR174	REV__ENSG00000147138|ENST00000645147|GPR174	MULTI-MSMS	OvCa9_classI_Rep2	2	560.7906494140625	2	560.792598	1119.57064	0.076238	4.2753E-05	-3.3831	-0.0018972	-3.3069	-0.0018545	560.7906951341574	64.273	2.9179	61.548	60.968	63.886	-2.7245					181	56	6	0	0	0	0.70152	1	4949	4949		30.318	1.1477	1	2758800	+		47457	20047	39361	39383	50899	50899					0.015639826232018095
RALDLAGD	8	Unmodified	_RALDLAGD_					0	0	0		nc|ENSG00000111554|Q8TC05-4|MDM1;nc|ENSG00000111554|Q8TC05|MDM1;ENSG00000111554|ENST00000682720|MDM1	nc|ENSG00000111554|Q8TC05-4|MDM1	nc|ENSG00000111554|Q8TC05-4|MDM1	MULTI-MSMS	OvCa9_classI_Rep3	3	415.7223205566406	2	415.721967	829.429381	1.7526	0.00072857	-1.9593	-0.00081452	-0.20674	-8.5945E-05	415.72103499680065	120.01	1.8058	118.98	118.63	120.43	-1.0271					63	35	3	0	0	0	0.745	1	9119	9119		29.15	2.4566	1	271890			47458	2829	39362	39384	50900	50900					0.00784352312223291
RALEILLHP	9	Unmodified	_RALEILLHP_					0	0	0		ENSG00000145198|ENST00000691901|VWA5B2	ENSG00000145198|ENST00000691901|VWA5B2	ENSG00000145198|ENST00000691901|VWA5B2	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.32470703125	2	531.326934	1060.63931	-4.6346	-0.0024625	0.52784	0.00028046	-4.1068	-0.0021821	531.3270951252447	152.87	1.0005	151.43	151.13	152.13	-1.435					54	23	3	0	0	0	0.68424	1	15138	15138		21.96	0	1	151040			47459	5208	39363	39385	50901	50901					0.11142014985239257
RALEKVAPL	9	Unmodified	_RALEKVAPL_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA	ENSG00000172915|ENST00000379939|NBEA	ENSG00000172915|ENST00000379939|NBEA	MULTI-MSMS	OvCa9_classI_Rep3	3	498.8125915527344	2	498.813659	995.612765	-0.10557	-5.2658E-05	-0.22118	-0.00011033	-0.32674	-0.00016298	498.8134286419306	107.86	2.1308	106.67	106.38	108.51	-1.1978					94	40	3	0	0	0	0.38529	1	7675	7675		53.351	3.8154	1	572750			47460	7329	39364	39386	50902	50902					0.114783260938907
RALEKVAPL	9	Unmodified	_RALEKVAPL_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA	ENSG00000172915|ENST00000379939|NBEA	ENSG00000172915|ENST00000379939|NBEA	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.81439208984375	2	498.813659	995.612765	-1.804	-0.00089985	1.1667	0.00058198	-0.63725	-0.00031787	498.81412167064707	108.42	2.0013	106.69	106.42	108.42	-1.7256					88	38	3	0	0	0	0.29717	1	9934	9934		63.306	2.3343	1	538280			47461	7329	39364	39386	50903	50903					0.114783260938907
RALFCNMIN	9	Unmodified	_RALFCNMIN_					0	0	0			REV__tr|A0A553SF78|A0A553SF78_NIACIGalactose-1-phosphateuridylyltransferaseOS=NialliacirculansOX=1397GN=galTPE=3SV=1	REV__tr|A0A553SF78|A0A553SF78_NIACIGalactose-1-phosphateuridylyltransferaseOS=NialliacirculansOX=1397GN=galTPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	540.2893676757812	2	541.267704	1080.52086	-2.1257	-0.0011506	-2.4547	-0.0013286	-4.5803	-0.0024792	541.2661123609382	85.409	1.1858	83.918	83.406	84.592	-1.4906					60	23	3	0	0	0	0.027462	1	7404	7404		30.504	0	1	47590	+		47462	29542	39365	39387	50904	50904					-0.01618423586432982
RALFFFFFSCL	11	Unmodified	_RALFFFFFSCL_					0	0	0			REV__ENST00000450253.6_1_4:99801895-99802249:-|nuORF	REV__ENST00000450253.6_1_4:99801895-99802249:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.75946044921875	3	466.57401	1396.7002	0.14661	6.8406E-05	-3.4726	-0.0016202	-3.326	-0.0015518	466.5722735922049	32.627	0.29478	32.627	32.453	32.748	0					8	5	2	0	0	0	0.025955	1	1450	1450		18.531	0	1	25550	+		47463	25958	39366	39388	50905	50905					0.017717839731858476
RALFILEI	8	Unmodified	_RALFILEI_					0	0	0			REV__nc|ENSG00000204624|Q9P2K9-2|DISP3	REV__nc|ENSG00000204624|Q9P2K9-2|DISP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.3123474121094	2	487.805303	973.596052	1.8898	0.00092183	0.89849	0.00043829	2.7882	0.0013601	487.80529314927134	98.706	1.4491	98.706	98.121	99.57	0					45	34	2	0	0	0	0.028476	1	10987	10987		33.516	0	1	1630500	+		47464	23174	39367	39389	50906	50906					0.10819825207954636
RALFVKERRL	10	Unmodified	_RALFVKERRL_					0	0	0		nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-SECPEP	OvCa99_classI_Rep5	1	429.24505615234375	3	429.938451	1286.79352	-0.25311	-0.00010882	-1.7229	-0.00074075	-1.976	-0.00084957	430.27169106248726	39.203	0.40374	39.203	38.972	39.376	0					13	8	2	0	0	0	0.027006	1	2306	2306		18.531	0	1	39188			47465	7235	39368	39390	50907	50907					0.16159844470598728
RALFVLNL	8	Unmodified	_RALFVLNL_					0	0	0			REV__ENST00000473051.1_1_10:74095570-74096546:-|nuORF	REV__ENST00000473051.1_1_10:74095570-74096546:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.77008056640625	2	473.297645	944.580737	0.27195	0.00012871	-0.50415	-0.00023861	-0.2322	-0.0001099	473.2972037657201	57.465	0.46942	57.465	57.221	57.691	0					23	10	3	0	0	0	0.028476	1	4838	4838		18.324	6.1176	1	408730	+		47466	26323	39369	39391	50908	50908					0.10622958410738192
RALGLFPAL	9	Unmodified	_RALGLFPAL_					0	0	0			REV__ENST00000382363.7_1_22:30774947-30775040:-|nuORF	REV__ENST00000382363.7_1_22:30774947-30775040:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	479.297119140625	2	479.297645	956.580737	-1.3578	-0.00065077	2.0715	0.00099287	0.71375	0.0003421	479.2986205299696	63.594	1.7865	60.85	60.427	62.213	-2.7444					68	33	3	0	0	0	0.55588	1	4824	4824		37.159	3.6435	1	364840	+		47467	25214	39370	39392	50909	50909					0.10070958410744879
RALGNMALGAP	11	Unmodified	_RALGNMALGAP_					0	0	0		ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	ENSG00000185038|ENST00000389758|MROH2A	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3073120117188	2	535.792401	1069.57025	2.3695	0.0012695	0.41769	0.00022379	2.7872	0.0014933	536.2923661653484	74.994	0.67974	74.994	74.802	75.482	0					33	16	3	0	0	0	0.025416	1	7427	7427		26.693	1.2427	1	976650			47468	8217	39371	39393	50910	50910					0.03824607694014048
RALHMERL	8	Unmodified	_RALHMERL_					0	0	0		ENSG00000084731|ENST00000264712|KIF3C	ENSG00000084731|ENST00000264712|KIF3C	ENSG00000084731|ENST00000264712|KIF3C	MULTI-MSMS	OvCa99_classI_Rep5	1	513.7902221679688	2	513.287285	1024.56002	2.5833	0.001326	-0.67206	-0.00034496	1.9113	0.00098102	513.2865308766379	96.19	0.96752	96.19	95.913	96.881	0					51	22	4	0	0	0	0.66057	1	10543	10543		51.335	8.9393	1	1581400			47469	1719	39372	39394	50911	50911					0.048720447594405414
RALKRGLENTL	11	Unmodified	_RALKRGLENTL_					0	0	0		ENSG00000170819|ENST00000302334|BFSP2	ENSG00000170819|ENST00000302334|BFSP2	ENSG00000170819|ENST00000302334|BFSP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	635.3499145507812	2	635.883136	1269.75172	3.162	0.0020107	3.1596	0.0020091	6.3216	0.0040198	635.8843061071555	115.95	0.46046	115.95	115.73	116.19	0					12	9	2	0	0	0	0.025701	1	13263	13263		22.58	0	1	134620			47470	7138	39373	39395	50912	50912					0.12763243991435047
RALLALSPRL	10	Unmodified	_RALLALSPRL_					0	0	0			REV__ENSG00000162391|ENST00000302250|FAM151A	REV__ENSG00000162391|ENST00000302250|FAM151A	MULTI-MSMS	OvCa99_classI_Rep5	1	555.3624877929688	2	555.361308	1108.70806	2.5839	0.001435	-0.93614	-0.00051989	1.6477	0.00091508	555.3606483139098	75.978	2.0338	75.978	75.723	77.757	0					96	49	4	0	0	0	0.52439	1	7580	7580		51.193	1.6567	1	8395400	+		47471	20729	39374	39396	50913	50913					0.15805679284949292
RALLAVGR	8	Unmodified	_RALLAVGR_					0	0	0			REV__nc|ENSG00000184313|Q68CQ1-2|MROH7	REV__nc|ENSG00000184313|Q68CQ1-2|MROH7	MULTI-SECPEP	OvCa99_classI_Rep5	1	428.9186096191406	2	428.279786	854.54502	-0.00021915	-9.3858E-08	0.65493	0.00028049	0.65471	0.0002804	428.279897902799	52.412	0.48294	52.412	52.083	52.566	0					14	10	2	0	0	0	0.028476	1	4070	4070		3.41	0	1	167660	+		47472	22421	39375	39397	50914	50914					0.11192920953760677
RALLEVICT	9	Unmodified	_RALLEVICT_					0	0	0		ENST00000471665.1_1_7:56150908-56151407:-|nuORF;ENSG00000164776|ENST00000297373|PHKG1;nc|ENSG00000164776|Q16816-2|PHKG1	ENST00000471665.1_1_7:56150908-56151407:-|nuORF	ENST00000471665.1_1_7:56150908-56151407:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	509.29315185546875	2	509.291702	1016.56885	1.3151	0.00066975	2.4011	0.0012228	3.7161	0.0018926	509.2927862417461	29.04	0.88334	26.331	26.18	27.063	-2.7097					31	18	3	0	0	0	0.46377	1	657	657		45.952	12.436	1	75325			47473	6486	39376	39398	50915	50915					0.06122973605260995
RALLFVIL	8	Unmodified	_RALLFVIL_					0	0	0		ENSG00000105552|ENST00000316273|BCAT2;ENST00000595376.1_1_19:49302930-49310451:-|nuORF;nc|ENSG00000105552|O15382-2|BCAT2	ENSG00000105552|ENST00000316273|BCAT2	ENSG00000105552|ENST00000316273|BCAT2	MULTI-MSMS	OvCa99_classI_Rep5	1	472.8193359375	2	472.818213	943.621873	1.1472	0.0005424	0.57145	0.00027019	1.7186	0.00081259	472.8184254873909	142.69	0.73077	142.69	142.44	143.17	0					24	14	2	0	0	0	0.72922	1	16667	16667		37.028	1.8278	1	107980			47474	2470	39377	39399	50916	50916					0.14780719450232027
RALLLALRL	9	Unmodified	_RALLLALRL_					0	0	0			REV__ENSG00000234965|ENST00000621082|SHISA8	REV__ENSG00000234965|ENST00000621082|SHISA8	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.8424072265625	2	519.860944	1037.70733	-0.91798	-0.00047722	-3.3384	-0.0017355	-4.2564	-0.0022127	519.8597879184351	101.65	0.84244	100.89	100.42	101.26	-0.76401					21	16	2	0	0	0	0.027433	1	9346	9346		51.335	14.176	1	20067	+		47475	23403	39378	39400	50917	50917					0.1899888463588013
RALLLRPLL	9	Unmodified	_RALLLRPLL_					0	0	0			REV__HERVH-int_dup93|chr1:54900195-54903183:-|1.1315455096136964|0.040738276592419|4.8|412.0|30|2|sense	REV__HERVH-int_dup93|chr1:54900195-54903183:-|1.1315455096136964|0.040738276592419|4.8|412.0|30|2|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	532.8082885742188	2	532.868769	1063.72298	-1.6368	-0.00087218	-3.4363	-0.0018311	-5.0731	-0.0027033	532.8664442843615	76.315	0.15691	74.461	74.361	74.518	-1.854					4	2	2	0	0	0	0.027462	1	6303	6303		12.207	0	1	5486.1	+		47476	15832	39379	39401	50918	50918					0.19367171152930496
RALLRDYAE	9	Unmodified	_RALLRDYAE_					0	0	0		ENSG00000142444|ENST00000270502|TIMM29	ENSG00000142444|ENST00000270502|TIMM29	ENSG00000142444|ENST00000270502|TIMM29	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8013916015625	2	553.80128	1105.58801	0.29019	0.00016071	-0.74142	-0.0004106	-0.45124	-0.0002499	553.800853090458	59.574	2.3577	56.794	56.241	58.599	-2.7801					121	44	5	0	0	0	0.18193	3	4347	4347;4365;4385		79.451	10.048	1	1718100			47477	4971	39380	39402	50919;50920;50921	50919					0.03943646220500341
RALLRDYAE	9	Unmodified	_RALLRDYAE_					0	0	0		ENSG00000142444|ENST00000270502|TIMM29	ENSG00000142444|ENST00000270502|TIMM29	ENSG00000142444|ENST00000270502|TIMM29	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8020629882812	2	553.80128	1105.58801	0.49336	0.00027322	-1.3777	-0.00076298	-0.88435	-0.00048976	553.8005670666216	60.304	2.535	56.874	56.504	59.039	-3.43					130	51	5	0	0	0	0.21231	1	4093	4093		74.255	5.4682	1	5110100			47478	4971	39380	39402	50922	50922					0.03943646220500341
RALLRLPQ	8	Unmodified	_RALLRLPQ_					0	0	0		ENST00000396954.7_1_5:52405227-52405491:-|nuORF	ENST00000396954.7_1_5:52405227-52405491:-|nuORF	ENST00000396954.7_1_5:52405227-52405491:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	483.8263854980469	2	483.813993	965.613434	-0.92196	-0.00044606	0.95688	0.00046295	0.034921	1.6895E-05	483.814066528086	77.874	0.9509	75.521	75.047	75.998	-2.3527					23	18	2	0	0	0	0.028476	1	4045	4045		60.294	12.378	1	21917			47479	11330	39381	39403	50923	50923					0.12925165533590643
RALLRPGA	8	Unmodified	_RALLRPGA_					0	0	0		ENST00000397110.6_1_22:37576398-37578231:-|nuORF	ENST00000397110.6_1_22:37576398-37578231:-|nuORF	ENST00000397110.6_1_22:37576398-37578231:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	428.2380065917969	2	427.271961	852.52937	-0.49155	-0.00021003	-0.91694	-0.00039178	-1.4085	-0.00060181	427.2713238502571	41.797	0.43179	41.797	41.55	41.982	0					14	9	2	0	0	0	0.028476	1	2612	2612		7.6903	0	1	51063			47480	11339	39382	39404	50924	50924					0.09720634436700948
RALLVHFTR	9	Unmodified	_RALLVHFTR_					0	0	0			REV__ENSG00000242689|ENST00000361987|CNTF	REV__ENSG00000242689|ENST00000361987|CNTF	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.8784790039062	2	556.838	1111.66145	-0.29339	-0.00016337	4.0956	0.0022806	3.8022	0.0021172	556.840383746563	38.003	0.12827	38.003	37.94	38.069	0					4	2	2	0	0	0	0.027455	1	2129	2129		34.173	0	1	11702	+		47481	23459	39383	39405	50925	50925					0.11008239453622082
RALLVLAPL	9	Unmodified	_RALLVLAPL_					0	0	0			REV__ENSG00000189409|ENST00000356026|MMP23B	REV__ENSG00000189409|ENST00000356026|MMP23B	MULTI-SECPEP	OvCa9_classI_Rep2	2	484.30767822265625	2	483.328945	964.643337	0.88947	0.0004299	-1.0096	-0.00048798	-0.12016	-5.8077E-05	483.3283659187056	129.39	0.64201	129.16	128.92	129.56	-0.22696					22	12	2	0	0	0	0.027462	1	12743	12743		26.796	0	1	20170	+		47482	22777	39384	39406	50926	50926					0.15960104478915582
RALMQIENP	9	Unmodified	_RALMQIENP_					0	0	0			REV__ENST00000418231.2_1_X:73350641-73351442:+|nuORF	REV__ENST00000418231.2_1_X:73350641-73351442:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.3444213867188	2	536.284408	1070.55426	-1.9053	-0.0010218	1.2582	0.00067473	-0.64718	-0.00034708	537.2891870170731	45.492	0.52351	42.454	42.281	42.805	-3.0385					14	9	3	0	0	0	0.027462	1	2312	2312		20.947	0	1	12164	+		47483	25568	39385	39407	50927	50927					0.0218090145710903
RALMRRYS	8	Unmodified	_RALMRRYS_					0	0	0			REV__nc|ENSG00000161179|A8MPS7-3|YDJC	REV__nc|ENSG00000161179|A8MPS7-3|YDJC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.2625732421875	2	526.792735	1051.57092	-2.077	-0.0010942	0.82933	0.00043689	-1.2477	-0.00065727	526.792996157169	107.08	0.78055	105.2	104.96	105.74	-1.8785					33	14	3	0	0	0	0.028476	1	9777	9777		68.485	12.98	1	237820	+		47484	28960	39386	39408	50928	50928					0.04719447133720678
RALMRRYS	8	Unmodified	_RALMRRYS_					0	0	0			REV__nc|ENSG00000161179|A8MPS7-3|YDJC	REV__nc|ENSG00000161179|A8MPS7-3|YDJC	MULTI-MATCH	OvCa9_classI_Rep2	2		2	526.792735	1051.57092	-0.56171	-0.0002959	-0.75126	-0.00039576	-1.313	-0.00069166	526.7922320828541	105.58	1.1978	105.14	104.8	106	-0.43642	0.077795	-0.00072901	NaN	68.485	51	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168620	+		47485	28960	39386	39408							0.04719447133720678
RALNMHYNK	9	Unmodified	_RALNMHYNK_					0	0	0		ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	ENSG00000117707|ENST00000366958|PROX1	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.7616577148438	2	573.795475	1145.5764	1.3246	0.00076006	-0.25594	-0.00014686	1.0687	0.0006132	573.7955988518171	149.1	0.49139	149.1	148.82	149.31	0					14	9	2	0	0	0	0.027462	1	17471	17471		53.351	5.3919	1	27993			47486	3275	39387	39409	50929	50929					0.009431259255279656
RALPLALVL	9	Unmodified	_RALPLALVL_					0	0	0		ENSG00000025708|ENST00000252029|TYMP;nc|ENSG00000025708|P19971-2|TYMP	ENSG00000025708|ENST00000252029|TYMP	ENSG00000025708|ENST00000252029|TYMP	MULTI-MSMS	OvCa99_classI_Rep5	1	483.32989501953125	2	483.328945	964.643337	1.7155	0.00082913	0.28818	0.00013929	2.0036	0.00096842	483.3288736853622	129.7	0.51352	129.7	129.5	130.01	0					17	10	3	0	0	0	0.61208	1	15048	15048		30.504	5.0535	1	80652			47487	1047	39388	39410	50930	50930					0.15960104478915582
RALPQSRAIAQ	11	Unmodified	_RALPQSRAIAQ_					0	0	0			REV__nc|ENSG00000169994|Q6PIF6|MYO7B	REV__nc|ENSG00000169994|Q6PIF6|MYO7B	MULTI-MSMS	OvCa9_classI_Rep4_	4	605.855712890625	2	605.854378	1209.6942	4.1393	0.0025078	-2.283	-0.0013832	1.8563	0.0011247	605.852935555119	133.3	2.5623	131.77	131.46	134.02	-1.5257					111	51	4	0	0	0	0.67529	1	12876	12876		37.812	0	1	751530	+		47488	21507	39389	39411	50931	50931					0.09774401785853115
RALPSIILL	9	Unmodified	_RALPSIILL_					0	0	0		ENSG00000134830|ENST00000595464|C5AR2	ENSG00000134830|ENST00000595464|C5AR2	ENSG00000134830|ENST00000595464|C5AR2	MULTI-MSMS	OvCa9_classI_Rep2	2	498.333740234375	2	498.334227	994.653902	0.2425	0.00012085	-0.5271	-0.00026267	-0.2846	-0.00014182	498.33387359588454	132.52	1.8753	132.29	131.93	133.81	-0.22696					110	37	5	0	0	0	0.3076	1	13072	13072		62.107	10.772	1	948910			47489	4336	39390	39412	50932	50932					0.15636087133384535
RALQDSSLPKI	11	Unmodified	_RALQDSSLPKI_					0	0	0		ENSG00000196169|ENST00000389916|KIF19	ENSG00000196169|ENST00000389916|KIF19	ENSG00000196169|ENST00000389916|KIF19	MULTI-MSMS	OvCa99_classI_Rep5	1	614.359130859375	2	614.356419	1226.69829	2.0544	0.0012621	0.1323	8.1277E-05	2.1867	0.0013434	614.3561943028594	77.482	0.63188	77.482	77.252	77.884	0					38	14	4	0	0	0	0.4646	1	7808	7808		56.434	1.7114	1	1882300			47490	8572	39391	39413	50933	50933					0.09400446488893976
RALQEPIKL	9	Unmodified	_RALQEPIKL_					0	0	0			REV__tr|A0A553SFW3|A0A553SFW3_NIACIUncharacterizedproteinYhaNAAAdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09590PE=4SV=1	REV__tr|A0A553SFW3|A0A553SFW3_NIACIUncharacterizedproteinYhaNAAAdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09590PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	534.3331909179688	2	534.332216	1066.64988	-0.40206	-0.00021484	0.76821	0.00041048	0.36615	0.00019565	534.3325699801375	69.568	0.82353	69.568	69.307	70.13	0					54	19	4	0	0	0	0.1944	2	6611	6611;6643		77.318	6.5014	1	7524900	+		47491	29630	39392	39414	50934;50935	50934					0.11921997639660731
RALQEPIKL	9	Unmodified	_RALQEPIKL_					0	0	0			REV__tr|A0A553SFW3|A0A553SFW3_NIACIUncharacterizedproteinYhaNAAAdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09590PE=4SV=1	REV__tr|A0A553SFW3|A0A553SFW3_NIACIUncharacterizedproteinYhaNAAAdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09590PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	534.332216	1066.64988	-0.40206	-0.00021484	0.76821	0.00041048	0.36615	0.00019565	534.3325699801375	69.568	0.82353	69.568	69.307	70.13	0	0.07375	0.00019851	NaN	77.318	54	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7524900	+		47492	29630	39392	39414							0.11921997639660731
RALQEPIKL	9	Unmodified	_RALQEPIKL_					0	0	0			REV__tr|A0A553SFW3|A0A553SFW3_NIACIUncharacterizedproteinYhaNAAAdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09590PE=4SV=1	REV__tr|A0A553SFW3|A0A553SFW3_NIACIUncharacterizedproteinYhaNAAAdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09590PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	534.332216	1066.64988	-0.50606	-0.00027041	-4.9232	-0.0026306	-5.4292	-0.002901	534.3296503863371	71.779	0.31083	69.272	69.174	69.485	-2.5071	-0.22228	-0.0058837	NaN	77.318	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8686.4	+		47493	29630	39392	39414							0.11921997639660731
RALQEPIKL	9	Unmodified	_RALQEPIKL_					0	0	0			REV__tr|A0A553SFW3|A0A553SFW3_NIACIUncharacterizedproteinYhaNAAAdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09590PE=4SV=1	REV__tr|A0A553SFW3|A0A553SFW3_NIACIUncharacterizedproteinYhaNAAAdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09590PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	534.332216	1066.64988	-2.1691	-0.001159	0.64308	0.00034362	-1.5261	-0.00081543	534.3325408255253	73.039	0.29018	69.642	69.495	69.785	-3.3961	0.14853	6.4778E-05	NaN	77.318	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32743	+		47494	29630	39392	39414							0.11921997639660731
RALRELALP	9	Unmodified	_RALRELALP_					0	0	0		ENSG00000167173|ENST00000394987|C15orf39;nc|nan|Q6ZRI6-2|C15orf39	ENSG00000167173|ENST00000394987|C15orf39	ENSG00000167173|ENST00000394987|C15orf39	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.7681884765625	2	519.824558	1037.63456	-0.55383	-0.00028789	1.8766	0.00097549	1.3227	0.0006876	519.825415192186	77.683	0.33779	74.866	74.632	74.97	-2.8165					18	6	4	0	0	0	0.027447	1	6236	6236		47.657	0	1	201930			47495	6764	39393	39415	50936	50936					0.11725130842455656
RALRNIIIV	9	Unmodified	_RALRNIIIV_					0	0	0		ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	MULTI-SECPEP	OvCa9_classI_Rep2	2	533.8037719726562	2	534.356025	1066.6975	-1.8414	-0.00098398	1.5174	0.00081085	-0.32401	-0.00017313	534.3567454695971	55.955	0.79201	53.151	52.83	53.622	-2.804					21	15	2	0	0	0	0.027462	1	3891	3891		38.806	25.847	1	38420			47496	4474	39394	39416	50937	50937					0.16681696630507759
RALRNIIIV	9	Unmodified	_RALRNIIIV_					0	0	0		ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	ENSG00000136237|ENST00000665637|RAPGEF5	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	534.356025	1066.6975	-0.74894	-0.0004002	0.53484	0.0002858	-0.21409	-0.0001144	534.3562033061023	56.881	0.91616	53.536	53.273	54.189	-3.3449	0.19272	-0.00057299	NaN	29.15	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42668			47497	4474	39394	39416							0.16681696630507759
RALSNILLL	9	Unmodified	_RALSNILLL_					0	0	0		nc|ENSG00000169180|Q96QU8-2|XPO6;ENSG00000169180|ENST00000304658|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	nc|ENSG00000169180|Q96QU8-2|XPO6	MULTI-MSMS	OvCa99_classI_Rep5	1	506.8306579589844	2	506.829309	1011.64407	1.989	0.0010081	-0.016765	-8.4968E-06	1.9722	0.00099958	506.8291826861078	113.65	1.0898	113.65	113.38	114.47	0					62	25	4	0	0	0	0.22621	1	12989	12989		71.877	3.3928	1	5550400			47498	6983	39395	39417	50938	50938					0.13870899128005476
RALSRHSSVEV	11	Unmodified	_RALSRHSSVEV_					0	0	0		ENST00000439268.6_1_19:5916266-5917058:-|nuORF	ENST00000439268.6_1_19:5916266-5917058:-|nuORF	ENST00000439268.6_1_19:5916266-5917058:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	620.3666381835938	2	620.841468	1239.66838	0.83507	0.00051845	1.3961	0.00086674	2.2311	0.0013852	621.3438141180497	155.34	0.35696	155.34	155.07	155.43	0					8	6	2	0	0	0	0.025701	1	18184	18184		11.636	0	1	13404			47499	11910	39396	39418	50939	50939					0.058135075435757244
RALTYSLAVL	10	Unmodified	_RALTYSLAVL_					0	0	0			REV__ENSG00000106541|ENST00000419304|AGR2	REV__ENSG00000106541|ENST00000419304|AGR2	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8289794921875	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.76627	1	14312	14312		23.042	0	1	245610	+		47500	17809	39397	39419	50940	50940					0.10094577919812764
RALVELLLN	9	Unmodified	_RALVELLLN_					0	0	0			REV__L1M4_dup669|chr1:145841513-145841995:-|1.3321024439662876|0.3377737044666122|1.98|429.0|2|1|sense	REV__L1M4_dup669|chr1:145841513-145841995:-|1.3321024439662876|0.3377737044666122|1.98|429.0|2|1|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.8433227539062	2	520.826766	1039.63898	-0.89129	-0.00046421	1.7345	0.00090337	0.8432	0.00043916	520.8275895686342	101.39	1.0408	100.63	100.37	101.41	-0.76401					27	20	2	0	0	0	0.027433	1	9292	9292		42.396	0	1	37321	+		47501	28362	39398	39420	50941	50941					0.12074595265380594
RALVELLLN	9	Unmodified	_RALVELLLN_					0	0	0			REV__L1M4_dup669|chr1:145841513-145841995:-|1.3321024439662876|0.3377737044666122|1.98|429.0|2|1|sense	REV__L1M4_dup669|chr1:145841513-145841995:-|1.3321024439662876|0.3377737044666122|1.98|429.0|2|1|sense	MULTI-MATCH	OvCa9_classI_Rep3	3		2	520.826766	1039.63898	-0.48189	-0.00025098	1.7325	0.00090235	1.2507	0.00065137	520.8275319583578	102.23	1.094	100.71	100.42	101.52	-1.5211	0.031046	4.9075E-05	NaN	42.396	28	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55117	+		47502	28362	39398	39420							0.12074595265380594
RALVRNLF	8	Unmodified	_RALVRNLF_					0	0	0		ENSG00000122299|ENST00000355758|ZC3H7A;ENST00000575170.1_1_16:11869425-11876228:-|nuORF	ENSG00000122299|ENST00000355758|ZC3H7A	ENSG00000122299|ENST00000355758|ZC3H7A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.7767028808594	2	494.806168	987.597784	-1.1856	-0.00058665	-0.34707	-0.00017173	-1.5327	-0.00075838	494.8058693542887	50.559	0.61678	47.386	47.205	47.821	-3.1734					22	11	2	0	0	0	0.028476	1	2961	2961		20.482	7.5226	1	61232			47503	3525	39399	39421	50942	50942					0.10348879016567025
RALVVRKVP	9	Unmodified	_RALVVRKVP_					0	0	0		ENSG00000137834|ENST00000288840|SMAD6;nc|ENSG00000137834|O43541-2|SMAD6	ENSG00000137834|ENST00000288840|SMAD6	ENSG00000137834|ENST00000288840|SMAD6	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.3331909179688	2	519.350743	1036.68693	-0.37423	-0.00019436	-4.3169	-0.002242	-4.6912	-0.0024364	519.3491441672174	76.793	0.41467	75.003	74.688	75.103	-1.7894					10	7	2	0	0	0	0.027462	1	6365	6365		12.959	0.75233	1	4255.3			47504	4628	39400	39422	50943	50943					0.1700571397609565
RALWLCLS	8	Unmodified	_RALWLCLS_					0	0	0		ENST00000488007.5_1_12:6649651-6660148:-|nuORF	ENST00000488007.5_1_12:6649651-6660148:-|nuORF	ENST00000488007.5_1_12:6649651-6660148:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2931213378906	2	481.26803	960.521507	2.9568	0.001423	-0.32324	-0.00015556	2.6335	0.0012674	481.2677512909165	89.547	0.53448	89.547	89.313	89.848	0					31	12	3	0	0	0	0.028476	1	9552	9552		38.806	13.356	1	960780			47505	12660	39401	39423	50944	50944					0.03966739124905416
RAMANSLKP	9	Unmodified	_RAMANSLKP_					0	0	0			REV__ENST00000574201.1_1_17:7217587-7218431:-|nuORF	REV__ENST00000574201.1_1_17:7217587-7218431:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.8097229003906	2	494.273844	986.533135	-0.31068	-0.00015356	-2.8408	-0.0014041	-3.1515	-0.0015577	494.2720118992103	53.018	0.60443	53.018	52.784	53.389	0					22	13	3	0	0	0	0.027462	1	4232	4232		56.721	32.518	1	442450	+		47506	19084	39402	39424	50945	50945					0.039329361482487
RAMCSEIIL	9	Carbamidomethyl (C)	_RAMC(Carbamidomethyl (C))SEIIL_	RAMC(1)SEIIL		RAMC(80)SEIIL		0	1	0		nc|ENSG00000163964|Q8TBF5-2|PIGX;ENSG00000163964|ENST00000392391|PIGX;ENST00000495440.1_1_3:196439919-196444680:+|nuORF	nc|ENSG00000163964|Q8TBF5-2|PIGX	nc|ENSG00000163964|Q8TBF5-2|PIGX	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.7818603515625	2	546.780644	1091.54674	3.705	0.0020258	-0.89176	-0.0004876	2.8133	0.0015382	546.7800033528225	131.81	1.3099	130.31	129.98	131.29	-1.5015					60	25	3	0	0	0	0.1804	1	12678	12678		79.713	10.926	1	73348			47507	6390	39403	39425	50946	50946	61				0.004624258651801938
RAMCTDLLL	9	Carbamidomethyl (C)	_RAMC(Carbamidomethyl (C))TDLLL_	RAMC(1)TDLLL		RAMC(69)TDLLL		0	1	0		nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;GAPVD1|p.N321*|1|0.19|ENSG00000165219|chr9:125302758-125302776|AATCCAGAACAATATGGAA/-|frameshift_variant	nc|ENSG00000165219|Q14C86-5|GAPVD1	nc|ENSG00000165219|Q14C86-5|GAPVD1	MULTI-MSMS	OvCa9_classI_Rep3	3	546.78271484375	2	546.780644	1091.54674	-0.36544	-0.00019982	3.2057	0.0017528	2.8403	0.001553	546.7822304801582	131.49	1.0801	130.37	130.06	131.14	-1.1249					48	21	4	0	0	0	0.24951	1	10476	10476		68.787	7.8149	1	61799			47508	6537	39404	39426	50947	50947	64				0.004624258651801938
RAMESTESR	9	Unmodified	_RAMESTESR_					0	0	0		nc|ENSG00000160710|P55265-5|ADAR;nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR;ENST00000534279.1_1_1:154558555-154560745:-|nuORF;ENST00000530954.1_1_1:154558222-154560745:-|nuORF	nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-5|ADAR	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.34912109375	2	533.75093	1065.48731	-1.8422	-0.0009833	-1.0698	-0.00057101	-2.9121	-0.0015543	533.750269508878	95.179	0.25027	92.711	92.561	92.811	-2.4685					7	4	2	0	0	0	0.027461	1	8344	8344		40.778	0	1	17279			47509	6084	39405	39427	50948	50948					-0.042817538246254117
RAMIPEKFI	9	Unmodified	_RAMIPEKFI_					0	0	0		tr|A0A7D6ZF55|A0A7D6ZF55_9CLOTSporulationproteinYqfDOS=ClostridiumintestinaleOX=36845GN=yqfDPE=4SV=1	tr|A0A7D6ZF55|A0A7D6ZF55_9CLOTSporulationproteinYqfDOS=ClostridiumintestinaleOX=36845GN=yqfDPE=4SV=1	tr|A0A7D6ZF55|A0A7D6ZF55_9CLOTSporulationproteinYqfDOS=ClostridiumintestinaleOX=36845GN=yqfDPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.3160400390625	2	552.815344	1103.61614	-1.3333	-0.00073704	-2.8534	-0.0015774	-4.1866	-0.0023144	553.3156163437349	107.05	1.8169	105.17	104.7	106.51	-1.8784					99	35	5	0	0	0	0.37135	1	9765	9765		54.776	5.3348	1	692870			47510	35499	39406	39428	50949	50949					0.06847252876241328
RAMLKHNL	8	Oxidation (M)	_RAM(Oxidation (M))LKHNL_		RAM(1)LKHNL		RAM(63)LKHNL	0	0	1		nc|ENSG00000143344|Q9NZL6-2|RGL1;ENSG00000143344|ENST00000360851|RGL1	nc|ENSG00000143344|Q9NZL6-2|RGL1	nc|ENSG00000143344|Q9NZL6-2|RGL1	MULTI-MSMS	OvCa99_classI_Rep5	1	499.7810363769531	2	499.781836	997.549119	-0.83954	-0.00041959	-2.4287	-0.0012138	-3.2682	-0.0016334	499.78032476620484	49.529	0.86902	49.529	49.287	50.156	0					54	19	4	0	0	0	0.60486	1	3696	3696		62.978	10.679	1	3295000			47511	5039	39407	39429	50950	50950		162			0.05024642385149036
RANDRQFQN	9	Unmodified	_RANDRQFQN_					0	0	0			REV__nc|ENSG00000148498|Q8TEW0-7|PARD3	REV__nc|ENSG00000148498|Q8TEW0-7|PARD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.3150024414062	2	574.78141	1147.54827	0.44774	0.00025735	2.1158	0.0012161	2.5635	0.0014735	575.2853596290421	114.88	0.32867	114.88	114.74	115.07	0					11	6	2	0	0	0	0.027447	1	13136	13136		47.657	13.485	1	52134	+		47512	20115	39408	39430	50951	50951					-0.019604807301902838
RANGKNQKLL	10	Unmodified	_RANGKNQKLL_					0	0	0		tr|A0A553SP60|A0A553SP60_NIACIRqc2homologRqcHOS=NialliacirculansOX=1397GN=rqcHPE=3SV=1	tr|A0A553SP60|A0A553SP60_NIACIRqc2homologRqcHOS=NialliacirculansOX=1397GN=rqcHPE=3SV=1	tr|A0A553SP60|A0A553SP60_NIACIRqc2homologRqcHOS=NialliacirculansOX=1397GN=rqcHPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	571.3436889648438	2	571.343646	1140.67274	-0.83933	-0.00047955	0.36778	0.00021013	-0.47156	-0.00026942	571.3436861071159	40.687	1.5633	37.732	37.474	39.038	-2.9541					80	29	4	0	0	0	0.6104	1	1781	1781		40.778	2.9666	1	394980			47513	34005	39409	39431	50952	50952					0.10803016757131445
RANLNKFFGE	10	Unmodified	_RANLNKFFGE_					0	0	0			REV__tr|A0A553STR1|A0A553STR1_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_05360PE=3SV=1	REV__tr|A0A553STR1|A0A553STR1_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_05360PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.2890014648438	2	598.314554	1194.61456	1.961	0.0011733	4.41	0.0026386	6.371	0.0038118	598.3156488114311	122.82	0.9631	122.82	121.94	122.91	0					31	20	3	0	0	0	0.027028	1	14150	14150		31.53	2.3598	1	96186	+		47514	31000	39410	39432	50953	50953					0.025033351118281644
RANNQLKNFA	10	Unmodified	_RANNQLKNFA_					0	0	0			REV__chr6:112064997-112066969|366|24.13|0.5|5.6|+|1|CCN6,CCN6|1	REV__chr6:112064997-112066969|366|24.13|0.5|5.6|+|1|CCN6,CCN6|1	MULTI-MSMS	OvCa9_classI_Rep2	2	588.3177490234375	2	588.317628	1174.6207	-0.86515	-0.00050898	0.29962	0.00017627	-0.56553	-0.00033271	588.3178156551718	47.322	1.787	44.612	44.142	45.929	-2.7097					114	35	4	0	0	0	0.55359	1	2921	2921		47.657	3.2801	1	1251100	+		47515	16068	39411	39433	50954	50954					0.04037853343356801
RANRHTPCNE	10	Unmodified	_RANRHTPCNE_					0	0	0			REV__ENSG00000163728|ENST00000296015|TTC14	REV__ENSG00000163728|ENST00000296015|TTC14	MULTI-SECPEP	OvCa99_classI_Rep5	1	599.30224609375	2	599.28072	1196.54689	0.57467	0.00034439	-2.3202	-0.0013905	-1.7455	-0.0010461	599.2795812796383	162.25	0.55611	162.25	161.92	162.48	0					19	10	3	0	0	0	0.026956	1	19032	19032		19.997	0	1	77071	+		47516	20879	39412	39434	50955	50955					-0.04352438090609212
RANTFAVTV	9	Unmodified	_RANTFAVTV_					0	0	0			REV__nc|ENSG00000127980|O43933-2|PEX1	REV__nc|ENSG00000127980|O43933-2|PEX1	MULTI-MSMS	OvCa99_classI_Rep5	1	489.7737121582031	2	489.771991	977.529429	-0.94974	-0.00046516	0.01329	6.5089E-06	-0.93645	-0.00045865	489.7718234853168	65.485	1.3444	65.485	65.231	66.575	0					91	33	4	0	0	0	0.13482	1	6034	6034		87.754	2.8388	1	9578200	+		47517	18835	39413	39435	50956	50956					0.039765896460380645
RAPAGSVSP	9	Unmodified	_RAPAGSVSP_					0	0	0		ENST00000536896.2_1_1:26145941-26146436:-|nuORF	ENST00000536896.2_1_1:26145941-26146436:-|nuORF	ENST00000536896.2_1_1:26145941-26146436:-|nuORF	MSMS	OvCa99_classI_Rep5	1	421.2301025390625	2	421.229959	840.445365	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.139	1	26.139	25.639	26.639	0								0	0	0	0.19941	1	653	653		26.693	2.4902	1				47518	13397	39414	39436	50957	50957					0.018760585491349957
RAPALLPLLLL	11	Unmodified	_RAPALLPLLLL_					0	0	0		nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	nc|ENSG00000254402|Q50LG9|LRRC24	MULTI-MSMS	OvCa9_classI_Rep2	2	595.4049072265625	2	595.405184	1188.79581	-3.2474	-0.0019335	3.1968	0.0019034	-0.05051	-3.0074E-05	595.4069549535949	148.18	1.6013	147.95	147.62	149.22	-0.22697					84	31	4	0	0	0	0.32727	1	14997	14997		66.429	0	1	246660			47519	15352	39415	39437	50958	50958					0.20896880155714825
RAPARGRTK	9	Unmodified	_RAPARGRTK_					0	0	0		ENST00000549913.6_1_12:113306162-113306792:+|nuORF	ENST00000549913.6_1_12:113306162-113306792:+|nuORF	ENST00000549913.6_1_12:113306162-113306792:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.8257141113281	2	506.809774	1011.60499	0.60675	0.00030751	1.6317	0.00082698	2.2385	0.0011345	506.8093322538667	36.147	0.25053	33.298	33.189	33.439	-2.849					6	4	2	0	0	0	0.027462	1	1216	1216		10.265	0.5596	1	7455.4			47520	13578	39416	39438	50959	50959					0.0996561161698537
RAPCTSTPI	9	Unmodified	_RAPCTSTPI_					0	0	0			REV__ENST00000316843.8_1_17:18146113-18147360:+|nuORF	REV__ENST00000316843.8_1_17:18146113-18147360:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	473.77069091796875	2	473.244752	944.474951	1.0852	0.00051355	-0.44032	-0.00020838	0.64485	0.00030517	473.24430396506006	105.34	0.88441	103.99	103.68	104.56	-1.3482					35	16	3	0	0	0	0.027462	1	7430	7430		35.618	0	1	47908	+		47521	24408	39417	39439	50960	50960					0.0004925450296013878
RAPCTSTPI	9	Unmodified	_RAPCTSTPI_					0	0	0			REV__ENST00000316843.8_1_17:18146113-18147360:+|nuORF	REV__ENST00000316843.8_1_17:18146113-18147360:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	473.244752	944.474951	-0.7191	-0.00034031	1.4053	0.00066507	0.68625	0.00032476	473.2451696568214	104.34	0.74487	103.76	103.52	104.27	-0.57639	-0.15026	0.0005869	NaN	20.947	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43876	+		47522	24408	39417	39439							0.0004925450296013878
RAPCTYTL	8	Unmodified	_RAPCTYTL_					0	0	0		ENSG00000072195|ENST00000312358|SPEG;nc|ENSG00000072195|Q15772-1|SPEG	ENSG00000072195|ENST00000312358|SPEG	ENSG00000072195|ENST00000312358|SPEG	MULTI-SECPEP	OvCa99_classI_Rep5	1	461.7419738769531	2	462.73402	923.453487	-0.83426	-0.00038604	-3.3826	-0.0015653	-4.2169	-0.0019513	462.73264092260104	49.728	0.52621	49.728	49.373	49.899	0					19	11	3	0	0	0	0.028476	1	3728	3728		31.955	12.595	1	117480			47523	1468	39418	39440	50961	50961					-0.011301305257461536
RAPEDRPLL	9	Unmodified	_RAPEDRPLL_					0	0	0		ENST00000294618.11_1_19:11346413-11348365:-|nuORF	ENST00000294618.11_1_19:11346413-11348365:-|nuORF	ENST00000294618.11_1_19:11346413-11348365:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	533.8045043945312	2	533.803823	1065.59309	-1.8776	-0.0010023	1.4425	0.00077003	-0.43507	-0.00023224	533.8045260164237	55.812	1.8344	53.008	52.432	54.266	-2.804					100	36	4	0	0	0	0.1944	2	3886	3886;3921		77.318	7.69	1	896000			47524	10116	39419	39441	50962;50963	50962					0.06291950083118536
RAPEFLKLKH	10	Unmodified	_RAPEFLKLKH_					0	0	0		ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8688354492188	2	619.87204	1237.72953	-3.6059	-0.0022352	-0.65337	-0.00040501	-4.2593	-0.0026402	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.79213	1	12997	12997		19.997	0.89325	1	664560			47525	3293	39420	39442	50964	50964					0.12017064313636183
RAPGRRLPP	9	Unmodified	_RAPGRRLPP_					0	0	0		ENST00000418388.5_1_9:139008829-139010481:-|nuORF	ENST00000418388.5_1_9:139008829-139010481:-|nuORF	ENST00000418388.5_1_9:139008829-139010481:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.9533386230469	2	510.314692	1018.61483	-0.89886	-0.0004587	2.664	0.0013595	1.7651	0.00090075	510.3159828243397	48.649	0.84474	45.888	45.629	46.473	-2.7603					24	16	2	0	0	0	0.027462	1	3048	3048		25.45	7.1258	1	28424			47526	11639	39421	39443	50965	50965					0.10626799622343697
RAPHVMLI	8	Unmodified	_RAPHVMLI_					0	0	0			REV__ENSG00000154358|ENST00000680850|OBSCN	REV__ENSG00000154358|ENST00000680850|OBSCN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	468.3066101074219	2	468.776022	935.537492	-0.018972	-8.8936E-06	-0.40888	-0.00019167	-0.42785	-0.00020057	468.7763504260497	103.42	0.31074	101.22	101.09	101.4	-2.1994					6	5	2	0	0	0	0.028476	1	9356	9356		35.201	6.9464	1	8972.8	+		47527	20380	39422	39444	50966	50966					0.06714445361819799
RAPKELRLA	9	Unmodified	_RAPKELRLA_					0	0	0		ENSG00000185742|ENST00000327419|C11orf87	ENSG00000185742|ENST00000327419|C11orf87	ENSG00000185742|ENST00000327419|C11orf87	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.77880859375	2	527.330008	1052.64546	-1.5593	-0.00082228	-0.33942	-0.00017899	-1.8988	-0.0010013	527.329485921152	53.691	0.71601	50.443	50.006	50.722	-3.2474					14	13	2	0	0	0	0.027462	1	3255	3255		26.693	0	1	13085			47528	8278	39423	39445	50967	50967					0.12124533216751843
RAPKPSASL	9	Unmodified	_RAPKPSASL_					0	0	0			REV__ENST00000381941.7_1_20:814390-814579:+|nuORF	REV__ENST00000381941.7_1_20:814390-814579:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	463.7979736328125	2	463.774534	925.534515	0.16197	7.5116E-05	0.86325	0.00040035	1.0252	0.00047547	463.77498633183717	70.672	1.2789	68.102	67.462	68.741	-2.5707					37	24	2	0	0	0	0.027448	1	5673	5673		27.882	0	1	50687	+		47529	25207	39424	39446	50968	50968					0.06876893508649573
RAPKVLQCL	9	Unmodified	_RAPKVLQCL_					0	0	0		chr19:50948759-50948859|161|76.32|0.65|6.88|-|0|None,KLK5|1	chr19:50948759-50948859|161|76.32|0.65|6.88|-|0|None,KLK5|1	chr19:50948759-50948859|161|76.32|0.65|6.88|-|0|None,KLK5|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.8253173828125	2	514.307687	1026.60082	-0.28612	-0.00014715	-2.6311	-0.0013532	-2.9172	-0.0015003	514.8077495247139	79.098	0.571	76.346	75.991	76.562	-2.7514					17	11	2	0	0	0	0.027462	1	6364	6364		23.042	0.0057756	1	31173			47530	419	39425	39447	50969	50969					0.08858386079032243
RAPLATMESL	10	Unmodified	_RAPLATMESL_					0	0	0		ENSG00000134780|ENST00000257215|DAGLA	ENSG00000134780|ENST00000257215|DAGLA	ENSG00000134780|ENST00000257215|DAGLA	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.8410034179688	2	544.792066	1087.56958	1.6273	0.00088653	4.2748	0.0023289	5.9021	0.0032154	544.7939694884212	119.91	0.44184	119.91	119.74	120.18	0					17	9	2	0	0	0	0.026849	1	13783	13783		32.812	0	1	118720			47531	4329	39426	39448	50970	50970					0.02929768254307419
RAPLGSAEGVC	11	Unmodified	_RAPLGSAEGVC_					0	0	0		ENST00000550292.1_1_12:30948620-30949103:+|nuORF	ENST00000550292.1_1_12:30948620-30949103:+|nuORF	ENST00000550292.1_1_12:30948620-30949103:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.2696533203125	2	530.266216	1058.51788	0.99479	0.0005275	4.1869	0.0022202	5.1817	0.0027477	530.2680849686909	137.83	0.6871	136.3	136.07	136.76	-1.5284					28	15	2	0	0	0	0.71191	1	13424	13424		25.574	0	1	36612			47532	13584	39427	39449	50971	50971					-0.009039754396098942
RAPLLTALAL	10	Unmodified	_RAPLLTALAL_					0	0	0			REV__ENST00000530505.1_2_1:207094741-207095257:-|nuORF	REV__ENST00000530505.1_2_1:207094741-207095257:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.326171875	2	519.837134	1037.65972	0.22501	0.00011697	-0.6366	-0.00033093	-0.41159	-0.00021396	519.8366798052908	113.84	1.505	112.39	111.8	113.31	-1.4461					58	29	4	0	0	0	0.027213	1	10625	10625		56.721	0	1	210780	+		47533	27205	39428	39450	50972	50972					0.14239185645010366
RAPLRPLLG	9	Unmodified	_RAPLRPLLG_					0	0	0			REV__ENST00000309993.2_1_3:135914278-135914395:-|nuORF	REV__ENST00000309993.2_1_3:135914278-135914395:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	496.8218078613281	2	496.821818	991.629084	0.21016	0.00010441	-0.44989	-0.00022352	-0.23973	-0.0001191	496.82152545075974	71.168	1.942	68.465	68.025	69.967	-2.7032					97	38	4	0	0	0	0.53957	1	3307	3307		38.806	0	1	703360	+		47534	24332	39429	39451	50973	50973					0.13293452050641008
RAPLSLVVL	9	Unmodified	_RAPLSLVVL_					0	0	0		ENSG00000177096|ENST00000321753|PHETA2	ENSG00000177096|ENST00000321753|PHETA2	ENSG00000177096|ENST00000321753|PHETA2	MULTI-MSMS	OvCa9_classI_Rep3	3	484.3177490234375	2	484.318577	966.622602	-0.71351	-0.00034557	0.30616	0.00014828	-0.40734	-0.00019728	484.318588992095	115.68	1.0854	114.64	114.35	115.44	-1.0414					53	21	3	0	0	0	0.50149	1	8594	8594		42.396	5.237	1	180240			47535	7657	39430	39452	50974	50974					0.13795514099274442
RAPLTLLLL	9	Unmodified	_RAPLTLLLL_					0	0	0			REV__ENSG00000134245|ENST00000369684|WNT2B	REV__ENSG00000134245|ENST00000369684|WNT2B	MULTI-MSMS	OvCa9_classI_Rep3	3	505.3407897949219	2	505.342052	1008.66955	-1.2256	-0.00061935	0.24452	0.00012356	-0.9811	-0.00049579	505.3419478940064	134.8	1.6252	133.68	133.41	135.03	-1.1226					106	32	5	0	0	0	0.28934	2	10910	10910;10936		64.207	1.3648	1	959590	+		47536	19185	39431	39453	50975;50976	50975					0.16556373650416845
RAPPQLLLL	9	Unmodified	_RAPPQLLLL_					0	0	0			REV__nc|ENSG00000154133|Q8WZ75-2|ROBO4	REV__nc|ENSG00000154133|Q8WZ75-2|ROBO4	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.830322265625	2	510.831852	1019.64915	-0.32483	-0.00016593	-0.05809	-2.9674E-05	-0.38292	-0.00019561	510.8317329543334	121.75	1.4156	120.4	120.11	121.52	-1.3479					49	27	2	0	0	0	0.48324	1	11490	11490		44.117	0.49075	1	285320	+		47537	20360	39432	39454	50977	50977					0.14011202990604943
RAPQWRPL	8	Unmodified	_RAPQWRPL_					0	0	0			REV__ENST00000380056.7_1_20:3208478-3209263:-|nuORF	REV__ENST00000380056.7_1_20:3208478-3209263:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.2655029296875	2	512.295968	1022.57738	3.204	0.0016414	-3.8473	-0.001971	-0.64333	-0.00032957	512.7958194867628	88.574	0.20969	88.574	88.467	88.677	0					7	4	2	0	0	0	0.028476	1	9414	9414		42.474	4.6629	1	204320	+		47538	25172	39433	39455	50978	50978					0.0669970835674576
RAPRLPLCL	9	Unmodified	_RAPRLPLCL_					0	0	0			REV__ENST00000547103.5_1_12:80658901-80658961:+|nuORF	REV__ENST00000547103.5_1_12:80658901-80658961:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.2928466796875	2	519.815679	1037.6168	0.73981	0.00038457	4.4213	0.0022983	5.1611	0.0026828	519.818372200806	110.62	0.52682	109.48	109.08	109.61	-1.1444					11	9	2	0	0	0	0.027462	1	7988	7988		25.45	0	1	31589	+		47539	27430	39434	39456	50979	50979					0.09950092315943948
RAPSIPLI	8	Unmodified	_RAPSIPLI_					0	0	0		chr19:43608107-43611989|199|10.48|0.63|4.05|-|0|ZNF428,None|2	chr19:43608107-43611989|199|10.48|0.63|4.05|-|0|ZNF428,None|2	chr19:43608107-43611989|199|10.48|0.63|4.05|-|0|ZNF428,None|2	MULTI-MSMS	OvCa9_classI_Rep4_	4	433.77685546875	2	433.776545	865.538538	1.3486	0.00058498	-1.5043	-0.00065254	-0.15575	-6.7562E-05	433.775716822817	84.294	1.329	81.632	81.265	82.594	-2.6629					64	27	3	0	0	0	0.71369	1	7085	7085		40.573	0	1	776900			47540	416	39435	39457	50980	50980					0.10038983002368695
RAPSNRVKGIP	11	Unmodified	_RAPSNRVKGIP_					0	0	0		ENST00000404751.7_2_22:20100088-20100440:-|nuORF;ENST00000487668.5_1_22:20100088-20100349:-|nuORF;ENST00000480339.1_1_22:20100088-20100591:-|nuORF;ENST00000487378.1_1_22:20100088-20100785:-|nuORF;ENSG00000099899|ENST00000252136|TRMT2A	ENST00000404751.7_2_22:20100088-20100440:-|nuORF	ENST00000404751.7_2_22:20100088-20100440:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	597.8572387695312	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	150.42	1	148.98	148.48	149.48	-1.4344								0	0	0	0.19474	1	14858	14858		24.519	1.9395	1				47541	1985	39436	39458	50981	50981					0.11018705648461946
RAPSSRRRRP	10	Unmodified	_RAPSSRRRRP_					0	0	0		ENST00000370339.7_1_20:61847321-61847444:-|nuORF	ENST00000370339.7_1_20:61847321-61847444:-|nuORF	ENST00000370339.7_1_20:61847321-61847444:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	619.868408203125	2	619.868686	1237.72282	-2.7857	-0.0017268	3.956	0.0024522	1.1703	0.00072543	619.8709153162803	147.4	3.9416	146.45	144.36	148.3	-0.9512					241	78	4	0	0	0	0.75313	1	12572	12572		24.519	0.99649	1	225770			47542	10925	39437	39459	50982	50982					0.11346564205632603
RAPSSRRRRP	10	Unmodified	_RAPSSRRRRP_					0	0	0		ENST00000370339.7_1_20:61847321-61847444:-|nuORF	ENST00000370339.7_1_20:61847321-61847444:-|nuORF	ENST00000370339.7_1_20:61847321-61847444:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.86767578125	2	619.868686	1237.72282	-3.1194	-0.0019336	4.2095	0.0026093	1.0901	0.00067571	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.78463	1	14932	14932		20.947	0.95016	1	806750			47543	10925	39437	39459	50983	50983					0.11346564205632603
RAPTRLDP	8	Unmodified	_RAPTRLDP_					0	0	0		ENST00000527145.1_1_11:44071584-44081467:+|nuORF;ENSG00000205126|ENST00000378832|ACCSL	ENST00000527145.1_1_11:44071584-44081467:+|nuORF	ENST00000527145.1_1_11:44071584-44081467:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	462.28106689453125	2	463.264333	924.514114	-0.19324	-8.9521E-05	-2.9456	-0.0013646	-3.1389	-0.0014541	463.2607481623274	114.65	0.19706	114.53	114.4	114.6	-0.11777					5	3	2	0	0	0	0.028476	1	10914	10914		45.952	5.3793	1	5603.8			47544	9052	39438	39460	50984	50984					0.048837228488423534
RAPVPLGLI	9	Unmodified	_RAPVPLGLI_					0	0	0			REV__ENST00000459625.5_1_12:48179068-48183703:-|nuORF	REV__ENST00000459625.5_1_12:48179068-48183703:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	468.30621337890625	2	468.30547	934.596387	-0.11211	-5.25E-05	-0.42977	-0.00020127	-0.54188	-0.00025376	468.30521098510104	102.7	2.1959	101.18	100.63	102.83	-1.5211					138	41	5	0	0	0	0.34496	1	7112	7112		57.811	0.35863	1	1655400	+		47545	26062	39439	39461	50985	50985					0.12647244927802603
RAQEHLNYV	9	Unmodified	_RAQEHLNYV_					0	0	0		ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;ENST00000528173.5_1_11:46391373-46400221:+|nuORF;nc|ENSG00000149091|Q13574-6|DGKZ;nc|ENSG00000149091|Q13574-7|DGKZ;nc|ENSG00000149091|Q13574-3|DGKZ;ENST00000531879.5_1_11:46367016-46400221:+|nuORF;ENST00000529698.1_1_11:46396583-46398763:+|nuORF;nc|ENSG00000149091|Q13574-1|DGKZ	ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-1|DGKZ	ENSG00000149091|ENST00000456247|DGKZ	MULTI-SECPEP	OvCa9_classI_Rep2	2	564.3314819335938	2	565.291079	1128.56761	-1.0926	-0.00061762	-1.7299	-0.00097789	-2.8224	-0.0015955	565.2898768495335	117.41	0.84297	117.28	117.01	117.86	-0.12869					21	16	2	0	0	0	0.027462	1	11235	11235		42.396	0	1	78882			47546	5440;15083	39440	39462	50986	50986					0.008464755607064944
RAQELEMEM	9	Unmodified	_RAQELEMEM_					0	0	0		nc|ENSG00000149295|P14416-2|DRD2;ENSG00000149295|ENST00000362072|DRD2;nc|ENSG00000149295|P14416-3|DRD2	nc|ENSG00000149295|P14416-2|DRD2	nc|ENSG00000149295|P14416-2|DRD2	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.8128662109375	2	568.757366	1135.50018	-0.89955	-0.00051163	2.7372	0.0015568	1.8377	0.0010452	568.7590697518422	90.804	0.56002	88.723	88.413	88.973	-2.0805					16	10	2	0	0	0	0.02744	1	5660	5660		44.377	3.599	1	16937			47547	5452	39441	39463	50987	50987					-0.06215058756765757
RAQEMGIEV	9	Unmodified	_RAQEMGIEV_					0	0	0		tr|A0A7D6VQZ3|A0A7D6VQZ3_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00360PE=4SV=1	tr|A0A7D6VQZ3|A0A7D6VQZ3_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00360PE=4SV=1	tr|A0A7D6VQZ3|A0A7D6VQZ3_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00360PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.8270874023438	2	516.760766	1031.50698	0.50342	0.00026015	-3.5859	-0.0018531	-3.0825	-0.0015929	516.761213686728	90.956	0.15887	90.956	90.857	91.016	0					5	3	2	0	0	0	0.027461	1	9784	9784		49.442	17.487	1	241170			47548	34881	39442	39464	50988	50988					-0.007513778138672933
RAQEQEEE	8	Unmodified	_RAQEQEEE_					0	0	0			REV__ENSG00000159450|ENST00000614923|TCHH	REV__ENSG00000159450|ENST00000614923|TCHH	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7900390625	2	509.725435	1017.43632	2.1703	0.0011063	-1.9991	-0.001019	0.17121	8.7272E-05	510.226336816901	137.02	0.38374	137.02	136.82	137.21	0					14	7	3	0	0	0	0.028476	1	15986	15986		35.201	20.537	1	31765	+		47549	20616	39443	39465	50989	50989					-0.07170379597846477
RAQGRQRKPAL	11	Unmodified	_RAQGRQRKPAL_					0	0	0			REV__ENST00000310924.6_1_17:77911334-77911703:-|nuORF	REV__ENST00000310924.6_1_17:77911334-77911703:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	640.8893432617188	2	640.886544	1279.75853	4.2244	0.0027074	0.9631	0.00061724	5.1875	0.0033246	640.8870407090299	132.38	1.5362	130.88	130.54	132.07	-1.5015					82	30	4	0	0	0	0.69455	1	12786	12786		31.53	4.4825	1	355310	+		47550	24346	39444	39466	50990	50990					0.12984601662651585
RAQIFANTV	9	Unmodified	_RAQIFANTV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000581937.1_1_18:9678609-9679128:-|nuORF;ENST00000505048.1_1_5:108924410-108924794:+|nuORF;ENST00000506277.1_1_5:36885388-36885895:+|nuORF;ENST00000520711.1_1_8:41368829-41369321:+|nuORF;ENST00000555540.1_1_14:35981656-35982271:-|nuORF;ENST00000508931.1_1_4:40022141-40022315:+|nuORF;ENST00000577198.5_1_17:26603697-26633156:-|nuORF	ENSG00000111057|ENST00000388835|KRT18;ENST00000577198.5_1_17:26603697-26633156:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.8017272949219	2	510.285266	1018.55598	-0.71831	-0.00036654	0.70933	0.00036196	-0.0089845	-4.5846E-06	510.2853169165057	76.557	1.3079	74.703	73.887	75.195	-1.854					42	24	2	0	0	0	0.027461	1	6295	6295		49.442	0	1	91454			47551	2808;13956	39445	39467	50991	50991					0.04744278537373248
RAQKHLLPQ	9	Unmodified	_RAQKHLLPQ_					0	0	0		nc|ENSG00000196136|P01011-3|SERPINA3	nc|ENSG00000196136|P01011-3|SERPINA3	nc|ENSG00000196136|P01011-3|SERPINA3	MULTI-MSMS	OvCa99_classI_Rep5	1	545.8265380859375	2	545.827632	1089.64071	1.7429	0.0009513	-3.2609	-0.0017799	-1.5181	-0.00082861	545.8256638681223	92.097	1.0554	92.097	91.459	92.515	0					53	24	4	0	0	0	0.40667	1	9922	9922		51.335	0	1	3759400			47552	15238	39446	39468	50992	50992					0.09947649074001674
RAQKMTESL	9	Unmodified	_RAQKMTESL_					0	0	0			REV__ENSG00000149548|ENST00000344762|CCDC15	REV__ENSG00000149548|ENST00000344762|CCDC15	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.8129272460938	2	532.281866	1062.54918	-0.56869	-0.00030271	-1.0793	-0.00057451	-1.648	-0.00087721	532.2819551160779	113.35	0.34651	111.91	111.75	112.1	-1.4461					8	6	2	0	0	0	0.027462	1	10521	10521		53.351	0	1	11105	+		47553	20170	39447	39469	50993	50993					0.02040597594486826
RAQMNQIQS	9	Unmodified	_RAQMNQIQS_					0	0	0		ENSG00000133216|ENST00000374630|EPHB2;nc|ENSG00000133216|P29323-3|EPHB2;nc|ENSG00000133216|P29323|EPHB2	ENSG00000133216|ENST00000374630|EPHB2	ENSG00000133216|ENST00000374630|EPHB2	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.2948608398438	2	538.26929	1074.52403	1.0282	0.00055345	0.60409	0.00032516	1.6323	0.00087862	538.2695537985223	90.112	0.89102	88.81	88.285	89.176	-1.302					29	17	2	0	0	0	0.027462	1	7984	7984		35.618	11.416	1	21567			47554	4212	39448	39470	50994	50994					-0.010254572080839353
RAQNRRLLP	9	Unmodified	_RAQNRRLLP_					0	0	0		nc|ENSG00000167103|Q5T9C9-2|PIP5KL1;ENST00000464759.5_1_9:130684128-130689655:-|nuORF;ENSG00000167103|ENST00000388747|PIP5KL1	nc|ENSG00000167103|Q5T9C9-2|PIP5KL1	nc|ENSG00000167103|Q5T9C9-2|PIP5KL1	MULTI-MSMS	OvCa9_classI_Rep3	3	562.3433837890625	2	562.343981	1122.67341	-2.9015	-0.0016316	1.6805	0.00094503	-1.221	-0.00068662	562.3448419475409	142.33	4.504	141.32	140	144.5	-1.0106					205	90	3	0	0	0	0.70177	1	11937	11937		17.365	0.89182	1	106680			47555	6754	39449	39471	50995	50995					0.11697856196838075
RAQPPRLPEDT	11	Unmodified	_RAQPPRLPEDT_					0	0	0		ENST00000257897.7_2_12:58120030-58120555:-|nuORF	ENST00000257897.7_2_12:58120030-58120555:-|nuORF	ENST00000257897.7_2_12:58120030-58120555:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	640.3406982421875	2	640.341301	1278.66805	-2.0951	-0.0013416	1.865	0.0011942	-0.2301	-0.00014734	640.3424545682959	51.93	1.532	49.117	48.7	50.232	-2.8129					86	30	4	0	0	0	0.57194	1	3425	3425		30.318	16.181	1	488120			47556	9831	39450	39472	50996	50996					0.0398608782370502
RAQQLIQT	8	Unmodified	_RAQQLIQT_					0	0	0		ENST00000542173.1_1_17:43195641-43196287:-|nuORF;ENSG00000161714|ENST00000619929|PLCD3	ENST00000542173.1_1_17:43195641-43196287:-|nuORF	ENST00000542173.1_1_17:43195641-43196287:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.7831115722656	2	479.277441	956.540328	-0.32614	-0.00015631	1.7615	0.00084424	1.4353	0.00068793	479.2776935673509	53.851	0.35601	53.851	53.692	54.048	0					14	8	2	0	0	0	0.028476	1	4291	4291		29.15	6.1071	1	247380			47557	6137	39451	39473	50997	50997					0.06031992020314192
RAQQSDVLD	9	Unmodified	_RAQQSDVLD_					0	0	0			REV__tr|A0A553SP40|A0A553SP40_NIACIDNAtopoisomerase1OS=NialliacirculansOX=1397GN=topAPE=3SV=1	REV__tr|A0A553SP40|A0A553SP40_NIACIDNAtopoisomerase1OS=NialliacirculansOX=1397GN=topAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.2830200195312	2	516.259445	1030.50434	1.0113	0.00052208	0.91115	0.00047039	1.9224	0.00099247	516.2587636787749	106.98	0.77626	105.71	105.32	106.1	-1.267					27	15	3	0	0	0	0.027462	1	7608	7608		51.335	7.2187	1	40038	+		47558	30488	39452	39474	50998	50998					-0.009695099471855428
RAQVGAKLHSK	11	Unmodified	_RAQVGAKLHSK_					0	0	0			REV__ENSG00000101825|ENST00000217939|MXRA5	REV__ENSG00000101825|ENST00000217939|MXRA5	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8562622070312	2	597.856921	1193.69929	-0.38237	-0.0002286	-0.55263	-0.00033039	-0.935	-0.00055899	597.8564103488146	145.14	4.0194	143.71	141.51	145.53	-1.4357					229	77	4	0	0	0	0.7246	1	14135	14135		20.837	0.84038	1	217250	+		47559	17519	39453	39475	50999	50999					0.11018705648439209
RARAAKELPE	10	Unmodified	_RARAAKELPE_					0	0	0			REV__ENSG00000197594|ENST00000647893|ENPP1	REV__ENSG00000197594|ENST00000647893|ENPP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.7644653320312	2	570.827829	1139.64111	-0.84588	-0.00048285	4.3006	0.0024549	3.4547	0.001972	570.8301447066814	41.961	0.47637	41.961	41.766	42.242	0					21	10	3	0	0	0	0.026826	1	2644	2644		44.377	19.858	1	144340	+		47560	22937	39454	39476	51000	51000					0.07687024003189435
RARAKAKRE	9	Unmodified	_RARAKAKRE_					0	0	0		nc|ENSG00000133710|Q9NQ38-3|SPINK5;ENSG00000133710|ENST00000256084|SPINK5;nc|ENSG00000133710|Q9NQ38-2|SPINK5	nc|ENSG00000133710|Q9NQ38-3|SPINK5	nc|ENSG00000133710|Q9NQ38-3|SPINK5	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7617797851562	2	543.336156	1084.65776	-1.0189	-0.0005536	2.4745	0.0013445	1.4556	0.00079088	543.3374539682145	36.908	0.36252	36.908	36.751	37.114	0					17	7	3	0	0	0	0.027462	1	1966	1966		26.693	13.881	1	171980			47561	4234	39455	39477	51001	51001					0.11881569679781023
RARALPARR	9	Unmodified	_RARALPARR_					0	0	0		ENST00000377780.8_1_13:73355758-73356004:-|nuORF	ENST00000377780.8_1_13:73355758-73356004:-|nuORF	ENST00000377780.8_1_13:73355758-73356004:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.8152465820312	2	533.838865	1065.66318	-0.84709	-0.00045221	3.2392	0.0017292	2.3921	0.001277	534.3422677916028	75.341	0.5291	72.11	71.773	72.302	-3.2308					13	10	2	0	0	0	0.027462	1	5950	5950		37.159	4.3467	1	25153			47562	11093	39456	39478	51002	51002					0.13297293262235144
RARALPARR	9	Unmodified	_RARALPARR_					0	0	0		ENST00000377780.8_1_13:73355758-73356004:-|nuORF	ENST00000377780.8_1_13:73355758-73356004:-|nuORF	ENST00000377780.8_1_13:73355758-73356004:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	533.838865	1065.66318	-1.4138	-0.00075476	3.5746	0.0019082	2.1607	0.0011535	533.8405966715053	74.059	0.63017	72.088	71.798	72.429	-1.9711	0.06092	0.00043802	NaN	37.159	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26763			47563	11093	39456	39478							0.13297293262235144
RARALPARR	9	Unmodified	_RARALPARR_					0	0	0		ENST00000377780.8_1_13:73355758-73356004:-|nuORF	ENST00000377780.8_1_13:73355758-73356004:-|nuORF	ENST00000377780.8_1_13:73355758-73356004:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	533.838865	1065.66318	0.29837	0.00015928	2.4661	0.0013165	2.7644	0.0014758	533.8399132723538	74.294	0.84219	71.883	71.548	72.39	-2.4106	-0.14377	-0.00074549	NaN	37.159	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29065			47564	11093	39456	39478							0.13297293262235144
RARALPQHVD	10	Unmodified	_RARALPQHVD_					0	0	0			REV__ENST00000487903.5_1_13:113536381-113537092:+|nuORF	REV__ENST00000487903.5_1_13:113536381-113537092:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	580.8615112304688	2	581.825621	1161.63669	-0.089548	-5.2102E-05	1.0704	0.00062277	0.98083	0.00057067	581.8268689064099	110.09	1.4101	108.49	107.5	108.91	-1.6011					42	26	3	0	0	0	0.026681	1	10072	10072		44.377	14.059	1	21976	+		47565	26612	39457	39479	51003	51003					0.062335595802551325
RARAVLAVH	9	Unmodified	_RARAVLAVH_					0	0	0		nc|ENSG00000198933|A7MCY6-2|TBKBP1	nc|ENSG00000198933|A7MCY6-2|TBKBP1	nc|ENSG00000198933|A7MCY6-2|TBKBP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.2979736328125	2	496.809242	991.603932	-0.070293	-3.4922E-05	0.31199	0.000155	0.2417	0.00012008	496.80870698503605	68.912	0.49148	65.422	65.163	65.654	-3.4902					14	9	2	0	0	0	0.027462	1	5105	5105		18.324	0	1	22398			47566	15263	39458	39480	51004	51004					0.10779397248074929
RARAVLAVH	9	Unmodified	_RARAVLAVH_					0	0	0		nc|ENSG00000198933|A7MCY6-2|TBKBP1	nc|ENSG00000198933|A7MCY6-2|TBKBP1	nc|ENSG00000198933|A7MCY6-2|TBKBP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	496.809242	991.603932	-1.1815	-0.00058699	2.0618	0.0010243	0.88031	0.00043734	496.81016463734034	68.007	0.68852	65.346	65.041	65.729	-2.661	-0.038192	0.00030458	NaN	18.324	22	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21103			47567	15263	39458	39480							0.10779397248074929
RARCVPPL	8	Unmodified	_RARCVPPL_					0	0	0			REV__nc|ENSG00000183421|P57078|RIPK4	REV__nc|ENSG00000183421|P57078|RIPK4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.79852294921875	2	456.265822	910.517091	0.10301	4.6998E-05	-3.6086	-0.0016465	-3.5056	-0.0015995	456.2637319478921	105.57	0.6518	103.56	103.35	104	-2.0161					18	12	2	0	0	0	0.028476	1	9633	9633		62.978	2.0065	1	18269	+		47568	29048	39459	39481	51005	51005					0.058252747020105744
RARFGTLL	8	Unmodified	_RARFGTLL_					0	0	0		ENSG00000197887|ENST00000641683|OR1S2;nc|ENSG00000197887|Q8NGQ3|OR1S2	ENSG00000197887|ENST00000641683|OR1S2	ENSG00000197887|ENST00000641683|OR1S2	MULTI-MSMS	OvCa99_classI_Rep5	1	467.28656005859375	2	467.285069	932.555585	-0.28542	-0.00013337	0.16852	7.8746E-05	-0.1169	-5.4626E-05	467.2849689879764	53.149	0.64854	53.149	52.915	53.564	0					37	14	4	0	0	0	0.73288	1	4205	4205		35.201	1.6851	1	2341700			47569	8758	39460	39482	51006	51006					0.08660903608188164
RARFHPPLHL	10	Unmodified	_RARFHPPLHL_					0	0	0			REV__chr10:79838586-79838780|98|16.33|0.0|20.64|+|1|NUTM2E,NUTM2E|1	REV__chr10:79838586-79838780|98|16.33|0.0|20.64|+|1|NUTM2E,NUTM2E|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.2621765136719	3	415.243874	1242.70979	-0.0086143	-3.577E-06	3.9188	0.0016272	3.9102	0.0016237	415.2454258910765	21.261	0.52251	19.923	19.697	20.22	-1.3386					14	10	2	0	0	0	0.027214	1	130	130		21.686	6.9921	1	18228	+		47570	15852	39461	39483	51007	51007					0.09814733093548966
RARFLFPLN	9	Unmodified	_RARFLFPLN_					0	0	0		nc|ENSG00000135503|P36896-4|ACVR1B	nc|ENSG00000135503|P36896-4|ACVR1B	nc|ENSG00000135503|P36896-4|ACVR1B	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3300170898438	2	567.33255	1132.65055	-2.3399	-0.0013275	-2.5474	-0.0014452	-4.8872	-0.0027727	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.67509	1	14608	14608		23.042	1.0826	1	241060			47571	15033	39462	39484	51008	51008					0.08952837079368692
RARFPKLL	8	Unmodified	_RARFPKLL_					0	0	0			REV__ENSG00000078589|ENST00000171757|P2RY10	REV__ENSG00000078589|ENST00000171757|P2RY10	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.7754821777344	2	500.824361	999.634169	0.44123	0.00022098	-1.1776	-0.00058975	-0.73633	-0.00036877	500.8235406010077	72.323	0.52403	72.323	72.086	72.61	0					33	12	4	0	0	0	0.028476	1	7061	7061		1.0954	0	1	1292600	+		47572	17025	39463	39485	51009	51009					0.1343375591327458
RARHRDQV	8	Unmodified	_RARHRDQV_					0	0	0			REV__ENSG00000082996|ENST00000392894|RNF13	REV__ENSG00000082996|ENST00000392894|RNF13	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.79833984375	2	519.289205	1036.56386	-0.1601	-8.314E-05	-0.60152	-0.00031236	-0.76162	-0.0003955	519.7901917160083	46.291	0.61219	46.291	45.8	46.412	0					16	13	2	0	0	0	0.028476	1	3200	3200		65.803	0	1	151600	+		47573	17092	39464	39486	51010	51010					0.047038505775162776
RARIIISD	8	Unmodified	_RARIIISD_					0	0	0		ENST00000518084.5_1_8:32579429-32579531:+|nuORF	ENST00000518084.5_1_8:32579429-32579531:+|nuORF	ENST00000518084.5_1_8:32579429-32579531:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	472.2875061035156	2	472.287808	942.561064	-3.3723	-0.0015927	3.3552	0.0015846	-0.017057	-8.0558E-06	472.2892568382278	150.85	1.4757	150.62	150.22	151.7	-0.22697					85	29	4	0	0	0	0.73626	1	15282	15282		33.516	4.366	1	396600			47574	13068	39465	39487	51011	51011					0.08748582400005489
RARIQKNITLQ	11	Unmodified	_RARIQKNITLQ_					0	0	0		ENST00000368606.7_1_6:116784602-116784680:+|nuORF	ENST00000368606.7_1_6:116784602-116784680:+|nuORF	ENST00000368606.7_1_6:116784602-116784680:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	447.25140380859375	3	447.608882	1339.80482	-0.40442	-0.00018102	0.54241	0.00024279	0.13799	6.1765E-05	447.60903688165774	36.767	0.44781	36.767	36.575	37.023	0					21	9	3	0	0	0	0.026302	1	1980	1980		12.433	7.5467	1	223290			47575	10877	39466	39488	51012	51012					0.1485062177407599
RARKLAEQEL	10	Unmodified	_RARKLAEQEL_					0	0	0		ENSG00000109063|ENST00000583535|MYH3;MAP2K4-MYH3|1|fusion	ENSG00000109063|ENST00000583535|MYH3	ENSG00000109063|ENST00000583535|MYH3	MULTI-MSMS	OvCa9_classI_Rep2	2	405.23883056640625	3	405.238566	1212.69387	1.178	0.00047739	-1.1193	-0.00045358	0.058751	2.3808E-05	405.2380980368008	45.582	1.7446	42.872	42.448	44.192	-2.7097					104	34	5	0	0	0	0.67987	1	2698	2698		32.751	2.4328	1	1021000			47576	2693	39467	39489	51013	51013					0.09602982065962351
RARKSAASGPP	11	Unmodified	_RARKSAASGPP_					0	0	0			REV__nc|ENSG00000120093|P14651-3|HOXB3	REV__nc|ENSG00000120093|P14651-3|HOXB3	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.3135375976562	2	549.312346	1096.61014	0.63087	0.00034654	-0.97613	-0.0005362	-0.34526	-0.00018966	549.3116312947706	37.41	1.3447	34.518	34.142	35.487	-2.8925					68	26	4	0	0	0	0.69808	1	1377	1377		30.318	0	1	412270	+		47577	18484	39468	39490	51014	51014					0.06569870688940682
RARLGSSIVL	10	Unmodified	_RARLGSSIVL_					0	0	0			REV__ENST00000528856.5_1_11:34073295-34118749:+|nuORF	REV__ENST00000528856.5_1_11:34073295-34118749:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	535.8217163085938	2	536.33529	1070.65603	-1.3621	-0.00073053	1.5228	0.00081675	0.16076	8.6219E-05	536.335955314737	58.174	0.65441	55.381	54.972	55.627	-2.7921					15	12	2	0	0	0	0.026553	1	4151	4151		47.657	0	1	15996	+		47578	27138	39469	39491	51015	51015					0.12352515871180003
RARLKTLG	8	Unmodified	_RARLKTLG_					0	0	0			REV__PLCD3|p.Q198Vfs*40|1|0.06|ENSG00000161714|chr17:45120418-45120419|-/ACACGTTACTATCCTGACA|frameshift_variant	REV__PLCD3|p.Q198Vfs*40|1|0.06|ENSG00000161714|chr17:45120418-45120419|-/ACACGTTACTATCCTGACA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	457.8021545410156	2	457.798343	913.582134	2.7247	0.0012474	4.1821	0.0019146	6.9068	0.0031619	457.8000622031771	96.427	0.66978	96.427	96.168	96.838	0					34	15	3	0	0	0	0.67745	1	10567	10567		47.916	7.343	1	813720	+		47579	20706	39470	39492	51016	51016					0.1218859249952402
RARLKTLG	8	Unmodified	_RARLKTLG_					0	0	0			REV__PLCD3|p.Q198Vfs*40|1|0.06|ENSG00000161714|chr17:45120418-45120419|-/ACACGTTACTATCCTGACA|frameshift_variant	REV__PLCD3|p.Q198Vfs*40|1|0.06|ENSG00000161714|chr17:45120418-45120419|-/ACACGTTACTATCCTGACA|frameshift_variant	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	457.798343	913.582134	2.7247	0.0012474	4.1821	0.0019146	6.9068	0.0031619	457.8000622031771	96.427	0.66978	96.427	96.168	96.838	0	0	0	NaN	47.916	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	813720	+		47580	20706	39470	39492							0.1218859249952402
RARLSGLFKAH	11	Unmodified	_RARLSGLFKAH_					0	0	0			REV__nc|ENSG00000114650|Q12770-3|SCAP	REV__nc|ENSG00000114650|Q12770-3|SCAP	MULTI-SECPEP	OvCa99_classI_Rep5	1	628.2900390625	2	628.372738	1254.73092	1.0752	0.00067563	2.8594	0.0017968	3.9346	0.0024724	628.3743592320754	131.76	1.2657	131.76	131.43	132.7	0					43	26	2	0	0	0	0.02557	1	15364	15364		24.519	0	1	687160	+		47581	18194	39471	39493	51017	51017					0.11374698402414651
RARLSPATL	9	Unmodified	_RARLSPATL_					0	0	0			REV__ENST00000560763.5_2_14:103800597-103802258:+|nuORF	REV__ENST00000560763.5_2_14:103800597-103802258:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	492.80133056640625	2	492.801083	983.587613	-0.22138	-0.00010909	-0.17074	-8.414E-05	-0.39212	-0.00019324	492.80100049987163	46.915	1.4428	46.915	46.369	47.812	0					65	32	4	0	0	0	0.5811	1	3358	3358		34.173	2.2177	1	4754600	+		47582	27625	39472	39494	51018	51018					0.09516271291329303
RARPPVVL	8	Unmodified	_RARPPVVL_					0	0	0		ENST00000487959.5_1_2:148602122-148602257:+|nuORF	ENST00000487959.5_1_2:148602122-148602257:+|nuORF	ENST00000487959.5_1_2:148602122-148602257:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	453.74334716796875	2	454.295436	906.57632	0.089511	4.0665E-05	-0.64419	-0.00029265	-0.55468	-0.00025199	454.2949726752822	63.644	0.38243	60.169	59.868	60.251	-3.475					10	7	2	0	0	0	0.028476	1	4465	4465		20.482	0	1	17210			47583	12658	39473	39495	51019	51019					0.11929493987850037
RARPWRVA	8	Unmodified	_RARPWRVA_					0	0	0		ENST00000005340.9_1_17:7137535-7137610:-|nuORF	ENST00000005340.9_1_17:7137535-7137610:-|nuORF	ENST00000005340.9_1_17:7137535-7137610:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.28302001953125	2	506.301585	1010.58862	-0.31059	-0.00015725	-1.9245	-0.00097439	-2.2351	-0.0011316	506.3003981675969	31.507	0.79011	28.798	28.641	29.431	-2.7097					27	15	2	0	0	0	0.028476	1	947	947		14.664	0	1	48504			47584	9623	39474	39496	51020	51020					0.08374530450885231
RARRDDPHSL	10	Unmodified	_RARRDDPHSL_					0	0	0		ENSG00000155918|ENST00000367341|RAET1L	ENSG00000155918|ENST00000367341|RAET1L	ENSG00000155918|ENST00000367341|RAET1L	MULTI-SECPEP	OvCa9_classI_Rep3	3	611.2981567382812	2	611.823609	1221.63267	0.57849	0.00035393	1.3806	0.00084466	1.9591	0.0011986	612.3273177746076	96.231	0.29917	94.403	94.172	94.471	-1.8286					6	5	2	0	0	0	0.026826	1	6299	6299		29.17	10.908	1	6645.5			47585	5809	39475	39497	51021	51021					0.030714700865473787
RARRNSLRI	9	Unmodified	_RARRNSLRI_					0	0	0		ENSG00000170128|ENST00000304244|GPR25	ENSG00000170128|ENST00000304244|GPR25	ENSG00000170128|ENST00000304244|GPR25	MULTI-MSMS	OvCa99_classI_Rep5	1	571.3548583984375	2	571.35488	1140.69521	-0.53498	-0.00030566	0.18497	0.00010568	-0.35001	-0.00019998	571.3549469312923	29.374	0.4486	29.374	29.087	29.536	0					17	8	3	0	0	0	0.46356	1	1044	1044		45.972	10.354	1	167450			47586	7075	39476	39498	51022	51022					0.13048660945401025
RARRRPPI	8	Unmodified	_RARRRPPI_					0	0	0			REV__ENST00000157600.7_2_3:8609280-8609388:+|nuORF	REV__ENST00000157600.7_2_3:8609280-8609388:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	511.3267517089844	2	511.328134	1020.64171	-3.9215	-0.0020052	2.3626	0.001208	-1.559	-0.00079714	511.32921715256015	153.82	1.2958	153.59	153.28	154.58	-0.22696					76	27	4	0	0	0	0.75991	1	15677	15677		21.702	0	1	348680	+		47587	23681	39477	39499	51023	51023					0.13221908233549584
RARRRVQRSA	10	Unmodified	_RARRRVQRSA_					0	0	0			REV__nc|ENSG00000182325|Q8N531-2|FBXL6	REV__nc|ENSG00000182325|Q8N531-2|FBXL6	MULTI-MSMS	OvCa9_classI_Rep4_	4	628.3826293945312	2	628.38196	1254.74937	-1.7019	-0.0010694	2.399	0.0015075	0.69714	0.00043807	628.3832559511075	147.74	1.901	146.3	145.18	147.08	-1.435					72	37	2	0	0	0	0.72319	1	14585	14585		27.882	2.3082	1	277210	+		47588	22280	39478	39500	51024	51024					0.1321825309698852
RARSPERR	8	Unmodified	_RARSPERR_					0	0	0		nc|ENSG00000151276|Q96QZ7-7|MAGI1;nc|ENSG00000151276|Q96QZ7-6|MAGI1;ENSG00000151276|ENST00000402939|MAGI1;nc|ENSG00000151276|Q96QZ7|MAGI1	nc|ENSG00000151276|Q96QZ7-7|MAGI1	nc|ENSG00000151276|Q96QZ7-7|MAGI1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.301025390625	2	514.29703	1026.57951	-1.438	-0.00073958	1.2015	0.00061793	-0.23653	-0.00012165	514.2973022096985	50.611	0.77208	47.438	47.1	47.872	-3.1734					25	14	3	0	0	0	0.028476	1	2933	2933		25.574	0	1	88722			47589	5545	39479	39501	51025	51025					0.06728137094546582
RARTPVPA	8	Unmodified	_RARTPVPA_					0	0	0			REV__ENST00000534270.1_1_8:145742254-145742921:-|nuORF	REV__ENST00000534270.1_1_8:145742254-145742921:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.7818298339844	2	434.261594	866.508634	0.81255	0.00035286	-0.9638	-0.00041854	-0.15125	-6.5683E-05	434.2610268615206	56.806	1.0678	53.461	53.07	54.138	-3.3449					36	20	2	0	0	0	0.028476	1	3706	3706		18.324	3.6603	1	69447	+		47590	27266	39480	39502	51026	51026					0.0700404405702102
RARTPVPA	8	Unmodified	_RARTPVPA_					0	0	0			REV__ENST00000534270.1_1_8:145742254-145742921:-|nuORF	REV__ENST00000534270.1_1_8:145742254-145742921:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	434.261594	866.508634	-0.71403	-0.00031007	0.80905	0.00035134	0.095026	4.1266E-05	434.2618454766002	56.126	0.89178	53.322	52.978	53.87	-2.804	-0.069478	0.00071354	NaN	12.207	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22647	+		47591	27266	39480	39502							0.0700404405702102
RARVVPAS	8	Unmodified	_RARVVPAS_					0	0	0			REV__nc|ENSG00000132879|Q9H4M3-2|FBXO44	REV__nc|ENSG00000132879|Q9H4M3-2|FBXO44	MULTI-MSMS	OvCa9_classI_Rep2	2	428.2615966796875	2	428.261594	854.508634	-2.1797	-0.00093349	2.171	0.00092976	-0.0087153	-3.7324E-06	428.2624599299376	144.02	1.6837	143.79	143.2	144.88	-0.22697					114	33	5	0	0	0	0.75426	1	14475	14475		18.324	0.95945	1	330270	+		47592	28853	39481	39503	51027	51027					0.0755604405703707
RASALRHEEQ	10	Unmodified	_RASALRHEEQ_					0	0	0		nc|ENSG00000104067|Q07157-2|TJP1;nc|ENSG00000104067|Q07157|TJP1;ENSG00000104067|ENST00000614355|TJP1;TJP1|p.H1178Qfs*10|1|0.4|ENSG00000104067|chr15:29718592-29718608|TGGGCCCTGCTGAAGGG/-|frameshift_variant	nc|ENSG00000104067|Q07157-2|TJP1	nc|ENSG00000104067|Q07157-2|TJP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	599.2905883789062	2	598.810168	1195.60578	2.3896	0.0014309	3.4454	0.0020632	5.8351	0.0034941	598.8121718888393	102.83	0.54753	102.83	102.63	103.18	0					28	12	3	0	0	0	0.026867	1	11478	11478		42.864	0	1	732020			47593	2351	39482	39504	51028	51028					0.015803614753849615
RASFHLTLTL	10	Unmodified	_RASFHLTLTL_					0	0	0		ENST00000506857.5_1_5:61643028-61643980:+|nuORF	ENST00000506857.5_1_5:61643028-61643980:+|nuORF	ENST00000506857.5_1_5:61643028-61643980:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.2764892578125	2	579.835123	1157.65569	1.0849	0.00062909	-1.5105	-0.00087585	-0.42557	-0.00024676	579.8346793237367	111.74	0.96501	111.74	111.47	112.43	0					33	20	2	0	0	0	0.026714	1	12716	12716		51.193	0	1	98862			47594	12916	39483	39505	51029	51029					0.08317096151336045
RASFPLLSP	9	Unmodified	_RASFPLLSP_					0	0	0			REV__ENST00000263657.6_1_2:68401970-68402120:+|nuORF	REV__ENST00000263657.6_1_2:68401970-68402120:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.7345275878906	2	494.284734	986.554916	-0.062874	-3.1078E-05	0.33734	0.00016674	0.27446	0.00013566	494.28477117215925	71.723	0.49338	71.723	71.507	72	0					23	11	3	0	0	0	0.027462	1	6922	6922		37.812	13.609	1	631740	+		47595	24005	39484	39506	51030	51030					0.06110064168478857
RASIIFSVV	9	Unmodified	_RASIIFSVV_					0	0	0			REV__tr|A0A7D6VRU4|A0A7D6VRU4_9CLOTDNA-(apurinicorapyrimidinicsite)lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20295PE=3SV=1	REV__tr|A0A7D6VRU4|A0A7D6VRU4_9CLOTDNA-(apurinicorapyrimidinicsite)lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20295PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	496.3016662597656	2	496.300384	990.586216	1.2461	0.00061845	-1.3256	-0.00065787	-0.079436	-3.9424E-05	496.29955522437075	123.03	1.3483	121.99	121.68	123.03	-1.0377					64	25	3	0	0	0	0.64427	1	9521	9521		26.693	2.1737	1	228980	+		47596	31445	39485	39507	51031	51031					0.09054637202564209
RASLKHLRTR	10	Unmodified	_RASLKHLRTR_					0	0	0			REV__nc|ENSG00000117682|Q86SQ9-3|DHDDS	REV__nc|ENSG00000117682|Q86SQ9-3|DHDDS	MULTI-SECPEP	OvCa99_classI_Rep5	1	618.820068359375	2	619.383637	1236.75272	0.81861	0.00050703	-0.014901	-9.2292E-06	0.80371	0.0004978	619.8844644773075	142.72	0.19777	142.72	142.64	142.83	0					5	3	2	0	0	0	0.027145	1	16676	16676		12.812	0	1	23571	+		47597	18364	39486	39508	51032	51032					0.14381503150957542
RASLPLLLIP	10	Unmodified	_RASLPLLLIP_					0	0	0		ENST00000577171.1_1_16:73265992-73266226:+|nuORF	ENST00000577171.1_1_16:73265992-73266226:+|nuORF	ENST00000577171.1_1_16:73265992-73266226:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	546.8594360351562	2	546.860609	1091.70667	0.52485	0.00028702	-1.078	-0.00058951	-0.55314	-0.00030249	546.859996171532	132.1	1.0759	131.88	131.4	132.47	-0.22696					63	21	4	0	0	0	0.59703	1	13044	13044		42.396	1.618	1	124730			47598	13955	39487	39509	51033	51033					0.16448045196193561
RASLVRPGPAL	11	Unmodified	_RASLVRPGPAL_					0	0	0			REV__ENST00000572240.5_1_16:3080380-3081406:-|nuORF	REV__ENST00000572240.5_1_16:3080380-3081406:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	568.8462524414062	2	568.848564	1135.68258	-0.94065	-0.00053509	-2.591	-0.0014739	-3.5317	-0.002009	568.8468987403617	122.03	1.7301	121.81	120.93	122.66	-0.21803					88	34	3	0	0	0	0.68021	1	11800	11800		36.447	1.2947	1	269790	+		47599	27751	39488	39510	51034	51034					0.12016204762517191
RASPLLLLL	9	Unmodified	_RASPLLLLL_					0	0	0		ENSG00000050393|ENST00000379170|MCUR1;nc|ENSG00000050393|Q96AQ8-2|MCUR1	ENSG00000050393|ENST00000379170|MCUR1	ENSG00000050393|ENST00000379170|MCUR1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.33343505859375	2	498.334227	994.653902	1.2643	0.00063007	-1.8659	-0.00092985	-0.60157	-0.00029978	498.3332884380841	124.71	3.4398	123.66	123.27	126.71	-1.0519					179	65	5	0	0	0	0.24951	1	9694	9694		68.787	0	1	3929400			47600	1179	39489	39511	51035	51035					0.15636087133384535
RASPLLLLL	9	Unmodified	_RASPLLLLL_					0	0	0		ENSG00000050393|ENST00000379170|MCUR1;nc|ENSG00000050393|Q96AQ8-2|MCUR1	ENSG00000050393|ENST00000379170|MCUR1	ENSG00000050393|ENST00000379170|MCUR1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3345031738281	2	498.334227	994.653902	-0.6989	-0.00034829	0.47295	0.00023569	-0.22596	-0.0001126	498.33435878229506	133.81	2.0717	132.69	132.27	134.34	-1.1226					102	41	4	0	0	0	0.33652	1	10786	10786		58.782	7.4465	1	981140			47601	1179	39489	39511	51036	51036					0.15636087133384535
RASPNPQLL	9	Unmodified	_RASPNPQLL_					0	0	0			REV__ENSG00000148341|ENST00000372564|SH3GLB2	REV__ENSG00000148341|ENST00000372564|SH3GLB2	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.8309020996094	2	498.285266	994.555979	0.40936	0.00020398	-0.8736	-0.0004353	-0.46424	-0.00023132	498.28471204404184	63.305	0.58918	63.305	63.058	63.648	0					37	14	4	0	0	0	0.02744	1	5678	5678		62.107	0	1	2031000	+		47602	20103	39490	39512	51037	51037					0.05848278537382612
RASPRALPS	9	Unmodified	_RASPRALPS_					0	0	0		ENST00000541264.2_2_14:59105725-59105827:+|nuORF	ENST00000541264.2_2_14:59105725-59105827:+|nuORF	ENST00000541264.2_2_14:59105725-59105827:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	477.7768859863281	2	477.777608	953.540663	0.30924	0.00014775	-0.9987	-0.00047716	-0.68946	-0.00032941	477.7771636832581	43.542	2.3879	40.832	40.509	42.897	-2.7097					104	47	3	0	0	0	0.37135	1	2409	2409		54.776	0	1	3363800			47603	13465	39491	39513	51038	51038					0.0620341174017085
RASQVFIL	8	Unmodified	_RASQVFIL_					0	0	0			REV__ENST00000507522.1_1_5:251563-256495:+|nuORF	REV__ENST00000507522.1_1_5:251563-256495:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.2802734375	2	467.279452	932.544351	0.4896	0.00022878	-0.74161	-0.00034654	-0.252	-0.00011776	467.27897096327047	98.074	0.70513	95.695	95.418	96.124	-2.3786					45	13	4	0	0	0	0.66992	1	8710	8710		49.442	4.9105	1	566800	+		47604	26899	39492	39514	51039	51039					0.07538081514042005
RASRPAAPPP	10	Unmodified	_RASRPAAPPP_					0	0	0		ENST00000405914.1_1_2:26204855-26205579:-|nuORF	ENST00000405914.1_1_2:26204855-26205579:-|nuORF	ENST00000405914.1_1_2:26204855-26205579:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.2886047363281	2	510.290882	1018.56721	2.2244	0.0011351	2.1198	0.0010817	4.3443	0.0022168	510.2918578168107	77.242	0.46158	77.242	76.961	77.422	0					16	10	2	0	0	0	0.026994	1	7798	7798		40.778	8.8233	1	353940			47605	11476	39493	39515	51040	51040					0.058671006315080376
RASRWKWRRL	10	Unmodified	_RASRWKWRRL_					0	0	0			REV__ENST00000476266.5_1_19:40748442-40748610:-|nuORF	REV__ENST00000476266.5_1_19:40748442-40748610:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	472.2836608886719	3	472.281211	1413.8218	-0.088609	-4.1848E-05	3.3955	0.0016036	3.3069	0.0015618	472.2826468257333	73.189	0.80232	73.189	72.915	73.717	0					56	19	4	0	0	0	0.73063	1	7176	7176		27.047	1.9213	1	5950500	+		47606	26369	39494	39516	51041	51041					0.13144587170540944
RASSLMCFSCL	11	Unmodified	_RASSLMCFSCL_					0	0	0		ENSG00000160932|ENST00000292494|LY6E	ENSG00000160932|ENST00000292494|LY6E	ENSG00000160932|ENST00000292494|LY6E	MULTI-SECPEP	OvCa9_classI_Rep2	2	608.9852905273438	2	609.277412	1216.54027	-0.24342	-0.00014831	-4.0749	-0.0024827	-4.3183	-0.0026311	609.274834791188	79.279	0.77464	77.539	76.999	77.774	-1.7398					17	14	2	0	0	0	0.025277	1	6631	6631		47.96	20.077	1	16330			47607	6104	39495	39517	51042	51042					-0.0593383535783687
RASSLMCFSCL	11	Unmodified	_RASSLMCFSCL_					0	0	0		ENSG00000160932|ENST00000292494|LY6E	ENSG00000160932|ENST00000292494|LY6E	ENSG00000160932|ENST00000292494|LY6E	MULTI-MATCH	OvCa99_classI_Rep5	1		2	609.277412	1216.54027	2.2459	0.0013683	-2.6449	-0.0016115	-0.39902	-0.00024311	609.27611080171	77.439	0.37718	77.439	77.252	77.629	0	-0.049796	0.0011884	NaN	47.96	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	504600			47608	6104	39495	39517							-0.0593383535783687
RASSPLPRQD	10	Unmodified	_RASSPLPRQD_					0	0	0		ENST00000409835.5_1_2:63587012-63815411:-|nuORF;nc|ENSG00000143951|O95876-2|WDPCP;ENSG00000143951|ENST00000272321|WDPCP	ENST00000409835.5_1_2:63587012-63815411:-|nuORF;ENSG00000143951|ENST00000272321|WDPCP	ENST00000409835.5_1_2:63587012-63815411:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	563.3490600585938	2	563.801811	1125.58907	-0.74513	-0.0004201	-1.6598	-0.00093578	-2.4049	-0.0013559	563.8008170731827	89.647	0.61548	87.567	87.337	87.953	-2.0805					15	11	2	0	0	0	0.026931	1	5510	5510		37.812	1.3648	1	28878			47609	11536;5111	39496	39518	51043	51043					0.031298605894335196
RASSPLPRQD	10	Unmodified	_RASSPLPRQD_					0	0	0		ENST00000409835.5_1_2:63587012-63815411:-|nuORF;nc|ENSG00000143951|O95876-2|WDPCP;ENSG00000143951|ENST00000272321|WDPCP	ENST00000409835.5_1_2:63587012-63815411:-|nuORF;ENSG00000143951|ENST00000272321|WDPCP	ENST00000409835.5_1_2:63587012-63815411:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	563.801811	1125.58907	2.177	0.0012274	4.0359	0.0022755	6.2129	0.0035028	563.8038459138047	87.542	0.90645	87.542	87.096	88.003	0	-0.012487	0.0023762	NaN	37.812	39	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1234700			47610	11536;5111	39496	39518							0.031298605894335196
RASSRYGPPVV	11	Unmodified	_RASSRYGPPVV_					0	0	0			REV__nc|ENSG00000079841|Q86UR5-12|RIMS1	REV__nc|ENSG00000079841|Q86UR5-12|RIMS1	MULTI-SECPEP	OvCa9_classI_Rep3	3	594.853515625	2	594.827829	1187.64111	0.10488	6.2386E-05	-1.3339	-0.00079344	-1.229	-0.00073105	594.827006754575	78.457	1.2397	76.104	75.8	77.04	-2.3527					60	24	4	0	0	0	0.025861	1	4155	4155		12.207	3.9716	1	151890	+		47611	28739	39497	39519	51044	51044					0.05479024003170707
RASSRYGPPVV	11	Unmodified	_RASSRYGPPVV_					0	0	0			REV__nc|ENSG00000079841|Q86UR5-12|RIMS1	REV__nc|ENSG00000079841|Q86UR5-12|RIMS1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	594.827829	1187.64111	0.20851	0.00012403	-2.2871	-0.0013604	-2.0785	-0.0012364	594.8265040961282	79.145	1.1415	76.394	76.038	77.179	-2.7514	0.085747	-0.0012176	NaN	7.8045	46	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220010	+		47612	28739	39497	39519							0.05479024003170707
RASVEGPLAI	10	Unmodified	_RASVEGPLAI_					0	0	0			REV__nc|ENSG00000157106|Q96Q15-4|SMG1	REV__nc|ENSG00000157106|Q96Q15-4|SMG1	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.7934265136719	2	506.792924	1011.57129	0.46064	0.00023345	-2.7243	-0.0013806	-2.2636	-0.0011472	506.7916091002206	86.767	1.6406	84.14	83.363	85.004	-2.6269					50	32	2	0	0	0	0.39172	1	7360	7360		69.628	0	1	330230	+		47613	20512	39498	39520	51045	51045					0.06597145334569632
RASVEGPLAI	10	Unmodified	_RASVEGPLAI_					0	0	0			REV__nc|ENSG00000157106|Q96Q15-4|SMG1	REV__nc|ENSG00000157106|Q96Q15-4|SMG1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	506.792924	1011.57129	-1.6348	-0.00082852	-0.69424	-0.00035183	-2.3291	-0.0011804	506.79282151278034	85.468	1.2383	83.977	83.505	84.743	-1.4906	-0.081706	0.00082052	NaN	69.628	65	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163190	+		47614	20512	39498	39520							0.06597145334569632
RASVEGPLAI	10	Unmodified	_RASVEGPLAI_					0	0	0			REV__nc|ENSG00000157106|Q96Q15-4|SMG1	REV__nc|ENSG00000157106|Q96Q15-4|SMG1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	506.792924	1011.57129	0.46064	0.00023345	-2.7243	-0.0013806	-2.2636	-0.0011472	506.7916091002206	86.767	1.6406	84.14	83.363	85.004	-2.6269	0.081706	-0.0012371	NaN	69.628	50	32	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	330230	+		47615	20512	39498	39520							0.06597145334569632
RATACILILI	10	Unmodified	_RATACILILI_					0	0	0			REV__ENST00000293230.9_1_17:74523460-74524138:-|nuORF	REV__ENST00000293230.9_1_17:74523460-74524138:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	543.8356323242188	2	543.83882	1085.66309	1.5392	0.00083707	1.7536	0.00095369	3.2928	0.0017908	543.8395786919444	28.227	0.75276	25.518	25.344	26.096	-2.7097					24	15	2	0	0	0	0.81992	1	601	601		16.473	0	1	48605	+		47616	24168	39499	39521	51046	51046					0.12368112427407141
RATALVVQ	8	Unmodified	_RATALVVQ_					0	0	0		nc|ENSG00000140474|Q6PHR2-3|ULK3;ENSG00000140474|ENST00000440863|ULK3;nc|ENSG00000140474|Q6PHR2-4|ULK3;ENST00000565881.5_1_15:75130108-75132610:-|nuORF;ENST00000566479.5_1_15:75130108-75132610:-|nuORF	nc|ENSG00000140474|Q6PHR2-3|ULK3	nc|ENSG00000140474|Q6PHR2-3|ULK3	MULTI-SECPEP	OvCa99_classI_Rep5	1	430.2179260253906	2	429.263802	856.513051	-1.0516	-0.00045143	0.75527	0.00032421	-0.29637	-0.00012722	429.2638552390338	43.869	0.56012	43.869	43.435	43.995	0					20	12	2	0	0	0	0.028476	1	2935	2935		10.866	0	1	69991			47617	4846	39500	39522	51047	51047					0.07905508479939272
RATDFFQI	8	Unmodified	_RATDFFQI_					0	0	0			REV__ENST00000435059.6_1_17:47781399-47785273:-|nuORF	REV__ENST00000435059.6_1_17:47781399-47785273:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.2865905761719	2	499.258717	996.50288	-0.44675	-0.00022305	3.6516	0.0018231	3.2049	0.0016	499.26014476121435	67.742	0.3514	67.742	67.528	67.88	0					15	8	2	0	0	0	0.028476	1	6354	6354		21.96	0	1	359890	+		47618	18529	39501	39523	51048	51048					0.004489007547249457
RATFMEVL	8	Unmodified	_RATFMEVL_					0	0	0		nc|ENSG00000196712|P21359-2|NF1;nc|ENSG00000196712|P21359-6|NF1;ENSG00000196712|ENST00000358273|NF1;ENST00000493220.5_2_17:29556858-29657521:+|nuORF;ENST00000495910.6_1_17:29490228-29576996:+|nuORF;nc|ENSG00000196712|P21359-4|NF1;NF1|p.M1949Ifs*2|1|0.67|ENSG00000196712|chr17:31334870-31334888|ATGACTCCATGGCTGTCAA/-|frameshift_variant;NF1|p.V2096Cfs*24|1|0.79|ENSG00000196712|chr17:31336771-31336772|-/T|frameshift_variant;NF1-RAB11FIP4|2|fusion;NF1-RAB11FIP4|3|fusion	nc|ENSG00000196712|P21359-2|NF1;NF1-RAB11FIP4|2|fusion	nc|ENSG00000196712|P21359-2|NF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	483.758056640625	2	483.757495	965.500437	3.3614	0.0016261	-2.501	-0.0012099	0.86034	0.0004162	483.7561891827334	133.64	1.3276	132.12	131.71	133.03	-1.5257					68	26	4	0	0	0	0.67745	1	12939	12939		47.916	0.25827	1	265510			47619	8645;15426	39502	39524	51049	51049					0.01630729025407618
RATGFPDI	8	Unmodified	_RATGFPDI_					0	0	0		ENSG00000154237|ENST00000388948|LRRK1;LRRK1|p.D987Efs*12|1|0.21|ENSG00000154237|chr15:101029229-101029230|-/G|frameshift_variant;ENST00000531270.5_1_15:101565016-101589971:+|nuORF;ENST00000525284.5_1_15:101565016-101602660:+|nuORF	ENSG00000154237|ENST00000388948|LRRK1	ENSG00000154237|ENST00000388948|LRRK1	MULTI-MSMS	OvCa99_classI_Rep5	1	438.7337951660156	2	438.732335	875.450116	1.2086	0.00053023	-1.9571	-0.00085865	-0.74856	-0.00032842	438.73128909796185	70.743	0.38921	70.743	70.641	71.031	0					17	9	2	0	0	0	0.64026	1	6810	6810		55.504	5.4797	1	3676300			47620	5721	39503	39525	51050	51050					0.007409426918911777
RATGMVERAR	10	Unmodified	_RATGMVERAR_					0	0	0			REV__ENST00000598782.1_1_19:4785174-4785513:-|nuORF	REV__ENST00000598782.1_1_19:4785174-4785513:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.2863159179688	2	573.811656	1145.60876	-0.45988	-0.00026388	-0.60706	-0.00034834	-1.0669	-0.00061222	573.8113196281254	29.81	0.65026	29.81	29.536	30.186	0					26	12	3	0	0	0	0.026906	1	1126	1126		41.427	3.6151	1	226570	+		47621	28015	39504	39526	51051	51051					0.041779133285444914
RATIDNCEPE	10	Unmodified	_RATIDNCEPE_					0	0	0			REV__ENSG00000110799|ENST00000261405|VWF	REV__ENSG00000110799|ENST00000261405|VWF	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.8367919921875	2	574.256045	1146.49754	1.8491	0.0010619	4.1898	0.002406	6.0389	0.0034679	574.2582755698028	85.565	0.53847	85.565	85.292	85.83	0					32	12	3	0	0	0	0.026681	1	9006	9006		44.377	11.565	1	1536400	+		47622	18003	39505	39527	51052	51052					-0.0698519089007732
RATKAGLVEL	10	Unmodified	_RATKAGLVEL_					0	0	0		ENSG00000168807|ENST00000336278|SNTB2;nc|ENSG00000168807|Q13425-2|SNTB2	ENSG00000168807|ENST00000336278|SNTB2	ENSG00000168807|ENST00000336278|SNTB2	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.3197021484375	2	529.321848	1056.62914	-0.42285	-0.00022382	0.15093	7.9892E-05	-0.27192	-0.00014393	529.3218210721118	38.222	1.3387	35.296	35.057	36.395	-2.9264					74	26	4	0	0	0	0.70152	1	1505	1505		30.318	1.1477	1	419980			47623	6944	39506	39528	51053	51053					0.10309407260001535
RATLKKHMLL	10	Unmodified	_RATLKKHMLL_					0	0	0		ENSG00000165821|ENST00000537235|SALL2;nc|ENSG00000165821|Q9Y467|SALL2	ENSG00000165821|ENST00000537235|SALL2	ENSG00000165821|ENST00000537235|SALL2	MULTI-MSMS	OvCa9_classI_Rep3	3	605.8709716796875	2	605.876268	1209.73798	-4.4327	-0.0026857	-2.6387	-0.0015988	-7.0715	-0.0042844	605.8745511795182	157.17	1.2501	156	155.65	156.91	-1.1707					83	31	4	0	0	0	0.81289	1	13557	13557		17.365	0.89182	1	204530			47624	6604	39507	39529	51054	51054					0.14150294958631093
RATLMKLVKIP	11	Unmodified	_RATLMKLVKIP_					0	0	0			REV__ENST00000418818.6_1_10:77043132-77161000:-|nuORF	REV__ENST00000418818.6_1_10:77043132-77161000:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	423.9388122558594	3	423.940693	1268.80025	0.22468	9.5253E-05	-3.093	-0.0013112	-2.8683	-0.001216	423.93936295129834	79.002	1.7188	77.263	76.855	78.574	-1.7398					100	33	4	0	0	0	0.53283	1	6624	6624		50.791	0.75773	1	391880	+		47625	21105	39508	39530	51055	51055					0.17660021306960516
RATLQVPCRSL	11	Unmodified	_RATLQVPCRSL_					0	0	0			REV__ENST00000332725.7_1_11:409920-417382:-|nuORF	REV__ENST00000332725.7_1_11:409920-417382:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	622.3531494140625	2	622.350614	1242.68668	1.4981	0.00093234	0.5091	0.00031684	2.0072	0.0012492	622.3509591408077	125.86	0.88245	125.86	125.39	126.28	0					47	19	3	0	0	0	0.59615	1	14579	14579		45.022	0.9054	1	594560	+		47626	24549	39509	39531	51056	51056					0.07503926193908228
RATLTLLLD	9	Unmodified	_RATLTLLLD_					0	0	0		nc|ENSG00000105137|Q6ZW31-2|SYDE1;ENSG00000105137|ENST00000342784|SYDE1	nc|ENSG00000105137|Q6ZW31-2|SYDE1	nc|ENSG00000105137|Q6ZW31-2|SYDE1	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.3100280761719	2	508.310949	1014.60735	1.1935	0.00060666	-1.1814	-0.00060052	0.012084	6.1426E-06	508.31022832895366	129.39	1.6322	127.93	127.6	129.23	-1.4565					60	32	3	0	0	0	0.46356	1	12420	12420		45.972	3.108	1	70621			47627	2424	39510	39532	51057	51057					0.1006260251143658
RATPRDKP	8	Unmodified	_RATPRDKP_					0	0	0		nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;ENST00000382162.7_1_22:32002284-32014401:+|nuORF;nc|ENSG00000198089|A8K8P3-5|SFI1;nc|ENSG00000198089|A8K8P3-4|SFI1;ENST00000474741.5_1_22:32009833-32014520:+|nuORF;ENST00000464333.5_1_22:32012607-32014401:+|nuORF	nc|ENSG00000198089|A8K8P3-10|SFI1;ENST00000464333.5_1_22:32012607-32014401:+|nuORF	nc|ENSG00000198089|A8K8P3-10|SFI1	MULTI-SECPEP	OvCa9_classI_Rep2	2	469.8047790527344	2	470.769783	939.525013	1.6735	0.00078782	2.559	0.0012047	4.2325	0.0019925	470.7710088285012	89.398	0.9882	88.074	87.325	88.313	-1.3232					31	19	3	0	0	0	0.028476	1	7824	7824		65.803	10.299	1	32687			47628	8783;12249	39511	39533	51058	51058					0.052831252231385406
RATPRDKP	8	Unmodified	_RATPRDKP_					0	0	0		nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;ENST00000382162.7_1_22:32002284-32014401:+|nuORF;nc|ENSG00000198089|A8K8P3-5|SFI1;nc|ENSG00000198089|A8K8P3-4|SFI1;ENST00000474741.5_1_22:32009833-32014520:+|nuORF;ENST00000464333.5_1_22:32012607-32014401:+|nuORF	nc|ENSG00000198089|A8K8P3-10|SFI1;ENST00000464333.5_1_22:32012607-32014401:+|nuORF	nc|ENSG00000198089|A8K8P3-10|SFI1	MULTI-SECPEP	OvCa9_classI_Rep3	3	469.8062744140625	2	470.769783	939.525013	-0.11928	-5.6151E-05	3.2708	0.0015398	3.1516	0.0014837	470.7715422506887	90.082	0.76866	88.002	87.747	88.516	-2.0805					29	14	3	0	0	0	0.028476	1	5555	5555		88.643	27.671	1	47411			47629	8783;12249	39511	39533	51059	51059					0.052831252231385406
RATPRSLLSQV	11	Unmodified	_RATPRSLLSQV_					0	0	0		nc|ENSG00000198881|Q8WXK4|ASB12;ENSG00000198881|ENST00000362002|ASB12	nc|ENSG00000198881|Q8WXK4|ASB12	nc|ENSG00000198881|Q8WXK4|ASB12	MULTI-SECPEP	OvCa99_classI_Rep5	1	613.8228759765625	2	614.362036	1226.70952	1.9303	0.0011859	-0.48755	-0.00029953	1.4427	0.00088636	614.3608961965218	83.859	0.25067	83.859	83.714	83.965	0					8	5	2	0	0	0	0.025861	1	8735	8735		30.318	6.795	1	173130			47630	8897	39512	39534	51060	51060					0.10523268583028766
RATSFLLAL	9	Unmodified	_RATSFLLAL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;RPN1|p.R263Tfs*3|1|0.4|ENSG00000163902|chr3:128632004-128632005|-/T|frameshift_variant;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OvCa9_classI_Rep2	2	496.3004455566406	2	496.300384	990.586216	-0.35919	-0.00017827	0.21743	0.00010791	-0.14176	-7.0356E-05	496.30031555631194	121.97	1.1373	121.75	121.47	122.61	-0.21803					58	22	4	0	0	0	0.37135	1	11795	11795		54.776	8.8244	1	202890			47631	6376	39513	39535	51061	51061					0.0905463720255284
RATSFLLAL	9	Unmodified	_RATSFLLAL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;RPN1|p.R263Tfs*3|1|0.4|ENSG00000163902|chr3:128632004-128632005|-/T|frameshift_variant;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OvCa9_classI_Rep3	3	496.3000183105469	2	496.300384	990.586216	1.2461	0.00061845	-1.3256	-0.00065787	-0.079436	-3.9424E-05	496.29955522437075	123.03	1.3483	121.99	121.68	123.03	-1.0377					64	25	3	0	0	0	0.40818	1	9485	9485		51.193	5.2407	1	228980			47632	6376	39513	39535	51062	51062					0.0905463720255284
RAVAFLARVM	10	Unmodified	_RAVAFLARVM_					0	0	0			REV__nc|ENSG00000132436|Q6PIW4-2|FIGNL1	REV__nc|ENSG00000132436|Q6PIW4-2|FIGNL1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3294067382812	2	567.334236	1132.65392	-3.474	-0.0019709	-4.3679	-0.002478	-7.8419	-0.004449	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.7759	1	12330	12330		21.96	1.013	1	458690	+		47633	19077	39514	39536	51063	51063					0.09289763861715983
RAVALIEQRA	10	Unmodified	_RAVALIEQRA_					0	0	0			REV__nc|ENSG00000283632|Q2M3D2|EXOC3L2	REV__nc|ENSG00000283632|Q2M3D2|EXOC3L2	MULTI-MSMS	OvCa99_classI_Rep5	1	563.8389892578125	2	563.838197	1125.66184	-0.04754	-2.6805E-05	-0.51732	-0.00029169	-0.56486	-0.00031849	563.8379269843244	54.649	0.89226	54.649	54.422	55.315	0					63	20	4	0	0	0	0.50999	1	4414	4414		52.937	8.8199	1	6013900	+		47634	23665	39515	39537	51064	51064					0.10403614382857995
RAVAVVEKEKH	11	Unmodified	_RAVAVVEKEKH_					0	0	0			REV__ENST00000309865.11_1_16:22482951-22501641:+|nuORF	REV__ENST00000309865.11_1_16:22482951-22501641:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.3668823242188	2	633.369861	1264.72517	-2.6571	-0.001683	1.5103	0.00095658	-1.1468	-0.00072637	633.3706685096566	150.42	2.9234	148.98	147.78	150.7	-1.4344					195	63	4	0	0	0	0.70142	1	14960	14960		29.17	8.3329	1	147740	+		47635	24328	39516	39538	51065	51065					0.1033955510006308
RAVDIYGNQ	9	Unmodified	_RAVDIYGNQ_					0	0	0		tr|A0A7D7A1S6|A0A7D7A1S6_9CLOTPLP-dependentaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16740PE=3SV=1	tr|A0A7D7A1S6|A0A7D7A1S6_9CLOTPLP-dependentaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16740PE=3SV=1	tr|A0A7D7A1S6|A0A7D7A1S6_9CLOTPLP-dependentaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16740PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.811279296875	2	518.26453	1034.51451	-0.060268	-3.1235E-05	-1.0142	-0.00052562	-1.0745	-0.00055686	518.2616836450488	88.384	0.50439	86.253	85.957	86.461	-2.1309					16	9	4	0	0	0	0.027455	1	5392	5392		42.396	3.1433	1	20350			47636	36047	39517	39539	51066	51066					-0.0013690222197055846
RAVDRAIPL	9	Unmodified	_RAVDRAIPL_					0	0	0		ENSG00000103381|ENST00000381774|CPPED1	ENSG00000103381|ENST00000381774|CPPED1	ENSG00000103381|ENST00000381774|CPPED1	MULTI-MSMS	OvCa9_classI_Rep2	2	505.808837890625	2	505.808908	1009.60326	-0.42662	-0.00021579	-0.33344	-0.00016866	-0.76006	-0.00038444	505.8086512781618	72.909	1.6754	70.509	70.115	71.79	-2.3999					58	31	2	0	0	0	0.38969	1	5929	5929		52.937	3.4952	1	489790			47637	2314	39518	39540	51067	51067					0.098845578083683
RAVFKKWSK	9	Unmodified	_RAVFKKWSK_					0	0	0			REV__MYO1E|p.R707K|1|0.23|ENSG00000157483|chr15:59174170-59174170|C/T|missense_variant	REV__MYO1E|p.R707K|1|0.23|ENSG00000157483|chr15:59174170-59174170|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	575.3452758789062	2	575.3482	1148.68185	-4.8722	-0.0028032	0.22204	0.00012775	-4.6502	-0.0026755	575.3482857575835	154.87	1.1278	154.64	154.34	155.47	-0.22696					59	30	3	0	0	0	0.70685	1	15794	15794		15.642	2.6826	1	84487	+		47638	28691	39519	39541	51068	51068					0.11345410113472099
RAVFRWDRC	9	Unmodified	_RAVFRWDRC_					0	0	0			REV__ENSG00000163013|ENST00000520530|FBXO41	REV__ENSG00000163013|ENST00000520530|FBXO41	MULTI-MSMS	OvCa99_classI_Rep5	1	604.8109741210938	2	604.808916	1207.60328	1.3189	0.0007977	0.13821	8.3592E-05	1.4571	0.0008813	604.8087968873099	155.3	1.6655	155.3	154.17	155.84	0					95	32	4	0	0	0	0.37135	1	18187	18187		54.776	7.119	1	1119600	+		47639	20800	39520	39542	51069	51069					0.007782345367104426
RAVGPLSR	8	Unmodified	_RAVGPLSR_					0	0	0			REV__ENST00000504941.1_1_5:106762801-107006392:-|nuORF	REV__ENST00000504941.1_1_5:106762801-107006392:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	428.2614440917969	2	428.261594	854.508634	-2.5112	-0.0010754	2.6852	0.00115	0.17402	7.4528E-05	428.26264584865925	144.43	1.5889	143.46	143.1	144.69	-0.97301					79	31	4	0	0	0	0.74992	1	12098	12098		26.693	3.6504	1	839380	+		47640	26867	39521	39543	51070	51070					0.0755604405703707
RAVHLLFRGVA	11	Unmodified	_RAVHLLFRGVA_					0	0	0		nc|ENSG00000203711|Q4VX62-2|LINC02901;nc|ENSG00000203711|Q4VX62|LINC02901	nc|ENSG00000203711|Q4VX62-2|LINC02901	nc|ENSG00000203711|Q4VX62-2|LINC02901	MULTI-MSMS	OvCa9_classI_Rep3	3	413.5882568359375	3	413.58753	1237.74076	1.5895	0.00065738	-1.5442	-0.00063865	0.045295	1.8734E-05	413.5867931980936	68.355	2.099	65.541	64.862	66.961	-2.8144					118	41	5	0	0	0	0.72466	1	2958	2958		12.957	0	1	366370			47641	15264	39522	39544	51071	51071					0.1313988640779371
RAVKAAREA	9	Unmodified	_RAVKAAREA_					0	0	0		ENSG00000137124|ENST00000377698|ALDH1B1	ENSG00000137124|ENST00000377698|ALDH1B1	ENSG00000137124|ENST00000377698|ALDH1B1	MULTI-MSMS	OvCa99_classI_Rep5	1	486.29443359375	2	486.290882	970.567212	1.8181	0.00088411	3.0214	0.0014693	4.8395	0.0023534	486.2922784489875	134.34	3.4861	134.34	133.72	137.21	0					179	74	5	0	0	0	0.59259	1	15961	15961		32.812	1.2826	1	13018000			47642	4560	39523	39545	51072	51072					0.08075100631504029
RAVLALLRAG	10	Unmodified	_RAVLALLRAG_					0	0	0		ENSG00000176435|ENST00000342213|CLEC14A	ENSG00000176435|ENST00000342213|CLEC14A	ENSG00000176435|ENST00000342213|CLEC14A	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3394775390625	2	520.340375	1038.6662	0.80842	0.00042065	-1.1686	-0.00060808	-0.36019	-0.00018742	520.3396330477779	43.438	1.3914	40.728	40.41	41.802	-2.7097					71	27	4	0	0	0	0.33376	1	2407	2407		76.774	13.468	1	349050			47643	7608	39524	39546	51073	51073					0.14841123596397665
RAVLFAAGTL	10	Unmodified	_RAVLFAAGTL_					0	0	0		ENST00000372512.2_1_6:43412869-43415021:+|nuORF;nc|ENSG00000124574|Q5T3U5-2|ABCC10;ENSG00000124574|ENST00000372530|ABCC10	ENST00000372512.2_1_6:43412869-43415021:+|nuORF	ENST00000372512.2_1_6:43412869-43415021:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	509.80352783203125	2	509.805834	1017.59712	-1.3099	-0.00066782	-2.9211	-0.0014892	-4.231	-0.002157	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.78463	1	11258	11258		20.947	0.95016	1	99460			47644	3661	39525	39547	51074	51074					0.08902039576844345
RAVLFVIF	8	Unmodified	_RAVLFVIF_					0	0	0			REV__tr|A0A553SH24|A0A553SH24_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_12030PE=4SV=1	REV__tr|A0A553SH24|A0A553SH24_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_12030PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.8164367675781	2	482.802563	963.590573	0.62197	0.00030029	4.267	0.0020601	4.889	0.0023604	482.8044908000382	160.37	1.7493	160.37	159.66	161.41	0					84	34	3	0	0	0	0.028476	1	18901	18901		39.021	0	1	88423	+		47645	29766	39526	39548	51075	51075					0.10732146416125943
RAVLGLFVQL	10	Unmodified	_RAVLGLFVQL_					0	0	0			REV__HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|108|2|anti-sense	REV__HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|108|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	558.3502197265625	2	558.350409	1114.68626	0.949	0.00052987	-1.8776	-0.0010484	-0.92863	-0.0005185	558.3493850514238	82.213	2.1494	80.564	80.179	82.328	-1.6485					112	42	4	0	0	0	0.53885	1	7006	7006		49.442	3.4896	1	1240000	+		47646	28220	39527	39549	51076	51076					0.13350874536376978
RAVLGPNGRWV	11	Unmodified	_RAVLGPNGRWV_					0	0	0		nc|ENSG00000198221|Q9Y6Z5-2|AFDN-DT;nc|ENSG00000198221|Q9Y6Z5|AFDN-DT	nc|ENSG00000198221|Q9Y6Z5-2|AFDN-DT	nc|ENSG00000198221|Q9Y6Z5-2|AFDN-DT	MULTI-MSMS	OvCa9_classI_Rep4_	4	408.9060363769531	3	408.903518	1223.68872	0.84004	0.0003435	2.2671	0.00092701	3.1071	0.0012705	408.90434483463133	20.906	1.1109	19.567	19.26	20.371	-1.3386					43	22	3	0	0	0	0.71191	1	117	117		22.562	1.7244	1	45078			47647	15256	39528	39550	51077	51077					0.08582722994037795
RAVLQFTP	8	Unmodified	_RAVLQFTP_					0	0	0		nc|ENSG00000156471|P48651-3|PTDSS1;nc|ENSG00000156471|P48651-2|PTDSS1;ENSG00000156471|ENST00000517309|PTDSS1	nc|ENSG00000156471|P48651-3|PTDSS1	nc|ENSG00000156471|P48651-3|PTDSS1	MULTI-MSMS	OvCa9_classI_Rep3	3	466.2723388671875	2	466.271627	930.528701	-1.0122	-0.00047197	0.75353	0.00035135	-0.2587	-0.00012062	466.2718496738201	86.977	1.6309	84.801	84.28	85.911	-2.1768					88	31	4	0	0	0	0.66057	1	5197	5197		51.335	5.3632	1	745130			47648	5841	39529	39551	51078	51078					0.060657949969822766
RAVLRLSPK	9	Unmodified	_RAVLRLSPK_					0	0	0		ENST00000421462.5_1_2:159314085-159314565:+|nuORF	ENST00000421462.5_1_2:159314085-159314565:+|nuORF	ENST00000421462.5_1_2:159314085-159314565:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.3404541015625	2	520.340375	1038.6662	-1.4242	-0.00074106	0.67069	0.00034899	-0.75349	-0.00039207	520.3406316371613	43.626	1.7808	40.618	40.326	42.106	-3.0074					96	34	5	0	0	0	0.27001	1	2121	2121		66.429	3.123	1	814690			47649	11683	39530	39552	51079	51079					0.14841123596397665
RAVLVLACV	9	Unmodified	_RAVLVLACV_					0	0	0			REV__ENSG00000186188|ENST00000371481|FFAR4	REV__ENSG00000186188|ENST00000371481|FFAR4	MULTI-MSMS	OvCa9_classI_Rep3	3	472.2872314453125	2	472.291505	942.568457	-4.0924	-0.0019328	-3.6504	-0.0017241	-7.7428	-0.0036569	472.28971542959135	151.08	2.3118	150.13	149.45	151.76	-0.95645					105	45	4	0	0	0	0.57242	1	12870	12870		35.201	3.2459	1	815680	+		47650	22564	39531	39553	51080	51080					0.09487598676048492
RAVLVLFNARP	11	Unmodified	_RAVLVLFNARP_					0	0	0			REV__ENST00000342085.8_1_16:2651281-2651560:+|nuORF	REV__ENST00000342085.8_1_16:2651281-2651560:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	628.3836059570312	2	628.385314	1254.75608	-4.0512	-0.0025457	-0.39444	-0.00024786	-4.4456	-0.0027935	628.3849132400738	150.53	4.7174	149.58	148	152.71	-0.95647					178	94	2	0	0	0	0.71498	1	12735	12735		24.519	0.99649	1	419100	+		47651	24644	39532	39554	51081	51081					0.13888753204969362
RAVMLFALI	9	Oxidation (M)	_RAVM(Oxidation (M))LFALI_		RAVM(1)LFALI		RAVM(63)LFALI	0	0	1		ENSG00000119457|ENST00000374228|SLC46A2	ENSG00000119457|ENST00000374228|SLC46A2	ENSG00000119457|ENST00000374228|SLC46A2	MULTI-MSMS	OvCa99_classI_Rep5	1	525.312255859375	2	525.312438	1048.61032	1.5575	0.00081818	1.4895	0.00078247	3.047	0.0016006	525.3132805311799	136.15	0.80289	136.15	135.83	136.63	0					37	16	3	0	0	0	0.30002	1	15859	15859		62.978	8.2138	1	350620			47652	3365	39533	39555	51082	51082		107			0.08796154364586073
RAVPRRPV	8	Unmodified	_RAVPRRPV_					0	0	0		ENST00000491308.5_1_1:155580060-155580830:+|nuORF	ENST00000491308.5_1_1:155580060-155580830:+|nuORF	ENST00000491308.5_1_1:155580060-155580830:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.23956298828125	2	475.80396	949.593367	1.8139	0.00086308	1.5982	0.00076044	3.4122	0.0016235	475.80468648361847	85.199	0.88216	82.553	82.361	83.243	-2.6463					30	17	3	0	0	0	0.028476	1	7161	7161		33.516	1.5607	1	65289			47653	12711	39534	39556	51083	51083					0.11655414593656133
RAVPRRPV	8	Unmodified	_RAVPRRPV_					0	0	0		ENST00000491308.5_1_1:155580060-155580830:+|nuORF	ENST00000491308.5_1_1:155580060-155580830:+|nuORF	ENST00000491308.5_1_1:155580060-155580830:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	475.80396	949.593367	-1.0561	-0.00050248	3.4907	0.0016609	2.4347	0.0011584	475.8055355615099	84.055	1.1254	82.509	82.275	83.4	-1.5462	-0.08295	0.00041593	NaN	60.294	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84991			47654	12711	39534	39556							0.11655414593656133
RAVPRRPV	8	Unmodified	_RAVPRRPV_					0	0	0		ENST00000491308.5_1_1:155580060-155580830:+|nuORF	ENST00000491308.5_1_1:155580060-155580830:+|nuORF	ENST00000491308.5_1_1:155580060-155580830:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	475.80396	949.593367	-0.1946	-9.2592E-05	2.8302	0.0013466	2.6356	0.0012541	475.80514070205214	84.937	1.0883	82.714	82.445	83.533	-2.223	0.12232	-0.00021258	NaN	60.294	46	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126720			47655	12711	39534	39556							0.11655414593656133
RAVQLKKTE	9	Unmodified	_RAVQLKKTE_					0	0	0		nc|ENSG00000170703|Q8N841-2|TTLL6;ENST00000376681.7_1_17:46840236-46881289:-|nuORF;TTLL6|p.A709Cfs*4|1|0.09|ENSG00000170703|chr17:48770013-48770014|-/A|frameshift_variant;nc|ENSG00000170703|Q8N841-3|TTLL6;ENSG00000170703|ENST00000393382|TTLL6	nc|ENSG00000170703|Q8N841-2|TTLL6	nc|ENSG00000170703|Q8N841-2|TTLL6	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2991333007812	2	536.827298	1071.64004	-0.77104	-0.00041391	1.6048	0.00086151	0.83379	0.0004476	536.8280318522075	42.107	0.51917	42.107	41.853	42.372	0					15	11	2	0	0	0	0.027462	1	2650	2650		31.53	0	1	74196			47656	7129	39535	39557	51084	51084					0.10708809634274985
RAVQPLRLPS	10	Unmodified	_RAVQPLRLPS_					0	0	0		ENST00000526004.1_1_14:25101006-25102204:-|nuORF;ENSG00000100453|ENST00000216341|GZMB	ENST00000526004.1_1_14:25101006-25102204:-|nuORF	ENST00000526004.1_1_14:25101006-25102204:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	568.8475341796875	2	568.848564	1135.68258	-0.94065	-0.00053509	-2.591	-0.0014739	-3.5317	-0.002009	568.8468987403617	122.03	1.7301	121.81	120.93	122.66	-0.21803					88	34	3	0	0	0	0.72319	1	11869	11869		27.882	1.1893	1	269790			47657	2071	39536	39558	51085	51085					0.12016204762517191
RAVRGHGAPL	10	Unmodified	_RAVRGHGAPL_					0	0	0		ENST00000557285.1_1_20:25057179-25058535:-|nuORF	ENST00000557285.1_1_20:25057179-25058535:-|nuORF	ENST00000557285.1_1_20:25057179-25058535:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.7545776367188	2	517.304324	1032.5941	2.4522	0.0012685	2.3866	0.0012346	4.8388	0.0025032	517.3054493466504	87.955	0.58392	87.955	87.671	88.255	0					17	13	2	0	0	0	0.026688	1	9314	9314		40.778	3.6191	1	318250			47658	13683	39537	39559	51086	51086					0.07910209242709243
RAVRHSSRSQT	11	Unmodified	_RAVRHSSRSQT_					0	0	0			REV__nc|ENSG00000095539|Q9NTN9-3|SEMA4G	REV__nc|ENSG00000095539|Q9NTN9-3|SEMA4G	MULTI-SECPEP	OvCa99_classI_Rep5	1	429.73809814453125	3	428.900836	1283.68068	0.11452	4.9116E-05	-3.16	-0.0013553	-3.0455	-0.0013062	429.23440743405575	46.969	0.5745	46.969	46.719	47.294	0					21	12	3	0	0	0	0.025908	1	3392	3392		16.53	0	1	71641	+		47659	17291	39538	39560	51087	51087					0.050185440066115916
RAVRRRCGC	9	Unmodified	_RAVRRRCGC_					0	0	0		ENST00000510911.5_1_5:176515491-176516637:+|nuORF;ENST00000513166.1_1_5:176514597-176516637:+|nuORF;ENST00000503708.5_1_5:176513947-176516637:+|nuORF;ENST00000393648.6_2_5:176513947-176516637:+|nuORF;ENST00000292408.8_1_5:176513967-176516637:+|nuORF;ENST00000514472.1_1_5:176513947-176516637:+|nuORF	ENST00000510911.5_1_5:176515491-176516637:+|nuORF	ENST00000510911.5_1_5:176515491-176516637:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	538.7879638671875	2	538.787461	1075.56037	-1.604	-0.00086421	4.0187	0.0021652	2.4147	0.001301	538.7894851684529	49.073	1.2378	46.313	45.829	47.067	-2.7603					49	24	3	0	0	0	0.58665	1	3090	3090		33.516	4.366	1	114310			47660	10099	39539	39561	51088	51088					0.02561141207638684
RAVTMRQIQ	9	Unmodified	_RAVTMRQIQ_					0	0	0			REV__ENST00000455611.6_1_4:146077119-146080700:-|nuORF	REV__ENST00000455611.6_1_4:146077119-146080700:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.2823486328125	2	551.811125	1101.6077	0.7868	0.00043417	2.0417	0.0011266	2.8285	0.0015608	551.8114616055747	110.33	1.2839	110.16	109.91	111.19	-0.17237					49	25	4	0	0	0	0.027462	1	10379	10379		25.45	3.7644	1	79145	+		47661	26018	39540	39562	51089	51089					0.06095698959643414
RAWEKLPTQ	9	Unmodified	_RAWEKLPTQ_					0	0	0		ENST00000509705.3_1_19:39390655-39398344:+|nuORF	ENST00000509705.3_1_19:39390655-39398344:+|nuORF	ENST00000509705.3_1_19:39390655-39398344:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.8095092773438	2	564.811648	1127.60874	-0.32119	-0.00018141	-1.7221	-0.00097268	-2.0433	-0.0011541	564.8105266478774	146.61	1.7739	145.17	144.75	146.53	-1.4357					75	34	3	0	0	0	0.62352	1	14395	14395		29.15	0	1	178590			47662	12963	39541	39563	51090	51090					0.05004236600166223
RAWIAMAL	8	Unmodified	_RAWIAMAL_					0	0	0		tr|A0A553SHU7|A0A553SHU7_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13670PE=4SV=1	tr|A0A553SHU7|A0A553SHU7_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13670PE=4SV=1	tr|A0A553SHU7|A0A553SHU7_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13670PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.6893005371094	2	466.262748	930.510943	0.83478	0.00038923	-3.0823	-0.0014372	-2.2475	-0.0010479	466.261166975405	74.396	1.0327	74.396	74.135	75.168	0					65	25	4	0	0	0	0.028476	1	7440	7440		29.842	0	1	5452500			47663	33315	39542	39564	51091	51091					0.042907564704592005
RAWLRRRL	8	Unmodified	_RAWLRRRL_					0	0	0		ENST00000408953.3_1_5:159826916-159827063:-|nuORF;ENST00000371276.8_2_1:55253469-55266576:-|nuORF	ENST00000408953.3_1_5:159826916-159827063:-|nuORF	ENST00000408953.3_1_5:159826916-159827063:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.8391723632812	2	563.857058	1125.69956	-0.050982	-2.8747E-05	-1.6572	-0.00093441	-1.7082	-0.00096315	563.8559848078212	55.213	0.76174	55.213	54.718	55.48	0					41	17	3	0	0	0	0.028476	1	4439	4439		33.516	0	1	896020			47664	10950	39543	39565	51092	51092					0.14174170158958077
RAWPIPEEL	9	Unmodified	_RAWPIPEEL_					0	0	0			REV__ENST00000603544.5_2_14:35592492-35592597:+|nuORF	REV__ENST00000603544.5_2_14:35592492-35592597:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	555.8025512695312	2	555.800749	1109.58694	1.8925	0.0010518	3.4699	0.0019285	5.3623	0.0029804	555.8025942849821	125.27	1.9835	125.27	124.89	126.87	0					116	45	5	0	0	0	0.29717	1	14517	14517		63.306	7.8021	1	6954900	+		47665	28051	39544	39566	51093	51093					0.03653431851603273
RAWPWAWRRRR	11	Unmodified	_RAWPWAWRRRR_					0	0	0		ENST00000381140.8_3_13:27998732-27999008:+|nuORF	ENST00000381140.8_3_13:27998732-27999008:+|nuORF	ENST00000381140.8_3_13:27998732-27999008:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.2695922851562	3	532.967627	1595.88105	-2.3296	-0.0012416	3.9628	0.002112	1.6332	0.00087044	532.9699183872843	48.925	0.9375	45.817	45.296	46.233	-3.1077					32	17	3	0	0	0	0.026505	1	2759	2759		9.2118	7.6888	1	66808			47666	11159	39545	39567	51094	51094					0.10694483184670389
RAWPWAWRRRR	11	Unmodified	_RAWPWAWRRRR_					0	0	0		ENST00000381140.8_3_13:27998732-27999008:+|nuORF	ENST00000381140.8_3_13:27998732-27999008:+|nuORF	ENST00000381140.8_3_13:27998732-27999008:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	532.967627	1595.88105	-1.7682	-0.00094241	3.6765	0.0019595	1.9083	0.001017	533.303811390836	48.489	0.69905	45.729	45.329	46.028	-2.7603	-0.043874	-0.00030074	NaN	8.7993	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33340			47667	11159	39545	39567							0.10694483184670389
RAWRGPGRE	9	Unmodified	_RAWRGPGRE_					0	0	0			REV__ENST00000358752.3_1_11:94277126-94277276:+|nuORF	REV__ENST00000358752.3_1_11:94277126-94277276:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.8057861328125	2	542.791581	1083.56861	0.73241	0.00039754	-4.3259	-0.002348	-3.5935	-0.0019505	542.788758050577	85.796	0.78811	83.15	82.755	83.543	-2.6463					29	15	2	0	0	0	0.027462	1	7276	7276		29.15	3.6994	1	35476	+		47668	24805	39546	39568	51095	51095					0.030167347202905148
RAWSTYYPA	9	Unmodified	_RAWSTYYPA_					0	0	0			REV__ENST00000457681.1_1_9:115246828-115249324:-|nuORF	REV__ENST00000457681.1_1_9:115246828-115249324:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.318115234375	2	557.769448	1113.52434	0.29351	0.00016371	-1.6785	-0.0009362	-1.385	-0.00077248	557.7690099482694	30.613	0.64407	30.613	30.383	31.027	0					32	12	4	0	0	0	0.027462	1	1177	1177		38.806	7.2763	1	108940	+		47669	26050	39547	39569	51096	51096					-0.027877142165834812
RAWTVYYYSLL	11	Unmodified	_RAWTVYYYSLL_					0	0	0		nc|ENSG00000172508|A5YM72-4|CARNS1;ENSG00000172508|ENST00000687366|CARNS1;nc|ENSG00000172508|A5YM72-3|CARNS1;ENST00000531958.5_1_11:67184814-67192505:+|nuORF	nc|ENSG00000172508|A5YM72-4|CARNS1	nc|ENSG00000172508|A5YM72-4|CARNS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.799560546875	3	478.918722	1433.73434	-0.074785	-3.5816E-05	4.0658	0.0019472	3.991	0.0019114	478.92096449261646	51.484	0.49863	51.484	51.248	51.747	0					14	11	2	0	0	0	0.025714	1	3972	3972		31.634	7.4025	1	232800			47670	7302	39548	39570	51097	51097					0.034819036657609104
RAWVDMVPD	9	Unmodified	_RAWVDMVPD_					0	0	0			REV__ENSG00000197705|ENST00000359358|KLHL14	REV__ENSG00000197705|ENST00000359358|KLHL14	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2557983398438	2	544.763309	1087.51206	-0.027397	-1.4925E-05	-0.59835	-0.00032596	-0.62575	-0.00034089	545.2640794233484	70.954	0.35017	70.954	70.8	71.15	0					14	8	3	0	0	0	0.027462	1	6858	6858		35.618	0	1	798110	+		47671	22944	39549	39571	51098	51098					-0.028190739512638174
RAYRELVL	8	Unmodified	_RAYRELVL_					0	0	0		nc|ENSG00000109339|P53779-2|MAPK10;nc|ENSG00000109339|P53779-3|MAPK10;ENSG00000109339|ENST00000641462|MAPK10;ENST00000476134.1_1_10:49609691-49618268:+|nuORF;nc|ENSG00000050748|P45984-5|MAPK9;nc|ENSG00000107643|P45983-5|MAPK8;ENST00000397072.7_1_5:179665329-179706839:-|nuORF;nc|ENSG00000050748|P45984-3|MAPK9;nc|ENSG00000050748|P45984-2|MAPK9;nc|ENSG00000107643|P45983-3|MAPK8;nc|ENSG00000107643|P45983-2|MAPK8;nc|ENSG00000050748|P45984-4|MAPK9;ENSG00000050748|ENST00000452135|MAPK9;nc|ENSG00000107643|P45983-4|MAPK8;ENSG00000107643|ENST00000374189|MAPK8	nc|ENSG00000109339|P53779-2|MAPK10	nc|ENSG00000109339|P53779-2|MAPK10	MULTI-MSMS	OvCa99_classI_Rep5	1	510.3026123046875	2	510.303458	1018.59236	-0.67021	-0.00034201	0.25771	0.00013151	-0.4125	-0.0002105	510.30361686312705	50.359	0.83572	50.359	50.114	50.949	0					33	18	3	0	0	0	0.73494	1	3824	3824		34.173	0	1	543260			47672	2710	39550	39572	51099	51099					0.08381155434085485
RAYVARPLP	9	Unmodified	_RAYVARPLP_					0	0	0		ENST00000427575.5_1_19:3500809-3500881:-|nuORF	ENST00000427575.5_1_19:3500809-3500881:-|nuORF	ENST00000427575.5_1_19:3500809-3500881:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	521.8113403320312	2	521.811451	1041.60835	-0.83564	-0.00043605	3.6163	0.001887	2.7806	0.001451	521.8134554363941	67.923	3.082	65.262	64.842	67.924	-2.661					124	61	3	0	0	0	0.61208	1	5319	5319		30.504	0	1	4500900			47673	11760	39551	39573	51100	51100					0.0892086167098114
RAYVARPLP	9	Unmodified	_RAYVARPLP_					0	0	0		ENST00000427575.5_1_19:3500809-3500881:-|nuORF	ENST00000427575.5_1_19:3500809-3500881:-|nuORF	ENST00000427575.5_1_19:3500809-3500881:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	521.8130493164062	2	521.811451	1041.60835	0.66684	0.00034797	2.3999	0.0012523	3.0667	0.0016003	521.8125550496435	68.201	4.7433	65.386	65.063	69.806	-2.8144					153	94	3	0	0	0	0.59983	3	3014	2965;2994;3014		31.955	5.0535	1	529900			47674	11760	39551	39573	51101;51102;51103	51103					0.0892086167098114
RAYVARPLP	9	Unmodified	_RAYVARPLP_					0	0	0		ENST00000427575.5_1_19:3500809-3500881:-|nuORF	ENST00000427575.5_1_19:3500809-3500881:-|nuORF	ENST00000427575.5_1_19:3500809-3500881:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.8142700195312	2	521.811451	1041.60835	-0.59233	-0.00030908	3.2047	0.0016722	2.6123	0.0013631	521.8131591315095	68.904	2.2928	65.414	65.113	67.406	-3.4902					139	46	6	0	0	0	0.67509	1	5174	5174		23.042	0	1	4748000			47675	11760	39551	39573	51104	51104					0.0892086167098114
RCAPNLIQP	9	Carbamidomethyl (C)	_RC(Carbamidomethyl (C))APNLIQP_	RC(1)APNLIQP		RC(49)APNLIQP		0	1	0			REV__ENSG00000153132|ENST00000325617|CLGN	REV__ENSG00000153132|ENST00000325617|CLGN	MSMS	OvCa99_classI_Rep5	1	534.7863159179688	2	534.784576	1067.5546	NaN	NaN	NaN	NaN	NaN	NaN	NaN	150.79	1	150.79	150.29	151.29	0								0	0	0	0.17066	1	17654	17654		49.442	12.282	1		+		47676	20323	39552	39574	51105	51105	223				0.023523211769543195
RCAVCGRRF	9	Unmodified	_RCAVCGRRF_					0	0	0		ENSG00000179965|ENST00000319296|ZNF771	ENSG00000179965|ENST00000319296|ZNF771	ENSG00000179965|ENST00000319296|ZNF771	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.8478393554688	2	534.271113	1066.52767	-1.0946	-0.00058479	2.9017	0.0015503	1.8071	0.00096548	534.2724345502752	47.082	0.65855	44.01	43.81	44.468	-3.0724					24	12	3	0	0	0	0.027462	1	2501	2501		31.955	0	1	48168			47677	7851	39553	39575	51106	51106					-0.0029306591520708025
RCDHDGCGKAF	11	Unmodified	_RCDHDGCGKAF_					0	0	0		MTF1|p.Q493Afs*35|1|0.08|ENSG00000188786|chr1:37822412-37822413|-/T|frameshift_variant;ENSG00000188786|ENST00000373036|MTF1	MTF1|p.Q493Afs*35|1|0.08|ENSG00000188786|chr1:37822412-37822413|-/T|frameshift_variant	MTF1|p.Q493Afs*35|1|0.08|ENSG00000188786|chr1:37822412-37822413|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	605.2461547851562	2	604.750407	1207.48626	-5.8265	-0.0035236	-1.231	-0.00074442	-7.0574	-0.004268	605.2514510820835	160.39	1.998	158.78	158.37	160.37	-1.6101					169	45	5	0	0	0	0.71582	1	15952	15952		24.232	0.029068	1	210060			47678	8503	39554	39576	51107	51107					-0.1091829146521377
RCELRRKLT	9	Unmodified	_RCELRRKLT_					0	0	0			REV__ENST00000396817.6_1_10:14989607-14996009:-|nuORF	REV__ENST00000396817.6_1_10:14989607-14996009:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.3096923828125	2	587.845499	1173.67644	-0.73622	-0.00043278	0.52147	0.00030654	-0.21475	-0.00012624	588.3460972532665	59.296	0.52116	59.296	58.973	59.494	0					31	13	4	0	0	0	0.027462	1	5116	5116		40.778	11.608	1	753600	+		47679	24789	39555	39577	51108	51108					0.09655363259321348
RCFCLAQLV	9	Unmodified	_RCFCLAQLV_					0	0	0			REV__USP46|p.Y54C|1|0.06|ENSG00000109189|chr4:52628120-52628120|T/C|missense_variant	REV__USP46|p.Y54C|1|0.06|ENSG00000109189|chr4:52628120-52628120|T/C|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	526.770751953125	2	526.772622	1051.53069	1.8839	0.00099239	-0.089508	-4.715E-05	1.7944	0.00094523	526.7724343930463	82.233	0.92824	82.233	81.937	82.865	0					48	21	4	0	0	0	0.21395	1	8507	8507		73.975	8.5094	1	2161200	+		47680	32751	39556	39578	51109	51109					0.006987644189166531
RCFIDELVD	9	Unmodified	_RCFIDELVD_					0	0	0			REV__ENSG00000155636|ENST00000286070|RBM45	REV__ENSG00000155636|ENST00000286070|RBM45	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.2958374023438	2	555.268424	1108.5223	-0.27128	-0.00015064	2.0457	0.0011359	1.7744	0.00098527	555.2691619115361	117.63	0.63058	116.29	116.1	116.73	-1.3444					15	11	2	0	0	0	0.027462	1	11009	11009		35.618	0	1	16849	+		47681	20433	39557	39579	51110	51110					-0.027625110166809463
RCFRNWRRWYR	11	Unmodified	_RCFRNWRRWYR_					0	0	0			REV__ERC1-CACNA1C|23|fusion	REV__ERC1-CACNA1C|23|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.3515014648438	3	566.960143	1697.8586	0.15812	8.9646E-05	-1.8708	-0.0010607	-1.7127	-0.00097105	567.2935653559257	72.964	0.67175	72.964	72.645	73.317	0					29	16	3	0	0	0	0.026551	1	7159	7159		1.4188	1.0473	1	288270	+		47682	28114	39558	39580	51111	51111					0.03758515724780409
RCIGLLLWL	9	Unmodified	_RCIGLLLWL_					0	0	0			REV__ENST00000496800.5_1_2:220110721-220112335:+|nuORF	REV__ENST00000496800.5_1_2:220110721-220112335:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	543.8296508789062	2	543.828255	1085.64196	2.2727	0.001236	2.5023	0.0013608	4.775	0.0025968	543.8294184197044	87.769	1.0038	87.769	87.338	88.342	0					47	23	3	0	0	0	0.25214	1	9294	9294		68.485	12.051	1	2334400	+		47683	18263	39559	39581	51112	51112					0.10256147118525405
RCLCLDPLF	9	Carbamidomethyl (C)	_RCLC(Carbamidomethyl (C))LDPLF_	RC(0.026)LC(0.974)LDPLF		RC(-16)LC(16)LDPLF		0	1	0			REV__ENSG00000177294|ENST00000321535|FBXO39	REV__ENSG00000177294|ENST00000321535|FBXO39	MULTI-MSMS	OvCa99_classI_Rep5	1	568.785400390625	2	568.783187	1135.55182	0.8493	0.00048307	3.8656	0.0021987	4.7149	0.0026818	568.7852914137449	152.43	1.2269	152.43	152.07	153.3	0					70	28	3	0	0	0	0.22961	1	17901	17901		71.296	12.514	2	947670	+		47684	21995	39560	39582	51113	51113	251				-0.010532702722457543
RCLEVEEHG	9	Unmodified	_RCLEVEEHG_					0	0	0			REV__ENST00000307169.3_1_14:36003904-36004144:+|nuORF	REV__ENST00000307169.3_1_14:36003904-36004144:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	536.2498779296875	2	536.248023	1070.48149	2.2652	0.0012147	2.0719	0.0011111	4.3372	0.0023258	536.2490458807978	120.46	1.5758	119.43	119.12	120.69	-1.0271					80	30	4	0	0	0	0.21395	2	9180	9180;9192		73.975	5.1879	1	464170	+		47685	24305	39561	39583	51114;51115	51114					-0.05092852336292708
RCLLHLAVIG	10	Unmodified	_RCLLHLAVIG_					0	0	0		nc|ENSG00000185664|P40967-4|PMEL;nc|ENSG00000185664|P40967-5|PMEL;ENSG00000185664|ENST00000548747|PMEL;nc|ENSG00000185664|P40967-2|PMEL;nc|ENSG00000185664|P40967-3|PMEL;ENST00000549413.1_1_12:56355068-56359795:-|nuORF;ENST00000550590.5_1_12:56352149-56359825:-|nuORF	nc|ENSG00000185664|P40967-4|PMEL	nc|ENSG00000185664|P40967-4|PMEL	MULTI-MSMS	OvCa9_classI_Rep3	3	547.825439453125	2	547.828786	1093.64302	-6.0458	-0.003312	1.7537	0.00096071	-4.2921	-0.0023513	547.8295905768617	154.78	1.79	153.77	152.92	154.71	-1.0076					93	40	3	0	0	0	0.82648	1	13352	13352		15.642	0	1	69775			47686	8273	39562	39584	51116	51116					0.0999436148742916
RCLSVLPAL	9	Unmodified	_RCLSVLPAL_					0	0	0		ENST00000530647.5_1_11:124746814-124747519:+|nuORF	ENST00000530647.5_1_11:124746814-124747519:+|nuORF	ENST00000530647.5_1_11:124746814-124747519:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	486.2895812988281	2	486.288963	970.563372	-0.051282	-2.4938E-05	0.13101	6.3706E-05	0.079724	3.8769E-05	486.28890972170547	95.271	2.7144	94.243	93.482	96.196	-1.0281					110	54	3	0	0	0	0.48324	1	8623	8623		44.117	5.3107	1	2640800			47687	13292	39563	39585	51117	51117					0.0769129481342361
RCLTTPMLLR	10	Unmodified	_RCLTTPMLLR_					0	0	0		ENSG00000110717|ENST00000313468|NDUFS8	ENSG00000110717|ENST00000313468|NDUFS8	ENSG00000110717|ENST00000313468|NDUFS8	MULTI-MSMS	OvCa9_classI_Rep4_	4	602.3399658203125	2	602.338661	1202.66277	0.72373	0.00043593	-1.4356	-0.00086473	-0.71189	-0.0004288	602.3377933815526	57.101	1.4736	53.756	53.425	54.899	-3.3449					54	28	2	0	0	0	0.38315	1	3700	3700		70.816	3.3225	1	727130			47688	2789	39564	39586	51118	51118					0.06954369435879926
RCPCPAKYLL	10	Unmodified	_RCPCPAKYLL_					0	0	0		nc|ENSG00000171804|Q6ZQQ6|WDR87;nc|ENSG00000171804|Q6ZQQ6-2|WDR87;ENSG00000171804|ENST00000447313|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-MSMS	OvCa99_classI_Rep5	1	582.306640625	2	582.306829	1162.59911	1.3591	0.00079141	3.8189	0.0022238	5.178	0.0030152	582.3091684146298	125.26	0.82878	125.26	124.98	125.81	0					35	20	3	0	0	0	0.31157	1	14467	14467		79.451	11.957	1	272500			47689	7235	39565	39587	51119	51119					0.024310089987693573
RCPDNKVL	8	Unmodified	_RCPDNKVL_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1;REV__nc|ENSG00000151914|Q03001|DST;REV__nc|ENSG00000127603|O94854|MACF1	REV__nc|ENSG00000151914|Q03001|DST	MULTI-MSMS	OvCa9_classI_Rep2	2	472.75146484375	2	472.752744	943.490935	-0.97149	-0.00045927	1.4188	0.00067072	0.44726	0.00021145	472.7533157758618	63.829	1.474	61.084	60.739	62.213	-2.7444					72	27	3	0	0	0	0.7043	1	4841	4841		42.474	0	1	801380	+		47690	20262;18823;28838	39566	39588	51120	51120					0.016929607398765256
RCPVSGSPRAP	11	Unmodified	_RCPVSGSPRAP_					0	0	0		ENST00000445792.7_1_X:305849-322301:-|nuORF	ENST00000445792.7_1_X:305849-322301:-|nuORF	ENST00000445792.7_1_X:305849-322301:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	563.7914428710938	2	563.792932	1125.57131	1.9225	0.0010839	-3.0557	-0.0017228	-1.1332	-0.00063887	563.7910966326856	87.996	1.2748	86.58	86.155	87.43	-1.4156					83	25	4	0	0	0	0.52474	1	7729	7729		51.528	3.8704	1	1009300			47691	11983	39567	39589	51121	51121					0.013548220629445495
RCRGKRVRQ	9	Unmodified	_RCRGKRVRQ_					0	0	0		ENSG00000176256|ENST00000681531|HMGB4	ENSG00000176256|ENST00000681531|HMGB4	ENSG00000176256|ENST00000681531|HMGB4	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.8074951171875	2	579.841082	1157.66761	-0.45696	-0.00026496	-0.84755	-0.00049144	-1.3045	-0.00075641	579.841447276297	66.599	0.45036	66.599	66.25	66.7	0					13	9	2	0	0	0	0.027455	1	6167	6167		51.335	12.529	1	218840			47692	7596	39569	39590	51122	51122					0.09508434413532996
RCRRLVQRPV	10	Unmodified	_RCRRLVQRPV_					0	0	0			REV__ENST00000395042.1_1_20:62705675-62708226:-|nuORF	REV__ENST00000395042.1_1_20:62705675-62708226:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8825073242188	2	641.88549	1281.75643	-4.6434	-0.0029805	0.11844	7.6024E-05	-4.5249	-0.0029045	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.82648	1	15761	15761		15.642	1.5047	1	543390	+		47693	25306	39570	39591	51123	51123					0.1268184965317687
RCSCYFSTL	9	Unmodified	_RCSCYFSTL_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.3302612304688	2	540.23607	1078.45759	-1.1149	-0.00060233	0.91443	0.00049401	-0.20051	-0.00010832	540.2365884132494	139.4	0.53943	138.34	137.98	138.52	-1.0595					14	10	2	0	0	0	0.027462	1	11457	11457		39.253	11.371	1	10906	+		47694	17073	39571	39592	51124	51124					-0.07850409094339739
RCSLGKKQPE	10	Unmodified	_RCSLGKKQPE_					0	0	0			REV__nc|ENSG00000288550|Q8NAC3|IL17RC	REV__nc|ENSG00000288550|Q8NAC3|IL17RC	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.876953125	2	573.308415	1144.60228	-2.834	-0.0016248	2.1711	0.0012447	-0.66287	-0.00038003	573.3100674994644	104.02	0.68298	104.02	103.81	104.49	0					31	15	3	0	0	0	0.026867	1	11657	11657		42.864	14.783	1	390080	+		47695	29206	39572	39593	51125	51125					0.03575975377157192
RCSRLVPVRGE	11	Unmodified	_RCSRLVPVRGE_					0	0	0			REV__nc|ENSG00000152439|Q6PK81-2|ZNF773	REV__nc|ENSG00000152439|Q6PK81-2|ZNF773	MULTI-MSMS	OvCa99_classI_Rep5	1	636.3594970703125	2	636.353688	1270.69282	2.383	0.0015164	0.22653	0.00014415	2.6096	0.0016606	636.3537443163232	76.593	0.96882	76.593	76.324	77.293	0					66	23	4	0	0	0	0.58642	1	7676	7676		36.447	0	1	5254900	+		47696	20284	39573	39594	51126	51126					0.06830444425440874
RCSVSAQSLL	10	Carbamidomethyl (C)	_RC(Carbamidomethyl (C))SVSAQSLL_	RC(1)SVSAQSLL		RC(48)SVSAQSLL		0	1	0		ENST00000530937.5_1_11:119185957-119187838:-|nuORF	ENST00000530937.5_1_11:119185957-119187838:-|nuORF	ENST00000530937.5_1_11:119185957-119187838:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	560.7899169921875	2	560.792598	1119.57064	0.076238	4.2753E-05	-3.3831	-0.0018972	-3.3069	-0.0018545	560.7906951341574	64.273	2.9179	61.548	60.968	63.886	-2.7245					181	56	6	0	0	0	0.55109	1	4924	4924		47.96	6.5329	1	2758800			47697	13297	39574	39595	51127	51127	155				0.015639826232018095
RCTFLKAIM	9	Unmodified	_RCTFLKAIM_					0	0	0		ENST00000487133.1_1_X:119742243-119746116:+|nuORF	ENST00000487133.1_1_X:119742243-119746116:+|nuORF	ENST00000487133.1_1_X:119742243-119746116:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.3466186523438	2	541.796097	1081.57764	-0.26091	-0.00014136	-0.48597	-0.00026329	-0.74687	-0.00040465	541.7958260985138	81.686	1.1523	79.363	79.057	80.209	-2.3226					62	22	4	0	0	0	0.027447	1	4646	4646		56.721	0	1	420140			47698	12637	39575	39596	51128	51128					0.04011623970063738
RCTLFVLL	8	Unmodified	_RCTLFVLL_					0	0	0			REV__tr|A0A7D7A669|A0A7D7A669_9CLOTMBLfoldmetallo-hydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09185PE=4SV=1	REV__tr|A0A7D7A669|A0A7D7A669_9CLOTMBLfoldmetallo-hydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09185PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.78436279296875	2	482.786056	963.557558	-0.56756	-0.00027401	-3.2223	-0.0015557	-3.7898	-0.0018297	482.7843636752227	121.17	1.9803	119.83	119.49	121.47	-1.3479					106	38	5	0	0	0	0.71369	1	11408	11408		40.573	0	1	662880	+		47699	32653	39576	39597	51129	51129					0.07432196301772365
RCVPLPAPFL	10	Unmodified	_RCVPLPAPFL_					0	0	0			REV__ENST00000361762.3_2_4:30722410-30722659:+|nuORF	REV__ENST00000361762.3_2_4:30722410-30722659:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	556.8171997070312	2	556.817887	1111.62122	-0.099481	-5.5393E-05	-0.23291	-0.00012969	-0.33239	-0.00018508	556.8175760509412	23.957	0.38885	23.957	23.748	24.137	0					16	7	3	0	0	0	0.75594	1	390	390		24.203	4.8428	1	73571	+		47700	24862	39577	39598	51130	51130					0.06987556738863532
RCVYCVNSDK	10	Unmodified	_RCVYCVNSDK_					0	0	0		ENST00000567272.1_1_6:126964989-126965184:+|nuORF	ENST00000567272.1_1_6:126964989-126965184:+|nuORF	ENST00000567272.1_1_6:126964989-126965184:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	593.9915771484375	2	593.770808	1185.52706	-0.53013	-0.00031477	3.1375	0.001863	2.6074	0.0015482	593.772115436993	70.213	1.6199	67.642	67.015	68.635	-2.5707					63	31	4	0	0	0	0.026681	1	5577	5577		44.377	20.854	1	63466			47701	13859	39578	39599	51131	51131					-0.05827950145589966
RCWSSLLLL	9	Unmodified	_RCWSSLLLL_					0	0	0			REV__nc|ENSG00000203722|Q6H3X3-3|RAET1G	REV__nc|ENSG00000203722|Q6H3X3-3|RAET1G	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.8118896484375	2	545.807519	1089.60049	2.3747	0.0012961	3.4935	0.0019068	5.8681	0.0032029	545.8093094575927	135.38	1.037	133.83	133.56	134.6	-1.5437					47	20	3	0	0	0	0.28934	1	13111	13111		64.207	3.9133	1	130950	+		47702	23109	39579	39600	51132	51132					0.05926966359220387
RCWSSLLLL	9	Unmodified	_RCWSSLLLL_					0	0	0			REV__nc|ENSG00000203722|Q6H3X3-3|RAET1G	REV__nc|ENSG00000203722|Q6H3X3-3|RAET1G	MULTI-MATCH	OvCa9_classI_Rep2	2		2	545.807519	1089.60049	-0.077788	-4.2457E-05	6.0095	0.00328	5.9317	0.0032376	545.8106455927277	134.3	1.0277	134.07	133.81	134.83	-0.22696	0.13904	0.00093302	NaN	64.207	46	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82414	+		47703	23109	39579	39600							0.05926966359220387
RDAAKMNIPT	10	Unmodified	_RDAAKMNIPT_					0	0	0		ENSG00000122140|ENST00000241600|MRPS2	ENSG00000122140|ENST00000241600|MRPS2	ENSG00000122140|ENST00000241600|MRPS2	MULTI-SECPEP	OvCa9_classI_Rep2	2	557.8453369140625	2	558.79514	1115.57573	2.1551	0.0012042	3.7205	0.002079	5.8756	0.0032833	558.7970237536299	87.912	0.93354	86.481	85.99	86.924	-1.4311					41	18	3	0	0	0	0.026802	1	7656	7656		26.693	0	1	34053			47704	3520	39580	39601	51133	51133					0.022562864857945897
RDAGHAPPPG	10	Unmodified	_RDAGHAPPPG_					0	0	0			REV__chr7:100867606-100868121|177|26.85|0.68|5.3|+|2|TRIP6,None|1	REV__chr7:100867606-100868121|177|26.85|0.68|5.3|+|2|TRIP6,None|1	MULTI-MSMS	OvCa9_classI_Rep2	2	487.7454833984375	2	487.743765	973.472977	2.4472	0.0011936	0.97674	0.0004764	3.4239	0.00167	487.74399401921767	27.829	0.93581	25.12	24.742	25.677	-2.7097					37	20	3	0	0	0	0.80532	1	502	502		18.324	1.8513	1	33068	+		47705	16085	39581	39602	51134	51134					-0.014820381906247349
RDAHGRKMSKS	11	Unmodified	_RDAHGRKMSKS_					0	0	0		ENSG00000204394|ENST00000375663|VARS1	ENSG00000204394|ENST00000375663|VARS1	ENSG00000204394|ENST00000375663|VARS1	MULTI-MSMS	OvCa9_classI_Rep2	2	636.8318481445312	2	636.83312	1271.65169	-1.7858	-0.0011373	-0.89633	-0.00057081	-2.6822	-0.0017081	636.8324728974585	33.272	1.1921	30.562	30.321	31.513	-2.7097					69	23	4	0	0	0	0.61375	1	1175	1175		27.047	0	1	314610			47706	8980	39582	39603	51135	51135					0.026726833859584076
RDAISLKQ	8	Unmodified	_RDAISLKQ_					0	0	0			REV__ENSG00000266094|ENST00000579436|RASSF5	REV__ENSG00000266094|ENST00000579436|RASSF5	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.7722473144531	2	465.771991	929.529429	0.52286	0.00024353	-0.56953	-0.00026527	-0.046666	-2.1736E-05	465.7715531655395	37.895	1.4402	35.003	34.541	35.982	-2.8925					63	28	4	0	0	0	0.65062	1	1449	1449		53.351	3.9099	1	305700	+		47707	23586	39583	39604	51136	51136					0.061845896460340555
RDAPGPGR	8	Unmodified	_RDAPGPGR_					0	0	0		ENST00000497152.6_1_15:91478820-91479213:+|nuORF;ENST00000394275.6_1_15:91478820-91479518:+|nuORF;ENST00000495068.5_1_15:91478820-91479382:+|nuORF	ENST00000497152.6_1_15:91478820-91479213:+|nuORF	ENST00000497152.6_1_15:91478820-91479213:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	413.241455078125	2	413.219926	824.425299	0.39636	0.00016378	-3.9328	-0.0016251	-3.5364	-0.0014613	413.2182308687202	65.014	0.62724	61.528	61.407	62.034	-3.4854					18	12	2	0	0	0	0.028476	1	4667	4667		26.796	7.4361	1	46161			47708	11263	39584	39605	51137	51137					0.006063076091891162
RDASLLLNF	9	Unmodified	_RDASLLLNF_					0	0	0		tr|A0A7D6VQ64|A0A7D6VQ64_9CLOTserine-typeD-Ala-D-AlacarboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14395PE=3SV=1	tr|A0A7D6VQ64|A0A7D6VQ64_9CLOTserine-typeD-Ala-D-AlacarboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14395PE=3SV=1	tr|A0A7D6VQ64|A0A7D6VQ64_9CLOTserine-typeD-Ala-D-AlacarboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14395PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	524.7911376953125	2	524.792924	1047.57129	0.0077565	4.0706E-06	2.3416	0.0012288	2.3493	0.0012329	524.7938551320175	114.73	0.5575	114.73	114.51	115.07	0					19	11	3	0	0	0	0.46356	1	13104	13104		45.972	0	1	193400			47709	34823	39585	39606	51138	51138					0.049411453345555856
RDCLLALPL	9	Unmodified	_RDCLLALPL_					0	0	0			REV__nc|ENSG00000197558|A2VEC9|SSPOP	REV__nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.8415222167969	2	507.294245	1012.57394	-0.36756	-0.00018646	-2.9164	-0.0014795	-3.284	-0.001666	507.29264568258895	109.98	1.6061	108.83	108.45	110.06	-1.1444					70	29	4	0	0	0	0.027279	1	8004	8004		82.305	0	1	340940	+		47710	29083	39586	39607	51139	51139					0.06815277467853775
RDEDDNLGPK	10	Unmodified	_RDEDDNLGPK_					0	0	0		ENSG00000166225|ENST00000549921|FRS2	ENSG00000166225|ENST00000549921|FRS2	ENSG00000166225|ENST00000549921|FRS2	MULTI-MSMS	OvCa99_classI_Rep5	1	579.7745971679688	2	579.772916	1157.53128	-0.61133	-0.00035443	1.2502	0.00072485	0.6389	0.00037042	579.7734286043503	56.274	0.60847	56.274	55.973	56.581	0					33	14	3	0	0	0	0.47131	1	4651	4651		58.246	8.7102	1	1494100			47711	6654	39587	39608	51140	51140					-0.041184461266539074
RDEKDGINR	9	Unmodified	_RDEKDGINR_					0	0	0		ENSG00000152822|ENST00000282753|GRM1;ENST00000507005.1_1_6:146350692-146480734:+|nuORF;nc|ENSG00000152822|Q13255-2|GRM1;nc|ENSG00000152822|Q13255-3|GRM1	ENSG00000152822|ENST00000282753|GRM1	ENSG00000152822|ENST00000282753|GRM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.32275390625	2	551.783619	1101.55268	-0.6418	-0.00035414	-3.6753	-0.002028	-4.3171	-0.0023821	551.7813248755456	38.475	0.63667	38.475	38.069	38.705	0					20	13	2	0	0	0	0.027403	1	2209	2209		79.713	2.395	1	82958			47712	5648	39588	39609	51141	51141					0.005969836927079086
RDESEEYVL	9	Unmodified	_RDESEEYVL_					0	0	0			REV__ENST00000591270.1_1_17:49270805-49337516:-|nuORF	REV__ENST00000591270.1_1_17:49270805-49337516:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	570.3150024414062	2	570.264393	1138.51423	0.60746	0.00034641	0.22568	0.0001287	0.83314	0.00047511	570.7646923362026	120.02	0.5899	119	118.72	119.31	-1.0271					16	11	2	0	0	0	0.027462	1	9102	9102		37.159	0	1	12894	+		47713	16486	39589	39610	51142	51142					-0.04948366732469367
RDFVDGPIHH	10	Unmodified	_RDFVDGPIHH_					0	0	0		ENSG00000138696|ENST00000515059|BMPR1B;nc|ENSG00000138696|O00238-2|BMPR1B	ENSG00000138696|ENST00000515059|BMPR1B	ENSG00000138696|ENST00000515059|BMPR1B	MULTI-SECPEP	OvCa9_classI_Rep2	2	596.8169555664062	2	596.796529	1191.5785	-1.5333	-0.00091508	4.3487	0.0025953	2.8154	0.0016802	596.7990041782433	55.079	0.65011	52.265	51.922	52.572	-2.8139					22	12	2	0	0	0	0.026891	1	3846	3846		39.253	2.8061	1	22413			47714	4714	39590	39611	51143	51143					-0.009621220650160467
RDGEFLLTAV	10	Unmodified	_RDGEFLLTAV_					0	0	0			REV__ENSG00000018510|ENST00000264167|AGPS	REV__ENSG00000018510|ENST00000264167|AGPS	MULTI-MSMS	OvCa9_classI_Rep2	2	560.8021850585938	2	560.803488	1119.59242	0.98251	0.00055099	-1.1969	-0.0006712	-0.21435	-0.00012021	560.8027147964513	112.28	0.74033	112.15	111.78	112.52	-0.12174					37	14	3	0	0	0	0.6349	1	10609	10609		37.812	0	1	466450	+		47715	16531	39591	39612	51144	51144					0.03741110643431966
RDGEFLLTAV	10	Unmodified	_RDGEFLLTAV_					0	0	0			REV__ENSG00000018510|ENST00000264167|AGPS	REV__ENSG00000018510|ENST00000264167|AGPS	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.8025512695312	2	560.803488	1119.59242	1.6271	0.00091251	-1.4809	-0.00083048	0.14627	8.2027E-05	560.802565252688	113.47	2.0685	112.03	111.61	113.67	-1.4461					95	40	3	0	0	0	0.58067	1	10514	10514		44.377	5.1244	1	624400	+		47716	16531	39591	39612	51145	51145					0.03741110643431966
RDGGLACMVDW	11	Carbamidomethyl (C),Oxidation (M)	_RDGGLAC(Carbamidomethyl (C))M(Oxidation (M))VDW_	RDGGLAC(1)MVDW	RDGGLACM(1)VDW	RDGGLAC(50)MVDW	RDGGLACM(50)VDW	0	1	1			REV__ENST00000430373.1_1_1:112290167-112290386:+|nuORF	REV__ENST00000430373.1_1_1:112290167-112290386:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	648.2828369140625	2	648.278997	1294.54344	2.7369	0.0017743	3.2329	0.0020958	5.9698	0.0038701	648.2810200850918	86.322	0.64723	86.322	86.073	86.72	0					40	15	3	0	0	0	0.5466	1	9097	9097		49.536	7.0616	1	1961400	+		47717	25712	39592	39613	51146	51146	318	580			-0.09204868979486491
RDGKKKLRIL	10	Unmodified	_RDGKKKLRIL_					0	0	0			REV__ENSG00000109758|ENST00000382774|HGFAC	REV__ENSG00000109758|ENST00000382774|HGFAC	MULTI-MSMS	OvCa9_classI_Rep2	2	409.60772705078125	3	409.606701	1225.79827	0.6889	0.00028218	2.4344	0.00099713	3.1233	0.0012793	409.60766459120623	104.29	12.102	103.72	103.28	115.38	-0.57639					699	244	5	0	0	0	0.75313	1	9934	9934		24.519	1.9395	1	1628000	+		47718	17947	39593	39614	51147	51147					0.1944072861335826
RDGLRGPLHL	10	Unmodified	_RDGLRGPLHL_					0	0	0		ENST00000368061.2_1_1:160388904-160390242:+|nuORF	ENST00000368061.2_1_1:160388904-160390242:+|nuORF	ENST00000368061.2_1_1:160388904-160390242:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3303833007812	2	567.330539	1132.64652	-0.48412	-0.00027465	-0.73588	-0.00041748	-1.22	-0.00069214	567.3299446868054	145.54	4.8872	144.11	142.68	147.57	-1.4357					247	95	4	0	0	0	0.7759	1	14476	14476		21.96	1.013	1	208760			47719	10860	39594	39615	51148	51148					0.0855074758567298
RDGTKWTQ	8	Unmodified	_RDGTKWTQ_					0	0	0			REV__IQCC|p.A72T|1|0.04|ENSG00000160051|chr1:32206536-32206536|G/A|missense_variant	REV__IQCC|p.A72T|1|0.04|ENSG00000160051|chr1:32206536-32206536|G/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.77276611328125	2	496.251423	990.488293	-0.77754	-0.00038586	-3.6182	-0.0017956	-4.3958	-0.0021814	496.2494170388822	80.679	1.2239	77.968	77.466	78.69	-2.7106					32	24	2	0	0	0	0.028476	1	6639	6639		35.618	0	1	129620	+		47720	28312	39595	39616	51149	51149					-0.007331713934377149
RDGVLQPKHK	10	Unmodified	_RDGVLQPKHK_					0	0	0			REV__ENST00000442677.3_1_10:73474007-73474583:+|nuORF	REV__ENST00000442677.3_1_10:73474007-73474583:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3430786132812	2	589.343646	1176.67274	-3.0463	-0.0017953	1.897	0.001118	-1.1493	-0.00067734	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.81208	1	14806	14806		17.468	0.10304	1	272220	+		47721	25860	39596	39617	51150	51150					0.09147016757128767
RDHHEAVQLA	10	Unmodified	_RDHHEAVQLA_					0	0	0			REV__ENST00000565298.5_1_16:1574507-1576156:-|nuORF	REV__ENST00000565298.5_1_16:1574507-1576156:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	588.3012084960938	2	588.299436	1174.58432	-0.42429	-0.00024961	1.3282	0.0007814	0.90394	0.00053179	588.3001914952855	63.758	1.3538	60.283	59.868	61.222	-3.475					76	27	3	0	0	0	0.39172	1	4501	4501		69.628	16.691	1	1274500	+		47722	16269	39597	39618	51151	51151					0.004009764466673005
RDHPAVIKR	9	Unmodified	_RDHPAVIKR_					0	0	0		ENSG00000173653|ENST00000309657|RCE1;ENST00000534822.1_1_11:66611010-66611365:+|nuORF;RCE1|p.S82Tfs*59|1|0.91|ENSG00000173653|chr11:66843810-66843811|CA/-|frameshift_variant	ENSG00000173653|ENST00000309657|RCE1	ENSG00000173653|ENST00000309657|RCE1	MULTI-SECPEP	OvCa9_classI_Rep2	2	546.8097534179688	2	546.325257	1090.63596	-0.31693	-0.00017315	1.1023	0.00060223	0.78539	0.00042908	546.3258958645855	77.798	0.62925	76.008	75.727	76.356	-1.7894					20	11	2	0	0	0	0.027448	1	6505	6505		63.306	4.5243	1	25160			47723	7402	39598	39619	51152	51152					0.09426764931231446
RDIHPRSVK	9	Unmodified	_RDIHPRSVK_					0	0	0		tr|A0A553SQI7|A0A553SQI7_NIACIN-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07760PE=4SV=1	tr|A0A553SQI7|A0A553SQI7_NIACIN-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07760PE=4SV=1	tr|A0A553SQI7|A0A553SQI7_NIACIN-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07760PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	554.322509765625	2	554.322714	1106.63087	-0.94441	-0.00052351	0.71626	0.00039704	-0.22815	-0.00012647	554.3229407239729	34.332	0.70457	34.332	34.113	34.818	0					34	14	4	0	0	0	0.40818	1	1649	1649		51.193	6.8155	1	837830			47724	34165	39599	39620	51153	51153					0.08182461068599878
RDILRGANELA	11	Unmodified	_RDILRGANELA_					0	0	0			REV__ENSG00000113569|ENST00000231498|NUP155	REV__ENSG00000113569|ENST00000231498|NUP155	MULTI-SECPEP	OvCa99_classI_Rep5	1	613.8229370117188	2	614.343843	1226.67313	2.5128	0.0015437	2.138	0.0013135	4.6508	0.0028572	614.3447783476641	84.604	0.49452	84.604	84.388	84.882	0					16	11	2	0	0	0	0.025378	1	8825	8825		29.551	0	1	577220	+		47725	18157	39600	39621	51154	51154					0.06886391686339266
RDISGRSLRVD	11	Unmodified	_RDISGRSLRVD_					0	0	0			REV__nc|ENSG00000169398|Q05397-7|PTK2	REV__nc|ENSG00000169398|Q05397-7|PTK2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	425.7754821777344	3	425.237225	1272.68985	-0.33356	-0.00014184	3.8213	0.0016249	3.4877	0.0014831	425.238873505164	69.193	1.2701	65.708	65.463	66.733	-3.4857					88	25	6	0	0	0	0.025528	1	5239	5239		10.562	0	1	237780	+		47726	21460	39601	39622	51155	51155					0.06440892572254597
RDKGKIPVI	9	Unmodified	_RDKGKIPVI_					0	0	0			REV__nc|ENSG00000168675|O15165-8|LDLRAD4	REV__nc|ENSG00000168675|O15165-8|LDLRAD4	MULTI-MSMS	OvCa9_classI_Rep2	2	513.3270874023438	2	513.326934	1024.63931	-0.72981	-0.00037463	-1.1237	-0.00057681	-1.8535	-0.00095145	513.3270041871727	67.528	2.3815	64.867	64.644	67.025	-2.661					66	47	2	0	0	0	0.33652	2	5309	5295;5309		58.782	5.4305	1	1844100	+		47727	21392	39602	39623	51156;51157	51157					0.12798014985219197
RDKILGATI	9	Unmodified	_RDKILGATI_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;CON__P19001	CON__P08727	CON__P08727	MULTI-MSMS	OvCa9_classI_Rep3	3	493.8039245605469	2	493.803291	985.59203	-0.072185	-3.5645E-05	0.034712	1.7141E-05	-0.037473	-1.8504E-05	493.80316854468964	72.345	1.8838	69.743	69.472	71.356	-2.6023					88	37	4	0	0	0	0.2077	1	3446	3446		75.043	5.4157	1	629620		+	47728	625	39603	39624	51158	51158					0.09865735714231505
RDKLANVND	9	Unmodified	_RDKLANVND_					0	0	0			REV__ENSG00000102580|ENST00000602402|DNAJC3	REV__ENSG00000102580|ENST00000602402|DNAJC3	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.31396484375	2	522.775262	1043.53597	-1.0689	-0.00055878	2.9936	0.001565	1.9247	0.0010062	522.7761214608053	37.766	0.81612	37.766	37.485	38.301	0					27	17	3	0	0	0	0.027447	1	2092	2092		47.657	11.211	1	91219	+		47729	17564	39604	39625	51159	51159					0.01594482806740416
RDKYILDKI	9	Unmodified	_RDKYILDKI_					0	0	0		tr|A0A7D6VQW0|A0A7D6VQW0_9CLOTGlutamyl-tRNAreductaseOS=ClostridiumintestinaleOX=36845GN=hemAPE=3SV=1	tr|A0A7D6VQW0|A0A7D6VQW0_9CLOTGlutamyl-tRNAreductaseOS=ClostridiumintestinaleOX=36845GN=hemAPE=3SV=1	tr|A0A7D6VQW0|A0A7D6VQW0_9CLOTGlutamyl-tRNAreductaseOS=ClostridiumintestinaleOX=36845GN=hemAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	582.3463134765625	2	582.342781	1162.67101	2.2284	0.0012977	3.0533	0.001778	5.2817	0.0030758	582.3445401660628	100.7	1.8899	100.7	100.4	102.29	0					155	44	5	0	0	0	0.049969	2	11182	11182;11213		118.74	11.736	1	32953000			47730	34873	39605	39626	51160;51161	51160					0.0961796294850501
RDLAIVCLHLI	11	Unmodified	_RDLAIVCLHLI_					0	0	0			REV__ENSG00000135312|ENST00000369947|HTR1B	REV__ENSG00000135312|ENST00000369947|HTR1B	MULTI-MSMS	OvCa9_classI_Rep3	3	633.36767578125	2	633.373558	1264.73256	-4.8823	-0.0030923	-1.8485	-0.0011708	-6.7309	-0.0042631	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.72479	1	12966	12966		18.262	0	1	765700	+		47731	19271	39606	39627	51162	51162					0.11078571376151558
RDLELLERL	9	Unmodified	_RDLELLERL_					0	0	0		nc|ENSG00000100485|Q07890-2|SOS2;ENSG00000100485|ENST00000216373|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	nc|ENSG00000100485|Q07890-2|SOS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.8528442382812	2	578.837862	1155.66117	-1.2874	-0.00074521	0.54966	0.00031816	-0.73777	-0.00042705	578.838158212375	69.83	0.49798	69.83	69.591	70.089	0					25	11	3	0	0	0	0.027137	1	6635	6635		110.12	19.75	1	570930			47732	2076	39607	39628	51163	51163					0.08956774943135315
RDLHEDPSEN	10	Unmodified	_RDLHEDPSEN_					0	0	0		ENST00000264409.4_1_4:84457813-84465708:+|nuORF	ENST00000264409.4_1_4:84457813-84465708:+|nuORF	ENST00000264409.4_1_4:84457813-84465708:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	606.2667846679688	2	606.267998	1210.52144	1.074	0.0006511	-3.8415	-0.002329	-2.7676	-0.0016779	606.2655214941661	157.88	0.77075	157.88	157.55	158.32	0					37	15	3	0	0	0	0.64697	1	18511	18511		36.447	2.5251	1	926790			47733	9930	39608	39629	51164	51164					-0.07539634132035644
RDLQLVLILA	10	Unmodified	_RDLQLVLILA_					0	0	0		ENST00000534624.5_1_11:122931950-122932924:-|nuORF	ENST00000534624.5_1_11:122931950-122932924:-|nuORF	ENST00000534624.5_1_11:122931950-122932924:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	577.3677978515625	2	577.368798	1152.72304	-1.6942	-0.00097816	1.3228	0.00076377	-0.37133	-0.00021439	577.3694914290571	127.2	2.4686	125.77	125.44	127.91	-1.4357					130	48	5	0	0	0	0.48198	1	12167	12167		56.721	15.943	1	1097800			47734	13360	39609	39630	51165	51165					0.1527912636227029
RDLRGIINRGL	11	Unmodified	_RDLRGIINRGL_					0	0	0		ENSG00000165125|ENST00000359396|TRPV6;nc|ENSG00000165125|Q9H1D0-2|TRPV6	ENSG00000165125|ENST00000359396|TRPV6	ENSG00000165125|ENST00000359396|TRPV6	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8817138671875	2	641.888752	1281.76295	-5.3554	-0.0034376	-4.2627	-0.0027362	-9.6181	-0.0061737	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.69808	1	13257	13257		30.318	3.6248	1	804890			47735	6525	39610	39631	51166	51166					0.13334066085553786
RDLVAIKKV	9	Unmodified	_RDLVAIKKV_					0	0	0			REV__tr|A0A7D6VQR2|A0A7D6VQR2_9CLOTPyruvate:ferredoxinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=nifJPE=3SV=1	REV__tr|A0A7D6VQR2|A0A7D6VQR2_9CLOTPyruvate:ferredoxinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=nifJPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.8238525390625	2	521.342584	1040.67061	2.0025	0.001044	0.22671	0.00011819	2.2292	0.0011622	521.3426034092214	75.879	0.51419	75.879	75.601	76.115	0					20	12	2	0	0	0	0.027462	1	7537	7537		26.693	0	1	708140	+		47736	31350	39611	39632	51167	51167					0.15190588019299867
RDLWSLLHH	9	Unmodified	_RDLWSLLHH_					0	0	0		MDN1|p.E3571Vfs*18|1|0.11|ENSG00000112159|chr6:89690710-89690711|-/AGGGAAGGAGAGTCACTTA|frameshift_variant;MDN1|p.N5282Ifs*9|1|0.04|ENSG00000112159|chr6:89652262-89652263|-/GATTTTTCTGCCAACTA|frameshift_variant;MDN1|p.I5359Kfs*8|1|0.1|ENSG00000112159|chr6:89650154-89650155|-/CATAGCT|frameshift_variant;ENSG00000112159|ENST00000369393|MDN1	MDN1|p.E3571Vfs*18|1|0.11|ENSG00000112159|chr6:89690710-89690711|-/AGGGAAGGAGAGTCACTTA|frameshift_variant	MDN1|p.E3571Vfs*18|1|0.11|ENSG00000112159|chr6:89690710-89690711|-/AGGGAAGGAGAGTCACTTA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	588.8195190429688	2	588.817264	1175.61998	-1.244	-0.00073247	3.9238	0.0023104	2.6799	0.0015779	588.8196084801616	72.446	2.1291	69.844	69.376	71.505	-2.6023					122	42	4	0	0	0	0.38529	1	3471	3471		53.351	0.41475	1	1640900			47737	2882	39612	39633	51168	51168					0.039190586943277594
RDMGHLQVD	9	Unmodified	_RDMGHLQVD_					0	0	0		ENSG00000150938|ENST00000280527|CRIM1	ENSG00000150938|ENST00000280527|CRIM1	ENSG00000150938|ENST00000280527|CRIM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.7863159179688	2	535.756015	1069.49748	1.3044	0.00069884	-1.2016	-0.00064376	0.10281	5.5082E-05	535.7552179660204	149.79	1.3499	149.79	149.44	150.79	0					45	26	3	0	0	0	0.027462	1	17654	17654		30.318	1.1682	1	297090			47738	5523	39613	39634	51169	51169					-0.0344914609938769
RDMRRERQRR	10	Unmodified	_RDMRRERQRR_					0	0	0		ENST00000579009.1_1_17:16842557-16842860:-|nuORF	ENST00000579009.1_1_17:16842557-16842860:-|nuORF	ENST00000579009.1_1_17:16842557-16842860:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.7470703125	3	486.935886	1457.78583	-0.34546	-0.00016822	-1.6943	-0.00082503	-2.0398	-0.00099325	486.9350378514625	44.78	0.62901	44.78	44.573	45.202	0					45	13	4	0	0	0	0.027207	1	3037	3037		30.569	15.231	1	2512000			47739	13976	39614	39635	51170	51170					0.07524761931358626
RDNPGGRGPLI	11	Unmodified	_RDNPGGRGPLI_					0	0	0			REV__ENST00000492535.1_1_22:32889009-32894514:+|nuORF	REV__ENST00000492535.1_1_22:32889009-32894514:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	576.3204956054688	2	576.317628	1150.6207	0.13914	8.0186E-05	1.6039	0.00092436	1.743	0.0010045	576.3183784303181	162.32	0.55284	162.32	161.97	162.53	0					25	10	3	0	0	0	0.61983	1	19053	19053		42.864	2.0861	1	297850	+		47740	17382	39615	39636	51171	51171					0.051418533433889024
RDPCLPPRL	9	Unmodified	_RDPCLPPRL_					0	0	0		ENST00000433206.6_1_17:37075690-37076056:+|nuORF	ENST00000433206.6_1_17:37075690-37076056:+|nuORF	ENST00000433206.6_1_17:37075690-37076056:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	533.794921875	2	533.794943	1065.57533	-0.64267	-0.00034305	0.91512	0.00048849	0.27246	0.00014544	533.7951078206019	36.245	0.81929	36.245	35.799	36.618	0					51	17	5	0	0	0	0.28934	1	1888	1888		64.207	0	1	1164900			47741	11825	39616	39637	51172	51172					0.045169115566068285
RDPLGASYL	9	Unmodified	_RDPLGASYL_					0	0	0		ENSG00000128731|ENST00000261609|HERC2;ENST00000570209.1_1_15:31108772-31126588:+|nuORF	ENSG00000128731|ENST00000261609|HERC2	ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	OvCa9_classI_Rep3	3	496.2665100097656	2	496.263999	990.513445	1.8637	0.0009249	1.0785	0.0005352	2.9422	0.0014601	496.2643848501877	59.438	2.028	56.339	55.347	57.375	-3.0993					83	55	2	0	0	0	0.65371	1	1908	1908		25.574	4.6271	1	32593			47742	3901	39617	39638	51173	51173					0.01780883409139733
RDPLVSEGGP	10	Unmodified	_RDPLVSEGGP_					0	0	0		nc|ENSG00000012211|O43900-2|PRICKLE3;ENSG00000012211|ENST00000599218|PRICKLE3	nc|ENSG00000012211|O43900-2|PRICKLE3	nc|ENSG00000012211|O43900-2|PRICKLE3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.7880249023438	2	513.764363	1025.51417	-0.061845	-3.1774E-05	-0.63141	-0.00032439	-0.69325	-0.00035617	513.7639554957887	38.962	1.2897	36.036	35.354	36.643	-2.9264					32	25	2	0	0	0	0.026606	1	1609	1609		62.107	26.489	1	32051			47743	974	39618	39639	51174	51174					0.0024367805820020294
RDPLVSEGGP	10	Unmodified	_RDPLVSEGGP_					0	0	0		nc|ENSG00000012211|O43900-2|PRICKLE3;ENSG00000012211|ENST00000599218|PRICKLE3	nc|ENSG00000012211|O43900-2|PRICKLE3	nc|ENSG00000012211|O43900-2|PRICKLE3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	513.764363	1025.51417	-1.0199	-0.00052397	0.62405	0.00032061	-0.39582	-0.00020336	513.7646678243217	38.92	0.4954	36.211	36.013	36.509	-2.7097	0.087406	0.00062137	NaN	62.107	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20570			47744	974	39618	39639							0.0024367805820020294
RDPNRCYNKK	10	Unmodified	_RDPNRCYNKK_					0	0	0			REV__ENSG00000122194|ENST00000308192|PLG	REV__ENSG00000122194|ENST00000308192|PLG	MULTI-SECPEP	OvCa9_classI_Rep2	2	431.5669860839844	3	431.887539	1292.64079	-0.1514	-6.5386E-05	3.6127	0.0015603	3.4613	0.0014949	431.88862553031754	72.541	0.52357	70.141	69.907	70.43	-2.3999					12	9	2	0	0	0	0.026688	1	5891	5891		53.089	5.8613	1	5784.7	+		47745	18582	39619	39640	51175	51175					0.0061728101165954286
RDPRALLGA	9	Unmodified	_RDPRALLGA_					0	0	0		ENSG00000059588|ENST00000040877|TARBP1;TARBP1|p.L782Pfs*50|1|0.06|ENSG00000059588|chr1:234433459-234433460|-/CTGTGGGAAGGAGGGGGAAAGGCATTAGACAGTG|frameshift_variant;TARBP1|p.V1274Dfs*15|1|0.03|ENSG00000059588|chr1:234406071-234406072|-/GATGAAAAAT|frameshift_variant	ENSG00000059588|ENST00000040877|TARBP1	ENSG00000059588|ENST00000040877|TARBP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.2607421875	2	484.785433	967.556313	-0.55154	-0.00026738	0.58244	0.00028236	0.030905	1.4982E-05	484.7855324348961	38.23	0.63652	38.23	37.983	38.619	0					29	13	3	0	0	0	0.027462	1	2180	2180		18.324	0	1	491820			47746	1254	39620	39641	51176	51176					0.07123698257237265
RDQPQLEALQ	10	Unmodified	_RDQPQLEALQ_					0	0	0			REV__ENSG00000105697|ENST00000222304|HAMP	REV__ENSG00000105697|ENST00000222304|HAMP	MULTI-MSMS	OvCa9_classI_Rep2	2	599.3117065429688	2	599.314751	1196.61495	-1.4774	-0.0008854	-3.3844	-0.0020283	-4.8617	-0.0029137	599.3125920502436	68.519	1.8365	65.899	65.229	67.066	-2.6203					106	36	5	0	0	0	0.32926	2	5404	5400;5404		77.318	9.2637	1	554290	+		47747	17749	39621	39642	51177;51178	51178					0.024507100410573912
RDQTLNAL	8	Unmodified	_RDQTLNAL_					0	0	0		tr|A0A7D6VVN7|A0A7D6VVN7_9CLOTATP-dependentzincmetalloproteaseFtsHOS=ClostridiumintestinaleOX=36845GN=hflBPE=3SV=1	tr|A0A7D6VVN7|A0A7D6VVN7_9CLOTATP-dependentzincmetalloproteaseFtsHOS=ClostridiumintestinaleOX=36845GN=hflBPE=3SV=1	tr|A0A7D6VVN7|A0A7D6VVN7_9CLOTATP-dependentzincmetalloproteaseFtsHOS=ClostridiumintestinaleOX=36845GN=hflBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	465.7531433105469	2	465.753798	929.493044	-0.59884	-0.00027891	-0.26594	-0.00012386	-0.86478	-0.00040278	465.75348977247216	47.109	0.79227	44.399	44.192	44.984	-2.7097					37	15	3	0	0	0	0.67745	1	2862	2862		47.916	0.25827	1	315460			47748	35228	39622	39643	51179	51179					0.025477127493331864
RDRERRRRQRR	11	Unmodified	_RDRERRRRQRR_					0	0	0			REV__ENST00000452135.6_3_5:179707603-179719088:-|nuORF	REV__ENST00000452135.6_3_5:179707603-179719088:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.3207397460938	3	547.323132	1638.94757	-0.44543	-0.0002438	-3.6294	-0.0019865	-4.0748	-0.0022303	547.3211396630616	21.57	1.3162	20.231	19.864	21.18	-1.3386					81	25	4	0	0	0	0.72582	1	207	207		3.026	1.6072	1	240140	+		47749	25976	39623	39644	51180	51180					0.15365067008656297
RDRIKSSIYK	10	Unmodified	_RDRIKSSIYK_					0	0	0		tr|A0A7D6VUT6|A0A7D6VUT6_9CLOTTranscription-repair-couplingfactorOS=ClostridiumintestinaleOX=36845GN=mfdPE=3SV=1	tr|A0A7D6VUT6|A0A7D6VUT6_9CLOTTranscription-repair-couplingfactorOS=ClostridiumintestinaleOX=36845GN=mfdPE=3SV=1	tr|A0A7D6VUT6|A0A7D6VUT6_9CLOTTranscription-repair-couplingfactorOS=ClostridiumintestinaleOX=36845GN=mfdPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.3729248046875	2	633.369861	1264.72517	-2.6571	-0.001683	1.5103	0.00095658	-1.1468	-0.00072637	633.3706685096566	150.42	2.9234	148.98	147.78	150.7	-1.4344					195	63	4	0	0	0	0.7759	1	14794	14794		21.96	1.9631	1	147740			47750	35199	39624	39645	51181	51181					0.1033955510006308
RDRIKSSIYK	10	Unmodified	_RDRIKSSIYK_					0	0	0		tr|A0A7D6VUT6|A0A7D6VUT6_9CLOTTranscription-repair-couplingfactorOS=ClostridiumintestinaleOX=36845GN=mfdPE=3SV=1	tr|A0A7D6VUT6|A0A7D6VUT6_9CLOTTranscription-repair-couplingfactorOS=ClostridiumintestinaleOX=36845GN=mfdPE=3SV=1	tr|A0A7D6VUT6|A0A7D6VUT6_9CLOTTranscription-repair-couplingfactorOS=ClostridiumintestinaleOX=36845GN=mfdPE=3SV=1	MSMS	OvCa9_classI_Rep4_	4	633.3729858398438	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	155.23	1	153.74	153.24	154.24	-1.4911								0	0	0	0.14301	1	15372	15372		19.997	0.89325	1				47751	35199	39624	39645	51182	51182					0.1033955510006308
RDSKIVVPPL	10	Unmodified	_RDSKIVVPPL_					0	0	0		ENST00000483560.1_1_X:70279478-70282733:-|nuORF;nc|ENSG00000147164|Q9UMY4-3|SNX12;ENSG00000147164|ENST00000374274|SNX12;nc|ENSG00000147164|Q9UMY4-1|SNX12	ENST00000483560.1_1_X:70279478-70282733:-|nuORF	ENST00000483560.1_1_X:70279478-70282733:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	562.343017578125	2	562.345323	1122.67609	-2.9015	-0.0016316	-0.70711	-0.00039764	-3.6086	-0.0020293	562.3448419475409	142.33	4.504	141.32	140	144.5	-1.0106					205	90	3	0	0	0	0.73378	1	11966	11966		26.693	0	1	106680			47752	5338	39625	39646	51183	51183					0.11966266811123205
RDSLHPPRL	9	Unmodified	_RDSLHPPRL_					0	0	0			REV__ENST00000390672.2_3_19:5783973-5784096:-|nuORF	REV__ENST00000390672.2_3_19:5783973-5784096:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	545.8123168945312	2	545.809439	1089.60433	-1.0624	-0.00057986	3.5109	0.0019163	2.4485	0.0013364	545.8110820459647	135.02	1.0828	133.9	133.65	134.74	-1.1226					47	21	4	0	0	0	0.40818	1	10900	10900		51.193	6.8155	1	105450	+		47753	25237	39626	39647	51184	51184					0.06310772177266699
RDSLPLPPVL	10	Unmodified	_RDSLPLPPVL_					0	0	0			REV__ENST00000523580.5_1_8:93929192-93978341:-|nuORF	REV__ENST00000523580.5_1_8:93929192-93978341:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8302612304688	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.66944	1	11885	11885		33.922	1.9668	1	308210	+		47754	27038	39627	39648	51185	51185					0.10094577919812764
RDSPVPLTL	9	Unmodified	_RDSPVPLTL_					0	0	0		ENST00000358600.7_1_19:14492235-14499295:+|nuORF;ENST00000599423.5_1_19:14879714-14887649:-|nuORF	ENST00000358600.7_1_19:14492235-14499295:+|nuORF	ENST00000358600.7_1_19:14492235-14499295:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	499.28778076171875	2	499.287474	996.560395	1.2353	0.00061678	-1.6971	-0.00084736	-0.46184	-0.00023059	499.286546654287	90.683	2.2781	89.381	88.929	91.207	-1.302					112	43	4	0	0	0	0.10363	2	8014	8014;8025		96.19	11.275	1	1027100			47755	10738	39628	39649	51186;51187	51186					0.061977429602734446
RDSPVPLTL	9	Unmodified	_RDSPVPLTL_					0	0	0		ENST00000358600.7_1_19:14492235-14499295:+|nuORF;ENST00000599423.5_1_19:14879714-14887649:-|nuORF	ENST00000358600.7_1_19:14492235-14499295:+|nuORF	ENST00000358600.7_1_19:14492235-14499295:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	499.28900146484375	2	499.287474	996.560395	-1.1559	-0.0005771	0.43608	0.00021773	-0.71978	-0.00035938	499.2876340721799	91.351	1.3453	89.327	88.879	90.225	-2.0241					77	26	4	0	0	0	0.14998	1	5717	5717		84.916	2.675	1	1681400			47756	10738	39628	39649	51188	51188					0.061977429602734446
RDVAHSSAK	9	Unmodified	_RDVAHSSAK_					0	0	0			REV__nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	REV__nc|ENSG00000291287|Q5SQ80|ANKRD20A2P	MULTI-MSMS	OvCa99_classI_Rep5	1	485.75457763671875	2	485.756872	969.499192	0.75625	0.00036735	-1.3861	-0.00067333	-0.62989	-0.00030598	485.7561067732326	152.65	0.79256	152.65	152.4	153.2	0					26	19	2	0	0	0	0.51865	1	17885	17885		40.778	5.6261	1	102410	+		47757	23563	39629	39650	51189	51189					0.013222309808497812
RDVFLLNSFGE	11	Unmodified	_RDVFLLNSFGE_					0	0	0			REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	REV__nc|ENSG00000080345|Q5UIP0-2|RIF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	649.3944091796875	2	648.832777	1295.651	2.0719	0.0013443	-1.5826	-0.0010269	0.48925	0.00031744	649.3344210049651	129.02	0.23094	129.02	128.84	129.07	0					6	4	2	0	0	0	0.025714	1	14963	14963		25.126	2.0835	1	73825	+		47758	17054	39630	39651	51190	51190					0.01500167217886883
RDVQPGEEL	9	Unmodified	_RDVQPGEEL_					0	0	0		ENSG00000112238|ENST00000369215|PRDM13	ENSG00000112238|ENST00000369215|PRDM13	ENSG00000112238|ENST00000369215|PRDM13	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.3355712890625	2	521.76182	1041.50909	0.05174	2.6996E-05	2.5116	0.0013104	2.5633	0.0013374	521.7618601624549	108.21	1.0252	107.01	106.64	107.67	-1.1978					63	19	5	0	0	0	0.027462	1	7688	7688		27.882	13.017	1	97908			47759	2888	39631	39652	51191	51191					-0.01000625804408628
RDVQPGEEL	9	Unmodified	_RDVQPGEEL_					0	0	0		ENSG00000112238|ENST00000369215|PRDM13	ENSG00000112238|ENST00000369215|PRDM13	ENSG00000112238|ENST00000369215|PRDM13	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.76182	1041.50909	0.42354	0.00022099	2.6022	0.0013577	3.0257	0.0015787	521.7631914926014	107.4	0.58017	107.09	106.87	107.45	-0.30836	0.077583	-0.0014199	NaN	27.882	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71534			47760	2888	39631	39652							-0.01000625804408628
RDVQPGEEL	9	Unmodified	_RDVQPGEEL_					0	0	0		ENSG00000112238|ENST00000369215|PRDM13	ENSG00000112238|ENST00000369215|PRDM13	ENSG00000112238|ENST00000369215|PRDM13	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	521.76182	1041.50909	-1.8304	-0.00095502	5.0429	0.0026312	3.2125	0.0016761	521.7643829396311	108.67	0.71044	106.94	106.67	107.38	-1.7256	-0.072848	0.001127	NaN	27.882	41	13	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106950			47761	2888	39631	39652							-0.01000625804408628
RDYSTELSVT	10	Unmodified	_RDYSTELSVT_					0	0	0		nc|ENSG00000169760|Q8N2Q7|NLGN1;nc|ENSG00000169760|Q8N2Q7-2|NLGN1;ENSG00000169760|ENST00000695368|NLGN1;ENSG00000169992|ENST00000302926|NLGN2;nc|ENSG00000165246|Q8NFZ3|NLGN4Y;ENSG00000165246|ENST00000684976|NLGN4Y;nc|ENSG00000165246|Q8NFZ3-2|NLGN4Y;ENSG00000146938|ENST00000381095|NLGN4X;nc|ENSG00000146938|Q8N0W4-2|NLGN4X;nc|ENSG00000196338|Q9NZ94-3|NLGN3;nc|ENSG00000196338|Q9NZ94-2|NLGN3;ENSG00000196338|ENST00000358741|NLGN3	nc|ENSG00000169760|Q8N2Q7|NLGN1;nc|ENSG00000165246|Q8NFZ3|NLGN4Y;nc|ENSG00000196338|Q9NZ94-3|NLGN3	nc|ENSG00000165246|Q8NFZ3|NLGN4Y	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.3126831054688	2	585.785492	1169.55643	1.9205	0.001125	3.1186	0.0018268	5.0391	0.0029518	585.7861025234722	85.89	0.44981	85.89	85.544	85.994	0					14	10	2	0	0	0	0.02706	1	9035	9035		37.812	16.974	1	197540			47762	6540;15175;8590	39632	39653	51192	51192					-0.021563913241152477
RDYSTELSVT	10	Unmodified	_RDYSTELSVT_					0	0	0		nc|ENSG00000169760|Q8N2Q7|NLGN1;nc|ENSG00000169760|Q8N2Q7-2|NLGN1;ENSG00000169760|ENST00000695368|NLGN1;ENSG00000169992|ENST00000302926|NLGN2;nc|ENSG00000165246|Q8NFZ3|NLGN4Y;ENSG00000165246|ENST00000684976|NLGN4Y;nc|ENSG00000165246|Q8NFZ3-2|NLGN4Y;ENSG00000146938|ENST00000381095|NLGN4X;nc|ENSG00000146938|Q8N0W4-2|NLGN4X;nc|ENSG00000196338|Q9NZ94-3|NLGN3;nc|ENSG00000196338|Q9NZ94-2|NLGN3;ENSG00000196338|ENST00000358741|NLGN3	nc|ENSG00000169760|Q8N2Q7|NLGN1;nc|ENSG00000165246|Q8NFZ3|NLGN4Y;nc|ENSG00000196338|Q9NZ94-3|NLGN3	nc|ENSG00000165246|Q8NFZ3|NLGN4Y	MULTI-MATCH	OvCa9_classI_Rep2	2		2	585.785492	1169.55643	1.186	0.00069476	1.6691	0.00097773	2.8551	0.0016725	585.7847569875338	87.633	0.73853	86.202	85.741	86.48	-1.4311	0.097159	-0.0021804	NaN	35.152	23	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19276			47763	6540;15175;8590	39632	39653							-0.021563913241152477
RDYSTELSVT	10	Unmodified	_RDYSTELSVT_					0	0	0		nc|ENSG00000169760|Q8N2Q7|NLGN1;nc|ENSG00000169760|Q8N2Q7-2|NLGN1;ENSG00000169760|ENST00000695368|NLGN1;ENSG00000169992|ENST00000302926|NLGN2;nc|ENSG00000165246|Q8NFZ3|NLGN4Y;ENSG00000165246|ENST00000684976|NLGN4Y;nc|ENSG00000165246|Q8NFZ3-2|NLGN4Y;ENSG00000146938|ENST00000381095|NLGN4X;nc|ENSG00000146938|Q8N0W4-2|NLGN4X;nc|ENSG00000196338|Q9NZ94-3|NLGN3;nc|ENSG00000196338|Q9NZ94-2|NLGN3;ENSG00000196338|ENST00000358741|NLGN3	nc|ENSG00000169760|Q8N2Q7|NLGN1;nc|ENSG00000165246|Q8NFZ3|NLGN4Y;nc|ENSG00000196338|Q9NZ94-3|NLGN3	nc|ENSG00000165246|Q8NFZ3|NLGN4Y	MULTI-MATCH	OvCa9_classI_Rep3	3		2	585.785492	1169.55643	-1.888	-0.001106	5.9823	0.0035044	4.0943	0.0023984	586.2920218975405	88.353	0.60705	86.222	85.854	86.461	-2.1309	0.11744	0.0028729	NaN	35.152	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28888			47764	6540;15175;8590	39632	39653							-0.021563913241152477
REAAATEIRRA	11	Unmodified	_REAAATEIRRA_					0	0	0		ENSG00000175029|ENST00000309035|CTBP2;ENST00000513884.1_1_5:97912076-97912961:+|nuORF;nc|ENSG00000175029|P56545|CTBP2;nc|ENSG00000175029|P56545-3|CTBP2	ENSG00000175029|ENST00000309035|CTBP2	ENSG00000175029|ENST00000309035|CTBP2	MULTI-MSMS	OvCa9_classI_Rep2	2	622.347412109375	2	622.346917	1242.67928	-2.1525	-0.0013396	4.222	0.0026275	2.0694	0.0012879	622.3494484147533	118.64	1.3857	118.49	117.99	119.37	-0.14755					77	27	4	0	0	0	0.39136	2	11412	11399;11412		61.765	3.5767	1	306460			47765	7507	39633	39654	51193;51194	51194					0.06764909917842488
READEDLLE	9	Unmodified	_READEDLLE_					0	0	0		ENSG00000157014|ENST00000448281|TATDN2	ENSG00000157014|ENST00000448281|TATDN2	ENSG00000157014|ENST00000448281|TATDN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.2513427734375	2	545.256568	1088.49858	-1.1451	-0.00062438	-4.2221	-0.0023021	-5.3672	-0.0029265	545.254136098056	109.03	1.3968	107.3	106.97	108.37	-1.7256					73	26	4	0	0	0	0.44568	1	10008	10008		47.657	1.6851	1	269880			47766	5869	39634	39655	51195	51195					-0.042126532495103675
READFKETL	9	Unmodified	_READFKETL_					0	0	0		nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-4|KIF20B;KIF20B|p.N883Ifs*5|1|0.26|ENSG00000138182|chr10:89737489-89737511|ATAATGAAGGACTGAGAGCATTT/-|frameshift_variant	nc|ENSG00000138182|Q96Q89-3|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	MULTI-MSMS	OvCa99_classI_Rep5	1	554.7869262695312	2	554.785296	1107.55604	0.13162	7.3019E-05	-0.46205	-0.00025634	-0.33043	-0.00018332	554.7846140675646	56.991	0.56276	56.991	56.833	57.396	0					21	12	3	0	0	0	0.17606	1	4765	4765		80.455	0.74203	1	1410400			47767	4667	39635	39656	51196	51196					0.006562337467130419
REAEAAIYHL	10	Unmodified	_REAEAAIYHL_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;ENSG00000067225|ENST00000335181|PKM;ENST00000563986.1_1_15:72494793-72499131:-|nuORF	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	MULTI-MSMS	OvCa99_classI_Rep5	1	586.8086547851562	2	586.806562	1171.59857	-0.63142	-0.00037052	0.13049	7.6574E-05	-0.50093	-0.00029395	586.8063661913129	67.838	0.74868	67.838	67.566	68.315	0					50	18	4	0	0	0	0.47142	1	6378	6378		58.23	1.5089	1	2470600			47768	1372	39636	39657	51197	51197					0.019636288749325104
REAEESSKI	9	Unmodified	_REAEESSKI_					0	0	0		ENSG00000182934|ENST00000332118|SRPRA;nc|ENSG00000182934|P08240-2|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	ENSG00000182934|ENST00000332118|SRPRA	MSMS	OvCa99_classI_Rep5	1	524.7665405273438	2	524.767103	1047.51965	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.405	1	29.405	28.905	29.905	0								0	0	0	0.054374	1	1046	1046		77.318	10.888	1				47769	8040	39637	39658	51198	51198					-0.0022064315000989154
REAEETQSTL	10	Unmodified	_REAEETQSTL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	582.2802124023438	2	582.280574	1162.5466	-1.1079	-0.00064509	0.37303	0.00021721	-0.73485	-0.00042789	582.2808247793729	41.919	1.3329	41.919	41.594	42.926	0					112	30	5	0	0	0	0.05917	4	2662	2638;2662;2686;2714		125.68	24.429	1	22565000			47770	3744	39638	39659	51199;51200;51201;51202	51200					-0.028175793294849427
REAEETQSTL	10	Unmodified	_REAEETQSTL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	OvCa9_classI_Rep2	2	582.2818603515625	2	582.280574	1162.5466	-0.63716	-0.000371	0.38636	0.00022497	-0.2508	-0.00014604	582.2807891573182	46.579	0.94223	43.869	43.547	44.489	-2.7097					53	18	4	0	0	0	0.36605	1	2785	2785		72.879	1.0018	1	251820			47771	3744	39638	39659	51203	51203					-0.028175793294849427
REAEETQSTL	10	Unmodified	_REAEETQSTL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	582.2821044921875	2	582.280574	1162.5466	-1.1627	-0.00067702	1.0706	0.00062339	-0.092112	-5.3635E-05	582.2812564143637	46.548	1.6391	43.475	42.927	44.566	-3.0724					71	31	3	0	0	0	0.31125	1	2441	2441		79.489	11.995	1	1597200			47772	3744	39638	39659	51204	51204					-0.028175793294849427
REAEETQSTL	10	Unmodified	_REAEETQSTL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	582.280574	1162.5466	-1.7832	-0.0010383	0.81773	0.00047615	-0.96549	-0.00056219	582.2808561715306	45.083	0.77992	42.044	41.867	42.647	-3.0385	0.062476	0.00050771	NaN	125.68	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31800			47773	3744	39638	39659							-0.028175793294849427
REAEGQLQKL	10	Unmodified	_REAEGQLQKL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	OvCa99_classI_Rep5	1	586.323974609375	2	586.325119	1170.63569	0.020215	1.1852E-05	-4.1154	-0.002413	-4.0952	-0.0024011	586.3223966241791	46.347	0.74059	46.347	46.112	46.852	0					35	16	3	0	0	0	0.42298	1	3262	3262		65.157	0.94998	1	4763100			47774	7740	39639	39660	51205	51205					0.057193004207192644
REAEHLYHTL	10	Unmodified	_REAEHLYHTL_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-MSMS	OvCa99_classI_Rep5	1	423.5511474609375	3	423.550921	1267.63093	-0.00064099	-2.7149E-07	0.068144	2.8862E-05	0.067503	2.8591E-05	423.5508652244692	47.472	0.99598	47.472	47.208	48.204	0					61	22	5	0	0	0	0.31125	1	3426	3426		79.489	22.857	1	2127100			47775	1506	39640	39661	51206	51206					0.007824162779343169
REAEMERALL	10	Unmodified	_REAEMERALL_					0	0	0		ENST00000532517.5_1_11:118498004-118527530:+|nuORF;nc|ENSG00000019144|Q86UU1-2|PHLDB1;ENSG00000019144|ENST00000600882|PHLDB1;nc|ENSG00000019144|Q86UU1-3|PHLDB1	ENST00000532517.5_1_11:118498004-118527530:+|nuORF	ENST00000532517.5_1_11:118498004-118527530:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	609.3212890625	2	609.31898	1216.62341	0.36128	0.00022014	0.39041	0.00023788	0.75169	0.00045802	609.318932025241	67.422	0.82437	67.422	67.055	67.88	0					63	20	5	0	0	0	0.22073	1	6302	6302		91.265	5.4034	1	4392600			47776	1016	39641	39662	51207	51207					0.023759406860108356
REAEMRNSIL	10	Unmodified	_REAEMRNSIL_					0	0	0		ENSG00000105185|ENST00000590247|PDCD5;nc|ENSG00000105185|O14737-2|PDCD5	ENSG00000105185|ENST00000590247|PDCD5	ENSG00000105185|ENST00000590247|PDCD5	MULTI-MSMS	OvCa99_classI_Rep5	1	609.819091796875	2	609.816604	1217.61866	0.44606	0.00027202	-0.20951	-0.00012776	0.23655	0.00014425	609.8160326321832	57.92	0.58947	57.92	57.691	58.28	0					30	13	3	0	0	0	0.13794	1	4891	4891		104.01	31.134	1	1724100			47777	2426	39642	39663	51208	51208					0.018550565432633448
REAEQRRAYL	10	Unmodified	_REAEQRRAYL_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep2	2	646.3467407226562	2	646.346917	1290.67928	-1.2412	-0.00080222	1.3606	0.00087943	0.11946	7.7212E-05	646.3477237536227	39.942	1.5339	37.233	37.002	38.536	-2.7097					82	30	4	0	0	0	0.38633	3	1984	1984;1990;2003		58.23	10.27	1	358920			47778	9301;12432	39643	39664	51209;51210;51211	51209					0.04556909917846497
REAEQRRAYL	10	Unmodified	_REAEQRRAYL_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep2	2	431.2329406738281	3	431.233704	1290.67928	-0.65762	-0.00028359	0.44171	0.00019048	-0.21592	-9.311E-05	431.23389730645385	39.936	1.5833	37.227	36.953	38.536	-2.7097					108	31	5	0	0	0	0.50873	1	1995	1995		53.089	3.0554	1	918010			47779	9301;12432	39643	39664	51212	51212					0.04556909917846497
REAEQRRAYL	10	Unmodified	_REAEQRRAYL_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep4_	4	646.3467407226562	2	646.346917	1290.67928	-0.12808	-8.2783E-05	-0.012471	-8.0604E-06	-0.14055	-9.0844E-05	646.3469544904533	40.19	1.9725	37.236	37.012	38.985	-2.9541					103	37	5	0	0	0	0.073842	4	1738	1702;1712;1726;1738		107.01	20.366	1	1317500			47780	9301;12432	39643	39664	51213;51214;51215;51216	51216					0.04556909917846497
REAEQRRAYL	10	Unmodified	_REAEQRRAYL_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep4_	4	431.2333068847656	3	431.233704	1290.67928	0.32719	0.00014109	-0.62104	-0.00026782	-0.29386	-0.00012672	431.23348895655243	40.197	2.2301	37.243	36.963	39.193	-2.9541					131	42	5	0	0	0	0.41036	1	1711	1711		66.962	8.3323	1	2708400			47781	9301;12432	39643	39664	51217	51217					0.04556909917846497
REAIPTNAL	9	Unmodified	_REAIPTNAL_					0	0	0		ENSG00000184361|ENST00000331780|SPATA32	ENSG00000184361|ENST00000331780|SPATA32	ENSG00000184361|ENST00000331780|SPATA32	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.2917785644531	2	492.777274	983.539994	0.76857	0.00037873	-0.45563	-0.00022452	0.31294	0.00015421	492.77665038247767	83.016	1.1448	81.418	80.54	81.685	-1.5988					43	22	3	0	0	0	0.027462	1	7087	7087		49.536	5.1589	1	62468			47782	8150	39644	39665	51218	51218					0.04756572300470907
REALVSKEISP	11	Unmodified	_REALVSKEISP_					0	0	0		ENSG00000221909|ENST00000449309|FAM200A	ENSG00000221909|ENST00000449309|FAM200A	ENSG00000221909|ENST00000449309|FAM200A	MULTI-MSMS	OvCa9_classI_Rep3	3	614.849609375	2	614.848427	1227.6823	1.5497	0.00095282	-1.8296	-0.0011249	-0.27992	-0.00017211	614.8472816417542	79.666	1.1639	77.326	77.053	78.217	-2.3399					74	22	4	0	0	0	0.54114	1	4316	4316		50.034	13.587	1	549070			47783	9234	39645	39666	51219	51219					0.07756740251988958
REAPERPSL	9	Unmodified	_REAPERPSL_					0	0	0		ENSG00000107672|ENST00000369023|NSMCE4A;nc|ENSG00000107672|Q9NXX6-2|NSMCE4A;ENST00000489266.5_1_10:123734227-123734680:-|nuORF	ENSG00000107672|ENST00000369023|NSMCE4A	ENSG00000107672|ENST00000369023|NSMCE4A	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.7843017578125	2	527.78563	1053.55671	-2.5293	-0.0013349	1.988	0.0010492	-0.54128	-0.00028568	527.7867534632879	50.014	1.1966	46.872	46.455	47.651	-3.1416					46	22	4	0	0	0	0.18887	1	2855	2855		78.264	0.9462	1	329320			47784	2608	39646	39667	51220	51220					0.03207073186422349
REAQSAQLAQR	11	Unmodified	_REAQSAQLAQR_					0	0	0			REV__CGN|p.A1165Vfs*12|1|0.11|ENSG00000143375|chr1:151537227-151537228|-/TTAGA|frameshift_variant	REV__CGN|p.A1165Vfs*12|1|0.11|ENSG00000143375|chr1:151537227-151537228|-/TTAGA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	419.8931579589844	3	419.893459	1256.65855	0.27943	0.00011733	-0.32958	-0.00013839	-0.050145	-2.1056E-05	419.893291642718	30.657	0.6882	30.657	30.483	31.171	0					31	13	4	0	0	0	0.70032	1	1195	1195		29.551	1.4693	1	227970	+		47785	15785	39647	39668	51221	51221					0.040483195381511905
REAQVNVRM	9	Unmodified	_REAQVNVRM_					0	0	0		THRAP3|p.F819Cfs*5|1|0.27|ENSG00000054118|chr1:36301037-36301038|TT/-|frameshift_variant;THRAP3|p.Q861Kfs*35|1|0.06|ENSG00000054118|chr1:36301627-36301627|T/-|frameshift_variant;ENSG00000054118|ENST00000354618|THRAP3	THRAP3|p.F819Cfs*5|1|0.27|ENSG00000054118|chr1:36301037-36301038|TT/-|frameshift_variant	THRAP3|p.F819Cfs*5|1|0.27|ENSG00000054118|chr1:36301037-36301038|TT/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	551.7943725585938	2	551.792932	1101.57131	-0.020965	-1.1568E-05	-0.25006	-0.00013798	-0.27102	-0.00014955	551.7925605562069	46.478	0.60998	46.478	46.242	46.852	0					36	13	4	0	0	0	0.2422	1	3289	3289		69.628	25.25	1	1864400			47786	1204	39648	39669	51222	51222					0.02458822062908439
REASSVSEEL	10	Unmodified	_REASSVSEEL_					0	0	0		ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MSMS	OvCa99_classI_Rep5	1	553.7743530273438	2	553.769842	1105.52513	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.101	1	56.101	55.601	56.601	0								0	0	0	0.085576	1	4633	4633		76.17	26.728	1				47787	4871	39649	39670	51223	51223					-0.02340964358177189
REAVKAASDEL	11	Unmodified	_REAVKAASDEL_					0	0	0		VCL-ADK|2|fusion;VCL|p.R832Efs*23|1|0.05|ENSG00000035403|chr10:74107288-74107288|C/-|frameshift_variant;VCL-ADK|1|fusion;VCL-ADK|4|fusion;nc|ENSG00000035403|P18206-2|VCL;VCL-ADK|13|fusion;ENSG00000035403|ENST00000211998|VCL	VCL-ADK|2|fusion	VCL-ADK|2|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	594.8141479492188	2	594.814584	1187.61462	-0.12914	-7.6816E-05	-0.3819	-0.00022716	-0.51104	-0.00030398	594.8142707239632	44.817	0.71774	44.817	44.484	45.202	0					31	15	3	0	0	0	0.34309	1	3056	3056		65.278	15.836	1	1142700			47788	1081	39650	39671	51224	51224					0.02831290321182678
REDDQYSHL	9	Unmodified	_REDDQYSHL_					0	0	0		ENSG00000160654|ENST00000532917|CD3G	ENSG00000160654|ENST00000532917|CD3G	ENSG00000160654|ENST00000532917|CD3G	MULTI-MSMS	OvCa99_classI_Rep5	1	581.7595825195312	2	581.759809	1161.50507	-0.64861	-0.00037734	0.25095	0.00014599	-0.39766	-0.00023134	581.7598404936889	44.772	0.84069	44.772	44.573	45.413	0					39	18	5	0	0	0	0.084152	1	3055	3055		101.46	2.8305	1	1599100			47789	6077	39651	39672	51225	51225					-0.06922715298128423
REDEKPLVL	9	Unmodified	_REDEKPLVL_					0	0	0		ENSG00000090971|ENST00000205194|NAT14	ENSG00000090971|ENST00000205194|NAT14	ENSG00000090971|ENST00000205194|NAT14	MULTI-MSMS	OvCa99_classI_Rep5	1	549.809814453125	2	549.811313	1097.60807	-0.0044442	-2.4435E-06	0.18714	0.00010289	0.18269	0.00010045	549.8113050570199	62.521	1.2113	62.521	62.165	63.376	0					92	29	5	0	0	0	0.3076	1	5557	5557		62.107	8.756	1	9998900			47790	1854	39652	39673	51226	51226					0.06317397160455585
REDIKELFL	9	Unmodified	_REDIKELFL_					0	0	0		ENSG00000112799|ENST00000230568|LY86	ENSG00000112799|ENST00000230568|LY86	ENSG00000112799|ENST00000230568|LY86	MULTI-MSMS	OvCa99_classI_Rep5	1	581.8278198242188	2	581.826963	1161.63937	0.97036	0.00056458	1.2379	0.00072026	2.2083	0.0012848	581.8274676040285	98.35	0.6853	98.35	98.079	98.764	0					34	15	3	0	0	0	0.32653	1	10836	10836		59.931	6.8418	1	757430			47791	2928	39653	39674	51227	51227					0.06501970194563
REDKEAAKL	9	Unmodified	_REDKEAAKL_					0	0	0		nc|ENSG00000143793|Q9BU76-3|MMTAG2;ENST00000465199.5_1_1:228289779-228291093:-|nuORF;ENST00000485896.5_1_1:228289992-228290982:-|nuORF;nc|ENSG00000143793|Q9BU76-4|MMTAG2;ENST00000472617.5_1_1:228289581-228290982:-|nuORF;ENST00000491293.1_1_1:228289992-228290982:-|nuORF;ENSG00000143793|ENST00000272139|C1orf35	nc|ENSG00000143793|Q9BU76-3|MMTAG2	nc|ENSG00000143793|Q9BU76-3|MMTAG2	MULTI-MSMS	OvCa99_classI_Rep5	1	530.2920532226562	2	530.293288	1058.57202	-0.71409	-0.00037868	0.11516	6.1069E-05	-0.59893	-0.00031761	530.2933335436732	28.659	0.5481	28.659	28.439	28.987	0					27	10	4	0	0	0	0.22035	1	950	950		72.879	8.672	1	461530			47792	5094	39654	39675	51228	51228					0.04507939983614051
REDMIDIKL	9	Unmodified	_REDMIDIKL_					0	0	0		nc|ENSG00000175582|P20340-3|RAB6A;FAM168A-RAB6A|3|fusion;nc|ENSG00000175582|P20340-4|RAB6A;nc|ENSG00000175582|P20340-2|RAB6A;ENSG00000175582|ENST00000336083|RAB6A;FAM168A-RAB6A|2|fusion;FAM168A-RAB6A|1|fusion	nc|ENSG00000175582|P20340-3|RAB6A	nc|ENSG00000175582|P20340-3|RAB6A	MULTI-MSMS	OvCa99_classI_Rep5	1	566.8067626953125	2	566.805174	1131.59579	1.6936	0.00095992	0.86847	0.00049225	2.562	0.0014522	566.8055867307901	93.611	0.7496	93.611	93.386	94.136	0					30	17	2	0	0	0	0.18887	1	10180	10180		78.264	11.835	1	9392700			47793	7553	39655	39676	51229	51229					0.03526037425785944
REDNQTNRL	9	Unmodified	_REDNQTNRL_					0	0	0		DLGAP1-GNAS|20|fusion;DLGAP1-GNAS|17|fusion;DLGAP1-GNAS|18|fusion;DLGAP1-GNAS|19|fusion;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;DLGAP1-GNAS|21|fusion;DLGAP1-GNAS|14|fusion;DLGAP1-GNAS|15|fusion;ENSG00000087460|ENST00000371085|GNAS;DLGAP1-GNAS|23|fusion;SETD3-GNAS|1|fusion;SETD3-GNAS|4|fusion;DLGAP1-GNAS|3|fusion;SETD3-GNAS|2|fusion;SETD3-GNAS|3|fusion;nc|ENSG00000087460|P63092-4|GNAS;CADM1-GNAS|4|fusion;DLGAP1-GNAS|24|fusion;DLGAP1-GNAS|11|fusion;DLGAP1-GNAS|2|fusion;nc|ENSG00000087460|P63092-2|GNAS;DLGAP1-GNAS|10|fusion;DLGAP1-GNAS|13|fusion;DLGAP1-GNAS|16|fusion;DLGAP1-GNAS|1|fusion;DLGAP1-GNAS|4|fusion;DLGAP1-GNAS|7|fusion;DLGAP1-GNAS|9|fusion;DLGAP1-GNAS|6|fusion;DLGAP1-GNAS|12|fusion;DLGAP1-GNAS|5|fusion;DLGAP1-GNAS|8|fusion;DLGAP1-GNAS|22|fusion;CADM1-GNAS|1|fusion;SDCCAG8-GNAS|2|fusion;nc|ENSG00000087460|P63092-3|GNAS;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;SDCCAG8-GNAS|4|fusion;SDCCAG8-GNAS|1|fusion;CADM1-GNAS|2|fusion;CADM1-GNAS|3|fusion;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;SDCCAG8-GNAS|3|fusion;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS	DLGAP1-GNAS|20|fusion;nc|ENSG00000087460|Q5JWF2-2|GNAS	DLGAP1-GNAS|20|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	573.2863159179688	2	573.286525	1144.5585	-0.32525	-0.00018646	1.2576	0.00072096	0.93234	0.0005345	573.2861870700847	30.25	1.9723	30.25	29.785	31.757	0					139	39	7	0	0	0	0.030867	1	1126	1126		134.77	21.354	1	13380000			47794	739;14909	39656	39677	51230	51230					-0.007999177956207859
REDNQTNRL	9	Unmodified	_REDNQTNRL_					0	0	0		DLGAP1-GNAS|20|fusion;DLGAP1-GNAS|17|fusion;DLGAP1-GNAS|18|fusion;DLGAP1-GNAS|19|fusion;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;DLGAP1-GNAS|21|fusion;DLGAP1-GNAS|14|fusion;DLGAP1-GNAS|15|fusion;ENSG00000087460|ENST00000371085|GNAS;DLGAP1-GNAS|23|fusion;SETD3-GNAS|1|fusion;SETD3-GNAS|4|fusion;DLGAP1-GNAS|3|fusion;SETD3-GNAS|2|fusion;SETD3-GNAS|3|fusion;nc|ENSG00000087460|P63092-4|GNAS;CADM1-GNAS|4|fusion;DLGAP1-GNAS|24|fusion;DLGAP1-GNAS|11|fusion;DLGAP1-GNAS|2|fusion;nc|ENSG00000087460|P63092-2|GNAS;DLGAP1-GNAS|10|fusion;DLGAP1-GNAS|13|fusion;DLGAP1-GNAS|16|fusion;DLGAP1-GNAS|1|fusion;DLGAP1-GNAS|4|fusion;DLGAP1-GNAS|7|fusion;DLGAP1-GNAS|9|fusion;DLGAP1-GNAS|6|fusion;DLGAP1-GNAS|12|fusion;DLGAP1-GNAS|5|fusion;DLGAP1-GNAS|8|fusion;DLGAP1-GNAS|22|fusion;CADM1-GNAS|1|fusion;SDCCAG8-GNAS|2|fusion;nc|ENSG00000087460|P63092-3|GNAS;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;SDCCAG8-GNAS|4|fusion;SDCCAG8-GNAS|1|fusion;CADM1-GNAS|2|fusion;CADM1-GNAS|3|fusion;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;SDCCAG8-GNAS|3|fusion;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS	DLGAP1-GNAS|20|fusion;nc|ENSG00000087460|Q5JWF2-2|GNAS	DLGAP1-GNAS|20|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	573.2864379882812	2	573.286525	1144.5585	-2.5831	-0.0014808	2.396	0.0013736	-0.18704	-0.00010723	573.2878155681369	34.545	1.0883	31.835	31.612	32.701	-2.7097					58	21	5	0	0	0	0.084918	1	1331	1331		101.25	18.502	1	313120			47795	739;14909	39656	39677	51231	51231					-0.007999177956207859
REDSQRPGAHL	11	Unmodified	_REDSQRPGAHL_					0	0	0		ENSG00000135486|ENST00000340913|HNRNPA1;nc|ENSG00000135486|P09651-2|HNRNPA1;chr12:54282662-54282800|429|217.16|0.0|24.37|+|ENST00000677249|HNRNPA1,HNRNPA1;nc|ENSG00000135486|P09651-3|HNRNPA1;ENSG00000139675|ENST00000357495|HNRNPA1L2;ENST00000422644.2_1_X:73693403-73693721:-|nuORF;ENST00000444886.1_1_9:128358162-128358726:+|nuORF;ENST00000510646.1_1_5:135764749-135765112:+|nuORF;ENST00000457695.2_1_X:100110922-100111255:-|nuORF;ENST00000546565.1_1_12:93277549-93277891:+|nuORF;ENST00000458678.1_1_1:241083162-241083366:+|nuORF;ENST00000391992.3_1_12:9180728-9181528:-|nuORF	ENSG00000135486|ENST00000340913|HNRNPA1	ENSG00000135486|ENST00000340913|HNRNPA1	MULTI-MSMS	OvCa99_classI_Rep5	1	633.3211669921875	2	633.320899	1264.62725	0.42166	0.00026705	-0.73048	-0.00046263	-0.30882	-0.00019558	633.3203744546845	32.429	0.49543	32.429	32.204	32.7	0					25	9	3	0	0	0	0.11855	1	1411	1411		93.143	10.393	1	453420			47796	322	39657	39678	51232	51232					0.005517465041066316
REDSRPSIK	9	Unmodified	_REDSRPSIK_					0	0	0		ENST00000602725.5_1_1:32373441-32373519:-|nuORF	ENST00000602725.5_1_1:32373441-32373519:-|nuORF	ENST00000602725.5_1_1:32373441-32373519:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	544.2960205078125	2	544.296362	1086.57817	1.7002	0.00092542	-0.70673	-0.00038467	0.99348	0.00054075	544.2957460381283	28.078	0.84905	25.368	25.15	25.999	-2.7097					27	17	2	0	0	0	0.69403	1	543	543		19.997	2.6318	1	48650			47797	14248	39658	39679	51233	51233					0.038344582151466966
REDYPQKEIL	10	Unmodified	_REDYPQKEIL_					0	0	0		ENSG00000166532|ENST00000535829|RIMKLB;nc|ENSG00000166532|Q9ULI2-2|RIMKLB;ENST00000538758.1_1_12:8866453-8866651:+|nuORF	ENSG00000166532|ENST00000535829|RIMKLB	ENSG00000166532|ENST00000535829|RIMKLB	MSMS	OvCa99_classI_Rep5	1	645.8462524414062	2	645.838059	1289.66157	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.35	1	62.35	61.85	62.85	0								0	0	0	0.043807	1	5546	5546		109.44	5.4252	1				47798	6690	39659	39680	51234	51234					0.02832149872347145
REEARGAALPP	11	Unmodified	_REEARGAALPP_					0	0	0		ENST00000425818.2_1_15:66679590-66679719:+|nuORF	ENST00000425818.2_1_15:66679590-66679719:+|nuORF	ENST00000425818.2_1_15:66679590-66679719:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.8599243164062	2	583.817461	1165.62037	0.37325	0.00021791	1.0019	0.00058496	1.3752	0.00080286	583.8165549953402	159.95	0.19852	159.95	159.81	160.01	0					5	3	2	0	0	0	0.02539	1	18750	18750		51.193	8.7966	1	15543			47799	11728	39660	39681	51235	51235					0.04418433623504825
REEDEETQL	9	Unmodified	_REEDEETQL_					0	0	0		ENST00000514482.1_1_4:190862182-190882061:+|nuORF;ENSG00000109536|ENST00000226798|FRG1	ENST00000514482.1_1_4:190862182-190882061:+|nuORF	ENST00000514482.1_1_4:190862182-190882061:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	574.7576293945312	2	574.756932	1147.49931	-0.25643	-0.00014739	0.18226	0.00010476	-0.074169	-4.2629E-05	574.7569788831622	46.914	0.87711	46.914	46.631	47.508	0					56	19	5	0	0	0	0.14445	1	3337	3337		85.862	19.433	1	4195200			47800	2718	39661	39682	51236	51236					-0.0685385860047063
REEGFDRSTSL	11	Unmodified	_REEGFDRSTSL_					0	0	0		ENSG00000168209|ENST00000307365|DDIT4;DDIT4|p.A145Gfs*50|1|0.24|ENSG00000168209|chr10:72274916-72274917|-/G|frameshift_variant;ENST00000471240.1_1_10:74033815-74034322:+|nuORF	ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	MULTI-MSMS	OvCa99_classI_Rep5	1	648.8143920898438	2	648.812573	1295.61059	-0.29611	-0.00019212	0.22801	0.00014793	-0.068101	-4.4185E-05	648.8126279544839	55.152	0.54512	55.152	54.935	55.48	0					30	12	3	0	0	0	0.068772	1	4490	4490		106.88	19.184	1	2322900			47801	717	39662	39683	51237	51237					-0.025387991725210668
REEGKVAIW	9	Unmodified	_REEGKVAIW_					0	0	0		nc|ENSG00000105339|A2RUS2-2|DENND3;nc|ENSG00000105339|A2RUS2|DENND3;ENSG00000105339|ENST00000519811|DENND3	nc|ENSG00000105339|A2RUS2-2|DENND3	nc|ENSG00000105339|A2RUS2-2|DENND3	MULTI-MSMS	OvCa99_classI_Rep5	1	544.2941284179688	2	544.298373	1086.58219	-0.4096	-0.00022294	-3.7846	-0.00206	-4.1942	-0.0022829	544.2962177312693	48.771	0.66198	48.771	48.544	49.206	0					22	14	2	0	0	0	0.2784	1	3596	3596		65.465	4.4934	1	2265000			47802	2443	39663	39684	51238	51238					0.042365477088424086
REEKAKASEL	10	Unmodified	_REEKAKASEL_					0	0	0		nc|ENSG00000172661|Q9Y4E1-5|WASHC2C;nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000172661|ENST00000623400|WASHC2C;ENSG00000099290|ENST00000282633|WASHC2A	nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	MULTI-MSMS	OvCa99_classI_Rep5	1	580.8170776367188	2	580.817127	1159.6197	-1.3944	-0.00080986	1.1506	0.00066828	-0.24376	-0.00014158	580.8177446175622	27.715	0.54917	27.715	27.542	28.091	0					25	10	4	0	0	0	0.45953	1	840	840		59.931	5.1545	1	459250			47803	1966	39664	39685	51239	51239					0.04627594183830297
REEKEQHGL	9	Unmodified	_REEKEQHGL_					0	0	0		ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	ENSG00000102189|ENST00000322349|EEA1	MULTI-MSMS	OvCa99_classI_Rep5	1	563.2869873046875	2	563.285994	1124.55744	-0.18592	-0.00010472	0.12924	7.2797E-05	-0.05668	-3.1927E-05	563.2859989617673	25.467	0.79972	25.467	25.292	26.092	0					36	15	5	0	0	0	0.27001	1	574	574		66.429	9.9955	1	518680			47804	2227	39665	39686	51240	51240					0.00013867835468772682
REELKEKME	9	Unmodified	_REELKEKME_					0	0	0		nc|ENSG00000240021|Q5T0J7-3|TEX35;nc|ENSG00000240021|Q5T0J7-5|TEX35;nc|ENSG00000240021|Q5T0J7-2|TEX35;ENSG00000240021|ENST00000319416|TEX35	nc|ENSG00000240021|Q5T0J7-3|TEX35	nc|ENSG00000240021|Q5T0J7-3|TEX35	MULTI-MSMS	OvCa99_classI_Rep5	1	596.306396484375	2	596.305538	1190.59652	-0.17714	-0.00010563	-0.016386	-9.7709E-06	-0.19352	-0.0001154	596.3054687087324	46.961	7.1463	46.961	46.587	53.733	0					374	164	4	0	0	0	0.1804	1	3467	3467		79.713	5.7379	1	16604000			47805	9334	39666	39687	51241	51241					0.00884832074825681
REELKNNNK	9	Unmodified	_REELKNNNK_					0	0	0		tr|A0A7D6VTT1|A0A7D6VTT1_9CLOTPrimosomalproteinN'OS=ClostridiumintestinaleOX=36845GN=priAPE=3SV=1	tr|A0A7D6VTT1|A0A7D6VTT1_9CLOTPrimosomalproteinN'OS=ClostridiumintestinaleOX=36845GN=priAPE=3SV=1	tr|A0A7D6VTT1|A0A7D6VTT1_9CLOTPrimosomalproteinN'OS=ClostridiumintestinaleOX=36845GN=priAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	572.8086547851562	2	572.807094	1143.59963	-1.0075	-0.00057708	0.1498	8.5807E-05	-0.85767	-0.00049128	572.8071818803521	49.763	1.1266	49.763	49.206	50.332	0					48	21	3	0	0	0	0.23241	2	3732	3732;3757		70.816	3.3448	1	2788700			47806	35140	39667	39688	51242;51243	51242					0.03357843243838943
REELRSPKL	9	Unmodified	_REELRSPKL_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	OvCa99_classI_Rep5	1	564.3302001953125	2	564.330205	1126.64586	0.38491	0.00021722	-0.6858	-0.00038702	-0.30088	-0.0001698	564.3297165239959	45.018	1.0059	45.018	44.618	45.624	0					47	22	3	0	0	0	0.42576	1	3072	3072		49.536	3.5638	1	1082500			47807	5448	39668	39689	51244	51244					0.08759908145952977
REELSKQLDS	10	Unmodified	_REELSKQLDS_					0	0	0			REV__IL16|p.P611L|1|0.14|ENSG00000172349|chr15:81292967-81292967|C/T|missense_variant	REV__IL16|p.P611L|1|0.14|ENSG00000172349|chr15:81292967-81292967|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	602.81201171875	2	602.812042	1203.60953	-0.88442	-0.00053314	0.61607	0.00037138	-0.26835	-0.00016176	602.8123650703909	32.441	0.64286	29.731	29.53	30.173	-2.7097					28	12	3	0	0	0	0.67987	1	1074	1074		32.751	7.1765	1	41577	+		47808	28300	39669	39690	51245	51245					0.01586986458573847
REENAEQQAL	10	Unmodified	_REENAEQQAL_					0	0	0		ENSG00000108055|ENST00000361804|SMC3;SMC3|p.D489Ifs*18|1|0.47|ENSG00000108055|chr10:110589947-110589947|G/-|frameshift_variant;SMC3|p.A694Dfs*32|1|0.21|ENSG00000108055|chr10:110596514-110596515|-/ATTTTATCTTTGAAATCCAGGTTAAGAACCTC|frameshift_variant;SMC3|p.Q813Vfs*4|1|0.44|ENSG00000108055|chr10:110600447-110600448|AC/-|frameshift_variant	ENSG00000108055|ENST00000361804|SMC3	ENSG00000108055|ENST00000361804|SMC3	MULTI-MSMS	OvCa99_classI_Rep5	1	594.2870483398438	2	594.286191	1186.55783	-0.021725	-1.2911E-05	-0.23829	-0.00014161	-0.26002	-0.00015452	594.286058579549	43.117	0.85501	43.117	42.796	43.651	0					55	19	5	0	0	0	0.1266	1	2816	2816		106.88	39.387	1	2554400			47809	2636	39670	39691	51246	51246					-0.027987572353367796
REENKQIAL	9	Unmodified	_REENKQIAL_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MULTI-MSMS	OvCa99_classI_Rep5	1	550.806640625	2	550.806562	1099.59857	-0.61419	-0.0003383	-0.13865	-7.6369E-05	-0.75284	-0.00041467	550.8063942280106	44.635	1.7616	44.635	44.35	46.112	0					103	39	5	0	0	0	0.17606	2	3040	3040;3064		80.455	8.5771	1	27876000			47810	8904	39671	39692	51247;51248	51247					0.052756288749378655
REENKQIAL	9	Unmodified	_REENKQIAL_					0	0	0		ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	ENSG00000198900|ENST00000361337|TOP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.808349609375	2	550.806562	1099.59857	-1.5163	-0.00083516	1.2958	0.00071372	-0.22048	-0.00012144	550.8071596293769	50.301	1.6918	47.159	46.663	48.355	-3.1416					106	32	4	0	0	0	0.37135	1	2894	2894		54.776	3.2486	1	991970			47811	8904	39671	39692	51249	51249					0.052756288749378655
REEPLTPRL	9	Unmodified	_REEPLTPRL_					0	0	0		nc|ENSG00000165458|O15357-2|INPPL1;ENSG00000165458|ENST00000298229|INPPL1	nc|ENSG00000165458|O15357-2|INPPL1	nc|ENSG00000165458|O15357-2|INPPL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.269287109375	2	555.81693	1109.61931	-0.005949	-3.3066E-06	-0.38263	-0.00021267	-0.38858	-0.00021598	555.8164747579501	63.714	0.52039	63.714	63.414	63.935	0					27	12	3	0	0	0	0.027418	1	5744	5744		75.043	27.084	1	704700			47812	6562	39672	39693	51250	51250					0.06888219254597061
REEQDLERL	9	Unmodified	_REEQDLERL_					0	0	0		ENST00000494399.5_1_1:45478966-45479784:+|nuORF;ENSG00000126088|ENST00000246337|UROD;ENST00000460906.5_1_1:45478985-45479553:+|nuORF;ENST00000496439.1_1_1:45478597-45479553:+|nuORF	ENST00000494399.5_1_1:45478966-45479784:+|nuORF	ENST00000494399.5_1_1:45478966-45479784:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	594.3067016601562	2	594.304384	1186.59421	-0.25436	-0.00015116	0.2351	0.00013972	-0.019258	-1.1445E-05	594.3044277731279	54.156	0.5733	54.156	53.891	54.464	0					27	13	3	0	0	0	0.20111	1	4357	4357		76.17	10.704	1	887260			47813	3765	39673	39694	51251	51251					0.008381196613981956
REEQFRQP	8	Unmodified	_REEQFRQP_					0	0	0			REV__ENST00000538790.1_1_12:122505978-122506339:+|nuORF	REV__ENST00000538790.1_1_12:122505978-122506339:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.8043823242188	2	545.275429	1088.53631	-0.43918	-0.00023948	-1.4506	-0.00079096	-1.8898	-0.0010304	545.2745171003851	54.15	0.57568	54.15	53.929	54.505	0					27	13	3	0	0	0	0.028476	1	4399	4399		35.618	0	1	899660	+		47814	27328	39674	39695	51252	51252					-0.004420974733875482
REERAARLAD	10	Unmodified	_REERAARLAD_					0	0	0			REV__ENST00000582295.1_1_17:77020430-77020968:+|nuORF	REV__ENST00000582295.1_1_17:77020430-77020968:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	593.8182373046875	2	593.817993	1185.62143	-0.66307	-0.00039374	0.55643	0.00033042	-0.10664	-6.3326E-05	593.8183027192736	28.415	0.64836	28.415	28.19	28.838	0					31	12	4	0	0	0	0.47131	1	923	923		58.246	0.016323	1	790240	+		47815	24613	39675	39696	51253	51253					0.03604647992438004
REERAARLAD	10	Unmodified	_REERAARLAD_					0	0	0			REV__ENST00000582295.1_1_17:77020430-77020968:+|nuORF	REV__ENST00000582295.1_1_17:77020430-77020968:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	593.817993	1185.62143	-0.66307	-0.00039374	0.55643	0.00033042	-0.10664	-6.3326E-05	593.8183027192736	28.415	0.64836	28.415	28.19	28.838	0	0	0	NaN	58.246	31	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	790240	+		47816	24613	39675	39696							0.03604647992438004
REERERLEAE	10	Unmodified	_REERERLEAE_					0	0	0		ENSG00000109265|ENST00000682029|CRACD	ENSG00000109265|ENST00000682029|CRACD	ENSG00000109265|ENST00000682029|CRACD	MULTI-MSMS	OvCa99_classI_Rep5	1	439.556640625	3	439.556623	1315.64804	1.1337	0.00049831	-1.4237	-0.00062579	-0.29001	-0.00012748	439.5559747157809	31.003	0.62905	31.003	30.781	31.41	0					33	12	4	0	0	0	0.65826	1	1237	1237		35.178	2.1388	1	606350			47817	2705	39676	39697	51254	51254					0.002842920931016124
REERKIKQ	8	Unmodified	_REERKIKQ_					0	0	0			REV__PARP14|p.Q465R|1|0.09|ENSG00000173193|chr3:122699948-122699948|A/G|missense_variant	REV__PARP14|p.Q465R|1|0.09|ENSG00000173193|chr3:122699948-122699948|A/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.8043823242188	2	543.822547	1085.63054	-0.43067	-0.00023421	3.9583	0.0021526	3.5276	0.0019184	543.8246021895992	54.25	0.4569	54.25	54.048	54.505	0					20	10	3	0	0	0	0.028476	1	4399	4399		35.618	0	1	399250	+		47818	29277	39677	39698	51255	51255					0.09115041348741215
REESESVLTL	10	Unmodified	_REESESVLTL_					0	0	0		nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB;nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA;nc|ENSG00000138814|Q08209-4|PPP3CA	nc|ENSG00000107758|P16298-2|PPP3CB	nc|ENSG00000107758|P16298-2|PPP3CB	MSMS	OvCa99_classI_Rep5	1	581.8032836914062	2	581.801143	1161.58773	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.762	1	86.762	86.262	87.262	0								0	0	0	0.082999	1	9162	9162		77.318	0.54344	1				47819	2614	39678	39699	51256	51256					0.013401817100202607
REESNTKIDL	10	Unmodified	_REESNTKIDL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000460826.1_1_2:242186148-242187441:-|nuORF;ENST00000488923.1_1_2:242186148-242186740:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OvCa99_classI_Rep5	1	602.8145751953125	2	602.812042	1203.60953	-0.62336	-0.00037577	0.17061	0.00010284	-0.45275	-0.00027292	602.8121317672975	50.05	0.96068	50.05	49.679	50.64	0					65	21	4	0	0	0	0.073842	2	3785	3760;3785		120.31	16.249	1	11443000			47820	3119	39679	39700	51257;51258	51258					0.01586986458573847
REESPLRIK	9	Unmodified	_REESPLRIK_					0	0	0		nc|ENSG00000029363|Q9NYF8-4|BCLAF1;nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;ENST00000505813.1_1_5:110284728-110284920:-|nuORF	nc|ENSG00000029363|Q9NYF8-4|BCLAF1;ENST00000505813.1_1_5:110284728-110284920:-|nuORF	nc|ENSG00000029363|Q9NYF8-4|BCLAF1	MULTI-MSMS	OvCa99_classI_Rep5	1	564.3297729492188	2	564.330205	1126.64586	0.38491	0.00021722	-0.6858	-0.00038702	-0.30088	-0.0001698	564.3297165239959	45.018	1.0059	45.018	44.618	45.624	0					47	22	3	0	0	0	0.35694	1	3097	3097		56.434	0	1	1082500			47821	1062;12899	39680	39701	51259	51259					0.0875990814593024
REESQWIIP	9	Unmodified	_REESQWIIP_					0	0	0			REV__nc|ENSG00000130224|Q5VUJ6-2|LRCH2	REV__nc|ENSG00000130224|Q5VUJ6-2|LRCH2	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.8267211914062	2	579.301113	1156.58767	-0.21775	-0.00012614	-3.2777	-0.0018988	-3.4954	-0.0020249	579.2990982687297	52.835	0.65041	52.835	52.522	53.172	0					17	14	2	0	0	0	0.027462	1	4142	4142		45.972	8.1607	1	190910	+		47822	18931	39681	39702	51260	51260					0.01564226500681798
REETLLALGQL	11	Unmodified	_REETLLALGQL_					0	0	0			REV__tr|A0A7D6VQW7|A0A7D6VQW7_9CLOTRibose/galactose/methylgalactosideimportATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04875PE=3SV=1	REV__tr|A0A7D6VQW7|A0A7D6VQW7_9CLOTRibose/galactose/methylgalactosideimportATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04875PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	621.8560180664062	2	621.856252	1241.69795	-0.53094	-0.00033017	0.13593	8.4529E-05	-0.39501	-0.00024564	621.8562878187912	70.339	1.2237	67.768	67.412	68.635	-2.5707					81	23	5	0	0	0	0.17873	1	5615	5615		75.043	6.1972	1	789100	+		47823	31365	39682	39703	51261	51261					0.08677026769032636
REETSRNML	9	Unmodified	_REETSRNML_					0	0	0		nc|ENSG00000117152|P49798-5|RGS4;nc|ENSG00000117152|P49798-2|RGS4;ENSG00000117152|ENST00000367909|RGS4;nc|ENSG00000117152|P49798-3|RGS4;ENST00000491263.1_1_1:163043981-163044347:+|nuORF	nc|ENSG00000117152|P49798-5|RGS4	nc|ENSG00000117152|P49798-5|RGS4	MULTI-MSMS	OvCa99_classI_Rep5	1	568.2797241210938	2	568.279854	1134.54516	-0.41572	-0.00023625	0.20709	0.00011769	-0.20863	-0.00011856	568.2798371840444	38.234	0.55192	38.234	38.024	38.576	0					31	11	4	0	0	0	0.13326	1	2161	2161		88.177	13.134	1	532840			47824	3240	39683	39704	51262	51262					-0.016734918992369785
REEVSVEKL	9	Unmodified	_REEVSVEKL_					0	0	0			REV__nc|ENSG00000214595|Q6ZMW3-2|EML6	REV__nc|ENSG00000214595|Q6ZMW3-2|EML6	MULTI-MSMS	OvCa99_classI_Rep5	1	544.8043823242188	2	544.800946	1087.58734	-0.47229	-0.00025731	4.1864	0.0022807	3.7141	0.0020234	544.8029727828776	54.352	0.5855	54.352	54.089	54.675	0					37	13	3	0	0	0	0.26076	1	4399	4399		67.494	5.3863	1	5755600	+		47825	29130	39684	39705	51263	51263					0.04704806780819126
REFADLTRV	9	Unmodified	_REFADLTRV_					0	0	0		nc|ENSG00000291154|O95744|PMS2P2	nc|ENSG00000291154|O95744|PMS2P2	nc|ENSG00000291154|O95744|PMS2P2	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.801513671875	2	553.80128	1105.58801	0.49336	0.00027322	-1.3777	-0.00076298	-0.88435	-0.00048976	553.8005670666216	60.304	2.535	56.874	56.504	59.039	-3.43					130	51	5	0	0	0	0.3076	1	4151	4151		62.107	4.2961	1	5110100			47826	15401	39685	39706	51264	51264					0.03943646220500341
REFIAPVTL	9	Unmodified	_REFIAPVTL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3055419921875	2	523.305667	1044.59678	0.3552	0.00018588	-1.1012	-0.00057627	-0.74601	-0.00039039	523.3049818602126	107.67	1.863	107.37	107.07	108.93	-0.30836					109	37	6	0	0	0	0.3249	1	10066	10066		60.118	5.3419	1	586410			47827	5651	39686	39707	51265	51265					0.0762661985700106
REFIAPVTL	9	Unmodified	_REFIAPVTL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.3063354492188	2	523.305667	1044.59678	-0.97551	-0.00051049	0.61481	0.00032173	-0.3607	-0.00018876	523.3058336734236	109.12	1.9233	107.4	107.13	109.05	-1.7256					82	36	4	0	0	0	0.22621	1	10034	10034		71.877	5.4482	1	878890			47828	5651	39686	39707	51266	51266					0.0762661985700106
REFPTHRSVL	10	Unmodified	_REFPTHRSVL_					0	0	0		ENSG00000178951|ENST00000322357|ZBTB7A	ENSG00000178951|ENST00000322357|ZBTB7A	ENSG00000178951|ENST00000322357|ZBTB7A	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.2110290527344	3	414.563161	1240.66765	0.42744	0.0001772	-0.75248	-0.00031195	-0.32504	-0.00013475	414.56274683665936	49.028	0.8743	49.028	48.544	49.418	0					39	19	3	0	0	0	0.026795	1	3629	3629		61.765	10.973	1	802010			47829	7786	39687	39708	51267	51267					0.05694712894501208
REFTESQL	8	Unmodified	_REFTESQL_					0	0	0		ENSG00000149591|ENST00000392951|TAGLN	ENSG00000149591|ENST00000392951|TAGLN	ENSG00000149591|ENST00000392951|TAGLN	MULTI-MSMS	OvCa99_classI_Rep5	1	505.2508544921875	2	505.251089	1008.48762	0.1449	7.3209E-05	0.15708	7.9365E-05	0.30198	0.00015257	505.2511218296252	62.91	0.67547	62.91	62.661	63.337	0					37	16	3	0	0	0	0.27103	1	5621	5621		112.41	13.036	1	3158500			47830	5478	39688	39709	51268	51268					-0.016280108331443444
REGDLLFTV	9	Unmodified	_REGDLLFTV_					0	0	0		ENST00000474371.1_1_1:32688150-32694122:+|nuORF;ENST00000489353.5_1_1:32688042-32691823:+|nuORF;ENSG00000084623|ENST00000677711|EIF3I;ENST00000483517.5_1_1:32688126-32691885:+|nuORF	ENST00000474371.1_1_1:32688150-32694122:+|nuORF	ENST00000474371.1_1_1:32688150-32694122:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	525.2841796875	2	525.284931	1048.55531	0.26976	0.0001417	-0.89426	-0.00046974	-0.6245	-0.00032804	525.2844511785617	113.7	2.1235	113.58	113.02	115.14	-0.11777					119	42	4	0	0	0	0.22621	4	10823	10797;10816;10823;10831		71.877	6.5217	1	925990			47831	1716	39689	39710	51269;51270;51271;51272	51271					0.03297439097673305
REGDLLFTV	9	Unmodified	_REGDLLFTV_					0	0	0		ENST00000474371.1_1_1:32688150-32694122:+|nuORF;ENST00000489353.5_1_1:32688042-32691823:+|nuORF;ENSG00000084623|ENST00000677711|EIF3I;ENST00000483517.5_1_1:32688126-32691885:+|nuORF	ENST00000474371.1_1_1:32688150-32694122:+|nuORF	ENST00000474371.1_1_1:32688150-32694122:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	525.2838745117188	2	525.284931	1048.55531	-0.52192	-0.00027415	-0.086001	-4.5175E-05	-0.60792	-0.00031933	525.2848982861796	114.53	2.2405	113.48	112.84	115.08	-1.055					123	44	4	0	0	0	0.1944	5	8464	8464;8470;8476;8482;8496		77.318	22.541	1	908300			47832	1716	39689	39710	51273;51274;51275;51276;51277	51273					0.03297439097673305
REGDLLFTV	9	Unmodified	_REGDLLFTV_					0	0	0		ENST00000474371.1_1_1:32688150-32694122:+|nuORF;ENST00000489353.5_1_1:32688042-32691823:+|nuORF;ENSG00000084623|ENST00000677711|EIF3I;ENST00000483517.5_1_1:32688126-32691885:+|nuORF	ENST00000474371.1_1_1:32688150-32694122:+|nuORF	ENST00000474371.1_1_1:32688150-32694122:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.284423828125	2	525.284931	1048.55531	-0.11003	-5.7795E-05	-0.50009	-0.00026269	-0.61012	-0.00032049	525.2846666449118	114.93	1.879	113.53	112.83	114.71	-1.3977					101	36	4	0	0	0	0.1149	4	10706	10671;10682;10706;10718		93.143	23.969	1	1115000			47833	1716	39689	39710	51278;51279;51280;51281	51280					0.03297439097673305
REGEKLIRL	9	Unmodified	_REGEKLIRL_					0	0	0		ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	OvCa99_classI_Rep5	1	557.3418579101562	2	557.340572	1112.66659	-0.13637	-7.6003E-05	-0.37926	-0.00021138	-0.51563	-0.00028738	557.340163299739	53.819	0.64995	53.819	53.564	54.214	0					43	15	5	0	0	0	0.10421	1	4301	4301		96.034	13.283	1	2586300			47834	5904	39690	39711	51282	51282					0.114764985255988
REGKLEHTL	9	Unmodified	_REGKLEHTL_					0	0	0		nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-2|ATP2C1	nc|ENSG00000017260|P98194-3|ATP2C1	nc|ENSG00000017260|P98194-3|ATP2C1	MULTI-MSMS	OvCa99_classI_Rep5	1	541.800537109375	2	541.80128	1081.58801	-1.0068	-0.00054546	0.40029	0.00021688	-0.60647	-0.00032859	541.8013763999285	34.281	0.8457	34.281	34.065	34.911	0					32	17	2	0	0	0	0.049969	1	1642	1642		118.74	44.488	1	891920			47835	14865	39691	39712	51283	51283					0.050476462205324424
REGLGEYVQV	10	Unmodified	_REGLGEYVQV_					0	0	0			REV__ENST00000590278.1_1_19:33696051-33698478:+|nuORF	REV__ENST00000590278.1_1_19:33696051-33698478:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	575.2977294921875	2	575.29857	1148.58259	-0.84795	-0.00048782	0.245	0.00014095	-0.60294	-0.00034687	575.2986924624174	97.666	0.7856	96.707	96.365	97.15	-0.95856					51	15	4	0	0	0	0.52162	1	8874	8874		51.528	7.1506	1	1043800	+		47836	18980	39692	39713	51284	51284					0.014239226380368564
REGLIVGFVH	10	Unmodified	_REGLIVGFVH_					0	0	0		nc|ENSG00000149823|Q9UID3-2|VPS51;ENSG00000149823|ENST00000279281|VPS51	nc|ENSG00000149823|Q9UID3-2|VPS51	nc|ENSG00000149823|Q9UID3-2|VPS51	MULTI-MSMS	OvCa9_classI_Rep3	3	563.8213500976562	2	563.822015	1125.62948	-1.0763	-0.00060683	0.60197	0.00033941	-0.4743	-0.00026742	563.8222320836983	77.244	3.4816	74.872	74.348	77.829	-2.3715					149	68	6	0	0	0	0.6349	1	4059	4059		37.812	5.061	1	1334000			47837	5489	39693	39714	51285	51285					0.0716882697984147
REGPSPSIIY	10	Unmodified	_REGPSPSIIY_					0	0	0			REV__nc|ENSG00000144445|A0AUZ9-2|KANSL1L	REV__nc|ENSG00000144445|A0AUZ9-2|KANSL1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.8169555664062	2	559.795663	1117.57677	1.8881	0.001057	2.4698	0.0013826	4.3579	0.0024395	559.7960728399474	133.01	0.37238	133.01	132.84	133.22	0					11	7	2	0	0	0	0.026606	1	15453	15453		52.937	23.787	1	337610	+		47838	28907	39694	39715	51286	51286					0.022688241263722375
REGQEDQGL	9	Unmodified	_REGQEDQGL_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF;nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3	nc|ENSG00000011304|P26599-1|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF;nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.2406616210938	2	516.241252	1030.46795	-1.1529	-0.00059518	0.14938	7.7117E-05	-1.0035	-0.00051806	516.2412602721881	36.55	1.457	36.55	36.211	37.668	0					66	31	4	0	0	0	0.024645	2	1943	1921;1943		141.52	6.7097	1	3436400			47839	962;14054;3351	39695	39716	51287;51288	51288					-0.046063868438977806
REGRPLPEGG	10	Unmodified	_REGRPLPEGG_					0	0	0		ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.2852783203125	2	534.283254	1066.55196	-1.2512	-0.00066849	2.5584	0.0013669	1.3072	0.0006984	534.2847652774342	143.71	1.0923	142.26	141.89	142.98	-1.4427					46	20	3	0	0	0	0.73063	1	14072	14072		27.047	0.3544	1	84175			47840	3706	39696	39717	51289	51289					0.021341890436588073
REGSYEAAKL	10	Unmodified	_REGSYEAAKL_					0	0	0		ENSG00000074181|ENST00000263388|NOTCH3	ENSG00000074181|ENST00000263388|NOTCH3	ENSG00000074181|ENST00000263388|NOTCH3	MULTI-MSMS	OvCa99_classI_Rep5	1	562.2929077148438	2	562.290745	1122.56694	0.30287	0.0001703	1.4092	0.00079235	1.712	0.00096266	562.2913485592935	71.38	0.80733	71.38	71.109	71.916	0					49	19	4	0	0	0	0.24425	1	6896	6896		87.696	0	1	2016100			47841	1507	39697	39718	51290	51290					0.010556361209864917
REHEEYLKL	9	Unmodified	_REHEEYLKL_					0	0	0		nc|ENSG00000198171|Q96HY6-2|DDRGK1;ENSG00000198171|ENST00000354488|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	MULTI-MSMS	OvCa99_classI_Rep5	1	406.216552734375	3	406.215539	1215.62479	0.76744	0.00031175	-0.65837	-0.00026744	0.10907	4.4306E-05	406.2152517856088	55.044	1.17	55.044	54.718	55.888	0					62	27	4	0	0	0	0.016794	2	4486	4464;4486		150.81	57.213	1	6910200			47842	15255	39698	39719	51291;51292	51292					0.025598980464110355
REHEEYLKL	9	Unmodified	_REHEEYLKL_					0	0	0		nc|ENSG00000198171|Q96HY6-2|DDRGK1;ENSG00000198171|ENST00000354488|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	MULTI-MSMS	OvCa99_classI_Rep5	1	608.8206176757812	2	608.81967	1215.62479	-0.2716	-0.00016536	0.0030623	1.8644E-06	-0.26854	-0.00016349	608.8195643694504	55.039	0.59652	55.039	54.805	55.401	0					28	13	3	0	0	0	0.15056	1	4482	4482		78.264	13.107	1	2044000			47843	15255	39698	39719	51293	51293					0.025598980464110355
REHEEYLKL	9	Unmodified	_REHEEYLKL_					0	0	0		nc|ENSG00000198171|Q96HY6-2|DDRGK1;ENSG00000198171|ENST00000354488|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	MULTI-MSMS	OvCa9_classI_Rep2	2	406.21575927734375	3	406.215539	1215.62479	0.16081	6.5322E-05	-0.59525	-0.0002418	-0.43444	-0.00017648	406.21520183868466	61.041	1.5025	58.27	57.871	59.374	-2.7702					78	28	5	0	0	0	0.29613	1	4525	4525		63.426	12.635	1	403970			47844	15255	39698	39719	51294	51294					0.025598980464110355
REHEEYLKL	9	Unmodified	_REHEEYLKL_					0	0	0		nc|ENSG00000198171|Q96HY6-2|DDRGK1;ENSG00000198171|ENST00000354488|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	406.215539	1215.62479	1.3541	0.00055007	-1.7595	-0.00071473	-0.40533	-0.00016465	406.21471554565903	62.018	1.1602	58.561	58.29	59.45	-3.4577	0.14518	-0.000722	NaN	63.426	57	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	461790			47845	15255	39698	39719							0.025598980464110355
REHHDLQI	8	Unmodified	_REHHDLQI_					0	0	0			REV__nc|ENSG00000170962|Q9GZP0-2|PDGFD	REV__nc|ENSG00000170962|Q9GZP0-2|PDGFD	MULTI-MSMS	OvCa9_classI_Rep3	3	524.2713623046875	2	524.270147	1046.52574	0.85689	0.00044924	1.2993	0.00068116	2.1561	0.0011304	524.2706948277186	120.46	3.5918	119.43	118.68	122.27	-1.0271					167	69	5	0	0	0	0.37357	1	9208	9208		93.195	2.4188	1	1392700	+		47846	21584	39699	39720	51295	51295					0.004339198721709181
REHIKVQQL	9	Unmodified	_REHIKVQQL_					0	0	0		ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.E1239Rfs*4|1|0.06|ENSG00000114867|chr3:184327639-184327639|G/-|frameshift_variant	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	575.8377685546875	2	575.838197	1149.66184	-1.0342	-0.00059551	0.91825	0.00052877	-0.11592	-6.6749E-05	575.8386475477765	41.978	0.64881	41.978	41.681	42.329	0					43	14	4	0	0	0	0.020196	1	2658	2658		146.79	56.416	1	1304200			47847	3048	39700	39721	51296	51296					0.09299614382848631
REHPHPFTT	9	Unmodified	_REHPHPFTT_					0	0	0		nc|ENSG00000142583|P22732-2|SLC2A5	nc|ENSG00000142583|P22732-2|SLC2A5	nc|ENSG00000142583|P22732-2|SLC2A5	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.2803955078125	2	561.277972	1120.54139	0.10313	5.7884E-05	3.155	0.0017709	3.2582	0.0018287	561.2796104716807	43.73	1.4679	40.722	40.431	41.899	-3.0074					72	28	4	0	0	0	0.50149	1	2135	2135		42.396	4.5846	1	527260			47848	15070	39701	39722	51297	51297					-0.014057936107747082
REHPHPFTT	9	Unmodified	_REHPHPFTT_					0	0	0		nc|ENSG00000142583|P22732-2|SLC2A5	nc|ENSG00000142583|P22732-2|SLC2A5	nc|ENSG00000142583|P22732-2|SLC2A5	MULTI-MATCH	OvCa99_classI_Rep5	1		2	561.277972	1120.54139	0.33168	0.00018616	-2.5964	-0.0014573	-2.2647	-0.0012711	561.2767298464485	40.792	0.1707	40.792	40.711	40.881	0	0.0085803	-0.0059948	NaN	42.396	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18235			47849	15070	39701	39722							-0.014057936107747082
REHPHPFTT	9	Unmodified	_REHPHPFTT_					0	0	0		nc|ENSG00000142583|P22732-2|SLC2A5	nc|ENSG00000142583|P22732-2|SLC2A5	nc|ENSG00000142583|P22732-2|SLC2A5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	561.277972	1120.54139	0.93274	0.00052352	2.1892	0.0012288	3.1219	0.0017523	561.2790414891454	43.545	1.1906	40.835	40.312	41.502	-2.7097	0.052156	-0.00062268	NaN	42.396	49	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108490			47850	15070	39701	39722							-0.014057936107747082
REHVEAIKIGL	11	Unmodified	_REHVEAIKIGL_					0	0	0		ZWINT|p.R175Gfs*21|1|0.05|ENSG00000122952|chr10:56358905-56358905|T/-|frameshift_variant;nc|ENSG00000122952|O95229-2|ZWINT;ENSG00000122952|ENST00000373944|ZWINT	ZWINT|p.R175Gfs*21|1|0.05|ENSG00000122952|chr10:56358905-56358905|T/-|frameshift_variant	ZWINT|p.R175Gfs*21|1|0.05|ENSG00000122952|chr10:56358905-56358905|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	422.25042724609375	3	422.250583	1263.72992	0.045711	1.9302E-05	0.62011	0.00026184	0.66582	0.00028114	422.25077755465327	71.296	0.6378	71.296	71.031	71.668	0					45	15	4	0	0	0	0.54737	1	6902	6902		44.829	14.689	1	2432500			47851	3565	39702	39723	51298	51298					0.10860439242833309
REIAEAYETL	10	Unmodified	_REIAEAYETL_					0	0	0		ENSG00000128590|ENST00000249356|DNAJB9	ENSG00000128590|ENST00000249356|DNAJB9	ENSG00000128590|ENST00000249356|DNAJB9	MULTI-MSMS	OvCa99_classI_Rep5	1	597.8049926757812	2	597.803685	1193.59282	2.2847	0.0013658	-0.11731	-7.0126E-05	2.1674	0.0012957	597.8035095376144	82.788	0.98003	82.788	82.181	83.161	0					55	22	4	0	0	0	0.30325	1	8579	8579		80.455	5.4113	1	2837200			47852	3889	39703	39724	51299	51299					0.003764855726103633
REIAQDFKTDL	11	Unmodified	_REIAQDFKTDL_					0	0	0		ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000197409|ENST00000356476|H3C4;ENSG00000274750|ENST00000614911|H3C6;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000168148|ENST00000366696|H3-4;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000203811|ENST00000369158|H3C14;ENST00000593254.1_1_17:73774678-73775846:-|nuORF	ENST00000586518.1_1_17:73774674-73775034:-|nuORF	ENST00000586518.1_1_17:73774674-73775034:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	445.90313720703125	3	445.90162	1334.68303	2.8327	0.0012631	-0.68452	-0.00030523	2.1482	0.00095789	445.9013116078811	76.702	1.0962	76.702	76.405	77.501	0					65	26	4	0	0	0	0.12805	2	7721	7692;7721		91.123	27.429	1	9973800			47853	14046	39704	39725	51300;51301	51301					0.02907534901055442
REIAQDFKTDL	11	Unmodified	_REIAQDFKTDL_					0	0	0		ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000197409|ENST00000356476|H3C4;ENSG00000274750|ENST00000614911|H3C6;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000168148|ENST00000366696|H3-4;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000203811|ENST00000369158|H3C14;ENST00000593254.1_1_17:73774678-73775846:-|nuORF	ENST00000586518.1_1_17:73774674-73775034:-|nuORF	ENST00000586518.1_1_17:73774674-73775034:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	445.9021911621094	3	445.90162	1334.68303	0.48603	0.00021672	-0.7398	-0.00032988	-0.25378	-0.00011316	445.9012225799955	79.671	1.6749	77.331	76.902	78.577	-2.3399					103	32	5	0	0	0	0.25724	1	4317	4317		72.289	17.205	1	453550			47854	14046	39704	39725	51302	51302					0.02907534901055442
REIAQDFKTDL	11	Unmodified	_REIAQDFKTDL_					0	0	0		ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000197409|ENST00000356476|H3C4;ENSG00000274750|ENST00000614911|H3C6;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000168148|ENST00000366696|H3-4;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000203811|ENST00000369158|H3C14;ENST00000593254.1_1_17:73774678-73775846:-|nuORF	ENST00000586518.1_1_17:73774674-73775034:-|nuORF	ENST00000586518.1_1_17:73774674-73775034:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	445.90162	1334.68303	2.2401	0.00099888	-2.4568	-0.0010955	-0.21667	-9.6615E-05	445.9004917204409	78.931	1.5197	77.191	76.855	78.375	-1.7398	-0.001623	-0.0016225	NaN	72.289	87	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	411140			47855	14046	39704	39725							0.02907534901055442
REIAQDFKTDL	11	Unmodified	_REIAQDFKTDL_					0	0	0		ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000197409|ENST00000356476|H3C4;ENSG00000274750|ENST00000614911|H3C6;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000168148|ENST00000366696|H3-4;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000203811|ENST00000369158|H3C14;ENST00000593254.1_1_17:73774678-73775846:-|nuORF	ENST00000586518.1_1_17:73774674-73775034:-|nuORF	ENST00000586518.1_1_17:73774674-73775034:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	445.90162	1334.68303	-0.34597	-0.00015427	-0.12295	-5.4824E-05	-0.46892	-0.00020909	445.90152041570815	79.808	1.3125	77.057	76.797	78.109	-2.7514	-0.13606	0.0014995	NaN	72.289	74	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	627690			47856	14046	39704	39725							0.02907534901055442
REIEEKLHKL	10	Unmodified	_REIEEKLHKL_					0	0	0		ENSG00000170502|ENST00000302174|NUDT9;nc|ENSG00000170502|Q9BW91-2|NUDT9	ENSG00000170502|ENST00000302174|NUDT9	ENSG00000170502|ENST00000302174|NUDT9	MULTI-MSMS	OvCa99_classI_Rep5	1	432.254638671875	3	432.254105	1293.74048	-0.45698	-0.00019753	0.11444	4.9467E-05	-0.34254	-0.00014806	432.2540416841216	41.961	0.56208	41.961	41.724	42.286	0					37	12	5	0	0	0	0.47898	1	2672	2672		57.149	13.498	1	798850			47857	7111	39705	39726	51303	51303					0.10536421897290893
REIEGRAIRL	10	Unmodified	_REIEGRAIRL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	OvCa99_classI_Rep5	1	606.8637084960938	2	606.862203	1211.70985	-0.15467	-9.3866E-05	0.14301	8.6788E-05	-0.011664	-7.0784E-06	606.8621728153709	54.11	0.61412	54.11	53.891	54.505	0					40	14	4	0	0	0	0.066656	1	4340	4340		80.455	10.827	1	3059800			47858	3058	39706	39727	51304	51304					0.11246688302890107
REIFRNEKL	9	Unmodified	_REIFRNEKL_					0	0	0		ENST00000481352.6_1_6:43488011-43488806:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C;ENST00000455605.2_1_6:43488611-43489035:+|nuORF	ENST00000481352.6_1_6:43488011-43488806:+|nuORF	ENST00000481352.6_1_6:43488011-43488806:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	402.2318420410156	3	402.231412	1203.67241	0.98282	0.00039532	-0.85442	-0.00034367	0.1284	5.1648E-05	402.23098030698014	48.546	0.7827	48.546	48.248	49.031	0					46	17	3	0	0	0	0.34132	1	3563	3563		58.23	8.6939	1	1333100			47859	7196	39707	39728	51305	51305					0.07871597037274114
REIGEATEHL	10	Unmodified	_REIGEATEHL_					0	0	0		LAMB2|p.A1715Sfs*4|1|0.69|ENSG00000172037|chr3:49121550-49121551|-/T|frameshift_variant;ENSG00000172037|ENST00000305544|LAMB2;ENST00000469665.1_1_3:49160507-49161165:-|nuORF;ENST00000477225.1_1_3:49160862-49161360:-|nuORF	LAMB2|p.A1715Sfs*4|1|0.69|ENSG00000172037|chr3:49121550-49121551|-/T|frameshift_variant	LAMB2|p.A1715Sfs*4|1|0.69|ENSG00000172037|chr3:49121550-49121551|-/T|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	577.7945556640625	2	577.793652	1153.57275	-0.42341	-0.00024464	0.092418	5.3399E-05	-0.33099	-0.00019124	577.7936969241608	51.187	1.3096	51.187	50.949	52.259	0					75	30	5	0	0	0	0.32141	2	3919	3919;3941		78.264	11.962	1	11089000			47860	7262	39708	39729	51306;51307	51306					0.0021073463267384795
REIKSSQGL	9	Unmodified	_REIKSSQGL_					0	0	0		ENSG00000100813|ENST00000605057|ACIN1;nc|ENSG00000100813|Q9UKV3-5|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1	ENSG00000100813|ENST00000605057|ACIN1	ENSG00000100813|ENST00000605057|ACIN1	MULTI-MSMS	OvCa99_classI_Rep5	1	509.28765869140625	2	509.288005	1016.56146	-1.0487	-0.00053408	0.83208	0.00042377	-0.21659	-0.00011031	509.2883674545032	34.464	0.61085	34.464	34.161	34.772	0					34	12	4	0	0	0	0.23241	1	1661	1661		70.816	12.034	1	827010			47861	2107	39709	39730	51308	51308					0.05383957329195255
REIMGTPEYL	10	Unmodified	_REIMGTPEYL_					0	0	0		ENSG00000081320|ENST00000263955|STK17B	ENSG00000081320|ENST00000263955|STK17B	ENSG00000081320|ENST00000263955|STK17B	MULTI-MSMS	OvCa99_classI_Rep5	1	604.804443359375	2	604.802631	1207.59071	2.1101	0.0012762	1.3584	0.00082155	3.4685	0.0020978	604.8026948636509	92.997	0.86971	92.997	92.721	93.59	0					61	20	5	0	0	0	0.30325	1	10067	10067		80.455	16.247	1	4454200			47862	1659	39710	39731	51309	51309					-0.0047826643683492875
REIMGTPEYL	10	Unmodified	_REIMGTPEYL_					0	0	0		ENSG00000081320|ENST00000263955|STK17B	ENSG00000081320|ENST00000263955|STK17B	ENSG00000081320|ENST00000263955|STK17B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	604.802631	1207.59071	-0.7471	-0.00045185	0.62818	0.00037992	-0.11892	-7.1925E-05	604.8028962135621	94.031	0.56999	92.932	92.644	93.214	-1.0995	-0.046085	0.00036103	NaN	80.455	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15800			47863	1659	39710	39731							-0.0047826643683492875
REIMGTPEYL	10	Unmodified	_REIMGTPEYL_					0	0	0		ENSG00000081320|ENST00000263955|STK17B	ENSG00000081320|ENST00000263955|STK17B	ENSG00000081320|ENST00000263955|STK17B	MULTI-MATCH	OvCa9_classI_Rep3	3		2	604.802631	1207.59071	1.2949	0.00078318	-1.7826	-0.0010781	-0.48769	-0.00029495	604.801569919129	94.867	0.64969	92.972	92.662	93.311	-1.8956	-0.0062426	-0.0025551	NaN	80.455	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13091			47864	1659	39710	39731							-0.0047826643683492875
REIMGTPEYL	10	Unmodified	_REIMGTPEYL_					0	0	0		ENSG00000081320|ENST00000263955|STK17B	ENSG00000081320|ENST00000263955|STK17B	ENSG00000081320|ENST00000263955|STK17B	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	604.802631	1207.59071	-0.6612	-0.0003999	-0.013949	-8.4361E-06	-0.67515	-0.00040833	604.8026506792878	95.48	0.60226	93.011	92.761	93.363	-2.4685	0.033305	-0.00041569	NaN	80.455	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13207			47865	1659	39710	39731							-0.0047826643683492875
REIPEGNEKAL	11	Unmodified	_REIPEGNEKAL_					0	0	0		ENSG00000143387|ENST00000271651|CTSK	ENSG00000143387|ENST00000271651|CTSK	ENSG00000143387|ENST00000271651|CTSK	MULTI-MSMS	OvCa99_classI_Rep5	1	628.3370361328125	2	628.335684	1254.65681	-0.72509	-0.0004556	0.57263	0.0003598	-0.15246	-9.5796E-05	628.3360701367338	49.792	0.6067	49.792	49.507	50.114	0					37	13	4	0	0	0	0.1228	1	3740	3740		92.239	40.711	1	1481900			47866	5048	39711	39732	51310	51310					0.03967265729556857
REIQDDMQTL	10	Unmodified	_REIQDDMQTL_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MSMS	OvCa99_classI_Rep5	1	624.800537109375	2	624.798077	1247.5816	1.9867	0.0012413	0.44231	0.00027635	2.429	0.0015176	624.7981769488381	76.799	0.77783	76.799	76.558	77.336	0					36	18	3	0	0	0	0.24997	1	7723	7723		86.882	18.035	1	2069700			47867	2189	39712	39733	51311	51311					-0.032286597931943106
REIQDDMQTL	10	Unmodified	_REIQDDMQTL_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	624.798077	1247.5816	0.75312	0.00047055	-0.62959	-0.00039336	0.12354	7.7187E-05	624.7976316446121	79.101	0.34169	76.762	76.61	76.952	-2.3399	-0.057128	-0.0013002	NaN	86.882	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22672			47868	2189	39712	39733							-0.032286597931943106
REIQDDMQTL	10	Unmodified	_REIQDDMQTL_					0	0	0		nc|ENSG00000101596|A6NHR9-2|SMCHD1;ENSG00000101596|ENST00000320876|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	nc|ENSG00000101596|A6NHR9-2|SMCHD1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	624.798077	1247.5816	-0.40733	-0.0002545	2.7797	0.0017368	2.3724	0.0014823	624.7979394701555	79.647	0.28544	76.896	76.797	77.082	-2.7514	0.076871	0.0029601	NaN	86.882	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19160			47869	2189	39712	39733							-0.032286597931943106
REIQTAVRL	9	Unmodified	_REIQTAVRL_					0	0	0		ENSG00000276410|ENST00000615966|H2BC3;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000146047|ENST00000274764|H2BC1;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;nc|ENSG00000203814|Q5QNW6-2|H2BC18	ENSG00000276410|ENST00000615966|H2BC3;ENSG00000278588|ENST00000377733|H2BC10	ENSG00000278588|ENST00000377733|H2BC10	MULTI-MSMS	OvCa99_classI_Rep5	1	543.3260498046875	2	543.324922	1084.63529	-0.63232	-0.00034355	-0.99364	-0.00053987	-1.626	-0.00088342	543.3244155370763	61.607	2.2024	61.607	61.332	63.534	0					121	53	5	0	0	0	0.13326	3	5452	5422;5452;5483		88.177	23.97	1	53350000			47870	3666;5948	39713	39734	51312;51313;51314	51313					0.09635925491488706
REIQTAVRL	9	Unmodified	_REIQTAVRL_					0	0	0		ENSG00000276410|ENST00000615966|H2BC3;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000146047|ENST00000274764|H2BC1;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;nc|ENSG00000203814|Q5QNW6-2|H2BC18	ENSG00000276410|ENST00000615966|H2BC3;ENSG00000278588|ENST00000377733|H2BC10	ENSG00000278588|ENST00000377733|H2BC10	MULTI-MSMS	OvCa9_classI_Rep2	2	543.32568359375	2	543.324922	1084.63529	0.054576	2.9652E-05	-0.27875	-0.00015145	-0.22418	-0.0001218	543.3247413975346	64.933	1.7204	62.208	61.917	63.637	-2.7245					94	33	5	0	0	0	0.061524	8	4978	4957;4960;4966;4972;4978;4984;4990;4996		112.11	29.867	1	1066900			47871	3666;5948	39713	39734	51315;51316;51317;51318;51319;51320;51321;51322	51319					0.09635925491488706
REIQTAVRL	9	Unmodified	_REIQTAVRL_					0	0	0		ENSG00000276410|ENST00000615966|H2BC3;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000146047|ENST00000274764|H2BC1;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;nc|ENSG00000203814|Q5QNW6-2|H2BC18	ENSG00000276410|ENST00000615966|H2BC3;ENSG00000278588|ENST00000377733|H2BC10	ENSG00000278588|ENST00000377733|H2BC10	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.3262939453125	2	543.324922	1084.63529	-1.3865	-0.0007533	0.98401	0.00053464	-0.40245	-0.00021866	543.3254372426837	65.77	1.8587	62.284	62.034	63.893	-3.4854					102	37	5	0	0	0	0.046778	4	4753	4743;4753;4766;4779		120.87	38.628	1	1845400			47872	3666;5948	39713	39734	51323;51324;51325;51326	51324					0.09635925491488706
REIQTAVRLL	10	Unmodified	_REIQTAVRLL_					0	0	0		ENSG00000276410|ENST00000615966|H2BC3;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000146047|ENST00000274764|H2BC1;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;nc|ENSG00000203814|Q5QNW6-2|H2BC18	ENSG00000276410|ENST00000615966|H2BC3;ENSG00000278588|ENST00000377733|H2BC10	ENSG00000278588|ENST00000377733|H2BC10	MSMS	OvCa99_classI_Rep5	1	599.8685302734375	2	599.866954	1197.71936	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.975	1	79.975	79.475	80.475	0								0	0	0	0.048411	1	8182	8182		106.88	48.098	1				47873	3666;5948	39714	39735	51327	51327					0.1284045658840114
REIQTAVRLL	10	Unmodified	_REIQTAVRLL_					0	0	0		ENSG00000276410|ENST00000615966|H2BC3;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000146047|ENST00000274764|H2BC1;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;nc|ENSG00000203814|Q5QNW6-2|H2BC18	ENSG00000276410|ENST00000615966|H2BC3;ENSG00000278588|ENST00000377733|H2BC10	ENSG00000278588|ENST00000377733|H2BC10	MULTI-MSMS	OvCa9_classI_Rep4_	4	599.868408203125	2	599.866954	1197.71936	1.3339	0.00080016	-1.5497	-0.00092963	-0.21584	-0.00012948	599.8659221386946	84.395	1.2811	81.732	81.412	82.693	-2.6629					68	26	3	0	0	0	0.17901	2	7066	7055;7066		96.034	43.097	1	507210			47874	3666;5948	39714	39735	51328;51329	51329					0.1284045658840114
REIRQLEQE	9	Unmodified	_REIRQLEQE_					0	0	0		nc|ENSG00000187778|Q96EZ8-3|MCRS1;ENSG00000187778|ENST00000343810|MCRS1;nc|ENSG00000187778|Q96EZ8-2|MCRS1;nc|ENSG00000187778|Q96EZ8-4|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	nc|ENSG00000187778|Q96EZ8-3|MCRS1	MULTI-MSMS	OvCa99_classI_Rep5	1	600.8202514648438	2	600.820201	1199.62585	0.10526	6.3244E-05	-0.42325	-0.0002543	-0.31799	-0.00019105	600.8199224951187	47.008	0.61647	47.008	46.762	47.379	0					25	13	2	0	0	0	0.23549	1	3350	3350		63.534	8.8115	1	2943100			47875	8433	39715	39736	51330	51330					0.03402112415301417
REIRRILEL	9	Unmodified	_REIRRILEL_					0	0	0		ENST00000206423.7_2_3:112359587-112359683:-|nuORF	ENST00000206423.7_2_3:112359587-112359683:-|nuORF	ENST00000206423.7_2_3:112359587-112359683:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	599.3765869140625	2	599.374946	1196.73534	-0.50806	-0.00030452	0.21227	0.00012723	-0.29579	-0.00017729	599.3750130838728	69.686	1.1324	69.686	69.433	70.565	0					65	27	4	0	0	0	0.22621	1	6631	6631		71.877	8.5712	1	5499500			47876	9656	39716	39737	51331	51331					0.14484162825351632
REIVAGYRPT	10	Unmodified	_REIVAGYRPT_					0	0	0			REV__tr|A0A7D7A391|A0A7D7A391_9CLOTTransposaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20770PE=4SV=1	REV__tr|A0A7D7A391|A0A7D7A391_9CLOTTransposaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20770PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	581.3229370117188	2	581.32238	1160.63021	-1.2046	-0.00070026	0.3144	0.00018277	-0.8902	-0.00051749	581.3220787116137	79.809	1.0192	77.057	76.75	77.769	-2.7514					53	20	4	0	0	0	0.33877	1	6502	6502		76.17	16.051	1	331930	+		47877	32574	39717	39738	51332	51332					0.05631621628890571
REIVRDIKEKL	11	Unmodified	_REIVRDIKEKL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ACTB|p.K238Rfs*46|1|0.21|ENSG00000075624|chr7:5528372-5528372|C/-|frameshift_variant;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OvCa99_classI_Rep5	1	466.9537353515625	3	466.952426	1397.83545	-0.36865	-0.00017214	-0.14878	-6.9471E-05	-0.51742	-0.00024161	466.95239081712504	55.406	1.3991	55.406	55.023	56.422	0					90	33	5	0	0	0	0.34309	1	4540	4540		65.278	8.6453	1	11130000			47878	1537;8634;5081	39718	39739	51333	51333					0.15244355368463403
REIVRDIKEKL	11	Unmodified	_REIVRDIKEKL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ACTB|p.K238Rfs*46|1|0.21|ENSG00000075624|chr7:5528372-5528372|C/-|frameshift_variant;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OvCa9_classI_Rep2	2	466.9524230957031	3	466.952426	1397.83545	-1.5135	-0.00070674	0.96613	0.00045114	-0.54739	-0.00025561	466.952858762852	61.658	1.9496	58.899	58.515	60.465	-2.7593					109	37	4	0	0	0	0.57194	1	4584	4584		47.228	2.2055	1	461980			47879	1537;8634;5081	39718	39739	51334	51334					0.15244355368463403
REIVRDIKEKL	11	Unmodified	_REIVRDIKEKL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ACTB|p.K238Rfs*46|1|0.21|ENSG00000075624|chr7:5528372-5528372|C/-|frameshift_variant;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000196834|ENST00000451531|POTEI;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OvCa9_classI_Rep3	3	466.9521179199219	3	466.952426	1397.83545	1.5916	0.00074322	-2.0144	-0.00094062	-0.42273	-0.00019739	466.9514863874782	62.714	2.1935	59.681	59.362	61.555	-3.0339					129	43	5	0	0	0	0.45478	3	2306	2273;2306;2324		57.149	7.1152	1	504980			47880	1537;8634;5081	39718	39739	51335;51336;51337	51336					0.15244355368463403
REKAARIIQL	10	Unmodified	_REKAARIIQL_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OvCa9_classI_Rep2	2	599.3743286132812	2	599.374946	1196.73534	1.9382	0.0011617	-1.488	-0.00089189	0.45018	0.00026983	599.3740428805531	27.454	0.3009	24.744	24.61	24.911	-2.7097					9	6	2	0	0	0	0.84374	1	480	480		13.454	1.2474	1	15163			47881	1348	39719	39740	51338	51338					0.14484162825328895
REKDDANFKL	10	Unmodified	_REKDDANFKL_					0	0	0		ENSG00000155827|ENST00000389120|RNF20;ENSG00000103549|ENST00000324685|RNF40;nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;nc|ENSG00000103549|O75150-4|RNF40	ENSG00000155827|ENST00000389120|RNF20;ENSG00000103549|ENST00000324685|RNF40	ENSG00000103549|ENST00000324685|RNF40	MULTI-MSMS	OvCa99_classI_Rep5	1	412.5510559082031	3	412.55081	1234.6306	0.80049	0.00033024	-0.79219	-0.00032682	0.0082965	3.4227E-06	412.5504572483845	47.058	1.1357	47.058	46.676	47.812	0					68	25	4	0	0	0	0.33877	2	3354	3354;3376		79.07	8.6715	1	4081900			47882	2330;5803	39720	39741	51339;51340	51339					0.02266996558091705
REKDLEVYL	9	Unmodified	_REKDLEVYL_					0	0	0		NISCH|p.L754Sfs*219|1|0.14|ENSG00000010322|chr3:52487751-52487751|C/-|frameshift_variant;nc|ENSG00000010322|Q9Y2I1-4|NISCH;nc|ENSG00000010322|Q9Y2I1-3|NISCH;ENSG00000010322|ENST00000345716|NISCH	NISCH|p.L754Sfs*219|1|0.14|ENSG00000010322|chr3:52487751-52487751|C/-|frameshift_variant;ENSG00000010322|ENST00000345716|NISCH	NISCH|p.L754Sfs*219|1|0.14|ENSG00000010322|chr3:52487751-52487751|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	582.818603515625	2	582.816596	1163.61864	1.3947	0.00081286	1.745	0.001017	3.1397	0.0018299	582.8168958660585	78.751	1.1686	78.751	78.457	79.625	0					74	28	5	0	0	0	0.38969	1	7984	7984		52.937	6.9645	1	7233200			47883	15431;944	39721	39742	51341	51341					0.043373798149104914
REKDQRKIPI	10	Unmodified	_REKDQRKIPI_					0	0	0		nc|ENSG00000002745|Q9UBV4-2|WNT16;ENSG00000002745|ENST00000222462|WNT16	nc|ENSG00000002745|Q9UBV4-2|WNT16	nc|ENSG00000002745|Q9UBV4-2|WNT16	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8823852539062	2	641.883136	1281.75172	-5.3554	-0.0034376	4.4876	0.0028805	-0.86781	-0.00055703	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.72319	1	12989	12989		27.882	0.83493	1	804890			47884	812	39722	39743	51342	51342					0.12211243991418996
REKDTVKKL	9	Unmodified	_REKDTVKKL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	OvCa9_classI_Rep2	2	558.84033203125	2	558.840405	1115.66626	1.1066	0.00061842	-1.3696	-0.00076538	-0.26298	-0.00014697	558.8394771772328	30.588	0.88633	27.878	27.706	28.592	-2.7097					39	17	3	0	0	0	0.57283	1	863	863		35.152	0	1	114560			47885	3744	39723	39744	51343	51343					0.1130507880575351
REKEAAYQERL	11	Unmodified	_REKEAAYQERL_					0	0	0		ENST00000532683.5_1_14:73569902-73577964:+|nuORF;ENSG00000119707|ENST00000261973|RBM25	ENST00000532683.5_1_14:73569902-73577964:+|nuORF	ENST00000532683.5_1_14:73569902-73577964:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	464.9123840332031	3	464.912519	1391.71573	-0.40097	-0.00018642	0.35176	0.00016354	-0.049208	-2.2878E-05	464.91256815771897	38.641	0.53279	38.641	38.394	38.927	0					31	11	4	0	0	0	0.59827	1	2215	2215		44.829	13.76	1	467150			47886	3388	39724	39745	51344	51344					0.03553742023882478
REKEEWFRRFI	11	Unmodified	_REKEEWFRRFI_					0	0	0		ENSG00000136478|ENST00000584379|TEX2;nc|ENSG00000136478|Q8IWB9-2|TEX2	ENSG00000136478|ENST00000584379|TEX2	ENSG00000136478|ENST00000584379|TEX2	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.3095092773438	3	532.619558	1594.83684	0.088328	4.7045E-05	3.697	0.0019691	3.7853	0.0020161	532.621509529834	32.528	0.34488	32.528	32.403	32.748	0					9	6	2	0	0	0	0.026461	1	1430	1430		8.7993	3.3864	1	47112			47887	4490	39725	39746	51345	51345					0.06321989457205746
REKEIQVLTK	10	Unmodified	_REKEIQVLTK_					0	0	0			REV__tr|A0A7D6ZUN7|A0A7D6ZUN7_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12665PE=4SV=1	REV__tr|A0A7D6ZUN7|A0A7D6ZUN7_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12665PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.8777770996094	3	415.250472	1242.72959	0.55279	0.00022954	-0.80404	-0.00033388	-0.25126	-0.00010434	415.2500614528696	30.341	0.39646	30.341	30.086	30.483	0					16	7	3	0	0	0	0.026856	1	1139	1139		48.602	6.2635	1	28879	+		47888	32225	39726	39747	51346	51346					0.11793019522974646
REKEKEKEL	9	Unmodified	_REKEKEKEL_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	OvCa99_classI_Rep5	1	594.8329467773438	2	594.832777	1187.651	-0.026173	-1.5568E-05	0.034801	2.0701E-05	0.008628	5.1322E-06	594.8326923853493	22.662	0.41283	22.662	22.481	22.894	0					24	9	4	0	0	0	0.29519	1	239	239		63.534	5.3039	1	282020			47889	2719	39727	39748	51347	51347					0.06468167217894916
REKEKTAL	8	Unmodified	_REKEKTAL_					0	0	0		ENST00000494624.1_1_X:100872426-100872564:-|nuORF;ENST00000361910.8_1_X:100871678-100872564:-|nuORF;ENST00000539247.5_1_X:100872276-100872564:-|nuORF	ENST00000494624.1_1_X:100872426-100872564:-|nuORF	ENST00000494624.1_1_X:100872426-100872564:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	487.78424072265625	2	487.785099	973.555644	-1.0595	-0.00051683	-0.021038	-1.0262E-05	-1.0806	-0.00052709	487.78496177559055	36.596	0.71702	36.596	36.397	37.114	0					31	15	4	0	0	0	0.26545	1	1944	1944		113.41	8.665	1	1125900			47890	10809	39728	39749	51348	51348					0.06780858817501212
REKELESIK	9	Unmodified	_REKELESIK_					0	0	0		nc|ENSG00000161791|Q8IVF7-2|FMNL3;ENSG00000161791|ENST00000335154|FMNL3;nc|ENSG00000161791|Q8IVF7|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	nc|ENSG00000161791|Q8IVF7-2|FMNL3	MULTI-MSMS	OvCa99_classI_Rep5	1	566.321533203125	2	566.322045	1130.62954	-0.51501	-0.00029166	0.029528	1.6722E-05	-0.48549	-0.00027494	566.3220715761462	33.994	0.76269	33.994	33.776	34.539	0					45	15	4	0	0	0	0.11022	1	1601	1601		94.409	1.2659	1	2080200			47891	6138	39729	39750	51349	51349					0.06944782189157195
REKEQFRKL	9	Unmodified	_REKEQFRKL_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	OvCa9_classI_Rep4_	4	411.90728759765625	3	411.906928	1232.69895	1.5777	0.00064987	-1.3749	-0.00056633	0.20282	8.3545E-05	411.9062834492241	36.725	1.3455	33.832	33.546	34.891	-2.8925					71	26	4	0	0	0	0.45842	1	1293	1293		46.457	0	1	189330			47892	3541	39730	39751	51350	51350					0.09191285928613979
REKEQFRKL	9	Unmodified	_REKEQFRKL_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	411.906928	1232.69895	-1.7387	-0.00071617	2.0605	0.00084875	0.32186	0.00013258	411.90770215298403	36.751	1.1824	34.041	33.795	34.977	-2.7097	0.1045	0.0034265	NaN	46.457	48	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80398			47893	3541	39730	39751							0.09191285928613979
REKETKALSL	10	Unmodified	_REKETKALSL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.A1773Sfs*19|1|0.04|ENSG00000100345|chr22:36285287-36285288|-/T|frameshift_variant;CHD2-MYH9|1|fusion;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133026|P35580|MYH10	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OvCa99_classI_Rep5	1	587.8421020507812	2	587.843145	1173.67174	-0.77735	-0.00045696	0.049572	2.914E-05	-0.72778	-0.00042782	587.843040051276	39.944	0.68076	39.944	39.798	40.479	0					29	14	3	0	0	0	0.39872	1	2392	2392		68.626	13.542	1	941010			47894	2050;15021;4218	39731	39752	51351	51351					0.09184757597586213
REKETKALSL	10	Unmodified	_REKETKALSL_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.A1773Sfs*19|1|0.04|ENSG00000100345|chr22:36285287-36285288|-/T|frameshift_variant;CHD2-MYH9|1|fusion;nc|ENSG00000100345|P35579-2|MYH9;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11;nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	ENSG00000100345|ENST00000216181|MYH9;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133026|P35580|MYH10	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OvCa9_classI_Rep4_	4	587.8438110351562	2	587.843145	1173.67174	-0.43601	-0.00025631	0.04718	2.7734E-05	-0.38883	-0.00022857	587.8433663652381	47.032	1.4184	43.959	43.655	45.074	-3.0724					72	27	4	0	0	0	0.45788	1	2507	2507		60.167	14.259	1	478230			47895	2050;15021;4218	39731	39752	51352	51352					0.09184757597586213
REKEVPEML	9	Unmodified	_REKEVPEML_					0	0	0			REV__nc|ENSG00000136270|Q969Z0-2|TBRG4	REV__nc|ENSG00000136270|Q969Z0-2|TBRG4	MULTI-MSMS	OvCa99_classI_Rep5	1	565.7998046875	2	565.797349	1129.58014	0.34774	0.00019675	2.426	0.0013726	2.7738	0.0015694	565.7987603591899	31.981	0.79515	31.981	31.757	32.553	0					36	15	3	0	0	0	0.070405	1	1360	1360		107.01	2.9939	1	1605000	+		47896	19373	39732	39753	51353	51353					0.020537509087489525
REKEVPEML	9	Unmodified	_REKEVPEML_					0	0	0			REV__nc|ENSG00000136270|Q969Z0-2|TBRG4	REV__nc|ENSG00000136270|Q969Z0-2|TBRG4	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	565.797349	1129.58014	0.34774	0.00019675	2.426	0.0013726	2.7738	0.0015694	565.7987603591899	31.981	0.79515	31.981	31.757	32.553	0	0	0	NaN	107.01	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1605000	+		47897	19373	39732	39753							0.020537509087489525
REKHEILKF	9	Unmodified	_REKHEILKF_					0	0	0		tr|A0A7D6VWK5|A0A7D6VWK5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04500PE=4SV=1	tr|A0A7D6VWK5|A0A7D6VWK5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04500PE=4SV=1	tr|A0A7D6VWK5|A0A7D6VWK5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04500PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	400.5680236816406	3	400.568024	1198.68224	1.6995	0.00068077	-4.2273	-0.0016933	-2.5278	-0.0010126	400.5662408903371	67.299	1.6349	67.299	67.014	68.649	0					93	40	4	0	0	0	0.34132	1	6272	6272		58.23	10.27	1	8704000			47898	35252	39733	39754	51354	51354					0.09084785042637122
REKIDQERL	9	Unmodified	_REKIDQERL_					0	0	0		ENSG00000105321|ENST00000221922|CCDC9;chr19:47272161-47273357|427|26.67|0.0|21.35|+|ENST00000643617|CCDC9,CCDC9	ENSG00000105321|ENST00000221922|CCDC9	ENSG00000105321|ENST00000221922|CCDC9	MULTI-MSMS	OvCa99_classI_Rep5	1	593.8301391601562	2	593.830569	1185.64658	-0.88747	-0.00052701	0.08563	5.0849E-05	-0.80184	-0.00047616	593.8304738501174	36.824	0.67163	36.824	36.487	37.159	0					30	14	4	0	0	0	0.014622	1	1976	1976		154.12	33.25	1	413210			47899	418	39734	39755	51355	51355					0.061187027950154516
REKIDQERL	9	Unmodified	_REKIDQERL_					0	0	0		ENSG00000105321|ENST00000221922|CCDC9;chr19:47272161-47273357|427|26.67|0.0|21.35|+|ENST00000643617|CCDC9,CCDC9	ENSG00000105321|ENST00000221922|CCDC9	ENSG00000105321|ENST00000221922|CCDC9	MULTI-MATCH	OvCa9_classI_Rep2	2		2	593.830569	1185.64658	-0.81615	-0.00048465	-4.1855	-0.0024855	-5.0016	-0.0029701	593.8278887140685	39.805	1.6329	37.095	36.854	38.487	-2.7097	0.19924	-6.8174E-06	NaN	154.12	67	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79188			47900	418	39734	39755							0.061187027950154516
REKIDQERL	9	Unmodified	_REKIDQERL_					0	0	0		ENSG00000105321|ENST00000221922|CCDC9;chr19:47272161-47273357|427|26.67|0.0|21.35|+|ENST00000643617|CCDC9,CCDC9	ENSG00000105321|ENST00000221922|CCDC9	ENSG00000105321|ENST00000221922|CCDC9	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	593.830569	1185.64658	0.029336	1.7421E-05	-5.2125	-0.0030953	-5.1832	-0.0030779	593.8273783173668	39.723	1.7265	36.769	36.218	37.945	-2.9541	-0.12716	-0.0012266	NaN	154.12	63	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75945			47901	418	39734	39755							0.061187027950154516
REKIISAPLP	10	Unmodified	_REKIISAPLP_					0	0	0		ENSG00000044446|ENST00000379942|PHKA2	ENSG00000044446|ENST00000379942|PHKA2	ENSG00000044446|ENST00000379942|PHKA2	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.34423828125	2	562.345323	1122.67609	-5.152	-0.0028972	1.555	0.00087445	-3.597	-0.0020228	562.3462574940656	162.82	0.79391	161.19	160.94	161.73	-1.6336					30	22	2	0	0	0	0.80581	1	16105	16105		18.262	2.6203	1	19844			47902	1132	39735	39756	51356	51356					0.11966266811123205
REKIVEVMF	9	Oxidation (M)	_REKIVEVM(Oxidation (M))F_		REKIVEVM(1)F		REKIVEVM(82)F	0	0	1		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2;ACTR2|p.L303Gfs*32|1|0.04|ENSG00000138071|chr2:65265066-65265067|-/TGGAGTGCAGTGGTGCAGTCTCG|frameshift_variant	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	OvCa9_classI_Rep2	2	583.815185546875	2	583.815541	1165.61653	0.23473	0.00013704	-0.69401	-0.00040518	-0.45928	-0.00026814	583.8150071967733	80.981	2.5558	79.332	78.715	81.271	-1.6485					120	49	4	0	0	0	0.16562	6	6849	6846;6849;6856;6862;6875;6888		82.241	29.304	1	1381400			47903	4652	39736	39757	51357;51358;51359;51360;51361;51362	51358		149			0.040346278054357754
REKIVEVMF	9	Oxidation (M)	_REKIVEVM(Oxidation (M))F_		REKIVEVM(1)F		REKIVEVM(93)F	0	0	1		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2;ACTR2|p.L303Gfs*32|1|0.04|ENSG00000138071|chr2:65265066-65265067|-/TGGAGTGCAGTGGTGCAGTCTCG|frameshift_variant	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8165283203125	2	583.815541	1165.61653	-2.0009	-0.0011681	1.7288	0.0010093	-0.27205	-0.00015883	583.816415272618	81.845	2.948	79.543	78.666	81.614	-2.3016					145	59	4	0	0	0	0.1149	7	4603	4563;4566;4572;4583;4596;4603;4609		93.143	27.678	1	2106500			47904	4652	39736	39757	51363;51364;51365;51366;51367;51368;51369	51368		149			0.040346278054357754
REKIVEVMF	9	Oxidation (M)	_REKIVEVM(Oxidation (M))F_		REKIVEVM(1)F		REKIVEVM(99)F	0	0	1		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2;ACTR2|p.L303Gfs*32|1|0.04|ENSG00000138071|chr2:65265066-65265067|-/TGGAGTGCAGTGGTGCAGTCTCG|frameshift_variant	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	OvCa9_classI_Rep4_	4	583.815673828125	2	583.815541	1165.61653	-1.4334	-0.00083683	1.0693	0.00062428	-0.36406	-0.00021254	583.8158643228942	82.003	2.6257	79.32	78.668	81.294	-2.683					153	53	6	0	0	0	0.094616	4	6769	6757;6769;6782;6809		98.629	21.783	1	1734600			47905	4652	39736	39757	51370;51371;51372;51373	51371		149			0.040346278054357754
REKIVEVMF	9	Unmodified	_REKIVEVMF_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2;ACTR2|p.L303Gfs*32|1|0.04|ENSG00000138071|chr2:65265066-65265067|-/TGGAGTGCAGTGGTGCAGTCTCG|frameshift_variant	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8182373046875	2	575.818084	1149.62162	-0.060542	-3.4861E-05	-0.35862	-0.0002065	-0.41916	-0.00024136	575.8178355273783	92.029	1.9727	90.793	90.326	92.298	-1.2355					102	37	4	0	0	0	0.35694	1	8190	8190		56.434	19.987	1	777100			47906	4652	39736	39758	51374	51374					0.05278931668067344
REKIVEVMF	9	Unmodified	_REKIVEVMF_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2;ACTR2|p.L303Gfs*32|1|0.04|ENSG00000138071|chr2:65265066-65265067|-/TGGAGTGCAGTGGTGCAGTCTCG|frameshift_variant	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8179931640625	2	575.818084	1149.62162	-1.9285	-0.0011104	1.4172	0.00081607	-0.51123	-0.00029437	575.8188169351997	93.294	2.0645	91.332	90.932	92.997	-1.9617					117	40	4	0	0	0	0.37182	5	5987	5958;5964;5969;5981;5987		54.722	13.836	1	923250			47907	4652	39736	39758	51375;51376;51377;51378;51379	51379					0.05278931668067344
REKIVEVMF	9	Unmodified	_REKIVEVMF_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2;ACTR2|p.L303Gfs*32|1|0.04|ENSG00000138071|chr2:65265066-65265067|-/TGGAGTGCAGTGGTGCAGTCTCG|frameshift_variant	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8189697265625	2	575.818084	1149.62162	-0.88976	-0.00051234	0.42323	0.00024371	-0.46652	-0.00026863	575.8182150623272	93.926	1.9141	91.419	91.059	92.973	-2.5072					94	39	4	0	0	0	0.42576	1	8211	8211		49.536	8.1094	1	736500			47908	4652	39736	39758	51380	51380					0.05278931668067344
REKKEAEDSL	10	Unmodified	_REKKEAEDSL_					0	0	0		ENSG00000134440|ENST00000256854|NARS1;ENST00000411676.6_1_18:55274615-55283204:-|nuORF;nc|ENSG00000134440|O43776-2|NARS1	ENSG00000134440|ENST00000256854|NARS1	ENSG00000134440|ENST00000256854|NARS1	MULTI-MSMS	OvCa99_classI_Rep5	1	602.8119506835938	2	602.812042	1203.60953	-0.79885	-0.00048156	0.53668	0.00032352	-0.26217	-0.00015804	602.8122580296875	27.717	0.64849	27.717	27.542	28.19	0					32	12	4	0	0	0	0.32747	1	845	845		77.533	21.099	1	591170			47909	4297	39737	39759	51381	51381					0.01586986458573847
REKKEESEL	9	Unmodified	_REKKEESEL_					0	0	0		nc|ENSG00000067082|Q99612-3|KLF6;nc|ENSG00000067082|Q99612-2|KLF6;ENSG00000067082|ENST00000497571|KLF6	nc|ENSG00000067082|Q99612-3|KLF6	nc|ENSG00000067082|Q99612-3|KLF6	MULTI-MSMS	OvCa99_classI_Rep5	1	574.30126953125	2	574.30131	1146.58807	-0.92577	-0.00053167	0.35314	0.00020281	-0.57263	-0.00032886	574.3015482004614	26.067	0.59871	26.067	25.893	26.492	0					40	11	5	0	0	0	0.2784	2	658	634;658		65.465	10.597	1	3314600			47910	1365	39738	39760	51382;51383	51383					0.020636014298588634
REKKEESEL	9	Unmodified	_REKKEESEL_					0	0	0		nc|ENSG00000067082|Q99612-3|KLF6;nc|ENSG00000067082|Q99612-2|KLF6;ENSG00000067082|ENST00000497571|KLF6	nc|ENSG00000067082|Q99612-3|KLF6	nc|ENSG00000067082|Q99612-3|KLF6	MULTI-MSMS	OvCa9_classI_Rep2	2	574.3013916015625	2	574.30131	1146.58807	-0.32228	-0.00018508	-0.41994	-0.00024117	-0.74222	-0.00042626	574.3012965384783	30.687	0.83693	27.977	27.804	28.641	-2.7097					34	16	3	0	0	0	0.29519	1	861	861		63.534	6.8128	1	116960			47911	1365	39738	39760	51384	51384					0.020636014298588634
REKKKWPTGPH	11	Unmodified	_REKKKWPTGPH_					0	0	0			REV__ENST00000519604.5_1_20:61919777-61919975:+|nuORF	REV__ENST00000519604.5_1_20:61919777-61919975:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	455.259033203125	3	455.257961	1362.75205	1.5519	0.0007065	-1.8904	-0.00086062	-0.33853	-0.00015412	455.25703723228327	84.943	1.7623	82.297	81.931	83.693	-2.6463					100	35	4	0	0	0	0.70315	1	7127	7127		28.577	1.827	1	304000	+		47912	27046	39739	39761	51385	51385					0.08518663711265617
REKKKWPTGPH	11	Unmodified	_REKKKWPTGPH_					0	0	0			REV__ENST00000519604.5_1_20:61919777-61919975:+|nuORF	REV__ENST00000519604.5_1_20:61919777-61919975:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		3	455.257961	1362.75205	-1.0112	-0.00046037	0.41759	0.00019011	-0.59364	-0.00027026	455.25810840950066	84.532	2.1152	82.271	81.881	83.997	-2.261	-0.012808	0.00097988	NaN	28.577	119	42	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	370560	+		47913	27046	39739	39761							0.08518663711265617
REKKNSLHKV	10	Unmodified	_REKKNSLHKV_					0	0	0			REV__nc|ENSG00000137757|P51878-4|CASP5	REV__nc|ENSG00000137757|P51878-4|CASP5	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8694458007812	2	619.870028	1237.7255	-3.1194	-0.0019336	2.0434	0.0012667	-1.076	-0.00066696	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.79213	1	14728	14728		19.997	0.89325	1	806750	+		47914	28878	39740	39762	51386	51386					0.11614974819917734
REKLKTSRDKL	11	Unmodified	_REKLKTSRDKL_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	OvCa99_classI_Rep5	1	458.6124267578125	3	458.612292	1372.81505	-0.74431	-0.00034135	0.35448	0.00016257	-0.38983	-0.00017878	458.61238980116	28.265	0.49744	28.265	28.091	28.588	0					25	9	4	0	0	0	0.4744	1	912	912		55.721	17.007	1	324900			47915	7686	39741	39763	51387	51387					0.14355184708665547
REKLQEEML	9	Oxidation (M)	_REKLQEEM(Oxidation (M))L_		REKLQEEM(1)L		REKLQEEM(110)L	0	0	1		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa99_classI_Rep5	1	596.3057861328125	2	596.305538	1190.59652	-0.17714	-0.00010563	-0.016386	-9.7709E-06	-0.19352	-0.0001154	596.3054687087324	46.961	7.1463	46.961	46.587	53.733	0					374	164	4	0	0	0	0.056671	6	3418	3316;3364;3418;3442;3515;3594		114.89	19.079	1	16604000			47916	1049	39742	39764	51388;51389;51390;51391;51392;51393	51390		35			0.00884832074825681
REKLQEEML	9	Oxidation (M)	_REKLQEEM(Oxidation (M))L_		REKLQEEM(1)L		REKLQEEM(93)L	0	0	1		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa9_classI_Rep4_	4	596.3056030273438	2	596.305538	1190.59652	0.12404	7.3968E-05	0.41042	0.00024473	0.53446	0.0003187	596.3052757852319	52.184	3.2932	48.976	48.288	51.581	-3.208					175	64	5	0	0	0	0.1149	1	3069	3069		93.143	20.264	1	2307000			47917	1049	39742	39764	51394	51394		35			0.00884832074825681
REKLQEEML	9	Unmodified	_REKLQEEML_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa99_classI_Rep5	1	588.3096923828125	2	588.308081	1174.60161	-0.67736	-0.0003985	-0.67915	-0.00039955	-1.3565	-0.00079805	588.3079694282976	59.138	3.8097	59.138	58.852	62.661	0					260	93	6	0	0	0	0.024645	3	5056	5056;5116;5180		141.52	26.026	1	221970000			47918	1049	39742	39765	51395;51396;51397	51395					0.021291359374572494
REKLQEEML	9	Unmodified	_REKLQEEML_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa9_classI_Rep2	2	588.306884765625	2	588.308081	1174.60161	-1.0695	-0.0006292	1.0508	0.0006182	-0.018703	-1.1003E-05	588.3085738686653	63.984	2.3836	61.259	60.708	63.092	-2.7248					124	45	5	0	0	0	0.22035	1	4833	4833		72.879	14.649	1	1044000			47919	1049	39742	39765	51398	51398					0.021291359374572494
REKMTQIMF	9	Unmodified	_REKMTQIMF_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ACTB|p.K238Rfs*46|1|0.21|ENSG00000075624|chr7:5528372-5528372|C/-|frameshift_variant;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000196834|ENST00000451531|POTEI;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000188219|ENST00000683005|POTEE;ENST00000457622.1_1_6:46172676-46173294:+|nuORF;ENST00000446382.2_1_9:6834760-6835018:+|nuORF;ENST00000415776.1_1_Y:19869357-19869702:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OvCa9_classI_Rep2	2	592.3011474609375	2	592.301744	1182.58893	-0.076132	-4.5093E-05	-1.1546	-0.00068387	-1.2307	-0.00072896	592.3012086760319	80.961	1.31	79.312	78.765	80.075	-1.6485					94	25	6	0	0	0	0.32653	5	6850	6850;6861;6869;6882;6889		59.931	15.125	1	1420500			47920	1537;8634;5081	39743	39766	51399;51400;51401;51402;51403	51399					0.004944012735677461
REKMTQIMF	9	Unmodified	_REKMTQIMF_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ACTB|p.K238Rfs*46|1|0.21|ENSG00000075624|chr7:5528372-5528372|C/-|frameshift_variant;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000196834|ENST00000451531|POTEI;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000188219|ENST00000683005|POTEE;ENST00000457622.1_1_6:46172676-46173294:+|nuORF;ENST00000446382.2_1_9:6834760-6835018:+|nuORF;ENST00000415776.1_1_Y:19869357-19869702:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OvCa9_classI_Rep3	3	592.3023071289062	2	592.301744	1182.58893	-1.1031	-0.00065338	-0.56626	-0.0003354	-1.6694	-0.00098878	592.301413895625	81.905	2.5111	79.609	78.932	81.443	-2.2963					125	50	5	0	0	0	0.26076	4	4584	4584;4589;4595;4608		67.494	12.717	1	2078200			47921	1537;8634;5081	39743	39766	51404;51405;51406;51407	51404					0.004944012735677461
REKMTQIMF	9	Unmodified	_REKMTQIMF_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ACTB|p.K238Rfs*46|1|0.21|ENSG00000075624|chr7:5528372-5528372|C/-|frameshift_variant;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000196834|ENST00000451531|POTEI;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000188219|ENST00000683005|POTEE;ENST00000457622.1_1_6:46172676-46173294:+|nuORF;ENST00000446382.2_1_9:6834760-6835018:+|nuORF;ENST00000415776.1_1_Y:19869357-19869702:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OvCa9_classI_Rep4_	4	592.3024291992188	2	592.301744	1182.58893	-0.39134	-0.00023179	-0.82068	-0.00048609	-1.212	-0.00071788	592.3012802476371	82.184	2.4178	79.501	79.156	81.574	-2.683					96	49	4	0	0	0	0.13504	2	6793	6781;6793		87.696	36.361	1	1637000			47922	1537;8634;5081	39743	39766	51408;51409	51409					0.004944012735677461
REKMTQIMF	9	Oxidation (M)	_REKMTQIM(Oxidation (M))F_		REKMTQIM(1)F		REKM(-63)TQIM(63)F	0	0	1		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ACTB|p.K238Rfs*46|1|0.21|ENSG00000075624|chr7:5528372-5528372|C/-|frameshift_variant;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000196834|ENST00000451531|POTEI;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000188219|ENST00000683005|POTEE;ENST00000457622.1_1_6:46172676-46173294:+|nuORF;ENST00000446382.2_1_9:6834760-6835018:+|nuORF;ENST00000415776.1_1_Y:19869357-19869702:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OvCa9_classI_Rep3	3	600.2990112304688	2	600.299201	1198.58385	2.214	0.0013291	-2.9036	-0.001743	-0.68954	-0.00041393	600.2975706629667	71.676	3.4899	69.074	67.52	71.01	-2.6023					163	69	5	0	0	0	0.22035	3	3355	3355;3362;3374		72.879	25.222	2	949150			47923	1537;8634;5081	39743	39767	51410;51411;51412	51410		55			-0.007499025890638222
REKMTQIMF	9	Oxidation (M)	_REKMTQIM(Oxidation (M))F_		REKMTQIM(1)F		REKM(-74)TQIM(74)F	0	0	1		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ACTB|p.K238Rfs*46|1|0.21|ENSG00000075624|chr7:5528372-5528372|C/-|frameshift_variant;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000196834|ENST00000451531|POTEI;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000188219|ENST00000683005|POTEE;ENST00000457622.1_1_6:46172676-46173294:+|nuORF;ENST00000446382.2_1_9:6834760-6835018:+|nuORF;ENST00000415776.1_1_Y:19869357-19869702:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OvCa9_classI_Rep4_	4	600.30029296875	2	600.299201	1198.58385	-0.70407	-0.00042265	0.13859	8.3194E-05	-0.56548	-0.00033946	600.2991341150752	72.819	2.5055	69.423	68.618	71.123	-3.3961					122	51	4	0	0	0	0.094791	2	5602	5602;5613		98.582	27.766	2	1316000			47924	1537;8634;5081	39743	39767	51413;51414	51413		55			-0.007499025890638222
REKNLEPE	8	Unmodified	_REKNLEPE_					0	0	0			REV__nc|ENSG00000065675|Q04759-3|PRKCQ	REV__nc|ENSG00000065675|Q04759-3|PRKCQ	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.3161926269531	2	507.764363	1013.51417	-0.47357	-0.00024046	-2.2309	-0.0011328	-2.7045	-0.0013732	507.7630152650437	118.05	3.4119	117.01	116.14	119.55	-1.0324					98	68	2	0	0	0	0.028476	1	8846	8846		67.494	14.557	1	86860	+		47925	16802	39744	39768	51415	51415					0.007956780581821477
REKRFQKSLRK	11	Unmodified	_REKRFQKSLRK_					0	0	0		nc|ENSG00000174796|Q8TBB0-2|THAP6;ENSG00000174796|ENST00000311638|THAP6	nc|ENSG00000174796|Q8TBB0-2|THAP6	nc|ENSG00000174796|Q8TBB0-2|THAP6	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.6344299316406	3	492.635431	1474.88446	-6.2177	-0.0030631	3.97	0.0019558	-2.2477	-0.0011073	492.63727713835067	161.54	1.8887	159.91	158.52	160.4	-1.6239					108	42	3	0	0	0	0.72531	1	15966	15966		11.455	1.3507	1	60954			47926	7491	39745	39769	51416	51416					0.1660168844805412
REKRREHSRER	11	Unmodified	_REKRREHSRER_					0	0	0		ENSG00000100813|ENST00000605057|ACIN1;nc|ENSG00000100813|Q9UKV3-5|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1;nc|ENSG00000100813|Q9UKV3-3|ACIN1;nc|ENSG00000100813|Q9UKV3-2|ACIN1	ENSG00000100813|ENST00000605057|ACIN1	ENSG00000100813|ENST00000605057|ACIN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.301025390625	3	513.617211	1537.8298	-1.9257	-0.00098907	-1.0813	-0.00055536	-3.007	-0.0015444	513.6165889854944	49.987	1.1943	46.846	46.558	47.753	-3.1416					40	22	2	0	0	0	0.026302	1	2933	2933		5.1424	0	1	211130			47927	2107	39746	39770	51417	51417					0.0824006962934618
REKRVTTTHR	10	Unmodified	_REKRVTTTHR_					0	0	0			REV__chr1:32657572-32660606|109|10.51|0.32|5.03|+|0|RBBP4,None|1	REV__chr1:32657572-32660606|109|10.51|0.32|5.03|+|0|RBBP4,None|1	MULTI-MSMS	OvCa9_classI_Rep3	3	642.3623046875	2	642.368184	1282.72182	-6.9842	-0.0044864	-2.7522	-0.0017679	-9.7364	-0.0062543	642.3673416053439	164.93	1.6323	163.53	162.84	164.47	-1.4083					217	58	5	0	0	0	0.69073	1	14397	14397		31.53	3.4483	1	189920	+		47928	15824	39747	39771	51418	51418					0.09176305046048583
REKTKAERN	9	Unmodified	_REKTKAERN_					0	0	0		tr|A0A7D6VPT6|A0A7D6VPT6_9CLOTMBOATfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00250PE=3SV=1	tr|A0A7D6VPT6|A0A7D6VPT6_9CLOTMBOATfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00250PE=3SV=1	tr|A0A7D6VPT6|A0A7D6VPT6_9CLOTMBOATfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00250PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.7998046875	2	566.315086	1130.61562	0.30822	0.00017455	2.4772	0.0014029	2.7854	0.0015774	566.31586769762	31.932	0.54586	31.932	31.757	32.303	0					25	10	4	0	0	0	0.027425	1	1360	1360		82.75	9.8712	1	201950			47929	34797	39748	39772	51419	51419					0.055535494807600116
REKTNTLKKRP	11	Unmodified	_REKTNTLKKRP_					0	0	0		tr|A0A7D6VRY3|A0A7D6VRY3_9CLOTTniQfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20755PE=4SV=1	tr|A0A7D6VRY3|A0A7D6VRY3_9CLOTTniQfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20755PE=4SV=1	tr|A0A7D6VRY3|A0A7D6VRY3_9CLOTTniQfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20755PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	457.60784912109375	3	457.612404	1369.81538	-6.2055	-0.0028397	-3.1156	-0.0014257	-9.3211	-0.0042654	457.6108688134911	157.03	3.4081	155.86	154.91	158.32	-1.1707					147	80	2	0	0	0	0.72502	1	13617	13617		15.337	4.7507	1	68588			47930	34965	39749	39773	51420	51420					0.14526604428510836
RELAAKAGGF	10	Unmodified	_RELAAKAGGF_					0	0	0		ENST00000587125.1_1_17:58040633-58079710:-|nuORF;nc|ENSG00000108406|Q8IX18-4|DHX40;nc|ENSG00000108406|Q8IX18-3|DHX40;nc|ENSG00000108406|Q8IX18-2|DHX40;ENSG00000108406|ENST00000251241|DHX40	ENST00000587125.1_1_17:58040633-58079710:-|nuORF	ENST00000587125.1_1_17:58040633-58079710:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.30712890625	2	510.285266	1018.55598	1.3256	0.00067645	-2.5347	-0.0012934	-1.2091	-0.00061697	510.2841076513205	149.78	1.9849	149.78	149.06	151.04	0					68	39	3	0	0	0	0.026931	1	17630	17630		37.812	18.452	1	81513			47931	2653	39750	39774	51421	51421					0.047442785373846164
RELARPIL	8	Unmodified	_RELARPIL_					0	0	0			REV__ENST00000580676.1_1_17:26905530-26906263:-|nuORF	REV__ENST00000580676.1_1_17:26905530-26906263:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	484.3074035644531	2	484.306001	966.597449	0.93371	0.0004522	3.3614	0.0016279	4.2951	0.0020801	484.3074830204417	129.68	1.0861	129.46	129.12	130.21	-0.22696					46	21	4	0	0	0	0.75426	1	12763	12763		18.324	0.95945	1	157450	+		47932	27823	39751	39775	51422	51422					0.11281459296708363
RELASRLKVNP	11	Unmodified	_RELASRLKVNP_					0	0	0		tr|A0A7D6VUJ3|A0A7D6VUJ3_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_22630PE=4SV=1	tr|A0A7D6VUJ3|A0A7D6VUJ3_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_22630PE=4SV=1	tr|A0A7D6VUJ3|A0A7D6VUJ3_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_22630PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8818969726562	2	641.883136	1281.75172	-3.6311	-0.0023307	2.7968	0.0017952	-0.8343	-0.00053552	641.8847801872174	153.39	4.0845	151.94	150.68	154.77	-1.4516					420	106	6	0	0	0	0.72466	1	15065	15065		19.997	3.5236	1	809780			47933	35188	39752	39776	51423	51423					0.12211243991418996
RELEECRAL	9	Unmodified	_RELEECRAL_					0	0	0			REV__ENSG00000196544|ENST00000389017|BORCS6	REV__ENSG00000196544|ENST00000389017|BORCS6	MULTI-MSMS	OvCa9_classI_Rep3	3	559.7827758789062	2	559.784773	1117.55499	-2.5577	-0.0014318	-0.81331	-0.00045528	-3.371	-0.001887	559.7841057030945	140.78	1.9736	139.75	139.43	141.41	-1.0339					83	39	3	0	0	0	0.34132	2	11606	11606;11625		58.23	8.7884	1	163230	+		47934	22841	39753	39777	51424;51425	51424					0.0009169610616481805
RELEETNQKL	10	Unmodified	_RELEETNQKL_					0	0	0		ENSG00000140743|ENST00000268383|CDR2	ENSG00000140743|ENST00000268383|CDR2	ENSG00000140743|ENST00000268383|CDR2	MULTI-MSMS	OvCa99_classI_Rep5	1	630.3323974609375	2	630.333141	1258.65173	-0.44534	-0.00028071	0.15825	9.975E-05	-0.28709	-0.00018096	630.333225648136	44.374	0.76306	44.374	44.169	44.932	0					41	16	4	0	0	0	0.084482	2	2993	2993;3020		117.53	42.482	1	3678900			47935	4872	39754	39778	51426;51427	51426					0.03274961866964077
RELEETNQKL	10	Unmodified	_RELEETNQKL_					0	0	0		ENSG00000140743|ENST00000268383|CDR2	ENSG00000140743|ENST00000268383|CDR2	ENSG00000140743|ENST00000268383|CDR2	MULTI-MSMS	OvCa99_classI_Rep5	1	420.55755615234375	3	420.557853	1258.65173	-0.44794	-0.00018838	0.59479	0.00025014	0.14686	6.1761E-05	420.55797319061776	44.389	0.71708	44.389	44.215	44.932	0					29	15	4	0	0	0	0.32141	1	2996	2996		80.916	30.883	1	978810			47936	4872	39754	39778	51428	51428					0.03274961866964077
RELEGVRRRS	10	Unmodified	_RELEGVRRRS_					0	0	0			REV__nc|ENSG00000167110|Q08379|GOLGA2	REV__nc|ENSG00000167110|Q08379|GOLGA2	MULTI-MSMS	OvCa99_classI_Rep5	1	629.3641357421875	2	629.360359	1256.70617	2.1096	0.0013277	1.923	0.0012103	4.0326	0.002538	629.3615032603344	87.606	1.2515	87.606	87.216	88.467	0					75	29	4	0	0	0	0.24109	1	9268	9268		88.177	9.9132	1	8622800	+		47937	21253	39755	39779	51429	51429					0.08808018529043693
RELESLILRE	10	Unmodified	_RELESLILRE_					0	0	0		ENST00000533146.5_1_15:40979267-40987285:-|nuORF	ENST00000533146.5_1_15:40979267-40987285:-|nuORF	ENST00000533146.5_1_15:40979267-40987285:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	629.364013671875	2	629.361702	1256.70885	2.1096	0.0013277	-0.21036	-0.00013239	1.8992	0.0011953	629.3615032603344	87.606	1.2515	87.606	87.216	88.467	0					75	29	4	0	0	0	0.20001	1	9298	9298		94.409	6.2322	1	8622800			47938	13336	39756	39780	51430	51430					0.09076429143328824
RELETVREL	9	Unmodified	_RELETVREL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OvCa99_classI_Rep5	1	572.8213500976562	2	572.81967	1143.62479	-0.71683	-0.00041061	0.58796	0.0003368	-0.12887	-7.3819E-05	572.8198977734071	59.785	0.50645	59.785	59.573	60.079	0					29	12	3	0	0	0	0.023079	1	5174	5174		143.37	17.131	1	3765400			47939	4552	39757	39781	51431	51431					0.058718980464163906
RELGERLL	8	Unmodified	_RELGERLL_					0	0	0		nc|ENSG00000140691|Q96C12-3|ARMC5;nc|ENSG00000140691|Q96C12-2|ARMC5;ZNF607-ARMC5|3|fusion;ZNF607-ARMC5|1|fusion;ENSG00000140691|ENST00000268314|ARMC5	nc|ENSG00000140691|Q96C12-3|ARMC5	nc|ENSG00000140691|Q96C12-3|ARMC5	MULTI-MSMS	OvCa99_classI_Rep5	1	493.2940673828125	2	493.293091	984.571629	-0.29843	-0.00014721	0.38531	0.00019007	0.086883	4.2859E-05	493.2930030198361	61.063	0.77028	61.063	60.772	61.542	0					56	17	5	0	0	0	0.66057	1	5357	5357		51.335	5.3632	1	2572200			47940	4869	39758	39782	51432	51432					0.07872565054424285
RELGFSSNLL	10	Unmodified	_RELGFSSNLL_					0	0	0		ENST00000467557.1_1_1:87346375-87379497:-|nuORF;ENST00000331835.9_2_1:87346375-87379803:-|nuORF;nc|ENSG00000183291|O60613-2|SELENOF;ENSG00000183291|ENST00000331835|SELENOF	ENST00000467557.1_1_1:87346375-87379497:-|nuORF	ENST00000467557.1_1_1:87346375-87379497:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	568.309326171875	2	568.308938	1134.60332	0.90941	0.00051683	-1.0224	-0.00058106	-0.11302	-6.4233E-05	568.8093701973515	105.68	1.5339	105.68	104.96	106.49	0					79	34	5	0	0	0	0.46863	1	11849	11849		58.63	8.5961	1	2388800			47941	8061	39759	39783	51433	51433					0.04140513017705416
RELGFSSNLL	10	Unmodified	_RELGFSSNLL_					0	0	0		ENST00000467557.1_1_1:87346375-87379497:-|nuORF;ENST00000331835.9_2_1:87346375-87379803:-|nuORF;nc|ENSG00000183291|O60613-2|SELENOF;ENSG00000183291|ENST00000331835|SELENOF	ENST00000467557.1_1_1:87346375-87379497:-|nuORF	ENST00000467557.1_1_1:87346375-87379497:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	568.30859375	2	568.308938	1134.60332	0.18699	0.00010627	-1.4118	-0.00080236	-1.2249	-0.00069609	568.3083887469526	107.06	1.5103	105.8	105.06	106.57	-1.267					48	23	3	0	0	0	0.46863	1	7580	7580		58.63	10.67	1	238690			47942	8061	39759	39783	51434	51434					0.04140513017705416
RELGLPEEL	9	Unmodified	_RELGLPEEL_					0	0	0		KDM4C-GMPS|1|fusion;KDM4C-GMPS|2|fusion;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS	KDM4C-GMPS|1|fusion	KDM4C-GMPS|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	528.2919311523438	2	528.290214	1054.56587	3.0457	0.001609	-1.1327	-0.00059839	1.913	0.0010106	528.2895646285209	97.764	0.72696	97.764	97.479	98.206	0					29	16	2	0	0	0	0.2077	1	10746	10746		75.043	20.267	1	1988600			47943	14520	39760	39784	51435	51435					0.040774217520947786
RELGLPEEL	9	Unmodified	_RELGLPEEL_					0	0	0		KDM4C-GMPS|1|fusion;KDM4C-GMPS|2|fusion;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS	KDM4C-GMPS|1|fusion	KDM4C-GMPS|1|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	528.290214	1054.56587	-0.93089	-0.00049178	0.45006	0.00023776	-0.48083	-0.00025402	528.2904581551626	98.658	1.0945	97.765	97.41	98.504	-0.89305	-0.033735	0.00061378	NaN	75.043	41	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70505			47944	14520	39760	39784							0.040774217520947786
RELGLPEEL	9	Unmodified	_RELGLPEEL_					0	0	0		KDM4C-GMPS|1|fusion;KDM4C-GMPS|2|fusion;nc|ENSG00000163655|P49915-2|GMPS;ENSG00000163655|ENST00000496455|GMPS	KDM4C-GMPS|1|fusion	KDM4C-GMPS|1|fusion	MULTI-MATCH	OvCa9_classI_Rep3	3		2	528.290214	1054.56587	-0.70328	-0.00037153	0.51674	0.00027299	-0.18654	-9.8545E-05	528.2906020350321	99.552	0.67343	97.867	97.624	98.297	-1.685	0.068292	0.00068423	NaN	75.043	31	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77932			47945	14520	39760	39784							0.040774217520947786
RELHEKFEHL	10	Unmodified	_RELHEKFEHL_					0	0	0		nc|ENSG00000164402|Q92599-3|SEPTIN8;nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8;ENSG00000164402|ENST00000378719|SEPTIN8	nc|ENSG00000164402|Q92599-3|SEPTIN8	nc|ENSG00000164402|Q92599-3|SEPTIN8	MULTI-MSMS	OvCa99_classI_Rep5	1	446.5701599121094	3	446.570204	1336.68878	-0.50433	-0.00022522	0.53537	0.00023908	0.031037	1.386E-05	446.57029172976627	43.701	0.60202	43.701	43.478	44.08	0					43	13	5	0	0	0	0.23197	1	2912	2912		89.561	22.599	1	1182500			47946	6453	39761	39785	51436	51436					0.03390678203368225
RELHLDNNKL	10	Unmodified	_RELHLDNNKL_					0	0	0		nc|ENSG00000011465|P07585-3|DCN;nc|ENSG00000011465|P07585-2|DCN;ENSG00000011465|ENST00000052754|DCN;ENSG00000182492|ENST00000331595|BGN	nc|ENSG00000011465|P07585-3|DCN	nc|ENSG00000011465|P07585-3|DCN	MULTI-MSMS	OvCa99_classI_Rep5	1	417.89874267578125	3	417.898321	1250.67313	0.083352	3.4833E-05	-0.15807	-6.6058E-05	-0.07472	-3.1225E-05	417.89816991619364	49.167	0.78401	49.167	48.895	49.679	0					46	17	4	0	0	0	0.05917	1	3648	3648		125.68	52.803	1	2283700			47947	966	39762	39786	51437	51437					0.057823916863071645
RELKEKEATL	10	Unmodified	_RELKEKEATL_					0	0	0		nc|ENSG00000065413|Q8N8A2-3|ANKRD44;nc|ENSG00000065413|Q8N8A2-4|ANKRD44;ENSG00000065413|ENST00000282272|ANKRD44;nc|ENSG00000065413|Q8N8A2-2|ANKRD44	nc|ENSG00000065413|Q8N8A2-3|ANKRD44	nc|ENSG00000065413|Q8N8A2-3|ANKRD44	MULTI-MSMS	OvCa99_classI_Rep5	1	406.2349853515625	3	406.23471	1215.6823	0.64077	0.0002603	-0.20349	-8.2664E-05	0.43728	0.00017764	406.23455422562245	36.157	0.68661	36.157	35.846	36.532	0					34	14	4	0	0	0	0.45788	1	1882	1882		60.167	0.048709	1	577290			47948	1325	39763	39787	51438	51438					0.08308740252005009
RELKEQMEL	9	Unmodified	_RELKEQMEL_					0	0	0			REV__ENSG00000099308|ENST00000687212|MAST3	REV__ENSG00000099308|ENST00000687212|MAST3	MULTI-MSMS	OvCa9_classI_Rep2	2	588.3065185546875	2	588.308081	1174.60161	-1.0695	-0.0006292	1.0508	0.0006182	-0.018703	-1.1003E-05	588.3085738686653	63.984	2.3836	61.259	60.708	63.092	-2.7248					124	45	5	0	0	0	0.2422	1	4858	4858		69.628	0	1	1044000	+		47949	17320	39764	39788	51439	51439					0.021291359374572494
RELLERGHR	9	Unmodified	_RELLERGHR_					0	0	0		ENST00000314222.4_1_11:2949785-2950526:-|nuORF	ENST00000314222.4_1_11:2949785-2950526:-|nuORF	ENST00000314222.4_1_11:2949785-2950526:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	583.3311157226562	2	583.33107	1164.64759	-0.46914	-0.00027366	0.30175	0.00017602	-0.16738	-9.764E-05	583.3312834632095	22.835	0.83635	22.835	22.66	23.497	0					42	17	4	0	0	0	0.64427	1	277	277		26.693	0	1	1372800			47950	10319	39765	39789	51440	51440					0.0718496195456737
RELLSHNEEF	10	Unmodified	_RELLSHNEEF_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MSMS	OvCa99_classI_Rep5	1	637.3145141601562	2	637.312209	1272.60986	-1.0729	-0.00068375	0.56096	0.0003575	-0.5119	-0.00032624	637.3124329501941	64.093	0.64703	64.093	63.814	64.461	0					43	15	4	0	0	0	0.22809	1	5801	5801		90.149	30.031	1	3360100			47951	4651	39766	39790	51441	51441					-0.015535938215862188
RELNEALEL	9	Unmodified	_RELNEALEL_					0	0	0		ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-4|TP53;chr17:7675215-7675994|303|31.2|0.42|6.22|-|ENST00000604348|TP53,TP53;nc|ENSG00000141510|P04637-7|TP53	ENSG00000141510|ENST00000269305|TP53	ENSG00000141510|ENST00000269305|TP53	MULTI-MSMS	OvCa99_classI_Rep5	1	543.7945556640625	2	543.793121	1085.57169	1.9995	0.0010873	0.077333	4.2053E-05	2.0768	0.0011293	543.7930578585862	90.558	0.62756	90.558	90.31	90.938	0					34	15	3	0	0	0	0.16264	1	9720	9720		82.75	13.123	1	4146400			47952	4919	39767	39791	51442	51442					0.032325202637593975
RELNRMWN	8	Unmodified	_RELNRMWN_					0	0	0		ENST00000545737.5_1_12:28459732-28460593:+|nuORF	ENST00000545737.5_1_12:28459732-28460593:+|nuORF	ENST00000545737.5_1_12:28459732-28460593:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.78466796875	2	559.779825	1117.5451	1.5627	0.00087476	4.0239	0.0022525	5.5866	0.0031273	559.7818841188371	141.15	1.7806	139.69	139.4	141.18	-1.4627					70	33	3	0	0	0	0.71267	1	13784	13784		40.778	1.7567	1	131740			47953	13526	39768	39792	51443	51443					-0.008974471085366531
RELPSLEQKL	10	Unmodified	_RELPSLEQKL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	606.8522338867188	2	606.85097	1211.68739	0.50034	0.00030363	-0.14042	-8.5214E-05	0.35992	0.00021842	606.8508043437984	73.847	0.76413	73.847	73.56	74.324	0					63	19	4	0	0	0	0.023817	2	7255	7255;7284		143.37	53.004	1	9364300			47954	6293	39769	39793	51444;51445	51444					0.09001044114620527
RELQSKEFL	9	Unmodified	_RELQSKEFL_					0	0	0		ENST00000528098.5_1_11:57182763-57193651:-|nuORF;ENSG00000134802|ENST00000395124|SLC43A3;nc|ENSG00000134802|Q8NBI5-2|SLC43A3	ENST00000528098.5_1_11:57182763-57193651:-|nuORF	ENST00000528098.5_1_11:57182763-57193651:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	575.3185424804688	2	575.316763	1148.61897	-0.23118	-0.000133	-0.072511	-4.1717E-05	-0.30369	-0.00017472	575.3165681804315	60.794	0.51167	60.794	60.602	61.113	0					27	11	3	0	0	0	0.1944	1	5330	5330		77.318	3.0625	1	863550			47955	4330	39770	39794	51446	51446					0.05060799534749094
RELRERELR	9	Unmodified	_RELRERELR_					0	0	0			REV__nc|ENSG00000154380|Q8N8S7-3|ENAH	REV__nc|ENSG00000154380|Q8N8S7-3|ENAH	MULTI-MSMS	OvCa99_classI_Rep5	1	628.8632202148438	2	628.862734	1255.71092	0.066591	4.1877E-05	-0.30969	-0.00019475	-0.2431	-0.00015288	628.8625069688478	33.209	0.39476	33.209	32.989	33.384	0					21	7	4	0	0	0	0.22035	1	1507	1507		72.879	0	1	372160	+		47956	20381	39771	39795	51447	51447					0.09328902671791184
RELRERELR	9	Unmodified	_RELRERELR_					0	0	0			REV__nc|ENSG00000154380|Q8N8S7-3|ENAH	REV__nc|ENSG00000154380|Q8N8S7-3|ENAH	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	628.862734	1255.71092	0.066591	4.1877E-05	-0.30969	-0.00019475	-0.2431	-0.00015288	628.8625069688478	33.209	0.39476	33.209	32.989	33.384	0	-0.12043	0.00065018	NaN	72.879	21	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	372160	+		47957	20381	39771	39795							0.09328902671791184
RELRPQGSAR	10	Unmodified	_RELRPQGSAR_					0	0	0		ENSG00000142684|ENST00000374266|ZNF593	ENSG00000142684|ENST00000374266|ZNF593	ENSG00000142684|ENST00000374266|ZNF593	MULTI-MSMS	OvCa99_classI_Rep5	1	585.33251953125	2	585.328528	1168.6425	-0.097062	-5.6813E-05	3.4708	0.0020316	3.3737	0.0019747	585.3304938700162	52.636	1.0418	52.636	52.347	53.389	0					46	23	3	0	0	0	0.52162	1	4136	4136		51.528	5.5555	1	2002500			47958	4991	39772	39796	51448	51448					0.06492658091951853
RELSDEIQV	9	Unmodified	_RELSDEIQV_					0	0	0		ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.8043823242188	2	544.782753	1087.55095	-0.48073	-0.00026189	-1.185	-0.00064557	-1.6657	-0.00090746	544.781199660613	54.333	0.33375	54.333	54.214	54.547	0					11	7	2	0	0	0	0.027453	1	4399	4399		54.776	8.8244	1	91358			47959	4115	39773	39797	51449	51449					0.010679298840841511
RELVEKNSQL	10	Unmodified	_RELVEKNSQL_					0	0	0		nc|ENSG00000157514|Q99576-5|TSC22D3;nc|ENSG00000157514|Q99576|TSC22D3;ENSG00000157514|ENST00000372383|TSC22D3	nc|ENSG00000157514|Q99576-5|TSC22D3	nc|ENSG00000157514|Q99576-5|TSC22D3	MULTI-MSMS	OvCa99_classI_Rep5	1	608.3383178710938	2	608.338227	1214.6619	0.56151	0.00034159	-0.99181	-0.00060336	-0.4303	-0.00026177	608.3375696541311	45.961	1.0989	45.961	45.71	46.809	0					58	24	4	0	0	0	0.025067	1	3206	3206		131.62	35.583	1	6031200			47960	5896	39774	39798	51450	51450					0.0631556959219779
REMDEQIRL	9	Unmodified	_REMDEQIRL_					0	0	0		nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;ENST00000600996.1_1_19:42012510-42012810:+|nuORF;ENST00000413233.1_1_7:116612221-116612569:-|nuORF	nc|ENSG00000143549|P06753-3|TPM3	nc|ENSG00000143549|P06753-3|TPM3	MULTI-MSMS	OvCa99_classI_Rep5	1	595.3053588867188	2	595.303329	1188.59211	-0.22642	-0.00013479	-0.34107	-0.00020304	-0.56748	-0.00033783	595.3031870689508	67.703	1.3653	67.703	67.408	68.774	0					70	33	4	0	0	0	0.0084406	2	6335	6335;6364		177.3	41.037	1	28595000			47961	15075	39775	39799	51451;51452	51451					0.005353676519234796
REMDEQIRL	9	Oxidation (M)	_REM(Oxidation (M))DEQIRL_		REM(1)DEQIRL		REM(78)DEQIRL	0	0	1		nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;ENST00000600996.1_1_19:42012510-42012810:+|nuORF;ENST00000413233.1_1_7:116612221-116612569:-|nuORF	nc|ENSG00000143549|P06753-3|TPM3	nc|ENSG00000143549|P06753-3|TPM3	MULTI-MSMS	OvCa9_classI_Rep4_	4	603.30224609375	2	603.300787	1204.58702	0.90802	0.00054781	-0.87728	-0.00052926	0.030747	1.855E-05	603.3000594026837	60.699	1.4731	57.269	56.799	58.272	-3.43					67	29	4	0	0	0	0.18887	1	4131	4131		78.264	9.4176	1	738720			47962	15075	39775	39800	51453	51453		369			-0.007089362107080888
REMDEQIRL	9	Oxidation (M)	_REM(Oxidation (M))DEQIRL_					0	0	1		nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;ENST00000600996.1_1_19:42012510-42012810:+|nuORF;ENST00000413233.1_1_7:116612221-116612569:-|nuORF	nc|ENSG00000143549|P06753-3|TPM3	nc|ENSG00000143549|P06753-3|TPM3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	603.300787	1204.58702	-1.1023	-0.00066504	1.0776	0.0006501	-0.024767	-1.4942E-05	603.3012633216704	60.05	2.2513	57.28	56.672	58.924	-2.7702	0.0054861	0.00062485	NaN	78.264	76	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231360			47963	15075	39775	39800				369			-0.007089362107080888
REMEEEAEKL	10	Unmodified	_REMEEEAEKL_					0	0	0		ENSG00000100836|ENST00000216727|PABPN1;nc|ENSG00000258643|Q92843-2|BCL2L2;ENSG00000258643|ENST00000678502|BCL2L2-PABPN1;ENST00000556809.1_1_14:23791392-23792332:+|nuORF;nc|ENSG00000100836|Q86U42-2|PABPN1	ENSG00000100836|ENST00000216727|PABPN1	ENSG00000100836|ENST00000216727|PABPN1	MULTI-MSMS	OvCa99_classI_Rep5	1	632.300048828125	2	632.29791	1262.58127	0.079529	5.0286E-05	-0.34102	-0.00021563	-0.26149	-0.00016534	632.2976250278024	51.525	0.96817	51.525	51.291	52.259	0					54	22	3	0	0	0	0.022626	1	3970	3970		144.77	27.242	1	7482600			47964	2110	39776	39801	51454	51454					-0.03952079513010176
REMEEEAEKL	10	Unmodified	_REMEEEAEKL_					0	0	0		ENSG00000100836|ENST00000216727|PABPN1;nc|ENSG00000258643|Q92843-2|BCL2L2;ENSG00000258643|ENST00000678502|BCL2L2-PABPN1;ENST00000556809.1_1_14:23791392-23792332:+|nuORF;nc|ENSG00000100836|Q86U42-2|PABPN1	ENSG00000100836|ENST00000216727|PABPN1	ENSG00000100836|ENST00000216727|PABPN1	MULTI-MSMS	OvCa99_classI_Rep5	1	421.8690490722656	3	421.867699	1262.58127	0.012588	5.3105E-06	-0.15844	-6.6841E-05	-0.14585	-6.153E-05	421.86758453005433	51.516	0.53845	51.516	51.291	51.829	0					29	12	3	0	0	0	0.18515	1	3979	3979		108.31	9.5585	1	1529100			47965	2110	39776	39801	51455	51455					-0.03952079513010176
REMGVDVHF	9	Unmodified	_REMGVDVHF_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa99_classI_Rep5	1	545.2621459960938	2	545.260933	1088.50731	1.7831	0.00097223	0.27022	0.00014734	2.0533	0.0011196	545.2609483966513	77.717	0.63002	77.717	77.381	78.011	0					36	14	3	0	0	0	0.22621	1	7841	7841		71.877	6.4121	1	2831700			47966	3687	39777	39802	51456	51456					-0.033399580940340456
REMLIRVNM	9	Unmodified	_REMLIRVNM_					0	0	0		nc|ENSG00000164402|Q92599-3|SEPTIN8;nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8;ENSG00000164402|ENST00000378719|SEPTIN8;ENST00000506047.1_1_4:77936059-77941836:+|nuORF;ENSG00000125354|ENST00000394610|SEPTIN6;nc|ENSG00000125354|Q14141-4|SEPTIN6;nc|ENSG00000125354|Q14141|SEPTIN6;ENSG00000138758|ENST00000264893|SEPTIN11;nc|ENSG00000138758|Q9NVA2-2|SEPTIN11	nc|ENSG00000164402|Q92599-3|SEPTIN8;ENSG00000125354|ENST00000394610|SEPTIN6;ENSG00000138758|ENST00000264893|SEPTIN11	ENSG00000138758|ENST00000264893|SEPTIN11	MULTI-MSMS	OvCa99_classI_Rep5	1	581.3160400390625	2	581.315186	1160.61582	2.0416	0.0011868	0.020091	1.1679E-05	2.0617	0.0011985	581.31513373811	80.509	0.67654	80.509	80.234	80.91	0					29	15	2	0	0	0	0.27001	1	8250	8250		66.429	3.123	1	3227800			47967	3701;4722;6453	39778	39803	51457	51457					0.04193509884771629
RENEKEKSAL	10	Unmodified	_RENEKEKSAL_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;nc|ENSG00000116871|Q3KQU3-2|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MULTI-MSMS	OvCa99_classI_Rep5	1	602.3206787109375	2	602.320034	1202.62551	-0.4413	-0.00026581	0.49181	0.00029623	0.050511	3.0424E-05	602.3202689284926	25.569	0.65047	25.569	25.342	25.992	0					40	12	5	0	0	0	0.58667	1	576	576		43.651	4.8972	1	628950			47968	3215	39779	39804	51458	51458					0.03230692695478865
RENLEKTRL	9	Unmodified	_RENLEKTRL_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	OvCa99_classI_Rep5	1	579.83251953125	2	579.833111	1157.65167	-1.2469	-0.00072302	0.31309	0.00018154	-0.93385	-0.00054148	579.8333083329898	36.51	1.6391	36.51	36.257	37.896	0					85	35	5	0	0	0	0.084152	2	1918	1918;1968		101.46	23.196	1	7957100			47969	7686	39780	39805	51459;51460	51459					0.07915006657594859
RENTQTTIKL	10	Unmodified	_RENTQTTIKL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;HNRNPK|p.Y280Mfs*4|1|0.05|ENSG00000165119|chr9:83971997-83971997|A/-|frameshift_variant;ENST00000485383.1_1_3:96068520-96068997:+|nuORF	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	OvCa9_classI_Rep4_	4	602.3399658203125	2	602.338227	1202.6619	0.72373	0.00043593	-0.71476	-0.00043053	0.0089667	5.401E-06	602.3377933815526	57.101	1.4736	53.756	53.425	54.899	-3.3449					54	28	2	0	0	0	0.17251	1	3688	3688		98.582	0	1	727130			47970	6523	39781	39806	51461	51461					0.06867569592168365
RENYTYVEI	9	Unmodified	_RENYTYVEI_					0	0	0			REV__tr|A0A7D6ZZY0|A0A7D6ZZY0_9CLOTDUF445domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21985PE=3SV=1	REV__tr|A0A7D6ZZY0|A0A7D6ZZY0_9CLOTDUF445domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21985PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	593.79150390625	2	593.790578	1185.5666	1.5634	0.00092831	1.9316	0.001147	3.495	0.0020753	593.7916196577046	147.53	3.1371	147.53	147.21	150.34	0					152	63	5	0	0	0	0.35444	1	17311	17311		56.721	1.9447	1	2457000	+		47971	32428	39782	39807	51462	51462					-0.01875783598848102
REPKQPQPLL	10	Unmodified	_REPKQPQPLL_					0	0	0		ENSG00000136205|ENST00000311160|TNS3;nc|ENSG00000136205|Q68CZ2-2|TNS3	ENSG00000136205|ENST00000311160|TNS3	ENSG00000136205|ENST00000311160|TNS3	MULTI-MSMS	OvCa99_classI_Rep5	1	603.354248046875	2	603.35368	1204.69281	-0.030939	-1.8667E-05	-0.073225	-4.4181E-05	-0.10416	-6.2848E-05	603.3535412290504	56.271	0.94366	56.271	55.845	56.788	0					71	22	4	0	0	0	0.36605	2	4674	4646;4674		72.879	16.158	1	1800000			47972	4471	39783	39808	51463;51464	51464					0.09864767697104071
REPLLIPIL	9	Unmodified	_REPLLIPIL_					0	0	0		ENST00000503939.5_1_5:14741448-14751330:-|nuORF;ENSG00000154122|ENST00000284268|ANKH	ENST00000503939.5_1_5:14741448-14751330:-|nuORF	ENST00000503939.5_1_5:14741448-14751330:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	532.3487548828125	2	532.347335	1062.68012	1.6859	0.00089747	0.45568	0.00024258	2.1416	0.0011401	532.3474341860053	138.18	1.0113	138.18	137.87	138.88	0					50	21	4	0	0	0	0.40667	1	16125	16125		51.335	1.8939	1	792210			47973	5712	39784	39809	51465	51465					0.15128356304853696
REPLVRQVL	9	Unmodified	_REPLVRQVL_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-MSMS	OvCa99_classI_Rep5	1	555.3453979492188	2	555.343115	1108.67168	-0.48526	-0.00026949	0.22149	0.000123	-0.26377	-0.00014649	555.3431208932009	68.211	1.1773	68.211	67.842	69.019	0					78	28	4	0	0	0	0.28934	1	6449	6449		64.207	7.4862	1	7828100			47974	2700	39785	39810	51466	51466					0.12168802388214317
REQAEAEVASL	11	Unmodified	_REQAEAEVASL_					0	0	0		nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-5|TPM3;ENST00000473036.2_1_1:154145382-154155604:-|nuORF	nc|ENSG00000143549|P06753-3|TPM3	nc|ENSG00000143549|P06753-3|TPM3	MULTI-MSMS	OvCa99_classI_Rep5	1	601.805419921875	2	601.804217	1201.59388	0.17966	0.00010812	0.22414	0.00013489	0.4038	0.00024301	601.8042900658104	68.837	0.70327	68.837	68.481	69.184	0					36	16	3	0	0	0	0.1379	1	6514	6514		89.029	0	1	2663200			47975	15075	39786	39811	51467	51467					0.001146999415141181
REQAEAEVASL	11	Unmodified	_REQAEAEVASL_					0	0	0		nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-5|TPM3;ENST00000473036.2_1_1:154145382-154155604:-|nuORF	nc|ENSG00000143549|P06753-3|TPM3	nc|ENSG00000143549|P06753-3|TPM3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	601.804217	1201.59388	0.08405	5.0582E-05	0.20404	0.00012279	0.28809	0.00017337	601.8043856060414	71.428	1.2017	68.921	68.127	69.329	-2.5072	0.094238	-0.00012112	NaN	89.029	32	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47685			47976	15075	39786	39811							0.001146999415141181
REQAEAEVASL	11	Unmodified	_REQAEAEVASL_					0	0	0		nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-5|TPM3;ENST00000473036.2_1_1:154145382-154155604:-|nuORF	nc|ENSG00000143549|P06753-3|TPM3	nc|ENSG00000143549|P06753-3|TPM3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	601.804217	1201.59388	2.2929	0.0013799	1.4871	0.00089492	3.78	0.0022748	601.8040530310735	71.521	0.24952	68.918	68.832	69.081	-2.6023	0.091452	0.0014231	NaN	89.029	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16851			47977	15075	39786	39811							0.001146999415141181
REQAEAEVASL	11	Unmodified	_REQAEAEVASL_					0	0	0		nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-5|TPM3;ENST00000473036.2_1_1:154145382-154155604:-|nuORF	nc|ENSG00000143549|P06753-3|TPM3	nc|ENSG00000143549|P06753-3|TPM3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	601.804217	1201.59388	-0.54563	-0.00032837	0.4033	0.00024271	-0.14233	-8.5657E-05	601.804114305288	72.087	0.82935	68.631	68.412	69.241	-3.4563	-0.19576	0.00011871	NaN	89.029	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	113290			47978	15075	39786	39811							0.001146999415141181
REQDLRLIN	9	Unmodified	_REQDLRLIN_					0	0	0		nc|ENSG00000165288|Q6RI45-2|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;nc|ENSG00000165288|Q6RI45-5|BRWD3;nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;ENST00000473691.1_1_X:79938122-79975072:-|nuORF	nc|ENSG00000165288|Q6RI45-2|BRWD3	nc|ENSG00000165288|Q6RI45-2|BRWD3	MULTI-MSMS	OvCa99_classI_Rep5	1	578.827392578125	2	578.825286	1155.63602	-0.13572	-7.8561E-05	0.0045813	2.6517E-06	-0.13114	-7.5909E-05	578.8252551312614	52.718	0.65239	52.718	52.478	53.131	0					41	14	4	0	0	0	0.21231	1	4163	4163		74.255	0	1	2354900			47979	6548	39787	39812	51468	51468					0.06442720140557867
REQDLRLIN	9	Unmodified	_REQDLRLIN_					0	0	0		nc|ENSG00000165288|Q6RI45-2|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;nc|ENSG00000165288|Q6RI45-5|BRWD3;nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;ENST00000473691.1_1_X:79938122-79975072:-|nuORF	nc|ENSG00000165288|Q6RI45-2|BRWD3	nc|ENSG00000165288|Q6RI45-2|BRWD3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	578.825286	1155.63602	-1.4055	-0.00081353	4.8892	0.00283	3.4837	0.0020165	578.8276787402401	55.824	0.84155	53.021	52.83	53.671	-2.804	0.15141	0.0049925	NaN	74.255	31	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49483			47980	6548	39787	39812							0.06442720140557867
REQEEIVRL	9	Unmodified	_REQEEIVRL_					0	0	0		ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2;nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2	ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant	ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	586.3255615234375	2	586.325119	1170.63569	-1.4399	-0.00084423	0.6248	0.00036634	-0.81506	-0.00047789	586.3254692668081	64.097	0.68966	64.097	63.854	64.544	0					30	16	2	0	0	0	0.034473	1	5802	5802		131.62	48.866	1	3925500			47981	8815	39788	39813	51469	51469					0.057193004207192644
REQEEIVRL	9	Unmodified	_REQEEIVRL_					0	0	0		ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2;nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2	ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant	ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	586.325119	1170.63569	-0.36113	-0.00021174	-6.2573	-0.0036688	-6.6184	-0.0038805	586.3213539276989	66.95	0.54457	64.289	64.099	64.644	-2.661	-0.021634	-0.0055549	NaN	131.62	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46372			47982	8815	39788	39813							0.057193004207192644
REQEEIVRL	9	Unmodified	_REQEEIVRL_					0	0	0		ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2;nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2	ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant	ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	586.325119	1170.63569	-0.52614	-0.00030849	-5.2937	-0.0031038	-5.8198	-0.0034123	586.321998703435	67.236	0.55132	64.349	64.187	64.739	-2.8873	0.038175	-0.0044249	NaN	131.62	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20713			47983	8815	39788	39813							0.057193004207192644
REQEEIVRL	9	Unmodified	_REQEEIVRL_					0	0	0		ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant;nc|ENSG00000198399|Q9NZM3-4|ITSN2;nc|ENSG00000198399|Q9NZM3-3|ITSN2;nc|ENSG00000198399|Q9NZM3-2|ITSN2;ENSG00000198399|ENST00000355123|ITSN2	ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant	ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	586.325119	1170.63569	0.65867	0.00038619	-7.5826	-0.0044459	-6.9239	-0.0040597	586.3204946944311	67.998	0.53377	64.507	64.284	64.818	-3.4902	0.19691	-0.007109	NaN	131.62	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66774			47984	8815	39788	39813							0.057193004207192644
REQFLLGHK	9	Unmodified	_REQFLLGHK_					0	0	0		ENST00000322147.8_2_11:65306929-65307783:-|nuORF;ENST00000529582.5_1_11:65306929-65307783:-|nuORF	ENST00000322147.8_2_11:65306929-65307783:-|nuORF	ENST00000322147.8_2_11:65306929-65307783:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	564.3229370117188	2	564.31964	1126.62473	3.1763	0.0017924	3.3999	0.0019186	6.5762	0.0037111	564.3213788592631	26.344	0.90757	23.635	23.418	24.326	-2.7097					50	25	3	0	0	0	0.6653	1	359	359		24.203	6.8378	1	124260			47985	10382	39789	39814	51470	51470					0.06647942837093979
REQKEGVGVR	10	Unmodified	_REQKEGVGVR_					0	0	0		ENST00000379999.6_1_10:5945096-5948038:+|nuORF	ENST00000379999.6_1_10:5945096-5948038:+|nuORF	ENST00000379999.6_1_10:5945096-5948038:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	579.322998046875	2	579.322911	1156.63127	2.6185	0.0015169	-2.7111	-0.0015706	-0.092569	-5.3628E-05	579.3212562959395	26.202	0.67894	23.493	23.343	24.022	-2.7097					37	15	3	0	0	0	0.58067	1	342	342		44.377	9.2252	1	118080			47986	11139	39790	39815	51471	51471					0.05921835997810376
REQLISKEKII	11	Unmodified	_REQLISKEKII_					0	0	0		nc|ENSG00000133640|Q96JM4-2|LRRIQ1;ENSG00000133640|ENST00000393217|LRRIQ1;LRRIQ1|p.K490Nfs*28|1|0.27|ENSG00000133640|chr12:85056257-85056257|A/-|frameshift_variant;LRRIQ1|p.E1195Kfs*10|1|0.44|ENSG00000133640|chr12:85124094-85124094|A/-|frameshift_variant;ENST00000525971.6_1_12:85431954-85518298:+|nuORF	nc|ENSG00000133640|Q96JM4-2|LRRIQ1	nc|ENSG00000133640|Q96JM4-2|LRRIQ1	MULTI-MSMS	OvCa99_classI_Rep5	1	452.9453430175781	3	452.94516	1355.81365	-0.32673	-0.00014799	0.22282	0.00010092	-0.10391	-4.7066E-05	452.9451704008862	40.135	0.68921	40.135	39.883	40.573	0					30	14	4	0	0	0	0.29489	1	2420	2420		68.786	0	1	685020			47987	4229	39791	39816	51472	51472					0.1499755061988708
REQLWFRM	8	Unmodified	_REQLWFRM_					0	0	0			REV__ENST00000554722.1_1_15:27016972-27018871:-|nuORF	REV__ENST00000554722.1_1_15:27016972-27018871:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	583.3023681640625	2	583.300393	1164.58623	-0.22567	-0.00013163	3.4628	0.0020199	3.2371	0.0018882	583.3016397990983	46.545	0.92364	46.545	46.284	47.208	0					71	20	5	0	0	0	0.65062	1	3295	3295		53.351	5.6941	1	2109800	+		47988	27533	39792	39817	51473	51473					0.010523139309043472
REQPESLRAQ	10	Unmodified	_REQPESLRAQ_					0	0	0		nc|ENSG00000181322|Q86XW9-3|NME9;nc|ENSG00000181322|Q86XW9-2|NME9;ENSG00000181322|ENST00000333911|NME9	nc|ENSG00000181322|Q86XW9-3|NME9	nc|ENSG00000181322|Q86XW9-3|NME9	MULTI-SECPEP	OvCa99_classI_Rep5	1	608.2891845703125	2	607.317825	1212.6211	2.4696	0.0014998	-2.4169	-0.0014678	0.052678	3.1992E-05	607.3166972293521	113.13	0.627	113.13	112.79	113.42	0					22	13	3	0	0	0	0.026867	1	12857	12857		35.152	9.7019	1	162690			47989	7925	39793	39818	51474	51474					0.023292282725833502
REQQKQMRT	9	Unmodified	_REQQKQMRT_					0	0	0			REV__nc|ENSG00000214558|P0DQW0|ZC3H11C	REV__nc|ENSG00000214558|P0DQW0|ZC3H11C	MULTI-MSMS	OvCa9_classI_Rep2	2	602.8135986328125	2	602.814396	1203.61424	-0.88442	-0.00053314	-3.2891	-0.0019827	-4.1735	-0.0025159	602.8123650703909	32.441	0.64286	29.731	29.53	30.173	-2.7097					28	12	3	0	0	0	0.60254	1	1068	1068		18.262	0	1	41577	+		47990	23320	39794	39819	51475	51475					0.020575921203544567
REQRAKLL	8	Unmodified	_REQRAKLL_					0	0	0			REV__ENST00000472942.5_1_9:133972016-133983293:+|nuORF	REV__ENST00000472942.5_1_9:133972016-133983293:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	507.3161926269531	2	507.314358	1012.61416	-0.96299	-0.00048854	3.2619	0.0016548	2.2989	0.0011663	507.3158623915197	117.79	1.8845	116.76	116.44	118.32	-1.0324					99	37	4	0	0	0	0.62474	1	8846	8846		58.782	0.55203	1	576140	+		47991	15583	39795	39820	51476	51476					0.10835960182669169
REQRILQRL	9	Unmodified	_REQRILQRL_					0	0	0		ENST00000339569.9_1_17:38287776-38290619:+|nuORF;nc|ENSG00000188895|Q68DK7-3|MSL1;nc|ENSG00000188895|Q68DK7-2|MSL1;ENSG00000188895|ENST00000398532|MSL1	ENST00000339569.9_1_17:38287776-38290619:+|nuORF	ENST00000339569.9_1_17:38287776-38290619:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3695678710938	2	606.370195	1210.72584	-2.264	-0.0013728	1.1871	0.00071982	-1.0769	-0.00065302	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.68424	1	12565	12565		21.96	1.9631	1	205770			47992	8513	39796	39821	51477	51477					0.12890394539795125
REQVSQDL	8	Unmodified	_REQVSQDL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2;nc|ENSG00000054654|Q8WXH0-7|SYNE2;ENST00000394768.6_2_14:64542710-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-12|SYNE2;nc|ENSG00000054654|Q8WXH0-5|SYNE2;nc|ENSG00000054654|Q8WXH0-6|SYNE2;nc|ENSG00000054654|Q8WXH0-11|SYNE2;nc|ENSG00000054654|Q8WXH0-10|SYNE2;nc|ENSG00000054654|Q8WXH0-4|SYNE2;ENST00000554805.6_2_14:64676062-64692241:+|nuORF;ENST00000555022.5_2_14:64671104-64692241:+|nuORF;nc|ENSG00000054654|Q8WXH0-3|SYNE2;nc|ENSG00000054654|Q8WXH0-13|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MSMS	OvCa99_classI_Rep5	1	487.7470703125	2	487.748713	973.482873	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.67	1	44.67	44.17	45.17	0								0	0	0	0.28835	1	3037	3037		96.19	0.37527	1				47993	1212	39797	39822	51478	51478					-0.0049289497588915765
RERARRRRRSY	11	Unmodified	_RERARRRRRSY_					0	0	0		ENSG00000139767|ENST00000267260|SRRM4	ENSG00000139767|ENST00000267260|SRRM4	ENSG00000139767|ENST00000267260|SRRM4	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.2356567382812	3	521.305078	1560.89341	2.0914	0.0010902	1.2223	0.0006372	3.3137	0.0017274	521.3056154287233	94.321	0.76912	94.321	94.007	94.776	0					46	17	4	0	0	0	0.026444	1	10290	10290		10.998	5.2994	1	1682300			47994	4804	39798	39823	51479	51479					0.135394748571116
REREEREKL	9	Unmodified	_REREEREKL_					0	0	0		ENST00000463912.5_1_7:139083347-139097327:+|nuORF;nc|ENSG00000269955|Q9Y383-3|LUC7L2;nc|ENSG00000269955|Q9Y383-2|LUC7L2;ENSG00000146963|ENST00000354926|LUC7L2;nc|ENSG00000164898|Q96HJ9-2|FMC1	ENST00000463912.5_1_7:139083347-139097327:+|nuORF;REV__nc|ENSG00000107581|Q14152-2|EIF3A	ENST00000463912.5_1_7:139083347-139097327:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	622.8388061523438	2	622.838925	1243.6633	-0.89192	-0.00055552	0.90134	0.00056139	0.0094249	5.8702E-06	622.8394405183653	25.618	0.54994	25.618	25.442	25.992	0					27	10	4	0	0	0	0.35521	1	584	584		49.536	10.283	1	737010			47995	5321;17852	39799	39824	51480	51480					0.051212036809374695
REREGVITI	9	Unmodified	_REREGVITI_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.81005859375	2	536.809105	1071.60366	-0.85455	-0.00045873	0.26238	0.00014085	-0.59217	-0.00031788	536.8091929671385	66.71	1.4792	63.22	62.805	64.284	-3.4902					90	29	6	0	0	0	0.37135	1	4867	4867		54.776	5.3348	1	2051100			47996	4140	39800	39825	51481	51481					0.07071932737562747
REREMELRR	9	Unmodified	_REREMELRR_					0	0	0		ENST00000532517.5_1_11:118498004-118527530:+|nuORF;nc|ENSG00000019144|Q86UU1-2|PHLDB1;ENSG00000019144|ENST00000600882|PHLDB1;ENST00000530994.5_1_11:118515264-118527530:+|nuORF;ENST00000524713.5_1_11:118512334-118527530:+|nuORF	ENST00000532517.5_1_11:118498004-118527530:+|nuORF	ENST00000532517.5_1_11:118498004-118527530:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	425.5631103515625	3	425.563055	1273.66734	0.071517	3.0435E-05	-0.29909	-0.00012728	-0.22757	-9.6845E-05	425.56289867461925	30.261	0.64557	30.261	30.036	30.682	0					27	12	3	0	0	0	0.33652	1	1151	1151		56.434	0	1	550370			47997	1016	39801	39826	51482	51482					0.04144969902995399
RERERDGR	8	Unmodified	_RERERDGR_					0	0	0			REV__ENSG00000109606|ENST00000336812|DHX15	REV__ENSG00000109606|ENST00000336812|DHX15	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.8076171875	2	537.281577	1072.5486	-0.14504	-7.7928E-05	-1.1025	-0.00059236	-1.2476	-0.00067029	537.2807659863039	66.367	1.0432	63.671	63.17	64.213	-2.6958					44	20	4	0	0	0	0.028476	1	5091	5091		40.778	0	1	45658	+		47998	17936	39802	39827	51483	51483					0.015229389896603607
RERFCNRER	9	Unmodified	_RERFCNRER_					0	0	0		ENSG00000047621|ENST00000261250|C12orf4;ENST00000535030.1_1_12:4643313-4645372:-|nuORF	ENSG00000047621|ENST00000261250|C12orf4	ENSG00000047621|ENST00000261250|C12orf4	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.32177734375	2	633.317637	1264.62072	0.018717	1.1854E-05	4.1478	0.0026269	4.1666	0.0026388	633.319874027502	21.211	0.87702	19.873	19.646	20.523	-1.3386					35	17	3	0	0	0	0.64127	1	159	159		27.047	3.5246	1	43405			47999	1148	39803	39828	51484	51484					-0.001004699282702859
RERGREWR	8	Unmodified	_RERGREWR_					0	0	0			REV__ENST00000506216.5_1_4:5749932-5890196:-|nuORF	REV__ENST00000506216.5_1_4:5749932-5890196:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	572.3053588867188	2	572.807762	1143.60097	-1.0075	-0.00057708	-1.0176	-0.0005829	-2.0251	-0.00116	572.8071818803521	49.763	1.1266	49.763	49.206	50.332	0					48	21	3	0	0	0	0.64371	1	3721	3721		54.776	3.4409	1	2788700	+		48000	26885	39804	39829	51485	51485					0.034915221232722615
RERHFKLN	8	Unmodified	_RERHFKLN_					0	0	0		tr|A0A553SQQ9|A0A553SQQ9_NIACIHNHnucleasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07125PE=4SV=1	tr|A0A553SQQ9|A0A553SQQ9_NIACIHNHnucleasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07125PE=4SV=1	tr|A0A553SQQ9|A0A553SQQ9_NIACIHNHnucleasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07125PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.7959594726562	2	550.309606	1098.60466	-0.03262	-1.7951E-05	3.8859	0.0021385	3.8533	0.0021205	550.3129187025874	90.576	0.96968	88.001	87.551	88.52	-2.575					53	18	5	0	0	0	0.028476	1	7778	7778		16.473	0	1	76242			48001	34186	39805	39830	51486	51486					0.059301918971414125
RERIDELER	9	Unmodified	_RERIDELER_					0	0	0		IQSEC3|p.T916Sfs*21|1|0.05|ENSG00000120645|chr12:165470-165471|-/GTGTGTG|frameshift_variant;IQSEC3|p.Y917Hfs*38|1|0.04|ENSG00000120645|chr12:165471-165472|-/ACATATATGTATATCTGTACCTGTAT|frameshift_variant;ENSG00000120645|ENST00000538872|IQSEC3	IQSEC3|p.T916Sfs*21|1|0.05|ENSG00000120645|chr12:165470-165471|-/GTGTGTG|frameshift_variant	IQSEC3|p.T916Sfs*21|1|0.05|ENSG00000120645|chr12:165470-165471|-/GTGTGTG|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	405.88629150390625	3	405.886192	1214.63675	0.98092	0.00039814	-1.2077	-0.00049021	-0.22682	-9.2064E-05	405.8857265417567	35.73	0.92138	35.73	35.566	36.487	0					34	19	3	0	0	0	0.52825	1	1830	1830		39.873	2.365	1	833260			48002	3437	39806	39831	51487	51487					0.038015147896203416
RERIRTQLKKM	11	Unmodified	_RERIRTQLKKM_					0	0	0		tr|A0A7D6VMV7|A0A7D6VMV7_9CLOTValine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=valSPE=3SV=1	tr|A0A7D6VMV7|A0A7D6VMV7_9CLOTValine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=valSPE=3SV=1	tr|A0A7D6VMV7|A0A7D6VMV7_9CLOTValine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=valSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.9580078125	3	486.961038	1457.86129	-7.2825	-0.0035463	2.9605	0.0014416	-4.322	-0.0021046	486.9623381995862	161.08	3.4384	159.71	158.52	161.96	-1.3692					219	70	4	0	0	0	0.72538	1	14058	14058		10.587	0.94066	1	133400			48003	34671	39807	39832	51488	51488					0.1506692633909097
RERKDRVALI	10	Unmodified	_RERKDRVALI_					0	0	0			REV__BPIFA1|p.Q170R|1|0.05|ENSG00000198183|chr20:33240313-33240313|A/G|missense_variant	REV__BPIFA1|p.Q170R|1|0.05|ENSG00000198183|chr20:33240313-33240313|A/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	628.3826293945312	2	628.383303	1254.75205	-3.3027	-0.0020754	1.8151	0.0011406	-1.4876	-0.00093479	628.3842124119614	147.07	3.8366	146.85	145.03	148.87	-0.22696					134	76	2	0	0	0	0.7759	1	14874	14874		21.96	4.5949	1	131170	+		48004	15707	39808	39833	51489	51489					0.1348666371127365
RERLETANKQ	10	Unmodified	_RERLETANKQ_					0	0	0		ENSG00000126016|ENST00000371959|AMOT;nc|ENSG00000126016|Q4VCS5-2|AMOT	ENSG00000126016|ENST00000371959|AMOT	ENSG00000126016|ENST00000371959|AMOT	MULTI-MSMS	OvCa99_classI_Rep5	1	415.5616149902344	3	415.561709	1243.6633	0.021129	8.7804E-06	-0.24798	-0.00010305	-0.22685	-9.4269E-05	415.56164414018417	25.619	0.69915	25.619	25.442	26.142	0					42	13	4	0	0	0	0.58667	1	605	605		43.651	4.8972	1	1412500			48005	3763	39809	39834	51490	51490					0.051212036809374695
RERNRLITHLL	11	Unmodified	_RERNRLITHLL_					0	0	0		ENSG00000181215|ENST00000531445|C4orf50	ENSG00000181215|ENST00000531445|C4orf50	ENSG00000181215|ENST00000531445|C4orf50	MULTI-SECPEP	OvCa9_classI_Rep4_	4	474.22564697265625	3	474.288031	1419.84226	-0.10252	-4.8624E-05	1.6317	0.00077391	1.5292	0.00072529	474.2873020607861	87.35	0.30208	84.723	84.599	84.901	-2.6269					6	5	2	0	0	0	0.026174	1	7413	7413		22.562	16.863	1	10080			48006	7922	39810	39835	51491	51491					0.14913713039709364
RERRERRERME	11	Unmodified	_RERRERRERME_					0	0	0		ENST00000551189.1_1_12:49231126-49231468:-|nuORF;ENST00000547165.5_1_12:49231126-49231803:-|nuORF;DDX23|p.K674Rfs*106|1|0.2|ENSG00000174243|chr12:48832123-48832123|C/-|frameshift_variant;ENSG00000174243|ENST00000308025|DDX23	ENST00000551189.1_1_12:49231126-49231468:-|nuORF	ENST00000551189.1_1_12:49231126-49231468:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.7638549804688	3	534.949972	1601.82809	-1.3832	-0.00073993	1.4696	0.00078619	0.086479	4.6262E-05	534.9494053134663	79.828	0.53203	77.077	76.844	77.376	-2.7514					25	10	5	0	0	0	0.026497	1	6467	6467		9.6461	0	1	48821			48007	719	39811	39836	51492	51492					0.0512469254908865
RERRERRERME	11	Unmodified	_RERRERRERME_					0	0	0		ENST00000551189.1_1_12:49231126-49231468:-|nuORF;ENST00000547165.5_1_12:49231126-49231803:-|nuORF;DDX23|p.K674Rfs*106|1|0.2|ENSG00000174243|chr12:48832123-48832123|C/-|frameshift_variant;ENSG00000174243|ENST00000308025|DDX23	ENST00000551189.1_1_12:49231126-49231468:-|nuORF	ENST00000551189.1_1_12:49231126-49231468:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	534.949972	1601.82809	-0.78376	-0.00041927	-0.5405	-0.00028914	-1.3243	-0.00070842	535.2844649578102	78.84	0.86686	77.1	76.855	77.722	-1.7398	-0.061379	0.0014927	NaN	9.6461	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30879			48008	719	39811	39836							0.0512469254908865
RERRERRERME	11	Unmodified	_RERRERRERME_					0	0	0		ENST00000551189.1_1_12:49231126-49231468:-|nuORF;ENST00000547165.5_1_12:49231126-49231803:-|nuORF;DDX23|p.K674Rfs*106|1|0.2|ENSG00000174243|chr12:48832123-48832123|C/-|frameshift_variant;ENSG00000174243|ENST00000308025|DDX23	ENST00000551189.1_1_12:49231126-49231468:-|nuORF	ENST00000551189.1_1_12:49231126-49231468:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		3	534.949972	1601.82809	1.122	0.0006002	-3.0686	-0.0016415	-1.9466	-0.0010413	534.9483914147685	79.648	0.70651	77.308	77.103	77.81	-2.3399	0.14627	-0.0025645	NaN	9.6461	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48516			48009	719	39811	39836							0.0512469254908865
RERRRQPLLFP	11	Unmodified	_RERRRQPLLFP_					0	0	0		ENST00000284503.6_1_8:11627404-11629042:+|nuORF	ENST00000284503.6_1_8:11627404-11629042:+|nuORF	ENST00000284503.6_1_8:11627404-11629042:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	489.95941162109375	3	489.960026	1466.85825	1.2339	0.00060458	-2.8738	-0.0014081	-1.6399	-0.00080347	489.9585825409476	30.218	0.74082	27.508	27.36	28.1	-2.7097					36	14	3	0	0	0	0.72545	1	804	804		9.6461	2.6274	1	68684			48010	10069	39812	39837	51493	51493					0.14349419276595654
RERRTLVQ	8	Unmodified	_RERRTLVQ_					0	0	0			REV__ENSG00000165046|ENST00000379957|LETM2	REV__ENSG00000165046|ENST00000379957|LETM2	MULTI-MSMS	OvCa99_classI_Rep5	1	529.32080078125	2	529.314889	1056.61522	-0.30508	-0.00016148	0.10469	5.5413E-05	-0.20039	-0.00010607	529.315327513534	33.305	0.5933	33.305	33.087	33.681	0					19	11	2	0	0	0	0.70469	1	1520	1520		42.396	4.5846	1	509640	+		48011	21050	39813	39838	51494	51494					0.08918174551558877
RERVLELAR	9	Unmodified	_RERVLELAR_					0	0	0		ENSG00000168763|ENST00000305510|CNNM3;nc|ENSG00000168763|Q8NE01-2|CNNM3;nc|ENSG00000168763|Q8NE01-3|CNNM3	ENSG00000168763|ENST00000305510|CNNM3	ENSG00000168763|ENST00000305510|CNNM3	MULTI-MSMS	OvCa9_classI_Rep2	2	571.3431396484375	2	571.343646	1140.67274	-0.014102	-8.0572E-06	-0.68762	-0.00039287	-0.70172	-0.00040093	571.3430044341536	42.894	1.1371	40.184	39.818	40.955	-2.7097					49	22	3	0	0	0	0.44568	1	2345	2345		47.657	4.7931	1	139130			48012	6938	39814	39839	51495	51495					0.10803016757108708
RESDLSSKTQL	11	Unmodified	_RESDLSSKTQL_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1;ENST00000555164.2_1_14:56119589-56122865:+|nuORF	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MSMS	OvCa99_classI_Rep5	1	632.3311157226562	2	632.330598	1262.64664	0.13711	8.6698E-05	-0.4442	-0.00028088	-0.30709	-0.00019418	632.3302271434452	47.403	0.5158	47.403	47.208	47.724	0					31	11	4	0	0	0	0.063347	1	3409	3409		107.45	14.312	1	1097300			48013	3800	39815	39840	51496	51496					0.025826580043485592
RESEAGVGL	9	Unmodified	_RESEAGVGL_					0	0	0		ENSG00000221963|ENST00000409652|APOL6	ENSG00000221963|ENST00000409652|APOL6	ENSG00000221963|ENST00000409652|APOL6	MULTI-MSMS	OvCa99_classI_Rep5	1	459.2392272949219	2	459.237981	916.461409	-0.30006	-0.0001378	0.59335	0.00027249	0.29329	0.00013469	459.23813012594564	54.028	1.1124	54.028	53.692	54.805	0					68	26	6	0	0	0	0.16562	1	4326	4326		82.241	1.7859	1	5895500			48014	9240	39816	39841	51497	51497					-0.0001628000460414114
RESEAGVGL	9	Unmodified	_RESEAGVGL_					0	0	0		ENSG00000221963|ENST00000409652|APOL6	ENSG00000221963|ENST00000409652|APOL6	ENSG00000221963|ENST00000409652|APOL6	MULTI-MSMS	OvCa9_classI_Rep4_	4	459.23858642578125	2	459.237981	916.461409	-0.37913	-0.00017411	0.30477	0.00013996	-0.074358	-3.4148E-05	459.2380255214114	58.571	1.1501	55.179	54.852	56.002	-3.392					49	22	3	0	0	0	0.38969	1	3868	3868		52.937	1.6012	1	339810			48015	9240	39816	39841	51498	51498					-0.0001628000460414114
RESEAGVGL	9	Unmodified	_RESEAGVGL_					0	0	0		ENSG00000221963|ENST00000409652|APOL6	ENSG00000221963|ENST00000409652|APOL6	ENSG00000221963|ENST00000409652|APOL6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	459.237981	916.461409	-0.048085	-2.2083E-05	0.37493	0.00017218	0.32685	0.0001501	459.2380272633613	58.241	0.95168	55.449	55.072	56.024	-2.792	0.13521	3.4945E-05	NaN	52.937	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63634			48016	9240	39816	39841							-0.0001628000460414114
RESHQKATEEL	11	Unmodified	_RESHQKATEEL_					0	0	0		ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENSG00000183486|ENST00000330714|MX2;ENST00000493753.1_1_21:42769576-42771509:+|nuORF	ENST00000482953.5_1_21:42762449-42780157:+|nuORF	ENST00000482953.5_1_21:42762449-42780157:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	443.22491455078125	3	443.224874	1326.65279	0.65798	0.00029163	-0.91479	-0.00040546	-0.25681	-0.00011382	443.224442577353	29.643	0.7998	29.643	29.436	30.236	0					25	15	2	0	0	0	0.5614	1	1074	1074		48.188	10.68	1	444900			48017	8078	39817	39842	51499	51499					0.0025317623587852722
RESIIRQLA	9	Unmodified	_RESIIRQLA_					0	0	0			REV__ENSG00000162592|ENST00000294600|CCDC27	REV__ENSG00000162592|ENST00000294600|CCDC27	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.323486328125	2	543.324922	1084.63529	-0.51967	-0.00028235	-0.45654	-0.00024805	-0.97621	-0.0005304	543.3244569383747	75.184	1.4039	71.953	71.192	72.596	-3.2308					62	28	3	0	0	0	0.42676	1	5914	5914		49.442	5.0644	1	300630	+		48018	20749	39818	39843	51500	51500					0.09635925491511443
RESIIRQLA	9	Unmodified	_RESIIRQLA_					0	0	0			REV__ENSG00000162592|ENST00000294600|CCDC27	REV__ENSG00000162592|ENST00000294600|CCDC27	MULTI-MATCH	OvCa9_classI_Rep2	2		2	543.324922	1084.63529	-0.90015	-0.00048907	0.32225	0.00017509	-0.5779	-0.00031399	543.3249278725093	74.087	1.5201	72.116	71.378	72.898	-1.9711	0.081464	0.00023049	NaN	49.442	73	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198920	+		48019	20749	39818	39843							0.09635925491511443
RESIKLVSI	9	Unmodified	_RESIKLVSI_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.H2029Qfs*32|1|0.9|ENSG00000196924|chrX:154353130-154353140|TGCTGGCCACG/-|frameshift_variant;FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant;FLNB|p.S2513Rfs*5|1|0.04|ENSG00000136068|chr3:58169710-58169711|-/GATTC|frameshift_variant;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;FLNB|p.T1593Ifs*40|1|0.08|ENSG00000136068|chr3:58136084-58136085|-/TCTATCAAGTC|frameshift_variant;FLNB|p.L1100Ffs*93|1|0.04|ENSG00000136068|chr3:58123263-58123263|C/-|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA;FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OvCa9_classI_Rep2	2	522.823974609375	2	522.824224	1043.63389	0.6555	0.00034271	-1.635	-0.00085481	-0.97949	-0.0005121	522.8233249021611	80.518	1.853	78.823	78.124	79.977	-1.6951					130	36	6	0	0	0	0.2784	1	6797	6797		65.465	1.2581	1	1770100			48020	8659;4455	39819	39844	51501	51501					0.1138229140274234
RESIKLVSI	9	Unmodified	_RESIKLVSI_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.H2029Qfs*32|1|0.9|ENSG00000196924|chrX:154353130-154353140|TGCTGGCCACG/-|frameshift_variant;FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant;FLNB|p.S2513Rfs*5|1|0.04|ENSG00000136068|chr3:58169710-58169711|-/GATTC|frameshift_variant;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;FLNB|p.T1593Ifs*40|1|0.08|ENSG00000136068|chr3:58136084-58136085|-/TCTATCAAGTC|frameshift_variant;FLNB|p.L1100Ffs*93|1|0.04|ENSG00000136068|chr3:58123263-58123263|C/-|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA;FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OvCa9_classI_Rep3	3	522.8253784179688	2	522.824224	1043.63389	-0.61715	-0.00032266	-0.12179	-6.3677E-05	-0.73894	-0.00038634	522.8241473129543	81.355	1.6752	79.033	78.337	80.012	-2.3226					150	32	6	0	0	0	0.14855	3	4519	4501;4508;4519		85.161	15.533	1	2046900			48021	8659;4455	39819	39844	51502;51503;51504	51504					0.1138229140274234
RESIKLVSI	9	Unmodified	_RESIKLVSI_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.H2029Qfs*32|1|0.9|ENSG00000196924|chrX:154353130-154353140|TGCTGGCCACG/-|frameshift_variant;FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant;FLNB|p.S2513Rfs*5|1|0.04|ENSG00000136068|chr3:58169710-58169711|-/GATTC|frameshift_variant;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;FLNB|p.T1593Ifs*40|1|0.08|ENSG00000136068|chr3:58136084-58136085|-/TCTATCAAGTC|frameshift_variant;FLNB|p.L1100Ffs*93|1|0.04|ENSG00000136068|chr3:58123263-58123263|C/-|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA;FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.8255004882812	2	522.824224	1043.63389	-1.2156	-0.00063554	0.7068	0.00036953	-0.50879	-0.00026601	522.824557169564	81.502	1.6045	78.791	78.199	79.804	-2.7106					115	32	5	0	0	0	0.2784	3	6697	6697;6734;6748		65.465	6.8155	1	2410100			48022	8659;4455	39819	39844	51505;51506;51507	51505					0.1138229140274234
RESNEVVHL	9	Unmodified	_RESNEVVHL_					0	0	0		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-MSMS	OvCa99_classI_Rep5	1	541.7835083007812	2	541.783087	1081.55162	-0.57282	-0.00031034	-0.27231	-0.00014753	-0.84513	-0.00045788	541.7830601970278	52.105	1.2875	52.105	51.669	52.956	0					80	29	4	0	0	0	0.11471	2	4072	4050;4072		93.195	5.499	1	8821100			48023	4496	39820	39845	51508;51509	51509					0.014107693237974672
RESRSQEVLLA	11	Unmodified	_RESRSQEVLLA_					0	0	0			REV__XPO1-USP34|3|fusion	REV__XPO1-USP34|3|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	644.3529663085938	2	644.354408	1286.69426	-0.32753	-0.00021105	0.57559	0.00037088	0.24806	0.00015984	644.3547215589697	25.016	0.40409	25.016	24.838	25.242	0					15	7	3	0	0	0	0.69808	1	517	517		30.318	0	1	97286	+		48024	32759	39821	39846	51510	51510					0.0623835699520896
RESSMVTLTF	10	Oxidation (M)	_RESSM(Oxidation (M))VTLTF_		RESSM(1)VTLTF		RESSM(85)VTLTF	0	0	1			REV__ENSG00000181408|ENST00000313135|UTS2R	REV__ENSG00000181408|ENST00000313135|UTS2R	MULTI-MSMS	OvCa99_classI_Rep5	1	593.7923583984375	2	593.792263	1185.56997	1.5634	0.00092831	-0.90676	-0.00053843	0.6566	0.00038989	593.7916196577046	147.53	3.1371	147.53	147.21	150.34	0					152	63	5	0	0	0	0.26424	1	17286	17286		85.161	16.315	1	2457000	+		48025	22234	39822	39847	51511	51511		516			-0.01538856816500811
RESTGAQVQV	10	Unmodified	_RESTGAQVQV_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENSG00000183570|ENST00000681687|PCBP3;ENST00000468429.5_1_21:47321003-47359956:+|nuORF;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;PCBP2-PFDN5|1|fusion;PCBP2-PFDN5|2|fusion;PCBP2-AMHR2|6|fusion;PCBP2-AMHR2|4|fusion;PCBP2-AMHR2|7|fusion;PCBP2-AMHR2|5|fusion;PCBP2-AMHR2|1|fusion;PCBP2-AMHR2|3|fusion;PCBP2-AMHR2|2|fusion	ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000197111|Q15366-7|PCBP2;PCBP2-AMHR2|6|fusion	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.7796020507812	2	537.780544	1073.54654	-1.8745	-0.0010081	1.6897	0.00090867	-0.18487	-9.9418E-05	537.7813144943051	50.716	1.5204	47.543	47.256	48.776	-3.1734					82	29	4	0	0	0	0.23547	3	2935	2927;2935;2949		89.029	21.535	1	1330600			48026	7018;8677;15477	39823	39848	51512;51513;51514	51513					0.01270465461175263
RETDEETKQIL	11	Unmodified	_RETDEETKQIL_					0	0	0		ENSG00000168495|ENST00000306433|POLR3D	ENSG00000168495|ENST00000306433|POLR3D	ENSG00000168495|ENST00000306433|POLR3D	MULTI-MSMS	OvCa99_classI_Rep5	1	454.5687255859375	3	454.568418	1360.68342	0.30866	0.00014031	0.27204	0.00012366	0.5807	0.00026397	454.56851937917605	52.855	0.52106	52.855	52.61	53.131	0					23	11	3	0	0	0	0.66269	1	4166	4166		38.96	0.24552	1	937170			48027	6913	39824	39849	51515	51515					0.017509098302298298
RETGRREDI	9	Unmodified	_RETGRREDI_					0	0	0		nc|ENSG00000051009|Q8N612-2|FHIP1B	nc|ENSG00000051009|Q8N612-2|FHIP1B	nc|ENSG00000051009|Q8N612-2|FHIP1B	MULTI-MSMS	OvCa9_classI_Rep2	2	566.2977294921875	2	566.296893	1130.57923	-0.94413	-0.00053466	2.1791	0.001234	1.235	0.00069938	566.2979066209101	99.965	2.3305	99.134	98.418	100.75	-0.83051					77	46	4	0	0	0	0.44568	1	9179	9179		47.657	1.6851	1	343040			48028	14874	39825	39850	51516	51516					0.019166725840250365
RETLLRLQLE	10	Unmodified	_RETLLRLQLE_					0	0	0		ENSG00000095066|ENST00000397668|HOOK2;nc|ENSG00000095066|Q96ED9-2|HOOK2;ENST00000589398.1_1_19:12876641-12878865:-|nuORF	ENSG00000095066|ENST00000397668|HOOK2	ENSG00000095066|ENST00000397668|HOOK2	MULTI-MSMS	OvCa99_classI_Rep5	1	424.5888671875	3	424.254105	1269.74048	0.23762	0.00010081	-2.1761	-0.00092324	-1.9385	-0.00082243	424.25320107299643	21.851	0.24108	21.851	21.723	21.964	0					16	8	3	0	0	0	0.75313	1	155	155		17.833	4.8757	1	31120			48029	1920	39826	39851	51517	51517					0.1164042189727752
RETNLDSLPL	10	Unmodified	_RETNLDSLPL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|2|fusion;PPFIBP1-VIM|1|fusion	ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|1|fusion	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa9_classI_Rep2	2	579.3098754882812	2	579.311677	1156.6088	-0.99433	-0.00057603	0.45682	0.00026464	-0.53751	-0.00031139	579.3119014879636	98.774	1.8386	97.881	97.41	99.248	-0.89306					101	36	5	0	0	0	0.44722	2	9005	9005;9013		61.691	3.4614	1	886160			48030	1049;15514	39827	39852	51518;51519	51518					0.03676191809518059
RETSMVHEL	9	Unmodified	_RETSMVHEL_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1;ENST00000498837.1_1_3:127786720-127788502:+|nuORF	ENSG00000058262|ENST00000243253|SEC61A1	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OvCa99_classI_Rep5	1	551.2728271484375	2	551.271498	1100.52844	-0.46106	-0.00025417	-0.24334	-0.00013415	-0.7044	-0.00038832	551.2714059559593	50.97	1.7528	50.97	50.594	52.347	0					106	40	5	0	0	0	0.14998	2	3936	3910;3936		84.916	8.1414	1	27099000			48031	1242	39828	39853	51520;51521	51521					-0.017799927851683606
RETVSEESNVL	11	Unmodified	_RETVSEESNVL_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;GNB2-EEF2|1|fusion	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MSMS	OvCa99_classI_Rep5	1	631.8164672851562	2	631.814781	1261.61501	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.71	1	64.71	64.21	65.21	0								0	0	0	0.064413	1	5898	5898		74.165	10.631	1				48032	6826	39829	39854	51522	51522					-0.005333347496161878
REVAALAREV	10	Unmodified	_REVAALAREV_					0	0	0			REV__ENSG00000187513|ENST00000342280|GJA4	REV__ENSG00000187513|ENST00000342280|GJA4	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.3229370117188	2	557.32238	1112.63021	0.82365	0.00045904	-1.1173	-0.00062269	-0.29363	-0.00016365	557.3216917418437	90.3	1.43	87.725	87.399	88.829	-2.575					50	27	2	0	0	0	0.67987	1	7780	7780		32.751	2.4328	1	261510	+		48033	22643	39830	39855	51523	51523					0.07839621628886562
REVAALAREV	10	Unmodified	_REVAALAREV_					0	0	0			REV__ENSG00000187513|ENST00000342280|GJA4	REV__ENSG00000187513|ENST00000342280|GJA4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	557.32238	1112.63021	2.2904	0.0012765	-2.4333	-0.0013561	-0.14291	-7.9647E-05	557.3207870269374	88.812	1.3801	87.445	87.037	88.417	-1.3676	-0.18558	-0.0018155	NaN	32.751	69	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	270730	+		48034	22643	39830	39855							0.07839621628886562
REVAALAREV	10	Unmodified	_REVAALAREV_					0	0	0			REV__ENSG00000187513|ENST00000342280|GJA4	REV__ENSG00000187513|ENST00000342280|GJA4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	557.32238	1112.63021	-0.96138	-0.0005358	0.54253	0.00030237	-0.41884	-0.00023343	557.3226081639364	89.802	1.5355	87.721	87.388	88.923	-2.0805	0.091074	0.0015015	NaN	32.751	52	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	328980	+		48035	22643	39830	39855							0.07839621628886562
REVAALAREV	10	Unmodified	_REVAALAREV_					0	0	0			REV__ENSG00000187513|ENST00000342280|GJA4	REV__ENSG00000187513|ENST00000342280|GJA4	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	557.32238	1112.63021	0.82365	0.00045904	-1.1173	-0.00062269	-0.29363	-0.00016365	557.3216917418437	90.3	1.43	87.725	87.399	88.829	-2.575	0.094502	-0.00034865	NaN	32.751	50	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261510	+		48036	22643	39830	39855							0.07839621628886562
REVAGHTEQL	10	Unmodified	_REVAGHTEQL_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;ENST00000468880.1_1_17:39680334-39681232:-|nuORF;ENST00000471565.2_1_17:39680334-39680852:-|nuORF	CON__P08727	CON__P08727	MULTI-MSMS	OvCa99_classI_Rep5	1	570.294677734375	2	570.293819	1138.57309	-0.59326	-0.00033833	0.00034172	1.9488E-07	-0.59292	-0.00033814	570.2938199504403	39.442	0.95717	39.442	39.196	40.154	0					45	21	4	0	0	0	0.25842	2	2312	2312;2339		85.862	25.744	1	5435300		+	48037	625	39831	39856	51524;51525	51524					0.009341543525124507
REVAGHTEQL	10	Unmodified	_REVAGHTEQL_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;ENST00000468880.1_1_17:39680334-39681232:-|nuORF;ENST00000471565.2_1_17:39680334-39680852:-|nuORF	CON__P08727	CON__P08727	MULTI-MSMS	OvCa9_classI_Rep2	2	570.293701171875	2	570.293819	1138.57309	-0.33718	-0.00019229	0.063857	3.6417E-05	-0.27332	-0.00015587	570.2937901933576	44.237	1.8459	41.528	41.253	43.099	-2.7097					100	36	5	0	0	0	0.065922	10	2524	2495;2500;2506;2512;2518;2524;2530;2537;2543;2551		123.21	67.704	1	1471100		+	48038	625	39831	39856	51526;51527;51528;51529;51530;51531;51532;51533;51534;51535	51531					0.009341543525124507
REVAGHTEQL	10	Unmodified	_REVAGHTEQL_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;ENST00000468880.1_1_17:39680334-39681232:-|nuORF;ENST00000471565.2_1_17:39680334-39680852:-|nuORF	CON__P08727	CON__P08727	MULTI-MSMS	OvCa9_classI_Rep4_	4	570.294921875	2	570.293819	1138.57309	-0.9328	-0.00053197	0.030276	1.7266E-05	-0.90252	-0.0005147	570.293881991643	44.493	2.8923	41.455	41.207	44.099	-3.0385					126	55	4	0	0	0	0.0016265	7	2209	2199;2209;2221;2234;2247;2259;2272		173.24	88.32	1	6758700		+	48039	625	39831	39856	51536;51537;51538;51539;51540;51541;51542	51537					0.009341543525124507
REVEARYAL	9	Unmodified	_REVEARYAL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa99_classI_Rep5	1	553.8024291992188	2	553.80128	1105.58801	-0.4288	-0.00023747	-0.61069	-0.0003382	-1.0395	-0.00057567	553.8011699800342	55.247	1.2405	55.247	54.98	56.22	0					85	29	6	0	0	0	0.1243	1	4498	4498		90.601	16.346	1	15234000			48040	2808	39832	39857	51543	51543					0.03943646220500341
REVEARYAL	9	Unmodified	_REVEARYAL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8007202148438	2	553.80128	1105.58801	0.29019	0.00016071	-0.74142	-0.0004106	-0.45124	-0.0002499	553.800853090458	59.574	2.3577	56.794	56.241	58.599	-2.7801					121	44	5	0	0	0	0.13504	6	4341	4331;4336;4341;4353;4359;4377		87.696	18.069	1	1718100			48041	2808	39832	39857	51544;51545;51546;51547;51548;51549	51546					0.03943646220500341
REVEARYAL	9	Unmodified	_REVEARYAL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8023071289062	2	553.80128	1105.58801	0.49336	0.00027322	-1.3777	-0.00076298	-0.88435	-0.00048976	553.8005670666216	60.304	2.535	56.874	56.504	59.039	-3.43					130	51	5	0	0	0	0.16264	6	4081	4059;4069;4081;4105;4117;4130		82.75	17.232	1	5110100			48042	2808	39832	39857	51550;51551;51552;51553;51554;51555	51552					0.03943646220500341
REVEELRSSL	10	Unmodified	_REVEELRSSL_					0	0	0		RMDN3|p.D401Pfs*16|1|0.2|ENSG00000137824|chr15:40737651-40737652|-/AAGTCATGAAGGCCAGTGAAACGTGG|frameshift_variant;RMDN3|p.S425Lfs*16|1|0.11|ENSG00000137824|chr15:40737292-40737293|-/GAGACAAAGAACAAATCTAGGGCTCA|frameshift_variant;ENSG00000137824|ENST00000338376|RMDN3	RMDN3|p.D401Pfs*16|1|0.2|ENSG00000137824|chr15:40737651-40737652|-/AAGTCATGAAGGCCAGTGAAACGTGG|frameshift_variant	RMDN3|p.D401Pfs*16|1|0.2|ENSG00000137824|chr15:40737651-40737652|-/AAGTCATGAAGGCCAGTGAAACGTGG|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	609.3294067382812	2	609.327859	1216.64116	0.17169	0.00010462	0.11855	7.2234E-05	0.29024	0.00017685	609.3277861464744	60.797	0.73061	60.797	60.559	61.289	0					34	16	3	0	0	0	0.28355	1	5321	5321		82.831	22.712	1	2333500			48043	4626	39833	39858	51556	51556					0.04150979212522543
REVEKAKRAL	10	Unmodified	_REVEKAKRAL_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MSMS	OvCa9_classI_Rep4_	4	400.57891845703125	3	400.578811	1198.7146	1.9518	0.00078186	-1.639	-0.00065656	0.3128	0.0001253	400.57806803524926	20.369	1.1156	19.03	18.851	19.966	-1.3386					35	22	2	0	0	0	0.68624	1	40	40		32.034	0.39986	1	160930			48044	1134	39834	39859	51557	51557					0.12319572445653648
REVEVEVESM	10	Unmodified	_REVEVEVESM_					0	0	0		ENSG00000197157|ENST00000354725|SND1;ZFR-SND1|1|fusion	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	OvCa99_classI_Rep5	1	603.7889404296875	2	603.787178	1205.5598	2.2938	0.001385	0.22643	0.00013672	2.5202	0.0015217	603.7871644625965	76.762	0.89364	76.762	76.443	77.336	0					48	21	3	0	0	0	0.37132	1	7722	7722		72.243	22.707	1	3681200			48045	8684	39835	39860	51558	51558					-0.03475464541747897
REVLEKQPVL	10	Unmodified	_REVLEKQPVL_					0	0	0		ENST00000493673.1_1_1:151373717-151374107:+|nuORF;ENST00000474100.1_1_1:151372658-151373852:+|nuORF;ENSG00000159377|ENST00000290541|PSMB4	ENST00000493673.1_1_1:151373717-151374107:+|nuORF	ENST00000493673.1_1_1:151373717-151374107:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	605.8626098632812	2	605.861338	1209.70812	-1.1992	-0.00072656	0.55864	0.00033846	-0.64057	-0.0003881	605.8616236115041	63.96	0.81192	63.96	63.732	64.544	0					55	19	4	0	0	0	0.34306	1	5784	5784		54.722	8.2656	1	5299400			48046	6008	39836	39861	51559	51559					0.11165634494273036
REVLEKQPVL	10	Unmodified	_REVLEKQPVL_					0	0	0		ENST00000493673.1_1_1:151373717-151374107:+|nuORF;ENST00000474100.1_1_1:151372658-151373852:+|nuORF;ENSG00000159377|ENST00000290541|PSMB4	ENST00000493673.1_1_1:151373717-151374107:+|nuORF	ENST00000493673.1_1_1:151373717-151374107:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	605.861338	1209.70812	-0.50499	-0.00030596	0.1919	0.00011626	-0.3131	-0.00018969	605.8613636348666	66.942	1.2885	64.281	63.9	65.189	-2.661	0.11396	0.00057983	NaN	54.722	60	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214760			48047	6008	39836	39861							0.11165634494273036
REVLEKQPVL	10	Unmodified	_REVLEKQPVL_					0	0	0		ENST00000493673.1_1_1:151373717-151374107:+|nuORF;ENST00000474100.1_1_1:151372658-151373852:+|nuORF;ENSG00000159377|ENST00000290541|PSMB4	ENST00000493673.1_1_1:151373717-151374107:+|nuORF	ENST00000493673.1_1_1:151373717-151374107:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	605.861338	1209.70812	1.9122	0.0011585	-2.3289	-0.001411	-0.41672	-0.00025247	605.859808056283	67.75	1.2247	64.259	63.988	65.212	-3.4902	0.092659	-0.0024747	NaN	54.722	61	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	333360			48048	6008	39836	39861							0.11165634494273036
REVLLQVLAL	10	Unmodified	_REVLLQVLAL_					0	0	0			REV__ENST00000486778.1_1_9:101546182-101546722:-|nuORF	REV__ENST00000486778.1_1_9:101546182-101546722:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	577.3671875	2	577.368798	1152.72304	-1.6942	-0.00097816	1.3228	0.00076377	-0.37133	-0.00021439	577.3694914290571	127.2	2.4686	125.77	125.44	127.91	-1.4357					130	48	5	0	0	0	0.44431	1	12118	12118		62.107	1.1355	1	1097800	+		48049	21060	39837	39862	51560	51560					0.15279126362293027
REVQAEIGKL	10	Unmodified	_REVQAEIGKL_					0	0	0		ENSG00000103549|ENST00000324685|RNF40;nc|ENSG00000103549|O75150-3|RNF40;ENST00000493683.5_1_16:30773821-30780773:+|nuORF;nc|ENSG00000103549|O75150-4|RNF40	ENSG00000103549|ENST00000324685|RNF40	ENSG00000103549|ENST00000324685|RNF40	MULTI-MSMS	OvCa99_classI_Rep5	1	571.8311767578125	2	571.830037	1141.64552	-0.73465	-0.00042009	0.038537	2.2037E-05	-0.69611	-0.00039806	571.8300016808682	61.504	0.58129	61.504	61.245	61.826	0					32	13	3	0	0	0	0.43508	1	5425	5425		63.426	1.7352	1	1413500			48050	2330	39838	39863	51561	51561					0.08036488426114374
REVVAGSHEL	10	Unmodified	_REVVAGSHEL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OvCa99_classI_Rep5	1	548.7915649414062	2	548.790912	1095.56727	-0.74024	-0.00040623	0.42349	0.00023241	-0.31674	-0.00017383	548.79105219353	44.511	0.89941	44.511	44.215	45.114	0					42	19	4	0	0	0	0.47131	1	3011	3011		58.246	5.1573	1	3109000			48051	3083	39839	39864	51562	51562					0.023310558408638826
REWTEQETL	9	Unmodified	_REWTEQETL_					0	0	0		SCAP-SMARCC1|1|fusion;ENSG00000173473|ENST00000254480|SMARCC1;ENST00000549209.5_1_12:56565201-56568439:-|nuORF;ENST00000483847.1_1_3:47712102-47719818:-|nuORF;ENST00000552931.1_1_12:56566100-56568508:-|nuORF;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2	SCAP-SMARCC1|1|fusion;nc|ENSG00000139613|Q8TAQ2-2|SMARCC2	SCAP-SMARCC1|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	596.2869262695312	2	596.28566	1190.55677	0.65417	0.00039007	-0.65085	-0.00038809	0.0033173	1.9781E-06	596.2851841143321	72.106	0.97636	72.106	71.707	72.684	0					54	23	4	0	0	0	0.1243	1	7003	7003		90.601	15.558	1	3451500			48052	7382;4787	39840	39865	51563	51563					-0.030889716042338478
REYEELIKL	9	Unmodified	_REYEELIKL_					0	0	0		nc|ENSG00000162614|Q0ZGT2-4|NEXN;nc|ENSG00000162614|Q0ZGT2-3|NEXN;nc|ENSG00000162614|Q0ZGT2-2|NEXN;ENSG00000162614|ENST00000334785|NEXN	nc|ENSG00000162614|Q0ZGT2-4|NEXN	nc|ENSG00000162614|Q0ZGT2-4|NEXN	MULTI-MSMS	OvCa99_classI_Rep5	1	596.8331298828125	2	596.832246	1191.64994	2.6412	0.0015764	-0.40112	-0.0002394	2.2401	0.001337	596.8318260406395	89.128	0.96165	89.128	88.595	89.556	0					63	23	4	0	0	0	0.14855	1	9521	9521		85.161	6.897	1	7681300			48053	6202	39841	39866	51564	51564					0.061779528489978475
REYQDLLNV	9	Unmodified	_REYQDLLNV_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|2|fusion;ENSG00000148798|ENST00000369849|INA;nc|ENSG00000100285|P12036-2|NEFH;ENSG00000100285|ENST00000310624|NEFH;PPFIBP1-VIM|1|fusion;nc|ENSG00000104722|P07197-2|NEFM;ENSG00000104722|ENST00000221166|NEFM;ENSG00000175084|ENST00000373960|DES	ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|1|fusion;nc|ENSG00000104722|P07197-2|NEFM;ENSG00000175084|ENST00000373960|DES	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa99_classI_Rep5	1	575.2999877929688	2	575.29857	1148.58259	2.5013	0.001439	-0.40799	-0.00023471	2.0933	0.0012043	575.2983249118558	96.277	1.2274	96.277	95.997	97.225	0					88	28	5	0	0	0	0.1944	1	10546	10546		77.318	0.54344	1	13266000			48054	1049;15514;7513;2387	39842	39867	51565	51565					0.014239226380595937
REYQDLLNV	9	Unmodified	_REYQDLLNV_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|2|fusion;ENSG00000148798|ENST00000369849|INA;nc|ENSG00000100285|P12036-2|NEFH;ENSG00000100285|ENST00000310624|NEFH;PPFIBP1-VIM|1|fusion;nc|ENSG00000104722|P07197-2|NEFM;ENSG00000104722|ENST00000221166|NEFM;ENSG00000175084|ENST00000373960|DES	ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|1|fusion;nc|ENSG00000104722|P07197-2|NEFM;ENSG00000175084|ENST00000373960|DES	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa9_classI_Rep2	2	575.2979736328125	2	575.29857	1148.58259	-0.84795	-0.00048782	0.245	0.00014095	-0.60294	-0.00034687	575.2986924624174	97.666	0.7856	96.707	96.365	97.15	-0.95856					51	15	4	0	0	0	0.13326	2	8861	8861;8867		88.177	18.322	1	1043800			48055	1049;15514;7513;2387	39842	39867	51566;51567	51566					0.014239226380595937
REYQDLLNV	9	Unmodified	_REYQDLLNV_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|2|fusion;ENSG00000148798|ENST00000369849|INA;nc|ENSG00000100285|P12036-2|NEFH;ENSG00000100285|ENST00000310624|NEFH;PPFIBP1-VIM|1|fusion;nc|ENSG00000104722|P07197-2|NEFM;ENSG00000104722|ENST00000221166|NEFM;ENSG00000175084|ENST00000373960|DES	ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|1|fusion;nc|ENSG00000104722|P07197-2|NEFM;ENSG00000175084|ENST00000373960|DES	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa9_classI_Rep3	3	575.2991943359375	2	575.29857	1148.58259	-0.91232	-0.00052485	0.50216	0.00028889	-0.41015	-0.00023596	575.2987938975226	98.512	0.72591	96.752	96.417	97.143	-1.7595					43	13	4	0	0	0	0.32653	2	6575	6575;6605		59.931	10.395	1	1521200			48056	1049;15514;7513;2387	39842	39867	51568;51569	51568					0.014239226380595937
REYQDLLNV	9	Unmodified	_REYQDLLNV_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|2|fusion;ENSG00000148798|ENST00000369849|INA;nc|ENSG00000100285|P12036-2|NEFH;ENSG00000100285|ENST00000310624|NEFH;PPFIBP1-VIM|1|fusion;nc|ENSG00000104722|P07197-2|NEFM;ENSG00000104722|ENST00000221166|NEFM;ENSG00000175084|ENST00000373960|DES	ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|1|fusion;nc|ENSG00000104722|P07197-2|NEFM;ENSG00000175084|ENST00000373960|DES	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.300048828125	2	575.29857	1148.58259	-0.80705	-0.0004643	0.37715	0.00021697	-0.4299	-0.00024732	575.2987375890002	99.043	0.67466	96.718	96.433	97.108	-2.3253					43	12	4	0	0	0	0.29519	2	8822	8812;8822		63.534	4.7519	1	1446600			48057	1049;15514;7513;2387	39842	39867	51570;51571	51571					0.014239226380595937
REYQDLLNVKM	11	Unmodified	_REYQDLLNVKM_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|2|fusion;ENSG00000148798|ENST00000369849|INA;nc|ENSG00000100285|P12036-2|NEFH;ENSG00000100285|ENST00000310624|NEFH;PPFIBP1-VIM|1|fusion;nc|ENSG00000104722|P07197-2|NEFM;ENSG00000104722|ENST00000221166|NEFM;ENSG00000175084|ENST00000373960|DES	ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|1|fusion;nc|ENSG00000104722|P07197-2|NEFM;ENSG00000175084|ENST00000373960|DES	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa99_classI_Rep5	1	470.2466735839844	3	470.246621	1407.71803	1.4448	0.0006794	0.2465	0.00011592	1.6913	0.00079531	470.2467135865414	93.452	0.91498	93.452	93.179	94.094	0					64	21	4	0	0	0	0.049875	2	10121	10121;10150		123.62	47.966	1	18059000			48058	1049;15514;7513;2387	39843	39868	51572;51573	51572					0.030484544373393874
REYQDLLNVKM	11	Oxidation (M)	_REYQDLLNVKM(Oxidation (M))_		REYQDLLNVKM(1)		REYQDLLNVKM(110)	0	0	1		ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|2|fusion;ENSG00000148798|ENST00000369849|INA;nc|ENSG00000100285|P12036-2|NEFH;ENSG00000100285|ENST00000310624|NEFH;PPFIBP1-VIM|1|fusion;nc|ENSG00000104722|P07197-2|NEFM;ENSG00000104722|ENST00000221166|NEFM;ENSG00000175084|ENST00000373960|DES	ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|1|fusion;nc|ENSG00000104722|P07197-2|NEFM;ENSG00000175084|ENST00000373960|DES	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa9_classI_Rep2	2	475.5768127441406	3	475.57826	1423.71295	-0.20157	-9.5862E-05	0.017192	8.1763E-06	-0.18438	-8.7686E-05	475.5782025851533	78.239	1.6827	76.499	76.039	77.722	-1.7398					96	32	4	0	0	0	0.051721	3	6533	6527;6533;6540		114.71	52.945	1	530310			48059	1049;15514;7513;2387	39843	39869	51574;51575;51576	51575		36			0.01804150574707819
REYQDLLNVKM	11	Oxidation (M)	_REYQDLLNVKM(Oxidation (M))_		REYQDLLNVKM(1)		REYQDLLNVKM(91)	0	0	1		ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|2|fusion;ENSG00000148798|ENST00000369849|INA;nc|ENSG00000100285|P12036-2|NEFH;ENSG00000100285|ENST00000310624|NEFH;PPFIBP1-VIM|1|fusion;nc|ENSG00000104722|P07197-2|NEFM;ENSG00000104722|ENST00000221166|NEFM;ENSG00000175084|ENST00000373960|DES	ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|1|fusion;nc|ENSG00000104722|P07197-2|NEFM;ENSG00000175084|ENST00000373960|DES	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa9_classI_Rep3	3	475.5784606933594	3	475.57826	1423.71295	0.81168	0.00038602	-0.99551	-0.00047344	-0.18383	-8.7426E-05	475.57773821978935	78.889	1.8512	76.549	76.111	77.962	-2.3399					127	36	5	0	0	0	0.12642	2	4226	4221;4226		91.469	50.389	1	649490			48060	1049;15514;7513;2387	39843	39869	51577;51578	51578		36			0.01804150574707819
REYQDLLNVKM	11	Oxidation (M)	_REYQDLLNVKM(Oxidation (M))_		REYQDLLNVKM(1)		REYQDLLNVKM(110)	0	0	1		ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|2|fusion;ENSG00000148798|ENST00000369849|INA;nc|ENSG00000100285|P12036-2|NEFH;ENSG00000100285|ENST00000310624|NEFH;PPFIBP1-VIM|1|fusion;nc|ENSG00000104722|P07197-2|NEFM;ENSG00000104722|ENST00000221166|NEFM;ENSG00000175084|ENST00000373960|DES	ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|1|fusion;nc|ENSG00000104722|P07197-2|NEFM;ENSG00000175084|ENST00000373960|DES	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.5788879394531	3	475.57826	1423.71295	0.2679	0.00012741	-1.3274	-0.00063128	-1.0595	-0.00050387	475.57756415052836	79.184	1.2912	76.433	76.085	77.376	-2.7514					83	26	4	0	0	0	0.051721	2	6422	6410;6422		114.71	68.253	1	892620			48061	1049;15514;7513;2387	39843	39869	51579;51580	51580		36			0.01804150574707819
REYQDLLNVKM	11	Oxidation (M)	_REYQDLLNVKM(Oxidation (M))_					0	0	1		ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|2|fusion;ENSG00000148798|ENST00000369849|INA;nc|ENSG00000100285|P12036-2|NEFH;ENSG00000100285|ENST00000310624|NEFH;PPFIBP1-VIM|1|fusion;nc|ENSG00000104722|P07197-2|NEFM;ENSG00000104722|ENST00000221166|NEFM;ENSG00000175084|ENST00000373960|DES	ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|1|fusion;nc|ENSG00000104722|P07197-2|NEFM;ENSG00000175084|ENST00000373960|DES	ENSG00000026025|ENST00000544301|VIM	MULTI-MATCH	OvCa99_classI_Rep5	1		3	475.57826	1423.71295	2.2841	0.0010863	-0.28336	-0.00013476	2.0007	0.00095151	475.5780453220473	76.39	0.64205	76.39	76.076	76.718	0	-0.077501	0.00029384	NaN	114.71	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1328000			48062	1049;15514;7513;2387	39843	39869				36			0.01804150574707819
REYQELMNVKL	11	Unmodified	_REYQELMNVKL_					0	0	0		CON__H-INV:HIT000292931;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF	CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8	ENSG00000170421|ENST00000692008|KRT8	MULTI-MSMS	OvCa9_classI_Rep2	2	474.9175109863281	3	474.918505	1421.73368	-0.21878	-0.0001039	0.22526	0.00010698	0.0064729	3.0741E-06	474.9185209595166	93.464	1.5325	92.296	92.054	93.586	-1.168					97	29	5	0	0	0	0.07667	1	8353	8353		102.05	29.804	1	363110		+	48063	622;610	39844	39870	51581	51581					0.039687409543830654
REYQELMNVKL	11	Unmodified	_REYQELMNVKL_					0	0	0		CON__H-INV:HIT000292931;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF	CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8	ENSG00000170421|ENST00000692008|KRT8	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.9192810058594	3	474.918505	1421.73368	-0.23391	-0.00011109	0.19964	9.4812E-05	-0.034272	-1.6276E-05	474.91847000061705	94.96	1.4565	92.491	92.16	93.616	-2.4685					85	28	5	0	0	0	0.207	1	8338	8338		79.036	15.609	1	395210		+	48064	622;610	39844	39870	51582	51582					0.039687409543830654
REYQELMNVKL	11	Unmodified	_REYQELMNVKL_					0	0	0		CON__H-INV:HIT000292931;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF	CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8	ENSG00000170421|ENST00000692008|KRT8	MULTI-MATCH	OvCa99_classI_Rep5	1		3	474.918505	1421.73368	1.8057	0.00085756	0.55334	0.00026279	2.359	0.0011203	475.2530009379933	92.194	0.50755	92.194	91.964	92.472	0	-0.17322	0.00051877	NaN	102.05	29	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1113100		+	48065	622;610	39844	39870							0.039687409543830654
REYQELMNVKL	11	Unmodified	_REYQELMNVKL_					0	0	0		CON__H-INV:HIT000292931;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF	CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8	ENSG00000170421|ENST00000692008|KRT8	MULTI-MATCH	OvCa9_classI_Rep3	3		3	474.918505	1421.73368	0.19007	9.0266E-05	-0.01543	-7.328E-06	0.17464	8.2938E-05	475.25275092521713	94.383	1.3617	92.488	92.153	93.515	-1.8956	0.12058	-0.00029159	NaN	102.05	82	26	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	368180		+	48066	622;610	39844	39870							0.039687409543830654
REYQELMNVKL	11	Oxidation (M)	_REYQELM(Oxidation (M))NVKL_		REYQELM(1)NVKL		REYQELM(74)NVKL	0	0	1		CON__H-INV:HIT000292931;ENST00000547031.5_1_12:53292389-53294972:-|nuORF;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF	CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8	ENSG00000170421|ENST00000692008|KRT8	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.2539367675781	3	480.250143	1437.7286	-0.40842	-0.00019615	0.25962	0.00012468	-0.1488	-7.1462E-05	480.2504063489317	79.771	1.8866	77.02	76.37	78.257	-2.7514					121	38	5	0	0	0	0.24524	1	6488	6488		73.9	17.268	1	692940		+	48067	622;610	39844	39871	51583	51583		16			0.02724437091751497
REYYHQQTRIW	11	Unmodified	_REYYHQQTRIW_					0	0	0			REV__ENSG00000100994|ENST00000216962|PYGB	REV__ENSG00000100994|ENST00000216962|PYGB	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.2880249023438	3	527.263663	1578.76916	-0.95371	-0.00050285	1.0036	0.00052917	0.049913	2.6318E-05	527.5988530364921	28.464	0.14883	28.464	28.34	28.489	0					4	2	2	0	0	0	0.026512	1	935	935		5.4129	0	1	14561	+		48068	17464	39845	39872	51584	51584					0.002925395264128383
RFARLVRHR	9	Unmodified	_RFARLVRHR_					0	0	0			REV__ENST00000463758.1_1_1:1244702-1244984:+|nuORF	REV__ENST00000463758.1_1_1:1244702-1244984:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	605.8718872070312	2	605.87324	1209.73193	-4.9831	-0.0030191	2.8622	0.0017341	-2.1209	-0.001285	605.874829866227	157.02	0.88571	156.79	156.54	157.42	-0.22696					68	24	4	0	0	0	0.67509	1	16005	16005		23.042	1.3567	1	101120	+		48069	26135	39846	39873	51585	51585					0.13544957561953197
RFASYRPRSSE	11	Unmodified	_RFASYRPRSSE_					0	0	0			REV__ENST00000610159.1_1_4:140374466-140374664:-|nuORF	REV__ENST00000610159.1_1_4:140374466-140374664:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	452.70452880859375	3	452.565342	1354.6742	-0.69034	-0.00031242	0.37058	0.00016771	-0.31976	-0.00014471	452.56552707071654	27.467	0.3999	27.467	27.291	27.691	0					24	7	4	0	0	0	0.026113	1	804	804		30.569	27.543	1	170590	+		48070	28106	39847	39874	51586	51586					0.011046060552416748
RFAVPDHIPD	10	Unmodified	_RFAVPDHIPD_					0	0	0			REV__sp|Q6SW04|IRS1_HCMVMProteinIRS1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=IRS1PE=3SV=1	REV__sp|Q6SW04|IRS1_HCMVMProteinIRS1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=IRS1PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8028564453125	2	583.80128	1165.58801	0.97841	0.0005712	1.9394	0.0011322	2.9178	0.0017034	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.71192	1	1430	1430		29.15	3.5755	1	155970	+		48071	29442	39848	39875	51587	51587					0.011836462205110365
RFDVEVSVLG	10	Unmodified	_RFDVEVSVLG_					0	0	0		nc|ENSG00000116525|Q9BVG3-2|TRIM62;ENSG00000116525|ENST00000291416|TRIM62	nc|ENSG00000116525|Q9BVG3-2|TRIM62	nc|ENSG00000116525|Q9BVG3-2|TRIM62	MULTI-MSMS	OvCa9_classI_Rep2	2	560.8035888671875	2	560.803488	1119.59242	0.98251	0.00055099	-1.1969	-0.0006712	-0.21435	-0.00012021	560.8027147964513	112.28	0.74033	112.15	111.78	112.52	-0.12174					37	14	3	0	0	0	0.52439	1	10645	10645		51.193	3.5354	1	466450			48072	3184	39849	39876	51588	51588					0.03741110643431966
RFEEAHFTF	9	Unmodified	_RFEEAHFTF_					0	0	0		ENST00000498436.2_1_1:145578572-145580415:+|nuORF;ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3	ENST00000498436.2_1_1:145578572-145580415:+|nuORF	ENST00000498436.2_1_1:145578572-145580415:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	592.2816772460938	2	592.28018	1182.54581	2.3004	0.0013625	-0.35884	-0.00021253	1.9415	0.0011499	592.279969343895	85.933	3.0527	85.933	85.624	88.677	0					207	73	5	0	0	0	0.018335	4	9046	9017;9046;9076;9107		148.99	58.617	1	82131000			48073	4091	39850	39877	51589;51590;51591;51592	51590					-0.03816329187861811
RFEEKHAYF	9	Unmodified	_RFEEKHAYF_					0	0	0		ENSG00000101343|ENST00000536226|CRNKL1;nc|ENSG00000101343|Q9BZJ0-3|CRNKL1;nc|ENSG00000101343|Q9BZJ0|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	ENSG00000101343|ENST00000536226|CRNKL1	MULTI-MSMS	OvCa99_classI_Rep5	1	613.804443359375	2	613.80128	1225.58801	-0.3763	-0.00023097	0.33157	0.00020352	-0.044728	-2.7454E-05	613.8013759379666	50.791	0.99323	50.791	50.551	51.544	0					51	22	4	0	0	0	0.22035	1	3872	3872		72.879	21.687	1	2640300			48074	2168	39851	39878	51593	51593					-0.015763537795010052
RFERLRRALEL	11	Unmodified	_RFERLRRALEL_					0	0	0		SLTM|p.M629L|1|0.06|ENSG00000137776|chr15:58892910-58892910|T/A|missense_variant	SLTM|p.M629L|1|0.06|ENSG00000137776|chr15:58892910-58892910|T/A|missense_variant	SLTM|p.M629L|1|0.06|ENSG00000137776|chr15:58892910-58892910|T/A|missense_variant	MSMS	OvCa9_classI_Rep4_	4	486.9597473144531	3	486.959915	1457.85791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	162.69	1	161.05	160.55	161.55	-1.6336								0	0	0	0.19474	1	16078	16078		11.455	2.6553	1				48075	32839	39852	39879	51594	51594					0.14729999556766415
RFESLPSGVP	10	Unmodified	_RFESLPSGVP_					0	0	0			REV__ENSG00000196460|ENST00000428343|RFX8	REV__ENSG00000196460|ENST00000428343|RFX8	MULTI-MSMS	OvCa9_classI_Rep2	2	544.791015625	2	544.790381	1087.56621	-0.71187	-0.00038782	3.6432	0.0019848	2.9313	0.001597	544.79222686285	32.37	1.6392	29.661	29.382	31.021	-2.7097					66	32	3	0	0	0	0.73378	1	1097	1097		26.693	3.6504	1	151030	+		48076	22832	39853	39880	51595	51595					0.025928414719601278
RFFDQILP	8	Unmodified	_RFFDQILP_					0	0	0			REV__nc|ENSG00000204682|Q5T4H9|MIR1915HG	REV__nc|ENSG00000204682|Q5T4H9|MIR1915HG	MULTI-MSMS	OvCa99_classI_Rep5	1	518.7891235351562	2	518.284734	1034.55492	1.4923	0.00077343	0.52425	0.00027171	2.0165	0.0010451	518.2847289052374	77.732	0.92193	77.732	77.252	78.174	0					83	21	5	0	0	0	0.61436	1	7812	7812		60.972	4.2509	1	9733300	+		48077	29104	39854	39881	51596	51596					0.03902064168482866
RFFENPAL	8	Unmodified	_RFFENPAL_					0	0	0		nc|ENSG00000170615|P58743-5|SLC26A5;nc|ENSG00000170615|P58743-6|SLC26A5;ENSG00000170615|ENST00000306312|SLC26A5	nc|ENSG00000170615|P58743-5|SLC26A5	nc|ENSG00000170615|P58743-5|SLC26A5	MULTI-MSMS	OvCa99_classI_Rep5	1	497.26080322265625	2	497.261259	992.507966	-0.67198	-0.00033415	-2.111	-0.0010497	-2.783	-0.0013839	497.2602930620248	66.451	0.35557	66.451	66.136	66.491	0					21	8	4	0	0	0	0.6345	1	6145	6145		56.721	3.3696	1	2436500			48078	7125	39855	39882	51597	51597					0.01141204617317726
RFFETVNITI	10	Unmodified	_RFFETVNITI_					0	0	0			REV__tr|A0A7D6ZNM7|A0A7D6ZNM7_9CLOTprotein-glutamateO-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17065PE=4SV=1	REV__tr|A0A7D6ZNM7|A0A7D6ZNM7_9CLOTprotein-glutamateO-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17065PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	620.3388671875	2	620.340238	1238.66592	-1.1749	-0.00072885	-1.7283	-0.0010721	-2.9032	-0.001801	620.3390681506844	36.554	0.67217	36.554	36.351	37.023	0					36	14	4	0	0	0	0.53396	1	1933	1933		30.318	1.1682	1	967960	+		48079	32121	39856	39883	51598	51598					0.05613659085906875
RFFETVNITI	10	Unmodified	_RFFETVNITI_					0	0	0			REV__tr|A0A7D6ZNM7|A0A7D6ZNM7_9CLOTprotein-glutamateO-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17065PE=4SV=1	REV__tr|A0A7D6ZNM7|A0A7D6ZNM7_9CLOTprotein-glutamateO-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17065PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	620.340238	1238.66592	-1.1749	-0.00072885	-1.7283	-0.0010721	-2.9032	-0.001801	620.3390681506844	36.554	0.67217	36.554	36.351	37.023	0	0	0	NaN	30.318	36	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	967960	+		48080	32121	39856	39883							0.05613659085906875
RFFLRDLF	8	Unmodified	_RFFLRDLF_					0	0	0			REV__tr|A0A553STB8|A0A553STB8_NIACIBacterialEndoUnucleasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04690PE=4SV=1	REV__tr|A0A553STB8|A0A553STB8_NIACIBacterialEndoUnucleasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04690PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.3165893554688	2	557.313826	1112.6131	1.5567	0.00086754	4.3631	0.0024316	5.9197	0.0032991	557.3163824775255	35.608	1.7447	32.759	32.441	34.186	-2.849					93	34	3	0	0	0	0.73626	1	1209	1209		33.516	4.3455	1	1396800	+		48081	30946	39857	39884	51599	51599					0.061297458137460126
RFFRLRKEEFK	11	Unmodified	_RFFRLRKEEFK_					0	0	0			REV__PACSIN2|p.Q235K|1|0.52|ENSG00000100266|chr22:42884468-42884468|G/T|missense_variant	REV__PACSIN2|p.Q235K|1|0.52|ENSG00000100266|chr22:42884468-42884468|G/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.3060913085938	3	519.300048	1554.87832	0.63827	0.00033145	3.7563	0.0019506	4.3946	0.0022821	519.3024651672421	36.354	1.2465	33.505	33.09	34.336	-2.849					48	24	3	0	0	0	0.026448	1	1210	1210		13.508	4.7086	1	57130	+		48082	29273	39858	39885	51600	51600					0.12307170216536178
RFFRLRKEEFK	11	Unmodified	_RFFRLRKEEFK_					0	0	0			REV__PACSIN2|p.Q235K|1|0.52|ENSG00000100266|chr22:42884468-42884468|G/T|missense_variant	REV__PACSIN2|p.Q235K|1|0.52|ENSG00000100266|chr22:42884468-42884468|G/T|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		3	519.300048	1554.87832	-2.4947	-0.0012955	5.9501	0.0030899	3.4554	0.0017944	519.3032483378516	36.557	0.44361	33.847	33.696	34.14	-2.7097	0.17103	0.00052792	NaN	8.7993	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16564	+		48083	29273	39858	39885							0.12307170216536178
RFFSRRGERRQ	11	Unmodified	_RFFSRRGERRQ_					0	0	0			REV__ENST00000498272.1_1_1:54519261-54519429:+|nuORF	REV__ENST00000498272.1_1_1:54519261-54519429:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.9444580078125	3	498.943147	1493.80761	-1.0023	-0.00050008	1.2088	0.00060311	0.20649	0.00010303	498.9437780016878	81.177	4.5443	78.467	78.101	82.645	-2.7106					241	93	6	0	0	0	0.70587	2	6667	6667;6679		27.644	4.266	1	6586900	+		48084	26791	39859	39886	51601;51602	51601					0.08045889951586105
RFGLEIFRS	9	Unmodified	_RFGLEIFRS_					0	0	0			REV__ENST00000509178.5_1_5:134117763-134126202:+|nuORF	REV__ENST00000509178.5_1_5:134117763-134126202:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	562.8163452148438	2	562.81419	1123.61383	0.96103	0.00054088	-1.0154	-0.00057147	-0.054353	-3.059E-05	562.8135477006083	72.353	1.7423	72.353	72.086	73.829	0					125	43	6	0	0	0	0.21231	1	7027	7027		74.255	14.137	1	39343000	+		48085	26924	39860	39887	51603	51603					0.05696540462804478
RFHLAYAPG	9	Unmodified	_RFHLAYAPG_					0	0	0			REV__ENSG00000095203|ENST00000374566|EPB41L4B	REV__ENSG00000095203|ENST00000374566|EPB41L4B	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.8302001953125	2	516.274701	1030.53485	0.47146	0.0002434	-2.0454	-0.001056	-1.5739	-0.00081256	516.2736357811979	133	0.9368	132.78	132.42	133.36	-0.22697					32	18	2	0	0	0	0.027462	1	13181	13181		30.504	0	1	55874	+		48086	17283	39861	39888	51604	51604					0.020803132284981984
RFIDSYRKRG	10	Unmodified	_RFIDSYRKRG_					0	0	0			REV__GMIP|p.S830Rfs*8|1|0.07|ENSG00000089639|chr19:19630519-19630520|CA/-|frameshift_variant	REV__GMIP|p.S830Rfs*8|1|0.07|ENSG00000089639|chr19:19630519-19630520|CA/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	649.3639526367188	2	649.359828	1296.7051	1.8809	0.0012214	-1.2572	-0.00081634	0.62373	0.00040502	649.3590354108705	113.77	0.57066	113.77	113.53	114.11	0					24	12	2	0	0	0	0.67931	1	13002	13002		32.812	1.2826	1	754550	+		48087	17210	39862	39889	51605	51605					0.0686180416012121
RFIGATANF	9	Unmodified	_RFIGATANF_					0	0	0		ENSG00000172922|ENST00000308418|RNASEH2C	ENSG00000172922|ENST00000308418|RNASEH2C	ENSG00000172922|ENST00000308418|RNASEH2C	MULTI-MSMS	OvCa99_classI_Rep5	1	498.76763916015625	2	498.766709	995.518865	2.153	0.0010739	-0.21126	-0.00010537	1.9418	0.00096848	498.76650079228654	84.825	1.3622	84.825	84.55	85.912	0					82	32	4	0	0	0	0.018335	2	8891	8864;8891		148.99	58.21	1	7367200			48088	7330	39863	39890	51606;51607	51607					0.02092606991595858
RFILNLPTF	9	Unmodified	_RFILNLPTF_					0	0	0		ENSG00000126067|ENST00000373237|PSMB2;KIAA0319L-PSMB2|1|fusion;KIAA0319L-PSMB2|2|fusion	ENSG00000126067|ENST00000373237|PSMB2	ENSG00000126067|ENST00000373237|PSMB2	MULTI-MSMS	OvCa99_classI_Rep5	1	560.8313598632812	2	560.829309	1119.64407	1.1762	0.00065964	1.0112	0.00056709	2.1873	0.0012267	560.829771323191	141.06	1.8045	141.06	140.73	142.54	0					85	35	5	0	0	0	0.019133	3	16484	16461;16484;16511		148.04	41.628	1	1472200			48089	3764	39864	39891	51608;51609;51610	51609					0.08902899127974706
RFIPYTEEF	9	Unmodified	_RFIPYTEEF_					0	0	0		nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP;ENSG00000107651|ENST00000369075|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	nc|ENSG00000107651|Q9Y6Y8-2|SEC23IP	MULTI-MSMS	OvCa99_classI_Rep5	1	601.2991333007812	2	601.298039	1200.58152	0.25398	0.00015272	-0.08581	-5.1597E-05	0.16817	0.00010112	601.2981230853081	105.28	0.74689	105.28	105.04	105.79	0					38	16	4	0	0	0	0.3249	1	11826	11826		60.118	14.166	1	1498500			48090	2607	39865	39892	51611	51611					-0.010742917308789401
RFIQAHPQW	9	Unmodified	_RFIQAHPQW_					0	0	0		ENST00000268712.7_1_17:16075166-16089874:-|nuORF;ENST00000460276.5_1_17:16075166-16075322:-|nuORF	ENST00000268712.7_1_17:16075166-16089874:-|nuORF	ENST00000268712.7_1_17:16075166-16089874:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	591.8133544921875	2	591.811982	1181.60941	-0.48123	-0.0002848	0.45869	0.00027146	-0.022536	-1.3337E-05	591.8123289447782	69.627	1.0174	69.627	69.268	70.286	0					81	24	5	0	0	0	0.40667	1	6623	6623		51.335	3.6781	1	4849800			48091	9976	39866	39893	51612	51612					0.025870760398902348
RFIQVVRRVNQ	11	Unmodified	_RFIQVVRRVNQ_					0	0	0			REV__ENSG00000182674|ENST00000523207|KCNB2	REV__ENSG00000182674|ENST00000523207|KCNB2	MULTI-MSMS	OvCa9_classI_Rep2	2	472.2832336425781	3	472.28451	1413.8317	-4.9212	-0.0023242	2.9946	0.0014143	-1.9266	-0.0009099	472.28593650401154	158.64	2.575	158.42	157.5	160.08	-0.22696					106	62	3	0	0	0	0.72516	1	16111	16111		13.508	0.55046	1	56212	+		48092	22311	39867	39894	51613	51613					0.14133730385265153
RFITILEEL	9	Unmodified	_RFITILEEL_					0	0	0			REV__nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1	REV__nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.32958984375	2	567.331882	1132.64921	-0.48412	-0.00027465	-3.1025	-0.0017602	-3.5866	-0.0020348	567.3299446868054	145.54	4.8872	144.11	142.68	147.57	-1.4357					247	95	4	0	0	0	0.67509	1	14206	14206		23.042	0.46283	1	208760	+		48093	17498	39868	39895	51614	51614					0.0881915819995811
RFKDATEV	8	Unmodified	_RFKDATEV_					0	0	0		nc|ENSG00000119684|Q9UHC1-2|MLH3;ENSG00000119684|ENST00000355774|MLH3;MLH3|p.S680Rfs*5|1|0.07|ENSG00000119684|chr14:75047616-75047617|-/AC|frameshift_variant;MLH3|p.P863Hfs*9|1|0.09|ENSG00000119684|chr14:75047068-75047069|-/ATCTCATGCACAT|frameshift_variant;MLH3|p.D939Efs*7|1|0.09|ENSG00000119684|chr14:75046839-75046840|-/C|frameshift_variant	nc|ENSG00000119684|Q9UHC1-2|MLH3	nc|ENSG00000119684|Q9UHC1-2|MLH3	MULTI-MSMS	OvCa9_classI_Rep4_	4	483.255126953125	2	483.256174	964.497795	-0.22732	-0.00010985	-1.6311	-0.00078824	-1.8584	-0.00089809	483.25502499166134	63.846	1.2591	60.371	60.109	61.368	-3.475					58	25	3	0	0	0	0.59148	1	4504	4504		65.803	9.0821	1	1238200			48094	3381	39869	39896	51615	51615					0.01412596892100737
RFKMMLTL	8	Unmodified	_RFKMMLTL_					0	0	0		ENSG00000104450|ENST00000388798|SPAG1	ENSG00000104450|ENST00000388798|SPAG1	ENSG00000104450|ENST00000388798|SPAG1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3467407226562	2	520.293191	1038.57183	3.5263	0.0018347	-4.0821	-0.0021239	-0.55579	-0.00028917	520.7939190438482	131.48	0.40076	129.99	129.78	130.18	-1.4907					10	8	2	0	0	0	0.028476	1	12655	12655		47.916	7.1374	1	7497.4			48095	2379	39870	39897	51616	51616					0.0540852545841517
RFKNKAYLL	9	Unmodified	_RFKNKAYLL_					0	0	0		nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1;nc|ENSG00000100697|Q9UPY3-3|DICER1	nc|ENSG00000100697|Q9UPY3-2|DICER1	nc|ENSG00000100697|Q9UPY3-2|DICER1	MULTI-MSMS	OvCa99_classI_Rep5	1	576.849609375	2	576.848033	1151.68151	-0.65452	-0.00037756	0.43287	0.0002497	-0.22165	-0.00012786	576.8481813980136	53.147	0.77716	53.147	52.915	53.692	0					47	17	4	0	0	0	0.40667	1	4208	4208		51.335	5.3835	1	2022400			48096	2098	39871	39898	51617	51617					0.11173990393604072
RFKTQPVTF	9	Unmodified	_RFKTQPVTF_					0	0	0		ENSG00000187479|ENST00000617612|C11orf96;nc|nan|Q7Z7L8|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	ENSG00000187479|ENST00000617612|C11orf96	MULTI-MSMS	OvCa99_classI_Rep5	1	562.317626953125	2	562.316566	1122.61858	-0.33848	-0.00019033	-0.66231	-0.00037243	-1.0008	-0.00056276	562.316138379619	65.923	1.5081	65.923	65.665	67.173	0					136	37	8	0	0	0	0.045281	3	6066	6066;6094;6124		122.18	53.389	1	42892000			48097	8402	39872	39899	51618;51619;51620	51618					0.06217424605551969
RFLFFCFLSI	10	Unmodified	_RFLFFCFLSI_					0	0	0		ENST00000513638.5_1_1:89889947-89890097:+|nuORF	ENST00000513638.5_1_1:89889947-89890097:+|nuORF	ENST00000513638.5_1_1:89889947-89890097:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	646.847412109375	2	646.846645	1291.67874	1.878	0.0012148	1.6284	0.0010533	3.5064	0.0022681	646.8486261840292	119.88	0.66956	119.88	119.65	120.32	0					35	15	3	0	0	0	0.33877	1	13790	13790		74.255	0	1	1205100			48098	13020	39873	39900	51621	51621					0.04456398944444118
RFLIAFDKP	9	Unmodified	_RFLIAFDKP_					0	0	0			REV__tr|A0A553SFH8|A0A553SFH8_NIACIDNA3'-5'helicaseOS=NialliacirculansOX=1397GN=CEQ21_08910PE=3SV=1	REV__tr|A0A553SFH8|A0A553SFH8_NIACIDNA3'-5'helicaseOS=NialliacirculansOX=1397GN=CEQ21_08910PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.3078002929688	2	553.821484	1105.62842	0.63064	0.00034926	-2.8614	-0.0015847	-2.2308	-0.0012355	553.8197247336428	67.191	0.3945	67.191	66.977	67.371	0					14	9	2	0	0	0	0.027462	1	6295	6295		44.117	0	1	1838500	+		48099	29580	39874	39901	51622	51622					0.07982612610931028
RFLIMILIFLF	11	Unmodified	_RFLIMILIFLF_					0	0	0			REV__tr|A0A7D7A3K2|A0A7D7A3K2_9CLOTDUF4446familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23950PE=4SV=1	REV__tr|A0A7D7A3K2|A0A7D7A3K2_9CLOTDUF4446familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23950PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	475.9622497558594	3	475.961205	1424.86179	0.8114	0.00038619	-0.19905	-9.4739E-05	0.61235	0.00029145	475.961087785801	103.28	1.5158	103.28	102.93	104.45	0					104	35	5	0	0	0	0.7246	1	11520	11520		20.837	0.52214	1	5443300	+		48100	32588	39875	39902	51623	51623					0.1663495300622344
RFLLGPEGQH	10	Unmodified	_RFLLGPEGQH_					0	0	0		ENST00000526007.5_1_8:145058131-145058521:-|nuORF;ENSG00000178685|ENST00000313028|PARP10	ENST00000526007.5_1_8:145058131-145058521:-|nuORF	ENST00000526007.5_1_8:145058131-145058521:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	577.306640625	2	577.309272	1152.60399	-0.73929	-0.0004268	-3.4198	-0.0019743	-4.1591	-0.0024011	577.3072792887777	39.495	1.5209	36.569	36.296	37.817	-2.9264					91	29	4	0	0	0	0.53807	1	1666	1666		49.536	1.6204	1	892530			48101	7769	39876	39903	51624	51624					0.03379352457409368
RFLSQQLPPG	10	Unmodified	_RFLSQQLPPG_					0	0	0		ENST00000467558.5_1_7:2578584-2579570:-|nuORF	ENST00000467558.5_1_7:2578584-2579570:-|nuORF	ENST00000467558.5_1_7:2578584-2579570:-|nuORF	MSMS	OvCa99_classI_Rep5	1	571.8171997070312	2	571.819473	1141.62439	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.429	1	28.429	27.929	28.929	0								0	0	0	0.13029	1	928	928		56.721	15.943	1				48102	12315	39877	39904	51625	51625					0.059245231172326385
RFPAMITPAY	10	Unmodified	_RFPAMITPAY_					0	0	0		NRAP|p.S169R|1|0.41|ENSG00000197893|chr10:113652998-113652998|G/T|missense_variant	NRAP|p.S169R|1|0.41|ENSG00000197893|chr10:113652998-113652998|G/T|missense_variant	NRAP|p.S169R|1|0.41|ENSG00000197893|chr10:113652998-113652998|G/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	583.802001953125	2	583.804977	1165.5954	0.9784	0.0005712	-4.3928	-0.0025645	-3.4144	-0.0019933	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.69073	1	1426	1426		31.53	1.2121	1	155970			48103	15439	39878	39905	51626	51626					0.019226624965540395
RFRQLAKV	8	Unmodified	_RFRQLAKV_					0	0	0			REV__ENST00000564642.1_1_16:2042626-2043070:+|nuORF	REV__ENST00000564642.1_1_16:2042626-2043070:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.2925109863281	2	509.319443	1016.62433	0.098122	4.9975E-05	-2.0355	-0.0010367	-1.9374	-0.00098677	509.31818158087503	31.199	0.28502	31.199	31.076	31.361	0					11	5	3	0	0	0	0.028476	1	1260	1260		20.482	7.5226	1	69728	+		48104	18820	39879	39906	51627	51627					0.11668567907895522
RFRRPWRRRFI	11	Unmodified	_RFRRPWRRRFI_					0	0	0			REV__ENST00000575234.1_1_16:3355499-3356027:+|nuORF	REV__ENST00000575234.1_1_16:3355499-3356027:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	549.329833984375	3	549.330676	1644.9702	-1.1114	-0.00061055	-0.96733	-0.00053139	-2.0788	-0.0011419	549.3302645089042	27.266	0.59849	27.266	27.043	27.641	0					40	11	5	0	0	0	0.72582	1	785	785		3.2113	2.8991	1	594300	+		48105	27772	39880	39907	51628	51628					0.1735131814423312
RFSPPLRLF	9	Unmodified	_RFSPPLRLF_					0	0	0		ENST00000371953.7_1_10:89623465-89623600:+|nuORF	ENST00000371953.7_1_10:89623465-89623600:+|nuORF	ENST00000371953.7_1_10:89623465-89623600:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	566.836181640625	2	566.834926	1131.6553	2.6556	0.0015053	-0.45423	-0.00025747	2.2014	0.0012478	566.8345525228154	106.25	1.0146	106.25	105.79	106.81	0					67	22	4	0	0	0	0.12515	3	11944	11924;11944;11968		90.37	35.594	1	5748400			48106	10970	39881	39908	51629;51630;51631	51630					0.09473721222116183
RFSTMPFLY	9	Unmodified	_RFSTMPFLY_					0	0	0		ENSG00000134871|ENST00000360467|COL4A2;ENST00000480609.1_1_13:111158832-111160640:+|nuORF	ENSG00000134871|ENST00000360467|COL4A2	ENSG00000134871|ENST00000360467|COL4A2	MULTI-MSMS	OvCa99_classI_Rep5	1	581.2947387695312	2	581.291702	1160.56885	-1.1812	-0.0006866	4.037	0.0023467	2.8559	0.0016601	581.2939251593637	66.146	0.90973	66.146	65.665	66.575	0					57	22	4	0	0	0	0.37135	1	6096	6096		54.776	0	1	4938600			48107	4341	39882	39909	51632	51632					-0.005010263947497151
RFTRPGFKGMV	11	Unmodified	_RFTRPGFKGMV_					0	0	0			REV__CON__Q3SZ57	REV__CON__Q3SZ57	MULTI-SECPEP	OvCa99_classI_Rep5	1	649.3540649414062	2	648.355699	1294.69685	1.9206	0.0012452	-0.56571	-0.00036678	1.3549	0.00087845	648.8587447907514	134.97	0.43329	134.97	134.74	135.17	0					12	9	2	0	0	0	0.025863	1	15714	15714		16.007	0	1	125660	+	+	48108	16209	39883	39910	51633	51633					0.06128533919149959
RFVALKGDL	9	Unmodified	_RFVALKGDL_					0	0	0		nc|ENSG00000132554|Q8NE09-3|RGS22;ENSG00000132554|ENST00000360863|RGS22	nc|ENSG00000132554|Q8NE09-3|RGS22	nc|ENSG00000132554|Q8NE09-3|RGS22	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8038024902344	2	509.805834	1017.59712	-0.41042	-0.00020923	-3.6368	-0.0018541	-4.0473	-0.0020633	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.68424	1	13511	13511		21.96	2.5999	1	150140			48109	4147	39884	39911	51634	51634					0.08902039576844345
RFVQAALSY	9	Unmodified	_RFVQAALSY_					0	0	0		BRINP3|p.M661Nfs*3|1|0.08|ENSG00000162670|chr1:190098333-190098337|TTTCA/-|frameshift_variant;nc|ENSG00000162670|Q76B58-2|BRINP3;ENSG00000162670|ENST00000367462|BRINP3	BRINP3|p.M661Nfs*3|1|0.08|ENSG00000162670|chr1:190098333-190098337|TTTCA/-|frameshift_variant	BRINP3|p.M661Nfs*3|1|0.08|ENSG00000162670|chr1:190098333-190098337|TTTCA/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	527.7865600585938	2	527.787641	1053.56073	0.30874	0.00016295	-3.8245	-0.0020185	-3.5157	-0.0018556	527.7853658084734	45.518	0.82135	45.518	45.068	45.89	0					38	18	3	0	0	0	0.33652	1	3170	3170		58.782	5.4305	1	1679100			48110	161	39885	39912	51635	51635					0.03609162680140798
RFVSKLNSL	9	Unmodified	_RFVSKLNSL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.P12974Lfs*4|1|0.05|ENSG00000155657|chr2:178631204-178631205|-/GTACA|frameshift_variant;TTN|p.E11597Rfs*5|1|0.5|ENSG00000155657|chr2:178651954-178651954|A/-|frameshift_variant;TTN|p.R11195Efs*5|1|0.15|ENSG00000155657|chr2:178674318-178674318|A/-|frameshift_variant;TTN|p.E9011Nfs*14|1|0.03|ENSG00000155657|chr2:178711255-178711255|T/-|frameshift_variant;TTN|p.G8550Tfs*3|1|0.05|ENSG00000155657|chr2:178714032-178714059|ATTTGTTGTCACTTGTTAGCTCTTTTCC/-|frameshift_variant;TTN|p.S7694Qfs*32|1|0.04|ENSG00000155657|chr2:178719360-178719360|G/-|frameshift_variant;TTN|p.C7689Pfs*18|1|0.03|ENSG00000155657|chr2:178719373-178719374|CA/-|frameshift_variant;TTN|p.L7641Yfs*6|1|0.07|ENSG00000155657|chr2:178719621-178719621|T/-|frameshift_variant;TTN|p.T6904Lfs*6|1|0.08|ENSG00000155657|chr2:178723439-178723439|T/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.757568359375	2	532.316566	1062.61858	-1.6629	-0.00088519	2.2807	0.0012141	0.61781	0.00032887	532.3174672955822	65.651	0.53433	62.166	61.938	62.472	-3.4854					22	10	3	0	0	0	0.027411	1	4726	4726		64.207	0	1	51194			48111	5793;36288	39886	39913	51636	51636					0.0897742460556401
RFVSKLNSL	9	Unmodified	_RFVSKLNSL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.P12974Lfs*4|1|0.05|ENSG00000155657|chr2:178631204-178631205|-/GTACA|frameshift_variant;TTN|p.E11597Rfs*5|1|0.5|ENSG00000155657|chr2:178651954-178651954|A/-|frameshift_variant;TTN|p.R11195Efs*5|1|0.15|ENSG00000155657|chr2:178674318-178674318|A/-|frameshift_variant;TTN|p.E9011Nfs*14|1|0.03|ENSG00000155657|chr2:178711255-178711255|T/-|frameshift_variant;TTN|p.G8550Tfs*3|1|0.05|ENSG00000155657|chr2:178714032-178714059|ATTTGTTGTCACTTGTTAGCTCTTTTCC/-|frameshift_variant;TTN|p.S7694Qfs*32|1|0.04|ENSG00000155657|chr2:178719360-178719360|G/-|frameshift_variant;TTN|p.C7689Pfs*18|1|0.03|ENSG00000155657|chr2:178719373-178719374|CA/-|frameshift_variant;TTN|p.L7641Yfs*6|1|0.07|ENSG00000155657|chr2:178719621-178719621|T/-|frameshift_variant;TTN|p.T6904Lfs*6|1|0.08|ENSG00000155657|chr2:178723439-178723439|T/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	532.316566	1062.61858	-0.67051	-0.00035692	2.5767	0.0013716	1.9061	0.0010147	532.3179403697811	64.857	1.0877	62.132	61.705	62.792	-2.7246	-0.017042	0.00017338	NaN	64.207	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37396			48112	5793;36288	39886	39913							0.0897742460556401
RFWWRRRKKIM	11	Unmodified	_RFWWRRRKKIM_					0	0	0			REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF	REV__ENST00000229634.13_1_6:126136448-126199430:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.8026123046875	3	554.992784	1661.95652	0.25115	0.00013938	-0.41037	-0.00022775	-0.15923	-8.8369E-05	555.3272445248929	64.815	0.33084	64.815	64.544	64.875	0					10	7	2	0	0	0	0.026562	1	5900	5900		0	0	1	265130	+		48113	23786	39887	39914	51637	51637					0.1520232432078501
RGAAPPAAP	9	Unmodified	_RGAAPPAAP_					0	0	0			REV__ENST00000258807.5_1_14:24777867-24780024:-|nuORF	REV__ENST00000258807.5_1_14:24777867-24780024:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.2129211425781	2	404.22722	806.439886	1.4641	0.00059183	-1.7344	-0.00070107	-0.27024	-0.00010924	404.2264815764348	62.641	2.0819	62.641	62.335	64.417	0					111	51	5	0	0	0	0.027462	1	5742	5742		18.324	0	1	26968000	+		48114	23913	39888	39915	51638	51638					0.028923797573156662
RGAGLAKVLPV	11	Unmodified	_RGAGLAKVLPV_					0	0	0		nc|ENSG00000173349|Q587I9|SFT2D3	nc|ENSG00000173349|Q587I9|SFT2D3	nc|ENSG00000173349|Q587I9|SFT2D3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.8312377929688	2	540.848033	1079.68151	-1.8588	-0.0010053	4.3592	0.0023577	2.5004	0.0013523	540.8503728710128	124.7	0.41451	123.31	123.13	123.54	-1.3908					15	7	3	0	0	0	0.025298	1	11820	11820		47.657	1.7054	1	80848			48115	15184	39889	39916	51639	51639					0.1448599039358669
RGAGQSRLVL	10	Unmodified	_RGAGQSRLVL_					0	0	0		ENST00000609438.1_1_4:90171359-90228902:-|nuORF	ENST00000609438.1_1_4:90171359-90228902:-|nuORF	ENST00000609438.1_1_4:90171359-90228902:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	528.8173217773438	2	528.817264	1055.61998	2.0567	0.0010876	2.7934	0.0014772	4.8502	0.0025649	528.8185947375962	84.021	0.71661	84.021	83.671	84.388	0					41	16	4	0	0	0	0.48198	1	8796	8796		56.721	1.9447	1	2265400			48116	14303	39890	39917	51640	51640					0.09439058694306368
RGAGRPGVL	9	Unmodified	_RGAGRPGVL_					0	0	0		ENSG00000115084|ENST00000245680|SLC35F5;ENST00000498768.1_1_2:114500256-114514010:-|nuORF	ENSG00000115084|ENST00000245680|SLC35F5	ENSG00000115084|ENST00000245680|SLC35F5	MULTI-MSMS	OvCa99_classI_Rep5	1	441.7690124511719	2	441.767043	881.519533	1.4797	0.00065368	-0.66164	-0.00029229	0.81805	0.00036139	441.7665184737979	67.276	0.94369	67.276	66.898	67.842	0					46	23	3	0	0	0	0.38529	1	6283	6283		53.351	3.3269	1	1623200			48117	3059	39891	39918	51641	51641					0.07403446431317207
RGAIDANIKL	10	Unmodified	_RGAIDANIKL_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.2841186523438	2	535.819473	1069.62439	0.23342	0.00012507	0.26206	0.00014042	0.49548	0.00026549	535.818889443292	66.682	0.56196	66.682	66.452	67.014	0					24	13	2	0	0	0	0.026606	1	6233	6233		44.377	0	1	2777500	+		48118	28942	39892	39919	51642	51642					0.09236523117237994
RGAKDRWGE	9	Unmodified	_RGAKDRWGE_					0	0	0			REV__ENST00000579314.5_1_17:61565977-61574724:+|nuORF	REV__ENST00000579314.5_1_17:61565977-61574724:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.3005981445312	2	537.775597	1073.53664	-0.016738	-9.0012E-06	-0.87322	-0.0004696	-0.88996	-0.0004786	537.7741594236793	69.067	0.16823	69.067	68.977	69.145	0					5	3	2	0	0	0	0.027462	1	6545	6545		15.642	0	1	137610	+		48119	20622	39893	39920	51643	51643					0.002813222464737919
RGAKGIGF	8	Unmodified	_RGAKGIGF_					0	0	0		ENSG00000182154|ENST00000371443|MRPL41	ENSG00000182154|ENST00000371443|MRPL41	ENSG00000182154|ENST00000371443|MRPL41	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.7050476074219	2	403.237587	804.460622	1.1352	0.00045777	-0.7287	-0.00029384	0.40653	0.00016393	403.23718376939297	58.742	0.44268	58.742	58.53	58.973	0					15	10	2	0	0	0	0.028476	1	5024	5024		26.796	13.837	1	407650			48120	7972	39894	39921	51644	51644					0.05056970137002281
RGALLRAF	8	Unmodified	_RGALLRAF_					0	0	0		nc|ENSG00000143450|Q9UMX2-2|OAZ3;ENSG00000143450|ENST00000400999|OAZ3	nc|ENSG00000143450|Q9UMX2-2|OAZ3	nc|ENSG00000143450|Q9UMX2-2|OAZ3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	451.2908935546875	2	452.279786	902.54502	0.45076	0.00020387	-1.7004	-0.00076906	-1.2496	-0.00056519	452.27886699968144	74.544	0.58268	71.313	71.095	71.678	-3.2308					13	11	2	0	0	0	0.028476	1	5805	5805		44.531	7.5026	1	15822			48121	5056	39895	39922	51645	51645					0.08984920953753317
RGAQGHLL	8	Unmodified	_RGAQGHLL_					0	0	0		ENST00000441074.3_1_12:6500103-6500157:+|nuORF	ENST00000441074.3_1_12:6500103-6500157:+|nuORF	ENST00000441074.3_1_12:6500103-6500157:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	426.24609375	2	426.245944	850.477334	-0.93249	-0.00039747	1.1012	0.00046937	0.16868	7.1901E-05	426.2463036759244	138.33	1.7168	138.1	137.59	139.3	-0.22696					83	34	3	0	0	0	0.75915	1	13846	13846		20.482	0	1	161940			48122	11927	39896	39923	51646	51646					0.046114710229517186
RGARGGPKQL	10	Unmodified	_RGARGGPKQL_					0	0	0			REV__ENST00000597244.1_1_19:16686631-16686805:-|nuORF	REV__ENST00000597244.1_1_19:16686631-16686805:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.3053588867188	2	520.309606	1038.60466	-4.1402	-0.0021542	-4.2455	-0.002209	-8.3857	-0.0043632	520.3072815468703	153.07	1.2181	151.63	151.24	152.46	-1.4351					76	30	4	0	0	0	0.55359	1	15145	15145		47.657	3.2801	1	318110	+		48123	27999	39897	39924	51647	51647					0.08690191897153454
RGARIVLVR	9	Unmodified	_RGARIVLVR_					0	0	0		nc|ENSG00000162746|Q6BAA4-3|FCRLB;nc|ENSG00000162746|Q6BAA4-2|FCRLB;ENST00000495397.1_1_1:161696010-161697100:+|nuORF	nc|ENSG00000162746|Q6BAA4-3|FCRLB	nc|ENSG00000162746|Q6BAA4-3|FCRLB	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.800048828125	2	520.345992	1038.67743	1.1859	0.00061707	3.6046	0.0018757	4.7905	0.0024927	520.8493128569586	138.06	0.72592	138.06	137.87	138.59	0					22	15	2	0	0	0	0.027462	1	16129	16129		21.96	13.138	1	99822			48124	12776	39898	39925	51648	51648					0.15963945690555192
RGARNQLKL	9	Unmodified	_RGARNQLKL_					0	0	0			REV__tr|A0A7D6ZI17|A0A7D6ZI17_9CLOTDNAtopoisomerase(ATP-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=HZF06_05265PE=4SV=1	REV__tr|A0A7D6ZI17|A0A7D6ZI17_9CLOTDNAtopoisomerase(ATP-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=HZF06_05265PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.2739868164062	2	528.325257	1054.63596	0.75461	0.00039868	-2.7533	-0.0014546	-1.9987	-0.0010559	528.3237483827097	157.74	1.8079	157.74	156.75	158.56	0					55	36	2	0	0	0	0.027462	1	18455	18455		29.15	2.4566	1	59987	+		48125	32044	39899	39926	51649	51649					0.11082764931234124
RGASLGATYLF	11	Unmodified	_RGASLGATYLF_					0	0	0			REV__tr|A0A7D6VWX1|A0A7D6VWX1_9CLOTPhosphatetransportsystempermeaseproteinPstAOS=ClostridiumintestinaleOX=36845GN=pstAPE=3SV=1	REV__tr|A0A7D6VWX1|A0A7D6VWX1_9CLOTPhosphatetransportsystempermeaseproteinPstAOS=ClostridiumintestinaleOX=36845GN=pstAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	578.3085327148438	2	578.31148	1154.60841	0.58111	0.00033607	-0.4271	-0.000247	0.15402	8.907E-05	578.3111486146285	153.37	2.6295	153.37	152.59	155.22	0					107	54	5	0	0	0	0.65063	1	17935	17935		40.058	0	1	2961600	+		48126	31758	39900	39927	51650	51650					0.037288168803115695
RGAWLPRRRA	10	Unmodified	_RGAWLPRRRA_					0	0	0		ENST00000573341.5_1_17:45177297-45177612:-|nuORF	ENST00000573341.5_1_17:45177297-45177612:-|nuORF	ENST00000573341.5_1_17:45177297-45177612:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8687744140625	2	619.870697	1237.72684	-3.1788	-0.0019704	1.2013	0.00074463	-1.9775	-0.0012258	619.8711859647292	147.21	3.9856	146.98	144.83	148.82	-0.22696					207	79	4	0	0	0	0.81992	1	15030	15030		16.473	1.6083	1	163200			48127	13917	39901	39928	51651	51651					0.11748653699351053
RGCLYFALR	9	Unmodified	_RGCLYFALR_					0	0	0			REV__ENST00000551455.5_1_12:110388962-110434038:-|nuORF	REV__ENST00000551455.5_1_12:110388962-110434038:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.3444213867188	2	549.797486	1097.58042	1.2656	0.00069585	3.393	0.0018654	4.6586	0.0025613	549.7994595091999	79.348	0.19269	79.348	79.202	79.394	0					6	4	2	0	0	0	0.027462	1	8093	8093		23.042	1.0826	1	148220	+		48128	19611	39902	39929	51652	51652					0.03553215419242406
RGCTLFHR	8	Unmodified	_RGCTLFHR_					0	0	0			REV__nc|ENSG00000164078|Q04912-4|MST1R	REV__nc|ENSG00000164078|Q04912-4|MST1R	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.791259765625	2	495.258528	988.502503	-0.011905	-5.8961E-06	0.39504	0.00019565	0.38313	0.00018975	495.2582701364405	76.18	0.56805	73.241	72.936	73.504	-2.9389					14	11	2	0	0	0	0.028476	1	6027	6027		38.806	3.6054	1	37420	+		48129	20937	39903	39930	51653	51653					0.007792025538719827
RGDAATIVAL	10	Unmodified	_RGDAATIVAL_					0	0	0		ENSG00000148411|ENST00000277554|NACC2	ENSG00000148411|ENST00000277554|NACC2	ENSG00000148411|ENST00000277554|NACC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.7862854003906	2	493.785099	985.555644	0.40814	0.00020153	3.2843	0.0016217	3.6924	0.0018233	493.786533625888	123	1.5868	121.63	121.36	122.94	-1.3666					76	31	4	0	0	0	0.50999	1	11613	11613		52.937	1.744	1	252900			48130	5411	39904	39931	51654	51654					0.06228858817530636
RGDDDAFR	8	Unmodified	_RGDDDAFR_					0	0	0		tr|A0A553SGL1|A0A553SGL1_NIACISigma-70familyRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=CEQ21_11080PE=3SV=1	tr|A0A553SGL1|A0A553SGL1_NIACISigma-70familyRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=CEQ21_11080PE=3SV=1	tr|A0A553SGL1|A0A553SGL1_NIACISigma-70familyRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=CEQ21_11080PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.2619323730469	2	476.21758	950.420607	0.054177	2.58E-05	-0.43289	-0.00020615	-0.37871	-0.00018035	476.2171211265134	46.778	0.92567	43.706	43.346	44.272	-3.0724					26	17	2	0	0	0	0.028476	1	2535	2535		17.365	9.6747	1	28250			48131	33170	39905	39932	51655	51655					-0.05658621324243995
RGDDILTIL	9	Unmodified	_RGDDILTIL_					0	0	0		nc|ENSG00000064012|Q14790-3|CASP8;nc|ENSG00000064012|Q14790-2|CASP8;ENSG00000064012|ENST00000673742|CASP8;nc|ENSG00000064012|Q14790-4|CASP8;nc|ENSG00000064012|Q14790-9|CASP8	nc|ENSG00000064012|Q14790-3|CASP8	nc|ENSG00000064012|Q14790-3|CASP8	MULTI-MSMS	OvCa9_classI_Rep2	2	508.2904968261719	2	508.292756	1014.57096	-0.83136	-0.00042257	0.50337	0.00025586	-0.32799	-0.00016671	508.2928265703731	115.58	1.632	115.47	114.95	116.58	-0.11777					68	32	4	0	0	0	0.44568	1	11021	11021		47.657	1.6851	1	251420			48132	1291	39906	39933	51656	51656					0.06425725614712974
RGDFVHEII	9	Unmodified	_RGDFVHEII_					0	0	0			REV__tr|A0A7D6VU01|A0A7D6VU01_9CLOTSpoVRfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05030PE=4SV=1	REV__tr|A0A7D6VU01|A0A7D6VU01_9CLOTSpoVRfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05030PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	543.2928466796875	2	543.290548	1084.56654	-0.7398	-0.00040193	3.592	0.0019515	2.8522	0.0015496	543.2922897112733	82.209	1.2979	79.913	79.534	80.831	-2.2963					54	25	3	0	0	0	0.42676	1	4629	4629		49.442	1.5259	1	684930	+		48133	31642	39907	39934	51657	51657					0.027642611918281546
RGDFVHEII	9	Unmodified	_RGDFVHEII_					0	0	0			REV__tr|A0A7D6VU01|A0A7D6VU01_9CLOTSpoVRfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05030PE=4SV=1	REV__tr|A0A7D6VU01|A0A7D6VU01_9CLOTSpoVRfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05030PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.2930908203125	2	543.290548	1084.56654	-1.0463	-0.00056842	3.4563	0.0018778	2.4101	0.0013094	543.2922433410479	82.634	1.4624	79.951	79.346	80.808	-2.6829					59	29	3	0	0	0	0.3076	1	6843	6843		62.107	9.1707	1	563070	+		48134	31642	39907	39934	51658	51658					0.027642611918281546
RGDFVHEII	9	Unmodified	_RGDFVHEII_					0	0	0			REV__tr|A0A7D6VU01|A0A7D6VU01_9CLOTSpoVRfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05030PE=4SV=1	REV__tr|A0A7D6VU01|A0A7D6VU01_9CLOTSpoVRfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05030PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	543.290548	1084.56654	-0.03364	-1.8276E-05	2.6129	0.0014196	2.5793	0.0014013	543.2919422206656	81.852	1.5548	80.204	79.665	81.22	-1.6485	0.18143	-0.00052439	NaN	62.107	68	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263150	+		48135	31642	39907	39934							0.027642611918281546
RGDGGPKALK	10	Unmodified	_RGDGGPKALK_					0	0	0		nc|ENSG00000080189|Q9NQQ7-2|SLC35C2;ENSG00000080189|ENST00000372230|SLC35C2;nc|ENSG00000080189|Q9NQQ7-3|SLC35C2	nc|ENSG00000080189|Q9NQQ7-2|SLC35C2	nc|ENSG00000080189|Q9NQQ7-2|SLC35C2	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.25921630859375	2	499.790715	997.566878	-0.020539	-1.0265E-05	-0.17557	-8.7751E-05	-0.19611	-9.8016E-05	499.79080896840424	31.981	0.29766	31.981	31.807	32.105	0					7	5	2	0	0	0	0.026931	1	1362	1362		30.318	6.115	1	37408			48136	1629	39908	39935	51659	51659					0.06799680911660744
RGDGVESVP	9	Unmodified	_RGDGVESVP_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa9_classI_Rep3	3	458.232177734375	2	458.230156	914.445759	1.8134	0.00083094	2.7442	0.0012575	4.5576	0.0020884	458.2313291675252	112.07	1.2814	110.97	110.65	111.93	-1.1038					60	25	3	0	0	0	0.3076	1	8166	8166		62.107	7.3311	1	387070	+		48137	28942	39909	39936	51660	51660					-0.0148856652166387
RGDIIQAKK	9	Unmodified	_RGDIIQAKK_					0	0	0			REV__tr|A0A7D6VRB5|A0A7D6VRB5_9CLOTAcetylglutamatekinaseOS=ClostridiumintestinaleOX=36845GN=argBPE=3SV=1	REV__tr|A0A7D6VRB5|A0A7D6VRB5_9CLOTAcetylglutamatekinaseOS=ClostridiumintestinaleOX=36845GN=argBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	514.8145141601562	2	514.81419	1027.61383	2.5746	0.0013254	-2.6896	-0.0013847	-0.11509	-5.9251E-05	514.8126670332618	27.295	1.0989	24.585	24.394	25.493	-2.7097					55	24	4	0	0	0	0.57283	1	489	489		35.152	9.578	1	264850	+		48138	31402	39910	39937	51661	51661					0.1011254046279646
RGDVRVGLFP	10	Unmodified	_RGDVRVGLFP_					0	0	0		ENST00000595305.5_1_19:6750442-6751219:+|nuORF	ENST00000595305.5_1_19:6750442-6751219:+|nuORF	ENST00000595305.5_1_19:6750442-6751219:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	558.3201904296875	2	558.31964	1114.62473	0.31301	0.00017476	-0.27464	-0.00015334	0.038376	2.1426E-05	558.3193007338663	68.822	1.1001	66.008	65.611	66.711	-2.8143					64	21	4	0	0	0	0.66721	1	3015	3015		34.173	0	1	162330			48139	14174	39911	39938	51662	51662					0.07199942837087292
RGDWGWGKGEL	11	Unmodified	_RGDWGWGKGEL_					0	0	0			REV__ENSG00000105227|ENST00000324001|PRX	REV__ENSG00000105227|ENST00000324001|PRX	MULTI-SECPEP	OvCa99_classI_Rep5	1	631.7589721679688	2	630.809636	1259.60472	1.5324	0.00096668	-3.483	-0.0021971	-1.9505	-0.0012304	631.3084101657662	145.92	0.45004	145.92	145.73	146.18	0					11	8	2	0	0	0	0.025668	1	17090	17090		42.338	8.4164	1	41569	+		48140	17706	39912	39939	51663	51663					-0.01469852893501411
RGEASPIRLV	10	Unmodified	_RGEASPIRLV_					0	0	0			REV__ENSG00000204695|ENST00000641895|OR14J1	REV__ENSG00000204695|ENST00000641895|OR14J1	MULTI-MSMS	OvCa9_classI_Rep2	2	549.3233642578125	2	549.324922	1096.63529	-1.9795	-0.0010874	1.6856	0.00092594	-0.29395	-0.00016148	549.3257656556187	35.686	1.1428	32.977	32.75	33.893	-2.7097					64	22	4	0	0	0	0.55109	1	1479	1479		47.96	9.1534	1	371650	+		48141	23180	39913	39940	51664	51664					0.09083925491495393
RGEDPGERD	9	Unmodified	_RGEDPGERD_					0	0	0		ENST00000488719.1_1_22:30975561-30975981:-|nuORF	ENST00000488719.1_1_22:30975561-30975981:-|nuORF	ENST00000488719.1_1_22:30975561-30975981:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.7982177734375	2	515.731052	1029.44755	-0.63708	-0.00032856	-0.7546	-0.00038917	-1.3917	-0.00071773	515.7301157937055	49.186	0.29856	49.186	49.031	49.33	0					9	6	2	0	0	0	0.027462	1	3670	3670		20.947	3.582	1	83777			48142	12669	39914	39941	51665	51665					-0.06599557503705
RGEEESPLI	9	Unmodified	_RGEEESPLI_					0	0	0			REV__nc|ENSG00000141738|Q14451-4|GRB7	REV__nc|ENSG00000141738|Q14451-4|GRB7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.801513671875	2	515.264196	1028.51384	-1.3691	-0.00070544	1.8507	0.0009536	0.4816	0.00024815	515.2652042346359	88.814	0.84432	86.211	85.832	86.676	-2.6027					37	16	4	0	0	0	0.02744	1	7574	7574		36.447	2.2742	1	85633	+		48143	19758	39915	39942	51666	51666					0.0007225833835491358
RGEEFDAIE	9	Unmodified	_RGEEFDAIE_					0	0	0			REV__GLDC|p.I933F|1|0.28|ENSG00000178445|chr9:6536105-6536105|T/A|missense_variant	REV__GLDC|p.I933F|1|0.28|ENSG00000178445|chr9:6536105-6536105|T/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.2430419921875	2	533.246003	1064.47745	2.761	0.0014723	-3.6735	-0.0019589	-0.91249	-0.00048658	533.2439493941978	132.66	1.6161	131.16	130.85	132.46	-1.5015					54	32	2	0	0	0	0.61208	1	12795	12795		30.504	2.6214	1	77504	+		48144	28158	39916	39943	51667	51667					-0.05220618558382739
RGEFLKAIE	9	Unmodified	_RGEFLKAIE_					0	0	0		tr|A0A7D6ZUQ2|A0A7D6ZUQ2_9CLOTAlpha-1,4glucanphosphorylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01110PE=3SV=1	tr|A0A7D6ZUQ2|A0A7D6ZUQ2_9CLOTAlpha-1,4glucanphosphorylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01110PE=3SV=1	tr|A0A7D6ZUQ2|A0A7D6ZUQ2_9CLOTAlpha-1,4glucanphosphorylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01110PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8004150390625	2	531.800749	1061.58694	-2.0056	-0.0010666	1.9486	0.0010363	-0.056983	-3.0304E-05	531.8015751099314	118.31	1.2627	116.97	116.47	117.73	-1.3444					52	23	4	0	0	0	0.51865	1	11075	11075		40.778	1.5253	1	303100			48145	35781	39917	39944	51668	51668					0.058614318515992636
RGEGNQSLN	9	Unmodified	_RGEGNQSLN_					0	0	0			REV__ENSG00000162927|ENST00000316752|PUS10	REV__ENSG00000162927|ENST00000316752|PUS10	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.780029296875	2	487.736137	973.457721	0.61151	0.00029825	-0.65066	-0.00031735	-0.039158	-1.9099E-05	487.73566310480857	72.066	1.3604	69.558	68.805	70.165	-2.5071					43	25	3	0	0	0	0.027455	1	5881	5881		42.396	0	1	33957	+		48146	20792	39918	39945	51669	51669					-0.030069497784779742
RGEGRQASP	9	Unmodified	_RGEGRQASP_					0	0	0		ENSG00000226321|ENST00000690015|CROCC2	ENSG00000226321|ENST00000690015|CROCC2	ENSG00000226321|ENST00000690015|CROCC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.782958984375	2	479.246672	956.478791	0.1504	7.2081E-05	1.7847	0.00085529	1.9351	0.00092737	479.24754836939564	83.5	1.4365	80.837	80.339	81.776	-2.6629					56	29	3	0	0	0	0.027403	1	6895	6895		51.193	11.135	1	115750			48147	9270	39919	39946	51670	51670					-0.0011893967895275637
RGEKKMRI	8	Unmodified	_RGEKKMRI_					0	0	0		ENST00000525032.1_1_11:105481676-105732994:+|nuORF	ENST00000525032.1_1_11:105481676-105732994:+|nuORF	ENST00000525032.1_1_11:105481676-105732994:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.3106384277344	2	509.302936	1016.59132	1.296	0.00066007	2.9508	0.0015029	4.2468	0.0021629	509.30441509886106	119.47	0.592	119.47	119.19	119.79	0					24	14	2	0	0	0	0.028476	1	13737	13737		21.96	4.5949	1	285150			48148	13177	39920	39947	51671	51671					0.08368617793530575
RGELDELPT	9	Unmodified	_RGELDELPT_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.3114624023438	2	515.264196	1028.51384	-1.1232	-0.00057875	1.7136	0.00088294	0.59034	0.00030418	515.2652446588119	54.25	1.7393	51.002	49.854	51.593	-3.2474					56	33	3	0	0	0	0.027433	1	3323	3323		60.972	11.53	1	82337	+		48149	21314	39921	39948	51672	51672					0.0007225833833217621
RGEQKDIGW	9	Unmodified	_RGEQKDIGW_					0	0	0		tr|A0A553SIW8|A0A553SIW8_NIACIPeptidechainreleasefactor2OS=NialliacirculansOX=1397GN=prfBPE=3SV=1	tr|A0A553SIW8|A0A553SIW8_NIACIPeptidechainreleasefactor2OS=NialliacirculansOX=1397GN=prfBPE=3SV=1	tr|A0A553SIW8|A0A553SIW8_NIACIPeptidechainreleasefactor2OS=NialliacirculansOX=1397GN=prfBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	544.7777709960938	2	544.777805	1087.54106	1.5844	0.00086316	1.4005	0.00076293	2.9849	0.0016261	544.7783465181305	61.638	1.529	58.569	57.997	59.526	-3.0685					84	39	3	0	0	0	0.63422	1	2147	2147		27.882	1.1893	1	38046			48150	33435	39922	39949	51673	51673					0.0007878666938267997
RGETAGPAL	9	Unmodified	_RGETAGPAL_					0	0	0		ENST00000405737.2_2_13:41556342-41635296:-|nuORF	ENST00000405737.2_2_13:41556342-41635296:-|nuORF	ENST00000405737.2_2_13:41556342-41635296:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	436.2532958984375	2	436.235242	870.45593	-0.17213	-7.509E-05	2.3591	0.0010291	2.187	0.00095404	436.23546492502584	36.871	0.90091	36.871	36.397	37.298	0					34	19	3	0	0	0	0.027433	1	2005	2005		26.693	0	1	73501			48151	11470	39923	39950	51674	51674					0.01552041203558474
RGETFLVP	8	Unmodified	_RGETFLVP_					0	0	0		ENST00000301740.12_1_16:2802462-2802633:+|nuORF	ENST00000301740.12_1_16:2802462-2802633:+|nuORF	ENST00000301740.12_1_16:2802462-2802633:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.7776184082031	2	459.75581	917.497067	-1.1826	-0.00054373	-3.415	-0.0015701	-4.5977	-0.0021138	459.75411108595785	54.043	1.1262	50.796	50.364	51.491	-3.2474					44	21	4	0	0	0	0.028476	1	3388	3388		55.504	19.886	1	172900			48152	10189	39924	39951	51675	51675					0.035018022430335805
RGETFLVP	8	Unmodified	_RGETFLVP_					0	0	0		ENST00000301740.12_1_16:2802462-2802633:+|nuORF	ENST00000301740.12_1_16:2802462-2802633:+|nuORF	ENST00000301740.12_1_16:2802462-2802633:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	459.75581	917.497067	-0.82947	-0.00038135	-3.9172	-0.001801	-4.7467	-0.0021823	459.7538697187135	53.876	0.79621	51.062	50.677	51.473	-2.8139	0.13321	-0.00027104	NaN	55.504	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42994			48153	10189	39924	39951							0.035018022430335805
RGETLVLVV	9	Unmodified	_RGETLVLVV_					0	0	0			REV__tr|A0A553SH25|A0A553SH25_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_12015PE=3SV=1	REV__tr|A0A553SH25|A0A553SH25_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_12015PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.8216552734375	2	493.305667	984.596781	-0.53617	-0.0002645	-0.34044	-0.00016794	-0.87661	-0.00043244	493.30600586463925	69.891	0.5349	66.41	66.153	66.688	-3.4812					12	10	2	0	0	0	0.027462	1	5255	5255		34.173	8.7224	1	22795	+		48154	29767	39925	39952	51676	51676					0.10386619857001733
RGFAKYSGR	9	Unmodified	_RGFAKYSGR_					0	0	0			REV__ENST00000451813.6_2_20:33637759-33642782:-|nuORF	REV__ENST00000451813.6_2_20:33637759-33642782:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.3118286132812	2	521.283057	1040.55156	1.7535	0.00091407	-2.5957	-0.0013531	-0.84222	-0.00043903	521.2829899189892	80.029	0.82141	80.029	79.666	80.487	0					37	19	3	0	0	0	0.027462	1	8230	8230		26.693	2.4902	1	916680	+		48155	25973	39926	39953	51677	51677					0.03290814114461682
RGFGGKFGV	9	Unmodified	_RGFGGKFGV_					0	0	0		nc|ENSG00000085733|Q14247-3|CTTN;ENSG00000085733|ENST00000301843|CTTN;nc|ENSG00000085733|Q14247-2|CTTN;ENST00000415461.2_1_11:70253665-70266006:+|nuORF	nc|ENSG00000085733|Q14247-3|CTTN	nc|ENSG00000085733|Q14247-3|CTTN	MULTI-MSMS	OvCa99_classI_Rep5	1	462.7574157714844	2	462.756144	923.497735	-0.20567	-9.5175E-05	0.28774	0.00013315	0.082066	3.7977E-05	462.7561506529704	61.935	1.1515	61.935	61.665	62.816	0					70	27	4	0	0	0	0.14739	1	5477	5477		85.359	32.008	1	8337100			48156	1737	39927	39954	51678	51678					0.03292641682753583
RGFLAPQL	8	Unmodified	_RGFLAPQL_					0	0	0		ENST00000359878.7_1_2:201374367-201374727:-|nuORF	ENST00000359878.7_1_2:201374367-201374727:-|nuORF	ENST00000359878.7_1_2:201374367-201374727:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	451.2786560058594	2	451.266345	900.518136	2.4026	0.0010842	-0.41524	-0.00018738	1.9873	0.00089682	451.266099502826	110.7	0.24731	110.56	110.34	110.58	-0.13961					5	4	2	0	0	0	0.028476	1	10419	10419		71.378	16.613	1	9415.7			48157	10761	39928	39955	51679	51679					0.06389812342570167
RGFLPIHG	8	Unmodified	_RGFLPIHG_					0	0	0		tr|A0A7D6W3A1|A0A7D6W3A1_9CLOTPhosphoenolpyruvatecarboxykinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09145PE=4SV=1	tr|A0A7D6W3A1|A0A7D6W3A1_9CLOTPhosphoenolpyruvatecarboxykinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09145PE=4SV=1	tr|A0A7D6W3A1|A0A7D6W3A1_9CLOTPhosphoenolpyruvatecarboxykinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09145PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	449.27459716796875	2	448.758687	895.502821	-0.35497	-0.0001593	4.3619	0.0019574	4.0069	0.0017981	448.7613948114697	93.146	0.25098	90.639	90.463	90.714	-2.5072					5	4	2	0	0	0	0.028476	1	8108	8108		23.037	7.3949	1	4506.9			48158	35449	39929	39956	51680	51680					0.05088945545367096
RGFLVESVDV	10	Unmodified	_RGFLVESVDV_					0	0	0			REV__ENSG00000141337|ENST00000621439|ARSG	REV__ENSG00000141337|ENST00000621439|ARSG	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.8208618164062	2	560.803488	1119.59242	3.4226	0.0019194	-1.9206	-0.0010771	1.502	0.00084235	560.8024544057921	97.29	0.72853	97.29	96.838	97.566	0					34	16	3	0	0	0	0.026653	1	10624	10624		49.536	3.0793	1	809270	+		48159	19727	39930	39957	51681	51681					0.03741110643431966
RGFNIFTLYK	10	Unmodified	_RGFNIFTLYK_					0	0	0		nc|ENSG00000189013|Q99706-5|KIR2DL4;nc|ENSG00000189013|Q99706-4|KIR2DL4;ENSG00000189013|ENST00000345540|KIR2DL4;nc|ENSG00000189013|Q99706-2|KIR2DL4;nc|ENSG00000189013|Q99706|KIR2DL4	nc|ENSG00000189013|Q99706-5|KIR2DL4	nc|ENSG00000189013|Q99706-5|KIR2DL4	MULTI-MSMS	OvCa9_classI_Rep3	3	629.8494873046875	2	629.850773	1257.68699	-0.69016	-0.0004347	-3.1451	-0.0019809	-3.8353	-0.0024156	629.8483567605704	92.117	2.5423	90.093	89.534	92.076	-2.0241					118	51	3	0	0	0	0.42298	1	5809	5809		62.107	19.243	1	1135500			48160	8526	39931	39958	51682	51682					0.06845669185418046
RGFVKTVAL	9	Unmodified	_RGFVKTVAL_					0	0	0			REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B	REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B	MULTI-MSMS	OvCa9_classI_Rep2	2	495.8065490722656	2	495.808377	989.6022	-1.6284	-0.00080736	-2.787	-0.0013818	-4.4154	-0.0021892	495.8069614829561	143.45	1.4815	143.22	142.7	144.19	-0.22696					60	29	3	0	0	0	0.69895	1	14403	14403		18.324	0	1	72131	+		48161	17017	39932	39959	51683	51683					0.10698343439469227
RGFVKTVAL	9	Unmodified	_RGFVKTVAL_					0	0	0			REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B	REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B	MULTI-MSMS	OvCa9_classI_Rep3	3	495.805908203125	2	495.808377	989.6022	-3.0687	-0.0015215	-1.3757	-0.00068209	-4.4444	-0.0022036	495.80768519755566	143.85	1.3844	142.86	142.49	143.87	-0.9903					67	27	4	0	0	0	0.55588	1	11995	11995		37.159	7.3176	1	103180	+		48162	17017	39932	39959	51684	51684					0.10698343439469227
RGFWLSQWK	9	Unmodified	_RGFWLSQWK_					0	0	0		ENST00000475773.5_1_1:29520536-29527072:-|nuORF;nc|ENSG00000116353|Q9BV79-2|MECR;ENSG00000116353|ENST00000263702|MECR	ENST00000475773.5_1_1:29520536-29527072:-|nuORF	ENST00000475773.5_1_1:29520536-29527072:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.928955078125	3	403.217214	1206.62981	0.8971	0.00036173	-3.449	-0.0013907	-2.5519	-0.001029	403.21574006792804	51.69	0.36677	51.69	51.504	51.871	0					18	8	3	0	0	0	0.027462	1	4024	4024		41.427	6.2484	1	425500			48163	3176	39933	39960	51685	51685					0.0347624669968809
RGGALAPLRRG	11	Unmodified	_RGGALAPLRRG_					0	0	0			REV__ENST00000550208.1_1_14:105714663-105714873:-|nuORF	REV__ENST00000550208.1_1_14:105714663-105714873:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3436279296875	2	562.343981	1122.67341	1.2434	0.00069921	-2.2131	-0.0012445	-0.96974	-0.00054533	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.72459	1	14056	14056		20.947	0	1	683710	+		48164	27468	39934	39961	51686	51686					0.11697856196815337
RGGAPLRRA	9	Unmodified	_RGGAPLRRA_					0	0	0			REV__ENST00000566525.5_1_16:770887-771532:+|nuORF	REV__ENST00000566525.5_1_16:770887-771532:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.9405517578125	2	477.291217	952.567881	-0.562	-0.00026824	3.4038	0.0016246	2.8418	0.0013564	477.29251372562766	45.893	1.0462	42.821	42.352	43.398	-3.0724					25	19	2	0	0	0	0.027441	1	2405	2405		29.15	7.1897	1	36559	+		48165	27703	39935	39962	51687	51687					0.08969940071222027
RGGEAYSFGLL	11	Unmodified	_RGGEAYSFGLL_					0	0	0			REV__tr|A0A553STV5|A0A553STV5_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_05740PE=3SV=1	REV__tr|A0A553STV5|A0A553STV5_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_05740PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	585.2987670898438	2	585.301113	1168.58767	-7.0104	-0.0041032	0.89442	0.00052351	-6.1159	-0.0035797	585.3015332240002	160.22	1.9597	158.61	158.24	160.2	-1.6101					84	45	2	0	0	0	0.65947	1	15800	15800		39.253	2.8061	1	141830	+		48166	31015	39936	39963	51688	51688					0.010122265006657472
RGGGFKGNDD	10	Unmodified	_RGGGFKGNDD_					0	0	0		nc|ENSG00000102081|Q06787-8|FMR1;nc|ENSG00000102081|Q06787-6|FMR1;nc|ENSG00000102081|Q06787-2|FMR1;nc|ENSG00000102081|Q06787-4|FMR1;nc|ENSG00000102081|Q06787-5|FMR1;nc|ENSG00000102081|Q06787-9|FMR1;nc|ENSG00000102081|Q06787-7|FMR1;nc|ENSG00000102081|Q06787-3|FMR1;ENSG00000102081|ENST00000370475|FMR1;ENST00000478848.1_1_X:147026492-147027163:+|nuORF	nc|ENSG00000102081|Q06787-8|FMR1	nc|ENSG00000102081|Q06787-8|FMR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.7901306152344	2	511.736137	1021.45772	0.75472	0.00038622	4.0283	0.0020614	4.783	0.0024476	511.7377833420899	140.61	0.2617	139.12	138.95	139.22	-1.4952					6	4	2	0	0	0	0.026968	1	13716	13716		29.17	8.2231	1	7723			48167	2221	39937	39964	51689	51689					-0.05214949778485334
RGGGFKYTS	9	Unmodified	_RGGGFKYTS_					0	0	0			REV__tr|A0A553SPL6|A0A553SPL6_NIACIPeptidaseOS=NialliacirculansOX=1397GN=CEQ21_26650PE=3SV=1	REV__tr|A0A553SPL6|A0A553SPL6_NIACIPeptidaseOS=NialliacirculansOX=1397GN=CEQ21_26650PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.2914733886719	2	486.748516	971.482479	-0.012097	-5.8881E-06	2.0752	0.0010101	2.0631	0.0010042	486.74956012439895	47.112	0.70755	44.039	43.81	44.517	-3.0724					25	13	2	0	0	0	0.027462	1	2497	2497		45.952	12.436	1	39507	+		48168	30547	39938	39965	51690	51690					-0.004402699051070158
RGGGLRLRF	9	Unmodified	_RGGGLRLRF_					0	0	0			REV__ENST00000310421.4_1_8:67579238-67579442:-|nuORF	REV__ENST00000310421.4_1_8:67579238-67579442:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.2432250976562	2	516.314692	1030.61483	-1.0761	-0.00055562	-0.74046	-0.00038231	-1.8166	-0.00093793	516.3141875944543	51.52	1.14	48.707	48.403	49.543	-2.8129					42	22	3	0	0	0	0.027462	1	3469	3469		23.042	4.7181	1	84117	+		48169	24340	39939	39966	51691	51691					0.10074799622361752
RGGHVDLTML	10	Unmodified	_RGGHVDLTML_					0	0	0		ENSG00000083720|ENST00000196371|OXCT1	ENSG00000083720|ENST00000196371|OXCT1	ENSG00000083720|ENST00000196371|OXCT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.2547607421875	2	549.789858	1097.56516	0.62318	0.00034262	1.3211	0.00072632	1.9443	0.0010689	549.7904516366648	140.14	0.71002	140.14	139.92	140.63	0					28	14	3	0	0	0	0.026688	1	16352	16352		49.442	13.823	1	178210			48170	1698	39940	39967	51692	51692					0.020283038313891666
RGGLRQRAPL	10	Unmodified	_RGGLRQRAPL_					0	0	0			REV__ENST00000389960.8_1_11:85469149-85522057:-|nuORF	REV__ENST00000389960.8_1_11:85469149-85522057:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3455200195312	2	562.343981	1122.67341	2.5554	0.001437	-3.6335	-0.0020433	-1.0782	-0.0006063	562.341833951132	139.43	3.4203	137.93	136.47	139.89	-1.4952					166	69	3	0	0	0	0.71192	1	13554	13554		29.15	0	1	141360	+		48171	25234	39941	39968	51693	51693					0.11697856196815337
RGGNVGINSF	10	Unmodified	_RGGNVGINSF_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.7646179199219	2	510.764697	1019.51484	-1.1759	-0.0006006	0.71757	0.00036651	-0.45832	-0.00023409	510.76498418991224	42.625	1.2582	39.644	39.41	40.668	-2.9804					60	23	3	0	0	0	0.39172	1	1989	1989		69.628	3.8245	1	688700			48172	7034	39942	39969	51694	51694					0.00586517497913519
RGGPAPPR	8	Unmodified	_RGGPAPPR_					0	0	0		ENSG00000134508.12,CABLES1,chr18,+,I2.1,23135546,23135762|322|30.13|2|intron;ENSG00000134508.12,CABLES1,chr18,+,I2.1,23135546,23135762|322|30.13|1|intron	ENSG00000134508.12,CABLES1,chr18,+,I2.1,23135546,23135762|322|30.13|2|intron	ENSG00000134508.12,CABLES1,chr18,+,I2.1,23135546,23135762|322|30.13|2|intron	MULTI-MSMS	OvCa9_classI_Rep2	2	404.23248291015625	2	404.232836	806.45112	1.3505	0.00054594	-1.1916	-0.00048169	0.15893	6.4246E-05	404.23224424215823	134.98	1.1763	134.75	134.34	135.52	-0.22696					59	23	3	0	0	0	0.75661	1	13362	13362		19.36	0	1	117390			48173	4303	39943	39970	51695	51695					0.04015201851461825
RGGPPGGGR	9	Unmodified	_RGGPPGGGR_					0	0	0		ENST00000395040.6_1_19:3786173-3786290:-|nuORF	ENST00000395040.6_1_19:3786173-3786290:-|nuORF	ENST00000395040.6_1_19:3786173-3786290:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	405.7181396484375	2	405.720093	809.425633	-0.3042	-0.00012342	-2.914	-0.0011823	-3.2182	-0.0013057	405.7187689414806	119.3	1.6269	119.13	118.76	120.38	-0.17137					76	32	4	0	0	0	0.51865	4	11469	11469;11481;11487;11500		40.778	6.1799	1	350390			48174	11281	39944	39971	51696;51697;51698;51699	51696					0.013297273290504563
RGGPPGGGR	9	Unmodified	_RGGPPGGGR_					0	0	0		ENST00000395040.6_1_19:3786173-3786290:-|nuORF	ENST00000395040.6_1_19:3786173-3786290:-|nuORF	ENST00000395040.6_1_19:3786173-3786290:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	405.7187194824219	2	405.720093	809.425633	0.46862	0.00019013	-3.7729	-0.0015307	-3.3043	-0.0013406	405.71843883907457	120.34	1.7473	119	118.72	120.47	-1.3444					77	33	4	0	0	0	0.62352	1	11302	11302		29.15	3.6994	1	591240			48175	11281	39944	39971	51700	51700					0.013297273290504563
RGGPSPPQRS	10	Unmodified	_RGGPSPPQRS_					0	0	0			REV__SVA_C_dup306|chr11:76581923-76583356:-|1.005766169199819|0.0397377111360499|4.66|411.0|30|3|sense	REV__SVA_C_dup306|chr11:76581923-76583356:-|1.005766169199819|0.0397377111360499|4.66|411.0|30|3|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.3334350585938	2	519.775597	1037.53664	-1.2833	-0.00066705	3.7925	0.0019713	2.5092	0.0013042	519.7774338688835	73.302	1.243	69.906	69.591	70.834	-3.3961					41	25	2	0	0	0	0.026906	1	5733	5733		27.047	0	1	85684	+		48176	29474	39945	39972	51701	51701					0.019373222464764694
RGGQAGIALYF	11	Unmodified	_RGGQAGIALYF_					0	0	0			REV__tr|A0A7D6ZRE2|A0A7D6ZRE2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12335PE=4SV=1	REV__tr|A0A7D6ZRE2|A0A7D6ZRE2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12335PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	576.353271484375	2	576.811648	1151.60874	-0.42533	-0.00024533	0.079705	4.5975E-05	-0.34562	-0.00019936	576.8116779475117	71.602	0.99717	69	68.331	69.328	-2.6023					37	19	3	0	0	0	0.025597	1	3389	3389		60.118	20.06	1	42422	+		48177	32156	39946	39973	51702	51702					0.03900236600156859
RGGQGARGGQ	10	Unmodified	_RGGQGARGGQ_					0	0	0		ENST00000585590.1_1_18:11689747-11702085:+|nuORF;ENST00000334049.10_1_18:11689618-11752858:+|nuORF	ENST00000585590.1_1_18:11689747-11702085:+|nuORF	ENST00000585590.1_1_18:11689747-11702085:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.24420166015625	2	472.244464	942.474374	-0.13588	-6.4169E-05	1.9941	0.00094169	1.8582	0.00087752	472.2453835466267	53.944	0.35931	50.696	50.568	50.927	-3.2474					8	6	2	0	0	0	0.026849	1	3316	3316		25.574	0	1	22546			48178	10474	39947	39974	51703	51703					0.0008359589814972423
RGGRKLPLRV	10	Unmodified	_RGGRKLPLRV_					0	0	0		ENST00000557128.1_1_14:50159959-50192429:+|nuORF;ENST00000555704.5_1_14:50159830-50218487:+|nuORF	ENST00000557128.1_1_14:50159959-50192429:+|nuORF	ENST00000557128.1_1_14:50159959-50192429:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	576.3546752929688	2	576.377823	1150.74109	-1.623	-0.00093544	-2.0768	-0.001197	-3.6997	-0.0021324	576.3757875406116	73.136	0.19328	69.74	69.64	69.833	-3.3961					5	3	2	0	0	0	0.026665	1	5647	5647		42.396	0	1	14837			48179	13650	39948	39975	51704	51704					0.1717530612761493
RGGRNGPP	8	Unmodified	_RGGRNGPP_					0	0	0		SRSF9|p.R108T|1|0.26|ENSG00000111786|chr12:120465653-120465653|C/G|missense_variant;ENSG00000111786|ENST00000229390|SRSF9	SRSF9|p.R108T|1|0.26|ENSG00000111786|chr12:120465653-120465653|C/G|missense_variant	SRSF9|p.R108T|1|0.26|ENSG00000111786|chr12:120465653-120465653|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	405.7182922363281	2	405.720093	809.425633	-0.3042	-0.00012342	-2.914	-0.0011823	-3.2182	-0.0013057	405.7187689414806	119.3	1.6269	119.13	118.76	120.38	-0.17137					76	32	4	0	0	0	0.74679	1	11515	11515		28.254	1.4582	1	350390			48180	2853	39949	39976	51705	51705					0.013297273290390876
RGGRQLDVPGP	11	Unmodified	_RGGRQLDVPGP_					0	0	0			REV__ENST00000471706.1_1_1:145457217-145470350:-|nuORF	REV__ENST00000471706.1_1_1:145457217-145470350:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	576.35400390625	2	576.317628	1150.6207	-0.50543	-0.00029129	-1.9781	-0.00114	-2.4835	-0.0014313	576.3161574133462	72.593	1.356	70.193	69.436	70.792	-2.3999					39	25	2	0	0	0	0.02568	1	5805	5805		59.931	6.5793	1	24551	+		48181	26290	39950	39977	51706	51706					0.051418533433889024
RGGRSGGGPPN	11	Unmodified	_RGGRSGGGPPN_					0	0	0		ENSG00000204569|ENST00000376511|PPP1R10	ENSG00000204569|ENST00000376511|PPP1R10	ENSG00000204569|ENST00000376511|PPP1R10	MULTI-MSMS	OvCa99_classI_Rep5	1	506.25701904296875	2	506.257571	1010.50059	0.80727	0.00040869	-3.2648	-0.0016528	-2.4575	-0.0012441	506.25576650571276	141.9	0.85002	141.9	141.54	142.39	0					36	16	3	0	0	0	0.69735	1	16593	16593		30.569	1.4193	1	185070			48182	9003	39951	39978	51707	51707					-0.0042413493036974614
RGIELTLQI	9	Unmodified	_RGIELTLQI_					0	0	0		nc|ENSG00000176974|P34896-4|SHMT1;nc|ENSG00000176974|P34896-3|SHMT1;nc|ENSG00000176974|P34896-2|SHMT1;ENSG00000176974|ENST00000316694|SHMT1	nc|ENSG00000176974|P34896-4|SHMT1	nc|ENSG00000176974|P34896-4|SHMT1	MULTI-MSMS	OvCa99_classI_Rep5	1	521.8175659179688	2	521.816399	1041.61824	1.2094	0.00063107	0.31391	0.0001638	1.5233	0.00079488	521.8164249772677	116.93	1.1506	116.93	116.64	117.79	0					46	24	3	0	0	0	0.38969	1	13391	13391		52.937	3.4007	1	447700			48183	7645	39952	39979	51708	51708					0.09910004885705348
RGIFRVVPQ	9	Unmodified	_RGIFRVVPQ_					0	0	0		nc|ENSG00000148600|Q96JP9-2|CDHR1;ENSG00000148600|ENST00000623527|CDHR1	nc|ENSG00000148600|Q96JP9-2|CDHR1	nc|ENSG00000148600|Q96JP9-2|CDHR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.288330078125	2	536.324725	1070.6349	2.5341	0.0013591	-1.3295	-0.00071307	1.2046	0.00064606	536.3242429686056	116.25	1.2048	116.25	115.16	116.37	0					45	25	2	0	0	0	0.027462	1	13306	13306		27.882	0	1	143870			48184	15082	39953	39980	51709	51709					0.10240550562321005
RGIIPQAPL	9	Unmodified	_RGIIPQAPL_					0	0	0		ENSG00000171408|ENST00000308191|PDE7B	ENSG00000171408|ENST00000308191|PDE7B	ENSG00000171408|ENST00000308191|PDE7B	MULTI-SECPEP	OvCa9_classI_Rep2	2	482.28436279296875	2	482.800552	963.58655	1.5174	0.0007326	-2.6201	-0.001265	-1.1027	-0.00053238	482.7990979720412	88.511	0.98444	87.143	86.888	87.873	-1.3676					32	19	2	0	0	0	0.027462	1	7812	7812		30.504	0	1	42940			48185	7193	39954	39981	51710	51710					0.10330056922407493
RGIISALLV	9	Unmodified	_RGIISALLV_					0	0	0		APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB;APOB|p.N3224Tfs*50|1|0.31|ENSG00000084674|chr2:21007197-21007198|-/CTTCTTCATATTCTGCACTGAAG|frameshift_variant;APOB|p.P1331Gfs*27|1|0.03|ENSG00000084674|chr2:21013386-21013387|-/CA|frameshift_variant;APOB|p.S1889Afs*52|1|0.08|ENSG00000084674|chr2:21011204-21011205|-/GGGCTTCTCAACGGCATCTCTCATCTCTAAAGCA|frameshift_variant;APOB|p.S1969Rfs*50|1|0.08|ENSG00000084674|chr2:21010961-21010962|-/GC|frameshift_variant;APOB|p.E535Ffs*4|1|0.02|ENSG00000084674|chr2:21029653-21029654|-/AATTAGAAAA|frameshift_variant	APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant	APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	471.31060791015625	2	471.310752	940.606951	-1.3467	-0.0006347	0.9748	0.00045943	-0.37187	-0.00017526	471.31115558776486	33.805	2.3785	31.096	30.823	33.201	-2.7097					116	47	5	0	0	0	0.61208	1	1313	1313		30.504	2.6214	1	1913400			48186	102	39955	39982	51711	51711					0.13427227582235446
RGIIYSEFI	9	Unmodified	_RGIIYSEFI_					0	0	0		tr|A0A553SNZ3|A0A553SNZ3_NIACITranscriptiontermination/antiterminationproteinNusAOS=NialliacirculansOX=1397GN=nusAPE=3SV=1	tr|A0A553SNZ3|A0A553SNZ3_NIACITranscriptiontermination/antiterminationproteinNusAOS=NialliacirculansOX=1397GN=nusAPE=3SV=1	tr|A0A553SNZ3|A0A553SNZ3_NIACITranscriptiontermination/antiterminationproteinNusAOS=NialliacirculansOX=1397GN=nusAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	549.3042602539062	2	549.303124	1096.5917	-0.36233	-0.00019903	0.057917	3.1814E-05	-0.30441	-0.00016721	549.3030294617095	131.39	0.83014	130.27	130.01	130.84	-1.1249					30	16	2	0	0	0	0.56889	1	10475	10475		35.618	1.4457	1	63952			48187	33984	39956	39983	51712	51712					0.04726315994366814
RGILRQIE	8	Unmodified	_RGILRQIE_					0	0	0			REV__tr|A0A7D6VUC2|A0A7D6VUC2_9CLOTRibonucleasePHOS=ClostridiumintestinaleOX=36845GN=rphPE=3SV=1	REV__tr|A0A7D6VUC2|A0A7D6VUC2_9CLOTRibonucleasePHOS=ClostridiumintestinaleOX=36845GN=rphPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	492.8008117675781	2	492.801083	983.587613	-0.24793	-0.00012218	-0.089465	-4.4088E-05	-0.33739	-0.00016627	492.8009419082902	56.6	1.5858	53.796	53.175	54.761	-2.804					103	31	4	0	0	0	0.74229	1	4001	4001		30.504	0	1	477380	+		48188	31668	39957	39984	51713	51713					0.09516271291317935
RGIRNRVF	8	Unmodified	_RGIRNRVF_					0	0	0			REV__ENSG00000152104|ENST00000366956|PTPN14	REV__ENSG00000152104|ENST00000366956|PTPN14	MULTI-MSMS	OvCa9_classI_Rep2	2	509.3055725097656	2	509.306867	1016.59918	-2.5875	-0.0013179	1.0086	0.00051367	-1.579	-0.00080418	509.30726434734663	146.58	1.0992	146.36	145.97	147.07	-0.22696					49	21	3	0	0	0	0.75241	1	14802	14802		25.45	0	1	49197	+		48189	20270	39958	39985	51714	51714					0.09154513105318074
RGISASLALSA	11	Unmodified	_RGISASLALSA_					0	0	0			REV__ENSG00000130702|ENST00000252999|LAMA5	REV__ENSG00000130702|ENST00000252999|LAMA5	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3031005859375	2	523.303655	1044.59276	-2.1228	-0.0011108	2.0352	0.001065	-0.087543	-4.5811E-05	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.68021	1	11430	11430		36.447	11.928	1	183010	+		48190	18961	39959	39986	51715	51715					0.07224530363282611
RGISGSIGVVA	11	Unmodified	_RGISGSIGVVA_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;HECTD4|p.P3258Rfs*65|1|0.06|ENSG00000173064|chr12:112184791-112184792|-/C|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-2|HECTD4;HECTD4|p.R2204Ffs*29|1|0.3|ENSG00000173064|chr12:112219449-112219450|-/TGTTATGAAACTGACTGTATCTCTAAACTTAAAA|frameshift_variant	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-MSMS	OvCa99_classI_Rep5	1	508.2992858886719	2	508.298373	1014.58219	-0.36002	-0.000183	-0.77909	-0.00039601	-1.1391	-0.00057901	508.29832358903644	24.049	0.53824	24.049	23.748	24.287	0					27	10	4	0	0	0	0.71498	1	420	420		24.519	0.99649	1	221270			48191	7345	39960	39987	51716	51716					0.07548547708859132
RGKAQVIMI	9	Unmodified	_RGKAQVIMI_					0	0	0			REV__nc|ENSG00000141867|O60885-2|BRD4	REV__nc|ENSG00000141867|O60885-2|BRD4	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.31365966796875	2	508.307687	1014.60082	0.11688	5.9413E-05	1.309	0.00066536	1.4258	0.00072477	508.307496063142	106.29	0.72684	105.02	104.8	105.53	-1.267					22	13	2	0	0	0	0.027462	1	7512	7512		33.516	6.7195	1	30626	+		48192	19760	39961	39988	51717	51717					0.09410386079036925
RGKELLGFV	9	Unmodified	_RGKELLGFV_					0	0	0		ENST00000482953.5_1_21:42762449-42780157:+|nuORF;ENSG00000183486|ENST00000330714|MX2;ENST00000474368.1_1_21:42773880-42775423:+|nuORF	ENST00000482953.5_1_21:42762449-42780157:+|nuORF	ENST00000482953.5_1_21:42762449-42780157:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	509.80279541015625	2	509.805834	1017.59712	NaN	NaN	NaN	NaN	NaN	NaN	NaN	157.53	1	155.98	155.48	156.48	-1.545								0	0	0	0.18309	1	15571	15571		30.504	7.4612	1				48193	8078	39962	39989	51718	51718					0.08902039576855714
RGKMRDSRT	9	Unmodified	_RGKMRDSRT_					0	0	0			REV__ENST00000579295.1_1_1:213037039-213043480:+|nuORF	REV__ENST00000579295.1_1_1:213037039-213043480:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.803466796875	2	553.796006	1105.57746	-0.83528	-0.00046257	-3.7939	-0.002101	-4.6292	-0.0025636	553.7935192074493	42.73	0.26218	39.722	39.591	39.853	-3.0074					6	4	2	0	0	0	0.027462	1	1993	1993		45.972	0	1	6212.8	+		48194	27812	39963	39990	51719	51719					0.028893402944277113
RGKPLLLSA	9	Unmodified	_RGKPLLLSA_					0	0	0		ENSG00000104976|ENST00000221573|SNAPC2	ENSG00000104976|ENST00000221573|SNAPC2	ENSG00000104976|ENST00000221573|SNAPC2	MULTI-MSMS	OvCa9_classI_Rep3	3	477.8072509765625	2	477.808377	953.6022	1.9488	0.00093115	-1.9172	-0.00091603	0.031633	1.5115E-05	477.8073051342162	64.159	1.1625	61.166	60.836	61.999	-2.9933					49	22	3	0	0	0	0.59983	1	2499	2499		31.955	0	1	160040			48195	2414	39964	39991	51720	51720					0.12354343439460536
RGKQGLFPNN	10	Unmodified	_RGKQGLFPNN_					0	0	0		ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	ENSG00000157483|ENST00000288235|MYO1E	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.818115234375	2	565.806897	1129.59924	2.3909	0.0013528	-1.3173	-0.00074533	1.0736	0.00060743	566.3081569167283	85.908	0.28912	85.908	85.705	85.994	0					8	6	2	0	0	0	0.026802	1	9036	9036		34.173	2.2177	1	140410			48196	5894	39965	39992	51721	51721					0.039624683146712414
RGKSWAGLEL	10	Unmodified	_RGKSWAGLEL_					0	0	0		ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	ENSG00000010319|ENST00000231721|SEMA3G	MULTI-MSMS	OvCa99_classI_Rep5	1	558.8070678710938	2	558.811648	1115.60874	-0.12778	-7.1406E-05	-3.2481	-0.0018151	-3.3759	-0.0018865	558.8096032546082	25.019	0.30395	25.019	24.888	25.192	0					9	5	3	0	0	0	0.62299	1	522	522		39.253	1.4413	1	39196			48197	943	39966	39993	51722	51722					0.055562366001595365
RGKVRSAPPR	10	Unmodified	_RGKVRSAPPR_					0	0	0		ENST00000409031.5_3_2:130939329-130940025:-|nuORF	ENST00000409031.5_3_2:130939329-130940025:-|nuORF	ENST00000409031.5_3_2:130939329-130940025:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	562.3421020507812	2	562.343981	1122.67341	-2.9015	-0.0016316	1.6805	0.00094503	-1.221	-0.00068662	562.3448419475409	142.33	4.504	141.32	140	144.5	-1.0106					205	90	3	0	0	0	0.74374	1	11797	11797		25.574	2.5316	1	106680			48198	11511	39967	39994	51723	51723					0.11697856196815337
RGLAGTLHSP	10	Unmodified	_RGLAGTLHSP_					0	0	0			REV__ENST00000320631.7_1_11:64620623-64620911:-|nuORF	REV__ENST00000320631.7_1_11:64620623-64620911:-|nuORF	MSMS	OvCa99_classI_Rep5	1	504.7833557128906	2	504.78289	1007.55123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	44.032	1	44.032	43.532	44.532	0								0	0	0	0.14376	1	2951	2951		51.193	1.1682	1		+		48199	24442	39968	39995	51724	51724					0.047753943946077015
RGLAILCLT	9	Unmodified	_RGLAILCLT_					0	0	0			REV__ENSG00000139572|ENST00000267015|GPR84	REV__ENSG00000139572|ENST00000267015|GPR84	MULTI-SECPEP	OvCa9_classI_Rep3	3	479.3200378417969	2	480.288963	958.563372	-0.55167	-0.00026496	2.4346	0.0011693	1.8829	0.00090435	480.2899003634888	100.87	2.037	99.263	98.565	100.6	-1.6053					58	39	2	0	0	0	0.027455	1	6917	6917		34.173	0.65696	1	128570	+		48200	19618	39969	39996	51725	51725					0.08243294813416924
RGLAPIFCYSW	11	Unmodified	_RGLAPIFCYSW_					0	0	0		ENST00000372902.3_1_X:100601327-100601426:-|nuORF	ENST00000372902.3_1_X:100601327-100601426:-|nuORF	ENST00000372902.3_1_X:100601327-100601426:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	438.2479248046875	3	438.221748	1311.64341	-0.93203	-0.00040844	-1.9733	-0.00086474	-2.9053	-0.0012732	438.22010189601247	43.999	0.4473	40.991	40.842	41.289	-3.0074					13	8	2	0	0	0	0.025624	1	2173	2173		45.908	16.357	1	23556			48201	10988	39970	39997	51726	51726					5.736416619583906E-05
RGLARLQL	8	Unmodified	_RGLARLQL_					0	0	0		nc|ENSG00000196408|Q8NFA2-4|NOXO1;ENSG00000196408|ENST00000356120|NOXO1;nc|ENSG00000196408|Q8NFA2-2|NOXO1;nc|ENSG00000196408|Q8NFA2|NOXO1	nc|ENSG00000196408|Q8NFA2-4|NOXO1	nc|ENSG00000196408|Q8NFA2-4|NOXO1	MULTI-MSMS	OvCa9_classI_Rep2	2	463.79779052734375	2	463.798343	925.582134	0.21037	9.7568E-05	-1.0086	-0.0004678	-0.79827	-0.00037024	463.7978667804196	70.561	4.2201	67.99	67.714	71.934	-2.5707					173	80	4	0	0	0	0.75241	1	5718	5718		25.45	0	1	2590100			48202	8602	39971	39998	51727	51727					0.11636592499519338
RGLCHLWKL	9	Unmodified	_RGLCHLWKL_					0	0	0		HERVK22-int_dup405|chr19:23557002-23557849:+|1.08382364310699|0.0263687417948669|5.36|399.0|44|3|anti-sense	HERVK22-int_dup405|chr19:23557002-23557849:+|1.08382364310699|0.0263687417948669|5.36|399.0|44|3|anti-sense	HERVK22-int_dup405|chr19:23557002-23557849:+|1.08382364310699|0.0263687417948669|5.36|399.0|44|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.3199462890625	2	563.321128	1124.6277	-3.5577	-0.0020042	-0.67135	-0.00037819	-4.2291	-0.0023823	563.320611230398	156.14	0.89035	154.65	154.42	155.31	-1.4911					60	28	3	0	0	0	0.48324	2	15455	15448;15455		44.117	5.6293	1	86006			48203	14472	39972	39999	51728;51729	51729					0.0703749469023478
RGLCHLWKL	9	Unmodified	_RGLCHLWKL_					0	0	0		HERVK22-int_dup405|chr19:23557002-23557849:+|1.08382364310699|0.0263687417948669|5.36|399.0|44|3|anti-sense	HERVK22-int_dup405|chr19:23557002-23557849:+|1.08382364310699|0.0263687417948669|5.36|399.0|44|3|anti-sense	HERVK22-int_dup405|chr19:23557002-23557849:+|1.08382364310699|0.0263687417948669|5.36|399.0|44|3|anti-sense	MULTI-MATCH	OvCa99_classI_Rep5	1		2	563.321128	1124.6277	1.4946	0.00084192	-2.1618	-0.0012178	-0.66724	-0.00037587	563.3188820675363	154.57	0.40593	154.57	154.37	154.78	0	-0.061892	-0.0028089	NaN	44.117	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18412			48204	14472	39972	39999							0.0703749469023478
RGLDCFFH	8	Unmodified	_RGLDCFFH_					0	0	0		ENST00000405201.5_1_12:124809264-124809471:-|nuORF	ENST00000405201.5_1_12:124809264-124809471:-|nuORF	ENST00000405201.5_1_12:124809264-124809471:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.8009948730469	2	497.731812	993.449071	-1.2328	-0.00061362	-1.8255	-0.00090862	-3.0583	-0.0015222	497.73081324741264	44.349	0.45745	41.31	41.106	41.564	-3.0385					13	8	2	0	0	0	0.028476	1	2182	2182		13.775	0	1	20716			48205	11461	39973	40000	51730	51730					-0.0479159494865371
RGLDFPRPLST	11	Unmodified	_RGLDFPRPLST_					0	0	0		ENST00000538771.5_1_19:42806829-42806913:-|nuORF;ENST00000595530.5_1_19:42806174-42806913:-|nuORF	ENST00000538771.5_1_19:42806829-42806913:-|nuORF	ENST00000538771.5_1_19:42806829-42806913:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	629.8491821289062	2	629.848761	1257.68297	-0.69016	-0.0004347	0.048321	3.0435E-05	-0.64184	-0.00040426	629.8483567605704	92.117	2.5423	90.093	89.534	92.076	-2.0241					118	51	3	0	0	0	0.34309	1	5822	5822		56.434	17.68	1	1135500			48206	13426	39974	40001	51731	51731					0.06443579691699597
RGLDTYKT	8	Unmodified	_RGLDTYKT_					0	0	0			REV__ENST00000481244.5_1_10:28491134-28569058:-|nuORF	REV__ENST00000481244.5_1_10:28491134-28569058:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	476.7657470703125	2	477.256174	952.497795	0.22211	0.000106	0.504	0.00024054	0.72611	0.00034654	477.25634332778816	62.313	0.45945	62.313	62.081	62.541	0					13	10	2	0	0	0	0.028476	1	5533	5533		21.96	0	1	344070	+		48207	26475	39975	40002	51732	51732					0.01964596892071313
RGLFADLLP	9	Unmodified	_RGLFADLLP_					0	0	0		ENSG00000204839|ENST00000398882|MROH6	ENSG00000204839|ENST00000398882|MROH6	ENSG00000204839|ENST00000398882|MROH6	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2901306152344	2	501.292559	1000.57057	-1.4695	-0.00073667	-2.6975	-0.0013522	-4.167	-0.0020889	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.6653	1	11054	11054		24.203	1.1603	1	97838			48208	9030	39976	40003	51733	51733					0.07030350685522535
RGLFLELGI	9	Unmodified	_RGLFLELGI_					0	0	0			REV__nc|ENSG00000102001|O60840-5|CACNA1F	REV__nc|ENSG00000102001|O60840-5|CACNA1F	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.3041076660156	2	509.30821	1016.60187	-1.8721	-0.00095349	-2.4633	-0.0012546	-4.3354	-0.0022081	509.306823448672	147.28	1.1942	145.84	145.53	146.73	-1.4351					49	23	3	0	0	0	0.6653	1	14470	14470		24.203	0	1	91709	+		48209	17532	39977	40004	51734	51734					0.09422923719591836
RGLFLKEETF	10	Unmodified	_RGLFLKEETF_					0	0	0		nc|ENSG00000151320|Q13023-2|AKAP6;AKAP6|p.S1378Cfs*4|1|0.03|ENSG00000151320|chr14:32821945-32821946|-/GTTATCC|frameshift_variant;AKAP6|p.C1453Wfs*29|1|0.37|ENSG00000151320|chr14:32822170-32822173|TGTT/-|frameshift_variant;ENSG00000151320|ENST00000280979|AKAP6;AKAP6|p.M2317Hfs*14|1|0.04|ENSG00000151320|chr14:32824761-32824762|-/CATGGGAAAGAGATTTCAGAGAGTGAGCATTGTA|frameshift_variant	nc|ENSG00000151320|Q13023-2|AKAP6	nc|ENSG00000151320|Q13023-2|AKAP6	MULTI-MSMS	OvCa9_classI_Rep2	2	620.3392333984375	2	620.340238	1238.66592	-1.0739	-0.00066617	-1.2649	-0.0007847	-2.3388	-0.0014509	620.3394091242254	46.735	2.133	44.025	43.596	45.729	-2.7097					112	42	4	0	0	0	0.57535	1	2814	2814		25.574	3.6142	1	367300			48210	57	39978	40005	51735	51735					0.05613659085884137
RGLGGQRPGAL	11	Unmodified	_RGLGGQRPGAL_					0	0	0			REV__ENST00000481771.5_1_1:155181647-155183486:+|nuORF	REV__ENST00000481771.5_1_1:155181647-155183486:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	541.3153076171875	2	541.314889	1080.61522	-0.15857	-8.5836E-05	0.15928	8.6222E-05	0.0007132	3.8607E-07	541.3147931507731	134.52	0.98869	133.39	133.06	134.05	-1.1226					41	18	3	0	0	0	0.56722	1	10836	10836		47.657	1.7054	1	69775	+		48211	26486	39979	40006	51736	51736					0.0781417455157225
RGLGMHPG	8	Unmodified	_RGLGMHPG_					0	0	0		ENST00000566842.5_1_16:29918195-29922616:-|nuORF	ENST00000566842.5_1_16:29918195-29922616:-|nuORF	ENST00000566842.5_1_16:29918195-29922616:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	412.7149658203125	2	412.713422	823.412291	2.1865	0.00090239	-0.94271	-0.00038907	1.2438	0.00051333	412.7129103733273	119.45	0.98956	119.45	119.19	120.18	0					46	23	3	0	0	0	0.75991	1	13743	13743		21.702	0	1	843960			48212	13852	39980	40007	51737	51737					-0.006478467745637317
RGLGPHSK	8	Unmodified	_RGLGPHSK_					0	0	0		ENSG00000164694|ENST00000297267|FNDC1	ENSG00000164694|ENST00000297267|FNDC1	ENSG00000164694|ENST00000297267|FNDC1	MULTI-MSMS	OvCa9_classI_Rep2	2	426.24591064453125	2	426.245944	850.477334	-0.93249	-0.00039747	1.1012	0.00046937	0.16868	7.1901E-05	426.2463036759244	138.33	1.7168	138.1	137.59	139.3	-0.22696					83	34	3	0	0	0	0.74229	1	13791	13791		30.504	2.2494	1	161940			48213	6478	39981	40008	51738	51738					0.0461147102294035
RGLGSGAGTIL	11	Unmodified	_RGLGSGAGTIL_					0	0	0			REV__nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	REV__nc|ENSG00000170786|Q8N3Y7-2|SDR16C5	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.28936767578125	2	501.290548	1000.56654	1.9923	0.0009987	-2.262	-0.0011339	-0.26972	-0.00013521	501.28921225940996	136.36	2.694	134.82	133.46	136.15	-1.5437					126	54	3	0	0	0	0.69424	1	13219	13219		31.634	4.8382	1	86011	+		48214	18525	39982	40009	51739	51739					0.06628261191815454
RGLHFRKKLCL	11	Unmodified	_RGLHFRKKLCL_					0	0	0			REV__ENSG00000266714|ENST00000645453|MYO15B	REV__ENSG00000266714|ENST00000645453|MYO15B	MSMS	OvCa9_classI_Rep4_	4	457.60760498046875	3	457.611569	1369.81288	NaN	NaN	NaN	NaN	NaN	NaN	NaN	157.1	1	155.56	155.06	156.06	-1.545								0	0	0	0.19474	1	15529	15529		13.508	1.5756	1		+		48215	23589	39983	40010	51740	51740					0.14276477489875106
RGLHHKRVLR	10	Unmodified	_RGLHHKRVLR_					0	0	0			REV__ENSG00000068354|ENST00000376771|TBC1D25	REV__ENSG00000068354|ENST00000376771|TBC1D25	MULTI-MSMS	OvCa9_classI_Rep4_	4	636.3981323242188	2	636.399622	1270.78469	-6.0266	-0.0038353	4.1298	0.0026282	-1.8968	-0.0012071	636.4021340969482	159.63	1.4705	158.02	157.73	159.2	-1.6101					96	32	4	0	0	0	0.73378	1	15774	15774		26.693	1.1189	1	297970	+		48216	16850	39984	40011	51741	51741					0.160129156247649
RGLKAVYVNP	10	Unmodified	_RGLKAVYVNP_					0	0	0		tr|A0A553SPW0|A0A553SPW0_NIACIAspartokinaseOS=NialliacirculansOX=1397GN=CEQ21_10875PE=3SV=1	tr|A0A553SPW0|A0A553SPW0_NIACIAspartokinaseOS=NialliacirculansOX=1397GN=CEQ21_10875PE=3SV=1	tr|A0A553SPW0|A0A553SPW0_NIACIAspartokinaseOS=NialliacirculansOX=1397GN=CEQ21_10875PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.7693481445312	2	558.82984	1115.64513	1.9705	0.0011012	-2.5501	-0.0014251	-0.57955	-0.00032387	558.828480645721	107.03	0.46701	107.03	106.85	107.31	0					14	10	2	0	0	0	0.026849	1	12049	12049		32.812	4.9302	1	229660			48217	34094	39985	40012	51742	51742					0.09193113496894512
RGLKDPNQL	9	Unmodified	_RGLKDPNQL_					0	0	0		ENSG00000103723|ENST00000535359|AP3B2;nc|ENSG00000103723|Q13367|AP3B2	ENSG00000103723|ENST00000535359|AP3B2	ENSG00000103723|ENST00000535359|AP3B2	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.7969970703125	2	520.795998	1039.57744	0.59198	0.0003083	2.7276	0.0014205	3.3196	0.0017288	520.797385276476	36.315	1.995	33.466	33.139	35.134	-2.849					141	39	6	0	0	0	0.59259	1	1337	1337		32.812	2.3088	1	2408500			48218	2338	39986	40013	51743	51743					0.05923663566090909
RGLKGSRTP	9	Unmodified	_RGLKGSRTP_					0	0	0			REV__nc|ENSG00000204979|Q5J8X5-2|MS4A13	REV__nc|ENSG00000204979|Q5J8X5-2|MS4A13	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.3117980957031	2	486.290882	970.567212	1.2051	0.00058601	4.1213	0.0020042	5.3264	0.0025902	486.29258699082857	109.57	1.1612	109.57	109.24	110.4	0					35	25	2	0	0	0	0.027462	1	12379	12379		26.693	0	1	248830	+		48219	29105	39987	40014	51744	51744					0.08075100631526766
RGLKRRPL	8	Unmodified	_RGLKRRPL_					0	0	0			REV__ENST00000268035.10_1_15:99192229-99192595:+|nuORF	REV__ENST00000268035.10_1_15:99192229-99192595:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.33392333984375	2	498.332885	994.651216	0.034655	1.727E-05	2.1794	0.001086	2.214	0.0011033	498.3339335091273	123.54	3.2541	123.31	122.99	126.25	-0.23193					175	65	5	0	0	0	0.65582	1	11951	11951		52.299	7.7681	1	3004600	+		48220	24052	39988	40015	51745	51745					0.153676765190653
RGLKSVPPNSR	11	Unmodified	_RGLKSVPPNSR_					0	0	0		nc|ENSG00000115607|O95256-2|IL18RAP;ENSG00000115607|ENST00000687160|IL18RAP	nc|ENSG00000115607|O95256-2|IL18RAP	nc|ENSG00000115607|O95256-2|IL18RAP	MULTI-MSMS	OvCa9_classI_Rep3	3	605.8558959960938	2	605.854378	1209.6942	1.4544	0.00088118	0.6195	0.00037533	2.0739	0.0012565	605.8546440314993	133.02	1.7212	131.9	131.58	133.3	-1.1249					92	34	4	0	0	0	0.69735	1	10697	10697		30.569	0.25114	1	499230			48221	3113	39989	40016	51746	51746					0.09774401785830378
RGLLEEPE	8	Unmodified	_RGLLEEPE_					0	0	0			REV__nc|ENSG00000100644|Q16665-2|HIF1A	REV__nc|ENSG00000100644|Q16665-2|HIF1A	MULTI-MSMS	OvCa9_classI_Rep3	3	471.7484436035156	2	471.748182	941.481811	-0.24714	-0.00011659	-0.23144	-0.00010918	-0.47857	-0.00022577	471.7479787376128	116.81	1.2877	115.76	115.49	116.78	-1.0414					55	25	3	0	0	0	0.7549	1	8747	8747		24.203	0	1	307460	+		48222	17441	39990	40017	51747	51747					0.008728906551823457
RGLLEVVFV	9	Unmodified	_RGLLEVVFV_					0	0	0			REV__ENSG00000142583|ENST00000377424|SLC2A5	REV__ENSG00000142583|ENST00000377424|SLC2A5	MULTI-MSMS	OvCa9_classI_Rep2	2	516.3135986328125	2	516.316035	1030.61752	-4.2539	-0.0021964	0.14413	7.4418E-05	-4.1098	-0.002122	516.3160035152533	156.4	1.1562	156.18	155.89	157.05	-0.22696					77	28	5	0	0	0	0.61208	1	15918	15918		30.504	7.4612	1	397210	+		48223	19792	39991	40018	51748	51748					0.10343210236646883
RGLLGRCY	8	Unmodified	_RGLLGRCY_					0	0	0		ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	469.7882385253906	2	469.255454	936.496355	0.37034	0.00017378	-2.647	-0.0012421	-2.2767	-0.0010683	469.25384965395375	57.886	0.50571	54.541	54.393	54.899	-3.3449					16	9	3	0	0	0	0.028476	1	3791	3791		20.482	16.797	1	23962			48224	3379	39992	40019	51749	51749					0.025566843223373326
RGLLLPKLE	9	Unmodified	_RGLLLPKLE_					0	0	0			REV__ENST00000532324.5_2_1:212988739-212988829:+|nuORF	REV__ENST00000532324.5_2_1:212988739-212988829:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.8198852539062	2	519.837134	1037.65972	0.034785	1.8083E-05	-1.6634	-0.0008647	-1.6286	-0.00084662	519.836444268031	132.63	0.69135	131.51	131.29	131.98	-1.1249					26	13	3	0	0	0	0.027462	1	10604	10604		23.042	1.0826	1	40572	+		48225	27233	39993	40020	51750	51750					0.1423918564505584
RGLLPQVF	8	Unmodified	_RGLLPQVF_					0	0	0			REV__ENSG00000137962|ENST00000260526|ARHGAP29	REV__ENSG00000137962|ENST00000260526|ARHGAP29	MULTI-MSMS	OvCa9_classI_Rep3	3	465.27978515625	2	465.281995	928.549437	-2.2481	-0.001046	-2.4395	-0.0011351	-4.6876	-0.002181	465.28073984197977	140.54	1.2277	139.51	139.24	140.46	-1.0339					42	24	2	0	0	0	0.74971	1	11576	11576		26.796	2.5934	1	53002	+		48226	19496	39994	40021	51751	51751					0.08230385376668892
RGLLPQVF	8	Unmodified	_RGLLPQVF_					0	0	0			REV__ENSG00000137962|ENST00000260526|ARHGAP29	REV__ENSG00000137962|ENST00000260526|ARHGAP29	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	465.281995	928.549437	-2.2481	-0.001046	-2.4395	-0.0011351	-4.6876	-0.002181	465.28073984197977	140.54	1.2277	139.51	139.24	140.46	-1.0339	0.014633	0.00080219	NaN	26.796	42	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53002	+		48227	19496	39994	40021							0.08230385376668892
RGLLPQVF	8	Unmodified	_RGLLPQVF_					0	0	0			REV__ENSG00000137962|ENST00000260526|ARHGAP29	REV__ENSG00000137962|ENST00000260526|ARHGAP29	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	465.281995	928.549437	0.57186	0.00026607	-5.867	-0.0027298	-5.2951	-0.0024637	465.27920174519176	140.94	0.93408	139.48	139.25	140.18	-1.4627	-0.014633	-0.0023873	NaN	26.796	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35478	+		48228	19496	39994	40021							0.08230385376668892
RGLLQLLAR	9	Unmodified	_RGLLQLLAR_					0	0	0		ENST00000370544.9_1_1:87794601-87794751:+|nuORF	ENST00000370544.9_1_1:87794601-87794751:+|nuORF	ENST00000370544.9_1_1:87794601-87794751:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.3404541015625	2	520.340375	1038.6662	-1.4242	-0.00074106	0.67069	0.00034899	-0.75349	-0.00039207	520.3406316371613	43.626	1.7808	40.618	40.326	42.106	-3.0074					96	34	5	0	0	0	0.38529	1	2134	2134		53.351	7.3995	1	814690			48229	10930	39995	40022	51752	51752					0.14841123596397665
RGLLYPILL	9	Unmodified	_RGLLYPILL_					0	0	0			REV__ENSG00000070915|ENST00000563236|SLC12A3	REV__ENSG00000070915|ENST00000563236|SLC12A3	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.3428344726562	2	529.342052	1056.66955	0.34687	0.00018361	0.074595	3.9486E-05	0.42147	0.0002231	529.3419281598773	139.64	1.5853	138.15	137.78	139.37	-1.4952					72	30	3	0	0	0	0.59983	1	13663	13663		31.955	4.0726	1	57433	+		48230	16893	39996	40023	51753	51753					0.14348373650409485
RGLNKWLQVC	10	Unmodified	_RGLNKWLQVC_					0	0	0		ENST00000418133.5_3_22:43308130-43341832:-|nuORF	ENST00000418133.5_3_22:43308130-43341832:-|nuORF	ENST00000418133.5_3_22:43308130-43341832:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	608.8380737304688	2	608.8346	1215.65465	1.2125	0.00073819	3.9335	0.0023948	5.1459	0.003133	608.8368613491077	156.48	2.1073	156.48	156.04	158.15	0					128	41	5	0	0	0	0.65434	1	18349	18349		35.618	0.46626	1	3302900			48231	11630	39997	40024	51754	51754					0.05544558510769093
RGLQKQLDL	9	Unmodified	_RGLQKQLDL_					0	0	0			REV__ENSG00000148341|ENST00000372564|SH3GLB2	REV__ENSG00000148341|ENST00000372564|SH3GLB2	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.294189453125	2	535.819473	1069.62439	0.17616	9.4389E-05	3.0131	0.0016145	3.1892	0.0017089	535.8203038268714	62.652	0.56777	62.652	62.209	62.777	0					21	13	2	0	0	0	0.027462	1	5602	5602		27.882	0	1	280550	+		48232	20103	39998	40025	51755	51755					0.09236523117237994
RGLRAHLGR	9	Unmodified	_RGLRAHLGR_					0	0	0		ENST00000370526.3_1_X:140271195-140271291:-|nuORF	ENST00000370526.3_1_X:140271195-140271291:-|nuORF	ENST00000370526.3_1_X:140271195-140271291:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.3157958984375	2	518.317766	1034.62098	2.0408	0.0010578	-3.6977	-0.0019166	-1.6569	-0.00085879	518.3157944372941	136.58	3.063	135.03	133.61	136.67	-1.5437					148	63	3	0	0	0	0.61208	1	13218	13218		30.504	0	1	141910			48233	10929	39999	40026	51756	51756					0.10505317853903762
RGLRKIPTP	9	Unmodified	_RGLRKIPTP_					0	0	0		ENST00000527245.5_1_11:124746819-124746948:+|nuORF	ENST00000527245.5_1_11:124746819-124746948:+|nuORF	ENST00000527245.5_1_11:124746819-124746948:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.7998657226562	2	519.33255	1036.65055	-0.78925	-0.00040988	-0.82708	-0.00042953	-1.6163	-0.00083941	519.3316569020008	86.233	0.75224	84.012	83.735	84.488	-2.2204					26	14	2	0	0	0	0.027462	1	5144	5144		14.865	8.1293	1	31308			48234	13230	40000	40027	51757	51757					0.13368837079360674
RGLRLLRPP	9	Unmodified	_RGLRLLRPP_					0	0	0		ENST00000312719.9_1_6:114663491-114664094:-|nuORF	ENST00000312719.9_1_6:114663491-114664094:-|nuORF	ENST00000312719.9_1_6:114663491-114664094:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	539.3530883789062	2	539.353817	1076.69308	2.2939	0.0012372	-2.3996	-0.0012943	-0.10574	-5.7029E-05	539.3523735364151	63.128	1.3441	60.094	59.756	61.1	-3.0339					58	26	3	0	0	0	0.65476	1	2337	2337		25.45	0	1	102560			48235	10311	40001	40028	51758	51758					0.15780232207589506
RGLRPRRQ	8	Unmodified	_RGLRPRRQ_					0	0	0		ENSG00000164850|ENST00000397088|GPER1	ENSG00000164850|ENST00000397088|GPER1	ENSG00000164850|ENST00000397088|GPER1	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.2908325195312	2	519.823215	1037.63188	0.36849	0.00019155	-3.1227	-0.0016233	-2.7542	-0.0014317	519.8215425953751	152.89	0.69586	152.89	152.55	153.25	0					23	16	2	0	0	0	0.028476	1	17942	17942		12.207	5.0135	1	27669			48236	6491	40002	40029	51759	51759					0.11456720228170525
RGLRYFCPP	9	Unmodified	_RGLRYFCPP_					0	0	0		ENST00000462443.1_1_2:74690388-74692498:-|nuORF	ENST00000462443.1_1_2:74690388-74692498:-|nuORF	ENST00000462443.1_1_2:74690388-74692498:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.2994384765625	2	554.789661	1107.56477	1.0865	0.00060281	-4.0727	-0.0022595	-2.9861	-0.0016567	554.7897168272374	156.87	0.3501	156.87	156.65	157	0					10	6	2	0	0	0	0.027462	1	18371	18371		31.955	0	1	17177			48237	12203	40003	40030	51760	51760					0.015289289021893637
RGLSPPSPTP	10	Unmodified	_RGLSPPSPTP_					0	0	0			REV__nc|ENSG00000182871|P39060|COL18A1	REV__nc|ENSG00000182871|P39060|COL18A1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.7781982421875	2	504.777274	1007.53999	-0.50634	-0.00025559	-3.8642	-0.0019506	-4.3706	-0.0022062	505.2772750363103	22.006	0.15127	20.668	20.574	20.726	-1.3386					4	2	2	0	0	0	0.026915	1	230	230		27.882	7.4004	1	6406.4	+		48238	29043	40004	40031	51761	51761					0.03652572300461543
RGLTAGLWLW	10	Unmodified	_RGLTAGLWLW_					0	0	0			REV__ENST00000479501.5_1_20:61926459-61943880:+|nuORF	REV__ENST00000479501.5_1_20:61926459-61943880:+|nuORF	MSMS	OvCa9_classI_Rep2	2	586.8302001953125	2	586.832383	1171.65021	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.033	1	55.241	54.741	55.741	-2.792								0	0	0	0.13545	1	4171	4171		29.15	3.0862	1		+		48239	17480	40005	40032	51762	51762					0.07125417359520725
RGLVQFIGRLL	11	Unmodified	_RGLVQFIGRLL_					0	0	0			REV__nc|ENSG00000124678|Q8WWU5-3|TCP11	REV__nc|ENSG00000124678|Q8WWU5-3|TCP11	MULTI-MSMS	OvCa9_classI_Rep4_	4	636.397705078125	2	636.400964	1270.78738	-6.0266	-0.0038353	2.02	0.0012855	-4.0066	-0.0025498	636.4021340969482	159.63	1.4705	158.02	157.73	159.2	-1.6101					96	32	4	0	0	0	0.72511	1	15753	15753		14.137	0	1	297970	+		48240	18701	40006	40033	51763	51763					0.16281326239095506
RGLYKSIQ	8	Unmodified	_RGLYKSIQ_					0	0	0		ENSG00000165996|ENST00000361271|HACD1;nc|ENSG00000165996|B0YJ81-2|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	MULTI-MSMS	OvCa9_classI_Rep3	3	482.78411865234375	2	482.782359	963.550165	1.1629	0.00056142	2.6735	0.0012907	3.8364	0.0018521	482.7834710585416	120.81	2.5422	119.78	119.46	122	-1.0271					114	48	4	0	0	0	0.74229	1	9216	9216		30.504	1.3541	1	731330			48241	6625	40007	40034	51764	51764					0.06693180025706624
RGLYVIVKK	9	Unmodified	_RGLYVIVKK_					0	0	0			REV__ENSG00000075539|ENST00000358350|FRYL	REV__ENSG00000075539|ENST00000358350|FRYL	MULTI-MSMS	OvCa9_classI_Rep3	3	538.3526000976562	2	538.352951	1074.69135	1.9638	0.0010572	-2.0995	-0.0011303	-0.13577	-7.3094E-05	538.3516679385732	66.531	2.2143	63.585	63.265	65.479	-2.9459					98	43	3	0	0	0	0.55588	1	2762	2762		37.159	2.0071	1	167090	+		48242	16974	40008	40035	51765	51765					0.15699178398972435
RGMARRVR	8	Unmodified	_RGMARRVR_					0	0	0			REV__ENST00000319212.8_1_15:66604146-66604206:+|nuORF	REV__ENST00000319212.8_1_15:66604146-66604206:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.30511474609375	2	501.298519	1000.58248	-0.90514	-0.00045375	4.1795	0.0020952	3.2744	0.0016414	501.8028812224409	94.666	0.75122	92.771	92.409	93.16	-1.8956					23	14	2	0	0	0	0.028476	1	6115	6115		24.203	0	1	28322	+		48243	24431	40009	40036	51766	51766					0.08221688947719485
RGMIGLIMTP	10	2 Oxidation (M)	_RGM(Oxidation (M))IGLIM(Oxidation (M))TP_		RGM(1)IGLIM(1)TP		RGM(74)IGLIM(74)TP	0	0	2			REV__tr|A0A553SRJ7|A0A553SRJ7_NIACITeichoicacidD-alanyltransferaseOS=NialliacirculansOX=1397GN=dltBPE=3SV=1	REV__tr|A0A553SRJ7|A0A553SRJ7_NIACITeichoicacidD-alanyltransferaseOS=NialliacirculansOX=1397GN=dltBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.8069458007812	2	560.796294	1119.57804	1.0498	0.00058871	3.3409	0.0018736	4.3907	0.0024623	560.7970989748085	102.23	2.4606	100.03	99.573	102.03	-2.1994					152	46	6	0	0	0	0.35465	1	9182	9182		74.255	6.7614	1	2187800	+		48244	30738	40010	40037	51767	51767		682;683			0.023029988992902872
RGMLVGGLIL	10	Unmodified	_RGMLVGGLIL_					0	0	0		tr|A0A553STI8|A0A553STI8_NIACISporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_04940PE=3SV=1	tr|A0A553STI8|A0A553STI8_NIACISporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_04940PE=3SV=1	tr|A0A553STI8|A0A553STI8_NIACISporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_04940PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.8153686523438	2	514.817887	1027.62122	-0.32798	-0.00016885	-3.0809	-0.0015861	-3.4088	-0.0017549	514.8161006739908	128.1	1.7242	126.66	126.04	127.76	-1.4357					85	33	4	0	0	0	0.62668	1	12265	12265		38.806	1.647	1	358610			48245	34493	40011	40038	51768	51768					0.108515567388622
RGMQVPGC	8	Unmodified	_RGMQVPGC_					0	0	0		ENST00000547670.5_1_12:49494396-49503620:-|nuORF	ENST00000547670.5_1_12:49494396-49503620:-|nuORF	ENST00000547670.5_1_12:49494396-49503620:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	424.1994934082031	2	424.19929	846.384028	1.0576	0.00044862	1.2869	0.00054589	2.3444	0.00099451	424.19976643391453	129.13	1.2356	127.67	127.35	128.58	-1.4565					48	24	3	0	0	0	0.73626	1	12379	12379		33.516	0	1	120730			48246	13551	40012	40039	51769	51769					-0.04530912746156446
RGMVKVYV	8	Unmodified	_RGMVKVYV_					0	0	0			REV__L1P2_dup554|chr5:118974817-118975709:-|1.3792945865888482|0.1408758943517007|3.29|429.0|8|1|sense	REV__L1P2_dup554|chr5:118974817-118975709:-|1.3792945865888482|0.1408758943517007|3.29|429.0|8|1|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	476.2783203125	2	476.275855	950.537157	-0.26249	-0.00012502	4.3239	0.0020594	4.0614	0.0019344	476.27774295563756	23.962	0.25054	23.962	23.836	24.086	0					7	4	2	0	0	0	0.74679	1	396	396		28.254	7.7724	1	36649	+		48247	28453	40013	40040	51770	51770					0.059910256419584584
RGNFPRLPG	9	Unmodified	_RGNFPRLPG_					0	0	0		ENST00000412770.6_2_19:55770150-55770318:-|nuORF	ENST00000412770.6_2_19:55770150-55770318:-|nuORF	ENST00000412770.6_2_19:55770150-55770318:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.2831115722656	2	507.2856	1012.55665	0.0066851	3.3913E-06	-4.0716	-0.0020655	-4.0649	-0.0020621	507.283412188162	31.081	1.5294	28.371	28.15	29.679	-2.7097					66	30	3	0	0	0	0.48324	1	909	909		44.117	4.864	1	500220			48248	11554	40014	40041	51771	51771					0.05087117977075195
RGNRAGLTW	9	Unmodified	_RGNRAGLTW_					0	0	0			REV__ENST00000604292.1_1_6:101337837-101337969:+|nuORF	REV__ENST00000604292.1_1_6:101337837-101337969:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	515.7820434570312	2	515.780682	1029.54681	3.8164	0.0019684	-1.1183	-0.0005768	2.6981	0.0013916	515.7800627654972	25.113	0.82449	22.404	22.29	23.115	-2.7097					31	17	2	0	0	0	0.63422	1	227	227		27.882	1.0861	1	167870	+		48249	28058	40015	40042	51772	51772					0.03321929971684767
RGPARLLGWLL	11	Unmodified	_RGPARLLGWLL_					0	0	0		ENSG00000183134|ENST00000332539|PTGDR2	ENSG00000183134|ENST00000332539|PTGDR2	ENSG00000183134|ENST00000332539|PTGDR2	MULTI-MSMS	OvCa9_classI_Rep2	2	626.3897094726562	2	626.387857	1250.76116	-5.6586	-0.0035445	4.4262	0.0027725	-1.2324	-0.00077198	626.8920656002647	163.54	1.1058	163.31	162.97	164.08	-0.22697					56	36	2	0	0	0	0.72459	1	16668	16668		20.947	0.95016	1	65883			48250	8053	40016	40043	51773	51773					0.14581057067607617
RGPASRGKILP	11	Unmodified	_RGPASRGKILP_					0	0	0			REV__nc|ENSG00000110422|Q9H422-2|HIPK3	REV__nc|ENSG00000110422|Q9H422-2|HIPK3	MULTI-MSMS	OvCa9_classI_Rep3	3	576.353271484375	2	576.354014	1150.69348	-0.5103	-0.00029411	-0.49695	-0.00028642	-1.0073	-0.00058053	576.3538085628105	72.001	4.4609	69.399	69.081	73.542	-2.6023					248	89	5	0	0	0	0.56391	1	3384	3384		47.96	1.9873	1	7516400	+		48251	17981	40017	40044	51774	51774					0.12415607136813378
RGPDEQSLL	9	Unmodified	_RGPDEQSLL_					0	0	0			REV__HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|79|1|anti-sense	REV__HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|79|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7657775878906	2	507.764363	1013.51417	3.7041	0.0018808	0.31932	0.00016214	4.0235	0.002043	507.76435878537296	132.17	1.6916	130.67	129.94	131.63	-1.5015					93	33	4	0	0	0	0.5811	1	12721	12721		34.173	5.023	1	152800	+		48252	28223	40018	40045	51775	51775					0.00795678058204885
RGPDLLRGLRA	11	Unmodified	_RGPDLLRGLRA_					0	0	0		ENST00000222219.7_1_19:12991939-12992268:-|nuORF	ENST00000222219.7_1_19:12991939-12992268:-|nuORF	ENST00000222219.7_1_19:12991939-12992268:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	612.3475952148438	2	612.370195	1222.72584	1.9172	0.0011741	0.98244	0.00060162	2.8997	0.0017757	612.3708423993967	138.65	0.55046	137.12	136.83	137.38	-1.5284					16	11	2	0	0	0	0.025912	1	13477	13477		22.58	5.8623	1	27901			48253	9696	40019	40046	51776	51776					0.12338394539801811
RGPEIEVVL	9	Unmodified	_RGPEIEVVL_					0	0	0		ENST00000409614.1_1_15:44085043-44085169:+|nuORF	ENST00000409614.1_1_15:44085043-44085169:+|nuORF	ENST00000409614.1_1_15:44085043-44085169:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.8211364746094	2	506.295299	1010.57605	-0.60772	-0.00030768	0.71976	0.00036441	0.11204	5.6725E-05	506.2954809929686	69.807	1.2506	67.236	66.565	67.815	-2.5707					58	24	4	0	0	0	0.027462	1	5508	5508		27.882	14.107	1	146850			48254	11531	40020	40047	51777	51777					0.0711802947733986
RGPERRPAE	9	Unmodified	_RGPERRPAE_					0	0	0		ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	ENSG00000100304|ENST00000216129|TTLL12	MULTI-MSMS	OvCa99_classI_Rep5	1	534.28662109375	2	534.288871	1066.56319	-0.82892	-0.00044288	-3.815	-0.0020383	-4.6439	-0.0024812	534.2867400173012	66.018	0.95216	66.018	65.748	66.7	0					58	23	5	0	0	0	0.37135	1	6088	6088		54.776	1.4249	1	19820000			48255	2043	40021	40048	51778	51778					0.03257011137793597
RGPFKDIVK	9	Unmodified	_RGPFKDIVK_					0	0	0			REV__tr|A0A553SHI9|A0A553SHI9_NIACIThymidylatekinaseOS=NialliacirculansOX=1397GN=tmkPE=3SV=1	REV__tr|A0A553SHI9|A0A553SHI9_NIACIThymidylatekinaseOS=NialliacirculansOX=1397GN=tmkPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	530.3172607421875	2	530.319109	1058.62366	0.028032	1.4866E-05	-4.2531	-0.0022555	-4.2251	-0.0022406	530.3168449999141	32.724	0.93093	32.724	32.602	33.533	0					54	18	5	0	0	0	0.091859	1	1446	1446		99.375	3.1845	1	1474300	+		48256	29807	40022	40049	51779	51779					0.09669728468179528
RGPGPLTL	8	Unmodified	_RGPGPLTL_					0	0	0		nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENSG00000059122|ENST00000253928|FLYWCH1;nc|ENSG00000059122|Q4VC44-3|FLYWCH1;nc|ENSG00000059122|Q4VC44-4|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	MULTI-MSMS	OvCa9_classI_Rep2	2	405.7443542480469	2	405.745245	809.475937	1.1554	0.00046878	-0.86817	-0.00035225	0.2872	0.00011653	405.74475762963664	73.362	1.8327	70.962	70.22	72.052	-2.3999					79	34	4	0	0	0	0.56195	1	5963	5963		71.296	2.811	1	506230			48257	1251	40023	40050	51780	51780					0.06357836934171246
RGPGPLTL	8	Unmodified	_RGPGPLTL_					0	0	0		nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENSG00000059122|ENST00000253928|FLYWCH1;nc|ENSG00000059122|Q4VC44-3|FLYWCH1;nc|ENSG00000059122|Q4VC44-4|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	MULTI-MSMS	OvCa9_classI_Rep4_	4	405.74591064453125	2	405.745245	809.475937	1.137	0.00046132	-1.1048	-0.00044825	0.032213	1.307E-05	405.74469625687584	74.399	1.7805	71.168	70.816	72.596	-3.2308					87	36	4	0	0	0	0.39692	1	5840	5840		88.643	8.7036	1	1442300			48258	1251	40023	40050	51781	51781					0.06357836934171246
RGPKKASIK	9	Unmodified	_RGPKKASIK_					0	0	0			REV__nc|ENSG00000151725|Q71F23-3|CENPU	REV__nc|ENSG00000151725|Q71F23-3|CENPU	MULTI-MSMS	OvCa9_classI_Rep2	2	492.81878662109375	2	492.819276	983.623999	-1.0524	-0.00051866	0.60887	0.00030006	-0.44358	-0.0002186	492.81937696825383	61.985	2.6287	59.225	58.882	61.511	-2.7593					139	50	4	0	0	0	0.63422	1	4674	4674		27.882	5.9224	1	798600	+		48259	20251	40024	40051	51782	51782					0.13153148188018804
RGPLKKSN	8	Unmodified	_RGPLKKSN_					0	0	0		ENSG00000216490|ENST00000407280|IFI30;IFI30|p.L66Tfs*5|1|0.21|ENSG00000216490|chr19:18175102-18175103|-/ACAT|frameshift_variant;ENST00000600463.1_1_19:18285864-18288180:+|nuORF	ENSG00000216490|ENST00000407280|IFI30	ENSG00000216490|ENST00000407280|IFI30	MULTI-MSMS	OvCa9_classI_Rep3	3	450.27374267578125	2	450.274701	898.534849	-3.7498	-0.0016884	3.5683	0.0016067	-0.18149	-8.172E-05	450.27623858459356	147.83	1.7988	146.88	146.5	148.3	-0.95119					100	35	5	0	0	0	0.75241	1	12482	12482		25.45	2.4077	1	751980			48260	9213	40025	40052	51783	51783					0.08152313228515595
RGPLLKRRA	9	Unmodified	_RGPLLKRRA_					0	0	0			REV__A1CF|p.L286*|1|0.29|ENSG00000148584|chr10:50820562-50820562|A/-|frameshift_variant	REV__A1CF|p.L286*|1|0.29|ENSG00000148584|chr10:50820562-50820562|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.8095092773438	2	533.851442	1065.68833	-1.2248	-0.00065386	-3.0776	-0.001643	-4.3024	-0.0022968	533.849435062558	96.182	0.15163	93.756	93.659	93.811	-2.4256					4	2	2	0	0	0	0.027462	1	8484	8484		24.203	10.427	1	11280	+		48261	15546	40026	40053	51784	51784					0.1581134806483533
RGPLLQLLGL	10	Unmodified	_RGPLLQLLGL_					0	0	0			REV__ENSG00000101850|ENST00000467482|GPR143	REV__ENSG00000101850|ENST00000467482|GPR143	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.3309326171875	2	540.350409	1078.68626	1.1586	0.00062607	-1.3733	-0.00074206	-0.21465	-0.00011599	540.349519524333	110.5	0.82569	109.35	109.14	109.96	-1.1444					27	15	2	0	0	0	0.026802	1	8048	8048		34.173	1.3601	1	32402	+		48262	17522	40027	40054	51785	51785					0.15006874536379655
RGPLLVALR	9	Unmodified	_RGPLLVALR_					0	0	0			REV__ENST00000559565.5_1_15:64679957-64701921:+|nuORF	REV__ENST00000559565.5_1_15:64679957-64701921:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	497.8309020996094	2	497.829643	993.644734	0.30182	0.00015026	-0.52392	-0.00026082	-0.2221	-0.00011057	497.8292193725871	63.184	0.55814	63.184	62.976	63.534	0					31	13	3	0	0	0	0.46377	1	5678	5678		45.952	0	1	1612600	+		48263	17631	40028	40055	51786	51786					0.14765738567700737
RGPLRLSSV	9	Unmodified	_RGPLRLSSV_					0	0	0			REV__ENST00000468300.5_1_17:41276090-41277404:-|nuORF	REV__ENST00000468300.5_1_17:41276090-41277404:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.8021240234375	2	492.801083	983.587613	0.48653	0.00023976	-1.4785	-0.00072861	-0.99198	-0.00048885	492.8003668451582	60.85	2.2415	57.42	57.095	59.336	-3.43					111	45	3	0	0	0	0.44568	1	4165	4165		47.657	5.2612	1	4101800	+		48264	26218	40029	40056	51787	51787					0.09516271291317935
RGPPKPGLVR	10	Unmodified	_RGPPKPGLVR_					0	0	0		ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	539.8133544921875	2	538.838	1075.66145	-1.1206	-0.00060385	3.8236	0.0020603	2.703	0.0014565	539.34135939309	101.85	0.20443	99.583	99.404	99.609	-2.2665					6	3	2	0	0	0	0.027198	1	9138	9138		14.137	3.2716	1	10962			48265	5076	40030	40057	51788	51788					0.12664239453647497
RGPPPPPPP	9	Unmodified	_RGPPPPPPP_					0	0	0			REV__ENST00000397992.5_1_16:73092794-73093010:-|nuORF	REV__ENST00000397992.5_1_16:73092794-73093010:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.2577209472656	2	456.25852	910.502486	-0.95681	-0.00043655	0.87418	0.00039885	-0.082633	-3.7702E-05	456.25875650816954	50.795	1.4926	47.621	46.631	48.123	-3.1734					79	28	3	0	0	0	0.29717	2	2974	2963;2974		63.306	5.495	1	346610	+		48266	25369	40031	40058	51789;51790	51790					0.04365525825505756
RGPPTWLS	8	Unmodified	_RGPPTWLS_					0	0	0		ENST00000557648.1_1_14:75517558-75517660:-|nuORF	ENST00000557648.1_1_14:75517558-75517660:-|nuORF	ENST00000557648.1_1_14:75517558-75517660:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	457.2501525878906	2	457.248152	912.481751	-0.26664	-0.00012192	-0.12565	-5.7452E-05	-0.39229	-0.00017937	457.24786020391787	53.945	1.1989	53.945	53.692	54.891	0					58	28	4	0	0	0	0.62934	1	4316	4316		57.811	5.5121	1	2538800			48267	13686	40032	40059	51791	51791					0.022009354458418784
RGPRQALSLLQ	11	Unmodified	_RGPRQALSLLQ_					0	0	0			REV__nc|ENSG00000196943|Q86U38-2|NOP9	REV__nc|ENSG00000196943|Q86U38-2|NOP9	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8666381835938	2	619.870028	1237.7255	-4.6351	-0.0028732	3.9438	0.0024446	-0.69133	-0.00042853	619.8722316862547	154.7	1.6496	154.47	153.32	154.97	-0.22696					44	35	2	0	0	0	0.72479	1	15778	15778		18.262	3.3972	1	26978	+		48268	29079	40033	40060	51792	51792					0.11614974819940471
RGPRRGWLGA	10	Unmodified	_RGPRRGWLGA_					0	0	0		ENST00000550078.2_2_1:203764919-203765303:+|nuORF	ENST00000550078.2_2_1:203764919-203765303:+|nuORF	ENST00000550078.2_2_1:203764919-203765303:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	563.8244018554688	2	563.323048	1124.63154	-6.0709	-0.0034199	-1.3372	-0.00075327	-7.4081	-0.0041731	563.322073230946	155.76	0.93549	154.68	154.4	155.34	-1.073					61	26	3	0	0	0	0.7759	1	13380	13380		21.96	1.9631	1	103840			48269	13579	40034	40061	51793	51793					0.0742130050830383
RGPSAPKR	8	Unmodified	_RGPSAPKR_					0	0	0			REV__ENSG00000165804|ENST00000360947|ZNF219	REV__ENSG00000165804|ENST00000360947|ZNF219	MULTI-MSMS	OvCa9_classI_Rep4_	4	434.7591857910156	2	434.759218	867.503883	3.5305	0.0015349	-3.4726	-0.0015098	0.05787	2.516E-05	434.7576043872035	134.83	0.98985	133.28	133.02	134.01	-1.5437					40	19	3	0	0	0	0.74229	1	13051	13051		30.504	0.6621	1	52300	+		48270	21120	40035	40062	51794	51794					0.06483159914273529
RGPSCLLTGPK	11	Unmodified	_RGPSCLLTGPK_					0	0	0		ENST00000382888.3_1_4:1953834-1954747:+|nuORF	ENST00000382888.3_1_4:1953834-1954747:+|nuORF	ENST00000382888.3_1_4:1953834-1954747:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.81103515625	2	564.813333	1127.61211	2.1264	0.001201	3.7267	0.0021049	5.8531	0.0033059	564.8150904013954	87.651	0.25097	87.651	87.42	87.671	0					7	5	2	0	0	0	0.025406	1	9289	9289		46.457	12.535	1	244690			48271	11181	40036	40063	51795	51795					0.053411633825362514
RGPSPFSPVQ	10	Unmodified	_RGPSPFSPVQ_					0	0	0		nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2	nc|ENSG00000080503|P51531-2|SMARCA2	nc|ENSG00000080503|P51531-2|SMARCA2	MULTI-SECPEP	OvCa9_classI_Rep2	2	535.3202514648438	2	536.282723	1070.55089	-1.6827	-0.00090241	1.1508	0.00061716	-0.5319	-0.00028525	536.2832677801616	99.882	0.69316	99.051	98.766	99.459	-0.83051					20	13	2	0	0	0	0.026956	1	9109	9109		14.137	0	1	38724			48272	1636	40037	40064	51796	51796					0.01843974674761739
RGPSPFSPVQ	10	Unmodified	_RGPSPFSPVQ_					0	0	0		nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2	nc|ENSG00000080503|P51531-2|SMARCA2	nc|ENSG00000080503|P51531-2|SMARCA2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	536.282723	1070.55089	0.25247	0.0001354	-0.74926	-0.00040182	-0.49679	-0.00026642	536.2820869239529	100.77	0.70976	99.168	98.946	99.656	-1.6053	0.038199	-0.001238	NaN	19.997	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35341			48273	1636	40037	40064							0.01843974674761739
RGPVPSTLL	9	Unmodified	_RGPVPSTLL_					0	0	0			REV__nc|ENSG00000068784|Q8N5C6-2|SRBD1	REV__nc|ENSG00000068784|Q8N5C6-2|SRBD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	469.31427001953125	2	470.284734	938.554916	1.4753	0.00069381	-1.5199	-0.00071481	-0.044648	-2.0997E-05	470.28408708881403	96.803	0.25033	94.377	94.169	94.42	-2.4256					6	4	2	0	0	0	0.027462	1	8531	8531		29.15	10.825	1	11135	+		48274	16858	40038	40065	51797	51797					0.08318064168486217
RGPVTGALL	9	Unmodified	_RGPVTGALL_					0	0	0		nc|ENSG00000214826|Q92771|DDX12P	nc|ENSG00000214826|Q92771|DDX12P	nc|ENSG00000214826|Q92771|DDX12P	MULTI-MSMS	OvCa9_classI_Rep2	2	442.2719421386719	2	442.271627	882.528701	1.6408	0.00072568	-1.6476	-0.0007287	-0.0068266	-3.0192E-06	442.2707883440315	96.215	1.7281	95.187	94.863	96.592	-1.0281					69	34	3	0	0	0	0.31747	1	8683	8683		60.972	3.1607	1	284170			48275	15313	40039	40066	51798	51798					0.08273794997001005
RGPVVFPL	8	Unmodified	_RGPVVFPL_					0	0	0		ENST00000378339.6_1_5:137781719-137782058:+|nuORF	ENST00000378339.6_1_5:137781719-137782058:+|nuORF	ENST00000378339.6_1_5:137781719-137782058:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	441.7861022949219	2	442.771263	883.527973	-0.60928	-0.00026977	1.0388	0.00045997	0.42956	0.0001902	442.7714352488395	103.71	0.62642	101.59	101.22	101.85	-2.1192					17	11	2	0	0	0	0.028476	1	9390	9390		12.959	0	1	12631			48276	11107	40040	40067	51799	51799					0.08155000347937857
RGQKPTLWALL	11	Unmodified	_RGQKPTLWALL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L2159Ffs*20|1|0.06|ENSG00000261150|chr8:143866777-143866778|-/G|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8823852539062	2	641.885147	1281.75574	-4.6434	-0.0029805	0.6524	0.00041876	-3.991	-0.0025618	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.69455	1	15528	15528		31.53	0	1	543390			48277	9498	40041	40068	51800	51800					0.12613333485137446
RGQKPTLWALL	11	Unmodified	_RGQKPTLWALL_					0	0	0		ENSG00000261150|ENST00000615648|EPPK1;EPPK1|p.L2159Ffs*20|1|0.06|ENSG00000261150|chr8:143866777-143866778|-/G|frameshift_variant	ENSG00000261150|ENST00000615648|EPPK1	ENSG00000261150|ENST00000615648|EPPK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.88134765625	2	641.885147	1281.75574	-3.6311	-0.0023307	-0.33677	-0.00021616	-3.9678	-0.0025469	641.8847801872174	153.39	4.0845	151.94	150.68	154.77	-1.4516					420	106	6	0	0	0	0.69455	1	15171	15171		31.53	0	1	809780			48278	9498	40041	40068	51801	51801					0.12613333485137446
RGQKVQPHI	9	Unmodified	_RGQKVQPHI_					0	0	0		HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|85|3|sense	HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|85|3|sense	HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|85|3|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8169555664062	2	531.811982	1061.60941	-0.70053	-0.00037255	3.2418	0.0017241	2.5413	0.0013515	532.3141153069843	135.98	3.1366	134.88	133.72	136.85	-1.1076					103	63	4	0	0	0	0.62352	1	11206	11206		29.15	2.4566	1	72410			48279	14479	40042	40069	51802	51802					0.08107076039891581
RGQVSPLST	9	Unmodified	_RGQVSPLST_					0	0	0		HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|184|3|sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|184|3|sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|184|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.2747802734375	2	472.761623	943.508694	0.13769	6.5094E-05	-0.025687	-1.2144E-05	0.112	5.295E-05	472.76146181826437	31.054	0.39006	31.054	30.781	31.171	0					16	7	3	0	0	0	0.027462	1	1255	1255		37.159	18.835	1	106800			48280	14399	40043	40070	51803	51803					0.03467999266365496
RGRADQLTL	9	Unmodified	_RGRADQLTL_					0	0	0		ENST00000346872.7_2_17:37921598-37921754:-|nuORF	ENST00000346872.7_2_17:37921598-37921754:-|nuORF	ENST00000346872.7_2_17:37921598-37921754:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.794921875	2	515.293622	1028.57269	-0.88925	-0.00045822	0.94299	0.00048592	0.053741	2.7693E-05	515.2943165669953	87.277	0.75543	84.65	84.448	85.204	-2.6269					22	14	3	0	0	0	0.027455	1	7460	7460		42.396	0	1	62246			48281	10628	40044	40071	51804	51804					0.05954779423313994
RGRAQDTW	8	Unmodified	_RGRAQDTW_					0	0	0			REV__chr20:57523278-57523663|387|98.74|0.27|8.51|-|2|CTCFL,CTCFL|2	REV__chr20:57523278-57523663|387|98.74|0.27|8.51|-|2|CTCFL,CTCFL|2	MULTI-MSMS	OvCa9_classI_Rep3	3	495.2494201660156	2	495.249215	988.483876	1.2613	0.00062465	-3.0167	-0.001494	-1.7554	-0.00086936	495.2476222924242	123.74	0.97863	122.7	122.41	123.39	-1.0377					41	18	4	0	0	0	0.75241	1	9572	9572		25.45	2.4077	1	133150	+		48282	16025	40045	40072	51805	51805					-0.010826358163626537
RGRARLCPE	9	Unmodified	_RGRARLCPE_					0	0	0		nc|ENSG00000124587|Q13608-2|PEX6;nc|ENSG00000124587|Q13608-3|PEX6;ENSG00000124587|ENST00000304611|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	nc|ENSG00000124587|Q13608-2|PEX6	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.8201293945312	2	529.287817	1056.56108	-0.94566	-0.00050052	-1.3253	-0.00070145	-2.2709	-0.001202	529.2867992395675	73.957	0.84132	71.986	71.43	72.271	-1.9711					21	15	2	0	0	0	0.027462	1	5980	5980		26.693	0	1	16174			48283	3663	40046	40073	51806	51806					0.03506259128334932
RGRAVGVP	8	Unmodified	_RGRAVGVP_					0	0	0		ENST00000306467.9_1_5:122754157-122758966:-|nuORF;ENST00000515110.1_1_5:122758190-122758966:-|nuORF	ENST00000306467.9_1_5:122754157-122758966:-|nuORF	ENST00000306467.9_1_5:122754157-122758966:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	406.2480163574219	2	406.248486	810.48242	-1.2292	-0.00049936	1.4085	0.00057221	0.17932	7.285E-05	406.24894809520566	140.8	1.576	139.77	139.38	140.96	-1.0339					88	31	4	0	0	0	0.75915	1	11598	11598		20.482	0	1	902300			48284	10244	40047	40074	51807	51807					0.06959774885558545
RGRCRGPL	8	Unmodified	_RGRCRGPL_					0	0	0			REV__ENST00000409378.1_2_2:113955459-113958790:+|nuORF	REV__ENST00000409378.1_2_2:113955459-113958790:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	457.7796936035156	2	457.758695	913.502838	-1.8607	-0.00085173	-3.5999	-0.0016479	-5.4606	-0.0024996	457.7569376081696	49.899	1.7496	46.758	46.507	48.256	-3.1416					101	33	5	0	0	0	0.028476	1	2998	2998		60.294	7.9948	1	729260	+		48285	23836	40048	40075	51808	51808					0.04262622273722627
RGREMPIHSA	10	Unmodified	_RGREMPIHSA_					0	0	0			REV__ENST00000435960.5_2_2:101033382-101033737:-|nuORF	REV__ENST00000435960.5_2_2:101033382-101033737:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	577.2971801757812	2	577.298381	1152.58221	-4.016	-0.0023184	2.8528	0.0016469	-1.1633	-0.00067156	577.2997647971449	152.27	1.3348	150.84	150.5	151.83	-1.435					39	28	2	0	0	0	0.69073	1	15095	15095		31.53	4.8369	1	34792	+		48286	25780	40049	40076	51809	51809					0.012022244372019486
RGRGATAVRL	10	Unmodified	_RGRGATAVRL_					0	0	0		ENST00000366756.3_1_6:170597857-170599216:-|nuORF	ENST00000366756.3_1_6:170597857-170599216:-|nuORF	ENST00000366756.3_1_6:170597857-170599216:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	528.8192749023438	2	528.822881	1055.63121	-0.71785	-0.00037962	-3.3283	-0.0017601	-4.0462	-0.0021397	528.8209765807109	73.376	1.4125	70.976	70.378	71.79	-2.3999					70	26	4	0	0	0	0.55359	1	5974	5974		47.657	3.5405	1	825140			48287	10827	40050	40077	51810	51810					0.10561880788463895
RGRGTLVAKPP	11	Unmodified	_RGRGTLVAKPP_					0	0	0			REV__ENST00000377126.3_1_9:73028952-73029021:-|nuORF	REV__ENST00000377126.3_1_9:73028952-73029021:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	576.3538208007812	2	576.354014	1150.69348	-0.5103	-0.00029411	-0.49695	-0.00028642	-1.0073	-0.00058053	576.3538085628105	72.001	4.4609	69.399	69.081	73.542	-2.6023					248	89	5	0	0	0	0.48812	1	3401	3401		54.722	5.2808	1	7516400	+		48288	25115	40051	40078	51811	51811					0.1241560713679064
RGRGTLVAKPP	11	Unmodified	_RGRGTLVAKPP_					0	0	0			REV__ENST00000377126.3_1_9:73028952-73029021:-|nuORF	REV__ENST00000377126.3_1_9:73028952-73029021:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	576.3549194335938	2	576.354014	1150.69348	-1.6325	-0.0009409	0.36768	0.00021191	-1.2648	-0.00072899	576.3541628827252	73.012	2.7388	69.615	69.301	72.04	-3.3961					157	56	5	0	0	0	0.56391	1	5635	5635		47.96	0.30219	1	5280500	+		48289	25115	40051	40078	51812	51812					0.1241560713679064
RGRIDDLR	8	Unmodified	_RGRIDDLR_					0	0	0		ENSG00000112996|ENST00000507110|MRPS30	ENSG00000112996|ENST00000507110|MRPS30	ENSG00000112996|ENST00000507110|MRPS30	MULTI-MSMS	OvCa99_classI_Rep5	1	500.78582763671875	2	500.785964	999.557376	2.5931	0.0012986	1.304	0.000653	3.8971	0.0019516	500.7862974690332	86.517	0.86475	86.517	86.231	87.096	0					54	20	5	0	0	0	0.67745	1	9170	9170		47.916	0	1	4015300			48290	2943	40052	40079	51813	51813					0.05757912626120287
RGRLPISAS	9	Unmodified	_RGRLPISAS_					0	0	0		ENST00000525531.5_1_11:117070387-117070495:+|nuORF	ENST00000525531.5_1_11:117070387-117070495:+|nuORF	ENST00000525531.5_1_11:117070387-117070495:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	478.78497314453125	2	478.785433	955.556313	-3.0173	-0.0014446	2.9044	0.0013906	-0.11287	-5.4041E-05	478.78669233564773	146.16	1.5937	145.21	144.8	146.39	-0.95947					82	31	4	0	0	0	0.56889	1	12247	12247		35.618	5.1146	1	384210			48291	13196	40053	40080	51814	51814					0.0767569825721921
RGRPVLGG	8	Unmodified	_RGRPVLGG_					0	0	0			REV__ENST00000262995.8_1_4:144257940-144258054:+|nuORF	REV__ENST00000262995.8_1_4:144257940-144258054:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	406.248779296875	2	406.248486	810.48242	1.9995	0.00081228	-1.9505	-0.00079239	0.048949	1.9885E-05	406.2475600842221	141.22	1.3094	139.76	139.45	140.76	-1.4627					69	24	4	0	0	0	0.74595	1	13799	13799		14.664	0.88877	1	437180	+		48292	23988	40054	40081	51815	51815					0.06959774885569914
RGRQPLTV	8	Unmodified	_RGRQPLTV_					0	0	0		ENSG00000280267|ENST00000624207|PRAMEF26;ENSG00000239810|ENST00000619922|PRAMEF11;ENSG00000229571|ENST00000619661|PRAMEF25;ENSG00000204501|ENST00000376152|PRAMEF15	ENSG00000280267|ENST00000624207|PRAMEF26	ENSG00000280267|ENST00000624207|PRAMEF26	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.7801208496094	2	463.780151	925.545748	-1.1938	-0.00055368	1.1295	0.00052383	-0.064358	-2.9848E-05	463.7805701405269	40.979	1.4572	38.025	37.685	39.142	-2.9541					74	27	4	0	0	0	0.745	1	1804	1804		29.15	1.2673	1	433320			48293	8993	40055	40082	51816	51816					0.07999715602784363
RGRQTSSWP	9	Unmodified	_RGRQTSSWP_					0	0	0		ENST00000473958.1_1_3:128208751-128208913:+|nuORF;ENST00000468377.1_1_3:128208751-128220524:+|nuORF	ENST00000473958.1_1_3:128208751-128208913:+|nuORF	ENST00000473958.1_1_3:128208751-128208913:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.8054809570312	2	537.775597	1073.53664	-1.0262	-0.00055189	0.83953	0.00045148	-0.18671	-0.00010041	537.7758752003596	64.456	0.7899	61.731	61.286	62.076	-2.7245					21	14	2	0	0	0	0.027462	1	4925	4925		23.042	0	1	61919			48294	12329	40056	40083	51817	51817					0.002813222464737919
RGRRGAAVLPA	11	Unmodified	_RGRRGAAVLPA_					0	0	0			REV__PCCA-MBNL2|5|fusion	REV__PCCA-MBNL2|5|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3436889648438	2	562.343981	1122.67341	1.2434	0.00069921	-2.2131	-0.0012445	-0.96974	-0.00054533	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.70518	1	14214	14214		27.882	5.9224	1	683710	+		48295	21880	40057	40084	51818	51818					0.11697856196838075
RGRRLPALAGG	11	Unmodified	_RGRRLPALAGG_					0	0	0		ENST00000550208.1_1_14:105714663-105714873:-|nuORF	ENST00000550208.1_1_14:105714663-105714873:-|nuORF	ENST00000550208.1_1_14:105714663-105714873:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3434448242188	2	562.343981	1122.67341	1.2434	0.00069921	-2.2131	-0.0012445	-0.96974	-0.00054533	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.72466	1	14022	14022		19.997	0.6368	1	683710			48296	13582	40058	40085	51819	51819					0.11697856196815337
RGRRRQPRRL	10	Unmodified	_RGRRRQPRRL_					0	0	0			REV__ENST00000376511.6_1_6:30574014-30574328:-|nuORF	REV__ENST00000376511.6_1_6:30574014-30574328:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.2703552246094	3	450.951976	1349.8341	0.79436	0.00035822	1.3917	0.00062761	2.1861	0.00098583	451.2853603038015	61.678	0.18531	58.22	58.151	58.336	-3.4577					5	3	2	0	0	0	0.027117	1	4237	4237		16.007	0	1	28318	+		48297	25101	40059	40086	51820	51820					0.17317623633584844
RGRSINLAL	9	Unmodified	_RGRSINLAL_					0	0	0		ENST00000481087.1_1_1:241712984-241718974:+|nuORF;ENST00000484229.1_1_1:241695702-241713185:+|nuORF;nc|ENSG00000117009|O15229-3|KMO;KMO|p.A434Lfs*21|1|0.07|ENSG00000117009|chr1:241591991-241591992|-/CT|frameshift_variant;nc|ENSG00000117009|O15229-2|KMO;KMO|p.A434Sfs*52|1|0.07|ENSG00000117009|chr1:241591990-241591991|-/C|frameshift_variant;ENSG00000117009|ENST00000366559|KMO	ENST00000481087.1_1_1:241712984-241718974:+|nuORF	ENST00000481087.1_1_1:241712984-241718974:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	500.3057556152344	2	500.306532	998.598512	0.39617	0.00019821	-0.80851	-0.0004045	-0.41234	-0.0002063	500.3060378251117	45.763	1.1799	45.763	45.496	46.676	0					47	26	4	0	0	0	0.55588	1	3179	3179		37.159	0	1	3817400			48298	3229	40060	40087	51821	51821					0.09915673665580016
RGRSLHPVI	9	Unmodified	_RGRSLHPVI_					0	0	0		nc|ENSG00000173338|Q9Y2U2-2|KCNK7;nc|ENSG00000173338|Q9Y2U2-3|KCNK7;ENSG00000173338|ENST00000340313|KCNK7	nc|ENSG00000173338|Q9Y2U2-2|KCNK7	nc|ENSG00000173338|Q9Y2U2-2|KCNK7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.8197631835938	2	517.814525	1033.6145	0.70041	0.00036268	-3.1457	-0.0016289	-2.4453	-0.0012662	517.8131372547093	37.237	0.30013	34.345	34.192	34.492	-2.8925					8	5	2	0	0	0	0.027462	1	1339	1339		12.959	5.7658	1	63513			48299	7369	40061	40088	51822	51822					0.09903379902493725
RGRVCFEM	8	Unmodified	_RGRVCFEM_					0	0	0		ENST00000594207.1_1_19:41774132-41786840:+|nuORF;nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;FXYD5-HNRNPUL1|1|fusion;ENSG00000105323|ENST00000392006|HNRNPUL1	ENST00000594207.1_1_19:41774132-41786840:+|nuORF	ENST00000594207.1_1_19:41774132-41786840:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.2574768066406	2	499.238947	996.46334	-0.41874	-0.00020905	0.11959	5.9706E-05	-0.29915	-0.00014935	499.2389072982965	60.037	0.80671	60.037	59.839	60.646	0					28	19	2	0	0	0	0.028476	1	5245	5245		16.473	0	1	307210			48300	2441	40062	40089	51823	51823					-0.035032657920169186
RGRVFLFI	8	Unmodified	_RGRVFLFI_					0	0	0			REV__tr|A0A553SP33|A0A553SP33_NIACIFlagellarM-ringproteinOS=NialliacirculansOX=1397GN=fliFPE=3SV=1	REV__tr|A0A553SP33|A0A553SP33_NIACIFlagellarM-ringproteinOS=NialliacirculansOX=1397GN=fliFPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	504.3101501464844	2	504.311087	1006.60762	0.84701	0.00042715	-2.7167	-0.0013701	-1.8697	-0.00094293	504.3095626298887	121.76	1.205	120.73	120.43	121.64	-1.0286					54	22	3	0	0	0	0.7043	1	9350	9350		42.474	12.157	1	146370	+		48301	30485	40063	40090	51824	51824					0.1045806702192067
RGRVRALRL	9	Unmodified	_RGRVRALRL_					0	0	0		ENSG00000171695|ENST00000302096|LKAAEAR1;nc|ENSG00000171695|Q8TD35-2|LKAAEAR1	ENSG00000171695|ENST00000302096|LKAAEAR1	ENSG00000171695|ENST00000302096|LKAAEAR1	MULTI-MSMS	OvCa99_classI_Rep5	1	548.8642578125	2	548.862341	1095.71013	1.4956	0.00082086	2.5905	0.0014218	4.0861	0.0022427	548.8635876207694	87.51	0.62404	87.51	87.257	87.881	0					30	14	3	0	0	0	0.40667	1	9259	9259		51.335	3.6781	1	1727300			48302	7224	40064	40091	51825	51825					0.16610152813404966
RGRWLPSR	8	Unmodified	_RGRWLPSR_					0	0	0		ENST00000585421.5_1_17:76850910-76850997:-|nuORF	ENST00000585421.5_1_17:76850910-76850997:-|nuORF	ENST00000585421.5_1_17:76850910-76850997:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.8150634765625	2	514.299042	1026.58353	-0.44563	-0.00022919	-2.1875	-0.001125	-2.6331	-0.0013542	514.2982279085494	74.9	0.51601	72.929	72.796	73.312	-1.9711					15	9	2	0	0	0	0.028476	1	6172	6172		35.618	11.099	1	11043			48303	14030	40065	40092	51826	51826					0.07130226588242294
RGSALPLAI	9	Unmodified	_RGSALPLAI_					0	0	0		ENSG00000221866|ENST00000321063|PLXNA4;ENST00000493546.1_1_X:153697446-153699024:+|nuORF;nc|ENSG00000221866|Q9HCM2-4|PLXNA4;ENST00000503234.5_1_3:126746482-126752857:+|nuORF;ENSG00000114554|ENST00000393409|PLXNA1;PLXNA3|p.L1776Rfs*78|1|0.25|ENSG00000130827|chrX:154471271-154471275|CTGCT/-|frameshift_variant;ENSG00000130827|ENST00000369682|PLXNA3;PLXNA2|p.A1834Efs*28|1|0.04|ENSG00000076356|chr1:208028099-208028100|-/CTGCCGCCGTGCCTGCTCATCCTGCTCT|frameshift_variant;ENSG00000076356|ENST00000367033|PLXNA2	ENSG00000221866|ENST00000321063|PLXNA4;ENSG00000114554|ENST00000393409|PLXNA1;PLXNA2|p.A1834Efs*28|1|0.04|ENSG00000076356|chr1:208028099-208028100|-/CTGCCGCCGTGCCTGCTCATCCTGCTCT|frameshift_variant	ENSG00000114554|ENST00000393409|PLXNA1	MULTI-MSMS	OvCa99_classI_Rep5	1	449.27972412109375	2	449.279452	896.544351	2.4505	0.001101	0.41322	0.00018565	2.8637	0.0012866	449.27972872316013	85.21	0.74191	85.21	84.963	85.705	0					40	17	4	0	0	0	0.46377	1	8936	8936		45.952	3.5558	1	1091900			48304	3028;9231;1556	40066	40093	51827	51827					0.09194081514021946
RGSALPLAI	9	Unmodified	_RGSALPLAI_					0	0	0		ENSG00000221866|ENST00000321063|PLXNA4;ENST00000493546.1_1_X:153697446-153699024:+|nuORF;nc|ENSG00000221866|Q9HCM2-4|PLXNA4;ENST00000503234.5_1_3:126746482-126752857:+|nuORF;ENSG00000114554|ENST00000393409|PLXNA1;PLXNA3|p.L1776Rfs*78|1|0.25|ENSG00000130827|chrX:154471271-154471275|CTGCT/-|frameshift_variant;ENSG00000130827|ENST00000369682|PLXNA3;PLXNA2|p.A1834Efs*28|1|0.04|ENSG00000076356|chr1:208028099-208028100|-/CTGCCGCCGTGCCTGCTCATCCTGCTCT|frameshift_variant;ENSG00000076356|ENST00000367033|PLXNA2	ENSG00000221866|ENST00000321063|PLXNA4;ENSG00000114554|ENST00000393409|PLXNA1;PLXNA2|p.A1834Efs*28|1|0.04|ENSG00000076356|chr1:208028099-208028100|-/CTGCCGCCGTGCCTGCTCATCCTGCTCT|frameshift_variant	ENSG00000114554|ENST00000393409|PLXNA1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	449.279452	896.544351	-0.53751	-0.00024149	0.063052	2.8328E-05	-0.47446	-0.00021316	449.2794330700497	87.64	0.97803	85.463	85.19	86.168	-2.1768	0.12634	-0.00022603	NaN	45.952	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24849			48305	3028;9231;1556	40066	40093							0.09194081514021946
RGSDQETSPLR	11	Unmodified	_RGSDQETSPLR_					0	0	0			REV__ENSG00000095951|ENST00000379388|HIVEP1	REV__ENSG00000095951|ENST00000379388|HIVEP1	MULTI-MSMS	OvCa99_classI_Rep5	1	415.8777770996094	3	415.877586	1244.61093	0.47699	0.00019837	-0.44171	-0.0001837	0.035283	1.4673E-05	415.87731546856475	30.162	0.54755	30.162	29.935	30.483	0					28	10	4	0	0	0	0.66539	1	1139	1139		38.714	1.2059	1	411930	+		48306	17299	40067	40094	51828	51828					-0.0015937945267978648
RGSEVSGPELH	11	Unmodified	_RGSEVSGPELH_					0	0	0			REV__SEMA3G|p.V722Kfs*11|1|0.31|ENSG00000010319|chr3:52435789-52435790|-/AAGTCGGTCAGGTAGGCTCTTCTTA|frameshift_variant	REV__SEMA3G|p.V722Kfs*11|1|0.31|ENSG00000010319|chr3:52435789-52435790|-/AAGTCGGTCAGGTAGGCTCTTCTTA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	583.8041381835938	2	584.291276	1166.568	-1.6629	-0.00097163	1.7116	0.0010001	0.048657	2.843E-05	584.2901590775809	54.839	0.25582	51.592	51.439	51.695	-3.2474					5	4	2	0	0	0	0.025759	1	3411	3411		42.864	16.171	1	6401.2	+		48307	16478	40068	40095	51829	51829					-0.008621495100896936
RGSFFCSQCV	10	Unmodified	_RGSFFCSQCV_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN	REV__ENSG00000152818|ENST00000367545|UTRN	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.2881469726562	2	567.246969	1132.47938	1.3516	0.00076668	1.9741	0.0011198	3.3257	0.0018865	567.2479731802838	150.22	0.49709	150.22	150.05	150.54	0					17	9	2	0	0	0	0.027117	1	17590	17590		28.081	15.27	1	53346	+		48308	20306	40069	40096	51830	51830					-0.08155604345779466
RGSGSVLK	8	Unmodified	_RGSGSVLK_					0	0	0		ENST00000460601.5_1_20:57569750-57570100:+|nuORF;ENST00000602795.5_1_20:57569750-57570071:+|nuORF	ENST00000460601.5_1_20:57569750-57570100:+|nuORF	ENST00000460601.5_1_20:57569750-57570100:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	402.2414245605469	2	402.240327	802.466101	2.7225	0.0010951	-0.44789	-0.00018016	2.2746	0.00091495	402.2399492056139	33.465	2.392	30.677	30.259	32.651	-2.7881					87	47	3	0	0	0	0.75723	1	965	965		23.042	0	1	49985			48309	12153	40070	40097	51831	51831					0.05696648928790182
RGSLERLQ	8	Unmodified	_RGSLERLQ_					0	0	0		ENSG00000170049|ENST00000303790|KCNAB3	ENSG00000170049|ENST00000303790|KCNAB3	ENSG00000170049|ENST00000303790|KCNAB3	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.7749328613281	2	479.775065	957.535577	0.26282	0.0001261	-0.37625	-0.00018051	-0.11342	-5.4418E-05	479.774717348398	38.705	0.99234	35.778	35.552	36.544	-2.9264					39	19	3	0	0	0	0.66057	1	1535	1535		51.335	0	1	156610			48310	7069	40071	40098	51832	51832					0.055111078775553324
RGSLERLQ	8	Unmodified	_RGSLERLQ_					0	0	0		ENSG00000170049|ENST00000303790|KCNAB3	ENSG00000170049|ENST00000303790|KCNAB3	ENSG00000170049|ENST00000303790|KCNAB3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	479.775065	957.535577	-1.5813	-0.00075868	1.2748	0.00061161	-0.30654	-0.00014707	479.77573570059894	38.517	0.39493	35.807	35.667	36.062	-2.7097	0.014475	0.0013026	NaN	51.335	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24043			48311	7069	40071	40098							0.055111078775553324
RGSLLRPT	8	Unmodified	_RGSLLRPT_					0	0	0		ENST00000294072.8_2_11:61116428-61116869:-|nuORF	ENST00000294072.8_2_11:61116428-61116869:-|nuORF	ENST00000294072.8_2_11:61116428-61116869:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	450.274658203125	2	450.274701	898.534849	-3.7498	-0.0016884	3.5683	0.0016067	-0.18149	-8.172E-05	450.27623858459356	147.83	1.7988	146.88	146.5	148.3	-0.95119					100	35	5	0	0	0	0.75241	1	12513	12513		25.45	4.9683	1	751980			48312	10111	40072	40099	51833	51833					0.08152313228504227
RGSLLVIAI	9	Unmodified	_RGSLLVIAI_					0	0	0			REV__tr|A0A553SH09|A0A553SH09_NIACITeichuronicacidbiosynthesisproteinTuaEOS=NialliacirculansOX=1397GN=CEQ21_11935PE=4SV=1	REV__tr|A0A553SH09|A0A553SH09_NIACITeichuronicacidbiosynthesisproteinTuaEOS=NialliacirculansOX=1397GN=CEQ21_11935PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	471.3106994628906	2	471.310752	940.606951	-1.3467	-0.0006347	0.9748	0.00045943	-0.37187	-0.00017526	471.31115558776486	33.805	2.3785	31.096	30.823	33.201	-2.7097					116	47	5	0	0	0	0.55588	1	1350	1350		37.159	6.6555	1	1913400	+		48313	29761	40073	40100	51834	51834					0.13427227582224077
RGSLRLPT	8	Unmodified	_RGSLRLPT_					0	0	0			REV__ENSG00000182405|ENST00000397766|PGBD4	REV__ENSG00000182405|ENST00000397766|PGBD4	MULTI-MSMS	OvCa9_classI_Rep3	3	450.2745056152344	2	450.274701	898.534849	-3.7498	-0.0016884	3.5683	0.0016067	-0.18149	-8.172E-05	450.27623858459356	147.83	1.7988	146.88	146.5	148.3	-0.95119					100	35	5	0	0	0	0.75915	1	12507	12507		20.482	0	1	751980	+		48314	22291	40074	40101	51835	51835					0.08152313228504227
RGSLRVPLS	9	Unmodified	_RGSLRVPLS_					0	0	0		ENST00000251546.8_1_1:11721362-11721698:+|nuORF	ENST00000251546.8_1_1:11721362-11721698:+|nuORF	ENST00000251546.8_1_1:11721362-11721698:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	492.801025390625	2	492.801083	983.587613	-0.24793	-0.00012218	-0.089465	-4.4088E-05	-0.33739	-0.00016627	492.8009419082902	56.6	1.5858	53.796	53.175	54.761	-2.804					103	31	4	0	0	0	0.61365	1	3983	3983		30.318	1.1682	1	477380			48315	9799	40075	40102	51836	51836					0.09516271291306566
RGSLVQPR	8	Unmodified	_RGSLVQPR_					0	0	0			REV__nc|ENSG00000110697|O00562-2|PITPNM1	REV__nc|ENSG00000110697|O00562-2|PITPNM1	MULTI-MSMS	OvCa9_classI_Rep2	2	456.7724609375	2	456.772326	911.530098	1.8805	0.00085895	-0.14959	-6.8328E-05	1.7309	0.00079063	456.7712837632454	41.607	1.2326	38.897	38.586	39.818	-2.7097					57	24	4	0	0	0	0.74229	1	2196	2196		30.504	0	1	143280	+		48316	17996	40076	40103	51837	51837					0.07079429085740685
RGSSRWLLW	9	Unmodified	_RGSSRWLLW_					0	0	0			REV__TNFAIP8L3|p.I178Sfs*23|1|0.09|ENSG00000183578|chr15:51058229-51058229|C/-|frameshift_variant	REV__TNFAIP8L3|p.I178Sfs*23|1|0.09|ENSG00000183578|chr15:51058229-51058229|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.3554077148438	2	580.819807	1159.62506	-1.1018	-0.00063995	-3.441	-0.0019986	-4.5428	-0.0026386	580.8177412280859	25.967	0.44869	25.967	25.793	26.242	0					14	8	3	0	0	0	0.027462	1	626	626		20.482	0	1	169850	+		48317	29517	40077	40104	51838	51838					0.051633625569365904
RGSSVILHNL	10	Unmodified	_RGSSVILHNL_					0	0	0			REV__ENST00000577848.1_1_18:3655547-3655709:+|nuORF	REV__ENST00000577848.1_1_18:3655547-3655709:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.3474731445312	2	548.317097	1094.61964	0.89011	0.00048806	-1.7954	-0.00098444	-0.90527	-0.00049638	548.3156351802517	154.47	1.2932	154.47	153.88	155.17	0					29	25	2	0	0	0	0.026849	1	18064	18064		32.812	0	1	52919	+		48318	27798	40078	40105	51839	51839					0.07611638974458401
RGSYLTRH	8	Unmodified	_RGSYLTRH_					0	0	0		ZNF519|p.Q337R|1|0.06|ENSG00000175322|chr18:14105530-14105530|T/C|missense_variant	ZNF519|p.Q337R|1|0.06|ENSG00000175322|chr18:14105530-14105530|T/C|missense_variant	ZNF519|p.Q337R|1|0.06|ENSG00000175322|chr18:14105530-14105530|T/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.791259765625	2	495.267407	988.520262	0.099488	4.9273E-05	-0.85467	-0.00042329	-0.75519	-0.00037402	495.2656575714433	75.923	0.72476	72.984	72.545	73.27	-2.9389					30	14	4	0	0	0	0.028476	1	6027	6027		37.159	3.6435	1	53295			48319	36322	40079	40106	51840	51840					0.02554241080349584
RGTALLMSLD	10	Unmodified	_RGTALLMSLD_					0	0	0		ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.2913818359375	2	538.792066	1075.56958	-0.026427	-1.4239E-05	-0.55343	-0.00029818	-0.57986	-0.00031242	538.7915854227599	60.889	0.84159	60.889	60.314	61.156	0					26	19	2	0	0	0	0.026681	1	5328	5328		44.377	0	1	468270			48320	8123	40080	40107	51841	51841					0.03481768254300732
RGTEKRRVLL	10	Unmodified	_RGTEKRRVLL_					0	0	0		ENSG00000173825|ENST00000309880|TIGD3	ENSG00000173825|ENST00000309880|TIGD3	ENSG00000173825|ENST00000309880|TIGD3	MULTI-MSMS	OvCa9_classI_Rep3	3	614.3855590820312	2	614.385845	1226.75714	-4.8757	-0.0029956	3.7065	0.0022772	-1.1692	-0.00071831	614.3879084256669	157.16	1.131	155.99	155.65	156.79	-1.1707					59	27	4	0	0	0	0.67931	1	13547	13547		32.812	9.2897	1	104880			48321	7417	40081	40108	51842	51842					0.15282967573898532
RGTGWPIGAL	10	Unmodified	_RGTGWPIGAL_					0	0	0			REV__ENST00000368013.7_1_1:161039413-161039701:-|nuORF	REV__ENST00000368013.7_1_1:161039413-161039701:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.2861938476562	2	514.287808	1026.56106	2.0817	0.0010706	-3.5251	-0.0018129	-1.4434	-0.00074234	514.285848241367	130.08	1.0822	128.61	128.31	129.4	-1.4779					46	21	3	0	0	0	0.58282	1	12492	12492		44.117	3.5442	1	91366	+		48322	24911	40082	40109	51843	51843					0.04884582399995452
RGTIKKNQN	9	Unmodified	_RGTIKKNQN_					0	0	0		tr|A0A7D6VXS5|A0A7D6VXS5_9CLOTLargeribosomalsubunitassemblyfactorBipAOS=ClostridiumintestinaleOX=36845GN=typAPE=3SV=1	tr|A0A7D6VXS5|A0A7D6VXS5_9CLOTLargeribosomalsubunitassemblyfactorBipAOS=ClostridiumintestinaleOX=36845GN=typAPE=3SV=1	tr|A0A7D6VXS5|A0A7D6VXS5_9CLOTLargeribosomalsubunitassemblyfactorBipAOS=ClostridiumintestinaleOX=36845GN=typAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.8031616210938	2	529.806897	1057.59924	-1.3206	-0.00069964	-0.36117	-0.00019135	-1.6817	-0.00089099	529.8038544668168	106.03	2.0556	104.01	103.55	105.6	-2.0161					158	39	6	0	0	0	0.42576	1	9610	9610		49.536	0	1	4614300			48323	35300	40083	40110	51844	51844					0.07274468314653859
RGTPCQSVL	9	Unmodified	_RGTPCQSVL_					0	0	0			REV__nc|ENSG00000230246|P0DKV0-2|SPATA31C1	REV__nc|ENSG00000230246|P0DKV0-2|SPATA31C1	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.7501525878906	2	480.750201	959.48585	-2.0604	-0.00099055	1.2662	0.00060872	-0.79423	-0.00038183	480.7508123397447	49.386	2.9185	46.245	45.99	48.908	-3.1416					151	56	4	0	0	0	0.51865	1	2842	2842		40.778	2.9666	1	3063100	+		48324	29145	40084	40111	51845	51845					0.004486568772449573
RGTSFVRL	8	Unmodified	_RGTSFVRL_					0	0	0			REV__ENST00000483602.1_1_2:241534571-241535939:+|nuORF	REV__ENST00000483602.1_1_2:241534571-241535939:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	468.2747802734375	2	468.274701	934.534849	-0.18832	-8.8183E-05	-0.20064	-9.3953E-05	-0.38895	-0.00018214	468.27446162973536	44.718	1.1836	44.718	44.44	45.624	0					57	26	4	0	0	0	0.50747	1	3042	3042		76.774	5.4784	1	1133200	+		48325	19783	40085	40112	51846	51846					0.06496313228524286
RGTTHDISVL	10	Unmodified	_RGTTHDISVL_					0	0	0			REV__tr|A0A553SSP5|A0A553SSP5_NIACIMolybdopterinmolybdenumtransferaseOS=NialliacirculansOX=1397GN=CEQ21_03380PE=3SV=1	REV__tr|A0A553SSP5|A0A553SSP5_NIACIMolybdopterinmolybdenumtransferaseOS=NialliacirculansOX=1397GN=CEQ21_03380PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.8651123046875	2	549.798737	1097.58292	-0.5017	-0.00027583	0.69195	0.00038044	0.19025	0.0001046	549.7995643818339	56.097	0.45638	56.097	55.764	56.22	0					14	10	2	0	0	0	0.026849	1	4596	4596		25.574	0	1	212810	+		48326	30860	40086	40113	51847	51847					0.03803342357900874
RGTYTPPVLS	10	Unmodified	_RGTYTPPVLS_					0	0	0		ENST00000361470.3_1_X:75648184-75648415:+|nuORF	ENST00000361470.3_1_X:75648184-75648415:+|nuORF	ENST00000361470.3_1_X:75648184-75648415:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.7954711914062	2	545.798206	1089.58186	-1.0542	-0.00057539	3.2345	0.0017654	2.1803	0.00119	545.798354390061	88.91	2.8172	86.307	85.882	88.7	-2.6027					128	55	5	0	0	0	0.49558	1	7597	7597		54.776	1.4249	1	806000			48327	10797	40087	40114	51848	51848					0.04065127988974382
RGVAPRVN	8	Unmodified	_RGVAPRVN_					0	0	0		nc|ENSG00000144115|Q86YJ6-3|THNSL2;nc|ENSG00000144115|Q86YJ6-2|THNSL2;nc|ENSG00000144115|Q86YJ6-4|THNSL2;ENSG00000144115|ENST00000674334|THNSL2	nc|ENSG00000144115|Q86YJ6-3|THNSL2	nc|ENSG00000144115|Q86YJ6-3|THNSL2	MULTI-MSMS	OvCa9_classI_Rep4_	4	434.75970458984375	2	434.759218	867.503883	3.5305	0.0015349	-3.4726	-0.0015098	0.05787	2.516E-05	434.7576043872035	134.83	0.98985	133.28	133.02	134.01	-1.5437					40	19	3	0	0	0	0.71369	1	13071	13071		40.573	0	1	52300			48328	5129	40088	40115	51849	51849					0.06483159914273529
RGVAPRVN	8	Unmodified	_RGVAPRVN_					0	0	0		nc|ENSG00000144115|Q86YJ6-3|THNSL2;nc|ENSG00000144115|Q86YJ6-2|THNSL2;nc|ENSG00000144115|Q86YJ6-4|THNSL2;ENSG00000144115|ENST00000674334|THNSL2	nc|ENSG00000144115|Q86YJ6-3|THNSL2	nc|ENSG00000144115|Q86YJ6-3|THNSL2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	434.759218	867.503883	0.45346	0.00019715	-0.48143	-0.0002093	-0.027964	-1.2157E-05	434.75892221108325	133.5	0.69116	133.27	132.92	133.61	-0.22696	-0.064627	0.00055376	NaN	40.573	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14838			48329	5129	40088	40115							0.06483159914273529
RGVAPRVN	8	Unmodified	_RGVAPRVN_					0	0	0		nc|ENSG00000144115|Q86YJ6-3|THNSL2;nc|ENSG00000144115|Q86YJ6-2|THNSL2;nc|ENSG00000144115|Q86YJ6-4|THNSL2;ENSG00000144115|ENST00000674334|THNSL2	nc|ENSG00000144115|Q86YJ6-3|THNSL2	nc|ENSG00000144115|Q86YJ6-3|THNSL2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	434.759218	867.503883	-0.21446	-9.3239E-05	0.056016	2.4353E-05	-0.15845	-6.8886E-05	434.75920598299894	134.58	0.98837	133.46	133.16	134.15	-1.1226	0.11776	0.0010211	NaN	40.573	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29904			48330	5129	40088	40115							0.06483159914273529
RGVERLKR	8	Unmodified	_RGVERLKR_					0	0	0			REV__ENST00000269142.9_1_18:23806638-23806755:+|nuORF	REV__ENST00000269142.9_1_18:23806638-23806755:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.31890869140625	2	507.319974	1012.6254	0.53325	0.00027053	-0.77707	-0.00039422	-0.24382	-0.00012369	507.319457072756	34.757	1.2525	31.968	31.698	32.95	-2.7881					50	24	3	0	0	0	0.73205	1	1053	1053		35.618	3.6634	1	167550	+		48331	24062	40089	40116	51850	51850					0.11958782276781221
RGVERLKR	8	Unmodified	_RGVERLKR_					0	0	0			REV__ENST00000269142.9_1_18:23806638-23806755:+|nuORF	REV__ENST00000269142.9_1_18:23806638-23806755:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	507.319974	1012.6254	-2.1288	-0.00108	2.2549	0.001144	0.1261	6.3975E-05	507.3210873571181	34.955	0.59238	32.245	32.059	32.651	-2.7097	0.13832	0.0020063	NaN	35.618	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35046	+		48332	24062	40089	40116							0.11958782276781221
RGVGGAPPT	9	Unmodified	_RGVGGAPPT_					0	0	0		ENSG00000123384|ENST00000243077|LRP1;LRP1|p.D1283Ifs*50|1|0.18|ENSG00000123384|chr12:57175962-57175962|G/-|frameshift_variant;LRP1|p.L1382Wfs*37|1|0.09|ENSG00000123384|chr12:57177192-57177192|G/-|frameshift_variant	ENSG00000123384|ENST00000243077|LRP1	ENSG00000123384|ENST00000243077|LRP1	MULTI-SECPEP	OvCa9_classI_Rep3	3	407.2189025878906	2	406.224677	810.434801	1.2909	0.00052438	-2.319	-0.00094202	-1.0281	-0.00041763	406.22373698902953	104.15	0.67717	102.71	102.45	103.12	-1.4347					17	12	2	0	0	0	0.027462	1	7238	7238		11.511	0	1	28549			48333	3592	40090	40117	51851	51851					0.022000758947001486
RGVGLSRGR	9	Unmodified	_RGVGLSRGR_					0	0	0			REV__ENST00000601438.2_1_19:47724101-47724386:-|nuORF	REV__ENST00000601438.2_1_19:47724101-47724386:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	479.2882080078125	2	479.288674	956.562795	1.7631	0.00084502	-1.8615	-0.0008922	-0.098445	-4.7184E-05	479.2876787398958	28.181	0.755	25.471	25.294	26.049	-2.7097					33	15	3	0	0	0	0.22621	1	573	573		71.877	0.58177	1	110940	+		48334	28036	40091	40118	51852	51852					0.08277636208606509
RGVKVFAV	8	Unmodified	_RGVKVFAV_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	438.27783203125	2	438.276712	874.538872	1.1374	0.00049851	-1.1676	-0.00051175	-0.030205	-1.3238E-05	438.27613755563544	62.748	1.5164	62.748	62.418	63.935	0					97	37	5	0	0	0	0.61758	2	5642	5582;5642		60.294	13.528	1	20685000			48335	6293	40092	40119	51853;51854	51854					0.09658402722220671
RGVLEGDDV	9	Unmodified	_RGVLEGDDV_					0	0	0		ENST00000459751.1_1_10:13234503-13237290:+|nuORF;ENST00000481292.1_1_10:13237140-13243699:+|nuORF;ENSG00000065328|ENST00000378714|MCM10;nc|ENSG00000065328|Q7L590|MCM10	ENST00000459751.1_1_10:13234503-13237290:+|nuORF	ENST00000459751.1_1_10:13234503-13237290:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	479.32012939453125	2	480.243264	958.471974	-0.48048	-0.00023075	2.5956	0.0012465	2.1151	0.0010158	480.2443300994574	100.53	1.1073	98.922	98.706	99.814	-1.6053					34	21	2	0	0	0	0.027462	1	6898	6898		38.806	12.01	1	69721			48336	1323	40093	40120	51855	51855					-0.008922973501853448
RGVNKWMVY	9	Unmodified	_RGVNKWMVY_					0	0	0			REV__ENSG00000183034|ENST00000331427|OTOP2	REV__ENSG00000183034|ENST00000331427|OTOP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	577.363525390625	2	576.802768	1151.59098	-0.074167	-4.278E-05	3.0889	0.0017817	3.0147	0.0017389	576.8045563838391	115.22	0.25179	113.82	113.62	113.87	-1.3977					6	4	2	0	0	0	0.027462	1	10725	10725		18.324	4.5491	1	8881	+		48337	22336	40094	40121	51856	51856					0.021251980736678888
RGVPEVEGTGN	11	Unmodified	_RGVPEVEGTGN_					0	0	0		ENST00000435750.1_2_3:27410742-27410934:-|nuORF	ENST00000435750.1_2_3:27410742-27410934:-|nuORF	ENST00000435750.1_2_3:27410742-27410934:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.822265625	2	557.778002	1113.54145	1.4073	0.00078494	-2.8187	-0.0015722	-1.4114	-0.00078725	557.7766456227108	156.02	1.014	156.02	155.68	156.7	0					29	19	2	0	0	0	0.025528	1	18307	18307		28.081	0	1	35992			48338	11868	40095	40122	51857	51857					-0.010778384014201947
RGVPTKLGPLD	11	Unmodified	_RGVPTKLGPLD_					0	0	0			REV__nc|ENSG00000018189|Q7L099|RUFY3	REV__nc|ENSG00000018189|Q7L099|RUFY3	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.289794921875	2	576.840405	1151.66626	-0.2328	-0.00013429	0.20464	0.00011804	-0.028161	-1.6244E-05	576.8404644588652	72.965	0.39113	72.965	72.764	73.155	0					10	7	2	0	0	0	0.025418	1	7160	7160		40.058	4.9061	1	262770	+		48339	16529	40096	40123	51858	51858					0.09649078805750833
RGVRRHIR	8	Unmodified	_RGVRRHIR_					0	0	0		ENSG00000048405|ENST00000265827|ZNF800	ENSG00000048405|ENST00000265827|ZNF800	ENSG00000048405|ENST00000265827|ZNF800	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.2799072265625	2	525.331208	1048.64786	-1.2612	-0.00066255	3.2759	0.001721	2.0147	0.0010584	525.332955698908	44.223	0.446	44.223	44.038	44.484	0					14	9	2	0	0	0	0.028476	1	2982	2982		33.516	22.005	1	326640			48340	1156	40097	40124	51859	51859					0.12548426465059492
RGVVVLAKSF	10	Unmodified	_RGVVVLAKSF_					0	0	0		ENSG00000264006|ENST00000648824|AKR1C8	ENSG00000264006|ENST00000648824|AKR1C8	ENSG00000264006|ENST00000648824|AKR1C8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.806884765625	2	538.334759	1074.65496	-0.87779	-0.00047254	0.3263	0.00017566	-0.55149	-0.00029689	538.8366448404779	65.157	0.53104	61.671	61.456	61.987	-3.4854					14	10	2	0	0	0	0.027028	1	4708	4708		31.53	20.019	1	11957			48341	9516	40098	40125	51860	51860					0.12062301502260198
RGVVVLAKSF	10	Unmodified	_RGVVVLAKSF_					0	0	0		ENSG00000264006|ENST00000648824|AKR1C8	ENSG00000264006|ENST00000648824|AKR1C8	ENSG00000264006|ENST00000648824|AKR1C8	MULTI-MATCH	OvCa9_classI_Rep2	2		2	538.334759	1074.65496	-1.274	-0.00068583	0.72719	0.00039147	-0.54679	-0.00029436	538.3350385387962	64.192	0.47179	61.467	61.286	61.758	-2.7245	-0.10224	0.00021115	NaN	54.776	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12036			48342	9516	40098	40125							0.12062301502260198
RGVWNELPP	9	Unmodified	_RGVWNELPP_					0	0	0		nc|ENSG00000165626|Q8N7W2-2|BEND7;ENSG00000165626|ENST00000466271|BEND7;nc|ENSG00000165626|Q8N7W2-3|BEND7	nc|ENSG00000165626|Q8N7W2-2|BEND7	nc|ENSG00000165626|Q8N7W2-2|BEND7	MULTI-MSMS	OvCa9_classI_Rep2	2	534.284423828125	2	534.285266	1066.55598	-2.6253	-0.0014027	0.2567	0.00013715	-2.3686	-0.0012655	534.2853249457943	142.91	1.1362	142.68	142.26	143.4	-0.22696					49	22	3	0	0	0	0.65476	1	14370	14370		25.45	0	1	71580			48343	6580	40099	40126	51861	51861					0.025362785373545194
RGVYVLTAL	9	Unmodified	_RGVYVLTAL_					0	0	0		ENST00000390477.2_3_14:22934700-22934766:+|nuORF	ENST00000390477.2_3_14:22934700-22934766:+|nuORF	ENST00000390477.2_3_14:22934700-22934766:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	496.30108642578125	2	496.300384	990.586216	1.2461	0.00061845	-1.3256	-0.00065787	-0.079436	-3.9424E-05	496.29955522437075	123.03	1.3483	121.99	121.68	123.03	-1.0377					64	25	3	0	0	0	0.56889	1	9533	9533		35.618	6.4687	1	228980			48344	11204	40100	40127	51862	51862					0.09054637202530103
RGWARPCTL	9	Unmodified	_RGWARPCTL_					0	0	0			REV__ENST00000361337.2_1_20:39751926-39752103:+|nuORF	REV__ENST00000361337.2_1_20:39751926-39752103:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	530.2791137695312	2	530.27946	1058.54437	-1.1806	-0.00062605	-0.13442	-7.1282E-05	-1.315	-0.00069733	530.2791627233665	122.04	1.4342	121.82	121.08	122.51	-0.21803					61	28	3	0	0	0	0.55588	1	11803	11803		37.159	0.71236	1	120110	+		48345	24846	40101	40128	51863	51863					0.01743758242378135
RGWLGSFQP	9	Unmodified	_RGWLGSFQP_					0	0	0		ENST00000568394.1_1_16:1030490-1030955:-|nuORF	ENST00000568394.1_1_16:1030490-1030955:-|nuORF	ENST00000568394.1_1_16:1030490-1030955:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.7982788085938	2	524.272158	1046.52976	-1.3509	-0.00070822	-1.1398	-0.00059756	-2.4907	-0.0013058	524.2710101842339	40.908	0.5729	37.954	37.632	38.205	-2.9541					15	10	2	0	0	0	0.027462	1	1769	1769		14.865	0	1	43944			48346	13868	40102	40129	51864	51864					0.008360093659121048
RGWLVGFI	8	Unmodified	_RGWLVGFI_					0	0	0			REV__ENST00000472940.5_1_17:58008327-58013674:+|nuORF	REV__ENST00000472940.5_1_17:58008327-58013674:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.7647705078125	2	474.276712	946.538872	-0.57303	-0.00027177	0.49122	0.00023297	-0.081813	-3.8802E-05	474.2765730811953	39.689	0.16762	39.689	39.589	39.756	0					5	3	2	0	0	0	0.028476	1	2352	2352		28.254	13.59	1	53597	+		48347	26322	40103	40130	51865	51865					0.06346402722226685
RGWVKSRVFLF	11	Unmodified	_RGWVKSRVFLF_					0	0	0		ENST00000402506.5_1_7:2567604-2567793:+|nuORF	ENST00000402506.5_1_7:2567604-2567793:+|nuORF	ENST00000402506.5_1_7:2567604-2567793:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.60504150390625	3	465.606701	1393.79827	-0.19204	-8.9413E-05	-3.8341	-0.0017852	-4.0262	-0.0018746	465.6048829679583	21.88	1.1908	20.541	20.321	21.512	-1.3386					57	24	4	0	0	0	0.72464	1	219	219		20.315	2.4819	1	168570			48348	11429	40104	40131	51866	51866					0.11712728613338186
RGYLRVFFR	9	Unmodified	_RGYLRVFFR_					0	0	0		NDUFA12|p.E122Dfs*10|1|0.03|ENSG00000184752|chr12:94971512-94971513|-/G|frameshift_variant;ENSG00000184752|ENST00000327772|NDUFA12;nc|ENSG00000184752|Q9UI09-2|NDUFA12	NDUFA12|p.E122Dfs*10|1|0.03|ENSG00000184752|chr12:94971512-94971513|-/G|frameshift_variant	NDUFA12|p.E122Dfs*10|1|0.03|ENSG00000184752|chr12:94971512-94971513|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	404.9114990234375	3	405.236608	1212.688	1.5624	0.00063312	-2.6752	-0.0010841	-1.1128	-0.00045096	405.2355547278078	59.161	0.74738	55.769	55.451	56.199	-3.392					20	14	2	0	0	0	0.027462	1	3976	3976		39.253	2.8061	1	43902			48349	8189	40105	40132	51867	51867					0.09015928344956592
RGYLRVFFR	9	Unmodified	_RGYLRVFFR_					0	0	0		NDUFA12|p.E122Dfs*10|1|0.03|ENSG00000184752|chr12:94971512-94971513|-/G|frameshift_variant;ENSG00000184752|ENST00000327772|NDUFA12;nc|ENSG00000184752|Q9UI09-2|NDUFA12	NDUFA12|p.E122Dfs*10|1|0.03|ENSG00000184752|chr12:94971512-94971513|-/G|frameshift_variant	NDUFA12|p.E122Dfs*10|1|0.03|ENSG00000184752|chr12:94971512-94971513|-/G|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		3	405.236608	1212.688	0.87213	0.00035342	-1.5201	-0.000616	-0.64798	-0.00026258	405.2360385169771	58.337	0.70411	55.555	55.133	55.837	-2.7816	-0.10718	0.0010858	NaN	47.657	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54407			48350	8189	40105	40132							0.09015928344956592
RHAATFAPL	9	Unmodified	_RHAATFAPL_					0	0	0		ENSG00000255690|ENST00000539664|TRIL	ENSG00000255690|ENST00000539664|TRIL	ENSG00000255690|ENST00000539664|TRIL	MULTI-MSMS	OvCa9_classI_Rep2	2	492.2723083496094	2	492.274701	982.534849	-0.79248	-0.00039012	-3.748	-0.001845	-4.5405	-0.0022352	492.27281781556945	38.402	2.3795	35.692	35.32	37.7	-2.7097					117	47	5	0	0	0	0.55588	1	1854	1854		37.159	1.5408	1	1550300			48351	9460	40106	40133	51868	51868					0.04288313228505558
RHAEECRV	8	Unmodified	_RHAEECRV_					0	0	0		ENST00000544662.1_1_12:132413925-132416751:+|nuORF;ENST00000538037.5_1_12:132413837-132416751:+|nuORF	ENST00000544662.1_1_12:132413925-132416751:+|nuORF	ENST00000544662.1_1_12:132413925-132416751:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.7810363769531	2	500.243075	998.471597	-0.88032	-0.00044038	-2.0272	-0.0010141	-2.9075	-0.0014544	500.2413488038115	49.65	0.30564	49.65	49.418	49.723	0					11	6	3	0	0	0	0.028476	1	3696	3696		47.916	17.412	1	95316			48352	13418	40107	40134	51869	51869					-0.02769995551034299
RHAKQIFP	8	Unmodified	_RHAKQIFP_					0	0	0		ENSG00000156502|ENST00000359655|SUPV3L1	ENSG00000156502|ENST00000359655|SUPV3L1	ENSG00000156502|ENST00000359655|SUPV3L1	MULTI-MSMS	OvCa9_classI_Rep3	3	499.78790283203125	2	498.790518	995.566484	0.032773	1.6347E-05	-3.9839	-0.0019871	-3.9511	-0.0019708	498.78956440605833	118.98	1.288	117.95	117.58	118.87	-1.0271					73	25	4	0	0	0	0.73288	1	8977	8977		35.201	1.0282	1	100180			48353	5843	40108	40135	51870	51870					0.06852305982465623
RHALLRLRH	9	Unmodified	_RHALLRLRH_					0	0	0			REV__ENST00000270357.9_2_2:241508179-241513275:+|nuORF	REV__ENST00000270357.9_2_2:241508179-241513275:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	586.3675537109375	2	586.36779	1170.72103	0.2284	0.00013393	1.6693	0.00097881	1.8977	0.0011127	586.368761284623	92.323	2.3778	91.155	90.866	93.244	-1.168					141	45	5	0	0	0	0.36502	1	8237	8237		55.504	2.1528	1	1452400	+		48354	24068	40109	40136	51871	51871					0.14249555187666374
RHALLRLRH	9	Unmodified	_RHALLRLRH_					0	0	0			REV__ENST00000270357.9_2_2:241508179-241513275:+|nuORF	REV__ENST00000270357.9_2_2:241508179-241513275:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	586.3699951171875	2	586.36779	1170.72103	-2.3837	-0.0013977	4.4327	0.0025992	2.049	0.0012015	586.3702593938116	93.813	3.2699	91.852	91.476	94.746	-1.9617					176	64	5	0	0	0	0.38529	1	6067	6067		53.351	5.4358	1	1678300	+		48355	24068	40109	40136	51872	51872					0.14249555187666374
RHAPIRLH	8	Unmodified	_RHAPIRLH_					0	0	0			REV__nc|ENSG00000102271|Q9C0H6-2|KLHL4	REV__nc|ENSG00000102271|Q9C0H6-2|KLHL4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.8254089355469	2	500.301585	998.588616	-0.73247	-0.00036646	-0.70249	-0.00035146	-1.435	-0.00071791	500.30132398799446	62.845	0.72882	59.387	59.011	59.74	-3.4577					30	14	3	0	0	0	0.028476	1	4394	4394		47.916	14.4	1	162990	+		48356	28774	40110	40137	51873	51873					0.08926530450867176
RHARLMVRR	9	Unmodified	_RHARLMVRR_					0	0	0			REV__nc|ENSG00000110697|O00562-2|PITPNM1	REV__nc|ENSG00000110697|O00562-2|PITPNM1	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8563232421875	2	597.859275	1193.704	-2.7036	-0.0016164	-2.2292	-0.0013327	-4.9328	-0.0029491	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.63422	1	12438	12438		27.882	4.3595	1	591030	+		48357	17996	40111	40138	51874	51874					0.11489311310219819
RHARLMVRR	9	Unmodified	_RHARLMVRR_					0	0	0			REV__nc|ENSG00000110697|O00562-2|PITPNM1	REV__nc|ENSG00000110697|O00562-2|PITPNM1	MSMS	OvCa9_classI_Rep4_	4	597.8565063476562	2	597.859275	1193.704	NaN	NaN	NaN	NaN	NaN	NaN	NaN	150.51	1	149.08	148.58	149.58	-1.4344								0	0	0	0.24372	1	14869	14869		19.36	1.995	1		+		48358	17996	40111	40138	51875	51875					0.11489311310219819
RHCTRIYV	8	Unmodified	_RHCTRIYV_					0	0	0			REV__ENST00000595666.1_1_19:44301745-44302778:-|nuORF	REV__ENST00000595666.1_1_19:44301745-44302778:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	524.277587890625	2	524.27946	1046.54437	1.2201	0.00063968	-2.6923	-0.0014115	-1.4722	-0.00077183	524.2778574863617	62.52	2.1768	59.486	58.872	61.049	-3.0339					76	45	2	0	0	0	0.74229	1	2316	2316		30.504	2.6214	1	81064	+		48359	20630	40112	40139	51876	51876					0.022957582423941858
RHDGRVHGF	9	Unmodified	_RHDGRVHGF_					0	0	0			REV__ENSG00000142039|ENST00000269967|CCDC97	REV__ENSG00000142039|ENST00000269967|CCDC97	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.306884765625	2	540.775931	1079.53731	-0.32095	-0.00017356	-0.99077	-0.00053578	-1.3117	-0.00070934	540.7750786663139	42.762	0.43079	42.762	42.583	43.014	0					14	9	2	0	0	0	0.027462	1	2768	2768		40.778	11.629	1	88167	+		48360	19764	40113	40140	51877	51877					0.0007216168617105723
RHDSWAAFVE	10	Unmodified	_RHDSWAAFVE_					0	0	0			REV__nc|ENSG00000164796|Q7Z407-5|CSMD3	REV__nc|ENSG00000164796|Q7Z407-5|CSMD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	608.356689453125	2	609.288537	1216.56252	1.9539	0.0011905	1.7447	0.001063	3.6986	0.0022535	609.2888912947147	128	0.46622	128	127.76	128.23	0					12	9	2	0	0	0	0.02706	1	14803	14803		30.318	7.7381	1	48739	+		48361	21020	40114	40141	51878	51878					-0.037098283019076916
RHEFTEFV	8	Unmodified	_RHEFTEFV_					0	0	0		ENSG00000072315|ENST00000262839|TRPC5	ENSG00000072315|ENST00000262839|TRPC5	ENSG00000072315|ENST00000262839|TRPC5	MULTI-MSMS	OvCa9_classI_Rep2	2	532.7626342773438	2	532.761623	1063.50869	-0.45972	-0.00024492	3.3096	0.0017632	2.8498	0.0015183	532.7632052598339	112.88	3.504	112.76	111.98	115.49	-0.12174					139	70	3	0	0	0	0.72896	1	10753	10753		37.159	6.6555	1	216680			48362	1471	40115	40142	51879	51879					-0.020520007336244817
RHFKRILSLL	10	Unmodified	_RHFKRILSLL_					0	0	0		ALDH3A2|p.T470Lfs*7|1|0.03|ENSG00000072210|chr17:19671920-19671921|-/TT|frameshift_variant;ENSG00000072210|ENST00000176643|ALDH3A2;nc|ENSG00000072210|P51648-2|ALDH3A2;ENST00000472059.5_1_17:19558694-19578882:+|nuORF;ENST00000476965.5_1_17:19559657-19578882:+|nuORF	ALDH3A2|p.T470Lfs*7|1|0.03|ENSG00000072210|chr17:19671920-19671921|-/TT|frameshift_variant	ALDH3A2|p.T470Lfs*7|1|0.03|ENSG00000072210|chr17:19671920-19671921|-/TT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	428.27569580078125	3	428.275063	1281.80336	2.1984	0.00094153	-1.2749	-0.000546	0.92353	0.00039552	428.2744987527341	102.14	0.93929	102.14	101.87	102.81	0					70	21	5	0	0	0	0.58282	1	11369	11369		32.751	0	1	6434300			48363	59	40116	40143	51880	51880					0.17373032475984473
RHFPRKQF	8	Unmodified	_RHFPRKQF_					0	0	0		ENST00000295924.11_2_3:156396013-156396097:+|nuORF	ENST00000295924.11_2_3:156396013-156396097:+|nuORF	ENST00000295924.11_2_3:156396013-156396097:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	558.33349609375	2	558.314692	1114.61483	-0.28276	-0.00015787	-2.1878	-0.0012215	-2.4706	-0.0013794	558.8152881152945	56.388	0.74376	53.584	53.225	53.969	-2.804					21	14	2	0	0	0	0.028476	1	3931	3931		19.36	1.0356	1	9997.4			48364	10126	40117	40144	51881	51881					0.062107996223630835
RHFPRKQF	8	Unmodified	_RHFPRKQF_					0	0	0		ENST00000295924.11_2_3:156396013-156396097:+|nuORF	ENST00000295924.11_2_3:156396013-156396097:+|nuORF	ENST00000295924.11_2_3:156396013-156396097:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	558.314692	1114.61483	0.90067	0.00050286	-3.4274	-0.0019136	-2.5267	-0.0014107	558.3124321991613	57.024	1.1207	53.679	53.324	54.444	-3.3449	0.047469	-0.00055385	NaN	18.324	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24113			48365	10126	40117	40144							0.062107996223630835
RHFRLVHN	8	Unmodified	_RHFRLVHN_					0	0	0		ENSG00000181523|ENST00000326317|SGSH	ENSG00000181523|ENST00000326317|SGSH	ENSG00000181523|ENST00000326317|SGSH	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.8287963867188	2	539.804491	1077.59443	-0.10467	-5.6501E-05	3.9094	0.0021103	3.8048	0.0020538	540.3079004877632	71.169	0.55106	71.169	70.915	71.466	0					17	13	2	0	0	0	0.028476	1	6887	6887		26.796	11.931	1	414010			48366	7935	40118	40145	51882	51882					0.058736289625585414
RHGIHVDGW	9	Unmodified	_RHGIHVDGW_					0	0	0			REV__tr|A0A553SG09|A0A553SG09_NIACIDUF1679domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09890PE=3SV=1	REV__tr|A0A553SG09|A0A553SG09_NIACIDUF1679domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09890PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.7951049804688	2	538.772857	1075.53116	-1.3019	-0.00070145	0.52037	0.00028036	-0.78157	-0.00042109	538.7729658129933	123.98	0.85895	122.59	122.37	123.23	-1.3908					23	16	2	0	0	0	0.027462	1	11764	11764		19.997	0	1	38103	+		48367	29645	40119	40146	51883	51883					-0.0035835654534821515
RHHLGGPYEL	10	Unmodified	_RHHLGGPYEL_					0	0	0			REV__L1PA13_dup8637|chr21:8327096-8327843:-|2.0869428863339463|0.0016665760926509|10.29|371.0|25|3|sense	REV__L1PA13_dup8637|chr21:8327096-8327843:-|2.0869428863339463|0.0016665760926509|10.29|371.0|25|3|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	589.8135986328125	2	589.806897	1177.59924	0.039647	2.3384E-05	2.0214	0.0011922	2.0611	0.0012156	590.3085619266504	52.901	0.65023	52.901	52.61	53.26	0					43	14	4	0	0	0	0.42962	1	4170	4170		64.207	11.118	1	3215900	+		48368	28474	40120	40147	51884	51884					0.017544683146752504
RHHLGGPYEL	10	Unmodified	_RHHLGGPYEL_					0	0	0			REV__L1PA13_dup8637|chr21:8327096-8327843:-|2.0869428863339463|0.0016665760926509|10.29|371.0|25|3|sense	REV__L1PA13_dup8637|chr21:8327096-8327843:-|2.0869428863339463|0.0016665760926509|10.29|371.0|25|3|sense	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	589.806897	1177.59924	0.039647	2.3384E-05	2.0214	0.0011922	2.0611	0.0012156	590.3085619266504	52.901	0.65023	52.901	52.61	53.26	0	0	0	NaN	64.207	43	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3215900	+		48369	28474	40120	40147							0.017544683146752504
RHIKEALDD	9	Unmodified	_RHIKEALDD_					0	0	0			REV__nc|ENSG00000068878|Q14997-3|PSME4	REV__nc|ENSG00000068878|Q14997-3|PSME4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.3532104492188	2	548.790912	1095.56727	-0.45407	-0.00024919	3.2574	0.0017876	2.8033	0.0015384	548.7928831336974	83.124	0.92522	80.441	80.173	81.098	-2.6829					30	18	2	0	0	0	0.027462	1	6874	6874		34.173	9.6534	1	56382	+		48370	16860	40121	40148	51885	51885					0.023310558408411453
RHIKEALDD	9	Unmodified	_RHIKEALDD_					0	0	0			REV__nc|ENSG00000068878|Q14997-3|PSME4	REV__nc|ENSG00000068878|Q14997-3|PSME4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	548.790912	1095.56727	-1.4506	-0.00079606	4.5062	0.002473	3.0556	0.0016769	548.7936234944981	82.737	1.0921	80.441	79.988	81.081	-2.2963	-0.00029303	0.00054526	NaN	34.173	36	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44854	+		48371	16860	40121	40148							0.023310558408411453
RHIPCQLR	8	Carbamidomethyl (C)	_RHIPC(Carbamidomethyl (C))QLR_	RHIPC(1)QLR		RHIPC(42)QLR		0	1	0		SORBS3|p.Q462Pfs*54|1|0.12|ENSG00000120896|chr8:22569224-22569225|-/A|frameshift_variant	SORBS3|p.Q462Pfs*54|1|0.12|ENSG00000120896|chr8:22569224-22569225|-/A|frameshift_variant	SORBS3|p.Q462Pfs*54|1|0.12|ENSG00000120896|chr8:22569224-22569225|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.2987060546875	2	540.298185	1078.58182	-0.33982	-0.0001836	-0.64748	-0.00034983	-0.9873	-0.00053343	540.2979670747679	38.277	3.0652	35.351	34.907	37.972	-2.9264					190	60	5	0	0	0	0.7043	1	1453	1453		42.474	6.8562	1	3652900			48372	32843	40122	40149	51886	51886	375				0.04566849508000814
RHISLWGSI	9	Unmodified	_RHISLWGSI_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	ENSG00000123104|ENST00000381340|ITPR2	MULTI-MSMS	OvCa9_classI_Rep3	3	534.8012084960938	2	534.801083	1067.58761	1.4912	0.00079751	-1.5073	-0.00080609	-0.016055	-8.5861E-06	534.800052583582	68.925	1.398	66.111	65.813	67.211	-2.8144					53	27	3	0	0	0	0.48324	1	3030	3030		44.117	0	1	614880			48373	3571	40123	40150	51887	51887					0.05652271291319266
RHIYIKPLGP	10	Unmodified	_RHIYIKPLGP_					0	0	0			REV__ENST00000601772.1_1_19:19035054-19035967:+|nuORF	REV__ENST00000601772.1_1_19:19035054-19035967:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	597.358642578125	2	597.361308	1192.70806	-5.0217	-0.0029997	0.45711	0.00027306	-4.5646	-0.0027267	597.3613502692024	157	0.93945	156.78	156.54	157.48	-0.22696					63	26	4	0	0	0	0.75594	1	15975	15975		24.203	2.2429	1	80526	+		48374	17746	40124	40151	51888	51888					0.11941679284927886
RHKGPQLLY	9	Unmodified	_RHKGPQLLY_					0	0	0			REV__nc|ENSG00000196511|Q9H3S4-2|TPK1	REV__nc|ENSG00000196511|Q9H3S4-2|TPK1	MULTI-MSMS	OvCa9_classI_Rep2	2	556.3230590820312	2	556.322183	1110.62981	1.2043	0.00066999	1.0834	0.00060272	2.2877	0.0012727	556.32262440789	125.61	1.4815	125.38	125.01	126.49	-0.2359					75	29	4	0	0	0	0.44294	1	12234	12234		47.916	1.9636	1	284060	+		48375	22839	40125	40152	51889	51889					0.07892246699725547
RHKKKKTKP	9	Unmodified	_RHKKKKTKP_					0	0	0		ENST00000565559.5_2_15:42697105-42701567:+|nuORF	ENST00000565559.5_2_15:42697105-42701567:+|nuORF	ENST00000565559.5_2_15:42697105-42701567:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8818969726562	2	575.880199	1149.74584	-0.33635	-0.0001937	2.4703	0.0014226	2.1339	0.0012289	575.8816146863785	130.37	1.3721	129.25	128.83	130.21	-1.1121					69	27	4	0	0	0	0.70685	1	10387	10387		15.642	0.77694	1	151570			48376	13822	40126	40153	51890	51890					0.1769619027038516
RHKKKRKSR	9	Unmodified	_RHKKKRKSR_					0	0	0			REV__ENST00000468344.5_1_3:157827960-157854567:+|nuORF	REV__ENST00000468344.5_1_3:157827960-157854567:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	611.8273315429688	2	612.399622	1222.78469	-0.44011	-0.00026952	2.9606	0.0018131	2.5205	0.0015436	612.9045860112313	51.809	0.20651	51.809	51.747	51.953	0					5	4	2	0	0	0	0.027462	1	4037	4037		29.15	10.046	1	79565	+		48377	21857	40127	40154	51891	51891					0.18220915624760892
RHKLANLV	8	Unmodified	_RHKLANLV_					0	0	0			REV__ENSG00000174231|ENST00000304992|PRPF8	REV__ENSG00000174231|ENST00000304992|PRPF8	MULTI-MSMS	OvCa99_classI_Rep5	1	475.7977600097656	2	475.798343	949.582134	-0.82275	-0.00039146	-0.13696	-6.5166E-05	-0.95972	-0.00045663	475.79814007620735	36.557	0.80941	36.557	36.304	37.114	0					37	17	3	0	0	0	0.66704	1	1938	1938		50.025	4.0726	1	983510	+		48378	21818	40128	40155	51892	51892					0.10532592499509974
RHKLTLKDI	9	Unmodified	_RHKLTLKDI_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.K3074Sfs*10|1|0.27|ENSG00000187775|chr17:78461662-78461662|T/-|frameshift_variant;DNAH17|p.A3303Gfs*10|1|0.11|ENSG00000187775|chr17:78458634-78458635|-/ACACATCCACATCTGGCAC|frameshift_variant	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.7971801757812	2	562.35094	1122.68733	1.6192	0.00091056	0.34533	0.0001942	1.9645	0.0011048	562.3509134216674	81.523	1.616	81.523	81.12	82.736	0					96	38	4	0	0	0	0.027062	1	8501	8501		87.696	0	1	4307300			48379	8432	40129	40156	51893	51893					0.13089088905257995
RHLLATVF	8	Unmodified	_RHLLATVF_					0	0	0		ENST00000484693.1_1_6:30709216-30709507:-|nuORF;ENST00000484168.1_1_6:30709216-30709966:-|nuORF	ENST00000484693.1_1_6:30709216-30709507:-|nuORF	ENST00000484693.1_1_6:30709216-30709507:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	478.7852478027344	2	478.787444	955.560336	-2.4635	-0.0011795	-1.8767	-0.00089854	-4.3402	-0.0020781	478.7864521794397	145.79	1.5385	145.57	144.98	146.52	-0.22696					81	30	4	0	0	0	0.73288	2	14684	14684;14736		35.201	6.0512	1	230950			48380	12596	40130	40157	51894;51895	51894					0.0807778775093766
RHLLATVF	8	Unmodified	_RHLLATVF_					0	0	0		ENST00000484693.1_1_6:30709216-30709507:-|nuORF;ENST00000484168.1_1_6:30709216-30709966:-|nuORF	ENST00000484693.1_1_6:30709216-30709507:-|nuORF	ENST00000484693.1_1_6:30709216-30709507:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.78521728515625	2	478.787444	955.560336	-1.2107	-0.00057965	-3.1443	-0.0015054	-4.3549	-0.0020851	478.7858288212029	146.58	1.5256	145.15	144.7	146.22	-1.4357					68	29	4	0	0	0	0.75241	1	14448	14448		25.45	0	1	466310			48381	12596	40130	40157	51896	51896					0.0807778775093766
RHLLSYVVLR	10	Unmodified	_RHLLSYVVLR_					0	0	0		ENST00000348035.8_1_7:6442384-6442585:+|nuORF	ENST00000348035.8_1_7:6442384-6442585:+|nuORF	ENST00000348035.8_1_7:6442384-6442585:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	628.3823852539062	2	628.385314	1254.75608	NaN	NaN	NaN	NaN	NaN	NaN	NaN	152.22	1	150.79	150.29	151.29	-1.435								0	0	0	0.1384	1	15058	15058		25.574	0	1				48382	10635	40131	40158	51897	51897					0.13888753204969362
RHLNIVRDKIS	11	Unmodified	_RHLNIVRDKIS_					0	0	0		ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	MULTI-MSMS	OvCa9_classI_Rep3	3	450.93707275390625	3	450.936999	1349.78917	1.6146	0.00072808	-1.8052	-0.00081405	-0.19064	-8.5968E-05	450.9360997934693	63.19	1.2421	60.156	59.756	60.998	-3.0339					70	24	4	0	0	0	0.72297	1	2354	2354		21.78	0	1	192240			48383	4766	40132	40159	51898	51898					0.12826335257022947
RHLQLAVRN	9	Unmodified	_RHLQLAVRN_					0	0	0		ENSG00000184270|ENST00000331128|H2AC21	ENSG00000184270|ENST00000331128|H2AC21	ENSG00000184270|ENST00000331128|H2AC21	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8298950195312	2	553.830706	1105.64686	-0.8401	-0.00046527	-0.49633	-0.00027488	-1.3364	-0.00074015	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.62352	2	14396	14396;14432		29.15	6.1071	1	245610			48384	8141	40133	40160	51899;51900	51899					0.09826167305504896
RHLQLAVRN	9	Unmodified	_RHLQLAVRN_					0	0	0		ENSG00000184270|ENST00000331128|H2AC21	ENSG00000184270|ENST00000331128|H2AC21	ENSG00000184270|ENST00000331128|H2AC21	MULTI-MSMS	OvCa9_classI_Rep3	3	553.82958984375	2	553.830706	1105.64686	-3.0789	-0.0017052	1.7991	0.0009964	-1.2798	-0.00070877	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.6653	1	11702	11702		24.203	2.2429	1	308210			48385	8141	40133	40160	51901	51901					0.09826167305504896
RHLQLIAQK	9	Unmodified	_RHLQLIAQK_					0	0	0		ENSG00000174145|ENST00000309447|NWD2	ENSG00000174145|ENST00000309447|NWD2	ENSG00000174145|ENST00000309447|NWD2	MULTI-MSMS	OvCa99_classI_Rep5	1	553.8447265625	2	553.843282	1105.67201	0.15886	8.7986E-05	-0.11063	-6.1271E-05	0.048236	2.6715E-05	553.8431075807323	58.215	0.79038	58.215	57.984	58.774	0					39	18	3	0	0	0	0.50149	1	4939	4939		42.396	7.1954	1	1682500			48386	7442	40134	40161	51902	51902					0.12340222108082344
RHLSHPLTF	9	Unmodified	_RHLSHPLTF_					0	0	0		ENST00000463544.1_1_2:162275405-162275651:+|nuORF	ENST00000463544.1_1_2:162275405-162275651:+|nuORF	ENST00000463544.1_1_2:162275405-162275651:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.8284301757812	2	554.306532	1106.59851	-0.7245	-0.00040159	-2.9551	-0.001638	-3.6796	-0.0020396	554.80468620017	65.905	0.24333	62.42	62.325	62.569	-3.4854					6	4	2	0	0	0	0.027462	1	4771	4771		49.442	18.938	1	16494			48387	12228	40135	40162	51903	51903					0.04947673665583352
RHLSRFPIGS	10	Unmodified	_RHLSRFPIGS_					0	0	0		ENST00000391834.6_1_19:50372921-50373047:-|nuORF	ENST00000391834.6_1_19:50372921-50373047:-|nuORF	ENST00000391834.6_1_19:50372921-50373047:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	585.332275390625	2	585.330539	1168.64652	-0.42934	-0.00025131	0.19992	0.00011702	-0.22942	-0.00013429	585.3305106088432	50.994	0.85548	50.994	50.73	51.585	0					46	19	3	0	0	0	0.50999	1	3905	3905		52.937	3.4952	1	1181000			48388	11208	40136	40163	51904	51904					0.06894747585647565
RHLVGVLSRA	10	Unmodified	_RHLVGVLSRA_					0	0	0			REV__ENST00000456950.6_1_17:40821512-40828020:-|nuORF	REV__ENST00000456950.6_1_17:40821512-40828020:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.3424072265625	2	554.340907	1106.66726	1.1701	0.00064865	-1.5221	-0.00084378	-0.35199	-0.00019512	554.3399028831741	37.26	1.048	34.368	34.092	35.14	-2.8925					53	20	4	0	0	0	0.69073	1	1365	1365		31.53	0	1	225750	+		48389	26038	40137	40164	51905	51905					0.11819337965334853
RHLVPSSLR	9	Unmodified	_RHLVPSSLR_					0	0	0			REV__ENST00000471767.1_1_5:176893910-176894598:-|nuORF	REV__ENST00000471767.1_1_5:176893910-176894598:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	532.8203735351562	2	532.819807	1063.62506	-0.20162	-0.00010743	2.3735	0.0012647	2.1719	0.0011572	532.8197061797522	41.008	0.70888	41.008	40.711	41.42	0					39	15	3	0	0	0	0.51865	1	2526	2526		40.778	0	1	746700	+		48390	18169	40138	40165	51906	51906					0.09579362556928572
RHLVYSYR	8	Unmodified	_RHLVYSYR_					0	0	0		tr|A0A553SNL5|A0A553SNL5_NIACIDUF1275domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24635PE=4SV=1	tr|A0A553SNL5|A0A553SNL5_NIACIDUF1275domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24635PE=4SV=1	tr|A0A553SNL5|A0A553SNL5_NIACIDUF1275domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24635PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	547.299072265625	2	547.298707	1092.58286	2.5728	0.0014081	-1.0856	-0.00059412	1.4872	0.00081396	547.2979602592812	27.221	0.63178	24.511	24.362	24.994	-2.7097					19	14	2	0	0	0	0.75426	1	443	443		18.324	0	1	13158			48391	33936	40139	40166	51907	51907					0.04027387148539674
RHNKQLQHLLK	11	Unmodified	_RHNKQLQHLLK_					0	0	0		ITPR3|p.V2611Afs*24|1|0.09|ENSG00000096433|chr6:33694969-33694970|-/CC|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3	ITPR3|p.V2611Afs*24|1|0.09|ENSG00000096433|chr6:33694969-33694970|-/CC|frameshift_variant	ITPR3|p.V2611Afs*24|1|0.09|ENSG00000096433|chr6:33694969-33694970|-/CC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.2827453613281	3	472.28451	1413.8317	-5.3969	-0.0025489	4.0171	0.0018972	-1.3798	-0.00065166	472.28668669654706	159.46	3.529	157.88	156.69	160.22	-1.5858					186	88	4	0	0	0	0.72545	1	15681	15681		9.6461	0	1	120390			48392	1948	40140	40167	51908	51908					0.14133730385265153
RHNKTQITTT	10	Unmodified	_RHNKTQITTT_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OvCa9_classI_Rep2	2	600.3226318359375	2	600.328193	1198.64183	-3.9024	-0.0023427	-3.7192	-0.0022328	-7.6217	-0.0045755	600.3257925158986	151.56	1.1868	151.34	150.94	152.13	-0.22696					55	23	3	0	0	0	0.79917	1	15401	15401		19.104	0	1	109540			48393	5793	40141	40168	51909	51909					0.05045818652206435
RHPLVQRID	9	Unmodified	_RHPLVQRID_					0	0	0			REV__ENSG00000134569|ENST00000378623|LRP4	REV__ENSG00000134569|ENST00000378623|LRP4	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3284912109375	2	567.330539	1132.64652	-3.474	-0.0019709	2.1482	0.0012187	-1.3258	-0.00075219	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.63422	1	12017	12017		27.882	1.1893	1	458690	+		48394	19211	40142	40169	51910	51910					0.0855074758567298
RHPQRQRR	8	Unmodified	_RHPQRQRR_					0	0	0		ENST00000338745.10_3_3:18466531-18466693:-|nuORF;ENST00000450898.1_1_3:18465198-18466693:-|nuORF	ENST00000338745.10_3_3:18466531-18466693:-|nuORF	ENST00000338745.10_3_3:18466531-18466693:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	567.32958984375	2	567.329196	1132.64384	-2.3399	-0.0013275	3.3646	0.0019088	1.0247	0.00058136	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.75661	1	14650	14650		19.36	1.995	1	241060			48395	10541	40143	40170	51911	51911					0.08282336971365112
RHQRIHRPKR	10	Unmodified	_RHQRIHRPKR_					0	0	0		ZNF786|p.E729K|1|0.22|ENSG00000197362|chr7:149070587-149070587|C/T|missense_variant	ZNF786|p.E729K|1|0.22|ENSG00000197362|chr7:149070587-149070587|C/T|missense_variant	ZNF786|p.E729K|1|0.22|ENSG00000197362|chr7:149070587-149070587|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	461.9483642578125	3	461.948343	1382.8232	-0.74698	-0.00034506	-0.53978	-0.00024935	-1.2868	-0.00059441	461.9481049115536	20.984	1.0101	19.645	19.26	20.27	-1.3386					48	20	3	0	0	0	0.818	1	109	109		16.717	0.79673	1	118800			48396	36326	40144	40171	51912	51912					0.14710221259292666
RHRHHHHSY	9	Unmodified	_RHRHHHHSY_					0	0	0			REV__ENST00000457665.5_1_22:38746838-38794807:-|nuORF	REV__ENST00000457665.5_1_22:38746838-38794807:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	633.8126831054688	2	633.808628	1265.6027	0.97318	0.00061681	3.7959	0.0024059	4.7691	0.0030227	633.8109645287719	74.096	3.4467	74.096	73.597	77.044	0					211	86	6	0	0	0	0.31747	1	7441	7441		60.972	6.1956	1	43266000	+		48397	26049	40145	40172	51913	51913					-0.019474240681120136
RHRLKEMQKMR	11	Unmodified	_RHRLKEMQKMR_					0	0	0			REV__ENSG00000167522|ENST00000301030|ANKRD11	REV__ENSG00000167522|ENST00000301030|ANKRD11	MULTI-MSMS	OvCa9_classI_Rep2	2	504.95111083984375	3	504.950256	1511.82894	-1.0352	-0.00052273	2.4297	0.0012269	1.3945	0.00070413	504.9515351464522	76.262	2.1432	74.408	74.044	76.187	-1.854					125	40	5	0	0	0	0.72069	1	6306	6306		22.562	0.87584	1	939050	+		48398	21284	40146	40173	51914	51914					0.0934981566440456
RHRPHKRRHCR	11	Unmodified	_RHRPHKRRHCR_					0	0	0			REV__ENST00000265140.9_1_5:93954307-93964559:+|nuORF	REV__ENST00000265140.9_1_5:93954307-93964559:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	513.6217041015625	3	513.623865	1537.84977	1.1592	0.00059538	-3.8921	-0.0019991	-2.733	-0.0014037	513.6218443978763	65.542	1.7967	62.846	62.417	64.213	-2.6958					123	35	5	0	0	0	0.70587	1	5038	5038		27.644	10.477	1	1337600	+		48399	24027	40147	40174	51915	51915					0.1023558687898003
RHRPHKRRHCR	11	Unmodified	_RHRPHKRRHCR_					0	0	0			REV__ENST00000265140.9_1_5:93954307-93964559:+|nuORF	REV__ENST00000265140.9_1_5:93954307-93964559:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		3	513.623865	1537.84977	1.3941	0.00071603	-3.9345	-0.0020209	-2.5405	-0.0013048	513.6218013277372	65.71	0.96569	62.764	62.554	63.519	-2.9459	-0.00099851	-0.00081013	NaN	27.644	34	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31323	+		48400	24027	40147	40174							0.1023558687898003
RHRQVKHYR	9	Unmodified	_RHRQVKHYR_					0	0	0		nc|ENSG00000155926|Q13239-2|SLA;ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA	nc|ENSG00000155926|Q13239-2|SLA	nc|ENSG00000155926|Q13239-2|SLA	MULTI-MSMS	OvCa9_classI_Rep2	2	640.3677368164062	2	640.365779	1278.717	1.1042	0.00070707	3.5855	0.002296	4.6897	0.0030031	640.3679845765907	28.145	0.89946	25.435	25.15	26.049	-2.7097					37	18	3	0	0	0	0.61208	2	570	570;575		30.504	5.9844	1	40465			48401	5810	40148	40175	51916;51917	51916					0.08879465693962629
RHRRKRERTRI	11	Unmodified	_RHRRKRERTRI_					0	0	0			REV__ENST00000343004.9_1_X:133931066-133931180:-|nuORF	REV__ENST00000343004.9_1_X:133931066-133931180:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	521.98388671875	3	521.98909	1562.94544	-4.6275	-0.0024155	-2.7784	-0.0014503	-7.4059	-0.0038658	521.9874825988561	161.37	1.9376	161.15	159.95	161.88	-0.22696					86	38	3	0	0	0	0.72582	1	16453	16453		1.3219	0.95051	1	39687	+		48402	24661	40149	40176	51918	51918					0.18648638270838092
RHRRRRRWWW	10	Unmodified	_RHRRRRRWWW_					0	0	0			REV__ENST00000395136.6_2_1:70687096-70687432:+|nuORF	REV__ENST00000395136.6_2_1:70687096-70687432:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.2769165039062	3	550.978637	1649.91408	1.0275	0.00056615	-2.3467	-0.001293	-1.3191	-0.0007268	551.3115277353162	144.94	0.43982	144.94	144.64	145.08	0					13	8	2	0	0	0	0.02753	1	16930	16930		8.2351	3.6225	1	41004	+		48403	25308	40150	40177	51919	51919					0.11512110027433664
RHRRRRRWWWR	11	Unmodified	_RHRRRRRWWWR_					0	0	0			REV__ENST00000395136.6_2_1:70687096-70687432:+|nuORF	REV__ENST00000395136.6_2_1:70687096-70687432:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	603.0138549804688	3	603.012341	1806.01519	-0.044183	-2.6643E-05	1.9707	0.0011884	1.9265	0.0011617	603.0136327735327	29.91	0.59901	29.91	29.686	30.285	0					34	11	4	0	0	0	0.72582	1	1105	1105		1.523	1.1516	1	673300	+		48404	25308	40151	40178	51920	51920					0.14442561730129455
RHRRRRRWWWR	11	Unmodified	_RHRRRRRWWWR_					0	0	0			REV__ENST00000395136.6_2_1:70687096-70687432:+|nuORF	REV__ENST00000395136.6_2_1:70687096-70687432:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	603.0134887695312	3	603.012341	1806.01519	1.4769	0.00089058	0.69065	0.00041647	2.1675	0.001307	603.012838296433	34.95	1.8528	32.117	31.653	33.505	-2.8329					127	36	6	0	0	0	0.72582	4	1055	1055;1065;1088;1100		3.4087	0.37141	1	448550	+		48405	25308	40151	40178	51921;51922;51923;51924	51921					0.14442561730129455
RHRRRRRWWWR	11	Unmodified	_RHRRRRRWWWR_					0	0	0			REV__ENST00000395136.6_2_1:70687096-70687432:+|nuORF	REV__ENST00000395136.6_2_1:70687096-70687432:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	603.012341	1806.01519	-0.044183	-2.6643E-05	1.9707	0.0011884	1.9265	0.0011617	603.0136327735327	29.91	0.59901	29.91	29.686	30.285	0	0	0	NaN	1.523	34	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	673300	+		48406	25308	40151	40178							0.14442561730129455
RHRRSRAKQ	9	Unmodified	_RHRRSRAKQ_					0	0	0			REV__nc|ENSG00000101773|Q99708-3|RBBP8	REV__nc|ENSG00000101773|Q99708-3|RBBP8	MSMS	OvCa9_classI_Rep4_	4	597.8575439453125	2	597.855578	1193.6966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	150.92	1	149.49	148.99	149.99	-1.4344								0	0	0	0.22147	1	14914	14914		23.042	2.0956	1		+		48407	28773	40152	40179	51925	51925					0.10750295034154078
RHRRWVIS	8	Unmodified	_RHRRWVIS_					0	0	0		ENST00000435560.1_1_3:178819298-178865723:-|nuORF	ENST00000435560.1_1_3:178819298-178865723:-|nuORF	ENST00000435560.1_1_3:178819298-178865723:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	555.324951171875	2	555.325591	1108.63663	-1.5089	-0.00083795	-0.16518	-9.1731E-05	-1.6741	-0.00092968	555.3254164224488	85.229	1.789	83.009	82.448	84.237	-2.2204					96	35	5	0	0	0	0.69415	1	4994	4994		44.531	2.1349	1	1211800			48408	11862	40153	40180	51926	51926					0.08665604370935398
RHRWLRIRNHK	11	Unmodified	_RHRWLRIRNHK_					0	0	0			REV__ENST00000367478.8_1_1:186306158-186307193:-|nuORF	REV__ENST00000367478.8_1_1:186306158-186307193:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.8058471679688	3	524.646664	1570.91816	-1.3029	-0.00068354	-1.3904	-0.00072948	-2.6933	-0.001413	524.6455734349871	93.214	0.19926	90.707	90.614	90.813	-2.5072					5	3	2	0	0	0	0.026554	1	8112	8112		3.026	1.503	1	6013.4	+		48409	24899	40154	40181	51927	51927					0.15554154730466507
RHSCPLGFGH	10	Unmodified	_RHSCPLGFGH_					0	0	0		ENSG00000203737|ENST00000367685|GPR52	ENSG00000203737|ENST00000367685|GPR52	ENSG00000203737|ENST00000367685|GPR52	MULTI-SECPEP	OvCa9_classI_Rep2	2	555.7979125976562	2	555.766717	1109.51888	0.50274	0.0002794	3.9817	0.0022129	4.4844	0.0024923	556.2706060399397	67.189	0.54457	64.528	64.099	64.644	-2.661					13	10	2	0	0	0	0.026688	1	5205	5205		49.442	15.926	1	21731			48410	8930	40155	40182	51928	51928					-0.03149716280017856
RHSLLPGSP	9	Unmodified	_RHSLLPGSP_					0	0	0			REV__ENST00000308018.8_1_19:39423336-39423570:+|nuORF	REV__ENST00000308018.8_1_19:39423336-39423570:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.7325744628906	2	482.272158	962.529764	-0.14718	-7.0982E-05	-1.3414	-0.00064691	-1.4886	-0.00071789	482.2715632340391	35.623	0.37254	35.623	35.52	35.892	0					10	7	2	0	0	0	0.027462	1	1824	1824		27.882	7.4004	1	20509	+		48411	24314	40156	40183	51929	51929					0.04700009365899405
RHSMIRRVKRF	11	Unmodified	_RHSMIRRVKRF_					0	0	0		nc|ENSG00000127325|Q8N1M1-5|BEST3;nc|ENSG00000127325|Q8N1M1-6|BEST3;ENSG00000127325|ENST00000330891|BEST3	nc|ENSG00000127325|Q8N1M1-5|BEST3	nc|ENSG00000127325|Q8N1M1-5|BEST3	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.96002197265625	3	495.961373	1484.86229	-6.4739	-0.0032108	0.93612	0.00046428	-5.5378	-0.0027465	495.96176021125257	160.81	2.4584	159.2	158.19	160.65	-1.6101					153	57	4	0	0	0	0.72573	1	15849	15849		6.001	0	1	42976			48412	3825	40157	40184	51930	51930					0.1392518549862416
RHSVLGAAVSV	11	Unmodified	_RHSVLGAAVSV_					0	0	0		nc|ENSG00000007923|Q9NVH1-3|DNAJC11;DNAJC11|p.A506Vfs*21|1|0.21|ENSG00000007923|chr1:6637205-6637206|-/GA|frameshift_variant;ENSG00000007923|ENST00000377577|DNAJC11;ENST00000472414.1_1_1:6698189-6705162:-|nuORF;nc|ENSG00000007923|Q9NVH1-2|DNAJC11	nc|ENSG00000007923|Q9NVH1-3|DNAJC11	nc|ENSG00000007923|Q9NVH1-3|DNAJC11	MULTI-MSMS	OvCa9_classI_Rep3	3	548.3173828125	2	548.317097	1094.61964	-0.84164	-0.00046149	0.28768	0.00015774	-0.55396	-0.00030375	548.3171569301378	74.411	2.3795	72	71.151	73.531	-2.4106					140	47	5	0	0	0	0.70142	1	3716	3716		29.17	0	1	1829400			48413	753	40158	40185	51931	51931					0.07611638974458401
RHTEKKPFKCI	11	Unmodified	_RHTEKKPFKCI_					0	0	0		nc|ENSG00000184635|P35789-3|ZNF93;nc|ENSG00000184635|P35789-2|ZNF93;ENSG00000184635|ENST00000343769|ZNF93	nc|ENSG00000184635|P35789-3|ZNF93	nc|ENSG00000184635|P35789-3|ZNF93	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.9375915527344	3	462.927335	1385.76017	-1.521	-0.00070409	-2.7835	-0.0012886	-4.3045	-0.0019926	462.925963706498	44.577	0.2518	41.539	41.362	41.613	-3.0385					9	4	3	0	0	0	0.026068	1	2222	2222		34.087	3.0184	1	46267			48414	8178	40159	40186	51932	51932					0.0827247463639651
RHTSKHLSQ	9	Unmodified	_RHTSKHLSQ_					0	0	0			REV__ENST00000478856.5_1_3:100053614-100067682:+|nuORF	REV__ENST00000478856.5_1_3:100053614-100067682:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.8258056640625	2	547.296696	1092.57884	-0.20946	-0.00011464	3.9741	0.002175	3.7646	0.0020604	547.2987963671553	57.246	1.4751	53.901	53.324	54.799	-3.3449					68	28	4	0	0	0	0.027462	1	3767	3767		51.193	16.041	1	179570	+		48415	26425	40160	40187	51933	51933					0.03625297654843962
RHTSKHLSQ	9	Unmodified	_RHTSKHLSQ_					0	0	0			REV__ENST00000478856.5_1_3:100053614-100067682:+|nuORF	REV__ENST00000478856.5_1_3:100053614-100067682:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	547.296696	1092.57884	-0.73872	-0.0004043	4.632	0.0025351	3.8933	0.0021308	547.2990974759193	56.402	1.5858	53.598	53.126	54.712	-2.804	-0.15153	0.00042336	NaN	51.193	61	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63921	+		48416	26425	40160	40187							0.03625297654843962
RHVGEQLQEE	10	Unmodified	_RHVGEQLQEE_					0	0	0			REV__nc|ENSG00000291135|Q92637|FCGR1BP	REV__nc|ENSG00000291135|Q92637|FCGR1BP	MULTI-SECPEP	OvCa99_classI_Rep5	1	613.3355712890625	2	612.802008	1223.58946	2.4289	0.0014884	3.2384	0.0019845	5.6672	0.0034729	612.8033211693564	75.008	0.65677	75.008	74.635	75.292	0					42	15	4	0	0	0	0.026624	1	7472	7472		46.457	11.305	1	1251800	+		48417	20186	40161	40188	51934	51934					-0.013387644813747102
RHVSSARLFGL	11	Unmodified	_RHVSSARLFGL_					0	0	0		ENST00000474861.6_1_1:110950174-110950258:-|nuORF	ENST00000474861.6_1_1:110950174-110950258:-|nuORF	ENST00000474861.6_1_1:110950174-110950258:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	621.8590698242188	2	621.856921	1241.69929	-0.84677	-0.00052657	3.9168	0.0024357	3.07	0.0019091	621.8593176499138	42.394	1.8842	42.394	42.111	43.995	0					117	43	4	0	0	0	0.60035	1	2734	2734		35.152	0	1	5479100			48418	12438	40162	40189	51935	51935					0.08810705648443218
RHWPKKIGSFG	11	Unmodified	_RHWPKKIGSFG_					0	0	0			REV__nc|ENSG00000183621|Q7Z4V0-3|ZNF438	REV__nc|ENSG00000183621|Q7Z4V0-3|ZNF438	MULTI-MSMS	OvCa9_classI_Rep2	2	438.24658203125	3	438.247285	1311.72002	1.181	0.00051758	-2.051	-0.00089884	-0.86996	-0.00038126	438.2463941604818	43.965	2.0387	41.255	40.758	42.797	-2.7097					118	40	4	0	0	0	0.69735	1	2488	2488		30.569	2.9249	1	1317400	+		48419	22370	40163	40190	51936	51936					0.07663296028113109
RIAALRAAGL	10	Unmodified	_RIAALRAAGL_					0	0	0		nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	MULTI-MSMS	OvCa99_classI_Rep5	1	506.32452392578125	2	506.324725	1010.6349	0.12809	6.4854E-05	0.27401	0.00013874	0.4021	0.00020359	506.3247139408412	64.702	0.37202	64.702	64.503	64.875	0					21	8	3	0	0	0	0.6104	1	5906	5906		40.778	0	1	726640			48420	3115	40164	40191	51937	51937					0.13000550562321678
RIAGVDYRTLD	11	Unmodified	_RIAGVDYRTLD_					0	0	0			REV__ENSG00000153201|ENST00000283195|RANBP2	REV__ENSG00000153201|ENST00000283195|RANBP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	639.8363647460938	2	639.843676	1277.6728	2.015	0.0012893	-3.526	-0.0022561	-1.5109	-0.00096677	639.8414128062851	93.696	0.37358	93.696	93.59	93.964	0					24	8	4	0	0	0	0.025521	1	10169	10169		54.776	14.718	1	1245400	+		48421	20326	40165	40192	51938	51938					0.04506971966452511
RIAHLDLKP	9	Unmodified	_RIAHLDLKP_					0	0	0		nc|ENSG00000038382|O75962-2|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-4|TRIO;nc|ENSG00000038382|O75962-3|TRIO	nc|ENSG00000038382|O75962-2|TRIO	nc|ENSG00000038382|O75962-2|TRIO	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.80810546875	2	531.824558	1061.63456	-0.4805	-0.00025554	-0.48399	-0.0002574	-0.96449	-0.00051294	531.824004086807	77.813	0.70428	75.46	74.942	75.647	-2.3527					20	13	2	0	0	0	0.027164	1	4037	4037		90.777	0	1	17140			48422	1098	40166	40193	51939	51939					0.10621130842446291
RIAIIEHW	8	Unmodified	_RIAIIEHW_					0	0	0			REV__ENSG00000042781|ENST00000307340|USH2A	REV__ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.3222045898438	2	519.298176	1036.5818	-2.4399	-0.001267	2.4554	0.0012751	0.015538	8.069E-06	519.2991420177137	108.02	1.6951	106.14	105.38	107.08	-1.8785					42	33	2	0	0	0	0.028476	1	9794	9794		33.516	17.042	1	91148	+		48423	16642	40167	40194	51940	51940					0.06497172779654647
RIAIIEHW	8	Unmodified	_RIAIIEHW_					0	0	0			REV__ENSG00000042781|ENST00000307340|USH2A	REV__ENSG00000042781|ENST00000307340|USH2A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	519.298176	1036.5818	0.56642	0.00029414	-1.6162	-0.00083929	-1.0498	-0.00054515	519.2974592712337	107.47	1.3814	106.2	105.71	107.1	-1.267	0.029267	-0.00052696	NaN	33.516	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70150	+		48424	16642	40167	40194							0.06497172779654647
RIAKKGKSNTY	11	Unmodified	_RIAKKGKSNTY_					0	0	0			REV__ENSG00000158023|ENST00000288912|CFAP251	REV__ENSG00000158023|ENST00000288912|CFAP251	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3692016601562	2	633.369861	1264.72517	-4.5141	-0.0028591	3.4388	0.002178	-1.0753	-0.00068108	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.71498	1	15570	15570		24.519	4.5224	1	369460	+		48425	20545	40168	40195	51941	51941					0.10339555100085818
RIAKKGKSNTY	11	Unmodified	_RIAKKGKSNTY_					0	0	0			REV__ENSG00000158023|ENST00000288912|CFAP251	REV__ENSG00000158023|ENST00000288912|CFAP251	MULTI-MSMS	OvCa9_classI_Rep3	3	633.369384765625	2	633.369861	1264.72517	-4.8824	-0.0030923	3.9881	0.002526	-0.89421	-0.00056637	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.71498	1	13062	13062		24.519	0	1	765700	+		48426	20545	40168	40195	51942	51942					0.10339555100085818
RIANLNPKQ	9	Unmodified	_RIANLNPKQ_					0	0	0			REV__nc|ENSG00000061273|Q8WUI4-3|HDAC7;REV__ENST00000459625.5_1_12:48179068-48183703:-|nuORF	REV__nc|ENSG00000061273|Q8WUI4-3|HDAC7	MULTI-MSMS	OvCa9_classI_Rep2	2	527.3116455078125	2	527.311815	1052.60908	-1.7213	-0.00090768	1.5988	0.00084305	-0.12258	-6.4636E-05	527.3124779288797	34.111	0.84072	31.401	31.168	32.009	-2.7097					39	16	4	0	0	0	0.6653	1	1279	1279		24.203	2.2429	1	96446	+		48427	16743;26062	40169	40196	51943	51943					0.08487656320039605
RIAPAVVK	8	Unmodified	_RIAPAVVK_					0	0	0			REV__nc|ENSG00000135749|A6NKB5-4|PCNX2	REV__nc|ENSG00000135749|A6NKB5-4|PCNX2	MULTI-SECPEP	OvCa99_classI_Rep5	1	427.2529602050781	2	427.284537	852.554522	-0.26598	-0.00011365	-3.9943	-0.0017067	-4.2603	-0.0018204	427.28461799009636	55.158	0.96337	55.158	54.718	55.682	0					53	22	4	0	0	0	0.028476	1	4459	4459		25.45	0	1	688320	+		48428	19318	40170	40197	51944	51944					0.12234689239278396
RIAQLRFLL	9	Unmodified	_RIAQLRFLL_					0	0	0		ENSG00000163636|ENST00000295901|PSMD6;nc|ENSG00000163636|Q15008-4|PSMD6;ENST00000475036.1_1_3:64008918-64009122:-|nuORF	ENSG00000163636|ENST00000295901|PSMD6	ENSG00000163636|ENST00000295901|PSMD6	MULTI-MSMS	OvCa99_classI_Rep5	1	565.3648681640625	2	565.36385	1128.71315	0.98987	0.00055964	0.38953	0.00022023	1.3794	0.00077987	565.3639479670552	105.59	1.0054	105.59	105.31	106.32	0					49	22	3	0	0	0	0.31747	1	11869	11869		60.972	13.315	1	1584500			48429	6338	40171	40198	51945	51945					0.15393983147555446
RIARREPYD	9	Unmodified	_RIARREPYD_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-MSMS	OvCa9_classI_Rep2	2	588.3175659179688	2	588.317628	1174.6207	-0.86515	-0.00050898	0.29962	0.00017627	-0.56553	-0.00033271	588.3178156551718	47.322	1.787	44.612	44.142	45.929	-2.7097					114	35	4	0	0	0	0.56889	1	2902	2902		35.618	1.4457	1	1251100	+		48430	23052	40172	40199	51946	51946					0.04037853343379538
RIARVCFPH	9	Unmodified	_RIARVCFPH_					0	0	0		ENST00000269445.10_1_18:46570279-46570333:-|nuORF	ENST00000269445.10_1_18:46570279-46570333:-|nuORF	ENST00000269445.10_1_18:46570279-46570333:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	549.8050537109375	2	549.803103	1097.59165	-0.45115	-0.00024805	2.3546	0.0012946	1.9035	0.0010465	549.8043284465041	43.242	1.0261	43.242	42.926	43.952	0					67	23	4	0	0	0	0.29717	1	2833	2833		63.306	13.865	1	2697200			48431	9985	40173	40200	51947	51947					0.04676037513377196
RIASTLLLY	9	Unmodified	_RIASTLLLY_					0	0	0		ENSG00000183735|ENST00000331710|TBK1;TBK1|p.E437Nfs*2|1|0.06|ENSG00000183735|chr12:64485985-64485985|G/-|frameshift_variant	ENSG00000183735|ENST00000331710|TBK1	ENSG00000183735|ENST00000331710|TBK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.3212280273438	2	525.321317	1048.62808	0.25774	0.0001354	-0.64775	-0.00034028	-0.39	-0.00020488	525.3208010505311	110.43	1.6313	108.83	108.44	110.07	-1.6011					74	30	6	0	0	0	0.50149	1	10146	10146		42.396	1.8235	1	357930			48432	8098	40174	40201	51948	51948					0.10571192891120518
RIAVLFCFL	9	Unmodified	_RIAVLFCFL_					0	0	0			REV__nc|ENSG00000160055|Q8WY98-2|TMEM234	REV__nc|ENSG00000160055|Q8WY98-2|TMEM234	MULTI-MSMS	OvCa9_classI_Rep2	2	541.3156127929688	2	541.31498	1080.61541	-0.38892	-0.00021053	0.25597	0.00013856	-0.13295	-7.1969E-05	541.3149781627068	133.47	0.93706	133.24	132.92	133.85	-0.22696					37	17	3	0	0	0	0.52083	1	13212	13212		40.573	1.3198	1	101750	+		48433	28957	40175	40202	51949	51949					0.07832458227198913
RICPLVTL	8	Carbamidomethyl (C)	_RIC(Carbamidomethyl (C))PLVTL_	RIC(1)PLVTL		RIC(89)PLVTL		0	1	0			REV__ENST00000471373.5_1_3:170139112-170178121:+|nuORF	REV__ENST00000471373.5_1_3:170139112-170178121:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	486.288818359375	2	486.288963	970.563372	-0.051282	-2.4938E-05	0.13101	6.3706E-05	0.079724	3.8769E-05	486.28890972170547	95.271	2.7144	94.243	93.482	96.196	-1.0281					110	54	3	0	0	0	0.39692	3	8553	8553;8585;8604		88.643	20.158	1	2640800	+		48434	16504	40176	40203	51950;51951;51952	51950	187				0.07691294813457716
RICPLVTL	8	Carbamidomethyl (C)	_RIC(Carbamidomethyl (C))PLVTL_	RIC(1)PLVTL		RIC(77)PLVTL		0	1	0			REV__ENST00000471373.5_1_3:170139112-170178121:+|nuORF	REV__ENST00000471373.5_1_3:170139112-170178121:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	486.28948974609375	2	486.288963	970.563372	-1.3386	-0.00065093	1.302	0.00063316	-0.036553	-1.7776E-05	486.28968430992785	96.173	2.6618	94.345	93.531	96.193	-1.8286					91	52	2	0	0	0	0.50674	1	6310	6310		76.847	13.54	1	3287800	+		48435	16504	40176	40203	51953	51953	187				0.07691294813457716
RICPLVTL	8	Carbamidomethyl (C)	_RIC(Carbamidomethyl (C))PLVTL_	RIC(1)PLVTL		RIC(89)PLVTL		0	1	0			REV__ENST00000471373.5_1_3:170139112-170178121:+|nuORF	REV__ENST00000471373.5_1_3:170139112-170178121:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.2900695800781	2	486.288963	970.563372	1.0523	0.00051172	-0.39232	-0.00019078	0.65997	0.00032094	486.2884483834136	96.773	2.621	94.348	93.609	96.23	-2.4256					142	51	5	0	0	0	0.39692	1	8546	8546		88.643	11.869	1	3468200	+		48436	16504	40176	40203	51954	51954	187				0.07691294813457716
RICSQLKVTA	10	Unmodified	_RICSQLKVTA_					0	0	0			REV__ENSG00000229972|ENST00000440739|IQCF3	REV__ENSG00000229972|ENST00000440739|IQCF3	MULTI-SECPEP	OvCa9_classI_Rep2	2	560.8043212890625	2	559.821158	1117.62776	1.2563	0.00070329	-1.6358	-0.00091578	-0.37957	-0.00021249	559.8202437669197	91.965	1.776	90.73	90.061	91.837	-1.2355					49	33	2	0	0	0	0.027033	1	8141	8141		33.922	1.1711	1	22305	+		48437	23379	40177	40204	51955	51955					0.07365449899589294
RIDGKTYVI	9	Unmodified	_RIDGKTYVI_					0	0	0		EIF2AK2|p.F368Pfs*12|1|0.04|ENSG00000055332|chr2:37120106-37120107|-/CACAGGGAATAGGGAATGGAGGAAAGGC|frameshift_variant;ENSG00000055332|ENST00000233057|EIF2AK2	EIF2AK2|p.F368Pfs*12|1|0.04|ENSG00000055332|chr2:37120106-37120107|-/CACAGGGAATAGGGAATGGAGGAAAGGC|frameshift_variant	EIF2AK2|p.F368Pfs*12|1|0.04|ENSG00000055332|chr2:37120106-37120107|-/CACAGGGAATAGGGAATGGAGGAAAGGC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	532.8104248046875	2	532.808574	1063.60259	0.16464	8.7723E-05	-1.0632	-0.0005665	-0.89858	-0.00047877	532.8083366744038	62.757	1.2715	62.757	62.418	63.69	0					63	31	4	0	0	0	0.38969	1	5598	5598		52.937	5.2794	1	6054700			48438	787	40178	40205	51956	51956					0.07333718368658992
RIDKNVSN	8	Unmodified	_RIDKNVSN_					0	0	0			REV__ENST00000527206.1_1_11:118992311-118998053:+|nuORF	REV__ENST00000527206.1_1_11:118992311-118998053:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.2729187011719	2	473.259248	944.503943	1.449	0.00068576	2.2257	0.0010533	3.6747	0.0017391	473.26010588186585	67.254	0.44581	63.764	63.442	63.888	-3.4902					13	8	2	0	0	0	0.028476	1	4901	4901		26.693	3.6504	1	111450	+		48439	27149	40179	40206	51957	51957					0.02947115123618005
RIDRPSIH	8	Unmodified	_RIDRPSIH_					0	0	0		nc|ENSG00000142330|Q9HC96-8|CAPN10;nc|ENSG00000142330|Q9HC96-3|CAPN10;ENSG00000142330|ENST00000391984|CAPN10	nc|ENSG00000142330|Q9HC96-8|CAPN10	nc|ENSG00000142330|Q9HC96-8|CAPN10	MULTI-MSMS	OvCa99_classI_Rep5	1	497.2846374511719	2	497.283057	992.551562	0.22343	0.00011111	-0.0062517	-3.1089E-06	0.21718	0.000108	497.2829245992996	67.292	1.3356	67.292	66.816	68.152	0					79	33	4	0	0	0	0.60331	1	6293	6293		63.306	4.5243	1	7654800			48440	4967	40180	40207	51958	51958					0.05498814114469042
RIDTLMYLL	9	Unmodified	_RIDTLMYLL_					0	0	0		ENSG00000013503|ENST00000228347|POLR3B;nc|ENSG00000013503|Q9NW08-2|POLR3B	ENSG00000013503|ENST00000228347|POLR3B	ENSG00000013503|ENST00000228347|POLR3B	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.8258666992188	2	569.32046	1136.62637	0.56915	0.00032403	-1.9105	-0.0010877	-1.3413	-0.00076365	569.3188551908468	74.279	0.38462	74.279	74.02	74.405	0					17	9	3	0	0	0	0.027462	1	7304	7304		26.796	0	1	558310			48441	987	40181	40208	51959	51959					0.06351815810830885
RIELDDSI	8	Unmodified	_RIELDDSI_					0	0	0		nc|ENSG00000163785|P34925-2|RYK;ENSG00000163785|ENST00000623711|RYK;RYK|p.R305Lfs*9|1|0.12|ENSG00000163785|chr3:134191929-134191959|GTGACACTTCTCAAGTCGTTCTTCTCTATCC/-|frameshift_variant	nc|ENSG00000163785|P34925-2|RYK	nc|ENSG00000163785|P34925-2|RYK	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.78424072265625	2	480.753464	959.492375	-0.82289	-0.00039561	3.1557	0.0015171	2.3328	0.0011215	480.7550413083289	48.635	0.15366	45.528	45.399	45.553	-3.1077					4	2	2	0	0	0	0.028476	1	2690	2690		57.811	1.0902	1	23048			48442	6359	40182	40209	51960	51960					0.011008733096218748
RIENLTAPPDL	11	Unmodified	_RIENLTAPPDL_					0	0	0		tr|A0A7D6ZX34|A0A7D6ZX34_9CLOTATP-dependentClpproteaseATP-bindingsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_21475PE=3SV=1	tr|A0A7D6ZX34|A0A7D6ZX34_9CLOTATP-dependentClpproteaseATP-bindingsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_21475PE=3SV=1	tr|A0A7D6ZX34|A0A7D6ZX34_9CLOTATP-dependentClpproteaseATP-bindingsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_21475PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	413.2414855957031	3	413.562827	1237.66665	0.72241	0.00029876	-2.5552	-0.0010567	-1.8328	-0.00075798	413.5618068828776	64.868	0.24411	61.382	61.163	61.407	-3.4854					6	4	2	0	0	0	0.025338	1	4640	4640		33.039	0	1	10178			48443	35864	40183	40210	51961	51961					0.057324537349586535
RIESQLEKR	9	Unmodified	_RIESQLEKR_					0	0	0			REV__nc|ENSG00000132321|Q86XH1-2|IQCA1	REV__nc|ENSG00000132321|Q86XH1-2|IQCA1	MULTI-MSMS	OvCa99_classI_Rep5	1	579.8324584960938	2	579.833111	1157.65167	-1.2469	-0.00072302	0.31309	0.00018154	-0.93385	-0.00054148	579.8333083329898	36.51	1.6391	36.51	36.257	37.896	0					85	35	5	0	0	0	0.10502	1	1942	1942		95.815	5.2143	1	7957100	+		48444	19066	40184	40211	51962	51962					0.07915006657594859
RIFAPNHVV	9	Unmodified	_RIFAPNHVV_					0	0	0		ENSG00000105640|ENST00000222247|RPL18A;ENST00000600238.1_1_19:17972170-17973061:+|nuORF;ENST00000602216.1_1_19:17970765-17972392:+|nuORF;chr19:17861396-17863219|308|15.45|0.02|9.66|+|1|None,RPL18A|1	ENSG00000105640|ENST00000222247|RPL18A	ENSG00000105640|ENST00000222247|RPL18A	MULTI-MSMS	OvCa99_classI_Rep5	1	526.8050537109375	2	526.803626	1051.5927	-1.2143	-0.00063968	0.89955	0.00047389	-0.31471	-0.00016579	526.8039009208413	63.842	0.56322	63.842	63.607	64.17	0					39	13	4	0	0	0	0.48324	1	5767	5767		44.117	16.235	1	2400600			48445	2477	40185	40212	51963	51963					0.06896575153928097
RIFAPNHVV	9	Unmodified	_RIFAPNHVV_					0	0	0		ENSG00000105640|ENST00000222247|RPL18A;ENST00000600238.1_1_19:17972170-17973061:+|nuORF;ENST00000602216.1_1_19:17970765-17972392:+|nuORF;chr19:17861396-17863219|308|15.45|0.02|9.66|+|1|None,RPL18A|1	ENSG00000105640|ENST00000222247|RPL18A	ENSG00000105640|ENST00000222247|RPL18A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	526.803626	1051.5927	0.56333	0.00029676	8.0234	0.0042268	8.5868	0.0045235	526.8076344918285	66.237	0.74483	63.542	63.17	63.915	-2.6958	-0.15024	0.0050702	NaN	44.117	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28783			48446	2477	40185	40212							0.06896575153928097
RIFAPNHVVAK	11	Unmodified	_RIFAPNHVVAK_					0	0	0		ENSG00000105640|ENST00000222247|RPL18A;ENST00000600238.1_1_19:17972170-17973061:+|nuORF;ENST00000602216.1_1_19:17970765-17972392:+|nuORF	ENSG00000105640|ENST00000222247|RPL18A	ENSG00000105640|ENST00000222247|RPL18A	MULTI-MSMS	OvCa9_classI_Rep2	2	417.9158020019531	3	417.915535	1250.72478	-0.66684	-0.00027868	0.55957	0.00023385	-0.10726	-4.4828E-05	417.91572616845747	53.813	1.9432	50.999	50.529	52.472	-2.8139					115	38	5	0	0	0	0.050464	10	3682	3646;3652;3658;3664;3670;3675;3682;3688;3695;3703		131.12	83.156	1	979830			48447	2477	40186	40213	51964;51965;51966;51967;51968;51969;51970;51971;51972;51973	51970					0.10944180170872642
RIFAPNHVVAK	11	Unmodified	_RIFAPNHVVAK_					0	0	0		ENSG00000105640|ENST00000222247|RPL18A;ENST00000600238.1_1_19:17972170-17973061:+|nuORF;ENST00000602216.1_1_19:17970765-17972392:+|nuORF	ENSG00000105640|ENST00000222247|RPL18A	ENSG00000105640|ENST00000222247|RPL18A	MULTI-MSMS	OvCa9_classI_Rep4_	4	417.9170837402344	3	417.915535	1250.72478	-1.1692	-0.00048862	0.9999	0.00041787	-0.16929	-7.0751E-05	417.9158855759141	54.202	2.5021	50.955	50.415	52.917	-3.2474					114	48	5	0	0	0	0.10598	4	3351	3341;3351;3363;3376		112.3	66.323	1	1127800			48448	2477	40186	40213	51974;51975;51976;51977	51975					0.10944180170872642
RIFCIQFWYLD	11	Unmodified	_RIFCIQFWYLD_					0	0	0			REV__L1PA3_dup1152|chr2:117623254-117629278:+|1.1606400945596698|0.0841542146032081|3.79|394.0|279|2|anti-sense	REV__L1PA3_dup1152|chr2:117623254-117629278:+|1.1606400945596698|0.0841542146032081|3.79|394.0|279|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.7821350097656	3	501.919957	1502.73804	-1.061	-0.00053254	-4.3643	-0.0021905	-5.4253	-0.0027231	501.9175474111275	69.431	0.78127	65.95	65.468	66.249	-3.4812					33	15	3	0	0	0	0.025864	1	5167	5167		12.433	0	1	62050	+		48449	28486	40187	40214	51978	51978					0.006782501679481356
RIFHFVLYC	9	Unmodified	_RIFHFVLYC_					0	0	0			REV__tr|A0A553SUJ5|A0A553SUJ5_NIACIExcaliburcalcium-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07050PE=4SV=1	REV__tr|A0A553SUJ5|A0A553SUJ5_NIACIExcaliburcalcium-bindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07050PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	599.3142700195312	2	599.315512	1196.61647	0.005311	3.183E-06	-2.0557	-0.001232	-2.0504	-0.0012288	599.3143342815689	22.815	0.24041	22.815	22.7	22.94	0					8	5	2	0	0	0	0.6959	1	258	258		19.36	3.7182	1	27873	+		48450	31086	40188	40215	51979	51979					0.026026725961173724
RIFQNTHAI	9	Unmodified	_RIFQNTHAI_					0	0	0		ENSG00000111886|ENST00000402938|GABRR2;nc|ENSG00000111886|P28476-2|GABRR2	ENSG00000111886|ENST00000402938|GABRR2	ENSG00000111886|ENST00000402938|GABRR2	MULTI-SECPEP	OvCa9_classI_Rep2	2	549.30517578125	2	550.30399	1098.59343	-0.90398	-0.00049746	-3.1573	-0.0017375	-4.0612	-0.0022349	550.3018459295758	118.17	0.49613	118.03	117.79	118.28	-0.14754					15	9	2	0	0	0	0.027462	1	11316	11316		42.396	0	1	17501			48451	2863	40189	40216	51980	51980					0.04807369802983885
RIFRLPNN	8	Unmodified	_RIFRLPNN_					0	0	0		nc|ENSG00000155926|Q13239-2|SLA;ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA	nc|ENSG00000155926|Q13239-2|SLA	nc|ENSG00000155926|Q13239-2|SLA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.3095092773438	2	515.30125	1028.58795	-0.9585	-0.00049392	-3.2646	-0.0016822	-4.2231	-0.0021761	515.299188043807	101.16	0.18208	98.891	98.792	98.974	-2.2665					5	3	2	0	0	0	0.028476	1	9066	9066		31.955	0	1	46758			48452	5810	40190	40217	51981	51981					0.07479691011167233
RIFTPILML	9	Unmodified	_RIFTPILML_					0	0	0		tr|A0A553SK05|A0A553SK05_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_17865PE=4SV=1	tr|A0A553SK05|A0A553SK05_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_17865PE=4SV=1	tr|A0A553SK05|A0A553SK05_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_17865PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	552.3397216796875	2	552.335913	1102.65727	3.5532	0.0019626	1.3813	0.00076294	4.9346	0.0027255	552.3370650907057	88.215	1.1308	88.215	87.712	88.843	0					60	26	4	0	0	0	0.48324	1	9360	9360		44.117	12.587	1	3201200			48453	33563	40191	40218	51982	51982					0.11005013915723794
RIGGRPEL	8	Unmodified	_RIGGRPEL_					0	0	0		ENST00000474114.5_1_21:45744937-45745285:+|nuORF	ENST00000474114.5_1_21:45744937-45745285:+|nuORF	ENST00000474114.5_1_21:45744937-45745285:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	449.2691955566406	2	449.266876	896.519199	3.2258	0.0014492	1.1164	0.00050155	4.3422	0.0019508	449.26732371902864	112.43	2.5171	112.3	111.93	114.45	-0.12174					121	50	4	0	0	0	0.72896	1	10647	10647		37.159	0	1	1472600			48454	12425	40192	40219	51983	51983					0.06680026711467235
RIGIHGLPLM	10	Unmodified	_RIGIHGLPLM_					0	0	0			REV__tr|A0A553SFE0|A0A553SFE0_NIACIAlpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_08580PE=3SV=1	REV__tr|A0A553SFE0|A0A553SFE0_NIACIAlpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_08580PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	553.829833984375	2	553.828786	1105.64302	-0.8401	-0.00046527	2.9703	0.001645	2.1302	0.0011798	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.75594	1	14283	14283		24.203	0	1	245610	+		48455	29567	40193	40220	51984	51984					0.09442361487435846
RIGKVGNQK	9	Unmodified	_RIGKVGNQK_					0	0	0		ENST00000566015.1_1_16:74330767-74334139:+|nuORF;ENSG00000103035|ENST00000219313|PSMD7	ENST00000566015.1_1_16:74330767-74334139:+|nuORF	ENST00000566015.1_1_16:74330767-74334139:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	500.3061828613281	2	500.306532	998.598512	1.8295	0.00091529	-2.0216	-0.0010114	-0.1921	-9.611E-05	500.3053685545666	27.721	1.1711	25.012	24.828	25.999	-2.7097					57	25	3	0	0	0	0.27546	2	519	519;524		65.803	7.3792	1	318060			48456	2274	40194	40221	51985;51986	51985					0.09915673665614122
RIGLHHLPF	9	Unmodified	_RIGLHHLPF_					0	0	0			REV__nc|ENSG00000123243|Q86UX2-2|ITIH5	REV__nc|ENSG00000123243|Q86UX2-2|ITIH5	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3157348632812	2	545.319443	1088.62433	-1.7047	-0.0009296	-3.6121	-0.0019697	-5.3168	-0.0028993	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.64339	1	14313	14313		26.796	3.7536	1	202430	+		48457	28825	40195	40222	51987	51987					0.08356567907890167
RIGQRKHLVL	10	Unmodified	_RIGQRKHLVL_					0	0	0		nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	MULTI-MSMS	OvCa9_classI_Rep3	3	407.26312255859375	3	407.263046	1218.76731	1.8047	0.00073498	-1.5999	-0.00065158	0.20477	8.3394E-05	407.26226398347274	67.562	1.5001	64.675	64.341	65.841	-2.8873					59	29	3	0	0	0	0.77039	1	2864	2864		22.58	1.7425	1	125720			48458	5408	40196	40223	51988	51988					0.16667575299129567
RIGSGLFLSL	10	Unmodified	_RIGSGLFLSL_					0	0	0			REV__tr|A0A553SSQ5|A0A553SSQ5_NIACITyrosinerecombinaseXerSOS=NialliacirculansOX=1397GN=xerSPE=4SV=1	REV__tr|A0A553SSQ5|A0A553SSQ5_NIACITyrosinerecombinaseXerSOS=NialliacirculansOX=1397GN=xerSPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	531.817138671875	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.79213	1	14028	14028		19.997	0.89325	1	166960	+		48459	30864	40197	40224	51989	51989					0.09498308748334239
RIHKKLVSP	9	Unmodified	_RIHKKLVSP_					0	0	0			REV__ENSG00000010818|ENST00000367603|HIVEP2	REV__ENSG00000010818|ENST00000367603|HIVEP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.83349609375	2	539.3482	1076.68185	-1.0005	-0.00053963	1.3959	0.00075287	0.39536	0.00021324	539.8497107259577	27.666	0.35026	27.666	27.491	27.841	0					12	6	3	0	0	0	0.027462	1	832	832		30.504	8.5438	1	43366	+		48460	16482	40198	40225	51990	51990					0.14657410113454716
RIHLGLKEF	9	Unmodified	_RIHLGLKEF_					0	0	0		ZBTB38|p.Y1070Wfs*9|1|0.19|ENSG00000177311|chr3:141445596-141445597|-/GG|frameshift_variant;ENSG00000177311|ENST00000321464|ZBTB38	ZBTB38|p.Y1070Wfs*9|1|0.19|ENSG00000177311|chr3:141445596-141445597|-/GG|frameshift_variant	ZBTB38|p.Y1070Wfs*9|1|0.19|ENSG00000177311|chr3:141445596-141445597|-/GG|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	556.8331298828125	2	556.832383	1111.65021	2.1988	0.0012244	-0.28194	-0.00015699	1.9169	0.0010674	556.8321837859951	81.929	1.3843	81.929	81.694	83.078	0					101	32	5	0	0	0	0.51865	1	8448	8448		40.778	3.6191	1	13415000			48461	7671	40199	40226	51991	51991					0.09885417359510029
RIHRKITSLK	10	Unmodified	_RIHRKITSLK_					0	0	0			REV__ENSG00000188070|ENST00000433688|ZFTA	REV__ENSG00000188070|ENST00000433688|ZFTA	MSMS	OvCa9_classI_Rep2	2	626.3938598632812	2	626.404038	1250.79352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	163.14	1	162.91	162.41	163.41	-0.22696								0	0	0	0.14592	1	16620	16620		16.473	0	1		+		48462	22689	40200	40227	51992	51992					0.17815844470578668
RIHRQPSFSF	10	Unmodified	_RIHRQPSFSF_					0	0	0		chr21:39178568-39179924|91|10.88|0.24|5.5|-|1|None,PSMG1|1	chr21:39178568-39179924|91|10.88|0.24|5.5|-|1|None,PSMG1|1	chr21:39178568-39179924|91|10.88|0.24|5.5|-|1|None,PSMG1|1	MULTI-MSMS	OvCa9_classI_Rep2	2	425.56317138671875	3	425.563273	1273.66799	-0.49907	-0.00021239	0.24547	0.00010446	-0.2536	-0.00010792	425.5633997861795	69.334	3.5142	66.713	66.068	69.582	-2.6203					206	68	5	0	0	0	0.58067	3	5513	5501;5513;5539		44.377	1.1477	1	1667000			48463	461	40201	40228	51993;51994;51995	51994					0.0421013261434382
RIHRQPSFSF	10	Unmodified	_RIHRQPSFSF_					0	0	0		chr21:39178568-39179924|91|10.88|0.24|5.5|-|1|None,PSMG1|1	chr21:39178568-39179924|91|10.88|0.24|5.5|-|1|None,PSMG1|1	chr21:39178568-39179924|91|10.88|0.24|5.5|-|1|None,PSMG1|1	MULTI-MSMS	OvCa9_classI_Rep3	3	425.56341552734375	3	425.563273	1273.66799	1.0852	0.00046181	-1.3177	-0.00056076	-0.23251	-9.8946E-05	425.56271987767565	69.963	3.6895	67.243	66.706	70.396	-2.7196					254	73	5	0	0	0	0.55109	4	3180	3180;3186;3204;3253		47.96	6.1772	1	1255000			48464	461	40201	40228	51996;51997;51998;51999	51996					0.0421013261434382
RIHRQPSFSF	10	Unmodified	_RIHRQPSFSF_					0	0	0		chr21:39178568-39179924|91|10.88|0.24|5.5|-|1|None,PSMG1|1	chr21:39178568-39179924|91|10.88|0.24|5.5|-|1|None,PSMG1|1	chr21:39178568-39179924|91|10.88|0.24|5.5|-|1|None,PSMG1|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	425.5638427734375	3	425.563273	1273.66799	-0.64889	-0.00027614	0.36902	0.00015704	-0.27988	-0.0001191	425.5634355212521	71.059	2.9087	67.603	67.251	70.16	-3.4563					178	59	6	0	0	0	0.53807	2	5437	5390;5437		49.536	6.1175	1	1431800			48465	461	40201	40228	52000;52001	52001					0.0421013261434382
RIIAFISW	8	Unmodified	_RIIAFISW_					0	0	0		ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	ENSG00000113615|ENST00000398844|SEC24A	MULTI-MSMS	OvCa99_classI_Rep5	1	503.29730224609375	2	503.297645	1004.58074	0.17477	8.7961E-05	-4.4621	-0.0022458	-4.2873	-0.0021578	503.2952115015177	57.723	0.97269	57.723	57.221	58.194	0					46	22	3	0	0	0	0.73626	1	4879	4879		33.516	3.1979	1	995920			48466	2982	40202	40229	52002	52002					0.0786295841073752
RIIAPVQVV	9	Unmodified	_RIIAPVQVV_					0	0	0		tr|A0A553SIF1|A0A553SIF1_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_14740PE=4SV=1	tr|A0A553SIF1|A0A553SIF1_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_14740PE=4SV=1	tr|A0A553SIF1|A0A553SIF1_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_14740PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.7887268066406	2	497.824027	993.633501	0.28408	0.00014142	-0.72328	-0.00036007	-0.4392	-0.00021865	497.82352860166736	119.23	0.79291	118.2	118.08	118.87	-1.0271					23	15	2	0	0	0	0.027462	1	9019	9019		17.365	0	1	22431			48467	33376	40203	40230	52003	52003					0.13642916473565947
RIIAPVQVV	9	Unmodified	_RIIAPVQVV_					0	0	0		tr|A0A553SIF1|A0A553SIF1_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_14740PE=4SV=1	tr|A0A553SIF1|A0A553SIF1_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_14740PE=4SV=1	tr|A0A553SIF1|A0A553SIF1_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_14740PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	497.824027	993.633501	-1.4414	-0.00071757	1.3773	0.00068566	-0.064113	-3.1917E-05	497.82446405053935	118.19	0.39676	118.04	117.84	118.23	-0.14755	-0.13017	0.00036193	NaN	11.511	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10764			48468	33376	40203	40230							0.13642916473565947
RIIDRSIRP	9	Unmodified	_RIIDRSIRP_					0	0	0		ENSG00000138035|ENST00000447944|PNPT1	ENSG00000138035|ENST00000447944|PNPT1	ENSG00000138035|ENST00000447944|PNPT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.3485107421875	2	563.346189	1124.67783	1.893	0.0010664	1.3197	0.00074344	3.2127	0.0018098	563.3468115501491	89.862	1.6698	87.287	86.851	88.52	-2.575					88	32	3	0	0	0	0.46356	1	7731	7731		45.972	3.5761	1	492310			48469	4649	40204	40231	52004	52004					0.12047320619740276
RIIDVITQI	9	Unmodified	_RIIDVITQI_					0	0	0		nc|ENSG00000168398|P30411-2|BDKRB2;ENSG00000168398|ENST00000554311|BDKRB2	nc|ENSG00000168398|P30411-2|BDKRB2	nc|ENSG00000168398|P30411-2|BDKRB2	MULTI-MSMS	OvCa99_classI_Rep5	1	535.833984375	2	535.832049	1069.64954	1.484	0.00079517	0.5597	0.0002999	2.0437	0.0010951	535.8321972688963	118.99	0.70491	118.99	118.72	119.43	0					39	14	4	0	0	0	0.060996	2	13664	13639;13664		112.41	35.093	1	702670			48470	6903	40205	40232	52005;52006	52006					0.11750577919792704
RIIELHRVL	9	Unmodified	_RIIELHRVL_					0	0	0			REV__ENSG00000180104|ENST00000512944|EXOC3	REV__ENSG00000180104|ENST00000512944|EXOC3	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.8263549804688	2	574.866757	1147.71896	0.89154	0.00051252	0.51975	0.00029879	1.4113	0.00081131	574.8671783106055	81.592	0.19984	81.592	81.413	81.613	0					5	4	2	0	0	0	0.027462	1	8389	8389		45.952	8.7928	1	300710	+		48471	22159	40206	40233	52007	52007					0.15101081659236115
RIIESQTNLI	10	Unmodified	_RIIESQTNLI_					0	0	0			REV__tr|A0A7D6VUG3|A0A7D6VUG3_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07285PE=4SV=1	REV__tr|A0A7D6VUG3|A0A7D6VUG3_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07285PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	594.3252563476562	2	593.843145	1185.67174	-0.27332	-0.00016231	-1.1188	-0.00066438	-1.3921	-0.00082668	593.8423789913527	70.552	0.60909	67.981	67.765	68.374	-2.5707					20	11	2	0	0	0	0.026826	1	5623	5623		44.377	1.5129	1	19397	+		48472	31675	40207	40234	52008	52008					0.08632757597570162
RIIKGFMI	8	Unmodified	_RIIKGFMI_					0	0	0		nc|ENSG00000113593|Q96BP3-2|PPWD1;ENSG00000113593|ENST00000261308|PPWD1	nc|ENSG00000113593|Q96BP3-2|PPWD1	nc|ENSG00000113593|Q96BP3-2|PPWD1	MULTI-MSMS	OvCa99_classI_Rep5	1	489.30352783203125	2	489.301873	976.589193	1.7975	0.0008795	0.13776	6.7406E-05	1.9352	0.00094691	489.30168756972813	87.157	0.61321	87.157	86.972	87.586	0					30	14	3	0	0	0	0.62934	1	9222	9222		57.811	9.8957	1	2330300			48473	2979	40208	40235	52009	52009					0.09996189055721061
RIILPQAF	8	Unmodified	_RIILPQAF_					0	0	0		tr|A0A553SST4|A0A553SST4_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03760PE=3SV=1	tr|A0A553SST4|A0A553SST4_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03760PE=3SV=1	tr|A0A553SST4|A0A553SST4_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03760PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.2972717285156	2	479.297645	956.580737	-0.079368	-3.8041E-05	-0.32096	-0.00015384	-0.40033	-0.00019188	479.29735582244143	116.79	1.2501	115.43	115.04	116.29	-1.3645					65	23	3	0	0	0	0.74971	1	10930	10930		26.796	0	1	647920			48474	34415	40209	40236	52010	52010					0.10070958410744879
RIIPTIITI	9	Unmodified	_RIIPTIITI_					0	0	0			REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|394|3|anti-sense	REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|394|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	520.347412109375	2	520.347335	1038.68012	1.3364	0.00069541	-1.6775	-0.00087287	-0.34103	-0.00017745	520.346442572037	129.27	2.7244	129.04	128.62	131.35	-0.22697					153	54	5	0	0	0	0.059253	1	12687	12687		113.41	3.2917	1	2451300	+		48475	28211	40210	40237	52011	52011					0.1623235630486306
RIIPTIITI	9	Unmodified	_RIIPTIITI_					0	0	0			REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|394|3|anti-sense	REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|394|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	520.3468017578125	2	520.347335	1038.68012	0.45282	0.00023562	-0.76983	-0.00040058	-0.31702	-0.00016496	520.346854726536	130.58	2.2687	129.46	129.13	131.39	-1.1166					144	45	5	0	0	0	0.16562	3	10348	10348;10439;10473		82.241	10.363	1	1601100	+		48476	28211	40210	40237	52012;52013;52014	52012					0.1623235630486306
RIIPTIITI	9	Unmodified	_RIIPTIITI_					0	0	0			REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|394|3|anti-sense	REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|394|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.3464965820312	2	520.347335	1038.68012	2.9948	0.0015583	-3.7019	-0.0019263	-0.70713	-0.00036795	520.3453507640438	130.94	2.3528	129.46	129.06	131.41	-1.4779					149	47	5	0	0	0	0.083631	3	12561	12561;12655;12704		101.6	7.3311	1	2675200	+		48477	28211	40210	40237	52015;52016;52017	52015					0.1623235630486306
RIISRRQKP	9	Unmodified	_RIISRRQKP_					0	0	0			REV__MECP2|p.D407Afs*2|1|0.1|ENSG00000169057|chrX:154030608-154030608|T/-|frameshift_variant	REV__MECP2|p.D407Afs*2|1|0.1|ENSG00000169057|chrX:154030608-154030608|T/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.2985229492188	2	577.367456	1152.72036	-1.0978	-0.00063381	-2.9991	-0.0017316	-4.0969	-0.0023654	577.3656378462836	28.295	0.24949	28.295	28.14	28.39	0					7	4	2	0	0	0	0.027462	1	914	914		10.866	0	1	34115	+		48478	21426	40211	40238	52018	52018					0.1501071574798516
RIIVESELR	9	Unmodified	_RIIVESELR_					0	0	0			REV__nc|ENSG00000183421|P57078|RIPK4	REV__nc|ENSG00000183421|P57078|RIPK4	MULTI-MSMS	OvCa99_classI_Rep5	1	557.8345336914062	2	557.83258	1113.65061	-0.31358	-0.00017492	0.19503	0.00010879	-0.11855	-6.6132E-05	557.832674262918	70.31	1.1449	70.31	70.046	71.191	0					61	28	4	0	0	0	0.13326	1	6724	6724		88.177	5.4265	1	16779000	+		48479	29048	40212	40239	52019	52019					0.09832792288693781
RIIVESELR	9	Unmodified	_RIIVESELR_					0	0	0			REV__nc|ENSG00000183421|P57078|RIPK4	REV__nc|ENSG00000183421|P57078|RIPK4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	557.83258	1113.65061	0.62875	0.00035074	-1.8462	-0.0010299	-1.2174	-0.00067911	557.8317489427694	72.786	0.42009	70.386	70.063	70.483	-2.3999	0.023936	-0.0022244	NaN	88.177	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29985	+		48480	29048	40212	40239							0.09832792288693781
RIIVESELR	9	Unmodified	_RIIVESELR_					0	0	0			REV__nc|ENSG00000183421|P57078|RIPK4	REV__nc|ENSG00000183421|P57078|RIPK4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	557.83258	1113.65061	-0.38319	-0.00021376	0.52428	0.00029246	0.14109	7.8702E-05	557.8327649143223	72.877	0.94099	70.39	69.934	70.875	-2.4873	0.028116	0.00042019	NaN	88.177	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30518	+		48481	29048	40212	40239							0.09832792288693781
RIIVNEEEL	9	Unmodified	_RIIVNEEEL_					0	0	0			REV__tr|A0A553SNU0|A0A553SNU0_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_25180PE=4SV=1	REV__tr|A0A553SNU0|A0A553SNU0_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_25180PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	557.811279296875	2	557.808771	1113.60299	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.624	1	82.624	82.124	83.124	0								0	0	0	0.18141	1	8564	8564		32.812	0.85756	1		+		48482	30453	40213	40240	52020	52020					0.05073093297869491
RIKDKVVTH	9	Unmodified	_RIKDKVVTH_					0	0	0		ENSG00000115183|ENST00000263635|TANC1;nc|ENSG00000115183|Q9C0D5-2|TANC1;ENST00000470074.1_1_2:160076105-160087520:+|nuORF	ENSG00000115183|ENST00000263635|TANC1	ENSG00000115183|ENST00000263635|TANC1	MULTI-MSMS	OvCa9_classI_Rep2	2	548.3350830078125	2	548.33529	1094.65603	-0.67354	-0.00036933	0.0061222	3.357E-06	-0.66742	-0.00036597	548.3353349433302	49.062	1.6355	46.302	45.879	47.514	-2.7603					116	32	5	0	0	0	0.18193	2	3125	3125;3151		79.451	7.6473	1	2328000			48483	3067	40214	40241	52021;52022	52021					0.11248515871170639
RIKEEQDH	8	Unmodified	_RIKEEQDH_					0	0	0			REV__ENSG00000277865|ENST00000622895|GOLGA6L22	REV__ENSG00000277865|ENST00000622895|GOLGA6L22	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.3124389648438	2	527.767437	1053.52032	0.016969	8.9558E-06	2.5729	0.0013579	2.5898	0.0013668	527.7677274353356	57.501	0.42333	57.501	57.309	57.732	0					19	9	3	0	0	0	0.028476	1	4830	4830		60.972	14.206	1	389580	+		48484	23636	40215	40242	52023	52023					-0.004298037102898888
RIKELCEEE	9	Unmodified	_RIKELCEEE_					0	0	0			REV__ENSG00000139433|ENST00000318348|GLTP	REV__ENSG00000139433|ENST00000318348|GLTP	MULTI-MSMS	OvCa99_classI_Rep5	1	574.7793579101562	2	574.784438	1147.55432	1.121	0.00064434	-4.344	-0.0024969	-3.223	-0.0018525	574.7817461516045	111.39	1.3608	111.39	110.98	112.34	0					64	29	3	0	0	0	0.13482	1	12647	12647		87.754	5.5138	1	1095500	+		48485	19610	40216	40243	52024	52024					-0.013551433335578622
RIKENFLV	8	Unmodified	_RIKENFLV_					0	0	0			REV__ENST00000561380.1_1_14:103805131-103805697:+|nuORF	REV__ENST00000561380.1_1_14:103805131-103805697:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8048095703125	2	509.805834	1017.59712	-0.41042	-0.00020923	-3.6368	-0.0018541	-4.0473	-0.0020633	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.74971	1	13716	13716		26.796	0	1	150140	+		48486	17443	40217	40244	52025	52025					0.08902039576832976
RIKFPTVVA	9	Unmodified	_RIKFPTVVA_					0	0	0		nc|ENSG00000093072|Q9NZK5-2|ADA2;ENSG00000093072|ENST00000399837|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	MULTI-MSMS	OvCa99_classI_Rep5	1	515.822998046875	2	515.824027	1029.6335	-0.73644	-0.00037987	-2.0803	-0.0010731	-2.8168	-0.001453	515.8228146090405	24.811	0.45592	24.811	24.586	25.042	0					17	8	3	0	0	0	0.65371	1	491	491		25.574	1.0549	1	122150			48487	1907	40218	40245	52026	52026					0.11986916473574638
RIKIKALIP	9	Unmodified	_RIKIKALIP_					0	0	0		ENSG00000103888|ENST00000394685|CEMIP	ENSG00000103888|ENST00000394685|CEMIP	ENSG00000103888|ENST00000394685|CEMIP	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.3124389648438	2	526.371144	1050.72774	-0.050953	-2.682E-05	-1.6202	-0.00085283	-1.6712	-0.00087965	526.3703636374569	57.508	0.63117	57.508	57.396	58.027	0					19	14	2	0	0	0	0.027462	1	4830	4830		12.959	0	1	297520			48488	2343	40219	40246	52027	52027					0.20440055295694037
RIKKHLSL	8	Unmodified	_RIKKHLSL_					0	0	0		ENSG00000107854|ENST00000371627|TNKS2	ENSG00000107854|ENST00000371627|TNKS2	ENSG00000107854|ENST00000371627|TNKS2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.7873840332031	2	497.829643	993.644734	1.2645	0.00062948	-1.438	-0.00071587	-0.17352	-8.6385E-05	497.82873209973394	67.71	0.48875	64.22	64.037	64.526	-3.4902					19	9	3	0	0	0	0.028476	1	4997	4997		26.796	0	1	41010			48489	2619	40220	40247	52028	52028					0.14765738567689368
RIKKTQDQI	9	Unmodified	_RIKKTQDQI_					0	0	0		nc|ENSG00000002834|Q14847-3|LASP1;ENST00000584106.1_1_17:37026403-37055075:+|nuORF;ENSG00000002834|ENST00000318008|LASP1;nc|ENSG00000002834|Q14847-2|LASP1	nc|ENSG00000002834|Q14847-3|LASP1	nc|ENSG00000002834|Q14847-3|LASP1	MULTI-MSMS	OvCa99_classI_Rep5	1	565.3385009765625	2	565.33803	1128.66151	-0.40628	-0.00022969	-0.69335	-0.00039198	-1.0996	-0.00062166	565.3376358398931	28.563	1.2958	28.563	28.19	29.486	0					53	25	5	0	0	0	0.046778	1	940	940		120.87	8.4575	1	3845400			48490	814	40221	40248	52029	52029					0.10232194662989968
RIKKYKHFKYI	11	Unmodified	_RIKKYKHFKYI_					0	0	0			REV__tr|A0A7D6VR67|A0A7D6VR67_9CLOTDUF3139domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05620PE=4SV=1	REV__tr|A0A7D6VR67|A0A7D6VR67_9CLOTDUF3139domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05620PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.2981262207031	3	508.645156	1522.91364	-0.68032	-0.00034604	3.9689	0.0020187	3.2885	0.0016727	508.64714709803724	39.972	0.76582	37.018	36.814	37.58	-2.9541					27	14	3	0	0	0	0.026344	1	1691	1691		19.263	9.1588	1	38392	+		48491	31392	40222	40249	52030	52030					0.17309832744354026
RIKKYKHFKYI	11	Unmodified	_RIKKYKHFKYI_					0	0	0			REV__tr|A0A7D6VR67|A0A7D6VR67_9CLOTDUF3139domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05620PE=4SV=1	REV__tr|A0A7D6VR67|A0A7D6VR67_9CLOTDUF3139domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05620PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	508.645156	1522.91364	-0.90484	-0.00046024	4.3008	0.0021876	3.3959	0.0017273	508.64733234760877	39.518	0.29639	36.808	36.558	36.854	-2.7097	-0.10507	7.9754E-05	NaN	14.086	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13831	+		48492	31392	40222	40249							0.17309832744354026
RIKQPTVKL	9	Unmodified	_RIKQPTVKL_					0	0	0		SPOCK2|p.D206Efs*25|1|0.11|ENSG00000107742|chr10:72067701-72067704|CAGG/-|frameshift_variant;ENSG00000107742|ENST00000373109|SPOCK2	SPOCK2|p.D206Efs*25|1|0.11|ENSG00000107742|chr10:72067701-72067704|CAGG/-|frameshift_variant	SPOCK2|p.D206Efs*25|1|0.11|ENSG00000107742|chr10:72067701-72067704|CAGG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	541.8548583984375	2	541.855858	1081.69716	-1.795	-0.00097265	1.1648	0.00063113	-0.63027	-0.00034151	541.8565280713503	51.838	1.3842	49.025	48.75	50.134	-2.8129					64	27	4	0	0	0	0.42676	1	3426	3426		49.442	5.3247	1	256500			48493	2612	40223	40250	52031	52031					0.15958276910646418
RIKRAFLI	8	Unmodified	_RIKRAFLI_					0	0	0		ENST00000465389.1_1_19:22551403-22551562:-|nuORF;ENSG00000109475|ENST00000394667|RPL34	ENST00000465389.1_1_19:22551403-22551562:-|nuORF	ENST00000465389.1_1_19:22551403-22551562:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	508.84124755859375	2	508.840011	1015.66547	-0.24042	-0.00012234	-0.36242	-0.00018441	-0.60285	-0.00030675	508.83978271147845	60.137	2.1554	60.137	59.839	61.994	0					122	51	5	0	0	0	0.37872	2	5273	5242;5273		92.191	29.212	1	16872000			48494	2715	40224	40251	52032;52033	52033					0.1582632894735525
RIKRDIMSI	9	Unmodified	_RIKRDIMSI_					0	0	0		ENSG00000159202|ENST00000360943|UBE2Z	ENSG00000159202|ENST00000360943|UBE2Z	ENSG00000159202|ENST00000360943|UBE2Z	MULTI-MSMS	OvCa99_classI_Rep5	1	566.3384399414062	2	566.336975	1130.6594	-0.018118	-1.0261E-05	-0.35309	-0.00019997	-0.37121	-0.00021023	566.3366498205547	56.203	1.8026	56.203	55.888	57.691	0					97	42	5	0	0	0	0.21231	1	4661	4661		74.255	21.318	1	13596000			48495	5992	40225	40252	52034	52034					0.09929442653515252
RIKREKIHER	10	Unmodified	_RIKREKIHER_					0	0	0		nc|ENSG00000143952|Q9P1Q0-3|VPS54	nc|ENSG00000143952|Q9P1Q0-3|VPS54	nc|ENSG00000143952|Q9P1Q0-3|VPS54	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.2702941894531	3	455.612626	1363.81605	-0.39349	-0.00017928	0.12109	5.5172E-05	-0.2724	-0.00012411	455.61269886312806	46.204	0.62533	43.131	42.876	43.501	-3.0724					18	11	2	0	0	0	0.027298	1	2399	2399		16.717	0	1	34356			48496	15076	40226	40253	52035	52035					0.14869443868201415
RIKRRALL	8	Unmodified	_RIKRRALL_					0	0	0		PKDREJ|p.H2048Tfs*3|1|0.05|ENSG00000130943|chr22:46257182-46257182|A/-|frameshift_variant;ENSG00000130943|ENST00000253255|PKDREJ	PKDREJ|p.H2048Tfs*3|1|0.05|ENSG00000130943|chr22:46257182-46257182|A/-|frameshift_variant	PKDREJ|p.H2048Tfs*3|1|0.05|ENSG00000130943|chr22:46257182-46257182|A/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.851318359375	2	513.35636	1024.69817	1.0987	0.00056403	3.4995	0.0017965	4.5982	0.0023605	513.3580153371627	143.17	1.4241	143.17	142.78	144.21	0					52	28	3	0	0	0	0.028476	1	16841	16841		35.201	0	1	101300			48497	4028	40227	40254	52036	52036					0.18680536070201015
RIKSILVLLS	10	Unmodified	_RIKSILVLLS_					0	0	0			REV__ENST00000431485.2_3_7:99215826-99216222:+|nuORF	REV__ENST00000431485.2_3_7:99215826-99216222:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.34326171875	2	571.386991	1140.75943	-0.49935	-0.00028532	-2.493	-0.0014245	-2.9924	-0.0017098	571.3856028985257	35.916	0.32019	35.916	35.799	36.119	0					10	6	2	0	0	0	0.026734	1	1864	1864		56.721	0	1	42145	+		48498	25721	40228	40255	52037	52037					0.19468003258998579
RIKSQELEV	9	Unmodified	_RIKSQELEV_					0	0	0		DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.F3496Wfs*92|1|0.14|ENSG00000197102|chr14:102034043-102034044|-/GACCTGGCAGCTGTCGAGGC|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	551.318359375	2	551.316763	1100.61897	-1.017	-0.00056071	0.3541	0.00019522	-0.66294	-0.00036549	551.3169361591595	49.921	1.4003	49.921	49.593	50.993	0					83	31	4	0	0	0	0.1804	1	3766	3766		79.713	0.26157	1	10286000			48499	767	40229	40256	52038	52038					0.07268799534745085
RIKVTGGSIPG	11	Unmodified	_RIKVTGGSIPG_					0	0	0		ENST00000450995.1_1_10:70985601-70992219:-|nuORF	ENST00000450995.1_1_10:70985601-70992219:-|nuORF	ENST00000450995.1_1_10:70985601-70992219:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	542.8262939453125	2	542.827298	1083.64004	-0.34066	-0.00018492	-0.81862	-0.00044437	-1.1593	-0.00062929	542.827263378176	66.666	2.0779	63.97	63.617	65.694	-2.6958					125	41	6	0	0	0	0.25285	1	5169	5169		72.879	7.4139	1	1203200			48500	12043	40230	40257	52039	52039					0.10156809634281672
RILAHHNLRLP	11	Unmodified	_RILAHHNLRLP_					0	0	0		ENST00000452475.5_1_7:72986280-72992879:-|nuORF;nc|nan|Q96MD7|C9orf85	ENST00000452475.5_1_7:72986280-72992879:-|nuORF	ENST00000452475.5_1_7:72986280-72992879:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	447.762451171875	3	447.273834	1338.79967	-0.68168	-0.0003049	-0.4367	-0.00019532	-1.1184	-0.00050022	447.2735941272079	42.493	1.0805	39.513	39.167	40.247	-2.9804					44	20	3	0	0	0	0.026042	1	1941	1941		20.03	5.9445	1	63335			48501	12054	40231	40258	52040	52040					0.14382362702099272
RILASWTN	8	Unmodified	_RILASWTN_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;THADA|p.R1942Ifs*6|1|0.05|ENSG00000115970|chr2:43230985-43230986|-/CTGGGGGA|frameshift_variant;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;ENST00000408045.7_1_2:43571220-43805671:-|nuORF;THADA|p.I470Dfs*6|2|0.05|ENSG00000115970|chr2:43574657-43574658|-/C|frameshift_variant;nc|ENSG00000115970|Q6YHU6-6|THADA;nc|ENSG00000115970|Q6YHU6-5|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-SECPEP	OvCa9_classI_Rep2	2	481.25189208984375	2	480.766709	959.518865	-0.91484	-0.00043982	-1.8796	-0.00090365	-2.7944	-0.0013435	480.7657391693353	32.846	0.49482	30.136	30.025	30.52	-2.7097					12	9	2	0	0	0	0.028476	1	1111	1111		25.45	0	1	37504			48502	3144	40232	40259	52041	52041					0.037486069915985354
RILDESHSI	9	Unmodified	_RILDESHSI_					0	0	0		ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8;ENST00000554384.1_1_14:21876861-21881122:-|nuORF	ENSG00000100888|ENST00000646647|CHD8	ENSG00000100888|ENST00000646647|CHD8	MULTI-MSMS	OvCa99_classI_Rep5	1	535.2866821289062	2	535.285463	1068.55637	0.26561	0.00014218	-0.43609	-0.00023343	-0.17048	-9.1254E-05	535.285180458021	58.045	0.67024	58.045	57.818	58.488	0					32	15	3	0	0	0	0.14855	1	4902	4902		85.161	5.4482	1	3872300			48503	2115	40233	40260	52042	52042					0.024836534665837462
RILDMVAEAQ	10	Unmodified	_RILDMVAEAQ_					0	0	0			REV__tr|A0A553SHM1|A0A553SHM1_NIACItRNAmodificationGTPaseMnmEOS=NialliacirculansOX=1397GN=mnmEPE=3SV=1	REV__tr|A0A553SHM1|A0A553SHM1_NIACItRNAmodificationGTPaseMnmEOS=NialliacirculansOX=1397GN=mnmEPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.7899169921875	2	573.302798	1144.59104	-0.33022	-0.00018932	-1.6632	-0.00095349	-1.9934	-0.0011428	573.8029977941333	30.247	0.29705	30.247	30.086	30.383	0					12	5	4	0	0	0	0.026577	1	1150	1150		58.23	0	1	90874	+		48504	29818	40234	40261	52043	52043					0.024531532830224023
RILFIKVK	8	Unmodified	_RILFIKVK_					0	0	0			REV__ENST00000456514.1_1_10:128102763-128102898:-|nuORF	REV__ENST00000456514.1_1_10:128102763-128102898:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.8409423828125	2	508.852587	1015.69062	-0.2701	-0.00013744	2.1519	0.001095	1.8818	0.00095758	509.35462052593573	60.196	0.24133	60.196	59.997	60.238	0					7	5	2	0	0	0	0.028476	1	5212	5212		47.916	0	1	175310	+		48505	26030	40235	40262	52044	52044					0.18340383749944067
RILGIEEQPP	10	Unmodified	_RILGIEEQPP_					0	0	0			REV__ENST00000466016.5_1_17:45904324-45908883:-|nuORF	REV__ENST00000466016.5_1_17:45904324-45908883:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	576.3549194335938	2	576.324588	1150.63462	-1.7288	-0.00099634	-1.8261	-0.0010524	-3.5549	-0.0020488	576.3232486012649	72.963	0.24187	69.567	69.495	69.736	-3.3961					5	4	2	0	0	0	0.026606	1	5635	5635		52.937	23.767	1	16220	+		48506	20595	40236	40263	52045	52045					0.06533086051808823
RILHRLLRRYR	11	Unmodified	_RILHRLLRRYR_					0	0	0		ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	ENST00000432746.1_1_7:102781798-102782185:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.8284301757812	3	517.998815	1550.97462	-0.12531	-6.4913E-05	1.7556	0.0009094	1.6303	0.00084449	518.000730187095	122.38	0.75524	121.01	120.6	121.36	-1.3666					20	14	2	0	0	0	0.026553	1	11586	11586		3.2113	1.8894	1	16472			48507	11815	40237	40264	52046	52046					0.2211678256715004
RILKIEVLI	9	Unmodified	_RILKIEVLI_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54;nc|ENSG00000188596|Q96N23-2|CFAP54;ENST00000342887.1_1_12:97043703-97159031:+|nuORF	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.34765625	2	548.876259	1095.73797	1.2486	0.00068532	0.53637	0.0002944	1.785	0.00097972	548.8763731229475	111.81	0.82701	111.81	111.51	112.34	0					36	17	3	0	0	0	0.027462	1	12732	12732		45.972	0	1	179260			48508	8482	40238	40265	52047	52047					0.19392618230290282
RILKITTEI	9	Unmodified	_RILKITTEI_					0	0	0		ENST00000406892.6_1_19:12098635-12112633:+|nuORF	ENST00000406892.6_1_19:12098635-12112633:+|nuORF	ENST00000406892.6_1_19:12098635-12112633:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	543.84716796875	2	543.847699	1085.68084	1.3721	0.00074623	-1.585	-0.000862	-0.21287	-0.00011577	543.8460420564121	79.269	0.94762	79.269	78.996	79.944	0					47	23	4	0	0	0	0.19758	1	8071	8071		76.774	5.4784	1	3671800			48509	11488	40239	40266	52048	52048					0.14143150953873374
RILKRALF	8	Unmodified	_RILKRALF_					0	0	0			REV__ENST00000397086.6_2_16:2303455-2303809:-|nuORF	REV__ENST00000397086.6_2_16:2303455-2303809:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	508.8409423828125	2	508.840011	1015.66547	-0.24042	-0.00012234	-0.36242	-0.00018441	-0.60285	-0.00030675	508.83978271147845	60.137	2.1554	60.137	59.839	61.994	0					122	51	5	0	0	0	0.61758	1	5212	5212		60.294	7.9948	1	16872000	+		48510	25343	40240	40267	52049	52049					0.1582632894736662
RILKVAKV	8	Unmodified	_RILKVAKV_					0	0	0			REV__tr|A0A7D6VZK5|A0A7D6VZK5_9CLOTThreonine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=thrSPE=3SV=1	REV__tr|A0A7D6VZK5|A0A7D6VZK5_9CLOTThreonine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=thrSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	463.7980041503906	2	463.829112	925.643671	0.166	7.6997E-05	3.2186	0.0014929	3.3846	0.0015699	463.8302803192933	70.711	0.50645	68.14	67.815	68.322	-2.5707					13	9	2	0	0	0	0.028476	1	5655	5655		25.45	0	1	13650	+		48511	31838	40241	40268	52050	52050					0.17787524198797655
RILKVAKV	8	Unmodified	_RILKVAKV_					0	0	0			REV__tr|A0A7D6VZK5|A0A7D6VZK5_9CLOTThreonine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=thrSPE=3SV=1	REV__tr|A0A7D6VZK5|A0A7D6VZK5_9CLOTThreonine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=thrSPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	463.829112	925.643671	0.33361	0.00015474	7.7197	0.0035806	8.0533	0.0037353	463.8320406683471	70.864	0.46267	68.144	67.853	68.316	-2.7196	0.0021883	0.0020994	NaN	25.45	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9642.4	+		48512	31838	40241	40268							0.17787524198797655
RILLHLESEMA	11	Unmodified	_RILLHLESEMA_					0	0	0		ENST00000397031.2_1_2:182825941-182826409:-|nuORF	ENST00000397031.2_1_2:182825941-182826409:-|nuORF	ENST00000397031.2_1_2:182825941-182826409:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	437.9095764160156	3	437.907829	1310.70166	0.88556	0.00038779	2.9966	0.0013123	3.8822	0.0017	437.9090479310282	33.098	0.99093	30.403	30.203	31.193	-2.6954					44	19	4	0	0	0	0.72472	1	851	851		19.263	3.2559	1	107640			48513	11336	40242	40269	52051	52051					0.05873373271242599
RILLIMLPI	9	Unmodified	_RILLIMLPI_					0	0	0		tr|A0A7D6ZSU6|A0A7D6ZSU6_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_17445PE=3SV=1	tr|A0A7D6ZSU6|A0A7D6ZSU6_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_17445PE=3SV=1	tr|A0A7D6ZSU6|A0A7D6ZSU6_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_17445PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.3453369140625	2	541.36193	1080.70931	-0.20552	-0.00011126	1.982	0.001073	1.7765	0.00096171	541.3637271670241	81.472	0.56435	79.823	79.614	80.179	-1.6485					15	10	2	0	0	0	0.027462	1	6939	6939		35.201	0	1	23382			48514	35744	40243	40270	52052	52052					0.17218177329482387
RILLNLRRP	9	Unmodified	_RILLNLRRP_					0	0	0		tr|A0A553SHQ7|A0A553SHQ7_NIACIGlucosedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_13440PE=4SV=1	tr|A0A553SHQ7|A0A553SHQ7_NIACIGlucosedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_13440PE=4SV=1	tr|A0A553SHQ7|A0A553SHQ7_NIACIGlucosedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_13440PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8800659179688	2	575.880199	1149.74584	2.6187	0.0015081	-0.52451	-0.00030205	2.0942	0.001206	575.8797536026407	130.77	1.5941	129.29	128.86	130.45	-1.4779					88	32	4	0	0	0	0.70177	1	12600	12600		17.365	0	1	237440			48515	33298	40244	40271	52053	52053					0.1769619027038516
RILLRILF	8	Unmodified	_RILLRILF_					0	0	0			REV__tr|A0A553SQN3|A0A553SQN3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07985PE=4SV=1	REV__tr|A0A553SQN3|A0A553SQN3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07985PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.3143920898438	2	522.358037	1042.70152	-0.80477	-0.00042038	-1.051	-0.000549	-1.8558	-0.00096937	522.3574429877698	29.661	0.14908	29.661	29.586	29.735	0					4	2	2	0	0	0	0.028476	1	1072	1072		8.8223	0	1	18288	+		48516	30648	40245	40272	52054	52054					0.18187786124212835
RILPILPML	9	Oxidation (M)	_RILPILPM(Oxidation (M))L_		RILPILPM(1)L		RILPILPM(45)L	0	0	1			REV__tr|A0A7D6ZFF5|A0A7D6ZFF5_9CLOTAldehydedehydrogenaseEutEOS=ClostridiumintestinaleOX=36845GN=HZF06_17695PE=4SV=1	REV__tr|A0A7D6ZFF5|A0A7D6ZFF5_9CLOTAldehydedehydrogenaseEutEOS=ClostridiumintestinaleOX=36845GN=HZF06_17695PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	541.3467407226562	2	541.343738	1080.67292	-0.52558	-0.00028452	2.4364	0.001319	1.9109	0.0010344	541.3451745441885	82.59	3.0818	80.294	79.634	82.716	-2.2963					214	63	7	0	0	0	0.47884	2	4722	4722;4737		44.531	11.971	1	3973000	+		48517	31969	40246	40273	52055;52056	52055		710			0.13581300432747412
RILPILPML	9	Oxidation (M)	_RILPILPM(Oxidation (M))L_		RILPILPM(1)L		RILPILPM(42)L	0	0	1			REV__tr|A0A7D6ZFF5|A0A7D6ZFF5_9CLOTAldehydedehydrogenaseEutEOS=ClostridiumintestinaleOX=36845GN=HZF06_17695PE=4SV=1	REV__tr|A0A7D6ZFF5|A0A7D6ZFF5_9CLOTAldehydedehydrogenaseEutEOS=ClostridiumintestinaleOX=36845GN=HZF06_17695PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.3474731445312	2	541.343738	1080.67292	-0.94096	-0.00050939	3.2639	0.0017669	2.3229	0.0012575	541.3456613983815	82.909	2.3512	80.226	79.684	82.036	-2.683					196	48	7	0	0	0	0.50066	1	6939	6939		42.474	17.955	1	3004400	+		48518	31969	40246	40273	52057	52057		710			0.13581300432747412
RILPKPTRK	9	Unmodified	_RILPKPTRK_					0	0	0		ENST00000444127.1_1_1:68708159-68708657:-|nuORF;ENSG00000171863|ENST00000645674|RPS7	ENST00000444127.1_1_1:68708159-68708657:-|nuORF	ENST00000444127.1_1_1:68708159-68708657:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.8698120117188	2	554.8693	1107.72405	1.2589	0.0006985	-1.5027	-0.00083378	-0.24381	-0.00013528	554.8683554320133	36.062	1.2954	33.213	32.99	34.285	-2.849					70	25	4	0	0	0	0.50149	1	1201	1201		42.396	11.892	1	499100			48519	7243	40247	40274	52058	52058					0.17449385521831573
RILPSRRPL	9	Unmodified	_RILPSRRPL_					0	0	0			REV__nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	REV__nc|ENSG00000168781|Q6PFW1-5|PPIP5K1	MULTI-SECPEP	OvCa9_classI_Rep2	2	553.8012084960938	2	554.359099	1106.70365	0.37195	0.00020619	-1.7208	-0.00095396	-1.3489	-0.00074777	554.3577183289133	59.364	0.52563	56.584	56.347	56.872	-2.7801					10	9	2	0	0	0	0.027462	1	4353	4353		30.504	0	1	7219.3	+		48520	21403	40248	40275	52059	52059					0.15456214862024353
RILQHFIH	8	Unmodified	_RILQHFIH_					0	0	0			REV__ENSG00000134256|ENST00000682167|CD101	REV__ENSG00000134256|ENST00000682167|CD101	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.778564453125	2	532.311618	1062.60868	-1.0163	-0.00054096	3.8865	0.0020689	2.8703	0.0015279	532.8127929042948	65.749	0.74756	65.749	65.426	66.174	0					27	18	3	0	0	0	0.028476	1	6037	6037		44.531	2.0566	1	381400	+		48521	19189	40249	40276	52060	52060					0.07988281390839802
RILQPRLV	8	Unmodified	_RILQPRLV_					0	0	0			REV__ENSG00000138303|ENST00000672957|ASCC1	REV__ENSG00000138303|ENST00000672957|ASCC1	MULTI-MSMS	OvCa9_classI_Rep3	3	497.8300476074219	2	497.829643	993.644734	-0.82413	-0.00041027	0.44661	0.00022234	-0.37752	-0.00018794	497.829829623416	90.268	2.2343	88.187	87.798	90.033	-2.0805					128	43	4	0	0	0	0.73288	1	5598	5598		35.201	0	1	1075500	+		48522	19526	40250	40277	52061	52061					0.14765738567700737
RILRMVDN	8	Unmodified	_RILRMVDN_					0	0	0		ENST00000287701.14_1_8:28747965-28821364:+|nuORF	ENST00000287701.14_1_8:28747965-28821364:+|nuORF	ENST00000287701.14_1_8:28747965-28821364:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.8249206542969	2	508.787118	1015.55968	-0.26575	-0.00013521	-3.0008	-0.0015268	-3.2666	-0.001662	509.28758222260245	29.797	0.29886	29.797	29.636	29.935	0					13	5	3	0	0	0	0.028476	1	1106	1106		44.117	12.162	1	59781			48523	10078	40251	40278	52062	52062					0.052526250395885654
RILRTETAG	9	Unmodified	_RILRTETAG_					0	0	0		tr|A0A7D6VNX6|A0A7D6VNX6_9CLOTRibosomalRNAsmallsubunitmethyltransferaseEOS=ClostridiumintestinaleOX=36845GN=HZF06_16470PE=3SV=1	tr|A0A7D6VNX6|A0A7D6VNX6_9CLOTRibosomalRNAsmallsubunitmethyltransferaseEOS=ClostridiumintestinaleOX=36845GN=HZF06_16470PE=3SV=1	tr|A0A7D6VNX6|A0A7D6VNX6_9CLOTRibosomalRNAsmallsubunitmethyltransferaseEOS=ClostridiumintestinaleOX=36845GN=HZF06_16470PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.8249206542969	2	508.795998	1015.57744	-0.20791	-0.00010579	-0.95098	-0.00048386	-1.1589	-0.00058964	508.7959392484243	29.96	0.25173	29.96	29.835	30.086	0					7	4	2	0	0	0	0.027462	1	1106	1106		34.173	0	1	31077			48524	34735	40252	40279	52063	52063					0.07027663566088904
RILSGQEE	8	Unmodified	_RILSGQEE_					0	0	0		nc|ENSG00000054179|Q9Y5L3-3|ENTPD2;nc|ENSG00000054179|Q9Y5L3-2|ENTPD2;ENSG00000054179|ENST00000355097|ENTPD2	nc|ENSG00000054179|Q9Y5L3-3|ENTPD2	nc|ENSG00000054179|Q9Y5L3-3|ENTPD2	MULTI-MSMS	OvCa99_classI_Rep5	1	466.2458190917969	2	466.245806	930.47706	-0.79933	-0.00037269	0.54468	0.00025395	-0.25466	-0.00011873	466.2459772681625	26.866	0.59874	26.866	26.642	27.241	0					31	11	5	0	0	0	0.59148	1	737	737		65.803	2.4969	1	1028700			48525	1205	40253	40280	52064	52064					0.009040065124395369
RILSGVVTK	9	Unmodified	_RILSGVVTK_					0	0	0		ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.8149719238281	2	486.813659	971.612765	0.0092768	4.5161E-06	-0.57834	-0.00028154	-0.56906	-0.00027703	486.81330722283235	57.818	1.9114	54.473	54.138	56.049	-3.3449					99	37	4	0	0	0	0.075543	2	3787	3775;3787		104.06	16.302	1	1449700			48526	4977	40254	40281	52065;52066	52066					0.12582326093900065
RILTEFELL	9	Unmodified	_RILTEFELL_					0	0	0		nc|ENSG00000204616|Q9BZY9-2|TRIM31;ENSG00000204616|ENST00000376734|TRIM31	nc|ENSG00000204616|Q9BZY9-2|TRIM31	nc|ENSG00000204616|Q9BZY9-2|TRIM31	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.328857421875	2	567.331882	1132.64921	-0.48412	-0.00027465	-3.1025	-0.0017602	-3.5866	-0.0020348	567.3299446868054	145.54	4.8872	144.11	142.68	147.57	-1.4357					247	95	4	0	0	0	0.50149	1	14193	14193		42.396	0.96952	1	208760			48527	9011	40255	40282	52067	52067					0.0881915819995811
RILVRRIL	8	Unmodified	_RILVRRIL_					0	0	0		HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|89|3|sense	HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|89|3|sense	HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|89|3|sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.8422241210938	2	519.86656	1037.71857	0.45696	0.00023756	-2.0844	-0.0010836	-1.6274	-0.00084604	520.365986020516	103.8	0.20967	102.37	102.29	102.5	-1.4347					5	3	2	0	0	0	0.028476	1	7210	7210		31.955	0	1	4891.9			48528	14470	40256	40283	52068	52068					0.20121706730037658
RIMDQTLKA	9	Unmodified	_RIMDQTLKA_					0	0	0		nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-4|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-10|TPM1;ENST00000560975.5_1_15:63335715-63353895:+|nuORF	nc|ENSG00000140416|P09493-8|TPM1	nc|ENSG00000140416|P09493-8|TPM1	MULTI-MSMS	OvCa99_classI_Rep5	1	538.3016357421875	2	538.300059	1074.58556	-0.37922	-0.00020413	-0.25823	-0.000139	-0.63744	-0.00034314	538.2998591359566	54.272	1.0959	54.272	53.969	55.064	0					57	25	4	0	0	0	0.017173	1	4362	4362		150.36	47.588	1	9420300			48529	15054	40257	40284	52069	52069					0.051254744912057504
RIMEQRVAN	9	Unmodified	_RIMEQRVAN_					0	0	0			REV__ENSG00000120756|ENST00000457734|PLS1	REV__ENSG00000120756|ENST00000457734|PLS1	MULTI-SECPEP	OvCa9_classI_Rep3	3	557.8233032226562	2	558.800757	1115.58696	-0.68331	-0.00038184	-3.6715	-0.0020516	-4.3548	-0.0024335	559.3000773057836	99.341	1.1729	97.656	97.217	98.39	-1.685					34	22	2	0	0	0	0.027462	1	6643	6643		18.262	8.5564	1	168630	+		48530	18515	40258	40285	52070	52070					0.033791085799748544
RIMGGGARWGV	11	Unmodified	_RIMGGGARWGV_					0	0	0		ENST00000367988.7_1_1:161196159-161196231:+|nuORF	ENST00000367988.7_1_1:161196159-161196231:+|nuORF	ENST00000367988.7_1_1:161196159-161196231:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.8324584960938	2	580.311292	1158.60803	-1.3444	-0.00078017	-3.5175	-0.0020413	-4.8619	-0.0028214	580.3094973697332	36.634	0.6719	36.634	36.397	37.069	0					22	14	3	0	0	0	0.024886	1	1942	1942		82.241	25.519	1	93199			48531	10858	40259	40286	52071	52071					0.035071186794539244
RIMKAQAL	8	Unmodified	_RIMKAQAL_					0	0	0		ENSG00000080824|ENST00000216281|HSP90AA1;nc|ENSG00000080824|P07900-2|HSP90AA1;ENST00000506915.1_1_4:190395906-190396341:+|nuORF;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF;nc|ENSG00000205100|Q58FG1|HSP90AA4P	ENSG00000080824|ENST00000216281|HSP90AA1;ENSG00000096384|ENST00000371646|HSP90AB1;ENST00000378770.1_1_4:190394307-190396341:+|nuORF	ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OvCa99_classI_Rep5	1	465.781494140625	2	465.781305	929.548056	-0.60566	-0.00028211	-0.18672	-8.6969E-05	-0.79238	-0.00036908	465.7812243443797	44.373	2.2455	44.373	44.123	46.369	0					151	50	5	0	0	0	0.2826	2	2987	2987;3010		110.34	27.05	1	14786000			48532	1643;1946;11112	40260	40287	52072;52073	52072					0.08046428016234586
RIMPPLLLL	9	Unmodified	_RIMPPLLLL_					0	0	0		ENSG00000147256|ENST00000276211|ARHGAP36;ARHGAP36|p.D83Efs*16|1|0.54|ENSG00000147256|chrX:131081912-131081915|GACA/-|frameshift_variant	ENSG00000147256|ENST00000276211|ARHGAP36	ENSG00000147256|ENST00000276211|ARHGAP36	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.348388671875	2	533.34628	1064.67801	-1.4272	-0.00076117	4.4611	0.0023793	3.034	0.0016182	533.3485712368183	94.648	1.5521	92.18	91.811	93.363	-2.4685					99	30	4	0	0	0	0.42057	1	8369	8369		50.025	0	1	1202000			48533	5346	40261	40288	52074	52074					0.14825604295401718
RIMSCSPDTQ	10	Unmodified	_RIMSCSPDTQ_					0	0	0		UBE2O|p.E1121Rfs*4|1|0.12|ENSG00000175931|chr17:76391461-76391462|-/G|frameshift_variant;ENSG00000175931|ENST00000319380|UBE2O	UBE2O|p.E1121Rfs*4|1|0.12|ENSG00000175931|chr17:76391461-76391462|-/G|frameshift_variant	UBE2O|p.E1121Rfs*4|1|0.12|ENSG00000175931|chr17:76391461-76391462|-/G|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.783203125	2	569.254991	1136.49543	-0.15443	-8.7907E-05	-0.31312	-0.00017825	-0.46755	-0.00026615	569.2547253908272	35.574	0.6525	35.574	35.1	35.753	0					22	13	3	0	0	0	0.026734	1	1754	1754		39.253	24.388	1	123560			48534	7572	40262	40289	52075	52075					-0.06735942899535985
RINIALAWL	9	Unmodified	_RINIALAWL_					0	0	0		tr|A0A553SR17|A0A553SR17_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_00125PE=4SV=1	tr|A0A553SR17|A0A553SR17_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_00125PE=4SV=1	tr|A0A553SR17|A0A553SR17_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_00125PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	535.3268432617188	2	535.329476	1068.6444	-1.2502	-0.00066929	-2.9485	-0.0015784	-4.1988	-0.0022477	535.3279070397938	59.315	2.607	56.535	55.888	58.495	-2.7801					134	49	4	0	0	0	0.53957	1	4295	4295		38.806	6.8513	1	990330			48535	34220	40263	40290	52076	52076					0.11282318847815986
RINKIGKKF	9	Unmodified	_RINKIGKKF_					0	0	0		ENST00000465732.5_1_21:44488493-44493403:-|nuORF;ENSG00000160200|ENST00000398165|CBS;nc|ENSG00000160200|P35520-2|CBS	ENST00000465732.5_1_21:44488493-44493403:-|nuORF	ENST00000465732.5_1_21:44488493-44493403:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.3245239257812	2	552.356025	1102.6975	-0.61977	-0.00034233	-4.3986	-0.0024296	-5.0184	-0.0027719	552.3536804574097	29.141	0.19978	29.141	29.037	29.237	0					5	3	2	0	0	0	0.027462	1	1006	1006		23.042	10.231	1	13000			48536	6044	40264	40291	52077	52077					0.1502569663050508
RINQDAVRI	9	Unmodified	_RINQDAVRI_					0	0	0		tr|A0A7D6ZXA0|A0A7D6ZXA0_9CLOTArsenatereductaseArsCOS=ClostridiumintestinaleOX=36845GN=HZF06_12560PE=4SV=1	tr|A0A7D6ZXA0|A0A7D6ZXA0_9CLOTArsenatereductaseArsCOS=ClostridiumintestinaleOX=36845GN=HZF06_12560PE=4SV=1	tr|A0A7D6ZXA0|A0A7D6ZXA0_9CLOTArsenatereductaseArsCOS=ClostridiumintestinaleOX=36845GN=HZF06_12560PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	542.8159790039062	2	542.814722	1083.61489	-0.46752	-0.00025378	-0.21633	-0.00011743	-0.68385	-0.0003712	542.8146760433806	55.547	0.65817	55.547	55.315	55.973	0					25	15	3	0	0	0	0.16562	1	4560	4560		82.241	1.7859	1	2987200			48537	35870	40265	40292	52078	52078					0.07642754831681486
RINTPPLTKLV	11	Unmodified	_RINTPPLTKLV_					0	0	0			REV__ENST00000546455.5_1_12:47473502-47610158:+|nuORF	REV__ENST00000546455.5_1_12:47473502-47610158:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	626.390869140625	2	626.392805	1250.77106	-6.1325	-0.0038414	-2.9926	-0.0018746	-9.1252	-0.0057159	626.3911365928932	165.03	1.5192	163.62	163.01	164.52	-1.4083					77	54	2	0	0	0	0.72491	1	14387	14387		16.717	1.0756	1	34340	+		48538	27420	40266	40293	52079	52079					0.1557020028228635
RIPAFFLPP	9	Unmodified	_RIPAFFLPP_					0	0	0			REV__nc|ENSG00000100258|Q9BU23-3|LMF2	REV__nc|ENSG00000100258|Q9BU23-3|LMF2	MULTI-MSMS	OvCa9_classI_Rep2	2	529.3082885742188	2	529.313295	1056.61204	-1.2294	-0.00065075	-2.8405	-0.0015035	-4.07	-0.0021543	529.309695523309	47.811	1.2925	45.101	44.687	45.979	-2.7097					50	25	3	0	0	0	0.63108	1	2927	2927		28.254	1.4582	1	311230	+		48539	17388	40267	40294	52080	52080					0.08599531444838249
RIPCHIII	8	Unmodified	_RIPCHIII_					0	0	0		tr|A0A7D6ZGB9|A0A7D6ZGB9_9CLOTPocRligand-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17685PE=4SV=1	tr|A0A7D6ZGB9|A0A7D6ZGB9_9CLOTPocRligand-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17685PE=4SV=1	tr|A0A7D6ZGB9|A0A7D6ZGB9_9CLOTPocRligand-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17685PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	482.7924499511719	2	482.791672	963.568792	1.1104	0.00053611	-0.24312	-0.00011738	0.86731	0.00041873	482.79146252518456	155.03	3.9291	155.03	153.98	157.91	0					134	77	2	0	0	0	0.74679	2	18226	18160;18226		28.254	4.0515	1	132880			48540	35539	40268	40295	52081;52082	52082					0.08555018395918523
RIPGRCRR	8	Unmodified	_RIPGRCRR_					0	0	0		nc|ENSG00000261359|I3L0S3|PYCARD-AS1	nc|ENSG00000261359|I3L0S3|PYCARD-AS1	nc|ENSG00000261359|I3L0S3|PYCARD-AS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.29583740234375	2	507.298519	1012.58248	-1.972	-0.0010004	-3.0377	-0.001541	-5.0097	-0.0025414	507.2969478482551	50.146	1.1966	47.004	46.455	47.651	-3.1416					51	22	3	0	0	0	0.73938	1	2872	2872		31.955	3.8734	1	263760			48541	15364	40269	40296	52083	52083					0.07669688947714803
RIPGRCRR	8	Unmodified	_RIPGRCRR_					0	0	0		nc|ENSG00000261359|I3L0S3|PYCARD-AS1	nc|ENSG00000261359|I3L0S3|PYCARD-AS1	nc|ENSG00000261359|I3L0S3|PYCARD-AS1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	507.298519	1012.58248	-1.2933	-0.0006561	-3.1738	-0.00161	-4.4671	-0.0022662	507.29676124964107	49.751	1.2399	46.99	46.424	47.664	-2.7603	-0.00693	-0.00010106	NaN	31.955	60	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105620			48542	15364	40269	40296							0.07669688947714803
RIPGRKRGR	9	Unmodified	_RIPGRKRGR_					0	0	0		ENSG00000146285|ENST00000369020|SCML4	ENSG00000146285|ENST00000369020|SCML4	ENSG00000146285|ENST00000369020|SCML4	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.3544311523438	2	548.35214	1094.68973	-0.42992	-0.00023574	2.5287	0.0013866	2.0987	0.0011508	548.3534240706001	98.665	1.4433	96.286	95.971	97.414	-2.3786					78	27	3	0	0	0	0.56889	1	8777	8777		35.618	2.8059	1	478150			48543	5283	40270	40297	52084	52084					0.14616982153597746
RIPGVEPDDI	10	Unmodified	_RIPGVEPDDI_					0	0	0		tr|A0A7D6VSL8|A0A7D6VSL8_9CLOTATP-dependentRNAhelicaseDbpAOS=ClostridiumintestinaleOX=36845GN=dbpAPE=3SV=1	tr|A0A7D6VSL8|A0A7D6VSL8_9CLOTATP-dependentRNAhelicaseDbpAOS=ClostridiumintestinaleOX=36845GN=dbpAPE=3SV=1	tr|A0A7D6VSL8|A0A7D6VSL8_9CLOTATP-dependentRNAhelicaseDbpAOS=ClostridiumintestinaleOX=36845GN=dbpAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.9788818359375	2	555.793121	1109.57169	-1.0548	-0.00058628	3.9113	0.0021739	2.8564	0.0015876	555.7951012535552	87.587	0.85625	84.961	84.748	85.605	-2.6269					33	16	3	0	0	0	0.027028	1	7438	7438		24.519	3.5723	1	201540			48544	35036	40271	40298	52085	52085					0.021285202637500333
RIPGVEPDDI	10	Unmodified	_RIPGVEPDDI_					0	0	0		tr|A0A7D6VSL8|A0A7D6VSL8_9CLOTATP-dependentRNAhelicaseDbpAOS=ClostridiumintestinaleOX=36845GN=dbpAPE=3SV=1	tr|A0A7D6VSL8|A0A7D6VSL8_9CLOTATP-dependentRNAhelicaseDbpAOS=ClostridiumintestinaleOX=36845GN=dbpAPE=3SV=1	tr|A0A7D6VSL8|A0A7D6VSL8_9CLOTATP-dependentRNAhelicaseDbpAOS=ClostridiumintestinaleOX=36845GN=dbpAPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	555.793121	1109.57169	-1.3536	-0.00075233	5.5044	0.0030593	4.1507	0.002307	555.7960232337525	87.14	0.92042	84.964	84.734	85.654	-2.1768	0.0015123	0.00046705	NaN	24.519	41	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232280			48545	35036	40271	40298							0.021285202637500333
RIPLIFQKL	9	Unmodified	_RIPLIFQKL_					0	0	0		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-MSMS	OvCa99_classI_Rep5	1	564.3709716796875	2	564.368601	1126.72265	0.16516	9.3214E-05	-0.43976	-0.00024819	-0.2746	-0.00015497	564.3682717179497	104.88	0.90774	104.88	104.45	105.36	0					50	20	3	0	0	0	0.13482	1	11770	11770		87.754	13.499	1	1112100			48546	5286	40272	40299	52086	52086					0.16435751433073165
RIPRDILRSAL	11	Unmodified	_RIPRDILRSAL_					0	0	0			REV__tr|A0A553SNV9|A0A553SNV9_NIACIPolyribonucleotidenucleotidyltransferaseOS=NialliacirculansOX=1397GN=pnpPE=3SV=1	REV__tr|A0A553SNV9|A0A553SNV9_NIACIPolyribonucleotidenucleotidyltransferaseOS=NialliacirculansOX=1397GN=pnpPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	437.2735900878906	3	437.273611	1308.799	1.0101	0.00044167	-1.2433	-0.00054365	-0.23323	-0.00010198	437.27305961907143	69.199	2.757	66.384	66.063	68.82	-2.8144					169	54	5	0	0	0	0.55686	3	3066	3066;3072;3097		48.602	9.8875	1	1037200	+		48547	30462	40273	40300	52087;52088;52089	52087					0.1569552326241137
RIPRIRQVIQ	10	Unmodified	_RIPRIRQVIQ_					0	0	0		ENSG00000155304|ENST00000285667|HSPA13	ENSG00000155304|ENST00000285667|HSPA13	ENSG00000155304|ENST00000285667|HSPA13	MULTI-MSMS	OvCa9_classI_Rep3	3	426.9422912597656	3	426.942084	1277.80442	0.74077	0.00031627	-1.3177	-0.00056258	-0.57694	-0.00024632	426.94149785984115	79.39	2.4757	77.05	76.514	78.99	-2.3399					139	48	4	0	0	0	0.77834	1	4268	4268		21.686	3.1547	1	472050			48548	5777	40274	40301	52090	52090					0.1766324684490428
RIPRRTPASP	10	Unmodified	_RIPRRTPASP_					0	0	0		ENST00000342963.2_1_7:5459979-5460210:+|nuORF	ENST00000342963.2_1_7:5459979-5460210:+|nuORF	ENST00000342963.2_1_7:5459979-5460210:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8421630859375	2	575.843813	1149.67307	-4.018	-0.0023138	2.8816	0.0016594	-1.1364	-0.0006544	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.78463	1	12038	12038		20.947	0.95016	1	445630			48549	10586	40275	40302	52091	52091					0.10422436476960684
RIPVLLSE	8	Unmodified	_RIPVLLSE_					0	0	0		TTBK1|p.T1065R|1|0.21|ENSG00000146216|chr6:43283934-43283934|C/G|missense_variant;ENSG00000146216|ENST00000259750|TTBK1	TTBK1|p.T1065R|1|0.21|ENSG00000146216|chr6:43283934-43283934|C/G|missense_variant	TTBK1|p.T1065R|1|0.21|ENSG00000146216|chr6:43283934-43283934|C/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	463.7978820800781	2	463.78711	925.559667	-0.20686	-9.594E-05	0.37252	0.00017277	0.16566	7.683E-05	463.7870245726186	70.075	1.1992	67.504	66.915	68.114	-2.5707					46	23	3	0	0	0	0.028476	1	5661	5661		38.806	0	1	140190			48550	5273	40276	40303	52092	52092					0.0939094831123839
RIPVLLSE	8	Unmodified	_RIPVLLSE_					0	0	0		TTBK1|p.T1065R|1|0.21|ENSG00000146216|chr6:43283934-43283934|C/G|missense_variant;ENSG00000146216|ENST00000259750|TTBK1	TTBK1|p.T1065R|1|0.21|ENSG00000146216|chr6:43283934-43283934|C/G|missense_variant	TTBK1|p.T1065R|1|0.21|ENSG00000146216|chr6:43283934-43283934|C/G|missense_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	463.78711	925.559667	-1.0818	-0.0005017	1.1071	0.00051344	0.025297	1.1732E-05	463.78743572154355	70.967	1.2127	67.511	67.057	68.27	-3.4563	0.0034432	0.00028783	NaN	38.806	57	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	526690			48551	5273	40276	40303							0.0939094831123839
RIQKHFIIS	9	Unmodified	_RIQKHFIIS_					0	0	0			REV__nc|ENSG00000138443|Q9NYB9-3|ABI2	REV__nc|ENSG00000138443|Q9NYB9-3|ABI2	MULTI-MSMS	OvCa99_classI_Rep5	1	571.34326171875	2	571.345658	1140.67676	-0.53031	-0.00030299	-4.0216	-0.0022977	-4.5519	-0.0026007	571.3434119951654	35.962	1.1333	35.962	35.707	36.84	0					71	24	5	0	0	0	0.19758	1	1864	1864		76.774	7.9873	1	11647000	+		48552	25838	40277	40304	52093	52093					0.11205106250849894
RIQLLIRG	8	Unmodified	_RIQLLIRG_					0	0	0			REV__chr14:94062621-94065779|133|19.53|0.06|8.3|-|1|TE_info:L1PB1,L1PB1_dup11175,L1,LINE,donor,+,94065779,94071367|DDX24,None|44	REV__chr14:94062621-94065779|133|19.53|0.06|8.3|-|1|TE_info:L1PB1,L1PB1_dup11175,L1,LINE,donor,+,94065779,94071367|DDX24,None|44	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.26055908203125	2	484.821818	967.629084	-0.85595	-0.00041498	0.38427	0.0001863	-0.47168	-0.00022868	484.82179797945304	36.462	0.44946	36.462	36.257	36.707	0					21	9	3	0	0	0	0.028476	1	1896	1896		18.324	0	1	487220	+		48553	15914	40278	40305	52094	52094					0.14397452050650372
RIQNLEAVKIP	11	Unmodified	_RIQNLEAVKIP_					0	0	0		ENST00000432444.1_1_3:14166529-14170388:+|nuORF	ENST00000432444.1_1_3:14166529-14170388:+|nuORF	ENST00000432444.1_1_3:14166529-14170388:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	640.8904418945312	2	640.887887	1279.76122	-0.17161	-0.00010998	3.4108	0.002186	3.2392	0.002076	640.8899625944715	132.12	1.093	131	130.64	131.73	-1.1249					68	21	4	0	0	0	0.71321	1	10563	10563		25.126	4.2888	1	271940			48554	11811	40279	40306	52095	52095					0.13253012276936715
RIQRRTGGL	9	Unmodified	_RIQRRTGGL_					0	0	0		ENST00000525288.5_3_19:37314612-37328945:-|nuORF	ENST00000525288.5_3_19:37314612-37328945:-|nuORF	ENST00000525288.5_3_19:37314612-37328945:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.314453125	2	528.822881	1055.63121	-0.9658	-0.00051074	-3.2519	-0.0017197	-4.2177	-0.0022304	528.8210701493393	74.689	0.96491	71.458	71.047	72.012	-3.2308					47	19	3	0	0	0	0.027462	1	5913	5913		12.207	0	1	974760			48555	13186	40280	40307	52096	52096					0.10561880788486633
RIQYISIT	8	Unmodified	_RIQYISIT_					0	0	0			REV__tr|A0A7D7A128|A0A7D7A128_9CLOTDUF2238domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13675PE=4SV=1	REV__tr|A0A7D7A128|A0A7D7A128_9CLOTDUF2238domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13675PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	497.2929382324219	2	497.290017	992.565481	1.8975	0.00094361	3.5261	0.0017535	5.4237	0.0026971	497.29147893825154	112.86	0.54134	112.86	112.61	113.15	0					25	11	3	0	0	0	0.67745	1	12860	12860		47.916	0	1	369270	+		48556	32467	40281	40308	52097	52097					0.06890046822900331
RIRATPRR	8	Unmodified	_RIRATPRR_					0	0	0		ENST00000224949.8_1_10:3207443-3207503:-|nuORF	ENST00000224949.8_1_10:3207443-3207503:-|nuORF	ENST00000224949.8_1_10:3207443-3207503:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	513.824462890625	2	513.325591	1024.63663	1.1851	0.00060836	-2.0875	-0.0010716	-0.90239	-0.00046322	513.8246530993847	67.449	2.102	64.562	64.137	66.239	-2.8873					146	41	6	0	0	0	0.75241	1	2831	2831		25.45	0	1	2025700			48557	9704	40282	40309	52098	52098					0.12529604370934067
RIREFGVY	8	Unmodified	_RIREFGVY_					0	0	0		tr|A0A553SGQ6|A0A553SGQ6_NIACIGMPsynthase[glutamine-hydrolyzing]OS=NialliacirculansOX=1397GN=guaAPE=3SV=1	tr|A0A553SGQ6|A0A553SGQ6_NIACIGMPsynthase[glutamine-hydrolyzing]OS=NialliacirculansOX=1397GN=guaAPE=3SV=1	tr|A0A553SGQ6|A0A553SGQ6_NIACIGMPsynthase[glutamine-hydrolyzing]OS=NialliacirculansOX=1397GN=guaAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.8134765625	2	520.287808	1038.56106	-0.16841	-8.7621E-05	0.48793	0.00025387	0.31953	0.00016625	520.7900589171245	74.047	0.89366	72.076	71.745	72.639	-1.9711					35	16	3	0	0	0	0.028476	1	6085	6085		12.959	0	1	20067			48558	33181	40283	40310	52099	52099					0.043325824000021385
RIRFSVKATSG	11	Unmodified	_RIRFSVKATSG_					0	0	0		tr|A0A553SNS6|A0A553SNS6_NIACIalpha-L-rhamnosidaseOS=NialliacirculansOX=1397GN=CEQ21_24995PE=4SV=1	tr|A0A553SNS6|A0A553SNS6_NIACIalpha-L-rhamnosidaseOS=NialliacirculansOX=1397GN=CEQ21_24995PE=4SV=1	tr|A0A553SNS6|A0A553SNS6_NIACIalpha-L-rhamnosidaseOS=NialliacirculansOX=1397GN=CEQ21_24995PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3558349609375	2	611.356754	1220.69895	-3.1571	-0.0019301	2.0725	0.001267	-1.0847	-0.00066312	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.67529	1	12774	12774		37.812	11.015	1	666990			48559	33955	40284	40311	52100	52100					0.09743285928584555
RIRGRKATLD	10	Unmodified	_RIRGRKATLD_					0	0	0		ENSG00000108840|ENST00000682912|HDAC5;nc|ENSG00000108840|Q9UQL6-3|HDAC5	ENSG00000108840|ENST00000682912|HDAC5	ENSG00000108840|ENST00000682912|HDAC5	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.304443359375	2	593.36237	1184.71019	-0.179	-0.00010621	3.1404	0.0018634	2.9614	0.0017572	593.3641081451643	68.542	0.66303	68.542	68.356	69.019	0					28	15	3	0	0	0	0.026968	1	6511	6511		36.447	16.45	1	787720			48560	2681	40285	40312	52101	52101					0.1252210802274476
RIRGRRASYS	10	Unmodified	_RIRGRRASYS_					0	0	0			REV__FAM47B|p.Q542R|1|0.08|ENSG00000189132|chrX:34944456-34944456|A/G|missense_variant	REV__FAM47B|p.Q542R|1|0.08|ENSG00000189132|chrX:34944456-34944456|A/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	611.3513793945312	2	611.349794	1220.68504	0.023819	1.4562E-05	2.1061	0.0012876	2.1299	0.0013021	611.3510154511714	125.27	1.2863	125.03	124.66	125.95	-0.2359					68	25	4	0	0	0	0.73378	1	12215	12215		26.693	2.1737	1	393690	+		48561	28127	40286	40313	52102	52102					0.08352053220164635
RIRIPEPWI	9	Unmodified	_RIRIPEPWI_					0	0	0		ENSG00000204713|ENST00000377199|TRIM27;nc|ENSG00000204713|P14373-2|TRIM27;ENST00000481474.5_1_6:28876558-28891553:-|nuORF;TRIM27|p.Y342Tfs*34|1|0.47|ENSG00000204713|chr6:28904588-28904588|A/-|frameshift_variant	ENSG00000204713|ENST00000377199|TRIM27	ENSG00000204713|ENST00000377199|TRIM27	MULTI-MSMS	OvCa99_classI_Rep5	1	590.3550415039062	2	590.353483	1178.69241	-1.2722	-0.00075107	-0.32826	-0.00019379	-1.6005	-0.00094486	590.3530908336397	104.43	1.1976	104.43	103.98	105.18	0					67	27	4	0	0	0	0.21231	1	11695	11695		74.255	13.283	1	3078400			48562	9026	40287	40314	52103	52103					0.11021392767884208
RIRPKLKWD	9	Unmodified	_RIRPKLKWD_					0	0	0		ENSG00000101327|ENST00000217305|PDYN	ENSG00000101327|ENST00000217305|PDYN	ENSG00000101327|ENST00000217305|PDYN	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3692016601562	2	606.372207	1210.72986	-2.264	-0.0013728	-2.13	-0.0012916	-4.394	-0.0026644	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.69123	1	12405	12405		20.947	0.95016	1	205770			48563	2164	40288	40315	52104	52104					0.132924840334681
RIRPTAVTL	9	Unmodified	_RIRPTAVTL_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MSMS	OvCa9_classI_Rep2	2	513.8237915039062	2	513.824558	1025.63456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.048	1	64.387	63.887	64.887	-2.661								0	0	0	0.16939	1	5223	5223		52.937	3.4952	1				48564	2033	40289	40316	52105	52105					0.12277130842448969
RIRPTAVTL	9	Unmodified	_RIRPTAVTL_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.8255004882812	2	513.824558	1025.63456	0.64137	0.00032955	-0.47795	-0.00024558	0.16342	8.3967E-05	513.8244834183118	68.041	1.9125	64.55	64.087	66	-3.4902					122	38	5	0	0	0	0.44568	1	5020	5020		47.657	9.8458	1	2120800			48565	2033	40289	40316	52106	52106					0.12277130842448969
RIRQEQKL	8	Unmodified	_RIRQEQKL_					0	0	0			REV__nc|ENSG00000180376|A2RUB6-3|CCDC66	REV__nc|ENSG00000180376|A2RUB6-3|CCDC66	MSMS	OvCa99_classI_Rep5	1	535.827392578125	2	535.825089	1069.63563	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.265	1	77.265	76.765	77.765	0								0	0	0	0.30129	1	7784	7784		74.255	16.444	1		+		48566	22171	40290	40317	52107	52107					0.10359345211372784
RIRQGIEK	8	Unmodified	_RIRQGIEK_					0	0	0			REV__nc|ENSG00000103056|Q9NY59-2|SMPD3	REV__nc|ENSG00000103056|Q9NY59-2|SMPD3	MULTI-MSMS	OvCa9_classI_Rep2	2	500.3048095703125	2	500.306532	998.598512	1.8295	0.00091529	-2.0216	-0.0010114	-0.1921	-9.611E-05	500.3053685545666	27.721	1.1711	25.012	24.828	25.999	-2.7097					57	25	3	0	0	0	0.73938	1	545	545		31.955	0	1	318060	+		48567	17594	40291	40318	52108	52108					0.09915673665602753
RIRRDLQRLLF	11	Unmodified	_RIRRDLQRLLF_					0	0	0			REV__ENST00000381685.9_1_2:10747351-10747414:-|nuORF	REV__ENST00000381685.9_1_2:10747351-10747414:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.2591552734375	3	495.975676	1484.9052	-1.6537	-0.00082018	-0.14407	-7.1457E-05	-1.7978	-0.00089164	495.9755200023927	49.072	0.62825	45.93	45.623	46.251	-3.1416					23	11	3	0	0	0	0.026448	1	2721	2721		9.2118	2.8909	1	26842	+		48568	25204	40292	40319	52109	52109					0.18214278827713315
RIRRKFWREWH	11	Unmodified	_RIRRKFWREWH_					0	0	0		FAXC|p.P332R|1|0.05|ENSG00000146267|chr6:99281399-99281399|G/C|missense_variant	FAXC|p.P332R|1|0.05|ENSG00000146267|chr6:99281399-99281399|G/C|missense_variant	FAXC|p.P332R|1|0.05|ENSG00000146267|chr6:99281399-99281399|G/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.8464965820312	3	557.314803	1668.92258	-0.15728	-8.7656E-05	3.8017	0.0021188	3.6445	0.0020311	557.3165484523493	54.814	0.55939	54.814	54.505	55.064	0					21	12	3	0	0	0	0.02656	1	4423	4423		1.3219	1.3219	1	194230			48569	14325	40293	40320	52110	52110					0.1148761915335399
RIRRKFWREWH	11	Unmodified	_RIRRKFWREWH_					0	0	0		FAXC|p.P332R|1|0.05|ENSG00000146267|chr6:99281399-99281399|G/C|missense_variant	FAXC|p.P332R|1|0.05|ENSG00000146267|chr6:99281399-99281399|G/C|missense_variant	FAXC|p.P332R|1|0.05|ENSG00000146267|chr6:99281399-99281399|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.3196411132812	3	557.314803	1668.92258	0.6271	0.00034949	3.8827	0.0021639	4.5098	0.0025134	557.316948795258	59.007	1.2442	55.615	55.249	56.494	-3.392					81	24	5	0	0	0	0.72582	1	3923	3923		3.2113	2.8991	1	752880			48570	14325	40293	40320	52111	52111					0.1148761915335399
RIRSGSSPLS	10	Unmodified	_RIRSGSSPLS_					0	0	0			REV__ENST00000531089.5_1_8:11710176-11725551:-|nuORF	REV__ENST00000531089.5_1_8:11710176-11725551:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	530.2978515625	2	530.298904	1058.58326	-0.044695	-2.3702E-05	-0.23688	-0.00012562	-0.28157	-0.00014932	530.2986629314781	30.396	1.3311	27.686	27.458	28.789	-2.7097					67	26	4	0	0	0	0.58067	1	825	825		44.377	1.5129	1	398640	+		48571	27211	40294	40321	52112	52112					0.05630762077748841
RIRSILRS	8	Unmodified	_RIRSILRS_					0	0	0		ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198626|Q92736-2|RYR2;nc|ENSG00000198838|Q15413-2|RYR3;ENSG00000198838|ENST00000634891|RYR3;nc|ENSG00000198838|Q15413-3|RYR3	ENSG00000198626|ENST00000366574|RYR2;nc|ENSG00000198838|Q15413-2|RYR3	nc|ENSG00000198838|Q15413-2|RYR3	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.8253479003906	2	500.82235	999.630147	-0.70232	-0.00035174	4.0643	0.0020355	3.362	0.0016838	500.82426175027206	62.48	3.824	59.023	58.382	62.206	-3.4577					194	78	4	0	0	0	0.61436	1	4407	4407		60.972	5.4677	1	1001200			48572	8886;8837	40295	40322	52113	52113					0.130316664195675
RIRVQAAT	8	Unmodified	_RIRVQAAT_					0	0	0			REV__ENST00000502430.2_1_14:31889966-31890053:+|nuORF	REV__ENST00000502430.2_1_14:31889966-31890053:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.22454833984375	2	457.780151	913.545748	-0.37166	-0.00017014	-0.14591	-6.6795E-05	-0.51757	-0.00023693	457.78009861216543	29.275	0.24989	29.275	29.137	29.387	0					7	4	2	0	0	0	0.028476	1	1040	1040		13.775	0	1	28190	+		48573	26824	40296	40323	52114	52114					0.08551715602800414
RIRVVPIVL	9	Unmodified	_RIRVVPIVL_					0	0	0			REV__tr|A0A553SP14|A0A553SP14_NIACIFlagellarbiosynthesisproteinFlhAOS=NialliacirculansOX=1397GN=flhAPE=3SV=1	REV__tr|A0A553SP14|A0A553SP14_NIACIFlagellarbiosynthesisproteinFlhAOS=NialliacirculansOX=1397GN=flhAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.7965698242188	2	532.868769	1063.72298	-1.4217	-0.0007576	0.90398	0.0004817	-0.51775	-0.00027589	532.8691583227604	117.16	1.2052	115.8	115.3	116.5	-1.3645					36	22	2	0	0	0	0.027462	1	10907	10907		7.6903	0	1	25174	+		48574	30477	40297	40324	52115	52115					0.19367171152930496
RIRWMRAQSQ	10	Unmodified	_RIRWMRAQSQ_					0	0	0			REV__ENSG00000173389|ENST00000310914|IQCF1	REV__ENSG00000173389|ENST00000310914|IQCF1	MULTI-SECPEP	OvCa9_classI_Rep2	2	444.25140380859375	3	444.575295	1330.70406	1.4731	0.00065491	2.7395	0.0012179	4.2126	0.0018728	444.5766417333801	46.477	0.347	43.767	43.596	43.943	-2.7097					12	6	3	0	0	0	0.027115	1	2794	2794		18.531	9.3192	1	8248.6	+		48575	21768	40298	40325	52116	52116					0.05193266519563622
RIRWWQHNSKK	11	Unmodified	_RIRWWQHNSKK_					0	0	0		sp|P21602|TR14_HCMVAProteinTRL14OS=Humancytomegalovirus(strainAD169)OX=10360PE=3SV=1	sp|P21602|TR14_HCMVAProteinTRL14OS=Humancytomegalovirus(strainAD169)OX=10360PE=3SV=1	sp|P21602|TR14_HCMVAProteinTRL14OS=Humancytomegalovirus(strainAD169)OX=10360PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	513.6213989257812	3	513.619892	1537.83785	1.1592	0.00059538	3.843	0.0019739	5.0022	0.0025692	513.6218443978763	65.542	1.7967	62.846	62.417	64.213	-2.6958					123	35	5	0	0	0	0.72548	1	5058	5058		9.2118	0.41249	1	1337600			48576	32907	40299	40326	52117	52117					0.09044248616760342
RISASILDL	9	Unmodified	_RISASILDL_					0	0	0		ENSG00000016602|ENST00000370563|CLCA4	ENSG00000016602|ENST00000370563|CLCA4	ENSG00000016602|ENST00000370563|CLCA4	MULTI-MSMS	OvCa9_classI_Rep3	3	494.295166015625	2	494.295299	986.576045	-1.1483	-0.00056758	0.076684	3.7905E-05	-1.0716	-0.00052968	494.2953202394874	91.548	1.6915	89.524	88.624	90.315	-2.0241					95	33	4	0	0	0	0.3076	1	5758	5758		62.107	3.3255	1	2048800			48577	1007	40300	40327	52118	52118					0.08222029477337855
RISEPYLI	8	Unmodified	_RISEPYLI_					0	0	0		tr|A0A553SI08|A0A553SI08_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_13860PE=3SV=1	tr|A0A553SI08|A0A553SI08_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_13860PE=3SV=1	tr|A0A553SI08|A0A553SI08_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_13860PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	495.78558349609375	2	495.784567	989.554582	1.8631	0.00092369	0.26021	0.00012901	2.1233	0.0010527	495.7845117559012	102.17	1.0266	102.17	101.82	102.85	0					46	23	3	0	0	0	0.37872	1	11376	11376		92.191	6.8311	1	2445100			48578	33334	40301	40328	52119	52119					0.059386444485994616
RISLPLPNF	9	Unmodified	_RISLPLPNF_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|2|fusion;ENST00000469543.5_1_10:17277782-17277908:+|nuORF;PPFIBP1-VIM|1|fusion	ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|1|fusion	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa99_classI_Rep5	1	528.8142700195312	2	528.813659	1055.61277	1.6358	0.00086502	0.12782	6.759E-05	1.7636	0.00093261	528.8138016565096	127.83	3.2574	127.83	127.27	130.53	0					192	69	5	0	0	0	0.20111	2	14812	14788;14812		76.17	23.081	1	11008000			48579	1049;15514	40302	40329	52120;52121	52121					0.08718326093890028
RISNLVKLE	9	Unmodified	_RISNLVKLE_					0	0	0		tr|A0A553STJ6|A0A553STJ6_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04990PE=4SV=1	tr|A0A553STJ6|A0A553STJ6_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04990PE=4SV=1	tr|A0A553STJ6|A0A553STJ6_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04990PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.798095703125	2	536.329673	1070.64479	-0.91409	-0.00049025	-1.4529	-0.00077921	-2.367	-0.0012695	536.328456080194	106.74	1.9352	106.43	105.33	107.26	-0.30836					60	38	3	0	0	0	0.02715	1	10006	10006		90.601	12.337	1	52110			48580	34497	40303	40330	52122	52122					0.11229693777045213
RISNLVKLE	9	Unmodified	_RISNLVKLE_					0	0	0		tr|A0A553STJ6|A0A553STJ6_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04990PE=4SV=1	tr|A0A553STJ6|A0A553STJ6_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04990PE=4SV=1	tr|A0A553STJ6|A0A553STJ6_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04990PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	536.329673	1070.64479	1.2754	0.00068402	-2.049	-0.0010989	-0.77363	-0.00041492	536.3284910132229	107.76	0.73934	106.56	106.27	107.01	-1.1978	0.0059439	-0.00080392	NaN	90.601	23	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42027			48581	34497	40303	40330							0.11229693777045213
RISNLVKLE	9	Unmodified	_RISNLVKLE_					0	0	0		tr|A0A553STJ6|A0A553STJ6_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04990PE=4SV=1	tr|A0A553STJ6|A0A553STJ6_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04990PE=4SV=1	tr|A0A553STJ6|A0A553STJ6_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_04990PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	536.329673	1070.64479	-2.8575	-0.0015326	1.686	0.00090425	-1.1716	-0.00062834	536.3305178018277	108.4	0.91124	106.67	106.32	107.23	-1.7256	0.11998	0.0032025	NaN	90.601	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32997			48582	34497	40303	40330							0.11229693777045213
RISPANTLLMV	11	Unmodified	_RISPANTLLMV_					0	0	0			REV__tr|A0A553SHD5|A0A553SHD5_NIACILysine--tRNAligaseOS=NialliacirculansOX=1397GN=lysSPE=3SV=1	REV__tr|A0A553SHD5|A0A553SHD5_NIACILysine--tRNAligaseOS=NialliacirculansOX=1397GN=lysSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	607.8488159179688	2	607.849916	1213.68528	-0.23333	-0.00014183	-3.0052	-0.0018267	-3.2385	-0.0019685	607.8480930303093	69.995	2.4296	66.514	66.201	68.631	-3.4812					153	49	5	0	0	0	0.41398	1	5312	5312		60.118	7.0293	1	2991700	+		48583	29792	40304	40331	52123	52123					0.0869829210514581
RISRKESQSL	10	Unmodified	_RISRKESQSL_					0	0	0			REV__L1PA2_dup23|chr1:43114528-43120516:-|1.3533449411662286|0.3152228216366226|2.1|404.0|292|2|anti-sense	REV__L1PA2_dup23|chr1:43114528-43120516:-|1.3533449411662286|0.3152228216366226|2.1|404.0|292|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	401.8998107910156	3	401.898321	1202.67313	0.43726	0.00017574	3.2457	0.0013044	3.683	0.0014802	401.8994230610732	50.361	1.934	47.567	46.686	48.62	-2.794					100	38	5	0	0	0	0.52162	1	3246	3246		51.528	0	1	232540	+		48584	28480	40305	40332	52124	52124					0.07990391686325893
RISRTALKV	9	Unmodified	_RISRTALKV_					0	0	0		ENST00000513016.5_1_5:82833131-82833188:+|nuORF	ENST00000513016.5_1_5:82833131-82833188:+|nuORF	ENST00000513016.5_1_5:82833131-82833188:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	522.3386840820312	2	522.337833	1042.66111	-1.0061	-0.0005255	0.64244	0.00033557	-0.36361	-0.00018993	522.3380222590567	35.222	0.7967	35.222	34.864	35.661	0					27	16	3	0	0	0	0.40667	1	1766	1766		51.335	8.9393	1	249760			48585	13002	40306	40333	52125	52125					0.14148819733782148
RISSFFVAR	9	Unmodified	_RISSFFVAR_					0	0	0			REV__L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|201|1|anti-sense	REV__L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|201|1|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	541.8067016601562	2	541.808908	1081.60326	-0.63019	-0.00034144	-3.2047	-0.0017363	-3.8349	-0.0020778	541.8070344696465	42.376	1.0759	42.376	42.024	43.1	0					52	24	4	0	0	0	0.3249	1	2704	2704		60.118	2.307	1	1695000	+		48586	28568	40307	40334	52126	52126					0.06572557808362944
RISVIKSVF	9	Unmodified	_RISVIKSVF_					0	0	0		ENSG00000176208|ENST00000321990|ATAD5	ENSG00000176208|ENST00000321990|ATAD5	ENSG00000176208|ENST00000321990|ATAD5	MULTI-MSMS	OvCa9_classI_Rep2	2	524.82666015625	2	524.829309	1047.64407	-4.3888	-0.0023034	0.2202	0.00011557	-4.1686	-0.0021878	524.8292785030237	156.45	1.4045	156.23	155.89	157.3	-0.22696					98	36	4	0	0	0	0.59983	1	15956	15956		31.955	1.4512	1	556080			48587	7591	40308	40335	52127	52127					0.12214899127980061
RISVQLDSH	9	Unmodified	_RISVQLDSH_					0	0	0		ENSG00000155816|ENST00000319653|FMN2	ENSG00000155816|ENST00000319653|FMN2	ENSG00000155816|ENST00000319653|FMN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.7855224609375	2	527.78563	1053.55671	-2.5293	-0.0013349	1.988	0.0010492	-0.54128	-0.00028568	527.7867534632879	50.014	1.1966	46.872	46.455	47.651	-3.1416					46	22	4	0	0	0	0.38969	1	2866	2866		52.937	5.2794	1	329320			48588	5802	40309	40336	52128	52128					0.03207073186422349
RISVYYNE	8	Unmodified	_RISVYYNE_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000101162|ENST00000217133|TUBB1;CON__ENSEMBL:ENSBTAP00000025008;chr6:30722645-30723493|286|444.15|0.44|9.97|+|2|TUBB,None|1;ENST00000554927.1_1_16:89989809-89999206:+|nuORF;TUBB1|p.E157Rfs*38|1|0.12|ENSG00000101162|chr20:59023895-59023896|-/C|frameshift_variant;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.2615966796875	2	522.261456	1042.50836	-1.1141	-0.00058187	1.0821	0.00056512	-0.032073	-1.6751E-05	522.2617784772156	99.377	2.0571	97.052	96.536	98.593	-2.3253					99	39	4	0	0	0	0.67872	1	8874	8874		47.657	8.4045	1	271130			48589	9485;8579	40310	40337	52129	52129					-0.011194204534831442
RITAAQHSV	9	Unmodified	_RITAAQHSV_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MSMS	OvCa99_classI_Rep5	1	491.77484130859375	2	491.775065	981.535577	-0.87217	-0.00042891	-0.0016968	-8.3446E-07	-0.87387	-0.00042975	491.77507441374826	33.943	1.9814	33.943	33.632	35.614	0					89	41	6	0	0	0	0.12515	1	1588	1588		90.37	19.074	1	6425600			48590	1504	40311	40338	52130	52130					0.04407107877557337
RITEIKKSD	9	Unmodified	_RITEIKKSD_					0	0	0			REV__tr|A0A553SU85|A0A553SU85_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_06535PE=3SV=1	REV__tr|A0A553SU85|A0A553SU85_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_06535PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3172607421875	2	545.316763	1088.61897	-2.8527	-0.0015556	2.7212	0.0014839	-0.13151	-7.1714E-05	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.62335	1	11886	11886		29.17	3.596	1	337600	+		48591	31050	40312	40339	52131	52131					0.07820799534761136
RITIIRDGT	9	Unmodified	_RITIIRDGT_					0	0	0			REV__nc|ENSG00000132466|O75179-2|ANKRD17	REV__nc|ENSG00000132466|O75179-2|ANKRD17	MULTI-MSMS	OvCa9_classI_Rep2	2	522.8114013671875	2	522.811648	1043.60874	-3.2639	-0.0017064	2.8182	0.0014734	-0.44562	-0.00023298	522.8130718441414	152.23	1.0358	152.01	151.65	152.69	-0.22696					50	20	4	0	0	0	0.63422	1	15465	15465		27.882	1.1893	1	119960	+		48592	19080	40313	40340	52132	52132					0.08868236600187629
RITKLVLGSH	10	Unmodified	_RITKLVLGSH_					0	0	0			REV__ENSG00000166035|ENST00000299022|LIPC	REV__ENSG00000166035|ENST00000299022|LIPC	MULTI-MSMS	OvCa99_classI_Rep5	1	562.3517456054688	2	562.35094	1122.68733	1.6192	0.00091056	0.34533	0.0001942	1.9645	0.0011048	562.3509134216674	81.523	1.616	81.523	81.12	82.736	0					96	38	4	0	0	0	0.32926	1	8404	8404		77.318	0.54344	1	4307300	+		48593	21151	40314	40341	52133	52133					0.13089088905280732
RITKSTKIK	9	Unmodified	_RITKSTKIK_					0	0	0			REV__tr|A0A7D6VR59|A0A7D6VR59_9CLOTCarbohydratekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18105PE=4SV=1	REV__tr|A0A7D6VR59|A0A7D6VR59_9CLOTCarbohydratekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18105PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	537.8535766601562	2	537.853316	1073.69208	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.09	1	27.09	26.59	27.59	0								0	0	0	0.25578	1	767	767		17.365	1.7232	1		+		48594	31390	40315	40342	52134	52134					0.15817973048024214
RITLHHGLN	9	Unmodified	_RITLHHGLN_					0	0	0		ENSG00000133962|ENST00000256343|CATSPERB	ENSG00000133962|ENST00000256343|CATSPERB	ENSG00000133962|ENST00000256343|CATSPERB	MULTI-SECPEP	OvCa9_classI_Rep3	3	530.2786865234375	2	530.804157	1059.59376	-0.92176	-0.00048928	3.5494	0.001884	2.6276	0.0013948	530.8059047491281	93.62	2.5678	91.658	90.981	93.549	-1.9617					78	50	3	0	0	0	0.027461	1	6146	6146		49.442	6.9671	1	271350			48595	4245	40316	40343	52135	52135					0.0663478952285459
RITLLRGNHES	11	Unmodified	_RITLLRGNHES_					0	0	0		nc|ENSG00000119414|O00743-2|PPP6C;ENSG00000119414|ENST00000373547|PPP6C;nc|ENSG00000119414|O00743-3|PPP6C;PPP6C|p.S197Qfs*34|2|0.15|ENSG00000119414|chr9:125153613-125153613|A/-|frameshift_variant	nc|ENSG00000119414|O00743-2|PPP6C	nc|ENSG00000119414|O00743-2|PPP6C	MULTI-SECPEP	OvCa9_classI_Rep4_	4	432.271240234375	3	432.57747	1294.71058	0.7412	0.00032063	3.5424	0.0015324	4.2836	0.001853	432.91336417382956	76.185	0.19031	73.246	73.128	73.318	-2.9389					5	3	2	0	0	0	0.026042	1	6029	6029		20.03	0	1	4696.2			48596	3362	40317	40344	52136	52136					0.07501482951943217
RITSENKTL	9	Unmodified	_RITSENKTL_					0	0	0		ENST00000360689.9_1_14:66210416-66210494:+|nuORF	ENST00000360689.9_1_14:66210416-66210494:+|nuORF	ENST00000360689.9_1_14:66210416-66210494:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	531.3027954101562	2	531.301113	1060.58767	1.5211	0.00080816	1.9445	0.0010331	3.4656	0.0018413	531.3020896930936	122.17	1.3111	121.14	120.8	122.11	-1.0286					58	24	4	0	0	0	0.24951	1	9383	9383		68.787	6.6794	1	266520			48597	10781	40318	40345	52137	52137					0.0598022650067378
RIVHPMLI	8	Unmodified	_RIVHPMLI_					0	0	0			REV__tr|A0A553SJ15|A0A553SJ15_NIACIAldehyde-alcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_15865PE=3SV=1	REV__tr|A0A553SJ15|A0A553SJ15_NIACIAldehyde-alcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_15865PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	489.7995910644531	2	489.799497	977.584442	0.35762	0.00017516	-0.64871	-0.00031774	-0.29109	-0.00014258	489.79900077673824	160.64	3.1469	160.64	159.38	162.53	0					149	62	3	0	0	0	0.73288	2	18992	18992;19015		35.201	1.6851	1	288360	+		48598	29955	40319	40346	52138;52139	52138					0.09475304912950833
RIVIGNLPD	9	Unmodified	_RIVIGNLPD_					0	0	0		sp|P16729|MCP_HCMVAMajorcapsidproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=MCPPE=1SV=1;sp|F5HGT1|MCP_HCMVMMajorcapsidproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=MCPPE=3SV=1	sp|P16729|MCP_HCMVAMajorcapsidproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=MCPPE=1SV=1	sp|P16729|MCP_HCMVAMajorcapsidproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=MCPPE=1SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.33331298828125	2	498.795466	995.57638	0.21412	0.0001068	1.8307	0.00091315	2.0448	0.00102	498.79639559895674	124.84	0.44376	124.61	124.37	124.81	-0.2359					13	8	2	0	0	0	0.027462	1	12133	12133		17.365	7.6593	1	8447.2			48599	32876	40320	40347	52140	52140					0.07841449197167094
RIVIVLPVCLM	11	Unmodified	_RIVIVLPVCLM_					0	0	0			REV__ENSG00000131389|ENST00000622186|SLC6A6	REV__ENSG00000131389|ENST00000622186|SLC6A6	MULTI-MSMS	OvCa9_classI_Rep3	3	628.3831787109375	2	628.38508	1254.75561	-4.0512	-0.0025457	-0.021252	-1.3354E-05	-4.0724	-0.002559	628.3849132400738	150.53	4.7174	149.58	148	152.71	-0.95647					178	94	2	0	0	0	0.72499	1	12729	12729		15.642	0	1	419100	+		48600	19011	40321	40348	52141	52141					0.13841874169247603
RIVNKTTTL	9	Unmodified	_RIVNKTTTL_					0	0	0		ENSG00000140470|ENST00000268070|ADAMTS17	ENSG00000140470|ENST00000268070|ADAMTS17	ENSG00000140470|ENST00000268070|ADAMTS17	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.7822265625	2	523.321848	1044.62914	-1.1473	-0.0006004	1.0468	0.00054782	-0.10048	-5.2581E-05	523.3222113937856	59.427	0.80122	59.427	59.156	59.957	0					43	20	3	0	0	0	0.027411	1	5105	5105		45.972	8.8131	1	2531300			48601	4844	40322	40349	52142	52142					0.10861407259972111
RIVPIRIVV	9	Unmodified	_RIVPIRIVV_					0	0	0			REV__ENSG00000150893|ENST00000280481|FREM2	REV__ENSG00000150893|ENST00000280481|FREM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.2758178710938	2	532.868769	1063.72298	2.4551	0.0013083	-0.59156	-0.00031522	1.8636	0.00099304	532.8683128492595	95.958	0.50984	95.958	95.743	96.253	0					22	11	3	0	0	0	0.027462	1	10504	10504		16.473	0	1	430270	+		48602	20206	40323	40350	52143	52143					0.19367171152930496
RIVQMEKQL	9	Unmodified	_RIVQMEKQL_					0	0	0			REV__ENSG00000172716|ENST00000685675|SLFN11	REV__ENSG00000172716|ENST00000685675|SLFN11	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.3567504882812	2	572.828983	1143.64341	-0.080573	-4.6154E-05	0.5573	0.00031924	0.47672	0.00027308	573.3303464773627	32.708	0.73298	32.708	32.403	33.136	0					26	14	3	0	0	0	0.02741	1	1427	1427		60.972	18.576	1	158970	+		48603	21720	40324	40351	52144	52144					0.07733736416616921
RIVSWGGAKT	10	Unmodified	_RIVSWGGAKT_					0	0	0			REV__ENST00000360409.7_1_2:206662273-206662375:+|nuORF	REV__ENST00000360409.7_1_2:206662273-206662375:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.8070678710938	2	537.806365	1073.59818	-1.5759	-0.00084753	0.83362	0.00044832	-0.74228	-0.0003992	537.8067572142412	71.044	1.1608	67.588	67.299	68.46	-3.4563					77	23	4	0	0	0	0.45822	1	5427	5427		60.118	7.1816	1	1459500	+		48604	24830	40325	40352	52145	52145					0.0643225394574074
RIVVITPYE	9	Unmodified	_RIVVITPYE_					0	0	0		tr|A0A7D6ZWF2|A0A7D6ZWF2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17600PE=4SV=1	tr|A0A7D6ZWF2|A0A7D6ZWF2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17600PE=4SV=1	tr|A0A7D6ZWF2|A0A7D6ZWF2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17600PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3140869140625	2	545.318774	1088.623	-1.9768	-0.001078	-1.9702	-0.0010744	-3.947	-0.0021524	545.3174971514211	139.12	3.9663	138.06	135.98	139.95	-1.0595					186	80	3	0	0	0	0.67509	1	11583	11583		23.042	0	1	94142			48605	35840	40326	40353	52146	52146					0.08222889028456848
RIWGPSVPNQ	10	Unmodified	_RIWGPSVPNQ_					0	0	0			REV__ENST00000568432.1_1_15:42564304-42565165:-|nuORF	REV__ENST00000568432.1_1_15:42564304-42565165:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	577.307373046875	2	577.309272	1152.60399	-1.4178	-0.00081848	-2.4756	-0.0014292	-3.8934	-0.0022477	577.3077489952981	39.242	0.99163	36.532	36.31	37.302	-2.7097					59	19	4	0	0	0	0.45822	1	1921	1921		60.118	0.18749	1	269270	+		48606	27713	40327	40354	52147	52147					0.03379352457409368
RIWGPSVPNQ	10	Unmodified	_RIWGPSVPNQ_					0	0	0			REV__ENST00000568432.1_1_15:42564304-42565165:-|nuORF	REV__ENST00000568432.1_1_15:42564304-42565165:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	577.3070678710938	2	577.309272	1152.60399	-0.73929	-0.0004268	-3.4198	-0.0019743	-4.1591	-0.0024011	577.3072792887777	39.495	1.5209	36.569	36.296	37.817	-2.9264					91	29	4	0	0	0	0.20836	1	1628	1628		93.143	9.4962	1	892530	+		48607	27713	40327	40354	52148	52148					0.03379352457409368
RIWSTKDFLQR	11	Unmodified	_RIWSTKDFLQR_					0	0	0		ENST00000452475.5_1_7:72986280-72992879:-|nuORF;ENSG00000106638|ENST00000305632|TBL2	ENST00000452475.5_1_7:72986280-72992879:-|nuORF	ENST00000452475.5_1_7:72986280-72992879:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	483.9367980957031	3	483.936887	1448.78883	0.61076	0.00029557	-1.0159	-0.00049162	-0.40512	-0.00019605	483.9363500379811	67.695	1.7974	64.808	64.441	66.239	-2.8873					108	35	5	0	0	0	0.72464	1	2893	2893		20.315	1.3487	1	342710			48608	12054	40328	40355	52149	52149					0.08238915537162939
RIYDGEEKI	9	Unmodified	_RIYDGEEKI_					0	0	0		ENST00000475375.1_1_13:53010343-53024741:-|nuORF;ENSG00000136100|ENST00000378060|VPS36	ENST00000475375.1_1_13:53010343-53024741:-|nuORF	ENST00000475375.1_1_13:53010343-53024741:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	561.7948608398438	2	561.793121	1121.57169	0.16096	9.0427E-05	-0.42316	-0.00023773	-0.26219	-0.0001473	561.7927622909916	54.31	0.89034	54.31	54.089	54.98	0					39	20	3	0	0	0	0.075543	1	4381	4381		104.06	2.4561	1	2139800			48609	4456	40329	40356	52150	52150					0.0157652026375672
RIYFEEQY	8	Unmodified	_RIYFEEQY_					0	0	0			REV__ENSG00000155561|ENST00000285968|NUP205	REV__ENSG00000155561|ENST00000285968|NUP205	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.2979125976562	2	574.274564	1146.53457	-0.063051	-3.6208E-05	3.1648	0.0018175	3.1018	0.0017813	574.2764645422814	57.401	0.69016	57.401	56.918	57.609	0					24	15	3	0	0	0	0.028476	1	4782	4782		40.573	3.4135	1	277050	+		48610	20431	40330	40357	52151	52151					-0.032831512819939235
RIYGESADAVK	11	Unmodified	_RIYGESADAVK_					0	0	0		ENST00000473375.1_1_3:180669142-180671642:+|nuORF;FXR1|p.T411Nfs*4|1|0.24|ENSG00000114416|chr3:180968080-180968081|-/A|frameshift_variant;nc|ENSG00000114416|P51114-3|FXR1;nc|ENSG00000114416|P51114-2|FXR1;ENSG00000114416|ENST00000357559|FXR1	ENST00000473375.1_1_3:180669142-180671642:+|nuORF	ENST00000473375.1_1_3:180669142-180671642:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	604.8191528320312	2	604.817127	1207.6197	-0.047143	-2.8513E-05	-0.20522	-0.00012412	-0.25236	-0.00015263	604.8165736509299	48.437	1.4502	45.329	45.039	46.489	-3.1077					77	27	4	0	0	0	0.24327	1	2667	2667		74.165	15.919	1	364160			48611	3018	40331	40358	52152	52152					0.02419594183766094
RIYGESADAVK	11	Unmodified	_RIYGESADAVK_					0	0	0		ENST00000473375.1_1_3:180669142-180671642:+|nuORF;FXR1|p.T411Nfs*4|1|0.24|ENSG00000114416|chr3:180968080-180968081|-/A|frameshift_variant;nc|ENSG00000114416|P51114-3|FXR1;nc|ENSG00000114416|P51114-2|FXR1;ENSG00000114416|ENST00000357559|FXR1	ENST00000473375.1_1_3:180669142-180671642:+|nuORF	ENST00000473375.1_1_3:180669142-180671642:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	604.817127	1207.6197	-1.1383	-0.00068849	1.1559	0.00069913	0.017595	1.0642E-05	604.8172911983324	48.072	0.79616	45.363	45.083	45.879	-2.7097	0.016721	0.00085691	NaN	74.165	41	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82649			48612	3018	40331	40358							0.02419594183766094
RIYHQFIII	9	Unmodified	_RIYHQFIII_					0	0	0		ENSG00000128833|ENST00000261839|MYO5C	ENSG00000128833|ENST00000261839|MYO5C	ENSG00000128833|ENST00000261839|MYO5C	MULTI-MSMS	OvCa99_classI_Rep5	1	401.5747375488281	3	401.572998	1201.69716	1.6055	0.00064472	0.095526	3.8361E-05	1.701	0.00068308	401.5723791323773	62.911	1.3943	62.911	62.541	63.935	0					76	34	5	0	0	0	0.46377	1	5623	5623		52.937	15.125	1	1459000			48613	3907	40332	40359	52153	52153					0.1043827691066781
RIYIRRTLR	9	Unmodified	_RIYIRRTLR_					0	0	0		ENST00000519559.1_1_8:52732913-52752014:-|nuORF;nc|ENSG00000168300|Q96MG8-2|PCMTD1;ENSG00000168300|ENST00000522514|PCMTD1	ENST00000519559.1_1_8:52732913-52752014:-|nuORF	ENST00000519559.1_1_8:52732913-52752014:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	416.24493408203125	3	416.266679	1245.77821	1.1186	0.00046562	2.9399	0.0012238	4.0585	0.0016894	416.2675773981052	72.456	0.2002	72.456	72.374	72.574	0					6	4	2	0	0	0	0.027455	1	7049	7049		51.528	13.716	1	60208			48614	6890	40333	40360	52154	52154					0.16514977673386966
RIYKDYIRERF	11	Unmodified	_RIYKDYIRERF_					0	0	0		BMP7-DYNC2LI1|1|fusion;ENSG00000101144|ENST00000395863|BMP7	BMP7-DYNC2LI1|1|fusion	BMP7-DYNC2LI1|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.6133422851562	3	520.287808	1557.8416	0.67782	0.00035266	-2.4563	-0.001278	-1.7785	-0.00092534	520.6203621932931	70.275	0.75124	67.555	67.205	67.957	-2.7196					38	14	3	0	0	0	0.026435	1	3194	3194		9.6461	0.43434	1	42832			48615	155	40334	40361	52155	52155					0.08498873599933177
RIYKDYIRERF	11	Unmodified	_RIYKDYIRERF_					0	0	0		BMP7-DYNC2LI1|1|fusion;ENSG00000101144|ENST00000395863|BMP7	BMP7-DYNC2LI1|1|fusion	BMP7-DYNC2LI1|1|fusion	MULTI-MATCH	OvCa99_classI_Rep5	1		3	520.287808	1557.8416	0.1241	6.457E-05	-2.439	-0.001269	-2.3149	-0.0012044	520.2864659509308	67.18	0.46947	67.18	66.939	67.408	0	-0.18738	3.3303E-06	NaN	9.6461	28	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1273700			48616	155	40334	40361							0.08498873599933177
RIYKGVIQAI	10	Unmodified	_RIYKGVIQAI_					0	0	0		nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4;ENSG00000115310|ENST00000337526|RTN4;nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-5|RTN4;RTN4-KIAA0196|2|fusion;RTN4-KIAA0196|1|fusion	nc|ENSG00000115310|Q9NQC3-4|RTN4;RTN4-KIAA0196|2|fusion	nc|ENSG00000115310|Q9NQC3-4|RTN4	MULTI-MSMS	OvCa99_classI_Rep5	1	580.8621215820312	2	580.861141	1159.70773	0.072108	4.1884E-05	0.42709	0.00024808	0.49919	0.00028996	580.8612732647885	74.026	1.165	74.026	73.755	74.92	0					70	29	3	0	0	0	0.50999	1	7290	7290		52.937	1.6012	1	5544800			48617	3085;32793	40335	40362	52156	52156					0.13426259565108012
RIYKYIHKV	9	Unmodified	_RIYKYIHKV_					0	0	0		nc|ENSG00000052802|Q15800-2|MSMO1;ENSG00000052802|ENST00000261507|MSMO1	nc|ENSG00000052802|Q15800-2|MSMO1	nc|ENSG00000052802|Q15800-2|MSMO1	MULTI-MSMS	OvCa99_classI_Rep5	1	407.2483215332031	3	407.248514	1218.72371	0.62801	0.00025576	-0.72392	-0.00029482	-0.095912	-3.906E-05	407.248214565373	39.437	2.0433	39.437	39.196	41.24	0					124	45	5	0	0	0	0.22035	2	2326	2326;2356		72.879	26.971	1	6495400			48618	1195	40336	40363	52157;52158	52157					0.12309965801955514
RIYNSTQI	8	Unmodified	_RIYNSTQI_					0	0	0		tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.7601318359375	2	497.769448	993.524344	0.10735	5.3435E-05	-0.50435	-0.00025105	-0.39701	-0.00019762	497.76893693944123	79.735	0.60561	77.396	77.103	77.709	-2.3399					16	11	2	0	0	0	0.028476	1	4293	4293		33.516	8.0654	1	25821			48619	35500	40337	40364	52159	52159					0.027322857834292336
RIYRLVSKTF	10	Unmodified	_RIYRLVSKTF_					0	0	0		ENST00000344096.3_1_12:68052792-68052999:+|nuORF	ENST00000344096.3_1_12:68052792-68052999:+|nuORF	ENST00000344096.3_1_12:68052792-68052999:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	642.383544921875	2	641.885147	1281.75574	-4.6434	-0.0029805	0.6524	0.00041876	-3.991	-0.0025618	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.86889	1	15744	15744		10.265	0.5596	1	543390			48620	10606	40338	40365	52160	52160					0.12613333485114708
RIYTEIIRI	9	Unmodified	_RIYTEIIRI_					0	0	0		nc|ENSG00000168016|O15050|TRANK1;ENSG00000168016|ENST00000645898|TRANK1;TRANK1|p.K1873Nfs*7|1|0.09|ENSG00000168016|chr3:36833832-36833833|-/A|frameshift_variant;TRANK1|p.A1871Vfs*9|1|0.09|ENSG00000168016|chr3:36833839-36833840|-/A|frameshift_variant;TRANK1|p.N2103Tfs*3|1|0.19|ENSG00000168016|chr3:36833098-36833143|TCAGTCATTATCAAAAAATGATCTTTTGTTTTTTTCTCTCTCAAGT/-|frameshift_variant	nc|ENSG00000168016|O15050|TRANK1	nc|ENSG00000168016|O15050|TRANK1	MULTI-MSMS	OvCa99_classI_Rep5	1	588.8601684570312	2	588.858598	1175.70264	2.0537	0.0012094	0.27504	0.00016196	2.3288	0.0013713	588.8586769481822	92.826	0.66872	92.826	92.594	93.263	0					44	15	4	0	0	0	0.16264	1	10045	10045		82.75	26.317	1	2268500			48621	6864	40339	40366	52161	52161					0.12181955702453706
RKAGIFQSVK	10	Unmodified	_RKAGIFQSVK_					0	0	0		ENSG00000164919|ENST00000520468|COX6C	ENSG00000164919|ENST00000520468|COX6C	ENSG00000164919|ENST00000520468|COX6C	MULTI-MSMS	OvCa99_classI_Rep5	1	567.3427124023438	2	567.343115	1132.67168	-0.49203	-0.00027915	-0.52201	-0.00029616	-1.014	-0.00057531	567.3429440343383	40.059	0.9898	40.059	39.63	40.619	0					46	21	4	0	0	0	0.39718	1	2411	2411		68.846	19.405	1	771440			48622	6500	40340	40367	52162	52162					0.1106480238822769
RKAKKSNPFSI	11	Unmodified	_RKAKKSNPFSI_					0	0	0		ENST00000587506.1_1_19:30528395-30528668:+|nuORF	ENST00000587506.1_1_19:30528395-30528668:+|nuORF	ENST00000587506.1_1_19:30528395-30528668:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	425.9224853515625	3	425.922578	1274.7459	-1.168	-0.0004975	1.3125	0.00055903	0.14448	6.1536E-05	425.92310380992353	54.918	1.5423	52.104	51.772	53.314	-2.8139					82	30	4	0	0	0	0.57194	1	3805	3805		47.228	8.4741	1	427660			48623	14066	40341	40368	52163	52163					0.1195214547976775
RKALNRKTID	10	Unmodified	_RKALNRKTID_					0	0	0		WDR33|p.V52L|1|0.38|ENSG00000136709|chr2:127770828-127770828|C/G|missense_variant	WDR33|p.V52L|1|0.38|ENSG00000136709|chr2:127770828-127770828|C/G|missense_variant	WDR33|p.V52L|1|0.38|ENSG00000136709|chr2:127770828-127770828|C/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.68560791015625	3	405.582444	1213.7255	1.1015	0.00044674	1.7387	0.00070519	2.8402	0.0011519	405.582753581224	71.186	0.2811	71.186	71.068	71.349	0					10	6	2	0	0	0	0.027142	1	6859	6859		27.047	7.0168	1	104960			48624	36305	40342	40369	52164	52164					0.12718974819949835
RKAPSGPR	8	Unmodified	_RKAPSGPR_					0	0	0		nc|ENSG00000162522|Q9P206-3|NHSL3	nc|ENSG00000162522|Q9P206-3|NHSL3	nc|ENSG00000162522|Q9P206-3|NHSL3	MULTI-MSMS	OvCa9_classI_Rep2	2	434.75927734375	2	434.759218	867.503883	-0.54476	-0.00023684	0.73073	0.00031769	0.18597	8.0851E-05	434.7594502813862	138.35	2.0585	138.12	137.54	139.6	-0.22697					104	41	4	0	0	0	0.75241	1	13796	13796		25.45	1.2474	1	279250			48625	15132	40343	40370	52165	52165					0.06483159914284897
RKAQKALGEE	10	Unmodified	_RKAQKALGEE_					0	0	0		tr|A0A553SJU5|A0A553SJU5_NIACITyrosine--tRNAligaseOS=NialliacirculansOX=1397GN=tyrSPE=3SV=1	tr|A0A553SJU5|A0A553SJU5_NIACITyrosine--tRNAligaseOS=NialliacirculansOX=1397GN=tyrSPE=3SV=1	tr|A0A553SJU5|A0A553SJU5_NIACITyrosine--tRNAligaseOS=NialliacirculansOX=1397GN=tyrSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.3211059570312	2	565.319837	1128.62512	0.91166	0.00051538	-1.6755	-0.00094721	-0.76387	-0.00043183	565.3187717498485	62.062	1.6451	58.604	58.336	59.981	-3.4577					104	33	4	0	0	0	0.49558	1	4282	4282		54.776	3.4409	1	975150			48626	33543	40344	40371	52166	52166					0.06595317766300468
RKASFKLRFV	10	Unmodified	_RKASFKLRFV_					0	0	0		ENST00000601372.5_1_19:8935730-8942974:-|nuORF;ENST00000593891.1_1_19:8941870-8942911:-|nuORF;ENST00000596172.1_1_19:8935711-8942974:-|nuORF	ENST00000601372.5_1_19:8935730-8942974:-|nuORF	ENST00000601372.5_1_19:8935730-8942974:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	626.3900756835938	2	626.387857	1250.76116	-5.6586	-0.0035445	4.4262	0.0027725	-1.2324	-0.00077198	626.8920656002647	163.54	1.1058	163.31	162.97	164.08	-0.22697					56	36	2	0	0	0	0.82648	1	16696	16696		15.642	1.5047	1	65883			48627	14159	40345	40372	52167	52167					0.14581057067607617
RKAVIVKNI	9	Unmodified	_RKAVIVKNI_					0	0	0		ENSG00000131469|ENST00000253788|RPL27;RPL27|p.K133*|1|0.17|ENSG00000131469|chr17:43002904-43002905|-/AT|frameshift_variant	ENSG00000131469|ENST00000253788|RPL27	ENSG00000131469|ENST00000253788|RPL27	MULTI-MSMS	OvCa99_classI_Rep5	1	520.8506469726562	2	520.850576	1039.6866	-1.4531	-0.00075687	0.91437	0.00047625	-0.53876	-0.00028061	520.8509007727941	27.951	0.54937	27.951	27.741	28.29	0					23	10	4	0	0	0	0.40667	1	871	871		51.335	1.3109	1	247840			48628	4068	40346	40373	52168	52168					0.16834294256204885
RKAVLHRDKVE	11	Unmodified	_RKAVLHRDKVE_					0	0	0			REV__ENSG00000158669|ENST00000396987|GPAT4	REV__ENSG00000158669|ENST00000396987|GPAT4	MULTI-MSMS	OvCa9_classI_Rep3	3	450.9364318847656	3	450.936999	1349.78917	1.6146	0.00072808	-1.8052	-0.00081405	-0.19064	-8.5968E-05	450.9360997934693	63.19	1.2421	60.156	59.756	60.998	-3.0339					70	24	4	0	0	0	0.72511	1	2360	2360		14.086	0	1	192240	+		48629	20577	40347	40374	52169	52169					0.1282633525700021
RKAVQGVLR	9	Unmodified	_RKAVQGVLR_					0	0	0			REV__tr|A0A7D6ZYJ0|A0A7D6ZYJ0_9CLOTChaperoneproteinDnaKOS=ClostridiumintestinaleOX=36845GN=dnaKPE=2SV=1	REV__tr|A0A7D6ZYJ0|A0A7D6ZYJ0_9CLOTChaperoneproteinDnaKOS=ClostridiumintestinaleOX=36845GN=dnaKPE=2SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	514.2425537109375	2	513.830175	1025.6458	-0.75258	-0.0003867	3.7786	0.0019416	3.026	0.0015549	513.8319502367451	84.94	1.2277	82.72	82.108	83.335	-2.2204					45	24	2	0	0	0	0.027462	1	5030	5030		16.473	0	1	116450	+		48630	32377	40348	40375	52170	52170					0.1339995293658376
RKDLTRVQELL	11	Unmodified	_RKDLTRVQELL_					0	0	0			REV__tr|A0A7D6W411|A0A7D6W411_9CLOTmRNAinterferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02495PE=3SV=1	REV__tr|A0A7D6W411|A0A7D6W411_9CLOTmRNAinterferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02495PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	457.6076354980469	3	457.608659	1369.80415	-3.7463	-0.0017143	2.2282	0.0010197	-1.518	-0.00069467	457.60971240856696	157.06	2.9403	156.83	155.39	158.33	-0.22696					220	89	3	0	0	0	0.72516	1	16033	16033		13.508	1.0751	1	46638	+		48631	31930	40349	40376	52171	52171					0.1340378233435331
RKDQLNPRV	9	Unmodified	_RKDQLNPRV_					0	0	0			REV__SORBS2|p.E881Dfs*37|1|0.67|ENSG00000154556|chr4:185615156-185615156|C/-|frameshift_variant	REV__SORBS2|p.E881Dfs*37|1|0.67|ENSG00000154556|chr4:185615156-185615156|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	563.330322265625	2	563.327996	1124.64144	2.0656	0.0011636	-3.0679	-0.0017282	-1.0023	-0.00056464	563.326162419174	129.89	3.2488	129.89	129.31	132.56	0					173	68	5	0	0	0	0.63422	1	15024	15024		27.882	1.1893	1	5166000	+		48632	20388	40350	40377	52172	52172					0.08410443723028038
RKDVAKIIY	9	Unmodified	_RKDVAKIIY_					0	0	0			REV__ENST00000414667.1_1_Y:2863110-2863236:-|nuORF	REV__ENST00000414667.1_1_Y:2863110-2863236:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.3358764648438	2	553.340041	1104.66553	-4.5455	-0.0025152	0.49685	0.00027493	-4.0487	-0.0022403	553.340345188633	155.45	1.0287	153.96	153.73	154.76	-1.4911					55	29	3	0	0	0	0.67509	1	15432	15432		23.042	1.0826	1	130600	+		48633	25524	40351	40378	52173	52173					0.11738284156717782
RKEFEEAR	8	Unmodified	_RKEFEEAR_					0	0	0		ENSG00000177239|ENST00000371589|MAN1B1	ENSG00000177239|ENST00000371589|MAN1B1	ENSG00000177239|ENST00000371589|MAN1B1	MULTI-MSMS	OvCa99_classI_Rep5	1	532.777587890625	2	532.777805	1063.54106	-0.4741	-0.00025259	0.34858	0.00018572	-0.12552	-6.6874E-05	532.7778134833851	38.418	0.67445	38.418	38.207	38.882	0					29	14	3	0	0	0	0.26545	1	2177	2177		113.41	5.3241	1	964960			48634	7669	40352	40379	52174	52174					0.011827866693693068
RKEGCWPTM	9	Oxidation (M)	_RKEGCWPTM(Oxidation (M))_		RKEGCWPTM(1)		RKEGCWPTM(96)	0	0	1		ENST00000506427.1_1_1:203188790-203188844:-|nuORF	ENST00000506427.1_1_1:203188790-203188844:-|nuORF	ENST00000506427.1_1_1:203188790-203188844:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	562.2583618164062	2	562.254794	1122.49503	3.3665	0.0018928	1.774	0.00099745	5.1405	0.0028903	562.2557164633373	90.084	0.89394	90.084	89.804	90.698	0					59	21	4	0	0	0	0.10363	1	9640	9640		96.19	13.95	1	10462000			48635	12909	40353	40380	52175	52175		343			-0.06131317828749161
RKEGLLRSK	9	Unmodified	_RKEGLLRSK_					0	0	0			REV__ENST00000504999.1_2_4:170927805-170947437:-|nuORF	REV__ENST00000504999.1_2_4:170927805-170947437:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	543.8402099609375	2	543.840739	1085.66693	1.5392	0.00083707	-1.7767	-0.00096622	-0.23749	-0.00012915	543.8395786919444	28.227	0.75276	25.518	25.344	26.096	-2.7097					24	15	2	0	0	0	0.5811	1	574	574		34.173	6.2903	1	48605	+		48636	25285	40354	40381	52176	52176					0.1275191824547619
RKEIEIINAM	10	Unmodified	_RKEIEIINAM_					0	0	0		ENSG00000156787|ENST00000287380|TBC1D31	ENSG00000156787|ENST00000287380|TBC1D31	ENSG00000156787|ENST00000287380|TBC1D31	MULTI-MSMS	OvCa9_classI_Rep2	2	608.8358764648438	2	608.839548	1215.66454	-3.9036	-0.0023766	-0.38806	-0.00023627	-4.2916	-0.0026129	608.8391511731406	151.54	1.2369	151.31	150.94	152.18	-0.22697					74	24	4	0	0	0	0.79213	1	15432	15432		19.997	0.89325	1	158260			48637	5856	40355	40382	52177	52177					0.06533701725470564
RKELQLPLD	9	Unmodified	_RKELQLPLD_					0	0	0		tr|A0A553SH18|A0A553SH18_NIACIGlycosyltransferasefamily4proteinOS=NialliacirculansOX=1397GN=CEQ21_11945PE=4SV=1	tr|A0A553SH18|A0A553SH18_NIACIGlycosyltransferasefamily4proteinOS=NialliacirculansOX=1397GN=CEQ21_11945PE=4SV=1	tr|A0A553SH18|A0A553SH18_NIACIGlycosyltransferasefamily4proteinOS=NialliacirculansOX=1397GN=CEQ21_11945PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.8402709960938	2	556.327131	1110.63971	1.2539	0.0006976	-4.48	-0.0024924	-3.2261	-0.0017948	556.3249057990602	154.59	0.65796	154.59	154.27	154.93	0					15	12	2	0	0	0	0.027462	1	18108	18108		40.778	5.1599	1	23752			48638	33222	40356	40383	52178	52178					0.08881389914427018
RKENDQKK	8	Unmodified	_RKENDQKK_					0	0	0		ENST00000419877.1_1_2:186821421-186821523:-|nuORF	ENST00000419877.1_1_2:186821421-186821523:-|nuORF	ENST00000419877.1_1_2:186821421-186821523:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2698974609375	2	523.291079	1044.56761	-1.1156	-0.00058376	0.86062	0.00045036	-0.25494	-0.00013341	523.2913212312192	25.902	0.24888	25.902	25.743	25.992	0					7	4	2	0	0	0	0.028476	1	612	612		25.45	15.98	1	25001			48639	11661	40357	40384	52179	52179					0.04710475560705163
RKEPKIQSPR	10	Unmodified	_RKEPKIQSPR_					0	0	0		ENSG00000268529.1,CYP2T3P,chr19,+,I2.1,41135584,41136014|70|4.77|2|intron	ENSG00000268529.1,CYP2T3P,chr19,+,I2.1,41135584,41136014|70|4.77|2|intron	ENSG00000268529.1,CYP2T3P,chr19,+,I2.1,41135584,41136014|70|4.77|2|intron	MULTI-MSMS	OvCa9_classI_Rep2	2	619.869873046875	2	619.870028	1237.7255	-3.8587	-0.0023919	2.9348	0.0018192	-0.92393	-0.00057272	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.79213	1	15134	15134		19.997	0.89325	1	492670			48640	9538	40358	40385	52180	52180					0.11614974819917734
RKEQLKEEL	9	Unmodified	_RKEQLKEEL_					0	0	0		ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-4|TAOK2;nc|ENSG00000149930|Q9UL54-3|TAOK2;nc|ENSG00000149930|Q9UL54-2|TAOK2	ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-2|TAOK2	nc|ENSG00000149930|Q9UL54-2|TAOK2	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.8319091796875	2	586.83532	1171.65609	-1.3959	-0.00081919	-0.90215	-0.00052941	-2.2981	-0.0013486	586.8348196312893	145.67	2.8806	144.23	143.04	145.92	-1.4357					88	55	2	0	0	0	0.50149	1	14268	14268		42.396	0.96952	1	38613			48641	5493;15088	40359	40386	52181	52181					0.07712471080549221
RKFDIIRYK	9	Unmodified	_RKFDIIRYK_					0	0	0			REV__tr|A0A7D6VS28|A0A7D6VS28_9CLOTLargeribosomalsubunitproteinuL2OS=ClostridiumintestinaleOX=36845GN=rplBPE=3SV=1	REV__tr|A0A7D6VS28|A0A7D6VS28_9CLOTLargeribosomalsubunitproteinuL2OS=ClostridiumintestinaleOX=36845GN=rplBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8696899414062	2	619.87204	1237.72953	-3.6059	-0.0022352	-0.65337	-0.00040501	-4.2593	-0.0026402	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.56889	1	12690	12690		35.618	5.3006	1	664560	+		48642	31463	40360	40387	52182	52182					0.1201706431365892
RKFFRQIIS	9	Unmodified	_RKFFRQIIS_					0	0	0		nc|ENSG00000174672|Q8IWQ3-6|BRSK2;nc|ENSG00000174672|Q8IWQ3-3|BRSK2;nc|ENSG00000174672|Q8IWQ3-2|BRSK2;nc|ENSG00000174672|Q8IWQ3-4|BRSK2;ENSG00000174672|ENST00000528841|BRSK2;nc|ENSG00000174672|Q8IWQ3-5|BRSK2;BRSK2|p.G392Afs*39|1|0.75|ENSG00000174672|chr11:1445854-1445854|C/-|frameshift_variant	nc|ENSG00000174672|Q8IWQ3-6|BRSK2	nc|ENSG00000174672|Q8IWQ3-6|BRSK2	MULTI-MSMS	OvCa9_classI_Rep2	2	597.856201171875	2	597.858932	1193.70331	-3.1766	-0.0018991	-1.0809	-0.0006462	-4.2574	-0.0025453	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.70177	1	15122	15122		17.365	0.89182	1	436470			48643	7480	40361	40388	52183	52183					0.11420795142203133
RKFLKHHL	8	Unmodified	_RKFLKHHL_					0	0	0		ENSG00000100221|ENST00000683374|JOSD1	ENSG00000100221|ENST00000683374|JOSD1	ENSG00000100221|ENST00000683374|JOSD1	MULTI-MSMS	OvCa99_classI_Rep5	1	539.83349609375	2	539.83526	1077.65597	-0.99253	-0.0005358	-2.4553	-0.0013255	-3.4479	-0.0018613	539.8339858096044	27.666	1.4976	27.666	27.291	28.789	0					65	29	5	0	0	0	0.72922	1	832	832		37.028	0	1	2677600			48644	2028	40362	40389	52184	52184					0.12024560661848227
RKFRLSSARKR	11	Unmodified	_RKFRLSSARKR_					0	0	0			REV__ENSG00000182150|ENST00000653738|ERCC6L2	REV__ENSG00000182150|ENST00000653738|ERCC6L2	MULTI-MSMS	OvCa9_classI_Rep4_	4	468.95953369140625	3	468.960138	1403.85858	-5.0474	-0.002367	3.1302	0.0014679	-1.9173	-0.00089913	468.9614834162015	157.58	3.0388	156.04	155.07	158.11	-1.545					130	85	3	0	0	0	0.72548	1	15515	15515		9.2118	0.41249	1	74235	+		48645	22264	40363	40390	52185	52185					0.17280838996430248
RKFRVVPQ	8	Unmodified	_RKFRVVPQ_					0	0	0			REV__nc|ENSG00000085433|O94967-2|WDR47	REV__nc|ENSG00000085433|O94967-2|WDR47	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7932739257812	2	515.319443	1028.62433	-0.40562	-0.00020903	-1.654	-0.00085236	-2.0597	-0.0010614	515.3184947912551	33.359	0.83475	33.359	32.748	33.583	0					22	16	2	0	0	0	0.028476	1	1542	1542		29.15	1.2673	1	385490	+		48646	28743	40364	40391	52186	52186					0.11116567907879471
RKFSYQPR	8	Unmodified	_RKFSYQPR_					0	0	0		ENST00000418231.2_1_X:73350641-73351442:+|nuORF	ENST00000418231.2_1_X:73350641-73351442:+|nuORF	ENST00000418231.2_1_X:73350641-73351442:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.2966918945312	2	541.298707	1080.58286	-0.76184	-0.00041239	-3.1784	-0.0017205	-3.9403	-0.0021329	541.2968743073858	22.043	1.337	20.704	20.473	21.81	-1.3386					67	32	3	0	0	0	0.75661	1	283	283		19.36	2.8868	1	333050			48647	11633	40365	40392	52187	52187					0.04579387148555725
RKFWEVWAWRL	11	Unmodified	_RKFWEVWAWRL_					0	0	0		ENST00000291560.6_1_21:45077957-45078116:-|nuORF	ENST00000291560.6_1_21:45077957-45078116:-|nuORF	ENST00000291560.6_1_21:45077957-45078116:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	526.2880249023438	3	526.289372	1575.84629	-0.9885	-0.00052024	-2.5156	-0.0013239	-3.5041	-0.0018442	526.2881163228013	28.506	0.59775	28.506	28.29	28.888	0					28	11	3	0	0	0	0.72528	1	935	935		11.932	2.2862	1	607770			48648	10097	40366	40393	52188	52188					0.08139802533401053
RKFYIYTLVVL	11	Unmodified	_RKFYIYTLVVL_					0	0	0			REV__ENSG00000126353|ENST00000246657|CCR7	REV__ENSG00000126353|ENST00000246657|CCR7	MULTI-MSMS	OvCa9_classI_Rep3	3	472.2831115722656	3	472.286746	1413.83841	-6.0447	-0.0028549	-0.27842	-0.00013149	-6.3232	-0.0029863	472.28675973301637	159.08	3.3809	157.81	156.71	160.09	-1.267					177	72	4	0	0	0	0.72507	1	13728	13728		14.694	0.60766	1	110830	+		48649	18780	40367	40394	52189	52189					0.14804230493245996
RKGALLPM	8	Unmodified	_RKGALLPM_					0	0	0		ENST00000409202.7_1_2:68961974-68962073:+|nuORF	ENST00000409202.7_1_2:68961974-68962073:+|nuORF	ENST00000409202.7_1_2:68961974-68962073:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	443.2728576660156	2	443.270573	884.526593	0.83529	0.00037026	3.5014	0.001552	4.3366	0.0019223	443.27205335230417	138.39	1.523	138.16	137.68	139.21	-0.22696					79	30	3	0	0	0	0.74679	1	13787	13787		28.254	1.4582	1	138730			48650	11519	40368	40395	52190	52190					0.07971042987537658
RKGCLLCFV	9	Carbamidomethyl (C)	_RKGC(Carbamidomethyl (C))LLCFV_	RKGC(0.995)LLC(0.005)FV		RKGC(23)LLC(-23)FV		0	1	0			REV__ZBTB16|p.H648Qfs*2|1|0.09|ENSG00000109906|chr11:114250477-114250477|C/-|frameshift_variant	REV__ZBTB16|p.H648Qfs*2|1|0.09|ENSG00000109906|chr11:114250477-114250477|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	548.2949829101562	2	548.293722	1094.57289	-1.4493	-0.00079464	4.468	0.0024498	3.0187	0.0016551	548.2961982412694	34.285	4.3001	31.575	31.119	35.419	-2.7097					197	86	6	0	0	0	0.50066	1	1396	1396		42.474	6.8562	2	2359300	+		48651	17956	40369	40396	52191	52191	198				0.029387398273001963
RKGLLGPPGPK	11	Unmodified	_RKGLLGPPGPK_					0	0	0			REV__ENSG00000197467|ENST00000645393|COL13A1	REV__ENSG00000197467|ENST00000645393|COL13A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.7691040039062	2	560.353483	1118.69241	-0.17153	-9.6115E-05	0.22988	0.00012882	0.058359	3.2702E-05	560.3535203429349	59.364	0.26589	59.364	59.228	59.494	0					10	6	2	0	0	0	0.025861	1	5114	5114		37.812	4.9991	1	287950	+		48652	22927	40370	40397	52192	52192					0.13781392767873513
RKGMKEPTK	9	Unmodified	_RKGMKEPTK_					0	0	0		nc|ENSG00000189157|Q6ZV65-1|FAM47E;ENSG00000189157|ENST00000424749|FAM47E;ENST00000514365.5_3_4:77172961-77230330:+|nuORF;ENST00000509377.1_3_4:77172961-77230323:+|nuORF;nc|ENSG00000189157|Q6ZV65-2|FAM47E	nc|ENSG00000189157|Q6ZV65-1|FAM47E	nc|ENSG00000189157|Q6ZV65-1|FAM47E	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.8070678710938	2	537.808051	1073.60155	-1.5759	-0.00084753	-2.3002	-0.0012371	-3.8761	-0.0020846	537.8067572142412	71.044	1.1608	67.588	67.299	68.46	-3.4563					77	23	4	0	0	0	0.50149	1	5416	5416		42.396	1.8235	1	1459500			48653	8541	40371	40398	52193	52193					0.06769180728088031
RKGQWRKKT	9	Unmodified	_RKGQWRKKT_					0	0	0		ENST00000434423.4_1_7:72397419-72400491:+|nuORF	ENST00000434423.4_1_7:72397419-72400491:+|nuORF	ENST00000434423.4_1_7:72397419-72400491:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	594.361083984375	2	594.359631	1186.70471	-0.074076	-4.4028E-05	-0.37709	-0.00022413	-0.45116	-0.00026815	594.3592901809836	30.161	0.44814	30.161	29.935	30.383	0					20	8	3	0	0	0	0.69403	1	1142	1142		19.997	0	1	212160			48654	11843	40372	40399	52194	52194					0.11882429230922753
RKHSKRIRKSS	11	Unmodified	_RKHSKRIRKSS_					0	0	0			REV__ERCC4|p.Y577*|1|0.08|ENSG00000175595|chr16:13935663-13935663|C/-|frameshift_variant	REV__ERCC4|p.Y577*|1|0.08|ENSG00000175595|chr16:13935663-13935663|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	462.2874450683594	3	461.619892	1381.83785	-1.0943	-0.00050515	1.9231	0.00088772	0.82876	0.00038257	461.62078713386376	85.711	1.1134	84.221	83.949	85.062	-1.4906					39	21	2	0	0	0	0.026033	1	7410	7410		28.577	7.5445	1	164100	+		48655	21907	40373	40400	52195	52195					0.16220248616764366
RKHTGIKPFQ	10	Unmodified	_RKHTGIKPFQ_					0	0	0		ENSG00000109787|ENST00000261438|KLF3	ENSG00000109787|ENST00000261438|KLF3	ENSG00000109787|ENST00000261438|KLF3	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.557373046875	3	404.571768	1210.69348	0.47701	0.00019298	0.17842	7.2184E-05	0.65543	0.00026517	404.5718211302829	42.089	0.26057	42.089	41.982	42.242	0					9	5	3	0	0	0	0.02659	1	2669	2669		55.084	0	1	72179			48656	2734	40374	40401	52196	52196					0.09655607136801336
RKIFHLKAKD	10	Unmodified	_RKIFHLKAKD_					0	0	0		tr|A0A553SSJ5|A0A553SSJ5_NIACIAlpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_03025PE=3SV=1	tr|A0A553SSJ5|A0A553SSJ5_NIACIAlpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_03025PE=3SV=1	tr|A0A553SSJ5|A0A553SSJ5_NIACIAlpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_03025PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	628.38330078125	2	628.385314	1254.75608	-4.0512	-0.0025457	-0.39444	-0.00024786	-4.4456	-0.0027935	628.3849132400738	150.53	4.7174	149.58	148	152.71	-0.95647					178	94	2	0	0	0	0.70152	1	12741	12741		30.318	3.6248	1	419100			48657	34382	40375	40402	52197	52197					0.13888753204946624
RKINRDIA	8	Unmodified	_RKINRDIA_					0	0	0		ENSG00000173611|ENST00000336505|SCAI;nc|ENSG00000173611|Q8N9R8-2|SCAI	ENSG00000173611|ENST00000336505|SCAI	ENSG00000173611|ENST00000336505|SCAI	MULTI-MSMS	OvCa9_classI_Rep2	2	493.298583984375	2	493.298707	984.582862	3.1299	0.001544	-3.147	-0.0015524	-0.017108	-8.4391E-06	493.29693905803276	26.988	0.77444	24.278	24.097	24.871	-2.7097					47	21	3	0	0	0	0.73938	1	414	414		31.955	0	1	72756			48658	7396	40376	40403	52198	52198					0.08995387148547707
RKIRDRVC	8	Unmodified	_RKIRDRVC_					0	0	0			REV__ENSG00000109475|ENST00000394667|RPL34	REV__ENSG00000109475|ENST00000394667|RPL34	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3028564453125	2	523.30601	1044.59747	-2.1227	-0.0011108	-2.4633	-0.0012891	-4.5861	-0.0023999	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.74679	1	11466	11466		28.254	1.4582	1	183010	+		48659	17932	40377	40404	52199	52199					0.07695136025040483
RKISAVNLRNT	11	Unmodified	_RKISAVNLRNT_					0	0	0		tr|A0A553SMB0|A0A553SMB0_NIACIIntegraseOS=NialliacirculansOX=1397GN=CEQ21_22230PE=4SV=1	tr|A0A553SMB0|A0A553SMB0_NIACIIntegraseOS=NialliacirculansOX=1397GN=CEQ21_22230PE=4SV=1	tr|A0A553SMB0|A0A553SMB0_NIACIIntegraseOS=NialliacirculansOX=1397GN=CEQ21_22230PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	424.6984558105469	3	424.589599	1270.74697	0.30374	0.00012897	-1.9235	-0.00081668	-1.6197	-0.00068771	424.58860084574025	31.435	0.24504	31.435	31.264	31.509	0					7	4	2	0	0	0	0.026204	1	1288	1288		16.53	0	1	14891			48660	33819	40378	40405	52200	52200					0.12242359848642081
RKIWNAVAPIA	11	Unmodified	_RKIWNAVAPIA_					0	0	0			REV__ENSG00000163106|ENST00000295256|HPGDS	REV__ENSG00000163106|ENST00000295256|HPGDS	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8687133789062	2	619.87204	1237.72953	-3.6059	-0.0022352	-0.65337	-0.00040501	-4.2593	-0.0026402	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.68263	5	12835	12720;12835;12871;12899;12991		35.618	6.2903	1	664560	+		48661	20809	40379	40406	52201;52202;52203;52204;52205	52202					0.1201706431365892
RKIWNAVAPIA	11	Unmodified	_RKIWNAVAPIA_					0	0	0			REV__ENSG00000163106|ENST00000295256|HPGDS	REV__ENSG00000163106|ENST00000295256|HPGDS	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8680419921875	2	619.87204	1237.72953	-3.1194	-0.0019336	-1.2014	-0.00074472	-4.3208	-0.0026783	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.69081	1	15069	15069		32.812	2.4947	1	806750	+		48662	20809	40379	40406	52206	52206					0.1201706431365892
RKKEQERIK	9	Unmodified	_RKKEQERIK_					0	0	0			REV__ENSG00000277865|ENST00000622895|GOLGA6L22	REV__ENSG00000277865|ENST00000622895|GOLGA6L22	MULTI-MSMS	OvCa99_classI_Rep5	1	607.8709106445312	2	607.870028	1213.7255	0.27844	0.00016925	0.18947	0.00011517	0.46791	0.00028443	607.8699438920082	21.352	0.31944	21.352	21.212	21.532	0					16	9	3	0	0	0	0.46356	1	116	116		45.972	6.7194	1	56544	+		48663	23636	40380	40407	52207	52207					0.12718974819927098
RKKEVVERRKM	11	Unmodified	_RKKEVVERRKM_					0	0	0		chr12:6769674-6769973|149|36.91|0.24|7.26|+|0|PTMS,None|1	chr12:6769674-6769973|149|36.91|0.24|7.26|+|0|PTMS,None|1	chr12:6769674-6769973|149|36.91|0.24|7.26|+|0|PTMS,None|1	MULTI-MSMS	OvCa9_classI_Rep2	2	486.9568786621094	3	486.961038	1457.86129	-4.5662	-0.0022236	0.3668	0.00017862	-4.1994	-0.002045	486.96097052321403	158.19	2.6802	157.96	156.57	159.25	-0.22697					116	71	2	0	0	0	0.72516	1	16065	16065		13.508	7.1871	1	34308			48664	330	40381	40408	52208	52208					0.15066926339068232
RKKEVVERRKM	11	Unmodified	_RKKEVVERRKM_					0	0	0		chr12:6769674-6769973|149|36.91|0.24|7.26|+|0|PTMS,None|1	chr12:6769674-6769973|149|36.91|0.24|7.26|+|0|PTMS,None|1	chr12:6769674-6769973|149|36.91|0.24|7.26|+|0|PTMS,None|1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	486.961038	1457.86129	-6.1851	-0.0030119	1.9413	0.00094534	-4.2437	-0.0020665	486.96167892563795	159.71	0.77483	158.1	157.89	158.67	-1.6101	0.066353	0.0020391	NaN	13.508	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24765			48665	330	40381	40408							0.15066926339068232
RKKIGTQTHGI	11	Unmodified	_RKKIGTQTHGI_					0	0	0		ENST00000573580.5_2_16:3493766-3529556:+|nuORF	ENST00000573580.5_2_16:3493766-3529556:+|nuORF	ENST00000573580.5_2_16:3493766-3529556:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8695068359375	2	619.870028	1237.7255	-3.8587	-0.0023919	2.9348	0.0018192	-0.92393	-0.00057272	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.70142	2	15375	15217;15375		29.17	3.5723	1	492670			48666	13921	40382	40409	52209;52210	52210					0.11614974819940471
RKKIGTQTHGI	11	Unmodified	_RKKIGTQTHGI_					0	0	0		ENST00000573580.5_2_16:3493766-3529556:+|nuORF	ENST00000573580.5_2_16:3493766-3529556:+|nuORF	ENST00000573580.5_2_16:3493766-3529556:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8693237304688	2	619.870028	1237.7255	-3.1194	-0.0019336	2.0434	0.0012667	-1.076	-0.00066696	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.69455	1	14792	14792		31.53	1.2121	1	806750			48667	13921	40382	40409	52211	52211					0.11614974819940471
RKKKAKGKK	9	Unmodified	_RKKKAKGKK_					0	0	0			REV__ENSG00000106299|ENST00000223023|WASL	REV__ENSG00000106299|ENST00000223023|WASL	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3071899414062	2	536.377292	1070.74003	1.1082	0.0005944	0.059434	3.1879E-05	1.1676	0.00062628	536.3770833004057	74.636	0.15903	74.636	74.517	74.676	0					5	3	2	0	0	0	0.027462	1	7396	7396		3.41	2.0824	1	47046	+		48668	17790	40383	40410	52212	52212					0.2074909175873927
RKKKREEAEKL	11	Unmodified	_RKKKREEAEKL_					0	0	0		ENST00000508336.1_1_4:166469096-166469723:-|nuORF;nc|ENSG00000198000|Q76FK4-2|NOL8;nc|ENSG00000198000|Q76FK4-4|NOL8;ENSG00000198000|ENST00000442668|NOL8	ENST00000508336.1_1_4:166469096-166469723:-|nuORF	ENST00000508336.1_1_4:166469096-166469723:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	472.2830505371094	3	472.287808	1413.8416	-5.4674	-0.0025822	-3.1122	-0.0014698	-8.5796	-0.004052	472.286486090062	156.6	1.7536	155.43	154.84	156.59	-1.1707					66	39	2	0	0	0	0.72497	1	13501	13501		15.921	0.58318	1	58221			48669	12943	40384	40411	52213	52213					0.15122873599989362
RKKKTSDIY	9	Unmodified	_RKKKTSDIY_					0	0	0		nc|ENSG00000106771|Q9H330-4|TMEM245;TMEM245|p.L666Sfs*9|1|0.2|ENSG00000106771|chr9:109050410-109050411|-/A|frameshift_variant;ENSG00000106771|ENST00000374586|TMEM245	nc|ENSG00000106771|Q9H330-4|TMEM245	nc|ENSG00000106771|Q9H330-4|TMEM245	MULTI-MSMS	OvCa9_classI_Rep3	3	569.834716796875	2	569.83258	1137.65061	-0.6563	-0.00037398	3.4004	0.0019377	2.7441	0.0015637	569.8345222869018	99.284	4.3485	97.599	97.322	101.67	-1.685					272	84	6	0	0	0	0.29717	1	6835	6835		63.306	2.3343	1	12084000			48670	2572	40385	40412	52214	52214					0.08728792288729892
RKKNKLKKCFR	11	Unmodified	_RKKNKLKKCFR_					0	0	0			REV__ENST00000313843.7_1_16:31051123-31051483:+|nuORF	REV__ENST00000313843.7_1_16:31051123-31051483:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	483.9692077636719	3	483.638007	1447.89219	-6.2422	-0.003019	-0.88389	-0.00042748	-7.1261	-0.0034465	483.63750108223127	159.48	3.4267	157.89	156.66	160.09	-1.5894					215	86	4	0	0	0	0.72582	1	15685	15685		3.6191	0.21035	1	104790	+		48671	24373	40386	40413	52215	52215					0.1861612444399725
RKKPNGLLT	9	Unmodified	_RKKPNGLLT_					0	0	0			REV__ENSG00000111262|ENST00000382545|KCNA1	REV__ENSG00000111262|ENST00000382545|KCNA1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.2904663085938	2	513.824558	1025.63456	-1.4528	-0.00074648	0.58381	0.00029998	-0.86899	-0.00044651	513.8246196849354	72.581	0.8764	69.185	68.667	69.543	-3.3961					37	17	3	0	0	0	0.027462	1	5583	5583		53.351	24.202	1	175520	+		48672	18024	40387	40414	52216	52216					0.12277130842471706
RKKPNGLLT	9	Unmodified	_RKKPNGLLT_					0	0	0			REV__ENSG00000111262|ENST00000382545|KCNA1	REV__ENSG00000111262|ENST00000382545|KCNA1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	513.824558	1025.63456	0.6494	0.00033368	-0.62098	-0.00031907	0.028423	1.4604E-05	513.8240673698068	71.338	1.0432	68.831	68.078	69.121	-2.5071	-0.14432	-0.00037926	NaN	26.693	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163460	+		48673	18024	40387	40414							0.12277130842471706
RKKPNGLLT	9	Unmodified	_RKKPNGLLT_					0	0	0			REV__ENSG00000111262|ENST00000382545|KCNA1	REV__ENSG00000111262|ENST00000382545|KCNA1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	513.824558	1025.63456	0.66329	0.00034081	-0.33613	-0.00017271	0.32716	0.0001681	513.824127831924	71.513	1.1539	68.91	68.126	69.28	-2.6023	-0.065071	-8.653E-05	NaN	26.693	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226710	+		48674	18024	40387	40414							0.12277130842471706
RKKPSVAFKKP	11	Unmodified	_RKKPSVAFKKP_					0	0	0		NCKAP5|p.S1071Vfs*4|1|0.05|ENSG00000176771|chr2:132783600-132783601|-/C|frameshift_variant;NCKAP5|p.P1518Qfs*3|1|0.11|ENSG00000176771|chr2:132782258-132782258|G/-|frameshift_variant;ENSG00000176771|ENST00000409261|NCKAP5	NCKAP5|p.S1071Vfs*4|1|0.05|ENSG00000176771|chr2:132783600-132783601|-/C|frameshift_variant	NCKAP5|p.S1071Vfs*4|1|0.05|ENSG00000176771|chr2:132783600-132783601|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	643.4059448242188	2	643.408789	1284.80303	-6.9828	-0.0044928	4.3227	0.0027812	-2.6601	-0.0017115	643.4116434539937	163.98	0.24121	162.59	162.42	162.66	-1.3925					12	4	4	0	0	0	0.70142	1	14318	14318		29.17	3.596	1	1377800			48675	7627	40388	40415	52217	52217					0.17201612756116447
RKKQLMRS	8	Unmodified	_RKKQLMRS_					0	0	0			REV__ENST00000291572.12_1_21:45403063-45403207:+|nuORF	REV__ENST00000291572.12_1_21:45403063-45403207:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.3306884765625	2	523.81621	1045.61787	-0.19449	-0.00010187	-3.9134	-0.0020499	-4.1079	-0.0021518	523.8140603591779	47.984	0.35716	44.877	44.581	44.938	-3.1077					11	6	2	0	0	0	0.028476	1	2597	2597		24.203	0	1	138130	+		48676	24156	40389	40416	52218	52218					0.0968830668487044
RKKQLVAFNK	10	Unmodified	_RKKQLVAFNK_					0	0	0			REV__nc|ENSG00000132361|O75153|CLUH	REV__nc|ENSG00000132361|O75153|CLUH	MULTI-SECPEP	OvCa9_classI_Rep4_	4	617.2711181640625	2	616.385314	1230.75608	0.81873	0.00050466	-0.57139	-0.0003522	0.24734	0.00015246	616.3847624708679	33.015	0.89505	30.32	29.953	30.848	-2.6954					32	17	3	0	0	0	0.027446	1	886	886		10.265	0	1	37754	+		48677	19071	40390	40417	52219	52219					0.14992753204978726
RKKRDREQKRR	11	Unmodified	_RKKRDREQKRR_					0	0	0			REV__ENST00000468290.1_1_9:136198707-136199617:-|nuORF	REV__ENST00000468290.1_1_9:136198707-136199617:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.8206176757812	3	519.316984	1554.92912	0.83886	0.00043563	-1.6602	-0.00086216	-0.82132	-0.00042653	519.3148226290093	131.63	0.38924	131.4	131.3	131.69	-0.22696					13	7	3	0	0	0	0.02653	1	12994	12994		3.4087	0.19739	1	16701	+		48678	20098	40391	40418	52220	52220					0.17385512314081097
RKKREYRLF	9	Unmodified	_RKKREYRLF_					0	0	0			REV__ENST00000530958.5_1_11:108094696-108094846:+|nuORF	REV__ENST00000530958.5_1_11:108094696-108094846:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	432.59490966796875	3	432.594684	1294.76222	-0.63357	-0.00027408	0.3948	0.00017079	-0.23877	-0.00010329	432.5948373666812	57.879	2.8015	55.087	54.625	57.426	-2.792					168	54	5	0	0	0	0.59259	1	4180	4180		32.812	1.2826	1	528810	+		48679	27210	40392	40419	52221	52221					0.12663271436508694
RKKREYRLFLK	11	Unmodified	_RKKREYRLFLK_					0	0	0			REV__ENST00000530958.5_1_11:108094696-108094846:+|nuORF	REV__ENST00000530958.5_1_11:108094696-108094846:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	512.9844360351562	3	512.987693	1535.94125	-4.9038	-0.0025156	0.4465	0.00022905	-4.4573	-0.0022865	512.9879880478285	162.73	1.8375	162.51	160.84	162.68	-0.22697					96	36	4	0	0	0	0.72582	1	16535	16535		1.523	0	1	139950	+		48680	27210	40393	40420	52222	52222					0.19471736004584272
RKKRLTWMKWR	11	Unmodified	_RKKRLTWMKWR_					0	0	0			REV__ENST00000420660.5_1_2:219134176-219134257:-|nuORF	REV__ENST00000420660.5_1_2:219134176-219134257:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	530.650634765625	3	530.317156	1587.92964	2.2623	0.0011997	-2.3488	-0.0012456	-0.086495	-4.587E-05	530.3158469525338	99.683	0.57826	99.683	99.318	99.896	0					25	13	3	0	0	0	0.72548	1	11027	11027		9.2118	0.41249	1	866440	+		48681	25594	40394	40421	52223	52223					0.1591921570957311
RKKRPDPTP	9	Unmodified	_RKKRPDPTP_					0	0	0		nc|ENSG00000198026|Q9H4Z2-2|ZNF335;ENSG00000198026|ENST00000322927|ZNF335	nc|ENSG00000198026|Q9H4Z2-2|ZNF335	nc|ENSG00000198026|Q9H4Z2-2|ZNF335	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.8258666992188	2	547.825089	1093.63563	-0.32802	-0.0001797	-0.19373	-0.00010613	-0.52176	-0.00028583	547.824898906818	57.81	1.3606	54.465	54.138	55.498	-3.3449					54	26	3	0	0	0	0.63422	1	3778	3778		27.882	0	1	531360			48682	8773	40395	40422	52224	52224					0.0925534521136342
RKKRRSRRGHR	11	Unmodified	_RKKRRSRRGHR_					0	0	0			REV__chr19:11441357-11447553|87|56.1|0.0|22.42|+|1|PRKCSH,None|1	REV__chr19:11441357-11447553|87|56.1|0.0|22.42|+|1|PRKCSH,None|1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3107604980469	3	498.313797	1491.91956	-5.1129	-0.0025478	-2.7301	-0.0013604	-7.843	-0.0039083	498.3123780141879	160.35	1.8473	160.12	159.68	161.53	-0.22697					120	37	4	0	0	0	0.72568	1	16311	16311		6.6596	0	1	150420	+		48683	15962	40396	40423	52225	52225					0.19327788819236957
RKKRRSRRGHR	11	Unmodified	_RKKRRSRRGHR_					0	0	0			REV__chr19:11441357-11447553|87|56.1|0.0|22.42|+|1|PRKCSH,None|1	REV__chr19:11441357-11447553|87|56.1|0.0|22.42|+|1|PRKCSH,None|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.309326171875	3	498.313797	1491.91956	-6.6762	-0.0033268	-0.99975	-0.00049819	-7.6759	-0.003825	498.3133001501435	161.41	1.8887	159.79	158.52	160.4	-1.6239					107	42	4	0	0	0	0.7257	1	15964	15964		6.3209	0	1	100850	+		48684	15962	40396	40423	52226	52226					0.19327788819236957
RKKRYLRHDKP	11	Unmodified	_RKKRYLRHDKP_					0	0	0		ENSG00000160973|ENST00000377317|FOXH1	ENSG00000160973|ENST00000377317|FOXH1	ENSG00000160973|ENST00000377317|FOXH1	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.6106262207031	3	499.635542	1495.8848	-0.67289	-0.0003362	-2.8527	-0.0014253	-3.5256	-0.0017615	499.635583502811	25.217	0.15023	25.217	25.092	25.242	0					4	2	2	0	0	0	0.026324	1	538	538		11.932	0	1	4642.3			48685	6111	40397	40424	52227	52227					0.15669108167912782
RKKSNISPN	9	Unmodified	_RKKSNISPN_					0	0	0		nc|ENSG00000164086|Q16829-2|DUSP7;ENSG00000164086|ENST00000495880|DUSP7;DUSP9|p.N332I|1|0.74|ENSG00000130829|chrX:153650145-153650145|A/T|missense_variant;ENSG00000130829|ENST00000342782|DUSP9	nc|ENSG00000164086|Q16829-2|DUSP7	nc|ENSG00000164086|Q16829-2|DUSP7	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.8240356445312	2	522.301447	1042.58834	0.70489	0.00036816	-4.0122	-0.0020956	-3.3073	-0.0017274	522.8013651428245	80.755	0.20146	79.06	78.967	79.168	-1.6951					5	3	2	0	0	0	0.027433	1	6821	6821		64.207	5.4253	1	30287			48686	6405	40398	40425	52228	52228					0.06875065940380409
RKKSRLFYVL	10	Unmodified	_RKKSRLFYVL_					0	0	0			REV__ENST00000547865.5_2_12:49854586-49856075:+|nuORF	REV__ENST00000547865.5_2_12:49854586-49856075:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	437.2746276855469	3	437.274952	1308.80303	-0.13517	-5.9107E-05	-3.2119	-0.0014045	-3.3471	-0.0014636	437.2735418163394	68.807	1.9959	66.187	65.77	67.766	-2.6203					109	39	4	0	0	0	0.66944	1	5430	5430		33.922	2.2874	1	800580	+		48687	27435	40399	40426	52229	52229					0.16097612756107083
RKKSRLFYVL	10	Unmodified	_RKKSRLFYVL_					0	0	0			REV__ENST00000547865.5_2_12:49854586-49856075:+|nuORF	REV__ENST00000547865.5_2_12:49854586-49856075:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	437.27423095703125	3	437.274952	1308.80303	1.0101	0.00044167	-4.3098	-0.0018846	-3.2998	-0.0014429	437.27305961907143	69.199	2.757	66.384	66.063	68.82	-2.8144					169	54	5	0	0	0	0.64697	1	3085	3085		36.447	2.3602	1	1037200	+		48688	27435	40399	40426	52230	52230					0.16097612756107083
RKKTVPNN	8	Unmodified	_RKKTVPNN_					0	0	0			REV__tr|A0A7D6ZT85|A0A7D6ZT85_9CLOTATP-dependentDNAhelicaseRecGOS=ClostridiumintestinaleOX=36845GN=recGPE=3SV=1	REV__tr|A0A7D6ZT85|A0A7D6ZT85_9CLOTATP-dependentDNAhelicaseRecGOS=ClostridiumintestinaleOX=36845GN=recGPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	478.78515625	2	478.785433	955.556313	-2.4635	-0.0011795	2.3243	0.0011128	-0.13927	-6.6679E-05	478.7864521794397	145.79	1.5385	145.57	144.98	146.52	-0.22696					81	30	4	0	0	0	0.75661	1	14696	14696		19.36	1.0356	1	230950	+		48689	32202	40400	40427	52231	52231					0.0767569825721921
RKKTVPNN	8	Unmodified	_RKKTVPNN_					0	0	0			REV__tr|A0A7D6ZT85|A0A7D6ZT85_9CLOTATP-dependentDNAhelicaseRecGOS=ClostridiumintestinaleOX=36845GN=recGPE=3SV=1	REV__tr|A0A7D6ZT85|A0A7D6ZT85_9CLOTATP-dependentDNAhelicaseRecGOS=ClostridiumintestinaleOX=36845GN=recGPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	478.7850646972656	2	478.785433	955.556313	-3.0173	-0.0014446	2.9044	0.0013906	-0.11287	-5.4041E-05	478.78669233564773	146.16	1.5937	145.21	144.8	146.39	-0.95947					82	31	4	0	0	0	0.74754	1	12243	12243		27.882	3.3782	1	384210	+		48690	32202	40400	40427	52232	52232					0.0767569825721921
RKKTVRFAN	9	Unmodified	_RKKTVRFAN_					0	0	0			REV__tr|A0A7D7A1E6|A0A7D7A1E6_9CLOTSulfitereductasesubunitCOS=ClostridiumintestinaleOX=36845GN=asrCPE=3SV=1	REV__tr|A0A7D7A1E6|A0A7D7A1E6_9CLOTSulfitereductasesubunitCOS=ClostridiumintestinaleOX=36845GN=asrCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.338134765625	2	560.340907	1118.66726	-5.405	-0.0030286	4.1979	0.0023523	-1.2071	-0.00067639	560.3432112723539	161.88	2.7705	160.26	159.52	162.29	-1.6239					146	74	5	0	0	0	0.64427	1	16048	16048		26.693	3.6504	1	403070	+		48691	32488	40401	40428	52233	52233					0.11267337965318802
RKKVKSGN	8	Unmodified	_RKKVKSGN_					0	0	0		ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	ENSG00000124766|ENST00000244745|SOX4	MULTI-MSMS	OvCa9_classI_Rep2	2	458.7878723144531	2	458.787976	915.561398	-2.0925	-0.00096003	2.0092	0.00092177	-0.083388	-3.8258E-05	458.7887619770069	147.55	1.9467	147.32	146.82	148.77	-0.22697					104	38	4	0	0	0	0.7549	1	14937	14937		24.203	4.8428	1	613710			48692	3677	40402	40429	52234	52234					0.10024002119860143
RKKVSPFV	8	Unmodified	_RKKVSPFV_					0	0	0			REV__ENST00000483254.1_1_9:119135964-119158892:+|nuORF	REV__ENST00000483254.1_1_9:119135964-119158892:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	480.8006591796875	2	480.803094	959.591636	-3.5276	-0.0016961	-0.80978	-0.00038934	-4.3374	-0.0020854	480.80256125573777	150.83	1.6209	150.61	150.17	151.79	-0.22696					93	32	4	0	0	0	0.75241	1	15346	15346		25.45	2.4135	1	676150	+		48693	26521	40403	40430	52235	52235					0.11022360785045748
RKKVSPFV	8	Unmodified	_RKKVSPFV_					0	0	0			REV__ENST00000483254.1_1_9:119135964-119158892:+|nuORF	REV__ENST00000483254.1_1_9:119135964-119158892:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.79998779296875	2	480.803094	959.591636	-3.2353	-0.0015556	-1.1249	-0.00054087	-4.3603	-0.0020964	480.80242897085384	151.49	1.9682	150.06	149.63	151.6	-1.4344					128	43	5	0	0	0	0.74971	1	15017	15017		26.796	0.10319	1	1260100	+		48694	26521	40403	40430	52236	52236					0.11022360785045748
RKLDHYLE	8	Unmodified	_RKLDHYLE_					0	0	0		ENSG00000140015|ENST00000322893|KCNH5;ENST00000394964.3_1_14:63416779-63568536:-|nuORF;nc|ENSG00000140015|Q8NCM2-2|KCNH5;nc|ENSG00000140015|Q8NCM2-3|KCNH5	ENSG00000140015|ENST00000322893|KCNH5	ENSG00000140015|ENST00000322893|KCNH5	MSMS	OvCa99_classI_Rep5	1	537.288330078125	2	537.290548	1072.56654	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.15	1	34.15	33.65	34.65	0								0	0	0	0.30129	1	1624	1624		45.952	0	1				48695	4818	40404	40431	52237	52237					0.03316261191821468
RKLDLPREAFE	11	Unmodified	_RKLDLPREAFE_					0	0	0		ENSG00000100024|ENST00000326010|UPB1	ENSG00000100024|ENST00000326010|UPB1	ENSG00000100024|ENST00000326010|UPB1	MULTI-MSMS	OvCa9_classI_Rep2	2	458.5896911621094	3	458.589376	1372.7463	-0.52575	-0.0002411	1.233	0.00056543	0.70721	0.00032432	458.5898478189458	54.048	2.6368	51.234	50.578	53.215	-2.8139					132	52	4	0	0	0	0.6511	1	3691	3691		40.015	2.4155	1	257930			48696	1994	40405	40432	52238	52238					0.07483520408936783
RKLELIVA	8	Unmodified	_RKLELIVA_					0	0	0			REV__ENST00000591149.5_1_19:2807001-2808381:+|nuORF	REV__ENST00000591149.5_1_19:2807001-2808381:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.30987548828125	2	471.310752	940.606951	0.63501	0.00029929	-0.99591	-0.00046938	-0.36089	-0.00017009	471.31024904441927	22.362	2.2823	21.024	20.523	22.806	-1.3386					219	69	5	0	0	0	0.62934	1	258	258		57.811	2.3071	1	1692100	+		48697	21667	40406	40433	52239	52239					0.13427227582246815
RKLFTNKGY	9	Unmodified	_RKLFTNKGY_					0	0	0		tr|A0A7D6ZXN7|A0A7D6ZXN7_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13875PE=4SV=1	tr|A0A7D6ZXN7|A0A7D6ZXN7_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13875PE=4SV=1	tr|A0A7D6ZXN7|A0A7D6ZXN7_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13875PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.8230590820312	2	563.822015	1125.62948	1.2021	0.00067775	-2.0052	-0.0011306	-0.80314	-0.00045283	563.8207497096755	77.953	2.927	75.136	74.777	77.704	-2.8165					121	60	5	0	0	0	0.40667	1	6274	6274		51.335	3.3759	1	1673800			48698	35886	40407	40434	52240	52240					0.0716882697984147
RKLGPQGR	8	Unmodified	_RKLGPQGR_					0	0	0			REV__nc|ENSG00000142303|Q9H324|ADAMTS10	REV__nc|ENSG00000142303|Q9H324|ADAMTS10	MULTI-MSMS	OvCa99_classI_Rep5	1	456.2802734375	2	456.280318	910.546083	-0.27264	-0.0001244	0.10562	4.8194E-05	-0.16702	-7.6206E-05	456.2803726679662	35.959	1.3723	35.959	35.246	36.618	0					44	29	3	0	0	0	0.7224	1	1859	1859		38.806	4.6336	1	647200	+		48699	19780	40408	40435	52241	52241					0.08723135322657072
RKLIEVIA	8	Unmodified	_RKLIEVIA_					0	0	0			REV__tr|A0A7D6ZFA0|A0A7D6ZFA0_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16955PE=4SV=1	REV__tr|A0A7D6ZFA0|A0A7D6ZFA0_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16955PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	471.3109436035156	2	471.310752	940.606951	-1.3467	-0.0006347	0.9748	0.00045943	-0.37187	-0.00017526	471.31115558776486	33.805	2.3785	31.096	30.823	33.201	-2.7097					116	47	5	0	0	0	0.62934	2	1270	1270;1294		57.811	1.0523	1	1913400	+		48700	31962	40409	40436	52242;52243	52242					0.13427227582235446
RKLIEVIA	8	Unmodified	_RKLIEVIA_					0	0	0			REV__tr|A0A7D6ZFA0|A0A7D6ZFA0_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16955PE=4SV=1	REV__tr|A0A7D6ZFA0|A0A7D6ZFA0_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16955PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.3106689453125	2	471.310752	940.606951	0.63501	0.00029929	-0.99591	-0.00046938	-0.36089	-0.00017009	471.31024904441927	22.362	2.2823	21.024	20.523	22.806	-1.3386					219	69	5	0	0	0	0.60331	1	318	318		63.306	0	1	1692100	+		48701	31962	40409	40436	52244	52244					0.13427227582235446
RKLIEVIA	8	Unmodified	_RKLIEVIA_					0	0	0			REV__tr|A0A7D6ZFA0|A0A7D6ZFA0_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16955PE=4SV=1	REV__tr|A0A7D6ZFA0|A0A7D6ZFA0_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16955PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.3106994628906	2	471.310752	940.606951	1.3289	0.00062632	-1.6854	-0.00079433	-0.35646	-0.000168	471.3099028886094	32.057	2.5601	29.362	28.732	31.293	-2.6954					224	67	4	0	0	0	0.36941	2	784	741;784		94.006	5.3636	1	1074400	+		48702	31962	40409	40436	52245;52246	52246					0.13427227582235446
RKLIHVLE	8	Unmodified	_RKLIHVLE_					0	0	0			REV__chr8:54554490-54558760|394|11.07|0.1|6.82|+|0|RP1,RP1|1	REV__chr8:54554490-54558760|394|11.07|0.1|6.82|+|0|RP1,RP1|1	MULTI-MSMS	OvCa9_classI_Rep2	2	504.3185119628906	2	504.321651	1006.62875	-2.2581	-0.0011388	-2.0525	-0.0010351	-4.3106	-0.0021739	504.3205579981571	143.45	0.88844	143.22	142.85	143.74	-0.22696					32	17	2	0	0	0	0.74394	1	14424	14424		13.775	0	1	34923	+		48703	16115	40410	40437	52247	52247					0.12570032330791037
RKLIHVLE	8	Unmodified	_RKLIHVLE_					0	0	0			REV__chr8:54554490-54558760|394|11.07|0.1|6.82|+|0|RP1,RP1|1	REV__chr8:54554490-54558760|394|11.07|0.1|6.82|+|0|RP1,RP1|1	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	504.321651	1006.62875	-2.2581	-0.0011388	-2.0525	-0.0010351	-4.3106	-0.0021739	504.3205579981571	143.45	0.88844	143.22	142.85	143.74	-0.22696	0.25484	0.00038923	NaN	13.775	32	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34923	+		48704	16115	40410	40437							0.12570032330791037
RKLIHVLE	8	Unmodified	_RKLIHVLE_					0	0	0			REV__chr8:54554490-54558760|394|11.07|0.1|6.82|+|0|RP1,RP1|1	REV__chr8:54554490-54558760|394|11.07|0.1|6.82|+|0|RP1,RP1|1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	504.321651	1006.62875	-3.362	-0.0016955	-0.70522	-0.00035566	-4.0672	-0.0020512	504.32125548753726	143.88	0.89056	142.89	142.54	143.43	-0.9903	-0.075568	0.0017482	NaN	13.775	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25095	+		48705	16115	40410	40437							0.12570032330791037
RKLKRFARQQQ	11	Unmodified	_RKLKRFARQQQ_					0	0	0			REV__Harlequin-int_dup161|chr4:91353598-91357139:-|1.3911466287095282|0.2716421829311496|2.36|422.0|92|3|sense	REV__Harlequin-int_dup161|chr4:91353598-91357139:-|1.3911466287095282|0.2716421829311496|2.36|422.0|92|3|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	486.9586486816406	3	486.963659	1457.86915	-6.9542	-0.0033864	-2.5955	-0.0012639	-9.5496	-0.0046503	486.9622029105925	158.45	2.296	157.18	156.33	158.63	-1.267					151	56	3	0	0	0	0.72516	1	13651	13651		13.508	0.55046	1	50747	+		48706	28175	40411	40438	52248	52248					0.15852821650878468
RKLLEGKDS	9	Unmodified	_RKLLEGKDS_					0	0	0		CON__REFSEQ:XP_092267	CON__REFSEQ:XP_092267	CON__REFSEQ:XP_092267	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3043823242188	2	523.303655	1044.59276	-2.1228	-0.0011108	2.0352	0.001065	-0.087543	-4.5811E-05	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.60342	1	11357	11357		31.53	0	1	183010		+	48707	667	40412	40439	52249	52249					0.07224530363282611
RKLLVEAL	8	Unmodified	_RKLLVEAL_					0	0	0		ENST00000527505.1_1_11:27076962-27137060:+|nuORF;ENSG00000129151|ENST00000263182|BBOX1	ENST00000527505.1_1_11:27076962-27137060:+|nuORF	ENST00000527505.1_1_11:27076962-27137060:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	471.3108215332031	2	471.310752	940.606951	-1.3467	-0.0006347	0.9748	0.00045943	-0.37187	-0.00017526	471.31115558776486	33.805	2.3785	31.096	30.823	33.201	-2.7097					116	47	5	0	0	0	0.60331	2	1251	1251;1276		63.306	5.495	1	1913400			48708	3921	40413	40440	52250;52251	52250					0.13427227582224077
RKLLVEAL	8	Unmodified	_RKLLVEAL_					0	0	0		ENST00000527505.1_1_11:27076962-27137060:+|nuORF;ENSG00000129151|ENST00000263182|BBOX1	ENST00000527505.1_1_11:27076962-27137060:+|nuORF	ENST00000527505.1_1_11:27076962-27137060:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.3114929199219	2	471.310752	940.606951	0.63501	0.00029929	-0.99591	-0.00046938	-0.36089	-0.00017009	471.31024904441927	22.362	2.2823	21.024	20.523	22.806	-1.3386					219	69	5	0	0	0	0.50674	3	247	247;294;383		76.847	8.3619	1	1692100			48709	3921	40413	40440	52252;52253;52254	52252					0.13427227582224077
RKLLVEAL	8	Unmodified	_RKLLVEAL_					0	0	0		ENST00000527505.1_1_11:27076962-27137060:+|nuORF;ENSG00000129151|ENST00000263182|BBOX1	ENST00000527505.1_1_11:27076962-27137060:+|nuORF	ENST00000527505.1_1_11:27076962-27137060:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.3101501464844	2	471.310752	940.606951	1.3289	0.00062632	-1.6854	-0.00079433	-0.35646	-0.000168	471.3099028886094	32.057	2.5601	29.362	28.732	31.293	-2.6954					224	67	4	0	0	0	0.56195	2	715	715;722		71.296	5.4925	1	1074400			48710	3921	40413	40440	52255;52256	52255					0.13427227582224077
RKLRRMAS	8	Unmodified	_RKLRRMAS_					0	0	0			REV__ENSG00000254466|ENST00000530162|OR4D10;REV__ENSG00000176200|ENST00000313253|OR4D11	REV__ENSG00000176200|ENST00000313253|OR4D11	MULTI-MSMS	OvCa9_classI_Rep3	3	509.3056945800781	2	509.308552	1016.60255	-3.8689	-0.0019705	-1.0046	-0.00051163	-4.8734	-0.0024821	509.30784512511417	146.87	1.2014	145.91	145.59	146.79	-0.95946					63	23	4	0	0	0	0.74971	1	12338	12338		26.796	0.10319	1	121690	+		48711	23516;21937	40414	40441	52257	52257					0.09491439887665365
RKLVKGPSKP	10	Unmodified	_RKLVKGPSKP_					0	0	0			REV__ENSG00000186439|ENST00000334268|TRDN	REV__ENSG00000186439|ENST00000334268|TRDN	MULTI-MSMS	OvCa99_classI_Rep5	1	555.3629150390625	2	555.361308	1108.70806	0.70507	0.00039157	-3.8985	-0.0021651	-3.1935	-0.0017735	555.3588450412137	63.332	0.39441	63.332	63.14	63.534	0					16	9	2	0	0	0	0.61634	1	5696	5696		40.058	4.8575	1	691050	+		48712	22583	40415	40442	52258	52258					0.15805679284949292
RKLYCKQD	8	Unmodified	_RKLYCKQD_					0	0	0		nc|ENSG00000136944|O60663-2|LMX1B;ENSG00000136944|ENST00000373474|LMX1B;nc|ENSG00000136944|O60663-3|LMX1B	nc|ENSG00000136944|O60663-2|LMX1B	nc|ENSG00000136944|O60663-2|LMX1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2974243164062	2	527.279126	1052.5437	-0.34079	-0.00017969	1.1476	0.0006051	0.8068	0.00042541	527.278997662998	61.177	0.47034	61.177	60.73	61.2	0					16	10	3	0	0	0	0.028476	1	5360	5360		35.201	0	1	312450			48713	4542	40416	40443	52259	52259					0.019529188026808697
RKLYDLAI	8	Unmodified	_RKLYDLAI_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-MSMS	OvCa9_classI_Rep2	2	496.3000793457031	2	496.300384	990.586216	-0.35919	-0.00017827	0.21743	0.00010791	-0.14176	-7.0356E-05	496.30031555631194	121.97	1.1373	121.75	121.47	122.61	-0.21803					58	22	4	0	0	0	0.745	1	11820	11820		29.15	4.9468	1	202890	+		48714	20262	40417	40444	52260	52260					0.0905463720255284
RKMCVRNLV	9	Unmodified	_RKMCVRNLV_					0	0	0		nc|ENSG00000174527|Q8N1T3-3|MYO1H;nc|ENSG00000174527|Q8N1T3|MYO1H;ENSG00000174527|ENST00000310903|MYO1H	nc|ENSG00000174527|Q8N1T3-3|MYO1H	nc|ENSG00000174527|Q8N1T3-3|MYO1H	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.28662109375	2	559.817896	1117.62124	1.7821	0.00099765	1.069	0.00059843	2.8511	0.0015961	559.8183819864051	34.483	0.74667	31.695	31.2	31.947	-2.7881					20	14	2	0	0	0	0.027462	1	980	980		24.203	0	1	7551.4			48715	7472	40418	40445	52261	52261					0.06713233467212376
RKMKRKESA	9	Unmodified	_RKMKRKESA_					0	0	0		nc|ENSG00000196504|O75400-2|PRPF40A;nc|ENSG00000196504|O75400|PRPF40A;ENSG00000196504|ENST00000545856|PRPF40A;nc|ENSG00000196504|O75400-3|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	nc|ENSG00000196504|O75400-2|PRPF40A	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3298950195312	2	567.332224	1132.6499	-3.474	-0.0019709	-0.82257	-0.00046667	-4.2966	-0.0024376	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.67509	1	12114	12114		23.042	0	1	458690			48716	8617	40419	40446	52262	52262					0.08887674368020271
RKMSKKFVEL	10	Unmodified	_RKMSKKFVEL_					0	0	0		ENSG00000185261|ENST00000682413|KIAA0825;nc|ENSG00000185261|Q8IV33|KIAA0825	ENSG00000185261|ENST00000682413|KIAA0825	ENSG00000185261|ENST00000682413|KIAA0825	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3681030273438	2	633.373558	1264.73256	-4.5141	-0.0028591	-2.3979	-0.0015187	-6.912	-0.0043779	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.75313	1	15585	15585		24.519	8.8774	1	369460			48717	8239	40420	40447	52263	52263					0.11078571376174295
RKPAQAPVS	9	Unmodified	_RKPAQAPVS_					0	0	0			REV__ENST00000480306.5_1_3:52027767-52028806:-|nuORF	REV__ENST00000480306.5_1_3:52027767-52028806:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	477.27984619140625	2	477.279983	952.545414	0.17022	8.1241E-05	-0.50363	-0.00024037	-0.33341	-0.00015913	477.2796555598478	32.772	1.2774	32.772	32.403	33.681	0					54	25	3	0	0	0	0.24951	1	1471	1471		68.787	6.6794	1	980030	+		48718	20725	40421	40448	52264	52264					0.06724295882941078
RKPEAVRG	8	Unmodified	_RKPEAVRG_					0	0	0			REV__ENST00000521638.1_1_5:153717591-153717873:-|nuORF	REV__ENST00000521638.1_1_5:153717591-153717873:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	456.7723083496094	2	456.772326	911.530098	0.41062	0.00018756	-0.36008	-0.00016447	0.050549	2.309E-05	456.7720882264302	137.84	1.2382	137.61	136.84	138.08	-0.22696					44	25	2	0	0	0	0.75241	1	13695	13695		25.45	1.2474	1	20083	+		48719	27071	40422	40449	52265	52265					0.07079429085752054
RKPFAVKAD	9	Unmodified	_RKPFAVKAD_					0	0	0		nc|ENSG00000186487|Q9UL68-4|MYT1L;ENSG00000186487|ENST00000647738|MYT1L	nc|ENSG00000186487|Q9UL68-4|MYT1L	nc|ENSG00000186487|Q9UL68-4|MYT1L	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.3045043945312	2	516.303458	1030.59236	-0.62044	-0.00032034	-0.28232	-0.00014576	-0.90276	-0.0004661	516.303207209785	62.857	2.0837	59.399	58.962	61.046	-3.4577					108	42	4	0	0	0	0.21395	1	4414	4414		73.975	2.0973	1	1463100			48720	8339	40423	40450	52266	52266					0.07829155434069435
RKPFVTVP	8	Unmodified	_RKPFVTVP_					0	0	0			REV__nc|ENSG00000170234|Q96N64-3|PWWP2A	REV__nc|ENSG00000170234|Q96N64-3|PWWP2A	MULTI-MSMS	OvCa9_classI_Rep2	2	472.2879943847656	2	472.28982	942.565087	-3.3722	-0.0015927	-0.90359	-0.00042676	-4.2758	-0.0020194	472.2892568382278	150.85	1.4757	150.62	150.22	151.7	-0.22697					85	29	4	0	0	0	0.74971	1	15292	15292		26.796	4.8362	1	396600	+		48721	21522	40424	40451	52267	52267					0.0915067189371257
RKPKAEEDEI	10	Unmodified	_RKPKAEEDEI_					0	0	0		nc|ENSG00000127022|P27824-3|CANX;ENSG00000127022|ENST00000247461|CANX;nc|ENSG00000127022|P27824-2|CANX	nc|ENSG00000127022|P27824-3|CANX	nc|ENSG00000127022|P27824-3|CANX	MULTI-MSMS	OvCa9_classI_Rep4_	4	405.5531311035156	3	405.550698	1213.63027	1.581	0.00064119	2.4183	0.00098076	3.9994	0.0016219	405.5517285111878	47.869	1.8516	44.762	44.433	46.285	-3.1077					93	35	5	0	0	0	0.47131	1	2595	2595		58.246	3.1623	1	535650			48722	3815	40425	40452	52268	52268					0.031995768382330425
RKPKYIHNL	9	Unmodified	_RKPKYIHNL_					0	0	0		CPD-NSRP1|2|fusion;CPD-NSRP1|1|fusion;ENSG00000126653|ENST00000247026|NSRP1	CPD-NSRP1|2|fusion;ENSG00000126653|ENST00000247026|NSRP1	CPD-NSRP1|2|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	584.852783203125	2	584.851107	1167.68766	-0.64357	-0.00037639	0.22838	0.00013357	-0.41519	-0.00024283	584.8510840070463	54.399	0.58907	54.399	54.172	54.761	0					29	13	4	0	0	0	0.22961	1	4392	4392		71.296	10.324	1	907010			48723	674;3791	40426	40453	52269	52269					0.11052508625130031
RKPPTLFRY	9	Unmodified	_RKPPTLFRY_					0	0	0		ENST00000367211.4_2_1:219786136-219786322:-|nuORF;ENST00000466470.5_1_1:203764919-203765618:+|nuORF	ENST00000367211.4_2_1:219786136-219786322:-|nuORF	ENST00000367211.4_2_1:219786136-219786322:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3421630859375	2	589.345658	1176.67676	-4.3129	-0.0025418	-0.40361	-0.00023787	-4.7165	-0.0027796	589.3453728975387	144.79	3.9151	143.81	141.71	145.63	-0.97299					242	78	5	0	0	0	0.5811	1	12087	12087		34.173	5.023	1	192050			48724	10839	40427	40454	52270	52270					0.09549106250869954
RKPPTLFRY	9	Unmodified	_RKPPTLFRY_					0	0	0		ENST00000367211.4_2_1:219786136-219786322:-|nuORF;ENST00000466470.5_1_1:203764919-203765618:+|nuORF	ENST00000367211.4_2_1:219786136-219786322:-|nuORF	ENST00000367211.4_2_1:219786136-219786322:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3424072265625	2	589.345658	1176.67676	-5.1334	-0.0030254	0.48454	0.00028556	-4.6489	-0.0027398	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.6653	1	12657	12657		24.203	0.68005	1	589610			48725	10839	40427	40454	52271	52271					0.09549106250869954
RKPTVTPTV	9	Unmodified	_RKPTVTPTV_					0	0	0		ENSG00000138592|ENST00000307179|USP8;nc|ENSG00000138592|P40818-2|USP8	ENSG00000138592|ENST00000307179|USP8	ENSG00000138592|ENST00000307179|USP8	MULTI-MSMS	OvCa9_classI_Rep2	2	499.80401611328125	2	499.803291	997.59203	-0.79283	-0.00039626	0.56419	0.00028199	-0.22863	-0.00011427	499.803503863494	58.325	1.5782	55.54	55.08	56.658	-2.7844					54	30	2	0	0	0	0.18193	1	4197	4197		79.451	0	1	917370			48726	4693	40428	40455	52272	52272					0.09313735714215454
RKPVLRYM	8	Unmodified	_RKPVLRYM_					0	0	0		tr|A0A553SKT9|A0A553SKT9_NIACIProbableglycinedehydrogenase(decarboxylating)subunit2OS=NialliacirculansOX=1397GN=gcvPBPE=3SV=1	tr|A0A553SKT9|A0A553SKT9_NIACIProbableglycinedehydrogenase(decarboxylating)subunit2OS=NialliacirculansOX=1397GN=gcvPBPE=3SV=1	tr|A0A553SKT9|A0A553SKT9_NIACIProbableglycinedehydrogenase(decarboxylating)subunit2OS=NialliacirculansOX=1397GN=gcvPBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	531.81689453125	2	531.815679	1061.6168	-1.8698	-0.0009944	4.179	0.0022225	2.3092	0.0012281	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.73938	2	13821	13821;13917		31.955	3.7006	1	166960			48727	33653	40429	40456	52273;52274	52273					0.08846092315957321
RKPVPAKLVP	10	Unmodified	_RKPVPAKLVP_					0	0	0			REV__nc|ENSG00000183844|P58499-2|FAM3B	REV__nc|ENSG00000183844|P58499-2|FAM3B	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.7696533203125	2	552.866226	1103.7179	2.5156	0.0013908	-1.908	-0.0010548	0.60763	0.00033594	552.8656600064518	75.62	0.50604	75.62	75.407	75.913	0					15	12	2	0	0	0	0.027284	1	7564	7564		20.947	2.6225	1	443320	+		48728	29049	40430	40457	52275	52275					0.170188672903123
RKPYHKKRKY	10	Unmodified	_RKPYHKKRKY_					0	0	0		ENST00000470475.1_1_1:45241268-45242451:+|nuORF;ENSG00000142937|ENST00000396651|RPS8	ENST00000470475.1_1_1:45241268-45242451:+|nuORF	ENST00000470475.1_1_1:45241268-45242451:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	468.6178283691406	3	468.6176	1402.83097	0.10704	5.0163E-05	-0.467	-0.00021884	-0.35996	-0.00016868	468.61735740254977	21.774	0.73509	21.774	21.45	22.185	0					54	25	3	0	0	0	0.83396	1	150	150		14.694	5.4819	1	38993			48729	5001	40431	40458	52276	52276					0.14566935736206688
RKQECRQHA	9	Unmodified	_RKQECRQHA_					0	0	0		ENST00000216281.12_1_14:102547104-102547248:-|nuORF	ENST00000216281.12_1_14:102547104-102547248:-|nuORF	ENST00000216281.12_1_14:102547104-102547248:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2902221679688	2	578.29363	1154.57271	-7.6021	-0.0043963	0.69188	0.00040011	-6.9102	-0.0039961	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.6653	1	13647	13647		24.203	1.1603	1	1429200			48730	9671	40432	40459	52277	52277					0.0016045615168422955
RKQEQQIR	8	Unmodified	_RKQEQQIR_					0	0	0			REV__nc|ENSG00000283228|O00305-4|CACNB4	REV__nc|ENSG00000283228|O00305-4|CACNB4	MULTI-MSMS	OvCa99_classI_Rep5	1	543.3126831054688	2	543.312346	1084.61014	-0.36242	-0.00019691	0.30752	0.00016708	-0.054898	-2.9826E-05	543.3124190976076	23.672	0.53975	23.672	23.497	24.036	0					24	10	3	0	0	0	0.50206	1	354	354		77.318	3.0625	1	289830	+		48731	22290	40433	40460	52278	52278					0.07121870688933996
RKQKLMYLLIV	11	Unmodified	_RKQKLMYLLIV_					0	0	0			REV__tr|A0A7D6ZVT7|A0A7D6ZVT7_9CLOTBatAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05445PE=4SV=1	REV__tr|A0A7D6ZVT7|A0A7D6ZVT7_9CLOTBatAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05445PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	468.9585266113281	3	468.963497	1403.86866	-5.0474	-0.002367	-4.0338	-0.0018917	-9.0812	-0.0042588	468.9614834162015	157.58	3.0388	156.04	155.07	158.11	-1.545					130	85	3	0	0	0	0.72538	1	15608	15608		10.587	1.375	1	74235	+		48732	32262	40434	40461	52279	52279					0.18288265886826593
RKQQTKAVRP	10	Unmodified	_RKQQTKAVRP_					0	0	0			REV__ENSG00000149346|ENST00000334534|SLX4IP	REV__ENSG00000149346|ENST00000334534|SLX4IP	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3699951171875	2	606.370195	1210.72584	-2.0217	-0.0012259	1.0061	0.00061009	-1.0156	-0.00061581	606.3706888805716	149.57	2.6994	148.14	147.52	150.22	-1.4344					165	58	4	0	0	0	0.74374	1	14811	14811		25.574	3.6142	1	304910	+		48733	20159	40435	40462	52280	52280					0.12890394539795125
RKQREILR	8	Unmodified	_RKQREILR_					0	0	0		HNF1B|p.D390Qfs*6|1|0.87|ENSG00000275410|chr17:37710531-37710541|TGGCCTGGGTC/-|frameshift_variant;nc|ENSG00000275410|P35680-3|HNF1B;HNF1B|p.L396Sfs*7|1|0.07|ENSG00000275410|chr17:37710523-37710523|G/-|frameshift_variant;ENSG00000275410|ENST00000617811|HNF1B;nc|ENSG00000275410|P35680-4|HNF1B;nc|ENSG00000275410|P35680-2|HNF1B	HNF1B|p.D390Qfs*6|1|0.87|ENSG00000275410|chr17:37710531-37710541|TGGCCTGGGTC/-|frameshift_variant	HNF1B|p.D390Qfs*6|1|0.87|ENSG00000275410|chr17:37710531-37710541|TGGCCTGGGTC/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.3706665039062	2	549.846356	1097.67816	-0.21815	-0.00011995	2.5152	0.001383	2.297	0.001263	549.8462067334581	30.816	0.44714	30.816	30.532	30.979	0					28	8	5	0	0	0	0.028476	1	1201	1201		47.916	9.1095	1	419530			48734	9571	40436	40463	52281	52281					0.1332274033959493
RKQRRLGEDKR	11	Unmodified	_RKQRRLGEDKR_					0	0	0		nc|ENSG00000112038|P35372-16|OPRM1	nc|ENSG00000112038|P35372-16|OPRM1	nc|ENSG00000112038|P35372-16|OPRM1	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.28240966796875	3	481.286802	1440.83858	-6.5406	-0.0031479	-0.17345	-8.3481E-05	-6.714	-0.0032314	481.28689914588375	161.43	3.2893	159.81	158.56	161.85	-1.6239					191	83	3	0	0	0	0.7252	1	15998	15998		12.957	2.8536	1	100850			48735	14961	40437	40464	52282	52282					0.1357904326582684
RKRDPKSKY	9	Unmodified	_RKRDPKSKY_					0	0	0			REV__nc|ENSG00000153707|P23468-7|PTPRD	REV__nc|ENSG00000153707|P23468-7|PTPRD	MULTI-MSMS	OvCa9_classI_Rep2	2	589.342041015625	2	589.343646	1176.67274	-2.3488	-0.0013843	1.0882	0.00064135	-1.2606	-0.00074293	589.3441165076871	144.49	4.0102	144.26	142.11	146.12	-0.22696					206	80	3	0	0	0	0.69913	1	14561	14561		18.262	0	1	105920	+		48736	28936	40438	40465	52283	52283					0.09147016757151505
RKRDVLGYSK	10	Unmodified	_RKRDVLGYSK_					0	0	0		ENSG00000180902|ENST00000321264|D2HGDH	ENSG00000180902|ENST00000321264|D2HGDH	ENSG00000180902|ENST00000321264|D2HGDH	MULTI-MSMS	OvCa9_classI_Rep2	2	611.3539428710938	2	611.356754	1220.69895	-3.7398	-0.0022864	2.6738	0.0016346	-1.0661	-0.00065175	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.6349	1	15225	15225		37.812	8.662	1	331570			48737	7897	40439	40466	52284	52284					0.09743285928584555
RKREHYEKPSV	11	Unmodified	_RKREHYEKPSV_					0	0	0		tr|A0A7D6ZNH0|A0A7D6ZNH0_9CLOTSmallribosomalsubunitproteinbS21OS=ClostridiumintestinaleOX=36845GN=rpsUPE=3SV=1	tr|A0A7D6ZNH0|A0A7D6ZNH0_9CLOTSmallribosomalsubunitproteinbS21OS=ClostridiumintestinaleOX=36845GN=rpsUPE=3SV=1	tr|A0A7D6ZNH0|A0A7D6ZNH0_9CLOTSmallribosomalsubunitproteinbS21OS=ClostridiumintestinaleOX=36845GN=rpsUPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.27984619140625	3	476.928392	1427.76335	0.17934	8.5533E-05	-1.9135	-0.00091261	-1.7342	-0.00082708	477.26190065331775	32.95	0.24138	32.95	32.748	32.989	0					6	4	2	0	0	0	0.026068	1	1471	1471		21.78	2.1535	1	15934			48738	35679	40440	40467	52285	52285					0.06657441014749566
RKREIERRRRE	11	Unmodified	_RKREIERRRRE_					0	0	0			REV__nc|ENSG00000125351|Q9BZI7-2|UPF3B	REV__nc|ENSG00000125351|Q9BZI7-2|UPF3B	MULTI-MSMS	OvCa99_classI_Rep5	1	528.6485595703125	3	528.648622	1582.92404	1.9693	0.0010411	-2.9696	-0.0015699	-1.0003	-0.00052878	528.647099748133	106.07	1.0586	106.07	105.7	106.76	0					76	23	5	0	0	0	0.7256	1	11914	11914		7.6794	1.6784	1	7321400	+		48739	18717	40441	40468	52286	52286					0.15589208451478953
RKRFVASHHK	10	Unmodified	_RKRFVASHHK_					0	0	0			REV__ENSG00000243811|ENST00000216099|APOBEC3D	REV__ENSG00000243811|ENST00000216099|APOBEC3D	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.3671875	2	633.37053	1264.72651	-2.6571	-0.001683	0.45451	0.00028788	-2.2026	-0.0013951	633.3706685096566	150.42	2.9234	148.98	147.78	150.7	-1.4344					195	63	4	0	0	0	0.762	1	14877	14877		23.523	0	1	147740	+		48740	23469	40442	40469	52287	52287					0.10473233979496399
RKRFVSRTG	9	Unmodified	_RKRFVSRTG_					0	0	0			REV__ENST00000581444.5_1_18:20956852-20964997:-|nuORF	REV__ENST00000581444.5_1_18:20956852-20964997:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.83203125	2	553.830706	1105.64686	1.4061	0.00077877	-2.5843	-0.0014313	-1.1781	-0.00065248	553.8291816775361	139.45	3.0735	137.95	136.76	139.84	-1.4952					150	61	3	0	0	0	0.68424	1	13544	13544		21.96	2.5999	1	110800	+		48741	27825	40443	40470	52288	52288					0.09826167305527633
RKRGGAAL	8	Unmodified	_RKRGGAAL_					0	0	0			REV__ENST00000358901.10_1_9:35072401-35072665:-|nuORF	REV__ENST00000358901.10_1_9:35072401-35072665:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	414.7609558105469	2	414.761761	827.508969	-1.3763	-0.00057084	1.469	0.0006093	0.092716	3.8455E-05	414.7623056204016	140.83	3.4972	139.8	137.66	141.16	-1.0339					138	70	4	0	0	0	0.74679	1	11663	11663		28.254	0	1	1080700	+		48742	24807	40444	40471	52289	52289					0.08831463776903092
RKRGHLRTL	9	Unmodified	_RKRGHLRTL_					0	0	0		ENST00000469796.6_1_X:108926864-108976514:-|nuORF	ENST00000469796.6_1_X:108926864-108976514:-|nuORF	ENST00000469796.6_1_X:108926864-108976514:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	568.853515625	2	568.859798	1135.70504	-7.0364	-0.0040027	-4.0143	-0.0022836	-11.051	-0.0062863	568.857375140279	161.4	1.8223	160.03	159.69	161.51	-1.3692					107	37	5	0	0	0	0.63422	1	14007	14007		27.882	1.1893	1	827460			48743	12351	40445	40472	52290	52290					0.14261848950809508
RKRGRKSK	8	Unmodified	_RKRGRKSK_					0	0	0			REV__ENSG00000102974|ENST00000264010|CTCF	REV__ENSG00000102974|ENST00000264010|CTCF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.302978515625	2	508.333416	1014.65228	-0.57994	-0.0002948	-3.7378	-0.0019	-4.3177	-0.0021948	508.3319922320844	37.874	0.22203	37.874	37.761	37.983	0					7	4	3	0	0	0	0.028476	1	2122	2122		45.952	0	1	124500	+		48744	17585	40446	40473	52291	52291					0.14553890887998477
RKRHRKHTQQR	11	Unmodified	_RKRHRKHTQQR_					0	0	0		ENSG00000090776|ENST00000204961|EFNB1	ENSG00000090776|ENST00000204961|EFNB1	ENSG00000090776|ENST00000204961|EFNB1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.95550537109375	3	510.969807	1529.88759	-1.8922	-0.00096685	-1.4573	-0.00074462	-3.3494	-0.0017115	510.96936311211715	49.025	0.57228	45.884	45.78	46.352	-3.1416					17	10	2	0	0	0	0.02625	1	2771	2771		9.2118	0	1	16100			48745	1847	40447	40474	52292	52292					0.1438437634544698
RKRILVCGLGL	11	Unmodified	_RKRILVCGLGL_					0	0	0			REV__nc|ENSG00000198931|P07741-2|APRT	REV__nc|ENSG00000198931|P07741-2|APRT	MULTI-MSMS	OvCa9_classI_Rep4_	4	614.3854370117188	2	614.389542	1226.76453	-5.2638	-0.003234	-1.8967	-0.0011653	-7.1605	-0.0043993	614.3881829227306	157.6	1.278	156.06	155.71	156.98	-1.545					89	35	4	0	0	0	0.72493	1	15626	15626		16.473	0.83134	1	332270	+		48746	23096	40448	40475	52293	52293					0.16021983849964272
RKRITGRK	8	Unmodified	_RKRITGRK_					0	0	0		ENST00000520044.5_1_8:67579912-67592186:+|nuORF;nc|nan|Q96CB5|C8orf44	ENST00000520044.5_1_8:67579912-67592186:+|nuORF	ENST00000520044.5_1_8:67579912-67592186:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.83746337890625	2	507.835791	1013.65703	1.5913	0.0008081	0.71678	0.000364	2.308	0.0011721	507.8360989059997	28.421	0.96409	25.712	25.443	26.407	-2.7097					44	20	3	0	0	0	0.75661	1	612	612		19.36	0	1	67466			48747	13097	40449	40476	52294	52294					0.15074775030745968
RKRKELELQ	9	Unmodified	_RKRKELELQ_					0	0	0		ENST00000483189.1_1_13:111893629-111928079:+|nuORF;nc|ENSG00000102606|Q14155-6|ARHGEF7;nc|ENSG00000102606|Q14155-1|ARHGEF7;nc|ENSG00000102606|Q14155-5|ARHGEF7;nc|ENSG00000102606|Q14155-2|ARHGEF7;nc|ENSG00000102606|Q14155-3|ARHGEF7;nc|ENSG00000102606|Q14155|ARHGEF7;ENSG00000102606|ENST00000646102|ARHGEF7	ENST00000483189.1_1_13:111893629-111928079:+|nuORF	ENST00000483189.1_1_13:111893629-111928079:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	600.3640747070312	2	600.364579	1198.7146	0.04631	2.7803E-05	-0.88449	-0.00053102	-0.83818	-0.00050321	600.3642228703784	30.358	0.59595	30.358	29.986	30.582	0					28	11	3	0	0	0	0.28108	1	1164	1164		58.23	5.141	1	191100			48748	2247	40450	40477	52295	52295					0.12319572445653648
RKRKELELQ	9	Unmodified	_RKRKELELQ_					0	0	0		ENST00000483189.1_1_13:111893629-111928079:+|nuORF;nc|ENSG00000102606|Q14155-6|ARHGEF7;nc|ENSG00000102606|Q14155-1|ARHGEF7;nc|ENSG00000102606|Q14155-5|ARHGEF7;nc|ENSG00000102606|Q14155-2|ARHGEF7;nc|ENSG00000102606|Q14155-3|ARHGEF7;nc|ENSG00000102606|Q14155|ARHGEF7;ENSG00000102606|ENST00000646102|ARHGEF7	ENST00000483189.1_1_13:111893629-111928079:+|nuORF	ENST00000483189.1_1_13:111893629-111928079:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	600.364579	1198.7146	-1.2001	-0.00072047	1.0856	0.00065177	-0.11443	-6.87E-05	600.3652405905028	33.019	0.34512	30.31	30.075	30.42	-2.7097	-0.02439	0.001068	NaN	58.23	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11415			48749	2247	40450	40477							0.12319572445653648
RKRKKKTA	8	Unmodified	_RKRKKKTA_					0	0	0			REV__MLT1F2_dup2599|chr7:93809692-93809986:+|1.1013524509762949|0.036508973437587|4.91|377.0|16|1|anti-sense	REV__MLT1F2_dup2599|chr7:93809692-93809986:+|1.1013524509762949|0.036508973437587|4.91|377.0|16|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.302978515625	2	508.345992	1014.67743	-0.56305	-0.00028622	-2.054	-0.0010441	-2.617	-0.0013303	508.3452598972456	37.889	0.44656	37.889	37.761	38.207	0					14	8	3	0	0	0	0.028476	1	2122	2122		38.806	0	1	87269	+		48750	28669	40451	40478	52296	52296					0.17067945690564557
RKRKNRVSQIF	11	Unmodified	_RKRKNRVSQIF_					0	0	0			REV__ENST00000519683.1_1_5:153826347-153830818:+|nuORF	REV__ENST00000519683.1_1_5:153826347-153830818:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.95843505859375	3	477.960026	1430.85825	-5.9329	-0.0028357	4.3566	0.0020823	-1.5763	-0.00075339	478.2967649500702	159.34	2.8374	157.75	156.72	159.56	-1.5858					174	71	3	0	0	0	0.72524	1	15756	15756		12.433	2.3289	1	81225	+		48751	20998	40452	40479	52297	52297					0.16005419276598332
RKRKTKVN	8	Unmodified	_RKRKTKVN_					0	0	0		ENST00000525714.1_1_11:58736525-58746735:-|nuORF;ENST00000533954.5_1_11:58703156-58746777:-|nuORF	ENST00000525714.1_1_11:58736525-58746735:-|nuORF	ENST00000525714.1_1_11:58736525-58746735:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.7957153320312	2	515.335624	1028.6567	-0.77837	-0.00040112	-4.1143	-0.0021202	-4.8927	-0.0025214	515.3335096857695	38	1.1385	38	37.069	38.207	0					35	24	3	0	0	0	0.028476	1	2070	2070		68.787	36.832	1	282330			48752	13198	40453	40480	52298	52298					0.14351355310918734
RKRKYLLSDS	10	Unmodified	_RKRKYLLSDS_					0	0	0			REV__nc|ENSG00000188227|Q6ZN11-3|ZNF793	REV__nc|ENSG00000188227|Q6ZN11-3|ZNF793	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3695068359375	2	633.369861	1264.72517	-4.8824	-0.0030923	3.9881	0.002526	-0.89421	-0.00056637	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.74374	1	13129	13129		25.574	5.5773	1	765700	+		48753	22700	40454	40481	52299	52299					0.10339555100085818
RKRLAAGKT	9	Unmodified	_RKRLAAGKT_					0	0	0			REV__ENST00000492495.1_1_5:149225260-149227118:+|nuORF	REV__ENST00000492495.1_1_5:149225260-149227118:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	500.8246765136719	2	500.82235	999.630147	1.0654	0.00053359	2.8852	0.001445	3.9507	0.0019786	500.82361488266986	63.401	2.6056	60.367	60.113	62.718	-3.0339					105	51	3	0	0	0	0.63422	1	2409	2409		27.882	1.0861	1	62518	+		48754	20443	40455	40482	52300	52300					0.13031666419556132
RKRQEELRR	9	Unmodified	_RKRQEELRR_					0	0	0		nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2	nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	MULTI-MSMS	OvCa99_classI_Rep5	1	424.25311279296875	3	424.25321	1269.7378	0.12218	5.1836E-05	0.039753	1.6865E-05	0.16194	6.8702E-05	424.2531579983493	22.506	0.45595	22.506	22.333	22.789	0					27	9	4	0	0	0	0.59259	1	217	217		26.063	0	1	307390			48755	8948	40456	40483	52301	52301					0.11372011282969652
RKRQFAAI	8	Unmodified	_RKRQFAAI_					0	0	0			REV__ENSG00000166813|ENST00000394412|KIF7	REV__ENSG00000166813|ENST00000394412|KIF7	MULTI-SECPEP	OvCa9_classI_Rep3	3	495.2494201660156	2	495.303793	988.593033	1.2558	0.00062201	1.3318	0.00065963	2.5876	0.0012816	495.30430336582424	123.75	0.2047	122.71	122.62	122.82	-1.0377					5	3	2	0	0	0	0.028476	1	9572	9572		21.702	7.0382	1	6590.3	+		48756	21222	40457	40484	52302	52302					0.09827994873785428
RKRRFRLLEKH	11	Unmodified	_RKRRFRLLEKH_					0	0	0			REV__ENSG00000145888|ENST00000274576|GLRA1	REV__ENSG00000145888|ENST00000274576|GLRA1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.6240844726562	3	513.654937	1537.94298	-1.2638	-0.00064916	0.93912	0.00048238	-0.32469	-0.00016678	513.6555433174674	66.211	0.24078	62.721	62.564	62.805	-3.4902					7	4	2	0	0	0	0.026302	1	4790	4790		12.433	0.97822	1	12846	+		48757	19989	40458	40485	52303	52303					0.1955278981322408
RKRRKVRQRAK	11	Unmodified	_RKRRKVRQRAK_					0	0	0		ENST00000581170.5_1_18:5233099-5233147:-|nuORF	ENST00000581170.5_1_18:5233099-5233147:-|nuORF	ENST00000581170.5_1_18:5233099-5233147:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.3276062011719	3	494.662314	1480.96511	0.0045272	2.2394E-06	-0.69934	-0.00034594	-0.69481	-0.0003437	494.6619791880298	20.242	0.22014	20.242	20.162	20.382	0					12	7	2	0	0	0	0.026478	1	12	12		10.587	4.5858	1	42128			48758	13994	40459	40486	52304	52304					0.24387014281637676
RKRRPLTI	8	Unmodified	_RKRRPLTI_					0	0	0		ENST00000300811.7_1_19:44112133-44118443:-|nuORF	ENST00000300811.7_1_19:44112133-44118443:-|nuORF	ENST00000300811.7_1_19:44112133-44118443:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	520.346923828125	2	520.345992	1038.67743	1.3364	0.00069541	0.90287	0.00046981	2.2393	0.0011652	520.346442572037	129.27	2.7244	129.04	128.62	131.35	-0.22697					153	54	5	0	0	0	0.71369	2	12772	12772;12817		40.573	2.4077	1	2451300			48759	10176	40460	40487	52305;52306	52305					0.15963945690555192
RKRRPLTI	8	Unmodified	_RKRRPLTI_					0	0	0		ENST00000300811.7_1_19:44112133-44118443:-|nuORF	ENST00000300811.7_1_19:44112133-44118443:-|nuORF	ENST00000300811.7_1_19:44112133-44118443:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	520.34619140625	2	520.345992	1038.67743	0.45282	0.00023562	1.8105	0.00094209	2.2633	0.0011777	520.346854726536	130.58	2.2687	129.46	129.13	131.39	-1.1166					144	45	5	0	0	0	0.45246	5	10390	10354;10390;10408;10456;10468		82.305	8.3697	1	1601100			48760	10176	40460	40487	52307;52308;52309;52310;52311	52308					0.15963945690555192
RKRRPLTI	8	Unmodified	_RKRRPLTI_					0	0	0		ENST00000300811.7_1_19:44112133-44118443:-|nuORF	ENST00000300811.7_1_19:44112133-44118443:-|nuORF	ENST00000300811.7_1_19:44112133-44118443:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.3474731445312	2	520.345992	1038.67743	2.9948	0.0015583	-1.1216	-0.0005836	1.8732	0.00097472	520.3453507640438	130.94	2.3528	129.46	129.06	131.41	-1.4779					149	47	5	0	0	0	0.64026	1	12553	12553		55.504	5.4797	1	2675200			48761	10176	40460	40487	52312	52312					0.15963945690555192
RKRRRRAPHRS	11	Unmodified	_RKRRRRAPHRS_					0	0	0			REV__ENST00000584379.5_1_17:62291378-62291564:-|nuORF	REV__ENST00000584379.5_1_17:62291378-62291564:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.6343078613281	3	492.63828	1474.89301	-6.2177	-0.0030631	-1.8139	-0.00089359	-8.0315	-0.0039566	492.63727713835067	161.54	1.8887	159.91	158.52	160.4	-1.6239					108	42	3	0	0	0	0.72575	1	15977	15977		5.6988	2.0797	1	60954	+		48762	27840	40461	40488	52313	52313					0.1745609992790378
RKRRSLHKAM	10	Unmodified	_RKRRSLHKAM_					0	0	0		tr|A0A7D6W3K8|A0A7D6W3K8_9CLOTAspartyl-phosphatephosphataseSpo0EfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10300PE=4SV=1;tr|A0A7D7A0I5|A0A7D7A0I5_9CLOTAspartyl-phosphatephosphataseSpo0EfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10110PE=4SV=1	tr|A0A7D6W3K8|A0A7D6W3K8_9CLOTAspartyl-phosphatephosphataseSpo0EfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10300PE=4SV=1	tr|A0A7D6W3K8|A0A7D6W3K8_9CLOTAspartyl-phosphatephosphataseSpo0EfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10300PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8811645507812	2	641.88549	1281.75643	-4.6434	-0.0029805	0.11844	7.6024E-05	-4.5249	-0.0029045	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.81992	2	15728	15728;15754		16.473	2.336	1	543390			48763	35455	40462	40489	52314;52315	52314					0.1268184965317687
RKRRSLHKAM	10	Unmodified	_RKRRSLHKAM_					0	0	0		tr|A0A7D6W3K8|A0A7D6W3K8_9CLOTAspartyl-phosphatephosphataseSpo0EfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10300PE=4SV=1;tr|A0A7D7A0I5|A0A7D7A0I5_9CLOTAspartyl-phosphatephosphataseSpo0EfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10110PE=4SV=1	tr|A0A7D6W3K8|A0A7D6W3K8_9CLOTAspartyl-phosphatephosphataseSpo0EfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10300PE=4SV=1	tr|A0A7D6W3K8|A0A7D6W3K8_9CLOTAspartyl-phosphatephosphataseSpo0EfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10300PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8821411132812	2	641.88549	1281.75643	-5.3554	-0.0034376	0.82012	0.00052643	-4.5353	-0.0029111	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.69073	2	13222	13122;13222		31.53	5.9558	1	804890			48764	35455	40462	40489	52316;52317	52317					0.1268184965317687
RKRVARVC	8	Unmodified	_RKRVARVC_					0	0	0		ENST00000336180.6_1_7:73498316-73500123:+|nuORF	ENST00000336180.6_1_7:73498316-73500123:+|nuORF	ENST00000336180.6_1_7:73498316-73500123:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	494.3016052246094	2	494.30327	986.591987	-5.5844	-0.0027604	0.61897	0.00030596	-4.9655	-0.0024544	494.3034903870968	153.96	1.4815	152.95	152.62	154.1	-1.0076					78	30	5	0	0	0	0.73288	3	13186	13186;13204;13216		35.201	7.3185	1	602630			48765	10509	40463	40490	52318;52319;52320	52318					0.09815457233241887
RKRVSSSG	8	Unmodified	_RKRVSSSG_					0	0	0		ENSG00000213047|ENST00000620048|DENND1B	ENSG00000213047|ENST00000620048|DENND1B	ENSG00000213047|ENST00000620048|DENND1B	MULTI-MSMS	OvCa99_classI_Rep5	1	438.7562561035156	2	438.754133	875.493713	0.81086	0.00035577	4.0551	0.0017792	4.8659	0.002135	438.7557077083029	60.261	0.94561	60.261	60.039	60.984	0					47	22	3	0	0	0	0.76021	1	5270	5270		20.947	0	1	3135700			48766	9113	40464	40491	52321	52321					0.05098552189053862
RKRWFTMDDRR	11	Unmodified	_RKRWFTMDDRR_					0	0	0		ENST00000478000.5_1_7:938560-944975:-|nuORF;nc|ENSG00000105963|O75689-3|ADAP1;ENSG00000105963|ENST00000265846|ADAP1;nc|ENSG00000105963|O75689-2|ADAP1	ENST00000478000.5_1_7:938560-944975:-|nuORF	ENST00000478000.5_1_7:938560-944975:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.814453125	3	522.940526	1565.79975	1.0555	0.00055195	1.7644	0.00092267	2.8199	0.0014746	523.2760218111755	107.09	0.38313	107.09	106.93	107.31	0					12	8	2	0	0	0	0.026472	1	12070	12070		12.433	4.0256	1	394810			48767	2517	40465	40492	52322	52322					0.03947994639815988
RKRWTNGKP	9	Unmodified	_RKRWTNGKP_					0	0	0			REV__ENST00000463708.1_1_3:48642027-48647053:-|nuORF	REV__ENST00000463708.1_1_3:48642027-48647053:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	571.8311157226562	2	571.830706	1141.64686	-0.059094	-3.3792E-05	-1.6735	-0.00095693	-1.7325	-0.00099072	571.829735182503	57.073	1.1146	57.073	56.744	57.859	0					65	25	6	0	0	0	0.37135	1	4814	4814		54.776	0	1	8209600	+		48768	26133	40466	40493	52323	52323					0.08170167305502218
RKRYLKRRGQA	11	Unmodified	_RKRYLKRRGQA_					0	0	0		ENSG00000065600|ENST00000261455|PACC1;nc|ENSG00000065600|Q9H813-2|PACC1	ENSG00000065600|ENST00000261455|PACC1	ENSG00000065600|ENST00000261455|PACC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.9578857421875	3	477.963771	1430.86948	-5.9329	-0.0028357	-3.4776	-0.0016622	-9.4105	-0.0044979	478.2967649500702	159.34	2.8374	157.75	156.72	159.56	-1.5858					174	71	3	0	0	0	0.72545	1	15711	15711		9.6461	0.43434	1	81225			48769	1332	40467	40494	52324	52324					0.17128241370733122
RKSFKNIKSN	10	Unmodified	_RKSFKNIKSN_					0	0	0		tr|A0A7D6VNW0|A0A7D6VNW0_9CLOTLTAsynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19795PE=3SV=1	tr|A0A7D6VNW0|A0A7D6VNW0_9CLOTLTAsynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19795PE=3SV=1	tr|A0A7D6VNW0|A0A7D6VNW0_9CLOTLTAsynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19795PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	611.3551025390625	2	611.356754	1220.69895	-3.7398	-0.0022864	2.6738	0.0016346	-1.0661	-0.00065175	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.6349	2	15148	15148;15371		37.812	8.662	1	331570			48770	34733	40468	40495	52325;52326	52325					0.09743285928607293
RKSFKNIKSN	10	Unmodified	_RKSFKNIKSN_					0	0	0		tr|A0A7D6VNW0|A0A7D6VNW0_9CLOTLTAsynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19795PE=3SV=1	tr|A0A7D6VNW0|A0A7D6VNW0_9CLOTLTAsynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19795PE=3SV=1	tr|A0A7D6VNW0|A0A7D6VNW0_9CLOTLTAsynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19795PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3553466796875	2	611.356754	1220.69895	-3.1571	-0.0019301	2.0725	0.001267	-1.0847	-0.00066312	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.66721	3	12768	12726;12768;12860		34.173	4.7437	1	666990			48771	34733	40468	40495	52327;52328;52329	52328					0.09743285928607293
RKSFKNIKSN	10	Unmodified	_RKSFKNIKSN_					0	0	0		tr|A0A7D6VNW0|A0A7D6VNW0_9CLOTLTAsynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19795PE=3SV=1	tr|A0A7D6VNW0|A0A7D6VNW0_9CLOTLTAsynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19795PE=3SV=1	tr|A0A7D6VNW0|A0A7D6VNW0_9CLOTLTAsynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19795PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3515625	2	611.356754	1220.69895	-1.5159	-0.00092675	0.36465	0.00022293	-1.1512	-0.00070382	611.3567832501896	147.85	3.7824	146.41	144.39	148.17	-1.4351					181	75	4	0	0	0	0.59317	1	14573	14573		42.864	8.6917	1	164640			48772	34733	40468	40495	52330	52330					0.09743285928607293
RKSGRSLSL	9	Unmodified	_RKSGRSLSL_					0	0	0		ENST00000475229.2_1_1:1663720-1663897:-|nuORF	ENST00000475229.2_1_1:1663720-1663897:-|nuORF	ENST00000475229.2_1_1:1663720-1663897:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	502.29205322265625	2	502.30399	1002.59343	-1.3292	-0.00066765	3.5152	0.0017657	2.1861	0.0010981	502.3058273650698	121.39	0.84133	121.19	120.95	121.79	-0.19719					29	16	3	0	0	0	0.027462	1	11761	11761		47.657	8.8512	1	35137			48773	12445	40469	40496	52331	52331					0.09223369802998604
RKSGSLMSTL	10	Oxidation (M)	_RKSGSLM(Oxidation (M))STL_		RKSGSLM(1)STL		RKSGSLM(50)STL	0	0	1			REV__ENSG00000165832|ENST00000298746|TRUB1	REV__ENSG00000165832|ENST00000298746|TRUB1	MULTI-MSMS	OvCa9_classI_Rep2	2	548.295166015625	2	548.294973	1094.57539	-1.4493	-0.00079464	2.186	0.0011986	0.73669	0.00040393	548.2961982412694	34.285	4.3001	31.575	31.119	35.419	-2.7097					197	86	6	0	0	0	0.53807	1	1457	1457		49.536	16.724	1	2359300	+		48774	21127	40470	40497	52332	52332		490			0.03188866765981402
RKSLHLWWN	9	Unmodified	_RKSLHLWWN_					0	0	0		ENST00000373696.7_1_X:70823497-70824427:+|nuORF	ENST00000373696.7_1_X:70823497-70824427:+|nuORF	ENST00000373696.7_1_X:70823497-70824427:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	413.8945617675781	3	413.896363	1238.66726	-0.10168	-4.2085E-05	-3.7733	-0.0015617	-3.875	-0.0016038	413.89479072541457	36.554	1.5941	36.554	36.257	37.851	0					80	34	5	0	0	0	0.56189	1	1950	1950		36.447	3.4074	1	3553700			48775	11015	40471	40498	52333	52333					0.05747337965317456
RKSSAGSLVP	10	Unmodified	_RKSSAGSLVP_					0	0	0		ENST00000535466.5_1_12:6898715-6908178:+|nuORF	ENST00000535466.5_1_12:6898715-6908178:+|nuORF	ENST00000535466.5_1_12:6898715-6908178:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	501.291015625	2	501.290548	1000.56654	-0.80197	-0.00040202	0.50048	0.00025089	-0.30149	-0.00015113	501.2906816095173	135.63	4.8104	135.4	133.71	138.52	-0.22697					221	98	3	0	0	0	0.82648	1	13704	13704		15.642	0	1	70595			48776	13378	40472	40499	52334	52334					0.06628261191804086
RKTAKAKEEN	10	Unmodified	_RKTAKAKEEN_					0	0	0		ENSG00000133665|ENST00000256039|DYDC2	ENSG00000133665|ENST00000256039|DYDC2	ENSG00000133665|ENST00000256039|DYDC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.3096923828125	2	587.830569	1173.64658	1.8019	0.0010592	3.385	0.0019898	5.1869	0.003049	588.334861520325	81.936	0.36565	81.936	81.776	82.141	0					13	8	2	0	0	0	0.026891	1	8453	8453		31.53	0	1	267020			48777	4231	40473	40500	52335	52335					0.06670702795008765
RKTAPKAKE	9	Unmodified	_RKTAPKAKE_					0	0	0		ENST00000606975.1_1_8:163470-182153:-|nuORF	ENST00000606975.1_1_8:163470-182153:-|nuORF	ENST00000606975.1_1_8:163470-182153:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	514.8143920898438	2	514.81419	1027.61383	2.5746	0.0013254	-2.6896	-0.0013847	-0.11509	-5.9251E-05	514.8126670332618	27.295	1.0989	24.585	24.394	25.493	-2.7097					55	24	4	0	0	0	0.46356	1	462	462		45.972	0	1	264850			48778	14279	40474	40501	52336	52336					0.1011254046279646
RKTGRILGV	9	Unmodified	_RKTGRILGV_					0	0	0		tr|A0A553SNE0|A0A553SNE0_NIACIDehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_24270PE=3SV=1	tr|A0A553SNE0|A0A553SNE0_NIACIDehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_24270PE=3SV=1	tr|A0A553SNE0|A0A553SNE0_NIACIDehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_24270PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	500.3245544433594	2	500.324725	998.634898	-1.1997	-0.00060025	1.1216	0.00056117	-0.0781	-3.9076E-05	500.32522005159564	34.687	0.46605	34.687	34.491	34.957	0					25	9	4	0	0	0	0.53483	1	1693	1693		39.253	0.44669	1	290090			48779	33917	40475	40502	52337	52337					0.1355255056232636
RKTKFRLVC	9	Unmodified	_RKTKFRLVC_					0	0	0			REV__tr|A0A7D7A0S0|A0A7D7A0S0_9CLOTPyridoxamine5'-phosphateoxidasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12260PE=4SV=1	REV__tr|A0A7D7A0S0|A0A7D7A0S0_9CLOTPyridoxamine5'-phosphateoxidasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12260PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8421630859375	2	575.84751	1149.68047	-3.1773	-0.0018296	-4.1658	-0.0023988	-7.3431	-0.0042285	575.8447773729116	141.87	3.8997	140.86	138.96	142.86	-1.0106					243	78	6	0	0	0	0.67509	1	11955	11955		23.042	5.6775	1	129610	+		48780	32454	40476	40503	52338	52338					0.11161452753049161
RKTLGTLASA	10	Unmodified	_RKTLGTLASA_					0	0	0			REV__ENSG00000164880|ENST00000404767|INTS1	REV__ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	OvCa9_classI_Rep2	2	509.3050231933594	2	509.306198	1016.59784	1.4745	0.00075099	-1.3857	-0.00070575	0.08884	4.5247E-05	509.3053171853482	28.8	0.40529	26.09	25.952	26.358	-2.7097					15	8	2	0	0	0	0.86416	1	640	640		10.866	0.6003	1	14964	+		48781	21030	40477	40504	52339	52339					0.09020834225896124
RKTRVEAVPR	10	Unmodified	_RKTRVEAVPR_					0	0	0			REV__ENST00000492555.5_1_3:52568505-52568682:-|nuORF	REV__ENST00000492555.5_1_3:52568505-52568682:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3695678710938	2	606.370195	1210.72584	-3.14	-0.001904	2.1543	0.0013063	-0.98567	-0.00059768	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.79213	1	15100	15100		19.997	2.6318	1	257720	+		48782	26693	40478	40505	52340	52340					0.12890394539772387
RKTRVLTP	8	Unmodified	_RKTRVLTP_					0	0	0		tr|A0A553SQK6|A0A553SQK6_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_07830PE=4SV=1	tr|A0A553SQK6|A0A553SQK6_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_07830PE=4SV=1	tr|A0A553SQK6|A0A553SQK6_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_07830PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	485.8135070800781	2	485.811451	969.608348	1.4031	0.00068165	3.1456	0.0015282	4.5488	0.0022098	485.8128285577155	147.57	4.5874	147.57	147.11	151.7	0					195	92	4	0	0	0	0.48084	1	17304	17304		79.451	8.0731	1	1725900			48783	34172	40479	40506	52341	52341					0.12232861670975126
RKTVVNVRE	9	Unmodified	_RKTVVNVRE_					0	0	0		tr|A0A7D6VWU7|A0A7D6VWU7_9CLOTTipASantibiotic-recognitiondomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05545PE=4SV=1	tr|A0A7D6VWU7|A0A7D6VWU7_9CLOTTipASantibiotic-recognitiondomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05545PE=4SV=1	tr|A0A7D6VWU7|A0A7D6VWU7_9CLOTTipASantibiotic-recognitiondomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05545PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	550.8289184570312	2	550.830372	1099.64619	-1.0356	-0.00057041	0.70662	0.00038923	-0.32893	-0.00018119	550.8306545047046	34.381	0.8918	31.671	31.415	32.306	-2.7097					29	17	2	0	0	0	0.62335	1	1321	1321		29.17	1.0886	1	88854			48784	35261	40480	40507	52342	52342					0.10035327865784893
RKVELLAL	8	Unmodified	_RKVELLAL_					0	0	0			REV__ENST00000463670.5_1_1:156255017-156255322:+|nuORF	REV__ENST00000463670.5_1_1:156255017-156255322:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.310546875	2	471.310752	940.606951	0.63501	0.00029929	-0.99591	-0.00046938	-0.36089	-0.00017009	471.31024904441927	22.362	2.2823	21.024	20.523	22.806	-1.3386					219	69	5	0	0	0	0.60486	2	378	330;378		62.978	10.679	1	1692100	+		48785	20839	40481	40508	52343;52344	52344					0.13427227582224077
RKVERLLV	8	Unmodified	_RKVERLLV_					0	0	0			REV__ENSG00000176177|ENST00000325157|ENTHD1	REV__ENSG00000176177|ENST00000325157|ENTHD1	MULTI-MSMS	OvCa99_classI_Rep5	1	506.83428955078125	2	506.834926	1011.6553	-0.90896	-0.00046069	-0.10194	-5.1666E-05	-1.0109	-0.00051236	506.83492413271784	37.046	0.64259	37.046	36.796	37.438	0					50	13	5	0	0	0	0.61436	1	2014	2014		60.972	5.4677	1	7390100	+		48786	21936	40482	40509	52345	52345					0.14993721222140266
RKVLLEAI	8	Unmodified	_RKVLLEAI_					0	0	0		ENST00000424478.5_1_14:45565874-45584113:+|nuORF;ENSG00000185246|ENST00000355765|PRPF39;nc|ENSG00000185246|Q86UA1-2|PRPF39;ENST00000554785.1_1_14:45579308-45583868:+|nuORF	ENST00000424478.5_1_14:45565874-45584113:+|nuORF	ENST00000424478.5_1_14:45565874-45584113:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	471.31060791015625	2	471.310752	940.606951	-1.3467	-0.0006347	0.9748	0.00045943	-0.37187	-0.00017526	471.31115558776486	33.805	2.3785	31.096	30.823	33.201	-2.7097					116	47	5	0	0	0	0.64026	1	1282	1282		55.504	0	1	1913400			48787	8237	40483	40510	52346	52346					0.13427227582246815
RKVLQIIPES	10	Unmodified	_RKVLQIIPES_					0	0	0		ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	ENSG00000164961|ENST00000318410|WASHC5	MULTI-MSMS	OvCa9_classI_Rep3	3	591.8636474609375	2	591.86388	1181.71321	0.72408	0.00042856	0.6408	0.00037927	1.3649	0.00080783	591.8641978183085	65.182	2.2339	62.236	61.844	64.078	-2.9459					105	43	4	0	0	0	0.71173	1	2654	2654		29.17	2.4771	1	184170			48788	6506	40484	40511	52347	52347					0.12961938356897917
RKVLWQVVP	9	Unmodified	_RKVLWQVVP_					0	0	0			REV__ENSG00000125633|ENST00000376300|CCDC93	REV__ENSG00000125633|ENST00000376300|CCDC93	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.83251953125	2	562.850576	1123.6866	0.8019	0.00045135	3.2836	0.0018482	4.0855	0.0022995	562.8524780603356	67.354	0.74724	67.354	67.055	67.803	0					31	18	3	0	0	0	0.027462	1	6328	6328		35.618	0	1	747200	+		48789	18733	40485	40512	52348	52348					0.12970294256228954
RKVNPAAAL	9	Unmodified	_RKVNPAAAL_					0	0	0		nc|ENSG00000156697|Q9BVJ6-2|UTP14A;nc|ENSG00000156697|Q9BVJ6-3|UTP14A;ENSG00000156697|ENST00000394422|UTP14A	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	nc|ENSG00000156697|Q9BVJ6-2|UTP14A	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.29095458984375	2	470.290351	938.566149	0.052113	2.4508E-05	-0.67944	-0.00031953	-0.62733	-0.00029503	470.28999558575936	46.445	1.893	43.372	43.03	44.923	-3.0724					85	36	4	0	0	0	0.42057	1	2426	2426		50.025	2.1089	1	1576300			48790	5854	40486	40513	52349	52349					0.09440886262598269
RKVRPIGT	8	Unmodified	_RKVRPIGT_					0	0	0			REV__ENSG00000073711|ENST00000264977|PPP2R3A	REV__ENSG00000073711|ENST00000264977|PPP2R3A	MULTI-MSMS	OvCa9_classI_Rep2	2	463.7975769042969	2	463.798343	925.582134	0.21037	9.7568E-05	-1.0086	-0.0004678	-0.79827	-0.00037024	463.7978667804196	70.561	4.2201	67.99	67.714	71.934	-2.5707					173	80	4	0	0	0	0.75241	1	5638	5638		25.45	1.2474	1	2590100	+		48791	16939	40487	40514	52350	52350					0.11636592499519338
RKVTGGPRT	9	Unmodified	_RKVTGGPRT_					0	0	0		ENST00000511185.5_1_4:2814082-2826487:+|nuORF;ENST00000506932.1_1_4:2825262-2826487:+|nuORF;ENST00000511663.5_1_4:2811506-2826487:+|nuORF;ENST00000511237.5_1_4:2795936-2826487:+|nuORF	ENST00000511185.5_1_4:2814082-2826487:+|nuORF	ENST00000511185.5_1_4:2814082-2826487:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.2907409667969	2	486.290882	970.567212	0.74732	0.00036342	-0.83465	-0.00040588	-0.087328	-4.2467E-05	486.2903083243787	33.018	0.89401	30.323	30.053	30.947	-2.6954					37	17	3	0	0	0	0.69913	1	839	839		18.262	0.89712	1	80760			48792	12981	40488	40515	52351	52351					0.08075100631526766
RKWRKGPL	8	Unmodified	_RKWRKGPL_					0	0	0			REV__HMGB3|p.V157Efs*68|1|0.04|ENSG00000029993|chrX:150987780-150987781|-/AAAAGATACTTAAAAGATGGCAATACCTC|frameshift_variant	REV__HMGB3|p.V157Efs*68|1|0.04|ENSG00000029993|chrX:150987780-150987781|-/AAAAGATACTTAAAAGATGGCAATACCTC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.3026123046875	2	520.827435	1039.64032	-1.6879	-0.00087908	0.75341	0.0003924	-0.93445	-0.00048669	520.8275516615569	50.586	0.41508	47.412	47.205	47.62	-3.1734					13	7	3	0	0	0	0.028476	1	2895	2895		33.516	13.034	1	15778	+		48793	28287	40489	40516	52352	52352					0.12208274144791176
RKWTHLSTN	9	Unmodified	_RKWTHLSTN_					0	0	0			REV__ENST00000267085.8_2_12:53573752-53574378:-|nuORF	REV__ENST00000267085.8_2_12:53573752-53574378:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	570.8216552734375	2	571.806897	1141.59924	-1.5482	-0.00088526	2.2274	0.0012736	0.67922	0.00038839	571.8059594582385	83.913	0.57078	82.367	82.122	82.693	-1.5462					19	10	3	0	0	0	0.027455	1	7183	7183		60.972	13.315	1	14335	+		48794	24048	40490	40517	52353	52353					0.03410468314677928
RKYKVEKIM	9	Unmodified	_RKYKVEKIM_					0	0	0		tr|A0A7D6ZI79|A0A7D6ZI79_9CLOTPyridinium-3,5-bisthiocarboxylicacidmononucleotidenickelinsertionproteinOS=ClostridiumintestinaleOX=36845GN=larCPE=3SV=1	tr|A0A7D6ZI79|A0A7D6ZI79_9CLOTPyridinium-3,5-bisthiocarboxylicacidmononucleotidenickelinsertionproteinOS=ClostridiumintestinaleOX=36845GN=larCPE=3SV=1	tr|A0A7D6ZI79|A0A7D6ZI79_9CLOTPyridinium-3,5-bisthiocarboxylicacidmononucleotidenickelinsertionproteinOS=ClostridiumintestinaleOX=36845GN=larCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.856689453125	2	597.855001	1193.69545	-1.5377	-0.00091935	3.8871	0.0023239	2.3493	0.0014045	597.8570606153338	148.28	4.8676	146.85	145.38	150.25	-1.435					291	102	5	0	0	0	0.51177	1	14522	14522		41.427	18.384	1	767860			48795	35608	40491	40518	52354	52354					0.10634899830392897
RKYLKRDWCKT	11	Unmodified	_RKYLKRDWCKT_					0	0	0		nc|ENSG00000166923|O60565-2|GREM1;ENSG00000166923|ENST00000651154|GREM1	nc|ENSG00000166923|O60565-2|GREM1	nc|ENSG00000166923|O60565-2|GREM1	MULTI-MSMS	OvCa99_classI_Rep5	1	499.9453125	3	499.610006	1495.80819	-0.67218	-0.00033583	1.8003	0.00089946	1.1281	0.00056363	499.61096854493144	25.167	0.85493	25.167	24.938	25.793	0					54	16	5	0	0	0	0.72477	1	562	562		18.531	5.0231	1	2207200			48796	6734	40492	40519	52355	52355					0.08011548556419257
RKYLVKVPTN	10	Unmodified	_RKYLVKVPTN_					0	0	0		tr|A0A553ST40|A0A553ST40_NIACILowtemperaturerequirementproteinAOS=NialliacirculansOX=1397GN=CEQ21_04330PE=4SV=1	tr|A0A553ST40|A0A553ST40_NIACILowtemperaturerequirementproteinAOS=NialliacirculansOX=1397GN=CEQ21_04330PE=4SV=1	tr|A0A553ST40|A0A553ST40_NIACILowtemperaturerequirementproteinAOS=NialliacirculansOX=1397GN=CEQ21_04330PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	609.3739624023438	2	609.371872	1216.72919	0.56552	0.00034461	2.5174	0.0015341	3.083	0.0018787	609.3731861911076	164.45	1.5748	164.45	163.72	165.3	0					107	58	2	0	0	0	0.78463	3	19192	19192;19205;19215		20.947	1.8434	1	34749			48797	34452	40493	40520	52356;52357;52358	52356					0.12949644593822995
RKYVESTF	8	Unmodified	_RKYVESTF_					0	0	0			REV__tr|A0A7D6VMG6|A0A7D6VMG6_9CLOTDihydropyrimidinaseOS=ClostridiumintestinaleOX=36845GN=hydAPE=3SV=1	REV__tr|A0A7D6VMG6|A0A7D6VMG6_9CLOTDihydropyrimidinaseOS=ClostridiumintestinaleOX=36845GN=hydAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.317626953125	2	515.271824	1028.5291	-0.99167	-0.00051098	-0.036984	-1.9057E-05	-1.0287	-0.00053004	515.2715523628608	55.681	0.35384	52.387	52.11	52.464	-3.2944					11	6	2	0	0	0	0.028476	1	3503	3503		26.796	6.3143	1	43817	+		48798	31133	40494	40521	52359	52359					0.015971699261854155
RLAADRVH	8	Unmodified	_RLAADRVH_					0	0	0		nc|ENSG00000150477|Q86T90-4|KIAA1328;nc|ENSG00000150477|Q86T90-3|KIAA1328;ENST00000592611.5_1_18:34415331-34809581:+|nuORF;ENST00000590617.5_1_18:34415331-34802187:+|nuORF;nc|ENSG00000150477|Q86T90-2|KIAA1328;ENSG00000150477|ENST00000280020|KIAA1328	nc|ENSG00000150477|Q86T90-4|KIAA1328	nc|ENSG00000150477|Q86T90-4|KIAA1328	MULTI-MSMS	OvCa9_classI_Rep4_	4	469.2700500488281	2	469.26995	936.525347	0.77662	0.00036444	-0.81534	-0.00038261	-0.03872	-1.817E-05	469.26939893955694	38.358	1.3386	35.432	35.156	36.495	-2.9264					51	26	3	0	0	0	0.73205	1	1504	1504		35.618	0	1	270500			48799	5509	40495	40522	52360	52360					0.0545454494298383
RLAAEPQS	8	Unmodified	_RLAAEPQS_					0	0	0			REV__ENSG00000172478|ENST00000388934|MAB21L4	REV__ENSG00000172478|ENST00000388934|MAB21L4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.7859191894531	2	436.235242	870.45593	1.0537	0.00045965	-1.6747	-0.00073055	-0.621	-0.0002709	436.2343617934645	110.89	0.89416	109.29	108.96	109.86	-1.6011					26	16	2	0	0	0	0.028476	1	10264	10264		20.947	6.8098	1	45902	+		48800	21703	40496	40523	52361	52361					0.015520412035698428
RLAAVEAQL	9	Unmodified	_RLAAVEAQL_					0	0	0			REV__ENSG00000186185|ENST00000593135|KIF18B	REV__ENSG00000186185|ENST00000593135|KIF18B	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.78887939453125	2	485.787641	969.56073	-0.19391	-9.4198E-05	-0.037505	-1.8219E-05	-0.23141	-0.00011242	485.7874489405498	76.424	1.7684	73.485	73.128	74.896	-2.9389					74	36	4	0	0	0	0.27001	1	6076	6076		66.429	3.123	1	780750	+		48801	22563	40497	40524	52362	52362					0.07473162680128098
RLADDLNEKI	10	Unmodified	_RLADDLNEKI_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;ENSG00000186260|ENST00000571589|MRTFB;nc|ENSG00000186260|Q9ULH7-2|MRTFB;nc|ENSG00000186260|Q9ULH7-3|MRTFB;nc|ENSG00000141052|Q8IZQ8-2|MYOCD;nc|ENSG00000141052|Q8IZQ8|MYOCD;ENSG00000141052|ENST00000425538|MYOCD;nc|ENSG00000196588|Q969V6|MRTFA;ENSG00000196588|ENST00000355630|MRTFA	nc|ENSG00000186260|Q9ULH7-4|MRTFB;nc|ENSG00000196588|Q969V6|MRTFA	nc|ENSG00000196588|Q969V6|MRTFA	MULTI-MSMS	OvCa99_classI_Rep5	1	593.8262939453125	2	593.824952	1185.63535	-0.93579	-0.00055569	0.37607	0.00022332	-0.55972	-0.00033238	593.8251758967442	70.195	0.48622	70.195	69.922	70.408	0					29	11	3	0	0	0	0.15355	1	6722	6722		101.46	34.498	1	2225000			48802	8631;8325	40498	40525	52363	52363					0.04995880700835187
RLADFNIYQV	10	Unmodified	_RLADFNIYQV_					0	0	0		ENSG00000111647|ENST00000279907|BLTP3B;nc|ENSG00000111647|A0JNW5-2|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	MULTI-SECPEP	OvCa99_classI_Rep5	1	413.5849609375	3	413.555784	1237.64552	1.0004	0.0004137	-2.1825	-0.00090259	-1.1822	-0.00048889	413.88899357012144	63.604	0.19257	63.604	63.455	63.648	0					6	4	2	0	0	0	0.027033	1	5723	5723		27.047	1.9213	1	71294			48803	2836	40499	40526	52364	52364					0.0362048842605418
RLAEDVQRA	9	Unmodified	_RLAEDVQRA_					0	0	0		ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	ENSG00000138080|ENST00000380320|EMILIN1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.2907104492188	2	529.291079	1056.56761	-0.56225	-0.00029759	0.48743	0.00025799	-0.074817	-3.96E-05	529.291254145085	38.417	0.76637	38.417	38.161	38.927	0					38	16	4	0	0	0	0.23241	1	2178	2178		70.816	19.624	1	608600			48804	4655	40500	40527	52365	52365					0.041584755607118495
RLAEELEIP	9	Unmodified	_RLAEELEIP_					0	0	0		tr|A0A553SS51|A0A553SS51_NIACISerinehydrolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_02345PE=4SV=1	tr|A0A553SS51|A0A553SS51_NIACISerinehydrolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_02345PE=4SV=1	tr|A0A553SS51|A0A553SS51_NIACISerinehydrolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_02345PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.8314819335938	2	535.298039	1068.58152	-0.30235	-0.00016185	1.2967	0.00069412	0.99435	0.00053227	535.2986224938611	35.885	0.27803	35.885	35.661	35.939	0					9	5	2	0	0	0	0.027455	1	1826	1826		26.693	2.1737	1	32918			48805	34334	40501	40528	52366	52366					0.04997708269138457
RLAEEQGLIA	10	Unmodified	_RLAEEQGLIA_					0	0	0			REV__ENSG00000158106|ENST00000289013|RHPN1	REV__ENSG00000158106|ENST00000289013|RHPN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.76708984375	2	550.308938	1098.60332	-0.24968	-0.0001374	0.043922	2.4171E-05	-0.20575	-0.00011323	550.3089881969814	71.088	0.75166	71.088	70.877	71.629	0					34	18	3	0	0	0	0.026968	1	6864	6864		36.447	0	1	2233800	+		48806	20548	40502	40529	52367	52367					0.05796513017730831
RLAEEQGLIA	10	Unmodified	_RLAEEQGLIA_					0	0	0			REV__ENSG00000158106|ENST00000289013|RHPN1	REV__ENSG00000158106|ENST00000289013|RHPN1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	550.308938	1098.60332	-0.53104	-0.00029224	1.4523	0.00079922	0.92126	0.00050698	550.3099525874228	74.35	0.61597	71.119	70.769	71.385	-3.2308	0.015654	0.0014394	NaN	36.447	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34236	+		48807	20548	40502	40529							0.05796513017730831
RLAERVVAL	9	Unmodified	_RLAERVVAL_					0	0	0		nc|ENSG00000100697|Q9UPY3-2|DICER1;ENSG00000100697|ENST00000343455|DICER1;DICER1|p.F816Ifs*18|1|0.04|ENSG00000100697|chr14:95108084-95108085|-/CCTTGAAGAT|frameshift_variant	nc|ENSG00000100697|Q9UPY3-2|DICER1	nc|ENSG00000100697|Q9UPY3-2|DICER1	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.8253173828125	2	513.824558	1025.63456	-0.13471	-6.9219E-05	-0.47194	-0.0002425	-0.60666	-0.00031171	513.8242062495449	78.535	2.5849	75.719	75.312	77.897	-2.8165					120	53	6	0	0	0	0.67509	1	6364	6364		23.042	0	1	1277200			48808	2098	40503	40530	52368	52368					0.12277130842471706
RLAETQEEI	9	Unmodified	_RLAETQEEI_					0	0	0		ENST00000463912.5_1_7:139083347-139097327:+|nuORF;nc|ENSG00000269955|Q9Y383-3|LUC7L2;nc|ENSG00000269955|Q9Y383-2|LUC7L2;ENSG00000146963|ENST00000354926|LUC7L2;nc|ENSG00000164898|Q96HJ9-2|FMC1;ENST00000490762.5_1_16:240794-277276:-|nuORF;nc|ENSG00000007392|Q9NQ29-2|LUC7L;nc|ENSG00000007392|Q9NQ29-3|LUC7L;LUC7L-DOK5|1|fusion;ENSG00000007392|ENST00000293872|LUC7L	ENST00000463912.5_1_7:139083347-139097327:+|nuORF	ENST00000463912.5_1_7:139083347-139097327:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	544.78466796875	2	544.782753	1087.55095	-0.022821	-1.2432E-05	-0.27509	-0.00014986	-0.29791	-0.0001623	544.7825378555983	58.329	0.82298	58.329	58.069	58.892	0					51	19	4	0	0	0	0.10421	1	4950	4950		96.034	13.283	1	3570900			48809	5321	40504	40531	52369	52369					0.010679298841068885
RLAETQEEI	9	Unmodified	_RLAETQEEI_					0	0	0		ENST00000463912.5_1_7:139083347-139097327:+|nuORF;nc|ENSG00000269955|Q9Y383-3|LUC7L2;nc|ENSG00000269955|Q9Y383-2|LUC7L2;ENSG00000146963|ENST00000354926|LUC7L2;nc|ENSG00000164898|Q96HJ9-2|FMC1;ENST00000490762.5_1_16:240794-277276:-|nuORF;nc|ENSG00000007392|Q9NQ29-2|LUC7L;nc|ENSG00000007392|Q9NQ29-3|LUC7L;LUC7L-DOK5|1|fusion;ENSG00000007392|ENST00000293872|LUC7L	ENST00000463912.5_1_7:139083347-139097327:+|nuORF	ENST00000463912.5_1_7:139083347-139097327:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	544.782753	1087.55095	-1.3517	-0.00073637	-1.9151	-0.0010433	-3.2668	-0.0017797	544.7814392780805	60.72	1.7741	57.949	57.501	59.275	-2.7702	-0.18994	-0.0014974	NaN	96.034	62	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91360			48810	5321	40504	40531							0.010679298841068885
RLAEVIKN	8	Unmodified	_RLAEVIKN_					0	0	0		nc|ENSG00000172046|O94966-4|USP19;nc|ENSG00000172046|O94966-3|USP19;nc|ENSG00000172046|O94966|USP19;nc|ENSG00000172046|O94966-7|USP19;ENSG00000172046|ENST00000417901|USP19;nc|ENSG00000172046|O94966-5|USP19	nc|ENSG00000172046|O94966-4|USP19	nc|ENSG00000172046|O94966-4|USP19	MULTI-SECPEP	OvCa9_classI_Rep2	2	471.2560729980469	2	471.790184	941.565815	-1.2214	-0.00057625	1.3011	0.00061386	0.079718	3.761E-05	471.79063808912963	50.403	1.2893	47.608	47.232	48.521	-2.794					55	25	3	0	0	0	0.028476	1	3358	3358		45.952	0	1	157410			48811	15179	40505	40532	52370	52370					0.0926946654275298
RLAEWKATKL	10	Unmodified	_RLAEWKATKL_					0	0	0		ENST00000398028.3_1_6:151148820-151149375:+|nuORF;ENST00000489621.1_1_3:101431466-101431589:+|nuORF;ENSG00000115539|ENST00000264254|PDCL3	ENST00000398028.3_1_6:151148820-151149375:+|nuORF	ENST00000398028.3_1_6:151148820-151149375:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	405.9111022949219	3	405.91179	1214.71354	1.4754	0.00059889	-1.1901	-0.00048309	0.28528	0.0001158	405.91123994812835	64.597	2.4902	61.872	61.545	64.036	-2.7245					125	48	5	0	0	0	0.35808	1	4939	4939		73.841	1.5979	1	608410			48812	11362	40506	40533	52371	52371					0.11477358076740529
RLAEWKATKL	10	Unmodified	_RLAEWKATKL_					0	0	0		ENST00000398028.3_1_6:151148820-151149375:+|nuORF;ENST00000489621.1_1_3:101431466-101431589:+|nuORF;ENSG00000115539|ENST00000264254|PDCL3	ENST00000398028.3_1_6:151148820-151149375:+|nuORF	ENST00000398028.3_1_6:151148820-151149375:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	405.91162109375	3	405.91179	1214.71354	2.1896	0.00088878	-2.2743	-0.00092318	-0.08475	-3.4401E-05	405.91079461880264	64.995	0.70951	62.001	61.746	62.456	-2.9933					33	13	3	0	0	0	0.56803	2	2559	2559;2564		45.908	2.2305	1	77611			48813	11362	40506	40533	52372;52373	52372					0.11477358076740529
RLAEWKATKL	10	Unmodified	_RLAEWKATKL_					0	0	0		ENST00000398028.3_1_6:151148820-151149375:+|nuORF;ENST00000489621.1_1_3:101431466-101431589:+|nuORF;ENSG00000115539|ENST00000264254|PDCL3	ENST00000398028.3_1_6:151148820-151149375:+|nuORF	ENST00000398028.3_1_6:151148820-151149375:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	405.9124450683594	3	405.91179	1214.71354	0.76156	0.00030913	-0.75872	-0.00030797	0.0028454	1.155E-06	405.9114164179148	65.57	2.1017	62.085	61.791	63.893	-3.4854					92	42	4	0	0	0	0.103	2	4737	4724;4737		112.85	47.568	1	599460			48814	11362	40506	40533	52374;52375	52375					0.11477358076740529
RLAFPLFPT	9	Unmodified	_RLAFPLFPT_					0	0	0		ENST00000314393.5_1_8:123794007-123963584:+|nuORF	ENST00000314393.5_1_8:123794007-123963584:+|nuORF	ENST00000314393.5_1_8:123794007-123963584:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	531.3106689453125	2	531.310752	1060.60695	0.041591	2.2098E-05	-0.76839	-0.00040825	-0.7268	-0.00038616	531.3100910202382	30.955	2.0189	30.955	30.632	32.651	0					86	40	3	0	0	0	0.50149	1	1230	1230		42.396	0	1	382810			48815	10322	40507	40534	52376	52376					0.07907227582245469
RLAGMTLTY	9	Unmodified	_RLAGMTLTY_					0	0	0		ENSG00000153250|ENST00000348849|RBMS1;PDK1-RBMS1|1|fusion	ENSG00000153250|ENST00000348849|RBMS1;PDK1-RBMS1|1|fusion	ENSG00000153250|ENST00000348849|RBMS1	MULTI-MSMS	OvCa9_classI_Rep2	2	513.2760620117188	2	513.276052	1024.53755	0.53721	0.00027574	-0.42435	-0.00021781	0.11286	5.7929E-05	513.275670347351	92.373	1.4473	91.205	90.866	92.313	-1.168					70	27	3	0	0	0	0.37135	1	8221	8221		54.776	12.38	1	448930			48816	5672;15487	40508	40535	52377	52377					0.02626400571148224
RLAGMTLTY	9	Unmodified	_RLAGMTLTY_					0	0	0		ENSG00000153250|ENST00000348849|RBMS1;PDK1-RBMS1|1|fusion	ENSG00000153250|ENST00000348849|RBMS1;PDK1-RBMS1|1|fusion	ENSG00000153250|ENST00000348849|RBMS1	MULTI-MSMS	OvCa9_classI_Rep3	3	513.2761840820312	2	513.276052	1024.53755	-1.0456	-0.0005367	0.9354	0.00048012	-0.11024	-5.6582E-05	513.2763754408909	93.168	1.3596	91.206	90.932	92.292	-1.9617					70	26	4	0	0	0	0.16562	4	5960	5941;5947;5954;5960		82.241	18.934	1	580040			48817	5672;15487	40508	40535	52378;52379;52380;52381	52381					0.02626400571148224
RLAGMTLTY	9	Unmodified	_RLAGMTLTY_					0	0	0		ENSG00000153250|ENST00000348849|RBMS1;PDK1-RBMS1|1|fusion	ENSG00000153250|ENST00000348849|RBMS1;PDK1-RBMS1|1|fusion	ENSG00000153250|ENST00000348849|RBMS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.27685546875	2	513.276052	1024.53755	-0.6594	-0.00033845	0.025169	1.2919E-05	-0.63423	-0.00032554	513.275866810469	93.774	1.4584	91.267	90.913	92.372	-2.5072					72	30	3	0	0	0	0.14998	3	8182	8182;8193;8206		84.916	19.112	1	563090			48818	5672;15487	40508	40535	52382;52383;52384	52382					0.02626400571148224
RLAGMTLTY	9	Unmodified	_RLAGMTLTY_					0	0	0		ENSG00000153250|ENST00000348849|RBMS1;PDK1-RBMS1|1|fusion	ENSG00000153250|ENST00000348849|RBMS1;PDK1-RBMS1|1|fusion	ENSG00000153250|ENST00000348849|RBMS1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	513.276052	1024.53755	1.5635	0.00080252	-2.4893	-0.0012777	-0.92576	-0.00047517	513.2744074462333	91.247	0.6067	91.247	90.976	91.582	0	0.015656	-0.0025182	NaN	84.916	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	439600			48819	5672;15487	40508	40535							0.02626400571148224
RLAGMTLTY	9	Oxidation (M)	_RLAGM(Oxidation (M))TLTY_		RLAGM(1)TLTY		RLAGM(82)TLTY	0	0	1		ENSG00000153250|ENST00000348849|RBMS1;PDK1-RBMS1|1|fusion	ENSG00000153250|ENST00000348849|RBMS1;PDK1-RBMS1|1|fusion	ENSG00000153250|ENST00000348849|RBMS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.2748413085938	2	521.273509	1040.53247	-1.2872	-0.00067101	0.89769	0.00046794	-0.38956	-0.00020307	521.2737458464608	73.449	1.4837	70.053	69.688	71.172	-3.3961					80	30	5	0	0	0	0.16562	2	5693	5681;5693		82.241	23.459	1	856360			48820	5672;15487	40508	40536	52385;52386	52386		184			0.013820967085393931
RLAGMTLTY	9	Oxidation (M)	_RLAGM(Oxidation (M))TLTY_					0	0	1		ENSG00000153250|ENST00000348849|RBMS1;PDK1-RBMS1|1|fusion	ENSG00000153250|ENST00000348849|RBMS1;PDK1-RBMS1|1|fusion	ENSG00000153250|ENST00000348849|RBMS1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.273509	1040.53247	0.52805	0.00027526	-0.57303	-0.0002987	-0.044977	-2.3445E-05	521.2730487890993	72.336	2.4569	69.829	69.121	71.578	-2.5071	-0.024731	-0.00049791	NaN	82.241	92	46	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	241580			48821	5672;15487	40508	40536				184			0.013820967085393931
RLAGMTLTY	9	Oxidation (M)	_RLAGM(Oxidation (M))TLTY_					0	0	1		ENSG00000153250|ENST00000348849|RBMS1;PDK1-RBMS1|1|fusion	ENSG00000153250|ENST00000348849|RBMS1;PDK1-RBMS1|1|fusion	ENSG00000153250|ENST00000348849|RBMS1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	521.273509	1040.53247	0.18884	9.8439E-05	-0.25672	-0.00013382	-0.06788	-3.5384E-05	521.2731651803264	72.282	2.3254	69.679	69.328	71.654	-2.6023	-0.17435	-0.00016815	NaN	82.241	106	46	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	278130			48822	5672;15487	40508	40536				184			0.013820967085393931
RLAGRGGGR	9	Unmodified	_RLAGRGGGR_					0	0	0			REV__ENST00000591914.5_2_18:48556659-48573390:+|nuORF	REV__ENST00000591914.5_2_18:48556659-48573390:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	450.26971435546875	2	450.267742	898.52093	1.9084	0.0008593	1.0182	0.00045844	2.9266	0.0013177	450.26807810544716	61.38	1.5642	58.311	57.573	59.137	-3.0685					65	43	2	0	0	0	0.67509	1	2079	2079		23.042	1.0826	1	26008	+		48823	27939	40509	40537	52387	52387					0.06761080520095675
RLAHLGVQV	9	Unmodified	_RLAHLGVQV_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;RPN1|p.R263Tfs*3|1|0.4|ENSG00000163902|chr3:128632004-128632005|-/T|frameshift_variant;ENST00000481168.1_1_3:128363760-128369658:-|nuORF;ENST00000497415.1_1_3:128359957-128369658:-|nuORF	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OvCa99_classI_Rep5	1	496.8045349121094	2	496.803626	991.592698	-0.042476	-2.1102E-05	-0.76044	-0.00037779	-0.80291	-0.00039889	496.803247342706	64.907	1.2726	64.907	64.631	65.904	0					63	31	4	0	0	0	0.33652	1	5947	5947		58.782	0.97068	1	7765100			48824	6376	40510	40538	52388	52388					0.09656575153940139
RLAHYIDRV	9	Unmodified	_RLAHYIDRV_					0	0	0		LMNB2|p.S553Mfs*13|1|0.4|ENSG00000176619|chr19:2431834-2431835|GC/-|frameshift_variant;ENSG00000176619|ENST00000325327|LMNB2	LMNB2|p.S553Mfs*13|1|0.4|ENSG00000176619|chr19:2431834-2431835|GC/-|frameshift_variant	LMNB2|p.S553Mfs*13|1|0.4|ENSG00000176619|chr19:2431834-2431835|GC/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	571.8270263671875	2	571.825089	1141.63563	-0.23492	-0.00013433	0.35649	0.00020385	0.12157	6.9514E-05	571.8249826622193	51.394	0.67237	51.394	51.036	51.708	0					48	15	4	0	0	0	0.2422	1	3948	3948		69.628	21.97	1	988330			48825	7618	40511	40539	52389	52389					0.07047345211344691
RLAIKSAL	8	Unmodified	_RLAIKSAL_					0	0	0		tr|A0A553SHA4|A0A553SHA4_NIACILargeribosomalsubunitproteinuL4OS=NialliacirculansOX=1397GN=rplDPE=3SV=1	tr|A0A553SHA4|A0A553SHA4_NIACILargeribosomalsubunitproteinuL4OS=NialliacirculansOX=1397GN=rplDPE=3SV=1	tr|A0A553SHA4|A0A553SHA4_NIACILargeribosomalsubunitproteinuL4OS=NialliacirculansOX=1397GN=rplDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.2913513183594	2	436.28982	870.565087	2.865	0.00125	1.6954	0.00073969	4.5604	0.0019896	436.29039727042573	135.9	2.0052	134.35	134.01	136.01	-1.5437					90	40	3	0	0	0	0.75915	1	13214	13214		20.482	0	1	94245			48826	33251	40512	40540	52390	52390					0.12462671893706556
RLAKDSSEI	9	Unmodified	_RLAKDSSEI_					0	0	0		tr|A0A7D6VSQ1|A0A7D6VSQ1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11535PE=4SV=1	tr|A0A7D6VSQ1|A0A7D6VSQ1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11535PE=4SV=1	tr|A0A7D6VSQ1|A0A7D6VSQ1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11535PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	509.7794494628906	2	509.780013	1017.54547	0.1112	5.669E-05	-1.3759	-0.00070141	-1.2647	-0.00064472	509.77924681580623	31.683	1.0433	31.683	31.509	32.553	0					26	20	2	0	0	0	0.40667	1	1319	1319		51.335	0	1	361000			48827	35046	40513	40541	52391	52391					0.03740251092278868
RLALGKINL	9	Unmodified	_RLALGKINL_					0	0	0			REV__tr|A0A7D6VZQ8|A0A7D6VZQ8_9CLOTDNA-directedRNApolymerasesubunitalphaOS=ClostridiumintestinaleOX=36845GN=rpoAPE=3SV=1	REV__tr|A0A7D6VZQ8|A0A7D6VZQ8_9CLOTDNA-directedRNApolymerasesubunitalphaOS=ClostridiumintestinaleOX=36845GN=rpoAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	499.33099365234375	2	499.329476	996.6444	1.9485	0.00097297	0.60903	0.00030411	2.5576	0.0012771	499.3294996326122	82.159	0.75751	82.159	81.895	82.652	0					39	17	3	0	0	0	0.33652	1	8496	8496		58.782	14.665	1	2081200	+		48828	31845	40514	40542	52392	52392					0.1459431884784408
RLALLVVEP	9	Unmodified	_RLALLVVEP_					0	0	0			REV__ENST00000529055.5_1_11:224232-236273:-|nuORF	REV__ENST00000529055.5_1_11:224232-236273:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.78076171875	2	505.32386	1008.63317	-1.1001	-0.00055593	0.88094	0.00044516	-0.21919	-0.00011076	505.32417636740036	102.18	0.62515	100.66	100.42	101.05	-1.5211					23	11	3	0	0	0	0.027462	1	7044	7044		27.882	0	1	24366	+		48829	27183	40515	40543	52393	52393					0.12919496753704607
RLALPLLSR	9	Unmodified	_RLALPLLSR_					0	0	0			REV__ENST00000553505.1_1_14:24044793-24046767:-|nuORF	REV__ENST00000553505.1_1_14:24044793-24046767:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	519.8446044921875	2	519.842751	1037.67095	2.1173	0.0011007	0.12756	6.6312E-05	2.2449	0.001167	519.8426826722674	75.465	1.0713	75.465	75.128	76.199	0					68	26	4	0	0	0	0.29519	1	7523	7523		63.534	1.4264	1	9696300	+		48830	17261	40516	40544	52394	52394					0.15362007739167893
RLALPLLSR	9	Unmodified	_RLALPLLSR_					0	0	0			REV__ENST00000553505.1_1_14:24044793-24046767:-|nuORF	REV__ENST00000553505.1_1_14:24044793-24046767:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	519.8422241210938	2	519.842751	1037.67095	-0.88384	-0.00045946	0.11636	6.0491E-05	-0.76748	-0.00039897	519.8428313366139	101.51	3.954	100.74	100.32	104.27	-0.76401					201	79	5	0	0	0	0.14855	15	9288	9288;9292;9298;9304;9310;9316;9327;9334;9340;9346;9353;9373;9403;9415;9420		85.161	17.667	1	2123700	+		48831	17261	40516	40544	52395;52396;52397;52398;52399;52400;52401;52402;52403;52404;52405;52406;52407;52408;52409	52395					0.15362007739167893
RLALPLLSR	9	Unmodified	_RLALPLLSR_					0	0	0			REV__ENST00000553505.1_1_14:24044793-24046767:-|nuORF	REV__ENST00000553505.1_1_14:24044793-24046767:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	519.8426513671875	2	519.842751	1037.67095	0.40121	0.00020857	-1.3083	-0.0006801	-0.90707	-0.00047153	519.8420343224896	103.51	3.443	102.08	101.71	105.15	-1.4347					193	65	5	0	0	0	0.10363	11	7240	7151;7162;7168;7174;7193;7198;7204;7222;7235;7240;7254		96.19	25.135	1	1720200	+		48832	17261	40516	40544	52410;52411;52412;52413;52414;52415;52416;52417;52418;52419;52420	52419					0.15362007739167893
RLALPLLSR	9	Unmodified	_RLALPLLSR_					0	0	0			REV__ENST00000553505.1_1_14:24044793-24046767:-|nuORF	REV__ENST00000553505.1_1_14:24044793-24046767:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.8422241210938	2	519.842751	1037.67095	-0.72199	-0.00037532	-0.072479	-3.7677E-05	-0.79447	-0.000413	519.8426952979958	104.34	3.079	102.22	101.85	104.93	-2.1192					170	59	5	0	0	0	0.16264	8	9464	9429;9441;9452;9464;9476;9488;9500;9526		82.75	16.135	1	1694100	+		48833	17261	40516	40544	52421;52422;52423;52424;52425;52426;52427;52428	52424					0.15362007739167893
RLALPLRSL	9	Unmodified	_RLALPLRSL_					0	0	0		nc|ENSG00000196083|Q9NPH3-5|IL1RAP	nc|ENSG00000196083|Q9NPH3-5|IL1RAP	nc|ENSG00000196083|Q9NPH3-5|IL1RAP	MULTI-MSMS	OvCa9_classI_Rep2	2	519.8433837890625	2	519.842751	1037.67095	-0.88384	-0.00045946	0.11636	6.0491E-05	-0.76748	-0.00039897	519.8428313366139	101.51	3.954	100.74	100.32	104.27	-0.76401					201	79	5	0	0	0	0.1944	2	9379	9379;9396		77.318	2.2743	1	2123700			48834	15237	40517	40545	52429;52430	52429					0.15362007739167893
RLALPLRSL	9	Unmodified	_RLALPLRSL_					0	0	0		nc|ENSG00000196083|Q9NPH3-5|IL1RAP	nc|ENSG00000196083|Q9NPH3-5|IL1RAP	nc|ENSG00000196083|Q9NPH3-5|IL1RAP	MULTI-MSMS	OvCa9_classI_Rep3	3	519.84375	2	519.842751	1037.67095	0.40121	0.00020857	-1.3083	-0.0006801	-0.90707	-0.00047153	519.8420343224896	103.51	3.443	102.08	101.71	105.15	-1.4347					193	65	5	0	0	0	0.16264	2	7181	7181;7187		82.75	3.0379	1	1720200			48835	15237	40517	40545	52431;52432	52431					0.15362007739167893
RLALPLRSL	9	Unmodified	_RLALPLRSL_					0	0	0		nc|ENSG00000196083|Q9NPH3-5|IL1RAP	nc|ENSG00000196083|Q9NPH3-5|IL1RAP	nc|ENSG00000196083|Q9NPH3-5|IL1RAP	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.8424072265625	2	519.842751	1037.67095	-0.72199	-0.00037532	-0.072479	-3.7677E-05	-0.79447	-0.000413	519.8426952979958	104.34	3.079	102.22	101.85	104.93	-2.1192					170	59	5	0	0	0	0.46356	1	9540	9540		45.972	1.5951	1	1694100			48836	15237	40517	40545	52433	52433					0.15362007739167893
RLAPIPIL	8	Unmodified	_RLAPIPIL_					0	0	0			REV__PTCH1|p.S1176Yfs*8|1|0.05|ENSG00000185920|chr9:95449863-95449864|-/T|frameshift_variant	REV__PTCH1|p.S1176Yfs*8|1|0.05|ENSG00000185920|chr9:95449863-95449864|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	446.8031921386719	2	446.802563	891.590573	0.97127	0.00043396	-0.80234	-0.00035849	0.16893	7.5478E-05	446.80206538666704	119.76	1.1814	118.73	118.33	119.51	-1.0271					55	23	3	0	0	0	0.59103	1	9101	9101		65.897	0	1	215100	+		48837	22544	40518	40546	52434	52434					0.14044146416131298
RLAPIPIL	8	Unmodified	_RLAPIPIL_					0	0	0			REV__PTCH1|p.S1176Yfs*8|1|0.05|ENSG00000185920|chr9:95449863-95449864|-/T|frameshift_variant	REV__PTCH1|p.S1176Yfs*8|1|0.05|ENSG00000185920|chr9:95449863-95449864|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	446.8026428222656	2	446.802563	891.590573	-0.94931	-0.00042415	1.1109	0.00049634	0.16157	7.2189E-05	446.8029099891655	120.04	1.0977	118.69	118.35	119.45	-1.3444					54	20	4	0	0	0	0.72922	1	11308	11308		37.028	7.1869	1	196690	+		48838	22544	40518	40546	52435	52435					0.14044146416131298
RLAPIPIL	8	Unmodified	_RLAPIPIL_					0	0	0			REV__PTCH1|p.S1176Yfs*8|1|0.05|ENSG00000185920|chr9:95449863-95449864|-/T|frameshift_variant	REV__PTCH1|p.S1176Yfs*8|1|0.05|ENSG00000185920|chr9:95449863-95449864|-/T|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	446.802563	891.590573	0.71464	0.0003193	-0.50312	-0.00022479	0.21152	9.4507E-05	446.80221278181784	118.56	1.1399	118.41	118.08	119.22	-0.14755	-0.20143	-0.00027875	NaN	65.897	53	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	152200	+		48839	22544	40518	40546							0.14044146416131298
RLAPITTIF	9	Unmodified	_RLAPITTIF_					0	0	0			REV__L1MA4A_dup2646|chr7:55461716-55462655:-|2.470314538974461|0.4304615177296836|2.52|429.0|19|2|sense	REV__L1MA4A_dup2646|chr7:55461716-55462655:-|2.470314538974461|0.4304615177296836|2.52|429.0|19|2|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	516.3134765625	2	516.316035	1030.61752	-5.397	-0.0027865	1.4148	0.00073048	-3.9822	-0.0020561	516.3166994253895	156.49	2.0589	155.32	154.75	156.81	-1.1707					101	49	4	0	0	0	0.61208	1	13504	13504		30.504	1.3541	1	710990	+		48840	28392	40519	40547	52436	52436					0.10343210236624145
RLAPLLSR	8	Unmodified	_RLAPLLSR_					0	0	0			REV__nc|ENSG00000144278|Q8IUC8-3|GALNT13	REV__nc|ENSG00000144278|Q8IUC8-3|GALNT13	MULTI-MSMS	OvCa9_classI_Rep2	2	463.3008728027344	2	463.300719	924.586885	-1.235	-0.00057219	1.0563	0.0004894	-0.1787	-8.2791E-05	463.30108478579115	84.367	1.9628	82.82	82.326	84.289	-1.5462					106	38	4	0	0	0	0.74754	1	7271	7271		27.882	0	1	606810	+		48841	19898	40520	40548	52437	52437					0.12157476642278198
RLAQHITYV	9	Unmodified	_RLAQHITYV_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	MULTI-MSMS	OvCa99_classI_Rep5	1	550.8156127929688	2	550.81419	1099.61383	-0.3662	-0.00020171	0.35564	0.00019589	-0.010558	-5.8154E-06	550.8143031406272	58.634	0.78918	58.634	58.403	59.192	0					46	19	4	0	0	0	0.42676	1	4987	4987		49.442	10.635	1	6595000			48842	6688	40521	40549	52438	52438					0.06800540462791105
RLAQHITYV	9	Unmodified	_RLAQHITYV_					0	0	0		ENSG00000166508|ENST00000303887|MCM7;nc|ENSG00000166508|P33993-3|MCM7	ENSG00000166508|ENST00000303887|MCM7	ENSG00000166508|ENST00000303887|MCM7	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	550.81419	1099.61383	-0.26328	-0.00014502	2.1731	0.001197	1.9098	0.001052	550.8152643239883	62.373	0.34542	58.915	58.715	59.061	-3.4577	0.14024	0.0018283	NaN	49.442	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42747			48843	6688	40521	40549							0.06800540462791105
RLAQYKGEL	9	Unmodified	_RLAQYKGEL_					0	0	0		tr|A0A553SHZ0|A0A553SHZ0_NIACIMurR/RpiRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_13905PE=4SV=1	tr|A0A553SHZ0|A0A553SHZ0_NIACIMurR/RpiRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_13905PE=4SV=1	tr|A0A553SHZ0|A0A553SHZ0_NIACIMurR/RpiRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_13905PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	539.3070068359375	2	539.306198	1076.59784	0.61933	0.00033401	0.58921	0.00031776	1.2085	0.00065177	539.3064487709081	67.188	0.78447	67.188	66.898	67.683	0					39	19	3	0	0	0	0.51865	1	6264	6264		40.778	0.20554	1	4239600			48844	33328	40522	40550	52439	52439					0.06260834225895451
RLARTPLPSTR	11	Unmodified	_RLARTPLPSTR_					0	0	0		TP53|p.T123Rfs*48|1|0.77|ENSG00000141510|chr17:7676001-7676002|-/TC|frameshift_variant	TP53|p.T123Rfs*48|1|0.77|ENSG00000141510|chr17:7676001-7676002|-/TC|frameshift_variant	TP53|p.T123Rfs*48|1|0.77|ENSG00000141510|chr17:7676001-7676002|-/TC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	634.3778076171875	2	634.383303	1266.75205	-5.7659	-0.0036578	-2.4863	-0.0015773	-8.2521	-0.005235	634.3814892688545	163.56	1.4089	163.33	162.75	164.16	-0.22696					114	47	3	0	0	0	0.69455	1	16680	16680		31.53	0	1	320930			48845	32978	40523	40551	52440	52440					0.129346637112576
RLARTPLPSTR	11	Unmodified	_RLARTPLPSTR_					0	0	0		TP53|p.T123Rfs*48|1|0.77|ENSG00000141510|chr17:7676001-7676002|-/TC|frameshift_variant	TP53|p.T123Rfs*48|1|0.77|ENSG00000141510|chr17:7676001-7676002|-/TC|frameshift_variant	TP53|p.T123Rfs*48|1|0.77|ENSG00000141510|chr17:7676001-7676002|-/TC|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	634.383303	1266.75205	-6.2701	-0.0039776	-2.9625	-0.0018794	-9.2326	-0.005857	634.3812912621064	164.8	1.711	163.16	162.76	164.47	-1.6405	-0.1702	-0.00021514	NaN	31.53	130	60	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120080			48846	32978	40523	40551							0.129346637112576
RLASKTKTSS	10	Unmodified	_RLASKTKTSS_					0	0	0		ENSG00000143294|ENST00000271526|PRCC	ENSG00000143294|ENST00000271526|PRCC	ENSG00000143294|ENST00000271526|PRCC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.7650146484375	2	539.814387	1077.61422	-0.74331	-0.00040125	-3.3731	-0.0018209	-4.1164	-0.0022221	539.8111250159533	78.153	0.29124	75.336	75.214	75.506	-2.8165					8	5	2	0	0	0	0.027088	1	6296	6296		26.693	6.2111	1	19810			48847	5028	40524	40552	52441	52441					0.07851915392006958
RLASKVISH	9	Unmodified	_RLASKVISH_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;THADA|p.R1942Ifs*6|1|0.05|ENSG00000115970|chr2:43230985-43230986|-/CTGGGGGA|frameshift_variant;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-4|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.8081970214844	2	505.808908	1009.60326	-0.82595	-0.00041777	0.65364	0.00033062	-0.17231	-8.7156E-05	505.80906827590786	39.991	1.2351	37.037	36.814	38.049	-2.9541					64	23	4	0	0	0	0.1944	1	1682	1682		77.318	0	1	313630			48848	3144	40525	40553	52442	52442					0.098845578083683
RLASKVISH	9	Unmodified	_RLASKVISH_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;THADA|p.R1942Ifs*6|1|0.05|ENSG00000115970|chr2:43230985-43230986|-/CTGGGGGA|frameshift_variant;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-4|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MULTI-MATCH	OvCa9_classI_Rep2	2		2	505.808908	1009.60326	-0.76877	-0.00038885	0.58529	0.00029604	-0.18348	-9.2808E-05	505.8091026764109	39.842	0.89475	37.132	36.854	37.749	-2.7097	0.047494	-2.2048E-05	NaN	77.318	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73309			48849	3144	40525	40553							0.098845578083683
RLASLQSEV	9	Unmodified	_RLASLQSEV_					0	0	0		chr7:150369033-150369671|409|12.53|0.5|4.65|+|0|REPIN1,REPIN1|1;ENST00000397281.6_1_7:150065961-150066789:+|nuORF;ENST00000487455.1_1_7:150065323-150066789:+|nuORF	chr7:150369033-150369671|409|12.53|0.5|4.65|+|0|REPIN1,REPIN1|1	chr7:150369033-150369671|409|12.53|0.5|4.65|+|0|REPIN1,REPIN1|1	MULTI-MSMS	OvCa99_classI_Rep5	1	501.7840270996094	2	501.782556	1001.55056	-0.10372	-5.2046E-05	0.35008	0.00017567	0.24636	0.00012362	501.7824662631339	68.989	1.3132	68.989	68.692	70.005	0					70	31	3	0	0	0	0.21231	1	6534	6534		74.255	0	1	6054300			48850	526	40526	40554	52443	52443					0.04984554954910436
RLASLQSEV	9	Unmodified	_RLASLQSEV_					0	0	0		chr7:150369033-150369671|409|12.53|0.5|4.65|+|0|REPIN1,REPIN1|1;ENST00000397281.6_1_7:150065961-150066789:+|nuORF;ENST00000487455.1_1_7:150065323-150066789:+|nuORF	chr7:150369033-150369671|409|12.53|0.5|4.65|+|0|REPIN1,REPIN1|1	chr7:150369033-150369671|409|12.53|0.5|4.65|+|0|REPIN1,REPIN1|1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	501.782556	1001.55056	-0.048755	-2.4464E-05	-0.68114	-0.00034179	-0.7299	-0.00036625	501.78220100198257	71.746	0.58958	69.144	68.932	69.521	-2.6023	0.077446	-0.0002653	NaN	74.255	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32742			48851	526	40526	40554							0.04984554954910436
RLASRPLL	8	Unmodified	_RLASRPLL_					0	0	0		ENSG00000134247|ENST00000393203|PTGFRN	ENSG00000134247|ENST00000393203|PTGFRN	ENSG00000134247|ENST00000393203|PTGFRN	MULTI-MSMS	OvCa9_classI_Rep2	2	463.3008117675781	2	463.300719	924.586885	-1.235	-0.00057219	1.0563	0.0004894	-0.1787	-8.2791E-05	463.30108478579115	84.367	1.9628	82.82	82.326	84.289	-1.5462					106	38	4	0	0	0	0.7224	1	7290	7290		38.806	0	1	606810			48852	4267	40527	40555	52444	52444					0.12157476642289566
RLASRPLLL	9	Unmodified	_RLASRPLLL_					0	0	0		ENSG00000134247|ENST00000393203|PTGFRN	ENSG00000134247|ENST00000393203|PTGFRN	ENSG00000134247|ENST00000393203|PTGFRN	MULTI-MSMS	OvCa99_classI_Rep5	1	519.8440551757812	2	519.842751	1037.67095	2.1173	0.0011007	0.12756	6.6312E-05	2.2449	0.001167	519.8426826722674	75.465	1.0713	75.465	75.128	76.199	0					68	26	4	0	0	0	0.28934	1	7495	7495		64.207	9.431	1	9696300			48853	4267	40528	40556	52445	52445					0.1536200773919063
RLASTLVHL	9	Unmodified	_RLASTLVHL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000070371|ENST00000427926|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa99_classI_Rep5	1	505.31243896484375	2	505.311284	1008.60801	2.1314	0.001077	-0.53751	-0.00027161	1.5939	0.00080543	505.31095689985216	77.06	1.5754	77.06	76.799	78.374	0					91	37	5	0	0	0	0.24951	2	7768	7739;7768		68.787	10.005	1	18511000			48854	4906;1426	40529	40557	52446;52447	52447					0.10405441951138528
RLASTLVHL	9	Unmodified	_RLASTLVHL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000070371|ENST00000427926|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.3121032714844	2	505.311284	1008.60801	-0.54741	-0.00027661	0.16734	8.456E-05	-0.38006	-0.00019205	505.31124275930443	83.201	1.2651	80.53	80.185	81.45	-2.6711					81	25	4	0	0	0	0.48047	1	6917	6917		44.377	13.874	1	541880			48855	4906;1426	40529	40557	52448	52448					0.10405441951138528
RLASTLVHL	9	Unmodified	_RLASTLVHL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000070371|ENST00000427926|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MATCH	OvCa9_classI_Rep3	3		2	505.311284	1008.60801	-1.4676	-0.00074157	0.99195	0.00050124	-0.47561	-0.00024033	505.3116835267586	82.881	1.9887	80.585	80.283	82.272	-2.2963	0.027439	0.0004911	NaN	44.377	106	41	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	689810			48856	4906;1426	40529	40557							0.10405441951138528
RLASVAQEL	9	Unmodified	_RLASVAQEL_					0	0	0		nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2;BICD2-IPPK|1|fusion	nc|ENSG00000185963|Q8TD16|BICD2	nc|ENSG00000185963|Q8TD16|BICD2	MULTI-MSMS	OvCa99_classI_Rep5	1	493.7867431640625	2	493.785099	985.555644	2.3853	0.0011778	-0.56239	-0.0002777	1.8229	0.00090014	493.78469920884464	75.093	0.75837	75.093	74.88	75.639	0					40	18	3	0	0	0	0.1574	1	7453	7453		83.647	1.4065	1	2028300			48857	149	40530	40558	52449	52449					0.06228858817530636
RLASVAQEL	9	Unmodified	_RLASVAQEL_					0	0	0		nc|ENSG00000185963|Q8TD16|BICD2;ENSG00000185963|ENST00000356884|BICD2;BICD2-IPPK|1|fusion	nc|ENSG00000185963|Q8TD16|BICD2	nc|ENSG00000185963|Q8TD16|BICD2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	493.785099	985.555644	-0.21648	-0.00010689	2.2368	0.0011045	2.0203	0.00099761	493.7864125739264	76.602	0.94191	74.748	74.096	75.038	-1.854	-0.17241	0.0024834	NaN	83.647	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21679			48858	149	40530	40558							0.06228858817530636
RLASYLDKV	9	Unmodified	_RLASYLDKV_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;CON__P19001;ENSG00000171346|ENST00000254043|KRT15;CON__P19012;CON__P08730-1;CON__Q9QWL7;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;CON__Q99456;CON__P02533;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14;ENSG00000187242|ENST00000251643|KRT12;CON__P35527;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;KRT16|p.M259Sfs*9|1|0.05|ENSG00000186832|chr17:41611226-41611227|-/ACACGTGTGGACAC|frameshift_variant;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000399211.7_1_17:16744211-16749072:-|nuORF	CON__P08727;ENSG00000186832|ENST00000301653|KRT16;ENST00000399211.7_1_17:16744211-16749072:-|nuORF	CON__P08727	MULTI-MSMS	OvCa9_classI_Rep2	2	532.8082885742188	2	532.808574	1063.60259	-1.6207	-0.00086354	0.88738	0.0004728	-0.73335	-0.00039073	532.809075214856	76.341	2.1952	74.487	74.096	76.292	-1.854					137	40	4	0	0	0	0.014622	8	6303	6297;6303;6309;6315;6321;6327;6333;6339		154.12	35.375	1	3797500		+	48859	625;626;11383	40531	40559	52450;52451;52452;52453;52454;52455;52456;52457	52451					0.07333718368658992
RLASYLDKV	9	Unmodified	_RLASYLDKV_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;CON__P19001;ENSG00000171346|ENST00000254043|KRT15;CON__P19012;CON__P08730-1;CON__Q9QWL7;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;CON__Q99456;CON__P02533;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14;ENSG00000187242|ENST00000251643|KRT12;CON__P35527;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;KRT16|p.M259Sfs*9|1|0.05|ENSG00000186832|chr17:41611226-41611227|-/ACACGTGTGGACAC|frameshift_variant;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000399211.7_1_17:16744211-16749072:-|nuORF	CON__P08727;ENSG00000186832|ENST00000301653|KRT16;ENST00000399211.7_1_17:16744211-16749072:-|nuORF	CON__P08727	MULTI-MSMS	OvCa9_classI_Rep3	3	532.807861328125	2	532.808574	1063.60259	-0.3837	-0.00020444	-0.36608	-0.00019505	-0.74977	-0.00039948	532.8083640293886	77.17	3.7419	74.798	74.138	77.88	-2.3715					207	73	5	0	0	0	0.0078313	11	4019	3986;3995;4001;4007;4013;4019;4025;4031;4043;4049;4055		180.87	70.297	1	3803100		+	48860	625;626;11383	40531	40559	52458;52459;52460;52461;52462;52463;52464;52465;52466;52467;52468	52463					0.07333718368658992
RLASYLDKV	9	Unmodified	_RLASYLDKV_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;CON__P19001;ENSG00000171346|ENST00000254043|KRT15;CON__P19012;CON__P08730-1;CON__Q9QWL7;ENSG00000128422|ENST00000311208|KRT17;CON__Q04695;CON__Q99456;CON__P02533;CON__A2A4G1;ENSG00000186847|ENST00000167586|KRT14;ENSG00000187242|ENST00000251643|KRT12;CON__P35527;ENST00000491673.1_1_17:39779200-39780782:-|nuORF;ENST00000588319.1_1_17:39768340-39768940:-|nuORF;ENST00000493253.5_1_17:39778327-39780527:-|nuORF;KRT16|p.M259Sfs*9|1|0.05|ENSG00000186832|chr17:41611226-41611227|-/ACACGTGTGGACAC|frameshift_variant;ENST00000414673.5_1_17:16734454-16736059:-|nuORF;ENSG00000186832|ENST00000301653|KRT16;CON__P08779;ENST00000399211.7_1_17:16744211-16749072:-|nuORF	CON__P08727;ENSG00000186832|ENST00000301653|KRT16;ENST00000399211.7_1_17:16744211-16749072:-|nuORF	CON__P08727	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.8090209960938	2	532.808574	1063.60259	-1.1516	-0.00061358	0.62725	0.0003342	-0.52435	-0.00027938	532.8089107055455	77.667	2.0564	74.851	74.488	76.544	-2.8165					142	42	4	0	0	0	0.0085876	4	6247	6223;6235;6247;6260		176.44	35.196	1	4693600		+	48861	625;626;11383	40531	40559	52469;52470;52471;52472	52471					0.07333718368658992
RLASYLDRV	9	Unmodified	_RLASYLDRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa99_classI_Rep5	1	546.8129272460938	2	546.811648	1091.60874	-0.019478	-1.0651E-05	-0.93298	-0.00051016	-0.95245	-0.00052081	546.8111583295474	72.841	1.8324	72.841	72.492	74.324	0					164	46	6	0	0	0	0.13326	3	7150	7120;7150;7183		88.177	21.673	1	48197000			48862	2808	40532	40560	52473;52474;52475	52474					0.06660236600191638
RLASYLDRV	9	Unmodified	_RLASYLDRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa9_classI_Rep2	2	546.8114624023438	2	546.811648	1091.60874	-0.3367	-0.00018411	-0.7984	-0.00043657	-1.1351	-0.00062068	546.811268925944	77.282	4.1237	75.493	75.051	79.174	-1.7894					214	80	5	0	0	0	0.020196	13	6423	6411;6417;6423;6429;6435;6441;6447;6454;6460;6466;6472;6478;6490		146.79	61.87	1	5234200			48863	2808	40532	40560	52476;52477;52478;52479;52480;52481;52482;52483;52484;52485;52486;52487;52488	52478					0.06660236600191638
RLASYLDRV	9	Unmodified	_RLASYLDRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa9_classI_Rep3	3	546.8114624023438	2	546.811648	1091.60874	-0.81654	-0.00044649	-0.31743	-0.00017357	-1.134	-0.00062007	546.8115392968579	78.277	5.424	75.924	75.402	80.825	-2.3527					239	107	5	0	0	0	0.040625	11	4151	4129;4139;4145;4151;4157;4163;4169;4175;4187;4225;4233		126.24	32.236	1	6405800			48864	2808	40532	40560	52489;52490;52491;52492;52493;52494;52495;52496;52497;52498;52499	52492					0.06660236600191638
RLASYLDRV	9	Unmodified	_RLASYLDRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.8118896484375	2	546.811648	1091.60874	-0.36236	-0.00019814	-0.77346	-0.00042294	-1.1358	-0.00062108	546.8112979962482	78.673	5.7498	75.922	75.377	81.127	-2.7514					246	118	5	0	0	0	0.061524	5	6355	6334;6343;6355;6367;6379		112.11	38.335	1	7431200			48865	2808	40532	40560	52500;52501;52502;52503;52504	52502					0.06660236600191638
RLASYLDRV	9	Unmodified	_RLASYLDRV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MATCH	OvCa9_classI_Rep3	3		2	546.811648	1091.60874	-0.93549	-0.00051154	2.2749	0.001244	1.3394	0.00073242	546.8122039400915	75.043	0.28709	72.632	72.439	72.726	-2.4106	-0.10418	0.003378	NaN	88.177	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5288.5			48866	2808	40532	40560							0.06660236600191638
RLATALQKL	9	Unmodified	_RLATALQKL_					0	0	0		nc|ENSG00000198467|P07951-3|TPM2;nc|ENSG00000198467|P07951-2|TPM2;CON__Q3SX28;ENSG00000198467|ENST00000645482|TPM2;ENSG00000143549|ENST00000651641|TPM3;ENST00000471212.5_1_9:35684790-35689844:-|nuORF;ENST00000558868.5_1_15:63340774-63353139:+|nuORF;ENST00000391998.3_1_19:53982744-53982942:+|nuORF;ENST00000558400.1_1_15:63349204-63351954:+|nuORF;ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000167460|P67936-2|TPM4;ENST00000587201.5_1_19:16187360-16198908:+|nuORF;ENST00000520239.1_1_8:70041855-70042335:+|nuORF;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-4|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-6|TPM1;ENSG00000140416|ENST00000403994|TPM1;ENST00000560975.5_1_15:63335715-63353895:+|nuORF;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-5|TPM3;ENST00000473036.2_1_1:154145382-154155604:-|nuORF	nc|ENSG00000198467|P07951-3|TPM2;ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000143549|P06753-3|TPM3	ENSG00000167460|ENST00000643579|TPM4	MULTI-MSMS	OvCa99_classI_Rep5	1	507.3280334472656	2	507.326934	1012.63931	-0.10917	-5.5387E-05	-0.81293	-0.00041242	-0.9221	-0.00046781	507.3265352357464	65.169	2.8481	65.169	64.834	67.683	0					146	71	5	0	0	0	0.10502	3	5946	5946;6004;6038		95.815	16.158	1	40796000		+	48867	15257;6790;15075;15054	40533	40561	52505;52506;52507	52505					0.1335001498522388
RLATWRRRYLR	11	Unmodified	_RLATWRRRYLR_					0	0	0		ENSG00000284188|ENST00000640271|unknown	ENSG00000284188|ENST00000640271|unknown	ENSG00000284188|ENST00000640271|unknown	MULTI-MSMS	OvCa9_classI_Rep3	3	516.30908203125	3	516.31117	1545.91168	-6.1959	-0.003199	3.5647	0.0018405	-2.6312	-0.0013585	516.3131116708117	162.19	3.1861	160.82	159.18	162.36	-1.3692					191	67	4	0	0	0	0.72573	1	14143	14143		6.001	0.30226	1	59102			48868	9620	40534	40562	52508	52508					0.1605621677911131
RLAVYIDRV	9	Unmodified	_RLAVYIDRV_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;ENST00000470199.2_1_1:156084502-156100509:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	OvCa99_classI_Rep5	1	552.8311157226562	2	552.82984	1103.64513	2.0706	0.0011447	-0.86199	-0.00047653	1.2086	0.00066815	552.8293630880819	77.276	2.6369	77.276	76.799	79.436	0					170	63	5	0	0	0	0.084918	3	7780	7780;7810;7840		101.25	34.823	1	53644000			48869	6091	40535	40563	52509;52510;52511	52509					0.09745113496887825
RLAVYIDRV	9	Unmodified	_RLAVYIDRV_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;ENST00000470199.2_1_1:156084502-156100509:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	OvCa9_classI_Rep2	2	552.8297729492188	2	552.82984	1103.64513	1.1063	0.00061159	-2.0214	-0.0011175	-0.91516	-0.00050593	552.8286771584491	80.495	2.0825	78.799	78.519	80.601	-1.6951					99	40	4	0	0	0	0.14855	3	6804	6804;6811;6817		85.161	31.809	1	913920			48870	6091	40535	40563	52512;52513;52514	52512					0.09745113496887825
RLAVYIDRV	9	Unmodified	_RLAVYIDRV_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;ENST00000470199.2_1_1:156084502-156100509:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.8309936523438	2	552.82984	1103.64513	-0.7273	-0.00040207	0.049405	2.7312E-05	-0.6779	-0.00037476	552.8298295070128	81.571	1.6515	78.861	78.494	80.145	-2.7106					90	33	4	0	0	0	0.2422	3	6706	6695;6706;6717		69.628	16.276	1	1054700			48871	6091	40535	40563	52515;52516;52517	52516					0.09745113496887825
RLAVYIDRV	9	Unmodified	_RLAVYIDRV_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;ENST00000470199.2_1_1:156084502-156100509:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MATCH	OvCa9_classI_Rep3	3		2	552.82984	1103.64513	-0.20954	-0.00011584	-0.82449	-0.0004558	-1.034	-0.00057165	552.82939433308	79.972	0.39834	77.632	77.412	77.81	-2.3399	0.19076	-2.2538E-05	NaN	101.25	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15425			48872	6091	40535	40563							0.09745113496887825
RLAVYIDRV	9	Unmodified	_RLAVYIDRV_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;ENST00000470199.2_1_1:156084502-156100509:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MATCH	OvCa9_classI_Rep3	3		2	552.82984	1103.64513	-0.97363	-0.00053825	0.46056	0.00025461	-0.51306	-0.00028364	552.8300471908026	81.372	2.308	79.049	78.697	81.005	-2.3226	0.14608	0.00099928	NaN	85.161	104	45	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1135400			48873	6091	40535	40563							0.09745113496887825
RLAVYIDRV	9	Unmodified	_RLAVYIDRV_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;ENST00000470199.2_1_1:156084502-156100509:+|nuORF	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	552.82984	1103.64513	-0.58291	-0.00032225	1.5715	0.00086878	0.98861	0.00054653	552.8293403104171	80.126	0.92634	77.416	76.932	77.858	-2.7106	-0.025813	0.0026266	NaN	101.25	22	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24674			48874	6091	40535	40563							0.09745113496887825
RLAWAEKDL	9	Unmodified	_RLAWAEKDL_					0	0	0			REV__nc|ENSG00000168071|A6NC98-5|CCDC88B	REV__nc|ENSG00000168071|A6NC98-5|CCDC88B	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.3033447265625	2	551.306198	1100.59784	-0.92402	-0.00050942	-3.066	-0.0016903	-3.99	-0.0021997	551.3045019842067	45.878	1.3513	42.806	42.509	43.86	-3.0724					75	25	4	0	0	0	0.42676	1	2367	2367		49.442	6.5773	1	468990	+		48875	28988	40536	40564	52518	52518					0.051568342258860866
RLAWAEKDL	9	Unmodified	_RLAWAEKDL_					0	0	0			REV__nc|ENSG00000168071|A6NC98-5|CCDC88B	REV__nc|ENSG00000168071|A6NC98-5|CCDC88B	MULTI-MATCH	OvCa99_classI_Rep5	1		2	551.306198	1100.59784	-0.34498	-0.00019019	-6.8022	-0.0037501	-7.1472	-0.0039403	551.302245877944	43.035	0.13029	43.035	42.926	43.057	0	0.096905	-0.0032686	NaN	49.442	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69331	+		48876	28988	40536	40564							0.051568342258860866
RLAWAEKDL	9	Unmodified	_RLAWAEKDL_					0	0	0			REV__nc|ENSG00000168071|A6NC98-5|CCDC88B	REV__nc|ENSG00000168071|A6NC98-5|CCDC88B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	551.306198	1100.59784	0.41269	0.00022752	-4.4411	-0.0024484	-4.0284	-0.0022209	551.3036441935676	45.683	1.0493	42.973	42.597	43.646	-2.7097	0.035372	-0.00066519	NaN	49.442	57	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106650	+		48877	28988	40536	40564							0.051568342258860866
RLAWAEKDL	9	Unmodified	_RLAWAEKDL_					0	0	0			REV__nc|ENSG00000168071|A6NC98-5|CCDC88B	REV__nc|ENSG00000168071|A6NC98-5|CCDC88B	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	551.306198	1100.59784	-0.92402	-0.00050942	-3.066	-0.0016903	-3.99	-0.0021997	551.3045019842067	45.878	1.3513	42.806	42.509	43.86	-3.0724	-0.13228	0.00085105	NaN	49.442	75	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	468990	+		48878	28988	40536	40564							0.051568342258860866
RLAWVAHKTL	10	Unmodified	_RLAWVAHKTL_					0	0	0		TBRG4|p.I596Dfs*8|1|0.09|ENSG00000136270|chr7:45101267-45101268|-/T|frameshift_variant;ENSG00000136270|ENST00000258770|TBRG4;ENST00000471142.5_1_7:45147368-45148836:-|nuORF;nc|ENSG00000136270|Q969Z0-2|TBRG4	TBRG4|p.I596Dfs*8|1|0.09|ENSG00000136270|chr7:45101267-45101268|-/T|frameshift_variant;nc|ENSG00000136270|Q969Z0-2|TBRG4	TBRG4|p.I596Dfs*8|1|0.09|ENSG00000136270|chr7:45101267-45101268|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	597.824951171875	2	597.858932	1193.70331	-4.0655	-0.0024306	-0.34635	-0.00020707	-4.4118	-0.0026376	597.8584578436438	152.3	1.032	152.07	151.7	152.73	-0.22697					45	20	3	0	0	0	0.026994	1	15542	15542		19.104	0	1	33678			48879	4479;15036	40537	40565	52519	52519					0.11420795142180395
RLCLLLKNL	9	Unmodified	_RLCLLLKNL_					0	0	0		tr|A0A7D7A393|A0A7D7A393_9CLOTPhageheadclosureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11790PE=4SV=1	tr|A0A7D7A393|A0A7D7A393_9CLOTPhageheadclosureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11790PE=4SV=1	tr|A0A7D7A393|A0A7D7A393_9CLOTPhageheadclosureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11790PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.8150634765625	2	543.346812	1084.67907	-0.53482	-0.0002906	-2.2518	-0.0012235	-2.7866	-0.0015141	543.8472396339876	43.334	0.38062	43.334	43.227	43.608	0					13	8	2	0	0	0	0.027462	1	2874	2874		40.573	3.5441	1	135300			48880	36109	40538	40566	52520	52520					0.1401181866431216
RLDAVLQRI	9	Unmodified	_RLDAVLQRI_					0	0	0		nc|ENSG00000140464|P29590-11|PML;ENSG00000140464|ENST00000268058|PML;ENST00000564725.1_1_15:74290377-74317280:+|nuORF;nc|ENSG00000140464|P29590-14|PML;nc|ENSG00000140464|P29590-10|PML;nc|ENSG00000140464|P29590-4|PML;nc|ENSG00000140464|P29590-12|PML;nc|ENSG00000140464|P29590-2|PML;nc|ENSG00000140464|P29590-5|PML;nc|ENSG00000140464|P29590-9|PML;ENST00000569161.1_1_15:74315283-74324931:+|nuORF;nc|ENSG00000140464|P29590-13|PML;nc|ENSG00000140464|P29590-3|PML;nc|ENSG00000140464|P29590-8|PML	nc|ENSG00000140464|P29590-11|PML;nc|ENSG00000140464|P29590-13|PML	nc|ENSG00000140464|P29590-13|PML	MSMS	OvCa99_classI_Rep5	1	542.3363647460938	2	542.33529	1082.65603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.624	1	84.624	84.124	85.124	0								0	0	0	0.02477	1	8849	8849		101.25	18.502	1				48881	15055;4843	40539	40567	52521	52521					0.1180051587118669
RLDAVLQRI	9	Unmodified	_RLDAVLQRI_					0	0	0		nc|ENSG00000140464|P29590-11|PML;ENSG00000140464|ENST00000268058|PML;ENST00000564725.1_1_15:74290377-74317280:+|nuORF;nc|ENSG00000140464|P29590-14|PML;nc|ENSG00000140464|P29590-10|PML;nc|ENSG00000140464|P29590-4|PML;nc|ENSG00000140464|P29590-12|PML;nc|ENSG00000140464|P29590-2|PML;nc|ENSG00000140464|P29590-5|PML;nc|ENSG00000140464|P29590-9|PML;ENST00000569161.1_1_15:74315283-74324931:+|nuORF;nc|ENSG00000140464|P29590-13|PML;nc|ENSG00000140464|P29590-3|PML;nc|ENSG00000140464|P29590-8|PML	nc|ENSG00000140464|P29590-11|PML;nc|ENSG00000140464|P29590-13|PML	nc|ENSG00000140464|P29590-13|PML	MSMS	OvCa99_classI_Rep5	1	542.3369140625	2	542.33529	1082.65603	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.832	1	84.832	84.332	85.332	0								0	0	0	0.0096097	1	8878	8878		141.52	34.513	1				48882	15055;4843	40539	40567	52522	52522					0.1180051587118669
RLDELGGVYL	10	Unmodified	_RLDELGGVYL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	OvCa9_classI_Rep3	3	567.810546875	2	567.811313	1133.60807	0.016962	9.6314E-06	-0.19743	-0.0001121	-0.18047	-0.00010247	567.811208678959	114.23	1.3057	113.18	112.79	114.09	-1.055					67	25	3	0	0	0	0.62712	1	8435	8435		38.754	8.4359	1	291700			48883	3322	40540	40568	52523	52523					0.04661397160475644
RLDELGGVYL	10	Unmodified	_RLDELGGVYL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.8106079101562	2	567.811313	1133.60807	1.1573	0.00065714	-1.5196	-0.00086283	-0.36226	-0.00020569	567.8104047215598	114.57	1.2429	113.17	112.68	113.92	-1.3977					54	23	3	0	0	0	0.6349	1	10666	10666		37.812	2.6108	1	327710			48884	3322	40540	40568	52524	52524					0.04661397160475644
RLDEVKEQV	9	Unmodified	_RLDEVKEQV_					0	0	0		ENSG00000130203|ENST00000252486|APOE	ENSG00000130203|ENST00000252486|APOE	ENSG00000130203|ENST00000252486|APOE	MULTI-MSMS	OvCa99_classI_Rep5	1	558.3085327148438	2	558.306395	1114.59824	-0.42409	-0.00023677	-0.16411	-9.1625E-05	-0.5882	-0.0003284	558.3063196045389	50.052	1.3984	50.052	49.679	51.078	0					93	31	5	0	0	0	0.012992	2	3786	3762;3786		159.28	10.289	1	10513000			48885	3967	40541	40569	52525;52526	52526					0.04552209155099263
RLDGHLWNS	9	Unmodified	_RLDGHLWNS_					0	0	0			REV__ENST00000455397.5_1_1:151337021-151341586:-|nuORF	REV__ENST00000455397.5_1_1:151337021-151341586:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	549.2823486328125	2	549.277972	1096.54139	1.508	0.00082832	1.371	0.00075308	2.8791	0.0015814	549.2780894921569	90.648	1.0632	90.648	90.269	91.332	0					61	26	3	0	0	0	0.26076	1	9701	9701		67.494	10.773	1	1930600	+		48886	19840	40542	40570	52527	52527					-0.0030179361078808142
RLDISNKTY	9	Unmodified	_RLDISNKTY_					0	0	0		nc|ENSG00000088280|Q8TDY4-3|ASAP3;ENSG00000088280|ENST00000336689|ASAP3;nc|ENSG00000088280|Q8TDY4-2|ASAP3	nc|ENSG00000088280|Q8TDY4-3|ASAP3	nc|ENSG00000088280|Q8TDY4-3|ASAP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.3445434570312	2	555.301113	1108.58767	-0.36358	-0.0002019	-2.4263	-0.0013473	-2.7898	-0.0015492	555.3007309631676	68.417	0.49119	68.417	68.114	68.606	0					15	11	2	0	0	0	0.027433	1	6418	6418		71.296	9.1883	1	142890			48887	1786	40543	40571	52528	52528					0.03772226500677789
RLDKTEQSL	9	Unmodified	_RLDKTEQSL_					0	0	0		ENSG00000169641|ENST00000302291|LUZP1;LUZP1|p.P700Afs*20|1|0.05|ENSG00000169641|chr1:23092164-23092165|-/GC|frameshift_variant;LUZP1|p.R817Sfs*50|1|0.07|ENSG00000169641|chr1:23091811-23091811|C/-|frameshift_variant;nc|ENSG00000169641|Q86V48-2|LUZP1;LUZP1|p.S996Rfs*52|1|0.05|ENSG00000169641|chr1:23091274-23091275|-/T|frameshift_variant;nc|ENSG00000169641|Q86V48-3|LUZP1	ENSG00000169641|ENST00000302291|LUZP1	ENSG00000169641|ENST00000302291|LUZP1	MULTI-MSMS	OvCa99_classI_Rep5	1	545.2978515625	2	545.29857	1088.58259	-0.38707	-0.00021107	-0.050816	-2.771E-05	-0.43789	-0.00023878	545.2984655636503	40.689	0.94087	40.689	40.479	41.42	0					37	20	2	0	0	0	0.22035	1	2485	2485		72.879	14.649	1	1659900			48888	7026	40544	40572	52529	52529					0.04183922638048898
RLDLGLGRAPG	11	Unmodified	_RLDLGLGRAPG_					0	0	0		tr|A0A553SN94|A0A553SN94_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_24035PE=4SV=1	tr|A0A553SN94|A0A553SN94_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_24035PE=4SV=1	tr|A0A553SN94|A0A553SN94_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_24035PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	562.8316040039062	2	562.830372	1123.64619	0.81588	0.0004592	-1.3749	-0.00077385	-0.55904	-0.00031465	562.8296303486356	67.278	2.4843	67.278	66.7	69.184	0					188	61	5	0	0	0	0.080408	2	6269	6269;6298		101.25	0	1	92664000			48889	33910	40545	40573	52530;52531	52530					0.08931327865798266
RLDLGLGRAPG	11	Unmodified	_RLDLGLGRAPG_					0	0	0		tr|A0A553SN94|A0A553SN94_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_24035PE=4SV=1	tr|A0A553SN94|A0A553SN94_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_24035PE=4SV=1	tr|A0A553SN94|A0A553SN94_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_24035PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	562.830372	1123.64619	0.35873	0.0002019	-0.68459	-0.00038531	-0.32586	-0.0001834	562.8296899727949	70.108	1.2064	67.538	67.115	68.322	-2.5707	0.13002	0.00071425	NaN	101.25	43	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43791			48890	33910	40545	40573							0.08931327865798266
RLDLLRLNP	9	Unmodified	_RLDLLRLNP_					0	0	0			REV__nc|ENSG00000182325|Q8N531-2|FBXL6	REV__nc|ENSG00000182325|Q8N531-2|FBXL6	MULTI-MSMS	OvCa99_classI_Rep5	1	555.3445434570312	2	555.343115	1108.67168	-0.48526	-0.00026949	0.22149	0.000123	-0.26377	-0.00014649	555.3431208932009	68.211	1.1773	68.211	67.842	69.019	0					78	28	4	0	0	0	0.19758	1	6418	6418		76.774	4.8967	1	7828100	+		48891	22280	40546	40574	52532	52532					0.12168802388214317
RLDLPVTTR	9	Unmodified	_RLDLPVTTR_					0	0	0		YY1AP1-ARHGEF2|2|fusion;YY1AP1-ARHGEF2|3|fusion;YY1AP1-ARHGEF2|1|fusion;YY1AP1-ARHGEF2|14|fusion;YY1AP1-ARHGEF2|13|fusion;YY1AP1-ARHGEF2|8|fusion;YY1AP1-ARHGEF2|7|fusion;YY1AP1-ARHGEF2|16|fusion;YY1AP1-ARHGEF2|15|fusion;YY1AP1-ARHGEF2|4|fusion;YY1AP1-ARHGEF2|6|fusion;YY1AP1-ARHGEF2|5|fusion;YY1AP1-ARHGEF2|12|fusion;YY1AP1-ARHGEF2|11|fusion;YY1AP1-ARHGEF2|10|fusion;YY1AP1-ARHGEF2|9|fusion;ENSG00000116584|ENST00000361247|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;nc|ENSG00000116584|Q92974-3|ARHGEF2	YY1AP1-ARHGEF2|2|fusion	YY1AP1-ARHGEF2|2|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	535.818603515625	2	535.819473	1069.62439	0.21719	0.00011637	-0.50778	-0.00027208	-0.29059	-0.0001557	535.819299049076	62.955	0.71572	62.955	62.621	63.337	0					54	17	6	0	0	0	0.20111	1	5634	5634		76.17	14.478	1	6201200			48892	36311	40547	40575	52533	52533					0.09236523117237994
RLDLSHCSH	9	Carbamidomethyl (C)	_RLDLSHC(Carbamidomethyl (C))SH_	RLDLSHC(1)SH		RLDLSHC(88)SH		0	1	0		ENSG00000173120|ENST00000529006|KDM2A;nc|ENSG00000173120|Q9Y2K7-4|KDM2A;nc|ENSG00000173120|Q9Y2K7-5|KDM2A;nc|ENSG00000173120|Q9Y2K7-2|KDM2A;ENST00000524657.1_1_11:67020024-67022523:+|nuORF	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.8321533203125	2	562.766914	1123.51928	1.2699	0.00071466	1.1205	0.00063057	2.3904	0.0013452	562.7674913103948	67.003	0.70851	67.003	66.739	67.448	0					41	17	3	0	0	0	0.027137	1	6241	6241		87.696	18.91	1	863270			48893	7350	40548	40576	52534	52534	71				-0.037543413508501544
RLDNYNDTSL	10	Unmodified	_RLDNYNDTSL_					0	0	0		ENSG00000160683|ENST00000292174|CXCR5	ENSG00000160683|ENST00000292174|CXCR5	ENSG00000160683|ENST00000292174|CXCR5	MULTI-SECPEP	OvCa99_classI_Rep5	1	605.8255004882812	2	605.788566	1209.56258	2.664	0.0016138	3.2613	0.0019757	5.9253	0.0035895	606.2920748300834	90.44	0.19388	90.44	90.31	90.504	0					7	4	3	0	0	0	0.026891	1	9683	9683		47.657	22.083	1	588700			48894	6079	40549	40577	52535	52535					-0.03381873092553178
RLDQNQPRV	9	Unmodified	_RLDQNQPRV_					0	0	0		nc|ENSG00000100767|O95428-2|PAPLN;ENST00000557061.5_1_14:73729237-73739369:+|nuORF;nc|ENSG00000100767|O95428-6|PAPLN;nc|ENSG00000100767|O95428-5|PAPLN;ENSG00000100767|ENST00000644200|PAPLN;nc|ENSG00000100767|O95428-4|PAPLN	nc|ENSG00000100767|O95428-2|PAPLN	nc|ENSG00000100767|O95428-2|PAPLN	MULTI-MSMS	OvCa99_classI_Rep5	1	563.3092041015625	2	563.309803	1124.60505	0.11195	6.3063E-05	-0.080747	-4.5486E-05	0.031204	1.7578E-05	563.3096599675077	40.614	0.76513	40.614	40.294	41.059	0					34	16	3	0	0	0	0.2077	1	2480	2480		75.043	20.267	1	587630			48895	2104	40550	40578	52536	52536					0.047735668263158004
RLDSDEQKI	9	Unmodified	_RLDSDEQKI_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;ENSG00000164944|ENST00000297591|VIRMA;ENST00000521080.5_1_8:95511544-95524374:-|nuORF	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MSMS	OvCa99_classI_Rep5	1	552.288818359375	2	552.288202	1102.56185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.001	1	41.001	40.501	41.501	0								0	0	0	0.031623	1	2530	2530		88.177	11.403	1				48896	15150	40551	40579	52537	52537					0.014673322583803383
RLDSRPRIL	9	Unmodified	_RLDSRPRIL_					0	0	0		tr|A0A7D6ZI05|A0A7D6ZI05_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_02110PE=3SV=1	tr|A0A7D6ZI05|A0A7D6ZI05_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_02110PE=3SV=1	tr|A0A7D6ZI05|A0A7D6ZI05_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_02110PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.349609375	2	563.346189	1124.67783	1.893	0.0010664	1.3197	0.00074344	3.2127	0.0018098	563.3468115501491	89.862	1.6698	87.287	86.851	88.52	-2.575					88	32	3	0	0	0	0.59259	1	7755	7755		32.812	2.4947	1	492310			48897	35598	40552	40580	52538	52538					0.12047320619763013
RLEALPNSL	9	Unmodified	_RLEALPNSL_					0	0	0		ENSG00000099769|ENST00000215539|IGFALS;nc|ENSG00000099769|P35858-2|IGFALS	ENSG00000099769|ENST00000215539|IGFALS	ENSG00000099769|ENST00000215539|IGFALS	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.7937316894531	2	506.792924	1011.57129	-1.0602	-0.00053728	2.1109	0.0010698	1.0508	0.00053253	506.79309840120874	53.137	1.6181	49.929	49.502	51.12	-3.208					95	31	5	0	0	0	0.37135	1	3243	3243		54.776	1.8396	1	1022800			48898	1975	40553	40581	52539	52539					0.06597145334569632
RLEARVVAR	9	Unmodified	_RLEARVVAR_					0	0	0			REV__ENST00000529503.5_1_8:145137494-145138312:+|nuORF	REV__ENST00000529503.5_1_8:145137494-145138312:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	535.3060913085938	2	535.333082	1068.65161	-0.78487	-0.00042017	2.5706	0.0013762	1.7858	0.00095599	535.3342981521391	110.14	0.59248	109.96	109.71	110.3	-0.17237					22	11	3	0	0	0	0.027462	1	10332	10332		16.473	8.7829	1	50913	+		48899	27193	40554	40582	52540	52540					0.12003051448255064
RLEAVSHSL	9	Unmodified	_RLEAVSHSL_					0	0	0			REV__nc|ENSG00000131149|Q14687-2|GSE1	REV__nc|ENSG00000131149|Q14687-2|GSE1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.7571716308594	2	506.282723	1010.55089	-4.6067	-0.0023323	-1.0352	-0.00052411	-5.6419	-0.0028564	506.28223542553025	154.43	0.50586	152.98	152.8	153.3	-1.4516					16	10	2	0	0	0	0.027462	1	15319	15319		47.916	5.5195	1	20315	+		48900	19000	40555	40583	52541	52541					0.04603974674762412
RLEAVSHSL	9	Unmodified	_RLEAVSHSL_					0	0	0			REV__nc|ENSG00000131149|Q14687-2|GSE1	REV__nc|ENSG00000131149|Q14687-2|GSE1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	506.282723	1010.55089	-5.8967	-0.0029854	0.27841	0.00014096	-5.6183	-0.0028444	506.28281501055574	153.94	0.52786	152.93	152.74	153.27	-1.0076	-0.023865	0.00084986	NaN	47.916	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16310	+		48901	19000	40555	40583							0.04603974674762412
RLECTGVIL	9	Unmodified	_RLECTGVIL_					0	0	0		ENST00000533041.5_1_2:85922010-85923777:+|nuORF	ENST00000533041.5_1_2:85922010-85923777:+|nuORF	ENST00000533041.5_1_2:85922010-85923777:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	502.2832336425781	2	502.283877	1002.5532	-0.90353	-0.00045383	-2.6919	-0.0013521	-3.5954	-0.0018059	502.28234158523946	94.835	2.2552	92.939	92.662	94.917	-1.8956					108	44	3	0	0	0	0.44568	1	6164	6164		47.657	3.5405	1	1463600			48902	13333	40556	40584	52542	52542					0.05202687088217317
RLEDLGELH	9	Unmodified	_RLEDLGELH_					0	0	0		ENST00000450277.2_1_17:18523453-18528799:-|nuORF;nc|ENSG00000291074|Q6NUI1|CCDC144NL;ENST00000340196.8_1_17:20224590-20239407:+|nuORF;ENST00000399264.1_1_17:16593591-16608727:+|nuORF;ENST00000445752.5_1_17:18506915-18528649:-|nuORF;nc|ENSG00000291090|Q3MJ40-2|CCDC144BP;nc|ENSG00000291090|Q3MJ40|CCDC144BP;nc|ENSG00000266302|A2RUR9-3|CCDC144A;nc|ENSG00000154898|Q8IYA2|CCDC144CP;ENSG00000170160|ENST00000399273|CCDC144A;nc|ENSG00000266302|A2RUR9|CCDC144A	ENST00000450277.2_1_17:18523453-18528799:-|nuORF	ENST00000450277.2_1_17:18523453-18528799:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.33349609375	2	541.285463	1080.55637	-0.96002	-0.00051964	-2.7749	-0.001502	-3.7349	-0.0020217	541.2837389492009	27.857	0.20024	27.857	27.741	27.941	0					5	3	2	0	0	0	0.027462	1	856	856		30.504	14.03	1	19115			48903	7077	40557	40585	52543	52543					0.019316534665676954
RLEELARG	8	Unmodified	_RLEELARG_					0	0	0			REV__ENST00000493335.5_1_22:31489433-31491914:+|nuORF	REV__ENST00000493335.5_1_22:31489433-31491914:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	472.2700500488281	2	472.269616	942.524678	-0.35708	-0.00016864	0.70457	0.00033275	0.34749	0.00016411	472.2696482777979	41.442	0.78702	41.442	41.195	41.982	0					35	17	3	0	0	0	0.58851	1	2587	2587		66.429	6.311	1	748550	+		48904	26704	40558	40586	52544	52544					0.05111705503293251
RLEELARG	8	Unmodified	_RLEELARG_					0	0	0			REV__ENST00000493335.5_1_22:31489433-31491914:+|nuORF	REV__ENST00000493335.5_1_22:31489433-31491914:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	472.269616	942.524678	-0.35708	-0.00016864	0.70457	0.00033275	0.34749	0.00016411	472.2696482777979	41.442	0.78702	41.442	41.195	41.982	0	-0.19165	-0.0018202	NaN	66.429	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	748550	+		48905	26704	40558	40586							0.05111705503293251
RLEELARG	8	Unmodified	_RLEELARG_					0	0	0			REV__ENST00000493335.5_1_22:31489433-31491914:+|nuORF	REV__ENST00000493335.5_1_22:31489433-31491914:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	472.269616	942.524678	-0.28732	-0.00013569	7.8135	0.0036901	7.5262	0.0035544	472.2732296948734	44.864	0.67016	41.825	41.663	42.334	-3.0385	0.19165	0.0048945	NaN	66.429	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18257	+		48906	26704	40558	40586							0.05111705503293251
RLEGDLPSR	9	Unmodified	_RLEGDLPSR_					0	0	0		ENST00000255198.2_2_5:76382942-76383074:-|nuORF	ENST00000255198.2_2_5:76382942-76383074:-|nuORF	ENST00000255198.2_2_5:76382942-76383074:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.3128662109375	2	521.78563	1041.55671	-0.50388	-0.00026292	0.7422	0.00038727	0.23832	0.00012435	521.7853770958767	60.919	0.46768	60.919	60.646	61.113	0					16	9	2	0	0	0	0.027444	1	5322	5322		54.722	0	1	355960			48907	9820	40559	40587	52545	52545					0.037590731864156623
RLEGRLTQ	8	Unmodified	_RLEGRLTQ_					0	0	0			REV__ENST00000486520.1_1_21:48081621-48084236:+|nuORF	REV__ENST00000486520.1_1_21:48081621-48084236:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	486.78271484375	2	486.78289	971.551228	0.43908	0.00021374	-0.52243	-0.00025431	-0.083348	-4.0573E-05	486.7825302648535	31.131	0.98493	28.421	28.248	29.233	-2.7097					37	19	4	0	0	0	0.73766	1	913	913		32.812	6.0163	1	171450	+		48908	26586	40560	40588	52546	52546					0.06431394394610379
RLEIREKL	8	Unmodified	_RLEIREKL_					0	0	0			REV__ENST00000483925.1_1_2:86343697-86346172:+|nuORF	REV__ENST00000483925.1_1_2:86343697-86346172:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	528.8319091796875	2	528.82984	1055.64513	-1.2606	-0.00066662	3.5547	0.0018798	2.2941	0.0012132	528.8315788748213	83.741	3.631	81.48	80.867	84.498	-2.261					148	74	4	0	0	0	0.53252	1	4820	4820		74.255	0	1	1382900	+		48909	19065	40561	40589	52547	52547					0.11953113496883816
RLEKDPIV	8	Unmodified	_RLEKDPIV_					0	0	0			REV__tr|A0A7D6W2I1|A0A7D6W2I1_9CLOTcysteine-S-conjugatebeta-lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06170PE=3SV=1	REV__tr|A0A7D6W2I1|A0A7D6W2I1_9CLOTcysteine-S-conjugatebeta-lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06170PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	485.28875732421875	2	485.290017	968.565481	0.67971	0.00032986	-3.7324	-0.0018113	-3.0527	-0.0014814	485.2880610480828	30.452	1.281	27.743	27.557	28.838	-2.7097					46	25	3	0	0	0	0.745	1	833	833		29.15	2.3535	1	148120	+		48910	31900	40562	40590	52548	52548					0.07994046822886958
RLEKKVVLDV	10	Unmodified	_RLEKKVVLDV_					0	0	0			REV__ENSG00000183624|ENST00000383463|HMCES	REV__ENSG00000183624|ENST00000383463|HMCES	MSMS	OvCa99_classI_Rep5	1	400.59136962890625	3	400.255446	1197.74451	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.493	1	20.493	19.993	20.993	0								0	0	0	0.14572	1	32	32		16.717	1.8525	1		+		48911	22371	40563	40591	52549	52549					0.15354511390978587
RLELVQQAH	9	Unmodified	_RLELVQQAH_					0	0	0			REV__ENSG00000215912|ENST00000401095|TTC34	REV__ENSG00000215912|ENST00000401095|TTC34	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.3295288085938	2	547.309272	1092.60399	-1.2485	-0.00068333	-0.53328	-0.00029187	-1.7818	-0.0009752	547.3088251670944	64.035	0.89112	64.035	63.57	64.461	0					61	21	4	0	0	0	0.027047	1	5806	5806		99.375	0	1	656990	+		48912	23322	40564	40592	52550	52550					0.0613935245742141
RLEPIPSTL	9	Unmodified	_RLEPIPSTL_					0	0	0			REV__ENST00000533210.5_1_8:144650405-144650852:-|nuORF	REV__ENST00000533210.5_1_8:144650405-144650852:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.8011474609375	2	513.303124	1024.5917	1.6699	0.00085715	-0.67604	-0.00034701	0.99383	0.00051014	513.3027436972003	118.61	0.70638	118.61	118.2	118.91	0					23	14	3	0	0	0	0.027448	1	13600	13600		53.351	0	1	135230	+		48913	27256	40565	40593	52551	52551					0.0803831599437217
RLEREAGP	8	Unmodified	_RLEREAGP_					0	0	0			REV__nc|ENSG00000112425|B3EWF7|EPM2A	REV__nc|ENSG00000112425|B3EWF7|EPM2A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.2790222167969	2	464.253966	926.493378	-0.18317	-8.5037E-05	-2.2218	-0.0010315	-2.405	-0.0011165	464.25273834212067	75.828	0.24386	72.889	72.741	72.985	-2.9389					6	4	2	0	0	0	0.028476	1	5986	5986		35.201	0	1	11553	+		48914	28800	40566	40594	52552	52552					0.027191324691784757
RLERIIEIR	9	Unmodified	_RLERIIEIR_					0	0	0			REV__tr|A0A553SJ12|A0A553SJ12_NIACIUvrABCsystemproteinBOS=NialliacirculansOX=1397GN=uvrBPE=3SV=1	REV__tr|A0A553SJ12|A0A553SJ12_NIACIUvrABCsystemproteinBOS=NialliacirculansOX=1397GN=uvrBPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	599.3760375976562	2	599.374946	1196.73534	-0.50806	-0.00030452	0.21227	0.00012723	-0.29579	-0.00017729	599.3750130838728	69.686	1.1324	69.686	69.433	70.565	0					65	27	4	0	0	0	0.28934	1	6660	6660		64.207	7.4862	1	5499500	+		48915	29954	40567	40595	52553	52553					0.14484162825306157
RLERTKDQKRR	11	Unmodified	_RLERTKDQKRR_					0	0	0			REV__ENST00000478241.6_2_12:56223566-56224012:+|nuORF	REV__ENST00000478241.6_2_12:56223566-56224012:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	495.95855712890625	3	495.962207	1484.86479	-6.9468	-0.0034453	-0.084622	-4.1969E-05	-7.0314	-0.0034873	495.96210445138047	163.05	2.2058	161.66	160.17	162.38	-1.3926					163	48	5	0	0	0	0.72511	3	14226	14116;14226;14238		14.086	2.9893	1	227040	+		48916	26409	40568	40596	52554;52555;52556	52555					0.14175312437282628
RLERVGLTE	9	Unmodified	_RLERVGLTE_					0	0	0		tr|A0A553SSL3|A0A553SSL3_NIACINitratereductasesubunitbetaOS=NialliacirculansOX=1397GN=narHPE=4SV=1	tr|A0A553SSL3|A0A553SSL3_NIACINitratereductasesubunitbetaOS=NialliacirculansOX=1397GN=narHPE=4SV=1	tr|A0A553SSL3|A0A553SSL3_NIACINitratereductasesubunitbetaOS=NialliacirculansOX=1397GN=narHPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	536.808349609375	2	536.809105	1071.60366	0.23953	0.00012858	-0.72479	-0.00038907	-0.48525	-0.00026049	536.808594253858	65.887	1.3438	63.191	62.771	64.114	-2.6958					79	26	4	0	0	0	0.49652	1	5073	5073		42.864	3.6114	1	1324500			48917	34388	40569	40597	52557	52557					0.0707193273754001
RLESFRKNV	9	Unmodified	_RLESFRKNV_					0	0	0			REV__tr|A0A553SRV5|A0A553SRV5_NIACIPhytoenedesaturaseOS=NialliacirculansOX=1397GN=crtIPE=3SV=1	REV__tr|A0A553SRV5|A0A553SRV5_NIACIPhytoenedesaturaseOS=NialliacirculansOX=1397GN=crtIPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	574.3095092773438	2	574.830372	1147.64619	0.25909	0.00014893	1.9535	0.0011229	2.2126	0.0012719	574.8313918470692	127.86	0.49179	127.64	127.49	127.98	-0.22696					16	9	2	0	0	0	0.027462	1	12499	12499		17.365	1.7232	1	12508	+		48918	30769	40570	40598	52558	52558					0.07827327865788902
RLESFRKNV	9	Unmodified	_RLESFRKNV_					0	0	0			REV__tr|A0A553SRV5|A0A553SRV5_NIACIPhytoenedesaturaseOS=NialliacirculansOX=1397GN=crtIPE=3SV=1	REV__tr|A0A553SRV5|A0A553SRV5_NIACIPhytoenedesaturaseOS=NialliacirculansOX=1397GN=crtIPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	574.830372	1147.64619	0.11968	6.8794E-05	1.8345	0.0010545	1.9542	0.0011233	574.8311564752504	128.93	0.3952	127.84	127.67	128.06	-1.0933	0.10971	0.00017726	NaN	17.365	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10672	+		48919	30769	40570	40598							0.07827327865788902
RLESFRKNV	9	Unmodified	_RLESFRKNV_					0	0	0			REV__tr|A0A553SRV5|A0A553SRV5_NIACIPhytoenedesaturaseOS=NialliacirculansOX=1397GN=crtIPE=3SV=1	REV__tr|A0A553SRV5|A0A553SRV5_NIACIPhytoenedesaturaseOS=NialliacirculansOX=1397GN=crtIPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	574.830372	1147.64619	0.69768	0.00040105	1.4509	0.00083402	2.1486	0.0012351	574.8309748559052	129.17	0.4433	127.72	127.55	127.99	-1.4565	-0.013556	-0.00026378	NaN	17.365	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17608	+		48920	30769	40570	40598							0.07827327865788902
RLESKIREH	9	Unmodified	_RLESKIREH_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3333740234375	2	584.333279	1166.652	-1.2681	-0.00074098	1.169	0.00068311	-0.099028	-5.7866E-05	584.3339090960189	33.507	1.6858	30.797	30.571	32.257	-2.7097					89	33	4	0	0	0	0.17606	2	1197	1197;1223		80.455	12.961	1	807420			48921	2808	40571	40599	52559;52560	52559					0.07534426377446835
RLESKIREH	9	Unmodified	_RLESKIREH_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3325805664062	2	584.333279	1166.652	-0.83617	-0.0004886	0.86808	0.00050725	0.031911	1.8647E-05	584.3338231558395	21.184	1.6832	19.846	19.548	21.231	-1.3386					110	33	5	0	0	0	0.051592	5	144	132;144;169;181;206		117.81	32.454	1	1661100			48922	2808	40571	40599	52561;52562;52563;52564;52565	52562					0.07534426377446835
RLETEKPSV	9	Unmodified	_RLETEKPSV_					0	0	0			REV__nc|ENSG00000204361|Q96DL1-3|NXPE2	REV__nc|ENSG00000204361|Q96DL1-3|NXPE2	MSMS	OvCa9_classI_Rep4_	4	529.795166015625	2	529.795663	1057.57677	NaN	NaN	NaN	NaN	NaN	NaN	NaN	104.57	1	102.45	101.95	102.95	-2.1192								0	0	0	0.17066	1	9468	9468		49.442	0	1		+		48923	23149	40572	40600	52566	52566					0.05028824126384279
RLEVAPLEK	9	Unmodified	_RLEVAPLEK_					0	0	0			REV__nc|ENSG00000140455|Q9Y6I4-2|USP3	REV__nc|ENSG00000140455|Q9Y6I4-2|USP3	MULTI-MSMS	OvCa9_classI_Rep2	2	527.81787109375	2	527.816399	1053.61824	0.15404	8.1304E-05	3.6765	0.0019405	3.8305	0.0020218	527.8180746611931	131.65	2.3091	131.42	131.15	133.46	-0.22696					124	46	4	0	0	0	0.38969	1	12995	12995		52.937	3.4007	1	610490	+		48924	19674	40573	40601	52567	52567					0.09358004885712035
RLEWQWSRRYL	11	Unmodified	_RLEWQWSRRYL_					0	0	0			REV__ENST00000321680.10_1_6:147527107-147527200:+|nuORF	REV__ENST00000321680.10_1_6:147527107-147527200:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	531.6204223632812	3	531.61967	1591.83718	-0.81574	-0.00043367	-0.18463	-9.8155E-05	-1.0004	-0.00053182	531.6195675417047	26.611	0.89878	26.611	26.342	27.241	0					46	17	5	0	0	0	0.72528	1	704	704		11.932	5.6115	1	153050	+		48925	24451	40574	40602	52568	52568					0.06493409177073772
RLEWVYGY	8	Unmodified	_RLEWVYGY_					0	0	0		nc|ENSG00000165521|Q05BV3|EML5;ENSG00000165521|ENST00000554922|EML5;nc|ENSG00000165521|Q05BV3-4|EML5;nc|ENSG00000165521|Q05BV3-2|EML5;nc|ENSG00000214595|Q6ZMW3-2|EML6;ENSG00000214595|ENST00000356458|EML6	nc|ENSG00000165521|Q05BV3|EML5;nc|ENSG00000214595|Q6ZMW3-2|EML6	nc|ENSG00000214595|Q6ZMW3-2|EML6	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7996826171875	2	543.274367	1084.53418	-0.32105	-0.00017442	4.466	0.0024263	4.145	0.0022519	543.2773566337919	65.287	0.55227	65.287	64.955	65.507	0					27	13	3	0	0	0	0.028476	1	5992	5992		39.021	13.571	1	511290			48926	6573;9175	40575	40603	52569	52569					-0.004705262112111086
RLFAAELVL	9	Unmodified	_RLFAAELVL_					0	0	0		nc|ENSG00000167524|Q96LW2-3|RSKR;nc|ENSG00000167524|Q96LW2|RSKR;ENSG00000167524|ENST00000301037|RSKR	nc|ENSG00000167524|Q96LW2-3|RSKR	nc|ENSG00000167524|Q96LW2-3|RSKR	MULTI-MSMS	OvCa99_classI_Rep5	1	516.3165893554688	2	516.316035	1030.61752	0.88827	0.00045863	-1.6695	-0.00086197	-0.7812	-0.00040335	516.3150183040137	131.36	0.70656	131.36	131.01	131.72	0					23	14	2	0	0	0	0.63422	1	15251	15251		27.882	0	1	175850			48927	6796	40576	40604	52570	52570					0.10343210236624145
RLFDQAFGL	9	Unmodified	_RLFDQAFGL_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MSMS	OvCa99_classI_Rep5	1	533.7887573242188	2	533.787641	1065.56073	2.5573	0.0013651	-0.49602	-0.00026477	2.0613	0.0011003	533.787216574619	121.36	0.79391	121.36	121.1	121.9	0					33	17	3	0	0	0	0.22621	1	13957	13957		71.877	25.926	1	643920			48928	2535	40577	40605	52571	52571					0.030571626801247476
RLFFPCTV	8	Unmodified	_RLFFPCTV_					0	0	0			REV__ENST00000497425.1_1_2:166736340-166740450:-|nuORF	REV__ENST00000497425.1_1_2:166736340-166740450:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	491.7611083984375	2	491.762581	981.510608	-0.46717	-0.00022974	-3.1456	-0.0015469	-3.6127	-0.0017766	491.76087658108725	69.752	1.0235	66.271	66.009	67.032	-3.4812					47	20	3	0	0	0	0.73938	1	5242	5242		31.955	1.4512	1	441130	+		48929	26778	40578	40606	52572	52572					0.019113367506179202
RLFFPCTV	8	Unmodified	_RLFFPCTV_					0	0	0			REV__ENST00000497425.1_1_2:166736340-166740450:-|nuORF	REV__ENST00000497425.1_1_2:166736340-166740450:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	491.762581	981.510608	-0.22735	-0.0001118	-3.1324	-0.0015404	-3.3597	-0.0016522	491.7608449142758	68.907	0.79634	66.287	65.869	66.665	-2.6203	0.0081144	9.3726E-06	NaN	31.955	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94924	+		48930	26778	40578	40606							0.019113367506179202
RLFFPCTV	8	Unmodified	_RLFFPCTV_					0	0	0			REV__ENST00000497425.1_1_2:166736340-166740450:-|nuORF	REV__ENST00000497425.1_1_2:166736340-166740450:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	491.762581	981.510608	-0.46717	-0.00022974	-3.1456	-0.0015469	-3.6127	-0.0017766	491.76087658108725	69.752	1.0235	66.271	66.009	67.032	-3.4812	-0.0081144	-3.6014E-06	NaN	31.955	47	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	441130	+		48931	26778	40578	40606							0.019113367506179202
RLFGGLILDI	10	Unmodified	_RLFGGLILDI_					0	0	0		nc|ENSG00000033867|Q9Y6M7-4|SLC4A7;nc|ENSG00000033867|Q9Y6M7-2|SLC4A7;nc|ENSG00000033867|Q9Y6M7-9|SLC4A7;nc|ENSG00000033867|Q9Y6M7-6|SLC4A7;nc|ENSG00000033867|Q9Y6M7-13|SLC4A7;nc|ENSG00000033867|Q9Y6M7-12|SLC4A7;nc|ENSG00000033867|Q9Y6M7|SLC4A7;nc|ENSG00000033867|Q9Y6M7-8|SLC4A7;ENSG00000033867|ENST00000454389|SLC4A7;nc|ENSG00000033867|Q9Y6M7-5|SLC4A7;nc|ENSG00000033867|Q9Y6M7-3|SLC4A7	nc|ENSG00000033867|Q9Y6M7-4|SLC4A7	nc|ENSG00000033867|Q9Y6M7-4|SLC4A7	MULTI-MSMS	OvCa99_classI_Rep5	1	558.8436279296875	2	558.842416	1115.67028	2.0231	0.0011306	-0.72681	-0.00040617	1.2963	0.00072444	558.8421030960513	148.55	0.8329	148.55	148.28	149.11	0					38	16	3	0	0	0	0.53807	1	17386	17386		49.536	0	1	192060			48932	1077	40579	40607	52573	52573					0.1170716829947196
RLFGHRKAI	9	Unmodified	_RLFGHRKAI_					0	0	0		ENSG00000149091|ENST00000456247|DGKZ;nc|ENSG00000149091|Q13574-4|DGKZ;nc|ENSG00000149091|Q13574-5|DGKZ;nc|ENSG00000149091|Q13574-6|DGKZ	ENSG00000149091|ENST00000456247|DGKZ	ENSG00000149091|ENST00000456247|DGKZ	MULTI-SECPEP	OvCa9_classI_Rep3	3	549.8316650390625	2	549.338167	1096.66178	-0.14502	-7.9666E-05	-1.1479	-0.00063058	-1.2929	-0.00071025	549.3374872278624	71.449	1.4838	68.847	68.534	70.018	-2.6023					49	29	4	0	0	0	0.027462	1	3367	3367		24.203	1.1603	1	338670			48933	5440	40580	40608	52574	52574					0.11731659173483422
RLFGKKQMRI	10	Unmodified	_RLFGKKQMRI_					0	0	0		ENST00000483848.5_1_3:57563094-57582900:-|nuORF;ENST00000493378.1_1_3:57569737-57582900:-|nuORF;ENSG00000168374|ENST00000303436|ARF4;ENST00000489843.1_1_3:57563094-57582900:-|nuORF	ENST00000483848.5_1_3:57563094-57582900:-|nuORF	ENST00000483848.5_1_3:57563094-57582900:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	426.26104736328125	3	426.260537	1275.75978	0.20108	8.5713E-05	-0.047998	-2.046E-05	0.15308	6.5254E-05	426.2603775814104	46.759	0.87753	46.759	46.501	47.379	0					50	19	4	0	0	0	0.41036	1	3325	3325		66.962	0	1	1222300			48934	6896	40581	40609	52575	52575					0.13293099707198053
RLFHRLLRRT	10	Unmodified	_RLFHRLLRRT_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MULTI-MSMS	OvCa99_classI_Rep5	1	456.6205139160156	3	456.621345	1366.8422	0.21505	9.8195E-05	-1.2684	-0.00057918	-1.0534	-0.00048098	456.6206220423771	32.175	0.4475	32.175	32.006	32.453	0					15	8	3	0	0	0	0.70834	1	1388	1388		29.551	6.1728	1	105080			48935	9529	40582	40610	52576	52576					0.17345757830321418
RLFICAPGMP	10	Unmodified	_RLFICAPGMP_					0	0	0			REV__ENSG00000105507|ENST00000293255|CABP5	REV__ENSG00000105507|ENST00000293255|CABP5	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.8244018554688	2	552.788272	1103.56199	1.5938	0.00088102	0.53644	0.00029654	2.1302	0.0011776	552.7884950900655	87.431	0.49667	87.431	87.298	87.794	0					19	11	2	0	0	0	0.026669	1	9262	9262		47.916	0	1	484180	+		48936	17732	40583	40611	52577	52577					0.014353374530401197
RLFKDQLV	8	Unmodified	_RLFKDQLV_					0	0	0		ENSG00000100225|ENST00000266087|FBXO7;nc|ENSG00000100225|Q9Y3I1-3|FBXO7;nc|ENSG00000100225|Q9Y3I1-2|FBXO7;ENST00000492535.1_1_22:32886990-32887176:+|nuORF	ENSG00000100225|ENST00000266087|FBXO7	ENSG00000100225|ENST00000266087|FBXO7	MULTI-MSMS	OvCa9_classI_Rep3	3	509.8034362792969	2	509.805834	1017.59712	-1.3099	-0.00066782	-2.9211	-0.0014892	-4.231	-0.002157	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.7549	1	11209	11209		24.203	2.2429	1	99460			48937	2029	40584	40612	52578	52578					0.08902039576832976
RLFKRRQGRIF	11	Unmodified	_RLFKRRQGRIF_					0	0	0		nc|ENSG00000066294|Q9UIB8-4|CD84;ENST00000360056.7_1_1:160523087-160549236:-|nuORF;nc|ENSG00000066294|Q9UIB8|CD84	nc|ENSG00000066294|Q9UIB8-4|CD84	nc|ENSG00000066294|Q9UIB8-4|CD84	MSMS	OvCa9_classI_Rep3	3	492.9693603515625	3	492.972266	1475.89497	NaN	NaN	NaN	NaN	NaN	NaN	NaN	158.58	1	157.32	156.82	157.82	-1.267								0	0	0	0.19474	1	13688	13688		6.001	0.30226	1				48938	10766	40585	40613	52579	52579					0.17605715893159868
RLFLSLPV	8	Unmodified	_RLFLSLPV_					0	0	0		ENSG00000130208|ENST00000592535|APOC1	ENSG00000130208|ENST00000592535|APOC1	ENSG00000130208|ENST00000592535|APOC1	MULTI-MSMS	OvCa99_classI_Rep5	1	472.80084228515625	2	472.80002	943.585488	2.0455	0.00096711	-0.21679	-0.0001025	1.8287	0.00086461	472.7997719435708	128.83	1.6379	128.83	128.51	130.15	0					78	34	4	0	0	0	0.30448	2	14938	14917;14938		106.42	7.0402	1	2173400			48939	3968	40586	40614	52580;52581	52581					0.1114384255351979
RLFLSLPVL	9	Unmodified	_RLFLSLPVL_					0	0	0		ENSG00000130208|ENST00000592535|APOC1	ENSG00000130208|ENST00000592535|APOC1	ENSG00000130208|ENST00000592535|APOC1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.3422241210938	2	529.342052	1056.66955	1.1785	0.00062383	0.95327	0.00050461	2.1318	0.0011284	529.3423650284788	146.15	0.841	146.15	145.83	146.67	0					45	16	4	0	0	0	0.35444	1	17081	17081		56.721	10.769	1	405950			48940	3968	40587	40615	52582	52582					0.14348373650409485
RLFPKALGQLI	11	Unmodified	_RLFPKALGQLI_					0	0	0		nc|ENSG00000124155|Q969N2-6|PIGT;nc|ENSG00000124155|Q969N2-5|PIGT;ENSG00000124155|ENST00000279036|PIGT;PIGT-ZBTB8OS|1|fusion	nc|ENSG00000124155|Q969N2-6|PIGT;PIGT-ZBTB8OS|1|fusion	nc|ENSG00000124155|Q969N2-6|PIGT	MULTI-MSMS	OvCa99_classI_Rep5	1	628.4002685546875	2	628.39789	1254.78123	1.6439	0.001033	0.18388	0.00011555	1.8278	0.0011486	628.3979611466418	112.04	0.95783	112.04	111.79	112.74	0					44	20	4	0	0	0	0.068793	2	12744	12744;12767		104.06	24.606	1	2314200			48941	3628;15500	40588	40616	52583;52584	52583					0.1640280800754681
RLFPPLRQR	9	Unmodified	_RLFPPLRQR_					0	0	0		nc|ENSG00000134882|Q8NBM4-4|UBAC2;ENST00000480738.1_1_13:99967048-100037586:+|nuORF;nc|ENSG00000134882|Q8NBM4-3|UBAC2;nc|ENSG00000134882|Q8NBM4-2|UBAC2;ENSG00000134882|ENST00000403766|UBAC2	nc|ENSG00000134882|Q8NBM4-4|UBAC2	nc|ENSG00000134882|Q8NBM4-4|UBAC2	MULTI-MSMS	OvCa9_classI_Rep3	3	591.865478515625	2	591.864549	1181.71454	0.72408	0.00042856	-0.48902	-0.00028943	0.23506	0.00013913	591.8641978183085	65.182	2.2339	62.236	61.844	64.078	-2.9459					105	43	4	0	0	0	0.22961	4	2575	2575;2591;2597;2617		71.296	17.944	1	184170			48942	4342	40589	40617	52585;52586;52587;52588	52585					0.13095617236285761
RLFPPLRQR	9	Unmodified	_RLFPPLRQR_					0	0	0		nc|ENSG00000134882|Q8NBM4-4|UBAC2;ENST00000480738.1_1_13:99967048-100037586:+|nuORF;nc|ENSG00000134882|Q8NBM4-3|UBAC2;nc|ENSG00000134882|Q8NBM4-2|UBAC2;ENSG00000134882|ENST00000403766|UBAC2	nc|ENSG00000134882|Q8NBM4-4|UBAC2	nc|ENSG00000134882|Q8NBM4-4|UBAC2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	591.864549	1181.71454	0.17472	0.00010341	-0.23076	-0.00013658	-0.056042	-3.3169E-05	591.8642002748466	65.07	1.4684	62.346	61.97	63.439	-2.7246	0.054532	0.00021291	NaN	71.296	65	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184470			48943	4342	40589	40617							0.13095617236285761
RLFPVPGSGLV	11	Unmodified	_RLFPVPGSGLV_					0	0	0		ENSG00000005893|ENST00000200639|LAMP2;nc|ENSG00000005893|P13473-2|LAMP2;nc|ENSG00000005893|P13473-3|LAMP2	ENSG00000005893|ENST00000200639|LAMP2	ENSG00000005893|ENST00000200639|LAMP2	MULTI-MSMS	OvCa99_classI_Rep5	1	571.3422241210938	2	571.340041	1140.66553	1.6202	0.00092566	1.0144	0.00057954	2.6345	0.0015052	571.3405656361089	118.65	1.2162	118.65	118.25	119.47	0					82	25	4	0	0	0	0.15616	2	13602	13602;13626		85.862	32.51	1	4629400			48944	865	40590	40618	52589;52590	52589					0.10082284156692367
RLFQTEEKI	9	Unmodified	_RLFQTEEKI_					0	0	0		nc|ENSG00000197114|Q8N5A5-4|ZGPAT;nc|ENSG00000197114|Q8N5A5-3|ZGPAT;ENSG00000197114|ENST00000355969|ZGPAT;nc|ENSG00000197114|Q8N5A5|ZGPAT	nc|ENSG00000197114|Q8N5A5-4|ZGPAT	nc|ENSG00000197114|Q8N5A5-4|ZGPAT	MULTI-MSMS	OvCa99_classI_Rep5	1	582.3270263671875	2	582.324588	1162.63462	-1.3949	-0.00081228	0.53961	0.00031423	-0.85528	-0.00049805	582.3247698478046	65.786	0.90516	65.786	65.586	66.491	0					36	22	4	0	0	0	0.10421	1	6053	6053		96.034	7.8567	1	2900700			48945	8678	40591	40619	52591	52591					0.05981086051792772
RLFQWRWWRVQ	11	Unmodified	_RLFQWRWWRVQ_					0	0	0		L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|193|1|anti-sense	L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|193|1|anti-sense	L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|193|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.7869262695312	3	554.303904	1659.88988	0.094093	5.2156E-05	-3.3676	-0.0018667	-3.2735	-0.0018145	554.3021533684637	57.098	0.38855	57.098	56.833	57.221	0					13	8	2	0	0	0	0.026556	1	4765	4765		2.8518	1.4331	1	137090			48946	14783	40592	40620	52592	52592					0.08633412030530963
RLFRTNMFN	9	Unmodified	_RLFRTNMFN_					0	0	0		ENSG00000165807|ENST00000298705|PPP1R36;ENST00000556023.1_1_14:65053965-65055014:+|nuORF	ENSG00000165807|ENST00000298705|PPP1R36	ENSG00000165807|ENST00000298705|PPP1R36	MULTI-SECPEP	OvCa99_classI_Rep5	1	599.7862548828125	2	599.811125	1197.6077	1.8216	0.0010926	3.2573	0.0019537	5.0789	0.0030464	599.8123592939588	135.38	0.4679	135.38	135.08	135.55	0					16	9	2	0	0	0	0.027462	1	15765	15765		37.159	11.585	1	136300			48947	6601	40593	40621	52593	52593					0.01679698959628695
RLFSRSLGVH	10	Unmodified	_RLFSRSLGVH_					0	0	0		ENST00000426663.1_1_1:169337511-169338753:+|nuORF	ENST00000426663.1_1_1:169337511-169338753:+|nuORF	ENST00000426663.1_1_1:169337511-169338753:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	586.3675537109375	2	586.338364	1170.66217	0.16038	9.4036E-05	-1.1874	-0.00069623	-1.027	-0.00060219	586.3376711006981	92.535	0.7717	91.367	91.182	91.953	-1.168					25	14	2	0	0	0	0.026577	1	8237	8237		67.494	0	1	84750			48948	11743	40594	40622	52594	52594					0.08367034102707294
RLFTKIDTI	9	Unmodified	_RLFTKIDTI_					0	0	0		ENSG00000142627|ENST00000358432|EPHA2;nc|ENSG00000142627|P29317-2|EPHA2	ENSG00000142627|ENST00000358432|EPHA2	ENSG00000142627|ENST00000358432|EPHA2	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8302612304688	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.63422	1	14271	14271		27.882	0	1	245610			48949	4986	40595	40623	52595	52595					0.10094577919790026
RLFVGSIPK	9	Unmodified	_RLFVGSIPK_					0	0	0		nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000271793|O60506-5|SYNCRIP;nc|ENSG00000125944|O43390-4|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR;ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR	nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-MSMS	OvCa9_classI_Rep2	2	508.81500244140625	2	508.816202	1015.61785	-0.71731	-0.00036498	-1.1422	-0.00058115	-1.8595	-0.00094613	508.8155586093284	74.871	5.3666	72.9	72.481	77.848	-1.9711					298	103	5	0	0	0	0.049969	8	6141	6129;6135;6141;6147;6153;6159;6165;6177		118.74	33.384	1	7287100			48950	4365	40596	40624	52596;52597;52598;52599;52600;52601;52602;52603	52598					0.11066629956519591
RLFVGSIPK	9	Unmodified	_RLFVGSIPK_					0	0	0		nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000271793|O60506-5|SYNCRIP;nc|ENSG00000125944|O43390-4|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR;ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR	nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-MSMS	OvCa9_classI_Rep3	3	508.81683349609375	2	508.816202	1015.61785	-0.78832	-0.00040111	-1.2486	-0.00063529	-2.0369	-0.0010364	508.81565400574175	75.018	5.5984	72.607	72.192	77.79	-2.4106					316	110	5	0	0	0	0.055627	12	3821	3749;3761;3767;3773;3779;3785;3791;3797;3803;3809;3815;3821		115.49	41.239	1	9586100			48951	4365	40596	40624	52604;52605;52606;52607;52608;52609;52610;52611;52612;52613;52614;52615	52615					0.11066629956519591
RLFVGSIPK	9	Unmodified	_RLFVGSIPK_					0	0	0		nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000271793|O60506-5|SYNCRIP;nc|ENSG00000125944|O43390-4|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR;ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR	nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.81683349609375	2	508.816202	1015.61785	-0.3083	-0.00015687	-1.4848	-0.0007555	-1.7931	-0.00091236	508.81539821309786	75.996	4.7929	73.057	72.594	77.387	-2.9389					288	99	5	0	0	0	0.070405	4	6031	6007;6019;6031;6043		107.01	35.712	1	9248900			48952	4365	40596	40624	52616;52617;52618;52619	52618					0.11066629956519591
RLFVIGQH	8	Unmodified	_RLFVIGQH_					0	0	0			REV__DGKK|p.N1110Cfs*6|1|0.17|ENSG00000274588|chrX:50376111-50376112|-/ACAG|frameshift_variant	REV__DGKK|p.N1110Cfs*6|1|0.17|ENSG00000274588|chrX:50376111-50376112|-/ACAG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	485.2829895019531	2	485.285069	968.555585	-1.9489	-0.00094577	-2.4543	-0.0011911	-4.4033	-0.0021368	485.2837680529316	35.087	1.3898	32.377	32.109	33.499	-2.7097					66	27	4	0	0	0	0.73626	1	1420	1420		33.516	0	1	549360	+		48953	16291	40597	40625	52620	52620					0.07004903608174118
RLFVLFDDA	9	Unmodified	_RLFVLFDDA_					0	0	0			REV__nc|ENSG00000149761|Q9BRQ3-3|NUDT22	REV__nc|ENSG00000149761|Q9BRQ3-3|NUDT22	MULTI-MSMS	OvCa9_classI_Rep2	2	548.2952270507812	2	548.295299	1094.57605	-1.4493	-0.00079464	1.5915	0.0008726	0.14219	7.7962E-05	548.2961982412694	34.285	4.3001	31.575	31.119	35.419	-2.7097					197	86	6	0	0	0	0.55588	1	1365	1365		37.159	2.9866	1	2359300	+		48954	20176	40598	40626	52621	52621					0.032540294773070855
RLGAALAGL	9	Unmodified	_RLGAALAGL_					0	0	0			REV__ENST00000372852.3_1_1:40105296-40105449:-|nuORF	REV__ENST00000372852.3_1_1:40105296-40105449:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	421.2659912109375	2	421.266345	840.518136	-1.2006	-0.00050579	0.72037	0.00030347	-0.48026	-0.00020232	421.26666345540275	40.83	2.0659	37.876	37.421	39.487	-2.9541					132	39	5	0	0	0	0.58665	1	1820	1820		33.516	0	1	2205900	+		48955	25018	40599	40627	52622	52622					0.09149812342559471
RLGAKPKAAAS	11	Unmodified	_RLGAKPKAAAS_					0	0	0			REV__nc|ENSG00000182325|Q8N531-2|FBXL6	REV__nc|ENSG00000182325|Q8N531-2|FBXL6	MULTI-MSMS	OvCa9_classI_Rep2	2	535.3271484375	2	535.327465	1068.64038	-1.2502	-0.00066929	0.80875	0.00043294	-0.4415	-0.00023635	535.3279070397938	59.315	2.607	56.535	55.888	58.495	-2.7801					134	49	4	0	0	0	0.68021	1	4289	4289		36.447	5.9431	1	990330	+		48956	22280	40600	40628	52623	52623					0.10880229354120274
RLGALAAGL	9	Unmodified	_RLGALAAGL_					0	0	0		ENST00000372852.3_1_1:40105296-40105449:-|nuORF	ENST00000372852.3_1_1:40105296-40105449:-|nuORF	ENST00000372852.3_1_1:40105296-40105449:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	421.2669982910156	2	421.266345	840.518136	0.38381	0.00016169	-0.26705	-0.0001125	0.11676	4.9187E-05	421.2661241842314	40.583	1.4287	37.873	37.551	38.98	-2.7097					85	28	4	0	0	0	0.50066	2	2077	2062;2077		42.474	1.7665	1	557040			48957	10986	40601	40629	52624;52625	52625					0.09149812342536734
RLGAVPVILI	10	Unmodified	_RLGAVPVILI_					0	0	0			REV__tr|A0A553SHH2|A0A553SHH2_NIACITranscription-repair-couplingfactorOS=NialliacirculansOX=1397GN=mfdPE=3SV=1	REV__tr|A0A553SHH2|A0A553SHH2_NIACITranscription-repair-couplingfactorOS=NialliacirculansOX=1397GN=mfdPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	525.8574829101562	2	525.855327	1049.6961	0.93824	0.00049338	0.95799	0.00050376	1.8962	0.00099714	525.855690526433	145.75	1.1323	145.75	145.39	146.52	0					59	22	4	0	0	0	0.37918	1	17027	17027		71.296	2.5089	1	451860	+		48958	29803	40602	40630	52626	52626					0.17324062541752028
RLGDKILQV	9	Unmodified	_RLGDKILQV_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MSMS	OvCa99_classI_Rep5	1	521.325927734375	2	521.324391	1040.63423	1.0111	0.00052713	0.59501	0.00031019	1.6061	0.00083732	521.324715921044	78.903	0.65704	78.903	78.583	79.24	0					56	15	4	0	0	0	0.2077	1	8002	8002		75.043	6.2565	1	24130000			48959	1341	40603	40631	52627	52627					0.11553711122587629
RLGDLYEEEM	10	Unmodified	_RLGDLYEEEM_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-SECPEP	OvCa99_classI_Rep5	1	627.8131713867188	2	627.787178	1253.5598	2.6161	0.0016423	-2.3185	-0.0014555	0.29759	0.00018682	627.7857665391587	94.65	0.64139	94.65	94.433	95.075	0					31	14	3	0	0	0	0.026906	1	10333	10333		41.427	14.734	1	502750			48960	1049	40604	40632	52628	52628					-0.05683464541743888
RLGDVVRV	8	Unmodified	_RLGDVVRV_					0	0	0		ENST00000585735.1_1_17:40342468-40343067:-|nuORF;nc|ENSG00000167925|Q8N2G8-2|GHDC;nc|ENSG00000167925|Q8N2G8-3|GHDC;ENSG00000167925|ENST00000587427|GHDC	ENST00000585735.1_1_17:40342468-40343067:-|nuORF	ENST00000585735.1_1_17:40342468-40343067:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	457.28314208984375	2	457.282526	912.550499	-1.2465	-0.00056999	0.83275	0.0003808	-0.41373	-0.00018919	457.28274419638046	63.984	0.72871	63.984	63.732	64.461	0					37	17	4	0	0	0	0.38806	1	5796	5796		90.37	28.262	1	2156700			48961	6851	40605	40633	52629	52629					0.09072599745559273
RLGEAEGLMKV	11	Unmodified	_RLGEAEGLMKV_					0	0	0		ENSG00000157637|ENST00000374759|SLC38A10;nc|ENSG00000157637|Q9HBR0-3|SLC38A10;nc|ENSG00000157637|Q9HBR0-2|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	ENSG00000157637|ENST00000374759|SLC38A10	MULTI-MSMS	OvCa99_classI_Rep5	1	601.833251953125	2	601.831723	1201.64889	2.7919	0.0016803	-0.29254	-0.00017606	2.4994	0.0015042	601.8313779641337	75.461	0.62167	75.461	75.292	75.913	0					35	15	3	0	0	0	0.068205	1	7514	7514		104.42	34.796	1	4881400			48962	5906	40606	40634	52630	52630					0.056134152084496236
RLGGASRRV	9	Unmodified	_RLGGASRRV_					0	0	0		ENST00000542438.1_1_12:120972159-120972757:+|nuORF	ENST00000542438.1_1_12:120972159-120972757:+|nuORF	ENST00000542438.1_1_12:120972159-120972757:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	486.2966003417969	2	486.296499	970.578445	-0.68079	-0.00033107	0.46022	0.0002238	-0.22058	-0.00010727	486.2966576780202	25.338	0.30082	25.338	25.192	25.493	0					11	5	3	0	0	0	0.64427	1	559	559		26.693	0	1	49258			48963	13478	40607	40635	52631	52631					0.09197922725661556
RLGGAVGHLH	10	Unmodified	_RLGGAVGHLH_					0	0	0			REV__ENST00000216452.8_1_14:68060595-68066891:-|nuORF	REV__ENST00000216452.8_1_14:68060595-68066891:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.3345031738281	2	508.79105	1015.56755	0.45935	0.00023371	1.5646	0.00079605	2.0239	0.0010298	508.7900110698464	43.09	0.93969	40.38	40.065	41.005	-2.7097					42	18	3	0	0	0	0.026982	1	2430	2430		23.042	2.5607	1	91821	+		48964	23725	40608	40636	52632	52632					0.060385203513760644
RLGGRLALA	9	Unmodified	_RLGGRLALA_					0	0	0		nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	OvCa9_classI_Rep2	2	463.7979736328125	2	463.798343	925.582134	0.21037	9.7568E-05	-1.0086	-0.0004678	-0.79827	-0.00037024	463.7978667804196	70.561	4.2201	67.99	67.714	71.934	-2.5707					173	80	4	0	0	0	0.46377	1	5667	5667		45.952	1.8352	1	2590100			48965	8795	40609	40637	52633	52633					0.11636592499485232
RLGLAAPVRFL	11	Unmodified	_RLGLAAPVRFL_					0	0	0			REV__ENST00000461804.5_1_3:156877890-156877995:-|nuORF	REV__ENST00000461804.5_1_3:156877890-156877995:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	606.8824462890625	2	606.882407	1211.75026	1.2124	0.00073576	-0.29286	-0.00017773	0.91951	0.00055803	606.8821240150783	154.37	0.8045	154.37	154.07	154.88	0					44	15	4	0	0	0	0.69808	1	18101	18101		30.318	2.4355	1	194220	+		48966	26103	40610	40638	52634	52634					0.15285654693320794
RLGNPPLPRN	10	Unmodified	_RLGNPPLPRN_					0	0	0		ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3292846679688	2	567.330539	1132.64652	-3.474	-0.0019709	2.1482	0.0012187	-1.3258	-0.00075219	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.65434	1	12095	12095		35.618	2.8059	1	458690			48967	8129	40611	40639	52635	52635					0.08550747585650242
RLGNPPLPRN	10	Unmodified	_RLGNPPLPRN_					0	0	0		ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	ENSG00000184083|ENST00000375180|FAM120C	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.329345703125	2	567.330539	1132.64652	-0.48412	-0.00027465	-0.73588	-0.00041748	-1.22	-0.00069214	567.3299446868054	145.54	4.8872	144.11	142.68	147.57	-1.4357					247	95	4	0	0	0	0.78463	1	14356	14356		20.947	0	1	208760			48968	8129	40611	40639	52636	52636					0.08550747585650242
RLGNSLLLK	9	Unmodified	_RLGNSLLLK_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1;CPSF1-RECQL4|1|fusion	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MSMS	OvCa9_classI_Rep3	3	507.3263244628906	2	507.326934	1012.63931	0.016369	8.3042E-06	-0.049487	-2.5106E-05	-0.033118	-1.6802E-05	507.32675165090876	70.48	1.8565	67.76	67.306	69.162	-2.7196					76	36	4	0	0	0	0.055627	2	3212	3212;3219		115.49	7.4066	1	255520			48969	1457	40612	40640	52637;52638	52637					0.13350014985235248
RLGNSLLLK	9	Unmodified	_RLGNSLLLK_					0	0	0		ENSG00000071894|ENST00000616140|CPSF1;CPSF1-RECQL4|1|fusion	ENSG00000071894|ENST00000616140|CPSF1	ENSG00000071894|ENST00000616140|CPSF1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	507.326934	1012.63931	-0.11283	-5.724E-05	-0.4724	-0.00023966	-0.58522	-0.0002969	507.3266357050677	70.36	1.6437	67.79	67.361	69.005	-2.5707	0.014646	-0.00021048	NaN	115.49	61	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208490			48970	1457	40612	40640							0.13350014985235248
RLGPFMLV	8	Unmodified	_RLGPFMLV_					0	0	0			REV__ENST00000544440.6_1_13:77625173-77629724:-|nuORF	REV__ENST00000544440.6_1_13:77625173-77629724:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.7750549316406	2	466.772948	931.531344	-0.7831	-0.00036553	3.5702	0.0016665	2.7871	0.0013009	466.7745267950524	66.221	1.8163	62.731	62.418	64.235	-3.4902					91	36	4	0	0	0	0.69415	1	4798	4798		44.531	0.41427	1	1043100	+		48971	27396	40613	40641	52639	52639					0.06283927130300526
RLGQIPVKK	9	Unmodified	_RLGQIPVKK_					0	0	0		ENST00000449486.1_1_7:154738353-154739642:+|nuORF	ENST00000449486.1_1_7:154738353-154739642:+|nuORF	ENST00000449486.1_1_7:154738353-154739642:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	519.8418579101562	2	519.842751	1037.67095	-0.88384	-0.00045946	0.11636	6.0491E-05	-0.76748	-0.00039897	519.8428313366139	101.51	3.954	100.74	100.32	104.27	-0.76401					201	79	5	0	0	0	0.62352	1	9409	9409		29.15	1.2673	1	2123700			48972	12027	40614	40642	52640	52640					0.15362007739167893
RLGQLARGKG	10	Unmodified	_RLGQLARGKG_					0	0	0			REV__ENST00000300051.8_2_16:75149460-75150658:-|nuORF	REV__ENST00000300051.8_2_16:75149460-75150658:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.35546875	2	528.325257	1054.63596	1.9294	0.0010194	2.9036	0.001534	4.833	0.0025534	528.3264694093601	135.72	0.54201	134.18	133.96	134.5	-1.5437					12	10	2	0	0	0	0.026994	1	13142	13142		32.812	0	1	7387.2	+		48973	24228	40615	40643	52641	52641					0.11082764931234124
RLGQVRIAGL	10	Unmodified	_RLGQVRIAGL_					0	0	0			REV__ENST00000457354.6_1_14:51712054-51713868:+|nuORF	REV__ENST00000457354.6_1_14:51712054-51713868:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.3563232421875	2	541.843282	1081.67201	-1.1626	-0.00062992	3.1871	0.0017269	2.0246	0.001097	541.8449924650414	46.558	0.87643	43.486	43.189	44.065	-3.0724					23	16	3	0	0	0	0.027056	1	2476	2476		35.618	12.576	1	62944	+		48974	26042	40616	40644	52642	52642					0.13444222108091708
RLGRAGHLR	9	Unmodified	_RLGRAGHLR_					0	0	0			REV__nc|ENSG00000132000|Q6PEZ8-2|PODNL1	REV__nc|ENSG00000132000|Q6PEZ8-2|PODNL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.318115234375	2	518.317766	1034.62098	1.2927	0.00067005	-2.7109	-0.0014051	-1.4182	-0.00073507	518.3163014324844	138.42	1.5254	136.89	136.44	137.96	-1.5284					73	32	3	0	0	0	0.67509	1	13532	13532		23.042	0	1	110380	+		48975	19046	40617	40645	52643	52643					0.10505317853881024
RLGRGGLH	8	Unmodified	_RLGRGGLH_					0	0	0		ENST00000564629.1_1_16:31469053-31469224:-|nuORF	ENST00000564629.1_1_16:31469053-31469224:-|nuORF	ENST00000564629.1_1_16:31469053-31469224:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	433.25628662109375	2	433.259385	864.504218	-4.9467	-0.0021432	-2.6989	-0.0011693	-7.6456	-0.0033125	433.25842702722366	162.77	0.23622	162.54	162.4	162.64	-0.22696					17	4	5	0	0	0	0.75915	1	16590	16590		20.482	0	1	407620			48976	13809	40618	40646	52644	52644					0.06654579634130187
RLGRGGLH	8	Unmodified	_RLGRGGLH_					0	0	0		ENST00000564629.1_1_16:31469053-31469224:-|nuORF	ENST00000564629.1_1_16:31469053-31469224:-|nuORF	ENST00000564629.1_1_16:31469053-31469224:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	433.2555847167969	2	433.259385	864.504218	-6.3475	-0.0027501	-2.7123	-0.0011751	-9.0598	-0.0039253	433.2581836061101	163.98	0.2774	162.59	162.42	162.69	-1.3925					16	5	4	0	0	0	0.75991	1	14320	14320		21.702	0	1	874160			48977	13809	40618	40646	52645	52645					0.06654579634130187
RLGSDEQRAVL	11	Unmodified	_RLGSDEQRAVL_					0	0	0			REV__ENST00000463900.5_1_2:74756150-74756756:-|nuORF	REV__ENST00000463900.5_1_2:74756150-74756756:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	622.3377075195312	2	622.341301	1242.66805	-4.3656	-0.0027169	-3.3248	-0.0020691	-7.6904	-0.004786	622.3390875012716	154.54	0.85817	153.09	152.8	153.66	-1.4516					54	19	3	0	0	0	0.72064	1	15307	15307		22.58	2.5492	1	149970	+		48978	15688	40619	40647	52646	52646					0.05642087823707698
RLGSITPMRP	10	Unmodified	_RLGSITPMRP_					0	0	0			REV__tr|A0A7D6VW45|A0A7D6VW45_9CLOTGlutamine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=glnSPE=3SV=1;REV__tr|A0A553SGI0|A0A553SGI0_NIACIGlutamine--tRNAligaseOS=NialliacirculansOX=1397GN=glnSPE=3SV=1	REV__tr|A0A553SGI0|A0A553SGI0_NIACIGlutamine--tRNAligaseOS=NialliacirculansOX=1397GN=glnSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	564.323486328125	2	564.321325	1126.6281	3.1763	0.0017924	0.41331	0.00023324	3.5896	0.0020257	564.3213788592631	26.344	0.90757	23.635	23.418	24.326	-2.7097					50	25	3	0	0	0	0.7759	1	365	365		21.96	2.5999	1	124260	+		48979	31741;29702	40620	40648	52647	52647					0.0698486961944127
RLGSLIGLI	9	Unmodified	_RLGSLIGLI_					0	0	0		nc|ENSG00000110435|O00330-3|PDHX;ENSG00000110435|ENST00000227868|PDHX	nc|ENSG00000110435|O00330-3|PDHX	nc|ENSG00000110435|O00330-3|PDHX	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.3113098144531	2	471.310752	940.606951	1.5017	0.00070778	-1.4762	-0.00069575	0.025522	1.2029E-05	471.3098936751472	34.387	2.0483	31.599	31.003	33.051	-2.7881					80	40	3	0	0	0	0.64427	1	1029	1029		26.693	3.6504	1	114300			48980	2775	40621	40649	52648	52648					0.13427227582246815
RLGTLLPR	8	Unmodified	_RLGTLLPR_					0	0	0			REV__nc|ENSG00000173567|Q8IZF5-2|ADGRF3	REV__nc|ENSG00000173567|Q8IZF5-2|ADGRF3	MULTI-MSMS	OvCa99_classI_Rep5	1	463.3017272949219	2	463.300719	924.586885	-0.3177	-0.00014719	0.29232	0.00013543	-0.025383	-1.176E-05	463.30064544557024	67.739	0.74023	67.739	67.337	68.077	0					38	18	3	0	0	0	0.56195	1	6349	6349		71.296	9.1883	1	2018900	+		48981	21784	40622	40650	52649	52649					0.12157476642278198
RLGWRRQRRVF	11	Unmodified	_RLGWRRQRRVF_					0	0	0			REV__ENST00000359271.3_1_20:45338203-45353746:+|nuORF	REV__ENST00000359271.3_1_20:45338203-45353746:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	510.63323974609375	3	510.639398	1528.89637	-6.8567	-0.0035013	-3.4785	-0.0017762	-10.335	-0.0052775	510.63751529395284	162.45	3.2228	161.09	159.18	162.4	-1.3692					205	68	4	0	0	0	0.72511	1	14180	14180		14.086	6.6863	1	98458	+		48982	24811	40623	40651	52650	52650					0.15307349981890184
RLGWRRQRRVF	11	Unmodified	_RLGWRRQRRVF_					0	0	0			REV__ENST00000359271.3_1_20:45338203-45353746:+|nuORF	REV__ENST00000359271.3_1_20:45338203-45353746:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	510.639398	1528.89637	-5.0359	-0.0025715	-5.4655	-0.0027909	-10.501	-0.0053624	510.6364775541882	161.64	2.2729	161.41	160.13	162.4	-0.22696	0.14172	-0.0025613	NaN	14.086	92	44	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44702	+		48983	24811	40623	40651							0.15307349981890184
RLGWRRQRRVF	11	Unmodified	_RLGWRRQRRVF_					0	0	0			REV__ENST00000359271.3_1_20:45338203-45353746:+|nuORF	REV__ENST00000359271.3_1_20:45338203-45353746:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	510.639398	1528.89637	-6.6459	-0.0033936	-3.8004	-0.0019407	-10.446	-0.0053343	510.6373463872641	162.95	2.8408	161.32	159.38	162.22	-1.6336	0.045835	-1.0609E-05	NaN	14.086	162	76	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68258	+		48984	24811	40623	40651							0.15307349981890184
RLHEKIQEA	9	Unmodified	_RLHEKIQEA_					0	0	0		ENSG00000148296|ENST00000372022|SURF6	ENSG00000148296|ENST00000372022|SURF6	ENSG00000148296|ENST00000372022|SURF6	MULTI-MSMS	OvCa99_classI_Rep5	1	562.314453125	2	562.314554	1122.61456	0.58681	0.00032997	-1.1835	-0.00066551	-0.59671	-0.00033554	562.3138223423684	31.534	0.74412	31.534	31.311	32.055	0					33	14	4	0	0	0	0.10421	1	1300	1300		96.034	0	1	959240			48985	5396	40624	40652	52651	52651					0.058153351118335195
RLHETVEKR	9	Unmodified	_RLHETVEKR_					0	0	0			REV__ENSG00000197599|ENST00000389176|CCDC154	REV__ENSG00000197599|ENST00000389176|CCDC154	MULTI-MSMS	OvCa9_classI_Rep2	2	584.332763671875	2	584.333279	1166.652	-1.2681	-0.00074098	1.169	0.00068311	-0.099028	-5.7866E-05	584.3339090960189	33.507	1.6858	30.797	30.571	32.257	-2.7097					89	33	4	0	0	0	0.27001	4	1203	1203;1236;1241;1249		66.429	6.7194	1	807420	+		48986	22938	40625	40653	52652;52653;52654;52655	52652					0.07534426377446835
RLHFLKVK	8	Unmodified	_RLHFLKVK_					0	0	0			REV__ENST00000476142.1_1_3:56651192-56651654:+|nuORF	REV__ENST00000476142.1_1_3:56651192-56651654:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	520.8382568359375	2	520.840011	1039.66547	-1.3418	-0.00069886	-2.7034	-0.001408	-4.0452	-0.0021069	520.8385258959194	34.934	0.52151	34.934	34.772	35.293	0					26	10	3	0	0	0	0.66704	1	1721	1721		50.025	15.852	1	667290	+		48987	26368	40626	40654	52656	52656					0.14722328947345886
RLHFLKVK	8	Unmodified	_RLHFLKVK_					0	0	0			REV__ENST00000476142.1_1_3:56651192-56651654:+|nuORF	REV__ENST00000476142.1_1_3:56651192-56651654:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	520.840011	1039.66547	-1.3418	-0.00069886	-2.7034	-0.001408	-4.0452	-0.0021069	520.8385258959194	34.934	0.52151	34.934	34.772	35.293	0	0	0	NaN	50.025	26	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	667290	+		48988	26368	40626	40654							0.14722328947345886
RLHGELLTI	9	Unmodified	_RLHGELLTI_					0	0	0		ENST00000338086.9_1_2:20512115-20518378:-|nuORF	ENST00000338086.9_1_2:20512115-20518378:-|nuORF	ENST00000338086.9_1_2:20512115-20518378:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.3137817382812	2	526.316566	1050.61858	-2.5992	-0.001368	-1.1845	-0.00062342	-3.7837	-0.0019914	526.3157286296546	125.6	1.7421	124.19	123.62	125.36	-1.4143					100	34	4	0	0	0	0.3076	1	11934	11934		62.107	1.1355	1	243670			48989	10532	40627	40655	52657	52657					0.09529424605557324
RLHILDLDR	9	Unmodified	_RLHILDLDR_					0	0	0		ENSG00000204950|ENST00000378075|LRRC10B	ENSG00000204950|ENST00000378075|LRRC10B	ENSG00000204950|ENST00000378075|LRRC10B	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.2615966796875	2	575.838197	1149.66184	-1.6058	-0.00092466	-1.5616	-0.00089925	-3.1674	-0.0018239	575.8373228652274	43.784	0.17171	43.784	43.694	43.866	0					6	3	2	0	0	0	0.027462	1	2921	2921		20.947	6.8098	1	33627			48990	9040	40628	40656	52658	52658					0.09299614382825894
RLHLRQKHG	9	Unmodified	_RLHLRQKHG_					0	0	0		ENSG00000113916|ENST00000406870|BCL6;nc|ENSG00000113916|P41182-2|BCL6;ENSG00000161940|ENST00000293805|BCL6B	ENSG00000113916|ENST00000406870|BCL6;ENSG00000161940|ENST00000293805|BCL6B	ENSG00000113916|ENST00000406870|BCL6	MULTI-SECPEP	OvCa9_classI_Rep2	2	573.2987670898438	2	572.844148	1143.67374	-0.74005	-0.00042393	-0.45472	-0.00026048	-1.1948	-0.00068442	572.8438717754861	44.636	0.84495	41.926	41.603	42.448	-2.7097					28	16	2	0	0	0	0.027462	1	2557	2557		30.504	0	1	49191			48991	3001;6144	40629	40657	52659	52659					0.10765275916674
RLHPGTLPHC	10	Unmodified	_RLHPGTLPHC_					0	0	0		ENSG00000179832|ENST00000326134|MROH1;nc|ENSG00000179832|Q8NDA8-2|MROH1;ENST00000532255.5_1_8:145218705-145305309:+|nuORF;nc|ENSG00000179832|Q8NDA8-7|MROH1;MROH1|p.R711Gfs*26|1|0.22|ENSG00000179832|chr8:144241470-144241470|A/-|frameshift_variant;MROH1|p.A749Rfs*134|1|0.34|ENSG00000179832|chr8:144242423-144242424|-/GGCACGT|frameshift_variant;nc|ENSG00000179832|Q8NDA8-6|MROH1;nc|ENSG00000179832|Q8NDA8-5|MROH1;nc|ENSG00000179832|Q8NDA8-4|MROH1	ENSG00000179832|ENST00000326134|MROH1	ENSG00000179832|ENST00000326134|MROH1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	566.3184204101562	2	565.798017	1129.58148	1.809	0.0010235	-0.15627	-8.842E-05	1.6527	0.00093511	565.797875989122	35.334	1.099	32.485	32.19	33.288	-2.849					50	21	4	0	0	0	0.027145	1	1199	1199		24.519	6.1948	1	223240			48992	7843	40630	40658	52660	52660					0.021874297881822713
RLHRMISI	8	Unmodified	_RLHRMISI_					0	0	0		tr|A0A7D6VUF6|A0A7D6VUF6_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07185PE=4SV=1	tr|A0A7D6VUF6|A0A7D6VUF6_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07185PE=4SV=1	tr|A0A7D6VUF6|A0A7D6VUF6_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07185PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.302978515625	2	513.305478	1024.5964	-1.2723	-0.00065308	-4.158	-0.0021343	-5.4303	-0.0027874	513.3032837097945	120.22	1.4537	118.87	118.19	119.65	-1.3444					48	27	3	0	0	0	0.59148	1	11301	11301		65.803	5.6849	1	147240			48993	35183	40631	40659	52661	52661					0.08508921656152779
RLHRWLASTG	10	Unmodified	_RLHRWLASTG_					0	0	0			REV__ENSG00000132846|ENST00000255198|ZBED3	REV__ENSG00000132846|ENST00000255198|ZBED3	MULTI-MSMS	OvCa9_classI_Rep4_	4	598.838623046875	2	598.835988	1195.65742	-0.044319	-2.654E-05	3.7939	0.0022719	3.7496	0.0022454	598.8380395804049	82.48	0.8293	79.797	79.441	80.27	-2.683					45	16	3	0	0	0	0.69986	1	6836	6836		30.504	2.4222	1	765930	+		48994	19107	40632	40660	52662	52662					0.06742149959904964
RLHSVGTEP	9	Unmodified	_RLHSVGTEP_					0	0	0			REV__ENSG00000198173|ENST00000358047|FAM47C;REV__ENSG00000189132|ENST00000329357|FAM47B	REV__ENSG00000198173|ENST00000358047|FAM47C	MULTI-SECPEP	OvCa9_classI_Rep3	3	497.2961730957031	2	498.267073	994.519593	-1.022	-0.00050925	-2.6077	-0.0012993	-3.6298	-0.0018086	498.26556390578656	76.584	1.0483	74.213	73.98	75.028	-2.3715					52	19	3	0	0	0	0.027462	1	3948	3948		37.159	0	1	162560	+		48995	22995;22764	40633	40661	52663	52663					0.02211401640670374
RLHSVGTEP	9	Unmodified	_RLHSVGTEP_					0	0	0			REV__ENSG00000198173|ENST00000358047|FAM47C;REV__ENSG00000189132|ENST00000329357|FAM47B	REV__ENSG00000198173|ENST00000358047|FAM47C	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	498.267073	994.519593	-0.59644	-0.00029719	-3.9755	-0.0019809	-4.5719	-0.002278	498.26535273110306	76.96	0.24023	74.079	73.889	74.13	-2.8812	-0.066907	-0.00125	NaN	21.96	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9463.3	+		48996	22995;22764	40633	40661							0.02211401640670374
RLHTFLKLRRY	11	Unmodified	_RLHTFLKLRRY_					0	0	0			REV__nc|ENSG00000043143|Q9NQC1-3|JADE2	REV__nc|ENSG00000043143|Q9NQC1-3|JADE2	MULTI-MSMS	OvCa9_classI_Rep3	3	501.63421630859375	3	501.640405	1501.89939	-7.1499	-0.0035867	-3.6031	-0.0018075	-10.753	-0.0053942	501.9729975414474	163.96	0.2713	162.56	162.34	162.61	-1.3925					9	5	2	0	0	0	0.72575	1	14296	14296		5.6988	0.28586	1	159020	+		48997	16645	40634	40662	52664	52664					0.16851180316052705
RLHVVKLLASA	11	Unmodified	_RLHVVKLLASA_					0	0	0		ENSG00000105063|ENST00000412770|PPP6R1	ENSG00000105063|ENST00000412770|PPP6R1	ENSG00000105063|ENST00000412770|PPP6R1	MULTI-MSMS	OvCa99_classI_Rep5	1	603.8905029296875	2	603.88769	1205.76083	1.9231	0.0011613	0.17287	0.0001044	2.096	0.0012657	603.8876378357046	125.37	0.83086	125.37	125.07	125.9	0					51	20	3	0	0	0	0.71191	1	14498	14498		25.574	0	1	410480			48998	2419	40635	40663	52665	52665					0.16617637347781056
RLHYLSWTFKR	11	Unmodified	_RLHYLSWTFKR_					0	0	0			REV__ENST00000400454.5_1_21:41516612-41539212:-|nuORF	REV__ENST00000400454.5_1_21:41516612-41539212:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	502.9519348144531	3	502.949127	1505.82555	-0.17979	-9.0423E-05	3.6268	0.0018241	3.447	0.0017337	502.95094913920497	52.454	0.70274	52.454	52.17	52.873	0					46	15	4	0	0	0	0.72477	1	4104	4104		18.531	0	1	3156900	+		48999	25401	40636	40664	52666	52666					0.09287212153708424
RLIDHVKKK	9	Unmodified	_RLIDHVKKK_					0	0	0		nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	MULTI-MSMS	OvCa9_classI_Rep4_	4	568.8660278320312	2	568.866757	1135.71896	1.1883	0.00067596	-1.4628	-0.00083213	-0.27453	-0.00015617	568.8658030965368	34.346	1.4442	31.558	30.756	32.2	-2.7881					51	28	3	0	0	0	0.46356	1	1007	1007		45.972	8.1607	1	67572			49000	8799	40637	40665	52667	52667					0.1565308165920669
RLIDHVKKK	9	Unmodified	_RLIDHVKKK_					0	0	0		nc|ENSG00000198231|Q86XP3-2|DDX42;ENSG00000198231|ENST00000389924|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	nc|ENSG00000198231|Q86XP3-2|DDX42	MULTI-MATCH	OvCa9_classI_Rep2	2		2	568.866757	1135.71896	-1.9917	-0.001133	1.7533	0.00099741	-0.23836	-0.00013559	568.8676353384049	34.418	0.49622	31.708	31.563	32.059	-2.7097	0.075197	0.0031533	NaN	45.972	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11726			49001	8799	40637	40665							0.1565308165920669
RLIDLHTNV	9	Unmodified	_RLIDLHTNV_					0	0	0		ENST00000555259.5_1_14:31112578-31185169:+|nuORF;ENST00000555953.1_1_14:31142550-31144373:+|nuORF;nc|ENSG00000092108|Q8WVM8-2|SCFD1;nc|ENSG00000092108|Q8WVM8-3|SCFD1;ENSG00000092108|ENST00000458591|SCFD1	ENST00000555259.5_1_14:31112578-31185169:+|nuORF	ENST00000555259.5_1_14:31112578-31185169:+|nuORF	MSMS	OvCa99_classI_Rep5	1	540.8135375976562	2	540.811648	1079.60874	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.674	1	75.674	75.174	76.174	0								0	0	0	0.16874	1	7547	7547		54.722	5.2808	1				49002	13644	40638	40666	52668	52668					0.07212236600162214
RLIDQIHDAG	10	Unmodified	_RLIDQIHDAG_					0	0	0		tr|A0A553SRW0|A0A553SRW0_NIACIPutativeD-allulose-6-phosphate3-epimeraseOS=NialliacirculansOX=1397GN=CEQ21_01900PE=3SV=1	tr|A0A553SRW0|A0A553SRW0_NIACIPutativeD-allulose-6-phosphate3-epimeraseOS=NialliacirculansOX=1397GN=CEQ21_01900PE=3SV=1	tr|A0A553SRW0|A0A553SRW0_NIACIPutativeD-allulose-6-phosphate3-epimeraseOS=NialliacirculansOX=1397GN=CEQ21_01900PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	569.3051147460938	2	569.304187	1136.59382	-0.75978	-0.00043254	0.56409	0.00032114	-0.19568	-0.0001114	569.3044017286419	43.57	1.0154	40.562	40.326	41.341	-3.0074					51	19	3	0	0	0	0.44431	1	2103	2103		62.107	1.1355	1	493210			49003	34305	40639	40667	52669	52669					0.030987447321649597
RLIDQIHDAG	10	Unmodified	_RLIDQIHDAG_					0	0	0		tr|A0A553SRW0|A0A553SRW0_NIACIPutativeD-allulose-6-phosphate3-epimeraseOS=NialliacirculansOX=1397GN=CEQ21_01900PE=3SV=1	tr|A0A553SRW0|A0A553SRW0_NIACIPutativeD-allulose-6-phosphate3-epimeraseOS=NialliacirculansOX=1397GN=CEQ21_01900PE=3SV=1	tr|A0A553SRW0|A0A553SRW0_NIACIPutativeD-allulose-6-phosphate3-epimeraseOS=NialliacirculansOX=1397GN=CEQ21_01900PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	569.304187	1136.59382	0.084709	4.8225E-05	-0.25598	-0.00014573	-0.17127	-9.7504E-05	569.3038653293343	43.393	0.89318	40.683	40.459	41.353	-2.7097	0.060466	-0.00058701	NaN	62.107	40	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101620			49004	34305	40639	40667							0.030987447321649597
RLIEPRRF	8	Unmodified	_RLIEPRRF_					0	0	0			REV__ENST00000374140.6_1_9:116285268-116345734:+|nuORF	REV__ENST00000374140.6_1_9:116285268-116345734:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	543.83251953125	2	543.830175	1085.6458	-0.80264	-0.0004365	-2.7422	-0.0014913	-3.5448	-0.0019278	543.8284570312867	36.374	0.27682	36.374	36.211	36.487	0					10	5	2	0	0	0	0.6962	1	1914	1914		44.117	7.67	1	127990	+		49005	24415	40640	40668	52670	52670					0.10639952936594455
RLIEPRRF	8	Unmodified	_RLIEPRRF_					0	0	0			REV__ENST00000374140.6_1_9:116285268-116345734:+|nuORF	REV__ENST00000374140.6_1_9:116285268-116345734:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	543.830175	1085.6458	-0.80264	-0.0004365	-2.7422	-0.0014913	-3.5448	-0.0019278	543.8284570312867	36.374	0.27682	36.374	36.211	36.487	0	0.14318	-0.0007696	NaN	44.117	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127990	+		49006	24415	40640	40668							0.10639952936594455
RLIEPRRF	8	Unmodified	_RLIEPRRF_					0	0	0			REV__ENST00000374140.6_1_9:116285268-116345734:+|nuORF	REV__ENST00000374140.6_1_9:116285268-116345734:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	543.830175	1085.6458	-1.5194	-0.00082631	-1.296	-0.0007048	-2.8154	-0.0015311	544.3312193591624	38.87	0.54467	36.161	35.964	36.509	-2.7097	-0.069641	0.00080339	NaN	44.117	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22525	+		49007	24415	40640	40668							0.10639952936594455
RLIEPRRF	8	Unmodified	_RLIEPRRF_					0	0	0			REV__ENST00000374140.6_1_9:116285268-116345734:+|nuORF	REV__ENST00000374140.6_1_9:116285268-116345734:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	543.830175	1085.6458	-0.50611	-0.00027524	-1.4507	-0.00078895	-1.9568	-0.0010642	543.8291495665377	39.083	0.64613	36.157	35.948	36.594	-2.9264	-0.073543	0.00063509	NaN	44.117	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66006	+		49008	24415	40640	40668							0.10639952936594455
RLIFGGQDGA	10	Unmodified	_RLIFGGQDGA_					0	0	0		tr|A0A553SII7|A0A553SII7_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14885PE=3SV=1	tr|A0A553SII7|A0A553SII7_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14885PE=3SV=1	tr|A0A553SII7|A0A553SII7_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14885PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.8005981445312	2	517.274898	1032.53524	-1.2236	-0.00063296	1.4231	0.00073613	0.19944	0.00010317	517.2754553715739	42.123	1.3939	39.142	38.801	40.195	-2.9804					53	26	3	0	0	0	0.026867	1	1973	1973		42.864	16.171	1	314850			49009	33384	40641	40669	52671	52671					0.020276881577274253
RLIFGGQDGA	10	Unmodified	_RLIFGGQDGA_					0	0	0		tr|A0A553SII7|A0A553SII7_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14885PE=3SV=1	tr|A0A553SII7|A0A553SII7_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14885PE=3SV=1	tr|A0A553SII7|A0A553SII7_NIACISugarABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14885PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	517.274898	1032.53524	1.1969	0.00061914	-1.3216	-0.00068365	-0.1247	-6.4506E-05	517.2740501160058	41.868	0.98635	39.159	38.931	39.917	-2.7097	0.0082415	-0.0016071	NaN	42.864	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57586			49010	33384	40641	40669							0.020276881577274253
RLIFVRHMG	9	Unmodified	_RLIFVRHMG_					0	0	0		ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	ENSG00000085377|ENST00000652536|PREP	MSMS	OvCa99_classI_Rep5	1	564.8276977539062	2	564.826578	1127.6386	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.842	1	30.842	30.342	31.342	0								0	0	0	0.17192	1	1219	1219		45.952	1.5748	1				49011	1726	40642	40670	52672	52672					0.07988897064524281
RLIGEAKKLD	10	Unmodified	_RLIGEAKKLD_					0	0	0		tr|A0A553SQZ5|A0A553SQZ5_NIACIROKfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00015PE=4SV=1	tr|A0A553SQZ5|A0A553SQZ5_NIACIROKfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00015PE=4SV=1	tr|A0A553SQZ5|A0A553SQZ5_NIACIROKfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00015PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	571.8477172851562	2	571.84823	1141.68191	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.763	1	37.763	37.263	38.263	0								0	0	0	0.1449	1	2094	2094		36.447	0.82846	1				49012	34211	40643	40671	52673	52673					0.11673365322781137
RLIGKKLI	8	Unmodified	_RLIGKKLI_					0	0	0		tr|A0A7D6VQ29|A0A7D6VQ29_9CLOTRibosomalL7Ae/L30e/S12e/Gadd45familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21325PE=4SV=1	tr|A0A7D6VQ29|A0A7D6VQ29_9CLOTRibosomalL7Ae/L30e/S12e/Gadd45familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21325PE=4SV=1	tr|A0A7D6VQ29|A0A7D6VQ29_9CLOTRibosomalL7Ae/L30e/S12e/Gadd45familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21325PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.25390625	2	470.836937	939.659321	0.41574	0.00019575	-0.026255	-1.2362E-05	0.38949	0.00018339	470.83671810871095	45.263	0.55962	45.263	45.023	45.582	0					27	12	3	0	0	0	0.028476	1	3144	3144		35.201	3.2459	1	246090			49013	34817	40644	40672	52674	52674					0.18707810715829964
RLIGNVDIEF	10	Unmodified	_RLIGNVDIEF_					0	0	0			REV__ENSG00000044574|ENST00000324460|HSPA5	REV__ENSG00000044574|ENST00000324460|HSPA5	MULTI-SECPEP	OvCa9_classI_Rep2	2	588.2973022460938	2	588.324588	1174.63462	0.25553	0.00015033	-1.6313	-0.00095975	-1.3758	-0.00080942	588.3234724319937	86.953	0.97819	85.522	84.962	85.94	-1.4311					26	18	2	0	0	0	0.026681	1	7529	7529		36.447	0	1	38424	+		49014	16650	40645	40673	52675	52675					0.05429086051799459
RLIGQIVSSI	10	Unmodified	_RLIGQIVSSI_					0	0	0		ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000167552|Q71U36-2|TUBA1A;nc|ENSG00000198033|P0DPH7-2|TUBA3C;ENSG00000198033|ENST00000400113|TUBA3C;ENSG00000152086|ENST00000312988|TUBA3E;ENSG00000075886|ENST00000321253|TUBA3D;TUBA1A|p.R264Pfs*25|1|0.06|ENSG00000167552|chr12:49185575-49185575|C/-|frameshift_variant	ENSG00000167552|ENST00000301071|TUBA1A	ENSG00000167552|ENST00000301071|TUBA1A	MULTI-MSMS	OvCa99_classI_Rep5	1	543.3388061523438	2	543.337498	1084.66044	1.6819	0.00091386	-0.56393	-0.00030641	1.118	0.00060745	543.3372513180364	106.86	1.7458	106.86	106.54	108.28	0					122	40	5	0	0	0	0.048965	2	12017	12017;12040		129.42	44.26	1	33985000			49015	6805	40646	40674	52676;52677	52676					0.12149980294066154
RLIGRKFND	9	Unmodified	_RLIGRKFND_					0	0	0		ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000204390|ENST00000375654|HSPA1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.7669067382812	2	559.825089	1117.63563	0.69093	0.0003868	0.73274	0.00041021	1.4237	0.000797	559.8250539450597	62.95	0.2838	62.95	62.816	63.1	0					9	6	2	0	0	0	0.027462	1	5629	5629		6.3127	0	1	334330			49016	8979	40647	40675	52678	52678					0.08151345211376793
RLIILDLIL	9	Unmodified	_RLIILDLIL_					0	0	0		ENST00000531801.5_1_11:82571134-82612695:-|nuORF	ENST00000531801.5_1_11:82571134-82612695:-|nuORF	ENST00000531801.5_1_11:82571134-82612695:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.3455200195312	2	541.37081	1080.72707	-0.21038	-0.00011389	-1.0488	-0.0005678	-1.2592	-0.00068169	541.3702437518136	81.39	0.25422	79.742	79.614	79.869	-1.6485					6	4	2	0	0	0	0.027462	1	6909	6909		25.45	13.939	1	15223			49017	13313	40648	40676	52679	52679					0.18993215855994094
RLIKERGLDA	10	Unmodified	_RLIKERGLDA_					0	0	0			REV__nc|ENSG00000083223|Q5VYS8-6|TUT7	REV__nc|ENSG00000083223|Q5VYS8-6|TUT7	MULTI-MSMS	OvCa99_classI_Rep5	1	585.8516845703125	2	585.851304	1169.68806	-1.0797	-0.00063254	0.56701	0.00033219	-0.51268	-0.00030035	585.8515800579427	37.092	0.73538	37.092	36.84	37.576	0					22	15	2	0	0	0	0.5635	1	2004	2004		46.457	3.5925	1	530880	+		49018	17098	40649	40677	52680	52680					0.1099988355433652
RLIKKKKSVF	10	Unmodified	_RLIKKKKSVF_					0	0	0			REV__tr|A0A7D6ZU92|A0A7D6ZU92_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23235PE=4SV=1	REV__tr|A0A7D6ZU92|A0A7D6ZU92_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23235PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	623.9183959960938	2	623.921532	1245.82851	-5.6275	-0.0035111	-0.80944	-0.00050503	-6.4369	-0.0040161	623.9209249558969	163.4	0.91801	163.18	162.75	163.67	-0.22696					66	30	3	0	0	0	0.94667	1	16623	16623		3.41	0.25078	1	62419	+		49019	32216	40650	40678	52681	52681					0.21543087278541861
RLIKKLEQ	8	Unmodified	_RLIKKLEQ_					0	0	0			REV__tr|A0A7D6VSK1|A0A7D6VSK1_9CLOTRecombinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13210PE=4SV=1	REV__tr|A0A7D6VSK1|A0A7D6VSK1_9CLOTRecombinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13210PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	514.7681274414062	2	514.334759	1026.65496	3.8189	0.0019642	-4.3999	-0.002263	-0.58097	-0.00029881	514.3324248151647	25.113	0.38863	22.404	22.29	22.679	-2.7097					12	7	2	0	0	0	0.028476	1	240	240		31.955	0	1	23454	+		49020	31512	40651	40679	52682	52682					0.14270301502256189
RLIKPKPRT	9	Unmodified	_RLIKPKPRT_					0	0	0			REV__nc|ENSG00000133619|A5PL33-3|KRBA1	REV__nc|ENSG00000133619|A5PL33-3|KRBA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.8685302734375	2	554.8693	1107.72405	1.2589	0.0006985	-1.5027	-0.00083378	-0.24381	-0.00013528	554.8683554320133	36.062	1.2954	33.213	32.99	34.285	-2.849					70	25	4	0	0	0	0.44568	1	1213	1213		47.657	1.6851	1	499100	+		49021	19150	40652	40680	52683	52683					0.17449385521831573
RLIKPNVNYR	10	Unmodified	_RLIKPNVNYR_					0	0	0			REV__nc|ENSG00000177947|Q96PU9-2|CIMAP1A	REV__nc|ENSG00000177947|Q96PU9-2|CIMAP1A	MULTI-SECPEP	OvCa9_classI_Rep2	2	424.9103088378906	3	424.922689	1271.74624	0.90972	0.00038656	-1.5995	-0.00067968	-0.68983	-0.00029312	424.92236006035876	65.348	0.502	62.627	62.495	62.997	-2.7205					13	9	2	0	0	0	0.026573	1	5052	5052		80.455	42.946	1	10405	+		49022	22033	40653	40681	52684	52684					0.12123565199590303
RLILGQLRA	9	Unmodified	_RLILGQLRA_					0	0	0			REV__ENST00000565092.6_1_16:1496634-1499128:-|nuORF	REV__ENST00000565092.6_1_16:1496634-1499128:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.3396606445312	2	520.340375	1038.6662	-0.78006	-0.0004059	0.73752	0.00038376	-0.042543	-2.2137E-05	520.3404101251207	39.944	1.9528	36.99	36.616	38.569	-2.9541					93	37	5	0	0	0	0.67509	1	1732	1732		23.042	1.0826	1	1048100	+		49023	27676	40654	40682	52685	52685					0.14841123596397665
RLINQVLEL	9	Unmodified	_RLINQVLEL_					0	0	0		ENSG00000153130|ENST00000608372|SCOC;nc|ENSG00000153130|Q9UIL1-3|SCOC;nc|ENSG00000153130|Q9UIL1-2|SCOC;nc|ENSG00000153130|Q9UIL1|SCOC	ENSG00000153130|ENST00000608372|SCOC	ENSG00000153130|ENST00000608372|SCOC	MULTI-MSMS	OvCa99_classI_Rep5	1	549.3389892578125	2	549.337498	1096.66044	1.9547	0.0010738	-0.052567	-2.8877E-05	1.9022	0.0010449	549.3373313202926	112.95	0.63541	112.95	112.7	113.33	0					38	13	4	0	0	0	0.16562	1	12881	12881		82.241	18.033	1	1761200			49024	5662	40655	40683	52686	52686					0.1159798029407284
RLIPPLQL	8	Unmodified	_RLIPPLQL_					0	0	0			REV__tr|A0A553SUP3|A0A553SUP3_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_03785PE=4SV=1	REV__tr|A0A553SUP3|A0A553SUP3_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_03785PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	475.3131103515625	2	475.313295	948.612037	0.3649	0.00017344	-0.66101	-0.00031419	-0.29611	-0.00014075	475.31289417376075	113.27	2.1231	113.15	112.82	114.94	-0.12174					75	42	4	0	0	0	0.57878	5	10762	10743;10755;10762;10774;10780		68.485	0	1	307110	+		49025	31104	40656	40684	52687;52688;52689;52690;52691	52689					0.1356753144484628
RLIPPLQL	8	Unmodified	_RLIPPLQL_					0	0	0			REV__tr|A0A553SUP3|A0A553SUP3_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_03785PE=4SV=1	REV__tr|A0A553SUP3|A0A553SUP3_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_03785PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	475.3126525878906	2	475.313295	948.612037	0.97281	0.00046239	-1.2874	-0.00061192	-0.31459	-0.00014953	475.3125683333553	114.33	2.0434	113.27	112.84	114.88	-1.055					93	40	4	0	0	0	0.62934	2	8460	8423;8460		57.811	0	1	307310	+		49026	31104	40656	40684	52692;52693	52693					0.1356753144484628
RLIPPLQL	8	Unmodified	_RLIPPLQL_					0	0	0			REV__tr|A0A553SUP3|A0A553SUP3_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_03785PE=4SV=1	REV__tr|A0A553SUP3|A0A553SUP3_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_03785PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.31298828125	2	475.313295	948.612037	1.0224	0.00048597	-1.4538	-0.00069099	-0.43134	-0.00020502	475.3124814237158	114.68	1.7771	113.28	112.89	114.66	-1.3977					72	34	4	0	0	0	0.37872	2	10664	10643;10664		92.191	17.674	1	373550	+		49027	31104	40656	40684	52694;52695	52695					0.1356753144484628
RLIPTLVSI	9	Unmodified	_RLIPTLVSI_					0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-MSMS	OvCa99_classI_Rep5	1	506.3330078125	2	506.331685	1010.64882	2.439	0.0012349	-0.20398	-0.00010328	2.235	0.0011316	506.3314234730125	121.64	0.8819	121.64	121.38	122.27	0					40	18	4	0	0	0	0.38969	1	13990	13990		52.937	0	1	615670			49028	8850	40657	40685	52696	52696					0.14391783270752967
RLIPTLVSI	9	Unmodified	_RLIPTLVSI_					0	0	0		ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	ENSG00000198700|ENST00000361565|IPO9	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.3316650390625	2	506.331685	1010.64882	-1.2295	-0.00062251	1.1578	0.00058623	-0.071662	-3.6285E-05	506.3321412541863	124.25	1.9396	122.86	122.47	124.41	-1.3908					58	35	3	0	0	0	0.60342	1	11782	11782		31.53	2.3803	1	86226			49029	8850	40657	40685	52697	52697					0.14391783270752967
RLIRDIDT	8	Unmodified	_RLIRDIDT_					0	0	0			REV__nc|ENSG00000215695|Q92681|RSC1A1	REV__nc|ENSG00000215695|Q92681|RSC1A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.29010009765625	2	501.290548	1000.56654	1.9923	0.0009987	-2.262	-0.0011339	-0.26972	-0.00013521	501.28921225940996	136.36	2.694	134.82	133.46	136.15	-1.5437					126	54	3	0	0	0	0.75241	1	13137	13137		25.45	0	1	86011	+		49030	29134	40658	40686	52698	52698					0.06628261191792717
RLIRDLHQHL	10	Unmodified	_RLIRDLHQHL_					0	0	0		ENST00000579762.1_1_17:26684693-26685353:+|nuORF;ENST00000581386.5_1_17:26684693-26686548:+|nuORF;ENST00000483505.6_1_17:26684735-26687632:+|nuORF;ENSG00000244045|ENST00000292114|TMEM199	ENST00000579762.1_1_17:26684693-26685353:+|nuORF	ENST00000579762.1_1_17:26684693-26685353:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	434.25897216796875	3	434.258072	1299.75239	-0.23626	-0.0001026	0.037814	1.6421E-05	-0.19845	-8.6179E-05	434.25794982643123	50.279	0.69903	50.279	50.031	50.73	0					31	15	3	0	0	0	0.64812	1	3811	3811		36.318	6.7669	1	641250			49031	9391	40659	40687	52699	52699					0.11450083431122948
RLIRIIIV	8	Unmodified	_RLIRIIIV_					0	0	0			REV__ENSG00000056097|ENST00000265069|ZFR	REV__ENSG00000056097|ENST00000265069|ZFR	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.3341979980469	2	498.358037	994.701521	-0.82113	-0.00040922	3.6051	0.0017966	2.784	0.0013874	498.35926520802434	124.13	0.24747	122.74	122.57	122.82	-1.3908					6	4	2	0	0	0	0.028476	1	11760	11760		25.45	6.0902	1	21215	+		49032	16715	40660	40688	52700	52700					0.20395786124231563
RLIRKALEF	9	Unmodified	_RLIRKALEF_					0	0	0		ENSG00000118492|ENST00000397944|ADGB;nc|ENSG00000118492|Q8N7X0-2|ADGB	ENSG00000118492|ENST00000397944|ADGB	ENSG00000118492|ENST00000397944|ADGB	MULTI-MSMS	OvCa99_classI_Rep5	1	573.3604125976562	2	573.361308	1144.70806	1.383	0.00079296	0.70989	0.00040702	2.0929	0.0012	573.361535376128	83.628	1.2145	83.628	83.335	84.55	0					63	28	4	0	0	0	0.46356	1	8695	8695		45.972	6.7194	1	2579000			49033	3309	40661	40689	52701	52701					0.14149679284946615
RLIRLPSF	8	Unmodified	_RLIRLPSF_					0	0	0			REV__ENSG00000091138|ENST00000340010|SLC26A3	REV__ENSG00000091138|ENST00000340010|SLC26A3	MULTI-MSMS	OvCa99_classI_Rep5	1	501.314697265625	2	501.316369	1000.61818	-0.97849	-0.00049053	-4.1256	-0.0020682	-5.1041	-0.0025588	501.3142725148259	27.018	0.44925	27.018	26.892	27.341	0					14	8	2	0	0	0	0.67745	1	764	764		47.916	0	1	80928	+		49034	17244	40662	40690	52702	52702					0.11790049676369563
RLIRNNGL	8	Unmodified	_RLIRNNGL_					0	0	0			REV__ENST00000607997.1_1_9:4679016-4679417:-|nuORF	REV__ENST00000607997.1_1_9:4679016-4679417:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	478.2913513183594	2	478.293425	954.572297	1.9069	0.00091204	-1.2076	-0.00057756	0.69932	0.00033448	478.29162556845864	63.964	0.99544	60.971	60.701	61.696	-2.9933					35	19	4	0	0	0	0.7043	1	2443	2443		42.474	8.9589	1	83815	+		49035	28094	40663	40691	52703	52703					0.09319404494124228
RLISQIVSSI	10	Unmodified	_RLISQIVSSI_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000123416|P68363-2|TUBA1B;ENSG00000183785|ENST00000330423|TUBA8;nc|ENSG00000183785|Q9NY65-2|TUBA8;ENSG00000243910|ENST00000490341|TUBA4B;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000123416|ENST00000336023|TUBA1B	MULTI-MSMS	OvCa99_classI_Rep5	1	558.3436889648438	2	558.342781	1114.67101	2.0488	0.0011439	-0.76811	-0.00042887	1.2807	0.00071507	558.3423686303381	111.05	2.7087	111.05	110.67	113.38	0					157	59	5	0	0	0	0.1266	1	12628	12628		106.88	10.847	1	14357000			49036	3593;6806	40664	40692	52704	52704					0.11825962948501001
RLKAKEFSL	9	Unmodified	_RLKAKEFSL_					0	0	0		ENSG00000167157|ENST00000372469|PRRX2	ENSG00000167157|ENST00000372469|PRRX2	ENSG00000167157|ENST00000372469|PRRX2	MULTI-MSMS	OvCa99_classI_Rep5	1	546.3350219726562	2	546.332216	1090.64988	-0.46342	-0.00025318	0.0021798	1.1909E-06	-0.46124	-0.00025199	546.3321112251145	54.15	0.65629	54.15	53.891	54.547	0					36	15	3	0	0	0	0.28934	1	4356	4356		64.207	4.089	1	1200000			49037	6762	40665	40693	52705	52705					0.10817997639651367
RLKAKEYSL	9	Unmodified	_RLKAKEYSL_					0	0	0		ENST00000367760.7_1_1:170699481-170705324:+|nuORF;ENSG00000116132|ENST00000239461|PRRX1	ENST00000367760.7_1_1:170699481-170705324:+|nuORF	ENST00000367760.7_1_1:170699481-170705324:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	554.329833984375	2	554.329673	1106.64479	-0.4411	-0.00024451	0.015225	8.4395E-06	-0.42587	-0.00023607	554.3296601301724	41.483	1.0024	41.483	41.24	42.242	0					65	22	4	0	0	0	0.10502	2	2609	2584;2609		95.815	16.103	1	5419700			49038	3156	40666	40694	52706;52707	52707					0.09573693777042536
RLKAPGVIT	9	Unmodified	_RLKAPGVIT_					0	0	0		ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	ENSG00000146233|ENST00000275016|CYP39A1	MULTI-MSMS	OvCa9_classI_Rep3	3	477.8077697753906	2	477.808377	953.6022	1.9488	0.00093115	-1.9172	-0.00091603	0.031633	1.5115E-05	477.8073051342162	64.159	1.1625	61.166	60.836	61.999	-2.9933					49	22	3	0	0	0	0.67509	1	2486	2486		23.042	0	1	160040			49039	5275	40667	40695	52708	52708					0.12354343439449167
RLKDKEGKHR	10	Unmodified	_RLKDKEGKHR_					0	0	0			REV__ENST00000555520.1_1_15:93431416-93440966:+|nuORF	REV__ENST00000555520.1_1_15:93431416-93440966:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	422.91973876953125	3	422.917827	1265.73165	-0.036263	-1.5336E-05	2.926	0.0012375	2.8898	0.0012221	422.9190110204645	75.916	2.7671	73.545	72.861	75.628	-2.3715					169	53	5	0	0	0	0.65826	1	3873	3873		35.178	3.1441	1	908720	+		49040	27544	40668	40696	52709	52709					0.1094149305145038
RLKDLEALL	9	Unmodified	_RLKDLEALL_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA;nc|ENSG00000160789|P02545-5|LMNA;nc|ENSG00000160789|P02545-4|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	OvCa99_classI_Rep5	1	535.8336181640625	2	535.832049	1069.64954	3.0086	0.0016121	-1.243	-0.00066603	1.7656	0.00094607	535.8313518112644	102.42	1.148	102.42	101.87	103.01	0					96	26	5	0	0	0	0.035142	2	11410	11410;11440		131.03	43.277	1	30847000			49041	6091	40669	40697	52710;52711	52710					0.11750577919792704
RLKEAYSV	8	Unmodified	_RLKEAYSV_					0	0	0		PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant;PRPF8|p.Q2065Hfs*8|1|0.04|ENSG00000174231|chr17:1653809-1653810|-/G|frameshift_variant;ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.Q1835Afs*4|1|0.07|ENSG00000174231|chr17:1658255-1658256|-/C|frameshift_variant;PRPF8|p.F1684Dfs*30|1|0.07|ENSG00000174231|chr17:1659445-1659446|-/AAGTCAGGAGATCGAGACCATC|frameshift_variant	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	483.2742614746094	2	483.274367	964.53418	-0.72078	-0.00034833	-0.10701	-5.1716E-05	-0.82779	-0.00040005	483.2742620513752	44.372	2.1157	44.372	44.038	46.154	0					98	47	4	0	0	0	0.35821	2	2980	2980;3004		96.19	22.216	1	13406000			49042	7449	40670	40698	52712;52713	52712					0.05049473788801606
RLKEAYSVK	9	Unmodified	_RLKEAYSVK_					0	0	0		PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant;PRPF8|p.Q2065Hfs*8|1|0.04|ENSG00000174231|chr17:1653809-1653810|-/G|frameshift_variant;ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.Q1835Afs*4|1|0.07|ENSG00000174231|chr17:1658255-1658256|-/C|frameshift_variant;PRPF8|p.F1684Dfs*30|1|0.07|ENSG00000174231|chr17:1659445-1659446|-/AAGTCAGGAGATCGAGACCATC|frameshift_variant	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.3228759765625	2	547.321848	1092.62914	-0.45105	-0.00024687	0.17559	9.6107E-05	-0.27545	-0.00015076	547.3215483438972	39.314	1.5136	36.387	36.146	37.66	-2.9264					45	29	2	0	0	0	0.2422	1	1606	1606		69.628	5.4204	1	228320			49043	7449	40671	40699	52714	52714					0.0865340725997612
RLKEEKPLL	9	Unmodified	_RLKEEKPLL_					0	0	0			REV__ENSG00000167434|ENST00000300900|CA4	REV__ENSG00000167434|ENST00000300900|CA4	MULTI-MSMS	OvCa9_classI_Rep3	3	563.3524780273438	2	563.353148	1124.69174	-1.0854	-0.00061147	0.27756	0.00015637	-0.80785	-0.00045511	563.3535121729102	117.2	1.8826	116.17	115.84	117.73	-1.0324					63	37	2	0	0	0	0.40667	1	8851	8851		51.335	1.7994	1	2467900	+		49044	21277	40672	40700	52715	52715					0.13438553328182934
RLKEHIKML	9	Unmodified	_RLKEHIKML_					0	0	0			REV__ENSG00000161647|ENST00000398389|MPP3	REV__ENSG00000161647|ENST00000398389|MPP3	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3568725585938	2	584.355168	1166.69578	-0.5033	-0.0002941	2.9292	0.0017117	2.4259	0.0014176	584.3567763295431	142.42	4.015	140.98	138.81	142.83	-1.4427					242	77	4	0	0	0	0.6959	1	13932	13932		19.36	4.4951	1	214670	+		49045	20701	40673	40701	52716	52716					0.1191031955024755
RLKEIEERL	9	Unmodified	_RLKEIEERL_					0	0	0		ENST00000555400.1_1_14:53521153-53527951:-|nuORF;nc|ENSG00000100523|Q8NEL9-3|DDHD1;nc|ENSG00000100523|Q8NEL9-2|DDHD1;nc|ENSG00000100523|Q8NEL9-4|DDHD1;ENSG00000100523|ENST00000673822|DDHD1	ENST00000555400.1_1_14:53521153-53527951:-|nuORF	ENST00000555400.1_1_14:53521153-53527951:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	593.3524169921875	2	593.351137	1184.68772	-0.36923	-0.00021908	0.16838	9.9911E-05	-0.20084	-0.00011917	593.3511712245379	54.78	0.93681	54.78	54.464	55.401	0					46	19	4	0	0	0	0.012992	1	4441	4441		159.28	0	1	2873500			49046	2081	40674	40702	52717	52717					0.10276463834452443
RLKELEEQV	9	Unmodified	_RLKELEEQV_					0	0	0		ENST00000354485.5_1_9:676972-730286:+|nuORF;ENST00000489369.5_1_9:676972-732786:+|nuORF;nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1	ENST00000354485.5_1_9:676972-730286:+|nuORF	ENST00000354485.5_1_9:676972-730286:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	572.3214111328125	2	572.322045	1142.62954	0.067843	3.8828E-05	0.24298	0.00013906	0.31082	0.00017789	572.3221012134787	57.592	0.67335	57.592	57.353	58.027	0					34	15	3	0	0	0	0.07097	1	4842	4842		106.68	2.6263	1	1792800			49047	2586	40675	40703	52718	52718					0.06392782189163881
RLKELESQV	9	Unmodified	_RLKELESQV_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	551.3182373046875	2	551.316763	1100.61897	-0.56257	-0.00031016	-0.39729	-0.00021904	-0.95987	-0.00052919	551.3165723110063	53.108	2.3201	53.108	52.873	55.193	0					149	54	5	0	0	0	0.1243	3	4210	4210;4266;4292		90.601	10.888	1	48498000			49048	3744	40676	40704	52719;52720;52721	52719					0.07268799534745085
RLKGALTVY	9	Unmodified	_RLKGALTVY_					0	0	0		tr|A0A553SG41|A0A553SG41_NIACIGlutamate-1-semialdehyde2,1-aminomutaseOS=NialliacirculansOX=1397GN=hemLPE=3SV=1	tr|A0A553SG41|A0A553SG41_NIACIGlutamate-1-semialdehyde2,1-aminomutaseOS=NialliacirculansOX=1397GN=hemLPE=3SV=1	tr|A0A553SG41|A0A553SG41_NIACIGlutamate-1-semialdehyde2,1-aminomutaseOS=NialliacirculansOX=1397GN=hemLPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.8130187988281	2	510.813659	1019.61277	0.11505	5.8767E-05	-0.34722	-0.00017736	-0.23217	-0.0001186	510.81331393862774	122.49	1.1397	121.12	120.86	122	-1.3666					44	22	3	0	0	0	0.59983	1	11566	11566		31.955	1.4512	1	84302			49049	33115	40677	40705	52722	52722					0.10374326093892705
RLKGAQTGRN	10	Unmodified	_RLKGAQTGRN_					0	0	0		ENST00000557244.1_1_14:67819633-67826415:-|nuORF;ENST00000555335.1_1_14:67815736-67826415:-|nuORF;ENSG00000100554|ENST00000216442|ATP6V1D	ENST00000557244.1_1_14:67819633-67826415:-|nuORF	ENST00000557244.1_1_14:67819633-67826415:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	550.8175659179688	2	550.817796	1099.62104	-0.40024	-0.00022046	-0.012116	-6.6736E-06	-0.41235	-0.00022713	550.8178523914296	23.016	0.98193	23.016	22.854	23.836	0					54	19	5	0	0	0	0.44431	1	274	274		62.107	0	1	3720400			49050	2082	40678	40706	52723	52723					0.07521273063230183
RLKGKEGRV	9	Unmodified	_RLKGKEGRV_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A;nc|ENSG00000181222|P24928-2|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	OvCa99_classI_Rep5	1	521.82763671875	2	521.827632	1041.64071	-0.81118	-0.0004233	0.62242	0.0003248	-0.18875	-9.8497E-05	521.827857240324	23.672	0.33921	23.672	23.497	23.836	0					13	6	3	0	0	0	0.40818	1	361	361		51.193	8.7966	1	91445			49051	7923	40679	40707	52724	52724					0.12155649073974928
RLKHLKAFE	9	Unmodified	_RLKHLKAFE_					0	0	0		ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	ENSG00000085840|ENST00000371568|ORC1	MULTI-MSMS	OvCa99_classI_Rep5	1	571.3439331054688	2	571.345658	1140.67676	-0.53031	-0.00030299	-4.0216	-0.0022977	-4.5519	-0.0026007	571.3434119951654	35.962	1.1333	35.962	35.707	36.84	0					71	24	5	0	0	0	0.37135	1	1890	1890		54.776	7.119	1	11647000			49052	1742	40680	40708	52725	52725					0.11205106250849894
RLKIRIGWI	9	Unmodified	_RLKIRIGWI_					0	0	0		PHKB|p.M871R|1|0.04|ENSG00000102893|chr16:47669399-47669399|T/G|missense_variant	PHKB|p.M871R|1|0.04|ENSG00000102893|chr16:47669399-47669399|T/G|missense_variant	PHKB|p.M871R|1|0.04|ENSG00000102893|chr16:47669399-47669399|T/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.3082885742188	2	577.879668	1153.74478	-0.4881	-0.00028206	0.2913	0.00016834	-0.19679	-0.00011372	577.8796555854667	47.268	0.56674	47.268	46.985	47.551	0					29	12	3	0	0	0	0.027462	1	3419	3419		30.504	0	1	251060			49053	15495	40681	40709	52726	52726					0.1740597590148809
RLKKAIPH	8	Unmodified	_RLKKAIPH_					0	0	0		tr|A0A7D6W0P1|A0A7D6W0P1_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00240PE=4SV=1	tr|A0A7D6W0P1|A0A7D6W0P1_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00240PE=4SV=1	tr|A0A7D6W0P1|A0A7D6W0P1_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00240PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	481.8137512207031	2	481.816536	961.618519	0.63652	0.00030669	-4.3932	-0.0021167	-3.7567	-0.0018101	481.81479588639235	160.92	2.1046	160.92	159.66	161.77	0					71	41	3	0	0	0	0.75991	1	18949	18949		21.702	2.3424	1	146960			49054	35382	40682	40710	52727	52727					0.1361746939621753
RLKKANLQI	9	Unmodified	_RLKKANLQI_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.A1773Sfs*19|1|0.04|ENSG00000100345|chr22:36285287-36285288|-/T|frameshift_variant;CHD2-MYH9|1|fusion;nc|ENSG00000100345|P35579-2|MYH9;ENST00000475726.5_1_22:36680347-36682008:-|nuORF;ENST00000486218.1_1_22:36680427-36682008:-|nuORF	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OvCa99_classI_Rep5	1	542.3541259765625	2	542.353483	1082.69241	-0.28541	-0.00015479	-0.015735	-8.5337E-06	-0.30115	-0.00016333	542.353443122758	43.207	1.1532	43.207	42.97	44.123	0					75	26	5	0	0	0	0.50149	1	2856	2856		42.396	0	1	4515100			49055	2050	40683	40711	52728	52728					0.1543739276787619
RLKKFAVAE	9	Unmodified	_RLKKFAVAE_					0	0	0		nc|ENSG00000005175|Q9H6T3-3|RPAP3;nc|ENSG00000005175|Q9H6T3-2|RPAP3;ENSG00000005175|ENST00000005386|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	nc|ENSG00000005175|Q9H6T3-3|RPAP3	MULTI-SECPEP	OvCa9_classI_Rep2	2	530.7916259765625	2	531.326934	1060.63931	-2.4176	-0.0012845	1.5591	0.0008284	-0.85849	-0.00045614	531.327632547017	62.087	0.90036	59.328	58.829	59.73	-2.7593					30	17	2	0	0	0	0.027462	1	4687	4687		14.865	0	1	43052			49056	846	40684	40712	52729	52729					0.1114201498521652
RLKKPGPPWA	10	Unmodified	_RLKKPGPPWA_					0	0	0		ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	MULTI-MSMS	OvCa9_classI_Rep3	3	575.3453369140625	2	575.3482	1148.68185	-6.2917	-0.0036199	1.4148	0.00081402	-4.8769	-0.0028059	575.3489585356984	154.97	1.0558	153.9	153.56	154.61	-1.073					68	25	4	0	0	0	0.81289	1	13359	13359		17.365	0.89182	1	137860			49057	1232	40685	40713	52730	52730					0.11345410113472099
RLKKPKWQ	8	Unmodified	_RLKKPKWQ_					0	0	0		ENST00000223073.6_1_7:127979303-127979689:-|nuORF	ENST00000223073.6_1_7:127979303-127979689:-|nuORF	ENST00000223073.6_1_7:127979303-127979689:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.7788696289062	2	542.342918	1082.67128	0.23684	0.00012845	-2.9416	-0.0015953	-2.7047	-0.0014669	542.3409667693677	103.22	0.84158	101.79	101.5	102.34	-1.4347					26	15	2	0	0	0	0.028476	1	7114	7114		28.254	14.479	1	64299			49058	9702	40686	40714	52731	52731					0.13325427459017192
RLKLKKLE	8	Unmodified	_RLKLKKLE_					0	0	0		tr|A0A7D6VPX7|A0A7D6VPX7_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18570PE=4SV=1	tr|A0A7D6VPX7|A0A7D6VPX7_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18570PE=4SV=1	tr|A0A7D6VPX7|A0A7D6VPX7_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18570PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.8011474609375	2	514.352951	1026.69135	-0.54123	-0.00027838	0.36916	0.00018988	-0.17207	-8.8507E-05	514.3529365613488	33.558	0.29458	33.558	33.434	33.728	0					8	5	2	0	0	0	0.028476	1	1561	1561		30.504	0	1	41610			49059	34806	40687	40715	52732	52732					0.17907178398991164
RLKLLMWLSRA	11	Unmodified	_RLKLLMWLSRA_					0	0	0			REV__nc|ENSG00000104883|Q96HA9-2|PEX11G	REV__nc|ENSG00000104883|Q96HA9-2|PEX11G	MULTI-SECPEP	OvCa9_classI_Rep2	2	462.93658447265625	3	462.951592	1385.83295	0.11733	5.4318E-05	-2.9804	-0.0013798	-2.8631	-0.0013255	462.9496929620169	44.557	1.2443	41.847	41.452	42.697	-2.7097					35	24	3	0	0	0	0.025677	1	2529	2529		37.6	9.956	1	35495	+		49060	17691	40688	40716	52733	52733					0.15546228429798248
RLKNRREE	8	Unmodified	_RLKNRREE_					0	0	0			REV__ENSG00000172361|ENST00000398545|CFAP53	REV__ENSG00000172361|ENST00000398545|CFAP53	MULTI-MSMS	OvCa99_classI_Rep5	1	550.818359375	2	550.817796	1099.62104	-0.40024	-0.00022046	-0.012116	-6.6736E-06	-0.41235	-0.00022713	550.8178523914296	23.016	0.98193	23.016	22.854	23.836	0					54	19	5	0	0	0	0.72896	1	320	320		37.159	0	1	3720400	+		49061	21693	40689	40717	52734	52734					0.07521273063230183
RLKPFYLV	8	Unmodified	_RLKPFYLV_					0	0	0		ENSG00000164430|ENST00000370315|CGAS;nc|ENSG00000164430|Q8N884-2|CGAS;ENST00000459924.1_1_6:74149899-74155344:-|nuORF	ENSG00000164430|ENST00000370315|CGAS	ENSG00000164430|ENST00000370315|CGAS	MULTI-MSMS	OvCa9_classI_Rep3	3	518.3158569335938	2	518.32112	1034.62769	-0.46669	-0.0002419	-4.209	-0.0021816	-4.6757	-0.0024235	518.3189098840426	93.967	3.1679	92.005	91.526	94.694	-1.9617					143	62	3	0	0	0	0.56113	1	6028	6028		71.378	0.082209	1	3024100			49062	6456	40690	40718	52735	52735					0.11175817961884604
RLKPKSVKV	9	Unmodified	_RLKPKSVKV_					0	0	0		ENSG00000173442|ENST00000309295|EHBP1L1	ENSG00000173442|ENST00000309295|EHBP1L1	ENSG00000173442|ENST00000309295|EHBP1L1	MULTI-MSMS	OvCa99_classI_Rep5	1	527.8585205078125	2	527.858401	1053.70225	-0.093343	-4.9272E-05	-0.10985	-5.7983E-05	-0.20319	-0.00010725	527.8582618906746	31.245	0.63198	31.245	31.076	31.708	0					28	12	4	0	0	0	0.27001	1	1274	1274		66.429	37.28	1	328920			49063	7376	40691	40719	52736	52736					0.177545807732713
RLKPPSNVV	9	Unmodified	_RLKPPSNVV_					0	0	0		nc|ENSG00000095319|Q5SRE5-2|NUP188;ENSG00000095319|ENST00000372577|NUP188;ENST00000477069.5_1_9:131747266-131765892:+|nuORF	nc|ENSG00000095319|Q5SRE5-2|NUP188	nc|ENSG00000095319|Q5SRE5-2|NUP188	MULTI-MSMS	OvCa99_classI_Rep5	1	505.31292724609375	2	505.311284	1008.60801	-0.67523	-0.0003412	0.43234	0.00021847	-0.24289	-0.00012273	505.3113548277766	53.413	0.89721	53.413	52.956	53.854	0					55	20	3	0	0	0	0.1804	2	4247	4247;4271		79.713	22.992	1	1829800			49064	1924	40692	40720	52737;52738	52737					0.10405441951127159
RLKQIEEQT	9	Unmodified	_RLKQIEEQT_					0	0	0		ENSG00000147065|ENST00000360270|MSN;ENST00000511640.1_1_5:25909808-25910855:+|nuORF	ENSG00000147065|ENST00000360270|MSN;ENST00000511640.1_1_5:25909808-25910855:+|nuORF	ENSG00000147065|ENST00000360270|MSN	MULTI-MSMS	OvCa99_classI_Rep5	1	572.8187255859375	2	572.81967	1143.62479	-0.87435	-0.00050085	0.60678	0.00034757	-0.26758	-0.00015327	572.8198542413725	37.548	0.64509	37.548	37.251	37.896	0					33	13	4	0	0	0	0.28934	1	2064	2064		64.207	0	1	681510			49065	5327;12984	40693	40721	52739	52739					0.058718980464163906
RLKSKDVKL	9	Unmodified	_RLKSKDVKL_					0	0	0		ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENSG00000089006|ENST00000377759|SNX5;ENST00000491090.5_1_20:17923836-17928232:-|nuORF	ENST00000490175.5_1_20:17923003-17949420:-|nuORF	ENST00000490175.5_1_20:17923003-17949420:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	543.853515625	2	543.853316	1085.69208	0.016428	8.9343E-06	-0.71835	-0.00039068	-0.70193	-0.00038174	543.8529216565697	32.18	1.2796	32.18	32.006	33.285	0					70	25	5	0	0	0	0.12515	1	1378	1378		90.37	16.115	1	3609600			49066	1803	40694	40722	52740	52740					0.152659730480309
RLKTQNVI	8	Unmodified	_RLKTQNVI_					0	0	0			REV__ENSG00000188306|ENST00000340806|LRRIQ4	REV__ENSG00000188306|ENST00000340806|LRRIQ4	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.3047790527344	2	486.303458	970.592364	0.016353	7.9527E-06	3.7435	0.0018205	3.7599	0.0018284	486.3051966587704	121.94	2.2082	120.59	120.11	122.32	-1.3479					102	43	4	0	0	0	0.66704	1	11545	11545		50.025	2.1089	1	873390	+		49067	22704	40695	40723	52741	52741					0.10589155434081476
RLKTQNVIEK	10	Unmodified	_RLKTQNVIEK_					0	0	0			REV__ENSG00000188306|ENST00000340806|LRRIQ4	REV__ENSG00000188306|ENST00000340806|LRRIQ4	MULTI-MSMS	OvCa99_classI_Rep5	1	614.87158203125	2	614.872237	1227.72992	2.3421	0.0014401	-4.1597	-0.0025577	-1.8175	-0.0011176	615.3713478220619	116.32	1.0399	116.32	115.91	116.95	0					52	22	4	0	0	0	0.59317	1	13312	13312		42.864	1.4377	1	689550	+		49068	22704	40696	40724	52742	52742					0.12516439242835986
RLLAAAMEL	9	Oxidation (M)	_RLLAAAM(Oxidation (M))EL_		RLLAAAM(1)EL		RLLAAAM(69)EL	0	0	1		ENST00000481797.5_1_1:153701080-153719633:+|nuORF	ENST00000481797.5_1_1:153701080-153719633:+|nuORF	ENST00000481797.5_1_1:153701080-153719633:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	502.2830505371094	2	502.283877	1002.5532	-0.90353	-0.00045383	-2.6919	-0.0013521	-3.5954	-0.0018059	502.28234158523946	94.835	2.2552	92.939	92.662	94.917	-1.8956					108	44	3	0	0	0	0.24951	1	6170	6170		68.787	6.6794	1	1463600			49069	12552	40697	40725	52743	52743		339			0.052026870882059484
RLLAAAMEL	9	Oxidation (M)	_RLLAAAM(Oxidation (M))EL_		RLLAAAM(1)EL		RLLAAAM(79)EL	0	0	1		ENST00000481797.5_1_1:153701080-153719633:+|nuORF	ENST00000481797.5_1_1:153701080-153719633:+|nuORF	ENST00000481797.5_1_1:153701080-153719633:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.2823791503906	2	502.283877	1002.5532	-1.6194	-0.00081338	-2.0497	-0.0010295	-3.6691	-0.0018429	502.2826598778731	95.456	2.0076	92.988	92.711	94.718	-2.4685					104	39	4	0	0	0	0.18193	1	8426	8426		79.451	13.022	1	1323100			49070	12552	40697	40725	52744	52744		339			0.052026870882059484
RLLAPLLSL	9	Unmodified	_RLLAPLLSL_					0	0	0			REV__ENSG00000160932|ENST00000292494|LY6E	REV__ENSG00000160932|ENST00000292494|LY6E	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.7471008300781	2	498.334227	994.653902	1.7429	0.00086853	0.8544	0.00042578	2.5973	0.0012943	498.3348461893101	122.47	0.22926	122.47	122.4	122.63	0					7	4	2	0	0	0	0.027462	1	14116	14116		31.955	7.7521	1	46268	+		49071	20680	40698	40726	52745	52745					0.15636087133384535
RLLARPGA	8	Unmodified	_RLLARPGA_					0	0	0		ENST00000396081.5_1_7:35734290-35734692:-|nuORF	ENST00000396081.5_1_7:35734290-35734692:-|nuORF	ENST00000396081.5_1_7:35734290-35734692:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	427.2529602050781	2	427.271961	852.52937	-0.26315	-0.00011244	-3.4618	-0.0014791	-3.725	-0.0015916	427.2722472961012	54.764	0.55939	54.764	54.505	55.064	0					17	12	2	0	0	0	0.028476	1	4459	4459		20.482	7.5226	1	106320			49072	11310	40699	40727	52746	52746					0.09720634436700948
RLLASTLVH	9	Unmodified	_RLLASTLVH_					0	0	0		nc|ENSG00000029363|Q9NYF8-4|BCLAF1;nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1	nc|ENSG00000029363|Q9NYF8-4|BCLAF1	nc|ENSG00000029363|Q9NYF8-4|BCLAF1	MULTI-MSMS	OvCa9_classI_Rep3	3	505.31024169921875	2	505.311284	1008.60801	-0.31971	-0.00016155	0.41098	0.00020767	0.091273	4.6121E-05	505.31135070665835	72.278	1.6332	69.676	69.376	71.01	-2.6023					63	32	4	0	0	0	0.29717	1	3434	3434		63.306	13.282	1	522480			49073	1062	40700	40728	52747	52747					0.10405441951127159
RLLATLRGHSA	11	Unmodified	_RLLATLRGHSA_					0	0	0		nc|ENSG00000165288|Q6RI45-2|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;nc|ENSG00000165288|Q6RI45-5|BRWD3;ENST00000478415.1_1_X:79999455-80064970:-|nuORF;BRWD3|p.I344Ffs*2|1|0.42|ENSG00000165288|chrX:80734162-80734175|CCAAATAATATATT/-|frameshift_variant	nc|ENSG00000165288|Q6RI45-2|BRWD3	nc|ENSG00000165288|Q6RI45-2|BRWD3	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8561401367188	2	597.856921	1193.69929	-3.1766	-0.0018991	2.2834	0.0013652	-0.89312	-0.00053396	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.71789	1	15068	15068		23.523	1.5628	1	436470			49074	6548	40701	40729	52748	52748					0.11018705648461946
RLLCALRR	8	Unmodified	_RLLCALRR_					0	0	0		CELSR1|p.D2180Pfs*74|1|0.14|ENSG00000075275|chr22:46389307-46389308|-/ACCCAAGACAGAAACCAGGG|frameshift_variant;nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1;nc|ENSG00000075275|Q9NYQ6-2|CELSR1	CELSR1|p.D2180Pfs*74|1|0.14|ENSG00000075275|chr22:46389307-46389308|-/ACCCAAGACAGAAACCAGGG|frameshift_variant	CELSR1|p.D2180Pfs*74|1|0.14|ENSG00000075275|chr22:46389307-46389308|-/ACCCAAGACAGAAACCAGGG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.2723083496094	2	500.81347	999.612388	-0.0067659	-3.3885E-06	-4.2325	-0.0021197	-4.2393	-0.0021231	500.8114165703812	32.478	0.24913	32.478	32.353	32.602	0					6	4	2	0	0	0	0.028476	1	1416	1416		35.201	0	1	17875			49075	218	40702	40730	52749	52749					0.11256627893044424
RLLCLAQNKR	10	Unmodified	_RLLCLAQNKR_					0	0	0		ENSG00000205669|ENST00000645972|ACOT6	ENSG00000205669|ENST00000645972|ACOT6	ENSG00000205669|ENST00000645972|ACOT6	MULTI-MSMS	OvCa99_classI_Rep5	1	405.5762634277344	3	405.576525	1213.70774	0.77558	0.00031456	-3.5922	-0.0014569	-2.8166	-0.0011424	405.57497063214674	59.889	1.1942	59.889	59.494	60.688	0					80	29	4	0	0	0	0.62712	1	5190	5190		38.754	1.2454	1	3592500			49076	9080	40703	40731	52750	52750					0.1094393629341539
RLLCLFTAI	9	Unmodified	_RLLCLFTAI_					0	0	0		tr|A0A553SIM9|A0A553SIM9_NIACIProcessedacidicsurfaceproteinOS=NialliacirculansOX=1397GN=CEQ21_15135PE=4SV=1	tr|A0A553SIM9|A0A553SIM9_NIACIProcessedacidicsurfaceproteinOS=NialliacirculansOX=1397GN=CEQ21_15135PE=4SV=1	tr|A0A553SIM9|A0A553SIM9_NIACIProcessedacidicsurfaceproteinOS=NialliacirculansOX=1397GN=CEQ21_15135PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.3135986328125	2	525.312438	1048.61032	0.1969	0.00010343	3.3102	0.0017389	3.5071	0.0018423	525.3140645319202	33.94	0.74309	31.152	30.805	31.548	-2.7881					35	14	3	0	0	0	0.6653	1	959	959		24.203	1.1603	1	58248			49077	33399	40704	40732	52751	52751					0.08796154364586073
RLLDEEISRV	10	Unmodified	_RLLDEEISRV_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MSMS	OvCa9_classI_Rep4_	4	615.3468017578125	2	615.346052	1228.67755	0.65766	0.00040469	-0.51037	-0.00031405	0.14729	9.0636E-05	615.3456169704775	84.002	1.3225	81.339	81.022	82.344	-2.6629					66	27	3	0	0	0	0.16967	2	7017	7006;7017		99.013	45.662	1	422160			49078	2909	40705	40733	52752;52753	52753					0.07235856109195993
RLLDEEISRV	10	Unmodified	_RLLDEEISRV_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MATCH	OvCa9_classI_Rep2	2		2	615.346052	1228.67755	-0.38885	-0.00023928	0.28075	0.00017276	-0.1081	-6.6522E-05	615.3461306151073	82.843	1.8897	81.244	80.488	82.378	-1.5988	-0.13968	0.00066395	NaN	99.013	84	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	335240			49079	2909	40705	40733							0.07235856109195993
RLLDEEISRV	10	Unmodified	_RLLDEEISRV_					0	0	0		nc|ENSG00000112531|Q96PU8-5|QKI;nc|ENSG00000112531|Q96PU8-9|QKI;nc|ENSG00000112531|Q96PU8-8|QKI;nc|ENSG00000112531|Q96PU8-6|QKI;nc|ENSG00000112531|Q96PU8-3|QKI;ENSG00000112531|ENST00000361752|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	nc|ENSG00000112531|Q96PU8-5|QKI	MULTI-MATCH	OvCa9_classI_Rep3	3		2	615.346052	1228.67755	0.21627	0.00013308	-0.46611	-0.00028682	-0.24984	-0.00015374	615.3456530236837	83.829	1.6367	81.568	81.211	82.848	-2.261	0.1847	-0.00025521	NaN	99.013	89	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	496650			49080	2909	40705	40733							0.07235856109195993
RLLDRKVLL	9	Unmodified	_RLLDRKVLL_					0	0	0		ENSG00000143457|ENST00000271732|GOLPH3L	ENSG00000143457|ENST00000271732|GOLPH3L	ENSG00000143457|ENST00000271732|GOLPH3L	MULTI-MSMS	OvCa99_classI_Rep5	1	563.37744140625	2	563.376958	1124.73936	0.89094	0.00050193	-1.4044	-0.00079123	-0.5135	-0.0002893	563.3759451138044	72.023	0.62469	72.023	71.749	72.374	0					32	14	3	0	0	0	0.35444	1	6990	6990		56.721	5.5284	1	1324500			49081	5057	40706	40734	52754	52754					0.18198252319029962
RLLDSALVR	9	Unmodified	_RLLDSALVR_					0	0	0		sp|F7V996|RL9A_HCMVMProteinRL9AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL9APE=4SV=1	sp|F7V996|RL9A_HCMVMProteinRL9AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL9APE=4SV=1	sp|F7V996|RL9A_HCMVMProteinRL9AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=RL9APE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	521.8238525390625	2	521.822015	1041.62948	2.0844	0.0010877	-0.15475	-8.0752E-05	1.9296	0.0010069	521.821893008884	75.632	0.91647	75.632	75.407	76.324	0					49	21	4	0	0	0	0.2422	1	7537	7537		69.628	0.78148	1	8166200			49082	32881	40707	40735	52755	52755					0.11032826979840138
RLLDYVVNI	9	Unmodified	_RLLDYVVNI_					0	0	0		nc|ENSG00000197256|Q63ZY3-3|KANK2;ENSG00000197256|ENST00000586659|KANK2;nc|ENSG00000197256|Q63ZY3-2|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	nc|ENSG00000197256|Q63ZY3-3|KANK2	MULTI-MSMS	OvCa99_classI_Rep5	1	552.8260498046875	2	552.824224	1103.63389	1.1715	0.00064764	0.62026	0.00034289	1.7918	0.00099054	552.8245313028686	124.6	2.3182	124.6	124.19	126.51	0					105	52	5	0	0	0	0.31122	1	14389	14389		61.691	8.3398	1	6022200			49083	8694	40708	40736	52756	52756					0.08622291402753035
RLLELAGR	8	Unmodified	_RLLELAGR_					0	0	0		ENSG00000280267|ENST00000624207|PRAMEF26;ENSG00000239810|ENST00000619922|PRAMEF11;ENSG00000229571|ENST00000619661|PRAMEF25;ENSG00000204501|ENST00000376152|PRAMEF15;PRAMEF20|p.R232Sfs*10|1|0.05|ENSG00000204478|chr1:13418529-13418530|-/T|frameshift_variant;PRAMEF5|p.R417Pfs*5|1|0.05|ENSG00000270601|chr1:13262923-13262924|-/C|frameshift_variant;ENSG00000204478|ENST00000602960|PRAMEF20;ENSG00000270601|ENST00000622421|PRAMEF5;ENSG00000232423|ENST00000376189|PRAMEF6;ENSG00000274764|ENST00000436041|PRAMEF27;ENSG00000243073|ENST00000235349|PRAMEF4;ENSG00000204505|ENST00000415919|PRAMEF9	ENSG00000280267|ENST00000624207|PRAMEF26	ENSG00000280267|ENST00000624207|PRAMEF26	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.2709655761719	2	464.290351	926.566149	-0.018345	-8.5175E-06	-0.54796	-0.00025441	-0.5663	-0.00026293	464.28999635343774	60.826	1.078	57.396	57.194	58.272	-3.43					28	21	2	0	0	0	0.028476	1	4205	4205		31.955	0	1	38397			49084	8993	40709	40737	52757	52757					0.0999288626261432
RLLEVPVML	9	Oxidation (M)	_RLLEVPVM(Oxidation (M))L_		RLLEVPVM(1)L		RLLEVPVM(80)L	0	0	1		ENST00000591718.1_1_19:55966993-55972941:-|nuORF;ENSG00000063241|ENST00000425675|ISOC2;nc|ENSG00000063241|Q96AB3-2|ISOC2	ENST00000591718.1_1_19:55966993-55972941:-|nuORF	ENST00000591718.1_1_19:55966993-55972941:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	543.3228759765625	2	543.323002	1084.63145	-2.0755	-0.0011277	2.188	0.0011888	0.11253	6.1139E-05	543.3239929564256	119.25	1.2315	119.08	118.81	120.04	-0.17138					52	24	3	0	0	0	0.1804	2	11465	11465;11472		79.713	35.596	1	160450			49085	1287	40710	40738	52758;52759	52758		47			0.09252119673442394
RLLEVPVML	9	Oxidation (M)	_RLLEVPVM(Oxidation (M))L_		RLLEVPVM(1)L		RLLEVPVM(55)L	0	0	1		ENST00000591718.1_1_19:55966993-55972941:-|nuORF;ENSG00000063241|ENST00000425675|ISOC2;nc|ENSG00000063241|Q96AB3-2|ISOC2	ENST00000591718.1_1_19:55966993-55972941:-|nuORF	ENST00000591718.1_1_19:55966993-55972941:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	543.322509765625	2	543.323002	1084.63145	1.2599	0.00068455	-1.667	-0.00090572	-0.40706	-0.00022117	543.3219387842813	120.3	1.3009	119.27	118.92	120.22	-1.0271					57	25	3	0	0	0	0.37135	2	9156	9152;9156		54.776	15.97	1	198450			49086	1287	40710	40738	52760;52761	52761		47			0.09252119673442394
RLLEVRGSKP	10	Unmodified	_RLLEVRGSKP_					0	0	0		nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000186298|ENST00000335007|PPP1CC;PPP1CC|p.D71Vfs*43|1|0.28|ENSG00000186298|chr12:110730735-110730736|-/TA|frameshift_variant	nc|ENSG00000186298|P36873-2|PPP1CC	nc|ENSG00000186298|P36873-2|PPP1CC	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.3235473632812	2	577.853847	1153.69314	-0.97706	-0.0005646	0.46511	0.00026877	-0.51195	-0.00029583	577.8540296401256	69.687	0.81358	69.687	69.433	70.246	0					55	19	4	0	0	0	0.02709	1	6614	6614		22.58	6.1065	1	6168700			49087	8328	40711	40739	52762	52762					0.12244187416945351
RLLGHRRA	8	Unmodified	_RLLGHRRA_					0	0	0			REV__ENST00000339570.9_1_12:125348144-125348447:-|nuORF	REV__ENST00000339570.9_1_12:125348144-125348447:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	489.8071594238281	2	489.807034	977.599515	-0.71815	-0.00035175	2.7737	0.0013586	2.0556	0.0010068	489.80821757864487	67.972	2.6273	65.311	64.644	67.271	-2.661					105	52	3	0	0	0	0.71369	1	5335	5335		40.573	3.4135	1	334510	+		49088	24615	40712	40740	52763	52763					0.1098193282517741
RLLGIWGFVVL	11	Unmodified	_RLLGIWGFVVL_					0	0	0			REV__ENST00000366472.5_1_1:249120037-249120136:-|nuORF	REV__ENST00000366472.5_1_1:249120037-249120136:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	424.91168212890625	3	424.932414	1271.77541	-1.0081	-0.00042839	-4.2298	-0.0017974	-5.238	-0.0022258	424.9303341564836	66.105	0.48412	62.617	62.323	62.807	-3.488					14	9	2	0	0	0	0.025551	1	4777	4777		24.232	0	1	24962	+		49089	24877	40713	40741	52764	52764					0.150397094958862
RLLGKALAA	9	Unmodified	_RLLGKALAA_					0	0	0		ENSG00000170502|ENST00000302174|NUDT9;ENST00000514345.1_1_4:88344057-88356249:+|nuORF;ENST00000514227.1_1_4:88344057-88355399:+|nuORF	ENSG00000170502|ENST00000302174|NUDT9	ENSG00000170502|ENST00000302174|NUDT9	MULTI-MSMS	OvCa99_classI_Rep5	1	456.8037414550781	2	456.803094	911.591636	0.05799	2.649E-05	-0.034892	-1.5939E-05	0.023098	1.0551E-05	456.8029233167148	56.671	1.0623	56.671	56.459	57.522	0					40	24	3	0	0	0	0.53957	1	4710	4710		38.806	3.6054	1	1366700			49090	7111	40714	40742	52765	52765					0.13230360785007633
RLLGLPRWRS	10	Unmodified	_RLLGLPRWRS_					0	0	0		ENST00000495019.5_2_3:125075950-125076085:-|nuORF	ENST00000495019.5_2_3:125075950-125076085:-|nuORF	ENST00000495019.5_2_3:125075950-125076085:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	627.3870239257812	2	627.383106	1252.75166	0.45246	0.00028386	-1.2709	-0.00079732	-0.81841	-0.00051346	627.381941059398	164.3	2.2705	164.3	163.48	165.75	0					225	84	3	0	0	0	0.87331	1	19231	19231		9.7057	0.52274	1	178050			49091	12767	40715	40743	52766	52766					0.1353928878206716
RLLGLRDLN	9	Unmodified	_RLLGLRDLN_					0	0	0			REV__ENST00000375023.3_1_6:32188393-32188603:-|nuORF	REV__ENST00000375023.3_1_6:32188393-32188603:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.3292846679688	2	535.327465	1068.64038	-0.57139	-0.00030588	-0.28073	-0.00015028	-0.85212	-0.00045616	535.3273569849397	60.036	1.8717	56.606	56.259	58.131	-3.43					104	37	4	0	0	0	0.50149	1	4030	4030		42.396	4.888	1	1821400	+		49092	25078	40716	40744	52767	52767					0.10880229354143012
RLLGPVLRS	9	Unmodified	_RLLGPVLRS_					0	0	0		ENST00000589764.1_1_18:12068096-12068183:-|nuORF	ENST00000589764.1_1_18:12068096-12068183:-|nuORF	ENST00000589764.1_1_18:12068096-12068183:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	505.82586669921875	2	505.827101	1009.63965	-0.85619	-0.00043308	0.13586	6.872E-05	-0.72033	-0.00036436	505.82718858176185	76.971	2.6698	75.182	74.741	77.411	-1.7894					101	51	4	0	0	0	0.28934	5	6388	6376;6382;6388;6394;6407		64.207	12.872	1	1152500			49093	14094	40717	40745	52768;52769;52770;52771;52772	52770					0.13521434705080537
RLLGPVLRS	9	Unmodified	_RLLGPVLRS_					0	0	0		ENST00000589764.1_1_18:12068096-12068183:-|nuORF	ENST00000589764.1_1_18:12068096-12068183:-|nuORF	ENST00000589764.1_1_18:12068096-12068183:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.82763671875	2	505.827101	1009.63965	-0.3073	-0.00015544	-0.2138	-0.00010814	-0.5211	-0.00026358	505.82687914944904	78.368	2.4922	75.551	75.067	77.559	-2.8165					106	51	4	0	0	0	0.46356	1	6327	6327		45.972	1.4412	1	1172000			49094	14094	40717	40745	52773	52773					0.13521434705080537
RLLHRLSNAF	10	Unmodified	_RLLHRLSNAF_					0	0	0			REV__ENST00000393066.7_1_17:57184159-57184198:-|nuORF	REV__ENST00000393066.7_1_17:57184159-57184198:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	613.333740234375	2	613.859464	1225.70437	2.5456	0.0015626	-2.1075	-0.0012937	0.43809	0.00026892	613.8580878005918	116.29	0.27625	116.29	116.09	116.37	0					8	5	2	0	0	0	0.026782	1	13275	13275		37.812	23.674	1	42368	+		49095	25273	40718	40746	52774	52774					0.10055009511074786
RLLIHRGLQ	9	Unmodified	_RLLIHRGLQ_					0	0	0		ENST00000378641.7_2_20:8113010-8113124:+|nuORF	ENST00000378641.7_2_20:8113010-8113124:+|nuORF	ENST00000378641.7_2_20:8113010-8113124:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.8244018554688	2	553.351274	1104.688	1.5973	0.00088385	1.3533	0.00074886	2.9506	0.0016327	553.3518059903469	87.527	0.37309	87.527	87.298	87.671	0					11	8	2	0	0	0	0.027462	1	9262	9262		31.955	1.4512	1	198940			49096	11110	40719	40747	52775	52775					0.13983928344987362
RLLIWQISN	9	Unmodified	_RLLIWQISN_					0	0	0		CON__Q05B55	CON__Q05B55	CON__Q05B55	MULTI-MSMS	OvCa99_classI_Rep5	1	571.8365478515625	2	571.837665	1141.66078	-0.60983	-0.00034872	-3.6963	-0.0021137	-4.3061	-0.0024624	571.835467851504	67.882	0.58777	67.882	67.604	68.192	0					40	14	4	0	0	0	0.42676	1	6397	6397		49.442	1.7842	1	4134100		+	49097	632	40720	40748	52776	52776					0.09561400013944876
RLLKHKLKV	9	Unmodified	_RLLKHKLKV_					0	0	0		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	MULTI-MSMS	OvCa99_classI_Rep5	1	567.8956298828125	2	567.895318	1133.77608	-0.21902	-0.00012438	-0.097132	-5.5161E-05	-0.31615	-0.00017954	567.8951679171249	35.363	0.88416	35.363	35.1	35.984	0					48	18	4	0	0	0	0.29717	2	1792	1769;1792		63.306	31.351	1	1113800			49098	6212	40721	40749	52777;52778	52778					0.21454548935571438
RLLLLEEHT	9	Unmodified	_RLLLLEEHT_					0	0	0			REV__ENST00000572240.5_1_16:3080380-3081406:-|nuORF	REV__ENST00000572240.5_1_16:3080380-3081406:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.3521728515625	2	562.327131	1122.63971	1.4403	0.00080992	1.5871	0.00089246	3.0274	0.0017024	562.3280926619922	81.512	0.28391	81.512	81.329	81.613	0					16	6	3	0	0	0	0.027279	1	8378	8378		94.006	3.2298	1	1128100	+		49099	27751	40722	40750	52779	52779					0.08329389914410967
RLLLPGELAK	10	Unmodified	_RLLLPGELAK_					0	0	0		ENSG00000276410|ENST00000615966|H2BC3;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000124635|ENST00000339812|H2BC11;ENSG00000146047|ENST00000274764|H2BC1;ENSG00000196890|ENST00000693095|H2BC26;HIST1H2BK|p.H110N|1|0.32|ENSG00000197903|chr6:27146471-27146471|G/T|missense_variant;ENST00000369385.5_1_1:149814898-149814982:+|nuORF;ENST00000436555.1_1_1:228651916-228652012:-|nuORF;nc|ENSG00000285480|A0A2R8Y619|H2BK1;ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;nc|ENSG00000203814|Q5QNW6-2|H2BC18	ENSG00000276410|ENST00000615966|H2BC3;ENSG00000278588|ENST00000377733|H2BC10	ENSG00000278588|ENST00000377733|H2BC10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.3267211914062	2	555.355691	1108.69683	1.7304	0.000961	-2.3337	-0.001296	-0.6033	-0.00033504	555.3542763409789	85.731	0.74477	83.085	82.848	83.593	-2.6463					32	14	3	0	0	0	0.026867	1	7220	7220		35.152	8.3559	1	65730			49100	3666;5948	40723	40751	52780	52780					0.14682857190791765
RLLLPPAPAPA	11	Unmodified	_RLLLPPAPAPA_					0	0	0			REV__ENST00000540608.5_1_18:21148944-21166448:-|nuORF	REV__ENST00000540608.5_1_18:21148944-21166448:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.2883911132812	2	558.350409	1114.68626	1.9849	0.0011083	-0.82056	-0.00045816	1.1643	0.00065009	558.3500752248668	130.11	0.33235	130.11	129.91	130.25	0					9	6	2	0	0	0	0.025959	1	15109	15109		23.042	6.5693	1	35508	+		49101	27351	40724	40752	52781	52781					0.1335087453635424
RLLLPRHLRV	10	Unmodified	_RLLLPRHLRV_					0	0	0		nc|ENSG00000134249|Q9UKF2-2|ADAM30;ENSG00000134249|ENST00000369400|ADAM30	nc|ENSG00000134249|Q9UKF2-2|ADAM30	nc|ENSG00000134249|Q9UKF2-2|ADAM30	MULTI-SECPEP	OvCa9_classI_Rep4_	4	424.91168212890625	3	424.950691	1271.83024	-1.0151	-0.00043137	0.31685	0.00013465	-0.69826	-0.00029672	424.95099262705327	66.062	0.33743	62.576	62.423	62.761	-3.4854					10	6	2	0	0	0	0.027142	1	4777	4777		27.047	11.71	1	12888			49102	4269	40725	40753	52782	52782					0.2052014108712683
RLLLPRIKN	9	Unmodified	_RLLLPRIKN_					0	0	0		ENSG00000198785|ENST00000361820|GRIN3A	ENSG00000198785|ENST00000361820|GRIN3A	ENSG00000198785|ENST00000361820|GRIN3A	MULTI-MSMS	OvCa9_classI_Rep3	3	561.87744140625	2	561.877125	1121.7397	0.97315	0.00054679	-0.95783	-0.00053818	0.015327	8.6121E-06	561.8764524181454	64.71	1.2124	61.716	61.395	62.607	-2.9933					52	23	3	0	0	0	0.56889	3	2528	2516;2528;2541		35.618	6.4687	1	78350			49103	8872	40726	40754	52783;52784;52785	52784					0.1836967203887525
RLLLPRIKN	9	Unmodified	_RLLLPRIKN_					0	0	0		ENSG00000198785|ENST00000361820|GRIN3A	ENSG00000198785|ENST00000361820|GRIN3A	ENSG00000198785|ENST00000361820|GRIN3A	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	561.877125	1121.7397	0.87677	0.00049264	-1.3098	-0.00073594	-0.43301	-0.0002433	561.8763021238402	65.345	0.87296	61.86	61.599	62.472	-3.4854	0.071849	-0.00031319	NaN	35.618	40	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70091			49104	8872	40726	40754							0.1836967203887525
RLLLPTPTV	9	Unmodified	_RLLLPTPTV_					0	0	0		nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	MULTI-MSMS	OvCa99_classI_Rep5	1	505.3278503417969	2	505.32386	1008.63317	2.2264	0.0011251	-0.062554	-3.161E-05	2.1639	0.0010935	505.3236040707525	107.43	0.5424	107.43	107.19	107.73	0					25	12	3	0	0	0	0.1944	1	12122	12122		77.318	16.346	1	1212600			49105	1260	40727	40755	52786	52786					0.1291949675368187
RLLLPVPHV	9	Unmodified	_RLLLPVPHV_					0	0	0		ENSG00000142185|ENST00000397928|TRPM2;nc|ENSG00000142185|O94759-2|TRPM2;nc|ENSG00000142185|O94759-3|TRPM2	ENSG00000142185|ENST00000397928|TRPM2	ENSG00000142185|ENST00000397928|TRPM2	MULTI-MSMS	OvCa99_classI_Rep5	1	522.339599609375	2	522.339844	1042.66514	1.896	0.00099036	0.28448	0.0001486	2.1805	0.001139	522.3398489687598	99.613	1.0425	99.613	99.195	100.24	0					48	24	3	0	0	0	0.61208	1	11026	11026		30.504	5.0535	1	1069500			49106	4959	40728	40756	52787	52787					0.14550909227500597
RLLLRPALA	9	Unmodified	_RLLLRPALA_					0	0	0			REV__CLPB|p.K10R|1|0.67|ENSG00000162129|chr11:72434446-72434446|T/C|missense_variant	REV__CLPB|p.K10R|1|0.67|ENSG00000162129|chr11:72434446-72434446|T/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.84417724609375	2	511.845294	1021.67603	-0.96418	-0.00049351	-0.6932	-0.00035481	-1.6574	-0.00084832	511.84483208819705	100.83	2.6819	98.563	98.03	100.71	-2.2665					97	52	3	0	0	0	0.67509	1	9083	9083		23.042	0	1	723630	+		49107	16151	40729	40757	52788	52788					0.16606311601788093
RLLLRPDQL	9	Unmodified	_RLLLRPDQL_					0	0	0			REV__ENSG00000166105|ENST00000431683|GLB1L3	REV__ENSG00000166105|ENST00000431683|GLB1L3	MULTI-MSMS	OvCa99_classI_Rep5	1	562.3521728515625	2	562.35094	1122.68733	1.6192	0.00091056	0.34533	0.0001942	1.9645	0.0011048	562.3509134216674	81.523	1.616	81.523	81.12	82.736	0					96	38	4	0	0	0	0.13504	1	8378	8378		87.696	9.4327	1	4307300	+		49108	21156	40730	40758	52789	52789					0.13089088905257995
RLLLSEHY	8	Unmodified	_RLLLSEHY_					0	0	0		nc|ENSG00000197603|Q9H799|CPLANE1;ENSG00000197603|ENST00000651892|CPLANE1;ENST00000509849.5_1_5:37107706-37125531:-|nuORF	nc|ENSG00000197603|Q9H799|CPLANE1	nc|ENSG00000197603|Q9H799|CPLANE1	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.75146484375	2	515.787641	1029.56073	-0.61355	-0.00031646	-1.9763	-0.0010194	-2.5899	-0.0013358	515.785400819819	41.382	0.27021	41.382	41.149	41.42	0					8	5	2	0	0	0	0.028476	1	2572	2572		28.254	0	1	46819			49109	8727	40731	40759	52790	52790					0.04713162680127425
RLLNQTDTV	9	Unmodified	_RLLNQTDTV_					0	0	0		ENST00000522169.1_1_5:160038940-160039876:-|nuORF;ENSG00000118322|ENST00000327245|ATP10B	ENST00000522169.1_1_5:160038940-160039876:-|nuORF	ENST00000522169.1_1_5:160038940-160039876:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.2964477539062	2	530.293288	1058.57202	-3.0838	-0.0016353	2.4791	0.0013147	-0.60468	-0.00032066	530.2948107019809	35.867	0.7961	33.158	32.9	33.696	-2.7097					19	15	2	0	0	0	0.027462	1	1477	1477		27.882	0	1	27252			49110	3302	40732	40760	52791	52791					0.045079399835913136
RLLNRGGINL	10	Unmodified	_RLLNRGGINL_					0	0	0			REV__tr|A0A7D6ZRQ2|A0A7D6ZRQ2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13105PE=4SV=1	REV__tr|A0A7D6ZRQ2|A0A7D6ZRQ2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13105PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.3491821289062	2	563.346189	1124.67783	1.893	0.0010664	1.3197	0.00074344	3.2127	0.0018098	563.3468115501491	89.862	1.6698	87.287	86.851	88.52	-2.575					88	32	3	0	0	0	0.41408	1	7720	7720		66.429	8.618	1	492310	+		49111	32163	40733	40761	52792	52792					0.12047320619740276
RLLPAALLPL	10	Unmodified	_RLLPAALLPL_					0	0	0			REV__ENST00000461701.5_1_11:64681968-64684599:-|nuORF	REV__ENST00000461701.5_1_11:64681968-64684599:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	538.8622436523438	2	538.863152	1075.71175	0.50313	0.00027112	-1.3946	-0.0007515	-0.89148	-0.00048038	538.8625358740957	133.13	11.263	132	131.63	142.9	-1.1249					494	228	5	0	0	0	0.58282	3	10863	10863;11057;11230		44.117	6.9577	1	10229000	+		49112	25117	40734	40762	52793;52794;52795	52793					0.17692349058779655
RLLPEKLTI	9	Unmodified	_RLLPEKLTI_					0	0	0		ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	ENSG00000136937|ENST00000375147|NCBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	541.8511962890625	2	541.850242	1081.68593	2.0839	0.0011291	-0.23815	-0.00012904	1.8457	0.0010001	541.8499888832415	91.464	0.49846	91.464	91.213	91.711	0					27	11	3	0	0	0	0.38969	1	9851	9851		52.937	1.6012	1	819210			49113	4537	40735	40763	52796	52796					0.14835454816511628
RLLPGNATI	9	Unmodified	_RLLPGNATI_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	OvCa99_classI_Rep5	1	477.7914733886719	2	477.790184	953.565815	2.1622	0.0010331	0.36647	0.0001751	2.5287	0.0012082	477.79023443421545	85.607	0.7731	85.607	85.38	86.153	0					38	18	3	0	0	0	0.053172	1	8989	8989		116.9	8.8161	1	2417700			49114	7356	40736	40764	52797	52797					0.08717466542748298
RLLPGNATISK	11	Unmodified	_RLLPGNATISK_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	OvCa9_classI_Rep4_	4	585.3543701171875	2	585.35368	1168.69281	-0.41817	-0.00024478	0.15922	9.32E-05	-0.25895	-0.00015158	585.353722400679	64.229	1.36	60.754	60.442	61.802	-3.475					76	27	4	0	0	0	0.059072	2	4557	4557;4569		128.6	48.89	1	916000			49115	7356	40737	40765	52798;52799	52798					0.11520767697084011
RLLPGNATISK	11	Unmodified	_RLLPGNATISK_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MATCH	OvCa9_classI_Rep2	2		2	585.35368	1168.69281	-1.7593	-0.0010298	1.6498	0.0009657	-0.10953	-6.4111E-05	585.3545325407516	63.395	1.7871	60.651	60.004	61.791	-2.7444	-0.051566	0.00045161	NaN	128.6	99	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	344200			49116	7356	40737	40765							0.11520767697084011
RLLPPLLQ	8	Unmodified	_RLLPPLLQ_					0	0	0		ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;IPO4|p.V778Sfs*9|1|0.14|ENSG00000196497|chr14:24183063-24183066|CACC/-|frameshift_variant;ENST00000558780.5_2_14:24651254-24657791:-|nuORF;ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4	ENST00000561199.5_1_14:24652794-24657993:-|nuORF	ENST00000561199.5_1_14:24652794-24657993:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.31317138671875	2	475.313295	948.612037	1.0224	0.00048597	-1.4538	-0.00069099	-0.43134	-0.00020502	475.3124814237158	114.68	1.7771	113.28	112.89	114.66	-1.3977					72	34	4	0	0	0	0.39692	1	10676	10676		88.643	0	1	373550			49117	8614	40738	40766	52800	52800					0.1356753144484628
RLLPPLLQI	9	Unmodified	_RLLPPLLQI_					0	0	0		ENST00000561199.5_1_14:24652794-24657993:-|nuORF;ENST00000559588.5_1_14:24652221-24657802:-|nuORF;IPO4|p.V778Sfs*9|1|0.14|ENSG00000196497|chr14:24183063-24183066|CACC/-|frameshift_variant;ENST00000558780.5_2_14:24651254-24657791:-|nuORF;ENSG00000196497|ENST00000354464|IPO4;nc|ENSG00000196497|Q8TEX9-2|IPO4	ENST00000561199.5_1_14:24652794-24657993:-|nuORF	ENST00000561199.5_1_14:24652794-24657993:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	532.3585205078125	2	531.855327	1061.6961	1.7298	0.00092001	-0.24679	-0.00013126	1.483	0.00078875	531.8550355103039	135.75	0.70555	135.75	135.36	136.07	0					20	14	2	0	0	0	0.46377	1	15813	15813		45.952	3.5558	1	41407			49118	8614	40739	40767	52801	52801					0.16772062541758714
RLLPPVAAAQP	11	Unmodified	_RLLPPVAAAQP_					0	0	0		ENST00000392505.6_1_2:179059315-179149708:+|nuORF	ENST00000392505.6_1_2:179059315-179149708:+|nuORF	ENST00000392505.6_1_2:179059315-179149708:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.8128662109375	2	566.84549	1131.67643	-0.23847	-0.00013518	-0.83357	-0.00047251	-1.072	-0.00060768	566.8448541463458	67.861	0.46738	67.861	67.528	67.996	0					19	11	2	0	0	0	0.025496	1	6366	6366		40.778	0	1	600420			49119	11227	40740	40768	52802	52802					0.11585686530975181
RLLPRRRR	8	Unmodified	_RLLPRRRR_					0	0	0			REV__ENSG00000145743|ENST00000542267|FBXL17	REV__ENSG00000145743|ENST00000542267|FBXL17	MULTI-MSMS	OvCa9_classI_Rep3	3	561.87744140625	2	561.875782	1121.73701	0.97316	0.00054679	1.4318	0.00080449	2.4049	0.0013513	561.8764524181454	64.71	1.2124	61.716	61.395	62.607	-2.9933					52	23	3	0	0	0	0.74229	1	2522	2522		30.504	1.3541	1	78350	+		49120	19982	40741	40769	52803	52803					0.1810126142459012
RLLPSYIKK	9	Unmodified	_RLLPSYIKK_					0	0	0			REV__ENST00000394634.6_2_4:110687906-110723179:-|nuORF	REV__ENST00000394634.6_2_4:110687906-110723179:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	559.3575439453125	2	559.358234	1116.70191	0.50754	0.0002839	-1.0575	-0.00059152	-0.54995	-0.00030762	559.3575350916004	97.322	1.4237	96.363	96.068	97.492	-0.95856					78	28	4	0	0	0	0.3076	1	8807	8807		62.107	3.8775	1	533000	+		49121	25299	40742	40770	52804	52804					0.1482316105341397
RLLPTAPM	8	Unmodified	_RLLPTAPM_					0	0	0		ENST00000322475.12_2_13:51855097-51855319:+|nuORF	ENST00000322475.12_2_13:51855097-51855319:+|nuORF	ENST00000322475.12_2_13:51855097-51855319:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	449.7658996582031	2	449.762581	897.510608	5.9884	0.0026934	-1.6684	-0.00075039	4.32	0.001943	449.7616579337906	25.669	0.8354	22.96	22.778	23.613	-2.7097					39	19	3	0	0	0	0.74816	1	313	313		15.636	0	1	137640			49122	10384	40743	40771	52805	52805					0.057753367506279574
RLLPVCLL	8	Unmodified	_RLLPVCLL_					0	0	0			REV__ENST00000473087.1_1_2:10822102-10830002:-|nuORF	REV__ENST00000473087.1_1_2:10822102-10830002:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	463.7980041503906	2	463.796423	925.578294	0.21037	9.7568E-05	3.1309	0.0014521	3.3413	0.0015497	463.7978667804196	70.561	4.2201	67.99	67.714	71.934	-2.5707					173	80	4	0	0	0	0.72134	2	5655	5655;5661		39.021	7.0666	1	2590100	+		49123	26324	40744	40772	52806;52807	52806					0.11252786681427551
RLLPVCLL	8	Unmodified	_RLLPVCLL_					0	0	0			REV__ENST00000473087.1_1_2:10822102-10830002:-|nuORF	REV__ENST00000473087.1_1_2:10822102-10830002:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	463.7981262207031	2	463.796423	925.578294	0.29403	0.00013637	3.2747	0.0015188	3.5687	0.0016552	463.7979721487958	70.79	6.0908	68.07	67.699	73.79	-2.7196					279	121	5	0	0	0	0.57589	6	3233	3230;3233;3245;3251;3269;3275		69.093	17.19	1	3593600	+		49124	26324	40744	40772	52808;52809;52810;52811;52812;52813	52809					0.11252786681427551
RLLQKVLAY	9	Unmodified	_RLLQKVLAY_					0	0	0		ENSG00000179134|ENST00000610417|SAMD4B	ENSG00000179134|ENST00000610417|SAMD4B	ENSG00000179134|ENST00000610417|SAMD4B	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.3517456054688	2	552.350409	1102.68626	-0.18484	-0.0001021	-0.059877	-3.3073E-05	-0.24472	-0.00013517	552.350232386143	90.822	2.09	88.247	87.75	89.84	-2.575					100	40	4	0	0	0	0.29717	1	7834	7834		63.306	19.189	1	320710			49125	7805	40745	40773	52814	52814					0.13902874536347554
RLLQKVLAY	9	Unmodified	_RLLQKVLAY_					0	0	0		ENSG00000179134|ENST00000610417|SAMD4B	ENSG00000179134|ENST00000610417|SAMD4B	ENSG00000179134|ENST00000610417|SAMD4B	MULTI-MATCH	OvCa9_classI_Rep3	3		2	552.350409	1102.68626	-1.0733	-0.00059282	0.83834	0.00046306	-0.23493	-0.00012976	552.3507299241959	90.281	2.0871	88.2	87.696	89.783	-2.0805	-0.02343	0.00045196	NaN	63.306	108	40	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	367180			49126	7805	40745	40773							0.13902874536347554
RLLQLAKDH	9	Unmodified	_RLLQLAKDH_					0	0	0			REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26;REV__ZFYVE26-NEMF|1|fusion	REV__nc|ENSG00000072121|Q68DK2-5|ZFYVE26	MULTI-MSMS	OvCa99_classI_Rep5	1	547.3295288085938	2	547.327465	1092.64038	-0.5311	-0.00029069	-0.3269	-0.00017892	-0.85801	-0.00046961	547.3271242122657	63.586	2.4189	63.586	62.253	64.672	0					181	59	4	0	0	0	0.053172	3	5806	5717;5777;5806		116.9	14.13	1	4975300	+		49127	16911;32770	40746	40774	52815;52816;52817	52817					0.0977622935411091
RLLQLRAG	8	Unmodified	_RLLQLRAG_					0	0	0		ENSG00000162777|ENST00000357640|DENND2D;ENST00000473682.5_1_1:111740397-111743081:-|nuORF	ENSG00000162777|ENST00000357640|DENND2D;ENST00000473682.5_1_1:111740397-111743081:-|nuORF	ENSG00000162777|ENST00000357640|DENND2D	MULTI-MSMS	OvCa9_classI_Rep3	3	463.79852294921875	2	463.798343	925.582134	0.29403	0.00013637	-0.86487	-0.00040112	-0.57084	-0.00026475	463.7979721487958	70.79	6.0908	68.07	67.699	73.79	-2.7196					279	121	5	0	0	0	0.66704	1	3239	3239		50.025	0.81375	1	3593600			49128	6233;12418	40747	40775	52818	52818					0.1163659249950797
RLLRAKDPP	9	Unmodified	_RLLRAKDPP_					0	0	0			REV__ENSG00000157827|ENST00000288670|FMNL2;REV__nc|ENSG00000161791|Q8IVF7-2|FMNL3	REV__ENSG00000157827|ENST00000288670|FMNL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.317626953125	2	533.330008	1064.64546	-0.12648	-6.7453E-05	-0.025219	-1.345E-05	-0.1517	-8.0904E-05	533.3298570754833	34.958	0.90313	32.115	31.942	32.845	-2.8429					36	17	3	0	0	0	0.027462	1	1150	1150		30.504	7.4612	1	83234	+		49129	20535;20707	40748	40776	52819	52819					0.11572533216735792
RLLRCCPRL	9	Unmodified	_RLLRCCPRL_					0	0	0		ENST00000534939.2_2_15:63892815-63893235:+|nuORF;ENSG00000197361|ENST00000638704|FBXL22	ENST00000534939.2_2_15:63892815-63893235:+|nuORF	ENST00000534939.2_2_15:63892815-63893235:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	565.3251953125	2	565.325888	1128.63722	0.38003	0.00021484	-1.9863	-0.0011229	-1.6063	-0.00090807	565.3248218929846	32.675	0.38947	32.675	32.503	32.892	0					28	7	5	0	0	0	0.22961	1	1438	1438		71.296	2.5089	1	3784000			49130	8704	40749	40777	52820	52820					0.07804939704101344
RLLRGHDP	8	Unmodified	_RLLRGHDP_					0	0	0			REV__ENST00000319084.9_1_1:6640084-6640779:+|nuORF	REV__ENST00000319084.9_1_1:6640084-6640779:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.28985595703125	2	482.277775	962.540997	-0.4914	-0.00023699	3.135	0.0015119	2.6436	0.0012749	482.2791647442718	94.158	1.1144	91.69	91.296	92.41	-2.4685					38	22	2	0	0	0	0.028476	1	8324	8324		60.294	2.8413	1	161110	+		49131	24430	40750	40778	52821	52821					0.058228314600341946
RLLRLSSR	8	Unmodified	_RLLRLSSR_					0	0	0			REV__ENSG00000079432|ENST00000681038|CIC	REV__ENSG00000079432|ENST00000681038|CIC	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.82623291015625	2	500.82235	999.630147	-0.70232	-0.00035174	4.0643	0.0020355	3.362	0.0016838	500.82426175027206	62.48	3.824	59.023	58.382	62.206	-3.4577					194	78	4	0	0	0	0.72896	1	4334	4334		37.159	0	1	1001200	+		49132	17043	40751	40779	52822	52822					0.130316664195675
RLLRPFRCR	9	Unmodified	_RLLRPFRCR_					0	0	0			REV__nc|ENSG00000129255|O75352-2|MPDU1	REV__nc|ENSG00000129255|O75352-2|MPDU1	MULTI-SECPEP	OvCa99_classI_Rep5	1	609.819091796875	2	608.864026	1215.7135	0.42741	0.00026023	4.1729	0.0025408	4.6004	0.002801	608.8663610011513	57.815	0.46087	57.815	57.609	58.069	0					15	10	2	0	0	0	0.027462	1	4891	4891		11.511	0	1	170340	+		49133	28843	40752	40780	52823	52823					0.11427079595750911
RLLRVHAS	8	Unmodified	_RLLRVHAS_					0	0	0		ENST00000428708.6_1_17:79089831-79089936:+|nuORF	ENST00000428708.6_1_17:79089831-79089936:+|nuORF	ENST00000428708.6_1_17:79089831-79089936:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.238037109375	2	476.295968	950.577383	-0.31852	-0.00015171	-0.046753	-2.2268E-05	-0.36527	-0.00017398	476.29578826934824	40.502	0.27922	40.502	40.34	40.619	0					9	5	2	0	0	0	0.028476	1	2453	2453		20.482	0	1	68467			49134	11775	40753	40781	52824	52824					0.10011708356751114
RLLRVPGLRA	10	Unmodified	_RLLRVPGLRA_					0	0	0		ENST00000320640.10_1_16:47493082-47495095:-|nuORF	ENST00000320640.10_1_16:47493082-47495095:-|nuORF	ENST00000320640.10_1_16:47493082-47495095:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8806762695312	2	575.880199	1149.74584	-0.33635	-0.0001937	2.4703	0.0014226	2.1339	0.0012289	575.8816146863785	130.37	1.3721	129.25	128.83	130.21	-1.1121					69	27	4	0	0	0	0.66721	1	10412	10412		34.173	9.9698	1	151570			49135	10368	40754	40782	52825	52825					0.17696190270407897
RLLRWWRRQLL	11	Unmodified	_RLLRWWRRQLL_					0	0	0		ENST00000393313.5_1_7:127032353-127032743:-|nuORF	ENST00000393313.5_1_7:127032353-127032743:-|nuORF	ENST00000393313.5_1_7:127032353-127032743:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.2669677734375	3	532.663433	1594.96847	-0.70926	-0.0003778	-3.0654	-0.0016328	-3.7747	-0.0020106	532.6616945057075	35.028	0.33488	35.028	34.911	35.246	0					9	6	2	0	0	0	0.02656	1	1732	1732		0.3405	0	1	33610			49136	11244	40755	40783	52826	52826					0.1947826433561204
RLLSAERAV	9	Unmodified	_RLLSAERAV_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	OvCa99_classI_Rep5	1	507.8077392578125	2	507.806365	1013.59818	-0.00052553	-2.6687E-07	-0.55727	-0.00028299	-0.5578	-0.00028325	507.8060076264701	52.517	1.1732	52.517	52.259	53.432	0					55	26	3	0	0	0	0.17606	1	4132	4132		80.455	6.1996	1	5878900			49137	7740	40756	40784	52827	52827					0.09192253945752782
RLLSHLLAF	9	Unmodified	_RLLSHLLAF_					0	0	0		CELSR3|p.A2235S|1|0.23|ENSG00000008300|chr3:48648793-48648793|C/A|missense_variant	CELSR3|p.A2235S|1|0.23|ENSG00000008300|chr3:48648793-48648793|C/A|missense_variant	CELSR3|p.A2235S|1|0.23|ENSG00000008300|chr3:48648793-48648793|C/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	535.32666015625	2	535.329476	1068.6444	-1.2502	-0.00066929	-2.9485	-0.0015784	-4.1988	-0.0022477	535.3279070397938	59.315	2.607	56.535	55.888	58.495	-2.7801					134	49	4	0	0	0	0.46377	1	4324	4324		45.952	5.8938	1	990330			49138	220	40757	40785	52828	52828					0.11282318847838724
RLLSKNSLLLK	11	Unmodified	_RLLSKNSLLLK_					0	0	0		ENST00000305135.9_1_3:183432942-183435501:+|nuORF	ENST00000305135.9_1_3:183432942-183435501:+|nuORF	ENST00000305135.9_1_3:183432942-183435501:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	428.9498596191406	3	428.950245	1283.82891	0.41312	0.00017721	-0.45287	-0.00019426	-0.03975	-1.7051E-05	428.94997115966225	73.462	2.1703	70.975	70.432	72.602	-2.4873					113	43	4	0	0	0	0.01107	2	3579	3579;3584		160.72	62.54	1	345950			49139	10234	40758	40786	52829;52830	52829					0.19834462207745673
RLLSKNSLLLK	11	Unmodified	_RLLSKNSLLLK_					0	0	0		ENST00000305135.9_1_3:183432942-183435501:+|nuORF	ENST00000305135.9_1_3:183432942-183435501:+|nuORF	ENST00000305135.9_1_3:183432942-183435501:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	428.950245	1283.82891	0.25973	0.00011141	-0.48395	-0.00020759	-0.22422	-9.6179E-05	428.94994847884806	74.339	1.6797	71.108	70.769	72.449	-3.2308	0.066777	-2.9783E-05	NaN	160.72	87	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	315060			49140	10234	40758	40786							0.19834462207745673
RLLSPPLRPR	10	Unmodified	_RLLSPPLRPR_					0	0	0		nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN	nc|ENSG00000088812|O75882-2|ATRN	nc|ENSG00000088812|O75882-2|ATRN	MULTI-MSMS	OvCa9_classI_Rep2	2	402.25830078125	3	402.259413	1203.75641	0.12389	4.9836E-05	-0.29787	-0.00011982	-0.17398	-6.9986E-05	402.2592247772231	63.349	2.2597	60.605	60.108	62.368	-2.7444					117	42	4	0	0	0	0.14958	3	4781	4781;4805;4810		102.06	42.572	1	729410			49141	1793	40759	40787	52831;52832;52833	52831					0.16268172924810642
RLLSPPLRPR	10	Unmodified	_RLLSPPLRPR_					0	0	0		nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN	nc|ENSG00000088812|O75882-2|ATRN	nc|ENSG00000088812|O75882-2|ATRN	MULTI-MSMS	OvCa9_classI_Rep3	3	402.2594909667969	3	402.259413	1203.75641	2.4514	0.00098611	-2.5146	-0.0010115	-0.063205	-2.5425E-05	402.2583865994798	63.638	2.5051	60.645	60.102	62.607	-2.9933					122	49	5	0	0	0	0.029272	17	2413	2372;2378;2384;2389;2395;2401;2407;2413;2417;2423;2429;2435;2441;2447;2453;2461;2468		136.99	45.283	1	686330			49142	1793	40759	40787	52834;52835;52836;52837;52838;52839;52840;52841;52842;52843;52844;52845;52846;52847;52848;52849;52850	52841					0.16268172924810642
RLLSPPLRPR	10	Unmodified	_RLLSPPLRPR_					0	0	0		nc|ENSG00000088812|O75882-2|ATRN;ENSG00000088812|ENST00000262919|ATRN	nc|ENSG00000088812|O75882-2|ATRN	nc|ENSG00000088812|O75882-2|ATRN	MULTI-MSMS	OvCa9_classI_Rep4_	4	402.259521484375	3	402.259413	1203.75641	2.1547	0.00086676	-2.1892	-0.00088061	-0.034436	-1.3852E-05	402.2584556273305	64.404	2.1373	60.929	60.442	62.579	-3.475					104	43	4	0	0	0	0.25842	1	4580	4580		85.862	13.619	1	824710			49143	1793	40759	40787	52851	52851					0.16268172924810642
RLLSRSTWPHW	11	Unmodified	_RLLSRSTWPHW_					0	0	0		ENSG00000166866|ENST00000300119|MYO1A	ENSG00000166866|ENST00000300119|MYO1A	ENSG00000166866|ENST00000300119|MYO1A	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.31365966796875	3	480.261594	1437.76295	0.16449	7.8997E-05	-4.3531	-0.0020906	-4.1886	-0.0020116	480.25943664554717	31.683	0.54608	31.683	31.509	32.055	0					29	10	5	0	0	0	0.02625	1	1312	1312		18.531	2.0012	1	346350			49144	6726	40760	40788	52852	52852					0.061580660855497626
RLLVAPLL	8	Unmodified	_RLLVAPLL_					0	0	0		ENSG00000170382|ENST00000367177|LRRN2	ENSG00000170382|ENST00000367177|LRRN2	ENSG00000170382|ENST00000367177|LRRN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	447.8097839355469	2	447.810388	893.606223	2.7892	0.001249	-2.8374	-0.0012706	-0.048227	-2.1597E-05	447.80901078809313	136.31	1.365	134.77	134.4	135.76	-1.5437					55	27	3	0	0	0	0.74679	1	13267	13267		28.254	0	1	73419			49145	7098	40761	40789	52853	52853					0.1551643293316829
RLLVAPLLL	9	Unmodified	_RLLVAPLLL_					0	0	0		ENSG00000170382|ENST00000367177|LRRN2	ENSG00000170382|ENST00000367177|LRRN2	ENSG00000170382|ENST00000367177|LRRN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.78729248046875	2	504.35242	1006.69029	1.4691	0.00074096	0.53527	0.00026996	2.0044	0.0010109	504.35241445206856	147.87	0.67674	147.87	147.55	148.23	0					25	13	3	0	0	0	0.027449	1	17314	17314		60.294	0	1	63363			49146	7098	40762	40790	52854	52854					0.18720964030080722
RLLVQDKQNQ	10	Unmodified	_RLLVQDKQNQ_					0	0	0		tr|A0A553SJR6|A0A553SJR6_NIACIDUF2524familyproteinOS=NialliacirculansOX=1397GN=CEQ21_17415PE=4SV=1	tr|A0A553SJR6|A0A553SJR6_NIACIDUF2524familyproteinOS=NialliacirculansOX=1397GN=CEQ21_17415PE=4SV=1	tr|A0A553SJR6|A0A553SJR6_NIACIDUF2524familyproteinOS=NialliacirculansOX=1397GN=CEQ21_17415PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	415.26031494140625	3	414.570204	1240.68878	-1.0141	-0.00042041	1.1276	0.00046747	0.11351	4.706E-05	414.5705309668205	34.662	0.54522	31.952	31.761	32.306	-2.7097					15	10	2	0	0	0	0.027142	1	1332	1332		27.047	4.4857	1	10619			49147	33536	40763	40791	52855	52855					0.07806678203382944
RLLWPQDEPR	10	Unmodified	_RLLWPQDEPR_					0	0	0			REV__ENSG00000125651|ENST00000394456|GTF2F1	REV__ENSG00000125651|ENST00000394456|GTF2F1	MULTI-SECPEP	OvCa99_classI_Rep5	1	437.254638671875	3	437.238566	1308.69387	-0.17023	-7.4433E-05	-2.7804	-0.0012157	-2.9507	-0.0012902	437.2375477944598	44.136	0.52956	44.136	43.866	44.396	0					14	11	2	0	0	0	0.027062	1	2970	2970		20.03	7.5976	1	197730	+		49148	18736	40764	40792	52856	52856					0.05186982065970369
RLMHPPVKLLL	11	Unmodified	_RLMHPPVKLLL_					0	0	0			REV__ENST00000574215.5_1_3:27203940-27332977:-|nuORF	REV__ENST00000574215.5_1_3:27203940-27332977:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	439.61419677734375	3	439.612687	1315.81623	1.9092	0.00083931	1.3021	0.00057243	3.2113	0.0014117	439.61298819523574	62.611	0.99952	59.577	59.214	60.214	-3.0339					41	19	3	0	0	0	0.72511	1	2298	2298		14.086	0.57807	1	32046	+		49149	27762	40765	40793	52857	52857					0.17095727543869543
RLMMEHVL	8	Unmodified	_RLMMEHVL_					0	0	0		ENSG00000146909|ENST00000275820|NOM1	ENSG00000146909|ENST00000275820|NOM1	ENSG00000146909|ENST00000275820|NOM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.3353881835938	2	514.772622	1027.53069	-0.17342	-8.9274E-05	4.266	0.002196	4.0926	0.0021067	514.7747971574446	67.501	0.38419	67.501	67.298	67.683	0					15	9	2	0	0	0	0.028476	1	6320	6320		26.796	0	1	387770			49150	5317	40766	40794	52858	52858					0.018027644189260172
RLMQIKNQI	9	Unmodified	_RLMQIKNQI_					0	0	0		ENSG00000198356|ENST00000357332|GET3;SCYL1-ASNA1|1|fusion	ENSG00000198356|ENST00000357332|GET3	ENSG00000198356|ENST00000357332|GET3	MULTI-MSMS	OvCa99_classI_Rep5	1	572.3409423828125	2	572.336975	1142.6594	0.057966	3.3176E-05	-1.4217	-0.00081371	-1.3638	-0.00078053	572.3370824049541	62.951	0.59798	62.951	62.621	63.219	0					28	14	3	0	0	0	0.068524	1	5636	5636		108.09	20.391	1	1684700			49151	8810	40767	40795	52859	52859					0.09377442653544676
RLMRKIVFYFI	11	Unmodified	_RLMRKIVFYFI_					0	0	0			REV__tr|A0A553SU77|A0A553SU77_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_06495PE=3SV=1	REV__tr|A0A553SU77|A0A553SU77_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_06495PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	495.9586486816406	3	495.963609	1484.869	-6.9468	-0.0034453	-2.9112	-0.0014439	-9.858	-0.0048892	495.96210445138047	163.05	2.2058	161.66	160.17	162.38	-1.3926					163	48	5	0	0	0	0.72507	1	14255	14255		14.694	1.1857	1	227040	+		49152	31048	40768	40796	52860	52860					0.14595685606673214
RLMRRHKRRRR	11	Unmodified	_RLMRRHKRRRR_					0	0	0		nc|ENSG00000161202|Q92997-2|DVL3;ENSG00000161202|ENST00000313143|DVL3;ENST00000478247.1_1_3:183882805-183888540:+|nuORF	nc|ENSG00000161202|Q92997-2|DVL3	nc|ENSG00000161202|Q92997-2|DVL3	MULTI-MSMS	OvCa9_classI_Rep2	2	541.3369750976562	3	541.006198	1619.99677	-5.5822	-0.00302	-0.83452	-0.00045148	-6.4167	-0.0034715	541.0056928020558	162.79	0.27551	162.57	162.4	162.68	-0.22696					14	5	4	0	0	0	0.72573	2	16599	16596;16599		6.001	4.5823	1	520820			49153	6122	40769	40797	52861;52862	52862					0.21156683763911133
RLMRRHKRRRR	11	Unmodified	_RLMRRHKRRRR_					0	0	0		nc|ENSG00000161202|Q92997-2|DVL3;ENSG00000161202|ENST00000313143|DVL3;ENST00000478247.1_1_3:183882805-183888540:+|nuORF	nc|ENSG00000161202|Q92997-2|DVL3	nc|ENSG00000161202|Q92997-2|DVL3	MULTI-MATCH	OvCa9_classI_Rep3	3		3	541.006198	1619.99677	-6.2922	-0.0034041	-2.6392	-0.0014278	-8.9314	-0.004832	541.0043781723032	163.98	0.34262	162.59	162.38	162.72	-1.3925	0.031492	-0.0020021	NaN	6.001	20	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	951550			49154	6122	40769	40797							0.21156683763911133
RLMRRHKRRRR	11	Unmodified	_RLMRRHKRRRR_					0	0	0		nc|ENSG00000161202|Q92997-2|DVL3;ENSG00000161202|ENST00000313143|DVL3;ENST00000478247.1_1_3:183882805-183888540:+|nuORF	nc|ENSG00000161202|Q92997-2|DVL3	nc|ENSG00000161202|Q92997-2|DVL3	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	541.006198	1619.99677	-7.1456	-0.0038658	-1.3549	-0.00073299	-8.5005	-0.0045988	541.0051881839817	164.15	0.33298	162.51	162.32	162.65	-1.6346	-0.043417	8.2405E-05	NaN	6.001	17	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	296720			49155	6122	40769	40797							0.21156683763911133
RLMRRRKRRKQ	11	Unmodified	_RLMRRRKRRKQ_					0	0	0			REV__nc|ENSG00000131149|Q14687-2|GSE1	REV__nc|ENSG00000131149|Q14687-2|GSE1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.6485595703125	3	528.670704	1582.99028	1.8082	0.00095596	-3.4586	-0.0018285	-1.6504	-0.00087251	529.0040103006587	106.02	0.17566	106.02	105.92	106.1	0					5	3	2	0	0	0	0.026497	1	11914	11914		6.001	0.58812	1	46662	+		49156	19000	40770	40798	52863	52863					0.2221074581252651
RLMRSLVD	8	Unmodified	_RLMRSLVD_					0	0	0			REV__ENST00000567567.5_1_15:31233675-31258111:-|nuORF	REV__ENST00000567567.5_1_15:31233675-31258111:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	494.29443359375	2	495.281669	988.548785	1.9536	0.00096756	3.6915	0.0018283	5.645	0.0027959	495.28332897628616	90.305	1.1505	89.003	88.631	89.781	-1.302					40	22	2	0	0	0	0.028476	1	8062	8062		35.618	0	1	98782	+		49157	21236	40771	40799	52864	52864					0.054052226652856916
RLNANPDWG	9	Unmodified	_RLNANPDWG_					0	0	0			REV__ENST00000492155.5_1_10:13735712-13749128:-|nuORF	REV__ENST00000492155.5_1_10:13735712-13749128:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.81201171875	2	521.756872	1041.49919	-0.9306	-0.00048555	-0.2054	-0.00010717	-1.136	-0.00059272	522.2586903669956	67.997	0.29402	65.336	65.139	65.433	-2.661					7	5	2	0	0	0	0.027462	1	5337	5337		37.812	15.852	1	9650	+		49158	24648	40772	40800	52865	52865					-0.01989769019155574
RLNGSRVR	8	Unmodified	_RLNGSRVR_					0	0	0			REV__Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|150|1|anti-sense	REV__Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|150|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	479.2866516113281	2	479.288674	956.562795	1.7631	0.00084502	-1.8615	-0.0008922	-0.098445	-4.7184E-05	479.2876787398958	28.181	0.755	25.471	25.294	26.049	-2.7097					33	15	3	0	0	0	0.71369	1	595	595		40.573	4.9543	1	110940	+		49159	28168	40773	40801	52866	52866					0.08277636208606509
RLNGSRVRH	9	Unmodified	_RLNGSRVRH_					0	0	0			REV__Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|150|1|anti-sense	REV__Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|150|1|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	547.8198852539062	2	547.81813	1093.62171	-0.98054	-0.00053716	2.4567	0.0013459	1.4762	0.00080869	547.8194506277371	66.002	0.94789	66.002	65.831	66.779	0					54	23	3	0	0	0	0.46356	1	6089	6089		45.972	8.1607	1	9987700	+		49160	28168	40774	40802	52867	52867					0.07864112502943499
RLNGTRLVSI	10	Unmodified	_RLNGTRLVSI_					0	0	0			REV__ENST00000598240.1_1_19:19105804-19136912:-|nuORF	REV__ENST00000598240.1_1_19:19105804-19136912:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	564.8458862304688	2	564.846022	1127.67749	-0.59936	-0.00033855	0.5766	0.00032569	-0.022758	-1.2855E-05	564.8460638997414	27.916	0.74852	27.916	27.641	28.39	0					39	14	4	0	0	0	0.55109	1	868	868		47.96	0	1	698960	+		49161	28008	40775	40803	52868	52868					0.11875900899894987
RLNHDIRYHKR	11	Unmodified	_RLNHDIRYHKR_					0	0	0			REV__ENST00000490931.1_1_1:11171595-11175545:-|nuORF	REV__ENST00000490931.1_1_1:11171595-11175545:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.71319580078125	3	503.28328	1506.82801	0.004129	2.0781E-06	0.28334	0.0001426	0.28747	0.00014468	503.6171719877323	57.116	0.13344	57.116	57.004	57.138	0					4	2	2	0	0	0	0.026383	1	4775	4775		12.957	7.5446	1	44482	+		49162	26664	40776	40804	52869	52869					0.09487060611377274
RLNKVISEL	9	Unmodified	_RLNKVISEL_					0	0	0		ENST00000524867.1_1_11:810234-811767:+|nuORF;ENSG00000177600|ENST00000321153|RPLP2	ENST00000524867.1_1_11:810234-811767:+|nuORF	ENST00000524867.1_1_11:810234-811767:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	536.3305053710938	2	536.329673	1070.64479	-0.080099	-4.296E-05	-0.010254	-5.4994E-06	-0.090353	-4.8459E-05	536.3295446430315	69.205	1.2305	69.205	68.9	70.13	0					69	29	4	0	0	0	0.045281	1	6566	6566		122.18	34.48	1	5298500			49163	7697	40777	40805	52870	52870					0.11229693777045213
RLNLDPPT	8	Unmodified	_RLNLDPPT_					0	0	0			REV__ENSG00000196227|ENST00000360816|FAM217B	REV__ENSG00000196227|ENST00000360816|FAM217B	MULTI-SECPEP	OvCa99_classI_Rep5	1	463.7797546386719	2	463.258717	924.50288	-0.30371	-0.00014069	-0.88573	-0.00041032	-1.1894	-0.00055102	463.25884726794186	35.374	0.69682	35.374	35.149	35.846	0					26	14	3	0	0	0	0.028476	1	1776	1776		24.203	0	1	19167	+		49164	22803	40778	40806	52871	52871					0.03760900754696195
RLNLGKLI	8	Unmodified	_RLNLGKLI_					0	0	0			REV__ENST00000477094.5_1_7:20686955-20691273:+|nuORF	REV__ENST00000477094.5_1_7:20686955-20691273:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	463.79827880859375	2	463.810919	925.607286	0.32778	0.00015203	-0.12746	-5.9119E-05	0.20032	9.291E-05	463.81142784268	70.908	0.86488	68.188	67.75	68.615	-2.7196					25	16	3	0	0	0	0.028476	1	3245	3245		33.516	0	1	56921	+		49165	15549	40779	40807	52872	52872					0.14150647302096786
RLNNIRVLL	9	Unmodified	_RLNNIRVLL_					0	0	0		ENSG00000185722|ENST00000341657|ANKFY1;nc|ENSG00000185722|Q9P2R3-2|ANKFY1;nc|ENSG00000185722|Q9P2R3-4|ANKFY1	ENSG00000185722|ENST00000341657|ANKFY1	ENSG00000185722|ENST00000341657|ANKFY1	MULTI-MSMS	OvCa99_classI_Rep5	1	555.8600463867188	2	555.858932	1109.70331	2.2035	0.0012248	-0.1021	-5.675E-05	2.1014	0.0011681	555.85878669238	85.438	0.98669	85.438	85.046	86.033	0					67	23	4	0	0	0	0.55588	1	8981	8981		37.159	4.3467	1	3900800			49166	8276	40780	40808	52873	52873					0.152847951422018
RLNPKALTL	9	Unmodified	_RLNPKALTL_					0	0	0		ENSG00000153406|ENST00000283429|NMRAL1	ENSG00000153406|ENST00000283429|NMRAL1	ENSG00000153406|ENST00000283429|NMRAL1	MULTI-MSMS	OvCa99_classI_Rep5	1	513.3285522460938	2	513.326934	1024.63931	0.093304	4.7896E-05	0.26878	0.00013797	0.36209	0.00018587	513.3268338002592	70.78	0.53954	70.78	70.528	71.068	0					36	13	4	0	0	0	0.083631	1	6797	6797		101.6	42.819	1	3454300			49167	5681	40781	40809	52874	52874					0.12798014985219197
RLNPLVLLL	9	Unmodified	_RLNPLVLLL_					0	0	0		ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	MULTI-MSMS	OvCa99_classI_Rep5	1	525.85693359375	2	525.855327	1049.6961	0.93824	0.00049338	0.95799	0.00050376	1.8962	0.00099714	525.855690526433	145.75	1.1323	145.75	145.39	146.52	0					59	22	4	0	0	0	0.53957	1	17047	17047		38.806	0	1	451860			49168	2403	40782	40810	52875	52875					0.17324062541752028
RLNPLVLLL	9	Unmodified	_RLNPLVLLL_					0	0	0		ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	ENSG00000104881|ENST00000360957|PPP1R13L	MULTI-MSMS	OvCa9_classI_Rep3	3	525.8555908203125	2	525.855327	1049.6961	0.33138	0.00017426	-0.66182	-0.00034802	-0.33044	-0.00017376	525.85482904703	128.29	1.7807	127.2	126.73	128.51	-1.0933					95	35	4	0	0	0	0.61208	2	10084	10084;10104		30.504	0	1	248690			49169	2403	40782	40810	52876;52877	52876					0.17324062541752028
RLNQGFVFA	9	Unmodified	_RLNQGFVFA_					0	0	0			REV__ENST00000587411.5_1_19:5925055-5932565:-|nuORF	REV__ENST00000587411.5_1_19:5925055-5932565:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.9439697265625	2	526.287808	1050.56106	0.70335	0.00037017	0.64969	0.00034193	1.353	0.00071209	526.7893086022513	85.712	0.39713	83.066	82.896	83.293	-2.6463					10	7	2	0	0	0	0.027462	1	7245	7245		30.504	3.7075	1	19869	+		49170	27874	40783	40811	52878	52878					0.03780582400008825
RLNRHFHD	8	Unmodified	_RLNRHFHD_					0	0	0		ENSG00000124702|ENST00000326974|KLHDC3	ENSG00000124702|ENST00000326974|KLHDC3	ENSG00000124702|ENST00000326974|KLHDC3	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.3295288085938	2	547.783756	1093.55296	-1.3225	-0.00072446	2.8825	0.001579	1.56	0.00085455	547.7852493192106	64.152	0.64995	64.152	63.894	64.544	0					30	15	2	0	0	0	0.028476	1	5806	5806		82.305	11.009	1	2604400			49171	3673	40784	40812	52879	52879					0.009924482032147353
RLNRRSSFT	9	Unmodified	_RLNRRSSFT_					0	0	0			REV__nc|ENSG00000188868|Q8TA94-2|ZNF563	REV__nc|ENSG00000188868|Q8TA94-2|ZNF563	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.8187866210938	2	568.817796	1135.62104	2.5095	0.0014274	-0.90798	-0.00051647	1.6015	0.00091096	569.3179487688835	80.312	0.46636	80.312	80.148	80.615	0					15	10	2	0	0	0	0.027462	1	8240	8240		35.618	11.099	1	171900	+		49172	22744	40785	40813	52880	52880					0.05865273063204768
RLNRRSSFT	9	Unmodified	_RLNRRSSFT_					0	0	0			REV__nc|ENSG00000188868|Q8TA94-2|ZNF563	REV__nc|ENSG00000188868|Q8TA94-2|ZNF563	MULTI-MATCH	OvCa9_classI_Rep2	2		2	568.817796	1135.62104	0.026963	1.5337E-05	-0.8926	-0.00050773	-0.86563	-0.00049239	568.8172542345728	81.769	0.36298	80.12	79.919	80.282	-1.6485	-0.036528	-0.00034322	NaN	35.618	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16119	+		49173	22744	40785	40813							0.05865273063204768
RLNRRSSFT	9	Unmodified	_RLNRRSSFT_					0	0	0			REV__nc|ENSG00000188868|Q8TA94-2|ZNF563	REV__nc|ENSG00000188868|Q8TA94-2|ZNF563	MULTI-MATCH	OvCa9_classI_Rep3	3		2	568.817796	1135.62104	-1.1223	-0.00063838	-0.5354	-0.00030455	-1.6577	-0.00094293	568.8175212162374	82.408	0.49774	80.111	79.785	80.283	-2.2963	-0.045077	6.3133E-05	NaN	35.618	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15406	+		49174	22744	40785	40813							0.05865273063204768
RLNRRSSFT	9	Unmodified	_RLNRRSSFT_					0	0	0			REV__nc|ENSG00000188868|Q8TA94-2|ZNF563	REV__nc|ENSG00000188868|Q8TA94-2|ZNF563	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	568.817796	1135.62104	-0.031608	-1.7979E-05	0.089599	5.0966E-05	0.057991	3.2986E-05	568.818010371296	82.765	0.29163	80.082	79.93	80.222	-2.683	-0.074171	0.00077416	NaN	35.618	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22521	+		49175	22744	40785	40813							0.05865273063204768
RLNSVSFASW	10	Unmodified	_RLNSVSFASW_					0	0	0		ENST00000448129.1_1_3:12920486-12926576:-|nuORF	ENST00000448129.1_1_3:12920486-12926576:-|nuORF	ENST00000448129.1_1_3:12920486-12926576:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8024291992188	2	583.80128	1165.58801	0.97841	0.0005712	1.9394	0.0011322	2.9178	0.0017034	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.65434	1	1423	1423		35.618	4.0885	1	155970			49176	12015	40786	40814	52881	52881					0.011836462205337739
RLNWLKIR	8	Unmodified	_RLNWLKIR_					0	0	0		nc|ENSG00000139734|Q9NSV4-2|DIAPH3;nc|ENSG00000139734|Q9NSV4-1|DIAPH3;nc|ENSG00000139734|Q9NSV4-7|DIAPH3;nc|ENSG00000139734|Q9NSV4-6|DIAPH3;nc|ENSG00000139734|Q9NSV4-5|DIAPH3;nc|ENSG00000139734|Q9NSV4-4|DIAPH3;ENSG00000139734|ENST00000400324|DIAPH3	nc|ENSG00000139734|Q9NSV4-2|DIAPH3	nc|ENSG00000139734|Q9NSV4-2|DIAPH3	MULTI-MSMS	OvCa99_classI_Rep5	1	549.8461303710938	2	549.848368	1097.68218	-0.89219	-0.00049057	-3.1528	-0.0017336	-4.045	-0.0022242	549.8465251421983	28.563	0.59753	28.563	28.39	28.987	0					32	11	4	0	0	0	0.61758	1	941	941		60.294	6.9425	1	537990			49177	4802	40787	40815	52882	52882					0.13724829833290642
RLNWPHMI	8	Unmodified	_RLNWPHMI_					0	0	0		nc|ENSG00000007174|Q9NYC9-2|DNAH9;DNAH9|p.H4399Qfs*22|1|0.04|ENSG00000007174|chr17:11962220-11962220|T/-|frameshift_variant;ENSG00000007174|ENST00000262442|DNAH9;DNAH9|p.R163Kfs*10|1|0.03|ENSG00000007174|chr17:11608197-11608198|-/A|frameshift_variant;DNAH9|p.R164Sfs*14|1|0.03|ENSG00000007174|chr17:11608199-11608200|-/ATCCTCAACTTTGCTT|frameshift_variant	nc|ENSG00000007174|Q9NYC9-2|DNAH9	nc|ENSG00000007174|Q9NYC9-2|DNAH9	MULTI-MSMS	OvCa99_classI_Rep5	1	533.7860717773438	2	533.784379	1065.5542	2.5924	0.0013838	-3.782	-0.0020188	-1.1896	-0.00063501	533.7823255057535	75.388	1.4299	75.388	75.209	76.639	0					83	35	4	0	0	0	0.60486	2	7603	7524;7603		62.978	5.1671	1	21263000			49178	749	40788	40816	52883;52884	52884					0.0240494624774783
RLNYKETI	8	Unmodified	_RLNYKETI_					0	0	0		tr|A0A553SNE3|A0A553SNE3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24300PE=4SV=1	tr|A0A553SNE3|A0A553SNE3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24300PE=4SV=1	tr|A0A553SNE3|A0A553SNE3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24300PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	518.7932739257812	2	518.792924	1035.57129	2.0376	0.0010571	-0.75219	-0.00039023	1.2854	0.00066685	518.7925074829448	106.35	1.5192	106.35	105.88	107.4	0					57	31	3	0	0	0	0.62934	1	11957	11957		57.811	6.4758	1	2384500			49179	33918	40789	40817	52885	52885					0.05493145334571636
RLPAAARTG	9	Unmodified	_RLPAAARTG_					0	0	0		KIAA2026|p.V108Rfs*104|1|0.31|ENSG00000183354|chr9:6007467-6007468|-/C|frameshift_variant	KIAA2026|p.V108Rfs*104|1|0.31|ENSG00000183354|chr9:6007467-6007468|-/C|frameshift_variant	KIAA2026|p.V108Rfs*104|1|0.31|ENSG00000183354|chr9:6007467-6007468|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	456.7720642089844	2	456.772326	911.530098	-0.55209	-0.00025218	0.40157	0.00018343	-0.15052	-6.8753E-05	456.77237766888294	142.31	1.8774	142.08	141.37	143.25	-0.22697					97	37	4	0	0	0	0.63422	1	14300	14300		27.882	0	1	225920			49180	14521	40790	40818	52886	52886					0.07079429085740685
RLPAALLLL	9	Unmodified	_RLPAALLLL_					0	0	0			REV__ENST00000603606.1_1_14:64061078-64061531:-|nuORF	REV__ENST00000603606.1_1_14:64061078-64061531:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.3373107910156	2	490.33677	978.658987	2.3125	0.0011339	-3.376	-0.0016554	-1.0635	-0.00052147	490.335203673426	137.13	5.8682	135.59	135.18	141.05	-1.5437					314	118	5	0	0	0	0.53957	1	13466	13466		38.806	6.8513	1	8417000	+		49181	28052	40791	40819	52887	52887					0.16880390996004735
RLPAKKSRQQ	10	Unmodified	_RLPAKKSRQQ_					0	0	0		ENSG00000120370|ENST00000367763|GORAB;nc|ENSG00000120370|Q5T7V8-2|GORAB	ENSG00000120370|ENST00000367763|GORAB	ENSG00000120370|ENST00000367763|GORAB	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3709716796875	2	606.370195	1210.72584	-3.12	-0.0018918	2.4648	0.0014946	-0.65516	-0.00039727	606.3716138370278	152.89	1.1168	151.46	150.94	152.06	-1.4351					53	25	3	0	0	0	0.79917	1	15127	15127		19.104	0.84144	1	47625			49182	3429	40792	40820	52888	52888					0.12890394539795125
RLPDGQVTE	9	Unmodified	_RLPDGQVTE_					0	0	0		ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	ENSG00000184232|ENST00000328965|OAF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.6769104003906	2	507.764363	1013.51417	-0.50862	-0.00025826	0.86601	0.00043973	0.3574	0.00018147	507.7645895914784	52.179	0.43665	52.179	51.953	52.39	0					14	9	2	0	0	0	0.027461	1	4102	4102		32.812	4.9302	1	219450			49183	8139	40793	40821	52889	52889					0.007956780581935163
RLPDIFEAQI	10	Unmodified	_RLPDIFEAQI_					0	0	0		ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729	ENSG00000135480|ENST00000331817|KRT7	ENSG00000135480|ENST00000331817|KRT7	MULTI-MSMS	OvCa99_classI_Rep5	1	601.3340454101562	2	601.332413	1200.65027	1.9533	0.0011746	-0.13599	-8.1773E-05	1.8173	0.0010928	601.3322359743928	126.56	1.0033	126.56	126.18	127.18	0					58	21	4	0	0	0	0.103	1	14624	14624		91.265	25.8	1	1444000		+	49184	646	40794	40822	52890	52890					0.057973725688498234
RLPDLIKEV	9	Unmodified	_RLPDLIKEV_					0	0	0		nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	nc|ENSG00000198380|Q06210-2|GFPT1	MULTI-MSMS	OvCa99_classI_Rep5	1	541.8327026367188	2	541.832049	1081.64954	1.8463	0.0010004	0.3324	0.00018011	2.1787	0.0011805	541.8320244702318	92.574	0.79472	92.574	92.216	93.011	0					49	18	4	0	0	0	0.16264	1	10022	10022		82.75	13.123	1	1790600			49185	8812	40795	40823	52891	52891					0.1119857791979939
RLPEIYIQL	9	Unmodified	_RLPEIYIQL_					0	0	0		ENSG00000103966|ENST00000220325|EHD4;EHD4|p.A361Rfs*7|1|0.08|ENSG00000103966|chr15:41909707-41909708|-/G|frameshift_variant	ENSG00000103966|ENST00000220325|EHD4	ENSG00000103966|ENST00000220325|EHD4	MULTI-MSMS	OvCa99_classI_Rep5	1	572.841552734375	2	572.839874	1143.66519	1.6526	0.00094665	0.26259	0.00015042	1.9151	0.0010971	572.8399822779188	126.26	1.2393	126.26	125.95	127.18	0					77	26	5	0	0	0	0.060996	2	14612	14588;14612		112.41	32.698	1	3668000			49186	2345	40796	40824	52892;52893	52893					0.09910864436847078
RLPEPLPSW	9	Unmodified	_RLPEPLPSW_					0	0	0		ENSG00000139263|ENST00000320743|LRIG3;ENST00000548968.1_1_12:59307761-59313848:-|nuORF	ENSG00000139263|ENST00000320743|LRIG3	ENSG00000139263|ENST00000320743|LRIG3	MULTI-MSMS	OvCa99_classI_Rep5	1	547.8042602539062	2	547.803291	1093.59203	1.9539	0.0010703	-0.018027	-9.8751E-06	1.9358	0.0010605	547.8030622535058	110.75	1.1109	110.75	110.13	111.24	0					57	24	4	0	0	0	0.22035	1	12566	12566		72.879	23.438	1	1800000			49187	4759	40797	40825	52894	52894					0.04897735714234841
RLPERKKL	8	Unmodified	_RLPERKKL_					0	0	0			REV__ENSG00000099821|ENST00000588649|POLRMT	REV__ENSG00000099821|ENST00000588649|POLRMT	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.3394165039062	2	520.340375	1038.6662	-0.78006	-0.0004059	0.73752	0.00038376	-0.042543	-2.2137E-05	520.3404101251207	39.944	1.9528	36.99	36.616	38.569	-2.9541					93	37	5	0	0	0	0.68714	1	1681	1681		45.952	7.1458	1	1048100	+		49188	17336	40798	40826	52895	52895					0.14841123596397665
RLPETLPSL	9	Unmodified	_RLPETLPSL_					0	0	0		nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;ENST00000540037.5_2_12:6464995-6472854:-|nuORF	nc|ENSG00000111319|P37088-4|SCNN1A	nc|ENSG00000111319|P37088-4|SCNN1A	MULTI-MSMS	OvCa99_classI_Rep5	1	513.30419921875	2	513.303124	1024.5917	2.3078	0.0011846	-0.34055	-0.00017481	1.9673	0.0010098	513.3028835147137	102.25	2.2361	102.25	101.23	103.47	0					135	52	5	0	0	0	0.074342	2	11393	11370;11393		104.75	22.216	1	13218000			49189	2820	40799	40827	52896;52897	52897					0.0803831599437217
RLPETLPSL	9	Unmodified	_RLPETLPSL_					0	0	0		nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;ENST00000540037.5_2_12:6464995-6472854:-|nuORF	nc|ENSG00000111319|P37088-4|SCNN1A	nc|ENSG00000111319|P37088-4|SCNN1A	MULTI-MSMS	OvCa9_classI_Rep2	2	513.3031005859375	2	513.303124	1024.5917	-0.90798	-0.00046607	0.2818	0.00014465	-0.62618	-0.00032142	513.303241645798	102.61	2.5703	101.93	101.49	104.06	-0.68459					128	51	4	0	0	0	0.11471	7	9453	9430;9435;9441;9447;9453;9459;9486		93.195	18.033	1	1179700			49190	2820	40799	40827	52898;52899;52900;52901;52902;52903;52904	52902					0.0803831599437217
RLPETLPSL	9	Unmodified	_RLPETLPSL_					0	0	0		nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;ENST00000540037.5_2_12:6464995-6472854:-|nuORF	nc|ENSG00000111319|P37088-4|SCNN1A	nc|ENSG00000111319|P37088-4|SCNN1A	MULTI-MSMS	OvCa9_classI_Rep3	3	513.3023681640625	2	513.303124	1024.5917	0.34771	0.00017848	-0.97448	-0.0005002	-0.62677	-0.00032172	513.302615826109	103.47	2.7157	102.04	101.29	104.01	-1.4347					126	51	4	0	0	0	0.12515	7	7176	7147;7152;7163;7169;7176;7182;7194		90.37	28.262	1	1368900			49191	2820	40799	40827	52905;52906;52907;52908;52909;52910;52911	52909					0.0803831599437217
RLPETLPSL	9	Unmodified	_RLPETLPSL_					0	0	0		nc|ENSG00000111319|P37088-4|SCNN1A;ENSG00000111319|ENST00000228916|SCNN1A;nc|ENSG00000111319|P37088-5|SCNN1A;nc|ENSG00000111319|P37088-6|SCNN1A;nc|ENSG00000111319|P37088-2|SCNN1A;ENST00000540037.5_2_12:6464995-6472854:-|nuORF	nc|ENSG00000111319|P37088-4|SCNN1A	nc|ENSG00000111319|P37088-4|SCNN1A	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.3027954101562	2	513.303124	1024.5917	-0.6359	-0.00032641	0.10313	5.2935E-05	-0.53277	-0.00027347	513.3031570189453	104.08	2.9198	101.97	101.54	104.46	-2.1192					129	56	4	0	0	0	0.13504	4	9404	9404;9416;9430;9442		87.696	17.605	1	1348000			49192	2820	40799	40827	52912;52913;52914;52915	52912					0.0803831599437217
RLPFIPRQR	9	Unmodified	_RLPFIPRQR_					0	0	0		ENST00000566525.5_1_16:770611-770875:+|nuORF	ENST00000566525.5_1_16:770611-770875:+|nuORF	ENST00000566525.5_1_16:770611-770875:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	591.8646240234375	2	591.864549	1181.71454	0.72408	0.00042856	-0.48902	-0.00028943	0.23506	0.00013913	591.8641978183085	65.182	2.2339	62.236	61.844	64.078	-2.9459					105	43	4	0	0	0	0.56889	1	2636	2636		35.618	6.4687	1	184170			49193	13846	40800	40828	52916	52916					0.13095617236285761
RLPFNLRQI	9	Unmodified	_RLPFNLRQI_					0	0	0		ENST00000464116.2_1_22:42018008-42024264:+|nuORF	ENST00000464116.2_1_22:42018008-42024264:+|nuORF	ENST00000464116.2_1_22:42018008-42024264:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	578.8171997070312	2	578.851107	1155.68766	-1.4619	-0.00084624	1.8911	0.0010947	0.42917	0.00024843	579.3539819327115	53.551	0.96711	50.343	49.795	50.762	-3.208					36	18	4	0	0	0	0.027462	1	3275	3275		25.45	22.04	1	31907			49194	12240	40801	40829	52917	52917					0.11604508625100607
RLPGEAQKI	9	Unmodified	_RLPGEAQKI_					0	0	0		ENSG00000066777|ENST00000262215|ARFGEF1;ENSG00000124198|ENST00000371917|ARFGEF2;ENST00000466543.1_1_7:6210722-6211705:-|nuORF;ENST00000478541.1_1_7:6210722-6217545:-|nuORF;ENSG00000008256|ENST00000350796|CYTH3;nc|ENSG00000008256|O43739|CYTH3;ENST00000591574.5_1_17:76677122-76698292:-|nuORF;ENST00000462927.5_1_22:37678610-37705275:+|nuORF;nc|ENSG00000108669|Q15438-3|CYTH1;ENSG00000100055|ENST00000248901|CYTH4;nc|ENSG00000108669|Q15438-2|CYTH1;ENSG00000108669|ENST00000446868|CYTH1;ENSG00000105443|ENST00000452733|CYTH2;nc|ENSG00000105443|Q99418|CYTH2	ENSG00000066777|ENST00000262215|ARFGEF1;ENST00000591574.5_1_17:76677122-76698292:-|nuORF	ENSG00000066777|ENST00000262215|ARFGEF1	MULTI-MSMS	OvCa99_classI_Rep5	1	506.30120849609375	2	506.300916	1010.58728	-0.3322	-0.00016819	-0.36602	-0.00018532	-0.69822	-0.00035351	506.3007450895206	47.746	1.8648	47.746	47.465	49.33	0					95	42	5	0	0	0	0.055627	1	3449	3449		115.49	25.124	1	13165000			49195	1359;2001	40802	40830	52918	52918					0.08240851571463281
RLPGLKRS	8	Unmodified	_RLPGLKRS_					0	0	0		ENST00000405486.5_2_22:41680949-41681714:-|nuORF	ENST00000405486.5_2_22:41680949-41681714:-|nuORF	ENST00000405486.5_2_22:41680949-41681714:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	463.7984313964844	2	463.798343	925.582134	0.29403	0.00013637	-0.86487	-0.00040112	-0.57084	-0.00026475	463.7979721487958	70.79	6.0908	68.07	67.699	73.79	-2.7196					279	121	5	0	0	0	0.74266	1	3323	3323		30.318	3.5216	1	3593600			49196	11465	40803	40831	52919	52919					0.11636592499519338
RLPGLTLGSR	10	Unmodified	_RLPGLTLGSR_					0	0	0		ENST00000404054.3_1_4:1742187-1742346:+|nuORF	ENST00000404054.3_1_4:1742187-1742346:+|nuORF	ENST00000404054.3_1_4:1742187-1742346:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	535.327392578125	2	535.327465	1068.64038	-1.2502	-0.00066929	0.80875	0.00043294	-0.4415	-0.00023635	535.3279070397938	59.315	2.607	56.535	55.888	58.495	-2.7801					134	49	4	0	0	0	0.65849	1	4349	4349		35.152	0.97948	1	990330			49197	11447	40804	40832	52920	52920					0.10880229354143012
RLPGWQSEL	9	Unmodified	_RLPGWQSEL_					0	0	0		ENST00000356208.9_1_20:55983752-55984013:+|nuORF	ENST00000356208.9_1_20:55983752-55984013:+|nuORF	ENST00000356208.9_1_20:55983752-55984013:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.2929077148438	2	543.290548	1084.56654	-1.0463	-0.00056842	3.4563	0.0018778	2.4101	0.0013094	543.2922433410479	82.634	1.4624	79.951	79.346	80.808	-2.6829					59	29	3	0	0	0	0.33652	1	6833	6833		58.782	2.0609	1	563070			49198	10693	40805	40833	52921	52921					0.027642611918054172
RLPHLQPRVPG	11	Unmodified	_RLPHLQPRVPG_					0	0	0		ENST00000530238.5_1_11:66105966-66109705:-|nuORF	ENST00000530238.5_1_11:66105966-66109705:-|nuORF	ENST00000530238.5_1_11:66105966-66109705:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	423.92144775390625	3	423.922801	1268.74657	0.4048	0.00017161	-3.5984	-0.0015254	-3.1936	-0.0013538	423.92128381620927	43.861	1.6901	41.151	40.857	42.547	-2.7097					105	33	5	0	0	0	0.69735	1	2497	2497		30.569	3.8192	1	640520			49199	13286	40806	40834	52922	52922					0.1229498491945833
RLPKARFI	8	Unmodified	_RLPKARFI_					0	0	0		ENSG00000121361|ENST00000240662|KCNJ8	ENSG00000121361|ENST00000240662|KCNJ8	ENSG00000121361|ENST00000240662|KCNJ8	MULTI-MSMS	OvCa9_classI_Rep2	2	500.82470703125	2	500.824361	999.634169	-1.7989	-0.00090096	0.9357	0.00046862	-0.86325	-0.00043234	500.8247449295919	61.278	4.4126	58.518	58.094	62.506	-2.7593					209	84	4	0	0	0	0.60486	3	4529	4529;4540;4600		62.978	7.5501	1	946070			49200	3480	40807	40835	52923;52924;52925	52923					0.13433755913251844
RLPKARFI	8	Unmodified	_RLPKARFI_					0	0	0		ENSG00000121361|ENST00000240662|KCNJ8	ENSG00000121361|ENST00000240662|KCNJ8	ENSG00000121361|ENST00000240662|KCNJ8	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.8249206542969	2	500.824361	999.634169	-0.70231	-0.00035174	0.048171	2.4125E-05	-0.65414	-0.00032761	500.82426175027206	62.48	3.824	59.023	58.382	62.206	-3.4577					194	78	4	0	0	0	0.61758	1	4358	4358		60.294	1.512	1	1001200			49201	3480	40807	40835	52926	52926					0.13433755913251844
RLPKVVNIL	9	Unmodified	_RLPKVVNIL_					0	0	0			REV__ENSG00000165661|ENST00000358701|QSOX2	REV__ENSG00000165661|ENST00000358701|QSOX2	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.7967529296875	2	526.352951	1050.69135	1.9695	0.0010367	-0.71815	-0.000378	1.2514	0.00065867	526.352648713369	82.398	0.43036	82.398	82.264	82.694	0					17	9	2	0	0	0	0.027462	1	8527	8527		16.473	0	1	143240	+		49202	21106	40808	40836	52927	52927					0.168031783989818
RLPLKPARS	9	Unmodified	_RLPLKPARS_					0	0	0			REV__ENST00000314641.9_1_6:105581396-105585043:-|nuORF	REV__ENST00000314641.9_1_6:105581396-105585043:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	519.3326416015625	2	519.33255	1036.65055	0.43803	0.00022748	-1.2797	-0.0006646	-0.84169	-0.00043712	519.3319823191914	72.351	2.5617	69.844	69.226	71.788	-2.5071					171	48	5	0	0	0	0.50149	1	5854	5854		42.396	9.5837	1	1130700	+		49203	24384	40809	40837	52928	52928					0.13368837079360674
RLPLKPARS	9	Unmodified	_RLPLKPARS_					0	0	0			REV__ENST00000314641.9_1_6:105581396-105585043:-|nuORF	REV__ENST00000314641.9_1_6:105581396-105585043:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	519.3328857421875	2	519.33255	1036.65055	0.36573	0.00018993	-1.1243	-0.00058388	-0.75855	-0.00039394	519.332039905815	72.479	2.9684	69.876	69.23	72.198	-2.6023					206	57	5	0	0	0	0.46356	2	3470	3455;3470		45.972	3.6689	1	2143000	+		49204	24384	40809	40837	52929;52930	52930					0.13368837079360674
RLPLRISK	8	Unmodified	_RLPLRISK_					0	0	0		ENST00000513154.5_1_5:114499382-114505363:-|nuORF	ENST00000513154.5_1_5:114499382-114505363:-|nuORF	ENST00000513154.5_1_5:114499382-114505363:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.77862548828125	2	491.829643	981.644734	-0.13655	-6.7158E-05	-0.15477	-7.6123E-05	-0.29132	-0.00014328	491.8293542456342	52.895	0.47554	52.895	52.697	53.172	0					17	10	2	0	0	0	0.028476	1	4200	4200		33.516	9.3128	1	411280			49205	13008	40810	40838	52931	52931					0.1531773856770542
RLPLRLFLI	9	Unmodified	_RLPLRLFLI_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	OvCa99_classI_Rep5	1	571.3854370117188	2	570.884419	1139.75428	1.5707	0.0008967	-2.0435	-0.0011666	-0.47282	-0.00026993	571.3835704795658	126.88	2.236	126.88	126.46	128.7	0					102	48	3	0	0	0	0.36502	1	14688	14688		55.504	2.5675	1	1137500			49206	1958	40811	40839	52932	52932					0.1899974418702186
RLPLVLKTL	9	Unmodified	_RLPLVLKTL_					0	0	0		ENSG00000179832|ENST00000326134|MROH1;ENST00000536221.1_8:145474248-145485625:+|nuORF;nc|ENSG00000179832|Q8NDA8-3|MROH1	ENSG00000179832|ENST00000326134|MROH1	ENSG00000179832|ENST00000326134|MROH1	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.2921142578125	2	526.863152	1051.71175	-1.4763	-0.00077781	0.62405	0.00032879	-0.85226	-0.00044902	526.8635948985491	100.98	0.56204	99.37	99.094	99.656	-1.6053					17	10	2	0	0	0	0.027462	1	6907	6907		6.7355	0	1	17991			49207	7843	40812	40840	52933	52933					0.18796349058811757
RLPLVVSFI	9	Unmodified	_RLPLVVSFI_					0	0	0		nc|ENSG00000109270|Q9UHA4-2|LAMTOR3;ENSG00000109270|ENST00000499666|LAMTOR3	nc|ENSG00000109270|Q9UHA4-2|LAMTOR3	nc|ENSG00000109270|Q9UHA4-2|LAMTOR3	MULTI-MSMS	OvCa99_classI_Rep5	1	522.3351440429688	2	522.334227	1042.6539	0.89874	0.00046944	1.353	0.00070671	2.2517	0.0011762	522.3348099847174	138.63	1.0126	138.63	138.26	139.27	0					47	20	3	0	0	0	0.42676	1	16159	16159		49.442	8.6634	1	402470			49208	2706	40813	40841	52934	52934					0.13428087133388544
RLPNLIRGL	9	Unmodified	_RLPNLIRGL_					0	0	0			REV__ENSG00000137460|ENST00000511601|FHDC1	REV__ENSG00000137460|ENST00000511601|FHDC1	MULTI-MSMS	OvCa9_classI_Rep2	2	526.3402099609375	2	526.340375	1050.6662	-0.81474	-0.00042883	-0.34465	-0.0001814	-1.1594	-0.00061023	526.3400987047603	85.909	2.9151	84.418	84.047	86.963	-1.4906					140	57	5	0	0	0	0.21395	1	7470	7470		73.975	29.858	1	922440	+		49209	19452	40814	40842	52935	52935					0.1428912359642709
RLPNLIRGL	9	Unmodified	_RLPNLIRGL_					0	0	0			REV__ENSG00000137460|ENST00000511601|FHDC1	REV__ENSG00000137460|ENST00000511601|FHDC1	MULTI-MSMS	OvCa9_classI_Rep3	3	526.3416137695312	2	526.340375	1050.6662	-1.4823	-0.0007802	0.81918	0.00043117	-0.66314	-0.00034904	526.340747965252	87.086	2.9631	84.91	84.431	87.394	-2.1768					160	58	4	0	0	0	0.46377	2	5209	5209;5252		45.952	1.8352	1	1191300	+		49210	19452	40814	40842	52936;52937	52936					0.1428912359642709
RLPNLIRGL	9	Unmodified	_RLPNLIRGL_					0	0	0			REV__ENSG00000137460|ENST00000511601|FHDC1	REV__ENSG00000137460|ENST00000511601|FHDC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.3414306640625	2	526.340375	1050.6662	-2.1284	-0.0011203	0.71634	0.00037704	-1.4121	-0.00074324	526.3406344905085	87.536	2.6472	84.909	84.549	87.196	-2.6269					140	52	5	0	0	0	0.31747	2	7465	7430;7465		60.972	10.947	1	1013500	+		49211	19452	40814	40842	52938;52939	52939					0.1428912359642709
RLPPGLFSLL	10	Unmodified	_RLPPGLFSLL_					0	0	0		ENST00000550184.5_1_12:56552598-56552682:+|nuORF	ENST00000550184.5_1_12:56552598-56552682:+|nuORF	ENST00000550184.5_1_12:56552598-56552682:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	556.2858276367188	2	556.844959	1111.67537	1.8185	0.0010126	4.242	0.0023621	6.0605	0.0033747	556.8470885070584	29.515	0.33484	26.806	26.682	27.017	-2.7097					10	6	2	0	0	0	0.027284	1	739	739		20.947	2.6225	1	12463			49212	13581	40815	40843	52940	52940					0.12399472162087477
RLPPPFPGL	9	Unmodified	_RLPPPFPGL_					0	0	0		SNX1|p.D398Afs*8|1|0.33|ENSG00000028528|chr15:64131864-64131864|A/-|frameshift_variant;nc|ENSG00000028528|Q13596-2|SNX1;ENSG00000028528|ENST00000559844|SNX1;nc|ENSG00000028528|Q13596-3|SNX1	SNX1|p.D398Afs*8|1|0.33|ENSG00000028528|chr15:64131864-64131864|A/-|frameshift_variant	SNX1|p.D398Afs*8|1|0.33|ENSG00000028528|chr15:64131864-64131864|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	497.2986145019531	2	497.297645	992.580737	1.3152	0.00065406	1.8037	0.00089696	3.1189	0.001551	497.29749277632783	113.7	1.8702	113.7	113.15	115.02	0					76	42	3	0	0	0	0.34496	2	13014	12959;13014		57.811	14.824	1	279720			49213	1060	40816	40844	52941;52942	52942					0.08414958410764939
RLPPWRVR	8	Unmodified	_RLPPWRVR_					0	0	0			REV__ENST00000485102.1_1_X:48673225-48673405:+|nuORF	REV__ENST00000485102.1_1_X:48673225-48673405:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3304443359375	2	540.332885	1078.65122	-7.0849	-0.0038282	2.0069	0.0010844	-5.078	-0.0027438	540.3339144529704	160.11	0.74295	158.5	158.24	158.98	-1.6101					38	17	3	0	0	0	0.75661	1	15799	15799		19.36	1.995	1	51162	+		49214	26558	40817	40845	52943	52943					0.11503676519077999
RLPRKLGVT	9	Unmodified	_RLPRKLGVT_					0	0	0			REV__chr8:144276304-144289101|94|35.55|0.18|7.6|-|1|BOP1,None|1	REV__chr8:144276304-144289101|94|35.55|0.18|7.6|-|1|BOP1,None|1	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3399047851562	2	520.340375	1038.6662	-0.11114	-5.783E-05	-0.1677	-8.7261E-05	-0.27884	-0.00014509	520.3401542748645	39.812	1.4362	37.102	36.805	38.241	-2.7097					67	28	4	0	0	0	0.69403	1	1959	1959		19.997	0.89325	1	306910	+		49215	16112	40818	40846	52944	52944					0.14841123596397665
RLPRKTPG	8	Unmodified	_RLPRKTPG_					0	0	0		ENST00000396081.5_1_7:35734394-35734541:-|nuORF;ENST00000311350.7_1_7:35734065-35734541:-|nuORF	ENST00000396081.5_1_7:35734394-35734541:-|nuORF	ENST00000396081.5_1_7:35734394-35734541:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.79046630859375	2	462.790518	923.566484	0.27277	0.00012624	-0.18065	-8.3604E-05	0.092117	4.2631E-05	462.7903124837854	33.565	1.4882	30.777	30.259	31.747	-2.7881					68	29	3	0	0	0	0.72896	1	873	873		37.159	0	1	162630			49216	10297	40819	40847	52945	52945					0.10164305982470978
RLPRSTID	8	Unmodified	_RLPRSTID_					0	0	0			REV__ENST00000469825.1_1_3:169621639-169621999:-|nuORF	REV__ENST00000469825.1_1_3:169621639-169621999:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.2825622558594	2	479.277441	956.540328	-4.3116	-0.0020664	3.7088	0.0017775	-0.60282	-0.00028892	479.27890529723703	154.84	0.50069	153.36	153.13	153.63	-1.4788					21	11	3	0	0	0	0.745	1	15331	15331		29.15	3.6994	1	16116	+		49217	26251	40820	40848	52946	52946					0.06031992020314192
RLPRSTID	8	Unmodified	_RLPRSTID_					0	0	0			REV__ENST00000469825.1_1_3:169621639-169621999:-|nuORF	REV__ENST00000469825.1_1_3:169621639-169621999:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	479.277441	956.540328	-5.0863	-0.0024377	5.1656	0.0024757	0.079298	3.8006E-05	479.27956872178004	154.36	0.687	153.35	153.12	153.81	-1.0076	-0.0053232	0.00065502	NaN	29.15	21	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26160	+		49218	26251	40820	40848							0.06031992020314192
RLPRSTID	8	Unmodified	_RLPRSTID_					0	0	0			REV__ENST00000469825.1_1_3:169621639-169621999:-|nuORF	REV__ENST00000469825.1_1_3:169621639-169621999:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	479.277441	956.540328	-4.3116	-0.0020664	3.7088	0.0017775	-0.60282	-0.00028892	479.27890529723703	154.84	0.50069	153.36	153.13	153.63	-1.4788	0.0053232	-0.00074143	NaN	29.15	21	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16116	+		49219	26251	40820	40848							0.06031992020314192
RLPSLALLL	9	Unmodified	_RLPSLALLL_					0	0	0		ECT2|p.V603L|1|0.05|ENSG00000114346|chr3:172784785-172784785|G/C|missense_variant	ECT2|p.V603L|1|0.05|ENSG00000114346|chr3:172784785-172784785|G/C|missense_variant	ECT2|p.V603L|1|0.05|ENSG00000114346|chr3:172784785-172784785|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3332824707031	2	498.334227	994.653902	-1.8174	-0.00090567	1.0953	0.00054583	-0.72208	-0.00035984	498.334772441205	125.12	4.2738	123.72	123.39	127.66	-1.3908					210	84	5	0	0	0	0.61365	1	11988	11988		30.318	2.0634	1	4129000			49220	779	40821	40849	52947	52947					0.15636087133361798
RLPSLILLY	9	Unmodified	_RLPSLILLY_					0	0	0			REV__ENSG00000158748|ENST00000289753|HTR6	REV__ENSG00000158748|ENST00000289753|HTR6	MULTI-MSMS	OvCa9_classI_Rep2	2	544.347412109375	2	544.347335	1086.68012	0.74405	0.00040502	-0.74307	-0.00040449	0.00098399	5.3563E-07	544.346788814307	129.27	1.1853	129.05	128.77	129.96	-0.22696					60	23	4	0	0	0	0.44568	4	12684	12684;12706;12719;12726		47.657	5.2612	1	195480	+		49221	20581	40822	40850	52948;52949;52950;52951	52948					0.1402435630486707
RLPSLILLY	9	Unmodified	_RLPSLILLY_					0	0	0			REV__ENSG00000158748|ENST00000289753|HTR6	REV__ENSG00000158748|ENST00000289753|HTR6	MULTI-MSMS	OvCa9_classI_Rep3	3	544.3465576171875	2	544.347335	1086.68012	0.25522	0.00013893	-0.24647	-0.00013416	0.0087488	4.7624E-06	544.3470145971799	130.64	2.2153	129.51	128.62	130.84	-1.1249					69	44	3	0	0	0	0.53483	4	10373	10363;10373;10380;10404		39.253	5.0803	1	117100	+		49222	20581	40822	40850	52952;52953;52954;52955	52953					0.1402435630486707
RLPTVLLKL	9	Unmodified	_RLPTVLLKL_					0	0	0		ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	MSMS	OvCa99_classI_Rep5	1	526.8639526367188	2	526.863152	1051.71175	NaN	NaN	NaN	NaN	NaN	NaN	NaN	103.88	1	103.88	103.38	104.38	0								0	0	0	0.12679	1	11626	11626		67.494	7.3754	1				49223	7723	40823	40851	52956	52956					0.1879634905878902
RLPTVLSWPFG	11	Unmodified	_RLPTVLSWPFG_					0	0	0		ENSG00000004478.8,FKBP4,chr12,+,I1.1,2795245,2795656|121|17.11|3|intron;ENSG00000004478.8,FKBP4,chr12,+,I1.1,2795245,2795656|121|17.11|1|intron;ENSG00000004478.8,FKBP4,chr12,+,I1.1,2795245,2795656|121|17.11|2|intron	ENSG00000004478.8,FKBP4,chr12,+,I1.1,2795245,2795656|121|17.11|3|intron	ENSG00000004478.8,FKBP4,chr12,+,I1.1,2795245,2795656|121|17.11|3|intron	MULTI-MSMS	OvCa9_classI_Rep3	3	424.9107666015625	3	424.908157	1271.70264	1.7676	0.00075109	3.7199	0.0015806	5.4875	0.0023317	424.90976624626023	65.471	1.3717	62.526	62.148	63.519	-2.9459					98	26	5	0	0	0	0.68709	2	2633	2633;2682		34.087	1.336	1	905110			49224	828	40824	40852	52957;52958	52957					0.07765955702438987
RLPVPTVRVCV	11	Unmodified	_RLPVPTVRVCV_					0	0	0			REV__ENST00000220592.9_2_8:141536826-141536982:-|nuORF	REV__ENST00000220592.9_2_8:141536826-141536982:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8687133789062	2	619.873725	1237.7329	-3.8587	-0.0023919	-3.029	-0.0018776	-6.8877	-0.0042695	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.71191	1	15300	15300		25.574	0	1	492670	+		49225	23743	40825	40853	52959	52959					0.12353991095983474
RLPVPTVRVCV	11	Unmodified	_RLPVPTVRVCV_					0	0	0			REV__ENST00000220592.9_2_8:141536826-141536982:-|nuORF	REV__ENST00000220592.9_2_8:141536826-141536982:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8688354492188	2	619.873725	1237.7329	-3.6059	-0.0022352	-3.3723	-0.0020904	-6.9782	-0.0043256	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.70865	1	12973	12973		26.693	4.1133	1	664560	+		49226	23743	40825	40853	52960	52960					0.12353991095983474
RLPVRISLQ	9	Unmodified	_RLPVRISLQ_					0	0	0			REV__CCSER2|p.A763Efs*315|1|0.03|ENSG00000107771|chr10:84477626-84477627|-/AA|frameshift_variant	REV__CCSER2|p.A763Efs*315|1|0.03|ENSG00000107771|chr10:84477626-84477627|-/AA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2938842773438	2	541.345658	1080.67676	1.3111	0.00070977	2.9513	0.0015977	4.2624	0.0023074	541.3479265838096	98.351	0.55805	98.351	98.206	98.764	0					19	12	3	0	0	0	0.027462	1	10840	10840		27.882	12.24	1	482030	+		49227	15758	40826	40854	52961	52961					0.139651062508392
RLQATEVRI	9	Unmodified	_RLQATEVRI_					0	0	0		nc|ENSG00000173113|Q9UI30-2|TRMT112;ENSG00000173113|ENST00000544844|TRMT112	nc|ENSG00000173113|Q9UI30-2|TRMT112	nc|ENSG00000173113|Q9UI30-2|TRMT112	MULTI-MSMS	OvCa9_classI_Rep2	2	543.3226318359375	2	543.324922	1084.63529	0.054576	2.9652E-05	-0.27875	-0.00015145	-0.22418	-0.0001218	543.3247413975346	64.933	1.7204	62.208	61.917	63.637	-2.7245					94	33	5	0	0	0	0.37135	1	5017	5017		54.776	0	1	1066900			49228	7348	40827	40855	52962	52962					0.09635925491488706
RLQCARGF	8	Unmodified	_RLQCARGF_					0	0	0		ENSG00000123358|ENST00000394825|NR4A1;nc|ENSG00000123358|P22736-2|NR4A1	ENSG00000123358|ENST00000394825|NR4A1	ENSG00000123358|ENST00000394825|NR4A1	MULTI-MSMS	OvCa99_classI_Rep5	1	475.7547302246094	2	475.753079	949.491604	-0.39578	-0.00018829	3.8839	0.0018478	3.4881	0.0016595	475.75464276877705	24.628	1.9572	24.628	23.886	25.843	0					45	38	3	0	0	0	0.7043	1	494	494		42.474	5.3154	1	53103			49229	3591	40828	40856	52963	52963					0.01483800179573791
RLQEAEEKR	9	Unmodified	_RLQEAEEKR_					0	0	0			REV__nc|ENSG00000149503|Q9NQS7-2|INCENP	REV__nc|ENSG00000149503|Q9NQS7-2|INCENP	MULTI-MSMS	OvCa99_classI_Rep5	1	579.8150024414062	2	579.814919	1157.61528	-1.2473	-0.00072319	1.5204	0.00088152	0.27307	0.00015833	579.8154070516305	26.937	0.34998	26.937	26.792	27.142	0					13	6	4	0	0	0	0.55011	1	751	751		37.812	2.6595	1	70655	+		49230	20167	40829	40857	52964	52964					0.04278129760882621
RLQEAEEKR	9	Unmodified	_RLQEAEEKR_					0	0	0			REV__nc|ENSG00000149503|Q9NQS7-2|INCENP	REV__nc|ENSG00000149503|Q9NQS7-2|INCENP	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	579.814919	1157.61528	-1.2473	-0.00072319	1.5204	0.00088152	0.27307	0.00015833	579.8154070516305	26.937	0.34998	26.937	26.792	27.142	0	0	0	NaN	37.812	13	6	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70655	+		49231	20167	40829	40857							0.04278129760882621
RLQEDPPAGV	10	Unmodified	_RLQEDPPAGV_					0	0	0		nc|ENSG00000077721|P49459-2|UBE2A;ENSG00000077721|ENST00000371558|UBE2A	nc|ENSG00000077721|P49459-2|UBE2A	nc|ENSG00000077721|P49459-2|UBE2A	MULTI-MSMS	OvCa99_classI_Rep5	1	541.2872924804688	2	541.285463	1080.55637	-0.49669	-0.00026885	-0.011405	-6.1736E-06	-0.5081	-0.00027502	541.2854307062249	61.352	0.63227	61.352	61.071	61.704	0					37	14	3	0	0	0	0.55109	1	5392	5392		47.96	3.5823	1	8914800			49232	1578	40830	40858	52965	52965					0.01931653466544958
RLQEDPPAGV	10	Unmodified	_RLQEDPPAGV_					0	0	0		nc|ENSG00000077721|P49459-2|UBE2A;ENSG00000077721|ENST00000371558|UBE2A	nc|ENSG00000077721|P49459-2|UBE2A	nc|ENSG00000077721|P49459-2|UBE2A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	541.285463	1080.55637	-1.6029	-0.00086762	1.827	0.00098895	0.22416	0.00012134	541.2863894654405	63.786	0.8391	61.042	60.739	61.579	-2.7444	-0.083639	0.0012483	NaN	47.96	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74267			49233	1578	40830	40858							0.01931653466544958
RLQEDPPAGV	10	Unmodified	_RLQEDPPAGV_					0	0	0		nc|ENSG00000077721|P49459-2|UBE2A;ENSG00000077721|ENST00000371558|UBE2A	nc|ENSG00000077721|P49459-2|UBE2A	nc|ENSG00000077721|P49459-2|UBE2A	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	541.285463	1080.55637	-0.38761	-0.00020981	0.44235	0.00023944	0.05474	2.963E-05	541.2856819830058	64.458	0.92392	60.983	60.686	61.61	-3.475	-0.14307	-0.00025076	NaN	47.96	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	461700			49234	1578	40830	40858							0.01931653466544958
RLQEDPPVGV	10	Unmodified	_RLQEDPPVGV_					0	0	0		ENST00000511807.1_1_5:133707262-133710155:+|nuORF;ENSG00000119048|ENST00000265339|UBE2B	ENST00000511807.1_1_5:133707262-133710155:+|nuORF	ENST00000511807.1_1_5:133707262-133710155:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	555.302490234375	2	555.301113	1108.58767	0.68199	0.00037871	-1.1006	-0.00061119	-0.41866	-0.00023248	555.3005003374233	72.144	1.0064	72.144	71.835	72.842	0					74	24	5	0	0	0	0.32141	2	7024	6995;7024		78.264	21.632	1	18168000			49235	3340	40831	40859	52966;52967	52967					0.037722265006550515
RLQEDPPVGV	10	Unmodified	_RLQEDPPVGV_					0	0	0		ENST00000511807.1_1_5:133707262-133710155:+|nuORF;ENSG00000119048|ENST00000265339|UBE2B	ENST00000511807.1_1_5:133707262-133710155:+|nuORF	ENST00000511807.1_1_5:133707262-133710155:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	555.3016357421875	2	555.301113	1108.58767	-0.61661	-0.00034241	0.23392	0.0001299	-0.38269	-0.00021251	555.3012096762494	73.687	2.0665	71.2	70.826	72.892	-2.4873					111	41	4	0	0	0	0.11632	8	3626	3595;3599;3605;3612;3619;3626;3632;3639		109.48	45.944	1	1016500			49236	3340	40831	40859	52968;52969;52970;52971;52972;52973;52974;52975	52973					0.037722265006550515
RLQEDPPVGV	10	Unmodified	_RLQEDPPVGV_					0	0	0		ENST00000511807.1_1_5:133707262-133710155:+|nuORF;ENSG00000119048|ENST00000265339|UBE2B	ENST00000511807.1_1_5:133707262-133710155:+|nuORF	ENST00000511807.1_1_5:133707262-133710155:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.3021240234375	2	555.301113	1108.58767	0.26089	0.00014487	-0.67411	-0.00037433	-0.41322	-0.00022946	555.3006478022181	74.771	1.3559	71.541	71.24	72.596	-3.2308					77	27	4	0	0	0	0.24109	3	5864	5853;5864;5891		88.177	15.47	1	924810			49237	3340	40831	40859	52976;52977;52978	52977					0.037722265006550515
RLQEDPPVGV	10	Unmodified	_RLQEDPPVGV_					0	0	0		ENST00000511807.1_1_5:133707262-133710155:+|nuORF;ENSG00000119048|ENST00000265339|UBE2B	ENST00000511807.1_1_5:133707262-133710155:+|nuORF	ENST00000511807.1_1_5:133707262-133710155:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	555.301113	1108.58767	0.30711	0.00017054	-0.71527	-0.00039719	-0.40816	-0.00022665	555.300632164424	73.796	1.627	71.396	70.636	72.263	-2.3999	0.017055	-0.00062475	NaN	109.48	80	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	223400			49238	3340	40831	40859							0.037722265006550515
RLQEELEKL	9	Unmodified	_RLQEELEKL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	579.3319702148438	2	579.32987	1156.64519	-0.47057	-0.00027262	1.3372	0.00077469	0.86665	0.00050208	579.3305756777853	73.462	0.67279	73.462	73.195	73.868	0					38	16	4	0	0	0	0.046778	1	7213	7213		120.87	5.9739	1	1852100			49239	3744	40832	40860	52979	52979					0.07313068706230297
RLQEELEKL	9	Unmodified	_RLQEELEKL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	579.32987	1156.64519	-1.5596	-0.0009035	2.0701	0.0011993	0.51057	0.00029579	579.8331088196724	75.773	0.66191	73.402	73.008	73.67	-2.3715	-0.063983	0.0010008	NaN	120.87	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16467			49240	3744	40832	40860							0.07313068706230297
RLQEELEKL	9	Unmodified	_RLQEELEKL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	579.32987	1156.64519	-0.79199	-0.00045882	-0.92941	-0.00053843	-1.7214	-0.00099726	579.32937155284	76.472	0.37332	73.533	73.318	73.691	-2.9389	0.067284	-0.0024746	NaN	120.87	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19771			49241	3744	40832	40860							0.07313068706230297
RLQEEVPLDSV	11	Unmodified	_RLQEEVPLDSV_					0	0	0			REV__ENSG00000023445|ENST00000263464|BIRC3	REV__ENSG00000023445|ENST00000263464|BIRC3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	429.2632141113281	3	428.897987	1283.67213	-0.26428	-0.00011335	-4.1244	-0.001769	-4.3887	-0.0018823	429.2305869196402	40.977	0.31259	38.023	37.893	38.205	-2.9541					7	5	2	0	0	0	0.025668	1	1819	1819		28.577	0.93281	1	14151	+		49242	16557	40833	40861	52980	52980					0.04164132526761932
RLQELERDK	9	Unmodified	_RLQELERDK_					0	0	0		nc|ENSG00000204536|Q8TD31|CCHCR1;nc|ENSG00000204536|Q8TD31-3|CCHCR1;ENSG00000204536|ENST00000396268|CCHCR1	nc|ENSG00000204536|Q8TD31|CCHCR1	nc|ENSG00000204536|Q8TD31|CCHCR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.3750610351562	2	593.830569	1185.64658	-0.28515	-0.00016933	-0.11948	-7.0951E-05	-0.40463	-0.00024028	593.8305067255201	24.061	0.25122	24.061	23.937	24.188	0					8	4	2	0	0	0	0.027453	1	394	394		54.776	10.66	1	34277			49243	8998	40834	40862	52981	52981					0.06118702794992714
RLQKLFEVDS	10	Unmodified	_RLQKLFEVDS_					0	0	0			REV__nc|ENSG00000109762|Q9H3E2|SNX25	REV__nc|ENSG00000109762|Q9H3E2|SNX25	MULTI-MSMS	OvCa9_classI_Rep3	3	412.23162841796875	3	412.231189	1233.67174	1.934	0.00079726	-0.68164	-0.00028099	1.2524	0.00051626	412.2308161483838	65.879	3.828	62.933	62.452	66.28	-2.9459					181	75	4	0	0	0	0.7759	1	2723	2723		20.837	0	1	1016400	+		49244	17948	40835	40863	52982	52982					0.06424757597551434
RLQKSIIGAQ	10	Unmodified	_RLQKSIIGAQ_					0	0	0			REV__nc|ENSG00000150593|Q53EL6-2|PDCD4	REV__nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	OvCa99_classI_Rep5	1	557.3399658203125	2	557.340572	1112.66659	0.70281	0.0003917	-0.97342	-0.00054253	-0.27061	-0.00015082	557.3398876700502	45.897	0.87766	45.897	45.624	46.501	0					43	19	3	0	0	0	0.48398	1	3212	3212		56.434	14.038	1	930120	+		49245	20195	40836	40864	52983	52983					0.11476498525621537
RLQKVVDI	8	Unmodified	_RLQKVVDI_					0	0	0		tr|A0A7D6ZZ34|A0A7D6ZZ34_9CLOTGalactokinaseOS=ClostridiumintestinaleOX=36845GN=galKPE=3SV=1	tr|A0A7D6ZZ34|A0A7D6ZZ34_9CLOTGalactokinaseOS=ClostridiumintestinaleOX=36845GN=galKPE=3SV=1	tr|A0A7D6ZZ34|A0A7D6ZZ34_9CLOTGalactokinaseOS=ClostridiumintestinaleOX=36845GN=galKPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.79443359375	2	485.805834	969.597115	-0.014338	-6.9653E-06	-2.483	-0.0012062	-2.4973	-0.0012132	485.8039867969676	66.641	0.36653	66.641	66.412	66.779	0					13	8	2	0	0	0	0.028476	1	6197	6197		31.955	0	1	370990			49246	35942	40837	40865	52984	52984					0.11110039576851705
RLQLERELQ	9	Unmodified	_RLQLERELQ_					0	0	0			REV__SAYSD1|p.A168V|1|0.05|ENSG00000112167|chr6:39105481-39105481|G/A|missense_variant	REV__SAYSD1|p.A168V|1|0.05|ENSG00000112167|chr6:39105481-39105481|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	592.8413696289062	2	592.840936	1183.66732	0.7254	0.00043004	-0.90422	-0.00053606	-0.17882	-0.00010601	592.8402695831062	67.088	1.1553	64.201	63.984	65.139	-2.8873					44	22	3	0	0	0	0.63422	1	2817	2817		27.882	1.1893	1	68437	+		49247	18081	40838	40866	52985	52985					0.08283293174645223
RLQLERELQ	9	Unmodified	_RLQLERELQ_					0	0	0			REV__SAYSD1|p.A168V|1|0.05|ENSG00000112167|chr6:39105481-39105481|G/A|missense_variant	REV__SAYSD1|p.A168V|1|0.05|ENSG00000112167|chr6:39105481-39105481|G/A|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	592.840936	1183.66732	-0.2215	-0.00013132	-0.42923	-0.00025447	-0.65074	-0.00038578	592.8409604388077	66.679	0.99236	63.984	63.617	64.609	-2.6958	-0.18064	0.00098869	NaN	27.882	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29182	+		49248	18081	40838	40866							0.08283293174645223
RLQLERELQ	9	Unmodified	_RLQLERELQ_					0	0	0			REV__SAYSD1|p.A168V|1|0.05|ENSG00000112167|chr6:39105481-39105481|G/A|missense_variant	REV__SAYSD1|p.A168V|1|0.05|ENSG00000112167|chr6:39105481-39105481|G/A|missense_variant	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	592.840936	1183.66732	0.7254	0.00043004	-0.90422	-0.00053606	-0.17882	-0.00010601	592.8402695831062	67.088	1.1553	64.201	63.984	65.139	-2.8873	0.036649	0.0004255	NaN	27.882	44	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68437	+		49249	18081	40838	40866							0.08283293174645223
RLQLERELQ	9	Unmodified	_RLQLERELQ_					0	0	0			REV__SAYSD1|p.A168V|1|0.05|ENSG00000112167|chr6:39105481-39105481|G/A|missense_variant	REV__SAYSD1|p.A168V|1|0.05|ENSG00000112167|chr6:39105481-39105481|G/A|missense_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	592.840936	1183.66732	1.582	0.00093787	-2.4518	-0.0014535	-0.86981	-0.00051566	592.8394168582024	67.799	0.73051	64.308	64.087	64.818	-3.4902	0.14399	-0.0014094	NaN	27.882	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55344	+		49250	18081	40838	40866							0.08283293174645223
RLQLRLAG	8	Unmodified	_RLQLRLAG_					0	0	0			REV__nc|ENSG00000130479|Q66K74-2|MAP1S	REV__nc|ENSG00000130479|Q66K74-2|MAP1S	MULTI-MSMS	OvCa9_classI_Rep3	3	463.79840087890625	2	463.798343	925.582134	0.29403	0.00013637	-0.86487	-0.00040112	-0.57084	-0.00026475	463.7979721487958	70.79	6.0908	68.07	67.699	73.79	-2.7196					279	121	5	0	0	0	0.73288	1	3330	3330		35.201	0	1	3593600	+		49251	18948	40839	40867	52986	52986					0.11636592499496601
RLQPNVPLV	9	Unmodified	_RLQPNVPLV_					0	0	0		sp|Q6SWA3|UL298_HCMVMProteinUL29/28OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL29PE=3SV=2;sp|P16764|UL29_HCMVAUncharacterizedproteinUL29OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL29PE=3SV=1;sp|C0H677|UL298_HCMVAProteinUL29/UL28OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL29PE=1SV=1	sp|Q6SWA3|UL298_HCMVMProteinUL29/28OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL29PE=3SV=2	sp|Q6SWA3|UL298_HCMVMProteinUL29/28OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL29PE=3SV=2	MULTI-MSMS	OvCa9_classI_Rep3	3	518.3189086914062	2	518.319109	1034.62366	-0.46669	-0.0002419	-0.32842	-0.00017023	-0.79511	-0.00041212	518.3189098840426	93.967	3.1679	92.005	91.526	94.694	-1.9617					143	62	3	0	0	0	0.16524	2	6046	6034;6046		82.305	10.927	1	3024100			49252	32912	40840	40868	52987;52988	52988					0.10773728468166155
RLQPNVPLV	9	Unmodified	_RLQPNVPLV_					0	0	0		sp|Q6SWA3|UL298_HCMVMProteinUL29/28OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL29PE=3SV=2;sp|P16764|UL29_HCMVAUncharacterizedproteinUL29OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL29PE=3SV=1;sp|C0H677|UL298_HCMVAProteinUL29/UL28OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL29PE=1SV=1	sp|Q6SWA3|UL298_HCMVMProteinUL29/28OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL29PE=3SV=2	sp|Q6SWA3|UL298_HCMVMProteinUL29/28OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL29PE=3SV=2	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.319580078125	2	518.319109	1034.62366	-0.603	-0.00031255	-0.40255	-0.00020865	-1.0055	-0.00052119	518.3188494212272	94.504	2.9489	92.036	91.524	94.473	-2.4685					143	58	5	0	0	0	0.22961	1	8282	8282		71.296	11.002	1	2708000			49253	32912	40840	40868	52989	52989					0.10773728468166155
RLQRGWRT	8	Unmodified	_RLQRGWRT_					0	0	0		ENST00000268711.3_1_17:17395027-17395303:+|nuORF	ENST00000268711.3_1_17:17395027-17395303:+|nuORF	ENST00000268711.3_1_17:17395027-17395303:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	536.807373046875	2	536.809774	1071.60499	0.23953	0.00012858	-1.9705	-0.0010578	-1.7309	-0.00092919	536.808594253858	65.887	1.3438	63.191	62.771	64.114	-2.6958					79	26	4	0	0	0	0.6962	1	5104	5104		44.117	6.3053	1	1324500			49254	9975	40841	40869	52990	52990					0.07205611616973329
RLQRPGIL	8	Unmodified	_RLQRPGIL_					0	0	0			REV__tr|A0A553SJM4|A0A553SJM4_NIACIMgtC/SapBfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_17130PE=3SV=1	REV__tr|A0A553SJM4|A0A553SJM4_NIACIMgtC/SapBfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_17130PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	476.8058776855469	2	476.806168	951.597784	-0.12969	-6.1836E-05	0.18603	8.87E-05	0.056342	2.6864E-05	476.8060918683268	43.221	0.98174	43.221	43.014	43.995	0					32	22	3	0	0	0	0.69415	1	2840	2840		44.531	0	1	681550	+		49255	30018	40842	40870	52991	52991					0.12004879016558334
RLQSKTIKV	9	Unmodified	_RLQSKTIKV_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.8446655273438	2	536.84549	1071.67643	-1.0024	-0.00053811	-0.61	-0.00032747	-1.6123	-0.00086558	536.8451277980017	36.729	1.3639	36.729	36.487	37.851	0					64	29	5	0	0	0	0.083631	1	1951	1951		101.6	16.685	1	3866400			49256	1341	40843	40871	52992	52992					0.14345686530987223
RLRALPLTQ	9	Unmodified	_RLRALPLTQ_					0	0	0		ENST00000514698.5_1_4:980866-997838:+|nuORF;ENSG00000127415|ENST00000514224|IDUA;nc|ENSG00000127415|P35475-2|IDUA	ENST00000514698.5_1_4:980866-997838:+|nuORF	ENST00000514698.5_1_4:980866-997838:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	534.3372192382812	2	534.337833	1066.66111	-1.8836	-0.0010065	1.4667	0.00078373	-0.4169	-0.00022277	534.3385363027232	49.37	2.527	46.609	45.829	48.356	-2.7603					129	50	4	0	0	0	0.59259	1	3107	3107		32.812	0.85756	1	911830			49257	3830	40844	40872	52993	52993					0.13044819733772783
RLRALRLAL	9	Unmodified	_RLRALRLAL_					0	0	0		nc|ENSG00000293505|Q96P88|GNRHR2	nc|ENSG00000293505|Q96P88|GNRHR2	nc|ENSG00000293505|Q96P88|GNRHR2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.7647094726562	2	541.369467	1080.72438	-0.62522	-0.00033848	2.4195	0.0013098	1.7942	0.00097135	541.3705651412945	78.787	0.60851	76.036	75.714	76.322	-2.7514					26	12	3	0	0	0	0.027462	1	6332	6332		30.504	13.139	1	43829			49258	15407	40845	40873	52994	52994					0.1872480524166349
RLRALRLAL	9	Unmodified	_RLRALRLAL_					0	0	0		nc|ENSG00000293505|Q96P88|GNRHR2	nc|ENSG00000293505|Q96P88|GNRHR2	nc|ENSG00000293505|Q96P88|GNRHR2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	541.369467	1080.72438	0.17231	9.3284E-05	1.868	0.0010113	2.0403	0.0011046	541.370297553649	78.578	1.1896	76.225	75.749	76.939	-2.3527	0.094785	-0.00017075	NaN	38.806	35	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53573			49259	15407	40845	40873							0.1872480524166349
RLRARGLTV	9	Unmodified	_RLRARGLTV_					0	0	0		ENST00000562120.1_1_16:2093562-2096203:-|nuORF;ENST00000565406.5_1_16:2089927-2094819:-|nuORF;nc|ENSG00000065057|P78549-3|NTHL1;ENSG00000065057|ENST00000651570|NTHL1;nc|ENSG00000065057|P78549|NTHL1	ENST00000562120.1_1_16:2093562-2096203:-|nuORF	ENST00000562120.1_1_16:2093562-2096203:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.7681274414062	2	521.335624	1040.6567	-0.76059	-0.00039652	-2.369	-0.001235	-3.1296	-0.0016316	521.834295247149	76.928	0.72079	73.989	73.645	74.366	-2.9389					23	14	3	0	0	0	0.027462	1	6154	6154		23.042	0	1	20626			49260	1313	40846	40874	52995	52995					0.1379935531085721
RLRARPTEG	9	Unmodified	_RLRARPTEG_					0	0	0			REV__ENST00000607967.1_1_10:104402974-104403835:-|nuORF	REV__ENST00000607967.1_1_10:104402974-104403835:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	528.3070068359375	2	528.307064	1054.59957	-0.094997	-5.0187E-05	0.13038	6.888E-05	0.035381	1.8692E-05	528.3071355576872	73.544	0.6687	73.544	73.276	73.945	0					35	16	3	0	0	0	0.27001	1	7216	7216		66.429	0.96389	1	2152100	+		49261	28093	40847	40875	52996	52996					0.07445888034499148
RLRDEMDAI	9	Unmodified	_RLRDEMDAI_					0	0	0			REV__nc|ENSG00000105357|Q7Z406-4|MYH14	REV__nc|ENSG00000105357|Q7Z406-4|MYH14	MULTI-MSMS	OvCa9_classI_Rep2	2	559.7819213867188	2	559.784773	1117.55499	-0.68857	-0.00038545	-2.665	-0.0014918	-3.3536	-0.0018773	559.783083785333	140.27	1.7727	140.04	139.7	141.47	-0.22696					65	35	3	0	0	0	0.40667	1	14052	14052		51.335	3.6781	1	124330	+		49262	17714	40848	40876	52997	52997					0.0009169610614208068
RLREAHGR	8	Unmodified	_RLREAHGR_					0	0	0			REV__ENST00000361786.6_1_14:77576167-77579814:+|nuORF	REV__ENST00000361786.6_1_14:77576167-77579814:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.7743225097656	2	497.786299	993.558044	-0.61384	-0.00030556	1.6833	0.00083792	1.0694	0.00053235	497.7870616077512	41.515	0.35032	41.515	41.33	41.681	0					11	7	2	0	0	0	0.028476	1	2605	2605		31.955	5.1588	1	62724	+		49263	24865	40849	40877	52998	52998					0.06100752065844972
RLREKDKHI	9	Unmodified	_RLREKDKHI_					0	0	0		ENSG00000117632|ENST00000455785|STMN1;ENST00000465604.1_1_1:26227509-26228203:-|nuORF	ENSG00000117632|ENST00000455785|STMN1	ENSG00000117632|ENST00000455785|STMN1	MULTI-MSMS	OvCa99_classI_Rep5	1	597.8563842773438	2	597.856921	1193.69929	-0.44405	-0.00026548	0.45165	0.00027002	0.0075957	4.5411E-06	597.8571380443942	25.267	1.0496	25.267	25.092	26.142	0					47	20	5	0	0	0	0.38529	1	544	544		53.351	19.43	1	886080			49264	3269	40850	40878	52999	52999					0.11018705648439209
RLRESMAA	8	Unmodified	_RLRESMAA_					0	0	0			REV__nc|ENSG00000133193|Q969W3|VCF1	REV__nc|ENSG00000133193|Q969W3|VCF1	MULTI-SECPEP	OvCa9_classI_Rep2	2	466.2641906738281	2	467.250369	932.486184	-0.67862	-0.00031709	-4.27	-0.0019951	-4.9486	-0.0023122	467.2484475672527	60.063	0.88604	57.293	56.933	57.819	-2.7702					37	16	3	0	0	0	0.028476	1	4367	4367		30.504	0	1	41552	+		49265	19134	40851	40879	53000	53000					0.017240765970996108
RLRFAVFT	8	Unmodified	_RLRFAVFT_					0	0	0		ENSG00000154478|ENST00000284674|GPR26	ENSG00000154478|ENST00000284674|GPR26	ENSG00000154478|ENST00000284674|GPR26	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.3349304199219	2	505.300719	1008.58688	-1.6182	-0.00081767	1.2811	0.00064734	-0.33707	-0.00017032	505.3012409059208	52.067	0.84266	49.254	48.848	49.691	-2.8129					27	16	2	0	0	0	0.028476	1	3493	3493		17.365	3.2278	1	16905			49266	5740	40852	40880	53001	53001					0.0829347664226816
RLRFAVFT	8	Unmodified	_RLRFAVFT_					0	0	0		ENSG00000154478|ENST00000284674|GPR26	ENSG00000154478|ENST00000284674|GPR26	ENSG00000154478|ENST00000284674|GPR26	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	505.300719	1008.58688	-0.78731	-0.00039783	0.37519	0.00018959	-0.41212	-0.00020824	505.30051710138747	52.385	1.1519	49.177	48.792	49.944	-3.208	-0.038206	-0.00040741	NaN	17.365	48	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71293			49267	5740	40852	40880							0.0829347664226816
RLRFLVKKWQE	11	Unmodified	_RLRFLVKKWQE_					0	0	0		nc|ENSG00000160299|O95613-2|PCNT;ENSG00000160299|ENST00000359568|PCNT;ENST00000465356.1_1_21:47860977-47862746:+|nuORF	nc|ENSG00000160299|O95613-2|PCNT	nc|ENSG00000160299|O95613-2|PCNT	MULTI-MSMS	OvCa9_classI_Rep2	2	501.63299560546875	3	501.636661	1501.88815	-5.5139	-0.002766	0.35993	0.00018055	-5.154	-0.0025854	501.63686894791874	162.29	1.9089	162.06	160.59	162.5	-0.22696					90	37	3	0	0	0	0.72516	1	16538	16538		13.508	3.8618	1	106580			49268	6056	40853	40881	53002	53002					0.15728358221917915
RLRFLVKKWQE	11	Unmodified	_RLRFLVKKWQE_					0	0	0		nc|ENSG00000160299|O95613-2|PCNT;ENSG00000160299|ENST00000359568|PCNT;ENST00000465356.1_1_21:47860977-47862746:+|nuORF	nc|ENSG00000160299|O95613-2|PCNT	nc|ENSG00000160299|O95613-2|PCNT	MULTI-MSMS	OvCa9_classI_Rep3	3	501.6332702636719	3	501.636661	1501.88815	-7.1576	-0.0035905	1.9793	0.00099288	-5.1783	-0.0025976	501.63774554440306	163.54	2.3462	162.14	160.37	162.72	-1.3925					135	52	3	0	0	0	0.7257	1	14252	14252		6.3209	0.31984	1	91935			49269	6056	40853	40881	53003	53003					0.15728358221917915
RLRGAPLLV	9	Unmodified	_RLRGAPLLV_					0	0	0		ENST00000569024.1_1_16:83948407-83949091:+|nuORF	ENST00000569024.1_1_16:83948407-83949091:+|nuORF	ENST00000569024.1_1_16:83948407-83949091:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	497.8305969238281	2	497.829643	993.644734	-0.82413	-0.00041027	0.44661	0.00022234	-0.37752	-0.00018794	497.829829623416	90.268	2.2343	88.187	87.798	90.033	-2.0805					128	43	4	0	0	0	0.32337	4	5587	5587;5610;5617;5623		60.294	7.9948	1	1075500			49270	13879	40854	40882	53004;53005;53006;53007	53004					0.14765738567700737
RLRGAPLLV	9	Unmodified	_RLRGAPLLV_					0	0	0		ENST00000569024.1_1_16:83948407-83949091:+|nuORF	ENST00000569024.1_1_16:83948407-83949091:+|nuORF	ENST00000569024.1_1_16:83948407-83949091:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.83062744140625	2	497.829643	993.644734	-0.38661	-0.00019247	-0.044384	-2.2096E-05	-0.431	-0.00021456	497.8295675245135	90.817	2.34	88.242	87.904	90.244	-2.575					125	45	4	0	0	0	0.32337	3	7826	7826;7861;7874		60.294	7.7867	1	856980			49271	13879	40854	40882	53008;53009;53010	53008					0.14765738567700737
RLRGFWPR	8	Unmodified	_RLRGFWPR_					0	0	0		nc|ENSG00000166473|Q7Z442-2|PKD1L2;nc|ENSG00000166473|Q7Z442|PKD1L2;ENST00000533478.5_1_16:81174978-81214887:-|nuORF;nc|ENSG00000166473|Q7Z442-4|PKD1L2;ENST00000299598.11_1_16:81199358-81222588:-|nuORF;nc|ENSG00000166473|Q7Z442-3|PKD1L2;nc|ENSG00000166473|Q7Z442-6|PKD1L2	nc|ENSG00000166473|Q7Z442-2|PKD1L2	nc|ENSG00000166473|Q7Z442-2|PKD1L2	MULTI-MSMS	OvCa99_classI_Rep5	1	544.3147583007812	2	544.317235	1086.61992	-0.80065	-0.00043581	-4.2023	-0.0022874	-5.0029	-0.0027232	544.3147953600668	59.408	0.6823	59.408	59.12	59.802	0					31	17	2	0	0	0	0.37872	1	5138	5138		92.191	7.0298	1	2550800			49272	15156	40855	40883	53011	53011					0.08007103484965228
RLRGLGPGSA	10	Unmodified	_RLRGLGPGSA_					0	0	0		nc|ENSG00000105122|Q86YV0-2|RASAL3;ENSG00000105122|ENST00000343625|RASAL3	nc|ENSG00000105122|Q86YV0-2|RASAL3	nc|ENSG00000105122|Q86YV0-2|RASAL3	MULTI-MSMS	OvCa9_classI_Rep2	2	492.2903747558594	2	492.290882	982.567212	-1.3787	-0.00067874	1.1745	0.00057819	-0.20425	-0.00010055	492.2912275187481	35.09	1.142	32.381	32.158	33.3	-2.7097					49	22	4	0	0	0	0.50999	1	1409	1409		52.937	1.744	1	210830			49273	2422	40856	40884	53012	53012					0.07523100631510715
RLRGLPALLS	10	Unmodified	_RLRGLPALLS_					0	0	0			REV__ENSG00000099769|ENST00000215539|IGFALS	REV__ENSG00000099769|ENST00000215539|IGFALS	MULTI-MSMS	OvCa9_classI_Rep2	2	548.3530883789062	2	548.353483	1094.69241	0.45545	0.00024975	-1.1823	-0.0006483	-0.72683	-0.00039856	548.3528407681815	96.64	1.7696	95.682	95.381	97.15	-0.95857					98	35	5	0	0	0	0.6349	1	8736	8736		37.812	1.3648	1	468860	+		49274	17331	40857	40885	53013	53013					0.14885392767882877
RLRGPALPLL	10	Unmodified	_RLRGPALPLL_					0	0	0			REV__nc|ENSG00000135677|P15586-2|GNS	REV__nc|ENSG00000135677|P15586-2|GNS	MULTI-SECPEP	OvCa9_classI_Rep3	3	553.3171997070312	2	553.36385	1104.71315	-1.5219	-0.00084214	0.71643	0.00039644	-0.80544	-0.0004457	553.3642527047142	85.085	0.73656	82.864	82.548	83.285	-2.2204					24	14	2	0	0	0	0.027177	1	4939	4939		18.324	1.8513	1	30735	+		49275	19309	40858	40886	53014	53014					0.16497983147542072
RLRHALRLH	9	Unmodified	_RLRHALRLH_					0	0	0		nc|ENSG00000140464|P29590-13|PML;nc|ENSG00000140464|P29590-3|PML;nc|ENSG00000140464|P29590-8|PML	nc|ENSG00000140464|P29590-13|PML	nc|ENSG00000140464|P29590-13|PML	MULTI-MSMS	OvCa9_classI_Rep2	2	586.369140625	2	586.36779	1170.72103	0.2284	0.00013393	1.6693	0.00097881	1.8977	0.0011127	586.368761284623	92.323	2.3778	91.155	90.866	93.244	-1.168					141	45	5	0	0	0	0.36502	3	8217	8217;8231;8261		55.504	5.6941	1	1452400			49276	15055	40859	40887	53015;53016;53017	53015					0.14249555187666374
RLRHALRLH	9	Unmodified	_RLRHALRLH_					0	0	0		nc|ENSG00000140464|P29590-13|PML;nc|ENSG00000140464|P29590-3|PML;nc|ENSG00000140464|P29590-8|PML	nc|ENSG00000140464|P29590-13|PML	nc|ENSG00000140464|P29590-13|PML	MULTI-MSMS	OvCa9_classI_Rep3	3	586.3699340820312	2	586.36779	1170.72103	-2.3837	-0.0013977	4.4327	0.0025992	2.049	0.0012015	586.3702593938116	93.813	3.2699	91.852	91.476	94.746	-1.9617					176	64	5	0	0	0	0.31747	2	6073	6016;6073		60.972	6.1956	1	1678300			49277	15055	40859	40887	53018;53019	53019					0.14249555187666374
RLRHALRLH	9	Unmodified	_RLRHALRLH_					0	0	0		nc|ENSG00000140464|P29590-13|PML;nc|ENSG00000140464|P29590-3|PML;nc|ENSG00000140464|P29590-8|PML	nc|ENSG00000140464|P29590-13|PML	nc|ENSG00000140464|P29590-13|PML	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.3690795898438	2	586.36779	1170.72103	-0.81014	-0.00047504	2.802	0.001643	1.9919	0.001168	586.3692629340027	94.416	2.9527	91.947	91.666	94.618	-2.4685					167	58	5	0	0	0	0.38529	2	8288	8264;8288		53.351	9.2347	1	1387500			49278	15055	40859	40887	53020;53021	53021					0.14249555187666374
RLRHRDPRR	9	Unmodified	_RLRHRDPRR_					0	0	0		ENST00000607453.1_1_1:245133290-245134376:-|nuORF	ENST00000607453.1_1_1:245133290-245134376:-|nuORF	ENST00000607453.1_1_1:245133290-245134376:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	421.23883056640625	3	421.253544	1260.7388	1.8442	0.00077687	3.945	0.0016618	5.7892	0.0024387	421.25501225906754	65.577	0.76057	62.631	62.198	62.959	-2.9459					20	14	2	0	0	0	0.027462	1	2624	2624		18.262	0.79408	1	10686			49279	14286	40860	40888	53022	53022					0.11886270442528257
RLRILRFYKRM	11	Unmodified	_RLRILRFYKRM_					0	0	0			REV__tr|A0A7D6VNP0|A0A7D6VNP0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13400PE=4SV=1	REV__tr|A0A7D6VNP0|A0A7D6VNP0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13400PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	518.3198852539062	3	517.985407	1550.93439	2.1474	0.0011123	-3.1637	-0.0016387	-1.0163	-0.00052645	517.9837026186864	89.091	1.1309	89.091	88.803	89.933	0					92	27	5	0	0	0	0.72511	1	9479	9479		14.086	2.1536	1	6645600	+		49280	31196	40861	40889	53023	53023					0.18096099852368752
RLRILRFYKRM	11	Unmodified	_RLRILRFYKRM_					0	0	0			REV__tr|A0A7D6VNP0|A0A7D6VNP0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13400PE=4SV=1	REV__tr|A0A7D6VNP0|A0A7D6VNP0_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13400PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.3198852539062	3	517.985407	1550.93439	2.1474	0.0011123	-3.1637	-0.0016387	-1.0163	-0.00052645	517.9837026186864	89.091	1.1309	89.091	88.803	89.933	0					92	27	5	0	0	0	0.026435	1	9479	9479		14.086	2.1536	1	6645600	+		49281	31196	40861	40889	53024	53024					0.18096099852368752
RLRIPCSR	8	Unmodified	_RLRIPCSR_					0	0	0		chr2:15940743-15941948|394|26.69|0.81|5.04|+|0|MYCN,MYCN|1	chr2:15940743-15941948|394|26.69|0.81|5.04|+|0|MYCN,MYCN|1	chr2:15940743-15941948|394|26.69|0.81|5.04|+|0|MYCN,MYCN|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.8250732421875	2	500.795278	999.576002	-1.8141	-0.00090849	-3.0777	-0.0015413	-4.8918	-0.0024498	500.79246339087877	61.679	0.87156	58.92	58.464	59.335	-2.7593					21	16	3	0	0	0	0.028476	1	4570	4570		54.776	0	1	33926			49282	431	40862	40890	53025	53025					0.07619750996343555
RLRKRVRQYLD	11	Unmodified	_RLRKRVRQYLD_					0	0	0		nc|ENSG00000130177|Q13042-3|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;ENSG00000130177|ENST00000356221|CDC16;ENST00000375310.5_2_13:115000559-115004790:+|nuORF;ENST00000494766.5_1_13:115000559-115007787:+|nuORF	nc|ENSG00000130177|Q13042-3|CDC16	nc|ENSG00000130177|Q13042-3|CDC16	MULTI-MSMS	OvCa9_classI_Rep2	2	501.63311767578125	3	501.639064	1501.89536	-5.5139	-0.002766	-4.4315	-0.002223	-9.9454	-0.004989	501.63686894791874	162.29	1.9089	162.06	160.59	162.5	-0.22696					90	37	3	0	0	0	0.72575	1	16464	16464		5.6988	1.2857	1	106580			49283	3964	40863	40891	53026	53026					0.1644909082237973
RLRKYRGN	8	Unmodified	_RLRKYRGN_					0	0	0		ENST00000409870.1_1_2:191045212-191045605:+|nuORF	ENST00000409870.1_1_2:191045212-191045605:+|nuORF	ENST00000409870.1_1_2:191045212-191045605:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8167724609375	2	531.817599	1061.62064	-1.8698	-0.0009944	0.56891	0.00030256	-1.3009	-0.00069184	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.74679	1	13725	13725		28.254	0.37203	1	166960			49284	11538	40864	40892	53027	53027					0.09229898134049108
RLRLCKLD	8	Unmodified	_RLRLCKLD_					0	0	0			REV__ENSG00000197442|ENST00000359015|MAP3K5	REV__ENSG00000197442|ENST00000359015|MAP3K5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.2466125488281	2	508.805311	1015.59607	-0.023165	-1.1786E-05	-4.2935	-0.0021845	-4.3166	-0.0021963	508.80332940931254	59.714	0.39399	56.322	56.002	56.396	-3.392					13	7	2	0	0	0	0.028476	1	4007	4007		26.796	2.5934	1	105510	+		49285	22925	40865	40893	53028	53028					0.08889501936289435
RLRLEQLI	8	Unmodified	_RLRLEQLI_					0	0	0		ENST00000379221.3_1_13:43659911-43659953:+|nuORF	ENST00000379221.3_1_13:43659911-43659953:+|nuORF	ENST00000379221.3_1_13:43659911-43659953:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.28759765625	2	520.832383	1039.65021	-1.3462	-0.00070115	1.1365	0.00059193	-0.20971	-0.00010923	520.83271196571	42.545	1.3938	39.565	38.853	40.247	-2.9804					40	26	2	0	0	0	0.028476	1	1954	1954		27.882	0	1	137790			49286	11121	40866	40894	53029	53029					0.13197417359515384
RLRLEQLI	8	Unmodified	_RLRLEQLI_					0	0	0		ENST00000379221.3_1_13:43659911-43659953:+|nuORF	ENST00000379221.3_1_13:43659911-43659953:+|nuORF	ENST00000379221.3_1_13:43659911-43659953:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	520.832383	1039.65021	1.2523	0.00065223	-1.2993	-0.00067674	-0.047063	-2.4512E-05	520.8314073678855	42.152	0.93752	39.442	39.177	40.114	-2.7097	-0.061234	-0.0014307	NaN	27.882	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45998			49287	11121	40866	40894							0.13197417359515384
RLRLFAPT	8	Unmodified	_RLRLFAPT_					0	0	0			REV__chr17:28547849-28548010|356|11.82|0.0|20.17|-|0|UNC119,None|1	REV__chr17:28547849-28548010|356|11.82|0.0|20.17|-|0|UNC119,None|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.29791259765625	2	487.300719	972.586885	-1.2796	-0.00062354	-3.1792	-0.0015492	-4.4588	-0.0021728	487.29906414689214	146.58	1.2256	145.15	144.7	145.92	-1.4357					56	23	3	0	0	0	0.73288	1	14394	14394		35.201	0	1	319100	+		49288	15940	40867	40895	53030	53030					0.0994947664225947
RLRLFAPT	8	Unmodified	_RLRLFAPT_					0	0	0			REV__chr17:28547849-28548010|356|11.82|0.0|20.17|-|0|UNC119,None|1	REV__chr17:28547849-28548010|356|11.82|0.0|20.17|-|0|UNC119,None|1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	487.300719	972.586885	-3.9419	-0.0019209	-0.5142	-0.00025057	-4.4561	-0.0021715	487.30037167635396	146.15	0.99353	145.2	144.85	145.84	-0.95946	0.023509	0.0010259	NaN	35.201	46	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114610	+		49289	15940	40867	40895							0.0994947664225947
RLRLFAPT	8	Unmodified	_RLRLFAPT_					0	0	0			REV__chr17:28547849-28548010|356|11.82|0.0|20.17|-|0|UNC119,None|1	REV__chr17:28547849-28548010|356|11.82|0.0|20.17|-|0|UNC119,None|1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	487.300719	972.586885	-1.2796	-0.00062354	-3.1792	-0.0015492	-4.4588	-0.0021728	487.29906414689214	146.58	1.2256	145.15	144.7	145.92	-1.4357	-0.023509	-0.0015714	NaN	35.201	56	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	319100	+		49290	15940	40867	40895							0.0994947664225947
RLRLGPRG	8	Unmodified	_RLRLGPRG_					0	0	0		ENSG00000138448|ENST00000261023|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;ITGAV|p.L18H|1|0.15|ENSG00000138448|chr2:186590391-186590391|T/A|missense_variant	ENSG00000138448|ENST00000261023|ITGAV	ENSG00000138448|ENST00000261023|ITGAV	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.7619323730469	2	462.796135	923.577717	-1.1998	-0.00055525	-3.3265	-0.0015395	-4.5262	-0.0020947	462.7935313896385	80.466	0.2925	77.755	77.566	77.858	-2.7106					8	5	2	0	0	0	0.028476	1	6578	6578		13.775	0.81615	1	16735			49291	4689	40868	40896	53031	53031					0.11287128076617137
RLRLIEAAD	9	Unmodified	_RLRLIEAAD_					0	0	0			REV__nc|ENSG00000106665|Q9UDT6-2|CLIP2	REV__nc|ENSG00000106665|Q9UDT6-2|CLIP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.2908935546875	2	528.811648	1055.60874	-1.1096	-0.00058678	-1.6497	-0.00087241	-2.7594	-0.0014592	528.8119692259054	36.823	0.45139	36.823	36.662	37.114	0					19	9	4	0	0	0	0.027453	1	1960	1960		45.972	11.8	1	448200	+		49292	17819	40869	40897	53032	53032					0.08316236600194316
RLRLKGVLLVP	11	Unmodified	_RLRLKGVLLVP_					0	0	0			REV__ENST00000418747.2_1_9:130877356-130879998:-|nuORF	REV__ENST00000418747.2_1_9:130877356-130879998:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	632.429931640625	2	632.434807	1262.85506	-5.7395	-0.0036299	-0.067111	-4.2443E-05	-5.8066	-0.0036723	632.4345273657251	163.44	1.2114	163.21	162.72	163.93	-0.22696					106	40	3	0	0	0	0.72531	3	16632	16613;16629;16632		11.511	10.603	1	356230	+		49293	25573	40870	40898	53033;53034;53035	53035					0.2341477616987504
RLRLMGVRIS	10	Unmodified	_RLRLMGVRIS_					0	0	0		ENSG00000122008|ENST00000241436|POLK;nc|ENSG00000122008|Q9UBT6-8|POLK	ENSG00000122008|ENST00000241436|POLK	ENSG00000122008|ENST00000241436|POLK	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.1332092285156	3	400.91677	1199.72848	1.137	0.00045585	2.8527	0.0011437	3.9897	0.0015995	400.91776307424766	35.399	0.60123	35.399	35.198	35.799	0					26	12	3	0	0	0	0.026688	1	1819	1819		24.232	11.799	1	56808			49294	3510	40871	40899	53036	53036					0.13660526673106688
RLRLPGTGA	9	Unmodified	_RLRLPGTGA_					0	0	0		ENST00000290858.10_1_16:67063120-67063363:+|nuORF	ENST00000290858.10_1_16:67063120-67063363:+|nuORF	ENST00000290858.10_1_16:67063120-67063363:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	470.78759765625	2	470.787976	939.561398	0.23229	0.00010936	-0.89827	-0.0004229	-0.66598	-0.00031354	470.78745923109625	40.781	2.1682	38.071	37.601	39.769	-2.7097					104	43	4	0	0	0	0.59259	1	2065	2065		32.812	2.3088	1	1630700			49295	10091	40872	40900	53037	53037					0.08920002119862147
RLRLRVSLSH	10	Unmodified	_RLRLRVSLSH_					0	0	0		nc|ENSG00000151322|Q8IXF0-4|NPAS3;nc|ENSG00000151322|Q8IXF0-2|NPAS3;nc|ENSG00000151322|Q8IXF0-3|NPAS3;ENSG00000151322|ENST00000356141|NPAS3;chr14:32935003-33215182|359|14.38|0.31|5.53|+|ENST00000551634|NPAS3,NPAS3;chr14:32935003-33055905|363|14.48|0.18|6.33|+|ENST00000551492|NPAS3,NPAS3	nc|ENSG00000151322|Q8IXF0-4|NPAS3	nc|ENSG00000151322|Q8IXF0-4|NPAS3	MULTI-MSMS	OvCa99_classI_Rep5	1	618.8867797851562	2	618.886013	1235.75747	0.35023	0.00021675	3.0978	0.0019172	3.448	0.0021339	618.8876833192716	45.601	0.60288	45.601	45.332	45.934	0					36	13	4	0	0	0	0.68624	1	3176	3176		33.922	1.1711	1	720770			49296	347	40873	40901	53038	53038					0.14902387293750508
RLRMLLKA	8	Unmodified	_RLRMLLKA_					0	0	0		ENSG00000104805|ENST00000405315|NUCB1;NUCB1-FAM83E|1|fusion	ENSG00000104805|ENST00000405315|NUCB1	ENSG00000104805|ENST00000405315|NUCB1	MULTI-MSMS	OvCa9_classI_Rep2	2	500.82489013671875	2	500.826047	999.63754	-1.7989	-0.00090096	-2.4296	-0.0012168	-4.2285	-0.0021177	500.8247449295919	61.278	4.4126	58.518	58.094	62.506	-2.7593					209	84	4	0	0	0	0.7043	1	4588	4588		42.474	0	1	946070			49297	2393	40874	40902	53039	53039					0.13770682695621872
RLRNGGPTL	9	Unmodified	_RLRNGGPTL_					0	0	0			REV__nc|ENSG00000166046|Q8N4U5-2|TCP11L2	REV__nc|ENSG00000166046|Q8N4U5-2|TCP11L2	MULTI-MSMS	OvCa9_classI_Rep2	2	492.2903137207031	2	492.290882	982.567212	-1.3787	-0.00067874	1.1745	0.00057819	-0.20425	-0.00010055	492.2912275187481	35.09	1.142	32.381	32.158	33.3	-2.7097					49	22	4	0	0	0	0.14998	1	1397	1397		84.916	8.1414	1	210830	+		49298	21152	40875	40903	53040	53040					0.07523100631522084
RLRNGGPTL	9	Unmodified	_RLRNGGPTL_					0	0	0			REV__nc|ENSG00000166046|Q8N4U5-2|TCP11L2	REV__nc|ENSG00000166046|Q8N4U5-2|TCP11L2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	492.290882	982.567212	1.1668	0.0005744	-1.9293	-0.00094975	-0.76247	-0.00037536	492.2895421021049	35.45	0.90129	32.601	32.089	32.99	-2.849	0.11025	-0.0027054	NaN	84.916	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12135	+		49299	21152	40875	40903							0.07523100631522084
RLRNKHLI	8	Unmodified	_RLRNKHLI_					0	0	0			REV__CDC42BPB|p.S1423Ffs*2|1|0.11|ENSG00000198752|chr14:102944030-102944031|AG/-|frameshift_variant	REV__CDC42BPB|p.S1423Ffs*2|1|0.11|ENSG00000198752|chr14:102944030-102944031|AG/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.2955322265625	2	525.338167	1048.66178	-0.5809	-0.00030517	0.17628	9.2606E-05	-0.40462	-0.00021256	525.3380711917999	47.319	1.4859	44.61	43.993	45.479	-2.7097					56	29	3	0	0	0	0.028476	1	2953	2953		25.45	10.585	1	48240	+		49300	15764	40876	40904	53041	53041					0.1393965917350215
RLRNNSISIG	10	Unmodified	_RLRNNSISIG_					0	0	0			REV__tr|A0A553SU92|A0A553SU92_NIACIHTHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06490PE=4SV=1	REV__tr|A0A553SU92|A0A553SU92_NIACIHTHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06490PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	565.3250122070312	2	565.325454	1128.63635	0.38003	0.00021484	-1.2183	-0.00068871	-0.83822	-0.00047387	565.3248218929846	32.675	0.38947	32.675	32.503	32.892	0					28	7	5	0	0	0	0.49558	1	1464	1464		54.776	0.053964	1	3784000	+		49301	31052	40877	40905	53042	53042					0.0771813986041252
RLRNPLERP	9	Unmodified	_RLRNPLERP_					0	0	0		ENSG00000260220|ENST00000638797|CCDC187;nc|ENSG00000260220|A0A096LP49-2|CCDC187;nc|ENSG00000260220|A0A096LP49|CCDC187	ENSG00000260220|ENST00000638797|CCDC187	ENSG00000260220|ENST00000638797|CCDC187	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8426513671875	2	575.843813	1149.67307	-2.8608	-0.0016474	1.7444	0.0010045	-1.1164	-0.00064289	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.69895	1	14648	14648		18.324	1.8513	1	356230			49302	9490	40878	40906	53043	53043					0.10422436476960684
RLRNPLERP	9	Unmodified	_RLRNPLERP_					0	0	0		ENSG00000260220|ENST00000638797|CCDC187;nc|ENSG00000260220|A0A096LP49-2|CCDC187;nc|ENSG00000260220|A0A096LP49|CCDC187	ENSG00000260220|ENST00000638797|CCDC187	ENSG00000260220|ENST00000638797|CCDC187	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.843017578125	2	575.843813	1149.67307	-0.33973	-0.00019563	-0.25402	-0.00014628	-0.59375	-0.00034191	575.8433458482052	142.38	3.7668	140.93	139.05	142.82	-1.4532					179	72	3	0	0	0	0.62352	1	14023	14023		29.15	1.2673	1	165140			49303	9490	40878	40906	53044	53044					0.10422436476960684
RLRPGALNS	9	Unmodified	_RLRPGALNS_					0	0	0		ENST00000455537.6_1_12:57943901-57943949:+|nuORF	ENST00000455537.6_1_12:57943901-57943949:+|nuORF	ENST00000455537.6_1_12:57943901-57943949:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.2907409667969	2	492.290882	982.567212	1.0342	0.00050911	-1.3373	-0.00065835	-0.30315	-0.00014924	492.29012268091446	33.667	1.6416	30.879	30.508	32.15	-2.7881					88	32	4	0	0	0	0.21231	2	926	926;975		74.255	3.5442	1	677830			49304	12098	40879	40907	53045;53046	53045					0.07523100631510715
RLRPIEKV	8	Unmodified	_RLRPIEKV_					0	0	0			REV__ENST00000576058.2_1_16:13552215-13552527:+|nuORF	REV__ENST00000576058.2_1_16:13552215-13552527:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	505.82623291015625	2	505.827101	1009.63965	-1.2196	-0.00061688	0.87052	0.00044033	-0.34903	-0.00017655	505.8274041320969	77.702	2.9828	75.35	74.262	77.244	-2.3527					140	58	4	0	0	0	0.68704	1	4056	4056		45.972	0	1	813550	+		49305	27780	40880	40908	53047	53047					0.13521434705080537
RLRPLLSTA	9	Unmodified	_RLRPLLSTA_					0	0	0			REV__nc|ENSG00000103932|Q9BWH6-2|RPAP1	REV__nc|ENSG00000103932|Q9BWH6-2|RPAP1	MSMS	OvCa9_classI_Rep2	2	513.8239135742188	2	513.824558	1025.63456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.097	1	64.436	63.936	64.936	-2.661								0	0	0	0.17192	1	5229	5229		45.972	5.1941	1		+		49306	17636	40881	40909	53048	53048					0.12277130842471706
RLRPRKTI	8	Unmodified	_RLRPRKTI_					0	0	0		ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3480224609375	2	520.345992	1038.67743	1.3364	0.00069541	0.90287	0.00046981	2.2393	0.0011652	520.346442572037	129.27	2.7244	129.04	128.62	131.35	-0.22697					153	54	5	0	0	0	0.66704	1	12810	12810		50.025	0.58299	1	2451300			49307	935	40882	40910	53049	53049					0.15963945690555192
RLRQGIAL	8	Unmodified	_RLRQGIAL_					0	0	0			REV__ENSG00000164363|ENST00000324642|SLC6A18	REV__ENSG00000164363|ENST00000324642|SLC6A18	MULTI-MSMS	OvCa9_classI_Rep2	2	463.7982177734375	2	463.798343	925.582134	0.21037	9.7568E-05	-1.0086	-0.0004678	-0.79827	-0.00037024	463.7978667804196	70.561	4.2201	67.99	67.714	71.934	-2.5707					173	80	4	0	0	0	0.69415	2	5693	5693;5699		44.531	2.0566	1	2590100	+		49308	20983	40883	40911	53050;53051	53050					0.11636592499496601
RLRQNLPS	8	Unmodified	_RLRQNLPS_					0	0	0		ENST00000490170.5_1_1:27677209-27677560:+|nuORF	ENST00000490170.5_1_1:27677209-27677560:+|nuORF	ENST00000490170.5_1_1:27677209-27677560:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.2908935546875	2	492.290882	982.567212	1.0342	0.00050911	-1.3373	-0.00065835	-0.30315	-0.00014924	492.29012268091446	33.667	1.6416	30.879	30.508	32.15	-2.7881					88	32	4	0	0	0	0.68714	1	903	903		45.952	1.8352	1	677830			49309	12692	40884	40912	53052	53052					0.07523100631499346
RLRQRASSA	9	Unmodified	_RLRQRASSA_					0	0	0			REV__CON__P02769	REV__CON__P02769	MSMS	OvCa9_classI_Rep3	3	522.8101806640625	2	522.804688	1043.59482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	119.81	1	118.78	118.28	119.28	-1.0271								0	0	0	0.17824	1	9103	9103		37.159	0.13063	1		+	+	49310	16185	40885	40913	53053	53053					0.07477003891767708
RLRRAFVP	8	Unmodified	_RLRRAFVP_					0	0	0			REV__ENSG00000139549|ENST00000649637|DHH	REV__ENSG00000139549|ENST00000649637|DHH	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.2801818847656	2	507.81961	1013.62467	-1.1306	-0.00057416	3.5878	0.001822	2.4572	0.0012478	507.82133304946296	76.207	1.2981	73.835	73.417	74.715	-2.3715					44	24	2	0	0	0	0.028476	1	3990	3990		33.516	15.191	1	93655	+		49311	19617	40886	40914	53054	53054					0.11839987627740811
RLRRIHAE	8	Unmodified	_RLRRIHAE_					0	0	0		nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;nc|ENSG00000070882|Q9H4L5-6|OSBPL3;nc|ENSG00000070882|Q9H4L5-5|OSBPL3	nc|ENSG00000070882|Q9H4L5-2|OSBPL3	nc|ENSG00000070882|Q9H4L5-2|OSBPL3	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.8037719726562	2	525.817599	1049.62064	-0.80773	-0.00042472	2.3945	0.0012591	1.5868	0.00083438	525.8187775129165	80.942	1.932	78.62	77.878	79.81	-2.3226					57	37	2	0	0	0	0.028476	1	4388	4388		35.201	3.2459	1	71858			49312	1439	40887	40915	53055	53055					0.09781898134019684
RLRRKRRESAS	11	Unmodified	_RLRRKRRESAS_					0	0	0		ENST00000494092.1_1_1:44686103-44686287:+|nuORF	ENST00000494092.1_1_1:44686103-44686287:+|nuORF	ENST00000494092.1_1_1:44686103-44686287:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.2826843261719	3	472.286913	1413.83891	-5.3969	-0.0025489	-1.0721	-0.00050635	-6.469	-0.0030552	472.28668669654706	159.46	3.529	157.88	156.69	160.22	-1.5858					186	88	4	0	0	0	0.72516	1	15755	15755		13.508	1.0751	1	120390			49313	12750	40888	40916	53056	53056					0.1485446298570423
RLRRLLSN	8	Unmodified	_RLRRLLSN_					0	0	0		PTPRT|p.L462R|1|0.06|ENSG00000196090|chr20:42472331-42472331|A/C|missense_variant	PTPRT|p.L462R|1|0.06|ENSG00000196090|chr20:42472331-42472331|A/C|missense_variant	PTPRT|p.L462R|1|0.06|ENSG00000196090|chr20:42472331-42472331|A/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.8239135742188	2	514.327799	1026.64105	-0.23257	-0.00011962	-3.6332	-0.0018687	-3.8658	-0.0019883	514.3259118750658	67.033	2.127	64.372	64	66.127	-2.661					74	42	3	0	0	0	0.028476	1	5229	5229		37.159	0	1	737710			49314	15531	40889	40917	53057	53057					0.12879068793859005
RLRRLLYVG	9	Unmodified	_RLRRLLYVG_					0	0	0		ENST00000283882.3_1_16:75448580-75467275:-|nuORF	ENST00000283882.3_1_16:75448580-75467275:-|nuORF	ENST00000283882.3_1_16:75448580-75467275:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	573.3688354492188	2	573.366924	1144.7193	-0.0092487	-5.3029E-06	-0.62958	-0.00036098	-0.63882	-0.00036628	573.3665679624819	57.754	3.5482	57.754	57.48	61.028	0					220	87	5	0	0	0	0.42057	1	4882	4882		50.025	2.1089	1	19298000			49315	10063	40890	40918	53058	53058					0.15272501379058667
RLRRLVTA	8	Unmodified	_RLRRLVTA_					0	0	0		ENSG00000100888|ENST00000646647|CHD8;nc|ENSG00000100888|Q9HCK8-2|CHD8	ENSG00000100888|ENST00000646647|CHD8	ENSG00000100888|ENST00000646647|CHD8	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.7762451171875	2	492.824892	983.635232	-0.78297	-0.00038587	0.38861	0.00019151	-0.39436	-0.00019435	492.82516030097884	25.367	0.25055	25.367	25.242	25.493	0					6	4	2	0	0	0	0.028476	1	557	557		20.482	0	1	9640.5			49316	2115	40891	40919	53059	53059					0.14275970282164963
RLRRRGNPRRR	11	Unmodified	_RLRRRGNPRRR_					0	0	0			REV__ENSG00000101825|ENST00000217939|MXRA5	REV__ENSG00000101825|ENST00000217939|MXRA5	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3099060058594	3	498.313797	1491.91956	-5.1129	-0.0025478	-2.7301	-0.0013604	-7.843	-0.0039083	498.3123780141879	160.35	1.8473	160.12	159.68	161.53	-0.22697					120	37	4	0	0	0	0.72568	1	16419	16419		6.6596	0.96083	1	150420	+		49317	17519	40892	40920	53060	53060					0.1932778881921422
RLRRTPTLGAA	11	Unmodified	_RLRRTPTLGAA_					0	0	0		ENST00000393539.6_1_16:71495855-71496077:-|nuORF	ENST00000393539.6_1_16:71495855-71496077:-|nuORF	ENST00000393539.6_1_16:71495855-71496077:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3697509765625	2	606.370195	1210.72584	-3.14	-0.001904	2.1543	0.0013063	-0.98567	-0.00059768	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.72479	1	14843	14843		18.262	1.5447	1	257720			49318	11249	40893	40921	53061	53061					0.12890394539795125
RLRRVRFNRHR	11	Unmodified	_RLRRVRFNRHR_					0	0	0		ENST00000345957.8_1_8:82752305-82754488:-|nuORF;ENST00000396330.6_1_8:82752600-82754488:-|nuORF	ENST00000345957.8_1_8:82752305-82754488:-|nuORF	ENST00000345957.8_1_8:82752305-82754488:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.31396484375	3	522.65393	1564.93996	-1.0574	-0.00055266	3.6428	0.0019039	2.5854	0.0013513	522.9901707329429	37.852	0.49345	37.852	37.621	38.114	0					18	10	2	0	0	0	0.026472	1	2092	2092		2.688	0	1	243840			49319	10625	40894	40922	53062	53062					0.1800895947906156
RLRTGPGQV	9	Unmodified	_RLRTGPGQV_					0	0	0		ENST00000595946.1_3_19:46283105-46288963:-|nuORF;ENST00000291270.8_1_19:46283105-46285629:-|nuORF;ENST00000596586.5_3_19:46283105-46288963:-|nuORF	ENST00000595946.1_3_19:46283105-46288963:-|nuORF	ENST00000595946.1_3_19:46283105-46288963:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.29095458984375	2	492.290882	982.567212	1.0342	0.00050911	-1.3373	-0.00065835	-0.30315	-0.00014924	492.29012268091446	33.667	1.6416	30.879	30.508	32.15	-2.7881					88	32	4	0	0	0	0.31747	1	938	938		60.972	3.1607	1	677830			49320	10094	40895	40923	53063	53063					0.07523100631510715
RLRTLPATV	9	Unmodified	_RLRTLPATV_					0	0	0		TEP1|p.P1636Cfs*29|1|0.07|ENSG00000129566|chr14:20380332-20380333|-/CA|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1	TEP1|p.P1636Cfs*29|1|0.07|ENSG00000129566|chr14:20380332-20380333|-/CA|frameshift_variant	TEP1|p.P1636Cfs*29|1|0.07|ENSG00000129566|chr14:20380332-20380333|-/CA|frameshift_variant	MSMS	OvCa9_classI_Rep2	2	513.8238525390625	2	513.824558	1025.63456	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.913	1	64.252	63.752	64.752	-2.661								0	0	0	0.18042	1	5207	5207		34.173	0	1				49321	3936	40896	40924	53064	53064					0.12277130842448969
RLRTPNQV	8	Unmodified	_RLRTPNQV_					0	0	0			REV__SOGA1-SAMHD1|2|fusion	REV__SOGA1-SAMHD1|2|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.29052734375	2	492.290882	982.567212	1.0342	0.00050911	-1.3373	-0.00065835	-0.30315	-0.00014924	492.29012268091446	33.667	1.6416	30.879	30.508	32.15	-2.7881					88	32	4	0	0	0	0.64026	1	962	962		55.504	0	1	677830	+		49322	29379	40897	40925	53065	53065					0.07523100631499346
RLRVLKVKE	9	Unmodified	_RLRVLKVKE_					0	0	0			REV__nc|ENSG00000092529|P20807-2|CAPN3	REV__nc|ENSG00000092529|P20807-2|CAPN3	MULTI-MSMS	OvCa99_classI_Rep5	1	570.88671875	2	570.882407	1139.75026	1.5707	0.0008967	1.4797	0.00084475	3.0504	0.0017414	571.3835704795658	126.88	2.236	126.88	126.46	128.7	0					102	48	3	0	0	0	0.65371	1	14743	14743		25.574	1.3713	1	1137500	+		49323	17270	40898	40926	53066	53066					0.18597654693303411
RLRVTVMLL	9	Unmodified	_RLRVTVMLL_					0	0	0		nc|ENSG00000025434|Q13133-2|NR1H3	nc|ENSG00000025434|Q13133-2|NR1H3	nc|ENSG00000025434|Q13133-2|NR1H3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.7271118164062	2	550.852261	1099.68997	-0.82183	-0.00045271	-4.1071	-0.0022624	-4.929	-0.0027151	550.8500271273173	120.84	0.71333	119.49	119.24	119.95	-1.3479					23	13	2	0	0	0	0.027462	1	11379	11379		55.504	22.692	1	24312			49324	14867	40899	40927	53067	53067					0.1441122103858561
RLRYPARAS	9	Unmodified	_RLRYPARAS_					0	0	0			REV__nc|ENSG00000168397|Q9Y4P1-2|ATG4B	REV__nc|ENSG00000168397|Q9Y4P1-2|ATG4B	MULTI-MSMS	OvCa9_classI_Rep3	3	545.31640625	2	545.317432	1088.62031	-2.8527	-0.0015556	1.4949	0.0008152	-1.3578	-0.00074042	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.64427	1	11839	11839		26.693	2.1737	1	337600	+		49325	28991	40900	40928	53068	53068					0.07954478414171717
RLSADTIDL	9	Unmodified	_RLSADTIDL_					0	0	0			REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B	REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.27655029296875	2	502.274564	1002.53457	-0.88603	-0.00044503	-0.11995	-6.0249E-05	-1.006	-0.00050528	502.2743814538115	79.525	1.6887	76.774	76.322	78.011	-2.7514					74	34	3	0	0	0	0.51865	1	6503	6503		40.778	0	1	1032500	+		49326	17199	40901	40929	53069	53069					0.033408487179940494
RLSDTLLFY	9	Unmodified	_RLSDTLLFY_					0	0	0		nc|ENSG00000178904|Q6ZPD9-2|DPY19L3;ENSG00000178904|ENST00000392250|DPY19L3	nc|ENSG00000178904|Q6ZPD9-2|DPY19L3	nc|ENSG00000178904|Q6ZPD9-2|DPY19L3	MULTI-MSMS	OvCa9_classI_Rep2	2	564.30810546875	2	564.308406	1126.60226	-0.64094	-0.00036169	0.38666	0.0002182	-0.25427	-0.00014349	564.3086346308005	121.22	1.0377	121.03	120.61	121.64	-0.19718					60	20	5	0	0	0	0.42676	1	11710	11710		49.442	4.9105	1	328140			49327	7784	40902	40930	53070	53070					0.04402298648801661
RLSELGYVR	9	Unmodified	_RLSELGYVR_					0	0	0			REV__INSRR|p.A1268Gfs*13|1|0.08|ENSG00000027644|chr1:156840964-156840965|-/C|frameshift_variant	REV__INSRR|p.A1268Gfs*13|1|0.08|ENSG00000027644|chr1:156840964-156840965|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	546.8106079101562	2	546.811648	1091.60874	-0.81654	-0.00044649	-0.31743	-0.00017357	-1.134	-0.00062007	546.8115392968579	78.277	5.424	75.924	75.402	80.825	-2.3527					239	107	5	0	0	0	0.35694	1	4269	4269		56.434	1.6575	1	6405800	+		49328	16574	40903	40931	53071	53071					0.06660236600191638
RLSEQLPLS	9	Unmodified	_RLSEQLPLS_					0	0	0			REV__ENST00000491763.1_1_3:156544517-156544577:+|nuORF	REV__ENST00000491763.1_1_3:156544517-156544577:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.8134765625	2	521.798206	1041.58186	-0.072536	-3.7849E-05	-4.2676	-0.0022268	-4.3401	-0.0022647	521.79794479812	74.058	1.366	72.087	71.273	72.639	-1.9711					43	25	2	0	0	0	0.027462	1	6085	6085		15.642	0	1	74358	+		49329	26682	40904	40932	53072	53072					0.06273127989015848
RLSEQLPLS	9	Unmodified	_RLSEQLPLS_					0	0	0			REV__ENST00000491763.1_1_3:156544517-156544577:+|nuORF	REV__ENST00000491763.1_1_3:156544517-156544577:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	521.798206	1041.58186	-0.39178	-0.00020443	0.25346	0.00013225	-0.13832	-7.2176E-05	521.7982489509012	74.569	0.64333	72.159	71.796	72.439	-2.4106	0.03584	0.00022596	NaN	15.642	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70316	+		49330	26682	40904	40932							0.06273127989015848
RLSFPKSKA	9	Unmodified	_RLSFPKSKA_					0	0	0		nc|ENSG00000133424|O95461-2|LARGE1;ENSG00000133424|ENST00000397394|LARGE1	nc|ENSG00000133424|O95461-2|LARGE1	nc|ENSG00000133424|O95461-2|LARGE1	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3110961914062	2	517.311284	1032.60801	0.010128	5.2392E-06	-0.21635	-0.00011192	-0.20622	-0.00010668	517.3110169376656	31.938	1.2365	29.228	28.986	30.222	-2.7097					60	24	4	0	0	0	0.5811	1	1038	1038		34.173	7.3764	1	305470			49331	4221	40905	40933	53073	53073					0.09301441951151901
RLSKSIIKH	9	Unmodified	_RLSKSIIKH_					0	0	0		AKAP11|p.D1747Mfs*9|1|0.11|ENSG00000023516|chr13:42308573-42308573|A/-|frameshift_variant;ENSG00000023516|ENST00000025301|AKAP11;AKAP11|p.S950A|1|0.21|ENSG00000023516|chr13:42301594-42301594|T/G|missense_variant	AKAP11|p.D1747Mfs*9|1|0.11|ENSG00000023516|chr13:42308573-42308573|A/-|frameshift_variant	AKAP11|p.D1747Mfs*9|1|0.11|ENSG00000023516|chr13:42308573-42308573|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	541.3453369140625	2	541.345658	1080.67676	-0.18719	-0.00010134	-1.1969	-0.00064794	-1.3841	-0.00074928	541.345222203672	81.441	1.5457	79.792	79.415	80.961	-1.6485					147	29	7	0	0	0	0.59259	1	6898	6898		32.812	1.2826	1	3232100			49332	54	40906	40934	53074	53074					0.13965106250861936
RLSKVLCLHGI	11	Unmodified	_RLSKVLCLHGI_					0	0	0			REV__ENST00000529068.5_1_11:10709162-10709285:-|nuORF	REV__ENST00000529068.5_1_11:10709162-10709285:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8690795898438	2	619.873725	1237.7329	-2.7857	-0.0017268	-4.1738	-0.0025872	-6.9595	-0.004314	619.8709153162803	147.4	3.9416	146.45	144.36	148.3	-0.9512					241	78	4	0	0	0	0.72466	1	12314	12314		19.997	2.6318	1	225770	+		49333	27184	40907	40935	53075	53075					0.12353991095983474
RLSLDINDL	9	Unmodified	_RLSLDINDL_					0	0	0			REV__ENSG00000164946|ENST00000380880|FREM1	REV__ENSG00000164946|ENST00000380880|FREM1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.7968139648438	2	529.795663	1057.57677	3.229	0.0017107	-1.6493	-0.00087382	1.5796	0.00083689	529.7940408594311	97.493	1.7045	97.493	96.543	98.247	0					73	39	3	0	0	0	0.27001	1	10694	10694		66.429	0	1	2200900	+		49334	21042	40908	40936	53076	53076					0.05028824126361542
RLSLMKTSAIK	11	Oxidation (M)	_RLSLM(Oxidation (M))KTSAIK_		RLSLM(1)KTSAIK		RLSLM(86)KTSAIK	0	0	1		COL16A1|p.Q400Rfs*61|1|0.11|ENSG00000084636|chr1:31692063-31692063|T/-|frameshift_variant;COL16A1|p.E98Gfs*116|1|0.14|ENSG00000084636|chr1:31698582-31698583|-/G|frameshift_variant;nc|ENSG00000084636|Q07092-2|COL16A1;ENSG00000084636|ENST00000373672|COL16A1	COL16A1|p.Q400Rfs*61|1|0.11|ENSG00000084636|chr1:31692063-31692063|T/-|frameshift_variant	COL16A1|p.Q400Rfs*61|1|0.11|ENSG00000084636|chr1:31692063-31692063|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	632.3755493164062	2	632.376297	1262.73804	-1.8152	-0.0011479	-1.0918	-0.00069043	-2.907	-0.0018383	632.3755521583494	84.187	2.0123	82.64	82.326	84.338	-1.5462					123	39	5	0	0	0	0.15616	1	7249	7249		85.862	10.819	1	596790			49335	593	40909	40937	53077	53077		15			0.1171825016792809
RLSLMKTSAIK	11	Oxidation (M)	_RLSLM(Oxidation (M))KTSAIK_		RLSLM(1)KTSAIK		RLSLM(78)KTSAIK	0	0	1		COL16A1|p.Q400Rfs*61|1|0.11|ENSG00000084636|chr1:31692063-31692063|T/-|frameshift_variant;COL16A1|p.E98Gfs*116|1|0.14|ENSG00000084636|chr1:31698582-31698583|-/G|frameshift_variant;nc|ENSG00000084636|Q07092-2|COL16A1;ENSG00000084636|ENST00000373672|COL16A1	COL16A1|p.Q400Rfs*61|1|0.11|ENSG00000084636|chr1:31692063-31692063|T/-|frameshift_variant	COL16A1|p.Q400Rfs*61|1|0.11|ENSG00000084636|chr1:31692063-31692063|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	632.375732421875	2	632.376297	1262.73804	-0.72971	-0.00046145	-2.3817	-0.0015061	-3.1114	-0.0019676	632.3747458095926	85.474	1.7513	83.253	82.888	84.64	-2.2204					110	34	5	0	0	0	0.21275	1	5029	5029		78.264	31.036	1	917210			49336	593	40909	40937	53078	53078		15			0.1171825016792809
RLSNLTISK	9	Unmodified	_RLSNLTISK_					0	0	0		ENST00000379847.3_9:32553693-32553735:-|nuORF	ENST00000379847.3_9:32553693-32553735:-|nuORF	ENST00000379847.3_9:32553693-32553735:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	516.3140258789062	2	516.314023	1030.61349	-0.5367	-0.00027711	-0.015158	-7.8264E-06	-0.55186	-0.00028493	516.3139526052413	29.809	1.196	29.809	29.486	30.682	0					55	23	4	0	0	0	0.35694	1	1092	1092		56.434	1.6575	1	870980			49337	11134	40910	40938	53079	53079					0.09941120742928433
RLSQEAGLDL	10	Unmodified	_RLSQEAGLDL_					0	0	0		tr|A0A553SKY6|A0A553SKY6_NIACIDihydrolipoamideacetyltransferasecomponentofpyruvatedehydrogenasecomplexOS=NialliacirculansOX=1397GN=CEQ21_19615PE=3SV=1	tr|A0A553SKY6|A0A553SKY6_NIACIDihydrolipoamideacetyltransferasecomponentofpyruvatedehydrogenasecomplexOS=NialliacirculansOX=1397GN=CEQ21_19615PE=3SV=1	tr|A0A553SKY6|A0A553SKY6_NIACIDihydrolipoamideacetyltransferasecomponentofpyruvatedehydrogenasecomplexOS=NialliacirculansOX=1397GN=CEQ21_19615PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	551.301513671875	2	551.29857	1100.58259	1.4681	0.00080935	4.4141	0.0024335	5.8822	0.0032429	551.3008705568828	115.15	3.1895	115.15	114.7	117.88	0					161	68	5	0	0	0	0.52439	1	13177	13177		51.193	1.6567	1	1919600			49338	33667	40911	40939	53080	53080					0.03631922638055585
RLSQRAPYW	9	Unmodified	_RLSQRAPYW_					0	0	0			REV__ENST00000594807.5_1_19:14640508-14674579:+|nuORF	REV__ENST00000594807.5_1_19:14640508-14674579:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	588.8199462890625	2	588.817264	1175.61998	-0.89638	-0.0005278	3.0273	0.0017825	2.131	0.0012547	588.8190198516028	73.646	2.497	70.25	69.543	72.04	-3.3961					118	51	4	0	0	0	0.42676	1	5753	5753		49.442	0	1	1375100	+		49339	17333	40912	40940	53081	53081					0.03919058694305022
RLSQSWRP	8	Unmodified	_RLSQSWRP_					0	0	0			REV__ENST00000524852.1_1_11:6340397-6340502:-|nuORF	REV__ENST00000524852.1_1_11:6340397-6340502:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	515.2861328125	2	515.283057	1028.55156	-0.93848	-0.00048358	-0.53622	-0.0002763	-1.4747	-0.00075989	515.28268388989	34.043	0.85927	34.043	33.632	34.491	0					36	17	3	0	0	0	0.61436	1	1615	1615		60.972	0	1	518060	+		49340	27106	40913	40941	53082	53082					0.038428141144549954
RLSQVSDSV	9	Unmodified	_RLSQVSDSV_					0	0	0		ENSG00000101161|ENST00000266079|PRPF6;nc|ENSG00000101161|O94906-2|PRPF6;PRPF6|p.R391Sfs*19|1|0.08|ENSG00000101161|chr20:64001224-64001231|CGGGTTCT/-|frameshift_variant	ENSG00000101161|ENST00000266079|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	MULTI-MSMS	OvCa99_classI_Rep5	1	495.76544189453125	2	495.764363	989.514173	-0.83793	-0.00041542	1.0859	0.00053836	0.24798	0.00012294	495.7647122506618	53.5	0.42656	53.5	53.347	53.774	0					22	9	3	0	0	0	0.40818	1	4262	4262		51.193	7.0759	1	934540			49341	2144	40914	40942	53083	53083					0.018996780581915118
RLSRAVEET	9	Unmodified	_RLSRAVEET_					0	0	0		ENSG00000188981|ENST00000438480|MSANTD1	ENSG00000188981|ENST00000438480|MSANTD1	ENSG00000188981|ENST00000438480|MSANTD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.7915649414062	2	530.790912	1059.56727	-1.2663	-0.00067215	1.3286	0.0007052	0.06227	3.3052E-05	530.7915034200339	63.449	1.012	59.974	59.723	60.735	-3.475					38	20	2	0	0	0	0.56189	1	4480	4480		36.447	2.9312	1	525570			49342	8521	40915	40943	53084	53084					0.03987055840843823
RLSRMKVTI	9	Unmodified	_RLSRMKVTI_					0	0	0			REV__tr|A0A7D6VM55|A0A7D6VM55_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13980PE=4SV=1	REV__tr|A0A7D6VM55|A0A7D6VM55_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13980PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	552.3386840820312	2	552.339518	1102.66448	2.319	0.0012808	-3.6668	-0.0020253	-1.3478	-0.00074445	552.3374622889943	84.321	0.66484	84.321	84.051	84.716	0					36	15	3	0	0	0	0.51865	1	8820	8820		40.778	0.71999	1	4379600	+		49343	31125	40916	40944	53085	53085					0.11725746516162872
RLSRRIISLL	10	Unmodified	_RLSRRIISLL_					0	0	0			REV__ENSG00000132382|ENST00000254718|MYBBP1A	REV__ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MSMS	OvCa9_classI_Rep2	2	409.6077880859375	3	409.606701	1225.79827	0.6889	0.00028218	2.4344	0.00099713	3.1233	0.0012793	409.60766459120623	104.29	12.102	103.72	103.28	115.38	-0.57639					699	244	5	0	0	0	0.67987	1	9877	9877		32.751	3.5805	1	1628000	+		49344	19073	40917	40945	53086	53086					0.19440728613380998
RLSRTLPA	8	Unmodified	_RLSRTLPA_					0	0	0		ENSG00000180921|ENST00000388913|FAM83H	ENSG00000180921|ENST00000388913|FAM83H	ENSG00000180921|ENST00000388913|FAM83H	MULTI-MSMS	OvCa9_classI_Rep4_	4	457.2834777832031	2	457.282526	912.550499	0.26034	0.00011905	-0.65608	-0.00030001	-0.39574	-0.00018096	457.2821433033136	59.467	2.2271	56.075	55.655	57.882	-3.392					117	44	5	0	0	0	0.73626	1	4005	4005		33.516	0	1	1427100			49345	7901	40918	40946	53087	53087					0.09072599745547905
RLSRTVPIV	9	Unmodified	_RLSRTVPIV_					0	0	0			REV__ENST00000521903.5_1_8:124361561-124413087:-|nuORF;REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF	REV__ENST00000521903.5_1_8:124361561-124413087:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.8134765625	2	520.832383	1039.65021	-0.043445	-2.2627E-05	-0.54061	-0.00028157	-0.58405	-0.00030419	520.831885733303	73.694	1.1562	71.294	71.001	72.158	-2.3999					42	21	3	0	0	0	0.027462	1	6085	6085		19.104	0	1	116460	+		49346	20495;27016	40919	40947	53088	53088					0.13197417359492647
RLSSKALLE	9	Unmodified	_RLSSKALLE_					0	0	0		ENSG00000141314|ENST00000269051|RHBDL3;nc|ENSG00000141314|P58872-3|RHBDL3;nc|ENSG00000141314|P58872-2|RHBDL3	ENSG00000141314|ENST00000269051|RHBDL3	ENSG00000141314|ENST00000269051|RHBDL3	MULTI-MSMS	OvCa9_classI_Rep2	2	508.8081359863281	2	508.808574	1015.60259	-1.1049	-0.00056221	0.50065	0.00025473	-0.6043	-0.00030747	508.8087276313577	60.665	1.7306	57.895	57.396	59.126	-2.7702					90	32	4	0	0	0	0.10421	2	4481	4475;4481		96.034	10.172	1	689010			49347	4904	40920	40948	53089;53090	53090					0.09541718368654983
RLSSKALLE	9	Unmodified	_RLSSKALLE_					0	0	0		ENSG00000141314|ENST00000269051|RHBDL3;nc|ENSG00000141314|P58872-3|RHBDL3;nc|ENSG00000141314|P58872-2|RHBDL3	ENSG00000141314|ENST00000269051|RHBDL3	ENSG00000141314|ENST00000269051|RHBDL3	MULTI-MATCH	OvCa99_classI_Rep5	1		2	508.808574	1015.60259	0.28274	0.00014386	0.073891	3.7596E-05	0.35664	0.00018146	508.80822629347364	57.88	0.20865	57.88	57.775	57.984	0	-0.057593	1.6676E-05	NaN	96.034	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55494			49348	4904	40920	40948							0.09541718368654983
RLSSLLRQLGG	11	Unmodified	_RLSSLLRQLGG_					0	0	0			REV__ENSG00000178184|ENST00000353265|PARD6G	REV__ENSG00000178184|ENST00000353265|PARD6G	MULTI-SECPEP	OvCa99_classI_Rep5	1	599.367919921875	2	600.364579	1198.7146	-0.631	-0.00037883	-0.32838	-0.00019715	-0.95938	-0.00057598	600.3644179366494	28.271	0.29892	28.271	28.14	28.439	0					12	5	3	0	0	0	0.026132	1	905	905		11.636	0	1	105030	+		49349	22048	40921	40949	53091	53091					0.12319572445630911
RLSVPLWR	8	Unmodified	_RLSVPLWR_					0	0	0			REV__ENSG00000204347|ENST00000375366|BTBD17	REV__ENSG00000204347|ENST00000375366|BTBD17	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.2679443359375	2	513.813993	1025.61343	2.0036	0.0010295	-0.65656	-0.00033735	1.347	0.00069212	513.8137554579102	82.315	0.4603	82.315	82.061	82.522	0					15	10	2	0	0	0	0.028476	1	8542	8542		29.15	0	1	109200	+		49350	23146	40922	40950	53092	53092					0.1016516553358997
RLTAILLQI	9	Unmodified	_RLTAILLQI_					0	0	0		nc|ENSG00000183814|Q5TKA1-3|LIN9;ENSG00000183814|ENST00000681046|LIN9;nc|ENSG00000183814|Q5TKA1-2|LIN9	nc|ENSG00000183814|Q5TKA1-3|LIN9	nc|ENSG00000183814|Q5TKA1-3|LIN9	MULTI-MSMS	OvCa99_classI_Rep5	1	520.8463745117188	2	520.844959	1039.67537	1.9334	0.001007	0.84622	0.00044075	2.7796	0.0014477	520.8452258882148	94.8	0.55814	94.8	94.56	95.119	0					28	12	3	0	0	0	0.27001	1	10339	10339		66.429	5.4573	1	952200			49351	8111	40923	40951	53093	53093					0.15711472162092832
RLTDPRGAQAH	11	Unmodified	_RLTDPRGAQAH_					0	0	0		nc|ENSG00000204991|Q8WWL2-4|SPIRE2;nc|ENSG00000204991|Q8WWL2-3|SPIRE2;nc|ENSG00000204991|Q8WWL2-2|SPIRE2;ENST00000569108.5_1_16:89916567-89936677:+|nuORF;ENSG00000204991|ENST00000378247|SPIRE2	nc|ENSG00000204991|Q8WWL2-4|SPIRE2	nc|ENSG00000204991|Q8WWL2-4|SPIRE2	MULTI-MSMS	OvCa99_classI_Rep5	1	611.3292846679688	2	611.325985	1220.63742	-0.95886	-0.00058618	1.4647	0.00089542	0.50585	0.00030924	611.3269846896409	69.935	0.45784	69.935	69.712	70.17	0					26	10	3	0	0	0	0.68757	1	6685	6685		33.922	2.3918	1	1025500			49352	9044	40924	40952	53094	53094					0.03592354229317607
RLTFRDETSN	10	Unmodified	_RLTFRDETSN_					0	0	0			REV__TMEM132D|p.K948Tfs*15|1|0.06|ENSG00000151952|chr12:129074331-129074332|TT/-|frameshift_variant	REV__TMEM132D|p.K948Tfs*15|1|0.06|ENSG00000151952|chr12:129074331-129074332|TT/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	413.544921875	3	413.542314	1237.60511	1.0008	0.00041387	2.4345	0.0010068	3.4353	0.0014207	413.5432646980665	62.561	0.88391	62.561	62.335	63.219	0					58	21	4	0	0	0	0.50999	1	5569	5569		48.602	0	1	4747200	+		49353	20265	40925	40953	53095	53095					-0.004184779643082948
RLTIKTDFI	9	Unmodified	_RLTIKTDFI_					0	0	0		tr|A0A553SFC3|A0A553SFC3_NIACISortaseBprotein-sortingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_08635PE=4SV=1	tr|A0A553SFC3|A0A553SFC3_NIACISortaseBprotein-sortingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_08635PE=4SV=1	tr|A0A553SFC3|A0A553SFC3_NIACISortaseBprotein-sortingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_08635PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	554.823486328125	2	553.832049	1105.64954	-0.20142	-0.00011155	-0.65562	-0.0003631	-0.85704	-0.00047466	553.8315699562067	100.18	0.89279	99.353	99.113	100.01	-0.83052					35	17	3	0	0	0	0.027462	1	9198	9198		23.042	8.1776	1	38361			49354	33023	40926	40954	53096	53096					0.10094577919790026
RLTKLGKH	8	Unmodified	_RLTKLGKH_					0	0	0			REV__ENSG00000047365|ENST00000303965|ARAP2	REV__ENSG00000047365|ENST00000303965|ARAP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.8057861328125	2	476.806168	951.597784	-0.54019	-0.00025756	-0.3732	-0.00017794	-0.91338	-0.00043551	476.80595009891266	41.29	1.8569	38.309	37.918	39.775	-2.9804					79	35	3	0	0	0	0.73766	1	1888	1888		32.812	0.85756	1	1153600	+		49355	16655	40927	40955	53097	53097					0.12004879016558334
RLTKSGAKVV	10	Unmodified	_RLTKSGAKVV_					0	0	0		tr|A0A553SMX0|A0A553SMX0_NIACIPhospholipaseOS=NialliacirculansOX=1397GN=CEQ21_23345PE=4SV=1	tr|A0A553SMX0|A0A553SMX0_NIACIPhospholipaseOS=NialliacirculansOX=1397GN=CEQ21_23345PE=4SV=1	tr|A0A553SMX0|A0A553SMX0_NIACIPhospholipaseOS=NialliacirculansOX=1397GN=CEQ21_23345PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8154296875	2	529.837665	1057.66078	-0.24324	-0.00012888	3.2437	0.0017186	3.0005	0.0015898	530.3422660869672	51.525	0.21188	51.525	51.332	51.544	0					7	4	2	0	0	0	0.02663	1	3982	3982		51.193	0	1	116280			49356	33878	40928	40956	53098	53098					0.13425400013943545
RLTKYPLLL	9	Unmodified	_RLTKYPLLL_					0	0	0		nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12;ENST00000529970.5_1_11:120278459-120348246:+|nuORF;ENST00000461678.1_1_1:156915777-156917159:-|nuORF;nc|ENSG00000171680|O94827-4|PLEKHG5;ENSG00000171680|ENST00000377728|PLEKHG5;nc|ENSG00000171680|O94827-3|PLEKHG5;nc|ENSG00000171680|O94827-7|PLEKHG5;CCT3-ARHGEF11|1|fusion;nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11;ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1;ENST00000595897.5_1_19:42402462-42407822:+|nuORF	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;CCT3-ARHGEF11|1|fusion;ENST00000600274.5_1_19:42396347-42410935:+|nuORF	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	MULTI-MSMS	OvCa99_classI_Rep5	1	558.861572265625	2	558.860609	1115.70667	2.0917	0.001169	0.1499	8.3775E-05	2.2416	0.0012527	558.8605653514277	93.201	0.99605	93.201	92.803	93.799	0					54	23	4	0	0	0	0.40818	1	10088	10088		51.193	0	1	1907400			49357	8658;1560;202	40929	40957	53099	53099					0.15344045196184197
RLTLQDRI	8	Unmodified	_RLTLQDRI_					0	0	0		ENST00000563542.5_1_15:72185266-72338904:-|nuORF;MYO9A|p.E2496Lfs*8|1|0.27|ENSG00000066933|chr15:71826741-71826742|-/AA|frameshift_variant;MYO9A|p.E2496Tfs*17|1|0.24|ENSG00000066933|chr15:71826742-71826743|-/ACCCACCTTTGGGAAGGGAAAAGAGGGTG|frameshift_variant;nc|ENSG00000066933|B2RTY4-2|MYO9A;ENSG00000066933|ENST00000356056|MYO9A;nc|ENSG00000066933|B2RTY4-4|MYO9A;nc|ENSG00000066933|B2RTY4-5|MYO9A	ENST00000563542.5_1_15:72185266-72338904:-|nuORF	ENST00000563542.5_1_15:72185266-72338904:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3287048339844	2	507.806365	1013.59818	0.030444	1.5459E-05	-2.1832	-0.0011086	-2.1527	-0.0010932	507.80555158804026	65.159	0.67651	65.159	64.75	65.426	0					20	16	2	0	0	0	0.028476	1	5974	5974		56.721	5.3856	1	116980			49358	1362	40930	40958	53100	53100					0.09192253945752782
RLTLQILAR	9	Unmodified	_RLTLQILAR_					0	0	0		nc|ENSG00000135775|Q14746-2|COG2;ENSG00000135775|ENST00000366669|COG2	nc|ENSG00000135775|Q14746-2|COG2	nc|ENSG00000135775|Q14746-2|COG2	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.7998657226562	2	542.353483	1082.69241	-0.1053	-5.711E-05	-0.27679	-0.00015012	-0.38209	-0.00020723	542.3532654497772	51.237	0.50855	51.237	51.036	51.544	0					23	11	3	0	0	0	0.027462	1	3935	3935		35.618	0	1	343640			49359	4414	40931	40959	53101	53101					0.1543739276787619
RLTPDVSGVL	10	Unmodified	_RLTPDVSGVL_					0	0	0			REV__nc|ENSG00000108840|Q9UQL6-2|HDAC5	REV__nc|ENSG00000108840|Q9UQL6-2|HDAC5	MULTI-MSMS	OvCa9_classI_Rep2	2	529.3046264648438	2	528.806031	1055.59751	-1.2413	-0.00065642	-1.9712	-0.0010424	-3.2125	-0.0016988	529.3059963064875	103.84	3.275	103.27	102.83	106.11	-0.57639					87	65	2	0	0	0	0.52439	1	9600	9600		51.193	1.7511	1	765080	+		49360	17907	40932	40960	53102	53102					0.07193414506036788
RLTPEEKIL	9	Unmodified	_RLTPEEKIL_					0	0	0			REV__tr|A0A7D6ZZV7|A0A7D6ZZV7_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_07680PE=4SV=1	REV__tr|A0A7D6ZZV7|A0A7D6ZZV7_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_07680PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	549.8289794921875	2	549.829506	1097.64446	0.80067	0.00044023	-1.6255	-0.00089376	-0.82486	-0.00045353	549.8286388284898	82.164	4.5681	80.515	79.767	84.335	-1.6485					186	90	5	0	0	0	0.16562	1	7044	7044		82.241	0	1	3206100	+		49361	32425	40933	40961	53103	53103					0.0995427405719056
RLTPQAVKI	9	Unmodified	_RLTPQAVKI_					0	0	0		ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	ENSG00000134001|ENST00000256383|EIF2S1	MULTI-MSMS	OvCa99_classI_Rep5	1	513.3277587890625	2	513.326934	1024.63931	-0.474	-0.00024332	0.38057	0.00019536	-0.093435	-4.7963E-05	513.3270169094706	64.438	0.66412	64.438	64.17	64.834	0					28	15	2	0	0	0	0.1944	1	5850	5850		77.318	5.4401	1	4302000			49362	4249	40934	40962	53104	53104					0.12798014985219197
RLTRASGLS	9	Unmodified	_RLTRASGLS_					0	0	0			REV__ENST00000497070.1_1_3:184055391-184056524:+|nuORF	REV__ENST00000497070.1_1_3:184055391-184056524:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	480.7826232910156	2	480.78289	959.551228	-1.0055	-0.00048344	0.35437	0.00017038	-0.65115	-0.00031306	480.7829878496556	48.434	1.9358	45.674	45.23	47.166	-2.7603					133	38	6	0	0	0	0.53483	1	3015	3015		39.253	0.44669	1	1103900	+		49363	21877	40935	40963	53105	53105					0.06983394394615061
RLTRPRPIN	9	Unmodified	_RLTRPRPIN_					0	0	0			REV__ENST00000530490.1_1_11:17035717-17073753:+|nuORF	REV__ENST00000530490.1_1_11:17035717-17073753:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	561.8453369140625	2	561.846356	1121.67816	-5.3491	-0.0030054	4.1205	0.0023151	-1.2287	-0.00069032	561.8485776281088	152.58	1.5019	151.61	151.19	152.7	-0.97299					81	30	4	0	0	0	0.69123	1	13016	13016		20.947	0.95016	1	218830	+		49364	27203	40936	40964	53106	53106					0.12218740339608303
RLTRSLRR	8	Unmodified	_RLTRSLRR_					0	0	0		nc|ENSG00000085382|Q8IYU2-4|HACE1;ENSG00000085382|ENST00000262903|HACE1	nc|ENSG00000085382|Q8IYU2-4|HACE1	nc|ENSG00000085382|Q8IYU2-4|HACE1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.7991943359375	2	529.338698	1056.66284	-0.088932	-4.7075E-05	2.5538	0.0013518	2.4649	0.0013048	529.3400397895163	37.628	0.4991	34.736	34.641	35.14	-2.8925					11	9	2	0	0	0	0.028476	1	1395	1395		15.642	0	1	10757			49365	1727	40937	40965	53107	53107					0.13677873542405905
RLTVHQRT	8	Unmodified	_RLTVHQRT_					0	0	0		ENSG00000227124|ENST00000652011|ZNF717	ENSG00000227124|ENST00000652011|ZNF717	ENSG00000227124|ENST00000652011|ZNF717	MULTI-MSMS	OvCa99_classI_Rep5	1	505.7994079589844	2	505.796332	1009.57811	-0.43985	-0.00022248	0.19538	9.8822E-05	-0.24447	-0.00012365	505.7961324056165	35.972	0.73483	35.972	35.753	36.487	0					39	15	4	0	0	0	0.68714	1	1858	1858		45.952	0	1	1236600			49366	9277	40938	40966	53108	53108					0.07370503005790852
RLTWLVSL	8	Unmodified	_RLTWLVSL_					0	0	0		ENSG00000106605|ENST00000265523|BLVRA	ENSG00000106605|ENST00000265523|BLVRA	ENSG00000106605|ENST00000265523|BLVRA	MULTI-MSMS	OvCa9_classI_Rep3	3	494.300537109375	2	494.302927	986.591301	-5.5844	-0.0027604	1.3123	0.0006487	-4.2721	-0.0021117	494.3034903870968	153.96	1.4815	152.95	152.62	154.1	-1.0076					78	30	5	0	0	0	0.75991	1	13241	13241		21.702	2.3424	1	602630			49367	2564	40939	40967	53109	53109					0.09746941065179726
RLTWSELFV	9	Unmodified	_RLTWSELFV_					0	0	0		nc|ENSG00000185551|P24468-3|NR2F2;nc|ENSG00000185551|P24468-2|NR2F2;NR2F2|p.K316Tfs*5|1|0.23|ENSG00000185551|chr15:96334579-96334580|-/CCTGG|frameshift_variant;NR2F2|p.A317Rfs*21|1|0.19|ENSG00000185551|chr15:96334580-96334581|-/GCGAGCTGTTTGTGTTGAATGC|frameshift_variant;ENSG00000185551|ENST00000394166|NR2F2;ENSG00000175745|ENST00000327111|NR2F1	nc|ENSG00000185551|P24468-3|NR2F2	nc|ENSG00000185551|P24468-3|NR2F2	MULTI-MSMS	OvCa9_classI_Rep3	3	575.818603515625	2	575.816399	1149.61824	-1.9285	-0.0011104	4.3442	0.0025015	2.4158	0.001391	575.8188169351997	93.294	2.0645	91.332	90.932	92.997	-1.9617					117	40	4	0	0	0	0.31747	1	5993	5993		60.972	0.85368	1	923250			49368	7561	40940	40968	53110	53110					0.04942004885674578
RLTYASPIV	9	Unmodified	_RLTYASPIV_					0	0	0			REV__ENSG00000092148|ENST00000399332|HECTD1	REV__ENSG00000092148|ENST00000399332|HECTD1	MULTI-SECPEP	OvCa9_classI_Rep2	2	509.8046569824219	2	510.297842	1018.58113	0.398	0.0002031	-0.43416	-0.00022155	-0.036159	-1.8452E-05	510.2974665746093	112.03	0.93652	111.89	111.47	112.41	-0.13961					28	18	3	0	0	0	0.027461	1	10554	10554		40.778	0	1	100730	+		49369	17263	40941	40969	53111	53111					0.07258333339950696
RLTYPRAVVF	10	Unmodified	_RLTYPRAVVF_					0	0	0		POMT1|p.V470Efs*15|1|0.06|ENSG00000130714|chr9:131518514-131518515|GT/-|frameshift_variant;ENSG00000130714|ENST00000402686|POMT1;nc|ENSG00000130714|Q9Y6A1|POMT1	POMT1|p.V470Efs*15|1|0.06|ENSG00000130714|chr9:131518514-131518515|GT/-|frameshift_variant	POMT1|p.V470Efs*15|1|0.06|ENSG00000130714|chr9:131518514-131518515|GT/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	611.3551635742188	2	611.358765	1220.70298	-3.7398	-0.0022864	-0.61625	-0.00037675	-4.3561	-0.0026631	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.79917	1	15280	15280		19.104	4.2386	1	331570			49370	4004	40942	40970	53112	53112					0.10145375422303005
RLVAYLAVN	9	Unmodified	_RLVAYLAVN_					0	0	0			REV__ENSG00000278685|ENST00000615129|IQCA1L	REV__ENSG00000278685|ENST00000615129|IQCA1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.8313293457031	2	509.805834	1017.59712	0.11475	5.85E-05	3.9016	0.001989	4.0163	0.0020475	509.8075425038568	73.698	0.39181	73.698	73.4	73.792	0					17	9	2	0	0	0	0.027448	1	7226	7226		63.306	22.528	1	474790	+		49371	23645	40943	40971	53113	53113					0.08902039576832976
RLVCHPRSH	9	Unmodified	_RLVCHPRSH_					0	0	0			REV__ENST00000469614.1_1_7:4828357-4829561:+|nuORF	REV__ENST00000469614.1_1_7:4828357-4829561:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.8244018554688	2	552.795809	1103.57707	1.7678	0.00097725	1.1058	0.00061131	2.8737	0.0015886	552.7961402082375	87.318	0.65613	87.318	86.972	87.628	0					23	15	2	0	0	0	0.027453	1	9262	9262		37.812	7.3079	1	688260	+		49372	26247	40944	40972	53114	53114					0.029419653652439592
RLVCLRWKELV	11	Unmodified	_RLVCLRWKELV_					0	0	0		ENST00000471501.1_1_1:11709834-11710766:-|nuORF;ENSG00000116661|ENST00000354287|FBXO2;ENST00000466919.1_1_1:11710000-11714093:-|nuORF	ENST00000471501.1_1_1:11709834-11710766:-|nuORF	ENST00000471501.1_1_1:11709834-11710766:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.28033447265625	3	472.28323	1413.82786	-0.088608	-4.1848E-05	-0.87886	-0.00041507	-0.96747	-0.00045692	472.2826468257333	73.189	0.80232	73.189	72.915	73.717	0					56	19	4	0	0	0	0.025995	1	7145	7145		23.378	0	1	5950500			49373	3191	40945	40973	53115	53115					0.13749924567173366
RLVCRAES	8	Unmodified	_RLVCRAES_					0	0	0			REV__sp|Q6SVZ5|US11_HCMVMMembraneglycoproteinUS11OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US11PE=2SV=1	REV__sp|Q6SVZ5|US11_HCMVMMembraneglycoproteinUS11OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US11PE=2SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.23699951171875	2	467.250369	932.486184	-0.29041	-0.00013569	-3.2035	-0.0014968	-3.4939	-0.0016325	467.2486722364277	41.319	0.35843	41.319	41.104	41.462	0					13	7	3	0	0	0	0.028476	1	2552	2552		18.324	0	1	78155	+		49374	29420	40946	40974	53116	53116					0.017240765970996108
RLVDLDWRV	9	Unmodified	_RLVDLDWRV_					0	0	0		nc|ENSG00000110442|Q9P000-2|COMMD9;ENSG00000110442|ENST00000263401|COMMD9	nc|ENSG00000110442|Q9P000-2|COMMD9	nc|ENSG00000110442|Q9P000-2|COMMD9	MULTI-MSMS	OvCa99_classI_Rep5	1	586.334228515625	2	586.332747	1170.65094	-1.5665	-0.00091852	-1.0269	-0.00060213	-2.5935	-0.0015206	586.3321131678058	103.71	1.1515	103.71	103.39	104.54	0					48	26	2	0	0	0	0.23241	1	11602	11602		70.816	1.9701	1	6562800			49375	2777	40947	40975	53117	53117					0.07244212008527029
RLVEDMENKI	10	Unmodified	_RLVEDMENKI_					0	0	0		ENSG00000077549|ENST00000264202|CAPZB;nc|ENSG00000077549|P47756-1|CAPZB;ZCCHC17-CAPZB|1|fusion;ZCCHC17-CAPZB|2|fusion	ENSG00000077549|ENST00000264202|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	MULTI-MSMS	OvCa99_classI_Rep5	1	623.8369140625	2	623.826637	1245.63872	0.03206	2E-05	0.094052	5.8672E-05	0.12611	7.8672E-05	623.8264046687892	72.797	0.74347	72.797	72.492	73.235	0					38	18	3	0	0	0	0.065922	2	7099	7099;7110		123.21	21.955	1	4786800			49376	1576	40948	40976	53118;53119	53118					0.025728074831931735
RLVEIQYEL	9	Unmodified	_RLVEIQYEL_					0	0	0		ENST00000551455.5_1_12:110388962-110434038:-|nuORF;nc|ENSG00000139436|Q14161-2|GIT2;nc|ENSG00000139436|Q14161-11|GIT2;nc|ENSG00000139436|Q14161-7|GIT2;nc|ENSG00000139436|Q14161-9|GIT2;nc|ENSG00000139436|Q14161-6|GIT2;nc|ENSG00000139436|Q14161-10|GIT2;nc|ENSG00000139436|Q14161-8|GIT2;nc|ENSG00000139436|Q14161-4|GIT2;nc|ENSG00000139436|Q14161-5|GIT2;nc|ENSG00000139436|Q14161-3|GIT2;ENSG00000139436|ENST00000355312|GIT2	ENST00000551455.5_1_12:110388962-110434038:-|nuORF	ENST00000551455.5_1_12:110388962-110434038:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	581.82861328125	2	581.826963	1161.63937	1.8515	0.0010773	0.47193	0.00027458	2.3234	0.0013518	581.827168627224	106.08	0.97025	106.08	105.79	106.76	0					63	21	4	0	0	0	0.047422	2	11939	11916;11939		120.31	29.604	1	7033300			49377	4775	40949	40977	53120;53121	53121					0.06501970194563
RLVEIQYEL	9	Unmodified	_RLVEIQYEL_					0	0	0		ENST00000551455.5_1_12:110388962-110434038:-|nuORF;nc|ENSG00000139436|Q14161-2|GIT2;nc|ENSG00000139436|Q14161-11|GIT2;nc|ENSG00000139436|Q14161-7|GIT2;nc|ENSG00000139436|Q14161-9|GIT2;nc|ENSG00000139436|Q14161-6|GIT2;nc|ENSG00000139436|Q14161-10|GIT2;nc|ENSG00000139436|Q14161-8|GIT2;nc|ENSG00000139436|Q14161-4|GIT2;nc|ENSG00000139436|Q14161-5|GIT2;nc|ENSG00000139436|Q14161-3|GIT2;ENSG00000139436|ENST00000355312|GIT2	ENST00000551455.5_1_12:110388962-110434038:-|nuORF	ENST00000551455.5_1_12:110388962-110434038:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	581.826963	1161.63937	-0.29377	-0.00017092	2.4848	0.0014457	2.191	0.0012748	582.3310514132141	106.71	0.99213	106.4	106.08	107.07	-0.30837	0.15816	0.0023063	NaN	120.31	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35313			49378	4775	40949	40977							0.06501970194563
RLVEKWTE	8	Unmodified	_RLVEKWTE_					0	0	0			REV__ENST00000216019.11_1_22:38891033-38891845:-|nuORF	REV__ENST00000216019.11_1_22:38891033-38891845:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	530.7916259765625	2	530.792924	1059.57129	-2.5847	-0.0013719	-1.1874	-0.00063026	-3.7721	-0.0020022	530.7922153115414	62.531	1.6878	59.777	59.093	60.781	-2.7541					56	32	2	0	0	0	0.72896	1	4687	4687		37.159	1.5408	1	272960	+		49379	23713	40950	40978	53122	53122					0.04389145334539535
RLVERLER	8	Unmodified	_RLVERLER_					0	0	0			REV__ENST00000491786.5_1_2:47205894-47301059:+|nuORF	REV__ENST00000491786.5_1_2:47205894-47301059:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.7662353515625	2	535.825089	1069.63563	-0.32245	-0.00017277	-2.186	-0.0011713	-2.5084	-0.0013441	535.8250357807968	48.854	0.79304	48.854	48.412	49.206	0					31	17	3	0	0	0	0.028476	1	3623	3623		35.618	7.736	1	632080	+		49380	16856	40951	40979	53123	53123					0.10359345211372784
RLVFRVNIMRK	11	Unmodified	_RLVFRVNIMRK_					0	0	0		nc|ENSG00000102908|O94916-2|NFAT5;nc|ENSG00000102908|O94916|NFAT5;nc|ENSG00000102908|O94916-4|NFAT5;ENSG00000102908|ENST00000349945|NFAT5	nc|ENSG00000102908|O94916-2|NFAT5	nc|ENSG00000102908|O94916-2|NFAT5	MULTI-MSMS	OvCa9_classI_Rep3	3	477.9587097167969	3	477.962491	1430.86564	-6.0552	-0.0028941	-0.74227	-0.00035478	-6.7975	-0.0032489	477.9617916951061	159.06	2.5663	157.8	156.71	159.28	-1.267					138	56	4	0	0	0	0.72548	1	13741	13741		9.2118	2.8909	1	60373			49381	2267	40952	40980	53124	53124					0.16744435552641335
RLVFWRKKWNR	11	Unmodified	_RLVFWRKKWNR_					0	0	0			REV__ENSG00000145555|ENST00000513610|MYO10	REV__ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	OvCa99_classI_Rep5	1	530.6494140625	3	530.316033	1587.92627	0.13549	7.1854E-05	-3.6457	-0.0019334	-3.5103	-0.0018615	530.3140377729728	20.477	0.29605	20.477	20.352	20.648	0					29	10	4	0	0	0	0.72582	1	39	39		1.523	1.1516	1	113150	+		49382	19968	40953	40981	53125	53125					0.15582288927248555
RLVGQASKP	9	Unmodified	_RLVGQASKP_					0	0	0		ENST00000367595.3_1_1:180471306-180471588:-|nuORF	ENST00000367595.3_1_1:180471306-180471588:-|nuORF	ENST00000367595.3_1_1:180471306-180471588:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	478.2887268066406	2	478.287808	954.561064	0.78998	0.00037784	-1.2246	-0.00058573	-0.43466	-0.00020789	478.2871405717298	29.971	0.49033	27.261	27.017	27.508	-2.7097					16	9	2	0	0	0	0.68424	1	793	793		21.96	4.5949	1	20372			49383	10850	40954	40982	53126	53126					0.0819658239997807
RLVGRGGRR	9	Unmodified	_RLVGRGGRR_					0	0	0		ENSG00000166963|ENST00000300231|MAP1A;nc|ENSG00000166963|P78559-2|MAP1A	ENSG00000166963|ENST00000300231|MAP1A	ENSG00000166963|ENST00000300231|MAP1A	MSMS	OvCa9_classI_Rep2	2	513.8241577148438	2	513.823215	1025.63188	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.147	1	64.486	63.986	64.986	-2.661								0	0	0	0.17317	1	5235	5235		44.117	1.7207	1				49384	6741	40955	40983	53127	53127					0.12008720228163838
RLVHNEFFRR	10	Unmodified	_RLVHNEFFRR_					0	0	0		nc|ENSG00000143127|O75578-3|ITGA10;ENSG00000143127|ENST00000369304|ITGA10	nc|ENSG00000143127|O75578-3|ITGA10	nc|ENSG00000143127|O75578-3|ITGA10	MULTI-MSMS	OvCa9_classI_Rep2	2	458.58966064453125	3	458.589822	1372.74764	-0.52575	-0.0002411	0.26085	0.00011962	-0.2649	-0.00012148	458.5898478189458	54.048	2.6368	51.234	50.578	53.215	-2.8139					132	52	4	0	0	0	0.69928	1	3678	3678		30.569	1.3239	1	257930			49385	5012	40956	40984	53128	53128					0.07617199288347365
RLVKEGRFV	9	Unmodified	_RLVKEGRFV_					0	0	0		ENSG00000196850|ENST00000354300|PPTC7	ENSG00000196850|ENST00000354300|PPTC7	ENSG00000196850|ENST00000354300|PPTC7	MULTI-MSMS	OvCa99_classI_Rep5	1	552.3397216796875	2	552.337833	1102.66111	3.5532	0.0019626	-2.0947	-0.001157	1.4586	0.00080562	552.3370650907057	88.215	1.1308	88.215	87.712	88.843	0					60	26	4	0	0	0	0.53483	1	9391	9391		39.253	3.6345	1	3201200			49386	8653	40957	40985	53129	53129					0.11388819733792843
RLVLLAGGSLE	11	Unmodified	_RLVLLAGGSLE_					0	0	0		NEO1-YWHAE|1|fusion;NEO1-THSD4|1|fusion;NEO1|p.G1147Afs*12|1|0.06|ENSG00000067141|chr15:73288341-73288341|G/-|frameshift_variant;nc|ENSG00000067141|Q92859-3|NEO1;nc|ENSG00000067141|Q92859-2|NEO1;nc|ENSG00000067141|Q92859-4|NEO1;ENSG00000067141|ENST00000261908|NEO1	NEO1-YWHAE|1|fusion;NEO1|p.G1147Afs*12|1|0.06|ENSG00000067141|chr15:73288341-73288341|G/-|frameshift_variant	NEO1-YWHAE|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.8228149414062	2	564.342781	1126.67101	1.1514	0.00064976	-2.3283	-0.0013139	-1.1769	-0.00066417	564.3413252807509	78.151	0.67714	75.334	75.018	75.696	-2.8165					28	13	3	0	0	0	0.025528	1	6286	6286		42.864	7.246	1	73511			49387	15425;1367	40958	40986	53130	53130					0.11273962948507688
RLVLLAGGSLE	11	Unmodified	_RLVLLAGGSLE_					0	0	0		NEO1-YWHAE|1|fusion;NEO1-THSD4|1|fusion;NEO1|p.G1147Afs*12|1|0.06|ENSG00000067141|chr15:73288341-73288341|G/-|frameshift_variant;nc|ENSG00000067141|Q92859-3|NEO1;nc|ENSG00000067141|Q92859-2|NEO1;nc|ENSG00000067141|Q92859-4|NEO1;ENSG00000067141|ENST00000261908|NEO1	NEO1-YWHAE|1|fusion;NEO1|p.G1147Afs*12|1|0.06|ENSG00000067141|chr15:73288341-73288341|G/-|frameshift_variant	NEO1-YWHAE|1|fusion	MULTI-MATCH	OvCa99_classI_Rep5	1		2	564.342781	1126.67101	2.959	0.0016699	-1.5732	-0.00088782	1.3858	0.00078209	564.3417505114327	75.204	0.52049	75.204	74.962	75.482	0	-0.016639	0.0003574	NaN	42.864	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1130700			49388	15425;1367	40958	40986							0.11273962948507688
RLVLPRLALPV	11	Unmodified	_RLVLPRLALPV_					0	0	0		nc|ENSG00000008710|P98161-2|PKD1;nc|ENSG00000008710|P98161-3|PKD1;ENSG00000008710|ENST00000262304|PKD1	nc|ENSG00000008710|P98161-2|PKD1	nc|ENSG00000008710|P98161-2|PKD1	MULTI-MSMS	OvCa9_classI_Rep2	2	623.9169311523438	2	623.921532	1245.82851	-5.6275	-0.0035111	-0.80944	-0.00050503	-6.4369	-0.0040161	623.9209249558969	163.4	0.91801	163.18	162.75	163.67	-0.22696					66	30	3	0	0	0	0.7254	1	16634	16634		10.265	4.3441	1	62419			49389	924	40959	40987	53131	53131					0.21543087278519124
RLVLPRLALPV	11	Unmodified	_RLVLPRLALPV_					0	0	0		nc|ENSG00000008710|P98161-2|PKD1;nc|ENSG00000008710|P98161-3|PKD1;ENSG00000008710|ENST00000262304|PKD1	nc|ENSG00000008710|P98161-2|PKD1	nc|ENSG00000008710|P98161-2|PKD1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	623.921532	1245.82851	-6.4798	-0.0040429	-0.90819	-0.00056664	-7.388	-0.0046095	623.9207930062536	164.8	0.76541	163.16	162.93	163.69	-1.6405	-0.013639	0.00032138	NaN	10.265	45	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29280			49390	924	40959	40987							0.21543087278519124
RLVPQSRLL	9	Unmodified	_RLVPQSRLL_					0	0	0			REV__ITGAM|p.T819Lfs*17|1|0.13|ENSG00000169896|chr16:31325353-31325354|-/TTGGGGCTGACCCAGACTTGTGAGACCCTGA|frameshift_variant	REV__ITGAM|p.T819Lfs*17|1|0.13|ENSG00000169896|chr16:31325353-31325354|-/TTGGGGCTGACCCAGACTTGTGAGACCCTGA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	541.3453369140625	2	541.345658	1080.67676	-0.18719	-0.00010134	-1.1969	-0.00064794	-1.3841	-0.00074928	541.345222203672	81.441	1.5457	79.792	79.415	80.961	-1.6485					147	29	7	0	0	0	0.50149	1	6939	6939		42.396	1.618	1	3232100	+		49391	21494	40960	40988	53132	53132					0.139651062508392
RLVQHDLQV	9	Unmodified	_RLVQHDLQV_					0	0	0		ENSG00000152492|ENST00000392455|CCDC50;nc|ENSG00000152492|Q8IVM0|CCDC50	ENSG00000152492|ENST00000392455|CCDC50	ENSG00000152492|ENST00000392455|CCDC50	MULTI-MSMS	OvCa99_classI_Rep5	1	554.3182373046875	2	554.317097	1106.61964	0.031612	1.7523E-05	0.93127	0.00051622	0.96288	0.00053374	554.3173923812345	58.497	0.41536	58.497	58.28	58.696	0					29	9	4	0	0	0	0.38969	1	4969	4969		52.937	10.462	1	1213600			49392	5627	40961	40989	53133	53133					0.07059638974465088
RLVQMVHYVL	10	Unmodified	_RLVQMVHYVL_					0	0	0		ENST00000498084.5_1_20:34257546-34261984:-|nuORF	ENST00000498084.5_1_20:34257546-34261984:-|nuORF	ENST00000498084.5_1_20:34257546-34261984:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	628.406494140625	2	629.36045	1256.70635	2.7044	0.0017021	-3.0792	-0.0019379	-0.37477	-0.00023587	629.3584058041533	121.22	0.7835	121.22	120.78	121.57	0					28	17	3	0	0	0	0.026982	1	13907	13907		30.504	12.242	1	239740			49393	12819	40962	40990	53134	53134					0.08826302204670355
RLVRCHFFQ	9	Unmodified	_RLVRCHFFQ_					0	0	0			REV__ENST00000513973.5_1_6:83878483-83878678:-|nuORF	REV__ENST00000513973.5_1_6:83878483-83878678:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	603.0134887695312	2	603.32166	1204.62877	1.4361	0.00086644	4.1812	0.0025226	5.6173	0.003389	603.3240491925089	34.394	0.74884	31.606	31.299	32.048	-2.7881					20	14	2	0	0	0	0.027462	1	1055	1055		17.365	0.89182	1	17544	+		49394	26981	40963	40991	53135	53135					0.03463709059155917
RLVRLNTPINS	11	Unmodified	_RLVRLNTPINS_					0	0	0			REV__ENSG00000171564|ENST00000302068|FGB	REV__ENSG00000171564|ENST00000302068|FGB	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8818969726562	2	641.883136	1281.75172	-4.6434	-0.0029805	3.7859	0.0024301	-0.85746	-0.00055039	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.72473	1	15445	15445		19.104	0.77911	1	543390	+		49395	21627	40964	40992	53136	53136					0.12211243991418996
RLVRLPAL	8	Unmodified	_RLVRLPAL_					0	0	0			REV__ENST00000557809.5_1_14:24583994-24584755:+|nuORF	REV__ENST00000557809.5_1_14:24583994-24584755:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	469.2539978027344	2	469.318912	936.62327	-0.83059	-0.00038981	-0.23597	-0.00011074	-1.0666	-0.00050055	469.31872720346234	87.605	0.60461	84.978	84.649	85.253	-2.6269					15	11	2	0	0	0	0.028476	1	7432	7432		33.516	5.2613	1	22428	+		49396	27579	40965	40993	53137	53137					0.15242353538963016
RLVRLPAL	8	Unmodified	_RLVRLPAL_					0	0	0			REV__ENST00000557809.5_1_14:24583994-24584755:+|nuORF	REV__ENST00000557809.5_1_14:24583994-24584755:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	469.318912	936.62327	-0.66883	-0.00031389	0.051747	2.4286E-05	-0.61708	-0.00028961	469.31883831764327	87.122	0.76341	84.945	84.633	85.396	-2.1768	-0.016485	7.3925E-05	NaN	33.516	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15847	+		49397	27579	40965	40993							0.15242353538963016
RLVSSQKKSL	10	Unmodified	_RLVSSQKKSL_					0	0	0		ENSG00000164309|ENST00000446378|CMYA5;CMYA5|p.I1537Hfs*7|1|0.1|ENSG00000164309|chr5:79733373-79733374|-/C|frameshift_variant;CMYA5|p.L2315Tfs*2|1|0.05|ENSG00000164309|chr5:79735707-79735708|-/A|frameshift_variant	ENSG00000164309|ENST00000446378|CMYA5	ENSG00000164309|ENST00000446378|CMYA5	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.7899169921875	2	573.35368	1144.69281	-0.37283	-0.00021376	-1.4823	-0.0008499	-1.8551	-0.0010637	573.3539491537144	29.989	0.54877	29.989	29.835	30.383	0					18	10	3	0	0	0	0.026659	1	1150	1150		45.972	25.975	1	35815			49398	6445	40966	40994	53138	53138					0.12624767697093375
RLVSVQKQL	9	Unmodified	_RLVSVQKQL_					0	0	0			REV__nc|ENSG00000185963|Q8TD16|BICD2	REV__nc|ENSG00000185963|Q8TD16|BICD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.827392578125	2	535.837665	1069.66078	2.0606	0.0011042	0.049527	2.6539E-05	2.1102	0.0011307	535.8371831753095	77.446	0.46126	77.446	77.211	77.672	0					28	10	4	0	0	0	0.027452	1	7784	7784		67.494	0	1	970740	+		49399	15701	40967	40995	53139	53139					0.1287340001395023
RLVVLGIRP	9	Unmodified	_RLVVLGIRP_					0	0	0		nc|ENSG00000005007|Q92900|UPF1;ENSG00000005007|ENST00000262803|UPF1	nc|ENSG00000005007|Q92900|UPF1	nc|ENSG00000005007|Q92900|UPF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.8446960449219	2	511.845294	1021.67603	-0.96418	-0.00049351	-0.6932	-0.00035481	-1.6574	-0.00084832	511.84483208819705	100.83	2.6819	98.563	98.03	100.71	-2.2665					97	52	3	0	0	0	0.67509	1	9062	9062		23.042	0	1	723630			49400	841	40968	40996	53140	53140					0.16606311601788093
RLVYAGREE	9	Unmodified	_RLVYAGREE_					0	0	0			REV__tr|A0A7D7A0Z8|A0A7D7A0Z8_9CLOTAldehyde-alcoholdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=adhEPE=3SV=1	REV__tr|A0A7D7A0Z8|A0A7D7A0Z8_9CLOTAldehyde-alcoholdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=adhEPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	546.7947387695312	2	546.793455	1091.57236	-0.63582	-0.00034766	0.33684	0.00018418	-0.29898	-0.00016348	546.7935159078426	61.381	0.62608	61.381	61.2	61.826	0					40	14	5	0	0	0	0.40818	1	5413	5413		51.193	5.2204	1	2375400	+		49401	32464	40969	40997	53141	53141					0.03023359703456663
RLWEKLTLL	9	Unmodified	_RLWEKLTLL_					0	0	0		nc|ENSG00000130921|Q9H3J6-2|MTRFR;ENST00000538888.5_1_12:123738221-123738578:+|nuORF;ENSG00000130921|ENST00000253233|MTRFR	nc|ENSG00000130921|Q9H3J6-2|MTRFR	nc|ENSG00000130921|Q9H3J6-2|MTRFR	MULTI-MSMS	OvCa99_classI_Rep5	1	586.3643188476562	2	586.363516	1170.71248	1.271	0.00074525	0.93126	0.00054605	2.2022	0.0012913	586.3640401531661	109.88	0.94326	109.88	109.55	110.49	0					32	20	2	0	0	0	0.1944	1	12476	12476		77.318	18.536	1	1018300			49402	4024	40970	40998	53142	53142					0.13395143707839452
RLWERTSAS	9	Unmodified	_RLWERTSAS_					0	0	0		ENST00000465134.5_1_2:74650023-74652276:+|nuORF	ENST00000465134.5_1_2:74650023-74652276:+|nuORF	ENST00000465134.5_1_2:74650023-74652276:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.32763671875	2	553.291079	1104.56761	0.39302	0.00021745	-1.8138	-0.0010036	-1.4208	-0.0007861	553.2898185678966	45.905	0.6603	45.905	45.582	46.242	0					30	14	3	0	0	0	0.027426	1	3198	3198		66.429	10.925	1	233790			49403	12267	40971	40999	53143	53143					0.019504755606931212
RLWGKGLST	9	Unmodified	_RLWGKGLST_					0	0	0			REV__ENST00000300737.8_1_11:4114047-4114143:+|nuORF	REV__ENST00000300737.8_1_11:4114047-4114143:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.2983093261719	2	509.295633	1016.57671	0.37807	0.00019255	0.76847	0.00039138	1.1465	0.00058393	509.29600311179206	46.04	0.21937	46.04	45.934	46.154	0					8	4	2	0	0	0	0.027462	1	3228	3228		19.997	0	1	110950	+		49404	24236	40972	41000	53144	53144					0.06908868917037125
RLWLFGYDEQR	11	Unmodified	_RLWLFGYDEQR_					0	0	0		nc|ENSG00000144848|Q9NT62-2|ATG3;ENSG00000144848|ENST00000283290|ATG3;ENST00000495756.5_1_3:112255248-112280627:-|nuORF	nc|ENSG00000144848|Q9NT62-2|ATG3	nc|ENSG00000144848|Q9NT62-2|ATG3	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.77459716796875	3	494.921126	1481.74155	-0.38232	-0.00018922	-2.8385	-0.0014048	-3.2208	-0.001594	495.2537334781647	44.804	0.22623	44.804	44.706	44.932	0					6	4	2	0	0	0	0.026221	1	3046	3046		19.263	6.8298	1	58629			49405	5187	40973	41001	53145	53145					0.0199463626618126
RLWLVLQV	8	Unmodified	_RLWLVLQV_					0	0	0		ENSG00000111432|ENST00000229030|FZD10	ENSG00000111432|ENST00000229030|FZD10	ENSG00000111432|ENST00000229030|FZD10	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.81396484375	2	513.826569	1025.63859	1.9977	0.0010265	-4.1717	-0.0021435	-2.174	-0.0011171	513.8242365906558	97.035	0.43005	97.035	96.795	97.225	0					21	9	3	0	0	0	0.028476	1	10667	10667		42.474	0	1	624600			49406	2826	40974	41002	53146	53146					0.12679220336167418
RLWMPALVA	9	Unmodified	_RLWMPALVA_					0	0	0		ENST00000467451.1_1_X:153196080-153197612:-|nuORF	ENST00000467451.1_1_X:153196080-153197612:-|nuORF	ENST00000467451.1_1_X:153196080-153197612:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.268798828125	2	528.80478	1055.59501	-0.55248	-0.00029216	0.27833	0.00014718	-0.27416	-0.00014498	528.8061167361699	112.15	0.57341	110.64	110.47	111.05	-1.5111					20	10	3	0	0	0	0.027462	1	10374	10374		52.299	19.487	1	27216			49407	12312	40975	41003	53147	53147					0.0694328756737832
RLWMPALVA	9	Unmodified	_RLWMPALVA_					0	0	0		ENST00000467451.1_1_X:153196080-153197612:-|nuORF	ENST00000467451.1_1_X:153196080-153197612:-|nuORF	ENST00000467451.1_1_X:153196080-153197612:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	528.80478	1055.59501	1.3176	0.00069676	-0.19379	-0.00010248	1.1238	0.00059428	528.8052648494433	111.75	0.39571	110.65	110.5	110.89	-1.1038	0.0056416	-0.0002224	NaN	52.299	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18736			49408	12312	40975	41003							0.0694328756737832
RLWQRHTFLRW	11	Unmodified	_RLWQRHTFLRW_					0	0	0		ENSG00000236980|ENST00000545770|C3orf84	ENSG00000236980|ENST00000545770|C3orf84	ENSG00000236980|ENST00000545770|C3orf84	MULTI-SECPEP	OvCa9_classI_Rep2	2	532.7806396484375	3	533.632021	1597.87423	-0.74988	-0.00040016	-4.2142	-0.0022488	-4.9641	-0.002649	533.6297527160034	79.096	1.4272	77.356	77.097	78.524	-1.7398					41	27	2	0	0	0	0.026488	1	6619	6619		6.3209	0	1	150560			49409	9314	40976	41004	53148	53148					0.09921125513460538
RLWQRHTFLRW	11	Unmodified	_RLWQRHTFLRW_					0	0	0		ENSG00000236980|ENST00000545770|C3orf84	ENSG00000236980|ENST00000545770|C3orf84	ENSG00000236980|ENST00000545770|C3orf84	MULTI-MATCH	OvCa9_classI_Rep3	3		3	533.632021	1597.87423	0.85088	0.00045406	-5.8086	-0.0030997	-4.9578	-0.0026456	533.628896892192	79.828	1.3196	77.488	77.206	78.526	-2.3399	0.18108	-0.0016174	NaN	10.104	39	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	308100			49410	9314	40976	41004							0.09921125513460538
RLYDTHITV	9	Unmodified	_RLYDTHITV_					0	0	0		ENST00000469080.5_1_X:47092634-47106681:+|nuORF;ENSG00000102226|ENST00000377107|USP11;nc|ENSG00000102226|P51784|USP11;USP11|p.E403Gfs*17|1|0.07|ENSG00000102226|chrX:47241599-47241599|A/-|frameshift_variant	ENST00000469080.5_1_X:47092634-47106681:+|nuORF	ENST00000469080.5_1_X:47092634-47106681:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	559.3056640625	2	559.303655	1116.59276	0.97292	0.00054416	-0.70356	-0.0003935	0.26936	0.00015065	559.3031881152808	72.393	0.75219	72.393	72.125	72.877	0					44	18	4	0	0	0	0.074342	1	7038	7038		104.75	37.253	1	5984800			49411	2230	40977	41005	53149	53149					0.03912530363277256
RLYEMILKR	9	Oxidation (M)	_RLYEM(Oxidation (M))ILKR_		RLYEM(1)ILKR		RLYEM(65)ILKR	0	0	1		ENSG00000175906|ENST00000320033|ARL4D	ENSG00000175906|ENST00000320033|ARL4D	ENSG00000175906|ENST00000320033|ARL4D	MULTI-MSMS	OvCa9_classI_Rep2	2	413.24005126953125	3	413.241031	1236.70126	0.33192	0.00013716	0.06659	2.7518E-05	0.39851	0.00016468	413.2408992743728	64.284	2.2446	61.559	60.447	62.691	-2.7245					113	42	4	0	0	0	0.28003	1	4854	4854		65.278	17.318	1	551860			49412	7571	40978	41006	53150	53150		228			0.09237998342041465
RLYEMILKR	9	Oxidation (M)	_RLYEM(Oxidation (M))ILKR_		RLYEM(1)ILKR		RLYEM(63)ILKR	0	0	1		ENSG00000175906|ENST00000320033|ARL4D	ENSG00000175906|ENST00000320033|ARL4D	ENSG00000175906|ENST00000320033|ARL4D	MULTI-MSMS	OvCa9_classI_Rep3	3	413.24053955078125	3	413.241031	1236.70126	2.1217	0.00087677	-1.785	-0.00073762	0.33672	0.00013915	413.24014103402243	64.54	2.2304	61.547	60.987	63.218	-2.9933					100	43	4	0	0	0	0.29613	4	2472	2472;2478;2508;2526		63.426	28.248	1	320450			49413	7571	40978	41006	53151;53152;53153;53154	53151		228			0.09237998342041465
RLYEMILKR	9	Oxidation (M)	_RLYEM(Oxidation (M))ILKR_		RLYEM(1)ILKR		RLYEM(54)ILKR	0	0	1		ENSG00000175906|ENST00000320033|ARL4D	ENSG00000175906|ENST00000320033|ARL4D	ENSG00000175906|ENST00000320033|ARL4D	MULTI-MSMS	OvCa9_classI_Rep4_	4	413.2423095703125	3	413.241031	1236.70126	0.19777	8.1725E-05	0.81916	0.00033851	1.0169	0.00042024	413.2408339832691	65.031	2.6713	61.546	60.383	63.054	-3.4854					141	54	4	0	0	0	0.38268	1	4702	4702		53.597	16.089	1	658720			49414	7571	40978	41006	53155	53155		228			0.09237998342041465
RLYEMILKR	9	Unmodified	_RLYEMILKR_					0	0	0		ENSG00000175906|ENST00000320033|ARL4D	ENSG00000175906|ENST00000320033|ARL4D	ENSG00000175906|ENST00000320033|ARL4D	MULTI-MSMS	OvCa9_classI_Rep2	2	407.9094543457031	3	407.909392	1220.70635	0.59988	0.0002447	-0.69321	-0.00028277	-0.093335	-3.8072E-05	407.9089879809332	75.199	2.4907	73.228	72.796	75.286	-1.9711					104	47	3	0	0	0	0.1149	3	6181	6181;6186;6193		89.029	30.799	1	497760			49415	7571	40978	41007	53156;53157;53158	53156					0.10482302204650296
RLYFGLRVLPP	11	Unmodified	_RLYFGLRVLPP_					0	0	0		ENSG00000174529|ENST00000367167|TMEM81	ENSG00000174529|ENST00000367167|TMEM81	ENSG00000174529|ENST00000367167|TMEM81	MULTI-MSMS	OvCa9_classI_Rep3	3	444.2698974609375	3	444.271319	1329.79213	0.66341	0.00029474	-3.8748	-0.0017215	-3.2114	-0.0014267	444.2695760275752	70.917	1.4989	68.197	67.905	69.404	-2.7196					93	29	5	0	0	0	0.70315	1	3260	3260		28.577	2.685	1	769250			49416	7473	40979	41008	53159	53159					0.14042210381853693
RLYGARPLP	9	Unmodified	_RLYGARPLP_					0	0	0			REV__ENST00000568662.1_1_16:90072745-90075357:-|nuORF	REV__ENST00000568662.1_1_16:90072745-90075357:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	521.8125	2	521.811451	1041.60835	0.66684	0.00034797	2.3999	0.0012523	3.0667	0.0016003	521.8125550496435	68.201	4.7433	65.386	65.063	69.806	-2.8144					153	94	3	0	0	0	0.6653	1	3000	3000		24.203	1.1603	1	529900	+		49417	16371	40980	41009	53160	53160					0.08920861671003877
RLYGLGTGV	9	Unmodified	_RLYGLGTGV_					0	0	0		nc|ENSG00000155508|Q9UFF9-2|CNOT8;nc|ENSG00000155508|Q9UFF9-3|CNOT8;ENSG00000155508|ENST00000285896|CNOT8	nc|ENSG00000155508|Q9UFF9-2|CNOT8	nc|ENSG00000155508|Q9UFF9-2|CNOT8	MULTI-MSMS	OvCa99_classI_Rep5	1	468.27020263671875	2	468.269084	934.523616	1.147	0.00053709	0.75236	0.00035231	1.8993	0.0008894	468.26930314045046	81.549	0.56662	81.549	81.288	81.854	0					27	13	3	0	0	0	0.041116	1	8413	8413		125.81	49.04	1	1720500			49418	5786	40981	41010	53161	53161					0.05373491134378128
RLYKAIRVI	9	Unmodified	_RLYKAIRVI_					0	0	0		tr|A0A7D6VN60|A0A7D6VN60_9CLOTCellulasefamilyglycosylhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17570PE=3SV=1	tr|A0A7D6VN60|A0A7D6VN60_9CLOTCellulasefamilyglycosylhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17570PE=3SV=1	tr|A0A7D6VN60|A0A7D6VN60_9CLOTCellulasefamilyglycosylhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17570PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.8079833984375	2	566.371675	1130.7288	2.3254	0.001317	-0.51495	-0.00029165	1.8104	0.0010254	566.3718842318852	77.359	0.2084	77.359	77.293	77.501	0					7	4	2	0	0	0	0.027462	1	7790	7790		29.15	6.1071	1	120240			49419	34680	40982	41011	53162	53162					0.16866269664592437
RLYKSEPE	8	Unmodified	_RLYKSEPE_					0	0	0		nc|ENSG00000052126|Q9HAU0-8|PLEKHA5;nc|ENSG00000052126|Q9HAU0|PLEKHA5;nc|ENSG00000052126|Q9HAU0-2|PLEKHA5;nc|ENSG00000052126|Q9HAU0-4|PLEKHA5;ENSG00000052126|ENST00000429027|PLEKHA5	nc|ENSG00000052126|Q9HAU0-8|PLEKHA5	nc|ENSG00000052126|Q9HAU0-8|PLEKHA5	MULTI-SECPEP	OvCa9_classI_Rep3	3	511.2884216308594	2	511.269281	1020.52401	-0.78437	-0.00040102	2.2924	0.001172	1.508	0.00077101	511.26998906669684	96.126	0.69115	94.298	93.83	94.521	-1.8286					27	13	3	0	0	0	0.028476	1	6257	6257		23.042	0	1	38772			49420	1192	40983	41012	53163	53163					0.0145686606357458
RLYLGIIL	8	Unmodified	_RLYLGIIL_					0	0	0		ENST00000435469.2_1_17:66099171-66110645:+|nuORF	ENST00000435469.2_1_17:66099171-66110645:+|nuORF	ENST00000435469.2_1_17:66099171-66110645:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.7823791503906	2	480.81567	959.616788	-1.0271	-0.00049383	2.1272	0.0010228	1.1001	0.00052895	480.81624289878744	48.803	0.31067	45.695	45.451	45.761	-3.1077					9	5	2	0	0	0	0.028476	1	2713	2713		23.037	0	1	9336.3			49421	11859	40984	41013	53164	53164					0.13536415587611828
RLYLHSLF	8	Unmodified	_RLYLHSLF_					0	0	0			REV__ENST00000561650.5_2_15:52860752-52860938:-|nuORF	REV__ENST00000561650.5_2_15:52860752-52860938:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.7991943359375	2	524.800552	1047.58655	2.5467	0.0013365	-3.3215	-0.0017431	-0.77477	-0.0004066	524.7989032554841	130.75	1.3336	129.27	128.91	130.24	-1.4779					53	27	3	0	0	0	0.57878	1	12563	12563		68.485	0	1	116520	+		49422	27636	40985	41014	53165	53165					0.06466056922408825
RLYLPLAN	8	Unmodified	_RLYLPLAN_					0	0	0		ENST00000426028.2_1_9:29824858-29825224:-|nuORF	ENST00000426028.2_1_9:29824858-29825224:-|nuORF	ENST00000426028.2_1_9:29824858-29825224:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.2825927734375	2	480.287277	958.560001	0.17965	8.6282E-05	0.75077	0.00036059	0.93042	0.00044687	480.2878716402283	72.869	0.35173	72.869	72.684	73.035	0					14	8	2	0	0	0	0.028476	1	7135	7135		25.45	13.243	1	159800			49423	11729	40986	41015	53166	53166					0.07906368031081001
RLYNEAILTF	10	Unmodified	_RLYNEAILTF_					0	0	0			REV__ENSG00000145623|ENST00000274276|OSMR	REV__ENSG00000145623|ENST00000274276|OSMR	MULTI-MSMS	OvCa9_classI_Rep2	2	413.8951110839844	3	413.895917	1238.66592	0.28047	0.00011608	-2.6127	-0.0010814	-2.3322	-0.00096529	413.8948381864161	46.694	3.2733	43.984	43.547	46.82	-2.7097					153	65	4	0	0	0	0.58067	1	2778	2778		44.377	4.504	1	1035800	+		49424	19971	40987	41016	53167	53167					0.05613659085884137
RLYPPVSSSKI	11	Unmodified	_RLYPPVSSSKI_					0	0	0			REV__ENSG00000118217|ENST00000367942|ATF6	REV__ENSG00000118217|ENST00000367942|ATF6	MULTI-MSMS	OvCa99_classI_Rep5	1	416.2451171875	3	416.243317	1245.70812	1.0605	0.00044145	0.099509	4.142E-05	1.1601	0.00048287	416.24335289634735	72.461	2.2002	72.461	71.707	73.907	0					169	54	5	0	0	0	0.62666	1	7079	7079		42.243	1.1625	1	16175000	+		49425	18385	40988	41017	53168	53168					0.09509634494270358
RLYPWGVVEV	10	Unmodified	_RLYPWGVVEV_					0	0	0		ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000481500.1_1_2:242277175-242285749:+|nuORF	ENSG00000168385|ENST00000391971|SEPTIN2	ENSG00000168385|ENST00000391971|SEPTIN2	MULTI-MSMS	OvCa99_classI_Rep5	1	609.8399047851562	2	609.337498	1216.66044	2.6572	0.0016191	-0.53927	-0.00032859	2.118	0.0012905	609.3373004867776	121.61	1.2542	121.61	121.06	122.31	0					77	27	4	0	0	0	0.39172	2	14033	14000;14033		69.628	18.892	1	1602800			49426	6897	40989	41018	53169;53170	53170					0.06077980294094232
RLYPWGVVEV	10	Unmodified	_RLYPWGVVEV_					0	0	0		ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000481500.1_1_2:242277175-242285749:+|nuORF	ENSG00000168385|ENST00000391971|SEPTIN2	ENSG00000168385|ENST00000391971|SEPTIN2	MULTI-MSMS	OvCa9_classI_Rep2	2	609.3356323242188	2	609.337498	1216.66044	-1.0267	-0.0006256	1.2516	0.00076262	0.22488	0.00013703	609.3381813280367	121.8	0.89099	121.6	121.35	122.24	-0.19718					44	17	3	0	0	0	0.50999	2	11772	11772;11785		52.937	15.429	1	81039			49427	6897	40989	41018	53171;53172	53171					0.06077980294094232
RLYPWGVVEV	10	Unmodified	_RLYPWGVVEV_					0	0	0		ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000481500.1_1_2:242277175-242285749:+|nuORF	ENSG00000168385|ENST00000391971|SEPTIN2	ENSG00000168385|ENST00000391971|SEPTIN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	609.3356323242188	2	609.337498	1216.66044	0.48024	0.00029263	-0.3824	-0.00023301	0.097843	5.9619E-05	609.3372206509321	123.24	1.3877	121.87	121.56	122.94	-1.3666					71	27	4	0	0	0	0.5675	1	11649	11649		45.972	1.4412	1	110090			49428	6897	40989	41018	53173	53173					0.06077980294094232
RLYPWGVVEV	10	Unmodified	_RLYPWGVVEV_					0	0	0		ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000481500.1_1_2:242277175-242285749:+|nuORF	ENSG00000168385|ENST00000391971|SEPTIN2	ENSG00000168385|ENST00000391971|SEPTIN2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	609.337498	1216.66044	2.9334	0.0017874	-2.8223	-0.0017197	0.11114	6.7722E-05	609.3357505462471	122.9	1.2989	121.87	121.53	122.83	-1.0286	0.12975	-0.0030515	NaN	69.628	54	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133760			49429	6897	40989	41018							0.06077980294094232
RLYQAQRK	8	Unmodified	_RLYQAQRK_					0	0	0		ENST00000373233.7_1_20:40033690-40033804:-|nuORF	ENST00000373233.7_1_20:40033690-40033804:-|nuORF	ENST00000373233.7_1_20:40033690-40033804:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.2932739257812	2	531.811982	1061.60941	1.813	0.00096418	2.2661	0.0012051	4.0791	0.0021693	531.8129820561	103.02	0.58044	103.02	102.81	103.39	0					28	13	3	0	0	0	0.028476	1	11479	11479		42.474	3.6683	1	1277200			49430	11004	40990	41019	53174	53174					0.08107076039891581
RLYQNETAL	9	Unmodified	_RLYQNETAL_					0	0	0			REV__nc|ENSG00000260916|Q9ULG6-4|CCPG1	REV__nc|ENSG00000260916|Q9ULG6-4|CCPG1	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.8447265625	2	554.293288	1106.57202	0.2138	0.00011851	0.75141	0.0004165	0.96522	0.00053501	554.2929805805661	58.167	0.99276	58.167	57.859	58.852	0					60	23	4	0	0	0	0.027447	1	4939	4939		56.721	0	1	856040	+		49431	23565	40991	41020	53175	53175					0.0229993998361806
RLYSSYVPF	9	Unmodified	_RLYSSYVPF_					0	0	0			REV__nc|ENSG00000197857|P15621-2|ZNF44	REV__nc|ENSG00000197857|P15621-2|ZNF44	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.2969360351562	2	566.295299	1130.57605	3.7657	0.0021325	-0.76993	-0.00043601	2.9958	0.0016965	566.2948114602365	134.96	1.3846	133.42	132.97	134.35	-1.5437					58	27	3	0	0	0	0.42676	1	13095	13095		49.442	1.5259	1	64161	+		49432	22957	40992	41021	53176	53176					0.015980294773271453
RLYSSYVPF	9	Unmodified	_RLYSSYVPF_					0	0	0			REV__nc|ENSG00000197857|P15621-2|ZNF44	REV__nc|ENSG00000197857|P15621-2|ZNF44	MULTI-MATCH	OvCa9_classI_Rep2	2		2	566.295299	1130.57605	0.12456	7.054E-05	3.5842	0.0020297	3.7087	0.0021002	566.2969535535299	133.44	1.181	133.21	132.97	134.15	-0.22697	-0.1857	0.0025057	NaN	49.442	43	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40734	+		49433	22957	40992	41021							0.015980294773271453
RLYSSYVPF	9	Unmodified	_RLYSSYVPF_					0	0	0			REV__nc|ENSG00000197857|P15621-2|ZNF44	REV__nc|ENSG00000197857|P15621-2|ZNF44	MULTI-MATCH	OvCa9_classI_Rep3	3		2	566.295299	1130.57605	-0.84863	-0.00048057	3.5133	0.0019896	2.6647	0.001509	566.2974230182513	134.69	1.1357	133.56	133.11	134.25	-1.1226	0.16553	0.0024255	NaN	49.442	46	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36000	+		49434	22957	40992	41021							0.015980294773271453
RLYTGMHTV	9	Unmodified	_RLYTGMHTV_					0	0	0		nc|ENSG00000163082|Q8IWX5-2|SGPP2;ENSG00000163082|ENST00000321276|SGPP2	nc|ENSG00000163082|Q8IWX5-2|SGPP2	nc|ENSG00000163082|Q8IWX5-2|SGPP2	MULTI-MSMS	OvCa99_classI_Rep5	1	539.2799682617188	2	539.279126	1076.5437	-0.408	-0.00022003	-0.43875	-0.00023661	-0.84675	-0.00045664	539.2786264637488	53.872	0.77182	53.872	53.651	54.422	0					35	18	3	0	0	0	0.42676	1	4309	4309		49.442	6.5773	1	2287300			49435	6264	40993	41022	53177	53177					0.008489188026715055
RLYTLKICR	9	Unmodified	_RLYTLKICR_					0	0	0		ENST00000508591.5_1_4:84374743-84374815:-|nuORF	ENST00000508591.5_1_4:84374743-84374815:-|nuORF	ENST00000508591.5_1_4:84374743-84374815:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	583.3502197265625	2	583.347343	1164.68013	-0.1459	-8.511E-05	3.2637	0.0019039	3.1178	0.0018188	583.3492881507101	20.95	1.1296	20.95	20.776	21.905	0					70	34	5	0	0	0	0.40667	1	63	63		51.335	1.8939	1	2115900			49436	12946	40994	41023	53178	53178					0.10438033033210559
RLYTRKKVF	9	Unmodified	_RLYTRKKVF_					0	0	0		ENST00000481173.1_1_3:156867820-156868247:-|nuORF	ENST00000481173.1_1_3:156867820-156868247:-|nuORF	ENST00000481173.1_1_3:156867820-156868247:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	605.8716430664062	2	605.874582	1209.73461	-4.4328	-0.0026857	0.14303	8.6658E-05	-4.2897	-0.002599	605.8745511795182	157.17	1.2501	156	155.65	156.91	-1.1707					83	31	4	0	0	0	0.67509	1	13551	13551		23.042	3.0457	1	204530			49437	12540	40995	41024	53179	53179					0.13813368176261065
RLYVRWEL	8	Unmodified	_RLYVRWEL_					0	0	0			REV__ENST00000533310.5_2_11:68035536-68039119:-|nuORF	REV__ENST00000533310.5_2_11:68035536-68039119:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	567.8269653320312	2	567.824558	1133.63456	1.0876	0.00061755	2.6744	0.0015186	3.762	0.0021361	567.8259505149963	74.493	1.1197	74.493	74.249	75.369	0					59	27	4	0	0	0	0.73205	1	7406	7406		35.618	1.4457	1	3427400	+		49438	24276	40996	41025	53180	53180					0.07309130842463674
RLYYPTRLAI	10	Unmodified	_RLYYPTRLAI_					0	0	0		GTF2H4|p.R280L|1|0.17|ENSG00000213780|chr6:30912027-30912027|G/T|missense_variant	GTF2H4|p.R280L|1|0.17|ENSG00000213780|chr6:30912027-30912027|G/T|missense_variant	GTF2H4|p.R280L|1|0.17|ENSG00000213780|chr6:30912027-30912027|G/T|missense_variant	MSMS	OvCa9_classI_Rep4_	4	633.365966796875	2	633.371872	1264.72919	NaN	NaN	NaN	NaN	NaN	NaN	NaN	155.62	1	154.13	153.63	154.63	-1.4911								0	0	0	0.14301	1	15413	15413		19.997	0	1				49439	14355	40997	41026	53181	53181					0.10741644593804267
RMDLGPGLRQ	10	Oxidation (M)	_RM(Oxidation (M))DLGPGLRQ_		RM(1)DLGPGLRQ		RM(56)DLGPGLRQ	0	0	1			REV__ENST00000361866.7_1_21:47424682-47424931:+|nuORF	REV__ENST00000361866.7_1_21:47424682-47424931:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	579.8074951171875	2	579.806039	1157.59753	-0.26686	-0.00015473	-0.29136	-0.00016893	-0.55822	-0.00032366	579.8058922059781	66.596	2.3143	66.596	66.25	68.564	0					118	57	6	0	0	0	0.48398	1	6167	6167		56.434	6.9922	1	47674000	+		49440	24867	40998	41027	53182	53182		563			0.025030912343936507
RMEDIKILI	9	Unmodified	_RMEDIKILI_					0	0	0		nc|ENSG00000100644|Q16665-3|HIF1A;ENSG00000100644|ENST00000337138|HIF1A;nc|ENSG00000100644|Q16665-2|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	nc|ENSG00000100644|Q16665-3|HIF1A	MULTI-MSMS	OvCa99_classI_Rep5	1	565.8350219726562	2	565.833734	1129.65292	2.555	0.0014457	-0.17537	-9.9228E-05	2.3796	0.0013465	565.8334984368654	99.635	2.9756	99.635	99.276	102.25	0					141	70	4	0	0	0	0.1243	1	10991	10991		90.601	2.8466	1	23873000			49441	2095	40999	41028	53183	53183					0.09327504702173428
RMELLMLLN	9	Unmodified	_RMELLMLLN_					0	0	0			REV__tr|A0A7D6VUN1|A0A7D6VUN1_9CLOTSmallribosomalsubunitproteinuS4OS=ClostridiumintestinaleOX=36845GN=rpsDPE=3SV=1	REV__tr|A0A7D6VUN1|A0A7D6VUN1_9CLOTSmallribosomalsubunitproteinuS4OS=ClostridiumintestinaleOX=36845GN=rpsDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	566.815673828125	2	566.814487	1131.61442	-0.034625	-1.9626E-05	2.3842	0.0013514	2.3496	0.0013318	566.8158254764281	108.92	2.4235	108.69	108.32	110.75	-0.22498					109	48	5	0	0	0	0.55011	1	10273	10273		37.812	1.3648	1	1117900	+		49442	31689	41000	41029	53184	53184					0.053878757960092116
RMETTHMWK	9	Unmodified	_RMETTHMWK_					0	0	0		ENST00000530803.5_1_11:43918877-43940621:+|nuORF	ENST00000530803.5_1_11:43918877-43940621:+|nuORF	ENST00000530803.5_1_11:43918877-43940621:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	609.8707885742188	2	610.289168	1218.56378	-0.38557	-0.00023531	2.1756	0.0013277	1.79	0.0010924	610.2903803906661	59.131	0.47947	59.131	58.973	59.452	0					18	12	2	0	0	0	0.027426	1	5122	5122		76.774	15.802	1	291190			49443	13294	41001	41030	53185	53185					-0.03675653529012379
RMFDGKFVV	9	Unmodified	_RMFDGKFVV_					0	0	0		nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	MULTI-MSMS	OvCa99_classI_Rep5	1	549.7937622070312	2	549.791869	1097.56919	2.4117	0.0013259	-0.13391	-7.3623E-05	2.2778	0.0012523	549.7916964895893	86.696	0.37244	86.696	86.471	86.844	0					23	8	3	0	0	0	0.21231	1	9143	9143		74.255	20.904	1	7089200			49444	15099	41002	41031	53186	53186					0.02430393325107616
RMFDGKFVV	9	Unmodified	_RMFDGKFVV_					0	0	0		nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	549.791869	1097.56919	2.0533	0.0011289	3.2013	0.0017601	5.2547	0.002889	549.7934313774787	87.999	0.93318	86.587	86.059	86.993	-1.4115	0.01059	-0.00011873	NaN	74.255	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40052			49445	15099	41002	41031							0.02430393325107616
RMFDGKFVV	9	Unmodified	_RMFDGKFVV_					0	0	0		nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	549.791869	1097.56919	-0.85252	-0.00046871	6.1673	0.0033908	5.3148	0.002922	549.7949766457739	88.682	0.87934	86.551	86.214	87.093	-2.1309	-0.026126	0.0031427	NaN	74.255	49	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124800			49446	15099	41002	41031							0.02430393325107616
RMFDGKFVV	9	Unmodified	_RMFDGKFVV_					0	0	0		nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	549.791869	1097.56919	-0.49568	-0.00027252	5.9392	0.0032654	5.4436	0.0029928	549.79476823515	89.076	0.78609	86.473	86.237	87.023	-2.6027	-0.104	0.0028918	NaN	74.255	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100720			49447	15099	41002	41031							0.02430393325107616
RMGMYKIIL	9	Oxidation (M)	_RM(Oxidation (M))GMYKIIL_		RM(0.994)GM(0.006)YKIIL		RM(22)GM(-22)YKIIL	0	0	1		ENSG00000184530|ENST00000329722|C6orf58	ENSG00000184530|ENST00000329722|C6orf58	ENSG00000184530|ENST00000329722|C6orf58	MULTI-MSMS	OvCa99_classI_Rep5	1	570.8169555664062	2	570.81703	1139.61951	0.0035489	2.0258E-06	0.26467	0.00015108	0.26822	0.0001531	570.8169244437024	45.075	0.53693	45.075	44.795	45.332	0					26	11	3	0	0	0	0.44294	1	3092	3092		47.916	8.6628	2	429890			49448	8168	41003	41032	53187	53187		250			0.055281796586086784
RMIDIQTRM	9	Unmodified	_RMIDIQTRM_					0	0	0		nc|ENSG00000071462|O43709-2|BUD23;ENST00000463307.5_1_7:73097949-73107126:+|nuORF;ENSG00000071462|ENST00000265758|BUD23;nc|ENSG00000071462|O43709-3|BUD23	nc|ENSG00000071462|O43709-2|BUD23	nc|ENSG00000071462|O43709-2|BUD23	MULTI-MSMS	OvCa99_classI_Rep5	1	582.306396484375	2	582.304818	1162.59508	-0.41109	-0.00023938	1.2567	0.00073178	0.8456	0.0004924	582.3054044546085	71.596	1.2253	71.596	71.308	72.533	0					72	29	5	0	0	0	0.051592	2	6940	6913;6940		117.81	23.107	1	12736000			49449	1450	41004	41033	53188;53189	53189					0.02028919505050908
RMIFQHLERRF	11	Unmodified	_RMIFQHLERRF_					0	0	0			REV__ENST00000276440.11_1_8:25270087-25270417:+|nuORF	REV__ENST00000276440.11_1_8:25270087-25270417:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.8030700683594	3	511.61375	1531.81942	-0.96258	-0.00049247	2.1118	0.0010804	1.1492	0.00058794	511.6148676800451	27.766	0.2997	27.766	27.591	27.891	0					10	5	2	0	0	0	0.026221	1	847	847		14.086	7.7651	1	63370	+		49450	24098	41005	41034	53190	53190					0.07478370650551369
RMIIGQVV	8	Unmodified	_RMIIGQVV_					0	0	0		chr5:69625900-70219918|168|12.84|0.0|20.29|-|0|TE_info:HAL1,HAL1_dup7374,L1,LINE,acceptor,-,69625677,69625900|None,GUSBP14|1	chr5:69625900-70219918|168|12.84|0.0|20.29|-|0|TE_info:HAL1,HAL1_dup7374,L1,LINE,acceptor,-,69625677,69625900|None,GUSBP14|1	chr5:69625900-70219918|168|12.84|0.0|20.29|-|0|TE_info:HAL1,HAL1_dup7374,L1,LINE,acceptor,-,69625677,69625900|None,GUSBP14|1	MULTI-MSMS	OvCa9_classI_Rep2	2	458.2771301269531	2	458.275855	914.537157	2.1455	0.00098325	1.9379	0.00088809	4.0834	0.0018713	458.27659438720013	29.056	0.74896	26.346	26.18	26.929	-2.7097					27	15	2	0	0	0	0.75915	1	665	665		20.482	1.1219	1	55737			49451	503	41006	41035	53191	53191					0.07647025641972505
RMKKRKHKL	9	Unmodified	_RMKKRKHKL_					0	0	0			REV__ENST00000451383.1_1_2:67108241-67108316:-|nuORF	REV__ENST00000451383.1_1_2:67108241-67108316:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	408.93359375	3	408.932643	1223.7761	1.0058	0.0004113	1.9533	0.00079877	2.9591	0.0012101	408.9335897055977	22.592	0.37319	22.592	22.481	22.854	0					9	8	2	0	0	0	0.71128	1	237	237		14.137	0.051111	1	14105	+		49452	25969	41007	41036	53192	53192					0.1731622566396709
RMLERFVES	9	Unmodified	_RMLERFVES_					0	0	0		ENSG00000180855|ENST00000301547|ZNF443;ENSG00000196466|ENST00000430385|ZNF799;nc|ENSG00000196466|Q96GE5-2|ZNF799	ENSG00000180855|ENST00000301547|ZNF443	ENSG00000180855|ENST00000301547|ZNF443	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8021240234375	2	583.802965	1165.59138	0.97841	0.0005712	-0.94752	-0.00055316	0.03089	1.8034E-05	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.69123	1	1520	1520		20.947	2.6225	1	155970			49453	7891	41008	41037	53193	53193					0.015205730028810649
RMLPHAPGV	9	Unmodified	_RMLPHAPGV_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000471488.1_1_1:32797142-32797421:+|nuORF;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	OvCa99_classI_Rep5	1	489.2723693847656	2	489.271104	976.527655	-0.50076	-0.00024501	0.24401	0.00011939	-0.25675	-0.00012562	489.271210347219	60.043	1.4791	60.043	59.766	61.245	0					105	35	4	0	0	0	0.14739	3	5218	5191;5218;5248		85.359	27.548	1	33120000			49454	3180;8632	41009	41038	53194;53195;53196	53195					0.03845257356431375
RMNKQVIT	8	Unmodified	_RMNKQVIT_					0	0	0			REV__tr|A0A553SL17|A0A553SL17_NIACIRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=sigFPE=3SV=1	REV__tr|A0A553SL17|A0A553SL17_NIACIRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=sigFPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	494.2876281738281	2	495.281669	988.548785	-1.2069	-0.00059777	0.99341	0.00049202	-0.21352	-0.00010575	495.28171188374864	83.911	1.5112	81.65	81.434	82.945	-2.261					46	31	2	0	0	0	0.028476	1	4865	4865		60.294	0	1	55885	+		49455	30175	41010	41039	53197	53197					0.0540522266529706
RMNPNSPSI	9	Unmodified	_RMNPNSPSI_					0	0	0		ENST00000216520.6_1_14:69847257-69864987:-|nuORF;ENSG00000100632|ENST00000557016|ERH	ENST00000216520.6_1_14:69847257-69864987:-|nuORF	ENST00000216520.6_1_14:69847257-69864987:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	508.2535705566406	2	508.253108	1014.49166	-0.44335	-0.00022533	0.20941	0.00010643	-0.23394	-0.0001189	508.2530755988054	55.043	1.012	55.043	54.547	55.559	0					40	23	3	0	0	0	0.025955	2	4465	4465;4487		139.97	49.601	1	6298700			49456	2094	41011	41040	53198;53199	53198					-0.015002446110770506
RMPEFYNRF	9	Unmodified	_RMPEFYNRF_					0	0	0		ENSG00000130707|ENST00000352480|ASS1;ENST00000467695.5_1_9:133333919-133355188:+|nuORF	ENSG00000130707|ENST00000352480|ASS1	ENSG00000130707|ENST00000352480|ASS1	MULTI-MSMS	OvCa99_classI_Rep5	1	630.3043823242188	2	630.303133	1258.59171	1.9348	0.0012195	-0.20187	-0.00012724	1.733	0.0010923	630.3029805765553	82.984	0.85102	82.984	82.736	83.588	0					42	19	5	0	0	0	0.10502	1	8615	8615		95.815	28.321	1	1685600			49457	4002	41012	41041	53200	53200					-0.02724007277288365
RMPSYRYRRRR	11	Unmodified	_RMPSYRYRRRR_					0	0	0		ENSG00000075461|ENST00000262138|CACNG4	ENSG00000075461|ENST00000262138|CACNG4	ENSG00000075461|ENST00000262138|CACNG4	MULTI-MSMS	OvCa9_classI_Rep3	3	532.965087890625	3	532.963665	1595.86916	1.1302	0.00060235	1.5393	0.00082037	2.6695	0.0014227	532.96457346499	69.251	1.2933	66.437	66.063	67.356	-2.8144					75	25	4	0	0	0	0.72511	2	3073	3067;3073		14.086	1.1285	1	383110			49458	1534	41013	41042	53201;53202	53202					0.09506498379187178
RMPSYRYRRRR	11	Unmodified	_RMPSYRYRRRR_					0	0	0		ENSG00000075461|ENST00000262138|CACNG4	ENSG00000075461|ENST00000262138|CACNG4	ENSG00000075461|ENST00000262138|CACNG4	MULTI-MATCH	OvCa9_classI_Rep2	2		3	532.963665	1595.86916	-1.7548	-0.00093526	4.572	0.0024367	2.8172	0.0015015	532.9660764579893	68.956	1.1476	66.335	65.918	67.066	-2.6203	-0.05078	0.0033589	NaN	14.086	62	22	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168140			49459	1534	41013	41042							0.09506498379187178
RMQSKQLIQ	9	Unmodified	_RMQSKQLIQ_					0	0	0			REV__tr|A0A553SLV6|A0A553SLV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_21355PE=4SV=1	REV__tr|A0A553SLV6|A0A553SLV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_21355PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	566.3176879882812	2	566.318783	1130.62301	0.11461	6.4906E-05	-0.3062	-0.00017341	-0.19159	-0.0001085	566.3185811801935	56.518	1.4302	56.518	56.261	57.691	0					98	33	5	0	0	0	0.055627	1	4686	4686		115.49	16.912	1	17871000	+		49460	30270	41014	41043	53203	53203					0.0629256575684849
RMRELYVL	8	Unmodified	_RMRELYVL_					0	0	0			REV__HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|136|3|sense	REV__HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|136|3|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3018188476562	2	540.305144	1078.59573	-0.6715	-0.00036282	-3.6911	-0.0019943	-4.3627	-0.0023572	540.3029558613196	122.96	1.1336	122.74	122.46	123.6	-0.21803					60	22	4	0	0	0	0.64026	1	11939	11939		55.504	4.1688	1	191510	+		49461	28269	41015	41044	53204	53204					0.05958082216443472
RMRGPAQAK	9	Unmodified	_RMRGPAQAK_					0	0	0		ENSG00000113583|ENST00000231512|C5orf15;ENST00000509913.1_1_5:133295698-133304275:-|nuORF;ENST00000507191.1_1_5:133295698-133304275:-|nuORF	ENSG00000113583|ENST00000231512|C5orf15	ENSG00000113583|ENST00000231512|C5orf15	MULTI-MSMS	OvCa9_classI_Rep2	2	507.78485107421875	2	507.78491	1013.55527	1.702	0.00086427	-2.197	-0.0011156	-0.49492	-0.00025131	507.7837327408491	28.178	0.84576	25.468	25.294	26.14	-2.7097					29	17	2	0	0	0	0.59983	1	567	567		31.955	1.6371	1	91619			49462	2978	41016	41045	53205	53205					0.04903160616674995
RMRLVLVCV	9	Unmodified	_RMRLVLVCV_					0	0	0			REV__ENST00000275517.7_2_11:64846434-64846572:-|nuORF	REV__ENST00000275517.7_2_11:64846434-64846572:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	544.824951171875	2	544.825189	1087.63583	-5.7876	-0.0031532	4.4297	0.0024134	-1.3579	-0.00073983	544.8275981477423	155.03	0.91966	153.96	153.65	154.57	-1.073					57	22	4	0	0	0	0.57242	1	13334	13334		35.201	1.0282	1	91973	+		49463	24094	41017	41046	53206	53206					0.09551305615354977
RMRSYQVAL	9	Unmodified	_RMRSYQVAL_					0	0	0		tr|A0A7D6VS07|A0A7D6VS07_9CLOTLysEfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_03730PE=3SV=1	tr|A0A7D6VS07|A0A7D6VS07_9CLOTLysEfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_03730PE=3SV=1	tr|A0A7D6VS07|A0A7D6VS07_9CLOTLysEfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_03730PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.30908203125	2	562.305675	1122.5968	1.6081	0.00090426	3.4605	0.0019459	5.0687	0.0028501	562.3076275952775	112.77	1.839	111.26	110.53	112.37	-1.5111					103	36	5	0	0	0	0.22961	1	10460	10460		71.296	9.1883	1	1731000			49464	34973	41018	41047	53207	53207					0.040402965853445494
RMVTVCAESL	10	Unmodified	_RMVTVCAESL_					0	0	0		ENSG00000137869|ENST00000396402|CYP19A1;nc|ENSG00000137869|P11511-2|CYP19A1	ENSG00000137869|ENST00000396402|CYP19A1	ENSG00000137869|ENST00000396402|CYP19A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.79541015625	2	554.778102	1107.54165	1.3242	0.00073461	-1.9498	-0.0010817	-0.6256	-0.00034707	554.7770434401086	102.15	0.64563	102.15	101.61	102.25	0					17	14	2	0	0	0	0.026714	1	11306	11306		60.118	12.461	1	131440			49465	4632	41019	41048	53208	53208					-0.007818779974286372
RMWKINQDKRR	11	Unmodified	_RMWKINQDKRR_					0	0	0		ENST00000392502.8_1_7:23561910-23570802:-|nuORF	ENST00000392502.8_1_7:23561910-23570802:-|nuORF	ENST00000392502.8_1_7:23561910-23570802:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	510.953369140625	3	510.952654	1529.83613	-0.81742	-0.00041766	4.2045	0.0021483	3.3871	0.0017306	510.9548519015184	48.416	2.2317	45.656	44.835	47.067	-2.7603					140	44	5	0	0	0	0.72552	1	3054	3054		8.7993	2.1397	1	1255300			49466	11226	41020	41049	53209	53209					0.09240871536508166
RMWRHQRIQAI	11	Unmodified	_RMWRHQRIQAI_					0	0	0			REV__ENSG00000142178|ENST00000270162|SIK1	REV__ENSG00000142178|ENST00000270162|SIK1	MULTI-MSMS	OvCa99_classI_Rep5	1	498.9450988769531	3	498.945611	1493.815	1.6028	0.0007997	-3.8606	-0.0019262	-2.2578	-0.0011265	498.9437249212355	78.772	1.6962	78.772	78.415	80.111	0					131	41	5	0	0	0	0.71048	1	7982	7982		26.063	6.4365	1	34797000	+		49467	19771	41021	41050	53210	53210					0.08784906227674583
RMYRYFFTLLL	11	Unmodified	_RMYRYFFTLLL_					0	0	0			REV__tr|A0A7D7A0G9|A0A7D7A0G9_9CLOTDNAgyrasesubunitBOS=ClostridiumintestinaleOX=36845GN=gyrBPE=3SV=1	REV__tr|A0A7D7A0G9|A0A7D7A0G9_9CLOTDNAgyrasesubunitBOS=ClostridiumintestinaleOX=36845GN=gyrBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.7665100097656	3	508.279485	1521.81663	0.66524	0.00033813	3.7129	0.0018872	4.3782	0.0022253	508.2814267709985	36.138	0.89732	33.289	32.99	33.887	-2.849					37	17	3	0	0	0	0.02625	1	1280	1280		24.232	14.586	1	66109	+		49468	29814	41022	41051	53211	53211					0.07659102473053281
RNAGVILAP	9	Unmodified	_RNAGVILAP_					0	0	0		ENSG00000173614|ENST00000377205|NMNAT1	ENSG00000173614|ENST00000377205|NMNAT1	ENSG00000173614|ENST00000377205|NMNAT1	MULTI-MSMS	OvCa9_classI_Rep2	2	455.7777099609375	2	455.777077	909.5396	0.44756	0.00020399	-0.79005	-0.00036009	-0.34249	-0.0001561	455.77664816232084	39.294	1.4879	36.584	36.31	37.798	-2.7097					84	29	4	0	0	0	0.44294	1	1890	1890		47.916	1.1492	1	978610			49469	7398	41023	41052	53212	53212					0.08121197371258404
RNAHRKNK	8	Unmodified	_RNAHRKNK_					0	0	0		ENSG00000127995|ENST00000297273|CASD1;CASD1|p.Y478Ffs*22|1|0.05|ENSG00000127995|chr7:94544486-94544487|-/TCATCCTTCACAAGAACCCTTCAAGGAAGGA|frameshift_variant	ENSG00000127995|ENST00000297273|CASD1	ENSG00000127995|ENST00000297273|CASD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.8142395019531	2	512.299573	1022.58459	-0.40808	-0.00020906	3.7904	0.0019418	3.3823	0.0017328	512.3014042639683	39.028	0.62728	39.028	38.793	39.42	0					16	13	2	0	0	0	0.028476	1	2296	2296		33.516	3.0119	1	51615			49470	3860	41024	41053	53213	53213					0.07420440957173469
RNAHSIPQ	8	Unmodified	_RNAHSIPQ_					0	0	0		ENST00000599536.1_2_19:49967120-49989319:+|nuORF	ENST00000599536.1_2_19:49967120-49989319:+|nuORF	ENST00000599536.1_2_19:49967120-49989319:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	461.74652099609375	2	461.746308	921.478063	-0.83418	-0.00038518	-2.3292	-0.0010755	-3.1634	-0.0014607	461.74511648930593	116.8	1.6831	115.76	115.49	117.17	-1.0414					73	33	4	0	0	0	0.72896	1	8774	8774		37.159	1.5408	1	334790			49471	14213	41025	41054	53214	53214					0.014182656719981424
RNAKARKK	8	Unmodified	_RNAKARKK_					0	0	0		tr|A0A7D6VUA9|A0A7D6VUA9_9CLOTNADH:ubiquinonereductase(non-electrogenic)OS=ClostridiumintestinaleOX=36845GN=HZF06_19715PE=3SV=1	tr|A0A7D6VUA9|A0A7D6VUA9_9CLOTNADH:ubiquinonereductase(non-electrogenic)OS=ClostridiumintestinaleOX=36845GN=HZF06_19715PE=3SV=1	tr|A0A7D6VUA9|A0A7D6VUA9_9CLOTNADH:ubiquinonereductase(non-electrogenic)OS=ClostridiumintestinaleOX=36845GN=HZF06_19715PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	486.314453125	2	486.314692	970.614831	-1.0603	-0.00051562	3.6316	0.0017661	2.5713	0.0012505	486.31628594803936	50.625	1.6844	47.831	47.43	49.115	-2.794					77	33	4	0	0	0	0.71369	1	3307	3307		40.573	1.3198	1	433010			49472	35173	41026	41055	53215	53215					0.12834799622362425
RNEDFLTLC	9	Unmodified	_RNEDFLTLC_					0	0	0			REV__tr|A0A7D6VQG4|A0A7D6VQG4_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20820PE=4SV=1	REV__tr|A0A7D6VQG4|A0A7D6VQG4_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20820PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	554.827880859375	2	555.766049	1109.51754	1.3549	0.00075303	1.3455	0.00074781	2.7005	0.0015008	556.2682992544167	65.29	0.45675	62.566	62.285	62.742	-2.7245					10	8	2	0	0	0	0.027462	1	4985	4985		25.45	0	1	10501	+		49473	31322	41027	41056	53216	53216					-0.032833951594511745
RNEKDLHKLE	10	Unmodified	_RNEKDLHKLE_					0	0	0			REV__tr|A0A7D6ZZI2|A0A7D6ZZI2_9CLOTV-typeATPasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_06125PE=4SV=1	REV__tr|A0A7D6ZZI2|A0A7D6ZZI2_9CLOTV-typeATPasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_06125PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	641.3552856445312	2	641.349126	1280.6837	1.2934	0.00082949	1.9624	0.0012586	3.2557	0.002088	641.349895154775	124.42	0.96613	124.42	123.92	124.89	0					49	20	4	0	0	0	0.60504	1	14356	14356		41.427	2.6205	1	421800	+		49474	32411	41028	41057	53217	53217					0.05458374340719274
RNELARIVLR	10	Unmodified	_RNELARIVLR_					0	0	0			REV__ENSG00000196290|ENST00000409020|NIF3L1	REV__ENSG00000196290|ENST00000409020|NIF3L1	MULTI-MSMS	OvCa9_classI_Rep3	3	413.9260559082031	3	413.926322	1238.75714	1.8213	0.00075387	-1.8567	-0.00076853	-0.035421	-1.4662E-05	413.9254636200789	66.621	1.1121	63.711	63.454	64.566	-2.9107					51	21	3	0	0	0	0.6898	1	2768	2768		31.634	4.587	1	150460	+		49475	22808	41029	41058	53218	53218					0.1473096757388248
RNELDPKPQ	9	Unmodified	_RNELDPKPQ_					0	0	0			REV__ENSG00000174405|ENST00000442234|LIG4	REV__ENSG00000174405|ENST00000442234|LIG4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.3360595703125	2	548.790912	1095.56727	-2.3487	-0.001289	1.033	0.00056692	-1.3157	-0.00072204	548.7919762979823	49.644	1.1402	46.503	46.2	47.34	-3.1416					30	21	2	0	0	0	0.027462	1	2798	2798		40.778	6.6056	1	138050	+		49476	21828	41030	41059	53219	53219					0.023310558408411453
RNELVRLNE	9	Unmodified	_RNELVRLNE_					0	0	0			REV__ENSG00000130701|ENST00000252998|RBBP8NL	REV__ENSG00000130701|ENST00000252998|RBBP8NL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	571.3433837890625	2	571.817461	1141.62037	-1.1046	-0.00063163	1.9347	0.0011063	0.83006	0.00047464	571.8172918860512	42.509	0.72908	39.529	39.361	40.09	-2.9804					18	13	2	0	0	0	0.027462	1	2033	2033		40.778	14.085	1	26814	+		49477	18960	41031	41060	53220	53220					0.055224336235369265
RNELVRLNE	9	Unmodified	_RNELVRLNE_					0	0	0			REV__ENSG00000130701|ENST00000252998|RBBP8NL	REV__ENSG00000130701|ENST00000252998|RBBP8NL	MULTI-MATCH	OvCa9_classI_Rep2	2		2	571.817461	1141.62037	0.19074	0.00010907	0.092398	5.2835E-05	0.28313	0.0001619	571.8165602787207	42.158	0.24682	39.448	39.374	39.621	-2.7097	-0.040463	-0.001142	NaN	40.778	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9573.7	+		49478	18960	41031	41060							0.055224336235369265
RNETQVDGAR	10	Unmodified	_RNETQVDGAR_					0	0	0		CELSR1|p.D2180Pfs*74|1|0.14|ENSG00000075275|chr22:46389307-46389308|-/ACCCAAGACAGAAACCAGGG|frameshift_variant;nc|ENSG00000075275|Q9NYQ6|CELSR1;ENSG00000075275|ENST00000674500|CELSR1	CELSR1|p.D2180Pfs*74|1|0.14|ENSG00000075275|chr22:46389307-46389308|-/ACCCAAGACAGAAACCAGGG|frameshift_variant	CELSR1|p.D2180Pfs*74|1|0.14|ENSG00000075275|chr22:46389307-46389308|-/ACCCAAGACAGAAACCAGGG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	573.2861328125	2	573.286525	1144.5585	-2.5831	-0.0014808	2.396	0.0013736	-0.18704	-0.00010723	573.2878155681369	34.545	1.0883	31.835	31.612	32.701	-2.7097					58	21	5	0	0	0	0.42082	1	1349	1349		65.465	12.529	1	313120			49479	218	41032	41061	53221	53221					-0.007999177956207859
RNEVVTPE	8	Unmodified	_RNEVVTPE_					0	0	0		nc|ENSG00000138376|Q99728-3|BARD1;nc|ENSG00000138376|Q99728-2|BARD1;ENSG00000138376|ENST00000260947|BARD1	nc|ENSG00000138376|Q99728-3|BARD1	nc|ENSG00000138376|Q99728-3|BARD1	MULTI-MSMS	OvCa9_classI_Rep2	2	472.2463684082031	2	472.245806	942.47706	0.7855	0.00037095	-0.88427	-0.00041759	-0.098769	-4.6643E-05	472.2453030444666	130.26	0.84171	130.03	129.76	130.6	-0.22696					31	16	3	0	0	0	0.74229	1	12797	12797		30.504	2.6214	1	37357			49480	4680	41033	41062	53222	53222					0.0035200651242348613
RNEVVTPE	8	Unmodified	_RNEVVTPE_					0	0	0		nc|ENSG00000138376|Q99728-3|BARD1;nc|ENSG00000138376|Q99728-2|BARD1;ENSG00000138376|ENST00000260947|BARD1	nc|ENSG00000138376|Q99728-3|BARD1	nc|ENSG00000138376|Q99728-3|BARD1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	472.245806	942.47706	0.83357	0.00039365	-0.042966	-2.0291E-05	0.7906	0.00037336	472.2454369567015	130.91	0.39624	129.79	129.61	130.01	-1.1249	-0.075462	0.0019099	NaN	30.504	18	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21705			49481	4680	41033	41062							0.0035200651242348613
RNEVVTPE	8	Unmodified	_RNEVVTPE_					0	0	0		nc|ENSG00000138376|Q99728-3|BARD1;nc|ENSG00000138376|Q99728-2|BARD1;ENSG00000138376|ENST00000260947|BARD1	nc|ENSG00000138376|Q99728-3|BARD1	nc|ENSG00000138376|Q99728-3|BARD1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	472.245806	942.47706	4.4784	0.0021149	-4.4669	-0.0021095	0.011427	5.3966E-06	472.24362473851454	131.25	0.65109	129.77	129.64	130.3	-1.4779	-0.09437	-0.0022685	NaN	30.504	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33862			49482	4680	41033	41062							0.0035200651242348613
RNEWRMIT	8	Unmodified	_RNEWRMIT_					0	0	0		ENSG00000079999|ENST00000171111|KEAP1;KEAP1|p.M503V|1|0.09|ENSG00000079999|chr19:10489672-10489672|T/C|missense_variant	ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.82666015625	2	553.2822	1104.54985	2.4731	0.0013683	-3.7568	-0.0020786	-1.2837	-0.00071025	553.7813730560812	87.815	0.2908	87.815	87.671	87.962	0					9	6	2	0	0	0	0.028476	1	9323	9323		44.117	11.304	1	195580			49483	1626	41034	41063	53223	53223					0.0017543703420415113
RNFSLMLLRY	10	Unmodified	_RNFSLMLLRY_					0	0	0		ENST00000443402.6_3_7:38305090-38305201:-|nuORF;nc|ENSG00000289746|A2JGV3|TRGC1	ENST00000443402.6_3_7:38305090-38305201:-|nuORF	ENST00000443402.6_3_7:38305090-38305201:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	438.2466125488281	3	438.244664	1311.71216	1.181	0.00051758	3.9294	0.001722	5.1104	0.0022396	438.2463941604818	43.965	2.0387	41.255	40.758	42.797	-2.7097					118	40	4	0	0	0	0.75568	1	2520	2520		24.232	1.6702	1	1317400			49484	11951	41035	41064	53224	53224					0.06877400716348347
RNFTFNVKFTL	11	Unmodified	_RNFTFNVKFTL_					0	0	0			REV__ENSG00000155363|ENST00000369645|MOV10	REV__ENSG00000155363|ENST00000369645|MOV10	MULTI-SECPEP	OvCa9_classI_Rep2	2	462.9364929199219	3	462.922467	1385.74557	0.06294	2.9136E-05	-1.8484	-0.00085566	-1.7855	-0.00082653	462.92205606326377	44.561	0.89471	41.852	41.702	42.597	-2.7097					26	17	2	0	0	0	0.025624	1	2547	2547		32.034	11.002	1	26607	+		49485	20422	41036	41065	53225	53225					0.06812725759891691
RNGDPVHR	8	Unmodified	_RNGDPVHR_					0	0	0		AP1G2|p.D41N|1|0.28|ENSG00000213983|chr14:23567194-23567194|C/T|missense_variant	AP1G2|p.D41N|1|0.28|ENSG00000213983|chr14:23567194-23567194|C/T|missense_variant	AP1G2|p.D41N|1|0.28|ENSG00000213983|chr14:23567194-23567194|C/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	475.7483825683594	2	475.749382	949.484211	2.081	0.00099005	-3.624	-0.0017241	-1.543	-0.00073406	475.7474763022424	90.481	1.4829	90.481	90.228	91.711	0					75	36	3	0	0	0	0.62474	2	9692	9692;9722		58.782	14.251	1	3215300			49486	99	41037	41066	53226;53227	53226					0.0074478390351941925
RNGGGPPR	8	Unmodified	_RNGGGPPR_					0	0	0			REV__ENST00000488973.6_1_19:3572986-3573972:+|nuORF	REV__ENST00000488973.6_1_19:3572986-3573972:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	405.7185974121094	2	405.720093	809.425633	0.46862	0.00019013	-3.7729	-0.0015307	-3.3043	-0.0013406	405.71843883907457	120.34	1.7473	119	118.72	120.47	-1.3444					77	33	4	0	0	0	0.69415	2	11312	11312;11381		44.531	5.446	1	591240	+		49487	26632	41038	41067	53228;53229	53228					0.01329727329027719
RNGHIKHEKKV	11	Unmodified	_RNGHIKHEKKV_					0	0	0		ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	MULTI-MSMS	OvCa99_classI_Rep5	1	449.5986633300781	3	449.265227	1344.77385	0.078678	3.5347E-05	-2.9546	-0.0013274	-2.8759	-0.001292	449.2638015444655	23.817	2.3953	23.817	23.597	25.992	0					115	47	3	0	0	0	0.72472	1	439	439		19.263	2.0959	1	417070			49488	7477	41039	41068	53230	53230					0.11525468459808508
RNGLDLYSC	9	Unmodified	_RNGLDLYSC_					0	0	0		tr|A0A553SQ08|A0A553SQ08_NIACIRecombinaseOS=NialliacirculansOX=1397GN=CEQ21_16055PE=4SV=1	tr|A0A553SQ08|A0A553SQ08_NIACIRecombinaseOS=NialliacirculansOX=1397GN=CEQ21_16055PE=4SV=1	tr|A0A553SQ08|A0A553SQ08_NIACIRecombinaseOS=NialliacirculansOX=1397GN=CEQ21_16055PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.30322265625	2	520.745116	1039.47568	1.0196	0.00053096	-0.19086	-9.9388E-05	0.82877	0.00043158	520.7444320731324	42.956	0.841	40.246	39.917	40.758	-2.7097					28	16	3	0	0	0	0.027461	1	2399	2399		40.778	0	1	20847			49489	34102	41040	41069	53231	53231					-0.042479508480028016
RNGLISVV	8	Unmodified	_RNGLISVV_					0	0	0		tr|A0A553STW5|A0A553STW5_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05835PE=3SV=1	tr|A0A553STW5|A0A553STW5_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05835PE=3SV=1	tr|A0A553STW5|A0A553STW5_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05835PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	429.263427734375	2	429.263802	856.513051	-0.2469	-0.00010599	0.063722	2.7354E-05	-0.18318	-7.8633E-05	429.26374368244154	41.185	2.2742	38.205	37.606	39.88	-2.9804					97	43	4	0	0	0	0.67745	1	1846	1846		47.916	1.9434	1	644380			49490	34543	41041	41070	53232	53232					0.07905508479939272
RNGLISVV	8	Unmodified	_RNGLISVV_					0	0	0		tr|A0A553STW5|A0A553STW5_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05835PE=3SV=1	tr|A0A553STW5|A0A553STW5_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05835PE=3SV=1	tr|A0A553STW5|A0A553STW5_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05835PE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	429.263802	856.513051	-0.40751	-0.00017493	0.42286	0.00018152	0.015345	6.5872E-06	429.263825578488	37.928	0.49345	37.928	37.621	38.114	0	-0.20966	0.00028346	NaN	47.916	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151660			49491	34543	41041	41070							0.07905508479939272
RNGLLMPLLGV	11	Unmodified	_RNGLLMPLLGV_					0	0	0		ENSG00000214107|ENST00000397548|MAGEB1	ENSG00000214107|ENST00000397548|MAGEB1	ENSG00000214107|ENST00000397548|MAGEB1	MULTI-MSMS	OvCa9_classI_Rep2	2	591.856689453125	2	591.855001	1181.69545	-1.0559	-0.00062492	4.2754	0.0025304	3.2195	0.0019055	591.8573910777626	39.473	1.2899	36.763	36.459	37.749	-2.7097					73	25	4	0	0	0	0.69081	1	1963	1963		32.812	1.2826	1	212370			49492	9165	41042	41071	53233	53233					0.11186899830363473
RNGRPQKTRR	10	Unmodified	_RNGRPQKTRR_					0	0	0		nc|ENSG00000204305|Q15109-8|AGER;nc|ENSG00000204305|Q15109-9|AGER	nc|ENSG00000204305|Q15109-8|AGER	nc|ENSG00000204305|Q15109-8|AGER	MULTI-SECPEP	OvCa9_classI_Rep4_	4	634.3265991210938	2	634.873968	1267.73338	-0.17084	-0.00010846	-3.7697	-0.0023933	-3.9406	-0.0025018	634.8710506641352	101.66	1.1371	99.397	99.208	100.34	-2.2665					39	21	3	0	0	0	0.027028	1	9184	9184		31.53	0	1	76031			49493	15267	41043	41072	53234	53234					0.11022546860044713
RNGSAIGLPVP	11	Unmodified	_RNGSAIGLPVP_					0	0	0		ENSG00000176142|ENST00000319172|TMEM39A;ENST00000486159.5_1_3:119156911-119180963:-|nuORF;nc|ENSG00000176142|Q9NV64-2|TMEM39A;ENST00000486235.5_1_3:119165863-119180852:-|nuORF	ENSG00000176142|ENST00000319172|TMEM39A	ENSG00000176142|ENST00000319172|TMEM39A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.8314819335938	2	540.811648	1079.60874	-2.7479	-0.0014861	-0.27406	-0.00014821	-3.0219	-0.0016343	541.3142685031278	125.78	0.14867	124.36	124.24	124.39	-1.4143					4	2	2	0	0	0	0.025457	1	11953	11953		52.937	15.778	1	4594.5			49494	7585	41044	41073	53235	53235					0.07212236600184951
RNGVPLLR	8	Unmodified	_RNGVPLLR_					0	0	0		nc|ENSG00000156983|P55201-3|BRPF1;nc|ENSG00000156983|P55201|BRPF1;ENSG00000156983|ENST00000383829|BRPF1;nc|ENSG00000156983|P55201-4|BRPF1	nc|ENSG00000156983|P55201-3|BRPF1	nc|ENSG00000156983|P55201-3|BRPF1	MULTI-MSMS	OvCa99_classI_Rep5	1	462.79193115234375	2	462.790518	923.566484	-0.017376	-8.0414E-06	-0.090412	-4.1842E-05	-0.10779	-4.9883E-05	462.790351514532	62.104	0.99264	62.104	61.784	62.777	0					55	23	4	0	0	0	0.42208	1	5506	5506		85.359	0	1	4588100			49495	5868	41045	41074	53236	53236					0.10164305982470978
RNHGFHSYF	9	Unmodified	_RNHGFHSYF_					0	0	0			REV__ENST00000452357.6_1_12:113355638-113355737:+|nuORF	REV__ENST00000452357.6_1_12:113355638-113355737:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	582.7717895507812	2	582.770314	1163.52608	0.90506	0.00052744	3.3373	0.0019449	4.2423	0.0024723	582.7721536502288	144.67	1.4725	144.67	144.4	145.88	0					39	30	2	0	0	0	0.46377	1	16924	16924		45.952	8.7928	1	203780	+		49496	25979	41046	41075	53237	53237					-0.04914660407962401
RNIEKVSPWTL	11	Unmodified	_RNIEKVSPWTL_					0	0	0		tr|A0A7D6ZU52|A0A7D6ZU52_9CLOTAlpha/betafoldhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22810PE=4SV=1	tr|A0A7D6ZU52|A0A7D6ZU52_9CLOTAlpha/betafoldhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22810PE=4SV=1	tr|A0A7D6ZU52|A0A7D6ZU52_9CLOTAlpha/betafoldhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22810PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	448.2560119628906	3	448.254105	1341.74048	-0.44658	-0.00020018	2.5503	0.0011432	2.1037	0.000943	448.2551627149855	75.665	1.9062	73.255	72.822	74.728	-2.4106					112	36	5	0	0	0	0.69424	1	3855	3855		31.634	1.0654	1	540000			49497	35767	41047	41076	53238	53238					0.08328421897272165
RNIFLKIS	8	Unmodified	_RNIFLKIS_					0	0	0		nc|ENSG00000103534|Q6UXY8-4|TMC5;ENST00000567478.5_1_16:19467998-19503571:+|nuORF;nc|ENSG00000103534|Q6UXY8-3|TMC5;ENSG00000103534|ENST00000542583|TMC5;nc|ENSG00000103534|Q6UXY8-2|TMC5	nc|ENSG00000103534|Q6UXY8-4|TMC5	nc|ENSG00000103534|Q6UXY8-4|TMC5	MULTI-MSMS	OvCa9_classI_Rep3	3	495.806396484375	2	495.808377	989.6022	-3.0687	-0.0015215	-1.3757	-0.00068209	-4.4444	-0.0022036	495.80768519755566	143.85	1.3844	142.86	142.49	143.87	-0.9903					67	27	4	0	0	0	0.75661	1	11965	11965		19.36	0	1	103180			49498	2326	41048	41077	53239	53239					0.1069834343944649
RNIVLESVM	9	Unmodified	_RNIVLESVM_					0	0	0			REV__tr|A0A7D6ZWA8|A0A7D6ZWA8_9CLOTChemotaxisproteinCheAOS=ClostridiumintestinaleOX=36845GN=HZF06_17060PE=4SV=1	REV__tr|A0A7D6ZWA8|A0A7D6ZWA8_9CLOTChemotaxisproteinCheAOS=ClostridiumintestinaleOX=36845GN=HZF06_17060PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	530.791259765625	2	530.794609	1059.57467	-2.5847	-0.0013719	-4.3627	-0.0023157	-6.9474	-0.0036876	530.7922153115414	62.531	1.6878	59.777	59.093	60.781	-2.7541					56	32	2	0	0	0	0.5811	1	4703	4703		34.173	1.3601	1	272960	+		49499	32280	41049	41078	53240	53240					0.04726072116909563
RNIWLSILP	9	Unmodified	_RNIWLSILP_					0	0	0			REV__nc|ENSG00000198874|Q9NV66-2|TYW1	REV__nc|ENSG00000198874|Q9NV66-2|TYW1	MULTI-MSMS	OvCa9_classI_Rep3	3	556.3328247070312	2	556.334759	1110.65496	0.19549	0.00010876	-3.6363	-0.002023	-3.4408	-0.0019143	556.3324974852751	69.386	1.1434	66.572	66.261	67.405	-2.8143					67	22	4	0	0	0	0.33652	1	3103	3103		58.782	5.8453	1	473980	+		49500	23083	41050	41079	53241	53241					0.10406301502280257
RNKDQLIRAAV	11	Unmodified	_RNKDQLIRAAV_					0	0	0		ENST00000462733.5_1_17:17924548-17931952:-|nuORF;ENST00000585101.5_1_17:17919555-17931952:-|nuORF;ENST00000584205.5_1_17:17891793-17931952:-|nuORF;ENST00000488753.1_1_17:17924276-17929760:-|nuORF;ENSG00000171953|ENST00000474627|ATPAF2	ENST00000462733.5_1_17:17924548-17931952:-|nuORF	ENST00000462733.5_1_17:17924548-17931952:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	428.22998046875	3	428.589599	1282.74697	0.42873	0.00018375	-0.41824	-0.00017925	0.010486	4.4941E-06	428.5893132086897	21.73	0.91033	20.392	20.169	21.079	-1.3386					29	17	3	0	0	0	0.026101	1	226	226		15.921	0	1	58144			49501	7254	41051	41080	53242	53242					0.11690359848648768
RNKFERLL	8	Unmodified	_RNKFERLL_					0	0	0		tr|A0A7D7AFJ0|A0A7D7AFJ0_9CLOTProbabletRNAsulfurtransferaseOS=ClostridiumintestinaleOX=36845GN=thiIPE=3SV=1	tr|A0A7D7AFJ0|A0A7D7AFJ0_9CLOTProbabletRNAsulfurtransferaseOS=ClostridiumintestinaleOX=36845GN=thiIPE=3SV=1	tr|A0A7D7AFJ0|A0A7D7AFJ0_9CLOTProbabletRNAsulfurtransferaseOS=ClostridiumintestinaleOX=36845GN=thiIPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.7943725585938	2	538.322183	1074.62981	-1.8423	-0.00099174	1.4935	0.00080397	-0.3488	-0.00018777	538.3227335567357	43.327	1.0346	40.32	39.906	40.94	-3.0074					40	19	3	0	0	0	0.028476	1	2055	2055		42.396	5.237	1	80169			49502	36254	41052	41081	53243	53243					0.09548246699705487
RNKFERLL	8	Unmodified	_RNKFERLL_					0	0	0		tr|A0A7D7AFJ0|A0A7D7AFJ0_9CLOTProbabletRNAsulfurtransferaseOS=ClostridiumintestinaleOX=36845GN=thiIPE=3SV=1	tr|A0A7D7AFJ0|A0A7D7AFJ0_9CLOTProbabletRNAsulfurtransferaseOS=ClostridiumintestinaleOX=36845GN=thiIPE=3SV=1	tr|A0A7D7AFJ0|A0A7D7AFJ0_9CLOTProbabletRNAsulfurtransferaseOS=ClostridiumintestinaleOX=36845GN=thiIPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	538.322183	1074.62981	-0.12039	-6.4809E-05	-0.060089	-3.2347E-05	-0.18048	-9.7157E-05	538.3219551438482	43.187	0.9403	40.477	40.163	41.104	-2.7097	0.078712	-0.00092019	NaN	42.396	29	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30656			49503	36254	41052	41081							0.09548246699705487
RNKIDALPEL	10	Unmodified	_RNKIDALPEL_					0	0	0		ENSG00000204033|ENST00000372113|LRIT2;nc|ENSG00000204033|A6NDA9-2|LRIT2	ENSG00000204033|ENST00000372113|LRIT2	ENSG00000204033|ENST00000372113|LRIT2	MULTI-MSMS	OvCa99_classI_Rep5	1	584.8361206054688	2	584.837862	1167.66117	-0.5266	-0.00030797	-1.65	-0.00096499	-2.1766	-0.001273	584.8368104511369	23.573	0.53937	23.573	23.347	23.886	0					28	10	4	0	0	0	0.7759	1	363	363		21.96	4.5949	1	231030			49504	8944	41053	41082	53244	53244					0.08404774943142002
RNKILYRQS	9	Unmodified	_RNKILYRQS_					0	0	0		L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|9|1|sense	L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|9|1|sense	L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|9|1|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	589.34228515625	2	589.343646	1176.67274	-4.3129	-0.0025418	3.0093	0.0017735	-1.3036	-0.00076827	589.3453728975387	144.79	3.9151	143.81	141.71	145.63	-0.97299					242	78	5	0	0	0	0.67509	1	12218	12218		23.042	1.0826	1	192050			49505	14761	41054	41083	53245	53245					0.09147016757151505
RNKIRPNR	8	Unmodified	_RNKIRPNR_					0	0	0		nc|ENSG00000128276|O75679-2|RFPL3;ENSG00000128276|ENST00000249007|RFPL3	nc|ENSG00000128276|O75679-2|RFPL3	nc|ENSG00000128276|O75679-2|RFPL3	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.81982421875	2	527.323048	1052.63154	-0.29142	-0.00015367	-2.749	-0.0014496	-3.0404	-0.0016033	527.3216027943752	71.964	1.5843	69.362	68.683	70.267	-2.6023					43	31	2	0	0	0	0.028476	1	3399	3399		52.299	7.7681	1	216970			49506	3873	41055	41084	53246	53246					0.10733300508309185
RNKIRPNR	8	Unmodified	_RNKIRPNR_					0	0	0		nc|ENSG00000128276|O75679-2|RFPL3;ENSG00000128276|ENST00000249007|RFPL3	nc|ENSG00000128276|O75679-2|RFPL3	nc|ENSG00000128276|O75679-2|RFPL3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	527.323048	1052.63154	0.13335	7.0317E-05	-1.5609	-0.00082309	-1.4275	-0.00075277	527.3215357592072	71.757	1.8302	69.25	68.177	70.008	-2.5072	-0.056013	0.0010186	NaN	52.299	57	34	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133680			49507	3873	41055	41084							0.10733300508309185
RNKNELEA	8	Unmodified	_RNKNELEA_					0	0	0			REV__nc|ENSG00000138101|O60941-4|DTNB;REV__nc|ENSG00000134769|Q9Y4J8-10|DTNA	REV__nc|ENSG00000134769|Q9Y4J8-10|DTNA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.2823791503906	2	487.256705	972.498858	-0.78528	-0.00038263	2.7783	0.0013538	1.9931	0.00097113	487.25779710432386	95.055	1.2017	92.586	91.96	93.161	-2.4685					36	23	2	0	0	0	0.028476	1	8409	8409		40.573	1.7665	1	107320	+		49508	19509;19232	41056	41085	53247	53247					0.011508112609931231
RNKVVCTL	8	Unmodified	_RNKVVCTL_					0	0	0		ENST00000518820.1_1_8:143561046-143604069:+|nuORF;ENSG00000181790|ENST00000517894|ADGRB1	ENST00000518820.1_1_8:143561046-143604069:+|nuORF	ENST00000518820.1_1_8:143561046-143604069:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	466.7703552246094	2	466.770937	931.527321	-0.85436	-0.00039879	-2.6896	-0.0012554	-3.544	-0.0016542	466.7695294244089	69.818	0.617	69.818	69.513	70.13	0					23	14	2	0	0	0	0.64026	1	6662	6662		55.504	9.5523	1	1174800			49509	7956	41057	41086	53248	53248					0.058818376365934455
RNKWLHAWLSY	11	Unmodified	_RNKWLHAWLSY_					0	0	0			REV__nc|ENSG00000003987|Q9Y216-2|MTMR7	REV__nc|ENSG00000003987|Q9Y216-2|MTMR7	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.25799560546875	3	491.929844	1472.7677	-0.53804	-0.00026468	3.9059	0.0019214	3.3679	0.0016567	491.9309239185995	29.612	0.20003	29.612	29.486	29.686	0					5	3	2	0	0	0	0.026435	1	1056	1056		14.086	4.8742	1	16591	+		49510	16376	41058	41087	53249	53249					0.05022950228317313
RNLEALVRRL	10	Unmodified	_RNLEALVRRL_					0	0	0			REV__ENSG00000170468|ENST00000304061|RIOX1	REV__ENSG00000170468|ENST00000304061|RIOX1	MULTI-MSMS	OvCa9_classI_Rep3	3	413.9264831542969	3	413.926322	1238.75714	1.8213	0.00075387	-1.8567	-0.00076853	-0.035421	-1.4662E-05	413.9254636200789	66.621	1.1121	63.711	63.454	64.566	-2.9107					51	21	3	0	0	0	0.65849	1	2755	2755		35.152	7.0705	1	150460	+		49511	21541	41059	41088	53250	53250					0.1473096757388248
RNLEALVRRL	10	Unmodified	_RNLEALVRRL_					0	0	0			REV__ENSG00000170468|ENST00000304061|RIOX1	REV__ENSG00000170468|ENST00000304061|RIOX1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	413.926322	1238.75714	1.667	0.00069	-0.62166	-0.00025732	1.0453	0.00043268	413.92568697254086	66.015	1.1421	63.319	62.972	64.114	-2.6958	-0.26841	0.0013228	NaN	35.152	53	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80793	+		49512	21541	41059	41088							0.1473096757388248
RNLEALVRRL	10	Unmodified	_RNLEALVRRL_					0	0	0			REV__ENSG00000170468|ENST00000304061|RIOX1	REV__ENSG00000170468|ENST00000304061|RIOX1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	413.926322	1238.75714	1.1334	0.00046913	-0.59152	-0.00024484	0.54185	0.00022429	413.9258069232026	67.223	1.2779	63.732	63.393	64.671	-3.4902	0.14508	0.0013603	NaN	35.152	43	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99031	+		49513	21541	41059	41088							0.1473096757388248
RNLEESPL	8	Unmodified	_RNLEESPL_					0	0	0			REV__ENST00000442406.5_1_3:184038690-184052693:+|nuORF	REV__ENST00000442406.5_1_3:184038690-184052693:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	479.2801818847656	2	479.253631	956.49271	-0.2692	-0.00012901	1.8197	0.00087208	1.5505	0.00074307	479.25424534417203	97.147	0.62051	95.388	94.949	95.569	-1.7595					18	11	2	0	0	0	0.028476	1	6374	6374		71.296	0	1	28955	+		49514	18208	41060	41089	53251	53251					0.012722930294785328
RNLFLRPL	8	Unmodified	_RNLFLRPL_					0	0	0		ENST00000375050.5_1_6:32153594-32154113:-|nuORF	ENST00000375050.5_1_6:32153594-32154113:-|nuORF	ENST00000375050.5_1_6:32153594-32154113:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	514.8228149414062	2	514.821818	1027.62908	1.9476	0.0010027	-0.19934	-0.00010263	1.7483	0.00090004	514.8215320060426	87.075	1.4497	87.075	86.431	87.881	0					63	34	4	0	0	0	0.37872	1	9197	9197		92.191	3.5478	1	4448700			49515	11046	41061	41090	53252	53252					0.11637452050626962
RNLGPTDGNPG	11	Unmodified	_RNLGPTDGNPG_					0	0	0		ENST00000358935.2_1_10:94050973-94070944:+|nuORF	ENST00000358935.2_1_10:94050973-94070944:+|nuORF	ENST00000358935.2_1_10:94050973-94070944:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.3364868164062	2	549.270344	1096.52613	-0.13724	-7.5379E-05	0.33312	0.00018297	0.19588	0.00010759	549.2705684686364	31.148	0.62941	31.148	30.682	31.311	0					15	12	2	0	0	0	0.025418	1	1258	1258		47.96	18.81	1	41103			49516	10746	41062	41091	53253	53253					-0.018267051986185834
RNLGQTLII	9	Unmodified	_RNLGQTLII_					0	0	0			REV__tr|A0A7D7A523|A0A7D7A523_9CLOTPseudouridinesynthaseOS=ClostridiumintestinaleOX=36845GN=rluFPE=3SV=1	REV__tr|A0A7D7A523|A0A7D7A523_9CLOTPseudouridinesynthaseOS=ClostridiumintestinaleOX=36845GN=rluFPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.7938232421875	2	514.316566	1026.61858	-1.1967	-0.00061549	0.050424	2.5934E-05	-1.1463	-0.00058956	514.3164394891492	42.879	0.47175	39.872	39.591	40.063	-3.0074					11	8	2	0	0	0	0.027462	1	2002	2002		25.574	0	1	10590	+		49517	32624	41063	41092	53254	53254					0.10633424605589425
RNLIEKKNLN	10	Unmodified	_RNLIEKKNLN_					0	0	0		ENST00000395603.7_1_X:76939207-76939318:-|nuORF	ENST00000395603.7_1_X:76939207-76939318:-|nuORF	ENST00000395603.7_1_X:76939207-76939318:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	621.8513793945312	2	621.369861	1240.72517	1.2504	0.00077693	-0.9078	-0.00056408	0.34255	0.00021285	621.8696400817992	71.708	0.19877	69.106	68.932	69.13	-2.6023					6	3	2	0	0	0	0.026782	1	3357	3357		30.318	0	1	9652			49518	11294	41064	41093	53255	53255					0.11443555100095182
RNLKQIQS	8	Unmodified	_RNLKQIQS_					0	0	0		ENSG00000173612|ENST00000310357|GPRC6A;nc|ENSG00000173612|Q5T6X5-2|GPRC6A	ENSG00000173612|ENST00000310357|GPRC6A	ENSG00000173612|ENST00000310357|GPRC6A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.25982666015625	2	493.790715	985.566878	-0.60873	-0.00030058	0.59285	0.00029274	-0.015874	-7.8386E-06	493.79074376274775	40.717	1.1474	37.763	37.162	38.31	-2.9541					37	21	2	0	0	0	0.028476	1	1826	1826		31.955	15.482	1	113780			49519	7397	41065	41094	53256	53256					0.07351680911654057
RNLLRRALL	9	Unmodified	_RNLLRRALL_					0	0	0			REV__ENSG00000122406|ENST00000370321|RPL5	REV__ENSG00000122406|ENST00000370321|RPL5	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.8316040039062	2	562.872374	1123.73019	0.87992	0.00049528	2.5198	0.0014183	3.3997	0.0019136	562.8735908284323	67.276	0.39299	67.276	67.096	67.489	0					12	9	2	0	0	0	0.027462	1	6269	6269		18.324	0	1	835490	+		49520	18593	41066	41095	53257	53257					0.17327903753357532
RNLLVHFKR	9	Unmodified	_RNLLVHFKR_					0	0	0			REV__chr14:94062621-94065779|133|19.53|0.06|8.3|-|1|TE_info:L1PB1,L1PB1_dup11175,L1,LINE,donor,+,94065779,94071367|DDX24,None|61	REV__chr14:94062621-94065779|133|19.53|0.06|8.3|-|1|TE_info:L1PB1,L1PB1_dup11175,L1,LINE,donor,+,94065779,94071367|DDX24,None|61	MULTI-MSMS	OvCa9_classI_Rep3	3	591.8640747070312	2	591.864549	1181.71454	0.72408	0.00042856	-0.48902	-0.00028943	0.23506	0.00013913	591.8641978183085	65.182	2.2339	62.236	61.844	64.078	-2.9459					105	43	4	0	0	0	0.48324	1	2580	2580		44.117	6.9577	1	184170	+		49521	15915	41067	41096	53258	53258					0.13095617236285761
RNLNRGVV	8	Unmodified	_RNLNRGVV_					0	0	0			REV__ENSG00000173548|ENST00000308527|SNX33	REV__ENSG00000173548|ENST00000308527|SNX33	MULTI-MSMS	OvCa99_classI_Rep5	1	464.2780456542969	2	464.277775	926.540997	0.099573	4.623E-05	-0.16866	-7.8307E-05	-0.06909	-3.2077E-05	464.2776322691101	32.965	0.6377	32.965	32.796	33.434	0					19	12	2	0	0	0	0.73938	1	1482	1482		31.955	2.8053	1	310910	+		49522	21783	41068	41097	53259	53259					0.07478831460048241
RNLRKRNV	8	Unmodified	_RNLRKRNV_					0	0	0			REV__ENST00000503849.5_1_5:175815432-175815552:-|nuORF	REV__ENST00000503849.5_1_5:175815432-175815552:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	528.8367309570312	2	528.330873	1054.64719	3.0268	0.0015991	-0.5529	-0.00029212	2.4739	0.001307	528.330384856165	25.512	0.98969	22.802	22.428	23.418	-2.7097					46	22	4	0	0	0	0.7327	1	320	320		8.8223	0	1	151950	+		49523	16667	41069	41098	53260	53260					0.12205587025346176
RNLSLAHNR	9	Unmodified	_RNLSLAHNR_					0	0	0		ENSG00000183908|ENST00000497933|LRRC55	ENSG00000183908|ENST00000497933|LRRC55	ENSG00000183908|ENST00000497933|LRRC55	MULTI-MSMS	OvCa9_classI_Rep2	2	540.8052368164062	2	540.804688	1079.59482	-2.4915	-0.0013474	2.9764	0.0016096	0.48483	0.0002622	540.8058905637274	34.869	1.1922	32.159	31.91	33.102	-2.7097					80	23	5	0	0	0	0.50149	1	1385	1385		42.396	3.1433	1	239100			49524	8122	41070	41099	53261	53261					0.058210038917422935
RNLVDGQSI	9	Unmodified	_RNLVDGQSI_					0	0	0			REV__nc|ENSG00000169876|Q685J3-2|MUC17	REV__nc|ENSG00000169876|Q685J3-2|MUC17	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.8254089355469	2	501.272355	1000.53016	-0.80661	-0.00040433	-0.18255	-9.1506E-05	-0.98916	-0.00049584	501.2723453464592	62.817	0.6783	59.359	59.111	59.789	-3.4577					23	13	3	0	0	0	0.027461	1	4394	4394		49.442	16.629	1	108480	+		49525	21490	41071	41100	53262	53262					0.02991384295091848
RNLVFLGID	9	Unmodified	_RNLVFLGID_					0	0	0		ENSG00000172687|ENST00000683779|ZNF738;nc|ENSG00000172687|Q8NE65-2|ZNF738	ENSG00000172687|ENST00000683779|ZNF738	ENSG00000172687|ENST00000683779|ZNF738	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8148193359375	2	523.803291	1045.59203	2.3778	0.0012455	-1.4838	-0.00077722	0.89396	0.00046826	523.802257990138	107.74	0.4668	107.74	107.52	107.99	0					18	10	3	0	0	0	0.027462	1	12160	12160		15.642	0.97771	1	476350			49526	7313	41072	41101	53263	53263					0.07105735714230832
RNMALMFLM	9	Unmodified	_RNMALMFLM_					0	0	0			REV__ENSG00000182782|ENST00000328880|HCAR2	REV__ENSG00000182782|ENST00000328880|HCAR2	MULTI-SECPEP	OvCa9_classI_Rep3	3	563.3490600585938	2	563.782133	1125.54971	-0.74924	-0.00042241	1.2717	0.00071694	0.52241	0.00029453	563.7829841255821	89.596	0.6167	87.516	87.388	88.004	-2.0805					16	11	2	0	0	0	0.027462	1	5510	5510		44.531	2.1349	1	155750	+		49527	22317	41073	41102	53264	53264					-0.008040222816589448
RNMALMFLM	9	Unmodified	_RNMALMFLM_					0	0	0			REV__ENSG00000182782|ENST00000328880|HCAR2	REV__ENSG00000182782|ENST00000328880|HCAR2	MULTI-MATCH	OvCa99_classI_Rep5	1		2	563.782133	1125.54971	3.0362	0.0017117	-1.2444	-0.00070158	1.7917	0.0010102	563.7813379341926	87.86	0.50147	87.86	87.586	88.087	0	0.17218	-0.00071409	NaN	42.474	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	836170	+		49528	22317	41073	41102							-0.008040222816589448
RNMNRCYW	8	Unmodified	_RNMNRCYW_					0	0	0			REV__ENSG00000135605|ENST00000381501|TEC	REV__ENSG00000135605|ENST00000381501|TEC	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.34033203125	2	571.752753	1141.49095	-0.54008	-0.00030879	-3.0523	-0.0017451	-3.5923	-0.0020539	571.7507669613703	35.302	0.65611	35.302	34.957	35.614	0					31	13	4	0	0	0	0.028476	1	1757	1757		20.482	1.3783	1	82308	+		49529	19303	41074	41103	53265	53265					-0.074133625317927
RNNALLPLL	9	Unmodified	_RNNALLPLL_					0	0	0			REV__ENSG00000130561|ENST00000409110|SAG	REV__ENSG00000130561|ENST00000409110|SAG	MULTI-MSMS	OvCa9_classI_Rep2	2	512.3177490234375	2	512.319109	1022.62366	-1.0601	-0.00054311	0.66174	0.00033902	-0.39836	-0.00020409	512.3193628969464	54.362	1.9918	51.548	51.075	53.067	-2.8139					110	39	4	0	0	0	0.52083	1	3748	3748		40.573	0	1	832500	+		49530	18953	41075	41104	53266	53266					0.11325728468182206
RNNIADLAKS	10	Unmodified	_RNNIADLAKS_					0	0	0			REV__tr|A0A7D6VQB6|A0A7D6VQB6_9CLOTAlanine--glyoxylateaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02360PE=3SV=1	REV__tr|A0A7D6VQB6|A0A7D6VQB6_9CLOTAlanine--glyoxylateaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02360PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.783447265625	2	551.304187	1100.59382	-1.0528	-0.00058041	-4.0273	-0.0022203	-5.0801	-0.0028007	551.3022218348709	42.556	0.92641	39.576	39.216	40.142	-2.9804					34	17	3	0	0	0	0.026968	1	2018	2018		22.58	0	1	63314	+		49531	31311	41076	41105	53267	53267					0.04754744732167637
RNNKLDLLR	9	Unmodified	_RNNKLDLLR_					0	0	0			REV__ENSG00000092200|ENST00000400017|RPGRIP1	REV__ENSG00000092200|ENST00000400017|RPGRIP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	571.3433837890625	2	571.343646	1140.67274	-1.0604	-0.00060586	0.27173	0.00015525	-0.78869	-0.00045061	571.3437229435598	42.834	1.0492	39.827	39.434	40.483	-3.0074					47	19	3	0	0	0	0.56889	1	2033	2033		35.618	1.4457	1	329570	+		49532	17265	41077	41106	53268	53268					0.10803016757108708
RNNLTRLH	8	Unmodified	_RNNLTRLH_					0	0	0		INSR-EIF6|1|fusion;INSR|p.D440Tfs*47|1|0.48|ENSG00000171105|chr19:7170702-7170702|C/-|frameshift_variant;nc|ENSG00000171105|P06213-2|INSR;ENSG00000171105|ENST00000302850|INSR	INSR-EIF6|1|fusion	INSR-EIF6|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.2932739257812	2	512.293956	1022.57336	0.73059	0.00037427	-0.77108	-0.00039502	-0.040496	-2.0746E-05	512.2934110538755	35.064	1.2028	32.215	31.936	33.139	-2.849					59	23	3	0	0	0	0.62474	1	1094	1094		58.782	7.5893	1	329190			49533	7171	41078	41107	53269	53269					0.0629761886302731
RNNSKGYMK	9	Unmodified	_RNNSKGYMK_					0	0	0		ENSG00000164484|ENST00000296978|TMEM200A	ENSG00000164484|ENST00000296978|TMEM200A	ENSG00000164484|ENST00000296978|TMEM200A	MULTI-MSMS	OvCa99_classI_Rep5	1	549.2830810546875	2	549.279657	1096.54476	1.508	0.00082832	-1.6974	-0.00093233	-0.18935	-0.000104	549.2780894921569	90.648	1.0632	90.648	90.269	91.332	0					61	26	3	0	0	0	0.35444	1	9734	9734		56.721	5.3856	1	1930600			49534	6461	41079	41108	53270	53270					0.00035133171581946954
RNPFTAAYDI	10	Unmodified	_RNPFTAAYDI_					0	0	0		ENSG00000156150|ENST00000647563|ALX3	ENSG00000156150|ENST00000647563|ALX3	ENSG00000156150|ENST00000647563|ALX3	MULTI-MSMS	OvCa99_classI_Rep5	1	584.2915649414062	2	584.293288	1166.57202	0.56069	0.00032761	3.1706	0.0018525	3.7313	0.0021802	584.2952230074814	81.397	0.89937	81.397	81.162	82.061	0					38	21	3	0	0	0	0.62712	1	8396	8396		38.754	1.5945	1	2267300			49535	5822	41080	41109	53271	53271					-0.004600600163939816
RNPKEHLSS	9	Unmodified	_RNPKEHLSS_					0	0	0		nc|ENSG00000293032|Q6UXP3|TMEM14EP	nc|ENSG00000293032|Q6UXP3|TMEM14EP	nc|ENSG00000293032|Q6UXP3|TMEM14EP	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.267578125	2	534.283254	1066.55196	-0.19063	-0.00010185	0.26106	0.00013948	0.070424	3.7626E-05	534.2830369104217	33.302	0.68881	33.302	33.087	33.776	0					17	10	3	0	0	0	0.027462	1	1540	1540		31.955	5.2619	1	47217			49536	15405	41081	41110	53272	53272					0.021341890436588073
RNPQRRAFSP	10	Unmodified	_RNPQRRAFSP_					0	0	0		ENST00000285021.11_1_3:14214430-14214550:-|nuORF	ENST00000285021.11_1_3:14214430-14214550:-|nuORF	ENST00000285021.11_1_3:14214430-14214550:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	410.2279357910156	3	410.226772	1227.65849	1.4103	0.00057854	1.3828	0.00056727	2.7931	0.0011458	410.2273104732907	37.909	1.7383	35.016	34.541	36.28	-2.8925					77	34	4	0	0	0	0.65849	1	1438	1438		35.152	3.5178	1	312400			49537	10073	41082	41111	53273	53273					0.05376364328822092
RNQIIAATVEN	11	Unmodified	_RNQIIAATVEN_					0	0	0		ENSG00000167916|ENST00000264651|KRT24;CON__Q2M2I5	ENSG00000167916|ENST00000264651|KRT24	ENSG00000167916|ENST00000264651|KRT24	MULTI-MSMS	OvCa9_classI_Rep2	2	410.2279357910156	3	410.226326	1227.65715	-0.59158	-0.00024268	4.4763	0.0018363	3.8847	0.0015936	410.22807386978417	38.111	1.8292	35.402	35.124	36.953	-2.7097					84	36	4	0	0	0	0.6986	1	1769	1769		30.139	3.4462	1	218460		+	49538	641	41083	41112	53274	53274					0.052426854494115105
RNQLRRNES	9	Unmodified	_RNQLRRNES_					0	0	0		tr|A0A553SK25|A0A553SK25_NIACIEndonucleaseMutS2OS=NialliacirculansOX=1397GN=mutS2PE=3SV=1	tr|A0A553SK25|A0A553SK25_NIACIEndonucleaseMutS2OS=NialliacirculansOX=1397GN=mutS2PE=3SV=1	tr|A0A553SK25|A0A553SK25_NIACIEndonucleaseMutS2OS=NialliacirculansOX=1397GN=mutS2PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.3400268554688	2	586.815784	1171.61702	-0.72419	-0.00042497	3.2635	0.0019151	2.5393	0.0014901	586.8177021450197	53.266	0.25813	53.266	53.131	53.389	0					9	5	2	0	0	0	0.027441	1	4228	4228		40.778	8.8233	1	239540			49539	33569	41084	41113	53275	53275					0.03807183569506378
RNQNKLLS	8	Unmodified	_RNQNKLLS_					0	0	0		ENSG00000237452|ENST00000457052|MEIOSIN	ENSG00000237452|ENST00000457052|MEIOSIN	ENSG00000237452|ENST00000457052|MEIOSIN	MULTI-MSMS	OvCa9_classI_Rep2	2	486.7829284667969	2	486.78289	971.551228	0.43908	0.00021374	-0.52243	-0.00025431	-0.083348	-4.0573E-05	486.7825302648535	31.131	0.98493	28.421	28.248	29.233	-2.7097					37	19	4	0	0	0	0.68714	1	923	923		45.952	0	1	171450			49540	9317	41085	41114	53276	53276					0.06431394394610379
RNQPGDGVLY	10	Unmodified	_RNQPGDGVLY_					0	0	0			REV__nc|ENSG00000144320|Q9C0E8-3|LNPK	REV__nc|ENSG00000144320|Q9C0E8-3|LNPK	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.7842407226562	2	559.783087	1117.55162	1.5627	0.00087476	-1.8044	-0.0010101	-0.2417	-0.0001353	559.7818841188371	141.15	1.7806	139.69	139.4	141.18	-1.4627					70	33	3	0	0	0	0.65434	1	13796	13796		35.618	6.4687	1	131740	+		49541	19901	41086	41115	53277	53277					-0.0024523067618247296
RNRAREEV	8	Unmodified	_RNRAREEV_					0	0	0		ENSG00000135736|ENST00000258214|CCDC102A	ENSG00000135736|ENST00000258214|CCDC102A	ENSG00000135736|ENST00000258214|CCDC102A	MULTI-MSMS	OvCa9_classI_Rep3	3	515.2835083007812	2	515.281046	1028.54754	0.94125	0.00048501	1.4088	0.00072593	2.35	0.0012109	515.2818157223961	106.61	4.2629	105.34	104.28	108.54	-1.267					165	82	5	0	0	0	0.7388	1	7578	7578		11.511	2.3281	1	4317700			49542	4409	41087	41116	53278	53278					0.03440724620736546
RNRESFLKK	9	Unmodified	_RNRESFLKK_					0	0	0		tr|A0A7D6W1C2|A0A7D6W1C2_9CLOTPutativebeta-lysineN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=ablBPE=4SV=1	tr|A0A7D6W1C2|A0A7D6W1C2_9CLOTPutativebeta-lysineN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=ablBPE=4SV=1	tr|A0A7D6W1C2|A0A7D6W1C2_9CLOTPutativebeta-lysineN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=ablBPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3410034179688	2	589.343646	1176.67274	-4.3129	-0.0025418	3.0093	0.0017735	-1.3036	-0.00076827	589.3453728975387	144.79	3.9151	143.81	141.71	145.63	-0.97299					242	78	5	0	0	0	0.69895	1	12171	12171		18.324	0.062328	1	192050			49543	35405	41088	41117	53279	53279					0.09147016757128767
RNRGRPTLG	9	Unmodified	_RNRGRPTLG_					0	0	0			REV__ENSG00000116032|ENST00000234389|GRIN3B	REV__ENSG00000116032|ENST00000234389|GRIN3B	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.8004150390625	2	513.799406	1025.58426	0.45399	0.00023326	-0.84229	-0.00043277	-0.3883	-0.00019951	513.7987957920849	32.115	0.81847	29.42	28.786	29.605	-2.6954					76	29	3	0	0	0	0.70685	1	702	702		15.642	1.5047	1	87672	+		49544	18282	41089	41118	53280	53280					0.0724902123731681
RNRIDTLMYLL	11	Unmodified	_RNRIDTLMYLL_					0	0	0		ENSG00000013503|ENST00000228347|POLR3B;nc|ENSG00000013503|Q9NW08-2|POLR3B	ENSG00000013503|ENST00000228347|POLR3B	ENSG00000013503|ENST00000228347|POLR3B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.7561950683594	3	469.930745	1406.7704	0.79205	0.00037221	1.8479	0.00086838	2.6399	0.0012406	470.2659972874515	60.672	1.2419	57.242	56.749	57.991	-3.43					39	24	2	0	0	0	0.025995	1	4077	4077		29.551	6.9892	1	214090			49545	987	41090	41119	53281	53281					0.0832903757097938
RNRKFWVLRL	10	Unmodified	_RNRKFWVLRL_					0	0	0		ZNF282|p.N179K|1|0.29|ENSG00000170265|chr7:149198704-149198704|C/A|missense_variant	ZNF282|p.N179K|1|0.29|ENSG00000170265|chr7:149198704-149198704|C/A|missense_variant	ZNF282|p.N179K|1|0.29|ENSG00000170265|chr7:149198704-149198704|C/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.2822265625	3	463.285962	1386.83606	-5.8612	-0.0027154	0.73381	0.00033997	-5.1274	-0.0023755	463.286310063936	157.61	2.41	156.07	155.1	157.51	-1.545					177	70	4	0	0	0	0.86636	1	15573	15573		10.587	0	1	50651			49546	36320	41091	41120	53282	53282					0.15811239598815519
RNRKKGYFF	9	Unmodified	_RNRKKGYFF_					0	0	0			REV__INSRR|p.A1268Gfs*13|1|0.08|ENSG00000027644|chr1:156840964-156840965|-/C|frameshift_variant	REV__INSRR|p.A1268Gfs*13|1|0.08|ENSG00000027644|chr1:156840964-156840965|-/C|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.5762634277344	3	405.896363	1214.66726	1.0127	0.00041104	3.8518	0.0015634	4.8644	0.0019745	405.89789420799497	60.442	2.1992	60.442	59.839	62.038	0					109	52	3	0	0	0	0.027462	1	5190	5190		47.657	8.4045	1	319830	+		49547	16574	41092	41121	53283	53283					0.06851337965304083
RNRLLSNEL	9	Unmodified	_RNRLLSNEL_					0	0	0		nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-4|TPM3	nc|ENSG00000143549|P06753-3|TPM3	nc|ENSG00000143549|P06753-3|TPM3	MULTI-MSMS	OvCa99_classI_Rep5	1	557.8221435546875	2	557.820004	1113.62546	1.3816	0.00077066	0.58821	0.00032811	1.9698	0.0010988	557.82021995191	156.23	2.2146	156.23	155.84	158.05	0					83	43	3	0	0	0	0.38529	1	18286	18286		53.351	0	1	227800			49548	15075	41093	41122	53284	53284					0.07318737486139071
RNRMSLCLQ	9	Carbamidomethyl (C)	_RNRMSLC(Carbamidomethyl (C))LQ_	RNRMSLC(1)LQ		RNRMSLC(44)LQ		0	1	0			REV__ENST00000296786.7_1_5:158712588-158712648:+|nuORF	REV__ENST00000296786.7_1_5:158712588-158712648:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	589.2989501953125	2	589.300067	1176.58558	-0.25377	-0.00014955	0.27964	0.00016479	0.025864	1.5242E-05	589.3001558596478	32.848	3.7707	32.848	32.303	36.074	0					152	78	3	0	0	0	0.48047	1	1537	1537		44.377	6.5657	1	655400	+		49549	24208	41094	41123	53285	53285	285				0.0043515121953987546
RNRQQGKD	8	Unmodified	_RNRQQGKD_					0	0	0		ENSG00000226650|ENST00000435029|KIF4B;ENSG00000090889|ENST00000374403|KIF4A	ENSG00000226650|ENST00000435029|KIF4B;ENSG00000090889|ENST00000374403|KIF4A	ENSG00000226650|ENST00000435029|KIF4B	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.8251953125	2	501.265396	1000.51624	-1.553	-0.00077848	3.4205	0.0017146	1.8675	0.00093612	501.2668503224963	60.933	1.2101	58.163	57.766	58.976	-2.7702					34	22	3	0	0	0	0.028476	1	4535	4535		51.335	8.9393	1	91417			49550	9272;1850	41095	41124	53286	53286					0.016001515866605587
RNRRLQSP	8	Unmodified	_RNRRLQSP_					0	0	0			REV__ENST00000491999.5_1_16:692165-696516:+|nuORF	REV__ENST00000491999.5_1_16:692165-696516:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.799560546875	2	513.799406	1025.58426	0.45399	0.00023326	-0.84229	-0.00043277	-0.3883	-0.00019951	513.7987957920849	32.115	0.81847	29.42	28.786	29.605	-2.6954					76	29	3	0	0	0	0.74229	1	725	725		30.504	1.3541	1	87672	+		49551	26687	41096	41125	53287	53287					0.0724902123731681
RNRRRRRDWFW	11	Unmodified	_RNRRRRRDWFW_					0	0	0		ENST00000361972.8_1_10:7212945-7217999:-|nuORF	ENST00000361972.8_1_10:7212945-7217999:-|nuORF	ENST00000361972.8_1_10:7212945-7217999:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	567.7935791015625	3	568.645324	1702.91414	1.3949	0.00079318	-1.215	-0.00069093	0.17982	0.00010225	568.6444481552886	89.487	0.49457	88.185	87.938	88.433	-1.302					15	9	2	0	0	0	0.026538	1	7885	7885		3.026	0	1	21528			49552	10811	41097	41126	53288	53288					0.09080065236776136
RNRSLPRGA	9	Unmodified	_RNRSLPRGA_					0	0	0			REV__ENST00000313116.11_1_X:47307133-47307340:-|nuORF	REV__ENST00000313116.11_1_X:47307133-47307340:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.7991333007812	2	513.799406	1025.58426	0.45399	0.00023326	-0.84229	-0.00043277	-0.3883	-0.00019951	513.7987957920849	32.115	0.81847	29.42	28.786	29.605	-2.6954					76	29	3	0	0	0	0.44568	1	744	744		47.657	11.211	1	87672	+		49553	24364	41098	41127	53289	53289					0.07249021237339548
RNRTVSFLKG	10	Unmodified	_RNRTVSFLKG_					0	0	0			REV__ENSG00000030066|ENST00000378460|NUP160	REV__ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3425903320312	2	589.343646	1176.67274	-4.3129	-0.0025418	3.0093	0.0017735	-1.3036	-0.00076827	589.3453728975387	144.79	3.9151	143.81	141.71	145.63	-0.97299					242	78	5	0	0	0	0.78463	1	12093	12093		20.947	0	1	192050	+		49554	16584	41099	41128	53290	53290					0.09147016757128767
RNSETLVKV	9	Unmodified	_RNSETLVKV_					0	0	0			REV__nc|ENSG00000165240|Q04656-5|ATP7A	REV__nc|ENSG00000165240|Q04656-5|ATP7A	MULTI-MSMS	OvCa9_classI_Rep3	3	523.303955078125	2	523.303655	1044.59276	-2.1228	-0.0011108	2.0352	0.001065	-0.087543	-4.5811E-05	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.63422	1	11322	11322		27.882	1.1893	1	183010	+		49555	21072	41100	41129	53291	53291					0.07224530363282611
RNSHLRHSPPS	11	Unmodified	_RNSHLRHSPPS_					0	0	0			REV__ENSG00000186143|ENST00000335524|PRR30	REV__ENSG00000186143|ENST00000335524|PRR30	MULTI-MSMS	OvCa99_classI_Rep5	1	644.840087890625	2	644.336884	1286.65921	2.0123	0.0012966	-3.304	-0.0021289	-1.2917	-0.00083231	644.3347539343018	129.3	2.079	129.3	128.98	131.06	0					136	43	5	0	0	0	0.68399	1	15054	15054		35.152	0	1	7840100	+		49556	22560	41101	41130	53292	53292					0.027351589778845664
RNSKLVVDKP	10	Unmodified	_RNSKLVVDKP_					0	0	0		nc|ENSG00000141219|Q9BSJ5-2|MTNAP1;nc|ENSG00000141219|Q9BSJ5-3|MTNAP1;ENSG00000141219|ENST00000535032|C17orf80	nc|ENSG00000141219|Q9BSJ5-2|MTNAP1	nc|ENSG00000141219|Q9BSJ5-2|MTNAP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	579.2672729492188	2	578.345855	1154.67716	0.032628	1.887E-05	-0.10495	-6.07E-05	-0.072327	-4.183E-05	578.34564463692	67.127	0.74332	63.636	63.393	64.136	-3.4902					29	14	3	0	0	0	0.02706	1	4952	4952		23.523	9.3856	1	45994			49557	4900	41102	41131	53293	53293					0.10600481180040333
RNSKLVVDKP	10	Unmodified	_RNSKLVVDKP_					0	0	0		nc|ENSG00000141219|Q9BSJ5-2|MTNAP1;nc|ENSG00000141219|Q9BSJ5-3|MTNAP1;ENSG00000141219|ENST00000535032|C17orf80	nc|ENSG00000141219|Q9BSJ5-2|MTNAP1	nc|ENSG00000141219|Q9BSJ5-2|MTNAP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	578.345855	1154.67716	0.20868	0.00012069	-0.76044	-0.0004398	-0.55176	-0.00031911	578.3455530306314	66.261	0.74562	63.565	63.319	64.064	-2.6958	-0.035604	-0.0004836	NaN	21.686	32	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42446			49558	4900	41102	41131							0.10600481180040333
RNSKYIKVL	9	Unmodified	_RNSKYIKVL_					0	0	0			REV__ENST00000418448.1_1_13:57889178-57889514:+|nuORF	REV__ENST00000418448.1_1_13:57889178-57889514:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.8480834960938	2	560.84549	1119.67643	4.3777	0.0024552	2.3002	0.00129	6.6779	0.0037453	560.8466340657677	134.1	1.1382	132.57	132.29	133.43	-1.5257					51	22	3	0	0	0	0.38969	1	12974	12974		52.937	3.4952	1	72313	+		49559	25571	41103	41132	53294	53294					0.12137686530991232
RNSKYIKVL	9	Unmodified	_RNSKYIKVL_					0	0	0			REV__ENST00000418448.1_1_13:57889178-57889514:+|nuORF	REV__ENST00000418448.1_1_13:57889178-57889514:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	560.84549	1119.67643	0.82047	0.00046016	6.1304	0.0034382	6.9509	0.0038984	560.8487317301646	132.68	0.78911	132.46	132.08	132.87	-0.22696	-0.13343	0.00070309	NaN	52.937	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31568	+		49560	25571	41103	41132							0.12137686530991232
RNSKYIKVL	9	Unmodified	_RNSKYIKVL_					0	0	0			REV__ENST00000418448.1_1_13:57889178-57889514:+|nuORF	REV__ENST00000418448.1_1_13:57889178-57889514:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	560.84549	1119.67643	-0.79041	-0.0004433	7.611	0.0042686	6.8206	0.0038253	560.8495717513617	133.86	1.0856	132.74	132.32	133.41	-1.1226	0.14899	0.0023639	NaN	52.937	46	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79673	+		49561	25571	41103	41132							0.12137686530991232
RNSMVMESL	9	Unmodified	_RNSMVMESL_					0	0	0			REV__tr|A0A553SMG6|A0A553SMG6_NIACIMagnesiumtransportproteinCorAOS=NialliacirculansOX=1397GN=corAPE=3SV=1	REV__tr|A0A553SMG6|A0A553SMG6_NIACIMagnesiumtransportproteinCorAOS=NialliacirculansOX=1397GN=corAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	533.811279296875	2	533.754627	1065.4947	1.4501	0.00077402	4.38	0.0023379	5.8302	0.0031119	533.7566840471611	113.56	0.88379	112.48	112.2	113.08	-1.0753					16	16	2	0	0	0	0.027418	1	8406	8406		68.787	0	1	12983	+		49562	30328	41104	41133	53295	53295					-0.035427375485824086
RNSSKKKL	8	Unmodified	_RNSSKKKL_					0	0	0		ENSG00000100281|ENST00000216106|HMGXB4;ENST00000455359.5_2_22:35653519-35659991:+|nuORF	ENSG00000100281|ENST00000216106|HMGXB4	ENSG00000100281|ENST00000216106|HMGXB4	MULTI-MSMS	OvCa9_classI_Rep2	2	480.80029296875	2	480.801083	959.587613	-3.5276	-0.0016961	3.3736	0.001622	-0.15401	-7.4049E-05	480.80256125573777	150.83	1.6209	150.61	150.17	151.79	-0.22696					93	32	4	0	0	0	0.74971	2	15373	15373;15403		26.796	1.7287	1	676150			49563	2037	41105	41134	53296;53297	53296					0.10620271291338668
RNSSKKKL	8	Unmodified	_RNSSKKKL_					0	0	0		ENSG00000100281|ENST00000216106|HMGXB4;ENST00000455359.5_2_22:35653519-35659991:+|nuORF	ENSG00000100281|ENST00000216106|HMGXB4	ENSG00000100281|ENST00000216106|HMGXB4	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.80126953125	2	480.801083	959.587613	-3.2353	-0.0015556	3.0585	0.0014705	-0.1769	-8.5052E-05	480.80242897085384	151.49	1.9682	150.06	149.63	151.6	-1.4344					128	43	5	0	0	0	0.73938	1	14969	14969		31.955	3.7006	1	1260100			49564	2037	41105	41134	53298	53298					0.10620271291338668
RNSSLDLH	8	Unmodified	_RNSSLDLH_					0	0	0			REV__ENSG00000182704|ENST00000333090|TSKU	REV__ENSG00000182704|ENST00000333090|TSKU	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.7669372558594	2	471.243598	940.472643	-0.18754	-8.8379E-05	2.7137	0.0012788	2.5261	0.0011904	471.2461150266486	55.503	0.45625	52.208	52.059	52.516	-3.2944					10	8	2	0	0	0	0.028476	1	3513	3513		47.916	17.412	1	11689	+		49565	22313	41106	41135	53299	53299					2.5420895212846517E-05
RNSSVRLR	8	Unmodified	_RNSSVRLR_					0	0	0		ENST00000421767.1_1_7:65842866-65843457:-|nuORF	ENST00000421767.1_1_7:65842866-65843457:-|nuORF	ENST00000421767.1_1_7:65842866-65843457:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	494.2911071777344	2	494.293956	986.57336	-1.5067	-0.00074474	-3.1554	-0.0015597	-4.6621	-0.0023044	494.292235415217	64.069	0.97976	64.069	63.814	64.793	0					47	23	4	0	0	0	0.47824	1	5812	5812		79.713	13.815	1	4375700			49566	11686	41107	41136	53300	53300					0.07953618863041356
RNSVTPLASPE	11	Unmodified	_RNSVTPLASPE_					0	0	0		nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3;ENST00000487989.1_1_10:6264793-6268376:+|nuORF;ENST00000461744.5_1_10:6267193-6270182:+|nuORF;ENST00000490474.5_1_10:6267193-6274861:+|nuORF;ENST00000477914.5_1_10:6267193-6274902:+|nuORF;ENST00000467491.5_1_10:6267193-6273265:+|nuORF	nc|ENSG00000170525|Q16875-3|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	MULTI-MSMS	OvCa99_classI_Rep5	1	585.8228759765625	2	585.809302	1169.60405	1.7265	0.0010114	0.58287	0.00034145	2.3094	0.0013528	585.8102019200584	133.66	1.9611	133.66	133.35	135.31	0					87	42	4	0	0	0	0.26031	1	15636	15636		71.877	9.7701	1	640670			49567	7114	41108	41137	53301	53301					0.026033076667545174
RNTDEMVEL	9	Oxidation (M)	_RNTDEM(Oxidation (M))VEL_		RNTDEM(1)VEL		RNTDEM(44)VEL	0	0	1		HNRNPK-UBQLN1|1|fusion;HNRNPK-UBQLN1|2|fusion;ENST00000483135.1_1_9:86591819-86593167:-|nuORF;nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;HNRNPK|p.Y280Mfs*4|1|0.05|ENSG00000165119|chr9:83971997-83971997|A/-|frameshift_variant;HNRNPK-PTMS|1|fusion	HNRNPK-UBQLN1|1|fusion;nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	OvCa9_classI_Rep3	3	561.75830078125	2	561.75842	1121.50229	1.0872	0.00061075	-1.0061	-0.00056519	0.081089	4.5553E-05	561.757717613742	63.682	3.3714	60.689	60	63.371	-2.9933					120	66	3	0	0	0	0.48047	1	2424	2424		44.377	7.9304	1	89773			49568	6523;14486	41109	41138	53302	53302		206			-0.05360306747297727
RNTKIRAEL	9	Unmodified	_RNTKIRAEL_					0	0	0			REV__ENSG00000100603|ENST00000261531|SNW1	REV__ENSG00000100603|ENST00000261531|SNW1	MULTI-MSMS	OvCa9_classI_Rep2	2	550.8294677734375	2	550.830372	1099.64619	-1.0356	-0.00057041	0.70662	0.00038923	-0.32893	-0.00018119	550.8306545047046	34.381	0.8918	31.671	31.415	32.306	-2.7097					29	17	2	0	0	0	0.59259	1	1307	1307		32.812	4.9302	1	88854	+		49569	17436	41110	41139	53303	53303					0.10035327865784893
RNTKIRAEL	9	Unmodified	_RNTKIRAEL_					0	0	0			REV__ENSG00000100603|ENST00000261531|SNW1	REV__ENSG00000100603|ENST00000261531|SNW1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	550.830372	1099.64619	0.70083	0.00038604	-2.6282	-0.0014477	-1.9274	-0.0010617	550.828645470516	34.339	0.24879	31.551	31.449	31.698	-2.7881	-0.059924	-0.0035793	NaN	32.812	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7770.8	+		49570	17436	41110	41139							0.10035327865784893
RNTKLPPLP	9	Unmodified	_RNTKLPPLP_					0	0	0		ENSG00000074047|ENST00000361492|GLI2;nc|ENSG00000074047|P10070|GLI2;nc|ENSG00000074047|P10070-4|GLI2;nc|ENSG00000074047|P10070-3|GLI2;ENST00000452692.5_1_2:121728002-121748192:+|nuORF;ENST00000438299.5_1_2:121728002-121748192:+|nuORF;nc|ENSG00000074047|P10070-2|GLI2;nc|ENSG00000074047|P10070-1|GLI2	ENSG00000074047|ENST00000361492|GLI2	ENSG00000074047|ENST00000361492|GLI2	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.360107421875	2	518.319109	1034.62366	-0.8347	-0.00043264	-3.5632	-0.0018469	-4.3979	-0.0022795	518.3172280216025	136.68	3.3774	135.59	134.48	137.86	-1.0858					106	68	2	0	0	0	0.027441	1	11127	11127		65.803	7.9919	1	33328			49571	1505	41111	41140	53304	53304					0.10773728468188892
RNTKTPVK	8	Unmodified	_RNTKTPVK_					0	0	0		ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	ENSG00000102595|ENST00000376747|UGGT2	MULTI-MSMS	OvCa99_classI_Rep5	1	472.28948974609375	2	472.287808	942.561064	1.2362	0.00058385	0.50135	0.00023678	1.7376	0.00082063	472.28794462179513	155.21	0.80492	155.21	154.88	155.68	0					35	15	3	0	0	0	0.7549	1	18199	18199		24.203	2.5004	1	490820			49572	2246	41112	41141	53305	53305					0.08748582399982752
RNTYGKKRK	9	Unmodified	_RNTYGKKRK_					0	0	0			REV__L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|106|2|sense	REV__L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|106|2|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8429565429688	2	575.843813	1149.67307	-3.1773	-0.0018296	2.254	0.0012979	-0.92334	-0.0005317	575.8447773729116	141.87	3.8997	140.86	138.96	142.86	-1.0106					243	78	6	0	0	0	0.67509	1	11756	11756		23.042	3.7798	1	129610	+		49573	28557	41113	41142	53306	53306					0.10422436476983421
RNVEKRRRAEK	11	Unmodified	_RNVEKRRRAEK_					0	0	0			REV__ENSG00000164934|ENST00000612750|DCAF13	REV__ENSG00000164934|ENST00000612750|DCAF13	MULTI-MSMS	OvCa9_classI_Rep3	3	481.2824401855469	3	481.286802	1440.83858	-6.6786	-0.0032143	-0.11204	-5.3925E-05	-6.7906	-0.0032682	481.2868612614486	161.01	3.7232	159.65	158.49	162.21	-1.3523					206	77	3	0	0	0	0.72557	1	14136	14136		8.0344	1.3747	1	127690	+		49574	21039	41114	41143	53307	53307					0.13579043265849577
RNVFIRQHWDQ	11	Unmodified	_RNVFIRQHWDQ_					0	0	0			REV__ENSG00000144130|ENST00000688554|NT5DC4	REV__ENSG00000144130|ENST00000688554|NT5DC4	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.8072814941406	3	500.260253	1497.75893	-0.841	-0.00042072	-2.8846	-0.0014431	-3.7256	-0.0018638	500.59161692700076	75.354	0.19832	72.944	72.822	73.02	-2.4106					5	3	2	0	0	0	0.026277	1	3794	3794		23.378	6.2112	1	6259.9	+		49575	19891	41115	41144	53308	53308					0.02995976591842009
RNVGSQRPVLI	11	Unmodified	_RNVGSQRPVLI_					0	0	0		ENST00000209875.8_1_12:54632788-54632935:-|nuORF	ENST00000209875.8_1_12:54632788-54632935:-|nuORF	ENST00000209875.8_1_12:54632788-54632935:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8702392578125	2	619.870028	1237.7255	-3.6059	-0.0022352	2.5915	0.0016064	-1.0145	-0.00062885	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.69808	1	12731	12731		30.318	1.1477	1	664560			49576	9658	41116	41145	53309	53309					0.11614974819940471
RNVLPFHLV	9	Unmodified	_RNVLPFHLV_					0	0	0			REV__nc|ENSG00000168907|Q68DD2-3|PLA2G4F	REV__nc|ENSG00000168907|Q68DD2-3|PLA2G4F	MULTI-MSMS	OvCa9_classI_Rep2	2	547.824951171875	2	547.827101	1093.63965	-3.828	-0.0020971	2.5365	0.0013895	-1.2916	-0.00070755	547.8283345690601	154.13	2.0065	153.91	153.15	155.16	-0.22697					93	45	3	0	0	0	0.6926	1	15735	15735		20.482	1.1219	1	59433	+		49577	21415	41117	41146	53310	53310					0.09657434705081869
RNVLTEKLQ	9	Unmodified	_RNVLTEKLQ_					0	0	0			REV__ENSG00000174799|ENST00000257287|CEP135	REV__ENSG00000174799|ENST00000257287|CEP135	MSMS	OvCa99_classI_Rep5	1	550.825439453125	2	550.824755	1099.63496	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.157	1	34.157	33.657	34.657	0								0	0	0	0.16939	1	1625	1625		52.937	1.744	1		+		49578	21853	41118	41147	53311	53311					0.0891250577167284
RNVTLGPTAIM	11	Unmodified	_RNVTLGPTAIM_					0	0	0		SLC26A11|p.D99N|1|0.14|ENSG00000181045|chr17:80222715-80222715|G/A|missense_variant	SLC26A11|p.D99N|1|0.14|ENSG00000181045|chr17:80222715-80222715|G/A|missense_variant	SLC26A11|p.D99N|1|0.14|ENSG00000181045|chr17:80222715-80222715|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	586.822509765625	2	586.82644	1171.63833	-3.1356	-0.00184	-1.6799	-0.00098583	-4.8155	-0.0028259	586.8253279417393	148.8	1.3036	148.57	148.17	149.47	-0.22696					68	25	4	0	0	0	0.72473	1	15084	15084		19.104	0.84144	1	137330			49579	32827	41119	41148	53312	53312					0.059374325540147765
RNVTQRIRLFR	11	Unmodified	_RNVTQRIRLFR_					0	0	0			REV__ENSG00000146676|ENST00000395699|PURB	REV__ENSG00000146676|ENST00000395699|PURB	MULTI-MSMS	OvCa9_classI_Rep3	3	486.9587707519531	3	486.963659	1457.86915	-7.2824	-0.0035463	-2.4216	-0.0011792	-9.704	-0.0047255	486.9623381995862	161.08	3.4384	159.71	158.52	161.96	-1.3692					219	70	4	0	0	0	0.72545	1	13996	13996		9.6461	0	1	133400	+		49580	20026	41120	41149	53313	53313					0.1585282165085573
RNVVGVLLV	9	Unmodified	_RNVVGVLLV_					0	0	0		ENSG00000188060|ENST00000465518|RAB42	ENSG00000188060|ENST00000465518|RAB42	ENSG00000188060|ENST00000465518|RAB42	MULTI-MSMS	OvCa9_classI_Rep2	2	484.81561279296875	2	484.816202	967.617851	0.098293	4.7654E-05	-0.21042	-0.00010202	-0.11213	-5.4362E-05	484.8159176312288	110.29	1.4347	110.12	109.46	110.9	-0.17237					55	28	3	0	0	0	0.44294	1	10387	10387		47.916	1.9636	1	136950			49581	8450	41121	41150	53314	53314					0.1327462995652695
RNWSSILFLL	10	Unmodified	_RNWSSILFLL_					0	0	0			REV__ENST00000608933.5_1_4:89181528-89181630:-|nuORF	REV__ENST00000608933.5_1_4:89181528-89181630:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	417.9063720703125	3	416.908157	1247.70264	-0.72056	-0.00030041	-3.5386	-0.0014753	-4.2592	-0.0017757	416.90680176954885	51.241	0.49665	48.428	48.203	48.7	-2.8129					16	9	2	0	0	0	0.027006	1	3323	3323		30.569	0	1	22221	+		49582	28099	41122	41151	53315	53315					0.08869955702471088
RNWSSILFLL	10	Unmodified	_RNWSSILFLL_					0	0	0			REV__ENST00000608933.5_1_4:89181528-89181630:-|nuORF	REV__ENST00000608933.5_1_4:89181528-89181630:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	416.908157	1247.70264	-0.35704	-0.00014885	-5.611	-0.0023393	-5.968	-0.0024881	416.90564054125866	51.741	0.4525	48.568	48.274	48.726	-3.1734	0.069795	-0.001734	NaN	37.508	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22433	+		49583	28099	41122	41151							0.08869955702471088
RNWWHFSSL	9	Unmodified	_RNWWHFSSL_					0	0	0		ENST00000414812.5_1_2:70485050-70486579:+|nuORF	ENST00000414812.5_1_2:70485050-70486579:+|nuORF	ENST00000414812.5_1_2:70485050-70486579:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	616.281494140625	2	616.801614	1231.58868	-1.0826	-0.00066777	-0.90211	-0.00055642	-1.9847	-0.0012242	616.8009753045797	104.45	1.2071	104.45	104.19	105.4	0					55	27	3	0	0	0	0.027462	1	11830	11830		26.693	0	1	1170400			49584	11583	41123	41152	53316	53316					-0.01785514339758265
RNYFVRDK	8	Unmodified	_RNYFVRDK_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2;ENST00000478436.1_1_3:145795570-145803239:-|nuORF	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7618408203125	2	549.296165	1096.57778	0.88095	0.0004839	1.3819	0.00075909	2.2629	0.001243	549.2971767590186	150.7	0.59984	150.7	150.34	150.94	0					15	11	2	0	0	0	0.028476	1	17621	17621		30.504	2.6214	1	25441			49585	5651	41124	41153	53317	53317					0.03335083285946894
RNYKRIKQ	8	Unmodified	_RNYKRIKQ_					0	0	0			REV__nc|ENSG00000184110|Q99613-2|EIF3C	REV__nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.827880859375	2	553.333082	1104.65161	1.8112	0.0010022	-0.31768	-0.00017578	1.4935	0.00082639	553.3326889147918	87.604	0.54344	87.604	87.378	87.921	0					30	12	3	0	0	0	0.028476	1	9292	9292		42.474	10.945	1	2551200	+		49586	22404	41125	41154	53318	53318					0.10347051448275124
RNYKRRRRSWR	11	Unmodified	_RNYKRRRRSWR_					0	0	0		ENST00000542829.1_2_13:30002925-30054358:+|nuORF	ENST00000542829.1_2_13:30002925-30054358:+|nuORF	ENST00000542829.1_2_13:30002925-30054358:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.8153686523438	3	545.317207	1632.92979	-0.59096	-0.00032226	1.7972	0.00098003	1.2062	0.00065776	545.3170785536169	49.23	1.0448	49.23	48.986	50.031	0					56	23	4	0	0	0	0.026448	1	3686	3686		9.2118	1.5324	1	2202900			49587	13482	41126	41155	53319	53319					0.13864351753818482
RNYTRNNDYVR	11	Unmodified	_RNYTRNNDYVR_					0	0	0		tr|A0A7D6VMC5|A0A7D6VMC5_9CLOTPhenylalanine--tRNAligasebetasubunitOS=ClostridiumintestinaleOX=36845GN=pheTPE=3SV=1	tr|A0A7D6VMC5|A0A7D6VMC5_9CLOTPhenylalanine--tRNAligasebetasubunitOS=ClostridiumintestinaleOX=36845GN=pheTPE=3SV=1	tr|A0A7D6VMC5|A0A7D6VMC5_9CLOTPhenylalanine--tRNAligasebetasubunitOS=ClostridiumintestinaleOX=36845GN=pheTPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	491.7876281738281	3	490.911401	1469.71237	-0.42411	-0.0002082	2.0153	0.00098935	1.5912	0.00078115	490.91225587690724	73.486	0.49826	70.999	70.727	71.225	-2.4873					10	9	2	0	0	0	0.026068	1	3602	3602		34.087	9.8547	1	14164			49588	34653	41127	41156	53320	53320					-0.0036950803012132383
RNYTRNNDYVR	11	Unmodified	_RNYTRNNDYVR_					0	0	0		tr|A0A7D6VMC5|A0A7D6VMC5_9CLOTPhenylalanine--tRNAligasebetasubunitOS=ClostridiumintestinaleOX=36845GN=pheTPE=3SV=1	tr|A0A7D6VMC5|A0A7D6VMC5_9CLOTPhenylalanine--tRNAligasebetasubunitOS=ClostridiumintestinaleOX=36845GN=pheTPE=3SV=1	tr|A0A7D6VMC5|A0A7D6VMC5_9CLOTPhenylalanine--tRNAligasebetasubunitOS=ClostridiumintestinaleOX=36845GN=pheTPE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	490.911401	1469.71237	-0.21148	-0.00010382	1.8697	0.00091785	1.6582	0.00081403	490.9122217307094	71.005	0.86786	71.005	70.761	71.629	0	0.0031913	-3.1438E-05	NaN	34.087	51	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1588400			49589	34653	41127	41156							-0.0036950803012132383
RNYVGTSQKET	11	Unmodified	_RNYVGTSQKET_					0	0	0			REV__nc|ENSG00000163431|P29536-2|LMOD1	REV__nc|ENSG00000163431|P29536-2|LMOD1	MULTI-MSMS	OvCa99_classI_Rep5	1	428.2164611816406	3	428.217719	1281.63133	-0.45656	-0.00019551	-2.9581	-0.0012667	-3.4146	-0.0014622	428.21657378136337	42.346	1.5502	42.346	41.55	43.1	0					112	35	5	0	0	0	0.67685	1	2716	2716		37.6	0.091722	1	5010600	+		49590	20836	41128	41157	53321	53321					0.001777912071247556
RNYVLRLFP	9	Unmodified	_RNYVLRLFP_					0	0	0			REV__tr|A0A7D6ZW63|A0A7D6ZW63_9CLOTFAD-bindingoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17760PE=3SV=1	REV__tr|A0A7D6ZW63|A0A7D6ZW63_9CLOTFAD-bindingoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17760PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3414916992188	2	589.345658	1176.67676	-2.3488	-0.0013843	-2.3246	-0.00137	-4.6735	-0.0027543	589.3441165076871	144.49	4.0102	144.26	142.11	146.12	-0.22696					206	80	3	0	0	0	0.69895	1	14556	14556		18.324	0.8564	1	105920	+		49591	32273	41129	41158	53322	53322					0.0954910625082448
RPAAGAMEL	9	Unmodified	_RPAAGAMEL_					0	0	0			REV__ENST00000533031.5_1_8:144776853-144777381:+|nuORF	REV__ENST00000533031.5_1_8:144776853-144777381:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.23883056640625	2	458.23947	914.464386	-0.12549	-5.7504E-05	-3.1286	-0.0014337	-3.2541	-0.0014912	458.23777585237934	56.342	1.5704	53.047	52.516	54.086	-3.2944					84	30	4	0	0	0	0.46377	1	3611	3611		45.952	1.4209	1	498190	+		49592	27251	41130	41159	53323	53323					0.003732718485366604
RPAALATSLCQ	11	Unmodified	_RPAALATSLCQ_					0	0	0		ENST00000413916.5_1_7:44807392-44807602:+|nuORF	ENST00000413916.5_1_7:44807392-44807602:+|nuORF	ENST00000413916.5_1_7:44807392-44807602:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	565.7990112304688	2	565.802965	1129.59138	-2.4631	-0.0013936	-4.3178	-0.002443	-6.7808	-0.0038366	565.8004097051485	35.939	0.94262	33.229	32.95	33.893	-2.7097					48	18	4	0	0	0	0.48812	1	1498	1498		54.722	16.911	1	164810			49593	11570	41131	41160	53324	53324					0.03176573002861005
RPAALRGALL	10	Unmodified	_RPAALRGALL_					0	0	0		ENSG00000026297|ENST00000508775|RNASET2;ENST00000366855.10_1_6:167369102-167369700:-|nuORF;nc|ENSG00000026297|O00584-2|RNASET2	ENSG00000026297|ENST00000508775|RNASET2	ENSG00000026297|ENST00000508775|RNASET2	MULTI-MSMS	OvCa9_classI_Rep2	2	519.3323364257812	2	519.33255	1036.65055	0.43803	0.00022748	-1.2797	-0.0006646	-0.84169	-0.00043712	519.3319823191914	72.351	2.5617	69.844	69.226	71.788	-2.5071					171	48	5	0	0	0	0.46756	1	5844	5844		58.782	12.83	1	1130700			49594	1050	41132	41161	53325	53325					0.13368837079360674
RPAALRGALL	10	Unmodified	_RPAALRGALL_					0	0	0		ENSG00000026297|ENST00000508775|RNASET2;ENST00000366855.10_1_6:167369102-167369700:-|nuORF;nc|ENSG00000026297|O00584-2|RNASET2	ENSG00000026297|ENST00000508775|RNASET2	ENSG00000026297|ENST00000508775|RNASET2	MULTI-MSMS	OvCa9_classI_Rep3	3	519.3331909179688	2	519.33255	1036.65055	0.36573	0.00018993	-1.1243	-0.00058388	-0.75855	-0.00039394	519.332039905815	72.479	2.9684	69.876	69.23	72.198	-2.6023					206	57	5	0	0	0	0.67931	2	3445	3445;3449		32.812	1.2826	1	2143000			49595	1050	41132	41161	53326;53327	53326					0.13368837079360674
RPAALRGALLG	11	Unmodified	_RPAALRGALLG_					0	0	0		ENSG00000026297|ENST00000508775|RNASET2;ENST00000366855.10_1_6:167369102-167369700:-|nuORF;nc|ENSG00000026297|O00584-2|RNASET2	ENSG00000026297|ENST00000508775|RNASET2	ENSG00000026297|ENST00000508775|RNASET2	MULTI-MSMS	OvCa9_classI_Rep3	3	547.8430786132812	2	547.843282	1093.67201	-0.1914	-0.00010486	-1.5293	-0.00083784	-1.7207	-0.0009427	547.8423180016147	71.547	3.227	68.945	68.229	71.456	-2.6023					126	61	3	0	0	0	0.60323	3	3354	3347;3354;3360		44.377	8.7589	1	1856100			49596	1050	41133	41162	53328;53329;53330	53329					0.12892222108075657
RPAALRLLL	9	Unmodified	_RPAALRLLL_					0	0	0		ENSG00000131477|ENST00000253796|RAMP2;nc|ENSG00000131477|O60895-2|RAMP2	ENSG00000131477|ENST00000253796|RAMP2	ENSG00000131477|ENST00000253796|RAMP2	MULTI-MSMS	OvCa9_classI_Rep2	2	511.84393310546875	2	511.845294	1021.67603	-0.43264	-0.00022145	-0.28762	-0.00014722	-0.72026	-0.00036866	511.8451091045373	98.476	2.5216	97.583	96.826	99.347	-0.89305					131	50	4	0	0	0	0.61208	1	8946	8946		30.504	5.0535	1	744040			49597	4071	41134	41163	53331	53331					0.16606311601799462
RPAANPIQF	9	Unmodified	_RPAANPIQF_					0	0	0		ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	ENSG00000167325|ENST00000300738|RRM1	MSMS	OvCa9_classI_Rep3	3	507.2811279296875	2	507.279983	1012.54541	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.959	1	78.636	78.136	79.136	-2.3226								0	0	0	0.16727	1	4469	4469		58.782	12.83	1				49598	6781	41135	41164	53332	53332					0.039642958829290365
RPAARSPV	8	Unmodified	_RPAARSPV_					0	0	0			REV__ENSG00000255181|ENST00000542437|CCDC166	REV__ENSG00000255181|ENST00000542437|CCDC166	MULTI-MSMS	OvCa9_classI_Rep4_	4	427.2540283203125	2	427.253769	852.492984	0.47927	0.00020477	-0.70424	-0.00030089	-0.22497	-9.6119E-05	427.25343840755255	38.849	1.9995	35.923	35.502	37.502	-2.9264					103	39	4	0	0	0	0.74229	1	1587	1587		30.504	1.3541	1	1592600	+		49599	23523	41136	41165	53333	53333					0.0608375753998871
RPAAVKIM	8	Unmodified	_RPAAVKIM_					0	0	0			REV__ENST00000496418.5_1_3:132277817-132297733:-|nuORF	REV__ENST00000496418.5_1_3:132277817-132297733:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	443.2724304199219	2	443.270573	884.526593	0.83529	0.00037026	3.5014	0.001552	4.3366	0.0019223	443.27205335230417	138.39	1.523	138.16	137.68	139.21	-0.22696					79	30	3	0	0	0	0.75661	1	13776	13776		19.36	0	1	138730	+		49600	23437	41137	41166	53334	53334					0.07971042987537658
RPAAVKIM	8	Unmodified	_RPAAVKIM_					0	0	0			REV__ENST00000496418.5_1_3:132277817-132297733:-|nuORF	REV__ENST00000496418.5_1_3:132277817-132297733:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	443.27349853515625	2	443.270573	884.526593	1.1525	0.00051086	2.9913	0.001326	4.1438	0.0018368	443.27180064343105	139.52	2.0991	138.02	137.22	139.32	-1.4952					91	40	3	0	0	0	0.75991	1	13644	13644		21.702	1.2205	1	858700	+		49601	23437	41137	41166	53335	53335					0.07971042987537658
RPACDTGRQRL	11	Unmodified	_RPACDTGRQRL_					0	0	0		ENST00000486463.5_1_2:96687909-96693504:-|nuORF;nc|ENSG00000186281|Q6NUI2|GPAT2;ENSG00000186281|ENST00000434632|GPAT2;ENST00000484440.5_1_2:96688852-96698107:-|nuORF;ENST00000471757.5_1_2:96687909-96690664:-|nuORF;nc|ENSG00000186281|Q6NUI2-5|GPAT2	ENST00000486463.5_1_2:96687909-96693504:-|nuORF	ENST00000486463.5_1_2:96687909-96693504:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	636.831298828125	2	636.83312	1271.65169	-1.7858	-0.0011373	-0.89633	-0.00057081	-2.6822	-0.0017081	636.8324728974585	33.272	1.1921	30.562	30.321	31.513	-2.7097					69	23	4	0	0	0	0.65267	1	1169	1169		37.812	3.8899	1	314610			49602	8327	41138	41167	53336	53336					0.026726833859584076
RPAEILILSLS	11	Unmodified	_RPAEILILSLS_					0	0	0			REV__ENST00000275364.7_1_7:2769559-2769763:-|nuORF	REV__ENST00000275364.7_1_7:2769559-2769763:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	606.369873046875	2	606.371538	1210.72852	-3.14	-0.001904	-0.05994	-3.6346E-05	-3.1999	-0.0019404	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.72473	1	15022	15022		19.104	0	1	257720	+		49603	24093	41139	41168	53337	53337					0.13158805154102993
RPAEKKNYL	9	Unmodified	_RPAEKKNYL_					0	0	0		ENST00000327892.12_1_6:30688201-30690330:+|nuORF	ENST00000327892.12_1_6:30688201-30690330:+|nuORF	ENST00000327892.12_1_6:30688201-30690330:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.8165283203125	2	559.819473	1117.62439	1.8922	0.0010593	-1.9168	-0.0010731	-0.024592	-1.3767E-05	559.8182232305395	35.669	1.0488	32.82	32.54	33.589	-2.849					55	20	4	0	0	0	0.28934	1	1155	1155		64.207	5.9773	1	213120			49604	10419	41140	41169	53338	53338					0.07028523117219265
RPAEKLAKI	9	Unmodified	_RPAEKLAKI_					0	0	0			REV__ENST00000484010.1_1_12:32101431-32101545:+|nuORF	REV__ENST00000484010.1_1_12:32101431-32101545:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.8145141601562	2	513.326934	1024.63931	-0.42909	-0.00022026	-0.43728	-0.00022447	-0.86637	-0.00044473	513.3264987774254	74.269	1.0923	72.298	72.009	73.102	-1.9711					37	20	3	0	0	0	0.027433	1	6160	6160		42.396	5.237	1	78439	+		49605	26542	41141	41170	53339	53339					0.12798014985219197
RPAEKLVTSM	10	Oxidation (M)	_RPAEKLVTSM(Oxidation (M))_		RPAEKLVTSM(1)		RPAEKLVTSM(96)	0	0	1		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	OvCa9_classI_Rep2	2	574.3104248046875	2	574.310623	1146.60669	-0.76355	-0.00043852	0.30368	0.0001744	-0.45987	-0.00026411	574.3105867334499	44.832	1.7458	42.122	41.702	43.448	-2.7097					87	34	4	0	0	0	0.18931	5	2579	2568;2574;2579;2593;2599		96.034	22.874	1	385060			49606	8656	41142	41171	53340;53341;53342;53343;53344	53342		259			0.03925439800059394
RPAEKLVTSM	10	Oxidation (M)	_RPAEKLVTSM(Oxidation (M))_		RPAEKLVTSM(1)		RPAEKLVTSM(140)	0	0	1		ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	ENSG00000196878|ENST00000356082|LAMB3	MULTI-MSMS	OvCa9_classI_Rep4_	4	574.311279296875	2	574.310623	1146.60669	-1.4501	-0.00083281	0.87698	0.00050366	-0.57312	-0.00032915	574.3110384317821	44.879	2.5338	41.84	41.514	44.047	-3.0385					111	48	4	0	0	0	0.029272	6	2251	2242;2251;2263;2276;2289;2302		136.99	41.174	1	1909000			49607	8656	41142	41171	53345;53346;53347;53348;53349;53350	53346		259			0.03925439800059394
RPAEPRARL	9	Unmodified	_RPAEPRARL_					0	0	0		ENST00000409371.7_1_4:6202075-6202225:-|nuORF	ENST00000409371.7_1_4:6202075-6202225:-|nuORF	ENST00000409371.7_1_4:6202075-6202225:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.317626953125	2	533.317432	1064.62031	-0.079824	-4.2571E-05	0.098611	5.2591E-05	0.018788	1.002E-05	533.3172902188884	35.614	1.0487	32.765	32.491	33.539	-2.849					43	20	3	0	0	0	0.42676	1	1160	1160		49.442	13.823	1	240560			49608	11523	41143	41172	53351	53351					0.09058478414158344
RPAEPRARL	9	Unmodified	_RPAEPRARL_					0	0	0		ENST00000409371.7_1_4:6202075-6202225:-|nuORF	ENST00000409371.7_1_4:6202075-6202225:-|nuORF	ENST00000409371.7_1_4:6202075-6202225:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	533.317432	1064.62031	-3.3705	-0.0017975	3.0732	0.001639	-0.29723	-0.00015852	533.3188832691937	35.818	0.89471	33.108	32.9	33.795	-2.7097	0.17176	0.0026909	NaN	49.442	31	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46470			49609	11523	41143	41172							0.09058478414158344
RPAFFAERL	9	Unmodified	_RPAFFAERL_					0	0	0		ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8116455078125	2	553.808908	1105.60326	1.5294	0.00084698	-0.062084	-3.4382E-05	1.4673	0.0008126	553.8088008081716	85.49	1.28	82.843	82.561	83.841	-2.6463					74	25	3	0	0	0	0.3076	2	7181	7181;7191		62.107	8.7501	1	285720			49610	4672	41144	41173	53352;53353	53352					0.054685578083763176
RPAFKGLTF	9	Unmodified	_RPAFKGLTF_					0	0	0		ENSG00000156804|ENST00000517956|FBXO32;ENST00000287396.2_1_8:124515615-124544254:-|nuORF;nc|ENSG00000156804|Q969P5-2|FBXO32	ENSG00000156804|ENST00000517956|FBXO32	ENSG00000156804|ENST00000517956|FBXO32	MULTI-MSMS	OvCa9_classI_Rep2	2	518.8002319335938	2	518.800552	1035.58655	-1.3801	-0.00071598	0.63346	0.00032864	-0.7466	-0.00038734	518.8008669245285	85.064	2.3225	83.518	83.053	85.375	-1.5462					102	45	3	0	0	0	0.022645	10	7329	7323;7329;7335;7341;7347;7353;7360;7367;7373;7380		143.89	75.1	1	2052700			49611	5858	41145	41174	53354;53355;53356;53357;53358;53359;53360;53361;53362;53363	53355					0.07018056922402138
RPAFKGLTF	9	Unmodified	_RPAFKGLTF_					0	0	0		ENSG00000156804|ENST00000517956|FBXO32;ENST00000287396.2_1_8:124515615-124544254:-|nuORF;nc|ENSG00000156804|Q969P5-2|FBXO32	ENSG00000156804|ENST00000517956|FBXO32	ENSG00000156804|ENST00000517956|FBXO32	MULTI-MSMS	OvCa9_classI_Rep3	3	518.8005981445312	2	518.800552	1035.58655	-0.72304	-0.00037511	-0.033982	-1.763E-05	-0.75702	-0.00039274	518.8004803378869	86.125	2.4333	83.905	83.486	85.919	-2.2204					112	47	3	0	0	0	0.015391	10	5087	5087;5093;5098;5104;5110;5117;5123;5129;5137;5144		152.47	73.02	1	3221600			49612	5858	41145	41174	53364;53365;53366;53367;53368;53369;53370;53371;53372;53373	53364					0.07018056922402138
RPAFKGLTF	9	Unmodified	_RPAFKGLTF_					0	0	0		ENSG00000156804|ENST00000517956|FBXO32;ENST00000287396.2_1_8:124515615-124544254:-|nuORF;nc|ENSG00000156804|Q969P5-2|FBXO32	ENSG00000156804|ENST00000517956|FBXO32	ENSG00000156804|ENST00000517956|FBXO32	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.801513671875	2	518.800552	1035.58655	0.67015	0.00034768	-2.9763	-0.0015441	-2.3061	-0.0011964	518.7989579233234	86.507	2.5973	83.88	83.413	86.01	-2.6269					118	51	3	0	0	0	0.059253	7	7297	7297;7309;7321;7332;7344;7356;7383		113.41	60.06	1	2504900			49613	5858	41145	41174	53374;53375;53376;53377;53378;53379;53380	53374					0.07018056922402138
RPAFPFGGFS	10	Unmodified	_RPAFPFGGFS_					0	0	0		ENST00000421767.1_1_7:65842866-65843457:-|nuORF	ENST00000421767.1_1_7:65842866-65843457:-|nuORF	ENST00000421767.1_1_7:65842866-65843457:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.7736206054688	2	541.774534	1081.53451	-1.6897	-0.00091542	1.3037	0.0007063	-0.38599	-0.00020912	541.774937602495	43.104	1.3034	40.097	39.539	40.842	-3.0074					49	24	4	0	0	0	0.66721	1	2051	2051		34.173	1.3601	1	223220			49614	11686	41146	41175	53381	53381					-0.002991064913203445
RPAFPFGGFS	10	Unmodified	_RPAFPFGGFS_					0	0	0		ENST00000421767.1_1_7:65842866-65843457:-|nuORF	ENST00000421767.1_1_7:65842866-65843457:-|nuORF	ENST00000421767.1_1_7:65842866-65843457:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	541.774534	1081.53451	-0.64801	-0.00035107	5.5362	0.0029994	4.8882	0.0026483	541.7773933327941	40.078	0.54853	40.078	39.883	40.432	0	0.060884	0.0042926	NaN	34.173	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	587700			49615	11686	41146	41175							-0.002991064913203445
RPAFPFGGFS	10	Unmodified	_RPAFPFGGFS_					0	0	0		ENST00000421767.1_1_7:65842866-65843457:-|nuORF	ENST00000421767.1_1_7:65842866-65843457:-|nuORF	ENST00000421767.1_1_7:65842866-65843457:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	541.774534	1081.53451	0.2679	0.00014514	-0.68214	-0.00036956	-0.41424	-0.00022442	541.7741455816898	42.585	0.4442	39.876	39.571	40.016	-2.7097	-0.14107	-0.0024453	NaN	34.173	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35248			49616	11686	41146	41175							-0.002991064913203445
RPAFSKLE	8	Unmodified	_RPAFSKLE_					0	0	0		nc|ENSG00000182541|P53671-2|LIMK2;ENSG00000182541|ENST00000331728|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	nc|ENSG00000182541|P53671-2|LIMK2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	474.251708984375	2	474.269084	946.523616	0.1442	6.8392E-05	0.86001	0.00040788	1.0042	0.00047627	474.26938205533696	63.273	1.2529	59.798	59.433	60.686	-3.475					38	25	2	0	0	0	0.028476	1	4433	4433		32.812	9.7699	1	181980			49617	8005	41147	41176	53382	53382					0.04821491134373446
RPAFVPPQQ	9	Unmodified	_RPAFVPPQQ_					0	0	0			REV__ENST00000307126.9_1_6:43594680-43596795:-|nuORF	REV__ENST00000307126.9_1_6:43594680-43596795:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.28759765625	2	520.287808	1038.56106	-1.3123	-0.00068278	-2.5268	-0.0013147	-3.8391	-0.0019974	520.2863599856137	42.316	0.60667	39.336	39.064	39.67	-2.9804					27	11	3	0	0	0	0.55588	1	1954	1954		37.159	2.0071	1	345460	+		49618	24304	41148	41177	53383	53383					0.04332582399979401
RPAGEKGV	8	Unmodified	_RPAGEKGV_					0	0	0			REV__ENST00000490170.5_1_1:27674035-27676436:+|nuORF	REV__ENST00000490170.5_1_1:27674035-27676436:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	407.23370361328125	2	407.232502	812.450451	0.1646	6.703E-05	-0.77323	-0.00031489	-0.60864	-0.00024786	407.2323950006096	44.287	1.4803	41.27	40.979	42.46	-3.0173					97	28	7	0	0	0	0.7224	1	2231	2231		38.806	0	1	1046100	+		49619	26540	41149	41178	53384	53384					0.03672362411748509
RPAGFTKLTK	10	Unmodified	_RPAGFTKLTK_					0	0	0			REV__ENSG00000082438|ENST00000652658|COBLL1	REV__ENSG00000082438|ENST00000652658|COBLL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.8268432617188	2	559.837665	1117.66078	0.26107	0.00014616	4.3788	0.0024514	4.6398	0.0025975	560.3413863692607	48.584	0.20525	45.476	45.348	45.553	-3.1077					5	3	2	0	0	0	0.026577	1	2695	2695		49.536	1.6204	1	23321	+		49620	17086	41150	41179	53385	53385					0.10665400013908766
RPAGKGSITI	10	Unmodified	_RPAGKGSITI_					0	0	0		ENSG00000085719|ENST00000517490|CPNE3	ENSG00000085719|ENST00000517490|CPNE3	ENSG00000085719|ENST00000517490|CPNE3	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.30169677734375	2	500.300916	998.587279	-2.5178	-0.0012597	1.5414	0.00077117	-0.97641	-0.0004885	500.3016116465229	49.594	1.71	46.453	46.043	47.753	-3.1416					106	32	6	0	0	0	0.52439	1	2794	2794		51.193	3.5354	1	775810			49621	1736	41151	41180	53386	53386					0.08792851571456595
RPAGLPEK	8	Unmodified	_RPAGLPEK_					0	0	0		ENSG00000134339|ENST00000256733|SAA2;ENSG00000173432|ENST00000356524|SAA1	ENSG00000134339|ENST00000256733|SAA2	ENSG00000134339|ENST00000256733|SAA2	MULTI-MSMS	OvCa9_classI_Rep2	2	434.25543212890625	2	434.255977	866.497401	-1.6226	-0.00070463	2.276	0.00098837	0.65339	0.00028374	434.25691311912357	37.956	1.2325	35.246	34.781	36.013	-2.7097					43	24	3	0	0	0	0.6962	1	1744	1744		44.117	3.5442	1	109840			49622	4287	41152	41181	53387	53387					0.05881221962897598
RPAGPALLLL	10	Unmodified	_RPAGPALLLL_					0	0	0		ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	MULTI-MSMS	OvCa9_classI_Rep3	3	510.83099365234375	2	510.831852	1019.64915	1.2324	0.00062957	-1.715	-0.00087606	-0.48253	-0.00024649	510.8308797433976	121.36	1.4143	120.34	120.01	121.43	-1.0271					50	26	2	0	0	0	0.66721	1	9293	9293		34.173	5.023	1	296510			49623	7808	41153	41182	53388	53388					0.14011202990604943
RPAIPPPLS	9	Unmodified	_RPAIPPPLS_					0	0	0		ENSG00000160602|ENST00000268766|NEK8;ENST00000543014.1_1_17:27064636-27069002:+|nuORF	ENSG00000160602|ENST00000268766|NEK8	ENSG00000160602|ENST00000268766|NEK8	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.28936767578125	2	474.287277	946.560001	2.9498	0.001399	4.2892	0.0020343	7.239	0.0034334	474.28922077273074	129.53	5.9099	128.07	125.62	131.53	-1.4565					195	118	2	0	0	0	0.6653	1	12557	12557		24.203	0	1	37993			49624	6074	41154	41183	53389	53389					0.08458368031085683
RPAIPSAEL	9	Unmodified	_RPAIPSAEL_					0	0	0			REV__LTR8_dup2971|chr17:8380695-8381392:+|1.1462445818792564|0.2447948664736123|2.23|429.0|4|1|sense	REV__LTR8_dup2971|chr17:8380695-8381392:+|1.1462445818792564|0.2447948664736123|2.23|429.0|4|1|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	477.27496337890625	2	477.274367	952.53418	0.19092	9.1124E-05	-0.47583	-0.0002271	-0.28491	-0.00013598	477.2740802004449	78.148	1.9944	75.796	75.353	77.348	-2.3527					70	39	3	0	0	0	0.34132	1	4141	4141		58.23	1.7961	1	1022000	+		49625	28633	41155	41184	53390	53390					0.056014737887949195
RPAKCLGAR	9	Unmodified	_RPAKCLGAR_					0	0	0			REV__ENST00000471106.5_1_1:113255553-113257673:-|nuORF	REV__ENST00000471106.5_1_1:113255553-113257673:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.2630920410156	2	486.282003	970.549453	-0.64776	-0.00031499	-2.3641	-0.0011496	-3.0118	-0.0014646	486.27919580131373	48.39	0.60008	45.654	45.453	46.053	-2.7362					16	11	2	0	0	0	0.027462	1	2995	2995		14.865	2.658	1	12459	+		49626	26269	41156	41185	53391	53391					0.06300062104992321
RPAKKSHPE	9	Unmodified	_RPAKKSHPE_					0	0	0			REV__RGL2|p.S642Nfs*30|1|0.03|ENSG00000237441|chr6:33293100-33293101|-/TA|frameshift_variant	REV__RGL2|p.S642Nfs*30|1|0.03|ENSG00000237441|chr6:33293100-33293101|-/TA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.2976684570312	2	525.296165	1048.57778	-1.074	-0.00056415	-1.0058	-0.00052833	-2.0797	-0.0010925	525.296559981774	48.331	1.5506	45.223	44.938	46.489	-3.1077					85	29	4	0	0	0	0.37182	2	2659	2659;2672		54.722	6.8792	1	1035600	+		49627	23420	41157	41186	53392;53393	53392					0.05543083285942885
RPAKKSVGD	9	Unmodified	_RPAKKSVGD_					0	0	0			REV__ENSG00000134452|ENST00000362091|FBH1	REV__ENSG00000134452|ENST00000362091|FBH1	MULTI-MSMS	OvCa9_classI_Rep2	2	479.2752685546875	2	479.277441	956.540328	-1.3781	-0.00066051	1.4203	0.0006807	0.042118	2.0186E-05	479.2778548190663	50.558	1.983	47.764	47.232	49.215	-2.794					76	39	3	0	0	0	0.51177	1	3289	3289		41.427	0.85399	1	369850	+		49628	19204	41158	41187	53394	53394					0.060319920203255606
RPALAAGLIR	10	Unmodified	_RPALAAGLIR_					0	0	0			REV__ENST00000382496.9_1_5:9437951-9545766:-|nuORF	REV__ENST00000382496.9_1_5:9437951-9545766:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	519.3328857421875	2	519.33255	1036.65055	0.36573	0.00018993	-1.1243	-0.00058388	-0.75855	-0.00039394	519.332039905815	72.479	2.9684	69.876	69.23	72.198	-2.6023					206	57	5	0	0	0	0.49558	1	3462	3462		54.776	0	1	2143000	+		49629	25215	41159	41188	53395	53395					0.13368837079360674
RPALAPPFIV	10	Unmodified	_RPALAPPFIV_					0	0	0		nc|ENSG00000130529|Q8TD43-2|TRPM4;nc|ENSG00000130529|Q8TD43-3|TRPM4;ENSG00000130529|ENST00000252826|TRPM4	nc|ENSG00000130529|Q8TD43-2|TRPM4	nc|ENSG00000130529|Q8TD43-2|TRPM4	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.8312377929688	2	540.831852	1079.64915	-2.0025	-0.001083	1.179	0.00063766	-0.82347	-0.00044536	540.8325567076699	124.8	3.4681	123.41	123.02	126.49	-1.3908					189	68	4	0	0	0	0.71192	1	11965	11965		29.15	6.1071	1	9581200			49630	3992	41160	41189	53396	53396					0.11251202990592901
RPALFANLF	9	Unmodified	_RPALFANLF_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENST00000570986.1_1_17:4457199-4458649:-|nuORF	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MSMS	OvCa9_classI_Rep2	2	524.7974853515625	2	524.800552	1047.58655	1.1214	0.00058853	-2.565	-0.0013461	-1.4436	-0.00075761	524.7996505398438	129.03	0.98938	128.8	128.48	129.46	-0.22697					68	19	5	0	0	0	0.36502	3	12654	12648;12654;12660		55.504	15.717	1	147420			49631	4133	41161	41190	53397;53398;53399	53398					0.06466056922386088
RPALLALLL	9	Unmodified	_RPALLALLL_					0	0	0			REV__ENST00000238497.9_1_18:61078801-61089566:-|nuORF	REV__ENST00000238497.9_1_18:61078801-61089566:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	490.3365783691406	2	490.33677	978.658987	0.31976	0.00015679	-1.1553	-0.00056648	-0.83553	-0.00040969	490.3362879264998	135.18	3.9777	134.96	134.64	138.62	-0.22697					225	81	5	0	0	0	0.46377	2	13389	13389;13564		45.952	6.6555	1	7114000	+		49632	23816	41162	41191	53400;53401	53400					0.16880390995981998
RPALLALLL	9	Unmodified	_RPALLALLL_					0	0	0			REV__ENST00000238497.9_1_18:61078801-61089566:-|nuORF	REV__ENST00000238497.9_1_18:61078801-61089566:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	490.3363952636719	2	490.33677	978.658987	-1.5535	-0.00076172	0.74111	0.00036339	-0.81236	-0.00039833	490.33716888209767	136.71	4.5569	135.62	135.22	139.77	-1.0858					270	92	5	0	0	0	0.48324	1	11202	11202		44.117	1.6423	1	5555400	+		49633	23816	41162	41191	53402	53402					0.16880390995981998
RPALLHSQF	9	Unmodified	_RPALLHSQF_					0	0	0		nc|ENSG00000144802|Q9BYH8-3|NFKBIZ;nc|ENSG00000144802|Q9BYH8-2|NFKBIZ;ENSG00000144802|ENST00000326172|NFKBIZ;NFKBIZ|p.A369Efs*21|1|0.04|ENSG00000144802|chr3:101853631-101853632|-/AAAGTGAAAATGAGGAAGT|frameshift_variant	nc|ENSG00000144802|Q9BYH8-3|NFKBIZ	nc|ENSG00000144802|Q9BYH8-3|NFKBIZ	MULTI-MSMS	OvCa9_classI_Rep3	3	534.801025390625	2	534.801083	1067.58761	1.4912	0.00079751	-1.5073	-0.00080609	-0.016055	-8.5861E-06	534.800052583582	68.925	1.398	66.111	65.813	67.211	-2.8144					53	27	3	0	0	0	0.1149	5	3036	3021;3024;3036;3041;3055		93.143	33.025	1	614880			49634	5182	41163	41192	53403;53404;53405;53406;53407	53405					0.05652271291319266
RPALLHSQF	9	Unmodified	_RPALLHSQF_					0	0	0		nc|ENSG00000144802|Q9BYH8-3|NFKBIZ;nc|ENSG00000144802|Q9BYH8-2|NFKBIZ;ENSG00000144802|ENST00000326172|NFKBIZ;NFKBIZ|p.A369Efs*21|1|0.04|ENSG00000144802|chr3:101853631-101853632|-/AAAGTGAAAATGAGGAAGT|frameshift_variant	nc|ENSG00000144802|Q9BYH8-3|NFKBIZ	nc|ENSG00000144802|Q9BYH8-3|NFKBIZ	MULTI-MATCH	OvCa9_classI_Rep2	2		2	534.801083	1067.58761	-1.694	-0.00090597	1.4561	0.00077871	-0.23796	-0.00012726	534.8016368224543	68.835	1.2944	66.215	65.918	67.213	-2.6203	0.051793	0.0018503	NaN	93.143	62	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	343750			49635	5182	41163	41192							0.05652271291319266
RPALLLLML	9	Unmodified	_RPALLLLML_					0	0	0		nc|ENSG00000010704|Q30201-11|HFE;nc|ENSG00000010704|Q30201-9|HFE;nc|ENSG00000010704|Q30201-6|HFE;ENST00000486147.1_1_6:26087668-26093021:+|nuORF;ENST00000483782.1_1_6:26087668-26091517:+|nuORF;nc|ENSG00000010704|Q30201-10|HFE;nc|ENSG00000010704|Q30201-4|HFE;nc|ENSG00000010704|Q30201-7|HFE;nc|ENSG00000010704|Q30201-2|HFE;nc|ENSG00000010704|Q30201-8|HFE;nc|ENSG00000010704|Q30201-5|HFE;nc|ENSG00000010704|Q30201-3|HFE;ENSG00000010704|ENST00000357618|HFE	nc|ENSG00000010704|Q30201-11|HFE	nc|ENSG00000010704|Q30201-11|HFE	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.843505859375	2	520.338455	1038.66236	-0.78006	-0.0004059	4.4273	0.0023037	3.6472	0.0018978	520.3404101251207	39.944	1.9528	36.99	36.616	38.569	-2.9541					93	37	5	0	0	0	0.65476	1	1665	1665		25.45	2.4077	1	1048100			49636	948	41164	41193	53408	53408					0.14457317778351353
RPALPALLV	9	Unmodified	_RPALPALLV_					0	0	0		ENSG00000090339|ENST00000264832|ICAM1	ENSG00000090339|ENST00000264832|ICAM1	ENSG00000090339|ENST00000264832|ICAM1	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.2995910644531	2	475.313295	948.612037	0.82559	0.00039241	2.7073	0.0012868	3.5329	0.0016792	475.31463878009276	65.391	0.502	62.695	62.52	63.022	-2.6958					12	9	2	0	0	0	0.027462	1	5062	5062		19.36	0	1	13722			49637	1835	41165	41194	53409	53409					0.13567531444834913
RPALPEIKPA	10	Unmodified	_RPALPEIKPA_					0	0	0		HNRNPL-SRRT|2|fusion;HNRNPL-SRRT|1|fusion;ENST00000478693.1_1_7:100484981-100485835:+|nuORF;nc|ENSG00000087087|Q9BXP5-5|SRRT;nc|ENSG00000087087|Q9BXP5-4|SRRT;nc|ENSG00000087087|Q9BXP5-2|SRRT;nc|ENSG00000087087|Q9BXP5-3|SRRT;ENSG00000087087|ENST00000611405|SRRT	HNRNPL-SRRT|2|fusion;nc|ENSG00000087087|Q9BXP5-5|SRRT	HNRNPL-SRRT|2|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	546.3328857421875	2	546.332216	1090.64988	-2.6411	-0.0014429	-0.058936	-3.2199E-05	-2.7001	-0.0014751	546.3320576477423	36.639	1.8723	33.93	33.647	35.519	-2.7097					83	37	3	0	0	0	0.55359	1	1614	1614		47.657	11.211	1	180730			49638	14487;1762	41166	41195	53410	53410					0.10817997639628629
RPALPLILGL	10	Unmodified	_RPALPLILGL_					0	0	0		ENSG00000033100|ENST00000035307|CHPF2;nc|ENSG00000033100|Q9P2E5-2|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	MULTI-SECPEP	OvCa9_classI_Rep2	2	531.8163452148438	2	531.855327	1061.6961	-1.8484	-0.00098309	1.6439	0.00087432	-0.20452	-0.00010878	531.8560157350261	139.13	0.93562	138.9	138.62	139.55	-0.22697					35	18	3	0	0	0	0.026752	1	13898	13898		44.117	21.074	1	33445			49639	1074	41167	41196	53411	53411					0.16772062541758714
RPALPLILGL	10	Unmodified	_RPALPLILGL_					0	0	0		ENSG00000033100|ENST00000035307|CHPF2;nc|ENSG00000033100|Q9P2E5-2|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	MULTI-SECPEP	OvCa9_classI_Rep3	3	531.8170166015625	2	531.855327	1061.6961	-1.7631	-0.00093772	1.3241	0.00070421	-0.43905	-0.00023351	531.8559485015343	140.38	0.93434	139.35	138.99	139.92	-1.0339					38	18	3	0	0	0	0.026665	1	11555	11555		51.335	5.3835	1	35442			49640	1074	41167	41196	53412	53412					0.16772062541758714
RPALPLILGL	10	Unmodified	_RPALPLILGL_					0	0	0		ENSG00000033100|ENST00000035307|CHPF2;nc|ENSG00000033100|Q9P2E5-2|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	ENSG00000033100|ENST00000035307|CHPF2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.817626953125	2	531.855327	1061.6961	-0.17756	-9.4435E-05	-0.47882	-0.00025466	-0.65637	-0.0003491	531.854930970538	140.79	0.98647	139.3	138.96	139.94	-1.4946					42	18	3	0	0	0	0.026752	1	13729	13729		44.117	1.7207	1	49969			49641	1074	41167	41196	53413	53413					0.16772062541758714
RPALPVSYL	9	Unmodified	_RPALPVSYL_					0	0	0		ENSG00000167615|ENST00000326764|LENG8	ENSG00000167615|ENST00000326764|LENG8	ENSG00000167615|ENST00000326764|LENG8	MULTI-MSMS	OvCa9_classI_Rep2	2	508.300537109375	2	508.300384	1014.58622	-1.2171	-0.00061866	-0.76599	-0.00038935	-1.9831	-0.001008	508.3002749492039	102.53	1.7278	101.85	101.34	103.07	-0.68459					78	34	3	0	0	0	0.18193	2	9439	9432;9439		79.451	24.686	1	316480			49642	6815	41168	41197	53414;53415	53415					0.07950637202554844
RPALPVSYL	9	Unmodified	_RPALPVSYL_					0	0	0		ENSG00000167615|ENST00000326764|LENG8	ENSG00000167615|ENST00000326764|LENG8	ENSG00000167615|ENST00000326764|LENG8	MULTI-MATCH	OvCa9_classI_Rep3	3		2	508.300384	1014.58622	-0.2828	-0.00014375	-0.76607	-0.00038939	-1.0489	-0.00053314	508.29997833536595	103.43	1.4164	102	101.45	102.86	-1.4347	0.072821	-1.579E-08	NaN	79.451	52	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	435590			49643	6815	41168	41197							0.07950637202554844
RPALTLLLL	9	Unmodified	_RPALTLLLL_					0	0	0		PLA2G12A|p.C168Lfs*2|1|0.1|ENSG00000123739|chr4:109714446-109714447|-/G|frameshift_variant;ENSG00000123739|ENST00000243501|PLA2G12A	PLA2G12A|p.C168Lfs*2|1|0.1|ENSG00000123739|chr4:109714446-109714447|-/G|frameshift_variant	PLA2G12A|p.C168Lfs*2|1|0.1|ENSG00000123739|chr4:109714446-109714447|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	505.341796875	2	505.342052	1008.66955	-0.1959	-9.8999E-05	-1.673	-0.00084545	-1.8689	-0.00094444	505.3408478582907	133.56	2.7048	133.33	132.13	134.83	-0.22697					158	54	5	0	0	0	0.19758	3	13233	13221;13233;13257		76.774	7.2795	1	1592700			49644	3613	41169	41198	53416;53417;53418	53417					0.16556373650416845
RPALVLVWE	9	Unmodified	_RPALVLVWE_					0	0	0		ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	ENSG00000166189|ENST00000299238|HPS6	MULTI-MSMS	OvCa9_classI_Rep3	3	541.8193359375	2	541.821484	1081.62842	0.49266	0.00026694	-4.4188	-0.0023942	-3.9261	-0.0021273	541.8190905602746	72.496	2.1818	69.894	69.571	71.753	-2.6023					94	43	3	0	0	0	0.38529	1	3464	3464		53.351	5.6941	1	1635600			49645	6650	41170	41199	53419	53419					0.09086612610917655
RPAMDIPPIH	10	Unmodified	_RPAMDIPPIH_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	OvCa9_classI_Rep4_	4	573.8092651367188	2	573.808051	1145.60155	0.5025	0.00028834	2.6052	0.0014949	3.1077	0.0017832	573.8094810404443	35.265	1.099	32.416	32.19	33.288	-2.849					55	21	4	0	0	0	0.42962	2	1113	1113;1124		64.207	7.4862	1	251670			49646	3261	41171	41200	53420;53421	53420					0.034571807281054134
RPAMDIPPIH	10	Unmodified	_RPAMDIPPIH_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MATCH	OvCa99_classI_Rep5	1		2	573.808051	1145.60155	-0.10023	-5.7515E-05	-4.1341	-0.0023722	-4.2344	-0.0024297	573.80578223347	32.36	0.24907	32.36	32.204	32.453	0	-0.027874	-0.0069026	NaN	64.207	8	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49992			49647	3261	41171	41200							0.034571807281054134
RPANHRQLTF	10	Unmodified	_RPANHRQLTF_					0	0	0		PSMD13|p.L315Pfs*59|1|0.26|ENSG00000185627|chr11:251842-251843|-/T|frameshift_variant;ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13;ENST00000527982.1_1_11:251545-251650:+|nuORF	PSMD13|p.L315Pfs*59|1|0.26|ENSG00000185627|chr11:251842-251843|-/T|frameshift_variant	PSMD13|p.L315Pfs*59|1|0.26|ENSG00000185627|chr11:251842-251843|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	413.8952941894531	3	413.895022	1238.66324	0.28047	0.00011608	-0.45001	-0.00018626	-0.16955	-7.0175E-05	413.8948381864161	46.694	3.2733	43.984	43.547	46.82	-2.7097					153	65	4	0	0	0	0.24997	12	2787	2782;2787;2793;2799;2805;2811;2817;2830;2835;2843;2850;2863		86.882	51.73	1	1035800			49648	8270	41172	41201	53422;53423;53424;53425;53426;53427;53428;53429;53430;53431;53432;53433	53423					0.053452484715762694
RPANHRQLTF	10	Unmodified	_RPANHRQLTF_					0	0	0		PSMD13|p.L315Pfs*59|1|0.26|ENSG00000185627|chr11:251842-251843|-/T|frameshift_variant;ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13;ENST00000527982.1_1_11:251545-251650:+|nuORF	PSMD13|p.L315Pfs*59|1|0.26|ENSG00000185627|chr11:251842-251843|-/T|frameshift_variant	PSMD13|p.L315Pfs*59|1|0.26|ENSG00000185627|chr11:251842-251843|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	620.33984375	2	620.338895	1238.66324	-1.0739	-0.00066617	0.89947	0.00055798	-0.17441	-0.00010819	620.3394091242254	46.735	2.133	44.025	43.596	45.729	-2.7097					112	42	4	0	0	0	0.39872	4	2796	2796;2807;2821;2827		56.434	27.67	1	367300			49649	8270	41172	41201	53434;53435;53436;53437	53434					0.053452484715762694
RPANHRQLTF	10	Unmodified	_RPANHRQLTF_					0	0	0		PSMD13|p.L315Pfs*59|1|0.26|ENSG00000185627|chr11:251842-251843|-/T|frameshift_variant;ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13;ENST00000527982.1_1_11:251545-251650:+|nuORF	PSMD13|p.L315Pfs*59|1|0.26|ENSG00000185627|chr11:251842-251843|-/T|frameshift_variant	PSMD13|p.L315Pfs*59|1|0.26|ENSG00000185627|chr11:251842-251843|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	413.8957824707031	3	413.895022	1238.66324	0.2308	9.5529E-05	-0.4671	-0.00019333	-0.2363	-9.7801E-05	413.894810272949	47.136	2.6131	44.063	43.604	46.217	-3.0724					130	50	4	0	0	0	0.42298	2	2529	2516;2529		65.157	31.071	1	1170100			49650	8270	41172	41201	53438;53439	53439					0.053452484715762694
RPANHRQLTF	10	Unmodified	_RPANHRQLTF_					0	0	0		PSMD13|p.L315Pfs*59|1|0.26|ENSG00000185627|chr11:251842-251843|-/T|frameshift_variant;ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13;ENST00000527982.1_1_11:251545-251650:+|nuORF	PSMD13|p.L315Pfs*59|1|0.26|ENSG00000185627|chr11:251842-251843|-/T|frameshift_variant	PSMD13|p.L315Pfs*59|1|0.26|ENSG00000185627|chr11:251842-251843|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	620.3408203125	2	620.338895	1238.66324	-0.14376	-8.9178E-05	0.017341	1.0758E-05	-0.12642	-7.842E-05	620.3388746505595	47.122	1.4177	44.049	43.707	45.125	-3.0724					88	27	4	0	0	0	0.46863	1	2519	2519		54.722	20.636	1	516820			49651	8270	41172	41201	53440	53440					0.053452484715762694
RPANPPGVL	9	Unmodified	_RPANPPGVL_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MULTI-MSMS	OvCa9_classI_Rep4_	4	460.7699890136719	2	460.769252	919.52395	-0.13941	-6.4235E-05	-0.5082	-0.00023416	-0.64761	-0.0002984	460.7691552657121	64.685	1.4048	61.2	60.872	62.276	-3.4854					79	28	5	0	0	0	0.29717	1	4628	4628		63.306	5.8536	1	456110			49652	15021	41173	41202	53441	53441					0.06096910854239468
RPANPPGVL	9	Unmodified	_RPANPPGVL_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MULTI-MATCH	OvCa9_classI_Rep2	2		2	460.769252	919.52395	-0.68081	-0.0003137	2.7533	0.0012686	2.0725	0.00095493	460.76954972266196	64.035	1.3688	61.31	60.759	62.128	-2.7245	0.055025	0.0022166	NaN	63.306	53	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85029			49653	15021	41173	41202							0.06096910854239468
RPANSLQPVD	10	Unmodified	_RPANSLQPVD_					0	0	0		ENST00000415035.1_1_2:191835285-191835405:-|nuORF	ENST00000415035.1_1_2:191835285-191835405:-|nuORF	ENST00000415035.1_1_2:191835285-191835405:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	548.7876586914062	2	548.790912	1095.56727	-2.3288	-0.001278	-2.7558	-0.0015124	-5.0847	-0.0027904	548.7895560724284	36.084	1.3822	33.375	33.152	34.534	-2.7097					51	27	2	0	0	0	0.73063	1	1516	1516		27.047	1.4733	1	294320			49654	11586	41174	41203	53442	53442					0.023310558408638826
RPAPAAPLL	9	Unmodified	_RPAPAAPLL_					0	0	0		nc|ENSG00000161642|Q96PM9-3|ZNF385A;nc|ENSG00000161642|Q96PM9|ZNF385A;nc|ENSG00000161642|Q96PM9-2|ZNF385A;ENST00000552382.5_1_12:54764042-54772879:-|nuORF;ENSG00000161642|ENST00000394313|ZNF385A	nc|ENSG00000161642|Q96PM9-3|ZNF385A	nc|ENSG00000161642|Q96PM9-3|ZNF385A	MULTI-MSMS	OvCa9_classI_Rep4_	4	453.2829895019531	2	453.281995	904.549437	-0.15158	-6.8709E-05	0.057288	2.5967E-05	-0.094294	-4.2742E-05	453.2818322513689	80.841	1.5079	78.13	77.81	79.318	-2.7106					68	30	4	0	0	0	0.32337	2	6620	6610;6620		60.294	7.9948	1	599040			49655	15130	41175	41204	53443;53444	53444					0.0933438537664415
RPAPAAPLL	9	Unmodified	_RPAPAAPLL_					0	0	0		nc|ENSG00000161642|Q96PM9-3|ZNF385A;nc|ENSG00000161642|Q96PM9|ZNF385A;nc|ENSG00000161642|Q96PM9-2|ZNF385A;ENST00000552382.5_1_12:54764042-54772879:-|nuORF;ENSG00000161642|ENST00000394313|ZNF385A	nc|ENSG00000161642|Q96PM9-3|ZNF385A	nc|ENSG00000161642|Q96PM9-3|ZNF385A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	453.281995	904.549437	2.1175	0.00095981	-2.2401	-0.0010154	-0.12265	-5.5596E-05	453.2808125832785	79.998	1.6065	78.302	77.662	79.269	-1.6951	0.086011	-0.00091982	NaN	60.294	83	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	273800			49656	15130	41175	41204							0.0933438537664415
RPAPAGRVTPP	11	Unmodified	_RPAPAGRVTPP_					0	0	0			REV__ENST00000307714.12_1_1:32479575-32503673:+|nuORF	REV__ENST00000307714.12_1_1:32479575-32503673:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	559.8240966796875	2	559.825089	1117.63563	-0.22671	-0.00012692	-0.48007	-0.00026875	-0.70677	-0.00039567	559.8248187280101	48.115	1.5889	45.405	44.935	46.524	-2.7097					74	31	4	0	0	0	0.36705	1	2973	2973		63.534	1.4264	1	475870	+		49657	18556	41176	41205	53445	53445					0.08151345211376793
RPAPAGRVTPP	11	Unmodified	_RPAPAGRVTPP_					0	0	0			REV__ENST00000307714.12_1_1:32479575-32503673:+|nuORF	REV__ENST00000307714.12_1_1:32479575-32503673:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.8268432617188	2	559.825089	1117.63563	0.24704	0.0001383	-1.0654	-0.00059641	-0.81832	-0.00045812	559.8245195702754	48.533	1.7084	45.425	44.988	46.697	-3.1077					91	32	5	0	0	0	0.080408	1	2695	2695		101.25	2.6232	1	2308500	+		49658	18556	41176	41205	53446	53446					0.08151345211376793
RPAPFRALV	9	Unmodified	_RPAPFRALV_					0	0	0		nc|ENSG00000119408|Q9HC98-3|NEK6	nc|ENSG00000119408|Q9HC98-3|NEK6	nc|ENSG00000119408|Q9HC98-3|NEK6	MULTI-MSMS	OvCa9_classI_Rep2	2	513.8153686523438	2	513.813993	1025.61343	-0.4504	-0.00023142	2.667	0.0013703	2.2166	0.0011389	513.8152848157494	74.741	2.4404	72.77	72.324	74.764	-1.9711					110	46	3	0	0	0	0.53957	1	6179	6179		38.806	9.6566	1	2623500			49659	14983	41179	41206	53447	53447					0.1016516553358997
RPAPGRPGL	9	Unmodified	_RPAPGRPGL_					0	0	0			REV__ENST00000431515.6_2_16:3029815-3030326:-|nuORF	REV__ENST00000431515.6_2_16:3029815-3030326:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	460.77532958984375	2	460.774868	919.535184	-1.1981	-0.00055207	1.279	0.00058935	0.0809	3.7277E-05	460.77529207790866	38.685	0.93974	35.975	35.766	36.706	-2.7097					36	18	3	0	0	0	0.22961	1	1836	1836		71.296	7.9894	1	91166	+		49660	25722	41180	41207	53448	53448					0.0721973294835152
RPAPLSAEL	9	Unmodified	_RPAPLSAEL_					0	0	0		ENST00000561895.1_1_16:88718935-88721317:-|nuORF;ENST00000562981.1_1_16:88718935-88719839:-|nuORF;ENST00000565149.5_1_16:88718935-88722722:-|nuORF;ENSG00000167508|ENST00000301012|MVD	ENST00000561895.1_1_16:88718935-88721317:-|nuORF	ENST00000561895.1_1_16:88718935-88721317:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	477.2731628417969	2	477.274367	952.53418	-0.36419	-0.00017382	0.23031	0.00010992	-0.13387	-6.3894E-05	477.2743448810079	78.003	2.2056	76.214	75.571	77.776	-1.7894					80	42	3	0	0	0	0.3076	1	6481	6481		62.107	0	1	403730			49661	13762	41181	41208	53449	53449					0.056014737887949195
RPAPLSAEL	9	Unmodified	_RPAPLSAEL_					0	0	0		ENST00000561895.1_1_16:88718935-88721317:-|nuORF;ENST00000562981.1_1_16:88718935-88719839:-|nuORF;ENST00000565149.5_1_16:88718935-88722722:-|nuORF;ENSG00000167508|ENST00000301012|MVD	ENST00000561895.1_1_16:88718935-88721317:-|nuORF	ENST00000561895.1_1_16:88718935-88721317:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	477.27490234375	2	477.274367	952.53418	0.19092	9.1124E-05	-0.47583	-0.0002271	-0.28491	-0.00013598	477.2740802004449	78.148	1.9944	75.796	75.353	77.348	-2.3527					70	39	3	0	0	0	0.2422	3	4131	4123;4131;4136		69.628	0	1	1022000			49662	13762	41181	41208	53450;53451;53452	53451					0.056014737887949195
RPAPLSAEL	9	Unmodified	_RPAPLSAEL_					0	0	0		ENST00000561895.1_1_16:88718935-88721317:-|nuORF;ENST00000562981.1_1_16:88718935-88719839:-|nuORF;ENST00000565149.5_1_16:88718935-88722722:-|nuORF;ENSG00000167508|ENST00000301012|MVD	ENST00000561895.1_1_16:88718935-88721317:-|nuORF	ENST00000561895.1_1_16:88718935-88721317:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.2755126953125	2	477.274367	952.53418	0.19939	9.5164E-05	-0.91745	-0.00043788	-0.71806	-0.00034271	477.2738419569008	78.957	1.6221	76.205	75.853	77.475	-2.7514					68	33	3	0	0	0	0.22621	2	6382	6382;6392		71.877	0	1	1058800			49663	13762	41181	41208	53453;53454	53453					0.056014737887949195
RPAPPAAVL	9	Unmodified	_RPAPPAAVL_					0	0	0		nc|ENSG00000120256|Q86VZ4-2|LRP11;ENSG00000120256|ENST00000239367|LRP11	nc|ENSG00000120256|Q86VZ4-2|LRP11	nc|ENSG00000120256|Q86VZ4-2|LRP11	MULTI-MSMS	OvCa9_classI_Rep4_	4	446.27545166015625	2	446.27417	890.533787	-0.97478	-0.00043502	0.85663	0.00038229	-0.11815	-5.2729E-05	446.2744414722382	72.963	1.6769	69.567	69.253	70.93	-3.3961					57	34	2	0	0	0	0.52083	1	5645	5645		40.573	4.9543	1	564710			49664	3423	41182	41209	53455	53455					0.08414098859600472
RPAPPAQSL	9	Unmodified	_RPAPPAQSL_					0	0	0		nc|ENSG00000072134|O95208-3|EPN2;nc|ENSG00000072134|O95208-2|EPN2;ENSG00000072134|ENST00000314728|EPN2;nc|ENSG00000072134|O95208-5|EPN2	nc|ENSG00000072134|O95208-3|EPN2	nc|ENSG00000072134|O95208-3|EPN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	468.7672424316406	2	468.766709	935.518865	-0.43313	-0.00020304	0.094081	4.4102E-05	-0.33905	-0.00015893	468.7666044779166	55.53	1.468	52.236	51.957	53.425	-3.2944					68	28	4	0	0	0	0.21231	2	3515	3515;3527		74.255	17.534	1	615630			49665	1466	41183	41210	53456;53457	53456					0.048526069916078995
RPAPPAQSL	9	Unmodified	_RPAPPAQSL_					0	0	0		nc|ENSG00000072134|O95208-3|EPN2;nc|ENSG00000072134|O95208-2|EPN2;ENSG00000072134|ENST00000314728|EPN2;nc|ENSG00000072134|O95208-5|EPN2	nc|ENSG00000072134|O95208-3|EPN2	nc|ENSG00000072134|O95208-3|EPN2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	468.766709	935.518865	-1.0947	-0.00051317	1.188	0.00055687	0.093239	4.3707E-05	468.7670688191253	55.267	1.093	52.453	52.122	53.215	-2.8139	0.10854	0.00057245	NaN	74.255	46	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139310			49666	1466	41183	41210							0.048526069916078995
RPAPPTVEQI	10	Unmodified	_RPAPPTVEQI_					0	0	0		nc|nan|Q9UFG5-2|C19orf25;ENSG00000119559|ENST00000585675|C19orf25;ENST00000592605.1_1_19:1478547-1479204:-|nuORF;ENST00000589421.1_1_19:1478470-1478902:-|nuORF	nc|nan|Q9UFG5-2|C19orf25	nc|nan|Q9UFG5-2|C19orf25	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.3136596679688	2	554.31148	1106.60841	0.24423	0.00013538	-0.95827	-0.00053118	-0.71404	-0.0003958	554.3108683464627	64.023	1.6442	60.548	60.061	61.705	-3.475					79	33	4	0	0	0	0.57535	1	4535	4535		45.022	9.4039	1	650240			49667	15420	41184	41211	53458	53458					0.05936816880330298
RPAPSARLPPG	11	Unmodified	_RPAPSARLPPG_					0	0	0		ENST00000462149.1_1_1:107684008-107690770:+|nuORF	ENST00000462149.1_1_1:107684008-107690770:+|nuORF	ENST00000462149.1_1_1:107684008-107690770:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	559.8252563476562	2	559.825089	1117.63563	-0.22671	-0.00012692	-0.48007	-0.00026875	-0.70677	-0.00039567	559.8248187280101	48.115	1.5889	45.405	44.935	46.524	-2.7097					74	31	4	0	0	0	0.31264	1	2956	2956		67.494	7.3754	1	475870			49668	12195	41185	41212	53459	53459					0.08151345211354055
RPAPSVQLVL	10	Unmodified	_RPAPSVQLVL_					0	0	0			REV__ENST00000466248.1_1_X:9984481-9984610:+|nuORF	REV__ENST00000466248.1_1_X:9984481-9984610:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3338623046875	2	540.332216	1078.64988	0.71528	0.00038649	2.8501	0.00154	3.5654	0.0019265	540.3335173912039	131.44	2.5576	130.32	129.91	132.47	-1.1249					119	51	4	0	0	0	0.52439	1	10497	10497		51.193	3.2771	1	239410	+		49669	26184	41186	41213	53460	53460					0.11369997639667417
RPAPTKGLD	9	Unmodified	_RPAPTKGLD_					0	0	0			REV__ENST00000409786.1_1_2:171570143-171571073:-|nuORF	REV__ENST00000409786.1_1_2:171570143-171571073:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.7736511230469	2	477.771991	953.529429	-0.44147	-0.00021092	-0.51589	-0.00024648	-0.95736	-0.0004574	477.77173142761416	73.753	1.9165	70.357	70.027	71.944	-3.3961					89	39	3	0	0	0	0.53483	1	5776	5776		39.253	3.6345	1	2539800	+		49670	25479	41187	41214	53461	53461					0.05080589646047429
RPAPTRGSF	9	Unmodified	_RPAPTRGSF_					0	0	0		ENST00000407472.5_1_22:19838375-19838693:-|nuORF	ENST00000407472.5_1_22:19838375-19838693:-|nuORF	ENST00000407472.5_1_22:19838375-19838693:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	494.7711486816406	2	494.769783	987.525013	-0.08464	-4.1877E-05	3.0552	0.0015116	2.9705	0.0014697	494.7712200754581	31.649	1.8662	31.649	30.93	32.796	0					65	37	2	0	0	0	0.51865	1	1284	1284		40.778	1.972	1	206330			49671	11495	41188	41215	53462	53462					0.030751252231425497
RPAQLHIGF	9	Unmodified	_RPAQLHIGF_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MSMS	OvCa9_classI_Rep2	2	519.7954711914062	2	519.795801	1037.57705	0.55988	0.00029102	-1.7559	-0.00091269	-1.196	-0.00062167	519.7949404540711	79.481	2.7164	77.742	76.807	79.523	-1.7398					131	53	4	0	0	0	0.11171	14	6663	6659;6663;6669;6675;6681;6687;6693;6700;6708;6714;6720;6725;6733;6745		94.006	56.847	1	3817300			49672	4032	41189	41216	53463;53464;53465;53466;53467;53468;53469;53470;53471;53472;53473;53474;53475;53476	53464					0.05976288636884419
RPAQLHIGF	9	Unmodified	_RPAQLHIGF_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MSMS	OvCa9_classI_Rep3	3	519.797119140625	2	519.795801	1037.57705	0.42373	0.00022025	-1.4801	-0.00076937	-1.0564	-0.00054912	519.795018103873	79.928	2.5868	77.588	77.206	79.793	-2.3399					137	50	5	0	0	0	0.079296	15	4337	4333;4337;4343;4350;4356;4362;4368;4374;4380;4386;4393;4400;4407;4412;4419		102.77	56.821	1	5101200			49673	4032	41189	41216	53477;53478;53479;53480;53481;53482;53483;53484;53485;53486;53487;53488;53489;53490;53491	53478					0.05976288636884419
RPAQLHIGF	9	Unmodified	_RPAQLHIGF_					0	0	0		nc|ENSG00000130985|P22314-2|UBA1;ENSG00000130985|ENST00000335972|UBA1	nc|ENSG00000130985|P22314-2|UBA1	nc|ENSG00000130985|P22314-2|UBA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.7970581054688	2	519.795801	1037.57705	-1.063	-0.00055253	0.086907	4.5174E-05	-0.97606	-0.00050735	519.7959208255018	80.444	2.0492	77.733	77.269	79.318	-2.7106					127	41	6	0	0	0	0.16524	6	6571	6559;6571;6583;6595;6607;6619		82.305	45.146	1	4928100			49674	4032	41189	41216	53492;53493;53494;53495;53496;53497	53493					0.05976288636884419
RPAQYIGPH	9	Unmodified	_RPAQYIGPH_					0	0	0		tr|A0A7D7A3W5|A0A7D7A3W5_9CLOTGlucose-1-phosphateadenylyltransferaseOS=ClostridiumintestinaleOX=36845GN=glgCPE=3SV=1	tr|A0A7D7A3W5|A0A7D7A3W5_9CLOTGlucose-1-phosphateadenylyltransferaseOS=ClostridiumintestinaleOX=36845GN=glgCPE=3SV=1	tr|A0A7D7A3W5|A0A7D7A3W5_9CLOTGlucose-1-phosphateadenylyltransferaseOS=ClostridiumintestinaleOX=36845GN=glgCPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3399047851562	2	519.777608	1037.54066	-1.3863	-0.00072056	1.4108	0.00073329	0.024492	1.273E-05	519.777072534898	43.287	0.82821	40.28	40.063	40.891	-3.0074					23	15	2	0	0	0	0.027456	1	2109	2109		57.811	17.239	1	49370			49675	36131	41190	41217	53498	53498					0.023394117401721815
RPARAHSP	8	Unmodified	_RPARAHSP_					0	0	0		ENST00000419783.1_2_3:49395567-49395990:-|nuORF	ENST00000419783.1_2_3:49395567-49395990:-|nuORF	ENST00000419783.1_2_3:49395567-49395990:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	446.22637939453125	2	446.249018	890.483482	2.5552	0.0011403	2.925	0.0013053	5.4803	0.0024456	446.25020623777084	79.556	0.94674	79.556	79.202	80.148	0					46	23	2	0	0	0	0.028476	1	8165	8165		12.207	0	1	790350			49676	11656	41191	41218	53499	53499					0.03385989254456945
RPARGPRGAH	10	Unmodified	_RPARGPRGAH_					0	0	0		ENST00000540753.5_1_9:125133477-125134045:+|nuORF	ENST00000540753.5_1_9:125133477-125134045:+|nuORF	ENST00000540753.5_1_9:125133477-125134045:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	537.8057250976562	2	537.805023	1073.59549	-0.94156	-0.00050637	2.6677	0.0014347	1.7261	0.00092832	537.8064194762118	69.853	1.4073	67.282	66.915	68.322	-2.5707					86	27	5	0	0	0	0.53885	2	5599	5592;5599		49.442	6.9671	1	1089100			49677	13456	41192	41219	53500;53501	53501					0.061638433314556096
RPARPARSP	9	Unmodified	_RPARPARSP_					0	0	0			REV__ENSG00000005884|ENST00000320031|ITGA3	REV__ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	OvCa9_classI_Rep2	2	504.29608154296875	2	504.296499	1006.57845	-0.51106	-0.00025773	0.13731	6.9246E-05	-0.37375	-0.00018848	504.2965168618611	31.671	1.532	28.961	28.69	30.222	-2.7097					81	30	4	0	0	0	0.5811	1	1030	1030		34.173	1.3601	1	812760	+		49678	16405	41193	41220	53502	53502					0.0754192272564751
RPARPGTRLSW	11	Unmodified	_RPARPGTRLSW_					0	0	0		ENST00000486966.1_1_2:101999472-102003919:-|nuORF;ENSG00000175874|ENST00000324768|CREG2	ENST00000486966.1_1_2:101999472-102003919:-|nuORF	ENST00000486966.1_1_2:101999472-102003919:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	432.9146728515625	3	432.914305	1295.72109	-1.1041	-0.00047799	3.1241	0.0013525	2.02	0.0008745	432.9158567399814	54.785	2.7829	51.971	51.473	54.256	-2.8139					169	55	5	0	0	0	0.66539	1	3789	3789		38.714	9.1633	1	2816800			49679	7567	41194	41221	53503	53503					0.08505510397026228
RPARPPDIHTL	11	Unmodified	_RPARPPDIHTL_					0	0	0		ENST00000484302.3_1_17:46673508-46675147:-|nuORF	ENST00000484302.3_1_17:46673508-46675147:-|nuORF	ENST00000484302.3_1_17:46673508-46675147:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	424.91082763671875	3	424.910561	1271.70985	1.7676	0.00075109	-1.9367	-0.00082293	-0.16909	-7.1846E-05	424.90976624626023	65.471	1.3717	62.526	62.148	63.519	-2.9459					98	26	5	0	0	0	0.69735	1	2707	2707		30.569	3.5215	1	905110			49680	12597	41195	41222	53504	53504					0.08486688302878065
RPARTARPV	9	Unmodified	_RPARTARPV_					0	0	0			REV__chr21:45479964-45480122|180|24.11|0.21|6.88|+|1|COL18A1,None|2	REV__chr21:45479964-45480122|180|24.11|0.21|6.88|+|1|COL18A1,None|2	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.3118286132812	2	512.312149	1022.60975	0.7933	0.00040642	-0.96823	-0.00049603	-0.17493	-8.962E-05	512.3115033647524	35.959	0.94899	33.11	32.79	33.739	-2.849					50	18	4	0	0	0	0.46356	1	1196	1196		45.972	6.7194	1	358410	+		49681	16032	41196	41223	53505	53505					0.09934495759739548
RPASHFTFR	9	Unmodified	_RPASHFTFR_					0	0	0		chr12:6492972-6493588|322|25.58|0.39|6.04|-|0|TE_info:MIRb,MIRb_dup155050,MIR,SINE,donor,-,6493588,6493702|MRPL51,None|2	chr12:6492972-6493588|322|25.58|0.39|6.04|-|0|TE_info:MIRb,MIRb_dup155050,MIR,SINE,donor,-,6493588,6493702|MRPL51,None|2	chr12:6492972-6493588|322|25.58|0.39|6.04|-|0|TE_info:MIRb,MIRb_dup155050,MIR,SINE,donor,-,6493588,6493702|MRPL51,None|2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.8268432617188	2	559.796332	1117.57811	0.88824	0.00049723	0.2139	0.00011974	1.1021	0.00061697	560.2981989893235	48.173	0.76633	45.066	44.838	45.604	-3.1077					31	14	4	0	0	0	0.027343	1	2695	2695		68.787	0	1	44641			49682	327	41197	41224	53506	53506					0.024025030058055563
RPASLLLLL	9	Unmodified	_RPASLLLLL_					0	0	0		nc|ENSG00000291104|Q96KV6|BTN2A3P;ENST00000465856.5_1_6:26422331-26423690:+|nuORF;BTN2A1-SPINT2|1|fusion;nc|ENSG00000112763|Q7KYR7-6|BTN2A1;nc|ENSG00000112763|Q7KYR7-4|BTN2A1;ENSG00000112763|ENST00000312541|BTN2A1;nc|ENSG00000112763|Q7KYR7-1|BTN2A1	nc|ENSG00000291104|Q96KV6|BTN2A3P	nc|ENSG00000291104|Q96KV6|BTN2A3P	MULTI-MSMS	OvCa9_classI_Rep2	2	498.33343505859375	2	498.334227	994.653902	-0.31291	-0.00015594	0.085793	4.2754E-05	-0.22712	-0.00011318	498.334174042398	135.29	1.7167	135.06	134.69	136.4	-0.22696					83	34	4	0	0	0	0.18193	1	13403	13403		79.451	2.6044	1	281670			49683	15400	41198	41225	53507	53507					0.15636087133384535
RPASLLLLL	9	Unmodified	_RPASLLLLL_					0	0	0		nc|ENSG00000291104|Q96KV6|BTN2A3P;ENST00000465856.5_1_6:26422331-26423690:+|nuORF;BTN2A1-SPINT2|1|fusion;nc|ENSG00000112763|Q7KYR7-6|BTN2A1;nc|ENSG00000112763|Q7KYR7-4|BTN2A1;ENSG00000112763|ENST00000312541|BTN2A1;nc|ENSG00000112763|Q7KYR7-1|BTN2A1	nc|ENSG00000291104|Q96KV6|BTN2A3P	nc|ENSG00000291104|Q96KV6|BTN2A3P	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3348693847656	2	498.334227	994.653902	1.2058	0.00060088	-1.8531	-0.00092347	-0.64734	-0.00032259	498.3333151769235	123.76	0.97957	122.73	122.31	123.29	-1.0377					75	18	5	0	0	0	0.33652	1	9580	9580		58.782	7.4465	1	3991100			49684	15400	41198	41225	53508	53508					0.15636087133384535
RPASRFEVL	9	Unmodified	_RPASRFEVL_					0	0	0		ENSG00000123989|ENST00000243776|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF	ENSG00000123989|ENST00000243776|CHPF	ENSG00000123989|ENST00000243776|CHPF	MULTI-MSMS	OvCa9_classI_Rep2	2	537.8065185546875	2	537.806365	1073.59818	-0.94155	-0.00050637	0.17111	9.2024E-05	-0.77044	-0.00041435	537.8064194762118	69.853	1.4073	67.282	66.915	68.322	-2.5707					86	27	5	0	0	0	0.46356	1	5586	5586		45.972	5.1941	1	1089100			49685	3619	41199	41226	53509	53509					0.0643225394574074
RPASWMAVF	9	Unmodified	_RPASWMAVF_					0	0	0		ENSG00000103042|ENST00000219320|SLC38A7;nc|ENSG00000103042|Q9NVC3-2|SLC38A7;ENST00000562149.5_1_16:58705998-58714030:-|nuORF;ENST00000569209.1_1_16:58710156-58711324:-|nuORF	ENSG00000103042|ENST00000219320|SLC38A7	ENSG00000103042|ENST00000219320|SLC38A7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.8433227539062	2	532.770937	1063.52732	-1.9271	-0.0010267	3.4636	0.0018453	1.5365	0.00081858	532.7727820612729	87.256	1.5046	84.63	84.201	85.706	-2.6269					58	29	3	0	0	0	0.027456	1	7488	7488		35.201	9.6267	1	167390			49686	2275	41200	41227	53510	53510					-0.0019016236342395132
RPASYKRAIG	10	Unmodified	_RPASYKRAIG_					0	0	0		nc|ENSG00000141503|Q8N4C8-3|MINK1	nc|ENSG00000141503|Q8N4C8-3|MINK1	nc|ENSG00000141503|Q8N4C8-3|MINK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.8259887695312	2	559.825089	1117.63563	0.24704	0.0001383	-1.0654	-0.00059641	-0.81832	-0.00045812	559.8245195702754	48.533	1.7084	45.425	44.988	46.697	-3.1077					91	32	5	0	0	0	0.44431	1	2710	2710		62.107	1.9892	1	2308500			49687	15064	41201	41228	53511	53511					0.08151345211354055
RPAVLPLL	8	Unmodified	_RPAVLPLL_					0	0	0		ENSG00000143384|ENST00000369026|MCL1;nc|ENSG00000143384|Q07820-2|MCL1;MCL1-CTSS|2|fusion	ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	MULTI-MSMS	OvCa9_classI_Rep2	2	439.79473876953125	2	439.794738	877.574923	1.2945	0.00056932	-1.0724	-0.00047163	0.22213	9.769E-05	439.79412417711336	110.95	1.5288	110.81	110.34	111.86	-0.13961					80	30	4	0	0	0	0.60486	2	10474	10456;10474		62.978	8.2138	1	290020			49688	5047	41202	41229	53512;53513	53513					0.13123859899098989
RPAVLPLL	8	Unmodified	_RPAVLPLL_					0	0	0		ENSG00000143384|ENST00000369026|MCL1;nc|ENSG00000143384|Q07820-2|MCL1;MCL1-CTSS|2|fusion	ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	439.7947692871094	2	439.794738	877.574923	0.19169	8.4303E-05	-0.20589	-9.0551E-05	-0.014207	-6.2481E-06	439.79451084095996	112.55	1.498	111.04	110.63	112.13	-1.5111					78	29	4	0	0	0	0.59103	2	10395	10395;10421		65.897	11.133	1	384560			49689	5047	41202	41229	53514;53515	53514					0.13123859899098989
RPAVSSWAL	9	Unmodified	_RPAVSSWAL_					0	0	0		nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	MULTI-MSMS	OvCa9_classI_Rep2	2	493.77294921875	2	493.774534	985.534515	-1.0638	-0.00052526	-3.3143	-0.0016365	-4.3781	-0.0021618	493.7727477458053	34.251	1.0885	31.542	31.168	32.257	-2.7097					41	21	3	0	0	0	0.56889	1	1290	1290		35.618	0	1	147330			49690	5408	41203	41230	53516	53516					0.041168935086489
RPAWRLVER	9	Unmodified	_RPAWRLVER_					0	0	0			REV__ENST00000572565.5_1_19:52207497-52207734:+|nuORF	REV__ENST00000572565.5_1_19:52207497-52207734:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	591.32275390625	2	591.846356	1181.67816	-0.8607	-0.0005094	0.78788	0.0004663	-0.072822	-4.3099E-05	591.8466232968174	42.762	0.83932	39.754	39.539	40.378	-3.0074					24	15	2	0	0	0	0.027461	1	1988	1988		49.442	0	1	22072	+		49691	22279	41204	41231	53517	53517					0.09458740339596261
RPCIQGRHL	9	Unmodified	_RPCIQGRHL_					0	0	0			REV__nc|ENSG00000184402|O75177-5|SS18L1	REV__nc|ENSG00000184402|O75177-5|SS18L1	MULTI-MSMS	OvCa9_classI_Rep2	2	540.2984619140625	2	540.298185	1078.58182	-1.8908	-0.0010216	1.5096	0.00081564	-0.38116	-0.00020594	540.2989536670705	38.535	2.9688	35.825	35.469	38.438	-2.7097					158	59	5	0	0	0	0.61208	1	1881	1881		30.504	0	1	1380400	+		49692	29050	41205	41232	53518	53518					0.04566849508000814
RPCIQGRHL	9	Unmodified	_RPCIQGRHL_					0	0	0			REV__nc|ENSG00000184402|O75177-5|SS18L1	REV__nc|ENSG00000184402|O75177-5|SS18L1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.2982788085938	2	540.298185	1078.58182	-0.33982	-0.0001836	-0.64748	-0.00034983	-0.9873	-0.00053343	540.2979670747679	38.277	3.0652	35.351	34.907	37.972	-2.9264					190	60	5	0	0	0	0.55588	1	1575	1575		37.159	2.9866	1	3652900	+		49693	29050	41205	41232	53519	53519					0.04566849508000814
RPCKRFPKP	9	Unmodified	_RPCKRFPKP_					0	0	0			REV__ENSG00000175699|ENST00000636493|CCDC197	REV__ENSG00000175699|ENST00000636493|CCDC197	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.8294067382812	2	564.826578	1127.6386	1.1597	0.00065501	0.70296	0.00039705	1.8626	0.0010521	564.826863229148	56.435	1.8282	53.14	52.92	54.748	-3.2944					87	35	5	0	0	0	0.56889	1	3641	3641		35.618	0	1	938020	+		49694	21910	41206	41233	53520	53520					0.07988897064524281
RPCPVTSFVI	10	Carbamidomethyl (C)	_RPC(Carbamidomethyl (C))PVTSFVI_	RPC(1)PVTSFVI		RPC(69)PVTSFVI		0	1	0			REV__ENSG00000116726|ENST00000357726|PRAMEF12	REV__ENSG00000116726|ENST00000357726|PRAMEF12	MULTI-MSMS	OvCa9_classI_Rep2	2	588.31787109375	2	588.315709	1174.61686	-0.86515	-0.00050898	3.563	0.0020962	2.6979	0.0015872	588.3178156551718	47.322	1.787	44.612	44.142	45.929	-2.7097					114	35	4	0	0	0	0.3976	1	2861	2861		68.787	6.6794	1	1251100	+		49695	18316	41207	41234	53521	53521	201				0.03654047525287751
RPCQRSVPW	9	Unmodified	_RPCQRSVPW_					0	0	0		ENST00000493883.5_1_21:45553616-45561277:+|nuORF	ENST00000493883.5_1_21:45553616-45561277:+|nuORF	ENST00000493883.5_1_21:45553616-45561277:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.8294067382812	2	564.790192	1127.56583	0.37553	0.0002121	-1.7406	-0.00098306	-1.365	-0.00077096	564.788806330871	55.105	2.2883	51.857	51.336	53.625	-3.2474					75	44	2	0	0	0	0.027462	1	3641	3641		44.117	18.543	1	52871			49696	12745	41208	41235	53522	53522					0.007151432711225425
RPCRRRRSKR	10	Unmodified	_RPCRRRRSKR_					0	0	0			REV__ENST00000585403.5_1_17:40719142-40721608:+|nuORF	REV__ENST00000585403.5_1_17:40719142-40721608:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	457.6080017089844	3	457.609333	1369.80617	-3.7462	-0.0017143	0.7547	0.00034536	-2.9915	-0.001369	457.60971240856696	157.06	2.9403	156.83	155.39	158.33	-0.22696					220	89	3	0	0	0	0.8883	1	15962	15962		7.8045	1.1449	1	46638	+		49697	27857	41209	41236	53523	53523					0.1360597738182605
RPDEAERGR	9	Unmodified	_RPDEAERGR_					0	0	0			REV__ENST00000394147.5_2_12:56325825-56330271:+|nuORF	REV__ENST00000394147.5_2_12:56325825-56330271:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.335205078125	2	543.275961	1084.53737	0.025742	1.3985E-05	2.9413	0.0015979	2.967	0.0016119	543.2776597901676	31.568	0.49583	31.568	31.311	31.807	0					21	9	4	0	0	0	0.027461	1	1326	1326		25.574	0	1	130100	+		49698	25292	41210	41237	53524	53524					-0.0015188310449048004
RPDEPDVI	8	Unmodified	_RPDEPDVI_					0	0	0			REV__ENSG00000175874|ENST00000324768|CREG2	REV__ENSG00000175874|ENST00000324768|CREG2	MULTI-MSMS	OvCa99_classI_Rep5	1	470.74176025390625	2	470.740357	939.46616	-0.045934	-2.1623E-05	-0.79306	-0.00037332	-0.83899	-0.00039495	470.7401938888062	65.207	0.79257	65.207	64.955	65.748	0					29	19	3	0	0	0	0.60331	1	5978	5978		63.306	15.391	1	921580	+		49699	21919	41211	41238	53525	53525					-0.005993958618546458
RPDERRFAVF	10	Unmodified	_RPDERRFAVF_					0	0	0		ENST00000560046.1_1_14:24586548-24588423:+|nuORF;nc|ENSG00000100897|Q8TEB1-3|DCAF11;nc|ENSG00000100897|Q8TEB1-2|DCAF11;ENSG00000100897|ENST00000446197|DCAF11	ENST00000560046.1_1_14:24586548-24588423:+|nuORF	ENST00000560046.1_1_14:24586548-24588423:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	431.567138671875	3	431.566794	1291.67855	-0.21835	-9.4231E-05	-0.27669	-0.00011941	-0.49503	-0.00021364	431.5667341351985	72.463	2.7719	70.009	69.644	72.416	-2.4533					174	52	5	0	0	0	0.42298	4	5878	5866;5872;5878;5897		65.157	24.325	1	1932400			49700	2118	41212	41239	53526;53527;53528;53529	53528					0.04438115268794718
RPDERRFAVF	10	Unmodified	_RPDERRFAVF_					0	0	0		ENST00000560046.1_1_14:24586548-24588423:+|nuORF;nc|ENSG00000100897|Q8TEB1-3|DCAF11;nc|ENSG00000100897|Q8TEB1-2|DCAF11;ENSG00000100897|ENST00000446197|DCAF11	ENST00000560046.1_1_14:24586548-24588423:+|nuORF	ENST00000560046.1_1_14:24586548-24588423:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	431.5673522949219	3	431.566794	1291.67855	0.52065	0.00022469	-0.9586	-0.0004137	-0.43795	-0.00018901	431.56642000923193	72.704	3.5674	70.122	69.741	73.308	-2.5816					223	71	6	0	0	0	0.33877	7	3476	3476;3480;3486;3493;3499;3505;3513		76.17	26.634	1	2192400			49701	2118	41212	41239	53530;53531;53532;53533;53534;53535;53536	53530					0.04438115268794718
RPDERRFAVF	10	Unmodified	_RPDERRFAVF_					0	0	0		ENST00000560046.1_1_14:24586548-24588423:+|nuORF;nc|ENSG00000100897|Q8TEB1-3|DCAF11;nc|ENSG00000100897|Q8TEB1-2|DCAF11;ENSG00000100897|ENST00000446197|DCAF11	ENST00000560046.1_1_14:24586548-24588423:+|nuORF	ENST00000560046.1_1_14:24586548-24588423:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	431.5675354003906	3	431.566794	1291.67855	0.3459	0.00014928	-1.1442	-0.00049378	-0.79826	-0.0003445	431.56630698545086	73.926	2.5457	70.695	70.337	72.883	-3.2308					166	52	5	0	0	0	0.44722	4	5746	5746;5757;5770;5782		61.691	16.669	1	1734100			49702	2118	41212	41239	53537;53538;53539;53540	53537					0.04438115268794718
RPDFTVVFV	9	Unmodified	_RPDFTVVFV_					0	0	0			REV__ENSG00000257093|ENST00000536163|DENND11	REV__ENSG00000257093|ENST00000536163|DENND11	MULTI-MSMS	OvCa9_classI_Rep2	2	540.298095703125	2	540.297842	1078.58113	-1.8908	-0.0010216	2.144	0.0011584	0.25319	0.0001368	540.2989536670705	38.535	2.9688	35.825	35.469	38.438	-2.7097					158	59	5	0	0	0	0.59259	1	1839	1839		32.812	2.3088	1	1380400	+		49703	23543	41213	41240	53541	53541					0.04498333339961391
RPDIPIYVGNT	11	Unmodified	_RPDIPIYVGNT_					0	0	0		nc|ENSG00000168405|Q9Y471|CMAHP;nc|ENSG00000168405|Q9Y471-4|CMAHP	nc|ENSG00000168405|Q9Y471|CMAHP	nc|ENSG00000168405|Q9Y471|CMAHP	MULTI-MSMS	OvCa9_classI_Rep2	2	415.5597229003906	3	415.559305	1243.65609	0.31343	0.00013025	0.40748	0.00016933	0.72092	0.00029958	415.5593358589487	32.147	1.7881	29.437	29.085	30.873	-2.7097					72	35	4	0	0	0	0.72497	1	1044	1044		14.779	0.69279	1	86562			49704	15166	41214	41241	53542	53542					0.04400471080521129
RPDKRFRLAL	10	Unmodified	_RPDKRFRLAL_					0	0	0		ENST00000582274.1_1_17:61628029-61629753:+|nuORF;nc|ENSG00000136485|P61962-2|DCAF7;ENSG00000136485|ENST00000614556|DCAF7	ENST00000582274.1_1_17:61628029-61629753:+|nuORF	ENST00000582274.1_1_17:61628029-61629753:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	424.5948486328125	3	424.594684	1270.76222	1.2652	0.00053719	-1.1421	-0.00048494	0.12307	5.2255E-05	424.5941494452476	69.038	2.2056	66.224	65.914	68.119	-2.8144					114	43	4	0	0	0	0.61634	2	3039	3039;3057		40.058	16.535	1	346080			49705	4491	41215	41242	53543;53544	53543					0.13767271436518058
RPDKTIRLA	9	Unmodified	_RPDKTIRLA_					0	0	0			REV__ENST00000510322.2_1_4:56218157-56218307:-|nuORF	REV__ENST00000510322.2_1_4:56218157-56218307:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	535.327392578125	2	535.327465	1068.64038	-1.2502	-0.00066929	0.80875	0.00043294	-0.4415	-0.00023635	535.3279070397938	59.315	2.607	56.535	55.888	58.495	-2.7801					134	49	4	0	0	0	0.33652	1	4284	4284		58.782	4.0056	1	990330	+		49706	26938	41216	41243	53545	53545					0.10880229354143012
RPDLFPTLRN	10	Unmodified	_RPDLFPTLRN_					0	0	0			REV__nc|ENSG00000064102|Q9NVM9-2|INTS13	REV__nc|ENSG00000064102|Q9NVM9-2|INTS13	MULTI-SECPEP	OvCa9_classI_Rep4_	4	614.325439453125	2	614.843479	1227.67241	-0.55823	-0.00034322	3.7521	0.002307	3.1939	0.0019637	614.8457616047756	55.455	1.4195	52.16	51.751	53.171	-3.2944					48	26	2	0	0	0	0.026544	1	3581	3581		64.207	0	1	91281	+		49707	16764	41217	41244	53546	53546					0.0676759703726475
RPDLKHIFSD	10	Unmodified	_RPDLKHIFSD_					0	0	0			REV__tr|A0A7D6VP47|A0A7D6VP47_9CLOTEnergy-couplingfactortransportertransmembraneproteinEcfTOS=ClostridiumintestinaleOX=36845GN=ecfTPE=3SV=1	REV__tr|A0A7D6VP47|A0A7D6VP47_9CLOTEnergy-couplingfactortransportertransmembraneproteinEcfTOS=ClostridiumintestinaleOX=36845GN=ecfTPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	614.325439453125	2	614.327662	1226.64077	0.006484	3.9833E-06	-3.3022	-0.0020286	-3.2957	-0.0020246	614.325648195742	56.139	1.8247	52.845	52.21	54.035	-3.2944					75	35	3	0	0	0	0.43433	1	3581	3581		63.534	1.4264	1	431970	+		49708	31228	41218	41245	53547	53547					0.0365160428332274
RPDLKHIFSD	10	Unmodified	_RPDLKHIFSD_					0	0	0			REV__tr|A0A7D6VP47|A0A7D6VP47_9CLOTEnergy-couplingfactortransportertransmembraneproteinEcfTOS=ClostridiumintestinaleOX=36845GN=ecfTPE=3SV=1	REV__tr|A0A7D6VP47|A0A7D6VP47_9CLOTEnergy-couplingfactortransportertransmembraneproteinEcfTOS=ClostridiumintestinaleOX=36845GN=ecfTPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	614.327662	1226.64077	-1.4534	-0.00089289	-1.6098	-0.00098897	-3.0633	-0.0018819	614.3266933710524	55.806	1.5352	53.003	52.582	54.117	-2.804	0.078881	0.00098766	NaN	63.534	57	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112800	+		49709	31228	41218	41245							0.0365160428332274
RPDLKHIFSD	10	Unmodified	_RPDLKHIFSD_					0	0	0			REV__tr|A0A7D6VP47|A0A7D6VP47_9CLOTEnergy-couplingfactortransportertransmembraneproteinEcfTOS=ClostridiumintestinaleOX=36845GN=ecfTPE=3SV=1	REV__tr|A0A7D6VP47|A0A7D6VP47_9CLOTEnergy-couplingfactortransportertransmembraneproteinEcfTOS=ClostridiumintestinaleOX=36845GN=ecfTPE=3SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	614.327662	1226.64077	0.006484	3.9833E-06	-3.3022	-0.0020286	-3.2957	-0.0020246	614.325648195742	56.139	1.8247	52.845	52.21	54.035	-3.2944	-0.078881	-0.0010917	NaN	63.534	75	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	431970	+		49710	31228	41218	41245							0.0365160428332274
RPDLLCLR	8	Carbamidomethyl (C)	_RPDLLC(Carbamidomethyl (C))LR_	RPDLLC(1)LR		RPDLLC(61)LR		0	1	0			REV__ENST00000560966.5_1_15:85188615-85189170:-|nuORF	REV__ENST00000560966.5_1_15:85188615-85189170:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	521.7946166992188	2	521.794943	1041.57533	-0.84262	-0.00043968	1.8993	0.00099103	1.0566	0.00055135	521.7951886456917	77.54	1.6221	75.187	74.629	76.251	-2.3527					89	31	4	0	0	0	0.61436	1	4053	4053		60.972	6.1956	1	557750	+		49711	21983	41219	41246	53548	53548	250				0.0562091155663893
RPDMRLIET	9	Unmodified	_RPDMRLIET_					0	0	0			REV__ENST00000493792.1_1_2:3482527-3483229:+|nuORF	REV__ENST00000493792.1_1_2:3482527-3483229:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	565.7987060546875	2	565.802965	1129.59138	-2.4631	-0.0013936	-4.3178	-0.002443	-6.7808	-0.0038366	565.8004097051485	35.939	0.94262	33.229	32.95	33.893	-2.7097					48	18	4	0	0	0	0.46356	1	1512	1512		45.972	7.1661	1	164810	+		49712	21653	41220	41247	53549	53549					0.031765730028837424
RPDNDGFRAK	10	Unmodified	_RPDNDGFRAK_					0	0	0		ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	ENSG00000102452|ENST00000251127|NALCN	MULTI-MSMS	OvCa9_classI_Rep4_	4	588.300537109375	2	588.299436	1174.58432	-0.42429	-0.00024961	1.3282	0.0007814	0.90394	0.00053179	588.3001914952855	63.758	1.3538	60.283	59.868	61.222	-3.475					76	27	3	0	0	0	0.53807	1	4517	4517		49.536	0.094497	1	1274500			49713	2239	41221	41248	53550	53550					0.004009764466673005
RPDNLAAPLN	10	Unmodified	_RPDNLAAPLN_					0	0	0			REV__nc|ENSG00000143952|Q9P1Q0-4|VPS54	REV__nc|ENSG00000143952|Q9P1Q0-4|VPS54	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.7880859375	2	540.793455	1079.57236	-1.343	-0.00072627	-3.9109	-0.002115	-5.2538	-0.0028412	540.7912779187661	40.455	0.7806	37.501	37.112	37.893	-2.9541					38	14	4	0	0	0	0.66944	1	1756	1756		33.922	1.1092	1	219080	+		49714	19878	41222	41249	53551	53551					0.035753597034727136
RPDPKQEKK	9	Unmodified	_RPDPKQEKK_					0	0	0		ENST00000468834.1_1_10:33346560-33347304:-|nuORF	ENST00000468834.1_1_10:33346560-33347304:-|nuORF	ENST00000468834.1_1_10:33346560-33347304:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.3234252929688	2	563.32238	1124.63021	0.50277	0.00028322	-1.2952	-0.00072963	-0.79245	-0.00044641	563.3217398821847	55.481	2.0308	52.186	51.597	53.628	-3.2944					113	39	4	0	0	0	0.49652	2	3525	3512;3525		42.864	5.0528	1	1921700			49715	12336	41223	41250	53552;53553	53553					0.07287621628893248
RPDPQLRL	8	Unmodified	_RPDPQLRL_					0	0	0		TRIM42|p.Q611Lfs*33|1|0.05|ENSG00000155890|chr3:140688513-140688514|-/TTAAAGCTGACAAGGAGGCAAAGCGAAA|frameshift_variant;ENSG00000155890|ENST00000286349|TRIM42	TRIM42|p.Q611Lfs*33|1|0.05|ENSG00000155890|chr3:140688513-140688514|-/TTAAAGCTGACAAGGAGGCAAAGCGAAA|frameshift_variant	TRIM42|p.Q611Lfs*33|1|0.05|ENSG00000155890|chr3:140688513-140688514|-/TTAAAGCTGACAAGGAGGCAAAGCGAAA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.8069152832031	2	497.793258	993.571963	-1.2762	-0.00063526	0.84207	0.00041918	-0.43409	-0.00021609	497.7935874306597	50.669	1.1181	47.495	47.205	48.323	-3.1734					49	21	3	0	0	0	0.028476	1	2903	2903		37.159	0	1	172210			49716	5807	41224	41251	53554	53554					0.07491984774276261
RPDPQLRL	8	Unmodified	_RPDPQLRL_					0	0	0		TRIM42|p.Q611Lfs*33|1|0.05|ENSG00000155890|chr3:140688513-140688514|-/TTAAAGCTGACAAGGAGGCAAAGCGAAA|frameshift_variant;ENSG00000155890|ENST00000286349|TRIM42	TRIM42|p.Q611Lfs*33|1|0.05|ENSG00000155890|chr3:140688513-140688514|-/TTAAAGCTGACAAGGAGGCAAAGCGAAA|frameshift_variant	TRIM42|p.Q611Lfs*33|1|0.05|ENSG00000155890|chr3:140688513-140688514|-/TTAAAGCTGACAAGGAGGCAAAGCGAAA|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	497.793258	993.571963	-1.2143	-0.00060446	0.6149	0.00030609	-0.59937	-0.00029836	497.7934091520043	50.529	0.89104	47.735	47.281	48.172	-2.794	0.11964	-0.00014624	NaN	45.952	32	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40824			49717	5807	41224	41251							0.07491984774276261
RPDPVEVIGV	10	Unmodified	_RPDPVEVIGV_					0	0	0			REV__tr|A0A553SHM9|A0A553SHM9_NIACIRibosome-bindingATPaseYchFOS=NialliacirculansOX=1397GN=ychFPE=3SV=1	REV__tr|A0A553SHM9|A0A553SHM9_NIACIRibosome-bindingATPaseYchFOS=NialliacirculansOX=1397GN=ychFPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	540.8045043945312	2	540.806031	1079.59751	-2.4915	-0.0013474	0.49364	0.00026696	-1.9979	-0.0010805	540.8058905637274	34.869	1.1922	32.159	31.91	33.102	-2.7097					80	23	5	0	0	0	0.59317	1	1404	1404		42.864	2.0861	1	239100	+		49718	29819	41225	41252	53555	53555					0.060894145060501614
RPDPVEVIGV	10	Unmodified	_RPDPVEVIGV_					0	0	0			REV__tr|A0A553SHM9|A0A553SHM9_NIACIRibosome-bindingATPaseYchFOS=NialliacirculansOX=1397GN=ychFPE=3SV=1	REV__tr|A0A553SHM9|A0A553SHM9_NIACIRibosome-bindingATPaseYchFOS=NialliacirculansOX=1397GN=ychFPE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	540.806031	1079.59751	0.072112	3.8999E-05	1.9012	0.0010282	1.9733	0.0010672	541.3085461185303	31.882	0.39752	31.882	31.658	32.055	0	-0.19332	0.0021293	NaN	42.864	17	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182370	+		49719	29819	41225	41252							0.060894145060501614
RPDPVEVIGV	10	Unmodified	_RPDPVEVIGV_					0	0	0			REV__tr|A0A553SHM9|A0A553SHM9_NIACIRibosome-bindingATPaseYchFOS=NialliacirculansOX=1397GN=ychFPE=3SV=1	REV__tr|A0A553SHM9|A0A553SHM9_NIACIRibosome-bindingATPaseYchFOS=NialliacirculansOX=1397GN=ychFPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	540.806031	1079.59751	0.16348	8.8411E-05	-2.4692	-0.0013354	-2.3057	-0.001247	540.8043913970743	35.033	0.75451	32.184	31.886	32.64	-2.849	0.10904	-0.0025978	NaN	42.864	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24794	+		49720	29819	41225	41252							0.060894145060501614
RPDQARAL	8	Unmodified	_RPDQARAL_					0	0	0			REV__ENST00000541377.5_1_2:122095688-122096171:-|nuORF	REV__ENST00000541377.5_1_2:122095688-122096171:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.77325439453125	2	463.761958	925.509363	0.64552	0.00029937	-0.86175	-0.00039965	-0.21623	-0.00010028	463.76146124601223	36.847	0.89632	33.954	33.695	34.591	-2.8925					35	17	4	0	0	0	0.028476	1	1305	1305		45.952	0	1	67567	+		49721	27368	41226	41253	53556	53556					0.04362838706072125
RPDRGFGRI	9	Unmodified	_RPDRGFGRI_					0	0	0			REV__TG|p.G2375R|1|0.36|ENSG00000042832|chr8:133029907-133029907|G/A|missense_variant	REV__TG|p.G2375R|1|0.36|ENSG00000042832|chr8:133029907-133029907|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.3026733398438	2	537.301781	1072.58901	-1.0632	-0.00057128	0.29474	0.00015837	-0.76849	-0.00041291	537.3019395810854	51.721	1.2615	48.548	48.224	49.486	-3.1734					69	24	4	0	0	0	0.16562	1	3059	3059		82.241	5.4664	1	495070	+		49722	29496	41227	41254	53557	53557					0.05561905380091048
RPDRRERML	9	Unmodified	_RPDRRERML_					0	0	0		ENSG00000167123|ENST00000372838|CERCAM;nc|ENSG00000167123|Q5T4B2-2|CERCAM	ENSG00000167123|ENST00000372838|CERCAM	ENSG00000167123|ENST00000372838|CERCAM	MULTI-MSMS	OvCa9_classI_Rep2	2	410.2275085449219	3	410.227896	1227.66186	-0.59157	-0.00024268	0.65055	0.00026687	0.058972	2.4192E-05	410.22807386978417	38.111	1.8292	35.402	35.124	36.953	-2.7097					84	36	4	0	0	0	0.58322	1	1751	1751		33.922	4.3709	1	218460			49723	6760	41228	41255	53558	53558					0.0571329111119212
RPDSTHLLVF	10	Unmodified	_RPDSTHLLVF_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4;ITGB4|p.D539*|1|0.13|ENSG00000132470|chr17:75733648-75733649|-/C|frameshift_variant;ITGB4|p.L550Ifs*220|1|0.07|ENSG00000132470|chr17:75733682-75733683|-/AT|frameshift_variant;ITGB4|p.N318Tfs*58|1|0.73|ENSG00000132470|chr17:75730454-75730454|A/-|frameshift_variant	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	OvCa9_classI_Rep2	2	592.824462890625	2	592.824755	1183.63496	-0.62327	-0.00036949	-0.091332	-5.4144E-05	-0.7146	-0.00042363	592.8246839253696	95.32	2.6195	94.292	93.923	96.542	-1.0281					186	52	8	0	0	0	0.22511	14	8560	8545;8548;8554;8560;8565;8571;8577;8584;8590;8596;8603;8609;8616;8622		90.601	41.159	1	2906500			49724	4140	41229	41256	53559;53560;53561;53562;53563;53564;53565;53566;53567;53568;53569;53570;53571;53572	53562					0.05048505771651435
RPDSTHLLVF	10	Unmodified	_RPDSTHLLVF_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4;ITGB4|p.D539*|1|0.13|ENSG00000132470|chr17:75733648-75733649|-/C|frameshift_variant;ITGB4|p.L550Ifs*220|1|0.07|ENSG00000132470|chr17:75733682-75733683|-/AT|frameshift_variant;ITGB4|p.N318Tfs*58|1|0.73|ENSG00000132470|chr17:75730454-75730454|A/-|frameshift_variant	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	OvCa9_classI_Rep3	3	592.8253173828125	2	592.824755	1183.63496	-1.0112	-0.00059946	0.48243	0.000286	-0.52875	-0.00031346	592.8250901635878	96.351	2.479	94.522	94.075	96.554	-1.8286					176	48	7	0	0	0	0.17251	14	6323	6312;6318;6323;6329;6334;6340;6346;6352;6358;6364;6371;6379;6385;6392		98.582	43.806	1	3540900			49725	4140	41229	41256	53573;53574;53575;53576;53577;53578;53579;53580;53581;53582;53583;53584;53585;53586	53575					0.05048505771651435
RPDSTHLLVF	10	Unmodified	_RPDSTHLLVF_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4;ITGB4|p.D539*|1|0.13|ENSG00000132470|chr17:75733648-75733649|-/C|frameshift_variant;ITGB4|p.L550Ifs*220|1|0.07|ENSG00000132470|chr17:75733682-75733683|-/AT|frameshift_variant;ITGB4|p.N318Tfs*58|1|0.73|ENSG00000132470|chr17:75730454-75730454|A/-|frameshift_variant	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	OvCa9_classI_Rep4_	4	592.824951171875	2	592.824755	1183.63496	1.396	0.00082761	-2.0509	-0.0012158	-0.65483	-0.0003882	592.8235652451264	96.965	2.0606	94.539	94.118	96.179	-2.4256					141	40	5	0	0	0	0.15491	7	8565	8553;8565;8577;8588;8600;8612;8624		101.25	58.856	1	3169900			49726	4140	41229	41256	53587;53588;53589;53590;53591;53592;53593	53588					0.05048505771651435
RPDTKRLV	8	Unmodified	_RPDTKRLV_					0	0	0			REV__ENSG00000062485|ENST00000351328|CS	REV__ENSG00000062485|ENST00000351328|CS	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.80224609375	2	492.801083	983.587613	0.48653	0.00023976	-1.4785	-0.00072861	-0.99198	-0.00048885	492.8003668451582	60.85	2.2415	57.42	57.095	59.336	-3.43					111	45	3	0	0	0	0.68714	1	4202	4202		45.952	1.8352	1	4101800	+		49727	16751	41230	41257	53594	53594					0.09516271291317935
RPDYHDSL	8	Unmodified	_RPDYHDSL_					0	0	0			REV__tr|A0A553SUD7|A0A553SUD7_NIACIZincmetallopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_06830PE=4SV=1	REV__tr|A0A553SUD7|A0A553SUD7_NIACIZincmetallopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_06830PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	502.2862243652344	2	501.735606	1001.45666	-1.3546	-0.00067966	3.3093	0.0016604	1.9547	0.00098073	501.7375619317619	84.016	0.41834	82.47	82.275	82.693	-1.5462					11	7	2	0	0	0	0.028476	1	7236	7236		38.806	13.356	1	8674.2	+		49728	31065	41231	41258	53595	53595					-0.04401164147395775
RPDYHDSL	8	Unmodified	_RPDYHDSL_					0	0	0			REV__tr|A0A553SUD7|A0A553SUD7_NIACIZincmetallopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_06830PE=4SV=1	REV__tr|A0A553SUD7|A0A553SUD7_NIACIZincmetallopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_06830PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	501.735606	1001.45666	0.71547	0.00035898	3.6156	0.0018141	4.3311	0.0021731	501.7367904368976	84.977	0.72874	82.33	81.931	82.66	-2.6463	-0.069702	0.00011409	NaN	44.117	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26766	+		49729	31065	41231	41258							-0.04401164147395775
RPEAHRAP	8	Unmodified	_RPEAHRAP_					0	0	0			REV__ENST00000303004.4_1_20:48807959-48808286:+|nuORF	REV__ENST00000303004.4_1_20:48807959-48808286:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	467.25396728515625	2	467.2543	932.494047	-0.8643	-0.00040385	0.4304	0.00020111	-0.4339	-0.00020274	467.25437113680414	27.316	0.39981	27.316	27.142	27.542	0					13	7	3	0	0	0	0.72896	1	799	799		37.159	0.13063	1	100600	+		49730	24268	41232	41259	53596	53596					0.025099719088871097
RPEAKQLA	8	Unmodified	_RPEAKQLA_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	OvCa9_classI_Rep2	2	456.76641845703125	2	456.766709	911.518865	-1.0943	-0.00049982	1.1247	0.00051372	0.03042	1.3895E-05	456.76710390256716	37.466	1.7255	34.756	34.386	36.112	-2.7097					82	34	4	0	0	0	0.68714	1	1695	1695		45.952	3.5558	1	799280	+		49731	18991	41233	41260	53597	53597					0.05956606991594526
RPEEELLPA	9	Unmodified	_RPEEELLPA_					0	0	0		ENST00000482312.1_1_6:31918808-31919804:+|nuORF	ENST00000482312.1_1_6:31918808-31919804:+|nuORF	ENST00000482312.1_1_6:31918808-31919804:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.311279296875	2	527.282389	1052.55022	-0.27696	-0.00014604	-1.7249	-0.00090949	-2.0018	-0.0010555	527.2831812195681	44.987	0.31966	44.987	44.795	45.114	0					9	6	2	0	0	0	0.027462	1	3079	3079		27.882	0	1	34376			49732	12568	41234	41261	53598	53598					0.026051352350577872
RPEEGRPVV	9	Unmodified	_RPEEGRPVV_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4;ENST00000482752.1_1_3:47918864-47969739:-|nuORF;ENST00000497735.1_1_3:47918864-47932940:-|nuORF;nc|ENSG00000047849|P27816-3|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	OvCa9_classI_Rep2	2	519.787353515625	2	519.788173	1037.56179	1.0895	0.00056629	-1.1587	-0.00060228	-0.069245	-3.5993E-05	519.7873447813638	42.542	1.1866	39.833	39.571	40.758	-2.7097					54	23	4	0	0	0	0.2422	5	2304	2296;2304;2310;2316;2323		69.628	11.94	1	186670			49733	1151	41235	41262	53599;53600;53601;53602;53603	53600					0.04451377049053917
RPEEGRPVV	9	Unmodified	_RPEEGRPVV_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-5|MAP4;nc|ENSG00000047849|P27816-4|MAP4;ENST00000482752.1_1_3:47918864-47969739:-|nuORF;ENST00000497735.1_1_3:47918864-47932940:-|nuORF;nc|ENSG00000047849|P27816-3|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.7881469726562	2	519.788173	1037.56179	-1.3497	-0.00070156	0.48164	0.00025035	-0.86807	-0.00045121	519.788411690526	42.815	1.5028	39.808	39.486	40.989	-3.0074					69	28	5	0	0	0	0.083631	4	2023	2003;2011;2023;2050		101.6	39.189	1	1003900			49734	1151	41235	41262	53604;53605;53606;53607	53606					0.04451377049053917
RPEETRWVLS	10	Unmodified	_RPEETRWVLS_					0	0	0		ENST00000221265.7_1_19:39881539-39881815:-|nuORF	ENST00000221265.7_1_19:39881539-39881815:-|nuORF	ENST00000221265.7_1_19:39881539-39881815:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	423.9226989746094	3	424.894688	1271.66223	-0.9976	-0.00042387	-0.66977	-0.00028458	-1.6674	-0.00070845	425.22925743484717	43.947	0.64907	40.94	40.744	41.393	-3.0074					18	12	2	0	0	0	0.027062	1	2183	2183		22.562	0	1	22004			49735	9690	41236	41263	53608	53608					0.037269893120537745
RPEKLVDEYP	10	Unmodified	_RPEKLVDEYP_					0	0	0		tr|A0A553SFL3|A0A553SFL3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09110PE=3SV=1	tr|A0A553SFL3|A0A553SFL3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09110PE=3SV=1	tr|A0A553SFL3|A0A553SFL3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09110PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	415.5597839355469	3	415.88731	1244.6401	0.42005	0.00017469	-3.9637	-0.0016485	-3.5437	-0.0014738	416.2201113961729	32.017	0.39614	29.307	29.085	29.481	-2.7097					10	7	2	0	0	0	0.027349	1	1014	1014		20.837	1.5745	1	13108			49736	33048	41237	41264	53609	53609					0.02756764843638848
RPELGGQAD	9	Unmodified	_RPELGGQAD_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.7562561035156	2	471.735606	941.456658	1.0744	0.00050685	3.1203	0.001472	4.1948	0.0019788	471.7369263304098	60.056	1.3865	56.626	56.358	57.744	-3.43					59	27	4	0	0	0	0.027462	1	4039	4039		44.117	0	1	311340	+		49737	16701	41238	41265	53610	53610					-0.016411641473837335
RPELIPEDL	9	Unmodified	_RPELIPEDL_					0	0	0		nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12;ENST00000529970.5_1_11:120278459-120348246:+|nuORF;ARHGEF12|p.S634Lfs*6|1|0.03|ENSG00000196914|chr11:120451564-120451565|-/C|frameshift_variant;ENST00000525960.1_1_11:120316133-120317795:+|nuORF	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.345458984375	2	541.298039	1080.58152	-0.18294	-9.9025E-05	-0.20662	-0.00011185	-0.38956	-0.00021087	541.2978192017517	81.989	1.1977	80.34	79.919	81.117	-1.6485					29	22	2	0	0	0	0.027441	1	6959	6959		49.442	0	1	57242			49738	8658	41239	41266	53611	53611					0.04445708269122406
RPELNTAVFDQ	11	Unmodified	_RPELNTAVFDQ_					0	0	0			REV__CACNA1D-DNAH1|1|fusion;REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__CACNA1D-DNAH1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	645.3251342773438	2	645.327859	1288.64116	-1.4341	-0.00092546	-0.9997	-0.00064514	-2.4338	-0.0015706	645.327117611008	98.778	3.0684	97.885	96.974	100.04	-0.89305					168	61	4	0	0	0	0.69735	1	8985	8985		30.569	2.4874	1	979390	+		49739	15726;18203	41240	41267	53612	53612					0.00838979212517188
RPELVRPAL	9	Unmodified	_RPELVRPAL_					0	0	0		ENSG00000196139|ENST00000380554|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;ENST00000480697.6_1_10:5136636-5139787:+|nuORF;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF	ENSG00000196139|ENST00000380554|AKR1C3	ENSG00000196139|ENST00000380554|AKR1C3	MULTI-MSMS	OvCa9_classI_Rep3	3	525.82373046875	2	525.824558	1049.63456	-0.22206	-0.00011677	-0.21788	-0.00011457	-0.43994	-0.00023133	525.8243606419646	71.609	1.7333	69.007	68.633	70.366	-2.6023					56	34	2	0	0	0	0.1804	3	3351	3343;3351;3356		79.713	35.335	1	678040			49740	5570	41241	41268	53613;53614;53615	53614					0.11173130842439605
RPELVRPAL	9	Unmodified	_RPELVRPAL_					0	0	0		ENSG00000196139|ENST00000380554|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;ENST00000480697.6_1_10:5136636-5139787:+|nuORF;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF	ENSG00000196139|ENST00000380554|AKR1C3	ENSG00000196139|ENST00000380554|AKR1C3	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.8250732421875	2	525.824558	1049.63456	-1.8924	-0.00099509	0.9954	0.0005234	-0.89704	-0.00047168	525.8249876208102	72.639	1.0669	69.243	68.96	70.027	-3.3961					42	21	2	0	0	0	0.40818	1	5594	5594		51.193	11.94	1	428610			49741	5570	41241	41268	53616	53616					0.11173130842439605
RPELVRPAL	9	Unmodified	_RPELVRPAL_					0	0	0		ENSG00000196139|ENST00000380554|AKR1C3;ENSG00000187134|ENST00000380872|AKR1C1;ENSG00000151632|ENST00000380753|AKR1C2;ENST00000480697.6_1_10:5136636-5139787:+|nuORF;nc|ENSG00000151632|P52895-2|AKR1C2;ENST00000460124.5_1_10:5042672-5046051:-|nuORF;ENST00000477661.1_1_10:5005492-5009304:+|nuORF	ENSG00000196139|ENST00000380554|AKR1C3	ENSG00000196139|ENST00000380554|AKR1C3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	525.824558	1049.63456	0.45878	0.00024124	-0.64138	-0.00033725	-0.1826	-9.6013E-05	525.8241105525835	71.395	1.0488	68.888	68.594	69.642	-2.5071	-0.15799	-0.00056772	NaN	79.713	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	359900			49742	5570	41241	41268							0.11173130842439605
RPENRSFYL	9	Unmodified	_RPENRSFYL_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;ENST00000566158.5_1_16:89962405-89965058:+|nuORF;ENST00000563636.5_1_16:89961526-89967207:+|nuORF;ENST00000570116.6_1_16:89962405-89970614:+|nuORF	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-MSMS	OvCa9_classI_Rep4_	4	591.30810546875	2	591.306729	1180.59891	1.1543	0.00068253	-1.5444	-0.00091324	-0.39017	-0.00023071	591.3057314431584	67.961	1.5675	64.471	64.186	65.753	-3.4902					83	31	4	0	0	0	0.2422	1	5014	5014		69.628	7.5202	1	735160			49743	4889	41242	41269	53617	53617					0.01583048594829961
RPERGIDVP	9	Unmodified	_RPERGIDVP_					0	0	0			REV__ENST00000464807.1_1_22:21348995-21349371:+|nuORF	REV__ENST00000464807.1_1_22:21348995-21349371:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	519.7877807617188	2	519.788173	1037.56179	1.0895	0.00056629	-1.1587	-0.00060228	-0.069245	-3.5993E-05	519.7873447813638	42.542	1.1866	39.833	39.571	40.758	-2.7097					54	23	4	0	0	0	0.28934	1	2292	2292		64.207	0	1	186670	+		49744	26158	41243	41270	53618	53618					0.04451377049053917
RPETPKQTGP	10	Unmodified	_RPETPKQTGP_					0	0	0		nc|ENSG00000171634|Q12830|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830-4|BPTF	nc|ENSG00000171634|Q12830|BPTF	nc|ENSG00000171634|Q12830|BPTF	MULTI-MSMS	OvCa9_classI_Rep2	2	555.7979736328125	2	555.798737	1109.58292	0.67356	0.00037436	-1.2184	-0.00067718	-0.54484	-0.00030282	555.7980692819577	66.887	2.2263	64.226	63.651	65.878	-2.661					106	44	4	0	0	0	0.52439	1	5188	5188		51.193	1.6567	1	1196600			49745	7221	41244	41271	53619	53619					0.03251342357930298
RPFAQPLSL	9	Unmodified	_RPFAQPLSL_					0	0	0			REV__nc|ENSG00000188368|A6NJB7-2|PRR19	REV__nc|ENSG00000188368|A6NJB7-2|PRR19	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.7978515625	2	514.798009	1027.58147	-1.2563	-0.00064674	1.5853	0.00081613	0.32904	0.00016939	514.7986584541151	118.35	1.0002	117.01	116.58	117.58	-1.3444					45	18	4	0	0	0	0.42676	2	11086	11073;11086		49.442	6.7194	1	167630	+		49746	22710	41245	41272	53620;53621	53621					0.06877753059802671
RPFARTCTL	9	Unmodified	_RPFARTCTL_					0	0	0			REV__ENST00000494569.5_1_3:147109809-147110196:-|nuORF	REV__ENST00000494569.5_1_3:147109809-147110196:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.8433227539062	2	532.787118	1063.55968	-3.6234	-0.0019305	-3.7175	-0.0019806	-7.3409	-0.0039111	532.7874673852249	88.079	0.80389	85.476	85.129	85.933	-2.6027					39	15	4	0	0	0	0.027462	1	7488	7488		34.173	5.0025	1	302770	+		49747	26729	41246	41273	53622	53622					0.030446250395925745
RPFERIMQL	9	Unmodified	_RPFERIMQL_					0	0	0		ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	MULTI-MSMS	OvCa9_classI_Rep2	2	595.32861328125	2	595.32915	1188.64375	-0.28371	-0.0001689	0.28296	0.00016846	-0.00074859	-4.4566E-07	595.3291338724058	92.854	1.0776	91.686	91.341	92.418	-1.168					64	20	4	0	0	0	0.37135	1	8287	8287		54.776	4.7518	1	309200			49748	2903	41247	41274	53623	53623					0.05697156136488957
RPFERTITM	9	Oxidation (M)	_RPFERTITM(Oxidation (M))_		RPFERTITM(1)		RPFERTITM(72)	0	0	1		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	OvCa9_classI_Rep2	2	583.8023681640625	2	583.802965	1165.59138	-1.251	-0.00073034	0.27486	0.00016046	-0.97615	-0.00056988	583.8030699874896	54.091	2.1426	51.277	50.677	52.82	-2.8139					121	42	5	0	0	0	0.22621	4	3687	3687;3699;3705;3719		71.877	20.542	1	1035800			49749	4601	41248	41275	53624;53625;53626;53627	53624		147			0.015205730028583275
RPFERTITM	9	Oxidation (M)	_RPFERTITM(Oxidation (M))_		RPFERTITM(1)		RPFERTITM(75)	0	0	1		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	OvCa9_classI_Rep4_	4	583.8042602539062	2	583.802965	1165.59138	-1.6735	-0.00097701	0.33995	0.00019846	-1.3336	-0.00077854	583.8032516389169	54.354	2.9552	51.106	50.568	53.523	-3.2474					155	57	5	0	0	0	0.2077	4	3361	3361;3373;3385;3397		75.043	29.071	1	4877900			49750	4601	41248	41275	53628;53629;53630;53631	53628		147			0.015205730028583275
RPFERTITM	9	Unmodified	_RPFERTITM_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8062133789062	2	575.805508	1149.59646	-1.5585	-0.0008974	1.1126	0.00064066	-0.44588	-0.00025674	575.8061314868513	68.769	2.3919	66.148	65.622	68.014	-2.6203					144	47	5	0	0	0	0.13504	4	5440	5416;5428;5434;5440		87.696	30.975	1	2257900			49751	4601	41248	41276	53632;53633;53634;53635	53635					0.02764876865489896
RPFERTITM	9	Unmodified	_RPFERTITM_					0	0	0		nc|ENSG00000137575|O00560-3|SDCBP;nc|ENSG00000137575|O00560-2|SDCBP;ENSG00000137575|ENST00000260130|SDCBP;ENST00000523441.1_1_8:59490633-59492419:+|nuORF	nc|ENSG00000137575|O00560-3|SDCBP	nc|ENSG00000137575|O00560-3|SDCBP	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8055419921875	2	575.805508	1149.59646	-0.0096282	-5.544E-06	-0.20612	-0.00011869	-0.21575	-0.00012423	575.8052800300222	68.903	2.2525	66.088	65.661	67.914	-2.8144					103	44	4	0	0	0	0.3076	5	3029	3019;3023;3029;3063;3069		62.107	19.243	1	857000			49752	4601	41248	41276	53636;53637;53638;53639;53640	53638					0.02764876865489896
RPFESRMPHL	10	Unmodified	_RPFESRMPHL_					0	0	0		ENSG00000189132|ENST00000329357|FAM47B	ENSG00000189132|ENST00000329357|FAM47B	ENSG00000189132|ENST00000329357|FAM47B	MULTI-SECPEP	OvCa9_classI_Rep3	3	424.59466552734375	3	423.88888	1268.64481	1.2723	0.00053932	-2.9297	-0.0012418	-1.6573	-0.00070253	423.8872600790657	69.21	1.5926	66.395	66.063	67.655	-2.8144					48	31	3	0	0	0	0.027117	1	3050	3050		28.081	13.388	1	40175			49753	8537	41249	41277	53641	53641					0.021233705054100938
RPFESRMPHL	10	Unmodified	_RPFESRMPHL_					0	0	0		ENSG00000189132|ENST00000329357|FAM47B	ENSG00000189132|ENST00000329357|FAM47B	ENSG00000189132|ENST00000329357|FAM47B	MULTI-MATCH	OvCa9_classI_Rep2	2		3	423.88888	1268.64481	-0.803	-0.00034038	-1.3805	-0.00058518	-2.1835	-0.00092556	423.88813324608645	68.76	0.89632	66.139	65.869	66.765	-2.6203	-0.12797	0.0012386	NaN	28.081	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25987			49754	8537	41249	41277							0.021233705054100938
RPFEVLMQF	9	Unmodified	_RPFEVLMQF_					0	0	0		ENST00000479606.5_1_22:21333956-21351634:+|nuORF;ENSG00000099949|ENST00000646124|LZTR1;CRKL-LZTR1|1|fusion	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	ENST00000479606.5_1_22:21333956-21351634:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	583.8041381835938	2	583.804977	1165.5954	-1.6735	-0.00097701	-3.1053	-0.0018129	-4.7789	-0.0027899	583.8032516389169	54.354	2.9552	51.106	50.568	53.523	-3.2474					155	57	5	0	0	0	0.38969	1	3411	3411		52.937	5.0211	1	4877900			49755	680	41250	41278	53642	53642					0.01922662496576777
RPFFLGDLW	9	Unmodified	_RPFFLGDLW_					0	0	0			REV__ENSG00000130758|ENST00000253055|MAP3K10	REV__ENSG00000130758|ENST00000253055|MAP3K10	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8052978515625	2	575.805834	1149.59712	-0.0096282	-5.544E-06	-0.77222	-0.00044465	-0.78185	-0.00045019	575.8052800300222	68.903	2.2525	66.088	65.661	67.914	-2.8144					103	44	4	0	0	0	0.55588	1	3048	3048		37.159	2.0071	1	857000	+		49756	18968	41251	41279	53643	53643					0.02830039576838317
RPFFPRAK	8	Unmodified	_RPFFPRAK_					0	0	0		ENST00000553338.1_1_14:76452564-76488738:+|nuORF	ENST00000553338.1_1_14:76452564-76488738:+|nuORF	ENST00000553338.1_1_14:76452564-76488738:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	510.25634765625	2	509.800886	1017.58722	-1.4478	-0.00073812	1.8019	0.00091862	0.35407	0.00018051	509.80169018077265	93.307	0.60056	91.346	91.128	91.729	-1.9617					18	11	2	0	0	0	0.028476	1	6008	6008		12.959	0	1	25401			49757	13623	41252	41280	53644	53644					0.07912896362131505
RPFGAQTLL	9	Unmodified	_RPFGAQTLL_					0	0	0			REV__ENST00000554503.5_1_12:57628981-57629323:-|nuORF	REV__ENST00000554503.5_1_12:57628981-57629323:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.7936096191406	2	501.790184	1001.56581	-0.73069	-0.00036665	-1.28	-0.0006423	-2.0107	-0.001009	501.78962794839424	74.495	0.87735	72.085	71.944	72.822	-2.4106					26	17	2	0	0	0	0.027462	1	3789	3789		16.473	1.6083	1	101240	+		49758	27528	41253	41281	53645	53645					0.06509466542775044
RPFGRQLR	8	Unmodified	_RPFGRQLR_					0	0	0		ENST00000353258.7_1_16:19528441-19533090:-|nuORF	ENST00000353258.7_1_16:19528441-19533090:-|nuORF	ENST00000353258.7_1_16:19528441-19533090:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.8112182617188	2	515.306867	1028.59918	1.6691	0.00086009	2.8678	0.0014778	4.5369	0.0023379	515.3082519868889	102.97	0.70849	102.97	102.72	103.43	0					31	16	2	0	0	0	0.028476	1	11545	11545		31.955	8.9124	1	1649400			49759	10655	41254	41282	53646	53646					0.08602513105302023
RPFIRRLPEFK	11	Unmodified	_RPFIRRLPEFK_					0	0	0		ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.95831298828125	3	486.961256	1457.86194	-6.3941	-0.0031137	1.5633	0.00076127	-4.8308	-0.0023524	486.96182500070705	161.6	3.2719	159.97	158.36	161.63	-1.6239					171	80	4	0	0	0	0.72524	1	16009	16009		12.433	2.7867	1	99720			49760	5919	41255	41283	53647	53647					0.15132089050416653
RPFLIHIMS	9	Unmodified	_RPFLIHIMS_					0	0	0		ENSG00000151148|ENST00000342494|UBE3B;nc|ENSG00000151148|Q7Z3V4-2|UBE3B	ENSG00000151148|ENST00000342494|UBE3B	ENSG00000151148|ENST00000342494|UBE3B	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.3169555664062	2	557.315512	1112.61647	1.5566	0.00086754	1.3389	0.00074619	2.8955	0.0016137	557.3163824775255	35.608	1.7447	32.759	32.441	34.186	-2.849					93	34	3	0	0	0	0.56889	1	1221	1221		35.618	2.1027	1	1396800			49761	5536	41256	41284	53648	53648					0.06466672596093304
RPFLNNGK	8	Unmodified	_RPFLNNGK_					0	0	0			REV__tr|A0A7D7A324|A0A7D7A324_9CLOTMethionine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=metGPE=3SV=1	REV__tr|A0A7D7A324|A0A7D7A324_9CLOTMethionine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=metGPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.26861572265625	2	473.266876	944.519199	-0.39425	-0.00018659	3.8293	0.0018123	3.4351	0.0016257	473.2683739832455	44.191	0.85147	41.183	40.793	41.645	-3.0074					35	16	3	0	0	0	0.71369	1	2168	2168		40.573	4.9543	1	366370	+		49762	32565	41257	41285	53649	53649					0.044720267114598755
RPFLNNGK	8	Unmodified	_RPFLNNGK_					0	0	0			REV__tr|A0A7D7A324|A0A7D7A324_9CLOTMethionine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=metGPE=3SV=1	REV__tr|A0A7D7A324|A0A7D7A324_9CLOTMethionine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=metGPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	473.266876	944.519199	0.25357	0.00012001	2.7704	0.0013111	3.0239	0.0014311	473.26780232009645	44.017	1.045	41.307	41.005	42.049	-2.7097	0.061825	-0.00053082	NaN	40.573	34	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84885	+		49763	32565	41257	41285							0.044720267114598755
RPFLVPGL	8	Unmodified	_RPFLVPGL_					0	0	0		ENST00000517417.2_1_5:140891792-140891942:+|nuORF	ENST00000517417.2_1_5:140891792-140891942:+|nuORF	ENST00000517417.2_1_5:140891792-140891942:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	449.7790832519531	2	449.779088	897.543623	2.9918	0.0013456	-3.0013	-0.0013499	-0.009536	-4.2891E-06	449.77757313499694	111.64	1.1333	111.5	111.03	112.16	-0.13961					67	22	4	0	0	0	0.59103	1	10539	10539		65.897	5.6035	1	512060			49764	13055	41258	41286	53650	53650					0.09075286864992904
RPFLVPGL	8	Unmodified	_RPFLVPGL_					0	0	0		ENST00000517417.2_1_5:140891792-140891942:+|nuORF	ENST00000517417.2_1_5:140891792-140891942:+|nuORF	ENST00000517417.2_1_5:140891792-140891942:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	449.7792053222656	2	449.779088	897.543623	1.6671	0.00074983	-1.8127	-0.00081531	-0.14558	-6.5481E-05	449.77816595523103	112.76	1.0815	111.69	111.22	112.3	-1.0753					58	21	3	0	0	0	0.59103	1	8242	8242		65.897	2.919	1	557310			49765	13055	41258	41286	53651	53651					0.09075286864992904
RPFMWRKH	8	Unmodified	_RPFMWRKH_					0	0	0			REV__ENST00000238616.9_1_14:75570678-75573216:-|nuORF	REV__ENST00000238616.9_1_14:75570678-75573216:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	578.8108520507812	2	579.311095	1156.60764	-0.79261	-0.00045917	-0.31472	-0.00018232	-1.1073	-0.00064149	579.3107902540729	62.442	0.8805	58.984	58.475	59.356	-3.4577					34	17	3	0	0	0	0.028476	1	4343	4343		40.573	10.255	1	107080	+		49766	23817	41259	41287	53652	53652					0.0355974375029291
RPFPANPQ	8	Unmodified	_RPFPANPQ_					0	0	0		ENST00000317276.8_1_17:8049996-8050217:-|nuORF	ENST00000317276.8_1_17:8049996-8050217:-|nuORF	ENST00000317276.8_1_17:8049996-8050217:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.2735595703125	2	463.745776	925.477	1.1623	0.00053901	1.5995	0.00074176	2.7618	0.0012808	463.74645759674024	150.39	0.69867	150.39	150.14	150.84	0					23	13	2	0	0	0	0.028476	1	17627	17627		25.45	16.628	1	119660			49767	10354	41260	41288	53653	53653					0.011280513030897055
RPFPGLVI	8	Unmodified	_RPFPGLVI_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	OvCa9_classI_Rep2	2	449.7786865234375	2	449.779088	897.543623	2.9918	0.0013456	-3.0013	-0.0013499	-0.009536	-4.2891E-06	449.77757313499694	111.64	1.1333	111.5	111.03	112.16	-0.13961					67	22	4	0	0	0	0.44269	6	10545	10545;10551;10557;10569;10576;10584		83.287	8.9589	1	512060			49768	9513	41261	41289	53654;53655;53656;53657;53658;53659	53654					0.09075286864992904
RPFPGLVI	8	Unmodified	_RPFPGLVI_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	OvCa9_classI_Rep3	3	449.77960205078125	2	449.779088	897.543623	1.6671	0.00074983	-1.8127	-0.00081531	-0.14558	-6.5481E-05	449.77816595523103	112.76	1.0815	111.69	111.22	112.3	-1.0753					58	21	3	0	0	0	0.44269	4	8254	8248;8254;8267;8288		83.287	20.309	1	557310			49769	9513	41261	41289	53660;53661;53662;53663	53661					0.09075286864992904
RPFPGLVI	8	Unmodified	_RPFPGLVI_					0	0	0		nc|ENSG00000263001|P78347-2|GTF2I;nc|ENSG00000263001|P78347-4|GTF2I;nc|ENSG00000263001|P78347-3|GTF2I;ENSG00000263001|ENST00000573035|GTF2I;ENST00000544802.5_1_7:72593260-72619478:+|nuORF	nc|ENSG00000263001|P78347-2|GTF2I	nc|ENSG00000263001|P78347-2|GTF2I	MULTI-MSMS	OvCa9_classI_Rep4_	4	449.7787780761719	2	449.779088	897.543623	0.94367	0.00042444	-1.0764	-0.00048412	-0.13269	-5.9679E-05	449.7784940373724	113.16	1.22	111.71	111.21	112.43	-1.4461					61	24	3	0	0	0	0.56113	6	10456	10456;10466;10478;10502;10515;10530		71.378	4.6971	1	593990			49770	9513	41261	41289	53664;53665;53666;53667;53668;53669	53664					0.09075286864992904
RPFPLRKTE	9	Unmodified	_RPFPLRKTE_					0	0	0			REV__DNAH17|p.A1577P|1|0.05|ENSG00000187775|chr17:78506794-78506794|C/G|missense_variant	REV__DNAH17|p.A1577P|1|0.05|ENSG00000187775|chr17:78506794-78506794|C/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.8187255859375	2	572.33529	1142.65603	-0.89311	-0.00051116	0.5051	0.00028909	-0.38801	-0.00022207	572.3355904831652	37.415	0.46291	37.415	37.251	37.714	0					15	9	2	0	0	0	0.027462	1	2064	2064		26.693	0	1	194490	+		49771	16311	41262	41290	53670	53670					0.0904051587115191
RPFREALL	8	Unmodified	_RPFREALL_					0	0	0			REV__ENSG00000163794|ENST00000296099|UCN	REV__ENSG00000163794|ENST00000296099|UCN	MULTI-SECPEP	OvCa9_classI_Rep3	3	502.2882080078125	2	501.298176	1000.5818	-1.3962	-0.00069992	1.1598	0.0005814	-0.23644	-0.00011852	501.2981290703869	84.6	0.7279	82.34	81.927	82.655	-2.261					22	14	2	0	0	0	0.028476	1	4952	4952		38.806	0	1	49430	+		49772	20888	41263	41291	53671	53671					0.08153172779668694
RPFSPTLRVL	10	Unmodified	_RPFSPTLRVL_					0	0	0		ENST00000250101.9_1_17:6544469-6545099:+|nuORF	ENST00000250101.9_1_17:6544469-6545099:+|nuORF	ENST00000250101.9_1_17:6544469-6545099:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	593.8594360351562	2	593.358765	1184.70298	-0.36111	-0.00021427	0.55861	0.00033146	0.1975	0.00011719	593.3589065923602	92.018	1.3666	89.475	89.212	90.578	-2.5425					61	26	3	0	0	0	0.45953	1	7978	7978		59.931	5.1545	1	260460			49773	9791	41264	41292	53672	53672					0.11801375422351157
RPFSPTLRVL	10	Unmodified	_RPFSPTLRVL_					0	0	0		ENST00000250101.9_1_17:6544469-6545099:+|nuORF	ENST00000250101.9_1_17:6544469-6545099:+|nuORF	ENST00000250101.9_1_17:6544469-6545099:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	593.358765	1184.70298	3.0774	0.001826	2.7053	0.0016052	5.7827	0.0034312	593.3620074430444	89.633	0.32815	89.633	89.435	89.763	0	0.084944	0.0024939	NaN	59.931	14	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141640			49774	9791	41264	41292							0.11801375422351157
RPFSPTLRVL	10	Unmodified	_RPFSPTLRVL_					0	0	0		ENST00000250101.9_1_17:6544469-6545099:+|nuORF	ENST00000250101.9_1_17:6544469-6545099:+|nuORF	ENST00000250101.9_1_17:6544469-6545099:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	593.358765	1184.70298	-1.0102	-0.00059941	0.56815	0.00033711	-0.44206	-0.0002623	593.3590434663523	91.561	0.94912	89.536	89.231	90.18	-2.0241	-0.011766	-4.2288E-05	NaN	59.931	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	324760			49775	9791	41264	41292							0.11801375422351157
RPFTRTGL	8	Unmodified	_RPFTRTGL_					0	0	0		ENST00000480553.1_1_21:47959692-47966956:+|nuORF;ENST00000494435.5_1_21:47924311-47965916:+|nuORF;nc|ENSG00000160305|Q14689-3|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;nc|ENSG00000160305|Q14689-5|DIP2A;nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A	ENST00000480553.1_1_21:47959692-47966956:+|nuORF;ENST00000494435.5_1_21:47924311-47965916:+|nuORF	ENST00000494435.5_1_21:47924311-47965916:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.2757568359375	2	474.274701	946.534849	-0.31465	-0.00014923	0.88484	0.00041966	0.5702	0.00027043	474.27486541235845	53.715	1.7921	50.468	50.058	51.85	-3.2474					77	34	4	0	0	0	0.70469	1	3287	3287		42.396	1.618	1	339520			49776	12533;6057	41265	41293	53673	53673					0.05944313228530973
RPFTRTGL	8	Unmodified	_RPFTRTGL_					0	0	0		ENST00000480553.1_1_21:47959692-47966956:+|nuORF;ENST00000494435.5_1_21:47924311-47965916:+|nuORF;nc|ENSG00000160305|Q14689-3|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;nc|ENSG00000160305|Q14689-5|DIP2A;nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A	ENST00000480553.1_1_21:47959692-47966956:+|nuORF;ENST00000494435.5_1_21:47924311-47965916:+|nuORF	ENST00000494435.5_1_21:47924311-47965916:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	474.274701	946.534849	-1.2632	-0.00059912	1.475	0.00069956	0.21179	0.00010045	474.2751439554831	53.372	1.4385	50.558	49.936	51.375	-2.8139	0.045101	0.00020745	NaN	42.396	58	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123680			49777	12533;6057	41265	41293							0.05944313228530973
RPFVSQKLR	9	Unmodified	_RPFVSQKLR_					0	0	0		ENSG00000213903|ENST00000345363|LTB4R	ENSG00000213903|ENST00000345363|LTB4R	ENSG00000213903|ENST00000345363|LTB4R	MULTI-MSMS	OvCa99_classI_Rep5	1	565.8440551757812	2	565.843282	1129.67201	2.4821	0.0014045	0.072029	4.0757E-05	2.5542	0.0014453	565.8432015123773	95.24	0.50253	95.24	94.949	95.451	0					29	11	3	0	0	0	0.35444	1	10400	10400		56.721	1.2168	1	1024700			49778	9155	41266	41294	53674	53674					0.1123622210807298
RPFYRVLQV	9	Unmodified	_RPFYRVLQV_					0	0	0		ENSG00000101638|ENST00000315087|ST8SIA5;nc|ENSG00000101638|O15466-2|ST8SIA5	ENSG00000101638|ENST00000315087|ST8SIA5	ENSG00000101638|ENST00000315087|ST8SIA5	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3431396484375	2	589.345658	1176.67676	-2.1868	-0.0012888	-2.4431	-0.0014398	-4.6299	-0.0027286	589.3441619466173	148.26	4.549	146.82	145.53	150.08	-1.435					304	95	6	0	0	0	0.70177	1	14883	14883		17.365	0.89182	1	385010			49779	2191	41267	41295	53675	53675					0.09549106250847217
RPGAFKAEL	9	Unmodified	_RPGAFKAEL_					0	0	0		ENSG00000074842|ENST00000262947|MYDGF	ENSG00000074842|ENST00000262947|MYDGF	ENSG00000074842|ENST00000262947|MYDGF	MULTI-MSMS	OvCa9_classI_Rep2	2	494.78192138671875	2	494.782359	987.550165	-1.0978	-0.00054319	0.84812	0.00041963	-0.24972	-0.00012356	494.7826271232193	61.627	1.8441	58.867	58.04	59.884	-2.7593					92	35	4	0	0	0	0.33652	1	4585	4585		58.782	5.4305	1	363280			49780	1519	41268	41296	53676	53676					0.05589180025708629
RPGAFKAEL	9	Unmodified	_RPGAFKAEL_					0	0	0		ENSG00000074842|ENST00000262947|MYDGF	ENSG00000074842|ENST00000262947|MYDGF	ENSG00000074842|ENST00000262947|MYDGF	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.7830810546875	2	494.782359	987.550165	-0.19248	-9.5234E-05	-0.28936	-0.00014317	-0.48184	-0.0002384	494.78217265714096	62.558	1.6035	59.101	58.57	60.174	-3.4577					69	32	4	0	0	0	0.37135	1	4342	4342		54.776	5.3348	1	509620			49781	1519	41268	41296	53677	53677					0.05589180025708629
RPGALARPPF	10	Unmodified	_RPGALARPPF_					0	0	0			REV__ENST00000498154.5_1_3:71630834-71631062:-|nuORF	REV__ENST00000498154.5_1_3:71630834-71631062:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.3463745117188	2	541.3169	1080.61925	-0.46809	-0.00025339	1.6717	0.00090493	1.2036	0.00065154	541.3176986295944	82.668	0.14735	80.372	80.283	80.431	-2.2963					4	2	2	0	0	0	0.026635	1	4668	4668		47.657	0	1	8840.3	+		49782	26789	41269	41297	53678	53678					0.08216264045267963
RPGALFPSL	9	Unmodified	_RPGALFPSL_					0	0	0			REV__ENSG00000206262|ENST00000383165|FOXL2NB	REV__ENSG00000206262|ENST00000383165|FOXL2NB	MULTI-MSMS	OvCa9_classI_Rep2	2	479.2771301269531	2	479.279452	956.544351	-1.3781	-0.00066051	-2.7764	-0.0013307	-4.1545	-0.0019912	479.2778548190663	50.558	1.983	47.764	47.232	49.215	-2.794					76	39	3	0	0	0	0.62352	1	3264	3264		29.15	2.3535	1	369850	+		49783	23237	41270	41298	53679	53679					0.0643408151404401
RPGANSSLRR	10	Unmodified	_RPGANSSLRR_					0	0	0			REV__ENST00000294072.8_2_11:61117452-61117836:-|nuORF	REV__ENST00000294072.8_2_11:61117452-61117836:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.3173217773438	2	557.31542	1112.61629	1.5566	0.00086754	1.503	0.00083765	3.0597	0.0017052	557.3163824775255	35.608	1.7447	32.759	32.441	34.186	-2.849					93	34	3	0	0	0	0.47142	2	1147	1138;1147		58.23	5.5634	1	1396800	+		49784	24179	41271	41299	53680;53681	53681					0.06448388920466641
RPGDRAKAL	9	Unmodified	_RPGDRAKAL_					0	0	0		nc|ENSG00000142733|O95382-3|MAP3K6;ENSG00000142733|ENST00000357582|MAP3K6;MAP3K6|p.P340Lfs*6|1|0.07|ENSG00000142733|chr1:27362974-27362975|-/A|frameshift_variant;nc|ENSG00000142733|O95382-2|MAP3K6	nc|ENSG00000142733|O95382-3|MAP3K6	nc|ENSG00000142733|O95382-3|MAP3K6	MULTI-MSMS	OvCa9_classI_Rep2	2	492.29010009765625	2	492.290882	982.567212	-1.3787	-0.00067874	1.1745	0.00057819	-0.20425	-0.00010055	492.2912275187481	35.09	1.142	32.381	32.158	33.3	-2.7097					49	22	4	0	0	0	0.38969	1	1392	1392		52.937	3.4952	1	210830			49785	4994	41272	41300	53682	53682					0.07523100631499346
RPGDRAKAL	9	Unmodified	_RPGDRAKAL_					0	0	0		nc|ENSG00000142733|O95382-3|MAP3K6;ENSG00000142733|ENST00000357582|MAP3K6;MAP3K6|p.P340Lfs*6|1|0.07|ENSG00000142733|chr1:27362974-27362975|-/A|frameshift_variant;nc|ENSG00000142733|O95382-2|MAP3K6	nc|ENSG00000142733|O95382-3|MAP3K6	nc|ENSG00000142733|O95382-3|MAP3K6	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.2907409667969	2	492.290882	982.567212	1.0342	0.00050911	-1.3373	-0.00065835	-0.30315	-0.00014924	492.29012268091446	33.667	1.6416	30.879	30.508	32.15	-2.7881					88	32	4	0	0	0	0.1804	2	950	914;950		79.713	30.271	1	677830			49786	4994	41272	41300	53683;53684	53684					0.07523100631499346
RPGEPPLDL	9	Unmodified	_RPGEPPLDL_					0	0	0		ENSG00000124212|ENST00000244043|PTGIS	ENSG00000124212|ENST00000244043|PTGIS	ENSG00000124212|ENST00000244043|PTGIS	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.27362060546875	2	497.271824	992.529095	-2.6084	-0.0012971	1.4574	0.00072474	-1.1509	-0.00057232	497.27241152127726	88.121	1.3594	85.518	84.977	86.336	-2.6027					67	26	3	0	0	0	0.3249	1	7545	7545		60.118	3.3972	1	330200			49787	3634	41273	41301	53685	53685					0.03253169926199462
RPGGLDTLY	9	Unmodified	_RPGGLDTLY_					0	0	0		ENST00000538126.5_1_16:71712656-71757677:-|nuORF;nc|ENSG00000040199|Q6ZVD8-2|PHLPP2;nc|ENSG00000040199|Q6ZVD8-3|PHLPP2;ENSG00000040199|ENST00000568954|PHLPP2	ENST00000538126.5_1_16:71712656-71757677:-|nuORF	ENST00000538126.5_1_16:71712656-71757677:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	496.2626953125	2	496.263999	990.513445	1.8637	0.0009249	1.0785	0.0005352	2.9422	0.0014601	496.2643848501877	59.438	2.028	56.339	55.347	57.375	-3.0993					83	55	2	0	0	0	0.6653	1	1986	1986		24.203	3.7209	1	32593			49788	1110	41274	41302	53686	53686					0.017808834091511017
RPGGLGSSSL	10	Unmodified	_RPGGLGSSSL_					0	0	0		ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729	ENSG00000135480|ENST00000331817|KRT7	ENSG00000135480|ENST00000331817|KRT7	MULTI-MSMS	OvCa9_classI_Rep2	2	465.7525634765625	2	465.753798	929.493044	-0.66211	-0.00030838	0.59578	0.00027749	-0.066328	-3.0893E-05	465.7539083170596	59.929	2.3565	57.159	56.567	58.924	-2.7702					98	44	5	0	0	0	0.09252	3	4408	4408;4414;4420		115.49	19.304	1	1317300		+	49789	646	41275	41303	53687;53688;53689	53687					0.025477127493331864
RPGGLGSSSL	10	Unmodified	_RPGGLGSSSL_					0	0	0		ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729	ENSG00000135480|ENST00000331817|KRT7	ENSG00000135480|ENST00000331817|KRT7	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.7543029785156	2	465.753798	929.493044	0.23003	0.00010714	-0.19879	-9.2588E-05	0.031237	1.4549E-05	465.75350138597	60.501	2.8311	57.071	56.553	59.384	-3.43					108	57	4	0	0	0	0.054313	5	4111	4087;4099;4111;4147;4159		127.46	16.231	1	6166000		+	49790	646	41275	41303	53690;53691;53692;53693;53694	53692					0.025477127493331864
RPGGLRIRS	9	Unmodified	_RPGGLRIRS_					0	0	0			REV__ENST00000608477.1_1_7:128170420-128171047:-|nuORF	REV__ENST00000608477.1_1_7:128170420-128171047:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	506.3119812011719	2	506.312149	1010.60975	-2.3314	-0.0011804	2.219	0.0011235	-0.11233	-5.6875E-05	506.3130527025525	35.126	0.94359	32.416	32.158	33.102	-2.7097					40	18	3	0	0	0	0.40818	1	1398	1398		51.193	1.7511	1	144430	+		49791	28096	41276	41304	53695	53695					0.10486495759732861
RPGGMGCLGRL	11	Unmodified	_RPGGMGCLGRL_					0	0	0			REV__ENST00000480913.5_1_6:31695016-31697893:-|nuORF	REV__ENST00000480913.5_1_6:31695016-31697893:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	558.3502197265625	2	558.791878	1115.5692	0.91381	0.00051063	-0.28742	-0.00016061	0.62639	0.00035002	558.7920952264249	81.467	1.5338	79.818	79.114	80.648	-1.6485					61	29	3	0	0	0	0.025257	1	7006	7006		44.377	12.847	1	88935	+		49792	23269	41277	41305	53696	53696					0.016040700534858843
RPGGRGDRSRL	11	Unmodified	_RPGGRGDRSRL_					0	0	0			REV__ENST00000493939.1_1_22:39096606-39096871:-|nuORF	REV__ENST00000493939.1_1_22:39096606-39096871:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	613.8441772460938	2	613.844876	1225.6752	-1.3186	-0.00080939	3.2527	0.0019966	1.9341	0.0011872	613.846862023676	60.404	2.094	57.633	57.032	59.126	-2.7702					128	39	6	0	0	0	0.52842	1	4444	4444		51.193	1.6567	1	1043300	+		49793	26716	41278	41306	53697	53697					0.07138865214801626
RPGGRLLAT	9	Unmodified	_RPGGRLLAT_					0	0	0		ENSG00000143384|ENST00000369026|MCL1;nc|ENSG00000143384|Q07820-2|MCL1;MCL1-CTSS|2|fusion;MCL1-CTSS|1|fusion	ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.7881774902344	2	470.787976	939.561398	-0.18553	-8.7345E-05	-1.1363	-0.00053496	-1.3218	-0.00062231	470.78744487463723	40.717	3.4773	37.763	37.112	40.589	-2.9541					147	66	5	0	0	0	0.59259	1	1777	1777		32.812	0.85756	1	6500500			49794	5047	41279	41307	53698	53698					0.08920002119862147
RPGGSRFIMAE	11	Unmodified	_RPGGSRFIMAE_					0	0	0			REV__SEMA3G|p.V722Kfs*11|1|0.31|ENSG00000010319|chr3:52435789-52435790|-/AAGTCGGTCAGGTAGGCTCTTCTTA|frameshift_variant	REV__SEMA3G|p.V722Kfs*11|1|0.31|ENSG00000010319|chr3:52435789-52435790|-/AAGTCGGTCAGGTAGGCTCTTCTTA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	610.8180541992188	2	610.813864	1219.61318	0.4134	0.00025251	3.883	0.0023718	4.2964	0.0026243	610.8160963482944	47.828	1.9509	44.72	44.384	46.335	-3.1077					98	37	4	0	0	0	0.69099	1	2594	2594		32.751	3.5805	1	447190	+		49795	16478	41280	41308	53699	53699					0.012153777514186004
RPGHLLPAP	9	Unmodified	_RPGHLLPAP_					0	0	0		ENST00000493449.5_1_16:322367-324481:-|nuORF	ENST00000493449.5_1_16:322367-324481:-|nuORF	ENST00000493449.5_1_16:322367-324481:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.3201599121094	2	479.285069	956.555585	-1.187	-0.00056893	4.1421	0.0019853	2.9551	0.0014163	479.286690957613	100.73	2.4785	99.915	99.033	101.51	-0.81115					62	49	2	0	0	0	0.027456	1	9241	9241		47.916	0	1	130990			49796	12737	41281	41309	53700	53700					0.075569036081788
RPGIMIQQPH	10	Unmodified	_RPGIMIQQPH_					0	0	0			REV__ENSG00000148948|ENST00000528697|LRRC4C	REV__ENSG00000148948|ENST00000528697|LRRC4C	MULTI-MSMS	OvCa9_classI_Rep3	3	588.8185424804688	2	588.81895	1175.62335	-1.244	-0.00073247	1.0615	0.00062501	-0.1825	-0.00010746	588.8196084801616	72.446	2.1291	69.844	69.376	71.505	-2.6023					122	42	4	0	0	0	0.45225	1	3451	3451		60.972	8.0352	1	1640900	+		49797	20138	41282	41310	53701	53701					0.042559854766750504
RPGKVQVR	8	Unmodified	_RPGKVQVR_					0	0	0		ENST00000372625.7_1_X:102883928-102884824:+|nuORF	ENST00000372625.7_1_X:102883928-102884824:+|nuORF	ENST00000372625.7_1_X:102883928-102884824:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	470.29583740234375	2	470.295968	938.577383	-0.49251	-0.00023162	-0.04838	-2.2753E-05	-0.54089	-0.00025438	470.29591238963496	32.315	1.7376	29.606	29.382	31.119	-2.7097					90	34	5	0	0	0	0.74971	1	1077	1077		26.796	3.7536	1	1326000			49798	10983	41283	41311	53702	53702					0.10563708356744428
RPGLAKKFLPW	11	Unmodified	_RPGLAKKFLPW_					0	0	0		ENSG00000111252|ENST00000341259|SH2B3	ENSG00000111252|ENST00000341259|SH2B3	ENSG00000111252|ENST00000341259|SH2B3	MULTI-MSMS	OvCa9_classI_Rep3	3	438.2695007324219	3	438.267797	1311.78156	1.3234	0.00058001	2.829	0.0012399	4.1524	0.0018199	438.268916587827	66.948	1.2099	64.06	63.78	64.99	-2.8873					52	23	3	0	0	0	0.72472	1	2804	2804		19.263	1.4295	1	94061			49799	2816	41284	41312	53703	53703					0.13814227727402795
RPGLPTRV	8	Unmodified	_RPGLPTRV_					0	0	0			REV__ENSG00000087365|ENST00000322535|SF3B2	REV__ENSG00000087365|ENST00000322535|SF3B2	MULTI-MSMS	OvCa9_classI_Rep3	3	448.2774658203125	2	448.277244	894.539935	1.0889	0.00048813	-0.80337	-0.00036013	0.28553	0.000128	448.2767184820242	67.307	1.1511	64.42	64.187	65.338	-2.8873					44	22	3	0	0	0	0.67745	1	2840	2840		47.916	7.343	1	85921	+		49800	17166	41285	41313	53704	53704					0.08844617091131113
RPGLPTRV	8	Unmodified	_RPGLPTRV_					0	0	0			REV__ENSG00000087365|ENST00000322535|SF3B2	REV__ENSG00000087365|ENST00000322535|SF3B2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	448.277244	894.539935	2.169	0.00097233	-2.4097	-0.0010802	-0.24063	-0.00010787	448.2761354631549	67.128	1.2858	64.467	64.049	65.335	-2.661	0.02349	-0.00079578	NaN	47.916	68	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92655	+		49801	17166	41285	41313							0.08844617091131113
RPGLRGEL	8	Unmodified	_RPGLRGEL_					0	0	0			REV__ENST00000539719.5_1_1:33765092-33765314:+|nuORF	REV__ENST00000539719.5_1_1:33765092-33765314:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	449.268310546875	2	449.266876	896.519199	3.2258	0.0014492	1.1164	0.00050155	4.3422	0.0019508	449.26732371902864	112.43	2.5171	112.3	111.93	114.45	-0.12174					121	50	4	0	0	0	0.7224	1	10691	10691		38.806	1.647	1	1472600	+		49802	27338	41286	41314	53705	53705					0.06680026711467235
RPGLRQLLL	9	Unmodified	_RPGLRQLLL_					0	0	0		ENST00000416512.1_1_1:32827457-32827634:-|nuORF	ENST00000416512.1_1_1:32827457-32827634:-|nuORF	ENST00000416512.1_1_1:32827457-32827634:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	533.3473510742188	2	533.3482	1064.68185	-0.61869	-0.00032998	-0.032112	-1.7127E-05	-0.65081	-0.00034711	533.348160054999	92.553	1.6565	91.385	91.024	92.68	-1.168					102	31	5	0	0	0	0.46377	2	8254	8242;8254		45.952	3.4775	1	1110800			49803	11605	41287	41315	53706;53707	53707					0.15209410113470767
RPGLRQLLL	9	Unmodified	_RPGLRQLLL_					0	0	0		ENST00000416512.1_1_1:32827457-32827634:-|nuORF	ENST00000416512.1_1_1:32827457-32827634:-|nuORF	ENST00000416512.1_1_1:32827457-32827634:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	533.3489990234375	2	533.3482	1064.68185	-0.32178	-0.00017162	-0.064184	-3.4232E-05	-0.38596	-0.00020585	533.3481150232365	93.925	1.7195	91.964	91.577	93.296	-1.9617					119	33	5	0	0	0	0.21395	5	6036	6023;6036;6041;6071;6092		73.975	15.791	1	1484200			49804	11605	41287	41315	53708;53709;53710;53711;53712	53709					0.15209410113470767
RPGLRQLLL	9	Unmodified	_RPGLRQLLL_					0	0	0		ENST00000416512.1_1_1:32827457-32827634:-|nuORF	ENST00000416512.1_1_1:32827457-32827634:-|nuORF	ENST00000416512.1_1_1:32827457-32827634:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.3491821289062	2	533.3482	1064.68185	-1.4271	-0.00076117	0.86138	0.00045942	-0.56576	-0.00030175	533.3485712368183	94.648	1.5521	92.18	91.811	93.363	-2.4685					99	30	4	0	0	0	0.36502	3	8284	8284;8330;8357		55.504	6.9577	1	1202000			49805	11605	41287	41315	53713;53714;53715	53713					0.15209410113470767
RPGLRTTI	8	Unmodified	_RPGLRTTI_					0	0	0		nc|ENSG00000150551|Q8N2G4-4|LYPD1;ENSG00000150551|ENST00000397463|LYPD1;nc|ENSG00000150551|Q8N2G4-3|LYPD1;nc|ENSG00000150551|Q8N2G4-2|LYPD1	nc|ENSG00000150551|Q8N2G4-4|LYPD1	nc|ENSG00000150551|Q8N2G4-4|LYPD1	MULTI-MSMS	OvCa9_classI_Rep2	2	457.28240966796875	2	457.282526	912.550499	0.47425	0.00021687	-0.49128	-0.00022466	-0.017036	-7.7904E-06	457.2821592199895	58.808	2.4649	56.028	55.184	57.649	-2.7801					125	47	5	0	0	0	0.74229	1	4283	4283		30.504	5.0535	1	550990			49806	5510	41288	41316	53716	53716					0.09072599745559273
RPGLSRSKWA	10	Unmodified	_RPGLSRSKWA_					0	0	0		ENST00000452863.7_1_11:32456662-32456743:-|nuORF	ENST00000452863.7_1_11:32456662-32456743:-|nuORF	ENST00000452863.7_1_11:32456662-32456743:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.3312377929688	2	579.330539	1156.64652	0.14566	8.4385E-05	-0.31631	-0.00018325	-0.17065	-9.8863E-05	579.3301885969958	33.591	1.538	30.802	30.209	31.747	-2.7881					60	30	3	0	0	0	0.72319	1	917	917		27.882	3.3631	1	75593			49807	12059	41289	41317	53717	53717					0.07446747585663616
RPGMDGSL	8	Unmodified	_RPGMDGSL_					0	0	0			REV__ENST00000586522.5_1_17:40255624-40263910:-|nuORF	REV__ENST00000586522.5_1_17:40255624-40263910:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	416.2439880371094	2	416.70272	831.390887	0.82964	0.00034571	0.21936	9.1408E-05	1.049	0.00043712	416.702743543468	71.838	0.45619	71.838	71.589	72.045	0					15	10	2	0	0	0	0.028476	1	6991	6991		11.511	0	1	438960	+		49808	17901	41290	41318	53718	53718					-0.03155276593929557
RPGPASILPH	10	Unmodified	_RPGPASILPH_					0	0	0		OVGP1|p.G202Efs*13|1|0.03|ENSG00000085465|chr1:111422930-111422931|-/T|frameshift_variant;OVGP1|p.K271Qfs*4|1|0.41|ENSG00000085465|chr1:111421369-111421370|-/A|frameshift_variant;ENSG00000085465|ENST00000369732|OVGP1	OVGP1|p.G202Efs*13|1|0.03|ENSG00000085465|chr1:111422930-111422931|-/T|frameshift_variant	OVGP1|p.G202Efs*13|1|0.03|ENSG00000085465|chr1:111422930-111422931|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	522.8008422851562	2	522.801083	1043.58761	-0.60564	-0.00031663	0.2391	0.000125	-0.36654	-0.00019163	522.8010421976496	33.203	1.3901	30.493	30.272	31.662	-2.7097					70	27	4	0	0	0	0.5675	1	1155	1155		45.972	5.1941	1	560900			49809	1731	41291	41319	53719	53719					0.0675627129132863
RPGPIVPPAYG	11	Unmodified	_RPGPIVPPAYG_					0	0	0		TRIT1|p.V344A|1|0.05|ENSG00000043514|chr1:39844616-39844616|A/G|missense_variant	TRIT1|p.V344A|1|0.05|ENSG00000043514|chr1:39844616-39844616|A/G|missense_variant	TRIT1|p.V344A|1|0.05|ENSG00000043514|chr1:39844616-39844616|A/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.3283081054688	2	562.316566	1122.61858	2.5874	0.0014549	0.7123	0.00040054	3.2997	0.0018555	562.3157937885904	76.712	0.39793	76.712	76.443	76.841	0					13	9	2	0	0	0	0.025611	1	7708	7708		27.882	3.6795	1	430140			49810	36281	41292	41320	53720	53720					0.06217424605551969
RPGPLLLLPL	10	Unmodified	_RPGPLLLLPL_					0	0	0			REV__ENST00000413209.6_1_22:30090794-30090923:+|nuORF	REV__ENST00000413209.6_1_22:30090794-30090923:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	544.863525390625	2	544.863152	1087.71175	-1.2614	-0.00068732	1.0938	0.00059598	-0.16763	-9.1336E-05	544.8636084956992	139.58	0.98232	139.36	139.11	140.09	-0.22696					40	19	3	0	0	0	0.65434	1	13938	13938		35.618	0	1	70566	+		49811	25506	41293	41321	53721	53721					0.1714034905880908
RPGPLLLLPL	10	Unmodified	_RPGPLLLLPL_					0	0	0			REV__ENST00000413209.6_1_22:30090794-30090923:+|nuORF	REV__ENST00000413209.6_1_22:30090794-30090923:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.8641357421875	2	544.863152	1087.71175	0.15544	8.4692E-05	-0.26193	-0.00014271	-0.10649	-5.8022E-05	544.8628457057445	141.22	1.1476	139.75	139.4	140.55	-1.4627					47	21	3	0	0	0	0.72319	1	13778	13778		27.882	3.6795	1	95949	+		49812	25506	41293	41321	53722	53722					0.1714034905880908
RPGPPPPPP	9	Unmodified	_RPGPPPPPP_					0	0	0			REV__ENSG00000269855|ENST00000601382|RNF225	REV__ENSG00000269855|ENST00000601382|RNF225	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.25848388671875	2	456.25852	910.502486	-0.95681	-0.00043655	0.87418	0.00039885	-0.082633	-3.7702E-05	456.25875650816954	50.795	1.4926	47.621	46.631	48.123	-3.1734					79	28	3	0	0	0	0.27546	2	2920	2920;2931		65.803	0	1	346610	+		49813	23602	41294	41322	53723;53724	53723					0.04365525825505756
RPGPQLQPFH	10	Unmodified	_RPGPQLQPFH_					0	0	0			REV__ENST00000459850.5_1_9:139905636-139906175:-|nuORF	REV__ENST00000459850.5_1_9:139905636-139906175:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	588.8187866210938	2	588.817264	1175.61998	-0.11755	-6.9214E-05	2.8075	0.0016531	2.69	0.0015839	588.8188542391886	72.228	2.0928	69.721	69.381	71.473	-2.5071					108	39	4	0	0	0	0.45225	1	5842	5842		60.972	4.2509	1	1112400	+		49814	24637	41295	41323	53725	53725					0.03919058694305022
RPGPQLQPFH	10	Unmodified	_RPGPQLQPFH_					0	0	0			REV__ENST00000459850.5_1_9:139905636-139906175:-|nuORF	REV__ENST00000459850.5_1_9:139905636-139906175:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	588.8198852539062	2	588.817264	1175.61998	-1.244	-0.00073247	3.9238	0.0023104	2.6799	0.0015779	588.8196084801616	72.446	2.1291	69.844	69.376	71.505	-2.6023					122	42	4	0	0	0	0.45225	1	3477	3477		60.972	0.85368	1	1640900	+		49815	24637	41295	41323	53726	53726					0.03919058694305022
RPGPRQHKL	9	Unmodified	_RPGPRQHKL_					0	0	0			REV__chr19:49663514-49664339|274|15.88|0.09|7.42|-|1|IRF3,None|1	REV__chr19:49663514-49664339|274|15.88|0.09|7.42|-|1|IRF3,None|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.823974609375	2	544.825424	1087.63629	-5.1365	-0.0027985	3.6577	0.0019928	-1.4788	-0.00080569	544.8273952320496	155.45	0.90656	153.96	153.69	154.6	-1.4911					53	25	3	0	0	0	0.70177	1	15411	15411		17.365	0.89182	1	111000	+		49816	15980	41296	41324	53727	53727					0.09598184651076735
RPGPRRPQK	9	Unmodified	_RPGPRRPQK_					0	0	0		ENST00000422871.5_2_22:44577652-44577763:+|nuORF	ENST00000422871.5_2_22:44577652-44577763:+|nuORF	ENST00000422871.5_2_22:44577652-44577763:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	546.331787109375	2	546.330873	1090.64719	-2.6411	-0.0014429	2.3987	0.0013105	-0.24246	-0.00013246	546.3320576477423	36.639	1.8723	33.93	33.647	35.519	-2.7097					83	37	3	0	0	0	0.53957	2	1632	1590;1632		38.806	4.1723	1	180730			49817	11700	41297	41325	53728;53729	53729					0.10549587025343499
RPGPTPRPA	9	Unmodified	_RPGPTPRPA_					0	0	0			REV__ENSG00000237172|ENST00000449549|B3GNT9	REV__ENSG00000237172|ENST00000449549|B3GNT9	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.7724914550781	2	474.772326	947.530098	1.4458	0.0006864	-1.8304	-0.00086903	-0.38467	-0.00018263	474.7714054184023	37.259	2.3363	34.367	33.695	36.031	-2.8925					116	46	4	0	0	0	0.33652	1	1393	1393		58.782	1.3293	1	1197600	+		49818	23416	41298	41326	53730	53730					0.05423429085749376
RPGRFHRQ	8	Unmodified	_RPGRFHRQ_					0	0	0		ENST00000557444.5_1_16:90057772-90063225:+|nuORF;ENST00000457926.5_1_16:90059154-90061249:+|nuORF	ENST00000557444.5_1_16:90057772-90063225:+|nuORF	ENST00000557444.5_1_16:90057772-90063225:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.7885131835938	2	527.294291	1052.57403	0.1293	6.818E-05	-2.4111	-0.0012713	-2.2818	-0.0012032	527.2930039133325	37.423	0.99648	34.53	34.293	35.289	-2.8925					34	19	2	0	0	0	0.73626	1	1373	1373		33.516	1.5607	1	220590			49819	12134	41299	41327	53731	53731					0.049844583027379485
RPGRFHRQ	8	Unmodified	_RPGRFHRQ_					0	0	0		ENST00000557444.5_1_16:90057772-90063225:+|nuORF;ENST00000457926.5_1_16:90059154-90061249:+|nuORF	ENST00000557444.5_1_16:90057772-90063225:+|nuORF	ENST00000557444.5_1_16:90057772-90063225:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	527.294291	1052.57403	-2.3848	-0.0012575	0.1145	6.0376E-05	-2.2703	-0.0011971	527.2942964175979	37.515	0.5893	34.805	34.633	35.222	-2.7097	0.13743	0.0017575	NaN	33.516	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77435			49820	12134	41299	41327							0.049844583027379485
RPGRHAVCIS	10	Unmodified	_RPGRHAVCIS_					0	0	0			REV__nc|ENSG00000116698|Q92540-4|SMG7	REV__nc|ENSG00000116698|Q92540-4|SMG7	MULTI-MSMS	OvCa9_classI_Rep2	2	548.2955322265625	2	548.295642	1094.57673	-1.4493	-0.00079464	0.96638	0.00052986	-0.48291	-0.00026478	548.2961982412694	34.285	4.3001	31.575	31.119	35.419	-2.7097					197	86	6	0	0	0	0.5675	1	1311	1311		45.972	7.1661	1	2359300	+		49821	28813	41300	41328	53732	53732					0.03322545645391983
RPGRHAVCIS	10	Unmodified	_RPGRHAVCIS_					0	0	0			REV__nc|ENSG00000116698|Q92540-4|SMG7	REV__nc|ENSG00000116698|Q92540-4|SMG7	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.2954711914062	2	548.295642	1094.57673	0.52053	0.00028541	-1.6457	-0.00090234	-1.1252	-0.00061693	548.2950889669573	33.486	4.8857	30.698	30.11	34.996	-2.7881					278	97	6	0	0	0	0.5675	2	973	973;1045		45.972	7.3079	1	7055400	+		49822	28813	41300	41328	53733;53734	53733					0.03322545645391983
RPGRILPNL	9	Unmodified	_RPGRILPNL_					0	0	0			REV__nc|ENSG00000175854|Q1ZZU3|SWI5	REV__nc|ENSG00000175854|Q1ZZU3|SWI5	MULTI-MSMS	OvCa9_classI_Rep2	2	518.3250732421875	2	518.324725	1034.6349	-0.20131	-0.00010434	-0.59303	-0.00030738	-0.79433	-0.00041172	518.3244380054447	69.411	2.6973	66.791	66.416	69.113	-2.6203					144	52	4	0	0	0	0.46377	1	5543	5543		45.952	0	1	2532100	+		49823	29018	41301	41329	53735	53735					0.11896550562300945
RPGRKLLLS	9	Unmodified	_RPGRKLLLS_					0	0	0		nc|ENSG00000196943|Q86U38-2|NOP9	nc|ENSG00000196943|Q86U38-2|NOP9	nc|ENSG00000196943|Q86U38-2|NOP9	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3406372070312	2	520.340375	1038.6662	-0.11114	-5.783E-05	-0.1677	-8.7261E-05	-0.27884	-0.00014509	520.3401542748645	39.812	1.4362	37.102	36.805	38.241	-2.7097					67	28	4	0	0	0	0.5811	2	1965	1965;1992		34.173	1.3601	1	306910			49824	15247	41302	41330	53736;53737	53736					0.14841123596420402
RPGRPAAWGL	10	Unmodified	_RPGRPAAWGL_					0	0	0			REV__ABCC10|p.G193R|1|0.46|ENSG00000124574|chr6:43432557-43432557|G/C|missense_variant	REV__ABCC10|p.G193R|1|0.46|ENSG00000124574|chr6:43432557-43432557|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.8050537109375	2	540.8067	1079.59885	0.050459	2.7288E-05	-3.4892	-0.001887	-3.4388	-0.0018597	540.8047771597005	33.339	1.6874	30.644	30.352	32.039	-2.6954					106	33	4	0	0	0	0.65434	1	927	927		35.618	5.1146	1	998350	+		49825	15551	41303	41331	53738	53738					0.06223093385460743
RPGRPINHS	9	Unmodified	_RPGRPINHS_					0	0	0		ENST00000413684.1_1_2:91935968-91936997:-|nuORF	ENST00000413684.1_1_2:91935968-91936997:-|nuORF	ENST00000413684.1_1_2:91935968-91936997:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.3115234375	2	517.286131	1032.55771	-0.26995	-0.00013964	-1.4866	-0.000769	-1.7566	-0.00090864	517.2848380705469	82.218	0.65152	79.922	79.584	80.235	-2.2963					13	12	2	0	0	0	0.027462	1	4628	4628		34.173	0	1	27954			49826	11566	41304	41332	53739	53739					0.04273332345974268
RPGRPPPPP	9	Unmodified	_RPGRPPPPP_					0	0	0			REV__ENST00000434837.7_1_6:37664592-37664970:-|nuORF	REV__ENST00000434837.7_1_6:37664592-37664970:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.78216552734375	2	485.782693	969.550834	-0.88197	-0.00042845	-0.45458	-0.00022083	-1.3366	-0.00064927	485.78245215486993	41.493	1.5954	38.512	38.023	39.618	-2.9804					80	30	4	0	0	0	0.50066	1	1858	1858		42.474	0	1	157170	+		49827	25762	41305	41333	53740	53740					0.0648401946540389
RPGRPPPPP	9	Unmodified	_RPGRPPPPP_					0	0	0			REV__ENST00000434837.7_1_6:37664592-37664970:-|nuORF	REV__ENST00000434837.7_1_6:37664592-37664970:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	485.782693	969.550834	0.65935	0.0003203	-1.5434	-0.00074978	-0.8841	-0.00042948	485.78210869118675	41.172	1.1327	38.462	38.142	39.275	-2.7097	-0.025275	-0.00075376	NaN	42.474	43	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30769	+		49828	25762	41305	41333							0.0648401946540389
RPGSPKVTN	9	Unmodified	_RPGSPKVTN_					0	0	0		ENST00000444986.1_1_6:28864339-28864980:+|nuORF	ENST00000444986.1_1_6:28864339-28864980:+|nuORF	ENST00000444986.1_1_6:28864339-28864980:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.7639465332031	2	478.269616	954.524678	-0.73041	-0.00034933	-0.44612	-0.00021337	-1.1765	-0.0005627	478.26847123438466	45.8	0.36601	42.762	42.595	42.961	-3.0385					9	6	2	0	0	0	0.027462	1	2373	2373		49.442	10.189	1	21339			49829	11966	41306	41334	53741	53741					0.04559705503265832
RPGSSTCFW	9	Unmodified	_RPGSSTCFW_					0	0	0		ENST00000575500.5_2_17:78178032-78182141:+|nuORF	ENST00000575500.5_2_17:78178032-78182141:+|nuORF	ENST00000575500.5_2_17:78178032-78182141:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.8438110351562	2	520.734551	1039.45455	0.12093	6.2973E-05	2.2548	0.0011742	2.3757	0.0012371	521.2375129691217	103.38	0.47433	101.95	101.71	102.18	-1.4347					12	8	2	0	0	0	0.027462	1	7151	7151		37.159	0	1	15666			49830	13940	41307	41335	53742	53742					-0.06359916156839063
RPGTALACFF	10	Unmodified	_RPGTALACFF_					0	0	0		ENST00000326391.6_1_7:44054045-44058742:-|nuORF	ENST00000326391.6_1_7:44054045-44058742:-|nuORF	ENST00000326391.6_1_7:44054045-44058742:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.7733154296875	2	541.776219	1081.53789	-1.6488	-0.00089328	-1.9508	-0.0010569	-3.5996	-0.0019502	541.7749832419817	42.677	0.51951	39.697	39.361	39.88	-2.9804					22	9	3	0	0	0	0.64063	1	1997	1997		37.159	3.6435	1	221190			49831	10407	41308	41336	53743	53743					0.0003782029100420914
RPGTQMVRTF	10	Unmodified	_RPGTQMVRTF_					0	0	0		nc|ENSG00000060749|Q2KHR3-2|QSER1;nc|ENSG00000060749|Q2KHR3|QSER1;ENSG00000060749|ENST00000650167|QSER1	nc|ENSG00000060749|Q2KHR3-2|QSER1	nc|ENSG00000060749|Q2KHR3-2|QSER1	MULTI-MSMS	OvCa9_classI_Rep4_	4	596.819091796875	2	596.816407	1191.61826	-0.18377	-0.00010967	-0.2095	-0.00012503	-0.39327	-0.00023471	596.8162215131191	55.836	1.824	52.541	51.906	53.73	-3.2944					104	35	4	0	0	0	0.50873	1	3536	3536		53.089	10.693	1	1109000			49832	1266	41309	41337	53744	53744					0.03011681614043482
RPGVFEVYI	9	Unmodified	_RPGVFEVYI_					0	0	0			REV__ENSG00000198300|ENST00000326441|PEG3	REV__ENSG00000198300|ENST00000326441|PEG3	MULTI-MSMS	OvCa9_classI_Rep2	2	540.2981567382812	2	540.297842	1078.58113	-1.8908	-0.0010216	2.144	0.0011584	0.25319	0.0001368	540.2989536670705	38.535	2.9688	35.825	35.469	38.438	-2.7097					158	59	5	0	0	0	0.59983	1	1869	1869		31.955	1.6371	1	1380400	+		49833	23008	41310	41338	53745	53745					0.04498333339938654
RPGVFEVYI	9	Unmodified	_RPGVFEVYI_					0	0	0			REV__ENSG00000198300|ENST00000326441|PEG3	REV__ENSG00000198300|ENST00000326441|PEG3	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.2985229492188	2	540.297842	1078.58113	-0.33982	-0.0001836	-0.013127	-7.0923E-06	-0.35295	-0.0001907	540.2979670747679	38.277	3.0652	35.351	34.907	37.972	-2.9264					190	60	5	0	0	0	0.44294	3	1589	1551;1589;1601		47.916	7.1374	1	3652900	+		49834	23008	41310	41338	53746;53747;53748	53747					0.04498333339938654
RPGVFYIGR	9	Unmodified	_RPGVFYIGR_					0	0	0		nc|ENSG00000162643|Q8IWG1-2|DNAI3;ENSG00000162643|ENST00000294664|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	nc|ENSG00000162643|Q8IWG1-2|DNAI3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.8433227539062	2	532.803626	1063.5927	-2.4699	-0.001316	-0.27745	-0.00014783	-2.7474	-0.0014638	532.8029662535614	87.451	1.41	84.824	84.499	85.909	-2.6269					42	27	2	0	0	0	0.027462	1	7488	7488		27.882	0	1	48303			49835	6210	41311	41339	53749	53749					0.06344575153934784
RPGVIRALGP	10	Unmodified	_RPGVIRALGP_					0	0	0		ENSG00000175592|ENST00000312562|FOSL1	ENSG00000175592|ENST00000312562|FOSL1	ENSG00000175592|ENST00000312562|FOSL1	MULTI-MSMS	OvCa9_classI_Rep2	2	518.3248901367188	2	518.324725	1034.6349	-0.20131	-0.00010434	-0.59303	-0.00030738	-0.79433	-0.00041172	518.3244380054447	69.411	2.6973	66.791	66.416	69.113	-2.6203					144	52	4	0	0	0	0.66721	1	5531	5531		34.173	7.3764	1	2532100			49836	7554	41312	41340	53750	53750					0.11896550562323682
RPGVKLTL	8	Unmodified	_RPGVKLTL_					0	0	0		ENSG00000078668|ENST00000022615|VDAC3;nc|ENSG00000078668|Q9Y277-2|VDAC3;ENST00000604654.1_1_14:100431584-100431647:+|nuORF;nc|ENSG00000165637|P45880-2|VDAC2;ENSG00000165637|ENST00000332211|VDAC2;nc|ENSG00000165637|P45880-1|VDAC2	ENSG00000078668|ENST00000022615|VDAC3	ENSG00000078668|ENST00000022615|VDAC3	MULTI-MSMS	OvCa9_classI_Rep2	2	442.28900146484375	2	442.28982	882.565087	0.34381	0.00015206	0.055024	2.4337E-05	0.39883	0.0001764	442.2896848432352	67.843	0.83738	65.182	64.892	65.729	-2.661					43	16	3	0	0	0	0.40148	3	5327	5321;5327;5333		87.754	17.944	1	333390			49837	1596	41313	41341	53751;53752;53753	53752					0.11910671893701874
RPGVKLTL	8	Unmodified	_RPGVKLTL_					0	0	0		ENSG00000078668|ENST00000022615|VDAC3;nc|ENSG00000078668|Q9Y277-2|VDAC3;ENST00000604654.1_1_14:100431584-100431647:+|nuORF;nc|ENSG00000165637|P45880-2|VDAC2;ENSG00000165637|ENST00000332211|VDAC2;nc|ENSG00000165637|P45880-1|VDAC2	ENSG00000078668|ENST00000022615|VDAC3	ENSG00000078668|ENST00000022615|VDAC3	MULTI-MSMS	OvCa9_classI_Rep4_	4	442.2910461425781	2	442.28982	882.565087	-0.18552	-8.2052E-05	0.22772	0.00010072	0.042198	1.8664E-05	442.2897864012759	68.858	0.73895	65.368	65.064	65.802	-3.4902					42	14	4	0	0	0	0.40148	3	5122	5122;5133;5147		87.754	18.967	1	384210			49838	1596	41313	41341	53754;53755;53756	53754					0.11910671893701874
RPGVVARAR	9	Unmodified	_RPGVVARAR_					0	0	0			REV__ENST00000582478.5_1_17:80008650-80008794:-|nuORF	REV__ENST00000582478.5_1_17:80008650-80008794:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	491.306884765625	2	491.306867	980.599181	1.1945	0.00058685	-1.2606	-0.00061935	-0.066159	-3.2504E-05	491.3061090650175	36.013	1.3962	33.164	32.889	34.285	-2.849					58	27	3	0	0	0	0.50149	1	1202	1202		42.396	3.59	1	216190	+		49839	27830	41314	41342	53757	53757					0.10810513105309383
RPHAHLRVP	9	Unmodified	_RPHAHLRVP_					0	0	0		nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000023171|Q3KR37|GRAMD1B;nc|ENSG00000023171|Q3KR37-4|GRAMD1B;ENST00000532581.5_1_11:123431173-123490076:+|nuORF;ENSG00000023171|ENST00000635736|GRAMD1B;ENST00000525945.1_1_11:123484122-123493300:+|nuORF;nc|ENSG00000023171|Q3KR37-3|GRAMD1B	nc|ENSG00000023171|Q3KR37-2|GRAMD1B	nc|ENSG00000023171|Q3KR37-2|GRAMD1B	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.81884765625	2	541.820141	1081.62573	-1.4293	-0.00077442	-0.63435	-0.0003437	-2.0636	-0.0011181	541.8197631590607	73.641	1.4358	70.245	69.881	71.317	-3.3961					66	29	3	0	0	0	0.53957	1	5734	5734		38.806	1.647	1	1425500			49840	1035	41315	41343	53758	53758					0.08818201996632524
RPHASGTD	8	Unmodified	_RPHASGTD_					0	0	0		ENSG00000137574|ENST00000260129|TGS1;ENST00000523948.5_1_8:56686169-56737149:+|nuORF	ENSG00000137574|ENST00000260129|TGS1	ENSG00000137574|ENST00000260129|TGS1	MULTI-MSMS	OvCa99_classI_Rep5	1	420.7008361816406	2	420.701566	839.388579	0.39401	0.00016576	-0.67913	-0.00028571	-0.28512	-0.00011995	420.70119147474077	21.275	0.58166	21.275	20.974	21.556	0					24	17	2	0	0	0	0.75241	1	100	100		25.45	1.2474	1	31782			49841	4600	41316	41344	53759	53759					-0.03753989007384462
RPHGRTVRL	9	Unmodified	_RPHGRTVRL_					0	0	0		ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	ENSG00000117133|ENST00000370654|RPF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.3309326171875	2	546.330873	1090.64719	0.57396	0.00031357	-0.97426	-0.00053227	-0.4003	-0.00021869	546.3302191318373	36.413	1.4954	33.564	33.09	34.585	-2.849					89	29	4	0	0	0	0.35444	1	1220	1220		56.721	7.2795	1	390640			49842	3237	41317	41345	53760	53760					0.10549587025366236
RPHHDASTF	9	Unmodified	_RPHHDASTF_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.254150390625	2	534.254497	1066.49444	-0.35945	-0.00019204	0.23599	0.00012608	-0.12346	-6.5958E-05	534.2544609110615	31.29	1.4195	28.759	28.314	29.734	-2.5308					100	53	3	0	0	0	0.31747	3	687	675;687;694		60.972	22.166	1	47830			49843	5651	41318	41346	53761;53762;53763	53762					-0.03614653161912429
RPHHGPLL	8	Unmodified	_RPHHGPLL_					0	0	0			REV__ENSG00000198753|ENST00000361971|PLXNB3	REV__ENSG00000198753|ENST00000361971|PLXNB3	MULTI-SECPEP	OvCa9_classI_Rep2	2	463.3007507324219	2	463.769586	925.524619	-0.63385	-0.00029396	-0.36839	-0.00017085	-1.0022	-0.00046481	463.76917148692917	83.788	1.8516	82.234	81.64	83.491	-1.5535					54	36	3	0	0	0	0.028476	1	7265	7265		57.453	2.6763	1	141530	+		49844	23057	41319	41347	53764	53764					0.05887750293936733
RPHIITAYH	9	Unmodified	_RPHIITAYH_					0	0	0			REV__ENSG00000204657|ENST00000641840|OR2H2	REV__ENSG00000204657|ENST00000641840|OR2H2	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.3045043945312	2	554.306532	1106.59851	0.141	7.816E-05	-3.7478	-0.0020774	-3.6068	-0.0019993	554.304352551779	21.861	1.1079	20.523	20.27	21.378	-1.3386					61	21	4	0	0	0	0.27001	1	223	223		66.429	20.457	1	233410	+		49845	23177	41320	41348	53765	53765					0.04947673665606089
RPHIKPNAL	9	Unmodified	_RPHIKPNAL_					0	0	0		LRFN5|p.A695P|1|0.36|ENSG00000165379|chr14:41891947-41891947|G/C|missense_variant	LRFN5|p.A695P|1|0.36|ENSG00000165379|chr14:41891947-41891947|G/C|missense_variant	LRFN5|p.A695P|1|0.36|ENSG00000165379|chr14:41891947-41891947|G/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.2930908203125	2	523.3169	1044.61925	-0.078513	-4.1087E-05	-1.4252	-0.00074583	-1.5037	-0.00078691	523.316041781356	38.355	0.59359	35.428	35.255	35.849	-2.9264					17	11	2	0	0	0	0.027462	1	1534	1534		11.511	0	1	22970			49846	14801	41321	41349	53766	53766					0.0987226404527064
RPHKWDVAV	9	Unmodified	_RPHKWDVAV_					0	0	0			REV__nc|ENSG00000143486|P41214-2|EIF2D	REV__nc|ENSG00000143486|P41214-2|EIF2D	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.3067626953125	2	554.306532	1106.59851	0.141	7.816E-05	-3.7478	-0.0020774	-3.6068	-0.0019993	554.304352551779	21.861	1.1079	20.523	20.27	21.378	-1.3386					61	21	4	0	0	0	0.51865	1	212	212		40.778	1.5253	1	233410	+		49847	19846	41322	41350	53767	53767					0.04947673665606089
RPHLAHPD	8	Unmodified	_RPHLAHPD_					0	0	0			REV__ENST00000300131.7_1_12:57488507-57488825:+|nuORF	REV__ENST00000300131.7_1_12:57488507-57488825:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.2626953125	2	471.74885	941.483148	-0.14086	-6.645E-05	-0.25275	-0.00011924	-0.39361	-0.00018568	471.7484908935051	53.562	0.56158	50.354	50.149	50.71	-3.208					17	10	2	0	0	0	0.028476	1	3269	3269		47.916	26.213	1	30332	+		49848	24230	41323	41351	53768	53768					0.010065695346042958
RPHLCQILK	9	Unmodified	_RPHLCQILK_					0	0	0		ENST00000576772.1_1_17:5087550-5094756:-|nuORF	ENST00000576772.1_1_17:5087550-5094756:-|nuORF	ENST00000576772.1_1_17:5087550-5094756:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.3045043945312	2	554.326411	1106.63827	0.13432	7.4455E-05	3.5998	0.0019954	3.7341	0.0020699	554.8299993864946	21.786	0.55574	20.447	20.321	20.877	-1.3386					16	10	2	0	0	0	0.027462	1	223	223		53.351	3.9099	1	40460			49849	13951	41324	41352	53769	53769					0.08921477344665618
RPHLEMEPYG	10	Unmodified	_RPHLEMEPYG_					0	0	0		ENSG00000198105|ENST00000395867|ZNF248	ENSG00000198105|ENST00000395867|ZNF248	ENSG00000198105|ENST00000395867|ZNF248	MULTI-SECPEP	OvCa9_classI_Rep4_	4	615.3468017578125	2	614.792598	1227.57064	0.9803	0.00060268	1.3585	0.00083517	2.3388	0.0014379	614.7932977812071	84.28	1.279	81.617	81.215	82.494	-2.6629					48	26	2	0	0	0	0.026956	1	7017	7017		14.137	3.8719	1	63238			49850	8785	41325	41353	53770	53770					-0.03404017376806223
RPHLEMEPYG	10	Unmodified	_RPHLEMEPYG_					0	0	0		ENSG00000198105|ENST00000395867|ZNF248	ENSG00000198105|ENST00000395867|ZNF248	ENSG00000198105|ENST00000395867|ZNF248	MULTI-MATCH	OvCa9_classI_Rep2	2		2	614.792598	1227.57064	-0.78597	-0.00048321	3.0147	0.0018534	2.2288	0.0013702	614.7944321347218	83.326	1.4206	81.727	81.115	82.535	-1.5988	-0.04434	0.00096558	NaN	14.137	48	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38338			49851	8785	41325	41353							-0.03404017376806223
RPHLEMEPYG	10	Unmodified	_RPHLEMEPYG_					0	0	0		ENSG00000198105|ENST00000395867|ZNF248	ENSG00000198105|ENST00000395867|ZNF248	ENSG00000198105|ENST00000395867|ZNF248	MULTI-MATCH	OvCa9_classI_Rep3	3		2	614.792598	1227.57064	0.23475	0.00014433	2.2095	0.0013584	2.4443	0.0015027	614.7936967581684	84.231	1.3576	81.97	81.346	82.704	-2.261	0.19859	-2.4512E-05	NaN	14.137	48	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58084			49852	8785	41325	41353							-0.03404017376806223
RPHLLLKRKEW	11	Unmodified	_RPHLLLKRKEW_					0	0	0			REV__ENST00000574951.5_1_17:4883279-4883390:-|nuORF	REV__ENST00000574951.5_1_17:4883279-4883390:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	492.6352844238281	3	492.636772	1474.88849	-4.4123	-0.0021737	-0.46274	-0.00022796	-4.8751	-0.0024016	492.6364518280441	160.52	2.4825	160.29	159.35	161.83	-0.22697					136	50	4	0	0	0	0.72542	2	16312	16312;16343		10.104	4.1029	1	91160	+		49853	27767	41326	41354	53771;53772	53771					0.17003777941795306
RPHLRLIP	8	Unmodified	_RPHLRLIP_					0	0	0			REV__ENST00000574371.1_1_17:51183363-51183408:+|nuORF	REV__ENST00000574371.1_1_17:51183363-51183408:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.3283996582031	2	501.321986	1000.62942	1.8952	0.00095011	2.3068	0.0011564	4.202	0.0021065	501.32308942267105	133.8	0.52345	133.8	133.58	134.1	0					19	10	3	0	0	0	0.028476	1	15569	15569		21.702	1.2205	1	90543	+		49854	27764	41327	41355	53773	53773					0.12912871770504353
RPHMGQLPF	9	Unmodified	_RPHMGQLPF_					0	0	0			REV__nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	REV__nc|ENSG00000124151|Q9Y6Q9-4|NCOA3	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.346435546875	2	541.781836	1081.54912	-0.59647	-0.00032316	-3.9937	-0.0021637	-4.5902	-0.0024869	541.7792500038444	83.401	0.4353	81.14	80.867	81.302	-2.261					14	8	2	0	0	0	0.027408	1	4729	4729		68.485	0	1	28371	+		49855	18666	41328	41356	53774	53774					0.011606423851617365
RPHSGLPGK	9	Unmodified	_RPHSGLPGK_					0	0	0		nc|ENSG00000026559|Q9UIX4-2|KCNG1;ENSG00000026559|ENST00000371571|KCNG1	nc|ENSG00000026559|Q9UIX4-2|KCNG1	nc|ENSG00000026559|Q9UIX4-2|KCNG1	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.7726135253906	2	474.772326	947.530098	1.4458	0.0006864	-1.8304	-0.00086903	-0.38467	-0.00018263	474.7714054184023	37.259	2.3363	34.367	33.695	36.031	-2.8925					116	46	4	0	0	0	0.50149	1	1333	1333		42.396	6.7778	1	1197600			49856	1051	41329	41357	53775	53775					0.05423429085760745
RPHSLYKV	8	Unmodified	_RPHSLYKV_					0	0	0			REV__nc|ENSG00000164197|Q86T96-2|RNF180	REV__nc|ENSG00000164197|Q86T96-2|RNF180	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.82470703125	2	500.290351	998.566149	-1.1488	-0.00057471	0.56516	0.00028274	-0.5836	-0.00029197	500.29066776202427	60.306	1.6769	57.536	56.725	58.402	-2.7702					68	31	4	0	0	0	0.028476	1	4529	4529		24.203	0	1	90774	+		49857	20959	41330	41358	53776	53776					0.06680886262608965
RPHTDTEKI	9	Unmodified	_RPHTDTEKI_					0	0	0		tr|A0A7D6ZYT2|A0A7D6ZYT2_9CLOTPropanediolutilizationmicrocompartmentproteinPduAOS=ClostridiumintestinaleOX=36845GN=pduAPE=3SV=1;tr|A0A7D6VYZ1|A0A7D6VYZ1_9CLOTPropanediolutilizationmicrocompartmentproteinPduAOS=ClostridiumintestinaleOX=36845GN=pduAPE=3SV=1	tr|A0A7D6ZYT2|A0A7D6ZYT2_9CLOTPropanediolutilizationmicrocompartmentproteinPduAOS=ClostridiumintestinaleOX=36845GN=pduAPE=3SV=1	tr|A0A7D6ZYT2|A0A7D6ZYT2_9CLOTPropanediolutilizationmicrocompartmentproteinPduAOS=ClostridiumintestinaleOX=36845GN=pduAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.354736328125	2	548.790912	1095.56727	-0.42707	-0.00023437	3.4438	0.0018899	3.0167	0.0016555	548.7925931607608	98.848	0.51608	96.523	96.279	96.795	-2.3253					21	9	3	0	0	0	0.02744	1	8787	8787		52.937	0	1	36386			49858	35344	41331	41359	53777	53777					0.023310558408638826
RPHTDTEKI	9	Unmodified	_RPHTDTEKI_					0	0	0		tr|A0A7D6ZYT2|A0A7D6ZYT2_9CLOTPropanediolutilizationmicrocompartmentproteinPduAOS=ClostridiumintestinaleOX=36845GN=pduAPE=3SV=1;tr|A0A7D6VYZ1|A0A7D6VYZ1_9CLOTPropanediolutilizationmicrocompartmentproteinPduAOS=ClostridiumintestinaleOX=36845GN=pduAPE=3SV=1	tr|A0A7D6ZYT2|A0A7D6ZYT2_9CLOTPropanediolutilizationmicrocompartmentproteinPduAOS=ClostridiumintestinaleOX=36845GN=pduAPE=3SV=1	tr|A0A7D6ZYT2|A0A7D6ZYT2_9CLOTPropanediolutilizationmicrocompartmentproteinPduAOS=ClostridiumintestinaleOX=36845GN=pduAPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	548.790912	1095.56727	-0.81313	-0.00044624	4.1162	0.0022589	3.3031	0.0018127	548.7928821784928	98.287	0.56674	96.528	96.211	96.778	-1.7595	0.0026211	0.00040671	NaN	52.937	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39760			49859	35344	41331	41359							0.023310558408638826
RPHTKNVL	8	Unmodified	_RPHTKNVL_					0	0	0		TRRAP|p.L2853Nfs*14|1|0.37|ENSG00000196367|chr7:98978847-98978848|-/AA|frameshift_variant;TRRAP|p.Q3700Cfs*14|1|0.37|ENSG00000196367|chr7:99011251-99011252|-/GTGCGTTAAATCTGTCACCAGAA|frameshift_variant;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.V815Afs*78|1|0.09|ENSG00000196367|chr7:98917500-98917501|-/CCTCCTCTATCCTCCTCATCCT|frameshift_variant;TRRAP|p.F1061Yfs*20|1|0.05|ENSG00000196367|chr7:98929994-98929995|-/A|frameshift_variant;TRRAP|p.G1086Afs*42|1|0.04|ENSG00000196367|chr7:98930067-98930068|-/GGCCACTTGTATTTGTTCACTTTTATTTCCGATCC|frameshift_variant	TRRAP|p.L2853Nfs*14|1|0.37|ENSG00000196367|chr7:98978847-98978848|-/AA|frameshift_variant;TRRAP|p.G1086Afs*42|1|0.04|ENSG00000196367|chr7:98930067-98930068|-/GGCCACTTGTATTTGTTCACTTTTATTTCCGATCC|frameshift_variant	TRRAP|p.L2853Nfs*14|1|0.37|ENSG00000196367|chr7:98978847-98978848|-/AA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.7875061035156	2	482.787976	963.561398	0.74797	0.00036111	-0.69271	-0.00033443	0.055261	2.6679E-05	482.78750853491204	35.113	1.2016	32.264	31.987	33.189	-2.849					39	23	2	0	0	0	0.40148	1	1096	1096		87.754	39.839	1	140210			49860	8597;36286	41332	41360	53778	53778					0.07816002119830046
RPHVQLSP	8	Unmodified	_RPHVQLSP_					0	0	0		ENST00000420716.2_1_3:195591054-195595875:-|nuORF;nc|ENSG00000061938|Q07912|TNK2;ENSG00000061938|ENST00000672887|TNK2;nc|ENSG00000061938|Q07912-3|TNK2	ENST00000420716.2_1_3:195591054-195595875:-|nuORF	ENST00000420716.2_1_3:195591054-195595875:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.27667236328125	2	467.266876	932.519199	-0.47455	-0.00022174	-1.1849	-0.00055369	-1.6595	-0.00077542	467.26625085548926	73.923	0.90262	70.692	70.483	71.385	-3.2308					45	18	3	0	0	0	0.028476	1	5801	5801		47.916	0	1	208170			49861	1274	41333	41361	53779	53779					0.050240267114645576
RPHYGSVL	8	Unmodified	_RPHYGSVL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	OvCa9_classI_Rep2	2	464.75311279296875	2	464.753601	927.49265	-0.99545	-0.00046264	1.1917	0.00055384	0.19624	9.1203E-05	464.7539903804927	55.856	1.3875	53.052	52.532	53.919	-2.804					71	27	3	0	0	0	0.45246	2	3913	3907;3913		82.305	32.28	1	226450			49862	4862	41334	41362	53780;53781	53781					0.026003378201380656
RPHYGSVL	8	Unmodified	_RPHYGSVL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	464.75445556640625	2	464.753601	927.49265	-0.11535	-5.3611E-05	0.1112	5.1681E-05	-0.0041525	-1.9299E-06	464.7535128881298	56.481	1.7246	53.186	52.668	54.392	-3.2944					92	33	4	0	0	0	0.56195	2	3628	3615;3628		71.296	21.271	1	562540			49863	4862	41334	41362	53782;53783	53783					0.026003378201380656
RPIASPIPLQ	10	Unmodified	_RPIASPIPLQ_					0	0	0			REV__ENST00000492431.1_1_1:109822777-109824720:-|nuORF	REV__ENST00000492431.1_1_1:109822777-109824720:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	546.3323364257812	2	546.332216	1090.64988	-2.6411	-0.0014429	-0.058936	-3.2199E-05	-2.7001	-0.0014751	546.3320576477423	36.639	1.8723	33.93	33.647	35.519	-2.7097					83	37	3	0	0	0	0.66944	1	1596	1596		33.922	0.40605	1	180730	+		49864	19182	41335	41363	53784	53784					0.10817997639651367
RPIFPGKHYL	10	Unmodified	_RPIFPGKHYL_					0	0	0		nc|ENSG00000100030|P28482-2|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000100030|ENST00000215832|MAPK1;ENSG00000102882|ENST00000263025|MAPK3	nc|ENSG00000100030|P28482-2|MAPK1	nc|ENSG00000100030|P28482-2|MAPK1	MULTI-MSMS	OvCa9_classI_Rep2	2	409.9046936035156	3	409.904747	1226.69241	0.57154	0.00023428	-0.46978	-0.00019256	0.10176	4.1712E-05	409.90445877105833	69.374	2.1122	66.754	66.316	68.428	-2.6203					114	41	4	0	0	0	0.49595	2	5509	5509;5515		54.722	19.409	1	353050			49865	1997	41336	41364	53785;53786	53785					0.08813392767910955
RPIFPGKHYL	10	Unmodified	_RPIFPGKHYL_					0	0	0		nc|ENSG00000100030|P28482-2|MAPK1;nc|ENSG00000102882|P27361-2|MAPK3;nc|ENSG00000102882|P27361-3|MAPK3;ENSG00000100030|ENST00000215832|MAPK1;ENSG00000102882|ENST00000263025|MAPK3	nc|ENSG00000100030|P28482-2|MAPK1	nc|ENSG00000100030|P28482-2|MAPK1	MULTI-MATCH	OvCa9_classI_Rep3	3		3	409.904747	1226.69241	1.3977	0.00057293	-1.1842	-0.00048541	0.21351	8.7519E-05	409.9041437790369	69.844	2.9958	67.124	66.607	69.603	-2.7196	0.18541	-0.00033965	NaN	54.722	187	59	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	268800			49866	1997	41336	41364							0.08813392767910955
RPIGALARGAI	11	Unmodified	_RPIGALARGAI_					0	0	0		nc|ENSG00000160679|Q9Y3Y2-4|CHTOP;ENSG00000160679|ENST00000368694|CHTOP;nc|ENSG00000160679|Q9Y3Y2-3|CHTOP	nc|ENSG00000160679|Q9Y3Y2-4|CHTOP	nc|ENSG00000160679|Q9Y3Y2-4|CHTOP	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.341064453125	2	547.843282	1093.67201	-1.5321	-0.00083933	-0.89362	-0.00048957	-2.4257	-0.0013289	547.8426338015213	72.701	2.9908	69.305	68.424	71.415	-3.3961					128	61	3	0	0	0	0.69455	1	5651	5651		31.53	0	1	1444700			49867	6078	41337	41365	53787	53787					0.12892222108075657
RPIGGRRTKG	10	Unmodified	_RPIGGRRTKG_					0	0	0			REV__ENST00000511242.1_1_5:112783941-112824318:-|nuORF	REV__ENST00000511242.1_1_5:112783941-112824318:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	549.3364868164062	2	549.336156	1096.65776	-0.14808	-8.1344E-05	-0.94475	-0.00051898	-1.0928	-0.00060033	549.3357263411247	31.004	0.57961	31.004	30.781	31.361	0					28	11	3	0	0	0	0.55359	1	1258	1258		47.657	8.8512	1	11011000	+		49868	26958	41338	41366	53788	53788					0.11329569679764973
RPIGKAKPK	9	Unmodified	_RPIGKAKPK_					0	0	0		ENSG00000176040|ENST00000452346|TMPRSS7	ENSG00000176040|ENST00000452346|TMPRSS7	ENSG00000176040|ENST00000452346|TMPRSS7	MULTI-MSMS	OvCa9_classI_Rep2	2	497.8286437988281	2	497.829643	993.644734	1.6522	0.0008225	-2.095	-0.0010429	-0.44279	-0.00022044	497.8285287048733	88.973	2.1743	87.605	87.231	89.406	-1.3676					112	43	4	0	0	0	0.56889	1	7855	7855		35.618	3.6634	1	825450			49869	7578	41339	41367	53789	53789					0.14765738567689368
RPIIARYGHK	10	Unmodified	_RPIIARYGHK_					0	0	0			REV__tr|A0A7D6ZYK4|A0A7D6ZYK4_9CLOTLysRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03030PE=3SV=1	REV__tr|A0A7D6ZYK4|A0A7D6ZYK4_9CLOTLysRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03030PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	405.23828125	3	404.243763	1209.70946	0.62491	0.00025261	3.5913	0.0014518	4.2162	0.0017044	404.24683526882393	45.616	0.83368	42.578	41.971	42.805	-3.0385					24	15	3	0	0	0	0.026694	1	2365	2365		38.754	0.94209	1	13573	+		49870	32380	41340	41368	53790	53790					0.1129931337366088
RPIIERSNE	9	Unmodified	_RPIIERSNE_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MULTI-MSMS	OvCa9_classI_Rep2	2	557.3060913085938	2	557.304187	1112.59382	0.76161	0.00042445	2.417	0.001347	3.1786	0.0017715	557.305338519675	79.155	2.3119	77.415	76.512	78.824	-1.7398					80	45	2	0	0	0	0.3076	1	6654	6654		62.107	10.772	1	417440	+		49871	19860	41341	41369	53791	53791					0.04202744732174324
RPIILLDSL	9	Unmodified	_RPIILLDSL_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.3300170898438	2	520.329142	1038.64373	-1.464	-0.00076178	0.94294	0.00049064	-0.52109	-0.00027114	520.329206560183	124.64	1.0438	123.25	122.97	124.01	-1.3908					35	19	3	0	0	0	0.53483	1	11828	11828		39.253	2.0937	1	68249			49872	7511	41342	41370	53792	53792					0.12595479408128085
RPIIRSTT	8	Unmodified	_RPIIRSTT_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2;ACTR2|p.L303Gfs*32|1|0.04|ENSG00000138071|chr2:65265066-65265067|-/TGGAGTGCAGTGGTGCAGTCTCG|frameshift_variant;ENST00000409926.2_1_22:25082945-25083062:+|nuORF	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	OvCa99_classI_Rep5	1	472.28887939453125	2	472.287808	942.561064	1.2362	0.00058385	0.50135	0.00023678	1.7376	0.00082063	472.28794462179513	155.21	0.80492	155.21	154.88	155.68	0					35	15	3	0	0	0	0.74971	1	18175	18175		26.796	0	1	490820			49873	4652	41343	41371	53793	53793					0.08748582399982752
RPIKNKSA	8	Unmodified	_RPIKNKSA_					0	0	0			REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.448906025747238|0.1317034148076854|3.46|417.0|151|3|sense	REV__L1PA3_dup10510|chr20:40619323-40625356:+|1.448906025747238|0.1317034148076854|3.46|417.0|151|3|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	457.2835388183594	2	457.282526	912.550499	0.26034	0.00011905	-0.65608	-0.00030001	-0.39574	-0.00018096	457.2821433033136	59.467	2.2271	56.075	55.655	57.882	-3.392					117	44	5	0	0	0	0.71267	1	3979	3979		40.778	0	1	1427100	+		49874	28483	41344	41372	53794	53794					0.09072599745547905
RPIKRAEF	8	Unmodified	_RPIKRAEF_					0	0	0			REV__ENSG00000196391|ENST00000354377|ZNF774	REV__ENSG00000196391|ENST00000354377|ZNF774	MULTI-MSMS	OvCa9_classI_Rep3	3	508.803955078125	2	508.803626	1015.5927	-0.66266	-0.00033716	0.39402	0.00020048	-0.26864	-0.00013669	508.8039978631368	74.675	1.1236	72.264	71.747	72.87	-2.4106					60	22	5	0	0	0	0.65062	1	3720	3720		53.351	0.41475	1	1714500	+		49875	22821	41345	41373	53795	53795					0.08552575153930775
RPIKTATTL	9	Unmodified	_RPIKTATTL_					0	0	0		ENSG00000136770|ENST00000376980|DNAJC1	ENSG00000136770|ENST00000376980|DNAJC1	ENSG00000136770|ENST00000376980|DNAJC1	MULTI-MSMS	OvCa9_classI_Rep2	2	500.8108825683594	2	500.811116	999.60768	-1.0985	-0.00055014	0.67144	0.00033627	-0.42705	-0.00021387	500.8113530634366	47.85	1.0429	45.141	44.737	45.779	-2.7097					36	20	2	0	0	0	0.37135	2	2940	2940;2945		54.776	10.354	1	130710			49876	4512	41346	41374	53796;53797	53796					0.10786022231263814
RPIKTATTL	9	Unmodified	_RPIKTATTL_					0	0	0		ENSG00000136770|ENST00000376980|DNAJC1	ENSG00000136770|ENST00000376980|DNAJC1	ENSG00000136770|ENST00000376980|DNAJC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.8122863769531	2	500.811116	999.60768	-0.59136	-0.00029616	0.031358	1.5704E-05	-0.56001	-0.00028046	500.8110155547449	48.172	1.0254	45.064	44.736	45.761	-3.1077					64	19	4	0	0	0	0.14855	2	2638	2638;2650		85.161	16.374	1	567770			49877	4512	41346	41374	53798;53799	53798					0.10786022231263814
RPILLPLCI	9	Unmodified	_RPILLPLCI_					0	0	0			REV__ENST00000396197.7_1_11:18568567-18579813:-|nuORF	REV__ENST00000396197.7_1_11:18568567-18579813:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	519.3318481445312	2	519.33063	1036.64671	-0.57385	-0.00029802	3.2624	0.0016942	2.6885	0.0013962	519.3325152322785	77.14	2.0378	74.769	74.348	76.385	-2.3715					111	39	4	0	0	0	0.37146	1	4041	4041		54.765	7.9982	1	982990	+		49878	25329	41347	41375	53800	53800					0.12985031261268887
RPILTIITL	9	Unmodified	_RPILTIITL_					0	0	0		ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-4|TP53;TP53|p.R273Lfs*72|1|0.81|ENSG00000141510|chr17:7673802-7673802|C/-|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;TP53|p.N288Kfs*18|1|0.7|ENSG00000141510|chr17:7673756-7673757|-/T|frameshift_variant;nc|ENSG00000141510|P04637-6|TP53;TP53|p.P316Sfs*21|1|0.91|ENSG00000141510|chr17:7673582-7673583|-/A|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;TP53|p.E343Gfs*2|1|0.53|ENSG00000141510|chr17:7670681-7670681|T/-|frameshift_variant;TP53|p.C277Vfs*68|1|0.58|ENSG00000141510|chr17:7673792-7673792|G/-|frameshift_variant;TP53|p.K320Rfs*25|1|0.82|ENSG00000141510|chr17:7673571-7673571|C/-|frameshift_variant;chr17:7675215-7675994|303|31.2|0.42|6.22|-|ENST00000604348|TP53,TP53;TP53|p.R333Vfs*12|1|0.81|ENSG00000141510|chr17:7670712-7670712|G/-|frameshift_variant;TP53|p.R342Efs*3|1|0.71|ENSG00000141510|chr17:7670685-7670685|G/-|frameshift_variant;TP53|p.T284Qfs*61|1|0.58|ENSG00000141510|chr17:7673770-7673770|T/-|frameshift_variant;TP53|p.V272Cfs*73|1|0.61|ENSG00000141510|chr17:7673806-7673806|C/-|frameshift_variant;TP53|p.R282Pfs*65|1|0.8|ENSG00000141510|chr17:7673775-7673776|-/CGGCG|frameshift_variant;nc|ENSG00000141510|P04637-3|TP53;TP53|p.M340Sfs*8|1|0.75|ENSG00000141510|chr17:7670690-7670691|-/TCAC|frameshift_variant;TP53|p.L348Wfs*22|1|0.63|ENSG00000141510|chr17:7670666-7670666|A/-|frameshift_variant;TP53|p.N345Mfs*25|1|0.68|ENSG00000141510|chr17:7670677-7670677|C/-|frameshift_variant;TP53|p.F338Lfs*7|1|0.55|ENSG00000141510|chr17:7670695-7670695|G/-|frameshift_variant;nc|ENSG00000141510|P04637-7|TP53;nc|ENSG00000141510|P04637-8|TP53;nc|ENSG00000141510|P04637-9|TP53;TP53|p.E258K|1|0.69|ENSG00000141510|chr17:7674191-7674191|C/T|missense_variant;TP53|p.L330Ffs*15|1|0.51|ENSG00000141510|chr17:7673540-7673540|G/-|frameshift_variant	ENSG00000141510|ENST00000269305|TP53;TP53|p.L330Ffs*15|1|0.51|ENSG00000141510|chr17:7673540-7673540|G/-|frameshift_variant	ENSG00000141510|ENST00000269305|TP53	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3468627929688	2	520.347335	1038.68012	1.3364	0.00069541	-1.6775	-0.00087287	-0.34103	-0.00017745	520.346442572037	129.27	2.7244	129.04	128.62	131.35	-0.22697					153	54	5	0	0	0	0.041116	14	12693	12663;12675;12681;12693;12699;12705;12711;12717;12723;12729;12735;12741;12747;12785		125.81	15.505	1	2451300			49879	4919;32977	41348	41376	53801;53802;53803;53804;53805;53806;53807;53808;53809;53810;53811;53812;53813;53814	53804					0.1623235630486306
RPILTIITL	9	Unmodified	_RPILTIITL_					0	0	0		ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-4|TP53;TP53|p.R273Lfs*72|1|0.81|ENSG00000141510|chr17:7673802-7673802|C/-|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;TP53|p.N288Kfs*18|1|0.7|ENSG00000141510|chr17:7673756-7673757|-/T|frameshift_variant;nc|ENSG00000141510|P04637-6|TP53;TP53|p.P316Sfs*21|1|0.91|ENSG00000141510|chr17:7673582-7673583|-/A|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;TP53|p.E343Gfs*2|1|0.53|ENSG00000141510|chr17:7670681-7670681|T/-|frameshift_variant;TP53|p.C277Vfs*68|1|0.58|ENSG00000141510|chr17:7673792-7673792|G/-|frameshift_variant;TP53|p.K320Rfs*25|1|0.82|ENSG00000141510|chr17:7673571-7673571|C/-|frameshift_variant;chr17:7675215-7675994|303|31.2|0.42|6.22|-|ENST00000604348|TP53,TP53;TP53|p.R333Vfs*12|1|0.81|ENSG00000141510|chr17:7670712-7670712|G/-|frameshift_variant;TP53|p.R342Efs*3|1|0.71|ENSG00000141510|chr17:7670685-7670685|G/-|frameshift_variant;TP53|p.T284Qfs*61|1|0.58|ENSG00000141510|chr17:7673770-7673770|T/-|frameshift_variant;TP53|p.V272Cfs*73|1|0.61|ENSG00000141510|chr17:7673806-7673806|C/-|frameshift_variant;TP53|p.R282Pfs*65|1|0.8|ENSG00000141510|chr17:7673775-7673776|-/CGGCG|frameshift_variant;nc|ENSG00000141510|P04637-3|TP53;TP53|p.M340Sfs*8|1|0.75|ENSG00000141510|chr17:7670690-7670691|-/TCAC|frameshift_variant;TP53|p.L348Wfs*22|1|0.63|ENSG00000141510|chr17:7670666-7670666|A/-|frameshift_variant;TP53|p.N345Mfs*25|1|0.68|ENSG00000141510|chr17:7670677-7670677|C/-|frameshift_variant;TP53|p.F338Lfs*7|1|0.55|ENSG00000141510|chr17:7670695-7670695|G/-|frameshift_variant;nc|ENSG00000141510|P04637-7|TP53;nc|ENSG00000141510|P04637-8|TP53;nc|ENSG00000141510|P04637-9|TP53;TP53|p.E258K|1|0.69|ENSG00000141510|chr17:7674191-7674191|C/T|missense_variant;TP53|p.L330Ffs*15|1|0.51|ENSG00000141510|chr17:7673540-7673540|G/-|frameshift_variant	ENSG00000141510|ENST00000269305|TP53;TP53|p.L330Ffs*15|1|0.51|ENSG00000141510|chr17:7673540-7673540|G/-|frameshift_variant	ENSG00000141510|ENST00000269305|TP53	MULTI-MSMS	OvCa9_classI_Rep3	3	520.347412109375	2	520.347335	1038.68012	0.45282	0.00023562	-0.76983	-0.00040058	-0.31702	-0.00016496	520.346854726536	130.58	2.2687	129.46	129.13	131.39	-1.1166					144	45	5	0	0	0	0.070405	8	10396	10366;10378;10384;10396;10402;10415;10421;10427		107.01	15.21	1	1601100			49880	4919;32977	41348	41376	53815;53816;53817;53818;53819;53820;53821;53822	53818					0.1623235630486306
RPILTIITL	9	Unmodified	_RPILTIITL_					0	0	0		ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-4|TP53;TP53|p.R273Lfs*72|1|0.81|ENSG00000141510|chr17:7673802-7673802|C/-|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;TP53|p.N288Kfs*18|1|0.7|ENSG00000141510|chr17:7673756-7673757|-/T|frameshift_variant;nc|ENSG00000141510|P04637-6|TP53;TP53|p.P316Sfs*21|1|0.91|ENSG00000141510|chr17:7673582-7673583|-/A|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;TP53|p.E343Gfs*2|1|0.53|ENSG00000141510|chr17:7670681-7670681|T/-|frameshift_variant;TP53|p.C277Vfs*68|1|0.58|ENSG00000141510|chr17:7673792-7673792|G/-|frameshift_variant;TP53|p.K320Rfs*25|1|0.82|ENSG00000141510|chr17:7673571-7673571|C/-|frameshift_variant;chr17:7675215-7675994|303|31.2|0.42|6.22|-|ENST00000604348|TP53,TP53;TP53|p.R333Vfs*12|1|0.81|ENSG00000141510|chr17:7670712-7670712|G/-|frameshift_variant;TP53|p.R342Efs*3|1|0.71|ENSG00000141510|chr17:7670685-7670685|G/-|frameshift_variant;TP53|p.T284Qfs*61|1|0.58|ENSG00000141510|chr17:7673770-7673770|T/-|frameshift_variant;TP53|p.V272Cfs*73|1|0.61|ENSG00000141510|chr17:7673806-7673806|C/-|frameshift_variant;TP53|p.R282Pfs*65|1|0.8|ENSG00000141510|chr17:7673775-7673776|-/CGGCG|frameshift_variant;nc|ENSG00000141510|P04637-3|TP53;TP53|p.M340Sfs*8|1|0.75|ENSG00000141510|chr17:7670690-7670691|-/TCAC|frameshift_variant;TP53|p.L348Wfs*22|1|0.63|ENSG00000141510|chr17:7670666-7670666|A/-|frameshift_variant;TP53|p.N345Mfs*25|1|0.68|ENSG00000141510|chr17:7670677-7670677|C/-|frameshift_variant;TP53|p.F338Lfs*7|1|0.55|ENSG00000141510|chr17:7670695-7670695|G/-|frameshift_variant;nc|ENSG00000141510|P04637-7|TP53;nc|ENSG00000141510|P04637-8|TP53;nc|ENSG00000141510|P04637-9|TP53;TP53|p.E258K|1|0.69|ENSG00000141510|chr17:7674191-7674191|C/T|missense_variant;TP53|p.L330Ffs*15|1|0.51|ENSG00000141510|chr17:7673540-7673540|G/-|frameshift_variant	ENSG00000141510|ENST00000269305|TP53;TP53|p.L330Ffs*15|1|0.51|ENSG00000141510|chr17:7673540-7673540|G/-|frameshift_variant	ENSG00000141510|ENST00000269305|TP53	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.346435546875	2	520.347335	1038.68012	2.9948	0.0015583	-3.7019	-0.0019263	-0.70713	-0.00036795	520.3453507640438	130.94	2.3528	129.46	129.06	131.41	-1.4779					149	47	5	0	0	0	0.064985	6	12573	12573;12597;12609;12622;12633;12645		110.12	8.5192	1	2675200			49881	4919;32977	41348	41376	53823;53824;53825;53826;53827;53828	53823					0.1623235630486306
RPIQLTVGR	9	Unmodified	_RPIQLTVGR_					0	0	0			REV__ENST00000505025.1_1_4:184908987-184909554:+|nuORF	REV__ENST00000505025.1_1_4:184908987-184909554:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.303955078125	2	520.322183	1038.62981	0.90263	0.00046966	-1.2115	-0.00063039	-0.30891	-0.00016073	520.3214587445592	43.262	0.29713	40.552	40.361	40.658	-2.7097					8	5	2	0	0	0	0.027433	1	2391	2391		51.335	1.7994	1	7247.9	+		49882	26869	41349	41377	53829	53829					0.11204246699685427
RPIQQASL	8	Unmodified	_RPIQQASL_					0	0	0			REV__ENSG00000156469|ENST00000287025|MTERF3	REV__ENSG00000156469|ENST00000287025|MTERF3	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.7669677734375	2	456.766709	911.518865	1.0566	0.00048261	-0.82415	-0.00037644	0.23244	0.00010617	456.76612331713255	35.878	1.0978	33.029	32.79	33.887	-2.849					56	21	3	0	0	0	0.64026	1	1198	1198		55.504	4.1688	1	149900	+		49883	20480	41350	41378	53830	53830					0.05956606991605895
RPIQQASL	8	Unmodified	_RPIQQASL_					0	0	0			REV__ENSG00000156469|ENST00000287025|MTERF3	REV__ENSG00000156469|ENST00000287025|MTERF3	MULTI-MATCH	OvCa99_classI_Rep5	1		2	456.766709	911.518865	0.039719	1.8142E-05	-0.095952	-4.3828E-05	-0.056233	-2.5685E-05	456.7665331421105	33.172	0.49391	33.172	32.989	33.483	0	0.071511	0.00051093	NaN	55.504	19	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	99521	+		49884	20480	41350	41378							0.05956606991605895
RPIRALTQARG	11	Unmodified	_RPIRALTQARG_					0	0	0		ENSG00000178814|ENST00000618853|OPLAH	ENSG00000178814|ENST00000618853|OPLAH	ENSG00000178814|ENST00000618853|OPLAH	MULTI-MSMS	OvCa9_classI_Rep3	3	413.9219970703125	3	413.586189	1237.73674	1.5895	0.00065738	1.698	0.00070227	3.2875	0.0013596	413.5867931980936	68.355	2.099	65.541	64.862	66.961	-2.8144					118	41	5	0	0	0	0.69099	1	2997	2997		23.514	0	1	366370			49885	7779	41351	41379	53831	53831					0.12737796914052524
RPIRITINS	9	Unmodified	_RPIRITINS_					0	0	0			REV__nc|ENSG00000006071|Q09428-2|ABCC8	REV__nc|ENSG00000006071|Q09428-2|ABCC8	MULTI-MSMS	OvCa9_classI_Rep2	2	535.326904296875	2	535.327465	1068.64038	-1.2502	-0.00066929	0.80875	0.00043294	-0.4415	-0.00023635	535.3279070397938	59.315	2.607	56.535	55.888	58.495	-2.7801					134	49	4	0	0	0	0.37182	3	4335	4312;4335;4342		54.722	13.296	1	990330	+		49886	16409	41352	41380	53832;53833;53834	53833					0.10880229354120274
RPIRITINS	9	Unmodified	_RPIRITINS_					0	0	0			REV__nc|ENSG00000006071|Q09428-2|ABCC8	REV__nc|ENSG00000006071|Q09428-2|ABCC8	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.3287963867188	2	535.327465	1068.64038	-0.57139	-0.00030588	-0.28073	-0.00015028	-0.85212	-0.00045616	535.3273569849397	60.036	1.8717	56.606	56.259	58.131	-3.43					104	37	4	0	0	0	0.35694	3	4078	4052;4078;4091		56.434	18.622	1	1821400	+		49887	16409	41352	41380	53835;53836;53837	53836					0.10880229354120274
RPIRQILYL	9	Unmodified	_RPIRQILYL_					0	0	0		ENSG00000178982|ENST00000248342|EIF3K;ENST00000586932.5_1_19:39109833-39116793:+|nuORF;ENST00000593062.5_1_19:39109833-39121488:+|nuORF;nc|ENSG00000178982|Q9UBQ5-2|EIF3K	ENSG00000178982|ENST00000248342|EIF3K	ENSG00000178982|ENST00000248342|EIF3K	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.3707275390625	2	586.369133	1170.72371	-0.81014	-0.00047504	0.51223	0.00030036	-0.29791	-0.00017468	586.3692629340027	94.416	2.9527	91.947	91.666	94.618	-2.4685					167	58	5	0	0	0	0.53957	1	8358	8358		38.806	3.1879	1	1387500			49888	7789	41353	41381	53838	53838					0.1451796580199698
RPIRSLGRL	9	Unmodified	_RPIRSLGRL_					0	0	0			REV__ENST00000327155.9_1_18:20513414-20516744:+|nuORF	REV__ENST00000327155.9_1_18:20513414-20516744:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	534.3433227539062	2	534.343449	1066.67235	1.9733	0.0010544	-1.9799	-0.0010579	-0.0065619	-3.5063E-06	534.3423036869325	64.763	1.4145	61.77	61.395	62.809	-2.9933					70	27	3	0	0	0	0.56189	1	2551	2551		36.447	2.2742	1	193540	+		49889	24496	41354	41382	53839	53839					0.14167641827953048
RPISDFLTL	9	Unmodified	_RPISDFLTL_					0	0	0		ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	MULTI-MSMS	OvCa9_classI_Rep2	2	531.3038330078125	2	531.303124	1060.5917	-1.6359	-0.00086914	1.1184	0.00059418	-0.51752	-0.00027496	531.3036361456938	121.24	1.2365	121.04	120.75	121.99	-0.19718					54	24	3	0	0	0	0.35444	1	11723	11723		56.721	0	1	173930			49890	6966	41355	41383	53840	53840					0.06382315994369492
RPISDFLTL	9	Unmodified	_RPISDFLTL_					0	0	0		ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	ENSG00000169018|ENST00000306917|FEM1B	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.3028564453125	2	531.303124	1060.5917	-0.63946	-0.00033975	0.20053	0.00010654	-0.43893	-0.00023321	531.303122702136	122.55	1.1892	121.18	120.86	122.05	-1.3666					53	23	4	0	0	0	0.37135	1	11562	11562		54.776	1.8396	1	244460			49891	6966	41355	41383	53841	53841					0.06382315994369492
RPISILVM	8	Oxidation (M)	_RPISILVM(Oxidation (M))_		RPISILVM(1)		RPISILVM(50)	0	0	1		ENST00000301919.8_1_11:105892354-105892552:-|nuORF	ENST00000301919.8_1_11:105892354-105892552:-|nuORF	ENST00000301919.8_1_11:105892354-105892552:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	472.7849426269531	2	472.783513	943.552473	1.3192	0.0006237	2.7359	0.0012935	4.0552	0.0019172	472.78465285146206	29.187	1.0318	26.478	26.18	27.212	-2.7097					38	21	3	0	0	0	0.66704	1	675	675		50.025	22.142	1	56287			49892	10195	41356	41384	53842	53842		292			0.07843892439154843
RPISWVSKR	9	Unmodified	_RPISWVSKR_					0	0	0		ENST00000503937.5_1_4:83740135-83740261:-|nuORF	ENST00000503937.5_1_4:83740135-83740261:-|nuORF	ENST00000503937.5_1_4:83740135-83740261:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	565.7989501953125	2	564.835457	1127.65636	-2.2876	-0.0012921	-1.4067	-0.00079456	-3.6943	-0.0020867	564.834655042456	35.872	0.79498	33.162	32.95	33.745	-2.7097					21	15	2	0	0	0	0.027462	1	1489	1489		37.159	4.3467	1	29794			49893	12870	41357	41385	53843	53843					0.09763935591035988
RPITCVGARR	10	Unmodified	_RPITCVGARR_					0	0	0		nc|ENSG00000065357|P23743-3|DGKA	nc|ENSG00000065357|P23743-3|DGKA	nc|ENSG00000065357|P23743-3|DGKA	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.8289184570312	2	564.824566	1127.63458	1.1597	0.00065501	4.264	0.0024084	5.4237	0.0030634	564.826863229148	56.435	1.8282	53.14	52.92	54.748	-3.2944					87	35	5	0	0	0	0.55109	1	3613	3613		47.96	5.0953	1	938020			49894	14884	41358	41386	53844	53844					0.07586807570805831
RPITDSLLDF	10	Unmodified	_RPITDSLLDF_					0	0	0		ENST00000416928.6_1_2:177041212-177041380:-|nuORF	ENST00000416928.6_1_2:177041212-177041380:-|nuORF	ENST00000416928.6_1_2:177041212-177041380:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	588.8201904296875	2	588.816596	1175.61864	-0.89638	-0.0005278	4.163	0.0024513	3.2666	0.0019234	588.8190198516028	73.646	2.497	70.25	69.543	72.04	-3.3961					118	51	4	0	0	0	0.48198	1	5739	5739		56.721	1.9447	1	1375100			49895	11615	41359	41387	53845	53845					0.037853798148944406
RPITDSPVL	9	Unmodified	_RPITDSPVL_					0	0	0		nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	MULTI-MSMS	OvCa9_classI_Rep2	2	499.28741455078125	2	499.287474	996.560395	-0.010404	-5.1946E-06	-0.93647	-0.00046757	-0.94688	-0.00047276	499.28693766889194	79.522	1.6653	77.812	76.789	78.454	-1.7103					98	32	4	0	0	0	0.14998	3	6702	6696;6702;6709		84.916	10.66	1	810360			49896	1095	41360	41388	53846;53847;53848	53847					0.061977429602734446
RPITDSPVL	9	Unmodified	_RPITDSPVL_					0	0	0		nc|ENSG00000038274|Q9NZL9-2|MAT2B;ENSG00000038274|ENST00000321757|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	nc|ENSG00000038274|Q9NZL9-2|MAT2B	MULTI-MSMS	OvCa9_classI_Rep3	3	499.2886962890625	2	499.287474	996.560395	0.0027377	1.3669E-06	-0.79579	-0.00039733	-0.79305	-0.00039596	499.28710705090845	79.766	2.0701	77.426	76.61	78.68	-2.3399					104	40	4	0	0	0	0.10502	4	4346	4321;4331;4339;4346		95.815	22.541	1	2058500			49897	1095	41360	41388	53849;53850;53851;53852	53852					0.061977429602734446
RPITERSLL	9	Unmodified	_RPITERSLL_					0	0	0		ENSG00000171055|ENST00000405912|FEZ2;nc|ENSG00000171055|Q9UHY8-2|FEZ2	ENSG00000171055|ENST00000405912|FEZ2	ENSG00000171055|ENST00000405912|FEZ2	MULTI-MSMS	OvCa9_classI_Rep2	2	542.8262939453125	2	542.827298	1083.64004	-0.34066	-0.00018492	-0.81862	-0.00044437	-1.1593	-0.00062929	542.827263378176	66.666	2.0779	63.97	63.617	65.694	-2.6958					125	41	6	0	0	0	0.28934	1	5175	5175		64.207	9.431	1	1203200			49898	7167	41361	41389	53853	53853					0.10156809634281672
RPITERSLL	9	Unmodified	_RPITERSLL_					0	0	0		ENSG00000171055|ENST00000405912|FEZ2;nc|ENSG00000171055|Q9UHY8-2|FEZ2	ENSG00000171055|ENST00000405912|FEZ2	ENSG00000171055|ENST00000405912|FEZ2	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.8281860351562	2	542.827298	1083.64004	0.70212	0.00038113	-1.7431	-0.00094622	-1.041	-0.00056509	542.8264338008486	67.583	1.3737	64.093	63.839	65.212	-3.4902					67	27	3	0	0	0	0.2422	2	4969	4961;4969		69.628	16.55	1	1462600			49899	7167	41361	41389	53854;53855	53855					0.10156809634281672
RPITERSLL	9	Unmodified	_RPITERSLL_					0	0	0		ENSG00000171055|ENST00000405912|FEZ2;nc|ENSG00000171055|Q9UHY8-2|FEZ2	ENSG00000171055|ENST00000405912|FEZ2	ENSG00000171055|ENST00000405912|FEZ2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	542.827298	1083.64004	1.185	0.00064327	-0.91878	-0.00049874	0.26626	0.00014453	542.8268620488261	66.985	0.65881	64.097	63.881	64.54	-2.8873	0.044078	0.00051292	NaN	69.628	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15761			49900	7167	41361	41389							0.10156809634281672
RPIVAPNVK	9	Unmodified	_RPIVAPNVK_					0	0	0			REV__tr|A0A553SHS5|A0A553SHS5_NIACIProteinadenylyltransferaseSelOOS=NialliacirculansOX=1397GN=selOPE=3SV=1	REV__tr|A0A553SHS5|A0A553SHS5_NIACIProteinadenylyltransferaseSelOOS=NialliacirculansOX=1397GN=selOPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.8069152832031	2	497.313826	992.613099	-1.2451	-0.00061921	0.63833	0.00031745	-0.60677	-0.00030175	497.31418025204636	50.74	0.86743	47.567	47.256	48.123	-3.1734					39	16	3	0	0	0	0.027455	1	2903	2903		51.335	15.717	1	257170	+		49901	29834	41362	41390	53856	53856					0.1164974581373599
RPIVAPNVK	9	Unmodified	_RPIVAPNVK_					0	0	0			REV__tr|A0A553SHS5|A0A553SHS5_NIACIProteinadenylyltransferaseSelOOS=NialliacirculansOX=1397GN=selOPE=3SV=1	REV__tr|A0A553SHS5|A0A553SHS5_NIACIProteinadenylyltransferaseSelOOS=NialliacirculansOX=1397GN=selOPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	497.313826	992.613099	-1.1667	-0.00058024	0.2732	0.00013586	-0.89355	-0.00044438	497.31403458785996	50.421	0.84151	47.627	47.281	48.123	-2.794	0.030244	-0.00025975	NaN	42.396	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52100	+		49902	29834	41362	41390							0.1164974581373599
RPIWPTRSY	9	Unmodified	_RPIWPTRSY_					0	0	0			REV__ENST00000499536.2_1_19:42813698-42813854:+|nuORF	REV__ENST00000499536.2_1_19:42813698-42813854:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	588.31884765625	2	588.31964	1174.62473	-0.14986	-8.8168E-05	-4.3422	-0.0025546	-4.4921	-0.0026428	588.3171667010001	47.453	2.2552	44.346	43.978	46.233	-3.1077					150	43	5	0	0	0	0.44568	1	2588	2588		47.657	3.2801	1	4526700	+		49903	26808	41363	41391	53857	53857					0.0443994283707525
RPIWSASPPR	10	Unmodified	_RPIWSASPPR_					0	0	0		ENSG00000275954|ENST00000620210|TBC1D3F;nc|ENSG00000275954|A6NER0|TBC1D3F;ENSG00000278599|ENST00000621587|TBC1D3E;ENSG00000278299|ENST00000622206|TBC1D3C;ENSG00000274933|ENST00000621034|TBC1D3I;ENSG00000274808|ENST00000611257|TBC1D3B;ENSG00000274611|ENST00000620215|TBC1D3;ENSG00000274512|ENST00000612727|TBC1D3L;ENSG00000274419|ENST00000616101|TBC1D3D;ENSG00000274226|ENST00000610350|TBC1D3H;ENSG00000273513|ENST00000620247|TBC1D3K;ENSG00000260287|ENST00000569055|TBC1D3G	ENSG00000275954|ENST00000620210|TBC1D3F	ENSG00000275954|ENST00000620210|TBC1D3F	MULTI-MSMS	OvCa9_classI_Rep3	3	583.823486328125	2	583.825089	1165.63563	-1.0594	-0.00061849	-0.19412	-0.00011333	-1.2535	-0.00073182	583.8248978197831	107.73	1.1962	106.5	106.18	107.38	-1.234					69	22	4	0	0	0	0.42082	1	7662	7662		65.465	12.529	1	399180			49904	9491	41364	41392	53858	53858					0.059433452113808016
RPIWSASPPR	10	Unmodified	_RPIWSASPPR_					0	0	0		ENSG00000275954|ENST00000620210|TBC1D3F;nc|ENSG00000275954|A6NER0|TBC1D3F;ENSG00000278599|ENST00000621587|TBC1D3E;ENSG00000278299|ENST00000622206|TBC1D3C;ENSG00000274933|ENST00000621034|TBC1D3I;ENSG00000274808|ENST00000611257|TBC1D3B;ENSG00000274611|ENST00000620215|TBC1D3;ENSG00000274512|ENST00000612727|TBC1D3L;ENSG00000274419|ENST00000616101|TBC1D3D;ENSG00000274226|ENST00000610350|TBC1D3H;ENSG00000273513|ENST00000620247|TBC1D3K;ENSG00000260287|ENST00000569055|TBC1D3G	ENSG00000275954|ENST00000620210|TBC1D3F	ENSG00000275954|ENST00000620210|TBC1D3F	MULTI-MSMS	OvCa9_classI_Rep4_	4	583.8261108398438	2	583.825089	1165.63563	-2.806	-0.0016382	0.9588	0.00055977	-1.8472	-0.0010785	583.8256020803484	108.26	1.2557	106.54	106.27	107.52	-1.7256					73	24	4	0	0	0	0.52439	1	9923	9923		51.193	0	1	542120			49905	9491	41364	41392	53859	53859					0.059433452113808016
RPIYFIHLL	9	Unmodified	_RPIYFIHLL_					0	0	0			REV__ENSG00000154589|ENST00000284818|LY96	REV__ENSG00000154589|ENST00000284818|LY96	MULTI-SECPEP	OvCa9_classI_Rep2	2	586.3689575195312	2	586.352951	1170.69135	0.37274	0.00021856	-2.5529	-0.0014969	-2.1801	-0.0012783	586.8531414647144	92.298	0.26306	91.13	90.919	91.182	-1.168					5	4	2	0	0	0	0.027462	1	8200	8200		50.025	10.772	1	4858.8	+		49906	20389	41365	41393	53860	53860					0.11283178399003191
RPIYFIHLL	9	Unmodified	_RPIYFIHLL_					0	0	0			REV__ENSG00000154589|ENST00000284818|LY96	REV__ENSG00000154589|ENST00000284818|LY96	MULTI-SECPEP	OvCa9_classI_Rep4_	4	586.3693237304688	2	586.352951	1170.69135	-0.71922	-0.00042172	-1.151	-0.0006749	-1.8702	-0.0010966	586.3529265997954	94.403	0.2995	91.935	91.86	92.16	-2.4685					6	5	2	0	0	0	0.027462	1	8276	8276		42.474	0	1	10954	+		49907	20389	41365	41393	53861	53861					0.11283178399003191
RPKAKNYEL	9	Unmodified	_RPKAKNYEL_					0	0	0			REV__nc|ENSG00000183091|P20929-4|NEB	REV__nc|ENSG00000183091|P20929-4|NEB	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.8186645507812	2	559.819473	1117.62439	1.8922	0.0010593	-1.9168	-0.0010731	-0.024592	-1.3767E-05	559.8182232305395	35.669	1.0488	32.82	32.54	33.589	-2.849					55	20	4	0	0	0	0.51865	1	1166	1166		40.778	3.6191	1	213120	+		49908	22341	41366	41394	53862	53862					0.07028523117219265
RPKALTQVL	9	Unmodified	_RPKALTQVL_					0	0	0		nc|ENSG00000116586|Q9Y2Q5-3|LAMTOR2;ENSG00000116586|ENST00000368305|LAMTOR2;ENST00000489664.1_1_1:156024680-156025387:+|nuORF;nc|ENSG00000116586|Q9Y2Q5-2|LAMTOR2	nc|ENSG00000116586|Q9Y2Q5-3|LAMTOR2	nc|ENSG00000116586|Q9Y2Q5-3|LAMTOR2	MULTI-MSMS	OvCa9_classI_Rep2	2	513.329345703125	2	513.326934	1024.63931	-0.72981	-0.00037463	-1.1237	-0.00057681	-1.8535	-0.00095145	513.3270041871727	67.528	2.3815	64.867	64.644	67.025	-2.661					66	47	2	0	0	0	0.16562	4	5272	5272;5278;5316;5323		82.241	25.519	1	1844100			49909	3188	41367	41395	53863;53864;53865;53866	53863					0.12798014985219197
RPKALTQVL	9	Unmodified	_RPKALTQVL_					0	0	0		nc|ENSG00000116586|Q9Y2Q5-3|LAMTOR2;ENSG00000116586|ENST00000368305|LAMTOR2;ENST00000489664.1_1_1:156024680-156025387:+|nuORF;nc|ENSG00000116586|Q9Y2Q5-2|LAMTOR2	nc|ENSG00000116586|Q9Y2Q5-3|LAMTOR2	nc|ENSG00000116586|Q9Y2Q5-3|LAMTOR2	MSMS	OvCa9_classI_Rep4_	4	513.3295288085938	2	513.326934	1024.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.8	1	65.31	64.81	65.81	-3.4902								0	0	0	0.17131	1	5120	5120		47.657	1.6851	1				49910	3188	41367	41395	53867	53867					0.12798014985219197
RPKALTQVL	9	Unmodified	_RPKALTQVL_					0	0	0		nc|ENSG00000116586|Q9Y2Q5-3|LAMTOR2;ENSG00000116586|ENST00000368305|LAMTOR2;ENST00000489664.1_1_1:156024680-156025387:+|nuORF;nc|ENSG00000116586|Q9Y2Q5-2|LAMTOR2	nc|ENSG00000116586|Q9Y2Q5-3|LAMTOR2	nc|ENSG00000116586|Q9Y2Q5-3|LAMTOR2	MSMS	OvCa9_classI_Rep4_	4	513.3306274414062	2	513.326934	1024.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.008	1	65.517	65.017	66.017	-3.4902								0	0	0	0.17408	1	5146	5146		42.864	11.334	1				49911	3188	41367	41395	53868	53868					0.12798014985219197
RPKANKCLA	9	Unmodified	_RPKANKCLA_					0	0	0		ENST00000562174.5_1_15:74927740-74927803:-|nuORF	ENST00000562174.5_1_15:74927740-74927803:-|nuORF	ENST00000562174.5_1_15:74927740-74927803:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.3020935058594	2	500.789661	999.564769	-2.345	-0.0011743	-4.3294	-0.0021681	-6.6744	-0.0033425	500.7866522942609	49.778	1.61	46.637	45.99	47.6	-3.1416					44	30	2	0	0	0	0.027462	1	2805	2805		30.504	7.4612	1	40307			49912	13767	41368	41396	53869	53869					0.06496928902186028
RPKANKCLA	9	Unmodified	_RPKANKCLA_					0	0	0		ENST00000562174.5_1_15:74927740-74927803:-|nuORF	ENST00000562174.5_1_15:74927740-74927803:-|nuORF	ENST00000562174.5_1_15:74927740-74927803:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	500.789661	999.564769	-1.3816	-0.00069189	-2.6784	-0.0013413	-4.06	-0.0020332	500.7883587004036	49.362	0.44442	46.602	46.473	46.918	-2.7603	-0.017419	0.00051964	NaN	16.473	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11185			49913	13767	41368	41396							0.06496928902186028
RPKAQPTTL	9	Unmodified	_RPKAQPTTL_					0	0	0		ENST00000514280.1_1_5:79646842-79647379:-|nuORF;nc|ENSG00000160563|Q6P2C8-2|MED27;ENSG00000160563|ENST00000292035|MED27	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.30120849609375	2	506.300916	1010.58728	-1.2558	-0.00063583	-0.024435	-1.2372E-05	-1.2803	-0.0006482	506.3007874663361	41.549	1.0744	38.569	38.336	39.41	-2.9804					39	20	2	0	0	0	0.1944	3	1868	1859;1868;1882		77.318	27.293	1	419050			49914	6071	41369	41397	53870;53871;53872	53871					0.08240851571463281
RPKAQPTTL	9	Unmodified	_RPKAQPTTL_					0	0	0		ENST00000514280.1_1_5:79646842-79647379:-|nuORF;nc|ENSG00000160563|Q6P2C8-2|MED27;ENSG00000160563|ENST00000292035|MED27	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	ENST00000514280.1_1_5:79646842-79647379:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	506.300916	1010.58728	0.32295	0.00016351	-0.53735	-0.00027206	-0.2144	-0.00010855	506.3004667028785	41.32	0.83706	38.61	38.339	39.177	-2.7097	0.020921	-0.00020517	NaN	77.318	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84124			49915	6071	41369	41397							0.08240851571463281
RPKDEVFSKY	10	Unmodified	_RPKDEVFSKY_					0	0	0		ENSG00000126561|ENST00000590949|STAT5A;nc|ENSG00000126561|P42229-2|STAT5A;ENST00000591556.1_1_17:40458135-40460407:+|nuORF	ENSG00000126561|ENST00000590949|STAT5A	ENSG00000126561|ENST00000590949|STAT5A	MULTI-SECPEP	OvCa9_classI_Rep2	2	634.8587036132812	2	634.83532	1267.65609	-0.53927	-0.00034235	0.92823	0.00058927	0.38895	0.00024692	634.8359433974351	96.636	0.63824	95.677	95.381	96.019	-0.95857					17	12	3	0	0	0	0.02711	1	8687	8687		82.75	13.123	1	21169			49916	3788	41370	41398	53873	53873					0.03296471080511765
RPKDEVFSKY	10	Unmodified	_RPKDEVFSKY_					0	0	0		ENSG00000126561|ENST00000590949|STAT5A;nc|ENSG00000126561|P42229-2|STAT5A;ENST00000591556.1_1_17:40458135-40460407:+|nuORF	ENSG00000126561|ENST00000590949|STAT5A	ENSG00000126561|ENST00000590949|STAT5A	MULTI-SECPEP	OvCa9_classI_Rep3	3	634.8596801757812	2	634.83532	1267.65609	-0.29655	-0.00018826	0.96054	0.00060979	0.664	0.00042153	634.8360873234134	97.551	1.0548	95.791	95.465	96.52	-1.7595					27	20	2	0	0	0	0.026494	1	6443	6443		77.318	0	1	28369			49917	3788	41370	41398	53874	53874					0.03296471080511765
RPKDEVFSKY	10	Unmodified	_RPKDEVFSKY_					0	0	0		ENSG00000126561|ENST00000590949|STAT5A;nc|ENSG00000126561|P42229-2|STAT5A;ENST00000591556.1_1_17:40458135-40460407:+|nuORF	ENSG00000126561|ENST00000590949|STAT5A	ENSG00000126561|ENST00000590949|STAT5A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	634.8593139648438	2	634.83532	1267.65609	0.55632	0.00035317	-0.43551	-0.00027648	0.12081	7.6693E-05	634.8353818915574	98.048	0.95831	95.67	95.216	96.175	-2.3786					25	18	2	0	0	0	0.026895	1	8660	8660		77.318	0	1	24922			49918	3788	41370	41398	53875	53875					0.03296471080511765
RPKDLWKRL	9	Unmodified	_RPKDLWKRL_					0	0	0		ENST00000582081.5_1_17:62541968-62590137:-|nuORF;ENSG00000108854|ENST00000262435|SMURF2	ENST00000582081.5_1_17:62541968-62590137:-|nuORF	ENST00000582081.5_1_17:62541968-62590137:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3689575195312	2	606.372207	1210.72986	-2.264	-0.0013728	-2.13	-0.0012916	-4.394	-0.0026644	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.69123	1	12489	12489		20.947	0	1	205770			49919	2684	41371	41399	53876	53876					0.13292484033490837
RPKDPNNLL	9	Unmodified	_RPKDPNNLL_					0	0	0		nc|ENSG00000197170|O00232-2|PSMD12;ENSG00000197170|ENST00000356126|PSMD12	nc|ENSG00000197170|O00232-2|PSMD12	nc|ENSG00000197170|O00232-2|PSMD12	MULTI-MSMS	OvCa9_classI_Rep2	2	533.8038940429688	2	533.803823	1065.59309	-1.8776	-0.0010023	1.4425	0.00077003	-0.43507	-0.00023224	533.8045260164237	55.812	1.8344	53.008	52.432	54.266	-2.804					100	36	4	0	0	0	0.14855	6	3903	3891;3897;3903;3909;3915;3928		85.161	24.189	1	896000			49920	8686	41372	41400	53877;53878;53879;53880;53881;53882	53879					0.06291950083118536
RPKDPNNLL	9	Unmodified	_RPKDPNNLL_					0	0	0		nc|ENSG00000197170|O00232-2|PSMD12;ENSG00000197170|ENST00000356126|PSMD12	nc|ENSG00000197170|O00232-2|PSMD12	nc|ENSG00000197170|O00232-2|PSMD12	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.8048706054688	2	533.803823	1065.59309	-0.99841	-0.00053296	0.41923	0.00022379	-0.57918	-0.00030917	533.8040282882739	56.339	2.2339	53.045	52.464	54.698	-3.2944					119	43	5	0	0	0	0.13504	5	3595	3584;3595;3607;3620;3631		87.696	15.819	1	2872100			49921	8686	41372	41400	53883;53884;53885;53886;53887	53884					0.06291950083118536
RPKDRVGL	8	Unmodified	_RPKDRVGL_					0	0	0		nc|ENSG00000164308|Q6P179-3|ERAP2;ENSG00000164308|ENST00000437043|ERAP2;ENST00000515387.1_1_5:96232124-96244694:+|nuORF;ENST00000513084.5_1_5:96237218-96245469:+|nuORF;ERAP2|p.A827Vfs*16|1|0.06|ENSG00000164308|chr5:96912761-96912762|-/T|frameshift_variant	nc|ENSG00000164308|Q6P179-3|ERAP2;ERAP2|p.A827Vfs*16|1|0.06|ENSG00000164308|chr5:96912761-96912762|-/T|frameshift_variant	nc|ENSG00000164308|Q6P179-3|ERAP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.78753662109375	2	470.787976	939.561398	-0.18553	-8.7345E-05	-1.1363	-0.00053496	-1.3218	-0.00062231	470.78744487463723	40.717	3.4773	37.763	37.112	40.589	-2.9541					147	66	5	0	0	0	0.7224	1	1789	1789		38.806	1.7777	1	6500500			49922	6444;14313	41373	41401	53888	53888					0.08920002119862147
RPKEKSLVL	9	Unmodified	_RPKEKSLVL_					0	0	0		ENST00000531912.1_1_11:612647-613379:-|nuORF;ENST00000528413.5_1_11:612647-613821:-|nuORF;ENST00000533182.5_1_11:612647-613950:-|nuORF;nc|ENSG00000185507|Q92985-2|IRF7;ENSG00000185507|ENST00000525445|IRF7;nc|ENSG00000185507|Q92985-4|IRF7	ENST00000531912.1_1_11:612647-613379:-|nuORF	ENST00000531912.1_1_11:612647-613379:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	535.3392944335938	2	535.340041	1068.66553	-1.5363	-0.00082246	1.039	0.00055624	-0.49729	-0.00026622	535.3405413095446	47.805	1.5411	45.095	44.588	46.129	-2.7097					85	30	4	0	0	0	0.27001	7	2943	2915;2920;2931;2937;2943;2949;2955		66.429	30.811	1	476770			49923	8258	41374	41402	53889;53890;53891;53892;53893;53894;53895	53893					0.13394284156697722
RPKEKSLVL	9	Unmodified	_RPKEKSLVL_					0	0	0		ENST00000531912.1_1_11:612647-613379:-|nuORF;ENST00000528413.5_1_11:612647-613821:-|nuORF;ENST00000533182.5_1_11:612647-613950:-|nuORF;nc|ENSG00000185507|Q92985-2|IRF7;ENSG00000185507|ENST00000525445|IRF7;nc|ENSG00000185507|Q92985-4|IRF7	ENST00000531912.1_1_11:612647-613379:-|nuORF	ENST00000531912.1_1_11:612647-613379:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.3411865234375	2	535.340041	1068.66553	-1.255	-0.00067184	0.66282	0.00035483	-0.59216	-0.00031701	535.340402065357	48.271	2.0484	45.163	44.287	46.335	-3.1077					108	39	4	0	0	0	0.42576	2	2653	2642;2653		49.536	13.918	1	578390			49924	8258	41374	41402	53896;53897	53897					0.13394284156697722
RPKEPNSTIL	10	Unmodified	_RPKEPNSTIL_					0	0	0		nc|ENSG00000071967|Q53TN4-3|CYBRD1;ENSG00000071967|ENST00000321348|CYBRD1	nc|ENSG00000071967|Q53TN4-3|CYBRD1	nc|ENSG00000071967|Q53TN4-3|CYBRD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	577.8314819335938	2	577.830037	1153.64552	-1.4654	-0.00084674	1.2165	0.00070292	-0.24889	-0.00014381	577.8305745007855	55.328	1.6243	52.034	51.597	53.221	-3.2944					92	31	4	0	0	0	0.16967	2	3467	3467;3477		99.013	38.719	1	919840			49925	1459	41375	41403	53898;53899	53898					0.07484488426098324
RPKERQQAY	9	Unmodified	_RPKERQQAY_					0	0	0			REV__ENST00000446634.1_1_7:143080130-143081191:+|nuORF	REV__ENST00000446634.1_1_7:143080130-143081191:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	588.318115234375	2	588.317628	1174.6207	-0.86515	-0.00050898	0.29962	0.00017627	-0.56553	-0.00033271	588.3178156551718	47.322	1.787	44.612	44.142	45.929	-2.7097					114	35	4	0	0	0	0.38969	1	2908	2908		52.937	12.159	1	1251100	+		49926	20629	41376	41404	53900	53900					0.04037853343379538
RPKGLEPVIVP	11	Unmodified	_RPKGLEPVIVP_					0	0	0			REV__ENSG00000196498|ENST00000405201|NCOR2	REV__ENSG00000196498|ENST00000405201|NCOR2	MULTI-MSMS	OvCa9_classI_Rep2	2	602.8750610351562	2	602.874248	1203.73394	-1.257	-0.00075783	0.78262	0.00047182	-0.47442	-0.00028601	602.8746995198144	103.48	1.8281	102.8	102.48	104.3	-0.68459					107	36	5	0	0	0	0.50928	2	9556	9556;9562		52.937	7.9145	1	1480000	+		49927	22837	41377	41405	53901;53902	53901					0.14022528736541062
RPKGLEPVIVP	11	Unmodified	_RPKGLEPVIVP_					0	0	0			REV__ENSG00000196498|ENST00000405201|NCOR2	REV__ENSG00000196498|ENST00000405201|NCOR2	MULTI-MSMS	OvCa9_classI_Rep4_	4	602.8740234375	2	602.874248	1203.73394	0.39799	0.00023994	-0.97219	-0.00058611	-0.57421	-0.00034617	602.8736249948932	105.04	1.9216	103.03	102.69	104.61	-2.0161					116	37	5	0	0	0	0.65063	1	9570	9570		40.058	0	1	1590400	+		49928	22837	41377	41405	53903	53903					0.14022528736541062
RPKGPAKTKGP	11	Unmodified	_RPKGPAKTKGP_					0	0	0		nc|ENSG00000188827|Q8IY92-2|SLX4;ENSG00000188827|ENST00000294008|SLX4	nc|ENSG00000188827|Q8IY92-2|SLX4	nc|ENSG00000188827|Q8IY92-2|SLX4	MULTI-SECPEP	OvCa9_classI_Rep3	3	568.8251953125	2	568.848564	1135.68258	0.79952	0.0004548	-3.8588	-0.0021951	-3.0593	-0.0017403	568.8460824001592	127.67	0.66647	126.58	126.36	127.02	-1.0933					18	12	2	0	0	0	0.026099	1	10064	10064		9.1829	0	1	9686.1			49929	8508	41378	41406	53904	53904					0.12016204762517191
RPKGQFPI	8	Unmodified	_RPKGQFPI_					0	0	0			REV__nc|ENSG00000196091|Q00872-7|MYBPC1;REV__nc|ENSG00000134571|Q14896-2|MYBPC3	REV__nc|ENSG00000134571|Q14896-2|MYBPC3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.2564392089844	2	471.779619	941.544686	0.2869	0.00013535	-0.05346	-2.5221E-05	0.23344	0.00011013	471.7792266807572	52.531	1.5599	49.323	48.692	50.252	-3.208					58	30	3	0	0	0	0.028476	1	3088	3088		42.474	1.9018	1	424450	+		49930	19212;29072	41379	41407	53905	53905					0.07157501233893981
RPKGQFPI	8	Unmodified	_RPKGQFPI_					0	0	0			REV__nc|ENSG00000196091|Q00872-7|MYBPC1;REV__nc|ENSG00000134571|Q14896-2|MYBPC3	REV__nc|ENSG00000134571|Q14896-2|MYBPC3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	471.779619	941.544686	-1.2806	-0.00060415	1.4662	0.00069171	0.18561	8.7565E-05	471.7800050840582	52.187	1.5321	49.374	48.848	50.38	-2.8129	0.025177	0.00071521	NaN	40.573	64	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120900	+		49931	19212;29072	41379	41407							0.07157501233893981
RPKHMLVV	8	Unmodified	_RPKHMLVV_					0	0	0		ENSG00000168944|ENST00000306467|CEP120;nc|ENSG00000168944|Q8N960-3|CEP120	ENSG00000168944|ENST00000306467|CEP120	ENSG00000168944|ENST00000306467|CEP120	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.298828125	2	490.297122	978.579691	0.94144	0.00046158	2.8774	0.0014108	3.8188	0.0018724	490.2983912260703	33.172	1.7371	30.477	30.103	31.84	-2.6954					75	34	3	0	0	0	0.69415	1	879	879		44.531	0.41427	1	606920			49932	6961	41380	41408	53906	53906					0.08954420770203342
RPKHPIKHQ	9	Unmodified	_RPKHPIKHQ_					0	0	0		CON__P02662	CON__P02662	CON__P02662	MULTI-MSMS	OvCa99_classI_Rep5	1	570.8397827148438	2	570.841074	1139.66759	0.086843	4.9573E-05	-0.20478	-0.0001169	-0.11794	-6.7324E-05	570.8408026111506	20.848	0.2336	20.848	20.741	20.974	0					7	4	2	0	0	0	0.56889	1	58	58		35.618	5.3006	1	70521		+	49933	616	41381	41409	53907	53907					0.10334757685154727
RPKHTRISEL	10	Unmodified	_RPKHTRISEL_					0	0	0		ENSG00000115461|ENST00000233813|IGFBP5	ENSG00000115461|ENST00000233813|IGFBP5	ENSG00000115461|ENST00000233813|IGFBP5	MULTI-MSMS	OvCa9_classI_Rep2	2	412.90985107421875	3	412.910561	1235.70985	1.4214	0.00058692	-1.2527	-0.00051726	0.1687	6.9657E-05	412.90997305484035	43.139	2.0837	40.43	40.016	42.099	-2.7097					93	41	4	0	0	0	0.43433	1	2401	2401		63.534	6.3851	1	208390			49934	3100	41382	41410	53908	53908					0.1014268830290348
RPKHTRISEL	10	Unmodified	_RPKHTRISEL_					0	0	0		ENSG00000115461|ENST00000233813|IGFBP5	ENSG00000115461|ENST00000233813|IGFBP5	ENSG00000115461|ENST00000233813|IGFBP5	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	412.910561	1235.70985	-0.58459	-0.00024138	0.519	0.0002143	-0.065589	-2.7082E-05	412.91072000125365	43.109	1.3847	40.101	39.853	41.238	-3.0074	-0.16419	0.0013952	NaN	63.534	64	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	192800			49935	3100	41382	41410							0.1014268830290348
RPKKFAFLTGL	11	Unmodified	_RPKKFAFLTGL_					0	0	0			REV__nc|ENSG00000159753|Q6F5E8-2|CARMIL2	REV__nc|ENSG00000159753|Q6F5E8-2|CARMIL2	MULTI-SECPEP	OvCa9_classI_Rep2	2	425.7751159667969	3	426.595802	1276.76558	-0.64125	-0.00027356	-2.9629	-0.001264	-3.6041	-0.0015375	426.5944658923292	69.41	1.0946	66.79	66.167	67.262	-2.6203					39	21	3	0	0	0	0.026079	1	5473	5473		19.263	3.342	1	36750	+		49936	20626	41383	41411	53909	53909					0.13826521490500454
RPKKFAFLTGL	11	Unmodified	_RPKKFAFLTGL_					0	0	0			REV__nc|ENSG00000159753|Q6F5E8-2|CARMIL2	REV__nc|ENSG00000159753|Q6F5E8-2|CARMIL2	MULTI-MATCH	OvCa9_classI_Rep3	3		3	426.595802	1276.76558	1.1664	0.0004976	-4.7814	-0.0020397	-3.6149	-0.0015421	426.59370056883665	69.7	0.99105	66.981	66.607	67.598	-2.7196	-0.00013955	-0.00099748	NaN	19.263	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44478	+		49937	20626	41383	41411							0.13826521490500454
RPKKFAFLTGL	11	Unmodified	_RPKKFAFLTGL_					0	0	0			REV__nc|ENSG00000159753|Q6F5E8-2|CARMIL2	REV__nc|ENSG00000159753|Q6F5E8-2|CARMIL2	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	426.595802	1276.76558	-0.4241	-0.00018092	-2.9488	-0.001258	-3.3729	-0.0014389	426.59467011545564	70.653	0.96423	67.171	66.738	67.702	-3.4812	0.19076	0.0013478	NaN	19.263	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50289	+		49938	20626	41383	41411							0.13826521490500454
RPKKPGQSF	9	Unmodified	_RPKKPGQSF_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MSMS	OvCa9_classI_Rep2	2	522.801025390625	2	522.801083	1043.58761	-0.60564	-0.00031663	0.2391	0.000125	-0.36654	-0.00019163	522.8010421976496	33.203	1.3901	30.493	30.272	31.662	-2.7097					70	27	4	0	0	0	0.16562	4	1161	1161;1167;1174;1205		82.241	23.459	1	560900			49939	6353	41384	41412	53910;53911;53912;53913	53910					0.0675627129132863
RPKKPGQSF	9	Unmodified	_RPKKPGQSF_					0	0	0		nc|ENSG00000163714|O15042-2|U2SURP;ENSG00000163714|ENST00000473835|U2SURP;nc|ENSG00000163714|O15042-3|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	nc|ENSG00000163714|O15042-2|U2SURP	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.8011474609375	2	522.801083	1043.58761	-0.5616	-0.00029361	0.20012	0.00010462	-0.36148	-0.00018898	522.8011306629728	21.387	1.7669	20.049	19.77	21.537	-1.3386					100	36	4	0	0	0	0.041116	6	174	151;162;174;186;198;224		125.81	54.518	1	978010			49940	6353	41384	41412	53914;53915;53916;53917;53918;53919	53916					0.0675627129132863
RPKKRARQFPS	11	Unmodified	_RPKKRARQFPS_					0	0	0			REV__ENSG00000055609|ENST00000262189|KMT2C	REV__ENSG00000055609|ENST00000262189|KMT2C	MULTI-MSMS	OvCa9_classI_Rep2	2	457.6081848144531	3	457.609105	1369.80549	-3.7462	-0.0017143	1.254	0.00057385	-2.4922	-0.0011405	457.60971240856696	157.06	2.9403	156.83	155.39	158.33	-0.22696					220	89	3	0	0	0	0.71582	1	15965	15965		24.232	5.7008	1	46638	+		49941	16712	41385	41413	53920	53920					0.1353746121376389
RPKLPEDPLL	10	Unmodified	_RPKLPEDPLL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3516235351562	2	589.350606	1176.68666	0.83977	0.00049492	-1.4765	-0.00087016	-0.6367	-0.00037524	589.3496588808903	87.347	1.5748	85.916	85.593	87.168	-1.4311					104	31	5	0	0	0	0.20536	5	7630	7611;7618;7624;7630;7636		93.598	27.168	1	1092400			49942	7034	41386	41414	53921;53922;53923;53924;53925	53924					0.10538249465548688
RPKLPEDPLL	10	Unmodified	_RPKLPEDPLL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3505859375	2	589.350606	1176.68666	-1.5955	-0.00094032	0.64854	0.00038221	-0.94698	-0.0005581	589.3508266694524	88.435	1.7909	86.304	85.906	87.697	-2.1309					124	35	5	0	0	0	0.24109	6	5401	5370;5375;5381;5387;5393;5401		88.177	13.134	1	1379700			49943	7034	41386	41414	53926;53927;53928;53929;53930;53931	53931					0.10538249465548688
RPKLPEDPLL	10	Unmodified	_RPKLPEDPLL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3515014648438	2	589.350606	1176.68666	-1.1546	-0.00068047	0.46938	0.00027663	-0.68523	-0.00040384	589.3507829555228	88.833	1.6912	86.23	85.832	87.523	-2.6027					106	33	5	0	0	0	0.22511	3	7580	7580;7591;7628		90.601	24.798	1	1268100			49944	7034	41386	41414	53932;53933;53934	53932					0.10538249465548688
RPKLPSRGRVL	11	Unmodified	_RPKLPSRGRVL_					0	0	0		ENST00000553961.1_1_14:69446800-69446896:+|nuORF	ENST00000553961.1_1_14:69446800-69446896:+|nuORF	ENST00000553961.1_1_14:69446800-69446896:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	426.9430236816406	3	426.942084	1277.80442	0.74077	0.00031627	-1.3177	-0.00056258	-0.57694	-0.00024632	426.94149785984115	79.39	2.4757	77.05	76.514	78.99	-2.3399					139	48	4	0	0	0	0.72297	1	4287	4287		21.78	0.94327	1	472050			49945	13628	41387	41415	53935	53935					0.17663246844881542
RPKLQVIT	8	Unmodified	_RPKLQVIT_					0	0	0			REV__nc|ENSG00000127603|Q9UPN3|MACF1;REV__MACF1-CMTM4|1|fusion	REV__nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OvCa9_classI_Rep3	3	477.80792236328125	2	477.808377	953.6022	1.9488	0.00093115	-1.9172	-0.00091603	0.031633	1.5115E-05	477.8073051342162	64.159	1.1625	61.166	60.836	61.999	-2.9933					49	22	3	0	0	0	0.7549	1	2465	2465		24.203	0	1	160040	+		49946	18823;28637	41388	41416	53936	53936					0.12354343439449167
RPKLSLLLL	9	Unmodified	_RPKLSLLLL_					0	0	0		ENST00000335509.10_1_12:113734025-113734265:+|nuORF	ENST00000335509.10_1_12:113734025-113734265:+|nuORF	ENST00000335509.10_1_12:113734025-113734265:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.3056640625	2	526.863152	1051.71175	-2.0596	-0.0010852	1.8635	0.00098184	-0.19609	-0.00010332	526.863935611386	50.502	0.51951	47.36	47.132	47.651	-3.1416					19	9	3	0	0	0	0.027462	1	2930	2930		23.042	3.6825	1	25996			49947	10498	41389	41417	53937	53937					0.18796349058811757
RPKLSLLLL	9	Unmodified	_RPKLSLLLL_					0	0	0		ENST00000335509.10_1_12:113734025-113734265:+|nuORF	ENST00000335509.10_1_12:113734025-113734265:+|nuORF	ENST00000335509.10_1_12:113734025-113734265:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	526.863152	1051.71175	-1.2844	-0.00067673	1.1104	0.00058503	-0.17405	-9.1699E-05	526.8636099465806	49.977	0.59722	47.183	46.933	47.531	-2.794	-0.088658	-0.00024136	NaN	23.042	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22484			49948	10498	41389	41417							0.18796349058811757
RPKLSSPAL	9	Unmodified	_RPKLSSPAL_					0	0	0		ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.79888916015625	2	484.798009	967.581465	0.30051	0.00014569	-0.83504	-0.00040482	-0.53453	-0.00025914	484.7974903201912	59.862	0.98339	56.432	56.111	57.095	-3.43					48	19	3	0	0	0	0.16562	1	4043	4043		82.241	13.454	1	535580			49949	2061	41390	41418	53938	53938					0.09637753059791976
RPKLSSPAL	9	Unmodified	_RPKLSSPAL_					0	0	0		ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	ENSG00000100393|ENST00000263253|EP300	MULTI-MATCH	OvCa9_classI_Rep2	2		2	484.798009	967.581465	-0.37103	-0.00017987	0.88108	0.00042714	0.51005	0.00024727	484.79808575768595	59.116	1.6489	56.336	55.789	57.438	-2.7801	-0.048037	0.0014091	NaN	82.241	65	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200940			49950	2061	41390	41418							0.09637753059791976
RPKNFKKIH	9	Unmodified	_RPKNFKKIH_					0	0	0		ENST00000583220.5_1_18:20716467-20776816:+|nuORF;nc|ENSG00000134508|Q8TDN4-2|CABLES1;ENSG00000134508|ENST00000256925|CABLES1	ENST00000583220.5_1_18:20716467-20776816:+|nuORF	ENST00000583220.5_1_18:20716467-20776816:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3558349609375	2	584.359099	1166.70365	-2.312	-0.0013511	-2.2933	-0.0013401	-4.6053	-0.0026912	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.65476	1	14649	14649		25.45	0.93098	1	180810			49951	4304	41391	41419	53939	53939					0.1269621486203505
RPKPEEKR	8	Unmodified	_RPKPEEKR_					0	0	0		ENSG00000160886|ENST00000292430|LY6K;ENST00000522591.1_2_8:143784477-143784786:+|nuORF	ENSG00000160886|ENST00000292430|LY6K	ENSG00000160886|ENST00000292430|LY6K	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.3048095703125	2	520.30399	1038.59343	-1.4178	-0.00073771	0.95783	0.00049836	-0.46001	-0.00023935	520.3044588246823	43.464	1.4296	40.457	40.115	41.545	-3.0074					74	27	3	0	0	0	0.73205	1	2077	2077		35.618	0	1	1834700			49952	6101	41392	41420	53940	53940					0.0756736980297319
RPKPLVPKF	9	Unmodified	_RPKPLVPKF_					0	0	0			REV__chr10:100998410-101002497|412|11.71|0.72|4.02|+|ENST00000429732|LZTS2,LZTS2	REV__chr10:100998410-101002497|412|11.71|0.72|4.02|+|ENST00000429732|LZTS2,LZTS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.3466186523438	2	541.347669	1080.68079	-0.94096	-0.00050939	-3.9982	-0.0021644	-4.9392	-0.0026738	541.3456613983815	82.909	2.3512	80.226	79.684	82.036	-2.683					196	48	7	0	0	0	0.46377	1	6865	6865		45.952	3.5558	1	3004400	+		49953	15840	41393	41421	53941	53941					0.1436719574453491
RPKPSSSPVIF	11	Unmodified	_RPKPSSSPVIF_					0	0	0		nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;PCBP2-PFDN5|1|fusion;PCBP2-PFDN5|2|fusion;ENST00000547987.2_1_12:53854819-53861193:+|nuORF;PCBP2-AMHR2|6|fusion;PCBP2-AMHR2|4|fusion;PCBP2-AMHR2|7|fusion;PCBP2-AMHR2|5|fusion;PCBP2-AMHR2|1|fusion;PCBP2-AMHR2|3|fusion;PCBP2-AMHR2|2|fusion	nc|ENSG00000197111|Q15366-7|PCBP2;PCBP2-AMHR2|6|fusion	nc|ENSG00000197111|Q15366-7|PCBP2	MULTI-MSMS	OvCa9_classI_Rep2	2	607.8482055664062	2	607.84823	1213.68191	-1.1955	-0.0007267	0.64342	0.0003911	-0.55211	-0.0003356	607.848632390518	68.868	2.6147	66.248	65.918	68.533	-2.6203					154	51	5	0	0	0	0.079434	10	5446	5435;5441;5446;5451;5458;5464;5470;5477;5483;5490		101.46	41.342	1	2559300			49954	8677;15477	41394	41422	53942;53943;53944;53945;53946;53947;53948;53949;53950;53951	53944					0.0836136532279852
RPKPSSSPVIF	11	Unmodified	_RPKPSSSPVIF_					0	0	0		nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;PCBP2-PFDN5|1|fusion;PCBP2-PFDN5|2|fusion;ENST00000547987.2_1_12:53854819-53861193:+|nuORF;PCBP2-AMHR2|6|fusion;PCBP2-AMHR2|4|fusion;PCBP2-AMHR2|7|fusion;PCBP2-AMHR2|5|fusion;PCBP2-AMHR2|1|fusion;PCBP2-AMHR2|3|fusion;PCBP2-AMHR2|2|fusion	nc|ENSG00000197111|Q15366-7|PCBP2;PCBP2-AMHR2|6|fusion	nc|ENSG00000197111|Q15366-7|PCBP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	607.8486938476562	2	607.84823	1213.68191	-0.23333	-0.00014183	-0.23247	-0.0001413	-0.4658	-0.00028313	607.8480930303093	69.995	2.4296	66.514	66.201	68.631	-3.4812					153	49	5	0	0	0	0.12738	5	5253	5253;5263;5275;5288;5300		91.265	46.888	1	2991700			49955	8677;15477	41394	41422	53952;53953;53954;53955;53956	53952					0.0836136532279852
RPKPSSSPVIF	11	Unmodified	_RPKPSSSPVIF_					0	0	0		nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547717.1_1_12:53848575-53861193:+|nuORF;PCBP2-PFDN5|1|fusion;PCBP2-PFDN5|2|fusion;ENST00000547987.2_1_12:53854819-53861193:+|nuORF;PCBP2-AMHR2|6|fusion;PCBP2-AMHR2|4|fusion;PCBP2-AMHR2|7|fusion;PCBP2-AMHR2|5|fusion;PCBP2-AMHR2|1|fusion;PCBP2-AMHR2|3|fusion;PCBP2-AMHR2|2|fusion	nc|ENSG00000197111|Q15366-7|PCBP2;PCBP2-AMHR2|6|fusion	nc|ENSG00000197111|Q15366-7|PCBP2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	607.84823	1213.68191	2.2919	0.0013931	-1.4007	-0.00085142	0.89115	0.00054169	607.847261070518	69.201	0.79861	66.386	66.112	66.911	-2.8144	0.0037517	-0.001839	NaN	101.46	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57971			49956	8677;15477	41394	41422							0.0836136532279852
RPKPWHKLSL	10	Unmodified	_RPKPWHKLSL_					0	0	0		ENSG00000111249|ENST00000261726|CUX2;nc|ENSG00000257923|P39880-6|CUX1;nc|ENSG00000257923|P39880-4|CUX1;nc|ENSG00000257923|P39880-5|CUX1;nc|ENSG00000257923|P39880-2|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1	ENSG00000111249|ENST00000261726|CUX2;nc|ENSG00000257923|P39880-6|CUX1	nc|ENSG00000257923|P39880-6|CUX1	MULTI-MSMS	OvCa9_classI_Rep3	3	421.255615234375	3	421.25578	1260.74551	2.0308	0.00085549	-1.891	-0.00079658	0.13984	5.8908E-05	421.25488377471635	64.14	1.1115	61.147	60.786	61.898	-2.9933					53	21	3	0	0	0	0.49595	3	2460	2460;2467;2474		54.722	22.688	1	105900			49957	9476;2815	41395	41423	53957;53958;53959	53957					0.12556770550554575
RPKQEKAFSL	10	Unmodified	_RPKQEKAFSL_					0	0	0		ENSG00000147649|ENST00000336273|MTDH	ENSG00000147649|ENST00000336273|MTDH	ENSG00000147649|ENST00000336273|MTDH	MULTI-MSMS	OvCa9_classI_Rep2	2	401.899658203125	3	401.899662	1202.67716	0.43726	0.00017574	-0.090751	-3.6473E-05	0.34651	0.00013926	401.8994230610732	50.361	1.934	47.567	46.686	48.62	-2.794					100	38	5	0	0	0	0.65826	1	3235	3235		35.178	5.6275	1	232540			49958	5369	41396	41424	53960	53960					0.08392481180044342
RPKQIASL	8	Unmodified	_RPKQIASL_					0	0	0		ENST00000544612.5_1_11:94230041-94230104:+|nuORF	ENST00000544612.5_1_11:94230041-94230104:+|nuORF	ENST00000544612.5_1_11:94230041-94230104:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.78582763671875	2	456.784902	911.55525	0.26656	0.00012176	-0.97889	-0.00044714	-0.71234	-0.00032538	456.7843069758037	47.611	1.4708	44.504	44.133	45.604	-3.1077					67	28	3	0	0	0	0.58851	1	2590	2590		66.429	4.3219	1	320350			49959	13509	41397	41425	53961	53961					0.09593483888306764
RPKQIASL	8	Unmodified	_RPKQIASL_					0	0	0		ENST00000544612.5_1_11:94230041-94230104:+|nuORF	ENST00000544612.5_1_11:94230041-94230104:+|nuORF	ENST00000544612.5_1_11:94230041-94230104:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	456.784902	911.55525	0.4346	0.00019852	-1.5283	-0.00069811	-1.0937	-0.00049959	456.7843753653986	47.359	1.1877	44.649	44.242	45.43	-2.7097	0.072752	-0.00039955	NaN	66.429	53	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92990			49960	13509	41397	41425							0.09593483888306764
RPKQLPVTR	9	Unmodified	_RPKQLPVTR_					0	0	0			REV__nc|ENSG00000091262|O95255-3|ABCC6	REV__nc|ENSG00000091262|O95255-3|ABCC6	MULTI-MSMS	OvCa9_classI_Rep3	3	547.8424682617188	2	547.843282	1093.67201	-0.1914	-0.00010486	-1.5293	-0.00083784	-1.7207	-0.0009427	547.8423180016147	71.547	3.227	68.945	68.229	71.456	-2.6023					126	61	3	0	0	0	0.61365	1	3341	3341		30.318	2.4355	1	1856100	+		49961	28756	41398	41426	53962	53962					0.12892222108075657
RPKRGRKK	8	Unmodified	_RPKRGRKK_					0	0	0			REV__ENSG00000152217|ENST00000649279|SETBP1	REV__ENSG00000152217|ENST00000649279|SETBP1	MULTI-MSMS	OvCa9_classI_Rep2	2	513.3443603515625	2	513.343784	1024.67301	2.252	0.0011561	0.14863	7.63E-05	2.4007	0.0012324	513.3436996113568	27.778	1.0347	25.068	24.871	25.906	-2.7097					48	22	3	0	0	0	0.74394	1	544	544		13.775	0	1	181780	+		49962	20274	41399	41427	53963	53963					0.16166481267646304
RPKRGVGL	8	Unmodified	_RPKRGVGL_					0	0	0		ENST00000251101.11_1_18:691232-697243:-|nuORF;nc|ENSG00000132199|Q7L5Y1-3|ENOSF1	ENST00000251101.11_1_18:691232-697243:-|nuORF	ENST00000251101.11_1_18:691232-697243:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	441.7852478027344	2	441.785236	881.555919	-0.37742	-0.00016674	0.51159	0.00022601	0.13417	5.9274E-05	441.78528087802897	21.53	1.3162	20.191	19.864	21.18	-1.3386					43	25	3	0	0	0	0.75661	1	178	178		19.36	0	1	101430			49963	9795	41400	41428	53964	53964					0.11040323328040813
RPKRHSATA	9	Unmodified	_RPKRHSATA_					0	0	0			REV__ENST00000581737.1_1_17:80202659-80207035:-|nuORF	REV__ENST00000581737.1_1_17:80202659-80207035:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	512.2943725585938	2	512.293956	1022.57336	-0.84463	-0.0004327	0.48834	0.00025017	-0.35629	-0.00018253	512.2940516724474	26.618	0.49971	26.618	26.442	26.942	0					19	9	3	0	0	0	0.51865	1	709	709		40.778	10.275	1	153260	+		49964	27803	41401	41429	53965	53965					0.06297618863038679
RPKRKHGT	8	Unmodified	_RPKRKHGT_					0	0	0		nc|ENSG00000007264|P42679-3|MATK;ENSG00000007264|ENST00000310132|MATK;nc|ENSG00000007264|P42679-2|MATK	nc|ENSG00000007264|P42679-3|MATK	nc|ENSG00000007264|P42679-3|MATK	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.2989196777344	2	490.299042	978.583531	0.94143	0.00046158	-1.0384	-0.00050914	-0.09699	-4.7554E-05	490.2983912260703	33.172	1.7371	30.477	30.103	31.84	-2.6954					75	34	3	0	0	0	0.60331	1	866	866		63.306	3.0123	1	606920			49965	898	41402	41430	53966	53966					0.09338226588272391
RPKRNLSR	8	Unmodified	_RPKRNLSR_					0	0	0		nc|ENSG00000101222|Q9Y4P9-2|SPEF1;ENST00000471499.5_1_20:3759529-3761934:-|nuORF;ENSG00000101222|ENST00000379756|SPEF1	nc|ENSG00000101222|Q9Y4P9-2|SPEF1	nc|ENSG00000101222|Q9Y4P9-2|SPEF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.3285522460938	2	513.817599	1025.62064	0.058196	2.9902E-05	-2.5217	-0.0012957	-2.4635	-0.0012658	514.3175812308024	70.803	0.31294	70.803	70.641	70.954	0					13	7	2	0	0	0	0.028476	1	6797	6797		23.042	2.5607	1	464180			49966	2155	41403	41431	53967	53967					0.10885898134006311
RPKRPANQF	9	Unmodified	_RPKRPANQF_					0	0	0		ENSG00000204435|ENST00000375882|CSNK2B;chr6:31669172-31669328|429|26.7|0.0|21.35|+|ENST00000677536|CSNK2B,CSNK2B	ENSG00000204435|ENST00000375882|CSNK2B	ENSG00000204435|ENST00000375882|CSNK2B	MULTI-MSMS	OvCa9_classI_Rep2	2	557.31689453125	2	557.317432	1112.62031	-1.9914	-0.0011099	1.5109	0.00084204	-0.48054	-0.00026782	557.3181775816473	36.131	1.4315	33.421	33.152	34.583	-2.7097					66	28	4	0	0	0	0.36502	2	1511	1511;1515		55.504	23.974	1	384370			49967	510	41404	41432	53968;53969	53968					0.06850478414162353
RPKRSFAS	8	Unmodified	_RPKRSFAS_					0	0	0			REV__ENSG00000140548|ENST00000268154|ZNF710	REV__ENSG00000140548|ENST00000268154|ZNF710	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.7723693847656	2	474.772326	947.530098	1.4458	0.0006864	-1.8304	-0.00086903	-0.38467	-0.00018263	474.7714054184023	37.259	2.3363	34.367	33.695	36.031	-2.8925					116	46	4	0	0	0	0.72896	1	1324	1324		37.159	5.2042	1	1197600	+		49968	19685	41405	41433	53970	53970					0.05423429085760745
RPKSAPRL	8	Unmodified	_RPKSAPRL_					0	0	0			REV__ENST00000460191.1_1_1:94344628-94344730:-|nuORF	REV__ENST00000460191.1_1_1:94344628-94344730:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.7918701171875	2	462.790518	923.566484	-1.4447	-0.00066857	1.1646	0.00053898	-0.28003	-0.0001296	462.7910347179334	54.901	2.0388	51.654	50.979	53.017	-3.2474					62	39	2	0	0	0	0.71267	1	3418	3418		40.778	6.6056	1	660980	+		49969	26075	41406	41434	53971	53971					0.1016430598245961
RPKSAPRL	8	Unmodified	_RPKSAPRL_					0	0	0			REV__ENST00000460191.1_1_1:94344628-94344730:-|nuORF	REV__ENST00000460191.1_1_1:94344628-94344730:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	462.790518	923.566484	-1.1751	-0.0005438	1.0735	0.00049681	-0.10155	-4.6995E-05	462.7909269494787	54.499	1.8443	51.685	51.025	52.869	-2.8139	0.015542	-3.698E-05	NaN	40.778	62	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	256560	+		49970	26075	41406	41434							0.1016430598245961
RPKSAPRL	8	Unmodified	_RPKSAPRL_					0	0	0			REV__ENST00000460191.1_1_1:94344628-94344730:-|nuORF	REV__ENST00000460191.1_1_1:94344628-94344730:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	462.790518	923.566484	-1.4447	-0.00066857	1.1646	0.00053898	-0.28003	-0.0001296	462.7910347179334	54.901	2.0388	51.654	50.979	53.017	-3.2474	-0.015542	4.7353E-05	NaN	40.778	62	39	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	660980	+		49971	26075	41406	41434							0.1016430598245961
RPKTRRVAP	9	Unmodified	_RPKTRRVAP_					0	0	0		ENSG00000145386|ENST00000274026|CCNA2	ENSG00000145386|ENST00000274026|CCNA2	ENSG00000145386|ENST00000274026|CCNA2	MULTI-MSMS	OvCa9_classI_Rep2	2	540.8413696289062	2	540.841074	1079.66759	-0.50813	-0.00027482	0.34342	0.00018574	-0.16471	-8.9083E-05	540.8411675935439	31.395	0.98717	28.685	28.494	29.481	-2.7097					43	19	3	0	0	0	0.7044	1	977	977		16.473	0.83134	1	162100			49972	5220	41407	41435	53972	53972					0.1309475768516677
RPKTRVPY	8	Unmodified	_RPKTRVPY_					0	0	0		RNF168|p.L448Yfs*40|1|0.04|ENSG00000163961|chr3:196472192-196472192|A/-|frameshift_variant;ENSG00000163961|ENST00000318037|RNF168	RNF168|p.L448Yfs*40|1|0.04|ENSG00000163961|chr3:196472192-196472192|A/-|frameshift_variant	RNF168|p.L448Yfs*40|1|0.04|ENSG00000163961|chr3:196472192-196472192|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	508.80377197265625	2	508.803626	1015.5927	-0.66266	-0.00033716	0.39402	0.00020048	-0.26864	-0.00013669	508.8039978631368	74.675	1.1236	72.264	71.747	72.87	-2.4106					60	22	5	0	0	0	0.73766	1	3725	3725		32.812	2.3088	1	1714500			49973	6389	41408	41436	53973	53973					0.08552575153930775
RPKTVRDTLL	10	Unmodified	_RPKTVRDTLL_					0	0	0		IRF2BP2|p.P414Ffs*4|1|0.12|ENSG00000168264|chr1:234607661-234607662|-/AAAA|frameshift_variant;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2	IRF2BP2|p.P414Ffs*4|1|0.12|ENSG00000168264|chr1:234607661-234607662|-/AAAA|frameshift_variant	IRF2BP2|p.P414Ffs*4|1|0.12|ENSG00000168264|chr1:234607661-234607662|-/AAAA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	400.24700927734375	3	400.247062	1197.71936	0.8134	0.00032556	-0.72327	-0.00028949	0.090132	3.6075E-05	400.24675032608036	56.071	2.0809	53.267	52.83	54.911	-2.804					98	41	3	0	0	0	0.48398	5	3927	3922;3927;3939;3945;3959		56.434	8.5284	1	943420			49974	6884	41409	41437	53974;53975;53976;53977;53978	53975					0.12840456588423876
RPKTVRDTLL	10	Unmodified	_RPKTVRDTLL_					0	0	0		IRF2BP2|p.P414Ffs*4|1|0.12|ENSG00000168264|chr1:234607661-234607662|-/AAAA|frameshift_variant;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2	IRF2BP2|p.P414Ffs*4|1|0.12|ENSG00000168264|chr1:234607661-234607662|-/AAAA|frameshift_variant	IRF2BP2|p.P414Ffs*4|1|0.12|ENSG00000168264|chr1:234607661-234607662|-/AAAA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	599.8667602539062	2	599.866954	1197.71936	-1.3286	-0.000797	1.2476	0.00074837	-0.081056	-4.8623E-05	599.8675999680742	56.1	1.4372	53.296	52.928	54.366	-2.804					81	28	4	0	0	0	0.41036	2	3948	3941;3948		54.776	0	1	437740			49975	6884	41409	41437	53979;53980	53980					0.12840456588423876
RPKTVRDTLL	10	Unmodified	_RPKTVRDTLL_					0	0	0		IRF2BP2|p.P414Ffs*4|1|0.12|ENSG00000168264|chr1:234607661-234607662|-/AAAA|frameshift_variant;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2	IRF2BP2|p.P414Ffs*4|1|0.12|ENSG00000168264|chr1:234607661-234607662|-/AAAA|frameshift_variant	IRF2BP2|p.P414Ffs*4|1|0.12|ENSG00000168264|chr1:234607661-234607662|-/AAAA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	400.2491760253906	3	400.247062	1197.71936	2.3259	0.00093092	-2.5417	-0.0010173	-0.21579	-8.6368E-05	400.2459940700074	56.884	1.8279	53.539	53.171	54.999	-3.3449					107	35	5	0	0	0	0.50873	2	3667	3667;3680		53.089	15.277	1	994040			49976	6884	41409	41437	53981;53982	53981					0.12840456588423876
RPKVPDQSV	9	Unmodified	_RPKVPDQSV_					0	0	0		ENSG00000140450|ENST00000268042|ARRDC4	ENSG00000140450|ENST00000268042|ARRDC4	ENSG00000140450|ENST00000268042|ARRDC4	MULTI-MSMS	OvCa9_classI_Rep2	2	513.2901611328125	2	513.290548	1024.56654	-0.033763	-1.733E-05	0.15354	7.881E-05	0.11978	6.148E-05	513.2901533663938	45.381	1.2982	42.672	42.298	43.596	-2.7097					46	25	3	0	0	0	0.12515	2	2641	2641;2647		90.37	24.521	1	171170			49977	4840	41410	41438	53983;53984	53983					0.055242611917947215
RPKVPDQSV	9	Unmodified	_RPKVPDQSV_					0	0	0		ENSG00000140450|ENST00000268042|ARRDC4	ENSG00000140450|ENST00000268042|ARRDC4	ENSG00000140450|ENST00000268042|ARRDC4	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.2902221679688	2	513.290548	1024.56654	-1.1671	-0.00059907	0.96429	0.00049496	-0.20282	-0.00010411	513.290720664515	45.574	1.2023	42.535	42.23	43.432	-3.0385					55	22	4	0	0	0	0.10421	2	2335	2335;2348		96.034	29.604	1	782300			49978	4840	41410	41438	53985;53986	53985					0.055242611917947215
RPKVSVKVL	9	Unmodified	_RPKVSVKVL_					0	0	0			REV__ENST00000515417.5_1_5:180666387-180668514:-|nuORF	REV__ENST00000515417.5_1_5:180666387-180668514:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.32861328125	2	513.345126	1024.6757	1.1107	0.00057015	-0.10938	-5.6149E-05	1.0013	0.000514	513.3464361962984	67.802	0.20074	64.915	64.789	64.99	-2.8873					5	3	2	0	0	0	0.027402	1	2891	2891		56.721	0	1	5792.7	+		49979	26827	41411	41439	53987	53987					0.16434891881931435
RPKYQFLSL	9	Unmodified	_RPKYQFLSL_					0	0	0		ENSG00000105928|ENST00000645220|GSDME;ENST00000493723.5_1_7:24756537-24789393:-|nuORF;ENST00000473990.1_1_7:24784179-24789393:-|nuORF	ENSG00000105928|ENST00000645220|GSDME	ENSG00000105928|ENST00000645220|GSDME	MULTI-MSMS	OvCa9_classI_Rep2	2	576.3310546875	2	576.332216	1150.64988	-0.82063	-0.00047296	0.69122	0.00039837	-0.12942	-7.4587E-05	576.3326121769085	93.556	1.4326	92.388	92.105	93.538	-1.168					80	27	4	0	0	0	0.51865	1	8357	8357		40.778	7.9657	1	407380			49980	2512	41412	41440	53988	53988					0.08057997639662062
RPKYTSNVVC	10	Unmodified	_RPKYTSNVVC_					0	0	0		ENSG00000204687|ENST00000377127|MAS1L	ENSG00000204687|ENST00000377127|MAS1L	ENSG00000204687|ENST00000377127|MAS1L	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8023681640625	2	583.802965	1165.59138	0.97841	0.0005712	-0.94752	-0.00055316	0.03089	1.8034E-05	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.73063	1	1354	1354		27.047	4.0048	1	155970			49981	9019	41413	41441	53989	53989					0.015205730028583275
RPLAARPGL	9	Unmodified	_RPLAARPGL_					0	0	0		ENST00000334801.7_1_11:118781071-118781260:-|nuORF	ENST00000334801.7_1_11:118781071-118781260:-|nuORF	ENST00000334801.7_1_11:118781071-118781260:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.285400390625	2	475.798343	949.582134	0.48208	0.00022937	-1.7169	-0.0008169	-1.2348	-0.00058752	475.7978741522952	59.143	0.74415	55.751	55.553	56.297	-3.392					24	14	2	0	0	0	0.027462	1	3929	3929		38.806	6.8513	1	44049			49982	10490	41414	41442	53990	53990					0.10532592499521343
RPLACPPRW	9	Unmodified	_RPLACPPRW_					0	0	0		ENST00000507384.1_2_5:180219964-180220048:-|nuORF	ENST00000507384.1_2_5:180219964-180220048:-|nuORF	ENST00000507384.1_2_5:180219964-180220048:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	548.2950439453125	2	548.297653	1094.58075	-1.4493	-0.00079464	-2.702	-0.0014815	-4.1513	-0.0022761	548.2961982412694	34.285	4.3001	31.575	31.119	35.419	-2.7097					197	86	6	0	0	0	0.67509	1	1431	1431		23.042	3.0457	1	2359300			49983	12927	41415	41443	53991	53991					0.03724635139087695
RPLAKRLF	8	Unmodified	_RPLAKRLF_					0	0	0			REV__ENST00000462189.1_1_2:74688404-74690534:-|nuORF	REV__ENST00000462189.1_1_2:74688404-74690534:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	500.825439453125	2	500.824361	999.634169	-1.7989	-0.00090096	0.9357	0.00046862	-0.86325	-0.00043234	500.8247449295919	61.278	4.4126	58.518	58.094	62.506	-2.7593					209	84	4	0	0	0	0.59148	4	4546	4546;4570;4577;4619		65.803	13.504	1	946070	+		49984	18231	41416	41444	53992;53993;53994;53995	53992					0.13433755913263212
RPLAKRLF	8	Unmodified	_RPLAKRLF_					0	0	0			REV__ENST00000462189.1_1_2:74688404-74690534:-|nuORF	REV__ENST00000462189.1_1_2:74688404-74690534:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.8255920410156	2	500.824361	999.634169	-0.70231	-0.00035174	0.048171	2.4125E-05	-0.65414	-0.00032761	500.82426175027206	62.48	3.824	59.023	58.382	62.206	-3.4577					194	78	4	0	0	0	0.7043	2	4323	4323;4346		42.474	7.2737	1	1001200	+		49985	18231	41416	41444	53996;53997	53996					0.13433755913263212
RPLAQRPL	8	Unmodified	_RPLAQRPL_					0	0	0		chr11:1753450-1757324|193|272.51|0.26|10.02|-|1|None,CTSD|1	chr11:1753450-1757324|193|272.51|0.26|10.02|-|1|None,CTSD|1	chr11:1753450-1757324|193|272.51|0.26|10.02|-|1|None,CTSD|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.8000793457031	2	475.798343	949.582134	0.022058	1.0495E-05	-0.19228	-9.1485E-05	-0.17022	-8.099E-05	475.7981725614516	55.904	1.5182	52.61	52.16	53.679	-3.2944					77	29	4	0	0	0	0.73626	1	3542	3542		33.516	3.0119	1	951660			49986	287	41417	41445	53998	53998					0.10532592499521343
RPLCELPLR	9	Unmodified	_RPLCELPLR_					0	0	0		ENST00000588701.1_1_17:75370096-75370759:-|nuORF	ENST00000588701.1_1_17:75370096-75370759:-|nuORF	ENST00000588701.1_1_17:75370096-75370759:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	548.3345336914062	2	548.818418	1095.62228	-0.66625	-0.00036565	-1.7912	-0.00098302	-2.4574	-0.0013487	548.8167130942193	49.303	0.74074	46.543	46.078	46.819	-2.7603					17	14	2	0	0	0	0.027462	1	3105	3105		47.657	19.775	1	24557			49987	14077	41418	41446	53999	53999					0.07829771107776651
RPLCHGQRL	9	Unmodified	_RPLCHGQRL_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.2981567382812	2	540.298185	1078.58182	-0.33982	-0.0001836	-0.64748	-0.00034983	-0.9873	-0.00053343	540.2979670747679	38.277	3.0652	35.351	34.907	37.972	-2.9264					190	60	5	0	0	0	0.36502	1	1537	1537		55.504	7.5447	1	3652900	+		49988	19568	41419	41447	54000	54000					0.04566849508000814
RPLDPLTMHS	10	Unmodified	_RPLDPLTMHS_					0	0	0		ENST00000593518.1_1_19:4007758-4017708:+|nuORF;ENST00000599999.5_1_19:4007758-4028181:+|nuORF;ENSG00000105229|ENST00000262971|PIAS4	ENST00000593518.1_1_19:4007758-4017708:+|nuORF	ENST00000593518.1_1_19:4007758-4017708:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	583.8018188476562	2	583.802965	1165.59138	-1.251	-0.00073034	0.27486	0.00016046	-0.97615	-0.00056988	583.8030699874896	54.091	2.1426	51.277	50.677	52.82	-2.8139					121	42	5	0	0	0	0.58067	1	3677	3677		44.377	1.5129	1	1035800			49989	2431	41420	41448	54001	54001					0.015205730028583275
RPLERTLKV	9	Unmodified	_RPLERTLKV_					0	0	0		ENST00000434573.1_1_11:67957574-67980138:-|nuORF	ENST00000434573.1_1_11:67957574-67980138:-|nuORF	ENST00000434573.1_1_11:67957574-67980138:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	556.3331298828125	2	556.35094	1110.68733	0.22961	0.00012774	-0.1336	-7.433E-05	0.096009	5.3415E-05	556.3507935290668	69.206	0.44984	66.392	66.162	66.612	-2.8144					11	8	2	0	0	0	0.027462	1	3086	3086		40.778	0	1	11523			49990	11845	41421	41449	54002	54002					0.13641088905274046
RPLETGPRDG	10	Unmodified	_RPLETGPRDG_					0	0	0		ENSG00000148411|ENST00000277554|NACC2	ENSG00000148411|ENST00000277554|NACC2	ENSG00000148411|ENST00000277554|NACC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.3364868164062	2	549.288537	1096.56252	-0.13907	-7.6389E-05	-3.4852	-0.0019144	-3.6243	-0.0019908	549.2868612807705	31.117	0.2905	31.117	30.881	31.171	0					8	5	2	0	0	0	0.026681	1	1258	1258		44.377	7.2181	1	13138			49991	5411	41422	41450	54003	54003					0.01810171698070917
RPLFFRRR	8	Unmodified	_RPLFFRRR_					0	0	0		ENST00000529307.1_1_11:34074563-34074728:+|nuORF	ENST00000529307.1_1_11:34074563-34074728:+|nuORF	ENST00000529307.1_1_11:34074563-34074728:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.3687744140625	2	574.351609	1146.68866	0.025817	1.4828E-05	-1.48	-0.00085004	-1.4542	-0.00083521	574.3506260346347	57.671	0.41954	57.671	57.522	57.941	0					14	9	2	0	0	0	0.028476	1	4852	4852		25.45	15.745	1	381260			49992	13272	41423	41451	54004	54004					0.1211876778468195
RPLFRDSRE	9	Unmodified	_RPLFRDSRE_					0	0	0			REV__ENST00000325926.3_1_2:154334542-154334671:-|nuORF	REV__ENST00000325926.3_1_2:154334542-154334671:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	588.3175659179688	2	588.317628	1174.6207	-0.86515	-0.00050898	0.29962	0.00017627	-0.56553	-0.00033271	588.3178156551718	47.322	1.787	44.612	44.142	45.929	-2.7097					114	35	4	0	0	0	0.35444	1	2883	2883		56.721	0	1	1251100	+		49993	24488	41424	41452	54005	54005					0.04037853343356801
RPLGAQDLS	9	Unmodified	_RPLGAQDLS_					0	0	0		nc|ENSG00000142330|Q9HC96-6|CAPN10	nc|ENSG00000142330|Q9HC96-6|CAPN10	nc|ENSG00000142330|Q9HC96-6|CAPN10	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.94073486328125	2	478.761623	955.508694	-0.36023	-0.00017246	4.2977	0.0020576	3.9375	0.0018851	478.76356065650873	45.597	0.75137	42.887	42.697	43.448	-2.7097					21	14	2	0	0	0	0.027462	1	2693	2693		34.173	12.213	1	139240			49994	15069	41425	41453	54006	54006					0.029159992663721823
RPLGLHVPGLL	11	Unmodified	_RPLGLHVPGLL_					0	0	0		ENST00000341735.3_1_15:90319632-90321465:+|nuORF	ENST00000341735.3_1_15:90319632-90321465:+|nuORF	ENST00000341735.3_1_15:90319632-90321465:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	586.3680419921875	2	586.369133	1170.72371	0.2284	0.00013393	-0.62054	-0.00036386	-0.39213	-0.00022994	586.368761284623	92.323	2.3778	91.155	90.866	93.244	-1.168					141	45	5	0	0	0	0.67814	1	8269	8269		37.159	4.3467	1	1452400			49995	10571	41426	41454	54007	54007					0.1451796580199698
RPLGLSSIS	9	Unmodified	_RPLGLSSIS_					0	0	0			REV__ENST00000585130.5_1_17:29284921-29285101:+|nuORF	REV__ENST00000585130.5_1_17:29284921-29285101:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.2752990722656	2	465.274367	928.53418	-0.056146	-2.6123E-05	-0.17801	-8.2822E-05	-0.23415	-0.00010895	465.27416823288405	78.402	0.75626	75.586	75.263	76.019	-2.8165					35	15	3	0	0	0	0.51865	1	6315	6315		40.778	0	1	432150	+		49996	27852	41427	41455	54008	54008					0.06705473788815652
RPLGTRLGF	9	Unmodified	_RPLGTRLGF_					0	0	0		ENST00000488002.5_1_3:179322588-179334847:+|nuORF;nc|ENSG00000136521|O43674-2|NDUFB5;ENSG00000136521|ENST00000259037|NDUFB5	ENST00000488002.5_1_3:179322588-179334847:+|nuORF	ENST00000488002.5_1_3:179322588-179334847:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	508.8030090332031	2	508.803626	1015.5927	-0.69441	-0.00035332	0.43441	0.00022103	-0.26	-0.00013229	508.8040274066388	74.555	1.1447	72.584	72.114	73.259	-1.9711					65	21	5	0	0	0	0.083631	2	6106	6095;6106		101.6	30.305	1	1109800			49997	4493	41428	41456	54009;54010	54010					0.08552575153930775
RPLGTRLGF	9	Unmodified	_RPLGTRLGF_					0	0	0		ENST00000488002.5_1_3:179322588-179334847:+|nuORF;nc|ENSG00000136521|O43674-2|NDUFB5;ENSG00000136521|ENST00000259037|NDUFB5	ENST00000488002.5_1_3:179322588-179334847:+|nuORF	ENST00000488002.5_1_3:179322588-179334847:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	508.80316162109375	2	508.803626	1015.5927	-0.66266	-0.00033716	0.39402	0.00020048	-0.26864	-0.00013669	508.8039978631368	74.675	1.1236	72.264	71.747	72.87	-2.4106					60	22	5	0	0	0	0.14998	3	3731	3710;3714;3731		84.916	12.457	1	1714500			49998	4493	41428	41456	54011;54012;54013	54013					0.08552575153930775
RPLGTRLGF	9	Unmodified	_RPLGTRLGF_					0	0	0		ENST00000488002.5_1_3:179322588-179334847:+|nuORF;nc|ENSG00000136521|O43674-2|NDUFB5;ENSG00000136521|ENST00000259037|NDUFB5	ENST00000488002.5_1_3:179322588-179334847:+|nuORF	ENST00000488002.5_1_3:179322588-179334847:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.80316162109375	2	508.803626	1015.5927	-0.10874	-5.5328E-05	-0.78724	-0.00040055	-0.89598	-0.00045588	508.80322743519525	75.801	0.91613	72.862	72.449	73.365	-2.9389					46	18	5	0	0	0	0.22621	1	5984	5984		71.877	0.58177	1	1193900			49999	4493	41428	41456	54014	54014					0.08552575153930775
RPLHSGGGP	9	Unmodified	_RPLHSGGGP_					0	0	0			REV__THAP4|p.V422Lfs*122|1|0.25|ENSG00000176946|chr2:241606438-241606451|ACAGTGGCTCCACC/-|frameshift_variant	REV__THAP4|p.V422Lfs*122|1|0.25|ENSG00000176946|chr2:241606438-241606451|ACAGTGGCTCCACC/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	438.2468566894531	2	439.235576	876.456599	1.4509	0.00063728	-2.396	-0.0010524	-0.94513	-0.00041513	439.23445752707727	43.591	0.89407	40.882	40.608	41.502	-2.7097					28	17	2	0	0	0	0.027448	1	2493	2493		27.882	12.24	1	38062	+		50000	29498	41429	41457	54015	54015					0.013428806433012141
RPLILEDGK	9	Unmodified	_RPLILEDGK_					0	0	0		tr|A0A553SLN4|A0A553SLN4_NIACIGlycerol-3-phosphatedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_20840PE=3SV=1	tr|A0A553SLN4|A0A553SLN4_NIACIGlycerol-3-phosphatedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_20840PE=3SV=1	tr|A0A553SLN4|A0A553SLN4_NIACIGlycerol-3-phosphatedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_20840PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.7953491210938	2	520.808574	1039.60259	-0.43011	-0.000224	-0.23484	-0.00012231	-0.66494	-0.00034631	520.8083816508615	78.06	1.5413	75.707	75.151	76.693	-2.3527					71	30	3	0	0	0	0.027462	1	4065	4065		32.812	0	1	380300			50001	33745	41430	41458	54016	54016					0.08437718368645619
RPLIRSGRL	9	Unmodified	_RPLIRSGRL_					0	0	0			REV__ENST00000503051.1_1_4:53525618-53527100:+|nuORF	REV__ENST00000503051.1_1_4:53525618-53527100:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	534.3428955078125	2	534.343449	1066.67235	1.9733	0.0010544	-1.9799	-0.0010579	-0.0065619	-3.5063E-06	534.3423036869325	64.763	1.4145	61.77	61.395	62.809	-2.9933					70	27	3	0	0	0	0.69403	1	2601	2601		19.997	3.5236	1	193540	+		50002	26837	41431	41459	54017	54017					0.14167641827953048
RPLISSGR	8	Unmodified	_RPLISSGR_					0	0	0			REV__ENST00000254323.6_1_19:13941870-13942146:+|nuORF	REV__ENST00000254323.6_1_19:13941870-13942146:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	443.268798828125	2	443.266876	884.519199	-1.1649	-0.00051636	0.90417	0.00040079	-0.26073	-0.00011557	443.26716337641926	44.426	1.4367	41.388	41.106	42.543	-3.0385					63	27	3	0	0	0	0.73205	1	2204	2204		35.618	1.4457	1	514330	+		50003	23878	41432	41460	54018	54018					0.07232026711471917
RPLISSGR	8	Unmodified	_RPLISSGR_					0	0	0			REV__ENST00000254323.6_1_19:13941870-13942146:+|nuORF	REV__ENST00000254323.6_1_19:13941870-13942146:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	443.266876	884.519199	1.9072	0.00084539	-1.7327	-0.00076804	0.17451	7.7356E-05	443.26598638533454	44.2	1.3437	41.49	41.054	42.398	-2.7097	0.05126	-0.0013686	NaN	35.618	51	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118250	+		50004	23878	41432	41460							0.07232026711471917
RPLISSGR	8	Unmodified	_RPLISSGR_					0	0	0			REV__ENST00000254323.6_1_19:13941870-13942146:+|nuORF	REV__ENST00000254323.6_1_19:13941870-13942146:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	443.266876	884.519199	-1.1649	-0.00051636	0.90417	0.00040079	-0.26073	-0.00011557	443.26716337641926	44.426	1.4367	41.388	41.106	42.543	-3.0385	-0.05126	0.00096908	NaN	35.618	63	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	514330	+		50005	23878	41432	41460							0.07232026711471917
RPLKGLTFS	9	Unmodified	_RPLKGLTFS_					0	0	0			REV__ENSG00000172247|ENST00000302514|C1QTNF4	REV__ENSG00000172247|ENST00000302514|C1QTNF4	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8056945800781	2	509.805834	1017.59712	0.31382	0.00015999	-0.67327	-0.00034324	-0.35945	-0.00018325	509.8053412397936	40.93	1.3292	38.22	37.946	39.275	-2.7097					71	26	4	0	0	0	0.56889	1	2124	2124		35.618	0.46626	1	327210	+		50006	21686	41433	41461	54019	54019					0.08902039576832976
RPLLAILDRPE	11	Unmodified	_RPLLAILDRPE_					0	0	0		ENSG00000186862|ENST00000619208|PDZD7;ENST00000474125.6_1_10:102770610-102771988:-|nuORF	ENSG00000186862|ENST00000619208|PDZD7	ENSG00000186862|ENST00000619208|PDZD7	MULTI-SECPEP	OvCa9_classI_Rep2	2	431.5668640136719	3	431.59435	1291.76122	-0.13788	-5.9507E-05	-3.5331	-0.0015249	-3.671	-0.0015844	431.92723352703524	72.489	0.26051	70.089	69.907	70.167	-2.3999					8	4	3	0	0	0	0.025864	1	5861	5861		22.562	10.129	1	5824.9			50007	8367	41434	41462	54020	54020					0.12701012276943402
RPLLALSR	8	Unmodified	_RPLLALSR_					0	0	0			REV__chr14:21386176-21389175|150|10.97|0.58|4.25|-|2|TE_info:AluSg,AluSg_dup26285,Alu,SINE,donor,+,21389175,21389317|CHD8,None|1	REV__chr14:21386176-21389175|150|10.97|0.58|4.25|-|2|TE_info:AluSg,AluSg_dup26285,Alu,SINE,donor,+,21389175,21389317|CHD8,None|1	MULTI-MSMS	OvCa9_classI_Rep2	2	463.3008117675781	2	463.300719	924.586885	-1.235	-0.00057219	1.0563	0.0004894	-0.1787	-8.2791E-05	463.30108478579115	84.367	1.9628	82.82	82.326	84.289	-1.5462					106	38	4	0	0	0	0.6962	2	7284	7248;7284		44.117	0.41757	1	606810	+		50008	15906	41435	41463	54021;54022	54022					0.12157476642278198
RPLLCRPDP	9	Unmodified	_RPLLCRPDP_					0	0	0		nc|ENSG00000186074|Q8TDQ1-4|CD300LF;nc|ENSG00000186074|Q8TDQ1-2|CD300LF;nc|ENSG00000186074|Q8TDQ1-5|CD300LF	nc|ENSG00000186074|Q8TDQ1-4|CD300LF	nc|ENSG00000186074|Q8TDQ1-4|CD300LF	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.8202514648438	2	533.794943	1065.57533	-1.1924	-0.00063652	-2.9198	-0.0015586	-4.1123	-0.0021951	533.7930086325392	70.092	0.5684	70.092	69.84	70.408	0					24	13	2	0	0	0	0.027462	1	6728	6728		35.618	0	1	893590			50009	15220	41436	41464	54023	54023					0.045169115566068285
RPLLCSPGLPH	11	Unmodified	_RPLLCSPGLPH_					0	0	0		ENST00000574385.5_1_16:3029815-3030326:-|nuORF;ENST00000572619.1_1_16:3029815-3030268:-|nuORF	ENST00000574385.5_1_16:3029815-3030326:-|nuORF	ENST00000574385.5_1_16:3029815-3030326:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	595.3286743164062	2	595.32915	1188.64375	-0.28371	-0.0001689	0.28296	0.00016846	-0.00074859	-4.4566E-07	595.3291338724058	92.854	1.0776	91.686	91.341	92.418	-1.168					64	20	4	0	0	0	0.60323	1	8275	8275		44.377	1.5129	1	309200			50010	13913	41437	41465	54024	54024					0.05697156136488957
RPLLGDRQYIR	11	Unmodified	_RPLLGDRQYIR_					0	0	0		nc|ENSG00000145016|Q92622-3|RUBCN;nc|ENSG00000145016|Q92622-2|RUBCN;ENSG00000145016|ENST00000296343|RUBCN	nc|ENSG00000145016|Q92622-3|RUBCN	nc|ENSG00000145016|Q92622-3|RUBCN	MULTI-MSMS	OvCa9_classI_Rep2	2	462.9366149902344	3	462.936999	1385.78917	0.079191	3.666E-05	-0.90827	-0.00042047	-0.82908	-0.00038381	462.9367014144655	44.408	4.3763	41.698	41.303	45.679	-2.7097					263	87	6	0	0	0	0.69735	2	2631	2559;2631		30.569	2.9249	1	4456400			50011	5197	41438	41466	54025;54026	54026					0.1117033525702027
RPLLGLLL	8	Unmodified	_RPLLGLLL_					0	0	0		ENST00000467061.1_1_3:185214522-185216779:-|nuORF;ENST00000475480.5_1_3:185199046-185216749:-|nuORF;ENSG00000163900|ENST00000421852|TMEM41A	ENST00000467061.1_1_3:185214522-185216779:-|nuORF	ENST00000467061.1_1_3:185214522-185216779:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	447.810302734375	2	447.810388	893.606223	2.7892	0.001249	-2.8374	-0.0012706	-0.048227	-2.1597E-05	447.80901078809313	136.31	1.365	134.77	134.4	135.76	-1.5437					55	27	3	0	0	0	0.64377	1	13223	13223		54.765	0	1	73419			50012	6375	41439	41467	54027	54027					0.15516432933191027
RPLLHCAPGF	10	Unmodified	_RPLLHCAPGF_					0	0	0		nc|ENSG00000105664|P49747-2|COMP;ENSG00000105664|ENST00000222271|COMP	nc|ENSG00000105664|P49747-2|COMP	nc|ENSG00000105664|P49747-2|COMP	MULTI-MSMS	OvCa9_classI_Rep2	2	555.7980346679688	2	555.797486	1109.58042	0.67356	0.00037436	1.0328	0.00057403	1.7064	0.00094839	555.7980692819577	66.887	2.2263	64.226	63.651	65.878	-2.661					106	44	4	0	0	0	0.56767	1	5183	5183		45.952	7.1458	1	1196600			50013	2485	41440	41468	54028	54028					0.03001215419226355
RPLLKAITA	9	Unmodified	_RPLLKAITA_					0	0	0		nc|ENSG00000124228|Q96GQ7|DDX27;DDX27|p.E703Dfs*18|1|0.04|ENSG00000124228|chr20:49242105-49242106|-/TTTGCAGCCCGTGGCTTCCTGTGTT|frameshift_variant;ENSG00000124228|ENST00000618172|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF;DDX27|p.C321Vfs*21|1|0.11|ENSG00000124228|chr20:49228875-49228876|-/G|frameshift_variant	nc|ENSG00000124228|Q96GQ7|DDX27	nc|ENSG00000124228|Q96GQ7|DDX27	MULTI-MSMS	OvCa9_classI_Rep3	3	491.82403564453125	2	491.824027	981.633501	0.46179	0.00022712	-0.7084	-0.00034841	-0.24661	-0.00012129	491.82354825905855	68.425	1.4991	65.61	65.262	66.761	-2.8144					71	29	4	0	0	0	0.50149	4	2981	2975;2981;2996;3002		42.396	9.6566	1	317880			50014	14999	41441	41469	54029;54030;54031;54032	54030					0.14194916473536523
RPLLLPPLL	9	Unmodified	_RPLLLPPLL_					0	0	0		ENST00000300141.10_1_15:65804856-65810023:-|nuORF	ENST00000300141.10_1_15:65804856-65810023:-|nuORF	ENST00000300141.10_1_15:65804856-65810023:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.3534545898438	2	516.35242	1030.69029	-0.42341	-0.00021863	0.33536	0.00017317	-0.088051	-4.5465E-05	516.3524564445221	143.41	1.0818	141.97	141.55	142.63	-1.4427					41	20	3	0	0	0	0.44294	1	14048	14048		47.916	0	1	70807			50015	10171	41442	41470	54033	54033					0.17616964030071358
RPLLLPPLL	9	Unmodified	_RPLLLPPLL_					0	0	0		ENST00000300141.10_1_15:65804856-65810023:-|nuORF	ENST00000300141.10_1_15:65804856-65810023:-|nuORF	ENST00000300141.10_1_15:65804856-65810023:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	516.35242	1030.69029	-2.0779	-0.0010729	2.0123	0.001039	-0.065615	-3.3881E-05	516.3533216765419	142.91	1.2845	141.92	141.5	142.78	-0.9903	-0.02774	0.00063638	NaN	47.916	46	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47757			50016	10171	41442	41470							0.17616964030071358
RPLLLSALL	9	Unmodified	_RPLLLSALL_					0	0	0			REV__ENST00000541952.1_1_11:64054130-64055396:+|nuORF	REV__ENST00000541952.1_1_11:64054130-64055396:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3326416015625	2	498.334227	994.653902	1.2643	0.00063007	-1.8659	-0.00092985	-0.60157	-0.00029978	498.3332884380841	124.71	3.4398	123.66	123.27	126.71	-1.0519					179	65	5	0	0	0	0.50149	1	9767	9767		42.396	6.7778	1	3929400	+		50017	27378	41443	41471	54034	54034					0.15636087133361798
RPLLRLEH	8	Unmodified	_RPLLRLEH_					0	0	0			REV__ENST00000361757.7_1_19:1127750-1149427:-|nuORF	REV__ENST00000361757.7_1_19:1127750-1149427:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	517.3161010742188	2	517.3169	1032.61925	-0.68212	-0.00035287	-0.011462	-5.9296E-06	-0.69358	-0.0003588	517.3168564292578	40.576	1.266	40.576	40.154	41.42	0					64	27	5	0	0	0	0.56195	1	2482	2482		71.296	10.324	1	4093800	+		50018	24861	41444	41472	54035	54035					0.10424264045263953
RPLLRTLMY	9	Unmodified	_RPLLRTLMY_					0	0	0		ENST00000585277.1_1_17:73467910-73481792:+|nuORF	ENST00000585277.1_1_17:73467910-73481792:+|nuORF	ENST00000585277.1_1_17:73467910-73481792:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	581.8438110351562	2	581.841894	1161.66923	-0.76817	-0.00044695	3.8649	0.0022488	3.0967	0.0018018	581.8441227498097	39.147	0.57449	39.147	38.972	39.547	0					32	12	4	0	0	0	0.22961	1	2281	2281		71.296	7.0884	1	533520			50019	14025	41445	41473	54036	54036					0.0948663065889832
RPLLRWIL	8	Unmodified	_RPLLRWIL_					0	0	0		MER50_dup1957|chr13:22893204-22893715:+|1.7221420676472057|0.1175728833499881|3.87|418.0|3|1|sense	MER50_dup1957|chr13:22893204-22893715:+|1.7221420676472057|0.1175728833499881|3.87|418.0|3|1|sense	MER50_dup1957|chr13:22893204-22893715:+|1.7221420676472057|0.1175728833499881|3.87|418.0|3|1|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	533.8446044921875	2	533.847836	1065.68112	-2.1157	-0.0011295	-2.1859	-0.001167	-4.3017	-0.0022964	533.8466393399908	53.198	1.0912	50.384	50.084	51.175	-2.8139					42	21	3	0	0	0	0.75241	1	3595	3595		25.45	1.2474	1	99857			50020	14833	41446	41474	54037	54037					0.15090615464418988
RPLLRWIL	8	Unmodified	_RPLLRWIL_					0	0	0		MER50_dup1957|chr13:22893204-22893715:+|1.7221420676472057|0.1175728833499881|3.87|418.0|3|1|sense	MER50_dup1957|chr13:22893204-22893715:+|1.7221420676472057|0.1175728833499881|3.87|418.0|3|1|sense	MER50_dup1957|chr13:22893204-22893715:+|1.7221420676472057|0.1175728833499881|3.87|418.0|3|1|sense	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	533.847836	1065.68112	-1.8494	-0.0009873	-2.0221	-0.0010795	-3.8715	-0.0020668	533.8467218619118	53.622	1.0222	50.386	50.173	51.195	-3.2353	0.00088275	0.00011356	NaN	25.45	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126330			50021	14833	41446	41474							0.15090615464418988
RPLLVPLLL	9	Unmodified	_RPLLVPLLL_					0	0	0			REV__ENSG00000003393|ENST00000264276|ALS2	REV__ENSG00000003393|ENST00000264276|ALS2	MULTI-MSMS	OvCa9_classI_Rep2	2	517.360107421875	2	517.360245	1032.70594	0.038556	1.9947E-05	-0.44941	-0.00023251	-0.41085	-0.00021256	517.3599133873521	135.24	1.9126	135.01	134.59	136.5	-0.22696					104	38	4	0	0	0	0.36502	2	13450	13450;13456		55.504	0	1	602160	+		50022	16372	41447	41475	54038;54039	54038					0.19089250547131087
RPLLVPLLL	9	Unmodified	_RPLLVPLLL_					0	0	0			REV__ENSG00000003393|ENST00000264276|ALS2	REV__ENSG00000003393|ENST00000264276|ALS2	MULTI-MSMS	OvCa9_classI_Rep3	3	517.35986328125	2	517.360245	1032.70594	-0.63272	-0.00032734	0.17774	9.1954E-05	-0.45498	-0.00023539	517.3601946717101	136.63	2.1947	135.53	135.15	137.35	-1.1023					115	44	4	0	0	0	0.44294	3	11091	11091;11146;11152		47.916	0	1	468020	+		50023	16372	41447	41475	54040;54041;54042	54040					0.19089250547131087
RPLLVPMLL	9	Unmodified	_RPLLVPMLL_					0	0	0			REV__ENST00000229329.6_1_12:22218108-22218213:+|nuORF	REV__ENST00000229329.6_1_12:22218108-22218213:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	526.3399047851562	2	526.338455	1050.66236	-0.81474	-0.00042883	3.303	0.0017385	2.4883	0.0013097	526.3400987047603	85.909	2.9151	84.418	84.047	86.963	-1.4906					140	57	5	0	0	0	0.30002	2	7440	7440;7450		62.978	7.4742	1	922440	+		50024	23784	41448	41476	54043;54044	54043					0.13905317778335302
RPLLVPMLL	9	Unmodified	_RPLLVPMLL_					0	0	0			REV__ENST00000229329.6_1_12:22218108-22218213:+|nuORF	REV__ENST00000229329.6_1_12:22218108-22218213:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	526.3414306640625	2	526.338455	1050.66236	-1.4823	-0.0007802	4.4669	0.0023511	2.9845	0.0015709	526.340747965252	87.086	2.9631	84.91	84.431	87.394	-2.1768					160	58	4	0	0	0	0.39645	1	5239	5239		52.299	2.2746	1	1191300	+		50025	23784	41448	41476	54045	54045					0.13905317778335302
RPLLVPMLL	9	Unmodified	_RPLLVPMLL_					0	0	0			REV__ENST00000229329.6_1_12:22218108-22218213:+|nuORF	REV__ENST00000229329.6_1_12:22218108-22218213:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.3405151367188	2	526.338455	1050.66236	-2.1284	-0.0011203	4.364	0.0022969	2.2356	0.0011767	526.3406344905085	87.536	2.6472	84.909	84.549	87.196	-2.6269					140	52	5	0	0	0	0.47884	1	7477	7477		44.531	2.1349	1	1013500	+		50026	23784	41448	41476	54046	54046					0.13905317778335302
RPLMLVMVLT	10	Oxidation (M)	_RPLMLVM(Oxidation (M))VLT_		RPLM(0.007)LVM(0.993)VLT		RPLM(-22)LVM(22)VLT	0	0	1		tr|A0A553SG88|A0A553SG88_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_10385PE=4SV=1	tr|A0A553SG88|A0A553SG88_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_10385PE=4SV=1	tr|A0A553SG88|A0A553SG88_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_10385PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	594.8443603515625	2	594.845787	1187.67702	-0.34669	-0.00020623	-0.26658	-0.00015857	-0.61326	-0.0003648	594.8455284822322	78.84	1.3216	77.1	76.807	78.128	-1.7398					73	25	4	0	0	0	0.53885	1	6618	6618		49.442	9.3834	2	277320			50027	33127	41449	41477	54047	54047		728			0.09069021864161186
RPLNKGKLL	9	Unmodified	_RPLNKGKLL_					0	0	0			REV__ENSG00000182348|ENST00000333190|ZNF804B	REV__ENSG00000182348|ENST00000333190|ZNF804B	MULTI-MSMS	OvCa9_classI_Rep3	3	519.8422241210938	2	519.842751	1037.67095	0.40121	0.00020857	-1.3083	-0.0006801	-0.90707	-0.00047153	519.8420343224896	103.51	3.443	102.08	101.71	105.15	-1.4347					193	65	5	0	0	0	0.29717	1	7210	7210		63.306	0	1	1720200	+		50028	22286	41450	41478	54048	54048					0.15362007739167893
RPLNVRVAL	9	Unmodified	_RPLNVRVAL_					0	0	0		nc|ENSG00000143537|Q13444-2|ADAM15;nc|ENSG00000143537|Q13444-12|ADAM15;nc|ENSG00000143537|Q13444-5|ADAM15;nc|ENSG00000143537|Q13444-4|ADAM15;ENST00000527418.5_1_1:155025082-155034975:+|nuORF;nc|ENSG00000143537|Q13444-3|ADAM15;ENSG00000143537|ENST00000356955|ADAM15;nc|ENSG00000143537|Q13444-13|ADAM15;nc|ENSG00000143537|Q13444-10|ADAM15;nc|ENSG00000143537|Q13444-9|ADAM15;nc|ENSG00000143537|Q13444-8|ADAM15;nc|ENSG00000143537|Q13444-7|ADAM15;nc|ENSG00000143537|Q13444-6|ADAM15;ENST00000461564.6_1_1:155023817-155033989:+|nuORF	nc|ENSG00000143537|Q13444-2|ADAM15	nc|ENSG00000143537|Q13444-2|ADAM15	MULTI-MSMS	OvCa9_classI_Rep2	2	519.3333129882812	2	519.33255	1036.65055	-0.34218	-0.0001777	-0.51268	-0.00026625	-0.85486	-0.00044396	519.3324614247841	76.657	1.8253	74.803	74.414	76.239	-1.854					87	34	4	0	0	0	0.079296	5	6358	6347;6353;6358;6365;6372		102.77	41.801	1	894200			50029	5068	41451	41479	54049;54050;54051;54052;54053	54051					0.13368837079360674
RPLNVRVAL	9	Unmodified	_RPLNVRVAL_					0	0	0		nc|ENSG00000143537|Q13444-2|ADAM15;nc|ENSG00000143537|Q13444-12|ADAM15;nc|ENSG00000143537|Q13444-5|ADAM15;nc|ENSG00000143537|Q13444-4|ADAM15;ENST00000527418.5_1_1:155025082-155034975:+|nuORF;nc|ENSG00000143537|Q13444-3|ADAM15;ENSG00000143537|ENST00000356955|ADAM15;nc|ENSG00000143537|Q13444-13|ADAM15;nc|ENSG00000143537|Q13444-10|ADAM15;nc|ENSG00000143537|Q13444-9|ADAM15;nc|ENSG00000143537|Q13444-8|ADAM15;nc|ENSG00000143537|Q13444-7|ADAM15;nc|ENSG00000143537|Q13444-6|ADAM15;ENST00000461564.6_1_1:155023817-155033989:+|nuORF	nc|ENSG00000143537|Q13444-2|ADAM15	nc|ENSG00000143537|Q13444-2|ADAM15	MULTI-MSMS	OvCa9_classI_Rep3	3	519.3328857421875	2	519.33255	1036.65055	-0.57385	-0.00029802	-0.43453	-0.00022566	-1.0084	-0.00052368	519.3325152322785	77.14	2.0378	74.769	74.348	76.385	-2.3715					111	39	4	0	0	0	0.16524	6	4011	4011;4017;4023;4029;4035;4047		82.305	27.54	1	982990			50030	5068	41451	41479	54054;54055;54056;54057;54058;54059	54054					0.13368837079360674
RPLNVRVAL	9	Unmodified	_RPLNVRVAL_					0	0	0		nc|ENSG00000143537|Q13444-2|ADAM15;nc|ENSG00000143537|Q13444-12|ADAM15;nc|ENSG00000143537|Q13444-5|ADAM15;nc|ENSG00000143537|Q13444-4|ADAM15;ENST00000527418.5_1_1:155025082-155034975:+|nuORF;nc|ENSG00000143537|Q13444-3|ADAM15;ENSG00000143537|ENST00000356955|ADAM15;nc|ENSG00000143537|Q13444-13|ADAM15;nc|ENSG00000143537|Q13444-10|ADAM15;nc|ENSG00000143537|Q13444-9|ADAM15;nc|ENSG00000143537|Q13444-8|ADAM15;nc|ENSG00000143537|Q13444-7|ADAM15;nc|ENSG00000143537|Q13444-6|ADAM15;ENST00000461564.6_1_1:155023817-155033989:+|nuORF	nc|ENSG00000143537|Q13444-2|ADAM15	nc|ENSG00000143537|Q13444-2|ADAM15	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.333740234375	2	519.33255	1036.65055	-0.41488	-0.00021546	-0.56703	-0.00029448	-0.98191	-0.00050994	519.332333057968	77.856	1.7685	75.04	74.681	76.449	-2.8165					94	36	5	0	0	0	0.22961	3	6244	6244;6254;6267		71.296	26.765	1	1010300			50031	5068	41451	41479	54060;54061;54062	54060					0.13368837079360674
RPLPEETGV	9	Unmodified	_RPLPEETGV_					0	0	0		ENSG00000167654|ENST00000450849|ATCAY;nc|ENSG00000167654|Q86WG3-3|ATCAY	ENSG00000167654|ENST00000450849|ATCAY	ENSG00000167654|ENST00000450849|ATCAY	MULTI-MSMS	OvCa9_classI_Rep2	2	499.26898193359375	2	499.269281	996.52401	-1.9109	-0.00095404	1.2543	0.00062623	-0.65658	-0.00032781	499.2697981764655	34.541	0.69393	31.831	31.662	32.356	-2.7097					27	13	3	0	0	0	0.48324	1	1333	1333		44.117	4.864	1	65982			50032	6824	41452	41480	54063	54063					0.025608660635725755
RPLPIGLASHA	11	Unmodified	_RPLPIGLASHA_					0	0	0			REV__ENST00000579096.1_1_17:73110716-73125130:+|nuORF	REV__ENST00000579096.1_1_17:73110716-73125130:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.8535766601562	2	566.33529	1130.65603	0.2271	0.00012861	-1.573	-0.00089084	-1.3459	-0.00076223	566.3339618465127	62.14	0.591	62.14	61.869	62.46	0					23	13	3	0	0	0	0.025746	1	5514	5514		19.104	0	1	418670	+		50033	18725	41453	41481	54064	54064					0.09592515871213436
RPLPKILFT	9	Unmodified	_RPLPKILFT_					0	0	0		SDC2|p.L79F|1|0.09|ENSG00000169439|chr8:96602459-96602459|G/C|missense_variant	SDC2|p.L79F|1|0.09|ENSG00000169439|chr8:96602459-96602459|G/C|missense_variant	SDC2|p.L79F|1|0.09|ENSG00000169439|chr8:96602459-96602459|G/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	542.2905883789062	2	542.847502	1083.68045	-1.0197	-0.00055356	-3.8469	-0.0020883	-4.8667	-0.0026419	542.8456318506293	74.484	1.2497	72.513	72.272	73.521	-1.9711					40	23	3	0	0	0	0.027462	1	6180	6180		32.812	1.2826	1	74863			50034	32805	41454	41482	54065	54065					0.1419577602471236
RPLPKILFT	9	Unmodified	_RPLPKILFT_					0	0	0		SDC2|p.L79F|1|0.09|ENSG00000169439|chr8:96602459-96602459|G/C|missense_variant	SDC2|p.L79F|1|0.09|ENSG00000169439|chr8:96602459-96602459|G/C|missense_variant	SDC2|p.L79F|1|0.09|ENSG00000169439|chr8:96602459-96602459|G/C|missense_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	542.847502	1083.68045	-0.24933	-0.00013535	-4.5658	-0.0024785	-4.8152	-0.0026139	542.8451091001887	74.772	1.2344	72.362	72.043	73.278	-2.4106	-0.075568	-0.00034996	NaN	32.812	47	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54438			50035	32805	41454	41482							0.1419577602471236
RPLPLFCVF	9	Unmodified	_RPLPLFCVF_					0	0	0		ENST00000542068.5_1_2:219460696-219461125:+|nuORF	ENST00000542068.5_1_2:219460696-219461125:+|nuORF	ENST00000542068.5_1_2:219460696-219461125:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.7862548828125	2	546.307155	1090.59976	-1.2985	-0.00070938	0.49674	0.00027137	-0.80176	-0.00043801	546.3075985288166	41.651	0.20744	38.671	38.593	38.801	-2.9804					6	3	2	0	0	0	0.027462	1	1886	1886		13.775	0	1	7632.4			50036	13473	41455	41483	54066	54066					0.05808171710145871
RPLPPLPPR	9	Unmodified	_RPLPPLPPR_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.7946166992188	2	521.829643	1041.64473	-0.85452	-0.00044592	-2.0202	-0.0010542	-2.8747	-0.0015001	521.828114804539	76.708	1.4026	74.336	73.98	75.383	-2.3715					49	26	3	0	0	0	0.027448	1	4053	4053		63.306	26.147	1	151200			50037	1532	41456	41484	54067	54067					0.12557738567693377
RPLPPLRF	8	Unmodified	_RPLPPLRF_					0	0	0			REV__nc|ENSG00000244274|Q9BQY9|DBNDD2	REV__nc|ENSG00000244274|Q9BQY9|DBNDD2	MSMS	OvCa99_classI_Rep5	1	498.3133239746094	2	498.311087	994.60762	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.758	1	85.758	85.258	86.258	0								0	0	0	0.30129	1	9013	9013		33.516	6.7195	1		+		50038	29162	41457	41485	54068	54068					0.11010067021948089
RPLPTAPLACR	11	Unmodified	_RPLPTAPLACR_					0	0	0			REV__chr17:76269052-76270194|130|18.85|0.26|6.19|+|1|None,UBALD2|1	REV__chr17:76269052-76270194|130|18.85|0.26|6.19|+|1|None,UBALD2|1	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8444213867188	2	597.842425	1193.6703	-1.0621	-0.00063494	4.0006	0.0023917	2.9385	0.0017568	597.8448623061217	39.625	1.1911	36.915	36.509	37.7	-2.7097					64	23	4	0	0	0	0.69099	1	1950	1950		32.751	1.1163	1	140150	+		50039	15951	41458	41486	54069	54069					0.08120845027792711
RPLPTNIIDSL	11	Unmodified	_RPLPTNIIDSL_					0	0	0			REV__nc|ENSG00000106290|P49848-4|TAF6	REV__nc|ENSG00000106290|P49848-4|TAF6	MULTI-SECPEP	OvCa9_classI_Rep2	2	414.5704650878906	3	413.574955	1237.70304	-0.19522	-8.074E-05	2.5445	0.0010523	2.3493	0.0009716	413.9104050472236	67.763	0.34599	65.102	64.892	65.238	-2.661					10	6	2	0	0	0	0.025861	1	5305	5305		26.75	9.583	1	9266.8	+		50040	17789	41459	41487	54070	54070					0.09369330631648154
RPLQSASP	8	Unmodified	_RPLQSASP_					0	0	0		ENST00000392508.2_1_12:120933958-120934215:+|nuORF;ENST00000550178.1_1_12:120933958-120934105:+|nuORF;ENST00000242577.10_1_12:120933958-120935883:+|nuORF	ENST00000392508.2_1_12:120933958-120934215:+|nuORF	ENST00000392508.2_1_12:120933958-120934215:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	428.2385559082031	2	428.237784	854.461016	0.61498	0.00026336	-0.72308	-0.00030965	-0.1081	-4.6292E-05	428.2373350133255	47.955	1.8924	44.847	44.237	46.129	-3.1077					76	36	3	0	0	0	0.56195	1	2618	2618		71.296	2.811	1	507230			50041	9762	41460	41488	54071	54071					0.027963450661786737
RPLQVAQH	8	Unmodified	_RPLQVAQH_					0	0	0			REV__nc|ENSG00000119314|O95758-7|PTBP3	REV__nc|ENSG00000119314|O95758-7|PTBP3	MULTI-MSMS	OvCa9_classI_Rep2	2	474.7724609375	2	474.772326	947.530098	-2.2434	-0.0010651	2.3114	0.0010974	0.067932	3.2252E-05	474.77329814512956	37.51	1.38	34.8	34.287	35.667	-2.7097					69	27	4	0	0	0	0.67745	1	1703	1703		47.916	0.25827	1	277560	+		50042	18434	41461	41489	54072	54072					0.05423429085749376
RPLRGLLKS	9	Unmodified	_RPLRGLLKS_					0	0	0		ENSG00000142235|ENST00000600059|LMTK3	ENSG00000142235|ENST00000600059|LMTK3	ENSG00000142235|ENST00000600059|LMTK3	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.3388061523438	2	520.340375	1038.6662	-0.78006	-0.0004059	0.73752	0.00038376	-0.042543	-2.2137E-05	520.3404101251207	39.944	1.9528	36.99	36.616	38.569	-2.9541					93	37	5	0	0	0	0.51865	1	1669	1669		40.778	0.20554	1	1048100			50043	4964	41462	41490	54073	54073					0.14841123596397665
RPLRGVGG	8	Unmodified	_RPLRGVGG_					0	0	0			REV__ENST00000372902.3_1_X:100603579-100603852:-|nuORF	REV__ENST00000372902.3_1_X:100603579-100603852:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	406.2481384277344	2	406.248486	810.48242	0.12737	5.1745E-05	0.179	7.2718E-05	0.30637	0.00012446	406.2484453732125	140.19	2.0181	139.96	139.4	141.42	-0.22697					109	40	4	0	0	0	0.74679	1	14079	14079		28.254	0	1	304300	+		50044	25019	41463	41491	54074	54074					0.06959774885569914
RPLRLLVA	8	Unmodified	_RPLRLLVA_					0	0	0		nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1;PREX1|p.C968Wfs*56|1|0.22|ENSG00000124126|chr20:48650120-48650121|-/ACCAAGGGTCCCACTGGCTGGCCCGAAGCTGC|frameshift_variant;PREX1|p.T970Vfs*46|1|0.08|ENSG00000124126|chr20:48650116-48650117|-/CATGGTGGTGATGCAGTGCTGGGTGTAC|frameshift_variant	nc|ENSG00000124126|Q8TCU6-3|PREX1;PREX1|p.T970Vfs*46|1|0.08|ENSG00000124126|chr20:48650116-48650117|-/CATGGTGGTGATGCAGTGCTGGGTGTAC|frameshift_variant	nc|ENSG00000124126|Q8TCU6-3|PREX1	MULTI-MSMS	OvCa9_classI_Rep4_	4	469.3196105957031	2	469.318912	936.62327	-0.085907	-4.0318E-05	-0.31424	-0.00014748	-0.40015	-0.0001878	469.3186287430405	79.799	1.1616	77.047	76.703	77.865	-2.7514					53	23	3	0	0	0	0.7043	1	6497	6497		42.474	0	1	232300			50045	14997;15520	41464	41492	54075	54075					0.15242353538985753
RPLRLLVA	8	Unmodified	_RPLRLLVA_					0	0	0		nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1;PREX1|p.C968Wfs*56|1|0.22|ENSG00000124126|chr20:48650120-48650121|-/ACCAAGGGTCCCACTGGCTGGCCCGAAGCTGC|frameshift_variant;PREX1|p.T970Vfs*46|1|0.08|ENSG00000124126|chr20:48650116-48650117|-/CATGGTGGTGATGCAGTGCTGGGTGTAC|frameshift_variant	nc|ENSG00000124126|Q8TCU6-3|PREX1;PREX1|p.T970Vfs*46|1|0.08|ENSG00000124126|chr20:48650116-48650117|-/CATGGTGGTGATGCAGTGCTGGGTGTAC|frameshift_variant	nc|ENSG00000124126|Q8TCU6-3|PREX1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	469.318912	936.62327	0.40789	0.00019143	-0.41572	-0.00019511	-0.0078291	-3.6743E-06	469.31857559992494	79.403	2.0554	77.063	76.213	78.268	-2.3399	0.0080696	-3.2236E-05	NaN	42.474	89	40	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170250			50046	14997;15520	41464	41492							0.15242353538985753
RPLRLQRS	8	Unmodified	_RPLRLQRS_					0	0	0		ENST00000602705.1_1_16:67691044-67691418:+|nuORF;ENST00000602368.1_3_16:67688780-67691418:+|nuORF;nc|ENSG00000159753|Q6F5E8-2|CARMIL2;ENSG00000159753|ENST00000334583|CARMIL2	ENST00000602705.1_1_16:67691044-67691418:+|nuORF	ENST00000602705.1_1_16:67691044-67691418:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.2952270507812	2	513.319974	1024.6254	-1.0188	-0.00052298	-2.6864	-0.001379	-3.7052	-0.0019019	513.3184463898551	41.076	0.83002	38.122	37.841	38.671	-2.9541					39	15	3	0	0	0	0.028476	1	1852	1852		27.882	1.1893	1	119980			50047	6027	41465	41493	54076	54076					0.11406782276776539
RPLRLQRS	8	Unmodified	_RPLRLQRS_					0	0	0		ENST00000602705.1_1_16:67691044-67691418:+|nuORF;ENST00000602368.1_3_16:67688780-67691418:+|nuORF;nc|ENSG00000159753|Q6F5E8-2|CARMIL2;ENSG00000159753|ENST00000334583|CARMIL2	ENST00000602705.1_1_16:67691044-67691418:+|nuORF	ENST00000602705.1_1_16:67691044-67691418:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	513.319974	1024.6254	0.33846	0.00017374	-3.9659	-0.0020358	-3.6274	-0.001862	513.3178280182748	40.784	0.83663	38.074	37.749	38.586	-2.7097	-0.023954	-0.00048835	NaN	20.947	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37867			50048	6027	41465	41493							0.11406782276776539
RPLRNIFLK	9	Unmodified	_RPLRNIFLK_					0	0	0		nc|ENSG00000181631|Q9BPV8-2|P2RY13;ENSG00000181631|ENST00000325602|P2RY13;tr|A0A7D6VPQ1|A0A7D6VPQ1_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23830PE=3SV=1	nc|ENSG00000181631|Q9BPV8-2|P2RY13;tr|A0A7D6VPQ1|A0A7D6VPQ1_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23830PE=3SV=1	tr|A0A7D6VPQ1|A0A7D6VPQ1_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23830PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	578.8171997070312	2	578.8693	1155.72405	-1.1407	-0.00066031	-0.23646	-0.00013688	-1.3772	-0.00079719	578.8690367895509	52.634	1.6167	49.426	49.145	50.762	-3.208					71	31	3	0	0	0	0.027462	1	3275	3275		38.806	5.2906	1	182240			50049	34788;7941	41466	41494	54077	54077					0.15241385521812845
RPLRNIFLK	9	Unmodified	_RPLRNIFLK_					0	0	0		nc|ENSG00000181631|Q9BPV8-2|P2RY13;ENSG00000181631|ENST00000325602|P2RY13;tr|A0A7D6VPQ1|A0A7D6VPQ1_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23830PE=3SV=1	nc|ENSG00000181631|Q9BPV8-2|P2RY13;tr|A0A7D6VPQ1|A0A7D6VPQ1_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23830PE=3SV=1	tr|A0A7D6VPQ1|A0A7D6VPQ1_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23830PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	578.8693	1155.72405	-1.6894	-0.00097792	0.19712	0.0001141	-1.4922	-0.00086381	578.8692664245611	52.187	1.4336	49.375	49.096	50.53	-2.8129	-0.025601	0.00019235	NaN	65.803	66	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172840			50050	34788;7941	41466	41494							0.15241385521812845
RPLRRFFH	8	Unmodified	_RPLRRFFH_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	OvCa9_classI_Rep2	2	564.8294677734375	2	564.830509	1127.64647	-0.78673	-0.00044437	-3.768	-0.0021283	-4.5548	-0.0025727	564.8281356979684	55.822	1.7837	53.018	52.731	54.515	-2.804					83	35	4	0	0	0	0.73626	1	3900	3900		33.516	0.70317	1	335610			50051	2309	41467	41495	54078	54078					0.08774792376334517
RPLRRGAEKSL	11	Unmodified	_RPLRRGAEKSL_					0	0	0		ENSG00000196872|ENST00000397899|CRACDL	ENSG00000196872|ENST00000397899|CRACDL	ENSG00000196872|ENST00000397899|CRACDL	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8834228515625	2	641.888752	1281.76295	-5.3554	-0.0034376	-4.2627	-0.0027362	-9.6181	-0.0061737	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.68021	1	13187	13187		36.447	0	1	804890			50052	8654	41468	41496	54079	54079					0.13334066085553786
RPLRWRAR	8	Unmodified	_RPLRWRAR_					0	0	0			REV__ENST00000341864.5_1_X:77394420-77395140:-|nuORF	REV__ENST00000341864.5_1_X:77394420-77395140:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	555.7977905273438	2	555.841408	1109.66826	0.10715	5.9561E-05	-2.2422	-0.0012463	-2.135	-0.0011867	555.8401357312698	67.299	0.84168	64.637	64.298	65.139	-2.661					43	16	4	0	0	0	0.028476	1	5219	5219		33.516	0	1	207310	+		50053	24641	41469	41497	54080	54080					0.1178159712485467
RPLSFLLPTVV	11	Unmodified	_RPLSFLLPTVV_					0	0	0		ENSG00000131067|ENST00000336431|GGT7	ENSG00000131067|ENST00000336431|GGT7	ENSG00000131067|ENST00000336431|GGT7	MULTI-MSMS	OvCa9_classI_Rep4_	4	621.3831176757812	2	621.384448	1240.75434	0.63091	0.00039204	-2.7504	-0.001709	-2.1195	-0.001317	621.3825974566482	32.776	1.7235	30.08	29.569	31.293	-2.6954					81	36	3	0	0	0	0.72483	1	802	802		9.1829	0	1	73112			50054	4042	41470	41498	54081	54081					0.14359699396345604
RPLSGVRRPP	10	Unmodified	_RPLSGVRRPP_					0	0	0		ENST00000482173.5_1_7:150929596-150929890:+|nuORF	ENST00000482173.5_1_7:150929596-150929890:+|nuORF	ENST00000482173.5_1_7:150929596-150929890:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.8023681640625	2	567.846356	1133.67816	2.4172	0.0013726	1.6934	0.00096156	4.1106	0.0023342	567.8472393917749	91.758	0.59194	91.758	91.582	92.174	0					21	13	2	0	0	0	0.027118	1	9917	9917		25.574	7.312	1	187880			50055	12565	41471	41499	54082	54082					0.11666740339592252
RPLSIQDSF	9	Unmodified	_RPLSIQDSF_					0	0	0		ENSG00000185033|ENST00000411539|SEMA4B	ENSG00000185033|ENST00000411539|SEMA4B	ENSG00000185033|ENST00000411539|SEMA4B	MULTI-MSMS	OvCa9_classI_Rep2	2	531.7821655273438	2	531.782556	1061.55056	-1.5399	-0.00081889	1.1515	0.00061235	-0.38839	-0.00020654	531.7830281716216	47.648	1.6888	44.939	44.39	46.079	-2.7097					102	33	5	0	0	0	0.1804	1	2938	2938		79.713	7.8351	1	612800			50056	8216	41472	41500	54083	54083					0.022245549548870258
RPLSKTVRF	9	Unmodified	_RPLSKTVRF_					0	0	0		ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MSMS	OvCa9_classI_Rep2	2	552.3372192382812	2	552.337833	1102.66111	-0.49609	-0.00027401	0.47798	0.00026401	-0.018103	-9.999E-06	552.3379570149048	51.847	1.2864	49.034	48.651	49.937	-2.8129					70	25	4	0	0	0	0.57283	1	3420	3420		35.152	1.6364	1	206250			50057	4977	41473	41501	54084	54084					0.11388819733770106
RPLSKTVRF	9	Unmodified	_RPLSKTVRF_					0	0	0		ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	ENSG00000142534|ENST00000270625|RPS11	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	552.337833	1102.66111	-0.40027	-0.00022109	0.26708	0.00014752	-0.13319	-7.3566E-05	552.3378372424727	52.358	1.2539	49.15	48.792	50.046	-3.208	0.058036	-0.00014655	NaN	35.152	60	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	305110			50058	4977	41473	41501							0.11388819733770106
RPLSLPGTW	9	Unmodified	_RPLSLPGTW_					0	0	0		CSAD|p.M368Cfs*28|1|0.11|ENSG00000139631|chr12:53160185-53160185|G/-|frameshift_variant	CSAD|p.M368Cfs*28|1|0.11|ENSG00000139631|chr12:53160185-53160185|G/-|frameshift_variant	CSAD|p.M368Cfs*28|1|0.11|ENSG00000139631|chr12:53160185-53160185|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	513.7885131835938	2	513.790184	1025.56581	-0.70394	-0.00036168	-3.643	-0.0018718	-4.347	-0.0022334	513.7882058006563	39.281	1.982	36.571	35.964	37.946	-2.7097					102	39	5	0	0	0	0.56889	1	1918	1918		35.618	0.41757	1	512530			50059	684	41474	41502	54085	54085					0.05405466542742943
RPLSLVTKL	9	Unmodified	_RPLSLVTKL_					0	0	0			REV__ENSG00000197177|ENST00000392607|ADGRA1	REV__ENSG00000197177|ENST00000392607|ADGRA1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.7938232421875	2	513.837134	1025.65972	-1.1696	-0.000601	1.054	0.00054156	-0.11567	-5.9435E-05	513.8373186575492	42.638	0.68116	39.658	39.461	40.142	-2.9804					22	12	3	0	0	0	0.027462	1	2002	2002		35.152	16.828	1	37465	+		50060	22900	41475	41503	54086	54086					0.14791185645026417
RPLSLVTKL	9	Unmodified	_RPLSLVTKL_					0	0	0			REV__ENSG00000197177|ENST00000392607|ADGRA1	REV__ENSG00000197177|ENST00000392607|ADGRA1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	513.837134	1025.65972	1.0277	0.00052809	-1.0591	-0.00054418	-0.031308	-1.6087E-05	513.8364113524195	42.192	0.54318	39.483	39.324	39.868	-2.7097	-0.087699	-0.00083444	NaN	35.152	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14838	+		50061	22900	41475	41503							0.14791185645026417
RPLSNPVHL	9	Unmodified	_RPLSNPVHL_					0	0	0		ENST00000519241.5_1_8:58055399-58131978:+|nuORF;ENST00000519314.5_1_8:58055402-58113609:+|nuORF	ENST00000519241.5_1_8:58055399-58131978:+|nuORF	ENST00000519241.5_1_8:58055399-58131978:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	516.8032836914062	2	516.801083	1031.58761	0.62899	0.00032506	3.5071	0.0018125	4.136	0.0021375	516.8026770192158	157.51	0.5555	157.51	157.25	157.8	0					21	10	3	0	0	0	0.50149	1	18464	18464		42.396	11.892	1	81792			50062	13084	41476	41504	54087	54087					0.07308271291321944
RPLSPRSE	8	Unmodified	_RPLSPRSE_					0	0	0		ENST00000380559.7_1_9:18706652-18908543:+|nuORF;ENSG00000178031|ENST00000380548|ADAMTSL1	ENST00000380559.7_1_9:18706652-18908543:+|nuORF	ENST00000380559.7_1_9:18706652-18908543:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	471.2618103027344	2	471.261791	940.509028	0.74224	0.00034979	-0.77963	-0.00036741	-0.037385	-1.7618E-05	471.26127618416797	42.586	1.0873	39.876	39.621	40.708	-2.7097					50	21	3	0	0	0	0.73494	1	2303	2303		34.173	3.6689	1	212530			50063	7728	41477	41505	54088	54088					0.036394189862335224
RPLSTPGRELT	11	Unmodified	_RPLSTPGRELT_					0	0	0		nc|ENSG00000100351|O75791-2|GRAP2	nc|ENSG00000100351|O75791-2|GRAP2	nc|ENSG00000100351|O75791-2|GRAP2	MULTI-MSMS	OvCa9_classI_Rep2	2	613.8441772460938	2	613.846219	1225.67788	-1.3186	-0.00080939	1.0654	0.00065396	-0.25321	-0.00015543	613.846862023676	60.404	2.094	57.633	57.032	59.126	-2.7702					128	39	6	0	0	0	0.56391	1	4449	4449		47.96	0.30219	1	1043300			50064	14926	41478	41506	54089	54089					0.07407275829086757
RPLTCYITD	9	Unmodified	_RPLTCYITD_					0	0	0			REV__EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant	REV__EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.2981567382812	2	541.270967	1080.52738	-0.45867	-0.00024827	4.3454	0.002352	3.8867	0.0021038	541.2722673522164	38.769	0.19782	35.843	35.7	35.898	-2.9264					5	3	2	0	0	0	0.027462	1	1537	1537		27.882	0	1	7580.4	+		50065	18000	41479	41507	54090	54090					-0.00966207154078802
RPLTLVTAHRL	11	Unmodified	_RPLTLVTAHRL_					0	0	0			REV__OR51E1|p.I210Lfs*22|1|0.09|ENSG00000180785|chr11:4653154-4653154|A/-|frameshift_variant	REV__OR51E1|p.I210Lfs*22|1|0.09|ENSG00000180785|chr11:4653154-4653154|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	638.8970947265625	2	638.896046	1275.77754	-0.53707	-0.00034313	-0.63851	-0.00040794	-1.1756	-0.00075107	638.8954846802164	100.88	1.8421	98.613	98.187	100.03	-2.2665					80	36	4	0	0	0	0.70142	1	9045	9045		29.17	1.2878	1	266330	+		50066	22196	41480	41508	54091	54091					0.1506813823370976
RPLTNCSII	9	Unmodified	_RPLTNCSII_					0	0	0		ENSG00000168938|ENST00000306442|PPIC	ENSG00000168938|ENST00000306442|PPIC	ENSG00000168938|ENST00000306442|PPIC	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.8022766113281	2	508.781502	1015.54845	-0.70777	-0.0003601	-0.32641	-0.00016607	-1.0342	-0.00052617	508.7789002277668	74.802	0.67259	72.831	72.534	73.206	-1.9711					24	12	3	0	0	0	0.027047	1	6112	6112		76.774	0	1	43759			50067	6960	41481	41509	54092	54092					0.041298029454537755
RPLVALSWGFF	11	Unmodified	_RPLVALSWGFF_					0	0	0			REV__AluY_dup76799|chr14:19068411-19068703:-|1.357001481976941|0.0837437417755778|4.02|409.0|21|3|anti-sense	REV__AluY_dup76799|chr14:19068411-19068703:-|1.357001481976941|0.0837437417755778|4.02|409.0|21|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	431.5670471191406	3	431.576519	1291.70773	-0.18917	-8.1643E-05	3.6965	0.0015953	3.5073	0.0015137	431.5786975284403	72.545	0.52357	70.145	69.907	70.43	-2.3999					16	9	3	0	0	0	0.025487	1	5885	5885		38.754	2.436	1	14468	+		50068	15623	41482	41510	54093	54093					0.07354259565067878
RPLVMRSVPI	10	Unmodified	_RPLVMRSVPI_					0	0	0			REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|229|2|anti-sense	REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|229|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3565063476562	2	584.355168	1166.69578	-2.3121	-0.0013511	4.4342	0.0025912	2.1222	0.0012401	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.76627	1	14496	14496		23.042	1.0826	1	180810	+		50069	28469	41483	41511	54094	54094					0.1191031955024755
RPLVPAAPRP	10	Unmodified	_RPLVPAAPRP_					0	0	0			REV__ENST00000219478.10_1_16:4816007-4817106:-|nuORF	REV__ENST00000219478.10_1_16:4816007-4817106:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.3026733398438	2	537.33255	1072.65055	-1.6159	-0.00086826	-0.33836	-0.00018181	-1.9542	-0.0010501	537.3322806299949	50.953	1.8187	47.779	47.412	49.23	-3.1734					81	35	3	0	0	0	0.027422	1	3059	3059		93.195	34.414	1	196160	+		50070	23735	41484	41512	54095	54095					0.11712837079335259
RPLVPLGKDG	10	Unmodified	_RPLVPLGKDG_					0	0	0			REV__chr20:3217746-3218517|114|21.64|0.6|5.18|+|1|TE_info:AluJo,AluJo_dup73722,Alu,SINE,donor,-,3217460,3217746|None,ITPA|1	REV__chr20:3217746-3218517|114|21.64|0.6|5.18|+|1|TE_info:AluJo,AluJo_dup73722,Alu,SINE,donor,-,3217460,3217746|None,ITPA|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.341796875	2	526.316566	1050.61858	0.61426	0.0003233	-1.5094	-0.0007944	-0.8951	-0.00047111	526.3156249787964	86.116	1.9942	83.47	83.091	85.086	-2.6463					99	39	4	0	0	0	0.026653	1	7442	7442		49.536	15.364	1	546980	+		50071	16013	41485	41513	54096	54096					0.09529424605557324
RPLVRTKAE	9	Unmodified	_RPLVRTKAE_					0	0	0			REV__chr6:34242795-34244831|91|104.92|0.1|9.98|+|1|HMGA1,HMGA1|1	REV__chr6:34242795-34244831|91|104.92|0.1|9.98|+|1|HMGA1,HMGA1|1	MULTI-MSMS	OvCa9_classI_Rep2	2	535.3273315429688	2	535.327465	1068.64038	-1.2502	-0.00066929	0.80875	0.00043294	-0.4415	-0.00023635	535.3279070397938	59.315	2.607	56.535	55.888	58.495	-2.7801					134	49	4	0	0	0	0.40818	1	4300	4300		51.193	8.3284	1	990330	+		50072	16077	41486	41514	54097	54097					0.10880229354143012
RPLVVKTSL	9	Unmodified	_RPLVVKTSL_					0	0	0		ENSG00000152464|ENST00000378197|RPP38	ENSG00000152464|ENST00000378197|RPP38	ENSG00000152464|ENST00000378197|RPP38	MULTI-MSMS	OvCa9_classI_Rep2	2	506.82855224609375	2	506.829309	1011.64407	0.7921	0.00040146	-1.3411	-0.00067969	-0.54896	-0.00027823	506.8285830961631	65.847	1.4924	63.151	62.771	64.263	-2.6958					94	29	5	0	0	0	0.13504	4	5087	5075;5080;5087;5095		87.696	45.908	1	675270			50073	5625	41487	41515	54098;54099;54100;54101	54100					0.1387089912798274
RPLVVKTSL	9	Unmodified	_RPLVVKTSL_					0	0	0		ENSG00000152464|ENST00000378197|RPP38	ENSG00000152464|ENST00000378197|RPP38	ENSG00000152464|ENST00000378197|RPP38	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.830322265625	2	506.829309	1011.64407	-0.40581	-0.00020568	-0.011178	-5.6652E-06	-0.41699	-0.00021134	506.8291860779689	66.651	1.7223	63.161	62.756	64.478	-3.4902					93	34	4	0	0	0	0.094791	3	4859	4859;4869;4883		98.582	34.375	1	705560			50074	5625	41487	41515	54102;54103;54104	54102					0.1387089912798274
RPLVVLSAPRL	11	Unmodified	_RPLVVLSAPRL_					0	0	0			REV__nc|ENSG00000133943|Q7Z3D6-4|DGLUCY	REV__nc|ENSG00000133943|Q7Z3D6-4|DGLUCY	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.58642578125	3	407.599435	1219.77648	0.45984	0.00018743	-2.7744	-0.0011308	-2.3145	-0.0009434	407.5979440875715	33.98	0.28875	33.98	33.824	34.113	0					9	5	2	0	0	0	0.025904	1	1591	1591		30.139	2.4952	1	28195	+		50075	28860	41488	41516	54105	54105					0.1753792386477926
RPLVVRTGA	9	Unmodified	_RPLVVRTGA_					0	0	0		nc|ENSG00000001617|Q13275-2|SEMA3F;ENSG00000001617|ENST00000002829|SEMA3F	nc|ENSG00000001617|Q13275-2|SEMA3F	nc|ENSG00000001617|Q13275-2|SEMA3F	MULTI-MSMS	OvCa9_classI_Rep3	3	484.8035583496094	2	484.803626	967.592698	0.80858	0.000392	-0.69069	-0.00033485	0.11789	5.7152E-05	484.80311931217824	65.561	1.2695	62.615	62.35	63.62	-2.9459					49	24	3	0	0	0	0.69123	1	2635	2635		20.947	1.8434	1	183720			50076	805	41489	41517	54106	54106					0.10760575153938134
RPLWMASI	8	Unmodified	_RPLWMASI_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.7654113769531	2	487.26803	972.521507	-0.27943	-0.00013616	-1.379	-0.00067195	-1.6584	-0.0008081	487.2676548716212	32.5	0.5927	29.79	29.679	30.272	-2.7097					12	11	2	0	0	0	0.028476	1	1129	1129		31.955	1.4512	1	15130			50077	1687	41490	41518	54107	54107					0.034147391249234715
RPLYKNIVL	9	Unmodified	_RPLYKNIVL_					0	0	0		ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	MULTI-MSMS	OvCa9_classI_Rep2	2	558.350341796875	2	558.350409	1114.68626	0.949	0.00052987	-1.8776	-0.0010484	-0.92863	-0.0005185	558.3493850514238	82.213	2.1494	80.564	80.179	82.328	-1.6485					112	42	4	0	0	0	0.18193	5	7000	6994;7000;7018;7026;7033		79.451	21.64	1	1240000			50078	3061	41491	41519	54108;54109;54110;54111;54112	54109					0.1335087453635424
RPLYKNIVL	9	Unmodified	_RPLYKNIVL_					0	0	0		ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	MULTI-MSMS	OvCa9_classI_Rep3	3	558.350830078125	2	558.350409	1114.68626	-1.3961	-0.00077949	0.46156	0.00025771	-0.9345	-0.00052178	558.3506628523401	83.366	2.2805	81.079	80.639	82.919	-2.2867					139	47	4	0	0	0	0.13482	3	4766	4742;4759;4766		87.754	18.999	1	1662600			50079	3061	41491	41519	54113;54114;54115	54115					0.1335087453635424
RPLYKNIVL	9	Unmodified	_RPLYKNIVL_					0	0	0		ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	ENSG00000115091|ENST00000263238|ACTR3	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.3514404296875	2	558.350409	1114.68626	0.95616	0.00053387	-1.6527	-0.00092278	-0.69653	-0.00038891	558.3495032263	83.609	2.0584	80.946	80.486	82.544	-2.6629					122	42	4	0	0	0	0.22961	3	6956	6945;6956;6994		71.296	14.241	1	1274500			50080	3061	41491	41519	54116;54117;54118	54117					0.1335087453635424
RPLYNVVKKVT	11	Unmodified	_RPLYNVVKKVT_					0	0	0			REV__nc|ENSG00000198589|P50851-2|LRBA;REV__ENST00000503716.5_1_4:151186876-151502511:-|nuORF	REV__nc|ENSG00000198589|P50851-2|LRBA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	439.2484130859375	3	439.606478	1315.79761	-0.27986	-0.00012303	-0.18648	-8.1978E-05	-0.46634	-0.00020501	439.6064052926808	52.025	0.50397	48.851	48.676	49.18	-3.1734					17	9	2	0	0	0	0.026145	1	3080	3080		17.833	4.3252	1	32655	+		50081	23032;26848	41492	41520	54119	54119					0.15233889173646276
RPLYYTSP	8	Unmodified	_RPLYYTSP_					0	0	0		ENSG00000170561|ENST00000302057|IRX2	ENSG00000170561|ENST00000302057|IRX2	ENSG00000170561|ENST00000302057|IRX2	MULTI-MSMS	OvCa9_classI_Rep2	2	498.76165771484375	2	498.761092	995.507631	3.1866	0.0015894	-2.8935	-0.0014432	0.29311	0.00014619	498.7595549175533	25.718	0.97412	23.009	22.778	23.752	-2.7097					28	22	2	0	0	0	0.7043	1	277	277		42.474	0	1	22557			50082	7117	41493	41521	54120	54120					0.009697848974610679
RPMAEGGK	8	Unmodified	_RPMAEGGK_					0	0	0			REV__ENST00000585280.5_1_17:45995848-46018744:-|nuORF	REV__ENST00000585280.5_1_17:45995848-46018744:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	422.5636291503906	2	423.218537	844.422522	0.20447	8.6537E-05	-4.1456	-0.0017545	-3.9411	-0.0016679	423.2166487583335	46.915	0.48906	46.915	46.719	47.208	0					16	10	2	0	0	0	0.028476	1	3323	3323		30.504	0	1	121810	+		50083	27854	41494	41522	54121	54121					-0.00591283839969492
RPMILPII	8	Unmodified	_RPMILPII_					0	0	0		tr|A0A553SPH8|A0A553SPH8_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1;tr|A0A7D6VWW2|A0A7D6VWW2_9CLOTRibonucleaseJOS=ClostridiumintestinaleOX=36845GN=rnjPE=3SV=1;tr|A0A553SNU9|A0A553SNU9_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	tr|A0A553SPH8|A0A553SPH8_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1;tr|A0A553SNU9|A0A553SNU9_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	tr|A0A553SNU9|A0A553SNU9_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	476.8056335449219	2	476.804248	951.593944	0.28579	0.00013626	3.5598	0.0016973	3.8456	0.0018336	476.80579878083404	40.986	1.3783	38.276	37.848	39.226	-2.7097					68	27	3	0	0	0	0.75915	1	2143	2143		20.482	0	1	368580			50084	33964;34046	41495	41523	54122	54122					0.11621073198489285
RPMKTSVL	8	Oxidation (M)	_RPM(Oxidation (M))KTSVL_		RPM(1)KTSVL		RPM(88)KTSVL	0	0	1		nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.270263671875	2	474.27077	946.526987	-0.26782	-0.00012702	-1.7515	-0.00083068	-2.0193	-0.0009577	474.27041733429513	40.911	2.4856	37.957	37.368	39.854	-2.9541					106	47	5	0	0	0	0.40148	1	1787	1787		87.754	24.448	1	443440			50085	15236	41496	41524	54123	54123		371			0.051584179167321054
RPMKTSVL	8	Oxidation (M)	_RPM(Oxidation (M))KTSVL_					0	0	1		nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	474.27077	946.526987	0.16713	7.9264E-05	-1.8033	-0.00085526	-1.6362	-0.00077599	474.27044689996603	40.737	1.7237	38.028	37.65	39.374	-2.7097	0.035259	-2.1441E-05	NaN	87.754	67	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81550			50086	15236	41496	41524				371			0.051584179167321054
RPMKTSVL	8	Unmodified	_RPMKTSVL_					0	0	0		nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	nc|ENSG00000189266|Q9NPJ4-2|PNRC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.2728271484375	2	466.273312	930.532072	-1.8161	-0.00084679	1.4777	0.000689	-0.3384	-0.00015779	466.2738382465089	49.971	1.7526	46.829	46.301	48.054	-3.1416					59	33	3	0	0	0	0.73205	1	2861	2861		35.618	1.4457	1	283940			50087	15236	41496	41525	54124	54124					0.06402721779340936
RPMNPPIL	8	Unmodified	_RPMNPPIL_					0	0	0			REV__ENST00000502634.1_1_5:20304156-20304381:-|nuORF	REV__ENST00000502634.1_1_5:20304156-20304381:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	469.27069091796875	2	469.26803	936.521507	0.77662	0.00036444	3.2759	0.0015373	4.0526	0.0019017	469.26939893955694	38.358	1.3386	35.432	35.156	36.495	-2.9264					51	26	3	0	0	0	0.59103	1	1491	1491		65.897	2.5912	1	270500	+		50088	26828	41497	41526	54125	54125					0.05070739124926149
RPMPLKKR	8	Unmodified	_RPMPLKKR_					0	0	0		ME3|p.V44M|1|0.26|ENSG00000151376|chr11:86671815-86671815|C/T|missense_variant	ME3|p.V44M|1|0.26|ENSG00000151376|chr11:86671815-86671815|C/T|missense_variant	ME3|p.V44M|1|0.26|ENSG00000151376|chr11:86671815-86671815|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	513.3281860351562	2	513.323671	1024.63279	1.1851	0.00060836	1.6526	0.00084833	2.8378	0.0014567	513.8246530993847	67.449	2.102	64.562	64.137	66.239	-2.8873					146	41	6	0	0	0	0.75241	1	2921	2921		25.45	0	1	2025700			50089	14828	41498	41527	54126	54126					0.1214579855284228
RPMRRQVIRA	10	Unmodified	_RPMRRQVIRA_					0	0	0		tr|A0A553SM29|A0A553SM29_NIACIPhosphoenolpyruvatecarboxylaseOS=NialliacirculansOX=1397GN=ppcPE=3SV=1	tr|A0A553SM29|A0A553SM29_NIACIPhosphoenolpyruvatecarboxylaseOS=NialliacirculansOX=1397GN=ppcPE=3SV=1	tr|A0A553SM29|A0A553SM29_NIACIPhosphoenolpyruvatecarboxylaseOS=NialliacirculansOX=1397GN=ppcPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	641.88232421875	2	641.88549	1281.75643	-4.6434	-0.0029805	0.11844	7.6024E-05	-4.5249	-0.0029045	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.81992	1	15402	15402		16.473	0.83134	1	543390			50090	33790	41499	41528	54127	54127					0.12681849653199606
RPMVDALT	8	Unmodified	_RPMVDALT_					0	0	0			REV__nc|ENSG00000175048|Q8IZN3-2|ZDHHC14	REV__nc|ENSG00000175048|Q8IZN3-2|ZDHHC14	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.7713928222656	2	451.741845	901.469137	0.44795	0.00020236	-0.49062	-0.00022163	-0.042666	-1.9274E-05	451.7414237036175	96.15	1.1126	93.725	93.355	94.468	-2.4256					43	21	3	0	0	0	0.028476	1	8441	8441		44.117	1.7207	1	133820	+		50091	21865	41500	41529	54128	54128					0.014461559912888333
RPMVDALT	8	Unmodified	_RPMVDALT_					0	0	0			REV__nc|ENSG00000175048|Q8IZN3-2|ZDHHC14	REV__nc|ENSG00000175048|Q8IZN3-2|ZDHHC14	MULTI-MATCH	OvCa9_classI_Rep2	2		2	451.741845	901.469137	1.7896	0.00080845	-1.5928	-0.00071956	0.19678	8.8892E-05	451.74093123169007	94.743	1.2307	93.643	93.263	94.494	-1.0995	-0.019692	-0.0010345	NaN	44.117	53	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77109	+		50092	21865	41500	41529							0.014461559912888333
RPMVDALT	8	Unmodified	_RPMVDALT_					0	0	0			REV__nc|ENSG00000175048|Q8IZN3-2|ZDHHC14	REV__nc|ENSG00000175048|Q8IZN3-2|ZDHHC14	MULTI-MATCH	OvCa9_classI_Rep3	3		2	451.741845	901.469137	-0.55549	-0.00025094	0.62815	0.00028376	0.072661	3.2824E-05	451.7419551761766	95.516	1.2435	93.621	93.261	94.504	-1.8956	-0.042102	0.00097215	NaN	44.117	42	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122690	+		50093	21865	41500	41529							0.014461559912888333
RPNCGRLPTS	10	Unmodified	_RPNCGRLPTS_					0	0	0			REV__chr14:24174555-24175543|88|40.78|0.62|6.03|+|2|TE_info:AluSx1,AluSx1_dup81828,Alu,SINE,donor,-,24174285,24174555|None,REC8|1	REV__chr14:24174555-24175543|88|40.78|0.62|6.03|+|2|TE_info:AluSx1,AluSx1_dup81828,Alu,SINE,donor,-,24174285,24174555|None,REC8|1	MULTI-MSMS	OvCa9_classI_Rep2	2	550.7828979492188	2	550.785107	1099.55566	1.3458	0.00074124	-4.4561	-0.0024543	-3.1103	-0.0017131	550.7825579804899	42.558	0.98736	39.848	39.621	40.608	-2.7097					51	19	3	0	0	0	0.6104	1	2309	2309		40.778	5.1599	1	269590	+		50094	15907	41501	41530	54129	54129					0.009865355458714475
RPNEEQSL	8	Unmodified	_RPNEEQSL_					0	0	0			REV__ENSG00000186448|ENST00000344387|ZNF197	REV__ENSG00000186448|ENST00000344387|ZNF197	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.7422790527344	2	486.740888	971.467223	-0.41628	-0.00020262	0.66837	0.00032532	0.25209	0.0001227	486.7410399017421	46.496	1.2414	43.424	42.876	44.117	-3.0724					52	23	3	0	0	0	0.58851	1	2459	2459		66.429	2.222	1	415680	+		50095	22586	41502	41531	54130	54130					-0.01965181492960255
RPNETLPQEDG	11	Unmodified	_RPNETLPQEDG_					0	0	0			REV__ENSG00000115138|ENST00000395826|POMC	REV__ENSG00000115138|ENST00000395826|POMC	MULTI-MSMS	OvCa9_classI_Rep4_	4	628.3023071289062	2	628.299298	1254.58404	0.15746	9.8933E-05	2.327	0.001462	2.4844	0.001561	628.3007437507579	57.255	1.5713	53.91	53.527	55.098	-3.3449					94	30	4	0	0	0	0.5804	1	3729	3729		46.457	2.0796	1	686880	+		50096	18220	41503	41532	54131	54131					-0.03306488063844881
RPNGGPRAL	9	Unmodified	_RPNGGPRAL_					0	0	0		ENSG00000182742|ENST00000332503|HOXB4	ENSG00000182742|ENST00000332503|HOXB4	ENSG00000182742|ENST00000332503|HOXB4	MULTI-MSMS	OvCa9_classI_Rep4_	4	469.26971435546875	2	469.26995	936.525347	0.77662	0.00036444	-0.81534	-0.00038261	-0.03872	-1.817E-05	469.26939893955694	38.358	1.3386	35.432	35.156	36.495	-2.9264					51	26	3	0	0	0	0.31747	1	1480	1480		60.972	15.02	1	270500			50097	8020	41504	41533	54132	54132					0.0545454494298383
RPNGLFSF	8	Unmodified	_RPNGLFSF_					0	0	0			REV__ENST00000447266.6_1_6:76311842-76312094:+|nuORF	REV__ENST00000447266.6_1_6:76311842-76312094:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	469.27069091796875	2	469.248152	936.481751	0.84857	0.00039819	3.1337	0.0014705	3.9823	0.0018687	469.2493446042828	38.276	0.44519	35.35	35.156	35.601	-2.9264					12	8	2	0	0	0	0.028476	1	1491	1491		71.296	2.811	1	11510	+		50098	25912	41505	41534	54133	54133					0.010969354458552516
RPNGVITGL	9	Unmodified	_RPNGVITGL_					0	0	0		nc|ENSG00000122068|Q96QD9-3|FYTTD1;nc|ENSG00000122068|Q96QD9-2|FYTTD1;ENSG00000122068|ENST00000241502|FYTTD1;nc|ENSG00000122068|Q96QD9-4|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	MULTI-MSMS	OvCa9_classI_Rep2	2	463.7748718261719	2	463.774534	925.534515	-0.61933	-0.00028723	0.40303	0.00018691	-0.21631	-0.00010032	463.77457919552603	76.987	2.132	75.198	74.53	76.662	-1.7894					95	40	4	0	0	0	0.10363	8	6377	6355;6361;6364;6370;6377;6383;6395;6409		96.19	22.216	1	763750			50099	3516	41506	41535	54134;54135;54136;54137;54138;54139;54140;54141	54138					0.06876893508649573
RPNGVITGL	9	Unmodified	_RPNGVITGL_					0	0	0		nc|ENSG00000122068|Q96QD9-3|FYTTD1;nc|ENSG00000122068|Q96QD9-2|FYTTD1;ENSG00000122068|ENST00000241502|FYTTD1;nc|ENSG00000122068|Q96QD9-4|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	MULTI-MSMS	OvCa9_classI_Rep3	3	463.7746276855469	2	463.774534	925.534515	-0.97	-0.00044986	0.70865	0.00032865	-0.26135	-0.00012121	463.77482731526084	77.012	1.6353	74.64	74.295	75.93	-2.3715					75	31	4	0	0	0	0.036687	5	3992	3992;3996;4002;4009;4016		129.68	47.378	1	1234800			50100	3516	41506	41535	54142;54143;54144;54145;54146	54142					0.06876893508649573
RPNGVITGL	9	Unmodified	_RPNGVITGL_					0	0	0		nc|ENSG00000122068|Q96QD9-3|FYTTD1;nc|ENSG00000122068|Q96QD9-2|FYTTD1;ENSG00000122068|ENST00000241502|FYTTD1;nc|ENSG00000122068|Q96QD9-4|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.7748107910156	2	463.774534	925.534515	-0.37205	-0.00017255	-0.33539	-0.00015555	-0.70744	-0.00032809	463.7743719429859	78.051	2.3369	75.235	74.536	76.873	-2.8165					87	48	3	0	0	0	0.14998	2	6257	6257;6265		84.916	4.9763	1	1890600			50101	3516	41506	41535	54147;54148	54147					0.06876893508649573
RPNIKYKV	8	Unmodified	_RPNIKYKV_					0	0	0			REV__tr|A0A7D6ZPF0|A0A7D6ZPF0_9CLOTTripletyrosinemotif-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20015PE=4SV=1	REV__tr|A0A7D6ZPF0|A0A7D6ZPF0_9CLOTTripletyrosinemotif-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20015PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.2455139160156	2	509.313826	1016.6131	-0.42961	-0.00021881	-0.014265	-7.2653E-06	-0.44388	-0.00022607	509.3137121965205	36.007	0.73555	36.007	35.707	36.442	0					28	15	3	0	0	0	0.028476	1	1849	1849		19.36	0	1	291360	+		50102	32134	41507	41536	54149	54149					0.10545745813737994
RPNIRKTGQ	9	Unmodified	_RPNIRKTGQ_					0	0	0		nc|ENSG00000145734|A6H8Y1-2|BDP1;ENST00000508917.6_1_5:70751704-70841064:+|nuORF;nc|ENSG00000145734|A6H8Y1-7|BDP1;nc|ENSG00000145734|A6H8Y1-6|BDP1;ENSG00000145734|ENST00000358731|BDP1	nc|ENSG00000145734|A6H8Y1-2|BDP1	nc|ENSG00000145734|A6H8Y1-2|BDP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.3389892578125	2	535.314889	1068.61522	-2.9182	-0.0015621	-3.9223	-0.0020997	-6.8405	-0.0036618	535.8149637595455	49.807	0.5709	46.665	46.403	46.974	-3.1416					16	10	2	0	0	0	0.027462	1	2823	2823		37.159	0	1	26418			50103	5241	41508	41537	54150	54150					0.08366174551542827
RPNKLSAK	8	Unmodified	_RPNKLSAK_					0	0	0			REV__tr|A0A553SKT5|A0A553SKT5_NIACIOctanoyltransferaseLipMOS=NialliacirculansOX=1397GN=lipMPE=3SV=1	REV__tr|A0A553SKT5|A0A553SKT5_NIACIOctanoyltransferaseLipMOS=NialliacirculansOX=1397GN=lipMPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	457.28228759765625	2	457.282526	912.550499	0.47425	0.00021687	-0.49128	-0.00022466	-0.017036	-7.7904E-06	457.2821592199895	58.808	2.4649	56.028	55.184	57.649	-2.7801					125	47	5	0	0	0	0.72896	1	4258	4258		37.159	1.5408	1	550990	+		50104	30151	41509	41538	54151	54151					0.09072599745559273
RPNPPVRNL	9	Unmodified	_RPNPPVRNL_					0	0	0		ENSG00000113657|ENST00000343218|DPYSL3;nc|ENSG00000113657|Q14195|DPYSL3	ENSG00000113657|ENST00000343218|DPYSL3	ENSG00000113657|ENST00000343218|DPYSL3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.8433227539062	2	531.811982	1061.60941	-2.7669	-0.0014714	4.43	0.0023559	1.6632	0.00088449	532.316406554725	87.813	0.45303	85.186	84.85	85.303	-2.6269					11	8	2	0	0	0	0.027448	1	7488	7488		53.351	14.545	1	26393			50105	2989	41510	41539	54152	54152					0.08107076039891581
RPNQKYVDF	9	Unmodified	_RPNQKYVDF_					0	0	0			REV__nc|ENSG00000136305|Q9UHD4|CIDEB	REV__nc|ENSG00000136305|Q9UHD4|CIDEB	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8029174804688	2	583.80128	1165.58801	0.97841	0.0005712	1.9394	0.0011322	2.9178	0.0017034	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.70685	1	1322	1322		15.642	0	1	155970	+		50106	28873	41511	41540	54153	54153					0.011836462205110365
RPNRLIVDE	9	Unmodified	_RPNRLIVDE_					0	0	0		ENSG00000165280|ENST00000358901|VCP;ENST00000493886.5_1_9:35062192-35072350:-|nuORF;VCP|p.I309Sfs*28|1|0.03|ENSG00000165280|chr9:35062236-35062237|-/GGCTGAAGTAGGAGAATTGC|frameshift_variant;VCP|p.A310Lfs*47|1|0.04|ENSG00000165280|chr9:35062234-35062235|-/TACTCAG|frameshift_variant;VCP|p.P648Lfs*31|1|0.32|ENSG00000165280|chr9:35059554-35059554|G/-|frameshift_variant	ENSG00000165280|ENST00000358901|VCP	ENSG00000165280|ENST00000358901|VCP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.7998046875	2	556.314554	1110.61456	1.9647	0.001093	3.3883	0.001885	5.353	0.002978	556.3167657046754	67.685	0.29549	64.195	64.037	64.333	-3.4902					6	5	2	0	0	0	0.027426	1	4999	4999		66.429	7.6473	1	11448			50107	6545	41512	41541	54154	54154					0.0636733511184957
RPNSLPLNL	9	Unmodified	_RPNSLPLNL_					0	0	0		ENSG00000168014|ENST00000334126|C2CD3	ENSG00000168014|ENST00000334126|C2CD3	ENSG00000168014|ENST00000334126|C2CD3	MULTI-SECPEP	OvCa9_classI_Rep2	2	511.8441162109375	2	512.300916	1022.58728	-0.38199	-0.00019569	-2.3715	-0.0012149	-2.7535	-0.0014106	512.2992504903931	98.603	0.44567	97.71	97.361	97.807	-0.89306					12	8	2	0	0	0	0.027446	1	8941	8941		60.118	0	1	20312			50108	6863	41513	41542	54155	54155					0.07688851571458599
RPNSLPLNL	9	Unmodified	_RPNSLPLNL_					0	0	0		ENSG00000168014|ENST00000334126|C2CD3	ENSG00000168014|ENST00000334126|C2CD3	ENSG00000168014|ENST00000334126|C2CD3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	512.300916	1022.58728	-0.16622	-8.5154E-05	-2.9495	-0.001511	-3.1157	-0.0015962	512.300001057044	99.511	0.61083	97.826	97.322	97.932	-1.685	0.058032	-0.00031057	NaN	75.043	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47548			50109	6863	41513	41542							0.07688851571458599
RPNTLISLSE	10	Unmodified	_RPNTLISLSE_					0	0	0			REV__ENSG00000160803|ENST00000368309|UBQLN4	REV__ENSG00000160803|ENST00000368309|UBQLN4	MULTI-MSMS	OvCa9_classI_Rep2	2	566.31201171875	2	565.31422	1128.61389	-0.33863	-0.00019143	-0.4419	-0.00024981	-0.78053	-0.00044124	565.3146090333048	59.402	2.1276	56.622	55.838	57.966	-2.7801					203	40	7	0	0	0	0.5675	1	4361	4361		45.972	1.5951	1	1937000	+		50110	20675	41514	41543	54156	54156					0.054724956721202034
RPNTPKTLL	9	Unmodified	_RPNTPKTLL_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;nc|ENSG00000083312|Q92973-3|TNPO1;ENST00000436471.2_1_17:20384856-20385102:-|nuORF;ENST00000587155.1_1_19:12812547-12813748:-|nuORF	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3173828125	2	520.316566	1038.61858	-0.31012	-0.00016136	0.060895	3.1685E-05	-0.24922	-0.00012968	520.3164323055377	57.678	1.8966	54.886	54.228	56.125	-2.792					67	37	3	0	0	0	0.37135	2	4134	4129;4134		54.776	20.604	1	222010			50111	2471	41515	41544	54157;54158	54158					0.10081424605573375
RPNTPKTLL	9	Unmodified	_RPNTPKTLL_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;nc|ENSG00000083312|Q92973-3|TNPO1;ENST00000436471.2_1_17:20384856-20385102:-|nuORF;ENST00000587155.1_1_19:12812547-12813748:-|nuORF	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.31787109375	2	520.316566	1038.61858	-0.50275	-0.00026159	0.23951	0.00012462	-0.26324	-0.00013697	520.3165115408596	58.323	1.697	54.931	54.6	56.297	-3.392					75	33	4	0	0	0	0.1804	3	3843	3831;3843;3856		79.713	26.361	1	437820			50112	2471	41515	41544	54159;54160;54161	54160					0.10081424605573375
RPPAAPSRPT	10	Unmodified	_RPPAAPSRPT_					0	0	0		nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;LDLR-DNM2|7|fusion;LDLR-DNM2|8|fusion;LDLR-DNM2|5|fusion;LDLR-DNM2|6|fusion;LDLR-DNM2|3|fusion;LDLR-DNM2|4|fusion;LDLR-DNM2|9|fusion;LDLR-DNM2|10|fusion;LDLR-DNM2|1|fusion;LDLR-DNM2|2|fusion	nc|ENSG00000079805|P50570-3|DNM2;LDLR-DNM2|7|fusion	nc|ENSG00000079805|P50570-3|DNM2	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.296630859375	2	525.296165	1048.57778	-1.074	-0.00056415	-1.0058	-0.00052833	-2.0797	-0.0010925	525.296559981774	48.331	1.5506	45.223	44.938	46.489	-3.1077					85	29	4	0	0	0	0.59317	1	2687	2687		42.864	1.4377	1	1035600			50113	1621;14795	41516	41545	54162	54162					0.05543083285942885
RPPAPENAP	9	Unmodified	_RPPAPENAP_					0	0	0		SH3D21|p.N496Qfs*31|1|0.1|ENSG00000214193|chr1:36320475-36320476|-/C|frameshift_variant;nc|ENSG00000214193|A4FU49|SH3D21;nc|ENSG00000214193|A4FU49-3|SH3D21;ENSG00000214193|ENST00000453908|SH3D21	SH3D21|p.N496Qfs*31|1|0.1|ENSG00000214193|chr1:36320475-36320476|-/C|frameshift_variant	SH3D21|p.N496Qfs*31|1|0.1|ENSG00000214193|chr1:36320475-36320476|-/C|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	474.7724914550781	2	474.748516	947.482479	1.2586	0.00059754	3.5117	0.0016672	4.7703	0.0022647	474.7500832928763	37.686	0.3997	34.794	34.641	35.041	-2.8925					12	7	2	0	0	0	0.027462	1	1393	1393		56.721	8.8055	1	11285			50114	9166	41517	41546	54163	54163					0.006637300948909797
RPPAPSRAP	9	Unmodified	_RPPAPSRAP_					0	0	0		ENST00000397581.6_1_9:14313743-14314127:-|nuORF	ENST00000397581.6_1_9:14313743-14314127:-|nuORF	ENST00000397581.6_1_9:14313743-14314127:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	474.7718505859375	2	474.772326	947.530098	-2.2434	-0.0010651	2.3114	0.0010974	0.067932	3.2252E-05	474.77329814512956	37.51	1.38	34.8	34.287	35.667	-2.7097					69	27	4	0	0	0	0.55011	1	1696	1696		37.812	0.65241	1	277560			50115	11348	41518	41547	54164	54164					0.05423429085749376
RPPAPSRAP	9	Unmodified	_RPPAPSRAP_					0	0	0		ENST00000397581.6_1_9:14313743-14314127:-|nuORF	ENST00000397581.6_1_9:14313743-14314127:-|nuORF	ENST00000397581.6_1_9:14313743-14314127:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.772705078125	2	474.772326	947.530098	1.4458	0.0006864	-1.8304	-0.00086903	-0.38467	-0.00018263	474.7714054184023	37.259	2.3363	34.367	33.695	36.031	-2.8925					116	46	4	0	0	0	0.53483	1	1381	1381		39.253	0.44669	1	1197600			50116	11348	41518	41547	54165	54165					0.05423429085749376
RPPASTHLSR	10	Unmodified	_RPPASTHLSR_					0	0	0		ENST00000577646.5_3_17:38465473-38487137:+|nuORF	ENST00000577646.5_3_17:38465473-38487137:+|nuORF	ENST00000577646.5_3_17:38465473-38487137:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.3115844726562	2	561.312346	1120.61014	2.0173	0.0011323	-2.5798	-0.0014481	-0.56253	-0.00031575	561.3107483489023	34.979	1.4503	32.13	30.991	32.441	-2.849					63	28	3	0	0	0	0.64697	1	1079	1079		36.447	0	1	111970			50117	13959	41519	41548	54166	54166					0.05465870688931318
RPPASTHLSR	10	Unmodified	_RPPASTHLSR_					0	0	0		ENST00000577646.5_3_17:38465473-38487137:+|nuORF	ENST00000577646.5_3_17:38465473-38487137:+|nuORF	ENST00000577646.5_3_17:38465473-38487137:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	561.312346	1120.61014	-1.1414	-0.0006407	-9.5391	-0.0053544	-10.68	-0.0059951	561.306875297711	34.446	0.44588	31.736	31.513	31.959	-2.7097	-0.1967	-0.0068696	NaN	36.447	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24629			50118	13959	41519	41548							0.05465870688931318
RPPCPGPI	8	Unmodified	_RPPCPGPI_					0	0	0		ENST00000354336.7_1_22:21305467-21305554:+|nuORF	ENST00000354336.7_1_22:21305467-21305554:+|nuORF	ENST00000354336.7_1_22:21305467-21305554:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	418.9280090332031	2	418.725998	835.437443	0.67472	0.00028252	0.33814	0.00014159	1.0129	0.00042411	418.7260266490537	103.28	0.73699	101.84	101.55	102.29	-1.4347					17	13	2	0	0	0	0.028476	1	7170	7170		29.842	8.8946	1	19331			50119	10661	41520	41549	54167	54167					0.013142080280204027
RPPDPPLPK	9	Unmodified	_RPPDPPLPK_					0	0	0			REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	REV__nc|ENSG00000102531|Q9Y2H6-2|FNDC3A	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.8136291503906	2	508.798009	1015.58147	-0.7727	-0.00039315	3.9301	0.0019996	3.1574	0.0016065	508.7996014450028	75.161	0.52916	72.75	72.39	72.919	-2.4106					19	10	3	0	0	0	0.027185	1	3744	3744		71.877	22.436	1	174630	+		50120	17559	41521	41550	54168	54168					0.07429753059795985
RPPDSSPVQK	10	Unmodified	_RPPDSSPVQK_					0	0	0			REV__ENSG00000099399|ENST00000378988|MAGEB2	REV__ENSG00000099399|ENST00000378988|MAGEB2	MULTI-MSMS	OvCa9_classI_Rep2	2	555.7982177734375	2	555.798737	1109.58292	0.67356	0.00037436	-1.2184	-0.00067718	-0.54484	-0.00030282	555.7980692819577	66.887	2.2263	64.226	63.651	65.878	-2.661					106	44	4	0	0	0	0.48398	2	5171	5171;5219		56.434	12.057	1	1196600	+		50121	17327	41522	41551	54169;54170	54169					0.03251342357907561
RPPDSSPVQK	10	Unmodified	_RPPDSSPVQK_					0	0	0			REV__ENSG00000099399|ENST00000378988|MAGEB2	REV__ENSG00000099399|ENST00000378988|MAGEB2	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.7998046875	2	555.798737	1109.58292	1.7561	0.00097606	-2.5165	-0.0013986	-0.76033	-0.00042259	555.7973607048004	67.728	1.8648	64.237	63.888	65.753	-3.4902					91	37	4	0	0	0	0.53807	1	4999	4999		49.536	1.8787	1	2230700	+		50122	17327	41522	41551	54171	54171					0.03251342357907561
RPPFNRHIVTL	11	Unmodified	_RPPFNRHIVTL_					0	0	0		ENSG00000203857|ENST00000369413|HSD3B1	ENSG00000203857|ENST00000369413|HSD3B1	ENSG00000203857|ENST00000369413|HSD3B1	MULTI-MSMS	OvCa9_classI_Rep2	2	450.5973815917969	3	450.598206	1348.77279	2.0912	0.00094228	-2.5765	-0.001161	-0.48532	-0.00021869	450.59700338359727	73.597	2.3004	71.197	70.687	72.988	-2.3999					152	43	5	0	0	0	0.62561	1	6023	6023		42.338	1.258	1	946140			50123	8936	41523	41552	54172	54172					0.1123525409091144
RPPFNRHIVTL	11	Unmodified	_RPPFNRHIVTL_					0	0	0		ENSG00000203857|ENST00000369413|HSD3B1	ENSG00000203857|ENST00000369413|HSD3B1	ENSG00000203857|ENST00000369413|HSD3B1	MULTI-MSMS	OvCa9_classI_Rep3	3	450.5990295410156	3	450.598206	1348.77279	-0.36922	-0.00016637	-0.044439	-2.0024E-05	-0.41366	-0.0001864	450.5981883929496	75.04	3.3509	72.629	71.944	75.295	-2.4106					204	65	5	0	0	0	0.34475	7	3769	3751;3757;3763;3769;3775;3782;3800		65.157	25.918	1	1091400			50124	8936	41523	41552	54173;54174;54175;54176;54177;54178;54179	54176					0.1123525409091144
RPPGHILS	8	Unmodified	_RPPGHILS_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	MULTI-MSMS	OvCa99_classI_Rep5	1	438.7570495605469	2	438.756144	875.497735	0.81086	0.00035577	-0.5292	-0.00023219	0.28166	0.00012358	438.7557077083029	60.261	0.94561	60.261	60.039	60.984	0					47	22	3	0	0	0	0.67745	1	5239	5239		47.916	1.9636	1	3135700			50125	2180	41524	41553	54180	54180					0.05500641682760943
RPPGHILS	8	Unmodified	_RPPGHILS_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	438.756144	875.497735	-0.050748	-2.2266E-05	-1.6814	-0.00073773	-1.7322	-0.00076	438.7553663656523	63.814	0.67832	60.339	60.204	60.882	-3.475	0.039329	-0.00079372	NaN	47.916	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24607			50126	2180	41524	41553							0.05500641682760943
RPPGLVVPVTG	11	Unmodified	_RPPGLVVPVTG_					0	0	0			REV__ENSG00000180549|ENST00000314412|FUT7	REV__ENSG00000180549|ENST00000314412|FUT7	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.3307495117188	2	546.332216	1090.64988	0.57396	0.00031357	-3.4319	-0.0018749	-2.8579	-0.0015614	546.3302191318373	36.413	1.4954	33.564	33.09	34.585	-2.849					89	29	4	0	0	0	0.65947	2	1256	1256;1282		39.253	5.0803	1	390640	+		50127	22181	41525	41554	54181;54182	54181					0.10817997639651367
RPPGPKDLVL	10	Unmodified	_RPPGPKDLVL_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa9_classI_Rep2	2	546.3299560546875	2	546.332216	1090.64988	-2.6411	-0.0014429	-0.058936	-3.2199E-05	-2.7001	-0.0014751	546.3320576477423	36.639	1.8723	33.93	33.647	35.519	-2.7097					83	37	3	0	0	0	0.6104	1	1578	1578		40.778	5.1599	1	180730	+		50128	28942;32737	41526	41555	54183	54183					0.10817997639628629
RPPGRAKAEP	10	Unmodified	_RPPGRAKAEP_					0	0	0			REV__ENST00000345016.9_1_19:2151317-2151458:-|nuORF	REV__ENST00000345016.9_1_19:2151317-2151458:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.7880859375	2	539.809439	1077.60433	-1.2668	-0.0006838	0.89384	0.0004825	-0.37292	-0.0002013	539.8099249734133	40.18	0.82403	37.226	36.913	37.737	-2.9541					43	15	4	0	0	0	0.026867	1	1756	1756		28.081	22.16	1	94088	+		50129	24687	41527	41556	54184	54184					0.06862772177260013
RPPGRAKAEP	10	Unmodified	_RPPGRAKAEP_					0	0	0			REV__ENST00000345016.9_1_19:2151317-2151458:-|nuORF	REV__ENST00000345016.9_1_19:2151317-2151458:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	539.809439	1077.60433	-1.0282	-0.00055505	0.9437	0.00050942	-0.084524	-4.5627E-05	539.8099676643603	39.95	0.59829	37.241	37.002	37.601	-2.7097	0.007186	3.1585E-05	NaN	28.081	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17789	+		50130	24687	41527	41556							0.06862772177260013
RPPGRYYRR	9	Unmodified	_RPPGRYYRR_					0	0	0		HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|74|3|sense	HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|74|3|sense	HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|74|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.5865783691406	3	407.563496	1219.66866	0.45879	0.00018699	0.20352	8.2949E-05	0.66232	0.00026994	407.5640133128363	33.945	0.33648	33.945	33.824	34.161	0					9	6	2	0	0	0	0.027462	1	1612	1612		29.17	6.5904	1	15192			50131	14438	41528	41557	54185	54185					0.06760972054053127
RPPGRYYRR	9	Unmodified	_RPPGRYYRR_					0	0	0		HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|74|3|sense	HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|74|3|sense	HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|74|3|sense	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	407.563496	1219.66866	2.1785	0.00088788	5.6098	0.0022864	7.7883	0.0031742	407.5658292569089	36.559	0.44766	33.666	33.446	33.894	-2.8925	-0.13913	0.0010023	NaN	29.17	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15983			50132	14438	41528	41557							0.06760972054053127
RPPGTPRAP	9	Unmodified	_RPPGTPRAP_					0	0	0		TCTN1|p.Y516*|1|0.08|ENSG00000204852|chr12:110647264-110647264|C/-|frameshift_variant;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1;nc|ENSG00000204852|Q2MV58-3|TCTN1	TCTN1|p.Y516*|1|0.08|ENSG00000204852|chr12:110647264-110647264|C/-|frameshift_variant	TCTN1|p.Y516*|1|0.08|ENSG00000204852|chr12:110647264-110647264|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.7720947265625	2	474.772326	947.530098	1.4458	0.0006864	-1.8304	-0.00086903	-0.38467	-0.00018263	474.7714054184023	37.259	2.3363	34.367	33.695	36.031	-2.8925					116	46	4	0	0	0	0.27001	2	1406	1357;1406		66.429	1.618	1	1197600			50133	9032	41529	41558	54186;54187	54187					0.05423429085749376
RPPGVHAGIDL	11	Unmodified	_RPPGVHAGIDL_					0	0	0			REV__nc|ENSG00000142513|Q9BZG2-2|ACP4	REV__nc|ENSG00000142513|Q9BZG2-2|ACP4	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.318603515625	2	566.317097	1130.61964	0.58696	0.00033241	-1.4965	-0.00084747	-0.90949	-0.00051506	566.3164840575369	56.132	1.4188	52.837	52.464	53.883	-3.2944					60	26	4	0	0	0	0.69455	1	3574	3574		31.53	0.96095	1	491710	+		50134	28901	41530	41559	54188	54188					0.05955638974455724
RPPGVHAGIDL	11	Unmodified	_RPPGVHAGIDL_					0	0	0			REV__nc|ENSG00000142513|Q9BZG2-2|ACP4	REV__nc|ENSG00000142513|Q9BZG2-2|ACP4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	566.317097	1130.61964	-1.0232	-0.00057945	-1.1878	-0.00067266	-2.211	-0.0012521	566.3172832467103	55.56	1.4387	52.756	52.282	53.721	-2.804	-0.040822	0.00032478	NaN	31.53	46	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162920	+		50135	28901	41530	41559							0.05955638974455724
RPPGVHAGIDL	11	Unmodified	_RPPGVHAGIDL_					0	0	0			REV__nc|ENSG00000142513|Q9BZG2-2|ACP4	REV__nc|ENSG00000142513|Q9BZG2-2|ACP4	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	566.317097	1130.61964	0.58696	0.00033241	-1.4965	-0.00084747	-0.90949	-0.00051506	566.3164840575369	56.132	1.4188	52.837	52.464	53.883	-3.2944	0.040822	-2.483E-05	NaN	31.53	60	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	491710	+		50136	28901	41530	41559							0.05955638974455724
RPPKEPPRH	9	Unmodified	_RPPKEPPRH_					0	0	0			REV__ENST00000465821.5_1_9:130706892-130710398:-|nuORF	REV__ENST00000465821.5_1_9:130706892-130710398:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.3172607421875	2	557.317432	1112.62031	1.5566	0.00086754	-2.106	-0.0011737	-0.54938	-0.00030618	557.3163824775255	35.608	1.7447	32.759	32.441	34.186	-2.849					93	34	3	0	0	0	0.44568	1	1171	1171		47.657	1.6851	1	1396800	+		50137	21252	41531	41560	54189	54189					0.0685047841418509
RPPKKTRGK	9	Unmodified	_RPPKKTRGK_					0	0	0			REV__ENST00000257181.9_1_1:52883535-52883676:+|nuORF	REV__ENST00000257181.9_1_1:52883535-52883676:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	534.3432006835938	2	534.343449	1066.67235	1.9733	0.0010544	-1.9799	-0.0010579	-0.0065619	-3.5063E-06	534.3423036869325	64.763	1.4145	61.77	61.395	62.809	-2.9933					70	27	3	0	0	0	0.5811	1	2588	2588		34.173	0	1	193540	+		50138	23898	41532	41561	54190	54190					0.1416764182793031
RPPKVKMEQRE	11	Unmodified	_RPPKVKMEQRE_					0	0	0		ENST00000489277.5_1_1:28527761-28556683:-|nuORF;ENSG00000126698|ENST00000263697|DNAJC8	ENST00000489277.5_1_1:28527761-28556683:-|nuORF	ENST00000489277.5_1_1:28527761-28556683:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	466.59442138671875	3	466.594244	1396.7609	-0.16526	-7.7108E-05	-0.60252	-0.00028113	-0.76778	-0.00035824	466.594173265385	29.96	0.55025	29.96	29.686	30.236	0					27	10	4	0	0	0	0.66269	1	1116	1116		38.96	10.383	1	149940			50139	3792	41533	41562	54191	54191					0.078392692854095
RPPLEEKKAL	10	Unmodified	_RPPLEEKKAL_					0	0	0		ENSG00000169499|ENST00000617275|PLEKHA2	ENSG00000169499|ENST00000617275|PLEKHA2	ENSG00000169499|ENST00000617275|PLEKHA2	MULTI-MSMS	OvCa9_classI_Rep4_	4	590.8575439453125	2	590.856055	1179.69756	-1.0139	-0.00059905	0.83208	0.00049164	-0.18179	-0.00010741	590.8565099387757	44.839	1.3958	41.801	41.514	42.909	-3.0385					57	26	3	0	0	0	0.30325	1	2260	2260		80.455	21.673	1	325380			50140	7013	41534	41563	54192	54192					0.11489651839838189
RPPLEEKKAL	10	Unmodified	_RPPLEEKKAL_					0	0	0		ENSG00000169499|ENST00000617275|PLEKHA2	ENSG00000169499|ENST00000617275|PLEKHA2	ENSG00000169499|ENST00000617275|PLEKHA2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	590.856055	1179.69756	-0.23642	-0.00013969	-0.13619	-8.0471E-05	-0.37262	-0.00022016	590.855826459293	44.595	1.044	41.886	41.603	42.647	-2.7097	0.042521	-0.00071444	NaN	80.455	46	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103140			50141	7013	41534	41563							0.11489651839838189
RPPLFQRI	8	Unmodified	_RPPLFQRI_					0	0	0		ENST00000572151.1_1_17:78328611-78388856:-|nuORF;ENST00000575034.5_1_17:78328973-78388844:-|nuORF;ENST00000573394.1_1_17:78355003-78388943:-|nuORF	ENST00000572151.1_1_17:78328611-78388856:-|nuORF	ENST00000572151.1_1_17:78328611-78388856:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.7879028320312	2	513.813993	1025.61343	-0.77292	-0.00039714	1.1577	0.00059486	0.38481	0.00019772	514.316127345712	39.2	1.0894	36.49	36.062	37.152	-2.7097					56	21	3	0	0	0	0.028476	1	1924	1924		40.573	3.4135	1	70021			50142	13909	41535	41564	54193	54193					0.1016516553358997
RPPLNPDSI	9	Unmodified	_RPPLNPDSI_					0	0	0			REV__nc|ENSG00000154310|Q9UKE5-6|TNIK	REV__nc|ENSG00000154310|Q9UKE5-6|TNIK	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.77862548828125	2	504.777274	1007.53999	-0.42508	-0.00021457	-0.17598	-8.883E-05	-0.60105	-0.0003034	504.77710651401486	57.709	2.0735	54.364	53.628	55.702	-3.3449					118	40	4	0	0	0	0.35444	1	3809	3809		56.721	0.28726	1	342660	+		50143	20378	41536	41565	54194	54194					0.03652572300461543
RPPLQLQEL	9	Unmodified	_RPPLQLQEL_					0	0	0		nc|ENSG00000116337|Q01433-4|AMPD2;ENST00000486282.6_1_1:110163774-110168851:+|nuORF	nc|ENSG00000116337|Q01433-4|AMPD2	nc|ENSG00000116337|Q01433-4|AMPD2	MULTI-MSMS	OvCa99_classI_Rep5	1	547.3247680664062	2	547.321848	1092.62914	1.0469	0.000573	4.1815	0.0022886	5.2284	0.0028616	547.3240269869281	123.49	1.7489	123.49	123.14	124.89	0					84	37	4	0	0	0	0.19758	1	14319	14319		76.774	10.971	1	4187200			50144	14980	41537	41566	54195	54195					0.0865340725997612
RPPNYSGTIAL	11	Unmodified	_RPPNYSGTIAL_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-MSMS	OvCa9_classI_Rep2	2	594.8218383789062	2	594.822212	1187.62987	-1.5219	-0.00090526	0.27128	0.00016136	-1.2506	-0.00074389	594.8223299589429	85.766	2.3277	84.275	83.702	86.03	-1.4906					127	45	5	0	0	0	0.064584	7	7409	7409;7414;7426;7431;7438;7452;7458		106.68	43.149	1	948050			50145	14937	41538	41567	54196;54197;54198;54199;54200;54201;54202	54196					0.043562019090586546
RPPNYSGTIAL	11	Unmodified	_RPPNYSGTIAL_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MSMS	OvCa9_classI_Rep3	3	594.8228149414062	2	594.822212	1187.62987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.468	1	84.291	83.791	84.791	-2.1768								0	0	0	0.019428	1	5143	5143		88.177	21.215	1				50146	14937	41538	41567	54203	54203					0.043562019090586546
RPPNYSGTIAL	11	Unmodified	_RPPNYSGTIAL_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MSMS	OvCa9_classI_Rep3	3	594.8228759765625	2	594.822212	1187.62987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.511	1	84.334	83.834	84.834	-2.1768								0	0	0	0.024906	1	5148	5148		85.862	5.4072	1				50147	14937	41538	41567	54204	54204					0.043562019090586546
RPPNYSGTIAL	11	Unmodified	_RPPNYSGTIAL_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MSMS	OvCa9_classI_Rep3	3	594.8230590820312	2	594.822212	1187.62987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.554	1	84.378	83.878	84.878	-2.1768								0	0	0	0.0014535	1	5153	5153		104.01	28.97	1				50148	14937	41538	41567	54205	54205					0.043562019090586546
RPPNYSGTIAL	11	Unmodified	_RPPNYSGTIAL_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MSMS	OvCa9_classI_Rep3	3	594.8226928710938	2	594.822212	1187.62987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.605	1	84.428	83.928	84.928	-2.1768								0	0	0	0.0066024	1	5159	5159		93.598	31.49	1				50149	14937	41538	41567	54206	54206					0.043562019090586546
RPPNYSGTIAL	11	Unmodified	_RPPNYSGTIAL_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MSMS	OvCa9_classI_Rep3	3	594.8229370117188	2	594.822212	1187.62987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.655	1	84.478	83.978	84.978	-2.1768								0	0	0	0.0024293	1	5165	5165		98.582	10.886	1				50150	14937	41538	41567	54207	54207					0.043562019090586546
RPPNYSGTIAL	11	Unmodified	_RPPNYSGTIAL_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MSMS	OvCa9_classI_Rep3	3	594.8233032226562	2	594.822212	1187.62987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.705	1	84.529	84.029	85.029	-2.1768								0	0	0	0.14736	1	5171	5171		56.632	1.8559	1				50151	14937	41538	41567	54208	54208					0.043562019090586546
RPPNYSGTIAL	11	Unmodified	_RPPNYSGTIAL_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MSMS	OvCa9_classI_Rep3	3	594.8233642578125	2	594.822212	1187.62987	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.813	1	84.637	84.137	85.137	-2.1768								0	0	0	0.18608	1	5184	5184		47.228	3.1109	1				50152	14937	41538	41567	54209	54209					0.043562019090586546
RPPNYSGTIAL	11	Unmodified	_RPPNYSGTIAL_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-MSMS	OvCa9_classI_Rep4_	4	594.8232421875	2	594.822212	1187.62987	0.54249	0.00032269	-1.6919	-0.0010064	-1.1494	-0.00068372	594.821180381397	86.951	2.3021	84.324	83.86	86.162	-2.6269					107	45	4	0	0	0	0.051425	3	7375	7363;7375;7399		114.89	36.631	1	1537900			50153	14937	41538	41567	54210;54211;54212	54211					0.043562019090586546
RPPPGRRSH	9	Unmodified	_RPPPGRRSH_					0	0	0			REV__nc|ENSG00000161547|Q01130-2|SRSF2	REV__nc|ENSG00000161547|Q01130-2|SRSF2	MULTI-MSMS	OvCa9_classI_Rep2	2	530.2987670898438	2	530.299573	1058.58459	-0.044695	-2.3702E-05	-1.4979	-0.00079432	-1.5426	-0.00081802	530.2986629314781	30.396	1.3311	27.686	27.458	28.789	-2.7097					67	26	4	0	0	0	0.55011	1	843	843		37.812	0	1	398640	+		50154	20699	41539	41568	54213	54213					0.0576444095718216
RPPPIGAEV	9	Unmodified	_RPPPIGAEV_					0	0	0		ENSG00000143384|ENST00000369026|MCL1;nc|ENSG00000143384|Q07820-2|MCL1;MCL1-CTSS|2|fusion	ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	468.27044677734375	2	468.269084	934.523616	0.66351	0.0003107	-2.3599	-0.0011051	-1.6964	-0.00079438	468.2685558729289	68.381	2.543	64.891	64.333	66.876	-3.4902					125	51	5	0	0	0	0.35444	4	5072	5051;5072;5085;5099		56.721	8.8512	1	649160			50155	5047	41540	41569	54214;54215;54216;54217	54215					0.05373491134378128
RPPPIGAEV	9	Unmodified	_RPPPIGAEV_					0	0	0		ENSG00000143384|ENST00000369026|MCL1;nc|ENSG00000143384|Q07820-2|MCL1;MCL1-CTSS|2|fusion	ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	468.269084	934.523616	-0.9947	-0.00046579	1.2245	0.0005734	0.22982	0.00010762	468.269432432212	67.675	2.3756	65.014	64.199	66.574	-2.661	0.06154	0.00083723	NaN	56.721	95	47	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166570			50156	5047	41540	41569							0.05373491134378128
RPPPQSLLH	9	Unmodified	_RPPPQSLLH_					0	0	0		chr11:64288214-64289156|136|18.08|0.02|9.97|+|1|GPR137,None|1	chr11:64288214-64289156|136|18.08|0.02|9.97|+|1|GPR137,None|1	chr11:64288214-64289156|136|18.08|0.02|9.97|+|1|GPR137,None|1	MULTI-MSMS	OvCa9_classI_Rep2	2	522.8005981445312	2	522.801083	1043.58761	-0.60564	-0.00031663	0.2391	0.000125	-0.36654	-0.00019163	522.8010421976496	33.203	1.3901	30.493	30.272	31.662	-2.7097					70	27	4	0	0	0	0.18193	2	1186	1180;1186		79.451	5.196	1	560900			50157	296	41541	41570	54218;54219	54219					0.0675627129132863
RPPPRPQT	8	Unmodified	_RPPPRPQT_					0	0	0			REV__ENST00000465695.1_1_10:75532322-75533104:+|nuORF	REV__ENST00000465695.1_1_10:75532322-75533104:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.7725830078125	2	474.772326	947.530098	1.4458	0.0006864	-1.8304	-0.00086903	-0.38467	-0.00018263	474.7714054184023	37.259	2.3363	34.367	33.695	36.031	-2.8925					116	46	4	0	0	0	0.68714	1	1369	1369		45.952	1.8352	1	1197600	+		50158	26173	41542	41571	54220	54220					0.05423429085760745
RPPPSLIEV	9	Unmodified	_RPPPSLIEV_					0	0	0			REV__ENST00000468178.5_1_2:238454193-238454244:+|nuORF	REV__ENST00000468178.5_1_2:238454193-238454244:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	504.2965087890625	2	504.297842	1006.58113	-0.51106	-0.00025773	-2.5251	-0.0012734	-3.0362	-0.0015312	504.2965168618611	31.671	1.532	28.961	28.69	30.222	-2.7097					81	30	4	0	0	0	0.63422	1	1025	1025		27.882	0	1	812760	+		50159	26217	41543	41572	54221	54221					0.07810333339955378
RPPPSPSGTL	10	Unmodified	_RPPPSPSGTL_					0	0	0		nc|ENSG00000132294|Q14156-3|EFR3A;nc|ENSG00000132294|Q14156-2|EFR3A;ENSG00000132294|ENST00000254624|EFR3A	nc|ENSG00000132294|Q14156-3|EFR3A	nc|ENSG00000132294|Q14156-3|EFR3A	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.77838134765625	2	504.777274	1007.53999	-0.42508	-0.00021457	-0.17598	-8.883E-05	-0.60105	-0.0003034	504.77710651401486	57.709	2.0735	54.364	53.628	55.702	-3.3449					118	40	4	0	0	0	0.26424	2	3759	3759;3782		85.161	0	1	342660			50160	4122	41544	41573	54222;54223	54222					0.0365257230048428
RPPPSPSGTL	10	Unmodified	_RPPPSPSGTL_					0	0	0		nc|ENSG00000132294|Q14156-3|EFR3A;nc|ENSG00000132294|Q14156-2|EFR3A;ENSG00000132294|ENST00000254624|EFR3A	nc|ENSG00000132294|Q14156-3|EFR3A	nc|ENSG00000132294|Q14156-3|EFR3A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	504.777274	1007.53999	-1.1007	-0.00055561	0.15324	7.7352E-05	-0.94746	-0.00047825	504.777298906711	57.245	1.3902	54.453	53.782	55.173	-2.792	0.044407	0.00027575	NaN	85.161	86	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68906			50161	4122	41544	41573							0.0365257230048428
RPPPTGKNGVH	11	Unmodified	_RPPPTGKNGVH_					0	0	0			REV__ENSG00000184083|ENST00000375180|FAM120C	REV__ENSG00000184083|ENST00000375180|FAM120C	MULTI-MSMS	OvCa9_classI_Rep2	2	580.3203125	2	580.320171	1158.62579	-1.1219	-0.00065106	0.76663	0.00044489	-0.35527	-0.00020617	580.3205275503568	48.28	1.7369	45.57	45.083	46.82	-2.7097					101	34	4	0	0	0	0.56391	1	3043	3043		47.96	5.0953	1	548460	+		50162	22403	41545	41574	54224	54224					0.052821572060111066
RPPPVGHSF	9	Unmodified	_RPPPVGHSF_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.C4432Lfs*27|1|0.15|ENSG00000055609|chr7:152148633-152148634|-/AGCCTGTAATCCCAGCTACTCGGGAGGCTGAG|frameshift_variant;KMT2C|p.S2184Lfs*11|1|0.1|ENSG00000055609|chr7:152181310-152181310|A/-|frameshift_variant	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.8069152832031	2	497.266876	992.519199	-1.5895	-0.00079042	1.4225	0.00070734	-0.16708	-8.3086E-05	497.26734852350086	50.294	1.3389	47.152	46.715	48.054	-3.1416					51	25	3	0	0	0	0.027448	1	2903	2903		44.117	5.3107	1	109390			50163	1222	41546	41575	54225	54225					0.022640267114752533
RPPPVGHSF	9	Unmodified	_RPPPVGHSF_					0	0	0		ENSG00000055609|ENST00000262189|KMT2C;nc|ENSG00000055609|Q8NEZ4-2|KMT2C;nc|ENSG00000055609|Q8NEZ4-3|KMT2C;KMT2C|p.C4432Lfs*27|1|0.15|ENSG00000055609|chr7:152148633-152148634|-/AGCCTGTAATCCCAGCTACTCGGGAGGCTGAG|frameshift_variant;KMT2C|p.S2184Lfs*11|1|0.1|ENSG00000055609|chr7:152181310-152181310|A/-|frameshift_variant	ENSG00000055609|ENST00000262189|KMT2C	ENSG00000055609|ENST00000262189|KMT2C	MULTI-MATCH	OvCa9_classI_Rep2	2		2	497.266876	992.519199	-1.0737	-0.00053389	0.69713	0.00034666	-0.37652	-0.00018723	497.26696149168697	49.993	1.239	47.199	46.785	48.024	-2.794	0.023397	-0.00042188	NaN	44.117	36	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23306			50164	1222	41546	41575							0.022640267114752533
RPPQCILFH	9	Unmodified	_RPPQCILFH_					0	0	0		ENST00000555216.5_1_14:51009219-51027779:-|nuORF	ENST00000555216.5_1_14:51009219-51027779:-|nuORF	ENST00000555216.5_1_14:51009219-51027779:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	555.7981567382812	2	555.797486	1109.58042	0.67356	0.00037436	1.0328	0.00057403	1.7064	0.00094839	555.7980692819577	66.887	2.2263	64.226	63.651	65.878	-2.661					106	44	4	0	0	0	0.44294	1	5165	5165		47.916	1.9434	1	1196600			50165	13643	41547	41576	54226	54226					0.030012154192490925
RPPRASAIS	9	Unmodified	_RPPRASAIS_					0	0	0		ENSG00000134256|ENST00000682167|CD101	ENSG00000134256|ENST00000682167|CD101	ENSG00000134256|ENST00000682167|CD101	MULTI-MSMS	OvCa99_classI_Rep5	1	477.7767639160156	2	477.777608	953.540663	0.1625	7.7638E-05	-0.45153	-0.00021573	-0.28903	-0.00013809	477.7773148546113	45.048	0.7904	45.048	44.706	45.496	0					48	17	4	0	0	0	0.50149	1	3083	3083		42.396	3.1433	1	3689000			50166	4273	41548	41577	54227	54227					0.0620341174017085
RPPRIESS	8	Unmodified	_RPPRIESS_					0	0	0		ENST00000433078.5_1_7:86828354-86848761:-|nuORF	ENST00000433078.5_1_7:86828354-86848761:-|nuORF	ENST00000433078.5_1_7:86828354-86848761:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	471.2607116699219	2	471.261791	940.509028	0.74224	0.00034979	-0.77963	-0.00036741	-0.037385	-1.7618E-05	471.26127618416797	42.586	1.0873	39.876	39.621	40.708	-2.7097					50	21	3	0	0	0	0.64026	1	2329	2329		55.504	0	1	212530			50167	11824	41549	41578	54228	54228					0.036394189862335224
RPPRKGTT	8	Unmodified	_RPPRKGTT_					0	0	0		nc|ENSG00000248905|Q68DA7-5|FMN1;nc|ENSG00000248905|Q68DA7-3|FMN1	nc|ENSG00000248905|Q68DA7-5|FMN1	nc|ENSG00000248905|Q68DA7-5|FMN1	MULTI-MSMS	OvCa9_classI_Rep3	3	456.7726745605469	2	456.772326	911.530098	-2.6183	-0.001196	2.5573	0.0011681	-0.061068	-2.7894E-05	456.77340273142477	142.71	1.7302	141.7	141.28	143.01	-1.0106					71	34	3	0	0	0	0.75915	1	11887	11887		20.482	2.1574	1	453300			50168	15348	41550	41579	54229	54229					0.07079429085752054
RPPRQDRPE	9	Unmodified	_RPPRQDRPE_					0	0	0			REV__nc|ENSG00000103021|Q9H0I3-2|CFAP263	REV__nc|ENSG00000103021|Q9H0I3-2|CFAP263	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8070068359375	2	575.807428	1149.6003	-1.2006	-0.00069133	-2.7149	-0.0015632	-3.9155	-0.0022546	575.8058252746728	69.808	2.0898	66.327	65.96	68.05	-3.4812					121	42	4	0	0	0	0.27001	1	5257	5257		66.429	4.3219	1	3004400	+		50169	17588	41551	41580	54230	54230					0.03148682683581683
RPPRRCDSNP	10	Unmodified	_RPPRRCDSNP_					0	0	0		THBS4|p.C313Afs*27|1|0.33|ENSG00000113296|chr5:80059854-80059863|CTGCCCCGAG/-|frameshift_variant;ENSG00000113296|ENST00000350881|THBS4	THBS4|p.C313Afs*27|1|0.33|ENSG00000113296|chr5:80059854-80059863|CTGCCCCGAG/-|frameshift_variant	THBS4|p.C313Afs*27|1|0.33|ENSG00000113296|chr5:80059854-80059863|CTGCCCCGAG/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	600.223876953125	2	599.298913	1196.58327	0.76932	0.00046105	3.0084	0.0018029	3.7777	0.002264	599.8026661165148	160.35	0.70291	160.35	160.06	160.76	0					18	13	2	0	0	0	0.027145	1	18765	18765		18.262	0.79408	1	50683			50170	2961	41552	41581	54231	54231					-0.0071556119389697415
RPPRRGPSH	9	Unmodified	_RPPRRGPSH_					0	0	0			REV__nc|ENSG00000146232|O00221|NFKBIE	REV__nc|ENSG00000146232|O00221|NFKBIE	MULTI-MSMS	OvCa9_classI_Rep2	2	530.2989501953125	2	530.299573	1058.58459	-0.044695	-2.3702E-05	-1.4979	-0.00079432	-1.5426	-0.00081802	530.2986629314781	30.396	1.3311	27.686	27.458	28.789	-2.7097					67	26	4	0	0	0	0.46356	1	816	816		45.972	1.5951	1	398640	+		50171	28916	41553	41582	54232	54232					0.0576444095718216
RPPSEHNTEF	10	Unmodified	_RPPSEHNTEF_					0	0	0		ENSG00000142347|ENST00000644032|MYO1F	ENSG00000142347|ENST00000644032|MYO1F	ENSG00000142347|ENST00000644032|MYO1F	MULTI-MSMS	OvCa9_classI_Rep4_	4	607.2835693359375	2	607.283451	1212.55235	-0.52897	-0.00032123	0.81023	0.00049204	0.28126	0.0001708	607.283766315934	43.423	1.5891	40.415	39.906	41.495	-3.0074					93	30	4	0	0	0	0.32141	2	2091	2069;2091		78.264	6.3863	1	274940			50172	4968	41554	41583	54233;54234	54234					-0.045424360271454134
RPPSEHNTEF	10	Unmodified	_RPPSEHNTEF_					0	0	0		ENSG00000142347|ENST00000644032|MYO1F	ENSG00000142347|ENST00000644032|MYO1F	ENSG00000142347|ENST00000644032|MYO1F	MULTI-MATCH	OvCa9_classI_Rep2	2		2	607.283451	1212.55235	0.18741	0.00011381	-0.063818	-3.8755E-05	0.12359	7.5054E-05	607.2832909293617	43.135	1.4362	40.426	39.966	41.402	-2.7097	0.0051373	-0.00056844	NaN	78.264	58	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58422			50173	4968	41554	41583							-0.045424360271454134
RPPSGREEFV	10	Unmodified	_RPPSGREEFV_					0	0	0		ENST00000418430.1_1_2:237994285-237994429:-|nuORF	ENST00000418430.1_1_2:237994285-237994429:-|nuORF	ENST00000418430.1_1_2:237994285-237994429:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	586.8319091796875	2	587.304187	1172.59382	-0.4358	-0.00025595	2.241	0.0013162	1.8052	0.0010602	587.8070228719113	58.975	0.40495	55.583	55.35	55.755	-3.392					10	7	2	0	0	0	0.026881	1	3885	3885		45.022	17.14	1	31120			50174	11640	41555	41584	54235	54235					0.014427447321850195
RPPTPLSAL	9	Unmodified	_RPPTPLSAL_					0	0	0		ENST00000405135.5_1_22:50969739-50970123:-|nuORF	ENST00000405135.5_1_22:50969739-50970123:-|nuORF	ENST00000405135.5_1_22:50969739-50970123:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.3002014160156	2	476.284734	950.554916	0.12556	5.9802E-05	0.011156	5.3135E-06	0.13672	6.5116E-05	476.2845916990807	64.761	1.8402	62.036	61.598	63.439	-2.7246					77	35	3	0	0	0	0.027461	1	5049	5049		25.574	1.0549	1	214850			50175	11459	41556	41585	54236	54236					0.07766064168458797
RPPVFDDL	8	Unmodified	_RPPVFDDL_					0	0	0			REV__ENST00000531958.5_1_11:67184814-67192505:+|nuORF	REV__ENST00000531958.5_1_11:67184814-67192505:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.7639465332031	2	479.753267	957.491981	-0.97182	-0.00046623	-3.7534	-0.0018007	-4.7252	-0.0022669	479.75137159665456	45.25	1.2988	42.212	41.714	43.013	-3.0385					34	24	2	0	0	0	0.028476	1	2373	2373		37.159	0	1	36337	+		50176	21706	41557	41586	54237	54237					0.01153498380426754
RPPVLGPIGVS	11	Unmodified	_RPPVLGPIGVS_					0	0	0			REV__ENST00000520755.5_1_8:38033904-38033979:-|nuORF	REV__ENST00000520755.5_1_8:38033904-38033979:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	546.3316040039062	2	546.332216	1090.64988	-2.6411	-0.0014429	-0.058936	-3.2199E-05	-2.7001	-0.0014751	546.3320576477423	36.639	1.8723	33.93	33.647	35.519	-2.7097					83	37	3	0	0	0	0.69455	1	1620	1620		31.53	4.7337	1	180730	+		50177	27059	41558	41587	54238	54238					0.10817997639651367
RPPVTRSVDTV	11	Unmodified	_RPPVTRSVDTV_					0	0	0		INPP4A|p.A753Pfs*78|1|0.04|ENSG00000040933|chr2:98565729-98565729|G/-|frameshift_variant;nc|ENSG00000040933|Q96PE3-2|INPP4A;nc|ENSG00000040933|Q96PE3-4|INPP4A;ENSG00000040933|ENST00000409851|INPP4A;nc|ENSG00000040933|Q96PE3|INPP4A	INPP4A|p.A753Pfs*78|1|0.04|ENSG00000040933|chr2:98565729-98565729|G/-|frameshift_variant	INPP4A|p.A753Pfs*78|1|0.04|ENSG00000040933|chr2:98565729-98565729|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	613.847412109375	2	613.846219	1225.67788	0.44639	0.00027401	-1.2428	-0.00076291	-0.79645	-0.0004889	613.8454693997087	61.199	1.9887	57.769	57.395	59.384	-3.43					134	40	6	0	0	0	0.5804	2	4189	4189;4201		46.457	5.6786	1	3122600			50178	1116	41559	41588	54239;54240	54239					0.07407275829086757
RPPWRRWRPWF	11	Unmodified	_RPPWRRWRPWF_					0	0	0		ENST00000532024.1_1_11:70118214-70118385:+|nuORF	ENST00000532024.1_1_11:70118214-70118385:+|nuORF	ENST00000532024.1_1_11:70118214-70118385:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	547.633544921875	3	547.300494	1638.87965	-0.017018	-9.314E-06	-3.7681	-0.0020623	-3.7852	-0.0020716	547.6324256659844	21.246	0.32842	21.246	21.061	21.389	0					13	9	2	0	0	0	0.72582	1	107	107		0.37141	0	1	13990			50179	13319	41560	41589	54241	54241					0.08576849095948091
RPQAILMKLWK	11	Unmodified	_RPQAILMKLWK_					0	0	0			REV__ENST00000455833.6_2_1:19230994-19231414:-|nuORF	REV__ENST00000455833.6_2_1:19230994-19231414:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	461.9478759765625	3	461.947959	1382.82205	-0.96937	-0.0004478	0.4777	0.00022067	-0.49167	-0.00022713	461.9480904471539	27.816	0.44957	27.816	27.591	28.041	0					14	8	2	0	0	0	0.69735	1	854	854		30.569	12.038	1	168740	+		50180	26020	41561	41590	54242	54242					0.14594826055508747
RPQAPATVGL	10	Unmodified	_RPQAPATVGL_					0	0	0		ENSG00000103363|ENST00000409906|ELOB;nc|ENSG00000103363|Q15370-2|ELOB	ENSG00000103363|ENST00000409906|ELOB	ENSG00000103363|ENST00000409906|ELOB	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.29376220703125	2	505.293091	1008.57163	-1.4081	-0.00071149	0.60565	0.00030603	-0.80242	-0.00040546	505.29334758597355	71.793	1.2168	68.337	68.024	69.241	-3.4563					74	24	5	0	0	0	0.32926	1	5483	5483		77.318	22.541	1	733880			50181	2312	41562	41591	54243	54243					0.06768565054414921
RPQAPATVGL	10	Unmodified	_RPQAPATVGL_					0	0	0		ENSG00000103363|ENST00000409906|ELOB;nc|ENSG00000103363|Q15370-2|ELOB	ENSG00000103363|ENST00000409906|ELOB	ENSG00000103363|ENST00000409906|ELOB	MULTI-MATCH	OvCa99_classI_Rep5	1		2	505.293091	1008.57163	-0.60959	-0.00030802	0.10285	5.1968E-05	-0.50675	-0.00025605	505.2929352736964	67.943	0.38945	67.943	67.762	68.152	0	-0.2357	0.00015656	NaN	77.318	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	673450			50182	2312	41562	41591							0.06768565054414921
RPQAPATVGL	10	Unmodified	_RPQAPATVGL_					0	0	0		ENSG00000103363|ENST00000409906|ELOB;nc|ENSG00000103363|Q15370-2|ELOB	ENSG00000103363|ENST00000409906|ELOB	ENSG00000103363|ENST00000409906|ELOB	MULTI-MATCH	OvCa9_classI_Rep2	2		2	505.293091	1008.57163	-0.028347	-1.4324E-05	-0.61013	-0.0003083	-0.63848	-0.00032262	505.29273531172106	70.827	1.3943	68.257	67.663	69.058	-2.5707	0.077927	-0.00056397	NaN	77.318	75	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173800			50183	2312	41562	41591							0.06768565054414921
RPQARAGLSP	10	Unmodified	_RPQARAGLSP_					0	0	0		ENST00000592103.5_1_19:38308222-38310893:+|nuORF;ENST00000589653.5_2_19:38308186-38310208:+|nuORF	ENST00000592103.5_1_19:38308222-38310893:+|nuORF	ENST00000592103.5_1_19:38308222-38310893:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.8314819335938	2	526.801614	1051.58868	-0.11296	-5.9506E-05	3.4998	0.0018437	3.3868	0.0017842	527.304593166131	70.487	0.51174	67.767	67.549	68.06	-2.7196					10	9	2	0	0	0	0.02663	1	3200	3200		42.864	0	1	8212.2			50184	14091	41563	41592	54244	54244					0.06494485660232385
RPQASALEL	9	Unmodified	_RPQASALEL_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1	ENSG00000072310|ENST00000261646|SREBF1	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	OvCa9_classI_Rep2	2	492.7768249511719	2	492.777274	983.539994	-0.024003	-1.1828E-05	-0.011704	-5.7673E-06	-0.035707	-1.7595E-05	492.7770102263904	75.315	1.7621	73.461	72.704	74.466	-1.854					86	33	4	0	0	0	0.26076	1	6199	6199		67.494	22.963	1	386480			50185	1470	41564	41593	54245	54245					0.04756572300470907
RPQASALEL	9	Unmodified	_RPQASALEL_					0	0	0		ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;ENST00000395756.5_1_17:17715938-17721122:-|nuORF;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1	ENSG00000072310|ENST00000261646|SREBF1	ENSG00000072310|ENST00000261646|SREBF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.77777099609375	2	492.777274	983.539994	0.050489	2.488E-05	-0.088694	-4.3706E-05	-0.038205	-1.8826E-05	492.7770261100685	76.331	1.8631	73.392	72.985	74.848	-2.9389					78	38	3	0	0	0	0.22621	1	6047	6047		71.877	18.526	1	1161800			50186	1470	41564	41593	54246	54246					0.04756572300470907
RPQASHQLL	9	Unmodified	_RPQASHQLL_					0	0	0		ENST00000494399.5_1_1:45478966-45479784:+|nuORF;ENSG00000126088|ENST00000246337|UROD	ENST00000494399.5_1_1:45478966-45479784:+|nuORF	ENST00000494399.5_1_1:45478966-45479784:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.2967529296875	2	525.296165	1048.57778	-1.074	-0.00056415	-1.0058	-0.00052833	-2.0797	-0.0010925	525.296559981774	48.331	1.5506	45.223	44.938	46.489	-3.1077					85	29	4	0	0	0	0.49652	1	2649	2649		42.864	1.4377	1	1035600			50187	3765	41565	41594	54247	54247					0.05543083285942885
RPQDGVAVL	9	Unmodified	_RPQDGVAVL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	OvCa9_classI_Rep2	2	477.771728515625	2	477.771991	953.529429	-0.12631	-6.0347E-05	-0.16534	-7.8993E-05	-0.29165	-0.00013934	477.7718338783036	72.751	2.3552	70.351	69.697	72.052	-2.3999					96	44	3	0	0	0	0.40818	1	5910	5910		51.193	6.8155	1	659350			50188	8756	41566	41595	54248	54248					0.05080589646047429
RPQDGVAVL	9	Unmodified	_RPQDGVAVL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.77301025390625	2	477.771991	953.529429	-0.44147	-0.00021092	-0.51589	-0.00024648	-0.95736	-0.0004574	477.77173142761416	73.753	1.9165	70.357	70.027	71.944	-3.3961					89	39	3	0	0	0	0.28934	2	5743	5722;5743		64.207	6.7668	1	2539800			50189	8756	41566	41595	54249;54250	54250					0.05080589646047429
RPQDKFLVL	9	Unmodified	_RPQDKFLVL_					0	0	0		ENSG00000172840|ENST00000311765|PDP2;ENSG00000164951|ENST00000297598|PDP1;nc|ENSG00000164951|Q9P0J1-2|PDP1	ENSG00000172840|ENST00000311765|PDP2	ENSG00000172840|ENST00000311765|PDP2	MULTI-MSMS	OvCa9_classI_Rep2	2	558.3306274414062	2	558.332216	1114.64988	2.2777	0.0012717	-2.1106	-0.0011784	0.16703	9.3259E-05	558.3305307005123	89.131	1.3361	87.764	87.478	88.814	-1.3676					77	26	4	0	0	0	0.3249	2	7830	7830;7836		60.118	22.307	1	496490			50190	7323	41567	41596	54251;54252	54251					0.0971399763966474
RPQGGRLPG	9	Unmodified	_RPQGGRLPG_					0	0	0			REV__ENST00000477668.5_1_3:127323572-127337961:+|nuORF	REV__ENST00000477668.5_1_3:127323572-127337961:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	469.26806640625	2	469.26995	936.525347	-0.51775	-0.00024296	0.32381	0.00015195	-0.19394	-9.101E-05	469.27001652682253	25.421	0.35089	25.421	25.292	25.643	0					14	6	3	0	0	0	0.6653	1	570	570		24.203	2.2429	1	68323	+		50191	26392	41568	41597	54253	54253					0.05454544942995199
RPQGKVVAL	9	Unmodified	_RPQGKVVAL_					0	0	0		ENSG00000198146|ENST00000356321|ZNF770	ENSG00000198146|ENST00000356321|ZNF770	ENSG00000198146|ENST00000356321|ZNF770	MULTI-MSMS	OvCa9_classI_Rep2	2	484.3055419921875	2	484.306001	966.597449	-1.3004	-0.00062977	1.0007	0.00048463	-0.29969	-0.00014514	484.30630349889117	51.045	1.3359	48.251	47.729	49.065	-2.794					63	26	3	0	0	0	0.48324	3	3337	3324;3330;3337		44.117	15.764	1	229630			50192	8790	41569	41598	54254;54255;54256	54256					0.11281459296708363
RPQGKVVAL	9	Unmodified	_RPQGKVVAL_					0	0	0		ENSG00000198146|ENST00000356321|ZNF770	ENSG00000198146|ENST00000356321|ZNF770	ENSG00000198146|ENST00000356321|ZNF770	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.3051452636719	2	484.306001	966.597449	-0.49998	-0.00024214	-0.25446	-0.00012323	-0.75443	-0.00036538	484.3057338859189	51.419	1.3583	48.245	47.872	49.23	-3.1734					73	26	4	0	0	0	0.55588	2	3021	3010;3021		37.159	2.1027	1	683560			50193	8790	41569	41598	54257;54258	54258					0.11281459296708363
RPQGLRRLR	9	Unmodified	_RPQGLRRLR_					0	0	0			REV__ENST00000487852.1_1_13:33590814-33628082:+|nuORF	REV__ENST00000487852.1_1_13:33590814-33628082:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.8052978515625	2	576.365247	1150.71594	-0.0060051	-3.4612E-06	-1.56	-0.00089912	-1.566	-0.00090258	576.3643236823597	68.694	1.0006	65.879	65.611	66.612	-2.8144					31	19	3	0	0	0	0.027462	1	3048	3048		37.159	9.2769	1	25316	+		50194	26609	41570	41599	54259	54259					0.1466125132506022
RPQGLRRLR	9	Unmodified	_RPQGLRRLR_					0	0	0			REV__ENST00000487852.1_1_13:33590814-33628082:+|nuORF	REV__ENST00000487852.1_1_13:33590814-33628082:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	576.365247	1150.71594	-1.9337	-0.0011145	0.24924	0.00014366	-1.6844	-0.00097085	576.8673787192442	68.168	0.54164	65.507	65.286	65.828	-2.661	-0.18604	0.0018306	NaN	37.159	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17819	+		50195	26609	41570	41599							0.1466125132506022
RPQGTSPCP	9	Unmodified	_RPQGTSPCP_					0	0	0		nc|ENSG00000070759|Q96S53-3|TESK2;nc|ENSG00000070759|Q96S53-2|TESK2;ENSG00000070759|ENST00000372086|TESK2	nc|ENSG00000070759|Q96S53-3|TESK2	nc|ENSG00000070759|Q96S53-3|TESK2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.2564392089844	2	471.726726	941.4389	0.47238	0.00022283	-1.3046	-0.00061541	-0.83221	-0.00039258	471.7247164253713	52.162	0.25203	48.954	48.792	49.044	-3.208					6	4	2	0	0	0	0.027462	1	3088	3088		40.573	1.7665	1	6097.1			50196	1434	41571	41600	54260	54260					-0.03416202673884072
RPQLEIPVK	9	Unmodified	_RPQLEIPVK_					0	0	0			REV__ENSG00000007545|ENST00000397412|CRAMP1;REV__ENST00000454337.1_1_16:1697048-1706838:+|nuORF	REV__ENST00000454337.1_1_16:1697048-1706838:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3297729492188	2	540.332216	1078.64988	-1.5762	-0.00085169	-2.2598	-0.001221	-3.836	-0.0020727	540.3309156564876	138.68	4.2384	138.45	137.13	141.37	-0.22697					227	86	3	0	0	0	0.66262	1	13842	13842		24.519	2.5593	1	66382	+		50197	16438;26000	41572	41601	54261	54261					0.11369997639667417
RPQLHKNTVL	10	Unmodified	_RPQLHKNTVL_					0	0	0		ENSG00000121060|ENST00000316881|TRIM25	ENSG00000121060|ENST00000316881|TRIM25	ENSG00000121060|ENST00000316881|TRIM25	MULTI-MSMS	OvCa9_classI_Rep4_	4	402.5761413574219	3	402.57529	1204.70404	2.0939	0.00084294	-2.4946	-0.0010043	-0.40069	-0.00016131	402.57429423025644	47.74	1.7344	44.632	44.237	45.971	-3.1077					73	31	4	0	0	0	0.58667	1	2589	2589		43.651	2.2242	1	472250			50198	3468	41573	41602	54262	54262					0.10987589791216124
RPQLHKNTVL	10	Unmodified	_RPQLHKNTVL_					0	0	0		ENSG00000121060|ENST00000316881|TRIM25	ENSG00000121060|ENST00000316881|TRIM25	ENSG00000121060|ENST00000316881|TRIM25	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		3	402.57529	1204.70404	0.99404	0.00040018	-0.64778	-0.00026078	0.34626	0.00013939	402.5751079773302	47.265	1.7351	44.555	43.894	45.629	-2.7097	-0.038281	0.0016138	NaN	43.651	71	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211230			50199	3468	41573	41602							0.10987589791216124
RPQLKGVVL	9	Unmodified	_RPQLKGVVL_					0	0	0		ENSG00000128626|ENST00000308018|MRPS12	ENSG00000128626|ENST00000308018|MRPS12	ENSG00000128626|ENST00000308018|MRPS12	MULTI-MSMS	OvCa9_classI_Rep3	3	505.3290100097656	2	505.329476	1008.6444	-0.23762	-0.00012008	-0.43101	-0.0002178	-0.66864	-0.00033788	505.3291917043536	71.901	1.8283	69.298	68.932	70.76	-2.6023					107	36	4	0	0	0	0.21395	1	3385	3385		73.975	10.996	1	992780			50200	3896	41574	41603	54263	54263					0.14042318847862134
RPQLKGVVL	9	Unmodified	_RPQLKGVVL_					0	0	0		ENSG00000128626|ENST00000308018|MRPS12	ENSG00000128626|ENST00000308018|MRPS12	ENSG00000128626|ENST00000308018|MRPS12	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	505.329476	1008.6444	-1.6061	-0.00081162	0.97687	0.00049364	-0.62924	-0.00031798	505.32987525313087	72.929	1.353	69.533	69.204	70.557	-3.3961	0.2065	0.0010242	NaN	73.975	74	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	627560			50201	3896	41574	41603							0.14042318847862134
RPQLLKNAL	9	Unmodified	_RPQLLKNAL_					0	0	0		nc|ENSG00000127483|Q5SSJ5-3|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;ENSG00000127483|ENST00000438032|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	MULTI-MSMS	OvCa9_classI_Rep3	3	526.8323364257812	2	526.832383	1051.65021	-0.02688	-1.4162E-05	2.9838	0.001572	2.9569	0.0015578	526.8321214850487	69.898	2.0087	67.178	66.856	68.864	-2.7196					118	39	6	0	0	0	0.29717	6	3156	3141;3144;3156;3162;3169;3182		63.306	22.528	1	1842000			50202	3834	41575	41604	54264;54265;54266;54267;54268;54269	54266					0.12645417359499334
RPQLLPVGR	9	Unmodified	_RPQLLPVGR_					0	0	0		ENST00000539063.5_1_12:9070367-9075253:+|nuORF	ENST00000539063.5_1_12:9070367-9075253:+|nuORF	ENST00000539063.5_1_12:9070367-9075253:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	518.3253173828125	2	518.324725	1034.6349	-0.20131	-0.00010434	-0.59303	-0.00030738	-0.79433	-0.00041172	518.3244380054447	69.411	2.6973	66.791	66.416	69.113	-2.6203					144	52	4	0	0	0	0.46377	2	5551	5500;5551		45.952	0	1	2532100			50203	13430	41576	41605	54270;54271	54271					0.11896550562323682
RPQLRLPL	8	Unmodified	_RPQLRLPL_					0	0	0			REV__ENST00000497483.1_1_22:50689302-50689819:-|nuORF	REV__ENST00000497483.1_1_22:50689302-50689819:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.2980041503906	2	496.821818	991.629084	0.59737	0.00029679	-1.0934	-0.00054324	-0.49606	-0.00024645	496.82108994761205	68.25	1.2749	64.76	64.478	65.753	-3.4902					65	25	4	0	0	0	0.028476	1	5093	5093		31.955	0	1	335060	+		50204	26779	41577	41606	54272	54272					0.13293452050652377
RPQLRLPL	8	Unmodified	_RPQLRLPL_					0	0	0			REV__ENST00000497483.1_1_22:50689302-50689819:-|nuORF	REV__ENST00000497483.1_1_22:50689302-50689819:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	496.821818	991.629084	-0.49898	-0.0002479	-0.034256	-1.7019E-05	-0.53324	-0.00026492	496.8216672194777	67.282	1.2835	64.621	64.298	65.581	-2.661	-0.06957	0.00055541	NaN	31.955	64	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	328340	+		50205	26779	41577	41606							0.13293452050652377
RPQLRSVLL	9	Unmodified	_RPQLRSVLL_					0	0	0		ENST00000591718.1_1_19:55966993-55972941:-|nuORF;ENSG00000063241|ENST00000425675|ISOC2;nc|ENSG00000063241|Q96AB3-2|ISOC2	ENST00000591718.1_1_19:55966993-55972941:-|nuORF	ENST00000591718.1_1_19:55966993-55972941:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	541.345703125	2	541.345658	1080.67676	-0.18719	-0.00010134	-1.1969	-0.00064794	-1.3841	-0.00074928	541.345222203672	81.441	1.5457	79.792	79.415	80.961	-1.6485					147	29	7	0	0	0	0.42676	2	6915	6915;6953		49.442	5.3247	1	3232100			50206	1287	41578	41607	54273;54274	54273					0.13965106250861936
RPQLRSVLL	9	Unmodified	_RPQLRSVLL_					0	0	0		ENST00000591718.1_1_19:55966993-55972941:-|nuORF;ENSG00000063241|ENST00000425675|ISOC2;nc|ENSG00000063241|Q96AB3-2|ISOC2	ENST00000591718.1_1_19:55966993-55972941:-|nuORF	ENST00000591718.1_1_19:55966993-55972941:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	541.3460083007812	2	541.345658	1080.67676	-0.52558	-0.00028452	-1.1101	-0.00060096	-1.6357	-0.00088548	541.3451745441885	82.59	3.0818	80.294	79.634	82.716	-2.2963					214	63	7	0	0	0	0.35444	3	4662	4662;4709;4716		56.721	12.344	1	3973000			50207	1287	41578	41607	54275;54276;54277	54275					0.13965106250861936
RPQLRSVLL	9	Unmodified	_RPQLRSVLL_					0	0	0		ENST00000591718.1_1_19:55966993-55972941:-|nuORF;ENSG00000063241|ENST00000425675|ISOC2;nc|ENSG00000063241|Q96AB3-2|ISOC2	ENST00000591718.1_1_19:55966993-55972941:-|nuORF	ENST00000591718.1_1_19:55966993-55972941:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.3465576171875	2	541.345658	1080.67676	-0.94096	-0.00050939	-0.28271	-0.00015304	-1.2237	-0.00066243	541.3456613983815	82.909	2.3512	80.226	79.684	82.036	-2.683					196	48	7	0	0	0	0.3076	1	6877	6877		62.107	21.329	1	3004400			50208	1287	41578	41607	54278	54278					0.13965106250861936
RPQLTIINGE	10	Unmodified	_RPQLTIINGE_					0	0	0		tr|A0A553SNT1|A0A553SNT1_NIACITIGR00282familymetallophosphoesteraseOS=NialliacirculansOX=1397GN=CEQ21_25105PE=4SV=1	tr|A0A553SNT1|A0A553SNT1_NIACITIGR00282familymetallophosphoesteraseOS=NialliacirculansOX=1397GN=CEQ21_25105PE=4SV=1	tr|A0A553SNT1|A0A553SNT1_NIACITIGR00282familymetallophosphoesteraseOS=NialliacirculansOX=1397GN=CEQ21_25105PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	570.8216552734375	2	570.822212	1139.62987	-1.1076	-0.00063223	-0.082127	-4.688E-05	-1.1897	-0.00067911	570.8223947094398	83.611	2.5243	82.012	81.415	83.939	-1.5988					150	50	5	0	0	0	0.6104	1	7146	7146		40.778	1.972	1	939080			50209	33958	41579	41608	54279	54279					0.06564201909054646
RPQNTQPK	8	Unmodified	_RPQNTQPK_					0	0	0			REV__ENST00000463475.1_1_9:133813584-133814604:-|nuORF	REV__ENST00000463475.1_1_9:133813584-133814604:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.30224609375	2	484.76724	967.519927	-0.3912	-0.00018964	-0.93998	-0.00045567	-1.3312	-0.00064531	484.76703194940836	47.895	0.26083	47.895	47.812	48.073	0					7	5	2	0	0	0	0.028476	1	3469	3469		20.947	0	1	45587	+		50210	26131	41580	41609	54280	54280					0.034868213605250276
RPQPAGGK	8	Unmodified	_RPQPAGGK_					0	0	0			REV__ENST00000449079.7_1_20:2740250-2740700:+|nuORF	REV__ENST00000449079.7_1_20:2740250-2740700:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.89154052734375	2	405.732669	809.450785	1.3091	0.00053115	4.2082	0.0017074	5.5173	0.0022385	405.73428220172775	46.608	0.39616	46.608	46.456	46.852	0					12	8	2	0	0	0	0.028476	1	3284	3284		12.207	0	1	162980	+		50211	25942	41581	41610	54281	54281					0.038437821316165355
RPQPEGSL	8	Unmodified	_RPQPEGSL_					0	0	0			REV__ENSG00000121764|ENST00000403528|HCRTR1	REV__ENSG00000121764|ENST00000403528|HCRTR1	MULTI-MSMS	OvCa9_classI_Rep4_	4	442.2364196777344	2	442.235242	882.45593	-1.0791	-0.00047723	1.0634	0.00047025	-0.015772	-6.9749E-06	442.23567133771746	53.587	2.1485	50.379	49.844	51.992	-3.208					94	41	4	0	0	0	0.56113	1	3290	3290		71.378	0.082209	1	1837400	+		50212	18555	41582	41611	54282	54282					0.010000412035765294
RPQPGRENF	9	Unmodified	_RPQPGRENF_					0	0	0		ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159889062-159890299:-|nuORF	ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.783447265625	2	550.783422	1099.55229	-1.1192	-0.00061642	0.56586	0.00031166	-0.55332	-0.00030476	550.7836992233939	42.834	1.8018	39.827	39.591	41.393	-3.0074					85	34	4	0	0	0	0.14998	1	2018	2018		84.916	5.2029	1	1271600			50213	5969	41583	41612	54283	54283					0.006496087635014192
RPQPLWRTRS	10	Unmodified	_RPQPLWRTRS_					0	0	0			REV__ENST00000549412.5_2_12:49760692-49761130:+|nuORF	REV__ENST00000549412.5_2_12:49760692-49761130:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	432.9156494140625	3	432.914305	1295.72109	-1.1041	-0.00047799	3.1241	0.0013525	2.02	0.0008745	432.9158567399814	54.785	2.7829	51.971	51.473	54.256	-2.8139					169	55	5	0	0	0	0.6898	1	3765	3765		31.634	4.8846	1	2816800	+		50214	27457	41584	41613	54284	54284					0.08505510397026228
RPQPLWRTRS	10	Unmodified	_RPQPLWRTRS_					0	0	0			REV__ENST00000549412.5_2_12:49760692-49761130:+|nuORF	REV__ENST00000549412.5_2_12:49760692-49761130:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	432.9164123535156	3	432.914305	1295.72109	-0.11601	-5.0221E-05	1.9307	0.00083584	1.8147	0.00078562	432.9152849032118	55.33	2.9994	52.035	51.546	54.545	-3.2944					163	58	5	0	0	0	0.6898	2	3464	3464;3524		31.634	4.8846	1	3156400	+		50215	27457	41584	41613	54285;54286	54285					0.08505510397026228
RPQPPPLPLP	10	Unmodified	_RPQPPPLPLP_					0	0	0		NR4A1|p.A49Pfs*68|1|0.14|ENSG00000123358|chr12:52054473-52054473|G/-|frameshift_variant	NR4A1|p.A49Pfs*68|1|0.14|ENSG00000123358|chr12:52054473-52054473|G/-|frameshift_variant	NR4A1|p.A49Pfs*68|1|0.14|ENSG00000123358|chr12:52054473-52054473|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	556.3335571289062	2	556.334759	1110.65496	-0.19442	-0.00010816	-2.9909	-0.001664	-3.1854	-0.0017721	556.3328413966966	70.438	1.3608	66.957	66.639	67.999	-3.4812					77	27	5	0	0	0	0.43592	1	5321	5321		63.306	0	1	456150			50216	15438	41585	41614	54287	54287					0.10406301502280257
RPQPQTLQL	9	Unmodified	_RPQPQTLQL_					0	0	0		ENSG00000104671|ENST00000221114|DCTN6	ENSG00000104671|ENST00000221114|DCTN6	ENSG00000104671|ENST00000221114|DCTN6	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.812255859375	2	540.811648	1079.60874	-0.60067	-0.00032485	-0.68065	-0.0003681	-1.2813	-0.00069295	540.811295243357	75.802	0.86443	72.863	72.594	73.459	-2.9389					47	17	4	0	0	0	0.094616	1	5993	5993		98.629	34.422	1	281650			50217	2384	41586	41615	54288	54288					0.07212236600184951
RPQPQTLQL	9	Unmodified	_RPQPQTLQL_					0	0	0		ENSG00000104671|ENST00000221114|DCTN6	ENSG00000104671|ENST00000221114|DCTN6	ENSG00000104671|ENST00000221114|DCTN6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	540.811648	1079.60874	-1.1581	-0.00062634	0.31475	0.00017022	-0.84339	-0.00045612	540.8118073848539	74.756	1.3546	72.785	72.114	73.469	-1.9711	-0.038943	0.00055295	NaN	98.629	49	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79148			50218	2384	41586	41615							0.07212236600184951
RPQPVKSEL	9	Unmodified	_RPQPVKSEL_					0	0	0		ENSG00000140044|ENST00000651602|JDP2;nc|ENSG00000140044|Q8WYK2-2|JDP2	ENSG00000140044|ENST00000651602|JDP2	ENSG00000140044|ENST00000651602|JDP2	MULTI-MSMS	OvCa9_classI_Rep2	2	527.30615234375	2	527.306198	1052.59784	-0.57511	-0.00030326	0.4213	0.00022215	-0.15381	-8.1105E-05	527.3061602728084	45.891	1.1468	43.181	42.797	43.943	-2.7097					58	22	4	0	0	0	0.46356	1	2699	2699		45.972	3.5761	1	225920			50219	4819	41587	41616	54289	54289					0.07364834225904815
RPQPVKSEL	9	Unmodified	_RPQPVKSEL_					0	0	0		ENSG00000140044|ENST00000651602|JDP2;nc|ENSG00000140044|Q8WYK2-2|JDP2	ENSG00000140044|ENST00000651602|JDP2	ENSG00000140044|ENST00000651602|JDP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.3069458007812	2	527.306198	1052.59784	-1.4348	-0.00075656	1.1122	0.00058645	-0.32261	-0.00017011	527.3066377278022	46.073	1.9199	43	42.352	44.272	-3.0724					98	36	5	0	0	0	0.055627	3	2407	2384;2395;2407		115.49	22.299	1	1025000			50220	4819	41587	41616	54290;54291;54292	54292					0.07364834225904815
RPQPYQPPA	9	Unmodified	_RPQPYQPPA_					0	0	0		nc|ENSG00000196923|Q9NR12-4|PDLIM7	nc|ENSG00000196923|Q9NR12-4|PDLIM7	nc|ENSG00000196923|Q9NR12-4|PDLIM7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.3056640625	2	527.277441	1052.54033	-1.7738	-0.0009353	0.96672	0.00050973	-0.80712	-0.00042557	527.7802829607443	50.767	0.71169	47.594	47.412	48.123	-3.1734					15	13	2	0	0	0	0.027448	1	2930	2930		44.117	4.864	1	45089			50221	15246	41588	41617	54293	54293					0.016159920203108413
RPQQLSLA	8	Unmodified	_RPQQLSLA_					0	0	0		ENST00000513671.5_1_5:42566025-42629199:+|nuORF	ENST00000513671.5_1_5:42566025-42629199:+|nuORF	ENST00000513671.5_1_5:42566025-42629199:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	456.7676696777344	2	456.766709	911.518865	-1.0943	-0.00049982	1.1247	0.00051372	0.03042	1.3895E-05	456.76710390256716	37.466	1.7255	34.756	34.386	36.112	-2.7097					82	34	4	0	0	0	0.72896	1	1727	1727		37.159	0	1	799280			50222	13021	41589	41618	54294	54294					0.05956606991617264
RPQRFAYY	8	Unmodified	_RPQRFAYY_					0	0	0		ENSG00000139174|ENST00000345127|PRICKLE1	ENSG00000139174|ENST00000345127|PRICKLE1	ENSG00000139174|ENST00000345127|PRICKLE1	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.7828979492188	2	550.785433	1099.55631	-1.1192	-0.00061642	-3.086	-0.0016997	-4.2051	-0.0023161	550.7836992233939	42.834	1.8018	39.827	39.591	41.393	-3.0074					85	34	4	0	0	0	0.65582	2	2042	2030;2042		52.299	7.7681	1	1271600			50223	4751	41590	41619	54295;54296	54296					0.010516982572426059
RPQRIQPEILH	11	Unmodified	_RPQRIQPEILH_					0	0	0			REV__NEDD4L|p.R443Q|1|0.06|ENSG00000049759|chr18:58341748-58341748|G/A|missense_variant	REV__NEDD4L|p.R443Q|1|0.06|ENSG00000049759|chr18:58341748-58341748|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	462.9364318847656	3	462.936999	1385.78917	0.079191	3.666E-05	-0.90827	-0.00042047	-0.82908	-0.00038381	462.9367014144655	44.408	4.3763	41.698	41.303	45.679	-2.7097					263	87	6	0	0	0	0.70032	1	2625	2625		29.551	4.4248	1	4456400	+		50224	29247	41591	41620	54297	54297					0.1117033525702027
RPQRIQPEILH	11	Unmodified	_RPQRIQPEILH_					0	0	0			REV__NEDD4L|p.R443Q|1|0.06|ENSG00000049759|chr18:58341748-58341748|G/A|missense_variant	REV__NEDD4L|p.R443Q|1|0.06|ENSG00000049759|chr18:58341748-58341748|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.93841552734375	3	462.936999	1385.78917	-1.4875	-0.00068863	0.6489	0.0003004	-0.83863	-0.00038823	462.9373949501134	44.694	4.8335	41.655	41.207	46.04	-3.0385					274	93	6	0	0	0	0.70315	1	2305	2305		28.577	0.93281	1	4600900	+		50225	29247	41591	41620	54298	54298					0.1117033525702027
RPQRRARA	8	Unmodified	_RPQRRARA_					0	0	0			REV__ENST00000182527.3_1_6:52363513-52363666:-|nuORF	REV__ENST00000182527.3_1_6:52363513-52363666:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	505.80877685546875	2	505.807565	1009.60058	-0.53174	-0.00026896	2.618	0.0013242	2.0863	0.0010553	505.8088540702735	73.091	1.7346	70.604	70.183	71.917	-2.4873					60	34	2	0	0	0	0.74229	1	3561	3561		30.504	1.3541	1	714830	+		50226	23689	41592	41621	54299	54299					0.096161471940718
RPQRRFARPV	10	Unmodified	_RPQRRFARPV_					0	0	0			REV__ENSG00000142082|ENST00000382743|SIRT3	REV__ENSG00000142082|ENST00000382743|SIRT3	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8821411132812	2	641.883804	1281.75306	-4.0037	-0.0025699	1.6367	0.0010506	-2.367	-0.0015193	642.3862707583961	149.94	3.9275	149.71	147.52	151.45	-0.22696					225	78	5	0	0	0	0.7759	1	15124	15124		21.96	2.8564	1	222110	+		50227	19766	41593	41622	54300	54300					0.1234492287080684
RPQRRFARPV	10	Unmodified	_RPQRRFARPV_					0	0	0			REV__ENSG00000142082|ENST00000382743|SIRT3	REV__ENSG00000142082|ENST00000382743|SIRT3	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8810424804688	2	641.883804	1281.75306	-4.6434	-0.0029805	2.7442	0.0017614	-1.8992	-0.0012191	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.83261	1	15700	15700		14.865	0.72775	1	543390	+		50228	19766	41593	41622	54301	54301					0.1234492287080684
RPQRRGRKYQS	11	Unmodified	_RPQRRGRKYQS_					0	0	0			REV__ENST00000352536.7_1_6:117586889-117589562:+|nuORF	REV__ENST00000352536.7_1_6:117586889-117589562:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	477.94073486328125	3	477.939514	1430.79671	-0.40384	-0.00019301	1.7041	0.00081446	1.3003	0.00062144	477.94034511259724	45.725	1.1969	43.015	42.747	43.943	-2.7097					72	23	4	0	0	0	0.70587	1	2693	2693		27.644	2.5179	1	323790	+		50229	24726	41594	41623	54302	54302					0.09854487577331383
RPQRSKQFK	9	Unmodified	_RPQRSKQFK_					0	0	0			REV__ENST00000470209.5_1_X:153173185-153178999:-|nuORF	REV__ENST00000470209.5_1_X:153173185-153178999:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	588.3177490234375	2	587.843813	1173.67307	-1.0131	-0.00059554	0.39283	0.00023092	-0.62027	-0.00036462	587.843813149183	48.342	1.0438	45.632	44.885	45.929	-2.7097					32	20	3	0	0	0	0.027462	1	2921	2921		44.117	5.3107	1	31599	+		50230	17213	41595	41624	54303	54303					0.09318436476974057
RPQRSKQFK	9	Unmodified	_RPQRSKQFK_					0	0	0			REV__ENST00000470209.5_1_X:153173185-153178999:-|nuORF	REV__ENST00000470209.5_1_X:153173185-153178999:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	587.843813	1173.67307	-1.5914	-0.00093551	1.2428	0.00073055	-0.34866	-0.00020495	587.8445013886426	48.875	0.78267	45.767	45.451	46.233	-3.1077	0.067542	0.00048357	NaN	44.117	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33388	+		50231	17213	41595	41624							0.09318436476974057
RPQRSLLF	8	Unmodified	_RPQRSLLF_					0	0	0			REV__ENST00000588460.5_1_17:74733301-74733829:+|nuORF	REV__ENST00000588460.5_1_17:74733301-74733829:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	508.8022766113281	2	508.803626	1015.5927	-0.69441	-0.00035332	0.43441	0.00022103	-0.26	-0.00013229	508.8040274066388	74.555	1.1447	72.584	72.114	73.259	-1.9711					65	21	5	0	0	0	0.50674	1	6112	6112		76.847	0.072494	1	1109800	+		50232	27888	41596	41625	54304	54304					0.08552575153942144
RPQRSLLF	8	Unmodified	_RPQRSLLF_					0	0	0			REV__ENST00000588460.5_1_17:74733301-74733829:+|nuORF	REV__ENST00000588460.5_1_17:74733301-74733829:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.80462646484375	2	508.803626	1015.5927	-0.10874	-5.5328E-05	-0.78724	-0.00040055	-0.89598	-0.00045588	508.80322743519525	75.801	0.91613	72.862	72.449	73.365	-2.9389					46	18	5	0	0	0	0.66057	1	5972	5972		51.335	1.3109	1	1193900	+		50233	27888	41596	41625	54305	54305					0.08552575153942144
RPQSESLL	8	Unmodified	_RPQSESLL_					0	0	0			REV__nc|ENSG00000138835|P49796-7|RGS3	REV__nc|ENSG00000138835|P49796-7|RGS3	MULTI-MSMS	OvCa99_classI_Rep5	1	465.2577819824219	2	465.256174	928.497795	2.4459	0.001138	0.53582	0.0002493	2.9817	0.0013873	465.2563117311809	94.92	0.5139	94.92	94.69	95.204	0					26	11	3	0	0	0	0.71369	1	10362	10362		40.573	4.9543	1	1119600	+		50234	28887	41597	41626	54306	54306					0.03068596892092046
RPQSGANGL	9	Unmodified	_RPQSGANGL_					0	0	0		ENSG00000164096|ENST00000504110|C4orf3;nc|nan|Q8WVX3-2|C4orf3	ENSG00000164096|ENST00000504110|C4orf3	ENSG00000164096|ENST00000504110|C4orf3	MULTI-MSMS	OvCa9_classI_Rep2	2	450.2384033203125	2	450.238316	898.462078	1.4973	0.00067415	-1.6348	-0.00073604	-0.13747	-6.1893E-05	450.2374056842666	39.042	1.2362	36.332	35.816	37.052	-2.7097					58	24	3	0	0	0	0.094616	1	1871	1871		98.629	16.324	1	142370			50235	6408	41598	41627	54307	54307					0.008785594351024884
RPQSSRPVL	9	Unmodified	_RPQSSRPVL_					0	0	0		ENST00000483061.1_1_2:224765805-224810001:-|nuORF;ENSG00000085449|ENST00000233055|WDFY1	ENST00000483061.1_1_2:224765805-224810001:-|nuORF	ENST00000483061.1_1_2:224765805-224810001:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	520.303466796875	2	520.30399	1038.59343	0.87613	0.00045586	-1.227	-0.00063843	-0.35091	-0.00018258	520.3032319005173	43.248	1.2895	40.538	40.213	41.502	-2.7097					78	25	5	0	0	0	0.37182	2	2385	2377;2385		54.722	12.326	1	428250			50236	1730	41599	41628	54308;54309	54309					0.07567369802995927
RPQSSRPVL	9	Unmodified	_RPQSSRPVL_					0	0	0		ENST00000483061.1_1_2:224765805-224810001:-|nuORF;ENSG00000085449|ENST00000233055|WDFY1	ENST00000483061.1_1_2:224765805-224810001:-|nuORF	ENST00000483061.1_1_2:224765805-224810001:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.3036499023438	2	520.30399	1038.59343	-1.4178	-0.00073771	0.95783	0.00049836	-0.46001	-0.00023935	520.3044588246823	43.464	1.4296	40.457	40.115	41.545	-3.0074					74	27	3	0	0	0	0.28934	2	2089	2089;2102		64.207	12.872	1	1834700			50237	1730	41599	41628	54310;54311	54310					0.07567369802995927
RPQSSRPVLL	10	Unmodified	_RPQSSRPVLL_					0	0	0		ENST00000483061.1_1_2:224765805-224810001:-|nuORF;ENSG00000085449|ENST00000233055|WDFY1	ENST00000483061.1_1_2:224765805-224810001:-|nuORF	ENST00000483061.1_1_2:224765805-224810001:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	576.8455200195312	2	576.846022	1151.67749	-1	-0.00057685	0.85653	0.00049408	-0.14348	-8.2768E-05	576.8465039370298	59.087	1.4948	56.307	55.838	57.333	-2.7801					87	28	4	0	0	0	0.19075	2	4297	4290;4297		95.815	19.041	1	457970			50238	1730	41600	41629	54312;54313	54313					0.1077190089990836
RPQSSRPVLL	10	Unmodified	_RPQSSRPVLL_					0	0	0		ENST00000483061.1_1_2:224765805-224810001:-|nuORF;ENSG00000085449|ENST00000233055|WDFY1	ENST00000483061.1_1_2:224765805-224810001:-|nuORF	ENST00000483061.1_1_2:224765805-224810001:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	576.8475952148438	2	576.846022	1151.67749	-0.18105	-0.00010444	-0.44635	-0.00025747	-0.6274	-0.00036191	576.8457104671397	59.831	1.4327	56.425	56.135	57.568	-3.4059					78	28	4	0	0	0	0.58067	1	4031	4031		44.377	1.981	1	756220			50239	1730	41600	41629	54314	54314					0.1077190089990836
RPQTGLSFL	9	Unmodified	_RPQTGLSFL_					0	0	0		ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	509.7860107421875	2	509.787641	1017.56073	-0.5453	-0.00027799	-0.25818	-0.00013162	-0.80348	-0.00040961	509.7875614476087	98.475	1.2896	97.582	97.264	98.554	-0.89305					60	25	4	0	0	0	0.1944	3	8964	8952;8958;8964		77.318	16.346	1	864690			50240	980	41601	41630	54315;54316;54317	54317					0.05265162680132107
RPQTGLSFL	9	Unmodified	_RPQTGLSFL_					0	0	0		ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	509.7864685058594	2	509.787641	1017.56073	-0.47398	-0.00024163	0.044135	2.25E-05	-0.42985	-0.00021913	509.7876879707187	99.387	1.1121	97.702	97.373	98.485	-1.685					62	21	4	0	0	0	0.17606	2	6698	6698;6704		80.455	23.734	1	1006700			50241	980	41601	41630	54318;54319	54318					0.05265162680132107
RPQTGLSFL	9	Unmodified	_RPQTGLSFL_					0	0	0		ENST00000596386.1_1_19:40477100-40485896:+|nuORF;ENST00000593455.5_1_19:40477100-40486089:+|nuORF;nc|ENSG00000013275|P43686-2|PSMC4;ENSG00000013275|ENST00000157812|PSMC4;ENST00000601697.5_1_19:40477100-40486546:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	ENST00000596386.1_1_19:40477100-40485896:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.7872009277344	2	509.787641	1017.56073	-1.2446	-0.00063447	0.85155	0.00043411	-0.39302	-0.00020036	509.7880425312576	100.01	1.413	97.686	97.366	98.779	-2.3253					76	27	4	0	0	0	0.16264	3	8927	8927;8937;8949		82.75	19.444	1	950250			50242	980	41601	41630	54320;54321;54322	54320					0.05265162680132107
RPQVTKPS	8	Unmodified	_RPQVTKPS_					0	0	0			REV__tr|A0A553SNG2|A0A553SNG2_NIACIMinortailproteinZOS=NialliacirculansOX=1397GN=CEQ21_24430PE=4SV=1	REV__tr|A0A553SNG2|A0A553SNG2_NIACIMinortailproteinZOS=NialliacirculansOX=1397GN=CEQ21_24430PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	456.7668151855469	2	456.766709	911.518865	-1.0943	-0.00049982	1.1247	0.00051372	0.03042	1.3895E-05	456.76710390256716	37.466	1.7255	34.756	34.386	36.112	-2.7097					82	34	4	0	0	0	0.57734	3	1677	1677;1720;1733		68.787	5.4305	1	799280	+		50243	30421	41602	41631	54323;54324;54325	54323					0.05956606991617264
RPQVTKPS	8	Unmodified	_RPQVTKPS_					0	0	0			REV__tr|A0A553SNG2|A0A553SNG2_NIACIMinortailproteinZOS=NialliacirculansOX=1397GN=CEQ21_24430PE=4SV=1	REV__tr|A0A553SNG2|A0A553SNG2_NIACIMinortailproteinZOS=NialliacirculansOX=1397GN=CEQ21_24430PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.76776123046875	2	456.766709	911.518865	0.94223	0.00043038	-1.2537	-0.00057266	-0.31149	-0.00014228	456.7661570731372	37.409	3.2302	34.517	33.894	37.124	-2.8925					138	64	4	0	0	0	0.35821	3	1437	1411;1437;1459		96.19	19.416	1	3176200	+		50244	30421	41602	41631	54326;54327;54328	54327					0.05956606991617264
RPRAALLSR	9	Unmodified	_RPRAALLSR_					0	0	0			REV__ENST00000451237.2_1_6:33244956-33245115:+|nuORF	REV__ENST00000451237.2_1_6:33244956-33245115:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.8422241210938	2	520.327799	1038.64105	0.41733	0.00021715	-3.1694	-0.0016491	-2.7521	-0.001432	520.825896819633	103.78	0.41868	102.35	102.24	102.66	-1.4347					9	7	2	0	0	0	0.027453	1	7210	7210		45.972	1.5951	1	10437	+		50245	25968	41603	41632	54329	54329					0.12327068793820217
RPRAALLSR	9	Unmodified	_RPRAALLSR_					0	0	0			REV__ENST00000451237.2_1_6:33244956-33245115:+|nuORF	REV__ENST00000451237.2_1_6:33244956-33245115:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.8419799804688	2	520.327799	1038.64105	-0.69207	-0.00036011	-0.36907	-0.00019204	-1.0611	-0.00055214	520.8278523329855	104.73	0.15725	102.61	102.48	102.64	-2.1192					4	2	2	0	0	0	0.027433	1	9476	9476		45.972	8.9438	1	5658.7	+		50246	25968	41603	41632	54330	54330					0.12327068793820217
RPRAGASISTL	11	Unmodified	_RPRAGASISTL_					0	0	0		nc|ENSG00000132912|Q9UJW0-2|DCTN4;ENSG00000132912|ENST00000447998|DCTN4;nc|ENSG00000132912|Q9UJW0-3|DCTN4;ENST00000519313.5_1_5:150110976-150138143:-|nuORF	nc|ENSG00000132912|Q9UJW0-2|DCTN4	nc|ENSG00000132912|Q9UJW0-2|DCTN4	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.8294677734375	2	564.827829	1127.64111	1.1597	0.00065501	-1.5122	-0.00085416	-0.35259	-0.00019915	564.826863229148	56.435	1.8282	53.14	52.92	54.748	-3.2944					87	35	5	0	0	0	0.56391	1	3626	3626		47.96	3.8427	1	938020			50247	4183	41604	41633	54331	54331					0.08239024003182749
RPRAGLGLLL	10	Unmodified	_RPRAGLGLLL_					0	0	0		ENST00000311177.6_1_17:46698590-46699007:-|nuORF	ENST00000311177.6_1_17:46698590-46699007:-|nuORF	ENST00000311177.6_1_17:46698590-46699007:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	533.348388671875	2	533.3482	1064.68185	-0.32178	-0.00017162	-0.064184	-3.4232E-05	-0.38596	-0.00020585	533.3481150232365	93.925	1.7195	91.964	91.577	93.296	-1.9617					119	33	5	0	0	0	0.45225	1	6047	6047		60.972	5.4677	1	1484200			50248	10295	41605	41634	54332	54332					0.15209410113470767
RPRAGRRDEAG	11	Unmodified	_RPRAGRRDEAG_					0	0	0		ENSG00000125834|ENST00000381482|STK35	ENSG00000125834|ENST00000381482|STK35	ENSG00000125834|ENST00000381482|STK35	MULTI-MSMS	OvCa9_classI_Rep4_	4	620.8342895507812	2	620.834508	1239.65446	-0.68914	-0.00042784	-1.995	-0.0012385	-2.6841	-0.0016664	620.8333023613861	91.824	2.0147	89.282	88.962	90.976	-2.5425					108	39	5	0	0	0	0.39237	2	7977	7952;7977		61.691	26.073	1	604550			50249	3741	41606	41635	54333;54334	54334					0.044222748351330665
RPRAPEARA	9	Unmodified	_RPRAPEARA_					0	0	0			REV__ENST00000507881.5_1_5:176882103-176882310:+|nuORF	REV__ENST00000507881.5_1_5:176882103-176882310:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.2938842773438	2	512.293956	1022.57336	0.73059	0.00037427	-0.77108	-0.00039502	-0.040496	-2.0746E-05	512.2934110538755	35.064	1.2028	32.215	31.936	33.139	-2.849					59	23	3	0	0	0	0.51865	1	1109	1109		40.778	6.6056	1	329190	+		50250	26906	41607	41636	54335	54335					0.0629761886302731
RPRAPIIAV	9	Unmodified	_RPRAPIIAV_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;ENSG00000067225|ENST00000335181|PKM;nc|ENSG00000067225|P14618-2|PKM;ENST00000565143.1_1_15:72491993-72493046:-|nuORF	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	MULTI-MSMS	OvCa9_classI_Rep2	2	496.82086181640625	2	496.821818	991.629084	0.55037	0.00027344	-0.80506	-0.00039997	-0.25468	-0.00012653	496.82125614164835	71.023	1.778	68.452	68.114	69.892	-2.5707					72	33	4	0	0	0	0.53957	1	5712	5712		38.806	6.8513	1	430660			50251	1372	41608	41637	54336	54336					0.13293452050652377
RPRAPIIAV	9	Unmodified	_RPRAPIIAV_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;ENSG00000067225|ENST00000335181|PKM;nc|ENSG00000067225|P14618-2|PKM;ENST00000565143.1_1_15:72491993-72493046:-|nuORF	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	MULTI-MSMS	OvCa9_classI_Rep3	3	496.8220520019531	2	496.821818	991.629084	0.21016	0.00010441	-0.44989	-0.00022352	-0.23973	-0.0001191	496.82152545075974	71.168	1.942	68.465	68.025	69.967	-2.7032					97	38	4	0	0	0	0.32337	3	3301	3289;3301;3324		60.294	19.721	1	703360			50252	1372	41608	41637	54337;54338;54339	54338					0.13293452050652377
RPRAPVRLL	9	Unmodified	_RPRAPVRLL_					0	0	0		ENSG00000204839|ENST00000398882|MROH6	ENSG00000204839|ENST00000398882|MROH6	ENSG00000204839|ENST00000398882|MROH6	MULTI-MSMS	OvCa9_classI_Rep3	3	539.3534545898438	2	539.353817	1076.69308	2.2939	0.0012372	-2.3996	-0.0012943	-0.10574	-5.7029E-05	539.3523735364151	63.128	1.3441	60.094	59.756	61.1	-3.0339					58	26	3	0	0	0	0.62352	1	2349	2349		29.15	11.785	1	102560			50253	9030	41609	41638	54340	54340					0.15780232207612244
RPRARCSLC	9	2 Carbamidomethyl (C)	_RPRARC(Carbamidomethyl (C))SLC(Carbamidomethyl (C))_	RPRARC(1)SLC(1)		RPRARC(79)SLC(79)		0	2	0		ENST00000251453.7_1_19:39926293-39926579:-|nuORF;ENST00000601655.5_2_19:39924352-39926579:-|nuORF	ENST00000251453.7_1_19:39926293-39926579:-|nuORF	ENST00000251453.7_1_19:39926293-39926579:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	588.3009033203125	2	588.297859	1174.58116	-0.4243	-0.00024961	4.0091	0.0023586	3.5849	0.002109	588.3001914952855	63.758	1.3538	60.283	59.868	61.222	-3.475					76	27	3	0	0	0	0.18193	2	4490	4481;4490		79.451	7.5735	1	1274500			50254	9798	41610	41639	54341;54342	54342	99;100				0.0008568679666041135
RPRARCSLC	9	2 Carbamidomethyl (C)	_RPRARC(Carbamidomethyl (C))SLC(Carbamidomethyl (C))_					0	2	0		ENST00000251453.7_1_19:39926293-39926579:-|nuORF;ENST00000601655.5_2_19:39924352-39926579:-|nuORF	ENST00000251453.7_1_19:39926293-39926579:-|nuORF	ENST00000251453.7_1_19:39926293-39926579:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	588.297859	1174.58116	-2.1699	-0.0012766	6.4446	0.0037914	4.2747	0.0025148	588.3016068645464	62.972	1.1934	60.228	59.597	60.79	-2.7444	-0.027537	0.0010932	NaN	79.451	57	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236300			50255	9798	41610	41639			99;100				0.0008568679666041135
RPRARGLQH	9	Unmodified	_RPRARGLQH_					0	0	0		ENST00000562171.1_1_16:68119636-68160404:+|nuORF	ENST00000562171.1_1_16:68119636-68160404:+|nuORF	ENST00000562171.1_1_16:68119636-68160404:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	545.8206787109375	2	545.820673	1089.62679	-1.0728	-0.00058556	3.0275	0.0016525	1.9547	0.0010669	545.822343651499	84.091	2.1648	82.545	82.223	84.388	-1.5462					84	42	4	0	0	0	0.38529	2	7229	7224;7229		53.351	12.573	1	714100			50256	13766	41611	41640	54343;54344	54344					0.08556416365559016
RPRARGLQH	9	Unmodified	_RPRARGLQH_					0	0	0		ENST00000562171.1_1_16:68119636-68160404:+|nuORF	ENST00000562171.1_1_16:68119636-68160404:+|nuORF	ENST00000562171.1_1_16:68119636-68160404:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	545.822998046875	2	545.820673	1089.62679	-1.3837	-0.00075525	2.8957	0.0015805	1.512	0.00082528	545.8224822169554	85.33	1.6383	83.11	82.548	84.187	-2.2204					113	32	6	0	0	0	0.24951	2	5017	5017;5024		68.787	19.251	1	985100			50257	13766	41611	41640	54345;54346	54345					0.08556416365559016
RPRARPTPG	9	Unmodified	_RPRARPTPG_					0	0	0			REV__SLC4A2|p.F726Lfs*12|1|0.27|ENSG00000164889|chr7:151071590-151071590|T/-|frameshift_variant	REV__SLC4A2|p.F726Lfs*12|1|0.27|ENSG00000164889|chr7:151071590-151071590|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	504.29656982421875	2	504.296499	1006.57845	-0.51106	-0.00025773	0.13731	6.9246E-05	-0.37375	-0.00018848	504.2965168618611	31.671	1.532	28.961	28.69	30.222	-2.7097					81	30	4	0	0	0	0.14998	2	975	975;1013		84.916	10.005	1	812760	+		50258	21031	41612	41641	54347;54348	54347					0.07541922725658878
RPRARVRWKG	10	Unmodified	_RPRARVRWKG_					0	0	0			REV__ENST00000552014.5_1_12:113770667-113772302:-|nuORF	REV__ENST00000552014.5_1_12:113770667-113772302:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	641.38525390625	2	641.391796	1280.76904	-6.9547	-0.0044607	-3.9402	-0.0025272	-10.895	-0.0069879	641.3889588117827	161.52	1.4957	160.15	159.74	161.23	-1.3692					63	30	3	0	0	0	0.86416	1	14040	14040		10.866	0.6003	1	83087	+		50259	27492	41613	41642	54349	54349					0.13988629107734596
RPRASPSL	8	Unmodified	_RPRASPSL_					0	0	0			REV__ENSG00000108387|ENST00000672673|SEPTIN4	REV__ENSG00000108387|ENST00000672673|SEPTIN4	MULTI-MSMS	OvCa9_classI_Rep4_	4	442.25885009765625	2	442.259051	882.503549	0.037965	1.679E-05	-0.16544	-7.3169E-05	-0.12748	-5.6379E-05	442.2588141194549	38.55	1.6359	35.623	35.255	36.891	-2.9264					67	32	3	0	0	0	0.67745	1	1503	1503		47.916	7.343	1	275170	+		50260	17884	41614	41643	54350	54350					0.05759740194423557
RPRASPSL	8	Unmodified	_RPRASPSL_					0	0	0			REV__ENSG00000108387|ENST00000672673|SEPTIN4	REV__ENSG00000108387|ENST00000672673|SEPTIN4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	442.259051	882.503549	0.077496	3.4273E-05	-0.13018	-5.7575E-05	-0.052687	-2.3301E-05	442.25882840804957	38.369	1.0394	35.659	35.469	36.509	-2.7097	0.018041	2.3752E-05	NaN	47.916	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65250	+		50261	17884	41614	41643							0.05759740194423557
RPRCCSMTRWR	11	Unmodified	_RPRCCSMTRWR_					0	0	0		ENST00000590533.1_1_19:2807573-2808419:+|nuORF	ENST00000590533.1_1_19:2807573-2808419:+|nuORF	ENST00000590533.1_1_19:2807573-2808419:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.2708740234375	3	484.569158	1450.68565	-1.6819	-0.00081498	-2.5435	-0.0012325	-4.2254	-0.0020475	484.5678836286985	49.052	0.883	45.911	45.675	46.558	-3.1416					26	16	2	0	0	0	0.025863	1	2804	2804		31.068	9.2877	1	59524			50262	14109	41615	41644	54351	54351					-0.0216693471832059
RPRDALPRLL	10	Unmodified	_RPRDALPRLL_					0	0	0		ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5	ENSG00000164818|ENST00000297440|DNAAF5	ENSG00000164818|ENST00000297440|DNAAF5	MULTI-MSMS	OvCa9_classI_Rep2	2	402.9181823730469	3	402.919168	1205.73567	1.5611	0.00062899	-1.5793	-0.00063634	-0.018233	-7.3465E-06	402.9184684677124	78.539	1.824	76.799	76.353	78.177	-1.7398					99	35	4	0	0	0	0.49595	3	6575	6570;6575;6595		54.722	20.801	1	333230			50263	6489	41616	41645	54352;54353;54354	54353					0.1410358254518087
RPRDALPRLL	10	Unmodified	_RPRDALPRLL_					0	0	0		ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5	ENSG00000164818|ENST00000297440|DNAAF5	ENSG00000164818|ENST00000297440|DNAAF5	MULTI-MSMS	OvCa9_classI_Rep4_	4	402.9203186035156	3	402.919168	1205.73567	1.2395	0.00049944	-1.5141	-0.00061007	-0.27458	-0.00011064	402.91844516028914	80.055	1.5111	77.306	76.846	78.357	-2.7495					86	30	4	0	0	0	0.6898	3	6525	6513;6525;6536		31.634	3.9903	1	395630			50264	6489	41616	41645	54355;54356;54357	54356					0.1410358254518087
RPRDALPRLL	10	Unmodified	_RPRDALPRLL_					0	0	0		ENSG00000164818|ENST00000297440|DNAAF5;nc|ENSG00000164818|Q86Y56-2|DNAAF5	ENSG00000164818|ENST00000297440|DNAAF5	ENSG00000164818|ENST00000297440|DNAAF5	MULTI-MATCH	OvCa9_classI_Rep3	3		3	402.919168	1205.73567	1.2649	0.00050967	-1.5292	-0.00061616	-0.2643	-0.00010649	402.9184997442987	79.758	2.0879	77.418	76.952	79.039	-2.3399	0.056069	-3.7294E-06	NaN	31.634	110	40	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	379780			50265	6489	41616	41645							0.1410358254518087
RPRDRRPH	8	Unmodified	_RPRDRRPH_					0	0	0		ENST00000565468.5_1_7:140774442-140912397:+|nuORF	ENST00000565468.5_1_7:140774442-140912397:+|nuORF	ENST00000565468.5_1_7:140774442-140912397:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.311767578125	2	545.310472	1088.60639	0.53816	0.00029346	1.6291	0.00088837	2.1673	0.0011818	545.3112887104521	36.76	1.3955	33.868	33.395	34.791	-2.8925					73	27	5	0	0	0	0.4531	3	1321	1297;1321;1348		82.241	7.1972	1	755870			50266	13820	41617	41646	54358;54359;54360	54359					0.06563245705751797
RPRDRRPH	8	Unmodified	_RPRDRRPH_					0	0	0		ENST00000565468.5_1_7:140774442-140912397:+|nuORF	ENST00000565468.5_1_7:140774442-140912397:+|nuORF	ENST00000565468.5_1_7:140774442-140912397:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	545.310472	1088.60639	-2.7951	-0.0015242	5.1167	0.0027902	2.3215	0.0012659	545.3131823387719	36.778	0.98604	34.069	33.844	34.83	-2.7097	0.10046	0.0023537	NaN	82.241	48	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194620			50267	13820	41617	41646							0.06563245705751797
RPRDTRRISL	10	Unmodified	_RPRDTRRISL_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	OvCa9_classI_Rep2	2	423.92138671875	3	423.92146	1268.74255	0.4048	0.00017161	-0.43526	-0.00018452	-0.03046	-1.2913E-05	423.92128381620927	43.861	1.6901	41.151	40.857	42.547	-2.7097					105	33	5	0	0	0	0.4826	3	2447	2447;2452;2477		56.632	22.546	1	640520			50268	2309	41618	41647	54361;54362;54363	54361					0.11892895425762617
RPRDTRRISL	10	Unmodified	_RPRDTRRISL_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	OvCa9_classI_Rep4_	4	423.9225769042969	3	423.92146	1268.74255	-1.1128	-0.00047175	1.4439	0.0006121	0.33107	0.00014035	423.9220487542345	43.946	1.8813	40.938	40.693	42.574	-3.0074					92	36	5	0	0	0	0.52162	1	2145	2145		51.528	21.977	1	561530			50269	2309	41618	41647	54364	54364					0.11892895425762617
RPREAEVRF	9	Unmodified	_RPREAEVRF_					0	0	0		nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;ENST00000552787.5_1_12:58089581-58109758:+|nuORF;ENST00000549307.5_1_12:58089922-58109758:+|nuORF	nc|ENSG00000135506|Q13438-4|OS9	nc|ENSG00000135506|Q13438-4|OS9	MULTI-MSMS	OvCa9_classI_Rep2	2	580.320556640625	2	580.320171	1158.62579	-1.1219	-0.00065106	0.76663	0.00044489	-0.35527	-0.00020617	580.3205275503568	48.28	1.7369	45.57	45.083	46.82	-2.7097					101	34	4	0	0	0	0.060996	12	2980	2964;2969;2974;2980;2985;2991;2997;3005;3011;3018;3031;3037		112.41	48.204	1	548460			50270	4384	41619	41648	54365;54366;54367;54368;54369;54370;54371;54372;54373;54374;54375;54376	54368					0.05282157205988369
RPREAEVRF	9	Unmodified	_RPREAEVRF_					0	0	0		nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;ENST00000552787.5_1_12:58089581-58109758:+|nuORF;ENST00000549307.5_1_12:58089922-58109758:+|nuORF	nc|ENSG00000135506|Q13438-4|OS9	nc|ENSG00000135506|Q13438-4|OS9	MULTI-MSMS	OvCa9_classI_Rep4_	4	580.3215942382812	2	580.320171	1158.62579	-1.9608	-0.0011379	1.4168	0.00082218	-0.54403	-0.00031571	580.3208655543624	48.791	1.764	45.683	45.244	47.008	-3.1077					84	33	3	0	0	0	0.07097	3	2705	2705;2715;2726		106.68	37.055	1	582480			50271	4384	41619	41648	54377;54378;54379	54377					0.05282157205988369
RPREAEVRFL	10	Unmodified	_RPREAEVRFL_					0	0	0		nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;ENST00000552787.5_1_12:58089581-58109758:+|nuORF;ENST00000549307.5_1_12:58089922-58109758:+|nuORF	nc|ENSG00000135506|Q13438-4|OS9	nc|ENSG00000135506|Q13438-4|OS9	MULTI-MSMS	OvCa9_classI_Rep2	2	424.91094970703125	3	424.910561	1271.70985	0.58214	0.00024736	-1.0641	-0.00045213	-0.48192	-0.00020477	424.9101953118264	65.035	3.3544	62.311	61.917	65.271	-2.7245					218	66	6	0	0	0	0.32747	12	4971	4965;4971;4977;4983;4995;5001;5007;5013;5020;5026;5032;5045		77.533	30.514	1	5411100			50272	4384	41620	41649	54380;54381;54382;54383;54384;54385;54386;54387;54388;54389;54390;54391	54381					0.08486688302878065
RPREAEVRFL	10	Unmodified	_RPREAEVRFL_					0	0	0		nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;ENST00000552787.5_1_12:58089581-58109758:+|nuORF;ENST00000549307.5_1_12:58089922-58109758:+|nuORF	nc|ENSG00000135506|Q13438-4|OS9	nc|ENSG00000135506|Q13438-4|OS9	MULTI-MSMS	OvCa9_classI_Rep2	2	636.862060546875	2	636.862203	1271.70985	-0.2172	-0.00013833	0.22789	0.00014514	0.010691	6.8089E-06	636.8622446253172	65.035	1.518	62.311	61.97	63.488	-2.7245					82	29	4	0	0	0	0.17901	1	4993	4993		96.034	20.99	1	380610			50273	4384	41620	41649	54392	54392					0.08486688302878065
RPREAEVRFL	10	Unmodified	_RPREAEVRFL_					0	0	0		nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;ENST00000552787.5_1_12:58089581-58109758:+|nuORF;ENST00000549307.5_1_12:58089922-58109758:+|nuORF	nc|ENSG00000135506|Q13438-4|OS9	nc|ENSG00000135506|Q13438-4|OS9	MULTI-MSMS	OvCa9_classI_Rep3	3	424.9106750488281	3	424.910561	1271.70985	1.7676	0.00075109	-1.9367	-0.00082293	-0.16909	-7.1846E-05	424.90976624626023	65.471	1.3717	62.526	62.148	63.519	-2.9459					98	26	5	0	0	0	0.52162	11	2664	2609;2615;2621;2627;2639;2645;2664;2670;2676;2688;2700		51.528	18.777	1	905110			50274	4384	41620	41649	54393;54394;54395;54396;54397;54398;54399;54400;54401;54402;54403	54399					0.08486688302878065
RPREAEVRFL	10	Unmodified	_RPREAEVRFL_					0	0	0		nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;ENST00000552787.5_1_12:58089581-58109758:+|nuORF;ENST00000549307.5_1_12:58089922-58109758:+|nuORF	nc|ENSG00000135506|Q13438-4|OS9	nc|ENSG00000135506|Q13438-4|OS9	MULTI-MSMS	OvCa9_classI_Rep4_	4	424.911376953125	3	424.910561	1271.70985	-0.80186	-0.00034072	0.37334	0.00015864	-0.42852	-0.00018208	424.9107683657722	66.023	3.824	62.538	62.082	65.906	-3.4854					206	77	5	0	0	0	0.31125	7	4765	4765;4789;4802;4813;4826;4838;4852		79.489	33.581	1	5539100			50275	4384	41620	41649	54404;54405;54406;54407;54408;54409;54410	54404					0.08486688302878065
RPREAEVRFL	10	Unmodified	_RPREAEVRFL_					0	0	0		nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;ENST00000552787.5_1_12:58089581-58109758:+|nuORF;ENST00000549307.5_1_12:58089922-58109758:+|nuORF	nc|ENSG00000135506|Q13438-4|OS9	nc|ENSG00000135506|Q13438-4|OS9	MULTI-MSMS	OvCa9_classI_Rep4_	4	636.8639526367188	2	636.862203	1271.70985	-0.71178	-0.0004533	0.81078	0.00051636	0.099007	6.3054E-05	636.8626252224701	66.015	1.4178	62.53	62.276	63.694	-3.4854					77	28	4	0	0	0	0.027228	2	4775	4775;4786		106.68	16.082	1	566960			50276	4384	41620	41649	54411;54412	54411					0.08486688302878065
RPREAEVRFL	10	Unmodified	_RPREAEVRFL_					0	0	0		nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;ENST00000552787.5_1_12:58089581-58109758:+|nuORF;ENST00000549307.5_1_12:58089922-58109758:+|nuORF	nc|ENSG00000135506|Q13438-4|OS9	nc|ENSG00000135506|Q13438-4|OS9	MULTI-MATCH	OvCa9_classI_Rep3	3		2	636.862203	1271.70985	1.2799	0.00081513	-0.58328	-0.00037147	0.69664	0.00044367	636.861358606092	65.443	1.0159	62.497	62.249	63.265	-2.9459	0.051251	-0.0012252	NaN	106.68	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55410			50277	4384	41620	41649							0.08486688302878065
RPREDRRLP	9	Unmodified	_RPREDRRLP_					0	0	0			REV__ENST00000412877.1_1_3:184079592-184081026:+|nuORF	REV__ENST00000412877.1_1_3:184079592-184081026:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8438720703125	2	597.844345	1193.67414	-1.062	-0.00063494	0.78915	0.00047179	-0.2729	-0.00016315	597.8448623061217	39.625	1.1911	36.915	36.509	37.7	-2.7097					64	23	4	0	0	0	0.46356	1	1939	1939		45.972	5.1941	1	140150	+		50278	25500	41621	41650	54413	54413					0.08504650845884498
RPREGAGRV	9	Unmodified	_RPREGAGRV_					0	0	0		ENST00000272519.9_1_2:121010448-121010505:+|nuORF	ENST00000272519.9_1_2:121010448-121010505:+|nuORF	ENST00000272519.9_1_2:121010448-121010505:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	499.2857360839844	2	499.286131	996.55771	1.4373	0.00071765	-1.3837	-0.00069087	0.053637	2.678E-05	499.2852483844891	28.641	0.87767	25.931	25.716	26.594	-2.7097					28	18	3	0	0	0	0.28934	2	615	615;620		64.207	14.183	1	139830			50279	9998	41622	41651	54414;54415	54414					0.05929332345999683
RPREISVLRM	10	Oxidation (M)	_RPREISVLRM(Oxidation (M))_		RPREISVLRM(1)		RPREISVLRM(65)	0	0	1		ENST00000391858.8_1_1:231473718-231473790:+|nuORF	ENST00000391858.8_1_1:231473718-231473790:+|nuORF	ENST00000391858.8_1_1:231473718-231473790:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	636.8630981445312	2	636.863889	1271.71322	-0.2172	-0.00013833	-2.4185	-0.0015403	-2.6357	-0.0016786	636.8622446253172	65.035	1.518	62.311	61.97	63.488	-2.7245					82	29	4	0	0	0	0.42082	1	4987	4987		65.465	12.529	1	380610			50280	11209	41623	41652	54416	54416		317			0.08823615085225356
RPRERPPQL	9	Unmodified	_RPRERPPQL_					0	0	0			REV__ENST00000235307.6_1_1:184356254-184446568:+|nuORF	REV__ENST00000235307.6_1_1:184356254-184446568:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	575.3366088867188	2	574.835988	1147.65742	2.3077	0.0013266	-2.3956	-0.0013771	-0.087874	-5.0513E-05	574.8337239280571	100.59	0.87207	100.59	100.36	101.23	0					58	20	4	0	0	0	0.48324	1	11162	11162		44.117	3.3386	1	2065800	+		50281	23804	41624	41653	54417	54417					0.08950149959923692
RPRETRVIAVL	11	Unmodified	_RPRETRVIAVL_					0	0	0		nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF	nc|ENSG00000179583|P33076|CIITA	nc|ENSG00000179583|P33076|CIITA	MULTI-MSMS	OvCa9_classI_Rep2	2	437.27386474609375	3	437.273611	1308.799	-0.13517	-5.9107E-05	-0.14539	-6.3574E-05	-0.28056	-0.00012268	437.2735418163394	68.807	1.9959	66.187	65.77	67.766	-2.6203					109	39	4	0	0	0	0.63942	2	5449	5436;5449		41.08	5.0643	1	800580			50282	7832	41625	41654	54418;54419	54419					0.1569552326241137
RPRETRVIAVL	11	Unmodified	_RPRETRVIAVL_					0	0	0		nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF	nc|ENSG00000179583|P33076|CIITA	nc|ENSG00000179583|P33076|CIITA	MULTI-MSMS	OvCa9_classI_Rep3	3	437.2742614746094	3	437.273611	1308.799	1.0101	0.00044167	-1.2433	-0.00054365	-0.23323	-0.00010198	437.27305961907143	69.199	2.757	66.384	66.063	68.82	-2.8144					169	54	5	0	0	0	0.43443	4	3104	3049;3053;3091;3104		58.63	18.033	1	1037200			50283	7832	41625	41654	54420;54421;54422;54423	54423					0.1569552326241137
RPRETRVIAVL	11	Unmodified	_RPRETRVIAVL_					0	0	0		nc|ENSG00000179583|P33076|CIITA;ENSG00000179583|ENST00000324288|CIITA;nc|ENSG00000179583|P33076-2|CIITA;ENST00000573309.5_1_16:10971115-11002148:+|nuORF;nc|ENSG00000179583|P33076-4|CIITA;ENST00000570546.5_1_16:10971115-11002148:+|nuORF	nc|ENSG00000179583|P33076|CIITA	nc|ENSG00000179583|P33076|CIITA	MULTI-MSMS	OvCa9_classI_Rep4_	4	437.2748107910156	3	437.273611	1308.799	-0.48192	-0.00021073	0.26656	0.00011656	-0.21537	-9.4173E-05	437.2736694937968	70.283	1.7065	66.802	66.393	68.099	-3.4812					97	34	4	0	0	0	0.69015	1	5303	5303		33.039	3.7944	1	688450			50284	7832	41625	41654	54424	54424					0.1569552326241137
RPRETTQLP	9	Unmodified	_RPRETTQLP_					0	0	0		ENSG00000115884|ENST00000254351|SDC1	ENSG00000115884|ENST00000254351|SDC1	ENSG00000115884|ENST00000254351|SDC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.7874755859375	2	549.306729	1096.59891	0.76712	0.00042139	-1.1534	-0.00063358	-0.38629	-0.00021219	549.3057714072054	36.48	0.84629	33.616	33.424	34.27	-2.8641					28	16	2	0	0	0	0.027462	1	1246	1246		39.253	13.679	1	122720			50285	3134	41626	41655	54425	54425					0.05447048594805892
RPRETTQLP	9	Unmodified	_RPRETTQLP_					0	0	0		ENSG00000115884|ENST00000254351|SDC1	ENSG00000115884|ENST00000254351|SDC1	ENSG00000115884|ENST00000254351|SDC1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	549.306729	1096.59891	-2.4008	-0.0013188	1.153	0.00063337	-1.2478	-0.00068543	549.3069366768984	36.603	0.59135	33.894	33.696	34.287	-2.7097	0.13867	0.0018776	NaN	24.519	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29155			50286	3134	41626	41655							0.05447048594805892
RPRFPRRYRPR	11	Unmodified	_RPRFPRRYRPR_					0	0	0			REV__ENSG00000006047|ENST00000007699|YBX2	REV__ENSG00000006047|ENST00000007699|YBX2	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.8121337890625	3	519.643031	1555.90726	1.5212	0.0007905	1.2334	0.00064091	2.7546	0.0014314	519.6436630319762	87.441	0.39709	86.009	85.891	86.288	-1.4311					9	7	2	0	0	0	0.026497	1	7639	7639		6.001	3.467	1	19845	+		50287	16408	41627	41656	54426	54426					0.15154752356193057
RPRGAIIS	8	Unmodified	_RPRGAIIS_					0	0	0			REV__TENM2|p.M1454Rfs*17|1|0.05|ENSG00000145934|chr5:168218249-168218250|-/GAGAG|frameshift_variant	REV__TENM2|p.M1454Rfs*17|1|0.05|ENSG00000145934|chr5:168218249-168218250|-/GAGAG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	435.26885986328125	2	435.269419	868.524284	0.23662	0.00010299	-0.62435	-0.00027176	-0.38773	-0.00016877	435.2689830666612	39.634	0.74438	36.685	36.373	37.118	-2.9485					37	14	3	0	0	0	0.72896	1	1647	1647		37.159	0.13063	1	317580	+		50288	29492	41628	41657	54427	54427					0.08476330574092117
RPRGAIIS	8	Unmodified	_RPRGAIIS_					0	0	0			REV__TENM2|p.M1454Rfs*17|1|0.05|ENSG00000145934|chr5:168218249-168218250|-/GAGAG|frameshift_variant	REV__TENM2|p.M1454Rfs*17|1|0.05|ENSG00000145934|chr5:168218249-168218250|-/GAGAG|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	435.269419	868.524284	-0.27907	-0.00012147	0.15012	6.5342E-05	-0.12895	-5.6128E-05	435.26920226774274	39.543	0.74468	36.833	36.607	37.352	-2.7097	0.073682	0.00054858	NaN	37.159	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72094	+		50289	29492	41628	41657							0.08476330574092117
RPRGFAYVQF	10	Unmodified	_RPRGFAYVQF_					0	0	0		nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;nc|ENSG00000188529|O75494-2|SRSF10;ENSG00000154548|ENST00000452027|SRSF12;ENSG00000188529|ENST00000492112|SRSF10	nc|ENSG00000188529|O75494-5|SRSF10	nc|ENSG00000188529|O75494-5|SRSF10	MULTI-MSMS	OvCa9_classI_Rep2	2	620.832275390625	2	620.832914	1239.65128	1.1181	0.00069417	-1.488	-0.0009238	-0.36987	-0.00022963	620.8319526906673	90.059	2.0377	88.757	88.433	90.47	-1.302					99	39	5	0	0	0	0.41036	3	7950	7945;7950;7957		47.657	25.975	1	514120			50290	5745	41629	41658	54428;54429;54430	54429					0.041036317283897006
RPRGFAYVQF	10	Unmodified	_RPRGFAYVQF_					0	0	0		nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;nc|ENSG00000188529|O75494-2|SRSF10;ENSG00000154548|ENST00000452027|SRSF12;ENSG00000188529|ENST00000492112|SRSF10	nc|ENSG00000188529|O75494-5|SRSF10	nc|ENSG00000188529|O75494-5|SRSF10	MULTI-MSMS	OvCa9_classI_Rep4_	4	620.8346557617188	2	620.832914	1239.65128	-0.68915	-0.00042784	0.57246	0.0003554	-0.11669	-7.2443E-05	620.8333023613861	91.824	2.0147	89.282	88.962	90.976	-2.5425					108	39	5	0	0	0	0.41036	1	7964	7964		54.776	0	1	604550			50291	5745	41629	41658	54431	54431					0.041036317283897006
RPRGFAYVQF	10	Unmodified	_RPRGFAYVQF_					0	0	0		nc|ENSG00000188529|O75494-5|SRSF10;nc|ENSG00000188529|O75494-4|SRSF10;nc|ENSG00000188529|O75494-6|SRSF10;nc|ENSG00000188529|O75494-3|SRSF10;nc|ENSG00000188529|O75494-2|SRSF10;ENSG00000154548|ENST00000452027|SRSF12;ENSG00000188529|ENST00000492112|SRSF10	nc|ENSG00000188529|O75494-5|SRSF10	nc|ENSG00000188529|O75494-5|SRSF10	MULTI-MATCH	OvCa9_classI_Rep3	3		2	620.832914	1239.65128	0.058465	3.6297E-05	-0.41544	-0.00025792	-0.35698	-0.00022162	620.8325256437809	91.338	1.2952	89.314	88.93	90.225	-2.0241	0.015846	-0.00034032	NaN	54.776	93	25	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	683800			50292	5745	41629	41658							0.041036317283897006
RPRGGRAVL	9	Unmodified	_RPRGGRAVL_					0	0	0		ENST00000269321.11_1_17:79826257-79826755:-|nuORF	ENST00000269321.11_1_17:79826257-79826755:-|nuORF	ENST00000269321.11_1_17:79826257-79826755:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	491.305908203125	2	491.306867	980.599181	1.1945	0.00058685	-1.2606	-0.00061935	-0.066159	-3.2504E-05	491.3061090650175	36.013	1.3962	33.164	32.889	34.285	-2.849					58	27	3	0	0	0	0.55588	1	1214	1214		37.159	3.6435	1	216190			50293	9984	41630	41659	54432	54432					0.10810513105309383
RPRGLALVL	9	Unmodified	_RPRGLALVL_					0	0	0		nc|ENSG00000106144|P42575-2|CASP2;ENST00000493642.5_1_7:142986735-143000877:+|nuORF;ENST00000472067.1_1_7:142991698-142998016:+|nuORF;ENSG00000106144|ENST00000310447|CASP2	nc|ENSG00000106144|P42575-2|CASP2	nc|ENSG00000106144|P42575-2|CASP2	MULTI-MSMS	OvCa9_classI_Rep2	2	497.8287353515625	2	497.829643	993.644734	1.6522	0.0008225	-2.095	-0.0010429	-0.44279	-0.00022044	497.8285287048733	88.973	2.1743	87.605	87.231	89.406	-1.3676					112	43	4	0	0	0	0.14739	6	7815	7804;7815;7821;7827;7833;7840		85.359	40.828	1	825450			50294	2533	41631	41660	54433;54434;54435;54436;54437;54438	54434					0.14765738567689368
RPRGLALVL	9	Unmodified	_RPRGLALVL_					0	0	0		nc|ENSG00000106144|P42575-2|CASP2;ENST00000493642.5_1_7:142986735-143000877:+|nuORF;ENST00000472067.1_1_7:142991698-142998016:+|nuORF;ENSG00000106144|ENST00000310447|CASP2	nc|ENSG00000106144|P42575-2|CASP2	nc|ENSG00000106144|P42575-2|CASP2	MULTI-MSMS	OvCa9_classI_Rep3	3	497.83013916015625	2	497.829643	993.644734	-0.82413	-0.00041027	0.44661	0.00022234	-0.37752	-0.00018794	497.829829623416	90.268	2.2343	88.187	87.798	90.033	-2.0805					128	43	4	0	0	0	0.21395	3	5628	5604;5628;5634		73.975	13.282	1	1075500			50295	2533	41631	41660	54439;54440;54441	54440					0.14765738567689368
RPRGLALVL	9	Unmodified	_RPRGLALVL_					0	0	0		nc|ENSG00000106144|P42575-2|CASP2;ENST00000493642.5_1_7:142986735-143000877:+|nuORF;ENST00000472067.1_1_7:142991698-142998016:+|nuORF;ENSG00000106144|ENST00000310447|CASP2	nc|ENSG00000106144|P42575-2|CASP2	nc|ENSG00000106144|P42575-2|CASP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.8310241699219	2	497.829643	993.644734	-0.38661	-0.00019247	-0.044384	-2.2096E-05	-0.431	-0.00021456	497.8295675245135	90.817	2.34	88.242	87.904	90.244	-2.575					125	45	4	0	0	0	0.27546	2	7849	7837;7849		65.803	3.0123	1	856980			50296	2533	41631	41660	54442;54443	54443					0.14765738567689368
RPRGLRCSRL	10	Unmodified	_RPRGLRCSRL_					0	0	0		ENSG00000183579|ENST00000544604|ZNRF3	ENSG00000183579|ENST00000544604|ZNRF3	ENSG00000183579|ENST00000544604|ZNRF3	MULTI-MSMS	OvCa9_classI_Rep4_	4	607.354248046875	2	607.356565	1212.69858	-0.31245	-0.00018977	-3.9008	-0.0023692	-4.2133	-0.002559	607.3541822162564	45.888	1.7639	42.815	42.457	44.221	-3.0724					89	33	4	0	0	0	0.48398	1	2371	2371		56.434	0	1	952630			50297	8088	41632	41661	54444	54444					0.10073587727765698
RPRGLRRDG	9	Unmodified	_RPRGLRRDG_					0	0	0			REV__ENST00000291442.3_1_19:17351565-17356474:-|nuORF	REV__ENST00000291442.3_1_19:17351565-17356474:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	541.819580078125	2	541.81813	1081.62171	0.49267	0.00026694	1.7715	0.00095984	2.2642	0.0012268	541.8190905602746	72.496	2.1818	69.894	69.571	71.753	-2.6023					94	43	3	0	0	0	0.49652	1	3458	3458		42.864	2.0861	1	1635600	+		50298	24154	41633	41662	54445	54445					0.08416112502936812
RPRGPAALAR	10	Unmodified	_RPRGPAALAR_					0	0	0			REV__ENST00000315251.10_1_3:53857337-53857781:-|nuORF	REV__ENST00000315251.10_1_3:53857337-53857781:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	531.8433227539062	2	532.825424	1063.63629	-0.583	-0.00031064	2.0854	0.0011111	1.5024	0.0008005	532.8265464188648	86.778	1.1687	84.601	84.33	85.499	-2.1768					62	22	4	0	0	0	0.026681	1	5243	5243		62.107	17.991	1	430470	+		50299	24394	41634	41663	54446	54446					0.107021846510861
RPRGPAALAR	10	Unmodified	_RPRGPAALAR_					0	0	0			REV__ENST00000315251.10_1_3:53857337-53857781:-|nuORF	REV__ENST00000315251.10_1_3:53857337-53857781:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.8433227539062	2	532.825424	1063.63629	-1.5102	-0.00080468	2.9312	0.0015618	1.421	0.00075714	532.8267800115078	87.15	1.1523	84.523	84.25	85.403	-2.6269					59	22	4	0	0	0	0.026734	1	7488	7488		47.657	10.498	1	341020	+		50300	24394	41634	41663	54447	54447					0.107021846510861
RPRGPPPPP	9	Unmodified	_RPRGPPPPP_					0	0	0		SF3B2|p.V462Gfs*19|1|0.11|ENSG00000087365|chr11:66059579-66059579|T/-|frameshift_variant;ENSG00000087365|ENST00000322535|SF3B2;ENST00000525207.1_1_11:65824747-65825957:+|nuORF	SF3B2|p.V462Gfs*19|1|0.11|ENSG00000087365|chr11:66059579-66059579|T/-|frameshift_variant	SF3B2|p.V462Gfs*19|1|0.11|ENSG00000087365|chr11:66059579-66059579|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.7821960449219	2	485.782693	969.550834	-0.88197	-0.00042845	-0.45458	-0.00022083	-1.3366	-0.00064927	485.78245215486993	41.493	1.5954	38.512	38.023	39.618	-2.9804					80	30	4	0	0	0	0.50066	1	1871	1871		42.474	6.0277	1	157170			50301	1773	41635	41664	54448	54448					0.06484019465415258
RPRGRALGP	9	Unmodified	_RPRGRALGP_					0	0	0		nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;LAMA3|p.P1577Qfs*30|1|0.03|ENSG00000053747|chr18:23867879-23867879|C/-|frameshift_variant;LAMA3|p.L875Rfs*31|1|0.13|ENSG00000053747|chr18:23826753-23826763|CTGCCAGTCAC/-|frameshift_variant;LAMA3|p.Y1046*|1|0.26|ENSG00000053747|chr18:23838822-23838825|GTAT/-|frameshift_variant	nc|ENSG00000053747|Q16787-3|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.29913330078125	2	490.299042	978.583531	0.94143	0.00046158	-1.0384	-0.00050914	-0.09699	-4.7554E-05	490.2983912260703	33.172	1.7371	30.477	30.103	31.84	-2.6954					75	34	3	0	0	0	0.44294	1	854	854		47.916	0	1	606920			50302	1200	41636	41665	54449	54449					0.09338226588261023
RPRGRDLRDR	10	Unmodified	_RPRGRDLRDR_					0	0	0			REV__nc|ENSG00000185340|Q99501|GAS2L1	REV__nc|ENSG00000185340|Q99501|GAS2L1	MULTI-MSMS	OvCa9_classI_Rep2	2	432.9153137207031	3	432.916709	1295.7283	-1.1041	-0.00047799	-2.4279	-0.0010511	-3.532	-0.0015291	432.9158567399814	54.785	2.7829	51.971	51.473	54.256	-2.8139					169	55	5	0	0	0	0.50873	2	3801	3771;3801		53.089	6.6322	1	2816800	+		50303	22495	41637	41666	54450;54451	54451					0.09226242997442569
RPRGRDLRDR	10	Unmodified	_RPRGRDLRDR_					0	0	0			REV__nc|ENSG00000185340|Q99501|GAS2L1	REV__nc|ENSG00000185340|Q99501|GAS2L1	MULTI-MSMS	OvCa9_classI_Rep4_	4	432.9159240722656	3	432.916709	1295.7283	-0.11601	-5.0221E-05	-3.6213	-0.0015677	-3.7373	-0.0016179	432.9152849032118	55.33	2.9994	52.035	51.546	54.545	-3.2944					163	58	5	0	0	0	0.65826	1	3511	3511		35.178	6.6015	1	3156400	+		50304	22495	41637	41666	54452	54452					0.09226242997442569
RPRGRRQVTR	10	Unmodified	_RPRGRRQVTR_					0	0	0			REV__ENST00000354371.6_1_2:237994566-237994623:+|nuORF	REV__ENST00000354371.6_1_2:237994566-237994623:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	427.92999267578125	3	427.928949	1280.76502	1.7119	0.00073257	0.31046	0.00013286	2.0224	0.00086543	427.9290217090034	65.493	1.4717	62.547	62.198	63.67	-2.9459					92	28	4	0	0	0	0.66944	1	2634	2634		45.908	29.987	1	349590	+		50305	24735	41638	41667	54453	54453					0.13586539614016147
RPRGRVYRGR	10	Unmodified	_RPRGRVYRGR_					0	0	0		ENSG00000100836|ENST00000216727|PABPN1;nc|ENSG00000258643|Q92843-2|BCL2L2;ENSG00000258643|ENST00000678502|BCL2L2-PABPN1	ENSG00000100836|ENST00000216727|PABPN1	ENSG00000100836|ENST00000216727|PABPN1	MULTI-SECPEP	OvCa9_classI_Rep3	3	424.910400390625	3	424.921794	1271.74355	1.7871	0.00075937	-3.0764	-0.0013072	-1.2894	-0.00054787	424.92062173288065	65.509	0.40536	62.563	62.3	62.705	-2.9459					12	7	2	0	0	0	0.026803	1	2603	2603		26.063	0	1	7051.8			50306	2110	41639	41668	54454	54454					0.11855154585282435
RPRGSHQSS	9	Unmodified	_RPRGSHQSS_					0	0	0			REV__ENST00000381637.3_1_19:55501058-55501561:+|nuORF	REV__ENST00000381637.3_1_19:55501058-55501561:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.3119812011719	2	506.257571	1010.50059	-2.3844	-0.0012071	-1.3799	-0.00069859	-3.7643	-0.0019057	506.25676350939773	35.268	0.34507	32.558	32.405	32.75	-2.7097					10	6	2	0	0	0	0.027462	1	1398	1398		34.173	0	1	15644	+		50307	25199	41640	41669	54455	54455					-0.004241349303811148
RPRGTKQTGP	10	Unmodified	_RPRGTKQTGP_					0	0	0			REV__ENST00000450723.5_1_7:91761137-91764086:-|nuORF	REV__ENST00000450723.5_1_7:91761137-91764086:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	549.31591796875	2	549.312346	1096.61014	-1.9654	-0.0010796	1.0227	0.0005618	-0.94264	-0.0005178	549.3130709406702	37.224	0.93481	34.514	34.238	35.173	-2.7097					44	18	3	0	0	0	0.75313	1	1651	1651		24.519	1.4767	1	132520	+		50308	25964	41641	41670	54456	54456					0.06569870688940682
RPRGYLRK	8	Unmodified	_RPRGYLRK_					0	0	0		tr|A0A553SSI9|A0A553SSI9_NIACISmallribosomalsubunitproteinuS14OS=NialliacirculansOX=1397GN=rpsNPE=3SV=1	tr|A0A553SSI9|A0A553SSI9_NIACISmallribosomalsubunitproteinuS14OS=NialliacirculansOX=1397GN=rpsNPE=3SV=1	tr|A0A553SSI9|A0A553SSI9_NIACISmallribosomalsubunitproteinuS14OS=NialliacirculansOX=1397GN=rpsNPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.2933349609375	2	523.322517	1044.63048	0.35772	0.0001872	-1.2801	-0.00066992	-0.92241	-0.00048272	523.3218327347762	34.54	0.44734	31.752	31.399	31.846	-2.7881					12	8	2	0	0	0	0.028476	1	1018	1018		38.806	13.356	1	8060.8			50309	34380	41642	41671	54457	54457					0.1099508613940543
RPRHKSLN	8	Unmodified	_RPRHKSLN_					0	0	0		DENND2A|p.P662Sfs*2|1|0.09|ENSG00000146966|chr7:140555690-140555691|-/C|frameshift_variant;nc|ENSG00000146966|Q9ULE3-2|DENND2A;DENND2A|p.L884Sfs*29|1|0.23|ENSG00000146966|chr7:140523322-140523323|-/AAGTGATCTGCCCACCTCGGCCTCCCAAAGTGCT|frameshift_variant;ENSG00000146966|ENST00000496613|DENND2A;DENND2A|p.R36T|1|0.1|ENSG00000146966|chr7:140602291-140602291|C/G|missense_variant	DENND2A|p.P662Sfs*2|1|0.09|ENSG00000146966|chr7:140555690-140555691|-/C|frameshift_variant	DENND2A|p.P662Sfs*2|1|0.09|ENSG00000146966|chr7:140555690-140555691|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	504.29608154296875	2	504.296499	1006.57845	-0.51106	-0.00025773	0.13731	6.9246E-05	-0.37375	-0.00018848	504.2965168618611	31.671	1.532	28.961	28.69	30.222	-2.7097					81	30	4	0	0	0	0.57734	2	993	969;993		68.787	19.345	1	812760			50310	727	41643	41672	54458;54459	54459					0.07541922725658878
RPRHPGKGP	9	Unmodified	_RPRHPGKGP_					0	0	0		ENST00000376113.6_2_2:127805706-127805868:-|nuORF	ENST00000376113.6_2_2:127805706-127805868:-|nuORF	ENST00000376113.6_2_2:127805706-127805868:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	501.28973388671875	2	501.291217	1000.56788	-0.80197	-0.00040202	-0.83348	-0.00041781	-1.6354	-0.00081983	501.2906816095173	135.63	4.8104	135.4	133.71	138.52	-0.22697					221	98	3	0	0	0	0.65476	1	13578	13578		25.45	0	1	70595			50311	11067	41644	41673	54460	54460					0.06761940071237404
RPRHQGVMV	9	Oxidation (M)	_RPRHQGVM(Oxidation (M))V_		RPRHQGVM(1)V		RPRHQGVM(56)V	0	0	1		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ACTB|p.K238Rfs*46|1|0.21|ENSG00000075624|chr7:5528372-5528372|C/-|frameshift_variant;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000436287.1_1_1:224052226-224052508:-|nuORF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OvCa9_classI_Rep2	2	548.2949829101562	2	548.295642	1094.57673	-1.4493	-0.00079464	0.96638	0.00052986	-0.48291	-0.00026478	548.2961982412694	34.285	4.3001	31.575	31.119	35.419	-2.7097					197	86	6	0	0	0	0.36502	2	1281	1281;1293		55.504	9.5523	1	2359300			50312	1537;5081	41645	41674	54461;54462	54461		56			0.03322545645391983
RPRHQGVMV	9	Oxidation (M)	_RPRHQGVM(Oxidation (M))V_		RPRHQGVM(1)V		RPRHQGVM(56)V	0	0	1		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ACTB|p.K238Rfs*46|1|0.21|ENSG00000075624|chr7:5528372-5528372|C/-|frameshift_variant;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000436287.1_1_1:224052226-224052508:-|nuORF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.29541015625	2	548.295642	1094.57673	0.52053	0.00028541	-1.6457	-0.00090234	-1.1252	-0.00061693	548.2950889669573	33.486	4.8857	30.698	30.11	34.996	-2.7881					278	97	6	0	0	0	0.36502	1	889	889		55.504	16.483	1	7055400			50313	1537;5081	41645	41674	54463	54463		56			0.03322545645391983
RPRHQGVMV	9	Unmodified	_RPRHQGVMV_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ACTB|p.K238Rfs*46|1|0.21|ENSG00000075624|chr7:5528372-5528372|C/-|frameshift_variant;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENST00000436287.1_1_1:224052226-224052508:-|nuORF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF;ENST00000488967.5_1_10:90706975-90712518:-|nuORF;ENST00000473016.1_1_2:74120109-74129648:+|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OvCa9_classI_Rep2	2	540.2985229492188	2	540.298185	1078.58182	-1.8908	-0.0010216	1.5096	0.00081564	-0.38116	-0.00020594	540.2989536670705	38.535	2.9688	35.825	35.469	38.438	-2.7097					158	59	5	0	0	0	0.46377	2	1887	1804;1887		45.952	16.802	1	1380400			50314	1537;5081	41645	41675	54464;54465	54465					0.04566849508000814
RPRHSVASL	9	Unmodified	_RPRHSVASL_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-MSMS	OvCa9_classI_Rep2	2	511.79656982421875	2	511.796332	1021.57811	-0.62141	-0.00031803	0.39226	0.00020076	-0.22915	-0.00011728	511.7964198016226	39.51	1.1416	36.8	36.459	37.601	-2.7097					55	22	3	0	0	0	0.40667	1	1942	1942		51.335	1.3109	1	203800			50315	1495	41646	41676	54466	54466					0.06818503005797538
RPRHSVASL	9	Unmodified	_RPRHSVASL_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-MATCH	OvCa99_classI_Rep5	1		2	511.796332	1021.57811	-0.90437	-0.00046286	5.9161	0.0030278	5.0117	0.002565	511.7994209850671	36.951	0.77592	36.951	36.662	37.438	0	0.075577	0.0052906	NaN	51.335	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59722			50316	1495	41646	41676							0.06818503005797538
RPRHYGDI	8	Unmodified	_RPRHYGDI_					0	0	0			REV__chr20:42199388-42248687|137|16.46|0.87|4.24|-|ENST00000373201|PTPRT,PTPRT	REV__chr20:42199388-42248687|137|16.46|0.87|4.24|-|ENST00000373201|PTPRT,PTPRT	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.3119812011719	2	507.267407	1012.52026	-2.2209	-0.0011266	-2.8799	-0.0014609	-5.1008	-0.0025875	507.26586087205874	35.09	0.44386	32.381	32.208	32.651	-2.7097					14	8	3	0	0	0	0.028476	1	1398	1398		30.504	2.6214	1	17589	+		50317	16017	41647	41677	54467	54467					0.014502410803629573
RPRIPRELLQH	11	Unmodified	_RPRIPRELLQH_					0	0	0		ENST00000375173.1_1_9:100364753-100365089:-|nuORF;ENSG00000136925|ENST00000341170|TSTD2	ENST00000375173.1_1_9:100364753-100365089:-|nuORF	ENST00000375173.1_1_9:100364753-100365089:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.6171875	3	472.28451	1413.8317	-4.4137	-0.0020845	3.0937	0.0014611	-1.32	-0.0006234	472.28623594983816	156.93	2.47	155.39	154.2	156.67	-1.545					140	72	3	0	0	0	0.72548	1	15481	15481		9.2118	0.41249	1	49755			50318	4532	41648	41678	54468	54468					0.14133730385265153
RPRIRWPWLL	10	Unmodified	_RPRIRWPWLL_					0	0	0			REV__ENST00000469599.6_1_Y:21867883-21868626:-|nuORF	REV__ENST00000469599.6_1_Y:21867883-21868626:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	465.26483154296875	3	464.950691	1391.83024	-0.67719	-0.00031486	2.1574	0.0010031	1.4802	0.00068823	465.2865706811331	95.181	0.2485	93.286	93.063	93.311	-1.8956					5	4	2	0	0	0	0.027268	1	6173	6173		12.207	1.6199	1	23213	+		50319	26245	41649	41679	54469	54469					0.15000141087148222
RPRIVWMME	9	Unmodified	_RPRIVWMME_					0	0	0			REV__nc|ENSG00000132530|Q6GPH4-6|XAF1	REV__nc|ENSG00000132530|Q6GPH4-6|XAF1	MULTI-MSMS	OvCa9_classI_Rep2	2	609.3171997070312	2	609.317728	1216.6209	0.65212	0.00039735	-1.897	-0.0011559	-1.2448	-0.0007585	609.3164322683887	65.674	1.8932	62.978	62.469	64.362	-2.6958					117	37	5	0	0	0	0.40667	1	5071	5071		51.335	0.14276	1	585240	+		50320	28852	41650	41680	54470	54470					0.0212581374732963
RPRIVWMME	9	Unmodified	_RPRIVWMME_					0	0	0			REV__nc|ENSG00000132530|Q6GPH4-6|XAF1	REV__nc|ENSG00000132530|Q6GPH4-6|XAF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	609.3177490234375	2	609.317728	1216.6209	0.12677	7.7244E-05	-1.2184	-0.00074238	-1.0916	-0.00066514	609.3168780071545	66.565	1.9139	63.075	62.612	64.526	-3.4902					83	38	4	0	0	0	0.37135	1	4835	4835		54.776	10.399	1	950700	+		50321	28852	41650	41680	54471	54471					0.0212581374732963
RPRKAFLL	8	Unmodified	_RPRKAFLL_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4;PDIA4|p.D110Kfs*24|1|0.12|ENSG00000155660|chr7:149019136-149019139|TATC/-|frameshift_variant;PDIA4|p.L65Ifs*5|1|0.06|ENSG00000155660|chr7:149021043-149021044|-/T|frameshift_variant;PDIA4|p.L65Wfs*12|1|0.06|ENSG00000155660|chr7:149021044-149021045|-/TGTGTAGTAAAAAATCCACCAC|frameshift_variant	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	OvCa9_classI_Rep2	2	500.8244934082031	2	500.824361	999.634169	-1.7989	-0.00090096	0.9357	0.00046862	-0.86325	-0.00043234	500.8247449295919	61.278	4.4126	58.518	58.094	62.506	-2.7593					209	84	4	0	0	0	0.61758	7	4606	4552;4582;4594;4606;4625;4631;4639		60.294	15.337	1	946070			50322	5795	41651	41681	54472;54473;54474;54475;54476;54477;54478	54475					0.1343375591327458
RPRKAFLL	8	Unmodified	_RPRKAFLL_					0	0	0		ENSG00000155660|ENST00000652332|PDIA4;PDIA4|p.D110Kfs*24|1|0.12|ENSG00000155660|chr7:149019136-149019139|TATC/-|frameshift_variant;PDIA4|p.L65Ifs*5|1|0.06|ENSG00000155660|chr7:149021043-149021044|-/T|frameshift_variant;PDIA4|p.L65Wfs*12|1|0.06|ENSG00000155660|chr7:149021044-149021045|-/TGTGTAGTAAAAAATCCACCAC|frameshift_variant	ENSG00000155660|ENST00000652332|PDIA4	ENSG00000155660|ENST00000652332|PDIA4	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.82489013671875	2	500.824361	999.634169	-0.70231	-0.00035174	0.048171	2.4125E-05	-0.65414	-0.00032761	500.82426175027206	62.48	3.824	59.023	58.382	62.206	-3.4577					194	78	4	0	0	0	0.61758	2	4382	4369;4382		60.294	15.763	1	1001200			50323	5795	41651	41681	54479;54480	54480					0.1343375591327458
RPRKGGPEF	9	Unmodified	_RPRKGGPEF_					0	0	0		ENST00000564526.1_1_16:85009951-85010841:-|nuORF;ENSG00000153786|ENST00000313732|ZDHHC7;nc|ENSG00000153786|Q9NXF8-2|ZDHHC7	ENST00000564526.1_1_16:85009951-85010841:-|nuORF	ENST00000564526.1_1_16:85009951-85010841:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.2900390625	2	522.290882	1042.56721	0.46975	0.00024535	-0.9009	-0.00047053	-0.43115	-0.00022519	522.2903512048665	35.195	1.2016	32.346	31.987	33.189	-2.849					57	23	3	0	0	0	0.33652	1	1112	1112		58.782	12.81	1	177480			50324	5691	41652	41682	54481	54481					0.04763100631521411
RPRKIKEI	8	Unmodified	_RPRKIKEI_					0	0	0			REV__ENSG00000131467|ENST00000590720|PSME3	REV__ENSG00000131467|ENST00000590720|PSME3	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3407592773438	2	520.340375	1038.6662	-0.11114	-5.783E-05	-0.1677	-8.7261E-05	-0.27884	-0.00014509	520.3401542748645	39.812	1.4362	37.102	36.805	38.241	-2.7097					67	28	4	0	0	0	0.73288	2	1971	1971;1978		35.201	3.2459	1	306910	+		50325	19016	41653	41683	54482;54483	54482					0.14841123596420402
RPRKKSGGSGE	11	Unmodified	_RPRKKSGGSGE_					0	0	0		nc|ENSG00000143390|P48382-2|RFX5;ENSG00000143390|ENST00000452671|RFX5	nc|ENSG00000143390|P48382-2|RFX5	nc|ENSG00000143390|P48382-2|RFX5	MULTI-MSMS	OvCa99_classI_Rep5	1	579.8197631835938	2	579.820535	1157.62652	-1.2342	-0.00071561	0.63653	0.00036907	-0.59766	-0.00034654	579.8209089673144	34.179	0.99331	34.179	33.824	34.818	0					54	20	5	0	0	0	0.68757	1	1618	1618		33.922	3.418	1	2274700			50326	5049	41654	41684	54484	54484					0.05400951855040148
RPRKKSGGSGE	11	Unmodified	_RPRKKSGGSGE_					0	0	0		nc|ENSG00000143390|P48382-2|RFX5;ENSG00000143390|ENST00000452671|RFX5	nc|ENSG00000143390|P48382-2|RFX5	nc|ENSG00000143390|P48382-2|RFX5	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	579.820535	1157.62652	0.3563	0.00020659	1.2813	0.0007429	1.6376	0.00094949	579.8209941520095	36.894	0.79725	34.001	33.794	34.591	-2.8925	-0.08914	0.00063501	NaN	33.922	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38215			50327	5049	41654	41684							0.05400951855040148
RPRKLYKH	8	Unmodified	_RPRKLYKH_					0	0	0		ENSG00000148925|ENST00000278174|BTBD10	ENSG00000148925|ENST00000278174|BTBD10	ENSG00000148925|ENST00000278174|BTBD10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.7874755859375	2	549.338167	1096.66178	0.72821	0.00040003	-2.4098	-0.0013238	-1.6816	-0.00092378	549.3366868550357	35.864	0.89918	33.015	32.79	33.689	-2.849					32	17	3	0	0	0	0.028476	1	1246	1246		25.45	8.0852	1	102720			50328	5432	41655	41685	54485	54485					0.11731659173506159
RPRKPRRP	8	Unmodified	_RPRKPRRP_					0	0	0			REV__nc|ENSG00000136944|O60663-2|LMX1B	REV__nc|ENSG00000136944|O60663-2|LMX1B	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8433227539062	2	531.841408	1061.66826	-0.51734	-0.00027514	2.4429	0.0012992	1.9255	0.0010241	531.8426795493502	87.347	2.6082	85.17	84.633	87.241	-2.1768					142	51	5	0	0	0	0.67745	1	5243	5243		47.916	7.1374	1	1464300	+		50329	19425	41656	41686	54486	54486					0.13989597124896136
RPRKRTDK	8	Unmodified	_RPRKRTDK_					0	0	0			REV__SYMPK|p.I588Mfs*65|1|0.12|ENSG00000125755|chr19:45829191-45829192|-/TGTGTACACACTGCAGGCAGACTCAGGC|frameshift_variant	REV__SYMPK|p.I588Mfs*65|1|0.12|ENSG00000125755|chr19:45829191-45829192|-/TGTGTACACACTGCAGGCAGACTCAGGC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	528.8201293945312	2	528.822881	1055.63121	-0.71785	-0.00037962	-3.3283	-0.0017601	-4.0462	-0.0021397	528.8209765807109	73.376	1.4125	70.976	70.378	71.79	-2.3999					70	26	4	0	0	0	0.65062	1	5980	5980		53.351	16.905	1	825140	+		50330	18742	41657	41687	54487	54487					0.10561880788463895
RPRKRTDK	8	Unmodified	_RPRKRTDK_					0	0	0			REV__SYMPK|p.I588Mfs*65|1|0.12|ENSG00000125755|chr19:45829191-45829192|-/TGTGTACACACTGCAGGCAGACTCAGGC|frameshift_variant	REV__SYMPK|p.I588Mfs*65|1|0.12|ENSG00000125755|chr19:45829191-45829192|-/TGTGTACACACTGCAGGCAGACTCAGGC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.8220825195312	2	528.822881	1055.63121	-0.9658	-0.00051074	-3.2519	-0.0017197	-4.2177	-0.0022304	528.8210701493393	74.689	0.96491	71.458	71.047	72.012	-3.2308					47	19	3	0	0	0	0.74229	1	5852	5852		30.504	0	1	974760	+		50331	18742	41657	41687	54488	54488					0.10561880788463895
RPRKTGHAL	9	Unmodified	_RPRKTGHAL_					0	0	0		ENSG00000171617|ENST00000302351|ENC1;nc|ENSG00000171617|O14682-2|ENC1;ENC1|p.A288T|1|0.18|ENSG00000171617|chr5:74635624-74635624|C/T|missense_variant	ENSG00000171617|ENST00000302351|ENC1	ENSG00000171617|ENST00000302351|ENC1	MULTI-MSMS	OvCa9_classI_Rep2	2	518.3131103515625	2	518.312149	1034.60975	1.4676	0.00076068	-1.7772	-0.00092116	-0.30962	-0.00016048	518.3111282490884	29.379	1.2492	26.669	26.407	27.656	-2.7097					55	25	3	0	0	0	0.69123	1	708	708		20.947	0.95016	1	95242			50332	7220	41658	41688	54489	54489					0.09382495759746234
RPRKTSSL	8	Unmodified	_RPRKTSSL_					0	0	0		ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	MULTI-MSMS	OvCa9_classI_Rep2	2	472.78485107421875	2	472.785433	943.556313	1.3192	0.0006237	-1.3249	-0.0006264	-0.0057136	-2.7013E-06	472.78465285146206	29.187	1.0318	26.478	26.18	27.212	-2.7097					38	21	3	0	0	0	0.74229	1	692	692		30.504	12.179	1	56287			50333	2318	41659	41689	54490	54490					0.08227698257235261
RPRKVEALV	9	Unmodified	_RPRKVEALV_					0	0	0		ENST00000609504.5_2_20:328129-329931:+|nuORF;ENST00000382285.6_1_20:328123-329934:+|nuORF;ENST00000609179.5_1_20:327490-329931:+|nuORF	ENST00000609504.5_2_20:328129-329931:+|nuORF	ENST00000609504.5_2_20:328129-329931:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	534.337158203125	2	534.337833	1066.66111	-1.8836	-0.0010065	1.4667	0.00078373	-0.4169	-0.00022277	534.3385363027232	49.37	2.527	46.609	45.829	48.356	-2.7603					129	50	4	0	0	0	0.48324	7	3142	3096;3113;3129;3142;3153;3166;3174		44.117	8.2236	1	911830			50334	14305	41660	41690	54491;54492;54493;54494;54495;54496;54497	54494					0.13044819733772783
RPRKVEALV	9	Unmodified	_RPRKVEALV_					0	0	0		ENST00000609504.5_2_20:328129-329931:+|nuORF;ENST00000382285.6_1_20:328123-329934:+|nuORF;ENST00000609179.5_1_20:327490-329931:+|nuORF	ENST00000609504.5_2_20:328129-329931:+|nuORF	ENST00000609504.5_2_20:328129-329931:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.3384399414062	2	534.337833	1066.66111	-2.8968	-0.0015479	2.273	0.0012145	-0.62378	-0.00033331	534.3389697758937	49.731	2.2182	46.589	45.937	48.155	-3.1416					92	42	3	0	0	0	0.50149	2	2860	2811;2860		42.396	3.1433	1	787730			50335	14305	41660	41690	54498;54499	54499					0.13044819733772783
RPRKVLLE	8	Unmodified	_RPRKVLLE_					0	0	0		ENST00000260662.2_1_2:25022600-25022663:+|nuORF	ENST00000260662.2_1_2:25022600-25022663:+|nuORF	ENST00000260662.2_1_2:25022600-25022663:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	505.8260192871094	2	505.827101	1009.63965	-0.85619	-0.00043308	0.13586	6.872E-05	-0.72033	-0.00036436	505.82718858176185	76.971	2.6698	75.182	74.741	77.411	-1.7894					101	51	4	0	0	0	0.59148	1	6400	6400		65.803	0	1	1152500			50336	9852	41661	41691	54500	54500					0.13521434705080537
RPRKVLLE	8	Unmodified	_RPRKVLLE_					0	0	0		ENST00000260662.2_1_2:25022600-25022663:+|nuORF	ENST00000260662.2_1_2:25022600-25022663:+|nuORF	ENST00000260662.2_1_2:25022600-25022663:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.82830810546875	2	505.827101	1009.63965	-0.3073	-0.00015544	-0.2138	-0.00010814	-0.5211	-0.00026358	505.82687914944904	78.368	2.4922	75.551	75.067	77.559	-2.8165					106	51	4	0	0	0	0.65062	1	6339	6339		53.351	5.4358	1	1172000			50337	9852	41661	41691	54501	54501					0.13521434705080537
RPRKVSAL	8	Unmodified	_RPRKVSAL_					0	0	0			REV__ENST00000557803.5_1_14:102802004-102808513:+|nuORF	REV__ENST00000557803.5_1_14:102802004-102808513:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	463.7984924316406	2	463.798343	925.582134	0.21037	9.7568E-05	-1.0086	-0.0004678	-0.79827	-0.00037024	463.7978667804196	70.561	4.2201	67.99	67.714	71.934	-2.5707					173	80	4	0	0	0	0.62934	1	5687	5687		57.811	0	1	2590100	+		50338	16553	41662	41692	54502	54502					0.11636592499519338
RPRKVSAL	8	Unmodified	_RPRKVSAL_					0	0	0			REV__ENST00000557803.5_1_14:102802004-102808513:+|nuORF	REV__ENST00000557803.5_1_14:102802004-102808513:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	463.79840087890625	2	463.798343	925.582134	0.29403	0.00013637	-0.86487	-0.00040112	-0.57084	-0.00026475	463.7979721487958	70.79	6.0908	68.07	67.699	73.79	-2.7196					279	121	5	0	0	0	0.7224	1	3311	3311		38.806	1.7777	1	3593600	+		50339	16553	41662	41692	54503	54503					0.11636592499519338
RPRKWTPDPGV	11	Unmodified	_RPRKWTPDPGV_					0	0	0		ENST00000355703.3_1_11:65383350-65383554:+|nuORF	ENST00000355703.3_1_11:65383350-65383554:+|nuORF	ENST00000355703.3_1_11:65383350-65383554:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	436.2615966796875	3	436.910561	1307.70985	1.0363	0.00045277	-0.78177	-0.00034156	0.25452	0.0001112	436.9099013082963	64.979	0.57085	62.254	61.97	62.541	-2.7245					16	10	2	0	0	0	0.025767	1	4943	4943		45.022	23.99	1	8565.4			50340	10682	41663	41693	54504	54504					0.06830688302875387
RPRLALPRV	9	Unmodified	_RPRLALPRV_					0	0	0			REV__ENST00000535678.1_1_2:223725777-223773458:+|nuORF	REV__ENST00000535678.1_1_2:223725777-223773458:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	539.3536376953125	2	539.353817	1076.69308	2.2939	0.0012372	-2.3996	-0.0012943	-0.10574	-5.7029E-05	539.3523735364151	63.128	1.3441	60.094	59.756	61.1	-3.0339					58	26	3	0	0	0	0.70177	1	2355	2355		17.365	4.4058	1	102560	+		50341	24785	41664	41694	54505	54505					0.15780232207589506
RPRLGLRSL	9	Unmodified	_RPRLGLRSL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	OvCa9_classI_Rep3	3	534.3436279296875	2	534.343449	1066.67235	1.9733	0.0010544	-1.9799	-0.0010579	-0.0065619	-3.5063E-06	534.3423036869325	64.763	1.4145	61.77	61.395	62.809	-2.9933					70	27	3	0	0	0	0.61365	1	2515	2515		30.318	4.7437	1	193540			50342	863	41665	41695	54506	54506					0.1416764182793031
RPRLGRLLS	9	Unmodified	_RPRLGRLLS_					0	0	0			REV__ENST00000233813.4_1_2:217537579-217537897:-|nuORF	REV__ENST00000233813.4_1_2:217537579-217537897:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	534.3433227539062	2	534.343449	1066.67235	1.9733	0.0010544	-1.9799	-0.0010579	-0.0065619	-3.5063E-06	534.3423036869325	64.763	1.4145	61.77	61.395	62.809	-2.9933					70	27	3	0	0	0	0.53483	2	2532	2532;2538		39.253	6.4404	1	193540	+		50343	23798	41666	41696	54507;54508	54507					0.14167641827953048
RPRLHSPAVKG	11	Unmodified	_RPRLHSPAVKG_					0	0	0		chr22:22298211-22303224|428|98.47|0.0|23.23|+|1|None,BMS1P20|1	chr22:22298211-22303224|428|98.47|0.0|23.23|+|1|None,BMS1P20|1	chr22:22298211-22303224|428|98.47|0.0|23.23|+|1|None,BMS1P20|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	609.3171997070312	2	609.364913	1216.71527	0.61563	0.00037515	3.5509	0.0021638	4.1666	0.002539	609.366996544139	65.537	0.50116	62.841	62.62	63.121	-2.6958					14	9	2	0	0	0	0.025344	1	5071	5071		49.536	0	1	17457			50344	463	41667	41697	54509	54509					0.11558411885334863
RPRLKGIE	8	Unmodified	_RPRLKGIE_					0	0	0			REV__ENST00000449707.5_1_2:219523523-219524103:-|nuORF	REV__ENST00000449707.5_1_2:219523523-219524103:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	484.8030090332031	2	484.803626	967.592698	0.80858	0.000392	-0.69069	-0.00033485	0.11789	5.7152E-05	484.80311931217824	65.561	1.2695	62.615	62.35	63.62	-2.9459					49	24	3	0	0	0	0.67745	1	2629	2629		47.916	0	1	183720	+		50345	25952	41668	41698	54510	54510					0.10760575153949503
RPRLKGIEL	9	Unmodified	_RPRLKGIEL_					0	0	0			REV__ENST00000449707.5_1_2:219523523-219524103:-|nuORF	REV__ENST00000449707.5_1_2:219523523-219524103:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	541.3456420898438	2	541.345658	1080.67676	-0.18719	-0.00010134	-1.1969	-0.00064794	-1.3841	-0.00074928	541.345222203672	81.441	1.5457	79.792	79.415	80.961	-1.6485					147	29	7	0	0	0	0.50149	1	6921	6921		42.396	3.1433	1	3232100	+		50346	25952	41669	41699	54511	54511					0.139651062508392
RPRLLGSA	8	Unmodified	_RPRLLGSA_					0	0	0		ENST00000523828.5_1_17:78389306-78389548:+|nuORF	ENST00000523828.5_1_17:78389306-78389548:+|nuORF	ENST00000523828.5_1_17:78389306-78389548:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	435.26910400390625	2	435.269419	868.524284	0.29131	0.0001268	-0.70002	-0.0003047	-0.40872	-0.0001779	435.26897806617785	40.282	1.3859	37.572	37.052	38.438	-2.7097					82	27	6	0	0	0	0.75723	1	2021	2021		23.042	0	1	329020			50347	13155	41670	41700	54512	54512					0.08476330574092117
RPRLLGSA	8	Unmodified	_RPRLLGSA_					0	0	0		ENST00000523828.5_1_17:78389306-78389548:+|nuORF	ENST00000523828.5_1_17:78389306-78389548:+|nuORF	ENST00000523828.5_1_17:78389306-78389548:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	435.2692565917969	2	435.269419	868.524284	-0.1815	-7.9E-05	-1.073	-0.00046705	-1.2545	-0.00054605	435.26868248288156	40.381	1.8146	37.427	37.012	38.827	-2.9541					94	34	4	0	0	0	0.74229	1	1747	1747		30.504	0	1	1438300			50348	13155	41670	41700	54513	54513					0.08476330574092117
RPRLLGSGG	9	Unmodified	_RPRLLGSGG_					0	0	0		nc|ENSG00000109911|Q96EB1-2|ELP4	nc|ENSG00000109911|Q96EB1-2|ELP4	nc|ENSG00000109911|Q96EB1-2|ELP4	MULTI-MSMS	OvCa9_classI_Rep3	3	456.7723083496094	2	456.772326	911.530098	-2.6183	-0.001196	2.5573	0.0011681	-0.061068	-2.7894E-05	456.77340273142477	142.71	1.7302	141.7	141.28	143.01	-1.0106					71	34	3	0	0	0	0.55588	1	11837	11837		37.159	0	1	453300			50349	14953	41671	41701	54514	54514					0.07079429085763422
RPRLLPTP	8	Unmodified	_RPRLLPTP_					0	0	0			REV__ENST00000509549.5_1_22:19341546-19435194:-|nuORF	REV__ENST00000509549.5_1_22:19341546-19435194:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.30157470703125	2	475.300719	948.586885	-0.28648	-0.00013616	-0.17915	-8.5152E-05	-0.46563	-0.00022132	475.3005730301736	66.287	2.253	62.796	62.369	64.622	-3.4902					129	45	5	0	0	0	0.6962	1	4807	4807		44.117	1.7207	1	3255100	+		50350	26928	41672	41702	54515	54515					0.11053476642268834
RPRLLPTPL	9	Unmodified	_RPRLLPTPL_					0	0	0			REV__ENST00000509549.5_1_22:19341546-19435194:-|nuORF	REV__ENST00000509549.5_1_22:19341546-19435194:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8427124023438	2	531.842751	1061.67095	-1.3008	-0.00069181	0.36592	0.00019461	-0.93486	-0.0004972	531.8428658460189	86.158	2.0283	84.667	84.295	86.323	-1.4907					118	39	5	0	0	0	0.2422	2	7506	7506;7513		69.628	21.97	1	1213100	+		50351	26928	41673	41703	54516;54517	54516					0.14258007739181267
RPRLLPTPL	9	Unmodified	_RPRLLPTPL_					0	0	0			REV__ENST00000509549.5_1_22:19341546-19435194:-|nuORF	REV__ENST00000509549.5_1_22:19341546-19435194:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8434448242188	2	531.842751	1061.67095	-0.51734	-0.00027514	-0.0817	-4.3452E-05	-0.59904	-0.00031859	531.8426795493502	87.347	2.6082	85.17	84.633	87.241	-2.1768					142	51	5	0	0	0	0.44568	3	5281	5267;5281;5287		47.657	6.8792	1	1464300	+		50352	26928	41673	41703	54518;54519;54520	54519					0.14258007739181267
RPRLLPTPL	9	Unmodified	_RPRLLPTPL_					0	0	0			REV__ENST00000509549.5_1_22:19341546-19435194:-|nuORF	REV__ENST00000509549.5_1_22:19341546-19435194:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8433227539062	2	531.842751	1061.67095	-3.0779	-0.001637	0.77801	0.00041378	-2.2999	-0.0012232	531.8431178075783	87.834	2.1996	85.207	84.698	86.898	-2.6269					116	43	4	0	0	0	0.38969	2	7488	7464;7488		52.937	12.159	1	1399000	+		50353	26928	41673	41703	54521;54522	54522					0.14258007739181267
RPRLPLPM	8	Unmodified	_RPRLPLPM_					0	0	0			REV__ENST00000556152.1_1_14:24033689-24033869:-|nuORF	REV__ENST00000556152.1_1_14:24033689-24033869:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.2990417480469	2	490.297122	978.579691	0.94144	0.00046158	2.8774	0.0014108	3.8188	0.0018724	490.2983912260703	33.172	1.7371	30.477	30.103	31.84	-2.6954					75	34	3	0	0	0	0.69415	1	891	891		44.531	3.9584	1	606920	+		50354	27554	41674	41704	54523	54523					0.08954420770191973
RPRLPTPL	8	Unmodified	_RPRLPTPL_					0	0	0			REV__ENST00000335312.7_1_19:3632952-3633126:-|nuORF	REV__ENST00000335312.7_1_19:3632952-3633126:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	475.29937744140625	2	475.300719	948.586885	0.83712	0.00039788	-1.305	-0.00062029	-0.46792	-0.0002224	475.30006565058653	65.392	2.5484	62.696	62.21	64.758	-2.6958					145	50	5	0	0	0	0.67745	4	5025	5003;5008;5014;5025		47.916	0	1	2264200	+		50355	24579	41675	41705	54524;54525;54526;54527	54527					0.11053476642268834
RPRLQHSFSF	10	Unmodified	_RPRLQHSFSF_					0	0	0		ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	425.5635070800781	3	425.563273	1273.66799	-0.49907	-0.00021239	0.24547	0.00010446	-0.2536	-0.00010792	425.5633997861795	69.334	3.5142	66.713	66.068	69.582	-2.6203					206	68	5	0	0	0	0.47142	1	5520	5520		58.23	13.853	1	1667000			50356	8272	41676	41706	54528	54528					0.0421013261434382
RPRLQHSFSF	10	Unmodified	_RPRLQHSFSF_					0	0	0		ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	425.56396484375	3	425.563273	1273.66799	1.0852	0.00046181	-1.3177	-0.00056076	-0.23251	-9.8946E-05	425.56271987767565	69.963	3.6895	67.243	66.706	70.396	-2.7196					254	73	5	0	0	0	0.50873	10	3168	3135;3146;3150;3157;3168;3192;3210;3216;3229;3236		53.089	8.4239	1	1255000			50357	8272	41676	41706	54529;54530;54531;54532;54533;54534;54535;54536;54537;54538	54533					0.0421013261434382
RPRLQHSFSF	10	Unmodified	_RPRLQHSFSF_					0	0	0		ENST00000555997.1_1_14:69256252-69257717:-|nuORF;ENSG00000185650|ENST00000439696|ZFP36L1	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	ENST00000555997.1_1_14:69256252-69257717:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	425.56427001953125	3	425.563273	1273.66799	-0.64889	-0.00027614	0.36902	0.00015704	-0.27988	-0.0001191	425.5634355212521	71.059	2.9087	67.603	67.251	70.16	-3.4563					178	59	6	0	0	0	0.63752	1	5426	5426		37.508	0	1	1431800			50358	8272	41676	41706	54539	54539					0.0421013261434382
RPRLRACTR	9	Unmodified	_RPRLRACTR_					0	0	0		ENST00000508125.1_1_5:122737108-122737255:-|nuORF	ENST00000508125.1_1_5:122737108-122737255:-|nuORF	ENST00000508125.1_1_5:122737108-122737255:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	564.8309326171875	2	564.830183	1127.64581	-0.78673	-0.00044437	-3.1909	-0.0018023	-3.9777	-0.0022467	564.8281356979684	55.822	1.7837	53.018	52.731	54.515	-2.804					83	35	4	0	0	0	0.42576	1	3894	3894		49.536	1.5765	1	335610			50359	12939	41677	41707	54540	54540					0.08709629664940621
RPRLRAMP	8	Unmodified	_RPRLRAMP_					0	0	0		ENST00000525070.1_1_11:409841-409994:-|nuORF;ENST00000530683.5_1_11:407853-409994:-|nuORF;ENST00000528698.5_1_11:407426-409994:-|nuORF	ENST00000525070.1_1_11:409841-409994:-|nuORF	ENST00000525070.1_1_11:409841-409994:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.83062744140625	2	498.79782	995.581088	-0.082229	-4.1016E-05	-4.263	-0.0021264	-4.3452	-0.0021674	498.79522617159904	90.44	0.56174	87.865	87.65	88.212	-2.575					16	10	2	0	0	0	0.028476	1	7826	7826		28.254	0	1	26045			50360	13180	41678	41708	54541	54541					0.08312054858947704
RPRLRGKE	8	Unmodified	_RPRLRGKE_					0	0	0		chr16:1309773-1315654|126|12.64|0.41|4.94|+|1|UBE2I,UBE2I|1	chr16:1309773-1315654|126|12.64|0.41|4.94|+|1|UBE2I,UBE2I|1	chr16:1309773-1315654|126|12.64|0.41|4.94|+|1|UBE2I,UBE2I|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.3124694824219	2	506.312149	1010.60975	0.46307	0.00023446	-0.8186	-0.00041446	-0.35553	-0.00018001	506.3116358736659	34.315	1.6506	31.527	31.2	32.85	-2.7881					67	32	4	0	0	0	0.66057	2	998	987;998		51.335	3.6781	1	624090			50361	367	41679	41709	54542;54543	54543					0.1048649575974423
RPRLSAVVIG	10	Unmodified	_RPRLSAVVIG_					0	0	0			REV__ENST00000599167.5_1_19:50000650-50000725:+|nuORF	REV__ENST00000599167.5_1_19:50000650-50000725:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.3389892578125	2	534.337833	1066.66111	-2.8968	-0.0015479	2.273	0.0012145	-0.62378	-0.00033331	534.3389697758937	49.731	2.2182	46.589	45.937	48.155	-3.1416					92	42	3	0	0	0	0.64697	1	2823	2823		36.447	1.2947	1	787730	+		50362	28018	41680	41710	54544	54544					0.13044819733772783
RPRLTGPG	8	Unmodified	_RPRLTGPG_					0	0	0			REV__ENST00000490223.1_1_3:23958684-23958756:+|nuORF	REV__ENST00000490223.1_1_3:23958684-23958756:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	427.2537841796875	2	427.253769	852.492984	-1.369	-0.00058491	1.6643	0.00071106	0.29526	0.00012615	427.254318949799	38.75	1.1373	36.041	35.816	36.953	-2.7097					54	22	3	0	0	0	0.73205	1	1853	1853		35.618	3.6634	1	356560	+		50363	26652	41681	41711	54545	54545					0.0608375753998871
RPRLTGPG	8	Unmodified	_RPRLTGPG_					0	0	0			REV__ENST00000490223.1_1_3:23958684-23958756:+|nuORF	REV__ENST00000490223.1_1_3:23958684-23958756:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	427.2539978027344	2	427.253769	852.492984	0.47927	0.00020477	-0.70424	-0.00030089	-0.22497	-9.6119E-05	427.25343840755255	38.849	1.9995	35.923	35.502	37.502	-2.9264					103	39	4	0	0	0	0.61436	1	1539	1539		60.972	2.19	1	1592600	+		50364	26652	41681	41711	54546	54546					0.0608375753998871
RPRLTSNEKL	10	Unmodified	_RPRLTSNEKL_					0	0	0		ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENST00000531290.5_1_11:118889791-118894106:+|nuORF;ENSG00000196655|ENST00000533632|TRAPPC4	ENST00000447216.2_1_11:118889505-118891019:+|nuORF	ENST00000447216.2_1_11:118889505-118891019:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	607.3536376953125	2	607.354211	1212.69387	-0.61354	-0.00037263	0.40041	0.00024319	-0.21312	-0.00012944	607.3543577015784	45.588	1.5455	42.878	42.497	44.043	-2.7097					76	30	4	0	0	0	0.53396	1	2662	2662		30.318	0	1	376690			50365	8639	41682	41712	54547	54547					0.09602982065962351
RPRLTSNEKL	10	Unmodified	_RPRLTSNEKL_					0	0	0		ENST00000447216.2_1_11:118889505-118891019:+|nuORF;ENST00000531290.5_1_11:118889791-118894106:+|nuORF;ENSG00000196655|ENST00000533632|TRAPPC4	ENST00000447216.2_1_11:118889505-118891019:+|nuORF	ENST00000447216.2_1_11:118889505-118891019:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	405.2392883300781	3	405.238566	1212.69387	0.69282	0.00028076	-1.0074	-0.00040826	-0.31463	-0.0001275	405.23816410818705	45.869	1.9179	42.797	42.405	44.323	-3.0717					124	36	5	0	0	0	0.62712	1	2428	2428		38.754	0	1	2187400			50366	8639	41682	41712	54548	54548					0.09602982065962351
RPRLVKDLD	9	Unmodified	_RPRLVKDLD_					0	0	0			REV__ENST00000595692.1_1_19:7679981-7682940:+|nuORF	REV__ENST00000595692.1_1_19:7679981-7682940:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	556.3324584960938	2	556.332747	1110.65094	0.19549	0.00010876	-0.020928	-1.1643E-05	0.17456	9.7113E-05	556.3324974852751	69.386	1.1434	66.572	66.261	67.405	-2.8143					67	22	4	0	0	0	0.26076	1	3092	3092		67.494	7.3754	1	473980	+		50367	16998	41683	41713	54549	54549					0.10004212008561808
RPRLVKDLD	9	Unmodified	_RPRLVKDLD_					0	0	0			REV__ENST00000595692.1_1_19:7679981-7682940:+|nuORF	REV__ENST00000595692.1_1_19:7679981-7682940:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	556.332747	1110.65094	0.028672	1.5951E-05	-0.13092	-7.2835E-05	-0.10225	-5.6884E-05	556.3324793161054	69.269	1.0958	66.649	66.266	67.362	-2.6203	-0.07693	-0.00015503	NaN	67.494	73	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	321010	+		50368	16998	41683	41713							0.10004212008561808
RPRNALLLL	9	Unmodified	_RPRNALLLL_					0	0	0		ENSG00000181523|ENST00000326317|SGSH;ENST00000571075.1_1_17:78190791-78194112:-|nuORF;ENST00000571051.5_1_17:78187969-78194112:-|nuORF;ENST00000575282.5_1_17:78187814-78194112:-|nuORF	ENSG00000181523|ENST00000326317|SGSH	ENSG00000181523|ENST00000326317|SGSH	MULTI-MSMS	OvCa9_classI_Rep2	2	533.3472290039062	2	533.3482	1064.68185	-0.61869	-0.00032998	-0.032112	-1.7127E-05	-0.65081	-0.00034711	533.348160054999	92.553	1.6565	91.385	91.024	92.68	-1.168					102	31	5	0	0	0	0.27546	3	8236	8236;8248;8298		65.803	0	1	1110800			50369	7935	41684	41714	54550;54551;54552	54550					0.15209410113470767
RPRNALLLL	9	Unmodified	_RPRNALLLL_					0	0	0		ENSG00000181523|ENST00000326317|SGSH;ENST00000571075.1_1_17:78190791-78194112:-|nuORF;ENST00000571051.5_1_17:78187969-78194112:-|nuORF;ENST00000575282.5_1_17:78187814-78194112:-|nuORF	ENSG00000181523|ENST00000326317|SGSH	ENSG00000181523|ENST00000326317|SGSH	MULTI-MSMS	OvCa9_classI_Rep3	3	533.3488159179688	2	533.3482	1064.68185	-0.32178	-0.00017162	-0.064184	-3.4232E-05	-0.38596	-0.00020585	533.3481150232365	93.925	1.7195	91.964	91.577	93.296	-1.9617					119	33	5	0	0	0	0.14739	6	6065	6020;6030;6053;6059;6065;6078		85.359	5.4797	1	1484200			50370	7935	41684	41714	54553;54554;54555;54556;54557;54558	54557					0.15209410113470767
RPRNALLLL	9	Unmodified	_RPRNALLLL_					0	0	0		ENSG00000181523|ENST00000326317|SGSH;ENST00000571075.1_1_17:78190791-78194112:-|nuORF;ENST00000571051.5_1_17:78187969-78194112:-|nuORF;ENST00000575282.5_1_17:78187814-78194112:-|nuORF	ENSG00000181523|ENST00000326317|SGSH	ENSG00000181523|ENST00000326317|SGSH	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.3492431640625	2	533.3482	1064.68185	-1.4271	-0.00076117	0.86138	0.00045942	-0.56576	-0.00030175	533.3485712368183	94.648	1.5521	92.18	91.811	93.363	-2.4685					99	30	4	0	0	0	0.14739	4	8306	8294;8306;8318;8344		85.359	5.49	1	1202000			50371	7935	41684	41714	54559;54560;54561;54562	54560					0.15209410113470767
RPRNCMEAQY	10	Unmodified	_RPRNCMEAQY_					0	0	0		ENST00000579456.5_1_17:57763057-57768004:+|nuORF	ENST00000579456.5_1_17:57763057-57768004:+|nuORF	ENST00000579456.5_1_17:57763057-57768004:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	634.2872314453125	2	634.287156	1266.55976	-0.091398	-5.7973E-05	1.7258	0.0010947	1.6344	0.0010367	634.2881774569281	131.01	0.8949	130.78	130.5	131.4	-0.22697					40	17	3	0	0	0	0.73378	1	12907	12907		26.693	0.62953	1	51669			50372	13979	41685	41715	54563	54563					-0.0628574302272682
RPRNPAGRTGL	11	Unmodified	_RPRNPAGRTGL_					0	0	0		ENSG00000170502|ENST00000302174|NUDT9;nc|ENSG00000170502|Q9BW91-2|NUDT9	ENSG00000170502|ENST00000302174|NUDT9	ENSG00000170502|ENST00000302174|NUDT9	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8435668945312	2	597.844345	1193.67414	0.16357	9.7791E-05	-1.0618	-0.00063481	-0.89827	-0.00053702	597.8439550287295	39.708	1.7287	36.754	36.268	37.997	-2.9541					97	33	4	0	0	0	0.43993	2	1658	1646;1658		58.23	9.977	1	512190			50373	7111	41686	41716	54564;54565	54565					0.08504650845884498
RPRNVVLLI	9	Unmodified	_RPRNVVLLI_					0	0	0			REV__AREG|p.M69Ifs*39|1|0.03|ENSG00000109321|chr4:74446679-74446679|G/-|frameshift_variant	REV__AREG|p.M69Ifs*39|1|0.03|ENSG00000109321|chr4:74446679-74446679|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	539.78759765625	2	540.356025	1078.6975	-0.88595	-0.00047873	0.26774	0.00014467	-0.61821	-0.00033406	540.3560174220611	95.079	1.9809	94.051	93.726	95.707	-1.0281					85	39	4	0	0	0	0.027441	1	8536	8536		55.504	7.5886	1	360060	+		50374	15650	41687	41717	54566	54566					0.16129696630514445
RPRPAASRP	9	Unmodified	_RPRPAASRP_					0	0	0		ENSG00000130758|ENST00000253055|MAP3K10	ENSG00000130758|ENST00000253055|MAP3K10	ENSG00000130758|ENST00000253055|MAP3K10	MULTI-MSMS	OvCa9_classI_Rep2	2	504.2966613769531	2	504.296499	1006.57845	-0.51106	-0.00025773	0.13731	6.9246E-05	-0.37375	-0.00018848	504.2965168618611	31.671	1.532	28.961	28.69	30.222	-2.7097					81	30	4	0	0	0	0.56889	1	1037	1037		35.618	0	1	812760			50375	4011	41688	41718	54567	54567					0.0754192272564751
RPRPAQVGG	9	Unmodified	_RPRPAQVGG_					0	0	0			REV__nc|ENSG00000182648|Q8NI28|RNF32-DT	REV__nc|ENSG00000182648|Q8NI28|RNF32-DT	MULTI-MSMS	OvCa9_classI_Rep2	2	469.26953125	2	469.26995	936.525347	-1.6259	-0.00076298	1.5165	0.00071165	-0.10938	-5.133E-05	469.27056569218416	38.266	0.84095	35.556	35.32	36.161	-2.7097					26	16	2	0	0	0	0.46377	1	1782	1782		45.952	3.4775	1	60520	+		50376	29042	41689	41719	54568	54568					0.05454544942995199
RPRPAQVGG	9	Unmodified	_RPRPAQVGG_					0	0	0			REV__nc|ENSG00000182648|Q8NI28|RNF32-DT	REV__nc|ENSG00000182648|Q8NI28|RNF32-DT	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	469.26995	936.525347	-1.6259	-0.00076298	1.5165	0.00071165	-0.10938	-5.133E-05	469.27056569218416	38.266	0.84095	35.556	35.32	36.161	-2.7097	0.062273	0.0014087	NaN	45.952	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60520	+		50377	29042	41689	41719							0.05454544942995199
RPRPAWTI	8	Unmodified	_RPRPAWTI_					0	0	0		ENST00000359866.8_1_19:17431114-17431327:+|nuORF	ENST00000359866.8_1_19:17431114-17431327:+|nuORF	ENST00000359866.8_1_19:17431114-17431327:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	498.7887268066406	2	498.790518	995.566484	0.032773	1.6347E-05	-3.9839	-0.0019871	-3.9511	-0.0019708	498.78956440605833	118.98	1.288	117.95	117.58	118.87	-1.0271					73	25	4	0	0	0	0.7043	1	9019	9019		42.474	0	1	100180			50378	10758	41690	41720	54569	54569					0.06852305982454254
RPRPDDLEI	9	Unmodified	_RPRPDDLEI_					0	0	0		ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	MULTI-MSMS	OvCa9_classI_Rep2	2	555.7970581054688	2	555.798737	1109.58292	0.67356	0.00037436	-1.2184	-0.00067718	-0.54484	-0.00030282	555.7980692819577	66.887	2.2263	64.226	63.651	65.878	-2.661					106	44	4	0	0	0	0.35444	2	5193	5193;5211		56.721	7.185	1	1196600			50379	5635	41691	41721	54570;54571	54570					0.03251342357884823
RPRPDDLEI	9	Unmodified	_RPRPDDLEI_					0	0	0		ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	ENSG00000152661|ENST00000282561|GJA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.7990112304688	2	555.798737	1109.58292	1.7561	0.00097606	-2.5165	-0.0013986	-0.76033	-0.00042259	555.7973607048004	67.728	1.8648	64.237	63.888	65.753	-3.4902					91	37	4	0	0	0	0.083631	4	4987	4976;4987;5011;5025		101.6	32.814	1	2230700			50380	5635	41691	41721	54572;54573;54574;54575	54573					0.03251342357884823
RPRPGNILL	9	Unmodified	_RPRPGNILL_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	OvCa9_classI_Rep2	2	518.3247680664062	2	518.324725	1034.6349	-0.20131	-0.00010434	-0.59303	-0.00030738	-0.79433	-0.00041172	518.3244380054447	69.411	2.6973	66.791	66.416	69.113	-2.6203					144	52	4	0	0	0	0.53957	2	5523	5523;5537		38.806	3.1879	1	2532100			50381	2130	41692	41722	54576;54577	54576					0.11896550562323682
RPRPGNILL	9	Unmodified	_RPRPGNILL_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	OvCa9_classI_Rep3	3	518.3243408203125	2	518.324725	1034.6349	1.0131	0.00052512	-1.7305	-0.00089695	-0.71737	-0.00037183	518.3238379693353	69.479	3.4447	66.665	66.312	69.756	-2.8144					184	68	5	0	0	0	0.29717	8	3137	3089;3095;3101;3113;3125;3131;3137;3143		63.306	19.189	1	3734200			50382	2130	41692	41722	54578;54579;54580;54581;54582;54583;54584;54585	54584					0.11896550562323682
RPRPGNILL	9	Unmodified	_RPRPGNILL_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.3258056640625	2	518.324725	1034.6349	-1.0284	-0.00053303	0.70556	0.00036571	-0.32281	-0.00016732	518.3250657043614	70.688	2.5247	67.207	66.836	69.361	-3.4812					145	51	4	0	0	0	0.53957	1	5372	5372		38.806	1.647	1	2922500			50383	2130	41692	41722	54586	54586					0.11896550562323682
RPRPGNILLQL	11	Unmodified	_RPRPGNILLQL_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	OvCa9_classI_Rep4_	4	638.8973388671875	2	638.896046	1275.77754	-0.53707	-0.00034313	-0.63851	-0.00040794	-1.1756	-0.00075107	638.8954846802164	100.88	1.8421	98.613	98.187	100.03	-2.2665					80	36	4	0	0	0	0.58572	1	9035	9035		45.972	16.802	1	266330			50384	2130	41693	41723	54587	54587					0.1506813823370976
RPRPGRPTA	9	Unmodified	_RPRPGRPTA_					0	0	0		ENST00000595369.1_1_19:6759548-6763810:-|nuORF;ENST00000595681.5_1_19:6754625-6763810:-|nuORF;ENSG00000125731|ENST00000245908|SH2D3A	ENST00000595369.1_1_19:6759548-6763810:-|nuORF	ENST00000595369.1_1_19:6759548-6763810:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	504.2961120605469	2	504.296499	1006.57845	-0.51106	-0.00025773	0.13731	6.9246E-05	-0.37375	-0.00018848	504.2965168618611	31.671	1.532	28.961	28.69	30.222	-2.7097					81	30	4	0	0	0	0.31747	1	987	987		60.972	0	1	812760			50385	3726	41694	41724	54588	54588					0.07541922725658878
RPRPGTGL	8	Unmodified	_RPRPGTGL_					0	0	0		ENSG00000184840|ENST00000332598|TMED9;ENST00000505521.1_1_5:177019227-177019656:+|nuORF	ENSG00000184840|ENST00000332598|TMED9	ENSG00000184840|ENST00000332598|TMED9	MULTI-MSMS	OvCa9_classI_Rep2	2	427.2535095214844	2	427.253769	852.492984	-1.369	-0.00058491	1.6643	0.00071106	0.29526	0.00012615	427.254318949799	38.75	1.1373	36.041	35.816	36.953	-2.7097					54	22	3	0	0	0	0.67745	1	1840	1840		47.916	7.343	1	356560			50386	8194	41695	41725	54589	54589					0.0608375753998871
RPRPKTGG	8	Unmodified	_RPRPKTGG_					0	0	0		ENST00000593308.1_1_19:49127844-49128000:+|nuORF	ENST00000593308.1_1_19:49127844-49128000:+|nuORF	ENST00000593308.1_1_19:49127844-49128000:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	434.7593078613281	2	434.759218	867.503883	-0.54476	-0.00023684	0.73073	0.00031769	0.18597	8.0851E-05	434.7594502813862	138.35	2.0585	138.12	137.54	139.6	-0.22697					104	41	4	0	0	0	0.75723	1	13808	13808		23.042	2.5607	1	279250			50387	14153	41696	41726	54590	54590					0.06483159914284897
RPRPLWATV	9	Unmodified	_RPRPLWATV_					0	0	0		ITGB3-DYNLRB1|1|fusion;ITGB3|p.P189Kfs*24|1|0.05|ENSG00000259207|chr17:47284645-47284646|-/AAAGGGACCAGGGCTTT|frameshift_variant;nc|ENSG00000259207|P05106-2|ITGB3;nc|ENSG00000259207|P05106-3|ITGB3;ENSG00000259207|ENST00000559488|ITGB3	ITGB3-DYNLRB1|1|fusion	ITGB3-DYNLRB1|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.29541015625	2	548.324725	1094.6349	0.58702	0.00032188	-1.4427	-0.00079106	-0.85565	-0.00046918	548.8259187235643	34.912	0.30387	32.124	31.947	32.25	-2.7881					6	5	2	0	0	0	0.027462	1	1069	1069		21.96	5.4867	1	7976.5			50388	14509	41697	41727	54591	54591					0.0913655056231164
RPRPMPPLT	9	Unmodified	_RPRPMPPLT_					0	0	0		ENST00000238831.8_1_2:32503207-32515566:+|nuORF	ENST00000238831.8_1_2:32503207-32515566:+|nuORF	ENST00000238831.8_1_2:32503207-32515566:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	531.8433227539062	2	532.805311	1063.59607	-0.48266	-0.00025716	-4.401	-0.0023449	-4.8836	-0.002602	532.8024997624908	87.041	1.0699	84.864	84.481	85.551	-2.1768					44	20	3	0	0	0	0.027462	1	5243	5243		45.952	0	1	67472			50389	9752	41698	41728	54592	54592					0.06681501936304812
RPRPPITL	8	Unmodified	_RPRPPITL_					0	0	0		nc|ENSG00000136715|Q9H0E3|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130;nc|ENSG00000136715|Q9H0E3-2|SAP130	nc|ENSG00000136715|Q9H0E3|SAP130	nc|ENSG00000136715|Q9H0E3|SAP130	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.3003845214844	2	475.300719	948.586885	-0.28648	-0.00013616	-0.17915	-8.5152E-05	-0.46563	-0.00022132	475.3005730301736	66.287	2.253	62.796	62.369	64.622	-3.4902					129	45	5	0	0	0	0.64026	3	4857	4843;4857;4870		55.504	7.3995	1	3255100			50390	4506	41699	41729	54593;54594;54595	54594					0.11053476642268834
RPRPPITLL	9	Unmodified	_RPRPPITLL_					0	0	0		nc|ENSG00000136715|Q9H0E3|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130;nc|ENSG00000136715|Q9H0E3-2|SAP130	nc|ENSG00000136715|Q9H0E3|SAP130	nc|ENSG00000136715|Q9H0E3|SAP130	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8425903320312	2	531.842751	1061.67095	-1.3008	-0.00069181	0.36592	0.00019461	-0.93486	-0.0004972	531.8428658460189	86.158	2.0283	84.667	84.295	86.323	-1.4907					118	39	5	0	0	0	0.44568	5	7469	7469;7475;7481;7488;7499		47.657	8.4045	1	1213100			50391	4506	41700	41730	54596;54597;54598;54599;54600	54596					0.14258007739181267
RPRPPITLL	9	Unmodified	_RPRPPITLL_					0	0	0		nc|ENSG00000136715|Q9H0E3|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130;nc|ENSG00000136715|Q9H0E3-2|SAP130	nc|ENSG00000136715|Q9H0E3|SAP130	nc|ENSG00000136715|Q9H0E3|SAP130	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8438110351562	2	531.842751	1061.67095	-0.51734	-0.00027514	-0.0817	-4.3452E-05	-0.59904	-0.00031859	531.8426795493502	87.347	2.6082	85.17	84.633	87.241	-2.1768					142	51	5	0	0	0	0.42676	4	5261	5249;5261;5276;5294		49.442	2.2177	1	1464300			50392	4506	41700	41730	54601;54602;54603;54604	54602					0.14258007739181267
RPRPPITLL	9	Unmodified	_RPRPPITLL_					0	0	0		nc|ENSG00000136715|Q9H0E3|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130;nc|ENSG00000136715|Q9H0E3-2|SAP130	nc|ENSG00000136715|Q9H0E3|SAP130	nc|ENSG00000136715|Q9H0E3|SAP130	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8428955078125	2	531.842751	1061.67095	-3.0779	-0.001637	0.77801	0.00041378	-2.2999	-0.0012232	531.8431178075783	87.834	2.1996	85.207	84.698	86.898	-2.6269					116	43	4	0	0	0	0.42676	4	7527	7476;7501;7513;7527		49.442	17.487	1	1399000			50393	4506	41700	41730	54605;54606;54607;54608	54608					0.14258007739181267
RPRPPYRGP	9	Unmodified	_RPRPPYRGP_					0	0	0		ENST00000534961.5_1_8:42751546-42751720:-|nuORF	ENST00000534961.5_1_8:42751546-42751720:-|nuORF	ENST00000534961.5_1_8:42751546-42751720:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.29541015625	2	548.312149	1094.60975	0.53845	0.00029524	-2.2154	-0.0012147	-1.6769	-0.00091947	548.3109655826539	34.262	0.34833	31.473	31.399	31.747	-2.7881					10	6	2	0	0	0	0.027462	1	1021	1021		37.159	0.71236	1	32071			50394	13365	41701	41731	54609	54609					0.0662249575975693
RPRPQLSA	8	Unmodified	_RPRPQLSA_					0	0	0			REV__ENST00000260743.9_1_10:105210978-105212064:-|nuORF	REV__ENST00000260743.9_1_10:105210978-105212064:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.7718200683594	2	462.772326	923.530098	-0.69335	-0.00032086	0.0048986	2.267E-06	-0.68845	-0.00031859	462.77228078222635	39.503	1.3144	36.577	36.346	37.66	-2.9264					55	25	3	0	0	0	0.74229	1	1625	1625		30.504	1.3541	1	200750	+		50395	23933	41702	41732	54610	54610					0.06527429085747372
RPRPQLSA	8	Unmodified	_RPRPQLSA_					0	0	0			REV__ENST00000260743.9_1_10:105210978-105212064:-|nuORF	REV__ENST00000260743.9_1_10:105210978-105212064:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	462.772326	923.530098	-0.86029	-0.00039812	0.3124	0.00014457	-0.54789	-0.00025355	462.77238843856895	39.423	1.1385	36.714	36.013	37.152	-2.7097	0.068444	0.00021475	NaN	30.504	34	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43587	+		50396	23933	41702	41732							0.06527429085747372
RPRPQLSA	8	Unmodified	_RPRPQLSA_					0	0	0			REV__ENST00000260743.9_1_10:105210978-105212064:-|nuORF	REV__ENST00000260743.9_1_10:105210978-105212064:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	462.772326	923.530098	-0.69335	-0.00032086	0.0048986	2.267E-06	-0.68845	-0.00031859	462.77228078222635	39.503	1.3144	36.577	36.346	37.66	-2.9264	-0.068444	-6.9858E-05	NaN	30.504	55	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200750	+		50397	23933	41702	41732							0.06527429085747372
RPRPRLSE	8	Unmodified	_RPRPRLSE_					0	0	0			REV__ENSG00000170260|ENST00000335870|ZNF212	REV__ENSG00000170260|ENST00000335870|ZNF212	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.3119812011719	2	505.796332	1009.57811	-2.3004	-0.0011636	1.8036	0.00091224	-0.49687	-0.00025132	505.7971147868365	35.049	0.54252	32.339	32.158	32.701	-2.7097					13	10	2	0	0	0	0.028476	1	1398	1398		26.796	0	1	20165	+		50398	21524	41703	41733	54611	54611					0.0737050300580222
RPRPRPHGR	9	Unmodified	_RPRPRPHGR_					0	0	0		ENST00000373896.7_2_9:123636327-123639570:-|nuORF	ENST00000373896.7_2_9:123636327-123639570:-|nuORF	ENST00000373896.7_2_9:123636327-123639570:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	564.8343505859375	2	564.834114	1127.65368	-0.86944	-0.00049109	2.6824	0.0015151	1.8129	0.001024	564.8354063300067	55.53	0.54649	52.726	52.382	52.928	-2.804					30	10	4	0	0	0	0.29717	1	3882	3882		63.306	4.5243	1	267850			50399	11019	41704	41734	54612	54612					0.09495524976750858
RPRPRPHGR	9	Unmodified	_RPRPRPHGR_					0	0	0		ENST00000373896.7_2_9:123636327-123639570:-|nuORF	ENST00000373896.7_2_9:123636327-123639570:-|nuORF	ENST00000373896.7_2_9:123636327-123639570:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	564.834114	1127.65368	0.79207	0.00044739	0.70995	0.000401	1.502	0.00084839	564.83434076557	56.21	0.65889	52.916	52.361	53.02	-3.2944	0.094963	-0.00092517	NaN	63.306	37	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	277470			50400	11019	41704	41734							0.09495524976750858
RPRPSSVLRTL	11	Unmodified	_RPRPSSVLRTL_					0	0	0		ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	ENSG00000165507|ENST00000298295|DEPP1	MULTI-MSMS	OvCa9_classI_Rep3	3	427.9300537109375	3	427.929844	1280.7677	1.7119	0.00073257	-1.7813	-0.00076226	-0.069373	-2.9687E-05	427.9290217090034	65.493	1.4717	62.547	62.198	63.67	-2.9459					92	28	4	0	0	0	0.5804	6	2659	2606;2622;2628;2646;2653;2659		63.694	29.127	1	349590			50401	6571	41705	41735	54613;54614;54615;54616;54617;54618	54618					0.13854950228324014
RPRPSTDVRAL	11	Unmodified	_RPRPSTDVRAL_					0	0	0		ENSG00000158246|ENST00000289166|TENT5B	ENSG00000158246|ENST00000289166|TENT5B	ENSG00000158246|ENST00000289166|TENT5B	MULTI-MSMS	OvCa9_classI_Rep4_	4	423.2467041015625	3	423.245832	1266.71567	-1.9158	-0.00081085	1.366	0.00057813	-0.54983	-0.00023271	423.2463459416511	50.015	1.1449	46.873	46.507	47.651	-3.1416					60	21	4	0	0	0	0.69308	1	2854	2854		32.034	1.4653	1	474430			50402	5939	41706	41736	54619	54619					0.09297786814590836
RPRPSTDVRAL	11	Unmodified	_RPRPSTDVRAL_					0	0	0		ENSG00000158246|ENST00000289166|TENT5B	ENSG00000158246|ENST00000289166|TENT5B	ENSG00000158246|ENST00000289166|TENT5B	MULTI-MATCH	OvCa9_classI_Rep2	2		3	423.245832	1266.71567	-0.90111	-0.00038139	0.985	0.0004169	0.083898	3.5509E-05	423.24610150460893	49.589	1.3387	46.829	46.325	47.664	-2.7603	-0.022225	-0.00031182	NaN	32.034	67	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175090			50403	5939	41706	41736							0.09297786814590836
RPRPSVYIP	9	Unmodified	_RPRPSVYIP_					0	0	0		ENSG00000105655|ENST00000338128|ISYNA1;nc|ENSG00000105655|Q9NPH2-2|ISYNA1;ENST00000577820.5_1_19:18545725-18548921:-|nuORF;nc|ENSG00000105655|Q9NPH2-3|ISYNA1	ENSG00000105655|ENST00000338128|ISYNA1	ENSG00000105655|ENST00000338128|ISYNA1	MULTI-MSMS	OvCa9_classI_Rep3	3	542.816162109375	2	542.816733	1083.61891	0.8927	0.00048457	-1.067	-0.0005792	-0.17432	-9.4625E-05	542.8160168304049	68.906	1.1984	66.092	65.762	66.961	-2.8144					67	23	4	0	0	0	0.40667	2	3038	3031;3038		51.335	3.4199	1	289330			50404	2483	41707	41737	54620;54621	54621					0.08044844325399936
RPRPTEATV	9	Unmodified	_RPRPTEATV_					0	0	0		ENST00000592297.2_1_19:1083019-1086002:+|nuORF;ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45	ENST00000592297.2_1_19:1083019-1086002:+|nuORF	ENST00000592297.2_1_19:1083019-1086002:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	513.7880859375	2	513.788173	1025.56179	-0.70394	-0.00036168	0.27174	0.00013962	-0.43221	-0.00022206	513.7882058006563	39.281	1.982	36.571	35.964	37.946	-2.7097					102	39	5	0	0	0	0.37135	1	1906	1906		54.776	3.4409	1	512530			50405	7875	41708	41738	54622	54622					0.05003377049024493
RPRPTEATVSL	11	Unmodified	_RPRPTEATVSL_					0	0	0		ENST00000592297.2_1_19:1083019-1086002:+|nuORF;ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45	ENST00000592297.2_1_19:1083019-1086002:+|nuORF	ENST00000592297.2_1_19:1083019-1086002:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	613.8428955078125	2	613.846219	1225.67788	-1.3186	-0.00080939	1.0654	0.00065396	-0.25321	-0.00015543	613.846862023676	60.404	2.094	57.633	57.032	59.126	-2.7702					128	39	6	0	0	0	0.48812	1	4438	4438		54.722	3.1946	1	1043300			50406	7875	41709	41739	54623	54623					0.07407275829086757
RPRPTEATVSL	11	Unmodified	_RPRPTEATVSL_					0	0	0		ENST00000592297.2_1_19:1083019-1086002:+|nuORF;ENST00000587602.5_1_19:1073185-1086002:+|nuORF;ENSG00000180448|ENST00000313093|ARHGAP45;nc|ENSG00000180448|Q92619-2|ARHGAP45	ENST00000592297.2_1_19:1083019-1086002:+|nuORF	ENST00000592297.2_1_19:1083019-1086002:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	613.8475952148438	2	613.846219	1225.67788	0.44639	0.00027401	-1.2428	-0.00076291	-0.79645	-0.0004889	613.8454693997087	61.199	1.9887	57.769	57.395	59.384	-3.43					134	40	6	0	0	0	0.25285	1	4177	4177		72.879	9.3454	1	3122600			50407	7875	41709	41739	54624	54624					0.07407275829086757
RPRPTPPAPT	10	Unmodified	_RPRPTPPAPT_					0	0	0			REV__ENSG00000100139|ENST00000215957|MICALL1	REV__ENSG00000100139|ENST00000215957|MICALL1	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3118896484375	2	545.311815	1088.60908	-2.7951	-0.0015242	2.6544	0.0014475	-0.1407	-7.6727E-05	545.3131823387719	36.778	0.98604	34.069	33.844	34.83	-2.7097					48	19	4	0	0	0	0.58067	1	1607	1607		44.377	7.2181	1	194620	+		50408	17372	41710	41740	54625	54625					0.06831656320036927
RPRQALPL	8	Unmodified	_RPRQALPL_					0	0	0			REV__ENSG00000180549|ENST00000314412|FUT7	REV__ENSG00000180549|ENST00000314412|FUT7	MULTI-MSMS	OvCa9_classI_Rep2	2	475.79827880859375	2	475.798343	949.582134	-1.1416	-0.00054318	1.0631	0.00050583	-0.078494	-3.7347E-05	475.7987527158406	55.46	1.1933	52.646	52.022	53.215	-2.8139					74	23	4	0	0	0	0.69415	1	3857	3857		44.531	7.5026	1	547610	+		50409	22181	41711	41741	54626	54626					0.10532592499521343
RPRQGVAFKHT	11	Unmodified	_RPRQGVAFKHT_					0	0	0		ENST00000442133.8_1_10:75256199-75264836:+|nuORF	ENST00000442133.8_1_10:75256199-75264836:+|nuORF	ENST00000442133.8_1_10:75256199-75264836:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	432.9154052734375	3	432.914305	1295.72109	-1.1041	-0.00047799	3.1241	0.0013525	2.02	0.0008745	432.9158567399814	54.785	2.7829	51.971	51.473	54.256	-2.8139					169	55	5	0	0	0	0.70587	1	3852	3852		27.644	0.59661	1	2816800			50410	11940	41712	41742	54627	54627					0.08505510397026228
RPRQPILF	8	Unmodified	_RPRQPILF_					0	0	0		ENST00000535366.5_1_12:7024555-7024630:+|nuORF	ENST00000535366.5_1_12:7024555-7024630:+|nuORF	ENST00000535366.5_1_12:7024555-7024630:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	513.8152465820312	2	513.813993	1025.61343	-0.4504	-0.00023142	2.667	0.0013703	2.2166	0.0011389	513.8152848157494	74.741	2.4404	72.77	72.324	74.764	-1.9711					110	46	3	0	0	0	0.69415	1	6154	6154		44.531	2.0566	1	2623500			50411	13371	41713	41743	54628	54628					0.1016516553358997
RPRQPPRT	8	Unmodified	_RPRQPPRT_					0	0	0		ENST00000302754.5_1_19:12902350-12902593:+|nuORF	ENST00000302754.5_1_19:12902350-12902593:+|nuORF	ENST00000302754.5_1_19:12902350-12902593:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	504.2962951660156	2	504.296499	1006.57845	-0.51106	-0.00025773	0.13731	6.9246E-05	-0.37375	-0.00018848	504.2965168618611	31.671	1.532	28.961	28.69	30.222	-2.7097					81	30	4	0	0	0	0.68704	1	1042	1042		45.972	14.442	1	812760			50412	10206	41714	41744	54629	54629					0.0754192272564751
RPRQRKAR	8	Unmodified	_RPRQRKAR_					0	0	0			REV__ENST00000237500.9_1_18:3262182-3273017:+|nuORF	REV__ENST00000237500.9_1_18:3262182-3273017:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	534.3377075195312	2	534.33649	1066.65843	-1.8836	-0.0010065	3.9795	0.0021264	2.0959	0.0011199	534.3385363027232	49.37	2.527	46.609	45.829	48.356	-2.7603					129	50	4	0	0	0	0.67745	1	3119	3119		47.916	0.25827	1	911830	+		50413	23809	41715	41745	54630	54630					0.12776409119487653
RPRQRPDV	8	Unmodified	_RPRQRPDV_					0	0	0		ENST00000461204.1_1_20:25300894-25303963:-|nuORF	ENST00000461204.1_1_20:25300894-25303963:-|nuORF	ENST00000461204.1_1_20:25300894-25303963:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.2931518554688	2	512.293956	1022.57336	0.73059	0.00037427	-0.77108	-0.00039502	-0.040496	-2.0746E-05	512.2934110538755	35.064	1.2028	32.215	31.936	33.139	-2.849					59	23	3	0	0	0	0.65062	1	1082	1082		53.351	0.41475	1	329190			50414	12173	41716	41746	54631	54631					0.06297618863038679
RPRQVRVT	8	Unmodified	_RPRQVRVT_					0	0	0			REV__ENSG00000126070|ENST00000373191|AGO3	REV__ENSG00000126070|ENST00000373191|AGO3	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.31219482421875	2	506.312149	1010.60975	0.46307	0.00023446	-0.8186	-0.00041446	-0.35553	-0.00018001	506.3116358736659	34.315	1.6506	31.527	31.2	32.85	-2.7881					67	32	4	0	0	0	0.66057	1	1034	1034		51.335	6.8044	1	624090	+		50415	18770	41717	41747	54632	54632					0.1048649575974423
RPRRAAAEPG	10	Unmodified	_RPRRAAAEPG_					0	0	0		ENSG00000214860|ENST00000399134|EVPLL	ENSG00000214860|ENST00000399134|EVPLL	ENSG00000214860|ENST00000399134|EVPLL	MULTI-MSMS	OvCa9_classI_Rep2	2	540.80419921875	2	540.804688	1079.59482	-2.4915	-0.0013474	2.9764	0.0016096	0.48483	0.0002622	540.8058905637274	34.869	1.1922	32.159	31.91	33.102	-2.7097					80	23	5	0	0	0	0.66721	1	1372	1372		34.173	0.25091	1	239100			50416	9186	41718	41748	54633	54633					0.058210038917422935
RPRRAAAEPG	10	Unmodified	_RPRRAAAEPG_					0	0	0		ENSG00000214860|ENST00000399134|EVPLL	ENSG00000214860|ENST00000399134|EVPLL	ENSG00000214860|ENST00000399134|EVPLL	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.8049926757812	2	540.804688	1079.59482	0.050459	2.7288E-05	0.22996	0.00012437	0.28042	0.00015165	540.8047771597005	33.339	1.6874	30.644	30.352	32.039	-2.6954					106	33	4	0	0	0	0.37436	1	890	890		71.877	5.4482	1	998350			50417	9186	41718	41748	54634	54634					0.058210038917422935
RPRRAFYKT	9	Unmodified	_RPRRAFYKT_					0	0	0		ENST00000481288.1_1_13:99171644-99228294:-|nuORF	ENST00000481288.1_1_13:99171644-99228294:-|nuORF	ENST00000481288.1_1_13:99171644-99228294:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8427124023438	2	597.846356	1193.67816	0.16357	9.7791E-05	-4.4262	-0.0026462	-4.2626	-0.0025484	597.8439550287295	39.708	1.7287	36.754	36.268	37.997	-2.9541					97	33	4	0	0	0	0.2422	1	1670	1670		69.628	4.1622	1	512190			50418	12543	41719	41749	54635	54635					0.08906740339602948
RPRRAFYKT	9	Unmodified	_RPRRAFYKT_					0	0	0		ENST00000481288.1_1_13:99171644-99228294:-|nuORF	ENST00000481288.1_1_13:99171644-99228294:-|nuORF	ENST00000481288.1_1_13:99171644-99228294:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	597.846356	1193.67816	-1.062	-0.00063494	-2.5752	-0.0015396	-3.6373	-0.0021745	597.8448623061217	39.625	1.1911	36.915	36.509	37.7	-2.7097	0.080869	0.00046009	NaN	69.628	64	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140150			50419	12543	41719	41749							0.08906740339602948
RPRRARNR	8	Unmodified	_RPRRARNR_					0	0	0			REV__sp|P16727|UL84_HCMVAProteinUL84OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL84PE=1SV=1	REV__sp|P16727|UL84_HCMVAProteinUL84OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL84PE=1SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.8226928710938	2	541.331739	1080.64892	0.045479	2.4619E-05	0.6371	0.00034488	0.68258	0.0003695	541.3317381721379	31.119	0.28381	31.119	31.027	31.311	0					8	5	2	0	0	0	0.028476	1	1244	1244		50.025	11.218	1	85971	+		50420	29390	41720	41750	54636	54636					0.1118264083397662
RPRRCTKY	8	Unmodified	_RPRRCTKY_					0	0	0			REV__ENST00000460758.1_1_3:48511100-48514492:-|nuORF	REV__ENST00000460758.1_1_3:48511100-48514492:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	540.2975463867188	2	540.298185	1078.58182	-1.8908	-0.0010216	1.5096	0.00081564	-0.38116	-0.00020594	540.2989536670705	38.535	2.9688	35.825	35.469	38.438	-2.7097					158	59	5	0	0	0	0.73205	1	1827	1827		35.618	0	1	1380400	+		50421	20929	41721	41751	54637	54637					0.04566849508000814
RPRREEVKL	9	Unmodified	_RPRREEVKL_					0	0	0		ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MULTI-MSMS	OvCa9_classI_Rep2	2	591.8562622070312	2	591.856921	1181.69929	-1.0559	-0.00062492	1.0315	0.00061048	-0.024382	-1.4431E-05	591.8573910777626	39.473	1.2899	36.763	36.459	37.749	-2.7097					73	25	4	0	0	0	0.26076	2	1926	1926;1941		67.494	12.717	1	212370			50422	5098	41722	41752	54638;54639	54638					0.11570705648477997
RPRRERDFRDR	11	Unmodified	_RPRRERDFRDR_					0	0	0			REV__nc|ENSG00000119596|P49750-3|YLPM1	REV__nc|ENSG00000119596|P49750-3|YLPM1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3395385742188	3	520.285572	1557.83489	-0.92043	-0.00047889	1.7787	0.00092545	0.8583	0.00044656	520.6210039039062	40.268	0.57637	37.314	37.213	37.789	-2.9541					13	10	2	0	0	0	0.026383	1	1718	1718		17.833	7.7292	1	36834	+		50423	18452	41723	41753	54640	54640					0.07828373491952334
RPRRGRGGW	9	Unmodified	_RPRRGRGGW_					0	0	0			REV__ENST00000562977.1_1_16:28962332-28970171:+|nuORF	REV__ENST00000562977.1_1_16:28962332-28970171:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.31298828125	2	549.313015	1096.61148	0.63087	0.00034654	-2.1935	-0.0012049	-1.5626	-0.00085836	549.3116312947706	37.41	1.3447	34.518	34.142	35.487	-2.8925					68	26	4	0	0	0	0.61208	1	1402	1402		30.504	2.6214	1	412270	+		50424	21978	41724	41754	54641	54641					0.06703549568374001
RPRRLRRRM	9	Unmodified	_RPRRLRRRM_					0	0	0		ENST00000561819.1_1_16:50099995-50103179:+|nuORF	ENST00000561819.1_1_16:50099995-50103179:+|nuORF	ENST00000561819.1_1_16:50099995-50103179:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	432.9153137207031	3	432.938791	1295.79454	-1.1383	-0.0004928	1.9398	0.00083983	0.80157	0.00034703	432.9397906550024	54.861	0.40014	52.047	51.772	52.172	-2.8139					14	7	2	0	0	0	0.027462	1	3801	3801		47.657	1.6851	1	17466			50425	13760	41725	41755	54642	54642					0.15847780358512864
RPRRLSGELV	10	Unmodified	_RPRRLSGELV_					0	0	0		ENSG00000169884|ENST00000301061|WNT10B	ENSG00000169884|ENST00000301061|WNT10B	ENSG00000169884|ENST00000301061|WNT10B	MULTI-MSMS	OvCa9_classI_Rep2	2	591.8568115234375	2	591.856921	1181.69929	-1.0559	-0.00062492	1.0315	0.00061048	-0.024382	-1.4431E-05	591.8573910777626	39.473	1.2899	36.763	36.459	37.749	-2.7097					73	25	4	0	0	0	0.60504	1	1937	1937		41.427	0	1	212370			50426	7047	41726	41756	54643	54643					0.11570705648477997
RPRRLSGELV	10	Unmodified	_RPRRLSGELV_					0	0	0		ENSG00000169884|ENST00000301061|WNT10B	ENSG00000169884|ENST00000301061|WNT10B	ENSG00000169884|ENST00000301061|WNT10B	MULTI-MSMS	OvCa9_classI_Rep4_	4	591.8565063476562	2	591.856921	1181.69929	-0.045511	-2.6936E-05	-0.40598	-0.00024028	-0.45149	-0.00026722	591.8566337031529	39.492	1.4669	36.566	36.246	37.713	-2.9264					78	28	4	0	0	0	0.59317	1	1630	1630		42.864	1.4377	1	369550			50427	7047	41726	41756	54644	54644					0.11570705648477997
RPRRNVGIWK	10	Unmodified	_RPRRNVGIWK_					0	0	0			REV__C9orf3-HIATL1|1|fusion	REV__C9orf3-HIATL1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.3842163085938	2	641.38618	1280.75781	-6.1302	-0.0039319	3.8655	0.0024793	-2.2647	-0.0014526	641.3884310920467	161.98	1.0437	160.36	160.01	161.05	-1.6239					61	26	4	0	0	0	0.83261	1	16014	16014		14.865	6.1712	1	67910	+		50428	15721	41727	41757	54645	54645					0.12865807013577069
RPRRPPASA	9	Unmodified	_RPRRPPASA_					0	0	0			REV__ENSG00000133116|ENST00000380099|KL	REV__ENSG00000133116|ENST00000380099|KL	MULTI-MSMS	OvCa9_classI_Rep2	2	504.2956848144531	2	504.296499	1006.57845	-0.51106	-0.00025773	0.13731	6.9246E-05	-0.37375	-0.00018848	504.2965168618611	31.671	1.532	28.961	28.69	30.222	-2.7097					81	30	4	0	0	0	0.42676	1	1006	1006		49.442	0	1	812760	+		50429	19131	41728	41758	54646	54646					0.0754192272564751
RPRRPRVR	8	Unmodified	_RPRRPRVR_					0	0	0			REV__ENST00000371873.9_1_1:47799697-47834181:+|nuORF	REV__ENST00000371873.9_1_1:47799697-47834181:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	546.8097534179688	2	546.852307	1091.69006	-0.55187	-0.00030179	2.024	0.0011068	1.4721	0.00080504	546.8533458502868	76.677	1.9848	74.847	74.489	76.474	-1.8301					74	37	3	0	0	0	0.028476	1	6505	6505		57.811	20.652	1	157860	+		50430	24990	41729	41759	54647	54647					0.14788401873443036
RPRRREREGT	10	Unmodified	_RPRRREREGT_					0	0	0		ENST00000580114.5_3_16:67197575-67198388:+|nuORF	ENST00000580114.5_3_16:67197575-67198388:+|nuORF	ENST00000580114.5_3_16:67197575-67198388:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	438.24810791015625	3	438.248347	1311.72321	-0.94426	-0.00041382	-2.6688	-0.0011696	-3.6131	-0.0015834	438.24727429837515	44.073	2.9282	41.065	40.326	43.254	-3.0074					162	56	4	0	0	0	0.62712	1	2150	2150		38.754	1.2454	1	4884200			50431	13983	41730	41760	54648	54648					0.07981939134833738
RPRRRGGEETV	11	Unmodified	_RPRRRGGEETV_					0	0	0		ENST00000244745.3_2_6:21597104-21597149:+|nuORF	ENST00000244745.3_2_6:21597104-21597149:+|nuORF	ENST00000244745.3_2_6:21597104-21597149:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	438.24688720703125	3	438.244603	1311.71198	1.181	0.00051758	4.0685	0.001783	5.2495	0.0023006	438.2463941604818	43.965	2.0387	41.255	40.758	42.797	-2.7097					118	40	4	0	0	0	0.70587	1	2449	2449		27.644	3.4121	1	1317400			50432	9771	41731	41761	54649	54649					0.06859117040721685
RPRRRRRRRQE	11	Unmodified	_RPRRRRRRRQE_					0	0	0		ENST00000514738.5_1_5:31193871-31267519:+|nuORF	ENST00000514738.5_1_5:31193871-31267519:+|nuORF	ENST00000514738.5_1_5:31193871-31267519:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.24774169921875	4	406.250623	1620.97339	1.1035	0.00044832	-2.8037	-0.001139	-1.7002	-0.00069069	406.2488695867466	30.387	0.24662	30.387	30.236	30.483	0					6	4	2	0	0	0	0.02656	1	1166	1166		0.31226	0	1	7888.6			50433	13034	41732	41762	54650	54650					0.18773961250963112
RPRRRRRRWKG	11	Unmodified	_RPRRRRRRWKG_					0	0	0			REV__ENST00000453677.1_1_7:104654330-104654752:-|nuORF	REV__ENST00000453677.1_1_7:104654330-104654752:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	527.6656494140625	3	527.329558	1578.96685	0.51783	0.00027307	2.4021	0.0012667	2.9199	0.0015398	527.3307620118098	81.089	0.54245	81.089	80.871	81.413	0					35	12	4	0	0	0	0.72573	1	8340	8340		6.001	4.7691	1	1115600	+		50434	25994	41733	41763	54651	54651					0.2005206809021729
RPRRRRRRWKG	11	Unmodified	_RPRRRRRRWKG_					0	0	0			REV__ENST00000453677.1_1_7:104654330-104654752:-|nuORF	REV__ENST00000453677.1_1_7:104654330-104654752:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.3409423828125	3	527.329558	1578.96685	-1.1961	-0.00063074	1.4355	0.00075697	0.23938	0.00012623	527.3301452398531	87.742	1.0791	85.566	85.19	86.269	-2.1768					60	20	4	0	0	0	0.026551	1	5252	5252		1.4188	0	1	95821	+		50435	25994	41733	41763	54652	54652					0.2005206809021729
RPRRRRRRWKG	11	Unmodified	_RPRRRRRRWKG_					0	0	0			REV__ENST00000453677.1_1_7:104654330-104654752:-|nuORF	REV__ENST00000453677.1_1_7:104654330-104654752:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	527.329558	1578.96685	0.51783	0.00027307	2.4021	0.0012667	2.9199	0.0015398	527.3307620118098	81.089	0.54245	81.089	80.871	81.413	0	0	0	NaN	6.001	35	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1115600	+		50436	25994	41733	41763							0.2005206809021729
RPRRSGHGAT	10	Unmodified	_RPRRSGHGAT_					0	0	0		ENST00000409160.7_1_2:239148502-239148571:-|nuORF	ENST00000409160.7_1_2:239148502-239148571:-|nuORF	ENST00000409160.7_1_2:239148502-239148571:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	547.802734375	2	547.799937	1093.58532	0.084644	4.6368E-05	2.7588	0.0015113	2.8435	0.0015576	547.8015077520115	46.176	1.4001	46.176	45.979	47.379	0					95	31	5	0	0	0	0.49558	1	3257	3257		54.776	1.4249	1	11785000			50437	11515	41734	41764	54653	54653					0.04227235606231261
RPRRSLCPTVQ	11	Unmodified	_RPRRSLCPTVQ_					0	0	0			REV__nc|ENSG00000088888|Q7Z434-6|MAVS	REV__nc|ENSG00000088888|Q7Z434-6|MAVS	MULTI-MSMS	OvCa9_classI_Rep2	2	438.2469787597656	3	438.247067	1311.71937	1.181	0.00051758	-1.5551	-0.00068153	-0.3741	-0.00016395	438.2463941604818	43.965	2.0387	41.255	40.758	42.797	-2.7097					118	40	4	0	0	0	0.70587	2	2481	2481;2493		27.644	4.266	1	1317400	+		50438	28749	41735	41765	54654;54655	54654					0.07598133316764688
RPRRVLGAS	9	Unmodified	_RPRRVLGAS_					0	0	0		ENST00000394976.3_1_5:134181688-134181898:+|nuORF	ENST00000394976.3_1_5:134181688-134181898:+|nuORF	ENST00000394976.3_1_5:134181688-134181898:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.3122863769531	2	506.312149	1010.60975	0.46307	0.00023446	-0.8186	-0.00041446	-0.35553	-0.00018001	506.3116358736659	34.315	1.6506	31.527	31.2	32.85	-2.7881					67	32	4	0	0	0	0.28934	1	1010	1010		64.207	2.0999	1	624090			50439	11280	41736	41766	54656	54656					0.1048649575974423
RPRRVSQL	8	Unmodified	_RPRRVSQL_					0	0	0		ENSG00000151743|ENST00000281471|AMN1;ENST00000509386.2_1_12:31872283-31882011:-|nuORF;ENST00000541931.5_1_12:31854916-31882011:-|nuORF;ENST00000541541.5_1_12:31862005-31881942:-|nuORF	ENSG00000151743|ENST00000281471|AMN1	ENSG00000151743|ENST00000281471|AMN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.3122863769531	2	506.312149	1010.60975	0.46307	0.00023446	-0.8186	-0.00041446	-0.35553	-0.00018001	506.3116358736659	34.315	1.6506	31.527	31.2	32.85	-2.7881					67	32	4	0	0	0	0.73205	1	1022	1022		35.618	0	1	624090			50440	5580	41737	41767	54657	54657					0.1048649575974423
RPRSAAGRRAE	11	Unmodified	_RPRSAAGRRAE_					0	0	0		ENST00000489020.1_1_1:20810886-20811114:-|nuORF	ENST00000489020.1_1_1:20810886-20811114:-|nuORF	ENST00000489020.1_1_1:20810886-20811114:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	613.8468017578125	2	613.844876	1225.6752	-1.3186	-0.00080939	3.2527	0.0019966	1.9341	0.0011872	613.846862023676	60.404	2.094	57.633	57.032	59.126	-2.7702					128	39	6	0	0	0	0.68059	1	4470	4470		36.318	2.396	1	1043300			50441	12671	41738	41768	54658	54658					0.07138865214824364
RPRSAAPRP	9	Unmodified	_RPRSAAPRP_					0	0	0			REV__ENSG00000130758|ENST00000253055|MAP3K10	REV__ENSG00000130758|ENST00000253055|MAP3K10	MULTI-MSMS	OvCa9_classI_Rep2	2	504.2963562011719	2	504.296499	1006.57845	-0.51106	-0.00025773	0.13731	6.9246E-05	-0.37375	-0.00018848	504.2965168618611	31.671	1.532	28.961	28.69	30.222	-2.7097					81	30	4	0	0	0	0.3076	1	981	981		62.107	10.772	1	812760	+		50442	18968	41739	41769	54659	54659					0.0754192272564751
RPRSRPVP	8	Unmodified	_RPRSRPVP_					0	0	0			REV__ENST00000359759.8_2_21:46876417-46888416:+|nuORF	REV__ENST00000359759.8_2_21:46876417-46888416:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	483.294677734375	2	482.793592	963.572632	1.1104	0.00053611	-4.2198	-0.0020373	-3.1094	-0.0015012	482.79146252518456	155.03	3.9291	155.03	153.98	157.91	0					134	77	2	0	0	0	0.7549	1	18287	18287		24.203	0	1	132880	+		50443	24819	41740	41770	54660	54660					0.08938824213987573
RPRSVASIH	9	Unmodified	_RPRSVASIH_					0	0	0		nc|ENSG00000136141|Q9Y2L9-2|LRCH1;nc|ENSG00000136141|Q9Y2L9|LRCH1;ENSG00000136141|ENST00000389797|LRCH1;nc|ENSG00000130224|Q5VUJ6-2|LRCH2;ENSG00000130224|ENST00000317135|LRCH2	nc|ENSG00000136141|Q9Y2L9-2|LRCH1;nc|ENSG00000130224|Q5VUJ6-2|LRCH2	nc|ENSG00000130224|Q5VUJ6-2|LRCH2	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.7961120605469	2	511.796332	1021.57811	-0.22716	-0.00011626	-0.31979	-0.00016367	-0.54694	-0.00027992	511.79610725193794	39.248	1.2934	36.321	35.997	37.291	-2.9264					72	25	4	0	0	0	0.42676	1	1598	1598		49.442	1.7842	1	711950			50444	3969;4460	41741	41771	54661	54661					0.06818503005797538
RPRTLPPL	8	Unmodified	_RPRTLPPL_					0	0	0		ENSG00000174132|ENST00000312637|FAM174A	ENSG00000174132|ENST00000312637|FAM174A	ENSG00000174132|ENST00000312637|FAM174A	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.301513671875	2	475.300719	948.586885	-0.28648	-0.00013616	-0.17915	-8.5152E-05	-0.46563	-0.00022132	475.3005730301736	66.287	2.253	62.796	62.369	64.622	-3.4902					129	45	5	0	0	0	0.57734	1	4797	4797		68.787	15.435	1	3255100			50445	7440	41742	41772	54662	54662					0.11053476642291571
RPRTLPPL	8	Unmodified	_RPRTLPPL_					0	0	0		ENSG00000174132|ENST00000312637|FAM174A	ENSG00000174132|ENST00000312637|FAM174A	ENSG00000174132|ENST00000312637|FAM174A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	475.300719	948.586885	1.9591	0.00093116	-2.0404	-0.00096982	-0.081348	-3.8665E-05	475.29960611088154	65.845	1.5246	62.899	62.604	64.129	-2.9459	0.10175	-0.00093282	NaN	68.787	38	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22083			50446	7440	41742	41772							0.11053476642291571
RPRTPAIES	9	Unmodified	_RPRTPAIES_					0	0	0			REV__nc|ENSG00000128159|Q96RT7-2|TUBGCP6	REV__nc|ENSG00000128159|Q96RT7-2|TUBGCP6	MULTI-MSMS	OvCa9_classI_Rep2	2	513.7882690429688	2	513.788173	1025.56179	-0.70394	-0.00036168	0.27174	0.00013962	-0.43221	-0.00022206	513.7882058006563	39.281	1.982	36.571	35.964	37.946	-2.7097					102	39	5	0	0	0	0.56889	1	1900	1900		35.618	6.4687	1	512530	+		50447	18841	41743	41773	54663	54663					0.05003377049024493
RPRTPPLI	8	Unmodified	_RPRTPPLI_					0	0	0		ENST00000468303.5_1_1:24742648-24743062:-|nuORF	ENST00000468303.5_1_1:24742648-24743062:-|nuORF	ENST00000468303.5_1_1:24742648-24743062:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	475.29925537109375	2	475.300719	948.586885	0.83712	0.00039788	-1.305	-0.00062029	-0.46792	-0.0002224	475.30006565058653	65.392	2.5484	62.696	62.21	64.758	-2.6958					145	50	5	0	0	0	0.67745	5	5019	5019;5031;5043;5055;5069		47.916	1.3541	1	2264200			50448	12325	41744	41774	54664;54665;54666;54667;54668	54664					0.11053476642291571
RPRTPPLI	8	Unmodified	_RPRTPPLI_					0	0	0		ENST00000468303.5_1_1:24742648-24743062:-|nuORF	ENST00000468303.5_1_1:24742648-24743062:-|nuORF	ENST00000468303.5_1_1:24742648-24743062:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.301513671875	2	475.300719	948.586885	-0.28648	-0.00013616	-0.17915	-8.5152E-05	-0.46563	-0.00022132	475.3005730301736	66.287	2.253	62.796	62.369	64.622	-3.4902					129	45	5	0	0	0	0.7224	2	4819	4819;4831		38.806	0	1	3255100			50449	12325	41744	41774	54669;54670	54669					0.11053476642291571
RPRTRRKD	8	Unmodified	_RPRTRRKD_					0	0	0			REV__ENSG00000089199|ENST00000378961|CHGB	REV__ENSG00000089199|ENST00000378961|CHGB	MULTI-MSMS	OvCa9_classI_Rep2	2	542.8263549804688	2	542.825955	1083.63736	-0.34066	-0.00018492	1.6549	0.0008983	1.3142	0.00071338	542.827263378176	66.666	2.0779	63.97	63.617	65.694	-2.6958					125	41	6	0	0	0	0.66992	1	5182	5182		49.442	3.4693	1	1203200	+		50450	17203	41745	41775	54671	54671					0.09888399019996541
RPRTRRSREYP	11	Unmodified	_RPRTRRSREYP_					0	0	0		ENST00000461804.5_1_3:156877890-156877995:-|nuORF	ENST00000461804.5_1_3:156877890-156877995:-|nuORF	ENST00000461804.5_1_3:156877890-156877995:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	491.94525146484375	3	491.943035	1472.80728	0.70967	0.00034912	2.9783	0.0014652	3.688	0.0018143	491.94445153692084	66.624	1.413	63.717	63.406	64.819	-2.9073					79	27	4	0	0	0	0.7246	1	2748	2748		20.837	3.004	1	253730			50451	12188	41746	41776	54672	54672					0.08978470231772917
RPRTRRSREYP	11	Unmodified	_RPRTRRSREYP_					0	0	0		ENST00000461804.5_1_3:156877890-156877995:-|nuORF	ENST00000461804.5_1_3:156877890-156877995:-|nuORF	ENST00000461804.5_1_3:156877890-156877995:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	491.943035	1472.80728	1.4753	0.00072579	2.1229	0.0010443	3.5982	0.0017701	491.944054775094	66.08	1.1915	63.384	63.071	64.263	-2.6958	-0.22773	-0.00096965	NaN	20.837	68	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146310			50452	12188	41746	41776							0.08978470231772917
RPRTRRSREYP	11	Unmodified	_RPRTRRSREYP_					0	0	0		ENST00000461804.5_1_3:156877890-156877995:-|nuORF	ENST00000461804.5_1_3:156877890-156877995:-|nuORF	ENST00000461804.5_1_3:156877890-156877995:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	491.943035	1472.80728	0.98654	0.00048532	2.8403	0.0013973	3.8269	0.0018826	491.94433504288514	67.224	0.98848	63.734	63.295	64.284	-3.4902	0.12239	8.92E-05	NaN	20.837	52	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143330			50453	12188	41746	41776							0.08978470231772917
RPRTSGPRGP	10	Unmodified	_RPRTSGPRGP_					0	0	0			REV__ENST00000270815.4_1_1:36184369-36184651:-|nuORF	REV__ENST00000270815.4_1_1:36184369-36184651:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	540.8043212890625	2	540.804688	1079.59482	-2.4915	-0.0013474	2.9764	0.0016096	0.48483	0.0002622	540.8058905637274	34.869	1.1922	32.159	31.91	33.102	-2.7097					80	23	5	0	0	0	0.61634	1	1378	1378		40.058	4.4399	1	239100	+		50454	24072	41747	41777	54673	54673					0.05821003891765031
RPRTSGPRGP	10	Unmodified	_RPRTSGPRGP_					0	0	0			REV__ENST00000270815.4_1_1:36184369-36184651:-|nuORF	REV__ENST00000270815.4_1_1:36184369-36184651:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.8049926757812	2	540.804688	1079.59482	0.050459	2.7288E-05	0.22996	0.00012437	0.28042	0.00015165	540.8047771597005	33.339	1.6874	30.644	30.352	32.039	-2.6954					106	33	4	0	0	0	0.3094	3	868	868;878;939		79.713	7.8351	1	998350	+		50455	24072	41747	41777	54674;54675;54676	54674					0.05821003891765031
RPRTVAMVM	9	2 Oxidation (M)	_RPRTVAM(Oxidation (M))VM(Oxidation (M))_		RPRTVAM(1)VM(1)		RPRTVAM(44)VM(44)	0	0	2			REV__ENSG00000116329|ENST00000234961|OPRD1	REV__ENSG00000116329|ENST00000234961|OPRD1	MULTI-MSMS	OvCa9_classI_Rep2	2	546.7862548828125	2	546.786261	1091.55797	0.94001	0.00051398	-0.8432	-0.00046105	0.096812	5.2935E-05	546.7855253614701	41.767	1.6768	39.057	38.684	40.361	-2.7097					63	33	3	0	0	0	0.48324	1	2215	2215		44.117	7.67	1	129370	+		50456	18299	41748	41778	54677	54677		423;424			0.01585247959337721
RPRTVAMVM	9	Unmodified	_RPRTVAMVM_					0	0	0			REV__ENSG00000116329|ENST00000234961|OPRD1	REV__ENSG00000116329|ENST00000234961|OPRD1	MULTI-MSMS	OvCa9_classI_Rep2	2	530.7905883789062	2	530.791346	1059.56814	-2.5847	-0.0013719	1.784	0.00094691	-0.80075	-0.00042503	530.7922153115414	62.531	1.6878	59.777	59.093	60.781	-2.7541					56	32	2	0	0	0	0.37135	1	4696	4696		54.776	0	1	272960	+		50457	18299	41748	41779	54678	54678					0.04073855684555383
RPRTVAMVM	9	Unmodified	_RPRTVAMVM_					0	0	0			REV__ENSG00000116329|ENST00000234961|OPRD1	REV__ENSG00000116329|ENST00000234961|OPRD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.7913818359375	2	530.791346	1059.56814	-1.2663	-0.00067215	0.51056	0.000271	-0.75575	-0.00040115	530.7915034200339	63.449	1.012	59.974	59.723	60.735	-3.475					38	20	2	0	0	0	0.46356	1	4467	4467		45.972	0	1	525570	+		50458	18299	41748	41779	54679	54679					0.04073855684555383
RPRVAGGHS	9	Unmodified	_RPRVAGGHS_					0	0	0			REV__nc|ENSG00000085831|Q5SRH9-3|TTC39A;REV__nc|ENSG00000085831|Q5SRH9|TTC39A	REV__nc|ENSG00000085831|Q5SRH9|TTC39A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	468.7856750488281	2	468.759749	935.504946	-0.0047657	-2.234E-06	-0.58469	-0.00027408	-0.58945	-0.00027631	468.76090657876523	79.626	0.6643	76.875	76.466	77.13	-2.7514					18	13	2	0	0	0	0.027448	1	6478	6478		20.947	0	1	19857	+		50459	28744;28745	41749	41780	54680	54680					0.03461374283187979
RPRVLALAP	9	Unmodified	_RPRVLALAP_					0	0	0		ENST00000281961.2_1_2:39893203-39931290:+|nuORF	ENST00000281961.2_1_2:39893203-39931290:+|nuORF	ENST00000281961.2_1_2:39893203-39931290:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.82196044921875	2	496.821818	991.629084	-1.3078	-0.00064975	0.50906	0.00025291	-0.79877	-0.00039684	496.8219572400303	72.317	1.3124	68.903	68.6	69.912	-3.414					68	26	4	0	0	0	0.61208	1	5567	5567		30.504	0	1	470910			50460	10052	41750	41781	54681	54681					0.13293452050641008
RPRVLTIDPTE	11	Unmodified	_RPRVLTIDPTE_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA;COPA|p.H613Tfs*3|1|0.05|ENSG00000122218|chr1:160298986-160298986|C/-|frameshift_variant	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	OvCa9_classI_Rep2	2	432.9151916503906	3	432.91386	1295.71975	-1.1041	-0.00047799	4.1539	0.0017983	3.0498	0.0013203	432.9158567399814	54.785	2.7829	51.971	51.473	54.256	-2.8139					169	55	5	0	0	0	0.68059	1	3825	3825		36.318	9.2703	1	2816800			50461	3523	41751	41782	54682	54682					0.08371831517615647
RPRVQRPAGGT	11	Unmodified	_RPRVQRPAGGT_					0	0	0			REV__ENST00000472658.1_1_1:16270013-16270353:-|nuORF	REV__ENST00000472658.1_1_1:16270013-16270353:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8441162109375	2	597.844345	1193.67414	0.16357	9.7791E-05	-1.0618	-0.00063481	-0.89827	-0.00053702	597.8439550287295	39.708	1.7287	36.754	36.268	37.997	-2.9541					97	33	4	0	0	0	0.5466	1	1685	1685		49.536	5.1589	1	512190	+		50462	26315	41752	41783	54683	54683					0.08504650845861761
RPRVRLGSEI	10	Unmodified	_RPRVRLGSEI_					0	0	0		ENSG00000185033|ENST00000411539|SEMA4B	ENSG00000185033|ENST00000411539|SEMA4B	ENSG00000185033|ENST00000411539|SEMA4B	MULTI-MSMS	OvCa9_classI_Rep4_	4	591.8555297851562	2	591.856921	1181.69929	-0.045511	-2.6936E-05	-0.40598	-0.00024028	-0.45149	-0.00026722	591.8566337031529	39.492	1.4669	36.566	36.246	37.713	-2.9264					78	28	4	0	0	0	0.65849	1	1643	1643		35.152	2.3396	1	369550			50463	8216	41753	41784	54684	54684					0.11570705648477997
RPRVTEPISA	10	Unmodified	_RPRVTEPISA_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OvCa9_classI_Rep2	2	563.32275390625	2	563.32238	1124.63021	-0.73538	-0.00041426	0.64097	0.00036107	-0.094411	-5.3184E-05	563.3225866081151	55.066	1.6417	52.252	51.722	53.364	-2.8139					84	32	4	0	0	0	0.42082	2	3817	3811;3817		65.465	15.441	1	450290			50464	2048	41754	41785	54685;54686	54686					0.07287621628893248
RPRVTEPISA	10	Unmodified	_RPRVTEPISA_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.3240966796875	2	563.32238	1124.63021	0.50277	0.00028322	-1.2952	-0.00072963	-0.79245	-0.00044641	563.3217398821847	55.481	2.0308	52.186	51.597	53.628	-3.2944					113	39	4	0	0	0	0.5635	2	3488	3488;3500		46.457	8.6453	1	1921700			50465	2048	41754	41785	54687;54688	54687					0.07287621628893248
RPRWAAPP	8	Unmodified	_RPRWAAPP_					0	0	0		ENST00000441869.5_1_11:46402650-46402776:+|nuORF	ENST00000441869.5_1_11:46402650-46402776:+|nuORF	ENST00000441869.5_1_11:46402650-46402776:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.2995910644531	2	475.769586	949.524619	1.0651	0.00050674	-1.9106	-0.00090899	-0.84548	-0.00040225	475.76839370372966	65.845	0.59775	63.149	62.771	63.368	-2.6958					21	11	3	0	0	0	0.028476	1	5062	5062		44.531	0	1	46256			50466	11933	41755	41786	54689	54689					0.04783750293927369
RPRWGALN	8	Unmodified	_RPRWGALN_					0	0	0			REV__nc|ENSG00000130294|Q12756|KIF1A	REV__nc|ENSG00000130294|Q12756|KIF1A	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.2961120605469	2	485.272493	968.530432	1.8401	0.00089294	-0.71201	-0.00034552	1.1281	0.00054743	485.27200716637674	83.91	1.183	83.91	83.12	84.303	0					34	27	3	0	0	0	0.028476	1	8720	8720		33.516	0	1	509050	+		50467	18936	41756	41787	54690	54690					0.0449084880559667
RPRYKFVG	8	Unmodified	_RPRYKFVG_					0	0	0			REV__chr4:87802558-87802654|338|14.0|0.22|6.01|+|0|IBSP,IBSP|1	REV__chr4:87802558-87802654|338|14.0|0.22|6.01|+|0|IBSP,IBSP|1	MULTI-MSMS	OvCa9_classI_Rep2	2	511.79620361328125	2	511.798343	1021.58213	-0.62141	-0.00031803	-3.5378	-0.0018106	-4.1592	-0.0021286	511.7964198016226	39.51	1.1416	36.8	36.459	37.601	-2.7097					55	22	3	0	0	0	0.7043	1	1947	1947		42.474	3.6683	1	203800	+		50468	16054	41757	41788	54691	54691					0.07220592499515988
RPSAIDELMV	10	Unmodified	_RPSAIDELMV_					0	0	0			REV__ENSG00000156858|ENST00000300835|PRR14	REV__ENSG00000156858|ENST00000300835|PRR14	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.7991333007812	2	565.797349	1129.58014	1.809	0.0010235	1.0256	0.00058028	2.8346	0.0016038	565.797875989122	35.334	1.099	32.485	32.19	33.288	-2.849					50	21	4	0	0	0	0.62299	1	1121	1121		39.253	6.4404	1	223240	+		50469	20497	41758	41789	54692	54692					0.020537509087034778
RPSAKPSVVAE	11	Unmodified	_RPSAKPSVVAE_					0	0	0		ENST00000578865.5_1_17:73623504-73624919:-|nuORF;ENST00000443199.6_1_17:73623504-73629591:-|nuORF;nc|ENSG00000108469|O94762-4|RECQL5;ENSG00000108469|ENST00000317905|RECQL5	ENST00000578865.5_1_17:73623504-73624919:-|nuORF	ENST00000578865.5_1_17:73623504-73624919:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	570.8211059570312	2	570.822212	1139.62987	-1.1076	-0.00063223	-0.082127	-4.688E-05	-1.1897	-0.00067911	570.8223947094398	83.611	2.5243	82.012	81.415	83.939	-1.5988					150	50	5	0	0	0	0.68757	1	7177	7177		33.922	3.6039	1	939080			50470	2657	41759	41790	54693	54693					0.06564201909031908
RPSAKPSVVAE	11	Unmodified	_RPSAKPSVVAE_					0	0	0		ENST00000578865.5_1_17:73623504-73624919:-|nuORF;ENST00000443199.6_1_17:73623504-73629591:-|nuORF;nc|ENSG00000108469|O94762-4|RECQL5;ENSG00000108469|ENST00000317905|RECQL5	ENST00000578865.5_1_17:73623504-73624919:-|nuORF	ENST00000578865.5_1_17:73623504-73624919:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	570.8231201171875	2	570.822212	1139.62987	1.0448	0.00059642	-1.9635	-0.0011208	-0.91869	-0.00052441	570.8212343162634	84.622	2.0327	81.959	81.594	83.627	-2.6629					120	41	4	0	0	0	0.62561	1	7131	7131		42.338	1.5599	1	1805900			50471	2657	41759	41790	54694	54694					0.06564201909031908
RPSARLLL	8	Unmodified	_RPSARLLL_					0	0	0		ENSG00000172680|ENST00000311923|MOS	ENSG00000172680|ENST00000311923|MOS	ENSG00000172680|ENST00000311923|MOS	MULTI-MSMS	OvCa9_classI_Rep2	2	463.3011169433594	2	463.300719	924.586885	-1.235	-0.00057219	1.0563	0.0004894	-0.1787	-8.2791E-05	463.30108478579115	84.367	1.9628	82.82	82.326	84.289	-1.5462					106	38	4	0	0	0	0.66057	1	7254	7254		51.335	3.4199	1	606810			50472	7312	41760	41791	54695	54695					0.12157476642289566
RPSDLNLVY	9	Unmodified	_RPSDLNLVY_					0	0	0			REV__ENST00000298875.8_1_14:92588372-92588465:+|nuORF	REV__ENST00000298875.8_1_14:92588372-92588465:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	538.7877807617188	2	538.790381	1075.56621	-1.604	-0.00086421	-1.4006	-0.00075464	-3.0046	-0.0016189	538.7894851684529	49.073	1.2378	46.313	45.829	47.067	-2.7603					49	24	3	0	0	0	0.57283	1	3084	3084		35.152	6.0025	1	114310	+		50473	24216	41761	41792	54696	54696					0.03144841471953441
RPSERPSL	8	Unmodified	_RPSERPSL_					0	0	0		ENSG00000198355|ENST00000360612|PIM3	ENSG00000198355|ENST00000360612|PIM3	ENSG00000198355|ENST00000360612|PIM3	MULTI-MSMS	OvCa9_classI_Rep2	2	471.261474609375	2	471.261791	940.509028	0.74224	0.00034979	-0.77963	-0.00036741	-0.037385	-1.7618E-05	471.26127618416797	42.586	1.0873	39.876	39.621	40.708	-2.7097					50	21	3	0	0	0	0.58851	1	2298	2298		66.429	9.7082	1	212530			50474	8809	41762	41793	54697	54697					0.03639418986244891
RPSGAPKAPLP	11	Unmodified	_RPSGAPKAPLP_					0	0	0			REV__nc|ENSG00000203706|Q5TG53|SERTAD4-AS1	REV__nc|ENSG00000203706|Q5TG53|SERTAD4-AS1	MULTI-MSMS	OvCa9_classI_Rep3	3	545.822998046875	2	545.822015	1089.62948	-1.3837	-0.00075525	0.43578	0.00023786	-0.94791	-0.00051739	545.8224822169554	85.33	1.6383	83.11	82.548	84.187	-2.2204					113	32	6	0	0	0	0.60323	1	5012	5012		44.377	1.981	1	985100	+		50475	29093	41763	41794	54698	54698					0.08824826979844147
RPSGPGPEL	9	Unmodified	_RPSGPGPEL_					0	0	0		nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2	nc|ENSG00000080503|P51531-2|SMARCA2	nc|ENSG00000080503|P51531-2|SMARCA2	MULTI-MSMS	OvCa9_classI_Rep2	2	455.24334716796875	2	455.243067	908.47158	0.8284	0.00037712	-0.70735	-0.00032202	0.12105	5.5106E-05	455.2425476957367	58.004	1.5059	55.212	54.724	56.23	-2.792					78	29	4	0	0	0	0.1804	4	4179	4164;4173;4179;4189		79.713	20.267	1	406490			50476	1636	41764	41795	54699;54700;54701;54702	54701					0.013683277206155253
RPSGPGPEL	9	Unmodified	_RPSGPGPEL_					0	0	0		nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2	nc|ENSG00000080503|P51531-2|SMARCA2	nc|ENSG00000080503|P51531-2|SMARCA2	MULTI-MSMS	OvCa9_classI_Rep4_	4	455.2441711425781	2	455.243067	908.47158	0.16097	7.3281E-05	-0.7171	-0.00032645	-0.55613	-0.00025317	455.24269794920673	58.468	1.8427	55.076	54.651	56.494	-3.392					102	36	5	0	0	0	0.1149	5	3859	3848;3859;3874;3886;3899		93.143	26.379	1	2396300			50477	1636	41764	41795	54703;54704;54705;54706;54707	54704					0.013683277206155253
RPSGPLFRQRV	11	Unmodified	_RPSGPLFRQRV_					0	0	0			REV__ITPRIPL2|p.R442Sfs*36|1|0.08|ENSG00000205730|chr16:19115786-19115787|-/CACTCTGTCACCCA|frameshift_variant	REV__ITPRIPL2|p.R442Sfs*36|1|0.08|ENSG00000205730|chr16:19115786-19115787|-/CACTCTGTCACCCA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	438.246826171875	3	438.258072	1311.75239	1.1957	0.00052403	-2.3973	-0.0010506	-1.2015	-0.00052659	438.2573078102119	43.988	0.2489	41.278	41.054	41.303	-2.7097					7	4	2	0	0	0	0.025904	1	2457	2457		36.528	13.15	1	20393	+		50478	23226	41765	41796	54708	54708					0.10898083431106897
RPSGPLPSG	9	Unmodified	_RPSGPLPSG_					0	0	0			REV__ENSG00000091536|ENST00000647165|MYO15A	REV__ENSG00000091536|ENST00000647165|MYO15A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	433.2491760253906	2	434.237784	866.461016	0.40604	0.00017632	1.7383	0.00075485	2.1444	0.00093117	434.23768069602676	51.858	0.60691	48.685	48.421	49.028	-3.1734					18	11	3	0	0	0	0.027462	1	3087	3087		20.947	0	1	10614	+		50479	17252	41766	41797	54709	54709					0.02244345066196729
RPSGPSKAL	9	Unmodified	_RPSGPSKAL_					0	0	0		nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	MULTI-MSMS	OvCa9_classI_Rep2	2	456.7668151855469	2	456.766709	911.518865	-1.0943	-0.00049982	1.1247	0.00051372	0.03042	1.3895E-05	456.76710390256716	37.466	1.7255	34.756	34.386	36.112	-2.7097					82	34	4	0	0	0	0.21231	1	1707	1707		74.255	5.4682	1	799280			50480	1922	41767	41798	54710	54710					0.05956606991605895
RPSGPSKAL	9	Unmodified	_RPSGPSKAL_					0	0	0		nc|ENSG00000095139|P48444-2|ARCN1;ENSG00000095139|ENST00000264028|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	nc|ENSG00000095139|P48444-2|ARCN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.76727294921875	2	456.766709	911.518865	0.94223	0.00043038	-1.2537	-0.00057266	-0.31149	-0.00014228	456.7661570731372	37.409	3.2302	34.517	33.894	37.124	-2.8925					138	64	4	0	0	0	0.10502	1	1387	1387		95.815	5.0385	1	3176200			50481	1922	41767	41798	54711	54711					0.05956606991605895
RPSGRKPR	8	Unmodified	_RPSGRKPR_					0	0	0		nc|ENSG00000163673|Q9C098|DCLK3;ENSG00000163673|ENST00000636136|DCLK3	nc|ENSG00000163673|Q9C098|DCLK3	nc|ENSG00000163673|Q9C098|DCLK3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.8056640625	2	477.291217	952.567881	-0.36557	-0.00017449	2.9497	0.0014079	2.5841	0.0012334	477.2924818301155	40.382	1.6123	37.428	37.162	38.775	-2.9541					60	30	4	0	0	0	0.028476	1	1837	1837		31.955	1.4512	1	149600			50482	6344	41768	41799	54712	54712					0.08969940071222027
RPSILLRN	8	Unmodified	_RPSILLRN_					0	0	0		ENST00000402198.5_1_3:9517830-9517968:+|nuORF;SETD5|p.S1370Efs*140|1|0.13|ENSG00000168137|chr3:9475869-9475870|-/GA|frameshift_variant	ENST00000402198.5_1_3:9517830-9517968:+|nuORF	ENST00000402198.5_1_3:9517830-9517968:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	484.8029479980469	2	484.803626	967.592698	0.80858	0.000392	-0.69069	-0.00033485	0.11789	5.7152E-05	484.80311931217824	65.561	1.2695	62.615	62.35	63.62	-2.9459					49	24	3	0	0	0	0.66057	1	2648	2648		51.335	10.557	1	183720			50483	11426	41769	41800	54713	54713					0.10760575153938134
RPSILLRN	8	Unmodified	_RPSILLRN_					0	0	0		ENST00000402198.5_1_3:9517830-9517968:+|nuORF;SETD5|p.S1370Efs*140|1|0.13|ENSG00000168137|chr3:9475869-9475870|-/GA|frameshift_variant	ENST00000402198.5_1_3:9517830-9517968:+|nuORF	ENST00000402198.5_1_3:9517830-9517968:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	484.803626	967.592698	0.9476	0.0004594	-0.8496	-0.00041189	0.097998	4.751E-05	484.80312207937345	65.465	0.76531	62.769	62.157	62.922	-2.6958	0.053007	-0.00033974	NaN	51.335	52	14	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123000			50484	11426	41769	41800							0.10760575153938134
RPSILLRN	8	Unmodified	_RPSILLRN_					0	0	0		ENST00000402198.5_1_3:9517830-9517968:+|nuORF;SETD5|p.S1370Efs*140|1|0.13|ENSG00000168137|chr3:9475869-9475870|-/GA|frameshift_variant	ENST00000402198.5_1_3:9517830-9517968:+|nuORF	ENST00000402198.5_1_3:9517830-9517968:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	484.803626	967.592698	-0.94815	-0.00045966	1.0235	0.00049618	0.075325	3.6518E-05	484.8039925723211	66.254	0.7287	62.764	62.272	63	-3.4902	0.047649	0.0014764	NaN	51.335	41	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117250			50485	11426	41769	41800							0.10760575153938134
RPSKQKGI	8	Unmodified	_RPSKQKGI_					0	0	0		tr|A0A7D6VUT6|A0A7D6VUT6_9CLOTTranscription-repair-couplingfactorOS=ClostridiumintestinaleOX=36845GN=mfdPE=3SV=1	tr|A0A7D6VUT6|A0A7D6VUT6_9CLOTTranscription-repair-couplingfactorOS=ClostridiumintestinaleOX=36845GN=mfdPE=3SV=1	tr|A0A7D6VUT6|A0A7D6VUT6_9CLOTTranscription-repair-couplingfactorOS=ClostridiumintestinaleOX=36845GN=mfdPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	457.2835388183594	2	457.282526	912.550499	0.26034	0.00011905	-0.65608	-0.00030001	-0.39574	-0.00018096	457.2821433033136	59.467	2.2271	56.075	55.655	57.882	-3.392					117	44	5	0	0	0	0.72896	1	3968	3968		37.159	1.5408	1	1427100			50486	35199	41770	41801	54714	54714					0.09072599745559273
RPSKVIEST	9	Unmodified	_RPSKVIEST_					0	0	0			REV__ENSG00000089048|ENST00000617257|ESF1	REV__ENSG00000089048|ENST00000617257|ESF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.78887939453125	2	508.790381	1015.56621	-0.75904	-0.00038619	0.72071	0.00036669	-0.038331	-1.9503E-05	508.7906131362344	48.342	1.4441	45.234	44.632	46.076	-3.1077					36	27	2	0	0	0	0.027462	1	2691	2691		21.96	15.647	1	39126	+		50487	17195	41771	41802	54715	54715					0.05904841471965483
RPSKVIEST	9	Unmodified	_RPSKVIEST_					0	0	0			REV__ENSG00000089048|ENST00000617257|ESF1	REV__ENSG00000089048|ENST00000617257|ESF1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	508.790381	1015.56621	-0.84883	-0.00043187	-0.8352	-0.00042494	-1.684	-0.00085682	508.7903800339202	48.012	0.69268	45.303	44.836	45.529	-2.7097	0.034405	-0.0013642	NaN	29.15	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13827	+		50488	17195	41771	41802							0.05904841471965483
RPSLALDQGLA	11	Unmodified	_RPSLALDQGLA_					0	0	0			REV__chr6:152011794-152020476|270|14.8|0.11|7.11|+|0|ESR1,None|2	REV__chr6:152011794-152020476|270|14.8|0.11|7.11|+|0|ESR1,None|2	MULTI-MSMS	OvCa9_classI_Rep4_	4	570.823486328125	2	570.822212	1139.62987	1.0448	0.00059642	-1.9635	-0.0011208	-0.91869	-0.00052441	570.8212343162634	84.622	2.0327	81.959	81.594	83.627	-2.6629					120	41	4	0	0	0	0.36705	1	7094	7094		63.534	1.4264	1	1805900	+		50489	16071	41772	41803	54716	54716					0.06564201909031908
RPSLALRL	8	Unmodified	_RPSLALRL_					0	0	0			REV__ENST00000269593.4_1_17:38613016-38613178:+|nuORF	REV__ENST00000269593.4_1_17:38613016-38613178:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	463.3007507324219	2	463.300719	924.586885	-1.235	-0.00057219	1.0563	0.0004894	-0.1787	-8.2791E-05	463.30108478579115	84.367	1.9628	82.82	82.326	84.289	-1.5462					106	38	4	0	0	0	0.47824	1	7265	7265		79.713	5.4575	1	606810	+		50490	24066	41773	41804	54717	54717					0.12157476642266829
RPSLALSWRLS	11	Unmodified	_RPSLALSWRLS_					0	0	0			REV__ENST00000450185.5_1_2:73228706-73298794:-|nuORF	REV__ENST00000450185.5_1_2:73228706-73298794:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	429.2513732910156	3	429.250695	1284.73025	-0.56405	-0.00024212	0.10645	4.5692E-05	-0.45761	-0.00019643	429.25076321988007	91.88	1.9808	89.856	89.534	91.514	-2.0241					135	40	5	0	0	0	0.67389	1	5794	5794		37.94	2.444	1	3207800	+		50491	25957	41774	41805	54718	54718					0.09927858962691971
RPSLALSWRLS	11	Unmodified	_RPSLALSWRLS_					0	0	0			REV__ENST00000450185.5_1_2:73228706-73298794:-|nuORF	REV__ENST00000450185.5_1_2:73228706-73298794:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	429.25201416015625	3	429.250695	1284.73025	-0.16477	-7.0726E-05	-0.40738	-0.00017487	-0.57215	-0.0002456	429.25055952438805	92.339	1.6895	89.796	89.415	91.104	-2.5425					123	33	5	0	0	0	0.60035	1	8016	8016		44.639	10.553	1	2879600	+		50492	25957	41774	41805	54719	54719					0.09927858962691971
RPSLALSWRLS	11	Unmodified	_RPSLALSWRLS_					0	0	0			REV__ENST00000450185.5_1_2:73228706-73298794:-|nuORF	REV__ENST00000450185.5_1_2:73228706-73298794:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	643.3748779296875	2	643.372404	1284.73025	-0.42564	-0.00027384	0.23787	0.00015304	-0.18777	-0.0001208	643.3725031128389	92.341	1.5107	89.798	89.466	90.976	-2.5425					96	29	5	0	0	0	0.38584	1	8023	8023		70.816	9.1249	1	1009000	+		50493	25957	41774	41805	54720	54720					0.09927858962691971
RPSLELRRCP	10	Unmodified	_RPSLELRRCP_					0	0	0		ENST00000600534.1_1_19:59084484-59085060:+|nuORF	ENST00000600534.1_1_19:59084484-59085060:+|nuORF	ENST00000600534.1_1_19:59084484-59085060:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	613.843994140625	2	613.842956	1225.67136	0.44639	0.00027401	4.0722	0.0024997	4.5186	0.0027737	613.8454693997087	61.199	1.9887	57.769	57.395	59.384	-3.43					134	40	6	0	0	0	0.58067	3	4169	4169;4213;4226		44.377	7.9304	1	3122600			50494	14217	41775	41806	54721;54722;54723	54721					0.06755059396732577
RPSLFVLSPIK	11	Unmodified	_RPSLFVLSPIK_					0	0	0		nc|ENSG00000171992|Q8N3V7-3|SYNPO;ENSG00000171992|ENST00000307662|SYNPO;nc|ENSG00000171992|Q8N3V7|SYNPO	nc|ENSG00000171992|Q8N3V7-3|SYNPO	nc|ENSG00000171992|Q8N3V7-3|SYNPO	MSMS	OvCa99_classI_Rep5	1	628.8896484375	2	628.889898	1255.76524	NaN	NaN	NaN	NaN	NaN	NaN	NaN	163.83	1	163.83	163.33	164.33	0								0	0	0	0.19474	1	19134	19134		17.468	1.8262	1				50495	7258	41776	41807	54724	54724					0.14759101770641792
RPSLLLVG	8	Unmodified	_RPSLLLVG_					0	0	0			REV__ENST00000340954.11_1_20:47795674-47804881:-|nuORF	REV__ENST00000340954.11_1_20:47795674-47804881:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	426.9310302734375	2	427.776545	853.538538	-1.6828	-0.00071984	1.787	0.00076442	0.10422	4.4583E-05	427.7771866265814	61.72	0.76155	58.961	58.672	59.434	-2.7593					26	14	2	0	0	0	0.028476	1	4603	4603		13.775	0	1	25980	+		50496	24630	41777	41808	54725	54725					0.10590983002373378
RPSLLTRA	8	Unmodified	_RPSLLTRA_					0	0	0		ENSG00000243978|ENST00000520821|RTL9	ENSG00000243978|ENST00000520821|RTL9	ENSG00000243978|ENST00000520821|RTL9	MULTI-MSMS	OvCa9_classI_Rep2	2	457.2825012207031	2	457.282526	912.550499	0.47425	0.00021687	-0.49128	-0.00022466	-0.017036	-7.7904E-06	457.2821592199895	58.808	2.4649	56.028	55.184	57.649	-2.7801					125	47	5	0	0	0	0.73494	1	4276	4276		34.173	5.023	1	550990			50497	9387	41778	41809	54726	54726					0.09072599745559273
RPSLPQLSGL	10	Unmodified	_RPSLPQLSGL_					0	0	0			REV__ENST00000479961.1_3_15:80181695-80215979:-|nuORF	REV__ENST00000479961.1_3_15:80181695-80215979:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	533.347412109375	2	534.314023	1066.61349	-0.8053	-0.00043028	4.4355	0.0023699	3.6302	0.0019397	534.3159289215064	93.078	0.92067	91.91	91.55	92.471	-1.168					27	17	3	0	0	0	0.026803	1	8273	8273		47.96	5.0953	1	38089	+		50498	26445	41779	41810	54727	54727					0.08285120742948493
RPSLRALLL	9	Unmodified	_RPSLRALLL_					0	0	0		nc|ENSG00000163453|Q16270-2|IGFBP7;ENSG00000163453|ENST00000295666|IGFBP7	nc|ENSG00000163453|Q16270-2|IGFBP7	nc|ENSG00000163453|Q16270-2|IGFBP7	MULTI-MSMS	OvCa9_classI_Rep2	2	519.8423461914062	2	519.842751	1037.67095	-0.88384	-0.00045946	0.11636	6.0491E-05	-0.76748	-0.00039897	519.8428313366139	101.51	3.954	100.74	100.32	104.27	-0.76401					201	79	5	0	0	0	0.22621	2	9321	9321;9360		71.877	9.1707	1	2123700			50499	6307	41780	41811	54728;54729	54728					0.15362007739167893
RPSLRALLL	9	Unmodified	_RPSLRALLL_					0	0	0		nc|ENSG00000163453|Q16270-2|IGFBP7;ENSG00000163453|ENST00000295666|IGFBP7	nc|ENSG00000163453|Q16270-2|IGFBP7	nc|ENSG00000163453|Q16270-2|IGFBP7	MULTI-MSMS	OvCa9_classI_Rep3	3	519.8421020507812	2	519.842751	1037.67095	0.40121	0.00020857	-1.3083	-0.0006801	-0.90707	-0.00047153	519.8420343224896	103.51	3.443	102.08	101.71	105.15	-1.4347					193	65	5	0	0	0	0.1804	4	7216	7156;7216;7229;7246		79.713	6.8333	1	1720200			50500	6307	41780	41811	54730;54731;54732;54733	54731					0.15362007739167893
RPSLRALLL	9	Unmodified	_RPSLRALLL_					0	0	0		nc|ENSG00000163453|Q16270-2|IGFBP7;ENSG00000163453|ENST00000295666|IGFBP7	nc|ENSG00000163453|Q16270-2|IGFBP7	nc|ENSG00000163453|Q16270-2|IGFBP7	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.8418579101562	2	519.842751	1037.67095	-0.72199	-0.00037532	-0.072479	-3.7677E-05	-0.79447	-0.000413	519.8426952979958	104.34	3.079	102.22	101.85	104.93	-2.1192					170	59	5	0	0	0	0.38969	1	9512	9512		52.937	8.8199	1	1694100			50501	6307	41780	41811	54734	54734					0.15362007739167893
RPSLRAPG	8	Unmodified	_RPSLRAPG_					0	0	0			REV__ENST00000484115.5_1_3:49027419-49028262:+|nuORF	REV__ENST00000484115.5_1_3:49027419-49028262:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	427.2530517578125	2	427.253769	852.492984	-1.369	-0.00058491	1.6643	0.00071106	0.29526	0.00012615	427.254318949799	38.75	1.1373	36.041	35.816	36.953	-2.7097					54	22	3	0	0	0	0.73205	1	1829	1829		35.618	0	1	356560	+		50502	26543	41781	41812	54735	54735					0.0608375753998871
RPSLRTLTF	9	Unmodified	_RPSLRTLTF_					0	0	0		ENSG00000112837|ENST00000369663|TBX18	ENSG00000112837|ENST00000369663|TBX18	ENSG00000112837|ENST00000369663|TBX18	MULTI-MSMS	OvCa9_classI_Rep2	2	545.8208618164062	2	545.822015	1089.62948	-1.0728	-0.00058556	0.5676	0.00030981	-0.50521	-0.00027575	545.822343651499	84.091	2.1648	82.545	82.223	84.388	-1.5462					84	42	4	0	0	0	0.37135	1	7235	7235		54.776	10.66	1	714100			50503	2930	41782	41813	54736	54736					0.0882482697982141
RPSLSLKKKKK	11	Unmodified	_RPSLSLKKKKK_					0	0	0		AluJr4_dup16917|chr16:69374357-69374684:+|2.433971777808144|0.0235263945213815|6.69|429.0|11|3|sense	AluJr4_dup16917|chr16:69374357-69374684:+|2.433971777808144|0.0235263945213815|6.69|429.0|11|3|sense	AluJr4_dup16917|chr16:69374357-69374684:+|2.433971777808144|0.0235263945213815|6.69|429.0|11|3|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	438.24822998046875	3	438.297756	1311.87144	-0.9349	-0.00040976	-0.67096	-0.00029408	-1.6059	-0.00070384	438.297715318595	44.071	0.19662	41.063	40.891	41.088	-3.0074					5	3	2	0	0	0	0.02625	1	2140	2140		18.531	12.21	1	8290.2			50504	69	41783	41814	54737	54737					0.22797857335945082
RPSPDLWAYL	10	Unmodified	_RPSPDLWAYL_					0	0	0		ENST00000482384.1_1_1:109757275-109757329:+|nuORF	ENST00000482384.1_1_1:109757275-109757329:+|nuORF	ENST00000482384.1_1_1:109757275-109757329:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	609.31591796875	2	609.319306	1216.62406	0.65212	0.00039735	-4.4854	-0.002733	-3.8333	-0.0023357	609.3164322683887	65.674	1.8932	62.978	62.469	64.362	-2.6958					117	37	5	0	0	0	0.48198	1	5065	5065		56.721	1.9447	1	585240			50505	12569	41784	41815	54738	54738					0.02441103397381994
RPSPDLWAYL	10	Unmodified	_RPSPDLWAYL_					0	0	0		ENST00000482384.1_1_1:109757275-109757329:+|nuORF	ENST00000482384.1_1_1:109757275-109757329:+|nuORF	ENST00000482384.1_1_1:109757275-109757329:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	609.3184204101562	2	609.319306	1216.62406	0.12677	7.7244E-05	-3.8068	-0.0023196	-3.68	-0.0022423	609.3168780071545	66.565	1.9139	63.075	62.612	64.526	-3.4902					83	38	4	0	0	0	0.6104	1	4856	4856		40.778	2.9666	1	950700			50506	12569	41784	41815	54739	54739					0.02441103397381994
RPSPLLALVSA	11	Unmodified	_RPSPLLALVSA_					0	0	0			REV__ENST00000033079.7_2_5:137356801-137368637:-|nuORF	REV__ENST00000033079.7_2_5:137356801-137368637:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	562.341796875	2	562.345323	1122.67609	-2.9015	-0.0016316	-0.70711	-0.00039764	-3.6086	-0.0020293	562.3448419475409	142.33	4.504	141.32	140	144.5	-1.0106					205	90	3	0	0	0	0.72479	1	11947	11947		18.262	0	1	106680	+		50507	23673	41785	41816	54740	54740					0.11966266811123205
RPSQGRTLIT	10	Unmodified	_RPSQGRTLIT_					0	0	0		ENST00000533441.1_1_11:65483933-65484029:+|nuORF	ENST00000533441.1_1_11:65483933-65484029:+|nuORF	ENST00000533441.1_1_11:65483933-65484029:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	564.8273315429688	2	564.827829	1127.64111	-0.78673	-0.00044437	0.97689	0.00055177	0.19016	0.00010741	564.8281356979684	55.822	1.7837	53.018	52.731	54.515	-2.804					83	35	4	0	0	0	0.53807	1	3918	3918		49.536	7.0616	1	335610			50508	13340	41786	41817	54741	54741					0.08239024003182749
RPSQKPFPL	9	Unmodified	_RPSQKPFPL_					0	0	0		ENST00000336095.10_1_20:3913981-3914098:-|nuORF	ENST00000336095.10_1_20:3913981-3914098:-|nuORF	ENST00000336095.10_1_20:3913981-3914098:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	535.3114013671875	2	535.311284	1068.60801	0.40807	0.00021844	1.7716	0.00094837	2.1797	0.0011668	535.3121232088946	114.75	0.51058	114.75	114.51	115.02	0					17	10	2	0	0	0	0.44294	1	13128	13128		47.916	0.25827	1	145800			50509	10508	41787	41818	54742	54742					0.07645441951149223
RPSQNLLQL	9	Unmodified	_RPSQNLLQL_					0	0	0		nc|ENSG00000104973|Q71SY5-6|MED25;nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25;ENST00000594998.1_1_19:50338170-50339752:+|nuORF	nc|ENSG00000104973|Q71SY5-6|MED25	nc|ENSG00000104973|Q71SY5-6|MED25	MULTI-MSMS	OvCa9_classI_Rep2	2	534.811279296875	2	534.811648	1067.60874	0.086004	4.5996E-05	-0.75568	-0.00040415	-0.66967	-0.00035815	534.8111784323548	91.527	2.091	90.291	89.795	91.886	-1.2355					103	38	4	0	0	0	0.12515	4	8140	8106;8110;8129;8140		90.37	10.118	1	1349900			50510	2413	41788	41819	54743;54744;54745;54746	54746					0.07764236600178265
RPSQNLLQL	9	Unmodified	_RPSQNLLQL_					0	0	0		nc|ENSG00000104973|Q71SY5-6|MED25;nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25;ENST00000594998.1_1_19:50338170-50339752:+|nuORF	nc|ENSG00000104973|Q71SY5-6|MED25	nc|ENSG00000104973|Q71SY5-6|MED25	MULTI-MSMS	OvCa9_classI_Rep3	3	534.810791015625	2	534.811648	1067.60874	-0.41858	-0.00022386	-1.4796	-0.00079128	-1.8981	-0.0010151	534.8107466727284	92.27	1.7258	90.246	89.839	91.565	-2.0241					96	35	4	0	0	0	0.1149	4	5848	5842;5848;5856;5862		93.143	4.4867	1	2468600			50511	2413	41788	41819	54747;54748;54749;54750	54748					0.07764236600178265
RPSQNLLQL	9	Unmodified	_RPSQNLLQL_					0	0	0		nc|ENSG00000104973|Q71SY5-6|MED25;nc|ENSG00000104973|Q71SY5-5|MED25;ENSG00000104973|ENST00000312865|MED25;nc|ENSG00000104973|Q71SY5-4|MED25;ENST00000594998.1_1_19:50338170-50339752:+|nuORF	nc|ENSG00000104973|Q71SY5-6|MED25	nc|ENSG00000104973|Q71SY5-6|MED25	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.8121948242188	2	534.811648	1067.60874	-1.804	-0.0009648	0.81471	0.00043572	-0.98929	-0.00052909	534.8120810621485	92.846	1.3887	90.339	89.959	91.348	-2.5072					76	28	4	0	0	0	0.1149	3	8076	8076;8088;8100		93.143	15.558	1	2073700			50512	2413	41788	41819	54751;54752;54753	54751					0.07764236600178265
RPSQRLLF	8	Unmodified	_RPSQRLLF_					0	0	0			REV__ENST00000333957.8_1_12:22697022-22697471:-|nuORF	REV__ENST00000333957.8_1_12:22697022-22697471:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	508.80377197265625	2	508.803626	1015.5927	-0.69441	-0.00035332	0.43441	0.00022103	-0.26	-0.00013229	508.8040274066388	74.555	1.1447	72.584	72.114	73.259	-1.9711					65	21	5	0	0	0	0.66992	1	6100	6100		49.442	3.4693	1	1109800	+		50513	24558	41789	41820	54754	54754					0.08552575153942144
RPSRARRRQ	9	Unmodified	_RPSRARRRQ_					0	0	0		sp|P16788|UL97_HCMVASerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL97PE=1SV=1;sp|Q6SW46|UL97_HCMVMSerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL97PE=3SV=1	sp|P16788|UL97_HCMVASerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL97PE=1SV=1	sp|P16788|UL97_HCMVASerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL97PE=1SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	591.857177734375	2	591.855578	1181.6966	-1.0559	-0.00062492	3.3001	0.0019532	2.2442	0.0013282	591.8573910777626	39.473	1.2899	36.763	36.459	37.749	-2.7097					73	25	4	0	0	0	0.51865	1	1954	1954		40.778	2.9666	1	212370			50514	32900	41790	41821	54755	54755					0.11302295034170129
RPSRLEPS	8	Unmodified	_RPSRLEPS_					0	0	0			REV__ENST00000452392.2_1_6:32806431-32806500:-|nuORF	REV__ENST00000452392.2_1_6:32806431-32806500:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.2618713378906	2	471.261791	940.509028	-0.33325	-0.00015705	-0.25916	-0.00012213	-0.59241	-0.00027918	471.2615896536289	42.834	1.1541	39.827	39.539	40.693	-3.0074					55	21	3	0	0	0	0.56195	2	2019	2008;2019		71.296	15.791	1	1011100	+		50515	25980	41791	41822	54756;54757	54757					0.036394189862335224
RPSRLGPA	8	Unmodified	_RPSRLGPA_					0	0	0			REV__ENST00000380262.7_1_17:7847547-7849136:+|nuORF	REV__ENST00000380262.7_1_17:7847547-7849136:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	427.2539367675781	2	427.253769	852.492984	0.47927	0.00020477	-0.70424	-0.00030089	-0.22497	-9.6119E-05	427.25343840755255	38.849	1.9995	35.923	35.502	37.502	-2.9264					103	39	4	0	0	0	0.67745	1	1600	1600		47.916	0	1	1592600	+		50516	25177	41792	41823	54758	54758					0.0608375753998871
RPSRLLLA	8	Unmodified	_RPSRLLLA_					0	0	0			REV__ENST00000545932.5_1_12:108956374-108956593:+|nuORF	REV__ENST00000545932.5_1_12:108956374-108956593:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	463.3006591796875	2	463.300719	924.586885	-1.235	-0.00057219	1.0563	0.0004894	-0.1787	-8.2791E-05	463.30108478579115	84.367	1.9628	82.82	82.326	84.289	-1.5462					106	38	4	0	0	0	0.66057	1	7278	7278		51.335	5.3835	1	606810	+		50517	19348	41793	41824	54759	54759					0.12157476642278198
RPSRLLLRG	9	Unmodified	_RPSRLLLRG_					0	0	0		ENST00000399537.8_1_7:5347331-5347724:-|nuORF	ENST00000399537.8_1_7:5347331-5347724:-|nuORF	ENST00000399537.8_1_7:5347331-5347724:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	534.3429565429688	2	534.343449	1066.67235	1.9733	0.0010544	-1.9799	-0.0010579	-0.0065619	-3.5063E-06	534.3423036869325	64.763	1.4145	61.77	61.395	62.809	-2.9933					70	27	3	0	0	0	0.53483	1	2582	2582		39.253	6.4404	1	193540			50518	11393	41794	41825	54760	54760					0.14167641827953048
RPSRRLLDL	9	Unmodified	_RPSRRLLDL_					0	0	0		ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	MULTI-MSMS	OvCa9_classI_Rep3	3	563.3490600585938	2	563.346189	1124.67783	-0.74417	-0.00041923	3.8494	0.0021686	3.1053	0.0017493	563.3482843172422	89.471	1.7706	87.368	86.826	88.596	-2.1029					104	34	4	0	0	0	0.38969	1	5510	5510		52.937	8.8199	1	680300			50519	4923	41795	41826	54761	54761					0.12047320619763013
RPSSRKTI	8	Unmodified	_RPSSRKTI_					0	0	0			REV__chr10:5773941-5783324|88|60.59|0.56|6.74|-|2|TE_info:L1PBa,L1PBa_dup1536,L1,LINE,donor,-,5783324,5784958|GDI2,None|16	REV__chr10:5773941-5783324|88|60.59|0.56|6.74|-|2|TE_info:L1PBa,L1PBa_dup1536,L1,LINE,donor,-,5783324,5784958|GDI2,None|16	MULTI-MSMS	OvCa9_classI_Rep2	2	472.7844543457031	2	472.785433	943.556313	1.3192	0.0006237	-1.3249	-0.0006264	-0.0057136	-2.7013E-06	472.78465285146206	29.187	1.0318	26.478	26.18	27.212	-2.7097					38	21	3	0	0	0	0.73205	1	705	705		35.618	7.736	1	56287	+		50520	15848	41796	41827	54762	54762					0.08227698257235261
RPSSSRSYV	9	Unmodified	_RPSSSRSYV_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa9_classI_Rep2	2	519.7717895507812	2	519.76998	1037.52541	-2.1715	-0.0011287	1.758	0.00091377	-0.4135	-0.00021493	519.7707170403313	35.934	0.74412	33.224	33.001	33.745	-2.7097					30	14	3	0	0	0	0.56889	1	1495	1495		35.618	0	1	60969			50521	1049	41797	41828	54763	54763					0.008145001523189421
RPSSSRSYVTT	11	Unmodified	_RPSSSRSYVTT_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa9_classI_Rep2	2	620.8179931640625	2	620.817658	1239.62076	-1.695	-0.0010523	1.3618	0.00084543	-0.3332	-0.00020685	620.818422631297	38.889	1.3375	36.18	35.915	37.252	-2.7097					75	26	4	0	0	0	0.6112	1	1848	1848		43.651	7.204	1	501820			50522	1049	41798	41829	54764	54764					0.010538085527059593
RPSSSRSYVTT	11	Unmodified	_RPSSSRSYVTT_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa9_classI_Rep4_	4	620.8179321289062	2	620.817658	1239.62076	-0.0017921	-1.1125E-06	-0.48774	-0.0003028	-0.48954	-0.00030391	620.8173961382302	38.899	2.1681	35.973	35.7	37.868	-2.9264					130	42	5	0	0	0	0.22834	3	1550	1550;1561;1573		76.17	12.863	1	2444800			50523	1049	41798	41829	54765;54766;54767	54765					0.010538085527059593
RPSSTITYL	9	Unmodified	_RPSSTITYL_					0	0	0		ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	ENSG00000159596|ENST00000372025|TMEM69	MSMS	OvCa9_classI_Rep4_	4	519.2881469726562	2	519.284931	1036.55531	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.291	1	75.475	74.975	75.975	-2.8165								0	0	0	0.16939	1	6299	6299		52.937	8.5595	1				50524	6020	41799	41830	54768	54768					0.03849439097643881
RPSSVRLV	8	Unmodified	_RPSSVRLV_					0	0	0			REV__ENST00000594348.1_1_19:8429070-8436049:+|nuORF	REV__ENST00000594348.1_1_19:8429070-8436049:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	457.2820739746094	2	457.282526	912.550499	0.47425	0.00021687	-0.49128	-0.00022466	-0.017036	-7.7904E-06	457.2821592199895	58.808	2.4649	56.028	55.184	57.649	-2.7801					125	47	5	0	0	0	0.65062	2	4233	4233;4240		53.351	11.304	1	550990	+		50525	27980	41800	41831	54769;54770	54769					0.09072599745570642
RPSTLNAGSL	10	Unmodified	_RPSTLNAGSL_					0	0	0			REV__ENSG00000167978|ENST00000301740|SRRM2	REV__ENSG00000167978|ENST00000301740|SRRM2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.8019714355469	2	508.28018	1014.54581	-1.238	-0.00062926	1.6339	0.0008305	0.39592	0.00020124	508.2807789360317	55.28	1.2249	51.985	51.392	52.617	-3.2944					44	23	3	0	0	0	0.026577	1	3425	3425		58.23	0	1	297780	+		50526	21327	41801	41832	54771	54771					0.03911670812135526
RPSTNSPSP	9	Unmodified	_RPSTNSPSP_					0	0	0		ENST00000356763.7_1_3:130465222-130465342:-|nuORF	ENST00000356763.7_1_3:130465222-130465342:-|nuORF	ENST00000356763.7_1_3:130465222-130465342:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.26092529296875	2	471.735606	941.456658	-0.25455	-0.00012008	1.2428	0.00058627	0.98825	0.00046619	471.736090416343	42.556	0.41758	39.575	39.41	39.828	-2.9804					11	7	2	0	0	0	0.027447	1	2008	2008		66.429	22.312	1	25720			50527	10702	41802	41833	54772	54772					-0.016411641473723648
RPSTQHSRA	9	Unmodified	_RPSTQHSRA_					0	0	0			REV__ENST00000459741.5_1_21:45508322-45508496:+|nuORF	REV__ENST00000459741.5_1_21:45508322-45508496:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.8423461914062	2	520.273221	1038.53189	-0.90382	-0.00047023	2.297	0.0011951	1.3932	0.00072483	520.7763472059949	101.72	0.29696	100.96	100.77	101.06	-0.76401					8	5	2	0	0	0	0.027432	1	9327	9327		58.23	0	1	14284	+		50528	26065	41803	41834	54773	54773					0.014164381037062412
RPSTSRSL	8	Unmodified	_RPSTSRSL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa9_classI_Rep2	2	452.25384521484375	2	452.253966	902.493378	0.86129	0.00038952	-0.9954	-0.00045017	-0.13411	-6.065E-05	452.2534208986577	33.657	1.7812	30.947	30.722	32.503	-2.7097					88	35	4	0	0	0	0.45246	7	1221	1215;1221;1227;1234;1240;1246;1258		82.305	18.999	1	1170300			50529	1049	41804	41835	54774;54775;54776;54777;54778;54779;54780	54775					0.03823132469176471
RPSTSRSL	8	Unmodified	_RPSTSRSL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa9_classI_Rep4_	4	452.2543640136719	2	452.253966	902.493378	0.61622	0.00027869	-0.44946	-0.00020327	0.16675	7.5416E-05	452.25355541518655	21.533	1.7415	20.194	19.77	21.512	-1.3386					84	35	3	0	0	0	0.73494	1	199	199		34.173	3.6689	1	281670			50530	1049	41804	41835	54781	54781					0.03823132469176471
RPSVAIRRL	9	Unmodified	_RPSVAIRRL_					0	0	0			REV__ENST00000470294.5_1_1:155057995-155058385:+|nuORF	REV__ENST00000470294.5_1_1:155057995-155058385:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	534.3441162109375	2	534.343449	1066.67235	1.9733	0.0010544	-1.9799	-0.0010579	-0.0065619	-3.5063E-06	534.3423036869325	64.763	1.4145	61.77	61.395	62.809	-2.9933					70	27	3	0	0	0	0.64427	1	2569	2569		26.693	1.1189	1	193540	+		50531	26258	41805	41836	54782	54782					0.14167641827953048
RPSVFRANT	9	Unmodified	_RPSVFRANT_					0	0	0			REV__ENST00000435880.6_1_2:70189834-70190005:-|nuORF	REV__ENST00000435880.6_1_2:70189834-70190005:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.3046875	2	524.28834	1046.56213	-0.52994	-0.00027784	1.3145	0.00068918	0.78456	0.00041134	524.2886904110816	47.797	0.79221	45.088	44.786	45.578	-2.7097					18	14	2	0	0	0	0.027462	1	2947	2947		18.262	0	1	30312	+		50532	25775	41806	41837	54783	54783					0.04070796768905893
RPSVKPDQL	9	Unmodified	_RPSVKPDQL_					0	0	0			REV__PLA2G3|p.M333K|1|0.03|ENSG00000100078|chr22:31137778-31137778|A/T|missense_variant	REV__PLA2G3|p.M333K|1|0.03|ENSG00000100078|chr22:31137778-31137778|A/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.8430786132812	2	520.298373	1038.58219	0.11258	5.8575E-05	3.3853	0.0017614	3.4979	0.0018199	520.2998114461958	103.22	0.579	101.79	101.55	102.13	-1.4347					18	10	2	0	0	0	0.027358	1	7168	7168		56.434	15.007	1	25046	+		50533	29300	41807	41838	54784	54784					0.06444547708861137
RPSVKPDQL	9	Unmodified	_RPSVKPDQL_					0	0	0			REV__PLA2G3|p.M333K|1|0.03|ENSG00000100078|chr22:31137778-31137778|A/T|missense_variant	REV__PLA2G3|p.M333K|1|0.03|ENSG00000100078|chr22:31137778-31137778|A/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.8422241210938	2	520.298373	1038.58219	-0.84931	-0.00044189	3.9288	0.0020442	3.0795	0.0016023	520.300263195318	103.88	0.94466	101.76	101.43	102.38	-2.1192					26	17	2	0	0	0	0.027309	1	9429	9429		70.816	0	1	27381	+		50534	29300	41807	41838	54785	54785					0.06444547708861137
RPSVRLVS	8	Unmodified	_RPSVRLVS_					0	0	0			REV__nc|ENSG00000148290|Q15526-2|SURF1	REV__nc|ENSG00000148290|Q15526-2|SURF1	MULTI-MSMS	OvCa9_classI_Rep2	2	457.282470703125	2	457.282526	912.550499	0.47425	0.00021687	-0.49128	-0.00022466	-0.017036	-7.7904E-06	457.2821592199895	58.808	2.4649	56.028	55.184	57.649	-2.7801					125	47	5	0	0	0	0.72896	1	4246	4246		37.159	1.5408	1	550990	+		50535	20097	41808	41839	54786	54786					0.09072599745570642
RPSVRSVL	8	Unmodified	_RPSVRSVL_					0	0	0		ENST00000480964.5_1_7:44801441-44805210:+|nuORF;ENST00000478045.5_1_7:44801192-44807219:+|nuORF;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2;ZMIZ2|p.I660Rfs*6|1|0.03|ENSG00000122515|chr7:44764988-44764989|-/CAGGGTCATCT|frameshift_variant;ZMIZ2|p.G659Vfs*11|1|0.04|ENSG00000122515|chr7:44764987-44764988|-/TTAT|frameshift_variant;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;ENSG00000108175|ENST00000334512|ZMIZ1	ENST00000480964.5_1_7:44801441-44805210:+|nuORF;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	ENST00000480964.5_1_7:44801441-44805210:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	457.2827453613281	2	457.282526	912.550499	0.47425	0.00021687	-0.49128	-0.00022466	-0.017036	-7.7904E-06	457.2821592199895	58.808	2.4649	56.028	55.184	57.649	-2.7801					125	47	5	0	0	0	0.62474	1	4228	4228		58.782	9.3404	1	550990			50536	3538;2639	41809	41840	54787	54787					0.09072599745559273
RPTAAPPAP	9	Unmodified	_RPTAAPPAP_					0	0	0		ENSG00000182218|ENST00000330710|HHIPL1	ENSG00000182218|ENST00000330710|HHIPL1	ENSG00000182218|ENST00000330710|HHIPL1	MULTI-MSMS	OvCa9_classI_Rep2	2	439.248046875	2	439.248152	876.481751	-0.24789	-0.00010888	0.38414	0.00016873	0.13626	5.985E-05	439.2481798597059	51.725	1.6844	48.913	48.203	49.888	-2.8129					75	33	4	0	0	0	0.36502	1	3414	3414		55.504	0	1	208270			50537	7981	41810	41841	54788	54788					0.03856935445844556
RPTDKPLRL	9	Unmodified	_RPTDKPLRL_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENSG00000101210|ENST00000217182|EEF1A2	nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000101210|ENST00000217182|EEF1A2	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	OvCa9_classI_Rep2	2	548.3342895507812	2	548.33529	1094.65603	-0.67354	-0.00036933	0.0061222	3.357E-06	-0.66742	-0.00036597	548.3353349433302	49.062	1.6355	46.302	45.879	47.514	-2.7603					116	32	5	0	0	0	0.012163	13	3069	3059;3063;3069;3075;3081;3087;3093;3099;3105;3118;3131;3138;3145		161.9	63.269	1	2328000			50538	5844;2151	41811	41842	54789;54790;54791;54792;54793;54794;54795;54796;54797;54798;54799;54800;54801	54791					0.11248515871170639
RPTDKPLRL	9	Unmodified	_RPTDKPLRL_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENST00000436459.2_1_9:135895553-135896258:+|nuORF;ENSG00000101210|ENST00000217182|EEF1A2	nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000101210|ENST00000217182|EEF1A2	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.3360595703125	2	548.33529	1094.65603	-2.4094	-0.0013212	1.4581	0.0007995	-0.95134	-0.00052166	548.3361071245757	49.542	1.7074	46.4	46.095	47.803	-3.1416					106	32	5	0	0	0	0.018335	5	2798	2786;2798;2810;2822;2836		148.99	55.791	1	1828200			50539	5844;2151	41811	41842	54802;54803;54804;54805;54806	54803					0.11248515871170639
RPTELCQW	8	Unmodified	_RPTELCQW_					0	0	0			REV__ENST00000589360.1_1_19:3544323-3544383:+|nuORF	REV__ENST00000589360.1_1_19:3544323-3544383:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	516.302978515625	2	516.750201	1031.48585	-1.4968	-0.00077348	3.1593	0.0016326	1.6625	0.00085909	516.7517065732068	62.162	1.6888	59.402	58.829	60.518	-2.7593					37	32	2	0	0	0	0.028476	1	4655	4655		35.618	0	1	40067	+		50540	27907	41812	41843	54807	54807					-0.02863343122749029
RPTFQQICSF	10	Unmodified	_RPTFQQICSF_					0	0	0		ENST00000509861.1_1_5:149433634-149434058:-|nuORF;ENSG00000182578|ENST00000675795|CSF1R	ENST00000509861.1_1_5:149433634-149434058:-|nuORF	ENST00000509861.1_1_5:149433634-149434058:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	409.5382080078125	3	409.537736	1225.59138	0.6769	0.00027722	-3.4676	-0.0014201	-2.7907	-0.0011429	409.53630055980653	50.798	1.9252	50.798	50.509	52.434	0					104	44	6	0	0	0	0.50453	1	3886	3886		53.597	3.5634	1	11037000			50541	8010	41813	41844	54808	54808					-0.012394269971537142
RPTFRQMQL	9	Unmodified	_RPTFRQMQL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.H2029Qfs*32|1|0.9|ENSG00000196924|chrX:154353130-154353140|TGCTGGCCACG/-|frameshift_variant;FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant;FLNB|p.S2513Rfs*5|1|0.04|ENSG00000136068|chr3:58169710-58169711|-/GATTC|frameshift_variant;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;FLNB|p.T1593Ifs*40|1|0.08|ENSG00000136068|chr3:58136084-58136085|-/TCTATCAAGTC|frameshift_variant;FLNB|p.L1100Ffs*93|1|0.04|ENSG00000136068|chr3:58123263-58123263|C/-|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA;FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OvCa9_classI_Rep2	2	588.8189697265625	2	588.81895	1175.62335	-0.11755	-6.9214E-05	-0.054827	-3.2283E-05	-0.17237	-0.0001015	588.8188542391886	72.228	2.0928	69.721	69.381	71.473	-2.5071					108	39	4	0	0	0	0.1804	3	5833	5833;5836;5851		79.713	18.052	1	1112400			50542	8659;4455	41814	41845	54809;54810;54811	54809					0.042559854766750504
RPTFRQMQL	9	Unmodified	_RPTFRQMQL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.H2029Qfs*32|1|0.9|ENSG00000196924|chrX:154353130-154353140|TGCTGGCCACG/-|frameshift_variant;FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant;FLNB|p.S2513Rfs*5|1|0.04|ENSG00000136068|chr3:58169710-58169711|-/GATTC|frameshift_variant;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;FLNB|p.T1593Ifs*40|1|0.08|ENSG00000136068|chr3:58136084-58136085|-/TCTATCAAGTC|frameshift_variant;FLNB|p.L1100Ffs*93|1|0.04|ENSG00000136068|chr3:58123263-58123263|C/-|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA;FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OvCa9_classI_Rep3	3	588.819580078125	2	588.81895	1175.62335	-1.244	-0.00073247	1.0615	0.00062501	-0.1825	-0.00010746	588.8196084801616	72.446	2.1291	69.844	69.376	71.505	-2.6023					122	42	4	0	0	0	0.3076	5	3456	3456;3463;3482;3489;3495		62.107	10.772	1	1640900			50543	8659;4455	41814	41845	54812;54813;54814;54815;54816	54812					0.042559854766750504
RPTFRQMQL	9	Unmodified	_RPTFRQMQL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.H2029Qfs*32|1|0.9|ENSG00000196924|chrX:154353130-154353140|TGCTGGCCACG/-|frameshift_variant;FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant;FLNB|p.S2513Rfs*5|1|0.04|ENSG00000136068|chr3:58169710-58169711|-/GATTC|frameshift_variant;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;FLNB|p.T1593Ifs*40|1|0.08|ENSG00000136068|chr3:58136084-58136085|-/TCTATCAAGTC|frameshift_variant;FLNB|p.L1100Ffs*93|1|0.04|ENSG00000136068|chr3:58123263-58123263|C/-|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA;FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OvCa9_classI_Rep4_	4	588.8200073242188	2	588.81895	1175.62335	-0.89637	-0.0005278	0.16497	9.714E-05	-0.7314	-0.00043066	588.8190198516028	73.646	2.497	70.25	69.543	72.04	-3.3961					118	51	4	0	0	0	0.21231	1	5728	5728		74.255	13.283	1	1375100			50544	8659;4455	41814	41845	54817	54817					0.042559854766750504
RPTFRQMQL	9	Unmodified	_RPTFRQMQL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.H2029Qfs*32|1|0.9|ENSG00000196924|chrX:154353130-154353140|TGCTGGCCACG/-|frameshift_variant;FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant;FLNB|p.S2513Rfs*5|1|0.04|ENSG00000136068|chr3:58169710-58169711|-/GATTC|frameshift_variant;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;FLNB|p.T1593Ifs*40|1|0.08|ENSG00000136068|chr3:58136084-58136085|-/TCTATCAAGTC|frameshift_variant;FLNB|p.L1100Ffs*93|1|0.04|ENSG00000136068|chr3:58123263-58123263|C/-|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA;FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MATCH	OvCa99_classI_Rep5	1		2	588.81895	1175.62335	-0.23177	-0.00013647	-2.2697	-0.0013365	-2.5015	-0.0014729	589.3191588020576	70.547	0.31381	70.547	70.328	70.641	0	0.14853	-0.0027823	NaN	74.255	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124810			50545	8659;4455	41814	41845							0.042559854766750504
RPTGLVVLL	9	Unmodified	_RPTGLVVLL_					0	0	0		ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3;nc|ENSG00000144357|Q6ZT12-2|UBR3;ENST00000430321.5_1_2:170821003-170871346:+|nuORF	ENSG00000144357|ENST00000272793|UBR3	ENSG00000144357|ENST00000272793|UBR3	MULTI-MSMS	OvCa9_classI_Rep3	3	484.3184509277344	2	484.318577	966.622602	-0.71351	-0.00034557	0.30616	0.00014828	-0.40734	-0.00019728	484.318588992095	115.68	1.0854	114.64	114.35	115.44	-1.0414					53	21	3	0	0	0	0.44568	1	8609	8609		47.657	6.8792	1	180240			50546	5144	41815	41846	54818	54818					0.13795514099274442
RPTIAVTFL	9	Unmodified	_RPTIAVTFL_					0	0	0			REV__ENSG00000171936|ENST00000641646|OR10H3	REV__ENSG00000171936|ENST00000641646|OR10H3	MULTI-SECPEP	OvCa9_classI_Rep3	3	509.78759765625	2	509.30821	1016.60187	-0.48143	-0.0002452	0.99787	0.00050822	0.51643	0.00026302	509.3085245888642	99.201	0.66319	97.516	97.322	97.985	-1.685					20	12	2	0	0	0	0.027462	1	6691	6691		44.117	0	1	20985	+		50547	21659	41816	41847	54819	54819					0.09422923719591836
RPTIPGGR	8	Unmodified	_RPTIPGGR_					0	0	0		ENST00000376138.7_2_10:27149870-27149954:-|nuORF	ENST00000376138.7_2_10:27149870-27149954:-|nuORF	ENST00000376138.7_2_10:27149870-27149954:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	427.2541198730469	2	427.253769	852.492984	0.47927	0.00020477	-0.70424	-0.00030089	-0.22497	-9.6119E-05	427.25343840755255	38.849	1.9995	35.923	35.502	37.502	-2.9264					103	39	4	0	0	0	0.72731	1	1613	1613		37.812	2.1932	1	1592600			50548	11068	41817	41848	54820	54820					0.06083757540000079
RPTIRKALE	9	Unmodified	_RPTIRKALE_					0	0	0		tr|A0A7D6ZHP0|A0A7D6ZHP0_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03685PE=4SV=1	tr|A0A7D6ZHP0|A0A7D6ZHP0_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03685PE=4SV=1	tr|A0A7D6ZHP0|A0A7D6ZHP0_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03685PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	542.8262939453125	2	542.33529	1082.65603	0.12425	6.7384E-05	-0.48933	-0.00026538	-0.36508	-0.000198	542.3349997852371	66.288	0.89478	63.593	63.319	64.213	-2.6958					33	17	4	0	0	0	0.027462	1	5169	5169		30.504	0	1	256370			50549	35583	41818	41849	54821	54821					0.11800515871163952
RPTKKLQQQ	9	Unmodified	_RPTKKLQQQ_					0	0	0		nc|ENSG00000090975|Q9BZ72-3|PITPNM2;nc|ENSG00000090975|Q9BZ72-2|PITPNM2;ENSG00000090975|ENST00000320201|PITPNM2	nc|ENSG00000090975|Q9BZ72-3|PITPNM2	nc|ENSG00000090975|Q9BZ72-3|PITPNM2	MULTI-MSMS	OvCa99_classI_Rep5	1	563.8394775390625	2	563.838197	1125.66184	-0.19529	-0.00011011	-0.25113	-0.0001416	-0.44643	-0.00025171	563.8379584814613	52.105	0.78051	52.105	51.829	52.61	0					40	17	3	0	0	0	0.50149	1	4056	4056		42.396	1.618	1	3543600			50550	1855	41819	41850	54822	54822					0.10403614382857995
RPTLELLPQ	9	Unmodified	_RPTLELLPQ_					0	0	0			REV__ENSG00000110104|ENST00000227520|CCDC86	REV__ENSG00000110104|ENST00000227520|CCDC86	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.8131713867188	2	533.816399	1065.61824	-0.30614	-0.00016342	-2.4915	-0.00133	-2.7977	-0.0014934	533.8149864084872	32.454	1.1456	29.759	29.206	30.352	-2.6954					49	30	2	0	0	0	0.69666	1	761	761		19.104	0.77911	1	23711	+		50551	17972	41820	41851	54823	54823					0.08806004885695984
RPTLPVGSL	9	Unmodified	_RPTLPVGSL_					0	0	0		ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.2855224609375	2	470.284734	938.554916	0.040741	1.916E-05	-0.59324	-0.00027899	-0.5525	-0.00025983	470.28460045492636	91.633	1.7254	89.091	88.501	90.226	-2.5425					108	33	5	0	0	0	0.22035	2	7929	7929;7941		72.879	11.907	1	476490			50552	6143	41821	41852	54824;54825	54824					0.08318064168486217
RPTLPVGSL	9	Unmodified	_RPTLPVGSL_					0	0	0		ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	MULTI-MATCH	OvCa9_classI_Rep2	2		2	470.284734	938.554916	1.5897	0.00074762	-2.1462	-0.0010093	-0.5565	-0.00026171	470.2838900861185	90.404	1.7274	89.102	88.532	90.259	-1.302	0.0026219	-0.00094857	NaN	72.879	94	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	378130			50553	6143	41821	41852							0.08318064168486217
RPTLPVGSL	9	Unmodified	_RPTLPVGSL_					0	0	0		ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	ENSG00000161921|ENST00000293778|CXCL16	MULTI-MATCH	OvCa9_classI_Rep3	3		2	470.284734	938.554916	-0.42553	-0.00020012	-0.52122	-0.00024512	-0.94675	-0.00044524	470.2847455302955	91.129	1.6146	89.105	88.52	90.135	-2.0241	0.005629	0.00057986	NaN	72.879	96	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	557930			50554	6143	41821	41852							0.08318064168486217
RPTLPVKSL	9	Unmodified	_RPTLPVKSL_					0	0	0		nc|ENSG00000055070|Q7Z422-2|SZRD1;nc|ENSG00000055070|Q7Z422-4|SZRD1;nc|ENSG00000055070|Q7Z422-3|SZRD1;nc|ENSG00000055070|Q7Z422-5|SZRD1;ENSG00000055070|ENST00000401088|SZRD1;ENST00000472461.1_1_1:16694381-16721632:+|nuORF	nc|ENSG00000055070|Q7Z422-2|SZRD1	nc|ENSG00000055070|Q7Z422-2|SZRD1	MULTI-MSMS	OvCa9_classI_Rep2	2	505.821533203125	2	505.821484	1009.62842	-0.7334	-0.00037097	0.17941	9.075E-05	-0.55399	-0.00028022	505.8215617270653	69.51	1.9154	66.89	66.565	68.48	-2.6203					104	37	4	0	0	0	0.040625	7	5519	5508;5514;5519;5524;5530;5538;5544		126.24	33.047	1	1701400			50555	1217	41822	41853	54826;54827;54828;54829;54830;54831;54832	54828					0.12398612610945747
RPTLPVKSL	9	Unmodified	_RPTLPVKSL_					0	0	0		nc|ENSG00000055070|Q7Z422-2|SZRD1;nc|ENSG00000055070|Q7Z422-4|SZRD1;nc|ENSG00000055070|Q7Z422-3|SZRD1;nc|ENSG00000055070|Q7Z422-5|SZRD1;ENSG00000055070|ENST00000401088|SZRD1;ENST00000472461.1_1_1:16694381-16721632:+|nuORF	nc|ENSG00000055070|Q7Z422-2|SZRD1	nc|ENSG00000055070|Q7Z422-2|SZRD1	MULTI-MSMS	OvCa9_classI_Rep3	3	505.8212890625	2	505.821484	1009.62842	0.052962	2.6789E-05	-0.31936	-0.00016154	-0.2664	-0.00013475	505.82124178267156	69.784	2.2575	67.064	66.706	68.964	-2.7196					105	44	4	0	0	0	0.046778	5	3128	3122;3128;3133;3139;3147		120.87	35.953	1	915200			50556	1217	41822	41853	54833;54834;54835;54836;54837	54834					0.12398612610945747
RPTLPVKSL	9	Unmodified	_RPTLPVKSL_					0	0	0		nc|ENSG00000055070|Q7Z422-2|SZRD1;nc|ENSG00000055070|Q7Z422-4|SZRD1;nc|ENSG00000055070|Q7Z422-3|SZRD1;nc|ENSG00000055070|Q7Z422-5|SZRD1;ENSG00000055070|ENST00000401088|SZRD1;ENST00000472461.1_1_1:16694381-16721632:+|nuORF	nc|ENSG00000055070|Q7Z422-2|SZRD1	nc|ENSG00000055070|Q7Z422-2|SZRD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.822021484375	2	505.821484	1009.62842	-1.0931	-0.0005529	0.86483	0.00043745	-0.22823	-0.00011544	505.82191544289986	70.588	1.697	67.107	66.787	68.484	-3.4812					107	34	4	0	0	0	0.027568	3	5351	5326;5338;5351		138.06	53.147	1	1979400			50557	1217	41822	41853	54838;54839;54840	54840					0.12398612610945747
RPTLRGTL	8	Unmodified	_RPTLRGTL_					0	0	0			REV__TSHZ1|p.K854R|1|0.39|ENSG00000179981|chr18:75287968-75287968|A/G|missense_variant	REV__TSHZ1|p.K854R|1|0.39|ENSG00000179981|chr18:75287968-75287968|A/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	457.2834777832031	2	457.282526	912.550499	0.26034	0.00011905	-0.65608	-0.00030001	-0.39574	-0.00018096	457.2821433033136	59.467	2.2271	56.075	55.655	57.882	-3.392					117	44	5	0	0	0	0.7224	1	3991	3991		38.806	0	1	1427100	+		50558	32735	41823	41854	54841	54841					0.09072599745559273
RPTLWAAAL	9	Unmodified	_RPTLWAAAL_					0	0	0		nc|ENSG00000146674|P17936-2|IGFBP3;ENSG00000146674|ENST00000613132|IGFBP3	nc|ENSG00000146674|P17936-2|IGFBP3	nc|ENSG00000146674|P17936-2|IGFBP3	MSMS	OvCa9_classI_Rep2	2	499.7927551269531	2	499.792727	997.5709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.2	1	107.98	107.48	108.48	-0.22498								0	0	0	0.17876	1	10127	10127		36.447	2.5251	1				50559	5301	41824	41855	54842	54842					0.07201770405345087
RPTLWAAAL	9	Unmodified	_RPTLWAAAL_					0	0	0		nc|ENSG00000146674|P17936-2|IGFBP3;ENSG00000146674|ENST00000613132|IGFBP3	nc|ENSG00000146674|P17936-2|IGFBP3	nc|ENSG00000146674|P17936-2|IGFBP3	MSMS	OvCa9_classI_Rep2	2	499.79205322265625	2	499.792727	997.5709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	108.25	1	108.02	107.52	108.52	-0.22498								0	0	0	0.17513	1	10132	10132		41.427	7.2541	1				50560	5301	41824	41855	54843	54843					0.07201770405345087
RPTPHPHPAS	10	Unmodified	_RPTPHPHPAS_					0	0	0			REV__ENST00000477165.1_1_9:131774250-131776725:-|nuORF	REV__ENST00000477165.1_1_9:131774250-131776725:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.7874755859375	2	548.785964	1095.55738	0.69367	0.00038068	3.2051	0.0017589	3.8988	0.0021396	548.787840350563	35.594	1.9958	32.745	32.391	34.386	-2.849					120	39	4	0	0	0	0.67931	1	1231	1231		32.812	7.2384	1	883440	+		50561	26382	41825	41856	54844	54844					0.013419126261169367
RPTPKNSL	8	Unmodified	_RPTPKNSL_					0	0	0		ENST00000418418.1_1_17:19743579-19743825:+|nuORF;ENST00000513465.1_1_4:43901008-43901365:+|nuORF;nc|ENSG00000065518|O95168-2|NDUFB4;ENSG00000065518|ENST00000184266|NDUFB4	ENST00000418418.1_1_17:19743579-19743825:+|nuORF	ENST00000418418.1_1_17:19743579-19743825:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.7672424316406	2	456.766709	911.518865	1.0566	0.00048261	-0.82415	-0.00037644	0.23244	0.00010617	456.76612331713255	35.878	1.0978	33.029	32.79	33.887	-2.849					56	21	3	0	0	0	0.67872	1	1187	1187		47.657	8.4045	1	149900			50562	1328	41826	41857	54845	54845					0.05956606991605895
RPTPPASGKSH	11	Unmodified	_RPTPPASGKSH_					0	0	0		ENST00000536613.6_1_17:37342683-37349731:-|nuORF	ENST00000536613.6_1_17:37342683-37349731:-|nuORF	ENST00000536613.6_1_17:37342683-37349731:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.8218994140625	2	567.804354	1133.59415	-0.83136	-0.00047205	3.9539	0.0022451	3.1226	0.001773	567.8064755140259	27.831	0.29983	27.831	27.691	27.991	0					9	5	2	0	0	0	0.026089	1	859	859		16.717	2.5803	1	36674			50563	13390	41827	41858	54846	54846					0.03270164452055724
RPTQALRLM	9	Unmodified	_RPTQALRLM_					0	0	0			REV__ENST00000379660.4_1_6:8434627-8435642:-|nuORF	REV__ENST00000379660.4_1_6:8434627-8435642:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	542.8263549804688	2	543.316043	1084.61753	-0.38298	-0.00020808	0.48036	0.00026099	0.097381	5.2908E-05	543.3164231027769	66.847	1.5865	64.186	63.651	65.238	-2.661					56	31	2	0	0	0	0.027462	1	5182	5182		54.776	21.964	1	364430	+		50564	25164	41828	41859	54847	54847					0.07860886964976999
RPTQALRLM	9	Unmodified	_RPTQALRLM_					0	0	0			REV__ENST00000379660.4_1_6:8434627-8435642:-|nuORF	REV__ENST00000379660.4_1_6:8434627-8435642:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	543.316043	1084.61753	1.0912	0.00059285	-1.0313	-0.00056032	0.059886	3.2537E-05	543.3152990396115	67.069	0.90761	64.181	63.881	64.789	-2.8873	-0.042	-0.0010836	NaN	54.776	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35881	+		50565	25164	41828	41859							0.07860886964976999
RPTSKRDSL	9	Unmodified	_RPTSKRDSL_					0	0	0		ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1	ENSG00000035928|ENST00000349703|RFC1	ENSG00000035928|ENST00000349703|RFC1	MULTI-MSMS	OvCa9_classI_Rep2	2	530.298583984375	2	530.298904	1058.58326	-0.044695	-2.3702E-05	-0.23688	-0.00012562	-0.28157	-0.00014932	530.2986629314781	30.396	1.3311	27.686	27.458	28.789	-2.7097					67	26	4	0	0	0	0.1804	1	820	820		79.713	15.505	1	398640			50566	1085	41829	41860	54848	54848					0.05630762077748841
RPTSRSVSH	9	Unmodified	_RPTSRSVSH_					0	0	0		ENST00000598800.5_1_19:4715722-4723732:-|nuORF;ENST00000601764.5_1_19:4697564-4723732:-|nuORF	ENST00000598800.5_1_19:4715722-4723732:-|nuORF	ENST00000598800.5_1_19:4715722-4723732:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.7938232421875	2	513.775597	1025.53664	-1.187	-0.00060983	0.18218	9.3602E-05	-1.0048	-0.00051623	513.7740677421033	42.861	1.0279	39.854	39.14	40.168	-3.0074					39	19	3	0	0	0	0.02744	1	2002	2002		52.937	6.1703	1	98958			50567	14199	41830	41861	54849	54849					0.02489322246469783
RPTSSALDCVL	11	Carbamidomethyl (C)	_RPTSSALDC(Carbamidomethyl (C))VL_	RPTSSALDC(1)VL		RPTSSALDC(56)VL		0	1	0		PAQR6|p.T233*|1|0.09|ENSG00000160781|chr1:156244824-156244825|-/CA|frameshift_variant;nc|ENSG00000160781|Q6TCH4-4|PAQR6;nc|ENSG00000160781|Q6TCH4-5|PAQR6;ENSG00000160781|ENST00000292291|PAQR6	PAQR6|p.T233*|1|0.09|ENSG00000160781|chr1:156244824-156244825|-/CA|frameshift_variant	PAQR6|p.T233*|1|0.09|ENSG00000160781|chr1:156244824-156244825|-/CA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	609.8094482421875	2	609.810987	1217.60742	2.169	0.0013227	-4.128	-0.0025173	-1.959	-0.0011946	609.8086321099138	117.58	1.4007	117.58	117.27	118.67	0					52	29	2	0	0	0	0.4646	1	13484	13484		56.434	8.4743	1	428650			50568	6088	41831	41862	54850	54850	58				0.007322344491058175
RPTVAALTLA	10	Unmodified	_RPTVAALTLA_					0	0	0			REV__ENST00000479501.5_1_20:61926459-61943880:+|nuORF	REV__ENST00000479501.5_1_20:61926459-61943880:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	506.8102111816406	2	506.811116	1011.60768	1.4081	0.00071364	-2.4174	-0.0012251	-1.0093	-0.00051151	506.809990859047	88.555	2.3705	87.187	86.69	89.061	-1.3676					168	47	5	0	0	0	0.44431	1	7779	7779		62.107	0	1	5233500	+		50569	17480	41832	41863	54851	54851					0.10234022231259132
RPTVPRVQS	9	Unmodified	_RPTVPRVQS_					0	0	0			REV__ENST00000477081.1_1_17:59482609-59483362:+|nuORF	REV__ENST00000477081.1_1_17:59482609-59483362:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3355102539062	2	520.30399	1038.59343	0.37697	0.00019614	3.7147	0.0019328	4.0916	0.0021289	520.3051915411652	68.364	0.19617	64.874	64.72	64.916	-3.4902					5	3	2	0	0	0	0.027462	1	5050	5050		31.53	10.583	1	19911	+		50570	26378	41833	41864	54852	54852					0.0756736980297319
RPVCVDKPDF	10	Unmodified	_RPVCVDKPDF_					0	0	0			REV__tr|A0A7D6VUD9|A0A7D6VUD9_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08140PE=4SV=1	REV__tr|A0A7D6VUD9|A0A7D6VUD9_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08140PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	588.3197631835938	2	588.297516	1174.58048	-0.23316	-0.00013717	-1.5644	-0.00092031	-1.7975	-0.0010575	588.2977293716291	47.42	0.29687	44.312	44.185	44.482	-3.1077					6	5	2	0	0	0	0.026551	1	2542	2542		79.713	10.866	1	32387	+		50571	31671	41834	41865	54853	54853					0.00017170628575513547
RPVGFSLLV	9	Unmodified	_RPVGFSLLV_					0	0	0			REV__ENSG00000092439|ENST00000646667|TRPM7	REV__ENSG00000092439|ENST00000646667|TRPM7	MULTI-MSMS	OvCa9_classI_Rep2	2	494.3004455566406	2	494.302927	986.591301	-3.5514	-0.0017554	-0.56102	-0.00027732	-4.1124	-0.0020328	494.3024982316327	153.87	1.3713	153.64	153.28	154.65	-0.22696					70	29	4	0	0	0	0.59983	1	15670	15670		31.955	6.5047	1	375650	+		50572	17267	41835	41866	54854	54854					0.09746941065191095
RPVGLVLRW	9	Unmodified	_RPVGLVLRW_					0	0	0		ENST00000392097.4_1_1:169455486-169455657:+|nuORF	ENST00000392097.4_1_1:169455486-169455657:+|nuORF	ENST00000392097.4_1_1:169455486-169455657:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.295654296875	2	548.342918	1094.67128	0.48913	0.00026821	3.8251	0.0020975	4.3142	0.0023657	548.3465626830595	33.611	0.44463	30.823	30.558	31.003	-2.7881					15	8	3	0	0	0	0.027462	1	901	901		29.15	2.4566	1	20453			50573	11212	41836	41867	54855	54855					0.12773427459046616
RPVGPEIHKEK	11	Unmodified	_RPVGPEIHKEK_					0	0	0			REV__TP53TG5|p.E158G|1|0.06|ENSG00000124251|chr20:45375334-45375334|T/C|missense_variant	REV__TP53TG5|p.E158G|1|0.06|ENSG00000124251|chr20:45375334-45375334|T/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	645.3711547851562	2	645.369861	1288.72517	0.80775	0.0005213	-1.2521	-0.00080806	-0.44434	-0.00028676	645.368778967193	89.365	1.9879	87.999	87.677	89.665	-1.3659					99	39	4	0	0	0	0.69099	1	7867	7867		32.751	3.5805	1	419820	+		50574	29522	41837	41868	54856	54856					0.09235555100076454
RPVGPGRAL	9	Unmodified	_RPVGPGRAL_					0	0	0		ENSG00000162408|ENST00000377705|NOL9;ENST00000464665.1_1_1:6609704-6614547:-|nuORF	ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.23284912109375	2	461.782693	921.550834	-1.5531	-0.00071721	1.454	0.00067145	-0.099089	-4.5757E-05	461.78328643927676	45.613	1.3051	42.574	42.23	43.535	-3.0385					55	24	4	0	0	0	0.027462	1	2341	2341		35.618	0	1	194630			50575	6178	41838	41869	54857	54857					0.08692019465422618
RPVGPGRAL	9	Unmodified	_RPVGPGRAL_					0	0	0		ENSG00000162408|ENST00000377705|NOL9;ENST00000464665.1_1_1:6609704-6614547:-|nuORF	ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	MULTI-MATCH	OvCa9_classI_Rep2	2		2	461.782693	921.550834	-0.18058	-8.339E-05	0.10613	4.9009E-05	-0.074451	-3.438E-05	461.78266147173673	45.417	0.95198	42.707	42.298	43.25	-2.7097	0.06624	-0.00073418	NaN	34.173	31	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43303			50576	6178	41838	41869							0.08692019465422618
RPVGPPATSTP	11	Unmodified	_RPVGPPATSTP_					0	0	0		ENST00000267294.4_1_13:100617617-100617761:-|nuORF	ENST00000267294.4_1_13:100617617-100617761:-|nuORF	ENST00000267294.4_1_13:100617617-100617761:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.2979125976562	2	540.29583	1078.57711	-0.33982	-0.0001836	3.7096	0.0020043	3.3698	0.0018207	540.2979670747679	38.277	3.0652	35.351	34.907	37.972	-2.9264					190	60	5	0	0	0	0.48738	1	1477	1477		54.776	11.912	1	3652900			50577	9967	41839	41870	54858	54858					0.04096243846242942
RPVGVPHTAR	10	Unmodified	_RPVGVPHTAR_					0	0	0			REV__ENST00000312655.8_1_17:57430576-57430774:+|nuORF	REV__ENST00000312655.8_1_17:57430576-57430774:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.3162841796875	2	545.317432	1088.62031	0.77007	0.00041993	-2.2325	-0.0012174	-1.4624	-0.00079748	545.3159458313047	139.53	2.8445	138.03	137.04	139.89	-1.4952					125	55	3	0	0	0	0.69073	1	13569	13569		31.53	3.4483	1	48177	+		50578	24358	41840	41871	54859	54859					0.07954478414171717
RPVILIGYGT	10	Unmodified	_RPVILIGYGT_					0	0	0		nc|ENSG00000141449|Q9C091-3|GREB1L;ENSG00000141449|ENST00000424526|GREB1L;nc|ENSG00000141449|Q9C091-4|GREB1L;ENST00000578368.5_1_18:18963479-19048745:+|nuORF;ENST00000584446.5_1_18:18963479-19034595:+|nuORF	nc|ENSG00000141449|Q9C091-3|GREB1L	nc|ENSG00000141449|Q9C091-3|GREB1L	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.825439453125	2	544.826766	1087.63898	-5.1365	-0.0027985	1.1933	0.00065013	-3.9432	-0.0021484	544.8273952320496	155.45	0.90656	153.96	153.69	154.6	-1.4911					53	25	3	0	0	0	0.7759	1	15389	15389		21.96	0	1	111000			50579	4915	41841	41872	54860	54860					0.09866595265384603
RPVIRGGT	8	Unmodified	_RPVIRGGT_					0	0	0			REV__ENST00000423695.6_1_5:10250480-10261980:+|nuORF;REV__nc|ENSG00000150753|P48643-2|CCT5	REV__nc|ENSG00000150753|P48643-2|CCT5	MULTI-MSMS	OvCa9_classI_Rep2	2	428.261474609375	2	428.261594	854.508634	-2.1797	-0.00093349	2.171	0.00092976	-0.0087153	-3.7324E-06	428.2624599299376	144.02	1.6837	143.79	143.2	144.88	-0.22697					114	33	5	0	0	0	0.74754	2	14505	14445;14505		27.882	4.8398	1	330270	+		50580	25634;20200	41842	41873	54861;54862	54862					0.07556044057048439
RPVIRGGT	8	Unmodified	_RPVIRGGT_					0	0	0			REV__ENST00000423695.6_1_5:10250480-10261980:+|nuORF;REV__nc|ENSG00000150753|P48643-2|CCT5	REV__nc|ENSG00000150753|P48643-2|CCT5	MULTI-MSMS	OvCa9_classI_Rep3	3	428.26190185546875	2	428.261594	854.508634	-2.5112	-0.0010754	2.6852	0.00115	0.17402	7.4528E-05	428.26264584865925	144.43	1.5889	143.46	143.1	144.69	-0.97301					79	31	4	0	0	0	0.75208	1	12091	12091		17.365	0	1	839380	+		50581	25634;20200	41842	41873	54863	54863					0.07556044057048439
RPVIRGGT	8	Unmodified	_RPVIRGGT_					0	0	0			REV__ENST00000423695.6_1_5:10250480-10261980:+|nuORF;REV__nc|ENSG00000150753|P48643-2|CCT5	REV__nc|ENSG00000150753|P48643-2|CCT5	MULTI-MSMS	OvCa9_classI_Rep4_	4	428.261474609375	2	428.261594	854.508634	-0.2241	-9.5974E-05	0.26636	0.00011407	0.042257	1.8097E-05	428.2616025856162	144.91	1.2947	143.47	143.1	144.39	-1.4357					70	24	4	0	0	0	0.75426	1	14237	14237		18.324	0	1	398580	+		50582	25634;20200	41842	41873	54864	54864					0.07556044057048439
RPVITVKH	8	Unmodified	_RPVITVKH_					0	0	0			REV__tr|A0A553SHF3|A0A553SHF3_NIACIATP-dependentzincmetalloproteaseFtsHOS=NialliacirculansOX=1397GN=ftsHPE=3SV=1	REV__tr|A0A553SHF3|A0A553SHF3_NIACIATP-dependentzincmetalloproteaseFtsHOS=NialliacirculansOX=1397GN=ftsHPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	475.3002014160156	2	475.300719	948.586885	0.83712	0.00039788	-1.305	-0.00062029	-0.46792	-0.0002224	475.30006565058653	65.392	2.5484	62.696	62.21	64.758	-2.6958					145	50	5	0	0	0	0.66057	1	5049	5049		51.335	5.3835	1	2264200	+		50583	29796	41843	41874	54865	54865					0.11053476642280202
RPVKDRLG	8	Unmodified	_RPVKDRLG_					0	0	0		PHAX|p.K314Tfs*23|1|0.12|ENSG00000164902|chr5:126624598-126624599|-/ACAAG|frameshift_variant;ENSG00000164902|ENST00000297540|PHAX	PHAX|p.K314Tfs*23|1|0.12|ENSG00000164902|chr5:126624598-126624599|-/ACAAG|frameshift_variant	PHAX|p.K314Tfs*23|1|0.12|ENSG00000164902|chr5:126624598-126624599|-/ACAAG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	470.78741455078125	2	470.787976	939.561398	0.23229	0.00010936	-0.89827	-0.0004229	-0.66598	-0.00031354	470.78745923109625	40.781	2.1682	38.071	37.601	39.769	-2.7097					104	43	4	0	0	0	0.65062	3	2097	2097;2109;2121		53.351	9.2347	1	1630700			50584	6497	41844	41875	54866;54867;54868	54866					0.08920002119850778
RPVKDRLG	8	Unmodified	_RPVKDRLG_					0	0	0		PHAX|p.K314Tfs*23|1|0.12|ENSG00000164902|chr5:126624598-126624599|-/ACAAG|frameshift_variant;ENSG00000164902|ENST00000297540|PHAX	PHAX|p.K314Tfs*23|1|0.12|ENSG00000164902|chr5:126624598-126624599|-/ACAAG|frameshift_variant	PHAX|p.K314Tfs*23|1|0.12|ENSG00000164902|chr5:126624598-126624599|-/ACAAG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.78753662109375	2	470.787976	939.561398	-0.18553	-8.7345E-05	-1.1363	-0.00053496	-1.3218	-0.00062231	470.78744487463723	40.717	3.4773	37.763	37.112	40.589	-2.9541					147	66	5	0	0	0	0.60331	1	1825	1825		63.306	5.495	1	6500500			50585	6497	41844	41875	54869	54869					0.08920002119850778
RPVKFPSL	8	Unmodified	_RPVKFPSL_					0	0	0		ENSG00000165138|ENST00000353234|ANKS6;nc|ENSG00000165138|Q68DC2-4|ANKS6	ENSG00000165138|ENST00000353234|ANKS6	ENSG00000165138|ENST00000353234|ANKS6	MULTI-MSMS	OvCa9_classI_Rep2	2	472.2875671386719	2	472.28982	942.565087	-3.3722	-0.0015927	-0.90359	-0.00042676	-4.2758	-0.0020194	472.2892568382278	150.85	1.4757	150.62	150.22	151.7	-0.22697					85	29	4	0	0	0	0.75723	1	15287	15287		23.042	2.0956	1	396600			50586	6526	41845	41876	54870	54870					0.09150671893701201
RPVKKNGT	8	Unmodified	_RPVKKNGT_					0	0	0		ENST00000437944.5_1_2:175260481-175263028:+|nuORF	ENST00000437944.5_1_2:175260481-175263028:+|nuORF	ENST00000437944.5_1_2:175260481-175263028:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	450.2738952636719	2	450.274701	898.534849	-3.7498	-0.0016884	3.5683	0.0016067	-0.18149	-8.172E-05	450.27623858459356	147.83	1.7988	146.88	146.5	148.3	-0.95119					100	35	5	0	0	0	0.7549	1	12500	12500		24.203	4.8428	1	751980			50587	11893	41846	41877	54871	54871					0.08152313228526964
RPVKVGSGTT	10	Unmodified	_RPVKVGSGTT_					0	0	0			REV__ENST00000470565.5_1_20:48713044-48729665:-|nuORF	REV__ENST00000470565.5_1_20:48713044-48729665:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2911071777344	2	501.290548	1000.56654	-1.4695	-0.00073667	1.3149	0.00065914	-0.15466	-7.7529E-05	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.66721	1	11184	11184		34.173	0.65696	1	97838	+		50588	23480	41847	41878	54872	54872					0.06628261191815454
RPVLAGTR	8	Unmodified	_RPVLAGTR_					0	0	0			REV__ENST00000599429.5_1_19:17448434-17449065:+|nuORF	REV__ENST00000599429.5_1_19:17448434-17449065:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	435.2694396972656	2	435.269419	868.524284	0.29131	0.0001268	-0.70002	-0.0003047	-0.40872	-0.0001779	435.26897806617785	40.282	1.3859	37.572	37.052	38.438	-2.7097					82	27	6	0	0	0	0.71267	1	2032	2032		40.778	3.6191	1	329020	+		50589	24478	41848	41879	54873	54873					0.08476330574103486
RPVLAIVEV	9	Unmodified	_RPVLAIVEV_					0	0	0		nc|ENSG00000078269|O15056-2|SYNJ2;ENSG00000078269|ENST00000355585|SYNJ2;nc|ENSG00000078269|O15056-3|SYNJ2;ENST00000367112.1_2_6:158500311-158517393:+|nuORF;SYNJ2|p.H855Y|1|0.05|ENSG00000078269|chr6:158078277-158078277|C/T|missense_variant	nc|ENSG00000078269|O15056-2|SYNJ2	nc|ENSG00000078269|O15056-2|SYNJ2	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3161315917969	2	498.316035	994.617516	-0.044391	-2.2121E-05	-0.21861	-0.00010894	-0.263	-0.00013106	498.3157300992715	110.05	1.7303	109.88	109.41	111.14	-0.17236					105	34	7	0	0	0	0.24951	1	10347	10347		68.787	2.3575	1	1087000			50590	1591	41849	41880	54874	54874					0.11999210236672297
RPVLEQFL	8	Unmodified	_RPVLEQFL_					0	0	0		nc|ENSG00000258590|P0C6P0|NBEAP1	nc|ENSG00000258590|P0C6P0|NBEAP1	nc|ENSG00000258590|P0C6P0|NBEAP1	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2898864746094	2	501.292559	1000.57057	-1.4695	-0.00073667	-2.6975	-0.0013522	-4.167	-0.0020889	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.73626	1	11018	11018		33.516	5.2613	1	97838			50591	15360	41850	41881	54875	54875					0.07030350685522535
RPVLLHLHQ	9	Unmodified	_RPVLLHLHQ_					0	0	0		ENST00000475789.1_1_7:89789075-89791404:+|nuORF;ENSG00000164647|ENST00000297205|STEAP1	ENST00000475789.1_1_7:89789075-89791404:+|nuORF	ENST00000475789.1_1_7:89789075-89791404:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.30712890625	2	556.838	1111.66145	0.3161	0.00017601	1.2411	0.0006911	1.5572	0.00086712	556.8385072824244	79.29	1.2937	76.538	76.132	77.425	-2.7514					53	26	3	0	0	0	0.027462	1	6507	6507		30.504	3.7075	1	177330			50592	6472	41851	41882	54876	54876					0.11008239453644819
RPVLQSLVR	9	Unmodified	_RPVLQSLVR_					0	0	0		ENST00000546954.1_1_12:120882729-120884155:-|nuORF	ENST00000546954.1_1_12:120882729-120884155:-|nuORF	ENST00000546954.1_1_12:120882729-120884155:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	534.33740234375	2	534.337833	1066.66111	-1.8836	-0.0010065	1.4667	0.00078373	-0.4169	-0.00022277	534.3385363027232	49.37	2.527	46.609	45.829	48.356	-2.7603					129	50	4	0	0	0	0.58322	1	3124	3124		33.922	2.3918	1	911830			50593	13542	41852	41883	54877	54877					0.1304481973379552
RPVLRGGG	8	Unmodified	_RPVLRGGG_					0	0	0		ENST00000475854.1_1_X:100914419-100914797:-|nuORF	ENST00000475854.1_1_X:100914419-100914797:-|nuORF	ENST00000475854.1_1_X:100914419-100914797:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	406.2485656738281	2	406.248486	810.48242	0.12737	5.1745E-05	0.179	7.2718E-05	0.30637	0.00012446	406.2484453732125	140.19	2.0181	139.96	139.4	141.42	-0.22697					109	40	4	0	0	0	0.74971	2	13974	13974;13989		26.796	7.4361	1	304300			50594	12457	41853	41884	54878;54879	54878					0.06959774885569914
RPVLRGGG	8	Unmodified	_RPVLRGGG_					0	0	0		ENST00000475854.1_1_X:100914419-100914797:-|nuORF	ENST00000475854.1_1_X:100914419-100914797:-|nuORF	ENST00000475854.1_1_X:100914419-100914797:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	406.2482604980469	2	406.248486	810.48242	-1.2292	-0.00049936	1.4085	0.00057221	0.17932	7.285E-05	406.24894809520566	140.8	1.576	139.77	139.38	140.96	-1.0339					88	31	4	0	0	0	0.72922	1	11646	11646		37.028	1.8278	1	902300			50595	12457	41853	41884	54880	54880					0.06959774885569914
RPVLRGLVL	9	Unmodified	_RPVLRGLVL_					0	0	0		ENST00000373779.7_2_1:29652185-29652539:+|nuORF	ENST00000373779.7_2_1:29652185-29652539:+|nuORF	ENST00000373779.7_2_1:29652185-29652539:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.8475036621094	2	511.845294	1021.67603	1.215	0.00062189	-0.13455	-6.887E-05	1.0804	0.00055302	511.84514235689	85.522	2.0184	82.876	82.361	84.379	-2.6463					82	40	3	0	0	0	0.52083	2	7184	7184;7222		40.573	13.777	1	433590			50596	11016	41854	41885	54881;54882	54881					0.16606311601799462
RPVLSAAR	8	Unmodified	_RPVLSAAR_					0	0	0		ENST00000355552.7_2_3:127295839-127309587:-|nuORF;ENST00000469111.5_2_3:127298970-127309443:-|nuORF	ENST00000355552.7_2_3:127295839-127309587:-|nuORF	ENST00000355552.7_2_3:127295839-127309587:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	435.26904296875	2	435.269419	868.524284	-0.1815	-7.9E-05	-1.073	-0.00046705	-1.2545	-0.00054605	435.26868248288156	40.381	1.8146	37.427	37.012	38.827	-2.9541					94	34	4	0	0	0	0.74992	1	1735	1735		26.693	1.1189	1	1438300			50597	10679	41855	41886	54883	54883					0.08476330574080748
RPVMLLCLV	9	Oxidation (M)	_RPVM(Oxidation (M))LLCLV_		RPVM(1)LLCLV		RPVM(42)LLCLV	0	0	1		ENST00000509676.1_1_4:2934766-2935650:-|nuORF	ENST00000509676.1_1_4:2934766-2935650:-|nuORF	ENST00000509676.1_1_4:2934766-2935650:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.308349609375	2	530.306298	1058.59804	-0.95317	-0.00050547	0.82461	0.00043729	-0.12856	-6.8176E-05	530.3066661791732	57.975	0.85532	54.63	54.342	55.197	-3.3449					47	16	4	0	0	0	0.50066	1	3796	3796		42.474	7.2737	1	326380			50598	12962	41856	41887	54884	54884		345			0.07108794629880322
RPVPFFWF	8	Unmodified	_RPVPFFWF_					0	0	0		ENST00000548058.5_2_12:81648846-81648915:+|nuORF	ENST00000548058.5_2_12:81648846-81648915:+|nuORF	ENST00000548058.5_2_12:81648846-81648915:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.2953491210938	2	548.292362	1094.57017	0.52054	0.00028541	4.3353	0.002377	4.8559	0.0026624	548.2950889669573	33.486	4.8857	30.698	30.11	34.996	-2.7881					278	97	6	0	0	0	0.71055	3	1057	877;1009;1057		41.208	4.0493	1	7055400			50599	13556	41857	41888	54885;54886;54887	54887					0.026669757563240637
RPVPKDTSL	9	Unmodified	_RPVPKDTSL_					0	0	0		nc|ENSG00000106078|O75128-6|COBL;ENST00000462395.1_1_7:51085250-51098638:-|nuORF;nc|ENSG00000106078|O75128-3|COBL;ENSG00000106078|ENST00000265136|COBL;nc|ENSG00000106078|O75128-7|COBL;nc|ENSG00000106078|O75128-2|COBL	nc|ENSG00000106078|O75128-6|COBL	nc|ENSG00000106078|O75128-6|COBL	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.7926330566406	2	506.792924	1011.57129	-1.1578	-0.00058677	0.95424	0.0004836	-0.20357	-0.00010317	506.7932721562066	45.925	1.4541	42.852	42.457	43.911	-3.0724					64	27	4	0	0	0	0.1804	2	2374	2374;2386		79.713	22.992	1	319980			50600	2527	41858	41889	54888;54889	54888					0.06597145334569632
RPVPKDTSL	9	Unmodified	_RPVPKDTSL_					0	0	0		nc|ENSG00000106078|O75128-6|COBL;ENST00000462395.1_1_7:51085250-51098638:-|nuORF;nc|ENSG00000106078|O75128-3|COBL;ENSG00000106078|ENST00000265136|COBL;nc|ENSG00000106078|O75128-7|COBL;nc|ENSG00000106078|O75128-2|COBL	nc|ENSG00000106078|O75128-6|COBL	nc|ENSG00000106078|O75128-6|COBL	MULTI-MATCH	OvCa9_classI_Rep2	2		2	506.792924	1011.57129	-0.48731	-0.00024697	0.20627	0.00010454	-0.28104	-0.00014243	506.7929066004587	45.651	0.90015	42.941	42.647	43.547	-2.7097	0.044434	-0.00042531	NaN	79.713	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65398			50601	2527	41858	41889							0.06597145334569632
RPVPLARLLVI	11	Unmodified	_RPVPLARLLVI_					0	0	0			REV__chr7:55952276-55953179|426|15.46|0.84|4.21|+|ENST00000443449|MRPS17,MRPS17	REV__chr7:55952276-55953179|426|15.46|0.84|4.21|+|ENST00000443449|MRPS17,MRPS17	MULTI-MSMS	OvCa9_classI_Rep2	2	623.9154052734375	2	623.921532	1245.82851	-5.6275	-0.0035111	-0.80944	-0.00050503	-6.4369	-0.0040161	623.9209249558969	163.4	0.91801	163.18	162.75	163.67	-0.22696					66	30	3	0	0	0	0.72571	1	16688	16688		6.3127	0.39155	1	62419	+		50602	16096	41859	41890	54890	54890					0.21543087278541861
RPVPLNAVSH	10	Unmodified	_RPVPLNAVSH_					0	0	0		ENST00000335290.10_1_14:100842832-100847262:+|nuORF	ENST00000335290.10_1_14:100842832-100847262:+|nuORF	ENST00000335290.10_1_14:100842832-100847262:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.3123168945312	2	545.311815	1088.60908	0.53815	0.00029346	-0.8331	-0.0004543	-0.29494	-0.00016084	545.3112887104521	36.76	1.3955	33.868	33.395	34.791	-2.8925					73	27	5	0	0	0	0.50999	1	1336	1336		52.937	3.4952	1	755870			50603	10495	41860	41891	54891	54891					0.0683165632001419
RPVPLRTTVQT	11	Unmodified	_RPVPLRTTVQT_					0	0	0			REV__nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	REV__nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	MULTI-MSMS	OvCa99_classI_Rep5	1	634.3746337890625	2	634.377686	1266.74082	0.70958	0.00045014	-0.81179	-0.00051498	-0.10221	-6.4838E-05	634.3769097150116	164.24	2.8363	164.24	163	165.84	0					295	106	3	0	0	0	0.72491	1	19239	19239		16.717	0	1	532610	+		50604	21637	41861	41892	54892	54892					0.11811841617122809
RPVPLSARVQP	11	Unmodified	_RPVPLSARVQP_					0	0	0		chr16:2785646-2785799|320|125.99|0.22|9.19|-|ENST00000571674|PRSS33,PRSS33;chr16:2785171-2785375|310|125.63|0.13|9.87|-|ENST00000571674|PRSS33,PRSS33;ENSG00000103355|ENST00000682474|PRSS33;chr16:2784802-2785002|317|135.86|0.27|8.97|-|ENST00000570702|PRSS33,PRSS33	chr16:2785646-2785799|320|125.99|0.22|9.19|-|ENST00000571674|PRSS33,PRSS33	chr16:2785646-2785799|320|125.99|0.22|9.19|-|ENST00000571674|PRSS33,PRSS33	MULTI-SECPEP	OvCa9_classI_Rep2	2	407.9093017578125	3	407.247173	1218.71969	0.66708	0.00027167	2.3295	0.00094869	2.9966	0.0012204	407.248017323355	75.118	0.62091	73.147	72.796	73.417	-1.9711					17	11	2	0	0	0	0.026101	1	6186	6186		21.032	8.0748	1	16303			50605	373	41862	41893	54893	54893					0.11907876308259802
RPVPPGVFTG	10	Unmodified	_RPVPPGVFTG_					0	0	0		ENST00000378103.7_3_9:35740226-35740313:-|nuORF	ENST00000378103.7_3_9:35740226-35740313:-|nuORF	ENST00000378103.7_3_9:35740226-35740313:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.7869262695312	2	513.790184	1025.56581	-0.3471	-0.00017834	-4.4734	-0.0022984	-4.8205	-0.0024767	513.7878714786193	39.389	2.2851	36.463	35.948	38.233	-2.9264					123	44	5	0	0	0	0.62299	1	1671	1671		39.253	5.0803	1	2914100			50606	11102	41863	41894	54894	54894					0.05405466542742943
RPVPRKDFV	9	Unmodified	_RPVPRKDFV_					0	0	0		MST1R|p.F1128Wfs*30|1|0.12|ENSG00000164078|chr3:49891550-49891551|-/TTACTGTTCC|frameshift_variant;MST1R|p.D1208Efs*20|1|0.82|ENSG00000164078|chr3:49891217-49891218|-/GTAC|frameshift_variant;nc|ENSG00000164078|Q04912-7|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R;MST1R|p.N661Hfs*44|1|0.21|ENSG00000164078|chr3:49897585-49897586|TA/-|frameshift_variant;nc|ENSG00000164078|Q04912-5|MST1R	MST1R|p.F1128Wfs*30|1|0.12|ENSG00000164078|chr3:49891550-49891551|-/TTACTGTTCC|frameshift_variant	MST1R|p.F1128Wfs*30|1|0.12|ENSG00000164078|chr3:49891550-49891551|-/TTACTGTTCC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	557.3281860351562	2	557.330008	1112.64546	-0.055942	-3.1178E-05	-4.0763	-0.0022719	-4.1323	-0.002303	557.3276986582255	29.561	0.79918	29.561	29.337	30.136	0					38	15	5	0	0	0	0.40667	1	1061	1061		51.335	18.523	1	1052900			50607	6403	41864	41895	54895	54895					0.09364533216739801
RPVQSVTL	8	Unmodified	_RPVQSVTL_					0	0	0			REV__chr6:34424855-34425072|423|158.97|0.0|23.92|-|2|None,RPS10-NUDT3|1	REV__chr6:34424855-34425072|423|158.97|0.0|23.92|-|2|None,RPS10-NUDT3|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.26739501953125	2	450.269084	898.523616	-0.59426	-0.00026758	0.24146	0.00010872	-0.3528	-0.00015886	450.2691842813432	72.264	1.3123	68.808	68.364	69.676	-3.4563					84	26	5	0	0	0	0.45246	1	5536	5536		82.305	5.5309	1	1672500	+		50608	16078	41865	41896	54896	54896					0.07029491134380805
RPVRASRLL	9	Unmodified	_RPVRASRLL_					0	0	0		chr6:109250991-109254448|247|18.56|0.13|7.16|+|1|TE_info:L1PA2,L1PA2_dup2028,L1,LINE,donor,-,109245219,109250991|None,CCDC162P|102	chr6:109250991-109254448|247|18.56|0.13|7.16|+|1|TE_info:L1PA2,L1PA2_dup2028,L1,LINE,donor,-,109245219,109250991|None,CCDC162P|102	chr6:109250991-109254448|247|18.56|0.13|7.16|+|1|TE_info:L1PA2,L1PA2_dup2028,L1,LINE,donor,-,109245219,109250991|None,CCDC162P|102	MULTI-MSMS	OvCa9_classI_Rep3	3	534.3433227539062	2	534.343449	1066.67235	1.9733	0.0010544	-1.9799	-0.0010579	-0.0065619	-3.5063E-06	534.3423036869325	64.763	1.4145	61.77	61.395	62.809	-2.9933					70	27	3	0	0	0	0.69666	1	2527	2527		19.104	0	1	193540			50609	505	41866	41897	54897	54897					0.14167641827953048
RPVRLTGLLA	10	Unmodified	_RPVRLTGLLA_					0	0	0			REV__ENSG00000198535|ENST00000355522|C2CD4A	REV__ENSG00000198535|ENST00000355522|C2CD4A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.2954711914062	2	548.353483	1094.69241	0.53793	0.00029498	3.357	0.0018408	3.895	0.0021358	548.8551002570485	33.965	0.84261	31.177	30.805	31.648	-2.7881					31	16	4	0	0	0	0.026931	1	973	973		30.318	4.7437	1	33191	+		50610	23025	41867	41898	54898	54898					0.14885392767905614
RPVRQHHP	8	Unmodified	_RPVRQHHP_					0	0	0			REV__ENST00000455833.6_2_1:19234750-19235035:-|nuORF	REV__ENST00000455833.6_2_1:19234750-19235035:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	513.787841796875	2	513.788841	1025.56313	-0.70394	-0.00036168	-1.0298	-0.00052909	-1.7337	-0.00089076	513.7882058006563	39.281	1.982	36.571	35.964	37.946	-2.7097					102	39	5	0	0	0	0.73626	1	1912	1912		33.516	0.70317	1	512530	+		50611	26021	41868	41899	54899	54899					0.05137055928457812
RPVRRGGH	8	Unmodified	_RPVRRGGH_					0	0	0			REV__ENST00000433184.1_1_5:149340451-149341605:+|nuORF	REV__ENST00000433184.1_1_5:149340451-149341605:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.23699951171875	2	467.775734	933.536915	-0.12081	-5.6511E-05	3.4543	0.0016159	3.3335	0.0015593	467.77743279200996	40.986	0.44097	40.986	40.754	41.195	0					11	9	2	0	0	0	0.028476	1	2552	2552		14.664	0	1	31080	+		50612	25744	41869	41900	54900	54900					0.06748786756998015
RPVSDLRSPLS	11	Unmodified	_RPVSDLRSPLS_					0	0	0			REV__ENSG00000001629|ENST00000265742|ANKIB1	REV__ENSG00000001629|ENST00000265742|ANKIB1	MULTI-MSMS	OvCa9_classI_Rep2	2	613.8443603515625	2	613.846219	1225.67788	-1.3186	-0.00080939	1.0654	0.00065396	-0.25321	-0.00015543	613.846862023676	60.404	2.094	57.633	57.032	59.126	-2.7702					128	39	6	0	0	0	0.52474	1	4455	4455		51.528	0	1	1043300	+		50613	16363	41870	41901	54901	54901					0.07407275829109494
RPVTLYHLL	9	Unmodified	_RPVTLYHLL_					0	0	0		ENSG00000127337|ENST00000247843|YEATS4	ENSG00000127337|ENST00000247843|YEATS4	ENSG00000127337|ENST00000247843|YEATS4	MULTI-MSMS	OvCa9_classI_Rep3	3	556.3318481445312	2	556.334759	1110.65496	0.19549	0.00010876	-3.6363	-0.002023	-3.4408	-0.0019143	556.3324974852751	69.386	1.1434	66.572	66.261	67.405	-2.8143					67	22	4	0	0	0	0.5811	1	3074	3074		34.173	3.8548	1	473980			50614	3827	41871	41902	54902	54902					0.10406301502280257
RPVTPAWSL	9	Unmodified	_RPVTPAWSL_					0	0	0			REV__ENST00000447416.5_3_22:25003936-25006345:+|nuORF	REV__ENST00000447416.5_3_22:25003936-25006345:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.787841796875	2	513.790184	1025.56581	-0.3471	-0.00017834	-4.4734	-0.0022984	-4.8205	-0.0024767	513.7878714786193	39.389	2.2851	36.463	35.948	38.233	-2.9264					123	44	5	0	0	0	0.29717	1	1621	1621		63.306	17.354	1	2914100	+		50615	25916	41872	41903	54903	54903					0.05405466542742943
RPVTWNKTE	9	Unmodified	_RPVTWNKTE_					0	0	0			REV__nc|ENSG00000109762|Q9H3E2|SNX25	REV__nc|ENSG00000109762|Q9H3E2|SNX25	MULTI-MSMS	OvCa9_classI_Rep2	2	565.7989501953125	2	565.80128	1129.58801	-2.4631	-0.0013936	-1.339	-0.00075759	-3.802	-0.0021512	565.8004097051485	35.939	0.94262	33.229	32.95	33.893	-2.7097					48	18	4	0	0	0	0.42676	1	1489	1489		49.442	3.4693	1	164810	+		50616	17948	41873	41904	54904	54904					0.028396462205364514
RPVVQVFIA	9	Unmodified	_RPVVQVFIA_					0	0	0		ENSG00000158714|ENST00000289707|SLAMF8;nc|ENSG00000158714|Q9P0V8-2|SLAMF8	ENSG00000158714|ENST00000289707|SLAMF8	ENSG00000158714|ENST00000289707|SLAMF8	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.8185424804688	2	514.816202	1027.61785	-1.3937	-0.00071748	0.77829	0.00040068	-0.61537	-0.0003168	514.8164939747522	118.6	0.93716	117.25	116.94	117.88	-1.3444					32	17	3	0	0	0	0.59983	1	11111	11111		31.955	0	1	169580			50617	5970	41874	41905	54905	54905					0.10514629956537647
RPVVRAGG	8	Unmodified	_RPVVRAGG_					0	0	0		chr12:52898824-52899775|180|132.18|0.45|8.19|-|2|None,KRT8|3	chr12:52898824-52899775|180|132.18|0.45|8.19|-|2|None,KRT8|3	chr12:52898824-52899775|180|132.18|0.45|8.19|-|2|None,KRT8|3	MULTI-MSMS	OvCa9_classI_Rep2	2	406.2481689453125	2	406.248486	810.48242	0.12737	5.1745E-05	0.179	7.2718E-05	0.30637	0.00012446	406.2484453732125	140.19	2.0181	139.96	139.4	141.42	-0.22697					109	40	4	0	0	0	0.75915	1	13977	13977		20.482	0	1	304300			50618	318	41875	41906	54906	54906					0.06959774885569914
RPVVRAGG	8	Unmodified	_RPVVRAGG_					0	0	0		chr12:52898824-52899775|180|132.18|0.45|8.19|-|2|None,KRT8|3	chr12:52898824-52899775|180|132.18|0.45|8.19|-|2|None,KRT8|3	chr12:52898824-52899775|180|132.18|0.45|8.19|-|2|None,KRT8|3	MULTI-MSMS	OvCa9_classI_Rep3	3	406.2480773925781	2	406.248486	810.48242	-1.2292	-0.00049936	1.4085	0.00057221	0.17932	7.285E-05	406.24894809520566	140.8	1.576	139.77	139.38	140.96	-1.0339					88	31	4	0	0	0	0.74971	1	11652	11652		26.796	5.0938	1	902300			50619	318	41875	41906	54907	54907					0.06959774885569914
RPVVVYPFH	9	Unmodified	_RPVVVYPFH_					0	0	0			REV__ENST00000529654.5_1_8:145615920-145616956:+|nuORF	REV__ENST00000529654.5_1_8:145615920-145616956:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.3173828125	2	557.313826	1112.6131	1.5567	0.00086754	4.3631	0.0024316	5.9197	0.0032991	557.3163824775255	35.608	1.7447	32.759	32.441	34.186	-2.849					93	34	3	0	0	0	0.32337	1	1159	1159		60.294	3.8602	1	1396800	+		50620	21749	41876	41907	54908	54908					0.061297458137460126
RPVYPTIYS	9	Unmodified	_RPVYPTIYS_					0	0	0			REV__ENSG00000284526|ENST00000640006|unknown	REV__ENSG00000284526|ENST00000640006|unknown	MULTI-MSMS	OvCa9_classI_Rep2	2	548.295166015625	2	548.295299	1094.57605	-1.4493	-0.00079464	1.5915	0.0008726	0.14219	7.7962E-05	548.2961982412694	34.285	4.3001	31.575	31.119	35.419	-2.7097					197	86	6	0	0	0	0.48324	3	1335	1269;1335;1390		44.117	3.1879	1	2359300	+		50621	23669	41877	41908	54909;54910;54911	54910					0.032540294773070855
RPVYPTIYS	9	Unmodified	_RPVYPTIYS_					0	0	0			REV__ENSG00000284526|ENST00000640006|unknown	REV__ENSG00000284526|ENST00000640006|unknown	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.2953491210938	2	548.295299	1094.57605	0.52053	0.00028541	-1.0206	-0.0005596	-0.50008	-0.00027419	548.2950889669573	33.486	4.8857	30.698	30.11	34.996	-2.7881					278	97	6	0	0	0	0.53957	1	865	865		38.806	0.99462	1	7055400	+		50622	23669	41877	41908	54912	54912					0.032540294773070855
RPWCPALG	8	Unmodified	_RPWCPALG_					0	0	0		ENST00000332496.10_1_15:90771900-90772140:+|nuORF	ENST00000332496.10_1_15:90771900-90772140:+|nuORF	ENST00000332496.10_1_15:90771900-90772140:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	450.23236083984375	2	450.231448	898.448342	2.8356	0.0012767	-0.077881	-3.5064E-05	2.7578	0.0012416	450.23128469538574	44.037	1.542	41.328	40.955	42.497	-2.7097					76	30	4	0	0	0	0.69415	1	2521	2521		44.531	3.7529	1	858500			50623	10457	41878	41909	54913	54913					-0.004943895977021384
RPWKLIYYRAK	11	Unmodified	_RPWKLIYYRAK_					0	0	0		ENSG00000125482|ENST00000334270|TTF1	ENSG00000125482|ENST00000334270|TTF1	ENSG00000125482|ENST00000334270|TTF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.8069152832031	3	498.629506	1492.86669	-1.6158	-0.00080567	-1.8679	-0.00093137	-3.4836	-0.001737	498.6283948490955	50.483	0.36359	47.342	47.184	47.548	-3.1416					9	6	2	0	0	0	0.026448	1	2903	2903		9.2118	3.2108	1	6980.2			50624	3711	41879	41910	54914	54914					0.13996973193184203
RPWLESPPQG	10	Unmodified	_RPWLESPPQG_					0	0	0		ENSG00000130487|ENST00000648057|KLHDC7B	ENSG00000130487|ENST00000648057|KLHDC7B	ENSG00000130487|ENST00000648057|KLHDC7B	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8029174804688	2	583.80128	1165.58801	0.97841	0.0005712	1.9394	0.0011322	2.9178	0.0017034	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.62299	2	1394	1391;1394		39.253	4.7437	1	155970			50625	3989	41880	41911	54915;54916	54916					0.011836462205110365
RPWLQAGI	8	Unmodified	_RPWLQAGI_					0	0	0		ENST00000447814.1_2_2:95830931-95831156:-|nuORF	ENST00000447814.1_2_2:95830931-95831156:-|nuORF	ENST00000447814.1_2_2:95830931-95831156:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.7877502441406	2	470.771794	939.529036	-0.15185	-7.1487E-05	-2.4869	-0.0011708	-2.6388	-0.0012423	470.77108001584105	40.717	0.41775	37.763	37.527	37.945	-2.9541					10	7	2	0	0	0	0.028476	1	1765	1765		33.516	0	1	45441			50626	12013	41881	41912	54917	54917					0.0568521471685699
RPWLQAKKR	9	Unmodified	_RPWLQAKKR_					0	0	0			REV__nc|ENSG00000135119|Q96EX2-2|RNFT2	REV__nc|ENSG00000135119|Q96EX2-2|RNFT2	MULTI-MSMS	OvCa9_classI_Rep3	3	591.86328125	2	591.864549	1181.71454	0.72408	0.00042856	-0.48902	-0.00028943	0.23506	0.00013913	591.8641978183085	65.182	2.2339	62.236	61.844	64.078	-2.9459					105	43	4	0	0	0	0.46377	1	2660	2660		45.952	7.1458	1	184170	+		50627	28867	41882	41913	54918	54918					0.13095617236285761
RPWRKTAALL	10	Unmodified	_RPWRKTAALL_					0	0	0		ENST00000445329.5_1_11:5618049-5624898:+|nuORF	ENST00000445329.5_1_11:5618049-5624898:+|nuORF	ENST00000445329.5_1_11:5618049-5624898:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3692626953125	2	606.372207	1210.72986	-2.264	-0.0013728	-2.13	-0.0012916	-4.394	-0.0026644	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.79213	1	12589	12589		19.997	0.89325	1	205770			50628	11976	41883	41914	54919	54919					0.13292484033490837
RPWRKTAALL	10	Unmodified	_RPWRKTAALL_					0	0	0		ENST00000445329.5_1_11:5618049-5624898:+|nuORF	ENST00000445329.5_1_11:5618049-5624898:+|nuORF	ENST00000445329.5_1_11:5618049-5624898:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.368896484375	2	606.372207	1210.72986	-1.3399	-0.00081245	-2.954	-0.0017912	-4.2938	-0.0026037	606.3703052098949	148.27	2.4393	146.84	145.43	147.87	-1.4351					149	49	5	0	0	0	0.73378	1	14602	14602		26.693	2.1737	1	591330			50629	11976	41883	41914	54920	54920					0.13292484033490837
RPWRVARERWR	11	Unmodified	_RPWRVARERWR_					0	0	0			REV__ENST00000436427.1_3_1:43148660-43161876:+|nuORF	REV__ENST00000436427.1_3_1:43148660-43161876:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.2669067382812	3	523.299153	1566.87563	1.0717	0.00056082	1.9149	0.001002	2.9866	0.0015629	523.3001833170631	42.644	0.49306	39.935	39.72	40.213	-2.7097					13	9	2	0	0	0	0.026505	1	2340	2340		5.6988	4.3769	1	14341	+		50630	25784	41884	41915	54921	54921					0.11486759602234997
RPWSNSRGL	9	Unmodified	_RPWSNSRGL_					0	0	0		ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	MULTI-MSMS	OvCa9_classI_Rep2	2	536.7860717773438	2	536.785964	1071.55738	-2.0409	-0.0010956	1.8972	0.0010184	-0.14376	-7.7167E-05	536.7868130662082	51.731	1.878	48.918	48.453	50.331	-2.8129					102	37	5	0	0	0	0.55011	1	3412	3412		37.812	0	1	394970			50631	8731	41885	41916	54922	54922					0.02445912626126301
RPWSNSRGL	9	Unmodified	_RPWSNSRGL_					0	0	0		ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	ENSG00000197622|ENST00000357235|CDC42SE1	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.7866821289062	2	536.785964	1071.55738	-1.1513	-0.00061799	0.85927	0.00046124	-0.29201	-0.00015675	536.7862821992293	52.078	1.9665	48.87	48.539	50.505	-3.208					94	38	5	0	0	0	0.16562	3	3105	3094;3105;3117		82.241	23.635	1	1350400			50632	8731	41885	41916	54923;54924;54925	54924					0.02445912626126301
RPYAIFALGP	10	Unmodified	_RPYAIFALGP_					0	0	0			REV__nc|ENSG00000010379|Q9NSD5-2|SLC6A13;REV__ENST00000485324.1_1_X:152958408-152959565:+|nuORF	REV__nc|ENSG00000010379|Q9NSD5-2|SLC6A13	MULTI-MSMS	OvCa9_classI_Rep3	3	552.811279296875	2	552.813659	1103.61277	-0.047925	-2.6494E-05	-3.7651	-0.0020814	-3.813	-0.0021079	552.8114623885908	70.961	1.4539	68.241	67.853	69.307	-2.7196					80	28	5	0	0	0	0.50656	1	3273	3273		53.351	12.573	1	253690	+		50633	16480;18976	41886	41917	54926	54926					0.06510326093916774
RPYAIFALGP	10	Unmodified	_RPYAIFALGP_					0	0	0			REV__nc|ENSG00000010379|Q9NSD5-2|SLC6A13;REV__ENST00000485324.1_1_X:152958408-152959565:+|nuORF	REV__nc|ENSG00000010379|Q9NSD5-2|SLC6A13	MULTI-MATCH	OvCa9_classI_Rep2	2		2	552.813659	1103.61277	1.1163	0.00061711	-5.4215	-0.0029971	-4.3052	-0.00238	552.8106978699459	70.776	1.0336	68.205	67.866	68.899	-2.5707	-0.1449	-0.0015127	NaN	53.351	46	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188890	+		50634	16480;18976	41886	41917							0.06510326093916774
RPYAIFALGP	10	Unmodified	_RPYAIFALGP_					0	0	0			REV__nc|ENSG00000010379|Q9NSD5-2|SLC6A13;REV__ENST00000485324.1_1_X:152958408-152959565:+|nuORF	REV__nc|ENSG00000010379|Q9NSD5-2|SLC6A13	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	552.813659	1103.61277	-0.047925	-2.6494E-05	-3.7651	-0.0020814	-3.813	-0.0021079	552.8114623885908	70.961	1.4539	68.241	67.853	69.307	-2.7196	-0.10886	0.00031871	NaN	53.351	80	28	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253690	+		50635	16480;18976	41886	41917							0.06510326093916774
RPYAIFALGP	10	Unmodified	_RPYAIFALGP_					0	0	0			REV__nc|ENSG00000010379|Q9NSD5-2|SLC6A13;REV__ENST00000485324.1_1_X:152958408-152959565:+|nuORF	REV__nc|ENSG00000010379|Q9NSD5-2|SLC6A13	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	552.813659	1103.61277	-1.0537	-0.00058252	-3.4814	-0.0019246	-4.5351	-0.0025071	552.8116862369579	72.06	1.1153	68.604	68.174	69.289	-3.4563	0.25375	0.00063239	NaN	53.351	53	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218260	+		50636	16480;18976	41886	41917							0.06510326093916774
RPYAVEVYV	9	Unmodified	_RPYAVEVYV_					0	0	0			REV__ENST00000373618.1_1_9:126520092-126692193:-|nuORF	REV__ENST00000373618.1_1_9:126520092-126692193:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	548.295166015625	2	548.295299	1094.57605	-1.4493	-0.00079464	1.5915	0.0008726	0.14219	7.7962E-05	548.2961982412694	34.285	4.3001	31.575	31.119	35.419	-2.7097					197	86	6	0	0	0	0.50149	1	1299	1299		42.396	6.7778	1	2359300	+		50637	16285	41887	41918	54927	54927					0.032540294773070855
RPYEPINSI	9	Unmodified	_RPYEPINSI_					0	0	0		ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	ENSG00000115207|ENST00000264720|GTF3C2	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.7864379882812	2	544.790381	1087.56621	-0.88381	-0.00048149	0.24155	0.0001316	-0.64226	-0.0003499	544.7903920824408	79.571	1.2068	76.82	76.562	77.769	-2.7514					60	24	3	0	0	0	0.075543	1	6460	6460		104.06	18.195	1	819980			50638	3068	41888	41919	54928	54928					0.025928414719373905
RPYGSHRE	8	Unmodified	_RPYGSHRE_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.3011474609375	2	501.249215	1000.48388	-1.3786	-0.00069102	0.50878	0.00025503	-0.86982	-0.000436	501.2490643410443	48.962	0.54343	46.202	46.028	46.572	-2.7603					17	10	3	0	0	0	0.028476	1	3103	3103		29.15	7.1897	1	24446			50639	1949	41889	41920	54929	54929					-0.016346358163445984
RPYHVFIRQII	11	Unmodified	_RPYHVFIRQII_					0	0	0			REV__nc|ENSG00000130159|Q9BQ95-4|ECSIT	REV__nc|ENSG00000130159|Q9BQ95-4|ECSIT	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.2818298339844	3	481.285739	1440.83539	-6.5406	-0.0031479	2.0344	0.00097915	-4.5062	-0.0021688	481.28689914588375	161.43	3.2893	159.81	158.56	161.85	-1.6239					191	83	3	0	0	0	0.72545	2	16020	15921;16020		9.6461	0.31984	1	100850	+		50640	18924	41890	41921	54930;54931	54931					0.13260400159106212
RPYKSELLRIL	11	Unmodified	_RPYKSELLRIL_					0	0	0			REV__HEATR1|p.G1956Wfs*9|1|0.04|ENSG00000119285|chr1:236555353-236555354|-/A|frameshift_variant	REV__HEATR1|p.G1956Wfs*9|1|0.04|ENSG00000119285|chr1:236555353-236555354|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.2821350097656	3	463.285516	1386.83472	-5.8612	-0.0027154	1.6961	0.00078577	-4.1652	-0.0019297	463.286310063936	157.61	2.41	156.07	155.1	157.51	-1.545					177	70	4	0	0	0	0.72493	1	15599	15599		16.53	3.0219	1	50651	+		50641	18433	41891	41922	54932	54932					0.15677560719404937
RPYLLWRE	8	Unmodified	_RPYLLWRE_					0	0	0			REV__ENST00000537745.5_1_12:131357614-131357677:+|nuORF	REV__ENST00000537745.5_1_12:131357614-131357677:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	566.8153076171875	2	566.816733	1131.61891	-0.034625	-1.9626E-05	-1.5781	-0.00089447	-1.6127	-0.0009141	566.8158254764281	108.92	2.4235	108.69	108.32	110.75	-0.22498					109	48	5	0	0	0	0.67745	1	10233	10233		47.916	0.25827	1	1117900	+		50642	27313	41892	41923	54933	54933					0.05836844325403945
RPYLSAVRATL	11	Unmodified	_RPYLSAVRATL_					0	0	0		nc|ENSG00000241553|P59998-2|ARPC4;ENST00000479956.1_1_3:9834805-9839462:+|nuORF;ENSG00000241553|ENST00000397261|ARPC4;ENST00000467289.5_1_3:9834805-9845712:+|nuORF;nc|ENSG00000241553|P59998-3|ARPC4	nc|ENSG00000241553|P59998-2|ARPC4;ENSG00000241553|ENST00000397261|ARPC4	ENSG00000241553|ENST00000397261|ARPC4	MULTI-MSMS	OvCa9_classI_Rep2	2	623.8673095703125	2	623.866954	1245.71936	-0.24401	-0.00015223	-3.1297	-0.0019525	-3.3738	-0.0021048	623.8668586508983	82.343	1.5404	80.714	80.302	81.843	-1.6287					119	30	7	0	0	0	0.31995	2	7009	7003;7009		66.962	32.789	1	524050			50643	9352;15339	41893	41924	54934;54935	54935					0.10632456588405148
RPYQKDCV	8	Unmodified	_RPYQKDCV_					0	0	0		ENSG00000144597|ENST00000396842|EAF1	ENSG00000144597|ENST00000396842|EAF1	ENSG00000144597|ENST00000396842|EAF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	504.77862548828125	2	504.750201	1007.48585	-0.56447	-0.00028492	-0.81982	-0.0004138	-1.3843	-0.00069872	504.7497449069558	58.34	0.6487	54.948	54.651	55.3	-3.392					24	12	3	0	0	0	0.028476	1	3809	3809		51.335	0	1	43734			50644	5165	41894	41925	54936	54936					-0.017593431227510337
RPYSQVNVL	9	Unmodified	_RPYSQVNVL_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN-WDR67|2|fusion;UTRN-WDR67|1|fusion	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OvCa9_classI_Rep3	3	538.298095703125	2	538.298373	1074.58219	0.13311	7.1654E-05	-0.2126	-0.00011444	-0.079486	-4.2787E-05	538.2979978262475	77.426	2.4453	75.073	74.104	76.549	-2.3527					75	47	2	0	0	0	0.22621	1	4044	4044		71.877	0.58177	1	1860100			50645	5647	41895	41926	54937	54937					0.047885477088584594
RPYSQVNVL	9	Unmodified	_RPYSQVNVL_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN-WDR67|2|fusion;UTRN-WDR67|1|fusion	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.2996826171875	2	538.298373	1074.58219	-0.75919	-0.00040867	0.29088	0.00015658	-0.46831	-0.00025209	538.2983423174609	78.231	1.7602	75.415	75.018	76.779	-2.8165					66	36	2	0	0	0	0.2422	1	6302	6302		69.628	8.6557	1	1911100			50646	5647	41895	41926	54938	54938					0.047885477088584594
RPYTNKVITL	10	Unmodified	_RPYTNKVITL_					0	0	0		ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13;nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;CDK12|p.E928Gfs*27|1|0.54|ENSG00000167258|chr17:39515740-39515741|-/G|frameshift_variant;nc|ENSG00000167258|Q9NYV4-3|CDK12	ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000167258|Q9NYV4-2|CDK12	nc|ENSG00000167258|Q9NYV4-2|CDK12	MULTI-MSMS	OvCa9_classI_Rep3	3	602.8561401367188	2	602.856055	1203.69756	2.2611	0.0013631	-2.3303	-0.0014048	-0.069175	-4.1703E-05	602.8544543064842	71.261	1.6459	68.658	68.074	69.72	-2.6023					101	32	5	0	0	0	0.26424	2	3333	3308;3333		85.161	22.675	1	817540			50647	6776;1339	41896	41927	54939;54940	54940					0.10385651839851562
RQAALARPAVP	11	Unmodified	_RQAALARPAVP_					0	0	0		ENSG00000141854|ENST00000587086|MISP3;ENST00000591982.1_1_19:14183815-14184703:+|nuORF	ENSG00000141854|ENST00000587086|MISP3	ENSG00000141854|ENST00000587086|MISP3	MULTI-MSMS	OvCa9_classI_Rep2	2	575.3455810546875	2	575.346189	1148.67783	-4.8723	-0.0028032	3.718	0.0021391	-1.1543	-0.00066411	575.3482857575835	154.87	1.1278	154.64	154.34	155.47	-0.22696					59	30	3	0	0	0	0.72473	1	15800	15800		19.104	1.7386	1	84487			50648	4941	41897	41928	54941	54941					0.10943320619730912
RQADKVWRL	9	Unmodified	_RQADKVWRL_					0	0	0		ENSG00000141905|ENST00000443272|NFIC;nc|ENSG00000141905|P08651-2|NFIC;NFIC-CELF5|12|fusion;NFIC-CELF5|11|fusion;NFIC-CELF5|13|fusion;nc|ENSG00000141905|P08651-5|NFIC;nc|ENSG00000141905|P08651-3|NFIC;nc|ENSG00000141905|P08651-6|NFIC;NFIC-CELF5|14|fusion;nc|ENSG00000162599|Q12857-2|NFIA;NFIC-CELF5|8|fusion;nc|ENSG00000162599|Q12857-4|NFIA;NFIC-CELF5|9|fusion;ENSG00000162599|ENST00000403491|NFIA;nc|ENSG00000162599|Q12857-3|NFIA;NFIC-CELF5|7|fusion;NFIX|p.C119G|1|0.15|ENSG00000008441|chr19:13025348-13025348|T/G|missense_variant;ENSG00000147862|ENST00000380953|NFIB;nc|ENSG00000147862|O00712-4|NFIB;nc|ENSG00000147862|O00712|NFIB;nc|ENSG00000141905|P08651-4|NFIC;NFIC-CELF5|2|fusion;NFIC-CELF5|1|fusion;nc|ENSG00000147862|O00712-2|NFIB;NFIC-CELF5|10|fusion;NFIX-CALR|1|fusion;NFIX-CALR|4|fusion;NFIX-CALR|2|fusion;NFIX-CALR|3|fusion;nc|ENSG00000008441|Q14938-6|NFIX;nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-3|NFIX;nc|ENSG00000008441|Q14938-2|NFIX;nc|ENSG00000008441|Q14938-4|NFIX;ENSG00000008441|ENST00000592199|NFIX	ENSG00000141905|ENST00000443272|NFIC;NFIX-CALR|1|fusion;NFIX-CALR|3|fusion	NFIX-CALR|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	586.3400268554688	2	586.338364	1170.66217	-0.67625	-0.00039651	0.27497	0.00016122	-0.40128	-0.00023529	586.3384735682532	53.232	0.69313	53.232	52.999	53.692	0					60	15	5	0	0	0	0.070405	2	4228	4207;4228		107.01	31.973	1	7265000			50649	4945;15428;15429	41898	41929	54942;54943	54943					0.08367034102707294
RQAELLFPV	9	Unmodified	_RQAELLFPV_					0	0	0			REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	REV__nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-MSMS	OvCa9_classI_Rep2	2	536.8074340820312	2	536.811116	1071.60768	0.23953	0.00012858	-4.4717	-0.0024004	-4.2321	-0.0022719	536.808594253858	65.887	1.3438	63.191	62.771	64.114	-2.6958					79	26	4	0	0	0	0.46377	1	5085	5085		45.952	3.5558	1	1324500	+		50650	19851	41899	41930	54944	54944					0.07474022231281197
RQAGQIKKLEV	11	Unmodified	_RQAGQIKKLEV_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	OvCa99_classI_Rep5	1	423.9263916015625	3	423.9261	1268.75647	-0.01469	-6.2273E-06	-0.3684	-0.00015617	-0.38308	-0.0001624	423.9259542650079	42.86	0.98164	42.86	42.583	43.565	0					60	22	5	0	0	0	0.082447	1	2784	2784		100.82	19.294	1	3209300			50651	7686	41900	41931	54945	54945					0.13284128134182538
RQAGQIKKLEV	11	Unmodified	_RQAGQIKKLEV_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	423.9261	1268.75647	-0.11847	-5.0223E-05	-5.6321	-0.0023876	-5.7506	-0.0024378	423.92356723349945	45.611	1.1989	42.901	42.348	43.547	-2.7097	-0.020708	-0.0056281	NaN	100.82	38	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33412			50652	7686	41900	41931							0.13284128134182538
RQAGQIKKLEV	11	Unmodified	_RQAGQIKKLEV_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	423.9261	1268.75647	-0.79322	-0.00033627	-5.4106	-0.0022937	-6.2038	-0.00263	423.9235983432495	46.077	1.2496	43.004	42.509	43.759	-3.0724	0.082337	-0.0053464	NaN	100.82	42	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39726			50653	7686	41900	41931							0.13284128134182538
RQAKREKRK	9	Unmodified	_RQAKREKRK_					0	0	0			REV__nc|ENSG00000271793|O60506-2|SYNCRIP	REV__nc|ENSG00000271793|O60506-2|SYNCRIP	MULTI-MSMS	OvCa9_classI_Rep2	2	600.3775634765625	2	600.375812	1198.73707	2.4727	0.0014845	-0.16603	-9.9683E-05	2.3067	0.0013849	600.3755689581569	26.426	0.84442	23.716	23.517	24.362	-2.7097					46	24	3	0	0	0	0.61365	1	366	366		16.473	0	1	69653	+		50654	19273	41901	41932	54946	54946					0.14565216633923228
RQAPGHHLR	9	Unmodified	_RQAPGHHLR_					0	0	0			REV__ENST00000395808.7_1_19:890970-891072:-|nuORF	REV__ENST00000395808.7_1_19:890970-891072:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.7947387695312	2	536.299573	1070.58459	-1.8781	-0.0010072	0.47752	0.00025609	-1.4006	-0.00075112	536.2995990058337	42.73	1.6536	39.722	39.237	40.891	-3.0074					39	31	2	0	0	0	0.027462	1	2039	2039		35.618	14.671	1	84367	+		50655	25320	41902	41933	54947	54947					0.05212440957166109
RQAPSIATI	9	Unmodified	_RQAPSIATI_					0	0	0		ENSG00000128591|ENST00000325888|FLNC;nc|ENSG00000128591|Q14315-2|FLNC	ENSG00000128591|ENST00000325888|FLNC	ENSG00000128591|ENST00000325888|FLNC	MULTI-MSMS	OvCa99_classI_Rep5	1	478.78118896484375	2	478.779816	955.545079	0.077823	3.726E-05	0.026113	1.2503E-05	0.10394	4.9762E-05	478.779722273364	70.622	0.62675	70.622	70.328	70.954	0					38	15	3	0	0	0	0.12515	1	6782	6782		90.37	10.657	1	3155600			50656	3890	41903	41934	54948	54948					0.0655287616308442
RQASDLHL	8	Unmodified	_RQASDLHL_					0	0	0			REV__ENSG00000234284|ENST00000444149|ZNF879	REV__ENSG00000234284|ENST00000444149|ZNF879	MULTI-MSMS	OvCa99_classI_Rep5	1	470.25390625	2	470.253966	938.493378	0.58334	0.00027432	1.1334	0.00053298	1.7167	0.0008073	470.2536111354727	45.448	0.73088	45.448	45.159	45.89	0					37	16	3	0	0	0	0.39692	1	3144	3144		88.643	3.2834	1	1505700	+		50657	23400	41904	41935	54949	54949					0.021671324691851623
RQASRGPNL	9	Unmodified	_RQASRGPNL_					0	0	0		ENST00000344111.3_1_7:1007687-1008335:-|nuORF	ENST00000344111.3_1_7:1007687-1008335:-|nuORF	ENST00000344111.3_1_7:1007687-1008335:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.294189453125	2	499.778139	997.541725	2.0416	0.0010204	2.8741	0.0014364	4.9157	0.0024568	499.77967416809855	74.957	0.53175	74.957	74.596	75.128	0					18	12	2	0	0	0	0.027447	1	7391	7391		47.657	7.0847	1	289800			50658	10607	41905	41936	54950	54950					0.042856261090946646
RQCNGPKAN	9	Unmodified	_RQCNGPKAN_					0	0	0		nc|ENSG00000156256|Q9Y5T5-3|USP16;nc|ENSG00000156256|Q9Y5T5-2|USP16;ENSG00000156256|ENST00000399976|USP16;nc|ENSG00000156256|Q9Y5T5-4|USP16	nc|ENSG00000156256|Q9Y5T5-3|USP16	nc|ENSG00000156256|Q9Y5T5-3|USP16	MULTI-MSMS	OvCa99_classI_Rep5	1	494.2446594238281	2	494.243075	986.471597	0.93545	0.00046234	4.184	0.0020679	5.1194	0.0025302	494.2449847229153	131.47	0.56425	131.47	131.2	131.76	0					25	11	3	0	0	0	0.68424	1	15264	15264		21.96	1.4781	1	157870			50659	5829	41906	41937	54951	54951					-0.022179955510296168
RQDDILKR	8	Unmodified	_RQDDILKR_					0	0	0		ENSG00000106305|ENST00000223029|AIMP2	ENSG00000106305|ENST00000223029|AIMP2	ENSG00000106305|ENST00000223029|AIMP2	MULTI-MSMS	OvCa99_classI_Rep5	1	522.30419921875	2	522.301447	1042.58834	-0.92916	-0.0004853	0.19892	0.0001039	-0.73024	-0.00038141	522.3016685667023	54.71	0.64493	54.71	54.505	55.15	0					24	14	3	0	0	0	0.69491	1	4445	4445		44.377	0	1	2716700			50660	2540	41907	41938	54952	54952					0.06875065940380409
RQDKRTVYV	9	Unmodified	_RQDKRTVYV_					0	0	0		nc|ENSG00000101972|Q8N3U4|STAG2;ENSG00000101972|ENST00000371145|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	nc|ENSG00000101972|Q8N3U4|STAG2	MULTI-MSMS	OvCa99_classI_Rep5	1	582.8281860351562	2	582.827829	1163.64111	-0.58944	-0.00034354	0.18429	0.00010741	-0.40514	-0.00023613	582.8279636513627	33.416	0.63996	33.416	33.136	33.776	0					31	12	4	0	0	0	0.3249	1	1532	1532		60.118	8.9256	1	278130			50661	2211	41908	41939	54953	54953					0.06583024003157334
RQDPTSQKV	9	Unmodified	_RQDPTSQKV_					0	0	0		ENST00000486520.1_1_21:48081621-48084236:+|nuORF;TIAL1-PRMT2|4|fusion;nc|ENSG00000160310|P55345-3|PRMT2;TIAL1-PRMT2|1|fusion;CSTF3-PRMT2|4|fusion;ENSG00000160310|ENST00000355680|PRMT2;CSTF3-PRMT2|1|fusion	ENST00000486520.1_1_21:48081621-48084236:+|nuORF	ENST00000486520.1_1_21:48081621-48084236:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	529.7826538085938	2	529.783087	1057.55162	-0.38886	-0.00020601	2.9552	0.0015656	2.5664	0.0013596	529.7829330601168	29.661	0.55039	29.661	29.486	30.036	0					14	10	2	0	0	0	0.26076	1	1081	1081		67.494	2.0283	1	238700			50662	690	41909	41940	54954	54954					0.025147693238068314
RQEEVSTKLH	10	Unmodified	_RQEEVSTKLH_					0	0	0			REV__ENST00000604516.1_1_6:79944081-79944252:+|nuORF	REV__ENST00000604516.1_1_6:79944081-79944252:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	613.828369140625	2	613.828026	1225.6415	-0.193	-0.00011847	0.011569	7.1013E-06	-0.18144	-0.00011137	613.827906147562	47.528	0.60442	47.528	47.336	47.941	0					28	13	3	0	0	0	0.44722	1	3434	3434		61.691	5.2575	1	1061100	+		50663	28060	41910	41941	54955	54955					0.03770398932374519
RQEPARSLQ	9	Unmodified	_RQEPARSLQ_					0	0	0			REV__tr|A0A7D6VQV9|A0A7D6VQV9_9CLOTReplicativeDNAhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23885PE=3SV=1	REV__tr|A0A7D6VQV9|A0A7D6VQV9_9CLOTReplicativeDNAhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23885PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	542.796142578125	2	542.796529	1083.5785	-2.2011	-0.0011947	3.5383	0.0019206	1.3372	0.00072582	542.7983627511975	142.92	1.1361	142.69	142.21	143.35	-0.22697					52	22	3	0	0	0	0.61208	1	14340	14340		30.504	0.6621	1	87156	+		50664	31361	41911	41942	54956	54956					0.04005877934991986
RQFPGSHRV	9	Unmodified	_RQFPGSHRV_					0	0	0		ENST00000517593.5_1_8:109455866-109468189:+|nuORF;ENSG00000104412|ENST00000220853|EMC2	ENST00000517593.5_1_8:109455866-109468189:+|nuORF	ENST00000517593.5_1_8:109455866-109468189:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	542.2941284179688	2	542.293956	1082.57336	-0.036613	-1.9855E-05	-0.3332	-0.00018069	-0.36982	-0.00020055	542.293672813763	33.05	0.98109	33.05	32.651	33.632	0					52	19	4	0	0	0	0.2422	1	1481	1481		69.628	3.1983	1	570340			50665	2374	41912	41943	54957	54957					0.03537618863038006
RQFSGARNQL	10	Unmodified	_RQFSGARNQL_					0	0	0		nc|ENSG00000060138|P16989-3|YBX3;ENSG00000060138|ENST00000228251|YBX3	nc|ENSG00000060138|P16989-3|YBX3	nc|ENSG00000060138|P16989-3|YBX3	MULTI-MSMS	OvCa99_classI_Rep5	1	588.8152465820312	2	588.815253	1175.61595	-0.25807	-0.00015195	0.40838	0.00024046	0.15031	8.8506E-05	588.8153906957797	40.935	0.75775	40.935	40.573	41.33	0					38	16	4	0	0	0	0.52439	1	2515	2515		51.193	10.415	1	715390			50666	1259	41913	41944	54958	54958					0.0351696920060931
RQFSTPFQL	9	Unmodified	_RQFSTPFQL_					0	0	0		nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ;POGZ|p.F673*|1|0.43|ENSG00000143442|chr1:151408733-151408737|ACGGA/-|frameshift_variant	nc|ENSG00000143442|Q7Z3K3-5|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	MULTI-MSMS	OvCa99_classI_Rep5	1	562.2998657226562	2	562.298373	1122.58219	1.0891	0.00061241	0.52919	0.00029756	1.6183	0.00090997	562.2985969904474	105.6	1.0528	105.6	105.09	106.14	0					49	23	4	0	0	0	0.1574	1	11856	11856		83.647	3.9344	1	4943900			50667	5055	41914	41945	54959	54959					0.025805477088624684
RQGANINEI	9	Unmodified	_RQGANINEI_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	507.77008056640625	2	507.76998	1013.52541	-0.33247	-0.00016882	0.22339	0.00011343	-0.10908	-5.5386E-05	507.77004248362385	54.068	1.2531	54.068	53.854	55.107	0					45	29	2	0	0	0	0.068524	2	4363	4331;4363		108.09	3.3409	1	7524800			50668	7018	41915	41946	54960;54961	54961					0.019185001523283063
RQGASFLGI	9	Unmodified	_RQGASFLGI_					0	0	0		nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000105357|Q7Z406-4|MYH14;nc|ENSG00000105357|Q7Z406|MYH14;nc|ENSG00000105357|Q7Z406-6|MYH14;ENSG00000105357|ENST00000642316|MYH14;nc|ENSG00000133392|P35749-4|MYH11;nc|ENSG00000133392|P35749-3|MYH11;ENSG00000133392|ENST00000300036|MYH11;nc|ENSG00000133392|P35749-2|MYH11	nc|ENSG00000105357|Q7Z406-5|MYH14;nc|ENSG00000133392|P35749-4|MYH11	nc|ENSG00000133392|P35749-4|MYH11	MULTI-MSMS	OvCa99_classI_Rep5	1	474.7682189941406	2	474.766709	947.518865	2.7299	0.0012961	-0.096985	-4.6045E-05	2.6329	0.00125	474.7664628010295	87.876	0.92205	87.876	87.586	88.508	0					43	21	4	0	0	0	0.16562	1	9322	9322		82.241	0	1	7176800			50669	4218;2445	41916	41947	54962	54962					0.04300606991614586
RQGDLITHV	9	Unmodified	_RQGDLITHV_					0	0	0		nc|ENSG00000086015|Q6P0Q8-2|MAST2;MAST2|p.P1758Qfs*3|1|0.13|ENSG00000086015|chr1:46035942-46035967|CATGCCGAGGCTGCCCCCTCACCCAG/-|frameshift_variant;ENSG00000086015|ENST00000361297|MAST2;MAST2|p.G1204Afs*79|1|0.12|ENSG00000086015|chr1:46033873-46033873|G/-|frameshift_variant;MAST2|p.G1261Wfs*149|1|0.07|ENSG00000086015|chr1:46034177-46034178|-/C|frameshift_variant;MAST2|p.K1410Pfs*14|1|0.08|ENSG00000086015|chr1:46034896-46034897|-/CC|frameshift_variant	nc|ENSG00000086015|Q6P0Q8-2|MAST2	nc|ENSG00000086015|Q6P0Q8-2|MAST2	MULTI-MSMS	OvCa99_classI_Rep5	1	519.7876586914062	2	519.788173	1037.56179	-0.92431	-0.00048045	-0.16997	-8.8346E-05	-1.0943	-0.00056879	519.7883451191406	55.213	0.57953	55.213	54.98	55.559	0					23	13	2	0	0	0	0.3076	1	4502	4502		62.107	10.772	1	2283500			50670	1746	41917	41948	54963	54963					0.0445137704903118
RQGEVVQRL	9	Unmodified	_RQGEVVQRL_					0	0	0		NELFB|p.T330Nfs*25|1|0.86|ENSG00000188986|chr9:137265969-137265969|C/-|frameshift_variant;nc|ENSG00000188986|Q8WX92|NELFB;ENSG00000188986|ENST00000343053|NELFB	NELFB|p.T330Nfs*25|1|0.86|ENSG00000188986|chr9:137265969-137265969|C/-|frameshift_variant	NELFB|p.T330Nfs*25|1|0.86|ENSG00000188986|chr9:137265969-137265969|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	542.8150024414062	2	542.814722	1083.61489	-0.95159	-0.00051654	0.61571	0.00033422	-0.33588	-0.00018232	542.8150562717187	43.544	0.76813	43.544	43.312	44.08	0					52	17	4	0	0	0	0.094616	2	2896	2874;2896		98.629	5.4861	1	3642900			50671	8522	41918	41949	54964;54965	54965					0.07642754831704224
RQGLADRIID	10	Unmodified	_RQGLADRIID_					0	0	0			REV__GANAB|p.F831Rfs*67|1|0.13|ENSG00000089597|chr11:62626594-62626595|-/CTCCATCTCAA|frameshift_variant	REV__GANAB|p.F831Rfs*67|1|0.13|ENSG00000089597|chr11:62626594-62626595|-/CTCCATCTCAA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	578.8267211914062	2	578.825286	1155.63602	-0.13572	-7.8561E-05	0.0045813	2.6517E-06	-0.13114	-7.5909E-05	578.8252551312614	52.718	0.65239	52.718	52.478	53.131	0					41	14	4	0	0	0	0.55109	1	4142	4142		47.96	1.9873	1	2354900	+		50672	28149	41919	41950	54966	54966					0.06442720140557867
RQGNTKQRI	9	Unmodified	_RQGNTKQRI_					0	0	0		ENSG00000092820|ENST00000367075|EZR;nc|ENSG00000137710|P35241-3|RDX;ENST00000486888.1_1_3:104222020-104222107:+|nuORF;ENST00000532461.5_1_11:110102596-110108435:-|nuORF;ENSG00000147065|ENST00000360270|MSN	ENSG00000092820|ENST00000367075|EZR;ENSG00000147065|ENST00000360270|MSN	ENSG00000092820|ENST00000367075|EZR	MULTI-MSMS	OvCa99_classI_Rep5	1	550.8178100585938	2	550.817796	1099.62104	-0.40024	-0.00022046	-0.012116	-6.6736E-06	-0.41235	-0.00022713	550.8178523914296	23.016	0.98193	23.016	22.854	23.836	0					54	19	5	0	0	0	0.1944	1	294	294		77.318	0.54344	1	3720400			50673	1900;5327	41920	41951	54967	54967					0.07521273063230183
RQGSLQLLHLT	11	Unmodified	_RQGSLQLLHLT_					0	0	0			REV__nc|ENSG00000067369|Q12888|TP53BP1	REV__nc|ENSG00000067369|Q12888|TP53BP1	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3758544921875	2	633.369861	1264.72517	-4.5141	-0.0028591	3.4388	0.002178	-1.0753	-0.00068108	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.70865	1	15707	15707		26.693	5.746	1	369460	+		50674	16833	41921	41952	54968	54968					0.10339555100085818
RQGVLGIKV	9	Unmodified	_RQGVLGIKV_					0	0	0		ENST00000421346.1_1_20:37166917-37166977:+|nuORF;ENST00000433853.1_1_3:183867695-183868220:+|nuORF;ENSG00000149273|ENST00000531188|RPS3;nc|ENSG00000149273|P23396-2|RPS3	ENST00000421346.1_1_20:37166917-37166977:+|nuORF	ENST00000421346.1_1_20:37166917-37166977:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	485.3147277832031	2	485.313826	968.613099	-0.54979	-0.00026682	0.90417	0.00043881	0.35438	0.00017199	485.31406596961307	69.572	1.4535	69.572	69.228	70.681	0					103	35	5	0	0	0	0.10363	1	6634	6634		96.19	10.831	1	39494000			50675	5450	41922	41953	54969	54969					0.12753745813745354
RQHAYEHSL	9	Unmodified	_RQHAYEHSL_					0	0	0		PLIN3|p.Q335Lfs*60|1|0.19|ENSG00000105355|chr19:4839495-4839496|-/CTGGAGT|frameshift_variant;nc|ENSG00000105355|O60664-4|PLIN3;nc|ENSG00000105355|O60664-3|PLIN3;ENSG00000105355|ENST00000221957|PLIN3;nc|ENSG00000105355|O60664-2|PLIN3	PLIN3|p.Q335Lfs*60|1|0.19|ENSG00000105355|chr19:4839495-4839496|-/CTGGAGT|frameshift_variant	PLIN3|p.Q335Lfs*60|1|0.19|ENSG00000105355|chr19:4839495-4839496|-/CTGGAGT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	570.7804565429688	2	570.780879	1139.5472	-0.0012468	-7.1165E-07	-0.183	-0.00010445	-0.18424	-0.00010516	570.780592643095	31.634	0.6454	31.634	31.41	32.055	0					24	12	4	0	0	0	0.10363	1	1318	1318		96.19	13.95	1	458540			50676	2444	41923	41954	54970	54970					-0.01698695099116776
RQHEIILKA	9	Unmodified	_RQHEIILKA_					0	0	0		nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1;YLPM1|p.P1538Hfs*3|1|0.17|ENSG00000119596|chr14:74809470-74809471|-/AT|frameshift_variant	nc|ENSG00000119596|P49750-3|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	MULTI-MSMS	OvCa99_classI_Rep5	1	554.3348388671875	2	554.33529	1106.65603	-0.52851	-0.00029297	0.23086	0.00012797	-0.29765	-0.000165	554.3355157523787	42.329	0.98526	42.329	41.897	42.883	0					77	22	6	0	0	0	0.1804	1	2718	2718		79.713	24.936	1	2383200			50677	3372	41924	41955	54971	54971					0.10696515871177326
RQHFVYDHV	9	Unmodified	_RQHFVYDHV_					0	0	0		ENSG00000140743|ENST00000268383|CDR2	ENSG00000140743|ENST00000268383|CDR2	ENSG00000140743|ENST00000268383|CDR2	MULTI-MSMS	OvCa99_classI_Rep5	1	400.86871337890625	3	400.868473	1199.58359	1.0762	0.00043143	-1.1939	-0.00047859	-0.11766	-4.7164E-05	400.86799557648857	47.875	0.817	47.875	47.595	48.412	0					46	18	4	0	0	0	0.1149	1	3476	3476		93.143	43.607	1	2250600			50678	4872	41925	41956	54972	54972					-0.008218182024165799
RQHKSLSSSH	10	Unmodified	_RQHKSLSSSH_					0	0	0			REV__ENSG00000234284|ENST00000444149|ZNF879;REV__ENSG00000173258|ENST00000309235|ZNF483	REV__ENSG00000173258|ENST00000309235|ZNF483	MULTI-MSMS	OvCa9_classI_Rep2	2	583.8023681640625	2	583.804885	1165.59522	-1.251	-0.00073034	-3.0138	-0.0017594	-4.2648	-0.0024898	583.8030699874896	54.091	2.1426	51.277	50.677	52.82	-2.8139					121	42	5	0	0	0	0.61634	1	3693	3693		40.058	0.80534	1	1035800	+		50679	21760;23400	41926	41957	54973	54973					0.019043788209501145
RQHLEYPKE	9	Unmodified	_RQHLEYPKE_					0	0	0			REV__nc|ENSG00000243660|B1APH4|ZNF487	REV__nc|ENSG00000243660|B1APH4|ZNF487	MULTI-MSMS	OvCa99_classI_Rep5	1	400.54681396484375	3	400.543767	1198.60947	1.4218	0.00056947	2.1039	0.0008427	3.5256	0.0014122	400.54442785026885	62.143	0.87822	62.143	61.743	62.621	0					52	20	3	0	0	0	0.37135	1	5520	5520		61.691	18.827	1	1625000	+		50680	29160	41927	41958	54974	54974					0.01811031249235384
RQHLEYPKE	9	Unmodified	_RQHLEYPKE_					0	0	0			REV__nc|ENSG00000243660|B1APH4|ZNF487	REV__nc|ENSG00000243660|B1APH4|ZNF487	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	400.543767	1198.60947	1.4218	0.00056947	2.1039	0.0008427	3.5256	0.0014122	400.54442785026885	62.143	0.87822	62.143	61.743	62.621	0	0	0	NaN	61.691	52	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1625000	+		50681	29160	41927	41958							0.01811031249235384
RQHLQEVGL	9	Unmodified	_RQHLQEVGL_					0	0	0		ENSG00000167986|ENST00000301764|DDB1;ENST00000451943.6_1_11:61067610-61070297:-|nuORF;ENST00000538470.2_1_11:61067610-61070684:-|nuORF;nc|ENSG00000167986|Q16531-2|DDB1	ENSG00000167986|ENST00000301764|DDB1	ENSG00000167986|ENST00000301764|DDB1	MULTI-MSMS	OvCa99_classI_Rep5	1	540.3021850585938	2	540.301447	1078.58834	-0.43846	-0.0002369	0.23949	0.00012939	-0.19897	-0.0001075	540.3013467417427	55.457	0.61095	55.457	55.193	55.804	0					33	14	4	0	0	0	0.3076	1	4544	4544		62.107	7.3311	1	2347700			50682	6859	41928	41959	54975	54975					0.05219065940377732
RQHQQPFQV	9	Unmodified	_RQHQQPFQV_					0	0	0		nc|ENSG00000143970|Q76L83-2|ASXL2;ENSG00000143970|ENST00000435504|ASXL2	nc|ENSG00000143970|Q76L83-2|ASXL2	nc|ENSG00000143970|Q76L83-2|ASXL2	MULTI-MSMS	OvCa99_classI_Rep5	1	584.3049926757812	2	584.304521	1166.59449	-0.65828	-0.00038464	0.58281	0.00034054	-0.075472	-4.4098E-05	584.304726203703	48.576	0.69856	48.576	48.332	49.031	0					34	15	3	0	0	0	0.13482	1	3565	3565		87.754	12.711	1	1000700			50683	5112	41929	41960	54976	54976					0.017855841718755983
RQHVIDVQI	9	Unmodified	_RQHVIDVQI_					0	0	0		nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.E3356Afs*12|1|0.31|ENSG00000151914|chr6:56535225-56535226|-/CCAG|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;DST|p.A2546Pfs*8|1|0.39|ENSG00000151914|chr6:56560327-56560327|C/-|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001|DST	MULTI-MSMS	OvCa99_classI_Rep5	1	554.3187866210938	2	554.317097	1106.61964	0.43974	0.00024376	-0.43567	-0.0002415	0.004075	2.2589E-06	554.3168016757511	72.652	0.9055	72.652	72.208	73.113	0					37	18	3	0	0	0	0.11322	1	7092	7092		93.598	13.885	1	3471500			50684	5594;15096	41930	41961	54977	54977					0.07059638974465088
RQHVLTRI	8	Unmodified	_RQHVLTRI_					0	0	0		ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000111642|Q14839-2|CHD4;ENSG00000111642|ENST00000544040|CHD4	ENSG00000116254|ENST00000262450|CHD5;nc|ENSG00000111642|Q14839-2|CHD4	nc|ENSG00000111642|Q14839-2|CHD4	MULTI-MSMS	OvCa99_classI_Rep5	1	511.8142395019531	2	511.814525	1021.6145	-0.40254	-0.00020603	-0.29126	-0.00014907	-0.6938	-0.0003551	511.81436473520563	39.174	0.69672	39.174	38.972	39.669	0					41	15	4	0	0	0	0.4531	2	2296	2273;2296		82.241	21.269	1	3044200			50685	14960;3168	41931	41962	54978;54979	54979					0.10455379902498407
RQHWTMTKI	9	Unmodified	_RQHWTMTKI_					0	0	0		TRIM28-CSMD1|1|fusion;ENST00000601150.5_1_19:59059168-59060232:+|nuORF;nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28	TRIM28-CSMD1|1|fusion	TRIM28-CSMD1|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	400.8825378417969	3	400.881725	1199.62335	1.0929	0.00043811	-0.73786	-0.0002958	0.35501	0.00014232	400.88140240738824	52.277	1.2107	52.277	51.788	52.999	0					78	27	4	0	0	0	0.075543	2	4074	4074;4096		109.44	22.557	1	5622500			50686	36275	41932	41963	54980;54981	54980					0.03151985476665686
RQHWTMTKI	9	Unmodified	_RQHWTMTKI_					0	0	0		TRIM28-CSMD1|1|fusion;ENST00000601150.5_1_19:59059168-59060232:+|nuORF;nc|ENSG00000130726|Q13263-2|TRIM28;ENSG00000130726|ENST00000253024|TRIM28	TRIM28-CSMD1|1|fusion	TRIM28-CSMD1|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	600.8204345703125	2	600.81895	1199.62335	-0.1581	-9.4989E-05	0.078623	4.7238E-05	-0.079476	-4.7751E-05	600.8188639854678	52.26	0.70326	52.26	52.038	52.741	0					40	15	4	0	0	0	0.13504	1	4084	4084		87.696	34.76	1	1182800			50687	36275	41932	41963	54982	54982					0.03151985476665686
RQIDRQNRL	9	Unmodified	_RQIDRQNRL_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;FNDC3B|p.D417*|1|0.11|ENSG00000075420|chr3:172310875-172310876|-/T|frameshift_variant	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	OvCa99_classI_Rep5	1	599.8414306640625	2	599.841802	1197.66905	0.20293	0.00012173	-0.86482	-0.00051876	-0.66189	-0.00039703	599.8413813451205	31.004	1.3737	31.004	30.632	32.006	0					74	27	4	0	0	0	0.16264	1	1235	1235		87.754	5.5138	1	2798300			50688	1532	41933	41964	54983	54983					0.0781234698326898
RQIEYEYKL	9	Unmodified	_RQIEYEYKL_					0	0	0		ENST00000504788.5_1_5:126112928-126171953:+|nuORF;ENSG00000113368|ENST00000261366|LMNB1;LMNB1|p.E568Tfs*24|1|0.43|ENSG00000113368|chr5:126832782-126832783|-/GACTCTGTCTCCAAAAAAAGGGATGAATAAT|frameshift_variant	ENST00000504788.5_1_5:126112928-126171953:+|nuORF	ENST00000504788.5_1_5:126112928-126171953:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	621.3314208984375	2	621.32987	1240.64519	-1.1035	-0.00068562	0.62717	0.00038968	-0.4763	-0.00029594	621.3301751587773	69.771	0.69605	69.771	69.513	70.21	0					44	16	4	0	0	0	0.1243	1	6649	6649		90.601	10.662	1	3301000			50689	2969	41934	41965	54984	54984					0.03449068706231628
RQIGQRTI	8	Unmodified	_RQIGQRTI_					0	0	0		ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	MULTI-MSMS	OvCa99_classI_Rep5	1	486.2901916503906	2	486.290882	970.567212	-0.51258	-0.00024926	0.34994	0.00017017	-0.16264	-7.9091E-05	486.2908986809521	35.965	0.73483	35.965	35.753	36.487	0					49	15	5	0	0	0	0.48084	1	1852	1852		79.451	5.4763	1	2245500			50690	2919	41935	41966	54985	54985					0.08075100631526766
RQIIDAINKV	10	Unmodified	_RQIIDAINKV_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	585.3549194335938	2	585.35368	1168.69281	-0.15836	-9.2697E-05	-0.49355	-0.0002889	-0.65191	-0.0003816	585.3534354979967	72.896	1.4088	72.896	72.574	73.983	0					88	35	4	0	0	0	0.083353	2	7132	7132;7163		117.81	21.777	1	23515000			50691	6293	41936	41967	54986;54987	54986					0.11520767697084011
RQIILDLQI	9	Unmodified	_RQIILDLQI_					0	0	0		nc|ENSG00000117868|A0FGR8-4|ESYT2;ENSG00000117868|ENST00000275418|ESYT2;nc|ENSG00000117868|A0FGR8-2|ESYT2;nc|ENSG00000117868|A0FGR8|ESYT2;nc|ENSG00000117868|A0FGR8-6|ESYT2	nc|ENSG00000117868|A0FGR8-4|ESYT2	nc|ENSG00000117868|A0FGR8-4|ESYT2	MULTI-MSMS	OvCa99_classI_Rep5	1	556.34423828125	2	556.345323	1110.67609	2.0784	0.0011563	0.20449	0.00011377	2.2829	0.0012701	556.3453193355933	122.49	0.68617	122.49	122.27	122.95	0					36	14	4	0	0	0	0.2422	1	14098	14098		69.628	0.8408	1	742400			50692	3281	41937	41968	54988	54988					0.12518266811139256
RQIKSFRV	8	Unmodified	_RQIKSFRV_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	OvCa99_classI_Rep5	1	517.316162109375	2	517.3169	1032.61925	-0.68212	-0.00035287	-0.011462	-5.9296E-06	-0.69358	-0.0003588	517.3168564292578	40.576	1.266	40.576	40.154	41.42	0					64	27	5	0	0	0	0.35821	1	2459	2459		96.19	16.739	1	4093800			50693	8736	41938	41969	54989	54989					0.10424264045263953
RQIPYTMMK	9	Oxidation (M)	_RQIPYTMM(Oxidation (M))K_		RQIPYTM(0.008)M(0.992)K		RQIPYTM(-21)M(21)K	0	0	1		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	592.302734375	2	592.301744	1182.58893	-0.73573	-0.00043577	0.80451	0.00047651	0.068787	4.0743E-05	592.3020126327639	54.508	0.97409	51.261	50.979	51.953	-3.2474					56	18	5	0	0	0	0.3249	1	3387	3387		60.118	8.9256	2	443840			50694	1531	41939	41970	54990	54990		54			0.004944012735677461
RQIPYTMMK	9	Oxidation (M)	_RQIPYTMM(Oxidation (M))K_					0	0	1		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	592.301744	1182.58893	-1.5542	-0.00092057	1.4341	0.00084944	-0.12008	-7.1125E-05	592.3023839949087	54.213	0.79679	51.399	51.075	51.872	-2.8139	0.06921	0.00038644	NaN	60.118	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100020			50695	1531	41939	41970				54			0.004944012735677461
RQIRKRLIL	9	Unmodified	_RQIRKRLIL_					0	0	0		ENSG00000156804|ENST00000517956|FBXO32;ENST00000287396.2_1_8:124515615-124544254:-|nuORF;nc|ENSG00000156804|Q969P5-2|FBXO32;ENST00000524000.5_1_8:124515615-124518835:-|nuORF	ENSG00000156804|ENST00000517956|FBXO32	ENSG00000156804|ENST00000517956|FBXO32	MULTI-MSMS	OvCa99_classI_Rep5	1	598.4091796875	2	598.409124	1194.80369	-0.48489	-0.00029017	0.53708	0.00032139	0.052181	3.1226E-05	598.4093788707005	42.303	0.98868	42.303	41.982	42.97	0					61	22	4	0	0	0	0.31747	2	2701	2701;2730		60.972	4.2509	1	2158700			50696	5858	41940	41971	54991;54992	54991					0.2140845219585117
RQISEGVEYI	10	Unmodified	_RQISEGVEYI_					0	0	0		nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-11|MYLK;nc|ENSG00000065534|Q15746-7|MYLK;nc|ENSG00000065534|Q15746-9|MYLK	nc|ENSG00000065534|Q15746-5|MYLK	nc|ENSG00000065534|Q15746-5|MYLK	MULTI-MSMS	OvCa99_classI_Rep5	1	597.3126831054688	2	597.311677	1192.6088	1.6405	0.00097987	0.30804	0.000184	1.9485	0.0011639	597.3116985118654	80.849	0.76024	80.849	80.487	81.248	0					37	17	3	0	0	0	0.36605	1	8299	8299		72.879	32.101	1	4035000			50697	1330	41941	41972	54993	54993					0.02020191809538119
RQKAVSLFL	9	Unmodified	_RQKAVSLFL_					0	0	0		ENSG00000126709|ENST00000361157|IFI6;nc|ENSG00000126709|P09912-2|IFI6;nc|ENSG00000126709|P09912-3|IFI6	ENSG00000126709|ENST00000361157|IFI6	ENSG00000126709|ENST00000361157|IFI6	MULTI-MSMS	OvCa99_classI_Rep5	1	531.3280639648438	2	531.326934	1060.63931	2.1051	0.0011185	-0.92586	-0.00049193	1.1792	0.00062656	531.326388554763	80.162	3.2752	80.162	79.119	82.394	0					214	79	5	0	0	0	0.21231	7	8140	8075;8106;8140;8173;8202;8231;8288		74.255	19.479	1	30615000			50698	3793	41942	41973	54994;54995;54996;54997;54998;54999;55000	54996					0.1114201498521652
RQKDSLDAK	9	Unmodified	_RQKDSLDAK_					0	0	0			REV__nc|ENSG00000182329|Q0VF49|KIAA2012	REV__nc|ENSG00000182329|Q0VF49|KIAA2012	MULTI-MSMS	OvCa99_classI_Rep5	1	530.795166015625	2	530.790912	1059.56727	-0.53713	-0.0002851	0.98411	0.00052236	0.44699	0.00023726	530.7910436961107	41.529	0.78702	41.529	41.195	41.982	0					43	17	3	0	0	0	0.37135	1	2599	2599		54.776	1.8396	1	1579800	+		50699	22283	41943	41974	55001	55001					0.03987055840843823
RQKEAERV	8	Unmodified	_RQKEAERV_					0	0	0		ENSG00000196526|ENST00000420658|AFAP1;ENST00000513842.1_1_4:7765494-7800689:-|nuORF;nc|ENSG00000196526|Q8N556|AFAP1;ENST00000505447.5_1_4:7765494-7780765:-|nuORF	ENSG00000196526|ENST00000420658|AFAP1	ENSG00000196526|ENST00000420658|AFAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.2857360839844	2	508.285797	1014.55704	-0.14356	-7.297E-05	0.075024	3.8133E-05	-0.068537	-3.4837E-05	508.2857457527713	22.771	0.52682	22.771	22.617	23.144	0					19	11	2	0	0	0	0.38806	1	248	248		90.37	16.115	1	485630			50700	8620	41944	41975	55002	55002					0.050344929062816846
RQKEFDPTI	9	Unmodified	_RQKEFDPTI_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-3|CALD1	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	567.3021850585938	2	567.301113	1132.58767	-0.21997	-0.00012479	-0.81475	-0.00046221	-1.0347	-0.000587	567.3006852173389	58.912	2.4584	58.912	58.613	61.071	0					174	61	6	0	0	0	0.1149	1	5075	5075		93.143	16.974	1	116410000			50701	3559	41945	41976	55003	55003					0.026682265006684247
RQKEFFDSV	9	Unmodified	_RQKEFFDSV_					0	0	0		ENSG00000124831|ENST00000308482|LRRFIP1;DIS3L2-LRRFIP1|1|fusion	ENSG00000124831|ENST00000308482|LRRFIP1	ENSG00000124831|ENST00000308482|LRRFIP1	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2872924804688	2	578.293288	1154.57202	-7.6021	-0.0043963	1.2846	0.00074285	-6.3176	-0.0036534	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.63422	1	13371	13371		27.882	1.1893	1	1429200			50702	738	41946	41977	55004	55004					0.0009193998362206912
RQKEIPRV	8	Unmodified	_RQKEIPRV_					0	0	0		nc|ENSG00000130816|P26358-3|DNMT1;nc|ENSG00000130816|P26358|DNMT1;ENSG00000130816|ENST00000359526|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	nc|ENSG00000130816|P26358-3|DNMT1	MULTI-MSMS	OvCa99_classI_Rep5	1	513.3140869140625	2	513.314358	1024.61416	-1.1651	-0.00059805	0.68267	0.00035043	-0.4824	-0.00024762	513.3146988985782	34.475	0.94007	34.475	34.209	35.149	0					40	19	3	0	0	0	0.42405	1	1668	1668		85.161	13.865	1	417170			50703	4019	41947	41978	55005	55005					0.10283960182664487
RQKEITDGI	9	Unmodified	_RQKEITDGI_					0	0	0		ENST00000488265.1_1_7:149545263-149547465:+|nuORF;ENSG00000106479|ENST00000223210|ZNF862	ENST00000488265.1_1_7:149545263-149547465:+|nuORF	ENST00000488265.1_1_7:149545263-149547465:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	530.2933349609375	2	530.293288	1058.57202	0.29825	0.00015816	-0.66036	-0.00035019	-0.36212	-0.00019203	530.2928720873693	46.084	0.78747	46.084	45.8	46.587	0					38	17	4	0	0	0	0.1944	1	3229	3229		77.318	23.966	1	766960			50704	2556	41948	41979	55006	55006					0.04507939983614051
RQKELRKELEL	11	Unmodified	_RQKELRKELEL_					0	0	0			REV__ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant	REV__ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.2823181152344	3	481.287697	1440.84126	-6.5406	-0.0031479	-2.0333	-0.00097859	-8.5739	-0.0041265	481.28689914588375	161.43	3.2893	159.81	158.56	161.85	-1.6239					191	83	3	0	0	0	0.72502	1	16070	16070		15.337	5.6913	1	100850	+		50705	23017	41949	41980	55007	55007					0.13847453880180183
RQKGKKSCK	9	Unmodified	_RQKGKKSCK_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.P2471Lfs*35|1|0.08|ENSG00000118058|chr11:118503312-118503312|C/-|frameshift_variant	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8160400390625	2	531.813667	1061.61278	-0.70053	-0.00037255	0.072663	3.8643E-05	-0.62786	-0.00033391	532.3141153069843	135.98	3.1366	134.88	133.72	136.85	-1.1076					103	63	4	0	0	0	0.56889	1	11058	11058		35.618	11.099	1	72410			50706	3286	41950	41981	55008	55008					0.08444002822238872
RQKKKTLLV	9	Unmodified	_RQKKKTLLV_					0	0	0		SIDT2|p.A704Vfs*9|1|0.03|ENSG00000149577|chr11:117193158-117193159|CC/-|frameshift_variant;ENSG00000149577|ENST00000324225|SIDT2;nc|ENSG00000149577|Q8NBJ9-2|SIDT2	SIDT2|p.A704Vfs*9|1|0.03|ENSG00000149577|chr11:117193158-117193159|CC/-|frameshift_variant	SIDT2|p.A704Vfs*9|1|0.03|ENSG00000149577|chr11:117193158-117193159|CC/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	557.3760986328125	2	557.376958	1112.73936	0.38546	0.00021485	-1.152	-0.00064211	-0.76656	-0.00042726	557.3762945390034	31.881	0.69567	31.881	31.708	32.403	0					31	13	4	0	0	0	0.33652	1	1344	1344		58.782	19.976	1	1012200			50707	5476	41951	41982	55009	55009					0.18750252319046012
RQKKLEKV	8	Unmodified	_RQKKLEKV_					0	0	0		ENSG00000112079|ENST00000229812|STK38	ENSG00000112079|ENST00000229812|STK38	ENSG00000112079|ENST00000229812|STK38	MULTI-MSMS	OvCa99_classI_Rep5	1	514.832275390625	2	514.832383	1027.65021	-0.59577	-0.00030672	0.36865	0.00018979	-0.22712	-0.00011693	514.8324423885866	24.311	0.44848	24.311	24.137	24.586	0					20	8	3	0	0	0	0.73205	1	431	431		35.618	0	1	398910			50708	2875	41952	41983	55010	55010					0.13749417359508698
RQKLKEHLL	9	Unmodified	_RQKLKEHLL_					0	0	0		nc|ENSG00000136108|Q8WWK9-4|CKAP2;ENSG00000136108|ENST00000258607|CKAP2;nc|ENSG00000136108|Q8WWK9|CKAP2;ENST00000468284.1_2_13:53029649-53035208:+|nuORF	nc|ENSG00000136108|Q8WWK9-4|CKAP2	nc|ENSG00000136108|Q8WWK9-4|CKAP2	MULTI-MSMS	OvCa99_classI_Rep5	1	582.8639526367188	2	582.864215	1163.71388	-0.9993	-0.00058245	0.4827	0.00028135	-0.5166	-0.00030111	582.8644652128918	37.66	0.59131	37.66	37.391	37.983	0					32	12	4	0	0	0	0.35444	1	2081	2081		56.721	12.344	1	506930			50709	4457	41953	41984	55011	55011					0.13856777796604547
RQKMPEDGL	9	Unmodified	_RQKMPEDGL_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-3|CALD1	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	537.27392578125	2	537.274041	1072.53353	0.37295	0.00020038	-0.96557	-0.00051878	-0.59262	-0.0003184	537.2735487681908	45.348	1.2573	45.348	45.068	46.326	0					74	28	4	0	0	0	0.10502	2	3142	3112;3142		95.815	27.028	1	16832000			50710	3559	41954	41985	55012;55013	55013					0.00016311077456521161
RQKQIAVAL	9	Unmodified	_RQKQIAVAL_					0	0	0			REV__ENSG00000169933|ENST00000675598|FRMPD4	REV__ENSG00000169933|ENST00000675598|FRMPD4	MULTI-MSMS	OvCa9_classI_Rep3	3	513.82470703125	2	513.824558	1025.63456	-0.26204	-0.00013464	-0.17441	-8.9616E-05	-0.43645	-0.00022426	513.824365829425	77.776	2.3029	75.424	74.89	77.193	-2.3527					143	45	6	0	0	0	0.21395	2	4107	4101;4107		73.975	19.198	1	842930	+		50711	21500	41955	41986	55014;55015	55015					0.12277130842448969
RQKQIAVAL	9	Unmodified	_RQKQIAVAL_					0	0	0			REV__ENSG00000169933|ENST00000675598|FRMPD4	REV__ENSG00000169933|ENST00000675598|FRMPD4	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.8271484375	2	513.824558	1025.63456	-0.13471	-6.9219E-05	-0.47194	-0.0002425	-0.60666	-0.00031171	513.8242062495449	78.535	2.5849	75.719	75.312	77.897	-2.8165					120	53	6	0	0	0	0.42057	3	6317	6317;6326;6351		50.025	10.772	1	1277200	+		50712	21500	41955	41986	55016;55017;55018	55016					0.12277130842448969
RQKQIAVAL	9	Unmodified	_RQKQIAVAL_					0	0	0			REV__ENSG00000169933|ENST00000675598|FRMPD4	REV__ENSG00000169933|ENST00000675598|FRMPD4	MULTI-MATCH	OvCa99_classI_Rep5	1		2	513.824558	1025.63456	2.4787	0.0012736	-4.6462	-0.0023873	-2.1675	-0.0011137	513.8222093019007	75.23	0.52049	75.23	74.962	75.482	0	-0.22446	-0.0043925	NaN	73.975	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138000	+		50713	21500	41955	41986							0.12277130842448969
RQKREEMRL	9	Unmodified	_RQKREEMRL_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	623.3455200195312	2	623.345863	1244.67717	-0.28463	-0.00017742	0.14637	9.1237E-05	-0.13826	-8.6183E-05	623.3459256285581	30.578	0.78762	30.578	30.383	31.171	0					36	15	4	0	0	0	0.18887	1	1183	1183		52.937	20.124	1	902620			50714	3559	41956	41987	55019	55019					0.06462157908413246
RQKVELASVRP	11	Unmodified	_RQKVELASVRP_					0	0	0			REV__ENSG00000189375|ENST00000405044|TBC1D28	REV__ENSG00000189375|ENST00000405044|TBC1D28	MULTI-MSMS	OvCa9_classI_Rep3	3	641.882568359375	2	641.883136	1281.75172	-5.3554	-0.0034376	4.4876	0.0028805	-0.86781	-0.00055703	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.71789	1	13093	13093		23.523	2.5758	1	804890	+		50715	22775	41957	41988	55020	55020					0.12211243991396259
RQKVELASVRP	11	Unmodified	_RQKVELASVRP_					0	0	0			REV__ENSG00000189375|ENST00000405044|TBC1D28	REV__ENSG00000189375|ENST00000405044|TBC1D28	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8824462890625	2	641.883136	1281.75172	-3.6311	-0.0023307	2.7968	0.0017952	-0.8343	-0.00053552	641.8847801872174	153.39	4.0845	151.94	150.68	154.77	-1.4516					420	106	6	0	0	0	0.69808	1	15315	15315		30.318	4.7437	1	809780	+		50716	22775	41957	41988	55021	55021					0.12211243991396259
RQLEAIVR	8	Unmodified	_RQLEAIVR_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	OvCa9_classI_Rep2	2	492.8003234863281	2	492.801083	983.587613	-0.13395	-6.6009E-05	-0.63002	-0.00031047	-0.76397	-0.00037648	492.80080175302294	60.14	2.6551	57.369	56.62	59.275	-2.7702					118	50	3	0	0	0	0.67745	1	4464	4464		47.916	0	1	2695700			50717	2042	41958	41989	55022	55022					0.09516271291306566
RQLEAIVRI	9	Unmodified	_RQLEAIVRI_					0	0	0		ENSG00000100297|ENST00000216122|MCM5;ENST00000493076.5_1_22:35806581-35817581:+|nuORF	ENSG00000100297|ENST00000216122|MCM5	ENSG00000100297|ENST00000216122|MCM5	MULTI-MSMS	OvCa99_classI_Rep5	1	549.3444213867188	2	549.343115	1096.67168	1.5461	0.00084934	0.23933	0.00013147	1.7854	0.00098081	549.343167959007	79.491	1.2416	79.491	79.202	80.443	0					69	30	5	0	0	0	0.0078313	2	8093	8093;8122		180.87	31.883	1	11389000			50718	2042	41959	41990	55023;55024	55023					0.1272080238820763
RQLEEQLRI	9	Unmodified	_RQLEEQLRI_					0	0	0		nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-4|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-2|TPM1;ENST00000560975.5_1_15:63335715-63353895:+|nuORF	nc|ENSG00000140416|P09493-8|TPM1	nc|ENSG00000140416|P09493-8|TPM1	MULTI-MSMS	OvCa99_classI_Rep5	1	592.8408813476562	2	592.840936	1183.66732	-0.9963	-0.00059065	0.70455	0.00041769	-0.29175	-0.00017296	592.8413448053459	69.94	0.8524	69.94	69.475	70.328	0					50	20	4	0	0	0	0.070405	1	6668	6668		107.01	16.638	1	3126900			50719	15054	41960	41991	55025	55025					0.08283293174645223
RQLESKVRLLE	11	Unmodified	_RQLESKVRLLE_					0	0	0		ENSG00000205476|ENST00000380243|CCDC85C	ENSG00000205476|ENST00000380243|CCDC85C	ENSG00000205476|ENST00000380243|CCDC85C	MULTI-MSMS	OvCa9_classI_Rep2	2	457.60833740234375	3	457.608659	1369.80415	-3.7463	-0.0017143	2.2282	0.0010197	-1.518	-0.00069467	457.60971240856696	157.06	2.9403	156.83	155.39	158.33	-0.22696					220	89	3	0	0	0	0.72511	1	15998	15998		14.086	1.2743	1	46638			50720	9073	41961	41992	55026	55026					0.1340378233435331
RQLESMIRL	9	Unmodified	_RQLESMIRL_					0	0	0		ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	ENSG00000076003|ENST00000264156|MCM6	MULTI-MSMS	OvCa99_classI_Rep5	1	573.3308715820312	2	573.326608	1144.63866	0.86458	0.00049569	0.81595	0.00046781	1.6805	0.00096349	573.3271113764094	83.355	0.55061	83.355	83.12	83.671	0					26	12	3	0	0	0	0.23241	1	8672	8672		70.816	7.2824	1	1499400			50721	1548	41962	41993	55027	55027					0.07212852273846693
RQLGPDGVL	9	Unmodified	_RQLGPDGVL_					0	0	0		ENST00000592982.2_1_19:33794203-33794776:+|nuORF	ENST00000592982.2_1_19:33794203-33794776:+|nuORF	ENST00000592982.2_1_19:33794203-33794776:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.7730407714844	2	477.771991	953.529429	-0.44147	-0.00021092	-0.51589	-0.00024648	-0.95736	-0.0004574	477.77173142761416	73.753	1.9165	70.357	70.027	71.944	-3.3961					89	39	3	0	0	0	0.35444	1	5731	5731		56.721	1.9447	1	2539800			50722	14148	41963	41994	55028	55028					0.05080589646047429
RQLGTVQQV	9	Unmodified	_RQLGTVQQV_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;COL6A3|p.T1393Cfs*9|1|0.09|ENSG00000163359|chr2:237371828-237371840|GCTCCCGGAAGGT/-|frameshift_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	514.7974243164062	2	514.795998	1027.57744	-0.75084	-0.00038653	0.78292	0.00040304	0.03208	1.6515E-05	514.7964280452716	53.631	1.4583	53.631	53.26	54.718	0					73	34	4	0	0	0	0.029147	2	4288	4264;4288		136.27	24.62	1	18695000			50723	6293	41964	41995	55029;55030	55030					0.06475663566084222
RQLGTVQQVI	10	Unmodified	_RQLGTVQQVI_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;COL6A3|p.T1393Cfs*9|1|0.09|ENSG00000163359|chr2:237371828-237371840|GCTCCCGGAAGGT/-|frameshift_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	571.3394775390625	2	571.33803	1140.66151	1.9053	0.0010886	-0.16472	-9.411E-05	1.7406	0.00099445	571.3379336706763	78.18	1.4109	78.18	77.544	78.955	0					90	33	5	0	0	0	0.38315	1	7918	7918		70.816	10.698	1	18361000			50724	6293	41965	41996	55031	55031					0.09680194662996655
RQLINALQI	9	Unmodified	_RQLINALQI_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	534.8305053710938	2	534.82984	1067.64513	0.83651	0.00044739	-0.48878	-0.00026142	0.34773	0.00018597	534.8296413644109	103.24	2.3818	103.24	102.98	105.36	0					213	55	5	0	0	0	0.10363	1	11542	11542		96.19	19.344	1	60018000			50725	6293	41966	41997	55032	55032					0.11401113496890503
RQLLRHHW	8	Unmodified	_RQLLRHHW_					0	0	0			REV__nc|ENSG00000186480|O15503-2|INSIG1	REV__nc|ENSG00000186480|O15503-2|INSIG1	MULTI-MSMS	OvCa9_classI_Rep4_	4	573.3235473632812	2	573.325591	1144.63663	-1.7625	-0.0010105	-1.1995	-0.00068772	-2.962	-0.0016982	573.3246679032849	146.58	1.5788	145.15	144.65	146.22	-1.4357					69	30	3	0	0	0	0.74971	1	14424	14424		26.796	2.2769	1	161770	+		50726	22591	41967	41998	55033	55033					0.0700960437093272
RQLMGECTF	9	Unmodified	_RQLMGECTF_					0	0	0			REV__ENSG00000152127|ENST00000281923|MGAT5	REV__ENSG00000152127|ENST00000281923|MGAT5	MULTI-MSMS	OvCa99_classI_Rep5	1	542.7518310546875	2	542.749344	1083.48414	-0.78694	-0.00042711	4.0321	0.0021884	3.2451	0.0017613	542.7513030560923	26.182	0.44973	26.182	25.992	26.442	0					22	8	4	0	0	0	0.55588	1	659	659		37.159	7.3176	1	211410	+		50727	20271	41968	41999	55034	55034					-0.054267202030132466
RQLMPKLYS	9	Unmodified	_RQLMPKLYS_					0	0	0			REV__nc|ENSG00000072803|Q9UKB1-2|FBXW11	REV__nc|ENSG00000072803|Q9UKB1-2|FBXW11	MULTI-MSMS	OvCa99_classI_Rep5	1	568.3194580078125	2	568.318251	1134.62195	-0.06193	-3.5196E-05	3.5585	0.0020223	3.4965	0.0019872	568.3201392238309	22.771	0.42472	22.771	22.617	23.042	0					29	9	4	0	0	0	0.5811	1	266	266		34.173	2.6427	1	496010	+		50728	16924	41969	42000	55035	55035					0.06002351387928684
RQLPRLRPAL	10	Unmodified	_RQLPRLRPAL_					0	0	0			REV__ENST00000447648.6_1_7:97846532-97846739:-|nuORF	REV__ENST00000447648.6_1_7:97846532-97846739:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	407.26336669921875	3	407.263046	1218.76731	1.8047	0.00073498	-1.5999	-0.00065158	0.20477	8.3394E-05	407.26226398347274	67.562	1.5001	64.675	64.341	65.841	-2.8873					59	29	3	0	0	0	0.762	1	2875	2875		23.523	0.94304	1	125720	+		50729	25919	41970	42001	55036	55036					0.16667575299129567
RQLQDPLVI	9	Unmodified	_RQLQDPLVI_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;TRIP12-MFI2|1|fusion	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MSMS	OvCa99_classI_Rep5	1	541.3236083984375	2	541.321848	1080.62914	2.6656	0.001443	-0.71692	-0.00038809	1.9487	0.0010549	541.3213453552481	96.397	1.2717	96.397	96.126	97.397	0					63	29	4	0	0	0	0.27001	2	10577	10548;10577		66.429	4.3219	1	7528600			50730	5697	41971	42002	55037;55038	55038					0.09205407259969434
RQLQLIKP	8	Unmodified	_RQLQLIKP_					0	0	0			REV__ENST00000480924.3_1_12:87563815-87564172:-|nuORF	REV__ENST00000480924.3_1_12:87563815-87564172:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	498.3230285644531	2	498.321651	994.62875	1.9778	0.00098557	0.016207	8.0764E-06	1.994	0.00099365	498.32152319037385	76.644	1.5982	76.644	76.158	77.757	0					118	38	6	0	0	0	0.42208	1	7690	7690		85.359	0	1	17267000	+		50731	26468	41972	42003	55039	55039					0.1312203233079572
RQLRATALG	9	Unmodified	_RQLRATALG_					0	0	0			REV__ENST00000578774.1_1_17:38517261-38520175:+|nuORF	REV__ENST00000578774.1_1_17:38517261-38520175:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	493.2982177734375	2	493.298707	984.582862	3.1299	0.001544	-3.147	-0.0015524	-0.017108	-8.4391E-06	493.29693905803276	26.988	0.77444	24.278	24.097	24.871	-2.7097					47	21	3	0	0	0	0.60342	1	417	417		31.53	4.7337	1	72756	+		50732	27806	41973	42004	55040	55040					0.08995387148547707
RQLSKYLR	8	Unmodified	_RQLSKYLR_					0	0	0		nc|ENSG00000102383|Q96MV8-2|ZDHHC15	nc|ENSG00000102383|Q96MV8-2|ZDHHC15	nc|ENSG00000102383|Q96MV8-2|ZDHHC15	MULTI-MSMS	OvCa99_classI_Rep5	1	532.3226928710938	2	532.322183	1062.62981	-0.27651	-0.00014719	-0.51225	-0.00027268	-0.78876	-0.00041987	532.3219154166727	44.728	1.585	44.728	44.484	46.069	0					88	35	5	0	0	0	0.73494	1	3028	3028		34.173	1.3601	1	12016000			50733	14934	41974	42005	55041	55041					0.10100246699676063
RQLSQVGPY	9	Unmodified	_RQLSQVGPY_					0	0	0		ENST00000399069.7_1_16:25123053-25123212:+|nuORF	ENST00000399069.7_1_16:25123053-25123212:+|nuORF	ENST00000399069.7_1_16:25123053-25123212:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	524.2820434570312	2	524.282723	1046.55089	-0.27292	-0.00014309	-2.3521	-0.0012332	-2.625	-0.0013763	524.2813718710015	21.322	0.20982	21.322	21.212	21.422	0					9	5	2	0	0	0	0.65476	1	110	110		25.45	1.2474	1	35194			50734	11379	41975	42006	55042	55042					0.02947974674748366
RQLSVPVI	8	Unmodified	_RQLSVPVI_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.287109375	2	456.287277	910.560001	-0.35023	-0.00015981	-0.36928	-0.0001685	-0.71951	-0.0003283	456.2868993148338	93.742	0.52585	91.235	90.913	91.439	-2.5072					18	11	2	0	0	0	0.745	1	8190	8190		29.15	1.2673	1	127620			50735	5793;36288	41976	42007	55043	55043					0.10114368031076992
RQLSVPVI	8	Unmodified	_RQLSVPVI_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	456.287277	910.560001	1.6922	0.00077215	-1.6078	-0.00073362	0.084444	3.8531E-05	456.2864076331454	92.376	0.52785	91.208	90.866	91.394	-1.168	-0.013243	-0.00026992	NaN	29.15	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105270			50736	5793;36288	41976	42007							0.10114368031076992
RQMEKDETV	9	Unmodified	_RQMEKDETV_					0	0	0		ENSG00000077549|ENST00000264202|CAPZB;nc|ENSG00000077549|P47756-1|CAPZB;ZCCHC17-CAPZB|1|fusion;ZCCHC17-CAPZB|2|fusion	ENSG00000077549|ENST00000264202|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	MULTI-MSMS	OvCa99_classI_Rep5	1	568.274169921875	2	568.274238	1134.53392	0.13265	7.538E-05	-0.90343	-0.00051339	-0.77078	-0.00043801	568.2736763913261	31.052	1.2751	31.052	30.532	31.807	0					51	25	4	0	0	0	0.14445	1	1241	1241		85.862	19.433	1	1872100			50737	1576	41977	42008	55044	55044					-0.027963139933717684
RQMSGAQI	8	Unmodified	_RQMSGAQI_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000183570|P57721-2|PCBP3;nc|ENSG00000183570|P57721-3|PCBP3;nc|ENSG00000183570|P57721-5|PCBP3;nc|ENSG00000183570|P57721-4|PCBP3;ENSG00000183570|ENST00000681687|PCBP3;nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF	ENSG00000169564|ENST00000303577|PCBP1;nc|ENSG00000197111|Q15366-7|PCBP2	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	445.73004150390625	2	445.729269	889.443985	0.5575	0.00024849	-0.24523	-0.00010931	0.31227	0.00013919	445.7289735679734	42.908	0.60332	42.908	42.624	43.227	0					28	13	3	0	0	0	0.64371	1	2798	2798		54.776	5.3348	1	573750			50738	7018;8677	41978	42009	55045	55045					-0.005158988112611951
RQNKLTYTM	9	Unmodified	_RQNKLTYTM_					0	0	0		ENST00000474025.1_1_1:31744094-31762265:-|nuORF;ENST00000489853.1_1_1:31732921-31754364:-|nuORF;ENSG00000060688|ENST00000263694|SNRNP40;nc|ENSG00000060688|Q96DI7-2|SNRNP40	ENST00000474025.1_1_1:31744094-31762265:-|nuORF	ENST00000474025.1_1_1:31744094-31762265:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	577.8051147460938	2	577.802965	1153.59138	-1.0667	-0.00061634	1.4483	0.0008368	0.38155	0.00022046	577.8037028740579	49.571	0.99562	49.571	49.206	50.201	0					48	22	4	0	0	0	0.083631	1	3707	3707		101.6	48.249	1	4456100			50739	1263	41979	42010	55046	55046					0.020725730028743783
RQNPTISL	8	Unmodified	_RQNPTISL_					0	0	0		nc|ENSG00000128536|Q6ZTQ4-2|CDHR3;ENSG00000128536|ENST00000317716|CDHR3	nc|ENSG00000128536|Q6ZTQ4-2|CDHR3	nc|ENSG00000128536|Q6ZTQ4-2|CDHR3	MULTI-MSMS	OvCa9_classI_Rep4_	4	464.7656555175781	2	464.764166	927.513779	-0.2743	-0.00012749	0.030107	1.3992E-05	-0.2442	-0.00011349	464.764080291045	68.862	1.0341	65.372	65.014	66.048	-3.4902					34	20	2	0	0	0	0.53531	1	5141	5141		73.975	8.1716	1	327360			50740	3885	41980	42011	55047	55047					0.04712303129008433
RQPAAPAGPL	10	Unmodified	_RQPAAPAGPL_					0	0	0			REV__ENST00000327876.4_1_2:47747956-47748880:-|nuORF	REV__ENST00000327876.4_1_2:47747956-47748880:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.28271484375	2	489.279983	976.545414	2.5921	0.0012683	1.5193	0.00074337	4.1114	0.0020116	489.2805736268781	130.23	1.0326	128.75	128.46	129.5	-1.478					38	20	3	0	0	0	0.61209	1	12523	12523		40.573	3.5441	1	73183	+		50741	24504	41981	42012	55048	55048					0.05620295882943083
RQPDSGISSI	10	Unmodified	_RQPDSGISSI_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OvCa99_classI_Rep5	1	530.2769165039062	2	530.275095	1058.53564	-0.49372	-0.00026181	-0.020358	-1.0795E-05	-0.51408	-0.0002726	530.2751024385426	61.348	1.3512	61.348	60.943	62.294	0					88	31	5	0	0	0	0.12738	2	5428	5398;5428		106.68	16.082	1	16265000			50742	6376	41982	42013	55049;55050	55050					0.008710630869245506
RQPELPEVI	9	Unmodified	_RQPELPEVI_					0	0	0		CTNND1|p.L417Sfs*11|1|0.14|ENSG00000198561|chr11:57802025-57802026|-/CAATGGCTTATTTGGAGAGCTCCACACAA|frameshift_variant;nc|ENSG00000198561|O60716-7|CTNND1;TMX2-CTNND1|11|fusion;nc|ENSG00000198561|O60716-3|CTNND1;nc|ENSG00000198561|O60716-6|CTNND1;TMX2-CTNND1|12|fusion;nc|ENSG00000198561|O60716-4|CTNND1;nc|ENSG00000198561|O60716-2|CTNND1;ENSG00000198561|ENST00000399050|CTNND1;RTN4RL2-CTNND1|8|fusion;RTN4RL2-CTNND1|9|fusion;RTN4RL2-CTNND1|10|fusion;RTN4RL2-CTNND1|3|fusion;RTN4RL2-CTNND1|6|fusion;nc|ENSG00000198561|O60716-5|CTNND1;RTN4RL2-CTNND1|4|fusion;RTN4RL2-CTNND1|7|fusion;RTN4RL2-CTNND1|1|fusion;RTN4RL2-CTNND1|2|fusion;TMX2-CTNND1|8|fusion;TMX2-CTNND1|9|fusion;TMX2-CTNND1|10|fusion;TMX2-CTNND1|6|fusion;TMX2-CTNND1|7|fusion;TMX2-CTNND1|3|fusion;TMX2-CTNND1|4|fusion;TMX2-CTNND1|5|fusion;TMX2-CTNND1|1|fusion;RTN4RL2-CTNND1|5|fusion;TMX2-CTNND1|15|fusion;nc|ENSG00000198561|O60716-20|CTNND1;nc|ENSG00000198561|O60716-15|CTNND1;nc|ENSG00000198561|O60716-24|CTNND1;nc|ENSG00000198561|O60716-23|CTNND1;nc|ENSG00000198561|O60716-21|CTNND1;nc|ENSG00000198561|O60716-19|CTNND1;nc|ENSG00000198561|O60716-9|CTNND1;nc|ENSG00000198561|O60716-22|CTNND1;nc|ENSG00000198561|O60716-16|CTNND1;nc|ENSG00000198561|O60716-18|CTNND1;CTNND1|p.K408Nfs*21|1|0.04|ENSG00000198561|chr11:57801999-57802000|-/TAGTGTGACAGACTCACCCTCTAGTGGTTGTT|frameshift_variant;nc|ENSG00000198561|O60716-17|CTNND1;nc|ENSG00000198561|O60716-10|CTNND1;nc|ENSG00000198561|O60716-13|CTNND1;TMX2-CTNND1|14|fusion;nc|ENSG00000198561|O60716-8|CTNND1;TMX2-CTNND1|2|fusion;TMX2-CTNND1|13|fusion;nc|ENSG00000198561|O60716-12|CTNND1;nc|ENSG00000198561|O60716-14|CTNND1;nc|ENSG00000198561|O60716-11|CTNND1;nc|ENSG00000198561|O60716-26|CTNND1;nc|ENSG00000198561|O60716-28|CTNND1;nc|ENSG00000198561|O60716-30|CTNND1;nc|ENSG00000198561|O60716-27|CTNND1;nc|ENSG00000198561|O60716-29|CTNND1;nc|ENSG00000198561|O60716-31|CTNND1;nc|ENSG00000198561|O60716-32|CTNND1;nc|ENSG00000198561|O60716-25|CTNND1	CTNND1|p.L417Sfs*11|1|0.14|ENSG00000198561|chr11:57802025-57802026|-/CAATGGCTTATTTGGAGAGCTCCACACAA|frameshift_variant	CTNND1|p.L417Sfs*11|1|0.14|ENSG00000198561|chr11:57802025-57802026|-/CAATGGCTTATTTGGAGAGCTCCACACAA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	540.8075561523438	2	540.806031	1079.59751	2.6322	0.0014235	0.0024311	1.3147E-06	2.6347	0.0014248	540.8058792140695	96.157	0.96836	96.157	95.826	96.795	0					56	22	4	0	0	0	0.34132	1	10525	10525		58.23	1.5089	1	2059000			50743	695	41983	42014	55051	55051					0.060894145060501614
RQPLLFLWPL	10	Unmodified	_RQPLLFLWPL_					0	0	0			REV__ENST00000268099.13_1_15:75137197-75137386:-|nuORF	REV__ENST00000268099.13_1_15:75137197-75137386:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	641.882080078125	2	641.887158	1281.75976	-4.605	-0.0029559	-3.0059	-0.0019295	-7.6109	-0.0048854	641.8852528126143	150.24	3.761	149.29	147.05	150.81	-0.95119					231	74	4	0	0	0	0.76627	1	12710	12710		23.042	3.0457	1	246170	+		50744	24053	41984	42015	55052	55052					0.13015422978855895
RQPPTVTKI	9	Unmodified	_RQPPTVTKI_					0	0	0		nc|ENSG00000158636|Q7Z589-6|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY	nc|ENSG00000158636|Q7Z589-6|EMSY	nc|ENSG00000158636|Q7Z589-6|EMSY	MULTI-MSMS	OvCa99_classI_Rep5	1	520.3173217773438	2	520.316566	1038.61858	-0.45063	-0.00023447	0.29981	0.000156	-0.15082	-7.8476E-05	520.3166224258811	46.653	0.83917	46.653	46.326	47.165	0					39	18	3	0	0	0	0.10502	1	3307	3307		95.815	13.575	1	1228600			50745	5966	41985	42016	55053	55053					0.10081424605550637
RQPRALVDEG	10	Unmodified	_RQPRALVDEG_					0	0	0			REV__nc|ENSG00000198890|Q96LA8-2|PRMT6	REV__nc|ENSG00000198890|Q96LA8-2|PRMT6	MULTI-MSMS	OvCa9_classI_Rep2	2	570.8084716796875	2	570.809636	1139.60472	0.40803	0.00023291	-0.52619	-0.00030035	-0.11816	-6.7449E-05	570.8091259353043	29.792	0.62796	27.082	26.88	27.508	-2.7097					23	12	3	0	0	0	0.72319	1	768	768		27.882	0	1	67359	+		50746	23087	41986	42017	55054	55054					0.04050147106477198
RQPSLFYHL	9	Unmodified	_RQPSLFYHL_					0	0	0		ENSG00000197442|ENST00000359015|MAP3K5;MAP3K15|p.E278Gfs*3|1|0.16|ENSG00000180815|chrX:19460040-19460040|T/-|frameshift_variant;ENSG00000180815|ENST00000338883|MAP3K15	ENSG00000197442|ENST00000359015|MAP3K5	ENSG00000197442|ENST00000359015|MAP3K5	MULTI-MSMS	OvCa99_classI_Rep5	1	580.8157958984375	2	580.81419	1159.61383	1.7337	0.001007	0.63571	0.00036923	2.3694	0.0013762	580.8144974558583	85.826	0.84534	85.826	85.544	86.389	0					49	20	4	0	0	0	0.35444	2	9044	9010;9044		56.721	7.0454	1	4641400			50747	8712	41987	42018	55055;55056	55056					0.040405404628018005
RQPYYATRV	9	Unmodified	_RQPYYATRV_					0	0	0		nc|ENSG00000111679|P29350-2|PTPN6;ENST00000416215.6_1_12:7061038-7070080:+|nuORF;ENSG00000111679|ENST00000318974|PTPN6;nc|ENSG00000111679|P29350-3|PTPN6;nc|ENSG00000111679|P29350-4|PTPN6	nc|ENSG00000111679|P29350-2|PTPN6	nc|ENSG00000111679|P29350-2|PTPN6	MULTI-MSMS	OvCa99_classI_Rep5	1	577.3092651367188	2	577.309272	1152.60399	-0.4779	-0.00027589	0.0091156	5.2625E-06	-0.46878	-0.00027063	577.3092381562805	47.315	0.9102	47.315	47.03	47.941	0					66	20	5	0	0	0	0.064985	2	3388	3388;3419		110.12	33.346	1	10304000			50748	2843	41988	42019	55057;55058	55057					0.03379352457386631
RQQAKMPLW	9	Unmodified	_RQQAKMPLW_					0	0	0			REV__nc|ENSG00000181090|Q9H9B1-2|EHMT1	REV__nc|ENSG00000181090|Q9H9B1-2|EHMT1	MULTI-MSMS	OvCa9_classI_Rep2	2	579.317138671875	2	579.316043	1156.61753	-1.8182	-0.0010533	3.8949	0.0022564	2.0767	0.0012031	579.3181889414963	38.501	0.98943	35.791	35.568	36.558	-2.7097					52	19	3	0	0	0	0.67509	1	1823	1823		23.042	2.0956	1	338070	+		50749	29036	41989	42020	55059	55059					0.04548886964994381
RQQGGQQLQV	10	Unmodified	_RQQGGQQLQV_					0	0	0		nc|ENSG00000188263|Q6ZVW7-2|IL17REL;ENSG00000188263|ENST00000695950|IL17REL	nc|ENSG00000188263|Q6ZVW7-2|IL17REL	nc|ENSG00000188263|Q6ZVW7-2|IL17REL	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.34326171875	2	571.307261	1140.59997	-0.48602	-0.00027767	4.4673	0.0025522	3.9812	0.0022745	571.3084419858915	35.916	0.36713	35.916	35.707	36.074	0					10	7	2	0	0	0	0.02658	1	1864	1864		64.207	5.4253	1	22981			50750	8460	41990	42021	55060	55060					0.035292629637069695
RQQGSGLRV	9	Unmodified	_RQQGSGLRV_					0	0	0		nc|ENSG00000100034|P49593-2|PPM1F;ENSG00000100034|ENST00000263212|PPM1F	nc|ENSG00000100034|P49593-2|PPM1F	nc|ENSG00000100034|P49593-2|PPM1F	MULTI-MSMS	OvCa99_classI_Rep5	1	500.7852478027344	2	500.785964	999.557376	-1.0874	-0.00054453	1.1215	0.00056163	0.034134	1.7094E-05	500.78639545086446	34.78	0.46583	34.78	34.586	35.052	0					22	9	4	0	0	0	0.22621	1	1703	1703		71.877	2.2498	1	664800			50751	1999	41991	42022	55061	55061					0.05757912626131656
RQQNVISP	8	Unmodified	_RQQNVISP_					0	0	0		chr12:49324037-49324212|411|25.67|0.81|4.99|+|0|TROAP,TROAP|1	chr12:49324037-49324212|411|25.67|0.81|4.99|+|0|TROAP,TROAP|1	chr12:49324037-49324212|411|25.67|0.81|4.99|+|0|TROAP,TROAP|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.2618408203125	2	471.261791	940.509028	-0.33325	-0.00015705	-0.25916	-0.00012213	-0.59241	-0.00027918	471.2615896536289	42.834	1.1541	39.827	39.539	40.693	-3.0074					55	21	3	0	0	0	0.64026	1	2031	2031		55.504	7.5886	1	1011100			50752	315	41992	42023	55062	55062					0.03639418986244891
RQQPKSLKV	9	Unmodified	_RQQPKSLKV_					0	0	0		ENSG00000149930|ENST00000308893|TAOK2;nc|ENSG00000149930|Q9UL54-3|TAOK2	ENSG00000149930|ENST00000308893|TAOK2	ENSG00000149930|ENST00000308893|TAOK2	MULTI-MSMS	OvCa99_classI_Rep5	1	542.335205078125	2	542.33529	1082.65603	0.048433	2.6267E-05	-0.3084	-0.00016726	-0.25997	-0.00014099	542.3350152533226	31.683	0.44667	31.683	31.509	31.956	0					20	8	3	0	0	0	0.5811	1	1326	1326		34.173	3.8548	1	207010			50753	5493	41993	42024	55063	55063					0.1180051587118669
RQQPLAAR	8	Unmodified	_RQQPLAAR_					0	0	0		ENST00000520220.6_2_8:56792441-56792612:+|nuORF	ENST00000520220.6_2_8:56792441-56792612:+|nuORF	ENST00000520220.6_2_8:56792441-56792612:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	470.2782897949219	2	470.277775	938.540997	-0.30429	-0.0001431	0.083658	3.9342E-05	-0.22063	-0.00010376	470.2777501387108	35.962	0.78468	35.962	35.566	36.351	0					26	16	2	0	0	0	0.67745	1	1856	1856		47.916	3.7988	1	967880			50754	13101	41994	42025	55064	55064					0.0692683146003219
RQQQSRLLL	9	Unmodified	_RQQQSRLLL_					0	0	0			REV__ENST00000323981.6_1_11:93469454-93470302:-|nuORF	REV__ENST00000323981.6_1_11:93469454-93470302:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	571.3438110351562	2	571.343646	1140.67274	-0.53031	-0.00030299	-0.50118	-0.00028635	-1.0315	-0.00058934	571.3434119951654	35.962	1.1333	35.962	35.707	36.84	0					71	24	5	0	0	0	0.28934	1	1841	1841		64.207	3.2353	1	11647000	+		50755	24468	41995	42026	55065	55065					0.10803016757131445
RQRFIGKP	8	Unmodified	_RQRFIGKP_					0	0	0		nc|ENSG00000143740|Q5SQN1-3|SNAP47;nc|ENSG00000143740|Q5SQN1-4|SNAP47;ENSG00000143740|ENST00000617596|SNAP47;nc|ENSG00000143740|Q5SQN1-2|SNAP47;nc|ENSG00000143740|Q5SQN1|SNAP47	nc|ENSG00000143740|Q5SQN1-3|SNAP47	nc|ENSG00000143740|Q5SQN1-3|SNAP47	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.3034973144531	2	501.303793	1000.59303	-1.4604	-0.00073208	0.70993	0.00035589	-0.75042	-0.00037619	501.3040153860226	45.537	1.2533	42.498	42.127	43.38	-3.0385					70	23	4	0	0	0	0.74971	1	2353	2353		26.796	0	1	431080			50756	5088	41996	42027	55066	55066					0.09275994873814852
RQRHATALE	9	Unmodified	_RQRHATALE_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10;nc|ENSG00000133026|P35580-3|MYH10;ENSG00000133026|ENST00000360416|MYH10	nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.296630859375	2	541.296696	1080.57884	-0.76185	-0.00041239	0.53739	0.00029089	-0.22445	-0.0001215	541.2968743073858	22.043	1.337	20.704	20.473	21.81	-1.3386					67	32	3	0	0	0	0.50149	1	235	235		42.396	5.237	1	333050			50757	15021	41997	42028	55067	55067					0.04177297654814538
RQRHRQLHRVW	11	Unmodified	_RQRHRQLHRVW_					0	0	0			REV__ENSG00000011451.21,WIZ,chr19,-,I7.1,15432762,15433164|90|6.04|4|intron	REV__ENSG00000011451.21,WIZ,chr19,-,I7.1,15432762,15433164|90|6.04|4|intron	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.2761840820312	3	524.634536	1570.88178	-1.4664	-0.0007693	-1.0015	-0.00052542	-2.4679	-0.0012947	524.9682242070509	41.937	0.46742	38.957	38.748	39.216	-2.9804					14	8	2	0	0	0	0.026534	1	1900	1900		6.001	0	1	33884	+		50758	16491	41998	42029	55068	55068					0.11917277833777007
RQRKLVSPPTG	11	Unmodified	_RQRKLVSPPTG_					0	0	0			REV__nc|ENSG00000101057|P10244-2|MYBL2	REV__nc|ENSG00000101057|P10244-2|MYBL2	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8685913085938	2	619.870028	1237.7255	-2.7857	-0.0017268	1.79	0.0011095	-0.99576	-0.00061724	619.8709153162803	147.4	3.9416	146.45	144.36	148.3	-0.9512					241	78	4	0	0	0	0.72473	1	12567	12567		19.104	0.84144	1	225770	+		50759	17469	41999	42030	55069	55069					0.11614974819917734
RQRKYKPN	8	Unmodified	_RQRKYKPN_					0	0	0			REV__tr|A0A553SIT4|A0A553SIT4_NIACICDP-glycerolglycerophosphotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15500PE=3SV=1	REV__tr|A0A553SIT4|A0A553SIT4_NIACICDP-glycerolglycerophosphotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15500PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3163452148438	2	545.317432	1088.62031	-1.7047	-0.0009296	0.076343	4.1631E-05	-1.6283	-0.00088797	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.74971	1	14435	14435		26.796	2.2769	1	202430	+		50760	29925	42000	42031	55070	55070					0.07954478414194455
RQRLIWLTWTL	11	Unmodified	_RQRLIWLTWTL_					0	0	0			REV__nc|ENSG00000174837|Q14246-4|ADGRE1	REV__nc|ENSG00000174837|Q14246-4|ADGRE1	MULTI-MSMS	OvCa9_classI_Rep2	2	495.9583435058594	3	495.961144	1484.8616	-4.8163	-0.0023887	-0.19968	-9.9032E-05	-5.016	-0.0024877	495.96094978154576	162.14	1.4092	161.91	160.94	162.35	-0.22696					77	27	3	0	0	0	0.72573	1	16491	16491		6.001	0.30226	1	83644	+		50761	21854	42001	42032	55071	55071					0.13856669330584737
RQRLIWLTWTL	11	Unmodified	_RQRLIWLTWTL_					0	0	0			REV__nc|ENSG00000174837|Q14246-4|ADGRE1	REV__nc|ENSG00000174837|Q14246-4|ADGRE1	MULTI-MSMS	OvCa9_classI_Rep2	2	495.9586486816406	3	495.961144	1484.8616	-4.8131	-0.0023871	3.3508	0.0016619	-1.4623	-0.00072524	495.96233137932313	162.83	0.28682	162.6	162.35	162.64	-0.22696					12	5	3	0	0	0	0.72573	1	16569	16569		6.001	0.58812	1	88076	+		50762	21854	42001	42032	55072	55072					0.13856669330584737
RQRLLLSD	8	Unmodified	_RQRLLLSD_					0	0	0			REV__ENST00000324677.11_1_17:28011643-28088245:-|nuORF	REV__ENST00000324677.11_1_17:28011643-28088245:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.7986145019531	2	500.79854	999.582528	-2.9685	-0.0014866	2.7229	0.0013636	-0.24564	-0.00012302	500.7998390995193	149.78	1.7039	148.35	147.52	149.23	-1.4344					90	34	4	0	0	0	0.74971	1	14790	14790		26.796	2.2921	1	346200	+		50763	24474	42002	42033	55073	55073					0.08271967428709104
RQRLQRSRLLR	11	Unmodified	_RQRLQRSRLLR_					0	0	0		ENST00000525451.6_2_11:65623690-65625691:-|nuORF	ENST00000525451.6_2_11:65623690-65625691:-|nuORF	ENST00000525451.6_2_11:65623690-65625691:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.266845703125	3	494.646442	1480.9175	-1.0238	-0.0005064	0.35935	0.00017775	-0.66442	-0.00032865	494.98095720005136	28.091	0.39915	28.091	27.941	28.34	0					11	7	2	0	0	0	0.026488	1	878	878		3.4087	0	1	45960			50764	13192	42003	42034	55074	55074					0.19627315290790648
RQRQSILPP	9	Unmodified	_RQRQSILPP_					0	0	0		ENST00000526909.5_1_11:710402-726978:+|nuORF;ENSG00000177106|ENST00000318562|EPS8L2;nc|ENSG00000177106|Q9H6S3-3|EPS8L2;ENST00000524474.5_1_11:720617-722550:+|nuORF	ENST00000526909.5_1_11:710402-726978:+|nuORF	ENST00000526909.5_1_11:710402-726978:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.8126831054688	2	547.825089	1093.63563	-0.37669	-0.00020636	0.58367	0.00031975	0.20698	0.00011339	547.8252612140489	23.22	0.6553	23.22	23.042	23.697	0					25	12	4	0	0	0	0.027462	1	337	337		35.618	12.096	1	473750			50765	7660	42004	42035	55075	55075					0.0925534521136342
RQRRFQKLFRW	11	Unmodified	_RQRRFQKLFRW_					0	0	0		ENST00000479859.1_1_2:24199858-24199963:+|nuORF;ENST00000446425.2_1_2:24199858-24205795:+|nuORF	ENST00000479859.1_1_2:24199858-24199963:+|nuORF	ENST00000479859.1_1_2:24199858-24199963:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	540.9854736328125	3	540.983054	1619.92733	2.6295	0.0014225	2.286	0.0012367	4.9156	0.0026592	540.9842345041635	25.895	1.1084	23.185	22.938	24.047	-2.7097					63	26	4	0	0	0	0.72582	1	315	315		3.026	0.17417	1	126350			50766	11993	42005	42036	55076	55076					0.14216503296142946
RQRRGPLP	8	Unmodified	_RQRRGPLP_					0	0	0			REV__ENST00000395379.5_1_8:133787694-133790038:+|nuORF	REV__ENST00000395379.5_1_8:133787694-133790038:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	490.29931640625	2	490.299042	978.583531	-0.93703	-0.00045943	0.74754	0.00036652	-0.1895	-9.2909E-05	490.2992510026684	34.054	0.98944	31.344	31.119	32.109	-2.7097					41	19	3	0	0	0	0.73288	1	1278	1278		35.201	0	1	105000	+		50767	25313	42006	42037	55077	55077					0.09338226588272391
RQRRKKTLFFL	11	Unmodified	_RQRRKKTLFFL_					0	0	0			REV__ENSG00000177575|ENST00000432237|CD163	REV__ENSG00000177575|ENST00000432237|CD163	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3091735839844	3	498.312288	1491.91504	-5.113	-0.0025478	0.297	0.000148	-4.816	-0.0023998	498.3123780141879	160.35	1.8473	160.12	159.68	161.53	-0.22697					120	37	4	0	0	0	0.72573	1	16390	16390		6.001	0.30226	1	150420	+		50768	22015	42007	42038	55078	55078					0.18875466833105747
RQRRKKTLFFL	11	Unmodified	_RQRRKKTLFFL_					0	0	0			REV__ENSG00000177575|ENST00000432237|CD163	REV__ENSG00000177575|ENST00000432237|CD163	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.30902099609375	3	498.312288	1491.91504	-6.6762	-0.0033268	2.0273	0.0010102	-4.6489	-0.0023166	498.3133001501435	161.41	1.8887	159.79	158.52	160.4	-1.6239					107	42	4	0	0	0	0.7257	1	16003	16003		6.3209	0.31984	1	100850	+		50769	22015	42007	42038	55079	55079					0.18875466833105747
RQRRQRQRQWQ	11	Unmodified	_RQRRQRQRQWQ_					0	0	0		ENST00000247706.3_1_19:17411946-17414055:-|nuORF	ENST00000247706.3_1_19:17411946-17414055:-|nuORF	ENST00000247706.3_1_19:17411946-17414055:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.6383666992188	3	542.636717	1624.88832	-0.10654	-5.7812E-05	0.96205	0.00052204	0.85551	0.00046423	542.6372513125856	37.976	3.034	35.084	34.343	37.377	-2.8925					200	60	5	0	0	0	0.7257	1	1467	1467		6.3209	0.31984	1	523720			50770	9782	42008	42039	55080	55080					0.1008717099448404
RQRRRARRLHA	11	Unmodified	_RQRRRARRLHA_					0	0	0		sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1;sp|F5HB41|US30_HCMVMUncharacterizedproteinUS30OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US30PE=4SV=1	sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1	sp|P09706|US30_HCMVAUncharacterizedproteinHHRF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US30PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	492.6341552734375	3	492.63828	1474.89301	-7.0687	-0.0034823	-0.83454	-0.00041113	-7.9032	-0.0038934	492.63775204394085	161.01	2.5056	159.66	158.64	161.14	-1.3571					138	50	3	0	0	0	0.72568	1	13968	13968		6.6596	0.33873	1	80334			50771	32852	42009	42040	55081	55081					0.17456099927926516
RQRRRKLKM	9	Unmodified	_RQRRRKLKM_					0	0	0			REV__ENSG00000170638|ENST00000380909|TRABD	REV__ENSG00000170638|ENST00000380909|TRABD	MULTI-MSMS	OvCa9_classI_Rep3	3	636.398193359375	2	636.401307	1270.78806	-6.5368	-0.00416	1.8698	0.0011899	-4.667	-0.0029701	636.4023674987772	159.22	1.0639	157.95	157.66	158.73	-1.267					49	20	4	0	0	0	0.55588	1	13765	13765		37.159	8.0096	1	88247	+		50772	21555	42010	42041	55082	55082					0.1634984240713493
RQRRRKLKM	9	Unmodified	_RQRRRKLKM_					0	0	0			REV__ENSG00000170638|ENST00000380909|TRABD	REV__ENSG00000170638|ENST00000380909|TRABD	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	636.401307	1270.78806	-6.5368	-0.00416	1.8698	0.0011899	-4.667	-0.0029701	636.4023674987772	159.22	1.0639	157.95	157.66	158.73	-1.267	-0.034504	0.00032881	NaN	37.159	49	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88247	+		50773	21555	42010	42041							0.1634984240713493
RQRRRLRRERV	11	Unmodified	_RQRRRLRRERV_					0	0	0		ENSG00000171119|ENST00000303212|NRTN	ENSG00000171119|ENST00000303212|NRTN	ENSG00000171119|ENST00000303212|NRTN	MULTI-MSMS	OvCa9_classI_Rep2	2	527.6605224609375	3	527.664607	1579.97199	-5.3143	-0.0028041	-1.9568	-0.0010326	-7.2711	-0.0038367	527.6634511079111	161.08	1.3896	160.85	160.33	161.72	-0.22697					71	27	3	0	0	0	0.72582	1	16425	16425		1.523	0	1	43512			50774	7174	42011	42042	55083	55083					0.2052032716217127
RQRSLIPVSR	10	Unmodified	_RQRSLIPVSR_					0	0	0			REV__ENSG00000112249|ENST00000369162|ASCC3	REV__ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3695678710938	2	606.370195	1210.72584	-2.0217	-0.0012259	1.0061	0.00061009	-1.0156	-0.00061581	606.3706888805716	149.57	2.6994	148.14	147.52	150.22	-1.4344					165	58	4	0	0	0	0.77039	1	14881	14881		22.58	0	1	304910	+		50775	18089	42012	42043	55084	55084					0.12890394539772387
RQRVKPDRK	9	Unmodified	_RQRVKPDRK_					0	0	0		ENSG00000168412|ENST00000307161|MTNR1A	ENSG00000168412|ENST00000307161|MTNR1A	ENSG00000168412|ENST00000307161|MTNR1A	MULTI-MSMS	OvCa9_classI_Rep3	3	591.8648681640625	2	591.862538	1181.71052	0.72409	0.00042856	2.9094	0.0017219	3.6334	0.0021505	591.8641978183085	65.182	2.2339	62.236	61.844	64.078	-2.9459					105	43	4	0	0	0	0.35444	1	2585	2585		56.721	3.3696	1	184170			50776	6906	42013	42044	55085	55085					0.1269352774259005
RQRVSSLLR	9	Unmodified	_RQRVSSLLR_					0	0	0		SVA_D_dup1417|chr21:8350923-8352925:-|16.64451059665088|0.0287746324772857|9.18|429.0|83|3|anti-sense;SVA_D_dup188|chr2:71160475-71162096:+|4.671785527912675|0.3567656144168134|3.71|429.0|60|2|anti-sense	SVA_D_dup1417|chr21:8350923-8352925:-|16.64451059665088|0.0287746324772857|9.18|429.0|83|3|anti-sense	SVA_D_dup1417|chr21:8350923-8352925:-|16.64451059665088|0.0287746324772857|9.18|429.0|83|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	557.8432006835938	2	557.843813	1113.67307	-0.23825	-0.0001329	0.11595	6.468E-05	-0.1223	-6.8225E-05	557.8437561188857	28.917	0.69841	28.917	28.688	29.387	0					33	13	4	0	0	0	0.37135	1	983	983		54.776	13.998	1	653640			50777	32931	42014	42045	55086	55086					0.12078436476986099
RQSCRMAR	8	Unmodified	_RQSCRMAR_					0	0	0		ENSG00000184828|ENST00000590800|ZBTB7C	ENSG00000184828|ENST00000590800|ZBTB7C	ENSG00000184828|ENST00000590800|ZBTB7C	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.2991027832031	2	504.25292	1006.49129	1.9877	0.0010023	-1.933	-0.00097472	0.054689	2.7577E-05	504.75376334440205	118.21	0.18636	118.21	118.11	118.3	0					5	3	2	0	0	0	0.028476	1	13557	13557		32.812	10.853	1	11299			50778	8193	42015	42046	55087	55087					-0.01169942811918645
RQSGNLLKSN	10	Unmodified	_RQSGNLLKSN_					0	0	0			REV__nc|ENSG00000117385|Q32P28-4|P3H1	REV__nc|ENSG00000117385|Q32P28-4|P3H1	MULTI-MSMS	OvCa99_classI_Rep5	1	558.8079223632812	2	558.809636	1115.60472	-0.12778	-7.1406E-05	0.35126	0.00019629	0.22348	0.00012488	558.8096032546082	25.019	0.30395	25.019	24.888	25.192	0					9	5	3	0	0	0	0.72142	1	530	530		28.081	0.19925	1	39196	+		50779	18347	42016	42047	55088	55088					0.05154147106486562
RQSISKALV	9	Unmodified	_RQSISKALV_					0	0	0		ENSG00000105193|ENST00000251453|RPS16;ENST00000339471.8_1_19:39923915-39924228:-|nuORF;RPS16|p.A94P|1|0.05|ENSG00000105193|chr19:39433537-39433537|C/G|missense_variant	ENSG00000105193|ENST00000251453|RPS16;RPS16|p.A94P|1|0.05|ENSG00000105193|chr19:39433537-39433537|C/G|missense_variant	ENSG00000105193|ENST00000251453|RPS16	MULTI-MSMS	OvCa99_classI_Rep5	1	501.310302734375	2	501.308741	1000.60293	-0.41817	-0.00020963	0.16934	8.4893E-05	-0.24883	-0.00012474	501.30870096295547	47.833	0.65286	47.833	47.595	48.248	0					42	14	4	0	0	0	0.21231	1	3464	3464		74.255	0.28031	1	2903100			50780	2427;32791	42017	42048	55089	55089					0.10265138088504955
RQSLGESPRTL	11	Unmodified	_RQSLGESPRTL_					0	0	0		nc|ENSG00000099204|O14639-4|ABLIM1;nc|ENSG00000099204|O14639-3|ABLIM1;nc|ENSG00000099204|O14639-5|ABLIM1;nc|ENSG00000099204|O14639-2|ABLIM1;nc|ENSG00000099204|O14639-6|ABLIM1;ENSG00000099204|ENST00000533213|ABLIM1	nc|ENSG00000099204|O14639-4|ABLIM1	nc|ENSG00000099204|O14639-4|ABLIM1	MULTI-MSMS	OvCa9_classI_Rep2	2	622.3353881835938	2	622.341301	1242.66805	-4.5737	-0.0028464	-3.0998	-0.0019292	-7.6736	-0.0047756	622.339183148381	154	0.88074	153.78	153.46	154.34	-0.22697					51	17	4	0	0	0	0.72491	1	15691	15691		16.717	0.71061	1	92153			50781	1960	42018	42049	55090	55090					0.05642087823707698
RQSLVLLI	8	Unmodified	_RQSLVLLI_					0	0	0			REV__chr1:154273598-154273783|141|12.86|0.62|4.37|+|0|HAX1,HAX1|1	REV__chr1:154273598-154273783|141|12.86|0.62|4.37|+|0|HAX1,HAX1|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.3103332519531	2	471.310752	940.606951	0.63501	0.00029929	-0.99591	-0.00046938	-0.36089	-0.00017009	471.31024904441927	22.362	2.2823	21.024	20.523	22.806	-1.3386					219	69	5	0	0	0	0.75661	1	393	393		19.36	0	1	1692100	+		50782	15802	42019	42050	55091	55091					0.13427227582246815
RQSPSPLRL	9	Unmodified	_RQSPSPLRL_					0	0	0		nc|ENSG00000120913|Q96JY6-4|PDLIM2;ENSG00000120913|ENST00000409417|PDLIM2;nc|ENSG00000120913|Q96JY6-3|PDLIM2;nc|ENSG00000120913|Q96JY6-5|PDLIM2;nc|ENSG00000120913|Q96JY6-2|PDLIM2	nc|ENSG00000120913|Q96JY6-4|PDLIM2	nc|ENSG00000120913|Q96JY6-4|PDLIM2	MULTI-MSMS	OvCa99_classI_Rep5	1	527.3124389648438	2	527.311815	1052.60908	-0.046952	-2.4758E-05	-0.55781	-0.00029414	-0.60476	-0.0003189	527.3114110187897	57.372	0.80565	57.372	57.093	57.899	0					46	18	4	0	0	0	0.14855	2	4830	4804;4830		85.161	8.4714	1	4607100			50783	3460	42020	42051	55092;55093	55093					0.08487656320039605
RQSPSPLRL	9	Unmodified	_RQSPSPLRL_					0	0	0		nc|ENSG00000120913|Q96JY6-4|PDLIM2;ENSG00000120913|ENST00000409417|PDLIM2;nc|ENSG00000120913|Q96JY6-3|PDLIM2;nc|ENSG00000120913|Q96JY6-5|PDLIM2;nc|ENSG00000120913|Q96JY6-2|PDLIM2	nc|ENSG00000120913|Q96JY6-4|PDLIM2	nc|ENSG00000120913|Q96JY6-4|PDLIM2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	527.311815	1052.60908	-0.88535	-0.00046686	-0.16777	-8.8466E-05	-1.0531	-0.00055532	527.3118047388203	60.16	2.1504	57.389	56.147	58.297	-2.7702	-0.028215	0.00031987	NaN	85.161	102	40	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139930			50784	3460	42020	42051							0.08487656320039605
RQSPSPLRL	9	Unmodified	_RQSPSPLRL_					0	0	0		nc|ENSG00000120913|Q96JY6-4|PDLIM2;ENSG00000120913|ENST00000409417|PDLIM2;nc|ENSG00000120913|Q96JY6-3|PDLIM2;nc|ENSG00000120913|Q96JY6-5|PDLIM2;nc|ENSG00000120913|Q96JY6-2|PDLIM2	nc|ENSG00000120913|Q96JY6-4|PDLIM2	nc|ENSG00000120913|Q96JY6-4|PDLIM2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	527.311815	1052.60908	-0.42514	-0.00022418	-0.62063	-0.00032726	-1.0458	-0.00055144	527.3115219238954	60.921	1.9106	57.491	56.407	58.318	-3.43	0.073573	-0.00015772	NaN	85.161	110	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244150			50785	3460	42020	42051							0.08487656320039605
RQSVPLDTCT	10	Unmodified	_RQSVPLDTCT_					0	0	0		ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	ENSG00000198286|ENST00000396946|CARD11	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.2764282226562	2	560.27678	1118.53901	-0.75477	-0.00042288	-1.9001	-0.0010646	-2.6549	-0.0014875	560.2756192604105	107.44	1.9511	105.56	105.22	107.17	-1.8785					106	38	4	0	0	0	0.66721	1	9882	9882		34.173	2.6427	1	1542600			50786	8804	42021	42052	55094	55094					-0.015520101307402001
RQTEKKRE	8	Unmodified	_RQTEKKRE_					0	0	0			REV__ENSG00000007080|ENST00000445755|CCDC124	REV__ENSG00000007080|ENST00000445755|CCDC124	MULTI-MSMS	OvCa9_classI_Rep3	3	537.8068237304688	2	537.804354	1073.59415	1.6	0.00086048	1.8064	0.00097149	3.4064	0.001832	537.8052358679963	69.946	1.7589	67.226	66.906	68.665	-2.7196					92	34	4	0	0	0	0.6962	1	3171	3171		44.117	0	1	888370	+		50787	16429	42022	42053	55095	55095					0.06030164452045028
RQTGKILKV	9	Unmodified	_RQTGKILKV_					0	0	0		nc|ENSG00000113643|P54136-2|RARS1;ENSG00000113643|ENST00000231572|RARS1	nc|ENSG00000113643|P54136-2|RARS1	nc|ENSG00000113643|P54136-2|RARS1	MULTI-MSMS	OvCa99_classI_Rep5	1	521.8395385742188	2	521.840208	1041.66586	-1.4529	-0.00075816	0.47366	0.00024718	-0.9792	-0.00051099	521.8404616573703	36.908	1.4062	36.908	36.662	38.069	0					81	30	5	0	0	0	0.064985	2	1996	1972;1996		110.12	27.879	1	7574700			50788	2985	42023	42054	55096;55097	55097					0.14669703876575113
RQTVKELII	9	Unmodified	_RQTVKELII_					0	0	0			REV__nc|ENSG00000115607|O95256-2|IL18RAP	REV__nc|ENSG00000115607|O95256-2|IL18RAP	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.3452758789062	2	550.345323	1098.67609	0.85243	0.00046913	-1.1693	-0.00064354	-0.3169	-0.00017441	550.3445389502896	36.811	1.2461	33.918	33.695	34.941	-2.8925					67	24	4	0	0	0	0.34132	2	1299	1299;1342		58.23	3.4536	1	399920	+		50789	18259	42024	42055	55098;55099	55098					0.1307026681113257
RQVAFDFTKV	10	Unmodified	_RQVAFDFTKV_					0	0	0		nc|ENSG00000073921|Q13492-3|PICALM;nc|ENSG00000073921|Q13492-2|PICALM;nc|ENSG00000073921|Q13492-5|PICALM;ENSG00000073921|ENST00000393346|PICALM;ENST00000531771.5_1_11:85718509-85733504:-|nuORF;nc|ENSG00000073921|Q13492-4|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	nc|ENSG00000073921|Q13492-3|PICALM	MULTI-MSMS	OvCa99_classI_Rep5	1	605.834716796875	2	605.83258	1209.65061	2.7526	0.0016676	-0.34696	-0.0002102	2.4056	0.0014574	605.8323150346708	86.715	0.70365	86.715	86.431	87.135	0					36	16	4	0	0	0	0.20536	1	9152	9152		93.598	18.554	1	2398600			50790	1504	42025	42056	55100	55100					0.05416792288679062
RQVASHVGL	9	Unmodified	_RQVASHVGL_					0	0	0		ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	ENSG00000110107|ENST00000227524|PRPF19	MULTI-MSMS	OvCa99_classI_Rep5	1	483.77801513671875	2	483.777608	965.540663	-0.24437	-0.00011822	-0.1448	-7.0052E-05	-0.38917	-0.00018827	483.7774886095976	42.905	0.98678	42.905	42.665	43.651	0					51	22	4	0	0	0	0.21231	1	2785	2785		74.255	0.28031	1	3515200			50791	2758	42026	42057	55101	55101					0.05651411740200274
RQVLFLRTQ	9	Unmodified	_RQVLFLRTQ_					0	0	0			REV__ENST00000452173.2_1_10:81444609-81444654:-|nuORF	REV__ENST00000452173.2_1_10:81444609-81444654:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.295166015625	2	580.848564	1159.68258	0.8937	0.0005191	-2.1482	-0.0012478	-1.2545	-0.00072865	580.8471341129194	146.4	0.541	146.4	146.13	146.67	0					17	10	2	0	0	0	0.027462	1	17108	17108		21.96	0	1	76221	+		50792	25978	42027	42058	55102	55102					0.10912204762507827
RQVLLGDQI	9	Unmodified	_RQVLLGDQI_					0	0	0		ENST00000575643.1_1_17:4701246-4701714:+|nuORF;ENSG00000142507|ENST00000270586|PSMB6	ENST00000575643.1_1_17:4701246-4701714:+|nuORF	ENST00000575643.1_1_17:4701246-4701714:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	521.3082885742188	2	521.306198	1040.59784	1.8328	0.00095544	-0.0043802	-2.2834E-06	1.8284	0.00095316	521.3061406572041	84.24	0.83574	84.24	83.965	84.8	0					54	19	4	0	0	0	0.046778	1	8779	8779		120.87	26.862	1	7879700			50793	4974	42028	42059	55103	55103					0.07916834225898128
RQVLTYLVA	9	Unmodified	_RQVLTYLVA_					0	0	0			REV__ENSG00000108846|ENST00000285238|ABCC3	REV__ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8175659179688	2	531.818941	1061.62333	0.089047	4.7357E-05	-3.7428	-0.0019905	-3.6538	-0.0019431	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.6653	1	13917	13917		24.203	0	1	263230	+		50794	17908	42029	42060	55104	55104					0.09498308748311501
RQVPLQRLRI	10	Unmodified	_RQVPLQRLRI_					0	0	0		nc|ENSG00000141736|P04626-6|ERBB2;nc|ENSG00000141736|P04626-5|ERBB2;nc|ENSG00000141736|P04626-4|ERBB2;ENSG00000141736|ENST00000269571|ERBB2;ERBB2|p.K336Sfs*18|1|0.05|ENSG00000141736|chr17:39712032-39712032|A/-|frameshift_variant;ENST00000584908.5_1_17:37856482-37868536:+|nuORF;ERBB2-MUC1|2|fusion;ERBB2-MUC1|1|fusion	nc|ENSG00000141736|P04626-6|ERBB2	nc|ENSG00000141736|P04626-6|ERBB2	MULTI-MSMS	OvCa9_classI_Rep3	3	426.9429626464844	3	426.942084	1277.80442	0.74077	0.00031627	-1.3177	-0.00056258	-0.57694	-0.00024632	426.94149785984115	79.39	2.4757	77.05	76.514	78.99	-2.3399					139	48	4	0	0	0	0.79186	1	4275	4275		20.03	2.1973	1	472050			50795	4936	42030	42061	55105	55105					0.17663246844881542
RQVQGSEI	8	Unmodified	_RQVQGSEI_					0	0	0		ENST00000526204.5_1_8:145650010-145650409:-|nuORF;ENST00000526977.5_1_8:145650235-145651211:-|nuORF;ENSG00000160948|ENST00000292510|VPS28;nc|ENSG00000160948|Q9UK41-2|VPS28;ENST00000528142.5_1_8:145649272-145651551:-|nuORF	ENST00000526204.5_1_8:145650010-145650409:-|nuORF	ENST00000526204.5_1_8:145650010-145650409:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	458.74688720703125	2	458.745973	915.477394	-0.48583	-0.00022287	0.56745	0.00026031	0.081619	3.7443E-05	458.7461475501632	38.046	0.85471	38.046	37.806	38.661	0					41	18	3	0	0	0	0.21559	1	2132	2132		122.18	39.871	1	755750			50796	6105	42031	42062	55106	55106					0.016274262322895083
RQVSLIAPP	9	Unmodified	_RQVSLIAPP_					0	0	0		ZFP64|p.T573Hfs*41|1|0.12|ENSG00000020256|chr20:52152476-52152477|-/A|frameshift_variant;nc|ENSG00000020256|Q9NTW7-6|ZFP64;nc|ENSG00000020256|Q9NTW7-4|ZFP64;ENSG00000020256|ENST00000216923|ZFP64	ZFP64|p.T573Hfs*41|1|0.12|ENSG00000020256|chr20:52152476-52152477|-/A|frameshift_variant	ZFP64|p.T573Hfs*41|1|0.12|ENSG00000020256|chr20:52152476-52152477|-/A|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	491.25335693359375	2	490.798009	979.581465	-1.3996	-0.00068691	1.245	0.00061104	-0.15458	-7.5867E-05	490.79849775311675	62.737	0.62905	59.992	59.744	60.374	-2.7444					19	11	2	0	0	0	0.027462	1	4753	4753		38.806	8.3025	1	20650			50797	1022	42032	42063	55107	55107					0.09085753059798662
RQVTGVTRV	9	Unmodified	_RQVTGVTRV_					0	0	0		nc|ENSG00000196531|E9PAV3-2|NACA;ENSG00000196531|ENST00000454682|NACA;nc|ENSG00000196531|Q13765|NACA	nc|ENSG00000196531|E9PAV3-2|NACA	nc|ENSG00000196531|E9PAV3-2|NACA	MULTI-MSMS	OvCa99_classI_Rep5	1	508.30377197265625	2	508.30399	1014.59343	-0.5572	-0.00028323	-1.2979	-0.00065975	-1.8551	-0.00094297	508.3034475130011	37.918	1.5288	37.918	37.668	39.196	0					107	33	5	0	0	0	0.094791	2	2099	2099;2146		98.582	12.717	1	42182000			50798	8621	42033	42064	55108;55109	55108					0.08671369803005291
RQVVLPKRL	9	Unmodified	_RQVVLPKRL_					0	0	0			REV__ENSG00000007545|ENST00000397412|CRAMP1	REV__ENSG00000007545|ENST00000397412|CRAMP1	MULTI-MSMS	OvCa9_classI_Rep2	2	554.8700561523438	2	554.8693	1107.72405	-1.9281	-0.0010698	1.7342	0.00096224	-0.19392	-0.0001076	554.8701070642081	36.184	1.0367	33.474	33.251	34.287	-2.7097					47	20	3	0	0	0	0.68424	1	1555	1555		21.96	1.013	1	161970	+		50799	16438	42034	42065	55110	55110					0.1744938552185431
RQWDYTEKL	9	Unmodified	_RQWDYTEKL_					0	0	0		MED12|p.K1768Qfs*3|1|0.17|ENSG00000184634|chrX:71136550-71136551|-/C|frameshift_variant;nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	MED12|p.K1768Qfs*3|1|0.17|ENSG00000184634|chrX:71136550-71136551|-/C|frameshift_variant	MED12|p.K1768Qfs*3|1|0.17|ENSG00000184634|chrX:71136550-71136551|-/C|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	619.8142700195312	2	619.811845	1237.60914	-0.91528	-0.0005673	1.1197	0.00069398	0.20438	0.00012668	619.812298205112	70.313	0.75371	70.313	70.046	70.8	0					48	18	4	0	0	0	0.044408	1	6730	6730		141.52	61.066	1	6347700			50800	8177	42035	42066	55111	55111					-0.0001638847061258275
RQWLAIQKL	9	Unmodified	_RQWLAIQKL_					0	0	0		ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	ENSG00000275700|ENST00000619387|AATF	MULTI-MSMS	OvCa99_classI_Rep5	1	578.3549194335938	2	578.353483	1154.69241	3.4508	0.0019958	-1.1551	-0.00066805	2.2958	0.0013278	578.3526744588883	88.319	0.79888	88.319	88.044	88.843	0					47	18	4	0	0	0	0.079296	1	9380	9380		102.77	8.7669	1	2441300			50801	9574	42036	42067	55112	55112					0.12125392767870835
RQWWWRRRKGE	11	Unmodified	_RQWWWRRRKGE_					0	0	0		ENST00000296754.7_2_5:96139638-96143632:-|nuORF	ENST00000296754.7_2_5:96139638-96143632:-|nuORF	ENST00000296754.7_2_5:96139638-96143632:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.7040100097656	4	411.724913	1642.87055	1.0448	0.00043016	3.775	0.0015543	4.8198	0.0019844	411.7265177967091	31.832	1.6268	31.832	31.509	33.136	0					91	32	7	0	0	0	0.026512	1	1422	1422		5.4129	5.0724	1	2708200			50802	10144	42037	42068	55113	55113					0.07482455739591387
RQYENFINR	9	Unmodified	_RQYENFINR_					0	0	0		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MSMS	OvCa9_classI_Rep4_	4	620.3161010742188	2	620.315086	1238.61562	0.23143	0.00014356	-0.53934	-0.00033456	-0.30791	-0.000191	620.3147040157951	60.456	1.6639	57.025	56.7	58.364	-3.43					72	33	4	0	0	0	0.040625	2	4096	4096;4108		126.24	43.492	1	527750			50803	3330	42038	42069	55114;55115	55114					0.00585549480751979
RQYENFINR	9	Unmodified	_RQYENFINR_					0	0	0		ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	ENSG00000118898|ENST00000345988|PPL	MULTI-MATCH	OvCa9_classI_Rep2	2		2	620.315086	1238.61562	-1.1014	-0.0006832	1.0179	0.00063141	-0.08348	-5.1784E-05	620.3157817803408	59.776	1.1975	57.006	56.462	57.659	-2.7702	-0.0098632	0.0011003	NaN	126.24	58	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135100			50804	3330	42038	42069							0.00585549480751979
RQYKDYKI	8	Unmodified	_RQYKDYKI_					0	0	0		nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;ENST00000525616.1_1_19:50180537-50188241:+|nuORF	nc|ENSG00000126457|Q99873-2|PRMT1	nc|ENSG00000126457|Q99873-2|PRMT1	MULTI-MSMS	OvCa99_classI_Rep5	1	557.3086547851562	2	557.306198	1112.59784	-0.13866	-7.7275E-05	0.043446	2.4213E-05	-0.095212	-5.3062E-05	557.3060910301361	38.64	0.80201	38.64	38.44	39.242	0					50	17	5	0	0	0	0.40148	1	2225	2225		87.754	23.547	1	2901900			50805	3781	42039	42070	55116	55116					0.04604834225892773
RQYLLKKK	8	Unmodified	_RQYLLKKK_					0	0	0		SBF2|p.L1514Ffs*17|1|0.21|ENSG00000133812|chr11:9795861-9795862|-/TTGGGGATGTTGCCTGGACCTTGGAA|frameshift_variant;ENSG00000133812|ENST00000256190|SBF2;ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2	SBF2|p.L1514Ffs*17|1|0.21|ENSG00000133812|chr11:9795861-9795862|-/TTGGGGATGTTGCCTGGACCTTGGAA|frameshift_variant	SBF2|p.L1514Ffs*17|1|0.21|ENSG00000133812|chr11:9795861-9795862|-/TTGGGGATGTTGCCTGGACCTTGGAA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.294921875	2	538.850576	1075.6866	2.7108	0.0014607	-1.53	-0.00082445	1.1808	0.00063626	538.849524062584	107.89	0.55285	107.89	107.65	108.2	0					16	12	2	0	0	0	0.028476	1	12202	12202		26.796	1.3459	1	324300			50806	4238	42040	42071	55117	55117					0.15178294256202207
RQYNIQKKEI	10	Unmodified	_RQYNIQKKEI_					0	0	0		ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	ENSG00000134371|ENST00000367435|CDC73	MULTI-MSMS	OvCa99_classI_Rep5	1	440.5856628417969	3	440.585854	1318.73573	0.78744	0.00034693	-1.429	-0.0006296	-0.64156	-0.00028266	440.5853648807093	38.813	0.8931	38.813	38.394	39.287	0					43	19	4	0	0	0	0.44671	1	2239	2239		61.765	8.1677	1	712090			50807	4291	42041	42072	55118	55118					0.089115377545113
RQYPWGVVQV	10	Unmodified	_RQYPWGVVQV_					0	0	0		nc|ENSG00000164402|Q92599-3|SEPTIN8;nc|ENSG00000164402|Q92599-2|SEPTIN8;nc|ENSG00000164402|Q92599-4|SEPTIN8;ENSG00000164402|ENST00000378719|SEPTIN8;ENST00000506047.1_1_4:77936059-77941836:+|nuORF;ENST00000483047.5_1_2:110321941-110325397:-|nuORF;ENST00000468616.5_1_2:110303765-110325397:-|nuORF;ENST00000517342.1_1_8:57389817-57390279:-|nuORF;ENSG00000138758|ENST00000264893|SEPTIN11;nc|ENSG00000138758|Q9NVA2-2|SEPTIN11;nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10	nc|ENSG00000164402|Q92599-3|SEPTIN8;ENSG00000138758|ENST00000264893|SEPTIN11;nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	ENSG00000138758|ENST00000264893|SEPTIN11	MULTI-MSMS	OvCa99_classI_Rep5	1	616.3345947265625	2	616.332747	1230.65094	1.8503	0.0011404	0.39541	0.0002437	2.2457	0.0013841	616.3328957865032	105.99	0.97028	105.99	105.75	106.72	0					74	21	5	0	0	0	0.084482	2	11926	11903;11926		118.74	56.979	1	11533000			50808	4722;6453;8344	42042	42073	55119;55120	55120					0.04484212008560462
RRAAALPN	8	Unmodified	_RRAAALPN_					0	0	0		ENST00000345392.2_1_3:10183791-10191525:+|nuORF	ENST00000345392.2_1_3:10183791-10191525:+|nuORF	ENST00000345392.2_1_3:10183791-10191525:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	434.7589416503906	2	434.759218	867.503883	-0.54476	-0.00023684	0.73073	0.00031769	0.18597	8.0851E-05	434.7594502813862	138.35	2.0585	138.12	137.54	139.6	-0.22697					104	41	4	0	0	0	0.69415	2	13814	13814;13832		44.531	11.015	1	279250			50809	10623	42043	42074	55121;55122	55121					0.06483159914273529
RRAAEAGLIV	10	Unmodified	_RRAAEAGLIV_					0	0	0			REV__nc|ENSG00000182557|Q6ZMD2-2|SPNS3	REV__nc|ENSG00000182557|Q6ZMD2-2|SPNS3	MULTI-MSMS	OvCa9_classI_Rep2	2	528.3184204101562	2	528.31964	1054.62473	0.73071	0.00038605	-0.90153	-0.0004763	-0.17082	-9.025E-05	528.3190295473344	29.614	0.47993	26.904	26.732	27.212	-2.7097					14	9	2	0	0	0	0.72319	1	735	735		27.882	6.9353	1	16792	+		50810	22302	42044	42075	55123	55123					0.09959942837076596
RRAAIAQAL	9	Unmodified	_RRAAIAQAL_					0	0	0		ENSG00000122692|ENST00000397149|SMU1;ENST00000379752.5_1_1:157029999-157030212:-|nuORF	ENSG00000122692|ENST00000397149|SMU1	ENSG00000122692|ENST00000397149|SMU1	MULTI-MSMS	OvCa99_classI_Rep5	1	485.30224609375	2	485.30125	968.587947	-0.39912	-0.00019369	0.036902	1.7909E-05	-0.36222	-0.00017578	485.30117285291504	47.875	0.77438	47.875	47.638	48.412	0					44	17	4	0	0	0	0.27546	1	3469	3469		65.803	12.452	1	2669600			50811	3549	42045	42076	55124	55124					0.10239691011167906
RRAAQVQRL	9	Unmodified	_RRAAQVQRL_					0	0	0		ENSG00000170955|ENST00000303927|CAVIN3	ENSG00000170955|ENST00000303927|CAVIN3	ENSG00000170955|ENST00000303927|CAVIN3	MULTI-MSMS	OvCa99_classI_Rep5	1	549.3353881835938	2	549.336156	1096.65776	-0.14808	-8.1344E-05	-0.94475	-0.00051898	-1.0928	-0.00060033	549.3357263411247	31.004	0.57961	31.004	30.781	31.361	0					28	11	3	0	0	0	0.27546	1	1234	1234		65.803	7.9919	1	11011000			50812	7157	42046	42077	55125	55125					0.1132956967978771
RRADRISKM	9	Unmodified	_RRADRISKM_					0	0	0		DOCK10|p.I1947Dfs*8|1|0.06|ENSG00000135905|chr2:224775073-224775080|CCTGGATG/-|frameshift_variant;nc|ENSG00000135905|Q96BY6-3|DOCK10;ENSG00000135905|ENST00000258390|DOCK10	DOCK10|p.I1947Dfs*8|1|0.06|ENSG00000135905|chr2:224775073-224775080|CCTGGATG/-|frameshift_variant	DOCK10|p.I1947Dfs*8|1|0.06|ENSG00000135905|chr2:224775073-224775080|CCTGGATG/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	566.8218994140625	2	566.822024	1131.62949	-0.75446	-0.00042764	0.5471	0.00031011	-0.20736	-0.00011754	566.8222463434663	27.866	0.54878	27.866	27.641	28.19	0					28	10	4	0	0	0	0.56889	1	859	859		35.618	2.8059	1	392950			50813	757	42047	42078	55126	55126					0.06894503708190314
RRAGGTGHRRG	11	Unmodified	_RRAGGTGHRRG_					0	0	0		ENST00000515320.5_1_5:118788206-118809606:+|nuORF;ENST00000442060.7_1_5:118788233-118809609:+|nuORF	ENST00000515320.5_1_5:118788206-118809606:+|nuORF	ENST00000515320.5_1_5:118788206-118809606:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	590.8309936523438	2	590.82956	1179.64457	0.72982	0.0004312	1.6234	0.00095916	2.3532	0.0013904	590.8303573746414	32.589	1.206	29.894	29.544	30.75	-2.6954					63	26	4	0	0	0	0.68757	1	806	806		33.922	6.8743	1	114090			50814	11937	42048	42079	55127	55127					0.06193131620398162
RRAGPEPI	8	Unmodified	_RRAGPEPI_					0	0	0			REV__nc|nan|Q8WVX3-2|C4orf3	REV__nc|nan|Q8WVX3-2|C4orf3	MULTI-MSMS	OvCa9_classI_Rep2	2	448.2591247558594	2	448.259051	894.503549	0.91253	0.00040905	-0.89413	-0.0004008	0.018403	8.2495E-06	448.25856617736815	142.24	1.5311	142.01	141.52	143.05	-0.22696					82	30	4	0	0	0	0.75915	1	14309	14309		20.482	0	1	131560	+		50815	29242	42049	42080	55128	55128					0.052077401944075064
RRAGPISVLS	10	Unmodified	_RRAGPISVLS_					0	0	0			REV__nc|ENSG00000160075|Q9NP77-2|SSU72	REV__nc|ENSG00000160075|Q9NP77-2|SSU72	MULTI-MSMS	OvCa9_classI_Rep2	2	528.3192138671875	2	528.31964	1054.62473	-1.2877	-0.00068031	1.0635	0.00056189	-0.22415	-0.00011842	528.3201028484496	56.253	2.2315	53.449	52.879	55.11	-2.804					126	44	4	0	0	0	0.75313	1	3963	3963		24.519	0.31644	1	541320	+		50816	28958	42050	42081	55129	55129					0.09959942837076596
RRAGVVPG	8	Unmodified	_RRAGVVPG_					0	0	0			REV__nc|ENSG00000085644|O14771-2|ZNF213	REV__nc|ENSG00000085644|O14771-2|ZNF213	MULTI-MSMS	OvCa9_classI_Rep3	3	406.2486267089844	2	406.248486	810.48242	-1.2292	-0.00049936	1.4085	0.00057221	0.17932	7.285E-05	406.24894809520566	140.8	1.576	139.77	139.38	140.96	-1.0339					88	31	4	0	0	0	0.75991	1	11670	11670		21.702	0	1	902300	+		50817	17137	42051	42082	55130	55130					0.06959774885558545
RRAKRRLRKQQ	11	Unmodified	_RRAKRRLRKQQ_					0	0	0			REV__nc|ENSG00000167470|Q504T8|MIDN	REV__nc|ENSG00000167470|Q504T8|MIDN	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.94317626953125	3	499.322069	1494.94438	0.090855	4.5366E-05	-2.8984	-0.0014472	-2.8076	-0.0014019	499.3208608782899	80.393	0.34873	78.698	78.568	78.917	-1.6951					10	6	2	0	0	0	0.026302	1	6777	6777		8.4073	5.3813	1	10329	+		50818	21278	42052	42083	55131	55131					0.21670423901946378
RRAKVELQ	8	Unmodified	_RRAKVELQ_					0	0	0			REV__ENSG00000023892|ENST00000316637|DEF6	REV__ENSG00000023892|ENST00000316637|DEF6	MULTI-MSMS	OvCa9_classI_Rep2	2	500.3060607910156	2	500.306532	998.598512	1.8295	0.00091529	-2.0216	-0.0010114	-0.1921	-9.611E-05	500.3053685545666	27.721	1.1711	25.012	24.828	25.999	-2.7097					57	25	3	0	0	0	0.75723	1	551	551		23.042	4.7181	1	318060	+		50819	16562	42053	42084	55132	55132					0.09915673665602753
RRALLIPLL	9	Unmodified	_RRALLIPLL_					0	0	0			REV__ENST00000342992.10_3_2:179441964-179442036:-|nuORF	REV__ENST00000342992.10_3_2:179441964-179442036:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.7623901367188	2	532.868769	1063.72298	0.18388	9.7983E-05	-0.88468	-0.00047142	-0.7008	-0.00037343	532.8682079711185	118.32	1.1887	117.29	116.74	117.93	-1.0324					32	23	2	0	0	0	0.027462	1	8958	8958		17.365	9.1337	1	14523	+		50820	24660	42054	42085	55133	55133					0.19367171152953233
RRANRILLV	9	Unmodified	_RRANRILLV_					0	0	0		VCL-ADK|2|fusion;VCL|p.R832Efs*23|1|0.05|ENSG00000035403|chr10:74107288-74107288|C/-|frameshift_variant;VCL-ADK|1|fusion;VCL-ADK|4|fusion;nc|ENSG00000035403|P18206-2|VCL;VCL-ADK|13|fusion;ENSG00000035403|ENST00000211998|VCL	VCL-ADK|2|fusion	VCL-ADK|2|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	555.8658447265625	2	555.864549	1109.71454	-0.27145	-0.00015089	-0.030116	-1.674E-05	-0.30157	-0.00016763	555.8644937340955	54.744	0.89226	54.744	54.422	55.315	0					54	20	4	0	0	0	0.53957	1	4428	4428		38.806	1.647	1	4294400			50821	1081	42055	42086	55134	55134					0.16407617236313854
RRAPDPLA	8	Unmodified	_RRAPDPLA_					0	0	0			REV__ENST00000424722.5_2_2:191874700-191878875:-|nuORF	REV__ENST00000424722.5_2_2:191874700-191878875:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	448.2587585449219	2	448.259051	894.503549	0.30648	0.00013738	-0.11996	-5.3774E-05	0.18652	8.3608E-05	448.2589237443711	143.15	0.90617	141.71	141.41	142.31	-1.4427					48	17	3	0	0	0	0.75915	1	14015	14015		20.482	0	1	179280	+		50822	24842	42056	42087	55135	55135					0.05207740194418875
RRAPPPSA	8	Unmodified	_RRAPPPSA_					0	0	0			REV__nc|ENSG00000106948|Q7Z591-8|AKNA	REV__nc|ENSG00000106948|Q7Z591-8|AKNA	MULTI-MSMS	OvCa9_classI_Rep3	3	426.24609375	2	426.245944	850.477334	-1.1759	-0.00050123	1.2849	0.00054769	0.10901	4.6463E-05	426.2464135300909	139.12	1.5749	138.06	137.54	139.11	-1.0595					80	31	4	0	0	0	0.75241	1	11456	11456		25.45	3.7478	1	422340	+		50823	17831	42057	42088	55136	55136					0.0461147102294035
RRAPPPSA	8	Unmodified	_RRAPPPSA_					0	0	0			REV__nc|ENSG00000106948|Q7Z591-8|AKNA	REV__nc|ENSG00000106948|Q7Z591-8|AKNA	MULTI-MSMS	OvCa9_classI_Rep4_	4	426.2471008300781	2	426.245944	850.477334	1.5061	0.00064196	-1.4207	-0.00060555	0.085419	3.641E-05	426.24523618232024	139.52	1.3271	138.02	137.63	138.95	-1.4952					53	25	3	0	0	0	0.7549	2	13621	13609;13621		24.203	1.0356	1	256270	+		50824	17831	42057	42088	55137;55138	55138					0.0461147102294035
RRAQGTLMI	9	Unmodified	_RRAQGTLMI_					0	0	0		SEMA3F-RBM6|1|fusion	SEMA3F-RBM6|1|fusion	SEMA3F-RBM6|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.3014526367188	2	523.300393	1044.58623	1.8914	0.00098979	3.9339	0.0020586	5.8253	0.0030484	523.302318918471	136.41	2.7906	134.87	133.96	136.75	-1.5437					120	58	3	0	0	0	0.65371	1	13255	13255		25.574	3.8717	1	37992			50825	32807	42058	42089	55139	55139					0.0657231393092843
RRARPRQFSRR	11	Unmodified	_RRARPRQFSRR_					0	0	0			REV__ENST00000342584.3_1_5:473081-473207:-|nuORF	REV__ENST00000342584.3_1_5:473081-473207:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	496.2930603027344	3	495.962653	1484.86613	-6.9468	-0.0034453	-0.98348	-0.00048777	-7.9302	-0.0039331	495.96210445138047	163.05	2.2058	161.66	160.17	162.38	-1.3926					163	48	5	0	0	0	0.71321	1	14277	14277		25.126	7.9592	1	227040	+		50826	24652	42059	42090	55140	55140					0.14308991316715947
RRARRIPKLVQ	11	Unmodified	_RRARRIPKLVQ_					0	0	0		ENST00000530559.5_1_11:8728764-8737359:-|nuORF;nc|ENSG00000166444|P78524-3|DENND2B;nc|ENSG00000166444|P78524-2|DENND2B;ENSG00000166444|ENST00000313726|DENND2B	ENST00000530559.5_1_11:8728764-8737359:-|nuORF	ENST00000530559.5_1_11:8728764-8737359:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.2679748535156	3	464.972266	1391.89497	1.1908	0.00055371	1.4592	0.0006785	2.6501	0.0012322	464.9729649963114	85.519	0.73208	82.873	82.511	83.243	-2.6463					28	14	3	0	0	0	0.02653	1	7215	7215		6.3209	0.6221	1	37240			50827	6681	42060	42091	55141	55141					0.21469715893158536
RRARRPRR	8	Unmodified	_RRARRPRR_					0	0	0		ENST00000530151.5_1_11:47586908-47587052:-|nuORF	ENST00000530151.5_1_11:47586908-47587052:-|nuORF	ENST00000530151.5_1_11:47586908-47587052:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	562.362060546875	2	562.360831	1122.70711	0.16592	9.3307E-05	1.761	0.0009903	1.9269	0.0010836	562.3617108986762	29.612	0.59992	29.612	29.436	30.036	0					27	11	4	0	0	0	0.67745	1	1067	1067		47.916	3.7988	1	727310			50828	13282	42061	42092	55142	55142					0.15066322479265182
RRATIFNFG	9	Unmodified	_RRATIFNFG_					0	0	0		nc|ENSG00000114268|Q16877-2|PFKFB4;ENSG00000114268|ENST00000232375|PFKFB4;nc|ENSG00000114268|Q16877-3|PFKFB4;ENST00000417753.5_1_3:48557182-48594149:-|nuORF	nc|ENSG00000114268|Q16877-2|PFKFB4	nc|ENSG00000114268|Q16877-2|PFKFB4	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.2959594726562	2	541.298707	1080.58286	-0.76184	-0.00041239	-3.1784	-0.0017205	-3.9403	-0.0021329	541.2968743073858	22.043	1.337	20.704	20.473	21.81	-1.3386					67	32	3	0	0	0	0.69895	1	321	321		18.324	0	1	333050			50829	14970	42062	42093	55143	55143					0.04579387148555725
RRATKQQFV	9	Unmodified	_RRATKQQFV_					0	0	0			REV__nc|ENSG00000153064|Q8NDB2-3|BANK1	REV__nc|ENSG00000153064|Q8NDB2-3|BANK1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3296508789062	2	567.330539	1132.64652	-3.474	-0.0019709	2.1482	0.0012187	-1.3258	-0.00075219	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.59259	1	12030	12030		32.812	1.2826	1	458690	+		50830	20318	42063	42094	55144	55144					0.08550747585650242
RRAVKRHRERR	11	Unmodified	_RRAVKRHRERR_					0	0	0		ENSG00000172209|ENST00000304402|GPR22	ENSG00000172209|ENST00000304402|GPR22	ENSG00000172209|ENST00000304402|GPR22	MULTI-MSMS	OvCa9_classI_Rep2	2	507.30963134765625	3	507.313685	1518.91923	-5.239	-0.0026578	-2.4753	-0.0012557	-7.7143	-0.0039136	507.3121827583452	162.21	1.6448	161.98	160.99	162.64	-0.22697					94	32	4	0	0	0	0.72552	1	16494	16494		8.7993	2.7983	1	66373			50831	7275	42064	42095	55145	55145					0.18052369099359566
RRAVKRHRERR	11	Unmodified	_RRAVKRHRERR_					0	0	0		ENSG00000172209|ENST00000304402|GPR22	ENSG00000172209|ENST00000304402|GPR22	ENSG00000172209|ENST00000304402|GPR22	MULTI-MSMS	OvCa9_classI_Rep3	3	507.3131408691406	3	507.313685	1518.91923	-7.2505	-0.0036783	0.10432	5.2923E-05	-7.1462	-0.0036254	507.31400483839707	163.92	1.3967	162.53	161.26	162.66	-1.3925					92	31	4	0	0	0	0.72573	1	14297	14297		6.001	1.1149	1	78750			50832	7275	42064	42095	55146	55146					0.18052369099359566
RRCCLLNGPN	10	Unmodified	_RRCCLLNGPN_					0	0	0			REV__ENST00000504223.1_1_4:8211385-8214524:+|nuORF	REV__ENST00000504223.1_1_4:8211385-8214524:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	573.7904052734375	2	573.28696	1144.55937	-0.32525	-0.00018646	0.50021	0.00028677	0.17496	0.0001003	573.2861870700847	30.25	1.9723	30.25	29.785	31.757	0					139	39	7	0	0	0	0.53885	1	1175	1175		49.442	0	1	13380000	+		50833	26856	42065	42096	55147	55147					-0.007131179519092257
RRCCLLNGPN	10	Unmodified	_RRCCLLNGPN_					0	0	0			REV__ENST00000504223.1_1_4:8211385-8214524:+|nuORF	REV__ENST00000504223.1_1_4:8211385-8214524:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	573.2861328125	2	573.28696	1144.55937	-2.583	-0.0014808	1.6386	0.0009394	-0.94443	-0.00054143	573.2878155681369	34.545	1.0883	31.835	31.612	32.701	-2.7097					58	21	5	0	0	0	0.3976	1	1337	1337		68.787	2.3575	1	313120	+		50834	26856	42065	42096	55148	55148					-0.007131179519092257
RRCQINIYD	9	Unmodified	_RRCQINIYD_					0	0	0		nc|ENSG00000187984|Q9H560|ANKRD19P;ENST00000473204.5_1_9:95571946-95584543:+|nuORF	nc|ENSG00000187984|Q9H560|ANKRD19P	nc|ENSG00000187984|Q9H560|ANKRD19P	MULTI-MSMS	OvCa99_classI_Rep5	1	590.7990112304688	2	590.798214	1179.58188	1.1888	0.00070233	1.4086	0.00083219	2.5974	0.0015345	590.7985778833332	138.52	3.6805	138.52	137.91	141.59	0					181	76	4	0	0	0	0.5811	1	16242	16242		34.173	1.3601	1	227430			50835	12406	42066	42097	55149	55149					-0.0007319528265270492
RRCREKPHWDL	11	Unmodified	_RRCREKPHWDL_					0	0	0		ENST00000379103.7_1_17:26205491-26205614:-|nuORF	ENST00000379103.7_1_17:26205491-26205614:-|nuORF	ENST00000379103.7_1_17:26205491-26205614:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.25970458984375	3	499.261488	1494.76263	0.11341	5.6622E-05	-4.0002	-0.0019971	-3.8868	-0.0019405	499.25858613424464	89.442	1.0889	86.862	86.457	87.546	-2.5797					52	21	4	0	0	0	0.72483	1	7677	7677		17.833	2.5	1	213350			50836	11120	42067	42098	55150	55150					0.03504323094034589
RRDALLKQ	8	Unmodified	_RRDALLKQ_					0	0	0		FAM186B|p.F448Sfs*18|1|0.27|ENSG00000135436|chr12:49600297-49600297|A/-|frameshift_variant;nc|ENSG00000135436|Q8IYM0-2|FAM186B;ENST00000533372.1_1_12:49976813-49999059:-|nuORF;ENSG00000135436|ENST00000257894|FAM186B	FAM186B|p.F448Sfs*18|1|0.27|ENSG00000135436|chr12:49600297-49600297|A/-|frameshift_variant	FAM186B|p.F448Sfs*18|1|0.27|ENSG00000135436|chr12:49600297-49600297|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	500.30645751953125	2	500.306532	998.598512	1.8295	0.00091529	-2.0216	-0.0010114	-0.1921	-9.611E-05	500.3053685545666	27.721	1.1711	25.012	24.828	25.999	-2.7097					57	25	3	0	0	0	0.6345	1	516	516		56.721	1.2168	1	318060			50837	4379	42068	42099	55151	55151					0.09915673665614122
RRDHTREW	8	Unmodified	_RRDHTREW_					0	0	0			REV__ENST00000440869.6_1_6:143999169-143999268:+|nuORF	REV__ENST00000440869.6_1_6:143999169-143999268:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	578.2853393554688	2	578.291945	1154.56934	NaN	NaN	NaN	NaN	NaN	NaN	NaN	156.16	1	154.67	154.17	155.17	-1.4911								0	0	0	0.30129	1	15453	15453		30.504	3.8107	1		+		50838	25836	42069	42100	55152	55152					-0.0017647063066306146
RRDNLLYFIRE	11	Unmodified	_RRDNLLYFIRE_					0	0	0		tr|A0A7D6VR52|A0A7D6VR52_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_17990PE=4SV=1	tr|A0A7D6VR52|A0A7D6VR52_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_17990PE=4SV=1	tr|A0A7D6VR52|A0A7D6VR52_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_17990PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.94317626953125	3	498.944042	1493.8103	0.10419	5.1986E-05	-1.7683	-0.00088228	-1.6641	-0.00083029	498.9431829113185	80.386	6.5904	78.69	78.321	84.911	-1.6951					347	130	6	0	0	0	0.70032	1	6845	6845		29.551	0.97402	1	5429500			50839	34895	42070	42101	55153	55153					0.08314300565871235
RRDQQQKP	8	Unmodified	_RRDQQQKP_					0	0	0		ENSG00000120063|ENST00000439174|GNA13;nc|ENSG00000120063|Q14344-2|GNA13	ENSG00000120063|ENST00000439174|GNA13	ENSG00000120063|ENST00000439174|GNA13	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.8202514648438	2	528.288871	1054.56319	1.9347	0.0010221	-1.3863	-0.00073237	0.54836	0.00028969	528.7897025020167	100.04	0.34142	100.04	99.896	100.24	0					12	7	3	0	0	0	0.028476	1	11060	11060		40.778	1.5253	1	79933			50840	3415	42071	42102	55154	55154					0.03809011137809648
RRDVQFSLP	9	Unmodified	_RRDVQFSLP_					0	0	0			REV__ENST00000255977.6_2_7:140153158-140153341:-|nuORF	REV__ENST00000255977.6_2_7:140153158-140153341:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.3104248046875	2	559.309272	1116.60399	-0.020511	-1.1472E-05	1.0176	0.00056915	0.99708	0.00055767	559.309552585914	71.572	1.9897	68.115	67.251	69.241	-3.4563					98	40	4	0	0	0	0.40463	1	5477	5477		51.528	7.1506	1	365140	+		50841	23887	42072	42103	55155	55155					0.050353524574120456
RRDVQFSLP	9	Unmodified	_RRDVQFSLP_					0	0	0			REV__ENST00000255977.6_2_7:140153158-140153341:-|nuORF	REV__ENST00000255977.6_2_7:140153158-140153341:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	559.309272	1116.60399	0.61256	0.00034261	0.99887	0.00055868	1.6114	0.00090129	559.3098104799544	70.402	2.0516	67.831	67.214	69.265	-2.5707	-0.065573	-0.00041803	NaN	51.528	88	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	194180	+		50842	23887	42072	42103							0.050353524574120456
RRDVQFSLP	9	Unmodified	_RRDVQFSLP_					0	0	0			REV__ENST00000255977.6_2_7:140153158-140153341:-|nuORF	REV__ENST00000255977.6_2_7:140153158-140153341:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	559.309272	1116.60399	0.096001	5.3694E-05	4.3183	0.0024153	4.4143	0.0024689	559.3110638095751	70.463	1.065	67.744	67.451	68.516	-2.7196	-0.15293	0.0032951	NaN	51.528	23	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11601	+		50843	23887	42072	42103							0.050353524574120456
RRDVQFSLP	9	Unmodified	_RRDVQFSLP_					0	0	0			REV__ENST00000255977.6_2_7:140153158-140153341:-|nuORF	REV__ENST00000255977.6_2_7:140153158-140153341:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	559.309272	1116.60399	-0.020511	-1.1472E-05	1.0176	0.00056915	0.99708	0.00055767	559.309552585914	71.572	1.9897	68.115	67.251	69.241	-3.4563	0.2185	-0.0003971	NaN	51.528	98	40	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	365140	+		50844	23887	42072	42103							0.050353524574120456
RRDYKVTVRA	10	Unmodified	_RRDYKVTVRA_					0	0	0			REV__nc|ENSG00000167641|Q96A00-2|PPP1R14A	REV__nc|ENSG00000167641|Q96A00-2|PPP1R14A	MULTI-MSMS	OvCa9_classI_Rep4_	4	632.3623046875	2	632.367653	1262.72075	-6.3099	-0.0039902	-3.4327	-0.0021707	-9.7427	-0.0061609	632.3652537766649	163.68	0.89803	162.05	161.68	162.57	-1.6336					70	24	4	0	0	0	0.75313	1	16158	16158		24.519	0.31644	1	384570	+		50845	21292	42073	42104	55156	55156					0.09990090677160879
RREELVLR	8	Unmodified	_RREELVLR_					0	0	0		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.7051391601562	2	535.825089	1069.63563	0.084637	4.5351E-05	-0.36912	-0.00019778	-0.28448	-0.00015243	535.824485059356	32.531	0.592	32.531	32.204	32.796	0					18	11	3	0	0	0	0.028476	1	1426	1426		82.241	0	1	112380			50846	6494	42074	42105	55157	55157					0.10359345211350046
RREKKNIH	8	Unmodified	_RREKKNIH_					0	0	0			REV__ENST00000487315.1_1_10:99213348-99216645:+|nuORF	REV__ENST00000487315.1_1_10:99213348-99216645:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	540.8226928710938	2	540.822881	1079.63121	0.019864	1.0743E-05	-0.45822	-0.00024782	-0.43836	-0.00023707	540.8226794689235	31.012	0.53033	31.012	30.781	31.311	0					20	10	4	0	0	0	0.73494	1	1244	1244		34.173	0.65696	1	223340	+		50847	21608	42075	42106	55158	55158					0.09457880788454531
RREPLKAS	8	Unmodified	_RREPLKAS_					0	0	0		ENSG00000112624|ENST00000314073|BICRAL	ENSG00000112624|ENST00000314073|BICRAL	ENSG00000112624|ENST00000314073|BICRAL	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.7851867675781	2	478.785433	955.556313	-1.2107	-0.00057965	1.0567	0.00050594	-0.15395	-7.3708E-05	478.7858288212029	146.58	1.5256	145.15	144.7	146.22	-1.4357					68	29	4	0	0	0	0.74229	1	14435	14435		30.504	2.6214	1	466310			50848	2915	42076	42107	55159	55159					0.07675698257230579
RRERAPAAGKR	11	Unmodified	_RRERAPAAGKR_					0	0	0			REV__ENSG00000118600|ENST00000261234|RXYLT1	REV__ENSG00000118600|ENST00000261234|RXYLT1	MULTI-MSMS	OvCa99_classI_Rep5	1	634.3773193359375	2	634.376343	1266.73813	0.70959	0.00045014	1.3047	0.00082769	2.0143	0.0012778	634.3769097150116	164.24	2.8363	164.24	163	165.84	0					295	106	3	0	0	0	0.71789	1	19139	19139		23.523	5.2606	1	532610	+		50849	18408	42077	42108	55160	55160					0.11543431002814941
RRERASGRRSR	11	Unmodified	_RRERASGRRSR_					0	0	0			REV__ENST00000489266.5_1_10:123734227-123734680:-|nuORF;REV__nc|ENSG00000107672|Q9NXX6-2|NSMCE4A	REV__nc|ENSG00000107672|Q9NXX6-2|NSMCE4A	MULTI-MSMS	OvCa9_classI_Rep2	2	462.9366149902344	3	462.934763	1385.78246	0.079191	3.666E-05	3.9218	0.0018156	4.001	0.0018522	462.9367014144655	44.408	4.3763	41.698	41.303	45.679	-2.7097					263	87	6	0	0	0	0.68299	1	2638	2638		35.496	6.9189	1	4456400	+		50850	26636;17853	42078	42109	55161	55161					0.1049983514901669
RRERHRKVARR	11	Unmodified	_RRERHRKVARR_					0	0	0			REV__ENSG00000172209|ENST00000304402|GPR22	REV__ENSG00000172209|ENST00000304402|GPR22	MULTI-MSMS	OvCa9_classI_Rep2	2	507.6458740234375	3	507.313685	1518.91923	-5.239	-0.0026578	-2.4753	-0.0012557	-7.7143	-0.0039136	507.3121827583452	162.21	1.6448	161.98	160.99	162.64	-0.22697					94	32	4	0	0	0	0.72552	1	16583	16583		8.7993	2.7983	1	66373	+		50851	21681	42079	42110	55162	55162					0.18052369099359566
RRERVLKLGE	10	Unmodified	_RRERVLKLGE_					0	0	0		ENSG00000145088|ENST00000273668|EAF2	ENSG00000145088|ENST00000273668|EAF2	ENSG00000145088|ENST00000273668|EAF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	628.383056640625	2	628.383303	1254.75205	-1.7019	-0.0010694	0.26231	0.00016483	-1.4396	-0.0009046	628.3832559511075	147.74	1.901	146.3	145.18	147.08	-1.435					72	37	2	0	0	0	0.74374	1	14621	14621		25.574	2.9944	1	277210			50852	5202	42080	42111	55163	55163					0.1348666371127365
RRERYLLLRWL	11	Unmodified	_RRERYLLLRWL_					0	0	0			REV__ENSG00000180998|ENST00000321662|GPR137C	REV__ENSG00000180998|ENST00000321662|GPR137C	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.7477416992188	3	525.319443	1572.9365	-1.234	-0.00064823	1.3744	0.000722	0.14044	7.3778E-05	525.6548575357593	46.31	0.9875	43.237	42.771	43.759	-3.0724					63	18	5	0	0	0	0.026497	1	2375	2375		9.6461	0	1	61765	+		50853	22211	42081	42112	55164	55164					0.17294851861834104
RRETKPGL	8	Unmodified	_RRETKPGL_					0	0	0		ENST00000515152.1_1_4:185570945-185573203:+|nuORF	ENST00000515152.1_1_4:185570945-185573203:+|nuORF	ENST00000515152.1_1_4:185570945-185573203:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	478.784912109375	2	478.785433	955.556313	-3.0173	-0.0014446	2.9044	0.0013906	-0.11287	-5.4041E-05	478.78669233564773	146.16	1.5937	145.21	144.8	146.39	-0.95947					82	31	4	0	0	0	0.73205	1	12289	12289		35.618	3.6634	1	384210			50854	13040	42082	42113	55165	55165					0.07675698257230579
RRFASRVKRQR	11	Unmodified	_RRFASRVKRQR_					0	0	0			REV__ENST00000382247.5_1_4:17812117-17812297:-|nuORF	REV__ENST00000382247.5_1_4:17812117-17812297:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.7808532714844	3	487.299153	1458.87563	-0.65681	-0.00032006	2.3511	0.0011457	1.6943	0.00082564	487.2998175735022	73.81	0.42989	70.414	70.22	70.65	-3.3961					11	8	2	0	0	0	0.026113	1	5751	5751		30.569	8.7884	1	15255	+		50855	25212	42083	42114	55166	55166					0.1645475960224303
RRFFFFLT	8	Unmodified	_RRFFFFLT_					0	0	0		ENST00000155926.8_1_2:12882275-12882671:+|nuORF	ENST00000155926.8_1_2:12882275-12882671:+|nuORF	ENST00000155926.8_1_2:12882275-12882671:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.299560546875	2	567.316369	1132.61818	2.5921	0.0014706	-2.4421	-0.0013854	0.15009	8.5146E-05	567.3145714591226	107.5	0.16434	107.5	107.44	107.6	0					6	3	2	0	0	0	0.028476	1	12137	12137		25.45	11.313	1	204110			50856	9634	42084	42115	55167	55167					0.057180496763749034
RRFFKAKKL	9	Unmodified	_RRFFKAKKL_					0	0	0		ENSG00000170348|ENST00000303575|TMED10;ENST00000556969.5_1_14:75601590-75614465:-|nuORF;ENST00000555873.1_1_14:75601590-75605782:-|nuORF	ENSG00000170348|ENST00000303575|TMED10	ENSG00000170348|ENST00000303575|TMED10	MULTI-MSMS	OvCa99_classI_Rep5	1	597.3848876953125	2	597.385117	1192.75568	-0.37063	-0.00022141	0.074358	4.442E-05	-0.29627	-0.00017699	597.3850690524613	33.705	0.91438	33.705	33.483	34.398	0					39	18	3	0	0	0	0.33652	1	1560	1560		58.782	14.405	1	791730			50857	7096	42085	42116	55168	55168					0.16701378275774914
RRFKARAN	8	Unmodified	_RRFKARAN_					0	0	0			REV__nc|ENSG00000143355|Q9NQ69-2|LHX9	REV__nc|ENSG00000143355|Q9NQ69-2|LHX9	MULTI-SECPEP	OvCa9_classI_Rep2	2	509.3254089355469	2	509.804491	1017.59443	0.64521	0.00032893	-2.5615	-0.0013059	-1.9163	-0.00097695	510.3043985100442	130.78	0.29892	130.55	130.4	130.7	-0.22696					7	5	2	0	0	0	0.028476	1	12864	12864		42.474	3.6683	1	5099.9	+		50858	17820	42086	42117	55169	55169					0.08633628962547846
RRFKARAN	8	Unmodified	_RRFKARAN_					0	0	0			REV__nc|ENSG00000143355|Q9NQ69-2|LHX9	REV__nc|ENSG00000143355|Q9NQ69-2|LHX9	MULTI-MATCH	OvCa9_classI_Rep3	3		2	509.804491	1017.59443	-0.063692	-3.247E-05	-1.4441	-0.00073621	-1.5078	-0.00076868	509.8039442183124	131.54	0.29749	130.42	130.29	130.59	-1.1249	-0.068555	0.00050725	NaN	42.474	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6142.5	+		50859	17820	42086	42117							0.08633628962547846
RRFKETGH	8	Unmodified	_RRFKETGH_					0	0	0		tr|A0A7D6ZGA3|A0A7D6ZGA3_9CLOTProline--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=proSPE=3SV=1	tr|A0A7D6ZGA3|A0A7D6ZGA3_9CLOTProline--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=proSPE=3SV=1	tr|A0A7D6ZGA3|A0A7D6ZGA3_9CLOTProline--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=proSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	515.7816772460938	2	515.780682	1029.54681	3.8164	0.0019684	-1.1183	-0.0005768	2.6981	0.0013916	515.7800627654972	25.113	0.82449	22.404	22.29	23.115	-2.7097					31	17	2	0	0	0	0.75208	1	221	221		17.365	0	1	167870			50860	35537	42087	42118	55170	55170					0.03321929971684767
RRFLSGISIR	10	Unmodified	_RRFLSGISIR_					0	0	0			REV__nc|ENSG00000034677|Q9NV58-2|RNF19A	REV__nc|ENSG00000034677|Q9NV58-2|RNF19A	MULTI-MSMS	OvCa99_classI_Rep5	1	402.2488098144531	3	402.247285	1203.72002	0.92603	0.00037249	-0.90218	-0.0003629	0.02385	9.5935E-06	402.246824989132	53.178	0.65209	53.178	52.956	53.609	0					41	14	4	0	0	0	0.65826	1	4216	4216		35.178	3.544	1	1474500	+		50861	16597	42088	42119	55171	55171					0.1263129602814388
RRFNYVVRL	9	Unmodified	_RRFNYVVRL_					0	0	0		ENSG00000156804|ENST00000517956|FBXO32;ENST00000287396.2_1_8:124515615-124544254:-|nuORF;ENST00000521719.5_1_8:124526414-124553254:-|nuORF	ENSG00000156804|ENST00000517956|FBXO32	ENSG00000156804|ENST00000517956|FBXO32	MULTI-MSMS	OvCa99_classI_Rep5	1	611.86328125	2	611.862006	1221.70946	0.10522	6.4382E-05	-0.33092	-0.00020248	-0.22569	-0.00013809	611.8616685468032	69.078	1.554	69.078	68.774	70.328	0					83	37	4	0	0	0	0.094616	2	6565	6541;6565		71.296	6.8947	1	7136500			50862	5858	42089	42120	55172;55173	55173					0.10747313373690304
RRFRFFQVRRW	11	Unmodified	_RRFRFFQVRRW_					0	0	0		chr6:31945037-31945178|97|24.64|0.48|5.69|+|1|None,C2|1	chr6:31945037-31945178|97|24.64|0.48|5.69|+|1|None,C2|1	chr6:31945037-31945178|97|24.64|0.48|5.69|+|1|None,C2|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.9808349609375	3	551.983165	1652.92767	-0.59601	-0.00032899	-3.346	-0.001847	-3.942	-0.0021759	551.9813504414648	40.156	2.3724	37.202	36.665	39.038	-2.9541					136	45	4	0	0	0	0.72582	3	1690	1690;1703;1727		3.6191	3.2477	1	382700			50863	513	42090	42121	55174;55175;55176	55174					0.12731923015985558
RRFRFFQVRRW	11	Unmodified	_RRFRFFQVRRW_					0	0	0		chr6:31945037-31945178|97|24.64|0.48|5.69|+|1|None,C2|1	chr6:31945037-31945178|97|24.64|0.48|5.69|+|1|None,C2|1	chr6:31945037-31945178|97|24.64|0.48|5.69|+|1|None,C2|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.8988342285156	4	414.239193	1652.92767	-0.31122	-0.00012892	-2.6079	-0.0010803	-2.9191	-0.0012092	414.23803000595206	40.271	2.2176	37.317	36.715	38.932	-2.9541					133	42	5	0	0	0	0.026559	1	1772	1772		1.523	1.523	1	162510			50864	513	42090	42121	55177	55177					0.12731923015985558
RRFRFFQVRRW	11	Unmodified	_RRFRFFQVRRW_					0	0	0		chr6:31945037-31945178|97|24.64|0.48|5.69|+|1|None,C2|1	chr6:31945037-31945178|97|24.64|0.48|5.69|+|1|None,C2|1	chr6:31945037-31945178|97|24.64|0.48|5.69|+|1|None,C2|1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	551.983165	1652.92767	0.21571	0.00011907	-3.8668	-0.0021344	-3.6511	-0.0020153	551.9809920293177	39.668	1.6832	36.958	36.459	38.142	-2.7097	-0.12209	-0.00054535	NaN	3.6191	85	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63141			50865	513	42090	42121							0.12731923015985558
RRFRRERRQRR	11	Unmodified	_RRFRRERRQRR_					0	0	0			REV__nc|ENSG00000204498|Q9UBC1-2|NFKBIL1	REV__nc|ENSG00000204498|Q9UBC1-2|NFKBIL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	419.198974609375	4	418.754536	1670.98904	-1.6625	-0.00069617	0.47439	0.00019865	-1.1881	-0.00049752	418.75480801080664	50.525	0.51951	47.373	47.121	47.641	-3.1525					12	9	2	0	0	0	0.02656	1	2901	2901		1.4188	0	1	14555	+		50866	23161	42091	42122	55178	55178					0.18038247767981375
RRFSPFSMSI	10	Unmodified	_RRFSPFSMSI_					0	0	0			REV__ENST00000344651.4_1_12:121154803-121157731:+|nuORF	REV__ENST00000344651.4_1_12:121154803-121157731:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	614.3233032226562	2	614.318783	1226.62301	-0.25482	-0.00015654	1.7428	0.0010706	1.488	0.00091408	614.3197008758727	66.473	0.45177	66.473	66.288	66.739	0					18	10	2	0	0	0	0.31125	1	6175	6175		67.494	21.521	1	1441900	+		50867	24681	42092	42123	55179	55179					0.0187656575683377
RRFSPFSMSI	10	Unmodified	_RRFSPFSMSI_					0	0	0			REV__ENST00000344651.4_1_12:121154803-121157731:+|nuORF	REV__ENST00000344651.4_1_12:121154803-121157731:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	614.318783	1226.62301	-0.25482	-0.00015654	1.7428	0.0010706	1.488	0.00091408	614.3197008758727	66.473	0.45177	66.473	66.288	66.739	0	0.076031	-0.00010977	NaN	67.494	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1441900	+		50868	24681	42092	42123							0.0187656575683377
RRFSPFSMSI	10	Unmodified	_RRFSPFSMSI_					0	0	0			REV__ENST00000344651.4_1_12:121154803-121157731:+|nuORF	REV__ENST00000344651.4_1_12:121154803-121157731:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	614.318783	1226.62301	-0.5327	-0.00032725	2.0615	0.0012664	1.5288	0.00093919	614.3197912172815	69.802	1.0245	66.321	65.811	66.836	-3.4812	-0.076031	0.00028184	NaN	67.494	30	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58728	+		50869	24681	42092	42123							0.0187656575683377
RRFWRNAWQLR	11	Unmodified	_RRFWRNAWQLR_					0	0	0		HERVH-int_dup395|chr1:229174781-229177850:+|1.6476935486843904|0.2234293350488721|2.88|410.0|149|3|anti-sense	HERVH-int_dup395|chr1:229174781-229177850:+|1.6476935486843904|0.2234293350488721|2.88|410.0|149|3|anti-sense	HERVH-int_dup395|chr1:229174781-229177850:+|1.6476935486843904|0.2234293350488721|2.88|410.0|149|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.793212890625	3	530.29552	1587.86473	0.013577	7.1998E-06	0.64007	0.00033943	0.65365	0.00034663	530.2963996881938	63.595	0.63653	63.595	63.257	63.894	0					22	15	2	0	0	0	0.026461	1	5737	5737		12.957	2.8536	1	876550			50870	14421	42093	42124	55180	55180					0.09431357227981607
RRFYQVLL	8	Unmodified	_RRFYQVLL_					0	0	0			REV__nc|ENSG00000157593|Q8TB61-3|SLC35B2	REV__nc|ENSG00000157593|Q8TB61-3|SLC35B2	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.8268432617188	2	547.827101	1093.63965	-4.8131	-0.0026367	3.5	0.0019174	-1.3131	-0.00071934	547.8288597088392	154.99	1.902	153.5	152.83	154.73	-1.4911					109	49	3	0	0	0	0.74361	1	15352	15352		29.842	7.8817	1	64964	+		50871	20524	42094	42125	55181	55181					0.09657434705104606
RRGAHTGG	8	Unmodified	_RRGAHTGG_					0	0	0		ENST00000595882.1_1_19:49692234-49693991:+|nuORF	ENST00000595882.1_1_19:49692234-49693991:+|nuORF	ENST00000595882.1_1_19:49692234-49693991:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	406.2207946777344	2	406.217717	810.420882	3.4392	0.0013971	-3.4867	-0.0014164	-0.047551	-1.9316E-05	406.21616055720585	137.36	0.90034	135.82	135.52	136.42	-1.5437					32	18	3	0	0	0	0.74595	1	13356	13356		14.664	1.7049	1	50356			50872	14180	42095	42126	55182	55182					0.008088431862915968
RRGAKTVRY	9	Unmodified	_RRGAKTVRY_					0	0	0		ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8304443359375	2	553.830706	1105.64686	-3.0789	-0.0017052	1.7991	0.0009964	-1.2798	-0.00070877	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.69123	1	11910	11910		20.947	0	1	308210			50873	8849	42096	42127	55183	55183					0.09826167305527633
RRGAREVVF	9	Unmodified	_RRGAREVVF_					0	0	0			REV__ENSG00000117394|ENST00000426263|SLC2A1	REV__ENSG00000117394|ENST00000426263|SLC2A1	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3150024414062	2	545.317432	1088.62031	-1.9768	-0.001078	0.49202	0.00026831	-1.4848	-0.00080969	545.3174971514211	139.12	3.9663	138.06	135.98	139.95	-1.0595					186	80	3	0	0	0	0.63422	1	11383	11383		27.882	2.4321	1	94142	+		50874	18348	42097	42128	55184	55184					0.07954478414194455
RRGCQHSYI	9	Unmodified	_RRGCQHSYI_					0	0	0			REV__nc|ENSG00000180881|Q9BXY5-3|CAPS2	REV__nc|ENSG00000180881|Q9BXY5-3|CAPS2	MULTI-MSMS	OvCa9_classI_Rep3	3	560.2764892578125	2	560.277449	1118.54035	0.059706	3.3452E-05	-4.2289	-0.0023694	-4.1692	-0.0023359	560.2749568783789	106.86	2.1744	105.6	105.27	107.44	-1.267					110	42	3	0	0	0	0.51865	1	7570	7570		40.778	3.6191	1	1807000	+		50875	22201	42098	42129	55185	55185					-0.014183312513296187
RRGDKLLKL	9	Unmodified	_RRGDKLLKL_					0	0	0			REV__ENST00000288986.6_2_3:136581145-136646878:+|nuORF	REV__ENST00000288986.6_2_3:136581145-136646878:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	549.85986328125	2	549.858932	1097.70331	-0.97884	-0.00053822	0.59131	0.00032514	-0.38753	-0.00021309	549.8591900772134	34.977	0.65769	34.977	34.772	35.429	0					33	13	4	0	0	0	0.55011	1	1722	1722		37.812	3.639	1	1490900	+		50876	24146	42099	42130	55186	55186					0.15836795142172377
RRGDRRRSN	9	Unmodified	_RRGDRRRSN_					0	0	0		ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	ENSG00000075539|ENST00000358350|FRYL	MULTI-MSMS	OvCa9_classI_Rep2	2	586.8235473632812	2	586.827018	1171.63948	-3.1356	-0.00184	-2.6636	-0.0015631	-5.7992	-0.0034031	586.8253279417393	148.8	1.3036	148.57	148.17	149.47	-0.22696					68	25	4	0	0	0	0.64427	1	15077	15077		26.693	3.1702	1	137330			50877	1535	42100	42131	55187	55187					0.060528277577986955
RRGEQIDNH	9	Unmodified	_RRGEQIDNH_					0	0	0			REV__ENST00000492556.5_1_22:51018168-51020414:-|nuORF	REV__ENST00000492556.5_1_22:51018168-51020414:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.8321533203125	2	562.78141	1123.54827	1.2821	0.00072156	0.27166	0.00015289	1.5538	0.00087445	562.7812241047299	66.919	0.63174	66.919	66.739	67.371	0					20	15	2	0	0	0	0.02709	1	6241	6241		93.143	15.826	1	279210	+		50878	26226	42101	42132	55188	55188					-0.00856480730203657
RRGGPGVL	8	Unmodified	_RRGGPGVL_					0	0	0		ENST00000374242.8_1_9:115478806-115480332:-|nuORF;ENST00000374234.1_1_9:115449830-115480332:-|nuORF	ENST00000374242.8_1_9:115478806-115480332:-|nuORF	ENST00000374242.8_1_9:115478806-115480332:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	406.2484436035156	2	406.248486	810.48242	-1.2292	-0.00049936	1.4085	0.00057221	0.17932	7.285E-05	406.24894809520566	140.8	1.576	139.77	139.38	140.96	-1.0339					88	31	4	0	0	0	0.75915	1	11634	11634		20.482	0	1	902300			50879	11030	42102	42133	55189	55189					0.06959774885569914
RRGGPGVL	8	Unmodified	_RRGGPGVL_					0	0	0		ENST00000374242.8_1_9:115478806-115480332:-|nuORF;ENST00000374234.1_1_9:115449830-115480332:-|nuORF	ENST00000374242.8_1_9:115478806-115480332:-|nuORF	ENST00000374242.8_1_9:115478806-115480332:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	406.2494201660156	2	406.248486	810.48242	1.9995	0.00081228	-1.9505	-0.00079239	0.048949	1.9885E-05	406.2475600842221	141.22	1.3094	139.76	139.45	140.76	-1.4627					69	24	4	0	0	0	0.74595	1	13787	13787		14.664	0.88877	1	437180			50880	11030	42102	42133	55190	55190					0.06959774885569914
RRGGRLRAVL	10	Unmodified	_RRGGRLRAVL_					0	0	0			REV__ENST00000342232.4_1_8:75233190-75233559:-|nuORF	REV__ENST00000342232.4_1_8:75233190-75233559:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	577.36669921875	2	577.373072	1152.73159	-7.5995	-0.0043877	-3.3246	-0.0019195	-10.924	-0.0063072	577.3709835310325	161.44	1.2472	160.07	159.69	160.93	-1.3692					76	25	4	0	0	0	0.7759	1	14033	14033		21.96	0.27414	1	379650	+		50881	24646	42103	42134	55191	55191					0.1613353784211995
RRGKELSLM	9	Unmodified	_RRGKELSLM_					0	0	0			REV__ENST00000370982.3_1_1:68170196-68170349:-|nuORF	REV__ENST00000370982.3_1_1:68170196-68170349:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.3121337890625	2	545.3135	1088.61245	0.53815	0.00029346	-3.9238	-0.0021397	-3.3857	-0.0018462	545.3112887104521	36.76	1.3955	33.868	33.395	34.791	-2.8925					73	27	5	0	0	0	0.28934	1	1285	1285		64.207	20.09	1	755870	+		50882	24972	42104	42135	55192	55192					0.07168583102384218
RRGKGKGG	8	Unmodified	_RRGKGKGG_					0	0	0			REV__ENST00000426538.6_1_16:58439143-58439287:+|nuORF	REV__ENST00000426538.6_1_16:58439143-58439287:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	408.25177001953125	2	408.25156	814.488568	1.8722	0.00076433	-2.5045	-0.0010225	-0.63226	-0.00025812	408.25050772083506	140.85	1.1401	139.39	138.94	140.08	-1.4627					36	21	3	0	0	0	0.72392	1	13759	13759		4.6817	0.69651	1	40242	+		50883	25666	42105	42136	55193	55193					0.07390293117089186
RRGKGKGG	8	Unmodified	_RRGKGKGG_					0	0	0			REV__ENST00000426538.6_1_16:58439143-58439287:+|nuORF	REV__ENST00000426538.6_1_16:58439143-58439287:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	408.25156	814.488568	-1.1498	-0.00046942	3.9947	0.0016308	2.8448	0.0011614	408.2522188939626	140.39	0.64053	139.36	138.99	139.63	-1.0339	-0.014547	0.0047465	NaN	4.6817	21	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10571	+		50884	25666	42105	42136							0.07390293117089186
RRGKGKGG	8	Unmodified	_RRGKGKGG_					0	0	0			REV__ENST00000426538.6_1_16:58439143-58439287:+|nuORF	REV__ENST00000426538.6_1_16:58439143-58439287:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	408.25156	814.488568	1.8722	0.00076433	-2.5045	-0.0010225	-0.63226	-0.00025812	408.25050772083506	140.85	1.1401	139.39	138.94	140.08	-1.4627	0.014547	-0.00056005	NaN	4.6817	36	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40242	+		50885	25666	42105	42136							0.07390293117089186
RRGKGRVP	8	Unmodified	_RRGKGRVP_					0	0	0		ENST00000395091.2_1_16:30569644-30569812:-|nuORF	ENST00000395091.2_1_16:30569644-30569812:-|nuORF	ENST00000395091.2_1_16:30569644-30569812:-|nuORF	MSMS	OvCa99_classI_Rep5	1	463.2922058105469	2	463.293759	924.572966	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.353	1	93.353	92.853	93.853	0								0	0	0	0.30129	1	10123	10123		25.45	0.94616	1				50886	11282	42106	42137	55194	55194					0.10766243933846908
RRGLAPRGRS	10	Unmodified	_RRGLAPRGRS_					0	0	0		ENSG00000282881|ENST00000697682|TMEM275	ENSG00000282881|ENST00000697682|TMEM275	ENSG00000282881|ENST00000697682|TMEM275	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.7930297851562	2	563.33923	1124.66391	2.6127	0.0014719	0.60069	0.00033839	3.2134	0.0018103	563.3394828640464	137.09	0.62523	137.09	136.82	137.45	0					20	12	2	0	0	0	0.026931	1	16015	16015		30.318	0	1	54283			50887	9608	42107	42138	55195	55195					0.10656087911320355
RRGLNPGPKK	10	Unmodified	_RRGLNPGPKK_					0	0	0			REV__ENSG00000169188|ENST00000374987|APEX2	REV__ENSG00000169188|ENST00000374987|APEX2	MULTI-MSMS	OvCa9_classI_Rep2	2	561.8458862304688	2	561.846356	1121.67816	-3.2197	-0.001809	1.8948	0.0010646	-1.3249	-0.00074438	561.8472802195274	152.47	1.17	152.24	151.83	153	-0.22697					70	23	4	0	0	0	0.7759	1	15554	15554		21.96	3.6355	1	142980	+		50888	21441	42108	42139	55196	55196					0.12218740339585565
RRGLPGGSL	9	Unmodified	_RRGLPGGSL_					0	0	0			REV__ENSG00000179292|ENST00000327259|TMEM151A	REV__ENSG00000179292|ENST00000327259|TMEM151A	MULTI-MSMS	OvCa9_classI_Rep3	3	456.7727966308594	2	456.772326	911.530098	-2.6183	-0.001196	2.5573	0.0011681	-0.061068	-2.7894E-05	456.77340273142477	142.71	1.7302	141.7	141.28	143.01	-1.0106					71	34	3	0	0	0	0.59983	1	11827	11827		31.955	5.1588	1	453300	+		50889	22116	42109	42140	55197	55197					0.07079429085752054
RRGLPGGSL	9	Unmodified	_RRGLPGGSL_					0	0	0			REV__ENSG00000179292|ENST00000327259|TMEM151A	REV__ENSG00000179292|ENST00000327259|TMEM151A	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.7726135253906	2	456.772326	911.530098	0.021393	9.7715E-06	-0.016883	-7.7118E-06	0.0045094	2.0598E-06	456.772221860438	143.17	2.3082	141.72	140.94	143.25	-1.4427					127	44	4	0	0	0	0.6653	1	14033	14033		24.203	1.1603	1	669650	+		50890	22116	42109	42140	55198	55198					0.07079429085752054
RRGLPGTRPP	10	Unmodified	_RRGLPGTRPP_					0	0	0			REV__ENST00000507939.5_3_5:137878542-137878810:-|nuORF	REV__ENST00000507939.5_3_5:137878542-137878810:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8316040039062	2	553.830706	1105.64686	1.4061	0.00077877	-2.5843	-0.0014313	-1.1781	-0.00065248	553.8291816775361	139.45	3.0735	137.95	136.76	139.84	-1.4952					150	61	3	0	0	0	0.79213	1	13616	13616		19.997	0.6368	1	110800	+		50891	26908	42110	42141	55199	55199					0.09826167305504896
RRGLRVSMA	9	Unmodified	_RRGLRVSMA_					0	0	0		ENST00000488315.5_1_7:149570336-149570612:-|nuORF	ENST00000488315.5_1_7:149570336-149570612:-|nuORF	ENST00000488315.5_1_7:149570336-149570612:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3026733398438	2	523.30601	1044.59747	-2.1227	-0.0011108	-2.4633	-0.0012891	-4.5861	-0.0023999	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.68424	1	11396	11396		21.96	1.013	1	183010			50892	12665	42111	42142	55200	55200					0.0769513602506322
RRGMFPDNFV	10	Unmodified	_RRGMFPDNFV_					0	0	0		ENSG00000198087|ENST00000359314|CD2AP	ENSG00000198087|ENST00000359314|CD2AP	ENSG00000198087|ENST00000359314|CD2AP	MULTI-SECPEP	OvCa9_classI_Rep2	2	619.8689575195312	2	619.808582	1237.60261	-4.2669	-0.0026447	0.31172	0.0001932	-3.9552	-0.0024515	619.8086598429907	152.75	0.59537	152.52	152.28	152.88	-0.22696					15	11	2	0	0	0	0.027221	1	15531	15531		19.104	2.6304	1	24376			50893	8782	42112	42143	55201	55201					-0.006686049030122376
RRGPKSDAEL	10	Unmodified	_RRGPKSDAEL_					0	0	0			REV__nc|ENSG00000164818|Q86Y56-2|DNAAF5	REV__nc|ENSG00000164818|Q86Y56-2|DNAAF5	MULTI-MSMS	OvCa9_classI_Rep2	2	564.8106689453125	2	564.809636	1127.60472	-2.1858	-0.0012346	3.688	0.002083	1.5023	0.00084849	564.8115908604212	146.02	1.2908	145.8	145.33	146.62	-0.22697					59	25	3	0	0	0	0.72319	1	14718	14718		27.882	1.1893	1	117310	+		50894	21022	42113	42144	55202	55202					0.04602147106470511
RRGPRRLV	8	Unmodified	_RRGPRRLV_					0	0	0		ENSG00000170128|ENST00000304244|GPR25	ENSG00000170128|ENST00000304244|GPR25	ENSG00000170128|ENST00000304244|GPR25	MULTI-MSMS	OvCa9_classI_Rep3	3	505.3290100097656	2	505.328134	1008.64171	-0.23762	-0.00012008	2.226	0.0011249	1.9884	0.0010048	505.3291917043536	71.901	1.8283	69.298	68.932	70.76	-2.6023					107	36	4	0	0	0	0.61758	2	3391	3391;3397		60.294	7.057	1	992780			50895	7075	42114	42145	55203;55204	55203					0.13773908233542898
RRGQPTEVKVL	11	Unmodified	_RRGQPTEVKVL_					0	0	0			REV__ENST00000552176.2_17:6916465-6916567:+|nuORF	REV__ENST00000552176.2_17:6916465-6916567:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8822021484375	2	641.883136	1281.75172	-5.3554	-0.0034376	4.4876	0.0028805	-0.86781	-0.00055703	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.61983	1	13032	13032		42.864	2.0861	1	804890	+		50896	27494	42115	42146	55205	55205					0.12211243991396259
RRGRIRYGP	9	Unmodified	_RRGRIRYGP_					0	0	0		FAM47B|p.Q542R|1|0.08|ENSG00000189132|chrX:34944456-34944456|A/G|missense_variant	FAM47B|p.Q542R|1|0.08|ENSG00000189132|chrX:34944456-34944456|A/G|missense_variant	FAM47B|p.Q542R|1|0.08|ENSG00000189132|chrX:34944456-34944456|A/G|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	565.8350830078125	2	565.836323	1129.65809	0.32553	0.0001842	-3.2781	-0.0018549	-2.9526	-0.0016707	565.8347307645225	31.149	1.6226	31.149	30.93	32.553	0					113	32	6	0	0	0	0.36502	1	1270	1270		55.504	2.5675	1	29421000			50897	14322	42116	42147	55206	55206					0.09844989399630322
RRGRPAGL	8	Unmodified	_RRGRPAGL_					0	0	0		ENST00000557285.1_1_20:25057179-25058535:-|nuORF	ENST00000557285.1_1_20:25057179-25058535:-|nuORF	ENST00000557285.1_1_20:25057179-25058535:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	441.7688293457031	2	441.77266	881.530767	-6.7094	-0.002964	-2.005	-0.00088575	-8.7144	-0.0038498	441.7715947543114	164.09	0.2141	162.46	162.36	162.57	-1.6336					10	4	3	0	0	0	0.74394	1	16214	16214		13.775	1.5685	1	435020			50898	13683	42117	42148	55207	55207					0.08526268525463365
RRGRPTPF	8	Unmodified	_RRGRPTPF_					0	0	0		ENST00000581737.1_1_17:80202659-80207035:-|nuORF;ENST00000578501.5_1_17:80203885-80207170:-|nuORF	ENST00000581737.1_1_17:80202659-80207035:-|nuORF	ENST00000581737.1_1_17:80202659-80207035:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.7882080078125	2	493.785767	985.556982	-0.08827	-4.3586E-05	-0.24141	-0.0001192	-0.32968	-0.00016279	493.7853918008515	32.641	0.39303	32.641	32.403	32.796	0					13	7	2	0	0	0	0.028476	1	1415	1415		17.365	4.4058	1	63170			50899	13967	42118	42149	55208	55208					0.06362537696929849
RRGRRAQTE	9	Unmodified	_RRGRRAQTE_					0	0	0		ENST00000409979.6_1_2:228336893-228337256:+|nuORF	ENST00000409979.6_1_2:228336893-228337256:+|nuORF	ENST00000409979.6_1_2:228336893-228337256:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	565.3201904296875	2	565.318494	1128.62244	-1.1079	-0.00062631	2.7879	0.001576	1.68	0.00094973	565.3199879177456	61.149	1.9033	58.39	57.777	59.68	-2.7593					114	36	4	0	0	0	0.42676	1	4555	4555		49.442	3.4693	1	380010			50900	11540	42119	42150	55209	55209					0.063269071519926
RRGRWRHRLLL	11	Unmodified	_RRGRWRHRLLL_					0	0	0		ENST00000371600.7_1_9:139937867-139938101:-|nuORF	ENST00000371600.7_1_9:139937867-139938101:-|nuORF	ENST00000371600.7_1_9:139937867-139938101:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.31060791015625	3	506.983277	1517.928	-5.2644	-0.0026689	-4.1638	-0.002111	-9.4282	-0.0047799	507.3144724038786	162.82	0.28682	162.59	162.35	162.64	-0.22696					8	5	2	0	0	0	0.72573	1	16579	16579		6.001	2.7897	1	68129			50901	10960	42120	42151	55210	55210					0.1897534273589372
RRGSALGKLR	10	Unmodified	_RRGSALGKLR_					0	0	0		chr9:137221738-137221915|421|29.26|0.0|21.48|-|0|RNF208,None|1	chr9:137221738-137221915|421|29.26|0.0|21.48|-|0|RNF208,None|1	chr9:137221738-137221915|421|29.26|0.0|21.48|-|0|RNF208,None|1	MULTI-MSMS	OvCa99_classI_Rep5	1	557.3519287109375	2	557.351806	1112.68906	-0.67722	-0.00037745	-0.13196	-7.3546E-05	-0.80917	-0.00045099	557.3517951887061	27.766	0.94736	27.766	27.542	28.489	0					43	18	3	0	0	0	0.60504	1	869	869		41.427	2.6205	1	2446300			50902	554	42121	42152	55211	55211					0.13722142713891117
RRGSGKVI	8	Unmodified	_RRGSGKVI_					0	0	0		nc|ENSG00000184507|Q86Y26|NUTM1;nc|ENSG00000184507|Q86Y26-3|NUTM1;ENSG00000184507|ENST00000537011|NUTM1	nc|ENSG00000184507|Q86Y26|NUTM1	nc|ENSG00000184507|Q86Y26|NUTM1	MULTI-MSMS	OvCa9_classI_Rep3	3	436.7747497558594	2	436.774868	871.535184	-2.6718	-0.001167	2.6725	0.0011673	0.00067689	2.9565E-07	436.7759504548302	144.44	1.6886	143.47	143.1	144.79	-0.97299					107	33	5	0	0	0	0.74971	1	12047	12047		26.796	0	1	989010			50903	8166	42122	42153	55212	55212					0.09427732948381617
RRGSHTGLT	9	Unmodified	_RRGSHTGLT_					0	0	0		ENST00000262315.13_1_16:839348-839690:+|nuORF	ENST00000262315.13_1_16:839348-839690:+|nuORF	ENST00000262315.13_1_16:839348-839690:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	492.7698669433594	2	492.770314	983.526075	3.4784	0.0017141	-3.702	-0.0018242	-0.2236	-0.00011019	492.7683473461379	26.487	0.60609	23.777	23.613	24.219	-2.7097					21	17	2	0	0	0	0.70685	1	388	388		15.642	0.77694	1	27059			50904	9889	42123	42154	55213	55213					0.03365339592039618
RRGTVPIN	8	Unmodified	_RRGTVPIN_					0	0	0			REV__KDM3A-LTBP1|1|fusion	REV__KDM3A-LTBP1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	456.7720031738281	2	456.772326	911.530098	-2.6183	-0.001196	2.5573	0.0011681	-0.061068	-2.7894E-05	456.77340273142477	142.71	1.7302	141.7	141.28	143.01	-1.0106					71	34	3	0	0	0	0.75241	2	11843	11843;11861		25.45	1.2474	1	453300	+		50905	28330	42124	42155	55214;55215	55214					0.07079429085740685
RRGVGNTVI	9	Unmodified	_RRGVGNTVI_					0	0	0			REV__ENST00000451653.5_2_3:42591058-42591214:-|nuORF	REV__ENST00000451653.5_2_3:42591058-42591214:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	486.289306640625	2	486.290882	970.567212	-1.3386	-0.00065093	-2.6461	-0.0012868	-3.9846	-0.0019377	486.28968430992785	96.173	2.6618	94.345	93.531	96.193	-1.8286					91	52	2	0	0	0	0.40667	1	6292	6292		51.335	1.3109	1	3287800	+		50906	25971	42125	42156	55216	55216					0.08075100631504029
RRGVPAVGG	9	Unmodified	_RRGVPAVGG_					0	0	0			REV__ENST00000442586.1_1_7:79763850-79764393:+|nuORF	REV__ENST00000442586.1_1_7:79763850-79764393:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	434.75946044921875	2	434.759218	867.503883	-0.54476	-0.00023684	0.73073	0.00031769	0.18597	8.0851E-05	434.7594502813862	138.35	2.0585	138.12	137.54	139.6	-0.22697					104	41	4	0	0	0	0.63108	1	13790	13790		28.254	0	1	279250	+		50907	24720	42126	42157	55217	55217					0.06483159914284897
RRGVPAVGG	9	Unmodified	_RRGVPAVGG_					0	0	0			REV__ENST00000442586.1_1_7:79763850-79764393:+|nuORF	REV__ENST00000442586.1_1_7:79763850-79764393:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	434.7586669921875	2	434.759218	867.503883	-1.3377	-0.00058158	1.4594	0.00063449	0.12169	5.2907E-05	434.7597358333452	139.11	1.8707	138.05	137.63	139.51	-1.0595					91	37	4	0	0	0	0.63108	1	11411	11411		28.254	0	1	610970	+		50908	24720	42126	42157	55218	55218					0.06483159914284897
RRGYRAVQV	9	Unmodified	_RRGYRAVQV_					0	0	0			REV__nc|ENSG00000263465|Q9BRL6-2|SRSF8	REV__nc|ENSG00000263465|Q9BRL6-2|SRSF8	MULTI-MSMS	OvCa9_classI_Rep2	2	552.8238525390625	2	552.822881	1103.63121	1.4579	0.00080598	0.87562	0.00048406	2.3336	0.00129	552.8231418896985	126.07	1.3319	125.83	125.55	126.89	-0.2359					72	26	4	0	0	0	0.56889	1	12298	12298		35.618	0	1	197830	+		50909	23578	42127	42158	55219	55219					0.08353880788445167
RRHDLLRRV	9	Unmodified	_RRHDLLRRV_					0	0	0		ENSG00000168040|ENST00000301838|FADD	ENSG00000168040|ENST00000301838|FADD	ENSG00000168040|ENST00000301838|FADD	MULTI-MSMS	OvCa99_classI_Rep5	1	610.8756713867188	2	610.875979	1219.73741	-0.541	-0.00033048	0.20702	0.00012647	-0.33398	-0.00020402	610.8760924208361	33.945	0.62162	33.945	33.776	34.398	0					38	12	4	0	0	0	0.35694	1	1596	1596		49.442	11.63	1	762450			50910	6869	42128	42159	55220	55220					0.1363263635378189
RRHGCLILL	9	Unmodified	_RRHGCLILL_					0	0	0			REV__GMIP|p.S830Rfs*8|1|0.07|ENSG00000089639|chr19:19630519-19630520|CA/-|frameshift_variant	REV__GMIP|p.S830Rfs*8|1|0.07|ENSG00000089639|chr19:19630519-19630520|CA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	540.8236083984375	2	540.826578	1079.6386	-4.8647	-0.0026309	0.47844	0.00025876	-4.3862	-0.0023722	540.8266722246311	155.61	0.48663	155.38	155.16	155.64	-0.22696					29	17	2	0	0	0	0.70177	1	15864	15864		17.365	0.66	1	25176	+		50911	17210	42129	42160	55221	55221					0.10196897064543009
RRHGKVSFS	9	Unmodified	_RRHGKVSFS_					0	0	0		ENST00000453686.1_1_7:12251150-12254492:+|nuORF	ENST00000453686.1_1_7:12251150-12254492:+|nuORF	ENST00000453686.1_1_7:12251150-12254492:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	537.3023681640625	2	537.301781	1072.58901	-2.0429	-0.0010977	1.5144	0.0008137	-0.52851	-0.00028397	537.3025976508426	51.263	1.5868	48.45	48.104	49.691	-2.8129					81	31	4	0	0	0	0.42676	1	3379	3379		49.442	11.63	1	305260			50912	12076	42130	42161	55222	55222					0.05561905380091048
RRHHHTWL	8	Unmodified	_RRHHHTWL_					0	0	0		chr3:150557676-150558388|104|12.05|0.29|5.37|+|0|TE_info:AluSx,AluSx_dup22914,Alu,SINE,donor,-,150557401,150557676|None,EIF2A|1	chr3:150557676-150558388|104|12.05|0.29|5.37|+|0|TE_info:AluSx,AluSx_dup22914,Alu,SINE,donor,-,150557401,150557676|None,EIF2A|1	chr3:150557676-150558388|104|12.05|0.29|5.37|+|0|TE_info:AluSx,AluSx_dup22914,Alu,SINE,donor,-,150557401,150557676|None,EIF2A|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.3447875976562	2	571.807565	1141.60058	-0.57358	-0.00032798	-1.777	-0.0010161	-2.3506	-0.0013441	571.8064387716826	54.64	0.46872	54.64	54.422	54.891	0					23	10	3	0	0	0	0.028476	1	4415	4415		38.806	0	1	947900			50913	476	42131	42162	55223	55223					0.035441471940885094
RRHLRLLL	8	Unmodified	_RRHLRLLL_					0	0	0		ENST00000487330.1_1_9:74975472-74979818:-|nuORF;ENST00000376962.9_1_9:74978504-74980043:-|nuORF	ENST00000487330.1_1_9:74975472-74979818:-|nuORF	ENST00000487330.1_1_9:74975472-74979818:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	538.8641357421875	2	538.861809	1075.70907	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.29	1	136.77	136.27	137.27	-1.5284								0	0	0	0.30129	1	13460	13460		33.516	10.473	1				50914	12642	42132	42163	55224	55224					0.17423938444494524
RRHRPWTL	8	Unmodified	_RRHRPWTL_					0	0	0			REV__ENST00000395724.7_2_16:27856358-28074501:-|nuORF	REV__ENST00000395724.7_2_16:27856358-28074501:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.7674560546875	2	561.325591	1120.63663	0.69997	0.00039291	-1.9616	-0.0011011	-1.2617	-0.00070821	561.3243393238062	58.28	0.62614	58.28	58.069	58.696	0					30	14	3	0	0	0	0.028476	1	4955	4955		38.806	28.219	1	1832100	+		50915	25318	42133	42164	55225	55225					0.08113604370942085
RRHRRRRRREG	11	Unmodified	_RRHRRRRRREG_					0	0	0		ENST00000419807.5_3_2:44395715-44396385:+|nuORF	ENST00000419807.5_3_2:44395715-44396385:+|nuORF	ENST00000419807.5_3_2:44395715-44396385:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	530.9835815429688	3	530.988084	1589.94242	-6.6786	-0.0035463	2.3701	0.0012585	-4.3085	-0.0022878	530.9891908448743	163.98	1.3448	162.59	161.35	162.69	-1.3925					72	30	4	0	0	0	0.72582	1	14293	14293		1.523	1.1516	1	820760			50916	11657	42134	42165	55226	55226					0.17104807936698307
RRHSLSIIF	9	Unmodified	_RRHSLSIIF_					0	0	0			REV__ENST00000424279.5_1_X:9685823-9685994:+|nuORF	REV__ENST00000424279.5_1_X:9685823-9685994:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	564.8334350585938	2	564.835457	1127.65636	-0.86943	-0.00049109	0.30524	0.00017241	-0.56419	-0.00031867	564.8354063300067	55.53	0.54649	52.726	52.382	52.928	-2.804					30	10	4	0	0	0	0.5811	1	3888	3888		34.173	2.2177	1	267850	+		50917	25641	42135	42166	55227	55227					0.09763935591035988
RRHSQVNW	8	Unmodified	_RRHSQVNW_					0	0	0		ENST00000367607.7_2_1:179924016-179959652:+|nuORF	ENST00000367607.7_2_1:179924016-179959652:+|nuORF	ENST00000367607.7_2_1:179924016-179959652:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	541.7837524414062	2	541.783756	1081.55296	1.1001	0.00059603	0.70457	0.00038173	1.8047	0.00097776	541.7841459265117	90.242	2.8271	88.94	88.433	91.26	-1.302					140	54	4	0	0	0	0.47599	1	7960	7960		79.939	10.312	1	1182300			50918	10852	42136	42167	55228	55228					0.015444482032080487
RRHSQVNW	8	Unmodified	_RRHSQVNW_					0	0	0		ENST00000367607.7_2_1:179924016-179959652:+|nuORF	ENST00000367607.7_2_1:179924016-179959652:+|nuORF	ENST00000367607.7_2_1:179924016-179959652:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.7857055664062	2	541.783756	1081.55296	-1.1376	-0.00061634	3.0205	0.0016365	1.8829	0.0010201	541.7853600054635	91.478	2.6779	88.936	88.346	91.024	-2.5425					127	52	5	0	0	0	0.47599	2	7922	7922;7960		79.939	0.22664	1	1891600			50919	10852	42136	42167	55229;55230	55229					0.015444482032080487
RRHVSGRLV	9	Unmodified	_RRHVSGRLV_					0	0	0			REV__nc|ENSG00000071909|Q8WXR4-6|MYO3B	REV__nc|ENSG00000071909|Q8WXR4-6|MYO3B	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3302612304688	2	540.330873	1078.64719	-1.2676	-0.00068491	-0.15427	-8.3358E-05	-1.4218	-0.00076827	540.3307152267141	139.22	4.0818	138.16	137	141.08	-1.0595					200	82	3	0	0	0	0.55011	1	11457	11457		37.812	2.6595	1	55828	+		50920	16905	42137	42168	55231	55231					0.1110158702535955
RRIAQVAL	8	Unmodified	_RRIAQVAL_					0	0	0			REV__ENSG00000167771|ENST00000301459|RCOR2	REV__ENSG00000167771|ENST00000301459|RCOR2	MULTI-MSMS	OvCa9_classI_Rep3	3	463.7979736328125	2	463.798343	925.582134	0.29403	0.00013637	-0.86487	-0.00040112	-0.57084	-0.00026475	463.7979721487958	70.79	6.0908	68.07	67.699	73.79	-2.7196					279	121	5	0	0	0	0.69415	1	3345	3345		44.531	2.0566	1	3593600	+		50921	21308	42138	42169	55232	55232					0.11636592499519338
RRIFSKGF	8	Unmodified	_RRIFSKGF_					0	0	0			REV__ENST00000295404.9_1_19:50200719-50213852:+|nuORF	REV__ENST00000295404.9_1_19:50200719-50213852:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	505.798583984375	2	505.798343	1009.58213	-0.43985	-0.00022248	-3.7813	-0.0019126	-4.2211	-0.002135	505.7961324056165	35.972	0.73483	35.972	35.753	36.487	0					39	15	4	0	0	0	0.68714	1	1866	1866		45.952	7.1458	1	1236600	+		50922	21436	42139	42170	55233	55233					0.0777259249952067
RRIFVLTAM	9	Unmodified	_RRIFVLTAM_					0	0	0			REV__ENSG00000282419|ENST00000632372|TEX13D	REV__ENSG00000282419|ENST00000632372|TEX13D	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8292236328125	2	553.828786	1105.64302	-0.8401	-0.00046527	2.9703	0.001645	2.1302	0.0011798	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.67509	1	14228	14228		23.042	4.7181	1	245610	+		50923	23661	42140	42171	55234	55234					0.09442361487435846
RRIIISAAYHG	11	Unmodified	_RRIIISAAYHG_					0	0	0			REV__nc|ENSG00000156110|P55263-3|ADK;REV__VCL-ADK|12|fusion;REV__VCL-ADK|5|fusion	REV__nc|ENSG00000156110|P55263-3|ADK	MULTI-MSMS	OvCa9_classI_Rep4_	4	628.8618774414062	2	628.864746	1255.71494	1.0406	0.00065438	-4.2853	-0.0026949	-3.2447	-0.0020405	628.8619073964604	36.299	1.3962	33.45	32.889	34.285	-2.849					66	27	4	0	0	0	0.72473	1	1276	1276		19.104	0.84144	1	180820	+		50924	20461;32754;32755	42141	42172	55235	55235					0.09730992165509633
RRIKAETD	8	Unmodified	_RRIKAETD_					0	0	0			REV__nc|ENSG00000091128|A4D0S4-3|LAMB4	REV__nc|ENSG00000091128|A4D0S4-3|LAMB4	MULTI-MSMS	OvCa99_classI_Rep5	1	494.77978515625	2	494.780348	987.546142	-1.0771	-0.00053292	0.20775	0.00010279	-0.86933	-0.00043013	494.7802232220739	36.554	0.58022	36.554	36.397	36.977	0					21	12	2	0	0	0	0.6962	1	1939	1939		44.117	1.6423	1	1103900	+		50925	17241	42142	42173	55236	55236					0.051870905319901794
RRIKLNLILNI	11	Unmodified	_RRIKLNLILNI_					0	0	0		ENST00000439523.1_1_1:247206892-247207219:+|nuORF	ENST00000439523.1_1_1:247206892-247207219:+|nuORF	ENST00000439523.1_1_1:247206892-247207219:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	455.2668762207031	3	455.973273	1364.89799	1.292	0.00058912	-1.5988	-0.00072902	-0.30682	-0.0001399	455.9724573777523	64.82	1.1112	61.826	61.446	62.557	-2.9933					53	21	4	0	0	0	0.026497	1	2565	2565		6.001	0	1	69974			50926	11916	42143	42174	55237	55237					0.23013546227321058
RRIMKLIA	8	Unmodified	_RRIMKLIA_					0	0	0		ENSG00000198964|ENST00000361781|SGMS1;nc|ENSG00000198964|Q86VZ5-2|SGMS1	ENSG00000198964|ENST00000361781|SGMS1	ENSG00000198964|ENST00000361781|SGMS1	MULTI-MSMS	OvCa9_classI_Rep2	2	500.82550048828125	2	500.826047	999.63754	-1.7989	-0.00090096	-2.4296	-0.0012168	-4.2285	-0.0021177	500.8247449295919	61.278	4.4126	58.518	58.094	62.506	-2.7593					209	84	4	0	0	0	0.73288	1	4558	4558		35.201	1.0282	1	946070			50927	8919	42144	42175	55238	55238					0.1377068269563324
RRINFQRLM	9	Unmodified	_RRINFQRLM_					0	0	0		ENST00000602232.5_1_19:53138403-53193715:-|nuORF;ENST00000594682.6_1_19:53122308-53193715:-|nuORF;ENST00000598190.1_1_19:53158712-53193715:-|nuORF	ENST00000602232.5_1_19:53138403-53193715:-|nuORF	ENST00000602232.5_1_19:53138403-53193715:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	617.3495483398438	2	617.353491	1232.69243	-3.3769	-0.0020847	-2.2517	-0.0013901	-5.6286	-0.0034749	617.35192186902	152.13	1.4228	150.69	150.33	151.75	-1.435					86	30	4	0	0	0	0.6653	1	15083	15083		24.203	3.2558	1	233800			50928	14168	42145	42176	55239	55239					0.08539069496237062
RRIPTAIF	8	Unmodified	_RRIPTAIF_					0	0	0			REV__L1MD1_dup3486|chr9:6488282-6488529:-|1.1290293695577864|0.0199908630641251|5.82|429.0|11|1|anti-sense	REV__L1MD1_dup3486|chr9:6488282-6488529:-|1.1290293695577864|0.0199908630641251|5.82|429.0|11|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.2986755371094	2	487.300719	972.586885	-1.2796	-0.00062354	-3.1792	-0.0015492	-4.4588	-0.0021728	487.29906414689214	146.58	1.2256	145.15	144.7	145.92	-1.4357					56	23	3	0	0	0	0.75661	1	14382	14382		19.36	1.0356	1	319100	+		50929	28431	42146	42177	55240	55240					0.099494766422481
RRIRRAQLAH	10	Unmodified	_RRIRRAQLAH_					0	0	0		nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2	nc|ENSG00000143374|Q9BW92-2|TARS2	nc|ENSG00000143374|Q9BW92-2|TARS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	638.8960571289062	2	638.894703	1275.77485	-0.53707	-0.00034313	1.463	0.00093473	0.92598	0.0005916	638.8954846802164	100.88	1.8421	98.613	98.187	100.03	-2.2665					80	36	4	0	0	0	0.64063	1	9058	9058		37.159	4.3467	1	266330			50930	5044	42147	42178	55241	55241					0.14799727619401892
RRIRRERNKMA	11	Unmodified	_RRIRRERNKMA_					0	0	0		nc|ENSG00000170345|P01100-2|FOS;ENSG00000170345|ENST00000303562|FOS	nc|ENSG00000170345|P01100-2|FOS	nc|ENSG00000170345|P01100-2|FOS	MULTI-MSMS	OvCa9_classI_Rep3	3	495.9587097167969	3	495.960032	1484.85827	-6.9468	-0.0034453	4.3009	0.0021331	-2.6459	-0.0013123	495.96210445138047	163.05	2.2058	161.66	160.17	162.38	-1.3926					163	48	5	0	0	0	0.72511	1	14175	14175		14.086	4.4399	1	227040			50931	7095	42148	42179	55242	55242					0.13523096004951185
RRITGANNVL	10	Unmodified	_RRITGANNVL_					0	0	0			REV__tr|A0A553SLU1|A0A553SLU1_NIACI2-dehydro-3-deoxy-D-gluconate5-dehydrogenaseKduDOS=NialliacirculansOX=1397GN=kduDPE=3SV=1	REV__tr|A0A553SLU1|A0A553SLU1_NIACI2-dehydro-3-deoxy-D-gluconate5-dehydrogenaseKduDOS=NialliacirculansOX=1397GN=kduDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.3300170898438	2	557.327996	1112.64144	1.1522	0.00064217	-2.0961	-0.0011682	-0.94389	-0.00052605	557.328393946559	109.81	1.5797	108.21	107.8	109.38	-1.6011					74	29	3	0	0	0	0.50999	1	10068	10068		52.937	12.159	1	372990	+		50932	30264	42149	42180	55243	55243					0.08962443723044089
RRITLPGYVF	10	Unmodified	_RRITLPGYVF_					0	0	0			REV__nc|ENSG00000108684|Q16515|ASIC2	REV__nc|ENSG00000108684|Q16515|ASIC2	MULTI-MSMS	OvCa9_classI_Rep2	2	611.35498046875	2	611.358765	1220.70298	-3.7398	-0.0022864	-0.61625	-0.00037675	-4.3561	-0.0026631	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.73378	1	15201	15201		26.693	2.4902	1	331570	+		50933	28789	42150	42181	55244	55244					0.10145375422303005
RRITPPVL	8	Unmodified	_RRITPPVL_					0	0	0			REV__PCDHA10|p.T460Sfs*119|1|0.04|ENSG00000250120|chr5:140857426-140857427|-/G|frameshift_variant	REV__PCDHA10|p.T460Sfs*119|1|0.04|ENSG00000250120|chr5:140857426-140857427|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	475.79364013671875	2	476.308544	950.602535	0.66117	0.00031492	-2.1167	-0.0010082	-1.4556	-0.00069329	476.30715475932726	80.743	0.82526	78.42	78.131	78.957	-2.3226					25	15	3	0	0	0	0.028476	1	4465	4465		33.516	1.5607	1	50617	+		50934	23492	42151	42182	55245	55245					0.12525763159328562
RRIWISKRPVK	11	Unmodified	_RRIWISKRPVK_					0	0	0			REV__ENST00000443754.1_1_9:67334177-67334237:-|nuORF	REV__ENST00000443754.1_1_9:67334177-67334237:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	480.78228759765625	3	480.308767	1437.90447	-0.97966	-0.00047054	-0.12089	-5.8066E-05	-1.1006	-0.0005286	480.30838904023204	48.398	0.59962	45.654	45.395	45.995	-2.7443					14	11	2	0	0	0	0.026068	1	2993	2993		27.644	11.723	1	17799	+		50935	25873	42152	42183	55246	55246					0.20303484178680264
RRKAAALQPVE	11	Unmodified	_RRKAAALQPVE_					0	0	0			REV__PAXIP1|p.A840Lfs*22|1|0.08|ENSG00000157212|chr7:154957256-154957256|T/-|frameshift_variant	REV__PAXIP1|p.A840Lfs*22|1|0.08|ENSG00000157212|chr7:154957256-154957256|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	619.868408203125	2	619.870028	1237.7255	-2.7857	-0.0017268	1.79	0.0011095	-0.99576	-0.00061724	619.8709153162803	147.4	3.9416	146.45	144.36	148.3	-0.9512					241	78	4	0	0	0	0.72466	1	12332	12332		19.997	1.7347	1	225770	+		50936	29280	42153	42184	55247	55247					0.11614974819917734
RRKAGPPSPGK	11	Unmodified	_RRKAGPPSPGK_					0	0	0			REV__ENSG00000124535|ENST00000380773|WRNIP1	REV__ENSG00000124535|ENST00000380773|WRNIP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8432006835938	2	575.843813	1149.67307	-0.33973	-0.00019563	-0.25402	-0.00014628	-0.59375	-0.00034191	575.8433458482052	142.38	3.7668	140.93	139.05	142.82	-1.4532					179	72	3	0	0	0	0.71789	1	14089	14089		23.523	3.5259	1	165140	+		50937	18691	42154	42185	55248	55248					0.10422436476983421
RRKASLPSLPN	11	Unmodified	_RRKASLPSLPN_					0	0	0			REV__nc|ENSG00000070047|Q9P1Y6-2|PHRF1	REV__nc|ENSG00000070047|Q9P1Y6-2|PHRF1	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8701171875	2	619.870028	1237.7255	-3.6059	-0.0022352	2.5915	0.0016064	-1.0145	-0.00062885	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.72324	1	12756	12756		21.686	1.689	1	664560	+		50938	16875	42155	42186	55249	55249					0.11614974819940471
RRKCPLYL	8	Unmodified	_RRKCPLYL_					0	0	0			REV__ENST00000502976.5_1_3:128889097-128889217:-|nuORF	REV__ENST00000502976.5_1_3:128889097-128889217:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	524.8055419921875	2	524.807854	1047.60115	-1.7558	-0.00092148	-4.3951	-0.0023066	-6.151	-0.0032281	524.8054976909301	92.637	3.4	90.676	90.197	93.597	-1.9617					189	68	5	0	0	0	0.52992	1	5951	5951		74.517	1.6374	1	8798500	+		50939	26836	42156	42187	55250	55250					0.07925805798890906
RRKCSFSRRLW	11	Unmodified	_RRKCSFSRRLW_					0	0	0		ENST00000591822.5_1_16:5122062-5122182:+|nuORF	ENST00000591822.5_1_16:5122062-5122182:+|nuORF	ENST00000591822.5_1_16:5122062-5122182:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.19464111328125	3	498.945611	1493.815	-0.40346	-0.0002013	0.34735	0.00017331	-0.056104	-2.7993E-05	499.2786297331773	49.045	0.17893	49.045	48.94	49.119	0					5	3	2	0	0	0	0.025819	1	3634	3634		20.315	0	1	114500			50940	14126	42157	42188	55251	55251					0.08784906227651845
RRKEEKKDP	9	Unmodified	_RRKEEKKDP_					0	0	0			REV__ENSG00000116754|ENST00000370949|SRSF11	REV__ENSG00000116754|ENST00000370949|SRSF11	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.3567504882812	2	593.338561	1184.66257	-0.91298	-0.0005417	1.1694	0.00069383	0.2564	0.00015213	593.3396718035084	27.766	0.24932	27.766	27.542	27.791	0					5	4	2	0	0	0	0.027438	1	839	839		65.465	0	1	7146.6	+		50941	18318	42158	42189	55252	55252					0.07762409031897732
RRKEKLKFN	9	Unmodified	_RRKEKLKFN_					0	0	0			REV__ENSG00000111404|ENST00000538724|RERGL	REV__ENSG00000111404|ENST00000538724|RERGL	MULTI-MSMS	OvCa99_classI_Rep5	1	406.9194030761719	3	406.919168	1217.73567	0.7816	0.00031805	-0.88426	-0.00035982	-0.10266	-4.1775E-05	406.9187860329458	39.219	0.57449	39.219	38.972	39.547	0					30	12	4	0	0	0	0.63254	1	2279	2279		28.081	2.9555	1	2209900	+		50942	18032	42159	42190	55253	55253					0.13551582545187557
RRKGEVQEE	9	Unmodified	_RRKGEVQEE_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.8355102539062	2	565.799269	1129.58398	0.33658	0.00019044	4.3976	0.0024881	4.7341	0.0026786	565.8023015146003	31.155	0.38253	31.155	31.027	31.41	0					11	7	2	0	0	0	0.027433	1	1247	1247		74.255	26.598	1	137210			50943	5793;36288	42160	42191	55254	55254					0.024375567267952647
RRKHFVGQ	8	Unmodified	_RRKHFVGQ_					0	0	0		nc|ENSG00000165929|Q8N9U0-2|TC2N;ENSG00000165929|ENST00000435962|TC2N	nc|ENSG00000165929|Q8N9U0-2|TC2N	nc|ENSG00000165929|Q8N9U0-2|TC2N	MULTI-MSMS	OvCa9_classI_Rep3	3	514.2977294921875	2	514.299042	1026.58353	-4.6194	-0.0023758	3.2107	0.0016513	-1.4087	-0.0007245	514.3006222329757	152.39	0.9877	151.42	151.04	152.03	-0.97299					50	19	4	0	0	0	0.73626	1	12999	12999		33.516	6.7195	1	117900			50944	6615	42161	42192	55255	55255					0.07130226588265032
RRKHTLES	8	Unmodified	_RRKHTLES_					0	0	0			REV__tr|A0A7D6VQJ5|A0A7D6VQJ5_9CLOTDNA-directedRNApolymerasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=rpoBPE=3SV=1	REV__tr|A0A7D6VQJ5|A0A7D6VQJ5_9CLOTDNA-directedRNApolymerasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=rpoBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.7935180664062	2	513.793789	1025.57303	0.6265	0.00032189	1.7602	0.00090437	2.3867	0.0012263	513.7946041614833	128.88	1.2853	127.42	127.15	128.44	-1.4565					55	25	4	0	0	0	0.73626	1	12355	12355		33.516	0	1	193110	+		50945	31331	42162	42193	55256	55256					0.061261991431820206
RRKKGIYRLLM	11	Unmodified	_RRKKGIYRLLM_					0	0	0			REV__ENST00000443402.6_3_7:38305090-38305201:-|nuORF	REV__ENST00000443402.6_3_7:38305090-38305201:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.80816650390625	3	478.634374	1432.88129	-2.205	-0.0010554	-1.3763	-0.00065876	-3.5814	-0.0017142	478.6335713712547	37.558	1.1336	34.848	34.534	35.667	-2.7097					50	22	3	0	0	0	0.02625	1	1685	1685		18.531	4.445	1	32840	+		50946	25868	42163	42194	55257	55257					0.182167220697238
RRKKKHAFL	9	Unmodified	_RRKKKHAFL_					0	0	0		ENST00000455909.5_1_7:55756730-55756808:-|nuORF	ENST00000455909.5_1_7:55756730-55756808:-|nuORF	ENST00000455909.5_1_7:55756730-55756808:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	592.2816772460938	2	592.380366	1182.74618	2.235	0.001324	0.33741	0.00019987	2.5724	0.0015238	592.3805027445458	85.974	0.24268	85.974	85.83	86.073	0					8	5	2	0	0	0	0.027462	1	9046	9046		20.482	10.217	1	214350			50947	12103	42164	42195	55258	55258					0.16211609990273246
RRKKRDTWNII	11	Unmodified	_RRKKRDTWNII_					0	0	0			REV__tr|A0A7D6VRB1|A0A7D6VRB1_9CLOTMechanosensitiveionchannelfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00835PE=3SV=1	REV__tr|A0A7D6VRB1|A0A7D6VRB1_9CLOTMechanosensitiveionchannelfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00835PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	495.9585876464844	3	495.963548	1484.86881	-6.9468	-0.0034453	-2.7883	-0.0013829	-9.735	-0.0048282	495.96210445138047	163.05	2.2058	161.66	160.17	162.38	-1.3926					163	48	5	0	0	0	0.72483	1	14247	14247		17.833	4.8757	1	227040	+		50948	31401	42165	42196	55259	55259					0.14577401931046552
RRKKRDTWNII	11	Unmodified	_RRKKRDTWNII_					0	0	0			REV__tr|A0A7D6VRB1|A0A7D6VRB1_9CLOTMechanosensitiveionchannelfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00835PE=3SV=1	REV__tr|A0A7D6VRB1|A0A7D6VRB1_9CLOTMechanosensitiveionchannelfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00835PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.9595642089844	3	495.963548	1484.86881	-6.4865	-0.003217	-3.2349	-0.0016044	-9.7214	-0.0048214	495.96187478588956	163.63	1.693	161.99	160.63	162.32	-1.6336					149	48	4	0	0	0	0.72542	1	16191	16191		10.104	0.45776	1	106460	+		50949	31401	42165	42196	55260	55260					0.14577401931046552
RRKLKKRKSLK	11	Unmodified	_RRKLKKRKSLK_					0	0	0			REV__GIGYF2|p.R396Hfs*77|1|0.02|ENSG00000204120|chr2:232791349-232791350|-/CATTC|frameshift_variant	REV__GIGYF2|p.R396Hfs*77|1|0.02|ENSG00000204120|chr2:232791349-232791350|-/CATTC|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	481.0050048828125	3	481.003566	1439.98887	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.282	1	22.282	21.782	22.782	0								0	0	0	0.19474	1	196	196		3.026	1.503	1		+		50950	28156	42166	42197	55261	55261					0.2864743499544602
RRKLKKYSD	9	Unmodified	_RRKLKKYSD_					0	0	0			REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|142|3|sense	REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|142|3|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	597.3584594726562	2	597.359296	1192.70404	-5.052	-0.0030179	4.0389	0.0024127	-1.0131	-0.00060517	597.3615454958483	157.14	0.96848	155.97	155.65	156.62	-1.1707					64	22	4	0	0	0	0.69895	1	13524	13524		18.324	0.95945	1	132000	+		50951	28466	42167	42198	55262	55262					0.11539589791209437
RRKMQLFKRRQ	11	Unmodified	_RRKMQLFKRRQ_					0	0	0			REV__ENSG00000095596|ENST00000224356|CYP26A1	REV__ENSG00000095596|ENST00000224356|CYP26A1	MULTI-MSMS	OvCa9_classI_Rep3	3	516.3088989257812	3	516.312294	1545.91505	-6.1959	-0.003199	1.3885	0.0007169	-4.8074	-0.0024821	516.3131116708117	162.19	3.1861	160.82	159.18	162.36	-1.3692					191	67	4	0	0	0	0.72573	1	14098	14098		6.001	0.30226	1	59102	+		50952	17293	42168	42199	55263	55263					0.163931435614586
RRKMQLFKRRQ	11	Unmodified	_RRKMQLFKRRQ_					0	0	0			REV__ENSG00000095596|ENST00000224356|CYP26A1	REV__ENSG00000095596|ENST00000224356|CYP26A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.3079833984375	3	516.312294	1545.91505	-6.7017	-0.0034602	2.0344	0.0010504	-4.6674	-0.0024098	516.3134990696393	162.76	2.1102	161.13	160.17	162.28	-1.6336					95	58	2	0	0	0	0.72545	2	16080	16080;16121		9.6461	8.1232	1	68937	+		50953	17293	42168	42199	55264;55265	55264					0.163931435614586
RRKPRAWR	8	Unmodified	_RRKPRAWR_					0	0	0		ENST00000467155.6_1_17:46683509-46683713:+|nuORF	ENST00000467155.6_1_17:46683509-46683713:+|nuORF	ENST00000467155.6_1_17:46683509-46683713:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.311279296875	2	563.346858	1124.67916	2.1987	0.0012386	-3.3179	-0.0018691	-1.1192	-0.00063051	563.3447879066181	34.81	0.85383	32.022	31.747	32.601	-2.7881					39	16	3	0	0	0	0.028476	1	1060	1060		18.324	0	1	87517			50954	12305	42169	42200	55266	55266					0.12180999499150857
RRKQDKTRELR	11	Unmodified	_RRKQDKTRELR_					0	0	0		ENST00000478241.6_2_12:56223566-56224012:+|nuORF	ENST00000478241.6_2_12:56223566-56224012:+|nuORF	ENST00000478241.6_2_12:56223566-56224012:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	495.95751953125	3	495.962207	1484.86479	-4.8163	-0.0023887	-2.3422	-0.0011617	-7.1585	-0.0035504	495.96094978154576	162.14	1.4092	161.91	160.94	162.35	-0.22696					77	27	3	0	0	0	0.68059	1	16516	16516		36.318	2.2311	1	83644			50955	12490	42170	42201	55267	55267					0.14175312437328103
RRKQDKTRELR	11	Unmodified	_RRKQDKTRELR_					0	0	0		ENST00000478241.6_2_12:56223566-56224012:+|nuORF	ENST00000478241.6_2_12:56223566-56224012:+|nuORF	ENST00000478241.6_2_12:56223566-56224012:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	495.95843505859375	3	495.962207	1484.86479	-6.9468	-0.0034453	-0.084622	-4.1969E-05	-7.0314	-0.0034873	495.96210445138047	163.05	2.2058	161.66	160.17	162.38	-1.3926					163	48	5	0	0	0	0.70587	1	14195	14195		27.644	10.477	1	227040			50956	12490	42170	42201	55268	55268					0.14175312437328103
RRKREEERRRL	11	Unmodified	_RRKREEERRRL_					0	0	0		ENSG00000009335|ENST00000348165|UBE3C;nc|ENSG00000009335|Q15386-2|UBE3C	ENSG00000009335|ENST00000348165|UBE3C	ENSG00000009335|ENST00000348165|UBE3C	MULTI-MSMS	OvCa99_classI_Rep5	1	528.6488037109375	3	528.648622	1582.92404	1.9693	0.0010411	-2.9696	-0.0015699	-1.0003	-0.00052878	528.647099748133	106.07	1.0586	106.07	105.7	106.76	0					76	23	5	0	0	0	0.72552	1	11941	11941		8.7993	2.7983	1	7321400			50957	928	42171	42202	55269	55269					0.15589208451478953
RRKRNLMA	8	Unmodified	_RRKRNLMA_					0	0	0		ENST00000254579.10_1_11:6578653-6578770:+|nuORF	ENST00000254579.10_1_11:6578653-6578770:+|nuORF	ENST00000254579.10_1_11:6578653-6578770:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.8119506835938	2	522.814002	1043.61345	-4.1208	-0.0021544	-0.63155	-0.00033018	-4.7523	-0.0024846	522.8135945226888	152.85	1.1432	151.42	151.08	152.23	-1.435					63	27	4	0	0	0	0.74679	1	15143	15143		28.254	4.0515	1	215640			50958	9811	42172	42203	55270	55270					0.09338842261968239
RRKRPGVVAG	10	Unmodified	_RRKRPGVVAG_					0	0	0			REV__ENST00000373043.1_2_1:38273978-38274170:+|nuORF	REV__ENST00000373043.1_2_1:38273978-38274170:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	548.3453979492188	2	548.346523	1094.67849	-0.95496	-0.00052365	0.95062	0.00052127	-0.0043402	-2.3799E-06	548.3468764170308	26.513	0.59904	26.513	26.292	26.892	0					23	11	4	0	0	0	0.72319	1	691	691		27.882	0	1	181730	+		50959	25022	42173	42204	55271	55271					0.13494160059462956
RRKRRREEDAR	11	Unmodified	_RRKRRREEDAR_					0	0	0		ENSG00000174137|ENST00000308132|FAM53A	ENSG00000174137|ENST00000308132|FAM53A	ENSG00000174137|ENST00000308132|FAM53A	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.7613220214844	3	509.961089	1526.86144	0.11471	5.8498E-05	3.2029	0.0016333	3.3176	0.0016918	509.96336783079084	31.724	0.39711	31.724	31.509	31.906	0					15	7	3	0	0	0	0.026461	1	1337	1337		2.8518	0	1	41123			50960	7441	42174	42205	55272	55272					0.11908062383304241
RRKSKSLVAD	10	Unmodified	_RRKSKSLVAD_					0	0	0			REV__nc|ENSG00000152942|O75943-3|RAD17	REV__nc|ENSG00000152942|O75943-3|RAD17	MULTI-SECPEP	OvCa9_classI_Rep4_	4	579.977294921875	2	580.348929	1158.6833	-1.1184	-0.00064907	3.9786	0.002309	2.8602	0.0016599	580.3512641988538	105.99	1.338	103.97	103.7	105.03	-2.0161					48	25	3	0	0	0	0.026803	1	9735	9735		32.751	0	1	36010	+		50961	20311	42175	42206	55273	55273					0.11030999411559606
RRKSRRRRCP	10	Unmodified	_RRKSRRRRCP_					0	0	0		ENST00000585403.5_1_17:40719142-40721608:+|nuORF	ENST00000585403.5_1_17:40719142-40721608:+|nuORF	ENST00000585403.5_1_17:40719142-40721608:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	457.60760498046875	3	457.609333	1369.80617	-3.7462	-0.0017143	0.7547	0.00034536	-2.9915	-0.001369	457.60971240856696	157.06	2.9403	156.83	155.39	158.33	-0.22696					220	89	3	0	0	0	0.85358	1	16002	16002		12.207	0.57075	1	46638			50962	14029	42176	42207	55274	55274					0.13605977381871526
RRKVPPSGS	9	Unmodified	_RRKVPPSGS_					0	0	0		ENSG00000110237|ENST00000263674|ARHGEF17;ARHGEF17|p.G1624Rfs*4|1|0.4|ENSG00000110237|chr11:73362607-73362608|-/A|frameshift_variant;ARHGEF17|p.Y1216Sfs*5|1|0.09|ENSG00000110237|chr11:73355937-73355937|A/-|frameshift_variant	ENSG00000110237|ENST00000263674|ARHGEF17	ENSG00000110237|ENST00000263674|ARHGEF17	MULTI-MSMS	OvCa9_classI_Rep2	2	492.2908935546875	2	492.290882	982.567212	-1.3787	-0.00067874	1.1745	0.00057819	-0.20425	-0.00010055	492.2912275187481	35.09	1.142	32.381	32.158	33.3	-2.7097					49	22	4	0	0	0	0.56889	1	1422	1422		35.618	4.0885	1	210830			50963	110	42177	42208	55275	55275					0.07523100631522084
RRKYDRIKWIL	11	Unmodified	_RRKYDRIKWIL_					0	0	0			REV__nc|ENSG00000131323|Q13114-2|TRAF3	REV__nc|ENSG00000131323|Q13114-2|TRAF3	MULTI-MSMS	OvCa9_classI_Rep3	3	516.3095703125	3	516.31581	1545.9256	-6.189	-0.0031955	-4.2083	-0.0021728	-10.397	-0.0053683	516.3135418042255	163.98	1.0401	162.59	161.65	162.69	-1.3925					39	23	3	0	0	0	0.72582	1	14245	14245		3.6191	0.21035	1	765480	+		50964	19005	42178	42209	55276	55276					0.17447449487553968
RRLASTLVHSV	11	Unmodified	_RRLASTLVHSV_					0	0	0		ENST00000505813.1_1_5:110284728-110284920:-|nuORF	ENST00000505813.1_1_5:110284728-110284920:-|nuORF	ENST00000505813.1_1_5:110284728-110284920:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8693237304688	2	619.870028	1237.7255	-3.6059	-0.0022352	2.5915	0.0016064	-1.0145	-0.00062885	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.67529	1	12942	12942		37.812	13.292	1	664560			50965	12899	42179	42210	55277	55277					0.11614974819940471
RRLEDVRA	8	Unmodified	_RRLEDVRA_					0	0	0			REV__ENST00000373851.6_1_9:123874787-123912836:+|nuORF;REV__nc|ENSG00000119397|Q7Z7A1-2|CNTRL	REV__ENST00000373851.6_1_9:123874787-123912836:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7953796386719	2	507.793789	1013.57303	0.21115	0.00010722	1.9802	0.0010055	2.1913	0.0011127	507.7947280281232	128.58	1.4414	127.13	126.85	128.29	-1.4565					78	28	4	0	0	0	0.74229	1	12343	12343		30.504	1.3336	1	608480	+		50966	25051;18439	42180	42211	55278	55278					0.06678199143186703
RRLELYFRKKK	11	Unmodified	_RRLELYFRKKK_					0	0	0		ENST00000332131.8_1_21:37431190-37432810:-|nuORF	ENST00000332131.8_1_21:37431190-37432810:-|nuORF	ENST00000332131.8_1_21:37431190-37432810:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	512.9852294921875	3	512.987693	1535.94125	-4.9038	-0.0025156	0.4465	0.00022905	-4.4573	-0.0022865	512.9879880478285	162.73	1.8375	162.51	160.84	162.68	-0.22697					96	36	4	0	0	0	0.72582	1	16530	16530		3.4087	1.8857	1	139950			50967	10453	42181	42212	55279	55279					0.19471736004561535
RRLEVSQRVL	10	Unmodified	_RRLEVSQRVL_					0	0	0			REV__ENSG00000058453|ENST00000375541|CROCC	REV__ENSG00000058453|ENST00000375541|CROCC	MSMS	OvCa9_classI_Rep4_	4	628.3814086914062	2	628.383303	1254.75205	NaN	NaN	NaN	NaN	NaN	NaN	NaN	152.33	1	150.89	150.39	151.39	-1.435								0	0	0	0.13748	1	15070	15070		26.693	0	1		+		50968	16728	42182	42213	55280	55280					0.1348666371127365
RRLFFANMDA	10	Unmodified	_RRLFFANMDA_					0	0	0		ENST00000532478.5_1_11:47196639-47197406:-|nuORF	ENST00000532478.5_1_11:47196639-47197406:-|nuORF	ENST00000532478.5_1_11:47196639-47197406:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	620.81787109375	2	620.816407	1239.61826	-1.695	-0.0010523	3.3772	0.0020966	1.6822	0.0010444	620.818422631297	38.889	1.3375	36.18	35.915	37.252	-2.7097					75	26	4	0	0	0	0.5675	1	1870	1870		45.972	1.5951	1	501820			50969	13323	42183	42214	55281	55281					0.008036816140474912
RRLFFFLKQQ	10	Unmodified	_RRLFFFLKQQ_					0	0	0			REV__ENSG00000147655|ENST00000276659|RSPO2	REV__ENSG00000147655|ENST00000276659|RSPO2	MULTI-MSMS	OvCa9_classI_Rep4_	4	461.6033935546875	3	461.606701	1381.79827	-6.3818	-0.0029459	0.67872	0.0003133	-5.7031	-0.0026326	461.60686943444614	158.73	0.87054	157.15	156.79	157.66	-1.5858					42	26	2	0	0	0	0.7855	1	15667	15667		20.837	1.5745	1	44044	+		50970	20078	42184	42215	55282	55282					0.12264728613354237
RRLFPEPLPP	10	Unmodified	_RRLFPEPLPP_					0	0	0		ENSG00000187690|ENST00000342995|EZHIP	ENSG00000187690|ENST00000342995|EZHIP	ENSG00000187690|ENST00000342995|EZHIP	MULTI-MSMS	OvCa9_classI_Rep3	3	611.35400390625	2	611.358765	1220.70298	-2.3862	-0.0014588	-2.1755	-0.00133	-4.5616	-0.0027888	611.3572929291362	147.43	3.7918	146.48	144.56	148.35	-0.9512					254	75	5	0	0	0	0.79917	1	12561	12561		19.104	0	1	250910			50971	8425	42185	42216	55283	55283					0.10145375422325742
RRLFRRELRGE	11	Unmodified	_RRLFRRELRGE_					0	0	0			REV__ENST00000468536.5_1_6:33288364-33290691:-|nuORF	REV__ENST00000468536.5_1_6:33288364-33290691:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.6273498535156	3	496.627047	1486.85931	0.71031	0.00035276	0.80401	0.0003993	1.5143	0.00075205	496.62733384626785	34.097	1.1426	31.309	30.854	31.997	-2.7881					58	22	4	0	0	0	0.72511	1	982	982		14.086	3.9821	1	62762	+		50972	26227	42186	42217	55284	55284					0.13535633645483358
RRLFRRELRGE	11	Unmodified	_RRLFRRELRGE_					0	0	0			REV__ENST00000468536.5_1_6:33288364-33290691:-|nuORF	REV__ENST00000468536.5_1_6:33288364-33290691:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	496.627047	1486.85931	-1.276	-0.00063372	2.6507	0.0013164	1.3747	0.00068271	496.62836595846557	34.02	0.64188	31.31	31.119	31.761	-2.7097	0.00062583	0.0021972	NaN	14.086	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26827	+		50973	26227	42186	42217							0.13535633645483358
RRLFRRELRGE	11	Unmodified	_RRLFRRELRGE_					0	0	0			REV__ENST00000468536.5_1_6:33288364-33290691:-|nuORF	REV__ENST00000468536.5_1_6:33288364-33290691:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		3	496.627047	1486.85931	0.71031	0.00035276	0.80401	0.0003993	1.5143	0.00075205	496.62733384626785	34.097	1.1426	31.309	30.854	31.997	-2.7881	-0.00062583	-0.00055416	NaN	14.086	58	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62762	+		50974	26227	42186	42217							0.13535633645483358
RRLHPRGRSS	10	Unmodified	_RRLHPRGRSS_					0	0	0		ENST00000286371.7_1_3:141595540-141622555:+|nuORF;ENST00000465172.5_1_3:141595540-141640837:+|nuORF	ENST00000286371.7_1_3:141595540-141622555:+|nuORF	ENST00000286371.7_1_3:141595540-141622555:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3529663085938	2	611.355411	1220.69627	-1.5159	-0.00092675	2.5609	0.0015656	1.045	0.00063885	611.3567832501896	147.85	3.7824	146.41	144.39	148.17	-1.4351					181	75	4	0	0	0	0.74374	2	14502	14502;14691		25.574	2.6225	1	164640			50975	10077	42187	42218	55285;55286	55285					0.09474875314299425
RRLKRRRGWM	10	Unmodified	_RRLKRRRGWM_					0	0	0			REV__nc|ENSG00000123965|A8MQ11|PMS2P5	REV__nc|ENSG00000123965|A8MQ11|PMS2P5	MULTI-MSMS	OvCa9_classI_Rep3	3	472.281494140625	3	472.286079	1413.83641	-6.0448	-0.0028549	1.1331	0.00053513	-4.9117	-0.0023197	472.28675973301637	159.08	3.3809	157.81	156.71	160.09	-1.267					177	72	4	0	0	0	0.818	1	13667	13667		16.717	2.6314	1	110830	+		50976	28828	42188	42219	55287	55287					0.14604336047023025
RRLLFGSSKGG	11	Unmodified	_RRLLFGSSKGG_					0	0	0		ENST00000409003.4_2_8:119208954-119209107:-|nuORF	ENST00000409003.4_2_8:119208954-119209107:-|nuORF	ENST00000409003.4_2_8:119208954-119209107:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3433227539062	2	589.343646	1176.67274	-5.1334	-0.0030254	3.8974	0.0022969	-1.236	-0.00072842	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.70142	1	12383	12383		29.17	1.0886	1	589610			50977	11510	42189	42220	55288	55288					0.09147016757128767
RRLLFNLGPI	10	Unmodified	_RRLLFNLGPI_					0	0	0		ENST00000356208.9_1_20:55983003-55983105:+|nuORF	ENST00000356208.9_1_20:55983003-55983105:+|nuORF	ENST00000356208.9_1_20:55983003-55983105:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	400.25439453125	3	400.252147	1197.73461	0.78461	0.00031404	2.0626	0.00082558	2.8472	0.0011396	400.25291665426954	69.665	1.3336	69.665	69.347	70.681	0					68	32	4	0	0	0	0.53807	1	6629	6629		49.536	14.358	1	7092600			50978	10692	42190	42221	55289	55289					0.14365368176299853
RRLLFSSPPLP	11	Unmodified	_RRLLFSSPPLP_					0	0	0		ENST00000556553.5_1_14:88851807-88857770:+|nuORF	ENST00000556553.5_1_14:88851807-88857770:+|nuORF	ENST00000556553.5_1_14:88851807-88857770:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8829345703125	2	641.885147	1281.75574	-4.6434	-0.0029805	0.6524	0.00041876	-3.991	-0.0025618	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.72466	1	15425	15425		19.997	3.2794	1	543390			50979	13665	42191	42222	55290	55290					0.12613333485137446
RRLLGPAPE	9	Unmodified	_RRLLGPAPE_					0	0	0		ENSG00000166716|ENST00000560079|ZNF592	ENSG00000166716|ENST00000560079|ZNF592	ENSG00000166716|ENST00000560079|ZNF592	MULTI-MSMS	OvCa9_classI_Rep2	2	504.80072021484375	2	504.801083	1007.58761	-1.3473	-0.00068012	1.0581	0.00053415	-0.28917	-0.00014597	504.80145583104496	39.099	1.0401	36.39	36.112	37.152	-2.7097					52	20	4	0	0	0	0.62352	1	1897	1897		29.15	1.2673	1	219820			50980	6704	42192	42223	55291	55291					0.0841227129131994
RRLLGPSSA	9	Unmodified	_RRLLGPSSA_					0	0	0		ENST00000469466.1_1_22:19131937-19132153:-|nuORF	ENST00000469466.1_1_22:19131937-19132153:-|nuORF	ENST00000469466.1_1_22:19131937-19132153:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.7854919433594	2	478.785433	955.556313	-1.2107	-0.00057965	1.0567	0.00050594	-0.15395	-7.3708E-05	478.7858288212029	146.58	1.5256	145.15	144.7	146.22	-1.4357					68	29	4	0	0	0	0.61208	1	14397	14397		30.504	0	1	466310			50981	12346	42193	42224	55292	55292					0.07675698257230579
RRLLLLLE	8	Unmodified	_RRLLLLLE_					0	0	0			REV__ENST00000379162.8_1_X:24483408-24483594:+|nuORF;REV__ENSG00000255181|ENST00000542437|CCDC166	REV__ENST00000379162.8_1_X:24483408-24483594:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.8165283203125	2	513.345126	1024.6757	0.020993	1.0777E-05	-1.2501	-0.00064171	-1.2291	-0.00063093	513.3443822984206	75.6	0.53539	72.661	72.449	72.985	-2.9389					20	10	3	0	0	0	0.028476	1	5998	5998		42.474	16.9	1	30100	+		50982	25153;23523	42194	42225	55293	55293					0.16434891881931435
RRLLPLPL	8	Unmodified	_RRLLPLPL_					0	0	0		ENSG00000162512|ENST00000339394|SDC3	ENSG00000162512|ENST00000339394|SDC3	ENSG00000162512|ENST00000339394|SDC3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	489.3113708496094	2	489.334562	976.65457	0.36074	0.00017652	-1.6436	-0.00080427	-1.2828	-0.00062774	489.33331807267757	96.373	0.66278	93.948	93.659	94.322	-2.4256					17	12	2	0	0	0	0.028476	1	8538	8538		28.254	6.5519	1	8672.7			50983	6189	42195	42226	55294	55294					0.16530926573091165
RRLLTPAF	8	Unmodified	_RRLLTPAF_					0	0	0		CYP4F22|p.F349Lfs*21|1|0.04|ENSG00000171954|chr19:15544190-15544190|C/-|frameshift_variant;CYP4F22|p.M270Ffs*111|1|0.04|ENSG00000171954|chr19:15540585-15540586|-/TTTTTAAAAAATAATGGCTTTGTTGAGACACA|frameshift_variant;ENSG00000171954|ENST00000269703|CYP4F22;ENSG00000186526|ENST00000612078|CYP4F8	CYP4F22|p.F349Lfs*21|1|0.04|ENSG00000171954|chr19:15544190-15544190|C/-|frameshift_variant	CYP4F22|p.F349Lfs*21|1|0.04|ENSG00000171954|chr19:15544190-15544190|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	487.2983703613281	2	487.300719	972.586885	-2.0582	-0.0010029	-2.2412	-0.0010921	-4.2993	-0.0020951	487.29953188884207	145.86	1.1405	145.64	145.18	146.32	-0.22696					53	22	3	0	0	0	0.74971	1	14694	14694		26.796	3.7594	1	104880			50984	703	42196	42227	55295	55295					0.0994947664225947
RRLLWLREPES	11	Unmodified	_RRLLWLREPES_					0	0	0			REV__ENST00000375911.1_1_6:31627787-31628093:-|nuORF	REV__ENST00000375911.1_1_6:31627787-31628093:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.27459716796875	3	485.612404	1453.81538	-1.0046	-0.00048782	-2.737	-0.0013291	-3.7416	-0.001817	485.61095004925437	45.712	0.31475	42.673	42.543	42.858	-3.0385					8	5	2	0	0	0	0.026145	1	2343	2343		23.378	7.4573	1	18255	+		50985	25095	42197	42228	55296	55296					0.10662604428512168
RRLMGTLIRS	10	Oxidation (M)	_RRLM(Oxidation (M))GTLIRS_		RRLM(1)GTLIRS		RRLM(48)GTLIRS	0	0	1			REV__nc|ENSG00000151532|Q96AJ9-1|VTI1A	REV__nc|ENSG00000151532|Q96AJ9-1|VTI1A	MULTI-MSMS	OvCa99_classI_Rep5	1	609.8604736328125	2	609.858606	1217.70266	2.6547	0.001619	0.020344	1.2407E-05	2.675	0.0016314	609.858572614548	89.06	1.2172	89.06	88.803	90.02	0					78	29	5	0	0	0	0.55109	1	9496	9496		47.96	6.5329	1	17844000	+		50986	20239	42198	42229	55297	55297		473			0.10251632430799873
RRLMGTLIRS	10	Oxidation (M)	_RRLM(Oxidation (M))GTLIRS_					0	0	1			REV__nc|ENSG00000151532|Q96AJ9-1|VTI1A	REV__nc|ENSG00000151532|Q96AJ9-1|VTI1A	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	609.858606	1217.70266	2.6547	0.001619	0.020344	1.2407E-05	2.675	0.0016314	609.858572614548	89.06	1.2172	89.06	88.803	90.02	0	0	0	NaN	47.96	78	29	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17844000	+		50987	20239	42198	42229				473			0.10251632430799873
RRLMRSWRWRW	11	Unmodified	_RRLMRSWRWRW_					0	0	0		ENST00000414613.1_1_2:61164392-61164575:-|nuORF	ENST00000414613.1_1_2:61164392-61164575:-|nuORF	ENST00000414613.1_1_2:61164392-61164575:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	563.7937622070312	3	563.644155	1687.91064	-0.89821	-0.00050627	3.6649	0.0020657	2.7667	0.0015594	563.6461520673461	87.821	1.2202	85.644	85.293	86.513	-2.1768					72	23	5	0	0	0	0.02653	1	5400	5400		6.3209	0	1	264070			50988	11580	42199	42230	55298	55298					0.09419679138545689
RRLMRSWRWRW	11	Unmodified	_RRLMRSWRWRW_					0	0	0		ENST00000414613.1_1_2:61164392-61164575:-|nuORF	ENST00000414613.1_1_2:61164392-61164575:-|nuORF	ENST00000414613.1_1_2:61164392-61164575:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	563.644155	1687.91064	0.5027	0.00028334	1.5966	0.0008999	2.0993	0.0011832	563.644984075485	86.704	1.028	85.273	84.962	85.99	-1.4311	-0.20042	-0.0012637	NaN	6.001	55	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169390			50989	11580	42199	42230							0.09419679138545689
RRLMRSWRWRW	11	Unmodified	_RRLMRSWRWRW_					0	0	0		ENST00000414613.1_1_2:61164392-61164575:-|nuORF	ENST00000414613.1_1_2:61164392-61164575:-|nuORF	ENST00000414613.1_1_2:61164392-61164575:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	563.644155	1687.91064	-1.2208	-0.00068809	3.0693	0.00173	1.8485	0.0010419	563.6458135913499	88.105	1.1079	85.502	85.228	86.336	-2.6027	0.029127	0.0012266	NaN	6.001	41	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236000			50990	11580	42199	42230							0.09419679138545689
RRLPPVRPH	9	Unmodified	_RRLPPVRPH_					0	0	0		nc|ENSG00000198488|Q6ZMB0-2|B3GNT6	nc|ENSG00000198488|Q6ZMB0-2|B3GNT6	nc|ENSG00000198488|Q6ZMB0-2|B3GNT6	MULTI-MSMS	OvCa9_classI_Rep2	2	564.3489990234375	2	564.349066	1126.68358	-0.33582	-0.00018952	-1.5139	-0.00085438	-1.8497	-0.0010439	564.3480708508187	32.562	0.69174	29.852	29.63	30.321	-2.7097					21	13	3	0	0	0	0.69895	1	1091	1091		18.324	0.062328	1	41802			50991	15258	42200	42231	55299	55299					0.12530463922075796
RRLQRHHLFFI	11	Unmodified	_RRLQRHHLFFI_					0	0	0		ENST00000339020.7_1_5:60454855-60455020:-|nuORF	ENST00000339020.7_1_5:60454855-60455020:-|nuORF	ENST00000339020.7_1_5:60454855-60455020:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.74896240234375	3	508.300383	1521.87932	-0.32526	-0.00016533	-2.0868	-0.0010607	-2.4121	-0.0012261	508.29871379576946	78.19	0.66258	76.451	76.144	76.807	-1.7398					16	12	2	0	0	0	0.026488	1	6510	6510		10.104	4.1029	1	8101.1			50992	10544	42201	42232	55300	55300					0.1392542937608141
RRLRARTAW	9	Unmodified	_RRLRARTAW_					0	0	0			REV__ENST00000435633.5_1_3:40498984-40499209:+|nuORF	REV__ENST00000435633.5_1_3:40498984-40499209:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	593.3567504882812	2	593.357422	1184.70029	-0.90353	-0.00053612	-0.7529	-0.00044674	-1.6564	-0.00098285	593.356967109429	27.717	0.89767	27.717	27.542	28.439	0					46	17	5	0	0	0	0.40667	1	839	839		51.335	0.14276	1	1486600	+		50993	25771	42202	42233	55301	55301					0.11532964808020552
RRLRELYPDSE	11	Unmodified	_RRLRELYPDSE_					0	0	0		ENSG00000116981|ENST00000235628|NT5C1A	ENSG00000116981|ENST00000235628|NT5C1A	ENSG00000116981|ENST00000235628|NT5C1A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.2650146484375	3	478.588035	1432.74228	0.056145	2.687E-05	0.010112	4.8395E-06	0.066257	3.171E-05	478.58783630956634	62.271	0.24648	58.814	58.715	58.962	-3.4577					7	4	2	0	0	0	0.026204	1	4310	4310		16.53	3.5724	1	13034			50994	3223	42203	42234	55302	55302					0.043214309152062924
RRLRLRRGRRQ	11	Unmodified	_RRLRLRRGRRQ_					0	0	0			REV__ENST00000316059.6_1_11:58346648-58346858:+|nuORF	REV__ENST00000316059.6_1_11:58346648-58346858:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.6458740234375	3	508.329447	1521.96651	-5.1796	-0.002633	0.22472	0.00011423	-4.9549	-0.0025187	508.3292309848999	162.75	0.1893	162.52	162.4	162.59	-0.22696					7	3	3	0	0	0	0.026553	1	16583	16583		3.2113	2.8991	1	164810	+		50995	24402	42204	42235	55303	55303					0.22640648370361305
RRLRLRRGRRQ	11	Unmodified	_RRLRLRRGRRQ_					0	0	0			REV__ENST00000316059.6_1_11:58346648-58346858:+|nuORF	REV__ENST00000316059.6_1_11:58346648-58346858:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		3	508.329447	1521.96651	-7.138	-0.0036285	1.0218	0.00051942	-6.1162	-0.003109	508.3300258298874	163.98	0.19373	162.59	162.46	162.66	-1.3925	0.065839	0.00047174	NaN	3.2113	7	3	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137920	+		50996	24402	42204	42235							0.22640648370361305
RRLRLRRGRRQ	11	Unmodified	_RRLRLRRGRRQ_					0	0	0			REV__ENST00000316059.6_1_11:58346648-58346858:+|nuORF	REV__ENST00000316059.6_1_11:58346648-58346858:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	508.329447	1521.96651	-6.739	-0.0034256	0.69639	0.000354	-6.0426	-0.0030716	508.32972787042075	164.09	0.34793	162.46	162.18	162.53	-1.6336	-0.063344	-2.4536E-05	NaN	3.2113	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171130	+		50997	24402	42204	42235							0.22640648370361305
RRLRRCPTSII	11	Unmodified	_RRLRRCPTSII_					0	0	0			REV__ENST00000607453.1_1_1:245133290-245134376:-|nuORF	REV__ENST00000607453.1_1_1:245133290-245134376:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	457.6085510253906	3	457.610228	1369.80886	-3.7462	-0.0017143	-1.2014	-0.00054976	-4.9476	-0.0022641	457.60971240856696	157.06	2.9403	156.83	155.39	158.33	-0.22696					220	89	3	0	0	0	0.72466	1	16040	16040		20.03	1.4994	1	46638	+		50998	28086	42205	42236	55304	55304					0.13874387996156656
RRLSAPLPSH	10	Unmodified	_RRLSAPLPSH_					0	0	0			REV__ENST00000505306.5_1_17:48167246-48167522:+|nuORF	REV__ENST00000505306.5_1_17:48167246-48167522:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3284301757812	2	567.330539	1132.64652	-2.3399	-0.0013275	0.99796	0.00056617	-1.3419	-0.00076131	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.79213	1	14448	14448		19.997	0.89325	1	241060	+		50999	26876	42206	42237	55305	55305					0.08550747585650242
RRLSGRQPG	9	Unmodified	_RRLSGRQPG_					0	0	0			REV__ENST00000083182.7_1_17:58603276-58603570:-|nuORF	REV__ENST00000083182.7_1_17:58603276-58603570:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.7992553710938	2	513.799406	1025.58426	0.45399	0.00023326	-0.84229	-0.00043277	-0.3883	-0.00019951	513.7987957920849	32.115	0.81847	29.42	28.786	29.605	-2.6954					76	29	3	0	0	0	0.50149	1	734	734		42.396	13.247	1	87672	+		51000	23678	42207	42238	55306	55306					0.0724902123731681
RRLSIFLRL	9	Unmodified	_RRLSIFLRL_					0	0	0			REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|261|2|anti-sense	REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|261|2|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	587.383544921875	2	587.382574	1172.7506	2.121	0.0012458	0.24311	0.0001428	2.3641	0.0013886	587.3826616659907	82.501	0.93349	82.501	82.101	83.035	0					62	21	4	0	0	0	0.50149	1	8560	8560		42.396	5.237	1	2817200	+		51001	28549	42208	42239	55307	55307					0.1711307441316876
RRLSPLAAQR	10	Unmodified	_RRLSPLAAQR_					0	0	0			REV__ENSG00000104899|ENST00000221496|AMH	REV__ENSG00000104899|ENST00000221496|AMH	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3563842773438	2	584.357088	1166.69962	-2.312	-0.0013511	1.1487	0.00067126	-1.1633	-0.0006798	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.74374	1	14621	14621		25.574	3.6142	1	180810	+		51002	17693	42209	42240	55308	55308					0.12294125368293862
RRLTTTTTL	9	Unmodified	_RRLTTTTTL_					0	0	0		nc|ENSG00000179348|P23769-2|GATA2	nc|ENSG00000179348|P23769-2|GATA2	nc|ENSG00000179348|P23769-2|GATA2	MSMS	OvCa9_classI_Rep4_	4	531.8159790039062	2	531.81693	1061.61931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.4	1	134.85	134.35	135.35	-1.5437								0	0	0	0.17704	1	13232	13232		38.806	8.3025	1				51003	15200	42210	42241	55309	55309					0.0909621925461579
RRLVEIGN	8	Unmodified	_RRLVEIGN_					0	0	0			REV__tr|A0A7D7A790|A0A7D7A790_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_23265PE=4SV=1	REV__tr|A0A7D7A790|A0A7D7A790_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_23265PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	478.7856140136719	2	478.785433	955.556313	-3.0173	-0.0014446	2.9044	0.0013906	-0.11287	-5.4041E-05	478.78669233564773	146.16	1.5937	145.21	144.8	146.39	-0.95947					82	31	4	0	0	0	0.7224	1	12257	12257		38.806	5.9937	1	384210	+		51004	32669	42211	42242	55310	55310					0.07675698257230579
RRLVFWRKRW	10	Unmodified	_RRLVFWRKRW_					0	0	0			REV__ENST00000496390.5_1_X:153928333-153979808:-|nuORF	REV__ENST00000496390.5_1_X:153928333-153979808:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.6358337402344	3	501.637106	1501.88949	-6.8749	-0.0034487	0.13994	7.0201E-05	-6.735	-0.0033785	501.63750106294935	161.08	3.6355	159.45	157.11	160.75	-1.6239					206	87	3	0	0	0	0.8915	1	15984	15984		7.3997	1.3987	1	47462	+		51005	20649	42212	42243	55311	55311					0.1586203710130576
RRLVVTWPPR	10	Unmodified	_RRLVVTWPPR_					0	0	0		chr5:55223023-55226576|318|10.16|0.57|4.16|-|1|MCIDAS,MCIDAS|1;ENST00000513468.5_1_5:54516196-54522465:-|nuORF	chr5:55223023-55226576|318|10.16|0.57|4.16|-|1|MCIDAS,MCIDAS|1	chr5:55223023-55226576|318|10.16|0.57|4.16|-|1|MCIDAS,MCIDAS|1	MULTI-SECPEP	OvCa9_classI_Rep3	3	427.2504577636719	3	427.263046	1278.76731	-0.13935	-5.9537E-05	3.093	0.0013215	2.9536	0.001262	427.26406403566074	90.774	1.3693	88.693	88.209	89.578	-2.0805					66	26	4	0	0	0	0.027089	1	5636	5636		38.754	18.723	1	73230			51006	502	42213	42244	55312	55312					0.13907575299094788
RRMPGIGWLK	10	Unmodified	_RRMPGIGWLK_					0	0	0		ENSG00000167654|ENST00000450849|ATCAY;nc|ENSG00000167654|Q86WG3-3|ATCAY	ENSG00000167654|ENST00000450849|ATCAY	ENSG00000167654|ENST00000450849|ATCAY	MULTI-MSMS	OvCa9_classI_Rep2	2	405.23876953125	3	405.237732	1212.69137	1.1781	0.00047739	0.9391	0.00038056	2.1171	0.00085795	405.2380980368008	45.582	1.7446	42.872	42.448	44.192	-2.7097					104	34	5	0	0	0	0.52162	1	2667	2667		51.528	2.0619	1	1021000			51007	6824	42214	42245	55313	55313					0.0935285512732662
RRMRRRRRWT	10	Unmodified	_RRMRRRRRWT_					0	0	0		ENST00000281708.8_1_4:153271275-153332654:-|nuORF	ENST00000281708.8_1_4:153271275-153332654:-|nuORF	ENST00000281708.8_1_4:153271275-153332654:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	510.6337890625	3	510.635882	1528.88582	-6.8567	-0.0035013	3.407	0.0017397	-3.4497	-0.0017616	510.63751529395284	162.45	3.2228	161.09	159.18	162.4	-1.3692					205	68	4	0	0	0	0.8883	1	14207	14207		7.8045	0	1	98458			51008	10049	42215	42246	55314	55314					0.14253044055840292
RRNHATGIPKF	11	Unmodified	_RRNHATGIPKF_					0	0	0			REV__ENST00000514142.5_1_4:186435855-186436095:-|nuORF	REV__ENST00000514142.5_1_4:186435855-186436095:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	432.91534423828125	3	432.914305	1295.72109	-1.1041	-0.00047799	3.1241	0.0013525	2.02	0.0008745	432.9158567399814	54.785	2.7829	51.971	51.473	54.256	-2.8139					169	55	5	0	0	0	0.70587	1	3831	3831		27.644	0.89421	1	2816800	+		51009	26853	42216	42247	55315	55315					0.0850551039700349
RRNHQPIVEG	10	Unmodified	_RRNHQPIVEG_					0	0	0		ENSG00000174225|ENST00000450049|ARL13A;nc|ENSG00000174225|Q5H913|ARL13A	ENSG00000174225|ENST00000450049|ARL13A	ENSG00000174225|ENST00000450049|ARL13A	MULTI-MSMS	OvCa99_classI_Rep5	1	603.3285522460938	2	603.328528	1204.6425	-0.51405	-0.00031014	0.13735	8.2865E-05	-0.3767	-0.00022728	603.3285547693171	37.554	0.685	37.554	37.298	37.983	0					42	14	5	0	0	0	0.28845	1	2062	2062		82.241	2.5279	1	1313000			51010	7447	42217	42248	55316	55316					0.04836658091949175
RRNRLRGPRG	10	Unmodified	_RRNRLRGPRG_					0	0	0			REV__ENST00000475627.1_1_6:32918275-32920806:-|nuORF	REV__ENST00000475627.1_1_6:32918275-32920806:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.3740234375	2	619.376678	1236.7388	-6.2743	-0.0038862	-1.6741	-0.0010369	-7.9484	-0.0049231	619.3755572557021	159.71	1.0789	158.1	157.75	158.83	-1.6101					53	24	3	0	0	0	0.7759	1	15804	15804		21.96	1.9631	1	88655	+		51011	26355	42218	42249	55317	55317					0.12990270442537621
RRNTVLTT	8	Unmodified	_RRNTVLTT_					0	0	0		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-MSMS	OvCa9_classI_Rep2	2	480.7821960449219	2	480.78289	959.551228	-1.0055	-0.00048344	0.35437	0.00017038	-0.65115	-0.00031306	480.7829878496556	48.434	1.9358	45.674	45.23	47.166	-2.7603					133	38	6	0	0	0	0.62934	1	2998	2998		57.811	2.3071	1	1103900			51012	2585	42219	42250	55318	55318					0.06983394394592324
RRNVRAVV	8	Unmodified	_RRNVRAVV_					0	0	0			REV__nc|ENSG00000072682|O15460|P4HA2	REV__nc|ENSG00000072682|O15460|P4HA2	MULTI-SECPEP	OvCa9_classI_Rep3	3	484.7749938964844	2	485.306867	968.599181	-1.4886	-0.00072243	-2.5587	-0.0012417	-4.0473	-0.0019642	485.3058822713682	92.041	0.30456	90.017	89.737	90.041	-2.0241					7	5	2	0	0	0	0.028476	1	5795	5795		19.36	1.995	1	22783	+		51013	16919	42220	42251	55319	55319					0.11362513105325434
RRNVSTLL	8	Unmodified	_RRNVSTLL_					0	0	0		ENSG00000092140|ENST00000206595|G2E3	ENSG00000092140|ENST00000206595|G2E3	ENSG00000092140|ENST00000206595|G2E3	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.79425048828125	2	479.793258	957.571963	0.51165	0.00024549	1.8509	0.00088803	2.3625	0.0011335	479.793899307987	113.34	1.3883	111.9	111.61	112.99	-1.4461					61	27	4	0	0	0	0.56195	1	10504	10504		71.296	5.4925	1	155500			51014	1887	42221	42252	55320	55320					0.09147984774290308
RRPAAALGG	9	Unmodified	_RRPAAALGG_					0	0	0		ENST00000507035.2_1_5:134374548-134375597:-|nuORF	ENST00000507035.2_1_5:134374548-134375597:-|nuORF	ENST00000507035.2_1_5:134374548-134375597:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	434.7593994140625	2	434.759218	867.503883	-0.54476	-0.00023684	0.73073	0.00031769	0.18597	8.0851E-05	434.7594502813862	138.35	2.0585	138.12	137.54	139.6	-0.22697					104	41	4	0	0	0	0.57242	4	13784	13761;13772;13778;13784		35.201	6.9464	1	279250			51015	12920	42222	42253	55321;55322;55323;55324	55324					0.06483159914284897
RRPAAALGG	9	Unmodified	_RRPAAALGG_					0	0	0		ENST00000507035.2_1_5:134374548-134375597:-|nuORF	ENST00000507035.2_1_5:134374548-134375597:-|nuORF	ENST00000507035.2_1_5:134374548-134375597:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	434.7587890625	2	434.759218	867.503883	-1.3377	-0.00058158	1.4594	0.00063449	0.12169	5.2907E-05	434.7597358333452	139.11	1.8707	138.05	137.63	139.51	-1.0595					91	37	4	0	0	0	0.58665	3	11393	11393;11399;11405		33.516	10.473	1	610970			51016	12920	42222	42253	55325;55326;55327	55325					0.06483159914284897
RRPAAALGG	9	Unmodified	_RRPAAALGG_					0	0	0		ENST00000507035.2_1_5:134374548-134375597:-|nuORF	ENST00000507035.2_1_5:134374548-134375597:-|nuORF	ENST00000507035.2_1_5:134374548-134375597:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	434.7602233886719	2	434.759218	867.503883	1.7873	0.00077704	-1.822	-0.00079215	-0.034747	-1.5107E-05	434.75831214384687	139.52	2.3534	138.02	137.27	139.63	-1.4952					101	45	4	0	0	0	0.63108	1	13580	13580		28.254	5.2176	1	874370			51017	12920	42222	42253	55328	55328					0.06483159914284897
RRPAAKIA	8	Unmodified	_RRPAAKIA_					0	0	0			REV__ENST00000447184.5_1_1:45984722-45987591:-|nuORF	REV__ENST00000447184.5_1_1:45984722-45987591:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	441.7870788574219	2	441.785236	881.555919	1.974	0.00087209	4.2405	0.0018734	6.2145	0.0027455	441.7869815621319	65.076	1.9762	62.352	61.811	63.787	-2.7245					98	38	4	0	0	0	0.75991	1	4999	4999		21.702	4.3374	1	329800	+		51018	25911	42223	42254	55329	55329					0.11040323328029444
RRPAPAQRKW	10	Unmodified	_RRPAPAQRKW_					0	0	0			REV__ENST00000562311.5_3_16:57806174-57831883:-|nuORF	REV__ENST00000562311.5_3_16:57806174-57831883:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.3688354492188	2	633.37053	1264.72651	-2.6571	-0.001683	0.45451	0.00028788	-2.2026	-0.0013951	633.3706685096566	150.42	2.9234	148.98	147.78	150.7	-1.4344					195	63	4	0	0	0	0.71192	1	14812	14812		29.15	0	1	147740	+		51019	27646	42224	42255	55330	55330					0.10473233979496399
RRPAPPGG	8	Unmodified	_RRPAPPGG_					0	0	0			REV__ENSG00000272333|ENST00000420124|KMT2B	REV__ENSG00000272333|ENST00000420124|KMT2B	MULTI-MSMS	OvCa9_classI_Rep2	2	404.23291015625	2	404.232836	806.45112	1.4985	0.00060574	-1.2529	-0.00050645	0.24562	9.9287E-05	404.2322157005619	134.25	0.93222	134.02	133.46	134.39	-0.22697					47	18	3	0	0	0	0.7327	2	13313	13272;13313		15.636	0.77134	1	139150	+		51020	23613	42225	42256	55331;55332	55332					0.040152018514731935
RRPAPPGG	8	Unmodified	_RRPAPPGG_					0	0	0			REV__ENSG00000272333|ENST00000420124|KMT2B	REV__ENSG00000272333|ENST00000420124|KMT2B	MULTI-MSMS	OvCa9_classI_Rep2	2	404.23284912109375	2	404.232836	806.45112	1.3505	0.00054594	-1.1916	-0.00048169	0.15893	6.4246E-05	404.23224424215823	134.98	1.1763	134.75	134.34	135.52	-0.22696					59	23	3	0	0	0	0.74595	2	13378	13378;13399		20.482	8.9708	1	117390	+		51021	23613	42225	42256	55333;55334	55333					0.040152018514731935
RRPAPPGG	8	Unmodified	_RRPAPPGG_					0	0	0			REV__ENSG00000272333|ENST00000420124|KMT2B	REV__ENSG00000272333|ENST00000420124|KMT2B	MULTI-MSMS	OvCa9_classI_Rep4_	4	404.23272705078125	2	404.232836	806.45112	4.3532	0.0017597	-4.1053	-0.0016595	0.24788	0.0001002	404.23103020545994	135.7	1.0357	134.16	133.81	134.84	-1.5437					47	20	3	0	0	0	0.75991	1	13165	13165		21.702	2.3424	1	317610	+		51022	23613	42225	42256	55335	55335					0.040152018514731935
RRPDLLTMV	9	Unmodified	_RRPDLLTMV_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	OvCa99_classI_Rep5	1	550.8175048828125	2	550.815876	1099.6172	2.4269	0.0013368	-0.98271	-0.00054129	1.4442	0.00079548	550.8153288548965	89.255	1.2638	89.255	88.922	90.186	0					58	30	2	0	0	0	0.1804	1	9526	9526		79.713	24.936	1	20000000			51023	6223	42226	42257	55336	55336					0.07137467245138396
RRPGAHAGRR	10	Unmodified	_RRPGAHAGRR_					0	0	0			REV__ENST00000427220.5_1_3:9851662-9852079:+|nuORF	REV__ENST00000427220.5_1_3:9851662-9852079:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3280639648438	2	567.329196	1132.64384	-2.6412	-0.0014984	3.521	0.0019976	0.87979	0.00049913	567.3310908608092	141.92	3.9983	140.91	138.91	142.91	-1.0106					224	80	5	0	0	0	0.7759	1	11715	11715		21.96	3.6978	1	127690	+		51024	25677	42227	42258	55337	55337					0.08282336971365112
RRPHLLHTPR	10	Unmodified	_RRPHLLHTPR_					0	0	0		ENSG00000102886|ENST00000406256|GDPD3	ENSG00000102886|ENST00000406256|GDPD3	ENSG00000102886|ENST00000406256|GDPD3	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8821411132812	2	641.883804	1281.75306	-5.3554	-0.0034376	3.4458	0.0022118	-1.9096	-0.0012257	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.67931	1	13043	13043		32.812	6.1195	1	804890			51025	2262	42228	42259	55338	55338					0.1234492287080684
RRPHRCTPS	9	Carbamidomethyl (C)	_RRPHRC(Carbamidomethyl (C))TPS_	RRPHRC(1)TPS		RRPHRC(64)TPS		0	1	0			REV__ENST00000425916.4_1_10:77163018-77167299:+|nuORF	REV__ENST00000425916.4_1_10:77163018-77167299:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	583.8012084960938	2	583.801623	1165.58869	-1.251	-0.00073034	2.5747	0.0015031	1.3237	0.00077279	583.8030699874896	54.091	2.1426	51.277	50.677	52.82	-2.8139					121	42	5	0	0	0	0.28934	1	3751	3751		64.207	7.4862	1	1035800	+		51026	25658	42229	42260	55339	55339	317				0.01252162388573197
RRPKGPAS	8	Unmodified	_RRPKGPAS_					0	0	0			REV__nc|ENSG00000121274|Q8NDF8-5|TENT4B	REV__nc|ENSG00000121274|Q8NDF8-5|TENT4B	MULTI-MSMS	OvCa9_classI_Rep4_	4	434.76007080078125	2	434.759218	867.503883	1.7873	0.00077704	-1.822	-0.00079215	-0.034747	-1.5107E-05	434.75831214384687	139.52	2.3534	138.02	137.27	139.63	-1.4952					101	45	4	0	0	0	0.75991	1	13661	13661		21.702	0	1	874370	+		51027	28820	42230	42261	55340	55340					0.06483159914284897
RRPKTPAS	8	Unmodified	_RRPKTPAS_					0	0	0		ENST00000426841.6_1_6:138768126-138820433:-|nuORF;ENSG00000135540|ENST00000343505|NHSL1;nc|ENSG00000135540|Q5SYE7|NHSL1	ENST00000426841.6_1_6:138768126-138820433:-|nuORF	ENST00000426841.6_1_6:138768126-138820433:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.7721252441406	2	456.772326	911.530098	0.021393	9.7715E-06	-0.016883	-7.7118E-06	0.0045094	2.0598E-06	456.772221860438	143.17	2.3082	141.72	140.94	143.25	-1.4427					127	44	4	0	0	0	0.7549	1	14070	14070		24.203	1.1603	1	669650			51028	4388	42231	42262	55341	55341					0.07079429085740685
RRPLELPRGT	10	Unmodified	_RRPLELPRGT_					0	0	0		ENST00000416792.1_3_19:55944525-55949973:-|nuORF;ENSG00000187902|ENST00000376325|SHISA7	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8568115234375	2	597.856921	1193.69929	-3.1766	-0.0018991	2.2834	0.0013652	-0.89312	-0.00053396	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.55359	3	14991	14870;14925;14991		47.657	11.211	1	436470			51029	8440	42232	42263	55342;55343;55344	55344					0.11018705648416471
RRPLELPRGT	10	Unmodified	_RRPLELPRGT_					0	0	0		ENST00000416792.1_3_19:55944525-55949973:-|nuORF;ENSG00000187902|ENST00000376325|SHISA7	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	ENST00000416792.1_3_19:55944525-55949973:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8560791015625	2	597.856921	1193.69929	-2.7036	-0.0016164	1.7084	0.0010214	-0.99524	-0.00059501	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.70152	2	12581	12414;12581		30.318	1.4767	1	591030			51030	8440	42232	42263	55345;55346	55346					0.11018705648416471
RRPLLLNSV	9	Unmodified	_RRPLLLNSV_					0	0	0		ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7687207-7690948:-|nuORF	ENSG00000076924|ENST00000358368|XAB2	ENSG00000076924|ENST00000358368|XAB2	MULTI-MSMS	OvCa9_classI_Rep2	2	534.3365478515625	2	534.337833	1066.66111	-1.8836	-0.0010065	1.4667	0.00078373	-0.4169	-0.00022277	534.3385363027232	49.37	2.527	46.609	45.829	48.356	-2.7603					129	50	4	0	0	0	0.56189	1	3135	3135		36.447	11.928	1	911830			51031	1559	42233	42264	55347	55347					0.1304481973379552
RRPPRDVRRRR	11	Unmodified	_RRPPRDVRRRR_					0	0	0		ENST00000263253.8_1_22:41488148-41488439:+|nuORF	ENST00000263253.8_1_22:41488148-41488439:+|nuORF	ENST00000263253.8_1_22:41488148-41488439:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.3114013671875	3	507.313685	1518.91923	-6.7742	-0.0034367	-0.79931	-0.0004055	-7.5736	-0.0038422	507.3132483041696	164.06	2.2283	162.43	160.34	162.57	-1.6336					157	61	4	0	0	0	0.7257	2	16175	16175;16200		6.3209	0.6221	1	124560			51032	9909	42234	42265	55348;55349	55348					0.18052369099359566
RRPPVTMSLLL	11	Unmodified	_RRPPVTMSLLL_					0	0	0			REV__nc|ENSG00000121236|Q9C030|TRIM6	REV__nc|ENSG00000121236|Q9C030|TRIM6	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8812866210938	2	641.886832	1281.75911	-4.0037	-0.0025699	-3.0808	-0.0019775	-7.0844	-0.0045474	642.3862707583961	149.94	3.9275	149.71	147.52	151.45	-0.22696					225	78	5	0	0	0	0.72466	1	15269	15269		19.997	1.7347	1	222110	+		51033	18533	42235	42266	55350	55350					0.12950260267484737
RRPRAAAEA	9	Unmodified	_RRPRAAAEA_					0	0	0		ENST00000546536.5_1_14:105957646-105963882:+|nuORF;ENST00000460959.5_1_14:105957646-105957931:+|nuORF	ENST00000546536.5_1_14:105957646-105963882:+|nuORF	ENST00000546536.5_1_14:105957646-105963882:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	499.286376953125	2	499.286131	996.55771	1.4373	0.00071765	-1.3837	-0.00069087	0.053637	2.678E-05	499.2852483844891	28.641	0.87767	25.931	25.716	26.594	-2.7097					28	18	3	0	0	0	0.64427	1	609	609		26.693	0	1	139830			51034	13536	42236	42267	55351	55351					0.059293323459769454
RRPRGSEDPP	10	Unmodified	_RRPRGSEDPP_					0	0	0			REV__ENSG00000213445|ENST00000534313|SIPA1	REV__ENSG00000213445|ENST00000534313|SIPA1	MULTI-MSMS	OvCa9_classI_Rep3	3	583.802978515625	2	583.804885	1165.59522	0.9784	0.0005712	-4.2361	-0.0024731	-3.2577	-0.0019019	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.79213	1	1443	1443		19.997	0	1	155970	+		51035	23259	42237	42268	55352	55352					0.019043788209501145
RRPRIDSHRR	10	Unmodified	_RRPRIDSHRR_					0	0	0		ENSG00000198398|ENST00000354905|TMEM207	ENSG00000198398|ENST00000354905|TMEM207	ENSG00000198398|ENST00000354905|TMEM207	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.2664489746094	3	450.26422	1347.77083	1.55	0.0006979	3.1626	0.001424	4.7126	0.0021219	450.26554940742795	84.58	1.9686	81.917	81.458	83.427	-2.6629					90	40	3	0	0	0	0.67987	1	7091	7091		32.751	4.669	1	235370			51036	8814	42238	42269	55353	55353					0.11085638125678088
RRPRIDSHRR	10	Unmodified	_RRPRIDSHRR_					0	0	0		ENSG00000198398|ENST00000354905|TMEM207	ENSG00000198398|ENST00000354905|TMEM207	ENSG00000198398|ENST00000354905|TMEM207	MULTI-MATCH	OvCa9_classI_Rep3	3		3	450.26422	1347.77083	-0.90606	-0.00040797	5.3829	0.0024237	4.4769	0.0020158	450.26653972929427	84.242	2.0231	81.981	81.522	83.545	-2.261	0.031809	0.0010549	NaN	32.751	109	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	324170			51037	8814	42238	42269							0.11085638125678088
RRPRKLTL	8	Unmodified	_RRPRKLTL_					0	0	0		nc|ENSG00000149781|Q86UX7|FERMT3	nc|ENSG00000149781|Q86UX7|FERMT3	nc|ENSG00000149781|Q86UX7|FERMT3	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3469848632812	2	520.345992	1038.67743	1.3364	0.00069541	0.90287	0.00046981	2.2393	0.0011652	520.346442572037	129.27	2.7244	129.04	128.62	131.35	-0.22697					153	54	5	0	0	0	0.7224	1	12759	12759		38.806	2.3594	1	2451300			51038	15087	42239	42270	55354	55354					0.15963945690555192
RRPRVRGA	8	Unmodified	_RRPRVRGA_					0	0	0			REV__ENST00000371873.9_1_1:47799697-47834181:+|nuORF	REV__ENST00000371873.9_1_1:47799697-47834181:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.26898193359375	2	484.304659	966.594764	-1.3564	-0.00065689	4.0542	0.0019635	2.6979	0.0013066	484.30660090479387	50.632	0.61806	47.459	47.153	47.771	-3.1734					14	11	2	0	0	0	0.028476	1	2926	2926		35.201	8.4046	1	12026	+		51039	24990	42240	42271	55355	55355					0.11013048682411863
RRPVGIGGT	9	Unmodified	_RRPVGIGGT_					0	0	0		ENST00000328914.4_1_7:4802101-4802248:+|nuORF	ENST00000328914.4_1_7:4802101-4802248:+|nuORF	ENST00000328914.4_1_7:4802101-4802248:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	456.7722473144531	2	456.772326	911.530098	-0.55209	-0.00025218	0.40157	0.00018343	-0.15052	-6.8753E-05	456.77237766888294	142.31	1.8774	142.08	141.37	143.25	-0.22697					97	37	4	0	0	0	0.53957	1	14236	14236		38.806	8.3025	1	225920			51040	10425	42241	42272	55356	55356					0.07079429085752054
RRPVGIGGT	9	Unmodified	_RRPVGIGGT_					0	0	0		ENST00000328914.4_1_7:4802101-4802248:+|nuORF	ENST00000328914.4_1_7:4802101-4802248:+|nuORF	ENST00000328914.4_1_7:4802101-4802248:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	456.7727355957031	2	456.772326	911.530098	-2.6183	-0.001196	2.5573	0.0011681	-0.061068	-2.7894E-05	456.77340273142477	142.71	1.7302	141.7	141.28	143.01	-1.0106					71	34	3	0	0	0	0.61208	2	11867	11867;11881		30.504	6.3009	1	453300			51041	10425	42241	42272	55357;55358	55357					0.07079429085752054
RRPVVPSTS	9	Unmodified	_RRPVVPSTS_					0	0	0		sp|P16788|UL97_HCMVASerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL97PE=1SV=1;sp|Q6SW46|UL97_HCMVMSerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL97PE=3SV=1	sp|P16788|UL97_HCMVASerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL97PE=1SV=1	sp|P16788|UL97_HCMVASerine/threonineproteinkinaseUL97OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL97PE=1SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.7898254394531	2	499.790715	997.566878	0.63993	0.00031983	-0.93131	-0.00046546	-0.29138	-0.00014563	499.789944047043	37.057	1.895	34.165	33.295	35.19	-2.8925					67	37	4	0	0	0	0.63422	1	1334	1334		27.882	2.4321	1	232070			51042	32900	42242	42273	55359	55359					0.06799680911672112
RRQARGAVGRR	11	Unmodified	_RRQARGAVGRR_					0	0	0			REV__ENST00000239223.3_1_5:172197224-172198187:-|nuORF	REV__ENST00000239223.3_1_5:172197224-172198187:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8815307617188	2	641.88741	1281.76027	-4.0037	-0.0025699	-3.9801	-0.0025547	-7.9837	-0.0051246	642.3862707583961	149.94	3.9275	149.71	147.52	151.45	-0.22696					225	78	5	0	0	0	0.72479	1	15203	15203		18.262	4.125	1	222110	+		51043	23820	42243	42274	55360	55360					0.13065655471268656
RRQCRFPLLLL	11	Unmodified	_RRQCRFPLLLL_					0	0	0			REV__ENST00000463674.5_1_21:42613685-42647548:+|nuORF	REV__ENST00000463674.5_1_21:42613685-42647548:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	472.2825012207031	3	472.286974	1413.83909	-4.523	-0.0021362	-2.5092	-0.0011851	-7.0322	-0.0033212	472.2858462265512	156.47	2.2502	156.24	155.31	157.56	-0.22696					106	67	2	0	0	0	0.7257	1	15929	15929		6.3209	0	1	35994	+		51044	22273	42244	42275	55361	55361					0.1487274666135363
RRQCRFPLLLL	11	Unmodified	_RRQCRFPLLLL_					0	0	0			REV__ENST00000463674.5_1_21:42613685-42647548:+|nuORF	REV__ENST00000463674.5_1_21:42613685-42647548:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		3	472.286974	1413.83909	-4.523	-0.0021362	-2.5092	-0.0011851	-7.0322	-0.0033212	472.2858462265512	156.47	2.2502	156.24	155.31	157.56	-0.22696	0	0	NaN	6.3209	106	67	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35994	+		51045	22273	42244	42275							0.1487274666135363
RRQKHQKT	8	Unmodified	_RRQKHQKT_					0	0	0		SMARCA4-C19orf38|1|fusion	SMARCA4-C19orf38|1|fusion	SMARCA4-C19orf38|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.334716796875	2	541.320506	1080.62646	-0.30276	-0.00016389	-2.3367	-0.0012649	-2.6394	-0.0014288	541.3189730860287	29.79	0.19822	29.79	29.636	29.835	0					5	3	2	0	0	0	0.028476	1	1086	1086		18.324	0	1	6433.5			51046	32840	42245	42276	55362	55362					0.0893699664570704
RRQLFSFLL	9	Unmodified	_RRQLFSFLL_					0	0	0			REV__ENST00000392563.5_1_17:73315881-73316043:-|nuORF	REV__ENST00000392563.5_1_17:73315881-73316043:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	590.35791015625	2	590.353483	1178.69241	2.3508	0.0013878	3.9689	0.002343	6.3197	0.0037308	590.3557573260669	26.884	0.37163	24.174	24.022	24.394	-2.7097					25	13	2	0	0	0	0.73026	1	415	415		7.6903	0	1	18171	+		51047	25264	42246	42277	55363	55363					0.11021392767906946
RRQLPLLV	8	Unmodified	_RRQLPLLV_					0	0	0			REV__nc|ENSG00000103932|Q9BWH6-2|RPAP1	REV__nc|ENSG00000103932|Q9BWH6-2|RPAP1	MULTI-MSMS	OvCa9_classI_Rep2	2	497.8291931152344	2	497.829643	993.644734	1.6522	0.0008225	-2.095	-0.0010429	-0.44279	-0.00022044	497.8285287048733	88.973	2.1743	87.605	87.231	89.406	-1.3676					112	43	4	0	0	0	0.69415	1	7810	7810		44.531	0	1	825450	+		51048	17636	42247	42278	55364	55364					0.14765738567700737
RRQPKEIT	8	Unmodified	_RRQPKEIT_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;HECTD4|p.P3258Rfs*65|1|0.06|ENSG00000173064|chr12:112184791-112184792|-/C|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-2|HECTD4;ENST00000550968.5_1_12:112641421-112665930:-|nuORF	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-MSMS	OvCa99_classI_Rep5	1	514.3015747070312	2	514.30399	1026.59343	-0.82132	-0.00042241	0.47371	0.00024363	-0.3476	-0.00017877	514.3040807066577	39.961	0.58368	39.961	39.756	40.34	0					18	12	2	0	0	0	0.7224	1	2394	2394		38.806	1.647	1	616350			51049	7345	42248	42279	55365	55365					0.0811936980298924
RRQQIRTKNLL	11	Unmodified	_RRQQIRTKNLL_					0	0	0		nc|ENSG00000145016|Q92622-3|RUBCN;nc|ENSG00000145016|Q92622-2|RUBCN;ENSG00000145016|ENST00000296343|RUBCN	nc|ENSG00000145016|Q92622-3|RUBCN	nc|ENSG00000145016|Q92622-3|RUBCN	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.96173095703125	3	475.963548	1424.86881	-1.6328	-0.00077717	-4.0232	-0.0019149	-5.656	-0.0026921	475.9615468309244	107.77	2.2527	105.89	105.54	107.79	-1.8785					122	44	4	0	0	0	0.72516	1	9879	9879		13.508	3.404	1	542170			51050	5197	42249	42280	55366	55366					0.17337401931035856
RRQQVFRR	8	Unmodified	_RRQQVFRR_					0	0	0		ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	MULTI-SECPEP	OvCa9_classI_Rep3	3	572.3585205078125	2	573.341772	1144.66899	0.63028	0.00036137	-3.7866	-0.002171	-3.1563	-0.0018096	573.3394417878775	65.591	1.1691	62.645	62.198	63.368	-2.9459					37	22	2	0	0	0	0.028476	1	2685	2685		24.203	0	1	58770			51051	1668	42250	42281	55367	55367					0.10244391773926509
RRQREPGPL	9	Unmodified	_RRQREPGPL_					0	0	0		ENST00000302506.7_2_3:48229669-48229807:-|nuORF	ENST00000302506.7_2_3:48229669-48229807:-|nuORF	ENST00000302506.7_2_3:48229669-48229807:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	554.8202514648438	2	554.820338	1107.62612	0.068121	3.7795E-05	0.076022	4.2179E-05	0.14414	7.9974E-05	554.8202645878819	22.051	0.36197	22.051	21.905	22.267	0					23	10	3	0	0	0	0.62352	1	164	164		29.15	2.4566	1	94417			51052	10199	42251	42282	55368	55368					0.07661576925852387
RRQRKVGRPYV	11	Unmodified	_RRQRKVGRPYV_					0	0	0			REV__RSBN1|p.S81Y|1|0.22|ENSG00000081019|chr1:113812171-113812171|G/T|missense_variant	REV__RSBN1|p.S81Y|1|0.22|ENSG00000081019|chr1:113812171-113812171|G/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	472.28192138671875	3	472.288254	1413.84293	-5.4674	-0.0025822	-4.0561	-0.0019156	-9.5235	-0.0044978	472.286486090062	156.6	1.7536	155.43	154.84	156.59	-1.1707					66	39	2	0	0	0	0.72466	1	13478	13478		20.03	7.073	1	58221	+		51053	29345	42252	42283	55369	55369					0.1525655247942268
RRQRLHHMLFW	11	Unmodified	_RRQRLHHMLFW_					0	0	0			REV__ENSG00000132716|ENST00000368074|DCAF8	REV__ENSG00000132716|ENST00000368074|DCAF8	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.9347534179688	3	527.289489	1578.84664	-0.95244	-0.00050221	0.82242	0.00043365	-0.13003	-6.8561E-05	527.2901454658913	28.464	0.44803	28.464	28.19	28.638	0					11	8	2	0	0	0	0.026435	1	952	952		9.6461	0	1	44079	+		51054	19100	42253	42284	55370	55370					0.08036898981617924
RRQRLPGY	8	Unmodified	_RRQRLPGY_					0	0	0		ENST00000249016.4_1_22:41075352-41075709:+|nuORF	ENST00000249016.4_1_22:41075352-41075709:+|nuORF	ENST00000249016.4_1_22:41075352-41075709:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3027954101562	2	523.304324	1044.5941	-0.69596	-0.0003642	-0.72937	-0.00038168	-1.4253	-0.00074588	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.74679	1	13715	13715		28.254	0.37203	1	130240			51055	9786	42254	42285	55371	55371					0.0735820924271593
RRQRQARRK	9	Unmodified	_RRQRQARRK_					0	0	0			REV__ENST00000468290.1_1_9:136198707-136199617:-|nuORF	REV__ENST00000468290.1_1_9:136198707-136199617:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	627.8848266601562	2	627.889952	1253.76535	-6.0951	-0.003827	-1.5445	-0.00096979	-7.6396	-0.0047968	627.8888127520664	159.21	1.3634	157.94	157.66	159.03	-1.267					65	26	3	0	0	0	0.61208	1	13773	13773		30.504	0.18592	1	154460	+		51056	20098	42255	42286	55372	55372					0.148619593338708
RRQRRRRERDR	11	Unmodified	_RRQRRRRERDR_					0	0	0		ENST00000452135.6_3_5:179707603-179719088:-|nuORF	ENST00000452135.6_3_5:179707603-179719088:-|nuORF	ENST00000452135.6_3_5:179707603-179719088:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.3211059570312	3	547.323132	1638.94757	-0.44543	-0.0002438	-3.6294	-0.0019865	-4.0748	-0.0022303	547.3211396630616	21.57	1.3162	20.231	19.864	21.18	-1.3386					81	25	4	0	0	0	0.72548	1	182	182		9.2118	3.2108	1	240140			51057	12052	42256	42287	55373	55373					0.15365067008656297
RRQRRRRLRLP	11	Unmodified	_RRQRRRRLRLP_					0	0	0		ENST00000397992.5_1_16:72984846-73092758:-|nuORF	ENST00000397992.5_1_16:72984846-73092758:-|nuORF	ENST00000397992.5_1_16:72984846-73092758:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.307373046875	3	521.673214	1561.99781	-0.88397	-0.00046114	3.9301	0.0020502	3.0461	0.0015891	522.009963189428	24.088	0.25122	24.088	23.937	24.188	0					11	4	3	0	0	0	0.026551	1	400	400		3.4087	1.8857	1	18151			51058	11361	42257	42288	55374	55374					0.23929221404478085
RRQTLLEI	8	Unmodified	_RRQTLLEI_					0	0	0		ENST00000591360.1_1_18:56203896-56204202:+|nuORF	ENST00000591360.1_1_18:56203896-56204202:+|nuORF	ENST00000591360.1_1_18:56203896-56204202:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	514.815185546875	2	514.81419	1027.61383	1.4409	0.00074178	2.5022	0.0012881	3.943	0.0020299	514.8152681516877	127.8	1.4064	126.71	126.36	127.76	-1.0933					69	27	4	0	0	0	0.56195	1	10040	10040		71.296	0	1	280660			51059	14118	42258	42289	55375	55375					0.10112540462819197
RRQVQHRYWRQ	11	Unmodified	_RRQVQHRYWRQ_					0	0	0			REV__nc|ENSG00000141577|Q9UPN4-3|CEP131	REV__nc|ENSG00000141577|Q9UPN4-3|CEP131	MULTI-MSMS	OvCa99_classI_Rep5	1	538.2951049804688	3	538.294179	1611.86071	1.2191	0.00065621	-0.69188	-0.00037244	0.52718	0.00028378	538.29382156276	91.096	0.97791	91.096	90.816	91.794	0					65	23	5	0	0	0	0.72542	1	9803	9803		10.104	3.783	1	11365000	+		51060	19751	42259	42290	55376	55376					0.07925267734253794
RRQVQHRYWRQ	11	Unmodified	_RRQVQHRYWRQ_					0	0	0			REV__nc|ENSG00000141577|Q9UPN4-3|CEP131	REV__nc|ENSG00000141577|Q9UPN4-3|CEP131	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.8267211914062	3	538.294179	1611.86071	-0.23183	-0.00012479	-3.5929	-0.001934	-3.8247	-0.0020588	538.2921915740084	92.277	1.2251	90.253	89.941	91.166	-2.0241					60	25	3	0	0	0	0.026221	1	5903	5903		19.263	10.463	1	638630	+		51061	19751	42259	42290	55377	55377					0.07925267734253794
RRQVQHRYWRQ	11	Unmodified	_RRQVQHRYWRQ_					0	0	0			REV__nc|ENSG00000141577|Q9UPN4-3|CEP131	REV__nc|ENSG00000141577|Q9UPN4-3|CEP131	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	538.294179	1611.86071	1.2191	0.00065621	-0.69188	-0.00037244	0.52718	0.00028378	538.29382156276	91.096	0.97791	91.096	90.816	91.794	0	0	0	NaN	10.104	65	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11365000	+		51062	19751	42259	42290							0.07925267734253794
RRRAGRTKM	9	Unmodified	_RRRAGRTKM_					0	0	0			REV__ENST00000510148.1_1_5:179921418-179921547:+|nuORF	REV__ENST00000510148.1_1_5:179921418-179921547:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.2913208007812	2	566.335633	1130.65671	2.2558	0.0012775	-1.0754	-0.00060903	1.1804	0.00066849	566.3357701615323	137.74	0.18726	137.74	137.59	137.78	0					5	3	2	0	0	0	0.027462	1	16073	16073		30.318	20.612	1	10867	+		51063	26935	42260	42291	55378	55378					0.09661032039252859
RRRCRWCCDTW	11	Unmodified	_RRRCRWCCDTW_					0	0	0			REV__nc|ENSG00000186891|Q9Y5U5-2|TNFRSF18	REV__nc|ENSG00000186891|Q9Y5U5-2|TNFRSF18	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.3015747070312	3	514.232546	1539.67581	-0.84876	-0.00043646	-2.3686	-0.001218	-3.2174	-0.0016545	514.2311639464241	39.924	0.21773	39.924	39.798	40.016	0					8	4	2	0	0	0	0.026364	1	2394	2394		13.508	0	1	82090	+		51064	29057	42261	42292	55379	55379					-0.0724412272365953
RRRCSRWSR	9	Unmodified	_RRRCSRWSR_					0	0	0			REV__ENST00000313871.8_1_X:1718167-1719558:+|nuORF	REV__ENST00000313871.8_1_X:1718167-1719558:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	630.88720703125	2	631.841614	1261.66867	0.96226	0.00060799	-2.8321	-0.0017894	-1.8698	-0.0011814	631.8399163179482	69.797	0.45033	67.077	66.806	67.256	-2.7196					14	8	2	0	0	0	0.027462	1	3129	3129		32.812	0	1	14204	+		51065	24374	42262	42293	55380	55380					0.04830648782422031
RRRELMEEFFI	11	Unmodified	_RRRELMEEFFI_					0	0	0			REV__ENSG00000172538|ENST00000311787|FAM170B	REV__ENSG00000172538|ENST00000311787|FAM170B	MULTI-MSMS	OvCa9_classI_Rep3	3	509.2713317871094	3	509.269649	1524.78712	0.77642	0.00039541	3.0637	0.0015602	3.8401	0.0019556	509.2711434456893	66.676	1.6117	63.788	63.477	65.089	-2.8873					96	31	5	0	0	0	0.70587	1	2765	2765		27.644	6.6117	1	276460	+		51066	21709	42263	42294	55381	55381					0.04571538456889357
RRRHRRRFLAR	11	Unmodified	_RRRHRRRFLAR_					0	0	0			REV__ENST00000563939.2_1_16:67063920-67070621:+|nuORF	REV__ENST00000563939.2_1_16:67063920-67070621:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.3405151367188	3	527.329558	1578.96685	-3.2541	-0.001716	2.4912	0.0013137	-0.76285	-0.00040227	527.6652135013336	88.099	1.0076	85.496	85.179	86.186	-2.6027					41	19	3	0	0	0	0.026538	1	7477	7477		5.6988	2.6728	1	62110	+		51067	27662	42264	42295	55382	55382					0.20052068090240027
RRRHWGLRKRT	11	Unmodified	_RRRHWGLRKRT_					0	0	0		ENST00000354981.6_3_20:16506794-16554074:-|nuORF	ENST00000354981.6_3_20:16506794-16554074:-|nuORF	ENST00000354981.6_3_20:16506794-16554074:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.334228515625	3	507.974781	1520.90251	-1.3488	-0.00068513	2.5	0.0012699	1.1512	0.00058481	508.31105796265115	43.443	0.72327	40.436	40.168	40.891	-3.0074					29	13	3	0	0	0	0.026344	1	2098	2098		19.263	9.6165	1	65115			51068	10670	42265	42296	55383	55383					0.1628986821340277
RRRIQITI	8	Unmodified	_RRRIQITI_					0	0	0		ENSG00000100852|ENST00000345122|ARHGAP5;nc|ENSG00000100852|Q13017-2|ARHGAP5	ENSG00000100852|ENST00000345122|ARHGAP5	ENSG00000100852|ENST00000345122|ARHGAP5	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.346435546875	2	528.343449	1054.67235	2.5925	0.0013697	-0.057475	-3.0366E-05	2.535	0.0013394	528.3433828644603	130.98	1.0893	129.51	129.21	130.3	-1.4779					50	22	3	0	0	0	0.65062	1	12580	12580		53.351	0	1	98721			51069	2112	42266	42297	55384	55384					0.14719641827946361
RRRISRSD	8	Unmodified	_RRRISRSD_					0	0	0			REV__tr|A0A553SK12|A0A553SK12_NIACITranscriptionalrepressorNrdROS=NialliacirculansOX=1397GN=nrdRPE=3SV=1	REV__tr|A0A553SK12|A0A553SK12_NIACITranscriptionalrepressorNrdROS=NialliacirculansOX=1397GN=nrdRPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3029174804688	2	523.302313	1044.59007	-0.69596	-0.0003642	3.1142	0.0016297	2.4183	0.0012655	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.75241	1	13731	13731		25.45	0.93098	1	130240	+		51070	30063	42267	42298	55385	55385					0.06956119749020218
RRRKHRRMLRS	11	Unmodified	_RRRKHRRMLRS_					0	0	0			REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF	REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	517.9849243164062	3	517.983171	1550.92768	2.1474	0.0011123	1.1531	0.00059728	3.3005	0.0017096	517.9837026186864	89.091	1.1309	89.091	88.803	89.933	0					92	27	5	0	0	0	0.72575	1	9541	9541		5.6988	0	1	6645600	+		51071	20691	42268	42299	55386	55386					0.17425599744342435
RRRKKRGRREW	11	Unmodified	_RRRKKRGRREW_					0	0	0		ENST00000486943.1_3_X:49065690-49065852:-|nuORF	ENST00000486943.1_3_X:49065690-49065852:-|nuORF	ENST00000486943.1_3_X:49065690-49065852:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3195190429688	3	528.657452	1582.95053	-0.71005	-0.00037537	1.8468	0.00097631	1.1367	0.00060094	528.6583874217306	37.901	0.53976	37.901	37.714	38.254	0					17	11	2	0	0	0	0.026472	1	2089	2089		12.433	6.4318	1	73455			51072	12632	42269	42300	55387	55387					0.1823694213348972
RRRKKSQF	8	Unmodified	_RRRKKSQF_					0	0	0			REV__ENSG00000012963|ENST00000013070|UBR7	REV__ENSG00000012963|ENST00000013070|UBR7	MULTI-MSMS	OvCa9_classI_Rep2	2	553.337646484375	2	553.338698	1104.66284	-3.3842	-0.0018726	1.8191	0.0010066	-1.5652	-0.00086607	553.3396004097149	154.97	0.78694	154.74	154.48	155.26	-0.22696					36	19	3	0	0	0	0.75241	1	15796	15796		25.45	4.5032	1	38307	+		51073	16501	42270	42301	55388	55388					0.11469873542409914
RRRLELYFRKK	11	Unmodified	_RRRLELYFRKK_					0	0	0		ENST00000332131.8_1_21:37431190-37432810:-|nuORF	ENST00000332131.8_1_21:37431190-37432810:-|nuORF	ENST00000332131.8_1_21:37431190-37432810:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.3185424804688	3	522.323076	1563.9474	-6.8634	-0.0035849	0.64231	0.00033549	-6.2211	-0.0032494	522.3234606284219	162.53	1.9698	160.91	159.49	161.46	-1.6239					75	50	2	0	0	0	0.72577	1	16043	16043		5.4129	2.5611	1	25643			51074	10453	42271	42302	55389	55389					0.1879825423609418
RRRLKRGL	8	Unmodified	_RRRLKRGL_					0	0	0			REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF	REV__ENST00000530731.5_1_11:124495676-124501136:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	527.8603515625	2	527.857058	1053.69956	2.3831	0.0012579	2.6567	0.0014024	5.0398	0.0026603	527.8583668428064	94.537	0.72685	94.537	94.306	95.033	0					45	16	4	0	0	0	0.75426	1	10295	10295		18.324	0	1	1569000	+		51075	27209	42272	42303	55390	55390					0.1748617015898617
RRRLPYRRIHP	11	Unmodified	_RRRLPYRRIHP_					0	0	0		ENST00000292894.1_1_19:36530505-36530886:-|nuORF	ENST00000292894.1_1_19:36530505-36530886:-|nuORF	ENST00000292894.1_1_19:36530505-36530886:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.3122253417969	3	507.311282	1518.91202	-6.7743	-0.0034367	3.9385	0.001998	-2.8358	-0.0014386	507.3132483041696	164.06	2.2283	162.43	160.34	162.57	-1.6336					157	61	4	0	0	0	0.72582	1	16129	16129		3.4087	0.19739	1	124560			51076	10105	42273	42304	55391	55391					0.17331636498965963
RRRLRRRVGPE	11	Unmodified	_RRRLRRRVGPE_					0	0	0			REV__ENST00000430857.5_1_7:100136843-100136927:+|nuORF	REV__ENST00000430857.5_1_7:100136843-100136927:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.759765625	3	484.302786	1449.88653	1.9436	0.00094127	-2.9766	-0.0014416	-1.033	-0.00050029	484.30127815567323	134.2	0.6992	134.2	133.86	134.56	0					37	14	4	0	0	0	0.02625	1	15658	15658		18.531	8.8849	1	244260	+		51077	25717	42274	42305	55392	55392					0.1795816197654858
RRRLTSFRH	9	Unmodified	_RRRLTSFRH_					0	0	0			REV__tr|A0A553SSR5|A0A553SSR5_NIACIIntegraseOS=NialliacirculansOX=1397GN=CEQ21_03485PE=4SV=1	REV__tr|A0A553SSR5|A0A553SSR5_NIACIIntegraseOS=NialliacirculansOX=1397GN=CEQ21_03485PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	410.2420654296875	3	410.242645	1227.70611	0.41029	0.00016832	-1.2412	-0.0005092	-0.83094	-0.00034089	410.24214594819574	28.712	0.44859	28.712	28.439	28.888	0					20	8	4	0	0	0	0.60342	1	961	961		31.53	4.4825	1	218710	+		51078	30868	42275	42306	55393	55393					0.10136063319691857
RRRLTSFRH	9	Unmodified	_RRRLTSFRH_					0	0	0			REV__tr|A0A553SSR5|A0A553SSR5_NIACIIntegraseOS=NialliacirculansOX=1397GN=CEQ21_03485PE=4SV=1	REV__tr|A0A553SSR5|A0A553SSR5_NIACIIntegraseOS=NialliacirculansOX=1397GN=CEQ21_03485PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	410.242645	1227.70611	0.41029	0.00016832	-1.2412	-0.0005092	-0.83094	-0.00034089	410.24214594819574	28.712	0.44859	28.712	28.439	28.888	0	0	0	NaN	31.53	20	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218710	+		51079	30868	42275	42306							0.10136063319691857
RRRMKRRRRWI	11	Unmodified	_RRRMKRRRRWI_					0	0	0		ENST00000257749.8_2_6:90661229-90661412:-|nuORF	ENST00000257749.8_2_6:90661229-90661412:-|nuORF	ENST00000257749.8_2_6:90661229-90661412:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.79736328125	3	557.346332	1669.01717	0.035222	1.9631E-05	1.934	0.0010779	1.9693	0.0010976	557.6818339402339	33.388	0.29703	33.388	33.236	33.533	0					8	5	2	0	0	0	0.026525	1	1524	1524		1.523	1.2366	1	22797			51080	9829	42276	42307	55394	55394					0.209418544237451
RRRMLINSQRR	11	Unmodified	_RRRMLINSQRR_					0	0	0		ENST00000371485.7_1_10:95262882-95262948:+|nuORF	ENST00000371485.7_1_10:95262882-95262948:+|nuORF	ENST00000371485.7_1_10:95262882-95262948:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	495.958740234375	3	495.960032	1484.85827	-6.9468	-0.0034453	4.3009	0.0021331	-2.6459	-0.0013123	495.96210445138047	163.05	2.2058	161.66	160.17	162.38	-1.3926					163	48	5	0	0	0	0.72516	1	14203	14203		13.508	1.0751	1	227040			51081	10956	42277	42308	55395	55395					0.13523096004928448
RRRPRRHQQRQ	11	Unmodified	_RRRPRRHQQRQ_					0	0	0		ENST00000296564.8_2_5:5422898-5422991:+|nuORF	ENST00000296564.8_2_5:5422898-5422991:+|nuORF	ENST00000296564.8_2_5:5422898-5422991:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	525.3101196289062	3	525.308823	1572.90464	1.3047	0.00068538	1.15	0.00060411	2.4547	0.0012895	525.3094544380557	29.381	0.42328	26.671	26.456	26.88	-2.7097					16	8	3	0	0	0	0.72582	1	704	704		3.4087	0	1	17069			51082	10139	42278	42309	55396	55396					0.14110296951253076
RRRPRRRWELR	11	Unmodified	_RRRPRRRWELR_					0	0	0			REV__ENST00000291572.12_1_21:45404383-45404527:+|nuORF	REV__ENST00000291572.12_1_21:45404383-45404527:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	545.6617431640625	3	546.332968	1635.97708	-7.1526	-0.0039077	1.3338	0.00072871	-5.8188	-0.003179	546.3336752429057	163.98	0.51614	162.59	162.14	162.66	-1.3925					17	11	3	0	0	0	0.02656	1	14321	14321		0.31226	0.31226	1	212950	+		51083	24157	42279	42310	55397	55397					0.1845263102482022
RRRQEIIV	8	Unmodified	_RRRQEIIV_					0	0	0			REV__ENST00000560141.2_1_15:45023912-45024338:+|nuORF	REV__ENST00000560141.2_1_15:45023912-45024338:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	535.3333740234375	2	535.333082	1068.65161	-0.11896	-6.3681E-05	-0.39238	-0.00021005	-0.51133	-0.00027373	535.3326942586043	51.355	0.83321	51.355	51.12	51.953	0					36	19	3	0	0	0	0.66057	1	3967	3967		51.335	0	1	1095300	+		51084	27610	42280	42311	55398	55398					0.12003051448255064
RRRQRRRRERD	11	Unmodified	_RRRQRRRRERD_					0	0	0		ENST00000452135.6_3_5:179707603-179719088:-|nuORF	ENST00000452135.6_3_5:179707603-179719088:-|nuORF	ENST00000452135.6_3_5:179707603-179719088:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	409.91888427734375	4	410.744168	1638.94757	0.63044	0.00025895	-4.3403	-0.0017827	-3.7098	-0.0015238	410.74235238177795	21.607	1.5439	20.269	19.737	21.281	-1.3386					94	30	6	0	0	0	0.026525	1	165	165		3.6191	0.21035	1	161900			51085	12052	42281	42312	55399	55399					0.15365067008679034
RRRRAARERRP	11	Unmodified	_RRRRAARERRP_					0	0	0			REV__ENST00000334306.3_1_4:77818266-77818710:-|nuORF	REV__ENST00000334306.3_1_4:77818266-77818710:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.7757873535156	3	493.969919	1478.88793	1.7042	0.00084184	-2.442	-0.0012063	-0.73776	-0.00036443	493.9688290265408	77.694	0.12707	77.694	77.629	77.757	0					4	2	2	0	0	0	0.026302	1	7842	7842		22.562	13.35	1	88922	+		51086	24562	42282	42313	55400	55400					0.16763796065265524
RRRRDWYKIRL	11	Unmodified	_RRRRDWYKIRL_					0	0	0			REV__ENSG00000189132|ENST00000329357|FAM47B	REV__ENSG00000189132|ENST00000329357|FAM47B	MULTI-MSMS	OvCa9_classI_Rep4_	4	539.9853515625	3	539.990208	1616.9488	-7.1877	-0.0038813	-1.0705	-0.00057807	-8.2582	-0.0044594	539.9896103629828	164.18	0.35674	162.54	162.24	162.6	-1.6387					19	8	4	0	0	0	0.72582	1	16225	16225		3.2113	1.6883	1	412140	+		51087	22764	42283	42314	55401	55401					0.1649988832486997
RRRRFKKKDVS	11	Unmodified	_RRRRFKKKDVS_					0	0	0		ENSG00000176692|ENST00000649859|FOXC2	ENSG00000176692|ENST00000649859|FOXC2	ENSG00000176692|ENST00000649859|FOXC2	MSMS	OvCa9_classI_Rep4_	4	492.63494873046875	3	492.639176	1474.8957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	158.63	1	157.04	156.54	157.54	-1.5858								0	0	0	0.19474	1	15660	15660		8.7993	2.4784	1				51088	7622	42284	42315	55402	55402					0.17724510542211647
RRRRFLWRRT	10	Unmodified	_RRRRFLWRRT_					0	0	0			REV__sp|P09707|US31_HCMVAUncharacterizedproteinHHRF6OS=Humancytomegalovirus(strainAD169)OX=10360GN=US31PE=3SV=3	REV__sp|P09707|US31_HCMVAUncharacterizedproteinHHRF6OS=Humancytomegalovirus(strainAD169)OX=10360GN=US31PE=3SV=3	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.6341552734375	3	501.63951	1501.8967	-6.9477	-0.0034852	-3.9634	-0.0019882	-10.911	-0.0054734	501.6376473335916	163.82	2.1567	162.19	160.45	162.61	-1.6336					144	60	3	0	0	0	0.8883	1	16184	16184		7.8045	1.1449	1	101620	+		51089	29387	42285	42316	55403	55403					0.16582769701767575
RRRRLLPGHWR	11	Unmodified	_RRRRLLPGHWR_					0	0	0		ENST00000433005.1_1_7:17338824-17338914:-|nuORF	ENST00000433005.1_1_7:17338824-17338914:-|nuORF	ENST00000433005.1_1_7:17338824-17338914:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.634521484375	3	501.63951	1501.8967	-6.9477	-0.0034852	-3.9634	-0.0019882	-10.911	-0.0054734	501.6376473335916	163.82	2.1567	162.19	160.45	162.61	-1.6336					144	60	3	0	0	0	0.7257	1	16163	16163		6.3209	0.31984	1	101620			51090	11820	42286	42317	55404	55404					0.16582769701767575
RRRRNRTY	8	Unmodified	_RRRRNRTY_					0	0	0			REV__ENST00000481195.5_1_5:133561503-133561806:-|nuORF	REV__ENST00000481195.5_1_5:133561503-133561806:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3425903320312	2	589.342304	1176.67005	-3.0464	-0.0017953	4.1753	0.0024607	1.1289	0.00066533	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.7549	1	14927	14927		24.203	0	1	272220	+		51091	26473	42287	42318	55405	55405					0.08878606142843637
RRRRQAVN	8	Unmodified	_RRRRQAVN_					0	0	0		ENST00000155926.8_1_2:12857176-12857593:+|nuORF	ENST00000155926.8_1_2:12857176-12857593:+|nuORF	ENST00000155926.8_1_2:12857176-12857593:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	528.3195190429688	2	528.318297	1054.62204	-1.2877	-0.00068031	3.6049	0.0019046	2.3173	0.0012242	528.3201028484496	56.253	2.2315	53.449	52.879	55.11	-2.804					126	44	4	0	0	0	0.66704	1	3942	3942		50.025	15.852	1	541320			51092	9633	42288	42319	55406	55406					0.09691532222791466
RRRRQLRQQRQ	11	Unmodified	_RRRRQLRQQRQ_					0	0	0			REV__ENST00000394166.7_1_15:96874192-96874351:+|nuORF	REV__ENST00000394166.7_1_15:96874192-96874351:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	527.6500854492188	3	527.652478	1579.9356	-0.68838	-0.00036322	-4.4363	-0.0023408	-5.1247	-0.0027041	527.6501052712146	29.131	1.0466	29.131	28.739	29.785	0					59	20	5	0	0	0	0.72573	1	1010	1010		6.001	0	1	329750	+		51093	25293	42289	42320	55407	55407					0.1688345026548177
RRRRQRWRRFE	11	Unmodified	_RRRRQRWRRFE_					0	0	0		ENST00000525786.1_1_11:96120692-96123066:-|nuORF;ENST00000524836.1_1_11:96119342-96123066:-|nuORF	ENST00000525786.1_1_11:96120692-96123066:-|nuORF	ENST00000525786.1_1_11:96120692-96123066:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.2803955078125	3	567.996356	1700.96724	2.1409	0.001216	4.4136	0.0025069	6.5545	0.0037229	568.3337665744434	108.58	0.17413	108.58	108.45	108.63	0					5	3	2	0	0	0	0.026559	1	12280	12280		1.523	1.1825	1	51770			51094	13171	42290	42321	55408	55408					0.14479443019422433
RRRRRGAESSR	11	Unmodified	_RRRRRGAESSR_					0	0	0		ENST00000520371.5_1_6:100010789-100016588:-|nuORF	ENST00000520371.5_1_6:100010789-100016588:-|nuORF	ENST00000520371.5_1_6:100010789-100016588:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	462.9367980957031	3	462.934763	1385.78246	0.079191	3.666E-05	3.9218	0.0018156	4.001	0.0018522	462.9367014144655	44.408	4.3763	41.698	41.303	45.679	-2.7097					263	87	6	0	0	0	0.57194	3	2577	2571;2577;2583		47.228	12.049	1	4456400			51095	13103	42291	42322	55409;55410;55411	55410					0.10499835149039427
RRRRRGSPH	9	Unmodified	_RRRRRGSPH_					0	0	0			REV__PKD2|p.M870Wfs*6|1|0.22|ENSG00000118762|chr4:88074895-88074895|T/-|frameshift_variant	REV__PKD2|p.M870Wfs*6|1|0.22|ENSG00000118762|chr4:88074895-88074895|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3419799804688	2	589.34792	1176.68129	-4.3129	-0.0025418	-4.2429	-0.0025005	-8.5557	-0.0050423	589.3453728975387	144.79	3.9151	143.81	141.71	145.63	-0.97299					242	78	5	0	0	0	0.6653	1	12069	12069		24.203	2.5004	1	192050	+		51096	18414	42292	42323	55412	55412					0.10001428236978427
RRRRRHSA	8	Unmodified	_RRRRRHSA_					0	0	0		ENST00000356978.8_1_14:90863393-90866410:+|nuORF;ENST00000447653.7_1_14:90863393-90865345:+|nuORF	ENST00000356978.8_1_14:90863393-90866410:+|nuORF	ENST00000356978.8_1_14:90863393-90866410:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	547.8278198242188	2	547.829363	1093.64417	-6.0458	-0.003312	0.69997	0.00038347	-5.3458	-0.0029286	547.8295905768617	154.78	1.79	153.77	152.92	154.71	-1.0076					93	40	3	0	0	0	0.75208	1	13342	13342		17.365	0	1	69775			51097	10706	42293	42324	55413	55413					0.10109756691235816
RRRRRHSA	8	Unmodified	_RRRRRHSA_					0	0	0		ENST00000356978.8_1_14:90863393-90866410:+|nuORF;ENST00000447653.7_1_14:90863393-90865345:+|nuORF	ENST00000356978.8_1_14:90863393-90866410:+|nuORF	ENST00000356978.8_1_14:90863393-90866410:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.8277587890625	2	547.829363	1093.64417	-4.8131	-0.0026367	-0.63019	-0.00034524	-5.4433	-0.002982	547.8288597088392	154.99	1.902	153.5	152.83	154.73	-1.4911					109	49	3	0	0	0	0.7594	1	15328	15328		21.96	0	1	64964			51098	10706	42293	42324	55414	55414					0.10109756691235816
RRRRRLARNRF	11	Unmodified	_RRRRRLARNRF_					0	0	0		nc|ENSG00000156299|Q13009-2|TIAM1;ENSG00000156299|ENST00000541036|TIAM1	nc|ENSG00000156299|Q13009-2|TIAM1	nc|ENSG00000156299|Q13009-2|TIAM1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.3138427734375	3	519.657563	1555.95086	-0.93603	-0.00048641	-1.3342	-0.00069332	-2.2702	-0.0011797	519.6568106282821	52.381	0.78881	49.568	49.345	50.134	-2.8129					20	15	2	0	0	0	0.026435	1	3499	3499		9.6461	6.4348	1	29360			51099	5834	42294	42325	55415	55415					0.19512361853344373
RRRRRLARNRF	11	Unmodified	_RRRRRLARNRF_					0	0	0		nc|ENSG00000156299|Q13009-2|TIAM1;ENSG00000156299|ENST00000541036|TIAM1	nc|ENSG00000156299|Q13009-2|TIAM1	nc|ENSG00000156299|Q13009-2|TIAM1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	519.657563	1555.95086	-0.93614	-0.00048647	-0.3953	-0.00020542	-1.3314	-0.00069189	519.6573144054252	52.882	0.69741	49.674	49.451	50.149	-3.208	0.053107	0.00098328	NaN	9.6461	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34504			51100	5834	42294	42325							0.19512361853344373
RRRRRRRRHYH	11	Unmodified	_RRRRRRRRHYH_					0	0	0		ENST00000337565.9_1_2:111878510-111881339:+|nuORF	ENST00000337565.9_1_2:111878510-111881339:+|nuORF	ENST00000337565.9_1_2:111878510-111881339:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2620849609375	3	569.007478	1704.00061	-0.62041	-0.00035302	2.7966	0.0015913	2.1762	0.0012383	569.0089340223102	25.737	0.24967	25.737	25.594	25.843	0					10	4	3	0	0	0	0.02656	1	593	593		1.4188	1.0473	1	30775			51101	10528	42295	42326	55416	55416					0.1767648958200425
RRRRRRRRQAR	11	Unmodified	_RRRRRRRRQAR_					0	0	0			REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF	REV__ENST00000524945.5_1_8:70745220-70745430:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.663818359375	3	541.679362	1622.01626	2.4905	0.0013491	1.6046	0.0008692	4.0952	0.0022183	541.6802856076567	89.115	0.6729	89.115	88.843	89.516	0					44	16	4	0	0	0	0.026461	1	9562	9562		2.8518	0	1	1530800	+		51102	27108	42296	42327	55417	55417					0.2301277609903991
RRRRRRRRQQQ	11	Unmodified	_RRRRRRRRQQQ_					0	0	0		ENST00000405737.2_2_13:41635036-41635183:-|nuORF	REV__ENST00000405737.2_2_13:41635036-41635183:-|nuORF	REV__ENST00000405737.2_2_13:41635036-41635183:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	551.3383178710938	3	551.339005	1650.99519	-1.1599	-0.00063949	-0.64717	-0.00035681	-1.807	-0.00099629	551.3384849236281	27.522	0.54979	27.522	27.241	27.791	0					27	10	4	0	0	0	0.72582	1	824	824		1.4188	0.096825	1	161980			51103	11471	42297	42328	55418	55418					0.19572765999532749
RRRRRRRWRRR	11	Unmodified	_RRRRRRRWRRR_					0	0	0		ENST00000510148.1_1_5:179921418-179921547:+|nuORF;ENST00000556735.1_1_14:51134724-51134856:-|nuORF	ENST00000510148.1_1_5:179921418-179921547:+|nuORF	ENST00000510148.1_1_5:179921418-179921547:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	441.7796325683594	4	442.282523	1765.10099	-1.1433	-0.00050566	-1.6166	-0.00071501	-2.7599	-0.0012207	442.2818884951304	41.869	0.97346	38.888	38.645	39.618	-2.9804					23	18	2	0	0	0	0.026554	1	1901	1901		1.2319	0	1	76120			51104	12968	42298	42329	55419	55419					0.24904146635640245
RRRRRSAS	8	Unmodified	_RRRRRSAS_					0	0	0		ENSG00000126461|ENST00000360565|SCAF1;ENST00000361272.8_2_8:17102747-17104366:-|nuORF	ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	MULTI-MSMS	OvCa9_classI_Rep3	3	522.8111572265625	2	522.815922	1043.61729	-5.1562	-0.0026958	-3.3325	-0.0017423	-8.4887	-0.0044381	522.8140763744603	152.4	1.0707	151.42	151.09	152.16	-0.97299					54	21	4	0	0	0	0.74971	1	13003	13003		26.796	0	1	172960			51105	3783	42299	42330	55420	55420					0.09722648080014551
RRRRRSRRYLD	11	Unmodified	_RRRRRSRRYLD_					0	0	0		ENST00000245157.9_1_16:56553867-56553957:-|nuORF	ENST00000245157.9_1_16:56553867-56553957:-|nuORF	ENST00000245157.9_1_16:56553867-56553957:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8099365234375	3	530.648845	1588.92471	-0.078245	-4.152E-05	-2.6801	-0.0014222	-2.7584	-0.0014637	530.6473682277618	105.1	0.52965	105.1	104.87	105.4	0					19	11	2	0	0	0	0.026551	1	11788	11788		3.4087	3.0373	1	244440			51106	9774	42300	42331	55421	55421					0.15380047891198956
RRRRRSRWLRH	11	Unmodified	_RRRRRSRWLRH_					0	0	0			REV__ENST00000389561.6_1_12:132551999-132562003:+|nuORF	REV__ENST00000389561.6_1_12:132551999-132562003:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	545.6637573242188	3	545.664829	1633.97266	-5.1048	-0.0027855	0.71664	0.00039104	-4.3882	-0.0023945	545.6650641187133	162.79	0.46675	162.57	162.21	162.68	-0.22696					17	9	3	0	0	0	0.72575	1	16600	16600		5.6988	4.3769	1	454250	+		51107	25228	42301	42332	55422	55422					0.18103166601895282
RRRRRSRWLRH	11	Unmodified	_RRRRRSRWLRH_					0	0	0			REV__ENST00000389561.6_1_12:132551999-132562003:+|nuORF	REV__ENST00000389561.6_1_12:132551999-132562003:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	545.6617431640625	3	545.664829	1633.97266	-7.0491	-0.0038464	0.50405	0.00027504	-6.545	-0.0035714	545.6650160567729	163.98	0.2774	162.59	162.42	162.69	-1.3925					10	5	2	0	0	0	0.72582	1	14321	14321		0.3405	0	1	824500	+		51108	25228	42301	42332	55423	55423					0.18103166601895282
RRRRRSRWLRH	11	Unmodified	_RRRRRSRWLRH_					0	0	0			REV__ENST00000389561.6_1_12:132551999-132562003:+|nuORF	REV__ENST00000389561.6_1_12:132551999-132562003:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		3	545.664829	1633.97266	-5.1048	-0.0027855	0.71664	0.00039104	-4.3882	-0.0023945	545.6650641187133	162.79	0.46675	162.57	162.21	162.68	-0.22696	0.012944	0.00028066	NaN	5.6988	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	454250	+		51109	25228	42301	42332							0.18103166601895282
RRRRRSRWLRH	11	Unmodified	_RRRRRSRWLRH_					0	0	0			REV__ENST00000389561.6_1_12:132551999-132562003:+|nuORF	REV__ENST00000389561.6_1_12:132551999-132562003:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		3	545.664829	1633.97266	-7.0491	-0.0038464	0.50405	0.00027504	-6.545	-0.0035714	545.6650160567729	163.98	0.2774	162.59	162.42	162.69	-1.3925	0.033927	-6.7352E-05	NaN	5.6988	10	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	824500	+		51110	25228	42301	42332							0.18103166601895282
RRRRRVILHFQ	11	Unmodified	_RRRRRVILHFQ_					0	0	0		L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|125|3|sense	L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|125|3|sense	L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|125|3|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	512.9857177734375	3	512.986798	1535.93856	-4.9038	-0.0025156	2.1914	0.0011242	-2.7124	-0.0013914	512.9879880478285	162.73	1.8375	162.51	160.84	162.68	-0.22697					96	36	4	0	0	0	0.72545	4	16581	16547;16551;16556;16581		9.6461	6.4348	1	139950			51111	14739	42302	42333	55424;55425;55426;55427	55427					0.19203325390299142
RRRRRVILHFQ	11	Unmodified	_RRRRRVILHFQ_					0	0	0		L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|125|3|sense	L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|125|3|sense	L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|125|3|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.9852294921875	3	512.986798	1535.93856	-6.5915	-0.0033814	3.674	0.0018847	-2.9176	-0.0014967	512.9885265039754	160.8	2.6264	159.19	157.99	160.62	-1.6101					147	60	4	0	0	0	0.72573	1	15943	15943		6.001	2.5923	1	58638			51112	14739	42302	42333	55428	55428					0.19203325390299142
RRRRRVILHFQ	11	Unmodified	_RRRRRVILHFQ_					0	0	0		L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|125|3|sense	L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|125|3|sense	L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|125|3|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.9849853515625	3	512.986798	1535.93856	-6.6121	-0.0033919	3.7351	0.0019161	-2.877	-0.0014759	512.9886707533774	164.07	1.5176	162.43	161.01	162.53	-1.6336					104	42	3	0	0	0	0.72582	1	16201	16201		3.026	1.503	1	186650			51113	14739	42302	42333	55429	55429					0.19203325390299142
RRRRRWRRWRG	11	Unmodified	_RRRRRWRRWRG_					0	0	0			REV__ENST00000396912.1_1_7:5085705-5085882:+|nuORF	REV__ENST00000396912.1_1_7:5085705-5085882:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.2993774414062	3	566.340457	1695.99954	2.053	0.0011627	-3.8679	-0.0021905	-1.8149	-0.0010278	566.3388260909321	134.77	0.29382	134.77	134.61	134.9	0					9	6	2	0	0	0	0.026551	1	15674	15674		3.4087	3.0682	1	210600	+		51114	25340	42303	42334	55430	55430					0.1793827521307776
RRRRSRWLRH	10	Unmodified	_RRRRSRWLRH_					0	0	0			REV__ENST00000389561.6_1_12:132551999-132562003:+|nuORF	REV__ENST00000389561.6_1_12:132551999-132562003:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3188781738281	3	493.631126	1477.87155	0.11721	5.7856E-05	-0.90585	-0.00044716	-0.78865	-0.0003893	493.6312364847593	104.33	0.15643	102.89	102.81	102.97	-1.4347					4	2	2	0	0	0	0.027503	1	7270	7270		7.0187	0.69781	1	6905.7	+		51115	25228	42304	42335	55431	55431					0.1517271489919949
RRRRSTWL	8	Unmodified	_RRRRSTWL_					0	0	0			REV__ENST00000421285.3_1_15:72957287-72958024:+|nuORF	REV__ENST00000421285.3_1_15:72957287-72958024:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.76904296875	2	565.836323	1129.65809	-0.42073	-0.00023806	-1.0699	-0.00060537	-1.4906	-0.00084343	565.8356786511139	25.918	0.29843	25.918	25.793	26.092	0					6	5	2	0	0	0	0.028476	1	642	642		26.796	0	1	32144	+		51116	25602	42305	42336	55432	55432					0.09844989399653059
RRRRVPPKF	9	Unmodified	_RRRRVPPKF_					0	0	0			REV__ENST00000371953.7_1_10:89623706-89624018:+|nuORF	REV__ENST00000371953.7_1_10:89623706-89624018:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.557373046875	3	404.591386	1210.75233	0.49043	0.00019842	0.6522	0.00026387	1.1426	0.0004623	404.59176242519186	42.133	0.21757	42.133	41.982	42.199	0					7	4	2	0	0	0	0.027462	1	2669	2669		40.778	22.247	1	24672	+		51117	24994	42306	42337	55433	55433					0.15538128221760417
RRRRVVPE	8	Unmodified	_RRRRVVPE_					0	0	0		nc|ENSG00000164050|O43157-2|PLXNB1;ENSG00000164050|ENST00000296440|PLXNB1	nc|ENSG00000164050|O43157-2|PLXNB1	nc|ENSG00000164050|O43157-2|PLXNB1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.2800903320312	2	534.330873	1066.64719	-1.6274	-0.00086959	2.6365	0.0014088	1.0091	0.00053918	534.3321124832748	73.852	0.758	70.516	70.28	71.038	-3.3363					22	15	2	0	0	0	0.028476	1	5741	5741		31.955	0	1	63549			51118	6396	42307	42338	55434	55434					0.116535870253756
RRRRWRGWLLF	11	Unmodified	_RRRRWRGWLLF_					0	0	0		sp|Q6SW34|UL116_HCMVMUncharacterizedproteinUL116OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL116PE=3SV=1;sp|P16833|UL116_HCMVAUncharacterizedproteinUL116OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL116PE=1SV=2	sp|Q6SW34|UL116_HCMVMUncharacterizedproteinUL116OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL116PE=3SV=1	sp|Q6SW34|UL116_HCMVMUncharacterizedproteinUL116OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL116PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.2916259765625	3	534.651527	1600.93275	1.2294	0.00065731	0.85663	0.000458	2.0861	0.0011153	534.6517217680113	123.52	0.46274	123.52	123.23	123.69	0					15	9	2	0	0	0	0.026534	1	14230	14230		3.2113	2.8991	1	101370			51119	32903	42308	42339	55435	55435					0.15632226878619804
RRRRWRRRRRR	11	Unmodified	_RRRRWRRRRRR_					0	0	0		ENST00000510148.1_1_5:179921418-179921547:+|nuORF	ENST00000510148.1_1_5:179921418-179921547:+|nuORF;REV__ENST00000510148.1_1_5:179921418-179921547:+|nuORF	REV__ENST00000510148.1_1_5:179921418-179921547:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	442.2294921875	4	442.282523	1765.10099	0.31201	0.000138	-1.0667	-0.00047178	-0.75468	-0.00033378	442.53249906399014	34.965	0.28468	34.965	34.864	35.149	0					7	5	2	0	0	0	0.02653	1	1736	1736		6.3209	0	1	23722			51120	12968;26935	42309	42340	55436	55436					0.24904146635617508
RRRRYRRYHNR	11	Unmodified	_RRRRYRRYHNR_					0	0	0			REV__YBX1|p.P149R|1|0.16|ENSG00000065978|chr1:42696733-42696733|C/G|missense_variant	REV__YBX1|p.P149R|1|0.16|ENSG00000065978|chr1:42696733-42696733|C/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	422.7433166503906	4	422.993986	1687.94684	-1.1843	-0.00050096	1.2171	0.00051484	0.032809	1.3878E-05	423.2453072617144	45.61	0.524	42.571	42.334	42.858	-3.0385					18	9	3	0	0	0	0.026562	1	2345	2345		0	0	1	66688	+		51121	32761	42310	42341	55437	55437					0.13038272359654002
RRRSGSILI	9	Unmodified	_RRRSGSILI_					0	0	0			REV__nc|ENSG00000162843|B1ANS9-2|WDR64	REV__nc|ENSG00000162843|B1ANS9-2|WDR64	MULTI-MSMS	OvCa9_classI_Rep2	2	529.3345947265625	2	529.333082	1056.65161	-0.97175	-0.00051438	3.7487	0.0019843	2.777	0.0014699	529.334637771083	122.14	1.1361	121.93	121.67	122.81	-0.21803					50	22	3	0	0	0	0.42676	1	11844	11844		49.442	6.5773	1	98924	+		51122	20784	42311	42342	55438	55438					0.12555051448293852
RRRSLRQK	8	Unmodified	_RRRSLRQK_					0	0	0			REV__nc|ENSG00000184792|Q969R2-5|OSBP2	REV__nc|ENSG00000184792|Q969R2-5|OSBP2	MULTI-MSMS	OvCa9_classI_Rep2	2	550.3502197265625	2	550.349597	1098.68464	0.35657	0.00019624	1.9041	0.0010479	2.2607	0.0012442	550.3505114476876	31.822	1.2363	29.112	28.789	30.025	-2.7097					67	24	4	0	0	0	0.64371	1	1031	1031		54.776	5.3348	1	380910	+		51123	22450	42312	42343	55439	55439					0.1392467829098223
RRRSPRHCRGR	11	Unmodified	_RRRSPRHCRGR_					0	0	0			REV__ENST00000369214.2_1_6:100062108-100062660:+|nuORF	REV__ENST00000369214.2_1_6:100062108-100062660:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	479.6024169921875	3	479.604471	1435.79158	-5.1747	-0.0024818	3.8339	0.0018387	-1.3408	-0.00064305	479.6061020578771	161.6	0.9082	161.38	161.14	162.05	-0.22696					38	17	3	0	0	0	0.72528	1	16466	16466		11.932	1.8285	1	49518	+		51124	24934	42313	42344	55440	55440					0.09111905233680773
RRRTAARPWL	10	Unmodified	_RRRTAARPWL_					0	0	0		ENST00000481323.1_1_20:17948856-17949358:-|nuORF;ENST00000486039.1_1_20:17948856-17949322:-|nuORF	ENST00000481323.1_1_20:17948856-17949358:-|nuORF	ENST00000481323.1_1_20:17948856-17949358:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8811645507812	2	641.883804	1281.75306	-3.6311	-0.0023307	1.755	0.0011265	-1.8761	-0.0012042	641.8847801872174	153.39	4.0845	151.94	150.68	154.77	-1.4516					420	106	6	0	0	0	0.7759	1	15435	15435		21.96	1.013	1	809780			51125	12544	42314	42345	55441	55441					0.1234492287080684
RRRTLGLRREE	11	Unmodified	_RRRTLGLRREE_					0	0	0		tr|A0A553SLL6|A0A553SLL6_NIACIXREfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_20740PE=4SV=1	tr|A0A553SLL6|A0A553SLL6_NIACIXREfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_20740PE=4SV=1	tr|A0A553SLL6|A0A553SLL6_NIACIXREfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_20740PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	481.2828369140625	3	481.286802	1440.83858	-6.6786	-0.0032143	-0.11204	-5.3925E-05	-6.7906	-0.0032682	481.2868612614486	161.01	3.7232	159.65	158.49	162.21	-1.3523					206	77	3	0	0	0	0.72524	1	14010	14010		12.433	0	1	127690			51126	33740	42315	42346	55442	55442					0.1357904326582684
RRRTRRMRRRG	11	Unmodified	_RRRTRRMRRRG_					0	0	0			REV__ENST00000423021.2_1_9:5112335-5112581:+|nuORF	REV__ENST00000423021.2_1_9:5112335-5112581:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3114624023438	3	519.650303	1555.92908	0.20276	0.00010536	2.0461	0.0010633	2.2489	0.0011686	519.9871212881018	84.19	0.18224	81.527	81.412	81.594	-2.6629					5	3	2	0	0	0	0.026488	1	7033	7033		10.104	6.021	1	19270	+		51127	25627	42316	42347	55443	55443					0.1733523383309148
RRRWLKMLAR	10	Unmodified	_RRRWLKMLAR_					0	0	0			REV__ENSG00000279000|ENST00000641238|OR10A6	REV__ENSG00000279000|ENST00000641238|OR10A6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.7718200683594	3	462.618947	1384.83501	-0.58918	-0.00027257	3.6354	0.0016818	3.0462	0.0014092	462.6207162242814	39.258	0.69513	36.332	36.146	36.841	-2.9264					23	13	3	0	0	0	0.027349	1	1625	1625		10.587	0	1	16743	+		51128	23649	42317	42348	55444	55444					0.15798701958283345
RRRWLLSLWRR	11	Unmodified	_RRRWLLSLWRR_					0	0	0		ENST00000531211.1_1_8:70772071-70772629:-|nuORF	ENST00000531211.1_1_8:70772071-70772629:-|nuORF	ENST00000531211.1_1_8:70772071-70772629:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.802490234375	3	533.326932	1596.95897	-1.7678	-0.00094283	0.72192	0.00038502	-1.0459	-0.00055781	533.3270924556225	46.043	0.7825	42.97	42.718	43.501	-3.0724					22	14	3	0	0	0	0.026551	1	2444	2444		3.4087	0	1	19606			51129	13302	42318	42349	55445	55445					0.18436496050117057
RRRWWWRRWRA	11	Unmodified	_RRRWWWRRWRA_					0	0	0			REV__ENST00000395136.6_2_1:70687096-70687432:+|nuORF	REV__ENST00000395136.6_2_1:70687096-70687432:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	591.8640747070312	3	590.997809	1769.9716	0.51375	0.00030363	-4.4843	-0.0026502	-3.9706	-0.0023466	590.9951480776525	64.745	0.60543	61.752	61.546	62.151	-2.9933					17	11	2	0	0	0	0.026505	1	2580	2580		5.6988	2.4875	1	17041	+		51130	25308	42319	42350	55446	55446					0.11740952232980817
RRSDRQQFL	9	Unmodified	_RRSDRQQFL_					0	0	0		nc|ENSG00000198363|Q12797-10|ASPH;ENSG00000198363|ENST00000379454|ASPH	nc|ENSG00000198363|Q12797-10|ASPH	nc|ENSG00000198363|Q12797-10|ASPH	MULTI-MSMS	OvCa99_classI_Rep5	1	402.5547180175781	3	402.554777	1204.6425	0.65379	0.00026319	-0.81808	-0.00032932	-0.16428	-6.6132E-05	402.5544892313041	37.554	1.1886	37.554	37.251	38.44	0					69	25	6	0	0	0	0.48324	1	2057	2057		35.152	0	1	4398100			51131	8811	42320	42351	55447	55447					0.04836658091949175
RRSFQRPRARR	11	Unmodified	_RRSFQRPRARR_					0	0	0		ENST00000342584.3_1_5:473081-473207:-|nuORF	ENST00000342584.3_1_5:473081-473207:-|nuORF	ENST00000342584.3_1_5:473081-473207:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	495.95697021484375	3	495.962653	1484.86613	-4.8163	-0.0023887	-3.2411	-0.0016075	-8.0574	-0.0039962	495.96094978154576	162.14	1.4092	161.91	160.94	162.35	-0.22696					77	27	3	0	0	0	0.72579	1	16467	16467		5.1424	0.25623	1	83644			51132	10582	42321	42352	55448	55448					0.14308991316738684
RRSFQRPRARR	11	Unmodified	_RRSFQRPRARR_					0	0	0		ENST00000342584.3_1_5:473081-473207:-|nuORF	ENST00000342584.3_1_5:473081-473207:-|nuORF	ENST00000342584.3_1_5:473081-473207:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	495.95855712890625	3	495.962653	1484.86613	-6.9468	-0.0034453	-0.98348	-0.00048777	-7.9302	-0.0039331	495.96210445138047	163.05	2.2058	161.66	160.17	162.38	-1.3926					163	48	5	0	0	0	0.72469	2	14220	14220;14251		19.627	4.9333	1	227040			51133	10582	42321	42352	55449;55450	55449					0.14308991316738684
RRSFQRPRARR	11	Unmodified	_RRSFQRPRARR_					0	0	0		ENST00000342584.3_1_5:473081-473207:-|nuORF	ENST00000342584.3_1_5:473081-473207:-|nuORF	ENST00000342584.3_1_5:473081-473207:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.9584655761719	3	495.962653	1484.86613	-6.4865	-0.003217	-1.4301	-0.00070929	-7.9166	-0.0039263	495.96187478588956	163.63	1.693	161.99	160.63	162.32	-1.6336					149	48	4	0	0	0	0.72545	1	16141	16141		9.6461	1.2389	1	106460			51134	10582	42321	42352	55451	55451					0.14308991316738684
RRSHPARLR	9	Unmodified	_RRSHPARLR_					0	0	0			REV__ENST00000342854.9_2_5:133450446-133450680:+|nuORF	REV__ENST00000342854.9_2_5:133450446-133450680:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	574.8475341796875	2	574.847222	1147.67989	-0.79965	-0.00045968	0.8496	0.00048839	0.049942	2.8709E-05	574.8475519868417	25.218	0.50206	25.218	25.042	25.544	0					24	9	4	0	0	0	0.69123	1	563	563		20.947	1.8434	1	237320	+		51135	24655	42322	42353	55452	55452					0.11195794148193272
RRSLESPI	8	Unmodified	_RRSLESPI_					0	0	0			REV__ENST00000525599.1_1_1:46088625-46089102:-|nuORF	REV__ENST00000525599.1_1_1:46088625-46089102:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.2804870605469	2	479.277441	956.540328	1.2379	0.0005933	2.8882	0.0013843	4.1261	0.0019776	479.2787787537371	96.937	2.2657	94.512	93.76	96.025	-2.4256					110	44	4	0	0	0	0.48084	1	8613	8613		79.451	5.4763	1	2968100	+		51136	26503	42323	42354	55453	55453					0.06031992020314192
RRSPCKMRLL	10	Unmodified	_RRSPCKMRLL_					0	0	0		ENSG00000004848|ENST00000379044|ARX	ENSG00000004848|ENST00000379044|ARX	ENSG00000004848|ENST00000379044|ARX	MULTI-SECPEP	OvCa99_classI_Rep5	1	629.7609252929688	2	630.363002	1258.71145	3.0314	0.0019109	0.60197	0.00037946	3.6334	0.0022904	630.3634504075217	90.298	0.63676	90.298	90.02	90.656	0					26	15	3	0	0	0	0.02717	1	9649	9649		30.318	11.993	1	407470			51137	835	42324	42355	55454	55454					0.09244282795657455
RRSPFLQVF	9	Unmodified	_RRSPFLQVF_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B;SEC23B|p.N596Lfs*20|1|0.21|ENSG00000101310|chr20:18548647-18548648|-/TT|frameshift_variant	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	OvCa99_classI_Rep5	1	575.33154296875	2	575.330008	1148.64546	1.8525	0.0010658	0.33537	0.00019295	2.1879	0.0012588	575.3301096710104	92.825	0.83313	92.825	92.472	93.305	0					62	19	4	0	0	0	0.35444	1	10031	10031		56.721	12.604	1	5663800			51138	2163	42325	42356	55455	55455					0.07708533216759861
RRSPGRRRH	9	Unmodified	_RRSPGRRRH_					0	0	0		ENST00000437621.6_1_7:1626575-1627631:+|nuORF;nc|ENSG00000230487|Q96PY0|PSMG3-AS1	ENST00000437621.6_1_7:1626575-1627631:+|nuORF	ENST00000437621.6_1_7:1626575-1627631:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3423461914062	2	589.34792	1176.68129	-4.3129	-0.0025418	-4.2429	-0.0025005	-8.5557	-0.0050423	589.3453728975387	144.79	3.9151	143.81	141.71	145.63	-0.97299					242	78	5	0	0	0	0.64427	1	12115	12115		26.693	0	1	192050			51139	11887	42326	42357	55456	55456					0.10001428236978427
RRSRPPRLT	9	Unmodified	_RRSRPPRLT_					0	0	0		AluY_dup76799|chr14:19068411-19068703:-|1.357001481976941|0.0837437417755778|4.02|409.0|2|1|sense	AluY_dup76799|chr14:19068411-19068703:-|1.357001481976941|0.0837437417755778|4.02|409.0|2|1|sense	AluY_dup76799|chr14:19068411-19068703:-|1.357001481976941|0.0837437417755778|4.02|409.0|2|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2485961914062	2	569.84943	1137.68431	-0.13071	-7.4488E-05	2.8193	0.0016066	2.6886	0.0015321	569.85090555737	30.317	0.29666	30.317	30.186	30.483	0					8	5	2	0	0	0	0.027462	1	1146	1146		16.473	0	1	18139			51140	82	42327	42358	55457	55457					0.12097258571111524
RRSSRSAATE	10	Unmodified	_RRSSRSAATE_					0	0	0			REV__ENST00000339824.6_2_12:118406619-118406781:-|nuORF	REV__ENST00000339824.6_2_12:118406619-118406781:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.7691040039062	2	560.794518	1119.57448	-0.15774	-8.8458E-05	-3.1599	-0.0017721	-3.3177	-0.0018605	560.7927866379886	59.411	0.3051	59.411	59.228	59.533	0					13	7	2	0	0	0	0.026867	1	5114	5114		51.193	23.31	1	398190	+		51141	24618	42328	42359	55458	55458					0.01947788441270859
RRSSSHQPSR	10	Unmodified	_RRSSSHQPSR_					0	0	0		ENST00000314888.9_1_9:35698396-35698438:-|nuORF	ENST00000314888.9_1_9:35698396-35698438:-|nuORF	ENST00000314888.9_1_9:35698396-35698438:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	599.3116455078125	2	599.313409	1196.61226	-1.4774	-0.0008854	-1.144	-0.00068563	-2.6214	-0.001571	599.3125920502436	68.519	1.8365	65.899	65.229	67.066	-2.6203					106	36	5	0	0	0	0.33877	1	5395	5395		76.17	0	1	554290			51142	10327	42329	42360	55459	55459					0.021822994267495233
RRTASTPLLP	10	Unmodified	_RRTASTPLLP_					0	0	0			REV__ENST00000564421.1_1_16:89662218-89663026:+|nuORF	REV__ENST00000564421.1_1_16:89662218-89663026:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	556.3327026367188	2	556.332747	1110.65094	0.19549	0.00010876	-0.020928	-1.1643E-05	0.17456	9.7113E-05	556.3324974852751	69.386	1.1434	66.572	66.261	67.405	-2.8143					67	22	4	0	0	0	0.45822	1	3098	3098		60.118	5.3419	1	473980	+		51143	27667	42330	42361	55460	55460					0.10004212008584545
RRTETVQKL	9	Unmodified	_RRTETVQKL_					0	0	0		ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	ENSG00000213719|ENST00000375784|CLIC1	MULTI-MSMS	OvCa99_classI_Rep5	1	565.836181640625	2	565.835654	1129.65676	0.32553	0.0001842	-2.0963	-0.0011862	-1.7708	-0.001002	565.8347307645225	31.149	1.6226	31.149	30.93	32.553	0					113	32	6	0	0	0	0.44248	1	1294	1294		47.96	12.341	1	29421000			51144	9142	42331	42362	55461	55461					0.0971131052021974
RRTFKYIPL	9	Unmodified	_RRTFKYIPL_					0	0	0		tr|A0A7D6VP23|A0A7D6VP23_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14975PE=4SV=1	tr|A0A7D6VP23|A0A7D6VP23_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14975PE=4SV=1	tr|A0A7D6VP23|A0A7D6VP23_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14975PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	597.357666015625	2	597.361308	1192.70806	-5.0217	-0.0029997	0.45711	0.00027306	-4.5646	-0.0027267	597.3613502692024	157	0.93945	156.78	156.54	157.48	-0.22696					63	26	4	0	0	0	0.71475	1	15981	15981		12.959	0.75233	1	80526			51145	34745	42332	42363	55462	55462					0.11941679284950624
RRTFKYIPL	9	Unmodified	_RRTFKYIPL_					0	0	0		tr|A0A7D6VP23|A0A7D6VP23_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14975PE=4SV=1	tr|A0A7D6VP23|A0A7D6VP23_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14975PE=4SV=1	tr|A0A7D6VP23|A0A7D6VP23_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14975PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.3580932617188	2	597.361308	1192.70806	-4.9941	-0.0029833	0.34798	0.00020787	-4.6461	-0.0027754	597.361356414137	157.6	0.96988	156.05	155.73	156.7	-1.545					62	25	3	0	0	0	0.68424	1	15615	15615		21.96	2.8564	1	81979			51146	34745	42332	42363	55463	55463					0.11941679284950624
RRTGLVPSA	9	Unmodified	_RRTGLVPSA_					0	0	0			REV__ENST00000278071.6_1_10:106073930-106074131:-|nuORF	REV__ENST00000278071.6_1_10:106073930-106074131:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	478.7850646972656	2	478.785433	955.556313	-3.0173	-0.0014446	2.9044	0.0013906	-0.11287	-5.4041E-05	478.78669233564773	146.16	1.5937	145.21	144.8	146.39	-0.95947					82	31	4	0	0	0	0.56889	1	12263	12263		35.618	0	1	384210	+		51147	24107	42333	42364	55464	55464					0.07675698257230579
RRTGWRRRRRR	11	Unmodified	_RRTGWRRRRRR_					0	0	0		nc|ENSG00000149177|Q12913-3|PTPRJ	nc|ENSG00000149177|Q12913-3|PTPRJ	nc|ENSG00000149177|Q12913-3|PTPRJ	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.8010864257812	3	537.996579	1610.96791	-1.3026	-0.00070079	-3.0417	-0.0016364	-4.3443	-0.0023372	537.9951868409912	32.639	0.34601	29.929	29.729	30.075	-2.7097					9	6	2	0	0	0	0.026551	1	1081	1081		1.4188	1.0473	1	12250			51148	15084	42334	42365	55465	55465					0.1868628245911168
RRTLAHGR	8	Unmodified	_RRTLAHGR_					0	0	0			REV__ENSG00000125378|ENST00000245451|BMP4	REV__ENSG00000125378|ENST00000245451|BMP4	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.72564697265625	2	483.788841	965.56313	-0.42144	-0.00020389	2.6936	0.0013031	2.2722	0.0010993	483.7901264730666	38.826	0.3531	38.826	38.619	38.972	0					10	7	2	0	0	0	0.028476	1	2252	2252		31.955	0	1	36613	+		51149	18721	42335	42366	55466	55466					0.07897055928458485
RRTLHLSKR	9	Unmodified	_RRTLHLSKR_					0	0	0		ENST00000355114.9_1_19:36685217-36736418:-|nuORF	ENST00000355114.9_1_19:36685217-36736418:-|nuORF	ENST00000355114.9_1_19:36685217-36736418:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8589477539062	2	583.86508	1165.71561	-6.9004	-0.0040289	-4.0278	-0.0023517	-10.928	-0.0063806	583.8626216517176	154.95	1.1831	153.88	153.56	154.74	-1.073					81	29	4	0	0	0	0.64427	2	13303	13303;13308		26.693	1.1189	1	200380			51150	10674	42336	42367	55467;55468	55467					0.13937831605221618
RRTLQTLEIQL	11	Unmodified	_RRTLQTLEIQL_					0	0	0		ENSG00000173908|ENST00000306658|KRT28;CON__Q7Z3Y7	ENSG00000173908|ENST00000306658|KRT28	ENSG00000173908|ENST00000306658|KRT28	MSMS	OvCa9_classI_Rep4_	4	457.60833740234375	3	457.608659	1369.80415	NaN	NaN	NaN	NaN	NaN	NaN	NaN	157.99	1	156.4	155.9	156.9	-1.5858								0	0	0	0.19474	1	15622	15622		16.53	4.5975	1			+	51151	657	42337	42368	55469	55469					0.13403782334376046
RRTLVGPN	8	Unmodified	_RRTLVGPN_					0	0	0			REV__ENST00000252840.10_1_19:7069531-7069681:+|nuORF	REV__ENST00000252840.10_1_19:7069531-7069681:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	456.7721252441406	2	456.772326	911.530098	-0.55209	-0.00025218	0.40157	0.00018343	-0.15052	-6.8753E-05	456.77237766888294	142.31	1.8774	142.08	141.37	143.25	-0.22697					97	37	4	0	0	0	0.75241	1	14241	14241		25.45	1.2474	1	225920	+		51152	23871	42338	42369	55470	55470					0.07079429085752054
RRTRGNVV	8	Unmodified	_RRTRGNVV_					0	0	0			REV__ENSG00000218336|ENST00000511685|TENM3	REV__ENSG00000218336|ENST00000511685|TENM3	MULTI-MSMS	OvCa9_classI_Rep2	2	479.28839111328125	2	479.288674	956.562795	1.7631	0.00084502	-1.8615	-0.0008922	-0.098445	-4.7184E-05	479.2876787398958	28.181	0.755	25.471	25.294	26.049	-2.7097					33	15	3	0	0	0	0.62474	1	555	555		58.782	8.7574	1	110940	+		51153	23328	42339	42370	55471	55471					0.08277636208606509
RRTRKKRNEKS	11	Unmodified	_RRTRKKRNEKS_					0	0	0			REV__tr|A0A553SQJ9|A0A553SQJ9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07775PE=4SV=1	REV__tr|A0A553SQJ9|A0A553SQJ9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07775PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.9589538574219	3	486.962318	1457.86513	-7.2825	-0.0035463	0.33205	0.0001617	-6.9504	-0.0033846	486.9623381995862	161.08	3.4384	159.71	158.52	161.96	-1.3692					219	70	4	0	0	0	0.72531	1	14126	14126		11.455	2.6553	1	133400	+		51154	30639	42340	42371	55472	55472					0.1545073215716002
RRTRRQSNG	9	Unmodified	_RRTRRQSNG_					0	0	0			REV__ENST00000245923.8_1_19:45998158-46000175:-|nuORF	REV__ENST00000245923.8_1_19:45998158-46000175:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.8355102539062	2	565.816119	1129.61768	0.32224	0.00018233	2.8513	0.0016133	3.1735	0.0017956	565.8187324391129	31.158	0.48005	31.158	30.881	31.361	0					10	6	2	0	0	0	0.02744	1	1247	1247		62.107	3.8775	1	196440	+		51155	23838	42341	42372	55473	55473					0.05806023009222372
RRTSVRLVC	9	Unmodified	_RRTSVRLVC_					0	0	0			REV__ENST00000250405.9_2_14:23777280-23778100:+|nuORF	REV__ENST00000250405.9_2_14:23777280-23778100:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3170776367188	2	545.319117	1088.62368	-2.8527	-0.0015556	-1.5958	-0.00087021	-4.4485	-0.0024258	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.56889	1	11754	11754		35.618	4.0885	1	337600	+		51156	23858	42342	42373	55474	55474					0.08291405196519008
RRVCVCFIV	9	Unmodified	_RRVCVCFIV_					0	0	0		ENSG00000181785|ENST00000641320|OR5AS1	ENSG00000181785|ENST00000641320|OR5AS1	ENSG00000181785|ENST00000641320|OR5AS1	MULTI-MSMS	OvCa99_classI_Rep5	1	547.8023681640625	2	547.801714	1093.58888	0.084644	4.6368E-05	-0.48483	-0.00026559	-0.40019	-0.00021922	547.8015077520115	46.176	1.4001	46.176	45.979	47.379	0					95	31	5	0	0	0	0.42057	1	3234	3234		50.025	2.3672	1	11785000			51157	7953	42343	42374	55475	55475					0.045824460642052145
RRVELSRGG	9	Unmodified	_RRVELSRGG_					0	0	0			REV__AluSz_dup96494|chr19:50996455-50996749:+|1.1822451371104858|0.105733417338726|3.48|423.0|7|3|sense	REV__AluSz_dup96494|chr19:50996455-50996749:+|1.1822451371104858|0.105733417338726|3.48|423.0|7|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.7957153320312	2	515.299239	1028.58392	-0.88658	-0.00045685	-3.1233	-0.0016095	-4.0099	-0.0020663	515.2975155609184	37.598	0.8266	37.598	37.114	37.94	0					31	17	3	0	0	0	0.027433	1	2070	2070		64.207	12.872	1	846010	+		51158	15618	42344	42375	55476	55476					0.07077601517471521
RRVFCDIPP	9	Unmodified	_RRVFCDIPP_					0	0	0		ENSG00000181718|ENST00000641661|OR5T2;nc|ENSG00000181718|Q8NGG2|OR5T2	ENSG00000181718|ENST00000641661|OR5T2	ENSG00000181718|ENST00000641661|OR5T2	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3114013671875	2	551.794943	1101.57533	1.1829	0.00065273	-3.4896	-0.0019255	-2.3067	-0.0012728	551.7937454678047	146.66	0.4415	146.66	146.52	146.96	0					10	8	2	0	0	0	0.027462	1	17188	17188		23.042	13.337	1	21159			51159	7948	42345	42376	55477	55477					0.028609115566268883
RRVKKRRKPK	10	Unmodified	_RRVKKRRKPK_					0	0	0			REV__ENSG00000135392|ENST00000678005|DNAJC14	REV__ENSG00000135392|ENST00000678005|DNAJC14	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.7622985839844	3	451.312623	1350.91604	-0.062545	-2.8227E-05	-3.8666	-0.0017451	-3.9292	-0.0017733	451.31147201917435	58.943	0.1947	58.943	58.852	59.046	0					7	4	2	0	0	0	0.027446	1	5050	5050		6.6596	3.6336	1	316330	+		51160	19282	42346	42377	55478	55478					0.2546172599265901
RRVLAHFRNL	10	Unmodified	_RRVLAHFRNL_					0	0	0		ENST00000567471.1_1_16:2030682-2034179:-|nuORF;ENST00000354249.8_2_16:2030682-2031466:-|nuORF	ENST00000567471.1_1_16:2030682-2034179:-|nuORF	ENST00000567471.1_1_16:2030682-2034179:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.383056640625	2	641.38618	1280.75781	-6.1302	-0.0039319	3.8655	0.0024793	-2.2647	-0.0014526	641.3884310920467	161.98	1.0437	160.36	160.01	161.05	-1.6239					61	26	4	0	0	0	0.81992	1	15993	15993		16.473	0.83134	1	67910			51161	13862	42347	42378	55479	55479					0.12865807013599806
RRVLRLLQG	9	Unmodified	_RRVLRLLQG_					0	0	0		ENSG00000118369|ENST00000529308|USP35	ENSG00000118369|ENST00000529308|USP35	ENSG00000118369|ENST00000529308|USP35	MULTI-MSMS	OvCa99_classI_Rep5	1	555.8663940429688	2	555.864549	1109.71454	-0.27145	-0.00015089	-0.030116	-1.674E-05	-0.30157	-0.00016763	555.8644937340955	54.744	0.89226	54.744	54.422	55.315	0					54	20	4	0	0	0	0.56889	1	4451	4451		35.618	6.4687	1	4294400			51162	3304	42348	42379	55480	55480					0.16407617236313854
RRVLTLKYK	9	Unmodified	_RRVLTLKYK_					0	0	0		tr|A0A553SRE7|A0A553SRE7_NIACIbeta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_00775PE=4SV=1	tr|A0A553SRE7|A0A553SRE7_NIACIbeta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_00775PE=4SV=1	tr|A0A553SRE7|A0A553SRE7_NIACIbeta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_00775PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	588.8824462890625	2	588.882407	1175.75026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	25.103	1	25.103	24.603	25.603	0								0	0	0	0.23988	1	529	529		19.997	0.89325	1				51163	34254	42349	42380	55481	55481					0.16941654693300734
RRVNEFPT	8	Unmodified	_RRVNEFPT_					0	0	0			REV__tr|A0A7D7AGL9|A0A7D7AGL9_9CLOTPhosphoribosylformylglycinamidinesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09215PE=4SV=1	REV__tr|A0A7D7AGL9|A0A7D7AGL9_9CLOTPhosphoribosylformylglycinamidinesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09215PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.3053283691406	2	509.775065	1017.53558	1.543	0.00078658	-2.0929	-0.0010669	-0.54994	-0.00028034	509.77395306849434	87.883	0.28957	86.452	86.288	86.577	-1.4311					6	5	2	0	0	0	0.028476	1	7673	7673		42.396	0	1	5666.1	+		51164	32724	42350	42381	55482	55482					0.027511078775773967
RRVPSSVRL	9	Unmodified	_RRVPSSVRL_					0	0	0			REV__ENST00000550292.1_1_12:30948620-30949103:+|nuORF	REV__ENST00000550292.1_1_12:30948620-30949103:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.7052001953125	2	535.333082	1068.65161	0.08405	4.4995E-05	3.2623	0.0017464	3.3464	0.0017914	535.3346742671552	32.273	0.34852	32.273	32.105	32.453	0					15	6	3	0	0	0	0.027462	1	1402	1402		49.442	10.189	1	91125	+		51165	27470	42351	42382	55483	55483					0.12003051448277802
RRVRAAAQRE	10	Unmodified	_RRVRAAAQRE_					0	0	0		ENST00000450554.6_1_19:56166349-56166514:+|nuORF	ENST00000450554.6_1_19:56166349-56166514:+|nuORF	ENST00000450554.6_1_19:56166349-56166514:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	404.90606689453125	3	404.905921	1211.69593	0.69944	0.00028321	-0.45393	-0.0001838	0.24551	9.9409E-05	404.9056112980017	25.214	0.35062	25.214	25.042	25.392	0					16	6	4	0	0	0	0.73063	1	540	540		27.047	1.9213	1	123110			51166	12040	42352	42383	55484	55484					0.09855455594424711
RRVRRRKF	8	Unmodified	_RRVRRRKF_					0	0	0			REV__nc|ENSG00000203880|Q9NV79-3|PCMTD2	REV__nc|ENSG00000203880|Q9NV79-3|PCMTD2	MULTI-MSMS	OvCa99_classI_Rep5	1	587.3839111328125	2	587.381232	1172.74791	2.121	0.0012458	2.529	0.0014855	4.65	0.0027313	587.3826616659907	82.501	0.93349	82.501	82.101	83.035	0					62	21	4	0	0	0	0.7043	1	8538	8538		42.474	1.6963	1	2817200	+		51167	23118	42353	42384	55485	55485					0.1684466379888363
RRVTRRKKWFE	11	Unmodified	_RRVTRRKKWFE_					0	0	0			REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.2930908203125	3	521.311059	1560.91135	1.9222	0.0010021	2.8304	0.0014755	4.7526	0.0024776	521.3126288020305	89.033	0.51089	89.033	88.803	89.313	0					17	12	2	0	0	0	0.026534	1	9528	9528		6.001	0.58812	1	363520	+		51168	28871	42354	42385	55486	55486					0.15332797059272707
RRWGKRKNKPK	11	Unmodified	_RRWGKRKNKPK_					0	0	0		ENSG00000157557|ENST00000360938|ETS2;nc|ENSG00000134954|P14921-4|ETS1;nc|ENSG00000134954|P14921-2|ETS1;nc|ENSG00000134954|P14921|ETS1;ENSG00000134954|ENST00000392668|ETS1	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	OvCa99_classI_Rep5	1	485.3026428222656	3	485.304016	1452.89022	-0.39153	-0.00019001	-3.017	-0.0014641	-3.4085	-0.0016542	485.30265477000466	23.835	0.98853	23.835	23.597	24.586	0					57	19	5	0	0	0	0.7252	1	368	368		12.957	2.8536	1	1181200			51169	5900	42355	42386	55487	55487					0.18188831750376266
RRWLKKMA	8	Unmodified	_RRWLKKMA_					0	0	0			REV__ENSG00000237388|ENST00000446524|OR4A47	REV__ENSG00000237388|ENST00000446524|OR4A47	MULTI-MSMS	OvCa9_classI_Rep3	3	544.82470703125	2	544.829121	1087.64369	-5.7876	-0.0031532	-2.786	-0.0015179	-8.5735	-0.0046711	544.8275981477423	155.03	0.91966	153.96	153.65	154.57	-1.073					57	22	4	0	0	0	0.74679	1	13311	13311		28.254	6.2944	1	91973	+		51170	23418	42356	42387	55488	55488					0.10337200927142476
RRWMIRKRMRE	11	Unmodified	_RRWMIRKRMRE_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OvCa99_classI_Rep5	1	540.306884765625	3	539.973284	1616.89802	-0.38293	-0.00020677	0.93862	0.00050683	0.5557	0.00030006	539.9737251652641	42.687	0.51767	42.687	42.453	42.97	0					30	11	4	0	0	0	0.72511	1	2768	2768		14.086	0	1	511960			51171	1348	42357	42388	55489	55489					0.11424899683993317
RRWRPGSL	8	Unmodified	_RRWRPGSL_					0	0	0			REV__ENST00000608317.1_1_7:154795447-154795768:+|nuORF	REV__ENST00000608317.1_1_7:154795447-154795768:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	514.2984008789062	2	514.299042	1026.58353	-4.6194	-0.0023758	3.2107	0.0016513	-1.4087	-0.0007245	514.3006222329757	152.39	0.9877	151.42	151.04	152.03	-0.97299					50	19	4	0	0	0	0.7549	1	13010	13010		24.203	1.1603	1	117900	+		51172	28095	42358	42389	55490	55490					0.07130226588265032
RRWRQWRKMQK	11	Unmodified	_RRWRQWRKMQK_					0	0	0			REV__ENST00000216456.6_1_14:68126581-68129225:-|nuORF	REV__ENST00000216456.6_1_14:68126581-68129225:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.3051147460938	3	553.647677	1657.9212	0.287	0.0001589	4.4629	0.0024709	4.7499	0.0026298	553.650101545557	59.392	0.78721	56	55.755	56.542	-3.392					25	15	2	0	0	0	0.026497	1	3962	3962		9.6461	0.43434	1	53608	+		51173	23726	42359	42390	55491	55491					0.11855661792947103
RRWTQRRRRNS	11	Unmodified	_RRWTQRRRRNS_					0	0	0		ENST00000233468.4_1_2:24290678-24291201:-|nuORF	ENST00000233468.4_1_2:24290678-24291201:-|nuORF	ENST00000233468.4_1_2:24290678-24291201:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.769775390625	3	524.633195	1570.87776	-0.70675	-0.00037078	-3.6093	-0.0018936	-4.3161	-0.0022643	524.6311670363718	99.592	1.389	98.761	98.418	99.807	-0.83051					62	27	4	0	0	0	0.026383	1	9042	9042		12.957	6.6366	1	118560			51174	9730	42360	42391	55492	55492					0.11515188340058558
RRWYPWLQYPK	11	Unmodified	_RRWYPWLQYPK_					0	0	0		L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|10|1|sense	L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|10|1|sense	L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|10|1|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	531.6227416992188	3	531.62101	1591.8412	-0.21836	-0.00011609	0.88751	0.00047182	0.66915	0.00035573	531.62150385653	42.904	0.64744	42.904	42.665	43.312	0					50	14	5	0	0	0	0.7252	1	2788	2788		12.957	4.1582	1	2581800			51175	14780	42361	42392	55493	55493					0.06895498670792222
RRYGSIYTL	9	Unmodified	_RRYGSIYTL_					0	0	0		ENST00000494418.1_1_1:161068255-161069412:+|nuORF;ENST00000471613.1_1_1:161068499-161069114:+|nuORF;nc|ENSG00000162755|Q8NEP7-3|KLHDC9;nc|ENSG00000162755|Q8NEP7-2|KLHDC9;ENSG00000162755|ENST00000368011|KLHDC9	ENST00000494418.1_1_1:161068255-161069412:+|nuORF	ENST00000494418.1_1_1:161068255-161069412:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	564.8104248046875	2	564.811648	1127.60874	-2.1858	-0.0012346	0.12689	7.1666E-05	-2.0589	-0.0011629	564.8115908604212	146.02	1.2908	145.8	145.33	146.62	-0.22697					59	25	3	0	0	0	0.67509	1	14735	14735		23.042	0	1	117310			51176	6227	42362	42393	55494	55494					0.050042366001889604
RRYIRMYRFYS	11	Unmodified	_RRYIRMYRFYS_					0	0	0			REV__nc|ENSG00000179397|Q5SY80-3|CATSPERE	REV__nc|ENSG00000179397|Q5SY80-3|CATSPERE	MULTI-MSMS	OvCa99_classI_Rep5	1	537.619384765625	3	537.617272	1609.82999	-0.1427	-7.6716E-05	1.4893	0.00080069	1.3466	0.00072398	537.6177967736215	60.413	1.0914	60.413	60.153	61.245	0					88	25	5	0	0	0	0.70587	1	5267	5267		27.644	18.432	1	7591000	+		51177	22122	42363	42394	55495	55495					0.04946353305012963
RRYIRMYRFYS	11	Unmodified	_RRYIRMYRFYS_					0	0	0			REV__nc|ENSG00000179397|Q5SY80-3|CATSPERE	REV__nc|ENSG00000179397|Q5SY80-3|CATSPERE	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	537.617272	1609.82999	-0.97364	-0.00052344	1.5586	0.00083791	0.58492	0.00031446	537.6181878714482	63.816	0.62551	60.341	60.109	60.735	-3.475	-0.036123	3.7131E-05	NaN	27.644	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61212	+		51178	22122	42363	42394							0.04946353305012963
RRYLILPW	8	Unmodified	_RRYLILPW_					0	0	0			REV__ENST00000321680.10_1_6:147527107-147527200:+|nuORF	REV__ENST00000321680.10_1_6:147527107-147527200:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	558.8397827148438	2	558.837468	1115.66038	1.1066	0.00061842	3.8853	0.0021712	4.9919	0.0027897	558.8394771772328	30.588	0.88633	27.878	27.706	28.592	-2.7097					39	17	3	0	0	0	0.74679	1	871	871		28.254	0	1	114560	+		51179	24451	42364	42395	55496	55496					0.10718025084747751
RRYLLRRQLGQ	11	Unmodified	_RRYLLRRQLGQ_					0	0	0		nc|ENSG00000181085|Q8TD08-2|MAPK15;nc|ENSG00000181085|Q8TD08-3|MAPK15;ENSG00000181085|ENST00000338033|MAPK15	nc|ENSG00000181085|Q8TD08-2|MAPK15	nc|ENSG00000181085|Q8TD08-2|MAPK15	MULTI-MSMS	OvCa9_classI_Rep3	3	486.9585876464844	3	486.963659	1457.86915	-7.2824	-0.0035463	-2.4216	-0.0011792	-9.704	-0.0047255	486.9623381995862	161.08	3.4384	159.71	158.52	161.96	-1.3692					219	70	4	0	0	0	0.72545	1	13978	13978		9.6461	0	1	133400			51180	7918	42365	42396	55497	55497					0.15852821650901205
RRYRERRYGF	10	Unmodified	_RRYRERRYGF_					0	0	0		nc|ENSG00000117616|Q9BUV0-3|RSRP1;nc|ENSG00000117616|Q9BUV0-2|RSRP1;ENSG00000117616|ENST00000243189|RSRP1	nc|ENSG00000117616|Q9BUV0-3|RSRP1	nc|ENSG00000117616|Q9BUV0-3|RSRP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.8139343261719	3	486.932359	1457.77525	-0.022716	-1.1061E-05	-1.5721	-0.00076551	-1.5948	-0.00077657	486.93150008043233	58	1.0035	54.655	54.393	55.397	-3.3449					44	19	4	0	0	0	0.027062	1	3799	3799		40.058	18.278	1	143620			51181	3268	42366	42397	55498	55498					0.06467102548594994
RSAALRGP	8	Unmodified	_RSAALRGP_					0	0	0		ENST00000456989.6_1_17:38347644-38348502:+|nuORF	ENST00000456989.6_1_17:38347644-38348502:+|nuORF	ENST00000456989.6_1_17:38347644-38348502:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.90631103515625	2	414.245944	826.477334	1.1462	0.00047482	-0.55266	-0.00022894	0.59356	0.00024588	414.2454949122637	35.235	0.75004	32.386	32.139	32.889	-2.849					32	14	3	0	0	0	0.028476	1	1163	1163		24.519	16.288	1	58491			51182	12117	42367	42398	55499	55499					0.05715471022949714
RSAAREDD	8	Unmodified	_RSAAREDD_					0	0	0		ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	ENSG00000143819|ENST00000272167|EPHX1	MULTI-SECPEP	OvCa99_classI_Rep5	1	460.7818298339844	2	460.215037	918.415522	-0.29127	-0.00013405	0.68149	0.00031363	0.39022	0.00017958	460.2156787257303	43.245	0.37819	43.245	43.1	43.478	0					16	8	3	0	0	0	0.028476	1	2849	2849		10.265	0	1	173830			51183	5099	42368	42399	55500	55500					-0.04694925186868204
RSAATKIVFL	10	Unmodified	_RSAATKIVFL_					0	0	0		ENSG00000134815|ENST00000328771|DHX34	ENSG00000134815|ENST00000328771|DHX34	ENSG00000134815|ENST00000328771|DHX34	MULTI-MSMS	OvCa9_classI_Rep3	3	553.3385009765625	2	553.340041	1104.66553	-6.0893	-0.0033694	1.9384	0.0010726	-4.1508	-0.0022968	553.3412907390741	155.01	0.65959	153.94	153.69	154.35	-1.073					28	14	3	0	0	0	0.79917	1	13323	13323		19.104	0.77911	1	33019			51184	4333	42369	42400	55501	55501					0.11738284156695045
RSAEAQNFID	10	Unmodified	_RSAEAQNFID_					0	0	0		nc|ENSG00000166578|Q96DY2-3|IQCD;nc|ENSG00000166578|Q96DY2-2|IQCD;ENSG00000166578|ENST00000416617|IQCD	nc|ENSG00000166578|Q96DY2-3|IQCD	nc|ENSG00000166578|Q96DY2-3|IQCD	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.2781372070312	2	575.778002	1149.54145	1.527	0.0008792	1.3507	0.00077768	2.8776	0.0016569	576.2801206356828	126.44	1.1063	126.44	125.95	127.05	0					63	23	4	0	0	0	0.027033	1	14603	14603		41.427	14.734	1	370740			51185	6695	42370	42401	55502	55502					-0.027338384014456096
RSAEVTLEV	9	Unmodified	_RSAEVTLEV_					0	0	0		ENST00000480730.5_1_6:33272047-33272452:-|nuORF;nc|ENSG00000231925|O15533-4|TAPBP;nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;chr6:33308158-33313217|419|14.06|0.74|4.24|-|ENST00000475304|TAPBP,TAPBP;nc|ENSG00000231925|O15533-3|TAPBP	ENST00000480730.5_1_6:33272047-33272452:-|nuORF	ENST00000480730.5_1_6:33272047-33272452:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	502.27569580078125	2	502.274564	1002.53457	2.0275	0.0010184	0.54506	0.00027377	2.5726	0.0012922	502.2744146655743	76.555	1.3792	76.555	75.913	77.293	0					98	33	5	0	0	0	0.16264	2	7672	7672;7705		82.75	3.0379	1	11447000			51186	515	42371	42402	55503;55504	55503					0.03340848718016787
RSAEVTLEV	9	Unmodified	_RSAEVTLEV_					0	0	0		ENST00000480730.5_1_6:33272047-33272452:-|nuORF;nc|ENSG00000231925|O15533-4|TAPBP;nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;chr6:33308158-33313217|419|14.06|0.74|4.24|-|ENST00000475304|TAPBP,TAPBP;nc|ENSG00000231925|O15533-3|TAPBP	ENST00000480730.5_1_6:33272047-33272452:-|nuORF	ENST00000480730.5_1_6:33272047-33272452:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	502.27532958984375	2	502.274564	1002.53457	-0.51252	-0.00025743	0.022578	1.134E-05	-0.48994	-0.00024608	502.2744215963091	78.731	1.5525	76.378	75.998	77.551	-2.3527					73	30	4	0	0	0	0.10502	1	4209	4209		95.815	13.575	1	727880			51187	515	42371	42402	55505	55505					0.03340848718016787
RSAEVTLEV	9	Unmodified	_RSAEVTLEV_					0	0	0		ENST00000480730.5_1_6:33272047-33272452:-|nuORF;nc|ENSG00000231925|O15533-4|TAPBP;nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;chr6:33308158-33313217|419|14.06|0.74|4.24|-|ENST00000475304|TAPBP,TAPBP;nc|ENSG00000231925|O15533-3|TAPBP	ENST00000480730.5_1_6:33272047-33272452:-|nuORF	ENST00000480730.5_1_6:33272047-33272452:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.27642822265625	2	502.274564	1002.53457	-0.88603	-0.00044503	-0.11995	-6.0249E-05	-1.006	-0.00050528	502.2743814538115	79.525	1.6887	76.774	76.322	78.011	-2.7514					74	34	3	0	0	0	0.2077	1	6458	6458		75.043	3.1658	1	1032500			51188	515	42371	42402	55506	55506					0.03340848718016787
RSAEVTLEV	9	Unmodified	_RSAEVTLEV_					0	0	0		ENST00000480730.5_1_6:33272047-33272452:-|nuORF;nc|ENSG00000231925|O15533-4|TAPBP;nc|ENSG00000231925|O15533-2|TAPBP;ENSG00000231925|ENST00000434618|TAPBP;chr6:33308158-33313217|419|14.06|0.74|4.24|-|ENST00000475304|TAPBP,TAPBP;nc|ENSG00000231925|O15533-3|TAPBP	ENST00000480730.5_1_6:33272047-33272452:-|nuORF	ENST00000480730.5_1_6:33272047-33272452:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	502.274564	1002.53457	-0.54437	-0.00027343	-0.24524	-0.00012318	-0.78961	-0.0003966	502.274328790532	78.652	2.173	76.912	76.301	78.474	-1.7398	0.25734	-0.00018604	NaN	95.815	94	42	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299450			51189	515	42371	42402							0.03340848718016787
RSAGLPIEAL	10	Unmodified	_RSAGLPIEAL_					0	0	0		tr|A0A7D6ZF05|A0A7D6ZF05_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15900PE=4SV=1	tr|A0A7D6ZF05|A0A7D6ZF05_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15900PE=4SV=1	tr|A0A7D6ZF05|A0A7D6ZF05_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15900PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.94091796875	2	513.800749	1025.58694	-0.3994	-0.00020521	0.015224	7.8223E-06	-0.38418	-0.00019739	513.8005063328957	60.259	0.99832	60.259	59.647	60.646	0					41	24	2	0	0	0	0.026891	1	5282	5282		24.519	9.6543	1	638590			51190	35496	42372	42403	55507	55507					0.07517431851601941
RSAGPLLPPN	10	Unmodified	_RSAGPLLPPN_					0	0	0			REV__ENST00000332290.3_1_6:170102286-170102490:+|nuORF	REV__ENST00000332290.3_1_6:170102286-170102490:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.25787353515625	2	511.293091	1020.57163	-0.14876	-7.6059E-05	-1.2861	-0.0006576	-1.4349	-0.00073366	511.29226408343044	56.364	0.86926	56.364	56.135	57.004	0					45	20	3	0	0	0	0.026849	1	4660	4660		19.104	0	1	2123800	+		51191	24545	42373	42404	55508	55508					0.06216565054410239
RSAHAFSQL	9	Unmodified	_RSAHAFSQL_					0	0	0			REV__ENST00000504930.5_2_5:89770711-89781375:+|nuORF	REV__ENST00000504930.5_2_5:89770711-89781375:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	508.7692565917969	2	508.76724	1015.51993	1.5216	0.00077414	-0.97897	-0.00049807	0.54264	0.00027608	508.7669808363296	105.88	0.56826	105.88	105.62	106.18	0					24	12	3	0	0	0	0.3076	1	11912	11912		62.107	1.1355	1	576390	+		51192	26866	42374	42405	55509	55509					0.012788213605062992
RSAHAFSQL	9	Unmodified	_RSAHAFSQL_					0	0	0			REV__ENST00000504930.5_2_5:89770711-89781375:+|nuORF	REV__ENST00000504930.5_2_5:89770711-89781375:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	508.76724	1015.51993	0.041357	2.1041E-05	-2.5748	-0.00131	-2.5334	-0.0012889	508.7660788753806	107.22	0.85561	105.95	105.71	106.57	-1.267	0.0078316	-0.0020721	NaN	62.107	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45250	+		51193	26866	42374	42405							0.012788213605062992
RSAHAFSQL	9	Unmodified	_RSAHAFSQL_					0	0	0			REV__ENST00000504930.5_2_5:89770711-89781375:+|nuORF	REV__ENST00000504930.5_2_5:89770711-89781375:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	508.76724	1015.51993	-2.3554	-0.0011983	0.88379	0.00044965	-1.4716	-0.0007487	508.7676994498153	107.88	0.52366	106	105.74	106.26	-1.8785	0.059288	0.0014471	NaN	62.107	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33724	+		51194	26866	42374	42405							0.012788213605062992
RSAKPPRCT	9	Unmodified	_RSAKPPRCT_					0	0	0			REV__ENST00000454337.1_1_16:1697048-1706838:+|nuORF	REV__ENST00000454337.1_1_16:1697048-1706838:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.80853271484375	2	508.276918	1014.53928	-1.2281	-0.0006242	-2.0666	-0.0010504	-3.2947	-0.0016746	508.27527139368516	60.846	1.1595	58.075	57.606	58.766	-2.7702					31	21	2	0	0	0	0.027446	1	4487	4487		51.193	20.689	1	57419	+		51195	26000	42375	42406	55510	55510					0.032594543797586084
RSALASGKLH	10	Unmodified	_RSALASGKLH_					0	0	0			REV__ENST00000511154.5_1_19:54041514-54074864:+|nuORF	REV__ENST00000511154.5_1_19:54041514-54074864:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.3029174804688	2	520.30399	1038.59343	-2.1259	-0.0011061	1.9805	0.0010304	-0.14546	-7.5685E-05	520.3049655422371	49.989	1.4992	46.847	46.455	47.954	-3.1416					67	28	4	0	0	0	0.64697	1	2870	2870		36.447	0.82846	1	772500	+		51196	26954	42376	42407	55511	55511					0.07567369802995927
RSALATLTIL	10	Unmodified	_RSALATLTIL_					0	0	0		CELSR2-KIAA1324|1|fusion;ENSG00000143126|ENST00000271332|CELSR2	CELSR2-KIAA1324|1|fusion	CELSR2-KIAA1324|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	530.3060913085938	2	529.832049	1057.64954	-1.0392	-0.00055062	-1.8152	-0.00096173	-2.8544	-0.0015123	529.8313911111483	58.973	1.2832	56.193	55.689	56.973	-2.7801					42	24	4	0	0	0	0.02663	1	4277	4277		51.193	11.94	1	43814			51197	219	42377	42408	55512	55512					0.12302577919808755
RSALELTPS	9	Unmodified	_RSALELTPS_					0	0	0			REV__ENSG00000178695|ENST00000377474|KCTD12	REV__ENSG00000178695|ENST00000377474|KCTD12	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.3157653808594	2	487.269281	972.52401	-0.94539	-0.00046066	2.8145	0.0013714	1.8691	0.00091076	487.27027681946623	50.495	0.44427	47.701	47.531	47.975	-2.794					13	8	2	0	0	0	0.027448	1	3286	3286		35.618	0	1	7154.4	+		51198	22073	42378	42409	55513	55513					0.03664866063570571
RSALPTKTV	9	Unmodified	_RSALPTKTV_					0	0	0		ENSG00000273611|ENST00000617429|ZNHIT3;nc|ENSG00000273611|Q15649-2|ZNHIT3	ENSG00000273611|ENST00000617429|ZNHIT3	ENSG00000273611|ENST00000617429|ZNHIT3	MULTI-MSMS	OvCa99_classI_Rep5	1	486.7945556640625	2	486.795466	971.57638	-0.54338	-0.00026452	0.2101	0.00010227	-0.33329	-0.00016224	486.7955576444338	41.442	0.87295	41.442	41.195	42.068	0					49	19	3	0	0	0	0.14445	1	2578	2578		85.862	9.0877	1	4244300			51199	9558	42379	42410	55514	55514					0.08945449197176458
RSALRSPGQ	9	Unmodified	_RSALRSPGQ_					0	0	0		ENSG00000182223|ENST00000327939|ZAR1	ENSG00000182223|ENST00000327939|ZAR1	ENSG00000182223|ENST00000327939|ZAR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.2929382324219	2	486.27269	970.530826	-0.94681	-0.00046041	2.0597	0.0010016	1.1129	0.00054118	486.27338401921895	43.551	0.2161	43.551	43.435	43.651	0					7	4	2	0	0	0	0.027462	1	2873	2873		14.137	0	1	57581			51200	7983	42380	42411	55515	55515					0.044382237348031595
RSALSSVSF	9	Unmodified	_RSALSSVSF_					0	0	0			REV__ENST00000489343.5_1_3:132440828-132441221:+|nuORF	REV__ENST00000489343.5_1_3:132440828-132441221:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.9403991699219	2	477.256174	952.497795	-0.5383	-0.00025691	1.4481	0.0006911	0.90977	0.00043419	477.25627427609834	45.979	0.73267	42.906	42.561	43.294	-3.0724					27	13	3	0	0	0	0.027462	1	2417	2417		21.96	0	1	27558	+		51201	26638	42381	42412	55516	55516					0.019645968920940504
RSANAPPTSI	10	Unmodified	_RSANAPPTSI_					0	0	0		ENSG00000008226|ENST00000308059|DLEC1	ENSG00000008226|ENST00000308059|DLEC1	ENSG00000008226|ENST00000308059|DLEC1	MULTI-MSMS	OvCa9_classI_Rep3	3	507.2738342285156	2	507.272355	1012.53016	-0.32483	-0.00016478	4.3932	0.0022285	4.0684	0.0020638	507.2744775445949	108.1	1.1293	106.91	106.64	107.77	-1.1978					63	21	4	0	0	0	0.50999	1	7717	7717		52.937	1.744	1	500160			51202	914	42382	42413	55517	55517					0.024393842950985345
RSAPEKII	8	Unmodified	_RSAPEKII_					0	0	0		nc|ENSG00000212719|A8MQB3|LINC02693	nc|ENSG00000212719|A8MQB3|LINC02693	nc|ENSG00000212719|A8MQB3|LINC02693	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.766845703125	2	457.276909	912.539266	0.97344	0.00044513	2.65	0.0012118	3.6234	0.0016569	457.278217675945	37.409	0.14907	34.517	34.392	34.541	-2.8925					4	2	2	0	0	0	0.028476	1	1363	1363		27.882	0	1	25168			51203	15304	42383	42414	55518	55518					0.07949777651424483
RSAPELPEGIL	11	Unmodified	_RSAPELPEGIL_					0	0	0		ENSG00000008323|ENST00000684764|PLEKHG6;nc|ENSG00000008323|Q3KR16-2|PLEKHG6;nc|ENSG00000008323|Q3KR16-3|PLEKHG6	ENSG00000008323|ENST00000684764|PLEKHG6	ENSG00000008323|ENST00000684764|PLEKHG6	MULTI-MSMS	OvCa9_classI_Rep4_	4	591.3316040039062	2	591.32987	1180.64519	-0.68897	-0.00040741	0.57396	0.0003394	-0.11501	-6.8006E-05	591.3300967341441	120.75	0.97525	119.4	119.08	120.06	-1.3479					33	18	2	0	0	0	0.4646	1	11363	11363		56.434	6.8977	1	128850			51204	918	42384	42415	55519	55519					0.0620906870624367
RSAPELPEGIL	11	Unmodified	_RSAPELPEGIL_					0	0	0		ENSG00000008323|ENST00000684764|PLEKHG6;nc|ENSG00000008323|Q3KR16-2|PLEKHG6;nc|ENSG00000008323|Q3KR16-3|PLEKHG6	ENSG00000008323|ENST00000684764|PLEKHG6	ENSG00000008323|ENST00000684764|PLEKHG6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	591.32987	1180.64519	-1.8377	-0.0010867	1.8785	0.0011108	0.040862	2.4163E-05	591.3307977856678	119.84	1.0361	119.67	119.25	120.29	-0.17138	0.16032	0.0015291	NaN	56.434	45	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81372			51205	918	42384	42415							0.0620906870624367
RSAPELPEGIL	11	Unmodified	_RSAPELPEGIL_					0	0	0		ENSG00000008323|ENST00000684764|PLEKHG6;nc|ENSG00000008323|Q3KR16-2|PLEKHG6;nc|ENSG00000008323|Q3KR16-3|PLEKHG6	ENSG00000008323|ENST00000684764|PLEKHG6	ENSG00000008323|ENST00000684764|PLEKHG6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	591.32987	1180.64519	0.56495	0.00033407	-0.89251	-0.00052777	-0.32756	-0.0001937	591.3292040865896	120.49	1.1435	119.46	118.92	120.07	-1.0271	-0.051558	-0.0017481	NaN	56.434	47	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119240			51206	918	42384	42415							0.0620906870624367
RSAPHFLLFF	10	Unmodified	_RSAPHFLLFF_					0	0	0			REV__ENST00000541143.5_1_12:131453487-131453694:+|nuORF	REV__ENST00000541143.5_1_12:131453487-131453694:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	618.3240356445312	2	617.840208	1233.66586	1.0607	0.00065531	-1.278	-0.00078959	-0.21733	-0.00013428	618.3420247800682	124.6	0.18584	124.6	124.51	124.7	0					6	3	2	0	0	0	0.026802	1	14391	14391		34.173	11.13	1	22040	+		51207	27364	42385	42416	55520	55520					0.058377038765456746
RSAPITLLTGV	11	Unmodified	_RSAPITLLTGV_					0	0	0			REV__ENST00000525704.2_1_11:126870607-126870700:-|nuORF	REV__ENST00000525704.2_1_11:126870607-126870700:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.3411865234375	2	564.342781	1126.67101	1.0767	0.00060761	-3.8201	-0.0021559	-2.7435	-0.0015483	564.340491084043	39.247	1.4581	36.321	36.097	37.555	-2.9264					57	28	3	0	0	0	0.52842	1	1595	1595		51.193	4.7359	1	229810	+		51208	27117	42386	42417	55521	55521					0.1127396294848495
RSAQPWIAALA	11	Unmodified	_RSAQPWIAALA_					0	0	0		nc|ENSG00000111801|O00478-2|BTN3A3;ENSG00000111801|ENST00000244519|BTN3A3;ENST00000531055.1_1_6:26370743-26373574:+|nuORF;ENST00000480110.5_1_6:26445933-26448699:+|nuORF;nc|ENSG00000186470|P78410-3|BTN3A2;nc|ENSG00000186470|P78410-2|BTN3A2;ENSG00000186470|ENST00000377708|BTN3A2	nc|ENSG00000111801|O00478-2|BTN3A3	nc|ENSG00000111801|O00478-2|BTN3A3	MULTI-SECPEP	OvCa99_classI_Rep5	1	591.8133544921875	2	592.332747	1182.65094	-0.12645	-7.4898E-05	0.71664	0.00042449	0.59019	0.00034959	592.3329655279355	69.455	0.28345	69.455	69.268	69.552	0					8	6	2	0	0	0	0.025701	1	6623	6623		36.447	19.974	1	165000			51209	2855	42387	42418	55522	55522					0.06692212008556453
RSARTGHLV	9	Unmodified	_RSARTGHLV_					0	0	0		nc|ENSG00000248383|Q9H158-2|PCDHAC1;ENSG00000248383|ENST00000253807|PCDHAC1;PCDHAC1|p.V624Ffs*13|1|0.09|ENSG00000248383|chr5:140928762-140928762|G/-|frameshift_variant	nc|ENSG00000248383|Q9H158-2|PCDHAC1	nc|ENSG00000248383|Q9H158-2|PCDHAC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.78948974609375	2	498.788507	995.562461	-0.32841	-0.00016381	1.7524	0.0008741	1.424	0.00071029	498.78933667981374	116.43	2.9591	115.07	114.6	117.56	-1.3645					206	56	7	0	0	0	0.42576	1	10965	10965		49.536	1.6204	1	3166500			51210	9406	42388	42419	55523	55523					0.06450216488747174
RSARWLLRA	9	Unmodified	_RSARWLLRA_					0	0	0		ENSG00000138095|ENST00000260665|LRPPRC	ENSG00000138095|ENST00000260665|LRPPRC	ENSG00000138095|ENST00000260665|LRPPRC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.3145141601562	2	564.841074	1127.66759	0.89971	0.00050819	3.5296	0.0019937	4.4293	0.0025019	565.3444358765938	90.981	0.61742	88.415	88.067	88.685	-2.5659					18	11	2	0	0	0	0.027455	1	7850	7850		51.335	0	1	16840			51211	4658	42389	42420	55524	55524					0.10886757685170778
RSASGRRSP	9	Unmodified	_RSASGRRSP_					0	0	0			REV__ENST00000476772.5_1_6:43738443-43746274:+|nuORF	REV__ENST00000476772.5_1_6:43738443-43746274:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.3147277832031	2	487.267939	972.521324	-1.0792	-0.00052588	4.2291	0.0020607	3.1499	0.0015348	487.2698119935481	50.682	0.8163	47.508	47.256	48.072	-3.1734					29	15	3	0	0	0	0.027461	1	2967	2967		32.812	1.2826	1	52449	+		51212	18114	42390	42421	55525	55525					0.03396455449274072
RSASVTPKI	9	Unmodified	_RSASVTPKI_					0	0	0		nc|ENSG00000163565|Q16666-3|IFI16;ENST00000493884.5_1_1:158984458-159022017:+|nuORF;nc|ENSG00000163565|Q16666-6|IFI16;nc|ENSG00000163565|Q16666-2|IFI16;ENSG00000163565|ENST00000295809|IFI16;nc|ENSG00000163565|Q16666-8|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	nc|ENSG00000163565|Q16666-3|IFI16	MULTI-MSMS	OvCa99_classI_Rep5	1	479.78704833984375	2	479.787641	957.56073	-0.70234	-0.00033697	0.67745	0.00032503	-0.024886	-1.194E-05	479.78785946180045	43.496	0.81064	43.496	43.27	44.08	0					43	18	3	0	0	0	0.26076	1	2899	2899		67.494	11.06	1	2776700			51213	6329	42391	42422	55526	55526					0.0802516268013278
RSATVTINL	9	Unmodified	_RSATVTINL_					0	0	0		nc|ENSG00000248383|Q9H158-2|PCDHAC1;ENSG00000248383|ENST00000253807|PCDHAC1;PCDHAC1|p.V624Ffs*13|1|0.09|ENSG00000248383|chr5:140928762-140928762|G/-|frameshift_variant	nc|ENSG00000248383|Q9H158-2|PCDHAC1	nc|ENSG00000248383|Q9H158-2|PCDHAC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.258544921875	2	487.785099	973.555644	-0.84022	-0.00040985	2.47	0.0012048	1.6297	0.00079496	487.78544538610754	41.961	1.1318	38.981	38.748	39.88	-2.9804					43	21	3	0	0	0	0.027446	1	1955	1955		42.864	0	1	100400			51214	9406	42392	42423	55527	55527					0.06780858817501212
RSAVPRAPRP	10	Unmodified	_RSAVPRAPRP_					0	0	0			REV__ENST00000283290.9_1_3:112280446-112280620:-|nuORF	REV__ENST00000283290.9_1_3:112280446-112280620:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8320922851562	2	553.830706	1105.64686	1.4061	0.00077877	-2.5843	-0.0014313	-1.1781	-0.00065248	553.8291816775361	139.45	3.0735	137.95	136.76	139.84	-1.4952					150	61	3	0	0	0	0.73378	1	13579	13579		26.693	2.4902	1	110800	+		51215	24123	42393	42424	55528	55528					0.09826167305504896
RSAYHHVI	8	Unmodified	_RSAYHHVI_					0	0	0			REV__nc|ENSG00000138606|Q7M4L6-2|SHF	REV__nc|ENSG00000138606|Q7M4L6-2|SHF	MULTI-SECPEP	OvCa9_classI_Rep2	2	491.7814025878906	2	491.764501	981.514448	0.1303	6.4078E-05	-1.1052	-0.00054349	-0.97488	-0.00047941	491.7637418626389	83.57	1.7979	81.971	81.55	83.347	-1.5988					84	35	4	0	0	0	0.028476	1	7325	7325		40.573	0	1	217450	+		51216	28884	42394	42425	55529	55529					0.022951425686983384
RSCLTYLAREG	11	Unmodified	_RSCLTYLAREG_					0	0	0			REV__ENST00000421814.6_1_5:162932622-162940637:+|nuORF	REV__ENST00000421814.6_1_5:162932622-162940637:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	424.2590026855469	3	423.552045	1267.63431	-1.0223	-0.00043301	-2.2822	-0.00096661	-3.3045	-0.0013996	423.55090429502434	54.165	1.2303	50.918	50.774	52.004	-3.2474					38	23	3	0	0	0	0.025861	1	3437	3437		15.921	1.227	1	45405	+		51217	25610	42395	42426	55530	55530					0.011193430603043453
RSCPVIELS	9	Unmodified	_RSCPVIELS_					0	0	0			REV__ENST00000486564.5_1_2:31133891-31178528:-|nuORF	REV__ENST00000486564.5_1_2:31133891-31178528:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.78216552734375	2	502.265684	1002.51682	-0.63758	-0.00032023	-3.1661	-0.0015902	-3.8037	-0.0019105	502.263837507493	42.418	0.59724	42.418	42.199	42.796	0					30	13	3	0	0	0	0.027462	1	2749	2749		19.104	0	1	429830	+		51218	20547	42396	42427	55531	55531					0.015658101914937106
RSCPVIELS	9	Unmodified	_RSCPVIELS_					0	0	0			REV__ENST00000486564.5_1_2:31133891-31178528:-|nuORF	REV__ENST00000486564.5_1_2:31133891-31178528:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	502.265684	1002.51682	-1.5626	-0.00078485	-7.4879	-0.0037609	-9.0505	-0.0045458	502.2629322663415	45.06	0.3626	42.022	41.816	42.178	-3.0385	-0.19803	-0.0039057	NaN	23.523	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9754.9	+		51219	20547	42396	42427							0.015658101914937106
RSCQRERM	8	Unmodified	_RSCQRERM_					0	0	0			REV__ENSG00000271601|ENST00000604000|LIX1L	REV__ENSG00000271601|ENST00000604000|LIX1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.2734985351562	2	533.255659	1064.49677	1.8174	0.00096911	-1.5162	-0.00080855	0.30111	0.00016057	533.2551764246322	87.318	0.20362	87.318	87.174	87.378	0					9	4	3	0	0	0	0.028476	1	9232	9232		23.042	3.7798	1	393730	+		51220	23611	42397	42428	55532	55532					-0.032902640201200484
RSCQYVIY	8	Unmodified	_RSCQYVIY_					0	0	0			REV__nc|ENSG00000170471|Q86X10-3|RALGAPB	REV__nc|ENSG00000170471|Q86X10-3|RALGAPB	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2726440429688	2	516.252577	1030.4906	-0.7943	-0.00041006	-1.8395	-0.00094965	-2.6338	-0.0013597	516.7526014347169	59.819	0.19187	59.819	59.726	59.918	0					6	4	2	0	0	0	0.028476	1	5168	5168		42.474	1.9018	1	108560	+		51221	21542	42398	42429	55533	55533					-0.02342458979978801
RSDAKKIVI	9	Unmodified	_RSDAKKIVI_					0	0	0			REV__tr|A0A553SQP1|A0A553SQP1_NIACIATP-dependentDNAligaseOS=NialliacirculansOX=1397GN=CEQ21_07745PE=4SV=1	REV__tr|A0A553SQP1|A0A553SQP1_NIACIATP-dependentDNAligaseOS=NialliacirculansOX=1397GN=CEQ21_07745PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	516.30322265625	2	515.324391	1028.63423	-1.0386	-0.00053522	0.17408	8.9706E-05	-0.86453	-0.00044551	515.3242879217944	61.076	0.99397	58.306	58.083	59.077	-2.7702					28	18	2	0	0	0	0.027455	1	4601	4601		26.693	4.1133	1	28336	+		51222	30650	42399	42430	55534	55534					0.1210571112260368
RSDASATTLY	10	Unmodified	_RSDASATTLY_					0	0	0		ENSG00000161594|ENST00000293303|KLHL10	ENSG00000161594|ENST00000293303|KLHL10	ENSG00000161594|ENST00000293303|KLHL10	MULTI-SECPEP	OvCa9_classI_Rep3	3	542.7965698242188	2	542.767103	1083.51965	-0.59748	-0.00032429	3.716	0.0020169	3.1185	0.0016926	542.7693063249168	77.595	0.30602	75.243	75.047	75.353	-2.3527					7	5	2	0	0	0	0.026968	1	4057	4057		22.58	3.4761	1	23992			51223	6132	42400	42431	55535	55535					-0.018766431499898317
RSDAYHPD	8	Unmodified	_RSDAYHPD_					0	0	0		nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;ENSG00000072163|ENST00000355119|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;ENST00000469300.6_1_2:128400496-128412764:-|nuORF;ENST00000466410.5_1_2:128398362-128421974:-|nuORF;nc|ENSG00000072163|Q7Z4I7-4|LIMS2	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.8005676269531	2	480.712131	959.409708	-0.50775	-0.00024408	-0.75067	-0.00036086	-1.2584	-0.00060494	480.7115492688076	40.163	0.23126	40.163	40.016	40.247	0					6	4	2	0	0	0	0.028476	1	2405	2405		60.972	16.855	1	22710			51224	1467	42401	42432	55536	55536					-0.07162023698538178
RSDEDYCCH	9	Unmodified	_RSDEDYCCH_					0	0	0			REV__nc|ENSG00000100593|Q6H9L7-5|ISM2	REV__nc|ENSG00000100593|Q6H9L7-5|ISM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.8258056640625	2	564.197673	1126.38079	2.5632	0.0014461	3.5281	0.0019905	6.0912	0.0034367	564.1988710613529	110.67	0.49012	110.67	110.45	110.94	0					17	10	2	0	0	0	0.027462	1	12539	12539		19.997	0	1	78201	+		51225	17433	42402	42433	55537	55537					-0.17734252381478655
RSDETLIDP	9	Unmodified	_RSDETLIDP_					0	0	0		FAM47A|p.P713T|1|0.29|ENSG00000185448|chrX:34130142-34130142|G/T|missense_variant	FAM47A|p.P713T|1|0.29|ENSG00000185448|chrX:34130142-34130142|G/T|missense_variant	FAM47A|p.P713T|1|0.29|ENSG00000185448|chrX:34130142-34130142|G/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.79443359375	2	523.261653	1044.50875	-0.37441	-0.00019591	-1.0254	-0.00053657	-1.3998	-0.00073248	523.2607062006189	57.06	0.605	57.06	56.833	57.438	0					16	13	2	0	0	0	0.027462	1	4756	4756		29.15	1.2673	1	207680			51226	14321	42403	42434	55538	55538					-0.011720455242766548
RSDFKSTELI	10	Unmodified	_RSDFKSTELI_					0	0	0			REV__ENSG00000173572|ENST00000342929|NLRP13	REV__ENSG00000173572|ENST00000342929|NLRP13	MULTI-MSMS	OvCa99_classI_Rep5	1	598.3148193359375	2	598.319502	1194.62445	2.0964	0.0012543	-4.4632	-0.0026704	-2.3668	-0.0014161	598.3169192735461	110.35	1.5661	110.35	110.27	111.83	0					65	34	3	0	0	0	0.38315	1	12570	12570		70.816	5.3508	1	1344000	+		51227	21785	42404	42435	55539	55539					0.0349247832657511
RSDKDLKNIY	10	Unmodified	_RSDKDLKNIY_					0	0	0			REV__tr|A0A7D6ZQA0|A0A7D6ZQA0_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_23505PE=3SV=1	REV__tr|A0A7D6ZQA0|A0A7D6ZQA0_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_23505PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	626.3383178710938	2	626.338227	1250.6619	2.0915	0.00131	-1.78	-0.0011149	0.31155	0.00019513	626.337004210225	123.71	1.9187	122.67	121.68	123.6	-1.0377					71	36	4	0	0	0	0.6349	1	9546	9546		37.812	2.6595	1	298190	+		51228	32146	42405	42436	55540	55540					0.04659569592195112
RSDMHILLI	9	Oxidation (M)	_RSDM(Oxidation (M))HILLI_		RSDM(1)HILLI		RSDM(100)HILLI	0	0	1			REV__ENSG00000177151|ENST00000641268|OR2T35	REV__ENSG00000177151|ENST00000641268|OR2T35	MULTI-MSMS	OvCa9_classI_Rep2	2	557.3114624023438	2	557.307884	1112.60121	1.2004	0.00066899	2.5245	0.0014069	3.7249	0.0020759	557.3090127399616	112.67	2.0232	112.55	112.18	114.2	-0.12174					94	40	4	0	0	0	0.083631	2	10680	10680;10686		101.6	19.296	1	394630	+		51229	21988	42406	42437	55541;55542	55541		510			0.049417610082628016
RSDSLRTSP	9	Unmodified	_RSDSLRTSP_					0	0	0		ENST00000475688.1_1_3:50378843-50379883:-|nuORF	ENST00000475688.1_1_3:50378843-50379883:-|nuORF	ENST00000475688.1_1_3:50378843-50379883:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.8155212402344	2	509.767437	1017.52032	-0.56664	-0.00028886	3.687	0.0018795	3.1204	0.0015907	509.7692793624599	76.749	0.86353	73.81	73.55	74.414	-2.9389					35	17	3	0	0	0	0.027446	1	6110	6110		42.864	0	1	324290			51230	12453	42407	42438	55543	55543					0.012261962897241574
RSDSYNVVE	9	Unmodified	_RSDSYNVVE_					0	0	0			REV__GTPBP2-VEGFA|1|fusion	REV__GTPBP2-VEGFA|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.7841796875	2	534.751453	1067.48835	0.03904	2.0877E-05	0.044494	2.3793E-05	0.083534	4.467E-05	534.7532234366236	62.191	0.25389	62.191	62.081	62.335	0					8	5	2	0	0	0	0.027462	1	5536	5536		26.063	7.739	1	139120	+		51231	21698	42408	42439	55544	55544					-0.042692161840932386
RSDTPLIYK	9	Unmodified	_RSDTPLIYK_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	OvCa9_classI_Rep2	2	546.807373046875	2	546.806031	1091.59751	-0.5412	-0.00029593	0.28026	0.00015325	-0.26094	-0.00014268	546.8061006605118	57.83	1.5522	55.038	54.625	56.177	-2.792					87	30	4	0	0	0	0.31122	1	4141	4141		61.691	0.71934	1	347280			51232	8588	42409	42440	55545	55545					0.05537414506034111
RSDTPLIYK	9	Unmodified	_RSDTPLIYK_					0	0	0		ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.8078002929688	2	546.806031	1091.59751	-0.5088	-0.00027822	-0.2639	-0.0001443	-0.77271	-0.00042252	546.8058247000695	58.371	1.8989	54.979	54.448	56.347	-3.392					90	37	4	0	0	0	0.0441	4	3841	3830;3841;3854;3866		123.21	48.165	1	1444300			51233	8588	42409	42440	55546;55547;55548;55549	55547					0.05537414506034111
RSDYLFDQWVQ	11	Unmodified	_RSDYLFDQWVQ_					0	0	0			REV__ENSG00000271503|ENST00000651122|CCL5	REV__ENSG00000271503|ENST00000651122|CCL5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.767822265625	3	486.233369	1455.67828	-0.70638	-0.00034346	-3.0502	-0.0014831	-3.7566	-0.0018266	486.2315951110788	69.873	0.43933	66.392	66.249	66.688	-3.4812					12	8	2	0	0	0	0.026277	1	5243	5243		17.833	0	1	18483	+		51234	23610	42410	42441	55550	55550					-0.0313334924173887
RSEDDLEDL	9	Unmodified	_RSEDDLEDL_					0	0	0			REV__tr|A0A7D6ZRU1|A0A7D6ZRU1_9CLOTCBSdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05065PE=4SV=1	REV__tr|A0A7D6ZRU1|A0A7D6ZRU1_9CLOTCBSdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05065PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2567749023438	2	546.2462	1090.47785	1.1845	0.00064702	-0.56911	-0.00031088	0.61538	0.00033615	546.2454870797352	91.117	0.8124	91.117	90.899	91.711	0					32	19	3	0	0	0	0.027462	1	9776	9776		21.96	0	1	848540	+		51235	32166	42411	42442	55551	55551					-0.06377243629208351
RSEDPDTSM	9	Unmodified	_RSEDPDTSM_					0	0	0		ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A;CPT1A|p.L518Sfs*39|1|0.36|ENSG00000110090|chr11:68775339-68775340|-/A|frameshift_variant	ENSG00000110090|ENST00000265641|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.7803955078125	2	519.213846	1036.41314	0.87163	0.00045256	-0.14151	-7.3475E-05	0.73012	0.00037909	519.213788703329	41.295	0.49265	38.585	38.389	38.881	-2.7097					11	9	2	0	0	0	0.027462	1	2165	2165		34.173	7.4796	1	12335			51236	2757	42412	42443	55552	55552					-0.10361141706835042
RSEECFLSLK	10	Unmodified	_RSEECFLSLK_					0	0	0			REV__ENSG00000130222|ENST00000252506|GADD45G	REV__ENSG00000130222|ENST00000252506|GADD45G	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.8995666503906	3	404.541146	1210.60161	0.78108	0.00031598	-0.43304	-0.00017518	0.34804	0.0001408	404.5407864592447	40.3	0.60437	40.3	40.106	40.711	0					33	12	4	0	0	0	0.027006	1	2483	2483		18.531	15.32	1	852330	+		51237	18930	42413	42444	55553	55553					0.004731359374545718
RSEELLLY	8	Unmodified	_RSEELLLY_					0	0	0		ENST00000474676.1_1_9:126331853-126520026:-|nuORF	ENST00000474676.1_1_9:126331853-126520026:-|nuORF	ENST00000474676.1_1_9:126331853-126520026:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.2945556640625	2	511.779482	1021.54441	0.15776	8.0736E-05	0.08243	4.2186E-05	0.24019	0.00012292	511.7794383304893	70.661	0.38925	70.661	70.488	70.877	0					17	9	3	0	0	0	0.028476	1	6779	6779		19.997	0	1	506600			51238	12437	42414	42445	55554	55554					0.034500367233931684
RSEEPSQA	8	Unmodified	_RSEEPSQA_					0	0	0			REV__nc|ENSG00000167103|Q5T9C9-2|PIP5KL1	REV__nc|ENSG00000167103|Q5T9C9-2|PIP5KL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.75445556640625	2	452.211963	902.409374	1.1181	0.0005056	-1.2781	-0.00057796	-0.16003	-7.2366E-05	452.21130092923266	68.529	1.0825	65.039	64.72	65.802	-3.4902					28	21	2	0	0	0	0.028476	1	5055	5055		53.351	10.877	1	73260	+		51239	21251	42415	42446	55555	55555					-0.045734434183714257
RSEERPERLL	10	Unmodified	_RSEERPERLL_					0	0	0		ENSG00000215045|ENST00000457091|GRID2IP	ENSG00000215045|ENST00000457091|GRID2IP	ENSG00000215045|ENST00000457091|GRID2IP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	428.2696533203125	3	428.905476	1283.6946	0.66194	0.00028391	1.5753	0.00067564	2.2372	0.00095955	429.2414185032825	57.425	0.15308	54.08	53.985	54.138	-3.3449					4	2	2	0	0	0	0.026915	1	3724	3724		14.694	6.2864	1	5024.1			51240	9200	42416	42447	55556	55556					0.0640977671505425
RSEFSFLL	8	Unmodified	_RSEFSFLL_					0	0	0			REV__ENSG00000177096|ENST00000321753|PHETA2	REV__ENSG00000177096|ENST00000321753|PHETA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.2914733886719	2	499.768917	997.523281	1.8206	0.00090987	-1.183	-0.00059124	0.63755	0.00031863	500.271418468441	93.098	0.4169	93.098	92.762	93.179	0					10	9	2	0	0	0	0.028476	1	10052	10052		30.504	0	1	236240	+		51241	21985	42417	42448	55557	55557					0.024420714145321654
RSEGRLNPR	9	Unmodified	_RSEGRLNPR_					0	0	0			REV__ENSG00000021776|ENST00000156471|AQR	REV__ENSG00000021776|ENST00000156471|AQR	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.3369140625	2	542.802146	1083.58974	2.347	0.001274	3.8614	0.002096	6.2084	0.0033699	542.8031719926686	84.737	0.73963	84.737	84.388	85.127	0					29	17	2	0	0	0	0.027462	1	8878	8878		39.253	10.103	1	1776100	+		51242	16549	42418	42449	55558	55558					0.05128700029126776
RSELKEYEKL	10	Unmodified	_RSELKEYEKL_					0	0	0			REV__ENSG00000189233|ENST00000413272|NUGGC	REV__ENSG00000189233|ENST00000413272|NUGGC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	647.8312377929688	2	647.853709	1293.69287	0.37133	0.00024057	2.971	0.0019248	3.3423	0.0021653	647.8558231365994	63.926	0.48611	60.452	60.298	60.784	-3.475					13	9	2	0	0	0	0.026968	1	4509	4509		36.447	6.129	1	28406	+		51243	22770	42419	42450	55559	55559					0.05776722906421128
RSELLSLY	8	Unmodified	_RSELLSLY_					0	0	0		ENST00000409700.4_2_5:140308486-140308663:+|nuORF	ENST00000409700.4_2_5:140308486-140308663:+|nuORF	ENST00000409700.4_2_5:140308486-140308663:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.7703857421875	2	490.7742	979.533846	0.67054	0.00032908	-0.72756	-0.00035707	-0.057027	-2.7987E-05	490.7734227837178	68.529	0.54364	65.039	64.769	65.312	-3.4902					15	10	2	0	0	0	0.028476	1	5066	5066		53.351	5.4358	1	43260			51244	11533	42420	42451	55560	55560					0.04326054068951635
RSEMLFISP	9	Unmodified	_RSEMLFISP_					0	0	0		ENST00000466496.5_1_1:149900713-149900755:-|nuORF	ENST00000466496.5_1_1:149900713-149900755:-|nuORF	ENST00000466496.5_1_1:149900713-149900755:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	540.2764892578125	2	540.281334	1078.54812	-1.8058	-0.00097565	-4.3384	-0.0023439	-6.1442	-0.0033196	540.2788136697856	33.715	0.49348	31.005	30.823	31.316	-2.7097					18	9	3	0	0	0	0.48324	1	1237	1237		44.117	1.7207	1	100520			51245	12292	42421	42452	55561	55561					0.011983832255964444
RSEPHCLVL	9	Unmodified	_RSEPHCLVL_					0	0	0		nc|ENSG00000156256|Q9Y5T5-3|USP16;nc|ENSG00000156256|Q9Y5T5-2|USP16;ENSG00000156256|ENST00000399976|USP16;nc|ENSG00000156256|Q9Y5T5-5|USP16;ENST00000474835.5_1_21:30400234-30414894:+|nuORF	nc|ENSG00000156256|Q9Y5T5-3|USP16	nc|ENSG00000156256|Q9Y5T5-3|USP16	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.8639526367188	2	527.279126	1052.5437	-1.2989	-0.00068488	4.3275	0.0022818	3.0286	0.0015969	527.7819660258874	103.61	0.50926	103.61	103.43	103.94	0					17	11	2	0	0	0	0.027462	1	11626	11626		47.657	8.6358	1	100280			51246	5829	42422	42453	55562	55562					0.019529188026808697
RSEQKLDQQL	10	Unmodified	_RSEQKLDQQL_					0	0	0			REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	MULTI-SECPEP	OvCa9_classI_Rep2	2	621.8560180664062	2	622.833308	1243.65206	-0.68732	-0.00042809	3.132	0.0019507	2.4447	0.0015226	622.8353387460633	70.058	0.90027	67.487	67.214	68.114	-2.5707					27	17	2	0	0	0	0.026464	1	5615	5615		51.193	6.1705	1	39807	+		51247	19033	42423	42454	55563	55563					0.03998381586825417
RSEQYRQV	8	Unmodified	_RSEQYRQV_					0	0	0		ENSG00000043355|ENST00000376335|ZIC2	ENSG00000043355|ENST00000376335|ZIC2	ENSG00000043355|ENST00000376335|ZIC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.808837890625	2	533.275429	1064.53631	-0.88749	-0.00047328	-2.4499	-0.0013065	-3.3374	-0.0017797	533.2741165300885	78.673	0.56041	75.922	75.619	76.179	-2.7514					15	11	2	0	0	0	0.028476	1	6310	6310		73.975	35.169	1	33440			51248	1128	42424	42455	55564	55564					0.006619025266218159
RSERGTPM	8	Unmodified	_RSERGTPM_					0	0	0		ENST00000271469.7_2_1:162531473-162535866:+|nuORF	ENST00000271469.7_2_1:162531473-162535866:+|nuORF	ENST00000271469.7_2_1:162531473-162535866:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.2381286621094	2	467.232176	932.449799	-0.92809	-0.00043364	4.1181	0.0019241	3.19	0.0014905	467.2330760488886	43.932	0.80608	40.925	40.483	41.289	-3.0074					28	15	3	0	0	0	0.028476	1	2177	2177		55.504	0.72789	1	43423			51249	9993	42425	42456	55565	55565					-0.019128002995898896
RSFAQIDN	8	Unmodified	_RSFAQIDN_					0	0	0			REV__ENSG00000111642|ENST00000544040|CHD4;REV__ENSG00000116254|ENST00000262450|CHD5	REV__ENSG00000111642|ENST00000544040|CHD4	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.7551574707031	2	475.738148	949.461744	-0.30203	-0.00014369	0.7308	0.00034767	0.42877	0.00020398	475.73832808815837	52.236	0.65898	52.236	52.038	52.697	0					22	14	3	0	0	0	0.028476	1	4133	4133		18.262	0	1	715510	+		51250	18041;18295	42426	42457	55566	55566					-0.015008602847615293
RSFEVFAKA	9	Unmodified	_RSFEVFAKA_					0	0	0			REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	REV__nc|ENSG00000156414|Q8NDG6-2|TDRD9	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.3096923828125	2	527.787641	1053.56073	1.9171	0.0010118	0.18749	9.8954E-05	2.1046	0.0011108	527.7879729263447	95.398	0.49615	95.398	95.119	95.615	0					27	11	3	0	0	0	0.027453	1	10415	10415		37.812	0	1	366700	+		51251	20477	42427	42458	55567	55567					0.03609162680140798
RSFFLGRMET	10	Unmodified	_RSFFLGRMET_					0	0	0		nc|ENSG00000205629|Q9UIC8-2|LCMT1	nc|ENSG00000205629|Q9UIC8-2|LCMT1	nc|ENSG00000205629|Q9UIC8-2|LCMT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.5480041503906	3	415.213252	1242.61793	0.36727	0.0001525	-1.9797	-0.00082198	-1.6124	-0.00066948	415.21263962362633	48.822	0.66198	48.822	48.544	49.206	0					34	14	4	0	0	0	0.026975	1	3654	3654		14.086	0.57807	1	379570			51252	15276	42428	42459	55568	55568					0.006322618942249392
RSFICLNV	8	Unmodified	_RSFICLNV_					0	0	0			REV__AluSx1_dup75655|chr12:66057683-66057959:-|1.7209856805655352|0.0284294000555966|5.92|429.0|12|1|anti-sense	REV__AluSx1_dup75655|chr12:66057683-66057959:-|1.7209856805655352|0.0284294000555966|5.92|429.0|12|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.7048034667969	2	476.257662	950.500772	0.55817	0.00026583	-0.41108	-0.00019578	0.14709	7.0051E-05	476.257343585281	83.741	0.82297	81.078	80.681	81.504	-2.6629					26	16	2	0	0	0	0.028476	1	7028	7028		23.042	0	1	47395	+		51253	15613	42429	42460	55569	55569					0.023541487452462206
RSFIKSTE	8	Unmodified	_RSFIKSTE_					0	0	0			REV__tr|A0A553SGK6|A0A553SGK6_NIACIPhosphateABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_11015PE=4SV=1	REV__tr|A0A553SGK6|A0A553SGK6_NIACIPhosphateABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_11015PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.2288513183594	2	484.263999	966.513445	-0.47227	-0.0002287	0.51763	0.00025067	0.045365	2.1969E-05	484.2641188138098	50.816	0.5723	50.816	50.421	50.993	0					18	12	2	0	0	0	0.028476	1	3881	3881		51.335	3.4199	1	452730	+		51254	29714	42430	42461	55570	55570					0.02884883409149097
RSFKKAWTE	9	Unmodified	_RSFKKAWTE_					0	0	0		ENST00000460773.5_1_X:138814597-138879340:-|nuORF;nc|ENSG00000101974|Q8NB49-2|ATP11C;nc|ENSG00000101974|Q8NB49-3|ATP11C;nc|ENSG00000101974|Q8NB49-4|ATP11C;ENSG00000101974|ENST00000682941|ATP11C;nc|ENSG00000101974|Q8NB49|ATP11C	ENST00000460773.5_1_X:138814597-138879340:-|nuORF	ENST00000460773.5_1_X:138814597-138879340:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.8521728515625	2	576.811648	1151.60874	2.0575	0.0011868	2.2283	0.0012853	4.2858	0.0024721	576.8131922714362	84.779	0.12577	84.779	84.716	84.841	0					4	2	2	0	0	0	0.027462	1	8867	8867		5.5578	0	1	57177			51255	12156	42431	42462	55571	55571					0.03900236600179596
RSFKYKEM	8	Unmodified	_RSFKYKEM_					0	0	0			REV__tr|A0A7D6VU30|A0A7D6VU30_9CLOTtrehaloseoperonrepressorOS=ClostridiumintestinaleOX=36845GN=treRPE=4SV=1	REV__tr|A0A7D6VU30|A0A7D6VU30_9CLOTtrehaloseoperonrepressorOS=ClostridiumintestinaleOX=36845GN=treRPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.3197021484375	2	544.781502	1087.54845	-0.50965	-0.00027765	-2.5681	-0.001399	-3.0777	-0.0016767	544.779938209392	62.005	1.6341	58.547	58.057	59.691	-3.4577					83	33	3	0	0	0	0.028476	1	4418	4418		31.955	2.8053	1	271000	+		51256	31647	42432	42463	55572	55572					0.008178029454484204
RSFRGQRRRRR	11	Unmodified	_RSFRGQRRRRR_					0	0	0		ENST00000418710.2_1_7:20824815-20825286:-|nuORF	ENST00000418710.2_1_7:20824815-20825286:-|nuORF	ENST00000418710.2_1_7:20824815-20825286:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.9540710449219	3	510.973552	1529.89883	-1.4679	-0.00075004	1.0003	0.00051115	-0.46752	-0.00023889	511.30879670474553	48.895	0.26151	45.788	45.604	45.866	-3.1077					5	4	2	0	0	0	0.026448	1	2707	2707		3.026	0	1	13708			51257	11643	42433	42464	55573	55573					0.15507198439559033
RSFRQYLEESL	11	Unmodified	_RSFRQYLEESL_					0	0	0		ENSG00000197816|ENST00000529487|CCDC180;nc|ENSG00000197816|Q9P1Z9|CCDC180;CCDC180|p.H1510Ffs*11|1|0.03|ENSG00000197816|chr9:97370685-97370686|-/TT|frameshift_variant	ENSG00000197816|ENST00000529487|CCDC180	ENSG00000197816|ENST00000529487|CCDC180	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.7450866699219	3	476.580769	1426.72048	-0.031853	-1.518E-05	-0.41157	-0.00019615	-0.44342	-0.00021133	476.580455611485	91.409	0.50494	88.866	88.657	89.162	-2.5425					17	9	2	0	0	0	0.025908	1	7904	7904		27.644	9.1129	1	18271			51258	8751	42434	42465	55574	55574					0.024186261666955033
RSFRQYLEESL	11	Unmodified	_RSFRQYLEESL_					0	0	0		ENSG00000197816|ENST00000529487|CCDC180;nc|ENSG00000197816|Q9P1Z9|CCDC180;CCDC180|p.H1510Ffs*11|1|0.03|ENSG00000197816|chr9:97370685-97370686|-/TT|frameshift_variant	ENSG00000197816|ENST00000529487|CCDC180	ENSG00000197816|ENST00000529487|CCDC180	MULTI-MATCH	OvCa9_classI_Rep2	2		3	476.580769	1426.72048	1.632	0.00077778	-1.5624	-0.00074462	0.069565	3.3154E-05	476.5799431126922	90	0.59483	88.698	88.433	89.028	-1.302	-0.1183	-0.0010931	NaN	27.644	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22539			51259	8751	42434	42465							0.024186261666955033
RSFRQYLEESL	11	Unmodified	_RSFRQYLEESL_					0	0	0		ENSG00000197816|ENST00000529487|CCDC180;nc|ENSG00000197816|Q9P1Z9|CCDC180;CCDC180|p.H1510Ffs*11|1|0.03|ENSG00000197816|chr9:97370685-97370686|-/TT|frameshift_variant	ENSG00000197816|ENST00000529487|CCDC180	ENSG00000197816|ENST00000529487|CCDC180	MULTI-MATCH	OvCa9_classI_Rep3	3		3	476.580769	1426.72048	0.033859	1.6137E-05	-0.19879	-9.4742E-05	-0.16493	-7.8605E-05	476.58057989541186	90.964	0.7059	88.884	88.67	89.376	-2.0805	0.067956	0.00085657	NaN	27.644	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34728			51260	8751	42434	42465							0.024186261666955033
RSFSDASL	8	Unmodified	_RSFSDASL_					0	0	0			REV__ENSG00000105219|ENST00000430325|CCNP	REV__ENSG00000105219|ENST00000430325|CCNP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.6031188964844	2	441.719424	881.424296	-2.1411	-0.00094578	2.312	0.0010212	0.17082	7.5453E-05	441.72030794280124	49.92	0.72984	46.779	46.507	47.236	-3.1416					19	13	2	0	0	0	0.028476	1	2884	2884		7.1934	0	1	24358	+		51261	17705	42435	42466	55575	55575					-0.02115951550376849
RSFTKQCQQ	9	Unmodified	_RSFTKQCQQ_					0	0	0			REV__ZFP3|p.E481Q|1|0.05|ENSG00000180787|chr17:5092945-5092945|G/C|missense_variant	REV__ZFP3|p.E481Q|1|0.05|ENSG00000180787|chr17:5092945-5092945|G/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	562.2772827148438	2	563.277115	1124.53968	-0.59592	-0.00033567	-1.5203	-0.00085636	-2.1162	-0.001192	563.777686733317	100.08	1.5876	99.248	98.567	100.15	-0.83051					55	31	3	0	0	0	0.027462	1	9150	9150		31.53	0	1	65310	+		51262	32769	42436	42467	55576	55576					-0.017611706910429348
RSFVLKGLTK	10	Unmodified	_RSFVLKGLTK_					0	0	0			REV__ENSG00000279169|ENST00000625019|PRAMEF13	REV__ENSG00000279169|ENST00000625019|PRAMEF13	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.83837890625	2	574.861141	1147.70773	1.4177	0.00081496	2.3011	0.0013228	3.7188	0.0021378	574.8623239066181	81.834	0.36538	81.834	81.613	81.979	0					12	8	3	0	0	0	0.027028	1	8458	8458		39.253	12.56	1	780570	+		51263	23653	42437	42468	55577	55577					0.13978259565078588
RSFYLLLT	8	Unmodified	_RSFYLLLT_					0	0	0		tr|A0A7D6W1H7|A0A7D6W1H7_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02780PE=4SV=1	tr|A0A7D6W1H7|A0A7D6W1H7_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02780PE=4SV=1	tr|A0A7D6W1H7|A0A7D6W1H7_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02780PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.75048828125	2	506.794935	1011.57532	-0.74464	-0.00037738	-2.9247	-0.0014822	-3.6693	-0.0018596	507.2970380754406	34.031	0.2403	34.031	33.873	34.113	0					10	4	3	0	0	0	0.028476	1	1616	1616		19.36	6.4008	1	25834			51264	35411	42438	42469	55578	55578					0.06999234828288081
RSFYVVKL	8	Unmodified	_RSFYVVKL_					0	0	0			REV__ENST00000546500.5_1_12:54680392-54680476:+|nuORF	REV__ENST00000546500.5_1_12:54680392-54680476:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	506.3020324707031	2	506.302927	1010.5913	-0.3322	-0.00016819	-4.3387	-0.0021967	-4.6709	-0.0023649	506.3007450895206	47.746	1.8648	47.746	47.465	49.33	0					95	42	5	0	0	0	0.62735	1	3500	3500		58.23	4.8785	1	13165000	+		51265	27422	42439	42470	55579	55579					0.0864294106518173
RSGAERALDT	10	Unmodified	_RSGAERALDT_					0	0	0		chr1:39572586-39576552|301|18.53|0.64|4.86|-|2|PABPC4,PABPC4|1	chr1:39572586-39576552|301|18.53|0.64|4.86|-|2|PABPC4,PABPC4|1	chr1:39572586-39576552|301|18.53|0.64|4.86|-|2|PABPC4,PABPC4|1	MULTI-MSMS	OvCa99_classI_Rep5	1	538.2781372070312	2	538.278169	1074.54179	-0.65528	-0.00035272	0.85583	0.00046068	0.20056	0.00010795	538.2789748231614	35.076	0.28837	35.076	34.957	35.246	0					10	5	2	0	0	0	0.61634	1	1748	1748		40.058	0.80534	1	148800			51266	258	42440	42471	55580	55580					0.007495813184050348
RSGDLAQAPPW	11	Unmodified	_RSGDLAQAPPW_					0	0	0			REV__ENST00000494045.5_1_9:136278026-136283036:-|nuORF	REV__ENST00000494045.5_1_9:136278026-136283036:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	599.3038940429688	2	599.304187	1196.59382	1.2016	0.00072011	-1.8847	-0.0011295	-0.68315	-0.00040942	599.3027980261922	115.74	1.1842	114.7	114.4	115.59	-1.0414					49	23	4	0	0	0	0.69099	1	8616	8616		32.751	8.2313	1	169750	+		51267	26718	42441	42472	55581	55581					0.0033874473217565537
RSGEETRKLR	10	Unmodified	_RSGEETRKLR_					0	0	0		chr6:31729221-31729683|134|10.74|0.05|7.86|-|2|DDAH2,DDAH2|1	chr6:31729221-31729683|134|10.74|0.05|7.86|-|2|DDAH2,DDAH2|1	chr6:31729221-31729683|134|10.74|0.05|7.86|-|2|DDAH2,DDAH2|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	615.8604125976562	2	616.346917	1230.67928	1.919	0.0011828	-2.2088	-0.0013614	-0.28982	-0.00017863	616.8468777878318	136.58	0.52406	136.58	136.3	136.82	0					15	10	2	0	0	0	0.026826	1	15890	15890		29.17	4.0441	1	37092			51268	512	42442	42473	55582	55582					0.07316909917835801
RSGEMLGIVV	10	Unmodified	_RSGEMLGIVV_					0	0	0			REV__tr|A0A7D6VQ38|A0A7D6VQ38_9CLOTDNArepairproteinRadAOS=ClostridiumintestinaleOX=36845GN=radAPE=3SV=1	REV__tr|A0A7D6VQ38|A0A7D6VQ38_9CLOTDNArepairproteinRadAOS=ClostridiumintestinaleOX=36845GN=radAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.2782592773438	2	530.794609	1059.57467	-0.19132	-0.00010155	2.0971	0.0011131	1.9058	0.0010116	530.7949943231953	56.36	0.56807	56.36	56.22	56.788	0					16	13	2	0	0	0	0.026982	1	4690	4690		23.042	0	1	151860	+		51269	31296	42443	42474	55583	55583					0.047260721169323006
RSGEPLVSV	9	Unmodified	_RSGEPLVSV_					0	0	0			REV__nc|ENSG00000108039|Q9NQW7-2|XPNPEP1	REV__nc|ENSG00000108039|Q9NQW7-2|XPNPEP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.2841491699219	2	472.263999	942.513445	1.4713	0.00069484	1.1179	0.00052793	2.5892	0.0012228	472.264441506628	101.3	1.1888	101.3	101.06	102.25	0					57	27	3	0	0	0	0.027426	1	11285	11285		47.657	0	1	6204100	+		51270	17870	42444	42475	55584	55584					0.03988883409158461
RSGGQKVK	8	Unmodified	_RSGGQKVK_					0	0	0		tr|A0A7D6ZWU4|A0A7D6ZWU4_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_19315PE=3SV=1	tr|A0A7D6ZWU4|A0A7D6ZWU4_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_19315PE=3SV=1	tr|A0A7D6ZWU4|A0A7D6ZWU4_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_19315PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	430.2409362792969	2	430.259051	858.503549	0.23401	0.00010069	-3.4337	-0.0014774	-3.1997	-0.0013767	430.257590390729	32.687	0.29172	32.687	32.553	32.844	0					8	5	2	0	0	0	0.028476	1	1460	1460		6.3127	2.6283	1	13530			51271	35855	42445	42476	55585	55585					0.06863740194421553
RSGHIMTK	8	Unmodified	_RSGHIMTK_					0	0	0			REV__tr|A0A553SMF7|A0A553SMF7_NIACIBeta-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_22515PE=3SV=1	REV__tr|A0A553SMF7|A0A553SMF7_NIACIBeta-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_22515PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.7859191894531	2	465.252911	928.49127	0.2687	0.00012501	-2.5295	-0.0011769	-2.2608	-0.0010519	465.25125024622963	72.808	0.23131	72.808	72.684	72.915	0					7	5	2	0	0	0	0.028476	1	7108	7108		6.7355	0	1	120850	+		51272	30324	42446	42477	55586	55586					0.024163804597378657
RSGKIPPKL	9	Unmodified	_RSGKIPPKL_					0	0	0		ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MULTI-MSMS	OvCa99_classI_Rep5	1	498.3229064941406	2	498.321651	994.62875	1.9778	0.00098557	0.016207	8.0764E-06	1.994	0.00099365	498.32152319037385	76.644	1.5982	76.644	76.158	77.757	0					118	38	6	0	0	0	0.10363	2	7720	7662;7720		96.19	7.5476	1	17267000			51273	3568	42447	42478	55587;55588	55588					0.1312203233078435
RSGKLFQII	9	Unmodified	_RSGKLFQII_					0	0	0			REV__ENSG00000189186|ENST00000451261|DCAF8L2	REV__ENSG00000189186|ENST00000451261|DCAF8L2	MULTI-MSMS	OvCa99_classI_Rep5	1	531.327880859375	2	531.326934	1060.63931	2.32	0.0012327	-0.48468	-0.00025752	1.8353	0.00097515	531.3265227453081	120.79	0.44838	120.79	120.56	121.01	0					20	9	3	0	0	0	0.62352	1	13893	13893		29.15	1.2673	1	324980	+		51274	22767	42448	42479	55589	55589					0.1114201498521652
RSGKLFQII	9	Unmodified	_RSGKLFQII_					0	0	0			REV__ENSG00000189186|ENST00000451261|DCAF8L2	REV__ENSG00000189186|ENST00000451261|DCAF8L2	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	531.326934	1060.63931	2.32	0.0012327	-0.48468	-0.00025752	1.8353	0.00097515	531.3265227453081	120.79	0.44838	120.79	120.56	121.01	0	0	0	NaN	29.15	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	324980	+		51275	22767	42448	42479							0.1114201498521652
RSGLLRPESN	10	Unmodified	_RSGLLRPESN_					0	0	0			REV__nc|ENSG00000021645|Q9Y4C0-4|NRXN3	REV__nc|ENSG00000021645|Q9Y4C0-4|NRXN3	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.8099365234375	2	564.809636	1127.60472	-0.32119	-0.00018141	1.839	0.0010387	1.5178	0.00085729	564.8105266478774	146.61	1.7739	145.17	144.75	146.53	-1.4357					75	34	3	0	0	0	0.69073	1	14458	14458		31.53	1.0262	1	178590	+		51276	16547	42449	42480	55590	55590					0.046021471064932484
RSGLLVSATRS	11	Unmodified	_RSGLLVSATRS_					0	0	0			REV__ENST00000407780.7_1_21:45648256-45648535:-|nuORF	REV__ENST00000407780.7_1_21:45648256-45648535:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	573.8367919921875	2	573.833111	1145.65167	1.9339	0.0011097	2.9755	0.0017075	4.9094	0.0028172	573.8348381216489	85.026	2.6234	85.026	84.431	87.054	0					187	63	4	0	0	0	0.55686	1	9006	9006		48.602	0	1	90195000	+		51277	25455	42450	42481	55591	55591					0.0846700665761091
RSGLSLGAQR	10	Unmodified	_RSGLSLGAQR_					0	0	0		ENST00000589905.1_1_18:61034840-61035077:+|nuORF	ENST00000589905.1_1_18:61034840-61035077:+|nuORF	ENST00000589905.1_1_18:61034840-61035077:+|nuORF	MSMS	OvCa9_classI_Rep3	3	522.8016357421875	2	522.799072	1043.58359	NaN	NaN	NaN	NaN	NaN	NaN	NaN	61.623	1	58.555	58.055	59.055	-3.0685								0	0	0	0.14009	1	2167	2167		32.812	0.85756	1				51278	14099	42451	42482	55592	55592					0.06354181797610181
RSGLTRDAVLA	11	Unmodified	_RSGLTRDAVLA_					0	0	0			REV__ENST00000447600.1_1_1:11159748-11161866:+|nuORF	REV__ENST00000447600.1_1_1:11159748-11161866:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.8099365234375	2	579.833111	1157.65167	-0.50415	-0.00029232	3.4772	0.0020162	2.9731	0.0017239	579.8350756240477	47.23	0.17509	47.23	47.076	47.251	0					5	3	2	0	0	0	0.025378	1	3370	3370		43.651	16.958	1	38754	+		51279	25917	42452	42483	55593	55593					0.07915006657594859
RSGNWRVTL	9	Unmodified	_RSGNWRVTL_					0	0	0			REV__ENSG00000164619|ENST00000649409|BMPER	REV__ENSG00000164619|ENST00000649409|BMPER	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.2958374023438	2	544.801614	1087.58868	-0.38168	-0.00020794	3.5242	0.00192	3.1425	0.001712	544.8033089700962	49.053	0.47857	49.053	48.851	49.33	0					18	10	3	0	0	0	0.027411	1	3620	3620		23.523	5.2606	1	697680	+		51280	21003	42453	42484	55594	55594					0.04838485660229708
RSGPLHCL	8	Unmodified	_RSGPLHCL_					0	0	0			REV__ENST00000541775.5_1_12:7270841-7271144:+|nuORF	REV__ENST00000541775.5_1_12:7270841-7271144:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	441.7861328125	2	441.734354	881.454156	0.25774	0.00011385	1.4032	0.00061986	1.661	0.00073371	441.7374025445894	103.15	1.9348	101.67	101.25	103.19	-1.4743					49	36	2	0	0	0	0.028476	1	7129	7129		7.6903	0	1	31772	+		51281	27375	42454	42485	55595	55595					0.008687089139584714
RSGQQLVEIH	10	Unmodified	_RSGQQLVEIH_					0	0	0		nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1	nc|ENSG00000017260|P98194-3|ATP2C1	nc|ENSG00000017260|P98194-3|ATP2C1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	584.0072021484375	2	583.817461	1165.62037	0.18862	0.00011012	-3.4629	-0.0020217	-3.2743	-0.0019116	584.3171228793344	36.009	1.1973	33.16	32.839	34.037	-2.849					45	23	2	0	0	0	0.027145	1	1181	1181		24.519	7.0512	1	55324			51282	14865	42455	42486	55596	55596					0.04418433623527562
RSGRGRGLRE	10	Unmodified	_RSGRGRGLRE_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MSMS	OvCa9_classI_Rep2	2	572.3278198242188	2	572.326319	1142.63809	-1.7804	-0.001019	3.943	0.0022567	2.1625	0.0012377	572.3282994633946	39.094	1.3403	36.384	36.161	37.501	-2.7097					57	26	4	0	0	0	0.73063	1	1889	1889		27.047	1.4733	1	239310			51283	15389	42456	42487	55597	55597					0.07247193669059016
RSGRGSLLAGP	11	Unmodified	_RSGRGSLLAGP_					0	0	0			REV__ENST00000537833.5_1_12:7250950-7252531:-|nuORF	REV__ENST00000537833.5_1_12:7250950-7252531:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.8065185546875	2	535.806897	1069.59924	-1.5832	-0.00084828	0.96415	0.0005166	-0.61904	-0.00033169	535.8076252711738	46.181	0.88342	43.109	42.824	43.707	-3.0724					46	16	4	0	0	0	0.63561	1	2411	2411		41.427	9.8968	1	313360	+		51284	27314	42457	42488	55598	55598					0.06722468314683283
RSGRIIPKPE	10	Unmodified	_RSGRIIPKPE_					0	0	0		ENSG00000143314|ENST00000361531|MRPL24;ENST00000478899.1_1_1:156707192-156707995:-|nuORF	ENSG00000143314|ENST00000361531|MRPL24	ENSG00000143314|ENST00000361531|MRPL24	MULTI-MSMS	OvCa9_classI_Rep4_	4	576.8468017578125	2	576.846022	1151.67749	-0.18105	-0.00010444	-0.44635	-0.00025747	-0.6274	-0.00036191	576.8457104671397	59.831	1.4327	56.425	56.135	57.568	-3.4059					78	28	4	0	0	0	0.45822	1	4017	4017		60.118	5.3419	1	756220			51285	5031	42458	42489	55599	55599					0.10771900899885622
RSGRPPWP	8	Unmodified	_RSGRPPWP_					0	0	0			REV__ENST00000555446.1_1_14:24025239-24025350:+|nuORF	REV__ENST00000555446.1_1_14:24025239-24025350:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.2777099609375	2	476.759218	951.503883	0.7949	0.00037898	0.41146	0.00019617	1.2064	0.00057514	476.76085411620454	111.58	0.26324	110.07	109.95	110.21	-1.5111					6	4	2	0	0	0	0.028476	1	10296	10296		27.882	0	1	3654.2	+		51286	27543	42459	42490	55600	55600					0.026191599142634914
RSGRSLHIT	9	Unmodified	_RSGRSLHIT_					0	0	0		ENST00000498989.2_1_14:104149443-104149605:-|nuORF	ENST00000498989.2_1_14:104149443-104149605:-|nuORF	ENST00000498989.2_1_14:104149443-104149605:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.7947998046875	2	513.793789	1025.57303	0.6265	0.00032189	1.7602	0.00090437	2.3867	0.0012263	513.7946041614833	128.88	1.2853	127.42	127.15	128.44	-1.4565					55	25	4	0	0	0	0.5811	1	12328	12328		34.173	8.5985	1	193110			51287	12836	42460	42491	55601	55601					0.061261991431820206
RSGRTGRAGK	10	Unmodified	_RSGRTGRAGK_					0	0	0		tr|A0A553SN12|A0A553SN12_NIACIATP-dependentRNAhelicaseDbpAOS=NialliacirculansOX=1397GN=dbpAPE=3SV=1	tr|A0A553SN12|A0A553SN12_NIACIATP-dependentRNAhelicaseDbpAOS=NialliacirculansOX=1397GN=dbpAPE=3SV=1	tr|A0A553SN12|A0A553SN12_NIACIATP-dependentRNAhelicaseDbpAOS=NialliacirculansOX=1397GN=dbpAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.3154907226562	2	523.302313	1044.59007	-0.87024	-0.0004554	1.9253	0.0010075	1.0551	0.00055213	523.3034335851862	55.39	0.20702	55.39	55.273	55.48	0					7	4	2	0	0	0	0.026666	1	4526	4526		59.931	12.273	1	206990			51288	33893	42461	42492	55602	55602					0.0695611974899748
RSGRTGRAGK	10	Unmodified	_RSGRTGRAGK_					0	0	0		tr|A0A553SN12|A0A553SN12_NIACIATP-dependentRNAhelicaseDbpAOS=NialliacirculansOX=1397GN=dbpAPE=3SV=1	tr|A0A553SN12|A0A553SN12_NIACIATP-dependentRNAhelicaseDbpAOS=NialliacirculansOX=1397GN=dbpAPE=3SV=1	tr|A0A553SN12|A0A553SN12_NIACIATP-dependentRNAhelicaseDbpAOS=NialliacirculansOX=1397GN=dbpAPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	523.302313	1044.59007	-0.31442	-0.00016453	8.0208	0.0041973	7.7064	0.0040328	523.3061000413054	57.82	0.99889	55.028	54.526	55.525	-2.792	-0.15902	0.0022434	NaN	59.931	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36469			51289	33893	42461	42492							0.0695611974899748
RSGRTGRAGK	10	Unmodified	_RSGRTGRAGK_					0	0	0		tr|A0A553SN12|A0A553SN12_NIACIATP-dependentRNAhelicaseDbpAOS=NialliacirculansOX=1397GN=dbpAPE=3SV=1	tr|A0A553SN12|A0A553SN12_NIACIATP-dependentRNAhelicaseDbpAOS=NialliacirculansOX=1397GN=dbpAPE=3SV=1	tr|A0A553SN12|A0A553SN12_NIACIATP-dependentRNAhelicaseDbpAOS=NialliacirculansOX=1397GN=dbpAPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	523.302313	1044.59007	-0.63348	-0.0003315	8.0958	0.0042365	7.4623	0.003905	523.3063488367175	58.534	0.90224	55.142	54.651	55.553	-3.392	-0.044336	0.0023218	NaN	59.931	32	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136880			51290	33893	42461	42492							0.0695611974899748
RSGSAAPILV	10	Unmodified	_RSGSAAPILV_					0	0	0			REV__ENST00000479094.5_1_9:96213321-96213438:-|nuORF	REV__ENST00000479094.5_1_9:96213321-96213438:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.78814697265625	2	485.787641	969.56073	-2.4364	-0.0011836	1.4911	0.00072436	-0.94534	-0.00045924	485.78818782578804	88.256	2.2477	85.653	84.874	87.122	-2.6027					99	44	4	0	0	0	0.6349	1	7556	7556		37.812	0	1	1024400	+		51291	26428	42462	42493	55603	55603					0.07473162680139467
RSGSFLLLGI	10	Unmodified	_RSGSFLLLGI_					0	0	0			REV__ENSG00000161996|ENST00000293879|WDR90	REV__ENSG00000161996|ENST00000293879|WDR90	MULTI-MSMS	OvCa9_classI_Rep3	3	531.81640625	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.6349	2	11579	11579;11593		37.812	1.3648	1	178650	+		51292	20716	42463	42494	55604;55605	55604					0.09498308748334239
RSGVEPLDPW	10	Unmodified	_RSGVEPLDPW_					0	0	0		ENST00000519574.1_1_2:219125758-219128073:+|nuORF	ENST00000519574.1_1_2:219125758-219128073:+|nuORF	ENST00000519574.1_1_2:219125758-219128073:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2868041992188	2	578.293288	1154.57202	-7.6021	-0.0043963	1.2846	0.00074285	-6.3176	-0.0036534	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.58067	1	13366	13366		44.377	8.7589	1	1429200			51293	13088	42464	42495	55606	55606					0.0009193998362206912
RSGYKRLN	8	Unmodified	_RSGYKRLN_					0	0	0		nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;DNAH10|p.N3904Vfs*37|1|0.07|ENSG00000197653|chr12:123926777-123926778|-/GGTACAGAGAAGTCCCTGCC|frameshift_variant;DNAH10|p.R2161Nfs*35|1|0.03|ENSG00000197653|chr12:123861095-123861096|-/TAACAGTGAAGGGAAG|frameshift_variant;nc|ENSG00000197653|Q8IVF4-2|DNAH10;DNAH10|p.I1041Lfs*26|1|0.09|ENSG00000197653|chr12:123813493-123813493|A/-|frameshift_variant;ENST00000467219.5_1_12:124265674-124298205:+|nuORF	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.8041076660156	2	497.283057	992.551562	-0.040136	-1.9959E-05	2.7178	0.0013515	2.6777	0.0013316	497.2841415206264	64.961	0.63728	64.961	64.672	65.309	0					24	15	2	0	0	0	0.028476	1	5915	5915		58.782	17.355	1	289930			51294	8733	42465	42496	55607	55607					0.054988141144804104
RSHAGYQTI	9	Unmodified	_RSHAGYQTI_					0	0	0		ENSG00000185896|ENST00000332556|LAMP1;nc|ENSG00000185896|P11279-2|LAMP1;ENST00000472564.1_1_13:113976589-113976733:+|nuORF	ENSG00000185896|ENST00000332556|LAMP1	ENSG00000185896|ENST00000332556|LAMP1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.7643432617188	2	516.764697	1031.51484	-0.71166	-0.00036776	-0.0066441	-3.4334E-06	-0.7183	-0.00037119	516.7647230031616	35.962	0.68974	35.962	35.753	36.442	0					36	14	3	0	0	0	0.14445	1	1870	1870		85.862	13.984	1	4351700			51295	8298	42466	42497	55608	55608					0.0003451749792020564
RSHFVHYI	8	Unmodified	_RSHFVHYI_					0	0	0			REV__ENSG00000185803|ENST00000643944|SLC52A2	REV__ENSG00000185803|ENST00000643944|SLC52A2	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.8056640625	2	529.780151	1057.54575	0.73015	0.00038682	-2.0815	-0.0011027	-1.3513	-0.00071589	530.281231281456	87.513	1.7223	86.082	85.642	87.365	-1.4311					46	34	2	0	0	0	0.028476	1	7584	7584		24.203	10.749	1	89744	+		51296	22531	42467	42498	55609	55609					0.019277156028010722
RSHLPVFAFL	10	Unmodified	_RSHLPVFAFL_					0	0	0		L1PA15_dup4761|chrX:56137796-56140776:+|1.2704796762244717|0.2808252408673861|2.18|428.0|111|1|anti-sense	L1PA15_dup4761|chrX:56137796-56140776:+|1.2704796762244717|0.2808252408673861|2.18|428.0|111|1|anti-sense	L1PA15_dup4761|chrX:56137796-56140776:+|1.2704796762244717|0.2808252408673861|2.18|428.0|111|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.8158569335938	2	593.840208	1185.66586	1.5967	0.00094817	-0.601	-0.0003569	0.99567	0.00059127	593.8394730716541	78.91	0.72644	78.91	78.625	79.352	0					20	17	2	0	0	0	0.026871	1	8034	8034		29.15	2.1022	1	581320			51297	14662	42468	42499	55610	55610					0.08045703876564403
RSHPRLLPAP	10	Unmodified	_RSHPRLLPAP_					0	0	0		ENST00000497690.1_1_2:71295524-71295803:+|nuORF	ENST00000497690.1_1_2:71295524-71295803:+|nuORF	ENST00000497690.1_1_2:71295524-71295803:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	573.2861328125	2	572.340907	1142.66726	-2.1539	-0.0012328	2.0628	0.0011806	-0.091117	-5.215E-05	572.341861725668	33.967	0.9379	31.257	30.873	31.811	-2.7097					41	18	3	0	0	0	0.02709	1	1319	1319		22.58	0.61977	1	48298			51298	12813	42469	42500	55611	55611					0.10163337965332175
RSHWKWIN	8	Unmodified	_RSHWKWIN_					0	0	0		ENST00000518622.5_1_19:48714695-48714965:-|nuORF	ENST00000518622.5_1_19:48714695-48714965:-|nuORF	ENST00000518622.5_1_19:48714695-48714965:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.289306640625	2	563.798875	1125.5832	2.8985	0.0016342	-2.2366	-0.001261	0.66193	0.00037319	563.7977080293505	84.516	0.62077	84.516	84.261	84.882	0					26	14	3	0	0	0	0.028476	1	8797	8797		45.952	0	1	744590			51299	13074	42470	42501	55612	55612					0.025428068684277605
RSIDLKILEL	10	Unmodified	_RSIDLKILEL_					0	0	0			REV__ENSG00000108239|ENST00000225235|TBC1D12	REV__ENSG00000108239|ENST00000225235|TBC1D12	MULTI-MSMS	OvCa99_classI_Rep5	1	600.3720092773438	2	600.371538	1198.72852	2.3284	0.0013979	-4.154	-0.0024939	-1.8255	-0.001096	600.3692429881114	79.922	0.68307	79.922	79.509	80.192	0					26	16	2	0	0	0	0.44431	1	8155	8155		62.107	10.58	1	2131600	+		51300	17877	42471	42502	55613	55613					0.13710805154119043
RSIFGSLVEPS	11	Unmodified	_RSIFGSLVEPS_					0	0	0			REV__ENSG00000136383|ENST00000258888|ALPK3	REV__ENSG00000136383|ENST00000258888|ALPK3	MSMS	OvCa9_classI_Rep2	2	596.321533203125	2	596.322045	1190.62954	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.714	1	24.005	23.505	24.505	-2.7097								0	0	0	0.19474	1	400	400		12.207	1.3411	1		+		51301	19384	42472	42503	55614	55614					0.04184782189190628
RSIGMESSV	9	Unmodified	_RSIGMESSV_					0	0	0			REV__ENSG00000198842|ENST00000361200|STYXL2	REV__ENSG00000198842|ENST00000361200|STYXL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.7654113769531	2	483.239667	964.46478	-0.41704	-0.00020153	-2.897	-0.0014	-3.3141	-0.0016015	483.23828433976774	54.484	0.42232	54.484	54.253	54.675	0					13	9	3	0	0	0	0.027461	1	4416	4416		49.442	13.823	1	102690	+		51302	23077	42473	42504	55615	55615					-0.01887353222252841
RSIIGFLQA	9	Unmodified	_RSIIGFLQA_					0	0	0		ENSG00000122008|ENST00000241436|POLK;nc|ENSG00000122008|Q9UBT6-8|POLK;nc|ENSG00000122008|Q9UBT6-3|POLK	ENSG00000122008|ENST00000241436|POLK	ENSG00000122008|ENST00000241436|POLK	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.7679443359375	2	502.798009	1003.58147	-2.6257	-0.0013202	-1.6196	-0.00081433	-4.2453	-0.0021345	502.7971513142043	49.68	0.56962	46.539	46.301	46.871	-3.1416					15	10	2	0	0	0	0.027462	1	2800	2800		27.047	8.7229	1	27124			51303	3510	42474	42505	55616	55616					0.07981753059800667
RSIKEPVALL	10	Unmodified	_RSIKEPVALL_					0	0	0		ENSG00000162618|ENST00000370742|ADGRL4	ENSG00000162618|ENST00000370742|ADGRL4	ENSG00000162618|ENST00000370742|ADGRL4	MULTI-MSMS	OvCa9_classI_Rep2	2	563.3540649414062	2	563.353148	1124.69174	-0.51442	-0.0002898	-0.73977	-0.00041675	-1.2542	-0.00070655	563.3531834496299	116.13	2.03	116.01	115.64	117.67	-0.11777					126	40	5	0	0	0	0.40664	2	11115	11115;11146		67.494	11.06	1	2302900			51304	6204	42475	42506	55617;55618	55617					0.13438553328182934
RSIKEPVALL	10	Unmodified	_RSIKEPVALL_					0	0	0		ENSG00000162618|ENST00000370742|ADGRL4	ENSG00000162618|ENST00000370742|ADGRL4	ENSG00000162618|ENST00000370742|ADGRL4	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.3525390625	2	563.353148	1124.69174	0.72344	0.00040755	-1.5701	-0.00088453	-0.84668	-0.00047698	563.3523799001858	117.47	3.3994	116.13	115.53	118.93	-1.3452					169	64	5	0	0	0	0.40664	1	11031	11031		67.494	14.557	1	2980000			51305	6204	42475	42506	55619	55619					0.13438553328182934
RSIKERLMKLL	11	Unmodified	_RSIKERLMKLL_					0	0	0		ENSG00000185774|ENST00000382152|KCNIP4	ENSG00000185774|ENST00000382152|KCNIP4	ENSG00000185774|ENST00000382152|KCNIP4	MULTI-SECPEP	OvCa9_classI_Rep3	3	462.32476806640625	3	462.958635	1385.85407	-1.0622	-0.00049174	-4.3685	-0.0020224	-5.4307	-0.0025142	463.29027614725726	83.012	1.2281	80.715	80.039	81.267	-2.2963					41	24	2	0	0	0	0.026277	1	4653	4653		5.4129	0	1	66384			51306	8281	42476	42507	55620	55620					0.17658193738657246
RSIKGSQLK	9	Unmodified	_RSIKGSQLK_					0	0	0			REV__ENST00000459799.1_1_1:151140554-151141558:+|nuORF	REV__ENST00000459799.1_1_1:151140554-151141558:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.81646728515625	2	508.81419	1015.61383	-0.3083	-0.00015687	2.4682	0.0012559	2.1599	0.001099	508.81539821309786	75.996	4.7929	73.057	72.594	77.387	-2.9389					288	99	5	0	0	0	0.21231	1	5995	5995		74.255	7.8258	1	9248900	+		51307	20813	42477	42508	55621	55621					0.10664540462801142
RSIKIKLPN	9	Unmodified	_RSIKIKLPN_					0	0	0			REV__ENST00000445741.5_1_8:119391914-119593084:-|nuORF	REV__ENST00000445741.5_1_8:119391914-119593084:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.82275390625	2	534.848033	1067.68151	0.7776	0.0004159	-0.16335	-8.7367E-05	0.61425	0.00032853	535.3491778179099	88.252	0.29677	86.885	86.74	87.037	-1.3676					6	5	2	0	0	0	0.027462	1	7735	7735		24.519	0.31644	1	6547.2	+		51308	25891	42478	42509	55622	55622					0.1503799039360274
RSIKKDVK	8	Unmodified	_RSIKKDVK_					0	0	0			REV__tr|A0A553SQU7|A0A553SQU7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07310PE=4SV=1	REV__tr|A0A553SQU7|A0A553SQU7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07310PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	487.3116760253906	2	487.311284	972.608014	-0.029292	-1.4274E-05	-0.13705	-6.6784E-05	-0.16634	-8.1058E-05	487.31109838700786	32.179	0.64601	32.179	31.956	32.602	0					20	12	3	0	0	0	0.6345	1	1387	1387		56.721	14.325	1	106300	+		51309	30664	42479	42510	55623	55623					0.12061441951129837
RSILGPANIK	10	Unmodified	_RSILGPANIK_					0	0	0		ENST00000494673.1_1_6:31243358-31244615:+|nuORF	ENST00000494673.1_1_6:31243358-31244615:+|nuORF	ENST00000494673.1_1_6:31243358-31244615:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.2506103515625	2	534.82984	1067.64513	-0.70912	-0.00037926	-0.14619	-7.8189E-05	-0.85531	-0.00045745	534.8298213799919	59.594	0.46194	59.594	59.34	59.802	0					19	11	2	0	0	0	0.026602	1	5159	5159		65.465	29.847	1	504490			51310	12760	42480	42511	55624	55624					0.11401113496890503
RSILKWTL	8	Unmodified	_RSILKWTL_					0	0	0			REV__chrX:52864900-52866433|101|17.85|0.35|5.68|-|0|XAGE3,XAGE3|1	REV__chrX:52864900-52866433|101|17.85|0.35|5.68|-|0|XAGE3,XAGE3|1	MULTI-MSMS	OvCa9_classI_Rep2	2	508.81500244140625	2	508.816202	1015.61785	-0.71731	-0.00036498	-1.1422	-0.00058115	-1.8595	-0.00094613	508.8155586093284	74.871	5.3666	72.9	72.481	77.848	-1.9711					298	103	5	0	0	0	0.50747	1	6123	6123		76.774	4.8967	1	7287100	+		51311	16139	42481	42512	55625	55625					0.11066629956508223
RSILLGLLL	9	Unmodified	_RSILLGLLL_					0	0	0		ENST00000495483.5_2_1:161137139-161146869:+|nuORF;ENSG00000143224|ENST00000367999|PPOX	ENST00000495483.5_2_1:161137139-161146869:+|nuORF	ENST00000495483.5_2_1:161137139-161146869:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	499.3432312011719	2	499.342052	996.669552	1.8078	0.00090272	0.14997	7.4887E-05	1.9578	0.00097761	499.3419985600127	137.63	1.8206	137.63	137.35	139.17	0					73	38	3	0	0	0	0.5811	1	16101	16101		34.173	1.3601	1	204070			51312	12778	42482	42513	55626	55626					0.17108373650421527
RSILNRLW	8	Unmodified	_RSILNRLW_					0	0	0			REV__chr3:190883179-190892346|178|19.86|0.0|20.92|-|1|None,GMNC|1	REV__chr3:190883179-190892346|178|19.86|0.0|20.92|-|1|None,GMNC|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.2833862304688	2	529.3169	1056.61925	-0.72571	-0.00038413	0.79898	0.00042291	0.073268	3.8782E-05	529.3166360926688	90.549	0.51209	87.974	87.75	88.262	-2.575					12	9	2	0	0	0	0.028476	1	7803	7803		12.207	0	1	54035	+		51313	16042	42483	42514	55627	55627					0.09320264045254589
RSIQAVPDL	9	Unmodified	_RSIQAVPDL_					0	0	0		ENSG00000100739|ENST00000216629|BDKRB1	ENSG00000100739|ENST00000216629|BDKRB1	ENSG00000100739|ENST00000216629|BDKRB1	MULTI-MSMS	OvCa99_classI_Rep5	1	499.7892761230469	2	499.785099	997.555644	0.044895	2.2438E-05	0.16802	8.3975E-05	0.21292	0.00010641	499.78496069550164	62.793	0.39486	62.793	62.621	63.016	0					14	9	2	0	0	0	0.46356	1	5624	5624		45.972	0.020292	1	1054300			51314	2101	42484	42515	55628	55628					0.056768588175032164
RSIQLVKV	8	Unmodified	_RSIQLVKV_					0	0	0		tr|A0A553SP02|A0A553SP02_NIACIFlagellarbiosynthesisproteinFliZOS=NialliacirculansOX=1397GN=CEQ21_25435PE=4SV=1	tr|A0A553SP02|A0A553SP02_NIACIFlagellarbiosynthesisproteinFliZOS=NialliacirculansOX=1397GN=CEQ21_25435PE=4SV=1	tr|A0A553SP02|A0A553SP02_NIACIFlagellarbiosynthesisproteinFliZOS=NialliacirculansOX=1397GN=CEQ21_25435PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.8096923828125	2	471.808377	941.6022	1.4167	0.00066842	-1.6981	-0.00080116	-0.28134	-0.00013274	471.80746933293995	68.283	1.3258	64.793	64.526	65.852	-3.4902					61	26	4	0	0	0	0.70469	1	5056	5056		42.396	1.618	1	523870			51315	33986	42485	42516	55629	55629					0.12906343439465218
RSISESILP	9	Unmodified	_RSISESILP_					0	0	0		ENST00000502974.1_1_4:74904133-74904340:-|nuORF	ENST00000502974.1_1_4:74904133-74904340:-|nuORF	ENST00000502974.1_1_4:74904133-74904340:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.31866455078125	2	501.284931	1000.55531	-0.39775	-0.00019939	0.37569	0.00018833	-0.022055	-1.1056E-05	501.28484036792025	33.46	0.687	33.46	33.186	33.873	0					22	13	4	0	0	0	0.027462	1	1578	1578		29.15	0	1	164760			51316	12858	42486	42517	55630	55630					0.05505439097669296
RSISRRRRRWW	11	Unmodified	_RSISRRRRRWW_					0	0	0			REV__ENSG00000154736|ENST00000284987|ADAMTS5	REV__ENSG00000154736|ENST00000284987|ADAMTS5	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.2811279296875	3	538.981936	1613.92398	-0.035735	-1.926E-05	0.6683	0.0003602	0.63256	0.00034094	538.9817191337936	62.102	0.4245	62.102	61.953	62.378	0					18	9	3	0	0	0	0.026448	1	5522	5522		9.2118	3.513	1	420160	+		51317	20395	42487	42518	55631	55631					0.14157253242137813
RSITKKAF	8	Unmodified	_RSITKKAF_					0	0	0		ENSG00000139263|ENST00000320743|LRIG3;nc|ENSG00000139263|Q6UXM1-2|LRIG3	ENSG00000139263|ENST00000320743|LRIG3	ENSG00000139263|ENST00000320743|LRIG3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.7050476074219	2	475.792727	949.5709	1.1819	0.00056235	-1.6808	-0.00079971	-0.49888	-0.00023736	475.79188379179567	84.397	0.79173	81.735	81.504	82.295	-2.6629					21	16	2	0	0	0	0.028476	1	7040	7040		37.159	0.13063	1	54260			51318	4759	42488	42519	55632	55632					0.09409770405375184
RSITKKAF	8	Unmodified	_RSITKKAF_					0	0	0		ENSG00000139263|ENST00000320743|LRIG3;nc|ENSG00000139263|Q6UXM1-2|LRIG3	ENSG00000139263|ENST00000320743|LRIG3	ENSG00000139263|ENST00000320743|LRIG3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	475.792727	949.5709	-0.30399	-0.00014464	-0.12091	-5.7527E-05	-0.4249	-0.00020216	475.7926467511337	83.261	0.85325	81.662	81.369	82.222	-1.5988	0.018447	0.00042755	NaN	37.159	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26533			51319	4759	42488	42519							0.09409770405375184
RSITKKAF	8	Unmodified	_RSITKKAF_					0	0	0		ENSG00000139263|ENST00000320743|LRIG3;nc|ENSG00000139263|Q6UXM1-2|LRIG3	ENSG00000139263|ENST00000320743|LRIG3	ENSG00000139263|ENST00000320743|LRIG3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	475.792727	949.5709	-0.13615	-6.4778E-05	-0.14205	-6.7587E-05	-0.2782	-0.00013236	475.7925792567878	83.795	0.81196	81.534	81.302	82.114	-2.261	-0.10961	0.00040743	NaN	37.159	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60289			51320	4759	42488	42519							0.09409770405375184
RSIVAASPIVI	11	Unmodified	_RSIVAASPIVI_					0	0	0			REV__ENSG00000162594|ENST00000347310|IL23R	REV__ENSG00000162594|ENST00000347310|IL23R	MULTI-MSMS	OvCa9_classI_Rep2	2	563.3511352539062	2	563.353148	1124.69174	-0.51442	-0.0002898	-0.73977	-0.00041675	-1.2542	-0.00070655	563.3531834496299	116.13	2.03	116.01	115.64	117.67	-0.11777					126	40	5	0	0	0	0.71191	1	11167	11167		25.574	1.3713	1	2302900	+		51321	20750	42489	42520	55633	55633					0.13438553328182934
RSIVKLPIV	9	Unmodified	_RSIVKLPIV_					0	0	0			REV__ENSG00000134007|ENST00000256389|ADAM20	REV__ENSG00000134007|ENST00000256389|ADAM20	MULTI-SECPEP	OvCa9_classI_Rep3	3	512.8115844726562	2	512.847502	1023.68045	-0.43202	-0.00022156	1.8104	0.00092844	1.3783	0.00070688	512.8483832831099	94.517	0.25079	92.622	92.511	92.762	-1.8956					6	4	2	0	0	0	0.027462	1	6104	6104		32.812	1.2826	1	7579.9	+		51322	19168	42490	42521	55634	55634					0.16955776024701663
RSIVQASLTE	10	Unmodified	_RSIVQASLTE_					0	0	0			REV__tr|A0A553STR8|A0A553STR8_NIACIAlpha/betahydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05410PE=4SV=1	REV__tr|A0A553STR8|A0A553STR8_NIACIAlpha/betahydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05410PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	552.306640625	2	552.306395	1102.59824	-0.62094	-0.00034295	0.50353	0.0002781	-0.11741	-6.4846E-05	552.3065331432579	38.23	0.54531	38.23	37.94	38.486	0					33	11	5	0	0	0	0.52439	1	2155	2155		51.193	5.2204	1	690710	+		51323	31003	42491	42522	55635	55635					0.05104209155069839
RSIYDDISSL	10	Unmodified	_RSIYDDISSL_					0	0	0		ENST00000422734.1_1_10:24446874-24447108:+|nuORF	ENST00000422734.1_1_10:24446874-24447108:+|nuORF	ENST00000422734.1_1_10:24446874-24447108:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.8092651367188	2	584.79586	1167.57717	1.8071	0.0010568	0.071045	4.1547E-05	1.8781	0.0010983	584.7958638652678	110.81	0.57474	110.81	110.54	111.11	0					29	12	3	0	0	0	0.026782	1	12583	12583		45.972	6.7194	1	474680			51324	11699	42492	42523	55636	55636					8.199055582736037E-05
RSKARWGNG	9	Unmodified	_RSKARWGNG_					0	0	0			REV__ENST00000565992.1_1_16:1116342-1123095:-|nuORF	REV__ENST00000565992.1_1_16:1116342-1123095:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.2432861328125	2	516.278306	1030.54206	-1.0274	-0.00053044	-0.69693	-0.00035981	-1.7244	-0.00089025	516.277896236651	52.564	1.085	49.751	49.246	50.331	-2.8129					32	21	2	0	0	0	0.027462	1	3454	3454		14.137	0	1	51867	+		51325	27694	42493	42524	55637	55637					0.028010458289600138
RSKEEPCEEG	10	Unmodified	_RSKEEPCEEG_					0	0	0		ENST00000539361.1_1_11:61551728-61551962:+|nuORF;nc|ENSG00000124920|Q9Y2G1-2|MYRF;ENSG00000124920|ENST00000278836|MYRF	ENST00000539361.1_1_11:61551728-61551962:+|nuORF	ENST00000539361.1_1_11:61551728-61551962:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.2952270507812	2	582.253502	1162.49245	-0.68448	-0.00039854	-4.3948	-0.0025589	-5.0793	-0.0029574	582.2508314221712	51.097	2.1008	51.097	50.509	52.61	0					94	48	2	0	0	0	0.026915	1	4129	4129		14.865	0.72775	1	399950			51326	3686	42494	42525	55638	55638					-0.0822949475268615
RSKFRVLL	8	Unmodified	_RSKFRVLL_					0	0	0			REV__nc|ENSG00000143061|O75054-2|IGSF3	REV__nc|ENSG00000143061|O75054-2|IGSF3	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.26708984375	2	509.829643	1017.64473	-0.21903	-0.00011167	0.32205	0.00016419	0.10302	5.2525E-05	509.8297242078868	69.455	0.57154	69.455	69.184	69.756	0					22	13	2	0	0	0	0.028476	1	6638	6638		35.618	0	1	778580	+		51327	19812	42495	42526	55639	55639					0.1366173856771411
RSKGHFLQL	9	Unmodified	_RSKGHFLQL_					0	0	0			REV__ENSG00000099937|ENST00000215727|SERPIND1	REV__ENSG00000099937|ENST00000215727|SERPIND1	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.8165893554688	2	543.314358	1084.61416	-0.033271	-1.8077E-05	0.4807	0.00026117	0.44743	0.00024309	543.313491121596	113.69	0.93665	112.24	111.95	112.89	-1.4461					38	18	4	0	0	0	0.38969	1	10554	10554		52.937	1.4089	1	105730	+	+	51328	17342	42496	42527	55640	55640					0.07523960182675182
RSKGHFLQL	9	Unmodified	_RSKGHFLQL_					0	0	0			REV__ENSG00000099937|ENST00000215727|SERPIND1	REV__ENSG00000099937|ENST00000215727|SERPIND1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	543.314358	1084.61416	1.1237	0.00061055	-0.62812	-0.00034126	0.49563	0.00026928	543.3129558779157	113.31	1.0244	112.23	112.01	113.03	-1.0753	-0.0033362	-0.00066113	NaN	52.937	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73455	+	+	51329	17342	42496	42527							0.07523960182675182
RSKGHFLQL	9	Unmodified	_RSKGHFLQL_					0	0	0			REV__ENSG00000099937|ENST00000215727|SERPIND1	REV__ENSG00000099937|ENST00000215727|SERPIND1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	543.314358	1084.61416	-0.033271	-1.8077E-05	0.4807	0.00026117	0.44743	0.00024309	543.313491121596	113.69	0.93665	112.24	111.95	112.89	-1.4461	0.0033362	0.00054374	NaN	52.937	38	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105730	+	+	51330	17342	42496	42527							0.07523960182675182
RSKGSYVCL	9	Unmodified	_RSKGSYVCL_					0	0	0		L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|232|1|anti-sense	L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|232|1|anti-sense	L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|232|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.32537841796875	2	506.765852	1011.51715	-1.1558	-0.00058574	-1.9866	-0.0010067	-3.1424	-0.0015925	506.76480667784534	75.841	0.50813	73.47	73.112	73.62	-2.3715					20	9	3	0	0	0	0.027433	1	3872	3872		64.207	16.292	1	113840			51331	14564	42497	42528	55641	55641					0.011852299113456866
RSKKGKKK	8	Unmodified	_RSKKGKKK_					0	0	0			REV__ENSG00000197724|ENST00000359246|PHF2	REV__ENSG00000197724|ENST00000359246|PHF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.27423095703125	2	480.327268	958.639983	2.2362	0.0010741	2.2277	0.00107	4.4639	0.0021441	480.32850191643416	92.865	0.20541	92.865	92.721	92.926	0					5	4	2	0	0	0	0.028476	1	10036	10036		1.3276	0	1	94967	+		51332	22946	42498	42529	55642	55642					0.15900854424944555
RSKLGRIWPT	10	Unmodified	_RSKLGRIWPT_					0	0	0		ENST00000340437.8_1_11:61171089-61171380:-|nuORF	ENST00000340437.8_1_11:61171089-61171380:-|nuORF	ENST00000340437.8_1_11:61171089-61171380:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	406.2019958496094	3	405.243652	1212.70913	-0.17438	-7.0665E-05	-0.37011	-0.00014998	-0.54448	-0.00022065	405.2436880865437	49.071	0.72691	45.929	45.78	46.507	-3.1416					12	7	2	0	0	0	0.027006	1	2769	2769		13.508	0	1	37241			51333	10558	42499	42530	55643	55643					0.11127893653838328
RSKLIIIK	8	Unmodified	_RSKLIIIK_					0	0	0			REV__tr|A0A7D6ZS68|A0A7D6ZS68_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06550PE=4SV=1	REV__tr|A0A7D6ZS68|A0A7D6ZS68_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06550PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	485.84368896484375	2	485.84222	969.669886	0.67311	0.00032703	-0.97898	-0.00047563	-0.30587	-0.0001486	485.8415903573046	66.876	0.47342	66.876	66.7	67.173	0					24	11	3	0	0	0	0.57734	1	6236	6236		68.787	2.3575	1	1979600	+		51334	32178	42500	42531	55644	55644					0.1838379337028755
RSKLIMAGI	9	Unmodified	_RSKLIMAGI_					0	0	0		tr|A0A7D6W185|A0A7D6W185_9CLOTIsochorismatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02240PE=4SV=1	tr|A0A7D6W185|A0A7D6W185_9CLOTIsochorismatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02240PE=4SV=1	tr|A0A7D6W185|A0A7D6W185_9CLOTIsochorismatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02240PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.80694580078125	2	494.802237	987.589921	0.89967	0.00044516	1.3476	0.00066679	2.2473	0.001112	494.804728495101	97.443	1.0135	95.064	94.611	95.624	-2.3786					71	19	6	0	0	0	0.21395	1	8646	8646		73.975	2.679	1	366760			51335	35403	42501	42532	55645	55645					0.09562983704768158
RSKLLTKIH	9	Unmodified	_RSKLLTKIH_					0	0	0		ENSG00000214814|ENST00000522917|FER1L6;FER1L6|p.F286Lfs*16|1|0.05|ENSG00000214814|chr8:123976068-123976069|-/T|frameshift_variant	ENSG00000214814|ENST00000522917|FER1L6	ENSG00000214814|ENST00000522917|FER1L6	MULTI-MSMS	OvCa9_classI_Rep2	2	548.3536376953125	2	548.353483	1094.69241	0.45545	0.00024975	-1.1823	-0.0006483	-0.72683	-0.00039856	548.3528407681815	96.64	1.7696	95.682	95.381	97.15	-0.95857					98	35	5	0	0	0	0.58322	1	8724	8724		33.922	2.3918	1	468860			51336	9183	42502	42533	55646	55646					0.14885392767882877
RSKLQEIDI	9	Unmodified	_RSKLQEIDI_					0	0	0		ENSG00000205726|ENST00000381318|ITSN1;nc|ENSG00000205726|Q15811-13|ITSN1;nc|ENSG00000205726|Q15811-8|ITSN1;nc|ENSG00000205726|Q15811-9|ITSN1;nc|ENSG00000205726|Q15811-4|ITSN1;ITSN1|p.S1555Tfs*2|1|0.04|ENSG00000205726|chr21:33883659-33883659|G/-|frameshift_variant;ITSN1|p.V1253Sfs*9|1|0.27|ENSG00000205726|chr21:33856831-33856849|GTGAATGACCTGCAGCTGG/-|frameshift_variant;CON__ENSEMBL:ENSBTAP00000001528;nc|ENSG00000205726|Q15811-2|ITSN1;nc|ENSG00000205726|Q15811-7|ITSN1;nc|ENSG00000205726|Q15811-10|ITSN1;nc|ENSG00000205726|Q15811-3|ITSN1;nc|ENSG00000205726|Q15811-11|ITSN1;nc|ENSG00000205726|Q15811-12|ITSN1;nc|ENSG00000205726|Q15811-5|ITSN1;nc|ENSG00000205726|Q15811-6|ITSN1;ITSN1|p.G971Wfs*19|1|0.03|ENSG00000205726|chr21:33818449-33818450|-/T|frameshift_variant	ENSG00000205726|ENST00000381318|ITSN1	ENSG00000205726|ENST00000381318|ITSN1	MULTI-MSMS	OvCa99_classI_Rep5	1	551.3165893554688	2	551.316763	1100.61897	-1.017	-0.00056071	0.3541	0.00019522	-0.66294	-0.00036549	551.3169361591595	49.921	1.4003	49.921	49.593	50.993	0					83	31	4	0	0	0	0.3249	1	3799	3799		60.118	0	1	10286000		+	51337	602	42503	42534	55647	55647					0.07268799534745085
RSKQERIAR	9	Unmodified	_RSKQERIAR_					0	0	0		tr|A0A7D7A6E3|A0A7D7A6E3_9CLOTImmA/IrrEfamilymetallo-endopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10025PE=4SV=1	tr|A0A7D7A6E3|A0A7D7A6E3_9CLOTImmA/IrrEfamilymetallo-endopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10025PE=4SV=1	tr|A0A7D7A6E3|A0A7D7A6E3_9CLOTImmA/IrrEfamilymetallo-endopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10025PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.8311157226562	2	572.338895	1142.66324	0.026858	1.5372E-05	0.68435	0.00039168	0.71121	0.00040705	572.3391034517549	57.415	0.51072	57.415	57.264	57.775	0					24	11	3	0	0	0	0.027453	1	4814	4814		30.318	0	1	1364000			51338	36192	42504	42535	55648	55648					0.09761248471613726
RSKRKEFTS	9	Unmodified	_RSKRKEFTS_					0	0	0			REV__ENSG00000072786|ENST00000176763|STK10	REV__ENSG00000072786|ENST00000176763|STK10	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2485961914062	2	569.820004	1137.62546	-0.16058	-9.1504E-05	-1.1116	-0.0006334	-1.2722	-0.0007249	569.8194617708607	30.261	0.49542	30.261	30.086	30.582	0					16	9	3	0	0	0	0.027462	1	1146	1146		35.618	5.3006	1	26660	+		51339	16923	42505	42536	55649	55649					0.06214737486152444
RSKRLGPL	8	Unmodified	_RSKRLGPL_					0	0	0			REV__ENST00000339865.9_2_11:11863015-11863387:+|nuORF	REV__ENST00000339865.9_2_11:11863015-11863387:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.7991638183594	2	463.798343	925.582134	-1.4154	-0.00065646	0.49319	0.00022874	-0.92221	-0.00042772	463.7985594679424	71.828	2.2794	68.371	68.074	70.354	-3.4563					134	46	4	0	0	0	0.65062	1	5566	5566		53.351	1.0523	1	2935000	+		51340	24619	42506	42537	55650	55650					0.11636592499519338
RSKRQNAL	8	Unmodified	_RSKRQNAL_					0	0	0			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.8074035644531	2	486.788507	971.562461	0.079191	3.8549E-05	2.864	0.0013942	2.9432	0.0014327	486.7896394778206	56.39	1.4195	53.095	52.769	54.188	-3.2944					61	27	4	0	0	0	0.028476	1	3691	3691		37.159	12.956	1	257380	+		51341	19163	42507	42538	55651	55651					0.07554216488756538
RSKRRSND	8	Unmodified	_RSKRRSND_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.936767578125	2	509.778671	1017.54279	0.42137	0.0002148	-0.82676	-0.00042146	-0.40539	-0.00020666	509.7784219909649	73.864	0.68834	73.864	73.678	74.366	0					25	17	2	0	0	0	0.028476	1	7246	7246		14.137	0	1	689850	+		51342	16672	42508	42539	55652	55652					0.03471840477993737
RSKSSLLPN	9	Unmodified	_RSKSSLLPN_					0	0	0			REV__nc|ENSG00000033122|Q96NW7-2|LRRC7	REV__nc|ENSG00000033122|Q96NW7-2|LRRC7	MULTI-MSMS	OvCa9_classI_Rep2	2	501.28857421875	2	501.290548	1000.56654	-0.80197	-0.00040202	0.50048	0.00025089	-0.30149	-0.00015113	501.2906816095173	135.63	4.8104	135.4	133.71	138.52	-0.22697					221	98	3	0	0	0	0.69403	1	13603	13603		19.997	1.6724	1	70595	+		51343	16594	42509	42540	55653	55653					0.06628261191804086
RSKVHADKL	9	Unmodified	_RSKVHADKL_					0	0	0			REV__ENSG00000057704|ENST00000261226|TMCC3	REV__ENSG00000057704|ENST00000261226|TMCC3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.3042602539062	2	527.311815	1052.60908	-1.7744	-0.00093564	4.1271	0.0021763	2.3528	0.0012407	527.3137620145241	95.721	0.60432	93.295	93.055	93.659	-2.4256					20	11	2	0	0	0	0.027462	1	8458	8458		39.253	11.371	1	17341	+		51344	16722	42510	42541	55654	55654					0.08487656320039605
RSKVHADKL	9	Unmodified	_RSKVHADKL_					0	0	0			REV__ENSG00000057704|ENST00000261226|TMCC3	REV__ENSG00000057704|ENST00000261226|TMCC3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	527.311815	1052.60908	-1.077	-0.00056792	2.9659	0.001564	1.8889	0.00099605	527.3129010213759	95.164	0.65108	93.269	92.914	93.565	-1.8956	-0.013459	-0.00091818	NaN	44.377	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14829	+		51345	16722	42510	42541							0.08487656320039605
RSKVVQKPS	9	Unmodified	_RSKVVQKPS_					0	0	0		ENSG00000130347|ENST00000369063|RTN4IP1;nc|ENSG00000130347|Q8WWV3-3|RTN4IP1	ENSG00000130347|ENST00000369063|RTN4IP1	ENSG00000130347|ENST00000369063|RTN4IP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.8112182617188	2	514.81419	1027.61383	-0.72983	-0.00037573	-0.099048	-5.0991E-05	-0.82888	-0.00042672	514.8135812682111	56.356	0.94182	53.552	53.077	54.018	-2.804					21	18	2	0	0	0	0.027462	1	3970	3970		27.882	1.0861	1	15560			51346	3981	42511	42542	55655	55655					0.10112540462819197
RSLAADLGIN	10	Unmodified	_RSLAADLGIN_					0	0	0		tr|A0A553SHG6|A0A553SHG6_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_12870PE=4SV=1	tr|A0A553SHG6|A0A553SHG6_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_12870PE=4SV=1	tr|A0A553SHG6|A0A553SHG6_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_12870PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	515.286376953125	2	515.288005	1028.56146	1.6626	0.00085671	-1.8275	-0.00094167	-0.16488	-8.4961E-05	515.2869087347317	28.904	0.97584	26.195	25.999	26.975	-2.7097					44	20	3	0	0	0	0.6349	1	651	651		37.812	4.9991	1	79121			51347	33270	42512	42543	55656	55656					0.04831957329201941
RSLAIYEV	8	Unmodified	_RSLAIYEV_					0	0	0			REV__nc|ENSG00000102763|A3KMH1-2|VWA8	REV__nc|ENSG00000102763|A3KMH1-2|VWA8	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.81317138671875	2	475.768917	949.523281	3.0428	0.0014476	-2.0587	-0.00097947	0.98403	0.00046817	475.76837048887137	89.605	0.41061	89.605	89.394	89.804	0					19	9	3	0	0	0	0.028476	1	9578	9578		23.523	0	1	323170	+		51348	17570	42513	42544	55657	55657					0.046500714145167876
RSLALRSTI	9	Unmodified	_RSLALRSTI_					0	0	0		ENST00000415922.6_1_6:26659691-26659826:-|nuORF	ENST00000415922.6_1_6:26659691-26659826:-|nuORF	ENST00000415922.6_1_6:26659691-26659826:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.81707763671875	2	508.81419	1015.61383	-0.3083	-0.00015687	2.4682	0.0012559	2.1599	0.001099	508.81539821309786	75.996	4.7929	73.057	72.594	77.387	-2.9389					288	99	5	0	0	0	0.16264	1	6057	6057		82.75	5.4329	1	9248900			51349	11596	42514	42545	55658	55658					0.1066454046281251
RSLALSLRL	9	Unmodified	_RSLALSLRL_					0	0	0		ENST00000524930.1_1_6:130504375-130535627:-|nuORF	ENST00000524930.1_1_6:130504375-130535627:-|nuORF	ENST00000524930.1_1_6:130504375-130535627:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.3114624023438	2	514.832383	1027.65021	-2.4061	-0.0012387	1.9772	0.0010179	-0.42889	-0.00022081	514.8333080540027	36.121	0.54425	33.411	33.201	33.745	-2.7097					15	10	2	0	0	0	0.027462	1	1493	1493		44.377	0	1	29084			51350	13174	42515	42546	55659	55659					0.13749417359508698
RSLASSHRNP	10	Unmodified	_RSLASSHRNP_					0	0	0		ENST00000354249.8_2_16:2030177-2031410:-|nuORF;ENST00000356120.8_2_16:2030177-2031410:-|nuORF	ENST00000354249.8_2_16:2030177-2031410:-|nuORF	ENST00000354249.8_2_16:2030177-2031410:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	563.353515625	2	562.799603	1123.58465	-1.1162	-0.00062817	4.0585	0.0022841	2.9423	0.001656	562.8016029620381	117.15	0.84216	116.12	115.8	116.64	-1.0324					29	16	2	0	0	0	0.026596	1	8788	8788		51.528	15.081	1	69011			51351	10659	42516	42547	55660	55660					0.02780396166531318
RSLASSHRNP	10	Unmodified	_RSLASSHRNP_					0	0	0		ENST00000354249.8_2_16:2030177-2031410:-|nuORF;ENST00000356120.8_2_16:2030177-2031410:-|nuORF	ENST00000354249.8_2_16:2030177-2031410:-|nuORF	ENST00000354249.8_2_16:2030177-2031410:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	562.799603	1123.58465	2.8315	0.0015936	-1.7706	-0.00099647	1.061	0.00059711	562.7984242100633	116.39	0.54669	116.39	116	116.55	0	0.20661	-0.0048983	NaN	51.528	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176720			51352	10659	42516	42547							0.02780396166531318
RSLDGKEPAR	10	Unmodified	_RSLDGKEPAR_					0	0	0		ENST00000414744.2_1_17:26926168-26926465:+|nuORF	ENST00000414744.2_1_17:26926168-26926465:+|nuORF	ENST00000414744.2_1_17:26926168-26926465:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.8334350585938	2	564.809636	1127.60472	2.0292	0.0011461	-2.2456	-0.0012683	-0.21634	-0.00012219	564.8082412467137	37.209	1.543	34.316	34.092	35.635	-2.8925					66	30	4	0	0	0	0.02649	1	1358	1358		74.165	5.3189	1	247630			51353	11582	42517	42548	55661	55661					0.04602147106470511
RSLDGRLQV	9	Unmodified	_RSLDGRLQV_					0	0	0		nc|ENSG00000120693|O15198-2|SMAD9;ENSG00000170365|ENST00000302085|SMAD1;ENSG00000120693|ENST00000379826|SMAD9;ENSG00000113658|ENST00000545279|SMAD5;ENST00000587353.5_1_18:45394679-45413284:-|nuORF;nc|ENSG00000166949|P84022-2|SMAD3;ENSG00000166949|ENST00000327367|SMAD3;nc|ENSG00000175387|Q15796-2|SMAD2;ENSG00000175387|ENST00000262160|SMAD2	nc|ENSG00000120693|O15198-2|SMAD9;nc|ENSG00000175387|Q15796-2|SMAD2	nc|ENSG00000120693|O15198-2|SMAD9	MULTI-MSMS	OvCa99_classI_Rep5	1	522.3048706054688	2	522.301447	1042.58834	-0.20835	-0.00010882	-0.006086	-3.1787E-06	-0.21444	-0.000112	522.3013199602158	58.047	0.7131	58.047	57.775	58.488	0					39	16	4	0	0	0	0.1944	1	4906	4906		77.318	3.0625	1	3280100			51354	3441;7540	42518	42549	55662	55662					0.06875065940380409
RSLDHCGDL	9	Unmodified	_RSLDHCGDL_					0	0	0		ENSG00000091106|ENST00000402280|NLRC4	ENSG00000091106|ENST00000402280|NLRC4	ENSG00000091106|ENST00000402280|NLRC4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.79388427734375	2	508.234916	1014.45528	-0.19266	-9.7915E-05	0.39717	0.00020185	0.20451	0.00010394	508.235896449587	128.41	0.30759	126.95	126.79	127.1	-1.4565					6	5	2	0	0	0	0.027462	1	12283	12283		35.618	0	1	4556.2			51355	1861	42519	42550	55663	55663					-0.0513712150777792
RSLDLSKNKI	10	Unmodified	_RSLDLSKNKI_					0	0	0		ENST00000540712.1_1_14:50068361-50081211:+|nuORF;ENSG00000165501|ENST00000298288|LRR1	ENST00000540712.1_1_14:50068361-50081211:+|nuORF	ENST00000540712.1_1_14:50068361-50081211:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	587.3515625	2	587.351137	1172.68772	-0.67861	-0.00039858	0.29232	0.00017169	-0.38629	-0.00022689	587.3512363961087	39.448	0.91315	39.448	39.287	40.2	0					39	20	4	0	0	0	0.11632	1	2317	2317		109.48	10.849	1	2355300			51356	6569	42520	42551	55664	55664					0.10828463834468494
RSLDRIRPI	9	Unmodified	_RSLDRIRPI_					0	0	0		chr16:4474166-4474330|212|10.06|0.06|7.45|-|1|NMRAL1,None|1;ENST00000575002.5_1_16:4517092-4524613:-|nuORF	chr16:4474166-4474330|212|10.06|0.06|7.45|-|1|NMRAL1,None|1	chr16:4474166-4474330|212|10.06|0.06|7.45|-|1|NMRAL1,None|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.8289184570312	2	563.346189	1124.67783	0.37887	0.00021344	3.4074	0.0019195	3.7862	0.002133	563.3479782709779	68.753	0.53803	68.753	68.481	69.019	0					22	12	2	0	0	0	0.027447	1	6481	6481		56.721	3.7844	1	753100			51357	380	42521	42552	55665	55665					0.12047320619740276
RSLEFPVK	8	Unmodified	_RSLEFPVK_					0	0	0			REV__tr|A0A7D6VRK2|A0A7D6VRK2_9CLOTPTSmannosetransportersubunitIIDOS=ClostridiumintestinaleOX=36845GN=manZPE=4SV=1	REV__tr|A0A7D6VRK2|A0A7D6VRK2_9CLOTPTSmannosetransportersubunitIIDOS=ClostridiumintestinaleOX=36845GN=manZPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.2884216308594	2	488.284734	974.554916	1.9506	0.00095245	-0.5875	-0.00028687	1.3631	0.00066558	488.28424627836347	83.951	0.6312	83.951	83.714	84.345	0					28	14	4	0	0	0	0.028476	1	8742	8742		79.713	0	1	772800	+		51358	31424	42522	42553	55666	55666					0.0666206416847217
RSLFDSFSL	9	Unmodified	_RSLFDSFSL_					0	0	0			REV__ENST00000375857.6_1_13:109445985-109707944:+|nuORF	REV__ENST00000375857.6_1_13:109445985-109707944:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.3067016601562	2	536.277106	1070.53966	0.26657	0.00014296	-0.27618	-0.00014811	-0.0096016	-5.1491E-06	536.2766971129041	101.88	0.83768	100.36	100	100.84	-1.5211					28	15	3	0	0	0	0.027418	1	6956	6956		49.442	0	1	87637	+		51359	16632	42523	42554	55667	55667					0.007211525806042118
RSLFIGHIP	9	Unmodified	_RSLFIGHIP_					0	0	0		nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.8232421875	2	520.306001	1038.59745	-0.89735	-0.00046689	-0.64162	-0.00033384	-1.539	-0.00080073	520.3054479384747	136.38	0.6893	135.27	135	135.69	-1.1076					21	13	2	0	0	0	0.027449	1	11040	11040		50.025	0	1	32415			51360	8733	42524	42555	55668	55668					0.07969459296691639
RSLFLIHGH	9	Unmodified	_RSLFLIHGH_					0	0	0		chr11:13967161-13982847|147|36.29|0.1|8.43|+|2|TE_info:MIRb,MIRb_dup141092,MIR,SINE,donor,-,13966994,13967161|None,SPON1|2	chr11:13967161-13982847|147|36.29|0.1|8.43|+|2|TE_info:MIRb,MIRb_dup141092,MIR,SINE,donor,-,13966994,13967161|None,SPON1|2	chr11:13967161-13982847|147|36.29|0.1|8.43|+|2|TE_info:MIRb,MIRb_dup141092,MIR,SINE,donor,-,13966994,13967161|None,SPON1|2	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3062744140625	2	540.309075	1078.6036	-1.6386	-0.00088533	-2.7024	-0.0014601	-4.341	-0.0023455	540.3075767291322	41.856	1.2841	38.875	38.491	39.775	-2.9804					55	24	3	0	0	0	0.51865	1	1893	1893		40.778	7.2626	1	243110			51361	285	42525	42556	55669	55669					0.06743977528253708
RSLFQEEPSL	10	Unmodified	_RSLFQEEPSL_					0	0	0			REV__ENST00000514984.1_1_4:1244113-1244919:+|nuORF	REV__ENST00000514984.1_1_4:1244113-1244919:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	603.2872314453125	2	603.311677	1204.6088	0.68301	0.00041207	1.6693	0.0010071	2.3523	0.0014192	603.3124495552663	92.131	2.5926	90.107	89.483	92.076	-2.0241					116	52	3	0	0	0	0.026826	1	5879	5879		36.447	3.6343	1	1073000	+		51362	26993	42526	42557	55670	55670					0.01468191809522068
RSLFRRVVL	9	Unmodified	_RSLFRRVVL_					0	0	0			REV__chr6:109250991-109254448|247|18.56|0.13|7.16|+|1|TE_info:L1PA2,L1PA2_dup2028,L1,LINE,donor,-,109245219,109250991|None,CCDC162P|102	REV__chr6:109250991-109254448|247|18.56|0.13|7.16|+|1|TE_info:L1PA2,L1PA2_dup2028,L1,LINE,donor,-,109245219,109250991|None,CCDC162P|102	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.3394775390625	2	573.366924	1144.7193	-0.44314	-0.00025408	2.6513	0.0015202	2.2082	0.0012661	573.3682789578563	71.409	0.19746	71.409	71.23	71.427	0					6	4	2	0	0	0	0.027462	1	6877	6877		10.866	0	1	225740	+		51363	16067	42527	42558	55671	55671					0.15272501379081405
RSLFRRVVL	9	Unmodified	_RSLFRRVVL_					0	0	0			REV__chr6:109250991-109254448|247|18.56|0.13|7.16|+|1|TE_info:L1PA2,L1PA2_dup2028,L1,LINE,donor,-,109245219,109250991|None,CCDC162P|102	REV__chr6:109250991-109254448|247|18.56|0.13|7.16|+|1|TE_info:L1PA2,L1PA2_dup2028,L1,LINE,donor,-,109245219,109250991|None,CCDC162P|102	MULTI-MATCH	OvCa9_classI_Rep2	2		2	573.366924	1144.7193	-1.1848	-0.00067934	0.81815	0.0004691	-0.36667	-0.00021023	573.3673475596833	73.447	0.73586	71.047	70.792	71.528	-2.3999	-0.18057	-0.00013742	NaN	14.865	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11219	+		51364	16067	42527	42558							0.15272501379081405
RSLGKKTIN	9	Unmodified	_RSLGKKTIN_					0	0	0			REV__nc|ENSG00000144406|Q8N2C7-7|UNC80	REV__nc|ENSG00000144406|Q8N2C7-7|UNC80	MULTI-MSMS	OvCa9_classI_Rep3	3	508.8136291503906	2	508.81419	1015.61383	-0.78833	-0.00040111	2.7045	0.0013761	1.9162	0.00097497	508.81565400574175	75.018	5.5984	72.607	72.192	77.79	-2.4106					316	110	5	0	0	0	0.27001	1	3744	3744		66.429	6.311	1	9586100	+		51365	19910	42528	42559	55672	55672					0.10664540462801142
RSLGKKTIN	9	Unmodified	_RSLGKKTIN_					0	0	0			REV__nc|ENSG00000144406|Q8N2C7-7|UNC80	REV__nc|ENSG00000144406|Q8N2C7-7|UNC80	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.8155212402344	2	508.81419	1015.61383	-0.3083	-0.00015687	2.4682	0.0012559	2.1599	0.001099	508.81539821309786	75.996	4.7929	73.057	72.594	77.387	-2.9389					288	99	5	0	0	0	0.26076	1	6110	6110		67.494	5.8024	1	9248900	+		51366	19910	42528	42559	55673	55673					0.10664540462801142
RSLGSSPVK	9	Unmodified	_RSLGSSPVK_					0	0	0		ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.77227783203125	2	465.771991	929.529429	0.52286	0.00024353	-0.56953	-0.00026527	-0.046666	-2.1736E-05	465.7715531655395	37.895	1.4402	35.003	34.541	35.982	-2.8925					63	28	4	0	0	0	0.3249	1	1436	1436		60.118	1.3363	1	305700			51367	7484	42529	42560	55674	55674					0.06184589646045424
RSLGSSPVK	9	Unmodified	_RSLGSSPVK_					0	0	0		ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	465.771991	929.529429	-1.7937	-0.00083544	2.0494	0.00095456	0.25575	0.00011912	465.772650443139	37.968	1.5813	35.259	35.026	36.607	-2.7097	0.12801	0.0015018	NaN	60.118	42	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85602			51368	7484	42529	42560							0.06184589646045424
RSLGTELFKI	10	Unmodified	_RSLGTELFKI_					0	0	0		ENSG00000125414|ENST00000245503|MYH2	ENSG00000125414|ENST00000245503|MYH2	ENSG00000125414|ENST00000245503|MYH2	MULTI-MSMS	OvCa99_classI_Rep5	1	582.3469848632812	2	582.342781	1162.67101	2.2284	0.0012977	3.0533	0.001778	5.2817	0.0030758	582.3445401660628	100.7	1.8899	100.7	100.4	102.29	0					155	44	5	0	0	0	0.19075	1	11154	11154		95.815	0	1	32953000			51369	3707	42530	42561	55675	55675					0.0961796294850501
RSLHHHLY	8	Unmodified	_RSLHHHLY_					0	0	0			REV__tr|A0A553ST45|A0A553ST45_NIACIHelicaseOS=NialliacirculansOX=1397GN=CEQ21_04180PE=4SV=1	REV__tr|A0A553ST45|A0A553ST45_NIACIHelicaseOS=NialliacirculansOX=1397GN=CEQ21_04180PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.7835083007812	2	531.783225	1061.5519	-2.1067	-0.0011203	0.42671	0.00022692	-1.68	-0.00089338	531.7833355543751	73.135	0.77467	69.739	69.397	70.172	-3.3961					35	15	3	0	0	0	0.64026	1	5650	5650		55.504	2.1528	1	680860	+		51370	30916	42531	42562	55676	55676					0.02358233834343082
RSLHLHSPV	9	Unmodified	_RSLHLHSPV_					0	0	0		ENST00000486332.1_1_6:32816736-32816886:-|nuORF	ENST00000486332.1_1_6:32816736-32816886:-|nuORF	ENST00000486332.1_1_6:32816736-32816886:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8096313476562	2	523.298707	1044.58286	0.28497	0.00014912	-4.4877	-0.0023484	-4.2027	-0.0021993	523.2963629645152	114.3	0.41129	114.3	113.97	114.38	0					13	8	2	0	0	0	0.027462	1	13024	13024		20.947	9.4359	1	45180			51371	12622	42532	42563	55677	55677					0.06235387148558402
RSLILNNII	9	Unmodified	_RSLILNNII_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.3042602539062	2	528.332216	1054.64988	-1.8872	-0.00099705	-3.4635	-0.0018299	-5.3507	-0.0028269	528.3270408139658	95.49	1.7178	93.021	92.561	94.279	-2.4685					91	33	5	0	0	0	0.027441	1	8458	8458		49.442	7.0454	1	324830			51372	8158	42533	42564	55678	55678					0.12473997639654044
RSLIVSDI	8	Unmodified	_RSLIVSDI_					0	0	0			REV__ENST00000250457.7_1_14:34394781-34394922:-|nuORF	REV__ENST00000250457.7_1_14:34394781-34394922:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	451.25537109375	2	451.768917	901.523281	-0.43388	-0.00019602	0.028746	1.2986E-05	-0.40514	-0.00018303	451.76890700558823	64.319	0.37114	64.319	64.132	64.503	0					12	8	2	0	0	0	0.028476	1	5815	5815		34.173	0	1	91534	+		51373	23859	42534	42565	55679	55679					0.06858071414524147
RSLKDRGF	8	Unmodified	_RSLKDRGF_					0	0	0		ENST00000477229.1_1_1:20987242-20987843:-|nuORF;nc|ENSG00000244038|P39656-3|DDOST;ENSG00000244038|ENST00000602624|DDOST;nc|ENSG00000244038|P39656|DDOST	ENST00000477229.1_1_1:20987242-20987843:-|nuORF	ENST00000477229.1_1_1:20987242-20987843:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.75238037109375	2	489.777608	977.540663	-0.13474	-6.5991E-05	0.080946	3.9646E-05	-0.053791	-2.6346E-05	489.7775396151141	52.896	1.0461	52.896	52.259	53.305	0					40	23	4	0	0	0	0.028476	1	4152	4152		24.203	2.2429	1	1144800			51374	9390	42535	42566	55680	55680					0.05099411740184223
RSLKGRVL	8	Unmodified	_RSLKGRVL_					0	0	0			REV__CACNA1D-DNAH1|1|fusion;REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__CACNA1D-DNAH1|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.2117614746094	2	464.806168	927.597784	-0.85655	-0.00039813	0.9861	0.00045835	0.12955	6.0214E-05	464.8064995858436	34.878	0.27929	34.878	34.725	35.004	0					9	5	2	0	0	0	0.028476	1	1730	1730		26.796	0	1	34291	+		51375	15726;18203	42536	42567	55681	55681					0.1310887901655633
RSLKLLKSH	9	Unmodified	_RSLKLLKSH_					0	0	0		ENSG00000141452|ENST00000269221|RMC1;ENST00000589215.5_1_18:21087981-21111645:+|nuORF	ENSG00000141452|ENST00000269221|RMC1	ENSG00000141452|ENST00000269221|RMC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.3463745117188	2	541.345658	1080.67676	-1.5145	-0.00081988	1.2112	0.00065567	-0.30334	-0.00016421	541.3461893077629	92.512	1.558	89.97	89.466	91.024	-2.5425					85	30	4	0	0	0	0.40818	1	8055	8055		51.193	13.381	1	450690			51376	4916	42537	42568	55682	55682					0.13965106250861936
RSLKLNKKV	9	Unmodified	_RSLKLNKKV_					0	0	0			REV__ENST00000464744.5_2_13:37619503-37622072:-|nuORF	REV__ENST00000464744.5_2_13:37619503-37622072:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	543.3616333007812	2	543.361308	1084.70806	0.11085	6.0229E-05	0.074075	4.025E-05	0.18492	0.00010048	543.3611187238471	20.95	0.23787	20.95	20.823	21.061	0					11	4	3	0	0	0	0.49652	1	75	75		42.864	3.6114	1	64976	+		51377	26157	42538	42569	55683	55683					0.1690967928493592
RSLKLNKKV	9	Unmodified	_RSLKLNKKV_					0	0	0			REV__ENST00000464744.5_2_13:37619503-37622072:-|nuORF	REV__ENST00000464744.5_2_13:37619503-37622072:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	543.361308	1084.70806	0.11085	6.0229E-05	0.074075	4.025E-05	0.18492	0.00010048	543.3611187238471	20.95	0.23787	20.95	20.823	21.061	0	0	0	NaN	42.864	11	4	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64976	+		51378	26157	42538	42569							0.1690967928493592
RSLKRAEW	8	Unmodified	_RSLKRAEW_					0	0	0			REV__ENSG00000166225|ENST00000549921|FRS2	REV__ENSG00000166225|ENST00000549921|FRS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.314453125	2	523.298707	1044.58286	-0.68688	-0.00035944	-0.8198	-0.000429	-1.5067	-0.00078844	523.2979888694764	47.528	0.30188	47.528	47.379	47.681	0					9	6	2	0	0	0	0.028476	1	3431	3431		17.365	0	1	690340	+		51379	21169	42539	42570	55684	55684					0.06235387148535665
RSLKRALIL	9	Unmodified	_RSLKRALIL_					0	0	0		sp|F5HF62|US28_HCMVMEnvelopeproteinUS28OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US28PE=3SV=1	sp|F5HF62|US28_HCMVMEnvelopeproteinUS28OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US28PE=3SV=1	sp|F5HF62|US28_HCMVMEnvelopeproteinUS28OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US28PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.3483276367188	2	535.36385	1068.71315	0.79774	0.00042708	-1.3192	-0.00070627	-0.52149	-0.00027919	535.3644492731531	132.27	0.42128	132.27	132.04	132.46	0					11	8	2	0	0	0	0.027462	1	15375	15375		21.96	6.3181	1	38849			51380	32871	42540	42571	55685	55685					0.18153983147567487
RSLKRKLN	8	Unmodified	_RSLKRKLN_					0	0	0			REV__ENST00000447630.5_2_3:42636237-42636381:+|nuORF	REV__ENST00000447630.5_2_3:42636237-42636381:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3153076171875	2	507.830175	1013.6458	-0.4331	-0.00021994	0.56219	0.0002855	0.12909	6.5555E-05	507.83018603316845	105.67	0.6041	103.66	103.45	104.05	-2.0161					20	11	2	0	0	0	0.028476	1	9598	9598		32.812	0	1	19791	+		51381	25918	42541	42572	55686	55686					0.13951952936611178
RSLKVPQLL	9	Unmodified	_RSLKVPQLL_					0	0	0			REV__nc|ENSG00000165271|Q9H6R4-3|NOL6	REV__nc|ENSG00000165271|Q9H6R4-3|NOL6	MULTI-MSMS	OvCa9_classI_Rep2	2	527.3428344726562	2	527.342584	1052.67061	2.2817	0.0012032	-2.4212	-0.0012768	-0.13953	-7.3579E-05	527.3412130770646	27.081	0.8382	24.371	24.073	24.911	-2.7097					49	23	3	0	0	0	0.69895	1	471	471		18.324	0.95945	1	32709	+		51382	21075	42542	42573	55687	55687					0.1463858801932929
RSLLALPLL	9	Unmodified	_RSLLALPLL_					0	0	0		ENST00000274140.9_1_5:10435413-10435635:+|nuORF	ENST00000274140.9_1_5:10435413-10435635:+|nuORF	ENST00000274140.9_1_5:10435413-10435635:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3349609375	2	498.334227	994.653902	-1.8174	-0.00090567	1.0953	0.00054583	-0.72208	-0.00035984	498.334772441205	125.12	4.2738	123.72	123.39	127.66	-1.3908					210	84	5	0	0	0	0.46377	1	12056	12056		45.952	3.5558	1	4129000			51383	10015	42543	42574	55688	55688					0.15636087133384535
RSLLAPLLL	9	Unmodified	_RSLLAPLLL_					0	0	0		ENSG00000111012|ENST00000228606|CYP27B1;ENST00000547344.5_1_12:58159017-58160836:-|nuORF	ENSG00000111012|ENST00000228606|CYP27B1	ENSG00000111012|ENST00000228606|CYP27B1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.33416748046875	2	498.334227	994.653902	0.034655	1.727E-05	-0.51496	-0.00025662	-0.48031	-0.00023935	498.3339335091273	123.54	3.2541	123.31	122.99	126.25	-0.23193					175	65	5	0	0	0	0.22961	3	11965	11965;12022;12088		71.296	4.8664	1	3004600			51384	2806	42544	42575	55689;55690;55691	55689					0.15636087133384535
RSLLAPLLL	9	Unmodified	_RSLLAPLLL_					0	0	0		ENSG00000111012|ENST00000228606|CYP27B1;ENST00000547344.5_1_12:58159017-58160836:-|nuORF	ENSG00000111012|ENST00000228606|CYP27B1	ENSG00000111012|ENST00000228606|CYP27B1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3337707519531	2	498.334227	994.653902	0.2425	0.00012085	-0.5271	-0.00026267	-0.2846	-0.00014182	498.33387359588454	132.52	1.8753	132.29	131.93	133.81	-0.22696					110	37	5	0	0	0	0.40667	1	13078	13078		51.335	0	1	948910			51385	2806	42544	42575	55692	55692					0.15636087133384535
RSLLAPLLL	9	Unmodified	_RSLLAPLLL_					0	0	0		ENSG00000111012|ENST00000228606|CYP27B1;ENST00000547344.5_1_12:58159017-58160836:-|nuORF	ENSG00000111012|ENST00000228606|CYP27B1	ENSG00000111012|ENST00000228606|CYP27B1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3333740234375	2	498.334227	994.653902	-0.31291	-0.00015594	0.085793	4.2754E-05	-0.22712	-0.00011318	498.334174042398	135.29	1.7167	135.06	134.69	136.4	-0.22696					83	34	4	0	0	0	0.31747	4	13445	13397;13427;13433;13445		60.972	5.3856	1	281670			51386	2806	42544	42575	55693;55694;55695;55696	55696					0.15636087133384535
RSLLAPLLL	9	Unmodified	_RSLLAPLLL_					0	0	0		ENSG00000111012|ENST00000228606|CYP27B1;ENST00000547344.5_1_12:58159017-58160836:-|nuORF	ENSG00000111012|ENST00000228606|CYP27B1	ENSG00000111012|ENST00000228606|CYP27B1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.33392333984375	2	498.334227	994.653902	-1.4326	-0.00071391	1.262	0.00062888	-0.17064	-8.5035E-05	498.3347342059933	136.81	1.8563	135.72	135.27	137.12	-1.0858					84	37	3	0	0	0	0.36502	1	11104	11104		55.504	2.1528	1	104120			51387	2806	42544	42575	55697	55697					0.15636087133384535
RSLLAPLLL	9	Unmodified	_RSLLAPLLL_					0	0	0		ENSG00000111012|ENST00000228606|CYP27B1;ENST00000547344.5_1_12:58159017-58160836:-|nuORF	ENSG00000111012|ENST00000228606|CYP27B1	ENSG00000111012|ENST00000228606|CYP27B1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3348388671875	2	498.334227	994.653902	-1.8174	-0.00090567	1.0953	0.00054583	-0.72208	-0.00035984	498.334772441205	125.12	4.2738	123.72	123.39	127.66	-1.3908					210	84	5	0	0	0	0.44568	1	12074	12074		47.657	0	1	4129000			51388	2806	42544	42575	55698	55698					0.15636087133384535
RSLLAPLLL	9	Unmodified	_RSLLAPLLL_					0	0	0		ENSG00000111012|ENST00000228606|CYP27B1;ENST00000547344.5_1_12:58159017-58160836:-|nuORF	ENSG00000111012|ENST00000228606|CYP27B1	ENSG00000111012|ENST00000228606|CYP27B1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.333740234375	2	498.334227	994.653902	1.9139	0.00095378	-2.3002	-0.0011463	-0.38626	-0.00019248	498.33299664402506	137.15	1.8718	135.61	134.84	136.71	-1.5437					88	39	4	0	0	0	0.16524	2	13317	13305;13317		82.305	5.5309	1	198330			51389	2806	42544	42575	55699;55700	55700					0.15636087133384535
RSLLAWLL	8	Unmodified	_RSLLAWLL_					0	0	0			REV__ENST00000294008.3_1_16:3632019-3632346:-|nuORF	REV__ENST00000294008.3_1_16:3632019-3632346:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	486.3048400878906	2	486.30547	970.596387	-1.0237	-0.00049782	0.68907	0.0003351	-0.3346	-0.00016272	486.3057082440577	120.4	1.6293	120.23	119.94	121.57	-0.17138					88	32	4	0	0	0	0.745	1	11632	11632		29.15	0	1	594410	+		51390	24177	42545	42576	55701	55701					0.10991244927799926
RSLLEPLGL	9	Unmodified	_RSLLEPLGL_					0	0	0		ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.30517578125	2	499.305667	996.596781	-1.3601	-0.0006791	0.94489	0.00047179	-0.41519	-0.00020731	499.3060449045134	43.546	1.2746	40.538	40.22	41.495	-3.0074					50	24	3	0	0	0	0.42676	1	2092	2092		49.442	3.4896	1	221690			51391	4984	42546	42577	55702	55702					0.09834619856997051
RSLLEPLGL	9	Unmodified	_RSLLEPLGL_					0	0	0		ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	ENSG00000142619|ENST00000375460|PADI3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	499.305667	996.596781	0.31836	0.00015896	-0.57723	-0.00028821	-0.25887	-0.00012925	499.30528650690786	43.288	0.89167	40.579	40.312	41.203	-2.7097	0.02016	-0.0012248	NaN	49.442	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55055			51392	4984	42546	42577							0.09834619856997051
RSLLKPLELE	10	Unmodified	_RSLLKPLELE_					0	0	0		ENSG00000151233|ENST00000398675|GXYLT1;nc|ENSG00000151233|Q4G148-2|GXYLT1	ENSG00000151233|ENST00000398675|GXYLT1	ENSG00000151233|ENST00000398675|GXYLT1	MULTI-MSMS	OvCa99_classI_Rep5	1	599.3632202148438	2	599.363713	1196.71287	-0.14171	-8.4935E-05	-2.2637	-0.0013568	-2.4055	-0.0014417	599.3621937433513	47.728	0.7835	47.728	47.465	48.248	0					42	17	4	0	0	0	0.62299	1	3451	3451		39.253	2.0937	1	1478700			51393	5543	42547	42578	55703	55703					0.12238518637059315
RSLLLAGAAE	10	Unmodified	_RSLLLAGAAE_					0	0	0		nc|ENSG00000074054|Q7Z460-2|CLASP1;nc|ENSG00000074054|Q7Z460-4|CLASP1;nc|ENSG00000074054|Q7Z460-5|CLASP1;nc|ENSG00000074054|Q7Z460-3|CLASP1;nc|ENSG00000074054|Q7Z460|CLASP1;ENSG00000074054|ENST00000696935|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.2804870605469	2	500.792924	999.571294	-0.53433	-0.00026759	2.3868	0.0011953	1.8524	0.00092768	500.7942079095297	90.743	0.82266	88.168	87.956	88.779	-2.575					25	15	2	0	0	0	0.026931	1	7818	7818		23.523	0.94304	1	39916			51394	1506	42548	42579	55704	55704					0.07149145334551577
RSLLMLEL	8	Unmodified	_RSLLMLEL_					0	0	0			REV__nc|ENSG00000171877|Q7Z6J6-2|FRMD5	REV__nc|ENSG00000171877|Q7Z6J6-2|FRMD5	MULTI-MSMS	OvCa9_classI_Rep3	3	487.7868347167969	2	487.788795	973.563038	-0.68011	-0.00033175	-3.9726	-0.0019378	-4.6527	-0.0022695	487.78717268319804	102.91	1.8832	101.39	100.69	102.57	-1.5211					99	35	5	0	0	0	0.68714	1	7123	7123		45.952	1.4209	1	721970	+		51395	21655	42549	42580	55705	55705					0.0751987509358969
RSLLREEDL	9	Unmodified	_RSLLREEDL_					0	0	0		HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|32|2|sense	HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|32|2|sense	HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|32|2|sense	MSMS	OvCa99_classI_Rep5	1	565.8136596679688	2	565.811845	1129.60914	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.002	1	49.002	48.502	49.502	0								0	0	0	0.1712	1	3632	3632		47.96	3.5823	1				51396	14436	42550	42581	55706	55706					0.049516115293727125
RSLNRDLDV	9	Unmodified	_RSLNRDLDV_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.3207397460938	2	544.296362	1086.57817	1.9783	0.0010768	-4.4852	-0.0024413	-2.5069	-0.0013645	544.2931872748861	95.649	0.37491	95.649	95.41	95.785	0					11	8	2	0	0	0	0.027462	1	10440	10440		30.318	0	1	313820	+		51397	17764	42551	42582	55707	55707					0.03834458215123959
RSLNRKPRSL	10	Unmodified	_RSLNRKPRSL_					0	0	0			REV__nc|ENSG00000101222|Q9Y4P9-2|SPEF1	REV__nc|ENSG00000101222|Q9Y4P9-2|SPEF1	MULTI-SECPEP	OvCa9_classI_Rep2	2	409.60711669921875	3	409.586189	1225.73674	0.48168	0.00019729	-1.4423	-0.00059074	-0.9606	-0.00039345	409.58536274819477	104.52	0.44658	103.94	103.82	104.27	-0.57639					13	8	2	0	0	0	0.026949	1	9713	9713		28.577	0	1	10937	+		51398	17483	42552	42583	55708	55708					0.13289796914068575
RSLQAQKGPL	10	Unmodified	_RSLQAQKGPL_					0	0	0			REV__ENST00000555759.1_1_14:95904955-95916441:-|nuORF	REV__ENST00000555759.1_1_14:95904955-95916441:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	549.3240966796875	2	549.324922	1096.63529	-1.9795	-0.0010874	1.6856	0.00092594	-0.29395	-0.00016148	549.3257656556187	35.686	1.1428	32.977	32.75	33.893	-2.7097					64	22	4	0	0	0	0.64697	1	1473	1473		36.447	0.82846	1	371650	+		51399	21951	42553	42584	55709	55709					0.0908392549151813
RSLQPSQW	8	Unmodified	_RSLQPSQW_					0	0	0		ENSG00000013503|ENST00000228347|POLR3B;nc|ENSG00000013503|Q9NW08-2|POLR3B;POLR3B|p.L708Tfs*13|1|0.06|ENSG00000013503|chr12:106454510-106454511|-/GATACAACCAGCGAAACAGAATT|frameshift_variant	ENSG00000013503|ENST00000228347|POLR3B	ENSG00000013503|ENST00000228347|POLR3B	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.812255859375	2	501.261791	1000.50903	-0.51239	-0.00025684	0.93686	0.00046961	0.42447	0.00021277	501.2618979881641	68.422	0.58165	68.422	68.152	68.733	0					18	13	3	0	0	0	0.028476	1	6502	6502		15.642	0	1	536180			51400	987	42554	42585	55710	55710					0.008794189862328494
RSLRKNKDLL	10	Unmodified	_RSLRKNKDLL_					0	0	0			REV__nc|ENSG00000188385|Q5VZ66|JAKMIP3	REV__nc|ENSG00000188385|Q5VZ66|JAKMIP3	MULTI-MSMS	OvCa99_classI_Rep5	1	621.8882446289062	2	621.885678	1241.7568	1.9249	0.0011971	2.6125	0.0016247	4.5374	0.0028217	621.887169312762	121.97	0.55918	121.97	121.71	122.27	0					31	11	4	0	0	0	0.50873	1	14048	14048		53.089	4.4874	1	676350	+		51401	22712	42555	42586	55711	55711					0.14559547854037191
RSLRKNKDLL	10	Unmodified	_RSLRKNKDLL_					0	0	0			REV__nc|ENSG00000188385|Q5VZ66|JAKMIP3	REV__nc|ENSG00000188385|Q5VZ66|JAKMIP3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	621.885678	1241.7568	-0.96334	-0.00059909	3.4749	0.002161	2.5115	0.0015619	621.887561296573	122.41	0.69127	122.19	121.92	122.61	-0.21803	0.021378	0.0019362	NaN	53.089	19	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34625	+		51402	22712	42555	42586							0.14559547854037191
RSLRKNKDLL	10	Unmodified	_RSLRKNKDLL_					0	0	0			REV__nc|ENSG00000188385|Q5VZ66|JAKMIP3	REV__nc|ENSG00000188385|Q5VZ66|JAKMIP3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	621.885678	1241.7568	2.3035	0.0014325	-0.46437	-0.00028878	1.8392	0.0011438	621.8854243413329	123.3	0.8812	122.26	121.89	122.77	-1.0377	0.09293	-0.0029633	NaN	53.089	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42923	+		51403	22712	42555	42586							0.14559547854037191
RSLRKNKDLL	10	Unmodified	_RSLRKNKDLL_					0	0	0			REV__nc|ENSG00000188385|Q5VZ66|JAKMIP3	REV__nc|ENSG00000188385|Q5VZ66|JAKMIP3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	621.885678	1241.7568	-0.26683	-0.00016594	2.0086	0.0012491	1.7418	0.0010832	621.8869661821345	123.63	0.69037	122.26	122	122.69	-1.3666	0.089902	0.00011256	NaN	53.089	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50593	+		51404	22712	42555	42586							0.14559547854037191
RSLRLALP	8	Unmodified	_RSLRLALP_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	MULTI-SECPEP	OvCa99_classI_Rep5	1	463.2539367675781	2	463.300719	924.586885	-0.16283	-7.5438E-05	0.2651	0.00012282	0.10228	4.7384E-05	463.30060202492507	56.464	0.48804	56.464	56.135	56.623	0					18	11	2	0	0	0	0.028476	1	4669	4669		15.642	0	1	211860	+		51405	29026	42556	42587	55712	55712					0.12157476642266829
RSLRPHLLS	9	Unmodified	_RSLRPHLLS_					0	0	0			REV__nc|ENSG00000158055|Q8TE85|GRHL3	REV__nc|ENSG00000158055|Q8TE85|GRHL3	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.80615234375	2	539.827632	1077.64071	-0.3535	-0.00019083	2.5331	0.0013675	2.1796	0.0011766	539.8287172954404	84.94	1.2882	82.72	82.398	83.686	-2.2204					58	25	3	0	0	0	0.027462	1	4982	4982		19.997	5.1319	1	131210	+		51406	28949	42557	42588	55713	55713					0.10499649073994988
RSLRRKYAP	9	Unmodified	_RSLRRKYAP_					0	0	0		nc|ENSG00000188004|P0DPA3|SNHG28;ENSG00000243284|ENST00000368100|VSIG8	nc|ENSG00000188004|P0DPA3|SNHG28	nc|ENSG00000188004|P0DPA3|SNHG28	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.30322265625	2	573.846356	1145.67816	-0.9126	-0.00052369	0.21986	0.00012617	-0.69273	-0.00039752	573.8464220373686	50.432	0.48388	50.432	50.201	50.685	0					17	10	2	0	0	0	0.027462	1	3804	3804		26.693	11.828	1	236430			51407	9374	42558	42589	55714	55714					0.11114740339598939
RSLSCRTQ	8	Unmodified	_RSLSCRTQ_					0	0	0		ENST00000394685.7_1_15:81071845-81165978:+|nuORF	ENST00000394685.7_1_15:81071845-81165978:+|nuORF	ENST00000394685.7_1_15:81071845-81165978:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.9246826171875	2	475.74545	949.476348	-0.082022	-3.9022E-05	-3.5222	-0.0016757	-3.6042	-0.0017147	475.7436720790165	47.313	0.56232	47.313	47.076	47.638	0					27	12	3	0	0	0	0.028476	1	3373	3373		40.573	6.4001	1	725590			51408	11274	42559	42590	55715	55715					-0.00041111408268079686
RSLSFVPLL	9	Unmodified	_RSLSFVPLL_					0	0	0		chr11:2149345-2149472|171|44.95|0.0|13.61|-|1|INS-IGF2,IGF2|1	chr11:2149345-2149472|171|44.95|0.0|13.61|-|1|INS-IGF2,IGF2|1	chr11:2149345-2149472|171|44.95|0.0|13.61|-|1|INS-IGF2,IGF2|1	MULTI-MSMS	OvCa9_classI_Rep3	3	516.3133544921875	2	516.316035	1030.61752	-5.397	-0.0027865	1.4148	0.00073048	-3.9822	-0.0020561	516.3166994253895	156.49	2.0589	155.32	154.75	156.81	-1.1707					101	49	4	0	0	0	0.59259	1	13457	13457		32.812	2.9709	1	710990			51409	289	42560	42591	55716	55716					0.10343210236646883
RSLSKVKDVI	10	Unmodified	_RSLSKVKDVI_					0	0	0			REV__sp|P16736|HELI_HCMVADNAreplicationhelicaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=HELIPE=3SV=1	REV__sp|P16736|HELI_HCMVADNAreplicationhelicaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=HELIPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	572.8564453125	2	572.856055	1143.69756	-0.074684	-4.2783E-05	0.70176	0.00040201	0.62708	0.00035923	572.8563926499218	31.832	0.49637	31.832	31.608	32.105	0					20	9	3	0	0	0	0.73063	1	1346	1346		27.047	2.5281	1	267150	+		51410	29408	42561	42592	55717	55717					0.13145651839840866
RSLSRLRE	8	Unmodified	_RSLSRLRE_					0	0	0		ENSG00000104059|ENST00000261275|ENTREP2	ENSG00000104059|ENST00000261275|ENTREP2	ENSG00000104059|ENST00000261275|ENTREP2	MULTI-MSMS	OvCa9_classI_Rep3	3	508.8037109375	2	508.801614	1015.58868	-0.66266	-0.00033716	4.3472	0.0022119	3.6845	0.0018747	508.8039978631368	74.675	1.1236	72.264	71.747	72.87	-2.4106					60	22	5	0	0	0	0.58347	1	3737	3737		67.494	5.3863	1	1714500			51411	2350	42562	42593	55718	55718					0.08150485660235063
RSLSSSITF	9	Unmodified	_RSLSSSITF_					0	0	0		ENST00000586818.1_1_19:28294655-28294964:+|nuORF	ENST00000586818.1_1_19:28294655-28294964:+|nuORF	ENST00000586818.1_1_19:28294655-28294964:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	499.2706298828125	2	499.269281	996.52401	1.4485	0.00072321	2.4019	0.0011992	3.8504	0.0019224	499.2703458737483	88.651	1.6275	87.284	86.69	88.318	-1.3676					91	32	4	0	0	0	0.13482	3	7774	7762;7768;7774		87.754	8.3033	1	1151300			51412	14051	42563	42594	55719;55720;55721	55721					0.02560866063561207
RSLSSSITF	9	Unmodified	_RSLSSSITF_					0	0	0		ENST00000586818.1_1_19:28294655-28294964:+|nuORF	ENST00000586818.1_1_19:28294655-28294964:+|nuORF	ENST00000586818.1_1_19:28294655-28294964:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	499.27239990234375	2	499.269281	996.52401	-0.72327	-0.00036111	4.4301	0.0022118	3.7069	0.0018507	499.271356214281	89.338	1.5163	87.207	86.846	88.362	-2.1309					90	29	4	0	0	0	0.22621	1	5509	5509		71.877	5.4482	1	2067700			51413	14051	42563	42594	55722	55722					0.02560866063561207
RSLSSSITF	9	Unmodified	_RSLSSSITF_					0	0	0		ENST00000586818.1_1_19:28294655-28294964:+|nuORF	ENST00000586818.1_1_19:28294655-28294964:+|nuORF	ENST00000586818.1_1_19:28294655-28294964:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.2722473144531	2	499.269281	996.52401	0.3449	0.0001722	3.3046	0.0016499	3.6495	0.0018221	499.2708039159593	89.798	1.4152	87.223	86.95	88.365	-2.575					83	27	4	0	0	0	0.14998	1	7734	7734		84.916	10.66	1	2048000			51414	14051	42563	42594	55723	55723					0.02560866063561207
RSLVLELSHLL	11	Unmodified	_RSLVLELSHLL_					0	0	0			REV__ENSG00000197272|ENST00000356897|IL27	REV__ENSG00000197272|ENST00000356897|IL27	MULTI-SECPEP	OvCa9_classI_Rep4_	4	427.25103759765625	3	427.2626	1278.76597	-0.014698	-6.2798E-06	3.8693	0.0016532	3.8546	0.0016469	427.2640354587208	91.341	1.6797	88.798	88.244	89.924	-2.5425					68	32	3	0	0	0	0.026145	1	7885	7885		12.957	0	1	52001	+		51415	22906	42564	42595	55724	55724					0.13773896419706944
RSLVLTYV	8	Unmodified	_RSLVLTYV_					0	0	0		nc|ENSG00000123146|P48960-2|ADGRE5;nc|ENSG00000123146|P48960-3|ADGRE5;ENSG00000123146|ENST00000242786|ADGRE5	nc|ENSG00000123146|P48960-2|ADGRE5	nc|ENSG00000123146|P48960-2|ADGRE5	MULTI-MSMS	OvCa9_classI_Rep2	2	475.78753662109375	2	475.78711	949.559667	-0.029569	-1.4069E-05	-0.66818	-0.00031791	-0.69775	-0.00033198	475.78674140613987	31.394	0.83896	28.684	28.543	29.382	-2.7097					48	16	5	0	0	0	0.75426	1	979	979		18.324	0.95945	1	116230			51416	3578	42565	42596	55725	55725					0.08286948311229025
RSLVYKRRVG	10	Unmodified	_RSLVYKRRVG_					0	0	0		sp|P09724|US20_HCMVATransmembraneproteinHWLF3OS=Humancytomegalovirus(strainAD169)OX=10360GN=US20PE=3SV=4	sp|P09724|US20_HCMVATransmembraneproteinHWLF3OS=Humancytomegalovirus(strainAD169)OX=10360GN=US20PE=3SV=4	sp|P09724|US20_HCMVATransmembraneproteinHWLF3OS=Humancytomegalovirus(strainAD169)OX=10360GN=US20PE=3SV=4	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.89959716796875	3	411.922801	1232.74657	0.49181	0.00020259	2.5639	0.0010561	3.0557	0.0012587	411.92398384554514	41.442	0.21947	41.442	41.33	41.55	0					6	4	2	0	0	0	0.027187	1	2590	2590		9.6461	0	1	15821			51417	32888	42566	42597	55726	55726					0.1395098491943827
RSLWPLPLV	9	Unmodified	_RSLWPLPLV_					0	0	0			REV__ENSG00000204511|ENST00000376191|MCCD1	REV__ENSG00000204511|ENST00000376191|MCCD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.8317260742188	2	540.831852	1079.64915	-2.0025	-0.001083	1.179	0.00063766	-0.82347	-0.00044536	540.8325567076699	124.8	3.4681	123.41	123.02	126.49	-1.3908					189	68	4	0	0	0	0.68424	1	11917	11917		21.96	1.4781	1	9581200	+		51418	23162	42567	42598	55727	55727					0.11251202990615639
RSLWRGNG	8	Unmodified	_RSLWRGNG_					0	0	0		nc|ENSG00000148339|Q6KCM7-2|SLC25A25;ENSG00000148339|ENST00000373069|SLC25A25;nc|ENSG00000148339|Q6KCM7-6|SLC25A25;nc|ENSG00000148339|Q6KCM7|SLC25A25;nc|ENSG00000148339|Q6KCM7-4|SLC25A25;nc|ENSG00000148339|Q6KCM7-5|SLC25A25;SLC25A24|p.V258I|1|0.12|ENSG00000085491|chr1:108155033-108155033|C/T|missense_variant;ENSG00000181240|ENST00000321510|SLC25A41;nc|ENSG00000125648|Q9BV35-4|SLC25A23;nc|ENSG00000125648|Q9BV35-2|SLC25A23;nc|ENSG00000085491|Q6NUK1-2|SLC25A24;ENSG00000125648|ENST00000301454|SLC25A23;ENSG00000085491|ENST00000565488|SLC25A24;nc|ENSG00000125648|Q9BV35-3|SLC25A23	nc|ENSG00000148339|Q6KCM7-2|SLC25A25	nc|ENSG00000148339|Q6KCM7-2|SLC25A25	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.2837219238281	2	473.2543	944.494047	-0.26282	-0.00012438	-0.87236	-0.00041285	-1.1352	-0.00053723	473.2536831089636	53.931	0.31479	53.931	53.733	54.048	0					13	7	2	0	0	0	0.028476	1	4322	4322		24.203	0	1	620940			51419	5401	42568	42599	55728	55728					0.01957971908905165
RSLYKVIESAF	11	Unmodified	_RSLYKVIESAF_					0	0	0			REV__tr|A0A7D7A5Z1|A0A7D7A5Z1_9CLOTType1glutamineamidotransferase-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08025PE=3SV=1	REV__tr|A0A7D7A5Z1|A0A7D7A5Z1_9CLOTType1glutamineamidotransferase-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08025PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	438.2472839355469	3	438.246839	1311.71869	1.181	0.00051758	-1.0337	-0.00045303	0.14727	6.4542E-05	438.2463941604818	43.965	2.0387	41.255	40.758	42.797	-2.7097					118	40	4	0	0	0	0.60035	4	2469	2457;2463;2469;2475		44.639	11.6	1	1317400	+		51420	32646	42569	42600	55729;55730;55731;55732	55731					0.07529617148702528
RSLYKVIESAF	11	Unmodified	_RSLYKVIESAF_					0	0	0			REV__tr|A0A7D7A5Z1|A0A7D7A5Z1_9CLOTType1glutamineamidotransferase-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08025PE=3SV=1	REV__tr|A0A7D7A5Z1|A0A7D7A5Z1_9CLOTType1glutamineamidotransferase-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08025PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	438.24798583984375	3	438.246839	1311.71869	-0.94426	-0.00041382	0.77312	0.00033882	-0.17114	-7.5002E-05	438.24727429837515	44.073	2.9282	41.065	40.326	43.254	-3.0074					162	56	4	0	0	0	0.51772	3	2185	2161;2173;2185		52.167	9.8291	1	4884200	+		51421	32646	42569	42600	55733;55734;55735	55735					0.07529617148702528
RSMALIHIV	9	Unmodified	_RSMALIHIV_					0	0	0			REV__nc|ENSG00000082126|Q96JB8-5|MPP4	REV__nc|ENSG00000082126|Q96JB8-5|MPP4	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.305419921875	2	520.307687	1038.60082	-4.1402	-0.0021542	-0.55554	-0.00028905	-4.6958	-0.0024432	520.3072815468703	153.07	1.2181	151.63	151.24	152.46	-1.4351					76	30	4	0	0	0	0.64427	1	15199	15199		26.693	2.4902	1	318110	+		51422	17080	42570	42601	55736	55736					0.08306386079061667
RSMILSYLL	9	Unmodified	_RSMILSYLL_					0	0	0			REV__ENSG00000149133|ENST00000278409|OR5F1	REV__ENSG00000149133|ENST00000278409|OR5F1	MULTI-SECPEP	OvCa9_classI_Rep2	2	547.7967529296875	2	548.315177	1094.6158	0.0013354	7.322E-07	-3.4551	-0.0018945	-3.4538	-0.0018938	548.3131675255638	106.01	1.0966	105.57	105.35	106.44	-0.43642					53	21	4	0	0	0	0.027353	1	9912	9912		71.877	5.4482	1	158300	+		51423	20145	42571	42602	55737	55737					0.07227833156389352
RSMILSYLL	9	Unmodified	_RSMILSYLL_					0	0	0			REV__ENSG00000149133|ENST00000278409|OR5F1	REV__ENSG00000149133|ENST00000278409|OR5F1	MULTI-SECPEP	OvCa9_classI_Rep3	3	547.7958374023438	2	548.315177	1094.6158	-0.12944	-7.0973E-05	-4.4361	-0.0024324	-4.5656	-0.0025034	548.3126237001455	107.12	1.1011	105.85	105.57	106.68	-1.267					42	21	3	0	0	0	0.027304	1	7625	7625		87.696	10.922	1	182230	+		51424	20145	42571	42602	55738	55738					0.07227833156389352
RSMILSYLL	9	Unmodified	_RSMILSYLL_					0	0	0			REV__ENSG00000149133|ENST00000278409|OR5F1	REV__ENSG00000149133|ENST00000278409|OR5F1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.7962036132812	2	548.315177	1094.6158	-2.2096	-0.0012116	-1.6074	-0.00088135	-3.817	-0.0020929	548.3141863392506	107.63	1.0766	105.75	105.49	106.56	-1.8785					45	21	3	0	0	0	0.027185	1	9868	9868		93.195	8.2799	1	194750	+		51425	20145	42571	42602	55739	55739					0.07227833156389352
RSMKRKALF	9	Unmodified	_RSMKRKALF_					0	0	0		ENSG00000111424|ENST00000549336|VDR;ENST00000547065.1_1_12:48238531-48272768:-|nuORF;nc|ENSG00000111424|P11473-2|VDR	ENSG00000111424|ENST00000549336|VDR	ENSG00000111424|ENST00000549336|VDR	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.2542724609375	2	568.839685	1135.66482	2.7071	0.0015399	-3.6308	-0.0020654	-0.9237	-0.00052544	568.8376034179774	94.115	0.34087	94.115	93.923	94.264	0					11	7	2	0	0	0	0.027462	1	10226	10226		35.618	3.6634	1	250250			51426	2825	42572	42603	55740	55740					0.10241166235982746
RSMVHKDN	8	Unmodified	_RSMVHKDN_					0	0	0			REV__nc|ENSG00000114346|Q9H8V3-2|ECT2	REV__nc|ENSG00000114346|Q9H8V3-2|ECT2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.7781066894531	2	493.74545	985.476348	0.025828	1.2753E-05	-4.3502	-0.0021479	-4.3244	-0.0021351	493.7430852455541	76.291	0.51729	73.352	73.128	73.645	-2.9389					16	10	2	0	0	0	0.028476	1	6069	6069		24.519	0	1	34383	+		51427	16038	42573	42604	55741	55741					-0.016971114082707572
RSMVKRHI	8	Unmodified	_RSMVKRHI_					0	0	0			REV__ENST00000413279.1_1_2:136269117-136269381:-|nuORF	REV__ENST00000413279.1_1_2:136269117-136269381:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.2847290039062	2	513.803103	1025.59165	0.23673	0.00012163	-2.3016	-0.0011826	-2.0649	-0.0010609	514.3044181298354	45.37	0.25477	45.37	45.159	45.413	0					6	5	2	0	0	0	0.028476	1	3120	3120		16.473	0	1	24716	+		51428	25507	42574	42605	55742	55742					0.07988037513405288
RSMVVIEVF	9	Unmodified	_RSMVVIEVF_					0	0	0		nc|ENSG00000153815|Q8IY22-3|CMIP;nc|ENSG00000153815|Q8IY22-2|CMIP;ENSG00000153815|ENST00000537098|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	nc|ENSG00000153815|Q8IY22-3|CMIP	MULTI-MSMS	OvCa9_classI_Rep2	2	540.2981567382812	2	540.299527	1078.5845	-1.8908	-0.0010216	-0.97544	-0.00052703	-2.8662	-0.0015486	540.2989536670705	38.535	2.9688	35.825	35.469	38.438	-2.7097					158	59	5	0	0	0	0.5811	2	1857	1857;1863		34.173	3.6689	1	1380400			51429	5695	42575	42606	55743;55744	55743					0.04835260122285945
RSNAAKLALD	10	Unmodified	_RSNAAKLALD_					0	0	0		nc|ENSG00000164113|Q96M93-3|ADAD1;nc|ENSG00000164113|Q96M93-2|ADAD1;ENSG00000164113|ENST00000296513|ADAD1	nc|ENSG00000164113|Q96M93-3|ADAD1	nc|ENSG00000164113|Q96M93-3|ADAD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.8202514648438	2	529.80128	1057.58801	2.0091	0.0010644	-3.0911	-0.0016377	-1.082	-0.00057327	529.7996358266817	100.01	0.4567	100.01	99.736	100.19	0					16	10	2	0	0	0	0.02706	1	11060	11060		17.468	0	1	290890			51430	6412	42576	42607	55745	55745					0.06151646220496332
RSNAQAVVY	9	Unmodified	_RSNAQAVVY_					0	0	0			REV__tr|A0A553SHC2|A0A553SHC2_NIACIDNA-directedRNApolymerasesubunitbetaOS=NialliacirculansOX=1397GN=rpoBPE=3SV=1	REV__tr|A0A553SHC2|A0A553SHC2_NIACIDNA-directedRNApolymerasesubunitbetaOS=NialliacirculansOX=1397GN=rpoBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.2325744628906	2	504.267073	1006.51959	-0.43071	-0.00021719	1.8616	0.00093873	1.4309	0.00072154	504.2672262202299	38.962	0.58363	38.962	38.836	39.42	0					11	9	2	0	0	0	0.027462	1	2299	2299		10.265	3.0719	1	206700	+		51431	29789	42577	42608	55746	55746					0.016594016406543233
RSNCLRGDQV	10	Carbamidomethyl (C)	_RSNC(Carbamidomethyl (C))LRGDQV_	RSNC(1)LRGDQV		RSNC(70)LRGDQV		0	1	0			REV__ENST00000513818.1_1_3:133337003-133343000:-|nuORF	REV__ENST00000513818.1_1_3:133337003-133343000:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	602.7997436523438	2	602.796203	1203.57785	1.3798	0.00083174	3.4799	0.0020977	4.8597	0.0029294	602.798245176616	115.09	1.536	115.09	114.6	116.14	0					107	32	5	0	0	0	0.39172	1	13179	13179		69.628	11.398	1	3934000	+		51432	20885	42578	42609	55747	55747	230				-0.015792847763805185
RSNDIAIQLI	10	Unmodified	_RSNDIAIQLI_					0	0	0			REV__ENSG00000113569|ENST00000231498|NUP155	REV__ENSG00000113569|ENST00000231498|NUP155	MULTI-MSMS	OvCa99_classI_Rep5	1	571.8311767578125	2	571.830037	1141.64552	-0.059094	-3.3792E-05	-0.50405	-0.00028823	-0.56314	-0.00032202	571.829735182503	57.073	1.1146	57.073	56.744	57.859	0					65	25	6	0	0	0	0.09252	1	4786	4786		115.49	6.0157	1	8209600	+		51433	18157	42579	42610	55748	55748					0.08036488426091637
RSNEAQQRG	9	Unmodified	_RSNEAQQRG_					0	0	0		ENST00000553345.5_1_20:31018962-31019163:+|nuORF	ENST00000553345.5_1_20:31018962-31019163:+|nuORF	ENST00000553345.5_1_20:31018962-31019163:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.314208984375	2	523.260311	1044.50607	-0.43351	-0.00022684	-4.4341	-0.0023202	-4.8676	-0.002547	523.2579329056899	47.42	0.80881	44.312	43.875	44.684	-3.1077					23	15	2	0	0	0	0.027462	1	2560	2560		40.778	6.6056	1	30485			51434	13624	42580	42611	55749	55749					-0.014404561385845227
RSNEHIREL	9	Unmodified	_RSNEHIREL_					0	0	0		nc|ENSG00000122359|P50995-2|ANXA11;ENSG00000122359|ENST00000422982|ANXA11	nc|ENSG00000122359|P50995-2|ANXA11	nc|ENSG00000122359|P50995-2|ANXA11	MULTI-MSMS	OvCa9_classI_Rep2	2	577.3067016601562	2	577.307261	1152.59997	-1.4178	-0.00081848	1.0085	0.00058219	-0.4093	-0.00023629	577.3077489952981	39.242	0.99163	36.532	36.31	37.302	-2.7097					59	19	4	0	0	0	0.13326	3	1901	1891;1896;1901		88.177	17.653	1	269270			51435	3527	42581	42612	55750;55751;55752	55752					0.02977262963713656
RSNEHIREL	9	Unmodified	_RSNEHIREL_					0	0	0		nc|ENSG00000122359|P50995-2|ANXA11;ENSG00000122359|ENST00000422982|ANXA11	nc|ENSG00000122359|P50995-2|ANXA11	nc|ENSG00000122359|P50995-2|ANXA11	MULTI-MSMS	OvCa9_classI_Rep4_	4	577.30712890625	2	577.307261	1152.59997	-0.73929	-0.0004268	0.064231	3.7081E-05	-0.67506	-0.00038972	577.3072792887777	39.495	1.5209	36.569	36.296	37.817	-2.9264					91	29	4	0	0	0	0.13011	1	1617	1617		89.029	9.5398	1	892530			51436	3527	42581	42612	55753	55753					0.02977262963713656
RSNFYKLLD	9	Unmodified	_RSNFYKLLD_					0	0	0			REV__nc|ENSG00000143952|Q9P1Q0-4|VPS54;REV__nc|ENSG00000143952|Q9P1Q0-3|VPS54	REV__nc|ENSG00000143952|Q9P1Q0-4|VPS54	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.8331909179688	2	578.31148	1154.60841	-0.24089	-0.00013931	0.52878	0.0003058	0.28789	0.00016649	578.3111695122418	32.359	0.29842	32.359	32.105	32.403	0					8	5	2	0	0	0	0.027462	1	1380	1380		27.882	0	1	11199	+		51437	19878;28903	42582	42613	55754	55754					0.03728816880334307
RSNHSTFGIL	10	Unmodified	_RSNHSTFGIL_					0	0	0		ENST00000472839.6_1_12:92823403-92823508:+|nuORF	ENST00000472839.6_1_12:92823403-92823508:+|nuORF	ENST00000472839.6_1_12:92823403-92823508:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	566.2974243164062	2	566.298904	1130.58326	-0.94412	-0.00053466	-1.3727	-0.00077734	-2.3168	-0.001312	566.2979066209101	99.965	2.3305	99.134	98.418	100.75	-0.83051					77	46	4	0	0	0	0.53807	1	9197	9197		49.536	1.6204	1	343040			51438	12398	42583	42614	55755	55755					0.023187620777889606
RSNIHSINN	9	Unmodified	_RSNIHSINN_					0	0	0			REV__nc|ENSG00000165359|Q5JSJ4|INTS6L	REV__nc|ENSG00000165359|Q5JSJ4|INTS6L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.2828979492188	2	527.773054	1053.53155	-0.99632	-0.00052583	-2.0563	-0.0010853	-3.0527	-0.0016111	527.7716147277736	77.425	0.82267	74.608	74.342	75.165	-2.8165					27	16	2	0	0	0	0.027462	1	6220	6220		30.318	2.4355	1	84019	+		51439	21083	42584	42615	55756	55756					0.006930183838449011
RSNIHSINN	9	Unmodified	_RSNIHSINN_					0	0	0			REV__nc|ENSG00000165359|Q5JSJ4|INTS6L	REV__nc|ENSG00000165359|Q5JSJ4|INTS6L	MULTI-MATCH	OvCa9_classI_Rep2	2		2	527.773054	1053.53155	-0.97689	-0.00051557	0.71419	0.00037693	-0.2627	-0.00013865	528.2766198290591	76.582	0.88525	74.728	74.414	75.299	-1.854	0.037033	0.0035194	NaN	47.96	31	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20368	+		51440	21083	42584	42615							0.006930183838449011
RSNIRPVVN	9	Unmodified	_RSNIRPVVN_					0	0	0			REV__ENST00000438277.5_1_2:128855105-128928859:+|nuORF	REV__ENST00000438277.5_1_2:128855105-128928859:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	527.7963256835938	2	527.809439	1053.60433	0.36965	0.0001951	-0.98723	-0.00052107	-0.61758	-0.00032597	527.8087760939272	45.674	0.39347	45.674	45.496	45.89	0					22	8	3	0	0	0	0.44568	1	3182	3182		47.657	0	1	421510	+		51441	19402	42585	42616	55757	55757					0.07966772177269377
RSNIRPVVN	9	Unmodified	_RSNIRPVVN_					0	0	0			REV__ENST00000438277.5_1_2:128855105-128928859:+|nuORF	REV__ENST00000438277.5_1_2:128855105-128928859:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	527.809439	1053.60433	-1.0762	-0.00056805	2.8901	0.0015254	1.8139	0.00095739	527.8080234565102	47.996	0.64539	45.286	45.034	45.679	-2.7097	-0.19399	0.0038036	NaN	47.657	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10048	+		51442	19402	42585	42616							0.07966772177269377
RSNKDLEEL	9	Unmodified	_RSNKDLEEL_					0	0	0			REV__nc|ENSG00000100298|Q6NTF7-2|APOBEC3H	REV__nc|ENSG00000100298|Q6NTF7-2|APOBEC3H	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.32958984375	2	552.288202	1102.56185	-0.47056	-0.00025989	0.32368	0.00017876	-0.14688	-8.1122E-05	552.288277160636	42.687	0.98272	42.687	42.453	43.435	0					56	22	4	0	0	0	0.027462	1	2750	2750		39.253	3.6345	1	3313400	+		51443	17394	42586	42617	55758	55758					0.014673322583803383
RSNLSLLLK	9	Unmodified	_RSNLSLLLK_					0	0	0		ENST00000544850.5_1_12:10758876-10761762:-|nuORF	ENST00000544850.5_1_12:10758876-10761762:-|nuORF	ENST00000544850.5_1_12:10758876-10761762:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.314208984375	2	522.332216	1042.64988	-0.27213	-0.00014214	-1.069	-0.00055837	-1.3411	-0.00070051	522.3314902430493	47.582	1.0075	44.475	44.133	45.141	-3.1077					35	19	2	0	0	0	0.027461	1	2560	2560		58.782	38.785	1	75895			51444	13512	42587	42618	55759	55759					0.13025997639647358
RSNLSLLLK	9	Unmodified	_RSNLSLLLK_					0	0	0		ENST00000544850.5_1_12:10758876-10761762:-|nuORF	ENST00000544850.5_1_12:10758876-10761762:-|nuORF	ENST00000544850.5_1_12:10758876-10761762:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	522.332216	1042.64988	-0.16922	-8.8388E-05	-0.43772	-0.00022863	-0.60694	-0.00031702	522.3319274863964	47.059	1.0406	44.349	43.993	45.034	-2.7097	-0.062547	0.00022541	NaN	54.776	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36162			51445	13512	42587	42618							0.13025997639647358
RSNNKILLI	9	Unmodified	_RSNNKILLI_					0	0	0		tr|A0A553SQW2|A0A553SQW2_NIACICPBPfamilyintramembranemetalloproteaseOS=NialliacirculansOX=1397GN=CEQ21_07400PE=4SV=1	tr|A0A553SQW2|A0A553SQW2_NIACICPBPfamilyintramembranemetalloproteaseOS=NialliacirculansOX=1397GN=CEQ21_07400PE=4SV=1	tr|A0A553SQW2|A0A553SQW2_NIACICPBPfamilyintramembranemetalloproteaseOS=NialliacirculansOX=1397GN=CEQ21_07400PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	535.8143310546875	2	535.837665	1069.66078	0.20578	0.00011027	-1.6399	-0.00087874	-1.4342	-0.00076847	535.8367106509247	95.812	1.6629	93.984	93.682	95.345	-1.8286					48	32	2	0	0	0	0.027462	1	6338	6338		27.882	0	1	91762			51446	34205	42588	42619	55760	55760					0.1287340001395023
RSNPFGMV	8	Unmodified	_RSNPFGMV_					0	0	0			REV__nc|ENSG00000100298|Q6NTF7-4|APOBEC3H	REV__nc|ENSG00000100298|Q6NTF7-4|APOBEC3H	MULTI-SECPEP	OvCa99_classI_Rep5	1	454.7828063964844	2	454.226362	906.438172	-1.0287	-0.00046725	1.4444	0.00065607	0.4157	0.00018882	454.2286167515773	70.067	0.24152	70.067	70.005	70.246	0					6	5	2	0	0	0	0.028476	1	6710	6710		42.474	12.633	1	105690	+		51447	28767	42589	42620	55761	55761					-0.01878997322921805
RSNPYIQLGIS	11	Unmodified	_RSNPYIQLGIS_					0	0	0		ENSG00000139517|ENST00000316334|LNX2	ENSG00000139517|ENST00000316334|LNX2	ENSG00000139517|ENST00000316334|LNX2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	415.722900390625	3	416.562938	1246.66699	0.73964	0.00030811	-0.92785	-0.00038651	-0.18821	-7.8401E-05	416.56257713194043	68.216	0.88344	64.726	64.478	65.362	-3.4902					24	17	2	0	0	0	0.025908	1	5021	5021		16.53	0	1	36953			51448	4779	42590	42621	55762	55762					0.053518734548106295
RSNPYIQLGIS	11	Unmodified	_RSNPYIQLGIS_					0	0	0		ENSG00000139517|ENST00000316334|LNX2	ENSG00000139517|ENST00000316334|LNX2	ENSG00000139517|ENST00000316334|LNX2	MULTI-MATCH	OvCa9_classI_Rep2	2		3	416.562938	1246.66699	0.0049098	2.0453E-06	0.056491	2.3532E-05	0.061401	2.5577E-05	416.56303717697926	67.298	0.84168	64.637	64.298	65.139	-2.661	-0.044622	0.00085338	NaN	27.644	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20452			51449	4779	42590	42621							0.053518734548106295
RSNRAVIRGL	10	Unmodified	_RSNRAVIRGL_					0	0	0			REV__ENSG00000166592|ENST00000299759|RRAD	REV__ENSG00000166592|ENST00000299759|RRAD	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.8294677734375	2	571.349263	1140.68397	-0.015132	-8.6459E-06	3.4618	0.0019779	3.4466	0.0019692	571.3511916566323	52.852	0.56515	52.852	52.566	53.131	0					28	12	4	0	0	0	0.026659	1	4183	4183		45.972	6.7194	1	1087000	+		51450	21208	42591	42622	55763	55763					0.11925838851288972
RSNRDGTISH	10	Unmodified	_RSNRDGTISH_					0	0	0			REV__nc|ENSG00000167772|Q9BY76-3|ANGPTL4	REV__nc|ENSG00000167772|Q9BY76-3|ANGPTL4	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.7967529296875	2	571.786693	1141.55883	-0.67851	-0.00038796	-2.735	-0.0015638	-3.4135	-0.0019518	571.7849671253362	33.829	0.67922	33.829	33.434	34.113	0					20	13	2	0	0	0	0.026782	1	1606	1606		30.318	4.7437	1	25908	+		51451	15631	42592	42623	55764	55764					-0.006284980757527592
RSNRVIKV	8	Unmodified	_RSNRVIKV_					0	0	0			REV__ENST00000424720.2_12:132824120-132905933:-|nuORF	REV__ENST00000424720.2_12:132824120-132905933:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	486.30865478515625	2	486.309075	970.603597	-0.18045	-8.7756E-05	-1.1185	-0.00054395	-1.299	-0.00063171	486.3086617029968	30.458	2.1167	30.458	30.236	32.353	0					101	42	5	0	0	0	0.57734	2	1159	1159;1180		68.787	11.971	1	12226000	+		51452	22323	42593	42624	55765;55766	55765					0.11711977528227635
RSNSSKAGVSQ	11	Unmodified	_RSNSSKAGVSQ_					0	0	0		ENSG00000214842|ENST00000399080|RAD51AP2;RAD51AP2|p.N321Kfs*26|1|0.05|ENSG00000214842|chr2:17517453-17517454|-/CT|frameshift_variant	ENSG00000214842|ENST00000399080|RAD51AP2	ENSG00000214842|ENST00000399080|RAD51AP2	MULTI-MSMS	OvCa9_classI_Rep2	2	560.7896118164062	2	560.788901	1119.56325	0.076238	4.2753E-05	3.2089	0.0017995	3.2852	0.0018423	560.7906951341574	64.273	2.9179	61.548	60.968	63.886	-2.7245					181	56	6	0	0	0	0.46188	1	4936	4936		56.632	16.574	1	2758800			51453	9185	42594	42625	55767	55767					0.008249663471360691
RSNVVEHF	8	Unmodified	_RSNVVEHF_					0	0	0		ENSG00000172362|ENST00000641921|OR5B12	ENSG00000172362|ENST00000641921|OR5B12	ENSG00000172362|ENST00000641921|OR5B12	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3193054199219	2	494.253966	986.493378	0.17005	8.4046E-05	-1.0739	-0.00053076	-0.90381	-0.00044671	494.25338168967323	104.77	0.77917	103.43	103.21	103.99	-1.3482					25	14	2	0	0	0	0.028476	1	7320	7320		21.96	0	1	55229			51454	7293	42595	42626	55768	55768					-0.0004086753081082861
RSNYGMVL	8	Unmodified	_RSNYGMVL_					0	0	0		tr|A0A7D6VTG9|A0A7D6VTG9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07960PE=4SV=1	tr|A0A7D6VTG9|A0A7D6VTG9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07960PE=4SV=1	tr|A0A7D6VTG9|A0A7D6VTG9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07960PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	469.593505859375	2	470.23947	938.464386	-0.18687	-8.7874E-05	-2.1406	-0.0010066	-2.3275	-0.0010945	470.23776357079805	48.998	0.40098	48.998	48.718	49.119	0					15	8	3	0	0	0	0.028476	1	3636	3636		19.36	7.1531	1	168360			51455	35115	42596	42627	55769	55769					-0.007307281514613351
RSPAAYWEN	9	Unmodified	_RSPAAYWEN_					0	0	0		chr15:53523322-53540662|224|18.24|0.17|6.76|-|2|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|80	chr15:53523322-53540662|224|18.24|0.17|6.76|-|2|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|80	chr15:53523322-53540662|224|18.24|0.17|6.76|-|2|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|80	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.2869873046875	2	547.256705	1092.49886	-0.2295	-0.0001256	1.6279	0.00089086	1.3984	0.00076526	547.7603910719948	56.592	0.20459	56.592	56.498	56.702	0					6	4	2	0	0	0	0.027462	1	4703	4703		26.693	5.746	1	184280			51456	360	42597	42628	55770	55770					-0.04369188738996854
RSPALRLSL	9	Unmodified	_RSPALRLSL_					0	0	0		ENST00000595295.1_1_19:58369960-58370206:-|nuORF	ENST00000595295.1_1_19:58369960-58370206:-|nuORF	ENST00000595295.1_1_19:58369960-58370206:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.29583740234375	2	506.816733	1011.61891	-1.8369	-0.00093097	1.8303	0.0009276	-0.0066361	-3.3633E-06	506.81753667905105	50.3	0.52184	47.158	46.974	47.496	-3.1416					17	9	2	0	0	0	0.027462	1	2872	2872		9.1829	0.48922	1	56564			51457	14172	42598	42629	55771	55771					0.11356844325405291
RSPALRLSL	9	Unmodified	_RSPALRLSL_					0	0	0		ENST00000595295.1_1_19:58369960-58370206:-|nuORF	ENST00000595295.1_1_19:58369960-58370206:-|nuORF	ENST00000595295.1_1_19:58369960-58370206:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	506.816733	1011.61891	-1.369	-0.00069384	1.0651	0.00053983	-0.30388	-0.00015401	506.8170935735592	49.969	0.54698	47.175	46.933	47.48	-2.794	0.0085447	-0.00039766	NaN	2.3455	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16395			51458	14172	42598	42629							0.11356844325405291
RSPCSELLL	9	Unmodified	_RSPCSELLL_					0	0	0		ENST00000576921.1_1_16:3072866-3073436:-|nuORF;nc|ENSG00000103145|Q9NWW0-2|HCFC1R1;ENSG00000103145|ENST00000248089|HCFC1R1	ENST00000576921.1_1_16:3072866-3073436:-|nuORF	ENST00000576921.1_1_16:3072866-3073436:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.81500244140625	2	509.273509	1016.53247	-0.70513	-0.0003591	-1.8403	-0.00093724	-2.5455	-0.0012963	509.27247997477554	75.155	1.7103	73.184	72.586	74.297	-1.9711					92	32	4	0	0	0	0.027247	1	6123	6123		79.713	37.316	1	314710			51459	2284	42599	42630	55772	55772					0.02486096708560126
RSPCSELLL	9	Unmodified	_RSPCSELLL_					0	0	0		ENST00000576921.1_1_16:3072866-3073436:-|nuORF;nc|ENSG00000103145|Q9NWW0-2|HCFC1R1;ENSG00000103145|ENST00000248089|HCFC1R1	ENST00000576921.1_1_16:3072866-3073436:-|nuORF	ENST00000576921.1_1_16:3072866-3073436:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.8136291503906	2	509.273509	1016.53247	-0.74044	-0.00037709	-1.7102	-0.00087097	-2.4507	-0.0012481	509.2730092484632	75.113	1.8634	72.702	72.34	74.204	-2.4106					95	36	4	0	0	0	0.027403	1	3744	3744		79.713	5.4575	1	960320			51460	2284	42599	42630	55773	55773					0.02486096708560126
RSPEPTEIS	9	Unmodified	_RSPEPTEIS_					0	0	0		ENSG00000168386|ENST00000477258|FILIP1L;nc|ENSG00000168386|Q4L180-6|FILIP1L;nc|ENSG00000168386|Q4L180-5|FILIP1L;nc|ENSG00000168386|Q4L180-3|FILIP1L;nc|ENSG00000168386|Q4L180-7|FILIP1L;nc|ENSG00000168386|Q4L180-2|FILIP1L;nc|ENSG00000168386|Q4L180|FILIP1L	ENSG00000168386|ENST00000477258|FILIP1L	ENSG00000168386|ENST00000477258|FILIP1L	MULTI-MSMS	OvCa99_classI_Rep5	1	508.26055908203125	2	508.256371	1014.49819	1.4432	0.00073349	3.7638	0.001913	5.207	0.0026465	508.258195266308	115.22	0.37119	115.22	115.02	115.39	0					16	7	3	0	0	0	0.5811	1	13162	13162		34.173	0.65696	1	75940			51461	6898	42600	42631	55774	55774					-0.008480281787115018
RSPGGPGAL	9	Unmodified	_RSPGGPGAL_					0	0	0		ENST00000314980.4_1_19:39282329-39282371:+|nuORF	ENST00000314980.4_1_19:39282329-39282371:+|nuORF	ENST00000314980.4_1_19:39282329-39282371:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	406.2020263671875	2	406.224677	810.434801	-0.78806	-0.00032013	0.76341	0.00031011	-0.024655	-1.0016E-05	406.22496783396707	49.7	0.62008	46.558	46.2	46.82	-3.1416					17	11	2	0	0	0	0.027279	1	2793	2793		71.296	13.484	1	12509			51462	10329	42601	42632	55775	55775					0.022000758947001486
RSPGSAQSLGK	11	Unmodified	_RSPGSAQSLGK_					0	0	0		nc|ENSG00000061492|Q9H1J5|WNT8A;ENSG00000061492|ENST00000506684|WNT8A	nc|ENSG00000061492|Q9H1J5|WNT8A	nc|ENSG00000061492|Q9H1J5|WNT8A	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.2800903320312	2	544.296362	1086.57817	-0.53857	-0.00029314	-2.051	-0.0011163	-2.5895	-0.0014095	544.2953321323414	36.007	0.31828	36.007	35.892	36.211	0					11	6	2	0	0	0	0.025864	1	1854	1854		14.694	0	1	49405			51463	1270	42602	42633	55776	55776					0.038344582151466966
RSPGTVTVQ	9	Unmodified	_RSPGTVTVQ_					0	0	0			REV__ENSG00000175727|ENST00000319080|MLXIP;REV__nc|ENSG00000175727|Q9HAP2-4|MLXIP	REV__ENSG00000175727|ENST00000319080|MLXIP	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.2827453613281	2	472.761623	943.508694	-0.24897	-0.0001177	1.2151	0.00057447	0.96618	0.00045677	472.76210207299926	54.217	0.41438	54.217	54.008	54.422	0					13	9	2	0	0	0	0.027462	1	4351	4351		19.104	0	1	133710	+		51464	21911;29017	42603	42634	55777	55777					0.034679992663768644
RSPLHLGHW	9	Unmodified	_RSPLHLGHW_					0	0	0		ENST00000531523.1_1_16:2015108-2015429:+|nuORF	ENST00000531523.1_1_16:2015108-2015429:+|nuORF	ENST00000531523.1_1_16:2015108-2015429:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.8488159179688	2	551.798875	1101.5832	2.0149	0.0011118	-0.51959	-0.00028671	1.4953	0.0008251	551.7985197546062	100.44	0.41549	100.44	100.19	100.61	0					15	9	2	0	0	0	0.027433	1	11118	11118		34.173	9.6534	1	360150			51465	13307	42604	42635	55778	55778					0.03646806868414387
RSPLLIIGGI	10	Unmodified	_RSPLLIIGGI_					0	0	0		tr|A0A553SGH3|A0A553SGH3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10835PE=4SV=1	tr|A0A553SGH3|A0A553SGH3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10835PE=4SV=1	tr|A0A553SGH3|A0A553SGH3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10835PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	519.8377075195312	2	519.837134	1037.65972	-0.37451	-0.00019468	-0.31686	-0.00016472	-0.69137	-0.0003594	519.837033996742	116.26	1.1854	115.22	114.85	116.03	-1.0414					35	23	2	0	0	0	0.55359	1	8678	8678		47.657	6.8792	1	114840			51466	33157	42605	42636	55779	55779					0.1423918564505584
RSPLLIIGGI	10	Unmodified	_RSPLLIIGGI_					0	0	0		tr|A0A553SGH3|A0A553SGH3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10835PE=4SV=1	tr|A0A553SGH3|A0A553SGH3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10835PE=4SV=1	tr|A0A553SGH3|A0A553SGH3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10835PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.7979125976562	2	519.837134	1037.65972	-1.0313	-0.00053612	0.015924	8.278E-06	-1.0154	-0.00052785	519.8368099793706	80.339	1.0755	77.628	77.075	78.15	-2.7106					44	21	3	0	0	0	0.026659	1	6548	6548		54.776	0	1	136770			51467	33157	42605	42636	55780	55780					0.1423918564505584
RSPLPVTTV	9	Unmodified	_RSPLPVTTV_					0	0	0		ENST00000396056.6_1_3:44700855-44701443:+|nuORF	ENST00000396056.6_1_3:44700855-44701443:+|nuORF	ENST00000396056.6_1_3:44700855-44701443:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.7757873535156	2	485.290017	968.565481	-0.72397	-0.00035134	0.077997	3.7851E-05	-0.64597	-0.00031348	485.28983060113626	92.078	1.7648	89.535	89.212	90.976	-2.5425					54	34	3	0	0	0	0.027461	1	8145	8145		32.812	0	1	128900			51468	11309	42606	42637	55781	55781					0.07994046822909695
RSPNLQLIE	9	Unmodified	_RSPNLQLIE_					0	0	0		ENST00000530314.5_1_16:70543112-70557304:-|nuORF	ENST00000530314.5_1_16:70543112-70557304:-|nuORF	ENST00000530314.5_1_16:70543112-70557304:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	535.3060913085938	2	535.303655	1068.59276	-0.78369	-0.00041951	2.9112	0.0015584	2.1275	0.0011389	535.3053210822743	109.88	1.1377	109.71	109.41	110.55	-0.17237					58	22	3	0	0	0	0.48047	1	10332	10332		44.377	0.26039	1	92569			51469	13288	42607	42638	55782	55782					0.06120530363295984
RSPNLQLIE	9	Unmodified	_RSPNLQLIE_					0	0	0		ENST00000530314.5_1_16:70543112-70557304:-|nuORF	ENST00000530314.5_1_16:70543112-70557304:-|nuORF	ENST00000530314.5_1_16:70543112-70557304:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	535.303655	1068.59276	1.9138	0.0010244	-0.16472	-8.8175E-05	1.749	0.00093627	535.303652918185	111.11	1.1472	110	109.6	110.75	-1.1038	0.077962	-0.0020479	NaN	44.377	54	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88249			51470	13288	42607	42638							0.06120530363295984
RSPNPRASP	9	Unmodified	_RSPNPRASP_					0	0	0		ENSG00000139767|ENST00000267260|SRRM4	ENSG00000139767|ENST00000267260|SRRM4	ENSG00000139767|ENST00000267260|SRRM4	MSMS	OvCa99_classI_Rep5	1	491.26483154296875	2	491.264865	980.515176	NaN	NaN	NaN	NaN	NaN	NaN	NaN	26.81	1	26.81	26.31	27.31	0								0	0	0	0.20617	1	734	734		25.574	1.3713	1				51471	4804	42608	42639	55783	55783					0.024139372177501173
RSPQEPLLQ	9	Unmodified	_RSPQEPLLQ_					0	0	0		ENST00000513154.5_1_5:114505459-114505627:-|nuORF	ENST00000513154.5_1_5:114505459-114505627:-|nuORF	ENST00000513154.5_1_5:114505459-114505627:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.3338623046875	2	534.29583	1066.57711	-0.069563	-3.7167E-05	0.022514	1.2029E-05	-0.047049	-2.5138E-05	534.2956994155912	69.117	1.1066	69.117	68.733	69.84	0					50	26	3	0	0	0	0.027411	1	6643	6643		58.23	8.7884	1	1310400			51472	13009	42609	42640	55784	55784					0.04648243846236255
RSPQHRPHP	9	Unmodified	_RSPQHRPHP_					0	0	0			REV__HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|165|3|sense	REV__HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|165|3|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	556.2962036132812	2	556.29703	1110.57951	-0.52913	-0.00029435	-0.97042	-0.00053984	-1.4995	-0.00083419	556.2964454515957	28.464	0.5488	28.464	28.24	28.789	0					13	10	2	0	0	0	0.42676	1	937	937		49.442	1.7842	1	179370	+		51473	28238	42610	42641	55785	55785					0.028641370945706512
RSPQILVPTL	10	Unmodified	_RSPQILVPTL_					0	0	0		HEATR1|p.P2064Hfs*2|1|0.04|ENSG00000119285|chr1:236553627-236553627|G/-|frameshift_variant;ENSG00000119285|ENST00000366582|HEATR1;HEATR1|p.G1956Wfs*9|1|0.04|ENSG00000119285|chr1:236555353-236555354|-/A|frameshift_variant	HEATR1|p.P2064Hfs*2|1|0.04|ENSG00000119285|chr1:236553627-236553627|G/-|frameshift_variant	HEATR1|p.P2064Hfs*2|1|0.04|ENSG00000119285|chr1:236553627-236553627|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	563.286865234375	2	562.345323	1122.67609	0.49207	0.00027671	-3.1262	-0.001758	-2.6342	-0.0014813	562.3435313131062	40.582	1.0356	37.872	37.452	38.487	-2.7097					35	20	2	0	0	0	0.026688	1	2107	2107		40.778	15.204	1	57354			51474	3350	42611	42642	55786	55786					0.11966266811145942
RSPQSVLDL	9	Unmodified	_RSPQSVLDL_					0	0	0			REV__nc|ENSG00000133433|P0CG29|GSTT2	REV__nc|ENSG00000133433|P0CG29|GSTT2	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.32769775390625	2	507.782556	1013.55056	-0.65431	-0.00033225	-0.7258	-0.00036855	-1.3801	-0.0007008	507.78243786779416	65.447	0.56036	65.447	65.271	65.831	0					23	13	2	0	0	0	0.027462	1	6004	6004		24.519	0	1	1449100	+		51475	19146	42612	42643	55787	55787					0.04432554954905754
RSPRAGFGNE	10	Unmodified	_RSPRAGFGNE_					0	0	0			REV__tr|A0A553ST32|A0A553ST32_NIACISugarkinaseOS=NialliacirculansOX=1397GN=CEQ21_04090PE=4SV=1	REV__tr|A0A553ST32|A0A553ST32_NIACISugarkinaseOS=NialliacirculansOX=1397GN=CEQ21_04090PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.3143920898438	2	545.773054	1089.53155	-0.13998	-7.6399E-05	-2.4133	-0.0013171	-2.5532	-0.0013935	545.7722398314426	52.464	0.39328	52.464	52.304	52.697	0					19	8	3	0	0	0	0.026906	1	4123	4123		41.427	7.2541	1	270660	+		51476	30910	42613	42644	55788	55788					-0.009629816161577764
RSPRAGFGNE	10	Unmodified	_RSPRAGFGNE_					0	0	0			REV__tr|A0A553ST32|A0A553ST32_NIACISugarkinaseOS=NialliacirculansOX=1397GN=CEQ21_04090PE=4SV=1	REV__tr|A0A553ST32|A0A553ST32_NIACISugarkinaseOS=NialliacirculansOX=1397GN=CEQ21_04090PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	545.773054	1089.53155	-0.88995	-0.00048571	-2.8614	-0.0015617	-3.7514	-0.0020474	545.7698096929176	55.984	0.20206	52.69	52.567	52.769	-3.2944	0.11277	-0.00019762	NaN	33.922	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8521.8	+		51477	30910	42613	42644							-0.009629816161577764
RSPRAVRTE	9	Unmodified	_RSPRAVRTE_					0	0	0			REV__ENST00000306627.7_1_3:23847461-23848768:+|nuORF	REV__ENST00000306627.7_1_3:23847461-23848768:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.29296875	2	536.304521	1070.59449	2.2921	0.0012293	-0.66522	-0.00035676	1.6269	0.0008725	536.3049825036899	101	1.011	101	100.86	101.87	0					29	23	2	0	0	0	0.027462	1	11326	11326		23.523	0	1	1471000	+		51478	24298	42614	42645	55789	55789					0.062015841718903175
RSPRIKQLS	9	Unmodified	_RSPRIKQLS_					0	0	0		ENSG00000140534|ENST00000268138|TICRR;nc|ENSG00000140534|Q7Z2Z1-2|TICRR	ENSG00000140534|ENST00000268138|TICRR	ENSG00000140534|ENST00000268138|TICRR	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.7982788085938	2	542.832914	1083.65128	-0.67286	-0.00036525	2.7058	0.0014688	2.0329	0.0011035	542.8348943417517	78.006	0.34184	75.19	75.067	75.409	-2.8165					10	6	2	0	0	0	0.027461	1	6285	6285		40.778	5.1599	1	17105			51479	4857	42615	42646	55790	55790					0.11279631728416462
RSPRIRTP	8	Unmodified	_RSPRIRTP_					0	0	0		ENST00000378163.5_1_X:41782342-41782579:-|nuORF	ENST00000378163.5_1_X:41782342-41782579:-|nuORF	ENST00000378163.5_1_X:41782342-41782579:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	491.7986755371094	2	491.798875	981.583196	-0.60403	-0.00029706	0.26659	0.00013111	-0.33744	-0.00016595	491.79893152684156	35.959	0.59749	35.959	35.707	36.304	0					25	12	3	0	0	0	0.72896	1	1862	1862		37.159	11.585	1	525470			51480	11103	42616	42647	55791	55791					0.09166806868415733
RSPRPANL	8	Unmodified	_RSPRPANL_					0	0	0			REV__ENST00000428670.7_1_12:90049870-90102463:-|nuORF	REV__ENST00000428670.7_1_12:90049870-90102463:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	455.76556396484375	2	455.764501	909.514448	0.13409	6.1111E-05	-0.085722	-3.9069E-05	0.048363	2.2042E-05	455.7643357220204	52.974	0.69401	52.974	52.653	53.347	0					34	15	3	0	0	0	0.73205	1	4182	4182		35.618	1.4457	1	1386900	+		51481	25692	42617	42648	55792	55792					0.05607142568692325
RSPRPANL	8	Unmodified	_RSPRPANL_					0	0	0			REV__ENST00000428670.7_1_12:90049870-90102463:-|nuORF	REV__ENST00000428670.7_1_12:90049870-90102463:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	455.764501	909.514448	0.13409	6.1111E-05	-0.085722	-3.9069E-05	0.048363	2.2042E-05	455.7643357220204	52.974	0.69401	52.974	52.653	53.347	0	0	0	NaN	35.618	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1386900	+		51482	25692	42617	42648							0.05607142568692325
RSPRRRPLE	9	Unmodified	_RSPRRRPLE_					0	0	0		ENST00000453289.1_1_2:27580075-27580716:+|nuORF	ENST00000453289.1_1_2:27580075-27580716:+|nuORF	ENST00000453289.1_1_2:27580075-27580716:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.3311767578125	2	583.846887	1165.67922	1.8908	0.0011039	3.3914	0.0019801	5.2822	0.003084	584.3493000449274	113.05	0.22838	113.05	112.88	113.11	0					7	4	2	0	0	0	0.027462	1	12874	12874		39.253	5.0803	1	25778			51483	12071	42618	42649	55793	55793					0.10300954708486643
RSPSFTPLD	9	Unmodified	_RSPSFTPLD_					0	0	0			REV__ENST00000604081.1_1_12:54388685-54388883:-|nuORF	REV__ENST00000604081.1_1_12:54388685-54388883:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.95489501953125	2	510.261456	1018.50836	-0.21497	-0.00010969	2.5118	0.0012817	2.2968	0.001172	510.2623297626127	42.908	0.64738	42.908	42.496	43.143	0					28	14	3	0	0	0	0.027462	1	2783	2783		34.173	11.13	1	58725	+		51484	28056	42619	42650	55794	55794					-0.00015420453462411388
RSPSFTPLD	9	Unmodified	_RSPSFTPLD_					0	0	0			REV__ENST00000604081.1_1_12:54388685-54388883:-|nuORF	REV__ENST00000604081.1_1_12:54388685-54388883:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	510.261456	1018.50836	-0.84823	-0.00043282	8.2835	0.0042267	7.4352	0.0037939	510.26602363019333	46.357	0.5741	43.285	42.876	43.45	-3.0724	0.18863	0.0033915	NaN	34.173	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12688	+		51485	28056	42619	42650							-0.00015420453462411388
RSPSILAAKL	10	Unmodified	_RSPSILAAKL_					0	0	0		nc|ENSG00000144331|Q569K4-3|ZNF385B;nc|ENSG00000144331|Q569K4-2|ZNF385B;nc|ENSG00000144331|Q569K4|ZNF385B;ENSG00000144331|ENST00000410066|ZNF385B	nc|ENSG00000144331|Q569K4-3|ZNF385B	nc|ENSG00000144331|Q569K4-3|ZNF385B	MULTI-MSMS	OvCa9_classI_Rep2	2	528.33251953125	2	528.332216	1054.64988	3.0268	0.0015991	-3.0942	-0.0016348	-0.067462	-3.5642E-05	528.330384856165	25.512	0.98969	22.802	22.428	23.418	-2.7097					46	22	4	0	0	0	0.5675	1	267	267		45.972	3.5761	1	151950			51486	5142	42620	42651	55795	55795					0.12473997639654044
RSPSRPLI	8	Unmodified	_RSPSRPLI_					0	0	0		ENST00000535914.1_1_12:26278184-26278990:-|nuORF	ENST00000535914.1_1_12:26278184-26278990:-|nuORF	ENST00000535914.1_1_12:26278184-26278990:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	463.3006591796875	2	463.282526	924.550499	-0.97707	-0.00045266	0.77382	0.0003585	-0.20324	-9.4158E-05	463.28300212107234	84.108	0.72635	82.562	82.275	83.001	-1.5462					21	13	2	0	0	0	0.028476	1	7278	7278		49.442	0	1	38157			51487	13384	42621	42652	55796	55796					0.0852059974556596
RSPTIARL	8	Unmodified	_RSPTIARL_					0	0	0			REV__ENST00000317008.4_1_18:77401988-77439691:-|nuORF	REV__ENST00000317008.4_1_18:77401988-77439691:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	457.2823181152344	2	457.282526	912.550499	0.47425	0.00021687	-0.49128	-0.00022466	-0.017036	-7.7904E-06	457.2821592199895	58.808	2.4649	56.028	55.184	57.649	-2.7801					125	47	5	0	0	0	0.73494	1	4222	4222		34.173	2.2177	1	550990	+		51488	24409	42622	42653	55797	55797					0.09072599745559273
RSPTSLPSPG	10	Unmodified	_RSPTSLPSPG_					0	0	0			REV__ENST00000369800.5_1_5:172116953-172117430:+|nuORF	REV__ENST00000369800.5_1_5:172116953-172117430:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	499.7665100097656	2	499.766906	997.519259	-0.40616	-0.00020298	-1.4204	-0.00070987	-1.8266	-0.00091285	499.76596214404583	40.642	0.76344	40.642	40.386	41.149	0					45	16	4	0	0	0	0.40664	1	2478	2478		67.494	1.0644	1	1149000	+		51489	24949	42623	42654	55798	55798					0.02039981920813716
RSPTVPAR	8	Unmodified	_RSPTVPAR_					0	0	0		ENST00000513201.1_1_4:183245261-183245312:+|nuORF	ENST00000513201.1_1_4:183245261-183245312:+|nuORF	ENST00000513201.1_1_4:183245261-183245312:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	441.7329406738281	2	442.259051	882.503549	1.1347	0.00050183	-1.4559	-0.00064388	-0.32121	-0.00014206	442.25829877725744	45.057	0.49179	45.057	44.84	45.332	0					24	10	3	0	0	0	0.028476	1	3101	3101		17.365	0	1	517770			51490	13010	42624	42655	55799	55799					0.057597401944121884
RSQAVVDQIT	10	Unmodified	_RSQAVVDQIT_					0	0	0		nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000217128|ENST00000510461|FNIP1	nc|ENSG00000217128|Q8TF40-3|FNIP1	nc|ENSG00000217128|Q8TF40-3|FNIP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.80419921875	2	558.80402	1115.59349	1.438	0.00080356	-1.5876	-0.00088717	-0.14963	-8.3612E-05	558.8031269906488	37.905	1.3398	35.012	34.741	36.081	-2.8925					69	26	5	0	0	0	0.73938	1	1439	1439		26.063	0	1	291820			51491	9216	42625	42656	55800	55800					0.040313250123290345
RSQEQEEIF	9	Unmodified	_RSQEQEEIF_					0	0	0		tr|A0A553SQR1|A0A553SQR1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07160PE=4SV=1	tr|A0A553SQR1|A0A553SQR1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07160PE=4SV=1	tr|A0A553SQR1|A0A553SQR1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07160PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	583.8026123046875	2	583.277835	1164.54112	-1.654	-0.00096477	4.289	0.0025017	2.635	0.0015369	583.2801230337835	53.78	1.2271	50.532	49.854	51.081	-3.2474					50	23	3	0	0	0	0.027462	1	3340	3340		47.657	4.7931	1	49964			51492	34188	42626	42657	55801	55801					-0.034572581212842124
RSQGLKGLL	9	Unmodified	_RSQGLKGLL_					0	0	0		ENST00000592828.5_1_19:11688076-11689520:-|nuORF	ENST00000592828.5_1_19:11688076-11689520:-|nuORF	ENST00000592828.5_1_19:11688076-11689520:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.3050537109375	2	486.303458	970.592364	0.016353	7.9527E-06	3.7435	0.0018205	3.7599	0.0018284	486.3051966587704	121.94	2.2082	120.59	120.11	122.32	-1.3479					102	43	4	0	0	0	0.61365	1	11534	11534		30.318	1.1682	1	873390			51493	14140	42627	42658	55802	55802					0.10589155434104214
RSQLRQVE	8	Unmodified	_RSQLRQVE_					0	0	0			REV__ENSG00000172889|ENST00000308874|EGFL7	REV__ENSG00000172889|ENST00000308874|EGFL7	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.80853271484375	2	508.285797	1014.55704	-1.2743	-0.00064771	-1.1482	-0.00058361	-2.4225	-0.0012313	508.7853271011823	60.868	1.1086	58.098	57.448	58.557	-2.7702					21	15	2	0	0	0	0.028476	1	4487	4487		35.618	0	1	25941	+		51494	21734	42628	42659	55803	55803					0.050344929062816846
RSQLSFLPTE	10	Unmodified	_RSQLSFLPTE_					0	0	0		nc|ENSG00000140577|Q6UUV7-3|CRTC3;ENSG00000140577|ENST00000268184|CRTC3	nc|ENSG00000140577|Q6UUV7-3|CRTC3	nc|ENSG00000140577|Q6UUV7-3|CRTC3	MULTI-SECPEP	OvCa99_classI_Rep5	1	590.2568359375	2	589.31422	1176.61389	3.2332	0.0019054	3.4141	0.002012	6.6474	0.0039174	589.3178813422328	97.7	0.9443	97.7	96.923	97.867	0					28	21	3	0	0	0	0.026956	1	10736	10736		19.997	0	1	118260			51495	4863	42629	42660	55804	55804					0.032644956721242124
RSQNEYNTL	9	Unmodified	_RSQNEYNTL_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-MSMS	OvCa9_classI_Rep3	3	562.7701416015625	2	562.770177	1123.5258	1.1387	0.00064084	-1.4607	-0.00082204	-0.32196	-0.00018119	562.7691698449738	123.61	0.92767	122.57	122.31	123.24	-1.0377					31	17	2	0	0	0	0.2784	1	9541	9541		65.465	19.513	1	76041	+		51496	20262	42630	42661	55805	55805					-0.03102124918473237
RSQNEYNTL	9	Unmodified	_RSQNEYNTL_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-MATCH	OvCa9_classI_Rep2	2		2	562.770177	1123.5258	0.32171	0.00018105	-0.57814	-0.00032536	-0.25644	-0.00014432	562.7697721171015	122.95	0.83843	122.73	122.46	123.3	-0.21803	0.1163	0.00051454	NaN	65.465	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59933	+		51497	20262	42630	42661							-0.03102124918473237
RSQNEYNTL	9	Unmodified	_RSQNEYNTL_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	562.770177	1123.5258	1.1387	0.00064084	-1.4607	-0.00082204	-0.32196	-0.00018119	562.7691698449738	123.61	0.92767	122.57	122.31	123.24	-1.0377	-0.044154	-0.00047881	NaN	65.465	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76041	+		51498	20262	42630	42661							-0.03102124918473237
RSQPVPRSV	9	Unmodified	_RSQPVPRSV_					0	0	0		chr17:43013662-43014108|132|11.41|0.46|4.63|+|0|IFI35,IFI35|1;ENSG00000068079|ENST00000415816|IFI35;nc|ENSG00000068079|P80217-2|IFI35	chr17:43013662-43014108|132|11.41|0.46|4.63|+|0|IFI35,IFI35|1	chr17:43013662-43014108|132|11.41|0.46|4.63|+|0|IFI35,IFI35|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.2958374023438	2	513.296165	1024.57778	-1.0624	-0.00054535	0.86966	0.00044639	-0.19278	-9.8954E-05	513.2960537048449	41.497	1.5965	38.516	38.231	39.828	-2.9804					63	30	3	0	0	0	0.2077	1	1861	1861		75.043	0.78827	1	585930			51499	384	42631	42662	55806	55806					0.06647083285952249
RSQPVPRSV	9	Unmodified	_RSQPVPRSV_					0	0	0		chr17:43013662-43014108|132|11.41|0.46|4.63|+|0|IFI35,IFI35|1;ENSG00000068079|ENST00000415816|IFI35;nc|ENSG00000068079|P80217-2|IFI35	chr17:43013662-43014108|132|11.41|0.46|4.63|+|0|IFI35,IFI35|1	chr17:43013662-43014108|132|11.41|0.46|4.63|+|0|IFI35,IFI35|1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	513.296165	1024.57778	0.63155	0.00032417	-1.0258	-0.00052653	-0.39422	-0.00020235	513.2955037360213	41.139	0.9849	38.429	38.192	39.177	-2.7097	-0.043522	-0.00031153	NaN	75.043	29	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125400			51500	384	42631	42662							0.06647083285952249
RSQRPRVP	8	Unmodified	_RSQRPRVP_					0	0	0			REV__chr8:143018247-143020883|199|49.11|0.42|6.85|+|0|LY6E,LY6E|1	REV__chr8:143018247-143020883|199|49.11|0.42|6.85|+|0|LY6E,LY6E|1	MULTI-MSMS	OvCa99_classI_Rep5	1	498.29644775390625	2	498.296499	994.578445	-0.15673	-7.8097E-05	0.1904	9.4876E-05	0.033672	1.6779E-05	498.29643614681646	22.122	0.28293	22.122	22.017	22.3	0					13	7	3	0	0	0	0.74971	1	180	180		26.796	0	1	48940	+		51501	16108	42632	42663	55807	55807					0.0809392272566356
RSQRTLLS	8	Unmodified	_RSQRTLLS_					0	0	0			REV__ENST00000319863.12_1_11:770415-770625:-|nuORF	REV__ENST00000319863.12_1_11:770415-770625:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	480.7825622558594	2	480.78289	959.551228	-1.0055	-0.00048344	0.35437	0.00017038	-0.65115	-0.00031306	480.7829878496556	48.434	1.9358	45.674	45.23	47.166	-2.7603					133	38	6	0	0	0	0.66992	1	3009	3009		49.442	5.3247	1	1103900	+		51502	24437	42633	42664	55808	55808					0.06983394394637799
RSQSFKKLL	9	Unmodified	_RSQSFKKLL_					0	0	0		tr|A0A553SIS2|A0A553SIS2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15390PE=4SV=1	tr|A0A553SIS2|A0A553SIS2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15390PE=4SV=1	tr|A0A553SIS2|A0A553SIS2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15390PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.3238525390625	2	553.837665	1105.66078	-1.0374	-0.00057455	1.4657	0.00081177	0.42833	0.00023722	553.8379514868731	50.717	0.51466	47.543	47.256	47.771	-3.1734					16	9	2	0	0	0	0.027462	1	2947	2947		37.812	24.852	1	42140			51503	33419	42634	42665	55809	55809					0.11217400013947554
RSQSPVRSM	9	Unmodified	_RSQSPVRSM_					0	0	0		ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.8082885742188	2	524.271832	1046.52911	-0.37035	-0.00019416	4.2606	0.0022337	3.8902	0.0020395	524.273688772258	105.17	0.65962	105.17	104.91	105.57	0					23	14	3	0	0	0	0.027462	1	11831	11831		35.152	24.887	1	435850			51504	1091	42635	42666	55810	55810					0.007708466545409465
RSQSRRPVL	9	Unmodified	_RSQSRRPVL_					0	0	0			REV__ENST00000264716.8_1_2:28616344-28616383:+|nuORF	REV__ENST00000264716.8_1_2:28616344-28616383:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	549.8265380859375	2	549.828163	1097.64177	0.51244	0.00028176	1.3731	0.00075498	1.8856	0.0010367	549.8288345990625	109.7	1.1379	109.53	109.31	110.45	-0.17237					49	22	3	0	0	0	0.38529	1	10314	10314		53.351	0.41475	1	73674	+		51505	24023	42636	42667	55811	55811					0.09685863442905429
RSQSRRPVL	9	Unmodified	_RSQSRRPVL_					0	0	0			REV__ENST00000264716.8_1_2:28616344-28616383:+|nuORF	REV__ENST00000264716.8_1_2:28616344-28616383:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	549.828163	1097.64177	0.51244	0.00028176	1.3731	0.00075498	1.8856	0.0010367	549.8288345990625	109.7	1.1379	109.53	109.31	110.45	-0.17237	-0.02034	-0.00021832	NaN	53.351	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73674	+		51506	24023	42636	42667							0.09685863442905429
RSQSRRPVL	9	Unmodified	_RSQSRRPVL_					0	0	0			REV__ENST00000264716.8_1_2:28616344-28616383:+|nuORF	REV__ENST00000264716.8_1_2:28616344-28616383:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	549.828163	1097.64177	0.26305	0.00014463	1.6512	0.0009079	1.9143	0.0010525	549.829014406967	110.72	1.5623	109.58	109.24	110.8	-1.1444	0.024038	8.7517E-05	NaN	53.351	58	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58831	+		51507	24023	42636	42667							0.09685863442905429
RSQSRRPVL	9	Unmodified	_RSQSRRPVL_					0	0	0			REV__ENST00000264716.8_1_2:28616344-28616383:+|nuORF	REV__ENST00000264716.8_1_2:28616344-28616383:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	549.828163	1097.64177	0.40935	0.00022507	1.481	0.00081432	1.8904	0.0010394	549.8289124123019	111.15	1.211	109.55	109.28	110.49	-1.6011	-0.0036981	-9.9638E-05	NaN	53.351	41	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84157	+		51508	24023	42636	42667							0.09685863442905429
RSQTNCCLP	9	Unmodified	_RSQTNCCLP_					0	0	0		ENSG00000180730|ENST00000319420|SHISA2	ENSG00000180730|ENST00000319420|SHISA2	ENSG00000180730|ENST00000319420|SHISA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.25787353515625	2	511.231319	1020.44808	-0.1831	-9.3608E-05	-2.224	-0.001137	-2.4071	-0.0012306	511.229915193596	56.319	0.16195	56.319	56.178	56.34	0					5	3	2	0	0	0	0.027462	1	4660	4660		26.693	0	1	378580			51509	7881	42637	42668	55812	55812					-0.06132177379856785
RSRAAFSH	8	Unmodified	_RSRAAFSH_					0	0	0		nc|ENSG00000167034|Q99801-3|NKX3-1;nc|ENSG00000167034|Q99801-4|NKX3-1;nc|ENSG00000167034|Q99801-2|NKX3-1;nc|ENSG00000167034|Q99801-5|NKX3-1;ENSG00000167034|ENST00000380871|NKX3-1;ENSG00000109705|ENST00000382438|NKX3-2	nc|ENSG00000167034|Q99801-3|NKX3-1	nc|ENSG00000167034|Q99801-3|NKX3-1	MULTI-SECPEP	OvCa99_classI_Rep5	1	466.25970458984375	2	466.246475	930.478397	-0.39563	-0.00018446	4.1804	0.0019491	3.7847	0.0017646	466.2482783749442	54.769	0.43229	54.769	54.632	55.064	0					14	9	2	0	0	0	0.028476	1	4434	4434		30.504	0	1	186800			51510	2729	42638	42669	55813	55813					0.010376853918501183
RSRALLNIN	9	Unmodified	_RSRALLNIN_					0	0	0		ENST00000561573.1_1_15:90806992-90815017:+|nuORF;ENSG00000213471|ENST00000641754|TTLL13;nc|ENSG00000213471|A6NNM8|TTLL13	ENST00000561573.1_1_15:90806992-90815017:+|nuORF	ENST00000561573.1_1_15:90806992-90815017:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.3428344726562	2	528.817264	1055.61998	0.31131	0.00016463	2.363	0.0012496	2.6743	0.0014142	528.8185175860126	139.99	0.54904	138.49	138.31	138.86	-1.4952					12	10	2	0	0	0	0.027462	1	13663	13663		35.618	0	1	6312			51511	13758	42639	42670	55814	55814					0.09439058694329105
RSRAQKRREAL	11	Unmodified	_RSRAQKRREAL_					0	0	0		ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	ENSG00000137877|ENST00000320955|SPTBN5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.7679748535156	3	457.607764	1369.80146	0.7199	0.00032943	0.96051	0.00043954	1.6804	0.00076897	457.6081554744706	37.813	0.44935	34.92	34.641	35.09	-2.8925					15	8	2	0	0	0	0.026145	1	1411	1411		23.378	14.579	1	17091			51512	4634	42640	42671	55815	55815					0.13135371720090916
RSRDKRSP	8	Unmodified	_RSRDKRSP_					0	0	0			REV__ENST00000588933.5_1_19:9529917-9529956:-|nuORF	REV__ENST00000588933.5_1_19:9529917-9529956:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.79376220703125	2	501.283589	1000.55262	-0.12257	-6.1443E-05	-2.1219	-0.0010637	-2.2445	-0.0011251	501.283638580676	86.924	0.83987	84.297	83.908	84.748	-2.6269					18	16	2	0	0	0	0.028476	1	7324	7324		18.324	0	1	21346	+		51513	27898	42641	42672	55816	55816					0.052370284833727965
RSRDPKAELG	10	Unmodified	_RSRDPKAELG_					0	0	0			REV__nc|ENSG00000135111|O15119-3|TBX3	REV__nc|ENSG00000135111|O15119-3|TBX3	MULTI-MSMS	OvCa9_classI_Rep2	2	564.8095092773438	2	564.809636	1127.60472	-1.9303	-0.0010902	1.8993	0.0010728	-0.030941	-1.7476E-05	564.8106176349336	37.613	0.83681	34.903	34.682	35.519	-2.7097					41	16	4	0	0	0	0.47142	1	1704	1704		58.23	5.2932	1	94842	+		51514	19260	42642	42673	55817	55817					0.04602147106470511
RSREPRPRV	9	Unmodified	_RSREPRPRV_					0	0	0		ENST00000263904.4_1_2:153032177-153032426:-|nuORF	ENST00000263904.4_1_2:153032177-153032426:-|nuORF	ENST00000263904.4_1_2:153032177-153032426:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.2985229492188	2	576.839062	1151.66357	-1.04	-0.00059989	2.5336	0.0014615	1.4936	0.00086157	576.8405137933769	28.415	0.44837	28.415	28.24	28.688	0					17	8	3	0	0	0	0.027462	1	914	914		25.574	0	1	148030			51515	9919	42643	42674	55818	55818					0.09380668191465702
RSRERRRRNR	10	Unmodified	_RSRERRRRNR_					0	0	0			REV__ENST00000332995.11_1_6:13278505-13278550:+|nuORF	REV__ENST00000332995.11_1_6:13278505-13278550:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	481.282470703125	3	481.285907	1440.83589	-6.6786	-0.0032143	1.7478	0.00084119	-4.9308	-0.0023731	481.2868612614486	161.01	3.7232	159.65	158.49	162.21	-1.3523					206	77	3	0	0	0	0.7855	2	13908	13908;14097		20.837	0.80668	1	127690	+		51516	24551	42644	42675	55819;55820	55819					0.13310632651564447
RSRESNRQLH	10	Unmodified	_RSRESNRQLH_					0	0	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MULTI-MSMS	OvCa99_classI_Rep5	1	641.8426513671875	2	641.839791	1281.66503	0.99244	0.00063699	1.362	0.00087417	2.3544	0.0015112	641.8408179324483	159.1	1.0595	159.1	158.46	159.52	0					55	21	4	0	0	0	0.69073	1	18633	18633		31.53	2.3803	1	287220	+		51517	19327	42645	42676	55821	55821					0.035462574895746
RSRESNRQLH	10	Unmodified	_RSRESNRQLH_					0	0	0			REV__ENSG00000135837|ENST00000367607|CEP350	REV__ENSG00000135837|ENST00000367607|CEP350	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	641.839791	1281.66503	0.99244	0.00063699	1.362	0.00087417	2.3544	0.0015112	641.8408179324483	159.1	1.0595	159.1	158.46	159.52	0	0	0	NaN	31.53	55	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	287220	+		51518	19327	42645	42676							0.035462574895746
RSRFLESQVTQ	11	Unmodified	_RSRFLESQVTQ_					0	0	0			REV__ENSG00000170043|ENST00000303731|TRAPPC1	REV__ENSG00000170043|ENST00000303731|TRAPPC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.7626037597656	3	450.908997	1349.70516	-0.028782	-1.2978E-05	1.6799	0.00075749	1.6511	0.00074452	451.24414801869847	58.953	0.58954	58.953	58.53	59.12	0					16	14	2	0	0	0	0.026101	1	5023	5023		7.6794	0	1	1181500	+		51519	21510	42646	42677	55822	55822					0.04429759369486419
RSRFTTLLRKL	11	Unmodified	_RSRFTTLLRKL_					0	0	0		nc|ENSG00000157833|Q75VX8-3|GAREM2;nc|ENSG00000157833|Q75VX8-2|GAREM2;ENSG00000157833|ENST00000401533|GAREM2	nc|ENSG00000157833|Q75VX8-3|GAREM2	nc|ENSG00000157833|Q75VX8-3|GAREM2	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.2598876953125	3	464.292894	1389.85685	-0.013607	-6.3177E-06	2.1138	0.00098143	2.1002	0.00097511	464.2935372785336	78.703	0.94818	76.964	76.565	77.513	-1.7398					32	18	3	0	0	0	0.02625	1	6564	6564		18.531	8.8849	1	16941			51520	5914	42647	42678	55823	55823					0.17751785187829228
RSRGGERGAGL	11	Unmodified	_RSRGGERGAGL_					0	0	0			REV__ENST00000584655.5_1_17:33353525-33416206:-|nuORF	REV__ENST00000584655.5_1_17:33353525-33416206:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	558.3330688476562	2	558.305052	1114.59555	1.0248	0.00057216	1.4694	0.00082039	2.4942	0.0013925	558.3057169017402	90.338	0.76175	87.763	87.45	88.212	-2.575					19	14	2	0	0	0	0.025554	1	7801	7801		48.602	2.6293	1	30125	+		51521	25920	42648	42679	55824	55824					0.04283798540814132
RSRGGVFRQ	9	Unmodified	_RSRGGVFRQ_					0	0	0		nc|ENSG00000088387|Q9BZ29-3|DOCK9;nc|ENSG00000088387|Q9BZ29-5|DOCK9;nc|ENSG00000088387|Q9BZ29|DOCK9;nc|ENSG00000088387|Q9BZ29-4|DOCK9	nc|ENSG00000088387|Q9BZ29-3|DOCK9	nc|ENSG00000088387|Q9BZ29-3|DOCK9	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8004150390625	2	531.799406	1061.58426	-2.0056	-0.0010666	4.4734	0.0023789	2.4678	0.0013124	531.8015751099314	118.31	1.2627	116.97	116.47	117.73	-1.3444					52	23	4	0	0	0	0.56189	1	11097	11097		36.447	0.82846	1	303100			51522	14911	42649	42680	55825	55825					0.05593021237314133
RSRGLGLSPLS	11	Unmodified	_RSRGLGLSPLS_					0	0	0			REV__ENSG00000149527|ENST00000378486|PLCH2	REV__ENSG00000149527|ENST00000378486|PLCH2	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.8079223632812	2	571.835654	1141.65676	2.4788	0.0014175	-3.3717	-0.0019281	-0.89292	-0.00051061	571.8336918203039	75.313	0.63576	75.313	75.087	75.723	0					31	15	3	0	0	0	0.025701	1	7499	7499		36.447	9.7538	1	1102800	+		51523	20169	42650	42681	55826	55826					0.09159310520249164
RSRGRFLTNP	10	Unmodified	_RSRGRFLTNP_					0	0	0		ENST00000359842.9_1_1:165414228-165414372:-|nuORF	ENST00000359842.9_1_1:165414228-165414372:-|nuORF	ENST00000359842.9_1_1:165414228-165414372:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	601.3412475585938	2	602.338895	1202.66324	0.48663	0.00029312	-2.396	-0.0014432	-1.9093	-0.0011501	602.3374491565668	73.858	0.3083	73.858	73.636	73.945	0					14	7	2	0	0	0	0.027117	1	7266	7266		11.097	0	1	1204200			51524	10756	42651	42682	55827	55827					0.07001248471601684
RSRHILAY	8	Unmodified	_RSRHILAY_					0	0	0		ROS1|p.T1963Dfs*18|1|0.07|ENSG00000047936|chr6:117319921-117319922|-/GGCATGTTTGAAGAAAAATGATTGCCTGATAGGTC|frameshift_variant;ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1	ROS1|p.T1963Dfs*18|1|0.07|ENSG00000047936|chr6:117319921-117319922|-/GGCATGTTTGAAGAAAAATGATTGCCTGATAGGTC|frameshift_variant	ROS1|p.T1963Dfs*18|1|0.07|ENSG00000047936|chr6:117319921-117319922|-/GGCATGTTTGAAGAAAAATGATTGCCTGATAGGTC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.8022766113281	2	508.293425	1014.5723	-0.72826	-0.00037017	-2.7619	-0.0014038	-3.4901	-0.001774	508.2929498695574	74.302	0.52516	72.33	72.167	72.692	-1.9711					9	9	2	0	0	0	0.028476	1	6112	6112		51.335	0	1	8331.6			51525	1153	42652	42683	55828	55828					0.06559404494123555
RSRKARPD	8	Unmodified	_RSRKARPD_					0	0	0		ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000141858|Q6SPF0|SAMD1	ENSG00000141858|ENST00000533683|SAMD1	ENSG00000141858|ENST00000533683|SAMD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.2601623535156	2	493.286131	984.55771	-0.70381	-0.00034718	1.5668	0.00077286	0.86296	0.00042568	493.28778913363215	41.515	0.78017	38.535	38.231	39.011	-2.9804					25	14	3	0	0	0	0.028476	1	1851	1851		18.324	0	1	40603			51526	4942	42653	42684	55829	55829					0.06481332345992996
RSRKERPT	8	Unmodified	_RSRKERPT_					0	0	0		ENSG00000138834|ENST00000610761|MAPK8IP3	ENSG00000138834|ENST00000610761|MAPK8IP3	ENSG00000138834|ENST00000610761|MAPK8IP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2811279296875	2	515.299239	1028.58392	0.35186	0.00018131	-2.3366	-0.001204	-1.9847	-0.0010227	515.2977512949287	72.232	0.55917	72.232	72.086	72.645	0					17	13	2	0	0	0	0.028476	1	7081	7081		16.473	0	1	1034700			51527	4737	42654	42685	55830	55830					0.07077601517471521
RSRKHDRR	8	Unmodified	_RSRKHDRR_					0	0	0			REV__ENST00000540626.5_1_11:71714133-71714271:-|nuORF	REV__ENST00000540626.5_1_11:71714133-71714271:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	556.3291015625	2	555.821204	1109.62786	4.315	0.0023984	-2.2311	-0.0012401	2.0839	0.0011583	555.8198103416565	25.114	1.0176	22.405	22.261	23.279	-2.7097					54	22	4	0	0	0	0.74209	1	289	289		12.959	0	1	302060	+		51528	27352	42655	42686	55831	55831					0.07742630734469458
RSRKKHLI	8	Unmodified	_RSRKKHLI_					0	0	0		NFS1|p.V310Gfs*20|1|0.06|ENSG00000244005|chr20:35675064-35675064|A/-|frameshift_variant;nc|ENSG00000244005|Q9Y697-2|NFS1;ENSG00000244005|ENST00000374092|NFS1	NFS1|p.V310Gfs*20|1|0.06|ENSG00000244005|chr20:35675064-35675064|A/-|frameshift_variant	NFS1|p.V310Gfs*20|1|0.06|ENSG00000244005|chr20:35675064-35675064|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.6851196289062	2	519.338167	1036.66178	-0.2296	-0.00011924	-0.13005	-6.7541E-05	-0.35965	-0.00018678	519.3379985643085	57.157	1.5713	53.812	53.527	55.098	-3.3449					57	30	3	0	0	0	0.028476	1	3827	3827		55.504	9.5523	1	73208			51529	9389	42656	42687	55832	55832					0.144916591735182
RSRKKHLI	8	Unmodified	_RSRKKHLI_					0	0	0		NFS1|p.V310Gfs*20|1|0.06|ENSG00000244005|chr20:35675064-35675064|A/-|frameshift_variant;nc|ENSG00000244005|Q9Y697-2|NFS1;ENSG00000244005|ENST00000374092|NFS1	NFS1|p.V310Gfs*20|1|0.06|ENSG00000244005|chr20:35675064-35675064|A/-|frameshift_variant	NFS1|p.V310Gfs*20|1|0.06|ENSG00000244005|chr20:35675064-35675064|A/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	519.338167	1036.66178	-0.57689	-0.0002996	0.28727	0.00014919	-0.28962	-0.00015041	519.3381890646612	56.351	1.0405	53.547	53.126	54.166	-2.804	-0.13208	0.00012757	NaN	55.504	47	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77485			51530	9389	42656	42687							0.144916591735182
RSRKRGGGP	9	Unmodified	_RSRKRGGGP_					0	0	0			REV__ENST00000433510.2_1_17:46724166-46724286:-|nuORF	REV__ENST00000433510.2_1_17:46724166-46724286:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	485.7879943847656	2	485.786299	969.558044	-1.1407	-0.00055413	3.5807	0.0017395	2.44	0.0011853	485.7879140600141	87.774	2.3065	85.597	84.985	87.291	-2.1768					97	45	4	0	0	0	0.46356	1	5322	5322		45.972	1.5951	1	1238400	+		51531	25750	42657	42688	55833	55833					0.07204752065865705
RSRLAMRPLS	10	Unmodified	_RSRLAMRPLS_					0	0	0		ENSG00000134278|ENST00000409402|SPIRE1	ENSG00000134278|ENST00000409402|SPIRE1	ENSG00000134278|ENST00000409402|SPIRE1	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.8159790039062	2	593.845499	1185.67644	1.3317	0.00079082	0.97749	0.00058048	2.3092	0.0013713	594.3472151594362	79.098	0.20325	79.098	79.037	79.24	0					6	4	2	0	0	0	0.026867	1	8062	8062		28.081	0	1	160080			51532	4276	42658	42689	55834	55834					0.09103363259328034
RSRLLAASS	9	Unmodified	_RSRLLAASS_					0	0	0			REV__ENST00000352536.7_1_6:117586889-117589562:+|nuORF	REV__ENST00000352536.7_1_6:117586889-117589562:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	480.7822570800781	2	480.78289	959.551228	-1.0055	-0.00048344	0.35437	0.00017038	-0.65115	-0.00031306	480.7829878496556	48.434	1.9358	45.674	45.23	47.166	-2.7603					133	38	6	0	0	0	0.48047	1	3022	3022		44.377	1.981	1	1103900	+		51533	24726	42659	42690	55835	55835					0.06983394394615061
RSRLRIEE	8	Unmodified	_RSRLRIEE_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.2908935546875	2	529.806897	1057.59924	-1.0708	-0.00056733	-1.0203	-0.00054058	-2.0912	-0.0011079	529.8073618716897	36.71	0.26505	36.71	36.575	36.84	0					6	5	2	0	0	0	0.028476	1	1960	1960		15.642	0.77694	1	23960			51534	7740	42660	42691	55836	55836					0.07274468314653859
RSRLSCDL	8	Unmodified	_RSRLSCDL_					0	0	0		ENST00000340149.6_1_11:77926678-77927026:-|nuORF	ENST00000340149.6_1_11:77926678-77927026:-|nuORF	ENST00000340149.6_1_11:77926678-77927026:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.5788879394531	2	475.247826	948.481099	0.25166	0.0001196	3.2978	0.0015673	3.5495	0.0016869	475.24930189066237	79.304	0.90385	76.553	76.227	77.13	-2.7514					32	18	2	0	0	0	0.028476	1	6422	6422		37.159	0	1	226960			51535	10557	42661	42692	55837	55837					0.0047977273447941116
RSRLVSTTP	9	Unmodified	_RSRLVSTTP_					0	0	0			REV__ENST00000367311.4_1_1:201435078-201437729:-|nuORF	REV__ENST00000367311.4_1_1:201435078-201437729:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.3012390136719	2	508.795998	1015.57744	-0.50139	-0.00025511	4.1991	0.0021365	3.6977	0.0018814	508.79812440883717	38.172	0.36536	38.172	37.983	38.348	0					17	7	4	0	0	0	0.027462	1	2146	2146		32.812	4.9302	1	158540	+		51536	24895	42662	42693	55838	55838					0.07027663566088904
RSRNKPSPWSR	11	Unmodified	_RSRNKPSPWSR_					0	0	0			REV__PRRC2A|p.G1884Rfs*57|1|0.07|ENSG00000204469|chr6:31636227-31636228|-/C|frameshift_variant;REV__nc|ENSG00000204469|P48634-2|PRRC2A	REV__nc|ENSG00000204469|P48634-2|PRRC2A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.7722473144531	3	457.584848	1369.73271	-0.90939	-0.00041612	-3.6091	-0.0016514	-4.5184	-0.0020676	457.5832229624272	41.935	1.0259	38.955	38.645	39.67	-2.9804					29	19	2	0	0	0	0.025904	1	1905	1905		30.139	7.5776	1	32995	+		51537	23157;29102	42663	42694	55839	55839					0.06263707420362152
RSRNLAASS	9	Unmodified	_RSRNLAASS_					0	0	0			REV__nc|ENSG00000151065|Q8IZD4-2|DCP1B	REV__nc|ENSG00000151065|Q8IZD4-2|DCP1B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.78424072265625	2	481.262322	960.510091	-0.71572	-0.00034445	2.7682	0.0013322	2.0525	0.00098779	481.2637209253197	48.533	0.36024	45.425	45.244	45.604	-3.1077					10	6	2	0	0	0	0.027418	1	2690	2690		62.107	0	1	39274	+		51538	20215	42664	42695	55840	55840					0.02825633355143964
RSRQRATDEL	10	Unmodified	_RSRQRATDEL_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11;DNAH11|p.L1769Yfs*9|1|0.08|ENSG00000105877|chr7:21659007-21659008|-/TATGCAAGAAACGGTGCGTCATT|frameshift_variant	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MULTI-SECPEP	OvCa99_classI_Rep5	1	615.7921752929688	2	616.328724	1230.6429	0.34164	0.00021056	1.7953	0.0011065	2.1369	0.001317	616.329852643991	63.282	1.1089	63.282	62.902	64.011	0					54	27	3	0	0	0	0.026782	1	5713	5713		37.812	6.2817	1	1242500			51539	2511	42665	42696	55841	55841					0.03680033021169038
RSRRCLRL	8	Unmodified	_RSRRCLRL_					0	0	0		ENSG00000185761|ENST00000330475|ADAMTSL5;nc|ENSG00000185761|Q6ZMM2|ADAMTSL5;nc|ENSG00000185761|Q6ZMM2-2|ADAMTSL5	ENSG00000185761|ENST00000330475|ADAMTSL5	ENSG00000185761|ENST00000330475|ADAMTSL5	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.290771484375	2	530.319451	1058.62435	-0.7654	-0.00040591	-0.38212	-0.00020265	-1.1475	-0.00060855	530.3189259724943	36.42	0.41313	36.42	36.119	36.532	0					14	8	2	0	0	0	0.028476	1	1889	1889		32.812	0	1	47005			51540	8280	42666	42697	55842	55842					0.09738244636241689
RSRRKTGT	8	Unmodified	_RSRRKTGT_					0	0	0		ENSG00000161800|ENST00000312377|RACGAP1	ENSG00000161800|ENST00000312377|RACGAP1	ENSG00000161800|ENST00000312377|RACGAP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	480.7720947265625	2	481.286131	960.55771	-0.62467	-0.00030064	1.879	0.00090435	1.2544	0.0006037	481.28693038626835	32.265	0.64352	29.555	29.431	30.075	-2.7097					19	12	2	0	0	0	0.028476	1	1086	1086		26.796	0	1	25599			51541	6139	42667	42698	55843	55843					0.07585332346013729
RSRRLKQPKRL	11	Unmodified	_RSRRLKQPKRL_					0	0	0		ENST00000609398.5_1_17:1616063-1617149:-|nuORF	ENST00000609398.5_1_17:1616063-1617149:-|nuORF	ENST00000609398.5_1_17:1616063-1617149:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.3029479980469	3	479.979421	1436.91643	-0.84536	-0.00040576	0.0864	4.147E-05	-0.75896	-0.00036429	479.979407669166	27.271	0.39856	27.271	27.092	27.491	0					17	7	4	0	0	0	0.026365	1	811	811		20.315	4.3944	1	96920			51542	14302	42668	42699	55844	55844					0.21545100921866833
RSRRRAPISH	10	Unmodified	_RSRRRAPISH_					0	0	0		ENST00000494730.2_1_22:25573299-25581087:+|nuORF;nc|ENSG00000197077|Q9BY89-2|KIAA1671;ENSG00000197077|ENST00000358431|KIAA1671	ENST00000494730.2_1_22:25573299-25581087:+|nuORF	ENST00000494730.2_1_22:25573299-25581087:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.8996887207031	3	412.577916	1234.71192	0.52592	0.00021698	2.7928	0.0011522	3.3187	0.0013692	412.5799948618063	41.381	0.22504	41.381	41.195	41.42	0					8	4	2	0	0	0	0.027118	1	2566	2566		18.531	0	1	36945			51543	8674	42669	42700	55845	55845					0.1039516183136584
RSRRSRQL	8	Unmodified	_RSRRSRQL_					0	0	0			REV__ENST00000599172.2_1_9:131938181-131938688:+|nuORF	REV__ENST00000599172.2_1_9:131938181-131938688:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	529.8189086914062	2	529.81813	1057.62171	-0.39512	-0.00020934	2.9661	0.0015715	2.5709	0.0013621	529.8193709329315	48.84	0.92146	48.84	48.585	49.507	0					29	20	3	0	0	0	0.58347	1	3606	3606		67.494	1.0644	1	1153400	+		51544	28019	42670	42701	55846	55846					0.09520112502946176
RSRRVEQRIE	10	Unmodified	_RSRRVEQRIE_					0	0	0		MER51E_dup213|chr19:56234920-56237271:+|1.2535105915377431|0.3253014843551329|1.95|426.0|80|2|anti-sense	MER51E_dup213|chr19:56234920-56237271:+|1.2535105915377431|0.3253014843551329|1.95|426.0|80|2|anti-sense	MER51E_dup213|chr19:56234920-56237271:+|1.2535105915377431|0.3253014843551329|1.95|426.0|80|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	444.2583923339844	3	443.588369	1327.74328	1.0042	0.00044543	1.2842	0.00056964	2.2883	0.0010151	443.5892899600702	57.315	0.49586	54.523	54.178	54.674	-2.7921					11	9	2	0	0	0	0.027138	1	4057	4057		23.378	0.79825	1	9834.3			51545	14834	42671	42702	55847	55847					0.09251690074779617
RSRSCRSYG	9	Unmodified	_RSRSCRSYG_					0	0	0		ENSG00000114857|ENST00000232978|NKTR	ENSG00000114857|ENST00000232978|NKTR	ENSG00000114857|ENST00000232978|NKTR	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3421020507812	2	536.259256	1070.50396	-0.6357	-0.0003409	-0.59723	-0.00032027	-1.2329	-0.00066117	536.2588409109658	39.655	0.38048	39.655	39.376	39.756	0					14	8	3	0	0	0	0.027462	1	2344	2344		29.15	6.1071	1	318790			51546	3046	42672	42703	55848	55848					-0.028472081480458655
RSRSHSESHK	10	Unmodified	_RSRSHSESHK_					0	0	0			REV__ENSG00000164548|ENST00000297071|TRA2A	REV__ENSG00000164548|ENST00000297071|TRA2A	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.21759033203125	3	404.206037	1209.59628	1.3262	0.00053604	-2.2097	-0.00089317	-0.88354	-0.00035713	404.205101587372	46.699	0.26534	46.699	46.587	46.852	0					7	5	2	0	0	0	0.026734	1	3311	3311		23.378	2.3457	1	85897	+		51547	20997	42673	42704	55849	55849					-0.0001340681014880829
RSRSLPAFPT	10	Unmodified	_RSRSLPAFPT_					0	0	0		ENSG00000143669|ENST00000389793|LYST	ENSG00000143669|ENST00000389793|LYST	ENSG00000143669|ENST00000389793|LYST	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.2577514648438	2	566.317097	1130.61964	2.1319	0.0012073	2.7158	0.001538	4.8476	0.0027453	566.31857747577	77.619	0.83356	77.619	77.501	78.335	0					31	19	2	0	0	0	0.026956	1	7820	7820		19.997	0	1	1138600			51548	5084	42674	42705	55850	55850					0.05955638974455724
RSRSRERRRRE	11	Unmodified	_RSRSRERRRRE_					0	0	0			REV__ENSG00000124380|ENST00000244227|SNRNP27	REV__ENSG00000124380|ENST00000244227|SNRNP27	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2402954101562	3	515.296471	1542.86758	-1.1407	-0.00058779	-3.0172	-0.0015547	-4.1578	-0.0021425	515.6302447415908	36.577	0.3545	36.577	36.397	36.751	0					9	7	2	0	0	0	0.026259	1	1921	1921		25.892	14.437	1	37140	+		51549	18683	42675	42706	55851	55851					0.11786580614807463
RSRTRGRRERR	11	Unmodified	_RSRTRGRRERR_					0	0	0		ENST00000536792.5_1_13:26828364-26828673:+|nuORF	ENST00000536792.5_1_13:26828364-26828673:+|nuORF	ENST00000536792.5_1_13:26828364-26828673:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	496.29339599609375	3	495.961312	1484.86211	-6.9468	-0.0034453	1.7202	0.00085314	-5.2266	-0.0025922	495.96210445138047	163.05	2.2058	161.66	160.17	162.38	-1.3926					163	48	5	0	0	0	0.72472	1	14287	14287		19.263	10.051	1	227040			51550	13395	42676	42707	55852	55852					0.13906901823020235
RSRTRLRLPV	10	Unmodified	_RSRTRLRLPV_					0	0	0			REV__ENST00000417456.1_1_1:35441975-35442986:-|nuORF	REV__ENST00000417456.1_1_1:35441975-35442986:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.24969482421875	3	418.60195	1252.78402	0.51598	0.00021599	1.1965	0.00050087	1.7125	0.00071686	418.60246147091163	32.965	0.29045	32.965	32.748	33.039	0					7	5	2	0	0	0	0.027349	1	1463	1463		10.587	0	1	13854	+		51551	25561	42677	42708	55853	55853					0.1677407618506095
RSRVVLGETP	10	Unmodified	_RSRVVLGETP_					0	0	0		ENST00000569969.5_2_16:28993234-28993426:+|nuORF;SPNS1|p.R353Pfs*3|1|0.51|ENSG00000169682|chr16:28982442-28982443|-/C|frameshift_variant;nc|ENSG00000169682|Q9H2V7-4|SPNS1;ENSG00000169682|ENST00000311008|SPNS1	ENST00000569969.5_2_16:28993234-28993426:+|nuORF	ENST00000569969.5_2_16:28993234-28993426:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.7957763671875	2	557.32238	1112.63021	2.3346	0.0013011	0.25701	0.00014324	2.5916	0.0014443	557.3219293567304	85.463	0.25018	85.463	85.334	85.585	0					10	5	3	0	0	0	0.026867	1	8962	8962		35.152	9.7019	1	194440			51552	7029	42678	42709	55854	55854					0.07839621628886562
RSRYVISL	8	Unmodified	_RSRYVISL_					0	0	0			REV__ENSG00000007376|ENST00000007264|RPUSD1	REV__ENSG00000007376|ENST00000007264|RPUSD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.76226806640625	2	497.295633	992.576714	0.0085781	4.2658E-06	-0.71976	-0.00035793	-0.71118	-0.00035367	497.29530726094276	75.348	0.43639	72.117	71.915	72.351	-3.2308					12	8	2	0	0	0	0.028476	1	5951	5951		17.365	6.4994	1	10892	+		51553	16435	42679	42710	55855	55855					0.0801286891704649
RSSAALPPLL	10	Unmodified	_RSSAALPPLL_					0	0	0			REV__nc|ENSG00000114948|O75077-3|ADAM23	REV__nc|ENSG00000114948|O75077-3|ADAM23	MULTI-SECPEP	OvCa9_classI_Rep2	2	512.2792358398438	2	512.811116	1023.60768	0.60845	0.00031202	-0.96341	-0.00049405	-0.35495	-0.00018202	512.8104426550958	112.27	1.3317	112.15	111.78	113.12	-0.12174					57	26	3	0	0	0	0.026665	1	10595	10595		42.396	6.7778	1	138030	+		51554	18210	42680	42711	55856	55856					0.09682022231288556
RSSARMRT	8	Unmodified	_RSSARMRT_					0	0	0			REV__ENST00000374163.5_1_1:26872488-26873731:+|nuORF	REV__ENST00000374163.5_1_1:26872488-26873731:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	482.7605285644531	2	482.758892	963.503231	2.1391	0.0010327	0.4447	0.00021468	2.5838	0.0012474	482.7588804234167	57.803	3.1186	54.676	53.456	56.575	-3.1264					158	85	3	0	0	0	0.73938	1	1692	1692		31.955	2.8053	1	89902	+		51555	25059	42681	42712	55857	55857					0.02001997202921757
RSSCKAGLVV	10	Unmodified	_RSSCKAGLVV_					0	0	0		L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|167|1|anti-sense;L1PA11_dup257|chr1:220255199-220257096:+|1.2080698086480397|0.4810012897383803|1.33|429.0|116|3|anti-sense;L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|222|1|anti-sense;L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|292|2|anti-sense	L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|167|1|anti-sense	L1PA5_dup81|chr1:46846138-46850891:+|1.1527782471472834|0.4206475147995111|1.45|420.0|167|1|anti-sense	MSMS	OvCa9_classI_Rep2	2	510.2887268066406	2	510.286951	1018.55935	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.874	1	25.164	24.664	25.664	-2.7097								0	0	0	0.14222	1	522	522		20.947	1.587	1				51556	14648	42682	42713	55858	55858					0.05081205319743276
RSSCLWSL	8	Unmodified	_RSSCLWSL_					0	0	0			REV__ENST00000264638.8_1_17:40851006-40851270:+|nuORF	REV__ENST00000264638.8_1_17:40851006-40851270:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.752197265625	2	476.23947	950.464386	2.1688	0.0010329	-3.1877	-0.0015181	-1.0189	-0.00048524	476.2378585844874	100.11	0.67277	100.11	99.856	100.53	0					39	15	3	0	0	0	0.028476	1	11129	11129		21.96	9.753	1	3292800	+		51557	24018	42683	42714	55859	55859					-0.012827281514546485
RSSCPQLIPR	10	Unmodified	_RSSCPQLIPR_					0	0	0		chr2:170951458-170956436|180|18.13|0.46|5.31|+|1|GORASP2,GORASP2|1;ENST00000486498.1_1_2:171811278-171813015:+|nuORF	chr2:170951458-170956436|180|18.13|0.46|5.31|+|1|GORASP2,GORASP2|1	chr2:170951458-170956436|180|18.13|0.46|5.31|+|1|GORASP2,GORASP2|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.8171997070312	2	578.816407	1155.61826	-1.464	-0.00084738	0.55545	0.0003215	-0.90854	-0.00052588	578.8165792078523	53.555	0.9205	50.347	50.149	51.069	-3.208					39	17	3	0	0	0	0.39172	1	3275	3275		69.628	18.292	1	479250			51558	432	42684	42715	55860	55860					0.0466768161404616
RSSCPQLIPR	10	Unmodified	_RSSCPQLIPR_					0	0	0		chr2:170951458-170956436|180|18.13|0.46|5.31|+|1|GORASP2,GORASP2|1;ENST00000486498.1_1_2:171811278-171813015:+|nuORF	chr2:170951458-170956436|180|18.13|0.46|5.31|+|1|GORASP2,GORASP2|1	chr2:170951458-170956436|180|18.13|0.46|5.31|+|1|GORASP2,GORASP2|1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	578.816407	1155.61826	-1.6508	-0.00095552	0.25819	0.00014944	-1.3926	-0.00080607	578.8167477586833	53.228	0.8419	50.414	50.133	50.975	-2.8139	0.03326	-0.00019561	NaN	69.628	31	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109440			51559	432	42684	42715							0.0466768161404616
RSSDASLLPL	10	Unmodified	_RSSDASLLPL_					0	0	0		PIWIL2|p.G147R|1|0.04|ENSG00000197181|chr8:22283047-22283047|G/A|missense_variant	PIWIL2|p.G147R|1|0.04|ENSG00000197181|chr8:22283047-22283047|G/A|missense_variant	PIWIL2|p.G147R|1|0.04|ENSG00000197181|chr8:22283047-22283047|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2619018554688	2	529.795663	1057.57677	2.6172	0.0013866	-0.23452	-0.00012425	2.3826	0.0012623	529.7954480971349	86.435	0.77059	86.435	86.073	86.844	0					44	18	4	0	0	0	0.026577	1	9120	9120		67.494	8.7117	1	2971200			51560	15504	42685	42716	55861	55861					0.05028824126384279
RSSGPEVTLL	10	Unmodified	_RSSGPEVTLL_					0	0	0			REV__ENST00000262094.9_1_18:52495788-52495893:+|nuORF	REV__ENST00000262094.9_1_18:52495788-52495893:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	530.3060913085938	2	529.795663	1057.57677	-1.1289	-0.00059811	1.1003	0.00058293	-0.028647	-1.5177E-05	529.7962707230297	58.241	1.2048	55.449	54.972	56.177	-2.792					37	23	3	0	0	0	0.026659	1	4277	4277		45.972	5.1941	1	122540	+		51561	23967	42686	42717	55862	55862					0.050288241264070166
RSSGYPLTI	9	Unmodified	_RSSGYPLTI_					0	0	0		ENST00000594207.1_1_19:41774132-41786840:+|nuORF;nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;FXYD5-HNRNPUL1|1|fusion;ENSG00000105323|ENST00000392006|HNRNPUL1	ENST00000594207.1_1_19:41774132-41786840:+|nuORF	ENST00000594207.1_1_19:41774132-41786840:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.2705078125	2	497.271824	992.529095	1.1122	0.00055307	-1.4164	-0.00070435	-0.30424	-0.00015129	497.2710728045279	86.114	1.8416	83.468	83.091	84.933	-2.6463					81	36	4	0	0	0	0.1944	1	7287	7287		77.318	11.514	1	655240			51562	2441	42687	42718	55863	55863					0.03253169926199462
RSSGYPLTI	9	Unmodified	_RSSGYPLTI_					0	0	0		ENST00000594207.1_1_19:41774132-41786840:+|nuORF;nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;FXYD5-HNRNPUL1|1|fusion;ENSG00000105323|ENST00000392006|HNRNPUL1	ENST00000594207.1_1_19:41774132-41786840:+|nuORF	ENST00000594207.1_1_19:41774132-41786840:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	497.271824	992.529095	-1.6068	-0.00079903	1.3613	0.00067693	-0.24554	-0.0001221	497.2724305111481	85.014	1.7378	83.467	82.95	84.688	-1.5462	0.096905	0.0005027	NaN	77.318	84	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	370740			51563	2441	42687	42718							0.03253169926199462
RSSGYPLTI	9	Unmodified	_RSSGYPLTI_					0	0	0		ENST00000594207.1_1_19:41774132-41786840:+|nuORF;nc|ENSG00000105323|Q9BUJ2-3|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-4|HNRNPUL1;nc|ENSG00000105323|Q9BUJ2-2|HNRNPUL1;FXYD5-HNRNPUL1|1|fusion;ENSG00000105323|ENST00000392006|HNRNPUL1	ENST00000594207.1_1_19:41774132-41786840:+|nuORF	ENST00000594207.1_1_19:41774132-41786840:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	497.271824	992.529095	-1.2616	-0.00062738	1.1508	0.00057225	-0.11086	-5.5125E-05	497.2723358560446	85.469	1.8956	83.249	82.744	84.64	-2.2204	-0.12164	0.00029335	NaN	77.318	102	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	724920			51564	2441	42687	42718							0.03253169926199462
RSSIVPMAVK	10	Unmodified	_RSSIVPMAVK_					0	0	0			REV__ENSG00000142698|ENST00000488417|C1orf94	REV__ENSG00000142698|ENST00000488417|C1orf94	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.796875	2	544.318251	1086.62195	0.79464	0.00043254	-4.4741	-0.0024354	-3.6795	-0.0020028	544.31602426075	66.974	0.39618	66.974	66.7	67.096	0					19	9	3	0	0	0	0.026956	1	6238	6238		26.693	1.1189	1	1068900	+		51565	19804	42688	42719	55864	55864					0.08210351387924675
RSSKGSKLK	9	Unmodified	_RSSKGSKLK_					0	0	0			REV__ENSG00000124383|ENST00000244230|MPHOSPH10;REV__MPHOSPH10-ATP6V1B1|1|fusion	REV__ENSG00000124383|ENST00000244230|MPHOSPH10	MULTI-MSMS	OvCa9_classI_Rep3	3	495.8064270019531	2	495.806365	989.598178	-3.0687	-0.0015215	2.6811	0.0013293	-0.38761	-0.00019218	495.80768519755566	143.85	1.3844	142.86	142.49	143.87	-0.9903					67	27	4	0	0	0	0.69403	1	12001	12001		19.997	0.6368	1	103180	+		51566	18684;28676	42689	42720	55865	55865					0.10296253945762146
RSSKKTLTI	9	Unmodified	_RSSKKTLTI_					0	0	0			REV__chr11:14080021-14082454|291|10.69|0.17|5.97|+|0|TE_info:L2c,L2c_dup92281,L2,LINE,acceptor,+,14082454,14082512|SPON1,None|1	REV__chr11:14080021-14082454|291|10.69|0.17|5.97|+|0|TE_info:L2c,L2c_dup92281,L2,LINE,acceptor,+,14082454,14082512|SPON1,None|1	MULTI-MSMS	OvCa99_classI_Rep5	1	517.3201293945312	2	517.321848	1032.62914	1.0332	0.00053452	-3.1446	-0.0016268	-2.1114	-0.0010923	517.320069366738	111.68	1.0506	111.68	111.2	112.25	0					50	22	3	0	0	0	0.31747	1	12726	12726		60.972	0	1	1081700	+		51567	15858	42690	42721	55866	55866					0.11413407259988162
RSSLKKLFA	9	Unmodified	_RSSLKKLFA_					0	0	0			REV__ENST00000580291.5_1_17:21117690-21121415:+|nuORF	REV__ENST00000580291.5_1_17:21117690-21121415:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.8133544921875	2	525.326934	1048.63931	-0.35225	-0.00018505	-0.45127	-0.00023706	-0.80352	-0.00042211	525.3267219342421	94.876	0.639	93.777	93.558	94.197	-1.0995					22	12	2	0	0	0	0.027462	1	8485	8485		17.365	0	1	29283	+		51568	25817	42691	42722	55867	55867					0.11694014985209833
RSSLKLSF	8	Unmodified	_RSSLKLSF_					0	0	0		ENST00000378928.2_1_X:30864096-30870978:-|nuORF	ENST00000378928.2_1_X:30864096-30870978:-|nuORF	ENST00000378928.2_1_X:30864096-30870978:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	468.7983703613281	2	469.276909	936.539266	0.071792	3.3691E-05	-2.5693	-0.0012057	-2.4975	-0.001172	469.27663183936	91.323	0.40891	88.78	88.553	88.962	-2.5425					13	7	3	0	0	0	0.028476	1	7869	7869		37.812	0	1	14065			51569	11113	42692	42723	55868	55868					0.06845777651426488
RSSLPLLLL	9	Unmodified	_RSSLPLLLL_					0	0	0			REV__ENST00000409682.7_1_2:162164925-162172997:+|nuORF	REV__ENST00000409682.7_1_2:162164925-162172997:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	506.3310241699219	2	506.331685	1010.64882	-0.49607	-0.00025117	0.27031	0.00013687	-0.22576	-0.00011431	506.331740533061	135.27	1.2754	135.05	134.74	136.01	-0.22697					65	25	4	0	0	0	0.42676	1	13405	13405		49.442	0	1	139920	+		51570	25474	42693	42724	55869	55869					0.14391783270775704
RSSLPLLLL	9	Unmodified	_RSSLPLLLL_					0	0	0			REV__ENST00000409682.7_1_2:162164925-162172997:+|nuORF	REV__ENST00000409682.7_1_2:162164925-162172997:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.331787109375	2	506.331685	1010.64882	-1.2295	-0.00062251	1.1578	0.00058623	-0.071662	-3.6285E-05	506.3321412541863	124.25	1.9396	122.86	122.47	124.41	-1.3908					58	35	3	0	0	0	0.50149	1	11794	11794		42.396	0	1	86226	+		51571	25474	42693	42724	55870	55870					0.14391783270775704
RSSMLEVLS	9	Unmodified	_RSSMLEVLS_					0	0	0		tr|A0A553SFL0|A0A553SFL0_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09070PE=3SV=1	tr|A0A553SFL0|A0A553SFL0_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09070PE=3SV=1	tr|A0A553SFL0|A0A553SFL0_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09070PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.2265930175781	2	511.270967	1020.52738	-0.61003	-0.00031189	-3.1404	-0.0016056	-3.7504	-0.0019175	511.26974704374635	37.74	0.27585	37.74	37.576	37.851	0					14	5	3	0	0	0	0.027461	1	2078	2078		49.442	5.3247	1	168490			51572	33046	42694	42725	55871	55871					0.017937928459332397
RSSMVFVKLK	10	Unmodified	_RSSMVFVKLK_					0	0	0		tr|A0A7D7A4G8|A0A7D7A4G8_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01670PE=4SV=1	tr|A0A7D7A4G8|A0A7D7A4G8_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01670PE=4SV=1	tr|A0A7D7A4G8|A0A7D7A4G8_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01670PE=4SV=1	MSMS	OvCa9_classI_Rep4_	4	597.856201171875	2	597.855001	1193.69545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.91	1	148.47	147.97	148.97	-1.4344								0	0	0	0.1401	1	14797	14797		23.523	2.5758	1				51573	36144	42695	42726	55872	55872					0.10634899830392897
RSSNNSRVD	9	Unmodified	_RSSNNSRVD_					0	0	0		ENST00000368885.7_1_6:111214736-111214820:+|nuORF	ENST00000368885.7_1_6:111214736-111214820:+|nuORF	ENST00000368885.7_1_6:111214736-111214820:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.7855834960938	2	517.752318	1033.49008	-0.27526	-0.00014252	3.6301	0.0018795	3.3548	0.001737	517.7539261255013	31.584	0.69484	31.584	31.361	32.055	0					22	13	3	0	0	0	0.027461	1	1308	1308		8.6937	0	1	108660			51574	10886	42696	42727	55873	55873					-0.0253216237547349
RSSPREKLK	9	Unmodified	_RSSPREKLK_					0	0	0			REV__nc|ENSG00000119139|Q9UDY2-5|TJP2	REV__nc|ENSG00000119139|Q9UDY2-5|TJP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3154296875	2	550.830372	1099.64619	-0.3846	-0.00021185	-0.064906	-3.5752E-05	-0.44951	-0.0002476	550.8304125229621	30.111	0.39827	30.111	29.935	30.334	0					15	7	3	0	0	0	0.027462	1	1128	1128		44.377	13.874	1	175990	+		51575	28814	42697	42728	55874	55874					0.10035327865784893
RSSPRNKSI	9	Unmodified	_RSSPRNKSI_					0	0	0		ENST00000443736.5_1_7:43921528-43946174:-|nuORF;ENST00000426198.5_1_7:43921528-43965754:-|nuORF;ENST00000336086.10_1_7:43921528-43927138:-|nuORF	ENST00000443736.5_1_7:43921528-43946174:-|nuORF	ENST00000443736.5_1_7:43921528-43946174:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.31396484375	2	522.799072	1043.58359	-1.0638	-0.00055615	0.40225	0.0002103	-0.66154	-0.00034585	522.7991483575812	37.8	0.40707	37.8	37.576	37.983	0					20	8	3	0	0	0	0.027461	1	2092	2092		32.812	0	1	311560			51576	10507	42698	42729	55875	55875					0.06354181797610181
RSSQRAVLL	9	Unmodified	_RSSQRAVLL_					0	0	0		ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.3114624023438	2	515.311815	1028.60908	-1.1328	-0.00058377	1.4683	0.00075664	0.33547	0.00017287	515.3124073314415	54.031	1.1276	50.784	50.517	51.644	-3.2474					67	21	4	0	0	0	0.027459	1	3323	3323		52.937	12.159	1	234430			51577	5190	42699	42730	55876	55876					0.09591656320048969
RSSQRAVLL	9	Unmodified	_RSSQRAVLL_					0	0	0		ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.311815	1028.60908	-1.0033	-0.00051703	1.0661	0.00054937	0.062767	3.2345E-05	515.3122159007485	53.664	1.3916	50.85	50.231	51.623	-2.8139	0.033432	-0.00018833	NaN	52.937	67	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139050			51578	5190	42699	42730							0.09591656320048969
RSSRAELLR	9	Unmodified	_RSSRAELLR_					0	0	0			REV__nc|ENSG00000184856|Q8TCZ7|LINC00308	REV__nc|ENSG00000184856|Q8TCZ7|LINC00308	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7984008789062	2	544.320171	1086.62579	-1.0693	-0.00058206	3.0651	0.0016684	1.9958	0.0010864	544.3220571711424	65.712	0.43643	65.712	65.467	65.904	0					18	10	2	0	0	0	0.027411	1	6024	6024		54.776	3.5836	1	484670	+		51579	29052	42700	42731	55877	55877					0.08594157205970987
RSSRLEPLGG	10	Unmodified	_RSSRLEPLGG_					0	0	0			REV__nc|nan|Q9NRJ1|C8orf17	REV__nc|nan|Q9NRJ1|C8orf17	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.294921875	2	536.298904	1070.58326	-0.21775	-0.00011678	0.48289	0.00025897	0.26514	0.00014219	536.2989933649018	40.873	0.4383	40.873	40.666	41.104	0					16	9	2	0	0	0	0.026523	1	2488	2488		52.937	0	1	296760	+		51580	29244	42701	42732	55878	55878					0.050787620777555276
RSSRLVVQLH	10	Unmodified	_RSSRLVVQLH_					0	0	0		ENST00000538013.5_1_11:67160139-67164890:+|nuORF;ENSG00000172613|ENST00000307980|RAD9A;ENST00000530934.5_1_11:67160948-67163588:+|nuORF;ENST00000529100.5_1_11:67160948-67164696:+|nuORF	ENST00000538013.5_1_11:67160139-67164890:+|nuORF	ENST00000538013.5_1_11:67160139-67164890:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	597.8555908203125	2	597.856921	1193.69929	-0.44405	-0.00026548	0.45165	0.00027002	0.0075957	4.5411E-06	597.8571380443942	25.267	1.0496	25.267	25.092	26.142	0					47	20	5	0	0	0	0.762	1	569	569		23.523	0.94304	1	886080			51581	7308	42702	42733	55879	55879					0.11018705648461946
RSSSDGYTL	9	Unmodified	_RSSSDGYTL_					0	0	0			REV__tr|A0A553SG40|A0A553SG40_NIACIPeroxide-responsivetranscriptionalrepressorPerROS=NialliacirculansOX=1397GN=perRPE=3SV=1	REV__tr|A0A553SG40|A0A553SG40_NIACIPeroxide-responsivetranscriptionalrepressorPerROS=NialliacirculansOX=1397GN=perRPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.30120849609375	2	493.232896	984.451239	-0.6003	-0.00029609	1.7968	0.00088624	1.1965	0.00059016	493.2335191615098	92.326	1.1117	89.784	89.517	90.628	-2.5425					37	21	3	0	0	0	0.027402	1	8066	8066		76.774	8.2894	1	63405	+		51582	29658	42703	42734	55880	55880					-0.04160887729847218
RSSSERAR	8	Unmodified	_RSSSERAR_					0	0	0			REV__BRWD1|p.V1635Wfs*6|1|0.05|ENSG00000185658|chr21:39199514-39199514|A/-|frameshift_variant	REV__BRWD1|p.V1635Wfs*6|1|0.05|ENSG00000185658|chr21:39199514-39199514|A/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.23834228515625	2	474.752121	947.48969	-0.22244	-0.00010561	1.144	0.00054314	0.9216	0.00043753	474.7537841828975	43.251	1.3701	43.251	42.496	43.866	0					54	31	4	0	0	0	0.028476	1	2855	2855		17.365	0.89182	1	191400	+		51583	15714	42704	42735	55881	55881					0.013844626953300576
RSSSLLLL	8	Unmodified	_RSSSLLLL_					0	0	0		ENST00000550254.1_1_12:49580068-49580335:-|nuORF	ENST00000550254.1_1_12:49580068-49580335:-|nuORF	ENST00000550254.1_1_12:49580068-49580335:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.9089660644531	2	444.779285	887.544017	0.66967	0.00029786	0.95664	0.0004255	1.6263	0.00072335	444.77962630560137	41.003	0.35707	41.003	40.838	41.195	0					12	7	2	0	0	0	0.028476	1	2532	2532		30.504	20.238	1	61261			51584	13583	42705	42736	55882	55882					0.09574661794215444
RSSYITGTTL	10	Unmodified	_RSSYITGTTL_					0	0	0		tr|A0A553SGA4|A0A553SGA4_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_10505PE=3SV=1	tr|A0A553SGA4|A0A553SGA4_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_10505PE=3SV=1	tr|A0A553SGA4|A0A553SGA4_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_10505PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.8470458984375	2	549.793121	1097.57169	-0.34297	-0.00018856	1.4063	0.00077317	1.0633	0.00058461	549.7939227806002	71.198	0.55798	71.198	71.031	71.589	0					19	13	2	0	0	0	0.026714	1	6901	6901		28.081	0	1	306140			51585	33134	42706	42737	55883	55883					0.02680520263766084
RSSYRSAID	9	Unmodified	_RSSYRSAID_					0	0	0		ENST00000537404.1_1_13:111299446-111303474:-|nuORF;ENST00000545506.5_1_13:111299446-111317899:-|nuORF;ENST00000540006.5_1_13:111296932-111315941:-|nuORF;ENST00000535398.5_1_13:111298395-111353838:-|nuORF;ENSG00000134905|ENST00000257347|CARS2	ENST00000537404.1_1_13:111299446-111303474:-|nuORF	ENST00000537404.1_1_13:111299446-111303474:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.7901000976562	2	527.767437	1053.52032	-1.4536	-0.00076714	2.0273	0.0010699	0.57373	0.00030279	528.2709101331202	70.489	0.29391	67.008	66.836	67.13	-3.4812					7	5	2	0	0	0	0.027462	1	5317	5317		18.262	0	1	15592			51586	4346	42707	42738	55884	55884					-0.004298037102898888
RSSYWSTPDP	10	Unmodified	_RSSYWSTPDP_					0	0	0			REV__nc|ENSG00000175054|Q13535-2|ATR	REV__nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	OvCa9_classI_Rep4_	4	598.3167724609375	2	598.272552	1194.53055	1.0438	0.00062448	-4.2718	-0.0025557	-3.228	-0.0019312	598.2697550219414	111.27	0.84198	109.75	109.36	110.2	-1.521					26	15	3	0	0	0	0.026734	1	10263	10263		24.519	1.9395	1	44379	+		51587	21866	42708	42739	55885	55885					-0.05893240775708364
RSTEKLVALG	10	Unmodified	_RSTEKLVALG_					0	0	0		tr|A0A553ST57|A0A553ST57_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_04420PE=3SV=1	tr|A0A553ST57|A0A553ST57_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_04420PE=3SV=1	tr|A0A553ST57|A0A553ST57_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_04420PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.7982788085938	2	537.319306	1072.62406	0.5567	0.00029913	3.8029	0.0020434	4.3596	0.0023425	537.8236676049984	78.057	0.25456	75.704	75.596	75.85	-2.3527					6	4	2	0	0	0	0.026688	1	4118	4118		40.778	0	1	7251.4			51588	34456	42709	42740	55886	55886					0.09065103397369967
RSTELLMVEIA	11	Unmodified	_RSTELLMVEIA_					0	0	0			REV__nc|ENSG00000025434|Q13133-3|NR1H3	REV__nc|ENSG00000025434|Q13133-3|NR1H3	MULTI-MSMS	OvCa99_classI_Rep5	1	631.3445434570312	2	631.344663	1260.67477	-0.21268	-0.00013427	-2.1436	-0.0013534	-2.3563	-0.0014876	631.8446447827793	25.075	2.5573	25.075	24.486	27.043	0					102	50	3	0	0	0	0.72466	1	467	467		19.997	1.7347	1	159290	+		51589	16568	42710	42741	55887	55887					0.05486264660089546
RSTEPQLSGV	10	Unmodified	_RSTEPQLSGV_					0	0	0		ENST00000468138.5_1_6:27219498-27223091:+|nuORF;ENSG00000112812|ENST00000230582|PRSS16;PRSS16|p.Q420Hfs*22|1|0.58|ENSG00000112812|chr6:27254801-27254802|-/TCATGTTTCCTCT|frameshift_variant;PRSS16|p.A421Gfs*38|1|0.41|ENSG00000112812|chr6:27254803-27254804|-/GATCCCTGCCTTGTGGC|frameshift_variant	ENST00000468138.5_1_6:27219498-27223091:+|nuORF	ENST00000468138.5_1_6:27219498-27223091:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.7982788085938	2	537.28292	1072.55129	0.58203	0.00031272	2.7624	0.0014842	3.3444	0.0017969	537.2841937639245	75.113	3.5513	72.703	72.29	75.842	-2.4106					134	69	4	0	0	0	0.026653	1	4118	4118		58.23	12.258	1	303170			51590	2929	42711	42742	55888	55888					0.017913496039682286
RSTEPQLSGV	10	Unmodified	_RSTEPQLSGV_					0	0	0		ENST00000468138.5_1_6:27219498-27223091:+|nuORF;ENSG00000112812|ENST00000230582|PRSS16;PRSS16|p.Q420Hfs*22|1|0.58|ENSG00000112812|chr6:27254801-27254802|-/TCATGTTTCCTCT|frameshift_variant;PRSS16|p.A421Gfs*38|1|0.41|ENSG00000112812|chr6:27254803-27254804|-/GATCCCTGCCTTGTGGC|frameshift_variant	ENST00000468138.5_1_6:27219498-27223091:+|nuORF	ENST00000468138.5_1_6:27219498-27223091:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	537.28292	1072.55129	0.53204	0.00028586	2.9353	0.0015771	3.4674	0.001863	537.2842372730681	72.299	0.44901	72.299	72.125	72.574	0	-0.11157	0.00056806	NaN	54.722	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	652150			51591	2929	42711	42742							0.017913496039682286
RSTEPVTLI	9	Unmodified	_RSTEPVTLI_					0	0	0			REV__KDM6A|p.F953Sfs*25|1|0.5|ENSG00000147050|chrX:45078424-45078425|TT/-|frameshift_variant;REV__nc|ENSG00000147050|O15550|KDM6A	REV__nc|ENSG00000147050|O15550|KDM6A	MULTI-MSMS	OvCa9_classI_Rep2	2	508.2903747558594	2	508.292756	1014.57096	-0.83136	-0.00042257	0.50337	0.00025586	-0.32799	-0.00016671	508.2928265703731	115.58	1.632	115.47	114.95	116.58	-0.11777					68	32	4	0	0	0	0.28934	1	11026	11026		64.207	0.901	1	251420	+		51592	28331;20039	42712	42743	55889	55889					0.06425725614735711
RSTFFLVN	8	Unmodified	_RSTFFLVN_					0	0	0		ENST00000541836.5_1_16:15021147-15029115:+|nuORF;ENST00000537112.5_1_16:16421763-16427707:+|nuORF	ENST00000541836.5_1_16:15021147-15029115:+|nuORF	ENST00000541836.5_1_16:15021147-15029115:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	491.7814025878906	2	492.269084	982.523616	-0.7992	-0.00039342	2.2151	0.0010904	1.4159	0.000697	492.2698787798903	84.66	0.80025	83.114	82.797	83.597	-1.5462					21	15	2	0	0	0	0.028476	1	7325	7325		51.335	7.2187	1	11465			51593	13469	42713	42744	55890	55890					0.03165491134382137
RSTFWKLL	8	Unmodified	_RSTFWKLL_					0	0	0		ENST00000487977.1_1_1:207990694-207995609:-|nuORF	ENST00000487977.1_1_1:207990694-207995609:-|nuORF	ENST00000487977.1_1_1:207990694-207995609:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	525.80908203125	2	525.808377	1049.6022	0.78927	0.00041501	-2.2668	-0.0011919	-1.4775	-0.00077687	525.807276493247	150.62	0.90321	150.62	150.34	151.25	0					34	17	3	0	0	0	0.59148	1	17626	17626		65.803	4.8312	1	154560			51594	12659	42714	42745	55891	55891					0.07938343439468554
RSTGKCEESST	11	Unmodified	_RSTGKCEESST_					0	0	0		nc|ENSG00000133710|Q9NQ38-3|SPINK5;ENSG00000133710|ENST00000256084|SPINK5	nc|ENSG00000133710|Q9NQ38-3|SPINK5	nc|ENSG00000133710|Q9NQ38-3|SPINK5	MULTI-SECPEP	OvCa99_classI_Rep5	1	592.2922973632812	2	592.764234	1183.51392	-0.058287	-3.455E-05	-0.30324	-0.00017975	-0.36153	-0.0002143	592.7639193343841	30.309	1.7249	30.309	29.586	31.311	0					72	34	3	0	0	0	0.025759	1	1261	1261		28.081	15.122	1	161450			51595	4234	42715	42746	55892	55892					-0.07050109723991227
RSTGKTLYIL	10	Unmodified	_RSTGKTLYIL_					0	0	0		tr|A0A7D6VRR0|A0A7D6VRR0_9CLOTUvrABCsystemproteinAOS=ClostridiumintestinaleOX=36845GN=uvrAPE=3SV=1	tr|A0A7D6VRR0|A0A7D6VRR0_9CLOTUvrABCsystemproteinAOS=ClostridiumintestinaleOX=36845GN=uvrAPE=3SV=1	tr|A0A7D6VRR0|A0A7D6VRR0_9CLOTUvrABCsystemproteinAOS=ClostridiumintestinaleOX=36845GN=uvrAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	576.3441162109375	2	576.342781	1150.67101	-0.79438	-0.00045784	0.56401	0.00032506	-0.23037	-0.00013277	576.3430198819267	94.583	1.0503	92.114	91.811	92.861	-2.4685					66	20	4	0	0	0	0.62712	1	8292	8292		38.754	1.2454	1	395710			51596	34950	42716	42747	55893	55893					0.10169962948521061
RSTHVLLTI	9	Unmodified	_RSTHVLLTI_					0	0	0			REV__nc|ENSG00000107147|Q5JUK3-4|KCNT1;REV__nc|ENSG00000162687|Q6UVM3-3|KCNT2	REV__nc|ENSG00000162687|Q6UVM3-3|KCNT2	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.347412109375	2	520.316566	1038.61858	1.3511	0.00070302	-3.3172	-0.001726	-1.9661	-0.001023	520.3153216357256	129.27	0.24747	129.05	128.92	129.17	-0.22696					8	4	2	0	0	0	0.027137	1	12687	12687		87.696	24.718	1	10149	+		51597	28784;20764	42717	42748	55894	55894					0.10081424605550637
RSTKVFPLL	9	Unmodified	_RSTKVFPLL_					0	0	0			REV__KIF20A|p.A427Vfs*40|1|0.19|ENSG00000112984|chr5:138184032-138184033|-/TGTTC|frameshift_variant	REV__KIF20A|p.A427Vfs*40|1|0.19|ENSG00000112984|chr5:138184032-138184033|-/TGTTC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.3075561523438	2	530.829309	1059.64407	-0.33698	-0.00017888	-4.2197	-0.0022399	-4.5566	-0.0024188	531.3268214711555	54.031	0.4807	54.031	53.854	54.334	0					26	11	3	0	0	0	0.027462	1	4366	4366		42.396	11.892	1	813070	+		51598	28335	42718	42749	55895	55895					0.11662899127986748
RSTMDPFF	8	Unmodified	_RSTMDPFF_					0	0	0			REV__ENSG00000168754|ENST00000490605|FAM178B	REV__ENSG00000168754|ENST00000490605|FAM178B	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.28411865234375	2	500.731477	999.448402	-0.048602	-2.4336E-05	-0.80228	-0.00040173	-0.85089	-0.00042606	500.73195729670584	81.269	0.15108	79.621	79.514	79.665	-1.6485					4	2	2	0	0	0	0.028476	1	6891	6891		21.96	6.3181	1	4135.3	+		51599	21397	42719	42750	55896	55896					-0.051344343883556576
RSTMTVSDAI	10	Unmodified	_RSTMTVSDAI_					0	0	0		nc|ENSG00000002919|Q9Y5W9-2|SNX11;ENSG00000002919|ENST00000359238|SNX11	nc|ENSG00000002919|Q9Y5W9-2|SNX11	nc|ENSG00000002919|Q9Y5W9-2|SNX11	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.7717895507812	2	540.771331	1079.52811	-0.90695	-0.00049045	1.4852	0.00080313	0.57821	0.00031268	540.7720488690916	98.794	2.1972	96.469	95.827	98.024	-2.3253					131	42	4	0	0	0	0.35465	1	8844	8844		74.255	2.9593	1	759720			51600	815	42720	42751	55897	55897					-0.008474125050270231
RSTPILLLLL	10	Unmodified	_RSTPILLLLL_					0	0	0		nc|ENSG00000008300|Q9NYQ7-2|CELSR3;ENSG00000008300|ENST00000164024|CELSR3;CELSR3|p.Y895Pfs*11|1|0.07|ENSG00000008300|chr3:48659949-48659953|GATAG/-|frameshift_variant	nc|ENSG00000008300|Q9NYQ7-2|CELSR3	nc|ENSG00000008300|Q9NYQ7-2|CELSR3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	569.8353271484375	2	569.881542	1137.74853	-0.68376	-0.00038966	-2.2143	-0.0012619	-2.898	-0.0016515	569.8797224684104	99.917	0.3007	97.592	97.366	97.667	-2.3253					11	5	3	0	0	0	0.027147	1	8906	8906		21.96	1.013	1	40694			51601	916	42721	42752	55898	55898					0.18516600884731815
RSTPLTNIL	9	Unmodified	_RSTPLTNIL_					0	0	0		nc|ENSG00000169876|Q685J3-2|MUC17;ENSG00000169876|ENST00000306151|MUC17	nc|ENSG00000169876|Q685J3-2|MUC17	nc|ENSG00000169876|Q685J3-2|MUC17	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.26751708984375	2	507.800749	1013.58694	-0.38507	-0.00019554	2.2245	0.0011296	1.8394	0.00093407	508.30240403317185	87.003	1.3438	84.376	83.86	85.204	-2.6269					57	26	3	0	0	0	0.027461	1	7470	7470		40.778	2.9666	1	67274			51602	7046	42722	42753	55899	55899					0.08069431851606623
RSTPLTNIL	9	Unmodified	_RSTPLTNIL_					0	0	0		nc|ENSG00000169876|Q685J3-2|MUC17;ENSG00000169876|ENST00000306151|MUC17	nc|ENSG00000169876|Q685J3-2|MUC17	nc|ENSG00000169876|Q685J3-2|MUC17	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.26751708984375	2	507.800749	1013.58694	-1.5562	-0.00079022	-3.8636	-0.001962	-5.4198	-0.0027522	507.79813790803587	87.63	0.50559	85.003	84.698	85.204	-2.6269					14	9	2	0	0	0	0.027461	1	7470	7470		40.778	15.328	1	30544			51603	7046	42722	42753	55900	55900					0.08069431851606623
RSTRGKTVVK	10	Unmodified	_RSTRGKTVVK_					0	0	0			REV__ENST00000257700.6_1_7:105172682-105177020:+|nuORF	REV__ENST00000257700.6_1_7:105172682-105177020:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	566.8104248046875	2	566.351471	1130.68839	-0.16242	-9.1986E-05	2.8117	0.0015924	2.6493	0.0015004	566.3536085963023	55.13	0.30883	51.882	51.695	52.004	-3.2474					10	5	3	0	0	0	0.026659	1	3448	3448		45.972	8.1607	1	16151	+		51604	23903	42723	42754	55901	55901					0.12827303274184487
RSTSGTLPPLL	11	Unmodified	_RSTSGTLPPLL_					0	0	0		ENST00000431081.6_1_11:117059525-117060103:+|nuORF	ENST00000431081.6_1_11:117059525-117060103:+|nuORF	ENST00000431081.6_1_11:117059525-117060103:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	571.3350219726562	2	571.332413	1140.65027	2.1573	0.0012326	-0.27201	-0.00015541	1.8853	0.0010772	571.3321803303681	115.56	1.2955	115.56	115.16	116.46	0					67	27	4	0	0	0	0.31264	1	13232	13232		67.494	3.2864	1	2750900			51605	11796	42724	42755	55902	55902					0.08557372568861865
RSTTTLFLV	9	Unmodified	_RSTTTLFLV_					0	0	0			REV__ENST00000584755.1_1_17:21730896-21731370:+|nuORF	REV__ENST00000584755.1_1_17:21730896-21731370:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.621337890625	2	519.303124	1036.5917	1.5485	0.00080413	0.54011	0.00028048	2.0886	0.0010846	519.3033459625858	90.58	0.95627	90.58	90.101	91.057	0					40	23	3	0	0	0	0.027462	1	9785	9785		37.159	5.6293	1	947910	+		51606	27848	42725	42756	55903	55903					0.07486315994378856
RSTTTTGLI	9	Unmodified	_RSTTTTGLI_					0	0	0			REV__ZAN|p.S2325Lfs*5|1|0.06|ENSG00000146839|chr7:100786133-100786134|-/G|frameshift_variant	REV__ZAN|p.S2325Lfs*5|1|0.06|ENSG00000146839|chr7:100786133-100786134|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.5791931152344	2	475.269281	948.52401	0.12113	5.757E-05	-0.57156	-0.00027164	-0.45042	-0.00021407	475.26896909165646	79.529	1.3435	76.778	76.132	77.475	-2.7514					54	27	3	0	0	0	0.027426	1	6410	6410		35.618	2.8059	1	253360	+		51607	20030	42726	42757	55904	55904					0.04768866063579935
RSTVLTPMFV	10	Unmodified	_RSTVLTPMFV_					0	0	0		PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant;PRKDC|p.P3973Afs*40|1|0.09|ENSG00000253729|chr8:47777811-47777812|-/C|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC	PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant	PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8186645507812	2	575.818084	1149.62162	-0.88976	-0.00051234	0.42323	0.00024371	-0.46652	-0.00026863	575.8182150623272	93.926	1.9141	91.419	91.059	92.973	-2.5072					94	39	4	0	0	0	0.50999	1	8200	8200		52.937	1.6012	1	736500			51608	9437	42727	42758	55905	55905					0.05278931668044606
RSTVWSEATI	10	Unmodified	_RSTVWSEATI_					0	0	0			REV__ENST00000306077.4_1_3:14183553-14183841:+|nuORF	REV__ENST00000306077.4_1_3:14183553-14183841:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	575.2978515625	2	575.29857	1148.58259	-0.84795	-0.00048782	0.245	0.00014095	-0.60294	-0.00034687	575.2986924624174	97.666	0.7856	96.707	96.365	97.15	-0.95856					51	15	4	0	0	0	0.42082	1	8836	8836		65.465	5.3471	1	1043800	+		51609	24292	42728	42759	55906	55906					0.014239226380595937
RSTYLDADKNN	11	Unmodified	_RSTYLDADKNN_					0	0	0			REV__ENSG00000176697|ENST00000356660|BDNF	REV__ENSG00000176697|ENST00000356660|BDNF	MULTI-MSMS	OvCa9_classI_Rep4_	4	432.8752136230469	3	432.877474	1295.61059	0.56695	0.00024542	-4.0329	-0.0017458	-3.4659	-0.0015003	432.87570642953483	20.584	1.013	19.245	18.902	19.915	-1.3386					46	20	3	0	0	0	0.71831	1	70	70		23.378	0.79825	1	78832	+		51610	21964	42729	42760	55907	55907					-0.025387991724983294
RSVASRID	8	Unmodified	_RSVASRID_					0	0	0		ENST00000549583.5_1_12:57998622-57999209:+|nuORF	ENST00000549583.5_1_12:57998622-57999209:+|nuORF	ENST00000549583.5_1_12:57998622-57999209:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	452.2539978027344	2	452.253966	902.493378	0.86129	0.00038952	-0.9954	-0.00045017	-0.13411	-6.065E-05	452.2534208986577	33.657	1.7812	30.947	30.722	32.503	-2.7097					88	35	4	0	0	0	0.66057	1	1277	1277		51.335	1.8939	1	1170300			51611	13576	42730	42761	55908	55908					0.03823132469176471
RSVAVRRVH	9	Unmodified	_RSVAVRRVH_					0	0	0		ENST00000564322.1_1_9:841703-894198:+|nuORF	ENST00000564322.1_1_9:841703-894198:+|nuORF	ENST00000564322.1_1_9:841703-894198:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3322143554688	2	540.330873	1078.64719	0.34656	0.00018726	-1.6282	-0.00087979	-1.2817	-0.00069253	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.65371	1	13513	13513		25.574	8.8567	1	342200			51612	13805	42731	42762	55909	55909					0.1110158702535955
RSVEEQCFC	9	Unmodified	_RSVEEQCFC_					0	0	0			REV__ENST00000449959.6_1_12:10124132-10131716:+|nuORF	REV__ENST00000449959.6_1_12:10124132-10131716:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	550.726318359375	2	550.728609	1099.44266	0.73562	0.00040513	-3.2815	-0.0018072	-2.5459	-0.0014021	550.7263877852107	120.48	1.8402	119.45	119.17	121.01	-1.0271					94	35	5	0	0	0	0.44568	1	9176	9176		47.657	12.039	1	207170	+		51613	25955	42732	42763	55910	55910					-0.10307900962334315
RSVEERVV	8	Unmodified	_RSVEERVV_					0	0	0			REV__nc|ENSG00000177200|Q3L8U1-2|CHD9	REV__nc|ENSG00000177200|Q3L8U1-2|CHD9	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.8079833984375	2	487.274898	972.535243	-0.88863	-0.00043301	0.8447	0.0004116	-0.043935	-2.1408E-05	487.2750749127577	37.379	0.37038	37.379	37.205	37.576	0					16	7	3	0	0	0	0.028476	1	2059	2059		45.952	5.3793	1	134270	+		51614	21991	42733	42764	55911	55911					0.047876881577167296
RSVEFDREFWK	11	Unmodified	_RSVEFDREFWK_					0	0	0		ENSG00000101745|ENST00000262126|ANKRD12;nc|ENSG00000101745|Q6UB98-2|ANKRD12	ENSG00000101745|ENST00000262126|ANKRD12	ENSG00000101745|ENST00000262126|ANKRD12	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.2883605957031	3	500.252764	1497.73646	-0.018871	-9.4405E-06	4.0113	0.0020066	3.9924	0.0019972	500.25493411240274	79.609	0.80721	77.269	76.902	77.709	-2.3399					36	15	3	0	0	0	0.026068	1	4326	4326		21.78	7.6944	1	53664			51615	2197	42734	42765	55912	55912					0.007503324035269543
RSVEPFEPL	9	Unmodified	_RSVEPFEPL_					0	0	0			REV__ENST00000450629.6_1_10:106028948-106037654:+|nuORF	REV__ENST00000450629.6_1_10:106028948-106037654:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.7991333007812	2	537.284931	1072.55531	-1.0242	-0.00055031	1.4591	0.00078393	0.43483	0.00023363	537.2855406987974	77.553	1.2975	74.737	74.536	75.834	-2.8165					47	26	2	0	0	0	0.027411	1	6341	6341		64.207	18.235	1	375620	+		51616	25962	42735	42766	55913	55913					0.021934390976639406
RSVGKVEP	8	Unmodified	_RSVGKVEP_					0	0	0		ERC1-CACNA1C|23|fusion;ERC1-CACNA1C|37|fusion;ERC1-CACNA1C|9|fusion;ERC1-CACNA1C|18|fusion;ERC1-CACNA1C|11|fusion;ERC1-CACNA1C|17|fusion;ERC1-CACNA1C|14|fusion;ERC1-CACNA1C|35|fusion;ERC1-CACNA1C|33|fusion;ERC1-CACNA1C|39|fusion;ERC1-CACNA1C|25|fusion;ERC1-CACNA1C|5|fusion;ERC1-CACNA1C|43|fusion;ERC1-CACNA1C|38|fusion;ERC1-CACNA1C|44|fusion;ERC1-CACNA1C|45|fusion;ERC1-CACNA1C|31|fusion;ERC1-CACNA1C|32|fusion;ERC1-CACNA1C|40|fusion;ERC1-CACNA1C|30|fusion;ERC1-CACNA1C|34|fusion;ERC1-CACNA1C|36|fusion;ERC1-CACNA1C|41|fusion;ERC1-CACNA1C|8|fusion;ERC1-CACNA1C|22|fusion;ERC1-CACNA1C|19|fusion;ERC1-CACNA1C|46|fusion;ERC1-CACNA1C|6|fusion;ERC1-CACNA1C|3|fusion;ERC1-CACNA1C|1|fusion;ERC1-CACNA1C|4|fusion;ERC1-CACNA1C|42|fusion;ERC1-CACNA1C|13|fusion;ERC1-CACNA1C|29|fusion;ERC1-CACNA1C|12|fusion;ERC1-CACNA1C|2|fusion;ERC1-CACNA1C|10|fusion;ERC1-CACNA1C|16|fusion;ERC1-CACNA1C|20|fusion;ERC1-CACNA1C|26|fusion;ERC1-CACNA1C|21|fusion;ERC1-CACNA1C|15|fusion;ERC1-CACNA1C|24|fusion;ERC1-CACNA1C|27|fusion;ERC1-CACNA1C|7|fusion;ERC1-CACNA1C|28|fusion;ENSG00000082805|ENST00000360905|ERC1;nc|ENSG00000082805|Q8IUD2-2|ERC1;nc|ENSG00000082805|Q8IUD2-3|ERC1;nc|ENSG00000082805|Q8IUD2-4|ERC1;nc|ENSG00000082805|Q8IUD2-5|ERC1	ERC1-CACNA1C|23|fusion	ERC1-CACNA1C|23|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	436.2550354003906	2	436.253434	870.492316	2.5996	0.0011341	-0.48875	-0.00021322	2.1108	0.00092086	436.25312453260625	128.08	0.9825	128.08	127.81	128.79	0					32	20	2	0	0	0	0.64371	1	14845	14845		54.776	7.119	1	81406			51617	14314	42736	42767	55914	55914					0.051889181002820806
RSVIGLVTK	9	Unmodified	_RSVIGLVTK_					0	0	0			REV__nc|ENSG00000290649|Q8NH63|OR51H1	REV__nc|ENSG00000290649|Q8NH63|OR51H1	MULTI-MSMS	OvCa9_classI_Rep2	2	486.8134460449219	2	486.813659	971.612765	-0.51721	-0.00025178	0.25856	0.00012587	-0.25865	-0.00012592	486.8136606093423	57.145	2.3904	54.353	53.634	56.024	-2.792					128	47	4	0	0	0	0.2784	1	4053	4053		65.465	3.7741	1	495540	+		51618	29214	42737	42768	55915	55915					0.12582326093900065
RSVIGSGPQLL	11	Unmodified	_RSVIGSGPQLL_					0	0	0		nc|ENSG00000164398|Q9UKU0-2|ACSL6;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6;nc|ENSG00000164398|Q9UKU0-7|ACSL6;nc|ENSG00000164398|Q9UKU0-5|ACSL6;nc|ENSG00000164398|Q9UKU0|ACSL6;nc|ENSG00000164398|Q9UKU0-9|ACSL6;nc|ENSG00000164398|Q9UKU0-6|ACSL6;ENSG00000164398|ENST00000651883|ACSL6	nc|ENSG00000164398|Q9UKU0-2|ACSL6	nc|ENSG00000164398|Q9UKU0-2|ACSL6	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.8326416015625	2	563.83258	1125.65061	2.2134	0.001248	-2.7596	-0.001556	-0.54626	-0.000308	563.8309218791892	37.159	1.6426	34.266	33.943	35.586	-2.8925					74	32	4	0	0	0	0.10496	1	1346	1346		96.034	13.283	1	421830			51619	15145	42738	42769	55916	55916					0.09280792288723205
RSVKSSKEPL	10	Unmodified	_RSVKSSKEPL_					0	0	0		ENST00000383686.2_1_3:110611078-110612293:-|nuORF	ENST00000383686.2_1_3:110611078-110612293:-|nuORF	ENST00000383686.2_1_3:110611078-110612293:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	565.3091430664062	2	565.830037	1129.64552	0.20383	0.00011533	2.7562	0.0015596	2.9601	0.0016749	565.8315984053248	96.423	0.69107	95.395	95.113	95.804	-1.0281					29	13	3	0	0	0	0.026873	1	8730	8730		90.601	10.888	1	80972			51620	11185	42739	42770	55917	55917					0.08588488426107688
RSVKYLLLI	9	Unmodified	_RSVKYLLLI_					0	0	0		ENST00000215862.8_1_22:31363581-31363752:-|nuORF	ENST00000215862.8_1_22:31363581-31363752:-|nuORF	ENST00000215862.8_1_22:31363581-31363752:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.804443359375	2	552.860609	1103.70667	-0.91069	-0.00050348	2.5948	0.0014346	1.6842	0.0009311	552.8624284809251	42.234	0.44958	39.254	39.064	39.513	-2.9804					16	8	3	0	0	0	0.027462	1	1969	1969		11.511	0	1	51408			51621	9660	42740	42771	55918	55918					0.1589604519617751
RSVLKVSSI	9	Unmodified	_RSVLKVSSI_					0	0	0			REV__MKI67|p.K2670Nfs*23|1|0.03|ENSG00000148773|chr10:128103824-128103836|CTTTTCCTTAGGT/-|frameshift_variant	REV__MKI67|p.K2670Nfs*23|1|0.03|ENSG00000148773|chr10:128103824-128103836|CTTTTCCTTAGGT/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.7668151855469	2	494.811116	987.60768	0.84028	0.00041578	-1.5067	-0.00074552	-0.6664	-0.00032974	494.8102770890231	68.181	1.0285	64.691	64.478	65.507	-3.4902					40	20	3	0	0	0	0.027462	1	5109	5109		26.693	7.5894	1	139220	+		51622	20125	42741	42772	55919	55919					0.11338022231291234
RSVLLITQ	8	Unmodified	_RSVLLITQ_					0	0	0		ENSG00000168394|ENST00000354258|TAP1;nc|ENSG00000168394|Q03518-2|TAP1	ENSG00000168394|ENST00000354258|TAP1	ENSG00000168394|ENST00000354258|TAP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.29852294921875	2	465.292559	928.570566	2.124	0.00098827	0.63112	0.00029366	2.7551	0.0012819	465.2927991454961	100.26	0.46091	100.26	99.984	100.44	0					15	10	2	0	0	0	0.028476	1	11107	11107		3.1592	0	1	384800			51623	6901	42742	42773	55920	55920					0.10342350685516521
RSVLQKQVP	9	Unmodified	_RSVLQKQVP_					0	0	0			REV__nc|ENSG00000186638|Q5T7B8-4|KIF24	REV__nc|ENSG00000186638|Q5T7B8-4|KIF24	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3465576171875	2	527.822015	1053.62948	1.5978	0.00084338	1.1872	0.00062661	2.785	0.00147	527.8229807297056	87.318	0.53571	87.318	87.135	87.671	0					18	12	2	0	0	0	0.027462	1	9277	9277		31.53	0	1	447390	+		51624	22604	42743	42774	55921	55921					0.10480826979846825
RSVLVNQHSIL	11	Unmodified	_RSVLVNQHSIL_					0	0	0		ENSG00000144026|ENST00000295208|ZNF514	ENSG00000144026|ENST00000295208|ZNF514	ENSG00000144026|ENST00000295208|ZNF514	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.368896484375	2	633.369861	1264.72517	-2.0264	-0.0012835	1.0791	0.00068348	-0.9473	-0.00059999	633.3704245475564	148.87	1.0967	147.43	146.93	148.02	-1.4344					53	22	3	0	0	0	0.72521	1	14692	14692		12.812	1.3007	1	50822			51625	5118	42744	42775	55922	55922					0.10339555100085818
RSVNELTDQI	10	Unmodified	_RSVNELTDQI_					0	0	0		nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-7|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A;ENST00000605744.1_1_11:76914249-76916658:+|nuORF;ENST00000481328.7_1_11:76905078-76923312:+|nuORF;nc|ENSG00000137474|Q13402-5|MYO7A	nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-5|MYO7A	nc|ENSG00000137474|Q13402-5|MYO7A	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.8013916015625	2	587.806759	1173.59897	0.017411	1.0235E-05	0.048658	2.8602E-05	0.06607	3.8836E-05	587.8065131696856	64.815	0.89683	64.815	64.334	65.231	0					25	21	2	0	0	0	0.026826	1	5869	5869		36.447	7.2767	1	766180			51626	4586;15041	42745	42776	55923	55923					0.01911003804139
RSVNELTDQI	10	Unmodified	_RSVNELTDQI_					0	0	0		nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-7|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A;ENST00000605744.1_1_11:76914249-76916658:+|nuORF;ENST00000481328.7_1_11:76905078-76923312:+|nuORF;nc|ENSG00000137474|Q13402-5|MYO7A	nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-5|MYO7A	nc|ENSG00000137474|Q13402-5|MYO7A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	587.806759	1173.59897	-0.75882	-0.00044604	1.5094	0.00088723	0.75057	0.00044119	587.8070633413714	67.355	0.84182	64.694	64.199	65.041	-2.661	0.030317	0.0014136	NaN	29.17	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27170			51627	4586;15041	42745	42776							0.01911003804139
RSVNELTDQI	10	Unmodified	_RSVNELTDQI_					0	0	0		nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-2|MYO7A;nc|ENSG00000137474|Q13402-7|MYO7A;nc|ENSG00000137474|Q13402-6|MYO7A;ENSG00000137474|ENST00000409709|MYO7A;ENST00000605744.1_1_11:76914249-76916658:+|nuORF;ENST00000481328.7_1_11:76905078-76923312:+|nuORF;nc|ENSG00000137474|Q13402-5|MYO7A	nc|ENSG00000137474|Q13402-8|MYO7A;nc|ENSG00000137474|Q13402-5|MYO7A	nc|ENSG00000137474|Q13402-5|MYO7A	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	587.806759	1173.59897	0.82374	0.0004842	0.3996	0.00023489	1.2233	0.00071909	587.8067983595053	67.972	1.4236	64.482	63.789	65.212	-3.4902	-0.18185	0.00010889	NaN	29.17	61	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142510			51628	4586;15041	42745	42776							0.01911003804139
RSVPILSRQR	10	Unmodified	_RSVPILSRQR_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3;nc|ENSG00000112249|Q8N3C0-4|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3706665039062	2	606.370195	1210.72584	-2.264	-0.0013728	1.1871	0.00071982	-1.0769	-0.00065302	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.73378	1	12435	12435		26.693	3.6504	1	205770			51629	2891	42746	42777	55924	55924					0.12890394539772387
RSVPKLLH	8	Unmodified	_RSVPKLLH_					0	0	0			REV__tr|A0A553SJK5|A0A553SJK5_NIACIFlavinreductasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_17015PE=3SV=1	REV__tr|A0A553SJK5|A0A553SJK5_NIACIFlavinreductasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_17015PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	475.30157470703125	2	475.300719	948.586885	1.8917	0.00089912	0.30197	0.00014353	2.1937	0.0010427	475.3006175824275	77.866	0.54475	77.866	77.629	78.174	0					27	12	3	0	0	0	0.6962	1	7878	7878		44.117	1.6423	1	1322700	+		51630	30013	42747	42778	55925	55925					0.11053476642291571
RSVPLVLLL	9	Unmodified	_RSVPLVLLL_					0	0	0		tr|A0A553SRY2|A0A553SRY2_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_01930PE=4SV=1	tr|A0A553SRY2|A0A553SRY2_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_01930PE=4SV=1	tr|A0A553SRY2|A0A553SRY2_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_01930PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	505.3404235839844	2	505.342052	1008.66955	-1.2256	-0.00061935	0.24452	0.00012356	-0.9811	-0.00049579	505.3419478940064	134.8	1.6252	133.68	133.41	135.03	-1.1226					106	32	5	0	0	0	0.38969	4	10986	10862;10960;10967;10986		52.937	14.131	1	959590			51631	34310	42748	42779	55926;55927;55928;55929	55929					0.16556373650416845
RSVPLVLLL	9	Unmodified	_RSVPLVLLL_					0	0	0		tr|A0A553SRY2|A0A553SRY2_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_01930PE=4SV=1	tr|A0A553SRY2|A0A553SRY2_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_01930PE=4SV=1	tr|A0A553SRY2|A0A553SRY2_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_01930PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.3421630859375	2	505.342052	1008.66955	2.4457	0.0012359	-3.7738	-0.0019071	-1.3281	-0.00067113	505.33994217432223	135.22	1.8729	133.68	133.11	134.99	-1.5437					124	33	5	0	0	0	0.3076	3	13097	13097;13195;13225		62.107	10.769	1	1621800			51632	34310	42748	42779	55930;55931;55932	55930					0.16556373650416845
RSVPVLIL	8	Unmodified	_RSVPVLIL_					0	0	0		CCDC80|p.R84I|1|0.05|ENSG00000091986|chr3:112639655-112639655|C/A|missense_variant	CCDC80|p.R84I|1|0.05|ENSG00000091986|chr3:112639655-112639655|C/A|missense_variant	CCDC80|p.R84I|1|0.05|ENSG00000091986|chr3:112639655-112639655|C/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	448.80010986328125	2	448.80002	895.585488	1.1656	0.00052313	-1.2994	-0.00058316	-0.13374	-6.0023E-05	448.7993403222566	118.17	1.7331	118.03	117.69	119.42	-0.14755					87	34	4	0	0	0	0.45246	1	11321	11321		82.305	5.4584	1	562320			51633	196	42749	42780	55933	55933					0.13351842553538518
RSVPVRLHV	9	Unmodified	_RSVPVRLHV_					0	0	0		ENST00000513139.1_1_4:177241188-177248429:+|nuORF;ENSG00000129128|ENST00000503362|SPCS3;ENST00000507678.5_1_4:177241188-177241371:+|nuORF	ENST00000513139.1_1_4:177241188-177248429:+|nuORF	ENST00000513139.1_1_4:177241188-177248429:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.3099975585938	2	531.830175	1061.6458	0.043536	2.3154E-05	-0.16608	-8.8324E-05	-0.12254	-6.517E-05	531.8299217891897	52.907	0.3902	52.907	52.697	53.087	0					18	8	3	0	0	0	0.027462	1	4184	4184		26.693	0	1	894800			51634	3920	42750	42781	55934	55934					0.11743952936603819
RSVQIPHRL	9	Unmodified	_RSVQIPHRL_					0	0	0			REV__ENST00000474481.1_1_1:1420233-1421362:+|nuORF	REV__ENST00000474481.1_1_1:1420233-1421362:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	553.3320922851562	2	553.333082	1104.65161	-5.4992	-0.0030429	4.1358	0.0022884	-1.3634	-0.00075444	553.3351787520976	152.55	1.4112	151.58	151.19	152.61	-0.97301					72	28	4	0	0	0	0.69666	1	13041	13041		19.104	0.84144	1	153020	+		51635	20636	42751	42782	55935	55935					0.10347051448275124
RSVQRAINQV	10	Unmodified	_RSVQRAINQV_					0	0	0			REV__ENST00000602204.1_1_19:16980786-16982347:+|nuORF	REV__ENST00000602204.1_1_19:16980786-16982347:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.3549194335938	2	585.838728	1169.6629	-0.21962	-0.00012866	-2.9805	-0.0017461	-3.2001	-0.0018747	586.337674475624	72.974	0.31313	72.974	72.842	73.155	0					10	7	2	0	0	0	0.026674	1	7132	7132		65.465	26.659	1	224110	+		51636	28040	42752	42783	55936	55936					0.08485828751736335
RSVRNSRAEV	10	Unmodified	_RSVRNSRAEV_					0	0	0		tr|A0A553SK78|A0A553SK78_NIACIValine--tRNAligaseOS=NialliacirculansOX=1397GN=valSPE=3SV=1	tr|A0A553SK78|A0A553SK78_NIACIValine--tRNAligaseOS=NialliacirculansOX=1397GN=valSPE=3SV=1	tr|A0A553SK78|A0A553SK78_NIACIValine--tRNAligaseOS=NialliacirculansOX=1397GN=valSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	587.2952270507812	2	587.325985	1172.63742	-1.4312	-0.00084057	2.3116	0.0013577	0.88047	0.00051712	587.3270528223851	118.42	0.73692	117.08	116.79	117.52	-1.3444					18	13	2	0	0	0	0.027001	1	11132	11132		21.686	0	1	27078			51637	33589	42753	42784	55937	55937					0.05800354229313598
RSVRRRYRRWR	11	Unmodified	_RSVRRRYRRWR_					0	0	0		ENST00000488071.1_1_11:64494766-64496427:-|nuORF;ENST00000421556.5_1_11:64494482-64496427:-|nuORF;ENST00000464324.5_1_11:64494482-64496427:-|nuORF	ENST00000488071.1_1_11:64494766-64496427:-|nuORF	ENST00000488071.1_1_11:64494766-64496427:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	549.3233642578125	3	549.661085	1645.96143	-1.9738	-0.0010849	0.14108	7.7544E-05	-1.8328	-0.0010074	549.6612613866162	35.837	0.4003	33.127	32.9	33.3	-2.7097					13	7	2	0	0	0	0.026401	1	1479	1479		12.433	9.4069	1	16473			51638	11684	42754	42785	55938	55938					0.16428344507767179
RSVSHLRKV	9	Unmodified	_RSVSHLRKV_					0	0	0		ENSG00000164111|ENST00000296511|ANXA5;ENST00000506395.5_1_4:122589625-122599515:-|nuORF;ANXA5|p.D211H|1|0.12|ENSG00000164111|chr4:121671637-121671637|C/G|missense_variant	ENSG00000164111|ENST00000296511|ANXA5	ENSG00000164111|ENST00000296511|ANXA5	MULTI-MSMS	OvCa99_classI_Rep5	1	541.33349609375	2	541.333082	1080.65161	-0.96764	-0.00052382	0.89264	0.00048322	-0.075002	-4.0601E-05	541.3334404335878	27.862	0.5489	27.862	27.691	28.24	0					30	10	5	0	0	0	0.49652	1	856	856		42.864	0.38981	1	483560			51639	6410	42755	42786	55939	55939					0.11451051448261751
RSVSIGYLLV	10	Unmodified	_RSVSIGYLLV_					0	0	0		ENSG00000134871|ENST00000360467|COL4A2	ENSG00000134871|ENST00000360467|COL4A2	ENSG00000134871|ENST00000360467|COL4A2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.8102416992188	2	553.832049	1105.64954	-0.48683	-0.00026962	0.36119	0.00020004	-0.12564	-6.9581E-05	553.8321547500378	99.515	1.5376	97.19	96.382	97.919	-2.3253					54	29	3	0	0	0	0.026826	1	8784	8784		36.447	7.2767	1	77385			51640	4341	42756	42787	55940	55940					0.10094577919812764
RSVSIGYLLV	10	Unmodified	_RSVSIGYLLV_					0	0	0		ENSG00000134871|ENST00000360467|COL4A2	ENSG00000134871|ENST00000360467|COL4A2	ENSG00000134871|ENST00000360467|COL4A2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	553.832049	1105.64954	0.45844	0.0002539	-0.45013	-0.0002493	0.0083077	4.6011E-06	553.8316429498186	98.076	1.1802	97.183	96.727	97.907	-0.89305	-0.039709	-0.00049846	NaN	29.17	51	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53126			51641	4341	42756	42787							0.10094577919812764
RSVSRRHGR	9	Unmodified	_RSVSRRHGR_					0	0	0			REV__nc|ENSG00000101940|Q9H1Z4-2|WDR13	REV__nc|ENSG00000101940|Q9H1Z4-2|WDR13	MULTI-MSMS	OvCa9_classI_Rep2	2	555.822265625	2	555.821204	1109.62786	4.315	0.0023984	-2.2311	-0.0012401	2.0839	0.0011583	555.8198103416565	25.114	1.0176	22.405	22.261	23.279	-2.7097					54	22	4	0	0	0	0.44568	1	208	208		47.657	12.039	1	302060	+		51642	17527	42757	42788	55941	55941					0.07742630734469458
RSVTETDRFC	10	Unmodified	_RSVTETDRFC_					0	0	0			REV__chr16:30189615-30193358|381|11.25|0.68|4.04|-|2|None,BOLA2B|1	REV__chr16:30189615-30193358|381|11.25|0.68|4.04|-|2|None,BOLA2B|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	607.8694458007812	2	607.285137	1212.55572	0.76351	0.00046367	-3.9927	-0.0024247	-3.2292	-0.001961	607.2831006388627	114.19	0.40818	114.19	114.06	114.47	0					12	8	2	0	0	0	0.026714	1	13034	13034		35.152	0	1	39908	+		51643	15933	42758	42789	55942	55942					-0.042055092447981224
RSVTGVPLL	9	Unmodified	_RSVTGVPLL_					0	0	0			REV__sp|Q6SW89|UL43_HCMVMTegumentproteinUL43OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL43PE=3SV=1	REV__sp|Q6SW89|UL43_HCMVMTegumentproteinUL43OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL43PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.282958984375	2	471.292559	940.570566	0.69552	0.00032779	-0.16219	-7.644E-05	0.53333	0.00025135	471.2920307650466	78.144	0.67485	75.327	75.067	75.742	-2.8165					26	13	3	0	0	0	0.027455	1	6289	6289		51.335	10.763	1	48424	+		51644	29430	42759	42790	55943	55943					0.09790350685523208
RSVTGVPLL	9	Unmodified	_RSVTGVPLL_					0	0	0			REV__sp|Q6SW89|UL43_HCMVMTegumentproteinUL43OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL43PE=3SV=1	REV__sp|Q6SW89|UL43_HCMVMTegumentproteinUL43OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL43PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	471.292559	940.570566	-0.56363	-0.00026564	0.22961	0.00010821	-0.33402	-0.00015742	471.2924620720373	77.02	1.2511	75.231	74.843	76.094	-1.7894	0.089999	3.4428E-05	NaN	47.657	32	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21535	+		51645	29430	42759	42790							0.09790350685523208
RSVTGVPLL	9	Unmodified	_RSVTGVPLL_					0	0	0			REV__sp|Q6SW89|UL43_HCMVMTegumentproteinUL43OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL43PE=3SV=1	REV__sp|Q6SW89|UL43_HCMVMTegumentproteinUL43OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL43PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	471.292559	940.570566	-0.41452	-0.00019536	0.27002	0.00012726	-0.1445	-6.8101E-05	471.2923975150625	77.236	0.96673	74.864	74.61	75.577	-2.3715	-0.27647	7.2524E-05	NaN	47.657	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46382	+		51646	29430	42759	42790							0.09790350685523208
RSVVIRPTK	9	Unmodified	_RSVVIRPTK_					0	0	0			REV__ENSG00000104331|ENST00000262644|BPNT2	REV__ENSG00000104331|ENST00000262644|BPNT2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.33154296875	2	528.337833	1054.66111	-0.80515	-0.00042539	3.8138	0.002015	3.0087	0.0015896	528.3399504334251	57.916	0.3047	54.571	54.393	54.698	-3.3449					8	5	2	0	0	0	0.027462	1	3800	3800		21.96	0	1	15947	+		51647	17660	42760	42791	55944	55944					0.13596819733811571
RSVVLKLI	8	Unmodified	_RSVVLKLI_					0	0	0			REV__ENSG00000073910|ENST00000542859|FRY;REV__ENSG00000075539|ENST00000358350|FRYL	REV__ENSG00000075539|ENST00000358350|FRYL	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.28021240234375	2	464.32112	926.627687	1.3733	0.00063767	-4.1911	-0.001946	-2.8177	-0.0013083	464.3194515357018	81.635	0.36229	81.635	81.413	81.776	0					11	8	2	0	0	0	0.028476	1	8410	8410		16.473	4.2663	1	193180	+		51648	16974;16942	42761	42792	55945	55945					0.16143817961904006
RSVVLVAAL	9	Unmodified	_RSVVLVAAL_					0	0	0			REV__nc|ENSG00000022556|Q9NX02-4|NLRP2	REV__nc|ENSG00000022556|Q9NX02-4|NLRP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.2803039550781	2	464.302927	926.591301	-0.19714	-9.1532E-05	-4.3893	-0.002038	-4.5864	-0.0021295	464.3009210287767	83.614	0.29008	80.951	80.828	81.118	-2.6629					10	5	2	0	0	0	0.027455	1	6973	6973		51.335	0	1	19140	+		51649	16552	42762	42793	55946	55946					0.125069410651804
RSVVVLWL	8	Unmodified	_RSVVVLWL_					0	0	0			REV__tr|A0A7D7A4I4|A0A7D7A4I4_9CLOTUPF0316proteinHZF06_01905OS=ClostridiumintestinaleOX=36845GN=HZF06_01905PE=3SV=1	REV__tr|A0A7D7A4I4|A0A7D7A4I4_9CLOTUPF0316proteinHZF06_01905OS=ClostridiumintestinaleOX=36845GN=HZF06_01905PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.30413818359375	2	486.30547	970.596387	0.016353	7.9527E-06	-0.39252	-0.00019088	-0.37617	-0.00018293	486.3051966587704	121.94	2.2082	120.59	120.11	122.32	-1.3479					102	43	4	0	0	0	0.72896	1	11485	11485		37.159	0	1	873390	+		51650	32610	42763	42794	55947	55947					0.10991244927799926
RSVWIPDL	8	Unmodified	_RSVWIPDL_					0	0	0		ENST00000528307.5_1_11:14535957-14539209:-|nuORF	ENST00000528307.5_1_11:14535957-14539209:-|nuORF	ENST00000528307.5_1_11:14535957-14539209:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.79779052734375	2	493.276909	984.539266	-0.85524	-0.00042187	1.3515	0.00066667	0.49626	0.0002448	493.27636658469845	100.17	0.24988	97.841	97.617	97.867	-2.3253					6	4	2	0	0	0	0.028476	1	8952	8952		23.042	4.7181	1	7676.3			51651	13251	42764	42795	55948	55948					0.04637777651419128
RSVWLGPI	8	Unmodified	_RSVWLGPI_					0	0	0			REV__ENST00000506402.5_1_4:514890-515999:+|nuORF	REV__ENST00000506402.5_1_4:514890-515999:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.2855529785156	2	464.27417	926.533787	-0.5229	-0.00024277	-2.9511	-0.0013701	-3.474	-0.0016129	464.273117339004	96.16	0.2027	93.734	93.659	93.862	-2.4256					5	3	2	0	0	0	0.028476	1	8474	8474		35.201	1.6851	1	28503	+		51652	26886	42765	42796	55949	55949					0.06758098859597794
RSVYSWDIV	9	Unmodified	_RSVYSWDIV_					0	0	0		nc|ENSG00000100353|O15371-2|EIF3D;nc|ENSG00000100353|O15371-3|EIF3D;ENSG00000100353|ENST00000216190|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	nc|ENSG00000100353|O15371-2|EIF3D	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.2852172851562	2	562.790381	1123.56621	0.16819	9.4655E-05	4.182	0.0023536	4.3502	0.0024483	562.7935776775489	35.822	0.50357	35.822	35.661	36.164	0					15	10	2	0	0	0	0.027462	1	1874	1874		44.117	29.98	1	75957			51653	2054	42766	42797	55950	55950					0.009368414719347129
RSWALEEAPP	10	Unmodified	_RSWALEEAPP_					0	0	0			REV__ENST00000240719.7_1_19:58038771-58038957:+|nuORF	REV__ENST00000240719.7_1_19:58038771-58038957:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	578.286376953125	2	578.293288	1154.57202	-5.4888	-0.0031741	-0.73844	-0.00042704	-6.2272	-0.0036012	578.2927598597663	159.22	4.1126	158.99	158.53	162.64	-0.22697					262	82	5	0	0	0	0.53885	1	16475	16475		49.442	8.0149	1	1073400	+		51654	23822	42767	42798	55951	55951					0.0009193998362206912
RSWDYRYV	8	Unmodified	_RSWDYRYV_					0	0	0		AluSx3_dup13283|chr7:102550522-102550823:-|1.2518865361059783|0.3469297599780967|1.85|428.0|15|2|anti-sense	AluSx3_dup13283|chr7:102550522-102550823:-|1.2518865361059783|0.3469297599780967|1.85|428.0|15|2|anti-sense	AluSx3_dup13283|chr7:102550522-102550823:-|1.2518865361059783|0.3469297599780967|1.85|428.0|15|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	571.8449096679688	2	572.780348	1143.54614	0.81493	0.00046678	-2.6767	-0.0015332	-1.8618	-0.0010664	572.7789029933069	121.85	0.41843	120.82	120.64	121.06	-1.0286					10	7	2	0	0	0	0.028476	1	9367	9367		19.997	1.7347	1	15902			51655	79	42768	42799	55952	55952					-0.01988909468013844
RSWFGHRA	8	Unmodified	_RSWFGHRA_					0	0	0			REV__ENST00000358901.10_1_9:35068350-35072606:-|nuORF	REV__ENST00000358901.10_1_9:35068350-35072606:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.7959289550781	2	508.762292	1015.51003	2.739	0.0013935	3.252	0.0016545	5.991	0.003048	508.7644941128966	99.327	0.2504	99.327	99.154	99.405	0					8	5	2	0	0	0	0.028476	1	10968	10968		12.207	0	1	93377	+		51656	24806	42769	42800	55953	55953					0.002896781458048281
RSWFGNLI	8	Unmodified	_RSWFGNLI_					0	0	0			REV__ENST00000353617.6_1_4:153832118-153832178:+|nuORF	REV__ENST00000353617.6_1_4:153832118-153832178:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.7823181152344	2	496.769252	991.52395	-1.1439	-0.00056824	-4.214	-0.0020934	-5.3578	-0.0026616	496.76703347572237	44.693	0.56146	41.655	41.514	42.075	-3.0385					16	10	2	0	0	0	0.028476	1	2228	2228		29.15	4.9468	1	30502	+		51657	24730	42770	42801	55954	55954					0.027849108542341128
RSWGKERAP	9	Unmodified	_RSWGKERAP_					0	0	0		nc|ENSG00000012061|P07992-3|ERCC1	nc|ENSG00000012061|P07992-3|ERCC1	nc|ENSG00000012061|P07992-3|ERCC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.7913818359375	2	543.793789	1085.57303	-0.69459	-0.00037771	-0.66463	-0.00036142	-1.3592	-0.00073914	544.295636625171	49.461	0.34456	49.461	49.206	49.55	0					11	7	2	0	0	0	0.027462	1	3660	3660		39.253	10.083	1	176250			51658	14864	42771	42802	55955	55955					0.03366199143169979
RSWRGVLLI	9	Unmodified	_RSWRGVLLI_					0	0	0			REV__ENST00000539976.1_1_16:89981432-89981549:+|nuORF	REV__ENST00000539976.1_1_16:89981432-89981549:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.7763671875	2	550.340375	1098.6662	-0.31143	-0.00017139	-1.1909	-0.00065538	-1.5023	-0.00082677	550.339546954602	58.696	0.75326	55.304	55.051	55.805	-3.392					20	14	2	0	0	0	0.027448	1	3898	3898		20.947	2.6848	1	27427	+		51659	27341	42772	42803	55956	55956					0.12081123596431098
RSYKKELDE	9	Unmodified	_RSYKKELDE_					0	0	0			REV__ENSG00000174233|ENST00000357869|ADCY6	REV__ENSG00000174233|ENST00000357869|ADCY6	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.3306274414062	2	584.303852	1166.59315	1.8198	0.0010633	4.4598	0.0026059	6.2795	0.0036691	584.3066871111569	95.309	0.53817	95.309	95.161	95.699	0					20	12	2	0	0	0	0.027453	1	10408	10408		45.972	0	1	1275900	+		51660	21819	42773	42804	55957	55957					0.01651905292465017
RSYLDGRGAGG	11	Unmodified	_RSYLDGRGAGG_					0	0	0			REV__PLXND1|p.E1457*|1|0.09|ENSG00000004399|chr3:129565492-129565493|-/A|frameshift_variant	REV__PLXND1|p.E1457*|1|0.09|ENSG00000004399|chr3:129565492-129565493|-/A|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.831298828125	2	554.778336	1107.54212	-0.69184	-0.00038382	2.5446	0.0014117	1.8528	0.0010279	554.7795652712225	65.534	0.59471	65.534	65.309	65.904	0					37	14	3	0	0	0	0.025714	1	6061	6061		31.634	13.31	1	2189800	+		51661	16378	42774	42805	55958	55958					-0.00734998961729616
RSYLLLLY	8	Unmodified	_RSYLLLLY_					0	0	0		ENSG00000119227|ENST00000412723|PIGZ	ENSG00000119227|ENST00000412723|PIGZ	ENSG00000119227|ENST00000412723|PIGZ	MULTI-MSMS	OvCa99_classI_Rep5	1	521.314208984375	2	520.810585	1039.60662	0.37393	0.00019475	2.1953	0.0011433	2.5693	0.0013381	520.8116311629591	153.38	1.4209	153.38	152.75	154.17	0					47	28	3	0	0	0	0.74361	1	18005	18005		29.842	0	1	377760			51662	3347	42775	42806	55959	55959					0.08839807862386806
RSYSDPPLK	9	Unmodified	_RSYSDPPLK_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	OvCa9_classI_Rep2	2	531.7826538085938	2	531.782556	1061.55056	-1.5399	-0.00081889	1.1515	0.00061235	-0.38839	-0.00020654	531.7830281716216	47.648	1.6888	44.939	44.39	46.079	-2.7097					102	33	5	0	0	0	0.17606	1	2907	2907		80.455	3.6805	1	612800			51663	7039	42776	42807	55960	55960					0.022245549548870258
RSYSDPPLK	9	Unmodified	_RSYSDPPLK_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.7842407226562	2	531.782556	1061.55056	-0.8739	-0.00046473	-0.0088073	-4.6836E-06	-0.88271	-0.00046941	531.7824678459274	47.97	2.462	44.862	44.287	46.749	-3.1077					144	47	5	0	0	0	0.060996	1	2623	2623		112.41	19.215	1	3227400			51664	7039	42776	42807	55961	55961					0.022245549548870258
RSYSMKLD	8	Unmodified	_RSYSMKLD_					0	0	0			REV__nc|ENSG00000226941|Q15415-2|RBMY1F	REV__nc|ENSG00000226941|Q15415-2|RBMY1F	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.8042907714844	2	500.250034	998.485516	0.60577	0.00030304	-2.0709	-0.0010359	-1.4651	-0.0007329	500.24911749305227	81.117	0.58549	81.117	80.744	81.329	0					23	13	3	0	0	0	0.028476	1	8318	8318		30.504	0	1	283870	+		51665	21484	42777	42808	55962	55962					-0.013787628426030096
RSYVQSNVE	9	Unmodified	_RSYVQSNVE_					0	0	0			REV__ENSG00000054793|ENST00000338821|ATP9A	REV__ENSG00000054793|ENST00000338821|ATP9A	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.3467407226562	2	541.26727	1080.51999	-0.35129	-0.00019014	4.126	0.0022333	3.7747	0.0020431	541.2695138104514	82.128	0.79962	79.832	79.484	80.283	-2.2963					25	15	3	0	0	0	0.027425	1	4656	4656		60.118	0	1	17448	+		51666	16703	42778	42809	55963	55963					-0.017052234301445424
RTAACELPER	10	Unmodified	_RTAACELPER_					0	0	0		ENST00000422441.5_1_3:37574873-37583937:+|nuORF	ENST00000422441.5_1_3:37574873-37583937:+|nuORF	ENST00000422441.5_1_3:37574873-37583937:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	573.286865234375	2	573.290222	1144.56589	-2.583	-0.0014808	-4.0524	-0.0023232	-6.6354	-0.003804	573.2878155681369	34.545	1.0883	31.835	31.612	32.701	-2.7097					58	21	5	0	0	0	0.22511	2	1325	1319;1325		90.601	5.44	1	313120			51667	11693	42779	42810	55964;55965	55965					-0.0006090151955504552
RTAAVVVR	8	Unmodified	_RTAAVVVR_					0	0	0			REV__nc|ENSG00000162736|Q92542-2|NCSTN	REV__nc|ENSG00000162736|Q92542-2|NCSTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	436.9341735839844	2	436.277244	870.539935	0.71383	0.00031143	0.85869	0.00037462	1.5725	0.00068605	436.277283461241	30.751	0.29892	30.751	30.532	30.831	0					8	5	2	0	0	0	0.028476	1	1189	1189		37.159	17.799	1	12201	+		51668	20773	42780	42811	55966	55966					0.09948617091140477
RTAGAIRGR	9	Unmodified	_RTAGAIRGR_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;nc|ENSG00000066032|P26232-2|CTNNA2;nc|ENSG00000066032|P26232-5|CTNNA2;ENSG00000066032|ENST00000402739|CTNNA2;nc|ENSG00000066032|P26232-4|CTNNA2;nc|ENSG00000066032|P26232-6|CTNNA2;nc|ENSG00000066032|P26232-3|CTNNA2	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	OvCa9_classI_Rep2	2	479.28863525390625	2	479.288674	956.562795	1.7631	0.00084502	-1.8615	-0.0008922	-0.098445	-4.7184E-05	479.2876787398958	28.181	0.755	25.471	25.294	26.049	-2.7097					33	15	3	0	0	0	0.55011	1	561	561		37.812	0.65241	1	110940			51669	1131	42781	42812	55967	55967					0.08277636208617878
RTAHVILRY	9	Unmodified	_RTAHVILRY_					0	0	0		ENSG00000159461|ENST00000290649|AMFR	ENSG00000159461|ENST00000290649|AMFR	ENSG00000159461|ENST00000290649|AMFR	MULTI-MSMS	OvCa9_classI_Rep2	2	564.8343505859375	2	564.835457	1127.65636	-0.86943	-0.00049109	0.30524	0.00017241	-0.56419	-0.00031867	564.8354063300067	55.53	0.54649	52.726	52.382	52.928	-2.804					30	10	4	0	0	0	0.48047	1	3877	3877		44.377	6.5657	1	267850			51670	6015	42782	42813	55968	55968					0.09763935591035988
RTAPRLPSVQP	11	Unmodified	_RTAPRLPSVQP_					0	0	0			REV__nc|ENSG00000185252|Q16587-5|ZNF74	REV__nc|ENSG00000185252|Q16587-5|ZNF74	MULTI-SECPEP	OvCa99_classI_Rep5	1	612.3125	2	611.356754	1220.69895	1.2636	0.0007725	-0.69333	-0.00042387	0.57026	0.00034863	611.3564926604278	155.15	2.0626	155.15	153.93	155.99	0					87	40	4	0	0	0	0.025638	1	18103	18103		30.318	1.1477	1	78302	+		51671	26713	42783	42814	55969	55969					0.09743285928584555
RTAQEAAVF	9	Unmodified	_RTAQEAAVF_					0	0	0		nc|ENSG00000124721|Q96JB1-2|DNAH8;nc|ENSG00000124721|Q96JB1|DNAH8;ENSG00000124721|ENST00000327475|DNAH8;DNAH8|p.D2535Vfs*3|1|0.07|ENSG00000124721|chr6:38883994-38883994|A/-|frameshift_variant;DNAH8|p.L2994Pfs*25|1|0.09|ENSG00000124721|chr6:38909633-38909634|-/CCCAGGCTCAAGCCATCCTCTCA|frameshift_variant;DNAH8|p.H3947Qfs*36|1|0.13|ENSG00000124721|chr6:38971631-38971638|ATGCTCGA/-|frameshift_variant	nc|ENSG00000124721|Q96JB1-2|DNAH8	nc|ENSG00000124721|Q96JB1-2|DNAH8	MSMS	OvCa9_classI_Rep2	2	496.7633361816406	2	496.761623	991.508694	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.607	1	26.898	26.398	27.398	-2.7097								0	0	0	0.2824	1	729	729		12.959	0	1				51672	3675	42784	42815	55970	55970					0.012599992663808735
RTAQKLRDV	9	Unmodified	_RTAQKLRDV_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-SECPEP	OvCa9_classI_Rep3	3	544.3031005859375	2	543.822547	1085.63054	-0.52475	-0.00028537	-3.2746	-0.0017808	-3.7993	-0.0020662	543.8204572113428	78.076	1.2027	75.724	75.151	76.354	-2.3527					39	23	2	0	0	0	0.027411	1	4165	4165		54.776	1.4249	1	141720			51673	7740	42785	42816	55971	55971					0.09115041348741215
RTAQKLRDV	9	Unmodified	_RTAQKLRDV_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MATCH	OvCa9_classI_Rep2	2		2	543.822547	1085.63054	-0.83283	-0.00045291	-3.2744	-0.0017807	-4.1072	-0.0022336	543.820581259385	77.166	0.83384	75.377	75.051	75.884	-1.7894	-0.15734	0.00055038	NaN	54.776	39	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132190			51674	7740	42785	42816							0.09115041348741215
RTAQKLRDV	9	Unmodified	_RTAQKLRDV_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	543.822547	1085.63054	-0.46882	-0.00025495	-4.1825	-0.0022746	-4.6514	-0.0025295	543.8202399757968	78.363	0.8522	75.547	75.214	76.067	-2.8165	0.012747	-0.00043734	NaN	54.776	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166060			51675	7740	42785	42816							0.09115041348741215
RTASRIIQ	8	Unmodified	_RTASRIIQ_					0	0	0			REV__tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	REV__tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	472.78521728515625	2	472.785433	943.556313	1.3192	0.0006237	-1.3249	-0.0006264	-0.0057136	-2.7013E-06	472.78465285146206	29.187	1.0318	26.478	26.18	27.212	-2.7097					38	21	3	0	0	0	0.745	1	680	680		29.15	4.6304	1	56287	+		51676	31603	42786	42817	55972	55972					0.08227698257235261
RTAVKPTPI	9	Unmodified	_RTAVKPTPI_					0	0	0		BSN|p.P2901Lfs*27|1|0.18|ENSG00000164061|chr3:49660542-49660542|C/-|frameshift_variant;ENSG00000164061|ENST00000296452|BSN	BSN|p.P2901Lfs*27|1|0.18|ENSG00000164061|chr3:49660542-49660542|C/-|frameshift_variant	BSN|p.P2901Lfs*27|1|0.18|ENSG00000164061|chr3:49660542-49660542|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	491.8060607910156	2	491.805834	981.597115	-0.58237	-0.00028641	0.39596	0.00019474	-0.18641	-9.1676E-05	491.8059066811213	50.582	1.7337	47.788	47.331	49.065	-2.794					87	34	4	0	0	0	0.13482	1	3275	3275		87.754	0	1	434780			51677	162	42787	42818	55973	55973					0.10558039576847023
RTAVPEFRGL	10	Unmodified	_RTAVPEFRGL_					0	0	0		chr3:129268620-129271779|145|21.7|0.01|10.98|+|2|COPG1,None|1	chr3:129268620-129271779|145|21.7|0.01|10.98|+|2|COPG1,None|1	chr3:129268620-129271779|145|21.7|0.01|10.98|+|2|COPG1,None|1	MULTI-MSMS	OvCa99_classI_Rep5	1	573.326171875	2	573.324922	1144.63529	1.0214	0.00058562	-3.0851	-0.0017687	-2.0636	-0.0011831	573.3230447646893	150.13	1.1006	150.13	149.84	150.94	0					44	21	3	0	0	0	0.67987	1	17620	17620		32.751	1.1163	1	205480			51678	472	42788	42819	55974	55974					0.06875925491522139
RTAVPSFLTK	10	Unmodified	_RTAVPSFLTK_					0	0	0		nc|ENSG00000122068|Q96QD9-3|FYTTD1;nc|ENSG00000122068|Q96QD9-2|FYTTD1;ENSG00000122068|ENST00000241502|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	MULTI-MSMS	OvCa9_classI_Rep2	2	560.3284912109375	2	560.329673	1118.64479	0.11646	6.5258E-05	-0.74984	-0.00042016	-0.63337	-0.0003549	560.3291056440938	73.695	1.4179	71.295	70.949	72.367	-2.3999					75	26	4	0	0	0	0.11648	3	6013	6013;6019;6025		109.44	17.444	1	513890			51679	3516	42789	42820	55975;55976;55977	55975					0.09021693777026485
RTAVPSFLTK	10	Unmodified	_RTAVPSFLTK_					0	0	0		nc|ENSG00000122068|Q96QD9-3|FYTTD1;nc|ENSG00000122068|Q96QD9-2|FYTTD1;ENSG00000122068|ENST00000241502|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	MULTI-MSMS	OvCa9_classI_Rep3	3	560.3292846679688	2	560.329673	1118.64479	-0.53923	-0.00030215	-0.15487	-8.6781E-05	-0.69411	-0.00038893	560.3294768954069	73.803	0.99196	71.315	71.024	72.016	-2.4873					59	19	4	0	0	0	0.05917	5	3615	3615;3618;3625;3631;3637		125.68	31.585	1	769920			51680	3516	42789	42820	55978;55979;55980;55981;55982	55978					0.09021693777026485
RTAVPSFLTK	10	Unmodified	_RTAVPSFLTK_					0	0	0		nc|ENSG00000122068|Q96QD9-3|FYTTD1;nc|ENSG00000122068|Q96QD9-2|FYTTD1;ENSG00000122068|ENST00000241502|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	nc|ENSG00000122068|Q96QD9-3|FYTTD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.3309936523438	2	560.329673	1118.64479	0.95812	0.00053686	-1.475	-0.0008265	-0.5169	-0.00028964	560.3287234755392	74.884	0.77208	71.653	71.337	72.109	-3.2308					50	15	4	0	0	0	0.019275	2	5873	5873;5897		148.69	33.196	1	666350			51681	3516	42789	42820	55983;55984	55983					0.09021693777026485
RTDERIKQ	8	Unmodified	_RTDERIKQ_					0	0	0		ENSG00000088325|ENST00000300403|TPX2;nc|ENSG00000088325|Q9ULW0-2|TPX2	ENSG00000088325|ENST00000300403|TPX2	ENSG00000088325|ENST00000300403|TPX2	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.293701171875	2	523.291079	1044.56761	-0.84528	-0.00044233	1.9848	0.0010386	1.1395	0.00059628	523.2914501614295	65.301	1.8444	61.816	61.358	63.202	-3.4854					92	37	5	0	0	0	0.33046	1	4693	4693		101.6	2.9713	1	2760200			51682	1789	42790	42821	55985	55985					0.04710475560705163
RTDPLDRPT	9	Unmodified	_RTDPLDRPT_					0	0	0		ENSG00000153208|ENST00000295408|MERTK	ENSG00000153208|ENST00000295408|MERTK	ENSG00000153208|ENST00000295408|MERTK	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3056030273438	2	535.783087	1069.55162	-0.30602	-0.00016396	-0.11211	-6.0069E-05	-0.41813	-0.00022403	536.2825868476849	73.213	0.48596	73.213	72.954	73.44	0					19	11	2	0	0	0	0.027462	1	7139	7139		30.318	0	1	835590			51683	5667	42791	42822	55986	55986					0.01962769323813518
RTEEAIATDV	10	Unmodified	_RTEEAIATDV_					0	0	0			REV__CACNA1D-DNAH1|1|fusion;REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__CACNA1D-DNAH1|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	552.7808227539062	2	552.78021	1103.54587	-0.67705	-0.00037426	2.4661	0.0013632	1.7891	0.00098898	552.7817036292308	36.234	0.82249	36.234	35.753	36.575	0					31	17	3	0	0	0	0.48198	1	1898	1898		56.721	1.9447	1	383820	+		51684	15726;18203	42792	42823	55987	55987					-0.001763739785474172
RTEGGIALSIK	11	Unmodified	_RTEGGIALSIK_					0	0	0		ENST00000259523.10_1_8:128748409-128748475:+|nuORF	ENST00000259523.10_1_8:128748409-128748475:+|nuORF	ENST00000259523.10_1_8:128748409-128748475:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	572.8414306640625	2	572.837862	1143.66117	1.6526	0.00094665	3.7738	0.0021618	5.4264	0.0031084	572.8399822779188	126.26	1.2393	126.26	125.95	127.18	0					77	26	5	0	0	0	0.51772	1	14636	14636		52.167	0.97447	1	3668000			51685	9846	42793	42824	55988	55988					0.09508774943128628
RTEHSLHEP	9	Unmodified	_RTEHSLHEP_					0	0	0		OR51E1|p.Y63D|1|0.04|ENSG00000180785|chr11:4652713-4652713|T/G|missense_variant;OR51E1|p.I210Lfs*22|1|0.09|ENSG00000180785|chr11:4653154-4653154|A/-|frameshift_variant;ENSG00000180785|ENST00000396952|OR51E1	OR51E1|p.Y63D|1|0.04|ENSG00000180785|chr11:4652713-4652713|T/G|missense_variant	OR51E1|p.Y63D|1|0.04|ENSG00000180785|chr11:4652713-4652713|T/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.288818359375	2	553.272887	1104.53122	-0.24655	-0.00013641	-0.93246	-0.0005159	-1.179	-0.00065231	553.2721213125203	40.926	1.1873	40.926	40.666	41.853	0					30	16	4	0	0	0	0.027462	1	2530	2530		32.812	11.865	1	349290			51686	7887	42794	42825	55989	55989					-0.01686401335973642
RTERRMRALLL	11	Unmodified	_RTERRMRALLL_					0	0	0		ENST00000593605.1_3_19:40561332-40561410:-|nuORF	ENST00000593605.1_3_19:40561332-40561410:-|nuORF	ENST00000593605.1_3_19:40561332-40561410:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	472.2840881347656	3	472.285633	1413.83507	-5.4674	-0.0025822	1.4932	0.00070521	-3.9743	-0.001877	472.286486090062	156.6	1.7536	155.43	154.84	156.59	-1.1707					66	39	2	0	0	0	0.7252	1	13438	13438		12.957	3.3113	1	58221			51687	14156	42795	42826	55990	55990					0.14470657167635181
RTETQIAP	8	Unmodified	_RTETQIAP_					0	0	0			REV__ENST00000434972.1_1_X:5224570-5225104:-|nuORF	REV__ENST00000434972.1_1_X:5224570-5225104:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.2628173828125	2	458.248349	914.482145	0.058502	2.6808E-05	0.23572	0.00010802	0.29422	0.00013483	458.24838623876246	56.94	1.0557	56.94	56.34	57.396	0					31	24	2	0	0	0	0.028476	1	4748	4748		56.721	5.3856	1	472600	+		51688	25765	42796	42827	55991	55991					0.02148310375048368
RTFIESLKL	9	Unmodified	_RTFIESLKL_					0	0	0		ENSG00000198105|ENST00000395867|ZNF248	ENSG00000198105|ENST00000395867|ZNF248	ENSG00000198105|ENST00000395867|ZNF248	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8291015625	2	553.832049	1105.64954	-1.4967	-0.00082894	-2.0159	-0.0011164	-3.5126	-0.0019454	553.8307647537886	147.42	1.1434	145.98	145.43	146.58	-1.435					42	22	2	0	0	0	0.63422	1	14520	14520		27.882	1.1893	1	46629			51689	8785	42797	42828	55992	55992					0.10094577919790026
RTFIESLKL	9	Unmodified	_RTFIESLKL_					0	0	0		ENSG00000198105|ENST00000395867|ZNF248	ENSG00000198105|ENST00000395867|ZNF248	ENSG00000198105|ENST00000395867|ZNF248	MULTI-MATCH	OvCa9_classI_Rep2	2		2	553.832049	1105.64954	-1.7469	-0.00096746	-1.5835	-0.00087698	-3.3303	-0.0018444	553.8309351852803	146.66	0.95016	146.44	146.12	147.07	-0.22697	0.28139	-0.00052206	NaN	27.882	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27376			51690	8785	42797	42828							0.10094577919790026
RTFIESLKL	9	Unmodified	_RTFIESLKL_					0	0	0		ENSG00000198105|ENST00000395867|ZNF248	ENSG00000198105|ENST00000395867|ZNF248	ENSG00000198105|ENST00000395867|ZNF248	MULTI-MATCH	OvCa9_classI_Rep3	3		2	553.832049	1105.64954	-4.1253	-0.0022847	0.6729	0.00037267	-3.4524	-0.0019121	553.8321618214928	147.01	1.3004	146.05	145.59	146.89	-0.95947	-0.10723	0.0019772	NaN	27.882	51	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34684			51691	8785	42797	42828							0.10094577919790026
RTFITVVK	8	Unmodified	_RTFITVVK_					0	0	0			REV__ENST00000476408.1_1_1:111422872-111441814:+|nuORF	REV__ENST00000476408.1_1_1:111422872-111441814:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.3025817871094	2	482.302927	962.591301	0.49379	0.00023815	-3.8853	-0.0018739	-3.3915	-0.0016357	482.3009570429579	31.881	1.163	29.186	28.84	30.003	-2.6954					55	37	2	0	0	0	0.75208	1	739	739		17.365	0	1	14793	+		51692	26372	42798	42829	55993	55993					0.10850941065166353
RTFPFSLQY	9	Unmodified	_RTFPFSLQY_					0	0	0		ENSG00000171150|ENST00000394861|SOCS5	ENSG00000171150|ENST00000394861|SOCS5	ENSG00000171150|ENST00000394861|SOCS5	MULTI-MSMS	OvCa9_classI_Rep2	2	579.7999877929688	2	579.800749	1157.58694	-1.1369	-0.00065917	1.4844	0.00086064	0.34749	0.00020148	579.8012495258611	115.9	1.3361	115.78	115.34	116.68	-0.11777					76	26	4	0	0	0	0.1804	4	11058	11058;11062;11069;11074		79.713	13.61	1	168270			51693	7176	42799	42830	55994;55995;55996;55997	55994					0.01445431851630019
RTFPFSLQY	9	Unmodified	_RTFPFSLQY_					0	0	0		ENSG00000171150|ENST00000394861|SOCS5	ENSG00000171150|ENST00000394861|SOCS5	ENSG00000171150|ENST00000394861|SOCS5	MULTI-MSMS	OvCa9_classI_Rep3	3	579.8012084960938	2	579.800749	1157.58694	-1.7592	-0.00102	1.9052	0.0011046	0.14597	8.4636E-05	579.8015396204619	116.9	1.1888	115.87	115.5	116.69	-1.0324					71	23	4	0	0	0	0.23241	3	8748	8748;8754;8762		70.816	28.42	1	175950			51694	7176	42799	42830	55998;55999;56000	55998					0.01445431851630019
RTFPFSLQY	9	Unmodified	_RTFPFSLQY_					0	0	0		ENSG00000171150|ENST00000394861|SOCS5	ENSG00000171150|ENST00000394861|SOCS5	ENSG00000171150|ENST00000394861|SOCS5	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	579.800749	1157.58694	-1.0213	-0.00059217	1.0052	0.00058282	-0.016132	-9.3534E-06	579.8010715727274	117.1	1.3106	115.74	115.46	116.77	-1.3645	-0.057879	-0.00061477	NaN	79.713	64	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221810			51695	7176	42799	42830							0.01445431851630019
RTFRGPKPQ	9	Unmodified	_RTFRGPKPQ_					0	0	0		nc|ENSG00000289762|P0DQW1|SMIM46;ENST00000536649.5_1_19:14223138-14223288:-|nuORF	nc|ENSG00000289762|P0DQW1|SMIM46	nc|ENSG00000289762|P0DQW1|SMIM46	MSMS	OvCa9_classI_Rep2	2	543.811767578125	2	543.811982	1085.60941	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.388	1	24.678	24.178	25.178	-2.7097								0	0	0	0.19941	1	466	466		26.693	1.1189	1				51696	13392	42800	42831	56001	56001					0.07003076039904954
RTFSLFQQL	9	Unmodified	_RTFSLFQQL_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	OvCa9_classI_Rep2	2	570.3134765625	2	570.314023	1138.61349	-2.0744	-0.0011831	1.9924	0.0011363	-0.082046	-4.6792E-05	570.3150286208479	118.48	1.4346	118.33	118.04	119.47	-0.14755					71	28	4	0	0	0	0.046778	5	11387	11369;11374;11381;11387;11394		120.87	19.268	1	390250			51697	3094	42801	42832	56002;56003;56004;56005;56006	56005					0.04973120742943138
RTFSLFQQL	9	Unmodified	_RTFSLFQQL_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	OvCa9_classI_Rep3	3	570.3135375976562	2	570.314023	1138.61349	0.36855	0.00021019	-0.78912	-0.00045005	-0.42058	-0.00023986	570.3134037814037	119.58	1.3779	118.55	118.23	119.61	-1.0271					79	27	4	0	0	0	0.034473	7	9088	9072;9076;9082;9088;9095;9102;9109		131.62	24.933	1	434500			51698	3094	42801	42832	56007;56008;56009;56010;56011;56012;56013	56010					0.04973120742943138
RTFSLFQQL	9	Unmodified	_RTFSLFQQL_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	570.3134765625	2	570.314023	1138.61349	-1.1735	-0.00066925	0.97916	0.00055843	-0.19432	-0.00011082	570.3143754994007	119.79	1.3582	118.44	118.14	119.5	-1.3444					67	25	4	0	0	0	0.13326	3	11283	11249;11271;11283		88.177	1.0018	1	393950			51699	3094	42801	42832	56014;56015;56016	56016					0.04973120742943138
RTFYRAAF	8	Unmodified	_RTFYRAAF_					0	0	0			REV__nc|ENSG00000128805|Q7Z5H3-5|ARHGAP22	REV__nc|ENSG00000128805|Q7Z5H3-5|ARHGAP22	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7938232421875	2	516.274701	1030.53485	-0.15611	-8.0594E-05	3.7033	0.0019119	3.5472	0.0018313	516.7767703725505	78.565	1.0992	75.789	74.915	76.014	-2.7752					27	22	2	0	0	0	0.028476	1	6266	6266		24.203	1.1603	1	43384	+		51700	28841	42802	42833	56017	56017					0.020803132284981984
RTGGDWLL	8	Unmodified	_RTGGDWLL_					0	0	0			REV__nc|ENSG00000197558|A2VEC9|SSPOP	REV__nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.75946044921875	2	459.245609	916.476666	-0.022308	-1.0245E-05	1.5703	0.00072113	1.548	0.00071089	459.24599434124355	59.483	1.0862	56.091	55.553	56.639	-3.392					31	21	2	0	0	0	0.028476	1	3944	3944		34.173	2.2177	1	36975	+		51701	29083	42803	42834	56018	56018					0.015086315832377295
RTGKINLLI	9	Unmodified	_RTGKINLLI_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-MSMS	OvCa99_classI_Rep5	1	514.3360595703125	2	514.334759	1026.65496	1.3071	0.00067229	0.76161	0.00039172	2.0687	0.001064	514.335110773216	78.959	0.87572	78.959	78.709	79.585	0					52	21	4	0	0	0	0.13504	2	8045	8016;8045		87.696	13.18	1	12465000			51702	3077	42804	42835	56019;56020	56020					0.14270301502278926
RTGPLVRSLH	10	Unmodified	_RTGPLVRSLH_					0	0	0			REV__ENST00000560221.1_1_15:99190394-99190574:-|nuORF	REV__ENST00000560221.1_1_15:99190394-99190574:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	568.3387451171875	2	568.338364	1134.66217	0.026097	1.4832E-05	-0.28559	-0.00016231	-0.25949	-0.00014748	568.3380321849753	46.961	0.83234	46.961	46.719	47.551	0					52	18	4	0	0	0	0.37436	1	3348	3348		71.877	10.906	1	1409500	+		51703	27612	42805	42836	56021	56021					0.10023034102709971
RTGPPMGSRF	10	Unmodified	_RTGPPMGSRF_					0	0	0		nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.2836303710938	2	553.2822	1104.54985	-0.80074	-0.00044303	-0.31901	-0.0001765	-1.1197	-0.00061953	553.2825223850615	54.727	1.9925	51.48	50.722	52.715	-3.2474					113	38	5	0	0	0	0.5635	2	3381	3381;3393		46.457	5.6786	1	383560			51704	2570	42806	42837	56022;56023	56022					0.0017543703420415113
RTGPPMGSRF	10	Unmodified	_RTGPPMGSRF_					0	0	0		nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	MULTI-MATCH	OvCa9_classI_Rep2	2		2	553.2822	1104.54985	-0.37155	-0.00020557	-1.037	-0.00057377	-1.4086	-0.00077934	553.2821536009264	54.368	1.6469	51.554	50.925	52.572	-2.8139	0.037187	-0.00042082	NaN	46.457	84	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123970			51705	2570	42806	42837							0.0017543703420415113
RTHLRAQQ	8	Unmodified	_RTHLRAQQ_					0	0	0			REV__nc|ENSG00000196218|P21817-3|RYR1	REV__nc|ENSG00000196218|P21817-3|RYR1	MULTI-MSMS	OvCa9_classI_Rep2	2	505.2864990234375	2	505.286131	1008.55771	0.38886	0.00019649	2.0268	0.0010241	2.4157	0.0012206	505.28705002705914	30.208	1.1833	27.498	27.31	28.494	-2.7097					60	23	4	0	0	0	0.73205	1	859	859		35.618	8.9254	1	447770	+		51706	22801	42807	42838	56024	56024					0.05377332345983632
RTHTGTKPF	9	Unmodified	_RTHTGTKPF_					0	0	0		ENSG00000198040|ENST00000539354|ZNF84	ENSG00000198040|ENST00000539354|ZNF84	ENSG00000198040|ENST00000539354|ZNF84	MULTI-MSMS	OvCa99_classI_Rep5	1	522.7808227539062	2	522.78289	1043.55123	-1.2669	-0.00066232	-2.0837	-0.0010893	-3.3507	-0.0017517	522.78126421788	26.613	0.75035	26.613	26.292	27.043	0					31	14	4	0	0	0	0.53483	1	712	712		39.253	10.103	1	241070			51707	8775	42808	42839	56025	56025					0.031193943946163927
RTHTLILAL	9	Unmodified	_RTHTLILAL_					0	0	0			REV__nc|ENSG00000146414|Q149N8-4|SHPRH	REV__nc|ENSG00000146414|Q149N8-4|SHPRH	MULTI-MSMS	OvCa9_classI_Rep2	2	519.32568359375	2	519.326934	1036.63931	0.91528	0.00047533	-0.11424	-5.9329E-05	0.80104	0.000416	519.3263854293617	112.97	1.2349	112.84	112.62	113.86	-0.12174					63	24	3	0	0	0	0.16524	2	10708	10708;10727		82.305	10.428	1	264040	+		51708	20017	42809	42840	56026;56027	56026					0.12246014985225884
RTHTLILAL	9	Unmodified	_RTHTLILAL_					0	0	0			REV__nc|ENSG00000146414|Q149N8-4|SHPRH	REV__nc|ENSG00000146414|Q149N8-4|SHPRH	MULTI-MSMS	OvCa9_classI_Rep3	3	519.326416015625	2	519.326934	1036.63931	0.66301	0.00034432	0.14394	7.475E-05	0.80694	0.00041907	519.3265708894658	114.02	1.3609	112.96	112.68	114.04	-1.055					61	26	3	0	0	0	0.33652	1	8425	8425		58.782	3.2778	1	324950	+		51709	20017	42809	42840	56028	56028					0.12246014985225884
RTHTLILAL	9	Unmodified	_RTHTLILAL_					0	0	0			REV__nc|ENSG00000146414|Q149N8-4|SHPRH	REV__nc|ENSG00000146414|Q149N8-4|SHPRH	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.326171875	2	519.326934	1036.63931	0.30532	0.00015856	0.68552	0.00035601	0.99084	0.00051457	519.3267299350402	114.41	1.7356	113.01	112.73	114.46	-1.3977					69	33	3	0	0	0	0.21395	2	10625	10625;10634		73.975	2.679	1	315520	+		51710	20017	42809	42840	56029;56030	56029					0.12246014985225884
RTIAERLL	8	Unmodified	_RTIAERLL_					0	0	0			REV__ENSG00000160883|ENST00000292432|HK3	REV__ENSG00000160883|ENST00000292432|HK3	MULTI-MSMS	OvCa9_classI_Rep3	3	486.30499267578125	2	486.303458	970.592364	0.78572	0.0003821	2.8872	0.0014041	3.673	0.0017862	486.30477333878326	121.54	2.2543	120.51	120.01	122.27	-1.0286					108	42	4	0	0	0	0.7549	1	9348	9348		24.203	1.1603	1	892460	+		51711	20679	42810	42841	56031	56031					0.10589155434081476
RTIDCVHP	8	Unmodified	_RTIDCVHP_					0	0	0			REV__ENSG00000227124|ENST00000652011|ZNF717	REV__ENSG00000227124|ENST00000652011|ZNF717	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.2782897949219	2	470.737094	939.459635	-0.097221	-4.5765E-05	1.3013	0.00061257	1.2041	0.0005668	470.7370280954916	35.65	0.64447	35.65	35.52	36.164	0					17	13	2	0	0	0	0.028476	1	1856	1856		50.025	33.551	1	56561	+		51712	23374	42811	42842	56032	56032					-0.012516122942315633
RTIGVITKL	9	Unmodified	_RTIGVITKL_					0	0	0		nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3;DNM1|p.M272Tfs*25|1|0.31|ENSG00000106976|chr9:128220306-128220307|-/CCCAGCACTTTGGGAGGCCAAGCCGGGAGGAT|frameshift_variant;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1	nc|ENSG00000079805|P50570-3|DNM2	nc|ENSG00000079805|P50570-3|DNM2	MULTI-MSMS	OvCa9_classI_Rep2	2	500.82879638671875	2	500.829309	999.644065	-0.88449	-0.00044298	0.10407	5.212E-05	-0.78042	-0.00039086	500.8292980614921	73.918	1.8817	71.946	71.587	73.469	-1.9711					81	35	4	0	0	0	0.037924	3	6035	6029;6035;6041		128.6	16.191	1	955280			51713	1621	42812	42843	56033;56034;56035	56034					0.14422899127964683
RTIGVITKL	9	Unmodified	_RTIGVITKL_					0	0	0		nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3;DNM1|p.M272Tfs*25|1|0.31|ENSG00000106976|chr9:128220306-128220307|-/CCCAGCACTTTGGGAGGCCAAGCCGGGAGGAT|frameshift_variant;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1	nc|ENSG00000079805|P50570-3|DNM2	nc|ENSG00000079805|P50570-3|DNM2	MULTI-MSMS	OvCa9_classI_Rep3	3	500.8289489746094	2	500.829309	999.644065	-0.61458	-0.0003078	0.10073	5.0448E-05	-0.51385	-0.00025735	500.8293183218035	74.084	1.9767	71.596	71.324	73.301	-2.4873					112	39	4	0	0	0	0.051592	4	3644	3644;3649;3660;3666		117.81	16.21	1	1488900			51714	1621	42812	42843	56036;56037;56038;56039	56036					0.14422899127964683
RTIGVITKL	9	Unmodified	_RTIGVITKL_					0	0	0		nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3;DNM1|p.M272Tfs*25|1|0.31|ENSG00000106976|chr9:128220306-128220307|-/CCCAGCACTTTGGGAGGCCAAGCCGGGAGGAT|frameshift_variant;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1	nc|ENSG00000079805|P50570-3|DNM2	nc|ENSG00000079805|P50570-3|DNM2	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.83001708984375	2	500.829309	999.644065	-0.35035	-0.00017547	-0.45612	-0.00022844	-0.80647	-0.0004039	500.8289582081238	75.17	1.489	71.939	71.678	73.167	-3.2308					75	30	4	0	0	0	0.060996	3	5900	5900;5911;5939		112.41	16.321	1	1140900			51715	1621	42812	42843	56040;56041;56042	56040					0.14422899127964683
RTILAVHVM	9	Unmodified	_RTILAVHVM_					0	0	0		ENST00000545932.5_1_12:108962740-108962866:+|nuORF	ENST00000545932.5_1_12:108962740-108962866:+|nuORF	ENST00000545932.5_1_12:108962740-108962866:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	520.3046264648438	2	520.307687	1038.60082	-4.8818	-0.0025401	0.14268	7.4237E-05	-4.7391	-0.0024658	520.3076056055337	152.59	1.7718	151.62	150.74	152.51	-0.97301					83	35	4	0	0	0	0.6653	1	13057	13057		24.203	0	1	460690			51716	13527	42813	42844	56043	56043					0.08306386079061667
RTILRYIKV	9	Unmodified	_RTILRYIKV_					0	0	0			REV__CHD7|p.S2860Kfs*9|1|0.3|ENSG00000171316|chr8:60865513-60865514|-/A|frameshift_variant	REV__CHD7|p.S2860Kfs*9|1|0.3|ENSG00000171316|chr8:60865513-60865514|-/A|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	580.7529296875	2	581.376958	1160.73936	-1.2986	-0.00075497	1.0736	0.00062416	-0.22501	-0.00013082	581.377388762158	94.89	1.1519	92.422	92.11	93.262	-2.4685					51	22	3	0	0	0	0.027462	1	8352	8352		20.947	0	1	101730	+		51717	15789	42814	42845	56044	56044					0.16542252319004547
RTILTNIRL	9	Unmodified	_RTILTNIRL_					0	0	0			REV__tr|A0A553SK84|A0A553SK84_NIACIProbableseptumsite-determiningproteinMinCOS=NialliacirculansOX=1397GN=minCPE=3SV=1	REV__tr|A0A553SK84|A0A553SK84_NIACIProbableseptumsite-determiningproteinMinCOS=NialliacirculansOX=1397GN=minCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	550.3507690429688	2	550.35094	1098.68733	0.35656	0.00019624	-0.53554	-0.00029473	-0.17897	-9.8497E-05	550.3505114476876	31.822	1.2363	29.112	28.789	30.025	-2.7097					67	24	4	0	0	0	0.61365	1	1050	1050		30.318	2.4355	1	380910	+		51718	30093	42815	42846	56045	56045					0.1419308890526736
RTIRKGTKAPQ	11	Unmodified	_RTIRKGTKAPQ_					0	0	0		ENST00000396387.2_1_22:42503789-42504386:-|nuORF	ENST00000396387.2_1_22:42503789-42504386:-|nuORF	ENST00000396387.2_1_22:42503789-42504386:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	628.3820190429688	2	628.383303	1254.75205	-4.0512	-0.0025457	2.8064	0.0017635	-1.2447	-0.00078217	628.3849132400738	150.53	4.7174	149.58	148	152.71	-0.95647					178	94	2	0	0	0	0.71498	1	12896	12896		24.519	4.5224	1	419100			51719	11314	42816	42847	56046	56046					0.1348666371127365
RTISGIPISIQ	11	Unmodified	_RTISGIPISIQ_					0	0	0		tr|A0A553SH58|A0A553SH58_NIACIYbbR-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12195PE=4SV=1	tr|A0A553SH58|A0A553SH58_NIACIYbbR-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12195PE=4SV=1	tr|A0A553SH58|A0A553SH58_NIACIYbbR-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12195PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	593.8202514648438	2	592.853512	1183.69247	-0.38837	-0.00023025	-0.54853	-0.0003252	-0.9369	-0.00055545	592.8532735143177	93.509	0.45709	91.002	90.714	91.171	-2.5072					13	9	2	0	0	0	0.023097	1	8126	8126		96.034	18.716	1	45059			51720	33240	42817	42848	56047	56047					0.10797347977245408
RTISGIPISIQ	11	Unmodified	_RTISGIPISIQ_					0	0	0		tr|A0A553SH58|A0A553SH58_NIACIYbbR-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12195PE=4SV=1	tr|A0A553SH58|A0A553SH58_NIACIYbbR-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12195PE=4SV=1	tr|A0A553SH58|A0A553SH58_NIACIYbbR-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12195PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	592.853512	1183.69247	0.30494	0.00018079	-0.89991	-0.00053351	-0.59496	-0.00035273	592.8529604342385	91.929	0.62966	90.693	90.484	91.114	-1.2355	-0.20253	-0.00088807	NaN	96.034	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41247			51721	33240	42817	42848							0.10797347977245408
RTISGIPISIQ	11	Unmodified	_RTISGIPISIQ_					0	0	0		tr|A0A553SH58|A0A553SH58_NIACIYbbR-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12195PE=4SV=1	tr|A0A553SH58|A0A553SH58_NIACIYbbR-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12195PE=4SV=1	tr|A0A553SH58|A0A553SH58_NIACIYbbR-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12195PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	592.853512	1183.69247	-1.5558	-0.00092237	0.91394	0.00054183	-0.64188	-0.00038054	592.8540908991675	92.953	1.2417	90.992	90.744	91.986	-1.9617	0.096027	0.0012626	NaN	96.034	45	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58036			51722	33240	42817	42848							0.10797347977245408
RTISVGQVR	9	Unmodified	_RTISVGQVR_					0	0	0			REV__ENSG00000134070|ENST00000256458|IRAK2	REV__ENSG00000134070|ENST00000256458|IRAK2	MULTI-MSMS	OvCa99_classI_Rep5	1	508.302978515625	2	508.30399	1014.59343	-0.5572	-0.00028323	-1.2979	-0.00065975	-1.8551	-0.00094297	508.3034475130011	37.918	1.5288	37.918	37.668	39.196	0					107	33	5	0	0	0	0.16562	1	2122	2122		82.241	2.5279	1	42182000	+		51723	19172	42818	42849	56048	56048					0.08671369803005291
RTIVEKKSYK	10	Unmodified	_RTIVEKKSYK_					0	0	0		tr|A0A553SQX3|A0A553SQX3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07385PE=4SV=1	tr|A0A553SQX3|A0A553SQX3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07385PE=4SV=1	tr|A0A553SQX3|A0A553SQX3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07385PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	417.9065856933594	3	417.918834	1250.73467	-0.68078	-0.00028451	-3.4059	-0.0014234	-4.0867	-0.0017079	417.91741745157566	51.472	0.65393	48.298	48.072	48.726	-3.1734					19	12	2	0	0	0	0.026887	1	3032	3032		90.149	35.426	1	97320			51724	34208	42819	42850	56049	56049					0.11933323385619587
RTKGSFSLCSK	11	Unmodified	_RTKGSFSLCSK_					0	0	0			REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|184|3|sense	REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|184|3|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	405.5511169433594	3	405.216774	1212.62849	0.87524	0.00035466	-3.0894	-0.0012519	-2.2141	-0.0008972	405.55074847276387	39.085	0.62685	39.085	38.836	39.463	0					34	13	4	0	0	0	0.6511	1	2269	2269		40.015	2.5072	1	672630	+		51725	28200	42820	42851	56050	56050					0.03068244548603616
RTKGTEKPKD	10	Unmodified	_RTKGTEKPKD_					0	0	0		ENSG00000186566|ENST00000591680|GPATCH8;nc|ENSG00000186566|Q9UKJ3-2|GPATCH8;GPATCH8|p.K1049Efs*3|1|0.13|ENSG00000186566|chr17:44398931-44398932|TT/-|frameshift_variant	ENSG00000186566|ENST00000591680|GPATCH8	ENSG00000186566|ENST00000591680|GPATCH8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	579.9774169921875	2	580.325119	1158.63569	-1.0938	-0.00063475	4.0787	0.002367	2.9849	0.0017322	580.3273911507266	106.04	1.3939	104.03	103.74	105.14	-2.0161					53	26	4	0	0	0	0.02676	1	9748	9748		41.427	8.6761	1	151810			51726	8347	42821	42852	56051	56051					0.0627130042068984
RTKIKRPN	8	Unmodified	_RTKIKRPN_					0	0	0			REV__nc|ENSG00000158195|Q9Y6W5-2|WASF2	REV__nc|ENSG00000158195|Q9Y6W5-2|WASF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.27239990234375	2	506.82235	1011.63015	-1.1464	-0.00058103	0.38106	0.00019313	-0.76535	-0.0003879	506.82264717428166	34.563	0.51256	34.563	34.351	34.864	0					23	10	3	0	0	0	0.028476	1	1705	1705		26.693	10.22	1	409430	+		51727	20556	42822	42853	56052	56052					0.12479666419540081
RTKKIPTV	8	Unmodified	_RTKKIPTV_					0	0	0			REV__WNK3|p.L1380Ffs*18|1|0.04|ENSG00000196632|chrX:54237426-54237427|-/G|frameshift_variant	REV__WNK3|p.L1380Ffs*18|1|0.04|ENSG00000196632|chrX:54237426-54237427|-/G|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.5755920410156	2	471.808377	941.6022	-0.058207	-2.7462E-05	0.012817	6.047E-06	-0.04539	-2.1415E-05	471.8082571184602	58.754	0.73803	58.754	58.194	58.932	0					20	17	2	0	0	0	0.028476	1	4973	4973		19.104	6.2918	1	311010	+		51728	22851	42823	42854	56053	56053					0.12906343439465218
RTKKVGIVGK	10	Unmodified	_RTKKVGIVGK_					0	0	0		ENST00000487233.1_1_2:217363570-217364184:+|nuORF;ENST00000490649.1_1_2:217363570-217364755:+|nuORF;ENSG00000197756|ENST00000491306|RPL37A;ENST00000478153.1_1_2:217363923-217364755:+|nuORF	ENST00000487233.1_1_2:217363570-217364184:+|nuORF	ENST00000487233.1_1_2:217363570-217364184:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	543.3609619140625	2	543.361308	1084.70806	-0.87734	-0.00047672	0.68604	0.00037277	-0.1913	-0.00010395	543.3615318559256	32.393	0.98863	29.683	29.431	30.42	-2.7097					49	19	3	0	0	0	0.43433	3	1072	1066;1072;1078		63.534	9.5257	1	167070			51729	8745	42824	42855	56054;56055;56056	56055					0.1690967928493592
RTKKVGIVGK	10	Unmodified	_RTKKVGIVGK_					0	0	0		ENST00000487233.1_1_2:217363570-217364184:+|nuORF;ENST00000490649.1_1_2:217363570-217364755:+|nuORF;ENSG00000197756|ENST00000491306|RPL37A;ENST00000478153.1_1_2:217363923-217364755:+|nuORF	ENST00000487233.1_1_2:217363570-217364184:+|nuORF	ENST00000487233.1_1_2:217363570-217364184:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.3613891601562	2	543.361308	1084.70806	-0.74826	-0.00040658	0.78081	0.00042426	0.032546	1.7684E-05	543.3616145864607	20.908	1.2121	19.569	19.311	20.523	-1.3386					60	24	3	0	0	0	0.39718	1	107	107		68.846	10.064	1	288780			51730	8745	42824	42855	56057	56057					0.1690967928493592
RTKKWSYYY	9	Unmodified	_RTKKWSYYY_					0	0	0			REV__nc|ENSG00000117625|Q9P2K3|RCOR3;REV__ENSG00000167771|ENST00000301459|RCOR2	REV__nc|ENSG00000117625|Q9P2K3|RCOR3	MULTI-SECPEP	OvCa99_classI_Rep5	1	431.89111328125	3	432.224146	1293.65061	-0.18061	-7.8064E-05	3.4123	0.0014749	3.2317	0.0013968	432.2255694077658	38.325	1.0302	38.325	37.851	38.882	0					36	22	3	0	0	0	0.027462	1	2164	2164		45.022	14.453	1	406020	+		51731	18362;21308	42825	42856	56058	56058					0.015527922887031309
RTKLRFTK	8	Unmodified	_RTKLRFTK_					0	0	0			REV__nc|ENSG00000101224|P30305-3|CDC25B	REV__nc|ENSG00000101224|P30305-3|CDC25B	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.8036499023438	2	525.33255	1048.65055	-0.40441	-0.00021245	-0.61166	-0.00032133	-1.0161	-0.00053378	525.3324030587396	80.226	1.5276	77.886	77.36	78.888	-2.3399					61	29	3	0	0	0	0.028476	1	4409	4409		42.396	8.8806	1	129070	+		51732	17484	42826	42857	56059	56059					0.12816837079344623
RTKNKKKF	8	Unmodified	_RTKNKKKF_					0	0	0			REV__ENST00000344756.8_1_7:155100385-155100712:+|nuORF	REV__ENST00000344756.8_1_7:155100385-155100712:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.802490234375	2	525.33255	1048.65055	0.24414	0.00012826	-0.99204	-0.00052115	-0.7479	-0.0003929	525.3318644946519	79.335	1.2748	77.595	77.249	78.524	-1.7398					47	24	3	0	0	0	0.028476	1	6712	6712		31.955	2.8053	1	130640	+		51733	24685	42827	42858	56060	56060					0.1281683707936736
RTKNKKKF	8	Unmodified	_RTKNKKKF_					0	0	0			REV__ENST00000344756.8_1_7:155100385-155100712:+|nuORF	REV__ENST00000344756.8_1_7:155100385-155100712:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.8033447265625	2	525.33255	1048.65055	-1.3116	-0.00068905	0.089547	4.7042E-05	-1.2221	-0.000642	525.3326923103826	80.521	1.1247	77.811	77.516	78.641	-2.7106					48	22	3	0	0	0	0.028476	1	6650	6650		26.796	0	1	130190	+		51734	24685	42827	42858	56061	56061					0.1281683707936736
RTKQKRLHVL	10	Unmodified	_RTKQKRLHVL_					0	0	0			REV__nc|ENSG00000083937|Q9UQN3-2|CHMP2B	REV__nc|ENSG00000083937|Q9UQN3-2|CHMP2B	MULTI-MSMS	OvCa9_classI_Rep3	3	426.9427490234375	3	426.942084	1277.80442	0.74077	0.00031627	-1.3177	-0.00056258	-0.57694	-0.00024632	426.94149785984115	79.39	2.4757	77.05	76.514	78.99	-2.3399					139	48	4	0	0	0	0.69073	1	4281	4281		31.53	5.4664	1	472050	+		51735	17114	42828	42859	56062	56062					0.17663246844881542
RTKQKRLHVL	10	Unmodified	_RTKQKRLHVL_					0	0	0			REV__nc|ENSG00000083937|Q9UQN3-2|CHMP2B	REV__nc|ENSG00000083937|Q9UQN3-2|CHMP2B	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	426.942084	1277.80442	-0.15882	-6.7808E-05	-0.05281	-2.2547E-05	-0.21163	-9.0354E-05	426.9418851870724	79.729	2.0857	76.978	76.514	78.6	-2.7514	-0.0361	0.0013813	NaN	31.53	116	42	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	521400	+		51736	17114	42828	42859							0.17663246844881542
RTKQRIQPQK	10	Unmodified	_RTKQRIQPQK_					0	0	0		nc|ENSG00000012048|P38398-8|BRCA1;nc|ENSG00000012048|P38398-4|BRCA1;ENSG00000012048|ENST00000357654|BRCA1;nc|ENSG00000012048|P38398-7|BRCA1;BRCA1|p.Y655Vfs*18|1|0.66|ENSG00000012048|chr17:43093569-43093570|-/T|frameshift_variant;nc|ENSG00000012048|P38398-5|BRCA1;BRCA1|p.D749Vfs*4|1|0.8|ENSG00000012048|chr17:43093285-43093285|T/-|frameshift_variant;nc|ENSG00000012048|P38398-3|BRCA1;BRCA1|p.S1139Ffs*5|1|0.08|ENSG00000012048|chr17:43092116-43092117|-/TATGATTAAA|frameshift_variant;BRCA1|p.R1188Efs*3|1|0.85|ENSG00000012048|chr17:43091968-43091969|CT/-|frameshift_variant;BRCA1|p.N1265Kfs*4|1|0.89|ENSG00000012048|chr17:43091736-43091737|-/TT|frameshift_variant;BRCA1|p.N1268Tfs*3|1|0.45|ENSG00000012048|chr17:43091716-43091728|TTACTGCAGTCAT/-|frameshift_variant;BRCA1|p.G1710Efs*4|1|0.39|ENSG00000012048|chr17:43063897-43063897|C/-|frameshift_variant;BRCA1|p.D295Tfs*3|1|0.44|ENSG00000012048|chr17:43094649-43094649|T/-|frameshift_variant;BRCA1|p.C328*|1|0.86|ENSG00000012048|chr17:43094549-43094550|AT/-|frameshift_variant;nc|ENSG00000012048|P38398-6|BRCA1	nc|ENSG00000012048|P38398-8|BRCA1	nc|ENSG00000012048|P38398-8|BRCA1	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8854370117188	2	641.888752	1281.76295	-6.0651	-0.0038931	-3.5729	-0.0022934	-9.638	-0.0061865	641.8862554433606	156.14	0.75443	155.06	154.74	155.49	-1.073					34	19	2	0	0	0	0.83835	1	13433	13433		14.137	0	1	21909			51737	971	42829	42860	56063	56063					0.13334066085553786
RTKRIYSYKKH	11	Unmodified	_RTKRIYSYKKH_					0	0	0			REV__ENST00000301453.7_1_11:63753886-63764121:+|nuORF	REV__ENST00000301453.7_1_11:63753886-63764121:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.7879333496094	3	493.956282	1478.84702	-0.81612	-0.00040313	-2.2997	-0.0011359	-3.1158	-0.0015391	493.9550580388366	54.597	1.1765	51.35	51.081	52.257	-3.2474					61	22	4	0	0	0	0.026277	1	3371	3371		12.957	7.2587	1	171720	+		51738	21307	42830	42861	56064	56064					0.12674597182422076
RTKVTRDF	8	Unmodified	_RTKVTRDF_					0	0	0		tr|A0A553SQG6|A0A553SQG6_NIACIGuanylatecyclasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07640PE=4SV=1	tr|A0A553SQG6|A0A553SQG6_NIACIGuanylatecyclasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07640PE=4SV=1	tr|A0A553SQG6|A0A553SQG6_NIACIGuanylatecyclasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07640PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.7728576660156	2	511.790715	1021.56688	-0.78402	-0.00040126	-0.58006	-0.00029687	-1.3641	-0.00069812	511.7902599325421	40.356	1.0449	37.402	37.213	38.257	-2.9541					32	19	3	0	0	0	0.028476	1	1715	1715		34.173	1.3601	1	53369			51739	34158	42831	42862	56065	56065					0.056956809116513796
RTKVTRDF	8	Unmodified	_RTKVTRDF_					0	0	0		tr|A0A553SQG6|A0A553SQG6_NIACIGuanylatecyclasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07640PE=4SV=1	tr|A0A553SQG6|A0A553SQG6_NIACIGuanylatecyclasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07640PE=4SV=1	tr|A0A553SQG6|A0A553SQG6_NIACIGuanylatecyclasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07640PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	511.790715	1021.56688	0.040756	2.0858E-05	1.6968	0.00086839	1.7375	0.00088925	511.7904126385594	40.452	0.78896	37.743	37.501	38.29	-2.7097	0.17036	0.0020522	NaN	34.173	19	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30327			51740	34158	42831	42862							0.056956809116513796
RTLCVHLGLLL	11	Unmodified	_RTLCVHLGLLL_					0	0	0		ENSG00000130826|ENST00000369550|DKC1;nc|ENSG00000130826|O60832-2|DKC1	ENSG00000130826|ENST00000369550|DKC1	ENSG00000130826|ENST00000369550|DKC1	MULTI-MSMS	OvCa9_classI_Rep3	3	619.3724365234375	2	619.376101	1236.73765	-5.649	-0.0034989	-1.2699	-0.00078657	-6.919	-0.0042854	619.3752552398936	159.28	1.2139	158.02	157.66	158.88	-1.267					65	23	4	0	0	0	0.72479	1	13764	13764		18.262	0	1	112740			51741	4020	42832	42863	56066	56066					0.1287487523877644
RTLDLPIYV	9	Unmodified	_RTLDLPIYV_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA;COPA|p.H613Tfs*3|1|0.05|ENSG00000122218|chr1:160298986-160298986|C/-|frameshift_variant	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.317138671875	2	545.318774	1088.623	-0.51372	-0.00028014	-3.2363	-0.0017648	-3.75	-0.002045	545.3169196404446	142.63	4.7541	141.19	139.73	144.49	-1.4427					172	91	2	0	0	0	0.59983	1	14029	14029		31.955	1.6371	1	155190			51742	3523	42833	42864	56067	56067					0.08222889028479585
RTLEIPAVVGL	11	Unmodified	_RTLEIPAVVGL_					0	0	0		tr|A0A7D6VQH6|A0A7D6VQH6_9CLOTPhosphoenolpyruvate-proteinphosphotransferaseOS=ClostridiumintestinaleOX=36845GN=ptsPPE=3SV=1	tr|A0A7D6VQH6|A0A7D6VQH6_9CLOTPhosphoenolpyruvate-proteinphosphotransferaseOS=ClostridiumintestinaleOX=36845GN=ptsPPE=3SV=1	tr|A0A7D6VQH6|A0A7D6VQH6_9CLOTPhosphoenolpyruvate-proteinphosphotransferaseOS=ClostridiumintestinaleOX=36845GN=ptsPPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3555297851562	2	584.358431	1166.70231	-1.7162	-0.0010029	-1.68	-0.00098173	-3.3962	-0.0019846	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.70142	1	14495	14495		29.17	2.1227	1	833330			51743	34849	42834	42865	56068	56068					0.1256253598260173
RTLEWRPR	8	Unmodified	_RTLEWRPR_					0	0	0		nc|ENSG00000106991|P17813-2|ENG;ENSG00000106991|ENST00000373203|ENG;ENG|p.T361Kfs*8|1|0.13|ENSG00000106991|chr9:127824356-127824356|G/-|frameshift_variant	nc|ENSG00000106991|P17813-2|ENG	nc|ENSG00000106991|P17813-2|ENG	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.3067626953125	2	557.317432	1112.62031	-0.54914	-0.00030605	1.3245	0.00073819	0.77539	0.00043214	557.316804191922	49.943	0.52084	49.943	49.635	50.156	0					16	11	2	0	0	0	0.028476	1	3762	3762		37.159	6.8414	1	86533			51744	2580	42835	42866	56069	56069					0.06850478414162353
RTLFRSRSK	9	Unmodified	_RTLFRSRSK_					0	0	0		XCR1|p.H300Rfs*28|1|0.14|ENSG00000173578|chr3:46021048-46021049|AT/-|frameshift_variant;ENSG00000173578|ENST00000309285|XCR1	XCR1|p.H300Rfs*28|1|0.14|ENSG00000173578|chr3:46021048-46021049|AT/-|frameshift_variant	XCR1|p.H300Rfs*28|1|0.14|ENSG00000173578|chr3:46021048-46021049|AT/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8433837890625	2	575.843813	1149.67307	-0.33973	-0.00019563	-0.25402	-0.00014628	-0.59375	-0.00034191	575.8433458482052	142.38	3.7668	140.93	139.05	142.82	-1.4532					179	72	3	0	0	0	0.68424	1	13997	13997		21.96	0	1	165140			51745	7392	42836	42867	56070	56070					0.10422436476983421
RTLHEVPA	8	Unmodified	_RTLHEVPA_					0	0	0			REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|69|2|sense	REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|69|2|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	461.7588195800781	2	461.758884	921.503215	-1.5521	-0.00071668	1.3905	0.00064206	-0.16158	-7.4611E-05	461.7594239038764	48.635	0.9375	45.528	45.296	46.233	-3.1077					47	17	3	0	0	0	0.7043	1	2702	2702		42.474	0	1	522860	+		51746	28217	42837	42868	56071	56071					0.039323204745642215
RTLIHLVY	8	Unmodified	_RTLIHLVY_					0	0	0			REV__ENSG00000135355|ENST00000369352|GJA10	REV__ENSG00000135355|ENST00000369352|GJA10	MULTI-MSMS	OvCa99_classI_Rep5	1	507.8056945800781	2	507.808377	1013.6022	0.16924	8.5941E-05	-4.3847	-0.0022266	-4.2154	-0.0021406	507.80609220628395	20.941	0.23787	20.941	20.823	21.061	0					9	4	3	0	0	0	0.73288	1	76	76		35.201	12.158	1	44653	+		51747	19278	42838	42869	56072	56072					0.09594343439471231
RTLIWRFL	8	Unmodified	_RTLIWRFL_					0	0	0			REV__nc|ENSG00000133392|P35749-4|MYH11	REV__nc|ENSG00000133392|P35749-4|MYH11	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.288818359375	2	552.837468	1103.66038	-0.25358	-0.00014019	-3.5074	-0.001939	-3.7609	-0.0020792	552.8353987299662	41.014	0.62163	41.014	40.754	41.375	0					36	13	4	0	0	0	0.028476	1	2530	2530		38.806	1.647	1	561160	+		51748	19142	42839	42870	56073	56073					0.11270025084763802
RTLKPQPQQ	9	Unmodified	_RTLKPQPQQ_					0	0	0		ENST00000527286.5_1_11:111789765-111796920:+|nuORF;ENST00000529012.1_1_11:111795026-111796920:+|nuORF;ENSG00000149300|ENST00000278601|C11orf52	ENST00000527286.5_1_11:111789765-111796920:+|nuORF	ENST00000527286.5_1_11:111789765-111796920:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.2734985351562	2	548.317097	1094.61964	-0.089437	-4.904E-05	-3.5082	-0.0019236	-3.5977	-0.0019727	548.3149740696423	71.698	0.49048	71.698	71.466	71.956	0					30	11	4	0	0	0	0.027403	1	6936	6936		79.713	8.4169	1	2400900			51749	13231	42840	42871	56074	56074					0.07611638974458401
RTLKRNGISPP	11	Unmodified	_RTLKRNGISPP_					0	0	0		ENST00000427391.1_1_X:130964423-130964573:-|nuORF	ENST00000427391.1_1_X:130964423-130964573:-|nuORF	ENST00000427391.1_1_X:130964423-130964573:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8687744140625	2	619.870028	1237.7255	-3.8587	-0.0023919	2.9348	0.0018192	-0.92393	-0.00057272	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.71048	1	15273	15273		26.063	2.5407	1	492670			51750	11754	42841	42872	56075	56075					0.11614974819940471
RTLKRNGISPP	11	Unmodified	_RTLKRNGISPP_					0	0	0		ENST00000427391.1_1_X:130964423-130964573:-|nuORF	ENST00000427391.1_1_X:130964423-130964573:-|nuORF	ENST00000427391.1_1_X:130964423-130964573:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.870361328125	2	619.870028	1237.7255	-3.1194	-0.0019336	2.0434	0.0012667	-1.076	-0.00066696	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.72324	2	14763	14763;14838		21.686	5.679	1	806750			51751	11754	42841	42872	56076;56077	56076					0.11614974819940471
RTLKTGIQ	8	Unmodified	_RTLKTGIQ_					0	0	0			REV__nc|ENSG00000112137|Q9C0D0-2|PHACTR1	REV__nc|ENSG00000112137|Q9C0D0-2|PHACTR1	MULTI-MSMS	OvCa9_classI_Rep2	2	458.7818908691406	2	458.782359	915.550165	-1.2943	-0.00059382	1.1634	0.00053377	-0.13089	-6.0052E-05	458.78281032572033	34.903	0.94068	32.193	31.959	32.9	-2.7097					33	18	2	0	0	0	0.60331	1	1379	1379		63.306	0	1	153160	+		51752	18077	42842	42873	56078	56078					0.08901180025713984
RTLLVHKVF	9	Unmodified	_RTLLVHKVF_					0	0	0		nc|ENSG00000101665|O15105-2|SMAD7;ENST00000545051.2_1_18:46447744-46469079:-|nuORF;nc|ENSG00000101665|O15105-3|SMAD7;ENSG00000101665|ENST00000262158|SMAD7	nc|ENSG00000101665|O15105-2|SMAD7	nc|ENSG00000101665|O15105-2|SMAD7	MULTI-MSMS	OvCa99_classI_Rep5	1	556.8502807617188	2	556.850576	1111.6866	-0.099846	-5.56E-05	-3.9357	-0.0021916	-4.0356	-0.0022472	556.8482113281652	50.86	0.77798	50.86	50.64	51.418	0					34	17	3	0	0	0	0.42676	1	3907	3907		49.442	1.7842	1	1755900			51753	2194	42843	42874	56079	56079					0.1352229425619953
RTLMKIQL	8	Unmodified	_RTLMKIQL_					0	0	0		nc|ENSG00000146414|Q149N8-4|SHPRH;ENSG00000146414|ENST00000275233|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	nc|ENSG00000146414|Q149N8-4|SHPRH	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.2696228027344	2	501.810062	1001.60557	-1.2686	-0.00063658	-2.6266	-0.001318	-3.8952	-0.0019546	501.8091045194301	93.153	0.65082	90.646	90.312	90.963	-2.5072					20	12	2	0	0	0	0.028476	1	8091	8091		42.396	1.618	1	27927			51754	5290	42844	42875	56080	56080					0.10483270221834573
RTLMKKAI	8	Unmodified	_RTLMKKAI_					0	0	0		ENST00000489790.1_1_6:107361268-107361310:+|nuORF	ENST00000489790.1_1_6:107361268-107361310:+|nuORF	ENST00000489790.1_1_6:107361268-107361310:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	480.80059814453125	2	480.80478	959.595007	-4.4906	-0.0021591	-3.3491	-0.0016103	-7.8397	-0.0037694	480.8030459689351	151.04	2.008	150.08	149.7	151.71	-0.95647					103	39	4	0	0	0	0.75241	1	12839	12839		25.45	1.2474	1	1013500			51755	12683	42845	42876	56081	56081					0.1135928756739304
RTLNSSTCCLT	11	Unmodified	_RTLNSSTCCLT_					0	0	0		ENST00000478241.6_2_12:56223797-56224400:+|nuORF	ENST00000478241.6_2_12:56223797-56224400:+|nuORF	ENST00000478241.6_2_12:56223797-56224400:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	599.3087768554688	2	599.781373	1197.54819	1.7253	0.0010348	-2.359	-0.0014149	-0.63367	-0.00038006	599.7798852235885	115.24	1.0752	115.24	114.84	115.91	0					46	21	4	0	0	0	0.025701	1	13119	13119		29.17	0	1	397140			51756	12491	42846	42877	56082	56082					-0.04267984836724281
RTLPFFRGL	9	Unmodified	_RTLPFFRGL_					0	0	0			REV__ENST00000587009.5_1_19:4446812-4447750:-|nuORF	REV__ENST00000587009.5_1_19:4446812-4447750:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8319702148438	2	553.827101	1105.63965	1.4062	0.00077877	3.9255	0.0021741	5.3317	0.0029528	553.8291816775361	139.45	3.0735	137.95	136.76	139.84	-1.4952					150	61	3	0	0	0	0.59259	2	13604	13604;13684		32.812	2.6225	1	110800	+		51757	27870	42847	42878	56083;56084	56083					0.09105434705088555
RTLPSPPPAL	10	Unmodified	_RTLPSPPPAL_					0	0	0			REV__ENSG00000035141|ENST00000430566|FAM136A	REV__ENSG00000035141|ENST00000430566|FAM136A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.8270263671875	2	524.811116	1047.60768	-5.7316	-0.003008	-0.88461	-0.00046425	-6.6162	-0.0034722	524.8114664037205	156.94	0.19519	155.39	155.26	155.45	-1.545					6	4	2	0	0	0	0.026849	1	15510	15510		49.442	0	1	7905.8	+		51758	16599	42848	42879	56085	56085					0.08578022231267823
RTLPVLLLY	9	Unmodified	_RTLPVLLLY_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-MSMS	OvCa9_classI_Rep3	3	544.34716796875	2	544.347335	1086.68012	0.25522	0.00013893	-0.24647	-0.00013416	0.0087488	4.7624E-06	544.3470145971799	130.64	2.2153	129.51	128.62	130.84	-1.1249					69	44	3	0	0	0	0.64427	1	10386	10386		26.693	2.4902	1	117100			51759	3125	42849	42880	56086	56086					0.1402435630486707
RTLQHIVTL	9	Unmodified	_RTLQHIVTL_					0	0	0		ENST00000566364.1_1_16:23400243-23404677:-|nuORF;AMDHD2-COG7|1|fusion;ENSG00000168434|ENST00000307149|COG7	ENST00000566364.1_1_16:23400243-23404677:-|nuORF	ENST00000566364.1_1_16:23400243-23404677:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	540.8317260742188	2	540.82984	1079.64513	-0.46856	-0.00025341	3.3565	0.0018153	2.8879	0.0015619	540.8317360682152	123.45	3.5017	123.21	122.89	126.4	-0.23193					177	70	5	0	0	0	0.68424	1	12112	12112		21.96	0	1	7794400			51760	84	42850	42881	56087	56087					0.10849113496919927
RTLSKLQW	8	Unmodified	_RTLSKLQW_					0	0	0		ENST00000506888.5_1_6:88187111-88216600:+|nuORF;nc|ENSG00000164414|P78382-2|SLC35A1;ENSG00000164414|ENST00000369552|SLC35A1	ENST00000506888.5_1_6:88187111-88216600:+|nuORF	ENST00000506888.5_1_6:88187111-88216600:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	516.302490234375	2	516.303458	1030.59236	-1.364	-0.00070426	0.62015	0.00032019	-0.7439	-0.00038408	516.3037096883031	61.9	2.366	59.14	58.568	60.934	-2.7593					127	45	4	0	0	0	0.62474	1	4681	4681		58.782	7.4465	1	1077700			51761	6455	42851	42882	56088	56088					0.07829155434069435
RTMGPSNYKL	10	Unmodified	_RTMGPSNYKL_					0	0	0			REV__ENST00000488014.5_1_1:84335647-84352897:-|nuORF	REV__ENST00000488014.5_1_1:84335647-84352897:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8033447265625	2	583.802965	1165.59138	0.97841	0.0005712	-0.94752	-0.00055316	0.03089	1.8034E-05	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.85358	1	1526	1526		12.207	0.69566	1	155970	+		51762	19494	42852	42883	56089	56089					0.015205730028583275
RTNARPRRRQ	10	Unmodified	_RTNARPRRRQ_					0	0	0			REV__ENST00000560141.2_1_15:45023912-45024338:+|nuORF	REV__ENST00000560141.2_1_15:45023912-45024338:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	437.2610168457031	3	437.592337	1309.75518	-0.33593	-0.000147	2.2504	0.00098474	1.9144	0.00083774	437.59325972848154	49.852	1.5354	47.058	46.587	48.123	-2.794					69	30	3	0	0	0	0.026881	1	3237	3237		53.089	10.751	1	151740	+		51763	27610	42853	42884	56090	56090					0.11269351608643774
RTNEGILKV	9	Unmodified	_RTNEGILKV_					0	0	0		ENSG00000134757|ENST00000257189|DSG3	ENSG00000134757|ENST00000257189|DSG3	ENSG00000134757|ENST00000257189|DSG3	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.283203125	2	515.306198	1028.59784	-0.16121	-8.3073E-05	4.4341	0.0022849	4.2729	0.0022019	515.3083373574832	105.84	1.5952	105.41	104.7	106.3	-0.43642					56	31	2	0	0	0	0.027072	1	9910	9910		101.6	0	1	86304			51764	4323	42854	42885	56091	56091					0.08468834225891442
RTNFKSIRSI	10	Unmodified	_RTNFKSIRSI_					0	0	0		PKD2L2|p.D217Efs*9|1|0.14|ENSG00000078795|chr5:137899639-137899649|TGACCTTCGAC/-|frameshift_variant;nc|ENSG00000078795|Q9NZM6-6|PKD2L2;nc|ENSG00000078795|Q9NZM6-2|PKD2L2;nc|ENSG00000078795|Q9NZM6-7|PKD2L2;nc|ENSG00000078795|Q9NZM6-5|PKD2L2;ENSG00000078795|ENST00000508883|PKD2L2	PKD2L2|p.D217Efs*9|1|0.14|ENSG00000078795|chr5:137899639-137899649|TGACCTTCGAC/-|frameshift_variant	PKD2L2|p.D217Efs*9|1|0.14|ENSG00000078795|chr5:137899639-137899649|TGACCTTCGAC/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3546752929688	2	611.356754	1220.69895	-2.725	-0.001666	1.4566	0.0008905	-1.2684	-0.00077546	611.3575283211214	150.83	4.6872	149.39	148.02	152.71	-1.4344					404	109	6	0	0	0	0.67987	1	14943	14943		32.751	6.0576	1	435030			51765	1601	42855	42886	56092	56092					0.09743285928584555
RTNGLLAPR	9	Unmodified	_RTNGLLAPR_					0	0	0			REV__nc|ENSG00000140481|Q8N5R6-2|CCDC33	REV__nc|ENSG00000140481|Q8N5R6-2|CCDC33	MULTI-MSMS	OvCa99_classI_Rep5	1	499.2986145019531	2	499.298707	996.582862	-1.085	-0.00054173	0.78759	0.00039324	-0.29739	-0.00014849	499.29890924612164	27.551	0.35027	27.551	27.39	27.741	0					16	6	4	0	0	0	0.31747	1	822	822		60.972	0	1	148320	+		51766	28895	42856	42887	56093	56093					0.08443387148565762
RTNPGILI	8	Unmodified	_RTNPGILI_					0	0	0		tr|A0A7D7A6N6|A0A7D7A6N6_9CLOTHydroxylaminereductaseOS=ClostridiumintestinaleOX=36845GN=hcpPE=3SV=1	tr|A0A7D7A6N6|A0A7D7A6N6_9CLOTHydroxylaminereductaseOS=ClostridiumintestinaleOX=36845GN=hcpPE=3SV=1	tr|A0A7D7A6N6|A0A7D7A6N6_9CLOTHydroxylaminereductaseOS=ClostridiumintestinaleOX=36845GN=hcpPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.236572265625	2	442.271627	882.528701	-1.0291	-0.00045513	0.97774	0.00043243	-0.051321	-2.2698E-05	442.2718356792374	53.468	0.56136	50.26	49.944	50.505	-3.208					16	10	2	0	0	0	0.028476	1	3278	3278		54.765	15.959	1	20397			51767	36199	42857	42888	56094	56094					0.08273794997001005
RTNSKTFY	8	Unmodified	_RTNSKTFY_					0	0	0		ENST00000548535.1_1_12:76779917-76783618:-|nuORF;nc|ENSG00000091039|Q9BZF1-3|OSBPL8;nc|ENSG00000091039|Q9BZF1-2|OSBPL8;ENSG00000091039|ENST00000261183|OSBPL8	ENST00000548535.1_1_12:76779917-76783618:-|nuORF	ENST00000548535.1_1_12:76779917-76783618:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.302978515625	2	508.761623	1015.50869	-0.5483	-0.00027896	4.0033	0.0020367	3.455	0.0017577	509.26675418252825	37.951	0.44679	37.951	37.668	38.114	0					14	9	2	0	0	0	0.028476	1	2122	2122		65.803	0	1	47938			51768	1859	42858	42889	56095	56095					0.001559992663715093
RTNYNFQYI	9	Unmodified	_RTNYNFQYI_					0	0	0		ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	MULTI-MSMS	OvCa99_classI_Rep5	1	609.8001708984375	2	609.798737	1217.58292	2.0917	0.0012755	-0.4466	-0.00027233	1.6451	0.0010032	609.7983905748293	110.27	1.7883	110.27	109.64	111.42	0					99	39	4	0	0	0	0.35444	1	12514	12514		56.721	1.9447	1	6841300			51769	5968	42859	42890	56096	56096					-0.01716657642100472
RTPAEDLL	8	Unmodified	_RTPAEDLL_					0	0	0			REV__ENST00000375856.4_1_13:110408345-110408618:-|nuORF	REV__ENST00000375856.4_1_13:110408345-110408618:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	457.7508239746094	2	457.750724	913.486896	-0.87142	-0.00039889	0.57373	0.00026263	-0.29769	-0.00013627	457.7507882822118	36.902	0.49845	36.902	36.707	37.205	0					30	10	4	0	0	0	0.45246	1	1985	1985		82.305	2.3658	1	446480	+		51770	25090	42860	42891	56097	56097					0.026691945178072274
RTPAEDLL	8	Unmodified	_RTPAEDLL_					0	0	0			REV__ENST00000375856.4_1_13:110408345-110408618:-|nuORF	REV__ENST00000375856.4_1_13:110408345-110408618:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	457.750724	913.486896	-0.87142	-0.00039889	0.57373	0.00026263	-0.29769	-0.00013627	457.7507882822118	36.902	0.49845	36.902	36.707	37.205	0	0	0	NaN	82.305	30	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	446480	+		51771	25090	42860	42891							0.026691945178072274
RTPATPPQPCV	11	Unmodified	_RTPATPPQPCV_					0	0	0			REV__CON__P04258	REV__CON__P04258	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8031616210938	2	583.802965	1165.59138	0.97841	0.0005712	-0.94752	-0.00055316	0.03089	1.8034E-05	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.69735	1	1450	1450		30.569	4.5055	1	155970	+	+	51772	16187	42861	42892	56098	56098					0.015205730028583275
RTPKLHVVQ	9	Unmodified	_RTPKLHVVQ_					0	0	0			REV__ENST00000510957.1_1_22:31049909-31050715:-|nuORF	REV__ENST00000510957.1_1_22:31049909-31050715:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.3032836914062	2	539.330008	1076.64546	-0.61764	-0.00033311	0.1095	5.9056E-05	-0.50814	-0.00027405	539.3305500277637	69.685	0.617	69.685	69.513	70.13	0					20	14	2	0	0	0	0.027462	1	6641	6641		20.947	0	1	1093900	+		51773	26950	42862	42893	56099	56099					0.11020533216742479
RTPKLRVVK	9	Unmodified	_RTPKLRVVK_					0	0	0			REV__nc|ENSG00000293056|Q6NVV1|RPL13AP3	REV__nc|ENSG00000293056|Q6NVV1|RPL13AP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.2938842773438	2	548.8693	1095.72405	-0.84588	-0.00046428	0.95627	0.00052487	0.11039	6.0589E-05	548.8695815587644	59.637	0.50185	59.637	59.377	59.879	0					27	12	3	0	0	0	0.027462	1	5162	5162		15.642	0	1	441210	+		51774	29221	42863	42894	56100	56100					0.18001385521824886
RTPPRRMPPP	10	Unmodified	_RTPPRRMPPP_					0	0	0		ENSG00000133226|ENST00000323848|SRRM1;nc|ENSG00000133226|Q8IYB3-2|SRRM1	ENSG00000133226|ENST00000323848|SRRM1	ENSG00000133226|ENST00000323848|SRRM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.5547180175781	3	402.229237	1203.66588	0.67661	0.00027215	1.6807	0.00067603	2.3573	0.00094818	402.22972425869233	37.598	0.46195	37.598	37.344	37.806	0					13	9	2	0	0	0	0.027056	1	2057	2057		10.104	0	1	128750			51775	4213	42864	42895	56101	56101					0.07219380604897196
RTPRILKKP	9	Unmodified	_RTPRILKKP_					0	0	0		HUNK|p.V532L|1|0.06|ENSG00000142149|chr21:31998633-31998633|G/C|missense_variant	HUNK|p.V532L|1|0.06|ENSG00000142149|chr21:31998633-31998633|G/C|missense_variant	HUNK|p.V532L|1|0.06|ENSG00000142149|chr21:31998633-31998633|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	554.8701171875	2	554.8693	1107.72405	-1.9281	-0.0010698	1.7342	0.00096224	-0.19392	-0.0001076	554.8701070642081	36.184	1.0367	33.474	33.251	34.287	-2.7097					47	20	3	0	0	0	0.5811	1	1537	1537		34.173	7.4796	1	161970			51776	14497	42865	42896	56102	56102					0.17449385521831573
RTPRLQDP	8	Unmodified	_RTPRLQDP_					0	0	0		nc|ENSG00000138709|Q659C4-5|LARP1B;ENST00000507259.5_1_4:129099587-129143542:+|nuORF;USP14-LARP1B|3|fusion;nc|ENSG00000138709|Q659C4-9|LARP1B;nc|ENSG00000138709|Q659C4-2|LARP1B;ENSG00000138709|ENST00000326639|LARP1B	nc|ENSG00000138709|Q659C4-5|LARP1B	nc|ENSG00000138709|Q659C4-5|LARP1B	MULTI-SECPEP	OvCa9_classI_Rep3	3	492.2931823730469	2	491.775065	981.535577	-1.3035	-0.00064101	-0.61361	-0.00030176	-1.9171	-0.00094277	491.77341917663676	83.578	0.27384	81.317	81.116	81.39	-2.261					7	5	2	0	0	0	0.028476	1	4761	4761		44.117	13.613	1	35195			51777	4716	42866	42897	56103	56103					0.04407107877545968
RTQDVSPQAL	10	Unmodified	_RTQDVSPQAL_					0	0	0		ENSG00000177984|ENST00000316144|LCN15	ENSG00000177984|ENST00000316144|LCN15	ENSG00000177984|ENST00000316144|LCN15	MULTI-MSMS	OvCa99_classI_Rep5	1	557.7957763671875	2	557.796195	1113.57784	2.4375	0.0013596	-3.5125	-0.0019592	-1.075	-0.00059963	557.7940345891211	85.259	2.5743	85.259	83.419	85.994	0					157	61	4	0	0	0	0.53807	1	8962	8962		49.536	1.5765	1	5211400			51778	7724	42867	42898	56104	56104					0.02559038495292043
RTRELHLRC	9	Unmodified	_RTRELHLRC_					0	0	0			REV__nc|ENSG00000134490|Q24JQ0-3|TMEM241	REV__nc|ENSG00000134490|Q24JQ0-3|TMEM241	MULTI-SECPEP	OvCa9_classI_Rep2	2	592.3016357421875	2	592.327473	1182.64039	-0.059151	-3.5037E-05	-3.0324	-0.0017962	-3.0916	-0.0018312	592.3245450867313	81.358	1.0733	79.71	79.365	80.438	-1.6485					39	20	3	0	0	0	0.027462	1	6876	6876		37.812	0	1	55575	+		51779	28864	42868	42899	56105	56105					0.056379060824838234
RTRFRWIQA	9	Unmodified	_RTRFRWIQA_					0	0	0		nc|ENSG00000189056|P78509-3|RELN;nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN	nc|ENSG00000189056|P78509-3|RELN	nc|ENSG00000189056|P78509-3|RELN	MULTI-MSMS	OvCa9_classI_Rep2	2	617.349853515625	2	617.351806	1232.68906	-4.0098	-0.0024755	1.48	0.00091369	-2.5298	-0.0015618	617.3525047754998	151.58	1.1368	151.35	150.94	152.08	-0.22696					56	22	4	0	0	0	0.56889	1	15385	15385		35.618	0.46626	1	109310			51780	8529	42869	42900	56106	56106					0.0820214271388977
RTRGLLLLI	9	Unmodified	_RTRGLLLLI_					0	0	0			REV__nc|ENSG00000211793|A0A087WT02|TRAV9-2	REV__nc|ENSG00000211793|A0A087WT02|TRAV9-2	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.7772827148438	2	527.858401	1053.70225	2.3831	0.0012579	0.11309	5.9697E-05	2.4962	0.0013176	527.8583668428064	94.537	0.72685	94.537	94.306	95.033	0					45	16	4	0	0	0	0.027461	1	10356	10356		49.442	5.3247	1	1569000	+		51781	29117	42870	42901	56107	56107					0.177545807732713
RTRIPSLKGR	10	Unmodified	_RTRIPSLKGR_					0	0	0		ENST00000305560.10_1_15:45694595-45694670:+|nuORF	ENST00000305560.10_1_15:45694595-45694670:+|nuORF	ENST00000305560.10_1_15:45694595-45694670:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	592.3720703125	2	592.372738	1182.73092	-4.4138	-0.0026146	3.2677	0.0019357	-1.1461	-0.0006789	592.3745667748314	155.34	1.3333	153.85	153.54	154.88	-1.4911					97	38	4	0	0	0	0.75313	1	15425	15425		24.519	3.5723	1	262760			51782	10237	42871	42902	56108	56108					0.1468669840239727
RTRISRCQ	8	Unmodified	_RTRISRCQ_					0	0	0		nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5	nc|ENSG00000188153|P29400|COL4A5	nc|ENSG00000188153|P29400|COL4A5	MULTI-MSMS	OvCa9_classI_Rep3	3	510.2816162109375	2	510.279992	1018.54543	1.5054	0.00076817	0.94246	0.00048092	2.4479	0.0012491	510.28027552379746	62.202	1.7602	59.168	58.656	60.417	-3.0339					84	39	3	0	0	0	0.45246	1	2247	2247		82.305	0	1	77332			51783	8453	42872	42903	56109	56109					0.036899726112892495
RTRISRCQ	8	Unmodified	_RTRISRCQ_					0	0	0		nc|ENSG00000188153|P29400|COL4A5;ENSG00000188153|ENST00000328300|COL4A5	nc|ENSG00000188153|P29400|COL4A5	nc|ENSG00000188153|P29400|COL4A5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	510.279992	1018.54543	-1.5773	-0.00080484	3.2872	0.0016774	1.7099	0.00087254	510.2816328410293	61.873	1.2642	59.114	58.568	59.832	-2.7593	-0.041916	0.0015598	NaN	82.305	58	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139580			51784	8453	42872	42903							0.036899726112892495
RTRKEEWERRK	11	Unmodified	_RTRKEEWERRK_					0	0	0		nc|ENSG00000132970|Q9UPY6-2|WASF3	nc|ENSG00000132970|Q9UPY6-2|WASF3	nc|ENSG00000132970|Q9UPY6-2|WASF3	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.3258666992188	3	525.293845	1572.85971	-0.81483	-0.00042803	-0.75575	-0.00039699	-1.5706	-0.00082502	525.2932588098317	41.509	0.52267	41.509	41.33	41.853	0					18	11	2	0	0	0	0.026431	1	2591	2591		15.921	7.1213	1	109340			51785	15020	42873	42904	56110	56110					0.09619008574668442
RTRKRRRWRYS	11	Unmodified	_RTRKRRRWRYS_					0	0	0		ENST00000433071.2_1_21:32931573-32932426:+|nuORF	ENST00000433071.2_1_21:32931573-32932426:+|nuORF	ENST00000433071.2_1_21:32931573-32932426:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	540.9828491210938	3	540.985457	1619.93454	-0.024476	-1.3241E-05	0.93924	0.00050812	0.91476	0.00049487	540.9858309876582	22.012	0.40033	22.012	21.827	22.228	0					33	12	4	0	0	0	0.72582	1	158	158		3.2113	2.8991	1	79851			51786	11823	42874	42905	56111	56111					0.14937235896582024
RTRKRRRWRYS	11	Unmodified	_RTRKRRRWRYS_					0	0	0		ENST00000433071.2_1_21:32931573-32932426:+|nuORF	ENST00000433071.2_1_21:32931573-32932426:+|nuORF	ENST00000433071.2_1_21:32931573-32932426:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	540.98583984375	3	540.985457	1619.93454	2.6295	0.0014225	-2.1569	-0.0011668	0.47264	0.00025569	540.9842345041635	25.895	1.1084	23.185	22.938	24.047	-2.7097					63	26	4	0	0	0	0.72579	2	306	306;311		5.1424	3.6194	1	126350			51787	11823	42874	42905	56112;56113	56112					0.14937235896582024
RTRMEHVL	8	Unmodified	_RTRMEHVL_					0	0	0			REV__tr|A0A553SRY8|A0A553SRY8_NIACIfructose-bisphosphatealdolaseOS=NialliacirculansOX=1397GN=CEQ21_02115PE=3SV=1	REV__tr|A0A553SRY8|A0A553SRY8_NIACIfructose-bisphosphatealdolaseOS=NialliacirculansOX=1397GN=CEQ21_02115PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.2609252929688	2	521.284743	1040.55493	0.056726	2.957E-05	2.655	0.001384	2.7117	0.0014136	521.2865126314967	140.87	0.45329	140.87	140.78	141.23	0					10	8	2	0	0	0	0.028476	1	16460	16460		56.721	10.749	1	10052	+		51788	30777	42875	42906	56114	56114					0.036277408968317104
RTRNLLPFG	9	Unmodified	_RTRNLLPFG_					0	0	0		ENST00000471836.1_1_22:44577677-44581773:+|nuORF;ENST00000475485.6_1_22:44577677-44582522:+|nuORF	ENST00000471836.1_1_22:44577677-44581773:+|nuORF	ENST00000471836.1_1_22:44577677-44581773:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	537.3150024414062	2	537.314358	1072.61416	-0.85655	-0.00046024	0.35592	0.00019124	-0.50063	-0.00026899	537.3145266218081	49.749	0.6067	49.749	49.507	50.114	0					39	13	4	0	0	0	0.56889	1	3739	3739		35.618	0	1	927640			51789	12388	42876	42907	56115	56115					0.08075960182668496
RTRNPEKLK	9	Unmodified	_RTRNPEKLK_					0	0	0		ENSG00000139218|ENST00000369367|SCAF11;nc|ENSG00000139218|Q99590-2|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	ENSG00000139218|ENST00000369367|SCAF11	MULTI-MSMS	OvCa99_classI_Rep5	1	571.3447875976562	2	571.343646	1140.67274	-0.55924	-0.00031952	0.039027	2.2298E-05	-0.52022	-0.00029722	571.3437173018539	54.696	1.0594	54.696	54.214	55.273	0					71	24	5	0	0	0	0.28934	1	4415	4415		64.207	7.4862	1	7790200			51790	4757	42877	42908	56116	56116					0.10803016757108708
RTRNRRRGRTC	11	Unmodified	_RTRNRRRGRTC_					0	0	0			REV__DNMT1|p.D701Tfs*87|1|0.11|ENSG00000130816|chr19:10151514-10151515|-/CTTGACTTGCATGGTCCTCTGTTACTTAAAGT|frameshift_variant	REV__DNMT1|p.D701Tfs*87|1|0.11|ENSG00000130816|chr19:10151514-10151515|-/CTTGACTTGCATGGTCCTCTGTTACTTAAAGT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	477.9349060058594	3	477.935998	1430.78616	-0.079097	-3.7803E-05	-1.868	-0.00089277	-1.9471	-0.00093057	477.9350959397934	70.327	1.6437	67.757	67.361	69.005	-2.5707					95	31	4	0	0	0	0.72458	2	5610	5610;5621		21.032	0.6664	1	809310	+		51791	16324	42878	42909	56117;56118	56117					0.08800181651236016
RTRNRRRRRD	10	Unmodified	_RTRNRRRRRD_					0	0	0		ENST00000361972.8_1_10:7212945-7217999:-|nuORF	ENST00000361972.8_1_10:7212945-7217999:-|nuORF	ENST00000361972.8_1_10:7212945-7217999:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	481.2831726074219	3	481.285907	1440.83589	-6.6786	-0.0032143	1.7478	0.00084119	-4.9308	-0.0023731	481.2868612614486	161.01	3.7232	159.65	158.49	162.21	-1.3523					206	77	3	0	0	0	0.8915	1	14047	14047		7.3997	0.38104	1	127690			51792	10811	42879	42910	56119	56119					0.1331063265154171
RTRQEKEKKVL	11	Unmodified	_RTRQEKEKKVL_					0	0	0			REV__CDK12|p.P653L|1|0.58|ENSG00000167258|chr17:39490583-39490583|C/T|missense_variant	REV__CDK12|p.P653L|1|0.58|ENSG00000167258|chr17:39490583-39490583|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	472.2826843261719	3	472.287808	1413.8416	-6.0447	-0.0028549	-2.5284	-0.0011941	-8.5731	-0.004049	472.28675973301637	159.08	3.3809	157.81	156.71	160.09	-1.267					177	72	4	0	0	0	0.72538	1	13678	13678		10.587	0.4829	1	110830	+		51793	15770	42880	42911	56120	56120					0.15122873599966624
RTRRDLIQDQN	11	Unmodified	_RTRRDLIQDQN_					0	0	0		PNN|p.Q403Rfs*3|1|0.34|ENSG00000100941|chr14:39180915-39180915|C/-|frameshift_variant;ENSG00000100941|ENST00000216832|PNN	PNN|p.Q403Rfs*3|1|0.34|ENSG00000100941|chr14:39180915-39180915|C/-|frameshift_variant	PNN|p.Q403Rfs*3|1|0.34|ENSG00000100941|chr14:39180915-39180915|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.7740173339844	3	472.255167	1413.74367	0.054347	2.5666E-05	2.2294	0.0010529	2.2838	0.0010785	472.59222459221553	70.538	0.19613	67.057	66.934	67.13	-3.4812					5	3	2	0	0	0	0.02609	1	5324	5324		23.514	8.1769	1	23252			51794	2125	42881	42912	56121	56121					0.053350650040101755
RTRRMRRMRMK	11	Unmodified	_RTRRMRRMRMK_					0	0	0			REV__chr19:12943629-12943834|374|324.78|0.67|8.91|+|0|CALR,None|1	REV__chr19:12943629-12943834|374|324.78|0.67|8.91|+|0|CALR,None|1	MULTI-MSMS	OvCa9_classI_Rep3	3	526.63525390625	3	526.634385	1576.88133	0.89518	0.00047143	0.21503	0.00011324	1.1102	0.00058468	526.6344674636681	62.939	1.7933	59.905	59.561	61.354	-3.0339					97	35	4	0	0	0	0.72493	1	2332	2332		16.53	6.8837	1	164120	+		51795	15963	42882	42913	56122	56122					0.11596075526358618
RTRRRRRFFLL	11	Unmodified	_RTRRRRRFFLL_					0	0	0			REV__ENST00000394833.6_1_4:103265936-103266233:-|nuORF	REV__ENST00000394833.6_1_4:103265936-103266233:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	526.3260498046875	3	526.330565	1575.96987	-7.4014	-0.0038956	-1.7041	-0.00089694	-9.1055	-0.0047925	526.3294500227709	163.98	0.2774	162.59	162.42	162.69	-1.3925					13	5	3	0	0	0	0.72582	1	14322	14322		3.4087	1.99	1	852860	+		51796	25303	42883	42914	56123	56123					0.20491898424370447
RTRRRRRFFLL	11	Unmodified	_RTRRRRRFFLL_					0	0	0			REV__ENST00000394833.6_1_4:103265936-103266233:-|nuORF	REV__ENST00000394833.6_1_4:103265936-103266233:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	526.330565	1575.96987	-5.1383	-0.0027044	-1.4075	-0.00074082	-6.5458	-0.0034452	526.3296908053387	162.8	0.27551	162.57	162.4	162.68	-0.22696	0.015938	0.00012621	NaN	3.4087	14	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	501040	+		51797	25303	42883	42914							0.20491898424370447
RTRRRRRFFLL	11	Unmodified	_RTRRRRRFFLL_					0	0	0			REV__ENST00000394833.6_1_4:103265936-103266233:-|nuORF	REV__ENST00000394833.6_1_4:103265936-103266233:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		3	526.330565	1575.96987	-7.4014	-0.0038956	-1.7041	-0.00089694	-9.1055	-0.0047925	526.3294500227709	163.98	0.2774	162.59	162.42	162.69	-1.3925	0.03243	-0.00034217	NaN	3.4087	13	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	852860	+		51798	25303	42883	42914							0.20491898424370447
RTRRRRRFFLL	11	Unmodified	_RTRRRRRFFLL_					0	0	0			REV__ENST00000394833.6_1_4:103265936-103266233:-|nuORF	REV__ENST00000394833.6_1_4:103265936-103266233:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	526.330565	1575.96987	-7.1035	-0.0037388	-1.4546	-0.00076559	-8.5581	-0.0045044	526.3294954046152	164.14	0.24614	162.51	162.36	162.61	-1.6336	-0.048368	5.19E-05	NaN	3.4087	13	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	357220	+		51799	25303	42883	42914							0.20491898424370447
RTRTAIEKA	9	Unmodified	_RTRTAIEKA_					0	0	0		IGSF3|p.L764Pfs*100|1|0.09|ENSG00000143061|chr1:116588845-116588846|-/C|frameshift_variant;ENSG00000143061|ENST00000369486|IGSF3;nc|ENSG00000143061|O75054-2|IGSF3	IGSF3|p.L764Pfs*100|1|0.09|ENSG00000143061|chr1:116588845-116588846|-/C|frameshift_variant	IGSF3|p.L764Pfs*100|1|0.09|ENSG00000143061|chr1:116588845-116588846|-/C|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.2674560546875	2	523.309272	1044.60399	-0.49653	-0.00025984	0.18341	9.5978E-05	-0.31312	-0.00016386	523.3092503557704	30.556	0.88088	30.556	30.383	31.264	0					29	17	4	0	0	0	0.027462	1	1202	1202		16.473	0	1	626990			51800	5008	42884	42915	56124	56124					0.08347352457417401
RTRVALPK	8	Unmodified	_RTRVALPK_					0	0	0			REV__ENST00000348165.9_1_7:157009613-157009655:+|nuORF	REV__ENST00000348165.9_1_7:157009613-157009655:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.3288879394531	2	470.806168	939.597784	-0.18816	-8.8586E-05	0.0086867	4.0898E-06	-0.17947	-8.4496E-05	470.80583987459863	35.428	0.27402	35.428	35.246	35.52	0					9	5	2	0	0	0	0.028476	1	1777	1777		20.947	3.582	1	18994	+		51801	24705	42885	42916	56125	56125					0.1255687901654028
RTRWRRRLLLR	11	Unmodified	_RTRWRRRLLLR_					0	0	0		ENST00000431489.5_1_2:62933068-62933182:+|nuORF	ENST00000431489.5_1_2:62933068-62933182:+|nuORF	ENST00000431489.5_1_2:62933068-62933182:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2835693359375	3	528.006081	1580.99641	-0.81165	-0.00042855	1.1944	0.00063066	0.38276	0.0002021	528.0065139473336	52.048	0.56099	52.048	51.829	52.39	0					32	12	4	0	0	0	0.026538	1	4091	4091		3.026	2.5836	1	453440			51802	11801	42886	42917	56126	56126					0.22915587315719677
RTSDSPTW	8	Unmodified	_RTSDSPTW_					0	0	0			REV__ENST00000295226.1_1_2:223163074-223168617:+|nuORF	REV__ENST00000295226.1_1_2:223163074-223168617:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	474.256591796875	2	475.222331	948.430109	0.5521	0.00026237	-1.3988	-0.00066476	-0.84675	-0.00040239	475.2215879495552	61.829	0.56778	58.372	58.197	58.765	-3.4577					17	11	2	0	0	0	0.028476	1	4247	4247		31.955	21.089	1	63161	+		51803	24187	42887	42918	56127	56127					-0.04616853038726276
RTSKTLLTL	9	Unmodified	_RTSKTLLTL_					0	0	0			REV__KPNA6|p.E517Dfs*11|1|0.17|ENSG00000025800|chr1:32170833-32170834|AA/-|frameshift_variant	REV__KPNA6|p.E517Dfs*11|1|0.17|ENSG00000025800|chr1:32170833-32170834|AA/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2695922851562	2	516.824224	1031.63389	1.9751	0.0010208	2.8331	0.0014642	4.8082	0.002485	516.8257642654409	86.933	0.29471	86.933	86.801	87.096	0					8	6	2	0	0	0	0.027462	1	9172	9172		40.778	18.818	1	164300	+		51804	16570	42888	42919	56128	56128					0.1193429140275839
RTSLRLKKRQ	10	Unmodified	_RTSLRLKKRQ_					0	0	0		ENST00000555761.5_2_14:78221311-78221455:-|nuORF	ENST00000555761.5_2_14:78221311-78221455:-|nuORF	ENST00000555761.5_2_14:78221311-78221455:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	643.4052124023438	2	643.412395	1284.81024	-6.0899	-0.0039183	-1.8809	-0.0012102	-7.9708	-0.0051285	643.4113037901998	164.11	0.25311	162.48	162.32	162.57	-1.6336					13	5	4	0	0	0	0.66721	1	16218	16218		34.173	7.4796	1	815040			51805	13651	42889	42920	56129	56129					0.17922345356532787
RTSQQPLML	9	Unmodified	_RTSQQPLML_					0	0	0		ENST00000599569.2_1_21:46491968-46492376:-|nuORF	ENST00000599569.2_1_21:46491968-46492376:-|nuORF	ENST00000599569.2_1_21:46491968-46492376:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.29931640625	2	537.292233	1072.56991	-1.7353	-0.00093234	-3.3595	-0.001805	-5.0947	-0.0027373	537.2903482734724	103.78	0.63705	103.78	103.51	104.15	0					29	14	3	0	0	0	0.027462	1	11618	11618		35.618	16.515	1	1028400			51806	14214	42890	42921	56130	56130					0.03653187974168759
RTSSSEAH	8	Unmodified	_RTSSSEAH_					0	0	0		nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;ENST00000534085.1_1_11:118377293-118378325:+|nuORF	nc|ENSG00000118058|Q03164-2|KMT2A	nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-SECPEP	OvCa9_classI_Rep2	2	437.9133605957031	2	437.704306	873.394058	0.038243	1.6739E-05	-0.65636	-0.00028729	-0.61811	-0.00027055	437.70404628781705	67.488	0.98872	64.827	64.298	65.286	-2.661					32	19	3	0	0	0	0.028476	1	5261	5261		30.504	2.6214	1	58945			51807	3286	42891	42922	56131	56131					-0.04770310215576501
RTSVKIVDP	9	Unmodified	_RTSVKIVDP_					0	0	0			REV__ENSG00000109436|ENST00000442267|TBC1D9	REV__ENSG00000109436|ENST00000442267|TBC1D9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.7721252441406	2	507.800749	1013.58694	-1.2338	-0.00062655	0.78921	0.00040076	-0.44464	-0.00022579	507.8011244097221	54.456	2.4006	51.208	50.466	52.866	-3.2474					94	46	4	0	0	0	0.027459	1	3368	3368		52.937	3.4952	1	1499800	+		51808	17928	42892	42923	56132	56132					0.08069431851617992
RTTCFLSALTC	11	Unmodified	_RTTCFLSALTC_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-MSMS	OvCa9_classI_Rep3	3	608.2959594726562	2	608.296659	1214.57876	3.6539	0.0022227	-3.5754	-0.0021749	0.078474	4.7736E-05	608.2942855637167	59.026	3.3501	55.911	55.036	58.386	-3.1147					203	93	3	0	0	0	0.69081	1	1922	1922		32.812	10.853	1	283460			51809	1495	42893	42924	56133	56133					-0.019942064516953906
RTTDIVIRI	9	Unmodified	_RTTDIVIRI_					0	0	0		UBE2O|p.E1121Rfs*4|1|0.12|ENSG00000175931|chr17:76391461-76391462|-/G|frameshift_variant;ENSG00000175931|ENST00000319380|UBE2O	UBE2O|p.E1121Rfs*4|1|0.12|ENSG00000175931|chr17:76391461-76391462|-/G|frameshift_variant	UBE2O|p.E1121Rfs*4|1|0.12|ENSG00000175931|chr17:76391461-76391462|-/G|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	543.8367309570312	2	543.835123	1085.65569	2.0259	0.0011018	0.16192	8.8057E-05	2.1878	0.0011898	543.8352554174036	82.23	1.2235	82.23	81.854	83.078	0					70	28	4	0	0	0	0.020196	1	8502	8502		146.79	42.729	1	4820100			51810	7572	42894	42925	56134	56134					0.11629096151295926
RTTEINFKV	9	Unmodified	_RTTEINFKV_					0	0	0		ENSG00000143320|ENST00000368222|CRABP2;ENSG00000166426|ENST00000299529|CRABP1	ENSG00000143320|ENST00000368222|CRABP2	ENSG00000143320|ENST00000368222|CRABP2	MSMS	OvCa99_classI_Rep5	1	554.312744140625	2	554.31148	1106.60841	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.895	1	68.895	68.395	69.395	0								0	0	0	0.02477	1	6527	6527		101.25	13.498	1				51811	5033	42895	42926	56135	56135					0.05936816880330298
RTTKGKRPK	9	Unmodified	_RTTKGKRPK_					0	0	0			REV__ENST00000235307.6_1_1:184356213-184476760:+|nuORF	REV__ENST00000235307.6_1_1:184356213-184476760:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	536.34033203125	2	536.340907	1070.66726	-1.7182	-0.00092153	1.6303	0.0008744	-0.087871	-4.7129E-05	536.341630118672	49.028	1.1881	46.267	45.829	47.017	-2.7603					49	23	3	0	0	0	0.56189	1	3083	3083		36.447	0.82846	1	119790	+		51812	23803	42896	42927	56136	56136					0.13475337965314793
RTTKVAIFV	9	Unmodified	_RTTKVAIFV_					0	0	0			REV__ENST00000582478.5_1_17:80008786-80009642:-|nuORF	REV__ENST00000582478.5_1_17:80008786-80009642:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	517.819091796875	2	517.821484	1033.62842	-2.2306	-0.0011551	-1.8311	-0.0009482	-4.0617	-0.0021033	517.8203985316244	146.61	1.347	146.38	145.92	147.27	-0.22696					66	26	3	0	0	0	0.68424	1	14777	14777		21.96	1.013	1	90796	+		51813	21479	42897	42928	56137	56137					0.1129461261095912
RTVALIKVK	9	Unmodified	_RTVALIKVK_					0	0	0		ENST00000587774.1_1_17:73872720-73874251:-|nuORF	ENST00000587774.1_1_17:73872720-73874251:-|nuORF	ENST00000587774.1_1_17:73872720-73874251:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.811279296875	2	514.352951	1026.69135	-0.8041	-0.00041359	0.75958	0.00039069	-0.044524	-2.2901E-05	514.3531510988347	44.462	0.31306	44.462	44.305	44.618	0					9	6	2	0	0	0	0.027462	1	2989	2989		13.454	0	1	53045			51814	14069	42898	42929	56138	56138					0.17907178398968426
RTVEPPPL	8	Unmodified	_RTVEPPPL_					0	0	0			REV__ENST00000581960.1_1_18:812149-812320:-|nuORF	REV__ENST00000581960.1_1_18:812149-812320:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	454.76531982421875	2	454.763635	907.512717	2.0727	0.00094261	0.20451	9.3005E-05	2.2773	0.0010356	454.7636468337306	79.475	2.6153	79.475	79.16	81.776	0					183	63	4	0	0	0	0.57878	2	8104	8104;8225		68.485	0	1	26941000	+		51815	27826	42899	42930	56139;56140	56139					0.055260887600866226
RTVGPEVVVS	10	Unmodified	_RTVGPEVVVS_					0	0	0			REV__ENST00000568164.1_1_16:75148422-75149226:-|nuORF	REV__ENST00000568164.1_1_16:75148422-75149226:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.794677734375	2	521.798206	1041.58186	-1.2309	-0.00064231	1.1083	0.00057829	-0.12269	-6.4018E-05	521.7987490065747	53.485	0.55946	53.485	53.214	53.774	0					20	12	2	0	0	0	0.026994	1	4295	4295		32.812	0	1	1086600	+		51816	21223	42900	42931	56141	56141					0.06273127989015848
RTVRDFDL	8	Unmodified	_RTVRDFDL_					0	0	0			REV__ENSG00000149256|ENST00000278550|TENM4	REV__ENSG00000149256|ENST00000278550|TENM4	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.276123046875	2	511.274898	1020.53524	-1.1741	-0.0006003	0.32787	0.00016763	-0.84625	-0.00043267	511.27493651774756	45.468	1.4592	42.43	42.178	43.637	-3.0385					59	26	3	0	0	0	0.62474	1	2325	2325		58.782	9.3404	1	554800	+		51817	20151	42901	42932	56142	56142					0.025796881576980013
RTVRDFDL	8	Unmodified	_RTVRDFDL_					0	0	0			REV__ENSG00000149256|ENST00000278550|TENM4	REV__ENSG00000149256|ENST00000278550|TENM4	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	511.274898	1020.53524	-1.1741	-0.0006003	0.32787	0.00016763	-0.84625	-0.00043267	511.27493651774756	45.468	1.4592	42.43	42.178	43.637	-3.0385	-0.070974	0.00049484	NaN	58.782	59	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	554800	+		51818	20151	42901	42932							0.025796881576980013
RTVREHRR	8	Unmodified	_RTVREHRR_					0	0	0			REV__nc|ENSG00000185008|Q9HCK4-3|ROBO2	REV__nc|ENSG00000185008|Q9HCK4-3|ROBO2	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.262939453125	2	555.32358	1108.63261	0.63604	0.00035321	3.2675	0.0018145	3.9035	0.0021677	555.3259955926787	72.386	0.39642	72.386	72.249	72.645	0					13	9	2	0	0	0	0.028476	1	7043	7043		24.519	7.1542	1	260610	+		51819	29053	42902	42933	56143	56143					0.08263514877216949
RTVSVPVPE	9	Unmodified	_RTVSVPVPE_					0	0	0			REV__ENSG00000196704|ENST00000359904|AMZ2	REV__ENSG00000196704|ENST00000359904|AMZ2	MULTI-MSMS	OvCa99_classI_Rep5	1	492.28253173828125	2	492.279649	982.544745	-0.56634	-0.0002788	-0.064209	-3.1609E-05	-0.63055	-0.00031041	492.2795043889367	48.607	0.91518	48.607	48.372	49.287	0					47	20	4	0	0	0	0.28934	1	3601	3601		64.207	5.4253	1	3332000	+		51820	22858	42903	42934	56144	56144					0.05277456443241135
RTVVSQEDL	9	Unmodified	_RTVVSQEDL_					0	0	0		tr|A0A7D6ZYZ8|A0A7D6ZYZ8_9CLOTATP-dependentzincmetalloproteaseFtsHOS=ClostridiumintestinaleOX=36845GN=ftsHPE=3SV=1	tr|A0A7D6ZYZ8|A0A7D6ZYZ8_9CLOTATP-dependentzincmetalloproteaseFtsHOS=ClostridiumintestinaleOX=36845GN=ftsHPE=3SV=1	tr|A0A7D6ZYZ8|A0A7D6ZYZ8_9CLOTATP-dependentzincmetalloproteaseFtsHOS=ClostridiumintestinaleOX=36845GN=ftsHPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	523.7762451171875	2	523.77747	1045.54039	-0.81886	-0.0004289	0.53163	0.00027845	-0.28723	-0.00015044	523.7775993055807	38.772	0.44105	38.772	38.576	39.017	0					24	9	4	0	0	0	0.31122	1	2227	2227		61.691	3.4614	1	569930			51821	35937	42904	42935	56145	56145					0.019439472296653548
RTWLLLVRQLQ	11	Unmodified	_RTWLLLVRQLQ_					0	0	0		ENST00000360004.5_2_6:32546675-32546804:-|nuORF	ENST00000360004.5_2_6:32546675-32546804:-|nuORF	ENST00000360004.5_2_6:32546675-32546804:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	475.9606018066406	3	475.961144	1424.8616	1.142	0.00054357	-1.9336	-0.00092032	-0.79157	-0.00037676	475.96017295616696	107.25	2.8215	105.99	105.67	108.49	-1.267					142	54	4	0	0	0	0.72483	1	7651	7651		17.833	0.6664	1	646610			51822	10765	42905	42936	56146	56146					0.16616669330619516
RTWLPLGPVWS	11	Unmodified	_RTWLPLGPVWS_					0	0	0			REV__ENSG00000215910|ENST00000688073|C1orf167	REV__ENSG00000215910|ENST00000688073|C1orf167	MULTI-MSMS	OvCa9_classI_Rep4_	4	437.91461181640625	3	437.91179	1310.71354	0.92565	0.00040535	3.296	0.0014434	4.2216	0.0018487	437.91321126158874	68.233	1.716	64.743	64.235	65.951	-3.4902					106	34	5	0	0	0	0.68709	1	5047	5047		34.087	6.4426	1	1021300	+		51823	23321	42906	42937	56147	56147					0.07061358076748547
RTWLPLTL	8	Unmodified	_RTWLPLTL_					0	0	0		ENST00000397030.5_1_13:113750822-113750996:+|nuORF	ENST00000397030.5_1_13:113750822-113750996:+|nuORF	ENST00000397030.5_1_13:113750822-113750996:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	500.3011474609375	2	500.302927	998.591301	-1.3159	-0.00065835	-3.0549	-0.0015284	-4.3708	-0.0021867	500.3012326078976	49.253	1.4361	46.493	46.078	47.514	-2.7603					85	28	4	0	0	0	0.65062	1	3103	3103		53.351	2.1588	1	227370			51824	11334	42907	42938	56148	56148					0.09194941065175044
RTWLPLTL	8	Unmodified	_RTWLPLTL_					0	0	0		ENST00000397030.5_1_13:113750822-113750996:+|nuORF	ENST00000397030.5_1_13:113750822-113750996:+|nuORF	ENST00000397030.5_1_13:113750822-113750996:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.3020935058594	2	500.302927	998.591301	-2.5178	-0.0012597	-2.4789	-0.0012402	-4.9967	-0.0024999	500.3016116465229	49.594	1.71	46.453	46.043	47.753	-3.1416					106	32	6	0	0	0	0.60331	1	2805	2805		63.306	1.1989	1	775810			51825	11334	42907	42938	56149	56149					0.09194941065175044
RTYQEIQEL	9	Unmodified	_RTYQEIQEL_					0	0	0		ENSG00000123989|ENST00000243776|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF	ENSG00000123989|ENST00000243776|CHPF	ENSG00000123989|ENST00000243776|CHPF	MULTI-MSMS	OvCa9_classI_Rep3	3	590.3021850585938	2	590.303852	1178.59315	-1.7312	-0.0010219	0.60931	0.00035968	-1.1219	-0.00066226	590.3040816713418	76.506	1.8646	74.135	73.518	75.383	-2.3715					61	35	2	0	0	0	0.07097	2	3957	3950;3957		106.68	15.579	1	710390			51826	3619	42908	42939	56150;56151	56151					0.010999052924717034
RVAAALALG	9	Unmodified	_RVAAALALG_					0	0	0			REV__ENSG00000160200|ENST00000398165|CBS	REV__ENSG00000160200|ENST00000398165|CBS	MULTI-MSMS	OvCa9_classI_Rep2	2	421.2662048339844	2	421.266345	840.518136	0.38381	0.00016169	-0.26705	-0.0001125	0.11676	4.9187E-05	421.2661241842314	40.583	1.4287	37.873	37.551	38.98	-2.7097					85	28	4	0	0	0	0.52083	1	2050	2050		40.573	0	1	557040	+		51827	20645	42909	42940	56152	56152					0.09149812342548103
RVAAFPDLL	9	Unmodified	_RVAAFPDLL_					0	0	0			REV__nc|ENSG00000164818|Q86Y56-2|DNAAF5	REV__nc|ENSG00000164818|Q86Y56-2|DNAAF5	MULTI-MSMS	OvCa9_classI_Rep3	3	501.29046630859375	2	501.292559	1000.57057	-1.4695	-0.00073667	-2.6975	-0.0013522	-4.167	-0.0020889	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.67509	1	11012	11012		23.042	3.6825	1	97838	+		51828	21022	42910	42941	56153	56153					0.07030350685522535
RVADGMVF	8	Oxidation (M)	_RVADGM(Oxidation (M))VF_		RVADGM(1)VF		RVADGM(63)VF	0	0	1		ENSG00000143799|ENST00000366794|PARP1;PARP1|p.V490Afs*2|1|0.06|ENSG00000143799|chr1:226379996-226379997|-/G|frameshift_variant	ENSG00000143799|ENST00000366794|PARP1	ENSG00000143799|ENST00000366794|PARP1	MULTI-MSMS	OvCa99_classI_Rep5	1	455.7247619628906	2	455.726195	909.437837	0.28344	0.00012917	-3.7911	-0.0017277	-3.5076	-0.0015985	455.72428869485395	46.479	0.788	46.479	46.242	47.03	0					31	17	3	0	0	0	0.60486	1	3283	3283		62.978	12.954	1	556340			51829	5096	42911	42942	56154	56154		164			-0.02050417042778463
RVADIQTGNPI	11	Unmodified	_RVADIQTGNPI_					0	0	0		tr|A0A7D7A2G1|A0A7D7A2G1_9CLOTinorganicdiphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_16750PE=4SV=1	tr|A0A7D7A2G1|A0A7D7A2G1_9CLOTinorganicdiphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_16750PE=4SV=1	tr|A0A7D7A2G1|A0A7D7A2G1_9CLOTinorganicdiphosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_16750PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	592.2792358398438	2	592.325119	1182.63569	1.2865	0.00076203	3.4467	0.0020415	4.7332	0.0028036	592.3271147576778	145.52	0.94299	145.52	145.13	146.08	0					49	19	4	0	0	0	0.025378	1	17005	17005		36.318	21.453	1	331790			51830	36076	42912	42943	56155	56155					0.051673004207032136
RVADKYSDA	9	Unmodified	_RVADKYSDA_					0	0	0			REV__ENSG00000003756|ENST00000347869|RBM5	REV__ENSG00000003756|ENST00000347869|RBM5	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.2796630859375	2	512.756538	1023.49852	-0.93561	-0.00047974	2.3793	0.00122	1.4437	0.00074028	512.7576517706245	28.066	0.64772	28.066	27.841	28.489	0					25	12	3	0	0	0	0.027462	1	886	886		32.812	0	1	212140	+		51831	16375	42913	42944	56156	56156					-0.012286084588708945
RVAEKVDKT	9	Unmodified	_RVAEKVDKT_					0	0	0			REV__ENSG00000109805|ENST00000251496|NCAPG	REV__ENSG00000109805|ENST00000251496|NCAPG	MSMS	OvCa9_classI_Rep4_	4	523.302978515625	2	523.303655	1044.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.83	1	139.36	138.86	139.86	-1.4715								0	0	0	0.18141	1	13749	13749		32.812	2.9709	1		+		51832	17953	42914	42945	56157	56157					0.07224530363282611
RVAELKQIL	9	Unmodified	_RVAELKQIL_					0	0	0		nc|ENSG00000185267|Q49AH0-2|CDNF;ENSG00000185267|ENST00000465530|CDNF	nc|ENSG00000185267|Q49AH0-2|CDNF	nc|ENSG00000185267|Q49AH0-2|CDNF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3251342773438	2	535.340041	1068.66553	0.06837	3.6601E-05	-0.66178	-0.00035428	-0.59341	-0.00031767	535.3395522128252	66.623	0.52857	66.623	66.328	66.857	0					28	12	3	0	0	0	0.027462	1	6200	6200		51.193	0	1	430140			51833	8240	42915	42946	56158	56158					0.13394284156697722
RVAERLVNLNV	11	Unmodified	_RVAERLVNLNV_					0	0	0			REV__ENST00000544349.5_1_12:122735394-122750988:-|nuORF	REV__ENST00000544349.5_1_12:122735394-122750988:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8831176757812	2	641.883136	1281.75172	-4.605	-0.0029559	3.2611	0.0020933	-1.3439	-0.00086262	641.8852528126143	150.24	3.761	149.29	147.05	150.81	-0.95119					231	74	4	0	0	0	0.69099	1	12692	12692		32.751	4.669	1	246170	+		51834	19631	42916	42947	56159	56159					0.12211243991418996
RVAERLVNLNV	11	Unmodified	_RVAERLVNLNV_					0	0	0			REV__ENST00000544349.5_1_12:122735394-122750988:-|nuORF	REV__ENST00000544349.5_1_12:122735394-122750988:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8818969726562	2	641.883136	1281.75172	-5.3554	-0.0034376	4.4876	0.0028805	-0.86781	-0.00055703	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.68399	1	13180	13180		35.152	3.6222	1	804890	+		51835	19631	42916	42947	56160	56160					0.12211243991418996
RVAFFMRKG	9	Unmodified	_RVAFFMRKG_					0	0	0		ENSG00000156802|ENST00000287394|ATAD2;ENST00000517666.5_1_8:124333376-124408650:-|nuORF;ENST00000521496.5_1_8:124357024-124408597:-|nuORF;ENST00000521903.5_1_8:124361561-124413087:-|nuORF;nc|ENSG00000156802|Q6PL18-2|ATAD2	ENSG00000156802|ENST00000287394|ATAD2	ENSG00000156802|ENST00000287394|ATAD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.8428344726562	2	556.313303	1110.61205	-1.184	-0.00065869	2.9145	0.0016214	1.7305	0.00096269	556.3144413144438	64.054	0.52006	64.054	63.814	64.334	0					21	12	2	0	0	0	0.027462	1	5810	5810		34.173	5.023	1	918850			51836	5857	42917	42948	56161	56161					0.06117208173191102
RVAGGVITTAT	11	Unmodified	_RVAGGVITTAT_					0	0	0		ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	ENSG00000163872|ENST00000305135|YEATS2	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3025512695312	2	523.303655	1044.59276	-2.1228	-0.0011108	2.0352	0.001065	-0.087543	-4.5811E-05	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.71498	1	11413	11413		24.519	1.4767	1	183010			51837	6369	42918	42949	56162	56162					0.07224530363282611
RVAGIHKK	8	Unmodified	_RVAGIHKK_					0	0	0		ENST00000565571.5_1_16:89627367-89628201:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;nc|ENSG00000167526|P26373-2|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;chr16:89561022-89561578|196|246.55|0.86|8.16|+|0|None,RPL13|1;ENST00000440687.1_1_20:44728270-44728609:+|nuORF	ENST00000565571.5_1_16:89627367-89628201:+|nuORF	ENST00000565571.5_1_16:89627367-89628201:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	454.79339599609375	2	454.793061	907.571569	-0.63475	-0.00028868	0.72325	0.00032893	0.088498	4.0248E-05	454.7932242939138	26.704	0.44996	26.704	26.492	26.942	0					17	8	3	0	0	0	0.53531	1	719	719		73.975	13.681	1	139480			51838	6798	42919	42950	56163	56163					0.11408609845079809
RVAGIHKKV	9	Unmodified	_RVAGIHKKV_					0	0	0		ENST00000565571.5_1_16:89627367-89628201:+|nuORF;ENSG00000167526|ENST00000311528|RPL13;ENST00000399461.8_1_16:89627605-89629447:+|nuORF;chr16:89561022-89561578|196|246.55|0.86|8.16|+|0|None,RPL13|1;ENST00000440687.1_1_20:44728270-44728609:+|nuORF	ENST00000565571.5_1_16:89627367-89628201:+|nuORF	ENST00000565571.5_1_16:89627367-89628201:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	504.32696533203125	2	504.327268	1006.63998	-0.87551	-0.00044155	-0.01701	-8.5788E-06	-0.89252	-0.00045012	504.3273117553292	26.667	1.3488	26.667	26.442	27.791	0					75	26	5	0	0	0	0.29717	1	736	736		63.306	11.007	1	5633300			51839	6798	42920	42951	56164	56164					0.13692854424937195
RVAIEPFIT	9	Unmodified	_RVAIEPFIT_					0	0	0		tr|A0A553SMF7|A0A553SMF7_NIACIBeta-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_22515PE=3SV=1	tr|A0A553SMF7|A0A553SMF7_NIACIBeta-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_22515PE=3SV=1	tr|A0A553SMF7|A0A553SMF7_NIACIBeta-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_22515PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3032836914062	2	523.305667	1044.59678	-2.1227	-0.0011108	-1.8084	-0.00094634	-3.9311	-0.0020572	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.63422	1	11654	11654		27.882	0	1	183010			51840	33825	42921	42952	56165	56165					0.07626619856978323
RVAKRRVV	8	Unmodified	_RVAKRRVV_					0	0	0		ENSG00000087157|ENST00000262764|PGS1;PGS1|p.K158Rfs*53|1|0.03|ENSG00000087157|chr17:78398312-78398313|-/G|frameshift_variant;ENST00000585521.2_1_17:76374779-76411070:+|nuORF;PGS1|p.Y224Sfs*9|1|0.33|ENSG00000087157|chr17:78399507-78399507|A/-|frameshift_variant;nc|ENSG00000087157|Q32NB8-3|PGS1	ENSG00000087157|ENST00000262764|PGS1	ENSG00000087157|ENST00000262764|PGS1	MULTI-MSMS	OvCa99_classI_Rep5	1	492.3351745605469	2	492.332885	982.651216	0.33034	0.00016264	0.38124	0.00018769	0.71158	0.00035033	492.3327822504257	63.313	0.63162	63.313	63.058	63.69	0					35	15	3	0	0	0	0.59103	1	5690	5690		65.897	4.9255	1	2762300			51841	1765	42922	42953	56166	56166					0.1591967651908135
RVALKPDK	8	Unmodified	_RVALKPDK_					0	0	0			REV__ENST00000209929.9_1_1:171154426-171178089:+|nuORF	REV__ENST00000209929.9_1_1:171154426-171178089:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	462.93658447265625	2	463.792727	925.5709	0.29004	0.00013452	-0.25302	-0.00011735	0.037019	1.7169E-05	463.7923999715772	43.988	0.49854	41.278	41.054	41.552	-2.7097					15	9	2	0	0	0	0.028476	1	2499	2499		33.516	9.3128	1	22504	+		51842	17279	42923	42954	56167	56167					0.10513770405361811
RVALLCLRGPL	11	Unmodified	_RVALLCLRGPL_					0	0	0			REV__ENST00000366691.3_1_1:228871285-228871396:+|nuORF	REV__ENST00000366691.3_1_1:228871285-228871396:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	605.8713989257812	2	605.876268	1209.73798	-4.4327	-0.0026857	-2.6387	-0.0015988	-7.0715	-0.0042844	605.8745511795182	157.17	1.2501	156	155.65	156.91	-1.1707					83	31	4	0	0	0	0.71191	1	13584	13584		25.574	2.5316	1	204530	+		51843	24883	42924	42955	56168	56168					0.14150294958631093
RVALPSLEGII	11	Unmodified	_RVALPSLEGII_					0	0	0		ENSG00000153933|ENST00000284061|DGKE	ENSG00000153933|ENST00000284061|DGKE	ENSG00000153933|ENST00000284061|DGKE	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3567504882812	2	584.358431	1166.70231	-1.7162	-0.0010029	-1.68	-0.00098173	-3.3962	-0.0019846	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.71498	1	14246	14246		24.519	0.99649	1	833330			51844	5703	42925	42956	56169	56169					0.12562535982624468
RVALYGVNFL	10	Unmodified	_RVALYGVNFL_					0	0	0		tr|A0A553SMT8|A0A553SMT8_NIACIFormateacetyltransferaseOS=NialliacirculansOX=1397GN=pflBPE=3SV=1	tr|A0A553SMT8|A0A553SMT8_NIACIFormateacetyltransferaseOS=NialliacirculansOX=1397GN=pflBPE=3SV=1	tr|A0A553SMT8|A0A553SMT8_NIACIFormateacetyltransferaseOS=NialliacirculansOX=1397GN=pflBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.8425903320312	2	576.332216	1150.64988	-2.3696	-0.0013657	1.1893	0.00068543	-1.1803	-0.00068027	576.3326803084004	148.06	0.65106	146.63	146.33	146.98	-1.435					30	12	3	0	0	0	0.027056	1	14550	14550		35.618	2.8059	1	36452			51845	33871	42926	42957	56170	56170					0.08057997639662062
RVALYGVNFL	10	Unmodified	_RVALYGVNFL_					0	0	0		tr|A0A553SMT8|A0A553SMT8_NIACIFormateacetyltransferaseOS=NialliacirculansOX=1397GN=pflBPE=3SV=1	tr|A0A553SMT8|A0A553SMT8_NIACIFormateacetyltransferaseOS=NialliacirculansOX=1397GN=pflBPE=3SV=1	tr|A0A553SMT8|A0A553SMT8_NIACIFormateacetyltransferaseOS=NialliacirculansOX=1397GN=pflBPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	576.332216	1150.64988	-4.5456	-0.0026198	3.0527	0.0017593	-1.493	-0.00086046	576.3337444637832	147.55	0.8486	146.59	146.35	147.2	-0.95119	-0.081967	0.00088761	NaN	35.618	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38265			51846	33871	42926	42957							0.08057997639662062
RVAPAHGLFLK	11	Unmodified	_RVAPAHGLFLK_					0	0	0		ENST00000493657.1_1_1:1246183-1246756:+|nuORF;nc|ENSG00000169972|Q8N0Z8-2|PUSL1;ENSG00000169972|ENST00000379031|PUSL1	ENST00000493657.1_1_1:1246183-1246756:+|nuORF	ENST00000493657.1_1_1:1246183-1246756:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	403.579345703125	3	403.580264	1207.71896	0.69605	0.00028091	-0.17188	-6.9369E-05	0.52417	0.00021154	403.58016896627123	63.826	1.7809	61.081	60.79	62.571	-2.7444					92	33	4	0	0	0	0.076604	1	4848	4848		102.06	54.834	1	490660			51847	7060	42927	42958	56171	56171					0.12341081659201336
RVAPAHGLFLK	11	Unmodified	_RVAPAHGLFLK_					0	0	0		ENST00000493657.1_1_1:1246183-1246756:+|nuORF;nc|ENSG00000169972|Q8N0Z8-2|PUSL1;ENSG00000169972|ENST00000379031|PUSL1	ENST00000493657.1_1_1:1246183-1246756:+|nuORF	ENST00000493657.1_1_1:1246183-1246756:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	403.5804748535156	3	403.580264	1207.71896	2.3266	0.00093897	-2.0424	-0.00082427	0.2842	0.0001147	403.5793616790331	64.306	1.7709	61.313	61.038	62.809	-2.9933					61	34	4	0	0	0	0.076604	6	2484	2473;2477;2484;2490;2497;2504		102.06	54.102	1	174800			51848	7060	42927	42958	56172;56173;56174;56175;56176;56177	56174					0.12341081659201336
RVAPAHGLFLK	11	Unmodified	_RVAPAHGLFLK_					0	0	0		ENST00000493657.1_1_1:1246183-1246756:+|nuORF;nc|ENSG00000169972|Q8N0Z8-2|PUSL1;ENSG00000169972|ENST00000379031|PUSL1	ENST00000493657.1_1_1:1246183-1246756:+|nuORF	ENST00000493657.1_1_1:1246183-1246756:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	403.7309265136719	3	403.580264	1207.71896	1.9291	0.00077855	-1.7625	-0.00071129	0.16665	6.7258E-05	403.57950741890863	64.791	1.4539	61.305	60.872	62.325	-3.4854					82	29	4	0	0	0	0.025508	1	4617	4617		56.632	21.014	1	487070			51849	7060	42927	42958	56178	56178					0.12341081659201336
RVAPEEHPV	9	Unmodified	_RVAPEEHPV_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ACTB|p.K238Rfs*46|1|0.21|ENSG00000075624|chr7:5528372-5528372|C/-|frameshift_variant;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OvCa99_classI_Rep5	1	517.2749633789062	2	517.274898	1032.53524	-1.1972	-0.00061929	0.75765	0.00039192	-0.43957	-0.00022738	517.2750904318759	37.136	0.91425	37.136	36.707	37.621	0					33	19	3	0	0	0	0.35444	1	2010	2010		56.721	17.468	1	793290			51850	1537;8634	42928	42959	56179	56179					0.02027688157704688
RVAPEEHPVL	10	Unmodified	_RVAPEEHPVL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ACTB|p.K238Rfs*46|1|0.21|ENSG00000075624|chr7:5528372-5528372|C/-|frameshift_variant;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OvCa99_classI_Rep5	1	573.8181762695312	2	573.81693	1145.61931	-0.55036	-0.00031581	-0.01446	-8.2974E-06	-0.56482	-0.0003241	573.8169459400046	55.91	1.6135	55.91	55.48	57.093	0					100	38	6	0	0	0	0.0018634	3	4612	4585;4612;4642		171.38	83.208	1	17659000			51851	1537;8634	42929	42960	56180;56181;56182	56181					0.052322192545943835
RVAPEEHPVL	10	Unmodified	_RVAPEEHPVL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ACTB|p.K238Rfs*46|1|0.21|ENSG00000075624|chr7:5528372-5528372|C/-|frameshift_variant;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OvCa9_classI_Rep2	2	573.8167724609375	2	573.81693	1145.61931	-1.3063	-0.00074959	1.1287	0.00064767	-0.17763	-0.00010193	573.8174474200665	59.625	2.0984	56.845	56.241	58.34	-2.7801					98	39	4	0	0	0	0.35465	2	4350	4350;4373		74.255	24.813	1	469370			51852	1537;8634	42929	42960	56183;56184	56183					0.052322192545943835
RVAPEEHPVL	10	Unmodified	_RVAPEEHPVL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ACTB|p.K238Rfs*46|1|0.21|ENSG00000075624|chr7:5528372-5528372|C/-|frameshift_variant;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OvCa9_classI_Rep4_	4	573.8179321289062	2	573.81693	1145.61931	-0.067202	-3.8561E-05	-0.68153	-0.00039107	-0.74873	-0.00042964	573.8164571581569	60.303	1.7265	56.873	56.358	58.084	-3.43					103	34	4	0	0	0	0.22663	3	4082	4071;4082;4094		90.37	22.876	1	1368400			51853	1537;8634	42929	42960	56185;56186;56187	56186					0.052322192545943835
RVAPEEHPVLL	11	Unmodified	_RVAPEEHPVLL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ACTB|p.K238Rfs*46|1|0.21|ENSG00000075624|chr7:5528372-5528372|C/-|frameshift_variant;ENST00000576214.2_1_17:79478712-79479765:-|nuORF;ENST00000462494.5_1_7:5568599-5569288:-|nuORF;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OvCa99_classI_Rep5	1	630.3604125976562	2	630.358962	1258.70337	0.82643	0.00052095	-0.80338	-0.00050642	0.023054	1.4532E-05	630.3583867195382	72.269	0.4472	72.269	72.086	72.533	0					31	10	4	0	0	0	0.26821	1	7026	7026		70.816	24.844	1	3220500			51854	1537;8634	42930	42961	56188	56188					0.08436750351506817
RVAQGVHRAL	10	Unmodified	_RVAQGVHRAL_					0	0	0			REV__nc|ENSG00000070985|Q9NZQ8-2|TRPM5	REV__nc|ENSG00000070985|Q9NZQ8-2|TRPM5	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8278198242188	2	553.830706	1105.64686	-1.4967	-0.00082894	0.40847	0.00022623	-1.0883	-0.00060271	553.8307647537886	147.42	1.1434	145.98	145.43	146.58	-1.435					42	22	2	0	0	0	0.7759	1	14543	14543		21.96	3.6355	1	46629	+		51855	16895	42931	42962	56189	56189					0.09826167305527633
RVAQLEQVYI	10	Unmodified	_RVAQLEQVYI_					0	0	0		ENSG00000100028|ENST00000215829|SNRPD3;nc|ENSG00000286070|P62318-2|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	610.8094482421875	2	609.845687	1217.67682	2.5307	0.0015433	-0.32408	-0.00019764	2.2066	0.0013457	609.8453760996389	95.886	0.63857	95.886	95.615	96.253	0					48	14	4	0	0	0	0.027117	1	10472	10472		28.081	9.8194	1	5479900			51856	1995	42932	42963	56190	56190					0.0766906146020574
RVAQYVKRN	9	Unmodified	_RVAQYVKRN_					0	0	0			REV__ENSG00000140030|ENST00000267549|GPR65	REV__ENSG00000140030|ENST00000267549|GPR65	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3282470703125	2	567.330539	1132.64652	-3.474	-0.0019709	2.1482	0.0012187	-1.3258	-0.00075219	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.63422	1	12057	12057		27.882	1.1893	1	458690	+		51857	19649	42933	42964	56191	56191					0.0855074758567298
RVARGVPGG	9	Unmodified	_RVARGVPGG_					0	0	0			REV__ENST00000379359.3_1_13:42031701-42032475:+|nuORF	REV__ENST00000379359.3_1_13:42031701-42032475:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	434.7593994140625	2	434.759218	867.503883	-0.54476	-0.00023684	0.73073	0.00031769	0.18597	8.0851E-05	434.7594502813862	138.35	2.0585	138.12	137.54	139.6	-0.22697					104	41	4	0	0	0	0.64339	1	13850	13850		26.796	0	1	279250	+		51858	25155	42934	42965	56192	56192					0.06483159914296266
RVARGVPGG	9	Unmodified	_RVARGVPGG_					0	0	0			REV__ENST00000379359.3_1_13:42031701-42032475:+|nuORF	REV__ENST00000379359.3_1_13:42031701-42032475:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	434.7590637207031	2	434.759218	867.503883	-1.3377	-0.00058158	1.4594	0.00063449	0.12169	5.2907E-05	434.7597358333452	139.11	1.8707	138.05	137.63	139.51	-1.0595					91	37	4	0	0	0	0.64339	1	11499	11499		26.796	0	1	610970	+		51859	25155	42934	42965	56193	56193					0.06483159914296266
RVARTLHEVP	10	Unmodified	_RVARTLHEVP_					0	0	0			REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|69|2|sense	REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|69|2|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3414306640625	2	589.343646	1176.67274	-4.3129	-0.0025418	3.0093	0.0017735	-1.3036	-0.00076827	589.3453728975387	144.79	3.9151	143.81	141.71	145.63	-0.97299					242	78	5	0	0	0	0.72319	1	12103	12103		27.882	1.1893	1	192050	+		51860	28217	42935	42966	56194	56194					0.09147016757151505
RVASLKAHIML	11	Unmodified	_RVASLKAHIML_					0	0	0		nc|ENSG00000130856|Q9UL36|ZNF236;ENSG00000130856|ENST00000320610|ZNF236;ZNF236|p.C746Lfs*13|1|0.08|ENSG00000130856|chr18:76905359-76905360|-/CTAGCACTTTGGAAGGCCGAGG|frameshift_variant;ZNF236|p.L805Sfs*67|1|0.04|ENSG00000130856|chr18:76908440-76908441|-/AGTTCATTGCTGAATTCATTGTTCAT|frameshift_variant;nc|ENSG00000130856|Q9UL36-2|ZNF236;ENST00000583095.1_1_18:74563778-74587448:+|nuORF	nc|ENSG00000130856|Q9UL36|ZNF236	nc|ENSG00000130856|Q9UL36|ZNF236	MULTI-MSMS	OvCa9_classI_Rep3	3	619.86865234375	2	619.873725	1237.7329	-3.6059	-0.0022352	-3.3723	-0.0020904	-6.9782	-0.0043256	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.65947	4	12779	12695;12779;12827;12859		39.253	4.1008	1	664560			51861	4022	42936	42967	56195;56196;56197;56198	56196					0.12353991096006212
RVASLKAHIML	11	Unmodified	_RVASLKAHIML_					0	0	0		nc|ENSG00000130856|Q9UL36|ZNF236;ENSG00000130856|ENST00000320610|ZNF236;ZNF236|p.C746Lfs*13|1|0.08|ENSG00000130856|chr18:76905359-76905360|-/CTAGCACTTTGGAAGGCCGAGG|frameshift_variant;ZNF236|p.L805Sfs*67|1|0.04|ENSG00000130856|chr18:76908440-76908441|-/AGTTCATTGCTGAATTCATTGTTCAT|frameshift_variant;nc|ENSG00000130856|Q9UL36-2|ZNF236;ENST00000583095.1_1_18:74563778-74587448:+|nuORF	nc|ENSG00000130856|Q9UL36|ZNF236	nc|ENSG00000130856|Q9UL36|ZNF236	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.86962890625	2	619.873725	1237.7329	-3.1194	-0.0019336	-3.9204	-0.0024301	-7.0397	-0.0043637	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.67529	1	15117	15117		37.812	2.1932	1	806750			51862	4022	42936	42967	56199	56199					0.12353991096006212
RVASLKAHIML	11	Unmodified	_RVASLKAHIML_					0	0	0		nc|ENSG00000130856|Q9UL36|ZNF236;ENSG00000130856|ENST00000320610|ZNF236;ZNF236|p.C746Lfs*13|1|0.08|ENSG00000130856|chr18:76905359-76905360|-/CTAGCACTTTGGAAGGCCGAGG|frameshift_variant;ZNF236|p.L805Sfs*67|1|0.04|ENSG00000130856|chr18:76908440-76908441|-/AGTTCATTGCTGAATTCATTGTTCAT|frameshift_variant;nc|ENSG00000130856|Q9UL36-2|ZNF236;ENST00000583095.1_1_18:74563778-74587448:+|nuORF	nc|ENSG00000130856|Q9UL36|ZNF236	nc|ENSG00000130856|Q9UL36|ZNF236	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8673706054688	2	619.873725	1237.7329	-4.5979	-0.0028501	-2.182	-0.0013525	-6.7798	-0.0042026	619.8720691913712	155.19	0.9135	153.7	153.35	154.26	-1.4911					51	23	3	0	0	0	0.72473	1	15394	15394		19.104	1.6355	1	42254			51863	4022	42936	42967	56200	56200					0.12353991096006212
RVAVHARRA	9	Unmodified	_RVAVHARRA_					0	0	0			REV__ENST00000407315.5_1_2:242573437-242576781:-|nuORF	REV__ENST00000407315.5_1_2:242573437-242576781:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	518.3173217773438	2	518.317766	1034.62098	-0.27738	-0.00014377	-1.0283	-0.00053297	-1.3056	-0.00067674	518.317119052338	137.12	1.3347	136.9	136.16	137.49	-0.22697					65	27	3	0	0	0	0.67509	1	13646	13646		23.042	1.0826	1	143020	+		51864	25450	42937	42968	56201	56201					0.10505317853903762
RVAVNGLLR	9	Unmodified	_RVAVNGLLR_					0	0	0		ENSG00000160161|ENST00000291495|CILP2	ENSG00000160161|ENST00000291495|CILP2	ENSG00000160161|ENST00000291495|CILP2	MULTI-MSMS	OvCa99_classI_Rep5	1	499.31805419921875	2	499.3169	996.619247	0.089854	4.4866E-05	-0.61797	-0.00030856	-0.52811	-0.0002637	499.3165153465622	63.554	1.3305	63.554	63.257	64.588	0					79	32	4	0	0	0	0.071436	1	5735	5735		106.42	3.6419	1	10118000			51865	6041	42938	42969	56202	56202					0.12080264045278
RVAVVENGHKI	11	Unmodified	_RVAVVENGHKI_					0	0	0		tr|A0A7D6VPK6|A0A7D6VPK6_9CLOTHydroxyethylthiazolekinaseOS=ClostridiumintestinaleOX=36845GN=thiMPE=3SV=1	tr|A0A7D6VPK6|A0A7D6VPK6_9CLOTHydroxyethylthiazolekinaseOS=ClostridiumintestinaleOX=36845GN=thiMPE=3SV=1	tr|A0A7D6VPK6|A0A7D6VPK6_9CLOTHydroxyethylthiazolekinaseOS=ClostridiumintestinaleOX=36845GN=thiMPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3551635742188	2	611.356754	1220.69895	-2.725	-0.001666	1.4566	0.0008905	-1.2684	-0.00077546	611.3575283211214	150.83	4.6872	149.39	148.02	152.71	-1.4344					404	109	6	0	0	0	0.68021	3	14806	14806;15024;15036		36.447	5.2606	1	435030			51866	34778	42939	42970	56203;56204;56205	56203					0.09743285928607293
RVCGTGNK	8	Unmodified	_RVCGTGNK_					0	0	0		tr|A0A7D6W2E9|A0A7D6W2E9_9CLOTNH(3)-dependentNAD(+)synthetaseOS=ClostridiumintestinaleOX=36845GN=nadEPE=3SV=1	tr|A0A7D6W2E9|A0A7D6W2E9_9CLOTNH(3)-dependentNAD(+)synthetaseOS=ClostridiumintestinaleOX=36845GN=nadEPE=3SV=1	tr|A0A7D6W2E9|A0A7D6W2E9_9CLOTNH(3)-dependentNAD(+)synthetaseOS=ClostridiumintestinaleOX=36845GN=nadEPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	417.7176208496094	2	417.716162	833.41777	1.5603	0.00065178	1.3423	0.00056071	2.9027	0.0012125	417.7165732909185	155.81	4.0147	155.81	153.69	157.7	0					162	79	3	0	0	0	0.7224	1	18430	18430		38.806	5.3132	1	421790			51867	35428	42940	42971	56206	56206					-0.005601679827464068
RVDAKVYIL	9	Unmodified	_RVDAKVYIL_					0	0	0		ACSM5|p.V304_I305insY|1|0.06|ENSG00000183549|chr16:20424059-20424060|-/ATA|inframe_insertion	ACSM5|p.V304_I305insY|1|0.06|ENSG00000183549|chr16:20424059-20424060|-/ATA|inframe_insertion	ACSM5|p.V304_I305insY|1|0.06|ENSG00000183549|chr16:20424059-20424060|-/ATA|inframe_insertion	MULTI-MSMS	OvCa9_classI_Rep2	2	538.8263549804688	2	538.826766	1075.63898	0.036954	1.9912E-05	-1.0034	-0.00054068	-0.96648	-0.00052077	538.8262542166998	91.851	2.953	90.615	90.272	93.225	-1.2355					156	56	5	0	0	0	0.33652	1	8188	8188		58.782	0	1	2991400			51868	21	42941	42972	56207	56207					0.1041859526535518
RVDGLMLKFV	10	Unmodified	_RVDGLMLKFV_					0	0	0		ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	ENSG00000111647|ENST00000279907|BLTP3B	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3413696289062	2	589.341726	1176.6689	-2.3489	-0.0013843	4.346	0.0025613	1.9971	0.001177	589.3441165076871	144.49	4.0102	144.26	142.11	146.12	-0.22696					206	80	3	0	0	0	0.74374	1	14544	14544		25.574	1.0549	1	105920			51869	2836	42942	42973	56208	56208					0.08763210939059718
RVEERRLRK	9	Unmodified	_RVEERRLRK_					0	0	0		HERVH-int_dup395|chr1:229174781-229177850:+|1.6476935486843904|0.2234293350488721|2.88|410.0|128|2|anti-sense	HERVH-int_dup395|chr1:229174781-229177850:+|1.6476935486843904|0.2234293350488721|2.88|410.0|128|2|anti-sense	HERVH-int_dup395|chr1:229174781-229177850:+|1.6476935486843904|0.2234293350488721|2.88|410.0|128|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	414.5911560058594	3	414.589822	1240.74764	-0.3176	-0.00013168	3.6928	0.001531	3.3752	0.0013993	414.59131292590723	33.401	1.2917	30.691	30.42	31.712	-2.7097					57	25	3	0	0	0	0.58322	1	1194	1194		33.922	2.2874	1	132160			51870	14420	42943	42974	56209	56209					0.13689199288342024
RVEGIGFGL	9	Unmodified	_RVEGIGFGL_					0	0	0			REV__ENST00000293829.8_1_17:7342554-7342710:+|nuORF	REV__ENST00000293829.8_1_17:7342554-7342710:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	474.2635803222656	2	474.269084	946.523616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	162.91	1	161.28	160.78	161.78	-1.6336								0	0	0	0.17704	1	16101	16101		38.806	1.647	1		+		51871	24173	42944	42975	56210	56210					0.048214911343848144
RVEGRPKRL	9	Unmodified	_RVEGRPKRL_					0	0	0			REV__ENSG00000183090|ENST00000329798|FREM3	REV__ENSG00000183090|ENST00000329798|FREM3	MULTI-MSMS	OvCa99_classI_Rep5	1	556.3495483398438	2	555.846356	1109.67816	0.33885	0.00018835	-0.95172	-0.00052901	-0.61286	-0.00034066	555.8456850389377	20.798	0.20114	20.798	20.672	20.874	0					7	5	2	0	0	0	0.68424	1	53	53		21.96	0	1	35130	+		51872	22340	42945	42976	56211	56211					0.12770740339601616
RVELRTRRL	9	Unmodified	_RVELRTRRL_					0	0	0			REV__ENST00000417201.3_1_9:125027021-125027093:-|nuORF	REV__ENST00000417201.3_1_9:125027021-125027093:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.1955261230469	3	400.254551	1197.74182	0.29163	0.00011673	-0.6109	-0.00024451	-0.31927	-0.00012779	400.2543862716	34.627	0.28089	34.627	34.444	34.725	0					7	5	2	0	0	0	0.027462	1	1697	1697		33.922	16.454	1	16092	+		51873	25558	42946	42977	56212	56212					0.15086100776716194
RVERARGPPL	10	Unmodified	_RVERARGPPL_					0	0	0		ENSG00000120055|ENST00000625129|C10orf95	ENSG00000120055|ENST00000625129|C10orf95	ENSG00000120055|ENST00000625129|C10orf95	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8421630859375	2	575.843813	1149.67307	-2.8608	-0.0016474	1.7444	0.0010045	-1.1164	-0.00064289	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.74374	1	14595	14595		25.574	2.0514	1	356230			51874	3414	42947	42978	56213	56213					0.10422436476983421
RVERARGPPL	10	Unmodified	_RVERARGPPL_					0	0	0		ENSG00000120055|ENST00000625129|C10orf95	ENSG00000120055|ENST00000625129|C10orf95	ENSG00000120055|ENST00000625129|C10orf95	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.84375	2	575.843813	1149.67307	-1.5734	-0.00090602	0.62521	0.00036002	-0.94817	-0.000546	575.8439449675558	145.55	4.7888	144.12	142.78	147.57	-1.4357					360	93	6	0	0	0	0.66721	4	14525	14264;14343;14525;14538		34.173	4.6271	1	565210			51875	3414	42947	42978	56214;56215;56216;56217	56216					0.10422436476983421
RVERLRWRSI	10	Unmodified	_RVERLRWRSI_					0	0	0			REV__ENST00000517775.1_1_5:171519868-171520577:-|nuORF	REV__ENST00000517775.1_1_5:171519868-171520577:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	457.60687255859375	3	457.609105	1369.80549	-6.2056	-0.0028397	4.0929	0.0018729	-2.1127	-0.00096677	457.6108688134911	157.03	3.4081	155.86	154.91	158.32	-1.1707					147	80	2	0	0	0	0.818	1	13566	13566		16.717	0.18753	1	68588	+		51876	27017	42948	42979	56218	56218					0.13537461213786628
RVERVAALGLR	11	Unmodified	_RVERVAALGLR_					0	0	0		ENSG00000131242|ENST00000621161|RAB11FIP4	ENSG00000131242|ENST00000621161|RAB11FIP4	ENSG00000131242|ENST00000621161|RAB11FIP4	MULTI-MSMS	OvCa9_classI_Rep3	3	413.9259338378906	3	413.926322	1238.75714	1.8213	0.00075387	-1.8567	-0.00076853	-0.035421	-1.4662E-05	413.9254636200789	66.621	1.1121	63.711	63.454	64.566	-2.9107					51	21	3	0	0	0	0.72458	1	2763	2763		21.032	1.0355	1	150460			51877	4051	42949	42980	56219	56219					0.1473096757388248
RVFGGLPLL	9	Unmodified	_RVFGGLPLL_					0	0	0			REV__tr|A0A553SNW8|A0A553SNW8_NIACIZincmetalloproteaseOS=NialliacirculansOX=1397GN=rsePPE=3SV=1	REV__tr|A0A553SNW8|A0A553SNW8_NIACIZincmetalloproteaseOS=NialliacirculansOX=1397GN=rsePPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.3050537109375	2	486.30547	970.596387	0.78572	0.0003821	-1.2488	-0.0006073	-0.46308	-0.0002252	486.30477333878326	121.54	2.2543	120.51	120.01	122.27	-1.0286					108	42	4	0	0	0	0.52083	1	9322	9322		40.573	7.7602	1	892460	+		51878	30467	42950	42981	56220	56220					0.10991244927799926
RVFIGSGRVL	10	Unmodified	_RVFIGSGRVL_					0	0	0			REV__tr|A0A553SRH0|A0A553SRH0_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_01065PE=4SV=1	REV__tr|A0A553SRH0|A0A553SRH0_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_01065PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.8195190429688	2	552.337833	1102.66111	0.99845	0.00055148	1.7241	0.00095228	2.7225	0.0015038	552.338599136424	91.054	0.3562	91.054	90.899	91.255	0					14	8	2	0	0	0	0.026734	1	9794	9794		18.262	0	1	200640	+		51879	30729	42951	42982	56221	56221					0.1138881973381558
RVFIYWTL	8	Unmodified	_RVFIYWTL_					0	0	0		ENSG00000068650|ENST00000375645|ATP11A	ENSG00000068650|ENST00000375645|ATP11A	ENSG00000068650|ENST00000375645|ATP11A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.9642333984375	2	549.310752	1096.60695	0.63087	0.00034654	1.9256	0.0010577	2.5565	0.0014043	549.3116312947706	37.41	1.3447	34.518	34.142	35.487	-2.8925					68	26	4	0	0	0	0.028476	1	1349	1349		12.959	0	1	412270			51880	1393	42952	42983	56222	56222					0.06251227582242791
RVFLIVMDS	9	Oxidation (M)	_RVFLIVM(Oxidation (M))DS_		RVFLIVM(1)DS		RVFLIVM(48)DS	0	0	1		tr|A0A553SL15|A0A553SL15_NIACIPhosphopentomutaseOS=NialliacirculansOX=1397GN=deoBPE=3SV=1	tr|A0A553SL15|A0A553SL15_NIACIPhosphopentomutaseOS=NialliacirculansOX=1397GN=deoBPE=3SV=1	tr|A0A553SL15|A0A553SL15_NIACIPhosphopentomutaseOS=NialliacirculansOX=1397GN=deoBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	548.2953491210938	2	548.296985	1094.57942	-1.4493	-0.00079464	-1.4824	-0.00081281	-2.9317	-0.0016074	548.2961982412694	34.285	4.3001	31.575	31.119	35.419	-2.7097					197	86	6	0	0	0	0.44294	2	1425	1383;1425		47.916	12.162	1	2359300			51881	33675	42953	42984	56223;56224	56224		744			0.03590956259699851
RVFLIVMDS	9	Oxidation (M)	_RVFLIVM(Oxidation (M))DS_		RVFLIVM(1)DS		RVFLIVM(46)DS	0	0	1		tr|A0A553SL15|A0A553SL15_NIACIPhosphopentomutaseOS=NialliacirculansOX=1397GN=deoBPE=3SV=1	tr|A0A553SL15|A0A553SL15_NIACIPhosphopentomutaseOS=NialliacirculansOX=1397GN=deoBPE=3SV=1	tr|A0A553SL15|A0A553SL15_NIACIPhosphopentomutaseOS=NialliacirculansOX=1397GN=deoBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.29541015625	2	548.296985	1094.57942	0.52053	0.00028541	-4.0945	-0.002245	-3.574	-0.0019596	548.2950889669573	33.486	4.8857	30.698	30.11	34.996	-2.7881					278	97	6	0	0	0	0.46377	1	937	937		45.952	6.9305	1	7055400			51882	33675	42953	42984	56225	56225		744			0.03590956259699851
RVFPSPMRI	9	Unmodified	_RVFPSPMRI_					0	0	0		nc|ENSG00000154822|Q9UPR0-2|PLCL2;nc|ENSG00000154822|Q9UPR0-3|PLCL2;ENSG00000154822|ENST00000615277|PLCL2	nc|ENSG00000154822|Q9UPR0-2|PLCL2	nc|ENSG00000154822|Q9UPR0-2|PLCL2	MULTI-MSMS	OvCa99_classI_Rep5	1	551.8138427734375	2	551.813136	1101.61172	0.33628	0.00018556	-1.1597	-0.00063993	-0.8234	-0.00045436	551.8140587042992	81.263	0.50509	81.263	80.949	81.455	0					40	11	5	0	0	0	0.1149	1	8365	8365		93.143	26.714	1	3378100			51883	5756	42954	42985	56226	56226					0.06497788453361864
RVFPSPMRI	9	Unmodified	_RVFPSPMRI_					0	0	0		nc|ENSG00000154822|Q9UPR0-2|PLCL2;nc|ENSG00000154822|Q9UPR0-3|PLCL2;ENSG00000154822|ENST00000615277|PLCL2	nc|ENSG00000154822|Q9UPR0-2|PLCL2	nc|ENSG00000154822|Q9UPR0-2|PLCL2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	551.813136	1101.61172	0.021255	1.1729E-05	-1.9594	-0.0010812	-1.9381	-0.0010695	551.8099002034614	83.614	0.14463	80.951	80.877	81.022	-2.6629	-0.15616	-9.1991E-06	NaN	93.143	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14899			51884	5756	42954	42985							0.06497788453361864
RVFPYSVFY	9	Unmodified	_RVFPYSVFY_					0	0	0		nc|ENSG00000141458|O15118-2|NPC1;ENSG00000141458|ENST00000269228|NPC1	nc|ENSG00000141458|O15118-2|NPC1	nc|ENSG00000141458|O15118-2|NPC1	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3062133789062	2	589.305667	1176.59678	-0.88068	-0.00051899	0.71968	0.00042411	-0.161	-9.4879E-05	589.3059650893875	121.84	1.1381	121.64	121.3	122.43	-0.19719					63	22	4	0	0	0	0.33652	3	11778	11778;11784;11790		58.782	12.81	1	115590			51885	4917	42955	42986	56227;56228;56229	56227					0.015546198570064007
RVFPYSVFY	9	Unmodified	_RVFPYSVFY_					0	0	0		nc|ENSG00000141458|O15118-2|NPC1;ENSG00000141458|ENST00000269228|NPC1	nc|ENSG00000141458|O15118-2|NPC1	nc|ENSG00000141458|O15118-2|NPC1	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3052368164062	2	589.305667	1176.59678	0.1981	0.00011674	-0.096482	-5.6857E-05	0.10162	5.9884E-05	589.3055016640016	123.01	1.6103	121.97	121.47	123.08	-1.0377					75	30	4	0	0	0	0.33652	2	9487	9487;9493		58.782	18.004	1	176050			51886	4917	42955	42986	56230;56231	56230					0.015546198570064007
RVFPYSVFY	9	Unmodified	_RVFPYSVFY_					0	0	0		nc|ENSG00000141458|O15118-2|NPC1;ENSG00000141458|ENST00000269228|NPC1	nc|ENSG00000141458|O15118-2|NPC1	nc|ENSG00000141458|O15118-2|NPC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3051147460938	2	589.305667	1176.59678	-0.12482	-7.3557E-05	-0.043508	-2.564E-05	-0.16833	-9.9197E-05	589.3055291110799	123.33	1.8558	121.96	121.56	123.41	-1.3666					82	36	4	0	0	0	0.24951	3	11698	11661;11673;11698		68.787	19.345	1	145490			51887	4917	42955	42986	56232;56233;56234	56234					0.015546198570064007
RVFVVGVGMTK	11	Oxidation (M)	_RVFVVGVGM(Oxidation (M))TK_		RVFVVGVGM(1)TK		RVFVVGVGM(69)TK	0	0	1		nc|ENSG00000116171|P22307-3|SCP2;nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;ENST00000528311.5_1_1:53392996-53413692:+|nuORF;SCP2|p.I221Tfs*39|1|0.04|ENSG00000116171|chr1:52976757-52976757|T/-|frameshift_variant	nc|ENSG00000116171|P22307-3|SCP2	nc|ENSG00000116171|P22307-3|SCP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	604.8458251953125	2	604.844633	1207.67471	0.16416	9.9291E-05	-0.38793	-0.00023464	-0.22378	-0.00013535	604.8442422296927	69.192	1.4164	65.706	65.415	66.831	-3.4861					60	28	3	0	0	0	0.29406	1	5169	5169		68.846	22.389	1	315880			51888	3160	42956	42987	56235	56235		101			0.07918309450724337
RVFVVGVGMTK	11	Oxidation (M)	_RVFVVGVGM(Oxidation (M))TK_					0	0	1		nc|ENSG00000116171|P22307-3|SCP2;nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;ENST00000528311.5_1_1:53392996-53413692:+|nuORF;SCP2|p.I221Tfs*39|1|0.04|ENSG00000116171|chr1:52976757-52976757|T/-|frameshift_variant	nc|ENSG00000116171|P22307-3|SCP2	nc|ENSG00000116171|P22307-3|SCP2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	604.844633	1207.67471	-1.6276	-0.00098444	1.585	0.00095866	-0.042618	-2.5777E-05	604.8454491182596	68.205	1.2866	65.574	65.268	66.554	-2.631	-0.031351	0.0010269	NaN	68.846	65	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228740			51889	3160	42956	42987				101			0.07918309450724337
RVFVVGVGMTK	11	Oxidation (M)	_RVFVVGVGM(Oxidation (M))TK_					0	0	1		nc|ENSG00000116171|P22307-3|SCP2;nc|ENSG00000116171|P22307-7|SCP2;nc|ENSG00000116171|P22307-8|SCP2;ENSG00000116171|ENST00000371514|SCP2;ENST00000528311.5_1_1:53392996-53413692:+|nuORF;SCP2|p.I221Tfs*39|1|0.04|ENSG00000116171|chr1:52976757-52976757|T/-|frameshift_variant	nc|ENSG00000116171|P22307-3|SCP2	nc|ENSG00000116171|P22307-3|SCP2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	604.844633	1207.67471	2.5649	0.0015514	-3.2886	-0.0019891	-0.72369	-0.00043772	604.842729770718	68.35	0.80058	65.536	65.312	66.112	-2.8144	-0.069048	-0.0048686	NaN	68.846	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29520			51890	3160	42956	42987				101			0.07918309450724337
RVGALYLLY	9	Unmodified	_RVGALYLLY_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.316162109375	2	534.316035	1066.61752	-2.4439	-0.0013058	2.6422	0.0014118	0.19837	0.00010599	534.317334713177	119.53	1.2033	118.19	117.88	119.08	-1.3444					54	22	4	0	0	0	0.36502	1	11231	11231		55.504	5.4797	1	154360			51891	1040	42957	42988	56236	56236					0.08687210236666942
RVGALYLLY	9	Unmodified	_RVGALYLLY_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	534.316035	1066.61752	1.1906	0.00063616	-1.1313	-0.00060448	0.059277	3.1673E-05	534.3154104710402	119.28	1.3343	118.25	117.98	119.31	-1.0271	0.12638	-0.0018764	NaN	55.504	54	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	151180			51892	1040	42957	42988							0.08687210236666942
RVGFTYLLVL	10	Unmodified	_RVGFTYLLVL_					0	0	0		ENST00000470961.1_1_3:101405187-101405544:-|nuORF	ENST00000470961.1_1_3:101405187-101405544:-|nuORF	ENST00000470961.1_1_3:101405187-101405544:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	591.2965698242188	2	590.858067	1179.70158	2.9641	0.0017513	-1.5045	-0.00088892	1.4596	0.00086243	591.3584508676279	88.637	0.25217	88.637	88.508	88.76	0					6	5	2	0	0	0	0.026915	1	9428	9428		44.117	24.12	1	105870			51893	12373	42958	42989	56237	56237					0.118917413335339
RVGKGIYF	8	Unmodified	_RVGKGIYF_					0	0	0		EZR-PARP3|1|fusion;ENSG00000041880|ENST00000398755|PARP3;nc|ENSG00000041880|Q9Y6F1-2|PARP3	EZR-PARP3|1|fusion	EZR-PARP3|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	470.271484375	2	470.27417	938.533787	-2.3445	-0.0011025	-2.1165	-0.00099535	-4.461	-0.0020979	470.2730881944102	145.73	1.4391	145.51	145.08	146.52	-0.22696					62	28	4	0	0	0	0.74013	1	14700	14700		31.579	1.0753	1	115570			51894	14317	42959	42990	56238	56238					0.06206098859604481
RVGLNLVS	8	Unmodified	_RVGLNLVS_					0	0	0			REV__ENSG00000180638|ENST00000433844|SLC47A2	REV__ENSG00000180638|ENST00000433844|SLC47A2	MULTI-MSMS	OvCa9_classI_Rep4_	4	429.2632141113281	2	429.263802	856.513051	-0.2469	-0.00010599	0.063722	2.7354E-05	-0.18318	-7.8633E-05	429.26374368244154	41.185	2.2742	38.205	37.606	39.88	-2.9804					97	43	4	0	0	0	0.68714	1	1819	1819		45.952	0	1	644380	+		51895	22183	42960	42991	56239	56239					0.0790550847995064
RVGPVRSAM	9	Unmodified	_RVGPVRSAM_					0	0	0		TRIB1|p.A311Hfs*21|1|0.11|ENSG00000173334|chr8:125436282-125436283|-/CATTTATTGCAGTTCGTGTTAGTTTGTGAAATCAC|frameshift_variant;ENSG00000173334|ENST00000311922|TRIB1	TRIB1|p.A311Hfs*21|1|0.11|ENSG00000173334|chr8:125436282-125436283|-/CATTTATTGCAGTTCGTGTTAGTTTGTGAAATCAC|frameshift_variant	TRIB1|p.A311Hfs*21|1|0.11|ENSG00000173334|chr8:125436282-125436283|-/CATTTATTGCAGTTCGTGTTAGTTTGTGAAATCAC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	486.77423095703125	2	486.774011	971.533469	-0.59332	-0.00028881	0.25047	0.00012192	-0.34285	-0.00016689	486.77399973092326	40.314	0.77507	40.314	40.106	40.881	0					35	16	4	0	0	0	0.40667	1	2435	2435		51.335	12.083	1	1835100			51896	7368	42961	42992	56240	56240					0.0465635586811004
RVGRQLPVI	9	Unmodified	_RVGRQLPVI_					0	0	0			REV__ENST00000475470.1_1_3:9882101-9883869:-|nuORF	REV__ENST00000475470.1_1_3:9882101-9883869:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	519.3300170898438	2	519.33255	1036.65055	0.67622	0.00035118	-1.2042	-0.00062537	-0.52796	-0.00027419	519.3318594599918	71.111	1.2027	68.392	68.008	69.211	-2.7196					78	23	4	0	0	0	0.61208	1	3331	3331		30.504	0	1	1378400	+		51897	26354	42962	42993	56241	56241					0.13368837079360674
RVGVKISLG	9	Unmodified	_RVGVKISLG_					0	0	0		ENST00000468812.5_1_7:44841357-44841513:+|nuORF	ENST00000468812.5_1_7:44841357-44841513:+|nuORF	ENST00000468812.5_1_7:44841357-44841513:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.77294921875	2	464.800552	927.58655	-0.069394	-3.2254E-05	-0.65946	-0.00030652	-0.72885	-0.00033877	464.80010021523384	52.501	0.8771	52.501	52.038	52.915	0					37	19	2	0	0	0	0.027462	1	4174	4174		45.952	1.8352	1	386480			51898	12335	42963	42994	56242	56242					0.1198605692242154
RVGVTRFSSFK	11	Unmodified	_RVGVTRFSSFK_					0	0	0		chr5:104080124-104080908|177|13.67|0.02|9.35|+|1|NIHCOLE,NIHCOLE|1	chr5:104080124-104080908|177|13.67|0.02|9.35|+|1|NIHCOLE,NIHCOLE|1	chr5:104080124-104080908|177|13.67|0.02|9.35|+|1|NIHCOLE,NIHCOLE|1	MULTI-MSMS	OvCa9_classI_Rep3	3	642.3614501953125	2	642.364579	1282.7146	-6.9842	-0.0044864	2.8603	0.0018374	-4.1239	-0.002649	642.3673416053439	164.93	1.6323	163.53	162.84	164.47	-1.4083					217	58	5	0	0	0	0.7046	1	14408	14408		28.081	2.5074	1	189920			51899	493	42964	42995	56243	56243					0.08455572445632242
RVHAYIISY	9	Unmodified	_RVHAYIISY_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	OvCa9_classI_Rep2	2	561.3082275390625	2	561.308741	1120.60293	0.70024	0.00039305	-1.6143	-0.00090613	-0.91408	-0.00051308	561.3077792838703	79.336	1.6702	77.596	77.302	78.972	-1.7398					77	32	3	0	0	0	0.10363	4	6666	6660;6666;6671;6679		96.19	42.839	1	898010			51900	1044	42965	42996	56244;56245;56246;56247	56245					0.047451380885149774
RVHAYIISY	9	Unmodified	_RVHAYIISY_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	OvCa9_classI_Rep3	3	561.3090209960938	2	561.308741	1120.60293	-0.2889	-0.00016216	-0.19952	-0.00011199	-0.48842	-0.00027416	561.3085756062152	80.295	1.628	77.955	77.612	79.24	-2.3399					93	31	5	0	0	0	0.074342	4	4401	4389;4401;4406;4413		104.75	35.96	1	1271100			51901	1044	42965	42996	56248;56249;56250;56251	56249					0.047451380885149774
RVHAYIISY	9	Unmodified	_RVHAYIISY_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.3098754882812	2	561.308741	1120.60293	0.44824	0.0002516	-1.1944	-0.00067044	-0.74618	-0.00041884	561.3079340071565	80.543	1.8067	77.832	77.416	79.223	-2.7106					94	36	4	0	0	0	0.091859	3	6574	6574;6585;6605		99.375	46.166	1	1234300			51902	1044	42965	42996	56252;56253;56254	56252					0.047451380885149774
RVHCPIIPK	9	Unmodified	_RVHCPIIPK_					0	0	0		ENST00000393085.3_1_7:135612556-135612649:-|nuORF	ENST00000393085.3_1_7:135612556-135612649:-|nuORF	ENST00000393085.3_1_7:135612556-135612649:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	531.816162109375	2	531.815679	1061.6168	-1.6193	-0.00086116	3.9009	0.0020745	2.2816	0.0012134	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.59983	1	11586	11586		31.955	8.9124	1	178650			51903	11237	42966	42997	56255	56255					0.08846092315957321
RVHDYDMRV	9	Unmodified	_RVHDYDMRV_					0	0	0		nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	MULTI-MSMS	OvCa99_classI_Rep5	1	595.792724609375	2	595.790389	1189.56623	0.038033	2.2659E-05	-0.19228	-0.00011456	-0.15425	-9.1902E-05	595.7900611512293	44.923	0.70409	44.923	44.75	45.454	0					27	15	3	0	0	0	0.49652	1	3074	3074		42.864	2.0861	1	533800			51904	1706	42967	42998	56256	56256					-0.02097481799705747
RVHEVFRVGK	10	Unmodified	_RVHEVFRVGK_					0	0	0		ENST00000393094.6_1_11:107879697-107879871:+|nuORF	ENST00000393094.6_1_11:107879697-107879871:+|nuORF	ENST00000393094.6_1_11:107879697-107879871:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	409.57550048828125	3	409.575401	1225.70437	0.91978	0.00037672	-0.74383	-0.00030466	0.17595	7.2064E-05	409.5749714327195	45.439	1.4465	42.729	42.348	43.794	-2.7097					72	28	3	0	0	0	0.49342	3	2659	2640;2646;2659		55.084	12.746	1	196340			51905	11239	42968	42999	56257;56258;56259	56259					0.10055009511074786
RVHEVFRVGK	10	Unmodified	_RVHEVFRVGK_					0	0	0		ENST00000393094.6_1_11:107879697-107879871:+|nuORF	ENST00000393094.6_1_11:107879697-107879871:+|nuORF	ENST00000393094.6_1_11:107879697-107879871:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	409.575401	1225.70437	0.062842	2.5738E-05	0.076617	3.138E-05	0.13946	5.7119E-05	409.57526997317484	45.81	1.5055	42.772	42.491	43.996	-3.0385	0.021153	0.0007339	NaN	55.084	74	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171860			51906	11239	42968	42999							0.10055009511074786
RVHFLLERL	9	Unmodified	_RVHFLLERL_					0	0	0		ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	ENSG00000135966|ENST00000393359|TGFBRAP1	MULTI-MSMS	OvCa9_classI_Rep2	2	591.8567504882812	2	591.858932	1181.70331	-1.0559	-0.00062492	-2.3669	-0.0014009	-3.4228	-0.0020258	591.8573910777626	39.473	1.2899	36.763	36.459	37.749	-2.7097					73	25	4	0	0	0	0.51865	1	1948	1948		40.778	4.3314	1	212370			51907	4439	42969	43000	56260	56260					0.11972795142196446
RVHLPRSAPT	10	Unmodified	_RVHLPRSAPT_					0	0	0		SIGLEC10|p.A388Sfs*71|1|0.1|ENSG00000142512|chr19:51415350-51415351|-/G|frameshift_variant	SIGLEC10|p.A388Sfs*71|1|0.1|ENSG00000142512|chr19:51415350-51415351|-/G|frameshift_variant	SIGLEC10|p.A388Sfs*71|1|0.1|ENSG00000142512|chr19:51415350-51415351|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3294067382812	2	567.330539	1132.64652	-3.474	-0.0019709	2.1482	0.0012187	-1.3258	-0.00075219	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.71192	1	12293	12293		29.15	1.2673	1	458690			51908	32818	42970	43001	56261	56261					0.08550747585650242
RVHPVSTMI	9	Oxidation (M)	_RVHPVSTM(Oxidation (M))I_		RVHPVSTM(1)I		RVHPVSTM(93)I	0	0	1		ENST00000538451.1_1_11:18424358-18428825:+|nuORF;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	528.287841796875	2	528.286951	1054.55935	-0.0099549	-5.259E-06	-0.60405	-0.00031911	-0.61401	-0.00032437	528.2867138127506	46.163	1.7959	46.163	45.8	47.595	0					65	40	2	0	0	0	0.11471	1	3242	3242		93.195	47.244	1	1541000			51909	4286	42971	43002	56262	56262		138			0.03425205319717861
RVHPVSTMI	9	Unmodified	_RVHPVSTMI_					0	0	0		ENST00000538451.1_1_11:18424358-18428825:+|nuORF;nc|ENSG00000134333|P00338-4|LDHA;ENSG00000134333|ENST00000422447|LDHA;nc|ENSG00000134333|P00338-3|LDHA	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	ENST00000538451.1_1_11:18424358-18428825:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	520.289794921875	2	520.289494	1038.56443	-0.37765	-0.00019649	-0.12282	-6.3903E-05	-0.50047	-0.00026039	520.289331661458	57.259	1.4918	57.259	56.788	58.28	0					85	34	4	0	0	0	0.11471	1	4787	4787		93.195	21.818	1	13614000			51910	4286	42971	43003	56263	56263					0.046695091823494295
RVIAATHRNL	10	Unmodified	_RVIAATHRNL_					0	0	0		tr|A0A7D6VTH4|A0A7D6VTH4_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_21045PE=4SV=1	tr|A0A7D6VTH4|A0A7D6VTH4_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_21045PE=4SV=1	tr|A0A7D6VTH4|A0A7D6VTH4_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_21045PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8431396484375	2	575.843813	1149.67307	-4.018	-0.0023138	2.8816	0.0016594	-1.1364	-0.0006544	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.53885	1	12161	12161		49.442	8.6634	1	445630			51911	35117	42972	43004	56264	56264					0.10422436476983421
RVICVNYLVG	10	Carbamidomethyl (C)	_RVIC(Carbamidomethyl (C))VNYLVG_	RVIC(1)VNYLVG		RVIC(66)VNYLVG		0	1	0		nc|ENSG00000160917|O95639-3|CPSF4;nc|ENSG00000160917|O95639-2|CPSF4;ENSG00000160917|ENST00000292476|CPSF4;ENST00000484112.5_1_7:99037182-99048419:+|nuORF;ENST00000471455.1_1_7:99042440-99051625:+|nuORF	nc|ENSG00000160917|O95639-3|CPSF4	nc|ENSG00000160917|O95639-3|CPSF4	MULTI-MSMS	OvCa99_classI_Rep5	1	596.8305053710938	2	596.828983	1191.64341	-0.83032	-0.00049556	3.6754	0.0021936	2.8451	0.001698	596.8310259729451	36.908	0.63528	36.908	36.662	37.298	0					35	13	4	0	0	0	0.41408	1	1981	1981		66.429	8.1994	1	605560			51912	6103	42973	43005	56265	56265	59				0.055257364165981926
RVIDYAVKI	9	Unmodified	_RVIDYAVKI_					0	0	0		ENSG00000105379|ENST00000309244|ETFB	ENSG00000105379|ENST00000309244|ETFB	ENSG00000105379|ENST00000309244|ETFB	MSMS	OvCa99_classI_Rep5	1	538.8280639648438	2	538.826766	1075.63898	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.912	1	80.912	80.412	81.412	0								0	0	0	0.07114	1	8316	8316		75.043	3.1658	1				51913	2451	42974	43006	56266	56266					0.1041859526535518
RVIDYILDL	9	Unmodified	_RVIDYILDL_					0	0	0		ENSG00000117318|ENST00000374561|ID3	ENSG00000117318|ENST00000374561|ID3	ENSG00000117318|ENST00000374561|ID3	MULTI-MSMS	OvCa99_classI_Rep5	1	560.32568359375	2	560.324057	1118.63356	2.1233	0.0011897	0.36767	0.00020601	2.491	0.0013958	560.3241783878202	138.32	0.81566	138.32	138.02	138.83	0					43	16	4	0	0	0	0.12515	1	16149	16149		90.37	13.596	1	1854000			51914	3247	42975	43007	56267	56267					0.07898871682914432
RVIDYIPQN	9	Unmodified	_RVIDYIPQN_					0	0	0			REV__tr|A0A553SS09|A0A553SS09_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02045PE=4SV=1	REV__tr|A0A553SS09|A0A553SS09_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02045PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.8275146484375	2	559.303655	1116.59276	-0.41679	-0.00023311	-3.4201	-0.0019129	-3.8369	-0.002146	559.3017679461649	28.104	0.24907	28.104	27.991	28.24	0					7	4	2	0	0	0	0.027462	1	881	881		29.15	12.676	1	48693	+		51915	30787	42976	43008	56268	56268					0.03912530363299993
RVINGLSTEFE	11	Unmodified	_RVINGLSTEFE_					0	0	0			REV__chr2:61972026-62000701|117|22.18|0.65|5.09|+|0|TE_info:AluJb,AluJb_dup14613,Alu,SINE,donor,+,61971839,61972026|None,COMMD1|2	REV__chr2:61972026-62000701|117|22.18|0.65|5.09|+|0|TE_info:AluJb,AluJb_dup14613,Alu,SINE,donor,+,61971839,61972026|None,COMMD1|2	MULTI-MSMS	OvCa9_classI_Rep4_	4	632.83251953125	2	632.830234	1263.64592	0.2481	0.000157	0.32159	0.00020351	0.56968	0.00036051	632.8304503776129	61.702	1.1501	58.244	58.01	59.16	-3.4577					59	23	3	0	0	0	0.52842	1	4253	4253		51.193	6.8155	1	604520	+		51916	15827	42977	43009	56269	56269					0.024638633552967804
RVINGLSTEFE	11	Unmodified	_RVINGLSTEFE_					0	0	0			REV__chr2:61972026-62000701|117|22.18|0.65|5.09|+|0|TE_info:AluJb,AluJb_dup14613,Alu,SINE,donor,+,61971839,61972026|None,COMMD1|2	REV__chr2:61972026-62000701|117|22.18|0.65|5.09|+|0|TE_info:AluJb,AluJb_dup14613,Alu,SINE,donor,+,61971839,61972026|None,COMMD1|2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	632.830234	1263.64592	-1.7998	-0.001139	2.6455	0.0016741	0.84565	0.00053515	632.8318491586642	60.88	1.4669	58.109	57.659	59.126	-2.7702	-0.067172	0.0011134	NaN	51.193	65	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238850	+		51917	15827	42977	43009							0.024638633552967804
RVINGLSTEFE	11	Unmodified	_RVINGLSTEFE_					0	0	0			REV__chr2:61972026-62000701|117|22.18|0.65|5.09|+|0|TE_info:AluJb,AluJb_dup14613,Alu,SINE,donor,+,61971839,61972026|None,COMMD1|2	REV__chr2:61972026-62000701|117|22.18|0.65|5.09|+|0|TE_info:AluJb,AluJb_dup14613,Alu,SINE,donor,+,61971839,61972026|None,COMMD1|2	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	632.830234	1263.64592	0.2481	0.000157	0.32159	0.00020351	0.56968	0.00036051	632.8304503776129	61.702	1.1501	58.244	58.01	59.16	-3.4577	0.067172	-0.0018278	NaN	51.193	59	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	604520	+		51918	15827	42977	43009							0.024638633552967804
RVIPARLDPFV	11	Unmodified	_RVIPARLDPFV_					0	0	0			REV__ENST00000463418.5_1_2:158157328-158158798:+|nuORF;REV__ENSG00000136542|ENST00000259056|GALNT5	REV__ENST00000463418.5_1_2:158157328-158158798:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8829345703125	2	641.885147	1281.75574	-5.3554	-0.0034376	1.3541	0.00086916	-4.0013	-0.0025684	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.69081	1	13211	13211		32.812	2.4947	1	804890	+		51919	26128;19392	42978	43010	56270	56270					0.1261333348509197
RVIPVLLQL	9	Unmodified	_RVIPVLLQL_					0	0	0		ENSG00000000457|ENST00000367771|SCYL3;nc|ENSG00000000457|Q8IZE3|SCYL3	ENSG00000000457|ENST00000367771|SCYL3	ENSG00000000457|ENST00000367771|SCYL3	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.8531494140625	2	525.855327	1049.6961	-2.3923	-0.001258	2.3094	0.0012144	-0.082867	-4.3576E-05	525.856409395684	147.69	1.4012	146.25	145.88	147.28	-1.4351					56	27	3	0	0	0	0.71901	1	14580	14580		11.511	0	1	76184			51920	800	42979	43011	56271	56271					0.17324062541752028
RVIRLSSLN	9	Unmodified	_RVIRLSSLN_					0	0	0		nc|ENSG00000111731|Q86YS7|C2CD5;nc|ENSG00000111731|Q86YS7-2|C2CD5;ENSG00000111731|ENST00000446597|C2CD5;nc|ENSG00000111731|Q86YS7-4|C2CD5;nc|ENSG00000111731|Q86YS7-5|C2CD5	nc|ENSG00000111731|Q86YS7|C2CD5	nc|ENSG00000111731|Q86YS7|C2CD5	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3648681640625	2	529.327465	1056.64038	0.6387	0.00033808	-2.436	-0.0012895	-1.7973	-0.00095137	529.3261181926499	159.28	0.48016	159.28	159.14	159.62	0					12	9	2	0	0	0	0.027462	1	18670	18670		37.159	6.6555	1	36573			51921	2848	42980	43012	56272	56272					0.11432229354136325
RVISLYLY	8	Unmodified	_RVISLYLY_					0	0	0			REV__ENSG00000180758|ENST00000377411|GPR157	REV__ENSG00000180758|ENST00000377411|GPR157	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.8168334960938	2	513.80276	1025.59097	-0.51766	-0.00026598	-3.9176	-0.0020129	-4.4352	-0.0022788	513.8007850859968	77.069	1.1503	74.253	73.627	74.777	-2.8165					37	23	2	0	0	0	0.028476	1	6070	6070		42.474	5.3154	1	35017	+		51922	22191	42981	43013	56273	56273					0.0791952134532039
RVISSVISV	9	Unmodified	_RVISSVISV_					0	0	0		ENSG00000162618|ENST00000370742|ADGRL4	ENSG00000162618|ENST00000370742|ADGRL4	ENSG00000162618|ENST00000370742|ADGRL4	MULTI-MSMS	OvCa99_classI_Rep5	1	480.298095703125	2	480.297842	958.581131	2.4379	0.0011709	-0.65877	-0.00031641	1.7791	0.00085452	480.29737332999724	87.749	0.75216	87.749	87.546	88.298	0					36	17	3	0	0	0	0.38969	1	9300	9300		52.937	3.4952	1	1368800			51923	6204	42982	43014	56274	56274					0.10018333339951369
RVKCAVLAW	9	Unmodified	_RVKCAVLAW_					0	0	0		tr|A0A7D7A251|A0A7D7A251_9CLOTSUFsystemNifUfamilyFe-SclusterassemblyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15245PE=3SV=1	tr|A0A7D7A251|A0A7D7A251_9CLOTSUFsystemNifUfamilyFe-SclusterassemblyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15245PE=3SV=1	tr|A0A7D7A251|A0A7D7A251_9CLOTSUFsystemNifUfamilyFe-SclusterassemblyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15245PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3041381835938	2	523.302404	1044.59026	-2.1228	-0.0011108	4.4262	0.0023162	2.3034	0.0012054	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.64339	1	11302	11302		26.796	0.10319	1	183010			51924	36062	42983	43015	56275	56275					0.06974403424624143
RVKCFLLF	8	Unmodified	_RVKCFLLF_					0	0	0			REV__ENST00000528318.5_1_8:42716773-42751856:-|nuORF	REV__ENST00000528318.5_1_8:42716773-42751856:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.8379516601562	2	513.301873	1024.58919	1.2298	0.00063128	1.5598	0.00080062	2.7896	0.0014319	513.3033353689219	111.63	0.40889	111.63	111.42	111.83	0					12	8	2	0	0	0	0.028476	1	12688	12688		33.516	18.851	1	57049	+		51925	27165	42984	43016	56276	56276					0.07788189055713701
RVKKLNEI	8	Unmodified	_RVKKLNEI_					0	0	0		ENSG00000131981|ENST00000254301|LGALS3;ENST00000556438.6_1_14:55604729-55611986:+|nuORF;tr|A0A553SPS2|A0A553SPS2_NIACIL-glyceraldehyde3-phosphatereductaseOS=NialliacirculansOX=1397GN=CEQ21_26790PE=3SV=1	ENSG00000131981|ENST00000254301|LGALS3	ENSG00000131981|ENST00000254301|LGALS3	MULTI-MSMS	OvCa99_classI_Rep5	1	500.31866455078125	2	500.319109	998.623664	-0.71366	-0.00035706	-0.29193	-0.00014606	-1.0056	-0.00050311	500.318994332521	33.849	0.90669	33.849	33.632	34.539	0					33	18	2	0	0	0	0.42649	1	1578	1578		84.916	2.675	1	2314400			51926	4103	42985	43017	56277	56277					0.12429728468180201
RVKKSGVSV	9	Unmodified	_RVKKSGVSV_					0	0	0		ENSG00000074755|ENST00000381638|ZZEF1;nc|ENSG00000074755|O43149-3|ZZEF1;ENST00000574474.1_1_17:3979912-4046255:-|nuORF	ENSG00000074755|ENST00000381638|ZZEF1	ENSG00000074755|ENST00000381638|ZZEF1	MULTI-MSMS	OvCa99_classI_Rep5	1	480.3029479980469	2	480.303458	958.592364	-0.88597	-0.00042554	0.3781	0.0001816	-0.50787	-0.00024393	480.303542746449	27.516	0.7499	27.516	27.291	28.041	0					32	14	4	0	0	0	0.40818	2	811	811;836		51.193	10.415	1	1097000			51927	1517	42986	43018	56278;56279	56278					0.11141155434097527
RVKLGVDTI	9	Unmodified	_RVKLGVDTI_					0	0	0		ENSG00000167671|ENST00000301281|UBXN6;nc|ENSG00000167671|Q9BZV1-2|UBXN6;ENST00000592358.1_1_19:4448313-4452408:-|nuORF;ENST00000588238.1_1_19:4448313-4448511:-|nuORF	ENSG00000167671|ENST00000301281|UBXN6	ENSG00000167671|ENST00000301281|UBXN6	MULTI-MSMS	OvCa99_classI_Rep5	1	500.812255859375	2	500.811116	999.60768	-0.22192	-0.00011114	-0.17929	-8.9789E-05	-0.40121	-0.00020093	500.81099364848995	68.669	1.8113	68.669	68.398	70.21	0					85	43	5	0	0	0	0.11471	1	6502	6502		93.195	0	1	12174000			51928	6828	42987	43019	56280	56280					0.10786022231286552
RVKLPSGSK	9	Unmodified	_RVKLPSGSK_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000525232.5_1_8:146016635-146016902:-|nuORF;ENST00000430538.1_1_21:31635868-31636186:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.3036804199219	2	486.303458	970.592364	0.91147	0.00044325	-1.0195	-0.00049581	-0.10807	-5.2556E-05	486.302842900714	35.165	1.4521	32.316	31.987	33.439	-2.849					75	28	4	0	0	0	0.1804	1	1106	1106		79.713	2.395	1	400850			51929	6116	42988	43020	56281	56281					0.10589155434104214
RVKLPSGSKK	10	Unmodified	_RVKLPSGSKK_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000525232.5_1_8:146016635-146016902:-|nuORF;ENST00000430538.1_1_21:31635868-31636186:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	OvCa9_classI_Rep2	2	550.3507080078125	2	550.35094	1098.68733	0.35656	0.00019624	-0.53554	-0.00029473	-0.17897	-9.8497E-05	550.3505114476876	31.822	1.2363	29.112	28.789	30.025	-2.7097					67	24	4	0	0	0	0.072307	7	1000	984;989;994;1000;1005;1012;1024		120.87	41.156	1	380910			51930	6116	42989	43021	56282;56283;56284;56285;56286;56287;56288	56285					0.14193088905290097
RVKNNDPEM	9	Unmodified	_RVKNNDPEM_					0	0	0		nc|ENSG00000163431|P29536-2|LMOD1;ENSG00000163431|ENST00000367288|LMOD1	nc|ENSG00000163431|P29536-2|LMOD1	nc|ENSG00000163431|P29536-2|LMOD1	MULTI-MSMS	OvCa99_classI_Rep5	1	551.7688598632812	2	551.769123	1101.52369	-0.48164	-0.00026575	-0.67315	-0.00037143	-1.1548	-0.00063718	551.7685741672688	29.661	0.34883	29.661	29.536	29.885	0					15	6	3	0	0	0	0.27001	1	1078	1078		66.429	6.311	1	460650			51931	6304	42990	43022	56289	56289					-0.023008769279385888
RVKNRNVKR	9	Unmodified	_RVKNRNVKR_					0	0	0		ENST00000244230.6_1_2:71360149-71360302:+|nuORF	ENST00000244230.6_1_2:71360149-71360302:+|nuORF	ENST00000244230.6_1_2:71360149-71360302:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	585.3618774414062	2	585.37053	1168.72651	-1.8124	-0.001061	-4.2656	-0.002497	-6.0781	-0.0035579	585.3678346208208	127.3	0.59527	125.86	125.54	126.14	-1.4357					28	11	3	0	0	0	0.6653	1	12140	12140		24.203	0.68005	1	39817			51932	9768	42991	43023	56290	56290					0.14889233979511118
RVKPGDVAV	9	Unmodified	_RVKPGDVAV_					0	0	0		ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	ENSG00000148606|ENST00000372371|POLR3A	MULTI-MSMS	OvCa99_classI_Rep5	1	470.78253173828125	2	470.782359	939.550165	-0.031714	-1.4931E-05	-0.13549	-6.3787E-05	-0.16721	-7.8718E-05	470.78226668677314	43.165	1.0691	43.165	42.926	43.995	0					34	24	2	0	0	0	0.1804	1	2820	2820		79.713	18.741	1	4084300			51933	5418	42992	43024	56291	56291					0.07797180025715988
RVKQRINTY	9	Unmodified	_RVKQRINTY_					0	0	0		ENST00000519559.1_1_8:52732913-52752014:-|nuORF;nc|ENSG00000168300|Q96MG8-2|PCMTD1;ENSG00000168300|ENST00000522514|PCMTD1	ENST00000519559.1_1_8:52732913-52752014:-|nuORF	ENST00000519559.1_1_8:52732913-52752014:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3418579101562	2	589.343646	1176.67274	-5.1334	-0.0030254	3.8974	0.0022969	-1.236	-0.00072842	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.65476	1	12480	12480		25.45	4.5032	1	589610			51934	6890	42993	43025	56292	56292					0.09147016757151505
RVKRGLGAGL	10	Unmodified	_RVKRGLGAGL_					0	0	0		ENST00000556095.5_1_14:96830043-96830214:+|nuORF	ENST00000556095.5_1_14:96830043-96830214:+|nuORF	ENST00000556095.5_1_14:96830043-96830214:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.8309326171875	2	513.830175	1025.6458	0.18498	9.5051E-05	-0.76667	-0.00039394	-0.58169	-0.00029889	513.8295446542414	38.39	1.289	35.463	35.057	36.346	-2.9264					52	25	3	0	0	0	0.80532	1	1499	1499		18.324	0.95945	1	126690			51935	13654	42994	43026	56293	56293					0.13399952936606496
RVKSIFKR	8	Unmodified	_RVKSIFKR_					0	0	0		tr|A0A7D6VM05|A0A7D6VM05_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_13450PE=4SV=1	tr|A0A7D6VM05|A0A7D6VM05_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_13450PE=4SV=1	tr|A0A7D6VM05|A0A7D6VM05_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_13450PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.3161010742188	2	517.335093	1032.65563	-0.6786	-0.00035106	0.63546	0.00032874	-0.043139	-2.2317E-05	517.3376810557139	40.643	0.18698	40.643	40.479	40.666	0					5	3	2	0	0	0	0.028476	1	2482	2482		51.335	8.9393	1	11795			51936	34642	42995	43027	56294	56294					0.1406114094197619
RVKSKGKSYCA	11	Unmodified	_RVKSKGKSYCA_					0	0	0			REV__ENST00000509486.2_1_5:9237921-9318506:-|nuORF	REV__ENST00000509486.2_1_5:9237921-9318506:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	613.368408203125	2	613.837339	1225.66013	0.50559	0.00031035	-1.6897	-0.0010372	-1.1842	-0.00072688	613.8360167300192	60.949	0.19897	57.519	57.345	57.544	-3.43					5	3	2	0	0	0	0.025594	1	4142	4142		41.427	27.289	1	37471	+		51937	26927	42996	43028	56295	56295					0.05632237302620524
RVKTNLPIFK	10	Unmodified	_RVKTNLPIFK_					0	0	0		nc|ENSG00000112335|O60493-3|SNX3;ENSG00000112335|ENST00000230085|SNX3	nc|ENSG00000112335|O60493-3|SNX3	nc|ENSG00000112335|O60493-3|SNX3	MULTI-MSMS	OvCa9_classI_Rep3	3	405.92376708984375	3	405.923919	1214.74993	1.7255	0.00070044	-1.8213	-0.00073932	-0.095784	-3.8881E-05	405.9230675134814	68.412	1.0012	65.598	64.962	65.964	-2.8143					51	19	4	0	0	0	0.52162	3	2979	2973;2979;2984		51.528	19.146	1	168270			51938	2899	42997	43029	56296;56297;56298	56297					0.15114234973452767
RVKTNVPVK	9	Unmodified	_RVKTNVPVK_					0	0	0		ENSG00000125970|ENST00000246194|RALY;nc|ENSG00000125970|Q9UKM9-2|RALY;RALY|p.S176Afs*7|1|0.08|ENSG00000125970|chr20:34076020-34076020|C/-|frameshift_variant;ENST00000488227.1_1_20:32663701-32663851:+|nuORF	ENSG00000125970|ENST00000246194|RALY	ENSG00000125970|ENST00000246194|RALY	MULTI-MSMS	OvCa9_classI_Rep2	2	520.831787109375	2	520.832383	1039.65021	-1.7147	-0.00089306	1.5599	0.00081247	-0.15473	-8.0591E-05	520.8330898919645	35.189	1.0925	32.479	32.158	33.251	-2.7097					31	21	2	0	0	0	0.40818	1	1411	1411		51.193	7.0759	1	104890			51939	3757	42998	43030	56299	56299					0.13197417359515384
RVKTNVPVK	9	Unmodified	_RVKTNVPVK_					0	0	0		ENSG00000125970|ENST00000246194|RALY;nc|ENSG00000125970|Q9UKM9-2|RALY;RALY|p.S176Afs*7|1|0.08|ENSG00000125970|chr20:34076020-34076020|C/-|frameshift_variant;ENST00000488227.1_1_20:32663701-32663851:+|nuORF	ENSG00000125970|ENST00000246194|RALY	ENSG00000125970|ENST00000246194|RALY	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.8323364257812	2	520.832383	1039.65021	0.47212	0.0002459	-0.57007	-0.00029691	-0.097954	-5.1017E-05	520.8319236577051	34.709	1.453	31.921	31.598	33.051	-2.7881					73	28	4	0	0	0	0.1944	4	1059	1035;1046;1059;1071		77.318	17.199	1	375290			51940	3757	42998	43030	56300;56301;56302;56303	56302					0.13197417359515384
RVKTTQMFI	9	Oxidation (M)	_RVKTTQM(Oxidation (M))FI_		RVKTTQM(1)FI		RVKTTQM(99)FI	0	0	1		chr7:131511433-131522721|112|13.54|0.05|8.0|-|2|TE_info:L1MB8,L1MB8_dup6767,L1,LINE,donor,-,131522721,131523276|PODXL,None|8	chr7:131511433-131522721|112|13.54|0.05|8.0|-|2|TE_info:L1MB8,L1MB8_dup6767,L1,LINE,donor,-,131522721,131523276|PODXL,None|8	chr7:131511433-131522721|112|13.54|0.05|8.0|-|2|TE_info:L1MB8,L1MB8_dup6767,L1,LINE,donor,-,131522721,131523276|PODXL,None|8	MULTI-MSMS	OvCa99_classI_Rep5	1	570.3174438476562	2	570.315709	1138.61686	-0.66674	-0.00038025	3.0819	0.0017577	2.4152	0.0013774	570.3175200144186	33.849	0.85927	33.849	33.632	34.491	0					39	17	4	0	0	0	0.091859	1	1579	1579		99.375	22.601	1	2267700			51941	523	42999	43031	56304	56304		12			0.05310047525290429
RVKVEPAV	8	Unmodified	_RVKVEPAV_					0	0	0		FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant;FLNB|p.S2513Rfs*5|1|0.04|ENSG00000136068|chr3:58169710-58169711|-/GATTC|frameshift_variant;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;FLNB|p.T1593Ifs*40|1|0.08|ENSG00000136068|chr3:58136084-58136085|-/TCTATCAAGTC|frameshift_variant;nc|ENSG00000136068|O75369-7|FLNB	FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant	FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	449.2795715332031	2	449.279452	896.544351	-0.72804	-0.00032709	0.93281	0.00041909	0.20477	9.1998E-05	449.2797132728133	43.715	0.72588	43.715	43.27	43.995	0					37	16	3	0	0	0	0.64026	1	2917	2917		55.504	4.1688	1	770430			51942	4455	43000	43032	56305	56305					0.09194081514044683
RVLAEAGATVI	11	Unmodified	_RVLAEAGATVI_					0	0	0		tr|A0A7D6ZUX4|A0A7D6ZUX4_9CLOTSDRfamilyNAD(P)-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12045PE=3SV=1	tr|A0A7D6ZUX4|A0A7D6ZUX4_9CLOTSDRfamilyNAD(P)-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12045PE=3SV=1	tr|A0A7D6ZUX4|A0A7D6ZUX4_9CLOTSDRfamilyNAD(P)-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12045PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.3279418945312	2	550.327131	1098.63971	1.1776	0.00064806	-1.611	-0.00088659	-0.43344	-0.00023853	550.3261861557347	85.082	1.568	82.435	82.025	83.593	-2.6463					91	31	4	0	0	0	0.5804	1	7155	7155		46.457	3.5925	1	1352000			51943	35784	43001	43033	56306	56306					0.09433389914420331
RVLALRLTK	9	Unmodified	_RVLALRLTK_					0	0	0			REV__ENST00000307750.4_1_9:37441572-37441614:-|nuORF	REV__ENST00000307750.4_1_9:37441572-37441614:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.3292846679688	2	535.36385	1068.71315	-0.71973	-0.00038532	0.11542	6.1789E-05	-0.60432	-0.00032353	535.3636572088737	59.481	0.88396	56.089	55.805	56.689	-3.392					35	17	3	0	0	0	0.027462	1	4030	4030		20.947	0	1	80069	+		51944	24312	43002	43034	56307	56307					0.1815398314754475
RVLAVVVLE	9	Unmodified	_RVLAVVVLE_					0	0	0			REV__ENST00000565181.1_1_15:72766821-72767304:-|nuORF	REV__ENST00000565181.1_1_15:72766821-72767304:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.3093566894531	2	499.32386	996.633166	1.6871	0.0008424	-0.047697	-2.3816E-05	1.6394	0.00081859	499.32379618508634	120.03	0.4866	120.03	119.79	120.27	0					15	10	2	0	0	0	0.027462	1	13781	13781		29.15	0	1	90984	+		51945	27679	43003	43035	56308	56308					0.1347149675370929
RVLDALVAREK	11	Unmodified	_RVLDALVAREK_					0	0	0		ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	MULTI-MSMS	OvCa9_classI_Rep3	3	423.9261779785156	3	423.9261	1268.75647	1.5814	0.00067041	-1.7487	-0.00074131	-0.16722	-7.089E-05	423.92531048805483	66.997	1.8092	64.109	63.729	65.538	-2.8873					104	35	5	0	0	0	0.28898	9	2790	2784;2790;2797;2802;2808;2814;2821;2828;2834		69.216	23.388	1	412180			51946	7915	43004	43036	56309;56310;56311;56312;56313;56314;56315;56316;56317	56310					0.13284128134182538
RVLDALVAREK	11	Unmodified	_RVLDALVAREK_					0	0	0		ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	MULTI-MATCH	OvCa9_classI_Rep2	2		3	423.9261	1268.75647	0.083027	3.5197E-05	-0.1865	-7.9063E-05	-0.10348	-4.3866E-05	423.9259586806102	66.748	1.2401	64.052	63.766	65.006	-2.6958	-0.10687	0.0013567	NaN	69.216	78	24	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247450			51947	7915	43004	43036							0.13284128134182538
RVLDALVAREK	11	Unmodified	_RVLDALVAREK_					0	0	0		ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	ENSG00000181029|ENST00000596148|TRAPPC5	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	423.9261	1268.75647	1.2147	0.00051496	-1.422	-0.00060282	-0.20726	-8.7862E-05	423.92543136666006	67.805	1.3732	64.315	64.037	65.411	-3.4902	0.1561	-0.00021461	NaN	69.216	73	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	335200			51948	7915	43004	43036							0.13284128134182538
RVLDFDVKRK	10	Unmodified	_RVLDFDVKRK_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000480438.1_1_X:53564515-53565341:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	OvCa9_classI_Rep2	2	425.9219055175781	3	425.922578	1274.7459	-1.168	-0.0004975	1.3125	0.00055903	0.14448	6.1536E-05	425.92310380992353	54.918	1.5423	52.104	51.772	53.314	-2.8139					82	30	4	0	0	0	0.5492	1	3792	3792		48.188	8.3148	1	427660			51949	1754	43005	43037	56318	56318					0.11952145479745013
RVLDFDVKRK	10	Unmodified	_RVLDFDVKRK_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000480438.1_1_X:53564515-53565341:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	425.922578	1274.7459	-0.64591	-0.00027511	0.54693	0.00023295	-0.098982	-4.2159E-05	425.9227415071649	55.412	1.2661	52.118	51.854	53.12	-3.2944	0.0067156	-0.00071801	NaN	48.188	74	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	371110			51950	1754	43005	43037							0.11952145479745013
RVLEDEEGSK	10	Unmodified	_RVLEDEEGSK_					0	0	0		ENSG00000075914|ENST00000265564|EXOSC7;ENST00000461361.5_1_3:45016905-45052828:+|nuORF	ENSG00000075914|ENST00000265564|EXOSC7	ENSG00000075914|ENST00000265564|EXOSC7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	581.822021484375	2	581.290942	1160.56733	-2.5621	-0.0014893	1.4001	0.00081386	-1.162	-0.00067549	581.290985954233	49.211	0.26101	46.069	45.99	46.251	-3.1416					5	4	2	0	0	0	0.026867	1	2776	2776		28.081	0	1	11503			51951	1546	43006	43038	56319	56319					-0.0065298894980969635
RVLEKDSVTLK	11	Unmodified	_RVLEKDSVTLK_					0	0	0		ENST00000476031.1_1_1:161515507-161519517:-|nuORF;ENSG00000203747|ENST00000443193|FCGR3A	ENST00000476031.1_1_1:161515507-161519517:-|nuORF	ENST00000476031.1_1_1:161515507-161519517:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	429.9260559082031	3	429.925877	1286.7558	0.38049	0.00016358	-0.70629	-0.00030365	-0.3258	-0.00014007	429.92551755844187	52.109	1.8654	48.901	48.539	50.404	-3.208					90	36	4	0	0	0	0.46651	1	3101	3101		56.295	4.1281	1	475280			51952	8931	43007	43039	56320	56320					0.12389288694475908
RVLEKDSVTLK	11	Unmodified	_RVLEKDSVTLK_					0	0	0		ENST00000476031.1_1_1:161515507-161519517:-|nuORF;ENSG00000203747|ENST00000443193|FCGR3A	ENST00000476031.1_1_1:161515507-161519517:-|nuORF	ENST00000476031.1_1_1:161515507-161519517:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	429.925877	1286.7558	-1.6151	-0.00069436	1.53	0.00065777	-0.085109	-3.659E-05	429.926451301111	51.686	1.681	48.873	48.453	50.134	-2.8129	-0.013894	0.0010185	NaN	56.295	88	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174130			51953	8931	43007	43039							0.12389288694475908
RVLELNEPD	9	Unmodified	_RVLELNEPD_					0	0	0			REV__ENST00000598057.1_1_19:42461155-42461461:-|nuORF	REV__ENST00000598057.1_1_19:42461155-42461461:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.8468627929688	2	542.785296	1083.55604	2.246	0.0012191	3.7584	0.00204	6.0044	0.0032591	543.2881676228911	82.759	0.34326	82.759	82.522	82.865	0					10	7	2	0	0	0	0.027455	1	8594	8594		68.846	26.372	1	140330	+		51954	27988	43008	43040	56321	56321					0.01760233746722406
RVLELNEPD	9	Unmodified	_RVLELNEPD_					0	0	0			REV__ENST00000598057.1_1_19:42461155-42461461:-|nuORF	REV__ENST00000598057.1_1_19:42461155-42461461:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	542.785296	1083.55604	-0.83862	-0.00045519	8.0528	0.004371	7.2142	0.0039158	542.7889842181175	85.199	1.3338	82.979	82.202	83.536	-2.2204	0.016317	0.0006751	NaN	68.846	40	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49493	+		51955	27988	43008	43040							0.01760233746722406
RVLELSRLV	9	Unmodified	_RVLELSRLV_					0	0	0			REV__ENST00000261681.8_1_14:67799669-67799834:+|nuORF	REV__ENST00000261681.8_1_14:67799669-67799834:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	542.8468627929688	2	542.84549	1083.67643	2.1012	0.0011406	0.40392	0.00021927	2.5051	0.0013599	542.8450896234708	82.794	1.0191	82.794	82.101	83.12	0					50	23	4	0	0	0	0.40818	1	8594	8594		51.193	6.1705	1	1264700	+		51956	23956	43009	43041	56322	56322					0.1379368653099391
RVLESVQKK	9	Unmodified	_RVLESVQKK_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.8314819335938	2	543.835123	1085.65569	0.10719	5.8292E-05	-0.26489	-0.00014406	-0.1577	-8.5764E-05	543.8347456688027	32.137	1.2338	29.442	29.019	30.252	-2.6954					54	35	2	0	0	0	0.69913	1	763	763		18.262	2.6203	1	21584			51957	3836	43010	43042	56323	56323					0.11629096151318663
RVLGKTTRI	9	Unmodified	_RVLGKTTRI_					0	0	0			REV__ENSG00000110079|ENST00000337908|MS4A4A	REV__ENSG00000110079|ENST00000337908|MS4A4A	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.8038330078125	2	522.337833	1042.66111	-1.0092	-0.00052717	0.11399	5.9542E-05	-0.89525	-0.00046763	522.3377119469726	38.14	0.54531	38.14	37.94	38.486	0					21	10	3	0	0	0	0.027462	1	2141	2141		26.693	11.828	1	219740	+		51958	17970	43011	43043	56324	56324					0.14148819733782148
RVLGKTTRI	9	Unmodified	_RVLGKTTRI_					0	0	0			REV__ENSG00000110079|ENST00000337908|MS4A4A	REV__ENSG00000110079|ENST00000337908|MS4A4A	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	522.337833	1042.66111	-1.2415	-0.00064847	4.6594	0.0024338	3.4179	0.0017853	522.339590285308	40.915	0.62466	37.961	37.737	38.362	-2.9541	-0.089638	0.0043631	NaN	39.253	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18711	+		51959	17970	43011	43043							0.14148819733782148
RVLGPARPPCR	11	Unmodified	_RVLGPARPPCR_					0	0	0		ENST00000360466.6_1_1:1203371-1209084:-|nuORF	ENST00000360466.6_1_1:1203371-1209084:-|nuORF	ENST00000360466.6_1_1:1203371-1209084:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3497924804688	2	611.353491	1220.69243	-2.0282	-0.0012399	-2.2247	-0.0013601	-4.2529	-0.0026	611.3520273138611	126.24	1.2813	124.82	124.48	125.76	-1.4143					74	25	4	0	0	0	0.71789	1	12068	12068		23.523	2.6855	1	434950			51960	10773	43012	43044	56325	56325					0.09091069496230375
RVLIAAHGNNL	11	Unmodified	_RVLIAAHGNNL_					0	0	0		PGAM4|p.S189N|1|0.27|ENSG00000226784|chrX:77969073-77969073|C/T|missense_variant	PGAM4|p.S189N|1|0.27|ENSG00000226784|chrX:77969073-77969073|C/T|missense_variant	PGAM4|p.S189N|1|0.27|ENSG00000226784|chrX:77969073-77969073|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3411865234375	2	589.343646	1176.67274	-5.1334	-0.0030254	3.8974	0.0022969	-1.236	-0.00072842	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.67529	1	12355	12355		37.812	6.2817	1	589610			51961	15492	43013	43045	56326	56326					0.09147016757151505
RVLIARALML	10	Unmodified	_RVLIARALML_					0	0	0		tr|A0A553SPL8|A0A553SPL8_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_26580PE=4SV=1	tr|A0A553SPL8|A0A553SPL8_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_26580PE=4SV=1	tr|A0A553SPL8|A0A553SPL8_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_26580PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	578.3722534179688	2	578.373361	1154.73217	0.57424	0.00033213	-0.89069	-0.00051515	-0.31645	-0.00018303	578.3726690143817	115	1.1215	115	114.6	115.73	0					53	23	4	0	0	0	0.64063	2	13115	13115;13140		37.159	6.8414	1	387320			51962	34060	43014	43046	56327;56328	56327					0.16099196446930364
RVLIINTPS	9	Unmodified	_RVLIINTPS_					0	0	0		nc|ENSG00000197177|Q86SQ6-1|ADGRA1	nc|ENSG00000197177|Q86SQ6-1|ADGRA1	nc|ENSG00000197177|Q86SQ6-1|ADGRA1	MULTI-MSMS	OvCa9_classI_Rep2	2	506.8106384277344	2	506.811116	1011.60768	1.4081	0.00071364	-2.4174	-0.0012251	-1.0093	-0.00051151	506.809990859047	88.555	2.3705	87.187	86.69	89.061	-1.3676					168	47	5	0	0	0	0.42676	1	7809	7809		49.442	7.0454	1	5233500			51963	15248	43015	43047	56329	56329					0.10234022231293238
RVLIINTPS	9	Unmodified	_RVLIINTPS_					0	0	0		nc|ENSG00000197177|Q86SQ6-1|ADGRA1	nc|ENSG00000197177|Q86SQ6-1|ADGRA1	nc|ENSG00000197177|Q86SQ6-1|ADGRA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.8121643066406	2	506.811116	1011.60768	0.31561	0.00015995	-1.485	-0.00075259	-1.1694	-0.00059264	506.81045586251577	89.749	2.4253	87.174	86.704	89.129	-2.575					167	47	5	0	0	0	0.44568	1	7764	7764		47.657	1.7054	1	8441000			51964	15248	43015	43047	56330	56330					0.10234022231293238
RVLISNHVT	9	Unmodified	_RVLISNHVT_					0	0	0		nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000463900.5_1_2:74756150-74756756:-|nuORF;AUP1|p.F145Lfs*16|1|0.09|ENSG00000115307|chr2:74528841-74528842|AA/-|frameshift_variant	nc|ENSG00000115307|Q9Y679-3|AUP1	nc|ENSG00000115307|Q9Y679-3|AUP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.7876586914062	2	519.806365	1037.59818	-0.94015	-0.0004887	0.31183	0.00016209	-0.62832	-0.00032661	519.8064834149193	55.174	0.29173	55.174	55.023	55.315	0					15	6	4	0	0	0	0.027462	1	4502	4502		21.96	11.695	1	386090			51965	3084	43016	43048	56331	56331					0.08088253945743418
RVLKALGNT	9	Unmodified	_RVLKALGNT_					0	0	0		tr|A0A7D6ZZU2|A0A7D6ZZU2_9CLOTGlutaminesynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07620PE=3SV=1	tr|A0A7D6ZZU2|A0A7D6ZZU2_9CLOTGlutaminesynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07620PE=3SV=1	tr|A0A7D6ZZU2|A0A7D6ZZU2_9CLOTGlutaminesynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07620PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.30303955078125	2	486.303458	970.592364	0.91147	0.00044325	-1.0195	-0.00049581	-0.10807	-5.2556E-05	486.302842900714	35.165	1.4521	32.316	31.987	33.439	-2.849					75	28	4	0	0	0	0.48047	1	1095	1095		44.377	11.565	1	400850			51966	35972	43017	43049	56332	56332					0.10589155434081476
RVLKYANEV	9	Unmodified	_RVLKYANEV_					0	0	0		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;nc|ENSG00000167881|Q9UHB9-3|SRP68;ENST00000586859.1_1_17:74039843-74041464:-|nuORF	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	MULTI-MSMS	OvCa99_classI_Rep5	1	546.3143920898438	2	546.314023	1090.61349	-0.11518	-6.2925E-05	0.86441	0.00047224	0.74923	0.00040932	546.3145280336405	52.55	0.43739	52.55	52.347	52.784	0					24	9	4	0	0	0	0.36502	1	4123	4123		55.504	11.387	1	1133700			51967	6846	43018	43050	56333	56333					0.07181120742939129
RVLKYFTRSL	10	Unmodified	_RVLKYFTRSL_					0	0	0		ENST00000479767.1_1_9:139648952-139650038:-|nuORF;ENSG00000204001|ENST00000371688|LCN8;nc|ENSG00000204001|Q6JVE9|LCN8	ENST00000479767.1_1_9:139648952-139650038:-|nuORF	ENST00000479767.1_1_9:139648952-139650038:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8818969726562	2	641.885147	1281.75574	-4.6434	-0.0029805	0.6524	0.00041876	-3.991	-0.0025618	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.70152	1	15450	15450		30.318	2.2362	1	543390			51968	8943	43019	43051	56334	56334					0.12613333485114708
RVLKYFTRSL	10	Unmodified	_RVLKYFTRSL_					0	0	0		ENST00000479767.1_1_9:139648952-139650038:-|nuORF;ENSG00000204001|ENST00000371688|LCN8;nc|ENSG00000204001|Q6JVE9|LCN8	ENST00000479767.1_1_9:139648952-139650038:-|nuORF	ENST00000479767.1_1_9:139648952-139650038:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8832397460938	2	641.885147	1281.75574	-2.5182	-0.0016164	-1.9587	-0.0012572	-4.4768	-0.0028736	641.8839546837315	150.47	2.9704	149.03	147.78	150.75	-1.4344					235	64	4	0	0	0	0.79213	1	14757	14757		19.997	0.89325	1	344900			51969	8943	43019	43051	56335	56335					0.12613333485114708
RVLLDQVEGM	10	Unmodified	_RVLLDQVEGM_					0	0	0			REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.2755737304688	2	580.310623	1158.60669	0.69711	0.00040454	1.7443	0.0010122	2.4414	0.0014168	580.3113973990233	131.48	0.70029	131.48	131.25	131.95	0					19	14	2	0	0	0	0.02709	1	15271	15271		29.17	15.716	1	44536	+		51970	18651	43020	43052	56336	56336					0.03373439800043343
RVLLPEQVTL	10	Unmodified	_RVLLPEQVTL_					0	0	0		sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1;sp|P16784|ITP_HCMVAInnertegumentproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL47PE=1SV=2	sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1	sp|Q6SW85|ITP_HCMVMInnertegumentproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL47PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	584.356201171875	2	584.358431	1166.70231	-2.312	-0.0013511	-1.149	-0.00067141	-3.461	-0.0020225	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.72319	1	14615	14615		27.882	0	1	180810			51971	32898	43021	43053	56337	56337					0.1256253598260173
RVLNAVKHVSE	11	Unmodified	_RVLNAVKHVSE_					0	0	0			REV__tr|A0A553STK9|A0A553STK9_NIACIYhgE/Pipdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05330PE=4SV=1	REV__tr|A0A553STK9|A0A553STK9_NIACIYhgE/Pipdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05330PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	626.361328125	2	626.362036	1250.70952	-2.9019	-0.0018177	2.9867	0.0018707	0.084754	5.3086E-05	626.3637485969008	35.53	1.0444	32.82	32.553	33.597	-2.7097					51	20	4	0	0	0	0.70865	1	1459	1459		26.693	1.1189	1	112650	+		51972	30979	43022	43054	56338	56338					0.0941926858304214
RVLNKLGGVK	10	Unmodified	_RVLNKLGGVK_					0	0	0		ENSG00000177556|ENST00000313115|ATOX1	ENSG00000177556|ENST00000313115|ATOX1	ENSG00000177556|ENST00000313115|ATOX1	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.3563232421875	2	542.353483	1082.69241	-0.91707	-0.00049738	0.38619	0.00020945	-0.53087	-0.00028792	542.3535373937315	46.807	1.4737	43.734	43.45	44.923	-3.0724					66	28	4	0	0	0	0.44431	1	2476	2476		62.107	8.756	1	379770			51973	7692	43023	43055	56339	56339					0.15437392767898928
RVLPGLKV	8	Unmodified	_RVLPGLKV_					0	0	0		ENSG00000205220|ENST00000358514|PSMB10;ENST00000575556.1_1_16:67970119-67970555:-|nuORF	ENSG00000205220|ENST00000358514|PSMB10	ENSG00000205220|ENST00000358514|PSMB10	MULTI-MSMS	OvCa99_classI_Rep5	1	441.3017578125	2	441.300188	880.585822	0.96708	0.00042677	-1.0695	-0.00047196	-0.1024	-4.5189E-05	441.2996001374922	70.51	1.3015	70.51	70.246	71.548	0					65	32	3	0	0	0	0.65062	1	6750	6750		53.351	1.0523	1	9691500			51974	9059	43024	43056	56340	56340					0.14075262273365752
RVLPLPIF	8	Unmodified	_RVLPLPIF_					0	0	0		ENSG00000173991|ENST00000309889|TCAP	ENSG00000173991|ENST00000309889|TCAP	ENSG00000173991|ENST00000309889|TCAP	MULTI-MSMS	OvCa9_classI_Rep2	2	477.80963134765625	2	477.810388	953.606223	0.21295	0.00010175	-0.50532	-0.00024145	-0.29237	-0.0001397	477.8099772174769	124.62	1.9274	124.39	124.03	125.95	-0.23193					69	38	3	0	0	0	0.68312	3	12123	12123;12129;12135		46.766	2.2354	1	226270			51975	7431	43025	43057	56341;56342;56343	56341					0.12756432933178985
RVLPMLLVP	9	Unmodified	_RVLPMLLVP_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	nc|ENSG00000104133|Q96JI7-3|SPG11	MULTI-MSMS	OvCa9_classI_Rep3	3	519.3308715820312	2	519.33063	1036.64671	0.67622	0.00035118	2.4927	0.0012945	3.1689	0.0016457	519.3318594599918	71.111	1.2027	68.392	68.008	69.211	-2.7196					78	23	4	0	0	0	0.6959	1	3326	3326		19.36	0.25645	1	1378400			51976	2354	43026	43058	56344	56344					0.12985031261291624
RVLPPLRPLEL	11	Unmodified	_RVLPPLRPLEL_					0	0	0		ENST00000585553.5_1_17:43213778-43213988:+|nuORF	ENST00000585553.5_1_17:43213778-43213988:+|nuORF	ENST00000585553.5_1_17:43213778-43213988:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	435.793701171875	3	434.946724	1301.81834	0.033502	1.4572E-05	0.11785	5.126E-05	0.15135	6.5831E-05	434.94631321125536	66.393	0.27962	66.393	66.212	66.491	0					10	6	2	0	0	0	0.025955	1	6146	6146		24.232	8.8987	1	97945			51977	14037	43027	43059	56345	56345					0.17950479553314835
RVLQLHRVF	9	Unmodified	_RVLQLHRVF_					0	0	0		ENSG00000253368|ENST00000522111|TRNP1	ENSG00000253368|ENST00000522111|TRNP1	ENSG00000253368|ENST00000522111|TRNP1	MULTI-MSMS	OvCa9_classI_Rep3	3	584.3558349609375	2	584.359099	1166.70365	-4.6254	-0.0027029	-0.004648	-2.7161E-06	-4.6301	-0.0027056	584.3589865391973	145.25	4.5766	144.28	142.9	147.48	-0.97299					233	91	4	0	0	0	0.59983	1	12129	12129		31.955	7.7521	1	156220			51978	9431	43028	43060	56346	56346					0.1269621486203505
RVLQPVLQL	9	Unmodified	_RVLQPVLQL_					0	0	0			REV__ENST00000565009.5_1_16:71790048-71805048:-|nuORF	REV__ENST00000565009.5_1_16:71790048-71805048:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	533.3399658203125	2	533.342584	1064.67061	-5.4486	-0.002906	1.332	0.00071043	-4.1166	-0.0021955	533.3431726379797	156.49	1.098	155.32	155.02	156.12	-1.1707					66	21	4	0	0	0	0.65476	1	13470	13470		25.45	0	1	385900	+		51979	27673	43029	43061	56347	56347					0.1408658801931324
RVLRDIWPP	9	Unmodified	_RVLRDIWPP_					0	0	0		ENST00000563591.5_1_16:28858025-28877416:+|nuORF	ENST00000563591.5_1_16:28858025-28877416:+|nuORF	ENST00000563591.5_1_16:28858025-28877416:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	576.353271484375	2	576.337833	1150.66111	-0.43258	-0.00024931	-1.1811	-0.00068069	-1.6136	-0.00093	576.3370311186757	71.907	0.14826	69.304	69.18	69.328	-2.6023					4	2	2	0	0	0	0.027411	1	3389	3389		64.207	7.7735	1	34444			51980	13787	43030	43062	56348	56348					0.09180819733774115
RVLSVNPKL	9	Unmodified	_RVLSVNPKL_					0	0	0		HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|93|3|sense	HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|93|3|sense	HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|93|3|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.8113403320312	2	513.326934	1024.63931	-0.3093	-0.00015877	-0.47612	-0.0002444	-0.78541	-0.00040317	513.3265389465224	63.785	1.0159	60.31	59.964	60.98	-3.475					62	20	4	0	0	0	0.027462	1	4477	4477		40.778	10.275	1	858480			51981	14446	43031	43063	56349	56349					0.12798014985219197
RVLTSVFTK	9	Unmodified	_RVLTSVFTK_					0	0	0		ENSG00000178573|ENST00000326043|MAF	ENSG00000178573|ENST00000326043|MAF	ENSG00000178573|ENST00000326043|MAF	MULTI-MSMS	OvCa9_classI_Rep3	3	525.8187255859375	2	525.818941	1049.62333	0.15618	8.2124E-05	-0.35157	-0.00018486	-0.19539	-0.00010274	525.8186113524076	68.803	1.3991	65.988	65.712	67.111	-2.8144					77	27	6	0	0	0	0.24899	3	3012	3012;3018;3025		68.846	17.653	1	355080			51982	7763	43032	43064	56350;56351;56352	56350					0.10050308748327552
RVLVARLGHF	10	Unmodified	_RVLVARLGHF_					0	0	0		nc|ENSG00000170468|Q9H6W3-2|RIOX1;ENSG00000170468|ENST00000304061|RIOX1	nc|ENSG00000170468|Q9H6W3-2|RIOX1	nc|ENSG00000170468|Q9H6W3-2|RIOX1	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3565063476562	2	584.359099	1166.70365	-0.50329	-0.0002941	-3.7984	-0.0022196	-4.3017	-0.0025137	584.3567763295431	142.42	4.015	140.98	138.81	142.83	-1.4427					242	77	4	0	0	0	0.76627	1	13920	13920		23.042	4.7181	1	214670			51983	7106	43033	43065	56353	56353					0.1269621486203505
RVLVPELAM	9	Unmodified	_RVLVPELAM_					0	0	0		ENSG00000115556|ENST00000450993|PLCD4	ENSG00000115556|ENST00000450993|PLCD4	ENSG00000115556|ENST00000450993|PLCD4	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.8161010742188	2	514.30207	1026.58959	-0.10043	-5.1652E-05	-3.3456	-0.0017206	-3.446	-0.0017723	514.3005581970817	75.011	0.58087	72.601	72.241	72.822	-2.4106					20	11	3	0	0	0	0.027441	1	3750	3750		49.442	0	1	30401			51984	3106	43034	43066	56354	56354					0.07735563984920191
RVLVVHEPL	9	Unmodified	_RVLVVHEPL_					0	0	0			REV__tr|A0A7D6ZHW7|A0A7D6ZHW7_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01360PE=4SV=1	REV__tr|A0A7D6ZHW7|A0A7D6ZHW7_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01360PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.3246459960938	2	531.326934	1060.63931	-4.6346	-0.0024625	0.52784	0.00028046	-4.1068	-0.0021821	531.3270951252447	152.87	1.0005	151.43	151.13	152.13	-1.435					54	23	3	0	0	0	0.67509	1	15113	15113		23.042	0	1	151040	+		51985	32039	43035	43067	56355	56355					0.1114201498521652
RVLWNKLAG	9	Unmodified	_RVLWNKLAG_					0	0	0		tr|A0A7D6ZQ70|A0A7D6ZQ70_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23185PE=4SV=1	tr|A0A7D6ZQ70|A0A7D6ZQ70_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23185PE=4SV=1	tr|A0A7D6ZQ70|A0A7D6ZQ70_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23185PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	528.8201904296875	2	528.819276	1055.624	-0.38216	-0.00020209	3.1415	0.0016613	2.7594	0.0014592	528.8208860535151	73.521	1.3868	71.034	70.382	71.769	-2.4873					75	27	4	0	0	0	0.55588	1	3576	3576		37.159	0	1	1135000			51986	35697	43036	43068	56356	56356					0.09841148188024818
RVMAIKPNK	9	Unmodified	_RVMAIKPNK_					0	0	0			REV__tr|A0A7D6VQC7|A0A7D6VQC7_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20460PE=4SV=1	REV__tr|A0A7D6VQC7|A0A7D6VQC7_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20460PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	528.8192749023438	2	528.820961	1055.62737	-0.71785	-0.00037962	0.30221	0.00015982	-0.41564	-0.0002198	528.8209765807109	73.376	1.4125	70.976	70.378	71.79	-2.3999					70	26	4	0	0	0	0.38529	3	5964	5964;5968;5995		53.351	6.2903	1	825140	+		51987	31313	43037	43069	56357;56358;56359	56357					0.10178074970372109
RVMAIKPNK	9	Unmodified	_RVMAIKPNK_					0	0	0			REV__tr|A0A7D6VQC7|A0A7D6VQC7_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20460PE=4SV=1	REV__tr|A0A7D6VQC7|A0A7D6VQC7_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20460PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	528.8204956054688	2	528.820961	1055.62737	-0.38216	-0.00020209	-0.045581	-2.4104E-05	-0.42774	-0.0002262	528.8208860535151	73.521	1.3868	71.034	70.382	71.769	-2.4873					75	27	4	0	0	0	0.33652	5	3581	3573;3581;3587;3593;3600		58.782	9.3404	1	1135000	+		51988	31313	43037	43069	56360;56361;56362;56363;56364	56361					0.10178074970372109
RVMAIKPNK	9	Unmodified	_RVMAIKPNK_					0	0	0			REV__tr|A0A7D6VQC7|A0A7D6VQC7_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20460PE=4SV=1	REV__tr|A0A7D6VQC7|A0A7D6VQC7_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20460PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.822021484375	2	528.820961	1055.62737	-0.96581	-0.00051074	0.37865	0.00020024	-0.58715	-0.0003105	528.8210701493393	74.689	0.96491	71.458	71.047	72.012	-3.2308					47	19	3	0	0	0	0.56889	1	5865	5865		35.618	0	1	974760	+		51989	31313	43037	43069	56365	56365					0.10178074970372109
RVMANVRERQR	11	Unmodified	_RVMANVRERQR_					0	0	0		ENSG00000122691|ENST00000242261|TWIST1	ENSG00000122691|ENST00000242261|TWIST1	ENSG00000122691|ENST00000242261|TWIST1	MULTI-MSMS	OvCa99_classI_Rep5	1	472.2669372558594	3	472.265121	1413.77353	0.18757	8.8582E-05	1.7384	0.00082098	1.926	0.00090956	472.2650375926746	31.596	0.54587	31.596	31.361	31.906	0					30	10	4	0	0	0	0.69308	1	1324	1324		32.034	1.895	1	551790			51990	3548	43038	43070	56366	56366					0.08319725468322758
RVMAPRALL	9	Unmodified	_RVMAPRALL_					0	0	0		nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000484378.1_1_6:31239370-31239848:-|nuORF	nc|ENSG00000204525|P10321-2|HLA-C	nc|ENSG00000204525|P10321-2|HLA-C	MULTI-MSMS	OvCa9_classI_Rep3	3	513.8159790039062	2	513.815679	1025.6168	-0.17927	-9.2113E-05	-1.2098	-0.00062159	-1.389	-0.0007137	513.8151245610528	74.922	2.6818	72.512	71.994	74.676	-2.4106					138	52	4	0	0	0	0.21395	4	3780	3756;3774;3780;3798		73.975	15	1	3292300			51991	8996	43039	43071	56367;56368;56369;56370	56369					0.10502092315959999
RVMAPRALL	9	Unmodified	_RVMAPRALL_					0	0	0		nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000484378.1_1_6:31239370-31239848:-|nuORF	nc|ENSG00000204525|P10321-2|HLA-C	nc|ENSG00000204525|P10321-2|HLA-C	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.8165283203125	2	513.815679	1025.6168	-0.22749	-0.00011689	-0.77517	-0.00039829	-1.0027	-0.00051518	513.8151298922651	75.964	2.6418	73.025	72.401	75.043	-2.9389					148	54	4	0	0	0	0.38529	1	6032	6032		53.351	10.487	1	2672000			51992	8996	43039	43071	56371	56371					0.10502092315959999
RVMEGTMPL	9	Unmodified	_RVMEGTMPL_					0	0	0			REV__HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|107|3|sense	REV__HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|107|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.3125610351562	2	517.262087	1032.50962	-0.36459	-0.00018859	-1.1219	-0.00058031	-1.4865	-0.0007689	517.2611425244958	66.596	0.20913	66.596	66.452	66.661	0					6	4	2	0	0	0	0.027462	1	6172	6172		33.516	0	1	187150	+		51993	28266	43040	43072	56372	56372					-0.005332456805717811
RVMKKRAHILY	11	Unmodified	_RVMKKRAHILY_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	OvCa9_classI_Rep3	3	472.2821044921875	3	472.286974	1413.83909	-6.0447	-0.0028549	-0.76222	-0.00035999	-6.807	-0.0032148	472.28675973301637	159.08	3.3809	157.81	156.71	160.09	-1.267					177	72	4	0	0	0	0.72507	1	13813	13813		14.694	0.60766	1	110830			51994	1724	43041	43073	56373	56373					0.1487274666135363
RVMLYPSRI	9	Unmodified	_RVMLYPSRI_					0	0	0		ENSG00000182899|ENST00000647248|RPL35A	ENSG00000182899|ENST00000647248|RPL35A	ENSG00000182899|ENST00000647248|RPL35A	MULTI-MSMS	OvCa99_classI_Rep5	1	567.827880859375	2	567.826243	1133.63793	1.0876	0.00061755	-0.29377	-0.00016681	0.79379	0.00045074	567.8259505149963	74.493	1.1197	74.493	74.249	75.369	0					59	27	4	0	0	0	0.2077	1	7374	7374		75.043	0.78827	1	3427400			51995	8035	43042	43074	56374	56374					0.07646057624833702
RVMLYPSRI	9	Unmodified	_RVMLYPSRI_					0	0	0		ENSG00000182899|ENST00000647248|RPL35A	ENSG00000182899|ENST00000647248|RPL35A	ENSG00000182899|ENST00000647248|RPL35A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	567.826243	1133.63793	-0.86343	-0.00049028	6.8824	0.003908	6.019	0.0034177	567.8297553352658	76.607	1.6701	74.753	74.255	75.925	-1.854	0.045498	0.0029584	NaN	75.043	48	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184850			51996	8035	43042	43074							0.07646057624833702
RVMLYPSRI	9	Unmodified	_RVMLYPSRI_					0	0	0		ENSG00000182899|ENST00000647248|RPL35A	ENSG00000182899|ENST00000647248|RPL35A	ENSG00000182899|ENST00000647248|RPL35A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	567.826243	1133.63793	-1.0235	-0.00058118	6.7677	0.0038429	5.7442	0.0032617	567.8298707021075	77.043	1.5332	74.671	74.348	75.881	-2.3715	-0.03685	0.0028281	NaN	75.043	42	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193900			51997	8035	43042	43074							0.07646057624833702
RVMLYPSRI	9	Unmodified	_RVMLYPSRI_					0	0	0		ENSG00000182899|ENST00000647248|RPL35A	ENSG00000182899|ENST00000647248|RPL35A	ENSG00000182899|ENST00000647248|RPL35A	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	567.826243	1133.63793	0.45064	0.00025589	5.2319	0.0029708	5.6825	0.0032267	567.8290359678601	77.731	1.3859	74.914	74.681	76.067	-2.8165	0.20641	0.001084	NaN	75.043	39	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236350			51998	8035	43042	43074							0.07646057624833702
RVMPAQLKVLT	11	Unmodified	_RVMPAQLKVLT_					0	0	0		nc|ENSG00000173692|Q99460-2|PSMD1;ENSG00000173692|ENST00000308696|PSMD1;ARMC9-PSMD1|2|fusion;ARMC9-PSMD1|1|fusion	nc|ENSG00000173692|Q99460-2|PSMD1	nc|ENSG00000173692|Q99460-2|PSMD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	628.38134765625	2	628.381383	1254.74821	-1.7019	-0.0010694	3.3176	0.0020847	1.6158	0.0010153	628.3832559511075	147.74	1.901	146.3	145.18	147.08	-1.435					72	37	2	0	0	0	0.67529	1	14536	14536		37.812	2.6595	1	277210			51999	7405	43043	43075	56375	56375					0.131028578932046
RVMQLLAKVH	10	Unmodified	_RVMQLLAKVH_					0	0	0			REV__PCNT|p.A2734Qfs*36|1|0.3|ENSG00000160299|chr21:46431663-46431664|-/CAGAA|frameshift_variant	REV__PCNT|p.A2734Qfs*36|1|0.3|ENSG00000160299|chr21:46431663-46431664|-/CAGAA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8555908203125	2	597.860618	1193.70668	-2.7036	-0.0016164	-4.475	-0.0026754	-7.1786	-0.0042918	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.66721	1	12408	12408		34.173	2.6427	1	591030	+		52000	20654	43044	43076	56376	56376					0.11757721924527686
RVMQLPLPGVY	11	Unmodified	_RVMQLPLPGVY_					0	0	0		ENST00000300278.8_1_21:34918541-34918625:+|nuORF	ENST00000300278.8_1_21:34918541-34918625:+|nuORF	ENST00000300278.8_1_21:34918541-34918625:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	424.9105529785156	3	424.909281	1271.70601	1.7676	0.00075109	1.0755	0.00045701	2.8432	0.0012081	424.90976624626023	65.471	1.3717	62.526	62.148	63.519	-2.9459					98	26	5	0	0	0	0.66495	1	2600	2600		38.754	3.5754	1	905110			52001	10172	43045	43077	56377	56377					0.0810288248485449
RVMSSRVPF	9	Unmodified	_RVMSSRVPF_					0	0	0			REV__ENSG00000162391|ENST00000302250|FAM151A	REV__ENSG00000162391|ENST00000302250|FAM151A	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.30322265625	2	539.794943	1077.57533	2.1239	0.0011464	1.4691	0.00079301	3.593	0.0019395	539.7955796199672	92.762	0.29111	92.762	92.594	92.885	0					8	6	2	0	0	0	0.027462	1	10046	10046		29.15	0	1	234980	+		52002	20729	43046	43078	56378	56378					0.039649115566362525
RVNAIYGLI	9	Unmodified	_RVNAIYGLI_					0	0	0		ENSG00000181001|ENST00000641645|OR52N1	ENSG00000181001|ENST00000641645|OR52N1	ENSG00000181001|ENST00000641645|OR52N1	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8032531738281	2	509.805834	1017.59712	-0.41042	-0.00020923	-3.6368	-0.0018541	-4.0473	-0.0020633	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.50066	1	13537	13537		42.474	0.078325	1	150140			52003	7909	43047	43079	56379	56379					0.08902039576844345
RVNKASAHNKN	11	Unmodified	_RVNKASAHNKN_					0	0	0		ENSG00000143368|ENST00000271628|SF3B4;ENST00000553618.1_1_14:67665960-67666731:+|nuORF	ENSG00000143368|ENST00000271628|SF3B4	ENSG00000143368|ENST00000271628|SF3B4	MULTI-MSMS	OvCa99_classI_Rep5	1	619.8427124023438	2	619.839259	1237.66397	0.55425	0.00034355	2.3234	0.0014402	2.8777	0.0017837	619.8406269100077	152.43	1.9041	152.43	151.97	153.88	0					79	42	2	0	0	0	0.69099	1	17932	17932		32.751	0	1	1109600			52004	5042	43048	43080	56380	56380					0.054640431206507856
RVNLNVLREAV	11	Unmodified	_RVNLNVLREAV_					0	0	0		ENST00000544349.5_1_12:122735394-122750988:-|nuORF;ENSG00000139719|ENST00000267199|VPS33A	ENST00000544349.5_1_12:122735394-122750988:-|nuORF	ENST00000544349.5_1_12:122735394-122750988:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	641.881591796875	2	641.883136	1281.75172	-4.6434	-0.0029805	3.7859	0.0024301	-0.85746	-0.00055039	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.71191	1	15600	15600		25.574	5.5773	1	543390			52005	4798	43049	43081	56381	56381					0.12211243991418996
RVNLNVLREAV	11	Unmodified	_RVNLNVLREAV_					0	0	0		ENST00000544349.5_1_12:122735394-122750988:-|nuORF;ENSG00000139719|ENST00000267199|VPS33A	ENST00000544349.5_1_12:122735394-122750988:-|nuORF	ENST00000544349.5_1_12:122735394-122750988:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8826293945312	2	641.883136	1281.75172	-2.5182	-0.0016164	1.1749	0.00075413	-1.3433	-0.00086223	641.8839546837315	150.47	2.9704	149.03	147.78	150.75	-1.4344					235	64	4	0	0	0	0.7046	1	15001	15001		28.081	3.5623	1	344900			52006	4798	43049	43081	56382	56382					0.12211243991418996
RVNNGPKI	8	Unmodified	_RVNNGPKI_					0	0	0			REV__nc|ENSG00000095627|Q9BXT4-2|TDRD1	REV__nc|ENSG00000095627|Q9BXT4-2|TDRD1	MULTI-MSMS	OvCa9_classI_Rep2	2	449.2681884765625	2	449.266876	896.519199	3.2258	0.0014492	1.1164	0.00050155	4.3422	0.0019508	449.26732371902864	112.43	2.5171	112.3	111.93	114.45	-0.12174					121	50	4	0	0	0	0.71369	1	10711	10711		40.573	1.5511	1	1472600	+		52007	17294	43050	43082	56383	56383					0.06680026711467235
RVNNNRGNSL	10	Unmodified	_RVNNNRGNSL_					0	0	0		ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	ENSG00000144867|ENST00000678299|SRPRB	MULTI-MSMS	OvCa9_classI_Rep2	2	572.304443359375	2	572.30251	1142.59047	-0.9687	-0.00055439	0.58816	0.00033661	-0.38054	-0.00021778	572.3028113355458	31.857	0.74275	29.147	28.986	29.729	-2.7097					23	14	3	0	0	0	0.69073	1	1001	1001		31.53	2.3598	1	62935			52008	5190	43051	43083	56384	56384					0.024874946781892504
RVNPKTIGK	9	Unmodified	_RVNPKTIGK_					0	0	0		ENSG00000124875|ENST00000226317|CXCL6	ENSG00000124875|ENST00000226317|CXCL6	ENSG00000124875|ENST00000226317|CXCL6	MULTI-MSMS	OvCa9_classI_Rep2	2	506.8166198730469	2	506.816733	1011.61891	-0.93251	-0.00047261	0.35454	0.00017969	-0.57797	-0.00029292	506.81667627584164	32.71	0.94407	30.001	29.778	30.722	-2.7097					25	18	2	0	0	0	0.46356	1	1109	1109		45.972	1.8554	1	45472			52009	3685	43052	43084	56385	56385					0.11356844325428028
RVNRDGRLLL	10	Unmodified	_RVNRDGRLLL_					0	0	0			REV__ENSG00000105278|ENST00000262961|ZFR2	REV__ENSG00000105278|ENST00000262961|ZFR2	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3690795898438	2	606.370195	1210.72584	-3.14	-0.001904	2.1543	0.0013063	-0.98567	-0.00059768	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.78463	2	15009	14987;15009		20.947	4.355	1	257720	+		52010	17708	43053	43085	56386;56387	56387					0.12890394539795125
RVNRDGRLLL	10	Unmodified	_RVNRDGRLLL_					0	0	0			REV__ENSG00000105278|ENST00000262961|ZFR2	REV__ENSG00000105278|ENST00000262961|ZFR2	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3687744140625	2	606.370195	1210.72584	-1.3399	-0.00081245	0.36309	0.00022017	-0.97677	-0.00059228	606.3703052098949	148.27	2.4393	146.84	145.43	147.87	-1.4351					149	49	5	0	0	0	0.74374	1	14637	14637		25.574	2.0514	1	591330	+		52011	17708	43053	43085	56388	56388					0.12890394539795125
RVNSKGYKV	9	Unmodified	_RVNSKGYKV_					0	0	0		ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	ENSG00000155827|ENST00000389120|RNF20	MULTI-MSMS	OvCa99_classI_Rep5	1	525.8064575195312	2	525.806365	1049.59818	-0.85653	-0.00045037	0.64919	0.00034135	-0.20735	-0.00010902	525.80665942907	28.962	0.74739	28.962	28.739	29.486	0					36	14	4	0	0	0	0.33652	1	989	989		58.782	3.2778	1	492970			52012	5803	43054	43086	56389	56389					0.07536253945750104
RVNSKRPHL	9	Unmodified	_RVNSKRPHL_					0	0	0			REV__ENST00000495373.5_1_3:56787557-56789160:-|nuORF	REV__ENST00000495373.5_1_3:56787557-56789160:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8299560546875	2	553.830706	1105.64686	0.13278	7.3535E-05	-1.033	-0.00057208	-0.90018	-0.00049855	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.62352	1	14050	14050		29.15	1.0681	1	400120	+		52013	26746	43055	43087	56390	56390					0.09826167305527633
RVNTPVNKNLK	11	Unmodified	_RVNTPVNKNLK_					0	0	0			REV__ENSG00000131503|ENST00000360839|ANKHD1	REV__ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8812866210938	2	641.883136	1281.75172	-2.5182	-0.0016164	1.1749	0.00075413	-1.3433	-0.00086223	641.8839546837315	150.47	2.9704	149.03	147.78	150.75	-1.4344					235	64	4	0	0	0	0.72491	1	15038	15038		16.717	1.0756	1	344900	+		52014	19019	43056	43088	56391	56391					0.12211243991396259
RVPAFTELF	9	Unmodified	_RVPAFTELF_					0	0	0		ENST00000494484.1_1_7:44839011-44839095:+|nuORF;ENST00000435399.1_1_1:45880815-45881013:+|nuORF	ENST00000494484.1_1_7:44839011-44839095:+|nuORF	ENST00000494484.1_1_7:44839011-44839095:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	540.2979736328125	2	540.297842	1078.58113	-1.8908	-0.0010216	2.144	0.0011584	0.25319	0.0001368	540.2989536670705	38.535	2.9688	35.825	35.469	38.438	-2.7097					158	59	5	0	0	0	0.5811	1	1914	1914		34.173	2.6427	1	1380400			52015	11858	43057	43089	56392	56392					0.04498333339938654
RVPCFLKVVG	10	Carbamidomethyl (C)	_RVPC(Carbamidomethyl (C))FLKVVG_	RVPC(1)FLKVVG		RVPC(63)FLKVVG		0	1	0			REV__nc|ENSG00000164808|Q14159-3|SPIDR	REV__nc|ENSG00000164808|Q14159-3|SPIDR	MULTI-MSMS	OvCa99_classI_Rep5	1	587.8453979492188	2	587.841894	1173.66923	-0.26315	-0.00015469	2.8433	0.0016714	2.5802	0.0015167	587.8432470297334	43.036	0.85448	43.036	42.624	43.478	0					46	19	4	0	0	0	0.43592	1	2821	2821		63.306	8.53	1	1170200	+		52016	28973	43058	43090	56393	56393	356				0.0893463065888227
RVPCFLKVVG	10	Carbamidomethyl (C)	_RVPC(Carbamidomethyl (C))FLKVVG_					0	1	0			REV__nc|ENSG00000164808|Q14159-3|SPIDR	REV__nc|ENSG00000164808|Q14159-3|SPIDR	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	587.841894	1173.66923	-0.26315	-0.00015469	2.8433	0.0016714	2.5802	0.0015167	587.8432470297334	43.036	0.85448	43.036	42.624	43.478	0	0	0	NaN	63.306	46	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1170200	+		52017	28973	43058	43090			356				0.0893463065888227
RVPDQKLVGAR	11	Unmodified	_RVPDQKLVGAR_					0	0	0			REV__ENSG00000130751|ENST00000602212|NPAS1	REV__ENSG00000130751|ENST00000602212|NPAS1	MULTI-MSMS	OvCa9_classI_Rep3	3	619.869140625	2	619.870028	1237.7255	-2.7857	-0.0017268	1.79	0.0011095	-0.99576	-0.00061724	619.8709153162803	147.4	3.9416	146.45	144.36	148.3	-0.9512					241	78	4	0	0	0	0.71789	1	12440	12440		23.523	0.94304	1	225770	+		52018	18967	43059	43091	56394	56394					0.11614974819940471
RVPEQLLLVP	10	Unmodified	_RVPEQLLLVP_					0	0	0			REV__ENST00000443185.6_1_18:74154456-74154642:-|nuORF	REV__ENST00000443185.6_1_18:74154456-74154642:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	582.3541870117188	2	582.360973	1162.70739	-7.1979	-0.0041918	-3.9054	-0.0022744	-11.103	-0.0064661	582.3585428029057	164.17	0.27028	162.53	162.35	162.62	-1.6383					17	6	3	0	0	0	0.71173	1	16224	16224		29.17	1.0886	1	502740	+		52019	25863	43060	43092	56395	56395					0.13254839845239985
RVPGARVKWV	10	Unmodified	_RVPGARVKWV_					0	0	0			REV__ENST00000307741.10_1_19:2813607-2814732:+|nuORF	REV__ENST00000307741.10_1_19:2813607-2814732:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3565063476562	2	584.359099	1166.70365	-2.312	-0.0013511	-2.2933	-0.0013401	-4.6053	-0.0026912	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.7759	1	14627	14627		21.96	1.9631	1	180810	+		52020	24311	43061	43093	56396	56396					0.1269621486203505
RVPGARVWPL	10	Unmodified	_RVPGARVWPL_					0	0	0			REV__ENST00000360642.7_1_4:170541712-170541889:+|nuORF	REV__ENST00000360642.7_1_4:170541712-170541889:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8433837890625	2	575.845825	1149.6771	-2.8608	-0.0016474	-1.7485	-0.0010069	-4.6093	-0.0026543	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.64063	1	14589	14589		37.159	7.9891	1	356230	+		52021	24836	43062	43094	56397	56397					0.1082452597070187
RVPGARVWPL	10	Unmodified	_RVPGARVWPL_					0	0	0			REV__ENST00000360642.7_1_4:170541712-170541889:+|nuORF	REV__ENST00000360642.7_1_4:170541712-170541889:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8432006835938	2	575.845825	1149.6771	-1.5734	-0.00090602	-2.8677	-0.0016514	-4.4411	-0.0025574	575.8439449675558	145.55	4.7888	144.12	142.78	147.57	-1.4357					360	93	6	0	0	0	0.62668	1	14499	14499		38.806	3.6054	1	565210	+		52022	24836	43062	43094	56398	56398					0.1082452597070187
RVPGKVNRII	10	Unmodified	_RVPGKVNRII_					0	0	0			REV__ENST00000442562.1_1_17:18476116-18476272:+|nuORF	REV__ENST00000442562.1_1_17:18476116-18476272:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	576.3716430664062	2	576.372207	1150.72986	-1.827	-0.001053	1.5956	0.00091967	-0.23133	-0.00013333	576.3730150957791	53.322	1.3909	50.508	50.182	51.573	-2.8139					65	27	4	0	0	0	0.72319	1	3618	3618		27.882	4.8398	1	195240	+		52023	23398	43063	43095	56399	56399					0.16052484033502878
RVPKYDLESA	10	Unmodified	_RVPKYDLESA_					0	0	0			REV__tr|A0A553SSF5|A0A553SSF5_NIACILacIfamilyDNA-bindingtranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03020PE=4SV=1	REV__tr|A0A553SSF5|A0A553SSF5_NIACILacIfamilyDNA-bindingtranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_03020PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	589.3416748046875	2	589.31422	1176.61389	-4.4367	-0.0026146	1.0657	0.00062801	-3.371	-0.0019866	589.3147259938418	145.21	3.4283	144.24	142.85	146.28	-0.97299					124	68	3	0	0	0	0.026891	1	12371	12371		47.657	24.615	1	30077	+		52024	30834	43064	43096	56400	56400					0.032644956721242124
RVPLFLIF	8	Unmodified	_RVPLFLIF_					0	0	0		ENSG00000186513|ENST00000641291|OR9Q2	ENSG00000186513|ENST00000641291|OR9Q2	ENSG00000186513|ENST00000641291|OR9Q2	MULTI-MSMS	OvCa9_classI_Rep3	3	502.81390380859375	2	502.818213	1003.62187	-5.7843	-0.0029085	-2.5946	-0.0013046	-8.3789	-0.0042131	502.8168335130942	153.97	1.772	152.96	152.62	154.39	-1.0076					110	37	4	0	0	0	0.75991	1	13252	13252		21.702	0	1	860080			52025	8342	43065	43097	56401	56401					0.12020719450219985
RVPLLDYGY	9	Unmodified	_RVPLLDYGY_					0	0	0		ENSG00000188909|ENST00000343035|BSX	ENSG00000188909|ENST00000343035|BSX	ENSG00000188909|ENST00000343035|BSX	MULTI-MSMS	OvCa9_classI_Rep2	2	548.2951049804688	2	548.295299	1094.57605	-1.4493	-0.00079464	1.5915	0.0008726	0.14219	7.7962E-05	548.2961982412694	34.285	4.3001	31.575	31.119	35.419	-2.7097					197	86	6	0	0	0	0.59983	2	1353	1353;1402		31.955	6.5047	1	2359300			52026	8516	43066	43098	56402;56403	56402					0.03254029477329823
RVPLPRVRDS	10	Unmodified	_RVPLPRVRDS_					0	0	0		ENST00000564674.5_1_15:66053761-66084536:-|nuORF	ENST00000564674.5_1_15:66053761-66084536:-|nuORF	ENST00000564674.5_1_15:66053761-66084536:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	597.8558349609375	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.4	1	147.97	147.47	148.47	-1.4344								0	0	0	0.1467	1	14737	14737		37.812	11.748	1				52027	13812	43067	43099	56404	56404					0.11018705648461946
RVPLTSLKSHQ	11	Unmodified	_RVPLTSLKSHQ_					0	0	0		WDR37|p.K294Efs*51|1|0.04|ENSG00000047056|chr10:1103748-1103749|-/G|frameshift_variant;ENSG00000047056|ENST00000263150|WDR37;nc|ENSG00000047056|Q9Y2I8-2|WDR37	WDR37|p.K294Efs*51|1|0.04|ENSG00000047056|chr10:1103748-1103749|-/G|frameshift_variant	WDR37|p.K294Efs*51|1|0.04|ENSG00000047056|chr10:1103748-1103749|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3696899414062	2	633.369861	1264.72517	-4.8824	-0.0030923	3.9881	0.002526	-0.89421	-0.00056637	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.69735	1	13111	13111		30.569	6.0497	1	765700			52028	1138	43068	43100	56405	56405					0.10339555100085818
RVPPEFSF	8	Unmodified	_RVPPEFSF_					0	0	0		ENST00000358556.8_1_4:148402081-148402264:+|nuORF	ENST00000358556.8_1_4:148402081-148402264:+|nuORF	ENST00000358556.8_1_4:148402081-148402264:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.75518798828125	2	489.75581	977.497067	0.96491	0.00047257	-0.20521	-0.0001005	0.7597	0.00037207	489.75553304007275	33.559	2.5913	30.771	30.259	32.85	-2.7881					111	51	3	0	0	0	0.73938	1	964	964		31.955	0	1	83915			52029	10737	43069	43101	56406	56406					0.007418022430556448
RVPRAGVGLH	10	Unmodified	_RVPRAGVGLH_					0	0	0			REV__L1PB4_dup1466|chr4:19614553-19617282:+|1.566952962030771|0.0066926762288261|7.87|427.0|167|3|anti-sense	REV__L1PB4_dup1466|chr4:19614553-19617282:+|1.566952962030771|0.0066926762288261|7.87|427.0|167|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	531.3195190429688	2	531.319974	1060.6254	-0.48798	-0.00025927	0.0089773	4.7698E-06	-0.479	-0.0002545	531.3198736184474	33.707	0.48395	33.707	33.533	34.017	0					31	9	4	0	0	0	0.55145	1	1564	1564		47.916	9.1095	1	947660	+		52030	28604	43070	43102	56407	56407					0.09750782276819336
RVPRAHSPGI	10	Unmodified	_RVPRAHSPGI_					0	0	0		ENST00000265634.3_1_7:98257984-98258137:+|nuORF	ENST00000265634.3_1_7:98257984-98258137:+|nuORF	ENST00000265634.3_1_7:98257984-98258137:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.3176879882812	2	545.317432	1088.62031	-0.51373	-0.00028014	-0.77412	-0.00042214	-1.2878	-0.00070228	545.3169196404446	142.63	4.7541	141.19	139.73	144.49	-1.4427					172	91	2	0	0	0	0.73378	1	13985	13985		26.693	3.1702	1	155190			52031	9954	43071	43103	56408	56408					0.07954478414194455
RVPRAVRV	8	Unmodified	_RVPRAVRV_					0	0	0		nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;ENST00000465814.5_1_11:72407932-72423670:-|nuORF;nc|ENSG00000186635|Q96P48-7|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	476.81182861328125	2	476.811785	951.609017	-0.14644	-6.9823E-05	-0.039722	-1.894E-05	-0.18616	-8.8763E-05	476.8115936800583	35.73	0.83094	35.73	35.52	36.351	0					35	17	3	0	0	0	0.44269	1	1829	1829		83.287	30.988	1	968020			52032	8350	43072	43104	56409	56409					0.13127701110704493
RVPRGLGT	8	Unmodified	_RVPRGLGT_					0	0	0		ENST00000542466.2_1_12:58120838-58121579:+|nuORF	ENST00000542466.2_1_12:58120838-58121579:+|nuORF	ENST00000542466.2_1_12:58120838-58121579:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	428.2611083984375	2	428.261594	854.508634	-2.1797	-0.00093349	2.171	0.00092976	-0.0087153	-3.7324E-06	428.2624599299376	144.02	1.6837	143.79	143.2	144.88	-0.22697					114	33	5	0	0	0	0.75426	1	14511	14511		18.324	0	1	330270			52033	13479	43073	43105	56410	56410					0.07556044057048439
RVPRGLGT	8	Unmodified	_RVPRGLGT_					0	0	0		ENST00000542466.2_1_12:58120838-58121579:+|nuORF	ENST00000542466.2_1_12:58120838-58121579:+|nuORF	ENST00000542466.2_1_12:58120838-58121579:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	428.2611389160156	2	428.261594	854.508634	-2.5112	-0.0010754	2.6852	0.00115	0.17402	7.4528E-05	428.26264584865925	144.43	1.5889	143.46	143.1	144.69	-0.97301					79	31	4	0	0	0	0.75241	2	12060	12060;12084		25.45	0	1	839380			52034	13479	43073	43105	56411;56412	56411					0.07556044057048439
RVPRLNKNSK	10	Unmodified	_RVPRLNKNSK_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3702392578125	2	606.370195	1210.72584	-2.264	-0.0013728	1.1871	0.00071982	-1.0769	-0.00065302	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.77039	1	12506	12506		22.58	2.5829	1	205770			52035	1754	43074	43106	56413	56413					0.12890394539772387
RVPRQQPL	8	Unmodified	_RVPRQQPL_					0	0	0		ENST00000497847.1_1_1:249152205-249152451:-|nuORF	ENST00000497847.1_1_1:249152205-249152451:-|nuORF	ENST00000497847.1_1_1:249152205-249152451:-|nuORF	MSMS	OvCa9_classI_Rep2	2	497.30230712890625	2	497.30125	992.587947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.7	1	129.48	128.98	129.98	-0.22696								0	0	0	0.30129	1	12738	12738		24.203	1.1603	1				52036	12817	43075	43107	56414	56414					0.09135691011192648
RVPRRFTSA	9	Unmodified	_RVPRRFTSA_					0	0	0			REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF	REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	545.31640625	2	545.317432	1088.62031	-1.7047	-0.0009296	0.076343	4.1631E-05	-1.6283	-0.00088797	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.62352	2	14242	14242;14331		29.15	4.9906	1	202430	+		52037	25108	43076	43108	56415;56416	56415					0.07954478414194455
RVPRRFTSA	9	Unmodified	_RVPRRFTSA_					0	0	0			REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF	REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	545.316162109375	2	545.317432	1088.62031	-2.8527	-0.0015556	1.4949	0.0008152	-1.3578	-0.00074042	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.50149	3	11903	11681;11903;11976		42.396	13.226	1	337600	+		52038	25108	43076	43108	56417;56418;56419	56418					0.07954478414194455
RVPRRFTSA	9	Unmodified	_RVPRRFTSA_					0	0	0			REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF	REV__ENST00000376983.7_1_X:47509324-47509894:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.3169555664062	2	545.317432	1088.62031	-0.51373	-0.00028014	-0.77412	-0.00042214	-1.2878	-0.00070228	545.3169196404446	142.63	4.7541	141.19	139.73	144.49	-1.4427					172	91	2	0	0	0	0.56889	1	14076	14076		35.618	10.044	1	155190	+		52039	25108	43076	43108	56420	56420					0.07954478414194455
RVPSLQSREQ	10	Unmodified	_RVPSLQSREQ_					0	0	0		ENST00000324856.11_1_1:27022599-27022719:+|nuORF	ENST00000324856.11_1_1:27022599-27022719:+|nuORF	ENST00000324856.11_1_1:27022599-27022719:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	600.3230590820312	2	600.328193	1198.64183	-3.9024	-0.0023427	-3.7192	-0.0022328	-7.6217	-0.0045755	600.3257925158986	151.56	1.1868	151.34	150.94	152.13	-0.22696					55	23	3	0	0	0	0.74374	1	15412	15412		25.574	2.0514	1	109540			52040	10398	43077	43109	56421	56421					0.050458186522291726
RVPVARGG	8	Unmodified	_RVPVARGG_					0	0	0		ENST00000370733.4_1_6:56911423-56911510:+|nuORF	ENST00000370733.4_1_6:56911423-56911510:+|nuORF	ENST00000370733.4_1_6:56911423-56911510:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	406.2481384277344	2	406.248486	810.48242	0.12737	5.1745E-05	0.179	7.2718E-05	0.30637	0.00012446	406.2484453732125	140.19	2.0181	139.96	139.4	141.42	-0.22697					109	40	4	0	0	0	0.74971	2	14067	14067;14105		26.796	2.655	1	304300			52041	10937	43078	43110	56422;56423	56422					0.06959774885569914
RVPVARGG	8	Unmodified	_RVPVARGG_					0	0	0		ENST00000370733.4_1_6:56911423-56911510:+|nuORF	ENST00000370733.4_1_6:56911423-56911510:+|nuORF	ENST00000370733.4_1_6:56911423-56911510:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	406.24859619140625	2	406.248486	810.48242	-1.2292	-0.00049936	1.4085	0.00057221	0.17932	7.285E-05	406.24894809520566	140.8	1.576	139.77	139.38	140.96	-1.0339					88	31	4	0	0	0	0.75661	1	11592	11592		19.36	0	1	902300			52042	10937	43078	43110	56424	56424					0.06959774885569914
RVPVARGG	8	Unmodified	_RVPVARGG_					0	0	0		ENST00000370733.4_1_6:56911423-56911510:+|nuORF	ENST00000370733.4_1_6:56911423-56911510:+|nuORF	ENST00000370733.4_1_6:56911423-56911510:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	406.24920654296875	2	406.248486	810.48242	1.9995	0.00081228	-1.9505	-0.00079239	0.048949	1.9885E-05	406.2475600842221	141.22	1.3094	139.76	139.45	140.76	-1.4627					69	24	4	0	0	0	0.75661	2	13811	13811;13835		19.36	0	1	437180			52043	10937	43078	43110	56425;56426	56425					0.06959774885569914
RVPVIKMGT	9	Unmodified	_RVPVIKMGT_					0	0	0		ENSG00000163352|ENST00000392487|LENEP	ENSG00000163352|ENST00000392487|LENEP	ENSG00000163352|ENST00000392487|LENEP	MULTI-MSMS	OvCa9_classI_Rep3	3	500.7985534667969	2	500.802237	999.589921	-4.5773	-0.0022923	-3.1922	-0.0015987	-7.7695	-0.003891	500.8005489314557	149.34	2.1117	148.39	147.7	149.81	-0.9512					96	41	4	0	0	0	0.5811	2	12660	12633;12660		34.173	2.2177	1	278740			52044	6291	43079	43111	56427;56428	56428					0.09010983704797582
RVPVLQSRL	9	Unmodified	_RVPVLQSRL_					0	0	0			REV__ENSG00000117407|ENST00000372359|ARTN	REV__ENSG00000117407|ENST00000372359|ARTN	MULTI-MSMS	OvCa9_classI_Rep2	2	534.3379516601562	2	534.337833	1066.66111	-1.8836	-0.0010065	1.4667	0.00078373	-0.4169	-0.00022277	534.3385363027232	49.37	2.527	46.609	45.829	48.356	-2.7603					129	50	4	0	0	0	0.53483	1	3102	3102		39.253	2.0937	1	911830	+		52045	18349	43080	43112	56429	56429					0.1304481973379552
RVPVLQSRL	9	Unmodified	_RVPVLQSRL_					0	0	0			REV__ENSG00000117407|ENST00000372359|ARTN	REV__ENSG00000117407|ENST00000372359|ARTN	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.3389892578125	2	534.337833	1066.66111	-2.8968	-0.0015479	2.273	0.0012145	-0.62378	-0.00033331	534.3389697758937	49.731	2.2182	46.589	45.937	48.155	-3.1416					92	42	3	0	0	0	0.55011	1	2846	2846		37.812	3.8899	1	787730	+		52046	18349	43080	43112	56430	56430					0.1304481973379552
RVPWSHIKK	9	Unmodified	_RVPWSHIKK_					0	0	0		tr|A0A553SNU6|A0A553SNU6_NIACIYlmC/YmxHfamilysporulationproteinOS=NialliacirculansOX=1397GN=CEQ21_25240PE=4SV=1	tr|A0A553SNU6|A0A553SNU6_NIACIYlmC/YmxHfamilysporulationproteinOS=NialliacirculansOX=1397GN=CEQ21_25240PE=4SV=1	tr|A0A553SNU6|A0A553SNU6_NIACIYlmC/YmxHfamilysporulationproteinOS=NialliacirculansOX=1397GN=CEQ21_25240PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8424072265625	2	575.845825	1149.6771	-0.33973	-0.00019563	-3.7469	-0.0021576	-4.0866	-0.0023533	575.8433458482052	142.38	3.7668	140.93	139.05	142.82	-1.4532					179	72	3	0	0	0	0.56889	1	14130	14130		35.618	1.4457	1	165140			52047	33963	43081	43113	56431	56431					0.1082452597070187
RVQAQLKAL	9	Unmodified	_RVQAQLKAL_					0	0	0			REV__nc|ENSG00000134717|Q96K17-3|BTF3L4	REV__nc|ENSG00000134717|Q96K17-3|BTF3L4	MULTI-MSMS	OvCa99_classI_Rep5	1	513.82470703125	2	513.824558	1025.63456	-0.15171	-7.7953E-05	0.24918	0.00012804	0.097468	5.0082E-05	513.824479367129	46.887	0.66018	46.887	46.676	47.336	0					32	14	3	0	0	0	0.29717	1	3344	3344		63.306	0	1	889350	+		52048	19224	43082	43114	56432	56432					0.12277130842471706
RVQEQGGVQ	9	Unmodified	_RVQEQGGVQ_					0	0	0			REV__nc|ENSG00000173482|P28827|PTPRM	REV__nc|ENSG00000173482|P28827|PTPRM	MULTI-MSMS	OvCa99_classI_Rep5	1	500.7649230957031	2	500.762155	999.509757	-0.037378	-1.8717E-05	0.011425	5.7214E-06	-0.025953	-1.2996E-05	500.7620706549025	31.148	0.57904	31.148	30.881	31.46	0					16	11	2	0	0	0	0.44568	1	1254	1254		47.657	5.2612	1	355680	+		52049	21777	43083	43115	56433	56433					0.00998213635295997
RVQGAWPLL	9	Unmodified	_RVQGAWPLL_					0	0	0		ENSG00000168509|ENST00000336751|HJV;HFE2|p.C321Vfs*21|1|0.15|ENSG00000168509|chr1:146018397-146018398|-/C|frameshift_variant;nc|ENSG00000168509|Q6ZVN8-2|HJV	ENSG00000168509|ENST00000336751|HJV	ENSG00000168509|ENST00000336751|HJV	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.3043212890625	2	520.306001	1038.59745	-2.1259	-0.0011061	-1.8853	-0.00098093	-4.0112	-0.0020871	520.3049655422371	49.989	1.4992	46.847	46.455	47.954	-3.1416					67	28	4	0	0	0	0.58665	1	2857	2857		33.516	0.70317	1	772500			52050	6916	43084	43116	56434	56434					0.07969459296691639
RVQGQLVVN	9	Unmodified	_RVQGQLVVN_					0	0	0			REV__ENST00000472789.1_1_7:150936247-150937287:-|nuORF	REV__ENST00000472789.1_1_7:150936247-150937287:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.8210754394531	2	506.79854	1011.58253	-0.20674	-0.00010478	3.3334	0.0016893	3.1266	0.0015846	506.80028063696284	110.08	0.79106	109.9	109.61	110.4	-0.17237					24	15	2	0	0	0	0.027462	1	10381	10381		37.159	4.3467	1	36205	+		52051	26319	43085	43117	56435	56435					0.07719967428704422
RVQGVSITR	9	Unmodified	_RVQGVSITR_					0	0	0		ENSG00000134070|ENST00000256458|IRAK2	ENSG00000134070|ENST00000256458|IRAK2	ENSG00000134070|ENST00000256458|IRAK2	MULTI-MSMS	OvCa99_classI_Rep5	1	508.30352783203125	2	508.30399	1014.59343	-0.5572	-0.00028323	-1.2979	-0.00065975	-1.8551	-0.00094297	508.3034475130011	37.918	1.5288	37.918	37.668	39.196	0					107	33	5	0	0	0	0.21231	1	2171	2171		74.255	4.6274	1	42182000			52052	4257	43086	43118	56436	56436					0.08671369802993922
RVQKRLAD	8	Unmodified	_RVQKRLAD_					0	0	0			REV__ENST00000481053.5_1_9:139259475-139262364:-|nuORF	REV__ENST00000481053.5_1_9:139259475-139262364:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	493.2982177734375	2	493.298707	984.582862	3.1299	0.001544	-3.147	-0.0015524	-0.017108	-8.4391E-06	493.29693905803276	26.988	0.77444	24.278	24.097	24.871	-2.7097					47	21	3	0	0	0	0.75426	1	435	435		18.324	0	1	72756	+		52053	22666	43087	43119	56437	56437					0.08995387148547707
RVQLGPIFRTD	11	Unmodified	_RVQLGPIFRTD_					0	0	0			REV__ENST00000480390.1_1_6:155632297-155635574:-|nuORF	REV__ENST00000480390.1_1_6:155632297-155635574:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	435.26885986328125	3	434.582333	1300.72517	0.39401	0.00017123	4.2931	0.0018657	4.6871	0.0020369	434.5843831824479	39.565	0.64502	36.638	36.346	36.991	-2.9264					19	12	2	0	0	0	0.025772	1	1647	1647		33.039	5.3955	1	17564	+		52054	26460	43088	43120	56438	56438					0.0868355510008314
RVQLGPIFRTD	11	Unmodified	_RVQLGPIFRTD_					0	0	0			REV__ENST00000480390.1_1_6:155632297-155635574:-|nuORF	REV__ENST00000480390.1_1_6:155632297-155635574:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	434.582333	1300.72517	-0.46605	-0.00020254	6.3097	0.0027421	5.8436	0.0025395	434.58494907303617	39.507	0.8434	36.797	36.509	37.352	-2.7097	0.079282	0.0011277	NaN	33.039	29	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34068	+		52055	26460	43088	43120							0.0868355510008314
RVQLHIVSSR	10	Unmodified	_RVQLHIVSSR_					0	0	0			REV__ENSG00000197410|ENST00000357232|DCHS2	REV__ENSG00000197410|ENST00000357232|DCHS2	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8548583984375	2	597.856921	1193.69929	-1.9041	-0.0011384	0.86104	0.00051478	-1.0431	-0.00062361	597.8573316932594	144.83	3.9651	143.86	141.71	145.68	-0.97301					192	79	4	0	0	0	0.70152	1	12110	12110		30.318	1.1477	1	187110	+		52056	22920	43089	43121	56439	56439					0.11018705648439209
RVQLHIVSSR	10	Unmodified	_RVQLHIVSSR_					0	0	0			REV__ENSG00000197410|ENST00000357232|DCHS2	REV__ENSG00000197410|ENST00000357232|DCHS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8552856445312	2	597.856921	1193.69929	-0.38237	-0.0002286	-0.55263	-0.00033039	-0.935	-0.00055899	597.8564103488146	145.14	4.0194	143.71	141.51	145.53	-1.4357					229	77	4	0	0	0	0.72319	1	14381	14381		27.882	3.6795	1	217250	+		52057	22920	43089	43121	56440	56440					0.11018705648439209
RVQLHIVSSR	10	Unmodified	_RVQLHIVSSR_					0	0	0			REV__ENSG00000197410|ENST00000357232|DCHS2	REV__ENSG00000197410|ENST00000357232|DCHS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.85595703125	2	597.856921	1193.69929	-1.5377	-0.00091935	0.67572	0.00040398	-0.86202	-0.00051536	597.8570606153338	148.28	4.8676	146.85	145.38	150.25	-1.435					291	102	5	0	0	0	0.79213	1	14510	14510		19.997	0	1	767860	+		52058	22920	43089	43121	56441	56441					0.11018705648439209
RVQNLAGISR	10	Unmodified	_RVQNLAGISR_					0	0	0			REV__SARNP-KCNN4|1|fusion	REV__SARNP-KCNN4|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	557.3244018554688	2	557.327996	1112.64144	-0.84282	-0.00046973	0.63768	0.0003554	-0.20513	-0.00011433	557.3283286206405	34.655	0.4663	34.655	34.398	34.864	0					21	9	3	0	0	0	0.6104	1	1686	1686		40.778	5.1599	1	659470	+		52059	17681	43090	43122	56442	56442					0.08962443723044089
RVQPTQPRRV	10	Unmodified	_RVQPTQPRRV_					0	0	0			REV__ENST00000406420.7_1_2:24239147-24246476:+|nuORF	REV__ENST00000406420.7_1_2:24239147-24246476:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	412.9159240722656	3	412.914305	1235.72109	0.59113	0.00024409	2.7761	0.0011463	3.3672	0.0013904	412.9153562467149	47.646	1.0356	47.646	47.336	48.372	0					59	23	4	0	0	0	0.62712	1	3433	3433		38.754	2.3069	1	2131900	+		52060	25444	43091	43123	56443	56443					0.1126551039703827
RVQRHLERLE	10	Unmodified	_RVQRHLERLE_					0	0	0			REV__ENSG00000226321|ENST00000690015|CROCC2	REV__ENSG00000226321|ENST00000690015|CROCC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	446.24224853515625	3	445.924982	1334.75312	0.010341	4.6114E-06	2.4068	0.0010732	2.4171	0.0010779	446.26217275583485	58.742	0.50529	55.35	55.2	55.705	-3.392					12	9	2	0	0	0	0.026819	1	3881	3881		50.034	25.802	1	11223	+		52061	23370	43092	43124	56444	56444					0.09912878080194787
RVQRKGAKWH	10	Unmodified	_RVQRKGAKWH_					0	0	0		ENST00000311177.6_1_17:46698590-46699007:-|nuORF	ENST00000311177.6_1_17:46698590-46699007:-|nuORF	ENST00000311177.6_1_17:46698590-46699007:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3697509765625	2	633.37053	1264.72651	-4.5141	-0.0028591	2.383	0.0015093	-2.1311	-0.0013498	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.81289	1	15464	15464		17.365	1.3582	1	369460			52062	10295	43093	43125	56445	56445					0.10473233979519136
RVRDIQKQV	9	Unmodified	_RVRDIQKQV_					0	0	0		ENSG00000116133|ENST00000371269|DHCR24	ENSG00000116133|ENST00000371269|DHCR24	ENSG00000116133|ENST00000371269|DHCR24	MULTI-MSMS	OvCa9_classI_Rep4_	4	571.3431396484375	2	571.343646	1140.67274	-0.83933	-0.00047955	0.36778	0.00021013	-0.47156	-0.00026942	571.3436861071159	40.687	1.5633	37.732	37.474	39.038	-2.9541					80	29	4	0	0	0	0.50149	1	1768	1768		42.396	3.1433	1	394980			52063	3157	43094	43126	56446	56446					0.10803016757108708
RVRDIQKQV	9	Unmodified	_RVRDIQKQV_					0	0	0		ENSG00000116133|ENST00000371269|DHCR24	ENSG00000116133|ENST00000371269|DHCR24	ENSG00000116133|ENST00000371269|DHCR24	MULTI-MATCH	OvCa9_classI_Rep2	2		2	571.343646	1140.67274	-0.43959	-0.00025116	0.32109	0.00018346	-0.11849	-6.7701E-05	571.3435957350233	40.748	1.2802	38.039	37.7	38.98	-2.7097	0.15307	-2.573E-05	NaN	42.396	54	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121970			52064	3157	43094	43126							0.10803016757108708
RVRDVFEAK	9	Unmodified	_RVRDVFEAK_					0	0	0		ENSG00000178035|ENST00000326739|IMPDH2;ENST00000491610.1_1_3:49064384-49065376:-|nuORF	ENSG00000178035|ENST00000326739|IMPDH2	ENSG00000178035|ENST00000326739|IMPDH2	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.3184814453125	2	560.317097	1118.61964	-1.057	-0.00059223	1.8291	0.0010248	0.77209	0.00043261	560.3174023180866	49.619	1.5597	46.477	45.832	47.392	-3.1416					80	29	4	0	0	0	0.51865	1	2813	2813		40.778	5.1599	1	333530			52065	7730	43095	43127	56447	56447					0.06507638974449037
RVRDVFEAK	9	Unmodified	_RVRDVFEAK_					0	0	0		ENSG00000178035|ENST00000326739|IMPDH2;ENST00000491610.1_1_3:49064384-49065376:-|nuORF	ENSG00000178035|ENST00000326739|IMPDH2	ENSG00000178035|ENST00000326739|IMPDH2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	560.317097	1118.61964	-0.46445	-0.00026024	1.4562	0.00081593	0.99174	0.00055569	560.3175110194168	49.357	1.2873	46.597	45.929	47.216	-2.7603	0.059633	-0.00016152	NaN	40.778	64	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196250			52066	7730	43095	43127							0.06507638974449037
RVRDVINSM	9	Unmodified	_RVRDVINSM_					0	0	0		ENSG00000170426|ENST00000293502|SDR9C7	ENSG00000170426|ENST00000293502|SDR9C7	ENSG00000170426|ENST00000293502|SDR9C7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.8182373046875	2	545.295307	1088.57606	0.40387	0.00022023	-0.96824	-0.00052798	-0.56437	-0.00030775	545.2945666446768	37.472	0.4482	34.58	34.343	34.791	-2.8925					19	8	3	0	0	0	0.027462	1	1371	1371		39.253	7.298	1	84458			52067	7101	43096	43128	56448	56448					0.035317062056719806
RVRDVINSM	9	Unmodified	_RVRDVINSM_					0	0	0		ENSG00000170426|ENST00000293502|SDR9C7	ENSG00000170426|ENST00000293502|SDR9C7	ENSG00000170426|ENST00000293502|SDR9C7	MULTI-MATCH	OvCa9_classI_Rep2	2		2	545.295307	1088.57606	-2.3075	-0.0012583	2.1829	0.0011904	-0.12459	-6.7939E-05	545.296460480016	37.542	0.34389	34.832	34.682	35.026	-2.7097	0.12644	0.0021636	NaN	47.657	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15301			52068	7101	43096	43128							0.035317062056719806
RVRGGQRRRP	10	Unmodified	_RVRGGQRRRP_					0	0	0		ENSG00000241839|ENST00000323544|PLEKHO2;nc|ENSG00000241839|Q8TD55-2|PLEKHO2;ENST00000502574.1_1_15:65134152-65214443:+|nuORF	ENSG00000241839|ENST00000323544|PLEKHO2	ENSG00000241839|ENST00000323544|PLEKHO2	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.3715209960938	2	619.376678	1236.7388	-6.2743	-0.0038862	-1.6741	-0.0010369	-7.9484	-0.0049231	619.3755572557021	159.71	1.0789	158.1	157.75	158.83	-1.6101					53	24	3	0	0	0	0.78463	1	15782	15782		20.947	0	1	88655			52069	9356	43097	43129	56449	56449					0.1299027044256036
RVRGLALKEPL	11	Unmodified	_RVRGLALKEPL_					0	0	0		ENST00000316292.13_1_6:74230456-74230621:-|nuORF	ENST00000316292.13_1_6:74230456-74230621:-|nuORF	ENST00000316292.13_1_6:74230456-74230621:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	626.8945922851562	2	626.398422	1250.78229	-6.1327	-0.0038415	1.6692	0.0010456	-4.4635	-0.0027959	626.3996536873043	164.07	0.15649	162.67	162.59	162.75	-1.4083					7	4	2	0	0	0	0.72511	1	14334	14334		14.137	1.3254	1	120030			52070	10342	43098	43130	56450	56450					0.16693022376466615
RVRITQPC	8	Unmodified	_RVRITQPC_					0	0	0		ENST00000541239.5_1_13:111293886-111295180:-|nuORF	ENST00000541239.5_1_13:111293886-111295180:-|nuORF	ENST00000541239.5_1_13:111293886-111295180:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.7751770019531	2	486.774011	971.533469	-0.56981	-0.00027737	0.62019	0.00030189	0.050382	2.4525E-05	486.7741937609849	46.235	1.0864	43.162	42.979	44.065	-3.0724					31	20	2	0	0	0	0.73205	1	2421	2421		35.618	3.6634	1	505100			52071	13464	43099	43131	56451	56451					0.0465635586811004
RVRKLPSTTL	10	Unmodified	_RVRKLPSTTL_					0	0	0		nc|ENSG00000117676|Q15418-4|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;nc|ENSG00000117676|Q15418-3|RPS6KA1	nc|ENSG00000117676|Q15418-4|RPS6KA1	nc|ENSG00000117676|Q15418-4|RPS6KA1	MULTI-MSMS	OvCa9_classI_Rep2	2	585.8682250976562	2	585.869497	1169.72444	-1.3452	-0.00078811	0.99673	0.00058395	-0.34846	-0.00020415	585.8699753897401	53.661	1.4932	50.847	50.529	52.022	-2.8139					72	29	4	0	0	0	0.762	1	3649	3649		23.523	0.94304	1	190890			52072	3272	43100	43132	56452	56452					0.1463676045102602
RVRKPLPP	8	Unmodified	_RVRKPLPP_					0	0	0			REV__ENSG00000173402|ENST00000308775|DAG1	REV__ENSG00000173402|ENST00000308775|DAG1	MULTI-MSMS	OvCa99_classI_Rep5	1	481.8164367675781	2	481.816536	961.618519	0.63652	0.00030669	-4.3932	-0.0021167	-3.7567	-0.0018101	481.81479588639235	160.92	2.1046	160.92	159.66	161.77	0					71	41	3	0	0	0	0.75915	1	18901	18901		20.482	1.1219	1	146960	+		52073	21769	43101	43133	56453	56453					0.1361746939621753
RVRKQGTE	8	Unmodified	_RVRKQGTE_					0	0	0			REV__ENST00000478275.1_1_1:212860135-212870482:-|nuORF	REV__ENST00000478275.1_1_1:212860135-212870482:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.29437255859375	2	487.280515	972.546476	-0.0086044	-4.1927E-06	-0.70592	-0.00034398	-0.71453	-0.00034817	487.2800881233489	39.247	0.94363	36.321	36.097	37.04	-2.9264					31	18	2	0	0	0	0.028476	1	1623	1623		73.975	2.679	1	145120	+		52074	26412	43102	43134	56454	56454					0.059105102518515196
RVRKRWLPKI	10	Unmodified	_RVRKRWLPKI_					0	0	0		ENSG00000148411|ENST00000277554|NACC2	ENSG00000148411|ENST00000277554|NACC2	ENSG00000148411|ENST00000277554|NACC2	MULTI-SECPEP	OvCa9_classI_Rep2	2	450.76171875	3	451.298091	1350.87244	3.4693	0.0015657	-4.303	-0.0019419	-0.83375	-0.00037627	451.2963176370734	29.535	0.38085	26.825	26.682	27.063	-2.7097					10	7	2	0	0	0	0.027349	1	710	710		20.837	13.818	1	6782.8			52075	5411	43103	43135	56455	56455					0.2110411649555317
RVRLASHLR	9	Unmodified	_RVRLASHLR_					0	0	0		ENSG00000130203|ENST00000252486|APOE	ENSG00000130203|ENST00000252486|APOE	ENSG00000130203|ENST00000252486|APOE	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.829345703125	2	554.346523	1106.67849	-0.2439	-0.00013521	-2.9002	-0.0016077	-3.1441	-0.0017429	554.8450070735937	60.073	0.19837	60.073	59.997	60.195	0					7	4	2	0	0	0	0.027462	1	5225	5225		10.866	0	1	70195			52076	3967	43104	43136	56456	56456					0.12942160059446906
RVRLMLRSPL	10	Unmodified	_RVRLMLRSPL_					0	0	0			REV__ENST00000522456.1_2_7:27153247-27153442:-|nuORF	REV__ENST00000522456.1_2_7:27153247-27153442:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.26202392578125	3	414.260537	1239.75978	0.073708	3.0534E-05	3.2157	0.0013321	3.2894	0.0013627	414.2618187943835	20.482	1.3692	19.143	18.851	20.22	-1.3386					77	27	4	0	0	0	0.818	1	57	57		16.717	0	1	397370	+		52077	27084	43105	43137	56457	56457					0.1494909970720073
RVRPRVGLGTG	11	Unmodified	_RVRPRVGLGTG_					0	0	0		ENST00000492581.5_1_22:21067427-21075805:-|nuORF	ENST00000492581.5_1_22:21067427-21075805:-|nuORF	ENST00000492581.5_1_22:21067427-21075805:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.356689453125	2	584.357088	1166.69962	-1.7162	-0.0010029	0.61767	0.00036094	-1.0985	-0.00064192	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.71498	1	14174	14174		24.519	0	1	833330			52078	12727	43106	43138	56458	56458					0.122941253683166
RVRQLLSRAQ	10	Unmodified	_RVRQLLSRAQ_					0	0	0			REV__ENSG00000180210|ENST00000311907|F2	REV__ENSG00000180210|ENST00000311907|F2	MULTI-SECPEP	OvCa99_classI_Rep5	1	410.19580078125	3	409.586189	1225.73674	0.68311	0.00027979	-0.69526	-0.00028477	-0.01215	-4.9764E-06	409.58583111759486	35.291	0.65636	35.291	35.004	35.661	0					35	13	4	0	0	0	0.026942	1	1787	1787		26.063	0	1	485200	+		52079	22164	43107	43139	56459	56459					0.13289796914091312
RVRQQLTLH	9	Unmodified	_RVRQQLTLH_					0	0	0		ENST00000590993.1_1_19:36883645-36885097:-|nuORF;ENSG00000120784|ENST00000684514|ZFP30;ENSG00000181007|ENST00000392161|ZFP82	ENST00000590993.1_1_19:36883645-36885097:-|nuORF	ENST00000590993.1_1_19:36883645-36885097:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.84423828125	2	575.843813	1149.67307	-0.33973	-0.00019563	-0.25402	-0.00014628	-0.59375	-0.00034191	575.8433458482052	142.38	3.7668	140.93	139.05	142.82	-1.4532					179	72	3	0	0	0	0.65476	1	13986	13986		25.45	4.5032	1	165140			52080	3452	43108	43140	56460	56460					0.10422436476983421
RVRREREAKNK	11	Unmodified	_RVRREREAKNK_					0	0	0			REV__nc|ENSG00000101333|Q15147-2|PLCB4	REV__nc|ENSG00000101333|Q15147-2|PLCB4	MULTI-MSMS	OvCa9_classI_Rep3	3	481.2828063964844	3	481.286802	1440.83858	-6.6786	-0.0032143	-0.11204	-5.3925E-05	-6.7906	-0.0032682	481.2868612614486	161.01	3.7232	159.65	158.49	162.21	-1.3523					206	77	3	0	0	0	0.72516	1	13972	13972		13.508	1.0751	1	127690	+		52081	17490	43109	43141	56461	56461					0.13579043265849577
RVRRHTKA	8	Unmodified	_RVRRHTKA_					0	0	0		ENST00000505658.5_1_17:48828064-48828295:+|nuORF	ENST00000505658.5_1_17:48828064-48828295:+|nuORF	ENST00000505658.5_1_17:48828064-48828295:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	512.318359375	2	512.317766	1022.62098	-1.0601	-0.00054311	3.2825	0.0016817	2.2224	0.0011386	512.3193628969464	54.362	1.9918	51.548	51.075	53.067	-2.8139					110	39	4	0	0	0	0.70469	1	3763	3763		42.396	7.1954	1	832500			52082	12898	43110	43142	56462	56462					0.11057317853897075
RVRRKRVG	8	Unmodified	_RVRRKRVG_					0	0	0			REV__ENST00000416255.5_1_2:101179854-101179926:+|nuORF	REV__ENST00000416255.5_1_2:101179854-101179926:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.2813110351562	2	513.841408	1025.66826	-1.0711	-0.00055036	2.3036	0.0011837	1.2325	0.0006333	513.842506365183	41.497	0.88485	38.516	38.179	39.064	-2.9804					24	16	2	0	0	0	0.028476	1	1847	1847		24.203	1.1603	1	22488	+		52083	25544	43111	43143	56463	56463					0.15645597124876076
RVRRKRVG	8	Unmodified	_RVRRKRVG_					0	0	0			REV__ENST00000416255.5_1_2:101179854-101179926:+|nuORF	REV__ENST00000416255.5_1_2:101179854-101179926:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	513.841408	1025.66826	0.60645	0.00031162	1.2459	0.00064018	1.8523	0.0009518	513.8420057910249	41.141	0.44317	38.432	38.241	38.684	-2.7097	-0.042218	-0.00070124	NaN	24.203	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12469	+		52084	25544	43111	43143							0.15645597124876076
RVRRNSLQHHQ	11	Unmodified	_RVRRNSLQHHQ_					0	0	0		ENSG00000100629|ENST00000555265|CEP128;ENST00000557377.1_1_14:80993182-80997257:-|nuORF	ENSG00000100629|ENST00000555265|CEP128	ENSG00000100629|ENST00000555265|CEP128	MULTI-MSMS	OvCa9_classI_Rep3	3	477.600341796875	3	477.59938	1429.77631	1.6723	0.00079867	-0.10115	-4.8308E-05	1.5711	0.00075036	477.5992387084214	66.338	0.91516	63.392	63.112	64.027	-2.9459					48	17	4	0	0	0	0.72507	1	2727	2727		14.694	0	1	91492			52085	2093	43112	43144	56464	56464					0.07861316917524164
RVRRSYNN	8	Unmodified	_RVRRSYNN_					0	0	0		WDR11|p.T355Nfs*14|1|0.32|ENSG00000120008|chr10:120866632-120866633|-/A|frameshift_variant;ENSG00000120008|ENST00000263461|WDR11	WDR11|p.T355Nfs*14|1|0.32|ENSG00000120008|chr10:120866632-120866633|-/A|frameshift_variant	WDR11|p.T355Nfs*14|1|0.32|ENSG00000120008|chr10:120866632-120866633|-/A|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	531.8433227539062	2	532.789038	1063.56352	-0.38837	-0.00020692	-4.3698	-0.0023282	-4.7581	-0.0025351	532.786458866907	87.393	0.46266	85.216	84.985	85.447	-2.1768					26	8	4	0	0	0	0.028476	1	5243	5243		49.442	10.635	1	463300			52086	3411	43113	43145	56465	56465					0.03428430857661624
RVRSQDGRH	9	Unmodified	_RVRSQDGRH_					0	0	0			REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	OvCa9_classI_Rep2	2	555.7979125976562	2	555.797395	1109.58024	0.67356	0.00037436	1.1974	0.00066549	1.8709	0.0010399	555.7980692819577	66.887	2.2263	64.226	63.651	65.878	-2.661					106	44	4	0	0	0	0.53483	1	5205	5205		39.253	3.6345	1	1196600	+		52087	20958	43114	43146	56466	56466					0.0298293174362243
RVRSVNAALF	10	Unmodified	_RVRSVNAALF_					0	0	0			REV__LEMD3|p.E727V|1|0.03|ENSG00000174106|chr12:65240962-65240962|A/T|missense_variant	REV__LEMD3|p.E727V|1|0.03|ENSG00000174106|chr12:65240962-65240962|A/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	567.8062133789062	2	566.832914	1131.65128	-0.66015	-0.00037419	3.1695	0.0017966	2.5093	0.0014224	566.8322554463264	69.394	0.40001	66.774	66.515	66.915	-2.6203					11	7	2	0	0	0	0.027117	1	5506	5506		23.042	5.5745	1	20608	+		52088	28617	43115	43147	56467	56467					0.0907163172842047
RVRTGESSV	9	Unmodified	_RVRTGESSV_					0	0	0		ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	ENSG00000156273|ENST00000286800|BACH1	MULTI-MSMS	OvCa99_classI_Rep5	1	495.7699890136719	2	495.76998	989.525407	-0.99258	-0.00049209	0.29321	0.00014536	-0.69937	-0.00034673	495.77006024621306	28.165	0.89726	28.165	27.841	28.739	0					45	17	4	0	0	0	0.44568	1	893	893		47.657	1.6851	1	1543600			52089	5831	43116	43148	56468	56468					0.030225001523376704
RVRTRRGWPV	10	Unmodified	_RVRTRRGWPV_					0	0	0			REV__ENST00000592208.5_1_19:10433104-10439782:-|nuORF	REV__ENST00000592208.5_1_19:10433104-10439782:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8833618164062	2	641.883804	1281.75306	-4.0037	-0.0025699	1.6367	0.0010506	-2.367	-0.0015193	642.3862707583961	149.94	3.9275	149.71	147.52	151.45	-0.22696					225	78	5	0	0	0	0.78463	1	15138	15138		20.947	5.3051	1	222110	+		52090	27947	43117	43149	56469	56469					0.12344922870829578
RVRVSGQGL	9	Unmodified	_RVRVSGQGL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;ENST00000490936.5_1_X:153579531-153588003:-|nuORF;ENST00000466325.1_1_X:153581267-153581814:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.2914733886719	2	486.290882	970.567212	-0.28705	-0.00013959	0.22116	0.00010755	-0.065887	-3.204E-05	486.29057557018166	46.777	2.2575	43.705	42.666	44.923	-3.0724					123	43	5	0	0	0	0.14998	3	2473	2465;2473;2485		84.916	19.112	1	2684900			52091	8659	43118	43150	56470;56471;56472	56471					0.08075100631526766
RVSDINFTL	9	Unmodified	_RVSDINFTL_					0	0	0		nc|ENSG00000110075|Q5H9R7-3|PPP6R3;nc|ENSG00000110075|Q5H9R7-4|PPP6R3;nc|ENSG00000110075|Q5H9R7-6|PPP6R3;nc|ENSG00000110075|Q5H9R7-2|PPP6R3;ENSG00000110075|ENST00000393800|PPP6R3;nc|ENSG00000110075|Q5H9R7-5|PPP6R3	nc|ENSG00000110075|Q5H9R7-3|PPP6R3	nc|ENSG00000110075|Q5H9R7-3|PPP6R3	MULTI-MSMS	OvCa9_classI_Rep3	3	532.7921142578125	2	532.790381	1063.56621	0.87471	0.00046604	-0.7799	-0.00041552	0.094815	5.0517E-05	532.789532964148	105.62	1.4067	104.28	103.94	105.34	-1.3482					56	26	3	0	0	0	0.2077	2	7418	7411;7418		75.043	5.4157	1	324650			52092	2754	43119	43151	56473;56474	56474					0.036968414719467546
RVSFPRAPL	9	Unmodified	_RVSFPRAPL_					0	0	0			REV__ENST00000597836.5_1_19:17337437-17337903:+|nuORF	REV__ENST00000597836.5_1_19:17337437-17337903:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	521.812255859375	2	521.811451	1041.60835	-0.83564	-0.00043605	3.6163	0.001887	2.7806	0.001451	521.8134554363941	67.923	3.082	65.262	64.842	67.924	-2.661					124	61	3	0	0	0	0.59259	1	5355	5355		32.812	6.1195	1	4500900	+		52093	28003	43120	43152	56475	56475					0.08920861671003877
RVSGGGGIPL	10	Unmodified	_RVSGGGGIPL_					0	0	0		ENST00000523045.5_1_22:50946732-50955890:+|nuORF	ENST00000523045.5_1_22:50946732-50955890:+|nuORF	ENST00000523045.5_1_22:50946732-50955890:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	456.76666259765625	2	456.766709	911.518865	-1.0943	-0.00049982	1.1247	0.00051372	0.03042	1.3895E-05	456.76710390256716	37.466	1.7255	34.756	34.386	36.112	-2.7097					82	34	4	0	0	0	0.67931	1	1739	1739		32.812	8.2932	1	799280			52094	13145	43121	43153	56476	56476					0.059566069916286324
RVSGPLQI	8	Unmodified	_RVSGPLQI_					0	0	0		ENST00000608543.1_1_1:155932320-155932747:-|nuORF	ENST00000608543.1_1_1:155932320-155932747:-|nuORF	ENST00000608543.1_1_1:155932320-155932747:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	435.2655029296875	2	435.263802	868.513051	0.43799	0.00019064	0.44959	0.00019569	0.88758	0.00038633	435.2638876947071	71.37	1.0415	71.37	70.915	71.956	0					50	25	3	0	0	0	0.45246	1	6899	6899		82.305	2.3658	1	1746300			52095	14297	43122	43154	56477	56477					0.07353508479968696
RVSGQPQSV	9	Unmodified	_RVSGQPQSV_					0	0	0		ENST00000524192.6_1_20:61904210-61909556:+|nuORF;nc|ENSG00000101199|Q8N6T3-4|ARFGAP1;ENST00000519531.5_1_20:61904210-61914317:+|nuORF;nc|ENSG00000101199|Q8N6T3-5|ARFGAP1;nc|ENSG00000101199|Q8N6T3-3|ARFGAP1;ENSG00000101199|ENST00000370283|ARFGAP1;nc|ENSG00000101199|Q8N6T3-2|ARFGAP1	ENST00000524192.6_1_20:61904210-61909556:+|nuORF	ENST00000524192.6_1_20:61904210-61909556:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	479.2613220214844	2	479.259248	956.503943	-0.40305	-0.00019317	0.42814	0.00020519	0.025086	1.2022E-05	479.2593195047673	36.051	0.64355	36.051	35.799	36.442	0					29	13	3	0	0	0	0.42576	1	1873	1873		49.536	3.5841	1	392810			52096	2149	43123	43155	56478	56478					0.023951151236246915
RVSHKREL	8	Unmodified	_RVSHKREL_					0	0	0			REV__ENST00000605202.5_1_10:122610824-122611019:+|nuORF	REV__ENST00000605202.5_1_10:122610824-122611019:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	512.8057861328125	2	512.804157	1023.59376	0.48569	0.00024906	2.1223	0.0010883	2.608	0.0013374	512.8051194113467	130.74	1.1749	129.61	129.32	130.49	-1.1249					50	23	3	0	0	0	0.71267	1	10409	10409		40.778	1.972	1	153750	+		52097	28064	43124	43156	56479	56479					0.08290789522857267
RVSLHPYKKK	10	Unmodified	_RVSLHPYKKK_					0	0	0		AluJb_dup120393|chr20:34258955-34259234:+|1.6491951505596367|0.0068482995500215|7.91|394.0|5|2|sense	AluJb_dup120393|chr20:34258955-34259234:+|1.6491951505596367|0.0068482995500215|7.91|394.0|5|2|sense	AluJb_dup120393|chr20:34258955-34259234:+|1.6491951505596367|0.0068482995500215|7.91|394.0|5|2|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	628.3820190429688	2	628.385314	1254.75608	-4.0512	-0.0025457	-0.39444	-0.00024786	-4.4456	-0.0027935	628.3849132400738	150.53	4.7174	149.58	148	152.71	-0.95647					178	94	2	0	0	0	0.7759	1	12769	12769		21.96	4.4919	1	419100			52098	65	43125	43157	56480	56480					0.13888753204946624
RVSLLPGLL	9	Unmodified	_RVSLLPGLL_					0	0	0		AluJb_dup53617|chr8:11864197-11864505:+|1.3540017899668186|0.1824579183855656|2.89|429.0|17|3|anti-sense	AluJb_dup53617|chr8:11864197-11864505:+|1.3540017899668186|0.1824579183855656|2.89|429.0|17|3|anti-sense	AluJb_dup53617|chr8:11864197-11864505:+|1.3540017899668186|0.1824579183855656|2.89|429.0|17|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.3189697265625	2	484.318577	966.622602	0.062107	3.008E-05	-0.5238	-0.00025369	-0.4617	-0.00022361	484.31822110517277	116.03	1.267	114.67	114.4	115.67	-1.3645					57	24	4	0	0	0	0.51865	1	10847	10847		40.778	14.085	1	196150			52099	66	43126	43158	56481	56481					0.13795514099274442
RVSNKYSLEM	10	Unmodified	_RVSNKYSLEM_					0	0	0		tr|A0A7D6ZW54|A0A7D6ZW54_9CLOTPhosphatepropanoyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17660PE=3SV=1	tr|A0A7D6ZW54|A0A7D6ZW54_9CLOTPhosphatepropanoyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17660PE=3SV=1	tr|A0A7D6ZW54|A0A7D6ZW54_9CLOTPhosphatepropanoyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17660PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	613.8159790039062	2	613.81353	1225.61251	1.6928	0.0010391	0.21558	0.00013233	1.9084	0.0011714	613.813797553342	122.74	4.5122	122.74	122.4	126.91	0					278	100	6	0	0	0	0.42962	1	14308	14308		64.207	13.015	1	51750000			52100	35826	43127	43159	56482	56482					0.00872538311750759
RVSRAPLSDQ	10	Unmodified	_RVSRAPLSDQ_					0	0	0			REV__ENST00000399824.6_2_22:30752827-30753013:+|nuORF	REV__ENST00000399824.6_2_22:30752827-30753013:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	564.8112182617188	2	564.809636	1127.60472	-2.1858	-0.0012346	3.688	0.002083	1.5023	0.00084849	564.8115908604212	146.02	1.2908	145.8	145.33	146.62	-0.22697					59	25	3	0	0	0	0.75313	1	14753	14753		24.519	7.1542	1	117310	+		52101	25394	43128	43160	56483	56483					0.04602147106470511
RVSRLLER	8	Unmodified	_RVSRLLER_					0	0	0		ENSG00000176058|ENST00000409012|TPRN	ENSG00000176058|ENST00000409012|TPRN	ENSG00000176058|ENST00000409012|TPRN	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.8250732421875	2	514.819807	1027.62506	-0.2589	-0.00013329	0.93656	0.00048216	0.67766	0.00034887	514.8195616995632	77.386	0.46825	75.597	75.364	75.832	-1.7894					11	8	2	0	0	0	0.028476	1	6415	6415		29.15	7.1897	1	28660			52102	7580	43129	43161	56484	56484					0.11235362556953987
RVSSARLRPVL	11	Unmodified	_RVSSARLRPVL_					0	0	0		tr|A0A553SIC2|A0A553SIC2_NIACITyrosine-proteinphosphataseOS=NialliacirculansOX=1397GN=CEQ21_14565PE=4SV=1	tr|A0A553SIC2|A0A553SIC2_NIACITyrosine-proteinphosphataseOS=NialliacirculansOX=1397GN=CEQ21_14565PE=4SV=1	tr|A0A553SIC2|A0A553SIC2_NIACITyrosine-proteinphosphataseOS=NialliacirculansOX=1397GN=CEQ21_14565PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	627.38525390625	2	627.39367	1252.77279	0.43836	0.00027503	2.2739	0.0014266	2.7122	0.0017016	627.3948837383276	164.5	0.42995	164.5	164.22	164.65	0					21	15	2	0	0	0	0.025861	1	19185	19185		17.468	0.75062	1	25621			52103	33365	43130	43162	56485	56485					0.15651254090948896
RVSTHRII	8	Unmodified	_RVSTHRII_					0	0	0			REV__nc|ENSG00000166689|Q6IQ23-3|PLEKHA7	REV__nc|ENSG00000166689|Q6IQ23-3|PLEKHA7	MSMS	OvCa99_classI_Rep5	1	491.3013610839844	2	491.30125	980.587947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.248	1	21.248	20.748	21.748	0								0	0	0	0.30129	1	101	101		13.775	0	1		+		52104	27121	43131	43163	56486	56486					0.09687691011185962
RVSVLQTPRR	10	Unmodified	_RVSVLQTPRR_					0	0	0		ENST00000407121.1_1_6:100023791-100023977:+|nuORF	ENST00000407121.1_1_6:100023791-100023977:+|nuORF	ENST00000407121.1_1_6:100023791-100023977:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.36962890625	2	606.370195	1210.72584	-1.3399	-0.00081245	0.36309	0.00022017	-0.97677	-0.00059228	606.3703052098949	148.27	2.4393	146.84	145.43	147.87	-1.4351					149	49	5	0	0	0	0.75313	1	14552	14552		24.519	0	1	591330			52105	11490	43132	43164	56487	56487					0.12890394539772387
RVTDEILHL	9	Unmodified	_RVTDEILHL_					0	0	0		ENSG00000115421|ENST00000238714|PAPOLG;PAPOLG|p.T602Hfs*16|1|0.05|ENSG00000115421|chr2:60793999-60794000|-/C|frameshift_variant;PAPOLA|p.F273Lfs*6|1|0.06|ENSG00000090060|chr14:96532631-96532632|-/A|frameshift_variant;nc|ENSG00000090060|P51003-2|PAPOLA;ENSG00000218823|ENST00000404991|PAPOLB;ENSG00000090060|ENST00000216277|PAPOLA;nc|ENSG00000115421|Q9BWT3-2|PAPOLG	ENSG00000115421|ENST00000238714|PAPOLG;nc|ENSG00000115421|Q9BWT3-2|PAPOLG	ENSG00000115421|ENST00000238714|PAPOLG	MULTI-MSMS	OvCa99_classI_Rep5	1	548.3124389648438	2	548.31148	1094.60841	2.6742	0.0014663	-0.67112	-0.00036798	2.0031	0.0010983	548.3110706164282	90.123	1.0937	90.123	89.763	90.857	0					72	26	5	0	0	0	0.094616	1	9664	9664		98.629	27.334	1	16494000			52106	3096;14975	43133	43165	56488	56488					0.06488816880346349
RVTGGFFKK	9	Unmodified	_RVTGGFFKK_					0	0	0		tr|A0A7D7A6N6|A0A7D7A6N6_9CLOTHydroxylaminereductaseOS=ClostridiumintestinaleOX=36845GN=hcpPE=3SV=1	tr|A0A7D7A6N6|A0A7D7A6N6_9CLOTHydroxylaminereductaseOS=ClostridiumintestinaleOX=36845GN=hcpPE=3SV=1	tr|A0A7D7A6N6|A0A7D7A6N6_9CLOTHydroxylaminereductaseOS=ClostridiumintestinaleOX=36845GN=hcpPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.3046875	2	520.306001	1038.59745	-2.1259	-0.0011061	-1.8853	-0.00098093	-4.0112	-0.0020871	520.3049655422371	49.989	1.4992	46.847	46.455	47.954	-3.1416					67	28	4	0	0	0	0.48047	1	2847	2847		44.377	7.2181	1	772500			52107	36199	43134	43166	56489	56489					0.07969459296691639
RVTKIAVHS	9	Unmodified	_RVTKIAVHS_					0	0	0			REV__ENSG00000175264|ENST00000308064|CHST1	REV__ENSG00000175264|ENST00000308064|CHST1	MULTI-MSMS	OvCa9_classI_Rep3	3	505.808349609375	2	505.808908	1009.60326	-0.53174	-0.00026896	-0.036462	-1.8443E-05	-0.5682	-0.0002874	505.8088540702735	73.091	1.7346	70.604	70.183	71.917	-2.4873					60	34	2	0	0	0	0.42676	1	3554	3554		49.442	3.4896	1	714830	+		52108	21885	43135	43167	56490	56490					0.098845578083683
RVTLEVGKV	9	Unmodified	_RVTLEVGKV_					0	0	0		ENSG00000107223|ENST00000224073|EDF1;nc|ENSG00000107223|O60869-2|EDF1;nc|ENSG00000107223|O60869-3|EDF1	ENSG00000107223|ENST00000224073|EDF1	ENSG00000107223|ENST00000224073|EDF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.2884216308594	2	500.811116	999.60768	0.18279	9.1545E-05	-1.0365	-0.0005191	-0.85373	-0.00042756	500.810736526011	46.204	0.47762	46.204	46.024	46.501	0					17	10	2	0	0	0	0.027462	1	3259	3259		39.253	6.4404	1	215050			52109	2597	43136	43168	56491	56491					0.10786022231286552
RVTLYGVFTI	10	Unmodified	_RVTLYGVFTI_					0	0	0		nc|ENSG00000152332|Q8TAS1-3|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.766845703125	2	584.839874	1167.66519	-0.44912	-0.00026266	4.3215	0.0025274	3.8724	0.0022647	584.8424528454195	40.885	0.3958	40.885	40.754	41.149	0					12	8	2	0	0	0	0.026931	1	2533	2533		37.812	8.6415	1	70362			52110	15099	43137	43169	56492	56492					0.08806864436860451
RVTQFGLL	8	Unmodified	_RVTQFGLL_					0	0	0			REV__ENST00000528984.5_1_11:46678586-46685654:+|nuORF	REV__ENST00000528984.5_1_11:46678586-46685654:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	467.2801818847656	2	467.279452	932.544351	-0.47932	-0.00022397	0.43644	0.00020394	-0.042879	-2.0036E-05	467.2795250703273	97.402	0.74762	95.642	95.362	96.11	-1.7595					48	14	4	0	0	0	0.66704	1	6446	6446		50.025	0	1	638550	+		52111	27182	43138	43170	56493	56493					0.07538081514042005
RVTRKHLKTI	10	Unmodified	_RVTRKHLKTI_					0	0	0		ENST00000443748.6_2_10:94675659-94700499:+|nuORF	ENST00000443748.6_2_10:94675659-94700499:+|nuORF	ENST00000443748.6_2_10:94675659-94700499:+|nuORF	MSMS	OvCa9_classI_Rep2	2	626.3908081054688	2	626.404038	1250.79352	NaN	NaN	NaN	NaN	NaN	NaN	NaN	163.18	1	162.95	162.45	163.45	-0.22696								0	0	0	0.14725	1	16624	16624		14.865	6.6336	1				52112	11954	43139	43171	56494	56494					0.17815844470578668
RVTSKALEL	9	Unmodified	_RVTSKALEL_					0	0	0		nc|ENSG00000100979|P55058-3|PLTP;nc|ENSG00000100979|P55058-2|PLTP;ENSG00000100979|ENST00000372431|PLTP	nc|ENSG00000100979|P55058-3|PLTP	nc|ENSG00000100979|P55058-3|PLTP	MULTI-MSMS	OvCa9_classI_Rep2	2	508.807373046875	2	508.808574	1015.60259	-1.1049	-0.00056221	0.50065	0.00025473	-0.6043	-0.00030747	508.8087276313577	60.665	1.7306	57.895	57.396	59.126	-2.7702					90	32	4	0	0	0	0.13326	3	4463	4458;4463;4493		88.177	26.486	1	689010			52113	2127	43140	43172	56495;56496;56497	56496					0.09541718368643615
RVTSKALEL	9	Unmodified	_RVTSKALEL_					0	0	0		nc|ENSG00000100979|P55058-3|PLTP;nc|ENSG00000100979|P55058-2|PLTP;ENSG00000100979|ENST00000372431|PLTP	nc|ENSG00000100979|P55058-3|PLTP	nc|ENSG00000100979|P55058-3|PLTP	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.8087158203125	2	508.808574	1015.60259	-0.097256	-4.9485E-05	-0.99901	-0.0005083	-1.0963	-0.00055779	508.80800373919783	61.495	1.5421	58.037	57.766	59.309	-3.4577					76	31	4	0	0	0	0.22035	1	4209	4209		72.879	7.4139	1	1222700			52114	2127	43140	43172	56498	56498					0.09541718368643615
RVTVSHTGYF	10	Unmodified	_RVTVSHTGYF_					0	0	0		tr|A0A553SIW4|A0A553SIW4_NIACIGlycosyltransferasefamily2proteinOS=NialliacirculansOX=1397GN=CEQ21_15635PE=4SV=1	tr|A0A553SIW4|A0A553SIW4_NIACIGlycosyltransferasefamily2proteinOS=NialliacirculansOX=1397GN=CEQ21_15635PE=4SV=1	tr|A0A553SIW4|A0A553SIW4_NIACIGlycosyltransferasefamily2proteinOS=NialliacirculansOX=1397GN=CEQ21_15635PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	583.80029296875	2	583.80128	1165.58801	0.97841	0.0005712	1.9394	0.0011322	2.9178	0.0017034	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.84881	1	1502	1502		12.812	1.3007	1	155970			52115	33433	43141	43173	56499	56499					0.011836462205110365
RVTYPAKAK	9	Unmodified	_RVTYPAKAK_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3107299804688	2	517.311284	1032.60801	0.010128	5.2392E-06	-0.21635	-0.00011192	-0.20622	-0.00010668	517.3110169376656	31.938	1.2365	29.228	28.986	30.222	-2.7097					60	24	4	0	0	0	0.48047	1	1007	1007		44.377	1.981	1	305470			52116	3322	43142	43174	56500	56500					0.09301441951129163
RVVARQQLH	9	Unmodified	_RVVARQQLH_					0	0	0		ENSG00000178301|ENST00000313578|AQP11	ENSG00000178301|ENST00000313578|AQP11	ENSG00000178301|ENST00000313578|AQP11	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8298950195312	2	553.830706	1105.64686	-0.8401	-0.00046527	-0.49633	-0.00027488	-1.3364	-0.00074015	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.69895	1	14366	14366		18.324	0	1	245610			52117	7748	43143	43175	56501	56501					0.09826167305527633
RVVGILQKN	9	Unmodified	_RVVGILQKN_					0	0	0		ENST00000565281.5_1_15:66585934-66615040:+|nuORF;nc|ENSG00000166938|Q8TF46-3|DIS3L;ENST00000564909.5_1_15:66585934-66618751:+|nuORF;nc|ENSG00000166938|Q8TF46-2|DIS3L;nc|ENSG00000166938|Q8TF46-4|DIS3L;ENSG00000166938|ENST00000319212|DIS3L	ENST00000565281.5_1_15:66585934-66615040:+|nuORF	ENST00000565281.5_1_15:66585934-66615040:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	513.8253173828125	2	513.824558	1025.63456	-0.30876	-0.00015865	-0.42303	-0.00021736	-0.73179	-0.00037601	513.8242497771212	77.235	1.8594	75.445	74.946	76.805	-1.7894					108	35	5	0	0	0	0.56889	1	6421	6421		35.618	3.6634	1	840920			52118	6737	43144	43176	56502	56502					0.12277130842471706
RVVGIWTKN	9	Unmodified	_RVVGIWTKN_					0	0	0		nc|ENSG00000139718|Q9UPS6-2|SETD1B;ENSG00000139718|ENST00000604567|SETD1B	nc|ENSG00000139718|Q9UPS6-2|SETD1B	nc|ENSG00000139718|Q9UPS6-2|SETD1B	MULTI-MSMS	OvCa9_classI_Rep2	2	536.8178100585938	2	536.816733	1071.61891	-1.1053	-0.00059333	3.5101	0.0018843	2.4048	0.0012909	536.8184593215832	67.034	1.4822	64.373	64.099	65.581	-2.661					79	29	4	0	0	0	0.50149	1	5239	5239		42.396	1.8235	1	1131500			52119	4797	43145	43177	56503	56503					0.08596844325415987
RVVKLNEV	8	Unmodified	_RVVKLNEV_					0	0	0		nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1;ENST00000481423.1_1_1:110560194-110562192:+|nuORF	nc|ENSG00000168710|O43865-2|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	MULTI-MSMS	OvCa99_classI_Rep5	1	478.79876708984375	2	478.798009	955.581465	-0.23535	-0.00011269	0.24772	0.00011861	0.012365	5.9204E-06	478.7980041972316	48.817	0.65993	48.817	48.585	49.245	0					23	14	2	0	0	0	0.71369	1	3613	3613		40.573	1.7665	1	1162200			52120	6935	43146	43178	56504	56504					0.10189753059796658
RVVKRLAGIP	10	Unmodified	_RVVKRLAGIP_					0	0	0		ENSG00000198720|ENST00000394859|ANKRD13B	ENSG00000198720|ENST00000394859|ANKRD13B	ENSG00000198720|ENST00000394859|ANKRD13B	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.868896484375	2	554.8693	1107.72405	1.2589	0.0006985	-1.5027	-0.00083378	-0.24381	-0.00013528	554.8683554320133	36.062	1.2954	33.213	32.99	34.285	-2.849					70	25	4	0	0	0	0.69986	1	1225	1225		30.504	1.3541	1	499100			52121	8855	43147	43179	56505	56505					0.1744938552185431
RVVLERVSF	9	Unmodified	_RVVLERVSF_					0	0	0			REV__tr|A0A7D6VUJ5|A0A7D6VUJ5_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_20835PE=4SV=1	REV__tr|A0A7D6VUJ5|A0A7D6VUJ5_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_20835PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	552.8310546875	2	552.82984	1103.64513	2.0706	0.0011447	-0.86199	-0.00047653	1.2086	0.00066815	552.8293630880819	77.276	2.6369	77.276	76.799	79.436	0					170	63	5	0	0	0	0.40667	1	7751	7751		51.335	7.2187	1	53644000	+		52122	31685	43148	43180	56506	56506					0.09745113496887825
RVVLFILNAI	10	Unmodified	_RVVLFILNAI_					0	0	0		nc|ENSG00000293555|Q8N8A8|FAM169BP	nc|ENSG00000293555|Q8N8A8|FAM169BP	nc|ENSG00000293555|Q8N8A8|FAM169BP	MULTI-SECPEP	OvCa9_classI_Rep3	3	578.8541259765625	2	579.373884	1156.73321	-1.181	-0.00068421	-0.33052	-0.00019149	-1.5115	-0.00087571	579.3737298117765	74.182	0.24829	71.695	71.471	71.719	-2.4873					7	4	2	0	0	0	0.027088	1	3659	3659		34.173	2.6427	1	12284			52123	15408	43149	43181	56507	56507					0.16111734087508012
RVVRFLSPPAL	11	Unmodified	_RVVRFLSPPAL_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MSMS	OvCa9_classI_Rep3	3	627.884521484375	2	627.88769	1253.76083	-6.0951	-0.003827	2.0591	0.0012929	-4.036	-0.0025342	627.8888127520664	159.21	1.3634	157.94	157.66	159.03	-1.267					65	26	3	0	0	0	0.70587	1	13762	13762		39.253	20.149	1	154460			52124	4133	43150	43182	56508	56508					0.14409637347762327
RVVRVAVNTQP	11	Unmodified	_RVVRVAVNTQP_					0	0	0			REV__tr|A0A7D6ZXC8|A0A7D6ZXC8_9CLOTCarboxypeptidaseregulatory-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22495PE=4SV=1	REV__tr|A0A7D6ZXC8|A0A7D6ZXC8_9CLOTCarboxypeptidaseregulatory-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22495PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.86962890625	2	619.870028	1237.7255	-3.1194	-0.0019336	2.0434	0.0012667	-1.076	-0.00066696	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.72466	1	15158	15158		19.997	3.5236	1	806750	+		52125	32327	43151	43183	56509	56509					0.11614974819940471
RVVSAATQLR	10	Unmodified	_RVVSAATQLR_					0	0	0		ENST00000593129.1_1_19:45988968-45992276:-|nuORF;nc|ENSG00000125744|O75298-3|RTN2;nc|ENSG00000125744|O75298-2|RTN2;ENSG00000125744|ENST00000245923|RTN2	ENST00000593129.1_1_19:45988968-45992276:-|nuORF	ENST00000593129.1_1_19:45988968-45992276:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.83154296875	2	550.830372	1099.64619	0.62359	0.00034349	-1.0898	-0.00060028	-0.46618	-0.00025679	550.82969174874	33.221	1.3886	30.526	30.203	31.591	-2.6954					53	27	2	0	0	0	0.55109	1	859	859		47.96	10.148	1	344190			52126	3730	43152	43184	56510	56510					0.10035327865784893
RVVSRPQRL	9	Unmodified	_RVVSRPQRL_					0	0	0		nc|ENSG00000130038|Q9BSW2-1|CRACR2A;ENSG00000130038|ENST00000440314|CRACR2A	nc|ENSG00000130038|Q9BSW2-1|CRACR2A	nc|ENSG00000130038|Q9BSW2-1|CRACR2A	MULTI-MSMS	OvCa99_classI_Rep5	1	555.8463134765625	2	555.846356	1109.67816	0.33885	0.00018835	-0.95172	-0.00052901	-0.61286	-0.00034066	555.8456850389377	20.798	0.20114	20.798	20.672	20.874	0					7	5	2	0	0	0	0.59259	1	59	59		32.812	7.2384	1	35130			52127	15010	43153	43185	56511	56511					0.12770740339624354
RVVSVLTVL	9	Unmodified	_RVVSVLTVL_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211897|P01860|IGHG3	nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	MULTI-MSMS	OvCa9_classI_Rep2	2	493.3244323730469	2	493.32386	984.633166	0.32462	0.00016014	-0.47453	-0.0002341	-0.14991	-7.3954E-05	493.3234613432452	114.6	1.4806	114.48	114.16	115.64	-0.11777					70	29	3	0	0	0	0.44568	1	10912	10912		47.657	0	1	205500			52128	15299;15300	43154	43186	56512	56512					0.14023496753691234
RVVSVLTVL	9	Unmodified	_RVVSVLTVL_					0	0	0		nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211897|P01860-1|IGHG3;nc|ENSG00000211892|P01861-1|IGHG4;nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211897|P01860|IGHG3	nc|ENSG00000211896|P01857-1|IGHG1;nc|ENSG00000211896|P01857|IGHG1	nc|ENSG00000211896|P01857-1|IGHG1	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.3234558105469	2	493.32386	984.633166	0.2425	0.00011963	-1.1229	-0.00055394	-0.88037	-0.00043431	493.3231302299978	116.17	1.6901	114.8	114.5	116.19	-1.3645					62	32	3	0	0	0	0.44568	2	10870	10823;10870		47.657	10.498	1	214860			52129	15299;15300	43154	43186	56513;56514	56514					0.14023496753691234
RVVYLEHVV	9	Unmodified	_RVVYLEHVV_					0	0	0		nc|ENSG00000140479|P29122-6|PCSK6;nc|ENSG00000140479|P29122-5|PCSK6;nc|ENSG00000140479|P29122-4|PCSK6;nc|ENSG00000140479|P29122-2|PCSK6;nc|ENSG00000140479|P29122-8|PCSK6;ENSG00000140479|ENST00000611716|PCSK6;nc|ENSG00000140479|P29122-7|PCSK6;ENST00000560902.5_1_15:101872079-101922328:-|nuORF;ENST00000558154.1_1_15:101906377-101922391:-|nuORF	nc|ENSG00000140479|P29122-6|PCSK6	nc|ENSG00000140479|P29122-6|PCSK6	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.3052978515625	2	557.324391	1112.63423	0.28005	0.00015608	-4.2853	-0.0023883	-4.0052	-0.0022322	557.3221234837875	62.158	0.74913	62.158	61.912	62.661	0					21	17	2	0	0	0	0.027462	1	5544	5544		34.173	7.3764	1	337620			52130	4847	43155	43187	56515	56515					0.08241711122605011
RVWFFVLAI	9	Unmodified	_RVWFFVLAI_					0	0	0		L1PA3_dup2401|chr4:19593708-19594375:+|1.878456162297772|0.00841233674922|7.8|426.0|33|2|anti-sense	L1PA3_dup2401|chr4:19593708-19594375:+|1.878456162297772|0.00841233674922|7.8|426.0|33|2|anti-sense	L1PA3_dup2401|chr4:19593708-19594375:+|1.878456162297772|0.00841233674922|7.8|426.0|33|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8432006835938	2	575.84222	1149.66989	-0.33973	-0.00019563	2.514	0.0014477	2.1743	0.001252	575.8433458482052	142.38	3.7668	140.93	139.05	142.82	-1.4532					179	72	3	0	0	0	0.58665	1	14064	14064		33.516	3.0119	1	165140			52131	14686	43156	43188	56516	56516					0.1010379337028553
RVWFPDMMP	9	Unmodified	_RVWFPDMMP_					0	0	0		ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	ENSG00000005812|ENST00000355619|FBXL3	MULTI-MSMS	OvCa9_classI_Rep3	3	589.7785034179688	2	589.777905	1177.54126	0.18372	0.00010835	1.8582	0.0010959	2.042	0.0012043	589.7789289906962	126.64	1.831	125.57	124.92	126.75	-1.0715					52	34	2	0	0	0	0.55588	1	9908	9908		37.159	0.71236	1	186880			52132	860	43157	43189	56517	56517					-0.040412529266177444
RVWNTLSI	8	Unmodified	_RVWNTLSI_					0	0	0		ENSG00000082516|ENST00000285873|GEMIN5	ENSG00000082516|ENST00000285873|GEMIN5	ENSG00000082516|ENST00000285873|GEMIN5	MULTI-MSMS	OvCa9_classI_Rep2	2	494.7818908691406	2	494.782359	987.550165	-1.0978	-0.00054319	0.84812	0.00041963	-0.24972	-0.00012356	494.7826271232193	61.627	1.8441	58.867	58.04	59.884	-2.7593					92	35	4	0	0	0	0.50747	1	4578	4578		76.774	10.971	1	363280			52133	1682	43158	43190	56518	56518					0.05589180025708629
RVYDLGKKK	9	Unmodified	_RVYDLGKKK_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OvCa9_classI_Rep2	2	553.838134765625	2	553.837665	1105.66078	-0.16387	-9.0759E-05	0.099088	5.4878E-05	-0.064786	-3.5881E-05	553.8374433244098	33.154	0.99523	30.444	30.222	31.218	-2.7097					38	19	3	0	0	0	0.679	1	1163	1163		22.58	0	1	122440			52134	8533	43159	43191	56519	56519					0.11217400013947554
RVYERILFMPR	11	Unmodified	_RVYERILFMPR_					0	0	0		ENSG00000278685|ENST00000615129|IQCA1L	ENSG00000278685|ENST00000615129|IQCA1L	ENSG00000278685|ENST00000615129|IQCA1L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.2890319824219	3	493.946618	1478.81802	0.74984	0.00037038	-0.040339	-1.9925E-05	0.7095	0.00035045	493.94663358228337	67.117	0.64474	63.627	63.442	64.087	-3.4902					15	12	2	0	0	0	0.026364	1	4919	4919		13.508	0	1	38428			52135	9592	43160	43192	56520	56520					0.09776736561798316
RVYGGLTTK	9	Unmodified	_RVYGGLTTK_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	OvCa9_classI_Rep2	2	497.78759765625	2	497.787641	993.56073	-0.10832	-5.392E-05	-0.2741	-0.00013645	-0.38242	-0.00019036	497.78737708848206	45.132	1.745	42.422	42.049	43.794	-2.7097					77	34	4	0	0	0	0.094616	3	2619	2619;2626;2633		98.629	7.8527	1	697540			52136	7083	43161	43193	56521;56522;56523	56521					0.06369162680118734
RVYGGLTTK	9	Unmodified	_RVYGGLTTK_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.78851318359375	2	497.787641	993.56073	-1.2056	-0.00060013	0.3714	0.00018488	-0.83419	-0.00041525	497.78782712812034	45.293	2.3345	42.254	41.971	44.306	-3.0385					103	44	5	0	0	0	0.027568	3	2311	2299;2311;2336		138.06	42.247	1	2858900			52137	7083	43161	43193	56524;56525;56526	56525					0.06369162680118734
RVYGGLTTKV	10	Unmodified	_RVYGGLTTKV_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	OvCa99_classI_Rep5	1	547.322265625	2	547.321848	1092.62914	-0.12525	-6.8551E-05	-0.37312	-0.00020422	-0.49837	-0.00027277	547.3215284304052	56.926	0.97841	56.926	56.459	57.438	0					53	22	4	0	0	0	0.24109	1	4740	4740		88.177	10.859	1	3446300			52138	7083	43162	43194	56527	56527					0.0865340725997612
RVYGSFLVN	9	Unmodified	_RVYGSFLVN_					0	0	0		ENSG00000163466|ENST00000315717|ARPC2;ENST00000489598.5_1_2:219082193-219099125:+|nuORF;ENST00000491780.5_1_2:219082193-219100082:+|nuORF;ENST00000465395.5_1_2:219082193-219103574:+|nuORF	ENSG00000163466|ENST00000315717|ARPC2	ENSG00000163466|ENST00000315717|ARPC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.7667236328125	2	527.787641	1053.56073	-1.6401	-0.00086565	1.5648	0.00082586	-0.075385	-3.9787E-05	527.7878305365304	92.822	0.65582	90.314	89.857	90.513	-2.5072					17	12	2	0	0	0	0.027461	1	8067	8067		58.782	12.83	1	21897			52139	6310	43163	43195	56528	56528					0.03609162680118061
RVYIGRLSY	9	Unmodified	_RVYIGRLSY_					0	0	0		SRSF4|p.A127Qfs*4|1|0.18|ENSG00000116350|chr1:29154895-29154895|C/-|frameshift_variant;nc|ENSG00000124193|Q13247-2|SRSF6;nc|ENSG00000124193|Q13247-3|SRSF6;ENSG00000124193|ENST00000244020|SRSF6;ENSG00000116350|ENST00000373795|SRSF4	SRSF4|p.A127Qfs*4|1|0.18|ENSG00000116350|chr1:29154895-29154895|C/-|frameshift_variant	SRSF4|p.A127Qfs*4|1|0.18|ENSG00000116350|chr1:29154895-29154895|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	563.8224487304688	2	563.822015	1125.62948	-0.32417	-0.00018277	-0.091446	-5.1559E-05	-0.41561	-0.00023433	563.8218291912547	76.76	2.2662	74.971	74.635	76.901	-1.7894					111	43	5	0	0	0	0.22621	5	6363	6354;6357;6363;6369;6378		71.877	31.099	1	1216600			52140	3175	43164	43196	56529;56530;56531;56532;56533	56531					0.07168826979864207
RVYIGRLSY	9	Unmodified	_RVYIGRLSY_					0	0	0		SRSF4|p.A127Qfs*4|1|0.18|ENSG00000116350|chr1:29154895-29154895|C/-|frameshift_variant;nc|ENSG00000124193|Q13247-2|SRSF6;nc|ENSG00000124193|Q13247-3|SRSF6;ENSG00000124193|ENST00000244020|SRSF6;ENSG00000116350|ENST00000373795|SRSF4	SRSF4|p.A127Qfs*4|1|0.18|ENSG00000116350|chr1:29154895-29154895|C/-|frameshift_variant	SRSF4|p.A127Qfs*4|1|0.18|ENSG00000116350|chr1:29154895-29154895|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	563.8218994140625	2	563.822015	1125.62948	-1.0763	-0.00060683	0.60197	0.00033941	-0.4743	-0.00026742	563.8222320836983	77.244	3.4816	74.872	74.348	77.829	-2.3715					149	68	6	0	0	0	0.3249	4	4026	4021;4026;4038;4051		60.118	13.684	1	1334000			52141	3175	43164	43196	56534;56535;56536;56537	56535					0.07168826979864207
RVYIGRLSY	9	Unmodified	_RVYIGRLSY_					0	0	0		SRSF4|p.A127Qfs*4|1|0.18|ENSG00000116350|chr1:29154895-29154895|C/-|frameshift_variant;nc|ENSG00000124193|Q13247-2|SRSF6;nc|ENSG00000124193|Q13247-3|SRSF6;ENSG00000124193|ENST00000244020|SRSF6;ENSG00000116350|ENST00000373795|SRSF4	SRSF4|p.A127Qfs*4|1|0.18|ENSG00000116350|chr1:29154895-29154895|C/-|frameshift_variant	SRSF4|p.A127Qfs*4|1|0.18|ENSG00000116350|chr1:29154895-29154895|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.8222045898438	2	563.822015	1125.62948	1.2021	0.00067775	-2.0052	-0.0011306	-0.80314	-0.00045283	563.8207497096755	77.953	2.927	75.136	74.777	77.704	-2.8165					121	60	5	0	0	0	0.40818	2	6248	6248;6259		51.193	13.685	1	1673800			52142	3175	43164	43196	56538;56539	56538					0.07168826979864207
RVYIIYSRG	9	Unmodified	_RVYIIYSRG_					0	0	0			REV__nc|ENSG00000186628|A1L4K1-2|FSD2	REV__nc|ENSG00000186628|A1L4K1-2|FSD2	MULTI-MSMS	OvCa9_classI_Rep3	3	563.8211059570312	2	563.822015	1125.62948	-1.0763	-0.00060683	0.60197	0.00033941	-0.4743	-0.00026742	563.8222320836983	77.244	3.4816	74.872	74.348	77.829	-2.3715					149	68	6	0	0	0	0.34132	1	4032	4032		58.23	5.2932	1	1334000	+		52143	22602	43165	43197	56540	56540					0.0716882697984147
RVYIIYSRG	9	Unmodified	_RVYIIYSRG_					0	0	0			REV__nc|ENSG00000186628|A1L4K1-2|FSD2	REV__nc|ENSG00000186628|A1L4K1-2|FSD2	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.8228149414062	2	563.822015	1125.62948	1.2021	0.00067775	-2.0052	-0.0011306	-0.80314	-0.00045283	563.8207497096755	77.953	2.927	75.136	74.777	77.704	-2.8165					121	60	5	0	0	0	0.40818	1	6286	6286		51.193	6.8155	1	1673800	+		52144	22602	43165	43197	56541	56541					0.0716882697984147
RVYLDSVSTE	10	Unmodified	_RVYLDSVSTE_					0	0	0		ENST00000545947.5_1_3:49507862-49514321:+|nuORF	ENST00000545947.5_1_3:49507862-49514321:+|nuORF	ENST00000545947.5_1_3:49507862-49514321:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	584.356201171875	2	584.79586	1167.57717	-1.4738	-0.0008619	1.1062	0.00064689	-0.36767	-0.00021501	584.7963221844633	140.96	0.9389	140.74	140.38	141.32	-0.22696					29	18	3	0	0	0	0.027315	1	14178	14178		19.997	5.3327	1	31615			52145	13528	43166	43198	56542	56542					8.199055582736037E-05
RVYLLKTVYLF	11	Unmodified	_RVYLLKTVYLF_					0	0	0		ENST00000421254.1_1_1:117569228-117575092:-|nuORF	ENST00000421254.1_1_1:117569228-117575092:-|nuORF	ENST00000421254.1_1_1:117569228-117575092:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	472.2821350097656	3	472.286746	1413.83841	-6.0447	-0.0028549	-0.27842	-0.00013149	-6.3232	-0.0029863	472.28675973301637	159.08	3.3809	157.81	156.71	160.09	-1.267					177	72	4	0	0	0	0.72516	1	13674	13674		13.508	0	1	110830			52146	11680	43167	43199	56543	56543					0.14804230493268733
RVYNGRDH	8	Unmodified	_RVYNGRDH_					0	0	0			REV__ENSG00000160957|ENST00000617875|RECQL4	REV__ENSG00000160957|ENST00000617875|RECQL4	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.8153381347656	2	508.754664	1015.49478	-0.74936	-0.00038124	2.918	0.0014846	2.1687	0.0011033	508.75656852732186	75.109	0.57301	73.138	72.999	73.572	-1.9711					13	10	2	0	0	0	0.028476	1	6171	6171		44.117	3.5442	1	16880	+		52147	16233	43168	43200	56544	56544					-0.0123523344205978
RVYSPPEWISR	11	Unmodified	_RVYSPPEWISR_					0	0	0		ENST00000485431.1_1_X:48771410-48771858:-|nuORF;ENSG00000102096|ENST00000376509|PIM2	ENST00000485431.1_1_X:48771410-48771858:-|nuORF	ENST00000485431.1_1_X:48771410-48771858:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.2806091308594	3	463.913971	1388.72008	-0.36131	-0.00016762	2.0256	0.00093971	1.6643	0.00077209	463.91404169997867	83.519	1.2619	80.856	80.242	81.504	-2.6629					51	25	3	0	0	0	0.026015	1	6940	6940		33.542	13.915	1	76009			52148	2222	43169	43201	56545	56545					0.04127251237446217
RWAHQLLP	8	Unmodified	_RWAHQLLP_					0	0	0		ENST00000577783.2_1_17:77079170-77080166:+|nuORF	ENST00000577783.2_1_17:77079170-77080166:+|nuORF	ENST00000577783.2_1_17:77079170-77080166:+|nuORF	MSMS	OvCa99_classI_Rep5	1	510.7889709472656	2	510.790518	1019.56648	NaN	NaN	NaN	NaN	NaN	NaN	NaN	22.549	1	22.549	22.049	23.049	0								0	0	0	0.30129	1	227	227		12.959	2.0936	1				52149	13961	43170	43202	56546	56546					0.05748305982456259
RWETAARRGP	10	Unmodified	_RWETAARRGP_					0	0	0		ENST00000468037.1_1_6:31660724-31670409:-|nuORF	ENST00000468037.1_1_6:31660724-31670409:-|nuORF	ENST00000468037.1_1_6:31660724-31670409:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	600.3224487304688	2	600.323245	1198.63194	-2.8982	-0.0017399	3.2055	0.0019243	0.30727	0.00018446	600.3250269871453	152.11	1.1286	150.68	150.36	151.49	-1.435					68	24	4	0	0	0	0.67931	1	15049	15049		32.812	4.9302	1	134150			52150	12319	43171	43203	56547	56547					0.04056675437504964
RWFDKSFTF	9	Unmodified	_RWFDKSFTF_					0	0	0		ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A;CPT1A|p.L518Sfs*39|1|0.36|ENSG00000110090|chr11:68775339-68775340|-/A|frameshift_variant	ENSG00000110090|ENST00000265641|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	MULTI-MSMS	OvCa99_classI_Rep5	1	617.3081665039062	2	617.306198	1232.59784	1.599	0.00098706	0.63234	0.00039035	2.2313	0.0013774	617.3064189997032	107.15	0.9686	107.15	106.85	107.82	0					78	22	5	0	0	0	0.26076	1	12098	12098		67.494	21.037	1	6004200			52151	2757	43172	43204	56548	56548					-0.009151657741085728
RWFDYLWTNKK	11	Unmodified	_RWFDYLWTNKK_					0	0	0		ENSG00000183862|ENST00000329903|CNGA2	ENSG00000183862|ENST00000329903|CNGA2	ENSG00000183862|ENST00000329903|CNGA2	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.3326416015625	3	519.605137	1555.79358	0.59694	0.00031017	3.1294	0.001626	3.7263	0.0019362	519.606650999916	71.998	0.93833	69.491	69.174	70.112	-2.5071					22	17	2	0	0	0	0.026444	1	5854	5854		15.337	4.7507	1	16189			52152	8119	43173	43205	56549	56549					0.03791799679925134
RWFGPQCYH	9	Unmodified	_RWFGPQCYH_					0	0	0			REV__ENSG00000142233|ENST00000270235|NTN5	REV__ENSG00000142233|ENST00000270235|NTN5	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.2608642578125	2	597.269093	1192.52363	-5.9967	-0.0035816	-3.7786	-0.0022568	-9.7753	-0.0058385	597.2665348353147	160.37	1.8705	158.76	158.37	160.24	-1.6101					114	42	4	0	0	0	0.69895	1	15901	15901		18.324	1.8513	1	104970	+		52153	19777	43174	43206	56550	56550					-0.06492832137269033
RWFLASSRVR	10	Unmodified	_RWFLASSRVR_					0	0	0			REV__ENST00000221859.8_1_19:36605839-36605938:-|nuORF	REV__ENST00000221859.8_1_19:36605839-36605938:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	639.3628540039062	2	639.364913	1276.71527	-4.8018	-0.0030701	2.0149	0.0012882	-2.7869	-0.0017818	639.3660260364965	154.07	1.1512	153.84	153.46	154.62	-0.22696					54	23	3	0	0	0	0.70152	1	15673	15673		30.318	4.7437	1	99157	+		52154	23747	43175	43207	56551	56551					0.08798411885345558
RWFQPAIPSW	10	Unmodified	_RWFQPAIPSW_					0	0	0		ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;ENST00000591563.5_1_17:73828844-73835996:-|nuORF	ENSG00000092929|ENST00000207549|UNC13D	ENSG00000092929|ENST00000207549|UNC13D	MULTI-MSMS	OvCa99_classI_Rep5	1	644.3365478515625	2	644.33529	1286.65603	2.0123	0.0012966	-0.83026	-0.00053496	1.1821	0.00076164	644.3347539343018	129.3	2.079	129.3	128.98	131.06	0					136	43	5	0	0	0	0.20836	1	14998	14998		93.143	27.986	1	7840100			52155	1903	43176	43208	56552	56552					0.024165158711866752
RWFWLLPV	8	Unmodified	_RWFWLLPV_					0	0	0		HEATR1|p.P2064Hfs*2|1|0.04|ENSG00000119285|chr1:236553627-236553627|G/-|frameshift_variant;ENSG00000119285|ENST00000366582|HEATR1;HEATR1|p.G1956Wfs*9|1|0.04|ENSG00000119285|chr1:236555353-236555354|-/A|frameshift_variant	HEATR1|p.P2064Hfs*2|1|0.04|ENSG00000119285|chr1:236553627-236553627|G/-|frameshift_variant	HEATR1|p.P2064Hfs*2|1|0.04|ENSG00000119285|chr1:236553627-236553627|G/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.2924194335938	2	558.821287	1115.62802	1.3617	0.00076097	3.3922	0.0018956	4.7539	0.0026566	559.3241414327982	124.13	1.056	124.13	123.83	124.89	0					61	22	4	0	0	0	0.028476	1	14311	14311		35.201	14.254	1	489090			52156	3350	43177	43209	56553	56553					0.07483237681731225
RWGAPREW	8	Unmodified	_RWGAPREW_					0	0	0			REV__MLT2B4_dup3464|chr13:48629362-48629529:-|1.3380693137031785|0.0001284221296633|13.35|312.0|10|1|anti-sense	REV__MLT2B4_dup3464|chr13:48629362-48629529:-|1.3380693137031785|0.0001284221296633|13.35|312.0|10|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.2911987304688	2	529.26995	1056.52535	-1.0305	-0.00054539	-1.3155	-0.00069628	-2.346	-0.0012417	529.2692097339622	37	0.13785	37	36.885	37.023	0					4	2	2	0	0	0	0.028476	1	1984	1984		30.504	0	1	9664	+		52157	28673	43178	43210	56554	56554					-0.000654550570061474
RWGGPVIL	8	Unmodified	_RWGGPVIL_					0	0	0			REV__ENST00000424288.1_1_X:40691148-40691409:-|nuORF	REV__ENST00000424288.1_1_X:40691148-40691409:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	449.2685546875	2	449.268887	896.523222	1.103	0.00049553	-1.2615	-0.00056675	-0.15852	-7.1219E-05	449.26826553228875	113.95	2.2702	112.5	112.2	114.47	-1.4461					120	44	4	0	0	0	0.68312	1	10635	10635		46.766	11.566	1	1786500	+		52158	25642	43179	43211	56555	56555					0.07082116205185685
RWGGRARVL	9	Unmodified	_RWGGRARVL_					0	0	0			REV__ENST00000574054.1_1_17:7348446-7348839:+|nuORF	REV__ENST00000574054.1_1_17:7348446-7348839:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.8223266601562	2	535.820141	1069.62573	-1.04	-0.00055725	-1.1521	-0.00061733	-2.1921	-0.0011746	535.8194085007677	58.425	1.7438	55.033	54.701	56.445	-3.392					92	34	5	0	0	0	0.19716	1	3880	3880		76.847	8.0598	1	1693300	+		52159	27760	43180	43212	56556	56556					0.09370201996648575
RWGIQKGNRKK	11	Unmodified	_RWGIQKGNRKK_					0	0	0		AKAP13-SPI1|1|fusion;ENST00000533030.1_1_11:47376780-47400013:-|nuORF;ENSG00000066336|ENST00000378538|SPI1;nc|ENSG00000066336|P17947-2|SPI1	AKAP13-SPI1|1|fusion;ENSG00000066336|ENST00000378538|SPI1	AKAP13-SPI1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	457.60723876953125	3	457.609105	1369.80549	-3.2547	-0.0014894	0.58555	0.00026795	-2.6692	-0.0012214	457.60942916936364	154.63	1.9214	154.4	153.61	155.53	-0.22696					87	47	3	0	0	0	0.72472	1	15752	15752		19.263	0.73163	1	20922			52160	56;1350	43181	43213	56557	56557					0.1353746121376389
RWHGPLLRRRR	11	Unmodified	_RWHGPLLRRRR_					0	0	0			REV__ENST00000433005.1_1_7:17338824-17338914:-|nuORF	REV__ENST00000433005.1_1_7:17338824-17338914:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	501.63470458984375	3	501.63951	1501.8967	-7.1499	-0.0035867	-1.8188	-0.00091237	-8.9687	-0.0044991	501.9729975414474	163.96	0.2713	162.56	162.34	162.61	-1.3925					9	5	2	0	0	0	0.72545	1	14303	14303		9.6461	0	1	159020	+		52161	25740	43182	43214	56558	56558					0.16582769701744837
RWIHSRILP	9	Unmodified	_RWIHSRILP_					0	0	0		L1PA8A_dup160|chr1:247133953-247136664:+|1.5135014545884105|0.4971293307696565|1.61|429.0|46|2|sense;L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|187|3|sense;L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|156|3|sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.448906025747238|0.1317034148076854|3.46|417.0|111|2|sense;L1PA2_dup23|chr1:43114528-43120516:-|1.3533449411662286|0.3152228216366226|2.1|404.0|140|3|sense;L1PA2_dup1619|chr5:71851116-71854174:+|2.376726425342643|0.0208621851436049|6.83|429.0|52|2|sense;L1PA3_dup1152|chr2:117623254-117629278:+|1.1606400945596698|0.0841542146032081|3.79|394.0|87|2|sense	L1PA8A_dup160|chr1:247133953-247136664:+|1.5135014545884105|0.4971293307696565|1.61|429.0|46|2|sense	L1PA8A_dup160|chr1:247133953-247136664:+|1.5135014545884105|0.4971293307696565|1.61|429.0|46|2|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3504638671875	2	589.351274	1176.688	-1.1546	-0.00068047	-0.66526	-0.00039207	-1.8199	-0.0010725	589.3507829555228	88.833	1.6912	86.23	85.832	87.523	-2.6027					106	33	5	0	0	0	0.18193	1	7614	7614		79.451	7.5735	1	1268100			52162	14671	43183	43215	56559	56559					0.10671928344982007
RWIKLDLKTEL	11	Unmodified	_RWIKLDLKTEL_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	MULTI-MSMS	OvCa9_classI_Rep3	3	472.61749267578125	3	472.285405	1413.83439	-5.4674	-0.0025822	1.977	0.0009337	-3.4905	-0.0016485	472.286486090062	156.6	1.7536	155.43	154.84	156.59	-1.1707					66	39	2	0	0	0	0.72488	1	13483	13483		17.167	2.4731	1	58221			52163	4566	43184	43216	56560	56560					0.14402140999550284
RWIRYPLLLVF	11	Unmodified	_RWIRYPLLLVF_					0	0	0			REV__ENSG00000178401|ENST00000549441|DNAJC22	REV__ENSG00000178401|ENST00000549441|DNAJC22	MULTI-MSMS	OvCa9_classI_Rep2	2	492.6341247558594	3	492.634368	1474.88128	-4.4124	-0.0021737	4.4162	0.0021756	0.0038735	1.9082E-06	492.6364518280441	160.52	2.4825	160.29	159.35	161.83	-0.22697					136	50	4	0	0	0	0.72573	1	16433	16433		6.001	0.58812	1	91160	+		52164	15879	43185	43217	56561	56561					0.1628304534133349
RWLKLARQP	9	Unmodified	_RWLKLARQP_					0	0	0			REV__ENST00000419364.1_1_2:45167791-45167950:-|nuORF	REV__ENST00000419364.1_1_2:45167791-45167950:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3560791015625	2	584.359099	1166.70365	-0.50329	-0.0002941	-3.7984	-0.0022196	-4.3017	-0.0025137	584.3567763295431	142.42	4.015	140.98	138.81	142.83	-1.4427					242	77	4	0	0	0	0.70177	1	14093	14093		17.365	0.89182	1	214670	+		52165	25582	43186	43218	56562	56562					0.1269621486203505
RWLMGMVE	8	Unmodified	_RWLMGMVE_					0	0	0			REV__nc|ENSG00000049283|Q9H201-2|EPN3	REV__nc|ENSG00000049283|Q9H201-2|EPN3	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.76678466796875	2	511.251523	1020.48849	-0.16077	-8.2192E-05	-1.4126	-0.00072221	-1.5734	-0.0008044	511.2507216632859	31.892	0.24755	29.182	29.085	29.332	-2.7097					7	4	2	0	0	0	0.028476	1	996	996		19.36	1.0356	1	10835	+		52166	16676	43187	43219	56563	56563					-0.020932109894374662
RWLPVLRHYDL	11	Unmodified	_RWLPVLRHYDL_					0	0	0		nc|ENSG00000138744|Q02083-3|NAAA;nc|ENSG00000138744|Q02083-2|NAAA;ENSG00000138744|ENST00000286733|NAAA;ENST00000503636.1_1_4:76861152-76862102:-|nuORF	nc|ENSG00000138744|Q02083-3|NAAA	nc|ENSG00000138744|Q02083-3|NAAA	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.94793701171875	3	489.945494	1466.81465	1.1638	0.00057021	3.2871	0.0016105	4.4509	0.0021807	489.9470372776395	37.004	1.6445	34.111	33.496	35.14	-2.8925					108	32	4	0	0	0	0.71048	1	1340	1340		26.063	1.8316	1	179890			52167	4720	43188	43220	56564	56564					0.09991809779489813
RWLRPGGAK	9	Unmodified	_RWLRPGGAK_					0	0	0			REV__ENST00000372257.6_1_1:44804753-44804978:-|nuORF	REV__ENST00000372257.6_1_1:44804753-44804978:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.79541015625	2	520.809242	1039.60393	-0.35772	-0.0001863	-1.8881	-0.00098336	-2.2458	-0.0011697	520.8081296551782	78.819	1.4152	76.067	75.571	76.986	-2.7514					66	29	3	0	0	0	0.027462	1	6311	6311		29.15	4.9468	1	401430	+		52168	24999	43189	43221	56565	56565					0.08571397248078938
RWLRVLIW	8	Unmodified	_RWLRVLIW_					0	0	0			REV__ENST00000486102.5_1_3:49742606-49753136:+|nuORF	REV__ENST00000486102.5_1_3:49742606-49753136:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.8131103515625	2	571.353286	1140.69202	-0.8609	-0.00049188	-3.005	-0.0017169	-3.8659	-0.0022088	571.351364838399	26.221	0.40003	26.221	26.092	26.492	0					15	7	3	0	0	0	0.028476	1	655	655		14.664	0	1	107360	+		52169	20933	43190	43222	56566	56566					0.12730017838680396
RWLVHLRV	8	Unmodified	_RWLVHLRV_					0	0	0		nc|ENSG00000095383|Q9BYX2-3|TBC1D2;nc|ENSG00000095383|Q9BYX2-2|TBC1D2;ENSG00000095383|ENST00000465784|TBC1D2;nc|ENSG00000095383|Q9BYX2-4|TBC1D2;nc|ENSG00000095383|Q9BYX2-6|TBC1D2;nc|ENSG00000095383|Q9BYX2-5|TBC1D2	nc|ENSG00000095383|Q9BYX2-3|TBC1D2	nc|ENSG00000095383|Q9BYX2-3|TBC1D2	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.8622436523438	2	539.83526	1077.65597	0.073066	3.9444E-05	-1.1733	-0.00063336	-1.1002	-0.00059392	539.834247446388	134.6	0.69171	133.48	133.21	133.9	-1.1226					23	13	2	0	0	0	0.028476	1	10850	10850		52.299	7.7681	1	38988			52170	1927	43191	43223	56567	56567					0.12024560661848227
RWLVRPKEK	9	Unmodified	_RWLVRPKEK_					0	0	0		ENSG00000121039|ENST00000240285|RDH10	ENSG00000121039|ENST00000240285|RDH10	ENSG00000121039|ENST00000240285|RDH10	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3688354492188	2	606.372207	1210.72986	-2.264	-0.0013728	-2.13	-0.0012916	-4.394	-0.0026644	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.65371	1	12411	12411		25.574	6.2141	1	205770			52171	3466	43192	43224	56568	56568					0.13292484033490837
RWPKKSAEF	9	Unmodified	_RWPKKSAEF_					0	0	0		nc|ENSG00000265681|P18621-2|RPL17;ENST00000414070.1_1_1:109535017-109535455:+|nuORF;ENSG00000265681|ENST00000580261|RPL17;nc|ENSG00000265681|P18621-3|RPL17;ENST00000582935.1_1_18:47016781-47017264:-|nuORF	nc|ENSG00000265681|P18621-2|RPL17	nc|ENSG00000265681|P18621-2|RPL17	MULTI-MSMS	OvCa99_classI_Rep5	1	574.8148803710938	2	574.81419	1147.61383	-0.45312	-0.00026046	0.13161	7.5653E-05	-0.32151	-0.00018481	574.8142353849663	43.039	1.9011	43.039	42.583	44.484	0					136	43	5	0	0	0	0.13504	3	2806	2786;2806;2831		87.696	31.263	1	6260600			52172	9523	43193	43225	56569;56570;56571	56570					0.04592540462795114
RWPWAISLV	9	Unmodified	_RWPWAISLV_					0	0	0			REV__ENST00000237536.8_2_20:35414273-35414927:-|nuORF	REV__ENST00000237536.8_2_20:35414273-35414927:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.3259887695312	2	564.321651	1126.62875	0.97655	0.00055109	3.754	0.0021185	4.7306	0.0026696	564.3237500544434	102.85	2.5142	100.65	100.25	102.77	-2.1994					128	47	4	0	0	0	0.24951	1	9354	9354		68.787	1.8249	1	5226800	+		52173	23810	43194	43226	56572	56572					0.0705003233078969
RWQLLHTR	8	Unmodified	_RWQLLHTR_					0	0	0			REV__ENST00000469167.1_1_13:24463081-24463459:-|nuORF	REV__ENST00000469167.1_1_13:24463081-24463459:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.8572998046875	2	555.319974	1108.6254	4.0406	0.0022438	-2.1738	-0.0012072	1.8668	0.0010367	555.318784505218	133.04	0.83546	131.53	131.17	132.01	-1.5182					27	16	2	0	0	0	0.028476	1	12878	12878		34.173	6.2903	1	28384	+		52174	26238	43195	43227	56573	56573					0.07542782276777871
RWQLLHTR	8	Unmodified	_RWQLLHTR_					0	0	0			REV__ENST00000469167.1_1_13:24463081-24463459:-|nuORF	REV__ENST00000469167.1_1_13:24463081-24463459:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	555.319974	1108.6254	1.2237	0.00067956	0.75488	0.0004192	1.9786	0.0010988	555.3203863561511	131.65	0.92766	131.42	131.2	132.13	-0.22696	-0.051951	0.0015614	NaN	34.173	34	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32821	+		52175	26238	43195	43227							0.07542782276777871
RWQQSPRWCKS	11	Unmodified	_RWQQSPRWCKS_					0	0	0			REV__chr1:156701013-156705377|156|42.62|0.33|7.01|-|0|None,CRABP2|1	REV__chr1:156701013-156705377|156|42.62|0.33|7.01|-|0|None,CRABP2|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	488.77215576171875	3	487.910455	1460.70954	0.093743	4.5738E-05	-4.2104	-0.0020543	-4.1166	-0.0020085	488.2437967730235	56.36	0.45378	53.066	52.92	53.374	-3.2944					12	8	2	0	0	0	0.026068	1	3598	3598		34.087	8.1948	1	22874	+		52176	15808	43196	43228	56574	56574					-0.0023905468860903056
RWQRWRRSYVM	11	Unmodified	_RWQRWRRSYVM_					0	0	0		ENST00000216456.6_1_14:68126581-68129225:-|nuORF	ENST00000216456.6_1_14:68126581-68129225:-|nuORF	ENST00000216456.6_1_14:68126581-68129225:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.7994384765625	3	541.952766	1622.83647	2.4476	0.0013265	0.27186	0.00014733	2.7195	0.0014738	541.9529480476402	80.542	0.43155	80.542	80.354	80.786	0					21	9	3	0	0	0	0.026559	1	8292	8292		1.523	0.10423	1	747960			52177	9676	43197	43229	56575	56575					0.049962912563614736
RWQTTWKRRQL	11	Unmodified	_RWQTTWKRRQL_					0	0	0			REV__ENST00000541387.5_1_20:34260695-34260758:-|nuORF	REV__ENST00000541387.5_1_20:34260695-34260758:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.8223876953125	3	520.295297	1557.86406	1.0171	0.00052917	-1.7312	-0.00090071	-0.71409	-0.00037154	520.2939075181786	133.25	0.31514	133.25	133.08	133.4	0					9	6	2	0	0	0	0.026497	1	15494	15494		9.6461	3.3253	1	135970	+		52178	27369	43198	43230	56576	56576					0.10744517788248231
RWRAGDLEA	9	Unmodified	_RWRAGDLEA_					0	0	0		ENSG00000135835|ENST00000367588|KIAA1614	ENSG00000135835|ENST00000367588|KIAA1614	ENSG00000135835|ENST00000367588|KIAA1614	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.2655029296875	2	537.277972	1072.54139	-2.7234	-0.0014632	0.40769	0.00021904	-2.3157	-0.0012442	537.2780553962048	107.6	0.8284	105.72	105.49	106.31	-1.8785					28	16	3	0	0	0	0.027462	1	9809	9809		40.778	5.6261	1	96972			52179	4420	43199	43231	56577	56577					0.008022063892212827
RWRAGDLEA	9	Unmodified	_RWRAGDLEA_					0	0	0		ENSG00000135835|ENST00000367588|KIAA1614	ENSG00000135835|ENST00000367588|KIAA1614	ENSG00000135835|ENST00000367588|KIAA1614	MULTI-MATCH	OvCa9_classI_Rep3	3		2	537.277972	1072.54139	1.5273	0.00082061	-4.4458	-0.0023886	-2.9184	-0.001568	537.2754786745339	107.05	0.78024	105.79	105.53	106.31	-1.267	0.031242	-0.00329	NaN	40.778	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114260			52180	4420	43199	43231							0.008022063892212827
RWRHFLLWRRK	11	Unmodified	_RWRHFLLWRRK_					0	0	0			REV__ENST00000603928.2_2_9:136890984-136891107:+|nuORF	REV__ENST00000603928.2_2_9:136890984-136891107:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.24102783203125	4	414.248289	1652.96405	-1.8937	-0.00078446	4.3565	0.0018047	2.4628	0.0010202	414.50091604044104	49.547	0.77791	46.405	45.937	46.715	-3.1416					23	14	2	0	0	0	0.026549	1	2783	2783		3.6191	3.2786	1	17867	+		52181	28054	43200	43232	56578	56578					0.16368799912697796
RWRKLFWRLKM	11	Unmodified	_RWRKLFWRLKM_					0	0	0			REV__nc|ENSG00000149639|O94964-4|MTCL2	REV__nc|ENSG00000149639|O94964-4|MTCL2	MULTI-SECPEP	OvCa9_classI_Rep2	2	540.806884765625	3	540.653769	1618.93948	-1.6375	-0.00088533	2.2115	0.0011957	0.574	0.00031033	540.988974560164	102.57	0.44386	101.88	101.79	102.23	-0.68459					9	8	2	0	0	0	0.026562	1	9481	9481		0.37141	0	1	7484.2	+		52182	20174	43201	43233	56579	56579					0.15476403714978915
RWRRGRTRWPP	11	Unmodified	_RWRRGRTRWPP_					0	0	0			REV__ENST00000459642.1_1_7:44184737-44185442:-|nuORF	REV__ENST00000459642.1_1_7:44184737-44185442:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.3288879394531	3	508.623748	1522.84942	-0.33327	-0.00016951	-1.651	-0.00083976	-1.9843	-0.0010093	508.6229112630502	50.952	0.26309	50.952	50.73	50.993	0					8	5	2	0	0	0	0.026302	1	3894	3894		17.167	8.3674	1	65469	+		52183	26063	43202	43234	56580	56580					0.1089049043077921
RWRRRWFVLK	10	Unmodified	_RWRRRWFVLK_					0	0	0		ENSG00000142675|ENST00000361530|CNKSR1;nc|ENSG00000142675|Q969H4|CNKSR1	ENSG00000142675|ENST00000361530|CNKSR1	ENSG00000142675|ENST00000361530|CNKSR1	MULTI-MSMS	OvCa9_classI_Rep3	3	501.6347351074219	3	501.637106	1501.88949	-7.15	-0.0035867	2.9726	0.0014912	-4.1773	-0.0020955	501.9729975414474	163.96	0.2713	162.56	162.34	162.61	-1.3925					9	5	2	0	0	0	0.86636	1	14288	14288		10.587	4.888	1	159020			52184	4990	43203	43235	56581	56581					0.15862037101328497
RWRRWWWRRRR	11	Unmodified	_RWRRWWWRRRR_					0	0	0		ENST00000475204.5_1_1:70687068-70687435:+|nuORF;ENST00000370951.5_1_1:70671397-70687435:+|nuORF;ENST00000463877.1_1_1:70671397-70687435:+|nuORF;ENST00000395136.6_2_1:70687096-70687432:+|nuORF	ENST00000475204.5_1_1:70687068-70687435:+|nuORF	ENST00000475204.5_1_1:70687068-70687435:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	619.3499145507812	3	619.352474	1855.03559	1.2248	0.00075861	-0.84815	-0.00052531	0.37669	0.00023331	619.3523978577335	147.44	0.72966	147.44	147.01	147.74	0					33	14	3	0	0	0	0.72573	1	17251	17251		6.001	5.6296	1	258160			52185	10941	43204	43236	56582	56582					0.14227732389917946
RWRWLRNWTHF	11	Unmodified	_RWRWLRNWTHF_					0	0	0			REV__ENST00000382162.7_1_22:31904270-32000328:+|nuORF	REV__ENST00000382162.7_1_22:31904270-32000328:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.7770385742188	3	553.291887	1656.85383	1.4299	0.00079116	-0.75854	-0.00041969	0.67139	0.00037147	553.6244897199012	109.08	1.1451	109.08	108.76	109.9	0					29	25	2	0	0	0	0.026461	1	12432	12432		5.4129	2.2016	1	142970	+		52186	22986	43205	43237	56583	56583					0.05167954853664014
RWRWRKRWRLT	11	Unmodified	_RWRWRKRWRLT_					0	0	0			REV__ENST00000507209.5_1_4:187125362-187125452:+|nuORF	REV__ENST00000507209.5_1_4:187125362-187125452:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.35009765625	3	567.334198	1698.98076	-1.3216	-0.0007498	-3.1717	-0.0017994	-4.4933	-0.0025492	567.3320623244558	92.232	0.37419	90.208	89.941	90.315	-2.0241					11	7	2	0	0	0	0.026562	1	5797	5797		0.37141	0.37141	1	79480	+		52187	26896	43206	43238	56584	56584					0.15923300798658602
RWRWRWSRMLR	11	Unmodified	_RWRWRWSRMLR_					0	0	0			REV__ENST00000414613.1_1_2:61164392-61164575:-|nuORF	REV__ENST00000414613.1_1_2:61164392-61164575:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.7669067382812	3	563.644155	1687.91064	-0.0045547	-2.5673E-06	3.0256	0.0017054	3.0211	0.0017028	563.9798668954855	41.428	0.39893	41.428	41.195	41.594	0					16	8	3	0	0	0	0.026538	1	2585	2585		3.026	1.503	1	117900	+		52188	25519	43207	43239	56585	56585					0.09419679138545689
RWSLPLVPAR	10	Unmodified	_RWSLPLVPAR_					0	0	0			REV__ENST00000556518.5_2_14:65878593-65896974:+|nuORF	REV__ENST00000556518.5_2_14:65878593-65896974:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8565673828125	2	597.858932	1193.70331	-3.1766	-0.0018991	-1.0809	-0.0006462	-4.2574	-0.0025453	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.75313	1	15220	15220		24.519	0	1	436470	+		52189	27562	43208	43240	56586	56586					0.11420795142180395
RWSPVRPLVF	10	Unmodified	_RWSPVRPLVF_					0	0	0		ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	ENSG00000119333|ENST00000372715|DYNC2I2	MULTI-MSMS	OvCa99_classI_Rep5	1	628.8682250976562	2	628.866757	1255.71896	-2.1168	-0.0013312	-0.19986	-0.00012568	-2.3167	-0.0014569	628.8665688452137	103.89	1.1858	103.89	103.51	104.7	0					85	27	5	0	0	0	0.46863	2	11638	11610;11638		46.457	25.51	1	6410400			52190	3355	43209	43241	56587;56588	56588					0.10133081659205345
RWVNGLGVF	9	Unmodified	_RWVNGLGVF_					0	0	0			REV__ENSG00000131389|ENST00000622186|SLC6A6	REV__ENSG00000131389|ENST00000622186|SLC6A6	MULTI-MSMS	OvCa99_classI_Rep5	1	524.2930297851562	2	524.290351	1046.56615	-1.062	-0.0005568	-4.2949	-0.0022518	-5.3569	-0.0028086	524.2882742456546	39.779	3.3775	39.779	39.505	42.883	0					203	76	6	0	0	0	0.58665	1	2502	2502		33.516	1.5607	1	97899000	+		52191	19011	43210	43242	56589	56589					0.04472886262601605
RWWFRRLFLIF	11	Unmodified	_RWWFRRLFLIF_					0	0	0		ENST00000281830.3_1_2:223918801-223918864:+|nuORF	ENST00000281830.3_1_2:223918801-223918864:+|nuORF	ENST00000281830.3_1_2:223918801-223918864:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	547.6503295898438	3	547.317262	1638.92996	-0.091769	-5.0227E-05	-3.1774	-0.001739	-3.2692	-0.0017893	547.3155019587158	21.641	0.35012	21.641	21.477	21.827	0					20	12	2	0	0	0	0.72582	1	132	132		0.37141	0	1	40465			52192	10050	43211	43243	56590	56590					0.13604958701102987
RWWFSWRRRDF	11	Unmodified	_RWWFSWRRRDF_					0	0	0		ENSG00000132793|ENST00000373257|LPIN3;nc|ENSG00000132793|Q9BQK8-2|LPIN3	ENSG00000132793|ENST00000373257|LPIN3	ENSG00000132793|ENST00000373257|LPIN3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.3212280273438	3	566.623525	1696.84875	0.49936	0.00028295	-3.0482	-0.0017272	-2.5488	-0.0014442	566.6217786054397	94.289	0.73953	91.82	91.571	92.31	-2.4685					17	14	2	0	0	0	0.026559	1	8224	8224		1.523	1.523	1	27474			52193	4174	43212	43244	56591	56591					0.02819650991045819
RWWFSWRRRDF	11	Unmodified	_RWWFSWRRRDF_					0	0	0		ENSG00000132793|ENST00000373257|LPIN3;nc|ENSG00000132793|Q9BQK8-2|LPIN3	ENSG00000132793|ENST00000373257|LPIN3	ENSG00000132793|ENST00000373257|LPIN3	MULTI-MATCH	OvCa9_classI_Rep3	3		3	566.623525	1696.84875	-1.2041	-0.00068226	-0.42066	-0.00023835	-1.6247	-0.00092061	566.6231573052214	93.768	0.76537	91.806	91.526	92.292	-1.9617	-0.0068331	0.0022831	NaN	1.523	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43713			52194	4174	43212	43244							0.02819650991045819
RWWNKRLHLSF	11	Unmodified	_RWWNKRLHLSF_					0	0	0		L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|1|1|sense	L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|1|1|sense	L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|1|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.3114013671875	3	514.952872	1541.83679	0.69469	0.00035773	3.6562	0.0018828	4.3509	0.0022405	514.9532269382697	35.59	0.34935	32.741	32.59	32.94	-2.849					9	6	2	0	0	0	0.026324	1	1165	1165		21.78	9.3476	1	7664.2			52195	14556	43213	43245	56592	56592					0.08754034247863274
RWWWRRRRRHR	11	Unmodified	_RWWWRRRRRHR_					0	0	0		ENST00000475204.5_1_1:70687068-70687435:+|nuORF;ENST00000370951.5_1_1:70671397-70687435:+|nuORF;ENST00000463877.1_1_1:70671397-70687435:+|nuORF;ENST00000395136.6_2_1:70687096-70687432:+|nuORF	ENST00000475204.5_1_1:70687068-70687435:+|nuORF	ENST00000475204.5_1_1:70687068-70687435:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.28546142578125	4	452.511075	1806.01519	0.91278	0.00041304	-4.3263	-0.0019577	-3.4135	-0.0015447	452.5090112382184	48.021	0.40534	44.913	44.684	45.09	-3.1077					13	7	2	0	0	0	0.026553	1	2630	2630		1.3219	0	1	19826			52196	10941	43214	43246	56593	56593					0.14442561730106718
RWWWRRRRRHR	11	Unmodified	_RWWWRRRRRHR_					0	0	0		ENST00000475204.5_1_1:70687068-70687435:+|nuORF;ENST00000370951.5_1_1:70671397-70687435:+|nuORF;ENST00000463877.1_1_1:70671397-70687435:+|nuORF;ENST00000395136.6_2_1:70687096-70687432:+|nuORF	ENST00000475204.5_1_1:70687068-70687435:+|nuORF	ENST00000475204.5_1_1:70687068-70687435:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	603.3469848632812	3	603.012341	1806.01519	1.4769	0.00089058	0.69065	0.00041647	2.1675	0.001307	603.012838296433	34.95	1.8528	32.117	31.653	33.505	-2.8329					127	36	6	0	0	0	0.026562	1	1077	1077		0	0	1	448550			52197	10941	43214	43246	56594	56594					0.14442561730106718
RYALQMEQL	9	Unmodified	_RYALQMEQL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000411618.1_1_9:30799684-30799825:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa99_classI_Rep5	1	576.298583984375	2	576.297516	1150.58048	1.5183	0.00087499	0.91774	0.00052889	2.436	0.0014039	576.297932050169	92.495	1.0886	92.495	92.174	93.263	0					68	25	4	0	0	0	0.0085876	2	9986	9986;10012		176.44	63.033	1	10649000			52198	2808	43215	43247	56595;56596	56595					0.011211706285848777
RYASINTHL	9	Unmodified	_RYASINTHL_					0	0	0		ENST00000578904.1_1_17:80208040-80213403:-|nuORF;ENST00000584377.5_1_17:80203885-80211156:-|nuORF;nc|ENSG00000141551|P48730-2|CSNK1D;ENSG00000141551|ENST00000314028|CSNK1D;ENSG00000213923|ENST00000396832|CSNK1E;WDR45L-CSNK1D|1|fusion;WDR45L-CSNK1D|2|fusion;ENST00000581241.5_1_17:80206597-80211051:-|nuORF	ENST00000578904.1_1_17:80208040-80213403:-|nuORF	ENST00000578904.1_1_17:80208040-80213403:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	537.7890625	2	537.788173	1073.56179	0.20405	0.00010974	-1.0493	-0.00056429	-0.84522	-0.00045455	537.7874794984525	57.588	1.1792	57.588	57.309	58.488	0					85	27	5	0	0	0	0.1804	2	4829	4829;4858		79.713	17.605	1	35488000			52199	4925	43216	43248	56597;56598	56597					0.027953770490512397
RYAVEILTW	9	Unmodified	_RYAVEILTW_					0	0	0		ENSG00000024048|ENST00000372901|UBR2;nc|ENSG00000024048|Q8IWV8|UBR2;nc|ENSG00000024048|Q8IWV8-2|UBR2	ENSG00000024048|ENST00000372901|UBR2	ENSG00000024048|ENST00000372901|UBR2	MULTI-MSMS	OvCa99_classI_Rep5	1	575.8167114257812	2	575.816399	1149.61824	1.4358	0.00082678	-0.053693	-3.0917E-05	1.3821	0.00079586	575.8163644826128	122.75	0.78494	122.75	122.45	123.23	0					33	16	3	0	0	0	0.37135	1	14141	14141		54.776	1.4249	1	197150			52200	1043	43217	43249	56599	56599					0.04942004885697315
RYCTELMLR	9	Unmodified	_RYCTELMLR_					0	0	0			REV__ENSG00000183354|ENST00000399933|KIAA2026	REV__ENSG00000183354|ENST00000399933|KIAA2026	MULTI-MSMS	OvCa99_classI_Rep5	1	592.8010864257812	2	592.799368	1183.58418	0.16122	9.5571E-05	2.9273	0.0017353	3.0885	0.0018309	592.8010049025239	32.709	0.48659	32.709	32.503	32.989	0					25	9	4	0	0	0	0.1804	1	1451	1451		79.713	0.26157	1	590970	+		52201	22359	43218	43250	56600	56600					-0.00026482869225219474
RYCTELMLR	9	Unmodified	_RYCTELMLR_					0	0	0			REV__ENSG00000183354|ENST00000399933|KIAA2026	REV__ENSG00000183354|ENST00000399933|KIAA2026	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	592.799368	1183.58418	0.16122	9.5571E-05	2.9273	0.0017353	3.0885	0.0018309	592.8010049025239	32.709	0.48659	32.709	32.503	32.989	0	0	0	NaN	79.713	25	9	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	590970	+		52202	22359	43218	43250							-0.00026482869225219474
RYDPFSNTW	9	Unmodified	_RYDPFSNTW_					0	0	0		ENST00000460787.1_1_11:75133626-75136632:-|nuORF;ENSG00000149243|ENST00000539798|KLHL35	ENST00000460787.1_1_11:75133626-75136632:-|nuORF	ENST00000460787.1_1_11:75133626-75136632:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	593.271728515625	2	593.269813	1184.52507	2.698	0.0016006	-0.4396	-0.0002608	2.2584	0.0013398	593.2694901409542	102.3	0.89548	102.3	102	102.89	0					56	20	4	0	0	0	0.075543	1	11399	11399		104.06	27.283	1	3778600			52203	5446	43219	43251	56601	56601					-0.0598091956751432
RYFDPANGKF	10	Unmodified	_RYFDPANGKF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF;chr19:3982052-3982409|96|145.54|0.52|8.13|-|1|EEF2,None|1	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OvCa99_classI_Rep5	1	405.5374755859375	3	405.536612	1213.58801	0.96824	0.00039266	-0.59171	-0.00023996	0.37653	0.0001527	405.5363524266216	73.195	0.95292	73.195	72.915	73.868	0					77	23	5	0	0	0	0.029677	2	7181	7154;7181		136.52	77.885	1	10070000			52204	6826	43220	43252	56602;56603	56603					-0.010243537794849544
RYFDPANGKF	10	Unmodified	_RYFDPANGKF_					0	0	0		ENSG00000167658|ENST00000309311|EEF2;ENST00000598182.5_1_19:3980752-3982305:-|nuORF;chr19:3982052-3982409|96|145.54|0.52|8.13|-|1|EEF2,None|1	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OvCa99_classI_Rep5	1	607.8025512695312	2	607.80128	1213.58801	-0.049743	-3.0234E-05	-0.20989	-0.00012757	-0.25964	-0.00015781	607.8011688367612	73.176	2.7238	73.176	72.877	75.601	0					204	68	6	0	0	0	0.19294	1	7205	7205		114.89	27.198	1	98437000			52205	6826	43220	43252	56604	56604					-0.010243537794849544
RYFIAPAKF	9	Unmodified	_RYFIAPAKF_					0	0	0		ENSG00000135862|ENST00000258341|LAMC1;LAMC1|p.T1207Nfs*4|1|0.14|ENSG00000135862|chr1:183132451-183132452|-/A|frameshift_variant	ENSG00000135862|ENST00000258341|LAMC1	ENSG00000135862|ENST00000258341|LAMC1	MULTI-MSMS	OvCa99_classI_Rep5	1	556.8123779296875	2	556.816202	1111.61785	2.2935	0.0012771	0.33324	0.00018555	2.6268	0.0014626	556.8162566808654	83.899	1.8131	83.899	82.736	84.55	0					81	42	4	0	0	0	0.40667	1	8743	8743		51.335	8.9393	1	2482700			52206	4424	43221	43253	56605	56605					0.06650629956516241
RYFKGPELL	9	Unmodified	_RYFKGPELL_					0	0	0		nc|ENSG00000101266|P68400-2|CSNK2A1;ENSG00000070770|ENST00000262506|CSNK2A2;ENSG00000254598|ENST00000528848|CSNK2A3;ENSG00000101266|ENST00000217244|CSNK2A1	nc|ENSG00000101266|P68400-2|CSNK2A1	nc|ENSG00000101266|P68400-2|CSNK2A1	MULTI-MSMS	OvCa99_classI_Rep5	1	561.8233032226562	2	561.818941	1121.62333	2.2532	0.0012659	-0.4526	-0.00025428	1.8006	0.0010116	561.8186206139575	81.8	2.2159	81.8	81.288	83.504	0					132	52	5	0	0	0	0.074342	3	8483	8423;8452;8483		104.75	21.996	1	42520000			52207	1436	43222	43254	56606;56607;56608	56608					0.06738308748322197
RYFKTPRKF	9	Unmodified	_RYFKTPRKF_					0	0	0		nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENSG00000148337|ENST00000372938|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	MULTI-MSMS	OvCa99_classI_Rep5	1	414.9088439941406	3	414.90838	1241.70331	0.1872	7.7669E-05	-1.0581	-0.000439	-0.87088	-0.00036133	414.90826930033427	42.393	5.2268	42.393	42.024	47.251	0					261	119	6	0	0	0	0.19758	6	2722	2698;2722;2753;2800;2826;2880		93.143	43.927	1	57855000			52208	5400	43223	43255	56609;56610;56611;56612;56613;56614	56610					0.09212795142161667
RYFKTPRKF	9	Unmodified	_RYFKTPRKF_					0	0	0		nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENSG00000148337|ENST00000372938|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	MULTI-MSMS	OvCa99_classI_Rep5	1	621.8588256835938	2	621.858932	1241.70331	-0.84677	-0.00052657	0.68231	0.0004243	-0.16446	-0.00010227	621.8593176499138	42.394	1.8842	42.394	42.111	43.995	0					117	43	4	0	0	0	0.13504	2	2707	2707;2765		87.696	43.319	1	5479100			52209	5400	43223	43255	56615;56616	56615					0.09212795142161667
RYFVRRLI	8	Unmodified	_RYFVRRLI_					0	0	0			REV__nc|ENSG00000130529|Q8TD43-2|TRPM4	REV__nc|ENSG00000130529|Q8TD43-2|TRPM4	MULTI-MSMS	OvCa9_classI_Rep3	3	561.8451538085938	2	561.848368	1121.68218	-5.3491	-0.0030054	0.54054	0.0003037	-4.8086	-0.0027017	561.8485776281088	152.58	1.5019	151.61	151.19	152.7	-0.97299					81	30	4	0	0	0	0.75915	1	13065	13065		20.482	0.48506	1	218830	+		52210	18952	43224	43256	56617	56617					0.12620829833326752
RYGDGGSTF	9	Unmodified	_RYGDGGSTF_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000515481.5_1_5:179044503-179045371:-|nuORF;ENST00000502904.5_1_5:179043989-179045371:-|nuORF	ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	MULTI-MSMS	OvCa99_classI_Rep5	1	480.21636962890625	2	480.214506	958.414459	-0.29076	-0.00013963	0.64763	0.000311	0.35687	0.00017138	480.21472089125865	51.634	1.0146	51.634	51.332	52.347	0					47	23	4	0	0	0	0.2422	1	3989	3989		69.628	3.8245	1	2854700			52211	6970	43225	43257	56618	56618					-0.06641139555756581
RYGDLVDYL	9	Unmodified	_RYGDLVDYL_					0	0	0		ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF	ENSG00000113721|ENST00000261799|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-MSMS	OvCa99_classI_Rep5	1	557.2835083007812	2	557.282389	1112.55022	3.1376	0.0017485	-1.1303	-0.00062992	2.0072	0.0011186	557.2817970970773	115.93	1.23	115.93	115.63	116.86	0					83	26	6	0	0	0	0.1944	1	13268	13268		77.318	13.11	1	4371600			52212	2990	43226	43258	56619	56619					-0.001548647649542545
RYGLLTNEI	9	Unmodified	_RYGLLTNEI_					0	0	0		ENSG00000108771|ENST00000251642|DHX58;ENST00000586522.5_1_17:40255624-40263910:-|nuORF	ENSG00000108771|ENST00000251642|DHX58	ENSG00000108771|ENST00000251642|DHX58	MULTI-MSMS	OvCa99_classI_Rep5	1	539.8004150390625	2	539.798206	1077.58186	2.3879	0.001289	0.15366	8.2947E-05	2.5416	0.0013719	539.7982215612486	94.927	0.72067	94.927	94.69	95.41	0					31	16	2	0	0	0	0.10421	1	10344	10344		96.034	0.21844	1	1225000			52213	2672	43227	43259	56620	56620					0.046171279889904326
RYGLVTNEI	9	Unmodified	_RYGLVTNEI_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-MSMS	OvCa99_classI_Rep5	1	532.791748046875	2	532.790381	1063.56621	1.7636	0.00093962	0.16901	9.0048E-05	1.9326	0.0010297	532.7904232540517	83.773	1.5875	83.773	83.335	84.923	0					99	37	5	0	0	0	0.033166	2	8734	8734;8798		132.76	31.157	1	16299000			52214	3077	43228	43260	56621;56622	56621					0.036968414719467546
RYGPIGPEGD	10	Unmodified	_RYGPIGPEGD_					0	0	0			REV__ENSG00000171502|ENST00000370571|COL24A1	REV__ENSG00000171502|ENST00000370571|COL24A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2920532226562	2	530.756538	1059.49852	-0.69207	-0.00036732	-3.1119	-0.0016517	-3.804	-0.002019	530.7546227272127	28.645	0.29977	28.645	28.489	28.789	0					9	5	2	0	0	0	0.026867	1	950	950		51.193	19.663	1	40310	+		52215	21621	43229	43261	56623	56623					-0.028846084588622034
RYGSPINTF	9	Unmodified	_RYGSPINTF_					0	0	0		ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	ENSG00000188112|ENST00000341865|C6orf132	MULTI-MSMS	OvCa99_classI_Rep5	1	527.7706909179688	2	527.769448	1053.52434	2.1606	0.0011403	-0.17683	-9.3323E-05	1.9838	0.001047	527.7691985090656	80.107	1.2522	80.107	79.741	80.993	0					60	29	3	0	0	0	0.070405	1	8195	8195		107.01	5.4068	1	6713800			52216	8452	43230	43262	56624	56624					-0.0002771421659417683
RYHKQLVV	8	Unmodified	_RYHKQLVV_					0	0	0			REV__ENSG00000167306|ENST00000285039|MYO5B	REV__ENSG00000167306|ENST00000285039|MYO5B	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.8146362304688	2	521.811451	1041.60835	-0.59233	-0.00030908	3.2047	0.0016722	2.6123	0.0013631	521.8131591315095	68.904	2.2928	65.414	65.113	67.406	-3.4902					139	46	6	0	0	0	0.73938	1	5186	5186		31.955	2.8053	1	4748000	+		52217	21269	43231	43263	56625	56625					0.08920861671003877
RYHRLKEKM	9	Unmodified	_RYHRLKEKM_					0	0	0		ENSG00000235699|ENST00000438525|CXorf51B;ENSG00000224440|ENST00000458472|CXorf51A	ENSG00000235699|ENST00000438525|CXorf51B	ENSG00000235699|ENST00000438525|CXorf51B	MULTI-SECPEP	OvCa9_classI_Rep2	2	420.2347106933594	3	420.904641	1259.69209	1.6803	0.00070725	4.2021	0.0017687	5.8824	0.0024759	420.9064388471491	90.858	0.60961	89.623	89.291	89.901	-1.2355					43	11	5	0	0	0	0.027462	1	8068	8068		12.812	0.60503	1	106300			52218	9255	43232	43264	56626	56626					0.07263649776359671
RYHRLYIL	8	Unmodified	_RYHRLYIL_					0	0	0			REV__ENSG00000157911|ENST00000447513|PEX10	REV__ENSG00000157911|ENST00000447513|PEX10	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3289184570312	2	567.33255	1132.65055	-2.6412	-0.0014984	-2.391	-0.0013565	-5.0322	-0.0028549	567.3310908608092	141.92	3.9983	140.91	138.91	142.91	-1.0106					224	80	5	0	0	0	0.74679	1	11811	11811		28.254	1.5614	1	127690	+		52219	20540	43233	43265	56627	56627					0.08952837079368692
RYIANTVEL	9	Unmodified	_RYIANTVEL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	OvCa99_classI_Rep5	1	539.799072265625	2	539.798206	1077.58186	2.042	0.0011022	-0.78561	-0.00042407	1.2563	0.00067817	539.7978845429078	82.84	0.89805	82.84	82.437	83.335	0					48	18	3	0	0	0	0.046778	2	8602	8574;8602		120.87	27.966	1	57672000			52220	3322	43234	43266	56628;56629	56629					0.0461712798901317
RYIDRIHIF	9	Unmodified	_RYIDRIHIF_					0	0	0		PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant;PRPF8|p.Q2065Hfs*8|1|0.04|ENSG00000174231|chr17:1653809-1653810|-/G|frameshift_variant;ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.Q1835Afs*4|1|0.07|ENSG00000174231|chr17:1658255-1658256|-/C|frameshift_variant;PRPF8|p.F1684Dfs*30|1|0.07|ENSG00000174231|chr17:1659445-1659446|-/AAGTCAGGAGATCGAGACCATC|frameshift_variant	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	411.5690612792969	3	411.568135	1231.68258	3.0963	0.0012743	-1.1272	-0.00046394	1.9691	0.0008104	411.567614839046	85.065	1.2379	85.065	84.716	85.954	0					79	29	4	0	0	0	0.44568	1	8896	8896		54.722	24.583	1	6875900			52221	7449	43235	43267	56630	56630					0.07600204762502472
RYIDRIHIF	9	Unmodified	_RYIDRIHIF_					0	0	0		PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant;PRPF8|p.Q2065Hfs*8|1|0.04|ENSG00000174231|chr17:1653809-1653810|-/G|frameshift_variant;ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.Q1835Afs*4|1|0.07|ENSG00000174231|chr17:1658255-1658256|-/C|frameshift_variant;PRPF8|p.F1684Dfs*30|1|0.07|ENSG00000174231|chr17:1659445-1659446|-/AAGTCAGGAGATCGAGACCATC|frameshift_variant	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	616.8497924804688	2	616.848564	1231.68258	2.0075	0.0012383	0.3145	0.000194	2.322	0.0014323	616.8486676926756	85.069	0.82635	85.069	84.758	85.585	0					58	19	4	0	0	0	0.33652	1	8903	8903		58.782	7.2542	1	5461700			52222	7449	43235	43267	56631	56631					0.07600204762502472
RYIFAKNLF	9	Unmodified	_RYIFAKNLF_					0	0	0		nc|ENSG00000114956|Q16854-3|DGUOK;nc|ENSG00000114956|Q16854-5|DGUOK;ENSG00000114956|ENST00000264093|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	nc|ENSG00000114956|Q16854-3|DGUOK	MULTI-MSMS	OvCa99_classI_Rep5	1	586.3357543945312	2	586.334759	1170.65496	2.5359	0.0014869	-0.2529	-0.00014829	2.283	0.0013386	586.334583599986	97.862	1.1546	97.862	97.397	98.552	0					91	26	5	0	0	0	0.071436	2	10751	10751;10775		106.42	37.628	1	11234000			52223	3051	43236	43268	56632;56633	56632					0.07646301502268216
RYIKNPRIVL	10	Unmodified	_RYIKNPRIVL_					0	0	0		ENSG00000163468|ENST00000295688|CCT3;nc|ENSG00000163468|P49368-2|CCT3	ENSG00000163468|ENST00000295688|CCT3	ENSG00000163468|ENST00000295688|CCT3	MULTI-MSMS	OvCa9_classI_Rep4_	4	636.3995971679688	2	636.400964	1270.78738	-6.0266	-0.0038353	2.02	0.0012855	-4.0066	-0.0025498	636.4021340969482	159.63	1.4705	158.02	157.73	159.2	-1.6101					96	32	4	0	0	0	0.86416	1	15828	15828		10.866	0.6003	1	297970			52224	6311	43237	43269	56634	56634					0.1628132623905003
RYIPTAAAF	9	Unmodified	_RYIPTAAAF_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1;ENST00000498837.1_1_3:127786720-127788502:+|nuORF;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OvCa99_classI_Rep5	1	505.2776794433594	2	505.276909	1008.53927	2.235	0.0011293	-0.88778	-0.00044857	1.3472	0.00068073	505.27656906561225	86.868	3.3317	86.868	86.431	89.763	0					250	80	6	0	0	0	0.074342	5	9184	9154;9184;9214;9244;9275		104.75	25.296	1	155250000			52225	1242;1335	43238	43270	56635;56636;56637;56638;56639	56636					0.035337776513983954
RYIRDAHTF	9	Unmodified	_RYIRDAHTF_					0	0	0		ARHGAP35|p.N1348Tfs*14|1|0.33|ENSG00000160007|chr19:46999308-46999308|C/-|frameshift_variant;ENSG00000160007|ENST00000672722|ARHGAP35;ARHGAP35|p.E490Rfs*15|1|0.25|ENSG00000160007|chr19:46920142-46920143|GG/-|frameshift_variant;ARHGAP35|p.S1027Rfs*5|1|0.21|ENSG00000160007|chr19:46921756-46921762|CAATTTT/-|frameshift_variant	ARHGAP35|p.N1348Tfs*14|1|0.33|ENSG00000160007|chr19:46999308-46999308|C/-|frameshift_variant	ARHGAP35|p.N1348Tfs*14|1|0.33|ENSG00000160007|chr19:46999308-46999308|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	589.8074340820312	2	589.806897	1177.59924	-0.26194	-0.00015449	0.32321	0.00019063	0.061272	3.6139E-05	589.8070508269394	43.219	0.72284	43.219	43.014	43.737	0					48	16	4	0	0	0	0.14998	1	2834	2834		84.916	30.139	1	2072000			52226	109	43239	43271	56640	56640					0.017544683146297757
RYITKGNLF	9	Unmodified	_RYITKGNLF_					0	0	0		nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B;nc|ENSG00000275052|Q5MIZ7-2|PPP4R3B;ENSG00000275052|ENST00000616407|PPP4R3B;ENST00000482826.1_1_2:55795287-55800821:-|nuORF;nc|ENSG00000275052|Q5MIZ7-5|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	nc|ENSG00000275052|Q5MIZ7-3|PPP4R3B	MULTI-MSMS	OvCa99_classI_Rep5	1	556.3180541992188	2	556.316566	1110.61858	0.36263	0.00020174	-0.41655	-0.00023174	-0.053926	-3E-05	556.3161519836968	70.802	0.70193	70.802	70.565	71.267	0					43	17	4	0	0	0	0.3076	1	6816	6816		62.107	19.711	1	2359700			52227	9566	43240	43272	56641	56641					0.0676942460556802
RYKEENNDHL	10	Unmodified	_RYKEENNDHL_					0	0	0		ENSG00000138592|ENST00000307179|USP8;nc|ENSG00000138592|P40818-2|USP8;ENST00000419830.2_1_15:50786258-50791282:+|nuORF	ENSG00000138592|ENST00000307179|USP8	ENSG00000138592|ENST00000307179|USP8	MULTI-MSMS	OvCa99_classI_Rep5	1	439.87799072265625	3	439.877586	1316.61093	1.066	0.00046892	-1.0861	-0.00047774	-0.020049	-8.8192E-06	439.8770823033968	30.556	0.69394	30.556	30.334	31.027	0					35	13	4	0	0	0	0.43508	1	1182	1182		63.426	9.8296	1	547250			52228	4693	43241	43273	56642	56642					-0.03471379452662404
RYKGPGFEYF	10	Unmodified	_RYKGPGFEYF_					0	0	0		nc|ENSG00000166133|Q8IZ73-2|RPUSD2;ENSG00000166133|ENST00000315616|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	nc|ENSG00000166133|Q8IZ73-2|RPUSD2	MULTI-MSMS	OvCa99_classI_Rep5	1	632.3096313476562	2	632.31148	1262.60841	2.4988	0.00158	-0.28802	-0.00018212	2.2107	0.0013979	632.3112802660423	84.983	0.98901	84.983	84.716	85.705	0					49	23	3	0	0	0	0.36605	2	8894	8894;8921		72.879	24.92	1	4681100			52229	6641	43242	43274	56643;56644	56643					-0.012391831196737257
RYKHHGAV	8	Unmodified	_RYKHHGAV_					0	0	0		ENSG00000083457|ENST00000263087|ITGAE	ENSG00000083457|ENST00000263087|ITGAE	ENSG00000083457|ENST00000263087|ITGAE	MULTI-SECPEP	OvCa9_classI_Rep2	2	483.826416015625	2	484.264668	966.514782	-0.36178	-0.0001752	-1.0887	-0.0005272	-1.4504	-0.0007024	484.2639763337066	73.687	1.8322	71.287	70.687	72.52	-2.3999					98	34	5	0	0	0	0.028476	1	5947	5947		37.028	13.986	1	226130			52230	1693	43243	43275	56645	56645					0.030185622885596786
RYKKDMNAPI	10	Unmodified	_RYKKDMNAPI_					0	0	0			REV__ENSG00000198734|ENST00000367797|F5	REV__ENSG00000198734|ENST00000367797|F5	MULTI-MSMS	OvCa99_classI_Rep5	1	618.3314819335938	2	618.33189	1234.64923	1.8423	0.0011392	-2.9174	-0.0018039	-1.0751	-0.00066474	618.3299855268739	80.219	2.8219	80.219	78.791	81.613	0					156	68	3	0	0	0	0.45822	1	8161	8161		60.118	5.3959	1	1801700	+	+	52231	23055	43244	43276	56646	56646					0.041288349282922354
RYKLYQEMF	9	Unmodified	_RYKLYQEMF_					0	0	0		DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.F3496Wfs*92|1|0.14|ENSG00000197102|chr14:102034043-102034044|-/GACCTGGCAGCTGTCGAGGC|frameshift_variant;DYNC1H1|p.P2596Tfs*19|1|0.06|ENSG00000197102|chr14:102016936-102016937|-/A|frameshift_variant;DYNC1H1|p.E1316*|1|0.12|ENSG00000197102|chr14:102000128-102000129|-/C|frameshift_variant;DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	639.3228759765625	2	639.320991	1276.62743	2.6061	0.0016662	-0.20586	-0.00013161	2.4003	0.0015345	639.320742881558	86.095	1.1827	86.095	85.83	87.013	0					73	28	4	0	0	0	0.28934	2	9048	9048;9078		64.207	26.396	1	12616000			52232	767;768	43245	43277	56647;56648	56647					0.000180301797172433
RYKNKRIMHRI	11	Unmodified	_RYKNKRIMHRI_					0	0	0			REV__ENSG00000108107|ENST00000344063|RPL28	REV__ENSG00000108107|ENST00000344063|RPL28	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.3201599121094	3	505.633145	1513.8776	-0.16154	-8.168E-05	-0.29214	-0.00014771	-0.45368	-0.00022939	505.63314964783905	59.629	0.19717	56.237	56.1	56.297	-3.392					6	3	2	0	0	0	0.026497	1	3998	3998		9.6461	6.9581	1	15964	+		52233	17874	43246	43278	56649	56649					0.14122052295829235
RYKQDVERF	9	Unmodified	_RYKQDVERF_					0	0	0		ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	MULTI-MSMS	OvCa99_classI_Rep5	1	414.21929931640625	3	414.219283	1239.63602	0.25381	0.00010513	-0.31493	-0.00013045	-0.061129	-2.5321E-05	414.21911855309594	40.27	0.77922	40.27	40.016	40.795	0					38	16	3	0	0	0	0.38969	1	2436	2436		43.651	9.1499	1	1521400			52234	8900	43247	43279	56650	56650					0.025787201405364613
RYKRLEKLNPV	11	Unmodified	_RYKRLEKLNPV_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa9_classI_Rep3	3	472.2951354980469	3	472.620899	1414.84087	-0.032745	-1.5476E-05	-0.89873	-0.00042476	-0.93147	-0.00044023	472.6205469693349	95.442	0.89479	93.546	93.211	94.105	-1.8956					28	17	2	0	0	0	0.026033	1	6198	6198		28.577	10.046	1	47311	+		52235	28942;32737	43248	43280	56651	56651					0.15004078950937583
RYKVFVDLF	9	Unmodified	_RYKVFVDLF_					0	0	0		ENSG00000151790|ENST00000536354|TDO2	ENSG00000151790|ENST00000536354|TDO2	ENSG00000151790|ENST00000536354|TDO2	MULTI-MSMS	OvCa99_classI_Rep5	1	593.8358154296875	2	593.834591	1185.65463	2.1329	0.0012666	-0.70269	-0.00041728	1.4302	0.00084931	593.8341162323039	112.86	2.865	112.86	112.39	115.25	0					161	64	5	0	0	0	0.18193	3	12862	12838;12862;12886		79.451	28.116	1	9392700			52236	5584	43249	43281	56652;56653;56654	56653					0.06922881782406876
RYKYKLMR	8	Oxidation (M)	_RYKYKLM(Oxidation (M))R_		RYKYKLM(1)R		RYKYKLM(56)R	0	0	1		PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant;PRPF8|p.Q2065Hfs*8|1|0.04|ENSG00000174231|chr17:1653809-1653810|-/G|frameshift_variant;ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.Q1835Afs*4|1|0.07|ENSG00000174231|chr17:1658255-1658256|-/C|frameshift_variant;PRPF8|p.F1684Dfs*30|1|0.07|ENSG00000174231|chr17:1659445-1659446|-/AAGTCAGGAGATCGAGACCATC|frameshift_variant;ENST00000573716.1_1_17:1581802-1582496:-|nuORF	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	587.3314208984375	2	587.331693	1172.64883	0.25085	0.00014733	-3.812	-0.0022389	-3.5611	-0.0020916	587.3294516842681	63.302	2.4092	63.302	62.976	65.385	0					180	59	6	0	0	0	0.64026	1	5698	5698		55.504	6.0627	1	28368000			52237	7449	43250	43282	56655	56655		226			0.06941459999097788
RYKYLRRLFRF	11	Unmodified	_RYKYLRRLFRF_					0	0	0		ENSG00000115446|ENST00000357765|UNC50	ENSG00000115446|ENST00000357765|UNC50	ENSG00000115446|ENST00000357765|UNC50	MULTI-MSMS	OvCa9_classI_Rep3	3	539.9878540039062	3	539.987805	1616.94158	-6.1211	-0.0033053	2.3779	0.0012841	-3.7431	-0.0020213	539.9889211011988	163.98	0.3024	162.59	162.42	162.72	-1.3925					24	6	5	0	0	0	0.72582	1	14331	14331		3.4087	1.8857	1	771380			52238	3099	43251	43283	56656	56656					0.15779155724408156
RYKYPSEE	8	Unmodified	_RYKYPSEE_					0	0	0		TMEM161A|p.H42Y|1|0.15|ENSG00000064545|chr19:19133194-19133194|G/A|missense_variant	TMEM161A|p.H42Y|1|0.15|ENSG00000064545|chr19:19133194-19133194|G/A|missense_variant	TMEM161A|p.H42Y|1|0.15|ENSG00000064545|chr19:19133194-19133194|G/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	535.3273315429688	2	536.258914	1070.50327	-1.1639	-0.00062414	0.51073	0.00027388	-0.65316	-0.00035026	536.2596676276254	59.206	0.26334	56.426	56.347	56.61	-2.7801					7	4	2	0	0	0	0.028476	1	4318	4318		40.573	0	1	9024.8			52239	32964	43252	43284	56657	56657					-0.029157243160852886
RYLACHRCH	9	Unmodified	_RYLACHRCH_					0	0	0		ENSG00000167562|ENST00000391785|ZNF701;nc|ENSG00000167562|Q9NV72|ZNF701	ENSG00000167562|ENST00000391785|ZNF701	ENSG00000167562|ENST00000391785|ZNF701	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.8082885742188	2	579.774019	1157.53349	-0.35041	-0.00020316	1.389	0.00080531	1.0386	0.00060216	580.276263826876	66.561	0.24783	66.561	66.452	66.7	0					7	4	2	0	0	0	0.027448	1	6196	6196		63.306	26.278	1	290140			52240	6808	43253	43285	56658	56658					-0.03897967403531766
RYLAKQVPDL	10	Unmodified	_RYLAKQVPDL_					0	0	0			REV__ENST00000600016.1_1_19:52785420-52785528:+|nuORF	REV__ENST00000600016.1_1_19:52785420-52785528:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	401.56695556640625	3	401.567912	1201.68191	1.3726	0.00055117	-4.3693	-0.0017546	-2.9967	-0.0012034	401.56610080630816	22.082	0.14604	22.082	21.964	22.11	0					7	4	2	0	0	0	0.79186	1	174	174		20.03	2.6655	1	12086	+		52241	22800	43254	43286	56659	56659					0.0891336532281457
RYLDELMKL	9	Unmodified	_RYLDELMKL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	590.8265991210938	2	590.823366	1179.63218	2.7534	0.0016268	-0.026309	-1.5544E-05	2.7271	0.0016112	590.823125239032	107.75	0.76231	107.75	107.52	108.28	0					41	17	3	0	0	0	0.22035	1	12157	12157		72.879	16.445	1	1389600			52242	4862	43255	43287	56660	56660					0.04954914322502191
RYLDKTEQW	9	Unmodified	_RYLDKTEQW_					0	0	0		CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	CON__P01030;nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	OvCa99_classI_Rep5	1	619.813720703125	2	619.811845	1237.60914	-0.069595	-4.3136E-05	0.15792	9.7878E-05	0.08832	5.4742E-05	619.8118870428951	62.561	1.1993	62.561	62.335	63.534	0					80	29	5	0	0	0	0.056083	2	5597	5567;5597		120.31	56.099	1	11826000		+	52243	9254;613	43256	43288	56661;56662	56662					-0.00016388470635320118
RYLDWIKKI	9	Unmodified	_RYLDWIKKI_					0	0	0		nc|ENSG00000129455|O60259-2|KLK8;nc|ENSG00000129455|O60259-3|KLK8;ENSG00000129455|ENST00000695909|KLK8	nc|ENSG00000129455|O60259-2|KLK8	nc|ENSG00000129455|O60259-2|KLK8	MULTI-MSMS	OvCa99_classI_Rep5	1	412.24993896484375	3	412.248403	1233.72338	3.4104	0.0014059	-0.63755	-0.00026283	2.7728	0.0011431	412.24803471816006	94.754	0.85067	94.754	94.433	95.284	0					58	19	4	0	0	0	0.13011	1	10313	10313		89.029	16.15	1	3683600			52244	15008	43257	43289	56663	56663					0.11586546082116911
RYLEKNVKL	9	Unmodified	_RYLEKNVKL_					0	0	0		ENSG00000137574|ENST00000260129|TGS1;ENST00000523948.5_1_8:56686169-56737149:+|nuORF	ENSG00000137574|ENST00000260129|TGS1	ENSG00000137574|ENST00000260129|TGS1	MULTI-MSMS	OvCa99_classI_Rep5	1	581.85302734375	2	581.850773	1161.68699	-0.87854	-0.00051118	0.46827	0.00027246	-0.41027	-0.00023872	581.8510121188773	49.266	1.7895	49.266	48.94	50.73	0					95	40	4	0	0	0	0.055627	2	3682	3653;3682		115.49	25.124	1	8944500			52245	4600	43258	43290	56664;56665	56665					0.11261669185432766
RYLEKPMEI	9	Unmodified	_RYLEKPMEI_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	OvCa99_classI_Rep5	1	589.8167114257812	2	589.815541	1177.61653	0.084939	5.0098E-05	-0.56981	-0.00033608	-0.48487	-0.00028599	589.8152536393142	70.859	3.0313	70.859	70.369	73.4	0					178	75	5	0	0	0	0.066102	3	6820	6820;6850;6881		109.48	16.335	1	75284000			52246	6923	43259	43291	56666;56667;56668	56666					0.03482627805442462
RYLENGKETL	10	Unmodified	_RYLENGKETL_					0	0	0		nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;HLA-F|p.D248Rfs*89|1|0.04|ENSG00000204642|chr6:29725161-29725162|-/A|frameshift_variant;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-MSMS	OvCa99_classI_Rep5	1	611.8273315429688	2	611.824952	1221.63535	-0.38217	-0.00023382	0.044184	2.7033E-05	-0.33798	-0.00020679	611.8249818650438	51.809	1.6702	51.809	51.544	53.214	0					117	38	5	0	0	0	0.027228	2	4037	4009;4037		141.52	41.244	1	23375000			52247	9098;8996;9016	43260	43292	56669;56670	56670					0.03339880700855247
RYLENGKETL	10	Unmodified	_RYLENGKETL_					0	0	0		nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;HLA-F|p.D248Rfs*89|1|0.04|ENSG00000204642|chr6:29725161-29725162|-/A|frameshift_variant;ENST00000484704.5_1_6:29691969-29693843:+|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000487245.5_1_6:31236948-31239147:-|nuORF;ENST00000495183.5_1_6:29910749-29913287:+|nuORF;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	nc|ENSG00000204642|P30511|HLA-F;nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-MSMS	OvCa99_classI_Rep5	1	408.220458984375	3	408.21906	1221.63535	0.59028	0.00024096	-0.59656	-0.00024353	-0.0062799	-2.5636E-06	408.2187984092312	51.809	1.2836	51.809	51.544	52.828	0					75	29	6	0	0	0	0.31473	1	4014	4014		79.07	0.80624	1	6648600			52248	9098;8996;9016	43260	43292	56671	56671					0.03339880700855247
RYLEQLHQL	9	Unmodified	_RYLEQLHQL_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	OvCa99_classI_Rep5	1	600.3316650390625	2	600.330205	1198.64586	-0.067381	-4.0451E-05	0.23818	0.00014298	0.1708	0.00010253	600.3303613241826	73.257	2.3319	73.257	72.877	75.209	0					140	58	5	0	0	0	0.025955	3	7192	7162;7192;7224		139.97	68.675	1	44986000			52249	6923	43261	43293	56672;56673;56674	56673					0.05447908145947622
RYLEQLHQL	9	Unmodified	_RYLEQLHQL_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	OvCa99_classI_Rep5	1	400.5572814941406	3	400.555895	1198.64586	1.1494	0.0004604	-0.53614	-0.00021476	0.61327	0.00024565	400.55558075217044	73.259	0.79757	73.259	72.994	73.792	0					57	19	4	0	0	0	0.22621	2	7200	7171;7200		78.264	26.736	1	5207200			52250	6923	43261	43293	56675;56676	56676					0.05447908145947622
RYLEVMRKL	9	Unmodified	_RYLEVMRKL_					0	0	0		PRRX2-PPP2R4|2|fusion;PRRX2-PPP2R4|1|fusion;PRRX2-PPP2R4|3|fusion;nc|ENSG00000119383|Q15257-4|PTPA;nc|ENSG00000119383|Q15257-3|PTPA;ENSG00000119383|ENST00000393370|PTPA;nc|ENSG00000119383|Q15257|PTPA	PRRX2-PPP2R4|2|fusion	PRRX2-PPP2R4|2|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	403.238525390625	3	403.237509	1206.6907	1.5123	0.00060981	-1.7993	-0.00072556	-0.28705	-0.00011575	403.2367154366635	66.641	0.72367	66.641	66.412	67.136	0					46	17	4	0	0	0	0.10188	1	6178	6178		96.665	26.266	1	5744400			52251	15526	43262	43294	56677	56677					0.09562015687629355
RYLEVMRKL	9	Unmodified	_RYLEVMRKL_					0	0	0		PRRX2-PPP2R4|2|fusion;PRRX2-PPP2R4|1|fusion;PRRX2-PPP2R4|3|fusion;nc|ENSG00000119383|Q15257-4|PTPA;nc|ENSG00000119383|Q15257-3|PTPA;ENSG00000119383|ENST00000393370|PTPA;nc|ENSG00000119383|Q15257|PTPA	PRRX2-PPP2R4|2|fusion	PRRX2-PPP2R4|2|fusion	MULTI-MATCH	OvCa9_classI_Rep3	3		3	403.237509	1206.6907	1.6718	0.00067415	1.6241	0.00065491	3.296	0.0013291	403.2381280462312	69.177	0.74863	66.363	66.112	66.861	-2.8143	-0.18594	0.0036043	NaN	96.665	32	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54075			52252	15526	43262	43294							0.09562015687629355
RYLEVMRKL	9	Unmodified	_RYLEVMRKL_					0	0	0		PRRX2-PPP2R4|2|fusion;PRRX2-PPP2R4|1|fusion;PRRX2-PPP2R4|3|fusion;nc|ENSG00000119383|Q15257-4|PTPA;nc|ENSG00000119383|Q15257-3|PTPA;ENSG00000119383|ENST00000393370|PTPA;nc|ENSG00000119383|Q15257|PTPA	PRRX2-PPP2R4|2|fusion	PRRX2-PPP2R4|2|fusion	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	403.237509	1206.6907	1.07	0.00043148	5.6698	0.0022863	6.7399	0.0027178	403.2393516055169	70.124	0.54021	66.643	66.345	66.885	-3.4812	0.094057	0.0084984	NaN	96.665	24	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30281			52253	15526	43262	43294							0.09562015687629355
RYLHSHHFL	9	Unmodified	_RYLHSHHFL_					0	0	0		nc|ENSG00000164944|Q69YN4-3|VIRMA;nc|ENSG00000164944|Q69YN4-4|VIRMA;nc|ENSG00000164944|Q69YN4-2|VIRMA;ENSG00000164944|ENST00000297591|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	nc|ENSG00000164944|Q69YN4-3|VIRMA	MSMS	OvCa99_classI_Rep5	1	403.8799133300781	3	403.880713	1208.62031	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.304	1	45.304	44.804	45.804	0								0	0	0	0.16874	1	3122	3122		54.722	3.5297	1				52254	15150	43263	43295	56678	56678					0.024344784141703713
RYLISPRLE	9	Unmodified	_RYLISPRLE_					0	0	0		AluJr_dup61011|chr14:35318054-35318354:-|1.18597135623933|0.2842206706305247|2.06|429.0|23|3|anti-sense	AluJr_dup61011|chr14:35318054-35318354:-|1.18597135623933|0.2842206706305247|2.06|429.0|23|3|anti-sense	AluJr_dup61011|chr14:35318054-35318354:-|1.18597135623933|0.2842206706305247|2.06|429.0|23|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	573.8365478515625	2	573.835123	1145.65569	1.9339	0.0011097	-0.52962	-0.00030391	1.4043	0.00080583	573.8348381216489	85.026	2.6234	85.026	84.431	87.054	0					187	63	4	0	0	0	0.1944	1	8884	8884		77.318	3.0625	1	90195000			52255	68	43264	43296	56679	56679					0.08869096151329359
RYLLHAKLLL	10	Unmodified	_RYLLHAKLLL_					0	0	0			REV__tr|A0A553SPM3|A0A553SPM3_NIACIAPCfamilypermeaseOS=NialliacirculansOX=1397GN=CEQ21_26690PE=4SV=1	REV__tr|A0A553SPM3|A0A553SPM3_NIACIAPCfamilypermeaseOS=NialliacirculansOX=1397GN=CEQ21_26690PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	620.3624877929688	2	620.400433	1238.78631	1.8129	0.0011247	-3.1634	-0.0019626	-1.3505	-0.00083784	620.397361431133	77.429	0.29167	77.429	77.252	77.544	0					9	6	2	0	0	0	0.02725	1	7796	7796		21.96	12.254	1	144970	+		52256	30550	43265	43297	56680	56680					0.17647111870178378
RYLPDTLLL	9	Unmodified	_RYLPDTLLL_					0	0	0		ENST00000207636.9_1_22:19951681-19956256:+|nuORF;nc|ENSG00000093010|P21964-2|COMT;ENSG00000093010|ENST00000361682|COMT	ENST00000207636.9_1_22:19951681-19956256:+|nuORF	ENST00000207636.9_1_22:19951681-19956256:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	552.3277587890625	2	552.326599	1102.63865	2.1245	0.0011734	-0.22074	-0.00012192	1.9038	0.0010515	552.3264511784496	121.87	1.5228	121.87	121.57	123.09	0					93	32	5	0	0	0	0.11471	2	14035	14035;14059		93.195	5.4682	1	7703000			52257	1906	43266	43298	56681;56682	56681					0.09143175545523263
RYLPPSRRE	9	Unmodified	_RYLPPSRRE_					0	0	0		SEMA3F-RBM6|1|fusion;SEMA3F-RBM6|4|fusion;SEMA3F-RBM6|3|fusion;SEMA3F-RBM6|2|fusion;ENST00000483350.1_1_3:50036895-50096022:+|nuORF;ENST00000441115.5_1_3:50012785-50103056:+|nuORF;nc|ENSG00000004534|P78332-2|RBM6;ENSG00000004534|ENST00000266022|RBM6	SEMA3F-RBM6|1|fusion	SEMA3F-RBM6|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	587.3316040039062	2	587.327996	1172.64144	0.25085	0.00014733	2.4822	0.0014579	2.7331	0.0016052	587.3294516842681	63.302	2.4092	63.302	62.976	65.385	0					180	59	6	0	0	0	0.38969	1	5671	5671		52.937	5.0211	1	28368000			52258	32807	43267	43299	56683	56683					0.0620244372300931
RYLPQCSYF	9	Unmodified	_RYLPQCSYF_					0	0	0		ENSG00000118971|ENST00000261254|CCND2;nc|ENSG00000118971|P30279-2|CCND2	ENSG00000118971|ENST00000261254|CCND2	ENSG00000118971|ENST00000261254|CCND2	MULTI-MSMS	OvCa99_classI_Rep5	1	588.7800903320312	2	588.778959	1175.54336	2.714	0.0015979	-0.17417	-0.00010255	2.5398	0.0014954	588.7787638536903	102.54	1.3877	102.54	102.21	103.6	0					85	32	4	0	0	0	0.40818	1	11419	11419		51.193	10.415	1	2440200			52259	3335	43268	43300	56684	56684					-0.03738500917188503
RYLPTGSFPF	10	Unmodified	_RYLPTGSFPF_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-MSMS	OvCa99_classI_Rep5	1	592.8104858398438	2	592.808574	1183.60259	2.0885	0.0012381	0.26617	0.00015779	2.3547	0.0013959	592.8087476547588	118.22	1.6288	118.22	117.84	119.47	0					102	34	4	0	0	0	0.15491	2	13554	13554;13578		101.25	42.471	1	7534500			52260	14937	43269	43301	56685;56686	56685					0.01813718368634909
RYLPTGSFPFL	11	Unmodified	_RYLPTGSFPFL_					0	0	0		nc|ENSG00000104723|Q13454-2|TUSC3;ENSG00000104723|ENST00000503731|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	nc|ENSG00000104723|Q13454-2|TUSC3	MULTI-MSMS	OvCa99_classI_Rep5	1	649.3540649414062	2	649.350606	1296.68666	1.8902	0.0012274	0.51985	0.00033757	2.4101	0.001565	649.3508931970288	135.01	2.7966	135.01	134.65	137.45	0					102	59	2	0	0	0	0.14191	3	15714	15714;15738;15776		88.177	36.326	1	8858500			52261	14937	43270	43302	56687;56688;56689	56687					0.05018249465547342
RYLQSVNELL	10	Unmodified	_RYLQSVNELL_					0	0	0		ENSG00000180917|ENST00000434935|CMTR2	ENSG00000180917|ENST00000434935|CMTR2	ENSG00000180917|ENST00000434935|CMTR2	MULTI-MSMS	OvCa9_classI_Rep3	3	412.2316589355469	3	412.231189	1233.67174	1.934	0.00079726	-0.68164	-0.00028099	1.2524	0.00051626	412.2308161483838	65.879	3.828	62.933	62.452	66.28	-2.9459					181	75	4	0	0	0	0.75313	1	2750	2750		23.378	3.3474	1	1016400			52262	7899	43271	43303	56690	56690					0.06424757597551434
RYLRKKIDF	9	Unmodified	_RYLRKKIDF_					0	0	0		nc|ENSG00000090989|Q9NV70-2|EXOC1;ENSG00000090989|ENST00000381295|EXOC1;ENST00000505501.1_1_4:56724546-56734701:+|nuORF	nc|ENSG00000090989|Q9NV70-2|EXOC1	nc|ENSG00000090989|Q9NV70-2|EXOC1	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8699951171875	2	619.87204	1237.72953	-3.6059	-0.0022352	-0.65337	-0.00040501	-4.2593	-0.0026402	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.68424	1	13011	13011		21.96	1.9631	1	664560			52263	1856	43272	43304	56691	56691					0.12017064313636183
RYLSKATTL	9	Unmodified	_RYLSKATTL_					0	0	0		nc|ENSG00000130177|Q13042-3|CDC16;nc|ENSG00000130177|Q13042-2|CDC16;ENSG00000130177|ENST00000356221|CDC16;nc|ENSG00000130177|Q13042-4|CDC16	nc|ENSG00000130177|Q13042-3|CDC16	nc|ENSG00000130177|Q13042-3|CDC16	MSMS	OvCa99_classI_Rep5	1	526.8097534179688	2	526.808574	1051.60259	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.456	1	51.456	50.956	51.956	0								0	0	0	0.03228	1	3971	3971		87.696	18.91	1				52264	3964	43273	43305	56692	56692					0.07885718368652306
RYLSPKYIKMF	11	Unmodified	_RYLSPKYIKMF_					0	0	0		ENSG00000161960|ENST00000293831|EIF4A1;ZNF586-EIF4A1|4|fusion;ZNF586-EIF4A1|1|fusion;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ZNF586-EIF4A1|3|fusion;nc|ENSG00000161960|P60842-2|EIF4A1;ZNF586-EIF4A1|2|fusion;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF;ENST00000448133.1_1_13:61211649-61211793:-|nuORF;ENST00000577731.1_1_17:7478540-7480862:+|nuORF	ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000161960|ENST00000293831|EIF4A1	MULTI-MSMS	OvCa99_classI_Rep5	1	482.6051330566406	3	482.603969	1444.79008	2.0342	0.00098172	-0.081602	-3.9381E-05	1.9526	0.00094234	482.6037746259682	85.237	1.1102	85.237	84.923	86.033	0					75	26	5	0	0	0	0.053683	2	8950	8924;8950		125.68	84.602	1	5747100			52265	6146	43274	43306	56693;56694	56694					0.08547413581686669
RYLSRIDYE	9	Unmodified	_RYLSRIDYE_					0	0	0			REV__tr|A0A7D6VZP7|A0A7D6VZP7_9CLOTDUF1836domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21050PE=4SV=1	REV__tr|A0A7D6VZP7|A0A7D6VZP7_9CLOTDUF1836domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21050PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	607.8129272460938	2	607.811845	1213.60914	-0.98076	-0.00059612	0.29029	0.00017644	-0.69047	-0.00041967	607.8119010088207	64.154	0.77785	64.154	63.894	64.672	0					43	18	4	0	0	0	0.55011	1	5814	5814		37.812	0	1	3251400	+		52266	31844	43275	43307	56695	56695					0.010876115293513067
RYLSRIDYE	9	Unmodified	_RYLSRIDYE_					0	0	0			REV__tr|A0A7D6VZP7|A0A7D6VZP7_9CLOTDUF1836domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21050PE=4SV=1	REV__tr|A0A7D6VZP7|A0A7D6VZP7_9CLOTDUF1836domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21050PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	607.811845	1213.60914	-0.98076	-0.00059612	0.29029	0.00017644	-0.69047	-0.00041967	607.8119010088207	64.154	0.77785	64.154	63.894	64.672	0	0	0	NaN	37.812	43	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3251400	+		52267	31844	43275	43307							0.010876115293513067
RYLTGAWRL	9	Unmodified	_RYLTGAWRL_					0	0	0		nc|ENSG00000120697|Q9Y673-2|ALG5;ENSG00000120697|ENST00000239891|ALG5	nc|ENSG00000120697|Q9Y673-2|ALG5	nc|ENSG00000120697|Q9Y673-2|ALG5	MULTI-MSMS	OvCa99_classI_Rep5	1	568.3241577148438	2	568.322183	1134.62981	2.5996	0.0014774	0.49007	0.00027852	3.0897	0.001756	568.3224337210681	86.332	1.1381	86.332	85.663	86.801	0					71	27	3	0	0	0	0.2077	1	9102	9102		75.043	21.692	1	5471800			52268	3444	43276	43308	56696	56696					0.06788246699693445
RYLTGAWRL	9	Unmodified	_RYLTGAWRL_					0	0	0		nc|ENSG00000120697|Q9Y673-2|ALG5;ENSG00000120697|ENST00000239891|ALG5	nc|ENSG00000120697|Q9Y673-2|ALG5	nc|ENSG00000120697|Q9Y673-2|ALG5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	568.322183	1134.62981	-0.5427	-0.00030843	5.658	0.0032156	5.1153	0.0029071	568.3239780269342	88.652	0.2428	86.521	86.364	86.607	-2.1309	0.094333	0.0056913	NaN	75.043	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24640			52269	3444	43276	43308							0.06788246699693445
RYLTVAAVF	9	Unmodified	_RYLTVAAVF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000188229|ENST00000340384|TUBB4B;ENST00000454403.1_1_13:41958968-41959286:-|nuORF;TUBB4A|p.M330Afs*87|1|0.08|ENSG00000104833|chr19:6495510-6495511|AT/-|frameshift_variant;ENSG00000104833|ENST00000264071|TUBB4A	ENSG00000196230|ENST00000327892|TUBB;TUBB4A|p.M330Afs*87|1|0.08|ENSG00000104833|chr19:6495510-6495511|AT/-|frameshift_variant	ENSG00000196230|ENST00000327892|TUBB	MULTI-MSMS	OvCa99_classI_Rep5	1	520.301513671875	2	520.300384	1038.58622	1.6456	0.00085622	0.075597	3.9333E-05	1.7212	0.00089555	520.300435505088	110.62	2.2117	110.62	110.27	112.48	0					91	48	2	0	0	0	0.3076	2	12562	12538;12562		62.107	10.769	1	11543000			52270	8579;2396	43277	43309	56697;56698	56698					0.06846637202556849
RYLTVATVF	9	Unmodified	_RYLTVATVF_					0	0	0		ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.3072509765625	2	535.305667	1068.59678	-0.46453	-0.00024867	-1.6213	-0.00086791	-2.0859	-0.0011166	535.3050142681042	111.57	1.1059	110.06	109.68	110.79	-1.5111					53	20	3	0	0	0	0.51865	1	10299	10299		40.778	3.6191	1	91956			52271	9485	43278	43310	56699	56699					0.06522619856991696
RYMPPAHRNF	10	Unmodified	_RYMPPAHRNF_					0	0	0		ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	MULTI-MSMS	OvCa99_classI_Rep5	1	430.2179260253906	3	430.217108	1287.62949	-0.94556	-0.0004068	0.86391	0.00037167	-0.081644	-3.5125E-05	430.217379025854	43.871	1.3457	43.871	43.227	44.573	0					92	30	4	0	0	0	0.61787	1	2935	2935		39.873	4.3775	1	1092800			52272	4049	43279	43311	56700	56700					-0.0028149629181370983
RYMPQNPHI	9	Unmodified	_RYMPQNPHI_					0	0	0		nc|ENSG00000102054|Q16576-2|RBBP7;RBBP7|p.I319Nfs*10|1|0.08|ENSG00000102054|chrX:16852558-16852559|-/T|frameshift_variant;ENSG00000102054|ENST00000380087|RBBP7	nc|ENSG00000102054|Q16576-2|RBBP7	nc|ENSG00000102054|Q16576-2|RBBP7	MULTI-MSMS	OvCa99_classI_Rep5	1	578.291748046875	2	578.290025	1154.5655	-0.12364	-7.1498E-05	0.028708	1.6601E-05	-0.094929	-5.4897E-05	578.289878535953	57.586	1.2326	57.586	56.961	58.194	0					58	28	4	0	0	0	0.19758	1	4840	4840		76.774	3.8949	1	7210700			52273	14931	43280	43312	56701	56701					-0.005602764487548484
RYMPQNPHII	10	Unmodified	_RYMPQNPHII_					0	0	0		nc|ENSG00000102054|Q16576-2|RBBP7;RBBP7|p.I319Nfs*10|1|0.08|ENSG00000102054|chrX:16852558-16852559|-/T|frameshift_variant;ENSG00000102054|ENST00000380087|RBBP7	nc|ENSG00000102054|Q16576-2|RBBP7	nc|ENSG00000102054|Q16576-2|RBBP7	MULTI-MSMS	OvCa99_classI_Rep5	1	634.83349609375	2	634.832057	1267.64956	0.13516	8.5803E-05	0.068697	4.3611E-05	0.20386	0.00012941	634.8319769372183	70.512	0.74503	70.512	70.286	71.031	0					48	18	4	0	0	0	0.33376	1	6768	6768		76.774	25.581	1	4630600			52274	14931	43281	43313	56702	56702					0.026442546481575846
RYMTVKKRF	9	Unmodified	_RYMTVKKRF_					0	0	0		ENSG00000262655|ENST00000576479|SPON1	ENSG00000262655|ENST00000576479|SPON1	ENSG00000262655|ENST00000576479|SPON1	MULTI-MSMS	OvCa99_classI_Rep5	1	410.2381286621094	3	410.237621	1227.69103	0.63293	0.00025965	-0.46492	-0.00019073	0.16802	6.8927E-05	410.2372877931009	36.007	0.64408	36.007	35.753	36.397	0					29	13	3	0	0	0	0.45024	1	1867	1867		47.228	19.584	1	462740			52275	9511	43282	43314	56703	56703					0.0862943540746528
RYNIPEKYL	9	Unmodified	_RYNIPEKYL_					0	0	0		tr|A0A553SN15|A0A553SN15_NIACID-2-hydroxyaciddehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_23445PE=3SV=1	tr|A0A553SN15|A0A553SN15_NIACID-2-hydroxyaciddehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_23445PE=3SV=1	tr|A0A553SN15|A0A553SN15_NIACID-2-hydroxyaciddehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_23445PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	598.318115234375	2	598.327131	1194.63971	2.0051	0.0011997	-2.0686	-0.0012377	-0.063504	-3.7996E-05	598.3256016092912	110.24	0.26785	110.24	110.09	110.35	0					17	5	4	0	0	0	0.28934	1	12493	12493		64.207	5.4253	1	1779600			52276	33895	43283	43315	56704	56704					0.050173899144283496
RYNPENNTW	9	Unmodified	_RYNPENNTW_					0	0	0		ENST00000494880.5_1_1:185268818-185270317:-|nuORF;ENST00000480769.5_1_1:185267169-185274781:-|nuORF;ENST00000459929.5_1_1:185267169-185275646:-|nuORF;ENSG00000116679|ENST00000367498|IVNS1ABP	ENST00000494880.5_1_1:185268818-185270317:-|nuORF	ENST00000494880.5_1_1:185268818-185270317:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	597.2717895507812	2	597.270344	1192.52613	-0.32824	-0.00019605	-0.033298	-1.9888E-05	-0.36154	-0.00021594	597.2702504029498	61.763	0.87704	61.763	61.501	62.378	0					39	20	2	0	0	0	0.024645	1	5455	5455		141.52	56.36	1	4248800			52277	3195	43284	43316	56705	56705					-0.062427051986333026
RYNPNLNTW	9	Unmodified	_RYNPNLNTW_					0	0	0		ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	ENSG00000178502|ENST00000319121|KLHL11	MULTI-MSMS	OvCa99_classI_Rep5	1	589.293212890625	2	589.291079	1176.56761	1.8191	0.001072	0.65839	0.00038798	2.4775	0.0014599	589.2913713475652	79.623	0.63542	79.623	79.352	79.987	0					36	15	4	0	0	0	0.045281	1	8120	8120		122.18	37.015	1	3787600			52278	7759	43285	43317	56706	56706					-0.013615244393122339
RYPAIIYNI	9	Unmodified	_RYPAIIYNI_					0	0	0		ENST00000507477.1_1_17:47780142-47780651:-|nuORF;ENST00000504260.5_1_17:47779261-47782716:-|nuORF;ENSG00000121073|ENST00000240333|SLC35B1;nc|ENSG00000121073|P78383-2|SLC35B1	ENST00000507477.1_1_17:47780142-47780651:-|nuORF	ENST00000507477.1_1_17:47780142-47780651:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	561.8209838867188	2	561.818941	1121.62333	2.4263	0.0013631	-0.80792	-0.0004539	1.6183	0.00090921	561.8185729824205	108.74	2.4089	108.74	107.9	110.31	0					132	54	4	0	0	0	0.19758	2	12316	12294;12316		76.774	16.656	1	3717600			52279	3470	43286	43318	56707;56708	56708					0.06738308748322197
RYPDNLKHL	9	Unmodified	_RYPDNLKHL_					0	0	0		ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59;ENST00000406807.2_1_6:149812705-149813218:-|nuORF	ENST00000552606.1_1_12:82750710-82752155:-|nuORF	ENST00000552606.1_1_12:82750710-82752155:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	578.317626953125	2	578.317097	1154.61964	-0.71455	-0.00041323	0.42404	0.00024523	-0.2905	-0.000168	578.3172444577626	48.549	0.99699	48.549	48.248	49.245	0					68	22	5	0	0	0	0.1944	2	3580	3556;3580		77.318	15.156	1	4404000			52280	4236	43287	43319	56709;56710	56710					0.04851638974469097
RYPDNLKHLYL	11	Unmodified	_RYPDNLKHLYL_					0	0	0		ENST00000552606.1_1_12:82750710-82752155:-|nuORF;ENSG00000133773|ENST00000256151|CCDC59	ENST00000552606.1_1_12:82750710-82752155:-|nuORF	ENST00000552606.1_1_12:82750710-82752155:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	477.9315185546875	3	477.929621	1430.76703	1.4091	0.00067344	0.58	0.0002772	1.9891	0.00095064	477.9298335726135	79.06	0.79572	79.06	78.75	79.546	0					62	19	5	0	0	0	0.53283	2	8027	8027;8059		50.791	7.3727	1	5803900			52281	4236	43288	43320	56711;56712	56711					0.06888110788622726
RYPDRITLI	9	Unmodified	_RYPDRITLI_					0	0	0		ENST00000566749.5_1_16:30094185-30096380:+|nuORF;ENSG00000149923|ENST00000279387|PPP4C;ENST00000567040.5_1_16:30087698-30094972:+|nuORF	ENST00000566749.5_1_16:30094185-30096380:+|nuORF	ENST00000566749.5_1_16:30094185-30096380:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	573.8366088867188	2	573.835123	1145.65569	1.9339	0.0011097	-0.52962	-0.00030391	1.4043	0.00080583	573.8348381216489	85.026	2.6234	85.026	84.431	87.054	0					187	63	4	0	0	0	0.14998	2	8974	8944;8974		84.916	20.669	1	90195000			52282	5490	43289	43321	56713;56714	56714					0.08869096151329359
RYPDSHQLF	9	Unmodified	_RYPDSHQLF_					0	0	0		nc|ENSG00000138757|Q9UN86-2|G3BP2;ENSG00000138757|ENST00000359707|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	nc|ENSG00000138757|Q9UN86-2|G3BP2	MULTI-MSMS	OvCa99_classI_Rep5	1	581.7882080078125	2	581.78563	1161.55671	-0.52159	-0.00030345	0.17991	0.00010467	-0.34168	-0.00019878	581.7857101945932	68.671	1.3577	68.671	68.274	69.632	0					96	32	5	0	0	0	0.060996	3	6520	6464;6490;6520		112.41	43.624	1	16403000			52283	4721	43290	43322	56715;56716;56717	56717					-0.017609268135856837
RYPNSHTHYF	10	Unmodified	_RYPNSHTHYF_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	OvCa99_classI_Rep5	1	441.20697021484375	3	441.207266	1320.59997	1.5787	0.00069654	-1.7225	-0.00075997	-0.14377	-6.3434E-05	441.20650925213147	45.851	1.9677	45.851	45.454	47.422	0					145	44	6	0	0	0	0.084482	3	3220	3175;3196;3220		117.53	69.566	1	6899500			52284	3691	43291	43323	56718;56719;56720	56720					-0.04750737036306418
RYPNSHTHYF	10	Unmodified	_RYPNSHTHYF_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	441.207266	1320.59997	0.4612	0.00020348	4.2657	0.0018821	4.7269	0.0020856	441.20897386069777	48.881	0.89133	46.121	45.829	46.72	-2.7603	0.13489	0.0075933	NaN	117.53	44	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58297			52285	3691	43291	43323							-0.04750737036306418
RYPSLWRRL	9	Unmodified	_RYPSLWRRL_					0	0	0		nc|ENSG00000099956|Q12824-2|SMARCB1;ENSG00000099956|ENST00000644036|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	MULTI-MSMS	OvCa99_classI_Rep5	1	416.24542236328125	3	416.243763	1245.70946	1.0605	0.00044145	-0.9715	-0.00040438	0.089046	3.7065E-05	416.24335289634735	72.461	2.2002	72.461	71.707	73.907	0					169	54	5	0	0	0	0.3249	1	7018	7018		60.118	9.327	1	16175000			52286	1987	43292	43324	56721	56721					0.09643313373703677
RYPSLWRRL	9	Unmodified	_RYPSLWRRL_					0	0	0		nc|ENSG00000099956|Q12824-2|SMARCB1;ENSG00000099956|ENST00000644036|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	nc|ENSG00000099956|Q12824-2|SMARCB1	MULTI-MSMS	OvCa99_classI_Rep5	1	623.8639526367188	2	623.862006	1245.70946	0.28124	0.00017546	-0.17544	-0.00010945	0.10581	6.6008E-05	623.8619187333813	72.494	1.3598	72.494	71.916	73.276	0					96	33	4	0	0	0	0.26076	1	7055	7055		42.396	0	1	3494300			52287	1987	43292	43324	56722	56722					0.09643313373703677
RYPSNLQLF	9	Unmodified	_RYPSNLQLF_					0	0	0		TEP1|p.P1636Cfs*29|1|0.07|ENSG00000129566|chr14:20380332-20380333|-/CA|frameshift_variant;nc|ENSG00000129566|Q99973-2|TEP1;ENSG00000129566|ENST00000262715|TEP1;ENST00000557627.1_1_14:20869071-20871634:-|nuORF	TEP1|p.P1636Cfs*29|1|0.07|ENSG00000129566|chr14:20380332-20380333|-/CA|frameshift_variant	TEP1|p.P1636Cfs*29|1|0.07|ENSG00000129566|chr14:20380332-20380333|-/CA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	569.3082885742188	2	569.306198	1136.59784	-0.075115	-4.2763E-05	0.027877	1.5871E-05	-0.047237	-2.6892E-05	569.3061195246104	105.02	1.1257	105.02	104.58	105.7	0					81	25	4	0	0	0	0.1944	1	11783	11783		77.318	5.4401	1	8871400			52288	3936	43293	43325	56723	56723					0.035008342259061465
RYPTSIASL	9	Unmodified	_RYPTSIASL_					0	0	0		ENST00000481952.1_1_10:124921781-124922345:+|nuORF;nc|ENSG00000154473|O43684-2|BUB3;ENSG00000154473|ENST00000368865|BUB3	ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENST00000481952.1_1_10:124921781-124922345:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	504.2810363769531	2	504.279649	1006.54475	2.0572	0.0010374	-1.0508	-0.00052991	1.0064	0.00050751	504.2793937428511	85.678	2.46	85.678	85.211	87.671	0					148	59	6	0	0	0	0.045281	2	8986	8986;9016		122.18	5.4543	1	27487000			52289	5739	43294	43326	56724;56725	56724					0.04173456443231771
RYPTSIASLAF	11	Unmodified	_RYPTSIASLAF_					0	0	0		ENST00000481952.1_1_10:124921781-124922345:+|nuORF;nc|ENSG00000154473|O43684-2|BUB3;ENSG00000154473|ENST00000368865|BUB3	ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENST00000481952.1_1_10:124921781-124922345:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	613.33447265625	2	613.332413	1224.65027	2.6454	0.0016225	-0.31636	-0.00019403	2.329	0.0014285	613.3321347747326	115.75	1.1156	115.75	115.3	116.42	0					76	23	5	0	0	0	0.50761	1	13249	13249		53.089	11.662	1	5903300			52290	5739	43295	43327	56726	56726					0.04693372568840459
RYQDAIRVF	9	Unmodified	_RYQDAIRVF_					0	0	0		nc|ENSG00000100129|Q9Y262-2|EIF3L;ENSG00000100129|ENST00000652021|EIF3L;ENST00000457262.1_1_10:43062145-43062928:+|nuORF	nc|ENSG00000100129|Q9Y262-2|EIF3L	nc|ENSG00000100129|Q9Y262-2|EIF3L	MULTI-MSMS	OvCa99_classI_Rep5	1	584.3180541992188	2	584.317097	1166.61964	2.113	0.0012347	-0.13286	-7.7631E-05	1.9802	0.001157	584.3169576021467	80.19	0.83691	80.19	79.907	80.744	0					54	19	4	0	0	0	0.10502	2	8224	8196;8224		95.815	18.498	1	8268400			52291	2012	43296	43328	56727;56728	56728					0.04299638974453046
RYQHLFWWRWQ	11	Unmodified	_RYQHLFWWRWQ_					0	0	0		chrX:97120275-97141665|89|12.45|0.12|6.67|+|0|TE_info:L1PBa1,L1PBa1_dup297,L1,LINE,donor,-,97118913,97120275|None,DIAPH2|9	chrX:97120275-97141665|89|12.45|0.12|6.67|+|0|TE_info:L1PBa1,L1PBa1_dup297,L1,LINE,donor,-,97118913,97120275|None,DIAPH2|9	chrX:97120275-97141665|89|12.45|0.12|6.67|+|0|TE_info:L1PBa1,L1PBa1_dup297,L1,LINE,donor,-,97118913,97120275|None,DIAPH2|9	MULTI-SECPEP	OvCa9_classI_Rep2	2	569.8333129882812	3	569.288143	1704.8426	-0.71363	-0.00040626	3.3012	0.0018793	2.5876	0.0014731	569.2908714162481	98.163	0.29011	97.27	97.12	97.41	-0.89305					7	5	2	0	0	0	0.026505	1	8919	8919		9.2118	3.513	1	16971			52292	574	43297	43329	56729	56729					0.018371327595104958
RYQKGHVLL	9	Unmodified	_RYQKGHVLL_					0	0	0			REV__tr|A0A7D7A2I0|A0A7D7A2I0_9CLOTTocopherolcyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08550PE=4SV=1	REV__tr|A0A7D7A2I0|A0A7D7A2I0_9CLOTTocopherolcyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08550PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.3292236328125	2	557.330008	1112.64546	2.2756	0.0012683	0.38185	0.00021281	2.6575	0.0014811	557.3301980552495	78.151	0.49032	78.151	77.884	78.374	0					25	11	3	0	0	0	0.027462	1	7896	7896		37.159	16.212	1	1531700	+		52293	32538	43298	43330	56730	56730					0.09364533216762538
RYQKSTELL	9	Unmodified	_RYQKSTELL_					0	0	0		ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000197409|ENST00000356476|H3C4;ENSG00000274750|ENST00000614911|H3C6;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000168148|ENST00000366696|H3-4;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000203811|ENST00000369158|H3C14;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000188375|ENST00000340398|H3-5	ENST00000586518.1_1_17:73774674-73775034:-|nuORF	ENST00000586518.1_1_17:73774674-73775034:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	569.318603515625	2	569.316763	1136.61897	-0.4802	-0.00027339	0.044848	2.5533E-05	-0.43535	-0.00024785	569.3167657164306	49.251	1.7888	49.251	48.986	50.775	0					93	40	5	0	0	0	0.043101	2	3683	3652;3683		124.08	30.885	1	11222000			52294	14046	43299	43331	56731;56732	56732					0.056127995347424076
RYQQWMERF	9	Unmodified	_RYQQWMERF_					0	0	0		ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2;ENST00000487229.6_1_17:12905763-12906899:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2;ENST00000484122.5_1_17:12899737-12920449:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-2|ELAC2	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	448.5498352050781	3	448.548635	1342.62407	1.3251	0.00059439	0.80402	0.00036064	2.1292	0.00095503	448.54888758369356	81.429	0.73256	81.429	81.162	81.895	0					45	17	4	0	0	0	0.20111	1	8390	8390		76.17	26.136	1	1881300			52295	891;12594	43300	43332	56733	56733					-0.03353219874293245
RYQRARDM	8	Unmodified	_RYQRARDM_					0	0	0			REV__ENST00000541403.1_1_11:71809825-71814270:-|nuORF	REV__ENST00000541403.1_1_11:71809825-71814270:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.2950439453125	2	548.277449	1094.54035	0.50329	0.00027595	-2.2956	-0.0012586	-1.7923	-0.00098269	548.2762839607211	33.766	1.09	30.978	30.608	31.698	-2.7881					28	21	2	0	0	0	0.028476	1	961	961		23.042	2.2053	1	67426	+		52296	27370	43301	43333	56734	56734					-0.003143312513429919
RYQRLYVKF	9	Unmodified	_RYQRLYVKF_					0	0	0		nc|ENSG00000126464|Q9ULL5-2|PRR12;ENSG00000126464|ENST00000418929|PRR12	nc|ENSG00000126464|Q9ULL5-2|PRR12	nc|ENSG00000126464|Q9ULL5-2|PRR12	MULTI-MSMS	OvCa99_classI_Rep5	1	424.9130859375	3	424.911902	1271.71388	-0.19202	-8.1593E-05	0.25517	0.00010843	0.063148	2.6832E-05	424.9119040124229	64.409	0.5835	64.409	64.21	64.793	0					32	13	4	0	0	0	0.37135	1	5858	5858		54.776	13.35	1	955430			52297	3784	43302	43334	56735	56735					0.08888777796596514
RYQSNHKLF	9	Unmodified	_RYQSNHKLF_					0	0	0			REV__ENST00000522522.5_1_1:243375035-243388582:-|nuORF	REV__ENST00000522522.5_1_1:243375035-243388582:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	596.8169555664062	2	596.814722	1191.61489	3.1335	0.0018701	-0.44132	-0.00026339	2.6922	0.0016067	596.8143723057162	57.305	2.9299	54.154	53.228	56.158	-3.1504					108	83	2	0	0	0	0.68424	1	1667	1667		21.96	0	1	40554	+		52298	27086	43303	43335	56736	56736					0.02674754831696191
RYQTKFRHL	9	Unmodified	_RYQTKFRHL_					0	0	0		RHPN2-CEP89|1|fusion;nc|ENSG00000121289|Q96ST8-3|CEP89;nc|ENSG00000121289|Q96ST8-2|CEP89;ENSG00000121289|ENST00000305768|CEP89	RHPN2-CEP89|1|fusion	RHPN2-CEP89|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	416.9036865234375	3	416.903518	1247.68872	-0.026912	-1.122E-05	-0.53111	-0.00022142	-0.55802	-0.00023264	416.9034752438057	36.141	2.5925	36.141	35.939	38.531	0					132	56	5	0	0	0	0.13849	2	1876	1876;1900		86.882	40.909	1	14087000			52299	32785	43304	43336	56737;56738	56737					0.0747872299402843
RYQTKFRHL	9	Unmodified	_RYQTKFRHL_					0	0	0		RHPN2-CEP89|1|fusion;nc|ENSG00000121289|Q96ST8-3|CEP89;nc|ENSG00000121289|Q96ST8-2|CEP89;ENSG00000121289|ENST00000305768|CEP89	RHPN2-CEP89|1|fusion	RHPN2-CEP89|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	624.8517456054688	2	624.851638	1247.68872	-0.68252	-0.00042647	0.6116	0.00038216	-0.070918	-4.4313E-05	624.8520419826231	36.141	0.99271	36.141	35.892	36.885	0					47	21	4	0	0	0	0.1574	1	1878	1878		77.318	36.539	1	2059600			52300	32785	43304	43336	56739	56739					0.0747872299402843
RYQTQPVTL	9	Unmodified	_RYQTQPVTL_					0	0	0		nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL;nc|ENSG00000197321|O95425-2|SVIL	nc|ENSG00000197321|O95425-4|SVIL	nc|ENSG00000197321|O95425-4|SVIL	MULTI-MSMS	OvCa99_classI_Rep5	1	553.3045654296875	2	553.303655	1104.59276	-0.48912	-0.00027063	0.77918	0.00043112	0.29006	0.00016049	553.3040560040763	69.572	1.1808	69.572	69.228	70.408	0					63	28	3	0	0	0	0.21231	1	6613	6613		74.255	0	1	9748900			52301	8700	43305	43337	56740	56740					0.044645303632933064
RYRGQLHIVG	10	Unmodified	_RYRGQLHIVG_					0	0	0		nc|ENSG00000050628|P43115-11|PTGER3	nc|ENSG00000050628|P43115-11|PTGER3	nc|ENSG00000050628|P43115-11|PTGER3	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.88568115234375	3	400.231634	1197.67307	0.92488	0.00037017	2.7187	0.0010881	3.6436	0.0014583	400.2324789069563	24.976	0.55508	24.976	24.687	25.242	0					11	10	2	0	0	0	0.027411	1	503	503		16.717	8.9129	1	9811.8			52302	14871	43306	43338	56741	56741					0.08214436476964693
RYRHMKRHKKR	11	Unmodified	_RYRHMKRHKKR_					0	0	0			REV__ENST00000471418.5_1_3:114477768-114477897:-|nuORF	REV__ENST00000471418.5_1_3:114477768-114477897:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.965087890625	3	532.647788	1594.92153	1.0196	0.00054306	2.6142	0.0013924	3.6337	0.0019355	532.9823318135559	69.658	1.0411	66.859	66.477	67.519	-2.7989					36	20	3	0	0	0	0.02653	1	3073	3073		3.4087	0	1	42299	+		52303	26283	43307	43339	56742	56742					0.14787081512804434
RYRHMKRHKKR	11	Unmodified	_RYRHMKRHKKR_					0	0	0			REV__ENST00000471418.5_1_3:114477768-114477897:-|nuORF	REV__ENST00000471418.5_1_3:114477768-114477897:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	532.647788	1594.92153	-1.5682	-0.00083532	4.508	0.0024012	2.9398	0.0015659	532.9840622093801	69.31	0.50038	66.69	66.465	66.966	-2.6203	-0.084692	0.0013349	NaN	3.4087	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15263	+		52304	26283	43307	43339							0.14787081512804434
RYRLRYRLALL	11	Unmodified	_RYRLRYRLALL_					0	0	0		ENST00000593099.5_1_17:33325156-33325826:+|nuORF	ENST00000593099.5_1_17:33325156-33325826:+|nuORF	ENST00000593099.5_1_17:33325156-33325826:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3106689453125	3	498.312288	1491.91504	-6.6799	-0.0033287	2.0726	0.0010328	-4.6073	-0.0022959	498.64747174651427	162.29	0.73099	160.67	160.35	161.09	-1.6239					57	19	4	0	0	0	0.72582	1	16046	16046		3.6191	0.21035	1	42371			52305	14150	43308	43340	56743	56743					0.18875466833128485
RYRPVLRRR	9	Unmodified	_RYRPVLRRR_					0	0	0			REV__CCNF|p.P753Kfs*22|1|0.2|ENSG00000162063|chr16:2456913-2456914|CC/-|frameshift_variant	REV__CCNF|p.P753Kfs*22|1|0.2|ENSG00000162063|chr16:2456913-2456914|CC/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	636.39794921875	2	636.399622	1270.78469	-5.7408	-0.0036534	3.721	0.002368	-2.0198	-0.0012854	636.4018984737235	158.9	0.87512	158.67	158.43	159.3	-0.22696					33	16	3	0	0	0	0.71901	1	16144	16144		11.511	1.2458	1	52250	+		52306	15755	43309	43341	56744	56744					0.160129156247649
RYRPVLRRR	9	Unmodified	_RYRPVLRRR_					0	0	0			REV__CCNF|p.P753Kfs*22|1|0.2|ENSG00000162063|chr16:2456913-2456914|CC/-|frameshift_variant	REV__CCNF|p.P753Kfs*22|1|0.2|ENSG00000162063|chr16:2456913-2456914|CC/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	636.3968505859375	2	636.399622	1270.78469	-6.0266	-0.0038353	4.1298	0.0026282	-1.8968	-0.0012071	636.4021340969482	159.63	1.4705	158.02	157.73	159.2	-1.6101					96	32	4	0	0	0	0.6653	1	15745	15745		24.203	5.9407	1	297970	+		52307	15755	43309	43341	56745	56745					0.160129156247649
RYRRKTGRELG	11	Unmodified	_RYRRKTGRELG_					0	0	0			REV__nc|ENSG00000135476|Q14674-2|ESPL1	REV__nc|ENSG00000135476|Q14674-2|ESPL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.27215576171875	3	464.604131	1390.79056	-0.38754	-0.00018005	2.0071	0.00093249	1.6195	0.00075244	464.60458453838856	21.229	0.43177	19.89	19.737	20.169	-1.3386					12	8	2	0	0	0	0.026364	1	166	166		13.508	7.8092	1	11147	+		52308	19292	43310	43342	56746	56746					0.11079969345792051
RYRSKPRH	8	Unmodified	_RYRSKPRH_					0	0	0		nc|ENSG00000073803|O43283-5|MAP3K13;nc|ENSG00000073803|O43283-4|MAP3K13;ENSG00000073803|ENST00000265026|MAP3K13	nc|ENSG00000073803|O43283-5|MAP3K13	nc|ENSG00000073803|O43283-5|MAP3K13	MULTI-SECPEP	OvCa9_classI_Rep2	2	550.806884765625	2	550.315223	1098.61589	-0.47599	-0.00026195	4.1377	0.002277	3.6617	0.0020151	550.3172167379001	49.335	1.237	46.575	46.078	47.315	-2.7603					38	24	2	0	0	0	0.028476	1	3205	3205		16.473	1.6083	1	52637			52309	1502	43311	43343	56747	56747					0.07053013991276202
RYSPVLSRF	9	Unmodified	_RYSPVLSRF_					0	0	0		ENSG00000166685|ENST00000299886|COG1	ENSG00000166685|ENST00000299886|COG1	ENSG00000166685|ENST00000299886|COG1	MULTI-MSMS	OvCa99_classI_Rep5	1	562.8155517578125	2	562.81419	1123.61383	0.96103	0.00054088	-1.0154	-0.00057147	-0.054353	-3.059E-05	562.8135477006083	72.353	1.7423	72.353	72.086	73.829	0					125	43	6	0	0	0	0.1149	1	7054	7054		93.143	23.516	1	39343000			52310	6701	43312	43344	56748	56748					0.05696540462804478
RYSRKGFLF	9	Unmodified	_RYSRKGFLF_					0	0	0		nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF	nc|ENSG00000196235|O00267-2|SUPT5H	nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-MSMS	OvCa99_classI_Rep5	1	587.332275390625	2	587.330008	1172.64546	0.25085	0.00014733	-0.94238	-0.00055349	-0.69153	-0.00040615	587.3294516842681	63.302	2.4092	63.302	62.976	65.385	0					180	59	6	0	0	0	0.35444	1	5729	5729		56.721	10.749	1	28368000			52311	8581	43313	43345	56749	56749					0.06604533216750497
RYTLQASTF	9	Unmodified	_RYTLQASTF_					0	0	0		ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	ENSG00000055130|ENST00000325222|CUL1	MSMS	OvCa99_classI_Rep5	1	543.7839965820312	2	543.782556	1085.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.275	1	80.275	79.775	80.775	0								0	0	0	0.17298	1	8226	8226		44.377	2.9506	1				52312	1219	43314	43346	56750	56750					0.011205549548776617
RYTTEFHEL	9	Unmodified	_RYTTEFHEL_					0	0	0		ENST00000524549.1_1_11:9597437-9598815:+|nuORF;nc|ENSG00000166483|P30291-2|WEE1;ENSG00000166483|ENST00000450114|WEE1	ENST00000524549.1_1_11:9597437-9598815:+|nuORF	ENST00000524549.1_1_11:9597437-9598815:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	598.2904663085938	2	598.290745	1194.56694	-0.41405	-0.00024772	-0.19355	-0.0001158	-0.6076	-0.00036352	598.2905656062605	65.447	1.1003	65.447	64.995	66.096	0					77	27	5	0	0	0	0.1804	1	5996	5996		79.713	15.505	1	10763000			52313	6686	43315	43347	56751	56751					-0.022563638790188634
RYTVRAKRG	9	Unmodified	_RYTVRAKRG_					0	0	0		ENSG00000163516|ENST00000323348|ANKZF1;ENST00000490526.1_1_2:220097047-220098161:+|nuORF;ENST00000465550.5_1_2:220096537-220099084:+|nuORF;ENST00000461731.5_1_2:220094544-220099084:+|nuORF	ENSG00000163516|ENST00000323348|ANKZF1;ENST00000461731.5_1_2:220094544-220099084:+|nuORF	ENST00000461731.5_1_2:220094544-220099084:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8294677734375	2	553.830706	1105.64686	-0.8401	-0.00046527	-0.49633	-0.00027488	-1.3364	-0.00074015	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.70685	1	14088	14088		15.642	0	1	245610			52314	6319;12183	43316	43348	56752	56752					0.09826167305504896
RYVEIVSQF	9	Unmodified	_RYVEIVSQF_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-MSMS	OvCa99_classI_Rep5	1	570.8078002929688	2	570.806031	1139.59751	1.8641	0.0010641	-0.86297	-0.00049259	1.0011	0.00057146	570.8059294877565	98.523	1.4467	98.523	98.165	99.612	0					73	34	3	0	0	0	0.24899	1	10866	10866		68.846	10.064	1	2588100			52315	889	43317	43349	56753	56753					0.0332941450603812
RYVLHSLQ	8	Unmodified	_RYVLHSLQ_					0	0	0			REV__ENSG00000158480|ENST00000289431|SPATA2	REV__ENSG00000158480|ENST00000289431|SPATA2	MULTI-MSMS	OvCa99_classI_Rep5	1	508.2894592285156	2	508.287808	1014.56106	2.1371	0.0010863	-0.38072	-0.00019352	1.7564	0.00089276	508.28754528324424	85.025	1.2813	85.025	84.631	85.912	0					82	30	4	0	0	0	0.60331	1	8920	8920		63.306	9.9548	1	12167000	+		52316	20567	43318	43350	56754	56754					0.05436582400000134
RYVLHSLQ	8	Unmodified	_RYVLHSLQ_					0	0	0			REV__ENSG00000158480|ENST00000289431|SPATA2	REV__ENSG00000158480|ENST00000289431|SPATA2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	508.287808	1014.56106	-1.1306	-0.00057469	-6.6604	-0.0033854	-7.791	-0.0039601	508.2854628856205	87.46	0.46383	85.283	85.087	85.551	-2.1768	0.12923	-0.0062619	NaN	63.306	20	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19790	+		52317	20567	43318	43350							0.05436582400000134
RYVPVAGLHM	10	Oxidation (M)	_RYVPVAGLHM(Oxidation (M))_		RYVPVAGLHM(1)		RYVPVAGLHM(50)	0	0	1			REV__ENST00000465695.1_1_10:75532330-75533574:+|nuORF	REV__ENST00000465695.1_1_10:75532330-75533574:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	579.8082275390625	2	579.808051	1157.60155	-0.26686	-0.00015473	-3.7604	-0.0021803	-4.0272	-0.002335	579.8058922059781	66.596	2.3143	66.596	66.25	68.564	0					118	57	6	0	0	0	0.53404	1	6228	6228		50.025	10.772	1	47674000	+		52318	22882	43319	43351	56755	56755		531			0.029051807280893627
RYVQQLQRL	9	Unmodified	_RYVQQLQRL_					0	0	0		ENSG00000055950|ENST00000318364|MRPL43;nc|ENSG00000055950|Q8N983-3|MRPL43;nc|ENSG00000055950|Q8N983-2|MRPL43;nc|ENSG00000055950|Q8N983|MRPL43;nc|ENSG00000055950|Q8N983-6|MRPL43;nc|ENSG00000055950|Q8N983-7|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	ENSG00000055950|ENST00000318364|MRPL43	MULTI-MSMS	OvCa99_classI_Rep5	1	602.35302734375	2	602.351471	1202.68839	-0.21299	-0.00012829	-0.21816	-0.00013141	-0.43115	-0.0002597	602.3512534296573	61.31	1.2658	61.31	60.943	62.209	0					62	29	4	0	0	0	0.041116	1	5388	5388		125.81	40.653	1	3906000			52319	1224	43320	43352	56756	56756					0.09515303274179132
RYVWWKKSL	9	Unmodified	_RYVWWKKSL_					0	0	0		ENSG00000151461|ENST00000357604|UPF2	ENSG00000151461|ENST00000357604|UPF2	ENSG00000151461|ENST00000357604|UPF2	MULTI-MSMS	OvCa99_classI_Rep5	1	422.5780334472656	3	422.576631	1264.70806	-0.80625	-0.0003407	0.98133	0.00041469	0.17508	7.3985E-05	422.5769180697683	69.891	0.81657	69.891	69.672	70.488	0					58	19	4	0	0	0	0.3076	1	6664	6664		68.846	23.824	1	3583300			52320	5553	43321	43353	56757	56757					0.08629679284945269
RYYGCWWYR	9	Unmodified	_RYYGCWWYR_					0	0	0			REV__ENST00000602591.1_1_6:30256646-30256907:-|nuORF	REV__ENST00000602591.1_1_6:30256646-30256907:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	451.2664794921875	3	451.537959	1351.59205	-0.30086	-0.00013585	4.4065	0.0019897	4.1057	0.0018539	451.54008268735697	37.829	0.22874	37.829	37.668	37.896	0					8	4	2	0	0	0	0.027462	1	2086	2086		24.519	3.682	1	33578	+		52321	28043	43322	43354	56758	56758					-0.06968587557435058
RYYLKFNFL	9	Unmodified	_RYYLKFNFL_					0	0	0		ENSG00000178695|ENST00000377474|KCTD12	ENSG00000178695|ENST00000377474|KCTD12	ENSG00000178695|ENST00000377474|KCTD12	MULTI-MSMS	OvCa99_classI_Rep5	1	632.3490600585938	2	632.347866	1262.68118	2.0191	0.0012768	0.080019	5.06E-05	2.0991	0.0013274	632.3477818602754	113.81	0.9702	113.81	113.5	114.47	0					57	21	4	0	0	0	0.13482	2	12965	12965;12987		87.754	11.177	1	4467400			52322	7770	43323	43355	56759;56760	56759					0.0603457067375075
SAAELNYGVL	10	Unmodified	_SAAELNYGVL_					0	0	0		ZMYM3|p.L1115Vfs*21|1|0.09|ENSG00000147130|chrX:71243918-71243919|-/TCCCCATCTCACGTTCAAGAAC|frameshift_variant	ZMYM3|p.L1115Vfs*21|1|0.09|ENSG00000147130|chrX:71243918-71243919|-/TCCCCATCTCACGTTCAAGAAC|frameshift_variant	ZMYM3|p.L1115Vfs*21|1|0.09|ENSG00000147130|chrX:71243918-71243919|-/TCCCCATCTCACGTTCAAGAAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.7696533203125	2	518.769114	1035.52368	-0.84698	-0.00043939	0.71291	0.00036984	-0.13407	-6.9553E-05	518.7693309592166	82.441	1.5097	79.758	79.298	80.808	-2.6829					83	30	4	0	0	0	0.48198	1	6838	6838		56.721	8.8055	1	876750			52323	36317	43324	43356	56761	56761					0.007334463437246086
SAALITAILI	10	Unmodified	_SAALITAILI_					0	0	0			REV__tr|A0A553SS13|A0A553SS13_NIACIBranched-chainaminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_02285PE=3SV=1	REV__tr|A0A553SS13|A0A553SS13_NIACIBranched-chainaminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_02285PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	493.3174133300781	2	493.318243	984.621933	1.2328	0.00060816	-1.4512	-0.00071588	-0.21836	-0.00010772	493.3174202897749	124.35	2.0803	123.31	122.97	125.05	-1.0377					98	39	4	0	0	0	0.37918	1	9656	9656		71.296	2.5089	1	770890	+		52324	30789	43325	43357	56762	56762					0.12900674659567812
SAAPELVLPS	10	Unmodified	_SAAPELVLPS_					0	0	0			REV__ENSG00000152217|ENST00000649279|SETBP1	REV__ENSG00000152217|ENST00000649279|SETBP1	MULTI-MSMS	OvCa9_classI_Rep2	2	492.2724914550781	2	492.274032	982.533512	-0.79248	-0.00039012	-2.3896	-0.0011763	-3.1821	-0.0015664	492.27281781556945	38.402	2.3795	35.692	35.32	37.7	-2.7097					117	47	5	0	0	0	0.65434	1	1847	1847		35.618	1.4457	1	1550300	+		52325	20274	43326	43358	56763	56763					0.041546343490949766
SAAPPVKTKF	10	Unmodified	_SAAPPVKTKF_					0	0	0			REV__tr|A0A553STY4|A0A553STY4_NIACIGlucuronylhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05880PE=3SV=1	REV__tr|A0A553STY4|A0A553STY4_NIACIGlucuronylhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05880PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3037109375	2	523.305667	1044.59678	-2.1227	-0.0011108	-1.8084	-0.00094634	-3.9311	-0.0020572	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.73063	1	11544	11544		27.047	5.0874	1	183010	+		52326	31023	43327	43359	56764	56764					0.0762661985700106
SAARQVDQV	9	Unmodified	_SAARQVDQV_					0	0	0			REV__tr|A0A553SQU3|A0A553SQU3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07295PE=4SV=1	REV__tr|A0A553SQU3|A0A553SQU3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07295PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.258544921875	2	487.256705	972.498858	-0.87759	-0.00042761	1.5611	0.00076066	0.68352	0.00033305	487.25712349468836	42.205	1.3938	39.224	38.959	40.352	-2.9804					82	26	5	0	0	0	0.28934	1	1955	1955		64.207	0.67341	1	276190	+		52327	30662	43328	43360	56765	56765					0.011508112609931231
SAARRVRPVSL	11	Unmodified	_SAARRVRPVSL_					0	0	0		ERC1-CACNA1C|23|fusion;ERC1-CACNA1C|37|fusion;ERC1-CACNA1C|9|fusion;ERC1-CACNA1C|18|fusion;ERC1-CACNA1C|11|fusion;ERC1-CACNA1C|17|fusion;ERC1-CACNA1C|14|fusion;ERC1-CACNA1C|35|fusion;ERC1-CACNA1C|33|fusion;ERC1-CACNA1C|39|fusion;ERC1-CACNA1C|25|fusion;ERC1-CACNA1C|5|fusion;ERC1-CACNA1C|43|fusion;ERC1-CACNA1C|38|fusion;ERC1-CACNA1C|44|fusion;ERC1-CACNA1C|45|fusion;ERC1-CACNA1C|31|fusion;ERC1-CACNA1C|32|fusion;ERC1-CACNA1C|40|fusion;ERC1-CACNA1C|30|fusion;ERC1-CACNA1C|34|fusion;ERC1-CACNA1C|36|fusion;ERC1-CACNA1C|41|fusion;ERC1-CACNA1C|8|fusion;ERC1-CACNA1C|22|fusion;ERC1-CACNA1C|19|fusion;ERC1-CACNA1C|46|fusion;ERC1-CACNA1C|6|fusion;ERC1-CACNA1C|3|fusion;ERC1-CACNA1C|1|fusion;ERC1-CACNA1C|4|fusion;ERC1-CACNA1C|42|fusion;ERC1-CACNA1C|13|fusion;ERC1-CACNA1C|29|fusion;ERC1-CACNA1C|12|fusion;ERC1-CACNA1C|2|fusion;ERC1-CACNA1C|10|fusion;ERC1-CACNA1C|16|fusion;ERC1-CACNA1C|20|fusion;ERC1-CACNA1C|26|fusion;ERC1-CACNA1C|21|fusion;ERC1-CACNA1C|15|fusion;ERC1-CACNA1C|24|fusion;ERC1-CACNA1C|27|fusion;ERC1-CACNA1C|7|fusion;ERC1-CACNA1C|28|fusion;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C	ERC1-CACNA1C|23|fusion;nc|ENSG00000151067|Q13936-26|CACNA1C	ERC1-CACNA1C|23|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3685302734375	2	606.370195	1210.72584	-0.26856	-0.00016285	-0.5906	-0.00035812	-0.85916	-0.00052097	606.369699493104	145.24	3.8933	143.8	141.64	145.53	-1.4357					226	74	4	0	0	0	0.70761	1	14129	14129		27.047	7.9438	1	336140			52328	14314;15092	43329	43361	56766	56766					0.12890394539795125
SAASGFHQQLR	11	Unmodified	_SAASGFHQQLR_					0	0	0		KAT6A|p.F1751Lfs*32|1|0.04|ENSG00000083168|chr8:41932967-41932968|-/CATAGGCTGCTGGGTATAGGCCTGGCTCCCC|frameshift_variant;ENSG00000083168|ENST00000265713|KAT6A	KAT6A|p.F1751Lfs*32|1|0.04|ENSG00000083168|chr8:41932967-41932968|-/CATAGGCTGCTGGGTATAGGCCTGGCTCCCC|frameshift_variant	KAT6A|p.F1751Lfs*32|1|0.04|ENSG00000083168|chr8:41932967-41932968|-/CATAGGCTGCTGGGTATAGGCCTGGCTCCCC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.8825378417969	3	401.207266	1200.59997	0.74097	0.00029728	3.3124	0.001329	4.0534	0.0016263	401.2084182830116	52.06	0.42528	52.06	51.788	52.214	0					15	9	2	0	0	0	0.025638	1	4074	4074		21.032	0	1	370570			52329	1688	43330	43362	56767	56767					0.0076926296369492775
SAATTAAVN	9	Unmodified	_SAATTAAVN_					0	0	0			REV__ENST00000469390.5_1_1:156876157-156877908:+|nuORF	REV__ENST00000469390.5_1_1:156876157-156877908:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	403.7391662597656	2	403.20615	804.397747	3.8757	0.0015627	2.6118	0.0010531	6.4875	0.0026158	403.20706694143666	137.41	0.80237	135.87	135.62	136.42	-1.5437					25	16	2	0	0	0	0.027462	1	13351	13351		21.96	0	1	22390	+		52330	24609	43331	43363	56768	56768					-0.012276404417093545
SADEAHGCNTV	11	Carbamidomethyl (C)	_SADEAHGC(Carbamidomethyl (C))NTV_	SADEAHGC(1)NTV		SADEAHGC(56)NTV		0	1	0			REV__nc|ENSG00000168079|Q6ZMJ2-4|SCARA5	REV__nc|ENSG00000168079|Q6ZMJ2-4|SCARA5	MULTI-MSMS	OvCa99_classI_Rep5	1	580.737060546875	2	580.735477	1159.4564	0.36936	0.0002145	2.2501	0.0013067	2.6194	0.0015212	580.7365197901213	158.89	1.5514	158.89	158.61	160.16	0					62	31	4	0	0	0	0.4646	1	18628	18628		56.434	12.057	1	413170	+		52331	21345	43332	43364	56769	56769	238				-0.11694951929553099
SAEQHQRTL	9	Unmodified	_SAEQHQRTL_					0	0	0		ENST00000393321.2_3_2:109102933-109106471:+|nuORF;ENSG00000135968|ENST00000309863|GCC2	ENST00000393321.2_3_2:109102933-109106471:+|nuORF	ENST00000393321.2_3_2:109102933-109106471:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	535.2727661132812	2	535.272887	1068.53122	-0.77475	-0.0004147	0.73768	0.00039486	-0.037075	-1.9845E-05	535.2733027644675	28.365	0.39836	28.365	28.14	28.539	0					17	7	3	0	0	0	0.64127	1	925	925		27.047	1.4733	1	127540			52332	4440	43333	43365	56770	56770					-0.0003040133599370165
SAFPEVRSL	9	Unmodified	_SAFPEVRSL_					0	0	0		nc|ENSG00000115970|Q6YHU6-3|THADA;THADA|p.R1942Ifs*6|1|0.05|ENSG00000115970|chr2:43230985-43230986|-/CTGGGGGA|frameshift_variant;ENSG00000115970|ENST00000405975|THADA;nc|ENSG00000115970|Q6YHU6-2|THADA;nc|ENSG00000115970|Q6YHU6-4|THADA;ENST00000485018.1_1_2:43519181-43520149:-|nuORF	nc|ENSG00000115970|Q6YHU6-3|THADA	nc|ENSG00000115970|Q6YHU6-3|THADA	MSMS	OvCa99_classI_Rep5	1	503.27313232421875	2	503.271824	1004.5291	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.864	1	90.864	90.364	91.364	0								0	0	0	0.16747	1	9763	9763		58.246	6.9108	1				52333	3144	43334	43366	56771	56771					0.027011699261947797
SAGPLHLLAL	10	Unmodified	_SAGPLHLLAL_					0	0	0		ENST00000589225.5_1_17:76793370-76793733:-|nuORF	ENST00000589225.5_1_17:76793370-76793733:-|nuORF	ENST00000589225.5_1_17:76793370-76793733:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	496.2998962402344	2	496.300384	990.586216	-0.35919	-0.00017827	0.21743	0.00010791	-0.14176	-7.0356E-05	496.30031555631194	121.97	1.1373	121.75	121.47	122.61	-0.21803					58	22	4	0	0	0	0.71192	1	11791	11791		29.15	0	1	202890			52334	14085	43335	43367	56772	56772					0.0905463720255284
SAGPWSLH	8	Unmodified	_SAGPWSLH_					0	0	0		ENST00000445028.1_1_X:43137608-43138196:-|nuORF	ENST00000445028.1_1_X:43137608-43138196:-|nuORF	ENST00000445028.1_1_X:43137608-43138196:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	428.2696533203125	2	427.711402	853.408252	0.48925	0.00020926	4.2926	0.001836	4.7819	0.0020453	427.7129488779334	57.441	0.56097	54.097	53.934	54.495	-3.3449					13	10	2	0	0	0	0.028476	1	3724	3724		19.36	0	1	12864			52335	11969	43336	43368	56773	56773					-0.024316129966223343
SAGVPLLLL	9	Unmodified	_SAGVPLLLL_					0	0	0		ENST00000480553.1_1_21:47959692-47966956:+|nuORF	ENST00000480553.1_1_21:47959692-47966956:+|nuORF	ENST00000480553.1_1_21:47959692-47966956:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	441.247314453125	2	441.786579	881.558604	0.88601	0.00039143	2.2276	0.00098414	3.1136	0.0013756	441.78741551095385	61.982	0.67579	61.982	61.743	62.418	0					47	15	5	0	0	0	0.027462	1	5498	5498		18.324	14.339	1	1598900			52336	12533	43337	43369	56774	56774					0.11308733942325944
SAGVPLLLL	9	Unmodified	_SAGVPLLLL_					0	0	0		ENST00000480553.1_1_21:47959692-47966956:+|nuORF	ENST00000480553.1_1_21:47959692-47966956:+|nuORF	ENST00000480553.1_1_21:47959692-47966956:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	441.786579	881.558604	-1.0261	-0.0004533	3.9619	0.0017503	2.9359	0.001297	441.78822257367193	65.749	1.6562	62.264	61.84	63.496	-3.4854	0.06481	0.0015386	NaN	18.324	83	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	467330			52337	12533	43337	43369							0.11308733942325944
SAGWHVPR	8	Unmodified	_SAGWHVPR_					0	0	0		ENST00000484394.5_1_X:152720163-152720565:-|nuORF	ENST00000484394.5_1_X:152720163-152720565:-|nuORF	ENST00000484394.5_1_X:152720163-152720565:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	454.24871826171875	2	455.238119	908.461684	-0.46216	-0.00021039	-1.5701	-0.00071475	-2.0322	-0.00092514	455.23728038058607	73.675	0.67149	70.279	69.979	70.65	-3.3961					28	13	3	0	0	0	0.028476	1	5750	5750		17.365	0	1	68563			52338	12599	43338	43370	56775	56775					0.003791845059026855
SAHDQSLVL	9	Unmodified	_SAHDQSLVL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	485.25543212890625	2	485.253631	968.49271	-0.011053	-5.3637E-06	0.53231	0.00025831	0.52126	0.00025294	485.25395734397983	70.974	1.3119	70.974	70.565	71.877	0					82	32	4	0	0	0	0.22621	1	6827	6827		71.877	5.98	1	14362000			52339	6293	43339	43371	56776	56776					0.007202930294738508
SAHTHTLSL	9	Unmodified	_SAHTHTLSL_					0	0	0		LAMB2|p.A1715Sfs*4|1|0.69|ENSG00000172037|chr3:49121550-49121551|-/T|frameshift_variant;ENSG00000172037|ENST00000305544|LAMB2;ENST00000469665.1_1_3:49160507-49161165:-|nuORF	LAMB2|p.A1715Sfs*4|1|0.69|ENSG00000172037|chr3:49121550-49121551|-/T|frameshift_variant	LAMB2|p.A1715Sfs*4|1|0.69|ENSG00000172037|chr3:49121550-49121551|-/T|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	483.7536926269531	2	483.753798	965.493044	0.33644	0.00016275	-0.89339	-0.00043218	-0.55695	-0.00026943	483.7531373952316	46.043	0.83095	46.043	45.8	46.631	0					42	18	3	0	0	0	0.12365	1	3223	3223		90.777	2.1338	1	1754600			52340	7262	43340	43372	56777	56777					0.008917127493305088
SAIDRIFTL	9	Unmodified	_SAIDRIFTL_					0	0	0		ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	ENSG00000183576|ENST00000331768|SETD3	MULTI-MSMS	OvCa99_classI_Rep5	1	518.297119140625	2	518.295299	1034.57605	0.65927	0.0003417	2.4985	0.0012949	3.1577	0.0016366	518.2965651970186	123.84	0.54667	123.84	123.37	123.92	0					25	11	3	0	0	0	0.24899	1	14277	14277		68.846	10.064	1	929670			52341	8086	43341	43373	56778	56778					0.060140294773418645
SAIFNFQSL	9	Unmodified	_SAIFNFQSL_					0	0	0		ENSG00000174695|ENST00000502346|TMEM167A	ENSG00000174695|ENST00000502346|TMEM167A	ENSG00000174695|ENST00000502346|TMEM167A	MULTI-MSMS	OvCa99_classI_Rep5	1	513.7681884765625	2	513.766374	1025.5182	0.85275	0.00043811	1.3909	0.00071458	2.2436	0.0011527	513.7669659244302	142.45	0.93381	142.45	142.14	143.07	0					37	18	4	0	0	0	0.084918	1	16644	16644		101.25	2.6232	1	184430			52342	7482	43342	43374	56779	56779					0.0064576755189591495
SAIGRAMEL	9	Unmodified	_SAIGRAMEL_					0	0	0		nc|ENSG00000196914|Q9NZN5-2|ARHGEF12;ENSG00000196914|ENST00000397843|ARHGEF12;ENST00000529970.5_1_11:120278459-120348246:+|nuORF;ARHGEF12|p.S634Lfs*6|1|0.03|ENSG00000196914|chr11:120451564-120451565|-/C|frameshift_variant	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	nc|ENSG00000196914|Q9NZN5-2|ARHGEF12	MULTI-MSMS	OvCa99_classI_Rep5	1	474.25482177734375	2	474.252577	946.490601	2.4908	0.0011813	-0.57236	-0.00027144	1.9185	0.00090984	474.25223049541603	80.205	0.67106	80.205	79.944	80.615	0					37	15	3	0	0	0	0.35694	1	8212	8212		56.434	5.0983	1	1462100			52343	8658	43343	43375	56780	56780					0.015215410200198676
SAIKLNTSKQ	10	Unmodified	_SAIKLNTSKQ_					0	0	0		ENSG00000110756|ENST00000349215|HPS5;nc|ENSG00000110756|Q9UPZ3-2|HPS5;HPS5|p.N371Kfs*31|1|0.09|ENSG00000110756|chr11:18298843-18298844|-/ACCCCCAAAAACTGCAGTAATTT|frameshift_variant	ENSG00000110756|ENST00000349215|HPS5	ENSG00000110756|ENST00000349215|HPS5	MULTI-MSMS	OvCa9_classI_Rep2	2	545.316650390625	2	545.316763	1088.61897	-1.7047	-0.0009296	1.3026	0.00071033	-0.40209	-0.00021926	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.74374	1	14399	14399		25.574	0	1	202430			52344	2793	43344	43376	56781	56781					0.07820799534761136
SAIPIHSLL	9	Unmodified	_SAIPIHSLL_					0	0	0			REV__tr|A0A553SIC9|A0A553SIC9_NIACIRNAhelicaseOS=NialliacirculansOX=1397GN=CEQ21_14640PE=4SV=1	REV__tr|A0A553SIC9|A0A553SIC9_NIACIRNAhelicaseOS=NialliacirculansOX=1397GN=CEQ21_14640PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	475.78594970703125	2	475.78711	949.559667	-1.1284	-0.0005369	1.2052	0.00057342	0.07677	3.6526E-05	475.7874490810867	140.15	0.93607	139.11	138.74	139.68	-1.0339					36	18	3	0	0	0	0.6653	1	11565	11565		24.203	2.5004	1	94016	+		52345	29882	43345	43377	56782	56782					0.08286948311251763
SAIQTKTW	8	Unmodified	_SAIQTKTW_					0	0	0			REV__ENST00000582301.5_1_9:22063975-22077773:+|nuORF	REV__ENST00000582301.5_1_9:22063975-22077773:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	467.7509765625	2	467.753267	933.491981	-0.63706	-0.00029799	-0.37975	-0.00017763	-1.0168	-0.00047562	467.7529129286559	39.817	0.80977	39.817	39.669	40.479	0					47	17	4	0	0	0	0.65062	1	2363	2363		53.351	5.6941	1	4993800	+		52346	27828	43346	43378	56783	56783					0.022574983804247495
SAKFRKTWTIL	11	Unmodified	_SAKFRKTWTIL_					0	0	0			REV__nc|ENSG00000156515|P19367-4|HK1	REV__nc|ENSG00000156515|P19367-4|HK1	MULTI-MSMS	OvCa9_classI_Rep3	3	450.9366455078125	3	450.934595	1349.78196	1.6146	0.00072808	3.5249	0.0015895	5.1395	0.0023176	450.9360997934693	63.19	1.2421	60.156	59.756	60.998	-3.0339					70	24	4	0	0	0	0.72069	1	2336	2336		22.562	2.2466	1	192240	+		52347	20485	43347	43379	56784	56784					0.12105602656606607
SAKKSKTT	8	Unmodified	_SAKKSKTT_					0	0	0			REV__L1MA6_dup4553|chr14:32965001-32966588:+|1.0811544242595916|0.0860524180403581|3.65|423.0|38|3|sense	REV__L1MA6_dup4553|chr14:32965001-32966588:+|1.0811544242595916|0.0860524180403581|3.65|423.0|38|3|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	425.753662109375	2	425.753267	849.491981	0.82002	0.00034913	-2.5603	-0.00109	-1.7403	-0.00074092	425.7523366828019	141.23	1.0913	139.77	139.25	140.34	-1.4627					35	20	3	0	0	0	0.73734	1	13789	13789		10.866	4.9445	1	66986	+		52348	28399	43348	43380	56785	56785					0.06121498380423418
SAKKTPVPWRL	11	Unmodified	_SAKKTPVPWRL_					0	0	0		nc|ENSG00000109794|A5PLN7-2|FAM149A;ENST00000515078.5_1_4:187070333-187088439:+|nuORF;nc|ENSG00000109794|A5PLN7-4|FAM149A;ENSG00000109794|ENST00000706927|FAM149A;nc|ENSG00000109794|A5PLN7|FAM149A	nc|ENSG00000109794|A5PLN7-2|FAM149A	nc|ENSG00000109794|A5PLN7-2|FAM149A	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8829345703125	2	641.885147	1281.75574	-4.0037	-0.0025699	-0.45506	-0.00029209	-4.4587	-0.002862	642.3862707583961	149.94	3.9275	149.71	147.52	151.45	-0.22696					225	78	5	0	0	0	0.7046	1	15178	15178		28.081	0.19925	1	222110			52349	2736	43349	43381	56786	56786					0.12613333485114708
SALGAAGFSAL	11	Unmodified	_SALGAAGFSAL_					0	0	0		tr|A0A7D6ZFI3|A0A7D6ZFI3_9CLOTThreonine/serineexporterfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15030PE=3SV=1	tr|A0A7D6ZFI3|A0A7D6ZFI3_9CLOTThreonine/serineexporterfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15030PE=3SV=1	tr|A0A7D6ZFI3|A0A7D6ZFI3_9CLOTThreonine/serineexporterfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15030PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	482.7598876953125	2	482.758549	963.502546	2.1392	0.0010327	1.1547	0.00055742	3.2938	0.0015901	482.7588804234167	57.803	3.1186	54.676	53.456	56.575	-3.1264					158	85	3	0	0	0	0.58572	1	1725	1725		45.972	4.5456	1	89902			52350	35510	43350	43382	56787	56787					0.019334810348709652
SALGYLHSL	9	Unmodified	_SALGYLHSL_					0	0	0		ENSG00000118515|ENST00000367858|SGK1;nc|ENSG00000118515|O00141-5|SGK1;nc|ENSG00000118515|O00141-3|SGK1;nc|ENSG00000118515|O00141|SGK1;nc|ENSG00000118515|O00141-4|SGK1;ENST00000367855.7_1_6:134492115-134495951:-|nuORF;ENST00000477460.6_1_6:134491408-134493948:-|nuORF;ENST00000474427.6_1_6:134493798-134493948:-|nuORF;ENST00000524764.1_1_6:134493798-134494280:-|nuORF	ENSG00000118515|ENST00000367858|SGK1	ENSG00000118515|ENST00000367858|SGK1	MULTI-MSMS	OvCa99_classI_Rep5	1	480.7623291015625	2	480.761092	959.507631	1.5225	0.00073196	0.9822	0.00047221	2.5047	0.0012042	480.7614076150972	91.193	0.84793	91.193	90.777	91.625	0					49	20	4	0	0	0	0.036687	1	9811	9811		129.68	0	1	4757100			52351	3313	43351	43383	56788	56788					0.026257848974864828
SALHAVHL	8	Unmodified	_SALHAVHL_					0	0	0		ENSG00000143867|ENST00000272223|OSR1	ENSG00000143867|ENST00000272223|OSR1	ENSG00000143867|ENST00000272223|OSR1	MULTI-MSMS	OvCa99_classI_Rep5	1	424.2445068359375	2	424.24287	846.471186	-0.1021	-4.3317E-05	4.4809	0.001901	4.3788	0.0018577	424.244635230288	23.804	0.23931	23.804	23.697	23.937	0					8	4	2	0	0	0	0.75991	1	376	376		21.702	0	1	29769			52352	5102	43352	43384	56789	56789					0.041809527914210776
SALLHAPALGI	11	Unmodified	_SALLHAPALGI_					0	0	0			REV__ENST00000292599.3_1_5:179201954-179202125:+|nuORF	REV__ENST00000292599.3_1_5:179201954-179202125:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8170776367188	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.69081	1	11545	11545		32.812	3.6424	1	178650	+		52353	24163	43353	43385	56790	56790					0.09498308748334239
SALPPHLGPI	10	Unmodified	_SALPPHLGPI_					0	0	0			REV__ENST00000370351.8_1_20:61599273-61599456:+|nuORF	REV__ENST00000370351.8_1_20:61599273-61599456:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2919921875	2	501.292559	1000.57057	-1.4695	-0.00073667	-2.6975	-0.0013522	-4.167	-0.0020889	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.76627	1	11306	11306		23.042	0	1	97838	+		52354	24959	43354	43386	56791	56791					0.07030350685522535
SALPPLGALHL	11	Unmodified	_SALPPLGALHL_					0	0	0		ENST00000534294.5_1_11:118085588-118095705:-|nuORF;ENST00000526620.5_1_11:118083254-118095711:-|nuORF	ENST00000534294.5_1_11:118085588-118095705:-|nuORF	ENST00000534294.5_1_11:118085588-118095705:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	544.8240356445312	2	544.826766	1087.63898	-5.7876	-0.0031532	1.5349	0.00083624	-4.2527	-0.002317	544.8275981477423	155.03	0.91966	153.96	153.65	154.57	-1.073					57	22	4	0	0	0	0.68684	1	13328	13328		34.173	2.6427	1	91973			52355	13221	43355	43387	56792	56792					0.09866595265384603
SALVKFIEALS	11	Unmodified	_SALVKFIEALS_					0	0	0			REV__ENSG00000197147|ENST00000330947|LRRC8B	REV__ENSG00000197147|ENST00000330947|LRRC8B	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3425903320312	2	589.344989	1176.67542	-3.0463	-0.0017953	-0.38122	-0.00022467	-3.4276	-0.00202	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.71498	1	14860	14860		24.519	0	1	272220	+		52356	22897	43356	43388	56793	56793					0.09415427371436635
SAMKAVTEL	9	Unmodified	_SAMKAVTEL_					0	0	0		ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	OvCa99_classI_Rep5	1	475.2562561035156	2	475.254785	948.495018	0.6409	0.00030459	-0.86903	-0.00041301	-0.22813	-0.00010842	475.2543245362163	72.145	1.3193	72.145	71.916	73.235	0					62	32	4	0	0	0	0.010478	2	7001	7001;7030		167.23	50.325	1	13294000			52357	3868	43357	43389	56794;56795	56794					0.018710054429107004
SANLKHSLTKL	11	Unmodified	_SANLKHSLTKL_					0	0	0			REV__nc|ENSG00000149970|Q8WXI2-5|CNKSR2	REV__nc|ENSG00000149970|Q8WXI2-5|CNKSR2	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3584594726562	2	606.358962	1210.70337	-1.2135	-0.0007358	0.68645	0.00041624	-0.52703	-0.00031957	606.3593251444516	103.62	1.436	103.05	102.73	104.17	-0.57639					74	28	4	0	0	0	0.1228	1	9577	9577		65.465	0	1	529590	+		52358	20180	43358	43390	56796	56796					0.10644750351502807
SAPRPVGNER	10	Unmodified	_SAPRPVGNER_					0	0	0			REV__ENST00000496153.5_1_7:73097936-73098104:+|nuORF	REV__ENST00000496153.5_1_7:73097936-73098104:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.8049926757812	2	541.788704	1081.56285	0.066705	3.614E-05	1.0656	0.00057732	1.1323	0.00061346	541.7895380918433	33.249	0.49607	30.553	30.402	30.898	-2.6954					15	9	2	0	0	0	0.026681	1	868	868		62.107	19.711	1	24914	+		52359	26754	43359	43391	56797	56797					0.025335914179549945
SAPWYEQLI	9	Unmodified	_SAPWYEQLI_					0	0	0			REV__chr3:39408724-39410898|89|776.13|0.42|10.86|+|2|RPSA,None|1	REV__chr3:39408724-39410898|89|776.13|0.42|10.86|+|2|RPSA,None|1	MULTI-SECPEP	OvCa9_classI_Rep3	3	554.34716796875	2	553.779482	1105.54441	-0.27766	-0.00015376	-3.2121	-0.0017788	-3.4897	-0.0019325	553.7775095336908	114.32	1.0069	113.26	112.84	113.85	-1.055					42	19	4	0	0	0	0.027462	1	8450	8450		10.866	0	1	58089	+		52360	16046	43360	43392	56798	56798					-0.004139632766282375
SAQIVVLTGFV	11	Unmodified	_SAQIVVLTGFV_					0	0	0		ENSG00000154258|ENST00000340001|ABCA9;nc|ENSG00000154258|Q8IUA7-4|ABCA9;nc|ENSG00000154258|Q8IUA7-3|ABCA9;ENST00000461623.1_1_17:67029858-67045457:-|nuORF;ABCA9|p.F408Tfs*10|1|0.06|ENSG00000154258|chr17:69033780-69033781|-/GT|frameshift_variant	ENSG00000154258|ENST00000340001|ABCA9	ENSG00000154258|ENST00000340001|ABCA9	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3294677734375	2	567.331882	1132.64921	-2.3399	-0.0013275	-1.3687	-0.0007765	-3.7086	-0.002104	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.71498	1	14577	14577		24.519	0	1	241060			52361	5723	43361	43393	56799	56799					0.08819158199935373
SAQTAKVGRL	10	Unmodified	_SAQTAKVGRL_					0	0	0			REV__ENSG00000109805|ENST00000251496|NCAPG	REV__ENSG00000109805|ENST00000251496|NCAPG	MULTI-MSMS	OvCa9_classI_Rep2	2	515.805908203125	2	515.803823	1029.59309	-0.17166	-8.8541E-05	4.0527	0.0020904	3.8811	0.0020019	515.8057522410776	136.15	1.0273	135.92	135.57	136.6	-0.22696					51	20	4	0	0	0	0.762	1	13560	13560		23.523	1.5628	1	147900	+		52362	17953	43362	43394	56800	56800					0.07947950083143951
SARAAPAAL	9	Unmodified	_SARAAPAAL_					0	0	0			REV__ENSG00000185442|ENST00000327355|FAM174B	REV__ENSG00000185442|ENST00000327355|FAM174B	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.24102783203125	2	414.240327	826.466101	-1.8669	-0.00077335	1.5975	0.00066174	-0.26943	-0.00011161	414.24085037835687	49.362	0.82973	46.22	45.99	46.82	-3.1416					33	15	3	0	0	0	0.40667	1	2783	2783		51.335	1.8939	1	230910	+		52363	22503	43363	43395	56801	56801					0.04592648928780818
SARAAPAAL	9	Unmodified	_SARAAPAAL_					0	0	0			REV__ENSG00000185442|ENST00000327355|FAM174B	REV__ENSG00000185442|ENST00000327355|FAM174B	MULTI-MATCH	OvCa99_classI_Rep5	1		2	414.240327	826.466101	1.0447	0.00043274	-1.8257	-0.00075628	-0.78104	-0.00032354	414.2399202808985	46.192	0.2137	46.192	46.112	46.326	0	-0.078241	-0.0021518	NaN	51.335	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83314	+		52364	22503	43363	43395							0.04592648928780818
SARAAPAAL	9	Unmodified	_SARAAPAAL_					0	0	0			REV__ENSG00000185442|ENST00000327355|FAM174B	REV__ENSG00000185442|ENST00000327355|FAM174B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	414.240327	826.466101	-0.17808	-7.3768E-05	0.33694	0.00013957	0.15886	6.5805E-05	414.24029574804837	49.16	0.74074	46.399	46.078	46.819	-2.7603	0.12863	-0.00036007	NaN	51.335	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45415	+		52365	22503	43363	43395							0.04592648928780818
SARAAPAAL	9	Unmodified	_SARAAPAAL_					0	0	0			REV__ENSG00000185442|ENST00000327355|FAM174B	REV__ENSG00000185442|ENST00000327355|FAM174B	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	414.240327	826.466101	-1.8669	-0.00077335	1.5975	0.00066174	-0.26943	-0.00011161	414.24085037835687	49.362	0.82973	46.22	45.99	46.82	-3.1416	-0.050384	0.00068426	NaN	51.335	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230910	+		52366	22503	43363	43395							0.04592648928780818
SARLKQLL	8	Unmodified	_SARLKQLL_					0	0	0			REV__nc|ENSG00000123485|Q8NCD3-3|HJURP	REV__nc|ENSG00000123485|Q8NCD3-3|HJURP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.76806640625	2	464.800552	927.58655	-0.84676	-0.00039357	0.75282	0.00034991	-0.093936	-4.3661E-05	464.8007418729022	48.481	0.36024	45.374	45.244	45.604	-3.1077					9	6	2	0	0	0	0.028476	1	2693	2693		37.159	8.0096	1	22782	+		52367	18644	43364	43396	56802	56802					0.11986056922410171
SARRKILSS	9	Unmodified	_SARRKILSS_					0	0	0			REV__ENST00000399036.3_1_3:46448868-46449565:+|nuORF	REV__ENST00000399036.3_1_3:46448868-46449565:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.31109619140625	2	509.311815	1016.60908	-2.7879	-0.0014199	2.4916	0.001269	-0.29628	-0.0001509	509.3129934375174	149.78	1.2073	148.35	147.97	149.18	-1.4344					57	23	4	0	0	0	0.69123	1	14784	14784		20.947	1.587	1	218320	+		52368	25386	43365	43397	56803	56803					0.10143656320042282
SARRKILSS	9	Unmodified	_SARRKILSS_					0	0	0			REV__ENST00000399036.3_1_3:46448868-46449565:+|nuORF	REV__ENST00000399036.3_1_3:46448868-46449565:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	509.311815	1016.60908	-4.4673	-0.0022752	3.9072	0.00199	-0.5601	-0.00028527	509.3137732266256	149.37	0.95456	148.42	148.15	149.11	-0.95119	0.034224	0.00062759	NaN	20.947	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88792	+		52369	25386	43365	43397							0.10143656320042282
SARRKILSS	9	Unmodified	_SARRKILSS_					0	0	0			REV__ENST00000399036.3_1_3:46448868-46449565:+|nuORF	REV__ENST00000399036.3_1_3:46448868-46449565:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	509.311815	1016.60908	-2.7879	-0.0014199	2.4916	0.001269	-0.29628	-0.0001509	509.3129934375174	149.78	1.2073	148.35	147.97	149.18	-1.4344	-0.034224	-0.00081432	NaN	20.947	57	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218320	+		52370	25386	43365	43397							0.10143656320042282
SASAARLAPL	10	Unmodified	_SASAARLAPL_					0	0	0		ENST00000269593.4_1_17:38599756-38599807:+|nuORF	ENST00000269593.4_1_17:38599756-38599807:+|nuORF	ENST00000269593.4_1_17:38599756-38599807:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	478.77850341796875	2	478.779816	955.545079	-0.62041	-0.00029704	-0.49203	-0.00023558	-1.1124	-0.00053261	478.77933923625665	74.056	2.9189	72.085	71.378	74.297	-1.9711					156	55	6	0	0	0	0.22511	7	6034	6010;6016;6034;6039;6045;6057;6063		90.601	23.053	1	2474400			52371	9987	43366	43398	56804;56805;56806;56807;56808;56809;56810	56806					0.06552876163061683
SASAARLAPL	10	Unmodified	_SASAARLAPL_					0	0	0		ENST00000269593.4_1_17:38599756-38599807:+|nuORF	ENST00000269593.4_1_17:38599756-38599807:+|nuORF	ENST00000269593.4_1_17:38599756-38599807:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.77978515625	2	478.779816	955.545079	0.15186	7.2709E-05	-2.3367	-0.0011188	-2.1849	-0.0010461	478.77859349645075	75.028	2.9296	71.797	71.289	74.218	-3.2308					117	60	4	0	0	0	0.22511	1	5905	5905		90.601	10.888	1	7866200			52372	9987	43366	43398	56811	56811					0.06552876163061683
SASAAYNIEN	10	Unmodified	_SASAAYNIEN_					0	0	0		tr|A0A7D6ZWX4|A0A7D6ZWX4_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20845PE=3SV=1	tr|A0A7D6ZWX4|A0A7D6ZWX4_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20845PE=3SV=1	tr|A0A7D6ZWX4|A0A7D6ZWX4_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20845PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.84228515625	2	520.238178	1038.4618	-0.87405	-0.00045472	1.2012	0.00062489	0.3271	0.00017017	520.7373465774701	104.07	0.62999	101.95	101.75	102.38	-2.1192					22	11	3	0	0	0	0.026577	1	9441	9441		27.047	0	1	23749			52373	35858	43367	43399	56812	56812					-0.05588905075433104
SASDPAGELRA	11	Unmodified	_SASDPAGELRA_					0	0	0		ENST00000517804.5_1_8:21914623-21924620:+|nuORF	ENST00000517804.5_1_8:21914623-21924620:+|nuORF	ENST00000517804.5_1_8:21914623-21924620:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.2657470703125	2	537.264727	1072.5149	-2.4457	-0.001314	1.7166	0.00092226	-0.72916	-0.00039175	537.2655410604852	107.23	1.55	105.36	105.01	106.56	-1.8785					70	30	4	0	0	0	0.63561	1	9784	9784		41.427	5.8083	1	684190			52374	13063	43368	43400	56813	56813					-0.018455272927667465
SASGQQPAASR	11	Unmodified	_SASGQQPAASR_					0	0	0		ENSG00000078687|ENST00000696270|TNRC6C;nc|ENSG00000078687|Q9HCJ0-4|TNRC6C	ENSG00000078687|ENST00000696270|TNRC6C	ENSG00000078687|ENST00000696270|TNRC6C	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.2802124023438	2	530.262519	1058.51048	1.2756	0.00067642	-2.1204	-0.0011244	-0.84473	-0.00044793	530.2611925893931	119.49	0.94994	119.49	119.01	119.96	0					50	22	3	0	0	0	0.025656	1	13669	13669		32.751	10.791	1	383860			52375	1598	43369	43401	56814	56814					-0.016429917156756346
SASHELVIL	9	Unmodified	_SASHELVIL_					0	0	0		ENSG00000197410|ENST00000357232|DCHS2	ENSG00000197410|ENST00000357232|DCHS2	ENSG00000197410|ENST00000357232|DCHS2	MULTI-MSMS	OvCa99_classI_Rep5	1	484.777587890625	2	484.7742	967.533846	0.70962	0.00034401	1.1057	0.00053603	1.8154	0.00088004	484.7746131407354	152.11	0.81026	152.11	151.74	152.55	0					44	17	4	0	0	0	0.46377	1	17792	17792		45.952	1.8352	1	585070			52376	8709	43370	43402	56815	56815					0.04878054068944948
SASHVAEI	8	Unmodified	_SASHVAEI_					0	0	0		ENST00000391788.6_1_19:52905223-52909266:+|nuORF	ENST00000391788.6_1_19:52905223-52909266:+|nuORF	ENST00000391788.6_1_19:52905223-52909266:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	408.1912841796875	2	407.208692	812.402832	1.4331	0.00058357	-2.4629	-0.0010029	-1.0298	-0.00041936	407.2075682675537	56.98	0.66101	53.635	53.324	53.985	-3.3449					16	12	2	0	0	0	0.028476	1	3659	3659		7.6903	0	1	12146			52377	11206	43371	43403	56816	56816					-0.01087336579098519
SASPSLPTLV	10	Unmodified	_SASPSLPTLV_					0	0	0			REV__ENSG00000153339|ENST00000283351|TRAPPC8	REV__ENSG00000153339|ENST00000283351|TRAPPC8	MULTI-MSMS	OvCa99_classI_Rep5	1	486.2772521972656	2	486.274032	970.533512	-0.27817	-0.00013527	0.66329	0.00032254	0.38512	0.00018727	486.2740574582155	51.488	0.37866	51.488	51.248	51.627	0					19	8	3	0	0	0	0.52321	1	3980	3980		51.335	0	1	1303600	+		52378	20338	43372	43404	56817	56817					0.04706634349099659
SASSLRTQPN	10	Unmodified	_SASSLRTQPN_					0	0	0		nc|ENSG00000165115|Q86VH2-3|KIF27;nc|ENSG00000165115|Q86VH2-2|KIF27;ENSG00000165115|ENST00000297814|KIF27	nc|ENSG00000165115|Q86VH2-3|KIF27	nc|ENSG00000165115|Q86VH2-3|KIF27	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.795166015625	2	530.772719	1059.53089	-0.48105	-0.00025533	0.63411	0.00033657	0.15306	8.1239E-05	530.7729777077751	41.481	0.43876	41.481	41.285	41.724	0					23	9	3	0	0	0	0.026577	1	2599	2599		49.536	0	1	691700			52379	6522	43373	43405	56818	56818					0.003501789441543224
SASVLVAIIL	10	Unmodified	_SASVLVAIIL_					0	0	0			REV__ENSG00000147378|ENST00000370350|FATE1	REV__ENSG00000147378|ENST00000370350|FATE1	MULTI-MSMS	OvCa9_classI_Rep3	3	493.3170471191406	2	493.318243	984.621933	1.2328	0.00060816	-1.4512	-0.00071588	-0.21836	-0.00010772	493.3174202897749	124.35	2.0803	123.31	122.97	125.05	-1.0377					98	39	4	0	0	0	0.28791	1	9642	9642		82.305	0	1	770890	+		52380	20059	43374	43406	56819	56819					0.12900674659567812
SATAPLSTVTL	11	Unmodified	_SATAPLSTVTL_					0	0	0			REV__nc|ENSG00000170322|Q6P4R8-3|NFRKB;REV__ENST00000532147.1_1_11:129742643-129743711:-|nuORF	REV__nc|ENSG00000170322|Q6P4R8-3|NFRKB	MULTI-MSMS	OvCa99_classI_Rep5	1	531.2992553710938	2	530.797872	1059.58119	1.0037	0.00053278	-1.569	-0.00083282	-0.56525	-0.00030003	531.2984766971392	123.82	1.1848	123.82	123.47	124.65	0					57	25	3	0	0	0	0.60323	1	14300	14300		44.377	5.571	1	398510	+		52381	21531;27229	43375	43407	56820	56820					0.05378288549309218
SATGTEQLVL	10	Unmodified	_SATGTEQLVL_					0	0	0			REV__ENSG00000188770|ENST00000367222|OPTC	REV__ENSG00000188770|ENST00000367222|OPTC	MULTI-MSMS	OvCa9_classI_Rep2	2	509.7706298828125	2	509.774396	1017.53424	-0.59788	-0.00030478	0.85128	0.00043396	0.2534	0.00012918	509.7747144375885	59.693	1.5135	56.916	56.192	57.706	-2.7772					69	28	4	0	0	0	0.28422	1	4375	4375		82.75	2.8113	1	218210	+		52382	22735	43376	43408	56821	56821					0.026174289981327092
SATLGLGIEI	10	Unmodified	_SATLGLGIEI_					0	0	0		tr|A0A7D6VSD0|A0A7D6VSD0_9CLOTHistidinol-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_05935PE=3SV=1	tr|A0A7D6VSD0|A0A7D6VSD0_9CLOTHistidinol-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_05935PE=3SV=1	tr|A0A7D6VSD0|A0A7D6VSD0_9CLOTHistidinol-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_05935PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	487.28204345703125	2	487.281857	972.549162	0.41655	0.00020298	-1.4122	-0.00068813	-0.99564	-0.00048516	487.28120490509764	96.794	4.5464	95.835	95.182	99.728	-0.95857					234	91	6	0	0	0	0.027703	2	8721	8721;8739		138.83	23.931	1	7137300			52383	35015	43377	43409	56822;56823	56822					0.061789208661252815
SATLGLGIEI	10	Unmodified	_SATLGLGIEI_					0	0	0		tr|A0A7D6VSD0|A0A7D6VSD0_9CLOTHistidinol-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_05935PE=3SV=1	tr|A0A7D6VSD0|A0A7D6VSD0_9CLOTHistidinol-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_05935PE=3SV=1	tr|A0A7D6VSD0|A0A7D6VSD0_9CLOTHistidinol-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_05935PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	487.282470703125	2	487.281857	972.549162	-0.97507	-0.00047514	-0.017053	-8.3098E-06	-0.99213	-0.00048345	487.28188680194495	97.554	2.9535	95.794	95.362	98.316	-1.7595					206	57	6	0	0	0	0.05881	3	6460	6451;6460;6526		125.81	10.919	1	11571000			52384	35015	43377	43409	56824;56825;56826	56825					0.061789208661252815
SATLGLGIEI	10	Unmodified	_SATLGLGIEI_					0	0	0		tr|A0A7D6VSD0|A0A7D6VSD0_9CLOTHistidinol-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_05935PE=3SV=1	tr|A0A7D6VSD0|A0A7D6VSD0_9CLOTHistidinol-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_05935PE=3SV=1	tr|A0A7D6VSD0|A0A7D6VSD0_9CLOTHistidinol-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_05935PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.28326416015625	2	487.281857	972.549162	0.31716	0.00015454	-1.3078	-0.00063728	-0.99067	-0.00048274	487.2812648001119	98.127	3.3235	95.748	95.216	98.54	-2.3786					197	64	5	0	0	0	0.019828	3	8744	8744;8756;8819		148.04	21.8	1	10553000			52385	35015	43377	43409	56827;56828;56829	56827					0.061789208661252815
SATRPQQTSDL	11	Unmodified	_SATRPQQTSDL_					0	0	0		nc|ENSG00000123485|Q8NCD3-3|HJURP;nc|ENSG00000123485|Q8NCD3-2|HJURP;ENSG00000123485|ENST00000411486|HJURP	nc|ENSG00000123485|Q8NCD3-3|HJURP	nc|ENSG00000123485|Q8NCD3-3|HJURP	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.2230224609375	3	401.87032	1202.58913	1.0119	0.00040666	2.6091	0.0010485	3.621	0.0014552	401.8713674294464	29.545	0.549	29.545	29.186	29.735	0					16	10	2	0	0	0	0.025418	1	1060	1060		23.514	14.715	1	46819			52386	3598	43378	43410	56830	56830					-0.004061842012333727
SAVDFIRTL	9	Unmodified	_SAVDFIRTL_					0	0	0		ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	ENSG00000164543|ENST00000319357|STK17A	MULTI-MSMS	OvCa99_classI_Rep5	1	511.28875732421875	2	511.287474	1020.5604	2.2014	0.0011255	0.10012	5.119E-05	2.3015	0.0011767	511.28738580557757	116.43	0.76545	116.43	116.14	116.91	0					44	16	4	0	0	0	0.033166	2	13328	13305;13328		132.76	43.551	1	2699700			52387	6465	43379	43411	56831;56832	56832					0.050937429602981865
SAVEPKTAL	9	Unmodified	_SAVEPKTAL_					0	0	0		ENSG00000136153|ENST00000377534|LMO7;ENST00000563635.5_1_13:76195947-76378681:+|nuORF;nc|ENSG00000136153|Q8WWI1-5|LMO7;nc|ENSG00000136153|Q8WWI1-3|LMO7;nc|ENSG00000136153|Q8WWI1-4|LMO7;nc|ENSG00000136153|Q8WWI1-2|LMO7;nc|ENSG00000136153|Q8WWI1|LMO7	ENSG00000136153|ENST00000377534|LMO7;nc|ENSG00000136153|Q8WWI1-3|LMO7	nc|ENSG00000136153|Q8WWI1-3|LMO7	MULTI-MSMS	OvCa99_classI_Rep5	1	458.26239013671875	2	458.260925	914.507297	0.038497	1.7642E-05	0.01519	6.9612E-06	0.053687	2.4603E-05	458.26078582598575	56.765	1.5975	56.765	56.22	57.818	0					69	37	4	0	0	0	0.070405	1	4722	4722		107.01	2.261	1	5095500			52388	4464;15035	43380	43412	56833	56833					0.04662365177614447
SAVEYAQSQL	10	Unmodified	_SAVEYAQSQL_					0	0	0		ENST00000548316.1_1_12:41903559-41967689:+|nuORF;nc|ENSG00000165966|Q6ZMN7-4|PDZRN4;nc|ENSG00000165966|Q6ZMN7-2|PDZRN4;ENSG00000165966|ENST00000402685|PDZRN4	ENST00000548316.1_1_12:41903559-41967689:+|nuORF	ENST00000548316.1_1_12:41903559-41967689:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	548.2711791992188	2	548.269478	1094.5244	1.0493	0.00057533	1.361	0.00074618	2.4103	0.0013215	548.2701661184642	90.835	1.2902	90.835	90.504	91.794	0					59	31	2	0	0	0	0.39718	1	9812	9812		68.846	0	1	9499600			52389	6621	43381	43413	56834	56834					-0.019077590072356543
SAVGKKVL	8	Unmodified	_SAVGKKVL_					0	0	0		ENST00000492979.2_1_7:76019335-76019617:-|nuORF	ENST00000492979.2_1_7:76019335-76019617:-|nuORF	ENST00000492979.2_1_7:76019335-76019617:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	401.26214599609375	2	401.263271	800.511988	-0.21441	-8.6037E-05	-2.9352	-0.0011778	-3.1496	-0.0012638	401.26203375308216	137.05	1.2653	135.96	135.51	136.78	-1.0858					61	25	3	0	0	0	0.73417	1	11169	11169		9.4706	0	1	224680			52390	12732	43382	43414	56835	56835					0.10375294111042876
SAVIRRSVAVH	11	Unmodified	_SAVIRRSVAVH_					0	0	0		ENST00000513490.1_1_5:32100951-32108238:+|nuORF;ENST00000515115.5_1_5:32098703-32108238:+|nuORF	ENST00000513490.1_1_5:32100951-32108238:+|nuORF	ENST00000513490.1_1_5:32100951-32108238:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8568115234375	2	597.856921	1193.69929	-1.5377	-0.00091935	0.67572	0.00040398	-0.86202	-0.00051536	597.8570606153338	148.28	4.8676	146.85	145.38	150.25	-1.435					291	102	5	0	0	0	0.7046	1	14607	14607		28.081	6.1216	1	767860			52391	13014	43383	43415	56836	56836					0.11018705648439209
SAVKEGTAM	9	Oxidation (M)	_SAVKEGTAM(Oxidation (M))_		SAVKEGTAM(1)		SAVKEGTAM(85)	0	0	1		ENSG00000122870|ENST00000373886|BICC1;BICC1|p.P501Hfs*18|1|0.41|ENSG00000122870|chr10:58798530-58798530|C/-|frameshift_variant;BICC1|p.S698Qfs*2|1|0.07|ENSG00000122870|chr10:58803152-58803153|-/C|frameshift_variant;nc|ENSG00000122870|Q9H694-2|BICC1	ENSG00000122870|ENST00000373886|BICC1	ENSG00000122870|ENST00000373886|BICC1	MULTI-MSMS	OvCa99_classI_Rep5	1	455.22113037109375	2	455.220943	908.427332	-0.72051	-0.00032799	0.92529	0.00042121	0.20478	9.322E-05	455.22120163168125	27.297	2.3457	27.297	26.892	29.237	0					74	46	2	0	0	0	0.14998	1	798	798		84.916	18.486	1	151150			52392	3562	43384	43416	56837	56837		111			-0.030544444878728427
SAVKEGTAM	9	Unmodified	_SAVKEGTAM_					0	0	0		ENSG00000122870|ENST00000373886|BICC1;BICC1|p.P501Hfs*18|1|0.41|ENSG00000122870|chr10:58798530-58798530|C/-|frameshift_variant;BICC1|p.S698Qfs*2|1|0.07|ENSG00000122870|chr10:58803152-58803153|-/C|frameshift_variant;nc|ENSG00000122870|Q9H694-2|BICC1	ENSG00000122870|ENST00000373886|BICC1	ENSG00000122870|ENST00000373886|BICC1	MULTI-MSMS	OvCa99_classI_Rep5	1	447.224365234375	2	447.223485	892.432418	-0.22997	-0.00010285	0.16887	7.5524E-05	-0.061097	-2.7324E-05	447.2234610951952	37.136	1.0112	37.136	36.84	37.851	0					52	21	4	0	0	0	0.2422	2	2002	2002;2026		69.628	5.4204	1	1629400			52393	3562	43384	43417	56838;56839	56838					-0.018101406252640118
SAVKVINHVD	10	Unmodified	_SAVKVINHVD_					0	0	0		tr|A0A553SIL5|A0A553SIL5_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15090PE=4SV=1	tr|A0A553SIL5|A0A553SIL5_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15090PE=4SV=1	tr|A0A553SIL5|A0A553SIL5_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15090PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.856689453125	2	541.303655	1080.59276	-0.41335	-0.00022375	2.5183	0.0013632	2.1049	0.0011394	541.304703839784	48.543	0.34636	48.543	48.372	48.718	0					9	7	2	0	0	0	0.026522	1	3570	3570		85.161	11.186	1	74278			52394	33395	43385	43418	56840	56840					0.05568530363279933
SAVSQSKEL	9	Unmodified	_SAVSQSKEL_					0	0	0		nc|ENSG00000136603|P12757-3|SKIL;nc|ENSG00000136603|P12757-5|SKIL;ENSG00000136603|ENST00000259119|SKIL;ENST00000490894.1_1_3:170102333-170102591:+|nuORF	nc|ENSG00000136603|P12757-3|SKIL	nc|ENSG00000136603|P12757-3|SKIL	MULTI-MSMS	OvCa99_classI_Rep5	1	474.75250244140625	2	474.753464	947.492375	-0.1643	-7.8003E-05	-0.004366	-2.0728E-06	-0.16867	-8.0076E-05	474.75344138994825	40.743	0.8516	40.743	40.479	41.33	0					41	18	4	0	0	0	0.2077	1	2498	2498		75.043	10.836	1	849920			52395	4500	43386	43419	56841	56841					0.01652873309626557
SAVVLTLILAA	11	Unmodified	_SAVVLTLILAA_					0	0	0		ENSG00000164742|ENST00000297323|ADCY1	ENSG00000164742|ENST00000297323|ADCY1	ENSG00000164742|ENST00000297323|ADCY1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.279052734375	2	535.844625	1069.6747	1.1621	0.00062269	-3.6305	-0.0019454	-2.4684	-0.0013227	536.3458587415114	143.17	0.24112	143.17	142.98	143.22	0					6	4	2	0	0	0	0.026099	1	16720	16720		26.693	11.051	1	11242			52396	6482	43387	43420	56842	56842					0.14264632722370152
SAWDNGTD	8	Unmodified	_SAWDNGTD_					0	0	0			REV__ENST00000591330.5_1_17:40855746-40879722:-|nuORF	REV__ENST00000591330.5_1_17:40855746-40879722:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1720886230469	2	433.169764	864.324976	2.6506	0.0011482	1.0551	0.00045706	3.7058	0.0016052	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.70469	1	1991	1991		42.396	6.7778	1	60065	+		52397	17903	43388	43421	56843	56843					-0.11261394235145872
SAWKCLWGLL	10	Unmodified	_SAWKCLWGLL_					0	0	0		ENST00000434603.2_1_11:75316186-75316648:-|nuORF	ENST00000434603.2_1_11:75316186-75316648:-|nuORF	ENST00000434603.2_1_11:75316186-75316648:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	588.8158569335938	2	588.815344	1175.61614	0.80845	0.00047603	1.2371	0.0007284	2.0455	0.0012044	588.8159508434318	128.23	0.78979	128.01	127.74	128.53	-0.22696					46	15	4	0	0	0	0.3976	1	12562	12562		68.787	3.3214	1	167000			52398	11847	43389	43422	56844	56844					0.0353525287625871
SAYEPKARPE	10	Unmodified	_SAYEPKARPE_					0	0	0			REV__tr|A0A553SG51|A0A553SG51_NIACIsmall,acid-solublesporeproteinKOS=NialliacirculansOX=1397GN=CEQ21_10225PE=4SV=1	REV__tr|A0A553SG51|A0A553SG51_NIACIsmall,acid-solublesporeproteinKOS=NialliacirculansOX=1397GN=CEQ21_10225PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	574.2906494140625	2	574.290745	1146.56694	2.2976	0.0013195	-3.2518	-0.0018675	-0.95422	-0.000548	574.2887813624243	26.093	0.82673	23.383	23.246	24.073	-2.7097					33	20	3	0	0	0	0.84374	1	319	319		13.454	0	1	76649	+		52399	29661	43390	43423	56845	56845					-0.00048363879000135057
SCAPGESTN	9	Unmodified	_SCAPGESTN_					0	0	0			REV__ENSG00000133055|ENST00000255416|MYBPH	REV__ENSG00000133055|ENST00000255416|MYBPH	MULTI-SECPEP	OvCa9_classI_Rep2	2	432.7323303222656	2	433.17145	864.328346	-0.86855	-0.00037623	2.115	0.00091615	1.2464	0.00053992	433.1722821055841	55.866	16.119	53.062	46.034	62.154	-2.804					415	318	2	0	0	0	0.027432	1	3673	3673		27.047	0	1	59161	+		52400	19121	43391	43424	56846	56846					-0.10924467452798581
SCCHCSLL	8	Unmodified	_SCCHCSLL_					0	0	0			REV__ENST00000216039.9_1_22:39083550-39083643:-|nuORF	REV__ENST00000216039.9_1_22:39083550-39083643:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	433.17138671875	2	433.171884	864.329215	1.9505	0.00084491	-1.8497	-0.00080124	0.10081	4.3668E-05	433.17100760562903	63.152	4.2639	60.118	58.202	62.466	-3.0339					141	92	2	0	0	0	0.74971	1	2321	2321		26.796	2.5934	1	38128	+		52401	23715	43392	43425	56847	56847					-0.10837667609075652
SCCIGVHM	8	Oxidation (M)	_SCCIGVHM(Oxidation (M))_		SCCIGVHM(1)		SCCIGVHM(41)	0	0	1		ENST00000369046.8_1_6:107097010-107100239:+|nuORF	ENST00000369046.8_1_6:107097010-107100239:+|nuORF	ENST00000369046.8_1_6:107097010-107100239:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	433.17156982421875	2	433.171884	864.329215	2.6506	0.0011482	-3.8381	-0.0016626	-1.1875	-0.00051439	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.71055	1	1717	1717		41.208	15.634	1	60065			52402	10890	43393	43426	56848	56848		306			-0.10837667609075652
SCDSAAPSQ	9	Unmodified	_SCDSAAPSQ_					0	0	0			REV__ENSG00000151929|ENST00000369085|BAG3	REV__ENSG00000151929|ENST00000369085|BAG3	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1719970703125	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.5811	1	1686	1686		34.173	7.4796	1	60065	+		52403	20263	43394	43427	56849	56849					-0.10924467452787212
SCESSGPAQ	9	Unmodified	_SCESSGPAQ_					0	0	0			REV__GPR179|p.W1960Cfs*10|1|0.96|ENSG00000277399|chr17:38327664-38327689|CGGAATCTGCTGGGGCAGTGGTCTCC/-|frameshift_variant	REV__GPR179|p.W1960Cfs*10|1|0.96|ENSG00000277399|chr17:38327664-38327689|CGGAATCTGCTGGGGCAGTGGTCTCC/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	433.17144775390625	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.31747	11	1646	1515;1537;1554;1646;1672;1759;1782;1804;1917;2046;2117		60.972	20.399	1	60065	+		52404	23632	43395	43428	56850;56851;56852;56853;56854;56855;56856;56857;56858;56859;56860	56853					-0.10924467452775843
SCESSGPAQ	9	Unmodified	_SCESSGPAQ_					0	0	0			REV__GPR179|p.W1960Cfs*10|1|0.96|ENSG00000277399|chr17:38327664-38327689|CGGAATCTGCTGGGGCAGTGGTCTCC/-|frameshift_variant	REV__GPR179|p.W1960Cfs*10|1|0.96|ENSG00000277399|chr17:38327664-38327689|CGGAATCTGCTGGGGCAGTGGTCTCC/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	433.17144775390625	2	433.17145	864.328346	1.9505	0.00084491	-0.84733	-0.00036704	1.1032	0.00047787	433.17100760562903	63.152	4.2639	60.118	58.202	62.466	-3.0339					141	92	2	0	0	0	0.5811	1	2391	2391		34.173	1.3601	1	38128	+		52405	23632	43395	43428	56861	56861					-0.10924467452775843
SCFLCRVQ	8	Unmodified	_SCFLCRVQ_					0	0	0			REV__ENST00000482792.1_1_10:24880396-24883959:-|nuORF	REV__ENST00000482792.1_1_10:24880396-24883959:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.24188232421875	2	478.228048	954.441542	0.58069	0.0002777	-2.0458	-0.00097835	-1.4651	-0.00070065	478.22685862233595	66.803	0.15703	66.803	66.7	66.857	0					5	3	2	0	0	0	0.028476	1	6208	6208		37.159	0	1	109190	+		52406	26510	43396	43429	56862	56862					-0.03750070540570505
SCGGGGGGG	9	Unmodified	_SCGGGGGGG_					0	0	0			REV__ENSG00000241973|ENST00000255882|PI4KA	REV__ENSG00000241973|ENST00000255882|PI4KA	MULTI-SECPEP	OvCa9_classI_Rep2	2	608.8360595703125	1	608.2093	607.202024	-3.717	-0.0022607	0.056096	3.4118E-05	-3.6609	-0.0022266	608.2117297491666	150.5	2.6105	150.27	149.32	151.93	-0.22696					82	52	2	0	0	0	0.027462	1	15406	15406		12.959	5.2689	1	15170	+		52407	23452	43397	43430	56863	56863					-0.11728929167406932
SCGGICDKGIF	11	Unmodified	_SCGGICDKGIF_					0	0	0			REV__ENST00000423261.1_1_20:36231307-36231394:-|nuORF	REV__ENST00000423261.1_1_20:36231307-36231394:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.298828125	2	550.249177	1098.4838	0.91723	0.00050471	-0.66287	-0.00036475	0.25436	0.00013996	550.7515900798217	132.69	0.23996	132.69	132.56	132.8	0					6	4	2	0	0	0	0.025418	1	15406	15406		47.96	8.938	1	37103	+		52408	21757	43398	43431	56864	56864					-0.06150139922874587
SCGGREVLAI	10	Unmodified	_SCGGREVLAI_					0	0	0			REV__ENSG00000135617|ENST00000258083|PRADC1	REV__ENSG00000135617|ENST00000258083|PRADC1	MULTI-MSMS	OvCa9_classI_Rep3	3	502.762939453125	2	502.763309	1003.51206	1.2962	0.00065166	-1.3666	-0.00068706	-0.070404	-3.5396E-05	502.76247959947113	61.457	2.958	58.389	57.803	60.761	-3.0685					131	69	3	0	0	0	0.6349	1	2153	2153		37.812	2.6595	1	112640	+		52409	19304	43399	43432	56865	56865					0.010449260487234824
SCGLCMVVCPV	11	Unmodified	_SCGLCMVVCPV_					0	0	0		tr|A0A7D6VXS4|A0A7D6VXS4_9CLOTEpoxyqueuosinereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08165PE=4SV=1	tr|A0A7D6VXS4|A0A7D6VXS4_9CLOTEpoxyqueuosinereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08165PE=4SV=1	tr|A0A7D6VXS4|A0A7D6VXS4_9CLOTEpoxyqueuosinereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08165PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.8464965820312	2	555.744359	1109.47416	1.1393	0.00063317	-1.6321	-0.00090703	-0.49279	-0.00027386	555.7432165583301	110.78	1.2099	109.18	108.91	110.12	-1.6011					37	22	3	0	0	0	0.025853	1	10278	10278		27.882	6.9353	1	36918			52410	35299	43400	43433	56866	56866					-0.07619367524262088
SCGLCMVVCPV	11	Unmodified	_SCGLCMVVCPV_					0	0	0		tr|A0A7D6VXS4|A0A7D6VXS4_9CLOTEpoxyqueuosinereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08165PE=4SV=1	tr|A0A7D6VXS4|A0A7D6VXS4_9CLOTEpoxyqueuosinereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08165PE=4SV=1	tr|A0A7D6VXS4|A0A7D6VXS4_9CLOTEpoxyqueuosinereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08165PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	555.744359	1109.47416	1.3738	0.0007635	-0.1151	-6.3963E-05	1.2587	0.00069954	555.7442570730832	109.46	0.39787	109.46	109.28	109.68	0	0.15766	0.001323	NaN	27.882	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	107090			52411	35299	43400	43433							-0.07619367524262088
SCGLCMVVCPV	11	Unmodified	_SCGLCMVVCPV_					0	0	0		tr|A0A7D6VXS4|A0A7D6VXS4_9CLOTEpoxyqueuosinereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08165PE=4SV=1	tr|A0A7D6VXS4|A0A7D6VXS4_9CLOTEpoxyqueuosinereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08165PE=4SV=1	tr|A0A7D6VXS4|A0A7D6VXS4_9CLOTEpoxyqueuosinereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08165PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	555.744359	1109.47416	0.75224	0.00041805	-1.5803	-0.00087823	-0.82803	-0.00046017	555.7432658917904	109.58	1.0879	109.41	109.12	110.2	-0.17236	0.10794	-0.00030555	NaN	27.882	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26422			52412	35299	43400	43433							-0.07619367524262088
SCGLCMVVCPV	11	Unmodified	_SCGLCMVVCPV_					0	0	0		tr|A0A7D6VXS4|A0A7D6VXS4_9CLOTEpoxyqueuosinereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08165PE=4SV=1	tr|A0A7D6VXS4|A0A7D6VXS4_9CLOTEpoxyqueuosinereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08165PE=4SV=1	tr|A0A7D6VXS4|A0A7D6VXS4_9CLOTEpoxyqueuosinereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08165PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	555.744359	1109.47416	-0.13601	-7.5586E-05	-0.95274	-0.00052948	-1.0887	-0.00060506	555.7436877341603	110.3	1.2452	109.16	108.72	109.96	-1.1444	-0.1435	0.00039194	NaN	27.882	29	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33275			52413	35299	43400	43433							-0.07619367524262088
SCHATCFP	8	Unmodified	_SCHATCFP_					0	0	0			REV__L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|110|1|anti-sense	REV__L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|110|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	433.17144775390625	2	433.170198	864.325844	2.6506	0.0011482	0.052767	2.2857E-05	2.7034	0.001171	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.73626	2	1749	1749;2042		33.516	1.5607	1	60065	+		52414	28393	43401	43434	56867;56868	56867					-0.11174594391434312
SCICVCTH	8	Unmodified	_SCICVCTH_					0	0	0		ENST00000531976.1_1_11:1490730-1491405:-|nuORF	ENST00000531976.1_1_11:1490730-1491405:-|nuORF	ENST00000531976.1_1_11:1490730-1491405:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	433.17181396484375	2	433.171884	864.329215	2.6506	0.0011482	-3.8381	-0.0016626	-1.1875	-0.00051439	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.73626	3	1499	1371;1499;1808		33.516	7.7521	1	60065			52415	13318	43402	43435	56869;56870;56871	56870					-0.10837667609098389
SCKQQVHNLL	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SCKQQVHNLL_					1	0	0			REV__nc|ENSG00000060749|Q2KHR3|QSER1	REV__nc|ENSG00000060749|Q2KHR3|QSER1	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3150634765625	2	606.313697	1210.61284	-0.36546	-0.00022158	0.62825	0.00038091	0.26279	0.00015933	606.313846558734	100.21	4.8548	97.886	97.315	102.17	-2.3253					183	94	4	0	0	0	0.6104	1	8975	8975		40.778	6.6056	1	584000	+		52416	16742	43403	43436	56872	56872					0.015959580315893618
SCLGEQND	8	Unmodified	_SCLGEQND_					0	0	0			REV__tr|A0A553SFQ1|A0A553SFQ1_NIACIDUF2777domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09295PE=4SV=1	REV__tr|A0A553SFQ1|A0A553SFQ1_NIACIDUF2777domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09295PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1718444824219	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.74229	1	1974	1974		30.504	2.6214	1	60065	+		52417	29603	43404	43437	56873	56873					-0.10924467452787212
SCMRKGTHLLV	11	Unmodified	_SCMRKGTHLLV_					0	0	0		ENSG00000167612|ENST00000301190|ANKRD33	ENSG00000167612|ENST00000301190|ANKRD33	ENSG00000167612|ENST00000301190|ANKRD33	MULTI-MSMS	OvCa9_classI_Rep2	2	415.5597839355469	3	415.558254	1243.65293	0.31344	0.00013025	2.9377	0.0012208	3.2511	0.001351	415.5593358589487	32.147	1.7881	29.437	29.085	30.873	-2.7097					72	35	4	0	0	0	0.69735	1	1014	1014		30.569	7.9892	1	86562			52418	6813	43405	43438	56874	56874					0.0408518143051424
SCPDQTTN	8	Unmodified	_SCPDQTTN_					0	0	0			REV__ENST00000503404.5_1_4:159156589-159156658:+|nuORF	REV__ENST00000503404.5_1_4:159156589-159156658:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	433.17144775390625	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.73205	1	1562	1562		35.618	2.1027	1	60065	+		52419	20945	43406	43439	56875	56875					-0.10924467452798581
SCPGQSGET	9	Unmodified	_SCPGQSGET_					0	0	0		ENST00000353548.10_1_12:122692786-122692909:-|nuORF	ENST00000353548.10_1_12:122692786-122692909:-|nuORF	ENST00000353548.10_1_12:122692786-122692909:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1717834472656	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.50149	1	1509	1509		42.396	3.3746	1	60065			52420	10656	43407	43440	56876	56876					-0.10924467452787212
SCQRLFMVL	9	Oxidation (M)	_SCQRLFM(Oxidation (M))VL_		SCQRLFM(1)VL		SCQRLFM(48)VL	0	0	1		ENST00000473911.1_1_9:139890098-139890974:-|nuORF;ENST00000480181.1_1_9:139889560-139890188:-|nuORF;ENSG00000169583|ENST00000494426|CLIC3	ENST00000473911.1_1_9:139890098-139890974:-|nuORF	ENST00000473911.1_1_9:139890098-139890974:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	556.7826538085938	2	556.783187	1111.55182	0.103	5.7349E-05	0.4003	0.00022288	0.5033	0.00028023	556.7833361106095	22.771	0.67963	22.771	22.617	23.297	0					38	14	4	0	0	0	0.44294	1	244	244		47.916	8.6628	1	956040			52421	7021	43408	43441	56877	56877		217			0.0005072972778634721
SCSESPAAN	9	Unmodified	_SCSESPAAN_					0	0	0		ENSG00000253293|ENST00000283921|HOXA10	ENSG00000253293|ENST00000283921|HOXA10	ENSG00000253293|ENST00000283921|HOXA10	MULTI-MSMS	OvCa9_classI_Rep3	3	433.17041015625	2	433.17145	864.328346	1.9505	0.00084491	-0.84733	-0.00036704	1.1032	0.00047787	433.17100760562903	63.152	4.2639	60.118	58.202	62.466	-3.0339					141	92	2	0	0	0	0.62352	1	2212	2212		29.15	2.3535	1	38128			52422	9427	43409	43442	56878	56878					-0.10924467452787212
SCSQEQPS	8	Unmodified	_SCSQEQPS_					0	0	0		ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	ENSG00000137501|ENST00000359152|SYTL2	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1719970703125	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.72896	1	1568	1568		37.159	0	1	60065			52423	4592	43410	43443	56879	56879					-0.10924467452775843
SCSTKKIFTI	10	Unmodified	_SCSTKKIFTI_					0	0	0			REV__CON__Q1A7A4	REV__CON__Q1A7A4	MULTI-MSMS	OvCa9_classI_Rep2	2	564.308349609375	2	564.310092	1126.60563	-0.64093	-0.00036169	-2.6	-0.0014672	-3.2409	-0.0018289	564.3086346308005	121.22	1.0377	121.03	120.61	121.64	-0.19718					60	20	5	0	0	0	0.62299	1	11728	11728		39.253	0.44669	1	328140	+	+	52424	16201	43411	43444	56880	56880					0.0473922543117169
SCTDHTTT	8	Unmodified	_SCTDHTTT_					0	0	0			REV__FAM193A|p.T577Cfs*75|1|0.32|ENSG00000125386|chr4:2690768-2690769|-/TGTGCAGGCTGTTGCACTGCGCC|frameshift_variant	REV__FAM193A|p.T577Cfs*75|1|0.32|ENSG00000125386|chr4:2690768-2690769|-/TGTGCAGGCTGTTGCACTGCGCC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	433.17138671875	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.66704	18	1274	1274;1333;1385;1427;1459;1490;1504;1519;1547;1558;1585;1596;1617;1669;1779;1796;1883;2078		50.025	10.069	1	60065	+		52425	18722	43412	43445	56881;56882;56883;56884;56885;56886;56887;56888;56889;56890;56891;56892;56893;56894;56895;56896;56897;56898	56881					-0.10924467452787212
SCTDHTTT	8	Unmodified	_SCTDHTTT_					0	0	0			REV__FAM193A|p.T577Cfs*75|1|0.32|ENSG00000125386|chr4:2690768-2690769|-/TGTGCAGGCTGTTGCACTGCGCC|frameshift_variant	REV__FAM193A|p.T577Cfs*75|1|0.32|ENSG00000125386|chr4:2690768-2690769|-/TGTGCAGGCTGTTGCACTGCGCC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	433.17218017578125	2	433.17145	864.328346	1.9505	0.00084491	-0.84733	-0.00036704	1.1032	0.00047787	433.17100760562903	63.152	4.2639	60.118	58.202	62.466	-3.0339					141	92	2	0	0	0	0.64026	1	2129	2129		55.504	9.532	1	38128	+		52426	18722	43412	43445	56899	56899					-0.10924467452787212
SCTGGTGADP	10	Unmodified	_SCTGGTGADP_					0	0	0			REV__ENST00000588286.1_1_19:36036058-36036391:-|nuORF	REV__ENST00000588286.1_1_19:36036058-36036391:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1723327636719	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.6104	4	1465	1321;1465;1485;1682		40.778	8.8233	1	60065	+		52427	27886	43413	43446	56900;56901;56902;56903	56901					-0.10924467452787212
SCTQAGDSP	9	Unmodified	_SCTQAGDSP_					0	0	0		ENST00000404056.1_1_22:24177016-24177280:-|nuORF	ENST00000404056.1_1_22:24177016-24177280:-|nuORF	ENST00000404056.1_1_22:24177016-24177280:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1711120605469	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.51865	2	1331	1331;1711		40.778	11.629	1	60065			52428	11448	43414	43447	56904;56905	56904					-0.10924467452787212
SCVKLVRG	8	Unmodified	_SCVKLVRG_					0	0	0			REV__ENST00000595601.1_1_19:17651040-17654446:+|nuORF	REV__ENST00000595601.1_1_19:17651040-17654446:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	432.23553466796875	2	431.25238	860.490207	-0.75218	-0.00032438	0.38554	0.00016627	-0.36664	-0.00015811	431.2524894778228	34.775	0.32497	34.775	34.632	34.957	0					8	6	2	0	0	0	0.028476	1	1699	1699		12.207	0	1	10600	+		52429	27989	43415	43448	56906	56906					0.05438166090834784
SCVVFIWFAF	10	Unmodified	_SCVVFIWFAF_					0	0	0			REV__tr|A0A553SPV1|A0A553SPV1_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_10400PE=4SV=1	REV__tr|A0A553SPV1|A0A553SPV1_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_10400PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	407.2178039550781	3	406.872056	1217.59434	1.0286	0.00041852	0.74961	0.000305	1.7783	0.00072352	406.8724852171368	104.86	0.51039	102.74	102.59	103.1	-2.1192					12	9	2	0	0	0	0.027177	1	9497	9497		1.8869	0	1	10332	+		52430	30573	43416	43449	56907	56907					-0.005755518723390196
SDAKRRRMFL	10	Unmodified	_SDAKRRRMFL_					0	0	0			REV__nc|ENSG00000186575|P35240-10|NF2	REV__nc|ENSG00000186575|P35240-10|NF2	MULTI-MSMS	OvCa99_classI_Rep5	1	427.2451171875	3	427.239913	1278.69791	-0.057886	-2.4731E-05	0.33609	0.00014359	0.27821	0.00011886	427.2399971634606	47.494	1.8194	47.494	47.076	48.895	0					113	41	5	0	0	0	0.61634	1	3452	3452		40.058	3.7405	1	6261900	+		52431	22600	43417	43450	56908	56908					0.06970748288063078
SDAVICVHQNN	11	Unmodified	_SDAVICVHQNN_					0	0	0			REV__sp|P16846|UL23_HCMVATegumentproteinUL23OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL23PE=1SV=2	REV__sp|P16846|UL23_HCMVATegumentproteinUL23OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL23PE=1SV=2	MULTI-MSMS	OvCa99_classI_Rep5	1	600.2754516601562	2	600.277312	1198.54007	1.1829	0.00071005	-2.0958	-0.0012581	-0.91296	-0.00054803	600.2765428078965	142.64	1.0356	142.64	141.98	143.02	0					37	20	3	0	0	0	0.68399	1	16662	16662		35.152	0.97948	1	105700	+		52432	29403	43418	43451	56909	56909					-0.05125795761819063
SDDGDNFF	8	Unmodified	_SDDGDNFF_					0	0	0		ENSG00000167981|ENST00000301744|ZNF597	ENSG00000167981|ENST00000301744|ZNF597	ENSG00000167981|ENST00000301744|ZNF597	MULTI-MSMS	OvCa99_classI_Rep5	1	458.67156982421875	2	458.669597	915.324641	2.4022	0.0011018	1.0106	0.00046354	3.4128	0.0015653	458.6698818931046	100.51	1.0371	100.51	100.24	101.27	0					48	24	3	0	0	0	0.71369	1	11150	11150		40.573	0	1	2007400			52433	6857	43419	43452	56910	56910					-0.13640813954987152
SDEAQNNGL	9	Unmodified	_SDEAQNNGL_					0	0	0		ENSG00000016602|ENST00000370563|CLCA4;nc|ENSG00000016602|Q14CN2-2|CLCA4	ENSG00000016602|ENST00000370563|CLCA4	ENSG00000016602|ENST00000370563|CLCA4	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.7427673339844	2	474.206878	946.399203	-0.25833	-0.0001225	0.1446	6.8573E-05	-0.11372	-5.3928E-05	474.2068508148378	40.596	0.36765	40.596	40.386	40.754	0					12	7	2	0	0	0	0.027343	1	2449	2449		68.787	38.283	1	73052			52434	1007	43420	43453	56911	56911					-0.07614051143605138
SDEGRKYPEL	10	Unmodified	_SDEGRKYPEL_					0	0	0		nc|ENSG00000290894|Q96TA0|PCDHB18P	nc|ENSG00000290894|Q96TA0|PCDHB18P	nc|ENSG00000290894|Q96TA0|PCDHB18P	MULTI-SECPEP	OvCa9_classI_Rep3	3	597.829833984375	2	597.293485	1192.57242	1.1809	0.00070536	1.7027	0.001017	2.8836	0.0017224	597.2945360397496	108.06	0.77319	106.86	106.64	107.41	-1.1978					23	14	2	0	0	0	0.026665	1	7693	7693		51.335	0	1	36827			52435	15397	43421	43454	56912	56912					-0.016166850871968563
SDEPTRPQPI	10	Unmodified	_SDEPTRPQPI_					0	0	0		ENST00000436106.3_1_19:1473254-1473380:-|nuORF	ENST00000436106.3_1_19:1473254-1473380:-|nuORF	ENST00000436106.3_1_19:1473254-1473380:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.2738037109375	2	570.288202	1138.56185	-0.44245	-0.00025233	-0.67785	-0.00038657	-1.1203	-0.00063889	570.2876714396923	49.094	1.0917	49.094	48.544	49.635	0					39	24	3	0	0	0	0.026915	1	3716	3716		35.618	1.4457	1	585470			52436	11872	43422	43455	56913	56913					-0.0018866774159960187
SDGESHSF	8	Unmodified	_SDGESHSF_					0	0	0			REV__nc|ENSG00000182463|Q9NRE2-2|TSHZ2	REV__nc|ENSG00000182463|Q9NRE2-2|TSHZ2	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1713562011719	2	433.169764	864.324976	2.6506	0.0011482	1.0551	0.00045706	3.7058	0.0016052	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.7549	1	1589	1589		24.203	0	1	60065	+		52437	22295	43423	43456	56914	56914					-0.11261394235123134
SDGESHSF	8	Unmodified	_SDGESHSF_					0	0	0			REV__nc|ENSG00000182463|Q9NRE2-2|TSHZ2	REV__nc|ENSG00000182463|Q9NRE2-2|TSHZ2	MULTI-MSMS	OvCa9_classI_Rep3	3	433.171630859375	2	433.169764	864.324976	1.9505	0.00084491	3.0435	0.0013184	4.9941	0.0021633	433.17100760562903	63.152	4.2639	60.118	58.202	62.466	-3.0339					141	92	2	0	0	0	0.75241	1	2315	2315		25.45	1.2474	1	38128	+		52438	22295	43423	43456	56915	56915					-0.11261394235123134
SDGKQGAPGT	10	Unmodified	_SDGKQGAPGT_					0	0	0			REV__nc|ENSG00000060718|P12107-4|COL11A1	REV__nc|ENSG00000060718|P12107-4|COL11A1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.2858581542969	2	459.219788	916.425024	-0.39297	-0.00018046	1.9129	0.00087843	1.5199	0.00069797	459.22046800378405	65.174	0.67484	61.689	61.504	62.179	-3.4854					21	13	2	0	0	0	0.026826	1	4685	4685		44.377	15.207	1	32019	+		52439	16741	43424	43457	56916	56916					-0.036531569013277476
SDGLEPYTLL	10	Unmodified	_SDGLEPYTLL_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13;AKAP13|p.T960Hfs*6|2|0.04|ENSG00000170776|chr15:85580945-85580946|-/C|frameshift_variant;AKAP13|p.N982Ifs*27|1|0.2|ENSG00000170776|chr15:85581012-85581012|A/-|frameshift_variant;AKAP13-SPI1|1|fusion	nc|ENSG00000170776|Q12802-4|AKAP13;AKAP13-SPI1|1|fusion	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.8063354492188	2	554.282054	1106.54956	1.1264	0.00062432	1.3564	0.00075182	2.4827	0.0013761	554.2824709805941	154.75	0.85602	154.75	154.47	155.33	0					32	16	3	0	0	0	0.026956	1	18171	18171		19.997	0	1	139030			52440	7133;56	43425	43458	56917	56917					0.0005429579534848017
SDGLVFSFL	9	Unmodified	_SDGLVFSFL_					0	0	0		nc|ENSG00000214198|Q6P2S7-2|TTC41P;nc|ENSG00000214198|Q6P2S7|TTC41P;ENST00000551270.1_1_12:104283206-104309165:-|nuORF	nc|ENSG00000214198|Q6P2S7-2|TTC41P	nc|ENSG00000214198|Q6P2S7-2|TTC41P	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.3236083984375	2	492.755475	983.496398	0.14066	6.9313E-05	1.6654	0.00082066	1.8061	0.00088997	492.75503864207514	116.66	0.6263	115.3	115.09	115.72	-1.3645					20	11	2	0	0	0	0.027392	1	10884	10884		85.359	39.408	1	41876			52441	15308	43426	43459	56918	56918					0.003989628033423287
SDGLVFSFL	9	Unmodified	_SDGLVFSFL_					0	0	0		nc|ENSG00000214198|Q6P2S7-2|TTC41P;nc|ENSG00000214198|Q6P2S7|TTC41P;ENST00000551270.1_1_12:104283206-104309165:-|nuORF	nc|ENSG00000214198|Q6P2S7-2|TTC41P	nc|ENSG00000214198|Q6P2S7-2|TTC41P	MULTI-MATCH	OvCa9_classI_Rep2	2		2	492.755475	983.496398	-0.060264	-2.9695E-05	1.6085	0.0007926	1.5482	0.00076291	492.7551719484942	115.58	0.59299	115.47	115.24	115.84	-0.11777	0.084372	-2.8571E-05	NaN	85.359	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22637			52442	15308	43426	43459							0.003989628033423287
SDGRPAWMRTL	11	Unmodified	_SDGRPAWMRTL_					0	0	0		DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;ENST00000555062.1_1_14:102514125-102516009:+|nuORF	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	645.326904296875	2	645.324596	1288.63464	-0.5958	-0.00038449	3.3708	0.0021752	2.775	0.0017908	645.3267068965904	99.968	2.6534	97.643	97.263	99.917	-2.3253					142	52	6	0	0	0	0.56391	1	8948	8948		47.96	3.5823	1	2886900			52443	767	43427	43460	56919	56919					0.0018676278016300785
SDHRLRWQRRR	11	Unmodified	_SDHRLRWQRRR_					0	0	0		ENST00000404801.1_1_19:35451891-35454808:-|nuORF	ENST00000404801.1_1_19:35451891-35454808:-|nuORF	ENST00000404801.1_1_19:35451891-35454808:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	522.8070678710938	3	522.625929	1564.85596	-0.97518	-0.00050965	-1.8111	-0.00094652	-2.7863	-0.0014562	522.6249994400953	94.106	0.25551	92.21	92.102	92.358	-1.8956					6	4	2	0	0	0	0.026472	1	6074	6074		5.1424	0	1	14251			52444	11456	43428	43461	56920	56920					0.09612383591456819
SDHWELIH	8	Unmodified	_SDHWELIH_					0	0	0			REV__ENST00000482153.1_1_10:135122453-135123793:+|nuORF	REV__ENST00000482153.1_1_10:135122453-135123793:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.775146484375	2	518.745973	1035.47739	2.1611	0.001121	3.1378	0.0016277	5.2989	0.0027488	518.7473931761405	75.574	0.9072	75.574	75.292	76.199	0					36	22	2	0	0	0	0.028476	1	7625	7625		4.3163	0	1	587740	+		52445	23027	43429	43462	56921	56921					-0.03892573767711838
SDIDLEIDP	9	Unmodified	_SDIDLEIDP_					0	0	0		tr|A0A553SJC4|A0A553SJC4_NIACILPXTGcellwallanchordomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16495PE=4SV=1	tr|A0A553SJC4|A0A553SJC4_NIACILPXTGcellwallanchordomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16495PE=4SV=1	tr|A0A553SJC4|A0A553SJC4_NIACILPXTGcellwallanchordomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16495PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.334228515625	2	508.742762	1015.47097	-1.3295	-0.00067638	-1.1782	-0.00059939	-2.5077	-0.0012758	508.74209994905607	43.875	0.60127	40.867	40.536	41.137	-3.0074					16	11	2	0	0	0	0.027462	1	2098	2098		42.396	11.892	1	26910			52446	33489	43430	43463	56922	56922					-0.03614556509774047
SDIIMPPI	8	Unmodified	_SDIIMPPI_					0	0	0			REV__tr|A0A7D7A6C8|A0A7D7A6C8_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10035PE=4SV=1	REV__tr|A0A7D7A6C8|A0A7D7A6C8_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10035PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	442.72894287109375	2	443.241147	884.46774	0.98763	0.00043776	3.6919	0.0016364	4.6795	0.0020741	443.2429294427651	60.822	0.38284	60.822	60.602	60.984	0					14	8	2	0	0	0	0.028476	1	5312	5312		28.254	0	1	123460	+		52447	32657	43431	43464	56923	56923					0.020885219025331025
SDIPRTPVL	9	Unmodified	_SDIPRTPVL_					0	0	0		ENSG00000140521|ENST00000268124|POLG	ENSG00000140521|ENST00000268124|POLG	ENSG00000140521|ENST00000268124|POLG	MULTI-MSMS	OvCa9_classI_Rep2	2	499.2876281738281	2	499.287474	996.560395	-0.010404	-5.1946E-06	-0.93647	-0.00046757	-0.94688	-0.00047276	499.28693766889194	79.522	1.6653	77.812	76.789	78.454	-1.7103					98	32	4	0	0	0	0.37135	1	6715	6715		54.776	0	1	810360			52448	4853	43432	43465	56924	56924					0.061977429602734446
SDIRQAPDLVL	11	Unmodified	_SDIRQAPDLVL_					0	0	0			REV__ENSG00000136807|ENST00000373264|CDK9	REV__ENSG00000136807|ENST00000373264|CDK9	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.8791809082031	3	409.562827	1225.66665	0.62402	0.00025557	2.4176	0.00099017	3.0416	0.0012457	409.56369834401846	59.832	0.31071	59.832	59.686	59.997	0					12	7	2	0	0	0	0.025306	1	5176	5176		54.343	19.191	1	147300	+		52449	19403	43433	43466	56925	56925					0.0628445373492923
SDIVKGGIAD	10	Unmodified	_SDIVKGGIAD_					0	0	0		nc|ENSG00000107186|O75970-5|MPDZ;nc|ENSG00000107186|O75970-3|MPDZ;nc|ENSG00000107186|O75970-2|MPDZ;ENSG00000107186|ENST00000319217|MPDZ;ENST00000539508.5_1_9:13106966-13133978:-|nuORF;ENST00000381017.6_1_9:13106966-13119674:-|nuORF	nc|ENSG00000107186|O75970-5|MPDZ	nc|ENSG00000107186|O75970-5|MPDZ	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.2868347167969	2	487.761289	973.508025	1.9117	0.00093247	3.0259	0.0014759	4.9376	0.0024084	487.76260369658416	85.442	0.28348	85.442	85.38	85.663	0					11	6	2	0	0	0	0.026802	1	8992	8992		26.693	0	1	199200			52450	2594	43434	43467	56926	56926					0.020211598266769215
SDIWVVAPL	9	Unmodified	_SDIWVVAPL_					0	0	0			REV__ENSG00000175485|ENST00000311352|OR52W1	REV__ENSG00000175485|ENST00000311352|OR52W1	MULTI-MSMS	OvCa99_classI_Rep5	1	500.27825927734375	2	500.279118	998.543683	-0.19551	-9.7808E-05	-3.5847	-0.0017934	-3.7802	-0.0018912	500.2771338128258	71.133	1.0741	71.133	70.761	71.835	0					45	26	3	0	0	0	0.13154	1	6857	6857		88.643	8.9303	1	5343600	+		52451	21900	43435	43468	56927	56927					0.04435242074339385
SDKCLLGNF	9	Unmodified	_SDKCLLGNF_					0	0	0		ENST00000455071.1_1_6:86099192-86099237:-|nuORF	ENST00000455071.1_1_6:86099192-86099237:-|nuORF	ENST00000455071.1_1_6:86099192-86099237:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.7597961425781	2	498.744585	995.474617	-0.78679	-0.00039241	1.5428	0.00076946	0.756	0.00037705	498.74276883352945	80.002	0.2924	77.251	77.034	77.326	-2.7514					7	5	2	0	0	0	0.027456	1	6500	6500		30.504	0	1	7993.9			52452	12092	43436	43469	56928	56928					-0.023301652168811415
SDKNIVKKN	9	Unmodified	_SDKNIVKKN_					0	0	0			REV__tr|A0A7D6W207|A0A7D6W207_9CLOTVWAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04665PE=4SV=1	REV__tr|A0A7D6W207|A0A7D6W207_9CLOTVWAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04665PE=4SV=1	MSMS	OvCa9_classI_Rep4_	4	523.3057861328125	2	523.303655	1044.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.21	1	138.71	138.21	139.21	-1.4952								0	0	0	0.18042	1	13678	13678		34.173	3.6689	1		+		52453	31893	43437	43470	56929	56929					0.07224530363282611
SDKRPLVCRAR	11	Unmodified	_SDKRPLVCRAR_					0	0	0			REV__HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|1|1|sense	REV__HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|1|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	433.77752685546875	3	434.247067	1299.71937	-0.078226	-3.3969E-05	0.01044	4.5334E-06	-0.067786	-2.9436E-05	434.24672327420376	94.835	1.4065	92.366	92.11	93.516	-2.4685					55	27	3	0	0	0	0.026145	1	8454	8454		17.833	2.5	1	50500	+		52454	28282	43438	43471	56930	56930					0.08150133316758001
SDKRPLVCRAR	11	Unmodified	_SDKRPLVCRAR_					0	0	0			REV__HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|1|1|sense	REV__HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|1|1|sense	MULTI-MATCH	OvCa9_classI_Rep3	3		3	434.247067	1299.71937	-0.2715	-0.0001179	0.93361	0.00040542	0.6621	0.00028752	434.2469590483351	94.271	1.2608	92.375	91.95	93.211	-1.8956	0.0044329	0.00074565	NaN	22.562	60	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51175	+		52455	28282	43438	43471							0.08150133316758001
SDKTSRFHL	9	Unmodified	_SDKTSRFHL_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.7853393554688	2	545.78563	1089.55671	-0.029258	-1.5968E-05	-1.2031	-0.00065662	-1.2323	-0.00067259	545.7847166275907	113.09	1.2198	111.64	111.36	112.58	-1.4461					71	24	5	0	0	0	0.29519	1	10487	10487		63.534	3.6031	1	297060	+		52456	16672	43439	43472	56931	56931					0.015510731864196714
SDLEKQHLK	9	Unmodified	_SDLEKQHLK_					0	0	0		ENSG00000198707|ENST00000552810|CEP290	ENSG00000198707|ENST00000552810|CEP290	ENSG00000198707|ENST00000552810|CEP290	MULTI-SECPEP	OvCa9_classI_Rep2	2	549.8552856445312	2	549.301113	1096.58767	1.1758	0.00064588	2.491	0.0013683	3.6669	0.0020142	549.3023942887744	130.34	1.3411	130.11	129.86	131.2	-0.22696					43	26	3	0	0	0	0.027462	1	12929	12929		26.693	0	1	69053			52457	8851	43440	43473	56932	56932					0.04324226500648365
SDLELLKGL	9	Unmodified	_SDLELLKGL_					0	0	0		nc|ENSG00000160117|Q8NAG6-1|ANKLE1;ENSG00000160117|ENST00000404085|ANKLE1;ENST00000404085.5_1_19:17392508-17397358:+|nuORF	nc|ENSG00000160117|Q8NAG6-1|ANKLE1	nc|ENSG00000160117|Q8NAG6-1|ANKLE1	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.7668762207031	2	494.289682	986.564812	-0.78878	-0.00038988	1.8135	0.00089638	1.0247	0.0005065	494.2904374320776	68.263	1.2879	65.642	65.327	66.615	-2.6203					49	25	3	0	0	0	0.027433	1	5392	5392		64.207	0	1	69171			52458	6039	43441	43474	56933	56933					0.07099207383214434
SDLIKVAAKT	10	Unmodified	_SDLIKVAAKT_					0	0	0			REV__ENSG00000164946|ENST00000380880|FREM1	REV__ENSG00000164946|ENST00000380880|FREM1	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.2933959960938	2	523.316232	1044.61791	-0.34759	-0.0001819	-2.0469	-0.0010712	-2.3945	-0.0012531	523.3148442598135	32.741	0.39475	30.032	29.877	30.272	-2.7097					10	7	2	0	0	0	0.027343	1	1099	1099		13.454	7.5329	1	9329.1	+		52459	21042	43442	43475	56934	56934					0.09738585165860059
SDLITLPATTP	11	Unmodified	_SDLITLPATTP_					0	0	0		ENSG00000107957|ENST00000369774|SH3PXD2A;nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A;nc|ENSG00000107957|Q5TCZ1-3|SH3PXD2A	ENSG00000107957|ENST00000369774|SH3PXD2A	ENSG00000107957|ENST00000369774|SH3PXD2A	MULTI-MSMS	OvCa9_classI_Rep3	3	564.8109741210938	2	564.810979	1127.6074	-3.7232	-0.0021029	2.8979	0.0016368	-0.82526	-0.00046612	564.8125164297064	146.26	1.3933	145.3	144.9	146.29	-0.95946					62	27	3	0	0	0	0.71191	1	12303	12303		25.574	9.9322	1	156470			52460	2631	43443	43476	56935	56935					0.048705577207556416
SDLKVIVM	8	Oxidation (M)	_SDLKVIVM(Oxidation (M))_		SDLKVIVM(1)		SDLKVIVM(120)	0	0	1		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	OvCa9_classI_Rep4_	4	460.7606506347656	2	460.759704	919.504854	-0.73947	-0.00034072	0.11926	5.495E-05	-0.62021	-0.00028577	460.7596599930408	79.418	2.0301	76.666	76.227	78.257	-2.7514					95	41	3	0	0	0	0.23117	2	6431	6431;6442		119.56	13.142	1	487300			52461	2719	43444	43477	56936;56937	56936		88			0.04188193448317179
SDLKVIVM	8	Oxidation (M)	_SDLKVIVM(Oxidation (M))_					0	0	1		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MATCH	OvCa9_classI_Rep2	2		2	460.759704	919.504854	0.062777	2.8925E-05	-0.043632	-2.0104E-05	0.019145	8.8214E-06	460.7594757098423	78.67	1.8366	76.93	76.144	77.981	-1.7398	0.13182	-6.4821E-05	NaN	119.56	77	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112150			52462	2719	43444	43477				88			0.04188193448317179
SDLLIHKSI	9	Unmodified	_SDLLIHKSI_					0	0	0		nc|ENSG00000213020|Q8N823-2|ZNF611;ENSG00000213020|ENST00000652185|ZNF611;nc|ENSG00000189190|Q6ZNG1|ZNF600;ENSG00000189190|ENST00000692063|ZNF600	nc|ENSG00000213020|Q8N823-2|ZNF611	nc|ENSG00000213020|Q8N823-2|ZNF611	MULTI-MSMS	OvCa9_classI_Rep3	3	513.3032836914062	2	513.303124	1024.5917	0.34771	0.00017848	-0.97448	-0.0005002	-0.62677	-0.00032172	513.302615826109	103.47	2.7157	102.04	101.29	104.01	-1.4347					126	51	4	0	0	0	0.1944	2	7202	7188;7202		77.318	5.4401	1	1368900			52463	8544	43445	43478	56938;56939	56939					0.0803831599437217
SDLLIHKSI	9	Unmodified	_SDLLIHKSI_					0	0	0		nc|ENSG00000213020|Q8N823-2|ZNF611;ENSG00000213020|ENST00000652185|ZNF611;nc|ENSG00000189190|Q6ZNG1|ZNF600;ENSG00000189190|ENST00000692063|ZNF600	nc|ENSG00000213020|Q8N823-2|ZNF611	nc|ENSG00000213020|Q8N823-2|ZNF611	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.3031616210938	2	513.303124	1024.5917	-0.6359	-0.00032641	0.10313	5.2935E-05	-0.53277	-0.00027347	513.3031570189453	104.08	2.9198	101.97	101.54	104.46	-2.1192					129	56	4	0	0	0	0.2422	1	9455	9455		69.628	7.5202	1	1348000			52464	8544	43445	43478	56940	56940					0.0803831599437217
SDLLKRFI	8	Unmodified	_SDLLKRFI_					0	0	0		ENSG00000124143|ENST00000373345|ARHGAP40	ENSG00000124143|ENST00000373345|ARHGAP40	ENSG00000124143|ENST00000373345|ARHGAP40	MULTI-MSMS	OvCa9_classI_Rep2	2	496.300048828125	2	496.300384	990.586216	-0.35919	-0.00017827	0.21743	0.00010791	-0.14176	-7.0356E-05	496.30031555631194	121.97	1.1373	121.75	121.47	122.61	-0.21803					58	22	4	0	0	0	0.6962	1	11813	11813		44.117	5.3107	1	202890			52465	3626	43446	43479	56941	56941					0.0905463720255284
SDLLPRLAQ	9	Unmodified	_SDLLPRLAQ_					0	0	0			REV__ENST00000468151.1_1_22:41997103-41998504:-|nuORF	REV__ENST00000468151.1_1_22:41997103-41998504:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.7944030761719	2	506.792924	1011.57129	-1.0602	-0.00053728	2.1109	0.0010698	1.0508	0.00053253	506.79309840120874	53.137	1.6181	49.929	49.502	51.12	-3.208					95	31	5	0	0	0	0.27001	1	3218	3218		66.429	9.7082	1	1022800	+		52466	17413	43447	43480	56942	56942					0.06597145334558263
SDLLQRLL	8	Unmodified	_SDLLQRLL_					0	0	0		ENSG00000137504|ENST00000527447|CREBZF	ENSG00000137504|ENST00000527447|CREBZF	ENSG00000137504|ENST00000527447|CREBZF	MULTI-MSMS	OvCa9_classI_Rep3	3	479.2902526855469	2	479.290017	956.565481	-0.33467	-0.0001604	0.85312	0.00040889	0.51845	0.00024849	479.29029988395797	117.55	0.94048	116.51	116.24	117.18	-1.0324					43	18	3	0	0	0	0.39692	1	8827	8827		88.643	0	1	249320			52467	4593	43448	43481	56943	56943					0.0854604682289164
SDLLVPHKV	9	Unmodified	_SDLLVPHKV_					0	0	0		ENSG00000225781|ENST00000418316|OR6V1	ENSG00000225781|ENST00000418316|OR6V1	ENSG00000225781|ENST00000418316|OR6V1	MULTI-MSMS	OvCa99_classI_Rep5	1	504.29852294921875	2	504.297842	1006.58113	2.3145	0.0011672	3.5549	0.0017927	5.8694	0.0029599	504.2976639832617	102.31	1.4486	102.31	101.36	102.81	0					86	33	5	0	0	0	0.50149	1	11389	11389		42.396	1.8235	1	1483000			52468	9265	43449	43482	56944	56944					0.07810333339944009
SDLRRLGPI	9	Unmodified	_SDLRRLGPI_					0	0	0			REV__ENSG00000092148|ENST00000399332|HECTD1	REV__ENSG00000092148|ENST00000399332|HECTD1	MULTI-MSMS	OvCa9_classI_Rep2	2	513.808349609375	2	513.806365	1025.59818	0.22074	0.00011342	3.344	0.0017182	3.5647	0.0018316	513.8078754381862	110.61	1.3823	110.45	110.02	111.4	-0.16467					74	27	4	0	0	0	0.38529	1	10422	10422		53.351	7.3995	1	196500	+		52469	17263	43450	43483	56945	56945					0.08640253945759468
SDLRRLGPI	9	Unmodified	_SDLRRLGPI_					0	0	0			REV__ENSG00000092148|ENST00000399332|HECTD1	REV__ENSG00000092148|ENST00000399332|HECTD1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	513.806365	1025.59818	1.8457	0.00094835	1.9046	0.00097859	3.7503	0.0019269	513.8072066157304	111.65	1.2349	110.54	110.15	111.39	-1.1038	0.0060845	-0.0010056	NaN	53.351	66	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197480	+		52470	17263	43450	43483							0.08640253945759468
SDLSRAPQL	9	Unmodified	_SDLSRAPQL_					0	0	0			REV__ENST00000552162.5_1_17:40282572-40288397:-|nuORF	REV__ENST00000552162.5_1_17:40282572-40288397:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.7676696777344	2	493.766906	985.519259	-0.2047	-0.00010108	-1.2694	-0.00062678	-1.4741	-0.00072786	493.7666268521124	69.087	1.8109	65.596	65.212	67.023	-3.4902					122	36	6	0	0	0	0.27001	1	5199	5199		66.429	0.96389	1	4197400	+		52471	27493	43451	43484	56946	56946					0.025919819208070294
SDLTAKLLT	9	Unmodified	_SDLTAKLLT_					0	0	0			REV__nc|ENSG00000068784|Q8N5C6-2|SRBD1	REV__nc|ENSG00000068784|Q8N5C6-2|SRBD1	MULTI-MSMS	OvCa9_classI_Rep2	2	481.2828674316406	2	481.281857	960.549162	-0.78203	-0.00037638	0.71594	0.00034457	-0.066098	-3.1812E-05	481.2820178551359	74.89	2.1831	72.918	72.376	74.559	-1.9711					93	41	3	0	0	0	0.27001	1	6151	6151		66.429	2.8954	1	492480	+		52472	16858	43452	43485	56947	56947					0.06730920866152701
SDNVAKLI	8	Unmodified	_SDNVAKLI_					0	0	0			REV__nc|ENSG00000126217|O15068-5|MCF2L	REV__nc|ENSG00000126217|O15068-5|MCF2L	MULTI-MSMS	OvCa99_classI_Rep5	1	430.2488708496094	2	430.247818	858.481082	2.0694	0.00089035	0.50986	0.00021937	2.5792	0.0011097	430.2480056759911	78.672	0.66402	78.672	78.415	79.079	0					37	15	3	0	0	0	0.56113	1	7980	7980		71.378	0.082209	1	2045400	+		52473	18775	43453	43486	56948	56948					0.04618096006140604
SDNVAKLI	8	Unmodified	_SDNVAKLI_					0	0	0			REV__nc|ENSG00000126217|O15068-5|MCF2L	REV__nc|ENSG00000126217|O15068-5|MCF2L	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	430.247818	858.481082	2.0694	0.00089035	0.50986	0.00021937	2.5792	0.0011097	430.2480056759911	78.672	0.66402	78.672	78.415	79.079	0	0	0	NaN	71.378	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2045400	+		52474	18775	43453	43486							0.04618096006140604
SDPALNIEKM	10	Oxidation (M)	_SDPALNIEKM(Oxidation (M))_		SDPALNIEKM(1)		SDPALNIEKM(83)	0	0	1			REV__ENSG00000115414|ENST00000354785|FN1	REV__ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	OvCa99_classI_Rep5	1	567.2792358398438	2	567.278989	1132.54342	2.2638	0.0012842	-0.60718	-0.00034444	1.6566	0.00093976	567.2787878651918	108.24	5.252	108.24	107.31	112.57	0					376	118	6	0	0	0	0.28422	1	12698	12698		82.75	13.123	1	126230000	+		52475	18242	43454	43487	56949	56949		419			-0.017545457078540494
SDPCPGIPGS	10	Unmodified	_SDPCPGIPGS_					0	0	0		ENST00000275364.7_1_7:2770653-2770725:-|nuORF	ENST00000275364.7_1_7:2770653-2770725:-|nuORF	ENST00000275364.7_1_7:2770653-2770725:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	465.28631591796875	2	465.205292	928.396032	1.3666	0.00063576	1.594	0.00074153	2.9606	0.0013773	465.2054394011557	125.95	0.20227	124.9	124.73	124.94	-1.0519					5	3	2	0	0	0	0.026462	1	9820	9820		39.253	5.0803	1	16727			52476	10027	43455	43488	56950	56950					-0.07103017521978927
SDPLDTIPV	9	Unmodified	_SDPLDTIPV_					0	0	0			REV__ENST00000560078.1_1_15:41100333-41100738:+|nuORF	REV__ENST00000560078.1_1_15:41100333-41100738:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	478.2950744628906	2	478.75039	955.486227	0.079949	3.8275E-05	0.50329	0.00024095	0.58324	0.00027922	478.75038746208054	97.924	1.2336	96.164	95.962	97.195	-1.7595					35	23	2	0	0	0	0.027462	1	6500	6500		29.15	0	1	41658	+		52477	27607	43456	43489	56951	56951					0.006703550781139711
SDPLPCVGL	9	Unmodified	_SDPLPCVGL_					0	0	0			REV__ENST00000471733.5_1_3:197023303-197025446:-|nuORF	REV__ENST00000471733.5_1_3:197023303-197025446:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	449.7379455566406	2	450.728403	899.442254	1.8023	0.00081236	-3.2436	-0.001462	-1.4413	-0.00064963	450.72717988225514	147.51	0.28989	147.51	147.36	147.65	0					7	5	2	0	0	0	0.027462	1	17257	17257		26.796	5.0938	1	17737	+		52478	26291	43457	43490	56952	56952					-0.011489526198943167
SDPQLGYF	8	Unmodified	_SDPQLGYF_					0	0	0			REV__ENST00000432943.6_1_8:121160081-121289735:+|nuORF	REV__ENST00000432943.6_1_8:121160081-121289735:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	463.7123718261719	2	463.71635	925.418148	-4.8795	-0.0022627	-1.187	-0.00055042	-6.0665	-0.0028131	463.7156659367406	158.37	0.54906	158.15	157.93	158.48	-0.22696					26	14	2	0	0	0	0.74679	1	16096	16096		28.254	1.4582	1	28002	+		52479	22677	43458	43491	56953	56953					-0.04754469781903481
SDPVEMRRL	9	Oxidation (M)	_SDPVEM(Oxidation (M))RRL_		SDPVEM(1)RRL		SDPVEM(46)RRL	0	0	1		nc|ENSG00000142949|P10586-2|PTPRF;ENSG00000142949|ENST00000359947|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	nc|ENSG00000142949|P10586-2|PTPRF	MULTI-MSMS	OvCa9_classI_Rep3	3	559.7821655273438	2	559.784773	1117.55499	-2.5577	-0.0014318	-0.81331	-0.00045528	-3.371	-0.001887	559.7841057030945	140.78	1.9736	139.75	139.43	141.41	-1.0339					83	39	3	0	0	0	0.46356	1	11618	11618		45.972	11.8	1	163230			52480	5003	43459	43492	56954	56954		160			0.0009169610616481805
SDPYKLENI	9	Unmodified	_SDPYKLENI_					0	0	0		ENST00000341049.6_1_7:116199659-116199932:+|nuORF	ENST00000341049.6_1_7:116199659-116199932:+|nuORF	ENST00000341049.6_1_7:116199659-116199932:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	539.77783203125	2	539.774396	1077.53424	0.019626	1.0593E-05	3.5658	0.0019247	3.5854	0.0019353	539.7761083998364	71.662	0.98286	71.662	71.308	72.291	0					57	23	4	0	0	0	0.2422	1	6941	6941		69.628	3.1983	1	7296800			52481	10564	43460	43493	56955	56955					-0.001425710018565951
SDQSTFKPP	9	Unmodified	_SDQSTFKPP_					0	0	0			REV__nc|ENSG00000050820|P56945-6|BCAR1	REV__nc|ENSG00000050820|P56945-6|BCAR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.25933837890625	2	503.745639	1005.47673	-0.33036	-0.00016642	-1.3591	-0.00068464	-1.6895	-0.00085106	503.7455826140932	52.454	2.144	52.454	51.747	53.891	0					69	49	2	0	0	0	0.027455	1	4171	4171		42.396	9.5837	1	1339400	+		52482	28716	43461	43494	56956	56956					-0.025794132074224763
SDQTDNLTE	9	Unmodified	_SDQTDNLTE_					0	0	0		ENSG00000103740|ENST00000258873|ACSBG1	ENSG00000103740|ENST00000258873|ACSBG1	ENSG00000103740|ENST00000258873|ACSBG1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.2678527832031	2	511.717276	1021.42	-0.28878	-0.00014777	1.3575	0.00069467	1.0687	0.0005469	511.71729058902383	89.229	0.29018	86.626	86.483	86.773	-2.6027					7	5	2	0	0	0	0.027453	1	7641	7641		23.523	0.48021	1	10906			52483	2339	43462	43495	56957	56957					-0.08985505554619522
SDRKNLGLV	9	Unmodified	_SDRKNLGLV_					0	0	0		ENSG00000077274|ENST00000324068|CAPN6	ENSG00000077274|ENST00000324068|CAPN6	ENSG00000077274|ENST00000324068|CAPN6	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.7513427734375	2	501.290548	1000.56654	0.38599	0.00019349	-0.45703	-0.00022911	-0.071045	-3.5614E-05	501.29038994220014	161.66	0.56238	161.66	161.46	162.02	0					13	10	2	0	0	0	0.027455	1	18939	18939		34.173	13.691	1	19797			52484	1568	43463	43496	56958	56958					0.06628261191804086
SDRLAREHA	9	Unmodified	_SDRLAREHA_					0	0	0		nc|ENSG00000204498|Q9UBC1-2|NFKBIL1;nc|ENSG00000204498|Q9UBC1-3|NFKBIL1;ENSG00000204498|ENST00000376148|NFKBIL1	nc|ENSG00000204498|Q9UBC1-2|NFKBIL1	nc|ENSG00000204498|Q9UBC1-2|NFKBIL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.7855224609375	2	527.773054	1053.53155	-2.3771	-0.0012546	-3.1632	-0.0016694	-5.5403	-0.002924	528.2742250704438	50.194	0.67615	47.053	46.767	47.444	-3.1416					14	12	2	0	0	0	0.027462	1	2866	2866		42.396	9.5837	1	22701			52485	8992	43464	43497	56959	56959					0.006930183838449011
SDRLAREHA	9	Unmodified	_SDRLAREHA_					0	0	0		nc|ENSG00000204498|Q9UBC1-2|NFKBIL1;nc|ENSG00000204498|Q9UBC1-3|NFKBIL1;ENSG00000204498|ENST00000376148|NFKBIL1	nc|ENSG00000204498|Q9UBC1-2|NFKBIL1	nc|ENSG00000204498|Q9UBC1-2|NFKBIL1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	527.773054	1053.53155	-1.4178	-0.00074826	-5.1865	-0.0027373	-6.6043	-0.0034855	528.2728121119566	50.001	0.14929	47.207	47.083	47.232	-2.794	0.077157	-0.0010675	NaN	34.173	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7923.4			52486	8992	43464	43497							0.006930183838449011
SDRLRKLAHV	10	Unmodified	_SDRLRKLAHV_					0	0	0			REV__ENST00000407117.6_1_22:38234565-38240173:-|nuORF	REV__ENST00000407117.6_1_22:38234565-38240173:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.856689453125	2	597.856921	1193.69929	-0.38237	-0.0002286	-0.55263	-0.00033039	-0.935	-0.00055899	597.8564103488146	145.14	4.0194	143.71	141.51	145.53	-1.4357					229	77	4	0	0	0	0.74374	1	14345	14345		25.574	6.4705	1	217250	+		52487	17370	43465	43498	56960	56960					0.11018705648439209
SDRPTPRSV	9	Unmodified	_SDRPTPRSV_					0	0	0		nc|ENSG00000095637|Q9BX66-11|SORBS1;ENSG00000095637|ENST00000371247|SORBS1	nc|ENSG00000095637|Q9BX66-11|SORBS1	nc|ENSG00000095637|Q9BX66-11|SORBS1	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.3074035644531	2	507.76998	1013.52541	-0.072744	-3.6937E-05	-3.0924	-0.0015702	-3.1651	-0.0016072	507.76793167299047	96.914	1.6268	95.955	95.281	96.908	-0.95857					69	32	3	0	0	0	0.027043	1	8715	8715		88.177	0	1	99846			52488	1936	43466	43499	56961	56961					0.019185001523283063
SDRVSPSTPP	10	Unmodified	_SDRVSPSTPP_					0	0	0		sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2;sp|F5HIG1|HEPA_HCMVMDNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL102PE=3SV=1	sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2	sp|P16827|HEPA_HCMVADNAhelicase/primasecomplex-associatedproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL102PE=2SV=2	MULTI-MSMS	OvCa99_classI_Rep5	1	521.7640991210938	2	521.76182	1041.50909	-0.29379	-0.00015329	-0.21579	-0.00011259	-0.50958	-0.00026588	521.7616817442835	57.629	1.016	57.629	57.264	58.28	0					63	23	4	0	0	0	0.42082	1	4835	4835		65.465	0.30814	1	7264300			52489	32879	43467	43500	56962	56962					-0.01000625804408628
SDRWQPTV	8	Unmodified	_SDRWQPTV_					0	0	0			REV__ENST00000396946.8_1_7:2998153-3083527:-|nuORF	REV__ENST00000396946.8_1_7:2998153-3083527:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.7441711425781	2	494.745973	987.477394	-1.1841	-0.00058582	-0.8334	-0.00041232	-2.0175	-0.00099814	494.74575185485105	72.528	1.2152	69.132	68.618	69.833	-3.3961					49	24	3	0	0	0	0.61841	1	5585	5585		60.118	3.3972	1	385770	+		52490	25341	43468	43501	56963	56963					-0.016845737677272155
SDSHKPKIGFG	11	Unmodified	_SDSHKPKIGFG_					0	0	0			REV__ENSG00000166716|ENST00000560079|ZNF592	REV__ENSG00000166716|ENST00000560079|ZNF592	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.3405151367188	2	586.806562	1171.59857	-0.46391	-0.00027222	-1.4874	-0.00087283	-1.9513	-0.0011451	586.8050578844043	49.009	0.3545	49.009	48.851	49.206	0					12	7	2	0	0	0	0.025759	1	3631	3631		35.152	19.51	1	185490	+		52491	21215	43469	43502	56964	56964					0.019636288749325104
SDSLSSCVPFI	11	Unmodified	_SDSLSSCVPFI_					0	0	0			REV__nc|ENSG00000254685|O14772-2|FPGT	REV__nc|ENSG00000254685|O14772-2|FPGT	MULTI-SECPEP	OvCa9_classI_Rep3	3	577.367919921875	2	577.773539	1153.53253	0.42745	0.00024697	-2.0251	-0.0011701	-1.5977	-0.0009231	577.7725289739773	126.89	0.57732	125.82	125.55	126.12	-1.0715					18	10	3	0	0	0	0.025453	1	9928	9928		52.937	12.159	1	16317	+		52492	23520	43470	43503	56965	56965					-0.03809948082130177
SDSSAVLSETN	11	Unmodified	_SDSSAVLSETN_					0	0	0		ENST00000514462.1_1_5:43505848-43515051:-|nuORF;ENSG00000172244|ENST00000306862|C5orf34	ENST00000514462.1_1_5:43505848-43515051:-|nuORF	ENST00000514462.1_1_5:43505848-43515051:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.3271484375	2	555.251482	1108.48841	2.7908	0.0015496	-0.21196	-0.00011769	2.5788	0.0014319	555.2515183680181	94.185	0.34056	94.185	94.007	94.348	0					11	7	2	0	0	0	0.025701	1	10265	10265		22.58	9.7679	1	162030			52493	7282	43471	43504	56966	56966					-0.06149260974734716
SDTFYGHW	8	Unmodified	_SDTFYGHW_					0	0	0		ENSG00000102794|ENST00000377462|ACOD1	ENSG00000102794|ENST00000377462|ACOD1	ENSG00000102794|ENST00000377462|ACOD1	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.30322265625	2	506.711599	1011.40865	-1.0106	-0.00051208	-0.3803	-0.0001927	-1.3909	-0.00070478	506.7114466975459	97.717	0.95108	95.958	95.569	96.52	-1.7595					31	18	2	0	0	0	0.028476	1	6494	6494		20.482	0	1	17269			52494	2254	43472	43505	56967	56967					-0.09660238067419868
SDVDVKLLV	9	Unmodified	_SDVDVKLLV_					0	0	0		tr|A0A553SUT0|A0A553SUT0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_06235PE=4SV=1	tr|A0A553SUT0|A0A553SUT0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_06235PE=4SV=1	tr|A0A553SUT0|A0A553SUT0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_06235PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	494.290771484375	2	494.289682	986.564812	1.8805	0.00092953	-1.0621	-0.000525	0.81842	0.00040454	494.28900927757263	92.699	1.0034	92.699	92.301	93.305	0					48	23	3	0	0	0	0.21231	1	10016	10016		74.255	2.3776	1	4193000			52495	34637	43473	43506	56968	56968					0.07099207383203066
SDVEIPENPEA	11	Unmodified	_SDVEIPENPEA_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0-12|SYNE2;nc|ENSG00000054654|Q8WXH0-5|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OvCa9_classI_Rep2	2	600.2713012695312	2	600.274958	1198.53536	-5.4228	-0.0032552	0.41908	0.00025157	-5.0038	-0.0030036	600.2750319043287	159.18	1.1999	158.96	158.63	159.83	-0.22697					79	23	5	0	0	0	0.69808	1	16249	16249		30.318	5.7985	1	203880			52496	1212	43474	43507	56969	56969					-0.0559640142362241
SDVIDKQSI	9	Unmodified	_SDVIDKQSI_					0	0	0			REV__ENST00000505805.1_1_4:79518453-79531266:+|nuORF	REV__ENST00000505805.1_1_4:79518453-79531266:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	502.2831726074219	2	502.766571	1003.51859	-0.95309	-0.00047918	0.85305	0.00042888	-0.10004	-5.0297E-05	502.76700178041744	94.714	2.1491	92.819	92.255	94.404	-1.8956					79	42	3	0	0	0	0.027462	1	6175	6175		20.947	0	1	135020	+		52497	19571	43475	43508	56970	56970					0.016971424811004
SDVLDAFSKAP	11	Unmodified	_SDVLDAFSKAP_					0	0	0		ENSG00000118246|ENST00000402774|FASTKD2;nc|ENSG00000118246|Q9NYY8-2|FASTKD2;ENST00000487777.5_1_2:207631381-207653673:+|nuORF	ENSG00000118246|ENST00000402774|FASTKD2	ENSG00000118246|ENST00000402774|FASTKD2	MULTI-SECPEP	OvCa9_classI_Rep2	2	574.3439331054688	2	575.292953	1148.57135	-1.5981	-0.0009194	4.0113	0.0023077	2.4131	0.0013882	575.2952410637727	99.798	1.0407	98.968	98.666	99.707	-0.83051					32	20	2	0	0	0	0.02523	1	9130	9130		25.126	0	1	22061			52498	3297	43476	43509	56971	56971					0.003011005439020664
SDVLELTDDNF	11	Unmodified	_SDVLELTDDNF_					0	0	0		ENSG00000167004|ENST00000300289|PDIA3;ENST00000469684.1_1_15:44038662-44048907:+|nuORF	ENSG00000167004|ENST00000300289|PDIA3	ENSG00000167004|ENST00000300289|PDIA3	MULTI-MSMS	OvCa99_classI_Rep5	1	634.2902221679688	2	634.288065	1266.56158	1.2547	0.00079583	1.1783	0.00074737	2.433	0.0015432	634.2887458365518	132.44	0.992	132.44	132.13	133.13	0					66	20	5	0	0	0	0.051425	2	15400	15377;15400		114.89	49.429	1	2618100			52499	6746	43477	43510	56972;56973	56973					-0.06104132252153249
SDVLRSFSEII	11	Unmodified	_SDVLRSFSEII_					0	0	0		tr|A0A553SH31|A0A553SH31_NIACIIsoleucine--tRNAligaseOS=NialliacirculansOX=1397GN=ileSPE=3SV=1	tr|A0A553SH31|A0A553SH31_NIACIIsoleucine--tRNAligaseOS=NialliacirculansOX=1397GN=ileSPE=3SV=1	tr|A0A553SH31|A0A553SH31_NIACIIsoleucine--tRNAligaseOS=NialliacirculansOX=1397GN=ileSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	633.3665161132812	2	633.340435	1264.66632	-3.1825	-0.0020156	-0.057783	-3.6596E-05	-3.2402	-0.0020522	633.3401969865147	151.82	1.3585	150.39	150.08	151.44	-1.435					68	30	3	0	0	0	0.026033	1	15084	15084		13.454	0	1	43419			52500	33230	43478	43511	56974	56974					0.04457034015104
SDVQRKVL	8	Unmodified	_SDVQRKVL_					0	0	0		ENST00000536072.6_1_16:67909906-67914140:+|nuORF;ENSG00000038358|ENST00000358933|EDC4;nc|ENSG00000038358|Q6P2E9-2|EDC4	ENST00000536072.6_1_16:67909906-67914140:+|nuORF	ENST00000536072.6_1_16:67909906-67914140:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.75396728515625	2	472.779816	943.545079	1.1187	0.0005289	-2.6322	-0.0012444	-1.5134	-0.00071553	472.77860544366564	64.758	0.38857	61.272	60.969	61.358	-3.4854					11	7	2	0	0	0	0.028476	1	4598	4598		63.306	6.5852	1	80222			52501	1097	43479	43512	56975	56975					0.07104876163089102
SDVRDTLPL	9	Unmodified	_SDVRDTLPL_					0	0	0			REV__ENSG00000082781|ENST00000296181|ITGB5	REV__ENSG00000082781|ENST00000296181|ITGB5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.7892761230469	2	508.274564	1014.53457	-0.60771	-0.00030888	-2.2026	-0.0011195	-2.8103	-0.0014284	508.27345932933264	46.79	0.66699	43.717	43.398	44.065	-3.0724					22	12	2	0	0	0	0.027462	1	2509	2509		42.396	13.247	1	47764	+		52502	17090	43480	43513	56976	56976					0.027888487180121047
SDVRDTLPL	9	Unmodified	_SDVRDTLPL_					0	0	0			REV__ENSG00000082781|ENST00000296181|ITGB5	REV__ENSG00000082781|ENST00000296181|ITGB5	MULTI-MATCH	OvCa99_classI_Rep5	1		2	508.274564	1014.53457	-1.2684	-0.00064471	-9.3519	-0.0047533	-10.62	-0.005398	508.2691361124454	43.946	0.2146	43.946	43.823	44.038	0	0.11455	-0.0064944	NaN	42.396	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61489	+		52503	17090	43480	43513							0.027888487180121047
SDWSEDHE	8	Unmodified	_SDWSEDHE_					0	0	0			REV__nc|ENSG00000167528|Q96N77-2|ZNF641	REV__nc|ENSG00000167528|Q96N77-2|ZNF641	MULTI-SECPEP	OvCa9_classI_Rep3	3	502.78106689453125	2	502.683236	1003.35192	-0.86238	-0.00043351	-2.887	-0.0014513	-3.7494	-0.0018848	502.6808099837634	88.286	0.60201	86.155	85.957	86.559	-2.1309					21	11	3	0	0	0	0.028476	1	5366	5366		25.45	2.4077	1	16573	+		52504	21285	43481	43514	56977	56977					-0.1496233041460755
SDYTALGYN	9	Unmodified	_SDYTALGYN_					0	0	0		tr|A0A553SGJ5|A0A553SGJ5_NIACIRadicalSAMproteinOS=NialliacirculansOX=1397GN=CEQ21_11000PE=4SV=1	tr|A0A553SGJ5|A0A553SGJ5_NIACIRadicalSAMproteinOS=NialliacirculansOX=1397GN=CEQ21_11000PE=4SV=1	tr|A0A553SGJ5|A0A553SGJ5_NIACIRadicalSAMproteinOS=NialliacirculansOX=1397GN=CEQ21_11000PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.2991943359375	2	502.221997	1002.42944	-2.0389	-0.001024	-3.0384	-0.001526	-5.0773	-0.0025499	502.21966383930453	126.95	0.89249	125.52	125.24	126.14	-1.4357					60	17	5	0	0	0	0.027462	1	12066	12066		29.15	0	1	44633			52505	33163	43482	43515	56978	56978					-0.07167692478424215
SEAANRNNDAL	11	Unmodified	_SEAANRNNDAL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa99_classI_Rep5	1	587.7752075195312	2	587.77599	1173.53743	-0.9613	-0.00056503	-0.40072	-0.00023553	-1.362	-0.00080057	587.7758181043248	36.51	1.4569	36.51	36.257	37.714	0					108	31	6	0	0	0	3.972E-05	3	1936	1912;1936;1961		182.39	97.231	1	20852000			52506	1049	43483	43516	56979;56980;56981	56980					-0.04239927895150686
SEAEAAKNAL	10	Unmodified	_SEAEAAKNAL_					0	0	0		ENSG00000157110|ENST00000397323|RBPMS;nc|ENSG00000157110|Q93062-2|RBPMS;nc|ENSG00000157110|Q93062-3|RBPMS;nc|ENSG00000157110|Q93062-4|RBPMS;nc|ENSG00000157110|Q93062-5|RBPMS	ENSG00000157110|ENST00000397323|RBPMS	ENSG00000157110|ENST00000397323|RBPMS	MULTI-MSMS	OvCa99_classI_Rep5	1	502.2566223144531	2	502.256371	1002.49819	-0.50082	-0.00025154	-0.072537	-3.6432E-05	-0.57336	-0.00028797	502.2563482217023	48.225	1.6096	48.225	47.897	49.507	0					46	36	2	0	0	0	7.025E-06	2	3532	3510;3532		190.26	55.451	1	13173000			52507	5875	43484	43517	56982;56983	56983					-0.002960281787295571
SEAEEHHQL	9	Unmodified	_SEAEEHHQL_					0	0	0		FDPS-CLK2|1|fusion;FDPS-CLK2|2|fusion;nc|ENSG00000176444|P49760-3|CLK2;ENSG00000176444|ENST00000368361|CLK2	FDPS-CLK2|1|fusion	FDPS-CLK2|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	540.2412109375	2	540.241252	1078.46795	-0.18668	-0.00010085	0.06618	3.5753E-05	-0.1205	-6.5099E-05	540.2411920626889	30.096	0.74739	30.096	29.885	30.632	0					28	14	4	0	0	0	0.21231	1	1129	1129		74.255	23.062	1	403310			52508	7610	43485	43518	56984	56984					-0.06814386843916509
SEAEHQRAYL	10	Unmodified	_SEAEHQRAYL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	ENSG00000204592|ENST00000376630|HLA-E	MULTI-MSMS	OvCa99_classI_Rep5	1	602.2908935546875	2	602.291276	1202.568	-0.083206	-5.0115E-05	-0.19451	-0.00011715	-0.27772	-0.00016727	602.291094893264	40.733	0.8045	40.733	40.526	41.33	0					43	17	4	0	0	0	0.20536	1	2491	2491		93.598	37.164	1	1201700			52509	9006	43486	43519	56985	56985					-0.025181495100923712
SEAGSHTL	8	Unmodified	_SEAGSHTL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;HLA-F|p.D248Rfs*89|1|0.04|ENSG00000204642|chr6:29725161-29725162|-/A|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENSG00000204592|ENST00000376630|HLA-E;nc|ENSG00000204642|P30511|HLA-F;ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa99_classI_Rep5	1	401.1905822753906	2	401.1905	800.366446	1.3604	0.00054579	-1.1557	-0.00046364	0.20477	8.2151E-05	401.19001463175636	33.112	1.3656	33.112	32.7	34.065	0					61	27	4	0	0	0	0.14754	1	1492	1492		133.47	0	1	2324300			52510	9301;9006;9016;12432	43487	43520	56986	56986					-0.04172213475806075
SEAGSHTL	8	Unmodified	_SEAGSHTL_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E;nc|ENSG00000204642|P30511|HLA-F;ENSG00000204642|ENST00000259951|HLA-F;nc|ENSG00000204642|P30511-2|HLA-F;HLA-F|p.D248Rfs*89|1|0.04|ENSG00000204642|chr6:29725161-29725162|-/A|frameshift_variant;ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENSG00000204592|ENST00000376630|HLA-E;nc|ENSG00000204642|P30511|HLA-F;ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep2	2	401.1907958984375	2	401.1905	800.366446	-0.33216	-0.00013326	0.61593	0.00024711	0.28377	0.00011385	401.19068995636417	37.659	1.3309	34.95	34.731	36.062	-2.7097					48	26	4	0	0	0	0.45246	4	1702	1698;1702;1715;1729		82.305	0	1	204500			52511	9301;9006;9016;12432	43487	43520	56987;56988;56989;56990	56988					-0.04172213475806075
SEAGSRIVL	9	Unmodified	_SEAGSRIVL_					0	0	0		nc|ENSG00000159322|Q9BRR6-3|ADPGK;ENST00000569534.5_1_15:73044684-73076051:-|nuORF;ENST00000567941.5_1_15:73044684-73075795:-|nuORF;nc|ENSG00000159322|Q9BRR6-2|ADPGK;ENSG00000159322|ENST00000456471|ADPGK;nc|ENSG00000159322|Q9BRR6-4|ADPGK;ENST00000562621.1_1_15:73044684-73048205:-|nuORF	nc|ENSG00000159322|Q9BRR6-3|ADPGK	nc|ENSG00000159322|Q9BRR6-3|ADPGK	MULTI-MSMS	OvCa99_classI_Rep5	1	466.2651062011719	2	466.263999	930.513445	0.1073	5.0032E-05	0.58003	0.00027045	0.68734	0.00032048	466.26414626124495	67.467	1.22	67.467	67.136	68.356	0					73	30	4	0	0	0	0.14855	1	6316	6316		85.161	1.8736	1	5537800			52512	6003	43488	43521	56991	56991					0.04540883409140406
SEAGWGDSG	9	Unmodified	_SEAGWGDSG_					0	0	0		nc|ENSG00000152689|Q8IV61-2|RASGRP3;ENSG00000152689|ENST00000403687|RASGRP3	nc|ENSG00000152689|Q8IV61-2|RASGRP3	nc|ENSG00000152689|Q8IV61-2|RASGRP3	MULTI-MSMS	OvCa9_classI_Rep3	3	433.17120361328125	2	433.169764	864.324976	2.6506	0.0011482	1.0551	0.00045706	3.7058	0.0016052	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.68424	1	1945	1945		21.96	0	1	60065			52513	5639	43489	43522	56992	56992					-0.11261394235123134
SEAKGLVTL	9	Unmodified	_SEAKGLVTL_					0	0	0		ASNS|p.L190*|1|0.09|ENSG00000070669|chr7:97859317-97859317|A/-|frameshift_variant;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS	ASNS|p.L190*|1|0.09|ENSG00000070669|chr7:97859317-97859317|A/-|frameshift_variant	ASNS|p.L190*|1|0.09|ENSG00000070669|chr7:97859317-97859317|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	459.2689208984375	2	459.26875	916.522947	-0.93237	-0.00042821	0.66986	0.00030764	-0.26252	-0.00012057	459.2690161272345	80.426	1.1759	77.716	77.367	78.543	-2.7106					58	23	4	0	0	0	0.13504	1	6563	6563		87.696	0	1	313740			52514	122	43490	43523	56993	56993					0.06134651694674176
SEAKGLVTL	9	Unmodified	_SEAKGLVTL_					0	0	0		ASNS|p.L190*|1|0.09|ENSG00000070669|chr7:97859317-97859317|A/-|frameshift_variant;nc|ENSG00000070669|P08243-3|ASNS;nc|ENSG00000070669|P08243-2|ASNS;ENSG00000070669|ENST00000394308|ASNS	ASNS|p.L190*|1|0.09|ENSG00000070669|chr7:97859317-97859317|A/-|frameshift_variant	ASNS|p.L190*|1|0.09|ENSG00000070669|chr7:97859317-97859317|A/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	459.26875	916.522947	0.67461	0.00030983	-0.83186	-0.00038205	-0.15724	-7.2218E-05	459.26820947063754	79.575	2.0598	77.879	76.709	78.769	-1.6951	0.08186	-0.00043252	NaN	87.696	77	40	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146430			52515	122	43490	43523							0.06134651694674176
SEAKNRELL	9	Unmodified	_SEAKNRELL_					0	0	0		CDC42BPB|p.S1423Ffs*2|1|0.11|ENSG00000198752|chr14:102944030-102944031|AG/-|frameshift_variant;ENSG00000198752|ENST00000361246|CDC42BPB	CDC42BPB|p.S1423Ffs*2|1|0.11|ENSG00000198752|chr14:102944030-102944031|AG/-|frameshift_variant	CDC42BPB|p.S1423Ffs*2|1|0.11|ENSG00000198752|chr14:102944030-102944031|AG/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	530.2935180664062	2	530.293288	1058.57202	-0.6971	-0.00036967	-0.56944	-0.00030197	-1.2665	-0.00067164	530.2924531168875	39.702	0.86625	39.702	39.287	40.154	0					28	19	3	0	0	0	0.1149	1	2357	2357		93.143	2.7734	1	601720			52516	208	43491	43524	56994	56994					0.04507939983614051
SEAKSQTL	8	Unmodified	_SEAKSQTL_					0	0	0			REV__nc|ENSG00000176208|Q96QE3-2|ATAD5	REV__nc|ENSG00000176208|Q96QE3-2|ATAD5	MULTI-SECPEP	OvCa99_classI_Rep5	1	432.2055358886719	2	432.227082	862.439611	0.39459	0.00017055	-0.1255	-5.4245E-05	0.26909	0.00011631	432.2268171776186	31.732	0.29777	31.732	31.559	31.857	0					10	5	2	0	0	0	0.028476	1	1309	1309		60.294	24.676	1	35109	+		52517	21939	43492	43525	56995	56995					0.0028891524681284864
SEALKRRV	8	Unmodified	_SEALKRRV_					0	0	0		nc|ENSG00000142784|Q8N5D0-5|WDTC1;ENST00000491239.2_1_1:27614218-27630434:+|nuORF;nc|ENSG00000142784|Q8N5D0-3|WDTC1	nc|ENSG00000142784|Q8N5D0-5|WDTC1	nc|ENSG00000142784|Q8N5D0-5|WDTC1	MULTI-MSMS	OvCa99_classI_Rep5	1	479.79327392578125	2	479.793258	957.571963	0.10096	4.8441E-05	-0.054033	-2.5925E-05	0.04693	2.2517E-05	479.7930992712218	45.043	0.57829	45.043	44.795	45.373	0					33	12	4	0	0	0	0.73626	1	3078	3078		33.516	1.9858	1	1727500			52518	15071	43493	43526	56996	56996					0.0914798477426757
SEALPLPLKR	10	Unmodified	_SEALPLPLKR_					0	0	0		ENST00000420557.2_1_6:170190443-170190491:+|nuORF	ENST00000420557.2_1_6:170190443-170190491:+|nuORF	ENST00000420557.2_1_6:170190443-170190491:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.28564453125	2	562.345323	1122.67609	0.54335	0.00030555	-3.2586	-0.0018325	-2.7153	-0.0015269	562.3433507693039	40.613	1.0432	37.658	37.474	38.517	-2.9541					36	19	2	0	0	0	0.026956	1	1840	1840		42.396	10.441	1	103700			52519	11672	43494	43527	56997	56997					0.11966266811123205
SEALRILLS	9	Unmodified	_SEALRILLS_					0	0	0		CCDC141|p.P707Lfs*7|1|0.03|ENSG00000163492|chr2:178871512-178871513|-/CAAA|frameshift_variant;CCDC141|p.K1308Efs*10|1|0.17|ENSG00000163492|chr2:178837296-178837297|TT/-|frameshift_variant;nc|ENSG00000163492|Q6ZP82-1|CCDC141;ENSG00000163492|ENST00000443758|CCDC141	CCDC141|p.P707Lfs*7|1|0.03|ENSG00000163492|chr2:178871512-178871513|-/CAAA|frameshift_variant	CCDC141|p.P707Lfs*7|1|0.03|ENSG00000163492|chr2:178871512-178871513|-/CAAA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	501.30303955078125	2	501.303124	1000.5917	-0.60395	-0.00030276	1.3791	0.00069136	0.77517	0.0003886	501.3036625968001	45.316	1.7944	42.606	42.199	43.993	-2.7097					88	35	4	0	0	0	0.64427	1	2677	2677		26.693	0	1	439250			52520	193	43495	43528	56998	56998					0.09142315994370165
SEAQQRAQAAL	11	Unmodified	_SEAQQRAQAAL_					0	0	0		LAMB2|p.A1715Sfs*4|1|0.69|ENSG00000172037|chr3:49121550-49121551|-/T|frameshift_variant;ENSG00000172037|ENST00000305544|LAMB2;ENST00000469665.1_1_3:49160056-49160527:-|nuORF	LAMB2|p.A1715Sfs*4|1|0.69|ENSG00000172037|chr3:49121550-49121551|-/T|frameshift_variant	LAMB2|p.A1715Sfs*4|1|0.69|ENSG00000172037|chr3:49121550-49121551|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.8056030273438	2	586.804551	1171.59455	-0.98905	-0.00058038	1.1289	0.00066247	0.1399	8.2093E-05	586.8051237294073	52.765	1.005	49.557	49.298	50.303	-3.208					59	19	4	0	0	0	0.34475	1	3181	3181		65.157	8.525	1	479670			52521	7262	43496	43529	56999	56999					0.015615393812367984
SEAQQRAQAAL	11	Unmodified	_SEAQQRAQAAL_					0	0	0		LAMB2|p.A1715Sfs*4|1|0.69|ENSG00000172037|chr3:49121550-49121551|-/T|frameshift_variant;ENSG00000172037|ENST00000305544|LAMB2;ENST00000469665.1_1_3:49160056-49160527:-|nuORF	LAMB2|p.A1715Sfs*4|1|0.69|ENSG00000172037|chr3:49121550-49121551|-/T|frameshift_variant	LAMB2|p.A1715Sfs*4|1|0.69|ENSG00000172037|chr3:49121550-49121551|-/T|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	586.804551	1171.59455	-1.4348	-0.00084193	1.4471	0.00084915	0.012293	7.2135E-06	586.8051938501394	52.547	1.0356	49.734	49.246	50.281	-2.8129	0.088407	0.0002767	NaN	65.157	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74741			52522	7262	43496	43529							0.015615393812367984
SEAREDMAAL	10	Oxidation (M)	_SEAREDM(Oxidation (M))AAL_		SEAREDM(1)AAL		SEAREDM(86)AAL	0	0	1		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000530835.1_1_11:90016856-90017168:+|nuORF;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000167552|ENST00000301071|TUBA1A	MULTI-MSMS	OvCa99_classI_Rep5	1	554.749755859375	2	554.750595	1107.48664	0.46895	0.00026015	-0.71294	-0.0003955	-0.24399	-0.00013535	554.7500066524914	46.002	0.39952	46.002	45.754	46.154	0					24	8	4	0	0	0	0.25842	1	3217	3217		85.862	31.086	1	1559200			52523	3593;6805;6806	43497	43530	57000	57000		113			-0.06280593264364143
SEAREDMAAL	10	Oxidation (M)	_SEAREDM(Oxidation (M))AAL_		SEAREDM(1)AAL		SEAREDM(53)AAL	0	0	1		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000530835.1_1_11:90016856-90017168:+|nuORF;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000167552|ENST00000301071|TUBA1A	MULTI-MSMS	OvCa99_classI_Rep5	1	554.7509155273438	2	554.750595	1107.48664	0.28888	0.00016026	-0.35238	-0.00019548	-0.063497	-3.5225E-05	554.7503008731766	46.347	0.60871	46.347	46.154	46.762	0					26	13	3	0	0	0	0.50873	1	3269	3269		53.089	10.693	1	1323200			52524	3593;6805;6806	43497	43530	57001	57001		113			-0.06280593264364143
SEAREDMAAL	10	Unmodified	_SEAREDMAAL_					0	0	0		ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000127824|ENST00000248437|TUBA4A;nc|ENSG00000127824|P68366-2|TUBA4A;nc|ENSG00000123416|P68363-2|TUBA1B;ENST00000530835.1_1_11:90016856-90017168:+|nuORF;ENSG00000167552|ENST00000301071|TUBA1A;nc|ENSG00000167552|Q71U36-2|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000123416|ENST00000336023|TUBA1B;ENSG00000167552|ENST00000301071|TUBA1A;ENSG00000167553|ENST00000301072|TUBA1C	ENSG00000167552|ENST00000301071|TUBA1A	MULTI-MSMS	OvCa99_classI_Rep5	1	546.7547607421875	2	546.753138	1091.49172	-0.10491	-5.7359E-05	-0.10323	-5.644E-05	-0.20814	-0.0001138	546.7530708695078	64.609	1.6895	64.609	64.294	65.984	0					84	41	4	0	0	0	0.10472	2	5896	5867;5896		112.41	48.204	1	32338000			52525	3593;6805;6806	43497	43531	57002;57003	57003					-0.05036289401732574
SEAREKAVL	9	Unmodified	_SEAREKAVL_					0	0	0		nc|ENSG00000076944|Q15833-2|STXBP2;ENSG00000076944|ENST00000221283|STXBP2;nc|ENSG00000076944|Q15833-3|STXBP2;ENST00000594221.5_1_19:7706941-7707474:+|nuORF	nc|ENSG00000076944|Q15833-2|STXBP2	nc|ENSG00000076944|Q15833-2|STXBP2	MULTI-MSMS	OvCa99_classI_Rep5	1	501.7821350097656	2	501.782556	1001.55056	-1.0048	-0.0005042	-0.2975	-0.00014928	-1.3023	-0.00065348	501.78234769362433	36.595	1.3207	36.595	36.164	37.485	0					59	28	4	0	0	0	0.1804	1	1931	1931		79.713	2.9384	1	2717900			52526	1561	43498	43532	57004	57004					0.04984554954910436
SEARELVAL	9	Unmodified	_SEARELVAL_					0	0	0		ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MSMS	OvCa99_classI_Rep5	1	494.27825927734375	2	494.277106	986.53966	1.031	0.0005096	0.55816	0.00027589	1.5892	0.00078548	494.27755965193165	83.411	1.057	83.411	83.078	84.135	0					73	24	4	0	0	0	0.40818	1	8694	8694		51.193	1.1682	1	5233200			52527	4651	43499	43533	57005	57005					0.04585152580614249
SEARGPEAGY	10	Unmodified	_SEARGPEAGY_					0	0	0			REV__ENST00000409774.5_1_2:37311614-37315520:+|nuORF	REV__ENST00000409774.5_1_2:37311614-37315520:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.807861328125	2	518.738345	1035.46214	0.29396	0.00015249	0.76415	0.00039639	1.0581	0.00054888	518.7383086242858	89.907	1.1969	87.332	86.656	87.853	-2.575					37	23	3	0	0	0	0.026681	1	7708	7708		44.377	29.512	1	46952	+		52528	25477	43500	43534	57006	57006					-0.05417485355565077
SEARIRRLLL	10	Unmodified	_SEARIRRLLL_					0	0	0			REV__ENST00000591006.5_1_17:42397371-42398600:-|nuORF	REV__ENST00000591006.5_1_17:42397371-42398600:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	409.6075744628906	3	409.594573	1225.76189	1.0454	0.00042821	-2.2799	-0.00093384	-1.2345	-0.00050563	409.5938555504007	107.99	0.88773	106.79	106.43	107.32	-1.1978					18	16	2	0	0	0	0.026674	1	7709	7709		47.96	0	1	11674	+		52529	16505	43501	43535	57007	57007					0.1580385171666876
SEASLAPR	8	Unmodified	_SEASLAPR_					0	0	0		ENSG00000189051|ENST00000399398|RNF222	ENSG00000189051|ENST00000399398|RNF222	ENSG00000189051|ENST00000399398|RNF222	MULTI-MSMS	OvCa9_classI_Rep2	2	415.7213439941406	2	415.721967	829.429381	-1.0163	-0.00042249	0.92585	0.0003849	-0.090424	-3.7591E-05	415.72221629127785	119.3	1.3301	119.13	118.81	120.14	-0.17138					54	26	3	0	0	0	0.75241	1	11495	11495		25.45	0	1	206540			52530	8528	43502	43536	57008	57008					0.007843523122346596
SEASLHPVL	9	Unmodified	_SEASLHPVL_					0	0	0		nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000136518|ENST00000429709|ACTL6A;ACTL6A-UBL5|2|fusion;ACTL6A-UBL5|1|fusion	nc|ENSG00000136518|O96019-2|ACTL6A;ACTL6A-UBL5|2|fusion	nc|ENSG00000136518|O96019-2|ACTL6A	MULTI-MSMS	OvCa99_classI_Rep5	1	476.7594909667969	2	476.758549	951.502546	2.2598	0.0010774	-0.13771	-6.5656E-05	2.122	0.0010117	476.7583415350198	76.408	0.51994	76.408	76.158	76.678	0					24	12	3	0	0	0	0.21395	1	7658	7658		73.975	18.471	1	1132000			52531	4492;22	43503	43537	57009	57009					0.024854810348415413
SEASLHPVL	9	Unmodified	_SEASLHPVL_					0	0	0		nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000136518|ENST00000429709|ACTL6A;ACTL6A-UBL5|2|fusion;ACTL6A-UBL5|1|fusion	nc|ENSG00000136518|O96019-2|ACTL6A;ACTL6A-UBL5|2|fusion	nc|ENSG00000136518|O96019-2|ACTL6A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	476.758549	951.502546	0.45068	0.00021487	-0.54439	-0.00025954	-0.093701	-4.4673E-05	476.75808978813177	78.542	0.35664	76.189	76.048	76.404	-2.3527	-0.21568	-0.00024338	NaN	73.975	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20165			52532	4492;22	43503	43537							0.024854810348415413
SEASLHPVL	9	Unmodified	_SEASLHPVL_					0	0	0		nc|ENSG00000136518|O96019-2|ACTL6A;ENSG00000136518|ENST00000429709|ACTL6A;ACTL6A-UBL5|2|fusion;ACTL6A-UBL5|1|fusion	nc|ENSG00000136518|O96019-2|ACTL6A;ACTL6A-UBL5|2|fusion	nc|ENSG00000136518|O96019-2|ACTL6A	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	476.758549	951.502546	0.082674	3.9415E-05	-0.55763	-0.00026585	-0.47495	-0.00022644	476.7581569827928	79.369	0.76001	76.618	76.322	77.082	-2.7514	0.21241	-0.00025601	NaN	73.975	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74263			52533	4492;22	43503	43537							0.024854810348415413
SEATDVKSTL	10	Unmodified	_SEATDVKSTL_					0	0	0		nc|ENSG00000138119|Q9NZM1-3|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF	nc|ENSG00000138119|Q9NZM1-3|MYOF	nc|ENSG00000138119|Q9NZM1-3|MYOF	MULTI-MSMS	OvCa99_classI_Rep5	1	525.770751953125	2	525.769311	1049.52407	-0.36787	-0.00019341	0.19568	0.00010288	-0.17219	-9.053E-05	525.7692281573669	56.608	0.7536	56.608	56.34	57.093	0					34	16	3	0	0	0	0.15355	1	4702	4702		101.46	19.155	1	2964100			52534	15042	43504	43538	57010	57010					0.001288212729150473
SEATDVKSTL	10	Unmodified	_SEATDVKSTL_					0	0	0		nc|ENSG00000138119|Q9NZM1-3|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;ENSG00000138119|ENST00000359263|MYOF;nc|ENSG00000138119|Q9NZM1-5|MYOF	nc|ENSG00000138119|Q9NZM1-3|MYOF	nc|ENSG00000138119|Q9NZM1-3|MYOF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	525.769311	1049.52407	-0.2901	-0.00015253	-0.22772	-0.00011973	-0.51783	-0.00027226	525.7688773796888	60.422	1.0846	56.992	56.21	57.294	-3.43	0.19216	-0.00040519	NaN	101.46	27	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98263			52535	15042	43504	43538							0.001288212729150473
SEAVCQEKF	9	Unmodified	_SEAVCQEKF_					0	0	0		ENSG00000136560|ENST00000392749|TANK	ENSG00000136560|ENST00000392749|TANK	ENSG00000136560|ENST00000392749|TANK	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.26513671875	2	520.739499	1039.46445	2.0452	0.001065	3.7887	0.0019729	5.8339	0.0030379	520.7413395685155	94.538	0.42583	94.538	94.306	94.732	0					15	9	2	0	0	0	0.027462	1	10300	10300		29.15	6.1071	1	544830			52536	4499	43505	43539	57011	57011					-0.05370772942114854
SECVFRLNLP	10	Unmodified	_SECVFRLNLP_					0	0	0		ENST00000515408.5_1_5:112312601-112321662:+|nuORF	ENST00000515408.5_1_5:112312601-112321662:+|nuORF	ENST00000515408.5_1_5:112312601-112321662:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	589.350830078125	2	589.305341	1176.59613	-1.7892	-0.0010544	1.8951	0.0011168	0.10592	6.2418E-05	589.3064343276428	88.078	0.76455	85.947	85.648	86.413	-2.1309					25	14	2	0	0	0	0.026659	1	5370	5370		54.776	25.606	1	136050			52537	13042	43506	43540	57012	57012					0.014894571456352423
SEDAVKARL	9	Unmodified	_SEDAVKARL_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1;SPTAN1|p.Q1734Rfs*19|1|0.63|ENSG00000197694|chr9:128615697-128615725|CCAAGTAAAGGACAAGAGGGACACCATCA/-|frameshift_variant;SPTAN1|p.M1752Ifs*16|1|0.07|ENSG00000197694|chr9:128615752-128615753|-/TTCCTGAGTTCTTATG|frameshift_variant	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	OvCa99_classI_Rep5	1	494.77459716796875	2	494.774731	987.534909	-0.52031	-0.00025744	-0.193	-9.549E-05	-0.71331	-0.00035293	494.7746310501726	44.684	1.1865	44.684	44.396	45.582	0					71	26	5	0	0	0	0.14998	2	3046	3025;3046		84.916	5.4645	1	6725800			52538	8736	43507	43541	57013;57014	57014					0.04064268437844021
SEDDGKPEL	9	Unmodified	_SEDDGKPEL_					0	0	0		VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant;nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;ENST00000513016.5_1_5:82832752-82876250:+|nuORF	VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant	VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	495.2259521484375	2	495.224736	988.43492	-0.48646	-0.00024091	0.22223	0.00011006	-0.26423	-0.00013085	495.22476906754434	48.784	0.74435	48.784	48.501	49.245	0					43	16	4	0	0	0	0.045281	1	3598	3598		122.18	34.422	1	2577300			52539	1099	43508	43542	57015	57015					-0.05976013686620263
SEDDRLPVI	9	Unmodified	_SEDDRLPVI_					0	0	0		nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-5|SEC31A;SEC31A|p.I462Lfs*16|1|0.44|ENSG00000138674|chr4:82864412-82864412|T/-|frameshift_variant;ENST00000482456.6_1_10:102259886-102268850:-|nuORF;SEC31B|p.S502Rfs*5|1|0.1|ENSG00000075826|chr10:100499238-100499238|A/-|frameshift_variant;nc|ENSG00000075826|Q9NQW1-5|SEC31B;ENSG00000075826|ENST00000370345|SEC31B;nc|ENSG00000075826|Q9NQW1-4|SEC31B;SEC31B|p.T425Nfs*3|1|0.21|ENSG00000075826|chr10:100502378-100502390|TCAGATTCTGTGG/-|frameshift_variant;nc|ENSG00000075826|Q9NQW1-2|SEC31B	nc|ENSG00000138674|O94979-8|SEC31A	nc|ENSG00000138674|O94979-8|SEC31A	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.2733154296875	2	522.272021	1042.52949	-1.2014	-0.00062745	0.92825	0.0004848	-0.27313	-0.00014265	522.2723080153993	95.809	1.3631	93.384	93.105	94.468	-2.4256					62	26	4	0	0	0	0.12515	2	8438	8438;8452		90.37	21.583	1	525500			52540	4710	43509	43543	57016;57017	57016					0.009925448553758542
SEDDRLPVI	9	Unmodified	_SEDDRLPVI_					0	0	0		nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-5|SEC31A;SEC31A|p.I462Lfs*16|1|0.44|ENSG00000138674|chr4:82864412-82864412|T/-|frameshift_variant;ENST00000482456.6_1_10:102259886-102268850:-|nuORF;SEC31B|p.S502Rfs*5|1|0.1|ENSG00000075826|chr10:100499238-100499238|A/-|frameshift_variant;nc|ENSG00000075826|Q9NQW1-5|SEC31B;ENSG00000075826|ENST00000370345|SEC31B;nc|ENSG00000075826|Q9NQW1-4|SEC31B;SEC31B|p.T425Nfs*3|1|0.21|ENSG00000075826|chr10:100502378-100502390|TCAGATTCTGTGG/-|frameshift_variant;nc|ENSG00000075826|Q9NQW1-2|SEC31B	nc|ENSG00000138674|O94979-8|SEC31A	nc|ENSG00000138674|O94979-8|SEC31A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	522.272021	1042.52949	-0.092543	-4.8333E-05	-0.25175	-0.00013148	-0.34429	-0.00017981	522.2717183462466	94.486	1.5827	93.386	93.01	94.593	-1.0995	0.050942	-0.00067242	NaN	90.37	66	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	294090			52541	4710	43509	43543							0.009925448553758542
SEDDRLPVI	9	Unmodified	_SEDDRLPVI_					0	0	0		nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;ENST00000436790.6_1_4:83784452-83812260:-|nuORF;nc|ENSG00000138674|O94979-5|SEC31A;SEC31A|p.I462Lfs*16|1|0.44|ENSG00000138674|chr4:82864412-82864412|T/-|frameshift_variant;ENST00000482456.6_1_10:102259886-102268850:-|nuORF;SEC31B|p.S502Rfs*5|1|0.1|ENSG00000075826|chr10:100499238-100499238|A/-|frameshift_variant;nc|ENSG00000075826|Q9NQW1-5|SEC31B;ENSG00000075826|ENST00000370345|SEC31B;nc|ENSG00000075826|Q9NQW1-4|SEC31B;SEC31B|p.T425Nfs*3|1|0.21|ENSG00000075826|chr10:100502378-100502390|TCAGATTCTGTGG/-|frameshift_variant;nc|ENSG00000075826|Q9NQW1-2|SEC31B	nc|ENSG00000138674|O94979-8|SEC31A	nc|ENSG00000138674|O94979-8|SEC31A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	522.272021	1042.52949	-0.66897	-0.00034938	0.58006	0.00030295	-0.088903	-4.6432E-05	522.2721779881014	95.131	1.641	93.236	92.964	94.605	-1.8956	-0.099506	0.00019645	NaN	90.37	73	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	595370			52542	4710	43509	43543							0.009925448553758542
SEDDVKMAL	9	Unmodified	_SEDDVKMAL_					0	0	0		ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	ENSG00000169813|ENST00000682386|HNRNPF	MULTI-MSMS	OvCa99_classI_Rep5	1	504.2406005859375	2	504.239332	1006.46411	2.0899	0.0010538	-0.061672	-3.1097E-05	2.0283	0.0010227	504.2391570703537	77.314	0.96707	77.314	77.044	78.011	0					63	22	4	0	0	0	0.025955	2	7811	7781;7811		139.97	33.555	1	8719700			52543	7039	43510	43544	57018;57019	57019					-0.03886192661968835
SEDEPTRSL	9	Unmodified	_SEDEPTRSL_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000588484.1_1_19:12826020-12830096:-|nuORF;ENST00000589956.5_1_19:12822112-12831764:-|nuORF	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	OvCa99_classI_Rep5	1	517.2438354492188	2	517.24346	1032.47237	-0.69823	-0.00036115	-0.0033742	-1.7453E-06	-0.7016	-0.0003629	517.2434477030738	48.007	1.3945	48.007	47.681	49.075	0					56	31	2	0	0	0	0.0077394	2	3508	3484;3508		181.41	62.664	1	23227000			52544	2471	43511	43545	57020;57021	57021					-0.04256922420995579
SEDEPTRSL	9	Unmodified	_SEDEPTRSL_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000588484.1_1_19:12826020-12830096:-|nuORF;ENST00000589956.5_1_19:12822112-12831764:-|nuORF	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	OvCa9_classI_Rep2	2	517.2435913085938	2	517.24346	1032.47237	-1.016	-0.00052551	0.75682	0.00039146	-0.25917	-0.00013405	517.2437688751667	52.086	1.2854	49.273	48.897	50.183	-2.8129					72	25	5	0	0	0	0.03923	4	3461	3451;3454;3461;3469		127.46	26.209	1	301070			52545	2471	43511	43545	57022;57023;57024;57025	57024					-0.04256922420995579
SEDEPTRSL	9	Unmodified	_SEDEPTRSL_					0	0	0		nc|ENSG00000105576|O14787-2|TNPO2;ENSG00000105576|ENST00000425528|TNPO2;nc|ENSG00000083312|Q92973-2|TNPO1;ENSG00000083312|ENST00000337273|TNPO1;ENST00000588484.1_1_19:12826020-12830096:-|nuORF;ENST00000589956.5_1_19:12822112-12831764:-|nuORF	nc|ENSG00000105576|O14787-2|TNPO2	nc|ENSG00000105576|O14787-2|TNPO2	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.2435302734375	2	517.24346	1032.47237	-0.59131	-0.00030585	0.058993	3.0514E-05	-0.53231	-0.00027534	517.2434441909481	52.172	1.5591	48.964	48.641	50.2	-3.208					83	30	4	0	0	0	0.0070026	4	3110	3098;3110;3124;3137		185.72	72.307	1	1922000			52546	2471	43511	43545	57026;57027;57028;57029	57027					-0.04256922420995579
SEDEVKLAL	9	Unmodified	_SEDEVKLAL_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000514332.5_1_5:179048171-179050134:-|nuORF;ENST00000513972.5_1_5:179047887-179050134:-|nuORF;ENST00000524180.5_1_5:179047015-179050134:-|nuORF;HNRNPH1-TRAFD1|1|fusion	ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	MULTI-MSMS	OvCa99_classI_Rep5	1	502.2702331542969	2	502.268947	1002.52334	2.649	0.0013305	-0.67419	-0.00033863	1.9748	0.00099188	502.2685058727369	90.29	0.91793	90.29	90.02	90.938	0					48	22	4	0	0	0	0.025955	1	9696	9696		139.97	19.349	1	9931700			52547	6970	43512	43546	57030	57030					0.022180266238478907
SEDEVKLAL	9	Unmodified	_SEDEVKLAL_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000514332.5_1_5:179048171-179050134:-|nuORF;ENST00000513972.5_1_5:179047887-179050134:-|nuORF;ENST00000524180.5_1_5:179047015-179050134:-|nuORF;HNRNPH1-TRAFD1|1|fusion	ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.2696228027344	2	502.268947	1002.52334	-1.3425	-0.00067429	0.93155	0.00046789	-0.41094	-0.0002064	502.2693078091277	92.995	1.2477	90.488	89.857	91.105	-2.5072					55	24	3	0	0	0	0.025955	2	8091	8091;8104		139.97	10.288	1	558210			52548	6970	43512	43546	57031;57032	57031					0.022180266238478907
SEDEVKLAL	9	Unmodified	_SEDEVKLAL_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000514332.5_1_5:179048171-179050134:-|nuORF;ENST00000513972.5_1_5:179047887-179050134:-|nuORF;ENST00000524180.5_1_5:179047015-179050134:-|nuORF;HNRNPH1-TRAFD1|1|fusion	ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	502.268947	1002.52334	0.24116	0.00012113	-0.48786	-0.00024504	-0.24671	-0.00012391	502.268589171983	91.799	1.5718	90.563	90.167	91.738	-1.2355	0.13211	-0.00010591	NaN	139.97	52	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	320520			52549	6970	43512	43546							0.022180266238478907
SEDEVKLAL	9	Unmodified	_SEDEVKLAL_					0	0	0		ENSG00000169045|ENST00000393432|HNRNPH1;ENST00000514332.5_1_5:179048171-179050134:-|nuORF;ENST00000513972.5_1_5:179047887-179050134:-|nuORF;ENST00000524180.5_1_5:179047015-179050134:-|nuORF;HNRNPH1-TRAFD1|1|fusion	ENSG00000169045|ENST00000393432|HNRNPH1	ENSG00000169045|ENST00000393432|HNRNPH1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	502.268947	1002.52334	-1.6436	-0.00082552	-0.1877	-9.4277E-05	-1.8313	-0.0009198	502.26875118554904	92.407	1.4299	90.383	90.135	91.565	-2.0241	-0.047867	0.00019561	NaN	139.97	63	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	635790			52550	6970	43512	43546							0.022180266238478907
SEDGAIHVI	9	Unmodified	_SEDGAIHVI_					0	0	0		nc|ENSG00000129657|Q92503-3|SEC14L1;ENSG00000129657|ENST00000436233|SEC14L1;nc|ENSG00000129657|Q92503-2|SEC14L1;SEC14L1|p.N120Kfs*2|1|0.29|ENSG00000129657|chr17:77193430-77193431|-/A|frameshift_variant	nc|ENSG00000129657|Q92503-3|SEC14L1	nc|ENSG00000129657|Q92503-3|SEC14L1	MSMS	OvCa99_classI_Rep5	1	470.7427978515625	2	470.740357	939.46616	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.772	1	75.772	75.272	76.272	0								0	0	0	0.028249	1	7561	7561		114.59	46.101	1				52551	3941	43513	43547	57033	57033					-0.005993958618546458
SEDGDAHVL	9	Unmodified	_SEDGDAHVL_					0	0	0		PELP1-CAMTA2|3|fusion;PELP1-CAMTA2|1|fusion;PELP1-CAMTA2|2|fusion;ENSG00000141456|ENST00000572293|PELP1	PELP1-CAMTA2|3|fusion	PELP1-CAMTA2|3|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	471.712646484375	2	471.711796	941.40904	-0.52542	-0.00024785	0.74473	0.0003513	0.21931	0.00010345	471.7119694465537	51.892	0.72126	51.892	51.669	52.39	0					45	16	4	0	0	0	0.037627	1	4031	4031		128.86	41.107	1	3606500			52552	15489	43514	43548	57034	57034					-0.0640086313824213
SEDGSHTL	8	Unmodified	_SEDGSHTL_					0	0	0		nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C	nc|ENSG00000204525|P10321-2|HLA-C	nc|ENSG00000204525|P10321-2|HLA-C	MULTI-MSMS	OvCa99_classI_Rep5	1	423.185546875	2	423.185414	844.356276	-0.16665	-7.0524E-05	0.18274	7.7335E-05	0.016094	6.8107E-06	423.18542147169615	33.559	0.922	33.559	33.335	34.257	0					49	18	5	0	0	0	0.20467	1	1547	1547		123.99	58.091	1	1110200			52553	8996	43515	43549	57035	57035					-0.07212821201051156
SEDGSLHVFVL	11	Unmodified	_SEDGSLHVFVL_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000420783.7_1_3:49051556-49052718:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MULTI-MSMS	OvCa9_classI_Rep3	3	601.8060302734375	2	601.806228	1201.5979	3.2393	0.0019494	-3.1422	-0.001891	0.097099	5.8435E-05	601.8041789779146	121.65	1.1521	120.62	120.27	121.43	-1.0286					47	21	4	0	0	0	0.3578	1	9325	9325		64.207	18.235	1	117250			52554	7745	43516	43550	57036	57036					0.005167894352325675
SEDGSLHVFVL	11	Unmodified	_SEDGSLHVFVL_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000420783.7_1_3:49051556-49052718:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MULTI-MATCH	OvCa99_classI_Rep5	1		2	601.806228	1201.5979	2.4351	0.0014654	-0.29724	-0.00017888	2.1378	0.0012866	601.8061912065201	120.65	0.26511	120.65	120.52	120.78	0	-0.012156	-9.6266E-05	NaN	64.207	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128550			52555	7745	43516	43550							0.005167894352325675
SEDGSLHVFVL	11	Unmodified	_SEDGSLHVFVL_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000420783.7_1_3:49051556-49052718:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	601.806228	1201.5979	-1.4066	-0.00084648	1.4453	0.00086982	0.038788	2.3343E-05	601.8068315926228	120.92	0.93755	120.72	120.46	121.4	-0.19719	0.060575	0.0020011	NaN	64.207	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96859			52556	7745	43516	43550							0.005167894352325675
SEDGSLHVFVL	11	Unmodified	_SEDGSLHVFVL_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000420783.7_1_3:49051556-49052718:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	601.806228	1201.5979	0.56661	0.00034099	-0.34521	-0.00020775	0.22139	0.00013324	601.8057688004834	122	0.96767	120.65	120.36	121.33	-1.3479	-0.0096114	-0.00015401	NaN	64.207	52	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106560			52557	7745	43516	43550							0.005167894352325675
SEDKGALAKL	10	Unmodified	_SEDKGALAKL_					0	0	0		ENSG00000148303|ENST00000323345|RPL7A;ENST00000482859.1_1_4:113709241-113709472:-|nuORF;ENST00000463740.5_1_9:136217403-136218218:+|nuORF;ENST00000453064.1_1_7:76744718-76745129:-|nuORF;ENST00000401715.2_1_6:10118966-10119482:+|nuORF;ENST00000473054.1_1_14:68805457-68806021:-|nuORF	ENSG00000148303|ENST00000323345|RPL7A	ENSG00000148303|ENST00000323345|RPL7A	MULTI-MSMS	OvCa99_classI_Rep5	1	516.291259765625	2	516.290214	1030.56587	-0.49632	-0.00025625	-0.02994	-1.5458E-05	-0.52626	-0.0002717	516.2901910143041	52.365	1.0481	52.365	52.083	53.131	0					51	23	3	0	0	0	0.03438	1	4090	4090		134.77	16.023	1	9930700			52558	5398	43517	43551	57037	57037					0.051814217520814054
SEDKKNIIL	9	Unmodified	_SEDKKNIIL_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	OvCa99_classI_Rep5	1	530.3065185546875	2	530.305864	1058.59717	-0.4564	-0.00024203	-1.273	-0.00067509	-1.7294	-0.00091712	530.3055007424592	53.796	3.9614	53.796	53.347	57.309	0					264	94	7	0	0	0	0.019133	7	4336	4277;4306;4336;4366;4398;4427;4476		148.04	27.422	1	260990000			52559	7317	43518	43552	57038;57039;57040;57041;57042;57043;57044	57040					0.07021994786191499
SEDKKNIIL	9	Unmodified	_SEDKKNIIL_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	OvCa9_classI_Rep2	2	530.305908203125	2	530.305864	1058.59717	-1.1013	-0.00058405	0.98185	0.00052068	-0.11948	-6.3363E-05	530.3062513399692	59.112	1.9095	56.332	55.74	57.649	-2.7801					134	36	6	0	0	0	0.091859	1	4282	4282		99.375	17.07	1	765210			52560	7317	43518	43552	57045	57045					0.07021994786191499
SEDKKNIIL	9	Unmodified	_SEDKKNIIL_					0	0	0		ENSG00000172757|ENST00000308162|CFL1;ENST00000530945.1_1_11:65623404-65625570:-|nuORF	ENSG00000172757|ENST00000308162|CFL1	ENSG00000172757|ENST00000308162|CFL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.3065795898438	2	530.305864	1058.59717	-0.64097	-0.00033991	-0.15325	-8.1267E-05	-0.79422	-0.00042118	530.3057582381667	59.593	1.3281	56.201	55.805	57.133	-3.392					69	26	4	0	0	0	0.045281	3	3985	3985;4011;4025		122.18	13.483	1	2080400			52561	7317	43518	43552	57046;57047;57048	57046					0.07021994786191499
SEDKQVKII	9	Unmodified	_SEDKQVKII_					0	0	0			REV__nc|ENSG00000198000|Q76FK4-2|NOL8	REV__nc|ENSG00000198000|Q76FK4-2|NOL8	MULTI-MSMS	OvCa9_classI_Rep2	2	530.3062133789062	2	530.305864	1058.59717	-1.1013	-0.00058405	0.98185	0.00052068	-0.11948	-6.3363E-05	530.3062513399692	59.112	1.9095	56.332	55.74	57.649	-2.7801					134	36	6	0	0	0	0.11471	3	4273	4273;4277;4294		93.195	0	1	765210	+		52562	22978	43519	43553	57049;57050;57051	57049					0.07021994786191499
SEDKQVKII	9	Unmodified	_SEDKQVKII_					0	0	0			REV__nc|ENSG00000198000|Q76FK4-2|NOL8	REV__nc|ENSG00000198000|Q76FK4-2|NOL8	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.30615234375	2	530.305864	1058.59717	-0.64097	-0.00033991	-0.15325	-8.1267E-05	-0.79422	-0.00042118	530.3057582381667	59.593	1.3281	56.201	55.805	57.133	-3.392					69	26	4	0	0	0	0.13482	1	3975	3975		87.754	0	1	2080400	+		52563	22978	43519	43553	57052	57052					0.07021994786191499
SEDLNKHVL	9	Unmodified	_SEDLNKHVL_					0	0	0		ZNF217|p.M86V|1|0.04|ENSG00000171940|chr20:53582571-53582571|T/C|missense_variant;ZNF217|p.D429Gfs*2|1|0.07|ENSG00000171940|chr20:53581541-53581542|-/C|frameshift_variant;ZNF217|p.H454Pfs*4|1|0.19|ENSG00000171940|chr20:53581466-53581467|-/G|frameshift_variant;ENSG00000171940|ENST00000371471|ZNF217	ZNF217|p.M86V|1|0.04|ENSG00000171940|chr20:53582571-53582571|T/C|missense_variant	ZNF217|p.M86V|1|0.04|ENSG00000171940|chr20:53582571-53582571|T/C|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	527.7808227539062	2	527.780013	1053.54547	-0.59918	-0.00031623	-0.011148	-5.8838E-06	-0.61032	-0.00032212	527.7800716234863	50.798	0.82338	50.798	50.551	51.374	0					53	18	4	0	0	0	0.043101	2	3892	3868;3892		124.08	24.705	1	9389800			52564	7251	43520	43554	57053;57054	57054					0.02084251092287559
SEDPINNIL	9	Unmodified	_SEDPINNIL_					0	0	0			REV__nc|ENSG00000148735|Q5SXH7-4|PLEKHS1	REV__nc|ENSG00000148735|Q5SXH7-4|PLEKHS1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7593078613281	2	507.758746	1013.50294	-2.4747	-0.0012565	4.1285	0.0020963	1.6538	0.00083974	507.7606847903374	145.52	1.1407	145.29	144.98	146.12	-0.22696					50	22	3	0	0	0	0.46377	1	14664	14664		45.952	3.4775	1	73594	+		52565	20123	43521	43555	57055	57055					-0.003271440359412736
SEDPNQAKL	9	Unmodified	_SEDPNQAKL_					0	0	0		ENST00000530514.5_1_17:45668242-45699283:+|nuORF;nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;ENST00000534807.1_1_17:45673771-45679230:+|nuORF	ENST00000530514.5_1_17:45668242-45699283:+|nuORF	ENST00000530514.5_1_17:45668242-45699283:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	501.2486572265625	2	501.248546	1000.48254	-0.35069	-0.00017578	0.048659	2.439E-05	-0.30203	-0.00015139	501.2484660387287	44.813	0.67362	44.813	44.528	45.202	0					28	14	3	0	0	0	0.075543	1	3049	3049		104.06	25.793	1	1389000			52566	4903	43522	43556	57056	57056					-0.017683146957665485
SEDPSHPSM	9	Unmodified	_SEDPSHPSM_					0	0	0		nc|ENSG00000111642|Q14839-2|CHD4;ENSG00000111642|ENST00000544040|CHD4	nc|ENSG00000111642|Q14839-2|CHD4	nc|ENSG00000111642|Q14839-2|CHD4	MULTI-MSMS	OvCa99_classI_Rep5	1	493.69708251953125	2	493.697832	985.38111	0.36284	0.00017913	-1.071	-0.00052873	-0.70813	-0.0003496	493.69734599756794	45.559	2.22	45.559	45.202	47.422	0					121	50	4	0	0	0	0.023304	2	3160	3131;3160		143.11	59.82	1	31591000			52567	14960	43523	43557	57057;57058	57058					-0.11216509389964813
SEDPSHPSM	9	Unmodified	_SEDPSHPSM_					0	0	0		nc|ENSG00000111642|Q14839-2|CHD4;ENSG00000111642|ENST00000544040|CHD4	nc|ENSG00000111642|Q14839-2|CHD4	nc|ENSG00000111642|Q14839-2|CHD4	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.6986999511719	2	493.697832	985.38111	-1.9551	-0.00096522	1.5603	0.00077034	-0.39474	-0.00019488	493.69848796563326	49.656	1.4524	46.515	46.147	47.6	-3.1416					59	27	3	0	0	0	0.33652	1	2812	2812		58.782	0	1	301130			52568	14960	43523	43557	57059	57059					-0.11216509389964813
SEDPVAIKI	9	Unmodified	_SEDPVAIKI_					0	0	0		ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10;ENST00000540269.6_1_16:84778297-84793504:+|nuORF	ENSG00000103194|ENST00000219473|USP10	ENSG00000103194|ENST00000219473|USP10	MULTI-MSMS	OvCa99_classI_Rep5	1	486.2754211425781	2	486.274032	970.533512	2.2375	0.001088	0.035781	1.7399E-05	2.2733	0.0011054	486.2739790771676	90.471	0.7472	90.471	90.228	90.976	0					35	18	3	0	0	0	0.059253	1	9708	9708		113.41	31.107	1	2907200			52569	2292	43524	43558	57060	57060					0.0470663434908829
SEDPVVGHL	9	Unmodified	_SEDPVVGHL_					0	0	0		ENSG00000037897|ENST00000324871|METTL1;ENST00000547653.1_2_12:58162781-58163352:-|nuORF	ENSG00000037897|ENST00000324871|METTL1	ENSG00000037897|ENST00000324871|METTL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.2944030761719	2	476.740357	951.46616	0.033961	1.619E-05	1.0113	0.00048215	1.0453	0.00049834	476.7407331285149	73.515	0.63161	73.515	73.276	73.907	0					34	15	3	0	0	0	0.02701	1	7211	7211		63.306	29.813	1	2300600			52570	1092	43525	43559	57061	57061					-0.011513958618593279
SEDRARASL	9	Unmodified	_SEDRARASL_					0	0	0		ENST00000545700.5_1_12:6562264-6567817:+|nuORF;nc|ENSG00000139192|Q9BX59-5|TAPBPL;nc|ENSG00000139192|Q9BX59-4|TAPBPL;nc|ENSG00000139192|Q9BX59-6|TAPBPL;nc|ENSG00000139192|Q9BX59-3|TAPBPL;ENST00000539384.5_1_12:6560901-6571312:+|nuORF;ENSG00000139192|ENST00000266556|TAPBPL;nc|ENSG00000139192|Q9BX59-2|TAPBPL;nc|ENSG00000139192|Q9BX59-7|TAPBPL	ENST00000545700.5_1_12:6562264-6567817:+|nuORF	ENST00000545700.5_1_12:6562264-6567817:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	502.7596130371094	2	502.759612	1003.50467	-0.58457	-0.0002939	0.077562	3.8995E-05	-0.50701	-0.0002549	502.7595120481643	33.718	0.48395	33.718	33.533	34.017	0					23	9	4	0	0	0	0.2422	1	1572	1572		69.628	10.846	1	427560			52571	4754	43526	43560	57062	57062					0.003059097726691107
SEDSGFVPVE	10	Unmodified	_SEDSGFVPVE_					0	0	0		ENSG00000166669|ENST00000562102|ATF7IP2;nc|ENSG00000166669|Q5U623-2|ATF7IP2	ENSG00000166669|ENST00000562102|ATF7IP2;nc|ENSG00000166669|Q5U623-2|ATF7IP2	ENSG00000166669|ENST00000562102|ATF7IP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.3260498046875	2	533.240386	1064.46622	1.9962	0.0010645	-1.6098	-0.00085844	0.38636	0.00020602	533.2394571016814	110.36	0.26888	110.36	110.22	110.49	0					8	5	2	0	0	0	0.027088	1	12516	12516		14.137	3.0404	1	68975			52572	6700;15157	43527	43561	57063	57063					-0.06343440652517529
SEDSHLESL	9	Unmodified	_SEDSHLESL_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;MAP4|p.I601M|1|0.05|ENSG00000047849|chr3:47916024-47916024|T/C|missense_variant	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	OvCa99_classI_Rep5	1	508.7319030761719	2	508.730186	1015.44582	0.17979	9.1462E-05	-0.19687	-0.00010015	-0.017084	-8.6914E-06	508.7300104663398	62.788	1.0337	62.788	62.501	63.534	0					66	25	4	0	0	0	0.036687	1	5596	5596		129.68	24.414	1	12650000			52573	1151	43528	43562	57064	57064					-0.06128611312328758
SEDSHLESL	9	Unmodified	_SEDSHLESL_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;MAP4|p.I601M|1|0.05|ENSG00000047849|chr3:47916024-47916024|T/C|missense_variant	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.731689453125	2	508.730186	1015.44582	0.27348	0.00013913	-0.70638	-0.00035936	-0.4329	-0.00022023	508.72973532300233	67.057	1.0863	63.567	63.247	64.333	-3.4902					52	21	4	0	0	0	0.11171	1	4913	4913		94.006	20.032	1	479000			52574	1151	43528	43562	57065	57065					-0.06128611312328758
SEDSHLESL	9	Unmodified	_SEDSHLESL_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;MAP4|p.I601M|1|0.05|ENSG00000047849|chr3:47916024-47916024|T/C|missense_variant	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	508.730186	1015.44582	0.28276	0.00014385	-0.021122	-1.0745E-05	0.26164	0.0001331	508.7298361098584	66.437	1.2406	63.741	63.319	64.559	-2.6958	0.087012	0.00052985	NaN	94.006	48	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89609			52575	1151	43528	43562							-0.06128611312328758
SEDSSNVVHL	10	Unmodified	_SEDSSNVVHL_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MULTI-MSMS	OvCa99_classI_Rep5	1	543.7582397460938	2	543.756735	1085.49892	-0.19414	-0.00010556	0.87491	0.00047574	0.68078	0.00037018	543.7570659321789	69.393	0.48513	69.393	69.106	69.591	0					41	11	5	0	0	0	0.017847	2	6592	6589;6592		150.36	78.484	1	6931300			52576	6050	43529	43563	57066;57067	57067					-0.04041233529665078
SEDTIHTHL	9	Unmodified	_SEDTIHTHL_					0	0	0		VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant;nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;VCAN|p.Q2143Kfs*20|1|0.07|ENSG00000038427|chr5:83539428-83539429|-/AAAAAGAAGAA|frameshift_variant;VCAN|p.G2239Afs*2|1|0.05|ENSG00000038427|chr5:83539715-83539715|A/-|frameshift_variant;nc|ENSG00000038427|P13611-3|VCAN;VCAN|p.G775Vfs*21|1|0.12|ENSG00000038427|chr5:83520629-83520630|-/TTGAT|frameshift_variant	VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant	VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	526.755615234375	2	526.753995	1051.49344	-0.66727	-0.00035149	0.37534	0.00019771	-0.29193	-0.00015377	526.7540640816235	48.329	0.82259	48.329	48.073	48.895	0					39	18	3	0	0	0	0.055688	1	3547	3547		115.46	7.3715	1	1391700			52577	1099	43530	43564	57068	57068					-0.030249123214844076
SEDTIHTHL	9	Unmodified	_SEDTIHTHL_					0	0	0		VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant;nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;VCAN|p.Q2143Kfs*20|1|0.07|ENSG00000038427|chr5:83539428-83539429|-/AAAAAGAAGAA|frameshift_variant;VCAN|p.G2239Afs*2|1|0.05|ENSG00000038427|chr5:83539715-83539715|A/-|frameshift_variant;nc|ENSG00000038427|P13611-3|VCAN;VCAN|p.G775Vfs*21|1|0.12|ENSG00000038427|chr5:83520629-83520630|-/TTGAT|frameshift_variant	VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant	VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	526.753995	1051.49344	-1.3642	-0.0007186	1.6531	0.00087076	0.28885	0.00015215	526.7545010959841	51.136	0.90356	47.963	47.721	48.624	-3.1734	-0.18309	0.0011115	NaN	115.46	29	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52387			52578	1099	43530	43564							-0.030249123214844076
SEDVKPKTL	9	Unmodified	_SEDVKPKTL_					0	0	0		nc|ENSG00000064042|Q9UPQ0-9|LIMCH1;nc|ENSG00000064042|Q9UPQ0-8|LIMCH1;nc|ENSG00000064042|Q9UPQ0-6|LIMCH1;nc|ENSG00000064042|Q9UPQ0-5|LIMCH1;nc|ENSG00000064042|Q9UPQ0-10|LIMCH1;nc|ENSG00000064042|Q9UPQ0-2|LIMCH1;nc|ENSG00000064042|Q9UPQ0-4|LIMCH1;nc|ENSG00000064042|Q9UPQ0|LIMCH1;nc|ENSG00000064042|Q9UPQ0-3|LIMCH1;ENSG00000064042|ENST00000503057|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.78515625	2	508.784764	1015.55498	-1.3145	-0.00066882	1.1597	0.00059003	-0.15486	-7.8792E-05	508.7851982402272	44.777	1.0242	41.739	41.362	42.386	-3.0385					44	19	4	0	0	0	0.03923	2	2243	2243;2255		127.46	39.765	1	472130			52579	1292	43531	43565	57069;57070	57069					0.04782019377819324
SEDVKPKTL	9	Unmodified	_SEDVKPKTL_					0	0	0		nc|ENSG00000064042|Q9UPQ0-9|LIMCH1;nc|ENSG00000064042|Q9UPQ0-8|LIMCH1;nc|ENSG00000064042|Q9UPQ0-6|LIMCH1;nc|ENSG00000064042|Q9UPQ0-5|LIMCH1;nc|ENSG00000064042|Q9UPQ0-10|LIMCH1;nc|ENSG00000064042|Q9UPQ0-2|LIMCH1;nc|ENSG00000064042|Q9UPQ0-4|LIMCH1;nc|ENSG00000064042|Q9UPQ0|LIMCH1;nc|ENSG00000064042|Q9UPQ0-3|LIMCH1;ENSG00000064042|ENST00000503057|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	508.784764	1015.55498	-0.0012118	-6.1654E-07	-0.16939	-8.6181E-05	-0.1706	-8.6797E-05	508.78437941097263	44.613	0.64709	41.903	41.452	42.099	-2.7097	0.082018	-0.00087924	NaN	127.46	31	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90779			52580	1292	43531	43565							0.04782019377819324
SEEAASPH	8	Unmodified	_SEEAASPH_					0	0	0		ENST00000465063.5_1_22:51207206-51208050:-|nuORF;ENST00000436958.5_1_22:51207206-51220648:-|nuORF;nc|ENSG00000144134|Q9UNT1|RABL2B;ENSG00000079974|ENST00000691320|RABL2B;nc|ENSG00000144134|Q9UNT1-3|RABL2B	ENST00000465063.5_1_22:51207206-51208050:-|nuORF	ENST00000465063.5_1_22:51207206-51208050:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	414.18017578125	2	414.180132	826.345711	0.8585	0.00035557	-0.89551	-0.0003709	-0.037013	-1.533E-05	414.17967556175427	32.868	0.58487	32.868	32.651	33.236	0					25	11	3	0	0	0	0.69415	1	1472	1472		44.531	0.15388	1	362750			52581	1625	43532	43566	57071	57071					-0.07440803855479317
SEEAKLSLL	9	Unmodified	_SEEAKLSLL_					0	0	0			REV__ENSG00000175820|ENST00000322527|CCDC168	REV__ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	OvCa99_classI_Rep5	1	495.28045654296875	2	495.279315	988.544076	1.5645	0.00077486	0.99383	0.00049222	2.5583	0.0012671	495.2796616710292	79.494	0.79841	79.494	79.276	80.074	0					38	19	4	0	0	0	0.14855	1	8130	8130		85.161	5.4482	1	4120300	+		52582	21918	43533	43567	57072	57072					0.04934617003527819
SEEDDFSKDD	10	Unmodified	_SEEDDFSKDD_					0	0	0			REV__nc|ENSG00000163539|O75122|CLASP2	REV__nc|ENSG00000163539|O75122|CLASP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	592.81005859375	2	593.722755	1185.43096	1.9781	0.0011745	-0.73832	-0.00043836	1.2398	0.00073609	593.7221621285357	118.37	0.75051	118.37	118.06	118.81	0					24	15	2	0	0	0	0.027088	1	13578	13578		19.997	0	1	139280	+		52583	28967	43534	43568	57073	57073					-0.15434147970972845
SEEDLKVLF	9	Unmodified	_SEEDLKVLF_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1;ENST00000586944.5_1_19:807712-810823:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	540.2860107421875	2	540.284597	1078.55464	2.2175	0.0011981	-0.31289	-0.00016905	1.9046	0.001029	540.2844376250076	110.62	0.62363	110.62	110.4	111.02	0					32	13	4	0	0	0	0.014964	1	12565	12565		153.04	48.289	1	1035500			52584	962;14054	43535	43569	57074	57074					0.018505996579506245
SEEDVDNYM	9	Unmodified	_SEEDVDNYM_					0	0	0		ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	MULTI-MSMS	OvCa99_classI_Rep5	1	551.208984375	2	551.205686	1100.39682	-0.16098	-8.8732E-05	3.3595	0.0018518	3.1986	0.0017631	551.2073796039956	71.675	0.49048	71.675	71.466	71.956	0					23	11	3	0	0	0	0.16524	1	6949	6949		82.305	0.064519	1	1361300			52585	1176	43536	43570	57075	57075					-0.1493626766359739
SEEEGQESPGP	11	Unmodified	_SEEEGQESPGP_					0	0	0		ENST00000587086.2_1_19:14183744-14183816:+|nuORF	ENST00000587086.2_1_19:14183744-14183816:+|nuORF	ENST00000587086.2_1_19:14183744-14183816:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.7899169921875	2	573.23329	1144.45203	-0.32648	-0.00018715	4.2609	0.0024425	3.9344	0.0022554	573.2367831742364	30.23	0.29705	30.23	30.086	30.383	0					9	5	3	0	0	0	0.025277	1	1150	1150		26.063	0	1	19655			52586	14056	43537	43571	57076	57076					-0.11442137871449631
SEEEGSSRL	9	Unmodified	_SEEEGSSRL_					0	0	0		YY1AP1-ARHGEF2|2|fusion;YY1AP1-ARHGEF2|3|fusion;YY1AP1-ARHGEF2|1|fusion;YY1AP1-ARHGEF2|14|fusion;YY1AP1-ARHGEF2|13|fusion;YY1AP1-ARHGEF2|8|fusion;YY1AP1-ARHGEF2|7|fusion;YY1AP1-ARHGEF2|16|fusion;YY1AP1-ARHGEF2|15|fusion;YY1AP1-ARHGEF2|4|fusion;YY1AP1-ARHGEF2|6|fusion;YY1AP1-ARHGEF2|5|fusion;YY1AP1-ARHGEF2|12|fusion;YY1AP1-ARHGEF2|11|fusion;YY1AP1-ARHGEF2|10|fusion;YY1AP1-ARHGEF2|9|fusion;ENSG00000116584|ENST00000361247|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;nc|ENSG00000116584|Q92974-3|ARHGEF2	YY1AP1-ARHGEF2|2|fusion	YY1AP1-ARHGEF2|2|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	497.2282409667969	2	497.22781	992.441068	-0.35968	-0.00017885	0.29365	0.00014601	-0.066039	-3.2836E-05	497.2278666841745	35.494	0.69108	35.494	35.293	35.984	0					26	14	3	0	0	0	0.22035	1	1794	1794		72.879	12.585	1	400390			52587	36311	43538	43572	57077	57077					-0.055454954550668845
SEEENDSTTPV	11	Unmodified	_SEEENDSTTPV_					0	0	0		sp|Q6SW37|EP84_HCMVMEarlyphosphoproteinp84OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL112/UL113PE=3SV=1;sp|P17151|EP84_HCMVAEarlyphosphoproteinp84OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL112/UL113PE=1SV=2	sp|Q6SW37|EP84_HCMVMEarlyphosphoproteinp84OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL112/UL113PE=3SV=1	sp|Q6SW37|EP84_HCMVMEarlyphosphoproteinp84OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL112/UL113PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	603.3128051757812	2	604.251679	1206.48881	-0.16156	-9.7625E-05	1.1135	0.00067281	0.9519	0.00057518	604.2519217379491	92.522	0.35586	89.98	89.72	90.076	-2.5425					10	6	2	0	0	0	0.025594	1	8043	8043		41.427	17.904	1	12628			52588	32906	43539	43573	57078	57078					-0.10617886045565683
SEEENSKVEL	10	Unmodified	_SEEENSKVEL_					0	0	0		ENST00000581849.1_1_17:38296801-38318191:+|nuORF;ENST00000418132.7_1_17:38296747-38323177:+|nuORF;ENSG00000108349|ENST00000264645|CASC3	ENST00000581849.1_1_17:38296801-38318191:+|nuORF	ENST00000581849.1_1_17:38296801-38318191:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	582.2778930664062	2	582.274958	1162.53536	-0.80231	-0.00046716	0.57532	0.000335	-0.22698	-0.00013217	582.2751873142901	55.34	0.78783	55.34	54.935	55.723	0					39	18	3	0	0	0	0.0030581	1	4522	4522		168.26	31.99	1	2225800			52589	2647	43540	43574	57079	57079					-0.03940401423596995
SEEEQVMLE	9	Unmodified	_SEEEQVMLE_					0	0	0		ENSG00000186675|ENST00000373359|MAGEE2	ENSG00000186675|ENST00000373359|MAGEE2	ENSG00000186675|ENST00000373359|MAGEE2	MULTI-SECPEP	OvCa9_classI_Rep3	3	547.3280639648438	2	547.239529	1092.46451	-1.1678	-0.00063906	2.1473	0.0011751	0.97947	0.000536	547.2407117079478	94.381	0.65941	92.486	92.204	92.864	-1.8956					23	12	2	0	0	0	0.027247	1	6137	6137		90.37	26.163	1	26237			52590	8356	43541	43575	57080	57080					-0.07802817732749645
SEEEQVMLE	9	Unmodified	_SEEEQVMLE_					0	0	0		ENSG00000186675|ENST00000373359|MAGEE2	ENSG00000186675|ENST00000373359|MAGEE2	ENSG00000186675|ENST00000373359|MAGEE2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.3280029296875	2	547.239529	1092.46451	-1.2598	-0.00068943	1.9358	0.0010593	0.67595	0.0003699	547.2404292774596	95.235	0.50119	92.767	92.511	93.012	-2.4685					14	9	2	0	0	0	0.027247	1	8385	8385		69.628	23.655	1	16824			52591	8356	43541	43575	57081	57081					-0.07802817732749645
SEEERKSW	8	Unmodified	_SEEERKSW_					0	0	0		nc|ENSG00000087266|P78314-3|SH3BP2;ENST00000513020.5_1_4:2824751-2826924:+|nuORF;ENST00000515737.5_1_4:2825262-2835558:+|nuORF;ENSG00000087266|ENST00000503393|SH3BP2;nc|ENSG00000087266|P78314-4|SH3BP2	nc|ENSG00000087266|P78314-3|SH3BP2	nc|ENSG00000087266|P78314-3|SH3BP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.3720092773438	2	525.74617	1049.47779	-0.21852	-0.00011489	3.1876	0.0016759	2.9691	0.001561	525.7476595427149	57.111	0.6889	57.111	56.833	57.522	0					31	15	3	0	0	0	0.028476	1	4788	4788		49.442	20.292	1	1119000			52592	14908	43542	43576	57082	57082					-0.04497198838521399
SEEGGHVVL	9	Unmodified	_SEEGGHVVL_					0	0	0		nc|ENSG00000053747|Q16787-3|LAMA3;ENSG00000053747|ENST00000313654|LAMA3;nc|ENSG00000053747|Q16787-4|LAMA3;nc|ENSG00000053747|Q16787-1|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-MSMS	OvCa99_classI_Rep5	1	463.7337951660156	2	463.732532	925.45051	-0.08233	-3.8179E-05	-0.29444	-0.00013654	-0.37677	-0.00017472	463.7324129702948	56.518	1.9341	56.518	56.178	58.112	0					101	45	5	0	0	0	0.057208	2	4680	4680;4739		114.59	20.579	1	35837000			52593	1200	43543	43577	57083;57084	57083					-0.015196823788983238
SEEGITKSTL	10	Unmodified	_SEEGITKSTL_					0	0	0		ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF	ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF	nc|ENSG00000108312|P17480-2|UBTF	MULTI-MSMS	OvCa99_classI_Rep5	1	532.7783813476562	2	532.777136	1063.53972	0.26157	0.00013936	-0.78987	-0.00042083	-0.5283	-0.00028146	532.7766423084561	58.053	0.87962	58.053	57.65	58.53	0					45	20	4	0	0	0	0.016395	2	4924	4901;4924		152.06	61.691	1	8218400			52594	2645;14948	43544	43578	57085;57086	57086					0.010491077899814627
SEEGLRNAL	9	Unmodified	_SEEGLRNAL_					0	0	0		nc|ENSG00000119705|Q9GZT3-2|SLIRP;ENSG00000119705|ENST00000557342|SLIRP	nc|ENSG00000119705|Q9GZT3-2|SLIRP	nc|ENSG00000119705|Q9GZT3-2|SLIRP	MULTI-MSMS	OvCa99_classI_Rep5	1	494.7578430175781	2	494.756538	987.498523	0.31207	0.0001544	-2.0905	-0.0010343	-1.7784	-0.00087989	494.7559649763466	63.264	1.0778	63.264	62.816	63.894	0					56	26	4	0	0	0	0.1804	1	5686	5686		79.713	7.8351	1	3282300			52595	3387	43545	43579	57087	57087					0.004273915411431517
SEEGLRNAL	9	Unmodified	_SEEGLRNAL_					0	0	0		nc|ENSG00000119705|Q9GZT3-2|SLIRP;ENSG00000119705|ENST00000557342|SLIRP	nc|ENSG00000119705|Q9GZT3-2|SLIRP	nc|ENSG00000119705|Q9GZT3-2|SLIRP	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.75726318359375	2	494.756538	987.498523	1.0956	0.00054208	-1.8586	-0.00091956	-0.76298	-0.00037749	494.7558552135943	67.38	1.0374	63.89	63.344	64.382	-3.4902					54	20	4	0	0	0	0.083631	1	4943	4943		101.6	30.305	1	310280			52596	3387	43545	43579	57088	57088					0.004273915411431517
SEEGLRNAL	9	Unmodified	_SEEGLRNAL_					0	0	0		nc|ENSG00000119705|Q9GZT3-2|SLIRP;ENSG00000119705|ENST00000557342|SLIRP	nc|ENSG00000119705|Q9GZT3-2|SLIRP	nc|ENSG00000119705|Q9GZT3-2|SLIRP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	494.756538	987.498523	1.294	0.00064023	1.5002	0.00074222	2.7942	0.0013824	494.7579365166367	66.089	0.14867	63.393	63.269	63.418	-2.6958	0.064377	0.0028607	NaN	79.713	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8042.4			52597	3387	43545	43579							0.004273915411431517
SEEGLRNAL	9	Unmodified	_SEEGLRNAL_					0	0	0		nc|ENSG00000119705|Q9GZT3-2|SLIRP;ENSG00000119705|ENST00000557342|SLIRP	nc|ENSG00000119705|Q9GZT3-2|SLIRP	nc|ENSG00000119705|Q9GZT3-2|SLIRP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	494.756538	987.498523	0.64959	0.00032139	-0.6926	-0.00034267	-0.043009	-2.1279E-05	494.75601840765665	66.636	0.74604	63.94	63.517	64.263	-2.6958	0.025007	0.00047077	NaN	101.6	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73981			52598	3387	43545	43579							0.004273915411431517
SEEIKKKK	8	Unmodified	_SEEIKKKK_					0	0	0		nc|ENSG00000012048|P38398-8|BRCA1;nc|ENSG00000012048|P38398-4|BRCA1;ENSG00000012048|ENST00000357654|BRCA1;nc|ENSG00000012048|P38398-7|BRCA1;BRCA1|p.Y655Vfs*18|1|0.66|ENSG00000012048|chr17:43093569-43093570|-/T|frameshift_variant;BRCA1|p.D749Vfs*4|1|0.8|ENSG00000012048|chr17:43093285-43093285|T/-|frameshift_variant;BRCA1|p.S1139Ffs*5|1|0.08|ENSG00000012048|chr17:43092116-43092117|-/TATGATTAAA|frameshift_variant;BRCA1|p.R1188Efs*3|1|0.85|ENSG00000012048|chr17:43091968-43091969|CT/-|frameshift_variant;BRCA1|p.N1265Kfs*4|1|0.89|ENSG00000012048|chr17:43091736-43091737|-/TT|frameshift_variant;BRCA1|p.N1268Tfs*3|1|0.45|ENSG00000012048|chr17:43091716-43091728|TTACTGCAGTCAT/-|frameshift_variant;BRCA1|p.G1710Efs*4|1|0.39|ENSG00000012048|chr17:43063897-43063897|C/-|frameshift_variant	nc|ENSG00000012048|P38398-8|BRCA1	nc|ENSG00000012048|P38398-8|BRCA1	MULTI-SECPEP	OvCa9_classI_Rep2	2	494.777099609375	2	495.303124	988.591695	-1.4619	-0.00072411	1.1401	0.00056468	-0.32187	-0.00015943	495.3035764016818	34.61	0.69361	31.9	31.712	32.405	-2.7097					30	13	3	0	0	0	0.028476	1	1375	1375		49.442	7.0454	1	46157			52599	971	43546	43580	57089	57089					0.09694315994374847
SEEKLQILTAL	11	Unmodified	_SEEKLQILTAL_					0	0	0		ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	MULTI-MSMS	OvCa99_classI_Rep5	1	622.86474609375	2	622.85846	1243.70237	1.8241	0.0011362	0.84673	0.00052739	2.6708	0.0016636	622.8586870440671	117.85	0.55542	117.85	117.56	118.11	0					21	11	3	0	0	0	0.32052	1	13505	13505		66.92	5.2289	1	207550			52600	935	43547	43581	57090	57090					0.09026491191980313
SEELVSSC	8	Unmodified	_SEELVSSC_					0	0	0			REV__ENSG00000059588|ENST00000040877|TARBP1	REV__ENSG00000059588|ENST00000040877|TARBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	427.1848449707031	2	427.184026	852.353498	-0.08347	-3.5657E-05	1.8212	0.00077797	1.7377	0.00074231	427.18473763833555	23.102	3.4531	23.102	22.789	26.242	0					126	69	4	0	0	0	0.74971	1	300	300		26.796	1.3459	1	216520	+		52601	16734	43548	43582	57091	57091					-0.07858412650205082
SEEMIKSEL	9	Unmodified	_SEEMIKSEL_					0	0	0		nc|ENSG00000275066|Q9UMZ2-6|SYNRG;nc|ENSG00000275066|Q9UMZ2-9|SYNRG;nc|ENSG00000275066|Q9UMZ2-4|SYNRG;nc|ENSG00000275066|Q9UMZ2-8|SYNRG;nc|ENSG00000275066|Q9UMZ2-3|SYNRG;nc|ENSG00000275066|Q9UMZ2-7|SYNRG;nc|ENSG00000275066|Q9UMZ2-5|SYNRG;ENSG00000275066|ENST00000612223|SYNRG	nc|ENSG00000275066|Q9UMZ2-6|SYNRG	nc|ENSG00000275066|Q9UMZ2-6|SYNRG	MULTI-MSMS	OvCa99_classI_Rep5	1	533.2626953125	2	533.260265	1064.50598	-0.042834	-2.2842E-05	0.032389	1.7272E-05	-0.010445	-5.5699E-06	533.2601696338716	72.973	1.1445	72.973	72.723	73.868	0					57	28	4	0	0	0	0.046778	1	7128	7128		120.87	21.493	1	4996800			52602	9567	43549	43583	57092	57092					-0.02369636973435263
SEENITIKL	9	Unmodified	_SEENITIKL_					0	0	0		nc|ENSG00000095002|P43246-2|MSH2;ENSG00000095002|ENST00000233146|MSH2	nc|ENSG00000095002|P43246-2|MSH2	nc|ENSG00000095002|P43246-2|MSH2	MULTI-MSMS	OvCa99_classI_Rep5	1	523.7920532226562	2	523.790047	1045.56554	1.1855	0.00062095	0.83632	0.00043805	2.0218	0.001059	523.7905032195607	91.233	1.0215	91.233	90.899	91.92	0					75	24	5	0	0	0	0.0072874	1	9806	9806		190.26	23.033	1	14393000			52603	1918	43550	43584	57093	57093					0.04458002032242803
SEEPGHFSL	9	Unmodified	_SEEPGHFSL_					0	0	0		ENSG00000142798|ENST00000374695|HSPG2;HSPG2|p.R2480Gfs*14|1|0.14|ENSG00000142798|chr1:21850049-21850049|G/-|frameshift_variant;HSPG2|p.S2573Afs*18|1|0.18|ENSG00000142798|chr1:21848664-21848664|G/-|frameshift_variant	ENSG00000142798|ENST00000374695|HSPG2	ENSG00000142798|ENST00000374695|HSPG2	MULTI-MSMS	OvCa99_classI_Rep5	1	501.7310791015625	2	501.729989	1001.44543	1.3471	0.00067587	0.6608	0.00033154	2.0079	0.0010074	501.73025661947867	78.976	0.91671	78.976	78.668	79.585	0					67	22	5	0	0	0	0.079296	2	8014	8014;8044		102.77	15.019	1	18368000			52604	4996	43551	43585	57094;57095	57094					-0.055239862415191965
SEEPIYIV	8	Unmodified	_SEEPIYIV_					0	0	0		ENSG00000000938|ENST00000374005|FGR;ENST00000471959.2_1_6:112015889-112017729:-|nuORF;ENST00000467556.1_1_20:36028555-36030207:+|nuORF;ENST00000477066.5_1_20:36025122-36031779:+|nuORF;nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1;ENSG00000197122|ENST00000373578|SRC;nc|ENSG00000197122|P12931-2|SRC;nc|ENSG00000197122|P12931-3|SRC	ENSG00000000938|ENST00000374005|FGR;nc|ENSG00000010810|P06241-3|FYN;ENSG00000197122|ENST00000373578|SRC	nc|ENSG00000010810|P06241-3|FYN	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.2470397949219	2	475.247483	948.480414	-0.48308	-0.00022958	-3.6708	-0.0017445	-4.1539	-0.0019741	475.24558795870615	54.87	1.1747	51.623	51.336	52.511	-3.2474					49	22	3	0	0	0	0.52992	1	3429	3429		74.517	3.2209	1	378940			52605	949;801;8680	43552	43586	57096	57096					0.004112565664172507
SEEQEQPLSP	10	Unmodified	_SEEQEQPLSP_					0	0	0			REV__nc|ENSG00000007516|O94812-7|BAIAP3	REV__nc|ENSG00000007516|O94812-7|BAIAP3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	571.80712890625	2	572.26185	1142.50915	0.36138	0.00020681	-1.974	-0.0011296	-1.6126	-0.00092281	572.2604882129364	89.822	0.95613	87.247	87	87.956	-2.575					36	18	3	0	0	0	0.026867	1	7788	7788		35.152	7.2698	1	40584	+		52606	16437	43553	43587	57097	57097					-0.056406705950848846
SEERAGAPL	9	Unmodified	_SEERAGAPL_					0	0	0		ENSG00000121068|ENST00000240328|TBX2;ENST00000477081.1_1_17:59482609-59483362:+|nuORF	ENSG00000121068|ENST00000240328|TBX2	ENSG00000121068|ENST00000240328|TBX2	MULTI-MSMS	OvCa99_classI_Rep5	1	465.2384033203125	2	465.237981	928.461409	-0.33207	-0.00015449	0.29844	0.00013884	-0.033635	-1.5648E-05	465.23794501452636	48.017	1.3022	48.017	47.638	48.94	0					57	29	3	0	0	0	0.068524	1	3491	3491		108.09	1.08	1	3611700			52607	3469	43554	43588	57098	57098					-0.005682800046201919
SEERFRPSL	9	Unmodified	_SEERFRPSL_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;ENST00000522730.1_1_5:138160461-138163428:+|nuORF;CTNNA1-KDM3B|1|fusion	ENSG00000044115|ENST00000302763|CTNNA1;CTNNA1-KDM3B|1|fusion	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	OvCa9_classI_Rep2	2	560.7898559570312	2	560.790912	1119.56727	0.076238	4.2753E-05	-0.37774	-0.00021183	-0.3015	-0.00016908	560.7906951341574	64.273	2.9179	61.548	60.968	63.886	-2.7245					181	56	6	0	0	0	0.2784	1	4900	4900		65.465	4.4934	1	2758800			52608	1131;693	43555	43589	57099	57099					0.012270558408772558
SEERFRPSL	9	Unmodified	_SEERFRPSL_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;ENST00000522730.1_1_5:138160461-138163428:+|nuORF;CTNNA1-KDM3B|1|fusion	ENSG00000044115|ENST00000302763|CTNNA1;CTNNA1-KDM3B|1|fusion	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.7924194335938	2	560.790912	1119.56727	0.99026	0.00055533	-1.2678	-0.00071096	-0.27752	-0.00015563	560.7902547795154	65.061	2.6294	61.576	61.114	63.744	-3.4854					165	53	6	0	0	0	0.2422	1	4699	4699		69.628	12.907	1	6333200			52609	1131;693	43555	43589	57100	57100					0.012270558408772558
SEERLSSKL	9	Unmodified	_SEERLSSKL_					0	0	0		nc|ENSG00000196118|A1A4V9-3|CFAP119;ENST00000544487.5_1_16:30768799-30770507:-|nuORF;ENST00000537986.1_1_16:30768799-30771803:-|nuORF;nc|ENSG00000196118|A1A4V9-2|CFAP119;ENSG00000196118|ENST00000543610|CFAP119	nc|ENSG00000196118|A1A4V9-3|CFAP119	nc|ENSG00000196118|A1A4V9-3|CFAP119	MULTI-MSMS	OvCa9_classI_Rep3	3	524.7847290039062	2	524.785296	1047.55604	-0.62906	-0.00033012	-1.5946	-0.00083684	-2.2237	-0.001167	524.7841814450373	98.584	1.5412	96.855	96.09	97.631	-1.7295					53	21	3	0	0	0	0.42676	1	6602	6602		49.442	1.7842	1	382370			52610	8564	43556	43590	57101	57101					0.034162337467250836
SEESKTFAMK	10	Unmodified	_SEESKTFAMK_					0	0	0		nc|ENSG00000185532|Q13976-3|PRKG1;ENST00000373975.2_1_10:53822369-54053657:+|nuORF;nc|ENSG00000185532|Q13976|PRKG1;ENSG00000185532|ENST00000373980|PRKG1	nc|ENSG00000185532|Q13976-3|PRKG1	nc|ENSG00000185532|Q13976-3|PRKG1	MULTI-MSMS	OvCa99_classI_Rep5	1	579.2764892578125	2	579.278989	1156.54342	1.0453	0.00060553	-1.7603	-0.0010197	-0.71498	-0.00041417	579.2779182453718	111.8	1.0096	111.8	111.47	112.48	0					38	21	3	0	0	0	0.39718	1	12716	12716		68.846	3.3808	1	398310			52611	8261	43557	43591	57102	57102					-0.028585457078634136
SEESKTFAMK	10	Unmodified	_SEESKTFAMK_					0	0	0		nc|ENSG00000185532|Q13976-3|PRKG1;ENST00000373975.2_1_10:53822369-54053657:+|nuORF;nc|ENSG00000185532|Q13976|PRKG1;ENSG00000185532|ENST00000373980|PRKG1	nc|ENSG00000185532|Q13976-3|PRKG1	nc|ENSG00000185532|Q13976-3|PRKG1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	579.278989	1156.54342	-0.0053724	-3.1121E-06	-2.7139	-0.0015721	-2.7193	-0.0015752	579.2772014714488	111.89	0.93652	111.75	111.47	112.41	-0.13961	0.071137	0.00018723	NaN	68.846	46	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79128			52612	8261	43557	43591							-0.028585457078634136
SEESKTFAMK	10	Unmodified	_SEESKTFAMK_					0	0	0		nc|ENSG00000185532|Q13976-3|PRKG1;ENST00000373975.2_1_10:53822369-54053657:+|nuORF;nc|ENSG00000185532|Q13976|PRKG1;ENSG00000185532|ENST00000373980|PRKG1	nc|ENSG00000185532|Q13976-3|PRKG1	nc|ENSG00000185532|Q13976-3|PRKG1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	579.278989	1156.54342	0.67352	0.00039015	-3.7972	-0.0021996	-3.1237	-0.0018095	579.2766357085416	112.65	0.73701	111.58	111.32	112.05	-1.0753	-0.098947	-0.0010678	NaN	68.846	38	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86830			52613	8261	43557	43591							-0.028585457078634136
SEESRPQSL	9	Unmodified	_SEESRPQSL_					0	0	0		nc|ENSG00000115966|P15336-4|ATF2;nc|ENSG00000115966|P15336-5|ATF2;ENSG00000115966|ENST00000264110|ATF2;nc|ENSG00000115966|P15336-2|ATF2	nc|ENSG00000115966|P15336-4|ATF2	nc|ENSG00000115966|P15336-4|ATF2	MULTI-MSMS	OvCa99_classI_Rep5	1	516.75146484375	2	516.751453	1031.48835	-0.68643	-0.00035471	0.82875	0.00042826	0.14232	7.3545E-05	516.7516647588258	41.352	0.48779	41.352	41.149	41.637	0					23	10	4	0	0	0	0.13326	1	2572	2572		88.177	20.683	1	1121400			52614	3143	43558	43592	57103	57103					-0.026132161840678236
SEEVHWLH	8	Unmodified	_SEEVHWLH_					0	0	0		nc|ENSG00000169398|Q05397-7|PTK2;nc|ENSG00000169398|Q05397|PTK2;nc|ENSG00000169398|Q05397-5|PTK2;ENSG00000169398|ENST00000696786|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	nc|ENSG00000169398|Q05397-7|PTK2	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.8002319335938	2	518.745973	1035.47739	-0.72055	-0.00037378	3.2854	0.0017043	2.5649	0.0013305	518.7455570651064	86.08	0.40179	83.86	83.785	84.187	-2.2204					9	7	2	0	0	0	0.028476	1	5129	5129		33.516	1.5607	1	21152			52615	7005	43559	43593	57104	57104					-0.03892573767711838
SEEVSRSEL	9	Unmodified	_SEEVSRSEL_					0	0	0		nc|ENSG00000064012|Q14790-3|CASP8;nc|ENSG00000064012|Q14790-2|CASP8;ENSG00000064012|ENST00000673742|CASP8;nc|ENSG00000064012|Q14790-4|CASP8;nc|ENSG00000064012|Q14790-9|CASP8;ENST00000471383.5_1_2:202131194-202137540:+|nuORF;nc|ENSG00000064012|Q14790-6|CASP8;nc|ENSG00000064012|Q14790-5|CASP8;nc|ENSG00000064012|Q14790-8|CASP8;nc|ENSG00000064012|Q14790-7|CASP8;ENST00000339403.6_1_2:202123080-202141717:+|nuORF	nc|ENSG00000064012|Q14790-3|CASP8	nc|ENSG00000064012|Q14790-3|CASP8	MULTI-MSMS	OvCa99_classI_Rep5	1	518.2531127929688	2	518.251286	1034.48802	-1.1848	-0.00061402	3.6282	0.0018803	2.4434	0.0012663	518.2530136231903	49.571	1.3072	49.571	49.287	50.594	0					78	29	4	0	0	0	0.03923	1	3751	3751		127.46	33.455	1	4207500			52616	1291	43560	43594	57105	57105					-0.027846359039358504
SEEVVSREV	9	Unmodified	_SEEVVSREV_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	OvCa9_classI_Rep2	2	517.2615356445312	2	517.261653	1032.50875	-0.70103	-0.00036262	0.55947	0.00028939	-0.14157	-7.3226E-05	517.2618096105015	55.951	1.9836	53.147	52.482	54.465	-2.804					83	39	5	0	0	0	0.056671	2	3924	3919;3924		114.89	37.577	1	242630			52617	6091	43561	43595	57106;57107	57107					-0.00620045524260604
SEEVVSREV	9	Unmodified	_SEEVVSREV_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.2634887695312	2	517.261653	1032.50875	-0.386	-0.00019966	0.18303	9.4676E-05	-0.20297	-0.00010499	517.2616234899263	56.225	2.0294	52.931	52.567	54.596	-3.2944					95	39	5	0	0	0	0.0085876	3	3577	3577;3589;3602		176.44	82.438	1	1389900			52618	6091	43561	43595	57108;57109;57110	57108					-0.00620045524260604
SEEVWYRV	8	Unmodified	_SEEVWYRV_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2;nc|ENSG00000196961|O95782|AP2A1;ENSG00000196961|ENST00000354293|AP2A1	nc|ENSG00000183020|O94973-3|AP2A2;nc|ENSG00000196961|O95782|AP2A1	nc|ENSG00000183020|O94973-3|AP2A2	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.2604370117188	2	534.261456	1066.50836	-2.4566	-0.0013125	-2.0526	-0.0010966	-4.5092	-0.0024091	534.2602325774062	108.5	2.1566	106.78	106.37	108.52	-1.7256					88	41	3	0	0	0	0.67745	1	9976	9976		47.916	1.9434	1	501350			52619	8046;8665	43562	43596	57111	57111					-0.022234204534925084
SEFGSKIILL	10	Unmodified	_SEFGSKIILL_					0	0	0		ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-2|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.W1001Afs*3|1|0.12|ENSG00000175216|chr11:46770973-46770974|AG/-|frameshift_variant	ENSG00000175216|ENST00000529230|CKAP5	ENSG00000175216|ENST00000529230|CKAP5	MULTI-MSMS	OvCa99_classI_Rep5	1	553.8275756835938	2	553.826432	1105.63831	2.0409	0.0011303	1.3513	0.00074837	3.3922	0.0018787	553.8271207183794	118.2	0.51411	118.2	117.97	118.49	0					25	10	3	0	0	0	0.55109	1	13550	13550		47.96	5.0953	1	184460			52620	7525	43563	43597	57112	57112					0.08971755825677974
SEFGSKIILL	10	Unmodified	_SEFGSKIILL_					0	0	0		ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-2|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.W1001Afs*3|1|0.12|ENSG00000175216|chr11:46770973-46770974|AG/-|frameshift_variant	ENSG00000175216|ENST00000529230|CKAP5	ENSG00000175216|ENST00000529230|CKAP5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	553.826432	1105.63831	-0.6351	-0.00035173	0.13306	7.3692E-05	-0.50204	-0.00027804	553.8264206702803	118.09	0.89455	117.94	117.64	118.53	-0.14754	0.017776	-0.00045963	NaN	47.96	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47608			52621	7525	43563	43597							0.08971755825677974
SEFGSKIILL	10	Unmodified	_SEFGSKIILL_					0	0	0		ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-2|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5;CKAP5|p.W1001Afs*3|1|0.12|ENSG00000175216|chr11:46770973-46770974|AG/-|frameshift_variant	ENSG00000175216|ENST00000529230|CKAP5	ENSG00000175216|ENST00000529230|CKAP5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	553.826432	1105.63831	-0.47513	-0.00026314	-5.3349	-0.0029546	-5.81	-0.0032178	554.3264587295414	118.71	0.29723	117.68	117.44	117.73	-1.0271	-0.24167	-0.0065162	NaN	47.96	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9205.7			52622	7525	43563	43597							0.08971755825677974
SEFHGEYLF	9	Unmodified	_SEFHGEYLF_					0	0	0			REV__ENST00000534964.6_1_15:52970223-52970710:-|nuORF	REV__ENST00000534964.6_1_15:52970223-52970710:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.2909545898438	2	564.753464	1127.49238	0.78807	0.00044506	1.88	0.0010617	2.668	0.0015068	564.7548185156335	161.92	0.56161	161.92	161.66	162.23	0					20	10	3	0	0	0	0.027462	1	18997	18997		23.042	0	1	64846	+		52623	27278	43564	43598	57113	57113					-0.06627126690386831
SEFILGKSEL	10	Unmodified	_SEFILGKSEL_					0	0	0		nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	MULTI-MSMS	OvCa9_classI_Rep2	2	561.8056030273438	2	561.805697	1121.59684	-0.63981	-0.00035945	-1.0908	-0.00061282	-1.7306	-0.00097227	561.8040496215903	100.66	1.4373	99.833	99.509	100.95	-0.83051					76	28	4	0	0	0	4.5439E-07	6	9207	9203;9207;9213;9219;9225;9231		204.79	19.069	1	679220			52624	4692	43565	43599	57114;57115;57116;57117;57118;57119	57115					0.04090575066334168
SEFILGKSEL	10	Unmodified	_SEFILGKSEL_					0	0	0		nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	561.805697	1121.59684	2.61	0.0014663	-0.45435	-0.00025525	2.1557	0.0012111	561.8053625203329	100.06	0.6702	100.06	99.817	100.49	0	0.11527	5.2002E-05	NaN	204.79	39	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1944700			52625	4692	43565	43599							0.04090575066334168
SEFKAMDSI	9	Unmodified	_SEFKAMDSI_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	OvCa99_classI_Rep5	1	514.24267578125	2	514.241875	1026.4692	1.4991	0.00077091	0.44573	0.00022921	1.9448	0.0010001	514.2419523703584	83.014	0.9344	83.014	82.736	83.671	0					55	21	4	0	0	0	0.018335	2	8608	8608;8635		148.99	38.867	1	8433400			52626	1131	43566	43600	57120;57121	57120					-0.042978887993513126
SEFKAMDSI	9	Unmodified	_SEFKAMDSI_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	OvCa9_classI_Rep3	3	514.2428588867188	2	514.241875	1026.4692	-0.71143	-0.00036584	0.49401	0.00025404	-0.21742	-0.0001118	514.2419830494957	85.43	1.6476	83.21	82.84	84.488	-2.2204					73	32	3	0	0	0	0.021573	2	5023	5023;5030		145.16	51.96	1	758520			52627	1131	43566	43600	57122;57123	57122					-0.042978887993513126
SEFKAMDSI	9	Unmodified	_SEFKAMDSI_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.24267578125	2	514.241875	1026.4692	1.1197	0.00057582	-1.3266	-0.0006822	-0.20688	-0.00010638	514.241036149551	86.002	1.5366	83.356	82.993	84.53	-2.6463					84	30	5	0	0	0	0.043101	3	7260	7251;7260;7275		124.08	39.165	1	707700			52628	1131	43566	43600	57124;57125;57126	57125					-0.042978887993513126
SEFKAMDSI	9	Unmodified	_SEFKAMDSI_					0	0	0		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.241875	1026.4692	-1.436	-0.00073845	1.2391	0.00063719	-0.19692	-0.00010126	514.242377303252	84.77	1.8906	83.224	82.797	84.688	-1.5462	0.023212	0.0010961	NaN	148.99	82	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	295080			52629	1131	43566	43600							-0.042978887993513126
SEFKAMDSI	9	Oxidation (M)	_SEFKAM(Oxidation (M))DSI_		SEFKAM(1)DSI		SEFKAM(150)DSI	0	0	1		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.2406005859375	2	522.239332	1042.46411	-1.0714	-0.00055951	0.46515	0.00024292	-0.60621	-0.00031659	522.2396539279099	66.362	1.914	62.871	62.272	64.186	-3.4902					99	38	4	0	0	0	0.017173	2	4829	4829;4840		150.36	47.588	1	914880			52630	1131	43566	43601	57127;57128	57127		41			-0.055421926619601436
SEFKAMDSI	9	Oxidation (M)	_SEFKAM(Oxidation (M))DSI_		SEFKAM(1)DSI		SEFKAM(93)DSI	0	0	1		ENSG00000044115|ENST00000302763|CTNNA1;nc|ENSG00000044115|P35221-2|CTNNA1;nc|ENSG00000044115|P35221-3|CTNNA1;ENST00000522792.1_1_5:138268134-138269775:+|nuORF	ENSG00000044115|ENST00000302763|CTNNA1	ENSG00000044115|ENST00000302763|CTNNA1	MSMS	OvCa9_classI_Rep4_	4	522.2405395507812	2	522.239332	1042.46411	NaN	NaN	NaN	NaN	NaN	NaN	NaN	66.002	1	62.517	62.017	63.017	-3.4854								0	0	0	0.024829	1	4778	4778		93.143	9.8561	1				52631	1131	43566	43601	57129	57129		41			-0.055421926619601436
SEFKGDLETL	10	Unmodified	_SEFKGDLETL_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;CSDE1|p.Y690*|1|0.04|ENSG00000009307|chr1:114719725-114719725|A/-|frameshift_variant;CSDE1|p.H375Tfs*17|1|0.05|ENSG00000009307|chr1:114730576-114730576|G/-|frameshift_variant	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	OvCa99_classI_Rep5	1	569.7868041992188	2	569.784961	1137.55537	3.7389	0.0021304	-1.6772	-0.00095565	2.0617	0.0011747	569.7840090288207	88.362	1.7191	88.362	87.962	89.681	0					106	41	5	0	0	0	4.4309E-06	3	9394	9372;9394;9425		195.06	42.028	1	51211000			52632	927	43567	43602	57130;57131;57132	57131					-0.00790605692986901
SEFKGDLETL	10	Unmodified	_SEFKGDLETL_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;CSDE1|p.Y690*|1|0.04|ENSG00000009307|chr1:114719725-114719725|A/-|frameshift_variant;CSDE1|p.H375Tfs*17|1|0.05|ENSG00000009307|chr1:114730576-114730576|G/-|frameshift_variant	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	OvCa9_classI_Rep2	2	569.7840576171875	2	569.784961	1137.55537	1.2387	0.00070578	-1.5636	-0.00089093	-0.32495	-0.00018515	569.7839901385843	89.784	2.0599	88.482	87.987	90.047	-1.302					90	40	4	0	0	0	0.017847	7	7931	7901;7906;7913;7919;7924;7931;7937		150.36	34.868	1	777280			52633	927	43567	43602	57133;57134;57135;57136;57137;57138;57139	57138					-0.00790605692986901
SEFKGDLETL	10	Unmodified	_SEFKGDLETL_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;CSDE1|p.Y690*|1|0.04|ENSG00000009307|chr1:114719725-114719725|A/-|frameshift_variant;CSDE1|p.H375Tfs*17|1|0.05|ENSG00000009307|chr1:114730576-114730576|G/-|frameshift_variant	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	OvCa9_classI_Rep3	3	569.7857055664062	2	569.784961	1137.55537	-0.93148	-0.00053074	0.59625	0.00033973	-0.33523	-0.00019101	569.7852898877065	90.468	2.0283	88.387	88.004	90.033	-2.0805					84	39	4	0	0	0	0.010439	7	5626	5612;5615;5620;5626;5632;5639;5646		159.28	43.782	1	1761100			52634	927	43567	43602	57140;57141;57142;57143;57144;57145;57146	57143					-0.00790605692986901
SEFKGDLETL	10	Unmodified	_SEFKGDLETL_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;CSDE1|p.Y690*|1|0.04|ENSG00000009307|chr1:114719725-114719725|A/-|frameshift_variant;CSDE1|p.H375Tfs*17|1|0.05|ENSG00000009307|chr1:114730576-114730576|G/-|frameshift_variant	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	OvCa9_classI_Rep4_	4	569.7855224609375	2	569.784961	1137.55537	-0.024995	-1.4242E-05	-0.37555	-0.00021398	-0.40054	-0.00022822	569.7846909931269	90.945	1.9848	88.37	88.058	90.043	-2.575					90	38	6	0	0	0	0.020903	4	7866	7843;7854;7866;7879		146.79	31.291	1	1448400			52635	927	43567	43602	57147;57148;57149;57150	57149					-0.00790605692986901
SEFLCTLV	8	Unmodified	_SEFLCTLV_					0	0	0			REV__ENSG00000005243|ENST00000621465|COPZ2	REV__ENSG00000005243|ENST00000621465|COPZ2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.2879943847656	2	456.230779	910.447005	-0.20832	-9.5043E-05	2.7331	0.0012469	2.5248	0.0011519	456.23179336562396	93.958	0.75861	91.451	91.212	91.971	-2.5072					19	15	2	0	0	0	0.028476	1	8248	8248		25.45	0	1	16237	+		52636	16396	43568	43603	57151	57151					-0.01180068477117402
SEFLLGVYGIH	11	Unmodified	_SEFLLGVYGIH_					0	0	0		TSC2|p.V179Gfs*16|1|0.05|ENSG00000103197|chr16:2055455-2055456|-/GAGTGTACGGCATACACAC|frameshift_variant	TSC2|p.V179Gfs*16|1|0.05|ENSG00000103197|chr16:2055455-2055456|-/GAGTGTACGGCATACACAC|frameshift_variant	TSC2|p.V179Gfs*16|1|0.05|ENSG00000103197|chr16:2055455-2055456|-/GAGTGTACGGCATACACAC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	617.814208984375	2	617.826963	1233.63937	-1.0999	-0.00067956	3.8062	0.0023516	2.7063	0.001672	617.8292643426374	34.328	0.23687	34.328	34.161	34.398	0					7	4	2	0	0	0	0.025853	1	1632	1632		27.882	16.246	1	26958			52637	36287	43569	43604	57152	57152					0.03189970194580383
SEFLLKLIHI	10	Unmodified	_SEFLLKLIHI_					0	0	0		ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	ENSG00000115760|ENST00000421745|BIRC6	MULTI-SECPEP	OvCa99_classI_Rep5	1	606.8444213867188	2	606.871174	1211.72779	2.2556	0.0013688	-3.6366	-0.0022069	-1.381	-0.00083811	606.8689718961768	99.968	0.70834	99.968	99.736	100.44	0					31	16	3	0	0	0	0.026849	1	11135	11135		32.812	3.6424	1	602210			52638	3125	43570	43605	57153	57153					0.13040010505051214
SEFNDAIVI	9	Unmodified	_SEFNDAIVI_					0	0	0		ENSG00000215041|ENST00000399464|NEURL4;nc|ENSG00000215041|Q96JN8-2|NEURL4	ENSG00000215041|ENST00000399464|NEURL4	ENSG00000215041|ENST00000399464|NEURL4	MSMS	OvCa99_classI_Rep5	1	504.2607421875	2	504.25584	1006.49713	NaN	NaN	NaN	NaN	NaN	NaN	NaN	78.836	1	78.836	78.336	79.336	0								0	0	0	0.16648	1	8011	8011		60.972	0	1				52639	9199	43571	43606	57154	57154					-0.005862425476266253
SEFPIRTL	8	Unmodified	_SEFPIRTL_					0	0	0		ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-2|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	ENSG00000175216|ENST00000529230|CKAP5	ENSG00000175216|ENST00000529230|CKAP5	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.7697448730469	2	481.768917	961.523281	0.71795	0.00034588	-0.91168	-0.00043922	-0.19374	-9.3336E-05	481.7683337496541	96.63	1.459	94.205	93.862	95.321	-2.4256					69	28	4	0	0	0	0.60899	1	8543	8543		62.107	6.6032	1	251470			52640	7525	43572	43607	57155	57155					0.04098071414523474
SEFPIRTL	8	Unmodified	_SEFPIRTL_					0	0	0		ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-2|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	ENSG00000175216|ENST00000529230|CKAP5	ENSG00000175216|ENST00000529230|CKAP5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	481.768917	961.523281	-0.43928	-0.00021163	0.26682	0.00012855	-0.17246	-8.3085E-05	481.7688893787098	95.287	0.99105	94.259	93.972	94.963	-1.0281	0.022469	0.00029481	NaN	62.107	35	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	191920			52641	7525	43572	43607							0.04098071414523474
SEFPIRTL	8	Unmodified	_SEFPIRTL_					0	0	0		ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-2|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	ENSG00000175216|ENST00000529230|CKAP5	ENSG00000175216|ENST00000529230|CKAP5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	481.768917	961.523281	-0.75976	-0.00036603	0.6534	0.00031479	-0.10636	-5.1241E-05	481.7690865873258	96.075	1.2532	94.246	93.731	94.984	-1.8286	0.0093953	0.00066729	NaN	62.107	59	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	269440			52642	7525	43572	43607							0.04098071414523474
SEFPKPQIL	9	Unmodified	_SEFPKPQIL_					0	0	0		nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	MSMS	OvCa9_classI_Rep2	2	529.7966918945312	2	529.797675	1057.5808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.975	1	97.082	96.582	97.582	-0.89305								0	0	0	0.11106	1	8886	8886		69.628	14.863	1				52643	4692	43573	43608	57156	57156					0.054309136201027286
SEFPKPQIL	9	Unmodified	_SEFPKPQIL_					0	0	0		nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	MSMS	OvCa9_classI_Rep2	2	529.7958984375	2	529.797675	1057.5808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.023	1	97.13	96.63	97.63	-0.89305								0	0	0	0.054374	1	8892	8892		77.318	22.553	1				52644	4692	43573	43608	57157	57157					0.054309136201027286
SEFPKPQIL	9	Unmodified	_SEFPKPQIL_					0	0	0		nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	MSMS	OvCa9_classI_Rep2	2	529.7960815429688	2	529.797675	1057.5808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.071	1	97.178	96.678	97.678	-0.89305								0	0	0	0.094478	1	8898	8898		71.877	18.941	1				52645	4692	43573	43608	57158	57158					0.054309136201027286
SEFPKPQIL	9	Unmodified	_SEFPKPQIL_					0	0	0		nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	MSMS	OvCa9_classI_Rep2	2	529.79638671875	2	529.797675	1057.5808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.12	1	97.227	96.727	97.727	-0.89305								0	0	0	0.11106	1	8904	8904		69.628	25.25	1				52646	4692	43573	43608	57159	57159					0.054309136201027286
SEFPKPQIL	9	Unmodified	_SEFPKPQIL_					0	0	0		nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	MULTI-MSMS	OvCa9_classI_Rep3	3	529.7987060546875	2	529.797675	1057.5808	-0.27561	-0.00014602	-0.89255	-0.00047287	-1.1682	-0.00061889	529.7976476280946	98.807	1.6944	97.122	96.135	97.829	-1.685					96	32	4	0	0	0	0.083631	6	6625	6613;6619;6625;6631;6638;6644		101.6	40.207	1	492130			52647	4692	43573	43608	57160;57161;57162;57163;57164;57165	57162					0.054309136201027286
SEFPKPQIL	9	Unmodified	_SEFPKPQIL_					0	0	0		nc|ENSG00000138496|Q8IXQ6-3|PARP9;ENSG00000138496|ENST00000682323|PARP9;nc|ENSG00000138496|Q8IXQ6|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	nc|ENSG00000138496|Q8IXQ6-3|PARP9	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.7965087890625	2	529.797675	1057.5808	-1.3653	-0.00072335	-0.082708	-4.3819E-05	-1.448	-0.00076717	529.7979689161442	99.318	1.8457	96.993	96.126	97.971	-2.3253					101	35	4	0	0	0	0.070405	4	8847	8847;8858;8872;8886		107.01	46.889	1	456980			52648	4692	43573	43608	57166;57167;57168;57169	57166					0.054309136201027286
SEFQKAVKL	9	Unmodified	_SEFQKAVKL_					0	0	0		ENSG00000134109|ENST00000256497|EDEM1;nc|ENSG00000134109|Q92611-2|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	ENSG00000134109|ENST00000256497|EDEM1	MULTI-MSMS	OvCa99_classI_Rep5	1	525.3040771484375	2	525.303124	1048.5917	-0.69686	-0.00036606	0.46908	0.00024641	-0.22778	-0.00011965	525.3032123262007	61.844	0.6216	61.844	61.501	62.122	0					43	14	5	0	0	0	0.11471	1	5474	5474		93.195	18.94	1	2352600			52649	4261	43574	43609	57170	57170					0.06934315994362805
SEFSGDVDSL	10	Unmodified	_SEFSGDVDSL_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;CSDE1|p.Y690*|1|0.04|ENSG00000009307|chr1:114719725-114719725|A/-|frameshift_variant;ENST00000483030.1_1_1:115263111-115268953:-|nuORF	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	OvCa99_classI_Rep5	1	528.2312622070312	2	528.230019	1054.44548	2.0009	0.0010569	0.29962	0.00015827	2.3005	0.0012152	528.2299596117537	100.36	0.79232	100.36	100.11	100.9	0					33	18	3	0	0	0	0.11378	1	11120	11120		110.12	32.802	1	1206200			52650	927	43575	43610	57171	57171					-0.07956031032176725
SEFYKHIVL	9	Unmodified	_SEFYKHIVL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	OvCa99_classI_Rep5	1	568.3124389648438	2	568.310949	1134.60735	2.5351	0.0014407	-0.5547	-0.00031524	1.9804	0.0011255	568.3105915164545	84.408	1.8281	84.408	83.921	85.75	0					114	43	6	0	0	0	0.10363	3	8800	8800;8830;8870		96.19	30.725	1	24029000			52651	4652	43576	43611	57172;57173;57174	57172					0.04542602511401128
SEFYKHIVL	9	Unmodified	_SEFYKHIVL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	OvCa9_classI_Rep2	2	568.3107299804688	2	568.310949	1134.60735	0.54416	0.00030925	-1.4032	-0.00079747	-0.85907	-0.00048822	568.3100643518636	87.052	2.7755	85.621	85.281	88.057	-1.4311					157	55	5	0	0	0	0.10363	11	7581	7569;7575;7581;7587;7593;7599;7605;7613;7620;7626;7633		96.19	37.408	1	1909800			52652	4652	43576	43611	57175;57176;57177;57178;57179;57180;57181;57182;57183;57184;57185	57177					0.04542602511401128
SEFYKHIVL	9	Unmodified	_SEFYKHIVL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	OvCa9_classI_Rep3	3	568.3114013671875	2	568.310949	1134.60735	-0.73828	-0.00041957	0.41387	0.00023521	-0.32441	-0.00018437	568.3111419184698	87.986	2.8177	85.855	85.493	88.311	-2.1309					158	55	5	0	0	0	0.059253	11	5320	5309;5314;5320;5326;5332;5338;5345;5351;5358;5365;5372		113.41	51.338	1	2596800			52653	4652	43576	43611	57186;57187;57188;57189;57190;57191;57192;57193;57194;57195;57196	57188					0.04542602511401128
SEFYKHIVL	9	Unmodified	_SEFYKHIVL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	OvCa9_classI_Rep4_	4	568.3121948242188	2	568.310949	1134.60735	-1.3894	-0.00078961	0.72375	0.00041132	-0.66565	-0.0003783	568.3112508464145	88.404	3.0102	85.802	85.327	88.337	-2.6027					167	56	4	0	0	0	0.10363	7	7560	7536;7548;7560;7572;7585;7598;7612		96.19	31.983	1	1992400			52654	4652	43576	43611	57197;57198;57199;57200;57201;57202;57203	57199					0.04542602511401128
SEFYPHAL	8	Unmodified	_SEFYPHAL_					0	0	0			REV__ENST00000488504.5_1_22:50691832-50695243:-|nuORF	REV__ENST00000488504.5_1_22:50691832-50695243:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	482.7833557128906	2	482.232168	962.449782	-0.31273	-0.00015081	-0.53503	-0.00025801	-0.84777	-0.00040882	482.2323964459305	80.949	1.0192	78.626	78.389	79.408	-2.3226					40	19	5	0	0	0	0.028476	1	4455	4455		12.207	0	1	55992	+		52655	22693	43577	43612	57204	57204					-0.03294477027964149
SEGADGCNL	9	Unmodified	_SEGADGCNL_					0	0	0		nc|ENSG00000002745|Q9UBV4-2|WNT16;ENSG00000002745|ENST00000222462|WNT16	nc|ENSG00000002745|Q9UBV4-2|WNT16	nc|ENSG00000002745|Q9UBV4-2|WNT16	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1717224121094	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.63422	1	1874	1874		27.882	1.1893	1	60065			52656	812	43578	43613	57205	57205					-0.10924467452787212
SEGDNYSATLL	11	Unmodified	_SEGDNYSATLL_					0	0	0		nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-7|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2	MULTI-MSMS	OvCa99_classI_Rep5	1	585.2734375	2	585.269675	1168.5248	1.5814	0.00092557	1.9285	0.0011287	3.5099	0.0020543	585.2707153475881	134.7	1.1208	134.7	134.43	135.55	0					65	24	3	0	0	0	0.29406	1	15678	15678		68.846	10.064	1	629760			52657	15118	43579	43614	57206	57206					-0.0527238407803452
SEGIPVAQPSV	11	Unmodified	_SEGIPVAQPSV_					0	0	0		nc|ENSG00000175662|Q6ZVM7-4|TOM1L2;nc|ENSG00000175662|Q6ZVM7-2|TOM1L2;nc|ENSG00000175662|Q6ZVM7-3|TOM1L2;ENSG00000175662|ENST00000379504|TOM1L2	nc|ENSG00000175662|Q6ZVM7-4|TOM1L2	nc|ENSG00000175662|Q6ZVM7-4|TOM1L2	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.78515625	2	542.287671	1082.56079	-0.47017	-0.00025497	-2.2971	-0.0012457	-2.7673	-0.0015006	542.2865224511231	90.945	2.2534	88.864	88.464	90.717	-2.0805					76	45	4	0	0	0	0.025673	1	5687	5687		65.465	22.601	1	886250			52658	7559	43580	43615	57207	57207					0.02281117889469897
SEGIVEVKL	9	Unmodified	_SEGIVEVKL_					0	0	0		ENSG00000205403|ENST00000394634|CFI	ENSG00000205403|ENST00000394634|CFI	ENSG00000205403|ENST00000394634|CFI	MULTI-MSMS	OvCa99_classI_Rep5	1	487.2822265625	2	487.281857	972.549162	1.4254	0.00069459	0.52354	0.00025511	1.949	0.0009497	487.28202861475404	93.284	1.5017	93.284	92.762	94.264	0					55	35	2	0	0	0	0.035142	1	10126	10126		131.03	43.277	1	16218000			52659	9070	43581	43616	57208	57208					0.06178920866148019
SEGLKRAGHQL	11	Unmodified	_SEGLKRAGHQL_					0	0	0		GLDC|p.L750Tfs*20|1|0.37|ENSG00000178445|chr9:6554727-6554736|GAAGATTTAG/-|frameshift_variant;ENSG00000178445|ENST00000321612|GLDC	GLDC|p.L750Tfs*20|1|0.37|ENSG00000178445|chr9:6554727-6554736|GAAGATTTAG/-|frameshift_variant	GLDC|p.L750Tfs*20|1|0.37|ENSG00000178445|chr9:6554727-6554736|GAAGATTTAG/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	598.332275390625	2	598.330736	1194.64692	0.29163	0.00017449	-0.31849	-0.00019056	-0.026866	-1.6074E-05	598.3303830776196	21.083	0.21294	21.083	20.974	21.187	0					11	5	3	0	0	0	0.68021	1	93	93		36.447	0.82846	1	38942			52660	7758	43582	43617	57209	57209					0.057381225148674275
SEGPAQRVL	9	Unmodified	_SEGPAQRVL_					0	0	0		ENST00000465475.5_1_3:124802831-124839525:-|nuORF;nc|ENSG00000221955|A0AV02-4|SLC12A8;ENST00000479352.5_1_3:124802736-124844777:-|nuORF;nc|ENSG00000221955|A0AV02-3|SLC12A8;ENST00000473262.5_1_3:124802736-124896678:-|nuORF;ENSG00000221955|ENST00000469902|SLC12A8;nc|ENSG00000221955|A0AV02-2|SLC12A8;nc|ENSG00000221955|A0AV02-5|SLC12A8	ENST00000465475.5_1_3:124802831-124839525:-|nuORF	ENST00000465475.5_1_3:124802831-124839525:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	478.76318359375	2	478.761623	955.508694	-0.12491	-5.9802E-05	-0.051996	-2.4894E-05	-0.17691	-8.4695E-05	478.76156481268976	56.339	1.1159	56.339	55.888	57.004	0					56	26	3	0	0	0	0.045281	2	4673	4645;4673		122.18	42.725	1	1676800			52661	9239	43583	43618	57210;57211	57211					0.02915999266383551
SEGPLRPVL	9	Unmodified	_SEGPLRPVL_					0	0	0		ENST00000444273.6_1_6:56954967-57015704:+|nuORF;nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451;nc|ENSG00000112200|Q9Y4E5-4|ZNF451	ENST00000444273.6_1_6:56954967-57015704:+|nuORF	ENST00000444273.6_1_6:56954967-57015704:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	484.2808837890625	2	484.282192	966.549831	-1.5087	-0.00073064	0.71247	0.00034503	-0.79623	-0.0003856	484.28244592926893	85.331	2.3753	83.84	83.406	85.781	-1.4907					89	46	3	0	0	0	0.1804	5	7398	7381;7386;7393;7398;7405		79.713	33.74	1	581990			52662	2885	43584	43619	57212;57213;57214;57215;57216	57215					0.06521760305861335
SEGPLRPVL	9	Unmodified	_SEGPLRPVL_					0	0	0		ENST00000444273.6_1_6:56954967-57015704:+|nuORF;nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451;nc|ENSG00000112200|Q9Y4E5-4|ZNF451	ENST00000444273.6_1_6:56954967-57015704:+|nuORF	ENST00000444273.6_1_6:56954967-57015704:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	484.28240966796875	2	484.282192	966.549831	-1.3571	-0.00065723	0.80731	0.00039096	-0.54983	-0.00026627	484.2825094917655	85.864	1.4052	83.644	83.335	84.74	-2.2204					53	27	2	0	0	0	0.14998	2	5084	5077;5084		84.916	29.411	1	1109900			52663	2885	43584	43619	57217;57218	57218					0.06521760305861335
SEGPLRPVL	9	Unmodified	_SEGPLRPVL_					0	0	0		ENST00000444273.6_1_6:56954967-57015704:+|nuORF;nc|ENSG00000112200|Q9Y4E5-2|ZNF451;ENSG00000112200|ENST00000370706|ZNF451;nc|ENSG00000112200|Q9Y4E5-4|ZNF451	ENST00000444273.6_1_6:56954967-57015704:+|nuORF	ENST00000444273.6_1_6:56954967-57015704:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.28192138671875	2	484.282192	966.549831	1.0693	0.00051784	-3.1286	-0.0015151	-2.0593	-0.00099727	484.28052383722854	86.463	1.7409	83.836	83.512	85.253	-2.6269					66	34	3	0	0	0	0.10363	4	7323	7310;7323;7335;7347		96.19	24.813	1	1081500			52664	2885	43584	43619	57219;57220;57221;57222	57220					0.06521760305861335
SEGTFGIHV	9	Unmodified	_SEGTFGIHV_					0	0	0		nc|ENSG00000088888|Q7Z434-4|MAVS;ENSG00000088888|ENST00000428216|MAVS	nc|ENSG00000088888|Q7Z434-4|MAVS	nc|ENSG00000088888|Q7Z434-4|MAVS	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.7359924316406	2	473.735074	945.455596	0.97922	0.00046389	-0.87976	-0.00041677	0.099466	4.712E-05	473.7344568042096	90.158	1.1188	87.583	87.298	88.417	-2.575					57	21	4	0	0	0	0.057208	1	7756	7756		114.59	29.226	1	326120			52665	1797	43585	43620	57223	57223					-0.019313785162808017
SEGTFGIHV	9	Unmodified	_SEGTFGIHV_					0	0	0		nc|ENSG00000088888|Q7Z434-4|MAVS;ENSG00000088888|ENST00000428216|MAVS	nc|ENSG00000088888|Q7Z434-4|MAVS	nc|ENSG00000088888|Q7Z434-4|MAVS	MULTI-MATCH	OvCa9_classI_Rep2	2		2	473.735074	945.455596	1.6323	0.00077326	-1.5371	-0.00072816	0.095202	4.51E-05	473.73419269199053	89.04	1.2855	87.672	87.329	88.615	-1.3676	0.064983	-0.00060031	NaN	114.59	69	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171410			52666	1797	43585	43620							-0.019313785162808017
SEGTFGIHV	9	Unmodified	_SEGTFGIHV_					0	0	0		nc|ENSG00000088888|Q7Z434-4|MAVS;ENSG00000088888|ENST00000428216|MAVS	nc|ENSG00000088888|Q7Z434-4|MAVS	nc|ENSG00000088888|Q7Z434-4|MAVS	MULTI-MATCH	OvCa9_classI_Rep3	3		2	473.735074	945.455596	0.21926	0.00010387	-0.1986	-9.4083E-05	0.020658	9.7863E-06	473.7347759483212	89.647	1.3794	87.567	87.239	88.619	-2.0805	-0.040339	0.00066785	NaN	114.59	73	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	321370			52667	1797	43585	43620							-0.019313785162808017
SEHAVNKQL	9	Unmodified	_SEHAVNKQL_					0	0	0		ENSG00000166595|ENST00000422424|CIAO2B;ENST00000562362.5_1_16:66966108-66968009:-|nuORF	ENSG00000166595|ENST00000422424|CIAO2B	ENSG00000166595|ENST00000422424|CIAO2B	MULTI-MSMS	OvCa99_classI_Rep5	1	513.2723388671875	2	513.272355	1024.53016	-0.0042117	-2.1618E-06	-0.51359	-0.00026361	-0.5178	-0.00026577	513.2719794236341	31.927	0.54597	31.927	31.608	32.154	0					26	10	4	0	0	0	0.22621	1	1352	1352		71.877	13.096	1	235790			52668	6696	43586	43621	57224	57224					0.01887384295105221
SEHGEKLYL	9	Unmodified	_SEHGEKLYL_					0	0	0		ENSG00000071051|ENST00000233154|NCK2	ENSG00000071051|ENST00000233154|NCK2	ENSG00000071051|ENST00000233154|NCK2	MULTI-MSMS	OvCa99_classI_Rep5	1	538.2760620117188	2	538.274564	1074.53457	-0.4455	-0.0002398	0.29623	0.00015945	-0.14928	-8.0351E-05	538.2745421865816	55.365	0.69699	55.365	55.107	55.804	0					35	16	3	0	0	0	0.26076	1	4524	4524		67.494	16.158	1	1488800			52669	1443	43587	43622	57225	57225					0.0002884871798869426
SEHPDQAQAIL	11	Unmodified	_SEHPDQAQAIL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OvCa99_classI_Rep5	1	604.8001098632812	2	604.798934	1207.58332	-0.29786	-0.00018014	0.64691	0.00039125	0.34905	0.0002111	604.7992070165537	69.61	0.82242	69.61	69.347	70.17	0					47	19	4	0	0	0	0.36705	1	6625	6625		63.534	6.8128	1	3733900			52670	3083	43588	43623	57226	57226					-0.012172827129006691
SEHRLSNKL	9	Unmodified	_SEHRLSNKL_					0	0	0		ENSG00000104960|ENST00000391842|PTOV1;nc|ENSG00000104960|Q86YD1-2|PTOV1;ENST00000601501.5_1_19:50354350-50358367:+|nuORF;ENST00000598632.5_1_19:50354098-50358367:+|nuORF;ENST00000602040.5_1_19:50354666-50357992:+|nuORF	ENSG00000104960|ENST00000391842|PTOV1	ENSG00000104960|ENST00000391842|PTOV1	MULTI-MSMS	OvCa99_classI_Rep5	1	542.298583984375	2	542.298904	1082.58326	0.048661	2.6389E-05	0.24596	0.00013338	0.29462	0.00015977	542.2987359602015	32.114	0.64609	32.114	31.857	32.503	0					41	12	5	0	0	0	0.34132	1	1369	1369		58.23	10.573	1	563920			52671	2411	43589	43624	57227	57227					0.04526762077762214
SEIALLQSRL	10	Unmodified	_SEIALLQSRL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;RPN1|p.K538E|1|0.06|ENSG00000163902|chr3:128622193-128622193|T/C|missense_variant	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.3335571289062	2	565.332413	1128.65027	-1.2243	-0.00069213	-0.040707	-2.3013E-05	-1.265	-0.00071514	565.3321537187825	108.13	1.346	106.27	105.95	107.3	-1.8518					29	16	3	0	0	0	0.45953	2	9894	9894;9904		59.931	8.7381	1	96272			52672	6376	43590	43625	57228;57229	57228					0.09109372568855179
SEIDTNQNSL	10	Unmodified	_SEIDTNQNSL_					0	0	0		nc|ENSG00000153071|P98082-3|DAB2;ENSG00000153071|ENST00000320816|DAB2;DAB2|p.S313Ffs*14|1|0.1|ENSG00000153071|chr5:39383023-39383024|-/G|frameshift_variant	nc|ENSG00000153071|P98082-3|DAB2	nc|ENSG00000153071|P98082-3|DAB2	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.760986328125	2	560.759475	1119.5044	0.52712	0.00029559	-1.2118	-0.00067954	-0.68471	-0.00038396	560.7587491740926	73.934	1.2921	70.704	70.386	71.678	-3.2308					69	26	4	0	0	0	1.8227E-06	1	5759	5759		199.89	67.133	1	842520			52673	5659	43591	43626	57230	57230					-0.050575547378457486
SEIEKTYVL	9	Unmodified	_SEIEKTYVL_					0	0	0		tr|A0A553SRF2|A0A553SRF2_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00965PE=4SV=1	tr|A0A553SRF2|A0A553SRF2_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00965PE=4SV=1	tr|A0A553SRF2|A0A553SRF2_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00965PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.807373046875	2	541.292422	1080.57029	2.3622	0.0012787	-1.2405	-0.0006715	1.1217	0.00060716	541.2924648617445	95.871	0.38263	95.871	95.785	96.168	0					9	8	2	0	0	0	0.027462	1	10496	10496		51.335	6.8044	1	106720			52674	34258	43592	43627	57231	57231					0.03322886175010353
SEIEQAVQSL	10	Unmodified	_SEIEQAVQSL_					0	0	0		ENSG00000136950|ENST00000353214|ARPC5L	ENSG00000136950|ENST00000353214|ARPC5L	ENSG00000136950|ENST00000353214|ARPC5L	MULTI-MSMS	OvCa9_classI_Rep3	3	552.2826538085938	2	552.282586	1102.55062	0.43699	0.00024134	-0.84707	-0.00046782	-0.41007	-0.00022648	552.2819985867801	110.96	0.95268	109.86	109.55	110.5	-1.1038					50	18	4	0	0	0	0.11648	3	8036	8029;8036;8042		109.44	16.296	1	219550			52675	4543	43593	43628	57232;57233;57234	57233					0.0034451016424554837
SEIEQAVQSL	10	Unmodified	_SEIEQAVQSL_					0	0	0		ENSG00000136950|ENST00000353214|ARPC5L	ENSG00000136950|ENST00000353214|ARPC5L	ENSG00000136950|ENST00000353214|ARPC5L	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.2818603515625	2	552.282586	1102.55062	0.48105	0.00026568	-0.10898	-6.0187E-05	0.37207	0.00020549	552.2826033777635	111.43	1.1585	109.92	109.63	110.79	-1.5111					59	21	4	0	0	0	0.16457	2	10275	10275;10289		99.788	18.263	1	232240			52676	4543	43593	43628	57235;57236	57235					0.0034451016424554837
SEIEVPREAL	10	Unmodified	_SEIEVPREAL_					0	0	0		nc|ENSG00000100918|O95072-2|REC8;ENSG00000100918|ENST00000611366|REC8	nc|ENSG00000100918|O95072-2|REC8	nc|ENSG00000100918|O95072-2|REC8	MULTI-MSMS	OvCa9_classI_Rep2	2	571.8058471679688	2	571.806228	1141.5979	0.96873	0.00055392	-1.3374	-0.00076471	-0.36864	-0.00021079	571.8054217274225	89.477	1.8798	88.175	87.691	89.571	-1.302					127	37	5	0	0	0	0.094891	8	7876	7853;7858;7863;7869;7876;7882;7888;7895		114.89	29.802	1	1140700			52677	2122	43594	43629	57237;57238;57239;57240;57241;57242;57243;57244	57241					0.03276789435244609
SEIEVPREAL	10	Unmodified	_SEIEVPREAL_					0	0	0		nc|ENSG00000100918|O95072-2|REC8;ENSG00000100918|ENST00000611366|REC8	nc|ENSG00000100918|O95072-2|REC8	nc|ENSG00000100918|O95072-2|REC8	MULTI-MSMS	OvCa9_classI_Rep3	3	571.806396484375	2	571.806228	1141.5979	-1.0141	-0.00057984	0.69566	0.00039778	-0.3184	-0.00018206	571.8065418779107	90.155	1.8847	88.075	87.592	89.477	-2.0805					116	36	7	0	0	0	0.10472	6	5597	5568;5572;5584;5591;5597;5606		112.41	29.726	1	2048900			52678	2122	43594	43629	57245;57246;57247;57248;57249;57250	57249					0.03276789435244609
SEIEVPREAL	10	Unmodified	_SEIEVPREAL_					0	0	0		nc|ENSG00000100918|O95072-2|REC8;ENSG00000100918|ENST00000611366|REC8	nc|ENSG00000100918|O95072-2|REC8	nc|ENSG00000100918|O95072-2|REC8	MULTI-MSMS	OvCa9_classI_Rep4_	4	571.8074340820312	2	571.806228	1141.5979	-0.092548	-5.292E-05	-0.21324	-0.00012193	-0.30579	-0.00017485	571.8060449907583	90.555	1.7834	87.98	87.65	89.433	-2.575					116	34	4	0	0	0	0.073842	4	7800	7800;7812;7825;7838		120.31	40.64	1	1782900			52679	2122	43594	43629	57251;57252;57253;57254	57251					0.03276789435244609
SEIISELVQ	9	Unmodified	_SEIISELVQ_					0	0	0		ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	ENSG00000179163|ENST00000374479|FUCA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.7594299316406	2	509.276772	1016.53899	2.4446	0.001245	-0.14343	-7.3048E-05	2.3012	0.001172	509.2768429363192	88.916	0.76721	88.916	88.467	89.235	0					42	18	4	0	0	0	0.027462	1	9478	9478		26.693	6.6961	1	1905400			52680	7808	43595	43630	57255	57255					0.03138313140914306
SEIKGEVLYL	10	Unmodified	_SEIKGEVLYL_					0	0	0		nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-5|OS9;ENST00000553208.5_1_12:58087944-58109621:+|nuORF	nc|ENSG00000135506|Q13438-4|OS9	nc|ENSG00000135506|Q13438-4|OS9	MULTI-MSMS	OvCa99_classI_Rep5	1	575.823486328125	2	575.821347	1149.62814	1.8617	0.001072	0.4995	0.00028762	2.3612	0.0013596	575.821520288576	100.35	0.58305	100.35	100.07	100.65	0					40	13	4	0	0	0	0.18931	1	11123	11123		96.034	38.222	1	4436500			52681	4384	43596	43631	57256	57256					0.05931148100444261
SEIKGEVLYL	10	Unmodified	_SEIKGEVLYL_					0	0	0		nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-5|OS9;ENST00000553208.5_1_12:58087944-58109621:+|nuORF	nc|ENSG00000135506|Q13438-4|OS9	nc|ENSG00000135506|Q13438-4|OS9	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8198852539062	2	575.821347	1149.62814	-1.8597	-0.0010709	1.0855	0.00062508	-0.77417	-0.00044578	575.8217627950467	101.16	1.5856	100.39	100.02	101.61	-0.76401					77	31	4	0	0	0	0.45953	1	9277	9277		59.931	5.1661	1	319230			52682	4384	43596	43631	57257	57257					0.05931148100444261
SEIKGEVLYL	10	Unmodified	_SEIKGEVLYL_					0	0	0		nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-5|OS9;ENST00000553208.5_1_12:58087944-58109621:+|nuORF	nc|ENSG00000135506|Q13438-4|OS9	nc|ENSG00000135506|Q13438-4|OS9	MULTI-MSMS	OvCa9_classI_Rep3	3	575.82080078125	2	575.821347	1149.62814	-1.4276	-0.00082203	1.2103	0.00069694	-0.21723	-0.00012509	575.8217900967206	101.92	1.8305	100.4	99.898	101.73	-1.5211					92	34	4	0	0	0	0.41036	2	6986	6986;6992		66.962	6.5583	1	461040			52683	4384	43596	43631	57258;57259	57258					0.05931148100444261
SEIKGEVLYL	10	Unmodified	_SEIKGEVLYL_					0	0	0		nc|ENSG00000135506|Q13438-4|OS9;ENSG00000135506|ENST00000315970|OS9;nc|ENSG00000135506|Q13438-8|OS9;nc|ENSG00000135506|Q13438-3|OS9;nc|ENSG00000135506|Q13438-2|OS9;nc|ENSG00000135506|Q13438-7|OS9;nc|ENSG00000135506|Q13438-5|OS9;ENST00000553208.5_1_12:58087944-58109621:+|nuORF	nc|ENSG00000135506|Q13438-4|OS9	nc|ENSG00000135506|Q13438-4|OS9	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.821044921875	2	575.821347	1149.62814	-0.53993	-0.0003109	0.25435	0.00014646	-0.28558	-0.00016444	575.8213366276692	102.55	1.3596	100.35	100.1	101.46	-2.1994					72	25	4	0	0	0	0.44722	2	9242	9230;9242		61.691	12.48	1	373490			52684	4384	43596	43631	57260;57261	57261					0.05931148100444261
SEIKNAVKL	9	Unmodified	_SEIKNAVKL_					0	0	0			REV__nc|ENSG00000163564|Q6K0P9-3|PYHIN1	REV__nc|ENSG00000163564|Q6K0P9-3|PYHIN1	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.2790832519531	2	501.303124	1000.5917	1.2427	0.00062296	-1.865	-0.00093494	-0.62235	-0.00031199	501.30210825924433	89.248	0.74179	87.88	87.625	88.367	-1.3676					22	14	2	0	0	0	0.027295	1	7878	7878		74.255	12.148	1	31072	+		52685	20854	43597	43632	57262	57262					0.09142315994370165
SEIKVPDVEL	10	Unmodified	_SEIKVPDVEL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant;AHNAK|p.P895Cfs*7|1|0.12|ENSG00000124942|chr11:62531725-62531735|CCACTTCTGGG/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa99_classI_Rep5	1	564.812255859375	2	564.810979	1127.6074	1.934	0.0010924	2.4479	0.0013826	4.3819	0.0024749	564.811034538976	108.95	1.5512	108.95	108.67	110.22	0					54	34	2	0	0	0	0.12738	1	12347	12347		106.68	16.082	1	6321500			52686	3687	43598	43633	57263	57263					0.048705577207556416
SEIKVPDVEL	10	Unmodified	_SEIKVPDVEL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant;AHNAK|p.P895Cfs*7|1|0.12|ENSG00000124942|chr11:62531725-62531735|CCACTTCTGGG/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep2	2	564.8104858398438	2	564.810979	1127.6074	0.23434	0.00013236	-0.67778	-0.00038282	-0.44345	-0.00025046	564.8104715817303	108.24	1.6306	108.02	107.58	109.21	-0.22498					83	32	5	0	0	0	0.042975	5	10133	10128;10133;10138;10147;10153		131.62	32.241	1	611690			52687	3687	43598	43633	57264;57265;57266;57267;57268	57265					0.048705577207556416
SEIKVPDVEL	10	Unmodified	_SEIKVPDVEL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant;AHNAK|p.P895Cfs*7|1|0.12|ENSG00000124942|chr11:62531725-62531735|CCACTTCTGGG/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep3	3	564.8104248046875	2	564.810979	1127.6074	-0.31551	-0.0001782	0.011368	6.4208E-06	-0.30414	-0.00017178	564.8108195330072	108.99	1.565	107.8	107.41	108.98	-1.1978					79	29	4	0	0	0	0.025401	7	7812	7802;7806;7812;7818;7824;7831;7838		141.52	31.992	1	690010			52688	3687	43598	43633	57269;57270;57271;57272;57273;57274;57275	57271					0.048705577207556416
SEIKVPDVEL	10	Unmodified	_SEIKVPDVEL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant;AHNAK|p.P895Cfs*7|1|0.12|ENSG00000124942|chr11:62531725-62531735|CCACTTCTGGG/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.8118286132812	2	564.810979	1127.6074	1.1343	0.00064069	-1.2378	-0.00069912	-0.10345	-5.8432E-05	564.8100500057338	109.48	1.6202	107.75	107.38	109	-1.7256					83	30	4	0	0	0	0.072307	3	10071	10036;10047;10071		120.87	25.053	1	731720			52689	3687	43598	43633	57276;57277;57278	57278					0.048705577207556416
SEILDGNQL	9	Unmodified	_SEILDGNQL_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;CSDE1|p.Y690*|1|0.04|ENSG00000009307|chr1:114719725-114719725|A/-|frameshift_variant	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	OvCa99_classI_Rep5	1	494.7514953613281	2	494.750921	987.48729	2.2407	0.0011086	-0.30047	-0.00014866	1.9402	0.00095992	494.7506492887637	97.117	0.90126	97.117	96.795	97.696	0					47	20	5	0	0	0	0.002835	2	10672	10649;10672		231.3	96.487	1	2913000			52690	927	43599	43634	57279;57280	57280					-0.006954305530030069
SEILKGEKP	9	Unmodified	_SEILKGEKP_					0	0	0		nc|ENSG00000073060|Q8WTV0-4|SCARB1;ENST00000535005.5_1_12:125267231-125351555:-|nuORF;nc|ENSG00000073060|Q8WTV0-5|SCARB1;ENSG00000073060|ENST00000261693|SCARB1;nc|ENSG00000073060|Q8WTV0|SCARB1	nc|ENSG00000073060|Q8WTV0-4|SCARB1	nc|ENSG00000073060|Q8WTV0-4|SCARB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.7806091308594	2	500.787307	999.560061	0.12046	6.0324E-05	-0.41065	-0.00020565	-0.29019	-0.00014532	500.78680554882175	45.211	0.52216	45.211	44.932	45.454	0					12	7	2	0	0	0	0.027453	1	3098	3098		30.318	0	1	432780			52691	1486	43600	43635	57281	57281					0.06026323240428155
SEILKQFTL	9	Unmodified	_SEILKQFTL_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;ZNFX1|p.V1053Afs*12|1|0.06|ENSG00000124201|chr20:49252778-49252779|-/TCTCGGCTCACTGCAACCACCG|frameshift_variant;nc|ENSG00000124201|Q9P2E3-2|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	OvCa9_classI_Rep4_	4	539.8131103515625	2	539.810782	1077.60701	-0.46301	-0.00024994	0.14219	7.6758E-05	-0.32081	-0.00017318	539.810479864007	112.1	1.0798	110.59	110.26	111.34	-1.5111					73	20	5	0	0	0	0.16264	1	10343	10343		82.75	0	1	150830			52692	3631	43601	43636	57282	57282					0.07131182791590618
SEILLPMLL	9	Oxidation (M)	_SEILLPM(Oxidation (M))LL_		SEILLPM(1)LL		SEILLPM(100)LL	0	0	1		ENSG00000180043|ENST00000424985|GARIN5B	ENSG00000180043|ENST00000424985|GARIN5B	ENSG00000180043|ENST00000424985|GARIN5B	MULTI-MSMS	OvCa9_classI_Rep2	2	522.8058471679688	2	522.804111	1043.59367	0.29647	0.000155	3.3297	0.0017408	3.6262	0.0018958	522.805756073572	93.382	1.3396	92.214	91.498	92.837	-1.168					68	25	4	0	0	0	0.085069	1	8345	8345		101.21	8.0683	1	430480			52693	7853	43602	43637	57283	57283		236			0.07361608687961052
SEINEQNLL	9	Unmodified	_SEINEQNLL_					0	0	0			REV__nc|ENSG00000138778|Q02224-3|CENPE	REV__nc|ENSG00000138778|Q02224-3|CENPE	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.3070068359375	2	530.269478	1058.5244	-0.4921	-0.00026094	-3.3812	-0.001793	-3.8733	-0.0020539	530.2674423639733	55.027	0.34547	55.027	54.805	55.15	0					10	7	2	0	0	0	0.027164	1	4452	4452		90.777	8.4716	1	108870	+		52694	19572	43603	43638	57284	57284					-0.0025175900723297673
SEIPEQGP	8	Unmodified	_SEIPEQGP_					0	0	0		nc|ENSG00000177076|Q5QJU3-2|ACER2;ENSG00000177076|ENST00000340967|ACER2	nc|ENSG00000177076|Q5QJU3-2|ACER2	nc|ENSG00000177076|Q5QJU3-2|ACER2	MULTI-MSMS	OvCa99_classI_Rep5	1	428.7075500488281	2	428.705983	855.397412	-0.42023	-0.00018016	0.080564	3.4538E-05	-0.33967	-0.00014562	428.70590864308497	59.704	1.1449	59.704	59.414	60.559	0					75	28	4	0	0	0	0.33245	2	5149	5149;5179		101.21	0	1	11390000			52695	7655	43604	43639	57285;57286	57285					-0.036070601615620035
SEIQNNISL	9	Unmodified	_SEIQNNISL_					0	0	0		nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2;nc|ENSG00000170921|Q9HCD6-3|TANC2;nc|ENSG00000170921|Q9HCD6-4|TANC2	nc|ENSG00000170921|Q9HCD6|TANC2	nc|ENSG00000170921|Q9HCD6|TANC2	MULTI-MSMS	OvCa99_classI_Rep5	1	509.2662658691406	2	509.264196	1016.51384	2.5951	0.0013216	-0.93472	-0.00047602	1.6604	0.00084558	509.2637852728496	96.046	0.75992	96.046	95.699	96.459	0					26	17	2	0	0	0	0.17606	1	10507	10507		80.455	5.4113	1	673570			52696	7153	43605	43640	57287	57287					0.006242583383254896
SEIQVLEHL	9	Unmodified	_SEIQVLEHL_					0	0	0		ENST00000461981.5_1_2:201722417-201724542:-|nuORF;ENST00000519132.5_1_5:178032378-178044013:-|nuORF;ENST00000522136.5_1_5:178032355-178045581:-|nuORF;ENST00000519583.5_1_5:178030620-178044013:-|nuORF;ENST00000473565.5_1_2:201718031-201724542:-|nuORF;ENST00000520878.5_1_5:178030620-178044471:-|nuORF;ENSG00000113240|ENST00000316308|CLK4;ENSG00000013441|ENST00000321356|CLK1;nc|ENSG00000013441|P49759-3|CLK1	ENST00000461981.5_1_2:201722417-201724542:-|nuORF	ENST00000461981.5_1_2:201722417-201724542:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	534.2883911132812	2	534.290214	1066.56587	1.535	0.00082013	0.73551	0.00039297	2.2705	0.0012131	534.2904510668245	105.86	0.78912	105.86	105.62	106.41	0					35	17	3	0	0	0	0.10421	1	11904	11904		96.034	29.604	1	1811700			52697	986	43606	43641	57288	57288					0.03525421752101465
SEIQVLEHL	9	Unmodified	_SEIQVLEHL_					0	0	0		ENST00000461981.5_1_2:201722417-201724542:-|nuORF;ENST00000519132.5_1_5:178032378-178044013:-|nuORF;ENST00000522136.5_1_5:178032355-178045581:-|nuORF;ENST00000519583.5_1_5:178030620-178044013:-|nuORF;ENST00000473565.5_1_2:201718031-201724542:-|nuORF;ENST00000520878.5_1_5:178030620-178044471:-|nuORF;ENSG00000113240|ENST00000316308|CLK4;ENSG00000013441|ENST00000321356|CLK1;nc|ENSG00000013441|P49759-3|CLK1	ENST00000461981.5_1_2:201722417-201724542:-|nuORF	ENST00000461981.5_1_2:201722417-201724542:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	534.290214	1066.56587	-1.1701	-0.00062517	0.91299	0.0004878	-0.2571	-0.00013737	534.2904930601738	106	1.2473	105.56	104.9	106.15	-0.43642	-0.067602	0.00019262	NaN	96.034	48	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76144			52698	986	43606	43641							0.03525421752101465
SEIQVLEHL	9	Unmodified	_SEIQVLEHL_					0	0	0		ENST00000461981.5_1_2:201722417-201724542:-|nuORF;ENST00000519132.5_1_5:178032378-178044013:-|nuORF;ENST00000522136.5_1_5:178032355-178045581:-|nuORF;ENST00000519583.5_1_5:178030620-178044013:-|nuORF;ENST00000473565.5_1_2:201718031-201724542:-|nuORF;ENST00000520878.5_1_5:178030620-178044471:-|nuORF;ENSG00000113240|ENST00000316308|CLK4;ENSG00000013441|ENST00000321356|CLK1;nc|ENSG00000013441|P49759-3|CLK1	ENST00000461981.5_1_2:201722417-201724542:-|nuORF	ENST00000461981.5_1_2:201722417-201724542:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	534.290214	1066.56587	1.1199	0.00059836	-2.4632	-0.0013161	-1.3433	-0.0007177	534.2887550804361	106.84	1.0913	105.57	105.27	106.36	-1.267	-0.05516	-0.0034151	NaN	96.034	33	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102250			52699	986	43606	43641							0.03525421752101465
SEIQVLEHL	9	Unmodified	_SEIQVLEHL_					0	0	0		ENST00000461981.5_1_2:201722417-201724542:-|nuORF;ENST00000519132.5_1_5:178032378-178044013:-|nuORF;ENST00000522136.5_1_5:178032355-178045581:-|nuORF;ENST00000519583.5_1_5:178030620-178044013:-|nuORF;ENST00000473565.5_1_2:201718031-201724542:-|nuORF;ENST00000520878.5_1_5:178030620-178044471:-|nuORF;ENSG00000113240|ENST00000316308|CLK4;ENSG00000013441|ENST00000321356|CLK1;nc|ENSG00000013441|P49759-3|CLK1	ENST00000461981.5_1_2:201722417-201724542:-|nuORF	ENST00000461981.5_1_2:201722417-201724542:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	534.290214	1066.56587	-2.6624	-0.0014225	2.377	0.00127	-0.2854	-0.00015249	534.2913382577844	107.4	0.89218	105.52	105.22	106.12	-1.8785	-0.10926	0.001757	NaN	96.034	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109470			52700	986	43606	43641							0.03525421752101465
SEISFYDVI	9	Unmodified	_SEISFYDVI_					0	0	0		tr|A0A7D7A0F7|A0A7D7A0F7_9CLOTRrf2familytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_09795PE=4SV=1	tr|A0A7D7A0F7|A0A7D7A0F7_9CLOTRrf2familytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_09795PE=4SV=1	tr|A0A7D7A0F7|A0A7D7A0F7_9CLOTRrf2familytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_09795PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.302490234375	2	536.763497	1071.51244	-0.7683	-0.00041239	-2.7499	-0.001476	-3.5182	-0.0018884	536.7618376287903	56.462	1.1651	53.167	52.769	53.934	-3.2944					68	22	5	0	0	0	0.027462	1	3623	3623		37.159	0	1	243960			52701	35995	43607	43642	57289	57289					-0.02045375750412859
SEISSATKL	9	Unmodified	_SEISSATKL_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX;ATRX|p.I1049Nfs*4|1|0.39|ENSG00000085224|chrX:77682110-77682111|-/T|frameshift_variant;nc|ENSG00000085224|P46100-6|ATRX;ATRX|p.R1371Kfs*6|1|0.17|ENSG00000085224|chrX:77663389-77663390|TC/-|frameshift_variant;ATRX|p.Y1667Sfs*13|1|0.04|ENSG00000085224|chrX:77633341-77633341|T/-|frameshift_variant	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MSMS	OvCa9_classI_Rep4_	4	468.2566223144531	2	468.25584	934.497126	-0.017778	-8.3245E-06	-0.25289	-0.00011842	-0.27067	-0.00012674	468.25562900695996	63.621	0.81882	60.146	59.916	60.735	-3.475					38	16	3	0	0	0	0.055627	1	4486	4486		115.49	19.679	1	270350			52702	1724	43608	43643	57290	57290					0.02725757452367361
SEISSATKL	9	Unmodified	_SEISSATKL_					0	0	0		nc|ENSG00000085224|P46100-2|ATRX;nc|ENSG00000085224|P46100-5|ATRX;nc|ENSG00000085224|P46100-3|ATRX;nc|ENSG00000085224|P46100-4|ATRX;ENSG00000085224|ENST00000373344|ATRX;ATRX|p.I1049Nfs*4|1|0.39|ENSG00000085224|chrX:77682110-77682111|-/T|frameshift_variant;nc|ENSG00000085224|P46100-6|ATRX;ATRX|p.R1371Kfs*6|1|0.17|ENSG00000085224|chrX:77663389-77663390|TC/-|frameshift_variant;ATRX|p.Y1667Sfs*13|1|0.04|ENSG00000085224|chrX:77633341-77633341|T/-|frameshift_variant	nc|ENSG00000085224|P46100-2|ATRX	nc|ENSG00000085224|P46100-2|ATRX	MULTI-MATCH	OvCa9_classI_Rep2	2		2	468.25584	934.497126	-1.994	-0.00093371	1.832	0.00085783	-0.16204	-7.5878E-05	468.25655971147773	62.928	0.99494	60.183	59.744	60.739	-2.7444	0.018451	0.00099271	NaN	115.49	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63197			52703	1724	43608	43643							0.02725757452367361
SEITTKDL	8	Unmodified	_SEITTKDL_					0	0	0		ENSG00000187514|ENST00000409115|PTMA;nc|ENSG00000187514|P06454|PTMA;ENST00000468027.5_1_2:232573416-232577283:+|nuORF	ENSG00000187514|ENST00000409115|PTMA	ENSG00000187514|ENST00000409115|PTMA	MULTI-MSMS	OvCa9_classI_Rep2	2	453.74188232421875	2	453.742565	905.470577	-0.16012	-7.2653E-05	0.14471	6.5663E-05	-0.015404	-6.9896E-06	453.7424673999775	62.774	1.669	60.029	59.597	61.266	-2.7444					76	31	4	0	0	0	0.19367	3	4733	4719;4725;4733		125.81	22.506	1	464000			52704	8407	43609	43644	57291;57292;57293	57293					0.014060685610388646
SEITTKDL	8	Unmodified	_SEITTKDL_					0	0	0		ENSG00000187514|ENST00000409115|PTMA;nc|ENSG00000187514|P06454|PTMA;ENST00000468027.5_1_2:232573416-232577283:+|nuORF	ENSG00000187514|ENST00000409115|PTMA	ENSG00000187514|ENST00000409115|PTMA	MULTI-MSMS	OvCa9_classI_Rep4_	4	453.74334716796875	2	453.742565	905.470577	0.12925	5.8646E-05	-0.25881	-0.00011743	-0.12956	-5.8785E-05	453.742364930436	63.414	1.7425	59.939	59.577	61.319	-3.475					96	35	4	0	0	0	0.13946	6	4465	4443;4453;4465;4478;4491;4503		134.81	24.76	1	2521700			52705	8407	43609	43644	57294;57295;57296;57297;57298;57299	57296					0.014060685610388646
SEIVREFK	8	Unmodified	_SEIVREFK_					0	0	0		nc|ENSG00000102038|P28370-2|SMARCA1;nc|ENSG00000102038|P28370|SMARCA1;ENSG00000102038|ENST00000371121|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5	nc|ENSG00000102038|P28370-2|SMARCA1;ENSG00000153147|ENST00000283131|SMARCA5	ENSG00000153147|ENST00000283131|SMARCA5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.76287841796875	2	504.279649	1006.54475	-1.3514	-0.00068151	3.3168	0.0016726	1.9653	0.00099107	504.7833755175706	54.253	1.1274	51.006	50.466	51.593	-3.2474					34	21	3	0	0	0	0.028476	1	3298	3298		35.618	0	1	26141			52706	5663;2220	43610	43645	57300	57300					0.04173456443231771
SEKDVRVIPTK	11	Unmodified	_SEKDVRVIPTK_					0	0	0		tr|A0A7D7A0L1|A0A7D7A0L1_9CLOTDAK2domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10460PE=4SV=1	tr|A0A7D7A0L1|A0A7D7A0L1_9CLOTDAK2domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10460PE=4SV=1	tr|A0A7D7A0L1|A0A7D7A0L1_9CLOTDAK2domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10460PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	425.2384948730469	3	424.58211	1270.7245	0.30472	0.00012938	-2.211	-0.00093873	-1.9062	-0.00080936	424.5810078000762	31.814	0.29811	31.814	31.658	31.956	0					12	5	3	0	0	0	0.026174	1	1325	1325		22.562	10.129	1	47601			52707	35998	43611	43646	57301	57301					0.09996715660372502
SEKEQRQAL	9	Unmodified	_SEKEQRQAL_					0	0	0		ENST00000393448.6_1_5:179018652-179028988:+|nuORF;nc|ENSG00000176783|Q96T51-2|RUFY1;ENSG00000176783|ENST00000319449|RUFY1;ENST00000502531.1_1_5:179023563-179032937:+|nuORF	ENST00000393448.6_1_5:179018652-179028988:+|nuORF	ENST00000393448.6_1_5:179018652-179028988:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	544.7882080078125	2	544.78837	1087.56219	-0.76681	-0.00041775	-0.01905	-1.0378E-05	-0.78586	-0.00042813	544.7883679358283	28.613	0.49802	28.613	28.39	28.888	0					13	9	2	0	0	0	0.42676	1	953	953		49.442	1.7842	1	137420			52708	7629	43612	43647	57302	57302					0.021907519782416784
SEKIMSSCSL	10	Oxidation (M)	_SEKIM(Oxidation (M))SSCSL_		SEKIM(1)SSCSL		SEKIM(44)SSCSL	0	0	1			REV__PRKCH|p.I463Sfs*19|1|0.14|ENSG00000027075|chr14:61485610-61485611|-/GC|frameshift_variant	REV__PRKCH|p.I463Sfs*19|1|0.14|ENSG00000027075|chr14:61485610-61485611|-/GC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	550.7544555664062	2	550.75175	1099.48895	0.23988	0.00013211	3.5302	0.0019443	3.7701	0.0020764	550.7534925768304	161.89	0.91498	161.89	161.56	162.48	0					40	17	3	0	0	0	0.58067	1	19012	19012		44.377	8.7589	1	285760	+		52709	29318	43613	43648	57303	57303		646			-0.05681880850897869
SEKKAESEI	9	Unmodified	_SEKKAESEI_					0	0	0			REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.7649230957031	2	510.764029	1019.5135	-0.054754	-2.7966E-05	-0.25395	-0.00012971	-0.3087	-0.00015767	510.7638016501123	59.317	1.6284	55.925	55.553	57.182	-3.392					65	32	3	0	0	0	0.045281	1	3952	3952		122.18	18.119	1	627350	+		52710	20754	43614	43649	57304	57304					0.004528386184802002
SEKKAESEI	9	Unmodified	_SEKKAESEI_					0	0	0			REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	REV__nc|ENSG00000162614|Q0ZGT2-4|NEXN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	510.764029	1019.5135	-0.43966	-0.00022456	0.31819	0.00016252	-0.12147	-6.2043E-05	510.76409312843094	58.929	1.2328	56.148	55.74	56.973	-2.7801	0.11151	0.00042193	NaN	122.18	38	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106570	+		52711	20754	43614	43649							0.004528386184802002
SEKKIFIGL	9	Unmodified	_SEKKIFIGL_					0	0	0		ENSG00000104960|ENST00000391842|PTOV1;nc|ENSG00000104960|Q86YD1-3|PTOV1	ENSG00000104960|ENST00000391842|PTOV1	ENSG00000104960|ENST00000391842|PTOV1	MULTI-MSMS	OvCa9_classI_Rep2	2	517.8150024414062	2	517.815867	1033.61718	-1.1898	-0.00061611	0.20435	0.00010582	-0.98547	-0.00051029	517.8159155387452	85.398	2.0286	83.907	83.505	85.534	-1.4906					71	39	2	0	0	0	0.1804	3	7387	7387;7392;7399		79.713	32.055	1	609000			52712	2411	43615	43650	57305;57306;57307	57305					0.10171790516801593
SEKKKGKKF	9	Unmodified	_SEKKKGKKF_					0	0	0			REV__ENSG00000147041|ENST00000297875|SYTL5	REV__ENSG00000147041|ENST00000297875|SYTL5	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3300170898438	2	540.332216	1078.64988	-0.85736	-0.00046326	-3.2028	-0.0017306	-4.0602	-0.0021939	540.3303552188828	135.53	0.83455	135.3	134.93	135.76	-0.22696					31	16	2	0	0	0	0.56889	1	13458	13458		35.618	6.4482	1	171450	+		52713	20038	43616	43651	57308	57308					0.11369997639667417
SEKLHKFI	8	Unmodified	_SEKLHKFI_					0	0	0			REV__nc|ENSG00000162819|Q5VW32-2|BROX	REV__nc|ENSG00000162819|Q5VW32-2|BROX	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2887878417969	2	501.292559	1000.57057	-1.4695	-0.00073667	-2.6975	-0.0013522	-4.167	-0.0020889	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.7594	1	11294	11294		21.96	1.9631	1	97838	+		52714	20782	43617	43652	57309	57309					0.07030350685522535
SEKLLSIYI	9	Unmodified	_SEKLLSIYI_					0	0	0			REV__TMX2-CTNND1|2|fusion	REV__TMX2-CTNND1|2|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	532.7891235351562	2	533.313158	1064.61176	-1.5748	-0.00083985	1.189	0.00063409	-0.38582	-0.00020576	533.314034358402	104.47	0.74394	103.9	103.57	104.32	-0.57639					21	14	2	0	0	0	0.027462	1	9715	9715		35.618	0	1	30739	+		52715	23031	43618	43653	57310	57310					0.08204066934331422
SEKPAGADL	9	Unmodified	_SEKPAGADL_					0	0	0		ENSG00000011007|ENST00000613537|ELOA;nc|ENSG00000011007|Q14241-1|ELOA	ENSG00000011007|ENST00000613537|ELOA	ENSG00000011007|ENST00000613537|ELOA	MSMS	OvCa9_classI_Rep4_	4	444.22869873046875	2	444.227082	886.439611	NaN	NaN	NaN	NaN	NaN	NaN	NaN	48.305	1	45.197	44.697	45.697	-3.1077								0	0	0	0.043201	1	2655	2655		79.713	10.926	1				52716	952	43619	43654	57311	57311					-0.008150847531851468
SEKPSKTLL	9	Unmodified	_SEKPSKTLL_					0	0	0		ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MSMS	OvCa99_classI_Rep5	1	501.79644775390625	2	501.795132	1001.57571	1.3523	0.00067858	0.79019	0.00039651	2.1425	0.0010751	501.7953483978705	79.304	0.39531	79.304	79.079	79.474	0					29	9	4	0	0	0	0.094616	1	8072	8072		98.629	0	1	6318400			52717	1227	43620	43655	57312	57312					0.07498609757476515
SEKQFSKRY	9	Unmodified	_SEKQFSKRY_					0	0	0		ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	ENSG00000163584|ENST00000295830|RPL22L1	MULTI-MSMS	OvCa9_classI_Rep3	3	586.802978515625	2	586.806562	1171.59857	-8.2814	-0.0048596	2.4781	0.0014542	-5.8033	-0.0034054	586.8077830487384	159.82	3.6388	158.49	157.91	161.55	-1.3316					146	73	3	0	0	0	0.5811	1	13866	13866		34.173	7.3764	1	151840			52718	6331	43621	43656	57313	57313					0.019636288749552477
SEKQVSELN	9	Unmodified	_SEKQVSELN_					0	0	0		tr|A0A7D6VXK5|A0A7D6VXK5_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12395PE=4SV=1	tr|A0A7D6VXK5|A0A7D6VXK5_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12395PE=4SV=1	tr|A0A7D6VXK5|A0A7D6VXK5_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12395PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.7831420898438	2	517.261653	1032.50875	-1.532	-0.00079245	-2.5745	-0.0013317	-4.1065	-0.0021242	517.2621429774773	43.915	0.81064	43.915	43.27	44.08	0					27	18	2	0	0	0	0.027462	1	2914	2914		39.253	0	1	90875			52719	35287	43622	43657	57314	57314					-0.00620045524260604
SEKRDKSKL	9	Unmodified	_SEKRDKSKL_					0	0	0			REV__ENSG00000125772|ENST00000379019|GPCPD1	REV__ENSG00000125772|ENST00000379019|GPCPD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.76416015625	2	545.814387	1089.61422	-0.31586	-0.0001724	3.0669	0.001674	2.7511	0.0015016	545.8160712231895	58.706	0.5695	58.706	58.403	58.973	0					32	13	4	0	0	0	0.027418	1	5017	5017		62.107	1.9892	1	641530	+		52720	18743	43623	43658	57315	57315					0.07299915392013645
SEKRESENPF	10	Unmodified	_SEKRESENPF_					0	0	0		ENAM|p.Q942E|1|0.2|ENSG00000132464|chr4:70644250-70644250|C/G|missense_variant	ENAM|p.Q942E|1|0.2|ENSG00000132464|chr4:70644250-70644250|C/G|missense_variant	ENAM|p.Q942E|1|0.2|ENSG00000132464|chr4:70644250-70644250|C/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	611.2659912109375	2	611.788566	1221.56258	2.8916	0.001769	-2.3921	-0.0014634	0.49952	0.0003056	611.7870008114222	86.453	0.36986	86.453	86.35	86.72	0					18	8	3	0	0	0	0.02706	1	9130	9130		37.812	8.662	1	629800			52721	796	43624	43659	57316	57316					-0.03933873092569229
SEKVDRAVL	9	Unmodified	_SEKVDRAVL_					0	0	0		nc|ENSG00000123240|Q96CV9-3|OPTN;nc|ENSG00000123240|Q96CV9-2|OPTN;ENSG00000123240|ENST00000378747|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	MULTI-MSMS	OvCa99_classI_Rep5	1	508.79022216796875	2	508.790381	1015.56621	0.18173	9.246E-05	-0.6803	-0.00034613	-0.49857	-0.00025367	508.7900285941323	46.425	1.1427	46.425	45.71	46.852	0					38	20	3	0	0	0	0.046778	1	3275	3275		120.87	37.581	1	5901000			52722	3584	43625	43660	57317	57317					0.059048414719427456
SEKVDRAVL	9	Unmodified	_SEKVDRAVL_					0	0	0		nc|ENSG00000123240|Q96CV9-3|OPTN;nc|ENSG00000123240|Q96CV9-2|OPTN;ENSG00000123240|ENST00000378747|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	MULTI-MSMS	OvCa9_classI_Rep2	2	508.7873229980469	2	508.790381	1015.56621	-1.4306	-0.00072788	1.1009	0.00056012	-0.32974	-0.00016777	508.7907219691847	51.244	2.0302	48.431	47.661	49.691	-2.8129					95	40	4	0	0	0	0.22035	3	3348	3348;3354;3361		72.879	20.887	1	384860			52723	3584	43625	43660	57318;57319;57320	57318					0.059048414719427456
SEKVDRAVL	9	Unmodified	_SEKVDRAVL_					0	0	0		nc|ENSG00000123240|Q96CV9-3|OPTN;nc|ENSG00000123240|Q96CV9-2|OPTN;ENSG00000123240|ENST00000378747|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.788818359375	2	508.790381	1015.56621	-0.59689	-0.00030369	0.080632	4.1025E-05	-0.51626	-0.00026267	508.7903550714233	51.521	2.1624	48.348	48.072	50.235	-3.1734					101	42	4	0	0	0	0.13326	3	3028	3028;3039;3051		88.177	18.549	1	1606100			52724	3584	43625	43660	57321;57322;57323	57321					0.059048414719427456
SEKVDRAVL	9	Unmodified	_SEKVDRAVL_					0	0	0		nc|ENSG00000123240|Q96CV9-3|OPTN;nc|ENSG00000123240|Q96CV9-2|OPTN;ENSG00000123240|ENST00000378747|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	MULTI-MATCH	OvCa99_classI_Rep5	1		2	508.790381	1015.56621	-0.34319	-0.00017461	-0.18264	-9.2925E-05	-0.52583	-0.00026753	508.7902462574263	48.665	0.39417	48.665	48.501	48.895	0	0.18343	-0.00059499	NaN	88.177	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	313980			52725	3584	43625	43660							0.059048414719427456
SEKVSHVL	8	Unmodified	_SEKVSHVL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OvCa99_classI_Rep5	1	449.75335693359375	2	449.753267	897.491981	-0.050287	-2.2617E-05	-0.67929	-0.00030551	-0.72958	-0.00032813	449.7529290514715	39.292	2.3581	39.292	38.882	41.24	0					94	52	5	0	0	0	0.25402	2	2285	2285;2308		115.46	20.468	1	11139000			52726	4552	43626	43661	57324;57325	57324					0.03913498380427427
SEKVSHVL	8	Unmodified	_SEKVSHVL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OvCa9_classI_Rep2	2	449.7532653808594	2	449.753267	897.491981	2.6558	0.0011945	-3.1809	-0.0014306	-0.52509	-0.00023616	449.7519419910019	44.877	1.6463	42.167	41.802	43.448	-2.7097					74	32	4	0	0	0	0.48084	2	2575	2575;2598		79.451	16.145	1	318930			52727	4552	43626	43661	57326;57327	57326					0.03913498380427427
SEKVSHVL	8	Unmodified	_SEKVSHVL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	449.7543029785156	2	449.753267	897.491981	-0.50056	-0.00022513	0.25983	0.00011686	-0.24072	-0.00010827	449.7533401968017	45.036	2.2807	41.998	41.613	43.894	-3.0385					75	43	3	0	0	0	0.45246	3	2266	2266;2275;2288		82.305	18.999	1	1345400			52728	4552	43626	43661	57328;57329;57330	57328					0.03913498380427427
SELAEPRL	8	Unmodified	_SELAEPRL_					0	0	0			REV__ENSG00000072071|ENST00000361434|ADGRL1;REV__nc|ENSG00000117114|O95490-2|ADGRL2	REV__ENSG00000072071|ENST00000361434|ADGRL1	MULTI-MSMS	OvCa9_classI_Rep2	2	457.75067138671875	2	457.750724	913.486896	1.5908	0.0007282	-1.6362	-0.00074895	-0.045336	-2.0753E-05	457.7498652662749	42.651	1.1371	39.942	39.621	40.758	-2.7097					35	22	2	0	0	0	0.67745	1	2317	2317		47.916	10.756	1	97367	+		52729	16909;18336	43627	43662	57331	57331					0.026691945178072274
SELARKEDEE	10	Unmodified	_SELARKEDEE_					0	0	0			REV__tr|A0A7D6VTR2|A0A7D6VTR2_9CLOTPhagemajorcapsidproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10190PE=4SV=1	REV__tr|A0A7D6VTR2|A0A7D6VTR2_9CLOTPhagemajorcapsidproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10190PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	603.2888793945312	2	603.285857	1204.55716	2.8258	0.0017048	3.6895	0.0022258	6.5153	0.0039306	603.2881496159947	100.73	0.49487	100.73	100.44	100.94	0					24	11	3	0	0	0	0.38315	1	11186	11186		70.816	8.7088	1	1460300	+		52730	31625	43628	43663	57332	57332					-0.03693596675043409
SELATKGTMV	10	Unmodified	_SELATKGTMV_					0	0	0		nc|ENSG00000150275|Q96QU1-4|PCDH15;nc|ENSG00000150275|Q96QU1-6|PCDH15;ENSG00000150275|ENST00000644397|PCDH15;PCDH15|p.R1292Pfs*9|1|0.14|ENSG00000150275|chr10:53840428-53840428|C/-|frameshift_variant;nc|ENSG00000150275|Q96QU1|PCDH15	nc|ENSG00000150275|Q96QU1-4|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15	nc|ENSG00000150275|Q96QU1-4|PCDH15	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.8037719726562	2	518.7708	1035.52705	1.9421	0.0010075	-1.7293	-0.00089711	0.2128	0.0001104	518.7699008229451	88.644	0.24368	87.277	87.086	87.329	-1.3676					5	4	2	0	0	0	0.026782	1	7752	7752		45.972	32.518	1	9229.3			52731	15089;15090	43629	43664	57333	57333					0.010703731260718996
SELDDRADAL	10	Unmodified	_SELDDRADAL_					0	0	0		ENST00000544432.5_1_12:6572000-6579752:-|nuORF;ENST00000535927.5_1_12:6574044-6579752:-|nuORF;ENSG00000049245|ENST00000054666|VAMP3;nc|ENSG00000139190|P23763-2|VAMP1;ENSG00000220205|ENST00000316509|VAMP2;nc|ENSG00000139190|P23763-3|VAMP1;ENSG00000139190|ENST00000396308|VAMP1;ENST00000539047.1_1_12:6574469-6579793:-|nuORF	ENST00000544432.5_1_12:6572000-6579752:-|nuORF	ENST00000544432.5_1_12:6572000-6579752:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	552.764404296875	2	552.762017	1103.50948	-0.09578	-5.2943E-05	0.22352	0.00012355	0.12774	7.0607E-05	552.761896234759	71.05	0.38989	71.05	70.877	71.267	0					27	9	4	0	0	0	0.30325	1	6848	6848		80.455	9.6384	1	1931300			52732	1164	43630	43665	57334	57334					-0.038132508752369176
SELELMTLKV	10	Unmodified	_SELELMTLKV_					0	0	0			REV__nc|ENSG00000171444|P23508|MCC	REV__nc|ENSG00000171444|P23508|MCC	MULTI-MSMS	OvCa9_classI_Rep2	2	581.8207397460938	2	581.823032	1161.63151	-0.57827	-0.00033645	-2.3138	-0.0013462	-2.8921	-0.0016827	581.821625248966	136.1	1.0308	135.88	135.52	136.55	-0.22697					44	20	3	0	0	0	0.70152	1	13513	13513		30.318	3.2704	1	81744	+		52733	21613	43631	43666	57335	57335					0.057160748827755015
SELELSCTQSD	11	Unmodified	_SELELSCTQSD_					0	0	0			REV__ENSG00000111886|ENST00000402938|GABRR2	REV__ENSG00000111886|ENST00000402938|GABRR2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	606.8172607421875	2	606.25845	1210.50235	1.4497	0.0008789	-3.4068	-0.0020654	-1.9571	-0.0011865	606.2561254564163	97.314	0.96731	94.936	94.708	95.675	-2.3786					30	18	2	0	0	0	0.025806	1	8630	8630		8.2351	0	1	48414	+		52734	18069	43632	43667	57336	57336					-0.09448351537957933
SELHLLKI	8	Unmodified	_SELHLLKI_					0	0	0		ENST00000469997.1_1_16:69068020-69068488:+|nuORF	ENST00000469997.1_1_16:69068020-69068488:+|nuORF	ENST00000469997.1_1_16:69068020-69068488:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.79473876953125	2	476.794935	951.575317	0.67009	0.0003195	-1.1183	-0.00053318	-0.44817	-0.00021368	476.79430466142145	111.9	1.8845	110.39	110.05	111.94	-1.5111					79	36	3	0	0	0	0.71369	2	10317	10317;10340		40.573	0	1	847840			52735	12355	43633	43668	57337;57338	57337					0.09759234828266017
SELIRNVTL	9	Unmodified	_SELIRNVTL_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000589825.5_1_17:42960950-42971889:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MULTI-MSMS	OvCa9_classI_Rep2	2	522.8056030273438	2	522.806031	1043.59751	0.29647	0.000155	-0.34263	-0.00017913	-0.046164	-2.4135E-05	522.805756073572	93.382	1.3396	92.214	91.498	92.837	-1.168					68	25	4	0	0	0	0.051592	3	8338	8328;8333;8338		117.81	29.539	1	430480			52736	2685	43634	43669	57339;57340;57341	57341					0.07745414506052839
SELIRNVTL	9	Unmodified	_SELIRNVTL_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000589825.5_1_17:42960950-42971889:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MULTI-MSMS	OvCa9_classI_Rep3	3	522.8070678710938	2	522.806031	1043.59751	-0.9997	-0.00052265	1.0101	0.0005281	0.010416	5.4455E-06	522.8064615110486	94.079	1.1699	92.183	91.643	92.813	-1.8956					65	22	4	0	0	0	0.051592	4	6056	6056;6062;6068;6074		117.81	22.299	1	591270			52737	2685	43634	43669	57342;57343;57344;57345	57342					0.07745414506052839
SELIRNVTL	9	Unmodified	_SELIRNVTL_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000589825.5_1_17:42960950-42971889:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.8068237304688	2	522.806031	1043.59751	-0.77914	-0.00040734	0.53449	0.00027944	-0.24465	-0.0001279	522.8062512206362	94.689	1.246	92.221	91.666	92.912	-2.4685					72	24	4	0	0	0	0.13326	1	8307	8307		88.177	3.0161	1	474340			52738	2685	43634	43669	57346	57346					0.07745414506052839
SELITKAV	8	Unmodified	_SELITKAV_					0	0	0		ENSG00000168298|ENST00000304218|H1-4;ENSG00000184357|ENST00000331442|H1-5;ENSG00000187837|ENST00000343677|H1-2;ENSG00000124575|ENST00000244534|H1-3	ENSG00000168298|ENST00000304218|H1-4;ENSG00000184357|ENST00000331442|H1-5;ENSG00000187837|ENST00000343677|H1-2;ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MULTI-MSMS	OvCa9_classI_Rep4_	4	430.7594909667969	2	430.758018	859.501483	0.16553	7.1305E-05	-0.15309	-6.5946E-05	0.012441	5.3592E-06	430.75794203704083	69.381	1.7571	65.9	65.565	67.322	-3.4812					82	35	4	0	0	0	0.6345	1	5189	5189		56.721	7.2795	1	626000			52739	3662;6889;8438;8149	43635	43670	57347	57347					0.06611266665959192
SELITKAV	8	Unmodified	_SELITKAV_					0	0	0		ENSG00000168298|ENST00000304218|H1-4;ENSG00000184357|ENST00000331442|H1-5;ENSG00000187837|ENST00000343677|H1-2;ENSG00000124575|ENST00000244534|H1-3	ENSG00000168298|ENST00000304218|H1-4;ENSG00000184357|ENST00000331442|H1-5;ENSG00000187837|ENST00000343677|H1-2;ENSG00000124575|ENST00000244534|H1-3	ENSG00000124575|ENST00000244534|H1-3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	430.758018	859.501483	-1.4099	-0.00060733	1.6603	0.00071519	0.25041	0.00010787	430.75871428922954	68.603	1.2902	65.983	65.425	66.715	-2.6203	0.04172	0.00065677	NaN	56.721	57	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158580			52740	3662;6889;8438;8149	43635	43670							0.06611266665959192
SELKETVEL	9	Unmodified	_SELKETVEL_					0	0	0		GOLGA2|p.K864Rfs*49|1|0.05|ENSG00000167110|chr9:128257647-128257648|-/C|frameshift_variant;nc|ENSG00000167110|Q08379|GOLGA2;ENSG00000167110|ENST00000611957|GOLGA2;nc|ENSG00000167110|Q08379-2|GOLGA2	GOLGA2|p.K864Rfs*49|1|0.05|ENSG00000167110|chr9:128257647-128257648|-/C|frameshift_variant	GOLGA2|p.K864Rfs*49|1|0.05|ENSG00000167110|chr9:128257647-128257648|-/C|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	524.2833862304688	2	524.282054	1046.54956	1.0053	0.00052706	0.73256	0.00038407	1.7379	0.00091113	524.2822584095213	79.017	1.524	79.017	78.75	80.274	0					81	37	4	0	0	0	0.014622	2	8021	8021;8050		154.12	44.64	1	10188000			52741	6757	43636	43671	57348;57349	57348					0.028142957953377845
SELKETVEL	9	Unmodified	_SELKETVEL_					0	0	0		GOLGA2|p.K864Rfs*49|1|0.05|ENSG00000167110|chr9:128257647-128257648|-/C|frameshift_variant;nc|ENSG00000167110|Q08379|GOLGA2;ENSG00000167110|ENST00000611957|GOLGA2;nc|ENSG00000167110|Q08379-2|GOLGA2	GOLGA2|p.K864Rfs*49|1|0.05|ENSG00000167110|chr9:128257647-128257648|-/C|frameshift_variant	GOLGA2|p.K864Rfs*49|1|0.05|ENSG00000167110|chr9:128257647-128257648|-/C|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	524.282054	1046.54956	0.43997	0.00023067	-0.64176	-0.00033646	-0.20179	-0.00010579	524.2814192304294	80.88	1.6154	79.185	78.568	80.184	-1.6951	0.18683	-0.0009223	NaN	154.12	101	31	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120670			52742	6757	43636	43671							0.028142957953377845
SELKETVEL	9	Unmodified	_SELKETVEL_					0	0	0		GOLGA2|p.K864Rfs*49|1|0.05|ENSG00000167110|chr9:128257647-128257648|-/C|frameshift_variant;nc|ENSG00000167110|Q08379|GOLGA2;ENSG00000167110|ENST00000611957|GOLGA2;nc|ENSG00000167110|Q08379-2|GOLGA2	GOLGA2|p.K864Rfs*49|1|0.05|ENSG00000167110|chr9:128257647-128257648|-/C|frameshift_variant	GOLGA2|p.K864Rfs*49|1|0.05|ENSG00000167110|chr9:128257647-128257648|-/C|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	524.282054	1046.54956	-0.77728	-0.00040752	0.10861	5.6941E-05	-0.66868	-0.00035058	524.2817940035474	81.206	1.7688	78.884	78.44	80.209	-2.3226	-0.11419	-0.0001355	NaN	154.12	102	34	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	275040			52743	6757	43636	43671							0.028142957953377845
SELKETVEL	9	Unmodified	_SELKETVEL_					0	0	0		GOLGA2|p.K864Rfs*49|1|0.05|ENSG00000167110|chr9:128257647-128257648|-/C|frameshift_variant;nc|ENSG00000167110|Q08379|GOLGA2;ENSG00000167110|ENST00000611957|GOLGA2;nc|ENSG00000167110|Q08379-2|GOLGA2	GOLGA2|p.K864Rfs*49|1|0.05|ENSG00000167110|chr9:128257647-128257648|-/C|frameshift_variant	GOLGA2|p.K864Rfs*49|1|0.05|ENSG00000167110|chr9:128257647-128257648|-/C|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	524.282054	1046.54956	-1.3154	-0.00068963	1.3857	0.00072647	0.070265	3.6839E-05	524.2825033940095	81.617	0.82085	78.906	78.641	79.461	-2.7106	-0.091763	0.0012036	NaN	154.12	55	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	272600			52744	6757	43636	43671							0.028142957953377845
SELKHHAGR	9	Unmodified	_SELKHHAGR_					0	0	0		L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|244|1|anti-sense	L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|244|1|anti-sense	L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|244|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.815185546875	2	517.778139	1033.54173	1.5399	0.00079732	3.7698	0.0019519	5.3097	0.0027492	517.7799372441617	107.27	0.5004	107.27	107.06	107.56	0					24	11	3	0	0	0	0.027462	1	12120	12120		42.396	0	1	987380			52745	14723	43637	43672	57350	57350					0.026296261090692497
SELKIMTHL	9	Unmodified	_SELKIMTHL_					0	0	0		PDGFRA|p.R940Vfs*16|1|0.06|ENSG00000134853|chr4:54289051-54289052|-/GTGGATTCTACTTTCTACAATA|frameshift_variant;ENSG00000134853|ENST00000257290|PDGFRA;ENST00000509092.5_1_4:55124935-55146696:+|nuORF;nc|ENSG00000134853|P16234-3|PDGFRA;ENST00000507536.1_1_4:55143544-55147845:+|nuORF;ENST00000461294.2_1_4:55143562-55144193:+|nuORF	PDGFRA|p.R940Vfs*16|1|0.06|ENSG00000134853|chr4:54289051-54289052|-/GTGGATTCTACTTTCTACAATA|frameshift_variant	PDGFRA|p.R940Vfs*16|1|0.06|ENSG00000134853|chr4:54289051-54289052|-/GTGGATTCTACTTTCTACAATA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3067626953125	2	536.296985	1070.57942	0.66179	0.00035492	0.085879	4.6057E-05	0.74767	0.00040097	536.2971527958888	81.393	0.53368	81.393	81.08	81.613	0					19	12	2	0	0	0	0.027418	1	8388	8388		65.465	26.444	1	1116700			52746	4339	43638	43673	57351	57351					0.04694956259686478
SELKLSEFPK	10	Unmodified	_SELKLSEFPK_					0	0	0			REV__ENST00000532533.1_1_11:6964427-6977428:+|nuORF	REV__ENST00000532533.1_1_11:6964427-6977428:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.80126953125	2	589.326796	1176.63904	1.8646	0.0010989	1.3263	0.00078164	3.191	0.0018805	589.3273639336933	77.67	0.79953	77.67	77.168	77.968	0					61	18	5	0	0	0	0.027118	1	7792	7792		19.104	10.41	1	4425500	+		52747	20140	43639	43674	57352	57352					0.0577855047470166
SELLISVNL	9	Unmodified	_SELLISVNL_					0	0	0			REV__ENST00000479037.5_1_2:230672327-230744801:-|nuORF	REV__ENST00000479037.5_1_2:230672327-230744801:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	495.28521728515625	2	494.289682	986.564812	0.19779	9.7765E-05	-0.30355	-0.00015004	-0.10576	-5.2277E-05	494.28948581364995	106.87	1.7757	105.6	105.32	107.1	-1.267					57	34	2	0	0	0	0.027462	1	7668	7668		23.042	0	1	408670	+		52748	26427	43640	43675	57353	57353					0.07099207383191697
SELLLLAKP	9	Unmodified	_SELLLLAKP_					0	0	0		tr|A0A553SSX2|A0A553SSX2_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_03850PE=4SV=1	tr|A0A553SSX2|A0A553SSX2_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_03850PE=4SV=1	tr|A0A553SSX2|A0A553SSX2_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_03850PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3042297363281	2	492.310418	982.606283	0.18382	9.0495E-05	-0.38521	-0.00018964	-0.20139	-9.9148E-05	492.31006670099185	106.48	0.57027	105.21	104.96	105.53	-1.267					19	10	2	0	0	0	0.027462	1	7489	7489		42.396	15.703	1	103290			52749	34431	43641	43676	57354	57354					0.11428388142508084
SELLPMISP	9	Unmodified	_SELLPMISP_					0	0	0		nc|ENSG00000204138|Q8IZ21-3|PHACTR4;ENSG00000204138|ENST00000373839|PHACTR4;nc|ENSG00000204138|Q8IZ21-2|PHACTR4;ENST00000493669.2_1_1:28733953-28817463:+|nuORF	nc|ENSG00000204138|Q8IZ21-3|PHACTR4	nc|ENSG00000204138|Q8IZ21-3|PHACTR4	MULTI-MSMS	OvCa9_classI_Rep2	2	493.76708984375	2	493.764986	985.515419	-0.73999	-0.00036538	3.6546	0.0018045	2.9146	0.0014391	493.76710400194355	68.35	1.8857	65.73	65.18	67.066	-2.6203					109	37	6	0	0	0	0.29717	1	5405	5405		63.306	3.188	1	960960			52750	8951	43642	43677	57355	57355					0.022081761027379798
SELMVSVRA	9	Unmodified	_SELMVSVRA_					0	0	0			REV__ENST00000442383.1_1_20:42839752-42839989:+|nuORF	REV__ENST00000442383.1_1_20:42839752-42839989:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	496.2658996582031	2	496.265684	990.516816	1.8637	0.0009249	-2.3177	-0.0011502	-0.454	-0.0002253	496.2643848501877	59.438	2.028	56.339	55.347	57.375	-3.0993					83	55	2	0	0	0	0.59259	1	1940	1940		32.812	2.3088	1	32593	+		52751	25854	43643	43678	57356	57356					0.021178101914983927
SELNGKNL	8	Unmodified	_SELNGKNL_					0	0	0			REV__EPS15L1-SLC15A5|1|fusion	REV__EPS15L1-SLC15A5|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	437.7491760253906	2	437.735074	873.455596	1.0616	0.0004647	0.081473	3.5664E-05	1.1431	0.00050036	437.7350924000214	62.377	0.66771	62.377	61.953	62.621	0					23	15	2	0	0	0	0.028476	1	5560	5560		85.359	0	1	402050	+		52752	28113	43644	43679	57357	57357					0.01380621483701816
SELQCGPELL	10	Unmodified	_SELQCGPELL_					0	0	0			REV__ENST00000525522.5_1_11:494693-499199:-|nuORF	REV__ENST00000525522.5_1_11:494693-499199:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	544.7720336914062	2	544.768257	1087.52196	0.31729	0.00017285	3.8746	0.0021107	4.1918	0.0022836	544.7702452988545	162.35	0.91498	162.35	161.56	162.48	0					32	17	4	0	0	0	0.45822	1	19034	19034		60.118	12.461	1	292550	+		52753	16554	43645	43680	57358	57358					-0.01829930736539609
SELRNMQDL	9	Oxidation (M)	_SELRNM(Oxidation (M))QDL_		SELRNM(1)QDL		SELRNM(110)QDL	0	0	1		CON__Q5XQN5;CON__Q922U2;nc|ENSG00000170486|Q14CN4-3|KRT72;nc|ENSG00000170486|Q14CN4-2|KRT72;ENSG00000170486|ENST00000293745|KRT72;CON__Q14CN4-1;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259	CON__Q5XQN5;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000185479|ENST00000252252|KRT6B	ENST00000552629.5_1_12:52910419-52914113:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.267333984375	2	561.266413	1120.51827	0.22324	0.0001253	-0.05279	-2.9629E-05	0.17045	9.567E-05	561.2662162340382	54.662	1.9948	51.415	50.568	52.563	-3.2474					92	38	4	0	0	0	0.07097	1	3369	3369		106.68	24.378	1	509300		+	52754	653;627;620	43646	43681	57359	57359		17			-0.037166005104154465
SELRNMQDL	9	Oxidation (M)	_SELRNM(Oxidation (M))QDL_					0	0	1		CON__Q5XQN5;CON__Q922U2;nc|ENSG00000170486|Q14CN4-3|KRT72;nc|ENSG00000170486|Q14CN4-2|KRT72;ENSG00000170486|ENST00000293745|KRT72;CON__Q14CN4-1;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259	CON__Q5XQN5;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000185479|ENST00000252252|KRT6B	ENST00000552629.5_1_12:52910419-52914113:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	561.266413	1120.51827	-0.6764	-0.00037964	0.58105	0.00032613	-0.095346	-5.3515E-05	561.2665380965979	54.368	1.2473	51.554	51.075	52.322	-2.8139	0.069588	0.00041237	NaN	106.68	59	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75254		+	52755	653;627;620	43646	43681				17			-0.037166005104154465
SELRNMQDL	9	Unmodified	_SELRNMQDL_					0	0	0		CON__Q5XQN5;CON__Q922U2;nc|ENSG00000170486|Q14CN4-3|KRT72;nc|ENSG00000170486|Q14CN4-2|KRT72;ENSG00000170486|ENST00000293745|KRT72;CON__Q14CN4-1;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259	CON__Q5XQN5;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000185479|ENST00000252252|KRT6B	ENST00000552629.5_1_12:52910419-52914113:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.2687377929688	2	553.268955	1104.52336	0.14469	8.0051E-05	-0.56833	-0.00031444	-0.42364	-0.00023439	553.2685354436092	75.126	1.4945	71.895	71.532	73.026	-3.2308					67	30	3	0	0	0	0.017173	1	5901	5901		150.36	33.458	1	569940		+	52756	653;627;620	43646	43682	57360	57360					-0.02472296647783878
SELRNMQDL	9	Unmodified	_SELRNMQDL_					0	0	0		CON__Q5XQN5;CON__Q922U2;nc|ENSG00000170486|Q14CN4-3|KRT72;nc|ENSG00000170486|Q14CN4-2|KRT72;ENSG00000170486|ENST00000293745|KRT72;CON__Q14CN4-1;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647;ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259	CON__Q5XQN5;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000185479|ENST00000252252|KRT6B	ENST00000552629.5_1_12:52910419-52914113:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	553.268955	1104.52336	0.28	0.00015492	-0.38143	-0.00021103	-0.10143	-5.6116E-05	553.2685605060998	74.121	1.4645	72.15	71.535	72.999	-1.9711	0.12752	0.00010477	NaN	150.36	65	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	131900		+	52757	653;627;620	43646	43682							-0.02472296647783878
SELSEHVKL	9	Unmodified	_SELSEHVKL_					0	0	0		ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	ENSG00000175220|ENST00000311956|ARHGAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	521.2822875976562	2	521.282389	1040.55022	-0.20748	-0.00010816	0.30149	0.00015716	0.094004	4.9003E-05	521.2825383669226	63.099	0.79356	63.099	62.621	63.414	0					35	19	3	0	0	0	0.1944	1	5666	5666		77.318	7.69	1	1595300			52758	7526	43647	43683	57361	57361					0.031571352350511006
SELSLNVI	8	Unmodified	_SELSLNVI_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000016285	REV__CON__ENSEMBL:ENSBTAP00000016285	MULTI-MSMS	OvCa99_classI_Rep5	1	437.7491760253906	2	437.74765	873.480748	1.0932	0.00047856	-0.79672	-0.00034876	0.29651	0.0001298	437.74720515990725	62.356	1.1764	62.356	62.081	63.257	0					55	28	4	0	0	0	0.14547	2	5560	5531;5560		133.81	4.13	1	7322200	+	+	52759	16173	43648	43684	57362;57363	57363					0.03894676286279264
SELSLTGASR	10	Unmodified	_SELSLTGASR_					0	0	0		nc|ENSG00000257923|P39880-6|CUX1;nc|ENSG00000257923|P39880-4|CUX1;nc|ENSG00000257923|P39880-5|CUX1;nc|ENSG00000257923|P39880-2|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1;CUX1|p.Q1075Sfs*45|1|0.07|ENSG00000257923|chr7:102227458-102227458|C/-|frameshift_variant	nc|ENSG00000257923|P39880-6|CUX1	nc|ENSG00000257923|P39880-6|CUX1	MULTI-SECPEP	OvCa9_classI_Rep2	2	509.8028869628906	2	510.769645	1019.52474	-0.66502	-0.00033967	4.1721	0.002131	3.5071	0.0017913	510.77181440902	137.55	0.54958	137.32	137.08	137.63	-0.22697					20	11	2	0	0	0	0.02706	1	13691	13691		37.812	3.639	1	13616			52760	9476	43649	43685	57364	57364					0.015756607126149902
SELVRLFPR	9	Unmodified	_SELVRLFPR_					0	0	0			REV__ENSG00000134815|ENST00000328771|DHX34	REV__ENSG00000134815|ENST00000328771|DHX34	MULTI-SECPEP	OvCa9_classI_Rep2	2	557.8453369140625	2	558.82984	1115.64513	1.8593	0.001039	-2.7144	-0.0015169	-0.85507	-0.00047784	558.8274672417717	87.527	0.88554	86.096	85.741	86.627	-1.4311					23	17	2	0	0	0	0.027462	1	7656	7656		29.15	2.4566	1	18462	+		52761	19235	43650	43686	57365	57365					0.09193113496894512
SEMDVSFYL	9	Unmodified	_SEMDVSFYL_					0	0	0			REV__ENST00000466609.1_1_3:98378565-98379411:+|nuORF	REV__ENST00000466609.1_1_3:98378565-98379411:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	545.743408203125	2	545.741708	1089.46886	0.91224	0.00049785	0.18146	9.9032E-05	1.0937	0.00059688	545.7416351107571	150.82	0.96156	150.82	150.54	151.5	0					41	18	4	0	0	0	0.48324	1	17671	17671		44.117	0.49075	1	290970	+		52762	26188	43651	43687	57366	57366					-0.07229308519208644
SEMNRAIQRL	10	Oxidation (M)	_SEM(Oxidation (M))NRAIQRL_		SEM(1)NRAIQRL		SEM(45)NRAIQRL	0	0	1		ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENST00000552183.1_1_12:52635324-52638266:+|nuORF;ENST00000551130.1_1_12:52635330-52637101:+|nuORF;DTX4-KRT7|1|fusion	ENSG00000135480|ENST00000331817|KRT7;DTX4-KRT7|1|fusion	ENSG00000135480|ENST00000331817|KRT7	MULTI-MSMS	OvCa9_classI_Rep4_	4	411.8844909667969	3	411.883795	1232.62955	-0.76906	-0.00031676	0.6584	0.00027118	-0.11066	-4.5579E-05	411.8839882651349	48.977	1.5056	45.85	45.38	46.885	-3.1271					67	28	3	0	0	0	0.57535	1	2739	2739		45.022	13.492	1	224330		+	52763	646;764	43652	43688	57367	57367		19			0.022544589175367946
SEMNRAIQRL	10	Oxidation (M)	_SEM(Oxidation (M))NRAIQRL_					0	0	1		ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENST00000552183.1_1_12:52635324-52638266:+|nuORF;ENST00000551130.1_1_12:52635330-52637101:+|nuORF;DTX4-KRT7|1|fusion	ENSG00000135480|ENST00000331817|KRT7;DTX4-KRT7|1|fusion	ENSG00000135480|ENST00000331817|KRT7	MULTI-MATCH	OvCa9_classI_Rep2	2		3	411.883795	1232.62955	0.11534	4.7507E-05	0.16748	6.8984E-05	0.28283	0.00011649	411.88371900870806	48.528	1.3907	45.767	45.28	46.671	-2.7603	-0.041479	-0.00034003	NaN	45.022	55	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53272		+	52764	646;764	43652	43688				19			0.022544589175367946
SEMRFVQDL	9	Unmodified	_SEMRFVQDL_					0	0	0		ENSG00000167657|ENST00000545797|DAPK3;ENST00000595279.1_1_19:3959101-3961233:-|nuORF	ENSG00000167657|ENST00000545797|DAPK3	ENSG00000167657|ENST00000545797|DAPK3	MULTI-MSMS	OvCa99_classI_Rep5	1	562.77490234375	2	562.773874	1123.53319	2.4182	0.0013609	-0.41372	-0.00023283	2.0044	0.001128	562.7734325658276	96.945	0.55625	96.945	96.668	97.225	0					32	12	3	0	0	0	0.075618	1	10633	10633		104.01	2.761	1	1545500			52765	6825	43653	43689	57368	57368					-0.02363108642384759
SEMTYSRQV	9	Unmodified	_SEMTYSRQV_					0	0	0			REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	REV__nc|ENSG00000135049|Q9UPW5-2|AGTPBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	550.7545776367188	2	550.755681	1099.49681	0.23988	0.00013211	-3.6078	-0.001987	-3.3679	-0.0018549	550.7534925768304	161.89	0.91498	161.89	161.56	162.48	0					40	17	3	0	0	0	0.48047	1	18969	18969		44.377	0.26039	1	285760	+		52766	19252	43654	43690	57369	57369					-0.0489598553911037
SENDGASW	8	Unmodified	_SENDGASW_					0	0	0		nc|ENSG00000011332|Q92782-1|DPF1	nc|ENSG00000011332|Q92782-1|DPF1	nc|ENSG00000011332|Q92782-1|DPF1	MULTI-MSMS	OvCa9_classI_Rep3	3	433.17169189453125	2	433.169764	864.324976	2.6506	0.0011482	1.0551	0.00045706	3.7058	0.0016052	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.71267	2	1652	1652;1691		40.778	5.2906	1	60065			52767	14863	43655	43691	57370;57371	57370					-0.11261394235134503
SENKAQVSL	9	Unmodified	_SENKAQVSL_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN-WDR67|2|fusion;UTRN-WDR67|1|fusion	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OvCa99_classI_Rep5	1	488.26031494140625	2	488.258914	974.503274	-0.46383	-0.00022647	0.14608	7.1325E-05	-0.31775	-0.00015514	488.25882479944994	51.592	1.0563	51.592	51.291	52.347	0					46	24	4	0	0	0	0.07097	1	3984	3984		106.68	24.378	1	3356400			52768	5647	43656	43692	57372	57372					0.01500275683918062
SENKDKSKHVT	11	Unmodified	_SENKDKSKHVT_					0	0	0		nc|ENSG00000152402|P33402-3|GUCY1A2	nc|ENSG00000152402|P33402-3|GUCY1A2	nc|ENSG00000152402|P33402-3|GUCY1A2	MULTI-MSMS	OvCa9_classI_Rep2	2	424.8895263671875	3	424.889603	1271.64698	-0.9883	-0.00041992	1.9211	0.00081626	0.93281	0.00039634	424.8904354672349	33.271	1.2911	30.562	30.321	31.612	-2.7097					77	25	4	0	0	0	0.69589	1	1192	1192		31.068	0.49928	1	615830			52769	15100	43657	43693	57373	57373					0.022020777241777978
SENSTLKIN	9	Unmodified	_SENSTLKIN_					0	0	0		tr|A0A7D6ZMI4|A0A7D6ZMI4_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12050PE=3SV=1	tr|A0A7D6ZMI4|A0A7D6ZMI4_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12050PE=3SV=1	tr|A0A7D6ZMI4|A0A7D6ZMI4_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12050PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.7914733886719	2	503.264196	1004.51384	-0.88543	-0.0004456	-1.0466	-0.00052671	-1.932	-0.00097231	504.2669768510058	49.947	0.60968	49.947	49.635	50.245	0					23	13	3	0	0	0	0.027426	1	3790	3790		56.721	0	1	152710			52770	35665	43658	43694	57374	57374					0.011762583383415404
SEPDAVHVVL	10	Unmodified	_SEPDAVHVVL_					0	0	0		ENST00000533960.1_1_11:770991-771360:-|nuORF;ENST00000530209.5_1_11:770899-772585:-|nuORF;ENST00000534603.5_1_11:770899-773566:-|nuORF;nc|ENSG00000177225|Q8NB37-3|GATD1;ENSG00000177225|ENST00000319863|GATD1	ENST00000533960.1_1_11:770991-771360:-|nuORF	ENST00000533960.1_1_11:770991-771360:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	533.2824096679688	2	533.282389	1064.55022	-0.52256	-0.00027867	0.73307	0.00039093	0.21052	0.00011226	533.2827790897065	92.451	1.6044	91.283	90.919	92.523	-1.168					102	30	6	0	0	0	0.28791	1	8209	8209		82.305	15.876	1	624070			52771	7668	43659	43695	57375	57375					0.020531352350417365
SEPDAVHVVL	10	Unmodified	_SEPDAVHVVL_					0	0	0		ENST00000533960.1_1_11:770991-771360:-|nuORF;ENST00000530209.5_1_11:770899-772585:-|nuORF;ENST00000534603.5_1_11:770899-773566:-|nuORF;nc|ENSG00000177225|Q8NB37-3|GATD1;ENSG00000177225|ENST00000319863|GATD1	ENST00000533960.1_1_11:770991-771360:-|nuORF	ENST00000533960.1_1_11:770991-771360:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	533.2830810546875	2	533.282389	1064.55022	-0.83176	-0.00044356	0.33068	0.00017635	-0.50108	-0.00026722	533.2827541760266	93.065	1.7056	91.104	90.79	92.495	-1.9617					87	33	5	0	0	0	0.028201	6	5940	5924;5928;5934;5940;5945;5952		138.24	47.872	1	1168900			52772	7668	43659	43695	57376;57377;57378;57379;57380;57381	57379					0.020531352350417365
SEPDAVHVVL	10	Unmodified	_SEPDAVHVVL_					0	0	0		ENST00000533960.1_1_11:770991-771360:-|nuORF;ENST00000530209.5_1_11:770899-772585:-|nuORF;ENST00000534603.5_1_11:770899-773566:-|nuORF;nc|ENSG00000177225|Q8NB37-3|GATD1;ENSG00000177225|ENST00000319863|GATD1	ENST00000533960.1_1_11:770991-771360:-|nuORF	ENST00000533960.1_1_11:770991-771360:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.2833251953125	2	533.282389	1064.55022	-1.5534	-0.00082842	1.0585	0.00056448	-0.49494	-0.00026394	533.2829160216671	93.607	1.4085	91.1	90.813	92.221	-2.5072					69	29	3	0	0	0	0.050494	3	8167	8167;8181;8194		128.86	52.087	1	930040			52773	7668	43659	43695	57382;57383;57384	57382					0.020531352350417365
SEPDAVHVVL	10	Unmodified	_SEPDAVHVVL_					0	0	0		ENST00000533960.1_1_11:770991-771360:-|nuORF;ENST00000530209.5_1_11:770899-772585:-|nuORF;ENST00000534603.5_1_11:770899-773566:-|nuORF;nc|ENSG00000177225|Q8NB37-3|GATD1;ENSG00000177225|ENST00000319863|GATD1	ENST00000533960.1_1_11:770991-771360:-|nuORF	ENST00000533960.1_1_11:770991-771360:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	533.282389	1064.55022	1.5642	0.00083415	0.59172	0.00031555	2.1559	0.0011497	533.2827266205836	91.233	0.43913	91.233	90.976	91.415	0	0.053081	-9.8346E-05	NaN	138.24	28	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2844500			52774	7668	43659	43695							0.020531352350417365
SEPDIAKVPL	10	Unmodified	_SEPDIAKVPL_					0	0	0		nc|ENSG00000116984|Q99707-2|MTR;ENSG00000116984|ENST00000366577|MTR	nc|ENSG00000116984|Q99707-2|MTR	nc|ENSG00000116984|Q99707-2|MTR	MULTI-MSMS	OvCa99_classI_Rep5	1	534.8021850585938	2	534.800414	1067.58628	2.4779	0.0013252	0.58864	0.00031481	3.0666	0.00164	534.8005684251295	94.803	0.64139	94.803	94.433	95.075	0					32	14	3	0	0	0	0.55109	1	10334	10334		47.96	0.043923	1	487100			52775	3224	43660	43696	57385	57385					0.05518592411908685
SEPDMIKQVL	10	Unmodified	_SEPDMIKQVL_					0	0	0		nc|ENSG00000059377|P24557-3|TBXAS1;ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-4|TBXAS1;nc|ENSG00000059377|P24557-2|TBXAS1;ENSG00000059377|ENST00000448866|TBXAS1	nc|ENSG00000059377|P24557-3|TBXAS1	nc|ENSG00000059377|P24557-3|TBXAS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	580.3056640625	2	580.305007	1158.59546	-1.2378	-0.00071832	-0.47602	-0.00027624	-1.7139	-0.00099456	580.3047074452444	101.31	0.87466	99.043	98.838	99.712	-2.2665					35	17	3	0	0	0	0.44722	1	9101	9101		61.691	6.915	1	202690			52776	14879	43661	43697	57386	57386					0.022506177059312904
SEPDMIKQVL	10	Unmodified	_SEPDMIKQVL_					0	0	0		nc|ENSG00000059377|P24557-3|TBXAS1;ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-4|TBXAS1;nc|ENSG00000059377|P24557-2|TBXAS1;ENSG00000059377|ENST00000448866|TBXAS1	nc|ENSG00000059377|P24557-3|TBXAS1	nc|ENSG00000059377|P24557-3|TBXAS1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	580.305007	1158.59546	-1.2554	-0.00072853	0.72169	0.0004188	-0.53374	-0.00030973	580.3053009901828	100.06	0.79269	99.232	98.914	99.707	-0.83052	0.084057	0.00030985	NaN	61.691	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157840			52777	14879	43661	43697							0.022506177059312904
SEPDMIKQVL	10	Unmodified	_SEPDMIKQVL_					0	0	0		nc|ENSG00000059377|P24557-3|TBXAS1;ENST00000462275.5_1_7:139529186-139716213:+|nuORF;nc|ENSG00000059377|P24557-4|TBXAS1;nc|ENSG00000059377|P24557-2|TBXAS1;ENSG00000059377|ENST00000448866|TBXAS1	nc|ENSG00000059377|P24557-3|TBXAS1	nc|ENSG00000059377|P24557-3|TBXAS1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	580.305007	1158.59546	-1.8287	-0.0010612	1.0405	0.00060381	-0.78823	-0.00045741	580.3055727803869	100.77	0.964	99.169	98.85	99.814	-1.6053	0.020722	0.00067987	NaN	61.691	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238450			52778	14879	43661	43697							0.022506177059312904
SEPGARRAWT	10	Unmodified	_SEPGARRAWT_					0	0	0			REV__ENST00000376511.6_1_6:30568410-30568581:-|nuORF	REV__ENST00000376511.6_1_6:30568410-30568581:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.8087768554688	2	565.788704	1129.56285	0.0093763	5.305E-06	-1.6009	-0.00090576	-1.5915	-0.00090045	565.7877638346957	95.723	2.1069	93.298	92.604	94.711	-2.4256					100	41	3	0	0	0	0.026734	1	8463	8463		47.657	32.792	1	600000	+		52779	25100	43662	43698	57387	57387					0.0032559141793626623
SEPGKVIVL	9	Unmodified	_SEPGKVIVL_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-MSMS	OvCa99_classI_Rep5	1	471.28802490234375	2	471.286943	940.559333	2.2741	0.0010718	0.16814	7.924E-05	2.4423	0.001151	471.2868746193848	82.358	0.84481	82.358	81.979	82.824	0					33	19	2	0	0	0	0.33652	1	8534	8534		58.782	8.7574	1	1348100			52780	3077	43663	43699	57388	57388					0.0866752859137705
SEPGKVIVL	9	Unmodified	_SEPGKVIVL_					0	0	0		ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	ENSG00000115267|ENST00000649979|IFIH1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	471.286943	940.559333	2.0306	0.00095701	-1.1577	-0.00054562	0.87291	0.00041139	471.2861242394377	85.196	0.927	82.55	82.215	83.142	-2.6463	0.096047	-0.0011266	NaN	58.782	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128090			52781	3077	43663	43699							0.0866752859137705
SEPGVLRLK	9	Unmodified	_SEPGVLRLK_					0	0	0			REV__LOXL4|p.V443Pfs*13|1|0.36|ENSG00000138131|chr10:98256881-98256882|-/AGTGCACCGG|frameshift_variant	REV__LOXL4|p.V443Pfs*13|1|0.36|ENSG00000138131|chr10:98256881-98256882|-/AGTGCACCGG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.27154541015625	2	499.803291	997.59203	0.5131	0.00025645	-0.56729	-0.00028353	-0.054191	-2.7085E-05	499.8027121996385	34.742	0.70405	31.954	31.747	32.451	-2.7881					21	13	2	0	0	0	0.027462	1	1054	1054		37.812	17.815	1	30601	+		52782	19514	43664	43700	57389	57389					0.09313735714215454
SEPHILETL	9	Unmodified	_SEPHILETL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	OvCa99_classI_Rep5	1	519.7786254882812	2	519.776939	1037.53933	1.6292	0.00084682	0.43635	0.00022681	2.0656	0.0010736	519.7770781001337	95.631	1.2971	95.631	95.204	96.501	0					85	30	4	0	0	0	0.015253	2	10433	10433;10462		152.63	59.438	1	7549600			52783	5987	43665	43701	57390;57391	57390					0.022057328607843374
SEPHILETL	9	Unmodified	_SEPHILETL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	OvCa9_classI_Rep2	2	519.7759399414062	2	519.776939	1037.53933	0.34566	0.00017967	-1.108	-0.00057593	-0.76238	-0.00039627	519.7763759968788	97.195	1.3737	96.236	95.825	97.199	-0.95857					81	27	4	0	0	0	0.12365	1	8796	8796		90.777	34.056	1	352960			52784	5987	43665	43701	57392	57392					0.022057328607843374
SEPHILETL	9	Unmodified	_SEPHILETL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	OvCa9_classI_Rep3	3	519.77783203125	2	519.776939	1037.53933	-0.1559	-8.1033E-05	-0.63573	-0.00033044	-0.79163	-0.00041147	519.776584974185	97.996	1.3774	96.237	95.818	97.195	-1.7595					83	26	4	0	0	0	0.14739	1	6530	6530		85.359	23.252	1	489430			52785	5987	43665	43701	57393	57393					0.022057328607843374
SEPHILETL	9	Unmodified	_SEPHILETL_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON;nc|ENSG00000159140|P18583-6|SON;nc|ENSG00000159140|P18583-8|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.7779541015625	2	519.776939	1037.53933	-0.42118	-0.00021892	-0.2172	-0.0001129	-0.63839	-0.00033182	519.7768446928638	98.627	1.3331	96.249	95.773	97.106	-2.3786					77	25	4	0	0	0	0.16524	1	8778	8778		82.305	0.064519	1	423840			52786	5987	43665	43701	57394	57394					0.022057328607843374
SEPPVYANL	9	Unmodified	_SEPPVYANL_					0	0	0		ENSG00000177606|ENST00000371222|JUN	ENSG00000177606|ENST00000371222|JUN	ENSG00000177606|ENST00000371222|JUN	MULTI-MSMS	OvCa99_classI_Rep5	1	495.2518005371094	2	495.250557	988.486562	1.9088	0.00094532	0.37511	0.00018577	2.2839	0.0011311	495.2506074773307	101.13	1.2261	101.13	100.81	102.04	0					76	28	4	0	0	0	0.047062	2	11231	11231;11262		120.62	15.458	1	6137800			52787	7699	43666	43702	57395;57396	57395					-0.00814225202043417
SEPQTKLGV	9	Unmodified	_SEPQTKLGV_					0	0	0			REV__ENSG00000166266|ENST00000393094|CUL5	REV__ENSG00000166266|ENST00000393094|CUL5	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.75604248046875	2	479.763832	957.513111	1.247	0.00059826	0.80605	0.00038671	2.053	0.00098498	479.7640660427444	74.615	0.43919	74.615	74.441	74.88	0					17	10	2	0	0	0	0.027453	1	7411	7411		54.776	8.8041	1	205200	+		52788	21171	43667	43703	57397	57397					0.032654636892857525
SEPSLVRPLSR	11	Unmodified	_SEPSLVRPLSR_					0	0	0			REV__ENSG00000165757|ENST00000375377|JCAD	REV__ENSG00000165757|ENST00000375377|JCAD	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.7459411621094	3	414.238455	1239.69353	1.146	0.00047471	2.3421	0.00097021	3.4881	0.0014449	414.2392841953275	84.484	0.99962	81.821	81.594	82.594	-2.6629					52	20	3	0	0	0	0.025528	1	7103	7103		19.627	0	1	222990	+		52789	21114	43668	43704	57398	57398					0.08327562346153172
SEPSQHVVL	9	Unmodified	_SEPSQHVVL_					0	0	0		nc|ENSG00000132394|P57772-2|EEFSEC;ENSG00000132394|ENST00000254730|EEFSEC	nc|ENSG00000132394|P57772-2|EEFSEC	nc|ENSG00000132394|P57772-2|EEFSEC	MULTI-MSMS	OvCa99_classI_Rep5	1	498.26177978515625	2	498.261456	994.50836	-0.68101	-0.00033932	0.043013	2.1432E-05	-0.638	-0.00031789	498.2613687562045	61.54	1.1369	61.54	61.028	62.165	0					65	26	3	0	0	0	0.062324	2	5449	5416;5449		111.65	34.874	1	3292000			52790	4136	43669	43705	57399;57400	57400					0.01088579546535584
SEQALASSLI	10	Unmodified	_SEQALASSLI_					0	0	0		ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.77362060546875	2	509.774396	1017.53424	-1.2718	-0.00064836	0.1296	6.6066E-05	-1.1423	-0.00058229	509.77471497479934	43.321	0.73041	40.314	40.063	40.793	-3.0074					33	13	3	0	0	0	0.39172	1	2067	2067		69.628	8.6557	1	344030			52791	6795	43670	43706	57401	57401					0.026174289981327092
SEQALASSLI	10	Unmodified	_SEQALASSLI_					0	0	0		ENST00000330736.9_1_16:89334888-89371640:-|nuORF;ENSG00000167522|ENST00000301030|ANKRD11	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	ENST00000330736.9_1_16:89334888-89371640:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	509.774396	1017.53424	0.49058	0.00025009	-1.0893	-0.00055531	-0.59875	-0.00030523	509.77385439286826	43.226	0.59492	40.517	40.262	40.857	-2.7097	0.10141	-0.00041455	NaN	69.628	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68570			52792	6795	43670	43706							0.026174289981327092
SEQDKAHIL	9	Unmodified	_SEQDKAHIL_					0	0	0		ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	ENSG00000198677|ENST00000358746|SKIC3	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.8770141601562	2	520.772188	1039.52982	1.4102	0.00073439	-0.094066	-4.8987E-05	1.3161	0.00068541	521.2732730193145	102.97	0.50475	102.97	102.68	103.18	0					18	11	2	0	0	0	0.027462	1	11455	11455		17.365	0	1	322900			52793	8846	43671	43707	57402	57402					0.01163964575243881
SEQHPIDIP	9	Unmodified	_SEQHPIDIP_					0	0	0		tr|A0A553STX8|A0A553STX8_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05930PE=4SV=1	tr|A0A553STX8|A0A553STX8_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05930PE=4SV=1	tr|A0A553STX8|A0A553STX8_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05930PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.360107421875	2	518.258914	1034.50327	1.9079	0.00098879	1.9737	0.0010229	3.8816	0.0020117	518.2592900718978	137.05	2.3162	135.51	134.15	136.47	-1.5437					61	47	2	0	0	0	0.027433	1	13312	13312		64.207	16.292	1	10241			52794	34548	43672	43708	57403	57403					-0.01259724316082611
SEQIYKELE	9	Unmodified	_SEQIYKELE_					0	0	0			REV__CON__Q3SZ57	REV__CON__Q3SZ57	MULTI-SECPEP	OvCa9_classI_Rep2	2	569.8341064453125	2	569.784961	1137.55537	-0.74593	-0.00042502	2.9809	0.0016985	2.235	0.0012735	569.7875242867104	98.011	0.34013	97.118	96.924	97.264	-0.89305					15	6	4	0	0	0	0.027462	1	8877	8877		29.15	0	1	27289	+	+	52795	16209	43673	43709	57404	57404					-0.007906056930096383
SEQIYKELE	9	Unmodified	_SEQIYKELE_					0	0	0			REV__CON__Q3SZ57	REV__CON__Q3SZ57	MULTI-MATCH	OvCa99_classI_Rep5	1		2	569.784961	1137.55537	2.5391	0.0014467	2.2771	0.0012974	4.8162	0.0027442	570.2862950555153	97.216	0.25819	97.216	97.05	97.309	0	0.048907	-0.00052841	NaN	15.642	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	375380	+	+	52796	16209	43673	43709							-0.007906056930096383
SEQKFLIGL	9	Unmodified	_SEQKFLIGL_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	MULTI-MSMS	OvCa99_classI_Rep5	1	518.297119140625	2	517.797675	1033.5808	0.88779	0.00045969	-4.1933	-0.0021713	-3.3055	-0.0017116	518.2958569897511	109.73	1.2522	109.73	109.24	110.49	0					73	27	5	0	0	0	0.46356	1	12436	12436		45.972	5.1941	1	1557500			52797	4566	43674	43710	57405	57405					0.06534913620112093
SEQKFLIGL	9	Unmodified	_SEQKFLIGL_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	MULTI-MSMS	OvCa9_classI_Rep2	2	517.7976684570312	2	517.797675	1033.5808	0.31978	0.00016558	-1.1862	-0.00061422	-0.86645	-0.00044864	517.7971338426015	110.11	1.925	109.93	109.66	111.59	-0.17237					65	38	2	0	0	0	0.14855	6	10360	10354;10360;10366;10372;10378;10386		85.161	17.667	1	589030			52798	4566	43674	43710	57406;57407;57408;57409;57410;57411	57407					0.06534913620112093
SEQKFLIGL	9	Unmodified	_SEQKFLIGL_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	MULTI-MSMS	OvCa9_classI_Rep3	3	517.797607421875	2	517.797675	1033.5808	1.4247	0.00073772	-2.1936	-0.0011359	-0.76892	-0.00039814	517.7964964999819	110.93	1.598	109.83	109.49	111.09	-1.1038					49	31	2	0	0	0	0.059253	5	8020	8020;8026;8039;8047;8054		113.41	20.268	1	549860			52799	4566	43674	43710	57412;57413;57414;57415;57416	57412					0.06534913620112093
SEQKFLIGL	9	Unmodified	_SEQKFLIGL_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.797607421875	2	517.797675	1033.5808	0.19976	0.00010344	-0.96126	-0.00049774	-0.7615	-0.0003943	517.7971571114142	111.44	1.5176	109.93	109.58	111.1	-1.5111					48	28	3	0	0	0	0.10502	2	10268	10268;10281		95.815	10.654	1	597920			52800	4566	43674	43710	57417;57418	57417					0.06534913620112093
SEQPTLVTA	9	Unmodified	_SEQPTLVTA_					0	0	0		WDR75|p.V629Wfs*34|1|0.04|ENSG00000115368|chr2:189470140-189470141|-/TGGAACCCGATCCTAATTCAGAGAATATTGCT|frameshift_variant;ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75	WDR75|p.V629Wfs*34|1|0.04|ENSG00000115368|chr2:189470140-189470141|-/TGGAACCCGATCCTAATTCAGAGAATATTGCT|frameshift_variant	WDR75|p.V629Wfs*34|1|0.04|ENSG00000115368|chr2:189470140-189470141|-/TGGAACCCGATCCTAATTCAGAGAATATTGCT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.75958251953125	2	473.248015	944.481476	-0.62364	-0.00029514	0.22955	0.00010863	-0.39409	-0.0001865	473.24797868285805	44.418	0.53683	44.418	44.169	44.706	0					20	11	3	0	0	0	0.027462	1	3030	3030		17.468	5.957	1	321310			52801	3091	43675	43711	57419	57419					0.007014709353370563
SEQRLLIVL	9	Unmodified	_SEQRLLIVL_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-MSMS	OvCa9_classI_Rep3	3	535.8330688476562	2	535.832049	1069.64954	0.48815	0.00026156	-0.28298	-0.00015163	0.20517	0.00010994	535.8314796413584	117.89	0.9911	116.86	116.54	117.53	-1.0324					60	19	5	0	0	0	0.3076	1	8874	8874		62.107	7.3851	1	128600			52802	2918	43676	43712	57420	57420					0.11750577919792704
SEQSILTDGY	10	Unmodified	_SEQSILTDGY_					0	0	0			REV__ENSG00000253873|ENST00000398587|PCDHGA11	REV__ENSG00000253873|ENST00000398587|PCDHGA11	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.3052978515625	2	556.758943	1111.50333	0.35825	0.00019946	-2.7597	-0.0015365	-2.4014	-0.001337	556.7573610984512	62.231	0.5024	62.231	62.038	62.541	0					19	11	2	0	0	0	0.026826	1	5544	5544		44.377	37.184	1	540110	+		52803	23509	43677	43713	57421	57421					-0.047957691067495034
SERASIQDEEG	11	Unmodified	_SERASIQDEEG_					0	0	0			REV__ENST00000453344.6_1_22:51065823-51066491:-|nuORF	REV__ENST00000453344.6_1_22:51065823-51066491:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	610.7772827148438	2	610.773113	1219.53167	2.5393	0.0015509	4.4106	0.0026939	6.9499	0.0042448	610.7756217410033	120.91	0.49162	120.91	120.7	121.19	0					26	10	3	0	0	0	0.59615	1	13900	13900		45.022	0.64502	1	430530	+		52804	23717	43678	43714	57422	57422					-0.0693107119745946
SERDVNKIF	9	Unmodified	_SERDVNKIF_					0	0	0		tr|A0A553SHD1|A0A553SHD1_NIACI23SrRNA(Guanosine(2251)-2'-O)-methyltransferaseRlmBOS=NialliacirculansOX=1397GN=rlmBPE=4SV=1	tr|A0A553SHD1|A0A553SHD1_NIACI23SrRNA(Guanosine(2251)-2'-O)-methyltransferaseRlmBOS=NialliacirculansOX=1397GN=rlmBPE=4SV=1	tr|A0A553SHD1|A0A553SHD1_NIACI23SrRNA(Guanosine(2251)-2'-O)-methyltransferaseRlmBOS=NialliacirculansOX=1397GN=rlmBPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.7625122070312	2	554.293288	1106.57202	0.37953	0.00021037	1.1932	0.00066139	1.5727	0.00087176	554.2937528315958	47.572	1.2646	44.464	43.825	45.09	-3.1077					29	16	2	0	0	0	0.027453	1	2609	2609		45.972	8.1607	1	63229			52805	33258	43679	43715	57423	57423					0.0229993998361806
SERIIKLSF	9	Unmodified	_SERIIKLSF_					0	0	0			REV__ENST00000503518.2_1_4:2967477-2967627:+|nuORF	REV__ENST00000503518.2_1_4:2967477-2967627:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.7927856445312	2	546.824224	1091.63389	2.0211	0.0011052	-0.91082	-0.00049806	1.1102	0.00060711	546.8235858443102	95.363	0.37635	95.363	95.075	95.451	0					14	8	2	0	0	0	0.027462	1	10372	10372		16.473	0	1	278710	+		52806	26844	43680	43716	57424	57424					0.09174291402746348
SERPLRFP	8	Unmodified	_SERPLRFP_					0	0	0		OCRL|p.Q733Rfs*9|1|0.13|ENSG00000122126|chrX:129587059-129587059|C/-|frameshift_variant	OCRL|p.Q733Rfs*9|1|0.13|ENSG00000122126|chrX:129587059-129587059|C/-|frameshift_variant	OCRL|p.Q733Rfs*9|1|0.13|ENSG00000122126|chrX:129587059-129587059|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.29638671875	2	501.279983	1000.54541	-0.46179	-0.00023149	-3.0444	-0.0015261	-3.5062	-0.0017576	501.27950837491164	89.324	1.7897	86.721	85.882	87.672	-2.6027					77	35	3	0	0	0	0.028476	1	7561	7561		47.916	8.6628	1	265290			52807	15447	43681	43717	57425	57425					0.04516295882945087
SERPLRFP	8	Unmodified	_SERPLRFP_					0	0	0		OCRL|p.Q733Rfs*9|1|0.13|ENSG00000122126|chrX:129587059-129587059|C/-|frameshift_variant	OCRL|p.Q733Rfs*9|1|0.13|ENSG00000122126|chrX:129587059-129587059|C/-|frameshift_variant	OCRL|p.Q733Rfs*9|1|0.13|ENSG00000122126|chrX:129587059-129587059|C/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	501.279983	1000.54541	-0.7269	-0.00036438	-1.1444	-0.00057364	-1.8713	-0.00093802	501.2794933422324	88.631	1.6873	86.5	86.061	87.748	-2.1309	-0.11084	0.00045933	NaN	47.916	65	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	244500			52808	15447	43681	43717							0.04516295882945087
SERQNQEYQRL	11	Unmodified	_SERQNQEYQRL_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19	CON__P08727	CON__P08727	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.2405700683594	3	484.239294	1449.69605	-1.0853	-0.00052555	0.56002	0.00027118	-0.52529	-0.00025437	484.2396388085947	45.345	1.6142	42.306	42.023	43.637	-3.0385					98	30	5	0	0	0	0.18124	2	2307	2307;2317		82.494	25.346	1	977910		+	52809	625	43682	43718	57426;57427	57426					-0.010806339868622672
SERQVQAL	8	Unmodified	_SERQVQAL_					0	0	0		ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	ENSG00000183111|ENST00000333677|ARHGEF37	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.7532958984375	2	465.753798	929.493044	-0.081161	-3.7801E-05	-3.8228	-0.0017805	-3.904	-0.0018183	465.7514399168433	47.319	2.4038	44.246	42.876	45.279	-3.0724					87	46	3	0	0	0	0.45246	1	2545	2545		82.305	13.82	1	2414500			52810	8050	43683	43719	57428	57428					0.025477127493331864
SERRQDWFFWL	11	Unmodified	_SERRQDWFFWL_					0	0	0			REV__ENST00000343348.10_1_5:115814322-115814382:-|nuORF	REV__ENST00000343348.10_1_5:115814322-115814382:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.9107055664062	3	523.924759	1568.75245	-1.2241	-0.00064136	-0.78346	-0.00041047	-2.0076	-0.0010518	524.2586944883636	66.454	0.19555	62.964	62.805	63	-3.4902					5	3	2	0	0	0	0.026277	1	4821	4821		17.833	0	1	42692	+		52811	24669	43684	43720	57429	57429					-0.009179613595506453
SERTVEIIL	9	Unmodified	_SERTVEIIL_					0	0	0		ENSG00000139304|ENST00000644991|PTPRQ;nc|ENSG00000139304|Q9UMZ3|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	ENSG00000139304|ENST00000644991|PTPRQ	MULTI-MSMS	OvCa9_classI_Rep2	2	530.3056030273438	2	530.305864	1058.59717	-1.1013	-0.00058405	0.98185	0.00052068	-0.11948	-6.3363E-05	530.3062513399692	59.112	1.9095	56.332	55.74	57.649	-2.7801					134	36	6	0	0	0	0.074342	1	4288	4288		104.75	0	1	765210			52812	4764	43685	43721	57430	57430					0.07021994786191499
SERVGVLKQIH	11	Unmodified	_SERVGVLKQIH_					0	0	0			REV__ENSG00000092929|ENST00000207549|UNC13D	REV__ENSG00000092929|ENST00000207549|UNC13D	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3688354492188	2	633.369861	1264.72517	-4.8824	-0.0030923	3.9881	0.002526	-0.89421	-0.00056637	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.71191	1	13056	13056		25.574	0	1	765700	+		52813	17271	43686	43722	57431	57431					0.10339555100085818
SESAAVKEIL	10	Unmodified	_SESAAVKEIL_					0	0	0		ENST00000460192.5_1_1:8025453-8031070:+|nuORF;ENST00000497113.1_1_1:8022845-8031696:+|nuORF;ENST00000465354.5_1_1:8022845-8031070:+|nuORF;ENSG00000116288|ENST00000338639|PARK7	ENST00000460192.5_1_1:8025453-8031070:+|nuORF	ENST00000460192.5_1_1:8025453-8031070:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	523.7918090820312	2	523.790047	1045.56554	1.6433	0.00086074	0.51292	0.00026866	2.1562	0.0011294	523.7903484661838	78.56	1.1774	78.56	78.134	79.311	0					48	28	3	0	0	0	0.45953	1	7962	7962		59.931	8.7381	1	1184100			52814	3172	43687	43723	57432	57432					0.04458002032242803
SESAQSKML	9	Unmodified	_SESAQSKML_					0	0	0		ENSG00000196126|ENST00000360004|HLA-DRB1;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000232629|ENST00000437316|HLA-DQB2;ENSG00000198502|ENST00000374975|HLA-DRB5;nc|ENSG00000232629|P05538|HLA-DQB2;nc|ENSG00000179344|P01920|HLA-DQB1	ENSG00000196126|ENST00000360004|HLA-DRB1;nc|ENSG00000179344|P01920|HLA-DQB1	ENSG00000196126|ENST00000360004|HLA-DRB1	MULTI-MSMS	OvCa99_classI_Rep5	1	490.7403259277344	2	490.739499	979.464446	0.002796	1.3721E-06	0.052043	2.554E-05	0.054839	2.6912E-05	490.7393817601477	45.191	0.51863	45.191	44.977	45.496	0					25	11	3	0	0	0	0.049969	1	3104	3104		118.74	41.969	1	806900			52815	8566;15199	43688	43724	57433	57433					-0.026107729421141812
SESAQSKML	9	Unmodified	_SESAQSKML_					0	0	0		ENSG00000196126|ENST00000360004|HLA-DRB1;ENST00000487676.1_1_6:32628015-32629319:-|nuORF;ENSG00000179344|ENST00000434651|HLA-DQB1;ENSG00000232629|ENST00000437316|HLA-DQB2;ENSG00000198502|ENST00000374975|HLA-DRB5;nc|ENSG00000232629|P05538|HLA-DQB2;nc|ENSG00000179344|P01920|HLA-DQB1	ENSG00000196126|ENST00000360004|HLA-DRB1;nc|ENSG00000179344|P01920|HLA-DQB1	ENSG00000196126|ENST00000360004|HLA-DRB1	MSMS	OvCa9_classI_Rep4_	4	490.74017333984375	2	490.739499	979.464446	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.062	1	46.92	46.42	47.42	-3.1416								0	0	0	0.026006	1	2858	2858		122.18	28.17	1				52816	8566;15199	43688	43724	57434	57434					-0.026107729421141812
SESDFSDDF	9	Unmodified	_SESDFSDDF_					0	0	0		nc|ENSG00000048649|Q96T23-2|RSF1;ENSG00000048649|ENST00000308488|RSF1;nc|ENSG00000048649|Q96T23-3|RSF1	nc|ENSG00000048649|Q96T23-2|RSF1	nc|ENSG00000048649|Q96T23-2|RSF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.762939453125	2	524.690726	1047.3669	-1.786	-0.00093712	-0.52315	-0.00027449	-2.3092	-0.0012116	524.6900338337314	64.089	0.19636	64.089	63.974	64.17	0					6	4	2	0	0	0	0.027462	1	5818	5818		11.511	3.2797	1	103680			52817	1158	43689	43725	57435	57435					-0.15488883337275183
SESDKFILL	9	Unmodified	_SESDKFILL_					0	0	0		nc|ENSG00000116138|Q9Y2G8-2|DNAJC16;ENSG00000116138|ENST00000375847|DNAJC16;ENST00000483270.1_1_1:15886792-15891842:+|nuORF	nc|ENSG00000116138|Q9Y2G8-2|DNAJC16	nc|ENSG00000116138|Q9Y2G8-2|DNAJC16	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.287841796875	2	526.28714	1050.55973	-0.23493	-0.00012364	0.16059	8.4515E-05	-0.074343	-3.9126E-05	526.2871962273243	113.15	1.7214	111.71	111.06	112.78	-1.4461					69	34	3	0	0	0	0.34132	1	10482	10482		58.23	5.2932	1	203210			52818	3158	43690	43726	57436	57436					0.036469035205982436
SESDKTAVL	9	Unmodified	_SESDKTAVL_					0	0	0		ENST00000522752.5_1_8:38614850-38697853:+|nuORF;nc|ENSG00000147526|O75410-10|TACC1;nc|ENSG00000147526|O75410-5|TACC1;nc|ENSG00000147526|O75410-4|TACC1;nc|ENSG00000147526|O75410-6|TACC1;nc|ENSG00000147526|O75410-3|TACC1;nc|ENSG00000147526|O75410-7|TACC1;nc|ENSG00000147526|O75410-9|TACC1;ENSG00000147526|ENST00000317827|TACC1;nc|ENSG00000147526|O75410-2|TACC1	ENST00000522752.5_1_8:38614850-38697853:+|nuORF	ENST00000522752.5_1_8:38614850-38697853:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	475.2464294433594	2	475.245472	948.476391	-0.74103	-0.00035217	0.80442	0.0003823	0.063395	3.0128E-05	475.2457450267043	49.91	0.91633	49.91	49.593	50.509	0					53	20	4	0	0	0	0.094616	1	3746	3746		98.629	19.178	1	3676000			52819	5362	43691	43727	57437	57437					9.1670727329074E-05
SESDKTAVLTL	11	Unmodified	_SESDKTAVLTL_					0	0	0		ENST00000522752.5_1_8:38614850-38697853:+|nuORF;nc|ENSG00000147526|O75410-10|TACC1;nc|ENSG00000147526|O75410-5|TACC1;nc|ENSG00000147526|O75410-4|TACC1;nc|ENSG00000147526|O75410-6|TACC1;nc|ENSG00000147526|O75410-3|TACC1;nc|ENSG00000147526|O75410-7|TACC1;nc|ENSG00000147526|O75410-9|TACC1;ENSG00000147526|ENST00000317827|TACC1;nc|ENSG00000147526|O75410-2|TACC1	ENST00000522752.5_1_8:38614850-38697853:+|nuORF	ENST00000522752.5_1_8:38614850-38697853:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	582.313232421875	2	582.311343	1162.60813	-0.26589	-0.00015483	0.039172	2.2811E-05	-0.22672	-0.00013202	582.3110333957832	90.03	1.4228	87.455	87.149	88.572	-2.575					66	27	4	0	0	0	0.24327	1	7750	7750		74.165	6.6713	1	204010			52820	5362	43692	43728	57438	57438					0.0333335236982748
SESDKTAVLTL	11	Unmodified	_SESDKTAVLTL_					0	0	0		ENST00000522752.5_1_8:38614850-38697853:+|nuORF;nc|ENSG00000147526|O75410-10|TACC1;nc|ENSG00000147526|O75410-5|TACC1;nc|ENSG00000147526|O75410-4|TACC1;nc|ENSG00000147526|O75410-6|TACC1;nc|ENSG00000147526|O75410-3|TACC1;nc|ENSG00000147526|O75410-7|TACC1;nc|ENSG00000147526|O75410-9|TACC1;ENSG00000147526|ENST00000317827|TACC1;nc|ENSG00000147526|O75410-2|TACC1	ENST00000522752.5_1_8:38614850-38697853:+|nuORF	ENST00000522752.5_1_8:38614850-38697853:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	582.311343	1162.60813	1.5093	0.00087888	-2.3544	-0.001371	-0.84509	-0.00049211	582.3098166303517	88.881	1.7265	87.513	86.74	88.466	-1.3676	0.12148	-0.0020696	NaN	74.165	87	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103510			52821	5362	43692	43728							0.0333335236982748
SESDKTAVLTL	11	Unmodified	_SESDKTAVLTL_					0	0	0		ENST00000522752.5_1_8:38614850-38697853:+|nuORF;nc|ENSG00000147526|O75410-10|TACC1;nc|ENSG00000147526|O75410-5|TACC1;nc|ENSG00000147526|O75410-4|TACC1;nc|ENSG00000147526|O75410-6|TACC1;nc|ENSG00000147526|O75410-3|TACC1;nc|ENSG00000147526|O75410-7|TACC1;nc|ENSG00000147526|O75410-9|TACC1;ENSG00000147526|ENST00000317827|TACC1;nc|ENSG00000147526|O75410-2|TACC1	ENST00000522752.5_1_8:38614850-38697853:+|nuORF	ENST00000522752.5_1_8:38614850-38697853:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	582.311343	1162.60813	-1.6251	-0.00094634	0.9065	0.00052786	-0.71864	-0.00041847	582.3116923389233	89.338	1.262	87.207	86.846	88.108	-2.1309	-0.18433	0.0017281	NaN	74.165	73	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	251910			52822	5362	43692	43728							0.0333335236982748
SESFSRIAL	9	Unmodified	_SESFSRIAL_					0	0	0		ENSG00000058091|ENST00000380050|CDK14;CDK14|p.K110Rfs*4|1|0.31|ENSG00000058091|chr7:90726771-90726772|AA/-|frameshift_variant;CDK14|p.L138Pfs*10|1|0.03|ENSG00000058091|chr7:90747723-90747724|-/CTCACTCCTTACCCTCT|frameshift_variant	ENSG00000058091|ENST00000380050|CDK14	ENSG00000058091|ENST00000380050|CDK14	MULTI-MSMS	OvCa99_classI_Rep5	1	505.27398681640625	2	505.269281	1008.52401	2.8855	0.0014579	1.3746	0.00069454	4.2601	0.0021525	505.2702235282611	90.08	0.78979	90.08	89.556	90.346	0					46	18	4	0	0	0	0.1804	1	9632	9632		79.713	16.406	1	3265900			52823	1241	43693	43729	57439	57439					0.02008866063579262
SESFSRIAL	9	Unmodified	_SESFSRIAL_					0	0	0		ENSG00000058091|ENST00000380050|CDK14;CDK14|p.K110Rfs*4|1|0.31|ENSG00000058091|chr7:90726771-90726772|AA/-|frameshift_variant;CDK14|p.L138Pfs*10|1|0.03|ENSG00000058091|chr7:90747723-90747724|-/CTCACTCCTTACCCTCT|frameshift_variant	ENSG00000058091|ENST00000380050|CDK14	ENSG00000058091|ENST00000380050|CDK14	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.2704162597656	2	505.269281	1008.52401	-1.2109	-0.00061182	0.62206	0.00031431	-0.58883	-0.00029752	505.2694576655196	92.419	1.4598	89.876	89.517	90.976	-2.5425					42	27	2	0	0	0	0.34132	1	8019	8019		58.23	4.8785	1	298220			52824	1241	43693	43729	57440	57440					0.02008866063579262
SESFSRIAL	9	Unmodified	_SESFSRIAL_					0	0	0		ENSG00000058091|ENST00000380050|CDK14;CDK14|p.K110Rfs*4|1|0.31|ENSG00000058091|chr7:90726771-90726772|AA/-|frameshift_variant;CDK14|p.L138Pfs*10|1|0.03|ENSG00000058091|chr7:90747723-90747724|-/CTCACTCCTTACCCTCT|frameshift_variant	ENSG00000058091|ENST00000380050|CDK14	ENSG00000058091|ENST00000380050|CDK14	MULTI-MATCH	OvCa9_classI_Rep2	2		2	505.269281	1008.52401	0.77881	0.00039351	-1.8212	-0.00092017	-1.0423	-0.00052666	505.26844803927963	91.244	1.785	90.008	89.488	91.273	-1.2355	0.057173	-0.0016415	NaN	79.713	66	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184660			52825	1241	43693	43729							0.02008866063579262
SESFSRIAL	9	Unmodified	_SESFSRIAL_					0	0	0		ENSG00000058091|ENST00000380050|CDK14;CDK14|p.K110Rfs*4|1|0.31|ENSG00000058091|chr7:90726771-90726772|AA/-|frameshift_variant;CDK14|p.L138Pfs*10|1|0.03|ENSG00000058091|chr7:90747723-90747724|-/CTCACTCCTTACCCTCT|frameshift_variant	ENSG00000058091|ENST00000380050|CDK14	ENSG00000058091|ENST00000380050|CDK14	MULTI-MATCH	OvCa9_classI_Rep3	3		2	505.269281	1008.52401	-1.5979	-0.00080736	-0.051182	-2.5861E-05	-1.6491	-0.00083322	505.2692787032159	91.864	1.7325	89.84	89.534	91.266	-2.0241	-0.11082	0.00014711	NaN	79.713	60	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	315940			52826	1241	43693	43729							0.02008866063579262
SESHRFTVL	9	Unmodified	_SESHRFTVL_					0	0	0		nc|ENSG00000139505|Q9Y217-2|MTMR6;ENSG00000139505|ENST00000381801|MTMR6	nc|ENSG00000139505|Q9Y217-2|MTMR6	nc|ENSG00000139505|Q9Y217-2|MTMR6	MULTI-MSMS	OvCa99_classI_Rep5	1	538.2811279296875	2	538.28018	1074.54581	0.0091692	4.9356E-06	0.066598	3.5849E-05	0.075768	4.0784E-05	538.280232918612	62.177	0.82924	62.177	61.912	62.741	0					39	19	3	0	0	0	0.2077	1	5522	5522		75.043	6.2565	1	1016600			52827	4777	43694	43730	57441	57441					0.011516708121462216
SESIAAFIQRL	11	Unmodified	_SESIAAFIQRL_					0	0	0		nc|ENSG00000204463|P46379-4|BAG6;nc|ENSG00000204463|P46379-5|BAG6;nc|ENSG00000204463|P46379-2|BAG6;nc|ENSG00000204463|P46379|BAG6;ENSG00000204463|ENST00000676615|BAG6	nc|ENSG00000204463|P46379-4|BAG6	nc|ENSG00000204463|P46379-4|BAG6	MULTI-MSMS	OvCa9_classI_Rep3	3	412.23138427734375	3	412.231189	1233.67174	1.934	0.00079726	-0.68164	-0.00028099	1.2524	0.00051626	412.2308161483838	65.879	3.828	62.933	62.452	66.28	-2.9459					181	75	4	0	0	0	0.71191	1	2699	2699		22.562	4.0305	1	1016400			52828	8987	43695	43731	57442	57442					0.06424757597551434
SESKGKVQL	9	Unmodified	_SESKGKVQL_					0	0	0		ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	MULTI-MSMS	OvCa99_classI_Rep5	1	488.27685546875	2	488.277106	974.53966	-0.82361	-0.00040215	0.81851	0.00039966	-0.005092	-2.4863E-06	488.277260455164	33.945	0.62299	33.945	33.728	34.351	0					32	12	4	0	0	0	0.40818	1	1598	1598		51.193	10.415	1	280490			52829	2506	43696	43732	57443	57443					0.051371525806075624
SESKNKIR	8	Unmodified	_SESKNKIR_					0	0	0		ENSG00000214787|ENST00000651255|MS4A4E	ENSG00000214787|ENST00000651255|MS4A4E	ENSG00000214787|ENST00000651255|MS4A4E	MSMS	OvCa99_classI_Rep5	1	481.2746276855469	2	481.274898	960.535243	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.494	1	33.494	32.994	33.994	0								0	0	0	0.30129	1	1543	1543		47.916	1.9434	1				52830	9182	43697	43733	57444	57444					0.05339688157710043
SESKNYIAL	9	Unmodified	_SESKNYIAL_					0	0	0		ENST00000507765.1_1_4:6290695-6304192:+|nuORF;ENSG00000109501|ENST00000226760|WFS1;WFS1|p.I250Lfs*7|1|0.42|ENSG00000109501|chr4:6295074-6295075|-/ACTATACATCCTGCTTCCCT|frameshift_variant;WFS1|p.C360Sfs*82|1|0.31|ENSG00000109501|chr4:6300874-6300874|G/-|frameshift_variant	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	512.7697143554688	2	512.769114	1023.52368	1.8137	0.00093003	0.36914	0.00018928	2.1829	0.0011193	512.7691426174409	74.843	0.81407	74.843	74.478	75.292	0					40	19	3	0	0	0	0.062324	1	7418	7418		111.65	37.393	1	2020500			52831	2716	43698	43734	57445	57445					0.012854463436951846
SESKNYIAL	9	Unmodified	_SESKNYIAL_					0	0	0		ENST00000507765.1_1_4:6290695-6304192:+|nuORF;ENSG00000109501|ENST00000226760|WFS1;WFS1|p.I250Lfs*7|1|0.42|ENSG00000109501|chr4:6295074-6295075|-/ACTATACATCCTGCTTCCCT|frameshift_variant;WFS1|p.C360Sfs*82|1|0.31|ENSG00000109501|chr4:6300874-6300874|G/-|frameshift_variant	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	ENST00000507765.1_1_4:6290695-6304192:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	512.769114	1023.52368	-0.57589	-0.0002953	1.5592	0.00079949	0.98327	0.00050419	513.2717891263009	76.392	0.62759	74.538	74.202	74.83	-1.854	-0.15225	0.001127	NaN	111.65	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24968			52832	2716	43698	43734							0.012854463436951846
SESKVQSFL	9	Unmodified	_SESKVQSFL_					0	0	0		nc|ENSG00000197712|Q8IWE2-2|FAM114A1;ENSG00000197712|ENST00000358869|FAM114A1	nc|ENSG00000197712|Q8IWE2-2|FAM114A1	nc|ENSG00000197712|Q8IWE2-2|FAM114A1	MULTI-MSMS	OvCa99_classI_Rep5	1	512.7696533203125	2	512.769114	1023.52368	1.9448	0.00099724	0.5091	0.00026105	2.4539	0.0012583	512.769167848502	77.489	0.71558	77.489	77.252	77.968	0					34	16	4	0	0	0	0.13504	2	7818	7818;7838		87.696	10.85	1	1455800			52833	8738	43699	43735	57446;57447	57446					0.01285446343717922
SESKVQSFL	9	Unmodified	_SESKVQSFL_					0	0	0		nc|ENSG00000197712|Q8IWE2-2|FAM114A1;ENSG00000197712|ENST00000358869|FAM114A1	nc|ENSG00000197712|Q8IWE2-2|FAM114A1	nc|ENSG00000197712|Q8IWE2-2|FAM114A1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	512.769114	1023.52368	0.3606	0.00018491	1.8772	0.00096258	2.2378	0.0011475	512.7686854570046	80.172	0.55298	77.832	77.612	78.165	-2.3399	0.17159	0.0013385	NaN	87.696	17	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23300			52834	8738	43699	43735							0.01285446343717922
SESLPVRTL	9	Unmodified	_SESLPVRTL_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	OvCa99_classI_Rep5	1	501.2860107421875	2	501.284931	1000.55531	2.2702	0.001138	0.12829	6.4309E-05	2.3984	0.0012023	501.2847126480099	80.171	1.3243	80.171	79.625	80.949	0					72	31	4	0	0	0	0.018335	2	8219	8188;8219		148.99	51.353	1	13176000			52835	1532	43700	43736	57448;57449	57449					0.05505439097669296
SESLPVRTL	9	Unmodified	_SESLPVRTL_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	OvCa9_classI_Rep2	2	501.2848815917969	2	501.284931	1000.55531	-0.12416	-6.224E-05	-0.54207	-0.00027173	-0.66623	-0.00033397	501.284635659473	81.32	3.1475	79.672	78.021	81.169	-1.6485					158	61	5	0	0	0	0.0086488	12	6903	6864;6867;6873;6879;6885;6891;6897;6903;6910;6916;6922;6929		176.09	66.785	1	2226800			52836	1532	43700	43736	57450;57451;57452;57453;57454;57455;57456;57457;57458;57459;57460;57461	57457					0.05505439097669296
SESLPVRTL	9	Unmodified	_SESLPVRTL_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2858581542969	2	501.284931	1000.55531	-0.97565	-0.00048908	0.12666	6.3493E-05	-0.84899	-0.00042559	501.2849818877494	81.657	2.3003	79.334	78.802	81.102	-2.3226					126	45	5	0	0	0	0.0070314	12	4547	4539;4541;4547;4553;4559;4565;4571;4577;4585;4591;4604;4610		185.55	72.138	1	5770900			52837	1532	43700	43736	57462;57463;57464;57465;57466;57467;57468;57469;57470;57471;57472;57473	57464					0.05505439097669296
SESLPVRTL	9	Unmodified	_SESLPVRTL_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.2857666015625	2	501.284931	1000.55531	-1.1722	-0.00058763	0.25492	0.00012779	-0.91732	-0.00045984	501.28505124516994	82.032	2.1885	79.349	78.718	80.906	-2.683					121	44	4	0	0	0	0.0079861	4	6775	6751;6763;6775;6787		200.16	70.474	1	4636200			52838	1532	43700	43736	57474;57475;57476;57477	57476					0.05505439097669296
SESPIEKVL	9	Unmodified	_SESPIEKVL_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B;MAP1B|p.C1613Mfs*15|1|0.05|ENSG00000131711|chr5:72198190-72198191|-/G|frameshift_variant	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MULTI-MSMS	OvCa99_classI_Rep5	1	501.2800598144531	2	501.279315	1000.54408	2.9669	0.0014873	-2.249	-0.0011274	0.71789	0.00035987	501.27891072136987	87.995	0.96204	87.995	87.505	88.467	0					68	22	4	0	0	0	0.11471	2	9338	9338;9368		93.195	16.421	1	2625700			52839	4083	43701	43737	57478;57479	57478					0.04382617003534506
SESPIEKVL	9	Unmodified	_SESPIEKVL_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B;MAP1B|p.C1613Mfs*15|1|0.05|ENSG00000131711|chr5:72198190-72198191|-/G|frameshift_variant	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MULTI-MSMS	OvCa9_classI_Rep2	2	501.27899169921875	2	501.279315	1000.54408	1.2538	0.00062852	-1.3493	-0.00067635	-0.095419	-4.7831E-05	501.2785872373174	89.561	2.1397	88.259	87.642	89.781	-1.302					116	42	5	0	0	0	0.045281	6	7872	7872;7884;7890;7896;7902;7908		122.18	38.242	1	522140			52840	4083	43701	43737	57480;57481;57482;57483;57484;57485	57480					0.04382617003534506
SESPIEKVL	9	Unmodified	_SESPIEKVL_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B;MAP1B|p.C1613Mfs*15|1|0.05|ENSG00000131711|chr5:72198190-72198191|-/G|frameshift_variant	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MULTI-MSMS	OvCa9_classI_Rep3	3	501.280517578125	2	501.279315	1000.54408	-0.92387	-0.00046312	0.89307	0.00044768	-0.030799	-1.5439E-05	501.27968142100843	90.182	1.9359	88.101	87.541	89.477	-2.0805					78	37	3	0	0	0	0.035142	4	5579	5574;5579;5586;5593		131.03	37.836	1	806780			52841	4083	43701	43737	57486;57487;57488;57489	57487					0.04382617003534506
SESPIEKVL	9	Unmodified	_SESPIEKVL_					0	0	0		ENSG00000131711|ENST00000296755|MAP1B;MAP1B|p.C1613Mfs*15|1|0.05|ENSG00000131711|chr5:72198190-72198191|-/G|frameshift_variant	ENSG00000131711|ENST00000296755|MAP1B	ENSG00000131711|ENST00000296755|MAP1B	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.2807312011719	2	501.279315	1000.54408	-0.52465	-0.000263	0.22041	0.00011049	-0.30424	-0.00015251	501.2794414904473	90.715	2.0856	88.14	87.551	89.636	-2.575					105	40	5	0	0	0	0.074342	4	7810	7810;7818;7832;7845		104.75	27.972	1	719600			52842	4083	43701	43737	57490;57491;57492;57493	57490					0.04382617003534506
SESPVWVKL	9	Unmodified	_SESPVWVKL_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MSMS	OvCa99_classI_Rep5	1	522.7892456054688	2	522.78985	1043.56515	1.3466	0.00070397	0.37947	0.00019838	1.726	0.00090235	522.7898984539826	102.95	1.092	102.95	102.72	103.81	0					60	25	4	0	0	0	0.16562	1	11521	11521		82.241	18.033	1	4088400			52843	5150	43702	43738	57494	57494					0.04510627103036313
SESPVWVKL	9	Unmodified	_SESPVWVKL_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	522.78985	1043.56515	-0.48485	-0.00025347	0.36032	0.00018837	-0.12453	-6.5102E-05	522.7897718164709	103.55	1.0871	102.9	102.56	103.65	-0.64796	0.0060501	0.00022557	NaN	82.241	36	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183920			52844	5150	43702	43738							0.04510627103036313
SESPVWVKL	9	Unmodified	_SESPVWVKL_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	522.78985	1043.56515	0.21088	0.00011025	-0.51384	-0.00026863	-0.30296	-0.00015838	522.7894152434782	104.29	1.2997	102.85	102.6	103.9	-1.4347	-0.038857	-0.00068844	NaN	82.241	34	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185770			52845	5150	43702	43738							0.04510627103036313
SESPVWVKL	9	Unmodified	_SESPVWVKL_					0	0	0		nc|ENSG00000144426|Q6ZS30-1|NBEAL1;nc|ENSG00000144426|Q6ZS30|NBEAL1;ENSG00000144426|ENST00000683969|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	nc|ENSG00000144426|Q6ZS30-1|NBEAL1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	522.78985	1043.56515	-0.67245	-0.00035155	0.50057	0.00026169	-0.17187	-8.9854E-05	522.7898000760781	104.99	1.2625	102.87	102.43	103.69	-2.1192	-0.024701	0.00037221	NaN	82.241	35	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157000			52846	5150	43702	43738							0.04510627103036313
SESSASRPTL	10	Unmodified	_SESSASRPTL_					0	0	0		ENSG00000068097|ENST00000184956|HEATR6	ENSG00000068097|ENST00000184956|HEATR6	ENSG00000068097|ENST00000184956|HEATR6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.7506713867188	2	517.759278	1033.504	-0.84465	-0.00043732	-4.0458	-0.0020947	-4.8904	-0.0025321	517.7564998385172	48.419	0.87538	45.311	44.938	45.814	-3.1077					24	16	2	0	0	0	0.026849	1	2675	2675		13.454	0	1	28540			52847	1386	43703	43739	57495	57495					-0.011409296670308322
SESTAESHL	9	Unmodified	_SESTAESHL_					0	0	0		ENSG00000100211|ENST00000216029|CBY1;EMID1-CBY1|1|fusion	ENSG00000100211|ENST00000216029|CBY1	ENSG00000100211|ENST00000216029|CBY1	MULTI-MSMS	OvCa99_classI_Rep5	1	480.717529296875	2	480.717079	959.419604	-0.33399	-0.00016056	0.18251	8.7737E-05	-0.15148	-7.2818E-05	480.71704033933526	38.814	0.71279	38.814	38.619	39.332	0					34	15	3	0	0	0	0.16524	1	2232	2232		82.305	0	1	715400			52848	794	43704	43740	57496	57496					-0.06172880483802601
SESTNQRVL	9	Unmodified	_SESTNQRVL_					0	0	0		nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000158604|ENST00000457408|TMED4;ENST00000507723.1_1_5:177021070-177022414:+|nuORF;ENST00000513799.5_1_5:177019550-177022414:+|nuORF;ENSG00000184840|ENST00000332598|TMED9	nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000184840|ENST00000332598|TMED9	nc|ENSG00000158604|Q7Z7H5-2|TMED4	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.26513671875	2	517.26727	1032.51999	-0.099176	-5.13E-05	0.16674	8.6251E-05	0.067568	3.4951E-05	517.2671442396913	47.87	1.4199	44.763	44.237	45.657	-3.1077					85	27	5	0	0	0	0.22621	1	2602	2602		71.877	5.4482	1	452750			52849	5963;8194	43705	43741	57497	57497					0.0050277656987418595
SESTNQRVL	9	Unmodified	_SESTNQRVL_					0	0	0		nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000158604|ENST00000457408|TMED4;ENST00000507723.1_1_5:177021070-177022414:+|nuORF;ENST00000513799.5_1_5:177019550-177022414:+|nuORF;ENSG00000184840|ENST00000332598|TMED9	nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000184840|ENST00000332598|TMED9	nc|ENSG00000158604|Q7Z7H5-2|TMED4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	517.26727	1032.51999	-0.43789	-0.00022651	0.67375	0.00034851	0.23586	0.000122	517.2672935262218	47.753	0.84175	45.043	44.687	45.529	-2.7097	0.14036	0.00024197	NaN	71.877	39	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88343			52850	5963;8194	43705	43741							0.0050277656987418595
SETAVAKNQAL	11	Unmodified	_SETAVAKNQAL_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	OvCa99_classI_Rep5	1	566.3082275390625	2	566.303852	1130.59315	-0.073878	-4.1837E-05	-0.68316	-0.00038688	-0.75704	-0.00042871	566.3034040077255	49.053	0.43603	49.053	48.851	49.287	0					30	9	5	0	0	0	0.064584	1	3635	3635		106.68	26.228	1	2848700			52851	4070	43706	43742	57498	57498					0.033079052924676944
SETAVAKNQAL	11	Unmodified	_SETAVAKNQAL_					0	0	0		nc|ENSG00000131473|P53396-2|ACLY;ENSG00000131473|ENST00000352035|ACLY;nc|ENSG00000131473|P53396-3|ACLY	nc|ENSG00000131473|P53396-2|ACLY	nc|ENSG00000131473|P53396-2|ACLY	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.3057861328125	2	566.303852	1130.59315	0.30049	0.00017017	-0.35555	-0.00020135	-0.055058	-3.118E-05	566.3035032969271	52.614	1.411	49.406	49.145	50.556	-3.208					88	27	5	0	0	0	0.023644	1	3159	3159		152.06	38.649	1	732130			52852	4070	43706	43742	57499	57499					0.033079052924676944
SETFLLPHL	9	Unmodified	_SETFLLPHL_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65735015-65739972:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	OvCa9_classI_Rep2	2	528.790771484375	2	528.78985	1055.56515	-0.58696	-0.00031038	0.61729	0.00032642	0.030331	1.6039E-05	528.7899916848489	122.95	0.83875	122.73	122.41	123.25	-0.21803					40	16	3	0	0	0	0.043206	4	11908	11908;11915;11921;11929		123.99	32.281	1	118900			52853	4025	43707	43743	57500;57501;57502;57503	57500					0.03958627103043
SETFLLPHL	9	Unmodified	_SETFLLPHL_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65735015-65739972:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	OvCa9_classI_Rep3	3	528.7911376953125	2	528.78985	1055.56515	1.1707	0.00061907	-1.455	-0.00076939	-0.28428	-0.00015032	528.7889216910488	123.69	0.77116	122.66	122.36	123.13	-1.0377					35	14	3	0	0	0	0.073432	4	9560	9552;9560;9566;9571		105.27	29.212	1	139890			52854	4025	43707	43743	57504;57505;57506;57507	57505					0.03958627103043
SETFLLPHL	9	Unmodified	_SETFLLPHL_					0	0	0		ENSG00000130935|ENST00000253247|NOL11;ENST00000583108.5_1_17:65735015-65739972:+|nuORF	ENSG00000130935|ENST00000253247|NOL11	ENSG00000130935|ENST00000253247|NOL11	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.7907104492188	2	528.78985	1055.56515	-1.4054	-0.00074315	1.3923	0.00073623	-0.013097	-6.9254E-06	528.7903060219585	124.07	1.2205	122.68	122.37	123.59	-1.3908					47	23	3	0	0	0	0.11842	2	11755	11746;11755		92.191	15.344	1	137940			52855	4025	43707	43743	57508;57509	57509					0.03958627103043
SETGHVYTF	9	Unmodified	_SETGHVYTF_					0	0	0		SRF|p.S237Vfs*11|1|0.08|ENSG00000112658|chr6:43174041-43174042|-/GTCCCCTTCCTGGGCTCATGGCAGGATGTTT|frameshift_variant;ENSG00000112658|ENST00000265354|SRF	SRF|p.S237Vfs*11|1|0.08|ENSG00000112658|chr6:43174041-43174042|-/GTCCCCTTCCTGGGCTCATGGCAGGATGTTT|frameshift_variant	SRF|p.S237Vfs*11|1|0.08|ENSG00000112658|chr6:43174041-43174042|-/GTCCCCTTCCTGGGCTCATGGCAGGATGTTT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.2733764648438	2	520.737814	1039.46108	-1.2425	-0.00064701	2.7564	0.0014354	1.5139	0.00078835	520.7395310699409	73.596	0.58097	70.2	69.881	70.462	-3.3961					26	11	3	0	0	0	0.027426	1	5711	5711		63.306	15.391	1	128300			52856	2916	43708	43744	57510	57510					-0.057076997244848826
SETGHVYTF	9	Unmodified	_SETGHVYTF_					0	0	0		SRF|p.S237Vfs*11|1|0.08|ENSG00000112658|chr6:43174041-43174042|-/GTCCCCTTCCTGGGCTCATGGCAGGATGTTT|frameshift_variant;ENSG00000112658|ENST00000265354|SRF	SRF|p.S237Vfs*11|1|0.08|ENSG00000112658|chr6:43174041-43174042|-/GTCCCCTTCCTGGGCTCATGGCAGGATGTTT|frameshift_variant	SRF|p.S237Vfs*11|1|0.08|ENSG00000112658|chr6:43174041-43174042|-/GTCCCCTTCCTGGGCTCATGGCAGGATGTTT|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	520.737814	1039.46108	0.45742	0.00023819	0.10976	5.7157E-05	0.56718	0.00029535	520.7377190760333	72.593	0.99315	70.193	69.592	70.585	-2.3999	-0.0035403	-0.00042879	NaN	63.306	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41429			52857	2916	43708	43744							-0.057076997244848826
SETGSDTGSTV	11	Unmodified	_SETGSDTGSTV_					0	0	0		RFX3|p.Q83Vfs*5|1|0.22|ENSG00000080298|chr9:3330438-3330486|TCCCTTGAGTATCAAAGTAATTCCCTCCAGTATTTTGGCTGTACATCTG/-|frameshift_variant;nc|ENSG00000080298|P48380-3|RFX3;nc|ENSG00000080298|P48380-2|RFX3;ENSG00000080298|ENST00000617270|RFX3	RFX3|p.Q83Vfs*5|1|0.22|ENSG00000080298|chr9:3330438-3330486|TCCCTTGAGTATCAAAGTAATTCCCTCCAGTATTTTGGCTGTACATCTG/-|frameshift_variant	RFX3|p.Q83Vfs*5|1|0.22|ENSG00000080298|chr9:3330438-3330486|TCCCTTGAGTATCAAAGTAATTCCCTCCAGTATTTTGGCTGTACATCTG/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.7670288085938	2	520.722558	1039.43056	-0.57807	-0.00030101	2.4346	0.0012677	1.8565	0.00096672	520.7240444012774	76.17	0.20702	73.799	73.67	73.877	-2.3715					5	3	2	0	0	0	0.024886	1	3906	3906		82.241	38.124	1	5388.7			52858	1633	43709	43745	57511	57511					-0.08757522900168624
SETKKGFYSL	10	Unmodified	_SETKKGFYSL_					0	0	0		nc|ENSG00000155926|Q13239-2|SLA;ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA	nc|ENSG00000155926|Q13239-2|SLA	nc|ENSG00000155926|Q13239-2|SLA	MULTI-MSMS	OvCa9_classI_Rep2	2	580.3024291992188	2	580.303321	1158.59209	-1.4545	-0.00084403	1.4889	0.00086399	0.034406	1.9966E-05	580.3040479313358	63.681	2.5997	60.937	60.374	62.973	-2.7444					149	49	6	0	0	0	0.18931	5	4821	4813;4815;4821;4842;4849		96.034	20.973	1	676090			52859	5810	43710	43746	57512;57513;57514;57515;57516	57514					0.01913690923561262
SETKKGFYSL	10	Unmodified	_SETKKGFYSL_					0	0	0		nc|ENSG00000155926|Q13239-2|SLA;ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA	nc|ENSG00000155926|Q13239-2|SLA	nc|ENSG00000155926|Q13239-2|SLA	MULTI-MSMS	OvCa9_classI_Rep4_	4	580.3046264648438	2	580.303321	1158.59209	-0.37038	-0.00021493	0.40633	0.0002358	0.035953	2.0864E-05	580.3034348989673	64.544	1.6008	61.058	60.773	62.374	-3.4854					116	32	6	0	0	0	0.18931	1	4591	4591		96.034	8.3372	1	1360800			52860	5810	43710	43746	57517	57517					0.01913690923561262
SETKKGFYSL	10	Unmodified	_SETKKGFYSL_					0	0	0		nc|ENSG00000155926|Q13239-2|SLA;ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA	nc|ENSG00000155926|Q13239-2|SLA	nc|ENSG00000155926|Q13239-2|SLA	MULTI-MATCH	OvCa99_classI_Rep5	1		2	580.303321	1158.59209	-0.41031	-0.0002381	-5.1828	-0.0030076	-5.5932	-0.0032457	580.3001407005289	60.75	0.55091	60.75	60.392	60.943	0	-0.1651	-0.0065341	NaN	96.034	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	207620			52861	5810	43710	43746							0.01913690923561262
SETNDTKVL	9	Unmodified	_SETNDTKVL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000453838.2_1_1:182928211-182928406:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa99_classI_Rep5	1	503.75726318359375	2	503.756204	1005.49785	-0.48617	-0.00024491	0.17199	8.6639E-05	-0.31419	-0.00015827	503.75624887126673	48.256	1.0453	48.256	47.941	48.986	0					59	22	4	0	0	0	0.051592	1	3541	3541		117.81	5.4001	1	5058300			52862	2808	43711	43747	57518	57518					-0.004674478985634778
SETNDTKVL	9	Unmodified	_SETNDTKVL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000453838.2_1_1:182928211-182928406:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa9_classI_Rep2	2	503.755859375	2	503.756204	1005.49785	-1.6659	-0.00083919	1.1081	0.0005582	-0.55779	-0.00028099	503.7567611496094	52.82	2.3803	50.006	49.591	51.972	-2.8139					140	47	5	0	0	0	0.0076265	15	3549	3519;3525;3531;3537;3543;3549;3555;3561;3567;3573;3579;3586;3592;3598;3613		195.06	62.126	1	2439100			52863	2808	43711	43747	57519;57520;57521;57522;57523;57524;57525;57526;57527;57528;57529;57530;57531;57532;57533	57524					-0.004674478985634778
SETNDTKVL	9	Unmodified	_SETNDTKVL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000453838.2_1_1:182928211-182928406:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.7569885253906	2	503.756204	1005.49785	-1.0912	-0.00054968	0.34642	0.00017451	-0.74474	-0.00037517	503.7564424724959	52.882	3.3035	49.674	49.247	52.55	-3.208					180	64	6	0	0	0	0.0076265	10	3187	3176;3187;3199;3211;3223;3235;3247;3259;3272;3284		195.06	64.032	1	13809000			52864	2808	43711	43747	57534;57535;57536;57537;57538;57539;57540;57541;57542;57543	57535					-0.004674478985634778
SETTLTIHW	9	Unmodified	_SETTLTIHW_					0	0	0			REV__tr|A0A553SRB9|A0A553SRB9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00780PE=4SV=1	REV__tr|A0A553SRB9|A0A553SRB9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00780PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2719116210938	2	544.274564	1086.53457	-0.68416	-0.00037237	2.103	0.0011446	1.4188	0.00077223	544.7771757863951	35.118	0.24144	35.118	35.004	35.246	0					6	4	2	0	0	0	0.027462	1	1735	1735		23.042	0	1	16805	+		52865	30717	43712	43748	57544	57544					-0.005231512820046191
SETTSVCKPEQ	11	Unmodified	_SETTSVCKPEQ_					0	0	0		ENST00000586791.5_1_18:60999017-61011732:-|nuORF;nc|ENSG00000119537|Q06136-2|KDSR;ENSG00000119537|ENST00000645214|KDSR	ENST00000586791.5_1_18:60999017-61011732:-|nuORF	ENST00000586791.5_1_18:60999017-61011732:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	403.5196533203125	3	403.520299	1207.53907	0.32911	0.0001328	-2.1143	-0.00085314	-1.7851	-0.00072034	403.5193021741061	27.666	0.55004	27.666	27.491	28.041	0					30	10	5	0	0	0	0.60035	1	834	834		44.639	0.98865	1	448990			52866	3369	43713	43749	57545	57545					-0.056400549213776685
SEVDLTRSFSF	11	Unmodified	_SEVDLTRSFSF_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MULTI-MSMS	OvCa9_classI_Rep4_	4	644.3140869140625	2	644.314417	1286.61428	-0.9725	-0.0006266	1.1174	0.00071998	0.14494	9.3384E-05	644.3149827461991	118.94	1.0912	117.6	117.31	118.4	-1.3444					34	20	3	0	0	0	0.41331	1	11160	11160		60.167	12.207	1	106260			52867	2124	43714	43750	57546	57546					-0.017561293986773308
SEVDLTRSFSF	11	Unmodified	_SEVDLTRSFSF_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	644.314417	1286.61428	-2.2745	-0.0014655	2.1168	0.0013639	-0.15767	-0.00010159	644.3156504890145	118.06	0.99445	117.91	117.64	118.63	-0.14755	0.18754	0.0013237	NaN	60.167	35	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91527			52868	2124	43714	43750							-0.017561293986773308
SEVDLTRSFSF	11	Unmodified	_SEVDLTRSFSF_					0	0	0		nc|ENSG00000100938|Q9P2T1-3|GMPR2;ENSG00000100938|ENST00000399440|GMPR2;nc|ENSG00000100938|Q9P2T1-2|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	nc|ENSG00000100938|Q9P2T1-3|GMPR2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	644.314417	1286.61428	-0.11034	-7.1093E-05	-0.22134	-0.00014261	-0.33168	-0.0002137	644.3141703486625	118.69	0.89352	117.66	117.39	118.28	-1.0271	-0.059933	-0.0016893	NaN	60.167	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77648			52869	2124	43714	43750							-0.017561293986773308
SEVFKMLQ	8	Unmodified	_SEVFKMLQ_					0	0	0		nc|ENSG00000120913|Q96JY6-4|PDLIM2;ENSG00000120913|ENST00000409417|PDLIM2;nc|ENSG00000120913|Q96JY6-3|PDLIM2;nc|ENSG00000120913|Q96JY6-5|PDLIM2	nc|ENSG00000120913|Q96JY6-4|PDLIM2	nc|ENSG00000120913|Q96JY6-4|PDLIM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.2920227050781	2	491.257328	980.500103	1.8675	0.00091742	-0.15309	-7.5205E-05	1.7144	0.00084222	491.25721165873875	100.05	0.42583	100.05	99.896	100.32	0					15	9	3	0	0	0	0.028476	1	11078	11078		37.159	15.457	1	253480			52870	3460	43715	43751	57547	57547					0.009073093055576464
SEVFLNLKI	9	Unmodified	_SEVFLNLKI_					0	0	0		tr|A0A553SP97|A0A553SP97_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_25990PE=3SV=1	tr|A0A553SP97|A0A553SP97_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_25990PE=3SV=1	tr|A0A553SP97|A0A553SP97_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_25990PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.30615234375	2	531.813325	1061.6121	2.2902	0.001218	-0.24117	-0.00012826	2.0491	0.0010897	531.8130809376223	97.066	0.8539	97.066	96.668	97.522	0					38	19	4	0	0	0	0.02744	1	10700	10700		62.107	17.73	1	722050			52871	34019	43716	43752	57548	57548					0.08375486654176711
SEVGPFHGQP	10	Unmodified	_SEVGPFHGQP_					0	0	0		ENSG00000177169|ENST00000321867|ULK1	ENSG00000177169|ENST00000321867|ULK1	ENSG00000177169|ENST00000321867|ULK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.2816162109375	2	527.751256	1053.48796	0.041224	2.1756E-05	3.7553	0.0019819	3.7965	0.0020036	527.7531385736739	110.5	1.2626	108.9	108.6	109.86	-1.6011					54	23	3	0	0	0	0.026659	1	10172	10172		23.523	0	1	74872			52872	7663	43717	43753	57549	57549					-0.0366459111326094
SEVGTDHKL	9	Unmodified	_SEVGTDHKL_					0	0	0		nc|ENSG00000163946|Q9UK61-2|TASOR;nc|ENSG00000163946|Q9UK61-3|TASOR;nc|ENSG00000163946|Q9UK61-4|TASOR;ENSG00000163946|ENST00000683822|TASOR	nc|ENSG00000163946|Q9UK61-2|TASOR	nc|ENSG00000163946|Q9UK61-2|TASOR	MULTI-MSMS	OvCa99_classI_Rep5	1	493.250732421875	2	493.251089	984.487624	-0.8222	-0.00040555	0.56609	0.00027922	-0.25611	-0.00012633	493.2512699093748	36.234	0.90141	36.234	35.939	36.84	0					44	19	5	0	0	0	0.22621	1	1892	1892		71.877	3.0906	1	562130			52873	6384	43718	43754	57550	57550					-0.005240108331463489
SEVILENGKL	10	Unmodified	_SEVILENGKL_					0	0	0		nc|ENSG00000150093|P05556-2|ITGB1;ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;ITGB1-SEPT2|1|fusion;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	nc|ENSG00000150093|P05556-2|ITGB1	nc|ENSG00000150093|P05556-2|ITGB1	MULTI-MSMS	OvCa99_classI_Rep5	1	551.31298828125	2	551.311146	1100.60774	1.1285	0.00062216	0.97406	0.00053701	2.1026	0.0011592	551.3113993210252	83.523	1.0126	83.523	83.249	84.261	0					47	23	4	0	0	0	0.0005804	1	8680	8680		181.41	88.212	1	3463500			52874	5500	43719	43755	57551	57551					0.061459774406330325
SEVILENGKL	10	Unmodified	_SEVILENGKL_					0	0	0		nc|ENSG00000150093|P05556-2|ITGB1;ENSG00000150093|ENST00000302278|ITGB1;nc|ENSG00000150093|P05556-5|ITGB1;ITGB1-SEPT2|1|fusion;nc|ENSG00000150093|P05556-4|ITGB1;nc|ENSG00000150093|P05556-3|ITGB1	nc|ENSG00000150093|P05556-2|ITGB1	nc|ENSG00000150093|P05556-2|ITGB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.3137817382812	2	551.311146	1100.60774	1.2781	0.00070462	-1.4059	-0.00077508	-0.12779	-7.0454E-05	551.3102570270134	85.661	1.3261	83.015	82.66	83.986	-2.6463					69	26	4	0	0	0	4.4402E-06	2	7216	7216;7226		195.05	65.363	1	470450			52875	5500	43719	43755	57552;57553	57552					0.061459774406330325
SEVIRRHKG	9	Unmodified	_SEVIRRHKG_					0	0	0		tr|A0A553STV1|A0A553STV1_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_05825PE=3SV=1	tr|A0A553STV1|A0A553STV1_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_05825PE=3SV=1	tr|A0A553STV1|A0A553STV1_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_05825PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.78515625	2	541.314889	1080.61522	-0.35248	-0.0001908	-2.1179	-0.0011465	-2.4704	-0.0013373	541.3146547322689	91.19	0.50385	89.166	88.979	89.483	-2.0241					19	9	3	0	0	0	0.027462	1	5687	5687		21.96	7.095	1	36197			52876	34538	43720	43756	57554	57554					0.0781417455157225
SEVKPEVSL	9	Unmodified	_SEVKPEVSL_					0	0	0		ENSG00000126947|ENST00000372829|ARMCX1	ENSG00000126947|ENST00000372829|ARMCX1	ENSG00000126947|ENST00000372829|ARMCX1	MULTI-MSMS	OvCa99_classI_Rep5	1	494.2723083496094	2	494.27149	986.528426	0.17257	8.5295E-05	0.15033	7.4305E-05	0.3229	0.0001596	494.27147863914024	73.871	0.57767	73.871	73.636	74.214	0					34	14	4	0	0	0	0.094791	1	7267	7267		98.582	2.7668	1	3688100			52877	3813	43721	43757	57555	57555					0.03462330486490828
SEVKPEVSL	9	Unmodified	_SEVKPEVSL_					0	0	0		ENSG00000126947|ENST00000372829|ARMCX1	ENSG00000126947|ENST00000372829|ARMCX1	ENSG00000126947|ENST00000372829|ARMCX1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	494.27149	986.528426	-0.23289	-0.00011511	0.51783	0.00025595	0.28495	0.00014084	494.2716899591967	75.637	2.1255	73.783	72.913	75.038	-1.854	0.11482	0.00030726	NaN	98.582	81	40	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67920			52878	3813	43721	43757							0.03462330486490828
SEVKPEVSL	9	Unmodified	_SEVKPEVSL_					0	0	0		ENSG00000126947|ENST00000372829|ARMCX1	ENSG00000126947|ENST00000372829|ARMCX1	ENSG00000126947|ENST00000372829|ARMCX1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	494.27149	986.528426	-0.85371	-0.00042196	-4.242	-0.0020967	-5.0957	-0.0025187	494.26686928194835	75.919	0.35613	73.547	73.417	73.773	-2.3715	-0.12071	-0.004398	NaN	98.582	11	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7111.9			52879	3813	43721	43757							0.03462330486490828
SEVKPEVSL	9	Unmodified	_SEVKPEVSL_					0	0	0		ENSG00000126947|ENST00000372829|ARMCX1	ENSG00000126947|ENST00000372829|ARMCX1	ENSG00000126947|ENST00000372829|ARMCX1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	494.27149	986.528426	-0.046981	-2.3221E-05	0.098085	4.8481E-05	0.051105	2.526E-05	494.2713931584564	76.409	1.3313	73.471	72.79	74.121	-2.9389	-0.19719	-0.00010768	NaN	98.582	63	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220440			52880	3813	43721	43757							0.03462330486490828
SEVKTVTV	8	Unmodified	_SEVKTVTV_					0	0	0		nc|ENSG00000128918|O94788-4|ALDH1A2;nc|ENSG00000128918|O94788-2|ALDH1A2;nc|ENSG00000128918|O94788-3|ALDH1A2;ENSG00000128918|ENST00000249750|ALDH1A2	nc|ENSG00000128918|O94788-4|ALDH1A2	nc|ENSG00000128918|O94788-4|ALDH1A2	MULTI-MSMS	OvCa9_classI_Rep4_	4	431.7484436035156	2	431.74765	861.480748	0.76388	0.0003298	-0.67239	-0.0002903	0.091495	3.9503E-05	431.747217982418	56.192	1.6215	52.897	52.567	54.188	-3.2944					60	31	3	0	0	0	0.53252	1	3587	3587		74.255	10.949	1	371480			52881	3913	43722	43758	57556	57556					0.044466762862953146
SEVKTVTV	8	Unmodified	_SEVKTVTV_					0	0	0		nc|ENSG00000128918|O94788-4|ALDH1A2;nc|ENSG00000128918|O94788-2|ALDH1A2;nc|ENSG00000128918|O94788-3|ALDH1A2;ENSG00000128918|ENST00000249750|ALDH1A2	nc|ENSG00000128918|O94788-4|ALDH1A2	nc|ENSG00000128918|O94788-4|ALDH1A2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	431.74765	861.480748	-1.1925	-0.00051487	1.4346	0.0006194	0.24212	0.00010453	431.7482719638773	55.92	1.2381	53.116	52.78	54.018	-2.804	0.10929	0.00091661	NaN	74.255	41	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63161			52882	3913	43722	43758							0.044466762862953146
SEVKVSSEV	9	Unmodified	_SEVKVSSEV_					0	0	0		tr|A0A7D6VP89|A0A7D6VP89_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16270PE=3SV=1	tr|A0A7D6VP89|A0A7D6VP89_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16270PE=3SV=1	tr|A0A7D6VP89|A0A7D6VP89_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16270PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.2388610839844	2	482.253297	962.492041	-0.52677	-0.00025404	0.65689	0.00031679	0.13012	6.2749E-05	482.2535208085125	51.809	0.80272	51.809	51.544	52.347	0					36	18	3	0	0	0	0.027462	1	4018	4018		16.473	0	1	1879500			52883	34757	43723	43759	57557	57557					0.009294535897765854
SEVLKYEI	8	Unmodified	_SEVLKYEI_					0	0	0		nc|ENSG00000149177|Q12913-3|PTPRJ;ENSG00000149177|ENST00000418331|PTPRJ	nc|ENSG00000149177|Q12913-3|PTPRJ	nc|ENSG00000149177|Q12913-3|PTPRJ	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.7644348144531	2	490.768583	979.522613	-3.8369	-0.001883	-1.6173	-0.00079371	-5.4542	-0.0026767	490.76737842371836	153.9	0.52286	152.45	152.25	152.77	-1.4516					26	16	2	0	0	0	0.66992	1	15238	15238		49.442	0	1	19214			52884	15084	43724	43760	57558	57558					0.032032319747941074
SEVMGEPHL	9	Unmodified	_SEVMGEPHL_					0	0	0		ENSG00000132963|ENST00000380842|POMP	ENSG00000132963|ENST00000380842|POMP	ENSG00000132963|ENST00000380842|POMP	MULTI-MSMS	OvCa99_classI_Rep5	1	499.7358093261719	2	499.734217	997.453881	2.2239	0.0011114	-0.40146	-0.00020062	1.8224	0.00091073	499.7339327630424	76.183	1.0888	76.183	75.913	77.002	0					57	26	3	0	0	0	0.037627	2	7612	7612;7643		128.86	54.345	1	13416000			52885	4188	43725	43761	57559;57560	57559					-0.044947555965336505
SEVMGEPHL	9	Unmodified	_SEVMGEPHL_					0	0	0		ENSG00000132963|ENST00000380842|POMP	ENSG00000132963|ENST00000380842|POMP	ENSG00000132963|ENST00000380842|POMP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	499.734217	997.453881	-0.50496	-0.00025234	0.5255	0.00026261	0.020542	1.0265E-05	499.7343011785414	77.998	1.2347	76.209	75.571	76.805	-1.7894	0.074458	0.00071698	NaN	128.86	37	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63520			52886	4188	43725	43761							-0.044947555965336505
SEVMGEPHL	9	Unmodified	_SEVMGEPHL_					0	0	0		ENSG00000132963|ENST00000380842|POMP	ENSG00000132963|ENST00000380842|POMP	ENSG00000132963|ENST00000380842|POMP	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	499.734217	997.453881	-0.3344	-0.00016711	-1.3967	-0.00069797	-1.7311	-0.00086508	499.73391057034735	78.763	1.3216	76.011	75.761	77.082	-2.7514	-0.12283	-0.0012042	NaN	128.86	58	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250480			52887	4188	43725	43761							-0.044947555965336505
SEVMGEPHL	9	Oxidation (M)	_SEVM(Oxidation (M))GEPHL_		SEVM(1)GEPHL		SEVM(56)GEPHL	0	0	1		ENSG00000132963|ENST00000380842|POMP	ENSG00000132963|ENST00000380842|POMP	ENSG00000132963|ENST00000380842|POMP	MULTI-MSMS	OvCa9_classI_Rep3	3	507.73223876953125	2	507.731674	1013.4488	0.87453	0.00044403	-0.99995	-0.00050771	-0.12542	-6.3681E-05	507.73107539480856	64.609	1.4672	61.616	61.09	62.557	-2.9933					46	28	2	0	0	0	0.36502	1	2505	2505		55.504	16.698	1	54457			52888	4188	43725	43762	57561	57561		133			-0.057390594591424815
SEVMGEPHL	9	Oxidation (M)	_SEVM(Oxidation (M))GEPHL_		SEVM(1)GEPHL		SEVM(71)GEPHL	0	0	1		ENSG00000132963|ENST00000380842|POMP	ENSG00000132963|ENST00000380842|POMP	ENSG00000132963|ENST00000380842|POMP	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7324523925781	2	507.731674	1013.4488	-0.48016	-0.00024379	0.87172	0.0004426	0.39156	0.00019881	507.73186772658914	65.166	1.0163	61.68	61.358	62.374	-3.4854					67	20	4	0	0	0	0.22961	1	4678	4678		71.296	11.002	1	442150			52889	4188	43725	43762	57562	57562		133			-0.057390594591424815
SEVNPPLLVKV	11	Unmodified	_SEVNPPLLVKV_					0	0	0		tr|A0A553SFT1|A0A553SFT1_NIACIM48familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_09450PE=3SV=1	tr|A0A553SFT1|A0A553SFT1_NIACIM48familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_09450PE=3SV=1	tr|A0A553SFT1|A0A553SFT1_NIACIM48familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_09450PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8551025390625	2	597.858264	1193.70197	-1.5377	-0.00091935	-1.5701	-0.00093869	-3.1078	-0.001858	597.8570606153338	148.28	4.8676	146.85	145.38	150.25	-1.435					291	102	5	0	0	0	0.68399	1	14534	14534		35.152	2.4015	1	767860			52890	33073	43726	43763	57563	57563					0.11287116262769814
SEVQDRVML	9	Unmodified	_SEVQDRVML_					0	0	0		ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	MULTI-MSMS	OvCa99_classI_Rep5	1	538.7750244140625	2	538.773874	1075.53319	2.3788	0.0012816	-0.51866	-0.00027944	1.8602	0.0010022	538.7735488309662	76.094	1.9997	76.094	75.801	77.801	0					122	48	6	0	0	0	0.22035	2	7606	7606;7642		72.879	14.097	1	46513000			52891	3397	43727	43764	57564;57565	57564					-0.001551086423887682
SEVQDRVML	9	Unmodified	_SEVQDRVML_					0	0	0		ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	ENSG00000119801|ENST00000261353|YPEL5	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	538.773874	1075.53319	-0.97553	-0.00052559	2.4618	0.0013263	1.4862	0.00080075	538.7737333520922	79.211	1.1454	76.46	76.132	77.277	-2.7514	0.18281	0.0029947	NaN	72.879	83	23	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	529740			52892	3397	43727	43764							-0.001551086423887682
SEVSQVKETL	10	Unmodified	_SEVSQVKETL_					0	0	0		nc|ENSG00000130779|P30622-2|CLIP1;nc|ENSG00000130779|P30622-1|CLIP1;ENSG00000130779|ENST00000620786|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.7693481445312	2	560.298236	1118.58192	0.35941	0.00020138	-0.60264	-0.00033766	-0.24323	-0.00013628	560.2978070229404	65.257	0.43311	65.257	65.034	65.467	0					29	10	4	0	0	0	0.026516	1	5977	5977		72.243	29.847	1	927910			52893	4015	43728	43765	57566	57566					0.027370831983489552
SEVSTVLKL	9	Unmodified	_SEVSTVLKL_					0	0	0		ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1;nc|ENSG00000123143|Q16512-3|PKN1;ENST00000585839.5_1_19:14544333-14578454:+|nuORF;PKN1|p.M704Sfs*38|1|0.04|ENSG00000123143|chr19:14469475-14469475|T/-|frameshift_variant	ENSG00000123143|ENST00000242783|PKN1	ENSG00000123143|ENST00000242783|PKN1	MULTI-MSMS	OvCa9_classI_Rep3	3	488.28985595703125	2	488.289682	974.564812	-1.0754	-0.00052509	1.6054	0.0007839	0.53002	0.00025881	488.2903763938698	97.199	0.60883	95.44	95.209	95.818	-1.7595					19	11	2	0	0	0	0.070405	2	6439	6434;6439		107.01	35.13	1	290240			52894	3576	43729	43766	57567;57568	57568					0.0765120738318501
SEVSTVLKL	9	Unmodified	_SEVSTVLKL_					0	0	0		ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1;nc|ENSG00000123143|Q16512-3|PKN1;ENST00000585839.5_1_19:14544333-14578454:+|nuORF;PKN1|p.M704Sfs*38|1|0.04|ENSG00000123143|chr19:14469475-14469475|T/-|frameshift_variant	ENSG00000123143|ENST00000242783|PKN1	ENSG00000123143|ENST00000242783|PKN1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	488.289682	974.564812	1.8772	0.0009166	-0.020481	-1.0001E-05	1.8567	0.0009066	488.2898288390871	95.567	0.54047	95.567	95.328	95.869	0	0.10296	-0.00025771	NaN	107.01	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1130900			52895	3576	43729	43766							0.0765120738318501
SEVSTVLKL	9	Unmodified	_SEVSTVLKL_					0	0	0		ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1;nc|ENSG00000123143|Q16512-3|PKN1;ENST00000585839.5_1_19:14544333-14578454:+|nuORF;PKN1|p.M704Sfs*38|1|0.04|ENSG00000123143|chr19:14469475-14469475|T/-|frameshift_variant	ENSG00000123143|ENST00000242783|PKN1	ENSG00000123143|ENST00000242783|PKN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	488.289682	974.564812	0.50305	0.00024563	-0.29477	-0.00014393	0.20828	0.0001017	488.2895326169756	96.414	0.64526	95.386	95.013	95.658	-1.0281	-0.07823	-0.00052558	NaN	107.01	29	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224240			52896	3576	43729	43766							0.0765120738318501
SEVTAIQC	8	Unmodified	_SEVTAIQC_					0	0	0		ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	ENSG00000160294|ENST00000291688|MCM3AP	MULTI-SECPEP	OvCa99_classI_Rep5	1	425.7486572265625	2	425.702386	849.390218	-0.2204	-9.3827E-05	-0.12852	-5.471E-05	-0.34892	-0.00014854	425.70288116219376	38.728	0.17364	38.728	38.619	38.793	0					5	3	2	0	0	0	0.028476	1	2230	2230		13.775	5.544	1	61947			52897	6055	43730	43767	57569	57569					-0.04050116033647555
SEVTSSMQL	9	Unmodified	_SEVTSSMQL_					0	0	0			REV__ENST00000497057.1_1_1:201435546-201435651:-|nuORF	REV__ENST00000497057.1_1_1:201435546-201435651:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.2920227050781	2	491.231507	980.448462	1.8669	0.00091708	-1.86	-0.0009137	0.0068787	3.3791E-06	491.2304151093341	100.06	0.46532	100.06	99.856	100.32	0					15	10	2	0	0	0	0.027462	1	11078	11078		42.396	0	1	243300	+		52898	26769	43731	43768	57570	57570					-0.04254479179007831
SEVVDVAKL	9	Unmodified	_SEVVDVAKL_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MSMS	OvCa99_classI_Rep5	1	480.2752990722656	2	480.274032	958.533512	NaN	NaN	NaN	NaN	NaN	NaN	NaN	86.882	1	86.882	86.382	87.382	0								0	0	0	0.024829	1	9179	9179		93.143	5.4468	1				52899	5231	43732	43769	57571	57571					0.05258634349092972
SEVYQQAKL	9	Unmodified	_SEVYQQAKL_					0	0	0		nc|ENSG00000120868|O14727-3|APAF1;nc|ENSG00000120868|O14727-4|APAF1;nc|ENSG00000120868|O14727-2|APAF1;ENSG00000120868|ENST00000551964|APAF1	nc|ENSG00000120868|O14727-3|APAF1	nc|ENSG00000120868|O14727-3|APAF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.2828369140625	2	533.282389	1064.55022	-1.5534	-0.00082842	1.0585	0.00056448	-0.49494	-0.00026394	533.2829160216671	93.607	1.4085	91.1	90.813	92.221	-2.5072					69	29	3	0	0	0	0.12515	1	8155	8155		90.37	8.0648	1	930040			52900	3457	43733	43770	57572	57572					0.020531352350417365
SEWNEREMWK	10	Unmodified	_SEWNEREMWK_					0	0	0			REV__tr|A0A553SLX0|A0A553SLX0_NIACICBSdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21480PE=4SV=1	REV__tr|A0A553SLX0|A0A553SLX0_NIACICBSdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21480PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.7722473144531	3	465.543438	1393.60848	0.43693	0.00020341	-1.2834	-0.00059748	-0.84646	-0.00039406	465.5428458238906	38.008	0.89338	35.115	34.841	35.734	-2.8925					27	17	2	0	0	0	0.027033	1	1449	1449		20.837	0	1	47935	+		52901	30274	43734	43771	57573	57573					-0.07257551182010502
SEWPIDRNY	9	Unmodified	_SEWPIDRNY_					0	0	0			REV__tr|A0A553SFA9|A0A553SFA9_NIACIL-arabinoseisomeraseOS=NialliacirculansOX=1397GN=araAPE=3SV=1	REV__tr|A0A553SFA9|A0A553SFA9_NIACIL-arabinoseisomeraseOS=NialliacirculansOX=1397GN=araAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	590.7688598632812	2	590.275095	1178.53564	-6.4648	-0.003816	-4.355	-0.0025706	-10.82	-0.0063866	590.272448811586	160.41	2.659	158.8	158.24	160.9	-1.6101					174	63	4	0	0	0	0.65476	1	16022	16022		25.45	4.5032	1	264810	+		52902	29557	43735	43772	57574	57574					-0.046489369130767955
SEYALKVIF	9	Unmodified	_SEYALKVIF_					0	0	0			REV__ENSG00000163874|ENST00000373087|ZC3H12A	REV__ENSG00000163874|ENST00000373087|ZC3H12A	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.3484497070312	2	535.30005	1068.58555	1.3191	0.00070612	-3.9976	-0.0021399	-2.6785	-0.0014338	535.2978544007083	132.97	1.2118	132.97	132.56	133.77	0					47	25	3	0	0	0	0.027462	1	15424	15424		37.159	0	1	110040	+		52903	20905	43736	43773	57575	57575					0.05399797762856906
SEYKASGVTV	10	Unmodified	_SEYKASGVTV_					0	0	0			REV__ENSG00000243244|ENST00000404752|STON1	REV__ENSG00000243244|ENST00000404752|STON1	MULTI-MSMS	OvCa9_classI_Rep3	3	520.7670288085938	2	520.766571	1039.51859	-0.63486	-0.00033061	0.077139	4.0171E-05	-0.55772	-0.00029044	520.766555060983	76.275	3.5537	73.903	73.518	77.072	-2.3715					215	69	5	0	0	0	0.24425	1	3906	3906		87.696	10.85	1	4347000	+		52904	16857	43737	43774	57576	57576					0.0004114248110909102
SEYKASGVTV	10	Unmodified	_SEYKASGVTV_					0	0	0			REV__ENSG00000243244|ENST00000404752|STON1	REV__ENSG00000243244|ENST00000404752|STON1	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.7681884765625	2	520.766571	1039.51859	-0.65675	-0.00034201	0.056265	2.9301E-05	-0.60049	-0.00031271	520.7665431506473	77.263	2.5418	74.447	74.096	76.638	-2.8165					142	52	5	0	0	0	0.43433	3	6236	6154;6200;6236		63.534	5.0983	1	4845700	+		52905	16857	43737	43774	57577;57578;57579	57579					0.0004114248110909102
SEYLRYEDTL	10	Unmodified	_SEYLRYEDTL_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;TXNIP|p.E165Rfs*11|1|0.2|ENSG00000265972|chr1:145995010-145995011|-/T|frameshift_variant	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	OvCa9_classI_Rep4_	4	644.8077392578125	2	644.806425	1287.5983	-0.39653	-0.00025569	0.12364	7.9723E-05	-0.2729	-0.00017596	644.8064190547839	93.046	1.8091	90.538	90.262	92.071	-2.5072					86	37	5	0	0	0	0.023817	3	8092	8092;8102;8115		143.37	72.557	1	785730			52906	9525	43738	43775	57580;57581;57582	57580					-0.033998356355596115
SEYLRYEDTL	10	Unmodified	_SEYLRYEDTL_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;TXNIP|p.E165Rfs*11|1|0.2|ENSG00000265972|chr1:145995010-145995011|-/T|frameshift_variant	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	644.806425	1287.5983	-0.13524	-8.7203E-05	0.020662	1.3323E-05	-0.11458	-7.388E-05	644.8063386530147	91.821	1.7165	90.586	90.219	91.936	-1.2355	0.0021103	-0.00011443	NaN	143.37	95	32	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	410740			52907	9525	43738	43775							-0.033998356355596115
SEYLRYEDTL	10	Unmodified	_SEYLRYEDTL_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;TXNIP|p.E165Rfs*11|1|0.2|ENSG00000265972|chr1:145995010-145995011|-/T|frameshift_variant	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MATCH	OvCa9_classI_Rep3	3		2	644.806425	1287.5983	-1.504	-0.00096977	0.39721	0.00025612	-1.1068	-0.00071365	644.8066005036826	92.589	1.7096	90.627	90.378	92.087	-1.9617	0.043201	0.00037117	NaN	143.37	93	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	888620			52908	9525	43738	43775							-0.033998356355596115
SFAHSEGLAHS	11	Unmodified	_SFAHSEGLAHS_					0	0	0			REV__ENSG00000184083|ENST00000375180|FAM120C	REV__ENSG00000184083|ENST00000375180|FAM120C	MULTI-SECPEP	OvCa9_classI_Rep4_	4	571.8074340820312	2	571.764894	1141.51524	-0.0060618	-3.4659E-06	-2.1587	-0.0012343	-2.1648	-0.0012377	572.2644972859342	90.557	0.25689	87.982	87.853	88.11	-2.575					6	4	2	0	0	0	0.025806	1	7800	7800		31.53	7.3271	1	11792	+		52909	22403	43739	43776	57583	57583					-0.04986107572904075
SFALIATFLLM	11	Unmodified	_SFALIATFLLM_					0	0	0			REV__nc|ENSG00000166863|Q9UHF0-3|TAC3	REV__nc|ENSG00000166863|Q9UHF0-3|TAC3	MULTI-SECPEP	OvCa9_classI_Rep3	3	614.7847290039062	2	613.84631	1225.67807	1.1241	0.00069	1.9396	0.0011906	3.0636	0.0018806	613.8473336421067	98.696	0.82677	97.011	96.697	97.524	-1.685					32	15	3	0	0	0	0.025611	1	6655	6655		35.618	0	1	61074	+		52910	21228	43740	43777	57584	57584					0.07425559504713419
SFALKELFHAI	11	Unmodified	_SFALKELFHAI_					0	0	0			REV__ENSG00000165688|ENST00000371717|PMPCA	REV__ENSG00000165688|ENST00000371717|PMPCA	MULTI-SECPEP	OvCa9_classI_Rep3	3	425.5630798339844	3	425.908046	1274.70231	1.0037	0.00042748	3.1728	0.0013513	4.1765	0.0017788	425.9085553586733	70.962	0.60431	68.242	68.06	68.665	-2.7196					19	11	3	0	0	0	0.026101	1	3253	3253		33.039	18.953	1	8944.5	+		52911	21108	43741	43778	57585	57585					0.07594535982639172
SFALKELFHAI	11	Unmodified	_SFALKELFHAI_					0	0	0			REV__ENSG00000165688|ENST00000371717|PMPCA	REV__ENSG00000165688|ENST00000371717|PMPCA	MULTI-MATCH	OvCa9_classI_Rep2	2		3	425.908046	1274.70231	0.17051	7.2621E-05	5.1452	0.0021914	5.3157	0.002264	425.91041510914965	70.645	0.35428	68.074	67.916	68.27	-2.5707	-0.084161	0.00063325	NaN	38.714	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8734	+		52912	21108	43741	43778							0.07594535982639172
SFALNDGVPDV	11	Unmodified	_SFALNDGVPDV_					0	0	0		nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	MULTI-SECPEP	OvCa9_classI_Rep3	3	566.2979736328125	2	567.277303	1132.54005	-0.97222	-0.00055152	3.8665	0.0021934	2.8943	0.0016419	567.2778455960021	100.87	0.44661	99.26	98.898	99.344	-1.6053					11	8	2	0	0	0	0.025528	1	6851	6851		28.081	2.6313	1	11698			52913	15218	43742	43779	57586	57586					-0.020914724902013404
SFANCCEAGG	10	Unmodified	_SFANCCEAGG_					0	0	0		MTNR1B|p.Y92Sfs*13|1|0.03|ENSG00000134640|chr11:92981497-92981498|-/C|frameshift_variant;ENSG00000134640|ENST00000257068|MTNR1B	MTNR1B|p.Y92Sfs*13|1|0.03|ENSG00000134640|chr11:92981497-92981498|-/C|frameshift_variant	MTNR1B|p.Y92Sfs*13|1|0.03|ENSG00000134640|chr11:92981497-92981498|-/C|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.2467346191406	2	479.673302	957.332052	0.25069	0.00012025	3.6398	0.0017459	3.8905	0.0018662	479.6749396160352	20.935	0.23787	20.935	20.823	21.061	0					6	4	2	0	0	0	0.027145	1	67	67		24.519	6.1948	1	9717.8			52914	4314	43743	43780	57587	57587					-0.14832120950575245
SFARHSIYV	9	Unmodified	_SFARHSIYV_					0	0	0			REV__ENSG00000174482|ENST00000698399|LINGO2;REV__nc|ENSG00000169783|Q96FE5-2|LINGO1	REV__ENSG00000174482|ENST00000698399|LINGO2	MULTI-MSMS	OvCa9_classI_Rep3	3	540.2850952148438	2	540.285266	1078.55598	-0.32528	-0.00017574	-1.6149	-0.00087249	-1.9402	-0.0010482	540.284316762095	91.583	1.0289	89.559	89.332	90.361	-2.0241					50	20	3	0	0	0	0.33652	1	5753	5753		58.782	0.55203	1	1170800	+		52915	21835;21483	43744	43781	57588	57588					0.019842785373839433
SFAVAFAVMAI	11	Unmodified	_SFAVAFAVMAI_					0	0	0			REV__ENSG00000091138|ENST00000340010|SLC26A3	REV__ENSG00000091138|ENST00000340010|SLC26A3	MULTI-MSMS	OvCa99_classI_Rep5	1	563.8015747070312	2	563.801903	1125.58925	0.11618	6.5502E-05	-0.93403	-0.00052661	-0.81785	-0.00046111	563.8013275176204	33.409	0.54022	33.409	33.236	33.776	0					15	10	2	0	0	0	0.70518	1	1538	1538		27.882	1.0861	1	171670	+		52916	17244	43745	43782	57589	57589					0.03148144265060182
SFAVAFAVMAI	11	Unmodified	_SFAVAFAVMAI_					0	0	0			REV__ENSG00000091138|ENST00000340010|SLC26A3	REV__ENSG00000091138|ENST00000340010|SLC26A3	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	563.801903	1125.58925	0.11618	6.5502E-05	-0.93403	-0.00052661	-0.81785	-0.00046111	563.8013275176204	33.409	0.54022	33.409	33.236	33.776	0	0	0	NaN	27.882	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171670	+		52917	17244	43745	43782							0.03148144265060182
SFCQKGTKKI	10	Unmodified	_SFCQKGTKKI_					0	0	0			REV__ENST00000463842.1_1_X:133979267-133988244:+|nuORF	REV__ENST00000463842.1_1_X:133979267-133988244:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	570.3131103515625	2	570.315709	1138.61686	-1.1735	-0.00066925	-1.9761	-0.001127	-3.1495	-0.0017962	570.3143754994007	119.79	1.3582	118.44	118.14	119.5	-1.3444					67	25	4	0	0	0	0.47142	1	11298	11298		58.23	10.27	1	393950	+		52918	20481	43746	43783	57590	57590					0.05310047525313166
SFCRRWLMKWK	11	Unmodified	_SFCRRWLMKWK_					0	0	0			REV__ENST00000427130.6_1_8:59535830-59536311:-|nuORF	REV__ENST00000427130.6_1_8:59535830-59536311:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	514.7681274414062	3	514.272448	1539.79551	3.6576	0.001881	4.4663	0.0022969	8.1239	0.0041779	514.6089238149478	25.437	0.23792	22.727	22.629	22.867	-2.7097					5	4	2	0	0	0	0.026416	1	240	240		16.53	2.4438	1	6655.6	+		52919	25674	43747	43784	57591	57591					0.047208138925043386
SFDGQKLEFL	10	Unmodified	_SFDGQKLEFL_					0	0	0			REV__tr|A0A7D6ZJQ2|A0A7D6ZJQ2_9CLOTBiotincarboxylcarrierproteinofacetyl-CoAcarboxylaseOS=ClostridiumintestinaleOX=36845GN=accBPE=4SV=1	REV__tr|A0A7D6ZJQ2|A0A7D6ZJQ2_9CLOTBiotincarboxylcarrierproteinofacetyl-CoAcarboxylaseOS=ClostridiumintestinaleOX=36845GN=accBPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	592.3019409179688	2	592.303321	1182.59209	-0.39133	-0.00023179	-3.4835	-0.0020633	-3.8748	-0.0022951	592.3012802476371	82.184	2.4178	79.501	79.156	81.574	-2.683					96	49	4	0	0	0	0.59317	1	6831	6831		42.864	3.6114	1	1637000	+		52920	32088	43748	43785	57592	57592					0.008096909235746352
SFDKLPPTT	9	Unmodified	_SFDKLPPTT_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MULTI-MSMS	OvCa99_classI_Rep5	1	503.2681579589844	2	503.266207	1004.51786	0.4164	0.00020956	-1.0366	-0.00052167	-0.62018	-0.00031212	503.2655739332568	161.69	0.81482	161.69	161.26	162.07	0					32	15	3	0	0	0	0.61208	1	18964	18964		30.504	1.3541	1	44150	+		52921	17124	43749	43786	57593	57593					0.015783478320258837
SFDLRCINL	9	Unmodified	_SFDLRCINL_					0	0	0			REV__nc|ENSG00000038382|O75962-2|TRIO	REV__nc|ENSG00000038382|O75962-2|TRIO	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.8084716796875	2	540.778959	1079.54336	3.1859	0.0017229	-0.58729	-0.00031759	2.5986	0.0014053	540.7784286595096	102.5	0.42597	102.5	102.29	102.72	0					17	9	2	0	0	0	0.027462	1	11417	11417		35.618	7.736	1	1032800	+		52922	16618	43750	43787	57594	57594					0.006774990828034788
SFDVQAGKV	9	Unmodified	_SFDVQAGKV_					0	0	0			REV__ENST00000555139.1_1_14:74961475-74961700:+|nuORF	REV__ENST00000555139.1_1_14:74961475-74961700:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.78118896484375	2	475.750724	949.486896	0.81539	0.00038792	-1.7103	-0.00081368	-0.89492	-0.00042576	475.7498544716923	115.31	0.65068	113.91	113.57	114.22	-1.3977					27	12	3	0	0	0	0.027462	1	10764	10764		19.997	1.6724	1	29561	+		52923	21134	43751	43788	57595	57595					0.010131945178159185
SFEAIKVKA	9	Unmodified	_SFEAIKVKA_					0	0	0			REV__nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	REV__nc|ENSG00000130640|Q9BSJ2-4|TUBGCP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.2321472167969	2	496.792392	991.570232	-0.55642	-0.00027642	2.9524	0.0014667	2.396	0.0011903	496.7937089671309	42.544	0.81454	42.544	42.199	43.014	0					30	18	2	0	0	0	0.027462	1	2743	2743		15.642	0	1	94607	+		52924	18955	43752	43789	57596	57596					0.07410930965670559
SFELLVKR	8	Unmodified	_SFELLVKR_					0	0	0		nc|ENSG00000087470|O00429-4|DNM1L;nc|ENSG00000087470|O00429-5|DNM1L;nc|ENSG00000087470|O00429-3|DNM1L;nc|ENSG00000087470|O00429-9|DNM1L;nc|ENSG00000087470|O00429-2|DNM1L;ENSG00000087470|ENST00000549701|DNM1L;nc|ENSG00000087470|O00429-8|DNM1L;nc|ENSG00000087470|O00429-6|DNM1L;nc|ENSG00000087470|O00429-7|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	nc|ENSG00000087470|O00429-4|DNM1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.788818359375	2	496.300384	990.586216	-0.042448	-2.1067E-05	-0.0010442	-5.1825E-07	-0.043492	-2.1585E-05	496.3000566900743	71.741	0.65146	71.741	71.349	72	0					26	15	3	0	0	0	0.028476	1	6972	6972		18.324	0	1	740450			52925	1775	43753	43790	57597	57597					0.09054637202564209
SFETILPHL	9	Unmodified	_SFETILPHL_					0	0	0		tr|A0A553SFW7|A0A553SFW7_NIACIPucRC-terminalhelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09660PE=4SV=1	tr|A0A553SFW7|A0A553SFW7_NIACIPucRC-terminalhelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09660PE=4SV=1	tr|A0A553SFW7|A0A553SFW7_NIACIPucRC-terminalhelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09660PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.7898559570312	2	528.78985	1055.56515	-1.4054	-0.00074315	1.3923	0.00073623	-0.013097	-6.9254E-06	528.7903060219585	124.07	1.2205	122.68	122.37	123.59	-1.3908					47	23	3	0	0	0	0.1595	1	11768	11768		83.287	0	1	137940			52926	33085	43754	43791	57598	57598					0.03958627103043
SFFETLNTGL	10	Unmodified	_SFFETLNTGL_					0	0	0			REV__tr|A0A7D6VYN2|A0A7D6VYN2_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15470PE=4SV=1	REV__tr|A0A7D6VYN2|A0A7D6VYN2_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15470PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.7838134765625	2	564.782222	1127.54989	-0.64596	-0.00036483	-3.7069	-0.0020936	-4.3528	-0.0024584	564.7797669424268	27.766	0.19993	27.766	27.641	27.841	0					6	3	2	0	0	0	0.027028	1	857	857		24.519	0	1	39302	+		52927	31823	43755	43792	57599	57599					-0.008782844847928573
SFFLFVYF	8	Unmodified	_SFFLFVYF_					0	0	0			REV__ENST00000373075.6_1_1:37959208-37959391:-|nuORF	REV__ENST00000373075.6_1_1:37959208-37959391:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.260986328125	2	535.273304	1068.53206	-0.44948	-0.0002406	1.4978	0.00080173	1.0483	0.00056114	535.2743248562074	35.269	0.14151	35.269	35.198	35.339	0					4	2	2	0	0	0	0.028476	1	1758	1758		21.702	0	1	18946	+		52928	25025	43756	43793	57600	57600					0.0005304505100411916
SFFLIWKLKY	10	Unmodified	_SFFLIWKLKY_					0	0	0			REV__tr|A0A553ST22|A0A553ST22_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_04220PE=4SV=1	REV__tr|A0A553ST22|A0A553ST22_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_04220PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	449.7539367675781	3	448.92867	1343.76418	-0.59227	-0.00026589	3.488	0.0015659	2.8957	0.0013	449.2644524122239	45.264	0.31075	42.225	42.075	42.386	-3.0385					8	5	2	0	0	0	0.027214	1	2301	2301		16.007	0	1	20921	+		52929	30906	43757	43794	57601	57601					0.10604887401746055
SFFLNMSVL	9	Unmodified	_SFFLNMSVL_					0	0	0			REV__L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|238|2|anti-sense	REV__L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|238|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.8311157226562	2	529.272978	1056.5314	-0.11534	-6.1044E-05	-4.4649	-0.0023631	-4.5802	-0.0024242	529.2716801035468	82.583	0.36518	80.984	80.75	81.115	-1.5988					10	6	2	0	0	0	0.02744	1	7055	7055		62.107	26.489	1	9514.5	+		52930	28569	43758	43795	57602	57602					0.005398823396262742
SFFLNMSVL	9	Unmodified	_SFFLNMSVL_					0	0	0			REV__L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|238|2|anti-sense	REV__L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|238|2|anti-sense	MULTI-MATCH	OvCa9_classI_Rep3	3		2	529.272978	1056.5314	-1.1597	-0.00061382	-4.885	-0.0025855	-6.0448	-0.0031993	529.2712970040488	83.146	0.54654	80.849	80.629	81.176	-2.2963	-0.067372	-0.00020964	NaN	62.107	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20503	+		52931	28569	43758	43795							0.005398823396262742
SFFNNIHLI	9	Unmodified	_SFFNNIHLI_					0	0	0		tr|A0A553SPR8|A0A553SPR8_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_26915PE=3SV=1	tr|A0A553SPR8|A0A553SPR8_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_26915PE=3SV=1	tr|A0A553SPR8|A0A553SPR8_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_26915PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.26123046875	2	552.795466	1103.57638	-1.2937	-0.00071516	-2.5888	-0.0014311	-3.8825	-0.0021462	553.2957768127284	63.963	0.8796	63.963	63.414	64.294	0					32	21	3	0	0	0	0.027462	1	5716	5716		24.203	17.89	1	568220			52932	34075	43759	43796	57603	57603					0.028734491971817988
SFFNNIHLI	9	Unmodified	_SFFNNIHLI_					0	0	0		tr|A0A553SPR8|A0A553SPR8_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_26915PE=3SV=1	tr|A0A553SPR8|A0A553SPR8_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_26915PE=3SV=1	tr|A0A553SPR8|A0A553SPR8_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_26915PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	552.795466	1103.57638	0.57986	0.00032054	-6.1039	-0.0033742	-5.5241	-0.0030537	552.7933808665061	66.528	0.20087	63.582	63.419	63.62	-2.9459	-0.19025	-0.0033294	NaN	30.504	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9715.1			52933	34075	43759	43796							0.028734491971817988
SFGDLHVLKN	10	Unmodified	_SFGDLHVLKN_					0	0	0		tr|A0A553SSX0|A0A553SSX0_NIACIAminoacidABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_03755PE=4SV=1	tr|A0A553SSX0|A0A553SSX0_NIACIAminoacidABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_03755PE=4SV=1	tr|A0A553SSX0|A0A553SSX0_NIACIAminoacidABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_03755PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.8888549804688	2	565.303655	1128.59276	2.1182	0.0011974	1.7912	0.0010125	3.9094	0.00221	565.3059401977002	120.12	0.26707	120.12	119.92	120.18	0					12	5	3	0	0	0	0.026782	1	13789	13789		30.318	0	1	129010			52934	34429	43760	43797	57604	57604					0.03360530363283942
SFGDTSHD	8	Unmodified	_SFGDTSHD_					0	0	0			REV__ENST00000440172.5_1_7:138603757-138603877:-|nuORF	REV__ENST00000440172.5_1_7:138603757-138603877:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1719055175781	2	433.169764	864.324976	2.6506	0.0011482	1.0551	0.00045706	3.7058	0.0016052	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.7549	1	1446	1446		24.203	0	1	60065	+		52935	25831	43761	43798	57605	57605					-0.11261394235123134
SFGENVIFV	9	Unmodified	_SFGENVIFV_					0	0	0		ENST00000279249.2_1_11:65088049-65088166:+|nuORF	ENST00000279249.2_1_11:65088049-65088166:+|nuORF	ENST00000279249.2_1_11:65088049-65088166:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	506.2601013183594	2	506.260925	1010.5073	-0.50726	-0.0002568	-3.6075	-0.0018263	-4.1147	-0.0020831	506.2592188272637	80.284	3.2748	77.944	77.563	80.838	-2.3399					161	64	6	0	0	0	0.35444	1	4391	4391		56.721	0.28726	1	3690200			52936	10037	43762	43799	57606	57606					0.002463651776338338
SFGRLSYIHVT	11	Unmodified	_SFGRLSYIHVT_					0	0	0		nc|ENSG844|Q9WJR5|ERVK-19_pol	nc|ENSG844|Q9WJR5|ERVK-19_pol	nc|ENSG844|Q9WJR5|ERVK-19_pol	MULTI-SECPEP	OvCa99_classI_Rep5	1	640.3590087890625	2	640.343312	1278.67207	-0.030748	-1.9689E-05	-3.2297	-0.0020681	-3.2604	-0.0020878	640.3410381372037	47.628	0.8251	47.628	47.379	48.204	0					41	18	4	0	0	0	0.025457	1	3432	3432		29.17	0	1	1141500			52937	15411	43763	43800	57607	57607					0.04388177317377995
SFGVPRKAI	9	Unmodified	_SFGVPRKAI_					0	0	0		ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	MULTI-MSMS	OvCa9_classI_Rep2	2	487.79132080078125	2	487.792727	973.5709	-3.7436	-0.0018261	-1.6917	-0.00082522	-5.4353	-0.0026513	487.7923104260754	154.39	0.71609	154.16	153.81	154.53	-0.22696					19	14	2	0	0	0	0.67509	1	15721	15721		23.042	3.6825	1	34347			52938	1894	43764	43801	57608	57608					0.08305770405377189
SFGWRIHF	8	Unmodified	_SFGWRIHF_					0	0	0			REV__ENST00000472190.5_1_1:233765551-233807273:+|nuORF	REV__ENST00000472190.5_1_1:233765551-233807273:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.2924194335938	2	525.269419	1048.52428	-0.74056	-0.00038899	-2.8449	-0.0014944	-3.5855	-0.0018834	525.2676048944421	21.025	0.90847	19.686	19.311	20.22	-1.3386					29	18	2	0	0	0	0.028476	1	142	142		14.664	6.9738	1	16161	+		52939	19319	43765	43802	57609	57609					0.0019633057406736043
SFHKCIQAV	9	Unmodified	_SFHKCIQAV_					0	0	0			REV__nc|ENSG00000106290|P49848-4|TAF6	REV__nc|ENSG00000106290|P49848-4|TAF6	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.287841796875	2	516.768394	1031.52224	-0.98796	-0.00051054	-3.0199	-0.0015606	-4.0079	-0.0020712	516.7665389000051	39.92	0.26218	39.92	39.798	40.06	0					8	5	2	0	0	0	0.027462	1	2375	2375		18.324	0	1	102790	+		52940	17789	43766	43803	57610	57610					0.007735337739632087
SFHNIHNTF	9	Unmodified	_SFHNIHNTF_					0	0	0		ENST00000481952.1_1_10:124921781-124922345:+|nuORF;nc|ENSG00000154473|O43684-2|BUB3;ENSG00000154473|ENST00000368865|BUB3	ENST00000481952.1_1_10:124921781-124922345:+|nuORF	ENST00000481952.1_1_10:124921781-124922345:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	558.7662963867188	2	558.764697	1115.51484	-0.026428	-1.4767E-05	-0.34767	-0.00019426	-0.3741	-0.00020903	558.7644202239891	55.294	1.3949	55.294	55.064	56.459	0					70	33	4	0	0	0	0.020196	1	4505	4505		146.79	64.035	1	6764100			52941	5739	43767	43804	57611	57611					-0.038294825021012
SFHYLIMAKG	10	Unmodified	_SFHYLIMAKG_					0	0	0		ENSG00000126838|ENST00000261336|PZP;nc|ENSG00000126838|P20742-2|PZP;PZP|p.P734Lfs*15|1|0.03|ENSG00000126838|chr12:9166079-9166110|GTCTCAGGAAAATAGCTTCGCACCGTTTCAGG/-|frameshift_variant	ENSG00000126838|ENST00000261336|PZP	ENSG00000126838|ENST00000261336|PZP	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.2974853515625	2	583.804977	1165.5954	1.4405	0.000841	-3.4572	-0.0020183	-2.0166	-0.0011773	584.3042031244634	135.12	0.5466	135.12	134.81	135.36	0					16	11	2	0	0	0	0.026752	1	15762	15762		35.618	6.4687	1	319670			52942	3805	43768	43805	57612	57612					0.019226624965540395
SFIIIFLFLL	10	Unmodified	_SFIIIFLFLL_					0	0	0			REV__ERC1-CACNA1C|23|fusion;REV__CACNA1D|p.Q1955Pfs*19|1|0.09|ENSG00000157388|chr3:53808762-53808763|-/CTCCTCCTTCAGAGAGTGTTGTGCAG|frameshift_variant;REV__nc|ENSG00000102001|O60840-5|CACNA1F	REV__ERC1-CACNA1C|23|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	410.2381286621094	3	409.258016	1224.75222	0.69033	0.00028252	-0.43761	-0.0001791	0.25272	0.00010343	409.2577842775704	35.981	0.45844	35.981	35.799	36.257	0					19	9	3	0	0	0	0.027298	1	1867	1867		11.636	0	1	55646	+		52943	28114;15727;17532	43769	43806	57613	57613					0.14883270658538095
SFIKKLNTIS	10	Unmodified	_SFIKKLNTIS_					0	0	0			REV__ENST00000538204.5_1_X:131506923-131507088:-|nuORF	REV__ENST00000538204.5_1_X:131506923-131507088:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8418579101562	2	575.845156	1149.67576	-2.1491	-0.0012375	-1.4619	-0.00084184	-3.611	-0.0020794	575.8441928035448	141.47	4.0925	141.24	139.21	143.3	-0.22696					166	82	3	0	0	0	0.78463	1	14376	14376		20.947	4.4738	1	100260	+		52944	27321	43770	43807	57614	57614					0.10690847091291289
SFILFVFPSV	10	Unmodified	_SFILFVFPSV_					0	0	0		ENST00000491240.5_1_X:48433911-48434199:+|nuORF;ENST00000488216.5_1_X:48433568-48434199:+|nuORF	ENST00000491240.5_1_X:48433911-48434199:+|nuORF	ENST00000491240.5_1_X:48433911-48434199:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	578.290283203125	2	578.326068	1154.63758	-7.0181	-0.0040587	3.7999	0.0021976	-3.2182	-0.0018612	578.3290178965883	160.37	0.16161	158.76	158.67	158.83	-1.6101					6	3	2	0	0	0	0.027716	1	15845	15845		84.916	0	1	5794.7			52945	12664	43771	43808	57615	57615					0.0664496117658473
SFIRRYLT	8	Unmodified	_SFIRRYLT_					0	0	0		tr|A0A7D6VU01|A0A7D6VU01_9CLOTSpoVRfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05030PE=4SV=1	tr|A0A7D6VU01|A0A7D6VU01_9CLOTSpoVRfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05030PE=4SV=1	tr|A0A7D6VU01|A0A7D6VU01_9CLOTSpoVRfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05030PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.8603515625	2	528.303458	1054.59236	2.3452	0.001239	-2.8581	-0.0015099	-0.51288	-0.00027096	528.3018964513425	94.721	0.43166	94.721	94.517	94.949	0					12	9	2	0	0	0	0.028476	1	10295	10295		38.806	6.8513	1	273040			52946	35156	43772	43809	57616	57616					0.06725155434082808
SFISRSCDC	9	Unmodified	_SFISRSCDC_					0	0	0		chr13:43059012-43068930|141|10.11|0.21|5.56|+|1|TE_info:L1PB1,L1PB1_dup10508,L1,LINE,donor,-,43056899,43059012|None,DNAJC15|11;chr13:43058862-43068930|92|13.04|0.21|5.97|+|1|TE_info:L1PB1,L1PB1_dup10508,L1,LINE,donor,-,43056899,43058862|None,DNAJC15|11	chr13:43059012-43068930|141|10.11|0.21|5.56|+|1|TE_info:L1PB1,L1PB1_dup10508,L1,LINE,donor,-,43056899,43059012|None,DNAJC15|11	chr13:43059012-43068930|141|10.11|0.21|5.56|+|1|TE_info:L1PB1,L1PB1_dup10508,L1,LINE,donor,-,43056899,43059012|None,DNAJC15|11	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.8155822753906	2	509.210052	1016.40555	-0.69164	-0.00035219	-3.7549	-0.001912	-4.4465	-0.0022642	509.71148310357626	75.01	0.23936	72.6	72.439	72.679	-2.4106					6	4	2	0	0	0	0.027462	1	3755	3755		29.15	3.6994	1	6387.9			52947	336	43773	43810	57617	57617					-0.10199572508099664
SFITRHRRTRR	11	Unmodified	_SFITRHRRTRR_					0	0	0			REV__ENSG00000063515|ENST00000086933|GSC2	REV__ENSG00000063515|ENST00000086933|GSC2	MULTI-MSMS	OvCa9_classI_Rep2	2	495.9581298828125	3	495.958908	1484.85489	-4.8163	-0.0023887	4.3088	0.002137	-0.50748	-0.00025169	495.96094978154576	162.14	1.4092	161.91	160.94	162.35	-0.22696					77	27	3	0	0	0	0.72511	1	16533	16533		14.086	4.4399	1	83644	+		52948	16762	43774	43811	57618	57618					0.1318616922255842
SFKEKVRARG	10	Unmodified	_SFKEKVRARG_					0	0	0			REV__nc|ENSG00000119523|Q9H553-2|ALG2	REV__nc|ENSG00000119523|Q9H553-2|ALG2	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3397827148438	2	589.343646	1176.67274	-0.99558	-0.00058674	-0.19072	-0.0001124	-1.1863	-0.00069914	589.3433618627441	145.15	3.8411	143.72	141.74	145.58	-1.4357					179	73	4	0	0	0	0.74374	1	14208	14208		25.574	0	1	92509	+		52949	18447	43775	43812	57619	57619					0.09147016757128767
SFKFWRAPSR	10	Unmodified	_SFKFWRAPSR_					0	0	0		nc|ENSG00000176225|Q86VV8-3|RTTN;ENSG00000176225|ENST00000640769|RTTN;ENST00000583043.5_1_18:67684852-67806940:-|nuORF	nc|ENSG00000176225|Q86VV8-3|RTTN	nc|ENSG00000176225|Q86VV8-3|RTTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	427.5560302734375	3	427.899885	1280.67783	0.44365	0.00018984	2.3018	0.00098493	2.7454	0.0011748	428.23547938826823	45.453	1.1815	45.453	44.573	45.754	0					39	26	2	0	0	0	0.027138	1	3031	3031		12.957	0	1	112990			52950	7592	43776	43813	57620	57620					0.048713206197362524
SFKGIAFNSLL	11	Unmodified	_SFKGIAFNSLL_					0	0	0		ENSG00000160539|ENST00000372264|PLPP7	ENSG00000160539|ENST00000372264|PLPP7	ENSG00000160539|ENST00000372264|PLPP7	MULTI-SECPEP	OvCa9_classI_Rep2	2	598.3424072265625	2	598.837331	1195.66011	-1.5838	-0.00094846	-0.75091	-0.00044967	-2.3348	-0.0013981	599.3390414747316	84.397	0.72569	82.85	82.378	83.104	-1.5462					16	13	2	0	0	0	0.025767	1	7285	7285		37.508	3.5865	1	30430			52951	6070	43777	43814	57621	57621					0.07010560574212832
SFKLIKLPI	9	Unmodified	_SFKLIKLPI_					0	0	0			REV__SORCS2|p.R839Lfs*24|1|0.03|ENSG00000184985|chr4:7723787-7723788|-/T|frameshift_variant	REV__SORCS2|p.R839Lfs*24|1|0.03|ENSG00000184985|chr4:7723787-7723788|-/T|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7972412109375	2	529.852253	1057.68995	3.125	0.0016558	1.9553	0.001036	5.0804	0.0026918	529.8531249505108	97.746	0.51585	97.746	97.479	97.995	0					18	11	2	0	0	0	0.027462	1	10721	10721		27.882	4.8398	1	234770	+		52952	22465	43778	43815	57622	57622					0.16341544310216705
SFKLIKLPI	9	Unmodified	_SFKLIKLPI_					0	0	0			REV__SORCS2|p.R839Lfs*24|1|0.03|ENSG00000184985|chr4:7723787-7723788|-/T|frameshift_variant	REV__SORCS2|p.R839Lfs*24|1|0.03|ENSG00000184985|chr4:7723787-7723788|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.3102416992188	2	529.852253	1057.68995	-2.0029	-0.0010613	-4.0685	-0.0021557	-6.0715	-0.003217	530.3496610618375	100.38	1.0704	98.114	97.676	98.746	-2.2665					56	20	4	0	0	0	0.027462	1	9046	9046		17.365	10.629	1	115010	+		52953	22465	43778	43815	57623	57623					0.16341544310216705
SFKLIKLPI	9	Unmodified	_SFKLIKLPI_					0	0	0			REV__SORCS2|p.R839Lfs*24|1|0.03|ENSG00000184985|chr4:7723787-7723788|-/T|frameshift_variant	REV__SORCS2|p.R839Lfs*24|1|0.03|ENSG00000184985|chr4:7723787-7723788|-/T|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	529.852253	1057.68995	-1.1397	-0.00060389	1.446	0.00076617	0.30627	0.00016228	529.8524223521149	98.69	1.244	97.797	97.41	98.654	-0.89305	-0.14022	0.0011307	NaN	27.882	45	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80303	+		52954	22465	43778	43815							0.16341544310216705
SFKLIKLPI	9	Unmodified	_SFKLIKLPI_					0	0	0			REV__SORCS2|p.R839Lfs*24|1|0.03|ENSG00000184985|chr4:7723787-7723788|-/T|frameshift_variant	REV__SORCS2|p.R839Lfs*24|1|0.03|ENSG00000184985|chr4:7723787-7723788|-/T|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	529.852253	1057.68995	-0.46875	-0.00024837	-5.0588	-0.0026804	-5.5275	-0.0029288	529.8519455753918	99.776	0.75859	98.091	97.727	98.485	-1.685	0.15422	-0.0057625	NaN	27.882	41	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92249	+		52955	22465	43778	43815							0.16341544310216705
SFKPVCYLL	9	Unmodified	_SFKPVCYLL_					0	0	0			REV__nc|ENSG00000139132|Q96M96-2|FGD4	REV__nc|ENSG00000139132|Q96M96-2|FGD4	MULTI-SECPEP	OvCa9_classI_Rep3	3	534.7772216796875	2	535.291171	1068.56779	0.40189	0.00021513	2.7745	0.0014852	3.1764	0.0017003	535.2924505253822	75.032	0.88641	72.621	72.29	73.177	-2.4106					45	17	3	0	0	0	0.027453	1	3833	3833		37.812	3.639	1	135020	+		52956	19588	43779	43816	57624	57624					0.036247592363451986
SFKQRSDLF	9	Unmodified	_SFKQRSDLF_					0	0	0		ENSG00000160908|ENST00000337673|ZNF394	ENSG00000160908|ENST00000337673|ZNF394	ENSG00000160908|ENST00000337673|ZNF394	MULTI-MSMS	OvCa99_classI_Rep5	1	564.2974853515625	2	564.29583	1126.57711	0.82897	0.00046778	-0.90815	-0.00051247	-0.079186	-4.4684E-05	564.2951693307868	63.239	0.55814	63.239	62.976	63.534	0					33	13	3	0	0	0	0.1804	1	5677	5677		79.713	18.741	1	2455700			52957	6102	43780	43817	57625	57625					0.01888243846201476
SFKVLPFL	8	Unmodified	_SFKVLPFL_					0	0	0		ENST00000379565.7_1_X:20168583-20168808:-|nuORF	ENST00000379565.7_1_X:20168583-20168808:-|nuORF	ENST00000379565.7_1_X:20168583-20168808:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	475.78668212890625	2	475.789121	949.56369	-1.1235	-0.00053453	-3.1454	-0.0014966	-4.2689	-0.0020311	475.7874263780674	139.39	1.0332	139.16	138.81	139.84	-0.22696					43	20	3	0	0	0	0.74971	1	13924	13924		26.796	0	1	86387			52958	11128	43781	43818	57626	57626					0.08689037804924737
SFLGAPRGVL	10	Unmodified	_SFLGAPRGVL_					0	0	0			REV__nc|ENSG00000140853|Q86WI3-5|NLRC5	REV__nc|ENSG00000140853|Q86WI3-5|NLRC5	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.271240234375	2	508.798009	1015.58147	-0.39373	-0.00020033	-1.01	-0.00051391	-1.4038	-0.00071424	508.7968890194717	53.084	0.73554	53.084	52.915	53.651	0					24	16	2	0	0	0	0.026982	1	4223	4223		23.042	1.0826	1	261750	+		52959	19703	43782	43819	57627	57627					0.07429753059807354
SFLGGVLLIL	10	Unmodified	_SFLGGVLLIL_					0	0	0		nc|ENSG00000211780|A0A075B6T7|TRAV6	nc|ENSG00000211780|A0A075B6T7|TRAV6	nc|ENSG00000211780|A0A075B6T7|TRAV6	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.7559204101562	2	516.328611	1030.64267	0.99308	0.00051276	1.4895	0.00076909	2.4826	0.0012818	516.3293267648569	144.46	0.48491	144.46	144.21	144.69	0					16	9	2	0	0	0	0.026871	1	16898	16898		37.159	0	1	51747			52960	15293	43783	43820	57628	57628					0.1285726503922433
SFLHFLPSLS	10	Unmodified	_SFLHFLPSLS_					0	0	0		ENST00000463608.5_1_22:21830433-21838406:-|nuORF	ENST00000463608.5_1_22:21830433-21838406:-|nuORF	ENST00000463608.5_1_22:21830433-21838406:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.7904052734375	2	574.310949	1146.60735	-0.20206	-0.00011604	-0.74103	-0.00042558	-0.94308	-0.00054162	574.3103217465459	30.806	1.4236	30.806	30.433	31.857	0					60	28	3	0	0	0	0.02661	1	1175	1175		40.778	11.608	1	140750			52961	12230	43784	43821	57629	57629					0.03990602511430552
SFLICSKLKAR	11	Unmodified	_SFLICSKLKAR_					0	0	0		nc|ENSG00000163050|Q8NI60-4|COQ8A;ENST00000485462.5_1_1:227165121-227174435:+|nuORF;nc|ENSG00000163050|Q8NI60-3|COQ8A;ENSG00000163050|ENST00000366777|COQ8A;nc|ENSG00000163050|Q8NI60-2|COQ8A;ENST00000478406.5_1_1:227171537-227174435:+|nuORF	nc|ENSG00000163050|Q8NI60-4|COQ8A	nc|ENSG00000163050|Q8NI60-4|COQ8A	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3687744140625	2	633.373558	1264.73256	-4.8823	-0.0030923	-1.8485	-0.0011708	-6.7309	-0.0042631	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.72064	1	12963	12963		22.58	0.61977	1	765700			52962	6258	43785	43822	57630	57630					0.11078571376128821
SFLIPARIV	9	Unmodified	_SFLIPARIV_					0	0	0		ENSG00000178385|ENST00000427836|PLEKHM3;nc|ENSG00000178385|Q6ZWE6-2|PLEKHM3	ENSG00000178385|ENST00000427836|PLEKHM3	ENSG00000178385|ENST00000427836|PLEKHM3	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7546081542969	2	508.318577	1014.6226	0.3157	0.00016048	2.0078	0.0010206	2.3235	0.0011811	508.8207128885666	71.922	0.33742	71.922	71.707	72.045	0					15	7	3	0	0	0	0.027462	1	6985	6985		21.96	0	1	214620			52963	7749	43786	43823	57631	57631					0.11587514099267082
SFLKFIMRKI	10	Unmodified	_SFLKFIMRKI_					0	0	0			REV__ENSG00000101474|ENST00000217456|APMAP	REV__ENSG00000101474|ENST00000217456|APMAP	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8826293945312	2	641.888844	1281.76313	-6.2551	-0.0040151	-3.5631	-0.0022871	-9.8182	-0.0063022	641.8862689798733	156.94	0.92667	155.77	155.29	156.22	-1.1707					38	17	3	0	0	0	0.79917	1	13519	13519		19.104	4.2386	1	33885	+		52964	17504	43787	43824	57632	57632					0.1335234976118045
SFLKHFLR	8	Unmodified	_SFLKHFLR_					0	0	0			REV__nc|ENSG00000147434|Q15825-2|CHRNA6	REV__nc|ENSG00000147434|Q15825-2|CHRNA6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.2793579101562	2	524.308544	1046.60253	-2.7409	-0.0014371	-3.2638	-0.0017112	-6.0048	-0.0031483	524.307218487892	49.519	0.61992	46.377	46.095	46.715	-3.1416					18	11	2	0	0	0	0.028476	1	2827	2827		30.504	8.5438	1	58684	+		52965	20064	43788	43825	57633	57633					0.08109763159313843
SFLKWKAF	8	Unmodified	_SFLKWKAF_					0	0	0		ENST00000587299.1_1_17:40672405-40673135:+|nuORF;ENST00000592831.1_1_17:40672405-40672870:+|nuORF	ENST00000587299.1_1_17:40672405-40673135:+|nuORF	ENST00000587299.1_1_17:40672405-40673135:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	513.7947998046875	2	513.792195	1025.56984	1.1497	0.00059072	4.3152	0.0022171	5.465	0.0028079	513.7943176644559	127.87	1.1843	127.65	127.29	128.48	-0.22697					49	23	3	0	0	0	0.68312	2	12522	12522;12529		46.766	1.5511	1	153960			52966	14060	43789	43826	57634;57635	57634					0.05807556036438655
SFLLLVDV	8	Unmodified	_SFLLLVDV_					0	0	0			REV__nc|ENSG00000139263|Q6UXM1-2|LRIG3	REV__nc|ENSG00000139263|Q6UXM1-2|LRIG3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.7449645996094	2	453.270761	904.52697	0.4908	0.00022247	-4.0576	-0.0018392	-3.5668	-0.0016167	453.2688058347309	58.133	1.0545	54.788	54.495	55.549	-3.3449					33	20	2	0	0	0	0.028476	1	3833	3833		24.203	0	1	88859	+		52967	28889	43790	43827	57636	57636					0.0708874118837457
SFLLVPRR	8	Unmodified	_SFLLVPRR_					0	0	0			REV__nc|ENSG00000137266|A1A5C7-4|SLC22A23	REV__nc|ENSG00000137266|A1A5C7-4|SLC22A23	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2640686035156	2	494.308544	986.602535	-0.48051	-0.00023752	-0.42535	-0.00021026	-0.90586	-0.00044778	494.308147805139	41.203	0.36143	41.203	41.014	41.375	0					11	7	2	0	0	0	0.028476	1	2538	2538		24.203	0	1	42882	+		52968	19443	43791	43828	57637	57637					0.10869763159314516
SFLMGDWGPE	10	Unmodified	_SFLMGDWGPE_					0	0	0		ENST00000444881.5_1_2:219151193-219151334:-|nuORF	ENST00000444881.5_1_2:219151193-219151334:-|nuORF	ENST00000444881.5_1_2:219151193-219151334:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	569.8350830078125	2	569.747324	1137.4801	-0.66528	-0.00037904	1.0088	0.00057479	0.34357	0.00019575	569.7471103183927	99.834	0.50267	97.508	97.263	97.766	-2.3253					16	9	2	0	0	0	0.026752	1	8895	8895		20.947	8.7401	1	25942			52969	11964	43792	43829	57638	57638					-0.08314486425069845
SFLMIVYF	8	Unmodified	_SFLMIVYF_					0	0	0			REV__tr|A0A553SQX8|A0A553SQX8_NIACIDUF1516familyproteinOS=NialliacirculansOX=1397GN=CEQ21_07480PE=4SV=1	REV__tr|A0A553SQX8|A0A553SQX8_NIACIDUF1516familyproteinOS=NialliacirculansOX=1397GN=CEQ21_07480PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.266845703125	2	510.267164	1018.51978	-1.0808	-0.00055148	0.58665	0.00029935	-0.49412	-0.00025213	510.26734027885385	41.328	1.3528	38.348	37.711	39.064	-2.9804					51	25	3	0	0	0	0.72134	1	1841	1841		39.021	0	1	273940	+		52970	30628	43793	43830	57639	57639					0.011256853163104097
SFLPFHLML	9	Oxidation (M)	_SFLPFHLM(Oxidation (M))L_		SFLPFHLM(1)L		SFLPFHLM(71)L	0	0	1		ENST00000293604.10_1_6:30620706-30620838:+|nuORF	ENST00000293604.10_1_6:30620706-30620838:+|nuORF	ENST00000293604.10_1_6:30620706-30620838:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.2646484375	2	560.79662	1119.57869	1.4799	0.00082993	2.7314	0.0015317	4.2113	0.0023617	560.798660932648	142.26	0.94937	142.26	141.79	142.73	0					24	18	2	0	0	0	0.027176	1	16670	16670		71.378	27.261	1	98776			52971	10108	43794	43831	57640	57640		290			0.02368161610615971
SFLRAIAGFL	10	Unmodified	_SFLRAIAGFL_					0	0	0		tr|A0A553SNN6|A0A553SNN6_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_24810PE=3SV=1	tr|A0A553SNN6|A0A553SNN6_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_24810PE=3SV=1	tr|A0A553SNN6|A0A553SNN6_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_24810PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.3246459960938	2	547.821484	1093.62842	1.7433	0.00095504	-0.091711	-5.0241E-05	1.6516	0.0009048	547.8212730861857	129.11	0.56055	129.11	128.79	129.35	0					28	11	3	0	0	0	0.026891	1	14940	14940		39.253	12.56	1	188670			52972	33939	43795	43832	57641	57641					0.08534612610924341
SFLREMKGGK	10	Unmodified	_SFLREMKGGK_					0	0	0			REV__ENST00000407780.7_1_21:45644960-45645059:-|nuORF	REV__ENST00000407780.7_1_21:45644960-45645059:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.849609375	2	576.813333	1151.61211	-0.89402	-0.00051568	-2.6642	-0.0015367	-3.5582	-0.0020524	576.8115212164273	53.327	0.3013	53.327	53.131	53.432	0					12	6	2	0	0	0	0.026688	1	4208	4208		40.778	0	1	508710	+		52973	25453	43796	43833	57642	57642					0.04237163382549625
SFLVGLWTL	9	Unmodified	_SFLVGLWTL_					0	0	0			REV__nc|ENSG00000141524|Q7Z403-3|TMC6	REV__nc|ENSG00000141524|Q7Z403-3|TMC6	MULTI-MSMS	OvCa99_classI_Rep5	1	518.3019409179688	2	518.29731	1034.58007	0.65927	0.0003417	-1.3823	-0.00071643	-0.72301	-0.00037473	518.2965651970186	123.84	0.54667	123.84	123.37	123.92	0					25	11	3	0	0	0	0.18193	1	14293	14293		79.451	16.145	1	929670	+		52974	19744	43797	43834	57643	57643					0.06416118971037577
SFLVIPLEQ	9	Unmodified	_SFLVIPLEQ_					0	0	0		nc|ENSG00000103647|Q9UQ03-2|CORO2B;ENSG00000103647|ENST00000261861|CORO2B	nc|ENSG00000103647|Q9UQ03-2|CORO2B	nc|ENSG00000103647|Q9UQ03-2|CORO2B	MULTI-MSMS	OvCa9_classI_Rep2	2	523.302978515625	2	523.30005	1044.58555	2.6619	0.001393	4.4774	0.002343	7.1393	0.003736	523.3018599593876	27.471	0.3905	24.762	24.56	24.951	-2.7097					14	8	2	0	0	0	0.7044	1	490	490		16.473	0.83134	1	22203			52975	2335	43798	43835	57644	57644					0.06503797762843533
SFMPNSPRF	9	Unmodified	_SFMPNSPRF_					0	0	0		nc|ENSG00000160326|Q9UGQ3-2|SLC2A6;ENSG00000160326|ENST00000371899|SLC2A6;ENST00000485978.1_1_9:136338979-136343630:-|nuORF	nc|ENSG00000160326|Q9UGQ3-2|SLC2A6	nc|ENSG00000160326|Q9UGQ3-2|SLC2A6	MULTI-MSMS	OvCa99_classI_Rep5	1	541.7594604492188	2	541.758027	1081.5015	1.7054	0.0009239	0.50576	0.000274	2.2111	0.0011979	541.7581115521966	92.154	0.79807	92.154	91.879	92.677	0					43	18	3	0	0	0	0.23241	1	9948	9948		70.816	27.952	1	2820200			52976	6059	43799	43836	57645	57645					-0.03599056605685291
SFNHLCPPL	9	Unmodified	_SFNHLCPPL_					0	0	0			REV__ENST00000602726.1_1_19:49631857-49632262:+|nuORF	REV__ENST00000602726.1_1_19:49631857-49632262:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.7794189453125	2	514.25512	1026.49569	1.1673	0.00060029	1.2087	0.00062156	2.376	0.0012219	514.2557498427866	123.32	0.6089	123.32	123	123.61	0					26	12	3	0	0	0	0.027462	1	14181	14181		33.516	13.034	1	150090	+		52977	28045	43800	43837	57646	57646					-0.016501551173860207
SFNRLFFYMQI	11	Unmodified	_SFNRLFFYMQI_					0	0	0			REV__ENSG00000181499|ENST00000321252|OR6T1	REV__ENSG00000181499|ENST00000321252|OR6T1	MULTI-SECPEP	OvCa9_classI_Rep2	2	488.7588195800781	3	489.248074	1464.72239	-0.5998	-0.00029345	0.108	5.2838E-05	-0.4918	-0.00024061	489.2483316108732	68.63	0.94305	66.009	65.622	66.565	-2.6203					44	18	3	0	0	0	0.026345	1	5407	5407		15.921	6.2745	1	109640	+		52978	22236	43801	43838	57647	57647					0.008619636509365591
SFPAWMPRML	10	Unmodified	_SFPAWMPRML_					0	0	0			REV__ENSG00000106246|ENST00000292478|PTCD1	REV__ENSG00000106246|ENST00000292478|PTCD1	MULTI-SECPEP	OvCa9_classI_Rep2	2	617.3452758789062	2	618.306829	1234.59911	-0.82426	-0.00050965	-1.9938	-0.0012328	-2.818	-0.0017424	618.3053879183843	105.86	0.99915	105.42	105.1	106.1	-0.43642					33	19	2	0	0	0	0.026849	1	9835	9835		32.812	11.127	1	32046	+		52979	17783	43802	43839	57648	57648					-0.008809910011905231
SFPIASIT	8	Unmodified	_SFPIASIT_					0	0	0		SBF2|p.L1514Ffs*17|1|0.21|ENSG00000133812|chr11:9795861-9795862|-/TTGGGGATGTTGCCTGGACCTTGGAA|frameshift_variant;ENSG00000133812|ENST00000256190|SBF2;ENST00000533770.5_1_11:9861043-10215451:-|nuORF;nc|ENSG00000133812|Q86WG5-3|SBF2	SBF2|p.L1514Ffs*17|1|0.21|ENSG00000133812|chr11:9795861-9795862|-/TTGGGGATGTTGCCTGGACCTTGGAA|frameshift_variant	SBF2|p.L1514Ffs*17|1|0.21|ENSG00000133812|chr11:9795861-9795862|-/TTGGGGATGTTGCCTGGACCTTGGAA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.1976318359375	2	418.231636	834.448719	0.86595	0.00036217	1.4262	0.00059648	2.2921	0.00095865	418.2321023743698	45.404	0.73088	45.404	45.159	45.89	0					21	16	2	0	0	0	0.028476	1	3154	3154		24.203	4.8428	1	91605			52980	4238	43803	43840	57649	57649					0.024873086031334424
SFPIWRVL	8	Unmodified	_SFPIWRVL_					0	0	0			REV__ENST00000425713.1_1_13:19700631-19713554:+|nuORF	REV__ENST00000425713.1_1_13:19700631-19713554:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	509.7877197265625	2	509.297645	1016.58074	-0.54668	-0.00027842	2.5993	0.0013238	2.0526	0.0010454	509.2983007752814	99.452	0.51668	97.767	97.574	98.091	-1.685					11	9	2	0	0	0	0.028476	1	6704	6704		33.516	0	1	9616	+		52981	25656	43804	43841	57650	57650					0.07310958410766943
SFPLRQRGDPA	11	Unmodified	_SFPLRQRGDPA_					0	0	0			REV__ENSG00000055609|ENST00000262189|KMT2C	REV__ENSG00000055609|ENST00000262189|KMT2C	MULTI-MSMS	OvCa99_classI_Rep5	1	622.3289184570312	2	622.330736	1242.64692	-0.53451	-0.00033264	-3.3325	-0.0020739	-3.867	-0.0024066	622.3286261770553	29.884	0.30084	29.884	29.735	30.036	0					14	5	4	0	0	0	0.72069	1	1111	1111		8.6937	0	1	105310	+		52982	16712	43805	43842	57651	57651					0.03530122514848699
SFPPAYALDL	10	Unmodified	_SFPPAYALDL_					0	0	0			REV__tr|A0A553SNE0|A0A553SNE0_NIACIDehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_24270PE=3SV=1	REV__tr|A0A553SNE0|A0A553SNE0_NIACIDehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_24270PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	546.327880859375	2	547.281857	1092.54916	-0.42867	-0.0002346	-3.2454	-0.0017762	-3.6741	-0.0020108	547.2799844935798	104.87	1.0382	104.29	103.92	104.96	-0.57639					30	20	2	0	0	0	0.02658	1	9708	9708		64.207	36.325	1	27062	+		52983	30412	43806	43843	57652	57652					0.006589208661353041
SFPVQARVL	9	Unmodified	_SFPVQARVL_					0	0	0			REV__ENST00000541969.1_1_12:6969646-6972391:+|nuORF	REV__ENST00000541969.1_1_12:6969646-6972391:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.7964782714844	2	508.798009	1015.58147	0.15989	8.1351E-05	-0.09325	-4.7445E-05	0.066639	3.3906E-05	508.79770880532556	111.59	1.4617	110.08	109.68	111.15	-1.5111					73	27	4	0	0	0	0.36502	1	10311	10311		55.504	0	1	395290	+		52984	18044	43807	43844	57653	57653					0.07429753059807354
SFPYLMVIL	9	Unmodified	_SFPYLMVIL_					0	0	0		tr|A0A553SGG7|A0A553SGG7_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_10845PE=3SV=1	tr|A0A553SGG7|A0A553SGG7_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_10845PE=3SV=1	tr|A0A553SGG7|A0A553SGG7_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_10845PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2886962890625	2	541.801371	1081.58819	1.6672	0.0009033	4.3433	0.0023532	6.0105	0.0032565	541.8034782149196	92.44	0.41685	92.44	92.26	92.677	0					12	9	2	0	0	0	0.027449	1	9988	9988		17.365	0	1	171070			52985	33155	43808	43845	57654	57654					0.05065929896159105
SFQDRLLH	8	Unmodified	_SFQDRLLH_					0	0	0		ENSG00000118160|ENST00000236877|SLC8A2	ENSG00000118160|ENST00000236877|SLC8A2	ENSG00000118160|ENST00000236877|SLC8A2	MULTI-MSMS	OvCa99_classI_Rep5	1	508.2696838378906	2	508.269616	1014.52468	-0.48717	-0.00024761	-0.069332	-3.5239E-05	-0.5565	-0.00028285	508.2694435147243	33.705	0.73147	33.705	33.285	34.017	0					20	14	2	0	0	0	0.68704	1	1577	1577		45.972	0.020292	1	570600			52986	3291	43809	43846	57655	57655					0.017997055032765275
SFQILKPAEK	10	Unmodified	_SFQILKPAEK_					0	0	0		nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000186298|ENST00000335007|PPP1CC	nc|ENSG00000186298|P36873-2|PPP1CC	nc|ENSG00000186298|P36873-2|PPP1CC	MULTI-MSMS	OvCa9_classI_Rep2	2	580.8388671875	2	580.837331	1159.66011	0.52161	0.00030297	2.2722	0.0013198	2.7939	0.0016228	580.8384501537045	91.799	4.0228	90.563	88.747	92.77	-1.2355					168	77	3	0	0	0	0.50999	1	8173	8173		52.937	4.9772	1	640260			52987	8328	43810	43847	57656	57656					0.08666560574192772
SFQLPLPIN	9	Unmodified	_SFQLPLPIN_					0	0	0			REV__ENST00000261461.6_2_1:212534734-212534791:+|nuORF	REV__ENST00000261461.6_2_1:212534734-212534791:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.8200073242188	2	514.792392	1027.57023	2.2053	0.0011353	-3.8947	-0.002005	-1.6895	-0.00086972	514.7902910108483	80.653	0.55311	80.653	80.274	80.827	0					15	12	2	0	0	0	0.027411	1	8251	8251		54.776	0	1	338270	+		52988	23950	43811	43848	57657	57657					0.057549309656678815
SFQVEARDA	9	Unmodified	_SFQVEARDA_					0	0	0		nc|ENSG00000138650|Q9P2E7-2|PCDH10;ENSG00000138650|ENST00000264360|PCDH10	nc|ENSG00000138650|Q9P2E7-2|PCDH10	nc|ENSG00000138650|Q9P2E7-2|PCDH10	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.6063232421875	2	511.748713	1021.48287	-0.22799	-0.00011667	1.0242	0.00052412	0.79619	0.00040745	511.7491813352826	60.218	0.39788	60.218	60.079	60.477	0					12	9	2	0	0	0	0.027462	1	5250	5250		29.15	0	1	440840			52989	4705	43812	43849	57658	57658					-0.027008949759192546
SFRIKALEL	9	Unmodified	_SFRIKALEL_					0	0	0		nc|ENSG00000205810|Q07444-2|KLRC3	nc|ENSG00000205810|Q07444-2|KLRC3	nc|ENSG00000205810|Q07444-2|KLRC3	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.2952880859375	2	538.826766	1075.63898	1.7169	0.00092513	-1.1768	-0.00063409	0.54015	0.00029105	538.8258497397337	110.11	0.76669	110.11	109.86	110.63	0					19	16	2	0	0	0	0.027453	1	12510	12510		30.318	0	1	167080			52990	15277	43813	43850	57659	57659					0.1041859526535518
SFRKFGAPPPQ	11	Unmodified	_SFRKFGAPPPQ_					0	0	0			REV__ENST00000493269.1_1_6:88224133-88226588:-|nuORF	REV__ENST00000493269.1_1_6:88224133-88226588:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	411.2255859375	3	411.224257	1230.65094	1.0432	0.00042897	-1.2364	-0.00050842	-0.1932	-7.9449E-05	411.2237042568663	56.983	0.86438	56.983	56.744	57.609	0					53	19	4	0	0	0	0.57194	1	4757	4757		47.228	2.2055	1	3921400	+		52991	26701	43814	43851	57660	57660					0.04484212008560462
SFRKFGAPPPQ	11	Unmodified	_SFRKFGAPPPQ_					0	0	0			REV__ENST00000493269.1_1_6:88224133-88226588:-|nuORF	REV__ENST00000493269.1_1_6:88224133-88226588:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	411.224257	1230.65094	1.0432	0.00042897	-1.2364	-0.00050842	-0.1932	-7.9449E-05	411.2237042568663	56.983	0.86438	56.983	56.744	57.609	0	0	0	NaN	47.228	53	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3921400	+		52992	26701	43814	43851							0.04484212008560462
SFRLDGALVE	10	Unmodified	_SFRLDGALVE_					0	0	0			REV__ENSG00000184144|ENST00000331830|CNTN2	REV__ENSG00000184144|ENST00000331830|CNTN2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.788330078125	2	553.795663	1105.57677	3.3572	0.0018592	-1.9629	-0.0010871	1.3943	0.00077214	553.7950320402118	134.43	0.69403	132.9	132.49	133.18	-1.5257					20	13	2	0	0	0	0.027028	1	12957	12957		12.812	1.3007	1	6276.4	+		52993	22405	43815	43852	57661	57661					0.028208241263882883
SFRLDGALVE	10	Unmodified	_SFRLDGALVE_					0	0	0			REV__ENSG00000184144|ENST00000331830|CNTN2	REV__ENSG00000184144|ENST00000331830|CNTN2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	553.795663	1105.57677	0.97408	0.00053944	-0.18368	-0.00010172	0.79041	0.00043772	553.7954860247435	133.32	0.19745	133.09	132.97	133.16	-0.22696	0.092893	0.00011519	NaN	12.812	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7462.3	+		52994	22405	43815	43852							0.028208241263882883
SFRLVSFPE	9	Unmodified	_SFRLVSFPE_					0	0	0			REV__nc|ENSG00000020922|P49959-2|MRE11	REV__nc|ENSG00000020922|P49959-2|MRE11	MULTI-MSMS	OvCa9_classI_Rep3	3	541.2884521484375	2	541.287474	1080.5604	1.4085	0.00076238	-1.4639	-0.00079238	-0.055416	-2.9996E-05	541.2865232608585	113.35	1.4765	112.27	112.01	113.48	-1.0753					64	28	3	0	0	0	0.40667	1	8336	8336		51.335	5.3632	1	257830	+		52995	16543	43816	43853	57662	57662					0.023337429602861448
SFRMTPSLII	10	Unmodified	_SFRMTPSLII_					0	0	0			REV__tr|A0A553SG64|A0A553SG64_NIACIMetal-dependenthydrolaseOS=NialliacirculansOX=1397GN=CEQ21_10215PE=4SV=1	REV__tr|A0A553SG64|A0A553SG64_NIACIMetal-dependenthydrolaseOS=NialliacirculansOX=1397GN=CEQ21_10215PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	582.7975463867188	2	582.825909	1163.63727	-0.7499	-0.00043706	-0.15859	-9.2432E-05	-0.9085	-0.0005295	582.8255265053498	105.9	0.57452	104.55	104.35	104.93	-1.3482					15	10	2	0	0	0	0.027021	1	7446	7446		10.265	0	1	18562	+		52996	29666	43817	43854	57663	57663					0.06199218185133759
SFRTLIVLL	9	Unmodified	_SFRTLIVLL_					0	0	0		NDST4|p.L235*|1|0.48|ENSG00000138653|chr4:115076333-115076333|A/-|frameshift_variant;ENSG00000138653|ENST00000264363|NDST4	NDST4|p.L235*|1|0.48|ENSG00000138653|chr4:115076333-115076333|A/-|frameshift_variant	NDST4|p.L235*|1|0.48|ENSG00000138653|chr4:115076333-115076333|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	531.3402709960938	2	531.33951	1060.66447	0.76702	0.00040755	1.4986	0.00079626	2.2656	0.0012038	531.3402607079814	140.29	2.3131	140.29	139.97	142.29	0					124	46	5	0	0	0	0.31747	1	16432	16432		60.972	9.6365	1	3646000			52997	4706	43818	43855	57664	57664					0.13656069787793967
SFRTVAFVI	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SFRTVAFVI_					1	0	0			REV__ENSG00000164494|ENST00000369037|PDSS2	REV__ENSG00000164494|ENST00000369037|PDSS2	MULTI-MSMS	OvCa99_classI_Rep5	1	541.3070678710938	2	541.305667	1080.59678	1.3945	0.00075487	-1.3736	-0.00074356	0.02091	1.1319E-05	541.3044161703891	111.35	1.0283	111.35	110.76	111.79	0					59	22	4	0	0	0	0.35444	1	12659	12659		56.721	9.0637	1	1550700	+		52998	20992	43819	43856	57665	57665					0.059706198569983826
SFRYLINN	8	Unmodified	_SFRYLINN_					0	0	0			REV__ENST00000519376.5_1_8:408371-417959:+|nuORF	REV__ENST00000519376.5_1_8:408371-417959:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	512.8353271484375	2	513.771991	1025.52943	-0.25879	-0.00013296	3.2096	0.001649	2.9508	0.001516	513.7736210176633	90.072	0.82006	87.992	87.644	88.464	-2.0805					21	15	2	0	0	0	0.028476	1	5540	5540		42.396	11.892	1	25556	+		52999	20058	43820	43857	57666	57666					0.017685896460534423
SFSFMVSTFF	10	Unmodified	_SFSFMVSTFF_					0	0	0		ENSG00000167972|ENST00000301732|ABCA3;ENST00000563623.5_1_16:2339371-2378589:-|nuORF	ENSG00000167972|ENST00000301732|ABCA3;ENST00000563623.5_1_16:2339371-2378589:-|nuORF	ENSG00000167972|ENST00000301732|ABCA3	MULTI-MSMS	OvCa9_classI_Rep3	3	600.2713012695312	2	600.275718	1198.53688	-4.8728	-0.002925	-1.2151	-0.00072937	-6.0878	-0.0036544	600.2748840186918	159.86	2.843	158.53	158.01	160.85	-1.3316					169	56	5	0	0	0	0.58282	2	13828	13828;13962		44.117	3.6978	1	277240			53000	6854;13790	43821	43858	57667;57668	57667					-0.05444438868562429
SFSFYISYW	9	Unmodified	_SFSFYISYW_					0	0	0		chr16:13203549-13350180|107|10.6|0.57|4.22|+|0|TE_info:MLT2B3,MLT2B3_dup2890,ERVL,LTR,acceptor,+,13350180,13350514|SHISA9,None|6	chr16:13203549-13350180|107|10.6|0.57|4.22|+|0|TE_info:MLT2B3,MLT2B3_dup2890,ERVL,LTR,acceptor,+,13350180,13350514|SHISA9,None|6	chr16:13203549-13350180|107|10.6|0.57|4.22|+|0|TE_info:MLT2B3,MLT2B3_dup2890,ERVL,LTR,acceptor,+,13350180,13350514|SHISA9,None|6	MULTI-MSMS	OvCa9_classI_Rep3	3	600.272216796875	2	600.274032	1198.53351	-4.8728	-0.002925	1.5927	0.00095604	-3.2801	-0.001969	600.2748840186918	159.86	2.843	158.53	158.01	160.85	-1.3316					169	56	5	0	0	0	0.61208	1	13834	13834		30.504	2.6214	1	277240			53001	368	43822	43859	57669	57669					-0.057813656509324574
SFSGPPLFY	9	Unmodified	_SFSGPPLFY_					0	0	0			REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|72|2|sense	REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|72|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.271240234375	2	507.750193	1013.48583	-0.66714	-0.00033874	-1.4511	-0.00073682	-2.1183	-0.0010756	508.25226863220206	53.462	0.77232	53.462	53.043	53.815	0					28	17	3	0	0	0	0.027456	1	4223	4223		38.806	0	1	201590	+		53002	28263	43823	43860	57670	57670					-0.020370198510931914
SFSGRTGLGEL	11	Unmodified	_SFSGRTGLGEL_					0	0	0		ENST00000550560.1_1_19:58512579-58514018:-|nuORF	ENST00000550560.1_1_19:58512579-58514018:-|nuORF	ENST00000550560.1_1_19:58512579-58514018:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	562.296875	2	562.290745	1122.56694	1.8796	0.0010569	3.4312	0.0019293	5.3107	0.0029862	562.2929834642777	146.92	0.78777	146.92	146.62	147.41	0					41	15	4	0	0	0	0.65063	1	17182	17182		40.058	3.6114	1	160130			53003	13590	43824	43861	57671	57671					0.010556361210092291
SFSITTKKL	9	Unmodified	_SFSITTKKL_					0	0	0			REV__ENSG00000279514|ENST00000623907|OR4C16	REV__ENSG00000279514|ENST00000623907|OR4C16	MULTI-MSMS	OvCa9_classI_Rep2	2	512.8050537109375	2	512.8055	1023.59645	0.96769	0.00049623	-0.86044	-0.00044124	0.10725	5.4996E-05	512.8048988441653	129.99	1.0876	129.77	129.46	130.55	-0.22696					55	21	4	0	0	0	0.48324	1	12777	12777		44.117	0	1	154290	+		53004	23654	43825	43862	57672	57672					0.08559200137142398
SFSLLTVTGS	10	Unmodified	_SFSLLTVTGS_					0	0	0			REV__nc|ENSG00000144550|Q8IYJ1-2|CPNE9	REV__nc|ENSG00000144550|Q8IYJ1-2|CPNE9	MULTI-MSMS	OvCa9_classI_Rep3	3	506.27337646484375	2	506.27149	1010.52843	1.7132	0.00086734	2.8503	0.001443	4.5635	0.0023104	506.2727467608177	54.771	2.6321	51.6	50.779	53.411	-3.1715					173	88	3	0	0	0	0.78463	1	1372	1372		20.947	0.4651	1	154000	+		53005	19917	43826	43863	57673	57673					0.023583304864814636
SFSLPLPSSL	10	Unmodified	_SFSLPLPSSL_					0	0	0		ENST00000370790.5_1_X:133930354-133930591:-|nuORF	ENST00000370790.5_1_X:133930354-133930591:-|nuORF	ENST00000370790.5_1_X:133930354-133930591:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.277099609375	2	524.289682	1046.56481	-0.87988	-0.00046131	2.0489	0.0010742	1.169	0.0006129	524.2922776400933	49.736	0.14854	46.975	46.868	47.017	-2.7603					4	2	2	0	0	0	0.02661	1	3161	3161		40.778	0	1	4532.4			53006	10938	43827	43864	57674	57674					0.04339207383191024
SFSPEDRLL	9	Unmodified	_SFSPEDRLL_					0	0	0		ENST00000342247.9_1_22:18033283-18033391:+|nuORF	ENST00000342247.9_1_22:18033283-18033391:+|nuORF	ENST00000342247.9_1_22:18033283-18033391:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.314453125	2	532.274564	1062.53457	1.8826	0.0010021	-1.2547	-0.00066786	0.62789	0.00033421	532.2732148558962	117.31	0.75246	117.31	117.09	117.84	0					23	15	2	0	0	0	0.027433	1	13442	13442		45.972	0	1	177390			53007	10576	43828	43865	57675	57675					0.0058084871798200766
SFSPLRVR	8	Unmodified	_SFSPLRVR_					0	0	0		ENST00000263997.10_1_16:68332069-68332321:-|nuORF	ENST00000263997.10_1_16:68332069-68332321:-|nuORF	ENST00000263997.10_1_16:68332069-68332321:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	481.28338623046875	2	481.282526	960.550499	-0.81055	-0.0003901	0.44052	0.00021201	-0.37003	-0.00017809	481.28269787534566	57.799	2.0625	55.007	54.377	56.44	-2.7921					121	40	4	0	0	0	0.73626	1	4162	4162		33.516	0	1	1037900			53008	9922	43829	43866	57676	57676					0.06864599745563282
SFSRKQGKN	9	Unmodified	_SFSRKQGKN_					0	0	0			REV__nc|ENSG00000165732|Q9NR30-2|DDX21	REV__nc|ENSG00000165732|Q9NR30-2|DDX21	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.2860107421875	2	526.285797	1050.55704	-1.0148	-0.00053409	3.1959	0.0016819	2.181	0.0011479	526.2873096136325	104.41	1.7347	102.29	101.96	103.69	-2.1192					86	33	4	0	0	0	0.48047	1	9480	9480		44.377	0.26039	1	563340	+		53009	21113	43830	43867	57677	57677					0.03378492906290376
SFSTISEKL	9	Unmodified	_SFSTISEKL_					0	0	0		ENSG00000099203|ENST00000214869|TMED1	ENSG00000099203|ENST00000214869|TMED1	ENSG00000099203|ENST00000214869|TMED1	MULTI-MSMS	OvCa9_classI_Rep3	3	506.27435302734375	2	506.27149	1010.52843	1.7132	0.00086734	2.8503	0.001443	4.5635	0.0023104	506.2727467608177	54.771	2.6321	51.6	50.779	53.411	-3.1715					173	88	3	0	0	0	0.69123	1	1401	1401		20.947	0.4651	1	154000			53010	1959	43831	43868	57678	57678					0.023583304864928323
SFSTVHEKF	9	Unmodified	_SFSTVHEKF_					0	0	0		ENST00000505303.5_1_5:110428043-110447004:+|nuORF;ENSG00000134987|ENST00000513710|WDR36;nc|ENSG00000134987|Q8NI36|WDR36	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	ENST00000505303.5_1_5:110428043-110447004:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	541.2703857421875	2	541.269281	1080.52401	-0.023686	-1.282E-05	-0.56063	-0.00030345	-0.58432	-0.00031627	541.2689210609803	56.812	1.3206	56.812	56.538	57.859	0					83	30	5	0	0	0	0.046778	3	4750	4727;4750;4777		120.87	21.493	1	9866800			53011	4348	43832	43869	57679;57680;57681	57680					-0.01303133936426093
SFSVAPLHIN	10	Unmodified	_SFSVAPLHIN_					0	0	0		ENST00000462324.1_1_1:120266943-120272245:+|nuORF	ENST00000462324.1_1_1:120266943-120272245:+|nuORF	ENST00000462324.1_1_1:120266943-120272245:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	542.7947998046875	2	542.792924	1083.57129	0.33382	0.00018119	-0.38643	-0.00020975	-0.052614	-2.8558E-05	542.7926281175575	130.39	0.69379	130.16	129.91	130.6	-0.22697					29	13	3	0	0	0	0.67931	1	12823	12823		32.812	0	1	50501			53012	12199	43833	43870	57682	57682					0.032851453345756454
SFSYGSKE	8	Unmodified	_SFSYGSKE_					0	0	0			REV__ENST00000525598.1_1_11:118984446-118985209:+|nuORF	REV__ENST00000525598.1_1_11:118984446-118985209:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	452.70452880859375	2	452.705983	903.397412	-0.65431	-0.00029621	-3.8732	-0.0017534	-4.5275	-0.0020496	452.7043772819255	27.216	1.1473	27.216	27.043	28.19	0					60	22	5	0	0	0	0.66992	1	804	804		49.442	3.4693	1	4240800	+		53013	27114	43834	43871	57683	57683					-0.058150601615579944
SFSYLPIRLLL	11	Unmodified	_SFSYLPIRLLL_					0	0	0			REV__nc|ENSG00000101955|P78539-3|SRPX	REV__nc|ENSG00000101955|P78539-3|SRPX	MULTI-SECPEP	OvCa9_classI_Rep2	2	441.78851318359375	3	441.267463	1320.78056	1.5345	0.00067715	-4.4348	-0.0019569	-2.9002	-0.0012798	441.2652961138429	64.768	0.78348	62.044	61.758	62.541	-2.7245					27	14	3	0	0	0	0.025612	1	4981	4981		29.551	17.344	1	28834	+		53014	17528	43835	43872	57684	57684					0.1329996856784419
SFTDEHPVT	9	Unmodified	_SFTDEHPVT_					0	0	0			REV__ENSG00000225614|ENST00000565624|ZNF469	REV__ENSG00000225614|ENST00000565624|ZNF469	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.287841796875	2	516.735271	1031.45599	-1.0279	-0.00053114	-3.2161	-0.0016619	-4.244	-0.002193	516.7340360911611	39.834	0.12691	39.834	39.756	39.883	0					4	2	2	0	0	0	0.027462	1	2375	2375		24.203	6.8378	1	48447	+		53015	23364	43836	43873	57685	57685					-0.05848003587107087
SFTGRAKRSFR	11	Unmodified	_SFTGRAKRSFR_					0	0	0			REV__ENST00000435312.5_1_17:46622641-46625765:+|nuORF	REV__ENST00000435312.5_1_17:46622641-46625765:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	438.2469177246094	3	438.245944	1311.716	1.181	0.00051758	1.0087	0.00044208	2.1898	0.00095966	438.2463941604818	43.965	2.0387	41.255	40.758	42.797	-2.7097					118	40	4	0	0	0	0.72297	1	2501	2501		21.78	0	1	1317400	+		53016	25769	43837	43874	57686	57686					0.0726120653439466
SFTLHVVAL	9	Unmodified	_SFTLHVVAL_					0	0	0			REV__tr|A0A7D6VXA7|A0A7D6VXA7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12095PE=4SV=1	REV__tr|A0A7D6VXA7|A0A7D6VXA7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12095PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	493.78717041015625	2	493.78711	985.559667	-0.2692	-0.00013293	-0.32819	-0.00016205	-0.59738	-0.00029498	493.7867393201552	121.47	1.3357	121.27	120.95	122.29	-0.19718					61	26	3	0	0	0	0.34496	1	11754	11754		57.811	5.5121	1	176810	+		53017	31772	43838	43875	57687	57687					0.06630948311226348
SFTLHVVAL	9	Unmodified	_SFTLHVVAL_					0	0	0			REV__tr|A0A7D6VXA7|A0A7D6VXA7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12095PE=4SV=1	REV__tr|A0A7D6VXA7|A0A7D6VXA7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12095PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	493.786376953125	2	493.78711	985.559667	1.1397	0.00056278	-1.3973	-0.00068994	-0.25753	-0.00012716	493.786264516808	122.62	1.6631	121.59	121.32	122.98	-1.0286					75	31	3	0	0	0	0.25214	1	9434	9434		68.485	2.0554	1	255040	+		53018	31772	43838	43875	57688	57688					0.06630948311226348
SFTRRHACS	9	Unmodified	_SFTRRHACS_					0	0	0			REV__ENST00000607286.5_1_5:476455-476563:+|nuORF	REV__ENST00000607286.5_1_5:476455-476563:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	532.3096923828125	2	532.75635	1063.49815	-2.1988	-0.0011714	-2.2431	-0.001195	-4.4419	-0.0023665	532.755021020014	67.954	0.59027	65.293	64.991	65.581	-2.661					16	11	2	0	0	0	0.027462	1	5346	5346		30.504	0	1	16235	+		53019	28084	43839	43876	57689	57689					-0.03106306659697111
SFTSNTTSL	9	Unmodified	_SFTSNTTSL_					0	0	0		tr|A0A7D6VY33|A0A7D6VY33_9CLOTTrypsin-likepeptidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19755PE=3SV=1	tr|A0A7D6VY33|A0A7D6VY33_9CLOTTrypsin-likepeptidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19755PE=3SV=1	tr|A0A7D6VY33|A0A7D6VY33_9CLOTTrypsin-likepeptidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19755PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.78173828125	2	479.229822	956.445091	1.5746	0.0007546	0.98063	0.00046994	2.5552	0.0012245	479.2302917077397	83.042	0.38702	83.042	82.906	83.293	0					14	8	2	0	0	0	0.027462	1	8639	8639		21.96	0	1	140140			53020	35314	43840	43877	57690	57690					-0.03487405961368495
SFVAILTE	8	Unmodified	_SFVAILTE_					0	0	0			REV__tr|A0A7D6ZIP8|A0A7D6ZIP8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07925PE=4SV=1	REV__tr|A0A7D6ZIP8|A0A7D6ZIP8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07925PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	440.2333679199219	2	440.244744	878.474934	1.2458	0.00054846	1.3855	0.00060995	2.6313	0.0011584	440.2457405329191	52.935	0.25787	52.935	52.741	52.999	0					7	5	2	0	0	0	0.028476	1	4176	4176		17.365	0	1	68553	+		53021	32065	43841	43878	57691	57691					0.03083577774623336
SFVALGGDN	9	Unmodified	_SFVALGGDN_					0	0	0		nc|ENSG00000066230|P48764-2|SLC9A3;ENSG00000066230|ENST00000264938|SLC9A3	nc|ENSG00000066230|P48764-2|SLC9A3	nc|ENSG00000066230|P48764-2|SLC9A3	MULTI-SECPEP	OvCa99_classI_Rep5	1	439.5628967285156	2	440.213975	878.413397	3.8488	0.0016943	-1.0244	-0.00045094	2.8244	0.0012434	440.21339459441634	86.631	0.29031	86.631	86.471	86.761	0					10	6	2	0	0	0	0.027461	1	9134	9134		40.778	7.2626	1	156720			53022	1346	43842	43879	57692	57692					-0.030673539246549808
SFVFSFIVL	9	Unmodified	_SFVFSFIVL_					0	0	0		ENST00000383686.2_1_3:110611078-110612293:-|nuORF	ENST00000383686.2_1_3:110611078-110612293:-|nuORF	ENST00000383686.2_1_3:110611078-110612293:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	529.7996215820312	2	529.799686	1057.58482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	152.49	1	151.06	150.56	151.56	-1.435								0	0	0	0.21446	1	15090	15090		24.203	3.2558	1				53023	11185	43843	43880	57693	57693					0.058330031137984406
SFVNPIRLKPP	11	Unmodified	_SFVNPIRLKPP_					0	0	0			REV__nc|ENSG00000152527|Q8IVE3-3|PLEKHH2	REV__nc|ENSG00000152527|Q8IVE3-3|PLEKHH2	MULTI-MSMS	OvCa99_classI_Rep5	1	634.3781127929688	2	634.379697	1266.74484	0.70958	0.00045014	-3.9824	-0.0025264	-3.2728	-0.0020762	634.3769097150116	164.24	2.8363	164.24	163	165.84	0					295	106	3	0	0	0	0.70865	2	19102	19102;19250		26.693	5.746	1	532610	+		53024	20292	43844	43881	57694;57695	57694					0.12213931110841258
SFVNSLWN	8	Unmodified	_SFVNSLWN_					0	0	0		Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|66|2|sense	Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|66|2|sense	Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|66|2|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	483.7416687011719	2	483.737617	965.460681	0.23156	0.00011201	-0.26025	-0.00012589	-0.028691	-1.3879E-05	483.73733717765083	57.794	0.8816	57.794	57.522	58.403	0					50	20	4	0	0	0	0.48084	1	4871	4871		79.451	10.966	1	3486500			53025	14375	43845	43882	57696	57696					-0.02343074653686017
SFVQKFAAP	9	Unmodified	_SFVQKFAAP_					0	0	0			REV__ENST00000481865.5_1_3:195611475-195611958:-|nuORF	REV__ENST00000481865.5_1_3:195611475-195611958:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.7593688964844	2	497.77146	993.528367	-0.69014	-0.00034353	2.1411	0.0010658	1.4509	0.00072223	497.7725112972542	65.524	0.33835	62.039	61.84	62.179	-3.4854					9	6	2	0	0	0	0.02744	1	4717	4717		44.377	0	1	23896	+		53026	26491	43846	43883	57697	57697					0.031343752771249456
SFVREGSI	8	Unmodified	_SFVREGSI_					0	0	0			REV__tr|A0A553SU67|A0A553SU67_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_06460PE=4SV=1	REV__tr|A0A553SU67|A0A553SU67_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_06460PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	447.73876953125	2	447.737617	893.460681	0.75778	0.00033929	-0.76539	-0.0003427	-0.0076081	-3.4064E-06	447.7371514685101	62.682	0.75923	62.682	62.46	63.219	0					48	18	4	0	0	0	0.48084	1	5587	5587		79.451	2.1334	1	4774700	+		53027	31045	43847	43884	57698	57698					0.009689253463307068
SFVREGSI	8	Unmodified	_SFVREGSI_					0	0	0			REV__tr|A0A553SU67|A0A553SU67_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_06460PE=4SV=1	REV__tr|A0A553SU67|A0A553SU67_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_06460PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	447.737617	893.460681	0.75778	0.00033929	-0.76539	-0.0003427	-0.0076081	-3.4064E-06	447.7371514685101	62.682	0.75923	62.682	62.46	63.219	0	0	0	NaN	79.451	48	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4774700	+		53028	31045	43847	43884							0.009689253463307068
SFWGGGRTQD	10	Unmodified	_SFWGGGRTQD_					0	0	0		ENST00000372990.5_1_1:39384870-39384927:-|nuORF	ENST00000372990.5_1_1:39384870-39384927:-|nuORF	ENST00000372990.5_1_1:39384870-39384927:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.79541015625	2	555.751787	1109.48902	0.40244	0.00022366	1.0104	0.00056155	1.4129	0.00078521	555.7522544567203	101.6	0.67826	101.6	101.27	101.95	0					22	15	2	0	0	0	0.026714	1	11306	11306		42.864	12.547	1	470660			53029	10994	43848	43885	57699	57699					-0.061343767443759134
SFYRERTPR	9	Unmodified	_SFYRERTPR_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16;nc|ENSG00000221843|Q68DN1|SPATA31H1	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.5756530761719	3	404.547511	1210.6207	0.66301	0.00026822	-2.1139	-0.00085518	-1.4509	-0.00058696	404.54678916700465	68.022	0.38927	68.022	67.803	68.192	0					11	9	2	0	0	0	0.027462	1	6395	6395		6.6596	0	1	123300			53030	9229	43849	43886	57700	57700					0.023818533433541234
SGAFLVLV	8	Unmodified	_SGAFLVLV_					0	0	0		nc|ENSG00000174502|Q7LBE3-2|SLC26A9;ENSG00000174502|ENST00000367135|SLC26A9	nc|ENSG00000174502|Q7LBE3-2|SLC26A9	nc|ENSG00000174502|Q7LBE3-2|SLC26A9	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.2194519042969	2	403.244547	804.47454	4.0972	0.0016522	-1.6034	-0.00064656	2.4938	0.0010056	403.24386558551504	90.252	0.5568	90.252	90.02	90.577	0					28	13	3	0	0	0	0.028476	1	9713	9713		8.2313	0	1	1364700			53031	15185	43850	43887	57701	57701					0.0644820284543357
SGAGLPQPQ	9	Unmodified	_SGAGLPQPQ_					0	0	0			REV__ENSG00000141744|ENST00000269582|PNMT	REV__ENSG00000141744|ENST00000269582|PNMT	MULTI-SECPEP	OvCa99_classI_Rep5	1	427.253173828125	2	427.721967	853.429381	-0.24741	-0.00010582	0.51997	0.0002224	0.27256	0.00011658	427.72207269687516	54.517	0.51192	54.517	54.293	54.805	0					17	11	2	0	0	0	0.027462	1	4436	4436		25.574	3.6142	1	253560	+		53032	19759	43851	43888	57702	57702					-0.0031964768776333585
SGAKLDAAGLH	11	Unmodified	_SGAKLDAAGLH_					0	0	0		ENST00000461023.5_1_16:343426-396314:-|nuORF;nc|ENSG00000103126|O15169-2|AXIN1;ENSG00000103126|ENST00000262320|AXIN1	ENST00000461023.5_1_16:343426-396314:-|nuORF	ENST00000461023.5_1_16:343426-396314:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.8323974609375	2	520.28018	1038.54581	0.44259	0.00023027	-0.58276	-0.0003032	-0.14017	-7.293E-05	520.2798119370235	34.128	0.79487	31.34	31.051	31.846	-2.7881					29	15	3	0	0	0	0.025806	1	1035	1035		31.53	8.0071	1	49989			53033	2283	43852	43889	57703	57703					0.028076708121261618
SGAQTHIHES	10	Unmodified	_SGAQTHIHES_					0	0	0			REV__ENSG00000143520|ENST00000388718|FLG2	REV__ENSG00000143520|ENST00000388718|FLG2	MULTI-MSMS	OvCa99_classI_Rep5	1	533.7496948242188	2	533.749244	1065.48394	1.5825	0.00084465	0.23396	0.00012488	1.8165	0.00096953	533.7491702478208	122.93	0.83616	122.93	122.58	123.42	0					61	17	6	0	0	0	0.3094	2	14152	14152;14175		79.713	10.085	1	997560	+	+	53034	16215	43853	43890	57704;57705	57704					-0.046186806070181774
SGARGLFD	8	Unmodified	_SGARGLFD_					0	0	0			REV__ENST00000585905.1_1_19:45898523-45909561:-|nuORF	REV__ENST00000585905.1_1_19:45898523-45909561:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	411.7088623046875	2	411.70886	821.403166	0.25687	0.00010576	-0.079451	-3.2711E-05	0.17742	7.3045E-05	411.708697919157	25.967	1.4478	25.967	25.743	27.191	0					43	28	4	0	0	0	0.71369	1	624	624		40.573	0	1	500850	+		53035	17690	43854	43891	57706	57706					-0.014679168592351743
SGCEQHQM	8	Unmodified	_SGCEQHQM_					0	0	0			REV__ENSG00000117983|ENST00000529681|MUC5B;REV__ENST00000525715.5_1_11:1244314-1260349:+|nuORF	REV__ENSG00000117983|ENST00000529681|MUC5B	MULTI-SECPEP	OvCa99_classI_Rep5	1	460.2774658203125	2	460.173469	918.332386	0.021404	9.8496E-06	3.7601	0.0017303	3.7815	0.0017402	460.17514786801036	60.855	0.33884	60.855	60.646	60.984	0					12	7	2	0	0	0	0.028476	1	5305	5305		30.504	1.3541	1	167150	+		53036	18375;27118	43855	43892	57707	57707					-0.1300470123071591
SGCFDKAPLDF	11	Unmodified	_SGCFDKAPLDF_					0	0	0			REV__nc|ENSG00000134207|Q5T7P8-2|SYT6	REV__nc|ENSG00000134207|Q5T7P8-2|SYT6	MULTI-MSMS	OvCa9_classI_Rep2	2	600.2733154296875	2	600.273706	1198.53286	-5.4284	-0.0032585	2.6704	0.001603	-2.7581	-0.0016556	600.275203760979	160.29	1.5488	160.06	159.78	161.33	-0.22697					74	31	3	0	0	0	0.72485	1	16314	16314		17.468	0.99486	1	65724	+		53037	19181	43856	43893	57708	57708					-0.05846528362303616
SGDCIIKKLI	10	Unmodified	_SGDCIIKKLI_					0	0	0			REV__nc|ENSG00000288640|O00458-2|IFRD1	REV__nc|ENSG00000288640|O00458-2|IFRD1	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3172607421875	2	545.32046	1088.62637	-6.9928	-0.0038133	-0.3722	-0.00020297	-7.365	-0.0040163	545.3200392463325	162.37	0.78299	161	160.77	161.55	-1.3692					24	16	2	0	0	0	0.73378	1	14156	14156		26.693	1.1189	1	36327	+		53038	16422	43857	43894	57709	57709					0.08559815810826876
SGDLHLPHEE	10	Unmodified	_SGDLHLPHEE_					0	0	0		LBHD1|p.R144Ffs*7|1|0.05|ENSG00000162194|chr11:62667709-62667710|-/AGGAGGCAGGAGATGGGAA|frameshift_variant;ENST00000527679.5_1_11:62434908-62439046:-|nuORF;ENSG00000162194|ENST00000354588|LBHD1;nc|ENSG00000162194|Q9BQE6|LBHD1	LBHD1|p.R144Ffs*7|1|0.05|ENSG00000162194|chr11:62667709-62667710|-/AGGAGGCAGGAGATGGGAA|frameshift_variant	LBHD1|p.R144Ffs*7|1|0.05|ENSG00000162194|chr11:62667709-62667710|-/AGGAGGCAGGAGATGGGAA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.7865600585938	2	567.264727	1132.5149	-0.021083	-1.1959E-05	0.70253	0.00039852	0.68144	0.00038656	567.2649446535997	47.357	0.38671	47.357	47.121	47.508	0					15	8	3	0	0	0	0.026553	1	3415	3415		76.774	17.992	1	201380			53039	6162	43858	43895	57710	57710					-0.04605527292756051
SGDLVIVVDM	10	Unmodified	_SGDLVIVVDM_					0	0	0			REV__ITGA10|p.P814Lfs*28|1|0.27|ENSG00000143127|chr1:145897644-145897647|TGGG/-|frameshift_variant	REV__ITGA10|p.P814Lfs*28|1|0.27|ENSG00000143127|chr1:145897644-145897647|TGGG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	524.2711791992188	2	524.273175	1046.5318	-1.2665	-0.00066397	-2.1182	-0.0011105	-3.3847	-0.0017745	524.2719353297791	119.84	3.5537	119.67	119.05	122.61	-0.17138					188	71	5	0	0	0	0.48198	1	11579	11579		56.721	1.2168	1	902400	+		53040	19818	43859	43896	57711	57711					0.01039257268826077
SGELIPVEIL	10	Unmodified	_SGELIPVEIL_					0	0	0		tr|A0A553SPA5|A0A553SPA5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_25870PE=4SV=1	tr|A0A553SPA5|A0A553SPA5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_25870PE=4SV=1	tr|A0A553SPA5|A0A553SPA5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_25870PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.778564453125	2	535.310615	1068.60668	-2.0413	-0.0010927	0.10264	5.4944E-05	-1.9387	-0.0010378	535.3102403367544	50.71	1.377	47.536	46.995	48.372	-3.1734					50	26	3	0	0	0	0.027021	1	3020	3020		29.15	0	1	183140			53041	34023	43860	43897	57712	57712					0.07511763071738642
SGGGSKGG	8	Unmodified	_SGGGSKGG_					0	0	0			REV__ENSG00000178691|ENST00000322652|SUZ12	REV__ENSG00000178691|ENST00000322652|SUZ12	MULTI-SECPEP	OvCa99_classI_Rep5	1	606.3508911132812	1	606.28418	605.276903	1.4688	0.00089051	3.6086	0.0021878	5.0774	0.0030783	606.2858396436931	119.45	0.39668	119.45	119.1	119.5	0					11	8	2	0	0	0	0.028476	1	13675	13675		12.959	0	1	53280	+		53042	22071	43861	43898	57713	57713					-0.04152423364519109
SGGPRRPER	9	Unmodified	_SGGPRRPER_					0	0	0		ENST00000599594.1_1_19:41188932-41196472:-|nuORF;ENSG00000105245|ENST00000252891|NUMBL	ENST00000599594.1_1_19:41188932-41196472:-|nuORF	ENST00000599594.1_1_19:41188932-41196472:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	506.2738952636719	2	506.275764	1010.53697	-1.4516	-0.00073491	-2.4755	-0.0012533	-3.9271	-0.0019882	506.27432077140526	54.053	1.5966	51.239	50.875	52.472	-2.8139					77	31	5	0	0	0	0.55588	1	3684	3684		37.159	5.2042	1	346790			53043	2432	43862	43899	57714	57714					0.03212741966331123
SGGSSGRQPKV	11	Unmodified	_SGGSSGRQPKV_					0	0	0		ENST00000280758.9_2_12:107712233-107712596:+|nuORF	ENST00000280758.9_2_12:107712233-107712596:+|nuORF	ENST00000280758.9_2_12:107712233-107712596:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	530.27880859375	2	530.280712	1058.54687	-1.1806	-0.00062605	-2.4939	-0.0013225	-3.6745	-0.0019485	530.2791627233665	122.04	1.4342	121.82	121.08	122.51	-0.21803					61	28	3	0	0	0	0.55686	1	11833	11833		48.602	7.1749	1	120110			53044	10043	43863	43900	57715	57715					0.01993885181036603
SGGSWKLLTI	10	Unmodified	_SGGSWKLLTI_					0	0	0		ENSG00000164062|ENST00000296456|APEH	ENSG00000164062|ENST00000296456|APEH	ENSG00000164062|ENST00000296456|APEH	MULTI-MSMS	OvCa9_classI_Rep2	2	531.30322265625	2	531.303124	1060.5917	-1.6359	-0.00086914	1.1184	0.00059418	-0.51752	-0.00027496	531.3036361456938	121.24	1.2365	121.04	120.75	121.99	-0.19718					54	24	3	0	0	0	0.59317	2	11737	11730;11737		42.864	3.6114	1	173930			53045	6398	43864	43901	57716;57717	57717					0.06382315994369492
SGGSWKLLTI	10	Unmodified	_SGGSWKLLTI_					0	0	0		ENSG00000164062|ENST00000296456|APEH	ENSG00000164062|ENST00000296456|APEH	ENSG00000164062|ENST00000296456|APEH	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.302734375	2	531.303124	1060.5917	-0.63946	-0.00033975	0.20053	0.00010654	-0.43893	-0.00023321	531.303122702136	122.55	1.1892	121.18	120.86	122.05	-1.3666					53	23	4	0	0	0	0.50999	1	11574	11574		52.937	1.6012	1	244460			53046	6398	43864	43901	57718	57718					0.06382315994369492
SGHEEKGQE	9	Unmodified	_SGHEEKGQE_					0	0	0			REV__MDN1|p.I5359Kfs*8|1|0.1|ENSG00000112159|chr6:89650154-89650155|-/CATAGCT|frameshift_variant	REV__MDN1|p.I5359Kfs*8|1|0.1|ENSG00000112159|chr6:89650154-89650155|-/CATAGCT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.71978759765625	2	500.720153	999.425752	-1.4109	-0.00070645	-1.5026	-0.00075238	-2.9135	-0.0014588	500.71924144435565	45.392	1.8695	42.353	42.075	43.945	-3.0385					96	35	4	0	0	0	0.59259	1	2326	2326		32.812	3.6629	1	577360	+		53047	18079	43865	43902	57719	57719					-0.07398362252263269
SGHRKTHIA	9	Unmodified	_SGHRKTHIA_					0	0	0		nc|ENSG00000130856|Q9UL36|ZNF236;ENSG00000130856|ENST00000320610|ZNF236;ZNF236|p.C746Lfs*13|1|0.08|ENSG00000130856|chr18:76905359-76905360|-/CTAGCACTTTGGAAGGCCGAGG|frameshift_variant;ZNF236|p.L805Sfs*67|1|0.04|ENSG00000130856|chr18:76908440-76908441|-/AGTTCATTGCTGAATTCATTGTTCAT|frameshift_variant;nc|ENSG00000130856|Q9UL36-2|ZNF236	nc|ENSG00000130856|Q9UL36|ZNF236	nc|ENSG00000130856|Q9UL36|ZNF236	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.7781982421875	2	503.780682	1005.54681	-0.53642	-0.00027024	-3.2273	-0.0016259	-3.7637	-0.0018961	503.7788775374196	22.106	2.3664	20.768	19.646	22.013	-1.3386					123	57	3	0	0	0	0.56889	1	230	230		35.618	1.4457	1	168480			53048	4022	43866	43903	57720	57720					0.044259299717055
SGKPLLTL	8	Unmodified	_SGKPLLTL_					0	0	0		nc|ENSG00000148357|Q8NDA2-4|HMCN2;nc|ENSG00000148357|Q8NDA2-1|HMCN2;ENSG00000148357|ENST00000683500|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	nc|ENSG00000148357|Q8NDA2-4|HMCN2	MULTI-MSMS	OvCa9_classI_Rep2	2	414.7614440917969	2	414.763104	827.511654	-0.47497	-0.000197	-2.6059	-0.0010808	-3.0808	-0.0012778	414.761930419043	140.08	2.1671	139.86	139.4	141.57	-0.22696					123	43	4	0	0	0	0.73938	1	14078	14078		31.955	0	1	474850			53049	5404	43867	43904	57721	57721					0.09099874391188223
SGLGMVILVG	10	Unmodified	_SGLGMVILVG_					0	0	0		tr|A0A7D6VNU4|A0A7D6VNU4_9CLOTCitratetransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_14355PE=4SV=1	tr|A0A7D6VNU4|A0A7D6VNU4_9CLOTCitratetransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_14355PE=4SV=1	tr|A0A7D6VNU4|A0A7D6VNU4_9CLOTCitratetransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_14355PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.770263671875	2	473.275521	944.536489	0.52384	0.00024792	3.2177	0.0015229	3.7415	0.0017708	473.27734381264105	77.788	0.43611	74.972	74.729	75.165	-2.8165					11	8	2	0	0	0	0.026752	1	6232	6232		35.618	8.8222	1	17805			53050	34727	43868	43905	57722	57722					0.06200186202261193
SGLKYVWTKR	10	Unmodified	_SGLKYVWTKR_					0	0	0		ENST00000261427.9_1_4:39782407-39782452:+|nuORF	ENST00000261427.9_1_4:39782407-39782452:+|nuORF	ENST00000261427.9_1_4:39782407-39782452:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	413.24041748046875	3	413.239907	1236.69789	2.1217	0.00087677	0.93404	0.00038598	3.0557	0.0012628	413.24014103402243	64.54	2.2304	61.547	60.987	63.218	-2.9933					100	43	4	0	0	0	0.72532	1	2552	2552		27.644	11.114	1	320450			53051	9864	43869	43906	57723	57723					0.08901071559671436
SGLPVGSEVQL	11	Unmodified	_SGLPVGSEVQL_					0	0	0			REV__chr19:35648403-35649347|155|94.97|0.52|7.52|+|2|COX6B1,None|1	REV__chr19:35648403-35649347|155|94.97|0.52|7.52|+|2|COX6B1,None|1	MULTI-MSMS	OvCa9_classI_Rep3	3	543.2948608398438	2	543.295496	1084.57644	0.18675	0.00010146	-0.069989	-3.8025E-05	0.11676	6.3437E-05	543.2953440892359	118.73	1.3402	117.7	117.24	118.58	-1.0271					50	26	3	0	0	0	0.21979	1	8984	8984		77.318	0.54344	1	104250	+		53052	15974	43870	43907	57724	57724					0.03753404406529626
SGMFQHIEPAG	11	Unmodified	_SGMFQHIEPAG_					0	0	0			REV__tr|A0A7D6VXU8|A0A7D6VXU8_9CLOTMannitol-specificphosphotransferaseenzymeIIAcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_12970PE=4SV=1	REV__tr|A0A7D6VXU8|A0A7D6VXU8_9CLOTMannitol-specificphosphotransferaseenzymeIIAcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_12970PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	587.2666015625	2	587.271498	1172.52844	-3.1111	-0.001827	-4.1177	-0.0024182	-7.2288	-0.0042452	587.2687165321146	138.45	0.88092	137.39	137.1	137.98	-1.0595					32	17	3	0	0	0	0.70142	1	11331	11331		29.17	0	1	35194	+		53053	31790	43871	43908	57725	57725					-0.05091992785196453
SGNEQGKFKI	10	Unmodified	_SGNEQGKFKI_					0	0	0		FAT3|p.F3345Lfs*103|1|0.08|ENSG00000165323|chr11:92840677-92840678|-/AGTTGCCAGGATGTCCCCCCAAAAAA|frameshift_variant;FAT3|p.L3490Wfs*79|1|0.04|ENSG00000165323|chr11:92844285-92844285|T/-|frameshift_variant;FAT3|p.F3624Pfs*89|1|0.54|ENSG00000165323|chr11:92844685-92844686|-/CC|frameshift_variant;FAT3|p.V3625Sfs*97|1|0.52|ENSG00000165323|chr11:92844687-92844688|-/TCTCCATGAATTTTACATTCCAGCATCTC|frameshift_variant;nc|ENSG00000165323|Q8TDW7|FAT3;ENSG00000165323|ENST00000525166|FAT3	FAT3|p.F3345Lfs*103|1|0.08|ENSG00000165323|chr11:92840677-92840678|-/AGTTGCCAGGATGTCCCCCCAAAAAA|frameshift_variant	FAT3|p.F3345Lfs*103|1|0.08|ENSG00000165323|chr11:92840677-92840678|-/AGTTGCCAGGATGTCCCCCCAAAAAA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.2933959960938	2	554.293288	1106.57202	-0.19102	-0.00010588	-1.3608	-0.00075428	-1.5518	-0.00086016	554.2931816622083	63.221	1.5941	59.746	59.386	60.98	-3.475					83	32	6	0	0	0	0.44431	1	4431	4431		62.107	1.1355	1	716740			53054	6551	43872	43909	57726	57726					0.0229993998361806
SGNVEVHKL	9	Unmodified	_SGNVEVHKL_					0	0	0			REV__nc|ENSG00000068078|P22607-3|FGFR3	REV__nc|ENSG00000068078|P22607-3|FGFR3	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.3033752441406	2	491.769448	981.524344	-1.1169	-0.00054925	0.85261	0.00041929	-0.26429	-0.00012997	491.769692686762	36.97	0.68706	36.97	36.751	37.438	0					30	14	4	0	0	0	0.027461	1	2044	2044		58.782	3.2778	1	244370	+		53055	16848	43873	43910	57727	57727					0.03284285783422547
SGNVKEKIKEL	11	Unmodified	_SGNVKEKIKEL_					0	0	0		tr|A0A553SKJ7|A0A553SKJ7_NIACIFructose-1,6-bisphosphataseclass3OS=NialliacirculansOX=1397GN=fbpPE=3SV=1	tr|A0A553SKJ7|A0A553SKJ7_NIACIFructose-1,6-bisphosphataseclass3OS=NialliacirculansOX=1397GN=fbpPE=3SV=1	tr|A0A553SKJ7|A0A553SKJ7_NIACIFructose-1,6-bisphosphataseclass3OS=NialliacirculansOX=1397GN=fbpPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	622.865966796875	2	622.864077	1243.7136	0.88915	0.00055382	2.4124	0.0015026	3.3016	0.0020564	622.8654000115959	131.71	1.5392	130.58	130.24	131.78	-1.1249					80	30	4	0	0	0	0.36853	1	10496	10496		63.426	6.9927	1	257180			53056	33622	43874	43911	57728	57728					0.10149313286092365
SGPENEPLILE	11	Unmodified	_SGPENEPLILE_					0	0	0			REV__ENSG00000091483|ENST00000366560|FH	REV__ENSG00000091483|ENST00000366560|FH	MULTI-MSMS	OvCa99_classI_Rep5	1	599.3087768554688	2	599.303518	1196.59248	1.0173	0.00060969	1.8607	0.0011151	2.878	0.0017248	599.3045242947921	114.98	0.79409	114.98	114.65	115.44	0					28	16	2	0	0	0	0.67529	1	13119	13119		37.812	0.65241	1	828650	+		53057	17250	43875	43912	57729	57729					0.0020506585276507394
SGPHTPVPRP	10	Unmodified	_SGPHTPVPRP_					0	0	0			REV__ENST00000444348.1_1_1:36035435-36040229:-|nuORF	REV__ENST00000444348.1_1_1:36035435-36040229:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	522.7839965820312	2	522.78289	1043.55123	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.912	1	62.427	61.927	62.927	-3.4854								0	0	0	0.13029	1	4767	4767		56.721	6.6965	1		+		53058	25875	43876	43913	57730	57730					0.031193943946163927
SGPKTKAVPKI	11	Unmodified	_SGPKTKAVPKI_					0	0	0		ENST00000460095.1_1_2:201342446-201342566:+|nuORF	ENST00000460095.1_1_2:201342446-201342566:+|nuORF	ENST00000460095.1_1_2:201342446-201342566:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	563.3517456054688	2	563.353148	1124.69174	-0.51442	-0.0002898	-0.73977	-0.00041675	-1.2542	-0.00070655	563.3531834496299	116.13	2.03	116.01	115.64	117.67	-0.11777					126	40	5	0	0	0	0.56391	1	11152	11152		47.96	0	1	2302900			53059	12147	43877	43914	57731	57731					0.13438553328182934
SGPRPEPVGGE	11	Unmodified	_SGPRPEPVGGE_					0	0	0			REV__nc|ENSG00000095539|Q9NTN9-3|SEMA4G	REV__nc|ENSG00000095539|Q9NTN9-3|SEMA4G	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.3455200195312	2	541.26727	1080.51999	-0.20391	-0.00011037	2.9146	0.0015776	2.7107	0.0014672	541.2689904269188	81.284	0.9215	79.635	79.465	80.386	-1.6485					26	17	2	0	0	0	0.025605	1	6927	6927		63.534	0	1	15301	+		53060	17291	43878	43915	57732	57732					-0.017052234301445424
SGRLAVPLAVL	11	Unmodified	_SGRLAVPLAVL_					0	0	0		TMX1|p.S6R|1|0.12|ENSG00000139921|chr14:51240310-51240310|T/G|missense_variant	TMX1|p.S6R|1|0.12|ENSG00000139921|chr14:51240310-51240310|T/G|missense_variant	TMX1|p.S6R|1|0.12|ENSG00000139921|chr14:51240310-51240310|T/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	548.3460083007812	2	548.347866	1094.68118	-2.8317	-0.0015528	-1.2634	-0.00069279	-4.0951	-0.0022456	548.3470450285034	149.61	1.1542	149.38	148.97	150.12	-0.22697					53	22	3	0	0	0	0.72531	1	15198	15198		11.511	0.64546	1	57433			53061	32969	43879	43916	57733	57733					0.13762570673748087
SGTAAVSSAS	10	Unmodified	_SGTAAVSSAS_					0	0	0		ENST00000383701.7_1_3:69061913-69062801:-|nuORF	ENST00000383701.7_1_3:69061913-69062801:-|nuORF	ENST00000383701.7_1_3:69061913-69062801:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.1865539550781	2	419.201064	836.387576	-0.11011	-4.6158E-05	-0.017874	-7.4929E-06	-0.12798	-5.3651E-05	419.2008770952766	29.161	0.49893	29.161	28.937	29.436	0					13	9	2	0	0	0	0.026956	1	1014	1014		19.997	0	1	93339			53062	11188	43880	43917	57734	57734					-0.03716248166949754
SGTVILNLCKI	11	Unmodified	_SGTVILNLCKI_					0	0	0		CPNE4|p.K512Nfs*44|1|0.06|ENSG00000196353|chr3:131542560-131542560|T/-|frameshift_variant;ENSG00000196353|ENST00000429747|CPNE4;chr3:132284170-132285240|150|12.41|0.32|5.28|-|ENST00000512055|CPNE4,CPNE4;nc|ENSG00000196353|Q96A23-2|CPNE4	CPNE4|p.K512Nfs*44|1|0.06|ENSG00000196353|chr3:131542560-131542560|T/-|frameshift_variant	CPNE4|p.K512Nfs*44|1|0.06|ENSG00000196353|chr3:131542560-131542560|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	580.8406372070312	2	580.839017	1159.66348	-1.4543	-0.00084474	1.1995	0.0006967	-0.25486	-0.00014803	580.8393748358645	93.015	4.9536	90.508	87.869	92.823	-2.5072					166	99	4	0	0	0	0.50761	1	8103	8103		53.089	0	1	764120			53063	473	43881	43918	57735	57735					0.09003487356585538
SGVFFIGGP	9	Unmodified	_SGVFFIGGP_					0	0	0			REV__tr|A0A553SL69|A0A553SL69_NIACIprotein-glutamateO-methyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_20065PE=4SV=1	REV__tr|A0A553SL69|A0A553SL69_NIACIprotein-glutamateO-methyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_20065PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	440.767333984375	2	440.731803	879.449054	3.2288	0.001423	-0.77843	-0.00034308	2.4504	0.00108	440.72955904977596	82.141	0.24418	82.141	82.02	82.264	0					8	5	2	0	0	0	0.027456	1	8500	8500		30.504	0	1	55240	+		53064	30194	43882	43919	57736	57736					0.0045072832301684684
SGVGWVRIH	9	Unmodified	_SGVGWVRIH_					0	0	0			REV__ENST00000504872.5_1_5:139941427-139941728:-|nuORF	REV__ENST00000504872.5_1_5:139941427-139941728:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	505.7791442871094	2	505.780151	1009.54575	-5.3397	-0.0027007	2.099	0.0010617	-3.2407	-0.0016391	505.7810830949029	160.38	0.80586	160.15	159.98	160.79	-0.22696					23	15	2	0	0	0	0.59983	1	16324	16324		31.955	0	1	68219	+		53065	15646	43883	43920	57737	57737					0.04135715602797063
SGVLILMLPL	10	Unmodified	_SGVLILMLPL_					0	0	0		ENSG00000181733|ENST00000641125|OR2Z1	ENSG00000181733|ENST00000641125|OR2Z1	ENSG00000181733|ENST00000641125|OR2Z1	MULTI-MSMS	OvCa99_classI_Rep5	1	528.3316040039062	2	528.330296	1054.64604	-0.30277	-0.00015997	-2.1897	-0.0011569	-2.4925	-0.0013169	528.3289725579709	51.11	0.7249	51.11	50.819	51.544	0					39	16	4	0	0	0	0.76627	1	3944	3944		23.042	2.5607	1	1754900			53066	7950	43884	43921	57738	57738					0.12090191821562257
SGVQAELALQ	10	Unmodified	_SGVQAELALQ_					0	0	0		ENSG00000058453|ENST00000375541|CROCC;nc|ENSG00000058453|Q5TZA2-2|CROCC	ENSG00000058453|ENST00000375541|CROCC	ENSG00000058453|ENST00000375541|CROCC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.24249267578125	2	508.274564	1014.53457	-0.082685	-4.2027E-05	-0.57094	-0.00029019	-0.65363	-0.00033222	508.27399852957427	61.397	1.3452	57.967	57.644	58.99	-3.43					47	27	4	0	0	0	0.026548	1	4232	4232		54.722	10.345	1	273950			53067	1245	43885	43922	57739	57739					0.027888487179893673
SGVVHEIGHGI	11	Unmodified	_SGVVHEIGHGI_					0	0	0		ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	ENSG00000012174|ENST00000379484|MBTPS2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.7481689453125	2	552.793455	1103.57236	-0.88683	-0.00049024	4.3412	0.0023998	3.4544	0.0019096	552.7954780587852	41.846	0.26224	38.865	38.696	38.959	-2.9804					7	4	2	0	0	0	0.025806	1	1907	1907		18.262	0	1	30685			53068	973	43886	43923	57740	57740					0.024713597034860868
SGYDTILRV	9	Unmodified	_SGYDTILRV_					0	0	0		nc|ENSG00000061918|Q02153-2|GUCY1B1;nc|ENSG00000061918|Q02153-3|GUCY1B1;ENSG00000061918|ENST00000264424|GUCY1B1	nc|ENSG00000061918|Q02153-2|GUCY1B1	nc|ENSG00000061918|Q02153-2|GUCY1B1	MULTI-MSMS	OvCa99_classI_Rep5	1	512.279052734375	2	512.277106	1022.53966	1.3834	0.0007087	1.0192	0.00052211	2.4026	0.0012308	512.2775721087247	98.225	0.55699	98.225	97.995	98.552	0					23	12	2	0	0	0	0.3249	1	10835	10835		60.118	12.203	1	3003400			53069	1273	43887	43924	57741	57741					0.02929152580634309
SGYLILPDL	9	Unmodified	_SGYLILPDL_					0	0	0		chr14:94062621-94065779|133|19.53|0.06|8.3|-|1|TE_info:L1PB1,L1PB1_dup11175,L1,LINE,donor,+,94065779,94071367|DDX24,None|45	chr14:94062621-94065779|133|19.53|0.06|8.3|-|1|TE_info:L1PB1,L1PB1_dup11175,L1,LINE,donor,+,94065779,94071367|DDX24,None|45	chr14:94062621-94065779|133|19.53|0.06|8.3|-|1|TE_info:L1PB1,L1PB1_dup11175,L1,LINE,donor,+,94065779,94071367|DDX24,None|45	MULTI-MSMS	OvCa9_classI_Rep2	2	495.7812194824219	2	495.778951	989.543348	0.42466	0.00021054	4.1889	0.0020768	4.6136	0.0022873	495.78083557519824	44.24	1.6407	41.53	40.906	42.547	-2.7097					89	32	4	0	0	0	0.61208	1	2509	2509		30.504	0	1	198360			53070	351	43888	43925	57742	57742					0.04815822354487409
SHAIIEIT	8	Unmodified	_SHAIIEIT_					0	0	0			REV__tr|A0A553SSD1|A0A553SSD1_NIACICircadianclockproteinKaiCOS=NialliacirculansOX=1397GN=CEQ21_02800PE=4SV=1	REV__tr|A0A553SSD1|A0A553SSD1_NIACICircadianclockproteinKaiCOS=NialliacirculansOX=1397GN=CEQ21_02800PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.22491455078125	2	442.247818	882.481082	0.71687	0.00031703	-3.705	-0.0016385	-2.9881	-0.0013215	442.24625764001877	29.561	0.24956	29.561	29.436	29.686	0					8	4	2	0	0	0	0.028476	1	1074	1074		11.511	0	1	49072	+		53071	30823	43889	43926	57743	57743					0.0351409600613124
SHALTWKNL	9	Unmodified	_SHALTWKNL_					0	0	0		ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.7767333984375	2	535.293091	1068.57163	-1.4802	-0.00079234	-1.1434	-0.00061206	-2.6236	-0.0014044	535.2925426000537	75.654	0.35229	73.801	73.586	73.938	-1.854					8	6	2	0	0	0	0.027426	1	6237	6237		47.657	5.1829	1	54134			53072	9068	43890	43927	57744	57744					0.04008565054414248
SHCNLTLLKM	10	Carbamidomethyl (C),Oxidation (M)	_SHC(Carbamidomethyl (C))NLTLLKM(Oxidation (M))_	SHC(1)NLTLLKM	SHCNLTLLKM(1)	SHC(62)NLTLLKM	SHCNLTLLKM(62)	0	1	1			REV__tr|A0A553SU74|A0A553SU74_NIACIEndonucleaseOS=NialliacirculansOX=1397GN=CEQ21_06390PE=4SV=1	REV__tr|A0A553SU74|A0A553SU74_NIACIEndonucleaseOS=NialliacirculansOX=1397GN=CEQ21_06390PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	616.8098754882812	2	616.809933	1231.60531	-0.51668	-0.0003187	-2.3812	-0.0014687	-2.8979	-0.0017874	616.8082973173707	61.759	3.6209	61.759	59.156	62.777	0					185	88	4	0	0	0	0.44431	1	5436	5436		62.107	14.45	1	4329000	+		53073	31047	43891	43928	57745	57745	369	687			-0.0012251756036221195
SHCPIILGF	9	Unmodified	_SHCPIILGF_					0	0	0		tr|A0A553SMY9|A0A553SMY9_NIACIPLP-dependentaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_23480PE=3SV=1	tr|A0A553SMY9|A0A553SMY9_NIACIPLP-dependentaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_23480PE=3SV=1	tr|A0A553SMY9|A0A553SMY9_NIACIPLP-dependentaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_23480PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.30438232421875	2	493.760038	985.505523	-0.20348	-0.00010047	-2.1122	-0.0010429	-2.3157	-0.0011434	493.75902840712433	99.074	0.9465	98.181	97.757	98.703	-0.89305					28	18	2	0	0	0	0.027462	1	9025	9025		19.36	0	1	21445			53074	33887	43892	43929	57746	57746					0.012190328880365087
SHDIDPELATQ	11	Unmodified	_SHDIDPELATQ_					0	0	0		nc|ENSG00000007202|Q14667-2|BLTP2;ENSG00000007202|ENST00000528896|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	614.278076171875	2	613.288399	1224.56225	-0.24337	-0.00014926	3.1517	0.0019329	2.9083	0.0017836	613.790878930739	41.225	0.40364	41.225	41.059	41.462	0					13	8	3	0	0	0	0.025759	1	2546	2546		21.686	0	1	95811			53075	896	43893	43930	57747	57747					-0.04105292812414518
SHDKKDRY	8	Unmodified	_SHDKKDRY_					0	0	0			REV__nc|ENSG00000119596|P49750-3|YLPM1	REV__nc|ENSG00000119596|P49750-3|YLPM1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.2890014648438	2	524.762155	1047.50976	-1.6104	-0.0008451	0.87258	0.0004579	-0.73787	-0.0003872	524.7624396556325	44.119	0.70377	41.112	40.891	41.595	-3.0074					24	13	2	0	0	0	0.028476	1	2216	2216		30.504	14.03	1	63126	+		53076	18452	43894	43931	57748	57748					-0.012097863647113627
SHDKKDRY	8	Unmodified	_SHDKKDRY_					0	0	0			REV__nc|ENSG00000119596|P49750-3|YLPM1	REV__nc|ENSG00000119596|P49750-3|YLPM1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	524.762155	1047.50976	0.48407	0.00025402	-1.7237	-0.00090453	-1.2396	-0.0006505	524.761013023787	43.739	0.59594	41.029	40.906	41.502	-2.7097	-0.041293	-0.0020995	NaN	30.504	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18462	+		53077	18452	43894	43931							-0.012097863647113627
SHDWSSLL	8	Unmodified	_SHDWSSLL_					0	0	0			REV__chr3:48479257-48482280|94|35.3|0.39|6.51|-|1|TE_info:FRAM,FRAM_dup1220,Alu,SINE,donor,+,48482280,48482424|SHISA5,None|2	REV__chr3:48479257-48482280|94|35.3|0.39|6.51|-|1|TE_info:FRAM,FRAM_dup1220,Alu,SINE,donor,+,48482280,48482424|SHISA5,None|2	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.80352783203125	2	472.727249	943.439946	1.0431	0.00049312	-3.5706	-0.0016879	-2.5275	-0.0011948	472.725347060777	67.027	0.23915	67.027	66.857	67.096	0					7	5	2	0	0	0	0.028476	1	6251	6251		26.796	7.4361	1	125860	+		53078	15823	43895	43932	57749	57749					-0.03403665033329162
SHEHRERIL	9	Unmodified	_SHEHRERIL_					0	0	0		nc|ENSG00000119326|Q9UBT7-3|CTNNAL1;nc|ENSG00000119326|Q9UBT7-2|CTNNAL1;ENSG00000119326|ENST00000325551|CTNNAL1	nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	nc|ENSG00000119326|Q9UBT7-3|CTNNAL1	MULTI-MSMS	OvCa9_classI_Rep3	3	588.8165893554688	2	588.815253	1175.61595	-0.63539	-0.00037413	2.7678	0.0016297	2.1324	0.0012556	588.8167831837943	129.05	0.98856	127.95	127.56	128.55	-1.1011					50	19	4	0	0	0	0.50149	1	10177	10177		42.396	3.1433	1	135200			53079	3354	43896	43933	57750	57750					0.0351696920060931
SHEQDDHGVV	10	Unmodified	_SHEQDDHGVV_					0	0	0		ENST00000552168.1_1_12:53456565-53457663:+|nuORF	ENST00000552168.1_1_12:53456565-53457663:+|nuORF	ENST00000552168.1_1_12:53456565-53457663:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.7423706054688	2	561.744159	1121.47377	-0.0074871	-4.2058E-06	-0.99166	-0.00055706	-0.99915	-0.00056127	561.7436843955081	127.29	0.80434	125.85	125.64	126.45	-1.4357					18	15	2	0	0	0	0.70152	1	12146	12146		30.318	2.4355	1	28032			53080	13611	43897	43934	57751	57751					-0.08211288332245203
SHEQDDHGVV	10	Unmodified	_SHEQDDHGVV_					0	0	0		ENST00000552168.1_1_12:53456565-53457663:+|nuORF	ENST00000552168.1_1_12:53456565-53457663:+|nuORF	ENST00000552168.1_1_12:53456565-53457663:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	561.744159	1121.47377	1.1384	0.00063947	-1.7628	-0.00099022	-0.62439	-0.00035075	561.7431398582434	126.31	0.68884	126.07	125.8	126.49	-0.2359	0.13979	-0.00022316	NaN	30.318	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19584			53081	13611	43897	43934							-0.08211288332245203
SHEQDDHGVV	10	Unmodified	_SHEQDDHGVV_					0	0	0		ENST00000552168.1_1_12:53456565-53457663:+|nuORF	ENST00000552168.1_1_12:53456565-53457663:+|nuORF	ENST00000552168.1_1_12:53456565-53457663:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	561.744159	1121.47377	0.91201	0.00051232	-1.5971	-0.00089718	-0.68513	-0.00038487	561.7433034333693	126.95	0.72866	125.88	125.6	126.33	-1.0715	-0.058207	-3.7079E-05	NaN	30.318	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32109			53082	13611	43897	43934							-0.08211288332245203
SHFACLLLL	9	Unmodified	_SHFACLLLL_					0	0	0			REV__MER51E_dup213|chr19:56234920-56237271:+|1.2535105915377431|0.3253014843551329|1.95|426.0|24|1|sense	REV__MER51E_dup213|chr19:56234920-56237271:+|1.2535105915377431|0.3253014843551329|1.95|426.0|24|1|sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.81683349609375	2	508.783513	1015.55247	-0.91137	-0.00046369	4.1705	0.0021219	3.2591	0.0016582	508.78562320623575	75.684	1.2349	73.273	72.969	74.204	-2.4106					40	23	2	0	0	0	0.027462	1	3821	3821		25.45	0	1	210470	+		53083	28654	43898	43935	57752	57752					0.04531892439172225
SHFEDKQVQ	9	Unmodified	_SHFEDKQVQ_					0	0	0		ENSG00000165392|ENST00000298139|WRN	ENSG00000165392|ENST00000298139|WRN	ENSG00000165392|ENST00000298139|WRN	MULTI-SECPEP	OvCa9_classI_Rep3	3	559.3333129882812	2	559.26727	1116.51999	0.047944	2.6814E-05	-2.2491	-0.0012579	-2.2012	-0.001231	559.2656939302419	105.67	0.3631	104.33	104.2	104.56	-1.3482					9	6	2	0	0	0	0.027118	1	7432	7432		64.207	0	1	12463			53084	6558	43899	43936	57753	57753					-0.0336122343014722
SHFMPDDKC	9	Unmodified	_SHFMPDDKC_					0	0	0			REV__PLXNA2|p.K289M|1|0.29|ENSG00000076356|chr1:208217057-208217057|T/A|missense_variant	REV__PLXNA2|p.K289M|1|0.29|ENSG00000076356|chr1:208217057-208217057|T/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.8114013671875	2	540.217877	1078.4212	-0.23732	-0.0001282	-0.16702	-9.0228E-05	-0.40434	-0.00021843	540.2176671352885	104.79	0.29978	104.79	104.66	104.96	0					8	6	2	0	0	0	0.027462	1	11746	11746		10.265	0	1	132870	+		53085	29303	43900	43937	57754	57754					-0.11487285991051976
SHFNRIRE	8	Unmodified	_SHFNRIRE_					0	0	0		L1MEg_dup1746|chr2:99099337-99100538:+|1.3153921071676258|0.3908750287807103|1.75|429.0|37|3|sense	L1MEg_dup1746|chr2:99099337-99100538:+|1.3153921071676258|0.3908750287807103|1.75|429.0|37|3|sense	L1MEg_dup1746|chr2:99099337-99100538:+|1.3153921071676258|0.3908750287807103|1.75|429.0|37|3|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.777099609375	2	529.778139	1057.54173	-0.35837	-0.00018986	-1.5625	-0.00082776	-1.9208	-0.0010176	529.7771975949803	128.62	1.3392	127.17	126.9	128.24	-1.4565					52	26	3	0	0	0	0.73938	1	12288	12288		31.955	1.6371	1	171200			53086	14631	43901	43938	57755	57755					0.015256261091053602
SHFSDNQVP	9	Unmodified	_SHFSDNQVP_					0	0	0			REV__nc|ENSG00000163166|Q96ST2-2|IWS1	REV__nc|ENSG00000163166|Q96ST2-2|IWS1	MULTI-SECPEP	OvCa9_classI_Rep2	2	514.7776489257812	2	515.733063	1029.45157	0.10058	5.1874E-05	3.5489	0.0018303	3.6495	0.0018822	515.7346404765511	73.011	0.99126	70.611	70.167	71.158	-2.3999					27	18	2	0	0	0	0.027461	1	5953	5953		49.442	10.189	1	32853	+		53087	28964	43902	43939	57756	57756					-0.06197468009986551
SHFTAVSVFY	10	Unmodified	_SHFTAVSVFY_					0	0	0		ENSG00000172365|ENST00000641342|OR5B2	ENSG00000172365|ENST00000641342|OR5B2	ENSG00000172365|ENST00000641342|OR5B2	MULTI-SECPEP	OvCa9_classI_Rep2	2	578.8579711914062	2	579.284931	1156.55531	-0.93081	-0.00053921	0.67987	0.00039384	-0.25094	-0.00014536	579.2847599375392	74.127	0.84099	72.156	71.745	72.586	-1.9711					22	15	2	0	0	0	0.026752	1	6079	6079		35.618	11.099	1	22721			53088	7294	43903	43940	57757	57757					-0.01670560902334728
SHGDLSCQV	9	Unmodified	_SHGDLSCQV_					0	0	0		GPR68|p.Q206Vfs*133|1|0.06|ENSG00000119714|chr14:91234435-91234436|-/GTAGGAC|frameshift_variant;ENSG00000119714|ENST00000650645|GPR68	GPR68|p.Q206Vfs*133|1|0.06|ENSG00000119714|chr14:91234435-91234436|-/GTAGGAC|frameshift_variant	GPR68|p.Q206Vfs*133|1|0.06|ENSG00000119714|chr14:91234435-91234436|-/GTAGGAC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.7254943847656	2	473.208366	944.40218	-0.008304	-3.9295E-06	0.27181	0.00012862	0.26351	0.00012469	473.2084231426827	43.107	0.3857	43.107	42.926	43.312	0					13	8	2	0	0	0	0.027455	1	2843	2843		34.173	13.691	1	80482			53089	3390	43904	43941	57758	57758					-0.072244992904416
SHGDPQSL	8	Unmodified	_SHGDPQSL_					0	0	0		ENST00000332438.4_1_17:40831559-40832345:-|nuORF	ENST00000332438.4_1_17:40831559-40832345:-|nuORF	ENST00000332438.4_1_17:40831559-40832345:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	420.695556640625	2	420.695949	839.377345	-0.42155	-0.00017735	-2.4304	-0.0010225	-2.852	-0.0011998	420.69479287255325	50.478	0.66201	50.478	50.245	50.907	0					36	14	3	0	0	0	0.70469	1	3835	3835		42.396	8.9032	1	798290			53090	10456	43905	43942	57759	57759					-0.04876811101507883
SHGSQETDEEF	11	Unmodified	_SHGSQETDEEF_					0	0	0		ENSG00000178741|ENST00000322347|COX5A	ENSG00000178741|ENST00000322347|COX5A	ENSG00000178741|ENST00000322347|COX5A	MULTI-MSMS	OvCa99_classI_Rep5	1	633.2498168945312	2	633.249471	1264.48439	0.47395	0.00030013	-0.53398	-0.00033814	-0.060035	-3.8017E-05	633.2490004019726	46.478	0.56616	46.478	46.242	46.809	0					31	12	4	0	0	0	0.059072	1	3282	3282		128.6	46.362	1	893290			53091	7771	43906	43943	57760	57760					-0.13727350468479926
SHIFATKDY	9	Unmodified	_SHIFATKDY_					0	0	0			REV__tr|A0A7D6ZUR3|A0A7D6ZUR3_9CLOTCardiolipinsynthaseOS=ClostridiumintestinaleOX=36845GN=clsPE=3SV=1	REV__tr|A0A7D6ZUR3|A0A7D6ZUR3_9CLOTCardiolipinsynthaseOS=ClostridiumintestinaleOX=36845GN=clsPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	541.2687377929688	2	541.269281	1080.52401	0.69472	0.00037603	-1.4174	-0.0007672	-0.72269	-0.00039117	541.2683492450266	29.354	0.80478	26.645	26.456	27.261	-2.7097					35	16	3	0	0	0	0.6653	1	709	709		24.203	1.6231	1	87818	+		53092	32228	43907	43944	57761	57761					-0.013031339364488304
SHIYQRWKDL	10	Unmodified	_SHIYQRWKDL_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	MULTI-SECPEP	OvCa99_classI_Rep5	1	449.75335693359375	3	449.238566	1344.69387	0.08773	3.9411E-05	-4.32	-0.0019407	-4.2323	-0.0019013	449.236389671475	39.058	0.40547	39.058	38.836	39.242	0					16	8	3	0	0	0	0.027187	1	2285	2285		19.263	5.7547	1	49072			53093	7677	43908	43945	57762	57762					0.03530982065990429
SHKEKLVK	8	Unmodified	_SHKEKLVK_					0	0	0		ZNF569|p.I230V|1|0.18|ENSG00000196437|chr19:37413970-37413970|T/C|missense_variant	ZNF569|p.I230V|1|0.18|ENSG00000196437|chr19:37413970-37413970|T/C|missense_variant	ZNF569|p.I230V|1|0.18|ENSG00000196437|chr19:37413970-37413970|T/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	483.8263854980469	2	484.798009	967.581465	-1.2259	-0.00059431	1.2389	0.00060063	0.013023	6.3136E-06	484.798397429534	77.478	0.66335	75.126	74.786	75.449	-2.3527					22	12	2	0	0	0	0.028476	1	4045	4045		45.952	0	1	61457			53094	36325	43909	43946	57763	57763					0.09637753059814713
SHKGGGVVLLL	11	Unmodified	_SHKGGGVVLLL_					0	0	0			REV__ENST00000604516.1_1_6:79943924-79944071:+|nuORF	REV__ENST00000604516.1_1_6:79943924-79944071:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3306884765625	2	540.332216	1078.64988	-1.5762	-0.00085169	-2.2598	-0.001221	-3.836	-0.0020727	540.3309156564876	138.68	4.2384	138.45	137.13	141.37	-0.22697					227	86	3	0	0	0	0.72459	1	13914	13914		20.947	1.587	1	66382	+		53095	28059	43910	43947	57764	57764					0.11369997639690155
SHKKLSMLITE	11	Unmodified	_SHKKLSMLITE_					0	0	0		L1MB3_dup1513|chr1:246270299-246273131:-|1.1805691521590191|0.3959605958472513|1.58|429.0|47|2|sense	L1MB3_dup1513|chr1:246270299-246273131:-|1.1805691521590191|0.3959605958472513|1.58|429.0|47|2|sense	L1MB3_dup1513|chr1:246270299-246273131:-|1.1805691521590191|0.3959605958472513|1.58|429.0|47|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	430.21759033203125	3	429.576079	1285.70641	-0.64309	-0.00027626	2.4833	0.0010668	1.8402	0.0007905	429.57718543801514	44.268	0.84761	44.268	44.038	44.886	0					38	18	3	0	0	0	0.025943	1	2960	2960		29.245	22.226	1	510250			53096	14597	43911	43948	57765	57765					0.07498257413999454
SHKKTRPRL	9	Unmodified	_SHKKTRPRL_					0	0	0		nc|ENSG00000015153|Q8IY57-3|YAF2;ENST00000547622.5_1_12:42554393-42631252:-|nuORF;ENST00000552109.5_1_12:42554393-42631425:-|nuORF;ENSG00000015153|ENST00000534854|YAF2;nc|ENSG00000015153|Q8IY57-5|YAF2	nc|ENSG00000015153|Q8IY57-3|YAF2	nc|ENSG00000015153|Q8IY57-3|YAF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.8450317382812	2	561.846356	1121.67816	-2.5142	-0.0014126	1.3558	0.00076176	-1.1584	-0.00065086	561.8469845001015	152.99	1.31	151.56	151.24	152.55	-1.4351					96	32	4	0	0	0	0.7044	1	15195	15195		16.473	0.83134	1	225430			53097	1001	43912	43949	57766	57766					0.12218740339608303
SHKWKKKPSI	10	Unmodified	_SHKWKKKPSI_					0	0	0		ENST00000294889.5_1_1:220871865-220872123:+|nuORF	ENST00000294889.5_1_1:220871865-220872123:+|nuORF	ENST00000294889.5_1_1:220871865-220872123:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	619.869140625	2	619.87204	1237.72953	-3.1788	-0.0019704	-0.96478	-0.00059804	-4.1435	-0.0025685	619.8711859647292	147.21	3.9856	146.98	144.83	148.82	-0.22696					207	79	4	0	0	0	0.65434	1	14859	14859		35.618	2.8059	1	163200			53098	10119	43913	43950	57767	57767					0.12017064313681658
SHKYVPRAILV	11	Unmodified	_SHKYVPRAILV_					0	0	0		ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8816528320312	2	641.885147	1281.75574	-4.6434	-0.0029805	0.6524	0.00041876	-3.991	-0.0025618	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.72064	1	15634	15634		22.58	5.1116	1	543390			53099	9485	43914	43951	57768	57768					0.12613333485114708
SHLCGRQKADT	11	Unmodified	_SHLCGRQKADT_					0	0	0		nc|ENSG00000130783|Q6P9F0-2|CCDC62	nc|ENSG00000130783|Q6P9F0-2|CCDC62	nc|ENSG00000130783|Q6P9F0-2|CCDC62	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.2569580078125	3	405.868144	1214.5826	0.72655	0.00029488	-3.6147	-0.0014671	-2.8882	-0.0011722	405.8665123638867	66.353	0.75717	66.353	66.059	66.816	0					37	18	3	0	0	0	0.025861	1	6108	6108		11.455	1.8085	1	913050			53100	15013	43915	43952	57769	57769					-0.016104006336036036
SHLETYRRPE	10	Unmodified	_SHLETYRRPE_					0	0	0		ENSG00000176340|ENST00000314133|COX8A	ENSG00000176340|ENST00000314133|COX8A	ENSG00000176340|ENST00000314133|COX8A	MULTI-MSMS	OvCa99_classI_Rep5	1	429.8862609863281	3	429.886192	1286.63675	-0.47269	-0.0002032	0.34638	0.00014891	-0.12631	-5.4298E-05	429.88629145658473	35.124	0.51986	35.124	34.864	35.384	0					24	10	3	0	0	0	0.50873	1	1747	1747		53.089	17.911	1	583280			53101	7599	43916	43953	57770	57770					0.0048951478959224914
SHLIIAPFS	9	Unmodified	_SHLIIAPFS_					0	0	0			REV__ENST00000464184.5_1_X:129473893-129492795:+|nuORF	REV__ENST00000464184.5_1_X:129473893-129492795:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.7225341796875	2	492.779285	983.544017	-1.0168	-0.00050104	-4.2524	-0.0020955	-5.2692	-0.0025965	492.77687552503136	49.882	0.95838	49.882	49.418	50.376	0					37	21	3	0	0	0	0.027462	1	3820	3820		30.504	7.4612	1	1140900	+		53102	26143	43917	43954	57771	57771					0.051586617941893564
SHLKCSPLCP	10	Unmodified	_SHLKCSPLCP_					0	0	0		ENSG00000086544|ENST00000263370|ITPKC;ITPKC|p.K393*|1|0.26|ENSG00000086544|chr19:40725360-40725361|-/T|frameshift_variant	ENSG00000086544|ENST00000263370|ITPKC	ENSG00000086544|ENST00000263370|ITPKC	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.805908203125	2	542.767537	1083.52052	-0.20463	-0.00011107	3.2116	0.0017432	3.007	0.0016321	542.7691526347132	78.162	2.3449	75.81	75.402	77.746	-2.3527					85	46	4	0	0	0	0.026802	1	4329	4329		34.173	1.422	1	374540			53103	1751	43918	43955	57772	57772					-0.01789843306301009
SHLLAIILL	9	Unmodified	_SHLLAIILL_					0	0	0		ENST00000594643.1_1_19:48893647-48894615:-|nuORF;ENST00000599084.1_1_19:48892794-48894615:-|nuORF;ENSG00000105438|ENST00000330720|KDELR1	ENST00000594643.1_1_19:48893647-48894615:-|nuORF	ENST00000594643.1_1_19:48893647-48894615:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	496.83013916015625	2	496.828778	991.643003	1.6069	0.00079835	0.2617	0.00013002	1.8686	0.00092837	496.82874976340844	126.52	1.0483	126.52	126.18	127.23	0					56	22	3	0	0	0	0.42057	1	14667	14667		50.025	0	1	432270			53104	2460	43919	43956	57773	57773					0.14684684759083666
SHLLEKILD	9	Unmodified	_SHLLEKILD_					0	0	0			REV__L1PA7_dup282|chr1:88818677-88820142:+|1.0289078366989055|0.4624574098713206|1.15|428.0|25|2|sense	REV__L1PA7_dup282|chr1:88818677-88820142:+|1.0289078366989055|0.4624574098713206|1.15|428.0|25|2|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.8095092773438	2	534.308406	1066.60226	-0.89432	-0.00047784	3.8273	0.0020449	2.933	0.0015671	534.3102105105895	96.362	1.0676	93.937	93.254	94.322	-2.4256					39	20	3	0	0	0	0.027403	1	8484	8484		69.628	8.6557	1	310980	+		53105	28540	43920	43957	57774	57774					0.07162298648813703
SHLLIPKF	8	Unmodified	_SHLLIPKF_					0	0	0			REV__ENST00000435041.2_1_6:90037389-90037533:-|nuORF	REV__ENST00000435041.2_1_6:90037389-90037533:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.7673645019531	2	477.792195	953.569838	-0.77317	-0.00036942	-3.5281	-0.0016857	-4.3013	-0.0020551	477.7902143131445	45.575	0.57582	42.537	42.334	42.909	-3.0385					17	10	2	0	0	0	0.028476	1	2332	2332		24.203	4.8428	1	44884	+		53106	25766	43921	43958	57775	57775					0.09119556036466747
SHLLQWLL	8	Unmodified	_SHLLQWLL_					0	0	0		ENSG00000168878|ENST00000519937|SFTPB	ENSG00000168878|ENST00000519937|SFTPB	ENSG00000168878|ENST00000519937|SFTPB	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.83270263671875	2	505.295102	1008.57565	1.3359	0.00067502	0.57067	0.00028836	1.9066	0.00096338	505.29519737011844	111.72	0.73367	111.72	111.42	112.16	0					26	15	2	0	0	0	0.028476	1	12686	12686		68.485	13.59	1	382580			53107	6948	43922	43959	57776	57776					0.07170654548144739
SHLLRFGIA	9	Unmodified	_SHLLRFGIA_					0	0	0			REV__nc|ENSG00000215117|Q9Y4M8|LINC00588	REV__nc|ENSG00000215117|Q9Y4M8|LINC00588	MULTI-MSMS	OvCa9_classI_Rep2	2	508.30419921875	2	507.298176	1012.5818	0.22454	0.00011391	-1.038	-0.00052659	-0.81349	-0.00041268	507.2956796701824	30.801	1.0836	28.091	27.656	28.74	-2.7097					58	21	5	0	0	0	0.63422	1	870	870		27.882	1.1893	1	97785	+		53108	29131	43923	43960	57777	57777					0.07601172779652643
SHLLTGPL	8	Unmodified	_SHLLTGPL_					0	0	0		ENST00000397981.7_1_19:7977316-7977859:+|nuORF	ENST00000397981.7_1_19:7977316-7977859:+|nuORF	ENST00000397981.7_1_19:7977316-7977859:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	420.23486328125	2	419.245078	836.475603	1.685	0.00070645	-1.4381	-0.0006029	0.24697	0.00010354	419.2442938705317	90.984	0.78791	89.749	89.538	90.326	-1.2355					20	14	2	0	0	0	0.028476	1	8098	8098		26.796	2.5934	1	14238			53109	11359	43924	43961	57778	57778					0.050824172143165924
SHLLTGPL	8	Unmodified	_SHLLTGPL_					0	0	0		ENST00000397981.7_1_19:7977316-7977859:+|nuORF	ENST00000397981.7_1_19:7977316-7977859:+|nuORF	ENST00000397981.7_1_19:7977316-7977859:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	419.245078	836.475603	3.3648	0.0014107	-1.2528	-0.00052523	2.112	0.00088543	419.24450957366497	89.66	0.24635	89.66	89.476	89.722	0	-0.042291	-0.0010002	NaN	26.796	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119750			53110	11359	43924	43961							0.050824172143165924
SHLLTGPL	8	Unmodified	_SHLLTGPL_					0	0	0		ENST00000397981.7_1_19:7977316-7977859:+|nuORF	ENST00000397981.7_1_19:7977316-7977859:+|nuORF	ENST00000397981.7_1_19:7977316-7977859:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	419.245078	836.475603	-0.27883	-0.0001169	0.69315	0.0002906	0.41431	0.0001737	419.2451765415197	91.696	0.60966	89.672	89.382	89.992	-2.0241	-0.030517	0.00063149	NaN	26.796	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24924			53111	11359	43924	43961							0.050824172143165924
SHLPREVSP	9	Unmodified	_SHLPREVSP_					0	0	0		ENSG00000143674|ENST00000366624|MAP3K21;nc|ENSG00000143674|Q5TCX8-3|MAP3K21	ENSG00000143674|ENST00000366624|MAP3K21	ENSG00000143674|ENST00000366624|MAP3K21	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.3127136230469	2	511.274898	1020.53524	-1.0707	-0.00054743	-0.76511	-0.00039118	-1.8358	-0.00093861	511.77758083044716	54.14	0.35892	50.892	50.671	51.03	-3.2474					9	6	2	0	0	0	0.027462	1	3349	3349		20.947	0	1	9114.4			53112	5085	43925	43962	57779	57779					0.0257968815770937
SHLQAQLLRSL	11	Unmodified	_SHLQAQLLRSL_					0	0	0			REV__ENST00000397527.5_2_20:34043234-34046179:+|nuORF	REV__ENST00000397527.5_2_20:34043234-34046179:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3693237304688	2	633.369861	1264.72517	-4.5141	-0.0028591	3.4388	0.002178	-1.0753	-0.00068108	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.72479	1	15741	15741		18.262	3.3972	1	369460	+		53113	25357	43926	43963	57780	57780					0.1033955510006308
SHLQVVPSE	9	Unmodified	_SHLQVVPSE_					0	0	0			REV__nc|ENSG00000134352|P40189-2|IL6ST	REV__nc|ENSG00000134352|P40189-2|IL6ST	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.7879333496094	2	498.261456	994.50836	-0.59519	-0.00029656	-0.53956	-0.00026884	-1.1348	-0.0005654	498.2610034899731	43.351	0.50808	43.351	43.143	43.651	0					15	11	2	0	0	0	0.027462	1	2836	2836		27.882	3.6795	1	64432	+		53114	19199	43927	43964	57781	57781					0.010885795465242154
SHLSFLHQL	9	Unmodified	_SHLSFLHQL_					0	0	0			REV__ENST00000543837.5_1_7:116829413-116831724:+|nuORF	REV__ENST00000543837.5_1_7:116829413-116831724:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	541.2901611328125	2	541.293091	1080.57163	-0.72211	-0.00039087	-3.0506	-0.0016513	-3.7727	-0.0020421	541.2912521139278	26.01	0.44922	26.01	25.843	26.292	0					16	8	3	0	0	0	0.48324	1	638	638		44.117	0	1	143990	+		53115	27393	43928	43965	57782	57782					0.03456565054420935
SHLSFLHQL	9	Unmodified	_SHLSFLHQL_					0	0	0			REV__ENST00000543837.5_1_7:116829413-116831724:+|nuORF	REV__ENST00000543837.5_1_7:116829413-116831724:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	541.293091	1080.57163	-0.72211	-0.00039087	-3.0506	-0.0016513	-3.7727	-0.0020421	541.2912521139278	26.01	0.44922	26.01	25.843	26.292	0	0	0	NaN	44.117	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143990	+		53116	27393	43928	43965							0.03456565054420935
SHLVIISITT	10	Unmodified	_SHLVIISITT_					0	0	0		ENSG00000018236|ENST00000551295|CNTN1;nc|ENSG00000018236|Q12860-2|CNTN1;nc|ENSG00000018236|Q12860-3|CNTN1	ENSG00000018236|ENST00000551295|CNTN1	ENSG00000018236|ENST00000551295|CNTN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.3357543945312	2	542.324057	1082.63356	0.34607	0.00018768	-2.8939	-0.0015694	-2.5478	-0.0013817	542.3222482133407	36.617	0.84684	33.724	33.546	34.392	-2.8925					25	16	3	0	0	0	0.027088	1	1304	1304		19.997	0	1	42444			53117	1011	43929	43966	57783	57783					0.09554871682894372
SHLVIISITT	10	Unmodified	_SHLVIISITT_					0	0	0		ENSG00000018236|ENST00000551295|CNTN1;nc|ENSG00000018236|Q12860-2|CNTN1;nc|ENSG00000018236|Q12860-3|CNTN1	ENSG00000018236|ENST00000551295|CNTN1	ENSG00000018236|ENST00000551295|CNTN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.324057	1082.63356	-3.2884	-0.0017834	1.001	0.00054284	-2.2875	-0.0012405	542.3244175787136	36.757	0.39424	34.047	33.795	34.189	-2.7097	0.16162	0.0032886	NaN	26.693	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7480.5			53118	1011	43929	43966							0.09554871682894372
SHLYFWTL	8	Unmodified	_SHLYFWTL_					0	0	0		ENSG00000066629|ENST00000262233|EML1;nc|ENSG00000066629|O00423-3|EML1	ENSG00000066629|ENST00000262233|EML1	ENSG00000066629|ENST00000262233|EML1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.7845458984375	2	533.77146	1065.52837	-1.3693	-0.00073088	-2.7209	-0.0014524	-4.0902	-0.0021832	533.7700572913801	79.645	1.1085	76.893	76.466	77.575	-2.7514					34	22	2	0	0	0	0.028476	1	6512	6512		12.959	0	1	76381			53119	1355	43930	43967	57784	57784					-0.0017762472284630348
SHMPSSAH	8	Unmodified	_SHMPSSAH_					0	0	0			REV__ENSG00000180176|ENST00000352909|TH	REV__ENSG00000180176|ENST00000352909|TH	MULTI-MSMS	OvCa99_classI_Rep5	1	427.1847229003906	2	427.184694	852.354836	-0.08347	-3.5657E-05	0.25578	0.00010927	0.17231	7.361E-05	427.18473763833555	23.102	3.4531	23.102	22.789	26.242	0					126	69	4	0	0	0	0.75241	1	271	271		25.45	0	1	216520	+		53120	22160	43931	43968	57785	57785					-0.07724733770783132
SHNDVPEEN	9	Unmodified	_SHNDVPEEN_					0	0	0		ENSG00000216937|ENST00000639629|CCDC7	ENSG00000216937|ENST00000639629|CCDC7	ENSG00000216937|ENST00000639629|CCDC7	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.7785034179688	2	520.71761	1039.42067	0.85625	0.00044586	-3.3405	-0.0017394	-2.4842	-0.0012936	521.2153839457304	112.47	0.49371	112.35	111.93	112.43	-0.12174					11	9	2	0	0	0	0.027462	1	10638	10638		47.96	14.444	1	10381			53121	9215	43932	43969	57786	57786					-0.09746666114892832
SHPALLALL	9	Unmodified	_SHPALLALL_					0	0	0		ENST00000465521.1_1_2:74758074-74758257:+|nuORF;ENST00000484352.5_1_2:74758074-74758502:+|nuORF;ENST00000258080.7_1_2:74758074-74758736:+|nuORF	ENST00000465521.1_1_2:74758074-74758257:+|nuORF	ENST00000465521.1_1_2:74758074-74758257:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.7895202636719	2	467.789653	933.564752	0.83084	0.00038866	-1.1924	-0.00055778	-0.36153	-0.00016912	467.78901113954316	114	1.1829	112.55	112.34	113.52	-1.4461					42	22	3	0	0	0	0.55588	1	10596	10596		37.159	3.6435	1	136330			53122	9835	43933	43970	57787	57787					0.09531252173849225
SHPALLALL	9	Unmodified	_SHPALLALL_					0	0	0		ENST00000465521.1_1_2:74758074-74758257:+|nuORF;ENST00000484352.5_1_2:74758074-74758502:+|nuORF;ENST00000258080.7_1_2:74758074-74758736:+|nuORF	ENST00000465521.1_1_2:74758074-74758257:+|nuORF	ENST00000465521.1_1_2:74758074-74758257:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	467.789653	933.564752	0.57157	0.00026737	-0.70592	-0.00033022	-0.13435	-6.2849E-05	467.7892067558539	112.67	0.88721	112.55	112.28	113.17	-0.12174	-0.013571	0.00032289	NaN	37.159	40	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120760			53123	9835	43933	43970							0.09531252173849225
SHPALLALL	9	Unmodified	_SHPALLALL_					0	0	0		ENST00000465521.1_1_2:74758074-74758257:+|nuORF;ENST00000484352.5_1_2:74758074-74758502:+|nuORF;ENST00000258080.7_1_2:74758074-74758736:+|nuORF	ENST00000465521.1_1_2:74758074-74758257:+|nuORF	ENST00000465521.1_1_2:74758074-74758257:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	467.789653	933.564752	0.86324	0.00040381	-1.3856	-0.00064816	-0.52235	-0.00024435	467.788898835856	113.66	1.1838	112.59	112.25	113.43	-1.0753	0.022546	-0.00031299	NaN	37.159	44	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142610			53124	9835	43933	43970							0.09531252173849225
SHPLPVARTR	10	Unmodified	_SHPLPVARTR_					0	0	0		ENST00000262113.8_1_8:2026969-2037879:+|nuORF	ENST00000262113.8_1_8:2026969-2037879:+|nuORF	ENST00000262113.8_1_8:2026969-2037879:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3297119140625	2	567.330539	1132.64652	-2.3399	-0.0013275	0.99796	0.00056617	-1.3419	-0.00076131	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.79917	1	14661	14661		19.104	0	1	241060			53125	9881	43934	43971	57788	57788					0.08550747585650242
SHPNKVKVY	9	Unmodified	_SHPNKVKVY_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.H2029Qfs*32|1|0.9|ENSG00000196924|chrX:154353130-154353140|TGCTGGCCACG/-|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OvCa99_classI_Rep5	1	536.3007202148438	2	536.300916	1070.58728	0.066538	3.5685E-05	-0.57624	-0.00030904	-0.5097	-0.00027335	536.3006097905759	31.194	2.4609	31.194	30.383	32.844	0					102	49	5	0	0	0	0.059253	2	1271	1248;1271		113.41	52.44	1	4249400			53126	8659	43935	43972	57789;57790	57790					0.05480851571473977
SHPRRHHREWK	11	Unmodified	_SHPRRHHREWK_					0	0	0		chr16:2164001-2165884|94|15.38|0.09|7.35|+|2|TRAF7,None|1	chr16:2164001-2165884|94|15.38|0.09|7.35|+|2|TRAF7,None|1	chr16:2164001-2165884|94|15.38|0.09|7.35|+|2|TRAF7,None|1	MULTI-MSMS	OvCa9_classI_Rep3	3	509.271728515625	3	509.271375	1524.79229	0.77642	0.00039541	-0.325	-0.00016551	0.45142	0.0002299	509.2711434456893	66.676	1.6117	63.788	63.477	65.089	-2.8873					96	31	5	0	0	0	0.72458	1	2771	2771		21.032	1.7696	1	276460			53127	370	43936	43973	57791	57791					0.050890231544144626
SHQKGKPVPR	10	Unmodified	_SHQKGKPVPR_					0	0	0		ENSG00000188641|ENST00000370192|DPYD	ENSG00000188641|ENST00000370192|DPYD	ENSG00000188641|ENST00000370192|DPYD	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3304443359375	2	567.330539	1132.64652	-3.474	-0.0019709	2.1482	0.0012187	-1.3258	-0.00075219	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.72319	1	12234	12234		27.882	0	1	458690			53128	8486	43937	43974	57792	57792					0.0855074758567298
SHQLRVLS	8	Unmodified	_SHQLRVLS_					0	0	0		ENST00000442011.6_1_5:135369517-135379779:+|nuORF	ENST00000442011.6_1_5:135369517-135379779:+|nuORF	ENST00000442011.6_1_5:135369517-135379779:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	470.27215576171875	2	470.272158	938.529764	-3.0901	-0.0014532	3.1911	0.0015007	0.10101	4.7502E-05	470.2736065998923	146.16	1.8917	145.2	144.4	146.29	-0.95947					80	37	4	0	0	0	0.75915	1	12248	12248		20.482	1.1219	1	264540			53129	11936	43938	43975	57793	57793					0.05804009365908769
SHRGYLLEL	9	Unmodified	_SHRGYLLEL_					0	0	0		ENSG00000051341|ENST00000264233|POLQ	ENSG00000051341|ENST00000264233|POLQ	ENSG00000051341|ENST00000264233|POLQ	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.299560546875	2	544.298373	1086.58219	-1.2125	-0.00065995	4.2489	0.0023127	3.0364	0.0016527	544.3005382052795	93.345	0.9722	90.838	90.513	91.485	-2.5072					59	20	4	0	0	0	0.22961	1	8177	8177		71.296	7.0884	1	699340			53130	1186	43939	43976	57794	57794					0.04236547708865146
SHRLCILRQ	9	Unmodified	_SHRLCILRQ_					0	0	0		ENST00000504745.1_1_4:113347516-113362363:+|nuORF;nc|ENSG00000073331|Q96QP1-2|ALPK1;ENSG00000073331|ENST00000650871|ALPK1	ENST00000504745.1_1_4:113347516-113362363:+|nuORF	ENST00000504745.1_1_4:113347516-113362363:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.2664794921875	2	563.319117	1124.62368	2.1015	0.0011838	-4.2038	-0.0023681	-2.1023	-0.0011843	563.3167441344199	90.719	0.35278	90.719	90.504	90.857	0					12	8	2	0	0	0	0.027462	1	9709	9709		47.657	0	1	325270			53131	1491	43940	43977	57795	57795					0.06635405196516331
SHRLLSLLL	9	Unmodified	_SHRLLSLLL_					0	0	0			REV__STK36|p.E760Sfs*19|1|0.2|ENSG00000163482|chr2:218693919-218693934|TCTACTGAAGTGACAC/-|frameshift_variant	REV__STK36|p.E760Sfs*19|1|0.2|ENSG00000163482|chr2:218693919-218693934|TCTACTGAAGTGACAC/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.7632446289062	2	526.334759	1050.65496	-0.37488	-0.00019731	0.93523	0.00049224	0.56035	0.00029493	526.3347925449285	123.02	1.2885	121.66	121.01	122.3	-1.3666					35	25	2	0	0	0	0.027462	1	11557	11557		17.468	1.8262	1	40394	+		53132	20841	43941	43978	57796	57796					0.13166301502269562
SHRLLSLLL	9	Unmodified	_SHRLLSLLL_					0	0	0			REV__STK36|p.E760Sfs*19|1|0.2|ENSG00000163482|chr2:218693919-218693934|TCTACTGAAGTGACAC/-|frameshift_variant	REV__STK36|p.E760Sfs*19|1|0.2|ENSG00000163482|chr2:218693919-218693934|TCTACTGAAGTGACAC/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	526.334759	1050.65496	-0.83027	-0.000437	2.6922	0.001417	1.8619	0.00097997	526.3348862072307	121.57	0.84132	121.37	121.1	121.94	-0.19718	-0.19273	0.0019996	NaN	17.468	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42869	+		53133	20841	43941	43978							0.13166301502269562
SHRLLSLLL	9	Unmodified	_SHRLLSLLL_					0	0	0			REV__STK36|p.E760Sfs*19|1|0.2|ENSG00000163482|chr2:218693919-218693934|TCTACTGAAGTGACAC/-|frameshift_variant	REV__STK36|p.E760Sfs*19|1|0.2|ENSG00000163482|chr2:218693919-218693934|TCTACTGAAGTGACAC/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	526.334759	1050.65496	0.74762	0.0003935	-0.15261	-8.0322E-05	0.59501	0.00031317	526.8365499303546	122.69	1.2522	121.66	121.32	122.57	-1.0286	0.098042	-0.00099503	NaN	17.468	34	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51399	+		53134	20841	43941	43978							0.13166301502269562
SHRLRLYE	8	Unmodified	_SHRLRLYE_					0	0	0		ENSG00000163254|ENST00000282141|CRYGC	ENSG00000163254|ENST00000282141|CRYGC	ENSG00000163254|ENST00000282141|CRYGC	MULTI-MSMS	OvCa9_classI_Rep2	2	537.2944946289062	2	537.296165	1072.57778	-1.8238	-0.00097994	0.69145	0.00037151	-1.1324	-0.00060843	537.2965706710853	60.933	2.3725	58.163	57.501	59.873	-2.7702					136	45	4	0	0	0	0.64026	1	4503	4503		55.504	0	1	2338900			53135	6282	43942	43979	57797	57797					0.044390832859335205
SHRPAVGL	8	Unmodified	_SHRPAVGL_					0	0	0		ENST00000445416.5_1_X:100740468-100742246:+|nuORF;ENST00000452188.5_1_X:100740468-100742246:+|nuORF;ENST00000455331.5_1_X:100740450-100742246:+|nuORF	ENST00000445416.5_1_X:100740468-100742246:+|nuORF	ENST00000445416.5_1_X:100740468-100742246:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	417.9168701171875	2	418.740494	835.466435	0.50709	0.00021234	-0.31047	-0.00013001	0.19661	8.233E-05	418.74008820037113	32.525	0.78403	32.525	32.303	33.087	0					21	15	2	0	0	0	0.028476	1	1412	1412		26.796	0	1	46672			53136	11979	43943	43980	57798	57798					0.042120686486555314
SHRPCQLNL	9	Unmodified	_SHRPCQLNL_					0	0	0			REV__ENST00000464037.5_1_21:33825516-33887497:+|nuORF	REV__ENST00000464037.5_1_21:33825516-33887497:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.848876953125	2	534.274375	1066.5342	2.6045	0.0013915	-2.155	-0.0011514	0.44953	0.00024017	534.271594458545	75.174	0.24624	75.174	75.005	75.251	0					10	5	2	0	0	0	0.027462	1	7462	7462		23.042	0	1	128050	+		53137	21244	43944	43981	57799	57799					0.003591505171470999
SHRRRRRRRRR	11	Unmodified	_SHRRRRRRRRR_					0	0	0			REV__ENST00000356978.8_1_14:90863393-90866410:+|nuORF	REV__ENST00000356978.8_1_14:90863393-90866410:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.7854614257812	3	550.011111	1647.0115	1.3474	0.00074109	-0.21935	-0.00012064	1.1281	0.00062045	550.3453792181192	83.048	0.5543	83.048	82.781	83.335	0					20	12	2	0	0	0	0.026497	1	8626	8626		1.3219	0.089996	1	287200	+		53138	24774	43945	43982	57800	57800					0.2138789195626032
SHRTRLTSVLL	11	Unmodified	_SHRTRLTSVLL_					0	0	0		ENST00000358234.4_1_19:49835051-49843492:-|nuORF	ENST00000358234.4_1_19:49835051-49843492:-|nuORF	ENST00000358234.4_1_19:49835051-49843492:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8805541992188	2	641.883136	1281.75172	-2.5182	-0.0016164	1.1749	0.00075413	-1.3433	-0.00086223	641.8839546837315	150.47	2.9704	149.03	147.78	150.75	-1.4344					235	64	4	0	0	0	0.70761	1	14990	14990		27.047	1.4733	1	344900			53139	10731	43946	43983	57801	57801					0.12211243991396259
SHSCPPCQAPK	11	Unmodified	_SHSCPPCQAPK_					0	0	0			REV__ENST00000218388.8_1_X:47446109-47446166:+|nuORF	REV__ENST00000218388.8_1_X:47446109-47446166:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.8126220703125	2	577.757701	1153.50085	-0.76554	-0.00044229	0.34136	0.00019722	-0.42418	-0.00024507	577.7571410353783	61.353	0.63227	61.353	61.071	61.704	0					43	14	4	0	0	0	0.025257	1	5372	5372		44.377	25.274	1	2122500	+		53140	23732	43947	43984	57802	57802					-0.06976219317084542
SHSIPQPLEY	10	Unmodified	_SHSIPQPLEY_					0	0	0			REV__ENSG00000186334|ENST00000335230|SLC36A3	REV__ENSG00000186334|ENST00000335230|SLC36A3	MULTI-SECPEP	OvCa9_classI_Rep2	2	586.3675537109375	2	585.793121	1169.57169	0.17458	0.00010227	0.28482	0.00016685	0.4594	0.00026911	585.7929503522081	92.578	1.2376	91.41	90.971	92.209	-1.168					54	23	4	0	0	0	0.026659	1	8237	8237		45.972	12.051	1	105080	+		53141	22576	43948	43985	57803	57803					-0.00631479736239271
SHSKNMQKRL	10	Unmodified	_SHSKNMQKRL_					0	0	0		ENST00000446495.1_1_X:115826922-115828007:-|nuORF	ENST00000446495.1_1_X:115826922-115828007:-|nuORF	ENST00000446495.1_1_X:115826922-115828007:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	410.22314453125	3	410.224151	1227.65062	0.42411	0.00017398	-3.3029	-0.0013549	-2.8788	-0.001181	410.2227464334715	39.659	0.50616	39.659	39.42	39.926	0					23	11	3	0	0	0	0.55109	1	2354	2354		47.96	10.148	1	696310			53142	11994	43949	43986	57804	57804					0.04590469017080068
SHSKTHLRVI	10	Unmodified	_SHSKTHLRVI_					0	0	0		ENSG00000100557|ENST00000216445|CCDC198	ENSG00000100557|ENST00000216445|CCDC198	ENSG00000100557|ENST00000216445|CCDC198	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3429565429688	2	589.343646	1176.67274	-5.1334	-0.0030254	3.8974	0.0022969	-1.236	-0.00072842	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.76627	1	12389	12389		23.042	2.0956	1	589610			53143	2083	43950	43987	57805	57805					0.09147016757151505
SHSPASFPR	9	Unmodified	_SHSPASFPR_					0	0	0		ERC1-CACNA1C|23|fusion;ERC1-CACNA1C|37|fusion;ERC1-CACNA1C|9|fusion;ERC1-CACNA1C|18|fusion;ERC1-CACNA1C|11|fusion;ERC1-CACNA1C|17|fusion;ERC1-CACNA1C|14|fusion;ERC1-CACNA1C|35|fusion;ERC1-CACNA1C|33|fusion;ERC1-CACNA1C|39|fusion;ERC1-CACNA1C|25|fusion;ERC1-CACNA1C|5|fusion;ERC1-CACNA1C|43|fusion;ERC1-CACNA1C|38|fusion;ERC1-CACNA1C|44|fusion;ERC1-CACNA1C|45|fusion;ERC1-CACNA1C|31|fusion;ERC1-CACNA1C|32|fusion;ERC1-CACNA1C|40|fusion;ERC1-CACNA1C|30|fusion;ERC1-CACNA1C|34|fusion;ERC1-CACNA1C|36|fusion;ERC1-CACNA1C|41|fusion;ERC1-CACNA1C|8|fusion;ERC1-CACNA1C|22|fusion;ERC1-CACNA1C|19|fusion;ERC1-CACNA1C|46|fusion;ERC1-CACNA1C|6|fusion;ERC1-CACNA1C|3|fusion;ERC1-CACNA1C|1|fusion;ERC1-CACNA1C|4|fusion;ERC1-CACNA1C|42|fusion;ERC1-CACNA1C|13|fusion;ERC1-CACNA1C|29|fusion;ERC1-CACNA1C|12|fusion;ERC1-CACNA1C|2|fusion;ERC1-CACNA1C|10|fusion;ERC1-CACNA1C|16|fusion;ERC1-CACNA1C|20|fusion;ERC1-CACNA1C|26|fusion;ERC1-CACNA1C|21|fusion;ERC1-CACNA1C|15|fusion;ERC1-CACNA1C|24|fusion;ERC1-CACNA1C|27|fusion;ERC1-CACNA1C|7|fusion;ERC1-CACNA1C|28|fusion;nc|ENSG00000151067|Q13936-32|CACNA1C;nc|ENSG00000151067|Q13936-30|CACNA1C;nc|ENSG00000151067|Q13936-13|CACNA1C;nc|ENSG00000151067|Q13936-25|CACNA1C;nc|ENSG00000151067|Q13936-2|CACNA1C;nc|ENSG00000151067|Q13936-29|CACNA1C;nc|ENSG00000151067|Q13936-16|CACNA1C;nc|ENSG00000151067|Q13936-15|CACNA1C;nc|ENSG00000151067|Q13936-37|CACNA1C;nc|ENSG00000151067|Q13936-20|CACNA1C;nc|ENSG00000151067|Q13936-23|CACNA1C;nc|ENSG00000151067|Q13936-22|CACNA1C;nc|ENSG00000151067|Q13936-21|CACNA1C;ENSG00000151067|ENST00000399655|CACNA1C;nc|ENSG00000151067|Q13936-35|CACNA1C;nc|ENSG00000151067|Q13936-19|CACNA1C;nc|ENSG00000151067|Q13936-17|CACNA1C;nc|ENSG00000151067|Q13936-24|CACNA1C;nc|ENSG00000151067|Q13936-27|CACNA1C;nc|ENSG00000151067|Q13936-31|CACNA1C;nc|ENSG00000151067|Q13936-7|CACNA1C;nc|ENSG00000151067|Q13936-34|CACNA1C;nc|ENSG00000151067|Q13936-10|CACNA1C;nc|ENSG00000151067|Q13936|CACNA1C;nc|ENSG00000151067|Q13936-3|CACNA1C;nc|ENSG00000151067|Q13936-8|CACNA1C;nc|ENSG00000151067|Q13936-5|CACNA1C;nc|ENSG00000151067|Q13936-4|CACNA1C;nc|ENSG00000151067|Q13936-6|CACNA1C;nc|ENSG00000151067|Q13936-11|CACNA1C;nc|ENSG00000151067|Q13936-18|CACNA1C;nc|ENSG00000151067|Q13936-14|CACNA1C;nc|ENSG00000151067|Q13936-33|CACNA1C;nc|ENSG00000151067|Q13936-36|CACNA1C;nc|ENSG00000151067|Q13936-28|CACNA1C;nc|ENSG00000151067|Q13936-26|CACNA1C;nc|ENSG00000151067|Q13936-9|CACNA1C	ERC1-CACNA1C|23|fusion;nc|ENSG00000151067|Q13936-26|CACNA1C	ERC1-CACNA1C|23|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.78485107421875	2	493.246141	984.477728	-0.8055	-0.00039731	-2.1812	-0.0010759	-2.9867	-0.0014732	493.2447656435118	42.782	0.62883	39.774	39.486	40.115	-3.0074					18	11	2	0	0	0	0.027462	1	1994	1994		34.173	1.3601	1	25951			53144	14314;15092	43951	43988	57806	57806					-0.015131540478591887
SHSQDLGSP	9	Unmodified	_SHSQDLGSP_					0	0	0		ENST00000538013.5_1_11:67160139-67164890:+|nuORF;ENSG00000172613|ENST00000307980|RAD9A;ENST00000535644.1_1_11:67163166-67165027:+|nuORF	ENST00000538013.5_1_11:67160139-67164890:+|nuORF	ENST00000538013.5_1_11:67160139-67164890:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	464.21209716796875	2	464.211963	926.409374	-0.65626	-0.00030464	-1.9625	-0.00091101	-2.6187	-0.0012157	464.2108041191275	50.485	0.87537	50.485	50.245	51.12	0					52	19	4	0	0	0	0.42676	1	3823	3823		49.442	1.7842	1	3024900			53145	7308	43952	43989	57807	57807					-0.05677443418369421
SHSRPLTVL	9	Unmodified	_SHSRPLTVL_					0	0	0			REV__ENSG00000042781|ENST00000307340|USH2A	REV__ENSG00000042781|ENST00000307340|USH2A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.24188232421875	2	505.293091	1008.57163	-4.6288	-0.0023389	1.5919	0.00080438	-3.0369	-0.0015345	505.2935077810475	154.41	0.96838	152.96	152.38	153.35	-1.4517					42	25	3	0	0	0	0.027462	1	15243	15243		20.947	6.2828	1	28272	+		53146	16642	43953	43990	57808	57808					0.06768565054414921
SHSSIAPPTGF	11	Unmodified	_SHSSIAPPTGF_					0	0	0		ENSG00000114933|ENST00000403263|INO80D	ENSG00000114933|ENST00000403263|INO80D	ENSG00000114933|ENST00000403263|INO80D	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.3417358398438	2	550.772188	1099.52982	-0.82292	-0.00045324	1.5109	0.00083217	0.688	0.00037893	550.7728062412065	99.584	0.96904	97.259	96.847	97.816	-2.3253					36	18	3	0	0	0	0.025638	1	8904	8904		23.523	0	1	87785			53147	3050	43954	43991	57809	57809					-0.015960354247454234
SHSSKGETA	9	Unmodified	_SHSSKGETA_					0	0	0		ENSG00000155760|ENST00000286201|FZD7	ENSG00000155760|ENST00000286201|FZD7	ENSG00000155760|ENST00000286201|FZD7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	451.7523498535156	2	452.211963	902.409374	0.78327	0.00035421	1.4627	0.00066147	2.246	0.0010157	452.21205395506973	57.546	0.61163	54.201	53.934	54.546	-3.3449					20	11	3	0	0	0	0.027462	1	3749	3749		10.866	0	1	17617			53148	5800	43955	43992	57810	57810					-0.045734434183714257
SHSSPTQPS	9	Unmodified	_SHSSPTQPS_					0	0	0		ENST00000602591.1_1_6:30256497-30256647:-|nuORF	ENST00000602591.1_1_6:30256497-30256647:-|nuORF	ENST00000602591.1_1_6:30256497-30256647:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	464.2119140625	2	464.211963	926.409374	-0.65626	-0.00030464	-1.9625	-0.00091101	-2.6187	-0.0012157	464.2108041191275	50.485	0.87537	50.485	50.245	51.12	0					52	19	4	0	0	0	0.28934	1	3845	3845		64.207	9.431	1	3024900			53149	14243	43956	43993	57811	57811					-0.056774434183580524
SHSTGVSTLT	10	Unmodified	_SHSTGVSTLT_					0	0	0			REV__ENSG00000178177|ENST00000635767|LCORL	REV__ENSG00000178177|ENST00000635767|LCORL	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.24822998046875	2	495.248546	988.482539	-0.63667	-0.00031531	0.23687	0.00011731	-0.3998	-0.000198	495.24855946934025	124.08	1.1711	122.69	122.42	123.59	-1.3908					49	22	3	0	0	0	0.66721	1	11775	11775		34.173	2.2177	1	110610	+		53150	22047	43957	43994	57812	57812					-0.012163146957504978
SHSTSITPSI	10	Unmodified	_SHSTSITPSI_					0	0	0			REV__ENSG00000120279|ENST00000367245|MYCT1	REV__ENSG00000120279|ENST00000367245|MYCT1	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.2826538085938	2	515.264196	1028.51384	-0.2318	-0.00011944	0.73859	0.00038057	0.5068	0.00026113	515.2641852606379	105.56	0.29835	105.12	104.85	105.15	-0.43642					8	5	2	0	0	0	0.026802	1	9785	9785		19.997	0	1	14406	+		53151	18493	43958	43995	57813	57813					0.0007225833833217621
SHTRAAPL	8	Unmodified	_SHTRAAPL_					0	0	0			REV__ENST00000543714.5_1_11:73692668-73693858:-|nuORF	REV__ENST00000543714.5_1_11:73692668-73693858:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	425.7757568359375	2	426.737951	851.46135	-0.75625	-0.00032272	3.1935	0.0013628	2.4373	0.0010401	426.736940098493	71.963	0.19472	68.506	68.412	68.607	-3.4563					5	3	2	0	0	0	0.028476	1	5499	5499		11.511	4.7755	1	4302.4	+		53152	24343	43959	43996	57814	57814					0.029677647860353318
SHTSPHTSP	9	Unmodified	_SHTSPHTSP_					0	0	0			REV__ENST00000280800.4_1_12:113827935-113828904:+|nuORF	REV__ENST00000280800.4_1_12:113827935-113828904:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.32208251953125	2	475.719956	949.425358	1.2754	0.00060675	-0.32023	-0.00015234	0.9552	0.00045441	475.71895409905636	110.42	0.94685	108.82	108.54	109.49	-1.6011					22	17	2	0	0	0	0.027448	1	10228	10228		44.117	5.3107	1	25892	+		53153	24112	43960	43997	57815	57815					-0.05137737181473767
SHVFVGFLF	9	Unmodified	_SHVFVGFLF_					0	0	0		ENST00000505903.1_1_17:47072677-47072911:-|nuORF	ENST00000505903.1_1_17:47072677-47072911:-|nuORF	ENST00000505903.1_1_17:47072677-47072911:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.7846069335938	2	526.781828	1051.5491	-0.12232	-6.4437E-05	-1.9501	-0.0010273	-2.0724	-0.0010917	526.7806935175832	57.23	1.3252	57.23	56.744	58.069	0					51	30	3	0	0	0	0.027441	1	4850	4850		52.299	0	1	837870			53154	12900	43961	43998	57816	57816					0.025389656568222563
SHVGIRIWIP	10	Unmodified	_SHVGIRIWIP_					0	0	0			REV__ENSG00000070019|ENST00000261170|GUCY2C	REV__ENSG00000070019|ENST00000261170|GUCY2C	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3426513671875	2	589.345658	1176.67676	-3.0463	-0.0017953	-1.5159	-0.00089337	-4.5622	-0.0026887	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.71192	1	14884	14884		29.15	2.3535	1	272220	+		53155	16873	43962	43999	57817	57817					0.09549106250847217
SHVGSRIN	8	Unmodified	_SHVGSRIN_					0	0	0			REV__RNFT1|p.Y146Lfs*19|1|0.05|ENSG00000189050|chr17:59962906-59962907|-/TTTGCTTAAAGAGA|frameshift_variant	REV__RNFT1|p.Y146Lfs*19|1|0.05|ENSG00000189050|chr17:59962906-59962907|-/TTTGCTTAAAGAGA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	435.23236083984375	2	435.233033	868.451513	-0.34798	-0.00015145	-0.090278	-3.9292E-05	-0.43826	-0.00019074	435.2328603852248	36.818	0.91259	36.818	36.618	37.531	0					28	19	2	0	0	0	0.7224	1	1982	1982		38.806	1.647	1	613010	+		53156	22757	43963	44000	57818	57818					0.012025767806562726
SHVKAPEDK	9	Unmodified	_SHVKAPEDK_					0	0	0		ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	ENSG00000080200|ENST00000389622|CRYBG3	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.31982421875	2	505.766906	1009.51926	2.2365	0.0011311	4.299	0.0021743	6.5354	0.0033054	505.76806251522726	84.893	0.3739	84.893	84.672	85.046	0					10	8	2	0	0	0	0.027462	1	8860	8860		23.523	3.5259	1	82683			53157	1630	43964	44001	57819	57819					0.014879819208090339
SHVKLKEVSN	10	Unmodified	_SHVKLKEVSN_					0	0	0			REV__ENSG00000181690|ENST00000316981|PLAG1	REV__ENSG00000181690|ENST00000316981|PLAG1	MULTI-MSMS	OvCa9_classI_Rep4_	4	570.8237915039062	2	570.822212	1139.62987	1.0448	0.00059642	-1.9635	-0.0011208	-0.91869	-0.00052441	570.8212343162634	84.622	2.0327	81.959	81.594	83.627	-2.6629					120	41	4	0	0	0	0.60504	1	7118	7118		41.427	3.6151	1	1805900	+		53158	22244	43965	44002	57820	57820					0.06564201909031908
SHVLHSRLS	9	Unmodified	_SHVLHSRLS_					0	0	0		nc|ENSG00000090534|P40225-3|THPO;nc|ENSG00000090534|P40225-2|THPO;ENSG00000090534|ENST00000647395|THPO	nc|ENSG00000090534|P40225-3|THPO	nc|ENSG00000090534|P40225-3|THPO	MULTI-MSMS	OvCa9_classI_Rep2	2	518.2885131835938	2	518.28834	1034.56213	-0.93342	-0.00048378	0.68147	0.0003532	-0.25195	-0.00013058	518.2885607707362	53.253	1.1387	50.439	49.936	51.075	-2.8139					57	22	3	0	0	0	0.63422	1	3601	3601		27.882	1.1893	1	146170			53159	1841	43966	44003	57821	57821					0.04622796768899207
SHVLKALG	8	Unmodified	_SHVLKALG_					0	0	0		tr|A0A7D6ZRZ9|A0A7D6ZRZ9_9CLOTCysteinedesulfuraseOS=ClostridiumintestinaleOX=36845GN=HZF06_05810PE=3SV=1	tr|A0A7D6ZRZ9|A0A7D6ZRZ9_9CLOTCysteinedesulfuraseOS=ClostridiumintestinaleOX=36845GN=HZF06_05810PE=3SV=1	tr|A0A7D6ZRZ9|A0A7D6ZRZ9_9CLOTCysteinedesulfuraseOS=ClostridiumintestinaleOX=36845GN=HZF06_05810PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	412.7547607421875	2	412.75307	823.491587	0.5849	0.00024142	-0.21333	-8.8052E-05	0.37157	0.00015337	412.7528139383853	60.1	1.1041	60.1	59.839	60.943	0					48	26	3	0	0	0	0.59148	1	5228	5228		65.803	25.231	1	1999000			53160	35727	43967	44004	57822	57822					0.07278123451226293
SHVREALTN	9	Unmodified	_SHVREALTN_					0	0	0			REV__nc|ENSG00000166016|Q8N961-2|ABTB2	REV__nc|ENSG00000166016|Q8N961-2|ABTB2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.7935180664062	2	513.76998	1025.52541	0.15068	7.7414E-05	3.0945	0.0015899	3.2452	0.0016673	513.7714287359979	60.271	0.6945	56.841	56.65	57.345	-3.43					20	13	2	0	0	0	0.027462	1	4085	4085		34.173	0	1	78974	+		53161	21150	43968	44005	57823	57823					0.013665001523349929
SHVSLLIGKN	10	Unmodified	_SHVSLLIGKN_					0	0	0			REV__tr|A0A553SKJ5|A0A553SKJ5_NIACIDUF2536familyproteinOS=NialliacirculansOX=1397GN=CEQ21_18745PE=4SV=1	REV__tr|A0A553SKJ5|A0A553SKJ5_NIACIDUF2536familyproteinOS=NialliacirculansOX=1397GN=CEQ21_18745PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	533.7996215820312	2	534.314023	1066.61349	0.11057	5.9081E-05	3.0549	0.0016323	3.1655	0.0016914	534.3155097976952	90.348	1.5821	88.267	87.592	89.175	-2.0805					69	30	4	0	0	0	0.026915	1	5594	5594		20.947	0	1	242120	+		53162	30131	43969	44006	57824	57824					0.0828512074297123
SHVYWYRQ	8	Unmodified	_SHVYWYRQ_					0	0	0		nc|ENSG00000276557|A0A087X0M5|TRBV18	nc|ENSG00000276557|A0A087X0M5|TRBV18	nc|ENSG00000276557|A0A087X0M5|TRBV18	MULTI-SECPEP	OvCa9_classI_Rep2	2	570.3141479492188	2	569.775065	1137.53558	-1.8145	-0.0010339	0.76245	0.00043442	-1.0521	-0.00059946	569.7752622772375	117.86	1.0435	117.72	117.44	118.48	-0.14755					47	20	3	0	0	0	0.028476	1	11369	11369		25.45	10.585	1	93753			53163	15374	43970	44007	57825	57825					-0.027688921224580554
SHVYWYRQ	8	Unmodified	_SHVYWYRQ_					0	0	0		nc|ENSG00000276557|A0A087X0M5|TRBV18	nc|ENSG00000276557|A0A087X0M5|TRBV18	nc|ENSG00000276557|A0A087X0M5|TRBV18	MULTI-MATCH	OvCa9_classI_Rep3	3		2	569.775065	1137.53558	-0.35656	-0.00020316	-0.67087	-0.00038225	-1.0274	-0.00058541	569.7744546234303	118.53	0.94309	117.51	117.24	118.18	-1.0271	-0.041429	-0.00097991	NaN	18.324	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117890			53164	15374	43970	44007							-0.027688921224580554
SHVYWYRQ	8	Unmodified	_SHVYWYRQ_					0	0	0		nc|ENSG00000276557|A0A087X0M5|TRBV18	nc|ENSG00000276557|A0A087X0M5|TRBV18	nc|ENSG00000276557|A0A087X0M5|TRBV18	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	569.775065	1137.53558	-1.0793	-0.00061498	0.22169	0.00012631	-0.85765	-0.00048867	569.7749245856891	118.76	1.0382	117.42	117.15	118.19	-1.3444	-0.12762	3.7212E-05	NaN	18.324	40	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105090			53165	15374	43970	44007							-0.027688921224580554
SHWALLQACLN	11	Unmodified	_SHWALLQACLN_					0	0	0			REV__ENST00000451936.2_9:65973781-65973886:+|nuORF	REV__ENST00000451936.2_9:65973781-65973886:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	628.400146484375	2	628.31624	1254.61793	1.7129	0.0010762	-3.5672	-0.0022413	-1.8543	-0.0011651	628.3139136479455	112.29	0.50807	112.29	111.93	112.43	0					20	10	3	0	0	0	0.025265	1	12767	12767		35.152	11.629	1	299390	+		53166	24748	43971	44008	57826	57826					0.0008026189420888841
SHWRKHTSI	9	Unmodified	_SHWRKHTSI_					0	0	0			REV__ENST00000606019.5_1_7:96275054-96276828:-|nuORF	REV__ENST00000606019.5_1_7:96275054-96276828:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.3301391601562	2	576.307064	1150.59957	-1.0585	-0.00061003	0.29482	0.00016991	-0.7637	-0.00044013	576.3074206943252	34.981	0.377	34.981	34.772	35.149	0					10	7	2	0	0	0	0.027462	1	1711	1711		21.96	0	1	64770	+		53167	28073	43972	44009	57827	57827					0.03029888034529904
SHYDATGD	8	Unmodified	_SHYDATGD_					0	0	0			REV__PREX1|p.T970Vfs*46|1|0.08|ENSG00000124126|chr20:48650116-48650117|-/CATGGTGGTGATGCAGTGCTGGGTGTAC|frameshift_variant	REV__PREX1|p.T970Vfs*46|1|0.08|ENSG00000124126|chr20:48650116-48650117|-/CATGGTGGTGATGCAGTGCTGGGTGTAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1719055175781	2	433.169764	864.324976	2.6506	0.0011482	1.0551	0.00045706	3.7058	0.0016052	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.7043	8	1524	1306;1368;1512;1524;1611;1730;1775;1988		42.474	7.2737	1	60065	+		53168	18662	43973	44010	57828;57829;57830;57831;57832;57833;57834;57835	57831					-0.11261394235134503
SHYDATGD	8	Unmodified	_SHYDATGD_					0	0	0			REV__PREX1|p.T970Vfs*46|1|0.08|ENSG00000124126|chr20:48650116-48650117|-/CATGGTGGTGATGCAGTGCTGGGTGTAC|frameshift_variant	REV__PREX1|p.T970Vfs*46|1|0.08|ENSG00000124126|chr20:48650116-48650117|-/CATGGTGGTGATGCAGTGCTGGGTGTAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	433.17181396484375	2	433.169764	864.324976	1.9505	0.00084491	3.0435	0.0013184	4.9941	0.0021633	433.17100760562903	63.152	4.2639	60.118	58.202	62.466	-3.0339					141	92	2	0	0	0	0.73938	1	2352	2352		31.955	2.1133	1	38128	+		53169	18662	43973	44010	57836	57836					-0.11261394235134503
SHYGNDEYL	9	Unmodified	_SHYGNDEYL_					0	0	0		tr|A0A7D7AC80|A0A7D7AC80_9CLOTBeta-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18145PE=3SV=1	tr|A0A7D7AC80|A0A7D7AC80_9CLOTBeta-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18145PE=3SV=1	tr|A0A7D7AC80|A0A7D7AC80_9CLOTBeta-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18145PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.7997436523438	2	549.230353	1096.44615	-1.2796	-0.0007028	2.6522	0.0014567	1.3726	0.00075387	549.2316614643697	43.81	0.6491	40.803	40.589	41.238	-3.0074					21	12	2	0	0	0	0.027462	1	2122	2122		35.618	0	1	34402			53170	36223	43974	44011	57837	57837					-0.098211915924594
SHYLNNLPL	9	Unmodified	_SHYLNNLPL_					0	0	0		tr|A0A7D6VQ61|A0A7D6VQ61_9CLOTPhosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_21835PE=3SV=1	tr|A0A7D6VQ61|A0A7D6VQ61_9CLOTPhosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_21835PE=3SV=1	tr|A0A7D6VQ61|A0A7D6VQ61_9CLOTPhosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_21835PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.8045654296875	2	535.785099	1069.55564	-0.51478	-0.00027581	0.67861	0.00036359	0.16382	8.7775E-05	535.7849685615611	65.406	0.51708	65.406	65.19	65.707	0					17	12	2	0	0	0	0.027462	1	6047	6047		30.504	9.5567	1	464430			53171	34822	43975	44012	57838	57838					0.023648588175319674
SIAEDLDVQVG	11	Unmodified	_SIAEDLDVQVG_					0	0	0			REV__CON__P07224	REV__CON__P07224	MULTI-MSMS	OvCa9_classI_Rep2	2	573.2860717773438	2	573.287868	1144.56118	-2.583	-0.0014808	0.053946	3.0927E-05	-2.5291	-0.0014499	573.2878155681369	34.545	1.0883	31.835	31.612	32.701	-2.7097					58	21	5	0	0	0	0.50928	1	1343	1343		52.937	0	1	313120	+	+	53172	16190	43976	44013	57839	57839					-0.005315071813356553
SIAEGSTIHI	10	Unmodified	_SIAEGSTIHI_					0	0	0			REV__nc|ENSG00000121270|Q96J66-2|ABCC11	REV__nc|ENSG00000121270|Q96J66-2|ABCC11	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.35009765625	2	514.274564	1026.53457	0.81176	0.00041747	2.5121	0.0012919	3.3239	0.0017094	514.7764975603266	153.89	0.52892	153.89	153.64	154.17	0					14	10	2	0	0	0	0.026956	1	18037	18037		26.693	5.746	1	23169	+		53173	18534	43977	44014	57840	57840					0.022368487180074226
SIAFYDALN	9	Unmodified	_SIAFYDALN_					0	0	0		ENSG00000101871|ENST00000317552|MID1	ENSG00000101871|ENST00000317552|MID1	ENSG00000101871|ENST00000317552|MID1	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.8117980957031	2	507.250557	1012.48656	-0.32465	-0.00016468	-0.19376	-9.8285E-05	-0.51841	-0.00026296	507.24919426054265	73.04	0.72902	70.64	70.272	71.001	-2.3999					33	13	4	0	0	0	0.027462	1	5892	5892		21.96	12.254	1	19271			53174	2204	43978	44015	57841	57841					-0.0191822520206415
SIAISGELLTM	11	Oxidation (M)	_SIAISGELLTM(Oxidation (M))_		SIAISGELLTM(1)		SIAISGELLTM(72)	0	0	1			REV__ENSG00000114770|ENST00000334444|ABCC5	REV__ENSG00000114770|ENST00000334444|ABCC5	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8052978515625	2	575.804839	1149.59513	-1.5585	-0.0008974	2.274	0.0013094	0.71546	0.00041196	575.8061314868513	68.769	2.3919	66.148	65.622	68.014	-2.6203					144	47	5	0	0	0	0.26031	3	5422	5422;5447;5460		71.877	17.101	1	2257900	+		53175	18201	43979	44016	57842;57843;57844	57842		417			0.02631197986056577
SIAISGELLTM	11	Oxidation (M)	_SIAISGELLTM(Oxidation (M))_		SIAISGELLTM(1)		SIAISGELLTM(90)	0	0	1			REV__ENSG00000114770|ENST00000334444|ABCC5	REV__ENSG00000114770|ENST00000334444|ABCC5	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8067626953125	2	575.804839	1149.59513	-1.2006	-0.00069133	1.7808	0.0010254	0.58013	0.00033404	575.8058252746728	69.808	2.0898	66.327	65.96	68.05	-3.4812					121	42	4	0	0	0	0.13159	2	5269	5269;5283		90.37	13.052	1	3004400	+		53176	18201	43979	44016	57845;57846	57845		417			0.02631197986056577
SIAKRLRDRP	10	Unmodified	_SIAKRLRDRP_					0	0	0			REV__nc|ENSG00000135426|A2RU30-2|TESPA1	REV__nc|ENSG00000135426|A2RU30-2|TESPA1	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3687744140625	2	606.370195	1210.72584	-3.14	-0.001904	2.1543	0.0013063	-0.98567	-0.00059768	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.75313	1	14836	14836		24.519	0.99649	1	257720	+		53177	19287	43980	44017	57847	57847					0.12890394539795125
SIAKWIVD	8	Unmodified	_SIAKWIVD_					0	0	0		tr|A0A553SUS9|A0A553SUS9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_06750PE=4SV=1	tr|A0A553SUS9|A0A553SUS9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_06750PE=4SV=1	tr|A0A553SUS9|A0A553SUS9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_06750PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	466.26519775390625	2	466.26601	930.517468	0.1073	5.0032E-05	-3.7338	-0.0017409	-3.6265	-0.0016909	466.26414626124495	67.467	1.22	67.467	67.136	68.356	0					73	30	4	0	0	0	0.31378	1	6288	6288		104.75	0	1	5537800			53178	34636	43981	44018	57848	57848					0.04942972902847487
SIAKWIVD	8	Unmodified	_SIAKWIVD_					0	0	0		tr|A0A553SUS9|A0A553SUS9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_06750PE=4SV=1	tr|A0A553SUS9|A0A553SUS9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_06750PE=4SV=1	tr|A0A553SUS9|A0A553SUS9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_06750PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	466.26601	930.517468	0.086833	4.0487E-05	-4.6069	-0.0021481	-4.5201	-0.0021076	466.26372618461556	70.415	1.3768	67.844	67.311	68.688	-2.5707	0.18871	-0.0003798	NaN	104.75	68	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118140			53179	34636	43981	44018							0.04942972902847487
SIAPLKAID	9	Unmodified	_SIAPLKAID_					0	0	0			REV__ENST00000483048.1_1_1:208200590-208202449:-|nuORF	REV__ENST00000483048.1_1_1:208200590-208202449:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	464.280517578125	2	464.279118	926.543683	-0.49835	-0.00023137	-0.1943	-9.0207E-05	-0.69265	-0.00032158	464.2792310148003	81.133	1.5709	78.811	78.492	80.062	-2.3226					64	30	4	0	0	0	0.35444	1	4490	4490		56.721	0	1	604580	+		53180	16991	43982	44019	57849	57849					0.07747242074310634
SIAPLRFLF	9	Unmodified	_SIAPLRFLF_					0	0	0		nc|ENSG00000163932|Q05655-2|PRKCD	nc|ENSG00000163932|Q05655-2|PRKCD	nc|ENSG00000163932|Q05655-2|PRKCD	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.2821655273438	2	532.318577	1062.6226	-1.1108	-0.00059132	1.3983	0.00074432	0.28743	0.00015301	532.319194087217	65.204	0.24089	61.719	61.599	61.84	-3.4854					5	4	2	0	0	0	0.027462	1	4679	4679		20.947	0	1	11658			53181	15142	43983	44020	57850	57850					0.09379514099259723
SIAQKVALI	9	Unmodified	_SIAQKVALI_					0	0	0			REV__BRCA2|p.L3172Afs*44|1|0.79|ENSG00000139618|chr13:32396908-32396911|TACT/-|frameshift_variant	REV__BRCA2|p.L3172Afs*44|1|0.79|ENSG00000139618|chr13:32396908-32396911|TACT/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	472.27728271484375	2	471.80276	941.590967	-0.55404	-0.0002614	0.13468	6.3544E-05	-0.41935	-0.00019785	471.8026964464747	85.993	1.5562	83.772	83.436	84.992	-2.2204					66	30	3	0	0	0	0.027462	1	5052	5052		40.573	0	1	209740	+		53182	15710	43984	44021	57851	57851					0.11783521345330428
SIARDYMR	8	Unmodified	_SIARDYMR_					0	0	0			REV__nc|ENSG00000285025|Q9NQG6-2|MIEF1	REV__nc|ENSG00000285025|Q9NQG6-2|MIEF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.7934265136719	2	506.255651	1010.49675	0.37425	0.00018947	0.77456	0.00039213	1.1488	0.00058159	506.2562375451151	86.846	0.24585	84.219	84.054	84.3	-2.6269					6	4	2	0	0	0	0.028476	1	7360	7360		31.53	4.8369	1	10491	+		53183	17401	43985	44022	57852	57852					-0.00807940748461533
SIARDYMR	8	Unmodified	_SIARDYMR_					0	0	0			REV__nc|ENSG00000285025|Q9NQG6-2|MIEF1	REV__nc|ENSG00000285025|Q9NQG6-2|MIEF1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	506.255651	1010.49675	-1.6589	-0.00083982	4.9473	0.0025046	3.2885	0.0016648	506.25828787528565	85.632	0.39508	84.142	83.85	84.245	-1.4906	0.065437	-0.0004721	NaN	31.53	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13876	+		53184	17401	43985	44022							-0.00807940748461533
SIARDYMR	8	Unmodified	_SIARDYMR_					0	0	0			REV__nc|ENSG00000285025|Q9NQG6-2|MIEF1	REV__nc|ENSG00000285025|Q9NQG6-2|MIEF1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	506.255651	1010.49675	-1.6082	-0.00081416	7.2756	0.0036833	5.6674	0.0028691	506.2593301468116	86.089	0.55093	83.868	83.686	84.237	-2.2204	-0.20787	0.0018852	NaN	31.53	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25928	+		53185	17401	43985	44022							-0.00807940748461533
SIARVLTVI	9	Unmodified	_SIARVLTVI_					0	0	0		ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF	ENSG00000136942|ENST00000348462|RPL35	ENSG00000136942|ENST00000348462|RPL35	MULTI-MSMS	OvCa99_classI_Rep5	1	486.31591796875	2	486.316035	970.617516	1.3564	0.00065966	0.46291	0.00022512	1.8193	0.00088478	486.31616279564014	109.17	1.1524	109.17	108.89	110.04	0					60	25	4	0	0	0	0.29519	1	12356	12356		63.534	6.8128	1	1120100			53186	4541	43986	44023	57853	57853					0.13103210236658924
SIASEVIAR	9	Unmodified	_SIASEVIAR_					0	0	0		nc|ENSG00000136108|Q8WWK9-4|CKAP2;ENSG00000136108|ENST00000258607|CKAP2;nc|ENSG00000136108|Q8WWK9|CKAP2;nc|ENSG00000136108|Q8WWK9-6|CKAP2	nc|ENSG00000136108|Q8WWK9-4|CKAP2	nc|ENSG00000136108|Q8WWK9-4|CKAP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.2371826171875	2	473.271824	944.529095	0.052868	2.5021E-05	0.48289	0.00022854	0.53576	0.00025356	473.2720154259393	61.007	0.51171	61.007	60.688	61.2	0					19	11	2	0	0	0	0.027462	1	5371	5371		34.173	5.023	1	251130			53187	4457	43987	44024	57854	57854					0.05461169926195453
SIAVRIES	8	Unmodified	_SIAVRIES_					0	0	0		tr|A0A553SMN7|A0A553SMN7_NIACIDNAhelicaseOS=NialliacirculansOX=1397GN=CEQ21_22965PE=4SV=1	tr|A0A553SMN7|A0A553SMN7_NIACIDNAhelicaseOS=NialliacirculansOX=1397GN=CEQ21_22965PE=4SV=1	tr|A0A553SMN7|A0A553SMN7_NIACIDNAhelicaseOS=NialliacirculansOX=1397GN=CEQ21_22965PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	437.7524719238281	2	437.753267	873.491981	-0.17219	-7.5375E-05	0.28315	0.00012395	0.11097	4.8577E-05	437.75330032578216	34.699	1.0795	34.699	34.304	35.384	0					53	22	4	0	0	0	0.57734	1	1690	1690		68.787	0	1	1377500			53188	33856	43988	44025	57855	57855					0.05017498380436791
SICQSSGTNW	10	Unmodified	_SICQSSGTNW_					0	0	0			REV__ENSG00000088812|ENST00000262919|ATRN	REV__ENSG00000088812|ENST00000262919|ATRN	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.784912109375	2	541.732206	1081.44986	-0.29085	-0.00015756	1.2946	0.00070133	1.0038	0.00054377	541.7322289435741	90.908	0.659	88.828	88.516	89.175	-2.0805					14	12	2	0	0	0	0.027632	1	5681	5681		98.629	1.1567	1	13581	+		53189	17181	43989	44026	57856	57856					-0.08760845090273506
SICRKNPK	8	Unmodified	_SICRKNPK_					0	0	0		ENSG00000103540|ENST00000694978|CCP110	ENSG00000103540|ENST00000694978|CCP110	ENSG00000103540|ENST00000694978|CCP110	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.29119873046875	2	473.268561	944.52257	2.2381	0.0010592	-4.441	-0.0021018	-2.2029	-0.0010426	473.2665720559099	76.5	0.40136	76.5	76.199	76.6	0					12	9	2	0	0	0	0.028476	1	7628	7628		31.955	6.5047	1	319740			53190	2327	43990	44027	57857	57857					0.04808953493818535
SIDDKYVSE	9	Unmodified	_SIDDKYVSE_					0	0	0			REV__tr|A0A7D6VUT6|A0A7D6VUT6_9CLOTTranscription-repair-couplingfactorOS=ClostridiumintestinaleOX=36845GN=mfdPE=3SV=1	REV__tr|A0A7D6VUT6|A0A7D6VUT6_9CLOTTranscription-repair-couplingfactorOS=ClostridiumintestinaleOX=36845GN=mfdPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.278564453125	2	528.248212	1054.48187	0.088775	4.6895E-05	-2.1082	-0.0011136	-2.0194	-0.0010667	528.2487306831204	57.796	0.25023	57.796	57.609	57.859	0					8	5	2	0	0	0	0.027462	1	4872	4872		37.812	0	1	102330	+		53191	31693	43991	44028	57858	57858					-0.04319154135464487
SIDILKSSN	9	Unmodified	_SIDILKSSN_					0	0	0		ENSG00000185875|ENST00000376356|THNSL1	ENSG00000185875|ENST00000376356|THNSL1	ENSG00000185875|ENST00000376356|THNSL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	488.7887878417969	2	488.769114	975.523675	-0.69038	-0.00033744	0.047151	2.3046E-05	-0.64323	-0.00031439	488.76897880935064	55.679	0.76219	52.384	51.906	52.668	-3.2944					31	14	3	0	0	0	0.027447	1	3520	3520		39.253	3.6345	1	121950			53192	8294	43992	44029	57859	57859					0.034934463437252816
SIDKFQVEV	9	Unmodified	_SIDKFQVEV_					0	0	0			REV__tr|A0A553SFW8|A0A553SFW8_NIACIYheC/YheDfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09640PE=4SV=1	REV__tr|A0A553SFW8|A0A553SFW8_NIACIYheC/YheDfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09640PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	532.7833862304688	2	532.784764	1063.55498	-1.0788	-0.00057479	0.30484	0.00016241	-0.77401	-0.00041238	532.7849580004024	73.009	3.1333	70.61	69.802	72.936	-2.3999					146	59	5	0	0	0	0.10502	2	5957	5957;5977		95.815	7.6382	1	1448000	+		53193	29632	43993	44030	57860;57861	57860					0.025740193778119647
SIDKIYKLLE	10	Unmodified	_SIDKIYKLLE_					0	0	0			REV__tr|A0A7D7AHE2|A0A7D7AHE2_9CLOTDJ-1/PfpIfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05320PE=4SV=1	REV__tr|A0A7D7AHE2|A0A7D7AHE2_9CLOTDJ-1/PfpIfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05320PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	611.3560791015625	2	611.358096	1220.70164	-3.7398	-0.0022864	0.47754	0.00029195	-3.2623	-0.0019944	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.74374	1	15260	15260		25.574	0	1	331570	+		53194	32730	43994	44031	57862	57862					0.10011696542937898
SIDKIYKLLE	10	Unmodified	_SIDKIYKLLE_					0	0	0			REV__tr|A0A7D7AHE2|A0A7D7AHE2_9CLOTDJ-1/PfpIfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05320PE=4SV=1	REV__tr|A0A7D7AHE2|A0A7D7AHE2_9CLOTDJ-1/PfpIfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05320PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3546142578125	2	611.358096	1220.70164	-3.1571	-0.0019301	-0.12375	-7.5658E-05	-3.2809	-0.0020058	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.74374	1	12842	12842		25.574	2.0514	1	666990	+		53195	32730	43994	44031	57863	57863					0.10011696542937898
SIDLAKNTIN	10	Unmodified	_SIDLAKNTIN_					0	0	0		tr|A0A7D6ZEP6|A0A7D6ZEP6_9CLOTStageIIIsporulationproteinAEOS=ClostridiumintestinaleOX=36845GN=spoIIIAEPE=4SV=1	tr|A0A7D6ZEP6|A0A7D6ZEP6_9CLOTStageIIIsporulationproteinAEOS=ClostridiumintestinaleOX=36845GN=spoIIIAEPE=4SV=1	tr|A0A7D6ZEP6|A0A7D6ZEP6_9CLOTStageIIIsporulationproteinAEOS=ClostridiumintestinaleOX=36845GN=spoIIIAEPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	544.7885131835938	2	544.800946	1087.58734	1.4645	0.00079787	0.61357	0.00033427	2.0781	0.0011321	544.8012409842156	83.014	0.89775	83.014	82.522	83.419	0					38	20	3	0	0	0	0.55109	1	8614	8614		47.96	3.5823	1	2696200			53196	35485	43995	44032	57864	57864					0.04704806780819126
SIDNCKKAL	9	Unmodified	_SIDNCKKAL_					0	0	0		chr3:49469055-49510419|362|15.48|0.47|5.05|+|0|DAG1,DAG1|2	chr3:49469055-49510419|362|15.48|0.47|5.05|+|0|DAG1,DAG1|2	chr3:49469055-49510419|362|15.48|0.47|5.05|+|0|DAG1,DAG1|2	MSMS	OvCa99_classI_Rep5	1	496.2673645019531	2	496.265684	990.516816	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.535	1	67.535	67.035	68.035	0								0	0	0	0.043559	1	6325	6325		79.451	10.664	1				53197	486	43996	44033	57865	57865					0.021178101914983927
SIEFLDQRI	9	Unmodified	_SIEFLDQRI_					0	0	0		tr|A0A553SHR6|A0A553SHR6_NIACIPhosphonateABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=phnCPE=4SV=1	tr|A0A553SHR6|A0A553SHR6_NIACIPhosphonateABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=phnCPE=4SV=1	tr|A0A553SHR6|A0A553SHR6_NIACIPhosphonateABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=phnCPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	560.806396484375	2	560.803488	1119.59242	1.8207	0.0010211	3.9424	0.0022109	5.7631	0.0032319	560.8055147932859	144.6	1.5674	144.6	144.06	145.63	0					54	32	3	0	0	0	0.46356	1	16907	16907		45.972	3.108	1	173830			53198	33300	43997	44034	57866	57866					0.03741110643431966
SIEGPMGFYI	10	Unmodified	_SIEGPMGFYI_					0	0	0			REV__nc|ENSG00000105290|P51693|APLP1	REV__nc|ENSG00000105290|P51693|APLP1	MULTI-MSMS	OvCa99_classI_Rep5	1	557.2701416015625	2	557.267893	1112.52123	1.5046	0.00083849	3.5224	0.0019629	5.027	0.0028014	557.2695128345554	145.7	0.9984	145.7	145.23	146.23	0					35	20	3	0	0	0	0.58282	1	17054	17054		44.117	4.864	1	199370	+		53199	17709	43998	44035	57867	57867					-0.030527253855780145
SIEGVRHVF	9	Unmodified	_SIEGVRHVF_					0	0	0		ENST00000424478.5_1_14:45565874-45584113:+|nuORF;ENSG00000185246|ENST00000355765|PRPF39;nc|ENSG00000185246|Q86UA1-2|PRPF39;ENST00000554785.1_1_14:45579308-45583868:+|nuORF	ENST00000424478.5_1_14:45565874-45584113:+|nuORF	ENST00000424478.5_1_14:45565874-45584113:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.2962646484375	2	522.285266	1042.55598	-0.41936	-0.00021903	0.70829	0.00036993	0.28893	0.0001509	522.7875494285234	99.648	0.19879	98.817	98.666	98.865	-0.83051					5	3	2	0	0	0	0.027462	1	9090	9090		35.618	11.416	1	5183.8			53200	8237	43999	44036	57868	57868					0.03640278537386621
SIEHMLLF	8	Unmodified	_SIEHMLLF_					0	0	0			REV__ENST00000407904.7_1_7:2834695-2854521:-|nuORF	REV__ENST00000407904.7_1_7:2834695-2854521:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.7906188964844	2	495.259871	988.505189	2.5829	0.0012792	-3.7511	-0.0018578	-1.1681	-0.00057853	495.2577784455194	96.358	0.54221	96.358	96.21	96.753	0					19	12	2	0	0	0	0.028476	1	10544	10544		26.796	0	1	356360	+		53201	25456	44000	44037	57869	57869					0.01047613168168482
SIEIRPNSLV	10	Unmodified	_SIEIRPNSLV_					0	0	0		ENST00000266589.10_2_12:46369150-46384197:-|nuORF	ENST00000266589.10_2_12:46369150-46384197:-|nuORF	ENST00000266589.10_2_12:46369150-46384197:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.325927734375	2	564.324588	1126.63462	0.97654	0.00055109	-1.4497	-0.00081813	-0.47321	-0.00026704	564.3237500544434	102.85	2.5142	100.65	100.25	102.77	-2.1994					128	47	4	0	0	0	0.47142	1	9342	9342		58.23	3.4536	1	5226800			53202	9959	44001	44038	57870	57870					0.0763708605179545
SIEKLKDVI	9	Unmodified	_SIEKLKDVI_					0	0	0		ENSG00000154305|ENST00000344922|MIA3;nc|ENSG00000154305|Q5JRA6-4|MIA3	ENSG00000154305|ENST00000344922|MIA3	ENSG00000154305|ENST00000344922|MIA3	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.2792358398438	2	522.818607	1043.62266	-0.25927	-0.00013555	2.3426	0.0012248	2.0833	0.0010892	523.3198122202351	75.321	0.31492	73.467	73.271	73.586	-1.854					6	5	2	0	0	0	0.027462	1	6202	6202		27.882	0	1	7383.2			53203	5727	44002	44039	57871	57871					0.10259469308630287
SIEKWEAQI	9	Unmodified	_SIEKWEAQI_					0	0	0			REV__nc|ENSG00000157106|Q96Q15-4|SMG1	REV__nc|ENSG00000157106|Q96Q15-4|SMG1	MULTI-MSMS	OvCa99_classI_Rep5	1	552.2875366210938	2	552.290214	1102.56587	-0.47056	-0.00025989	-3.3182	-0.0018326	-3.7888	-0.0020925	552.288277160636	42.687	0.98272	42.687	42.453	43.435	0					56	22	4	0	0	0	0.13504	1	2756	2756		87.696	5.4559	1	3313400	+		53204	20512	44003	44040	57872	57872					0.018694217520987877
SIELLNKDL	9	Unmodified	_SIELLNKDL_					0	0	0			REV__ENSG00000101421|ENST00000217402|CHMP4B	REV__ENSG00000101421|ENST00000217402|CHMP4B	MULTI-MSMS	OvCa9_classI_Rep3	3	522.8017578125	2	522.800414	1043.58628	-0.78114	-0.00040838	0.97045	0.00050735	0.1893	9.8967E-05	522.8007535698202	102.18	1.6733	100.66	100.27	101.94	-1.5211					69	31	4	0	0	0	0.28934	1	7027	7027		64.207	7.4862	1	499170	+		53205	17501	44004	44041	57873	57873					0.06622592411895312
SIENNVIGI	9	Unmodified	_SIENNVIGI_					0	0	0		tr|A0A7D6ZJM6|A0A7D6ZJM6_9CLOTAspartatecarbamoyltransferaseOS=ClostridiumintestinaleOX=36845GN=pyrBPE=3SV=1	tr|A0A7D6ZJM6|A0A7D6ZJM6_9CLOTAspartatecarbamoyltransferaseOS=ClostridiumintestinaleOX=36845GN=pyrBPE=3SV=1	tr|A0A7D6ZJM6|A0A7D6ZJM6_9CLOTAspartatecarbamoyltransferaseOS=ClostridiumintestinaleOX=36845GN=pyrBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2760314941406	2	479.763832	957.513111	2.2834	0.0010955	0.10371	4.9756E-05	2.3871	0.0011453	479.76404583282994	85.839	1.1357	85.839	85.585	86.72	0					30	27	2	0	0	0	0.027417	1	9116	9116		76.847	20.126	1	524810			53206	35647	44005	44042	57874	57874					0.032654636892857525
SIEVTSDSEL	10	Unmodified	_SIEVTSDSEL_					0	0	0		ENSG00000137225|ENST00000398776|CAPN11	ENSG00000137225|ENST00000398776|CAPN11	ENSG00000137225|ENST00000398776|CAPN11	MULTI-MSMS	OvCa99_classI_Rep5	1	540.2613525390625	2	540.258776	1078.503	1.913	0.0010335	0.66	0.00035657	2.573	0.0013901	540.2590380736041	128.92	1.4011	128.92	128.56	129.96	0					55	29	3	0	0	0	0.33376	1	14957	14957		76.774	7.9873	1	825350			53207	4570	44006	44043	57875	57875					-0.033111888266148526
SIFEKNNLI	9	Unmodified	_SIFEKNNLI_					0	0	0			REV__ENST00000494357.1_1_7:99170818-99170905:+|nuORF	REV__ENST00000494357.1_1_7:99170818-99170905:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	539.3012084960938	2	539.300581	1076.58661	-0.56091	-0.0003025	0.52285	0.00028197	-0.038069	-2.053E-05	539.3007001572946	96.135	2.8085	95.107	94.813	97.622	-1.0281					133	56	4	0	0	0	0.091859	1	8676	8676		99.375	5.3685	1	531600	+		53208	26724	44007	44044	57876	57876					0.05138012131760661
SIFGAISAGA	10	Unmodified	_SIFGAISAGA_					0	0	0		tr|A0A553SIR1|A0A553SIR1_NIACINupC/NupGfamilynucleosideCNTtransporterOS=NialliacirculansOX=1397GN=CEQ21_15305PE=3SV=1	tr|A0A553SIR1|A0A553SIR1_NIACINupC/NupGfamilynucleosideCNTtransporterOS=NialliacirculansOX=1397GN=CEQ21_15305PE=3SV=1	tr|A0A553SIR1|A0A553SIR1_NIACINupC/NupGfamilynucleosideCNTtransporterOS=NialliacirculansOX=1397GN=CEQ21_15305PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	447.24114990234375	2	447.239993	892.465432	0.64054	0.00028647	-0.86552	-0.0003871	-0.22498	-0.00010062	447.2394937791373	59.958	1.2345	56.528	56.21	57.444	-3.43					61	24	4	0	0	0	0.42962	1	4041	4041		64.207	2.0999	1	966640			53209	33414	44008	44045	57877	57877					0.014898094890895663
SIFKNKNQK	9	Unmodified	_SIFKNKNQK_					0	0	0			REV__tr|A0A553SSS7|A0A553SSS7_NIACIPeptidaseS1domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03690PE=4SV=1	REV__tr|A0A553SSS7|A0A553SSS7_NIACIPeptidaseS1domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03690PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	553.820068359375	2	553.819473	1105.62439	0.35055	0.00019414	-0.44692	-0.00024751	-0.09637	-5.3372E-05	553.8191095428485	32.261	1.2872	29.551	29.233	30.52	-2.7097					61	25	4	0	0	0	0.35444	1	1041	1041		56.721	0	1	380430	+		53210	30874	44009	44046	57878	57878					0.07580523117235316
SIFKQPVTK	9	Unmodified	_SIFKQPVTK_					0	0	0		nc|ENSG00000071655|O95983-2|MBD3;ENSG00000071655|ENST00000434436|MBD3;ENST00000590830.5_1_19:1578341-1584901:-|nuORF;ENSG00000134046|ENST00000256429|MBD2	nc|ENSG00000071655|O95983-2|MBD3	nc|ENSG00000071655|O95983-2|MBD3	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.3155517578125	2	524.313492	1046.61243	-0.54864	-0.00028766	0.21818	0.00011439	-0.33046	-0.00017326	524.3135190899694	56.34	1.2156	53.045	52.718	53.934	-3.2944					60	23	4	0	0	0	0.07097	1	3599	3599		106.68	18.987	1	574060			53211	1454	44010	44047	57879	57879					0.09098906374038052
SIFKQPVTK	9	Unmodified	_SIFKQPVTK_					0	0	0		nc|ENSG00000071655|O95983-2|MBD3;ENSG00000071655|ENST00000434436|MBD3;ENST00000590830.5_1_19:1578341-1584901:-|nuORF;ENSG00000134046|ENST00000256429|MBD2	nc|ENSG00000071655|O95983-2|MBD3	nc|ENSG00000071655|O95983-2|MBD3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	524.313492	1046.61243	-0.82188	-0.00043092	-0.91772	-0.00048117	-1.7396	-0.00091209	524.3136540793618	55.835	1.1886	53.031	52.631	53.82	-2.804	-0.00718	-0.0011366	NaN	106.68	68	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160300			53212	1454	44010	44047							0.09098906374038052
SIFLESQLI	9	Unmodified	_SIFLESQLI_					0	0	0			REV__tr|A0A7D6VXP0|A0A7D6VXP0_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09465PE=4SV=1	REV__tr|A0A7D6VXP0|A0A7D6VXP0_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09465PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	525.2957153320312	2	525.297507	1048.58046	-0.74249	-0.00039003	-2.9129	-0.0015301	-3.6554	-0.0019202	525.2962332041591	48.014	1.342	45.304	44.885	46.228	-2.7097					84	26	5	0	0	0	0.62352	1	2968	2968		29.15	0	1	278320	+		53213	31783	44011	44048	57880	57880					0.058114939002507526
SIFLISFQL	9	Unmodified	_SIFLISFQL_					0	0	0			REV__ENST00000284617.6_1_1:229460549-229460678:-|nuORF	REV__ENST00000284617.6_1_1:229460549-229460678:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	534.3110961914062	2	534.310418	1066.60628	-0.66808	-0.00035696	1.1138	0.00059514	0.44577	0.00023818	534.3108662098824	124.05	1.2329	123.82	123.34	124.57	-0.23193					58	24	4	0	0	0	0.2422	1	12055	12055		69.628	5.4204	1	92890	+		53214	24129	44012	44049	57881	57881					0.07564388142509415
SIFLISFQL	9	Unmodified	_SIFLISFQL_					0	0	0			REV__ENST00000284617.6_1_1:229460549-229460678:-|nuORF	REV__ENST00000284617.6_1_1:229460549-229460678:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.3118286132812	2	534.310418	1066.60628	-2.6976	-0.0014413	2.9376	0.0015696	0.24005	0.00012826	534.3118641663157	125.31	1.0556	123.9	123.62	124.68	-1.4143					48	20	3	0	0	0	0.14998	1	11901	11901		84.916	2.165	1	114010	+		53215	24129	44012	44049	57882	57882					0.07564388142509415
SIFLISFQL	9	Unmodified	_SIFLISFQL_					0	0	0			REV__ENST00000284617.6_1_1:229460549-229460678:-|nuORF	REV__ENST00000284617.6_1_1:229460549-229460678:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	534.310418	1066.60628	2.2342	0.0011937	-1.6882	-0.00090203	0.54595	0.00029171	534.3093904303349	124.97	1.0976	123.91	123.64	124.73	-1.0519	0.036937	-0.0020202	NaN	84.916	56	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116990	+		53216	24129	44012	44049							0.07564388142509415
SIFPRSIAL	9	Unmodified	_SIFPRSIAL_					0	0	0			REV__ENSG00000167654|ENST00000450849|ATCAY	REV__ENSG00000167654|ENST00000450849|ATCAY	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.7643127441406	2	502.300384	1002.58622	-0.50275	-0.00025253	-1.5679	-0.00078754	-2.0706	-0.0010401	502.29928841377654	61.933	0.47849	58.476	58.336	58.815	-3.4577					11	9	2	0	0	0	0.027453	1	4275	4275		45.972	8.1607	1	20512	+		53217	21294	44013	44050	57883	57883					0.08502637202559526
SIFQELELN	9	Unmodified	_SIFQELELN_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.3150634765625	2	546.782222	1091.54989	2.0592	0.0011259	0.26651	0.00014572	2.3257	0.0012716	546.7822758638307	84.014	0.3786	84.014	83.841	84.22	0					21	8	3	0	0	0	0.027444	1	8750	8750		46.457	10.838	1	609300			53218	7566	44014	44051	57884	57884					0.007777155151870829
SIFRFLEV	8	Unmodified	_SIFRFLEV_					0	0	0		tr|A0A7D6W0Y9|A0A7D6W0Y9_9CLOTSEL1-likerepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01290PE=4SV=1	tr|A0A7D6W0Y9|A0A7D6W0Y9_9CLOTSEL1-likerepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01290PE=4SV=1	tr|A0A7D6W0Y9|A0A7D6W0Y9_9CLOTSEL1-likerepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01290PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.2597961425781	2	505.78711	1009.55967	-0.71205	-0.00036015	0.37835	0.00019136	-0.33371	-0.00016878	505.78734059188105	80.732	2.0312	78.41	78.081	80.112	-2.3226					82	39	3	0	0	0	0.028476	1	4423	4423		38.806	0	1	1059000			53219	35394	44015	44052	57885	57885					0.055269483112283524
SIFRTPISK	9	Unmodified	_SIFRTPISK_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM;ASPM|p.S752Lfs*5|1|0.13|ENSG00000066279|chr1:197133497-197133515|CAGTATAAGCTCTGAGAGA/-|frameshift_variant	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.267822265625	2	524.811116	1047.60768	0.23301	0.00012229	-1.0016	-0.00052564	-0.76858	-0.00040336	524.8104208575218	70.507	1.7344	67.936	67.165	68.899	-2.5707					82	33	3	0	0	0	0.027457	1	5635	5635		47.96	28.856	1	318860			53220	1348	44016	44053	57886	57886					0.08578022231267823
SIFRTPISK	9	Unmodified	_SIFRTPISK_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM;ASPM|p.S752Lfs*5|1|0.13|ENSG00000066279|chr1:197133497-197133515|CAGTATAAGCTCTGAGAGA/-|frameshift_variant	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MATCH	OvCa9_classI_Rep3	3		2	524.811116	1047.60768	0.04541	2.3832E-05	-0.17135	-8.9928E-05	-0.12594	-6.6096E-05	524.8108097976508	70.561	0.86767	67.842	67.648	68.516	-2.7196	-0.13382	0.00020963	NaN	47.96	39	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76998			53221	1348	44016	44053							0.08578022231267823
SIFSINLPV	9	Unmodified	_SIFSINLPV_					0	0	0			REV__tr|A0A7D7A660|A0A7D7A660_9CLOTtRNA(guanine-N(7)-)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=trmBPE=3SV=1	REV__tr|A0A7D7A660|A0A7D7A660_9CLOTtRNA(guanine-N(7)-)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=trmBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	495.28741455078125	2	495.286943	988.559333	0.33859	0.0001677	-0.72846	-0.0003608	-0.38988	-0.0001931	495.28647269641976	109.21	1.5826	109.04	108.72	110.3	-0.17351					86	31	5	0	0	0	0.28934	1	10296	10296		64.207	13.015	1	489630	+		53222	32652	44017	44054	57887	57887					0.06459528591358321
SIFSKFTSK	9	Unmodified	_SIFSKFTSK_					0	0	0		nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-13|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;ENSG00000072518|ENST00000402010|MARK2	nc|ENSG00000072518|Q7KZI7-10|MARK2	nc|ENSG00000072518|Q7KZI7-10|MARK2	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.2784423828125	2	522.78985	1043.56515	-0.2944	-0.00015391	0.023958	1.2525E-05	-0.27044	-0.00014138	522.7896526049932	76.033	1.4524	74.179	73.638	75.091	-1.854					61	27	4	0	0	0	0.027446	1	6276	6276		60.118	0	1	254210			53223	1475	44018	44055	57888	57888					0.04510627103036313
SIFSKFTSK	9	Unmodified	_SIFSKFTSK_					0	0	0		nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-13|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;ENSG00000072518|ENST00000402010|MARK2	nc|ENSG00000072518|Q7KZI7-10|MARK2	nc|ENSG00000072518|Q7KZI7-10|MARK2	MULTI-MATCH	OvCa99_classI_Rep5	1		2	522.78985	1043.56515	0.096918	5.0668E-05	-4.3033	-0.0022497	-4.2064	-0.0021991	522.788297111319	74.267	0.38271	74.267	74.095	74.478	0	0.16825	-0.0043986	NaN	47.96	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1620900			53224	1475	44018	44055							0.04510627103036313
SIFSKFTSK	9	Unmodified	_SIFSKFTSK_					0	0	0		nc|ENSG00000072518|Q7KZI7-10|MARK2;nc|ENSG00000072518|Q7KZI7-13|MARK2;nc|ENSG00000072518|Q7KZI7-7|MARK2;nc|ENSG00000072518|Q7KZI7-2|MARK2;nc|ENSG00000072518|Q7KZI7-15|MARK2;nc|ENSG00000072518|Q7KZI7-5|MARK2;nc|ENSG00000072518|Q7KZI7-16|MARK2;nc|ENSG00000072518|Q7KZI7-4|MARK2;nc|ENSG00000072518|Q7KZI7-9|MARK2;nc|ENSG00000072518|Q7KZI7-12|MARK2;nc|ENSG00000072518|Q7KZI7-14|MARK2;nc|ENSG00000072518|Q7KZI7-3|MARK2;nc|ENSG00000072518|Q7KZI7-6|MARK2;nc|ENSG00000072518|Q7KZI7-11|MARK2;nc|ENSG00000072518|Q7KZI7-8|MARK2;ENSG00000072518|ENST00000402010|MARK2	nc|ENSG00000072518|Q7KZI7-10|MARK2	nc|ENSG00000072518|Q7KZI7-10|MARK2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	522.78985	1043.56515	-0.88858	-0.00046454	0.57895	0.00030267	-0.30963	-0.00016187	522.7899364014289	76.222	1.6568	73.851	73.267	74.924	-2.3715	-0.24794	0.00070618	NaN	47.96	74	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	419340			53225	1475	44018	44055							0.04510627103036313
SIGACSRTK	9	Unmodified	_SIGACSRTK_					0	0	0			REV__ENST00000462052.1_1_7:6513727-6523688:-|nuORF	REV__ENST00000462052.1_1_7:6513727-6523688:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	460.7818298339844	2	461.742376	921.4702	-0.65564	-0.00030274	-3.7842	-0.0017473	-4.4398	-0.00205	461.74069590137407	43.441	0.42242	43.441	43.185	43.608	0					15	9	2	0	0	0	0.027455	1	2849	2849		19.997	0	1	69191	+		53226	19371	44019	44056	57889	57889					0.006323703601992747
SIGDIFLKY	9	Unmodified	_SIGDIFLKY_					0	0	0		nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;chr3:172752472-172754509|367|12.11|0.58|4.37|+|ENST00000540509|ECT2,ECT2;chr3:172750857-172752150|383|11.5|0.42|4.78|+|ENST00000540509|ECT2,ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.2916870117188	2	528.292225	1054.5699	-1.7523	-0.00092575	0.95014	0.00050195	-0.80221	-0.0004238	528.2921601924587	124.51	1.3878	123.12	122.52	123.91	-1.3908					38	26	2	0	0	0	0.50149	1	11824	11824		42.396	3.59	1	69531			53227	478	44020	44057	57890	57890					0.044795112457904906
SIGEEINKEI	10	Unmodified	_SIGEEINKEI_					0	0	0		tr|A0A7D6VY26|A0A7D6VY26_9CLOTAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_11150PE=3SV=1	tr|A0A7D6VY26|A0A7D6VY26_9CLOTAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_11150PE=3SV=1	tr|A0A7D6VY26|A0A7D6VY26_9CLOTAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_11150PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	566.298095703125	2	566.298236	1130.58192	-0.91483	-0.00051807	-0.010056	-5.6947E-06	-0.92489	-0.00052376	566.2978698656331	100.56	0.98025	98.952	98.518	99.498	-1.6053					67	19	5	0	0	0	0.18931	1	6821	6821		96.034	1.6245	1	1325600			53228	35311	44021	44058	57891	57891					0.021850831983329044
SIGFDVGTVGN	11	Unmodified	_SIGFDVGTVGN_					0	0	0		tr|A0A553SJC4|A0A553SJC4_NIACILPXTGcellwallanchordomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16495PE=4SV=1	tr|A0A553SJC4|A0A553SJC4_NIACILPXTGcellwallanchordomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16495PE=4SV=1	tr|A0A553SJC4|A0A553SJC4_NIACILPXTGcellwallanchordomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16495PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.2833251953125	2	533.264196	1064.51384	-1.6143	-0.00086085	2.256	0.0012031	0.64172	0.00034221	533.7650469811973	93.65	0.4075	91.142	90.763	91.171	-2.5072					13	8	2	0	0	0	0.025315	1	8167	8167		45.972	1.5951	1	72921			53229	33489	44022	44059	57892	57892					-0.01583741661647764
SIGGKLPVVP	10	Unmodified	_SIGGKLPVVP_					0	0	0		ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	MULTI-SECPEP	OvCa9_classI_Rep2	2	484.774169921875	2	483.80276	965.590967	1.3031	0.00063046	-1.4377	-0.00069557	-0.13458	-6.5112E-05	483.80178751074624	90.918	0.98902	89.683	89.39	90.379	-1.2355					41	18	4	0	0	0	0.026665	1	8121	8121		60.972	3.1607	1	74245			53230	8849	44023	44060	57893	57893					0.10679521345332432
SIGLHLLLL	9	Unmodified	_SIGLHLLLL_					0	0	0			REV__chr1:103651377-103750424|201|17.3|0.0|20.72|+|0|TE_info:HERVE_a-int,HERVE_a-int_dup2,ERV1,LTR,donor,-,103648516,103651377|None,AMY1C|46	REV__chr1:103651377-103750424|201|17.3|0.0|20.72|+|0|TE_info:HERVE_a-int,HERVE_a-int_dup2,ERV1,LTR,donor,-,103648516,103651377|None,AMY1C|46	MULTI-MSMS	OvCa99_classI_Rep5	1	489.82330322265625	2	489.820953	977.627353	0.55998	0.00027429	1.5548	0.00076157	2.1148	0.0010359	489.82156186147023	152	0.75154	152	151.74	152.49	0					27	15	2	0	0	0	0.52083	1	17830	17830		40.573	7.057	1	92720	+		53231	15791	44024	44061	57894	57894					0.13764398242051357
SIGMNNNVVPK	11	Unmodified	_SIGMNNNVVPK_					0	0	0			REV__ENSG00000198826|ENST00000361627|ARHGAP11A	REV__ENSG00000198826|ENST00000361627|ARHGAP11A	MULTI-SECPEP	OvCa9_classI_Rep3	3	586.8340454101562	2	586.808248	1171.60194	-2.7261	-0.0015997	-1.4845	-0.00087113	-4.2107	-0.0024708	586.807284149621	92.251	1.2761	90.227	89.89	91.166	-2.0241					61	26	3	0	0	0	0.025594	1	5846	5846		33.922	7.2287	1	226900	+		53232	23070	44025	44062	57895	57895					0.023005556572798014
SIGRALLADP	10	Unmodified	_SIGRALLADP_					0	0	0		tr|A0A7D6W3A0|A0A7D6W3A0_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09425PE=3SV=1	tr|A0A7D6W3A0|A0A7D6W3A0_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09425PE=3SV=1	tr|A0A7D6W3A0|A0A7D6W3A0_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09425PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.7940673828125	2	506.792924	1011.57129	-1.266	-0.00064161	-1.5062	-0.00076332	-2.7722	-0.0014049	506.793092406575	71.551	1.0261	68.095	67.776	68.802	-3.4563					50	20	4	0	0	0	0.50999	1	5453	5453		52.937	3.4952	1	468980			53233	35448	44026	44063	57896	57896					0.06597145334558263
SIGTIGLIK	9	Unmodified	_SIGTIGLIK_					0	0	0		tr|A0A553SKI3|A0A553SKI3_NIACIRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=sigKPE=3SV=1;tr|A0A553SPB7|A0A553SPB7_NIACIRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=sigEPE=3SV=1	tr|A0A553SKI3|A0A553SKI3_NIACIRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=sigKPE=3SV=1;tr|A0A553SPB7|A0A553SPB7_NIACIRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=sigEPE=3SV=1	tr|A0A553SKI3|A0A553SKI3_NIACIRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=sigKPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	451.563232421875	2	451.289485	900.564418	-0.20331	-9.1752E-05	-0.18465	-8.3333E-05	-0.38797	-0.00017508	451.2893738282888	120.57	0.56377	119.23	119.03	119.6	-1.3452					13	10	2	0	0	0	0.027462	1	11375	11375		23.042	3.6825	1	15063			53234	33619;34025	44027	44064	57897	57897					0.11015832454006613
SIGTIGLIK	9	Unmodified	_SIGTIGLIK_					0	0	0		tr|A0A553SKI3|A0A553SKI3_NIACIRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=sigKPE=3SV=1;tr|A0A553SPB7|A0A553SPB7_NIACIRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=sigEPE=3SV=1	tr|A0A553SKI3|A0A553SKI3_NIACIRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=sigKPE=3SV=1;tr|A0A553SPB7|A0A553SPB7_NIACIRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=sigEPE=3SV=1	tr|A0A553SKI3|A0A553SKI3_NIACIRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=sigKPE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	451.289485	900.564418	1.8909	0.00085334	0.11242	5.0736E-05	2.0033	0.00090408	451.28947093324365	118.89	0.3804	118.89	118.67	119.05	0	-0.21725	0.00051738	NaN	27.882	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57094			53235	33619;34025	44027	44064							0.11015832454006613
SIGTIGLIK	9	Unmodified	_SIGTIGLIK_					0	0	0		tr|A0A553SKI3|A0A553SKI3_NIACIRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=sigKPE=3SV=1;tr|A0A553SPB7|A0A553SPB7_NIACIRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=sigEPE=3SV=1	tr|A0A553SKI3|A0A553SKI3_NIACIRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=sigKPE=3SV=1;tr|A0A553SPB7|A0A553SPB7_NIACIRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=sigEPE=3SV=1	tr|A0A553SKI3|A0A553SKI3_NIACIRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=sigKPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	451.289485	900.564418	0.62196	0.00028068	-0.9153	-0.00041306	-0.29334	-0.00013238	451.2891340138187	119.2	0.3933	119.02	118.81	119.2	-0.17137	-0.079587	-0.00041022	NaN	27.882	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8071.8			53236	33619;34025	44027	44064							0.11015832454006613
SIGTIGLIK	9	Unmodified	_SIGTIGLIK_					0	0	0		tr|A0A553SKI3|A0A553SKI3_NIACIRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=sigKPE=3SV=1;tr|A0A553SPB7|A0A553SPB7_NIACIRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=sigEPE=3SV=1	tr|A0A553SKI3|A0A553SKI3_NIACIRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=sigKPE=3SV=1;tr|A0A553SPB7|A0A553SPB7_NIACIRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=sigEPE=3SV=1	tr|A0A553SKI3|A0A553SKI3_NIACIRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=sigKPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	451.289485	900.564418	1.2196	0.00055041	-1.3188	-0.00059516	-0.099172	-4.4755E-05	451.28871592604014	120.3	0.44252	119.28	119.02	119.46	-1.0271	0.17408	-0.00077442	NaN	27.882	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17911			53237	33619;34025	44027	44064							0.11015832454006613
SIGVGEAPII	10	Unmodified	_SIGVGEAPII_					0	0	0			REV__ENSG00000170948|ENST00000595891|MBD3L1	REV__ENSG00000170948|ENST00000595891|MBD3L1	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.76141357421875	2	478.276575	954.538597	-1.3099	-0.00062649	2.9792	0.0014249	1.6693	0.00079841	478.27760335174304	53.936	1.2436	51.123	50.479	51.722	-2.8139					45	24	2	0	0	0	0.026752	1	3611	3611		44.117	9.9443	1	29224	+		53238	21581	44028	44065	57898	57898					0.0595093821170849
SIHGTLPRKK	10	Unmodified	_SIHGTLPRKK_					0	0	0		ENSG00000137936|ENST00000260502|BCAR3	ENSG00000137936|ENST00000260502|BCAR3	ENSG00000137936|ENST00000260502|BCAR3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	568.8250732421875	2	568.848564	1135.68258	-1.1375	-0.00064709	-2.492	-0.0014176	-3.6296	-0.0020647	568.8468854358289	125.71	5.0242	124.3	123.16	128.18	-1.4143					156	99	2	0	0	0	0.026681	1	12263	12263		62.107	26.489	1	36341			53239	4635	44029	44066	57899	57899					0.12016204762517191
SIHKTQQKKV	10	Unmodified	_SIHKTQQKKV_					0	0	0		ENST00000601837.1_1_19:40022087-40023442:-|nuORF	ENST00000601837.1_1_19:40022087-40023442:-|nuORF	ENST00000601837.1_1_19:40022087-40023442:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	599.3115234375	2	598.859129	1195.70371	0.24056	0.00014406	2.8633	0.0017147	3.1038	0.0018588	598.8605646250165	32.429	0.19957	32.429	32.303	32.503	0					6	3	2	0	0	0	0.026994	1	1410	1410		13.454	0	1	17668			53240	14233	44030	44067	57900	57900					0.11368170071364148
SIHLGGVFELQ	11	Unmodified	_SIHLGGVFELQ_					0	0	0		ENSG00000102245|ENST00000370629|CD40LG	ENSG00000102245|ENST00000370629|CD40LG	ENSG00000102245|ENST00000370629|CD40LG	MULTI-MSMS	OvCa9_classI_Rep4_	4	600.3232421875	2	600.324588	1198.63462	-2.8982	-0.0017399	0.96892	0.00058166	-1.9293	-0.0011582	600.3250269871453	152.11	1.1286	150.68	150.36	151.49	-1.435					68	24	4	0	0	0	0.71498	1	15089	15089		24.519	3.5723	1	134150			53241	2233	44031	44068	57901	57901					0.04325086051812832
SIHLKRLDLC	10	Unmodified	_SIHLKRLDLC_					0	0	0		ENST00000461710.5_1_20:31948117-31960625:-|nuORF	ENST00000461710.5_1_20:31948117-31960625:-|nuORF	ENST00000461710.5_1_20:31948117-31960625:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	599.3411865234375	2	599.342258	1196.66996	-0.11136	-6.6742E-05	-3.206	-0.0019215	-3.3174	-0.0019882	599.3401671033429	93.404	2.0597	90.897	90.463	92.522	-2.5072					90	42	4	0	0	0	0.55359	1	8178	8178		47.657	14.845	1	343780			53242	12182	44032	44069	57902	57902					0.0794942530797016
SIHLRNAK	8	Unmodified	_SIHLRNAK_					0	0	0			REV__tr|A0A7D6ZH07|A0A7D6ZH07_9CLOT[FeFe]hydrogenaseH-clustermaturationGTPaseHydFOS=ClostridiumintestinaleOX=36845GN=hydFPE=4SV=1	REV__tr|A0A7D6ZH07|A0A7D6ZH07_9CLOT[FeFe]hydrogenaseH-clustermaturationGTPaseHydFOS=ClostridiumintestinaleOX=36845GN=hydFPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	470.7551574707031	2	469.780151	937.545748	-0.4172	-0.00019599	0.2534	0.00011904	-0.1638	-7.6952E-05	469.78009604264986	59.34	1.1371	56.56	55.986	57.124	-2.7801					54	21	3	0	0	0	0.028476	1	4348	4348		35.618	7.736	1	125480	+		53243	32014	44033	44070	57903	57903					0.0744771560279105
SIHSFELDLL	10	Unmodified	_SIHSFELDLL_					0	0	0		ENSG00000213190|ENST00000368921|MLLT11	ENSG00000213190|ENST00000368921|MLLT11	ENSG00000213190|ENST00000368921|MLLT11	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.8049926757812	2	587.311146	1172.60774	0.82157	0.00048251	-1.0978	-0.00064476	-0.27625	-0.00016224	587.3116779970147	151.07	0.65933	151.07	150.79	151.45	0					17	12	2	0	0	0	0.026956	1	17723	17723		26.693	0	1	35507			53244	9121	44034	44071	57904	57904					0.028339774406276774
SIHSGPILPL	10	Unmodified	_SIHSGPILPL_					0	0	0			REV__ENSG00000205111|ENST00000699627|CDKL4	REV__ENSG00000205111|ENST00000699627|CDKL4	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.3043823242188	2	517.305667	1032.59678	-2.0458	-0.0010583	2.1992	0.0011377	0.15344	7.9376E-05	517.3066794823333	125.36	0.95676	123.94	123.62	124.58	-1.4143					43	18	3	0	0	0	0.59703	1	11918	11918		42.396	5.237	1	135080	+		53245	23203	44035	44072	57905	57905					0.08178619856994374
SIIDEDMLML	10	Unmodified	_SIIDEDMLML_					0	0	0			REV__nc|nan|Q9HD87|C6orf50	REV__nc|nan|Q9HD87|C6orf50	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.7587890625	2	590.285425	1178.5563	2.646	0.0015619	1.1293	0.00066659	3.7753	0.0022285	590.2859674651731	86.437	0.43909	86.437	86.113	86.553	0					14	10	2	0	0	0	0.026802	1	9109	9109		42.396	13.226	1	325140	+		53246	29243	44036	44073	57906	57906					-0.02583850639962293
SIIDLKEK	8	Unmodified	_SIIDLKEK_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	OvCa9_classI_Rep3	3	473.28265380859375	2	473.2844	944.554247	2.1277	0.001007	-2.3913	-0.0011317	-0.26356	-0.00012474	473.2832091121683	125.96	0.93475	124.91	124.63	125.57	-1.0519					30	17	2	0	0	0	0.58851	1	9830	9830		66.429	2.222	1	90622			53247	2975	44037	44074	57907	57907					0.07975224728761532
SIIDTPIIRT	10	Unmodified	_SIIDTPIIRT_					0	0	0			REV__ENSG00000107201|ENST00000379883|RIGI	REV__ENSG00000107201|ENST00000379883|RIGI	MULTI-MSMS	OvCa99_classI_Rep5	1	564.83642578125	2	564.834788	1127.65502	0.94911	0.00053609	1.3513	0.00076324	2.3004	0.0012993	564.835487174641	141.16	1.6048	141.16	140.78	142.39	0					81	31	4	0	0	0	0.53807	1	16475	16475		49.536	5.1589	1	1225700	+		53248	17837	44038	44075	57908	57908					0.0963025671160267
SIIEDKKVI	9	Unmodified	_SIIEDKKVI_					0	0	0		tr|A0A553SIF1|A0A553SIF1_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_14740PE=4SV=1	tr|A0A553SIF1|A0A553SIF1_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_14740PE=4SV=1	tr|A0A553SIF1|A0A553SIF1_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_14740PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.3015747070312	2	522.818607	1043.62266	0.90428	0.00047278	-1.3221	-0.00069124	-0.41786	-0.00021847	522.817805886111	85.195	0.87115	82.549	82.025	82.896	-2.6463					20	17	2	0	0	0	0.027453	1	7174	7174		37.812	13.609	1	26313			53249	33376	44039	44076	57909	57909					0.10259469308630287
SIIEDKKVI	9	Unmodified	_SIIEDKKVI_					0	0	0		tr|A0A553SIF1|A0A553SIF1_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_14740PE=4SV=1	tr|A0A553SIF1|A0A553SIF1_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_14740PE=4SV=1	tr|A0A553SIF1|A0A553SIF1_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_14740PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	522.818607	1043.62266	1.4794	0.00077346	0.44919	0.00023485	1.9286	0.0010083	522.8189395235541	82.885	0.25562	82.885	82.736	82.992	0	0.21463	0.00097916	NaN	45.972	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185770			53250	33376	44039	44076							0.10259469308630287
SIIEDKKVI	9	Unmodified	_SIIEDKKVI_					0	0	0		tr|A0A553SIF1|A0A553SIF1_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_14740PE=4SV=1	tr|A0A553SIF1|A0A553SIF1_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_14740PE=4SV=1	tr|A0A553SIF1|A0A553SIF1_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_14740PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	522.818607	1043.62266	-0.5436	-0.0002842	-2.0171	-0.0010546	-2.5607	-0.0013388	522.8177328217873	84.058	0.62473	82.511	82.172	82.797	-1.5462	-0.15945	-0.0015997	NaN	45.972	28	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23397			53251	33376	44039	44076							0.10259469308630287
SIIEDKKVI	9	Unmodified	_SIIEDKKVI_					0	0	0		tr|A0A553SIF1|A0A553SIF1_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_14740PE=4SV=1	tr|A0A553SIF1|A0A553SIF1_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_14740PE=4SV=1	tr|A0A553SIF1|A0A553SIF1_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_14740PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	522.818607	1043.62266	-1.2328	-0.00064455	-0.26065	-0.00013627	-1.4935	-0.00078082	522.8186503616907	84.958	0.78339	82.738	82.202	82.986	-2.2204	0.066839	0.00023692	NaN	45.972	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34891			53252	33376	44039	44076							0.10259469308630287
SIIEHQDL	8	Unmodified	_SIIEHQDL_					0	0	0		nc|ENSG00000176994|Q8TEV9-2|SMCR8;ENSG00000176994|ENST00000406438|SMCR8	nc|ENSG00000176994|Q8TEV9-2|SMCR8	nc|ENSG00000176994|Q8TEV9-2|SMCR8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.80926513671875	2	477.748182	953.481811	1.5008	0.00071699	-0.21351	-0.000102	1.2873	0.00061499	477.74750691392234	67.466	0.8834	63.975	63.739	64.622	-3.4902					38	17	3	0	0	0	0.028476	1	4930	4930		35.618	1.4457	1	56639			53253	7648	44040	44077	57910	57910					0.0032089065517766358
SIIEHQDL	8	Unmodified	_SIIEHQDL_					0	0	0		nc|ENSG00000176994|Q8TEV9-2|SMCR8;ENSG00000176994|ENST00000406438|SMCR8	nc|ENSG00000176994|Q8TEV9-2|SMCR8	nc|ENSG00000176994|Q8TEV9-2|SMCR8	MULTI-MATCH	OvCa9_classI_Rep2	2		2	477.748182	953.481811	-0.20443	-9.7666E-05	1.9333	0.00092364	1.7289	0.00082598	477.7484911517935	66.936	1.0421	64.275	63.751	64.793	-2.661	0.1497	0.0014618	NaN	40.778	22	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13992			53254	7648	44040	44077							0.0032089065517766358
SIIEILGRV	9	Unmodified	_SIIEILGRV_					0	0	0			REV__SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	REV__SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.3126525878906	2	500.313492	998.612431	1.0798	0.00054023	-1.5065	-0.0007537	-0.42668	-0.00021347	500.31266361849487	129.33	2.2681	127.88	127.55	129.81	-1.4565					119	45	5	0	0	0	0.37135	1	12503	12503		54.776	3.4409	1	1004600	+		53255	19883	44041	44078	57911	57911					0.11306906374045411
SIIENELQL	9	Unmodified	_SIIENELQL_					0	0	0			REV__tr|A0A7D6VX34|A0A7D6VX34_9CLOTDNA-protectingproteinDprAOS=ClostridiumintestinaleOX=36845GN=dprAPE=3SV=1	REV__tr|A0A7D6VX34|A0A7D6VX34_9CLOTDNA-protectingproteinDprAOS=ClostridiumintestinaleOX=36845GN=dprAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.8078002929688	2	529.790047	1057.56554	-2.0148	-0.0010674	-1.2486	-0.00066148	-3.2634	-0.0017289	529.7876439139005	119.96	0.44441	119.79	119.59	120.04	-0.17137					11	8	2	0	0	0	0.02715	1	11584	11584		112.41	0	1	8601.7	+		53256	31763	44042	44079	57912	57912					0.03906002032226752
SIIFNSHEL	9	Unmodified	_SIIFNSHEL_					0	0	0			REV__tr|A0A7D6ZS37|A0A7D6ZS37_9CLOTDUF1129familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06240PE=4SV=1	REV__tr|A0A7D6ZS37|A0A7D6ZS37_9CLOTDUF1129familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06240PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.8067016601562	2	530.277106	1058.53966	-0.8062	-0.00042751	0.78195	0.00041465	-0.024247	-1.2858E-05	530.2774242901385	122.16	0.76372	120.8	120.44	121.21	-1.3666					28	14	3	0	0	0	0.027453	1	11500	11500		45.972	13.16	1	33176	+		53257	32174	44043	44080	57913	57913					0.012731525806202626
SIIFNSHEL	9	Unmodified	_SIIFNSHEL_					0	0	0			REV__tr|A0A7D6ZS37|A0A7D6ZS37_9CLOTDUF1129familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06240PE=4SV=1	REV__tr|A0A7D6ZS37|A0A7D6ZS37_9CLOTDUF1129familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06240PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.277106	1058.53966	-1.6076	-0.00085248	1.627	0.00086275	0.019367	1.027E-05	530.2778524275934	121.02	0.59212	120.83	120.56	121.15	-0.19718	0.055966	0.0014225	NaN	45.972	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19681	+		53258	32174	44043	44080							0.012731525806202626
SIIFNSHEL	9	Unmodified	_SIIFNSHEL_					0	0	0			REV__tr|A0A7D6ZS37|A0A7D6ZS37_9CLOTDUF1129familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06240PE=4SV=1	REV__tr|A0A7D6ZS37|A0A7D6ZS37_9CLOTDUF1129familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06240PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	530.277106	1058.53966	1.3002	0.00068948	-1.483	-0.00078642	-0.18281	-9.6942E-05	530.2763330710454	121.72	0.57552	120.69	120.48	121.06	-1.0286	-0.08203	-0.0018759	NaN	45.972	17	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26197	+		53259	32174	44043	44080							0.012731525806202626
SIIGLPVILI	10	Unmodified	_SIIGLPVILI_					0	0	0		tr|A0A553SL06|A0A553SL06_NIACIStageIIsporulationproteinMOS=NialliacirculansOX=1397GN=spoIIMPE=4SV=1	tr|A0A553SL06|A0A553SL06_NIACIStageIIsporulationproteinMOS=NialliacirculansOX=1397GN=spoIIMPE=4SV=1	tr|A0A553SL06|A0A553SL06_NIACIStageIIsporulationproteinMOS=NialliacirculansOX=1397GN=spoIIMPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	519.3517456054688	2	519.352086	1036.68962	-0.61402	-0.00031889	0.42633	0.00022141	-0.1877	-9.7481E-05	519.3521262310679	135.52	2.0644	134.41	134.06	136.13	-1.1076					107	41	4	0	0	0	0.45225	1	10982	10982		60.972	3.1607	1	301720			53260	33672	44044	44081	57914	57914					0.1727412459038078
SIIGRLLEV	9	Unmodified	_SIIGRLLEV_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	OvCa99_classI_Rep5	1	500.3145446777344	2	500.313492	998.612431	1.6895	0.00084528	-0.26775	-0.00013396	1.4218	0.00071132	500.31339006354045	125.88	1.7414	125.88	125.57	127.32	0					117	37	5	0	0	0	0.017173	4	14557	14533;14557;14581;14655		150.36	37.951	1	17502000			53261	7303	44045	44082	57915;57916;57917;57918	57916					0.11306906374034043
SIIGRLLEV	9	Unmodified	_SIIGRLLEV_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	OvCa9_classI_Rep2	2	500.3143310546875	2	500.313492	998.612431	0.59332	0.00029685	-0.99705	-0.00049884	-0.40373	-0.00020199	500.3129079797688	127.44	1.7293	127.21	126.84	128.57	-0.2359					109	34	4	0	0	0	0.10421	11	12477	12447;12453;12459;12465;12471;12477;12483;12489;12495;12507;12539		96.034	21.266	1	1360100			53262	7303	44045	44082	57919;57920;57921;57922;57923;57924;57925;57926;57927;57928;57929	57924					0.11306906374034043
SIIGRLLEV	9	Unmodified	_SIIGRLLEV_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	OvCa9_classI_Rep3	3	500.3128356933594	2	500.313492	998.612431	0.37155	0.00018589	-0.7555	-0.00037799	-0.38395	-0.00019209	500.31302313941114	128.99	2.6573	127.9	127.57	130.22	-1.0933					135	53	5	0	0	0	0.066102	13	10180	10158;10162;10174;10180;10198;10210;10223;10230;10236;10243;10249;10255;10279		109.48	35.223	1	747300			53263	7303	44045	44082	57930;57931;57932;57933;57934;57935;57936;57937;57938;57939;57940;57941;57942	57933					0.11306906374034043
SIIGRLLEV	9	Unmodified	_SIIGRLLEV_					0	0	0		ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	ENSG00000172531|ENST00000376745|PPP1CA	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.31268310546875	2	500.313492	998.612431	1.0798	0.00054023	-1.5065	-0.0007537	-0.42668	-0.00021347	500.31266361849487	129.33	2.2681	127.88	127.55	129.81	-1.4565					119	45	5	0	0	0	0.10421	3	12394	12370;12394;12443		96.034	10.873	1	1004600			53264	7303	44045	44082	57943;57944;57945	57944					0.11306906374034043
SIIIAIATGA	10	Unmodified	_SIIIAIATGA_					0	0	0			REV__tr|A0A553SN81|A0A553SN81_NIACIQacEfamilyquaternaryammoniumcompoundeffluxSMRtransporterOS=NialliacirculansOX=1397GN=CEQ21_23940PE=3SV=1	REV__tr|A0A553SN81|A0A553SN81_NIACIQacEfamilyquaternaryammoniumcompoundeffluxSMRtransporterOS=NialliacirculansOX=1397GN=CEQ21_23940PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	465.28704833984375	2	465.286943	928.559333	0.40865	0.00019014	-0.89022	-0.00041421	-0.48157	-0.00022407	465.2865075151942	125.02	3.4561	124.79	124.42	127.87	-0.2359					183	69	5	0	0	0	0.53885	1	12281	12281		49.442	6.5773	1	4060300	+		53265	30399	44046	44083	57946	57946					0.09219528591370363
SIIIHFLLY	9	Unmodified	_SIIIHFLLY_					0	0	0			REV__chr20:49135931-49143854|113|13.45|0.47|4.83|-|2|TE_info:Looper,Looper_dup505,PiggyBac,DNA,donor,-,49143854,49145139|STAU1,None|7	REV__chr20:49135931-49143854|113|13.45|0.47|4.83|-|2|TE_info:Looper,Looper_dup505,PiggyBac,DNA,donor,-,49143854,49145139|STAU1,None|7	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.8175048828125	2	559.83406	1117.65357	2.4738	0.0013849	-0.90737	-0.00050798	1.5664	0.00087692	559.8333214346951	134.19	0.74979	134.19	133.77	134.52	0					40	15	4	0	0	0	0.027408	1	15578	15578		57.811	10.154	1	372430	+		53266	16022	44047	44084	57947	57947					0.09944667413515162
SIIIILNFSN	10	Unmodified	_SIIIILNFSN_					0	0	0			REV__tr|A0A7D7AFG1|A0A7D7AFG1_9CLOTLipidIIflippaseAmjOS=ClostridiumintestinaleOX=36845GN=amjPE=3SV=1	REV__tr|A0A7D7AFG1|A0A7D7AFG1_9CLOTLipidIIflippaseAmjOS=ClostridiumintestinaleOX=36845GN=amjPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3297729492188	2	567.331882	1132.64921	-3.474	-0.0019709	-0.21845	-0.00012393	-3.6925	-0.0020949	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.71173	1	12079	12079		29.17	0.020503	1	458690	+		53267	32714	44048	44085	57948	57948					0.0881915819995811
SIIKPVQVK	9	Unmodified	_SIIKPVQVK_					0	0	0			REV__nc|ENSG00000126838|P20742-2|PZP	REV__nc|ENSG00000126838|P20742-2|PZP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3090515136719	2	506.331685	1010.64882	-0.11427	-5.7858E-05	-0.32646	-0.0001653	-0.44073	-0.00022316	506.3315397820294	47.971	0.60997	44.863	44.531	45.141	-3.1077					17	11	2	0	0	0	0.027462	1	2636	2636		24.519	4.5224	1	20520	+		53268	28835	44049	44086	57949	57949					0.14391783270752967
SIIKYKVLE	9	Unmodified	_SIIKYKVLE_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-MSMS	OvCa99_classI_Rep5	1	546.8372192382812	2	546.8368	1091.65905	-0.48123	-0.00026316	-2.2676	-0.00124	-2.7489	-0.0015032	546.8354871258746	55.936	0.93896	55.936	55.599	56.538	0					53	22	4	0	0	0	0.38969	1	4607	4607		52.937	15.125	1	2463800	+		53269	21079	44050	44087	57950	57950					0.11688346205346534
SIIMPAYII	9	Unmodified	_SIIMPAYII_					0	0	0		tr|A0A553SJC6|A0A553SJC6_NIACIMMPLfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_16535PE=3SV=1	tr|A0A553SJC6|A0A553SJC6_NIACIMMPLfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_16535PE=3SV=1	tr|A0A553SJC6|A0A553SJC6_NIACIMMPLfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_16535PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.806884765625	2	510.793546	1019.57254	-0.70777	-0.00036152	-1.9223	-0.00098188	-2.63	-0.0013434	510.7931038000254	99.124	0.24861	98.231	98.156	98.405	-0.89305					6	4	2	0	0	0	0.027462	1	9021	9021		31.955	6.5047	1	13390			53270	33490	44051	44088	57951	57951					0.06353643379100049
SIIMPAYII	9	Unmodified	_SIIMPAYII_					0	0	0		tr|A0A553SJC6|A0A553SJC6_NIACIMMPLfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_16535PE=3SV=1	tr|A0A553SJC6|A0A553SJC6_NIACIMMPLfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_16535PE=3SV=1	tr|A0A553SJC6|A0A553SJC6_NIACIMMPLfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_16535PE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	510.793546	1019.57254	1.8394	0.00093954	-2.3811	-0.0012162	-0.5417	-0.0002767	510.7946366642837	98.099	0.16896	98.099	98.037	98.206	0	-0.065764	-3.4274E-05	NaN	31.955	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67381			53271	33490	44051	44088							0.06353643379100049
SIINPKNPK	9	Unmodified	_SIINPKNPK_					0	0	0		nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.7934265136719	2	505.803291	1009.59203	0.75235	0.00038054	-3.8667	-0.0019558	-3.1143	-0.0015752	505.80168650102206	86.651	0.63692	84.024	83.812	84.448	-2.6269					20	12	3	0	0	0	0.02744	1	7360	7360		44.377	7.9304	1	41092			53272	14875;1210	44052	44089	57952	57952					0.08761735714222141
SIINPKNPK	9	Unmodified	_SIINPKNPK_					0	0	0		nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B	nc|ENSG00000054523|O60333-3|KIF1B	MULTI-MATCH	OvCa9_classI_Rep3	3		2	505.803291	1009.59203	-1.6061	-0.00081237	0.015776	7.9794E-06	-1.5903	-0.00080439	505.80369724983774	86.251	0.70177	84.031	83.735	84.437	-2.2204	0.0031545	0.0013886	NaN	44.377	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37769			53273	14875;1210	44052	44089							0.08761735714222141
SIINYSNLL	9	Unmodified	_SIINYSNLL_					0	0	0			REV__tr|A0A7D6VQB6|A0A7D6VQB6_9CLOTAlanine--glyoxylateaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02360PE=3SV=1	REV__tr|A0A7D6VQB6|A0A7D6VQB6_9CLOTAlanine--glyoxylateaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02360PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.8281860351562	2	518.787307	1035.56006	-0.023612	-1.225E-05	1.6523	0.00085721	1.6287	0.00084496	519.2901221083605	123.1	0.24797	121.73	121.65	121.9	-1.3666					5	4	2	0	0	0	0.027017	1	11646	11646		93.195	28.988	1	6383.6	+		53274	31311	44053	44090	57953	57953					0.04370323240414109
SIIPQQKALP	10	Unmodified	_SIIPQQKALP_					0	0	0			REV__ENSG00000118217|ENST00000367942|ATF6	REV__ENSG00000118217|ENST00000367942|ATF6	MULTI-MSMS	OvCa9_classI_Rep3	3	547.8261108398438	2	547.832049	1093.64954	-6.0457	-0.003312	-4.2018	-0.0023019	-10.248	-0.0056139	547.8295905768617	154.78	1.79	153.77	152.92	154.71	-1.0076					93	40	3	0	0	0	0.53885	1	13259	13259		49.442	3.4693	1	69775	+		53275	18385	44054	44091	57954	57954					0.10646577919806077
SIIQFFVTI	9	Unmodified	_SIIQFFVTI_					0	0	0		tr|A0A553SFT6|A0A553SFT6_NIACIYhgE/Pipdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09460PE=4SV=1	tr|A0A553SFT6|A0A553SFT6_NIACIYhgE/Pipdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09460PE=4SV=1	tr|A0A553SFT6|A0A553SFT6_NIACIYhgE/Pipdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09460PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	534.3110961914062	2	534.310418	1066.60628	-0.66808	-0.00035696	1.1138	0.00059514	0.44577	0.00023818	534.3108662098824	124.05	1.2329	123.82	123.34	124.57	-0.23193					58	24	4	0	0	0	0.46356	1	12061	12061		45.972	0	1	92890			53276	33075	44055	44092	57955	57955					0.07564388142532152
SIIQRLLEV	9	Unmodified	_SIIQRLLEV_					0	0	0		nc|ENSG00000186298|P36873-2|PPP1CC;ENSG00000186298|ENST00000335007|PPP1CC;PPP1CC|p.D71Vfs*43|1|0.28|ENSG00000186298|chr12:110730735-110730736|-/TA|frameshift_variant	nc|ENSG00000186298|P36873-2|PPP1CC	nc|ENSG00000186298|P36873-2|PPP1CC	MULTI-MSMS	OvCa99_classI_Rep5	1	535.8328857421875	2	535.832049	1069.64954	1.5895	0.00085172	0.681	0.0003649	2.2705	0.0012166	535.8324142120423	130.15	0.85739	130.15	129.82	130.68	0					40	17	3	0	0	0	0.18887	1	15093	15093		78.264	20.453	1	227630			53277	8328	44056	44093	57956	57956					0.11750577919792704
SIITFPTKR	9	Unmodified	_SIITFPTKR_					0	0	0			REV__ENST00000342506.2_1_2:197672156-197673984:-|nuORF	REV__ENST00000342506.2_1_2:197672156-197673984:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8173217773438	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.69403	1	13952	13952		19.997	0	1	166960	+		53278	24650	44057	44094	57957	57957					0.09498308748334239
SIIVNKHIY	9	Unmodified	_SIIVNKHIY_					0	0	0		tr|A0A553SQ02|A0A553SQ02_NIACICyclicpyranopterinmonophosphatesynthaseOS=NialliacirculansOX=1397GN=moaCPE=3SV=1	tr|A0A553SQ02|A0A553SQ02_NIACICyclicpyranopterinmonophosphatesynthaseOS=NialliacirculansOX=1397GN=moaCPE=3SV=1	tr|A0A553SQ02|A0A553SQ02_NIACICyclicpyranopterinmonophosphatesynthaseOS=NialliacirculansOX=1397GN=moaCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	543.817626953125	2	543.818941	1085.62333	-1.415	-0.00076952	0.57994	0.00031538	-0.83509	-0.00045414	543.8193248422483	102.3	1.5803	101.62	101.24	102.82	-0.68459					104	31	5	0	0	0	0.29717	1	9405	9405		63.306	15.649	1	1306500			53279	34100	44058	44095	57958	57958					0.08394308748324875
SIIVNKHIY	9	Unmodified	_SIIVNKHIY_					0	0	0		tr|A0A553SQ02|A0A553SQ02_NIACICyclicpyranopterinmonophosphatesynthaseOS=NialliacirculansOX=1397GN=moaCPE=3SV=1	tr|A0A553SQ02|A0A553SQ02_NIACICyclicpyranopterinmonophosphatesynthaseOS=NialliacirculansOX=1397GN=moaCPE=3SV=1	tr|A0A553SQ02|A0A553SQ02_NIACICyclicpyranopterinmonophosphatesynthaseOS=NialliacirculansOX=1397GN=moaCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	543.820068359375	2	543.818941	1085.62333	-0.007374	-4.0101E-06	-0.95373	-0.00051865	-0.9611	-0.00052267	543.8184281162435	103.22	1.4687	101.79	101.45	102.92	-1.4347					92	27	4	0	0	0	0.36502	1	7160	7160		55.504	6.0627	1	1651100			53280	34100	44058	44095	57959	57959					0.08394308748324875
SIIVNKHIY	9	Unmodified	_SIIVNKHIY_					0	0	0		tr|A0A553SQ02|A0A553SQ02_NIACICyclicpyranopterinmonophosphatesynthaseOS=NialliacirculansOX=1397GN=moaCPE=3SV=1	tr|A0A553SQ02|A0A553SQ02_NIACICyclicpyranopterinmonophosphatesynthaseOS=NialliacirculansOX=1397GN=moaCPE=3SV=1	tr|A0A553SQ02|A0A553SQ02_NIACICyclicpyranopterinmonophosphatesynthaseOS=NialliacirculansOX=1397GN=moaCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.818603515625	2	543.818941	1085.62333	-1.0476	-0.0005697	0.4417	0.0002402	-0.6059	-0.0003295	543.8192276601923	103.89	1.4672	101.77	101.43	102.9	-2.1192					89	27	4	0	0	0	0.34496	1	9417	9417		57.811	6.6186	1	1545600			53281	34100	44058	44095	57960	57960					0.08394308748324875
SIIVQFRYINK	11	Unmodified	_SIIVQFRYINK_					0	0	0		ENSG00000170113|ENST00000337435|NIPA1;nc|ENSG00000170113|Q7RTP0-2|NIPA1	ENSG00000170113|ENST00000337435|NIPA1	ENSG00000170113|ENST00000337435|NIPA1	MULTI-MSMS	OvCa9_classI_Rep3	3	460.9399719238281	3	460.938117	1379.79252	0.99121	0.00045688	3.9501	0.0018208	4.9413	0.0022777	460.939931944109	66.339	1.2721	63.393	62.959	64.231	-2.9459					62	24	4	0	0	0	0.72458	1	2713	2713		21.032	0.71722	1	124720			53282	7074	44059	44096	57961	57961					0.11781585311041454
SIKAPVSFFD	10	Unmodified	_SIKAPVSFFD_					0	0	0			REV__tr|A0A553SSA8|A0A553SSA8_NIACIAcetolactatesynthaseAlsSOS=NialliacirculansOX=1397GN=alsSPE=3SV=1	REV__tr|A0A553SSA8|A0A553SSA8_NIACIAcetolactatesynthaseAlsSOS=NialliacirculansOX=1397GN=alsSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.794189453125	2	555.795132	1109.57571	-0.25492	-0.00014168	-3.5262	-0.0019598	-3.7811	-0.0021015	555.793119473527	46.113	1.1898	43.04	42.824	44.014	-3.0724					62	22	4	0	0	0	0.42962	1	2393	2393		64.207	5.4253	1	475930	+		53283	30817	44060	44097	57962	57962					0.0253060975749122
SIKAPVSFFD	10	Unmodified	_SIKAPVSFFD_					0	0	0			REV__tr|A0A553SSA8|A0A553SSA8_NIACIAcetolactatesynthaseAlsSOS=NialliacirculansOX=1397GN=alsSPE=3SV=1	REV__tr|A0A553SSA8|A0A553SSA8_NIACIAcetolactatesynthaseAlsSOS=NialliacirculansOX=1397GN=alsSPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	555.795132	1109.57571	0.39072	0.00021716	-4.3251	-0.0024039	-3.9344	-0.0021867	555.7925357116011	45.83	1.0963	43.12	42.897	43.993	-2.7097	0.04004	-0.00060863	NaN	64.207	39	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112750	+		53284	30817	44060	44097							0.0253060975749122
SIKASFYDR	9	Unmodified	_SIKASFYDR_					0	0	0		tr|A0A553SJZ9|A0A553SJZ9_NIACIGlutathionehydrolaseproenzymeOS=NialliacirculansOX=1397GN=ggtPE=3SV=1	tr|A0A553SJZ9|A0A553SJZ9_NIACIGlutathionehydrolaseproenzymeOS=NialliacirculansOX=1397GN=ggtPE=3SV=1	tr|A0A553SJZ9|A0A553SJZ9_NIACIGlutathionehydrolaseproenzymeOS=NialliacirculansOX=1397GN=ggtPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	543.7832641601562	2	543.782556	1085.55056	3.0779	0.0016737	1.3172	0.00071625	4.3951	0.00239	543.7830319405656	25.519	0.84649	22.81	22.529	23.376	-2.7097					31	19	2	0	0	0	0.69403	1	276	276		19.997	0.6368	1	19803			53285	33561	44061	44098	57963	57963					0.011205549548776617
SIKAYPLN	8	Unmodified	_SIKAYPLN_					0	0	0			REV__tr|A0A7D6ZSE6|A0A7D6ZSE6_9CLOTMethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metHPE=3SV=1	REV__tr|A0A7D6ZSE6|A0A7D6ZSE6_9CLOTMethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metHPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	453.2594299316406	2	453.258185	904.501818	0.065973	2.9903E-05	-0.85874	-0.00038923	-0.79277	-0.00035933	453.257892988682	79.853	1.4109	77.102	76.797	78.208	-2.7514					83	28	5	0	0	0	0.68714	1	6514	6514		45.952	1.8352	1	370320	+		53286	32182	44062	44099	57964	57964					0.045746863857857534
SIKDCERT	8	Unmodified	_SIKDCERT_					0	0	0		tr|A0A7D6VNB2|A0A7D6VNB2_9CLOTFapAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17085PE=4SV=1	tr|A0A7D6VNB2|A0A7D6VNB2_9CLOTFapAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17085PE=4SV=1	tr|A0A7D6VNB2|A0A7D6VNB2_9CLOTFapAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17085PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	476.23382568359375	2	476.231842	950.44913	1.4618	0.00069617	1.7547	0.00083565	3.2165	0.0015318	476.23247441347297	101.29	1.2246	101.29	100.86	102.08	0					72	28	3	0	0	0	0.26545	1	11269	11269		113.41	6.4041	1	2509600			53287	34689	44063	44100	57965	57965					-0.02807639739330625
SIKDYELQL	9	Unmodified	_SIKDYELQL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP;DSP|p.R1308Pfs*18|1|0.56|ENSG00000096696|chr6:7580109-7580110|-/C|frameshift_variant;DSP|p.R1725Qfs*9|1|0.06|ENSG00000096696|chr6:7581363-7581364|-/A|frameshift_variant	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OvCa99_classI_Rep5	1	555.2994384765625	2	554.797872	1107.58119	1.1342	0.00062923	-0.53504	-0.00029684	0.59913	0.00033239	555.2995795682372	156.54	0.6055	156.54	156.19	156.8	0					13	11	2	0	0	0	0.50149	1	18371	18371		42.396	4.5846	1	14668			53288	1949	44064	44101	57966	57966					0.031702885492677524
SIKENTLLK	9	Unmodified	_SIKENTLLK_					0	0	0		nc|ENSG00000180881|Q9BXY5-3|CAPS2;ENST00000409004.5_1_12:75670025-75710066:-|nuORF;nc|ENSG00000180881|Q9BXY5-2|CAPS2;nc|ENSG00000180881|Q9BXY5|CAPS2;ENSG00000180881|ENST00000699294|CAPS2;nc|ENSG00000180881|Q9BXY5-5|CAPS2	nc|ENSG00000180881|Q9BXY5-3|CAPS2	nc|ENSG00000180881|Q9BXY5-3|CAPS2	MSMS	OvCa99_classI_Rep5	1	523.3163452148438	2	523.316232	1044.61791	NaN	NaN	NaN	NaN	NaN	NaN	NaN	34.461	1	34.461	33.961	34.961	0								0	0	0	0.1756	1	1664	1664		40.778	2.9666	1				53289	7894	44065	44102	57967	57967					0.09738585165860059
SIKESKKDRL	10	Unmodified	_SIKESKKDRL_					0	0	0			REV__tr|A0A7D6ZYR3|A0A7D6ZYR3_9CLOTTransglutaminasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17350PE=4SV=1	REV__tr|A0A7D6ZYR3|A0A7D6ZYR3_9CLOTTransglutaminasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17350PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.54913330078125	3	401.906705	1202.69829	1.5492	0.00062263	2.4657	0.00099098	4.0149	0.0016136	401.90763226370086	46.4	0.61078	46.4	46.198	46.809	0					23	13	3	0	0	0	0.026819	1	3317	3317		42.338	23.807	1	169340	+		53290	32386	44066	44103	57968	57968					0.10504446488880603
SIKGRPPSP	9	Unmodified	_SIKGRPPSP_					0	0	0			REV__ENSG00000100813|ENST00000605057|ACIN1	REV__ENSG00000100813|ENST00000605057|ACIN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.7561950683594	2	469.774534	937.534515	0.75335	0.00035391	-1.3151	-0.00061779	-0.56171	-0.00026388	469.7738293471713	60.517	1.0457	57.087	56.848	57.894	-3.43					26	20	2	0	0	0	0.027462	1	4077	4077		37.812	12.237	1	56425	+		53291	17453	44067	44104	57969	57969					0.06324893508644891
SIKIKKTCGF	10	Unmodified	_SIKIKKTCGF_					0	0	0			REV__DNAJB13|p.L230Hfs*25|1|0.1|ENSG00000187726|chr11:73968426-73968427|-/A|frameshift_variant	REV__DNAJB13|p.L230Hfs*25|1|0.1|ENSG00000187726|chr11:73968426-73968427|-/A|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.8150024414062	2	562.828452	1123.64235	1.7562	0.00098845	2.6041	0.0014656	4.3603	0.0024541	562.8301825002234	143.55	0.19922	143.55	143.41	143.61	0					5	3	2	0	0	0	0.026891	1	16765	16765		47.657	5.2612	1	12595	+		53292	16317	44068	44105	57970	57970					0.0854752204770648
SIKIMDNID	9	Unmodified	_SIKIMDNID_					0	0	0		tr|A0A7D6VN24|A0A7D6VN24_9CLOTDUF3784domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14035PE=4SV=1	tr|A0A7D6VN24|A0A7D6VN24_9CLOTDUF3784domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14035PE=4SV=1	tr|A0A7D6VN24|A0A7D6VN24_9CLOTDUF3784domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14035PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.3146362304688	2	524.7708	1047.52705	1.2102	0.00063506	-0.73827	-0.00038742	0.47189	0.00024764	524.7700336627704	122.99	0.27689	122.99	122.81	123.09	0					7	5	2	0	0	0	0.027461	1	14167	14167		49.442	16.629	1	26724			53293	34676	44069	44106	57971	57971					0.005183731260558488
SIKIPSSHTL	10	Unmodified	_SIKIPSSHTL_					0	0	0		nc|ENSG00000120659|O14788-2|TNFSF11;nc|ENSG00000120659|O14788-3|TNFSF11;ENSG00000120659|ENST00000398795|TNFSF11	nc|ENSG00000120659|O14788-2|TNFSF11	nc|ENSG00000120659|O14788-2|TNFSF11	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.7990112304688	2	541.813856	1081.61316	-0.92753	-0.00050255	-1.5962	-0.00086487	-2.5238	-0.0013674	541.8129651453237	74.488	0.72506	71.258	71.095	71.82	-3.2308					25	14	2	0	0	0	0.027033	1	5889	5889		27.047	0	1	64079			53294	3440	44070	44107	57972	57972					0.07561701023087153
SIKITGLRP	9	Unmodified	_SIKITGLRP_					0	0	0		tr|A0A553SQV1|A0A553SQV1_NIACIATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_07280PE=4SV=1	tr|A0A553SQV1|A0A553SQV1_NIACIATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_07280PE=4SV=1	tr|A0A553SQV1|A0A553SQV1_NIACIATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_07280PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.7659606933594	2	492.813659	983.612765	0.18874	9.3013E-05	-0.86037	-0.000424	-0.67163	-0.00033099	492.81327970776596	67.101	1.6306	64.44	64.049	65.68	-2.661					81	32	4	0	0	0	0.027453	1	5247	5247		23.523	0	1	173670			53295	34201	44071	44108	57973	57973					0.12030326093895383
SIKKKYSEAF	10	Unmodified	_SIKKKYSEAF_					0	0	0			REV__ENSG00000100558|ENST00000216446|PLEK2	REV__ENSG00000100558|ENST00000216446|PLEK2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	401.7381591796875	3	400.892284	1199.65502	1.8918	0.0007584	-1.7558	-0.00070388	0.136	5.4521E-05	400.891420304459	63.42	3.2989	59.945	58.649	61.948	-3.475					161	67	3	0	0	0	0.026915	1	4537	4537		14.694	4.1069	1	196330	+		53296	17429	44072	44109	57974	57974					0.06318256711597314
SIKKKYSEAF	10	Unmodified	_SIKKKYSEAF_					0	0	0			REV__ENSG00000100558|ENST00000216446|PLEK2	REV__ENSG00000100558|ENST00000216446|PLEK2	MULTI-MATCH	OvCa9_classI_Rep2	2		3	400.892284	1199.65502	0.033427	1.34E-05	0.42087	0.00016872	0.4543	0.00018213	400.8922876056512	62.688	2.8912	59.943	58.687	61.579	-2.7444	-0.024359	0.0010673	NaN	20.03	120	55	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60040	+		53297	17429	44072	44109							0.06318256711597314
SIKKLSKLT	9	Unmodified	_SIKKLSKLT_					0	0	0		KAT6A|p.F1751Lfs*32|1|0.04|ENSG00000083168|chr8:41932967-41932968|-/CATAGGCTGCTGGGTATAGGCCTGGCTCCCC|frameshift_variant;ENSG00000083168|ENST00000265713|KAT6A	KAT6A|p.F1751Lfs*32|1|0.04|ENSG00000083168|chr8:41932967-41932968|-/CATAGGCTGCTGGGTATAGGCCTGGCTCCCC|frameshift_variant	KAT6A|p.F1751Lfs*32|1|0.04|ENSG00000083168|chr8:41932967-41932968|-/CATAGGCTGCTGGGTATAGGCCTGGCTCCCC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.8199462890625	2	509.336967	1016.65938	2.0457	0.001042	-1.0042	-0.00051148	1.0415	0.00053048	509.83862642202695	82.863	0.16776	82.863	82.781	82.949	0					5	3	2	0	0	0	0.027462	1	8600	8600		15.642	0	1	102680			53298	1688	44073	44110	57975	57975					0.1517176592517444
SIKKRRIE	8	Unmodified	_SIKKRRIE_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-6|BLTP1	REV__nc|ENSG00000138688|Q2LD37-6|BLTP1	MULTI-SECPEP	OvCa9_classI_Rep3	3	514.8103637695312	2	515.330008	1028.64546	0.23851	0.00012291	1.1567	0.00059607	1.3952	0.00071898	515.3307561262769	115.12	0.39478	114.07	113.9	114.29	-1.055					10	7	2	0	0	0	0.028476	1	8519	8519		20.947	6.0821	1	8397.2	+		53299	28886	44074	44111	57976	57976					0.1322853321673847
SIKNNLYHV	9	Unmodified	_SIKNNLYHV_					0	0	0			REV__tr|A0A553SM92|A0A553SM92_NIACIBhproteinOS=NialliacirculansOX=1397GN=CEQ21_22135PE=4SV=1	REV__tr|A0A553SM92|A0A553SM92_NIACIBhproteinOS=NialliacirculansOX=1397GN=CEQ21_22135PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8567504882812	2	544.298373	1086.58219	1.1471	0.00062436	-0.96174	-0.00052347	0.18535	0.00010089	544.2977704428556	145.34	0.9406	145.34	144.99	145.93	0					31	19	2	0	0	0	0.027462	1	17020	17020		29.15	10.887	1	44478	+		53300	30308	44075	44112	57977	57977					0.042365477088424086
SIKQFKSPK	9	Unmodified	_SIKQFKSPK_					0	0	0			REV__ENST00000414296.2_1_7:29736649-29749689:+|nuORF	REV__ENST00000414296.2_1_7:29736649-29749689:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.7852783203125	2	531.818941	1061.62333	-1.0709	-0.00056953	1.0955	0.00058261	0.024604	1.3085E-05	531.8192575580337	74.85	0.91715	71.619	71.385	72.302	-3.2308					37	18	3	0	0	0	0.027462	1	5861	5861		36.447	12.244	1	107190	+		53301	25518	44076	44113	57978	57978					0.09498308748334239
SIKSSCYGLLI	11	Carbamidomethyl (C)	_SIKSSC(Carbamidomethyl (C))YGLLI_	SIKSSC(1)YGLLI		SIKSSC(85)YGLLI		0	1	0			REV__tr|A0A7D6VNF4|A0A7D6VNF4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17625PE=4SV=1	REV__tr|A0A7D6VNF4|A0A7D6VNF4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17625PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	620.83349609375	2	620.833931	1239.65331	0.44046	0.00027346	-4.0935	-0.0025414	-3.653	-0.0022679	620.8312978527068	99.854	3.421	98.169	97.777	101.2	-1.685					160	66	5	0	0	0	0.16138	1	6762	6762		85.161	15.533	1	2228000	+		53302	31178	44077	44114	57979	57979	370				0.043068796313491475
SIKVSAITSKG	11	Unmodified	_SIKVSAITSKG_					0	0	0		tr|A0A7D7AGF8|A0A7D7AGF8_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_08595PE=4SV=1	tr|A0A7D7AGF8|A0A7D7AGF8_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_08595PE=4SV=1	tr|A0A7D7AGF8|A0A7D7AGF8_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_08595PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.3029174804688	2	545.826963	1089.63937	-0.21378	-0.00011669	-3.4969	-0.0019087	-3.7106	-0.0020254	546.3266417881518	115.89	0.44489	114.5	114.22	114.67	-1.3932					13	8	2	0	0	0	0.025344	1	10792	10792		20.837	0	1	10452			53303	36263	44078	44115	57980	57980					0.09813970194545618
SIKVSVDGFR	10	Unmodified	_SIKVSVDGFR_					0	0	0			REV__nc|ENSG00000162775|Q96T37-3|RBM15	REV__nc|ENSG00000162775|Q96T37-3|RBM15	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.8291015625	2	554.31148	1106.60841	-0.028633	-1.5872E-05	-0.7908	-0.00043835	-0.81943	-0.00045422	554.3109740019485	60.549	0.62881	60.549	60.314	60.943	0					27	14	3	0	0	0	0.026931	1	5258	5258		30.318	16.542	1	640880	+		53304	28963	44079	44116	57981	57981					0.05936816880330298
SILDKLHVGL	10	Unmodified	_SILDKLHVGL_					0	0	0			REV__nc|ENSG00000172575|O95267-4|RASGRP1	REV__nc|ENSG00000172575|O95267-4|RASGRP1	MULTI-MSMS	OvCa9_classI_Rep3	3	547.826904296875	2	547.832049	1093.64954	-6.0457	-0.003312	-4.2018	-0.0023019	-10.248	-0.0056139	547.8295905768617	154.78	1.79	153.77	152.92	154.71	-1.0076					93	40	3	0	0	0	0.60504	1	13265	13265		41.427	11.109	1	69775	+		53305	21712	44080	44117	57982	57982					0.10646577919806077
SILEDRGLI	9	Unmodified	_SILEDRGLI_					0	0	0		ENST00000573523.5_1_17:4574736-4578861:-|nuORF	ENST00000573523.5_1_17:4574736-4578861:-|nuORF	ENST00000573523.5_1_17:4574736-4578861:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	508.2912902832031	2	508.292756	1014.57096	-0.9868	-0.00050158	0.71941	0.00036567	-0.26739	-0.00013591	508.29294653313184	116.44	1.3851	115.39	115.05	116.43	-1.0414					64	27	4	0	0	0	0.24951	1	8694	8694		68.787	0.30212	1	264190			53306	13918	44081	44118	57983	57983					0.06425725614712974
SILEHQIQV	9	Unmodified	_SILEHQIQV_					0	0	0		ENSG00000104738|ENST00000649973|MCM4;MCM4|p.A741Lfs*8|1|0.32|ENSG00000104738|chr8:47974817-47974818|-/TT|frameshift_variant	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	OvCa9_classI_Rep2	2	533.798828125	2	533.798206	1065.58186	0.8002	0.00042714	-1.1375	-0.00060719	-0.33728	-0.00018004	533.7975428784964	89.508	1.2373	88.206	87.889	89.126	-1.302					58	24	3	0	0	0	0.059253	3	7891	7877;7891;7897		113.41	25.657	1	611080			53307	2389	44082	44119	57984;57985;57986	57985					0.05169127988983746
SILEHQIQV	9	Unmodified	_SILEHQIQV_					0	0	0		ENSG00000104738|ENST00000649973|MCM4;MCM4|p.A741Lfs*8|1|0.32|ENSG00000104738|chr8:47974817-47974818|-/TT|frameshift_variant	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	OvCa9_classI_Rep3	3	533.7996215820312	2	533.798206	1065.58186	0.021126	1.1277E-05	-0.48247	-0.00025754	-0.46134	-0.00024626	533.7979069627187	90.264	1.6778	88.184	87.85	89.528	-2.0805					67	32	3	0	0	0	0.070405	1	5594	5594		107.01	8.3781	1	880630			53308	2389	44082	44119	57987	57987					0.05169127988983746
SILEHQIQV	9	Unmodified	_SILEHQIQV_					0	0	0		ENSG00000104738|ENST00000649973|MCM4;MCM4|p.A741Lfs*8|1|0.32|ENSG00000104738|chr8:47974817-47974818|-/TT|frameshift_variant	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	533.798206	1065.58186	-1.0397	-0.00055499	0.67505	0.00036034	-0.36464	-0.00019464	533.7984754354773	90.675	1.3779	88.099	87.801	89.179	-2.575	-0.060461	0.0014354	NaN	113.41	59	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	710410			53309	2389	44082	44119							0.05169127988983746
SILFRFLQKN	10	Unmodified	_SILFRFLQKN_					0	0	0		ENST00000344204.8_1_5:14508704-14508824:+|nuORF	ENST00000344204.8_1_5:14508704-14508824:+|nuORF	ENST00000344204.8_1_5:14508704-14508824:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3697509765625	2	633.371872	1264.72919	-4.8823	-0.0030923	0.81247	0.0005146	-4.0699	-0.0025777	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.75313	1	13008	13008		24.519	0	1	765700			53310	10610	44083	44120	57988	57988					0.10741644593804267
SILFVATT	8	Unmodified	_SILFVATT_					0	0	0		ENSG00000168418|ENST00000308251|KCNG4;nc|ENSG00000168418|Q8TDN1-2|KCNG4	ENSG00000168418|ENST00000308251|KCNG4	ENSG00000168418|ENST00000308251|KCNG4	MULTI-MSMS	OvCa9_classI_Rep2	2	426.24639892578125	2	426.247286	850.48002	-0.93249	-0.00039747	-2.0488	-0.0008733	-2.9813	-0.0012708	426.2463036759244	138.33	1.7168	138.1	137.59	139.3	-0.22696					83	34	3	0	0	0	0.73938	1	13859	13859		31.955	7.7521	1	161940			53311	6907	44084	44121	57989	57989					0.04879881637236849
SILGVFNILF	10	Unmodified	_SILGVFNILF_					0	0	0		nc|ENSG00000183780|Q8IY50|SLC35F3;ENSG00000183780|ENST00000366618|SLC35F3	nc|ENSG00000183780|Q8IY50|SLC35F3	nc|ENSG00000183780|Q8IY50|SLC35F3	MULTI-SECPEP	OvCa9_classI_Rep2	2	561.308837890625	2	561.831517	1121.64848	0.55566	0.00031219	4.4437	0.0024966	4.9994	0.0028088	561.833998697009	78.829	1.2249	77.09	76.903	78.128	-1.7398					49	23	3	0	0	0	0.026665	1	6671	6671		51.335	23.453	1	74975			53312	8107	44085	44122	57990	57990					0.09252363550876908
SILGVTISIK	10	Unmodified	_SILGVTISIK_					0	0	0			REV__JAG1|p.D188Lfs*225|1|0.21|ENSG00000101384|chr20:10658600-10658601|-/AA|frameshift_variant	REV__JAG1|p.D188Lfs*225|1|0.21|ENSG00000101384|chr20:10658600-10658601|-/AA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.8301391601562	2	515.828975	1029.6434	2.9454	0.0015193	-3.4073	-0.0017576	-0.46192	-0.00023827	515.8271563507058	134.24	2.5208	132.72	132.39	134.91	-1.5257					147	50	5	0	0	0	0.48398	1	13067	13067		56.434	6.8977	1	1356000	+		53313	28321	44086	44123	57991	57991					0.1297605968827611
SILHDVVEV	9	Unmodified	_SILHDVVEV_					0	0	0		ENST00000572148.1_1_17:4863453-4863890:-|nuORF;ENSG00000091640|ENST00000206020|SPAG7	ENST00000572148.1_1_17:4863453-4863890:-|nuORF	ENST00000572148.1_1_17:4863453-4863890:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	505.781005859375	2	505.779482	1009.54441	2.0547	0.0010392	0.079954	4.0439E-05	2.1346	0.0010796	505.77940087353124	99.947	1.0377	99.947	99.652	100.69	0					59	24	3	0	0	0	0.055688	2	11074	11047;11074		115.46	33.218	1	9754900			53314	1874	44087	44124	57992;57993	57993					0.04002036723386482
SILHDVVEV	9	Unmodified	_SILHDVVEV_					0	0	0		ENST00000572148.1_1_17:4863453-4863890:-|nuORF;ENSG00000091640|ENST00000206020|SPAG7	ENST00000572148.1_1_17:4863453-4863890:-|nuORF	ENST00000572148.1_1_17:4863453-4863890:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	505.77947998046875	2	505.779482	1009.54441	-1.5489	-0.00078341	1.055	0.00053361	-0.49389	-0.0002498	505.7800462360912	101.56	2.0773	100.8	100.27	102.35	-0.76401					114	41	4	0	0	0	0.055688	3	9330	9317;9330;9343		115.46	46.672	1	757390			53315	1874	44087	44124	57994;57995;57996	57995					0.04002036723386482
SILHDVVEV	9	Unmodified	_SILHDVVEV_					0	0	0		ENST00000572148.1_1_17:4863453-4863890:-|nuORF;ENSG00000091640|ENST00000206020|SPAG7	ENST00000572148.1_1_17:4863453-4863890:-|nuORF	ENST00000572148.1_1_17:4863453-4863890:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	505.7806701660156	2	505.779482	1009.54441	-0.9558	-0.00048342	0.53839	0.00027231	-0.4174	-0.00021111	505.77975675104807	102.42	2.1987	100.9	100.27	102.46	-1.5211					112	41	4	0	0	0	0.071436	4	7050	7038;7044;7050;7064		106.42	29.569	1	821930			53316	1874	44087	44124	57997;57998;57999;58000	57999					0.04002036723386482
SILHDVVEV	9	Unmodified	_SILHDVVEV_					0	0	0		ENST00000572148.1_1_17:4863453-4863890:-|nuORF;ENSG00000091640|ENST00000206020|SPAG7	ENST00000572148.1_1_17:4863453-4863890:-|nuORF	ENST00000572148.1_1_17:4863453-4863890:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.78106689453125	2	505.779482	1009.54441	-0.65211	-0.00032982	0.31399	0.00015881	-0.33812	-0.00017101	505.7796917442395	103.11	2.3563	100.91	100.36	102.72	-2.1994					116	42	4	0	0	0	0.11171	3	9296	9287;9296;9309		94.006	28.203	1	890940			53317	1874	44087	44124	58001;58002;58003	58002					0.04002036723386482
SILLAPATAE	10	Unmodified	_SILLAPATAE_					0	0	0		nc|ENSG00000172890|Q6IA69-2|NADSYN1;ENSG00000172890|ENST00000319023|NADSYN1;ENST00000531236.1_1_11:71196518-71209628:+|nuORF	nc|ENSG00000172890|Q6IA69-2|NADSYN1	nc|ENSG00000172890|Q6IA69-2|NADSYN1	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.3039245605469	2	493.281857	984.549162	0.14584	7.1941E-05	0.16964	8.3681E-05	0.31548	0.00015562	493.28263195739834	105.56	1.0979	105.12	104.65	105.75	-0.43642					30	21	2	0	0	0	0.026734	1	9781	9781		39.253	6.4404	1	14422			53318	7326	44088	44125	58004	58004					0.05626920866131968
SILLEEVSPE	10	Unmodified	_SILLEEVSPE_					0	0	0		ENSG00000197746|ENST00000394936|PSAP;nc|ENSG00000197746|P07602-2|PSAP;nc|ENSG00000197746|P07602-3|PSAP	ENSG00000197746|ENST00000394936|PSAP	ENSG00000197746|ENST00000394936|PSAP	MULTI-MSMS	OvCa99_classI_Rep5	1	558.2998046875	2	558.295162	1114.57577	2.7711	0.0015471	4.2537	0.0023748	7.0248	0.0039219	558.2975158837085	121.64	1.8468	121.64	121.34	123.18	0					95	39	3	0	0	0	0.31157	1	13976	13976		79.451	5.4763	1	4926200			53319	8742	44089	44126	58005	58005					0.023065649668296828
SILLFSLVG	9	Unmodified	_SILLFSLVG_					0	0	0			REV__tr|A0A553SQ05|A0A553SQ05_NIACIPhotosystemIassemblyproteinYcf4OS=NialliacirculansOX=1397GN=CEQ21_16095PE=4SV=1	REV__tr|A0A553SQ05|A0A553SQ05_NIACIPhotosystemIassemblyproteinYcf4OS=NialliacirculansOX=1397GN=CEQ21_16095PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.7861633300781	2	474.791861	947.569169	0.98159	0.00046605	1.9135	0.0009085	2.8951	0.0013745	474.7921928248039	113.42	0.44422	111.97	111.7	112.15	-1.4461					10	8	2	0	0	0	0.027462	1	10516	10516		37.159	6.6555	1	5526.1	+		53320	30592	44090	44127	58006	58006					0.09328716596769482
SILLIAMILY	10	Unmodified	_SILLIAMILY_					0	0	0		tr|A0A553SL53|A0A553SL53_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20005PE=4SV=1	tr|A0A553SL53|A0A553SL53_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20005PE=4SV=1	tr|A0A553SL53|A0A553SL53_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20005PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	575.3446655273438	2	575.351228	1148.6879	-6.2917	-0.0036199	-3.8482	-0.0022141	-10.14	-0.005834	575.3489585356984	154.97	1.0558	153.9	153.56	154.61	-1.073					68	25	4	0	0	0	0.71192	1	13298	13298		29.15	11.682	1	137860			53321	33685	44091	44128	58007	58007					0.1195074751010452
SILLWKLQ	8	Unmodified	_SILLWKLQ_					0	0	0		ENSG00000149573|ENST00000278937|MPZL2;ENST00000529376.5_1_11:118130767-118134958:-|nuORF	ENSG00000149573|ENST00000278937|MPZL2	ENSG00000149573|ENST00000278937|MPZL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.7601318359375	2	500.813128	999.611703	-1.1333	-0.00056759	-3.0786	-0.0015418	-4.2119	-0.0021094	500.81158281354953	70.39	0.83177	66.909	66.49	67.322	-3.4812					26	16	2	0	0	0	0.028476	1	5282	5282		27.882	17.617	1	56242			53322	5474	44092	44129	58008	58008					0.11188111724982264
SILNPDEIIM	10	Unmodified	_SILNPDEIIM_					0	0	0		tr|A0A7D6VUW8|A0A7D6VUW8_9CLOTROKfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08660PE=3SV=1	tr|A0A7D6VUW8|A0A7D6VUW8_9CLOTROKfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08660PE=3SV=1	tr|A0A7D6VUW8|A0A7D6VUW8_9CLOTROKfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08660PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	572.316162109375	2	572.799557	1143.58456	-1.2776	-0.00073178	-4.3378	-0.0024847	-5.6154	-0.0032165	572.7973114524245	96.647	0.6199	94.819	94.571	95.191	-1.8286					16	11	2	0	0	0	0.026464	1	6342	6342		69.628	25.511	1	15520			53323	35201	44093	44130	58009	58009					0.018512153316351032
SILPFHIE	8	Unmodified	_SILPFHIE_					0	0	0			REV__ENST00000454079.5_1_3:50004874-50005063:+|nuORF	REV__ENST00000454079.5_1_3:50004874-50005063:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	478.2643127441406	2	478.26601	954.517468	-1.4371	-0.00068734	-3.2191	-0.0015396	-4.6562	-0.0022269	478.2643712792569	61.352	1.7932	58.593	57.987	59.78	-2.7593					85	34	5	0	0	0	0.61758	1	4553	4553		60.294	7.9948	1	559570	+		53324	25996	44094	44131	58010	58010					0.03838972902849491
SILPLSGLAA	10	Unmodified	_SILPLSGLAA_					0	0	0			REV__nc|ENSG00000168903|Q6UXE8-2|BTNL3	REV__nc|ENSG00000168903|Q6UXE8-2|BTNL3	MULTI-MSMS	OvCa99_classI_Rep5	1	471.2884216308594	2	471.286943	940.559333	0.39577	0.00018652	0.059333	2.7963E-05	0.45511	0.00021449	471.2868394335814	72.34	7.0488	72.34	69.552	76.6	0					308	176	2	0	0	0	0.3976	1	7009	7009		68.787	1.2932	1	3030900	+		53325	28994	44095	44132	58011	58011					0.0866752859137705
SILQFVHMV	9	Unmodified	_SILQFVHMV_					0	0	0		nc|ENSG00000151490|Q16827-2|PTPRO;ENSG00000151490|ENST00000281171|PTPRO;nc|ENSG00000151490|Q16827-4|PTPRO;nc|ENSG00000151490|Q16827-3|PTPRO	nc|ENSG00000151490|Q16827-2|PTPRO	nc|ENSG00000151490|Q16827-2|PTPRO	MULTI-MSMS	OvCa99_classI_Rep5	1	537.2950439453125	2	537.294245	1072.57394	1.0588	0.00056887	0.72685	0.00039053	1.7856	0.00095941	537.2945199808254	131.54	0.79416	131.54	131.29	132.09	0					37	16	4	0	0	0	0.074342	1	15270	15270		104.75	33.451	1	446600			53326	5558	44096	44133	58012	58012					0.04055277467887208
SILQIKTVI	9	Unmodified	_SILQIKTVI_					0	0	0		ZBTB20|p.E188D|1|0.08|ENSG00000181722|chr3:114351514-114351514|C/A|missense_variant;ZBTB20|p.H238Tfs*86|1|0.06|ENSG00000181722|chr3:114351366-114351366|G/-|frameshift_variant;nc|ENSG00000181722|Q9HC78-2|ZBTB20;ENSG00000181722|ENST00000675478|ZBTB20	ZBTB20|p.E188D|1|0.08|ENSG00000181722|chr3:114351514-114351514|C/A|missense_variant	ZBTB20|p.E188D|1|0.08|ENSG00000181722|chr3:114351514-114351514|C/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.81390380859375	2	507.831517	1013.64848	-0.38023	-0.00019309	0.31654	0.00016075	-0.063693	-3.2345E-05	507.83125683702235	58.083	0.35344	54.738	54.546	54.899	-3.3449					9	6	2	0	0	0	0.027411	1	3793	3793		74.255	0	1	10075			53327	7949	44097	44134	58013	58013					0.14220363550907678
SILQYFLL	8	Unmodified	_SILQYFLL_					0	0	0			REV__ENST00000261479.8_1_14:35782236-35783624:+|nuORF	REV__ENST00000261479.8_1_14:35782236-35783624:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.7886047363281	2	498.791861	995.569169	-0.69611	-0.00034721	-3.8847	-0.0019376	-4.5808	-0.0022849	498.7898766980179	115.24	3.0674	115.12	114.7	117.77	-0.11777					207	61	7	0	0	0	0.44269	1	11025	11025		83.287	8.7706	1	2910400	+		53328	23951	44098	44135	58014	58014					0.07120716596762122
SILRGIFSV	9	Unmodified	_SILRGIFSV_					0	0	0		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	MULTI-MSMS	OvCa99_classI_Rep5	1	496.302001953125	2	496.300384	990.586216	2.3254	0.0011541	-0.07269	-3.6076E-05	2.2528	0.001118	496.30017512031276	121.64	0.6053	121.64	121.38	121.99	0					28	12	3	0	0	0	0.22035	1	13991	13991		72.879	12.761	1	448690			53329	6212	44099	44136	58015	58015					0.09054637202575577
SILSNIHEV	9	Unmodified	_SILSNIHEV_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	OvCa99_classI_Rep5	1	506.27874755859375	2	506.277106	1010.53966	1.134	0.00057413	1.9123	0.00096815	3.0463	0.0015423	506.2779012173054	90.872	1.0685	90.872	90.346	91.415	0					83	26	5	0	0	0	0.10421	2	9778	9750;9778		96.034	10.873	1	7744300			53330	6511	44100	44137	58016;58017	58017					0.034811525806162535
SILSNIHEV	9	Unmodified	_SILSNIHEV_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	506.277106	1010.53966	0.30305	0.00015343	-0.63539	-0.00032168	-0.33234	-0.00016825	506.2766538610972	92.113	1.2998	90.877	90.537	91.837	-1.2355	-0.0091947	-0.0010893	NaN	96.034	43	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	404300			53331	6511	44100	44137							0.034811525806162535
SILSNIHEV	9	Unmodified	_SILSNIHEV_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	506.277106	1010.53966	-1.9165	-0.00097026	1.6507	0.0008357	-0.26579	-0.00013456	506.2777565631445	92.871	1.3334	90.909	90.652	91.986	-1.9617	0.022361	0.0012254	NaN	96.034	72	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	547380			53332	6511	44100	44137							0.034811525806162535
SILSNIHEV	9	Unmodified	_SILSNIHEV_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	506.277106	1010.53966	-1.0167	-0.00051476	0.48581	0.00024596	-0.53093	-0.0002688	506.277263950876	93.395	1.1099	90.888	90.614	91.723	-2.5072	0.0016033	4.5949E-05	NaN	96.034	37	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	484370			53333	6511	44100	44137							0.034811525806162535
SILSSYDGAPL	11	Unmodified	_SILSSYDGAPL_					0	0	0		PTPRZ1|p.E1817Nfs*9|1|0.49|ENSG00000106278|chr7:122038834-122038834|G/-|frameshift_variant;nc|ENSG00000106278|P23471-2|PTPRZ1;ENSG00000106278|ENST00000393386|PTPRZ1	PTPRZ1|p.E1817Nfs*9|1|0.49|ENSG00000106278|chr7:122038834-122038834|G/-|frameshift_variant	PTPRZ1|p.E1817Nfs*9|1|0.49|ENSG00000106278|chr7:122038834-122038834|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	561.309326171875	2	561.787504	1121.56045	-0.2703	-0.00015185	1.0008	0.00056225	0.73052	0.0004104	561.7882810547088	80.394	0.86533	78.071	77.678	78.543	-2.3226					28	16	2	0	0	0	0.025329	1	4389	4389		44.117	0	1	35400			53334	2539	44101	44138	58018	58018					0.0045369816962193
SILTALQLHQQ	11	Unmodified	_SILTALQLHQQ_					0	0	0		ENSG00000126215|ENST00000555055|XRCC3	ENSG00000126215|ENST00000555055|XRCC3	ENSG00000126215|ENST00000555055|XRCC3	MULTI-MSMS	OvCa9_classI_Rep2	2	417.9063720703125	3	417.906705	1250.69829	-0.79569	-0.00033252	0.52974	0.00022138	-0.26595	-0.00011114	417.90691486872447	51.141	1.5374	48.347	47.975	49.512	-2.794					76	30	6	0	0	0	0.50203	1	3323	3323		53.597	0	1	1288200			53335	3769	44102	44139	58019	58019					0.0829644648890735
SILVLFITLTY	11	Unmodified	_SILVLFITLTY_					0	0	0		tr|A0A553SLQ1|A0A553SLQ1_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_21030PE=4SV=1	tr|A0A553SLQ1|A0A553SLQ1_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_21030PE=4SV=1	tr|A0A553SLQ1|A0A553SLQ1_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_21030PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8841552734375	2	641.88649	1281.75843	-4.6434	-0.0029805	-1.4394	-0.00092391	-6.0827	-0.0039044	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.72466	1	15859	15859		19.997	5.8596	1	543390			53336	33751	44103	44140	58020	58020					0.12881744099422576
SILVLFITLTY	11	Unmodified	_SILVLFITLTY_					0	0	0		tr|A0A553SLQ1|A0A553SLQ1_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_21030PE=4SV=1	tr|A0A553SLQ1|A0A553SLQ1_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_21030PE=4SV=1	tr|A0A553SLQ1|A0A553SLQ1_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_21030PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8824462890625	2	641.88649	1281.75843	-5.3554	-0.0034376	-0.73768	-0.00047351	-6.0931	-0.0039111	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.72466	1	13345	13345		19.997	5.1319	1	804890			53337	33751	44103	44140	58021	58021					0.12881744099422576
SILYLWVE	8	Unmodified	_SILYLWVE_					0	0	0		ENSG00000154059|ENST00000284202|IMPACT	ENSG00000154059|ENST00000284202|IMPACT	ENSG00000154059|ENST00000284202|IMPACT	MULTI-SECPEP	OvCa9_classI_Rep3	3	511.8459777832031	2	511.781493	1021.54843	-1.0029	-0.00051328	-1.9245	-0.00098492	-2.9274	-0.0014982	511.7804986504633	84.892	0.98834	82.631	82.407	83.395	-2.261					29	19	2	0	0	0	0.028476	1	4976	4976		18.324	3.4595	1	80149			53338	5710	44104	44141	58022	58022					0.03852126217077512
SIMDFGAFAF	10	Unmodified	_SIMDFGAFAF_					0	0	0			REV__ENSG00000279961|ENST00000623286|OR8U3	REV__ENSG00000279961|ENST00000623286|OR8U3	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.8139038085938	2	553.254785	1104.49502	-0.2173	-0.00012022	-3.5745	-0.0019776	-3.7918	-0.0020978	553.2527870353314	71.467	0.35829	71.467	71.349	71.707	0					12	8	2	0	0	0	0.026697	1	6895	6895		37.159	10.466	1	203250	+		53339	23656	44105	44142	58023	58023					-0.053049945570819546
SIMFVVVIL	9	Unmodified	_SIMFVVVIL_					0	0	0		tr|A0A7D7ABR8|A0A7D7ABR8_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16345PE=4SV=1	tr|A0A7D7ABR8|A0A7D7ABR8_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16345PE=4SV=1	tr|A0A7D7ABR8|A0A7D7ABR8_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16345PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	510.81298828125	2	510.811739	1019.60893	1.0663	0.00054468	2.2821	0.0011657	3.3484	0.0017104	510.8128294751169	128.19	1.0362	127.96	127.49	128.53	-0.22697					40	20	3	0	0	0	0.44294	1	12569	12569		47.916	8.8941	1	158260			53340	36218	44106	44143	58024	58024					0.09990520275823656
SIMILPTIAS	10	Unmodified	_SIMILPTIAS_					0	0	0		tr|A0A7D6VTP4|A0A7D6VTP4_9CLOTPhosphatetransportsystempermeaseproteinOS=ClostridiumintestinaleOX=36845GN=pstCPE=3SV=1	tr|A0A7D6VTP4|A0A7D6VTP4_9CLOTPhosphatetransportsystempermeaseproteinOS=ClostridiumintestinaleOX=36845GN=pstCPE=3SV=1	tr|A0A7D6VTP4|A0A7D6VTP4_9CLOTPhosphatetransportsystempermeaseproteinOS=ClostridiumintestinaleOX=36845GN=pstCPE=3SV=1	MSMS	OvCa9_classI_Rep4_	4	523.3051147460938	2	523.301736	1044.58892	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.71	1	138.21	137.71	138.71	-1.4952								0	0	0	0.14189	1	13622	13622		34.173	5.0025	1				53341	35131	44107	44144	58025	58025					0.06840724545190824
SINAQRNAL	9	Unmodified	_SINAQRNAL_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;TRIP12-MFI2|1|fusion;ENST00000479037.5_1_2:230672327-230744801:-|nuORF	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MSMS	OvCa9_classI_Rep2	2	493.7726135253906	2	493.772522	985.530492	-0.79492	-0.00039251	0.7266	0.00035878	-0.068323	-3.3736E-05	493.772644625327	52.402	1.5823	49.589	48.897	50.48	-2.8129					94	31	6	0	0	0	0.11471	3	3505	3485;3490;3505		93.195	16.421	1	334430			53342	5697	44108	44145	58026;58027;58028	58028					0.03714804014953188
SINAQRNAL	9	Unmodified	_SINAQRNAL_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12;TRIP12-MFI2|1|fusion;ENST00000479037.5_1_2:230672327-230744801:-|nuORF	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.7738037109375	2	493.772522	985.530492	-0.37748	-0.00018639	-0.05967	-2.9463E-05	-0.43715	-0.00021585	493.772510117244	52.634	2.1276	49.426	49.044	51.171	-3.208					73	41	2	0	0	0	0.064985	3	3177	3153;3177;3194		110.12	27.815	1	2012500			53343	5697	44108	44145	58029;58030;58031	58030					0.03714804014953188
SINDKIIEL	9	Unmodified	_SINDKIIEL_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2;ENST00000470247.1_1_17:17721556-17722545:-|nuORF;nc|ENSG00000072310|P36956-6|SREBF1;nc|ENSG00000072310|P36956-5|SREBF1;nc|ENSG00000198911|Q12772-2|SREBF2;ENSG00000072310|ENST00000261646|SREBF1;nc|ENSG00000072310|P36956-4|SREBF1;nc|ENSG00000072310|P36956-3|SREBF1;nc|ENSG00000072310|P36956-2|SREBF1	ENSG00000198911|ENST00000361204|SREBF2;ENSG00000072310|ENST00000261646|SREBF1	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.8020629882812	2	522.800414	1043.58628	-0.60017	-0.00031377	0.86359	0.00045148	0.26342	0.00013772	522.8007514166023	102.85	1.7277	100.65	100.25	101.98	-2.1994					65	32	4	0	0	0	0.14855	1	9274	9274		85.161	0	1	465810			53344	8906;1470	44109	44146	58032	58032					0.06622592411895312
SINELTELL	9	Unmodified	_SINELTELL_					0	0	0			REV__ENSG00000153292|ENST00000371253|ADGRF1	REV__ENSG00000153292|ENST00000371253|ADGRF1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.2824096679688	2	516.284597	1030.55464	2.3051	0.0011901	-0.50996	-0.00026328	1.7952	0.00092683	516.2842569369354	99.439	0.45745	99.439	99.195	99.652	0					19	10	2	0	0	0	0.34132	1	11000	11000		58.23	3.4536	1	1166600	+		53345	20336	44110	44147	58033	58033					0.040585996579466155
SINHEVSLI	9	Unmodified	_SINHEVSLI_					0	0	0			REV__tr|A0A7D6VSB2|A0A7D6VSB2_9CLOTMetalABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05615PE=3SV=1	REV__tr|A0A7D6VSB2|A0A7D6VSB2_9CLOTMetalABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05615PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.3240661621094	2	506.277106	1010.53966	-0.074904	-3.7922E-05	4.2296	0.0021414	4.1547	0.0021034	506.278672512371	106.3	0.78223	105.04	104.69	105.48	-1.267					23	14	2	0	0	0	0.027441	1	7463	7463		49.442	0	1	39334	+		53346	31483	44111	44148	58034	58034					0.034811525806162535
SINHLSLIL	9	Unmodified	_SINHLSLIL_					0	0	0			REV__ENST00000455957.5_1_6:30201906-30202163:-|nuORF	REV__ENST00000455957.5_1_6:30201906-30202163:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	505.30767822265625	2	505.305667	1008.59678	0.21485	0.00010856	2.1641	0.0010935	2.3789	0.0012021	505.30658540271475	114.54	1.8064	114.54	114.2	116	0					71	38	3	0	0	0	0.62352	1	13151	13151		29.15	0	1	1293700	+		53347	26023	44112	44149	58035	58035					0.09282619856992369
SINKPMQRKM	10	2 Oxidation (M)	_SINKPM(Oxidation (M))QRKM(Oxidation (M))_		SINKPM(1)QRKM(1)		SINKPM(53)QRKM(53)	0	0	2		tr|A0A553SHH7|A0A553SHH7_NIACISporulationpeptidaseYabGOS=NialliacirculansOX=1397GN=yabGPE=4SV=1	tr|A0A553SHH7|A0A553SHH7_NIACISporulationpeptidaseYabGOS=NialliacirculansOX=1397GN=yabGPE=4SV=1	tr|A0A553SHH7|A0A553SHH7_NIACISporulationpeptidaseYabGOS=NialliacirculansOX=1397GN=yabGPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	422.2232360839844	3	422.22153	1263.64276	-0.87835	-0.00037086	4.0616	0.0017149	3.1832	0.001344	422.2231892240926	60.911	2.1685	58.14	57.501	59.669	-2.7702					122	41	4	0	0	0	0.50873	2	4524	4512;4524		53.089	11.769	1	698070			53348	33274	44113	44150	58036;58037	58037		731;732			0.02148573705267154
SINQVNLTE	9	Unmodified	_SINQVNLTE_					0	0	0			REV__tr|A0A7D6ZFZ2|A0A7D6ZFZ2_9CLOTChemotaxisproteinCheWOS=ClostridiumintestinaleOX=36845GN=HZF06_17045PE=4SV=1	REV__tr|A0A7D6ZFZ2|A0A7D6ZFZ2_9CLOTChemotaxisproteinCheWOS=ClostridiumintestinaleOX=36845GN=HZF06_17045PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.3086242675781	2	509.264196	1016.51384	-0.76557	-0.00038988	2.2059	0.0011234	1.4403	0.00073351	509.2653880344217	97.567	0.64216	95.807	95.569	96.211	-1.7595					18	12	2	0	0	0	0.027279	1	6449	6449		71.296	12.514	1	87873	+		53349	31988	44114	44151	58038	58038					0.006242583383141209
SINRKKHL	8	Unmodified	_SINRKKHL_					0	0	0			REV__AluJo_dup65419|chr17:39969075-39969366:+|13.103901283152393|0.0005811066129645|14.46|260.0|7|2|sense	REV__AluJo_dup65419|chr17:39969075-39969366:+|13.103901283152393|0.0005811066129645|14.46|260.0|7|2|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.33489990234375	2	498.309075	994.603597	-1.8136	-0.00090372	2.5094	0.0012505	0.69586	0.00034675	498.3100359849641	125.17	0.36595	123.78	123.7	124.06	-1.3908					9	6	2	0	0	0	0.028476	1	11892	11892		23.042	6.5693	1	9938.3	+		53350	15596	44115	44152	58039	58039					0.1060797752822964
SINTTYPNKLI	11	Unmodified	_SINTTYPNKLI_					0	0	0		tr|A0A553SGV0|A0A553SGV0_NIACISugarfermentationstimulationproteinhomologOS=NialliacirculansOX=1397GN=sfsAPE=3SV=1	tr|A0A553SGV0|A0A553SGV0_NIACISugarfermentationstimulationproteinhomologOS=NialliacirculansOX=1397GN=sfsAPE=3SV=1	tr|A0A553SGV0|A0A553SGV0_NIACISugarfermentationstimulationproteinhomologOS=NialliacirculansOX=1397GN=sfsAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	632.3484497070312	2	632.350803	1262.68705	-0.81799	-0.00051726	0.91981	0.00058164	0.10182	6.4386E-05	632.3512790362679	100.73	0.69672	98.465	98.187	98.883	-2.2665					42	13	5	0	0	0	0.27273	1	9052	9052		70.399	0.77094	1	547900			53351	33199	44116	44153	58040	58040					0.06621624394733772
SINWMMKIA	9	Unmodified	_SINWMMKIA_					0	0	0			REV__ENSG00000158828|ENST00000321556|PINK1	REV__ENSG00000158828|ENST00000321556|PINK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.7637329101562	2	547.28028	1092.54601	-1.0679	-0.00058445	0.20891	0.00011433	-0.85901	-0.00047012	547.2800484236691	69.73	0.77818	66.248	66.009	66.787	-3.4812					30	15	3	0	0	0	0.027462	1	5211	5211		29.15	0	1	88574	+		53352	20584	44117	44154	58041	58041					0.0034363121615115233
SINYDYVVN	9	Unmodified	_SINYDYVVN_					0	0	0		tr|A0A7D6ZMY2|A0A7D6ZMY2_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13915PE=4SV=1	tr|A0A7D6ZMY2|A0A7D6ZMY2_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13915PE=4SV=1	tr|A0A7D6ZMY2|A0A7D6ZMY2_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13915PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.84716796875	2	543.758746	1085.50294	1.2875	0.00070007	0.34615	0.00018822	1.6336	0.00088829	544.2602090296209	79.27	0.19124	79.27	79.16	79.352	0					6	4	2	0	0	0	0.027462	1	8071	8071		25.574	0	1	283440			53353	35670	44118	44155	58042	58042					-0.03639144035946629
SIPEKFVVD	9	Unmodified	_SIPEKFVVD_					0	0	0		ENSG00000171488|ENST00000370454|LRRC8C	ENSG00000171488|ENST00000370454|LRRC8C	ENSG00000171488|ENST00000370454|LRRC8C	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.8195190429688	2	517.281857	1032.54916	0.12603	6.5191E-05	-0.06607	-3.4177E-05	0.059957	3.1014E-05	517.7797288968648	78.308	1.2098	76.568	76.039	77.249	-1.7398					65	23	5	0	0	0	0.027462	1	6583	6583		20.947	9.4359	1	95004			53354	7202	44119	44156	58043	58043					0.03418920866147346
SIPESRLLD	9	Unmodified	_SIPESRLLD_					0	0	0		nc|ENSG00000250120|Q9Y5I2-3|PCDHA10;ENSG00000250120|ENST00000307360|PCDHA10;PCDHA10|p.T460Sfs*119|1|0.04|ENSG00000250120|chr5:140857426-140857427|-/G|frameshift_variant;nc|ENSG00000250120|Q9Y5I2-2|PCDHA10	nc|ENSG00000250120|Q9Y5I2-3|PCDHA10	nc|ENSG00000250120|Q9Y5I2-3|PCDHA10	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.2840576171875	2	515.282389	1028.55022	-1.8263	-0.00094104	1.5851	0.00081679	-0.24112	-0.00012424	515.2832089324711	107.23	3.0946	105.36	105.01	108.11	-1.8785					136	60	5	0	0	0	0.70914	1	9860	9860		14.865	0	1	4662000			53355	9416	44120	44157	58044	58044					0.03709135235044414
SIPGPEAFTK	10	Unmodified	_SIPGPEAFTK_					0	0	0			REV__nc|ENSG00000077254|Q8TEY7-3|USP33	REV__nc|ENSG00000077254|Q8TEY7-3|USP33	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.3187255859375	2	523.779482	1045.54441	0.39286	0.00020577	-3.8168	-0.0019992	-3.424	-0.0017934	523.7773378502379	66.99	0.63174	66.99	66.739	67.371	0					30	15	3	0	0	0	0.026826	1	6217	6217		29.17	0.020503	1	751290	+		53356	17008	44121	44158	58045	58045					0.02346036723361067
SIPHRVSIC	9	Unmodified	_SIPHRVSIC_					0	0	0		ENST00000486705.1_1_3:139062973-139067190:+|nuORF	ENST00000486705.1_1_3:139062973-139067190:+|nuORF	ENST00000486705.1_1_3:139062973-139067190:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	506.2734069824219	2	506.273844	1010.53313	1.7132	0.00086734	-1.7996	-0.00091107	-0.086391	-4.3737E-05	506.2727467608177	54.771	2.6321	51.6	50.779	53.411	-3.1715					173	88	3	0	0	0	0.5811	1	1407	1407		34.173	8.7224	1	154000			53357	12626	44122	44159	58046	58046					0.028289361482507047
SIPITNKEI	9	Unmodified	_SIPITNKEI_					0	0	0		ENSG00000118507|ENST00000431975|AKAP7	ENSG00000118507|ENST00000431975|AKAP7	ENSG00000118507|ENST00000431975|AKAP7	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7948913574219	2	507.795132	1013.57571	0.21115	0.00010722	-0.66397	-0.00033716	-0.45283	-0.00022994	507.7947280281232	128.58	1.4414	127.13	126.85	128.29	-1.4565					78	28	4	0	0	0	0.40667	1	12356	12356		51.335	1.8939	1	608480			53358	3311	44123	44160	58047	58047					0.06946609757460465
SIPKNKQIA	9	Unmodified	_SIPKNKQIA_					0	0	0			REV__nc|ENSG00000116127|Q8TCU4-2|ALMS1	REV__nc|ENSG00000116127|Q8TCU4-2|ALMS1	MULTI-MSMS	OvCa9_classI_Rep2	2	499.803466796875	2	499.803291	997.59203	2.9668	0.0014828	-3.4995	-0.0017491	-0.53271	-0.00026625	499.80144783197306	25.905	0.3849	23.195	23.033	23.418	-2.7097					15	9	2	0	0	0	0.6653	1	312	312		24.203	6.8378	1	25775	+		53359	18284	44124	44161	58048	58048					0.09313735714215454
SIPLVSNIF	9	Unmodified	_SIPLVSNIF_					0	0	0			REV__nc|ENSG00000206561|Q9Y215-7|COLQ	REV__nc|ENSG00000206561|Q9Y215-7|COLQ	MULTI-MSMS	OvCa9_classI_Rep3	3	495.2873840332031	2	495.286943	988.559333	0.072907	3.611E-05	-0.4151	-0.0002056	-0.3422	-0.00016949	495.28661892712034	110.12	1.7438	108.97	108.66	110.41	-1.1444					79	33	4	0	0	0	0.49652	1	7987	7987		42.864	2.0861	1	451340	+		53360	23242	44125	44162	58049	58049					0.06459528591381059
SIPPGTHEAL	10	Unmodified	_SIPPGTHEAL_					0	0	0		ENSG00000166169|ENST00000370162|POLL	ENSG00000166169|ENST00000370162|POLL	ENSG00000166169|ENST00000370162|POLL	MULTI-MSMS	OvCa99_classI_Rep5	1	511.2720031738281	2	511.269281	1020.52401	1.0981	0.00056142	0.93763	0.00047938	2.0357	0.0010408	511.269475257723	155.83	2.8733	155.83	155.27	158.15	0					88	56	2	0	0	0	0.55359	1	18341	18341		47.657	6.2307	1	115970			53361	6646	44126	44163	58050	58050					0.0145686606357458
SIPPRLGPSGG	11	Unmodified	_SIPPRLGPSGG_					0	0	0			REV__ENSG00000183741|ENST00000407418|CBX6	REV__ENSG00000183741|ENST00000407418|CBX6	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.2931518554688	2	519.290548	1036.56654	0.28924	0.0001502	3.8099	0.0019785	4.0992	0.0021287	519.2924194198516	110.96	1.2105	109.36	109.12	110.33	-1.6011					48	22	3	0	0	0	0.56391	1	10221	10221		47.96	3.5823	1	145290	+		53362	22381	44127	44164	58051	58051					0.04972261191801408
SIPQILFRA	9	Unmodified	_SIPQILFRA_					0	0	0		ENST00000476701.5_1_7:4169443-4308379:+|nuORF	ENST00000476701.5_1_7:4169443-4308379:+|nuORF	ENST00000476701.5_1_7:4169443-4308379:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.7918090820312	2	522.813659	1043.61277	1.4581	0.0007623	3.9955	0.0020889	5.4536	0.0028512	522.8156887533512	78.697	0.82575	78.697	78.335	79.16	0					31	19	2	0	0	0	0.027462	1	7962	7962		34.173	16.808	1	1280900			53363	12470	44128	44165	58052	58052					0.09270326093906078
SIPRLAKEP	9	Unmodified	_SIPRLAKEP_					0	0	0		nc|ENSG00000168453|O43593-2|HR;ENSG00000168453|ENST00000381418|HR	nc|ENSG00000168453|O43593-2|HR	nc|ENSG00000168453|O43593-2|HR	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.33306884765625	2	505.803291	1009.59203	0.21599	0.00010925	-1.0798	-0.00054615	-0.86377	-0.0004369	505.80283387952244	57.705	0.63146	57.705	57.522	58.153	0					20	14	2	0	0	0	0.027462	1	4883	4883		14.137	0	1	280710			53364	6909	44129	44166	58053	58053					0.08761735714210772
SIPSWLQV	8	Unmodified	_SIPSWLQV_					0	0	0		ENSG00000188585|ENST00000623247|CLEC20A	ENSG00000188585|ENST00000623247|CLEC20A	ENSG00000188585|ENST00000623247|CLEC20A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.28521728515625	2	465.258185	928.501818	-0.39171	-0.00018225	-2.778	-0.0012925	-3.1697	-0.0014747	465.256653773304	74.64	0.9627	71.409	70.952	71.915	-3.2308					30	19	2	0	0	0	0.028476	1	5871	5871		23.042	3.6825	1	68979			53365	8481	44130	44167	58054	58054					0.03470686385810495
SIPVARWSI	9	Unmodified	_SIPVARWSI_					0	0	0		ENST00000244020.4_1_20:42092000-42092090:+|nuORF	ENST00000244020.4_1_20:42092000-42092090:+|nuORF	ENST00000244020.4_1_20:42092000-42092090:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	514.7970581054688	2	514.798009	1027.58147	0.071112	3.6608E-05	0.2623	0.00013503	0.33342	0.00017164	514.7979347787733	118.11	0.991	117.07	116.74	117.73	-1.0324					53	19	4	0	0	0	0.42676	1	8887	8887		49.442	1.7842	1	180470			53366	9767	44131	44168	58055	58055					0.06877753059779934
SIPVQVCF	8	Unmodified	_SIPVQVCF_					0	0	0			REV__ENST00000337339.6_1_X:11785039-11785279:+|nuORF	REV__ENST00000337339.6_1_X:11785039-11785279:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	445.90313720703125	2	446.733489	891.452425	2.8205	0.00126	2.4468	0.001093	5.2673	0.0023531	446.73429583354897	76.941	0.32731	76.941	76.799	77.126	0					12	7	3	0	0	0	0.028476	1	7721	7721		24.203	0	1	254320	+		53367	24597	44132	44169	58056	58056					0.002356551053480871
SIPVRCTLV	9	Unmodified	_SIPVRCTLV_					0	0	0		chr17:82755316-82756165|353|14.59|0.05|8.21|+|1|TE_info:MER4D1,MER4D1_dup1361,ERV1,LTR,donor,-,82754907,82755316|None,TBCD|5	chr17:82755316-82756165|353|14.59|0.05|8.21|+|1|TE_info:MER4D1,MER4D1_dup1361,ERV1,LTR,donor,-,82754907,82755316|None,TBCD|5	chr17:82755316-82756165|353|14.59|0.05|8.21|+|1|TE_info:MER4D1,MER4D1_dup1361,ERV1,LTR,donor,-,82754907,82755316|None,TBCD|5	MULTI-MSMS	OvCa9_classI_Rep2	2	494.2848815917969	2	494.28642	986.558287	-0.096989	-4.7941E-05	-0.33924	-0.00016768	-0.43623	-0.00021562	494.28606431515385	83.612	2.4718	82.013	81.369	83.841	-1.5988					133	49	4	0	0	0	0.18193	1	7156	7156		79.451	2.6044	1	1379300			53368	397	44133	44170	58057	58057					0.06446990950826148
SIPVRCTLV	9	Unmodified	_SIPVRCTLV_					0	0	0		chr17:82755316-82756165|353|14.59|0.05|8.21|+|1|TE_info:MER4D1,MER4D1_dup1361,ERV1,LTR,donor,-,82754907,82755316|None,TBCD|5	chr17:82755316-82756165|353|14.59|0.05|8.21|+|1|TE_info:MER4D1,MER4D1_dup1361,ERV1,LTR,donor,-,82754907,82755316|None,TBCD|5	chr17:82755316-82756165|353|14.59|0.05|8.21|+|1|TE_info:MER4D1,MER4D1_dup1361,ERV1,LTR,donor,-,82754907,82755316|None,TBCD|5	MULTI-MSMS	OvCa9_classI_Rep3	3	494.2868957519531	2	494.28642	986.558287	-1.2403	-0.00061306	0.87686	0.00043342	-0.36342	-0.00017964	494.28670132933	84.122	2.6507	81.861	81.346	83.997	-2.261					153	54	4	0	0	0	0.18193	1	4836	4836		79.451	8.1553	1	2419900			53369	397	44133	44170	58058	58058					0.06446990950826148
SIPYSESKL	9	Unmodified	_SIPYSESKL_					0	0	0		ENSG00000177483|ENST00000316997|RBM44	ENSG00000177483|ENST00000316997|RBM44	ENSG00000177483|ENST00000316997|RBM44	MULTI-MSMS	OvCa99_classI_Rep5	1	512.2736206054688	2	512.27149	1022.52843	1.2042	0.00061687	-0.36326	-0.00018609	0.84093	0.00043078	512.2711634540926	143.63	2.7616	143.63	141.83	144.6	0					129	55	4	0	0	0	0.51865	1	16708	16708		40.778	3.6191	1	558690			53370	7688	44134	44171	58059	58059					0.018063304864881502
SIQEEVRAK	9	Unmodified	_SIQEEVRAK_					0	0	0		ENSG00000117245|ENST00000400463|KIF17;nc|ENSG00000117245|Q9P2E2|KIF17;ENST00000477167.5_1_1:20991079-21011627:-|nuORF	ENSG00000117245|ENST00000400463|KIF17	ENSG00000117245|ENST00000400463|KIF17	MULTI-MSMS	OvCa99_classI_Rep5	1	530.2933349609375	2	530.293288	1058.57202	-0.64407	-0.00034155	0.18921	0.00010033	-0.45487	-0.00024121	530.2934208190168	35.122	0.88902	35.122	34.772	35.661	0					55	18	5	0	0	0	0.16562	1	1745	1745		82.241	2.5279	1	1267700			53371	3245	44135	44172	58060	58060					0.04507939983614051
SIQKIHDL	8	Unmodified	_SIQKIHDL_					0	0	0		ENSG00000137869|ENST00000396402|CYP19A1	ENSG00000137869|ENST00000396402|CYP19A1	ENSG00000137869|ENST00000396402|CYP19A1	MULTI-SECPEP	OvCa9_classI_Rep2	2	476.2841796875	2	477.274367	952.53418	-0.58325	-0.00027837	0.82453	0.00039353	0.24128	0.00011516	477.27447178270523	58.742	1.1742	55.962	55.436	56.61	-2.7801					38	22	2	0	0	0	0.028476	1	4207	4207		37.159	15.199	1	39591			53372	4632	44136	44173	58061	58061					0.056014737887949195
SIQKLPVG	8	Unmodified	_SIQKLPVG_					0	0	0			REV__tr|A0A7D6VPZ8|A0A7D6VPZ8_9CLOTIsoaspartyldipeptidaseOS=ClostridiumintestinaleOX=36845GN=iadAPE=3SV=1	REV__tr|A0A7D6VPZ8|A0A7D6VPZ8_9CLOTIsoaspartyldipeptidaseOS=ClostridiumintestinaleOX=36845GN=iadAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	421.2586975097656	2	421.260728	840.506903	-0.16203	-6.8257E-05	-2.9992	-0.0012634	-3.1612	-0.0013317	421.2593246005652	135.39	1.3287	134.28	133.92	135.24	-1.1076					52	26	3	0	0	0	0.75991	1	10954	10954		21.702	0	1	253370	+		53373	31290	44137	44174	58062	58062					0.08026990248424681
SIQPAPTGKA	10	Unmodified	_SIQPAPTGKA_					0	0	0			REV__ENSG00000101825|ENST00000217939|MXRA5	REV__ENSG00000101825|ENST00000217939|MXRA5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.2799987792969	2	485.271824	968.529095	1.2889	0.00062547	-1.2452	-0.00060427	0.043673	2.1193E-05	485.27244963856435	86.414	0.24582	83.787	83.663	83.908	-2.6269					5	4	2	0	0	0	0.027089	1	7310	7310		19.263	15.277	1	9451.3	+		53374	17519	44138	44175	58063	58063					0.043571699261860886
SIRALRKI	8	Unmodified	_SIRALRKI_					0	0	0			REV__nc|ENSG00000240891|Q0VAA5-2|PLCXD2	REV__nc|ENSG00000240891|Q0VAA5-2|PLCXD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.28558349609375	2	478.821818	955.629084	0.327	0.00015657	-0.47118	-0.00022561	-0.14418	-6.9039E-05	478.82148034621554	57.762	0.96635	57.762	57.522	58.488	0					37	22	3	0	0	0	0.028476	1	4963	4963		29.15	10.825	1	480370	+		53375	23444	44139	44176	58064	58064					0.14949452050655054
SIREHQKVGVL	11	Unmodified	_SIREHQKVGVL_					0	0	0		ENST00000461181.1_1_2:219610358-219610996:+|nuORF	ENST00000461181.1_1_2:219610358-219610996:+|nuORF	ENST00000461181.1_1_2:219610358-219610996:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3678588867188	2	633.369861	1264.72517	-3.894	-0.0024663	2.7981	0.0017723	-1.0959	-0.00069408	633.3715080583703	149.82	2.9263	149.6	148.42	151.35	-0.22696					170	58	4	0	0	0	0.72473	1	15214	15214		19.104	2.3861	1	116220			53376	12172	44140	44177	58065	58065					0.1033955510006308
SIRIQNNPK	9	Unmodified	_SIRIQNNPK_					0	0	0			REV__ENSG00000112996|ENST00000507110|MRPS30	REV__ENSG00000112996|ENST00000507110|MRPS30	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.3262939453125	2	535.309272	1068.60399	-0.43892	-0.00023496	4.1421	0.0022173	3.7032	0.0019823	535.3112557826577	42.582	0.30075	42.582	42.453	42.753	0					10	6	2	0	0	0	0.027433	1	2767	2767		64.207	0	1	84183	+		53377	18132	44141	44178	58066	58066					0.07243352457385299
SIRKAPDIV	9	Unmodified	_SIRKAPDIV_					0	0	0			REV__nc|ENSG00000109339|P53779-2|MAPK10;REV__ENST00000508262.2_2_4:86938383-87019884:-|nuORF	REV__nc|ENSG00000109339|P53779-2|MAPK10	MULTI-MSMS	OvCa9_classI_Rep2	2	499.8021545410156	2	499.803291	997.59203	2.9668	0.0014828	-3.4995	-0.0017491	-0.53271	-0.00026625	499.80144783197306	25.905	0.3849	23.195	23.033	23.418	-2.7097					15	9	2	0	0	0	0.71901	1	318	318		11.511	0	1	25775	+		53378	17927;26910	44142	44179	58067	58067					0.09313735714215454
SIRLLPTDL	9	Unmodified	_SIRLLPTDL_					0	0	0			REV__nc|ENSG00000183914|Q9P225-2|DNAH2	REV__nc|ENSG00000183914|Q9P225-2|DNAH2	MULTI-MSMS	OvCa9_classI_Rep2	2	514.3115844726562	2	514.310949	1026.60735	-1.0854	-0.00055823	0.5068	0.00026065	-0.57861	-0.00029758	514.3111587898388	52.512	1.881	49.699	49.345	51.226	-2.8129					64	37	2	0	0	0	0.21231	1	3528	3528		74.255	14.137	1	592000	+		53379	22394	44143	44180	58068	58068					0.09510602511409161
SIRQENLL	8	Unmodified	_SIRQENLL_					0	0	0			REV__tr|A0A7D7A290|A0A7D7A290_9CLOTDiscoidindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07485PE=3SV=1	REV__tr|A0A7D7A290|A0A7D7A290_9CLOTDiscoidindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07485PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	486.7781066894531	2	486.777274	971.539994	1.7767	0.00086488	2.1062	0.0010252	3.8829	0.0018901	486.77825631265245	90.442	2.3113	89.14	88.631	90.942	-1.302					121	44	4	0	0	0	0.12224	1	7975	7975		138.24	13.648	1	1734700	+		53380	32528	44144	44181	58069	58069					0.053085723004642205
SIRRGVSE	8	Unmodified	_SIRRGVSE_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OvCa9_classI_Rep2	2	452.2540283203125	2	452.253966	902.493378	0.86129	0.00038952	-0.9954	-0.00045017	-0.13411	-6.065E-05	452.2534208986577	33.657	1.7812	30.947	30.722	32.503	-2.7097					88	35	4	0	0	0	0.68714	1	1210	1210		45.952	3.5558	1	1170300	+		53381	16701	44145	44182	58070	58070					0.0382313246918784
SIRVTQKSYK	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SIRVTQKSYK_					1	0	0		ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF	ENSG00000170421|ENST00000692008|KRT8	ENSG00000170421|ENST00000692008|KRT8	MULTI-MSMS	OvCa9_classI_Rep2	2	417.90667724609375	3	417.906705	1250.69829	-0.79569	-0.00033252	0.52974	0.00022138	-0.26595	-0.00011114	417.90691486872447	51.141	1.5374	48.347	47.975	49.512	-2.794					76	30	6	0	0	0	0.12432	4	3329	3329;3333;3346;3367		107.45	47.524	1	1288200		+	53382	622	44146	44183	58071;58072;58073;58074	58071					0.08296446488884612
SIRVTQKSYK	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SIRVTQKSYK_					1	0	0		ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF	ENSG00000170421|ENST00000692008|KRT8	ENSG00000170421|ENST00000692008|KRT8	MULTI-MSMS	OvCa9_classI_Rep2	2	626.353759765625	2	626.356419	1250.69829	-1.9462	-0.001219	1.5082	0.00094465	-0.43806	-0.00027438	626.3573443500079	51.108	1.6856	48.314	48.024	49.71	-2.794					77	33	4	0	0	0	0.29942	2	3336	3336;3342		68.846	9.7292	1	363860		+	53383	622	44146	44183	58075;58076	58075					0.08296446488884612
SIRVTQKSYK	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SIRVTQKSYK_					1	0	0		ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF	ENSG00000170421|ENST00000692008|KRT8	ENSG00000170421|ENST00000692008|KRT8	MULTI-MSMS	OvCa9_classI_Rep4_	4	417.9060363769531	3	417.906705	1250.69829	-0.66582	-0.00027825	-0.54093	-0.00022606	-1.2068	-0.00050431	417.90655321620505	51.424	2.2109	48.251	47.972	50.183	-3.1734					136	43	6	0	0	0	0.14369	3	3019	3007;3019;3071		102.95	32.797	1	5317600		+	53384	622	44146	44183	58077;58078;58079	58078					0.08296446488884612
SIRVTQKSYK	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SIRVTQKSYK_					1	0	0		ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF	ENSG00000170421|ENST00000692008|KRT8	ENSG00000170421|ENST00000692008|KRT8	MULTI-MSMS	OvCa9_classI_Rep4_	4	626.3541870117188	2	626.356419	1250.69829	-0.39236	-0.00024576	-0.44375	-0.00027795	-0.83611	-0.0005237	626.356152403707	51.423	1.663	48.25	48.022	49.685	-3.1734					111	32	5	0	0	0	0.093557	1	3015	3015		104.01	34.386	1	2182200		+	53385	622	44146	44183	58080	58080					0.08296446488884612
SISAAILEIL	10	Unmodified	_SISAAILEIL_					0	0	0		nc|ENSG00000008838|O75448-2|MED24;ENSG00000008838|ENST00000394128|MED24	nc|ENSG00000008838|O75448-2|MED24	nc|ENSG00000008838|O75448-2|MED24	MULTI-MSMS	OvCa9_classI_Rep2	2	515.31298828125	2	515.313158	1028.61176	-2.0056	-0.0010335	1.8841	0.00097089	-0.12149	-6.2607E-05	515.3140081075317	145.09	0.89413	144.86	144.63	145.53	-0.22696					38	17	3	0	0	0	0.66721	1	14628	14628		34.173	2.6427	1	77193			53386	925	44147	44184	58081	58081					0.098600669343341
SISCRKALC	9	Unmodified	_SISCRKALC_					0	0	0		HERVK22-int_dup405|chr19:23557002-23557849:+|1.08382364310699|0.0263687417948669|5.36|399.0|7|1|sense	HERVK22-int_dup405|chr19:23557002-23557849:+|1.08382364310699|0.0263687417948669|5.36|399.0|7|1|sense	HERVK22-int_dup405|chr19:23557002-23557849:+|1.08382364310699|0.0263687417948669|5.36|399.0|7|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.8047180175781	2	490.75443	979.494306	0.05445	2.6722E-05	3.545	0.0017397	3.5995	0.0017665	490.7557293414825	58.711	0.75326	55.319	55.051	55.805	-3.392					24	14	3	0	0	0	0.027455	1	3867	3867		60.972	13.056	1	130570			53387	14473	44148	44185	58082	58082					0.003738875222211391
SISELVNGAL	10	Unmodified	_SISELVNGAL_					0	0	0		nc|ENSG00000134369|Q8NEY1-7|NAV1;nc|ENSG00000134369|Q8NEY1-2|NAV1;nc|ENSG00000134369|Q8NEY1-4|NAV1;nc|ENSG00000134369|Q8NEY1-3|NAV1;nc|ENSG00000134369|Q8NEY1|NAV1;ENSG00000134369|ENST00000685211|NAV1;nc|ENSG00000134369|Q8NEY1-5|NAV1	nc|ENSG00000134369|Q8NEY1-7|NAV1	nc|ENSG00000134369|Q8NEY1-7|NAV1	MULTI-MSMS	OvCa99_classI_Rep5	1	501.77923583984375	2	501.776939	1001.53933	0.020994	1.0534E-05	-0.5723	-0.00028717	-0.55131	-0.00027663	501.7766182729332	65.016	0.59191	65.016	64.793	65.385	0					33	14	3	0	0	0	0.22663	1	5948	5948		90.37	7.6193	1	3084200			53388	15028	44149	44186	58083	58083					0.038617328607642776
SISGNWKT	8	Unmodified	_SISGNWKT_					0	0	0		ENSG00000157152|ENST00000621198|SYN2;nc|ENSG00000157152|Q92777-2|SYN2	ENSG00000157152|ENST00000621198|SYN2	ENSG00000157152|ENST00000621198|SYN2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	446.24224853515625	2	446.729792	891.445031	0.077314	3.4538E-05	0.1294	5.7805E-05	0.20671	9.2344E-05	446.7300533367163	58.753	0.50439	55.361	55.15	55.655	-3.392					12	9	2	0	0	0	0.028476	1	3893	3893		15.642	9.7207	1	18456			53389	5877	44150	44187	58084	58084					-0.005033611707062846
SISGTVISLL	10	Unmodified	_SISGTVISLL_					0	0	0			REV__ENSG00000112462|ENST00000396806|OR12D3	REV__ENSG00000112462|ENST00000396806|OR12D3	MULTI-MSMS	OvCa9_classI_Rep2	2	495.2969970703125	2	495.297507	988.580462	1.9287	0.00095527	-2.4176	-0.0011974	-0.48887	-0.00024214	495.29619133273764	88.345	1.7759	86.977	86.641	88.417	-1.3676					106	35	4	0	0	0	0.03698	3	7737	7737;7744;7783		133.81	18.319	1	1318600	+		53390	18102	44151	44188	58085;58086;58087	58085					0.08571493900251426
SISGTVISLL	10	Unmodified	_SISGTVISLL_					0	0	0			REV__ENSG00000112462|ENST00000396806|OR12D3	REV__ENSG00000112462|ENST00000396806|OR12D3	MULTI-MSMS	OvCa9_classI_Rep3	3	495.2982482910156	2	495.297507	988.580462	-0.59494	-0.00029467	0.21543	0.0001067	-0.37951	-0.00018797	495.2974998070993	89.05	2.3659	86.919	86.607	88.973	-2.1309					110	46	4	0	0	0	0.072982	2	5448	5448;5479		120.62	5.3716	1	2173300	+		53391	18102	44151	44188	58088;58089	58088					0.08571493900251426
SISGTVISLL	10	Unmodified	_SISGTVISLL_					0	0	0			REV__ENSG00000112462|ENST00000396806|OR12D3	REV__ENSG00000112462|ENST00000396806|OR12D3	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.29876708984375	2	495.297507	988.580462	0.62327	0.0003087	-1.1454	-0.00056733	-0.52216	-0.00025862	495.296795507755	89.52	1.9685	86.945	86.656	88.624	-2.575					102	38	4	0	0	0	0.072982	1	7681	7681		120.62	5.1269	1	1899800	+		53392	18102	44151	44188	58090	58090					0.08571493900251426
SISLVRPK	8	Unmodified	_SISLVRPK_					0	0	0			REV__ENST00000486751.5_1_1:235323638-235324580:-|nuORF	REV__ENST00000486751.5_1_1:235323638-235324580:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	451.2598876953125	2	450.287277	898.560001	-0.30545	-0.00013754	-0.15345	-6.9097E-05	-0.4589	-0.00020664	450.28699223394716	53.855	0.71547	50.608	50.314	51.03	-3.2474					15	13	2	0	0	0	0.028476	1	3355	3355		25.45	18.715	1	14667	+		53393	26588	44152	44189	58091	58091					0.10666368031081674
SISLVRPK	8	Unmodified	_SISLVRPK_					0	0	0			REV__ENST00000486751.5_1_1:235323638-235324580:-|nuORF	REV__ENST00000486751.5_1_1:235323638-235324580:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	450.287277	898.560001	-0.39666	-0.00017861	1.1402	0.0005134	0.7435	0.00033479	450.28745674428	50.28	0.39531	50.28	50.114	50.509	0	-0.16382	0.00046586	NaN	30.504	17	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	172860	+		53394	26588	44152	44189							0.10666368031081674
SISRLRQIG	9	Unmodified	_SISRLRQIG_					0	0	0		CDCP1|p.P144S|1|0.06|ENSG00000163814|chr3:45112308-45112308|G/A|missense_variant	CDCP1|p.P144S|1|0.06|ENSG00000163814|chr3:45112308-45112308|G/A|missense_variant	CDCP1|p.P144S|1|0.06|ENSG00000163814|chr3:45112308-45112308|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.3114013671875	2	515.311815	1028.60908	0.67052	0.00034553	-1.334	-0.00068741	-0.66345	-0.00034188	515.3111559710834	35.314	1.6978	32.465	32.19	33.887	-2.849					108	33	5	0	0	0	0.42576	1	1153	1153		49.536	0.094497	1	2437400			53395	209	44153	44190	58092	58092					0.09591656320026232
SISRRGGKII	10	Unmodified	_SISRRGGKII_					0	0	0			REV__ENST00000529055.5_1_11:224232-236273:-|nuORF	REV__ENST00000529055.5_1_11:224232-236273:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	543.8405151367188	2	543.840739	1085.66693	1.5392	0.00083707	-1.7767	-0.00096622	-0.23749	-0.00012915	543.8395786919444	28.227	0.75276	25.518	25.344	26.096	-2.7097					24	15	2	0	0	0	0.75313	1	569	569		24.519	3.5723	1	48605	+		53396	27183	44154	44191	58093	58093					0.1275191824547619
SISSIGGIIL	10	Unmodified	_SISSIGGIIL_					0	0	0			REV__tr|A0A553SKH4|A0A553SKH4_NIACIAI-2EfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_18680PE=3SV=1	REV__tr|A0A553SKH4|A0A553SKH4_NIACIAI-2EfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_18680PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.297119140625	2	480.292225	958.569897	-0.85124	-0.00040884	2.3514	0.0011294	1.5002	0.00072053	480.29326479486843	63.826	1.6258	61.081	60.895	62.521	-2.7444					34	30	2	0	0	0	0.026871	1	4824	4824		37.159	1.5408	1	32521	+		53397	30126	44155	44192	58094	58094					0.08895511245816579
SISVMRALL	9	Unmodified	_SISVMRALL_					0	0	0			REV__AluYb8_dup2486|chr16:81085875-81086192:+|1.75652552794155|0.0110908870120779|7.31|429.0|18|2|anti-sense	REV__AluYb8_dup2486|chr16:81085875-81086192:+|1.75652552794155|0.0110908870120779|7.31|429.0|18|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	495.2965393066406	2	495.294245	988.573937	1.9287	0.00095527	4.1696	0.0020652	6.0983	0.0030204	495.29619133273764	88.345	1.7759	86.977	86.641	88.417	-1.3676					106	35	4	0	0	0	0.24951	1	7789	7789		68.787	2.3575	1	1318600	+		53398	15625	44156	44193	58095	58095					0.07919277467874508
SITDGYSENLT	11	Unmodified	_SITDGYSENLT_					0	0	0			REV__CRB1|p.D730N|1|0.2|ENSG00000134376|chr1:197427513-197427513|G/A|missense_variant	REV__CRB1|p.D730N|1|0.2|ENSG00000134376|chr1:197427513-197427513|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	600.2725830078125	2	600.274958	1198.53536	-5.913	-0.0035494	1.0593	0.00063585	-4.8537	-0.0029136	600.2754165352742	160.39	2.7294	158.78	158.34	161.07	-1.6101					180	65	4	0	0	0	0.71048	1	15818	15818		26.063	4.1035	1	309270	+		53399	16238	44157	44194	58096	58096					-0.0559640142362241
SITDNLLQLP	10	Unmodified	_SITDNLLQLP_					0	0	0		ENST00000434568.5_1_22:19121711-19126708:-|nuORF;ENST00000472073.1_1_22:19121711-19131632:-|nuORF;ENSG00000100056|ENST00000252137|ESS2	ENST00000434568.5_1_22:19121711-19126708:-|nuORF	ENST00000434568.5_1_22:19121711-19126708:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	556.3339233398438	2	557.311146	1112.60774	0.6092	0.00033951	0.63042	0.00035134	1.2396	0.00069086	557.3112800066347	63.941	0.82598	60.466	60.251	61.077	-3.475					29	16	2	0	0	0	0.026714	1	4553	4553		42.864	3.6114	1	100770			53400	2002	44158	44195	58097	58097					0.05593977440639719
SITDTPEQV	9	Unmodified	_SITDTPEQV_					0	0	0		nc|ENSG00000183091|P20929-3|NEB;ENSG00000183091|ENST00000397345|NEB;nc|ENSG00000183091|P20929-4|NEB;nc|ENSG00000183091|P20929-1|NEB	nc|ENSG00000183091|P20929-3|NEB	nc|ENSG00000183091|P20929-3|NEB	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.3004150390625	2	495.242929	988.471305	1.6771	0.00083055	0.79638	0.0003944	2.4734	0.001225	495.24344115591987	92.14	0.80287	92.14	91.625	92.428	0					25	18	2	0	0	0	0.027462	1	9958	9958		39.253	5.0803	1	383390			53401	8049	44159	44196	58098	58098					-0.023391367898966564
SITFLIPL	8	Unmodified	_SITFLIPL_					0	0	0		ENST00000474981.1_1_22:24451582-24452941:+|nuORF	ENST00000474981.1_1_22:24451582-24452941:+|nuORF	ENST00000474981.1_1_22:24451582-24452941:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.2498474121094	2	452.281129	902.547705	0.21423	9.6894E-05	0.89575	0.00040513	1.11	0.00050203	452.2816305775764	52.724	0.2023	49.516	49.4	49.602	-3.208					5	3	2	0	0	0	0.028476	1	3164	3164		60.294	0	1	15635			53402	12441	44160	44197	58099	58099					0.09253331568061185
SITGEQKAL	9	Unmodified	_SITGEQKAL_					0	0	0			REV__ENST00000533310.5_2_11:68031188-68039126:-|nuORF	REV__ENST00000533310.5_2_11:68031188-68039126:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	473.7582702636719	2	473.763832	945.513111	-0.59409	-0.00028146	1.1325	0.00053654	0.53842	0.00025508	473.764393322028	39.779	2.609	39.779	39.547	42.156	0					136	58	4	0	0	0	0.21231	1	2443	2443		74.255	0	1	28423000	+		53403	24275	44161	44198	58100	58100					0.03817463689279066
SITIIAVAAI	10	Unmodified	_SITIIAVAAI_					0	0	0			REV__tr|A0A553SFY2|A0A553SFY2_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09700PE=4SV=1	REV__tr|A0A553SFY2|A0A553SFY2_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09700PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.30975341796875	2	486.310418	970.606283	-0.36957	-0.00017972	0.29623	0.00014406	-0.073335	-3.5663E-05	486.3104765659595	123.79	1.1064	122.4	122.13	123.23	-1.3908					51	21	3	0	0	0	0.65434	1	11750	11750		35.618	6.4687	1	188920	+		53404	29635	44162	44199	58101	58101					0.11980388142512766
SITKRPLR	8	Unmodified	_SITKRPLR_					0	0	0		ENST00000421044.1_1_3:40638598-40638781:-|nuORF	ENST00000421044.1_1_3:40638598-40638781:-|nuORF	ENST00000421044.1_1_3:40638598-40638781:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	484.81561279296875	2	485.811451	969.608348	0.18445	8.9609E-05	-4.1394	-0.0020109	-3.9549	-0.0019213	485.8095168915793	110.11	1.0386	109.93	109.22	110.25	-0.17237					26	20	2	0	0	0	0.028476	1	10387	10387		19.36	6.4008	1	15781			53405	11679	44163	44200	58102	58102					0.12232861670986495
SITPGTTFLI	10	Unmodified	_SITPGTTFLI_					0	0	0		ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	ENSG00000112852|ENST00000194155|PCDHB2	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7704467773438	2	525.297507	1048.58046	1.1785	0.00061907	0.52645	0.00027654	1.705	0.00089561	525.2974160442509	112.04	0.69103	112.04	111.79	112.48	0					19	14	2	0	0	0	0.026665	1	12768	12768		42.396	9.5837	1	174130			53406	2932	44164	44201	58103	58103					0.05811493900228015
SITQLRRP	8	Unmodified	_SITQLRRP_					0	0	0		nc|ENSG00000168228|Q9H5U6-2|ZCCHC4;ENST00000505451.5_1_4:25314431-25353701:+|nuORF;nc|ENSG00000168228|Q9H5U6-3|ZCCHC4;ENSG00000168228|ENST00000302874|ZCCHC4	nc|ENSG00000168228|Q9H5U6-2|ZCCHC4	nc|ENSG00000168228|Q9H5U6-2|ZCCHC4	MULTI-MSMS	OvCa99_classI_Rep5	1	485.79461669921875	2	485.793258	969.571963	-0.4798	-0.00023309	0.30893	0.00015007	-0.17088	-8.3012E-05	485.7932523252104	49.175	0.91779	49.175	48.895	49.813	0					49	20	4	0	0	0	0.7224	1	3640	3640		38.806	0	1	3112400			53407	6880	44165	44202	58104	58104					0.08595984774274257
SITSELHAV	9	Unmodified	_SITSELHAV_					0	0	0		ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	ENSG00000004700|ENST00000444129|RECQL	MULTI-MSMS	OvCa99_classI_Rep5	1	478.75726318359375	2	478.756007	955.497461	2.5528	0.0012222	-0.32904	-0.00015753	2.2237	0.0010646	478.75569754249614	80.377	0.59547	80.377	80.148	80.744	0					25	13	3	0	0	0	0.11171	1	8244	8244		94.006	3.2298	1	669740			53408	830	44166	44203	58105	58105					0.01793177172248761
SITSVTVKI	9	Unmodified	_SITSVTVKI_					0	0	0		TMEM62|p.A601Lfs*11|1|0.07|ENSG00000137842|chr15:43184454-43184454|A/-|frameshift_variant;ENSG00000137842|ENST00000260403|TMEM62	TMEM62|p.A601Lfs*11|1|0.07|ENSG00000137842|chr15:43184454-43184454|A/-|frameshift_variant	TMEM62|p.A601Lfs*11|1|0.07|ENSG00000137842|chr15:43184454-43184454|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	474.2930908203125	2	474.292225	946.569897	2.829	0.0013418	-0.23944	-0.00011356	2.5896	0.0012282	474.29202296712106	89.369	0.40343	89.369	89.153	89.556	0					19	9	3	0	0	0	0.2422	1	9548	9548		69.628	5.4204	1	821800			53409	4630	44167	44204	58106	58106					0.09447511245809892
SIVALASVCLL	11	Unmodified	_SIVALASVCLL_					0	0	0			REV__nc|ENSG00000006071|Q09428-2|ABCC8	REV__nc|ENSG00000006071|Q09428-2|ABCC8	MULTI-MSMS	OvCa9_classI_Rep3	3	544.8216552734375	2	544.822835	1087.63112	-0.94668	-0.00051577	-2.2793	-0.0012418	-3.226	-0.0017576	544.8214432628807	117.05	1.3369	116.02	115.7	117.03	-1.0324					73	26	4	0	0	0	0.56722	1	8792	8792		47.657	6.8792	1	405390	+		53410	16409	44168	44205	58107	58107					0.09080699953574367
SIVALFVNIN	10	Unmodified	_SIVALFVNIN_					0	0	0		tr|A0A7D6ZI58|A0A7D6ZI58_9CLOTCarbohydrateABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02955PE=3SV=1	tr|A0A7D6ZI58|A0A7D6ZI58_9CLOTCarbohydrateABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02955PE=3SV=1	tr|A0A7D6ZI58|A0A7D6ZI58_9CLOTCarbohydrateABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02955PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3158569335938	2	545.318774	1088.623	-1.9768	-0.001078	-1.9702	-0.0010744	-3.947	-0.0021524	545.3174971514211	139.12	3.9663	138.06	135.98	139.95	-1.0595					186	80	3	0	0	0	0.70152	1	11391	11391		30.318	4.7437	1	94142			53411	35604	44169	44206	58108	58108					0.08222889028479585
SIVDLHSIT	9	Unmodified	_SIVDLHSIT_					0	0	0		ENSG00000116874|ENST00000235521|WARS2;nc|ENSG00000116874|Q9UGM6-2|WARS2;ENST00000495746.5_1_1:119575954-119683267:-|nuORF	ENSG00000116874|ENST00000235521|WARS2	ENSG00000116874|ENST00000235521|WARS2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.8007507324219	2	492.771657	983.528761	-2.0716	-0.0010208	1.4415	0.00071035	-0.63006	-0.00031048	492.7743625377252	108.16	0.3476	106.42	106.25	106.6	-1.7458					9	6	2	0	0	0	0.027441	1	9915	9915		37.159	0	1	7361.3			53412	3216	44170	44207	58109	58109					0.036337502063247484
SIVECFHIL	9	Carbamidomethyl (C)	_SIVEC(Carbamidomethyl (C))FHIL_	SIVEC(1)FHIL		SIVEC(41)FHIL		0	1	0		ENST00000344795.7_1_20:35240853-35240937:+|nuORF	ENST00000344795.7_1_20:35240853-35240937:+|nuORF	ENST00000344795.7_1_20:35240853-35240937:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	559.2883911132812	2	559.289159	1116.56377	2.0186	0.001129	-3.1488	-0.0017611	-1.1303	-0.00063214	559.2871196969314	130.23	0.61848	130.23	130.01	130.63	0					29	12	3	0	0	0	0.52083	1	15109	15109		40.573	8.9383	1	188290			53413	10616	44171	44208	58110	58110	109				0.010146697426307583
SIVEKPVTR	9	Unmodified	_SIVEKPVTR_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.810791015625	2	514.808574	1027.60259	0.21733	0.00011188	3.1949	0.0016447	3.4122	0.0017566	514.8099201928084	115.09	2.1184	113.69	112.99	115.11	-1.3977					90	41	5	0	0	0	0.51865	1	10689	10689		40.778	0.20554	1	518660			53414	1329	44172	44209	58111	58111					0.08989718368638933
SIVERKKP	8	Unmodified	_SIVERKKP_					0	0	0		nc|ENSG00000163681|Q14BN4-4|SLMAP	nc|ENSG00000163681|Q14BN4-4|SLMAP	nc|ENSG00000163681|Q14BN4-4|SLMAP	MULTI-MSMS	OvCa99_classI_Rep5	1	478.7994384765625	2	478.798009	955.581465	-0.016059	-7.6889E-06	-0.29286	-0.00014022	-0.30892	-0.00014791	478.7978201272586	51.187	1.4847	51.187	50.949	52.434	0					89	34	4	0	0	0	0.39692	1	3918	3918		88.643	0	1	11795000			53415	15140	44173	44210	58112	58112					0.10189753059796658
SIVHRYIT	8	Unmodified	_SIVHRYIT_					0	0	0		EFEMP2|p.M348I|1|0.17|ENSG00000172638|chr11:65867987-65867987|C/T|missense_variant	EFEMP2|p.M348I|1|0.17|ENSG00000172638|chr11:65867987-65867987|C/T|missense_variant	EFEMP2|p.M348I|1|0.17|ENSG00000172638|chr11:65867987-65867987|C/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.7760925292969	2	494.782359	987.550165	-1.0771	-0.00053292	-3.8574	-0.0019086	-4.9345	-0.0024415	494.7802232220739	36.554	0.58022	36.554	36.397	36.977	0					21	12	2	0	0	0	0.028476	1	1952	1952		18.324	0	1	1103900			53416	781	44174	44211	58113	58113					0.055891800256858915
SIVIGTHPD	9	Unmodified	_SIVIGTHPD_					0	0	0		tr|A0A553SSY7|A0A553SSY7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03955PE=4SV=1	tr|A0A553SSY7|A0A553SSY7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03955PE=4SV=1	tr|A0A553SSY7|A0A553SSY7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03955PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	469.7502746582031	2	469.750724	937.486896	-1.259	-0.00059142	1.3556	0.0006368	0.096614	4.5384E-05	469.7511923496125	68.222	1.783	65.601	64.982	66.765	-2.6203					91	35	3	0	0	0	0.29717	1	5353	5353		63.306	4.5243	1	721920			53417	34435	44175	44212	58114	58114					0.01565194517809232
SIVIRPVVSIA	11	Unmodified	_SIVIRPVVSIA_					0	0	0			REV__tr|A0A7D6ZZY6|A0A7D6ZZY6_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_08145PE=4SV=1	REV__tr|A0A7D6ZZY6|A0A7D6ZZY6_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_08145PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	577.3677368164062	2	577.368798	1152.72304	-1.6942	-0.00097816	1.3228	0.00076377	-0.37133	-0.00021439	577.3694914290571	127.2	2.4686	125.77	125.44	127.91	-1.4357					130	48	5	0	0	0	0.58572	1	12155	12155		45.972	1.5951	1	1097800	+		53418	32429	44176	44213	58115	58115					0.1527912636227029
SIVKHRSAE	9	Unmodified	_SIVKHRSAE_					0	0	0			REV__nc|ENSG00000040341|Q9NUL3-4|STAU2	REV__nc|ENSG00000040341|Q9NUL3-4|STAU2	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.7872924804688	2	513.788173	1025.56179	-0.3471	-0.00017834	-0.55861	-0.00028701	-0.90571	-0.00046534	513.7878714786193	39.389	2.2851	36.463	35.948	38.233	-2.9264					123	44	5	0	0	0	0.55588	1	1633	1633		37.159	0	1	2914100	+		53419	16628	44177	44214	58116	58116					0.05003377049047231
SIVKTVAPTL	10	Unmodified	_SIVKTVAPTL_					0	0	0			REV__nc|ENSG00000188162|Q6ZRI0|OTOG	REV__nc|ENSG00000188162|Q6ZRI0|OTOG	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.796875	2	514.82115	1027.62775	-0.39465	-0.00020317	-0.27717	-0.00014269	-0.67182	-0.00034586	514.8209735040269	116.77	2.0357	115.41	114.99	117.03	-1.3645					81	38	4	0	0	0	0.026688	1	11073	11073		32.812	0	1	780510	+		53420	22697	44178	44215	58117	58117					0.1150377317121638
SIVLSGHPQ	9	Unmodified	_SIVLSGHPQ_					0	0	0			REV__PAPLN|p.D1094H|1|0.18|ENSG00000100767|chr14:73266517-73266517|G/C|missense_variant	REV__PAPLN|p.D1094H|1|0.18|ENSG00000100767|chr14:73266517-73266517|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	469.254638671875	2	469.258717	936.50288	1.5294	0.00071767	-3.6528	-0.0017141	-2.1235	-0.00099645	469.25689536833306	86.653	0.58702	84.026	83.713	84.3	-2.6269					28	11	3	0	0	0	0.14998	1	7369	7369		84.916	0	1	381110	+		53421	29276	44179	44216	58118	58118					0.032089007547028814
SIVMFAILK	9	Unmodified	_SIVMFAILK_					0	0	0			REV__nc|ENSG00000249715|A0AVI2-4|FER1L5	REV__nc|ENSG00000249715|A0AVI2-4|FER1L5	MULTI-MSMS	OvCa99_classI_Rep5	1	511.30804443359375	2	511.309364	1020.60417	1.6393	0.00083819	-1.7897	-0.00091508	-0.15037	-7.6887E-05	511.3083391451546	133.32	0.78078	133.32	133.04	133.82	0					37	16	3	0	0	0	0.31747	1	15491	15491		60.972	5.4677	1	201300	+		53422	23490	44180	44217	58119	58119					0.09469636133064796
SIVMFAILK	9	Unmodified	_SIVMFAILK_					0	0	0			REV__nc|ENSG00000249715|A0AVI2-4|FER1L5	REV__nc|ENSG00000249715|A0AVI2-4|FER1L5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	511.309364	1020.60417	-0.52935	-0.00027066	-7.3824	-0.0037747	-7.9117	-0.0040453	511.30556921381674	134.22	0.29623	133.1	132.91	133.21	-1.1226	-0.11212	-0.0039678	NaN	60.972	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8015	+		53423	23490	44180	44217							0.09469636133064796
SIVRINSDP	9	Unmodified	_SIVRINSDP_					0	0	0			REV__tr|A0A553SMS3|A0A553SMS3_NIACIXanthinedehydrogenasesubunitDOS=NialliacirculansOX=1397GN=pucDPE=4SV=1	REV__tr|A0A553SMS3|A0A553SMS3_NIACIXanthinedehydrogenasesubunitDOS=NialliacirculansOX=1397GN=pucDPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.2353210449219	2	500.774731	999.534909	2.3872	0.0011954	3.6849	0.0018453	6.0721	0.0030407	500.7761010438143	76.004	0.51514	76.004	75.723	76.238	0					26	12	3	0	0	0	0.027453	1	7596	7596		30.318	0	1	506140	+		53424	30366	44181	44218	58120	58120					0.035122684378507074
SIVRSKKSP	9	Unmodified	_SIVRSKKSP_					0	0	0			REV__tr|A0A553SHF3|A0A553SHF3_NIACIATP-dependentzincmetalloproteaseFtsHOS=NialliacirculansOX=1397GN=ftsHPE=3SV=1	REV__tr|A0A553SHF3|A0A553SHF3_NIACIATP-dependentzincmetalloproteaseFtsHOS=NialliacirculansOX=1397GN=ftsHPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.2380676269531	2	501.308741	1000.60293	-1.0863	-0.00054459	2.8103	0.0014088	1.724	0.00086426	501.3100521263904	46.304	0.72842	43.232	42.979	43.707	-3.0724					22	13	2	0	0	0	0.027462	1	2415	2415		63.534	25.722	1	48655	+		53425	29796	44182	44219	58121	58121					0.10265138088516323
SIVRVGGRS	9	Unmodified	_SIVRVGGRS_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;ZNFX1|p.V1053Afs*12|1|0.06|ENSG00000124201|chr20:49252778-49252779|-/TCTCGGCTCACTGCAACCACCG|frameshift_variant;nc|ENSG00000124201|Q9P2E3-2|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-MSMS	OvCa9_classI_Rep2	2	465.77593994140625	2	465.777608	929.540663	0.94669	0.00044095	-1.1608	-0.00054067	-0.21409	-9.9719E-05	465.77698802825387	129.18	5.3362	128.95	126.4	131.74	-0.22696					134	107	2	0	0	0	0.69123	1	12793	12793		20.947	1.587	1	42405			53426	3631	44183	44220	58122	58122					0.07307411740191583
SIVRYGET	8	Unmodified	_SIVRYGET_					0	0	0		ENST00000587974.1_1_18:43487913-43547205:-|nuORF;EPG5-RAB38|2|fusion;EPG5-RAB38|1|fusion;nc|ENSG00000152223|Q9HCE0-2|EPG5;ENSG00000152223|ENST00000282041|EPG5	ENST00000587974.1_1_18:43487913-43547205:-|nuORF	ENST00000587974.1_1_18:43487913-43547205:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	462.27471923828125	2	462.742899	923.471246	0.09971	4.614E-05	0.18404	8.5163E-05	0.28375	0.0001313	462.7428988966898	32.687	0.48659	32.687	32.503	32.989	0					13	9	2	0	0	0	0.028476	1	1442	1442		24.203	0	1	110770			53427	5613	44184	44221	58123	58123					0.006449080007655539
SIVSLAILN	9	Unmodified	_SIVSLAILN_					0	0	0		ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF	ENSG00000087008|ENST00000356406|ACOX3	ENSG00000087008|ENST00000356406|ACOX3	MULTI-MSMS	OvCa9_classI_Rep2	2	465.2856140136719	2	465.286943	928.559333	-1.6358	-0.00076114	-1.5296	-0.00071171	-3.1655	-0.0014728	465.28614320640764	142.28	1.4816	142.05	141.52	143	-0.22697					68	29	3	0	0	0	0.62352	1	14285	14285		29.15	4.9468	1	102120			53428	1758	44185	44222	58124	58124					0.09219528591358994
SIVVVLEGGA	10	Unmodified	_SIVVVLEGGA_					0	0	0			REV__ENST00000442326.1_1_2:70321210-70322104:-|nuORF	REV__ENST00000442326.1_1_2:70321210-70322104:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	472.27752685546875	2	472.276575	942.538597	-0.73981	-0.00034939	0.48771	0.00023033	-0.2521	-0.00011906	472.27666538084793	69.778	1.0137	69.778	69.552	70.565	0					53	24	4	0	0	0	0.37436	1	6670	6670		71.877	6.4121	1	6636300	+		53429	25853	44186	44223	58125	58125					0.06502938211713172
SIWAFILKV	9	Unmodified	_SIWAFILKV_					0	0	0			REV__tr|A0A7D6VTP5|A0A7D6VTP5_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22060PE=4SV=1	REV__tr|A0A7D6VTP5|A0A7D6VTP5_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22060PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.2913818359375	2	538.828778	1075.643	-0.033551	-1.8078E-05	-4.2097	-0.0022683	-4.2433	-0.0022864	538.8265424237018	60.698	0.34278	60.698	60.559	60.901	0					10	7	2	0	0	0	0.027462	1	5328	5328		35.618	11.416	1	152080	+		53430	31621	44187	44224	58126	58126					0.10820684759096366
SIWLMLPTP	9	Unmodified	_SIWLMLPTP_					0	0	0		ENST00000555284.1_1_14:81736911-81745120:-|nuORF;nc|ENSG00000140022|Q8WXE9|STON2	ENST00000555284.1_1_14:81736911-81745120:-|nuORF	ENST00000555284.1_1_14:81736911-81745120:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.8099365234375	2	529.291171	1056.56779	1.1788	0.00062393	4.0145	0.0021248	5.1933	0.0027488	529.2931066052589	144.08	0.54404	144.08	143.76	144.31	0					18	10	3	0	0	0	0.027433	1	16857	16857		47.916	0	1	48788			53431	13645	44188	44225	58127	58127					0.04176759236338512
SIWVLLWSVGL	11	Unmodified	_SIWVLLWSVGL_					0	0	0		tr|A0A553SMG0|A0A553SMG0_NIACIDUF4272domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22375PE=4SV=1	tr|A0A553SMG0|A0A553SMG0_NIACIDUF4272domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22375PE=4SV=1	tr|A0A553SMG0|A0A553SMG0_NIACIDUF4272domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22375PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	424.89019775390625	3	424.916541	1271.72779	-0.056886	-2.4172E-05	1.1135	0.00047313	1.0566	0.00044896	424.9170780272284	21.614	0.35376	20.275	20.068	20.422	-1.3386					8	6	2	0	0	0	0.025668	1	177	177		28.577	0	1	14788			53432	33827	44189	44226	58128	58128					0.10280010505016435
SIYEVMYSCWH	11	Unmodified	_SIYEVMYSCWH_					0	0	0		ENSG00000074966|ENST00000264316|TXK	ENSG00000074966|ENST00000264316|TXK	ENSG00000074966|ENST00000264316|TXK	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.2644348144531	3	473.202024	1416.58424	0.30196	0.00014289	2.0315	0.00096129	2.3334	0.0011042	473.2028251103022	101.63	0.33512	101.63	101.36	101.69	0					13	7	3	0	0	0	0.025995	1	11272	11272		17.833	0	1	100350			53433	1520	44190	44227	58129	58129					-0.10738527659850661
SIYKKMVE	8	Unmodified	_SIYKKMVE_					0	0	0			REV__tr|A0A553SK18|A0A553SK18_NIACIM42familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_17950PE=3SV=1	REV__tr|A0A553SK18|A0A553SK18_NIACIM42familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_17950PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.3153076171875	2	499.272978	996.531403	0.077608	3.8747E-05	-3.6116	-0.0018032	-3.534	-0.0017644	499.2711225263675	111.44	0.68887	111.3	111.08	111.77	-0.13961					18	13	2	0	0	0	0.028476	1	10567	10567		31.955	0	1	16791	+		53434	30066	44191	44228	58130	58130					0.032998823396496846
SIYKVISEL	9	Unmodified	_SIYKVISEL_					0	0	0		tr|A0A7D6VSN2|A0A7D6VSN2_9CLOTDUF47domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05305PE=3SV=1	tr|A0A7D6VSN2|A0A7D6VSN2_9CLOTDUF47domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05305PE=3SV=1	tr|A0A7D6VSN2|A0A7D6VSN2_9CLOTDUF47domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05305PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.8136596679688	2	526.305332	1050.59611	0.15077	7.9354E-05	1.9802	0.0010422	2.131	0.0011215	526.3065487396688	96.602	0.79805	94.176	93.913	94.711	-2.4256					23	15	2	0	0	0	0.027426	1	8502	8502		56.721	5.3856	1	70224			53435	35039	44192	44229	58131	58131					0.07283780417287744
SIYKVISEL	9	Unmodified	_SIYKVISEL_					0	0	0		tr|A0A7D6VSN2|A0A7D6VSN2_9CLOTDUF47domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05305PE=3SV=1	tr|A0A7D6VSN2|A0A7D6VSN2_9CLOTDUF47domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05305PE=3SV=1	tr|A0A7D6VSN2|A0A7D6VSN2_9CLOTDUF47domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05305PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	526.305332	1050.59611	-1.3868	-0.0007299	4.2819	0.0022536	2.8951	0.0015237	526.3079084856789	95.892	0.69189	94.064	93.93	94.621	-1.8286	-0.056178	0.0016323	NaN	56.721	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100620			53436	35039	44192	44229							0.07283780417287744
SIYRGPSH	8	Unmodified	_SIYRGPSH_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.26226806640625	2	458.735409	915.456264	0.80902	0.00037113	-2.2549	-0.0010344	-1.4459	-0.00066328	458.7342056898158	67.116	0.32164	67.116	66.977	67.298	0					9	7	2	0	0	0	0.028476	1	6281	6281		12.959	0	1	161280			53437	1532	44193	44230	58132	58132					-0.004845390765694901
SIYTKFVTI	9	Unmodified	_SIYTKFVTI_					0	0	0			REV__ENSG00000177791|ENST00000359322|MYOZ1	REV__ENSG00000177791|ENST00000359322|MYOZ1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.3411865234375	2	536.307875	1070.6012	-0.62772	-0.00033665	-1.9875	-0.0010659	-2.6152	-0.0014025	536.3068655493412	47.869	0.61146	44.762	44.581	45.192	-3.1077					17	11	2	0	0	0	0.027462	1	2653	2653		25.45	0	1	26156	+		53438	22027	44194	44231	58133	58133					0.06872084279916635
SKAKFINRKF	10	Unmodified	_SKAKFINRKF_					0	0	0		nc|ENSG00000223519|B7ZC32|KIF28P	nc|ENSG00000223519|B7ZC32|KIF28P	nc|ENSG00000223519|B7ZC32|KIF28P	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8694458007812	2	619.87204	1237.72953	-3.8587	-0.0023919	-0.31006	-0.00019219	-4.1687	-0.0025841	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.66721	1	15417	15417		34.173	9.9698	1	492670			53439	15321	44195	44232	58134	58134					0.12017064313636183
SKAKFINRKF	10	Unmodified	_SKAKFINRKF_					0	0	0		nc|ENSG00000223519|B7ZC32|KIF28P	nc|ENSG00000223519|B7ZC32|KIF28P	nc|ENSG00000223519|B7ZC32|KIF28P	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8703002929688	2	619.87204	1237.72953	-3.1194	-0.0019336	-1.2014	-0.00074472	-4.3208	-0.0026783	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.70152	1	14896	14896		30.318	0	1	806750			53440	15321	44195	44232	58135	58135					0.12017064313636183
SKAKMAHR	8	Unmodified	_SKAKMAHR_					0	0	0		ENSG00000233802|ENST00000623787|TRIM49D2;ENSG00000223417|ENST00000420869|TRIM49D1;ENSG00000204449|ENST00000448984|TRIM49C;ENSG00000182053|ENST00000332682|TRIM49B;ENSG00000168930|ENST00000329758|TRIM49	ENSG00000233802|ENST00000623787|TRIM49D2	ENSG00000233802|ENST00000623787|TRIM49D2	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.2373962402344	2	464.760904	927.507254	-0.5129	-0.00023837	0.52404	0.00024355	0.011141	5.1779E-06	464.7610785936529	38.003	0.68003	38.003	37.714	38.394	0					24	14	2	0	0	0	0.028476	1	2165	2165		16.473	0	1	420420			53441	6958	44196	44233	58136	58136					0.04060086696631515
SKALIIVEKII	11	Unmodified	_SKALIIVEKII_					0	0	0		tr|A0A7D6ZU26|A0A7D6ZU26_9CLOTCarboxypeptidaseregulatory-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22490PE=4SV=1	tr|A0A7D6ZU26|A0A7D6ZU26_9CLOTCarboxypeptidaseregulatory-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22490PE=4SV=1	tr|A0A7D6ZU26|A0A7D6ZU26_9CLOTCarboxypeptidaseregulatory-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22490PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	409.6076354980469	3	409.607596	1225.80096	1.1396	0.00046679	-0.24169	-9.9E-05	0.89792	0.00036779	409.6074659919173	107.95	5.8573	106.76	106.27	112.13	-1.1978					409	114	4	0	0	0	0.65267	1	7830	7830		39.873	3.4264	1	1037400			53442	35764	44197	44234	58137	58137					0.19709139227666128
SKAQIPLW	8	Unmodified	_SKAQIPLW_					0	0	0			REV__chrX:77826809-77830805|184|13.22|0.72|4.19|-|0|MAGT1,MAGT1|3	REV__chrX:77826809-77830805|184|13.22|0.72|4.19|-|0|MAGT1,MAGT1|3	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.2565612792969	2	471.774003	941.533452	0.35983	0.00016976	4.1597	0.0019625	4.5196	0.0021322	471.7762615878854	46.188	0.47525	46.188	46.112	46.587	0					17	10	2	0	0	0	0.028476	1	3286	3286		12.959	5.7658	1	323450	+		53443	16143	44198	44235	58138	58138					0.06034679139747823
SKAVKTVL	8	Unmodified	_SKAVKTVL_					0	0	0		nc|ENSG00000134240|P54868-3|HMGCS2;nc|ENSG00000134240|P54868-2|HMGCS2;ENSG00000134240|ENST00000369406|HMGCS2	nc|ENSG00000134240|P54868-3|HMGCS2	nc|ENSG00000134240|P54868-3|HMGCS2	MULTI-MSMS	OvCa9_classI_Rep2	2	423.27484130859375	2	423.276378	844.538203	-1.0746	-0.00045487	-1.9263	-0.00081535	-3.0009	-0.0012702	423.27545611036373	140.26	1.6211	140.03	139.45	141.07	-0.22696					84	32	4	0	0	0	0.7594	1	14038	14038		21.96	0	1	166850			53444	4265	44199	44236	58139	58139					0.10971563282521402
SKDLELPIIPP	11	Unmodified	_SKDLELPIIPP_					0	0	0		nc|ENSG00000188158|Q6T4R5-4|NHS;nc|ENSG00000188158|Q6T4R5-3|NHS;nc|ENSG00000188158|Q6T4R5-2|NHS;ENSG00000188158|ENST00000676302|NHS	nc|ENSG00000188158|Q6T4R5-4|NHS	nc|ENSG00000188158|Q6T4R5-4|NHS	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3533935546875	2	611.358096	1220.70164	-4.1138	-0.002515	0.73385	0.00044864	-3.3799	-0.0020663	611.35829967267	154.75	0.78024	153.74	153.42	154.2	-1.0076					39	15	3	0	0	0	0.72466	1	13301	13301		19.997	0.6368	1	36196			53445	8455	44200	44237	58140	58140					0.1001169654291516
SKDLELPIIPP	11	Unmodified	_SKDLELPIIPP_					0	0	0		nc|ENSG00000188158|Q6T4R5-4|NHS;nc|ENSG00000188158|Q6T4R5-3|NHS;nc|ENSG00000188158|Q6T4R5-2|NHS;ENSG00000188158|ENST00000676302|NHS	nc|ENSG00000188158|Q6T4R5-4|NHS	nc|ENSG00000188158|Q6T4R5-4|NHS	MULTI-MATCH	OvCa9_classI_Rep2	2		2	611.358096	1220.70164	-4.3785	-0.0026769	0.64514	0.00039441	-3.7334	-0.0022824	611.3581046272061	153.79	0.89117	153.57	153.22	154.11	-0.22697	-0.09104	-0.00016157	NaN	19.997	23	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9278.5			53446	8455	44200	44237							0.1001169654291516
SKDLELPIIPP	11	Unmodified	_SKDLELPIIPP_					0	0	0		nc|ENSG00000188158|Q6T4R5-4|NHS;nc|ENSG00000188158|Q6T4R5-3|NHS;nc|ENSG00000188158|Q6T4R5-2|NHS;ENSG00000188158|ENST00000676302|NHS	nc|ENSG00000188158|Q6T4R5-4|NHS	nc|ENSG00000188158|Q6T4R5-4|NHS	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	611.358096	1220.70164	-4.1888	-0.0025608	0.8834	0.00054007	-3.3054	-0.0020208	611.3584011605628	155.16	0.51173	153.66	153.39	153.9	-1.4911	0.0069938	0.00012975	NaN	19.997	28	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23796			53447	8455	44200	44237							0.1001169654291516
SKDLGLAPREL	11	Unmodified	_SKDLGLAPREL_					0	0	0		ENSG00000253846|ENST00000398610|PCDHGA10;nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10;PCDHGA10|p.L557Pfs*37|1|0.03|ENSG00000253846|chr5:141414843-141414844|-/CC|frameshift_variant	ENSG00000253846|ENST00000398610|PCDHGA10	ENSG00000253846|ENST00000398610|PCDHGA10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	600.3147583007812	2	599.843145	1197.67174	0.28913	0.00017343	-0.4599	-0.00027587	-0.17077	-0.00010244	599.8425841571781	101.93	0.88783	99.733	99.471	100.36	-2.1994					37	16	3	0	0	0	0.025404	1	9156	9156		16.717	0	1	82752			53448	9439	44201	44238	58141	58141					0.08080757597554111
SKDLKQEI	8	Unmodified	_SKDLKQEI_					0	0	0		nc|ENSG00000185792|Q7RTR0-2|NLRP9;ENSG00000185792|ENST00000332836|NLRP9	nc|ENSG00000185792|Q7RTR0-2|NLRP9	nc|ENSG00000185792|Q7RTR0-2|NLRP9	MULTI-MSMS	OvCa99_classI_Rep5	1	480.7734680175781	2	480.771657	959.528761	2.0873	0.0010035	-1.8356	-0.0008825	0.25167	0.00012099	480.77048304059264	78.155	0.61546	78.155	77.968	78.583	0					21	14	2	0	0	0	0.61841	1	7908	7908		60.118	0	1	1115700			53449	8284	44202	44239	58142	58142					0.04737750206322744
SKDVEENVGL	10	Unmodified	_SKDVEENVGL_					0	0	0		nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.8219604492188	2	545.274761	1088.53497	0.2042	0.00011134	-4.4547	-0.002429	-4.2505	-0.0023177	545.2715176458515	89.898	1.004	87.323	86.9	87.904	-2.575					30	19	3	0	0	0	0.026681	1	7774	7774		36.447	0	1	192880			53450	1260	44203	44240	58143	58143					-0.005757763527981297
SKEEILYLL	9	Unmodified	_SKEEILYLL_					0	0	0		ENSG00000163239|ENST00000368482|TDRD10;nc|ENSG00000163239|Q5VZ19|TDRD10	ENSG00000163239|ENST00000368482|TDRD10	ENSG00000163239|ENST00000368482|TDRD10	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.8199462890625	2	554.31844	1106.62233	0.34766	0.00019271	-0.78588	-0.00043563	-0.43822	-0.00024291	554.3179000227359	122.15	1.1552	120.78	120.55	121.7	-1.3666					37	22	2	0	0	0	0.44568	1	11554	11554		47.657	3.1263	1	124880			53451	6280	44204	44241	58144	58144					0.07328049588772956
SKEKKYIF	8	Unmodified	_SKEKKYIF_					0	0	0		tr|A0A553SI59|A0A553SI59_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_14235PE=4SV=1	tr|A0A553SI59|A0A553SI59_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_14235PE=4SV=1	tr|A0A553SI59|A0A553SI59_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_14235PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	521.7977905273438	2	521.800217	1041.58588	1.4995	0.00078246	-3.035	-0.0015837	-1.5355	-0.00080122	521.7982124194368	125.43	1.0915	124.38	124.11	125.2	-1.0519					48	20	3	0	0	0	0.64026	1	9782	9782		55.504	10.973	1	205620			53452	33347	44205	44242	58145	58145					0.0667521748271156
SKEPLVIQV	9	Unmodified	_SKEPLVIQV_					0	0	0		ENST00000468491.1_1_X:153073542-153095123:-|nuORF;nc|ENSG00000067840|Q76G19|PDZD4;ENSG00000067840|ENST00000393758|PDZD4	ENST00000468491.1_1_X:153073542-153095123:-|nuORF	ENST00000468491.1_1_X:153073542-153095123:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	506.806884765625	2	506.8055	1011.59645	1.4895	0.0007549	0.14844	7.523E-05	1.638	0.00083013	506.8054788596998	109.11	1.0561	109.11	108.76	109.81	0					54	23	4	0	0	0	0.070405	1	12384	12384		107.01	16.638	1	4549600			53453	1382	44206	44243	58146	58146					0.09111200137135711
SKFIKPKSN	9	Unmodified	_SKFIKPKSN_					0	0	0			REV__ENSG00000170807|ENST00000458573|LMOD2	REV__ENSG00000170807|ENST00000458573|LMOD2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.7713012695312	2	524.811116	1047.60768	-1.6517	-0.00086682	3.8641	0.0020279	2.2124	0.0011611	525.3150598447861	100.6	0.57201	98.336	97.978	98.55	-2.2665					14	10	2	0	0	0	0.027462	1	9010	9010		31.53	6.0796	1	7938.5	+		53454	21563	44207	44244	58147	58147					0.08578022231290561
SKFKKEPALT	10	Unmodified	_SKFKKEPALT_					0	0	0		IRF2BP2|p.P414Ffs*4|1|0.12|ENSG00000168264|chr1:234607661-234607662|-/AAAA|frameshift_variant;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2	IRF2BP2|p.P414Ffs*4|1|0.12|ENSG00000168264|chr1:234607661-234607662|-/AAAA|frameshift_variant	IRF2BP2|p.P414Ffs*4|1|0.12|ENSG00000168264|chr1:234607661-234607662|-/AAAA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	574.8356323242188	2	574.837331	1147.66011	-2.2313	-0.0012826	2.0629	0.0011858	-0.1684	-9.6804E-05	574.8382491790242	118.33	1.3863	118.18	117.94	119.32	-0.14755					57	27	4	0	0	0	0.60504	1	11353	11353		41.427	7.2541	1	93926			53455	6884	44208	44245	58148	58148					0.09218560574208823
SKFKPTIR	8	Unmodified	_SKFKPTIR_					0	0	0			REV__ENSG00000035681|ENST00000038176|NSMAF	REV__ENSG00000035681|ENST00000038176|NSMAF	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.7402038574219	2	488.800552	975.58655	-0.35069	-0.00017142	0.60955	0.00029795	0.25886	0.00012653	488.80069842411393	35.59	0.3675	35.59	35.293	35.661	0					10	7	2	0	0	0	0.028476	1	1810	1810		35.618	2.8059	1	28876	+		53456	16602	44209	44246	58149	58149					0.09778056922425549
SKFKTKVRRLY	11	Unmodified	_SKFKTKVRRLY_					0	0	0		nc|ENSG00000165891|Q96AV8-2|E2F7;nc|ENSG00000165891|Q96AV8-3|E2F7;ENSG00000165891|ENST00000322886|E2F7	nc|ENSG00000165891|Q96AV8-2|E2F7	nc|ENSG00000165891|Q96AV8-2|E2F7	MULTI-MSMS	OvCa9_classI_Rep3	3	476.2933654785156	3	475.961144	1424.8616	1.142	0.00054357	-1.9336	-0.00092032	-0.79157	-0.00037676	475.96017295616696	107.25	2.8215	105.99	105.67	108.49	-1.267					142	54	4	0	0	0	0.71321	1	7644	7644		25.126	6.5949	1	646610			53457	6607	44210	44247	58150	58150					0.16616669330619516
SKGRHKAFG	9	Unmodified	_SKGRHKAFG_					0	0	0		ENSG00000177535|ENST00000641149|OR2B11	ENSG00000177535|ENST00000641149|OR2B11	ENSG00000177535|ENST00000641149|OR2B11	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.806396484375	2	494.277775	986.540997	-0.74683	-0.00036914	0.25492	0.000126	-0.49192	-0.00024314	494.27808392581085	59.183	0.36657	59.183	59.011	59.377	0					14	9	2	0	0	0	0.027462	1	5069	5069		42.396	31.531	1	707500			53458	7690	44211	44248	58151	58151					0.04718831460036199
SKGSKNIEKL	10	Unmodified	_SKGSKNIEKL_					0	0	0			REV__tr|A0A7D6ZXN1|A0A7D6ZXN1_9CLOTHPrfamilyphosphocarrierproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08300PE=4SV=1	REV__tr|A0A7D6ZXN1|A0A7D6ZXN1_9CLOTHPrfamilyphosphocarrierproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08300PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.8032836914062	2	552.324588	1102.63462	-0.99968	-0.00055215	-2.7558	-0.0015221	-3.7554	-0.0020742	552.3226116469435	42.899	0.31467	39.891	39.643	39.958	-3.0074					11	5	3	0	0	0	0.026968	1	2006	2006		44.377	12.422	1	14516	+		53459	32339	44212	44249	58152	58152					0.08741086051804814
SKGTNYFYIF	10	Unmodified	_SKGTNYFYIF_					0	0	0		tr|A0A553SSG2|A0A553SSG2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03090PE=4SV=1	tr|A0A553SSG2|A0A553SSG2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03090PE=4SV=1	tr|A0A553SSG2|A0A553SSG2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03090PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	620.2691040039062	2	620.305864	1238.59717	2.0193	0.0012526	0.56851	0.00035265	2.5878	0.0016052	620.3057995442568	95.037	0.76266	95.037	94.648	95.41	0					25	17	2	0	0	0	0.026843	1	10410	10410		26.693	0	1	395560			53460	34373	44213	44250	58153	58153					-0.012580052138218889
SKHHSAVAP	9	Unmodified	_SKHHSAVAP_					0	0	0		nc|ENSG00000067182|P19438-4|TNFRSF1A	nc|ENSG00000067182|P19438-4|TNFRSF1A	nc|ENSG00000067182|P19438-4|TNFRSF1A	MULTI-MSMS	OvCa99_classI_Rep5	1	467.24981689453125	2	467.248683	932.482814	-0.38317	-0.00017903	-1.2523	-0.00058515	-1.6355	-0.00076418	467.24796935169536	55.117	0.50997	55.117	54.891	55.401	0					20	11	2	0	0	0	0.2422	1	4478	4478		69.628	12.175	1	2084800			53461	14887	44214	44251	58154	58154					0.013871498147523198
SKHKKLLI	8	Unmodified	_SKHKKLLI_					0	0	0			REV__ENSG00000188782|ENST00000456354|CATSPER4	REV__ENSG00000188782|ENST00000456354|CATSPER4	MULTI-MSMS	OvCa9_classI_Rep2	2	483.82598876953125	2	483.826569	965.638586	-0.60225	-0.00029139	0.18575	8.987E-05	-0.41651	-0.00020152	483.82654204477944	76.923	1.8627	75.133	74.894	76.757	-1.7894					84	35	4	0	0	0	0.66057	1	6384	6384		51.335	6.8044	1	705570	+		53462	22737	44215	44252	58155	58155					0.1543922033619083
SKHKKLLI	8	Unmodified	_SKHKKLLI_					0	0	0			REV__ENSG00000188782|ENST00000456354|CATSPER4	REV__ENSG00000188782|ENST00000456354|CATSPER4	MULTI-MSMS	OvCa9_classI_Rep4_	4	483.8276672363281	2	483.826569	965.638586	-0.044518	-2.1539E-05	-0.5307	-0.00025677	-0.57522	-0.00027831	483.82619225165473	78.201	1.4285	75.385	75.116	76.544	-2.8165					74	29	4	0	0	0	0.72896	2	6281	6281;6304		37.159	1.9584	1	889620	+		53463	22737	44215	44252	58156;58157	58156					0.1543922033619083
SKHKYFNN	8	Unmodified	_SKHKYFNN_					0	0	0			REV__ENSG00000225830|ENST00000355832|ERCC6	REV__ENSG00000225830|ENST00000355832|ERCC6	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.2969970703125	2	519.261791	1036.50903	-1.7047	-0.00088519	2.0665	0.0010731	0.36183	0.00018788	519.7641224492598	69.988	0.20592	69.988	69.883	70.089	0					6	4	2	0	0	0	0.028476	1	6678	6678		44.117	0	1	130140	+		53464	23366	44216	44253	58158	58158					-0.007765810137470908
SKHPALLSVVI	11	Unmodified	_SKHPALLSVVI_					0	0	0		ENSG00000203661|ENST00000641363|OR2T5;ENSG00000182783|ENST00000641069|OR2T29	ENSG00000203661|ENST00000641363|OR2T5	ENSG00000203661|ENST00000641363|OR2T5	MULTI-MSMS	OvCa9_classI_Rep3	3	582.3616333007812	2	582.360973	1162.70739	-1.9743	-0.0011498	1.7664	0.0010287	-0.20794	-0.00012109	582.3619073180486	117.3	2.4773	116.26	115.6	118.07	-1.0324					133	49	5	0	0	0	0.26821	1	8834	8834		70.816	9.1249	1	707120			53465	8026	44217	44254	58159	58159					0.13254839845239985
SKHRPKERI	9	Unmodified	_SKHRPKERI_					0	0	0			REV__nc|ENSG00000148700|Q9UEY8-2|ADD3	REV__nc|ENSG00000148700|Q9UEY8-2|ADD3	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8429565429688	2	575.843813	1149.67307	-4.018	-0.0023138	2.8816	0.0016594	-1.1364	-0.0006544	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.64427	1	12132	12132		26.693	3.6504	1	445630	+		53466	20121	44218	44255	58160	58160					0.10422436476983421
SKIELLDLC	9	Unmodified	_SKIELLDLC_					0	0	0		ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	ENSG00000050030|ENST00000055682|NEXMIF	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.2821655273438	2	517.283543	1032.55253	1.0061	0.00052044	-4.1686	-0.0021564	-3.1625	-0.0016359	517.2812284083195	139.48	1.0755	137.98	137.73	138.81	-1.4952					50	20	4	0	0	0	0.64427	1	13598	13598		26.693	1.2427	1	103460			53467	1176	44219	44256	58161	58161					0.03755847648517374
SKIEWLLV	8	Unmodified	_SKIEWLLV_					0	0	0		tr|A0A553SMF8|A0A553SMF8_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_22380PE=3SV=1	tr|A0A553SMF8|A0A553SMF8_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_22380PE=3SV=1	tr|A0A553SMF8|A0A553SMF8_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_22380PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.81658935546875	2	494.29731	986.580068	1.2139	0.00060004	-3.3041	-0.0016332	-2.0901	-0.0010331	494.29578956657264	109.23	0.4405	109.23	109.06	109.5	0					15	9	2	0	0	0	0.028476	1	12372	12372		40.573	8.6178	1	127570			53468	33826	44220	44257	58162	58162					0.08624118971044936
SKIHLISTV	9	Unmodified	_SKIHLISTV_					0	0	0			REV__nc|ENSG00000284680|Q96RD0|OR8B2	REV__nc|ENSG00000284680|Q96RD0|OR8B2	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.3051452636719	2	499.305667	996.596781	-1.0444	-0.00052148	-0.016619	-8.2977E-06	-1.061	-0.00052978	499.3056755838706	94.228	0.6618	92.332	91.95	92.612	-1.8956					18	12	2	0	0	0	0.027462	1	6103	6103		14.865	0	1	22964	+		53469	29199	44221	44258	58163	58163					0.09834619856985682
SKIISKGDSAL	11	Unmodified	_SKIISKGDSAL_					0	0	0			REV__tr|A0A553SI91|A0A553SI91_NIACIUDP-N-acetylglucosamine1-carboxyvinyltransferaseOS=NialliacirculansOX=1397GN=murAPE=3SV=1	REV__tr|A0A553SI91|A0A553SI91_NIACIUDP-N-acetylglucosamine1-carboxyvinyltransferaseOS=NialliacirculansOX=1397GN=murAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	559.8243408203125	2	559.824421	1117.63429	-0.22671	-0.00012692	0.71442	0.00039995	0.48771	0.00027303	559.8248187280101	48.115	1.5889	45.405	44.935	46.524	-2.7097					74	31	4	0	0	0	0.48812	1	2987	2987		54.722	8.2656	1	475870	+		53470	29871	44222	44259	58164	58164					0.08017666331943474
SKILFFFT	8	Unmodified	_SKILFFFT_					0	0	0		ENST00000466078.1_1_13:33222909-33223050:+|nuORF	ENST00000466078.1_1_13:33222909-33223050:+|nuORF	ENST00000466078.1_1_13:33222909-33223050:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.7934875488281	2	501.786579	1001.5586	1.6445	0.00082518	-2.0135	-0.0010104	-0.36905	-0.00018518	501.78521867317454	82.884	0.68247	82.884	82.694	83.377	0					22	15	2	0	0	0	0.028476	1	8662	8662		47.916	9.1095	1	318380			53471	12281	44223	44260	58165	58165					0.057887339423245976
SKITGEKIN	9	Unmodified	_SKITGEKIN_					0	0	0			REV__tr|A0A7D6VPE7|A0A7D6VPE7_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_16490PE=3SV=1	REV__tr|A0A7D6VPE7|A0A7D6VPE7_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_16490PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.77294921875	2	495.284931	988.55531	-0.71713	-0.00035518	0.52043	0.00025776	-0.19671	-9.7425E-05	495.2852679827138	81.009	1.1275	78.298	77.906	79.033	-2.7106					40	22	2	0	0	0	0.027462	1	6652	6652		20.947	0	1	112830	+		53472	31241	44224	44261	58166	58166					0.06057439097662609
SKIVNRDQEI	10	Unmodified	_SKIVNRDQEI_					0	0	0			REV__tr|A0A553SRD1|A0A553SRD1_NIACIBeta-1,6-glucanaseOS=NialliacirculansOX=1397GN=CEQ21_00860PE=3SV=1	REV__tr|A0A553SRD1|A0A553SRD1_NIACIBeta-1,6-glucanaseOS=NialliacirculansOX=1397GN=CEQ21_00860PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.2461242675781	3	401.222693	1200.64625	1.3185	0.000529	-1.1651	-0.00046746	0.15338	6.154E-05	401.22214027264795	44.867	0.53952	44.867	44.706	45.245	0					23	11	3	0	0	0	0.026849	1	3103	3103		3.026	0	1	219170	+		53473	30721	44225	44262	58167	58167					0.05395283075131374
SKIWRRRFNYH	11	Unmodified	_SKIWRRRFNYH_					0	0	0			REV__RNF168|p.L448Yfs*40|1|0.04|ENSG00000163961|chr3:196472192-196472192|A/-|frameshift_variant	REV__RNF168|p.L448Yfs*40|1|0.04|ENSG00000163961|chr3:196472192-196472192|A/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.7733154296875	3	521.619892	1561.83785	-1.3973	-0.00072886	-2.6873	-0.0014017	-4.0846	-0.0021306	521.6186654070284	26.967	0.30032	26.967	26.841	27.142	0					11	5	3	0	0	0	0.026523	1	766	766		2.534	0	1	47417	+		53474	29336	44226	44263	58168	58168					0.07940248616796453
SKIWVQEGL	9	Unmodified	_SKIWVQEGL_					0	0	0		ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	ENSG00000133056|ENST00000684373|PIK3C2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.304443359375	2	530.295299	1058.57605	0.018142	9.6207E-06	1.6555	0.0008779	1.6736	0.00088752	530.2960337974254	103.34	0.71222	103.34	103.18	103.89	0					18	16	2	0	0	0	0.027462	1	11603	11603		24.519	0	1	205220			53475	4193	44227	44264	58169	58169					0.049100294773325004
SKKEKIPLQ	9	Unmodified	_SKKEKIPLQ_					0	0	0		nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4;ENSG00000115310|ENST00000337526|RTN4;RTN4-KIAA0196|2|fusion	nc|ENSG00000115310|Q9NQC3-4|RTN4;RTN4-KIAA0196|2|fusion	nc|ENSG00000115310|Q9NQC3-4|RTN4	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.2927856445312	2	535.832049	1069.64954	-0.41618	-0.000223	2.4578	0.001317	2.0416	0.001094	535.833182258081	70.919	0.57533	68.348	68.166	68.741	-2.5707					19	10	3	0	0	0	0.027462	1	5717	5717		24.519	11.707	1	25240			53476	3085;32793	44228	44265	58170	58170					0.11750577919792704
SKKFPRTDLI	10	Unmodified	_SKKFPRTDLI_					0	0	0			REV__ENSG00000178445|ENST00000321612|GLDC	REV__ENSG00000178445|ENST00000321612|GLDC	MULTI-SECPEP	OvCa99_classI_Rep5	1	603.7727661132812	2	602.856055	1203.69756	0.73646	0.00044398	-4.4724	-0.0026962	-3.736	-0.0022522	602.8530498891024	161.05	0.3494	161.05	160.81	161.16	0					8	6	2	0	0	0	0.02717	1	18880	18880		17.468	2.6031	1	22160	+		53477	22059	44229	44266	58171	58171					0.10385651839851562
SKKHILEML	9	Oxidation (M)	_SKKHILEM(Oxidation (M))L_		SKKHILEM(1)L		SKKHILEM(62)L	0	0	1		nc|ENSG00000288393|Q92670|ZNF75CP	nc|ENSG00000288393|Q92670|ZNF75CP	nc|ENSG00000288393|Q92670|ZNF75CP	MULTI-MSMS	OvCa99_classI_Rep5	1	557.822021484375	2	557.818084	1113.62162	1.3816	0.00077066	4.03	0.002248	5.4116	0.0030187	557.82021995191	156.23	2.2146	156.23	155.84	158.05	0					83	43	3	0	0	0	0.3076	1	18368	18368		62.107	9.1707	1	227800			53478	15385	44230	44267	58172	58172		378			0.06934931668070021
SKKHPLDT	8	Unmodified	_SKKHPLDT_					0	0	0		ENSG00000123989|ENST00000243776|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF;nc|ENSG00000123989|Q8IZ52-2|CHPF	ENSG00000123989|ENST00000243776|CHPF	ENSG00000123989|ENST00000243776|CHPF	MULTI-SECPEP	OvCa99_classI_Rep5	1	462.7397155761719	2	463.258717	924.50288	-0.40466	-0.00018746	0.48882	0.00022645	0.084168	3.8992E-05	463.2589108861691	48.424	0.33823	48.424	48.292	48.63	0					11	7	2	0	0	0	0.028476	1	3534	3534		82.305	21.333	1	129330			53479	3619	44231	44268	58173	58173					0.03760900754696195
SKKKEREKKHK	11	Unmodified	_SKKKEREKKHK_					0	0	0			REV__ENSG00000188177|ENST00000409871|ZC3H6	REV__ENSG00000188177|ENST00000409871|ZC3H6	MULTI-SECPEP	OvCa99_classI_Rep5	1	476.7819519042969	3	475.959803	1424.85758	-0.040978	-1.9504E-05	-2.0726	-0.00098648	-2.1136	-0.001006	475.9587909816743	22.693	0.24716	22.693	22.574	22.821	0					8	5	2	0	0	0	0.026383	1	250	250		8.7993	2.1397	1	27551	+		53480	22698	44232	44269	58174	58174					0.16214579836855592
SKKKKKVKV	9	Unmodified	_SKKKKKVKV_					0	0	0		ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	ENSG00000149136|ENST00000278412|SSRP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.86181640625	2	536.881876	1071.7492	2.3985	0.0012877	3.0844	0.001656	5.4829	0.0029437	536.8811292943363	96.629	0.33469	96.629	96.418	96.753	0					11	7	2	0	0	0	0.027462	1	10583	10583		3.41	0	1	98538			53481	5444	44233	44270	58175	58175					0.21619440324411698
SKKKKMTL	8	Unmodified	_SKKKKMTL_					0	0	0		ENST00000216378.2_1_14:50799198-50799279:-|nuORF	ENST00000216378.2_1_14:50799198-50799279:-|nuORF	ENST00000216378.2_1_14:50799198-50799279:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.3065490722656	2	482.304613	962.594672	0.55527	0.00026781	3.1637	0.0015259	3.719	0.0017937	482.30597189609745	140.99	1.301	139.53	139.2	140.5	-1.4627					53	24	3	0	0	0	0.75208	1	13764	13764		17.365	0	1	78534			53482	9673	44234	44271	58176	58176					0.11187867847536381
SKKKSKKHSM	10	Unmodified	_SKKKSKKHSM_					0	0	0			REV__ENSG00000118985|ENST00000237853|ELL2	REV__ENSG00000118985|ENST00000237853|ELL2	MULTI-MSMS	OvCa99_classI_Rep5	1	594.8479614257812	2	594.847707	1187.68086	0.76436	0.00045468	4.3649	0.0025965	5.1293	0.0030512	594.8500457876487	159.92	0.74251	159.92	159.66	160.4	0					36	14	3	0	0	0	0.61634	1	18740	18740		40.058	4.4399	1	161980	+		53483	18423	44235	44272	58177	58177					0.09452827682230236
SKKLAKHRAAE	11	Unmodified	_SKKLAKHRAAE_					0	0	0		nc|ENSG00000180228|O75569-3|PRKRA;nc|ENSG00000180228|O75569-2|PRKRA;ENSG00000180228|ENST00000325748|PRKRA;ENST00000466165.1_1_2:179312230-179315757:-|nuORF;ENST00000470200.5_1_2:179312233-179316155:-|nuORF;ENST00000460433.5_1_2:179312233-179315416:-|nuORF	nc|ENSG00000180228|O75569-3|PRKRA	nc|ENSG00000180228|O75569-3|PRKRA	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8681640625	2	619.870028	1237.7255	-3.8587	-0.0023919	2.9348	0.0018192	-0.92393	-0.00057272	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.72485	1	15538	15538		17.468	0.99486	1	492670			53484	7861	44236	44273	58178	58178					0.11614974819917734
SKKLAKHRAAE	11	Unmodified	_SKKLAKHRAAE_					0	0	0		nc|ENSG00000180228|O75569-3|PRKRA;nc|ENSG00000180228|O75569-2|PRKRA;ENSG00000180228|ENST00000325748|PRKRA;ENST00000466165.1_1_2:179312230-179315757:-|nuORF;ENST00000470200.5_1_2:179312233-179316155:-|nuORF;ENST00000460433.5_1_2:179312233-179315416:-|nuORF	nc|ENSG00000180228|O75569-3|PRKRA	nc|ENSG00000180228|O75569-3|PRKRA	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8709106445312	2	619.870028	1237.7255	-4.5563	-0.0028243	3.9466	0.0024464	-0.60971	-0.00037794	619.8721468174133	154.73	0.91951	153.72	153.37	154.29	-1.0076					32	18	2	0	0	0	0.7046	1	13283	13283		28.081	3.5623	1	39850			53485	7861	44236	44273	58179	58179					0.11614974819917734
SKKLNGFKP	9	Unmodified	_SKKLNGFKP_					0	0	0			REV__ENST00000372406.5_1_9:132898816-132898981:+|nuORF	REV__ENST00000372406.5_1_9:132898816-132898981:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	509.80322265625	2	509.805834	1017.59712	-0.41042	-0.00020923	-3.6368	-0.0018541	-4.0473	-0.0020633	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.69123	1	13351	13351		20.947	1.587	1	150140	+		53486	25002	44237	44274	58180	58180					0.08902039576844345
SKKRRNRYLT	10	Unmodified	_SKKRRNRYLT_					0	0	0			REV__ENST00000506451.1_1_4:120415631-120418847:+|nuORF	REV__ENST00000506451.1_1_4:120415631-120418847:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	441.2994384765625	3	441.265227	1320.77385	0.66083	0.0002916	1.5845	0.00069918	2.2453	0.00099078	441.26594707660905	60.14	0.52582	57.369	57.133	57.659	-2.7702					15	9	2	0	0	0	0.027187	1	4405	4405		19.263	1.7947	1	18454	+		53487	26887	44238	44275	58181	58181					0.1262946845984061
SKKRRNRYLT	10	Unmodified	_SKKRRNRYLT_					0	0	0			REV__ENST00000506451.1_1_4:120415631-120418847:+|nuORF	REV__ENST00000506451.1_1_4:120415631-120418847:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	441.265227	1320.77385	0.018715	8.2581E-06	2.3887	0.0010541	2.4075	0.0010623	441.60048700405036	61.099	0.44973	57.669	57.494	57.944	-3.43	0.15	0.00077165	NaN	14.086	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21036	+		53488	26887	44238	44275							0.1262946845984061
SKKVKKEPK	9	Unmodified	_SKKVKKEPK_					0	0	0			REV__ENSG00000105894|ENST00000348225|PTN	REV__ENSG00000105894|ENST00000348225|PTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.7997436523438	2	536.347866	1070.68118	2.2111	0.0011859	3.2707	0.0017542	5.4818	0.0029402	536.3495575644909	76.235	0.60274	76.235	76.076	76.678	0					26	14	2	0	0	0	0.027462	1	7649	7649		23.523	0	1	370780	+		53489	17765	44239	44276	58182	58182					0.14866570673734714
SKLAMEIIKT	10	Unmodified	_SKLAMEIIKT_					0	0	0		tr|A0A7D6ZV68|A0A7D6ZV68_9CLOTBglGfamilytranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02720PE=4SV=1	tr|A0A7D6ZV68|A0A7D6ZV68_9CLOTBglGfamilytranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02720PE=4SV=1	tr|A0A7D6ZV68|A0A7D6ZV68_9CLOTBglGfamilytranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02720PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3294067382812	2	567.333567	1132.65258	-2.6412	-0.0014984	-4.183	-0.0023732	-6.8242	-0.0038716	567.3310908608092	141.92	3.9983	140.91	138.91	142.91	-1.0106					224	80	5	0	0	0	0.77039	1	11737	11737		22.58	0.61977	1	127690			53490	35793	44240	44277	58183	58183					0.09156084982282664
SKLDIRFLG	9	Unmodified	_SKLDIRFLG_					0	0	0			REV__ENSG00000138381|ENST00000260952|ASNSD1	REV__ENSG00000138381|ENST00000260952|ASNSD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.2803344726562	2	524.811116	1047.60768	-0.91381	-0.00047958	2.2223	0.0011663	1.3085	0.00068671	524.8120646930153	63.638	0.91409	60.163	59.625	60.539	-3.475					32	18	2	0	0	0	0.027461	1	4432	4432		40.778	12.896	1	43255	+		53491	19535	44241	44278	58184	58184					0.08578022231267823
SKLDIRFLG	9	Unmodified	_SKLDIRFLG_					0	0	0			REV__ENSG00000138381|ENST00000260952|ASNSD1	REV__ENSG00000138381|ENST00000260952|ASNSD1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	524.811116	1047.60768	-1.7683	-0.00092801	2.8132	0.0014764	1.045	0.00054841	524.8123651117171	62.57	1.1677	59.826	59.152	60.32	-2.7444	-0.16861	0.00022253	NaN	40.778	35	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28384	+		53492	19535	44241	44278							0.08578022231267823
SKLDRHAIGPK	11	Unmodified	_SKLDRHAIGPK_					0	0	0			REV__nc|ENSG00000135503|P36896-5|ACVR1B	REV__nc|ENSG00000135503|P36896-5|ACVR1B	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3546752929688	2	611.356754	1220.69895	-3.1571	-0.0019301	2.0725	0.001267	-1.0847	-0.00066312	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.72064	1	12912	12912		22.58	1.6327	1	666990	+		53493	19293	44242	44279	58185	58185					0.09743285928584555
SKLEHFVSI	9	Unmodified	_SKLEHFVSI_					0	0	0		ENSG00000136802|ENST00000372600|LRRC8A;LRRC8A|p.C163Sfs*28|1|0.28|ENSG00000136802|chr9:128907652-128907652|G/-|frameshift_variant	ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.8162841796875	2	530.295299	1058.57605	-1.2615	-0.00066897	-4.2699	-0.0022643	-5.5314	-0.0029333	530.2929317811627	39.924	0.70676	36.97	36.715	37.421	-2.9541					23	13	2	0	0	0	0.027462	1	1678	1678		15.642	3.435	1	103220			53494	4513	44243	44280	58186	58186					0.049100294773325004
SKLEHFVSI	9	Unmodified	_SKLEHFVSI_					0	0	0		ENSG00000136802|ENST00000372600|LRRC8A;LRRC8A|p.C163Sfs*28|1|0.28|ENSG00000136802|chr9:128907652-128907652|G/-|frameshift_variant	ENSG00000136802|ENST00000372600|LRRC8A	ENSG00000136802|ENST00000372600|LRRC8A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.295299	1058.57605	-1.2117	-0.00064254	-3.8259	-0.0020288	-5.0375	-0.0026714	530.2932403158194	39.737	0.4478	37.027	36.854	37.302	-2.7097	0.028768	0.00036954	NaN	20.947	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35104			53495	4513	44243	44280							0.049100294773325004
SKLESGRWR	9	Unmodified	_SKLESGRWR_					0	0	0		ENST00000397276.6_1_14:23790934-23791447:+|nuORF	ENST00000397276.6_1_14:23790934-23791447:+|nuORF	ENST00000397276.6_1_14:23790934-23791447:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	558.824462890625	2	559.806897	1117.59924	-0.22074	-0.00012357	-2.2347	-0.001251	-2.4554	-0.0013746	560.3075181005058	124.74	0.8324	123.35	122.92	123.75	-1.3908					20	15	2	0	0	0	0.027462	1	11876	11876		23.523	6.0547	1	16704			53496	11342	44244	44281	58187	58187					0.045144683146418174
SKLFEDELTL	10	Unmodified	_SKLFEDELTL_					0	0	0		LETM1|p.K483Rfs*16|1|0.24|ENSG00000168924|chr4:1823007-1823016|TGCAGCTCCT/-|frameshift_variant;ENSG00000168924|ENST00000302787|LETM1;ENST00000597330.1_1_19:58556424-58557021:+|nuORF	LETM1|p.K483Rfs*16|1|0.24|ENSG00000168924|chr4:1823007-1823016|TGCAGCTCCT/-|frameshift_variant;ENST00000597330.1_1_19:58556424-58557021:+|nuORF	LETM1|p.K483Rfs*16|1|0.24|ENSG00000168924|chr4:1823007-1823016|TGCAGCTCCT/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	597.7964477539062	2	597.816261	1193.61797	1.8852	0.001127	-2.2018	-0.0013163	-0.31657	-0.00018925	598.3161316465731	117.03	0.22776	117.03	116.95	117.18	0					5	4	2	0	0	0	0.02706	1	13400	13400		30.318	0	1	47490			53497	6957;14188	44245	44282	58188	58188					0.02890540375187811
SKLFEQNEN	9	Unmodified	_SKLFEQNEN_					0	0	0			REV__NES|p.V1249Gfs*6|1|0.06|ENSG00000132688|chr1:156670442-156670443|-/C|frameshift_variant	REV__NES|p.V1249Gfs*6|1|0.06|ENSG00000132688|chr1:156670442-156670443|-/C|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.7737426757812	2	554.767103	1107.51965	1.3723	0.00076128	2.4422	0.0013549	3.8145	0.0021161	554.7678632670217	132.84	0.37793	132.84	132.75	133.13	0					14	7	2	0	0	0	0.027459	1	15447	15447		36.447	0	1	47282	+		53498	19096	44246	44283	58189	58189					-0.02980643149999196
SKLHVIPNGV	10	Unmodified	_SKLHVIPNGV_					0	0	0		tr|A0A553SKT4|A0A553SKT4_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_19235PE=3SV=1	tr|A0A553SKT4|A0A553SKT4_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_19235PE=3SV=1	tr|A0A553SKT4|A0A553SKT4_NIACIGlycosyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_19235PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.7872314453125	2	532.316566	1062.61858	-0.27946	-0.00014876	-1.4574	-0.00077578	-1.7368	-0.00092454	532.3158073447138	33.446	0.24752	33.446	33.285	33.533	0					8	4	2	0	0	0	0.027118	1	1530	1530		8.6937	1.0034	1	17186			53499	33651	44247	44284	58190	58190					0.0897742460556401
SKLSGLKKPP	10	Unmodified	_SKLSGLKKPP_					0	0	0		nc|ENSG00000063169|Q9NZM4-2|BICRA;ENSG00000063169|ENST00000594866|BICRA	nc|ENSG00000063169|Q9NZM4-2|BICRA	nc|ENSG00000063169|Q9NZM4-2|BICRA	MULTI-SECPEP	OvCa9_classI_Rep3	3	527.8170776367188	2	527.834591	1053.65463	-0.029638	-1.5644E-05	-0.55201	-0.00029137	-0.58164	-0.00030701	527.8345055572489	104.85	1.2451	103.5	103.16	104.4	-1.3482					50	23	3	0	0	0	0.026849	1	7423	7423		32.812	0	1	364980			53500	1285	44248	44285	58191	58191					0.12994881782401535
SKLSSKSA	8	Unmodified	_SKLSSKSA_					0	0	0		SCN9A|p.T465S|1|0.3|ENSG00000169432|chr2:166286545-166286545|T/A|missense_variant;SCN3A|p.K497T|1|0.04|ENSG00000153253|chr2:165146920-165146920|T/G|missense_variant;SCN3A|p.D595Vfs*70|1|0.05|ENSG00000153253|chr2:165140886-165140887|-/GA|frameshift_variant;SCN3A|p.Y1443Tfs*18|1|0.09|ENSG00000153253|chr2:165095615-165095615|A/-|frameshift_variant;nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A;SCN1A|p.N804Tfs*14|1|0.51|ENSG00000144285|chr2:166041235-166041235|T/-|frameshift_variant;nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A;nc|ENSG00000196876|Q9UQD0-4|SCN8A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A	SCN9A|p.T465S|1|0.3|ENSG00000169432|chr2:166286545-166286545|T/A|missense_variant;SCN3A|p.Y1443Tfs*18|1|0.09|ENSG00000153253|chr2:165095615-165095615|A/-|frameshift_variant;SCN1A|p.N804Tfs*14|1|0.51|ENSG00000144285|chr2:166041235-166041235|T/-|frameshift_variant;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000196876|Q9UQD0-4|SCN8A	SCN1A|p.N804Tfs*14|1|0.51|ENSG00000144285|chr2:166041235-166041235|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	404.2327880859375	2	404.232168	806.449782	1.3505	0.00054594	0.46264	0.00018701	1.8132	0.00073295	404.23224424215823	134.98	1.1763	134.75	134.34	135.52	-0.22696					59	23	3	0	0	0	0.75006	1	13333	13333		16.473	0	1	117390			53501	32802;5673;5139;7010;8655	44249	44286	58192	58192					0.038815229720512434
SKLSSKSA	8	Unmodified	_SKLSSKSA_					0	0	0		SCN9A|p.T465S|1|0.3|ENSG00000169432|chr2:166286545-166286545|T/A|missense_variant;SCN3A|p.K497T|1|0.04|ENSG00000153253|chr2:165146920-165146920|T/G|missense_variant;SCN3A|p.D595Vfs*70|1|0.05|ENSG00000153253|chr2:165140886-165140887|-/GA|frameshift_variant;SCN3A|p.Y1443Tfs*18|1|0.09|ENSG00000153253|chr2:165095615-165095615|A/-|frameshift_variant;nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A;SCN1A|p.N804Tfs*14|1|0.51|ENSG00000144285|chr2:166041235-166041235|T/-|frameshift_variant;nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000169432|Q15858-3|SCN9A;nc|ENSG00000169432|Q15858-2|SCN9A;ENSG00000169432|ENST00000642356|SCN9A;nc|ENSG00000196876|Q9UQD0-4|SCN8A;nc|ENSG00000196876|Q9UQD0-5|SCN8A;nc|ENSG00000196876|Q9UQD0|SCN8A;ENSG00000196876|ENST00000627620|SCN8A;nc|ENSG00000196876|Q9UQD0-3|SCN8A	SCN9A|p.T465S|1|0.3|ENSG00000169432|chr2:166286545-166286545|T/A|missense_variant;SCN3A|p.Y1443Tfs*18|1|0.09|ENSG00000153253|chr2:165095615-165095615|A/-|frameshift_variant;SCN1A|p.N804Tfs*14|1|0.51|ENSG00000144285|chr2:166041235-166041235|T/-|frameshift_variant;nc|ENSG00000169432|Q15858-4|SCN9A;nc|ENSG00000196876|Q9UQD0-4|SCN8A	SCN1A|p.N804Tfs*14|1|0.51|ENSG00000144285|chr2:166041235-166041235|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	404.23309326171875	2	404.232168	806.449782	4.3532	0.0017597	-2.4511	-0.00099081	1.9021	0.0007689	404.23103020545994	135.7	1.0357	134.16	133.81	134.84	-1.5437					47	20	3	0	0	0	0.74754	1	13140	13140		27.882	0	1	317610			53502	32802;5673;5139;7010;8655	44249	44286	58193	58193					0.038815229720512434
SKLTKITKGLY	11	Unmodified	_SKLTKITKGLY_					0	0	0		tr|A0A553SQE7|A0A553SQE7_NIACIMonooxygenaseOS=NialliacirculansOX=1397GN=CEQ21_07060PE=4SV=1	tr|A0A553SQE7|A0A553SQE7_NIACIMonooxygenaseOS=NialliacirculansOX=1397GN=CEQ21_07060PE=4SV=1	tr|A0A553SQE7|A0A553SQE7_NIACIMonooxygenaseOS=NialliacirculansOX=1397GN=CEQ21_07060PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	626.3902587890625	2	626.387188	1250.75982	0.37775	0.00023662	1.472	0.00092202	1.8497	0.0011586	626.3880960980439	164.17	2.6761	164.17	163.08	165.75	0					198	100	2	0	0	0	0.71191	1	19108	19108		25.574	11.437	1	238040			53503	34151	44250	44287	58194	58194					0.14447378188197035
SKLYSAQVE	9	Unmodified	_SKLYSAQVE_					0	0	0			REV__nc|ENSG00000244687|Q13404-7|UBE2V1	REV__nc|ENSG00000244687|Q13404-7|UBE2V1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.2902221679688	2	512.769114	1023.52368	-1.1817	-0.00060592	-2.4102	-0.0012359	-3.5919	-0.0018418	513.2703670721708	45.489	0.628	42.451	42.281	42.909	-3.0385					13	11	2	0	0	0	0.027453	1	2335	2335		54.776	8.8244	1	7242	+		53504	29164	44252	44288	58195	58195					0.012854463437065533
SKLYSLLFRR	10	Unmodified	_SKLYSLLFRR_					0	0	0		nc|ENSG00000184076|Q9UDW1-2|UQCR10;ENSG00000184076|ENST00000330029|UQCR10	nc|ENSG00000184076|Q9UDW1-2|UQCR10	nc|ENSG00000184076|Q9UDW1-2|UQCR10	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8814086914062	2	641.885147	1281.75574	-4.6434	-0.0029805	0.6524	0.00041876	-3.991	-0.0025618	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.79917	1	15678	15678		19.104	0	1	543390			53505	8128	44253	44289	58196	58196					0.12613333485114708
SKMKKRKD	8	Unmodified	_SKMKKRKD_					0	0	0		tr|A0A553SM86|A0A553SM86_NIACIDihydrolipoyldehydrogenaseOS=NialliacirculansOX=1397GN=lpdAPE=3SV=1	tr|A0A553SM86|A0A553SM86_NIACIDihydrolipoyldehydrogenaseOS=NialliacirculansOX=1397GN=lpdAPE=3SV=1	tr|A0A553SM86|A0A553SM86_NIACIDihydrolipoyldehydrogenaseOS=NialliacirculansOX=1397GN=lpdAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	510.8060607910156	2	510.802768	1019.59098	0.8907	0.00045497	0.079645	4.0683E-05	0.97034	0.00049565	510.8026917514014	158.18	0.73401	158.18	157.96	158.69	0					21	15	3	0	0	0	0.70469	1	18545	18545		42.396	6.7778	1	41706			53506	33810	44254	44290	58197	58197					0.08197198073673917
SKMLKRRW	8	Unmodified	_SKMLKRRW_					0	0	0			REV__ENST00000379933.7_1_6:7211827-7211938:+|nuORF	REV__ENST00000379933.7_1_6:7211827-7211938:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.80419921875	2	552.826578	1103.6386	1.7864	0.00098756	2.8927	0.0015992	4.6791	0.0025867	552.8278029233396	41.949	0.3447	39.239	38.98	39.324	-2.7097					12	6	3	0	0	0	0.028476	1	2211	2211		40.573	16.37	1	19385	+		53507	25167	44255	44291	58198	58198					0.09092897064510908
SKNANRLGSL	10	Unmodified	_SKNANRLGSL_					0	0	0		ENST00000602666.1_1_4:154600985-154601297:+|nuORF	ENST00000602666.1_1_4:154600985-154601297:+|nuORF	ENST00000602666.1_1_4:154600985-154601297:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.8162841796875	2	530.298904	1058.58326	-1.5377	-0.00081544	1.4161	0.00075097	-0.12157	-6.4466E-05	530.2997122240441	40.401	1.9168	37.447	36.963	38.88	-2.9541					49	31	3	0	0	0	0.026931	1	1678	1678		23.523	8.6578	1	173690			53508	14247	44256	44292	58199	58199					0.05630762077748841
SKNANRLGSL	10	Unmodified	_SKNANRLGSL_					0	0	0		ENST00000602666.1_1_4:154600985-154601297:+|nuORF	ENST00000602666.1_1_4:154600985-154601297:+|nuORF	ENST00000602666.1_1_4:154600985-154601297:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.298904	1058.58326	-0.99977	-0.00053018	1.5006	0.00079575	0.5008	0.00026557	530.2995727680179	40.055	0.79555	37.345	37.052	37.848	-2.7097	-0.050897	4.6681E-05	NaN	21.686	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27947			53509	14247	44256	44292							0.05630762077748841
SKNGTYHMTI	10	Unmodified	_SKNGTYHMTI_					0	0	0		tr|A0A553SI52|A0A553SI52_NIACIDUF1934domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14185PE=4SV=1	tr|A0A553SI52|A0A553SI52_NIACIDUF1934domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14185PE=4SV=1	tr|A0A553SI52|A0A553SI52_NIACIDUF1934domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14185PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.7943115234375	2	576.279323	1150.54409	1.5155	0.00087335	-3.4616	-0.0019949	-1.9461	-0.0011215	576.2768767872425	127.97	0.13899	127.97	127.9	128.04	0					4	2	2	0	0	0	0.026659	1	14818	14818		37.812	3.8899	1	49367			53510	33345	44257	44293	58200	58200					-0.0251570626812736
SKPEILNLV	9	Unmodified	_SKPEILNLV_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;COL6A3|p.T1393Cfs*9|1|0.09|ENSG00000163359|chr2:237371828-237371840|GCTCCCGGAAGGT/-|frameshift_variant;COL6A3|p.K1001Nfs*34|1|0.23|ENSG00000163359|chr2:237376800-237376839|TTTTAAGAGATTCACTATCTGTGGATGAAGATCTCCAATC/-|frameshift_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	506.8067626953125	2	506.8055	1011.59645	1.4895	0.0007549	0.14844	7.523E-05	1.638	0.00083013	506.8054788596998	109.11	1.0561	109.11	108.76	109.81	0					54	23	4	0	0	0	0.10502	2	12358	12336;12358		95.815	13.065	1	4549600			53511	6293	44258	44294	58201;58202	58202					0.09111200137135711
SKPGWWLL	8	Unmodified	_SKPGWWLL_					0	0	0		CON__Q28107;ENSG00000198734|ENST00000367797|F5	CON__Q28107;ENSG00000198734|ENST00000367797|F5	CON__Q28107	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.75921630859375	2	493.776545	985.538538	3.4277	0.0016925	1.8736	0.00092515	5.3013	0.0026177	493.7774963187193	134.12	0.69377	132.59	132.39	133.08	-1.5257					17	13	2	0	0	0	0.028476	1	12969	12969		26.796	7.4361	1	13052		+	53512	638;8861	44259	44295	58203	58203					0.045189830023673494
SKPGWWLL	8	Unmodified	_SKPGWWLL_					0	0	0		CON__Q28107;ENSG00000198734|ENST00000367797|F5	CON__Q28107;ENSG00000198734|ENST00000367797|F5	CON__Q28107	MULTI-MATCH	OvCa9_classI_Rep3	3		2	493.776545	985.538538	-0.6613	-0.00032653	6.0148	0.00297	5.3535	0.0026434	493.77966557752796	133.78	0.345	132.66	132.47	132.81	-1.1226	0.033132	0.0024785	NaN	40.573	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13726		+	53513	638;8861	44259	44295							0.045189830023673494
SKPINKLEL	9	Unmodified	_SKPINKLEL_					0	0	0			REV__ENSG00000130649|ENST00000252945|CYP2E1	REV__ENSG00000130649|ENST00000252945|CYP2E1	MULTI-MSMS	OvCa99_classI_Rep5	1	521.3184814453125	2	521.318774	1040.623	1.1754	0.00061273	0.78497	0.00040922	1.9603	0.001022	521.3191194666437	93.158	0.58245	93.158	92.885	93.468	0					31	13	3	0	0	0	0.28934	1	10115	10115		64.207	2.0999	1	2592300	+		53514	18956	44260	44296	58204	58204					0.10430889028475576
SKPKAAKPKPA	11	Unmodified	_SKPKAAKPKPA_					0	0	0			REV__ENSG00000124575|ENST00000244534|H1-3	REV__ENSG00000124575|ENST00000244534|H1-3	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.8215942382812	2	561.853316	1121.69208	4.1742	0.0023453	0.54897	0.00030844	4.7232	0.0026537	561.8537019621461	97.661	0.3419	97.661	97.438	97.78	0					12	7	2	0	0	0	0.026042	1	10717	10717		14.694	0	1	185790	+		53515	18696	44261	44297	58205	58205					0.1360997304805096
SKPLERHVE	9	Unmodified	_SKPLERHVE_					0	0	0		ENSG00000152591|ENST00000651931|DSPP	ENSG00000152591|ENST00000651931|DSPP	ENSG00000152591|ENST00000651931|DSPP	MULTI-MSMS	OvCa99_classI_Rep5	1	547.8028564453125	2	547.80128	1093.58801	0.084644	4.6368E-05	0.30779	0.00016861	0.39243	0.00021498	547.8015077520115	46.176	1.4001	46.176	45.979	47.379	0					95	31	5	0	0	0	0.22035	1	3287	3287		72.879	4.0924	1	11785000			53516	5634	44262	44298	58206	58206					0.044956462205163916
SKPTKPSVPPL	11	Unmodified	_SKPTKPSVPPL_					0	0	0		nc|ENSG00000257923|P39880-6|CUX1;nc|ENSG00000257923|P39880-4|CUX1;nc|ENSG00000257923|P39880-5|CUX1;nc|ENSG00000257923|P39880-2|CUX1;ENSG00000257923|ENST00000292535|CUX1;nc|ENSG00000257923|P39880-3|CUX1;CUX1|p.Q1075Sfs*45|1|0.07|ENSG00000257923|chr7:102227458-102227458|C/-|frameshift_variant	nc|ENSG00000257923|P39880-6|CUX1	nc|ENSG00000257923|P39880-6|CUX1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.84326171875	2	575.845156	1149.67576	-2.8608	-0.0016474	-0.58729	-0.00033819	-3.4481	-0.0019856	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.72064	1	14476	14476		22.58	2.5829	1	356230			53517	9476	44263	44299	58207	58207					0.10690847091291289
SKPYLFLLMLR	11	Unmodified	_SKPYLFLLMLR_					0	0	0			REV__HERVH-int_dup82|chr1:53424769-53427698:+|2.2654386177007835|0.0864871400321217|4.71|417.0|10|1|sense	REV__HERVH-int_dup82|chr1:53424769-53427698:+|2.2654386177007835|0.0864871400321217|4.71|417.0|10|1|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	460.940185546875	3	460.940581	1379.79991	0.9912	0.00045688	-1.3966	-0.00064375	-0.40541	-0.00018687	460.939931944109	66.339	1.2721	63.393	62.959	64.231	-2.9459					62	24	4	0	0	0	0.72469	1	2745	2745		19.627	1.0959	1	124720	+		53518	15820	44264	44300	58208	58208					0.12520601587084457
SKQEQSDPK	9	Unmodified	_SKQEQSDPK_					0	0	0		PRRC2A|p.G1884Rfs*57|1|0.07|ENSG00000204469|chr6:31636227-31636228|-/C|frameshift_variant;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A;PRRC2A|p.D230Vfs*20|1|0.09|ENSG00000204469|chr6:31625541-31625541|A/-|frameshift_variant;PRRC2A|p.G633Afs*24|1|0.04|ENSG00000204469|chr6:31629274-31629274|G/-|frameshift_variant;nc|ENSG00000204469|P48634-4|PRRC2A	PRRC2A|p.G1884Rfs*57|1|0.07|ENSG00000204469|chr6:31636227-31636228|-/C|frameshift_variant	PRRC2A|p.G1884Rfs*57|1|0.07|ENSG00000204469|chr6:31636227-31636228|-/C|frameshift_variant	MSMS	OvCa9_classI_Rep4_	4	523.7612915039062	2	523.759278	1045.504	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.63	1	115.26	114.76	115.76	-1.3645								0	0	0	0.17317	1	10890	10890		44.117	3.3386	1				53519	8988	44265	44301	58209	58209					-0.016929296670696203
SKQILPSKTPL	11	Unmodified	_SKQILPSKTPL_					0	0	0		ENSG00000101745|ENST00000262126|ANKRD12;nc|ENSG00000101745|Q6UB98-2|ANKRD12	ENSG00000101745|ENST00000262126|ANKRD12	ENSG00000101745|ENST00000262126|ANKRD12	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3685302734375	2	606.371538	1210.72852	-0.26856	-0.00016285	-2.8049	-0.0017008	-3.0734	-0.0018636	606.369699493104	145.24	3.8933	143.8	141.64	145.53	-1.4357					226	74	4	0	0	0	0.69424	1	14328	14328		31.634	4.9414	1	336140			53520	2197	44266	44302	58210	58210					0.13158805154080255
SKQLFPLLP	9	Unmodified	_SKQLFPLLP_					0	0	0			REV__ENST00000332211.10_2_10:76982119-76989426:+|nuORF	REV__ENST00000332211.10_2_10:76982119-76989426:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.79443359375	2	521.81841	1041.62227	-0.51013	-0.0002662	-1.6729	-0.00087295	-2.183	-0.0011391	521.816177207471	56.854	0.34236	56.854	56.662	57.004	0					11	7	2	0	0	0	0.027462	1	4756	4756		21.96	0	1	326110	+		53521	24543	44267	44303	58211	58211					0.10312094379423797
SKQRYTGGVS	10	Unmodified	_SKQRYTGGVS_					0	0	0			REV__nc|ENSG00000197555|O43166-3|SIPA1L1	REV__nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-MSMS	OvCa9_classI_Rep2	2	541.7841796875	2	541.783087	1081.55162	1.1001	0.00059603	1.9388	0.0010504	3.039	0.0016465	541.7841459265117	90.242	2.8271	88.94	88.433	91.26	-1.302					140	54	4	0	0	0	0.1722	6	7965	7949;7954;7965;7971;7986;7993		98.629	15.879	1	1182300	+		53522	22933	44268	44304	58212;58213;58214;58215;58216;58217	58214					0.014107693237974672
SKQRYTGGVS	10	Unmodified	_SKQRYTGGVS_					0	0	0			REV__nc|ENSG00000197555|O43166-3|SIPA1L1	REV__nc|ENSG00000197555|O43166-3|SIPA1L1	MSMS	OvCa9_classI_Rep3	3	541.785400390625	2	541.783087	1081.55162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.951	1	88.87	88.37	89.37	-2.0805								0	0	0	0.096014	1	5675	5675		90.37	2.6734	1		+		53523	22933	44268	44304	58218	58218					0.014107693237974672
SKQRYTGGVS	10	Unmodified	_SKQRYTGGVS_					0	0	0			REV__nc|ENSG00000197555|O43166-3|SIPA1L1	REV__nc|ENSG00000197555|O43166-3|SIPA1L1	MSMS	OvCa9_classI_Rep3	3	541.784912109375	2	541.783087	1081.55162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.001	1	88.945	88.445	89.445	-2.0554								0	0	0	0.075853	1	5681	5681		101.6	19.36	1		+		53524	22933	44268	44304	58219	58219					0.014107693237974672
SKQRYTGGVS	10	Unmodified	_SKQRYTGGVS_					0	0	0			REV__nc|ENSG00000197555|O43166-3|SIPA1L1	REV__nc|ENSG00000197555|O43166-3|SIPA1L1	MSMS	OvCa9_classI_Rep3	3	541.78515625	2	541.783087	1081.55162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.05	1	89.026	88.526	89.526	-2.0241								0	0	0	0.096014	1	5687	5687		90.37	8.0648	1		+		53525	22933	44268	44304	58220	58220					0.014107693237974672
SKQRYTGGVS	10	Unmodified	_SKQRYTGGVS_					0	0	0			REV__nc|ENSG00000197555|O43166-3|SIPA1L1	REV__nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.7854614257812	2	541.783087	1081.55162	-1.1376	-0.00061634	4.2548	0.0023052	3.1171	0.0016888	541.7853600054635	91.478	2.6779	88.936	88.346	91.024	-2.5425					127	52	5	0	0	0	0.11378	2	7898	7898;7909		110.12	27.879	1	1891600	+		53526	22933	44268	44304	58221;58222	58221					0.014107693237974672
SKRIDLGRQ	9	Unmodified	_SKRIDLGRQ_					0	0	0			REV__L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|65|3|sense	REV__L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|65|3|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.807373046875	2	536.814722	1071.61489	-1.1227	-0.00060267	3.6491	0.0019589	2.5264	0.0013562	536.8165827043729	98.847	1.6425	96.521	96.024	97.667	-2.3253					78	31	4	0	0	0	0.027432	1	8788	8788		41.427	0	1	371530	+		53527	28397	44269	44305	58223	58223					0.08194754831720275
SKRKKKGTL	9	Unmodified	_SKRKKKGTL_					0	0	0			REV__ENSG00000129347|ENST00000312962|KRI1;REV__ENST00000478863.5_1_19:10666000-10676642:-|nuORF	REV__ENST00000478863.5_1_19:10666000-10676642:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	523.30615234375	2	523.345658	1044.67676	-0.063214	-3.3083E-05	2.4893	0.0013027	2.426	0.0012697	523.3470813022806	107.97	0.83034	106.77	106.53	107.36	-1.1978					17	15	2	0	0	0	0.027462	1	7757	7757		35.618	8.9254	1	14133	+		53528	18894;26426	44270	44306	58224	58224					0.15621106250841876
SKRLCLALI	9	Unmodified	_SKRLCLALI_					0	0	0		ENSG00000181767|ENST00000313503|OR8H2	ENSG00000181767|ENST00000313503|OR8H2	ENSG00000181767|ENST00000313503|OR8H2	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.25494384765625	2	508.817887	1015.62122	-0.067521	-3.4356E-05	-0.64316	-0.00032725	-0.71069	-0.00036161	508.8176468228716	68.67	0.3361	68.67	68.564	68.9	0					12	7	2	0	0	0	0.027447	1	6506	6506		47.657	22.207	1	107770			53529	7952	44271	44307	58225	58225					0.11403556738844145
SKRLCLALI	9	Unmodified	_SKRLCLALI_					0	0	0		ENSG00000181767|ENST00000313503|OR8H2	ENSG00000181767|ENST00000313503|OR8H2	ENSG00000181767|ENST00000313503|OR8H2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	508.817887	1015.62122	0.38499	0.00019589	6.771	0.0034452	7.156	0.0036411	508.82094486387257	71.118	0.42075	68.611	68.489	68.91	-2.5071	-0.029377	0.00403	NaN	47.657	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29190			53530	7952	44271	44307							0.11403556738844145
SKRLHVVAEKT	11	Unmodified	_SKRLHVVAEKT_					0	0	0			REV__ENSG00000129534|ENST00000310806|MIS18BP1	REV__ENSG00000129534|ENST00000310806|MIS18BP1	MULTI-MSMS	OvCa99_classI_Rep5	1	634.3797607421875	2	634.377686	1266.74082	0.70958	0.00045014	-0.81179	-0.00051498	-0.10221	-6.4838E-05	634.3769097150116	164.24	2.8363	164.24	163	165.84	0					295	106	3	0	0	0	0.72491	1	19092	19092		16.717	2.5803	1	532610	+		53531	18902	44272	44308	58226	58226					0.11811841617122809
SKRPPLVF	8	Unmodified	_SKRPPLVF_					0	0	0			REV__nc|ENSG00000161010|Q6NTE8-3|MRNIP	REV__nc|ENSG00000161010|Q6NTE8-3|MRNIP	MULTI-MSMS	OvCa9_classI_Rep2	2	472.2872009277344	2	472.28982	942.565087	-3.3722	-0.0015927	-0.90359	-0.00042676	-4.2758	-0.0020194	472.2892568382278	150.85	1.4757	150.62	150.22	151.7	-0.22697					85	29	4	0	0	0	0.7549	1	15348	15348		24.203	3.7209	1	396600	+		53532	20686	44273	44309	58227	58227					0.09150671893701201
SKRPQFVSEK	10	Unmodified	_SKRPQFVSEK_					0	0	0			REV__nc|ENSG00000022840|Q8N5U6-2|RNF10	REV__nc|ENSG00000022840|Q8N5U6-2|RNF10	MULTI-SECPEP	OvCa99_classI_Rep5	1	403.2315979003906	3	402.559417	1204.65642	0.84372	0.00033965	-0.79799	-0.00032124	0.045728	1.8408E-05	402.558738614803	35.199	0.33199	35.199	35.052	35.384	0					10	6	2	0	0	0	0.026942	1	1759	1759		31.068	0	1	38197	+		53533	28708	44274	44310	58228	58228					0.062278908003463584
SKRQIPLTI	9	Unmodified	_SKRQIPLTI_					0	0	0			REV__tr|A0A553SLR9|A0A553SLR9_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_21145PE=4SV=1	REV__tr|A0A553SLR9|A0A553SLR9_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_21145PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.7706909179688	2	528.332216	1054.64988	2.2517	0.0011896	-0.75051	-0.00039652	1.5012	0.00079313	528.331897263739	80.228	0.54198	80.228	79.987	80.529	0					20	12	2	0	0	0	0.027462	1	8195	8195		15.642	12.923	1	480150	+		53534	30259	44275	44311	58229	58229					0.12473997639654044
SKRRHWRRTKL	11	Unmodified	_SKRRHWRRTKL_					0	0	0		ENSG00000198918|ENST00000361575|RPL39;ENSG00000163923|ENST00000296277|RPL39L	ENSG00000198918|ENST00000361575|RPL39	ENSG00000198918|ENST00000361575|RPL39	MULTI-MSMS	OvCa99_classI_Rep5	1	508.64263916015625	3	508.64292	1522.90693	-0.41242	-0.00020977	-0.25806	-0.00013126	-0.67047	-0.00034103	508.6427705830946	29.3	1.099	29.3	28.987	30.086	0					68	21	5	0	0	0	0.7251	1	1063	1063		14.243	1.8104	1	706630			53535	6379	44276	44312	58230	58230					0.16639332636327708
SKRRKRLYDF	10	Unmodified	_SKRRKRLYDF_					0	0	0			REV__ENSG00000162592|ENST00000294600|CCDC27	REV__ENSG00000162592|ENST00000294600|CCDC27	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.2702941894531	3	456.933477	1367.7786	-0.5698	-0.00026036	-2.7838	-0.001272	-3.3536	-0.0015324	456.93200623139626	46.259	0.77983	43.186	42.824	43.604	-3.0724					18	14	2	0	0	0	0.027349	1	2399	2399		6.6596	0	1	31943	+		53536	20749	44277	44313	58231	58231					0.10942352602592109
SKRTYSSSRT	10	Unmodified	_SKRTYSSSRT_					0	0	0			REV__ENSG00000155903|ENST00000286364|RASA2	REV__ENSG00000155903|ENST00000286364|RASA2	MULTI-MSMS	OvCa9_classI_Rep2	2	586.8026733398438	2	586.804551	1171.59455	-5.2111	-0.0030579	2.6168	0.0015355	-2.5943	-0.0015224	586.8058911238584	159.27	2.2635	159.04	158.53	160.79	-0.22696					99	45	3	0	0	0	0.80581	1	16228	16228		18.262	0.89712	1	107570	+		53537	20448	44278	44314	58232	58232					0.01561539381214061
SKSFRRLKH	9	Unmodified	_SKSFRRLKH_					0	0	0		tr|A0A7D6VYD7|A0A7D6VYD7_9CLOTDeoxyguanosinetriphosphatetriphosphohydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16385PE=4SV=1	tr|A0A7D6VYD7|A0A7D6VYD7_9CLOTDeoxyguanosinetriphosphatetriphosphohydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16385PE=4SV=1	tr|A0A7D6VYD7|A0A7D6VYD7_9CLOTDeoxyguanosinetriphosphatetriphosphohydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16385PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.84375	2	579.846356	1157.67816	-7.0884	-0.0041102	3.4938	0.0020259	-3.5946	-0.0020843	579.8482379008053	161.9	0.83498	160.28	159.97	160.81	-1.6239					34	20	2	0	0	0	0.62352	1	15994	15994		29.15	1.2673	1	56400			53538	35329	44279	44315	58233	58233					0.10562740339628363
SKSLKSAS	8	Unmodified	_SKSLKSAS_					0	0	0		nc|ENSG00000133115|Q8TAV4-2|STOML3;ENSG00000133115|ENST00000379631|STOML3	nc|ENSG00000133115|Q8TAV4-2|STOML3	nc|ENSG00000133115|Q8TAV4-2|STOML3	MULTI-MSMS	OvCa9_classI_Rep3	3	404.23223876953125	2	404.232168	806.449782	0.13742	5.5549E-05	1.102	0.00044548	1.2395	0.00050103	404.2323701373438	135.34	2.116	134.24	133.77	135.88	-1.1076					82	42	4	0	0	0	0.73494	1	10953	10953		34.173	0	1	396570			53539	4204	44280	44316	58234	58234					0.038815229720512434
SKSLNWAR	8	Unmodified	_SKSLNWAR_					0	0	0		ENST00000456414.2_1_1:117036288-117036417:-|nuORF	ENST00000456414.2_1_1:117036288-117036417:-|nuORF	ENST00000456414.2_1_1:117036288-117036417:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.2407531738281	2	481.264333	960.514114	0.14193	6.8306E-05	-0.91079	-0.00043833	-0.76886	-0.00037002	481.26528555230715	32.028	0.69581	32.028	31.857	32.553	0					35	13	4	0	0	0	0.028476	1	1358	1358		51.335	10.557	1	93223			53540	12111	44281	44317	58235	58235					0.03227722848839676
SKSPLTLRTPG	11	Unmodified	_SKSPLTLRTPG_					0	0	0			REV__nc|ENSG00000153815|Q8IY22-3|CMIP	REV__nc|ENSG00000153815|Q8IY22-3|CMIP	MULTI-SECPEP	OvCa9_classI_Rep3	3	578.8556518554688	2	578.837862	1155.66117	-0.93521	-0.00054134	0.58167	0.00033669	-0.35354	-0.00020464	578.8379246244581	73.175	0.94217	70.688	70.382	71.324	-2.4873					35	18	3	0	0	0	0.025714	1	3617	3617		31.634	7.1151	1	60964	+		53541	20347	44282	44318	58236	58236					0.08956774943135315
SKSPLTLRTPG	11	Unmodified	_SKSPLTLRTPG_					0	0	0			REV__nc|ENSG00000153815|Q8IY22-3|CMIP	REV__nc|ENSG00000153815|Q8IY22-3|CMIP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	578.837862	1155.66117	-0.54455	-0.00031521	0.5007	0.00028982	-0.043851	-2.5383E-05	578.8379843858276	72.996	0.67599	70.597	70.378	71.054	-2.3999	0.038639	-1.7372E-05	NaN	36.318	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41196	+		53542	20347	44282	44318							0.08956774943135315
SKSRRPDLVVE	11	Unmodified	_SKSRRPDLVVE_					0	0	0		nc|ENSG00000204653|A6ND91-2|ASPDH	nc|ENSG00000204653|A6ND91-2|ASPDH	nc|ENSG00000204653|A6ND91-2|ASPDH	MULTI-SECPEP	OvCa99_classI_Rep5	1	643.2999267578125	2	643.364776	1284.715	2.5411	0.0016349	-1.6648	-0.0010711	0.87631	0.00056379	643.361655452826	100.52	0.57674	100.52	100.19	100.77	0					28	13	4	0	0	0	0.02596	1	11158	11158		8.6937	0	1	1001000			53543	15272	44283	44319	58237	58237					0.08402947374815994
SKSTPDSKT	9	Unmodified	_SKSTPDSKT_					0	0	0			REV__ENSG00000147234|ENST00000683843|FRMPD3	REV__ENSG00000147234|ENST00000683843|FRMPD3	MULTI-MSMS	OvCa99_classI_Rep5	1	475.7437744140625	2	475.743096	949.47164	-0.082022	-3.9022E-05	1.4261	0.00067844	1.344	0.00063942	475.7436720790165	47.313	0.56232	47.313	47.076	47.638	0					27	12	3	0	0	0	0.45842	1	3410	3410		46.457	5.8842	1	725590	+		53544	20054	44284	44320	58238	58238					-0.005117170700373208
SKSVEHVV	8	Unmodified	_SKSVEHVV_					0	0	0			REV__tr|A0A553SPT6|A0A553SPT6_NIACIXylulosekinaseOS=NialliacirculansOX=1397GN=xylBPE=3SV=1	REV__tr|A0A553SPT6|A0A553SPT6_NIACIXylulosekinaseOS=NialliacirculansOX=1397GN=xylBPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	442.7453308105469	2	442.745442	883.476331	0.42686	0.00018899	-0.55674	-0.0002465	-0.12989	-5.7506E-05	442.7451141040245	40.117	0.86774	40.117	39.798	40.666	0					41	18	4	0	0	0	0.67745	1	2412	2412		47.916	3.7988	1	585120	+		53545	30569	44285	44321	58239	58239					0.029932118633723803
SKSVSELL	8	Unmodified	_SKSVSELL_					0	0	0		ENSG00000183742|ENST00000400331|MACC1	ENSG00000183742|ENST00000400331|MACC1	ENSG00000183742|ENST00000400331|MACC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	431.19012451171875	2	431.74765	861.480748	0.37363	0.00016131	1.0753	0.00046426	1.4489	0.00062557	431.7480317584765	52.612	1.2078	49.404	49.044	50.252	-3.208					33	23	2	0	0	0	0.028476	1	3256	3256		23.042	13.572	1	45876			53546	8100	44286	44322	58240	58240					0.04446676286283946
SKTALRLHER	10	Unmodified	_SKTALRLHER_					0	0	0		ENSG00000125812|ENST00000338121|GZF1;ENST00000461789.1_1_20:23345881-23349399:+|nuORF	ENSG00000125812|ENST00000338121|GZF1	ENSG00000125812|ENST00000338121|GZF1	MULTI-MSMS	OvCa9_classI_Rep2	2	605.8563232421875	2	605.854378	1209.6942	-0.016179	-9.8024E-06	2.2455	0.0013605	2.2294	0.0013507	605.8556533984647	132.36	2.1681	132.13	131.83	134	-0.22697					108	43	5	0	0	0	0.39718	2	13061	13061;13080		68.846	5.1545	1	589450			53547	3737	44287	44323	58241;58242	58241					0.09774401785830378
SKTALRLHER	10	Unmodified	_SKTALRLHER_					0	0	0		ENSG00000125812|ENST00000338121|GZF1;ENST00000461789.1_1_20:23345881-23349399:+|nuORF	ENSG00000125812|ENST00000338121|GZF1	ENSG00000125812|ENST00000338121|GZF1	MULTI-MSMS	OvCa9_classI_Rep3	3	605.8555908203125	2	605.854378	1209.6942	1.4544	0.00088118	0.6195	0.00037533	2.0739	0.0012565	605.8546440314993	133.02	1.7212	131.9	131.58	133.3	-1.1249					92	34	4	0	0	0	0.49595	1	10660	10660		54.722	1.7857	1	499230			53548	3737	44287	44323	58243	58243					0.09774401785830378
SKTALRLHER	10	Unmodified	_SKTALRLHER_					0	0	0		ENSG00000125812|ENST00000338121|GZF1;ENST00000461789.1_1_20:23345881-23349399:+|nuORF	ENSG00000125812|ENST00000338121|GZF1	ENSG00000125812|ENST00000338121|GZF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	605.8552856445312	2	605.854378	1209.6942	4.1393	0.0025078	-2.283	-0.0013832	1.8563	0.0011247	605.852935555119	133.3	2.5623	131.77	131.46	134.02	-1.5257					111	51	4	0	0	0	0.45953	1	12852	12852		59.931	10.395	1	751530			53549	3737	44287	44323	58244	58244					0.09774401785830378
SKTIARHIA	9	Unmodified	_SKTIARHIA_					0	0	0		tr|A0A553SL11|A0A553SL11_NIACITyrosinerecombinaseXerDOS=NialliacirculansOX=1397GN=xerDPE=3SV=1	tr|A0A553SL11|A0A553SL11_NIACITyrosinerecombinaseXerDOS=NialliacirculansOX=1397GN=xerDPE=3SV=1	tr|A0A553SL11|A0A553SL11_NIACITyrosinerecombinaseXerDOS=NialliacirculansOX=1397GN=xerDPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.2446594238281	2	498.801083	995.587613	-0.90895	-0.00045339	-0.38427	-0.00019167	-1.2932	-0.00064506	498.80061896632185	50.211	0.25729	50.211	50.031	50.288	0					8	5	2	0	0	0	0.027462	1	3809	3809		15.642	0	1	128030			53550	33674	44288	44324	58245	58245					0.08964271291324621
SKTILPSSRLM	11	Unmodified	_SKTILPSSRLM_					0	0	0			REV__HAL1ME_dup4156|chr7:143607740-143607917:+|1.0314939604094566|0.2094984498410361|2.3|357.0|9|2|anti-sense	REV__HAL1ME_dup4156|chr7:143607740-143607917:+|1.0314939604094566|0.2094984498410361|2.3|357.0|9|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	616.3345947265625	2	616.855198	1231.69584	2.0726	0.0012785	-2.403	-0.0014823	-0.33035	-0.00020378	616.8532296331733	106.06	0.43927	106.06	105.88	106.32	0					24	9	3	0	0	0	0.025814	1	11926	11926		15.333	0	1	558680	+		53551	28165	44289	44325	58246	58246					0.08926274759573971
SKTKSVVLQL	10	Unmodified	_SKTKSVVLQL_					0	0	0		ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.8342895507812	2	551.845156	1101.67576	-0.12124	-6.6904E-05	3.6706	0.0020256	3.5493	0.0019587	551.8470502610511	102.62	1.5182	100.42	99.99	101.51	-2.1994					64	25	4	0	0	0	0.026891	1	9222	9222		31.53	4.8369	1	333260			53552	1419	44290	44326	58247	58247					0.1289884709128728
SKTNFLWEDS	10	Unmodified	_SKTNFLWEDS_					0	0	0		RBFA-SPG11|2|fusion;RBFA-SPG11|1|fusion	RBFA-SPG11|2|fusion	RBFA-SPG11|2|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	613.2788696289062	2	613.788035	1225.56152	2.2681	0.0013922	1.6362	0.0010043	3.9043	0.0023964	613.7887823042372	100.42	0.36818	100.42	100.32	100.69	0					12	8	2	0	0	0	0.027028	1	11122	11122		12.812	0.60503	1	4551700			53553	15543	44291	44327	58248	58248					-0.04224087461466297
SKTSLLTMIL	10	Unmodified	_SKTSLLTMIL_					0	0	0		ENST00000513573.1_1_5:20305944-20331508:+|nuORF	ENST00000513573.1_1_5:20305944-20331508:+|nuORF	ENST00000513573.1_1_5:20305944-20331508:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8311767578125	2	553.828117	1105.64168	2.064	0.0011431	1.6931	0.00093769	3.7571	0.0020808	553.8288797091304	138.06	1.0604	136.53	135.73	136.79	-1.5284					43	23	2	0	0	0	0.67931	1	13430	13430		32.812	4.9302	1	28092			53554	13016	44292	44328	58249	58249					0.09308682608025265
SKTTLGLL	8	Unmodified	_SKTTLGLL_					0	0	0		ENST00000590207.1_1_2:11268741-11272130:-|nuORF	ENST00000590207.1_1_2:11268741-11272130:-|nuORF	ENST00000590207.1_1_2:11268741-11272130:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.9166564941406	2	416.760561	831.506569	-0.76344	-0.00031817	1.7656	0.00073583	1.0022	0.00041766	416.7611863995189	63.945	0.43707	63.945	63.773	64.21	0					15	10	2	0	0	0	0.028476	1	5786	5786		15.642	0	1	299360			53555	14101	44293	44329	58250	58250					0.08407570528561337
SKTTNNEVD	9	Unmodified	_SKTTNNEVD_					0	0	0		nc|ENSG00000111224|Q9NR21-5|PARP11;nc|ENSG00000111224|Q9NR21-1|PARP11;ENSG00000111224|ENST00000228820|PARP11	nc|ENSG00000111224|Q9NR21-5|PARP11	nc|ENSG00000111224|Q9NR21-5|PARP11	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.7825622558594	2	504.235635	1006.45672	0.59014	0.00029757	-1.7781	-0.0008966	-1.188	-0.00059903	504.2345390594079	74.389	0.58308	74.389	74.135	74.718	0					24	14	2	0	0	0	0.027446	1	7362	7362		42.864	0	1	521900			53556	2812	44294	44330	58251	58251					-0.04625208938045944
SKTVNFLDTS	10	Unmodified	_SKTVNFLDTS_					0	0	0			REV__tr|A0A7D6W0K3|A0A7D6W0K3_9CLOTATP-dependenthelicase/deoxyribonucleasesubunitBOS=ClostridiumintestinaleOX=36845GN=addBPE=3SV=1	REV__tr|A0A7D6W0K3|A0A7D6W0K3_9CLOTATP-dependenthelicase/deoxyribonucleasesubunitBOS=ClostridiumintestinaleOX=36845GN=addBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	556.2855834960938	2	556.285128	1110.5557	1.8039	0.0010035	-0.63402	-0.00035269	1.1699	0.00065078	556.2846347321127	29.521	0.87109	26.811	26.636	27.508	-2.7097					46	17	3	0	0	0	0.73378	1	744	744		26.693	0	1	197300	+		53557	31858	44295	44331	58252	58252					0.004848140268450152
SKVAALVNII	10	Unmodified	_SKVAALVNII_					0	0	0			REV__ENST00000460494.3_1_16:1907729-1911986:-|nuORF	REV__ENST00000460494.3_1_16:1907729-1911986:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.3013305664062	2	514.329142	1026.64373	-0.51671	-0.00026576	0.41551	0.00021371	-0.1012	-5.2048E-05	514.3294364702597	104.72	0.77324	102.6	102.32	103.1	-2.1192					20	14	2	0	0	0	0.02676	1	9501	9501		41.427	14.631	1	19813	+		53558	20720	44296	44332	58253	58253					0.13147479408144136
SKVGTFDT	8	Unmodified	_SKVGTFDT_					0	0	0		tr|A0A553SJ22|A0A553SJ22_NIACIImidazoleglycerol-phosphatedehydrataseOS=NialliacirculansOX=1397GN=hisBPE=3SV=1	tr|A0A553SJ22|A0A553SJ22_NIACIImidazoleglycerol-phosphatedehydrataseOS=NialliacirculansOX=1397GN=hisBPE=3SV=1	tr|A0A553SJ22|A0A553SJ22_NIACIImidazoleglycerol-phosphatedehydrataseOS=NialliacirculansOX=1397GN=hisBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	427.7491455078125	2	427.71635	853.418148	-0.1873	-8.0111E-05	1.7844	0.00076321	1.5971	0.0006831	427.71713224925776	54.261	0.28859	54.261	54.089	54.378	0					11	6	2	0	0	0	0.028476	1	4354	4354		55.504	13.108	1	60288			53559	33455	44297	44333	58254	58254					-0.014424697819208632
SKVIPGNGKLL	11	Unmodified	_SKVIPGNGKLL_					0	0	0		nc|ENSG00000112414|Q86SQ4-2|ADGRG6;nc|ENSG00000112414|Q86SQ4|ADGRG6;nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENSG00000112414|ENST00000367609|ADGRG6;ENST00000415128.6_1_6:142623466-142692070:+|nuORF	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	MULTI-MSMS	OvCa9_classI_Rep2	2	563.3521118164062	2	563.353148	1124.69174	-0.51442	-0.0002898	-0.73977	-0.00041675	-1.2542	-0.00070655	563.3531834496299	116.13	2.03	116.01	115.64	117.67	-0.11777					126	40	5	0	0	0	0.4646	1	11159	11159		56.434	8.4743	1	2302900			53560	2904	44298	44334	58255	58255					0.1343855332820567
SKVLIHNI	8	Unmodified	_SKVLIHNI_					0	0	0		tr|A0A7D6VS11|A0A7D6VS11_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21080PE=4SV=1	tr|A0A7D6VS11|A0A7D6VS11_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21080PE=4SV=1	tr|A0A7D6VS11|A0A7D6VS11_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21080PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	461.78436279296875	2	462.287277	922.560001	-0.034399	-1.5902E-05	0.29166	0.00013483	0.25726	0.00011893	462.28715248802393	96.002	1.4835	94.974	94.417	95.9	-1.0281					59	29	3	0	0	0	0.028476	1	8712	8712		21.96	0	1	217480			53561	34974	44299	44335	58256	58256					0.09562368031083679
SKVNKLFII	9	Unmodified	_SKVNKLFII_					0	0	0			REV__ENST00000590359.1_1_17:66890978-66899548:-|nuORF	REV__ENST00000590359.1_1_17:66890978-66899548:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	531.3406372070312	2	531.33951	1060.66447	0.76702	0.00040755	1.4986	0.00079626	2.2656	0.0012038	531.3402607079814	140.29	2.3131	140.29	139.97	142.29	0					124	46	5	0	0	0	0.55011	1	16457	16457		37.812	3.639	1	3646000	+		53562	27917	44300	44336	58257	58257					0.13656069787793967
SKWLSGQQ	8	Unmodified	_SKWLSGQQ_					0	0	0		chrX:47198628-47198803|192|17.51|0.83|4.39|+|2|TE_info:MIR,MIR_dup97087,MIR,SINE,donor,+,47198563,47198628|None,UBA1|1	chrX:47198628-47198803|192|17.51|0.83|4.39|+|2|TE_info:MIR,MIR_dup97087,MIR,SINE,donor,+,47198563,47198628|None,UBA1|1	chrX:47198628-47198803|192|17.51|0.83|4.39|+|2|TE_info:MIR,MIR_dup97087,MIR,SINE,donor,+,47198563,47198628|None,UBA1|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.23004150390625	2	467.243067	932.47158	-0.7782	-0.00036361	-1.2569	-0.00058727	-2.0351	-0.00095088	467.24228992602644	37.169	0.32269	37.169	37.069	37.391	0					10	6	2	0	0	0	0.028476	1	2008	2008		25.574	8.106	1	60499			53563	569	44301	44337	58258	58258					0.0026432772062889853
SKYVNFEI	8	Unmodified	_SKYVNFEI_					0	0	0		tr|A0A7D7A3L8|A0A7D7A3L8_9CLOTIsoleucine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=ileSPE=3SV=1	tr|A0A7D7A3L8|A0A7D7A3L8_9CLOTIsoleucine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=ileSPE=3SV=1	tr|A0A7D7A3L8|A0A7D7A3L8_9CLOTIsoleucine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=ileSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.82623291015625	2	500.260925	998.507297	-0.38831	-0.00019426	-4.3067	-0.0021545	-4.6951	-0.0023488	500.25860425163023	61.956	1.0185	58.498	58.29	59.309	-3.4577					30	20	2	0	0	0	0.028476	1	4334	4334		32.812	0	1	147410			53564	36119	44302	44338	58259	58259					0.007983651776157785
SLADIAQKL	9	Unmodified	_SLADIAQKL_					0	0	0		nc|ENSG00000108344|O43242-2|PSMD3;ENST00000415039.7_1_17:38140716-38152959:+|nuORF;ENSG00000108344|ENST00000264639|PSMD3;ENST00000485835.1_1_17:38151035-38151804:+|nuORF	nc|ENSG00000108344|O43242-2|PSMD3	nc|ENSG00000108344|O43242-2|PSMD3	MULTI-MSMS	OvCa99_classI_Rep5	1	479.7834777832031	2	479.782025	957.549496	2.0393	0.00097844	-0.076013	-3.647E-05	1.9633	0.00094197	479.7817353785541	102.98	0.50238	102.98	102.72	103.22	0					28	11	3	0	0	0	0.025955	1	11492	11492		139.97	17.794	1	1602600			53565	2646	44303	44339	58260	58260					0.06902340586009359
SLADVHIEV	9	Unmodified	_SLADVHIEV_					0	0	0		ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	ENSG00000095564|ENST00000265990|BTAF1	MULTI-MSMS	OvCa99_classI_Rep5	1	491.7650451660156	2	491.763832	981.513111	0.23432	0.00011523	1.9332	0.00095068	2.1675	0.0010659	491.7647215308243	101.54	1.0592	101.54	101.19	102.25	0					73	24	6	0	0	0	0.068524	2	11309	11281;11309		108.09	28.148	1	3616900			53566	1932	44304	44340	58261;58262	58262					0.02161463689287757
SLAEGLRTV	9	Unmodified	_SLAEGLRTV_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MULTI-MSMS	OvCa99_classI_Rep5	1	473.2734069824219	2	473.271824	944.529095	2.7105	0.0012828	-0.50751	-0.00024019	2.203	0.0010426	473.2713545054839	75.225	0.52049	75.225	74.962	75.482	0					41	12	4	0	0	0	0.010478	2	7459	7459;7486		167.23	51.735	1	17024000			53567	2822	44305	44341	58263;58264	58263					0.05461169926184084
SLAEGLRTV	9	Unmodified	_SLAEGLRTV_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MULTI-MSMS	OvCa9_classI_Rep3	3	473.2713623046875	2	473.271824	944.529095	-0.060096	-2.8442E-05	-0.29102	-0.00013773	-0.35112	-0.00016617	473.27161614144825	77.684	1.2067	75.331	74.942	76.149	-2.3527					67	23	4	0	0	0	0.010478	4	4095	4075;4081;4089;4095		167.23	45.053	1	1226800			53568	2822	44305	44341	58265;58266;58267;58268	58268					0.05461169926184084
SLAEGLRTV	9	Unmodified	_SLAEGLRTV_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.272216796875	2	473.271824	944.529095	0.75568	0.00035764	-1.0394	-0.00049193	-0.28374	-0.00013429	473.27120804664145	78.539	1.1368	75.727	75.365	76.502	-2.8119					64	23	4	0	0	0	0.051592	2	6325	6325;6338		117.81	24.668	1	1215000			53569	2822	44305	44341	58269;58270	58269					0.05461169926184084
SLAEGLRTV	9	Unmodified	_SLAEGLRTV_					0	0	0		ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	473.271824	944.529095	-0.44539	-0.00021079	0.26575	0.00012577	-0.17963	-8.5016E-05	473.2718445602369	77.595	1.4121	75.806	75.103	76.515	-1.7894	0.039302	0.00033842	NaN	117.81	65	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	454960			53570	2822	44305	44341							0.05461169926184084
SLAEGRLYL	9	Unmodified	_SLAEGRLYL_					0	0	0		nc|ENSG00000135931|Q7Z3E5-2|ARMC9;ENSG00000135931|ENST00000611582|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	MULTI-MSMS	OvCa99_classI_Rep5	1	511.28851318359375	2	511.287474	1020.5604	1.3574	0.00069403	0.77297	0.00039521	2.1304	0.0010892	511.28750324002795	93.485	0.87093	93.485	93.093	93.964	0					76	19	6	0	0	0	0.070405	1	10144	10144		107.01	30.233	1	9807100			53571	4434	44306	44342	58271	58271					0.05093742960275449
SLAEGRLYL	9	Unmodified	_SLAEGRLYL_					0	0	0		nc|ENSG00000135931|Q7Z3E5-2|ARMC9;ENSG00000135931|ENST00000611582|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	MULTI-MSMS	OvCa9_classI_Rep2	2	511.28680419921875	2	511.287474	1020.5604	-0.36362	-0.00018591	0.34601	0.00017691	-0.017605	-9.0014E-06	511.2876381020032	94.821	2.0263	93.721	93.114	95.14	-1.0995					97	35	5	0	0	0	0.070405	8	8506	8495;8500;8506;8512;8518;8524;8531;8538		107.01	16.638	1	997620			53572	4434	44306	44342	58272;58273;58274;58275;58276;58277;58278;58279	58274					0.05093742960275449
SLAEGRLYL	9	Unmodified	_SLAEGRLYL_					0	0	0		nc|ENSG00000135931|Q7Z3E5-2|ARMC9;ENSG00000135931|ENST00000611582|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	MULTI-MSMS	OvCa9_classI_Rep3	3	511.2893371582031	2	511.287474	1020.5604	-0.69633	-0.00035602	0.72327	0.0003698	0.026937	1.3773E-05	511.2878177915451	95.618	1.9135	93.789	93.277	95.191	-1.8286					112	35	6	0	0	0	0.094616	7	6245	6235;6239;6245;6251;6257;6263;6269		98.629	32.2	1	1310900			53573	4434	44306	44342	58280;58281;58282;58283;58284;58285;58286	58282					0.05093742960275449
SLAEGRLYL	9	Unmodified	_SLAEGRLYL_					0	0	0		nc|ENSG00000135931|Q7Z3E5-2|ARMC9;ENSG00000135931|ENST00000611582|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.2888488769531	2	511.287474	1020.5604	0.012984	6.6386E-06	0.033611	1.7185E-05	0.046595	2.3823E-05	511.28747165700065	96.247	1.9151	93.821	93.254	95.169	-2.4256					85	33	5	0	0	0	0.10502	2	8492	8483;8492		95.815	26.188	1	1242600			53574	4434	44306	44342	58287;58288	58288					0.05093742960275449
SLAEILLKK	9	Unmodified	_SLAEILLKK_					0	0	0		nc|ENSG00000133704|O15397-2|IPO8;ENSG00000133704|ENST00000256079|IPO8;ENSG00000205339|ENST00000379719|IPO7	nc|ENSG00000133704|O15397-2|IPO8;ENSG00000205339|ENST00000379719|IPO7	ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.83343505859375	2	507.831517	1013.64848	-0.96956	-0.00049237	0.58177	0.00029544	-0.38778	-0.00019693	507.83168867167734	91.971	1.7665	89.428	89.061	90.828	-2.5425					93	34	4	0	0	0	0.44568	1	7989	7989		47.657	1.7054	1	508360			53575	9068;4232	44307	44343	58289	58289					0.14220363550907678
SLAEKIQAL	9	Unmodified	_SLAEKIQAL_					0	0	0		ASB6|p.K406Efs*14|1|0.07|ENSG00000148331|chr9:129637840-129637841|-/GAGCTGAGATTGCGCCACTGCACTC|frameshift_variant;ENSG00000148331|ENST00000277458|ASB6	ASB6|p.K406Efs*14|1|0.07|ENSG00000148331|chr9:129637840-129637841|-/GAGCTGAGATTGCGCCACTGCACTC|frameshift_variant	ASB6|p.K406Efs*14|1|0.07|ENSG00000148331|chr9:129637840-129637841|-/GAGCTGAGATTGCGCCACTGCACTC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	486.79022216796875	2	486.78985	971.565146	1.5507	0.00075484	0.45602	0.00022199	2.0067	0.00097683	486.7898751729767	87.524	0.58051	87.524	87.257	87.838	0					28	13	3	0	0	0	0.14445	1	9263	9263		85.862	6.1492	1	1944200			53576	121	44308	44344	58290	58290					0.07822627103041668
SLAELVHAV	9	Unmodified	_SLAELVHAV_					0	0	0		nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1;nc|ENSG00000080546|Q9Y6P5-3|SESN1	nc|ENSG00000080546|Q9Y6P5|SESN1	nc|ENSG00000080546|Q9Y6P5|SESN1	MULTI-MSMS	OvCa99_classI_Rep5	1	469.7703552246094	2	469.768917	937.523281	-0.078975	-3.71E-05	0.20857	9.7981E-05	0.1296	6.0882E-05	469.76889449059485	104.86	0.6496	104.86	104.62	105.27	0					29	14	3	0	0	0	0.037627	1	11761	11761		128.86	27.65	1	1034300			53577	14899	44309	44345	58291	58291					0.0520207141452147
SLAELVHAV	9	Unmodified	_SLAELVHAV_					0	0	0		nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1;nc|ENSG00000080546|Q9Y6P5-3|SESN1	nc|ENSG00000080546|Q9Y6P5|SESN1	nc|ENSG00000080546|Q9Y6P5|SESN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	469.7701110839844	2	469.768917	937.523281	-1.4301	-0.00067182	1.2263	0.00057609	-0.20378	-9.5729E-05	469.7694082361664	107.51	1.0826	105.63	105.38	106.46	-1.8785					38	21	2	0	0	0	0.071436	1	9821	9821		106.42	26.476	1	174520			53578	14899	44309	44345	58292	58292					0.0520207141452147
SLAELVHAV	9	Unmodified	_SLAELVHAV_					0	0	0		nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1;nc|ENSG00000080546|Q9Y6P5-3|SESN1	nc|ENSG00000080546|Q9Y6P5|SESN1	nc|ENSG00000080546|Q9Y6P5|SESN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	469.768917	937.523281	-0.51418	-0.00024155	-0.40506	-0.00019028	-0.91924	-0.00043183	469.76908121057886	105.14	0.54334	104.71	104.46	105	-0.43642	0.014544	-0.00042528	NaN	128.86	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13579			53579	14899	44309	44345							0.0520207141452147
SLAELVHAV	9	Unmodified	_SLAELVHAV_					0	0	0		nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1;nc|ENSG00000080546|Q9Y6P5-3|SESN1	nc|ENSG00000080546|Q9Y6P5|SESN1	nc|ENSG00000080546|Q9Y6P5|SESN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	469.768917	937.523281	-0.26397	-0.00012401	0.099598	4.6788E-05	-0.16437	-7.7218E-05	469.7688891414624	106.01	1.7383	105.57	105.35	107.09	-0.43642	-0.050258	-8.2178E-05	NaN	106.42	66	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139280			53580	14899	44309	44345							0.0520207141452147
SLAELVHAV	9	Unmodified	_SLAELVHAV_					0	0	0		nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1;nc|ENSG00000080546|Q9Y6P5-3|SESN1	nc|ENSG00000080546|Q9Y6P5|SESN1	nc|ENSG00000080546|Q9Y6P5|SESN1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	469.768917	937.523281	0.71085	0.00033393	-1.0194	-0.0004789	-0.30859	-0.00014497	469.7682791752834	106.92	2.0198	105.66	105.37	107.39	-1.267	0.037754	-0.0011336	NaN	106.42	64	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178120			53581	14899	44309	44345							0.0520207141452147
SLAELVHAV	9	Unmodified	_SLAELVHAV_					0	0	0		nc|ENSG00000080546|Q9Y6P5|SESN1;ENSG00000080546|ENST00000436639|SESN1;nc|ENSG00000080546|Q9Y6P5-3|SESN1	nc|ENSG00000080546|Q9Y6P5|SESN1	nc|ENSG00000080546|Q9Y6P5|SESN1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	469.768917	937.523281	-0.45015	-0.00021147	-0.037308	-1.7526E-05	-0.48746	-0.00022899	469.7688429642917	106.52	0.72292	104.51	104.26	104.98	-2.0161	-0.18276	-7.9765E-05	NaN	128.86	14	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14217			53582	14899	44309	44345							0.0520207141452147
SLAEQIANQLQ	11	Unmodified	_SLAEQIANQLQ_					0	0	0		nc|ENSG00000243156|Q7RTP6-5|MICAL3	nc|ENSG00000243156|Q7RTP6-5|MICAL3	nc|ENSG00000243156|Q7RTP6-5|MICAL3	MULTI-MSMS	OvCa9_classI_Rep2	2	405.55267333984375	3	405.550698	1213.63027	0.74305	0.00030134	3.7439	0.0015183	4.4869	0.0018197	405.5521875633834	47.39	1.9857	44.68	44.242	46.228	-2.7097					104	39	4	0	0	0	0.69308	1	2905	2905		32.034	2.4834	1	303990			53583	15342	44310	44346	58293	58293					0.031995768382330425
SLAEVLQQL	9	Unmodified	_SLAEVLQQL_					0	0	0		ENST00000482694.1_1_2:85577073-85578124:-|nuORF;nc|ENSG00000042445|Q6NUM9-2|RETSAT;ENSG00000042445|ENST00000295802|RETSAT	ENST00000482694.1_1_2:85577073-85578124:-|nuORF	ENST00000482694.1_1_2:85577073-85578124:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	500.7890930175781	2	500.787307	999.560061	1.1391	0.00057045	0.63551	0.00031826	1.7746	0.00088871	500.7872628824812	145.11	0.88631	145.11	144.79	145.68	0					41	18	3	0	0	0	0.068524	2	16983	16959;16983		108.09	5.4339	1	248730			53584	1123	44311	44347	58294;58295	58295					0.06026323240439524
SLAGRVDL	8	Unmodified	_SLAGRVDL_					0	0	0		ENST00000527357.5_1_11:803400-803736:-|nuORF	ENST00000527357.5_1_11:803400-803736:-|nuORF	ENST00000527357.5_1_11:803400-803736:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	416.2512512207031	2	415.74016	829.465767	-0.043807	-1.8212E-05	-0.065814	-2.7361E-05	-0.10962	-4.5574E-05	415.73997989155947	63.797	1.1615	60.322	60.109	61.271	-3.475					32	23	2	0	0	0	0.028476	1	4575	4575		11.511	0	1	99165			53585	13232	44312	44348	58296	58296					0.044212292089468974
SLAHKLESI	9	Unmodified	_SLAHKLESI_					0	0	0			REV__ENSG00000129167|ENST00000682019|TPH1	REV__ENSG00000129167|ENST00000682019|TPH1	MULTI-MSMS	OvCa9_classI_Rep2	2	499.285888671875	2	499.287474	996.560395	1.4373	0.00071765	-4.0729	-0.0020335	-2.6355	-0.0013159	499.2852483844891	28.641	0.87767	25.931	25.716	26.594	-2.7097					28	18	3	0	0	0	0.63422	1	626	626		27.882	3.6795	1	139830	+		53586	18887	44313	44349	58297	58297					0.061977429602734446
SLAIENRP	8	Unmodified	_SLAIENRP_					0	0	0			REV__tr|A0A553SLU0|A0A553SLU0_NIACIMetallothioltransferaseFosBOS=NialliacirculansOX=1397GN=fosBPE=3SV=1	REV__tr|A0A553SLU0|A0A553SLU0_NIACIMetallothioltransferaseFosBOS=NialliacirculansOX=1397GN=fosBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.2521667480469	2	450.250892	898.48723	0.8347	0.00037582	-1.3234	-0.00059585	-0.48867	-0.00022002	450.25017967946644	61.236	0.96881	57.805	57.395	58.364	-3.43					55	19	5	0	0	0	0.61436	1	4187	4187		60.972	2.19	1	432320	+		53587	30263	44314	44350	58298	58298					0.03392614237657199
SLAKEALPV	9	Unmodified	_SLAKEALPV_					0	0	0			REV__ENSG00000235106|ENST00000603928|BRD3OS	REV__ENSG00000235106|ENST00000603928|BRD3OS	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.2566833496094	2	464.279118	926.543683	-1.0006	-0.00046456	0.8113	0.00037667	-0.18929	-8.7885E-05	464.27930928166757	65.637	1.5087	62.152	61.84	63.349	-3.4854					67	30	4	0	0	0	0.027462	1	4877	4877		35.618	7.736	1	579410	+		53588	23404	44315	44351	58299	58299					0.07747242074322003
SLALGLELK	9	Unmodified	_SLALGLELK_					0	0	0		tr|A0A553SJG8|A0A553SJG8_NIACIHD-GYPdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16740PE=4SV=1	tr|A0A553SJG8|A0A553SJG8_NIACIHD-GYPdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16740PE=4SV=1	tr|A0A553SJG8|A0A553SJG8_NIACIHD-GYPdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16740PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.2768859863281	2	472.294768	942.574983	2.1089	0.00099604	-2.0112	-0.00094988	0.097733	4.6159E-05	472.29372781560465	85.848	0.89581	83.202	82.896	83.792	-2.6463					31	17	2	0	0	0	0.027304	1	7292	7292		87.696	5.4559	1	168450			53589	33502	44316	44352	58300	58300					0.1013981510842541
SLALPAVTSV	10	Unmodified	_SLALPAVTSV_					0	0	0		GOLGA6A|p.P290L|1|0.23|ENSG00000159289|chr15:74074980-74074980|G/A|missense_variant	GOLGA6A|p.P290L|1|0.23|ENSG00000159289|chr15:74074980-74074980|G/A|missense_variant	GOLGA6A|p.P290L|1|0.23|ENSG00000159289|chr15:74074980-74074980|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.7367248535156	2	479.2844	956.554247	2.2635	0.0010849	-4.4219	-0.0021193	-2.1583	-0.0010345	479.28317465442746	95.319	0.92369	95.319	94.732	95.656	0					31	21	2	0	0	0	0.026553	1	10374	10374		47.657	1.7054	1	418140			53590	14345	44317	44353	58301	58301					0.07423224728768218
SLALPLFYV	9	Unmodified	_SLALPLFYV_					0	0	0		ENST00000593393.1_1_19:58917799-58918078:-|nuORF	ENST00000593393.1_1_19:58917799-58918078:-|nuORF	ENST00000593393.1_1_19:58917799-58918078:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	512.2542114257812	2	511.799686	1021.58482	-0.23084	-0.00011814	-4.2801	-0.0021905	-4.5109	-0.0023087	511.79737288701546	86.364	1.5854	84.874	84.146	85.732	-1.4906					65	30	3	0	0	0	0.027462	1	7477	7477		33.516	3.1979	1	238940			53591	14154	44318	44354	58302	58302					0.07489003113801118
SLALSSVVVD	10	Unmodified	_SLALSSVVVD_					0	0	0		TG|p.S2274Lfs*71|1|0.03|ENSG00000042832|chr8:133019639-133019640|-/TG|frameshift_variant;nc|ENSG00000042832|P01266-2|TG;ENSG00000042832|ENST00000220616|TG	TG|p.S2274Lfs*71|1|0.03|ENSG00000042832|chr8:133019639-133019640|-/TG|frameshift_variant	TG|p.S2274Lfs*71|1|0.03|ENSG00000042832|chr8:133019639-133019640|-/TG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.28704833984375	2	495.279315	988.544076	1.0008	0.00049566	4.4455	0.0022017	5.4462	0.0026974	495.2806830288925	84.686	1.0901	82.023	81.504	82.594	-2.6629					38	22	2	0	0	0	0.026523	1	7099	7099		58.782	10.866	1	37085			53592	1127	44319	44355	58303	58303					0.04934617003527819
SLALSWKV	8	Unmodified	_SLALSWKV_					0	0	0			REV__nc|ENSG00000125885|Q9UJA3-4|MCM8	REV__nc|ENSG00000125885|Q9UJA3-4|MCM8	MULTI-SECPEP	OvCa99_classI_Rep5	1	451.2865905761719	2	452.268553	902.522553	3.1503	0.0014248	0.64597	0.00029215	3.7962	0.0017169	452.2686436623468	90.185	0.58778	90.185	89.722	90.31	0					20	13	3	0	0	0	0.028476	1	9619	9619		12.959	0	1	146030	+		53593	28834	44320	44356	58304	58304					0.06739276765472368
SLALYRRH	8	Unmodified	_SLALYRRH_					0	0	0			REV__ENST00000360222.8_1_19:14857708-14876689:-|nuORF	REV__ENST00000360222.8_1_19:14857708-14876689:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.29437255859375	2	508.293425	1014.5723	-1.3356	-0.00067885	1.0368	0.00052702	-0.29871	-0.00015183	508.2935798096152	44.147	0.70551	41.14	40.989	41.695	-3.0074					27	13	4	0	0	0	0.62934	1	2171	2171		57.811	13.694	1	237960	+		53594	24824	44321	44357	58305	58305					0.06559404494134924
SLANETHQL	9	Unmodified	_SLANETHQL_					0	0	0		nc|ENSG00000168884|Q8NFZ5-2|TNIP2;ENSG00000168884|ENST00000315423|TNIP2;ENST00000507686.1_1_4:2747118-2749660:-|nuORF;ENST00000511352.1_1_4:2749267-2757702:-|nuORF;TNIP2|p.H163Pfs*51|1|0.22|ENSG00000168884|chr4:2747734-2747734|T/-|frameshift_variant	nc|ENSG00000168884|Q8NFZ5-2|TNIP2	nc|ENSG00000168884|Q8NFZ5-2|TNIP2	MULTI-MSMS	OvCa99_classI_Rep5	1	506.7581481933594	2	506.756538	1011.49852	0.16919	8.5736E-05	-0.51794	-0.00026247	-0.34875	-0.00017673	506.756169113822	57.461	0.76225	57.461	57.221	57.984	0					42	17	4	0	0	0	0.021573	1	4823	4823		145.16	54.786	1	2900400			53595	6950	44322	44358	58306	58306					-0.006766084588548438
SLANETHQL	9	Unmodified	_SLANETHQL_					0	0	0		nc|ENSG00000168884|Q8NFZ5-2|TNIP2;ENSG00000168884|ENST00000315423|TNIP2;ENST00000507686.1_1_4:2747118-2749660:-|nuORF;ENST00000511352.1_1_4:2749267-2757702:-|nuORF;TNIP2|p.H163Pfs*51|1|0.22|ENSG00000168884|chr4:2747734-2747734|T/-|frameshift_variant	nc|ENSG00000168884|Q8NFZ5-2|TNIP2	nc|ENSG00000168884|Q8NFZ5-2|TNIP2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	506.756538	1011.49852	-1.182	-0.00059898	2.1995	0.0011146	1.0175	0.00051565	507.2597131593969	60.587	0.63625	57.817	57.553	58.19	-2.7702	0.11989	0.0025986	NaN	145.16	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37967			53596	6950	44322	44358							-0.006766084588548438
SLANNVTSV	9	Unmodified	_SLANNVTSV_					0	0	0		ENSG00000057019|ENST00000326840|DCBLD2;nc|ENSG00000057019|Q96PD2-2|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	ENSG00000057019|ENST00000326840|DCBLD2	MULTI-MSMS	OvCa99_classI_Rep5	1	452.74176025390625	2	452.740357	903.46616	2.4102	0.0010912	-0.43815	-0.00019837	1.9721	0.00089283	452.7402163661493	78.552	0.5346	78.552	78.335	78.869	0					21	12	2	0	0	0	0.014964	1	7969	7969		153.04	28.442	1	700590			53597	1232	44323	44359	58307	58307					0.010566041381594005
SLAPLFFKL	9	Unmodified	_SLAPLFFKL_					0	0	0		nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1	nc|ENSG00000065000|O14617-4|AP3D1	nc|ENSG00000065000|O14617-4|AP3D1	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.3184814453125	2	518.315503	1034.61645	1.2927	0.00067005	1.6545	0.00085753	2.9472	0.0015276	518.3163014324844	138.42	1.5254	136.89	136.44	137.96	-1.5284					73	32	3	0	0	0	0.67509	1	13467	13467		23.042	1.3402	1	110380			53598	1312	44324	44360	58308	58308					0.10052995867749814
SLAPLFFKL	9	Unmodified	_SLAPLFFKL_					0	0	0		nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1	nc|ENSG00000065000|O14617-4|AP3D1	nc|ENSG00000065000|O14617-4|AP3D1	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.3168334960938	2	518.315503	1034.61645	0.84383	0.00043737	0.18651	9.6672E-05	1.0303	0.00053404	518.3154752182903	139.75	1.2224	138.26	137.89	139.11	-1.4952					55	23	3	0	0	0	0.31747	3	13623	13623;13647;13658		60.972	23.813	1	49596			53599	1312	44324	44360	58309;58310;58311	58309					0.10052995867749814
SLAPLFFKL	9	Unmodified	_SLAPLFFKL_					0	0	0		nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1	nc|ENSG00000065000|O14617-4|AP3D1	nc|ENSG00000065000|O14617-4|AP3D1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	518.315503	1034.61645	-0.50526	-0.00026188	1.9848	0.0010288	1.4796	0.00076688	518.3164867023814	138.19	1.2704	137.96	137.39	138.66	-0.22697	-0.1481	0.0010793	NaN	60.972	46	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34437			53600	1312	44324	44360							0.10052995867749814
SLAPLPTKLS	10	Unmodified	_SLAPLPTKLS_					0	0	0		chr12:21234299-21292164|122|10.14|0.05|7.6|-|2|TE_info:LTR8,LTR8_dup2354,ERV1,LTR,acceptor,-,21233930,21234299|None,SLCO1A2|5	chr12:21234299-21292164|122|10.14|0.05|7.6|-|2|TE_info:LTR8,LTR8_dup2354,ERV1,LTR,acceptor,-,21233930,21234299|None,SLCO1A2|5	chr12:21234299-21292164|122|10.14|0.05|7.6|-|2|TE_info:LTR8,LTR8_dup2354,ERV1,LTR,acceptor,-,21233930,21234299|None,SLCO1A2|5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.7880249023438	2	513.813325	1025.6121	-0.096787	-4.973E-05	0.52002	0.00026719	0.42323	0.00021746	513.813557377629	38.986	0.74485	36.06	35.75	36.495	-2.9264					32	14	4	0	0	0	0.026752	1	1609	1609		53.351	0.41475	1	78025			53601	312	44325	44361	58312	58312					0.10031486654179389
SLAPLVHLV	9	Unmodified	_SLAPLVHLV_					0	0	0		chr17:50197785-50198161|129|344.38|0.56|9.27|-|1|COL1A1,COL1A1|1	chr17:50197785-50198161|129|344.38|0.56|9.27|-|1|COL1A1,COL1A1|1	chr17:50197785-50198161|129|344.38|0.56|9.27|-|1|COL1A1,COL1A1|1	MULTI-MSMS	OvCa99_classI_Rep5	1	474.79888916015625	2	474.797478	947.580402	2.0073	0.00095306	-0.19393	-9.2078E-05	1.8134	0.00086098	474.79724201771654	115.47	0.79358	115.47	115.12	115.91	0					37	16	3	0	0	0	0.52083	1	13173	13173		40.573	3.4135	1	637510			53602	390	44326	44362	58313	58313					0.10451538690904272
SLAPLVHLV	9	Unmodified	_SLAPLVHLV_					0	0	0		chr17:50197785-50198161|129|344.38|0.56|9.27|-|1|COL1A1,COL1A1|1	chr17:50197785-50198161|129|344.38|0.56|9.27|-|1|COL1A1,COL1A1|1	chr17:50197785-50198161|129|344.38|0.56|9.27|-|1|COL1A1,COL1A1|1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	474.797478	947.580402	-0.6673	-0.00031683	0.42519	0.00020188	-0.24211	-0.00011495	474.7976501017067	115.46	0.64146	115.35	115.1	115.74	-0.11777	-0.065682	0.0004501	NaN	40.573	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19545			53603	390	44326	44362							0.10451538690904272
SLAPLVHLV	9	Unmodified	_SLAPLVHLV_					0	0	0		chr17:50197785-50198161|129|344.38|0.56|9.27|-|1|COL1A1,COL1A1|1	chr17:50197785-50198161|129|344.38|0.56|9.27|-|1|COL1A1,COL1A1|1	chr17:50197785-50198161|129|344.38|0.56|9.27|-|1|COL1A1,COL1A1|1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	474.797478	947.580402	0.17247	8.1888E-05	-0.027332	-1.2977E-05	0.14514	6.8911E-05	474.79734175682205	116.46	0.88943	115.41	115.09	115.98	-1.0414	0.0032782	2.0388E-05	NaN	40.573	21	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20844			53604	390	44326	44362							0.10451538690904272
SLAPLVHLV	9	Unmodified	_SLAPLVHLV_					0	0	0		chr17:50197785-50198161|129|344.38|0.56|9.27|-|1|COL1A1,COL1A1|1	chr17:50197785-50198161|129|344.38|0.56|9.27|-|1|COL1A1,COL1A1|1	chr17:50197785-50198161|129|344.38|0.56|9.27|-|1|COL1A1,COL1A1|1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	474.797478	947.580402	0.42303	0.00020085	-0.46715	-0.0002218	-0.044119	-2.0947E-05	474.79704282496766	116.78	0.92358	115.42	114.8	115.72	-1.3645	0.0076024	-0.00039726	NaN	40.573	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16033			53605	390	44326	44362							0.10451538690904272
SLAQYLINV	9	Unmodified	_SLAQYLINV_					0	0	0		nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF	nc|ENSG00000197111|Q15366-7|PCBP2	nc|ENSG00000197111|Q15366-7|PCBP2	MULTI-MSMS	OvCa99_classI_Rep5	1	510.7909240722656	2	510.78985	1019.56515	0.72665	0.00037117	1.2412	0.00063398	1.9678	0.0010051	510.7904193011374	141.41	2.0384	141.41	141.03	143.07	0					83	40	4	0	0	0	0.013371	3	16526	16504;16526;16550		158.07	59.445	1	2508200			53606	8677	44327	44363	58314;58315;58316	58315					0.056146271030456774
SLAQYLINV	9	Unmodified	_SLAQYLINV_					0	0	0		nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF	nc|ENSG00000197111|Q15366-7|PCBP2	nc|ENSG00000197111|Q15366-7|PCBP2	MULTI-MSMS	OvCa9_classI_Rep2	2	510.7898254394531	2	510.78985	1019.56515	-1.035	-0.00052868	0.90213	0.0004608	-0.13289	-6.7877E-05	510.790192219172	139.31	1.2779	139.08	138.81	140.09	-0.22696					65	25	4	0	0	0	0.021573	8	13910	13900;13904;13910;13916;13922;13928;13935;13942		145.16	51.96	1	231800			53607	8677	44327	44363	58317;58318;58319;58320;58321;58322;58323;58324	58319					0.056146271030456774
SLAQYLINV	9	Unmodified	_SLAQYLINV_					0	0	0		nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF	nc|ENSG00000197111|Q15366-7|PCBP2	nc|ENSG00000197111|Q15366-7|PCBP2	MULTI-MSMS	OvCa9_classI_Rep3	3	510.7890930175781	2	510.78985	1019.56515	-2.0469	-0.0010455	1.6733	0.0008547	-0.37358	-0.00019082	510.790722150222	140.16	1.6221	139.13	138.79	140.41	-1.0339					94	32	6	0	0	0	0.033166	7	11531	11516;11519;11525;11531;11537;11543;11549		132.76	36.326	1	232730			53608	8677	44327	44363	58325;58326;58327;58328;58329;58330;58331	58328					0.056146271030456774
SLAQYLINV	9	Unmodified	_SLAQYLINV_					0	0	0		nc|ENSG00000197111|Q15366-7|PCBP2;nc|ENSG00000197111|Q15366-8|PCBP2;nc|ENSG00000197111|Q15366-4|PCBP2;nc|ENSG00000197111|Q15366-5|PCBP2;nc|ENSG00000197111|Q15366-6|PCBP2;ENSG00000197111|ENST00000546463|PCBP2;nc|ENSG00000197111|Q15366|PCBP2;nc|ENSG00000197111|Q15366-2|PCBP2;ENST00000547048.5_1_12:53862529-53873223:+|nuORF;ENST00000517662.1_1_8:75515525-75516083:-|nuORF	nc|ENSG00000197111|Q15366-7|PCBP2	nc|ENSG00000197111|Q15366-7|PCBP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.7906188964844	2	510.78985	1019.56515	0.67884	0.00034675	-0.92845	-0.00047424	-0.24961	-0.0001275	510.78926703458467	140.61	1.1857	139.12	138.81	139.99	-1.4952					61	22	4	0	0	0	0.043101	4	13728	13708;13716;13728;13741		124.08	46.763	1	202710			53609	8677	44327	44363	58332;58333;58334;58335	58334					0.056146271030456774
SLAQYNPKL	9	Unmodified	_SLAQYNPKL_					0	0	0		ENSG00000145675|ENST00000521381|PIK3R1;nc|ENSG00000145675|P27986-4|PIK3R1;nc|ENSG00000145675|P27986-5|PIK3R1;nc|ENSG00000145675|P27986-3|PIK3R1;nc|ENSG00000145675|P27986-2|PIK3R1;ENST00000520550.1_1_5:67588878-67591317:+|nuORF;PIK3R3|p.S297Lfs*6|1|0.02|ENSG00000117461|chr1:46055848-46055849|-/ACCTCTGCCTCCCAGG|frameshift_variant;PIK3R3|p.S297Afs*7|1|0.03|ENSG00000117461|chr1:46055847-46055848|-/GC|frameshift_variant;nc|ENSG00000117461|Q92569-3|PIK3R3;nc|ENSG00000117461|Q92569-2|PIK3R3;ENSG00000117461|ENST00000262741|PIK3R3	ENSG00000145675|ENST00000521381|PIK3R1	ENSG00000145675|ENST00000521381|PIK3R1	MULTI-MSMS	OvCa99_classI_Rep5	1	517.2893676757812	2	517.287474	1032.5604	1.8378	0.00095067	-0.0087524	-4.5275E-06	1.8291	0.00094615	517.287437240853	77.252	0.83437	77.252	76.922	77.757	0					42	19	3	0	0	0	0.029147	2	7770	7770;7799		136.27	48.572	1	3928300			53610	5235	44328	44364	58336;58337	58336					0.04541742960282136
SLARHLSDA	9	Unmodified	_SLARHLSDA_					0	0	0		nc|ENSG00000146426|Q8IVF5-3|TIAM2;nc|ENSG00000146426|Q8IVF5-4|TIAM2;TIAM2|p.L1515Yfs*5|1|0.15|ENSG00000146426|chr6:155256558-155256559|-/A|frameshift_variant;ENSG00000146426|ENST00000682666|TIAM2;nc|ENSG00000146426|Q8IVF5-5|TIAM2;nc|ENSG00000146426|Q8IVF5-2|TIAM2;ENST00000546145.1_1_6:155561684-155565944:+|nuORF	nc|ENSG00000146426|Q8IVF5-3|TIAM2	nc|ENSG00000146426|Q8IVF5-3|TIAM2	MULTI-SECPEP	OvCa9_classI_Rep2	2	485.270263671875	2	485.259248	968.503943	-1.1188	-0.00054292	0.59641	0.00028941	-0.52242	-0.00025351	485.2592591378458	53.26	1.9348	50.446	49.887	51.822	-2.8139					74	38	3	0	0	0	0.027062	1	3564	3564		110.12	7.3465	1	134400			53611	5293	44329	44365	58338	58338					0.018431151236086407
SLARHQKAHSG	11	Unmodified	_SLARHQKAHSG_					0	0	0		ZNF133|p.K333Afs*9|1|0.03|ENSG00000125846|chr20:18315847-18315850|CAAA/-|frameshift_variant;nc|ENSG00000125846|P52736-3|ZNF133;nc|ENSG00000125846|P52736-4|ZNF133;nc|ENSG00000125846|P52736-2|ZNF133;ENSG00000125846|ENST00000425686|ZNF133;nc|ENSG00000125846|P52736-5|ZNF133	ZNF133|p.K333Afs*9|1|0.03|ENSG00000125846|chr20:18315847-18315850|CAAA/-|frameshift_variant	ZNF133|p.K333Afs*9|1|0.03|ENSG00000125846|chr20:18315847-18315850|CAAA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	596.3202514648438	2	596.320703	1190.62685	2.7457	0.0016373	-2.6043	-0.001553	0.14143	8.4335E-05	596.3187740555462	59.544	1.1484	56.445	56.094	57.243	-3.0993					41	33	2	0	0	0	0.72479	1	1926	1926		18.262	1.5447	1	42551			53612	3746	44330	44366	58339	58339					0.03916371574905497
SLARILSLL	9	Unmodified	_SLARILSLL_					0	0	0		ENSG00000151176|ENST00000280800|PLBD2;nc|ENSG00000151176|Q8NHP8-2|PLBD2	ENSG00000151176|ENST00000280800|PLBD2	ENSG00000151176|ENST00000280800|PLBD2	MULTI-MSMS	OvCa9_classI_Rep3	3	493.32421875	2	493.32386	984.633166	-0.72862	-0.00035945	0.48404	0.00023879	-0.24458	-0.00012066	493.32396108529844	115.77	1.6299	114.73	114.45	116.08	-1.0414					67	32	3	0	0	0	0.1944	1	8615	8615		77.318	6.0219	1	204450			53613	5539	44331	44367	58340	58340					0.1402349675371397
SLARPAGAIL	10	Unmodified	_SLARPAGAIL_					0	0	0		ENST00000380737.7_1_8:26149008-26149152:+|nuORF	ENST00000380737.7_1_8:26149008-26149152:+|nuORF	ENST00000380737.7_1_8:26149008-26149152:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	484.7987976074219	2	484.798009	967.581465	0.22924	0.00011113	-0.80006	-0.00038787	-0.57082	-0.00027673	484.7977670768121	96.694	2.3628	95.735	94.933	97.296	-0.95857					93	47	4	0	0	0	0.49558	1	8754	8754		54.776	2.4771	1	1346100			53614	11149	44332	44368	58341	58341					0.09637753059814713
SLARPLLLL	9	Unmodified	_SLARPLLLL_					0	0	0			REV__ENST00000409117.7_1_2:179316324-179318191:+|nuORF	REV__ENST00000409117.7_1_2:179316324-179318191:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3334045410156	2	498.334227	994.653902	1.2643	0.00063007	-1.8659	-0.00092985	-0.60157	-0.00029978	498.3332884380841	124.71	3.4398	123.66	123.27	126.71	-1.0519					179	65	5	0	0	0	0.44568	1	9700	9700		47.657	1.6851	1	3929400	+		53615	25462	44333	44369	58342	58342					0.15636087133384535
SLARSPLVL	9	Unmodified	_SLARSPLVL_					0	0	0			REV__ENST00000472106.2_1_8:102504814-102555784:+|nuORF	REV__ENST00000472106.2_1_8:102504814-102555784:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	478.3013610839844	2	478.300384	954.586216	1.7244	0.0008248	0.40562	0.00019401	2.1301	0.0010188	478.30041212544586	106.95	0.8977	106.95	106.58	107.48	0					51	20	3	0	0	0	0.24951	1	12041	12041		68.787	4.5796	1	3302500	+		53616	26303	44334	44370	58343	58343					0.10710637202555517
SLAVGGVTPV	10	Unmodified	_SLAVGGVTPV_					0	0	0		nc|ENSG00000196188|P14091-2|CTSE;ENSG00000196188|ENST00000358184|CTSE;nc|ENSG00000196188|P14091-3|CTSE	nc|ENSG00000196188|P14091-2|CTSE	nc|ENSG00000196188|P14091-2|CTSE	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.2643737792969	2	450.263468	898.512382	-0.21751	-9.7935E-05	0.66897	0.00030121	0.45146	0.00020328	450.26357483138406	66.27	0.92668	62.78	62.516	63.442	-3.4902					35	18	2	0	0	0	0.41408	1	4816	4816		66.429	0	1	334380			53617	8576	44335	44371	58344	58344					0.059066690402460154
SLAVGGVTPV	10	Unmodified	_SLAVGGVTPV_					0	0	0		nc|ENSG00000196188|P14091-2|CTSE;ENSG00000196188|ENST00000358184|CTSE;nc|ENSG00000196188|P14091-3|CTSE	nc|ENSG00000196188|P14091-2|CTSE	nc|ENSG00000196188|P14091-2|CTSE	MULTI-MATCH	OvCa9_classI_Rep2	2		2	450.263468	898.512382	3.5401	0.001594	-3.634	-0.0016362	-0.09383	-4.2248E-05	450.26196397873156	65.72	1.6927	63.024	62.62	64.313	-2.6958	0.12214	-0.0020694	NaN	66.429	52	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57751			53618	8576	44335	44371							0.059066690402460154
SLAVLLHLI	9	Unmodified	_SLAVLLHLI_					0	0	0			REV__ENSG00000197702|ENST00000334956|PARVA	REV__ENSG00000197702|ENST00000334956|PARVA	MULTI-MSMS	OvCa99_classI_Rep5	1	489.8208312988281	2	489.820953	977.627353	0.55998	0.00027429	1.5548	0.00076157	2.1148	0.0010359	489.82156186147023	152	0.75154	152	151.74	152.49	0					27	15	2	0	0	0	0.22913	1	17804	17804		71.378	0	1	92720	+		53619	22943	44336	44372	58345	58345					0.13764398242051357
SLAVRIHNDIK	11	Unmodified	_SLAVRIHNDIK_					0	0	0			REV__tr|A0A553SN30|A0A553SN30_NIACIXanthinedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_23720PE=4SV=1	REV__tr|A0A553SN30|A0A553SN30_NIACIXanthinedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_23720PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3681030273438	2	633.369861	1264.72517	-4.5141	-0.0028591	3.4388	0.002178	-1.0753	-0.00068108	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.72479	1	15790	15790		18.262	3.3972	1	369460	+		53620	30390	44337	44373	58346	58346					0.1033955510006308
SLAVSRPL	8	Unmodified	_SLAVSRPL_					0	0	0		ENST00000442175.1_1_X:41958063-41958324:-|nuORF	ENST00000442175.1_1_X:41958063-41958324:-|nuORF	ENST00000442175.1_1_X:41958063-41958324:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	421.7609558105469	2	421.758352	841.502152	3.67	0.0015479	1.2867	0.00054266	4.9567	0.0020905	421.75896621388404	131.54	1.023	130.03	129.67	130.69	-1.5014					36	20	2	0	0	0	0.73626	1	12659	12659		33.516	0	1	16615			53621	11941	44338	44374	58347	58347					0.0750610610567719
SLAVSRPL	8	Unmodified	_SLAVSRPL_					0	0	0		ENST00000442175.1_1_X:41958063-41958324:-|nuORF	ENST00000442175.1_1_X:41958063-41958324:-|nuORF	ENST00000442175.1_1_X:41958063-41958324:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	421.758352	841.502152	1.1193	0.00047208	4.2595	0.0017965	5.3788	0.0022686	421.7601503189859	129.93	1.1358	129.7	129.22	130.35	-0.22696	-0.16533	0.0011788	NaN	33.516	32	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13693			53622	11941	44338	44374							0.0750610610567719
SLAYKHRA	8	Unmodified	_SLAYKHRA_					0	0	0			REV__chr1:205456223-205456892|275|13.1|0.04|8.48|+|1|LEMD1-DT,LEMD1-DT|1	REV__chr1:205456223-205456892|275|13.1|0.04|8.48|+|1|LEMD1-DT,LEMD1-DT|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.27752685546875	2	473.266876	944.519199	-0.88787	-0.0004202	1.6368	0.00077466	0.74897	0.00035446	473.26707789721434	69.856	0.33346	69.856	69.672	70.005	0					15	7	3	0	0	0	0.028476	1	6670	6670		33.516	5.6333	1	210830	+		53623	15813	44339	44375	58348	58348					0.044720267114598755
SLCASTYPDT	10	Unmodified	_SLCASTYPDT_					0	0	0		nc|ENSG00000080031|Q9HD43-3|PTPRH;nc|ENSG00000080031|Q9HD43-2|PTPRH;ENSG00000080031|ENST00000376350|PTPRH;ENST00000588559.5_1_19:55705613-55720813:-|nuORF	nc|ENSG00000080031|Q9HD43-3|PTPRH	nc|ENSG00000080031|Q9HD43-3|PTPRH	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.33154296875	2	529.228965	1056.44338	-0.76324	-0.00040393	0.81276	0.00043014	0.049518	2.6206E-05	529.2293280077905	57.482	0.96726	54.137	53.781	54.748	-3.3449					21	18	2	0	0	0	0.026802	1	3800	3800		42.396	9.5837	1	19411			53624	1627	44340	44376	58349	58349					-0.08258783041628703
SLCCILKSL	9	Unmodified	_SLCCILKSL_					0	0	0		Harlequin-int_dup161|chr4:91353598-91357139:-|1.3911466287095282|0.2716421829311496|2.36|422.0|41|2|sense	Harlequin-int_dup161|chr4:91353598-91357139:-|1.3911466287095282|0.2716421829311496|2.36|422.0|41|2|sense	Harlequin-int_dup161|chr4:91353598-91357139:-|1.3911466287095282|0.2716421829311496|2.36|422.0|41|2|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	490.26556396484375	2	490.269381	978.524209	-0.55627	-0.00027272	-4.0808	-0.0020007	-4.6371	-0.0022734	490.26633483067343	55.824	0.9821	55.824	55.599	56.581	0					55	23	5	0	0	0	0.11471	1	4579	4579		93.195	5.499	1	4003000			53625	14367	44341	44377	58350	58350					0.034088264675574464
SLCHPGWSALV	11	Unmodified	_SLCHPGWSALV_					0	0	0		nc|ENSG00000153094|O43521-12|BCL2L11	nc|ENSG00000153094|O43521-12|BCL2L11	nc|ENSG00000153094|O43521-12|BCL2L11	MULTI-SECPEP	OvCa9_classI_Rep3	3	584.3047485351562	2	585.292233	1168.56991	-2.1052	-0.0012322	3.4557	0.0020226	1.3505	0.00079043	585.294103857676	87.619	1.232	85.442	84.834	86.066	-2.1768					44	23	3	0	0	0	0.025496	1	5212	5212		19.104	0	1	92316			53626	15104	44342	44378	58351	58351					-0.007628120258459603
SLCNSCSGYHE	11	Carbamidomethyl (C)	_SLCNSC(Carbamidomethyl (C))SGYHE_	SLC(0.161)NSC(0.839)SGYHE		SLC(-7.2)NSC(7.2)SGYHE		0	1	0			REV__ENST00000527432.5_1_14:73525300-73544147:+|nuORF	REV__ENST00000527432.5_1_14:73525300-73544147:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	419.4942626953125	3	419.493867	1255.45977	-0.13157	-5.5191E-05	0.072472	3.0401E-05	-0.059094	-2.479E-05	419.49397135251195	38.326	1.2628	38.326	38.024	39.287	0					66	27	6	0	0	0	0.62561	1	2170	2170		42.338	7.1861	2	1885600	+		53627	27153	44343	44379	58352	58352	337				-0.15774025147175053
SLCPRPRAL	9	Unmodified	_SLCPRPRAL_					0	0	0			REV__ENST00000540230.5_1_12:109928780-109928933:+|nuORF	REV__ENST00000540230.5_1_12:109928780-109928933:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.8120422363281	2	506.789661	1011.56477	-0.95352	-0.00048323	1.108	0.00056154	0.1545	7.8301E-05	506.79107311300794	89.227	0.44412	87.096	86.944	87.388	-2.1309					11	8	2	0	0	0	0.027392	1	5465	5465		63.306	0	1	76754	+		53628	20218	44344	44380	58353	58353					0.05944928902192714
SLDAKSSNFL	10	Unmodified	_SLDAKSSNFL_					0	0	0			REV__nc|ENSG00000021355|P30740-2|SERPINB1	REV__nc|ENSG00000021355|P30740-2|SERPINB1	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.663818359375	2	541.279846	1080.54514	-0.74596	-0.00040377	-0.098257	-5.3184E-05	-0.84421	-0.00045696	541.2802600859167	93.384	1.5127	91.422	90.932	92.445	-1.9617					54	28	4	0	0	0	0.026577	1	6032	6032		77.318	13.784	1	135600	+		53629	16544	44345	44381	58354	58354					0.008088313724329055
SLDALITHV	9	Unmodified	_SLDALITHV_					0	0	0		ENSG00000187758|ENST00000209668|ADH1A;nc|ENSG00000196616|P00325-2|ADH1B;ENSG00000196616|ENST00000305046|ADH1B	ENSG00000187758|ENST00000209668|ADH1A;nc|ENSG00000196616|P00325-2|ADH1B	nc|ENSG00000196616|P00325-2|ADH1B	MULTI-MSMS	OvCa99_classI_Rep5	1	484.7756042480469	2	484.7742	967.533846	1.7302	0.00083876	0.60161	0.00029165	2.3318	0.0011304	484.7743547831953	107.2	0.79823	107.2	106.93	107.73	0					38	18	3	0	0	0	0.35444	1	12079	12079		56.721	6.6965	1	1627600			53630	8430;8635	44346	44382	58355	58355					0.04878054068956317
SLDALITHV	9	Unmodified	_SLDALITHV_					0	0	0		ENSG00000187758|ENST00000209668|ADH1A;nc|ENSG00000196616|P00325-2|ADH1B;ENSG00000196616|ENST00000305046|ADH1B	ENSG00000187758|ENST00000209668|ADH1A;nc|ENSG00000196616|P00325-2|ADH1B	nc|ENSG00000196616|P00325-2|ADH1B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.30908203125	2	484.7742	967.533846	-0.28146	-0.00013644	0.29664	0.0001438	0.015181	7.3592E-06	484.77408148852504	109.24	1.6101	107.51	107.23	108.84	-1.7256					58	30	3	0	0	0	0.027462	1	10019	10019		51.335	20.832	1	83614			53631	8430;8635	44346	44382	58356	58356					0.04878054068956317
SLDEISQPAQE	11	Unmodified	_SLDEISQPAQE_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;COL6A3|p.T1393Cfs*9|1|0.09|ENSG00000163359|chr2:237371828-237371840|GCTCCCGGAAGGT/-|frameshift_variant;COL6A3|p.K1001Nfs*34|1|0.23|ENSG00000163359|chr2:237376800-237376839|TTTTAAGAGATTCACTATCTGTGGATGAAGATCTCCAATC/-|frameshift_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa9_classI_Rep3	3	608.7894897460938	2	608.788232	1215.56191	0.77672	0.00047286	2.7168	0.001654	3.4935	0.0021268	608.7896927819082	135.16	1.3782	134.05	133.72	135.1	-1.1076					76	27	4	0	0	0	0.68391	1	10962	10962		35.178	2.3658	1	189180			53632	6293	44347	44383	58357	58357					-0.03724712532266494
SLDENGLPL	9	Unmodified	_SLDENGLPL_					0	0	0		ENSG00000188649|ENST00000646931|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	ENSG00000188649|ENST00000646931|CC2D2B	MULTI-SECPEP	OvCa9_classI_Rep3	3	479.2807922363281	2	479.248015	956.481476	-0.47371	-0.00022702	0.1689	8.0947E-05	-0.30481	-0.00014608	479.24930078189226	96.322	0.35076	94.493	94.271	94.621	-1.8286					10	6	2	0	0	0	0.027176	1	6308	6308		99.375	11.679	1	11557			53633	8489	44348	44384	58358	58358					0.0014947093535511158
SLDGKDWLTP	10	Unmodified	_SLDGKDWLTP_					0	0	0		tr|A0A7D6ZR35|A0A7D6ZR35_9CLOTIsochorismatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02875PE=3SV=1	tr|A0A7D6ZR35|A0A7D6ZR35_9CLOTIsochorismatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02875PE=3SV=1	tr|A0A7D6ZR35|A0A7D6ZR35_9CLOTIsochorismatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02875PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.8136596679688	2	566.287671	1130.56079	-0.051805	-2.9336E-05	-2.537	-0.0014367	-2.5888	-0.001466	566.2862192153385	49.009	0.3561	49.009	48.675	49.031	0					11	7	2	0	0	0	0.026646	1	3632	3632		53.089	21.455	1	530880			53634	35711	44349	44385	58359	58359					0.0007311788947390596
SLDGRKAKN	9	Unmodified	_SLDGRKAKN_					0	0	0			REV__tr|A0A7D6VP23|A0A7D6VP23_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14975PE=4SV=1	REV__tr|A0A7D6VP23|A0A7D6VP23_9CLOT2-hydroxyacyl-CoAdehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_14975PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.7829284667969	2	494.780348	987.546142	-0.19248	-9.5234E-05	3.7758	0.0018682	3.5833	0.001773	494.78217265714096	62.558	1.6035	59.101	58.57	60.174	-3.4577					69	32	4	0	0	0	0.53483	1	4363	4363		39.253	5.0803	1	509620	+		53635	31224	44350	44386	58360	58360					0.051870905319901794
SLDKTSHSV	9	Unmodified	_SLDKTSHSV_					0	0	0		GTF3C1|p.H1425Rfs*3|1|0.29|ENSG00000077235|chr16:27476515-27476530|TGAAGCACCAGAAAGT/-|frameshift_variant;nc|ENSG00000077235|Q12789-3|GTF3C1;ENSG00000077235|ENST00000356183|GTF3C1;ENST00000570129.1_1_16:27494722-27497377:-|nuORF	GTF3C1|p.H1425Rfs*3|1|0.29|ENSG00000077235|chr16:27476515-27476530|TGAAGCACCAGAAAGT/-|frameshift_variant	GTF3C1|p.H1425Rfs*3|1|0.29|ENSG00000077235|chr16:27476515-27476530|TGAAGCACCAGAAAGT/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	487.2516784667969	2	487.251089	972.487624	-0.029685	-1.4464E-05	-0.22327	-0.00010879	-0.25295	-0.00012325	487.25085090054705	31.782	0.79479	31.782	31.608	32.403	0					34	15	4	0	0	0	0.070405	1	1332	1332		107.01	16.231	1	663310			53636	1567	44351	44387	58361	58361					0.0002798916685833319
SLDLIPFDGDL	11	Unmodified	_SLDLIPFDGDL_					0	0	0		ENST00000544349.5_1_12:122735394-122750988:-|nuORF;ENSG00000139719|ENST00000267199|VPS33A	ENST00000544349.5_1_12:122735394-122750988:-|nuORF	ENST00000544349.5_1_12:122735394-122750988:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	603.2884521484375	2	602.808436	1203.60232	2.1101	0.001272	-0.0021219	-1.2791E-06	2.108	0.0012707	602.8088068608608	96.963	0.68291	96.963	96.584	97.267	0					19	15	2	0	0	0	0.02538	1	10645	10645		45.972	3.5761	1	527310			53637	4798	44352	44388	58362	58362					0.008662538581575063
SLDLLNCHN	9	Unmodified	_SLDLLNCHN_					0	0	0			REV__tr|A0A553SSE3|A0A553SSE3_NIACIAllophanatehydrolaseOS=NialliacirculansOX=1397GN=atzFPE=4SV=1	REV__tr|A0A553SSE3|A0A553SSE3_NIACIAllophanatehydrolaseOS=NialliacirculansOX=1397GN=atzFPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.7908325195312	2	514.745116	1027.47568	-1.8393	-0.00094678	1.1546	0.00059433	-0.68471	-0.00035245	514.7455054227984	87.612	1.2087	84.985	84.599	85.808	-2.6269					39	23	3	0	0	0	0.027448	1	7539	7539		44.117	0	1	60902	+		53638	30829	44353	44389	58363	58363					-0.036959508479640135
SLDLSELYR	9	Unmodified	_SLDLSELYR_					0	0	0			REV__ENSG00000182704|ENST00000333090|TSKU	REV__ENSG00000182704|ENST00000333090|TSKU	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.7461547851562	2	548.287671	1094.56079	-1.4821	-0.00081261	-0.031789	-1.743E-05	-1.5139	-0.00083004	548.2874982364674	106.78	0.68473	104.9	104.8	105.49	-1.8785					19	12	2	0	0	0	0.027418	1	9741	9741		79.451	40.697	1	25214	+		53639	22313	44354	44390	58364	58364					0.017291178894765835
SLDLSELYR	9	Unmodified	_SLDLSELYR_					0	0	0			REV__ENSG00000182704|ENST00000333090|TSKU	REV__ENSG00000182704|ENST00000333090|TSKU	MULTI-MATCH	OvCa9_classI_Rep2	2		2	548.287671	1094.56079	-0.1545	-8.4709E-05	-0.58429	-0.00032036	-0.73878	-0.00040507	548.2873867275972	105.49	0.54821	105.06	104.85	105.4	-0.43642	0.078487	-0.00014945	NaN	79.451	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21839	+		53640	22313	44354	44390							0.017291178894765835
SLDLSKVAETL	11	Unmodified	_SLDLSKVAETL_					0	0	0			REV__ENSG00000137462|ENST00000642700|TLR2	REV__ENSG00000137462|ENST00000642700|TLR2	MULTI-MSMS	OvCa99_classI_Rep5	1	588.33056640625	2	588.329536	1174.64452	-0.55959	-0.00032922	4.2626	0.0025078	3.703	0.0021786	588.3320698629465	24.627	0.30244	24.627	24.486	24.788	0					10	5	2	0	0	0	0.71498	1	470	470		24.519	0.99649	1	47626	+		53641	19453	44355	44391	58365	58365					0.06418229266523667
SLDLVELSL	9	Unmodified	_SLDLVELSL_					0	0	0			REV__nc|ENSG00000144749|Q96JA1-2|LRIG1	REV__nc|ENSG00000144749|Q96JA1-2|LRIG1	MULTI-MSMS	OvCa9_classI_Rep2	2	494.782470703125	2	494.78169	987.548827	-1.0978	-0.00054319	2.1996	0.0010883	1.1018	0.00054514	494.7826271232193	61.627	1.8441	58.867	58.04	59.884	-2.7593					92	35	4	0	0	0	0.44568	1	4602	4602		47.657	3.5405	1	363280	+		53642	19933	44356	44392	58366	58366					0.054555011462980474
SLDQPPATSP	10	Unmodified	_SLDQPPATSP_					0	0	0		ENSG00000149115|ENST00000358252|TNKS1BP1;TNKS1BP1|p.R389Q|1|0.3|ENSG00000149115|chr11:57313522-57313522|C/T|missense_variant;ENST00000528882.5_1_11:57067274-57087552:-|nuORF	ENSG00000149115|ENST00000358252|TNKS1BP1	ENSG00000149115|ENST00000358252|TNKS1BP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.8096618652344	2	506.750921	1011.48729	1.3807	0.00069968	-1.0697	-0.00054209	0.31098	0.00015759	506.75030894553254	88.151	1.3771	86.784	86.446	87.823	-1.3676					61	27	3	0	0	0	0.026522	1	7797	7797		56.434	13.959	1	163310			53643	5442	44357	44393	58367	58367					-0.017994305530010024
SLDQPTQTV	9	Unmodified	_SLDQPTQTV_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	OvCa99_classI_Rep5	1	494.7519836425781	2	494.750921	987.48729	-1.3047	-0.00064552	0.85678	0.00042389	-0.44795	-0.00022163	494.7512581288725	70.1	1.05	70.1	69.591	70.641	0					45	25	3	0	0	0	0.018335	1	6695	6695		148.99	39.508	1	6776400			53644	8130	44358	44394	58368	58368					-0.0069543055299163825
SLDSLSRRR	9	Unmodified	_SLDSLSRRR_					0	0	0		ENSG00000267909|ENST00000599174|CCDC177	ENSG00000267909|ENST00000599174|CCDC177	ENSG00000267909|ENST00000599174|CCDC177	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.7974243164062	2	545.309803	1088.60505	-2.8502	-0.0015543	-3.5261	-0.0019228	-6.3763	-0.0034771	545.3079391274013	88.177	1.7085	85.575	84.823	86.532	-2.6027					61	33	4	0	0	0	0.027447	1	7621	7621		39.253	24.388	1	98299			53645	9535	44359	44395	58369	58369					0.06429566826318478
SLDSLSRRR	9	Unmodified	_SLDSLSRRR_					0	0	0		ENSG00000267909|ENST00000599174|CCDC177	ENSG00000267909|ENST00000599174|CCDC177	ENSG00000267909|ENST00000599174|CCDC177	MULTI-MATCH	OvCa9_classI_Rep3	3		2	545.309803	1088.60505	-0.84574	-0.00046119	-5.5714	-0.0030382	-6.4172	-0.0034994	545.3066078909843	87.814	0.87424	85.637	85.345	86.219	-2.1768	0.073046	0.00017475	NaN	39.253	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90878			53646	9535	44359	44395							0.06429566826318478
SLDSTLYTGE	10	Unmodified	_SLDSTLYTGE_					0	0	0			REV__nc|ENSG00000138617|Q8N5Y8-3|PARP16	REV__nc|ENSG00000138617|Q8N5Y8-3|PARP16	MULTI-SECPEP	OvCa9_classI_Rep3	3	543.2955932617188	2	543.253494	1084.49243	-0.051442	-2.7946E-05	0.43458	0.00023608	0.38313	0.00020814	543.7551372847757	118.36	0.79288	117.33	116.98	117.78	-1.0324					28	15	3	0	0	0	0.027028	1	8965	8965		24.519	0	1	32745	+		53647	19549	44360	44396	58370	58370					-0.046431714810069025
SLDVYRKLI	9	Unmodified	_SLDVYRKLI_					0	0	0		ENST00000556502.1_1_14:60619584-60632027:-|nuORF;nc|ENSG00000100612|Q9Y394-2|DHRS7;ENSG00000100612|ENST00000557185|DHRS7;ENST00000553986.1_1_14:60616802-60619887:-|nuORF	ENST00000556502.1_1_14:60619584-60632027:-|nuORF	ENST00000556502.1_1_14:60619584-60632027:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8296508789062	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.65476	1	14104	14104		25.45	1.2474	1	245610			53648	2091	44361	44397	58371	58371					0.10094577919812764
SLDWALILP	9	Unmodified	_SLDWALILP_					0	0	0		ENSG00000133116|ENST00000380099|KL	ENSG00000133116|ENST00000380099|KL	ENSG00000133116|ENST00000380099|KL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.7728881835938	2	514.294768	1026.57498	-0.90818	-0.00046707	-0.82045	-0.00042195	-1.7286	-0.00088903	514.2938651254955	70.489	1.1628	67.008	66.787	67.95	-3.4812					35	23	2	0	0	0	0.027449	1	5318	5318		40.573	0	1	76765			53649	4205	44362	44398	58372	58372					0.0627581510843811
SLEAIGDLPL	10	Unmodified	_SLEAIGDLPL_					0	0	0			REV__tr|A0A553SIY0|A0A553SIY0_NIACICd(2+)-exportingATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	REV__tr|A0A553SIY0|A0A553SIY0_NIACICd(2+)-exportingATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	514.2905883789062	2	514.28714	1026.55973	-0.068276	-3.5113E-05	3.5407	0.0018209	3.4724	0.0017858	514.2890122350611	101.71	0.89513	101.71	101.4	102.29	0					46	20	3	0	0	0	0.37918	1	11304	11304		71.296	2.5089	1	1628000	+		53650	29945	44363	44399	58373	58373					0.04750903520562133
SLEDKKWPN	9	Unmodified	_SLEDKKWPN_					0	0	0		ENSG00000137962|ENST00000260526|ARHGAP29;ARHGAP29|p.M792V|1|0.36|ENSG00000137962|chr1:94179831-94179831|T/C|missense_variant;ENST00000482481.1_1_1:94643162-94655618:-|nuORF	ENSG00000137962|ENST00000260526|ARHGAP29	ENSG00000137962|ENST00000260526|ARHGAP29	MULTI-SECPEP	OvCa9_classI_Rep3	3	559.2706298828125	2	558.787838	1115.56112	-0.8182	-0.0004572	3.4392	0.0019218	2.621	0.0014646	558.7898213086488	78.33	0.60457	75.978	75.698	76.303	-2.3527					16	11	2	0	0	0	0.027462	1	4191	4191		21.96	1.013	1	26386			53651	4640	44364	44400	58374	58374					0.007965376093352461
SLEDLPALGI	10	Unmodified	_SLEDLPALGI_					0	0	0		nc|ENSG00000106123|O15197-2|EPHB6;nc|ENSG00000106123|O15197|EPHB6;ENSG00000106123|ENST00000652003|EPHB6	nc|ENSG00000106123|O15197-2|EPHB6	nc|ENSG00000106123|O15197-2|EPHB6	MULTI-MSMS	OvCa9_classI_Rep3	3	514.2867431640625	2	514.28714	1026.55973	0.90027	0.000463	-1.014	-0.00052149	-0.11374	-5.8496E-05	514.2865443000921	129.76	0.8905	128.65	128.39	129.28	-1.1121					36	17	3	0	0	0	0.55145	1	10280	10280		47.916	0	1	70207			53652	2530	44365	44401	58375	58375					0.04750903520562133
SLEEAGAPPV	10	Unmodified	_SLEEAGAPPV_					0	0	0			REV__ZDBF2|p.G2318Rfs*12|1|0.09|ENSG00000204186|chr2:206311479-206311480|-/AGAGCTGTGGATATAAT|frameshift_variant	REV__ZDBF2|p.G2318Rfs*12|1|0.09|ENSG00000204186|chr2:206311479-206311480|-/AGAGCTGTGGATATAAT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.3074645996094	2	485.248015	968.481476	4.0703	0.0019751	-0.66704	-0.00032368	3.4032	0.0016514	485.2475492313693	131.65	0.39987	130.15	129.98	130.38	-1.5015					11	7	2	0	0	0	0.026982	1	12652	12652		16.473	0	1	8854.1	+		53653	23131	44366	44402	58376	58376					-0.004025290646609392
SLEEEIKEI	9	Unmodified	_SLEEEIKEI_					0	0	0		ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	ENSG00000158669|ENST00000396987|GPAT4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.80908203125	2	545.287337	1088.56012	-0.66139	-0.00036065	0.52228	0.00028479	-0.13911	-7.5854E-05	545.287678022097	79.313	0.75947	76.561	76.274	77.034	-2.7514					27	15	3	0	0	0	0.027072	1	6403	6403		79.713	13.283	1	59246			53654	5968	44367	44403	58377	58377					0.019382784497793182
SLEENPVLI	9	Unmodified	_SLEENPVLI_					0	0	0			REV__ENSG00000153207|ENST00000648844|AHCTF1	REV__ENSG00000153207|ENST00000648844|AHCTF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.7586975097656	2	507.279315	1012.54408	-0.040638	-2.0615E-05	0.012907	6.5476E-06	-0.02773	-1.4067E-05	507.281015918396	115.61	0.69237	114.21	113.92	114.61	-1.3977					20	13	2	0	0	0	0.027411	1	10799	10799		74.255	33.477	1	21312	+		53655	20327	44368	44404	58378	58378					0.03830617003529824
SLEFRGQLD	9	Unmodified	_SLEFRGQLD_					0	0	0			REV__ENSG00000255423|ENST00000533473|EBLN2	REV__ENSG00000255423|ENST00000533473|EBLN2	MULTI-SECPEP	OvCa9_classI_Rep2	2	531.8427124023438	2	532.772188	1063.52982	-1.49	-0.00079381	1.3351	0.00071132	-0.15483	-8.2486E-05	532.7726599368785	86.111	1.3377	84.62	84.196	85.534	-1.4906					55	25	3	0	0	0	0.027461	1	7506	7506		25.574	0	1	83059	+		53656	23529	44369	44405	58379	58379					0.0005996457523451681
SLEGFTKNL	9	Unmodified	_SLEGFTKNL_					0	0	0			REV__tr|A0A7D6VZE2|A0A7D6VZE2_9CLOTdITP/XTPpyrophosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_19955PE=3SV=1	REV__tr|A0A7D6VZE2|A0A7D6VZE2_9CLOTdITP/XTPpyrophosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_19955PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.2935791015625	2	504.771657	1007.52876	1.5445	0.00077963	0.64323	0.00032468	2.1877	0.0011043	504.7722514268443	110.03	0.45148	110.03	109.81	110.27	0					14	9	2	0	0	0	0.027462	1	12472	12472		8.6937	0	1	143650	+		53657	31836	44370	44406	58380	58380					0.025297502063381216
SLEHGWKLLL	10	Unmodified	_SLEHGWKLLL_					0	0	0		tr|A0A553SUL2|A0A553SUL2_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00770PE=3SV=1	tr|A0A553SUL2|A0A553SUL2_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00770PE=3SV=1	tr|A0A553SUL2|A0A553SUL2_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00770PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	598.3427124023438	2	598.345323	1194.67609	-1.8759	-0.0011224	-1.4724	-0.00088098	-3.3483	-0.0020034	598.3441112823094	84.726	1.8991	83.18	82.588	84.487	-1.5462					99	37	4	0	0	0	0.62299	1	7291	7291		39.253	2.0937	1	427910			53658	34620	44371	44407	58381	58381					0.08654266811140587
SLEHIQPSLP	10	Unmodified	_SLEHIQPSLP_					0	0	0			REV__ENST00000521682.5_1_8:144356964-144357361:+|nuORF	REV__ENST00000521682.5_1_8:144356964-144357361:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	560.8046264648438	2	560.803488	1119.59242	1.8207	0.0010211	3.9424	0.0022109	5.7631	0.0032319	560.8055147932859	144.6	1.5674	144.6	144.06	145.63	0					54	32	3	0	0	0	0.50999	1	16912	16912		52.937	5.2794	1	173830	+		53659	27072	44372	44408	58382	58382					0.03741110643431966
SLEHKLEAL	9	Unmodified	_SLEHKLEAL_					0	0	0			REV__ENSG00000070444|ENST00000174618|MNT	REV__ENSG00000070444|ENST00000174618|MNT	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.2931518554688	2	520.292756	1038.57096	0.4127	0.00021472	-0.98731	-0.00051369	-0.57461	-0.00029896	520.2918928507578	110.73	0.84132	109.13	108.81	109.65	-1.6011					29	15	3	0	0	0	0.027462	1	10221	10221		29.15	2.4566	1	37643	+		53660	16879	44373	44409	58383	58383					0.053217256147036096
SLELARKKA	9	Unmodified	_SLELARKKA_					0	0	0			REV__ENSG00000113361|ENST00000265071|CDH6	REV__ENSG00000113361|ENST00000265071|CDH6	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.7660827636719	2	508.316566	1014.61858	-2.2651	-0.0011514	1.6083	0.0008175	-0.65686	-0.00033389	508.3173303349865	37.613	0.44152	34.903	34.731	35.173	-2.7097					13	8	2	0	0	0	0.027462	1	1699	1699		35.618	0	1	19125	+		53661	18147	44374	44410	58384	58384					0.11185424605560002
SLELFHVKL	9	Unmodified	_SLELFHVKL_					0	0	0		L1MB3_dup16926|chr22:15811040-15811839:+|1.0764931184738016|0.3095763404933719|1.8|423.0|53|3|anti-sense	L1MB3_dup16926|chr22:15811040-15811839:+|1.0764931184738016|0.3095763404933719|1.8|423.0|53|3|anti-sense	L1MB3_dup16926|chr22:15811040-15811839:+|1.0764931184738016|0.3095763404933719|1.8|423.0|53|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	543.3173828125	2	543.321317	1084.62808	-0.12829	-6.9702E-05	-3.3425	-0.001816	-3.4708	-0.0018857	543.3192267221104	105.09	0.65813	105.09	104.74	105.4	0					34	14	3	0	0	0	0.041116	1	11794	11794		125.81	12.402	1	1923700			53662	14599	44375	44411	58385	58385					0.08915192891095103
SLELGPRDLI	10	Unmodified	_SLELGPRDLI_					0	0	0		nc|ENSG00000063660|P35052-2|GPC1;ENST00000469694.5_1_2:241381745-241403123:+|nuORF	nc|ENSG00000063660|P35052-2|GPC1	nc|ENSG00000063660|P35052-2|GPC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	556.8187255859375	2	556.819138	1111.62372	0.092068	5.1265E-05	0.32639	0.00018174	0.41846	0.000233	556.8192078833141	121.24	0.60977	119.9	119.64	120.25	-1.3479					20	11	2	0	0	0	0.3094	1	11423	11423		79.713	7.8351	1	64136			53663	12348	44376	44412	58386	58386					0.07237683677522
SLELGPRDLI	10	Unmodified	_SLELGPRDLI_					0	0	0		nc|ENSG00000063660|P35052-2|GPC1;ENST00000469694.5_1_2:241381745-241403123:+|nuORF	nc|ENSG00000063660|P35052-2|GPC1	nc|ENSG00000063660|P35052-2|GPC1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	556.819138	1111.62372	-0.72861	-0.0004057	2.0695	0.0011523	1.3409	0.00074662	556.8201301755445	120.08	0.69115	119.91	119.69	120.38	-0.17138	0.020944	0.0012492	NaN	79.713	22	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29944			53664	12348	44376	44412							0.07237683677522
SLELGPRDLI	10	Unmodified	_SLELGPRDLI_					0	0	0		nc|ENSG00000063660|P35052-2|GPC1;ENST00000469694.5_1_2:241381745-241403123:+|nuORF	nc|ENSG00000063660|P35052-2|GPC1	nc|ENSG00000063660|P35052-2|GPC1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	556.819138	1111.62372	0.82092	0.0004571	0.087718	4.8843E-05	0.90864	0.00050595	556.8188437620641	120.89	0.66372	119.86	119.56	120.22	-1.0271	-0.029701	-0.00095778	NaN	79.713	30	12	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53926			53665	12348	44376	44412							0.07237683677522
SLELPAAKK	9	Unmodified	_SLELPAAKK_					0	0	0		nc|ENSG00000110172|Q9UHD1-2|CHORDC1;ENSG00000110172|ENST00000320585|CHORDC1	nc|ENSG00000110172|Q9UHD1-2|CHORDC1	nc|ENSG00000110172|Q9UHD1-2|CHORDC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.32110595703125	2	478.792392	955.570232	-0.52096	-0.00024943	-3.4353	-0.0016448	-3.9562	-0.0018942	478.79060609136184	101.17	1.0648	98.906	98.7	99.765	-2.2665					25	21	2	0	0	0	0.027462	1	9165	9165		38.806	8.3025	1	142620			53666	2761	44377	44413	58387	58387					0.09066930965650499
SLELRGPQP	9	Unmodified	_SLELRGPQP_					0	0	0			REV__ENST00000328405.6_1_3:19189957-19190221:+|nuORF	REV__ENST00000328405.6_1_3:19189957-19190221:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	499.30548095703125	2	498.777274	995.539994	-0.083006	-4.1401E-05	-2.3863	-0.0011902	-2.4693	-0.0012317	498.7756984132096	109.47	0.9899	109.3	108.67	109.66	-0.17237					29	19	2	0	0	0	0.027455	1	10258	10258		51.335	15.717	1	9610.7	+		53667	24509	44378	44414	58388	58388					0.04204572300477594
SLELRRWRLQ	10	Unmodified	_SLELRRWRLQ_					0	0	0		chr2:200388555-200389223|92|15.58|0.39|5.31|+|1|TE_info:AluJo,AluJo_dup11263,Alu,SINE,donor,+,200388290,200388555|None,SPATS2L|5	chr2:200388555-200389223|92|15.58|0.39|5.31|+|1|TE_info:AluJo,AluJo_dup11263,Alu,SINE,donor,+,200388290,200388555|None,SPATS2L|5	chr2:200388555-200389223|92|15.58|0.39|5.31|+|1|TE_info:AluJo,AluJo_dup11263,Alu,SINE,donor,+,200388290,200388555|None,SPATS2L|5	MULTI-SECPEP	OvCa9_classI_Rep2	2	452.2485046386719	3	452.933477	1355.7786	0.73066	0.00033094	-3.96	-0.0017936	-3.2294	-0.0014627	452.9317077050729	52.901	0.49195	50.088	49.739	50.231	-2.8139					12	9	2	0	0	0	0.027165	1	3520	3520		6.3209	0	1	13102			53668	437	44379	44415	58389	58389					0.1149435260260816
SLENALVTI	9	Unmodified	_SLENALVTI_					0	0	0		tr|A0A553SPA0|A0A553SPA0_NIACIUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=NialliacirculansOX=1397GN=murEPE=3SV=1	tr|A0A553SPA0|A0A553SPA0_NIACIUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=NialliacirculansOX=1397GN=murEPE=3SV=1	tr|A0A553SPA0|A0A553SPA0_NIACIUDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelateligaseOS=NialliacirculansOX=1397GN=murEPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.7887268066406	2	480.274032	958.533512	-0.2968	-0.00014255	-0.37613	-0.00018065	-0.67294	-0.00032319	480.27388305227527	79.529	0.61604	76.777	76.322	76.938	-2.7514					30	12	3	0	0	0	0.027462	1	6407	6407		30.504	0	1	481000			53669	34020	44380	44416	58390	58390					0.052586343491157095
SLENHLELYDI	11	Unmodified	_SLENHLELYDI_					0	0	0		tr|A0A7D6VTT6|A0A7D6VTT6_9CLOTExopolyphosphataseOS=ClostridiumintestinaleOX=36845GN=ppxPE=3SV=1	tr|A0A7D6VTT6|A0A7D6VTT6_9CLOTExopolyphosphataseOS=ClostridiumintestinaleOX=36845GN=ppxPE=3SV=1	tr|A0A7D6VTT6|A0A7D6VTT6_9CLOTExopolyphosphataseOS=ClostridiumintestinaleOX=36845GN=ppxPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	448.800048828125	3	449.225992	1344.65615	-0.88646	-0.00039822	1.6886	0.00075858	0.80218	0.00036036	449.2265900825506	119.72	0.7359	118.38	118.14	118.88	-1.3444					20	13	2	0	0	0	0.025995	1	11234	11234		29.551	5.0316	1	23005			53670	35142	44381	44417	58391	58391					-0.0023957371013239026
SLENHLELYDI	11	Unmodified	_SLENHLELYDI_					0	0	0		tr|A0A7D6VTT6|A0A7D6VTT6_9CLOTExopolyphosphataseOS=ClostridiumintestinaleOX=36845GN=ppxPE=3SV=1	tr|A0A7D6VTT6|A0A7D6VTT6_9CLOTExopolyphosphataseOS=ClostridiumintestinaleOX=36845GN=ppxPE=3SV=1	tr|A0A7D6VTT6|A0A7D6VTT6_9CLOTExopolyphosphataseOS=ClostridiumintestinaleOX=36845GN=ppxPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	449.225992	1344.65615	1.112	0.00049955	-0.82188	-0.00036921	0.29014	0.00013034	449.55995156547914	118.73	0.64706	118.58	118.33	118.98	-0.14755	0.081603	-0.0012419	NaN	29.551	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12193			53671	35142	44381	44417							-0.0023957371013239026
SLENRIQI	8	Unmodified	_SLENRIQI_					0	0	0		HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|109|3|sense	HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|109|3|sense	HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|109|3|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	486.7808532714844	2	486.777274	971.539994	0.077278	3.7617E-05	-0.80199	-0.00039039	-0.72471	-0.00035277	486.776834688707	57.463	1.0565	57.463	57.138	58.194	0					57	24	6	0	0	0	0.50747	1	4841	4841		76.774	3.8949	1	8414700			53672	14459	44382	44418	58392	58392					0.053085723004642205
SLEPYKSC	8	Unmodified	_SLEPYKSC_					0	0	0			REV__tr|A0A7D6W1N2|A0A7D6W1N2_9CLOTProlyloligopeptidasefamilyserinepeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03840PE=4SV=1	REV__tr|A0A7D6W1N2|A0A7D6W1N2_9CLOTProlyloligopeptidasefamilyserinepeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03840PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.7133483886719	2	463.718036	925.421518	-6.4286	-0.002981	-3.4868	-0.0016169	-9.9154	-0.0045979	463.71628519476496	159.33	0.70088	157.74	157.47	158.17	-1.5858					37	15	4	0	0	0	0.745	1	15723	15723		29.15	2.3535	1	51969	+		53673	31887	44383	44419	58393	58393					-0.04417542999544821
SLERAKKETH	10	Unmodified	_SLERAKKETH_					0	0	0		CRYBG3|p.I2969Ffs*49|1|0.05|ENSG00000080200|chr3:97943305-97943306|-/TTTTTAAGTAAACACAAAGGTTATC|frameshift_variant	CRYBG3|p.I2969Ffs*49|1|0.05|ENSG00000080200|chr3:97943305-97943306|-/TTTTTAAGTAAACACAAAGGTTATC|frameshift_variant	CRYBG3|p.I2969Ffs*49|1|0.05|ENSG00000080200|chr3:97943305-97943306|-/TTTTTAAGTAAACACAAAGGTTATC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.8827819824219	3	400.222805	1197.64658	1.3873	0.00055524	3.5461	0.0014192	4.9334	0.0019745	400.2240650953882	46.983	0.48837	46.983	46.762	47.251	0					20	10	3	0	0	0	0.026942	1	3353	3353		26.063	16.417	1	74343			53674	682	44384	44420	58394	58394					0.055667027949766634
SLERDHIL	8	Unmodified	_SLERDHIL_					0	0	0			REV__nc|ENSG00000102763|A3KMH1-2|VWA8	REV__nc|ENSG00000102763|A3KMH1-2|VWA8	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.2456359863281	2	491.769448	981.524344	-0.14931	-7.3429E-05	1.1801	0.00058033	1.0308	0.0005069	491.769351975519	58.475	0.90884	58.475	57.984	58.892	0					42	21	3	0	0	0	0.028476	1	4957	4957		25.45	0	1	904950	+		53675	17570	44385	44421	58395	58395					0.03284285783422547
SLERKPSN	8	Unmodified	_SLERKPSN_					0	0	0		nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A;ENSG00000158528|ENST00000433360|PPP1R9A	nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A	nc|ENSG00000158528|Q9ULJ8-4|PPP1R9A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.2731628417969	2	465.753798	929.493044	-1.9029	-0.00088627	1.716	0.00079923	-0.18688	-8.7038E-05	465.75438449206706	49.972	0.78141	46.831	46.558	47.34	-3.1416					22	14	2	0	0	0	0.028476	1	2849	2849		30.504	0	1	59756			53676	5959	44386	44422	58396	58396					0.025477127493331864
SLERLASRGLL	11	Unmodified	_SLERLASRGLL_					0	0	0			REV__nc|ENSG00000095319|Q5SRE5-2|NUP188	REV__nc|ENSG00000095319|Q5SRE5-2|NUP188	MULTI-MSMS	OvCa99_classI_Rep5	1	608.3674926757812	2	607.864412	1213.71427	2.4989	0.001519	1.8253	0.0011095	4.3242	0.0026285	608.3656156866059	115.59	1.3886	115.59	115.25	116.64	0					56	29	3	0	0	0	0.41398	1	13229	13229		60.118	3.3972	1	377720	+		53677	17287	44387	44423	58397	58397					0.11596152725815045
SLERSKSLL	9	Unmodified	_SLERSKSLL_					0	0	0		ENSG00000179046|ENST00000682553|TRIML2	ENSG00000179046|ENST00000682553|TRIML2	ENSG00000179046|ENST00000682553|TRIML2	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.3255004882812	2	516.806031	1031.59751	-0.37274	-0.00019263	4.2081	0.0021748	3.8353	0.0019821	516.8079527808676	83.228	1.419	80.932	80.381	81.8	-2.2963					62	29	3	0	0	0	0.02744	1	4841	4841		44.377	0	1	394680			53678	7797	44388	44424	58398	58398					0.08297414506046152
SLETIKKIV	9	Unmodified	_SLETIKKIV_					0	0	0		tr|A0A553SG23|A0A553SG23_NIACIMortranscriptionactivatordomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09920PE=4SV=1	tr|A0A553SG23|A0A553SG23_NIACIMortranscriptionactivatordomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09920PE=4SV=1	tr|A0A553SG23|A0A553SG23_NIACIMortranscriptionactivatordomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09920PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	515.8292846679688	2	515.828975	1029.6434	0.047341	2.442E-05	-0.33086	-0.00017066	-0.28352	-0.00014625	515.8287151259711	133.92	2.3165	132.79	132.47	134.79	-1.1226					129	46	5	0	0	0	0.69403	1	10901	10901		19.997	0.6368	1	885720			53679	33108	44389	44425	58399	58399					0.1297605968827611
SLEVEPLQI	9	Unmodified	_SLEVEPLQI_					0	0	0			REV__ENSG00000124942|ENST00000378024|AHNAK	REV__ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.286376953125	2	514.28714	1026.55973	2.0817	0.0010706	-2.2249	-0.0011442	-0.14318	-7.3636E-05	514.285848241367	130.08	1.0822	128.61	128.31	129.4	-1.4779					46	21	3	0	0	0	0.33652	1	12478	12478		58.782	9.3404	1	91366	+		53680	18711	44390	44426	58400	58400					0.04750903520562133
SLEVFKVD	8	Unmodified	_SLEVFKVD_					0	0	0			REV__ENSG00000221843|ENST00000447166|C2orf16	REV__ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	OvCa9_classI_Rep4_	4	467.7723083496094	2	468.755475	935.496398	0.26034	0.00012204	3.7713	0.0017678	4.0317	0.0018899	468.7564598300173	74.958	0.82055	71.727	71.337	72.157	-3.2308					25	16	2	0	0	0	0.028476	1	5927	5927		21.96	5.4867	1	46577	+		53681	23342	44391	44427	58401	58401					0.02606962803326951
SLEVKLLQ	8	Unmodified	_SLEVKLLQ_					0	0	0		ENST00000530242.1_1_8:145748705-145749668:+|nuORF	ENST00000530242.1_1_8:145748705-145749668:+|nuORF	ENST00000530242.1_1_8:145748705-145749668:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.2856750488281	2	465.286943	928.559333	-2.3863	-0.0011103	1.7939	0.00083465	-0.59247	-0.00027567	465.2877596727037	126.27	3.4031	124.85	124.48	127.88	-1.4143					181	67	5	0	0	0	0.61841	2	12138	12138;12156		60.118	3.3972	1	4410500			53682	13287	44392	44428	58402;58403	58402					0.09219528591370363
SLFCIILVL	9	Unmodified	_SLFCIILVL_					0	0	0			REV__ENSG00000156162|ENST00000414645|DPY19L4	REV__ENSG00000156162|ENST00000414645|DPY19L4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.25689697265625	2	510.811739	1019.60893	-0.5806	-0.00029658	4.3347	0.0022142	3.7541	0.0019177	510.8137448897101	94.143	0.52338	91.675	91.386	91.91	-2.4685					13	10	2	0	0	0	0.027462	1	8250	8250		24.203	2.2429	1	32762	+		53683	20463	44393	44429	58404	58404					0.09990520275823656
SLFDFNFEM	9	Oxidation (M)	_SLFDFNFEM(Oxidation (M))_		SLFDFNFEM(1)		SLFDFNFEM(85)	0	0	1			REV__tr|A0A7D6VR73|A0A7D6VR73_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04420PE=3SV=1	REV__tr|A0A7D6VR73|A0A7D6VR73_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04420PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	583.2485961914062	2	583.247157	1164.47976	0.67489	0.00039363	2.3521	0.0013718	3.027	0.0017655	583.2484035489165	130.41	1.8783	130.18	129.81	131.69	-0.22696					86	37	3	0	0	0	0.14998	1	12813	12813		84.916	16.129	1	516500	+		53684	31393	44394	44430	58405	58405		695			-0.09589906144924498
SLFDQVVKV	9	Unmodified	_SLFDQVVKV_					0	0	0		ENSG00000177807|ENST00000644903|KCNJ10	ENSG00000177807|ENST00000644903|KCNJ10	ENSG00000177807|ENST00000644903|KCNJ10	MULTI-MSMS	OvCa99_classI_Rep5	1	517.7989501953125	2	517.797675	1033.5808	1.6447	0.00085161	-0.37683	-0.00019512	1.2679	0.00065649	517.7976629712007	117.67	0.97816	117.67	117.27	118.25	0					49	20	4	0	0	0	0.16264	1	13478	13478		82.75	10.873	1	650450			53685	7712	44395	44431	58406	58406					0.06534913620089355
SLFEKGLKNV	10	Unmodified	_SLFEKGLKNV_					0	0	0		FBXL5|p.Q365Ffs*34|1|0.81|ENSG00000118564|chr4:15626899-15626908|AGTCTGGGTA/-|frameshift_variant;ENSG00000118564|ENST00000341285|FBXL5;nc|ENSG00000118564|Q9UKA1-2|FBXL5	FBXL5|p.Q365Ffs*34|1|0.81|ENSG00000118564|chr4:15626899-15626908|AGTCTGGGTA/-|frameshift_variant	FBXL5|p.Q365Ffs*34|1|0.81|ENSG00000118564|chr4:15626899-15626908|AGTCTGGGTA/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	567.830810546875	2	567.829506	1133.64446	0.12711	7.2176E-05	0.69833	0.00039653	0.82544	0.00046871	567.829954020892	73.566	0.50918	73.566	73.359	73.868	0					34	12	4	0	0	0	0.063542	1	7231	7231		124.08	44.629	1	2448500			53686	3316	44396	44432	58407	58407					0.08298274057187882
SLFFDLVSS	9	Unmodified	_SLFFDLVSS_					0	0	0			REV__ENST00000491982.1_1_22:36174014-36236265:-|nuORF	REV__ENST00000491982.1_1_22:36174014-36236265:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7633972167969	2	507.760758	1013.50696	-0.36461	-0.00018514	4.3644	0.0022161	3.9998	0.0020309	507.76291546317833	116.38	1.6525	115.02	114.75	116.4	-1.3645					79	31	4	0	0	0	0.62352	1	10886	10886		29.15	0	1	272140	+		53687	26686	44397	44433	58408	58408					0.0007494545776580708
SLFFRPIF	8	Unmodified	_SLFFRPIF_					0	0	0			REV__L1MA6_dup4553|chr14:32965001-32966588:+|1.0811544242595916|0.0860524180403581|3.65|423.0|82|2|anti-sense	REV__L1MA6_dup4553|chr14:32965001-32966588:+|1.0811544242595916|0.0860524180403581|3.65|423.0|82|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	513.7947998046875	2	513.792195	1025.56984	1.119	0.00057493	4.4185	0.0022702	5.5375	0.0028451	513.7943991863143	128.58	1.0865	127.49	127.22	128.31	-1.0933					43	21	3	0	0	0	0.74013	1	10141	10141		31.579	1.7373	1	164730	+		53688	28404	44398	44434	58409	58409					0.05807556036438655
SLFFWLASC	9	Unmodified	_SLFFWLASC_					0	0	0		ENST00000568961.5_1_16:71913820-71915305:-|nuORF	ENST00000568961.5_1_16:71913820-71915305:-|nuORF	ENST00000568961.5_1_16:71913820-71915305:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2801513671875	2	537.259871	1072.50519	1.6524	0.00088776	1.8121	0.00097358	3.4645	0.0018613	537.2608958478379	135.52	0.37674	135.52	135.27	135.64	0					13	7	3	0	0	0	0.027462	1	15782	15782		15.642	0	1	32795			53689	13876	44399	44435	58410	58410					-0.028163868318415552
SLFGFHVDRF	10	Unmodified	_SLFGFHVDRF_					0	0	0			REV__ENST00000437046.6_1_X:152713338-152720565:-|nuORF	REV__ENST00000437046.6_1_X:152713338-152720565:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	409.21112060546875	3	408.876857	1223.60874	0.58573	0.00023949	0.39768	0.0001626	0.98341	0.00040209	408.87755963842943	59.74	2.2898	59.74	59.414	61.704	0					142	55	5	0	0	0	0.59751	2	5244	5147;5244		42.338	12.94	1	48789000	+		53690	25788	44400	44436	58411;58412	58412					0.005882366001742412
SLFGGSVKL	9	Unmodified	_SLFGGSVKL_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	OvCa99_classI_Rep5	1	454.2671203613281	2	454.26601	906.517468	3.2184	0.001462	-0.74282	-0.00033744	2.4756	0.0011246	454.2655671501196	102.36	1.1832	102.36	102.08	103.26	0					71	27	4	0	0	0	0.049969	1	11423	11423		118.74	1.8395	1	7944100			53691	7083	44401	44437	58413	58413					0.06046972902856851
SLFGGSVKL	9	Unmodified	_SLFGGSVKL_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MSMS	OvCa9_classI_Rep2	2	454.26605224609375	2	454.26601	906.517468	0.67102	0.00030482	-0.67824	-0.0003081	-0.0072208	-3.2802E-06	454.26555939543033	102.96	2.0267	102.27	101.98	104.01	-0.68459					98	40	4	0	0	0	0.083631	2	9503	9503;9511		101.6	22.15	1	655790			53692	7083	44401	44437	58414;58415	58414					0.06046972902856851
SLFGGSVKL	9	Unmodified	_SLFGGSVKL_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	454.26601	906.517468	0.33477	0.00015207	-0.632	-0.0002871	-0.29724	-0.00013503	454.26560945248633	103.8	2.0849	102.37	102.08	104.16	-1.4347	0.028908	-2.5785E-05	NaN	118.74	93	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	787310			53693	7083	44401	44437							0.06046972902856851
SLFGGSVKL	9	Unmodified	_SLFGGSVKL_					0	0	0		ENSG00000170248|ENST00000307296|PDCD6IP;nc|ENSG00000170248|Q8WUM4-2|PDCD6IP;ENST00000477798.5_1_3:33840175-33866683:+|nuORF;nc|ENSG00000170248|Q8WUM4-3|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	ENSG00000170248|ENST00000307296|PDCD6IP	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	454.26601	906.517468	0.096914	4.4025E-05	-0.1218	-5.5332E-05	-0.02489	-1.1307E-05	454.2658073214655	104.47	1.8357	102.35	102.06	103.9	-2.1192	0.012202	0.00043775	NaN	118.74	89	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	709760			53694	7083	44401	44437							0.06046972902856851
SLFGLVGILL	10	Unmodified	_SLFGLVGILL_					0	0	0		tr|A0A553SSH6|A0A553SSH6_NIACIMajorfacilitatorsuperfamilydomain-containingprotein1OS=NialliacirculansOX=1397GN=CEQ21_03100PE=4SV=1	tr|A0A553SSH6|A0A553SSH6_NIACIMajorfacilitatorsuperfamilydomain-containingprotein1OS=NialliacirculansOX=1397GN=CEQ21_03100PE=4SV=1	tr|A0A553SSH6|A0A553SSH6_NIACIMajorfacilitatorsuperfamilydomain-containingprotein1OS=NialliacirculansOX=1397GN=CEQ21_03100PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.7925415039062	2	516.328611	1030.64267	1.8695	0.00096528	-2.2634	-0.0011687	-0.39389	-0.00020338	516.327409451924	121.17	0.94122	120.14	119.8	120.75	-1.0271					31	17	2	0	0	0	0.026982	1	9307	9307		16.473	0	1	31303			53695	34375	44402	44438	58416	58416					0.1285726503922433
SLFGQTIQ	8	Unmodified	_SLFGQTIQ_					0	0	0			REV__ENST00000441719.5_1_2:86705327-86705963:+|nuORF	REV__ENST00000441719.5_1_2:86705327-86705963:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	447.2410583496094	2	447.239993	892.465432	0.64054	0.00028647	-0.86552	-0.0003871	-0.22498	-0.00010062	447.2394937791373	59.958	1.2345	56.528	56.21	57.444	-3.43					61	24	4	0	0	0	0.36941	1	4028	4028		94.006	3.2298	1	966640	+		53696	25846	44403	44439	58417	58417					0.01489809489100935
SLFGQTIQ	8	Unmodified	_SLFGQTIQ_					0	0	0			REV__ENST00000441719.5_1_2:86705327-86705963:+|nuORF	REV__ENST00000441719.5_1_2:86705327-86705963:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	447.239993	892.465432	1.8965	0.00084817	-1.5311	-0.00068478	0.36532	0.00016339	447.2392009101325	59.521	1.3025	56.741	56.294	57.596	-2.7801	0.10634	-0.00035861	NaN	94.006	51	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176230	+		53697	25846	44403	44439							0.01489809489100935
SLFGSPVAK	9	Unmodified	_SLFGSPVAK_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;ENSG00000186260|ENST00000571589|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MSMS	OvCa9_classI_Rep4_	4	453.2589416503906	2	453.258185	904.501818	0.065973	2.9903E-05	-0.85874	-0.00038923	-0.79277	-0.00035933	453.257892988682	79.853	1.4109	77.102	76.797	78.208	-2.7514					83	28	5	0	0	0	0.2422	1	6491	6491		69.628	0.8408	1	370320			53698	8325	44404	44440	58418	58418					0.04574686385797122
SLFGSPVAK	9	Unmodified	_SLFGSPVAK_					0	0	0		nc|ENSG00000186260|Q9ULH7-4|MRTFB;nc|ENSG00000186260|Q9ULH7|MRTFB;ENSG00000186260|ENST00000571589|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MATCH	OvCa9_classI_Rep2	2		2	453.258185	904.501818	1.9202	0.00087033	-2.7356	-0.0012399	-0.81547	-0.00036962	453.2571643097264	78.997	1.9083	77.257	76.615	78.524	-1.7398	0.077787	-0.0006595	NaN	69.628	103	37	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117220			53699	8325	44404	44440							0.04574686385797122
SLFILYKV	8	Unmodified	_SLFILYKV_					0	0	0			REV__ENST00000571707.1_1_17:79609405-79612656:+|nuORF	REV__ENST00000571707.1_1_17:79609405-79612656:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	491.8007507324219	2	491.802229	981.589904	-1.7475	-0.00085943	-2.6888	-0.0013224	-4.4364	-0.0021818	491.80078103129136	107.83	3.5166	105.95	105.59	109.11	-1.8785					134	68	3	0	0	0	0.68714	1	9915	9915		45.952	0	1	2385200	+		53700	22305	44405	44441	58419	58419					0.09837306976419313
SLFKIWLV	8	Unmodified	_SLFKIWLV_					0	0	0		nc|ENSG00000128607|Q6PID8-2|KLHDC10;ENSG00000128607|ENST00000335420|KLHDC10	nc|ENSG00000128607|Q6PID8-2|KLHDC10	nc|ENSG00000128607|Q6PID8-2|KLHDC10	MULTI-MSMS	OvCa99_classI_Rep5	1	503.3108215332031	2	503.310221	1004.60589	1.171	0.00058937	0.3685	0.00018547	1.5395	0.00077483	503.3103349576855	145.18	1.088	145.18	144.84	145.93	0					40	22	3	0	0	0	0.56195	1	16965	16965		71.296	0	1	184560			53701	3895	44406	44442	58420	58420					0.10377013213326336
SLFKLIVKV	9	Unmodified	_SLFKLIVKV_					0	0	0		RIF1|p.L2186Qfs*51|1|0.07|ENSG00000080345|chr2:151466077-151466077|T/-|frameshift_variant;nc|ENSG00000080345|Q5UIP0-2|RIF1;ENSG00000080345|ENST00000444746|RIF1	RIF1|p.L2186Qfs*51|1|0.07|ENSG00000080345|chr2:151466077-151466077|T/-|frameshift_variant	RIF1|p.L2186Qfs*51|1|0.07|ENSG00000080345|chr2:151466077-151466077|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	523.8538208007812	2	523.852253	1045.68995	1.0803	0.00056593	0.73016	0.0003825	1.8105	0.00094843	523.8524883712396	109.17	1.4616	109.17	108.67	110.13	0					72	32	3	0	0	0	0.14855	2	12364	12344;12364		85.161	37.503	1	1416500			53702	1634	44407	44443	58421;58422	58422					0.16893544310232755
SLFKVGTK	8	Unmodified	_SLFKVGTK_					0	0	0			REV__FBXO28|p.N271Gfs*26|1|0.11|ENSG00000143756|chr1:224157448-224157472|CAAATGGTGCTGGCGTGACTGTTCT/-|frameshift_variant	REV__FBXO28|p.N271Gfs*26|1|0.11|ENSG00000143756|chr1:224157448-224157472|CAAATGGTGCTGGCGTGACTGTTCT/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	440.269287109375	2	440.268553	878.522553	-2.654	-0.0011685	2.3745	0.0010454	-0.27952	-0.00012306	440.26950058570867	153.36	0.68338	153.13	152.88	153.56	-0.22696					26	17	2	0	0	0	0.74817	1	15598	15598		15.642	0.77694	1	20899	+		53703	28130	44408	44444	58423	58423					0.07843276765470364
SLFLGKPDL	9	Unmodified	_SLFLGKPDL_					0	0	0			REV__tr|A0A7D6VY04|A0A7D6VY04_9CLOTDNAmismatchrepairproteinMutLOS=ClostridiumintestinaleOX=36845GN=mutLPE=3SV=1	REV__tr|A0A7D6VY04|A0A7D6VY04_9CLOTDNAmismatchrepairproteinMutLOS=ClostridiumintestinaleOX=36845GN=mutLPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	495.2867126464844	2	495.286943	988.559333	0.072907	3.611E-05	-0.4151	-0.0002056	-0.3422	-0.00016949	495.28661892712034	110.12	1.7438	108.97	108.66	110.41	-1.1444					79	33	4	0	0	0	0.40818	1	7931	7931		51.193	1.6567	1	451340	+		53704	31800	44409	44445	58424	58424					0.0645952859136969
SLFLGKPDL	9	Unmodified	_SLFLGKPDL_					0	0	0			REV__tr|A0A7D6VY04|A0A7D6VY04_9CLOTDNAmismatchrepairproteinMutLOS=ClostridiumintestinaleOX=36845GN=mutLPE=3SV=1	REV__tr|A0A7D6VY04|A0A7D6VY04_9CLOTDNAmismatchrepairproteinMutLOS=ClostridiumintestinaleOX=36845GN=mutLPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.28656005859375	2	495.286943	988.559333	0.77728	0.00038497	-1.2443	-0.00061627	-0.46699	-0.00023129	495.28623750914176	110.62	1.8947	109.02	108.75	110.65	-1.6011					75	35	3	0	0	0	0.26076	1	10184	10184		67.494	9.2637	1	550260	+		53705	31800	44409	44445	58425	58425					0.0645952859136969
SLFLSRLDL	9	Unmodified	_SLFLSRLDL_					0	0	0			REV__ENST00000577164.1_1_17:1617268-1619543:-|nuORF	REV__ENST00000577164.1_1_17:1617268-1619543:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	532.810791015625	2	532.310949	1062.60735	2.4397	0.0012987	-3.9815	-0.0021194	-1.5417	-0.00082069	532.3108034510865	116.26	1.4146	116.26	115.54	116.95	0					57	30	4	0	0	0	0.2422	1	13299	13299		69.628	0	1	1546600	+		53706	27789	44410	44446	58426	58426					0.07854602511406483
SLFLSRLDL	9	Unmodified	_SLFLSRLDL_					0	0	0			REV__ENST00000577164.1_1_17:1617268-1619543:-|nuORF	REV__ENST00000577164.1_1_17:1617268-1619543:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.7625122070312	2	532.310949	1062.60735	-2.3618	-0.0012572	2.336	0.0012435	-0.025786	-1.3726E-05	532.3118957805194	118.95	0.67043	117.6	117.31	117.98	-1.3444					28	12	3	0	0	0	0.02744	1	11157	11157		29.17	0	1	70942	+		53707	27789	44410	44446	58427	58427					0.07854602511406483
SLFLTSTWL	9	Unmodified	_SLFLTSTWL_					0	0	0			REV__ENST00000426882.5_1_6:30294167-30294284:-|nuORF	REV__ENST00000426882.5_1_6:30294167-30294284:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.3118286132812	2	534.292225	1066.5699	-2.0415	-0.0010907	-1.8675	-0.00099779	-3.909	-0.0020885	534.2911897602468	124.5	1.2461	123.11	122.87	124.11	-1.3908					36	23	3	0	0	0	0.02741	1	11901	11901		71.296	2.5089	1	51398	+		53708	25672	44411	44447	58428	58428					0.039275112458199146
SLFLTSTWL	9	Unmodified	_SLFLTSTWL_					0	0	0			REV__ENST00000426882.5_1_6:30294167-30294284:-|nuORF	REV__ENST00000426882.5_1_6:30294167-30294284:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	534.292225	1066.5699	2.1768	0.0011631	-5.8473	-0.0031242	-3.6705	-0.0019611	534.2887929725766	124.19	2.4445	123.15	122.82	125.26	-1.0377	-0.10858	-0.0026658	NaN	71.296	62	46	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47866	+		53709	25672	44411	44447							0.039275112458199146
SLFLVKILEE	10	Unmodified	_SLFLVKILEE_					0	0	0		ENSG00000169330|ENST00000305428|MINAR1	ENSG00000169330|ENST00000305428|MINAR1	ENSG00000169330|ENST00000305428|MINAR1	MULTI-MSMS	OvCa9_classI_Rep3	3	595.8532104492188	2	595.855189	1189.69583	0.065118	3.8801E-05	-2.7305	-0.001627	-2.6654	-0.0015882	595.8535881527235	87.861	1.3559	85.684	85.396	86.752	-2.1768					74	26	4	0	0	0	0.47142	1	5306	5306		58.23	8.7884	1	684060			53710	7001	44412	44448	58429	58429					0.10856598031227804
SLFPALPIRIP	11	Unmodified	_SLFPALPIRIP_					0	0	0		ENST00000600406.1_2_19:49378777-49379227:+|nuORF	ENST00000600406.1_2_19:49378777-49379227:+|nuORF	ENST00000600406.1_2_19:49378777-49379227:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	612.8560180664062	2	612.379166	1222.74378	0.87199	0.00053399	1.749	0.001071	2.621	0.001605	612.3805550347714	151.93	0.42146	151.93	151.7	152.12	0					13	8	2	0	0	0	0.025759	1	17808	17808		42.864	22.867	1	39503			53711	14216	44413	44449	58430	58430					0.1413171674194018
SLFPGKLEV	9	Unmodified	_SLFPGKLEV_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	OvCa99_classI_Rep5	1	495.28741455078125	2	495.286943	988.559333	1.0757	0.0005328	0.62286	0.00030849	1.6986	0.00084129	495.2871476261306	109.44	1.2482	109.44	109.11	110.35	0					75	27	4	0	0	0	0.043101	3	12406	12383;12406;12431		124.08	33.71	1	7071600			53712	7708	44414	44450	58431;58432;58433	58432					0.0645952859136969
SLFPGKLEV	9	Unmodified	_SLFPGKLEV_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	OvCa9_classI_Rep2	2	495.28704833984375	2	495.286943	988.559333	0.33859	0.0001677	-0.72846	-0.0003608	-0.38988	-0.0001931	495.28647269641976	109.21	1.5826	109.04	108.72	110.3	-0.17351					86	31	5	0	0	0	0.2422	3	10251	10245;10251;10263		69.628	3.2864	1	489630			53713	7708	44414	44450	58434;58435;58436	58435					0.0645952859136969
SLFPGKLEV	9	Unmodified	_SLFPGKLEV_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	OvCa9_classI_Rep3	3	495.2866516113281	2	495.286943	988.559333	0.072907	3.611E-05	-0.4151	-0.0002056	-0.3422	-0.00016949	495.28661892712034	110.12	1.7438	108.97	108.66	110.41	-1.1444					79	33	4	0	0	0	0.26076	3	7942	7936;7942;7974		67.494	5.3863	1	451340			53714	7708	44414	44450	58437;58438;58439	58438					0.0645952859136969
SLFPGKLEV	9	Unmodified	_SLFPGKLEV_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.287841796875	2	495.286943	988.559333	0.77728	0.00038497	-1.2443	-0.00061627	-0.46699	-0.00023129	495.28623750914176	110.62	1.8947	109.02	108.75	110.65	-1.6011					75	35	3	0	0	0	0.2784	2	10173	10173;10196		65.465	3.7741	1	550260			53715	7708	44414	44450	58440;58441	58440					0.0645952859136969
SLFPGKLEVV	10	Unmodified	_SLFPGKLEVV_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	OvCa9_classI_Rep2	2	544.8203125	2	544.82115	1087.62775	-1.048	-0.000571	1.0059	0.00054802	-0.042178	-2.298E-05	544.8215950523165	116.13	1.386	116.01	115.64	117.02	-0.11777					79	27	4	0	0	0	0.4826	4	11092	11080;11086;11092;11105		56.632	10.66	1	386720			53716	7708	44415	44451	58442;58443;58444;58445	58444					0.08743773171227076
SLFPGKLEVV	10	Unmodified	_SLFPGKLEVV_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	OvCa9_classI_Rep3	3	544.8223876953125	2	544.82115	1087.62775	-0.94668	-0.00051577	0.81422	0.0004436	-0.13246	-7.2168E-05	544.8214432628807	117.05	1.3369	116.02	115.7	117.03	-1.0324					73	26	4	0	0	0	0.30325	5	8771	8758;8764;8771;8777;8804		80.455	17.148	1	405390			53717	7708	44415	44451	58446;58447;58448;58449;58450	58448					0.08743773171227076
SLFPGKLEVV	10	Unmodified	_SLFPGKLEVV_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000580966.1_1_17:18149569-18150009:-|nuORF	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.8199462890625	2	544.82115	1087.62775	-0.96512	-0.00052582	0.77423	0.00042182	-0.19089	-0.000104	544.8214508612447	117.3	1.5207	115.94	115.51	117.03	-1.3645					81	28	4	0	0	0	0.47131	1	10964	10964		58.246	7.0535	1	408830			53718	7708	44415	44451	58451	58451					0.08743773171227076
SLFPGQVVI	9	Unmodified	_SLFPGQVVI_					0	0	0		ENSG00000014138|ENST00000265465|POLA2;nc|ENSG00000014138|Q14181-2|POLA2;ENST00000527850.5_1_11:65029833-65063521:+|nuORF	ENSG00000014138|ENST00000265465|POLA2	ENSG00000014138|ENST00000265465|POLA2	MULTI-MSMS	OvCa99_classI_Rep5	1	480.2839050292969	2	480.28166	958.548768	0.72693	0.00034913	1.8303	0.00087905	2.5572	0.0012282	480.2822813918279	140.83	0.76993	140.83	140.31	141.08	0					24	15	2	0	0	0	0.35444	1	16439	16439		56.721	1.2168	1	70526			53719	995	44416	44452	58452	58452					0.0678354593695758
SLFPKDQGGV	10	Unmodified	_SLFPKDQGGV_					0	0	0			REV__nc|ENSG00000242019|Q8N743|KIR3DL3	REV__nc|ENSG00000242019|Q8N743|KIR3DL3	MULTI-MSMS	OvCa9_classI_Rep3	3	524.2778930664062	2	524.277106	1046.53966	1.2201	0.00063968	1.7979	0.0009426	3.018	0.0015823	524.2778574863617	62.52	2.1768	59.486	58.872	61.049	-3.0339					76	45	2	0	0	0	0.64697	1	2271	2271		36.447	0.82846	1	81064	+		53720	23453	44417	44453	58453	58453					0.01825152580613576
SLFPSSSRR	9	Unmodified	_SLFPSSSRR_					0	0	0			REV__nc|ENSG00000167258|Q9NYV4-2|CDK12	REV__nc|ENSG00000167258|Q9NYV4-2|CDK12	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.7800903320312	2	518.780348	1035.54614	-1.2287	-0.00063741	0.18854	9.781E-05	-1.0401	-0.0005396	518.7804455688876	41.702	1.5448	38.722	38.388	39.933	-2.9804					74	29	3	0	0	0	0.59259	1	1873	1873		32.812	0	1	1689300	+		53721	21265	44418	44454	58454	58454					0.029790905319941885
SLFSDKQMI	9	Unmodified	_SLFSDKQMI_					0	0	0		ENSG00000104738|ENST00000649973|MCM4;MCM4|p.A741Lfs*8|1|0.32|ENSG00000104738|chr8:47974817-47974818|-/TT|frameshift_variant	ENSG00000104738|ENST00000649973|MCM4	ENSG00000104738|ENST00000649973|MCM4	MULTI-MSMS	OvCa99_classI_Rep5	1	534.7734985351562	2	534.773342	1067.53213	2.9866	0.0015972	-0.87386	-0.00046731	2.1128	0.0011299	534.7727553119239	97.331	0.47365	97.331	97.093	97.566	0					19	10	2	0	0	0	0.40818	1	10699	10699		51.193	3.2332	1	738710			53722	2389	44419	44455	58455	58455					0.0010667698868473963
SLFSFRGR	8	Unmodified	_SLFSFRGR_					0	0	0		SCN1A|p.N804Tfs*14|1|0.51|ENSG00000144285|chr2:166041235-166041235|T/-|frameshift_variant;nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A;ENST00000480032.4_1_2:166152333-166226884:+|nuORF;SCN2A|p.D1935Vfs*2|1|0.11|ENSG00000136531|chr2:165389608-165389609|-/GTTT|frameshift_variant;nc|ENSG00000136531|Q99250-2|SCN2A;ENSG00000136531|ENST00000375437|SCN2A	SCN1A|p.N804Tfs*14|1|0.51|ENSG00000144285|chr2:166041235-166041235|T/-|frameshift_variant	SCN1A|p.N804Tfs*14|1|0.51|ENSG00000144285|chr2:166041235-166041235|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	485.2655029296875	2	485.266876	968.519199	0.57159	0.00027738	-2.0904	-0.0010144	-1.5188	-0.00073702	485.265720307919	71.372	2.094	68.865	68.281	70.375	-2.5071					105	39	4	0	0	0	0.66057	1	5747	5747		51.335	0	1	647640			53723	5139	44420	44456	58456	58456					0.03368026711473249
SLFSFRGR	8	Unmodified	_SLFSFRGR_					0	0	0		SCN1A|p.N804Tfs*14|1|0.51|ENSG00000144285|chr2:166041235-166041235|T/-|frameshift_variant;nc|ENSG00000144285|P35498-3|SCN1A;nc|ENSG00000144285|P35498-2|SCN1A;ENSG00000144285|ENST00000674923|SCN1A;ENST00000480032.4_1_2:166152333-166226884:+|nuORF;SCN2A|p.D1935Vfs*2|1|0.11|ENSG00000136531|chr2:165389608-165389609|-/GTTT|frameshift_variant;nc|ENSG00000136531|Q99250-2|SCN2A;ENSG00000136531|ENST00000375437|SCN2A	SCN1A|p.N804Tfs*14|1|0.51|ENSG00000144285|chr2:166041235-166041235|T/-|frameshift_variant	SCN1A|p.N804Tfs*14|1|0.51|ENSG00000144285|chr2:166041235-166041235|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.2668762207031	2	485.266876	968.519199	-1.2201	-0.00059209	-1.0151	-0.00049259	-2.2352	-0.0010847	485.2663430336786	72.332	2.0813	68.936	68.569	70.65	-3.3961					119	42	3	0	0	0	0.62474	1	5587	5587		58.782	0	1	2530900			53724	5139	44420	44456	58457	58457					0.03368026711473249
SLFSIENDT	9	Unmodified	_SLFSIENDT_					0	0	0			REV__tr|A0A7D6ZHX0|A0A7D6ZHX0_9CLOTDUF2225domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04645PE=4SV=1	REV__tr|A0A7D6ZHX0|A0A7D6ZHX0_9CLOTDUF2225domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04645PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.7947998046875	2	513.242929	1024.47131	1.0004	0.00051343	3.0596	0.0015703	4.06	0.0020838	513.2439760110526	128.88	0.24611	127.79	127.62	127.86	-1.0933					7	4	2	0	0	0	0.027462	1	10141	10141		56.721	25.142	1	5540.2	+		53725	32040	44421	44457	58458	58458					-0.03995136789922071
SLFSKAPNN	9	Unmodified	_SLFSKAPNN_					0	0	0			REV__ENST00000357258.8_2_3:114051185-114051284:-|nuORF	REV__ENST00000357258.8_2_3:114051185-114051284:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.7976379394531	2	489.256174	976.497795	-0.94731	-0.00046348	-1.8179	-0.00088944	-2.7653	-0.0013529	489.2557882141148	50.203	1.0956	50.203	49.768	50.863	0					43	24	3	0	0	0	0.027462	1	3858	3858		32.812	0	1	334920	+		53726	24781	44422	44458	58459	58459					0.008605968920846863
SLFSKLVV	8	Unmodified	_SLFSKLVV_					0	0	0			REV__ENSG00000206043|ENST00000579455|C18orf63	REV__ENSG00000206043|ENST00000579455|C18orf63	MULTI-MSMS	OvCa99_classI_Rep5	1	446.7782287597656	2	446.778754	891.542954	0.32087	0.00014336	-3.3456	-0.0014947	-3.0247	-0.0013514	446.7771119594846	55.951	1.1024	55.951	55.559	56.662	0					57	26	4	0	0	0	0.7224	1	4597	4597		38.806	3.1879	1	3029500	+		53727	23231	44423	44459	58460	58460					0.0928444742528427
SLFSSKLST	9	Unmodified	_SLFSSKLST_					0	0	0		TMEM48-MTMR12|1|fusion;TMEM48-MTMR12|2|fusion;nc|ENSG00000058804|Q9BTX1-4|NDC1;nc|ENSG00000058804|Q9BTX1-6|NDC1;nc|ENSG00000058804|Q9BTX1-5|NDC1;nc|ENSG00000058804|Q9BTX1-2|NDC1;ENSG00000058804|ENST00000371429|NDC1	TMEM48-MTMR12|1|fusion	TMEM48-MTMR12|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	485.26605224609375	2	485.266207	968.517862	0.5716	0.00027738	-0.71238	-0.00034569	-0.14078	-6.8317E-05	485.265720307919	71.372	2.094	68.865	68.281	70.375	-2.5071					105	39	4	0	0	0	0.44568	1	5735	5735		47.657	0	1	647640			53728	32967	44424	44460	58461	58461					0.032343478320512986
SLFSVLVRV	9	Unmodified	_SLFSVLVRV_					0	0	0		ENST00000496599.3_1_8:21959616-21960439:+|nuORF;ENSG00000158863|ENST00000289921|FHIP2B	ENST00000496599.3_1_8:21959616-21960439:+|nuORF	ENST00000496599.3_1_8:21959616-21960439:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	510.3168640136719	2	510.316035	1018.61752	1.356	0.00069196	0.48083	0.00024537	1.8368	0.00093734	510.3161818589875	130.94	0.80644	130.94	130.72	131.53	0					33	16	3	0	0	0	0.13504	1	15197	15197		87.696	0	1	346740			53729	5977	44425	44461	58462	58462					0.10895210236674302
SLFVEWAI	8	Unmodified	_SLFVEWAI_					0	0	0			REV__nc|ENSG00000122335|Q96JX3-2|SERAC1	REV__nc|ENSG00000122335|Q96JX3-2|SERAC1	MULTI-MSMS	OvCa9_classI_Rep3	3	482.7604675292969	2	482.760561	963.506569	2.1391	0.0010327	-3.0117	-0.001454	-0.87261	-0.00042126	482.7588804234167	57.803	3.1186	54.676	53.456	56.575	-3.1264					158	85	3	0	0	0	0.73626	1	1809	1809		33.516	0.70317	1	89902	+		53730	28823	44426	44462	58463	58463					0.023355705285666772
SLFVLGAPVS	10	Unmodified	_SLFVLGAPVS_					0	0	0			REV__ENST00000533086.5_1_19:15226257-15226476:-|nuORF	REV__ENST00000533086.5_1_19:15226257-15226476:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.28619384765625	2	495.286943	988.559333	0.77728	0.00038497	-1.2443	-0.00061627	-0.46699	-0.00023129	495.28623750914176	110.62	1.8947	109.02	108.75	110.65	-1.6011					75	35	3	0	0	0	0.52321	1	10209	10209		51.335	1.7994	1	550260	+		53731	27253	44427	44463	58464	58464					0.06459528591381059
SLFVPVPPSEK	11	Unmodified	_SLFVPVPPSEK_					0	0	0		ENST00000536265.5_1_12:31242773-31256767:+|nuORF;ENST00000543026.5_1_12:31242773-31246356:+|nuORF	ENST00000536265.5_1_12:31242773-31256767:+|nuORF	ENST00000536265.5_1_12:31242773-31256767:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	401.2109069824219	3	400.560535	1198.65977	1.9734	0.00079047	-0.16191	-6.4854E-05	1.8115	0.00072561	400.89504454362935	20.886	0.45888	19.547	19.311	19.77	-1.3386					13	9	2	0	0	0	0.02605	1	77	77		21.032	3.5642	1	17055			53732	13388	44428	44464	58465	58465					0.06839140854367542
SLFVSLCLFV	10	Carbamidomethyl (C)	_SLFVSLC(Carbamidomethyl (C))LFV_	SLFVSLC(1)LFV		SLFVSLC(42)LFV		0	1	0			REV__ENST00000571669.6_1_17:2320702-2320789:-|nuORF	REV__ENST00000571669.6_1_17:2320702-2320789:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	592.8243408203125	2	592.822835	1183.63112	-0.62327	-0.00036949	3.1473	0.0018658	2.524	0.0014963	592.8246839253696	95.32	2.6195	94.292	93.923	96.542	-1.0281					186	52	8	0	0	0	0.59703	1	8629	8629		42.396	6.7778	1	2906500	+		53733	27744	44429	44465	58466	58466	341				0.04664699953559648
SLFVYIYGFK	10	Unmodified	_SLFVYIYGFK_					0	0	0			REV__tr|A0A7D7AG02|A0A7D7AG02_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07220PE=4SV=1	REV__tr|A0A7D7AG02|A0A7D7AG02_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07220PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	412.9276123046875	3	412.893625	1235.65905	-0.52251	-0.00021574	-4.3571	-0.001799	-4.8796	-0.0020147	413.22673390996664	55.285	0.76424	51.99	51.648	52.412	-3.2944					21	14	3	0	0	0	0.026916	1	3461	3461		43.651	15.074	1	14562	+		53734	32720	44430	44466	58467	58467					0.05064346205290349
SLFWHEPAVLI	11	Unmodified	_SLFWHEPAVLI_					0	0	0			REV__ENST00000477418.2_1_1:27206170-27212721:-|nuORF	REV__ENST00000477418.2_1_1:27206170-27212721:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	437.9098815917969	3	437.908046	1310.70231	0.88556	0.00038779	2.5004	0.0010949	3.386	0.0014827	437.9090479310282	33.098	0.99093	30.403	30.203	31.193	-2.6954					44	19	4	0	0	0	0.72466	1	860	860		20.03	1.4994	1	107640	+		53735	26388	44431	44467	58468	58468					0.059385359826137574
SLFWHEPAVLI	11	Unmodified	_SLFWHEPAVLI_					0	0	0			REV__ENST00000477418.2_1_1:27206170-27212721:-|nuORF	REV__ENST00000477418.2_1_1:27206170-27212721:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	437.908046	1310.70231	0.031193	1.366E-05	3.0039	0.0013154	3.0351	0.0013291	437.90951742598594	32.892	0.49482	30.182	30.025	30.52	-2.7097	-0.11028	0.00060905	NaN	20.03	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17990	+		53736	26388	44431	44467							0.059385359826137574
SLGAESHLSL	10	Unmodified	_SLGAESHLSL_					0	0	0		ENST00000598936.1_1_19:50016657-50017545:+|nuORF;ENST00000452439.1_1_19:50016657-50027781:+|nuORF;FCGRT|p.N359*|1|0.14|ENSG00000104870|chr19:49526093-49526094|-/TA|frameshift_variant;ENSG00000104870|ENST00000221466|FCGRT	ENST00000598936.1_1_19:50016657-50017545:+|nuORF	ENST00000598936.1_1_19:50016657-50017545:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	507.26751708984375	2	507.266739	1012.51892	-1.2853	-0.00065199	1.089	0.00055239	-0.19635	-9.9601E-05	507.2672424550914	87.214	2.7627	85.038	84.38	87.143	-2.1768					150	54	5	0	0	0	0.35465	1	5262	5262		74.255	0	1	1838000			53737	2402	44432	44468	58469	58469					0.013165622009523759
SLGALGGLSGL	11	Unmodified	_SLGALGGLSGL_					0	0	0			REV__ENSG00000188021|ENST00000338222|UBQLN2	REV__ENSG00000188021|ENST00000338222|UBQLN2	MULTI-MSMS	OvCa9_classI_Rep2	2	472.7746887207031	2	472.7742	943.533846	-0.37011	-0.00017498	0.13698	6.4758E-05	-0.23313	-0.00011022	472.7741276792271	69.709	2.1265	67.139	66.615	68.741	-2.5707					121	41	5	0	0	0	0.10598	1	5557	5557		95.815	6.7863	1	732550	+		53738	22683	44433	44469	58470	58470					0.059820540689429436
SLGCALAPGAL	11	Carbamidomethyl (C)	_SLGC(Carbamidomethyl (C))ALAPGAL_	SLGC(1)ALAPGAL		SLGC(69)ALAPGAL		0	1	0			REV__ENSG00000132326|ENST00000254657|PER2	REV__ENSG00000132326|ENST00000254657|PER2	MULTI-MSMS	OvCa9_classI_Rep3	3	515.2708740234375	2	515.273509	1028.53247	0.40633	0.00020937	-3.7161	-0.0019148	-3.3098	-0.0017054	515.2713126551835	103.15	2.4022	101.67	101.15	103.55	-1.4763					87	45	4	0	0	0	0.29488	1	7128	7128		68.787	15.85	1	356040	+		53739	19068	44434	44470	58471	58471	209				0.019340967085099692
SLGDELLVIN	10	Unmodified	_SLGDELLVIN_					0	0	0		ENSG00000133401|ENST00000438447|PDZD2;ENST00000502489.5_1_5:31983264-32077762:+|nuORF;PDZD2|p.P1120Tfs*15|1|0.25|ENSG00000133401|chr5:32074461-32074462|-/G|frameshift_variant	ENSG00000133401|ENST00000438447|PDZD2	ENSG00000133401|ENST00000438447|PDZD2	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.2593994140625	2	536.797872	1071.58119	0.094753	5.0863E-05	2.9865	0.0016031	3.0813	0.001654	536.7983653640972	86.957	0.80946	84.781	84.38	85.19	-2.1768					27	15	3	0	0	0	0.026891	1	5162	5162		31.53	7.0106	1	81952			53740	4219	44435	44471	58472	58472					0.04826288549293167
SLGEHVKSL	9	Unmodified	_SLGEHVKSL_					0	0	0			REV__ENST00000296257.9_1_3:185347643-185347886:+|nuORF	REV__ENST00000296257.9_1_3:185347643-185347886:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	485.2709655761719	2	485.271824	968.529095	-0.47167	-0.00022889	-0.086243	-4.1851E-05	-0.55791	-0.00027074	485.27178494989886	48.436	2.0466	48.436	47.984	50.031	0					110	46	5	0	0	0	0.22621	1	3595	3595		71.877	3.0906	1	17138000	+		53741	24199	44436	44472	58473	58473					0.04357169926197457
SLGELLGIK	9	Unmodified	_SLGELLGIK_					0	0	0		nc|ENSG00000133943|Q7Z3D6-5|DGLUCY	nc|ENSG00000133943|Q7Z3D6-5|DGLUCY	nc|ENSG00000133943|Q7Z3D6-5|DGLUCY	MULTI-MSMS	OvCa9_classI_Rep2	2	465.2862548828125	2	465.286943	928.559333	0.40865	0.00019014	-0.89022	-0.00041421	-0.48157	-0.00022407	465.2865075151942	125.02	3.4561	124.79	124.42	127.87	-0.2359					183	69	5	0	0	0	0.27001	1	12294	12294		66.429	0	1	4060300			53742	15024	44437	44473	58474	58474					0.09219528591381732
SLGEVNALGLE	11	Unmodified	_SLGEVNALGLE_					0	0	0			REV__SCN2A|p.D1935Vfs*2|1|0.11|ENSG00000136531|chr2:165389608-165389609|-/GTTT|frameshift_variant;REV__nc|ENSG00000144285|P35498-3|SCN1A	REV__SCN2A|p.D1935Vfs*2|1|0.11|ENSG00000136531|chr2:165389608-165389609|-/GTTT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	551.7928466796875	2	551.292953	1100.57135	2.0909	0.0011527	-4.2955	-0.0023681	-2.2046	-0.0012154	551.7907091173909	84.879	1.3268	84.879	84.135	85.462	0					95	31	5	0	0	0	0.38665	1	8882	8882		62.107	0	1	4478200	+		53743	19391;19900	44438	44474	58475	58475					0.0250910054387532
SLGFIDRVID	10	Unmodified	_SLGFIDRVID_					0	0	0		tr|A0A7D6ZWA8|A0A7D6ZWA8_9CLOTChemotaxisproteinCheAOS=ClostridiumintestinaleOX=36845GN=HZF06_17060PE=4SV=1	tr|A0A7D6ZWA8|A0A7D6ZWA8_9CLOTChemotaxisproteinCheAOS=ClostridiumintestinaleOX=36845GN=HZF06_17060PE=4SV=1	tr|A0A7D6ZWA8|A0A7D6ZWA8_9CLOTChemotaxisproteinCheAOS=ClostridiumintestinaleOX=36845GN=HZF06_17060PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	568.7947998046875	2	567.811313	1133.60807	-1.3343	-0.00075761	0.76186	0.00043259	-0.5724	-0.00032501	567.8118651180483	100.82	1.1906	100.06	99.377	100.57	-0.764					53	23	4	0	0	0	0.026826	1	9214	9214		29.17	0	1	143110			53744	35834	44439	44475	58476	58476					0.04661397160475644
SLGFKMLSE	9	Unmodified	_SLGFKMLSE_					0	0	0			REV__tr|A0A553SLY8|A0A553SLY8_NIACILrp/AsnCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21565PE=4SV=1	REV__tr|A0A553SLY8|A0A553SLY8_NIACILrp/AsnCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21565PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.7934265136719	2	506.26261	1010.51067	-0.3782	-0.00019147	3.6571	0.0018514	3.2789	0.00166	506.264369733198	87.075	0.95299	84.448	84.152	85.105	-2.6269					30	18	2	0	0	0	0.027452	1	7360	7360		20.837	1.7336	1	96027	+		53745	30279	44440	44476	58477	58477					0.005832919599811248
SLGFKMLSE	9	Unmodified	_SLGFKMLSE_					0	0	0			REV__tr|A0A553SLY8|A0A553SLY8_NIACILrp/AsnCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21565PE=4SV=1	REV__tr|A0A553SLY8|A0A553SLY8_NIACILrp/AsnCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21565PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	506.26261	1010.51067	-1.0656	-0.0005395	3.9917	0.0020208	2.926	0.0014813	506.264542268855	85.86	1.2847	84.369	84.146	85.431	-1.4906	-0.0084069	-0.00019638	NaN	20.837	43	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66057	+		53746	30279	44440	44476							0.005832919599811248
SLGFKMLSE	9	Unmodified	_SLGFKMLSE_					0	0	0			REV__tr|A0A553SLY8|A0A553SLY8_NIACILrp/AsnCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21565PE=4SV=1	REV__tr|A0A553SLY8|A0A553SLY8_NIACILrp/AsnCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21565PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	506.26261	1010.51067	-1.6032	-0.00081166	4.9467	0.0025043	3.3434	0.0016926	506.26497712754974	86.493	1.1595	84.316	84.03	85.19	-2.1768	-0.061627	0.00077059	NaN	20.837	38	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94180	+		53747	30279	44440	44476							0.005832919599811248
SLGFWCVK	8	Unmodified	_SLGFWCVK_					0	0	0		nc|ENSG00000113597|A5PLN9-7|TRAPPC13;ENST00000512009.5_1_5:64920875-64956772:+|nuORF	nc|ENSG00000113597|A5PLN9-7|TRAPPC13	nc|ENSG00000113597|A5PLN9-7|TRAPPC13	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.8139343261719	2	470.241481	938.468409	1.8615	0.00087536	2.6922	0.001266	4.5537	0.0021413	470.2429768366143	67.651	1.0765	64.161	63.938	65.014	-3.4902					45	21	3	0	0	0	0.028476	1	4954	4954		60.294	34.844	1	183700			53748	12990	44441	44477	58478	58478					-0.003286386577428857
SLGGDPRPV	9	Unmodified	_SLGGDPRPV_					0	0	0		ENSG00000128165|ENST00000395737|ADM2	ENSG00000128165|ENST00000395737|ADM2	ENSG00000128165|ENST00000395737|ADM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	449.28656005859375	2	449.243067	896.47158	0.62692	0.00028164	1.4993	0.00067353	2.1262	0.00095517	449.2431870417796	52.672	0.52242	52.672	52.434	52.956	0					18	11	2	0	0	0	0.02744	1	4180	4180		44.377	0	1	228260			53749	3865	44442	44478	58479	58479					0.019203277206202074
SLGGRVVEGII	11	Unmodified	_SLGGRVVEGII_					0	0	0			REV__tr|A0A7D6VNK7|A0A7D6VNK7_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18260PE=3SV=1	REV__tr|A0A7D6VNK7|A0A7D6VNK7_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18260PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.329345703125	2	550.327131	1098.63971	1.1776	0.00064806	-1.611	-0.00088659	-0.43344	-0.00023853	550.3261861557347	85.082	1.568	82.435	82.025	83.593	-2.6463					91	31	4	0	0	0	0.5804	1	7192	7192		46.457	2.0796	1	1352000	+		53750	31189	44443	44479	58480	58480					0.09433389914443069
SLGHPGQL	8	Unmodified	_SLGHPGQL_					0	0	0			REV__ENST00000415560.1_1_X:26766465-26767074:+|nuORF	REV__ENST00000415560.1_1_X:26766465-26767074:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.5511169433594	2	404.719227	807.423902	0.9061	0.00036672	-0.53634	-0.00021707	0.36975	0.00014965	404.71892744023376	39.085	0.36031	39.085	38.927	39.287	0					13	7	3	0	0	0	0.028476	1	2269	2269		42.474	0	1	89036	+		53751	25531	44444	44480	58481	58481					0.012486735204333854
SLGIMRRVLPP	11	Unmodified	_SLGIMRRVLPP_					0	0	0		ENSG00000072080|ENST00000168148|SPP2	ENSG00000072080|ENST00000168148|SPP2	ENSG00000072080|ENST00000168148|SPP2	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8709716796875	2	619.873725	1237.7329	-3.6059	-0.0022352	-3.3723	-0.0020904	-6.9782	-0.0043256	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.67529	1	12761	12761		37.812	6.2817	1	664560			53752	1463	44445	44481	58482	58482					0.12353991096006212
SLGIPVNHLI	10	Unmodified	_SLGIPVNHLI_					0	0	0		ENSG00000161055|ENST00000292641|SCGB3A1;ENST00000512120.1_1_5:180017233-180018052:-|nuORF	ENSG00000161055|ENST00000292641|SCGB3A1	ENSG00000161055|ENST00000292641|SCGB3A1	MULTI-MSMS	OvCa9_classI_Rep2	2	531.816650390625	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.71192	1	13964	13964		29.15	1.2673	1	166960			53753	6119	44446	44482	58483	58483					0.09498308748334239
SLGIPVNHLI	10	Unmodified	_SLGIPVNHLI_					0	0	0		ENSG00000161055|ENST00000292641|SCGB3A1;ENST00000512120.1_1_5:180017233-180018052:-|nuORF	ENSG00000161055|ENST00000292641|SCGB3A1	ENSG00000161055|ENST00000292641|SCGB3A1	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8157958984375	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.45225	3	11568	11495;11568;11666		60.972	10.947	1	178650			53754	6119	44446	44482	58484;58485;58486	58485					0.09498308748334239
SLGIPYHIV	9	Unmodified	_SLGIPYHIV_					0	0	0		ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.7890930175781	2	499.78711	997.559667	-1.634	-0.00081666	-1.593	-0.00079617	-3.227	-0.0016128	499.78663317143213	118.74	1.2488	117.39	117.05	118.3	-1.3444					44	23	4	0	0	0	0.42057	1	11181	11181		50.025	0.48849	1	240830			53755	1067	44447	44483	58487	58487					0.060789483112330345
SLGLSVIAAV	10	Unmodified	_SLGLSVIAAV_					0	0	0			REV__nc|ENSG00000067842|Q16720-8|ATP2B3	REV__nc|ENSG00000067842|Q16720-8|ATP2B3	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.2209777832031	2	465.286943	928.559333	-0.77629	-0.0003612	1.8104	0.00084236	1.0341	0.00048116	465.28737419554517	50.087	0.43344	50.087	49.768	50.201	0					13	9	2	0	0	0	0.027056	1	3780	3780		27.882	10.517	1	195150	+		53756	16842	44448	44484	58488	58488					0.09219528591358994
SLGPAPRRRP	10	Unmodified	_SLGPAPRRRP_					0	0	0			REV__ENST00000609519.5_1_19:15509475-15509532:-|nuORF	REV__ENST00000609519.5_1_19:15509475-15509532:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8301391601562	2	553.830706	1105.64686	-0.8401	-0.00046527	-0.49633	-0.00027488	-1.3364	-0.00074015	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.83261	1	14138	14138		14.865	0	1	245610	+		53757	28101	44449	44485	58489	58489					0.09826167305504896
SLGQGINEL	9	Unmodified	_SLGQGINEL_					0	0	0		ENSG00000162777|ENST00000357640|DENND2D;nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENST00000468692.1_1_1:111730229-111731929:-|nuORF	ENSG00000162777|ENST00000357640|DENND2D	ENSG00000162777|ENST00000357640|DENND2D	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.75018310546875	2	465.748182	929.481811	-0.24005	-0.0001118	-0.53885	-0.00025097	-0.7789	-0.00036277	465.7479479889339	58.375	1.0543	54.983	54.6	55.655	-3.392					53	20	4	0	0	0	0.33652	1	3844	3844		58.782	0.97068	1	222800			53758	6233	44450	44486	58490	58490					0.014248906551870277
SLGQGINEL	9	Unmodified	_SLGQGINEL_					0	0	0		ENSG00000162777|ENST00000357640|DENND2D;nc|ENSG00000162777|Q9H6A0-2|DENND2D;ENST00000468692.1_1_1:111730229-111731929:-|nuORF	ENSG00000162777|ENST00000357640|DENND2D	ENSG00000162777|ENST00000357640|DENND2D	MULTI-MATCH	OvCa9_classI_Rep2	2		2	465.748182	929.481811	-0.62581	-0.00029147	0.55571	0.00025882	-0.070094	-3.2646E-05	465.74836217804915	57.916	0.80485	55.124	54.873	55.677	-2.7921	0.070691	0.00051981	NaN	58.782	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41786			53759	6233	44450	44486							0.014248906551870277
SLGRAAFRPR	10	Unmodified	_SLGRAAFRPR_					0	0	0		ENST00000592299.5_2_17:74380804-74380843:+|nuORF	ENST00000592299.5_2_17:74380804-74380843:+|nuORF	ENST00000592299.5_2_17:74380804-74380843:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.8458862304688	2	565.830706	1129.64686	-0.63309	-0.00035822	-0.72379	-0.00040954	-1.3569	-0.00076776	565.8302900353594	28.016	0.19961	28.016	27.891	28.091	0					6	3	2	0	0	0	0.026803	1	868	868		40.058	10.909	1	13467			53760	14133	44451	44487	58491	58491					0.08722167305495532
SLGRFEITV	9	Unmodified	_SLGRFEITV_					0	0	0		ENSG00000070718|ENST00000396926|AP3M2	ENSG00000070718|ENST00000396926|AP3M2	ENSG00000070718|ENST00000396926|AP3M2	MULTI-MSMS	OvCa99_classI_Rep5	1	511.2890319824219	2	511.287474	1020.5604	0.14382	7.3532E-05	0.70147	0.00035865	0.84529	0.00043218	511.28768130781924	105.35	0.65849	105.35	105.04	105.7	0					31	14	3	0	0	0	0.42576	1	11827	11827		49.536	5.1589	1	1443100			53761	1431	44452	44488	58492	58492					0.05093742960286818
SLGRHLLIHSE	11	Unmodified	_SLGRHLLIHSE_					0	0	0		ENST00000566987.5_1_16:71893923-71901814:-|nuORF;nc|ENSG00000102984|O75541-2|ZNF821;ENSG00000102984|ENST00000425432|ZNF821	ENST00000566987.5_1_16:71893923-71901814:-|nuORF	ENST00000566987.5_1_16:71893923-71901814:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	631.3572387695312	2	631.354211	1260.69387	-0.86892	-0.0005486	1.1001	0.00069455	0.23118	0.00014595	631.3548552496973	66.121	0.9747	62.631	62.37	63.345	-3.4896					55	19	4	0	0	0	0.68868	1	4804	4804		30.569	1.3988	1	620810			53762	2273	44453	44489	58493	58493					0.07394982066011835
SLGRQVVEP	9	Unmodified	_SLGRQVVEP_					0	0	0			REV__sp|P16736|HELI_HCMVADNAreplicationhelicaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=HELIPE=3SV=1	REV__sp|P16736|HELI_HCMVADNAreplicationhelicaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=HELIPE=3SV=1	MSMS	OvCa99_classI_Rep5	1	492.7774658203125	2	492.777274	983.539994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	41.81	1	41.81	41.31	42.31	0								0	0	0	0.13464	1	2640	2640		66.429	0	1		+		53763	29408	44454	44490	58494	58494					0.04756572300482276
SLGSDPSHSN	10	Unmodified	_SLGSDPSHSN_					0	0	0		ENSG00000106246|ENST00000292478|PTCD1	ENSG00000106246|ENST00000292478|PTCD1	ENSG00000106246|ENST00000292478|PTCD1	MULTI-MSMS	OvCa99_classI_Rep5	1	500.7173767089844	2	500.720153	999.425752	-0.58213	-0.00029148	-2.0798	-0.0010414	-2.6619	-0.0013329	500.7189261253765	39.568	7.3122	39.568	38.972	46.284	0					289	166	3	0	0	0	0.72142	1	2426	2426		28.081	1.0342	1	1705100			53764	2536	44455	44491	58495	58495					-0.07398362252274637
SLGSVNIGLP	10	Unmodified	_SLGSVNIGLP_					0	0	0			REV__ENST00000576544.5_1_17:79477316-79477516:-|nuORF	REV__ENST00000576544.5_1_17:79477316-79477516:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.93609619140625	2	478.7742	955.533846	-0.59537	-0.00028505	1.3766	0.0006591	0.78128	0.00037406	478.77425993373924	71.024	0.82294	67.567	67.251	68.074	-3.4563					24	16	2	0	0	0	0.026822	1	5449	5449		16.473	0	1	26350	+		53765	27786	44456	44492	58496	58496					0.054300540689382615
SLGTQQHEL	9	Unmodified	_SLGTQQHEL_					0	0	0			REV__ENSG00000248905|ENST00000616417|FMN1	REV__ENSG00000248905|ENST00000616417|FMN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.27880859375	2	506.756538	1011.49852	-0.098375	-4.9852E-05	0.087852	4.452E-05	-0.010523	-5.3325E-06	506.7560294364545	61.242	0.81981	57.812	57.544	58.364	-3.43					25	16	2	0	0	0	0.027295	1	4168	4168		74.255	13.961	1	165960	+		53766	23486	44457	44493	58497	58497					-0.006766084588548438
SLGVLYLQY	9	Unmodified	_SLGVLYLQY_					0	0	0		ENSG00000120549|ENST00000376454|KIAA1217;KIAA1217|p.V1115Sfs*19|1|0.06|ENSG00000120549|chr10:24533166-24533166|G/-|frameshift_variant;nc|ENSG00000120549|Q5T5P2-9|KIAA1217;nc|ENSG00000120549|Q5T5P2-2|KIAA1217;nc|ENSG00000120549|Q5T5P2-7|KIAA1217;nc|ENSG00000120549|Q5T5P2-10|KIAA1217	ENSG00000120549|ENST00000376454|KIAA1217	ENSG00000120549|ENST00000376454|KIAA1217	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.2913818359375	2	528.292225	1054.5699	-1.7523	-0.00092575	0.95014	0.00050195	-0.80221	-0.0004238	528.2921601924587	124.51	1.3878	123.12	122.52	123.91	-1.3908					38	26	2	0	0	0	0.22961	1	11810	11810		71.296	1.6681	1	69531			53767	3435	44458	44494	58498	58498					0.04479511245813228
SLGVQKRLE	9	Unmodified	_SLGVQKRLE_					0	0	0			REV__tr|A0A553SIB1|A0A553SIB1_NIACIXREfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_14500PE=4SV=1	REV__tr|A0A553SIB1|A0A553SIB1_NIACIXREfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_14500PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.7861938476562	2	515.306198	1028.59784	0.18193	9.3749E-05	-0.36179	-0.00018643	-0.17986	-9.2683E-05	515.3057903686345	78.475	1.0019	76.735	76.459	77.46	-1.7398					35	19	2	0	0	0	0.027461	1	6531	6531		25.574	0	1	28219	+		53768	29879	44459	44495	58499	58499					0.08468834225891442
SLGVSAAVAAR	11	Unmodified	_SLGVSAAVAAR_					0	0	0			REV__ENSG00000196449|ENST00000373044|YRDC	REV__ENSG00000196449|ENST00000373044|YRDC	MULTI-MSMS	OvCa99_classI_Rep5	1	501.2903747558594	2	501.290548	1000.56654	-0.33228	-0.00016657	-0.43348	-0.0002173	-0.76576	-0.00038387	501.2903358073717	35.788	0.55293	35.788	35.566	36.119	0					16	11	2	0	0	0	0.48812	1	1832	1832		54.722	10.606	1	610810	+		53769	22827	44460	44496	58500	58500					0.06628261191792717
SLGWEVAPS	9	Unmodified	_SLGWEVAPS_					0	0	0		ENSG00000183560|ENST00000687084|IZUMO1R	ENSG00000183560|ENST00000687084|IZUMO1R	ENSG00000183560|ENST00000687084|IZUMO1R	MULTI-SECPEP	OvCa9_classI_Rep2	2	472.27642822265625	2	473.23745	944.460347	-1.5206	-0.00071959	2.2268	0.0010538	0.70623	0.00033421	473.2383357494237	84.91	1.0524	83.364	82.693	83.745	-1.5462					36	20	2	0	0	0	0.027448	1	7351	7351		27.882	1.1893	1	15535			53770	8085	44461	44497	58501	58501					-0.014104943735219422
SLGYTTLSK	9	Unmodified	_SLGYTTLSK_					0	0	0			REV__ENSG00000172071|ENST00000303236|EIF2AK3	REV__ENSG00000172071|ENST00000303236|EIF2AK3	MULTI-MSMS	OvCa9_classI_Rep2	2	485.2651672363281	2	485.266207	968.517862	0.5716	0.00027738	-0.71238	-0.00034569	-0.14078	-6.8317E-05	485.265720307919	71.372	2.094	68.865	68.281	70.375	-2.5071					105	39	4	0	0	0	0.35444	1	5731	5731		56.721	5.3856	1	647640	+		53771	21673	44462	44498	58502	58502					0.0323434783203993
SLHDVVVIS	9	Unmodified	_SLHDVVVIS_					0	0	0			REV__ENSG00000198908|ENST00000457056|GPRASP3	REV__ENSG00000198908|ENST00000457056|GPRASP3	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.7757873535156	2	484.7742	967.533846	-0.90859	-0.00044046	0.24853	0.00012048	-0.66007	-0.00031998	484.77432100940536	92.678	2.6189	90.17	89.602	92.221	-2.5072					128	53	4	0	0	0	0.16524	1	8145	8145		82.305	5.4584	1	5506400	+		53772	23091	44463	44499	58503	58503					0.048780540689676855
SLHFMEATI	9	Unmodified	_SLHFMEATI_					0	0	0			REV__ENSG00000115616|ENST00000233969|SLC9A2	REV__ENSG00000115616|ENST00000233969|SLC9A2	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2867431640625	2	524.760235	1047.50592	1.742	0.00091412	-2.265	-0.0011886	-0.52298	-0.00027444	524.7589276905996	77.359	0.71246	77.359	77.044	77.757	0					28	16	2	0	0	0	0.027462	1	7817	7817		20.947	5.3051	1	1344700	+		53773	18260	44464	44500	58504	58504					-0.015935921828031496
SLHLFHISTG	10	Unmodified	_SLHLFHISTG_					0	0	0		ENSG00000101745|ENST00000262126|ANKRD12;nc|ENSG00000101745|Q6UB98-2|ANKRD12	ENSG00000101745|ENST00000262126|ANKRD12	ENSG00000101745|ENST00000262126|ANKRD12	MULTI-MSMS	OvCa9_classI_Rep4_	4	556.2965698242188	2	556.298373	1110.58219	-0.88867	-0.00049436	-1.365	-0.00075934	-2.2537	-0.0012537	556.297489303825	146.66	1.1662	145.22	144.86	146.02	-1.4357					51	22	3	0	0	0	0.67931	1	14399	14399		32.812	9.7699	1	134020			53774	2197	44465	44501	58505	58505					0.031325477088330445
SLHLSKAKI	9	Unmodified	_SLHLSKAKI_					0	0	0		ENSG00000123131|ENST00000379341|PRDX4	ENSG00000123131|ENST00000379341|PRDX4	ENSG00000123131|ENST00000379341|PRDX4	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.1951904296875	2	498.813659	995.612765	-0.42784	-0.00021341	-0.081021	-4.0414E-05	-0.50886	-0.00025382	498.8134378497861	48.873	0.62012	48.873	48.585	49.206	0					30	13	3	0	0	0	0.027418	1	3658	3658		49.442	20.271	1	1353100			53775	3574	44466	44502	58506	58506					0.114783260938907
SLHPLQVI	8	Unmodified	_SLHPLQVI_					0	0	0			REV__ENSG00000156564|ENST00000338305|LRFN2	REV__ENSG00000156564|ENST00000338305|LRFN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	453.7754211425781	2	453.774003	905.533452	0.67607	0.00030678	-0.59452	-0.00026978	0.081553	3.7007E-05	453.7735784647544	57.117	1.222	53.772	53.425	54.647	-3.3449					32	23	2	0	0	0	0.65062	1	3693	3693		53.351	0	1	329180	+		53776	20487	44467	44503	58507	58507					0.076906791397505
SLHPLQVI	8	Unmodified	_SLHPLQVI_					0	0	0			REV__ENSG00000156564|ENST00000338305|LRFN2	REV__ENSG00000156564|ENST00000338305|LRFN2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	453.774003	905.533452	0.89451	0.0004059	-0.84364	-0.00038282	0.050864	2.3081E-05	453.773342976912	56.466	1.7348	53.663	53.126	54.861	-2.804	-0.054836	-9.4463E-05	NaN	53.351	69	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157280	+		53777	20487	44467	44503							0.076906791397505
SLHPLQVI	8	Unmodified	_SLHPLQVI_					0	0	0			REV__ENSG00000156564|ENST00000338305|LRFN2	REV__ENSG00000156564|ENST00000338305|LRFN2	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	453.774003	905.533452	0.67607	0.00030678	-0.59452	-0.00026978	0.081553	3.7007E-05	453.7735784647544	57.117	1.222	53.772	53.425	54.647	-3.3449	0.054836	0.00013163	NaN	53.351	32	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	329180	+		53778	20487	44467	44503							0.076906791397505
SLHQPWRQYMT	11	Unmodified	_SLHQPWRQYMT_					0	0	0		MYCBPAP|p.L608P|1|0.09|ENSG00000136449|chr17:50524935-50524935|T/C|missense_variant	MYCBPAP|p.L608P|1|0.09|ENSG00000136449|chr17:50524935-50524935|T/C|missense_variant	MYCBPAP|p.L608P|1|0.09|ENSG00000136449|chr17:50524935-50524935|T/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	483.2919921875	3	482.903078	1445.6874	-0.2591	-0.00012512	3.5265	0.001703	3.2674	0.0015779	482.9044662202848	93.588	0.8886	92.42	92.105	92.994	-1.168					33	16	3	0	0	0	0.025995	1	8393	8393		23.378	4.1152	1	51343			53779	14847	44468	44504	58508	58508					-0.01761279157062745
SLHQPWRQYMT	11	Unmodified	_SLHQPWRQYMT_					0	0	0		MYCBPAP|p.L608P|1|0.09|ENSG00000136449|chr17:50524935-50524935|T/C|missense_variant	MYCBPAP|p.L608P|1|0.09|ENSG00000136449|chr17:50524935-50524935|T/C|missense_variant	MYCBPAP|p.L608P|1|0.09|ENSG00000136449|chr17:50524935-50524935|T/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.2930908203125	3	482.903078	1445.6874	-0.85866	-0.00041465	4.2885	0.0020709	3.4299	0.0016563	482.9049161662445	94.963	0.80125	92.494	92.31	93.111	-2.4685					37	15	3	0	0	0	0.026079	1	8384	8384		19.263	0	1	45881			53780	14847	44468	44504	58509	58509					-0.01761279157062745
SLHTASNSVL	10	Unmodified	_SLHTASNSVL_					0	0	0			REV__nc|ENSG00000273777|Q6UY09-4|CEACAM20	REV__nc|ENSG00000273777|Q6UY09-4|CEACAM20	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.7728881835938	2	514.772188	1027.52982	-0.92242	-0.00047484	0.85007	0.00043759	-0.07235	-3.7244E-05	514.7724622149109	70.371	1.3105	66.89	66.589	67.899	-3.4812					70	26	4	0	0	0	0.39172	1	5332	5332		69.628	8.6557	1	1471700	+		53781	15777	44469	44505	58510	58510					0.017159645752371944
SLHVRVPKGFV	11	Unmodified	_SLHVRVPKGFV_					0	0	0			REV__MATR3-UBE2D2|5|fusion	REV__MATR3-UBE2D2|5|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8694458007812	2	619.87204	1237.72953	-1.8762	-0.001163	-2.3116	-0.0014329	-4.1878	-0.0025959	619.8704234308321	147.79	3.8764	146.35	144.25	148.12	-1.4351					189	77	4	0	0	0	0.71191	1	14609	14609		25.574	1.0549	1	269210	+		53782	16518	44470	44506	58511	58511					0.1201706431365892
SLIAGSPLGI	10	Unmodified	_SLIAGSPLGI_					0	0	0			REV__nc|ENSG00000127463|Q8N766-4|EMC1	REV__nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	464.2799377441406	2	464.279118	926.543683	-1.0516	-0.00048825	1.0318	0.00047906	-0.019798	-9.192E-06	464.27939093077055	81.484	1.8959	78.773	78.445	80.341	-2.7106					61	38	3	0	0	0	0.28791	1	6712	6712		82.305	13.518	1	616820	+		53783	18815	44471	44507	58512	58512					0.07747242074310634
SLIATSTLN	9	Unmodified	_SLIATSTLN_					0	0	0		ENST00000550715.5_1_12:51442139-51450383:+|nuORF	ENST00000550715.5_1_12:51442139-51450383:+|nuORF	ENST00000550715.5_1_12:51442139-51450383:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	459.2701416015625	2	460.258382	918.502212	-0.62198	-0.00028627	2.2721	0.0010457	1.6501	0.00075947	460.2592395945971	46.86	0.87259	43.787	43.45	44.322	-3.0724					34	16	3	0	0	0	0.027462	1	2453	2453		27.882	0	1	199450			53784	13592	44472	44508	58513	58513					0.039700613149989294
SLIDKTTAA	9	Unmodified	_SLIDKTTAA_					0	0	0		ENSG00000124562|ENST00000244520|SNRPC;ENST00000474635.1_2_6:34730443-34740721:+|nuORF	ENSG00000124562|ENST00000244520|SNRPC	ENSG00000124562|ENST00000244520|SNRPC	MULTI-MSMS	OvCa99_classI_Rep5	1	460.2599792480469	2	460.258382	918.502212	0.10178	4.6844E-05	-0.31334	-0.00014422	-0.21156	-9.7371E-05	460.2581873337258	57.188	1.1513	57.188	56.875	58.027	0					72	26	5	0	0	0	0.14855	1	4798	4798		85.161	10.906	1	4876300			53785	3657	44473	44509	58514	58514					0.03970061314987561
SLIELLEDD	9	Unmodified	_SLIELLEDD_					0	0	0			REV__CACNA1D-DNAH1|1|fusion;REV__nc|ENSG00000114841|Q9P2D7-8|DNAH1	REV__CACNA1D-DNAH1|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.3015747070312	2	523.766237	1045.51792	0.87141	0.00045642	4.0245	0.0021079	4.896	0.0025643	524.2696755170726	85.182	0.48844	82.536	82.312	82.8	-2.6463					11	9	2	0	0	0	0.027462	1	7174	7174		17.365	5.8539	1	19387	+		53786	15726;18203	44474	44510	58515	58515					-0.0030169695860422507
SLIENGHLDV	10	Unmodified	_SLIENGHLDV_					0	0	0			REV__ENSG00000213588|ENST00000395064|ZBTB9	REV__ENSG00000213588|ENST00000395064|ZBTB9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.7970581054688	2	548.785296	1095.55604	-0.16914	-9.2819E-05	0.06715	3.6851E-05	-0.10199	-5.5969E-05	548.7852546597305	90.557	0.66519	87.982	87.7	88.365	-2.575					17	12	2	0	0	0	0.026714	1	7802	7802		42.864	7.246	1	20169	+		53787	23260	44475	44511	58516	58516					0.012082337467063553
SLIFLTFGIIL	11	Unmodified	_SLIFLTFGIIL_					0	0	0		tr|A0A7D6ZZK1|A0A7D6ZZK1_9CLOTCynX/NimTfamilyMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_20745PE=4SV=1	tr|A0A7D6ZZK1|A0A7D6ZZK1_9CLOTCynX/NimTfamilyMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_20745PE=4SV=1	tr|A0A7D6ZZK1|A0A7D6ZZK1_9CLOTCynX/NimTfamilyMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_20745PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	412.9267272949219	3	412.924925	1235.75295	-0.25244	-0.00010424	3.8201	0.0015774	3.5677	0.0014732	412.92657077571874	54.81	2.7333	51.996	51.573	54.306	-2.8139					157	54	5	0	0	0	0.52474	7	3766	3766;3778;3790;3796;3821;3833;3841		51.528	6.5056	1	2429000			53788	35964	44476	44512	58517;58518;58519;58520;58521;58522;58523	58517					0.14450065307619298
SLIFLTFGIIL	11	Unmodified	_SLIFLTFGIIL_					0	0	0		tr|A0A7D6ZZK1|A0A7D6ZZK1_9CLOTCynX/NimTfamilyMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_20745PE=4SV=1	tr|A0A7D6ZZK1|A0A7D6ZZK1_9CLOTCynX/NimTfamilyMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_20745PE=4SV=1	tr|A0A7D6ZZK1|A0A7D6ZZK1_9CLOTCynX/NimTfamilyMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_20745PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	412.92730712890625	3	412.924925	1235.75295	-0.45561	-0.00018813	3.6901	0.0015237	3.2345	0.0013356	412.926517070453	55.311	2.1325	52.016	51.648	53.781	-3.2944					136	41	5	0	0	0	0.66495	1	3508	3508		38.754	12.69	1	2139000			53789	35964	44476	44512	58524	58524					0.14450065307619298
SLIFNEIK	8	Unmodified	_SLIFNEIK_					0	0	0			REV__tr|A0A7D6ZUV4|A0A7D6ZUV4_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20075PE=4SV=1	REV__tr|A0A7D6ZUV4|A0A7D6ZUV4_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20075PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	482.2784423828125	2	482.279118	962.543683	0.066578	3.2109E-05	-0.52329	-0.00025237	-0.45671	-0.00022026	482.2788004272215	108.2	2.8648	107	106.64	109.5	-1.1978					126	54	4	0	0	0	0.099292	2	7733	7733;7746		143.89	5.2553	1	1495400	+		53790	32229	44477	44513	58525;58526	58525					0.06091242074319325
SLIFNEIK	8	Unmodified	_SLIFNEIK_					0	0	0			REV__tr|A0A7D6ZUV4|A0A7D6ZUV4_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20075PE=4SV=1	REV__tr|A0A7D6ZUV4|A0A7D6ZUV4_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20075PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.2800598144531	2	482.279118	962.543683	-1.2317	-0.000594	0.75122	0.0003623	-0.48043	-0.0002317	482.2794086008931	108.77	2.8599	107.05	106.72	109.58	-1.7256					132	54	5	0	0	0	0.057365	3	9974	9974;9999;10012		157.33	8.4052	1	1697700	+		53791	32229	44477	44513	58527;58528;58529	58527					0.06091242074319325
SLIGHLQTL	9	Unmodified	_SLIGHLQTL_					0	0	0		ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	MULTI-MSMS	OvCa99_classI_Rep5	1	491.2910461425781	2	491.290017	980.565481	1.8979	0.00093244	0.52751	0.00025916	2.4255	0.0011916	491.2901355082824	99.875	1.0775	99.875	99.652	100.73	0					53	25	3	0	0	0	0.059253	2	11046	11046;11078		113.41	14.037	1	4273900			53792	4665	44478	44514	58530;58531	58530					0.07442046822893644
SLIGHLQTL	9	Unmodified	_SLIGHLQTL_					0	0	0		ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	491.290017	980.565481	-0.51434	-0.00025269	0.18401	9.0401E-05	-0.33033	-0.00016229	491.2899120794422	100.93	0.64539	100.16	99.774	100.42	-0.76401	0.049475	-0.00023294	NaN	113.41	23	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63216			53793	4665	44478	44514							0.07442046822893644
SLIGHLQTL	9	Unmodified	_SLIGHLQTL_					0	0	0		ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	491.290017	980.565481	-1.1874	-0.00058338	0.99115	0.00048694	-0.19629	-9.6433E-05	491.29035794908265	101.69	0.73698	100.17	99.845	100.58	-1.5211	0.058716	0.00056014	NaN	113.41	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69806			53794	4665	44478	44514							0.07442046822893644
SLIGHLQTL	9	Unmodified	_SLIGHLQTL_					0	0	0		ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	ENSG00000138166|ENST00000369583|DUSP5	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	491.290017	980.565481	0.20938	0.00010287	-0.3351	-0.00016463	-0.12572	-6.1763E-05	491.28963202168904	102.45	1.1509	100.25	99.471	100.62	-2.1994	0.13143	-0.00074301	NaN	113.41	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65506			53795	4665	44478	44514							0.07442046822893644
SLIGKKGQQK	10	Unmodified	_SLIGKKGQQK_					0	0	0		nc|ENSG00000105968|Q71UI9-4|H2AZ2;ENSG00000164032|ENST00000296417|H2AZ1;ENSG00000105968|ENST00000308153|H2AZ2;ENST00000511319.5_1_4:100869621-100871200:-|nuORF;nc|ENSG00000105968|Q71UI9-3|H2AZ2	nc|ENSG00000105968|Q71UI9-4|H2AZ2	nc|ENSG00000105968|Q71UI9-4|H2AZ2	MSMS	OvCa9_classI_Rep2	2	543.8355102539062	2	543.835123	1085.65569	NaN	NaN	NaN	NaN	NaN	NaN	NaN	30.482	1	27.773	27.273	28.273	-2.7097								0	0	0	0.14861	1	835	835		39.253	4.1008	1				53796	2519	44479	44515	58532	58532					0.11629096151318663
SLIGLKSGGIV	11	Unmodified	_SLIGLKSGGIV_					0	0	0		tr|A0A7D6VYE8|A0A7D6VYE8_9CLOTNCS2familypermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16500PE=3SV=1	tr|A0A7D6VYE8|A0A7D6VYE8_9CLOTNCS2familypermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16500PE=3SV=1	tr|A0A7D6VYE8|A0A7D6VYE8_9CLOTNCS2familypermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16500PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.3312377929688	2	522.326599	1042.63865	0.27721	0.0001448	0.015998	8.3561E-06	0.29321	0.00015315	522.3265048886564	134.74	1.029	134.52	134.39	135.42	-0.22696					26	20	2	0	0	0	0.025909	1	13357	13357		34.173	5.023	1	48101			53797	35330	44480	44516	58533	58533					0.11903175545512568
SLIGVVRK	8	Unmodified	_SLIGVVRK_					0	0	0		nc|ENSG00000080224|Q9UF33|EPHA6;ENSG00000080224|ENST00000389672|EPHA6	nc|ENSG00000080224|Q9UF33|EPHA6	nc|ENSG00000080224|Q9UF33|EPHA6	MULTI-SECPEP	OvCa99_classI_Rep5	1	435.72772216796875	2	436.28982	870.565087	0.41817	0.00018244	-0.58346	-0.00025456	-0.16529	-7.2115E-05	436.2893853436852	47.834	0.74067	47.834	47.508	48.248	0					32	16	3	0	0	0	0.028476	1	3493	3493		27.882	0	1	717530			53798	1631	44481	44517	58534	58534					0.12462671893706556
SLIIAKLSR	9	Unmodified	_SLIIAKLSR_					0	0	0			REV__ENSG00000218819|ENST00000405799|TDRD15	REV__ENSG00000218819|ENST00000405799|TDRD15	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.759033203125	2	500.829309	999.644065	-1.2102	-0.00060613	1.357	0.00067962	0.14674	7.3494E-05	500.8300503910097	68.969	0.39836	66.349	66.217	66.615	-2.6203					10	7	2	0	0	0	0.027433	1	5467	5467		74.255	2.3776	1	11783	+		53799	23329	44482	44518	58535	58535					0.1442289912799879
SLIIAKLSR	9	Unmodified	_SLIIAKLSR_					0	0	0			REV__ENSG00000218819|ENST00000405799|TDRD15	REV__ENSG00000218819|ENST00000405799|TDRD15	MULTI-MATCH	OvCa99_classI_Rep5	1		2	500.829309	999.644065	-0.77414	-0.00038771	2.811	0.0014078	2.0368	0.0010201	500.83047457240355	66.269	0.23287	66.269	66.096	66.328	0	-0.10403	0.001403	NaN	74.255	10	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	513810	+		53800	23329	44482	44518							0.1442289912799879
SLIISEGTSVT	11	Unmodified	_SLIISEGTSVT_					0	0	0			REV__ENSG00000125900|ENST00000381623|SIRPD	REV__ENSG00000125900|ENST00000381623|SIRPD	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.8139038085938	2	553.800611	1105.58667	-0.085913	-4.7579E-05	2.3093	0.0012789	2.2234	0.0012313	553.8018857430624	71.593	0.44099	71.593	71.308	71.749	0					16	10	2	0	0	0	0.025257	1	6895	6895		36.447	12.924	1	514890	+		53801	18758	44483	44519	58536	58536					0.03809967341112497
SLIKIATEDE	10	Unmodified	_SLIKIATEDE_					0	0	0			REV__ENSG00000118997|ENST00000312428|DNAH7	REV__ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.8436279296875	2	559.800611	1117.58667	2.0567	0.0011514	1.5382	0.0008611	3.595	0.0020125	559.8008253690813	148.14	0.68797	148.14	147.93	148.62	0					23	13	3	0	0	0	0.026826	1	17386	17386		36.447	4.9169	1	56484	+		53802	18424	44484	44520	58537	58537					0.03257967341096446
SLIKQIPRI	9	Unmodified	_SLIKQIPRI_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENSG00000198755|ENST00000322203|RPL10A;ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	OvCa99_classI_Rep5	1	534.3519287109375	2	534.350409	1066.68626	2.0427	0.0010915	0.087634	4.6827E-05	2.1303	0.0011383	534.3502878809284	85.181	0.82417	85.181	84.8	85.624	0					42	19	3	0	0	0	0.10363	1	8928	8928		96.19	2.995	1	2331100			53803	8867;12397	44485	44521	58538	58538					0.1555887453635023
SLIKQIPRI	9	Unmodified	_SLIKQIPRI_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENSG00000198755|ENST00000322203|RPL10A;ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	534.350409	1066.68626	-0.24637	-0.00013165	-2.22	-0.0011862	-2.4664	-0.0013179	534.3492668472167	86.962	1.558	85.531	85.069	86.627	-1.4311	0.17488	-0.0020605	NaN	96.19	62	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166420			53804	8867;12397	44485	44521							0.1555887453635023
SLINEFKL	8	Unmodified	_SLINEFKL_					0	0	0		ENSG00000127362|ENST00000247879|TAS2R3	ENSG00000127362|ENST00000247879|TAS2R3	ENSG00000127362|ENST00000247879|TAS2R3	MULTI-MSMS	OvCa9_classI_Rep2	2	482.2786560058594	2	482.279118	962.543683	-0.15422	-7.4376E-05	-0.28862	-0.0001392	-0.44284	-0.00021357	482.27892050423463	107.25	2.5562	106.94	106.62	109.18	-0.30836					127	51	5	0	0	0	0.05163	6	10017	10017;10030;10049;10063;10067;10080		162.25	16.478	1	1468300			53805	3828	44486	44522	58539;58540;58541;58542;58543;58544	58539					0.06091242074330694
SLINEFKL	8	Unmodified	_SLINEFKL_					0	0	0		ENSG00000127362|ENST00000247879|TAS2R3	ENSG00000127362|ENST00000247879|TAS2R3	ENSG00000127362|ENST00000247879|TAS2R3	MULTI-MSMS	OvCa9_classI_Rep3	3	482.27850341796875	2	482.279118	962.543683	0.066578	3.2109E-05	-0.52329	-0.00025237	-0.45671	-0.00022026	482.2788004272215	108.2	2.8648	107	106.64	109.5	-1.1978					126	54	4	0	0	0	0.16223	3	7726	7704;7726;7739		131.03	10.41	1	1495400			53806	3828	44486	44522	58545;58546;58547	58546					0.06091242074330694
SLINEFKL	8	Unmodified	_SLINEFKL_					0	0	0		ENSG00000127362|ENST00000247879|TAS2R3	ENSG00000127362|ENST00000247879|TAS2R3	ENSG00000127362|ENST00000247879|TAS2R3	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.280029296875	2	482.279118	962.543683	-1.2317	-0.000594	0.75122	0.0003623	-0.48043	-0.0002317	482.2794086008931	108.77	2.8599	107.05	106.72	109.58	-1.7256					132	54	5	0	0	0	0.11987	4	9953	9953;9962;9986;10037		138.83	8.5712	1	1697700			53807	3828	44486	44522	58548;58549;58550;58551	58548					0.06091242074330694
SLINVGLISV	10	Unmodified	_SLINVGLISV_					0	0	0		nc|ENSG00000136938|Q92688-2|ANP32B;ENSG00000136938|ENST00000339399|ANP32B;ENST00000473205.1_1_9:100746884-100764563:+|nuORF;ENST00000564205.1_1_15:75614457-75614928:-|nuORF	nc|ENSG00000136938|Q92688-2|ANP32B	nc|ENSG00000136938|Q92688-2|ANP32B	MULTI-MSMS	OvCa99_classI_Rep5	1	507.8140869140625	2	507.813325	1013.6121	1.0485	0.00053242	0.53509	0.00027172	1.5836	0.00080415	507.8135294543622	154.5	1.202	154.5	154.12	155.33	0					63	23	4	0	0	0	0.0016064	2	18111	18091;18111		173.39	55.581	1	1105600			53808	4538	44487	44523	58552;58553	58553					0.1058348665419544
SLINVGLISV	10	Unmodified	_SLINVGLISV_					0	0	0		nc|ENSG00000136938|Q92688-2|ANP32B;ENSG00000136938|ENST00000339399|ANP32B;ENST00000473205.1_1_9:100746884-100764563:+|nuORF;ENST00000564205.1_1_15:75614457-75614928:-|nuORF	nc|ENSG00000136938|Q92688-2|ANP32B	nc|ENSG00000136938|Q92688-2|ANP32B	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.8136901855469	2	507.813325	1013.6121	-3.7776	-0.0019183	3.6163	0.0018364	-0.16133	-8.1927E-05	507.8150097852563	152.29	1.1068	150.85	150.6	151.71	-1.435					49	23	3	0	0	0	0.57535	2	15077	15064;15077		45.022	3.6151	1	90122			53809	4538	44487	44523	58554;58555	58555					0.1058348665419544
SLIPTSPQV	9	Unmodified	_SLIPTSPQV_					0	0	0		ENSG00000179134|ENST00000610417|SAMD4B	ENSG00000179134|ENST00000610417|SAMD4B	ENSG00000179134|ENST00000610417|SAMD4B	MULTI-MSMS	OvCa99_classI_Rep5	1	471.26947021484375	2	471.26875	940.522947	2.0554	0.00096863	-0.1294	-6.098E-05	1.926	0.00090765	471.26855033061304	108.64	0.69535	108.64	108.37	109.06	0					31	15	3	0	0	0	0.16264	1	12289	12289		82.75	5.9763	1	650650			53810	7805	44488	44524	58556	58556					0.05030651694664812
SLIPYSTL	8	Unmodified	_SLIPYSTL_					0	0	0		chr11:13967161-13982847|147|36.29|0.1|8.43|+|0|TE_info:MIRb,MIRb_dup141092,MIR,SINE,donor,-,13966994,13967161|None,SPON1|1	chr11:13967161-13982847|147|36.29|0.1|8.43|+|0|TE_info:MIRb,MIRb_dup141092,MIR,SINE,donor,-,13966994,13967161|None,SPON1|1	chr11:13967161-13982847|147|36.29|0.1|8.43|+|0|TE_info:MIRb,MIRb_dup141092,MIR,SINE,donor,-,13966994,13967161|None,SPON1|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	446.2703552246094	2	447.252569	892.490584	2.8152	0.0012591	3.228	0.0014437	6.0432	0.0027029	447.2548222230398	95.249	0.46172	95.249	94.949	95.41	0					18	10	3	0	0	0	0.028476	1	10350	10350		17.365	3.5896	1	170840			53811	284	44489	44525	58557	58557					0.04003864291678383
SLISKCKLT	9	Unmodified	_SLISKCKLT_					0	0	0		ENST00000304733.7_1_16:90071524-90072217:-|nuORF	ENST00000304733.7_1_16:90071524-90072217:-|nuORF	ENST00000304733.7_1_16:90071524-90072217:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.82196044921875	2	496.794078	991.573602	-1.203	-0.00059764	-2.9621	-0.0014716	-4.1651	-0.0020692	496.79228811340363	72.038	0.63531	68.582	68.412	69.047	-3.4563					17	12	2	0	0	0	0.027462	1	5567	5567		25.574	6.2141	1	36761			53812	10226	44490	44526	58558	58558					0.07747857748006481
SLISLKKEL	9	Unmodified	_SLISLKKEL_					0	0	0			REV__tr|A0A7D6VSX7|A0A7D6VSX7_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06930PE=3SV=1	REV__tr|A0A7D6VSX7|A0A7D6VSX7_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06930PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	515.8284912109375	2	515.828975	1029.6434	0.047341	2.442E-05	-0.33086	-0.00017066	-0.28352	-0.00014625	515.8287151259711	133.92	2.3165	132.79	132.47	134.79	-1.1226					129	46	5	0	0	0	0.37135	1	10877	10877		54.776	1.8396	1	885720	+		53813	31552	44491	44527	58559	58559					0.1297605968827611
SLISTYFHV	9	Unmodified	_SLISTYFHV_					0	0	0		ENST00000336838.10_1_2:55646279-55646603:-|nuORF	ENST00000336838.10_1_2:55646279-55646603:-|nuORF	ENST00000336838.10_1_2:55646279-55646603:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	533.782958984375	2	533.782025	1065.5495	1.0847	0.00057901	0.71511	0.00038171	1.7998	0.00096072	533.7822622796492	123.73	0.68072	123.73	123.42	124.1	0					24	14	2	0	0	0	0.12365	2	14259	14259;14291		90.777	31.995	1	892480			53814	10516	44492	44528	58560;58561	58560					0.019343405859899576
SLITDELIG	9	Unmodified	_SLITDELIG_					0	0	0		ENST00000261396.5_1_1:229577072-229577156:-|nuORF	ENST00000261396.5_1_1:229577072-229577156:-|nuORF	ENST00000261396.5_1_1:229577072-229577156:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	480.7663269042969	2	480.76604	959.517527	-1.3373	-0.00064294	2.5663	0.0012338	1.229	0.00059085	480.7671509238754	54.147	1.2965	51.333	50.825	52.122	-2.8139					48	25	2	0	0	0	0.44294	1	3715	3715		47.916	1.1492	1	272510			53815	9863	44493	44529	58562	58562					0.03614928112210691
SLITDKKKFA	10	Unmodified	_SLITDKKKFA_					0	0	0			REV__ENSG00000185010|ENST00000360256|F8	REV__ENSG00000185010|ENST00000360256|F8	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8432006835938	2	575.845156	1149.67576	-2.8608	-0.0016474	-0.58729	-0.00033819	-3.4481	-0.0019856	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.73378	1	14709	14709		26.693	1.1189	1	356230	+		53816	22469	44494	44530	58563	58563					0.10690847091291289
SLITLTAISK	10	Unmodified	_SLITLTAISK_					0	0	0		tr|A0A553SMQ2|A0A553SMQ2_NIACIcysteine-S-conjugatebeta-lyaseOS=NialliacirculansOX=1397GN=CEQ21_22870PE=3SV=1	tr|A0A553SMQ2|A0A553SMQ2_NIACIcysteine-S-conjugatebeta-lyaseOS=NialliacirculansOX=1397GN=CEQ21_22870PE=3SV=1	tr|A0A553SMQ2|A0A553SMQ2_NIACIcysteine-S-conjugatebeta-lyaseOS=NialliacirculansOX=1397GN=CEQ21_22870PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.8260498046875	2	523.826432	1045.63831	2.711	0.0014201	-2.8649	-0.0015007	-0.15389	-8.0611E-05	523.8247853028438	134.31	1.1882	132.79	132.34	133.53	-1.5257					49	23	3	0	0	0	0.44431	2	12967	12967;12999		62.107	15.574	1	57964			53817	33860	44495	44531	58564;58565	58564					0.11731755825644541
SLITLTAISK	10	Unmodified	_SLITLTAISK_					0	0	0		tr|A0A553SMQ2|A0A553SMQ2_NIACIcysteine-S-conjugatebeta-lyaseOS=NialliacirculansOX=1397GN=CEQ21_22870PE=3SV=1	tr|A0A553SMQ2|A0A553SMQ2_NIACIcysteine-S-conjugatebeta-lyaseOS=NialliacirculansOX=1397GN=CEQ21_22870PE=3SV=1	tr|A0A553SMQ2|A0A553SMQ2_NIACIcysteine-S-conjugatebeta-lyaseOS=NialliacirculansOX=1397GN=CEQ21_22870PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	523.826432	1045.63831	0.50968	0.00026698	-0.6153	-0.00032231	-0.10562	-5.5329E-05	523.8260155865166	132.86	1.1341	132.63	132.28	133.41	-0.22697	-0.10663	0.00052062	NaN	62.107	43	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72278			53818	33860	44495	44531							0.11731755825644541
SLITLTAISK	10	Unmodified	_SLITLTAISK_					0	0	0		tr|A0A553SMQ2|A0A553SMQ2_NIACIcysteine-S-conjugatebeta-lyaseOS=NialliacirculansOX=1397GN=CEQ21_22870PE=3SV=1	tr|A0A553SMQ2|A0A553SMQ2_NIACIcysteine-S-conjugatebeta-lyaseOS=NialliacirculansOX=1397GN=CEQ21_22870PE=3SV=1	tr|A0A553SMQ2|A0A553SMQ2_NIACIcysteine-S-conjugatebeta-lyaseOS=NialliacirculansOX=1397GN=CEQ21_22870PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	523.826432	1045.63831	-0.76509	-0.00040077	1.0131	0.00053069	0.24802	0.00012992	523.8267027353177	133.91	0.88809	132.79	132.47	133.36	-1.1226	0.05313	0.0022266	NaN	62.107	19	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17196			53819	33860	44495	44531							0.11731755825644541
SLITRLLEV	9	Unmodified	_SLITRLLEV_					0	0	0		ENSG00000213639|ENST00000395366|PPP1CB;ENST00000464273.1_1_2:28974903-28999853:+|nuORF;PPP1CB-PLB1|5|fusion;PPP1CB-PLB1|6|fusion;PPP1CB-PLB1|3|fusion;PPP1CB-PLB1|7|fusion;PPP1CB-PLB1|4|fusion;PPP1CB-PLB1|8|fusion	ENSG00000213639|ENST00000395366|PPP1CB;ENST00000464273.1_1_2:28974903-28999853:+|nuORF;PPP1CB-PLB1|5|fusion	ENSG00000213639|ENST00000395366|PPP1CB	MULTI-MSMS	OvCa99_classI_Rep5	1	522.3278198242188	2	522.326599	1042.63865	1.5386	0.00080365	0.51618	0.00026961	2.0548	0.0010733	522.326760076249	133.89	0.94173	133.89	133.49	134.43	0					57	19	4	0	0	0	0.094791	3	15584	15560;15584;15608		98.582	11.455	1	1923900			53820	9139;15516;12246	44496	44532	58566;58567;58568	58567					0.11903175545512568
SLIVRPSVL	9	Unmodified	_SLIVRPSVL_					0	0	0			REV__nc|ENSG00000161270|O60500-2|NPHS1	REV__nc|ENSG00000161270|O60500-2|NPHS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.3170166015625	2	492.316035	982.617516	-0.36395	-0.00017918	0.020264	9.9762E-06	-0.34368	-0.0001692	492.3159243507644	99.407	1.3843	97.082	96.795	98.179	-2.3253					64	26	3	0	0	0	0.27001	1	8877	8877		66.429	0	1	745510	+		53821	20694	44497	44533	58569	58569					0.12551210236654242
SLIWSYPAG	9	Unmodified	_SLIWSYPAG_					0	0	0		ENSG00000144015|ENST00000272395|TRIM43;ENSG00000144010|ENST00000639673|TRIM43B	ENSG00000144015|ENST00000272395|TRIM43	ENSG00000144015|ENST00000272395|TRIM43	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.27362060546875	2	497.255643	992.496732	-1.8043	-0.00089721	-1.2532	-0.00062318	-3.0576	-0.0015204	497.25476610728276	88.681	0.70718	86.078	85.629	86.336	-2.6027					30	13	3	0	0	0	0.027462	1	7545	7545		40.573	8.6178	1	56955			53822	5116	44498	44534	58570	58570					0.00018382523182935984
SLIYKIKKSG	10	Unmodified	_SLIYKIKKSG_					0	0	0			REV__ENSG00000150394|ENST00000577390|CDH8	REV__ENSG00000150394|ENST00000577390|CDH8	MULTI-MSMS	OvCa9_classI_Rep4_	4	568.852783203125	2	568.855524	1135.69649	-6.0828	-0.0034602	2.2546	0.0012825	-3.8282	-0.0021777	568.856661515311	161.9	1.6548	160.28	159.93	161.59	-1.6239					133	43	5	0	0	0	0.6104	1	15978	15978		40.778	9.2484	1	804000	+		53823	20188	44499	44535	58571	58571					0.1340743747093711
SLKAVHKFVD	10	Unmodified	_SLKAVHKFVD_					0	0	0		ENSG00000153404|ENST00000637938|PLEKHG4B	ENSG00000153404|ENST00000637938|PLEKHG4B	ENSG00000153404|ENST00000637938|PLEKHG4B	MULTI-MSMS	OvCa9_classI_Rep2	2	572.3269653320312	2	572.329673	1142.64479	-1.7804	-0.001019	-1.9174	-0.0010974	-3.6978	-0.0021164	572.3282994633946	39.094	1.3403	36.384	36.161	37.501	-2.7097					57	26	4	0	0	0	0.72142	1	1876	1876		28.081	2.5074	1	239310			53824	5680	44500	44536	58572	58572					0.07917693777039858
SLKELSEIL	9	Unmodified	_SLKELSEIL_					0	0	0		tr|A0A7D6ZZ76|A0A7D6ZZ76_9CLOTtRNA(Adenosine(37)-N6)-threonylcarbamoyltransferasecomplexdimerizationsubunittype1TsaBOS=ClostridiumintestinaleOX=36845GN=tsaBPE=4SV=1	tr|A0A7D6ZZ76|A0A7D6ZZ76_9CLOTtRNA(Adenosine(37)-N6)-threonylcarbamoyltransferasecomplexdimerizationsubunittype1TsaBOS=ClostridiumintestinaleOX=36845GN=tsaBPE=4SV=1	tr|A0A7D6ZZ76|A0A7D6ZZ76_9CLOTtRNA(Adenosine(37)-N6)-threonylcarbamoyltransferasecomplexdimerizationsubunittype1TsaBOS=ClostridiumintestinaleOX=36845GN=tsaBPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7936401367188	2	516.30279	1030.59103	-1.1211	-0.00057884	-3.7645	-0.0019436	-4.8856	-0.0025225	516.3006524063061	92.878	0.90313	90.371	90.01	90.913	-2.5072					30	17	2	0	0	0	0.027137	1	8122	8122		87.696	15.819	1	70793			53825	35947	44501	44537	58573	58573					0.07695476554658853
SLKELSEIL	9	Unmodified	_SLKELSEIL_					0	0	0		tr|A0A7D6ZZ76|A0A7D6ZZ76_9CLOTtRNA(Adenosine(37)-N6)-threonylcarbamoyltransferasecomplexdimerizationsubunittype1TsaBOS=ClostridiumintestinaleOX=36845GN=tsaBPE=4SV=1	tr|A0A7D6ZZ76|A0A7D6ZZ76_9CLOTtRNA(Adenosine(37)-N6)-threonylcarbamoyltransferasecomplexdimerizationsubunittype1TsaBOS=ClostridiumintestinaleOX=36845GN=tsaBPE=4SV=1	tr|A0A7D6ZZ76|A0A7D6ZZ76_9CLOTtRNA(Adenosine(37)-N6)-threonylcarbamoyltransferasecomplexdimerizationsubunittype1TsaBOS=ClostridiumintestinaleOX=36845GN=tsaBPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	516.30279	1030.59103	1.1484	0.00059291	-5.801	-0.0029951	-4.6526	-0.0024021	516.2994568279665	91.694	0.84432	90.458	89.954	90.799	-1.2355	0.043715	-0.00097294	NaN	87.696	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65759			53826	35947	44501	44537							0.07695476554658853
SLKEVVEVI	9	Unmodified	_SLKEVVEVI_					0	0	0			REV__NINL|p.R1202Efs*7|1|0.18|ENSG00000101004|chr20:25461615-25461615|A/-|frameshift_variant	REV__NINL|p.R1202Efs*7|1|0.18|ENSG00000101004|chr20:25461615-25461615|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	508.30694580078125	2	508.305332	1014.59611	0.033387	1.6971E-05	-0.47582	-0.00024186	-0.44243	-0.00022489	508.30640264937637	96.576	1.1814	95.617	95.381	96.562	-0.95857					82	23	5	0	0	0	0.094616	2	8723	8715;8723		98.629	7.69	1	967280	+		53827	17466	44502	44538	58574;58575	58575					0.08939780417290422
SLKFYNEKYRF	11	Unmodified	_SLKFYNEKYRF_					0	0	0			REV__ENST00000541179.5_1_13:38136807-38136960:-|nuORF	REV__ENST00000541179.5_1_13:38136807-38136960:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.9450988769531	3	498.92951	1493.7667	1.7575	0.00087685	-1.9826	-0.0009892	-0.22518	-0.00011235	498.9278242119042	78.739	0.25105	78.739	78.54	78.791	0					9	5	2	0	0	0	0.026101	1	7982	7982		33.039	22.041	1	284330	+		53828	27365	44503	44539	58576	58576					0.03956691068742657
SLKGKRKF	8	Unmodified	_SLKGKRKF_					0	0	0			REV__nc|ENSG00000112419|O75167-5|PHACTR2	REV__nc|ENSG00000112419|O75167-5|PHACTR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.2428894042969	2	482.308544	962.602535	2.0445	0.00098609	0.28194	0.00013598	2.3265	0.0011221	482.30853918291365	87.143	1.2416	87.143	86.888	88.13	0					57	29	3	0	0	0	0.028476	1	9236	9236		35.201	22.994	1	1891600	+		53829	18100	44504	44540	58577	58577					0.11973763159312512
SLKHLWVPL	9	Unmodified	_SLKHLWVPL_					0	0	0			REV__nc|ENSG00000100258|Q9BU23-3|LMF2	REV__nc|ENSG00000100258|Q9BU23-3|LMF2	MULTI-SECPEP	OvCa9_classI_Rep3	3	547.74609375	2	546.831852	1091.64915	-0.0046916	-2.5655E-06	-2.4485	-0.0013389	-2.4532	-0.0013415	547.3331595286742	106.46	0.46883	105.2	104.85	105.32	-1.267					10	8	2	0	0	0	0.027462	1	7488	7488		38.806	9.6361	1	8331.8	+		53830	17388	44505	44541	58578	58578					0.1069920299057685
SLKIGLPK	8	Unmodified	_SLKIGLPK_					0	0	0			REV__nc|ENSG00000115392|Q9NW38-2|FANCL	REV__nc|ENSG00000115392|Q9NW38-2|FANCL	MULTI-MSMS	OvCa9_classI_Rep2	2	428.28643798828125	2	428.286746	854.558939	-0.73284	-0.00031386	0.96879	0.00041492	0.23595	0.00010106	428.2870129067913	105	1.3901	104.51	104.21	105.6	-0.48513					76	27	4	0	0	0	0.70469	1	9750	9750		42.396	5.237	1	441820	+		53831	18241	44506	44542	58579	58579					0.12584153662169228
SLKIKDLF	8	Unmodified	_SLKIKDLF_					0	0	0		tr|A0A7D6VPU3|A0A7D6VPU3_9CLOTYibE/FfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18165PE=4SV=1	tr|A0A7D6VPU3|A0A7D6VPU3_9CLOTYibE/FfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18165PE=4SV=1	tr|A0A7D6VPU3|A0A7D6VPU3_9CLOTYibE/FfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18165PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.2428894042969	2	482.29731	962.580068	1.8955	0.00091422	0.80487	0.00038819	2.7004	0.0013024	482.29751493330633	87.264	0.53324	87.264	87.013	87.546	0					17	12	2	0	0	0	0.028476	1	9236	9236		30.504	3.7075	1	361160			53832	34799	44507	44543	58580	58580					0.09728118971020194
SLKKELVMPE	10	Unmodified	_SLKKELVMPE_					0	0	0		ENSG00000282815|ENST00000695840|TEX13C	ENSG00000282815|ENST00000695840|TEX13C	ENSG00000282815|ENST00000695840|TEX13C	MULTI-SECPEP	OvCa9_classI_Rep4_	4	588.298583984375	2	587.331024	1172.6475	-2.6939	-0.0015822	2.9411	0.0017274	0.24717	0.00014517	587.3330903060877	88.358	0.75788	85.756	85.327	86.085	-2.6027					19	14	2	0	0	0	0.026714	1	7498	7498		28.081	0	1	28875			53833	9607	44508	44544	58581	58581					0.06807781119687206
SLKKPQVIP	9	Unmodified	_SLKKPQVIP_					0	0	0			REV__ENST00000456760.1_1_9:125448634-125449186:+|nuORF	REV__ENST00000456760.1_1_9:125448634-125449186:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.3421630859375	2	505.32386	1008.63317	2.9213	0.0014762	-3.278	-0.0016565	-0.35672	-0.00018026	505.32217137829366	133.94	1.5796	132.42	132.05	133.63	-1.5257					92	31	4	0	0	0	0.027462	1	13073	13073		29.15	0	1	340380	+		53834	26034	44509	44545	58582	58582					0.12919496753693238
SLKKRLPE	8	Unmodified	_SLKKRLPE_					0	0	0		ENSG00000108021|ENST00000695737|TASOR2;nc|ENSG00000108021|Q5VWN6-2|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	MULTI-SECPEP	OvCa9_classI_Rep2	2	485.2657470703125	2	485.805834	969.597115	0.60657	0.00029468	-1.5936	-0.00077418	-0.98702	-0.0004795	485.80516908811	71.444	0.73309	68.936	68.752	69.485	-2.5071					16	13	2	0	0	0	0.028476	1	5754	5754		21.96	0	1	14378			53835	2634	44510	44546	58583	58583					0.11110039576840336
SLKKRVSDAN	10	Unmodified	_SLKKRVSDAN_					0	0	0		nc|ENSG00000144406|Q8N2C7-7|UNC80;nc|ENSG00000144406|Q8N2C7|UNC80;ENSG00000144406|ENST00000673920|UNC80;nc|ENSG00000144406|Q8N2C7-2|UNC80;nc|ENSG00000144406|Q8N2C7-4|UNC80;ENST00000489023.5_1_2:210693994-210832362:+|nuORF	nc|ENSG00000144406|Q8N2C7-7|UNC80	nc|ENSG00000144406|Q8N2C7-7|UNC80	MULTI-MSMS	OvCa9_classI_Rep2	2	559.3216552734375	2	559.319837	1116.62512	0.41481	0.00023201	3.2956	0.0018433	3.7105	0.0020753	559.3203026302189	31.753	0.79087	29.043	28.789	29.58	-2.7097					35	15	3	0	0	0	0.79213	1	1015	1015		19.997	0.6368	1	39216			53836	5149	44511	44547	58584	58584					0.07147317766271044
SLKLTKIPE	9	Unmodified	_SLKLTKIPE_					0	0	0		nc|ENSG00000187122|O75093-2|SLIT1;ENSG00000187122|ENST00000266058|SLIT1	nc|ENSG00000187122|O75093-2|SLIT1	nc|ENSG00000187122|O75093-2|SLIT1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.3092651367188	2	514.82115	1027.62775	-1.2176	-0.00062684	1.22	0.00062807	0.0024062	1.2387E-06	514.8216696248631	99.977	1.1252	97.652	97.366	98.491	-2.3253					51	21	3	0	0	0	0.027462	1	8915	8915		29.17	4.6509	1	177970			53837	8388	44512	44548	58585	58585					0.1150377317121638
SLKLVLLVL	9	Unmodified	_SLKLVLLVL_					0	0	0		ENST00000532483.5_1_14:73572990-73578268:+|nuORF	ENST00000532483.5_1_14:73572990-73578268:+|nuORF	ENST00000532483.5_1_14:73572990-73578268:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.25244140625	2	499.354628	996.694704	-0.48133	-0.00024035	-2.9031	-0.0014497	-3.3844	-0.00169	499.3531246333253	39.037	0.36029	39.037	38.882	39.242	0					14	7	3	0	0	0	0.027462	1	2249	2249		24.203	0	1	96253			53838	13324	44513	44549	58586	58586					0.19622428452976237
SLKMDRKVW	9	Unmodified	_SLKMDRKVW_					0	0	0		nc|ENSG00000186635|Q96P48-3|ARAP1;ENSG00000186635|ENST00000393609|ARAP1;nc|ENSG00000186635|Q96P48-2|ARAP1;nc|ENSG00000186635|Q96P48-4|ARAP1;nc|ENSG00000186635|Q96P48-1|ARAP1;ENST00000465814.5_1_11:72407932-72423670:-|nuORF;nc|ENSG00000186635|Q96P48-7|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	nc|ENSG00000186635|Q96P48-3|ARAP1	MULTI-MSMS	OvCa9_classI_Rep3	3	581.821044921875	2	581.823701	1161.63285	-2.3113	-0.0013447	-1.9557	-0.0011379	-4.267	-0.0024826	581.8225826279196	136.77	1.3143	135.69	135.36	136.68	-1.0858					56	26	3	0	0	0	0.56889	1	11117	11117		35.618	0	1	78530			53839	8350	44514	44550	58587	58587					0.0584975376220882
SLKMKGAGALL	11	Unmodified	_SLKMKGAGALL_					0	0	0			REV__ENST00000299824.5_1_20:37548082-37548337:+|nuORF	REV__ENST00000299824.5_1_20:37548082-37548337:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	543.8343505859375	2	544.828452	1087.64235	0.51963	0.00028311	-3.2642	-0.0017784	-2.7445	-0.0014953	544.826680534027	30.422	0.79009	27.712	27.31	28.1	-2.7097					23	15	2	0	0	0	0.025332	1	829	829		58.23	0	1	21004	+		53840	24225	44515	44551	58588	58588					0.10203522047731894
SLKPHINSV	9	Unmodified	_SLKPHINSV_					0	0	0			REV__ENSG00000066422|ENST00000312938|ZBTB11	REV__ENSG00000066422|ENST00000312938|ZBTB11	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.1951904296875	2	497.787641	993.56073	-0.4968	-0.0002473	-1.2026	-0.00059866	-1.6995	-0.00084597	497.78742836146336	49.186	0.17449	49.186	49.031	49.206	0					5	3	2	0	0	0	0.02741	1	3658	3658		42.396	0	1	86650	+		53841	16815	44516	44552	58589	58589					0.06369162680130103
SLKPRVVD	8	Unmodified	_SLKPRVVD_					0	0	0		CUL2|p.R669Efs*16|1|0.13|ENSG00000108094|chr10:35011950-35011950|A/-|frameshift_variant;ENSG00000108094|ENST00000374749|CUL2;nc|ENSG00000108094|Q13617-2|CUL2;ENST00000478044.1_1_10:35352986-35363196:-|nuORF	CUL2|p.R669Efs*16|1|0.13|ENSG00000108094|chr10:35011950-35011950|A/-|frameshift_variant	CUL2|p.R669Efs*16|1|0.13|ENSG00000108094|chr10:35011950-35011950|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	456.2873840332031	2	457.276909	912.539266	-0.94921	-0.00043405	1.0583	0.00048395	0.10913	4.99E-05	457.27729051028814	93.82	1.1699	91.859	91.577	92.747	-1.9617					44	22	4	0	0	0	0.028476	1	6001	6001		38.806	22.333	1	160360			53842	699	44517	44553	58590	58590					0.07949777651424483
SLKPRVVD	8	Unmodified	_SLKPRVVD_					0	0	0		CUL2|p.R669Efs*16|1|0.13|ENSG00000108094|chr10:35011950-35011950|A/-|frameshift_variant;ENSG00000108094|ENST00000374749|CUL2;nc|ENSG00000108094|Q13617-2|CUL2;ENST00000478044.1_1_10:35352986-35363196:-|nuORF	CUL2|p.R669Efs*16|1|0.13|ENSG00000108094|chr10:35011950-35011950|A/-|frameshift_variant	CUL2|p.R669Efs*16|1|0.13|ENSG00000108094|chr10:35011950-35011950|A/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	457.276909	912.539266	0.98733	0.00045148	-1.1423	-0.00052237	-0.15501	-7.0881E-05	457.27625345552366	93.211	1.2871	92.043	91.55	92.837	-1.168	0.063834	-0.0012069	NaN	38.806	39	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89889			53843	699	44517	44553							0.07949777651424483
SLKQSPLLPS	10	Unmodified	_SLKQSPLLPS_					0	0	0			REV__ENST00000272519.9_1_2:121051013-121051097:+|nuORF	REV__ENST00000272519.9_1_2:121051013-121051097:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.239990234375	2	535.316232	1068.61791	-0.94627	-0.00050655	-4.1383	-0.0022153	-5.0846	-0.0027219	535.8142196678115	98.477	1.3331	96.098	95.773	97.106	-2.3786					31	25	2	0	0	0	0.026849	1	8820	8820		32.812	0	1	52656	+		53844	24077	44518	44554	58591	58591					0.08634585165850694
SLKRAPKR	8	Unmodified	_SLKRAPKR_					0	0	0		ENST00000408953.3_1_5:159826852-159826912:-|nuORF	ENST00000408953.3_1_5:159826852-159826912:-|nuORF	ENST00000408953.3_1_5:159826852-159826912:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.29681396484375	2	478.311618	954.608683	-1.0817	-0.00051741	-2.8546	-0.0013654	-3.9363	-0.0018828	478.3105656647282	63.874	0.84145	61.13	60.79	61.632	-2.7444					39	15	3	0	0	0	0.028476	1	4818	4818		20.482	1.1219	1	64278			53845	11507	44519	44555	58592	58592					0.12956281390836466
SLKRLSVYLE	10	Unmodified	_SLKRLSVYLE_					0	0	0		ENSG00000179152|ENST00000342649|TCAIM;nc|ENSG00000179152|Q8N3R3-2|TCAIM	ENSG00000179152|ENST00000342649|TCAIM	ENSG00000179152|ENST00000342649|TCAIM	MULTI-SECPEP	OvCa99_classI_Rep5	1	605.2782592773438	2	604.355888	1206.69722	2.1431	0.0012952	-0.64061	-0.00038716	1.5025	0.00090806	604.3559213826337	118.38	0.60461	118.38	117.93	118.53	0					14	12	2	0	0	0	0.027001	1	13574	13574		16.473	0	1	52213			53846	7807	44520	44556	58593	58593					0.10214232119983535
SLKSQRGLAE	10	Unmodified	_SLKSQRGLAE_					0	0	0			REV__ENST00000312475.4_1_15:89009002-89010642:-|nuORF	REV__ENST00000312475.4_1_15:89009002-89010642:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	544.8080444335938	2	544.806562	1087.59857	-0.37112	-0.00020219	2.6293	0.0014324	2.2581	0.0012303	544.8076793315723	78.589	2.5947	76.237	75.253	77.848	-2.3527					128	51	4	0	0	0	0.42082	1	4193	4193		65.465	3.7741	1	2782000	+		53847	24357	44521	44557	58594	58594					0.05827628874953916
SLKTLTTLL	9	Unmodified	_SLKTLTTLL_					0	0	0		ENST00000486778.1_1_9:101546182-101546722:-|nuORF	ENST00000486778.1_1_9:101546182-101546722:-|nuORF	ENST00000486778.1_1_9:101546182-101546722:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	495.2982482910156	2	495.3157	988.616847	-0.57273	-0.00028368	-4.1147	-0.0020381	-4.6874	-0.0023217	495.31467047434273	88.965	0.24404	86.834	86.75	86.994	-2.1309					6	4	2	0	0	0	0.027418	1	5448	5448		68.787	8.4929	1	12576			53848	12628	44522	44558	58595	58595					0.12208370796952295
SLKTMYQI	8	Unmodified	_SLKTMYQI_					0	0	0		tr|A0A553SMF7|A0A553SMF7_NIACIBeta-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_22515PE=3SV=1	tr|A0A553SMF7|A0A553SMF7_NIACIBeta-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_22515PE=3SV=1	tr|A0A553SMF7|A0A553SMF7_NIACIBeta-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_22515PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	492.3116760253906	2	492.265153	982.515753	-0.41572	-0.00020464	0.22751	0.000112	-0.18821	-9.2647E-05	492.2652661520201	102.96	1.1015	101.44	101.1	102.2	-1.5211					40	20	4	0	0	0	0.028476	1	7148	7148		47.916	15.103	1	51896			53849	33825	44523	44559	58596	58596					0.023795958225719005
SLKVDKIHLSS	11	Unmodified	_SLKVDKIHLSS_					0	0	0			REV__nc|ENSG00000154654|O15394-2|NCAM2	REV__nc|ENSG00000154654|O15394-2|NCAM2	MULTI-SECPEP	OvCa9_classI_Rep3	3	409.58740234375	3	409.574955	1225.70304	2.0232	0.00082865	-0.99932	-0.00040929	1.0239	0.00041935	409.57438919140714	65.808	1.0163	62.862	62.503	63.519	-2.9459					45	19	3	0	0	0	0.025528	1	2712	2712		14.779	0	1	50965	+		53850	20391	44524	44560	58597	58597					0.09921330631664205
SLLAAAPSVL	10	Unmodified	_SLLAAAPSVL_					0	0	0			REV__nc|ENSG00000122420|P43088-6|PTGFR	REV__nc|ENSG00000122420|P43088-6|PTGFR	MULTI-MSMS	OvCa99_classI_Rep5	1	471.2880859375	2	471.286943	940.559333	0.39577	0.00018652	0.059333	2.7963E-05	0.45511	0.00021449	471.2868394335814	72.34	7.0488	72.34	69.552	76.6	0					308	176	2	0	0	0	0.41408	1	7067	7067		66.429	0.96389	1	3030900	+		53851	18595	44525	44561	58598	58598					0.0866752859137705
SLLAGQVGLV	10	Unmodified	_SLLAGQVGLV_					0	0	0			REV__nc|ENSG00000164113|Q96M93-3|ADAD1	REV__nc|ENSG00000164113|Q96M93-3|ADAD1	MULTI-MSMS	OvCa99_classI_Rep5	1	478.79412841796875	2	478.792392	955.570232	2.2559	0.0010801	0.22682	0.0001086	2.4827	0.0011887	478.7924031970105	80.64	0.68088	80.64	80.399	81.08	0					39	15	4	0	0	0	0.32926	1	8266	8266		77.318	0.54344	1	2359000	+		53852	20943	44526	44562	58599	58599					0.09066930965650499
SLLAIALASV	10	Unmodified	_SLLAIALASV_					0	0	0			REV__tr|A0A553SIN5|A0A553SIN5_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_15210PE=3SV=1	REV__tr|A0A553SIN5|A0A553SIN5_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_15210PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.7367248535156	2	479.302593	956.590633	2.191	0.0010501	-1.4404	-0.00069038	0.7506	0.00035976	479.30186862229715	95.38	0.46156	95.38	95.033	95.495	0					13	10	2	0	0	0	0.02661	1	10374	10374		40.778	0	1	363620	+		53853	29913	44527	44563	58600	58600					0.1106010162544635
SLLATAILGA	10	Unmodified	_SLLATAILGA_					0	0	0		ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	MULTI-MSMS	OvCa9_classI_Rep2	2	465.2868957519531	2	465.286943	928.559333	0.40865	0.00019014	-0.89022	-0.00041421	-0.48157	-0.00022407	465.2865075151942	125.02	3.4561	124.79	124.42	127.87	-0.2359					183	69	5	0	0	0	0.49558	1	12250	12250		54.776	0.053964	1	4060300			53854	5306	44528	44564	58601	58601					0.09219528591370363
SLLATAILGA	10	Unmodified	_SLLATAILGA_					0	0	0		ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.2857971191406	2	465.286943	928.559333	-2.3863	-0.0011103	1.7939	0.00083465	-0.59247	-0.00027567	465.2877596727037	126.27	3.4031	124.85	124.48	127.88	-1.4143					181	67	5	0	0	0	0.13504	1	12005	12005		104.75	3.1458	1	4410500			53855	5306	44528	44564	58602	58602					0.09219528591370363
SLLATILPII	10	Unmodified	_SLLATILPII_					0	0	0			REV__tr|A0A7D6VVN7|A0A7D6VVN7_9CLOTATP-dependentzincmetalloproteaseFtsHOS=ClostridiumintestinaleOX=36845GN=hflBPE=3SV=1	REV__tr|A0A7D6VVN7|A0A7D6VVN7_9CLOTATP-dependentzincmetalloproteaseFtsHOS=ClostridiumintestinaleOX=36845GN=hflBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	527.3488159179688	2	527.349543	1052.68453	-1.4201	-0.00074888	2.2078	0.0011643	0.78775	0.00041542	527.3505497041667	101.47	2.2998	99.862	99.344	101.64	-1.6053					125	43	4	0	0	0	0.50656	2	6960	6953;6960		53.351	22.848	1	388450	+		53856	31728	44529	44565	58603;58604	58604					0.1602982072774921
SLLATILPII	10	Unmodified	_SLLATILPII_					0	0	0			REV__tr|A0A7D6VVN7|A0A7D6VVN7_9CLOTATP-dependentzincmetalloproteaseFtsHOS=ClostridiumintestinaleOX=36845GN=hflBPE=3SV=1	REV__tr|A0A7D6VVN7|A0A7D6VVN7_9CLOTATP-dependentzincmetalloproteaseFtsHOS=ClostridiumintestinaleOX=36845GN=hflBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.349365234375	2	527.349543	1052.68453	-0.81701	-0.00043085	1.5396	0.0008119	0.72257	0.00038105	527.3501711257758	102.27	2.0913	100.07	99.522	101.61	-2.1994					113	39	4	0	0	0	0.7759	1	9219	9219		21.96	1.013	1	324850	+		53857	31728	44529	44565	58605	58605					0.1602982072774921
SLLCPPPGW	9	Unmodified	_SLLCPPPGW_					0	0	0		ENST00000608737.3_2_3:195428445-195429162:+|nuORF	ENST00000608737.3_2_3:195428445-195429162:+|nuORF	ENST00000608737.3_2_3:195428445-195429162:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	485.2457275390625	2	485.246763	968.478974	1.0173	0.00049362	-3.8699	-0.0018778	-2.8526	-0.0013842	485.2442984238108	123.73	1.1341	122.69	122.41	123.55	-1.0377					68	21	5	0	0	0	0.52083	1	9558	9558		40.573	1.7665	1	138540			53858	14299	44530	44566	58606	58606					-0.006526560033194073
SLLDDLHSA	9	Unmodified	_SLLDDLHSA_					0	0	0		ENSG00000162378|ENST00000294353|ZYG11B;nc|ENSG00000162378|Q9C0D3-2|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	MULTI-MSMS	OvCa99_classI_Rep5	1	485.74749755859375	2	485.745639	969.476725	2.7658	0.0013435	-0.019761	-9.5986E-06	2.746	0.0013339	485.7454542246795	99.177	0.61076	99.177	98.877	99.488	0					43	14	5	0	0	0	0.083631	1	10949	10949		101.6	4.128	1	4686400			53859	6173	44531	44567	58607	58607					-0.009234132074311674
SLLDDLHSA	9	Unmodified	_SLLDDLHSA_					0	0	0		ENSG00000162378|ENST00000294353|ZYG11B;nc|ENSG00000162378|Q9C0D3-2|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	485.745639	969.476725	-0.8078	-0.00039238	4.1716	0.0020263	3.3638	0.0016339	485.74753391850123	100.04	1.0415	99.214	98.914	99.956	-0.83051	0.032303	0.0024948	NaN	101.6	42	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51779			53860	6173	44531	44567							-0.009234132074311674
SLLDDLHSA	9	Unmodified	_SLLDDLHSA_					0	0	0		ENSG00000162378|ENST00000294353|ZYG11B;nc|ENSG00000162378|Q9C0D3-2|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	ENSG00000162378|ENST00000294353|ZYG11B	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	485.745639	969.476725	-0.50792	-0.00024672	2.8459	0.0013824	2.338	0.0011357	485.7468916857585	101.42	1.0998	99.154	98.929	100.03	-2.2665	-0.027982	0.001207	NaN	101.6	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55313			53861	6173	44531	44567							-0.009234132074311674
SLLDIIEKV	9	Unmodified	_SLLDIIEKV_					0	0	0		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;TSC2|p.R799Afs*25|1|0.29|ENSG00000103197|chr16:2074238-2074253|CCGCTGTGCCAGCCAG/-|frameshift_variant	nc|ENSG00000103197|P49815-7|TSC2	nc|ENSG00000103197|P49815-7|TSC2	MULTI-MSMS	OvCa99_classI_Rep5	1	515.3148193359375	2	515.313158	1028.61176	1.0252	0.00052832	0.56199	0.0002896	1.5872	0.00081792	515.3133706351194	145.95	1.3843	145.95	145.63	147.01	0					75	27	5	0	0	0	0.014622	3	17071	17049;17071;17095		154.12	30.038	1	2060800			53862	2293	44532	44568	58608;58609;58610	58609					0.098600669343341
SLLDIIEKV	9	Unmodified	_SLLDIIEKV_					0	0	0		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;TSC2|p.R799Afs*25|1|0.29|ENSG00000103197|chr16:2074238-2074253|CCGCTGTGCCAGCCAG/-|frameshift_variant	nc|ENSG00000103197|P49815-7|TSC2	nc|ENSG00000103197|P49815-7|TSC2	MULTI-MSMS	OvCa9_classI_Rep2	2	515.3123779296875	2	515.313158	1028.61176	-2.0056	-0.0010335	1.8841	0.00097089	-0.12149	-6.2607E-05	515.3140081075317	145.09	0.89413	144.86	144.63	145.53	-0.22696					38	17	3	0	0	0	0.1944	3	14622	14616;14622;14634		77.318	22.541	1	77193			53863	2293	44532	44568	58611;58612;58613	58612					0.098600669343341
SLLDIIEKV	9	Unmodified	_SLLDIIEKV_					0	0	0		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;TSC2|p.R799Afs*25|1|0.29|ENSG00000103197|chr16:2074238-2074253|CCGCTGTGCCAGCCAG/-|frameshift_variant	nc|ENSG00000103197|P49815-7|TSC2	nc|ENSG00000103197|P49815-7|TSC2	MULTI-MSMS	OvCa9_classI_Rep3	3	515.3124389648438	2	515.313158	1028.61176	-2.9406	-0.0015153	3.0269	0.0015598	0.086265	4.4453E-05	515.3145381993642	145.98	1.3916	145.02	144.7	146.09	-0.95947					60	27	3	0	0	0	0.17606	4	12231	12231;12236;12241;12249		80.455	13.944	1	100210			53864	2293	44532	44568	58614;58615;58616;58617	58614					0.098600669343341
SLLDIIEKV	9	Unmodified	_SLLDIIEKV_					0	0	0		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;TSC2|p.R799Afs*25|1|0.29|ENSG00000103197|chr16:2074238-2074253|CCGCTGTGCCAGCCAG/-|frameshift_variant	nc|ENSG00000103197|P49815-7|TSC2	nc|ENSG00000103197|P49815-7|TSC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.3119506835938	2	515.313158	1028.61176	-1.5625	-0.00080518	1.4351	0.00073953	-0.1274	-6.5653E-05	515.3137105845175	146.43	3.1469	145	143.73	146.88	-1.4357					100	61	3	0	0	0	0.16264	2	14388	14388;14400		82.75	24.521	1	109990			53865	2293	44532	44568	58618;58619	58618					0.098600669343341
SLLDKIIGA	9	Unmodified	_SLLDKIIGA_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	OvCa99_classI_Rep5	1	465.288330078125	2	465.286943	928.559333	1.1573	0.00053847	0.013306	6.1913E-06	1.1706	0.00054466	465.28690894468224	123.63	2.1609	123.63	123.33	125.49	0					141	49	6	0	0	0	0.03923	6	14353	14233;14257;14281;14305;14329;14353		127.46	8.7186	1	30233000			53866	7686	44533	44569	58620;58621;58622;58623;58624;58625	58625					0.09219528591370363
SLLDKIIGA	9	Unmodified	_SLLDKIIGA_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	OvCa9_classI_Rep2	2	465.2865905761719	2	465.286943	928.559333	0.40865	0.00019014	-0.89022	-0.00041421	-0.48157	-0.00022407	465.2865075151942	125.02	3.4561	124.79	124.42	127.87	-0.2359					183	69	5	0	0	0	0.025955	17	12177	12148;12160;12165;12171;12177;12183;12189;12195;12201;12213;12219;12225;12232;12238;12256;12263;12269		139.97	16.865	1	4060300			53867	7686	44533	44569	58626;58627;58628;58629;58630;58631;58632;58633;58634;58635;58636;58637;58638;58639;58640;58641;58642	58630					0.09219528591370363
SLLDKIIGA	9	Unmodified	_SLLDKIIGA_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	OvCa9_classI_Rep3	3	465.2859191894531	2	465.286943	928.559333	1.3406	0.00062376	-2.0993	-0.00097679	-0.75874	-0.00035303	465.28596646402366	125.96	2.9835	124.9	124.53	127.51	-1.0519					156	57	5	0	0	0	0.013371	16	9814	9796;9802;9808;9814;9826;9838;9845;9851;9863;9869;9875;9881;9887;9893;9900;9914		158.07	21.806	1	4345900			53868	7686	44533	44569	58643;58644;58645;58646;58647;58648;58649;58650;58651;58652;58653;58654;58655;58656;58657;58658	58646					0.09219528591370363
SLLDKIIGA	9	Unmodified	_SLLDKIIGA_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.2862243652344	2	465.286943	928.559333	-2.3863	-0.0011103	1.7939	0.00083465	-0.59247	-0.00027567	465.2877596727037	126.27	3.4031	124.85	124.48	127.88	-1.4143					181	67	5	0	0	0	0.025955	9	12028	11993;12017;12028;12053;12077;12089;12102;12114;12126		139.97	8.7186	1	4410500			53869	7686	44533	44569	58659;58660;58661;58662;58663;58664;58665;58666;58667	58661					0.09219528591370363
SLLDLMKP	8	Unmodified	_SLLDLMKP_					0	0	0			REV__OR5M9|p.E81_N82delinsD|1|0.07|ENSG00000150269|chr11:56463157-56463159|TTT/-|inframe_deletion	REV__OR5M9|p.E81_N82delinsD|1|0.07|ENSG00000150269|chr11:56463157-56463159|TTT/-|inframe_deletion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	459.2464904785156	2	458.762246	915.50994	-0.24886	-0.00011417	1.0817	0.00049623	0.83281	0.00038206	458.7639246631904	62.283	0.78119	58.825	58.429	59.21	-3.4577					20	15	2	0	0	0	0.028476	1	4280	4280		29.15	0	1	23711	+		53870	29271	44534	44570	58668	58668					0.04880497310921328
SLLDNLFFAL	10	Unmodified	_SLLDNLFFAL_					0	0	0			REV__nc|ENSG00000116641|Q96N67-4|DOCK7	REV__nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-SECPEP	OvCa9_classI_Rep3	3	577.368408203125	2	576.818607	1151.62266	0.39644	0.00022868	-3.3027	-0.0019051	-2.9063	-0.0016764	576.8167733224388	127.33	0.36041	126.26	126.02	126.38	-1.0715					8	6	2	0	0	0	0.026782	1	9953	9953		45.972	3.5761	1	11604	+		53871	18308	44535	44571	58669	58669					0.05291469308622254
SLLDNMIGV	9	Unmodified	_SLLDNMIGV_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;ENST00000471904.1_1_2:192128111-192215016:+|nuORF	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	OvCa99_classI_Rep5	1	481.2575378417969	2	481.254785	960.495018	1.6016	0.00077077	0.13329	6.4145E-05	1.7349	0.00083491	481.2546999549223	148.09	0.8313	148.09	147.74	148.57	0					27	16	3	0	0	0	0.026923	1	17323	17323		138.83	42.635	1	154400			53872	3897	44536	44572	58670	58670					0.013190054429401243
SLLDPVPEV	9	Unmodified	_SLLDPVPEV_					0	0	0		ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	ENSG00000089154|ENST00000300648|GCN1	MULTI-MSMS	OvCa99_classI_Rep5	1	484.76922607421875	2	484.768583	967.522613	1.1099	0.00053804	0.8355	0.00040502	1.9454	0.00094306	484.76871709502075	131.37	0.56595	131.37	131.06	131.62	0					23	11	3	0	0	0	0.24951	1	15258	15258		68.787	0	1	141430			53873	1811	44537	44573	58671	58671					0.03755231974810158
SLLDRFLATV	10	Unmodified	_SLLDRFLATV_					0	0	0		nc|ENSG00000118816|Q14094-2|CCNI;ENSG00000118816|ENST00000237654|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	MULTI-MSMS	OvCa99_classI_Rep5	1	567.8306884765625	2	567.829506	1133.64446	1.4352	0.00081494	-1.8397	-0.0010446	-0.4045	-0.00022969	567.8284558377638	149.73	1.1404	149.73	149.4	150.54	0					73	22	5	0	0	0	0.013471	3	17534	17512;17534;17558		155.58	53.984	1	2477000			53874	3325	44538	44574	58672;58673;58674	58673					0.08298274057187882
SLLDRFLATV	10	Unmodified	_SLLDRFLATV_					0	0	0		nc|ENSG00000118816|Q14094-2|CCNI;ENSG00000118816|ENST00000237654|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	MULTI-MATCH	OvCa9_classI_Rep3	3		2	567.829506	1133.64446	-4.6617	-0.0026471	4.5062	0.0025587	-0.15553	-8.8314E-05	567.8320271387344	150.46	0.70508	149.5	149.2	149.91	-0.95647	-0.058507	0.0063573	NaN	155.58	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15501			53875	3325	44538	44574							0.08298274057187882
SLLDRFLATV	10	Unmodified	_SLLDRFLATV_					0	0	0		nc|ENSG00000118816|Q14094-2|CCNI;ENSG00000118816|ENST00000237654|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	nc|ENSG00000118816|Q14094-2|CCNI	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	567.829506	1133.64446	-2.3738	-0.0013479	1.9592	0.0011125	-0.41458	-0.00023541	567.8303851140389	150.88	0.61101	149.45	149.27	149.88	-1.4344	-0.10926	0.0034648	NaN	155.58	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12641			53876	3325	44538	44574							0.08298274057187882
SLLENLEKI	9	Unmodified	_SLLENLEKI_					0	0	0		nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;nc|ENSG00000092199|P07910-3|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENST00000553444.1_1_14:21679384-21680083:-|nuORF	nc|ENSG00000092199|P07910-4|HNRNPC	nc|ENSG00000092199|P07910-4|HNRNPC	MULTI-MSMS	OvCa9_classI_Rep2	2	529.80810546875	2	529.808239	1057.60193	-1.9861	-0.0010522	1.7049	0.00090325	-0.28122	-0.00014899	529.8090229846803	119.94	1.6785	119.77	119.5	121.17	-0.17138					110	33	6	0	0	0	0.00038699	6	11559	11547;11553;11559;11565;11571;11578		243.29	4.1625	1	1353600			53877	1889	44539	44575	58675;58676;58677;58678;58679;58680	58677					0.07542878928961727
SLLENLEKI	9	Unmodified	_SLLENLEKI_					0	0	0		nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;nc|ENSG00000092199|P07910-3|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENST00000553444.1_1_14:21679384-21680083:-|nuORF	nc|ENSG00000092199|P07910-4|HNRNPC	nc|ENSG00000092199|P07910-4|HNRNPC	MULTI-MSMS	OvCa9_classI_Rep3	3	529.8080444335938	2	529.808239	1057.60193	1.1775	0.00062383	-1.7134	-0.00090776	-0.5359	-0.00028393	529.8073101508535	120.83	2.5422	119.8	119.46	122	-1.0271					124	48	5	0	0	0	1.0197E-06	11	9214	9214;9220;9226;9238;9245;9251;9257;9264;9270;9283;9296		254.98	0	1	1784400			53878	1889	44539	44575	58681;58682;58683;58684;58685;58686;58687;58688;58689;58690;58691	58681					0.07542878928961727
SLLENLEKI	9	Unmodified	_SLLENLEKI_					0	0	0		nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;nc|ENSG00000092199|P07910-3|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENST00000553444.1_1_14:21679384-21680083:-|nuORF	nc|ENSG00000092199|P07910-4|HNRNPC	nc|ENSG00000092199|P07910-4|HNRNPC	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.8084716796875	2	529.808239	1057.60193	-1.312	-0.00069511	0.84604	0.00044824	-0.46596	-0.00024687	529.8086198814409	121.17	2.4767	119.82	119.54	122.02	-1.3479					138	48	5	0	0	0	3.5547E-11	3	11414	11414;11439;11451		271.48	0	1	1825800			53879	1889	44539	44575	58692;58693;58694	58692					0.07542878928961727
SLLEPNPSVK	10	Unmodified	_SLLEPNPSVK_					0	0	0			REV__nc|ENSG00000172403|Q9UMS6-4|SYNPO2	REV__nc|ENSG00000172403|Q9UMS6-4|SYNPO2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.8226318359375	2	542.305864	1082.59717	-0.71552	-0.00038803	3.5064	0.0019015	2.7909	0.0015135	542.3075680986069	102.22	1.157	100.02	99.78	100.94	-2.1994					38	21	2	0	0	0	0.026734	1	9221	9221		31.53	0	1	112100	+		53880	21696	44540	44576	58695	58695					0.05917994786182135
SLLEQHINI	9	Unmodified	_SLLEQHINI_					0	0	0		ENST00000460773.5_1_X:138814597-138879340:-|nuORF;nc|ENSG00000101974|Q8NB49-2|ATP11C;nc|ENSG00000101974|Q8NB49-3|ATP11C;nc|ENSG00000101974|Q8NB49-4|ATP11C;ENSG00000101974|ENST00000682941|ATP11C;nc|ENSG00000101974|Q8NB49|ATP11C	ENST00000460773.5_1_X:138814597-138879340:-|nuORF	ENST00000460773.5_1_X:138814597-138879340:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	533.7998657226562	2	533.798206	1065.58186	3.5779	0.0019099	-1.4382	-0.00076771	2.1397	0.0011422	533.7974382602388	88.151	0.79613	88.151	87.881	88.677	0					34	18	3	0	0	0	0.38969	1	9356	9356		52.937	3.4007	1	2441600			53881	12156	44541	44577	58696	58696					0.05169127988983746
SLLEVKEQL	9	Unmodified	_SLLEVKEQL_					0	0	0			REV__ENSG00000155827|ENST00000389120|RNF20	REV__ENSG00000155827|ENST00000389120|RNF20	MULTI-MSMS	OvCa9_classI_Rep2	2	529.8078002929688	2	529.808239	1057.60193	-1.9861	-0.0010522	1.7049	0.00090325	-0.28122	-0.00014899	529.8090229846803	119.94	1.6785	119.77	119.5	121.17	-0.17138					110	33	6	0	0	0	0.049969	1	11584	11584		118.74	0.93201	1	1353600	+		53882	20442	44542	44578	58697	58697					0.07542878928961727
SLLEVKEQL	9	Unmodified	_SLLEVKEQL_					0	0	0			REV__ENSG00000155827|ENST00000389120|RNF20	REV__ENSG00000155827|ENST00000389120|RNF20	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.8067016601562	2	529.808239	1057.60193	-1.312	-0.00069511	0.84604	0.00044824	-0.46596	-0.00024687	529.8086198814409	121.17	2.4767	119.82	119.54	122.02	-1.3479					138	48	5	0	0	0	0.34132	1	11500	11500		58.23	0	1	1825800	+		53883	20442	44542	44578	58698	58698					0.07542878928961727
SLLEYRKRQRE	11	Unmodified	_SLLEYRKRQRE_					0	0	0		nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000005483|Q8IZD2-7|KMT2E;ENSG00000005483|ENST00000311117|KMT2E;KMT2E|p.Q1472Sfs*3|1|0.06|ENSG00000005483|chr7:105112169-105112169|A/-|frameshift_variant;nc|ENSG00000005483|Q8IZD2-6|KMT2E;nc|ENSG00000005483|Q8IZD2-5|KMT2E	nc|ENSG00000005483|Q8IZD2-2|KMT2E;nc|ENSG00000005483|Q8IZD2-5|KMT2E	nc|ENSG00000005483|Q8IZD2-5|KMT2E	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.7659606933594	3	493.279313	1476.81611	0.45716	0.00022551	0.60428	0.00029808	1.0614	0.00052359	493.2800250730603	66.946	0.79312	64.285	63.95	64.743	-2.661					24	15	3	0	0	0	0.026145	1	5247	5247		8.7993	0	1	29305			53884	14858;856	44543	44579	58699	58699					0.09677399077531845
SLLFFGATVI	10	Unmodified	_SLLFFGATVI_					0	0	0			REV__tr|A0A553SGP8|A0A553SGP8_NIACINCS2familypermeaseOS=NialliacirculansOX=1397GN=CEQ21_11280PE=3SV=1	REV__tr|A0A553SGP8|A0A553SGP8_NIACINCS2familypermeaseOS=NialliacirculansOX=1397GN=CEQ21_11280PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.3107299804688	2	534.310418	1066.60628	-2.6976	-0.0014413	2.9376	0.0015696	0.24005	0.00012826	534.3118641663157	125.31	1.0556	123.9	123.62	124.68	-1.4143					48	20	3	0	0	0	0.49558	1	11912	11912		54.776	1.6874	1	114010	+		53885	29727	44544	44580	58700	58700					0.07564388142509415
SLLFHLPLL	9	Unmodified	_SLLFHLPLL_					0	0	0		ENST00000491547.1_1_1:15389965-15392290:+|nuORF	ENST00000491547.1_1_1:15389965-15392290:+|nuORF	ENST00000491547.1_1_1:15389965-15392290:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	526.8256225585938	2	526.828778	1051.643	-1.2645	-0.00066616	-3.537	-0.0018634	-4.8015	-0.0025295	526.8270166019133	100.56	1.3878	99.727	99.36	100.75	-0.83051					64	27	4	0	0	0	0.34496	2	9215	9202;9215		57.811	5.4411	1	388760			53886	12713	44545	44581	58701;58702	58702					0.11924684759082993
SLLFMSCICI	10	Unmodified	_SLLFMSCICI_					0	0	0		ENST00000476496.5_3_17:15884366-15884429:-|nuORF	ENST00000476496.5_3_17:15884366-15884429:-|nuORF	ENST00000476496.5_3_17:15884366-15884429:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.28173828125	2	565.276349	1128.53814	2.0589	0.0011638	3.9418	0.0022282	6.0006	0.003392	565.2786176670974	97.196	0.90693	94.77	94.516	95.423	-2.4256					29	17	2	0	0	0	0.37918	1	8604	8604		71.296	4.8664	1	112820			53887	12467	44546	44582	58703	58703					-0.020982640956617615
SLLFTWLI	8	Unmodified	_SLLFTWLI_					0	0	0		ENST00000334529.9_1_3:112182899-112183094:-|nuORF	ENST00000334529.9_1_3:112182899-112183094:-|nuORF	ENST00000334529.9_1_3:112182899-112183094:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	496.791259765625	2	496.794404	991.574254	-0.81768	-0.00040622	-3.442	-0.00171	-4.2597	-0.0021162	496.79255828453705	116.33	1.385	116.2	115.92	117.31	-0.12869					58	27	3	0	0	0	0.7043	1	11131	11131		42.474	3.6683	1	128730			53888	10486	44547	44583	58704	58704					0.07813020459389008
SLLGDDALVQV	11	Unmodified	_SLLGDDALVQV_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;SF3B3|p.K976Dfs*14|1|0.12|ENSG00000189091|chr16:70567509-70567510|-/GACTATTTTACCATAATTTTTA|frameshift_variant;SF3B3-DDX19B|4|fusion;SF3B3-DDX19B|1|fusion;ENST00000568291.2_1_16:70588380-70590279:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OvCa9_classI_Rep3	3	565.3075561523438	2	565.308603	1128.60265	-1.3012	-0.00073556	0.15833	8.9507E-05	-1.1428	-0.00064605	565.3089105278221	136.37	0.83655	135.26	135.05	135.88	-1.1076					29	16	3	0	0	0	0.41656	1	11074	11074		59.931	1.7009	1	40302			53889	8533	44548	44584	58705	58705					0.043496735779854134
SLLGDDALVQV	11	Unmodified	_SLLGDDALVQV_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;SF3B3|p.K976Dfs*14|1|0.12|ENSG00000189091|chr16:70567509-70567510|-/GACTATTTTACCATAATTTTTA|frameshift_variant;SF3B3-DDX19B|4|fusion;SF3B3-DDX19B|1|fusion;ENST00000568291.2_1_16:70588380-70590279:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	565.308603	1128.60265	-0.19688	-0.0001113	0.18998	0.0001074	-0.0068975	-3.8992E-06	565.3085452037121	135.75	0.73689	135.52	135.32	136.06	-0.22697	0.19425	0.0018039	NaN	59.931	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34134			53890	8533	44548	44584							0.043496735779854134
SLLGFVYKL	9	Unmodified	_SLLGFVYKL_					0	0	0		nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	MULTI-MSMS	OvCa99_classI_Rep5	1	520.3140258789062	2	520.312961	1038.61137	1.5363	0.00079934	0.83783	0.00043594	2.3741	0.0012353	520.3131963136592	136.72	0.76663	136.72	136.44	137.21	0					35	15	4	0	0	0	0.11471	1	15935	15935		93.195	7.836	1	726510			53891	8279	44549	44585	58706	58706					0.09360692005134297
SLLGGTFVGI	10	Unmodified	_SLLGGTFVGI_					0	0	0		nc|ENSG00000139291|Q96HH6-2|TMEM19;ENSG00000139291|ENST00000266673|TMEM19	nc|ENSG00000139291|Q96HH6-2|TMEM19	nc|ENSG00000139291|Q96HH6-2|TMEM19	MULTI-SECPEP	OvCa9_classI_Rep3	3	481.3125	2	482.279118	962.543683	1.8488	0.00089163	-1.5742	-0.00075919	0.27461	0.00013244	482.2781837497549	112.11	0.88667	111	110.75	111.63	-1.1038					39	17	3	0	0	0	0.026639	1	8232	8232		20.947	0	1	62834			53892	4763	44550	44586	58707	58707					0.06091242074330694
SLLGHLMIV	9	Unmodified	_SLLGHLMIV_					0	0	0		ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	ENSG00000169567|ENST00000304043|HINT1	MULTI-MSMS	OvCa99_classI_Rep5	1	491.7922058105469	2	491.791338	981.568123	1.4661	0.00072099	0.44736	0.00022001	1.9134	0.000941	491.7913922765234	129.89	0.79712	129.89	129.54	130.34	0					30	16	3	0	0	0	0.25214	1	15066	15066		68.485	5.5063	1	216010			53893	7019	44551	44587	58708	58708					0.07660178956200525
SLLGKNRGLH	10	Unmodified	_SLLGKNRGLH_					0	0	0		L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|183|3|anti-sense	L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|183|3|anti-sense	L1MA6_dup23|chr1:41167702-41170310:-|1.7687493242313057|0.4095800054028756|2.11|429.0|183|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	547.8272094726562	2	547.825089	1093.63563	0.72609	0.00039777	3.8049	0.0020844	4.531	0.0024822	547.8270506208329	157.88	1.793	157.88	157.1	158.89	0					98	36	3	0	0	0	0.58282	1	18465	18465		44.117	6.3053	1	253440			53894	14584	44552	44588	58709	58709					0.0925534521136342
SLLGVQVAQP	10	Unmodified	_SLLGVQVAQP_					0	0	0			REV__ENSG00000114270|ENST00000681320|COL7A1	REV__ENSG00000114270|ENST00000681320|COL7A1	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.81121826171875	2	506.295299	1010.57605	-0.94421	-0.00047805	1.6058	0.00081302	0.66161	0.00033497	506.2958161046797	89.029	1.1453	86.898	86.654	87.799	-2.1309					37	22	3	0	0	0	0.026493	1	5476	5476		54.776	17.617	1	292590	+		53895	18183	44553	44589	58710	58710					0.07118029477328491
SLLGWLLPL	9	Unmodified	_SLLGWLLPL_					0	0	0			REV__ENST00000445355.7_1_10:135075987-135076521:-|nuORF	REV__ENST00000445355.7_1_10:135075987-135076521:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.30322265625	2	506.315503	1010.61645	-1.0371	-0.00052512	-3.5104	-0.0017774	-4.5475	-0.0023025	506.313595789912	97.601	1.054	95.841	95.569	96.623	-1.7595					49	20	3	0	0	0	0.027441	1	6494	6494		45.952	1.8352	1	268930	+		53896	25887	44554	44590	58711	58711					0.11156995867759179
SLLGYFALI	9	Unmodified	_SLLGYFALI_					0	0	0			REV__LLGL2-TMEM104|1|fusion	REV__LLGL2-TMEM104|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	498.7908020019531	2	498.791861	995.569169	-0.82368	-0.00041084	-3.8314	-0.0019111	-4.6551	-0.0023219	498.78992392916325	116.11	3.0188	115.07	114.6	117.62	-1.0414					179	60	5	0	0	0	0.22913	1	8742	8742		71.378	0	1	2745900	+		53897	28620	44555	44591	58712	58712					0.07120716596762122
SLLHMPFTI	9	Unmodified	_SLLHMPFTI_					0	0	0		nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	MULTI-MSMS	OvCa99_classI_Rep5	1	529.7899169921875	2	529.788795	1057.56304	1.6819	0.00089104	0.17	9.0064E-05	1.8519	0.00098111	529.7887292472137	135.76	1.0799	135.76	135.41	136.49	0					46	22	3	0	0	0	0.055688	2	15810	15810;15834		115.46	38.141	1	1026500			53898	8965	44556	44592	58713;58714	58713					0.03655875093591021
SLLIDWPTV	9	Unmodified	_SLLIDWPTV_					0	0	0			REV__nc|ENSG00000205268|Q13946-3|PDE7A	REV__nc|ENSG00000205268|Q13946-3|PDE7A	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8154907226562	2	522.292225	1042.5699	1.8079	0.00094426	-4.2944	-0.0022429	-2.4865	-0.0012987	522.7916369075355	107.37	0.33197	107.37	107.31	107.65	0					10	7	2	0	0	0	0.027462	1	12125	12125		21.96	3.6355	1	201650	+		53899	23207	44557	44593	58715	58715					0.05031511245783804
SLLIDWPTV	9	Unmodified	_SLLIDWPTV_					0	0	0			REV__nc|ENSG00000205268|Q13946-3|PDE7A	REV__nc|ENSG00000205268|Q13946-3|PDE7A	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	522.292225	1042.5699	-1.4863	-0.0007763	2.7816	0.0014528	1.2953	0.0006765	522.7962304928055	108.95	0.41096	107.22	106.92	107.33	-1.7256	-0.076603	0.0041648	NaN	21.96	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13173	+		53900	23207	44557	44593							0.05031511245783804
SLLIICFPL	9	Unmodified	_SLLIICFPL_					0	0	0		ENST00000314622.8_1_3:93846579-93846807:+|nuORF	ENST00000314622.8_1_3:93846579-93846807:+|nuORF	ENST00000314622.8_1_3:93846579-93846807:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.8026123046875	2	509.803914	1017.59328	2.0238	0.0010317	-2.3362	-0.001191	-0.31239	-0.00015926	509.80258654056354	136.53	4.9049	134.99	133.61	138.51	-1.5437					290	101	5	0	0	0	0.64339	1	13241	13241		26.796	1.3459	1	173450			53901	10325	44558	44594	58716	58716					0.08518233758763927
SLLILPYLY	9	Unmodified	_SLLILPYLY_					0	0	0			REV__tr|A0A553SRI7|A0A553SRI7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01175PE=4SV=1	REV__tr|A0A553SRI7|A0A553SRI7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01175PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	547.826171875	2	547.828443	1093.64233	-3.828	-0.0020971	0.085556	4.687E-05	-3.7425	-0.0020502	547.8283345690601	154.13	2.0065	153.91	153.15	155.16	-0.22697					93	45	3	0	0	0	0.65476	1	15755	15755		25.45	0	1	59433	+		53902	30732	44559	44595	58717	58717					0.09925845319389737
SLLIRLPLN	9	Unmodified	_SLLIRLPLN_					0	0	0			REV__ENST00000476966.5_1_1:156383203-156383374:-|nuORF	REV__ENST00000476966.5_1_1:156383203-156383374:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.7756958007812	2	519.837134	1037.65972	0.52925	0.00027513	-1.6306	-0.00084762	-1.1013	-0.0005725	519.8357606269744	79.357	1.2263	77.617	76.951	78.177	-1.7398					47	23	3	0	0	0	0.027462	1	6587	6587		35.618	12.576	1	110380	+		53903	26377	44560	44596	58718	58718					0.1423918564505584
SLLISADDAD	10	Unmodified	_SLLISADDAD_					0	0	0		MDN1|p.E2141D|1|0.04|ENSG00000112159|chr6:89718526-89718526|T/A|missense_variant	MDN1|p.E2141D|1|0.04|ENSG00000112159|chr6:89718526-89718526|T/A|missense_variant	MDN1|p.E2141D|1|0.04|ENSG00000112159|chr6:89718526-89718526|T/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.271484375	2	510.248212	1018.48187	1.7267	0.00088107	2.4917	0.0012714	4.2185	0.0021525	510.75059826154455	92.432	0.67091	92.432	92.132	92.803	0					34	15	3	0	0	0	0.02661	1	10009	10009		49.442	15.269	1	281800			53904	14826	44561	44597	58719	58719					-0.026631541354845467
SLLKKLIMRRE	11	Unmodified	_SLLKKLIMRRE_					0	0	0		ENST00000262650.10_3_20:33077693-33080339:+|nuORF	ENST00000262650.10_3_20:33077693-33080339:+|nuORF	ENST00000262650.10_3_20:33077693-33080339:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	462.3238220214844	3	462.958635	1385.85407	0.30372	0.00014061	-3.4652	-0.0016042	-3.1615	-0.0014636	462.95717202348044	81.138	0.76003	79.49	79.315	80.075	-1.6485					22	14	2	0	0	0	0.02616	1	6912	6912		31.068	16.982	1	43855			53905	9898	44562	44598	58720	58720					0.17658193738679984
SLLKPDGMF	9	Unmodified	_SLLKPDGMF_					0	0	0		ENST00000413553.1_1_11:116740888-116740975:-|nuORF	ENST00000413553.1_1_11:116740888-116740975:-|nuORF	ENST00000413553.1_1_11:116740888-116740975:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	504.2672119140625	2	504.265153	1006.51575	1.4622	0.00073732	3.6302	0.0018306	5.0923	0.0025679	504.2668046517032	149.03	1.0251	149.03	148.67	149.7	0					31	20	2	0	0	0	0.46356	1	17465	17465		45.972	3.4978	1	230730			53906	11565	44563	44599	58721	58721					0.012755958225966424
SLLKSARM	8	Unmodified	_SLLKSARM_					0	0	0		ENST00000260604.8_1_2:55870335-55906871:-|nuORF	ENST00000260604.8_1_2:55870335-55906871:-|nuORF	ENST00000260604.8_1_2:55870335-55906871:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	453.25775146484375	2	453.265487	904.516422	-1.5542	-0.00070449	2.2919	0.0010388	0.73765	0.00033435	453.26621474423877	49.367	0.30809	46.225	46.095	46.403	-3.1416					9	5	3	0	0	0	0.028476	1	2773	2773		33.516	6.7195	1	72014			53907	9850	44564	44600	58722	58722					0.060344352623019404
SLLKTVKAV	9	Unmodified	_SLLKTVKAV_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENSG00000171914|ENST00000636159|TLN2;TLN2|p.L2360Pfs*51|1|0.07|ENSG00000171914|chr15:62833577-62833578|-/T|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1;ENSG00000171914|ENST00000636159|TLN2	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OvCa99_classI_Rep5	1	479.81976318359375	2	479.81841	957.622267	0.31374	0.00015054	-0.056151	-2.6942E-05	0.25759	0.0001236	479.8182705658234	62.968	0.83509	62.968	62.661	63.496	0					39	20	3	0	0	0	0.14855	1	5648	5648		85.161	10.118	1	1472400			53908	4552;7248	44565	44601	58723	58723					0.14176094379422466
SLLLEGEQL	9	Unmodified	_SLLLEGEQL_					0	0	0			REV__nc|ENSG00000120903|Q15822-2|CHRNA2	REV__nc|ENSG00000120903|Q15822-2|CHRNA2	MULTI-MSMS	OvCa99_classI_Rep5	1	501.2817077636719	2	501.279315	1000.54408	1.1777	0.00059037	-1.3253	-0.00066434	-0.14755	-7.3963E-05	501.2785475390403	149.96	0.74478	149.96	149.65	150.39	0					30	14	3	0	0	0	0.064985	2	17563	17539;17563		110.12	0	1	351580	+		53909	18522	44566	44602	58724;58725	58725					0.04382617003534506
SLLLIVLVE	9	Unmodified	_SLLLIVLVE_					0	0	0		nc|ENSG00000163817|Q9NP91-2|SLC6A20;ENSG00000163817|ENST00000358525|SLC6A20	nc|ENSG00000163817|Q9NP91-2|SLC6A20	nc|ENSG00000163817|Q9NP91-2|SLC6A20	MULTI-MSMS	OvCa99_classI_Rep5	1	499.82806396484375	2	499.828443	997.642334	-0.21549	-0.00010771	-1.7862	-0.00089279	-2.0017	-0.0010005	499.82740772321364	71.554	0.60783	71.554	71.308	71.916	0					35	14	3	0	0	0	0.50149	1	6917	6917		42.396	3.1433	1	2941200			53910	6365	44567	44603	58726	58726					0.14341845319381719
SLLLKKLDI	9	Unmodified	_SLLLKKLDI_					0	0	0		tr|A0A553SLK8|A0A553SLK8_NIACIMgahelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20805PE=4SV=1	tr|A0A553SLK8|A0A553SLK8_NIACIMgahelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20805PE=4SV=1	tr|A0A553SLK8|A0A553SLK8_NIACIMgahelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20805PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	521.846435546875	2	521.847167	1041.67978	2.2002	0.0011481	-2.739	-0.0014293	-0.53881	-0.00028118	521.8454557426686	90.234	0.7556	90.234	90.101	90.857	0					27	18	2	0	0	0	0.16562	1	9677	9677		82.241	10.363	1	5530000			53911	33736	44568	44604	58727	58727					0.16060936584972296
SLLLLLLAR	9	Unmodified	_SLLLLLLAR_					0	0	0			REV__ENSG00000137509|ENST00000313010|PRCP	REV__ENSG00000137509|ENST00000313010|PRCP	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.2597961425781	2	506.349877	1010.6852	-0.32072	-0.0001624	0.55721	0.00028214	0.23649	0.00011975	506.3497299511108	79.976	1.114	77.636	77.309	78.423	-2.3399					26	21	2	0	0	0	0.027462	1	4423	4423		21.96	0	1	25577	+		53912	19460	44569	44605	58728	58728					0.18028660167453836
SLLLPLDLG	9	Unmodified	_SLLLPLDLG_					0	0	0			REV__ENST00000568636.5_1_16:718678-720341:+|nuORF	REV__ENST00000568636.5_1_16:718678-720341:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.7877502441406	2	470.789318	939.564084	-0.18553	-8.7345E-05	-3.9883	-0.0018776	-4.1738	-0.001965	470.78744487463723	40.717	3.4773	37.763	37.112	40.589	-2.9541					147	66	5	0	0	0	0.55588	1	1765	1765		37.159	0	1	6500500	+		53913	27715	44570	44606	58729	58729					0.09188412734158646
SLLLQISIV	9	Unmodified	_SLLLQISIV_					0	0	0		ENST00000482433.1_1_19:2216201-2220604:+|nuORF	ENST00000482433.1_1_19:2216201-2220604:+|nuORF	ENST00000482433.1_1_19:2216201-2220604:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.32086181640625	2	493.318243	984.621933	-0.045161	-2.2279E-05	-0.87216	-0.00043025	-0.91732	-0.00045253	493.3177637339079	105.04	2.7633	103.03	102.64	105.4	-2.0161					193	53	7	0	0	0	0.094791	1	9623	9623		98.582	5.3865	1	5257600			53914	12572	44571	44607	58730	58730					0.12900674659556444
SLLLQVVGV	9	Unmodified	_SLLLQVVGV_					0	0	0			REV__ENSG00000167971|ENST00000343516|CASKIN1	REV__ENSG00000167971|ENST00000343516|CASKIN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.2823486328125	2	464.29731	926.580068	0.89782	0.00041685	-1.2171	-0.00056509	-0.31928	-0.00014824	464.2966211465636	97.027	0.84767	94.601	94.271	95.119	-2.4256					32	16	3	0	0	0	0.027441	1	8549	8549		32.812	0	1	112560	+		53915	21324	44572	44608	58731	58731					0.11384118971045609
SLLLRIGEV	9	Unmodified	_SLLLRIGEV_					0	0	0		TBC1D9B|p.G1112Vfs*34|1|0.27|ENSG00000197226|chr5:179863866-179863867|-/A|frameshift_variant;ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B;ENST00000520794.1_1_5:179290450-179293075:-|nuORF	TBC1D9B|p.G1112Vfs*34|1|0.27|ENSG00000197226|chr5:179863866-179863867|-/A|frameshift_variant	TBC1D9B|p.G1112Vfs*34|1|0.27|ENSG00000197226|chr5:179863866-179863867|-/A|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	500.3151550292969	2	500.313492	998.612431	1.6895	0.00084528	-0.26775	-0.00013396	1.4218	0.00071132	500.31339006354045	125.88	1.7414	125.88	125.57	127.32	0					117	37	5	0	0	0	0.40818	1	14677	14677		51.193	3.2332	1	17502000			53916	8691	44573	44609	58732	58732					0.11306906374045411
SLLLVNKDC	9	Unmodified	_SLLLVNKDC_					0	0	0		ENSG00000181378|ENST00000341552|CFAP65	ENSG00000181378|ENST00000341552|CFAP65	ENSG00000181378|ENST00000341552|CFAP65	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.79644775390625	2	502.775885	1003.53722	1.2191	0.00061293	-2.1885	-0.0011003	-0.96938	-0.00048738	502.77460333700407	79.099	0.56023	79.099	78.791	79.352	0					38	13	4	0	0	0	0.027462	1	8072	8072		24.203	0	1	3878200			53917	7928	44574	44610	58733	58733					0.035589808512895615
SLLMFLYKMID	11	Unmodified	_SLLMFLYKMID_					0	0	0			REV__ENSG00000218819|ENST00000405799|TDRD15	REV__ENSG00000218819|ENST00000405799|TDRD15	MULTI-SECPEP	OvCa9_classI_Rep4_	4	457.9253234863281	3	458.578432	1372.71347	0.66938	0.00030696	-0.63105	-0.00028939	0.038326	1.7575E-05	458.57787619665453	68.303	0.88248	64.813	64.43	65.312	-3.4902					40	17	3	0	0	0	0.026079	1	5069	5069		25.126	0.89417	1	81824	+		53918	23329	44575	44611	58734	58734					0.042018539702212365
SLLMLTTIQ	9	Unmodified	_SLLMLTTIQ_					0	0	0			REV__ENSG00000196497|ENST00000354464|IPO4;REV__ENST00000558780.5_2_14:24651254-24657791:-|nuORF	REV__ENST00000558780.5_2_14:24651254-24657791:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.31298828125	2	510.293911	1018.57327	2.031	0.0010364	-4.3995	-0.002245	-2.3685	-0.0012086	510.2915187135034	117.58	0.55751	117.58	117.46	118.02	0					14	11	2	0	0	0	0.027462	1	13520	13520		25.574	0	1	87492	+		53919	22836;27589	44576	44612	58735	58735					0.06472438028151828
SLLNAKKVL	9	Unmodified	_SLLNAKKVL_					0	0	0			REV__tr|A0A553SPJ8|A0A553SPJ8_NIACIM3familyoligoendopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_26390PE=3SV=1	REV__tr|A0A553SPJ8|A0A553SPJ8_NIACIM3familyoligoendopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_26390PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	493.3234558105469	2	493.32386	984.633166	-0.72862	-0.00035945	0.48404	0.00023879	-0.24458	-0.00012066	493.32396108529844	115.77	1.6299	114.73	114.45	116.08	-1.0414					67	32	3	0	0	0	0.48324	1	8635	8635		44.117	0	1	204450	+		53920	30544	44577	44613	58736	58736					0.14023496753691234
SLLNELEKI	9	Unmodified	_SLLNELEKI_					0	0	0			REV__nc|ENSG00000173230|Q14789|GOLGB1	REV__nc|ENSG00000173230|Q14789|GOLGB1	MULTI-MSMS	OvCa9_classI_Rep2	2	529.8080444335938	2	529.808239	1057.60193	-1.9861	-0.0010522	1.7049	0.00090325	-0.28122	-0.00014899	529.8090229846803	119.94	1.6785	119.77	119.5	121.17	-0.17138					110	33	6	0	0	0	0.024645	1	11598	11598		141.52	0	1	1353600	+		53921	21758	44578	44614	58737	58737					0.07542878928961727
SLLNELEKI	9	Unmodified	_SLLNELEKI_					0	0	0			REV__nc|ENSG00000173230|Q14789|GOLGB1	REV__nc|ENSG00000173230|Q14789|GOLGB1	MULTI-MSMS	OvCa9_classI_Rep3	3	529.8077392578125	2	529.808239	1057.60193	1.1775	0.00062383	-1.7134	-0.00090776	-0.5359	-0.00028393	529.8073101508535	120.83	2.5422	119.8	119.46	122	-1.0271					124	48	5	0	0	0	0.1243	1	9290	9290		90.601	0	1	1784400	+		53922	21758	44578	44614	58738	58738					0.07542878928961727
SLLPAIIRGV	10	Unmodified	_SLLPAIIRGV_					0	0	0			REV__ENSG00000135953|ENST00000258436|MFSD9	REV__ENSG00000135953|ENST00000258436|MFSD9	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.8134765625	2	519.837134	1037.65972	-0.25684	-0.00013351	0.0302	1.5699E-05	-0.22664	-0.00011781	519.836811247998	74.691	0.67523	72.72	72.324	72.999	-1.9711					13	8	2	0	0	0	0.027147	1	6085	6085		21.96	1.013	1	15033	+		53923	19340	44579	44615	58739	58739					0.14239185645033103
SLLPAIIRGV	10	Unmodified	_SLLPAIIRGV_					0	0	0			REV__ENSG00000135953|ENST00000258436|MFSD9	REV__ENSG00000135953|ENST00000258436|MFSD9	MULTI-MATCH	OvCa9_classI_Rep3	3		2	519.837134	1037.65972	-0.20231	-0.00010517	-0.32084	-0.00016679	-0.52315	-0.00027195	519.8365665705759	74.813	0.82645	72.403	72.142	72.969	-2.4106	-0.15877	-0.00023174	NaN	21.96	22	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28784	+		53924	19340	44579	44615							0.14239185645033103
SLLPALPKL	9	Unmodified	_SLLPALPKL_					0	0	0		ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.31549072265625	2	476.315503	950.616454	-0.97595	-0.00046486	0.76274	0.0003633	-0.21322	-0.00010156	476.315643847882	127.16	0.74284	125.72	125.44	126.19	-1.4357					29	14	3	0	0	0	0.63422	1	12134	12134		27.882	4.8398	1	28642			53925	1662	44580	44616	58740	58740					0.13916995867737114
SLLPALPKL	9	Unmodified	_SLLPALPKL_					0	0	0		ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	476.315503	950.616454	0.48578	0.00023138	-0.73496	-0.00035007	-0.24918	-0.00011869	476.31503902635797	125.84	0.4953	125.6	125.41	125.9	-0.2359	-0.10715	-7.1679E-05	NaN	27.882	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23559			53926	1662	44580	44616							0.13916995867737114
SLLPALPKL	9	Unmodified	_SLLPALPKL_					0	0	0		ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	476.315503	950.616454	2.0416	0.00097245	-2.4459	-0.001165	-0.40431	-0.00019258	476.31407828444327	126.87	0.67841	125.8	125.55	126.22	-1.0715	0.091835	-0.0017016	NaN	27.882	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38486			53927	1662	44580	44616							0.13916995867737114
SLLPEGPPAI	10	Unmodified	_SLLPEGPPAI_					0	0	0		nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1	nc|ENSG00000051108|Q15011-4|HERPUD1	nc|ENSG00000051108|Q15011-4|HERPUD1	MULTI-MSMS	OvCa9_classI_Rep3	3	497.2842102050781	2	497.2844	992.554247	0.72997	0.00036301	-0.82371	-0.00040962	-0.093738	-4.6614E-05	497.2838600740747	128.17	1.037	127.07	126.78	127.81	-1.0933					44	20	3	0	0	0	0.41408	1	10082	10082		66.429	24.033	1	77491			53928	1184	44581	44617	58741	58741					0.05767224728754172
SLLPEGPPAI	10	Unmodified	_SLLPEGPPAI_					0	0	0		nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1	nc|ENSG00000051108|Q15011-4|HERPUD1	nc|ENSG00000051108|Q15011-4|HERPUD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.284423828125	2	497.2844	992.554247	0.084123	4.1833E-05	-0.18407	-9.1537E-05	-0.099951	-4.9704E-05	497.28416477122204	128.44	1.1638	126.98	126.53	127.69	-1.4565					59	22	4	0	0	0	0.086943	2	12282	12271;12282		116.9	49.41	1	145190			53929	1184	44581	44617	58742;58743	58743					0.05767224728754172
SLLPEGPPAI	10	Unmodified	_SLLPEGPPAI_					0	0	0		nc|ENSG00000051108|Q15011-4|HERPUD1;nc|ENSG00000051108|Q15011-2|HERPUD1;ENSG00000051108|ENST00000439977|HERPUD1;nc|ENSG00000051108|Q15011-3|HERPUD1	nc|ENSG00000051108|Q15011-4|HERPUD1	nc|ENSG00000051108|Q15011-4|HERPUD1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	497.2844	992.554247	0.95067	0.00047275	-1.042	-0.00051818	-0.091353	-4.5429E-05	497.2836691977223	127.42	1.2837	127.18	126.64	127.92	-0.2359	0.10153	-0.00032175	NaN	116.9	53	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111550			53930	1184	44581	44617							0.05767224728754172
SLLPFYLN	8	Unmodified	_SLLPFYLN_					0	0	0			REV__ENST00000472200.1_1_3:136538525-136538843:+|nuORF	REV__ENST00000472200.1_1_3:136538525-136538843:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	483.2935791015625	2	483.768386	965.522219	-0.81563	-0.00039458	-2.4328	-0.0011769	-3.2484	-0.0015715	483.7670091683692	90.473	0.66591	88.392	88.056	88.722	-2.0805					22	12	2	0	0	0	0.028476	1	5609	5609		44.531	11.015	1	27027	+		53931	26306	44582	44618	58744	58744					0.038078570456150374
SLLPFYLN	8	Unmodified	_SLLPFYLN_					0	0	0			REV__ENST00000472200.1_1_3:136538525-136538843:+|nuORF	REV__ENST00000472200.1_1_3:136538525-136538843:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	483.768386	965.522219	3.4107	0.00165	-5.2304	-0.0025303	-1.8197	-0.0008803	483.765763582925	88.093	0.67317	88.093	87.794	88.467	0	-0.14949	-0.0012893	NaN	26.796	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233650	+		53932	26306	44582	44618							0.038078570456150374
SLLPGIRDL	9	Unmodified	_SLLPGIRDL_					0	0	0		ENST00000530514.5_1_17:45668242-45699283:+|nuORF;nc|ENSG00000141279|P55786-2|NPEPPS;ENSG00000141279|ENST00000322157|NPEPPS;ENST00000531486.1_1_17:45681241-45696545:+|nuORF	ENST00000530514.5_1_17:45668242-45699283:+|nuORF	ENST00000530514.5_1_17:45668242-45699283:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	492.3179626464844	2	492.297842	982.581131	-0.50282	-0.00024754	0.79115	0.00038948	0.28833	0.00014194	492.2979887562517	98.584	1.3369	96.855	96.396	97.733	-1.7291					50	25	3	0	0	0	0.027353	1	6623	6623		82.241	0	1	378280			53933	4903	44583	44619	58745	58745					0.08914333339930636
SLLPLRVLL	9	Unmodified	_SLLPLRVLL_					0	0	0		ENST00000397901.7_1_16:89720316-89724043:-|nuORF	ENST00000397901.7_1_16:89720316-89724043:-|nuORF	ENST00000397901.7_1_16:89720316-89724043:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	512.3512573242188	2	512.349877	1022.6852	0.89715	0.00045965	1.048	0.00053692	1.9451	0.00099657	512.3502792852095	142.3	0.94797	142.3	141.93	142.88	0					41	18	4	0	0	0	0.24951	1	16628	16628		68.787	29.981	1	285210			53934	11358	44584	44620	58746	58746					0.1747666016748326
SLLPPDALVGL	11	Unmodified	_SLLPPDALVGL_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B;SEC23B|p.N596Lfs*20|1|0.21|ENSG00000101310|chr20:18548647-18548648|-/TT|frameshift_variant	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	OvCa99_classI_Rep5	1	547.8271484375	2	547.826432	1093.63831	0.72609	0.00039777	1.354	0.00074177	2.0801	0.0011395	547.8270506208329	157.88	1.793	157.88	157.1	158.89	0					98	36	3	0	0	0	0.5466	1	18488	18488		49.536	5.1589	1	253440			53935	2163	44585	44621	58747	58747					0.0952375582564855
SLLPPDALVGL	11	Unmodified	_SLLPPDALVGL_					0	0	0		ENSG00000101310|ENST00000650089|SEC23B;SEC23B|p.N596Lfs*20|1|0.21|ENSG00000101310|chr20:18548647-18548648|-/TT|frameshift_variant	ENSG00000101310|ENST00000650089|SEC23B	ENSG00000101310|ENST00000650089|SEC23B	MULTI-MSMS	OvCa9_classI_Rep2	2	547.82666015625	2	547.826432	1093.63831	-3.828	-0.0020971	3.7571	0.0020582	-0.070918	-3.8851E-05	547.8283345690601	154.13	2.0065	153.91	153.15	155.16	-0.22697					93	45	3	0	0	0	0.68021	3	15708	15708;15714;15725		36.447	8.3578	1	59433			53936	2163	44585	44621	58748;58749;58750	58748					0.0952375582564855
SLLPPTALVGL	11	Unmodified	_SLLPPTALVGL_					0	0	0		ENSG00000100934|ENST00000307712|SEC23A;ENST00000555682.1_1_14:39560581-39561747:-|nuORF	ENSG00000100934|ENST00000307712|SEC23A	ENSG00000100934|ENST00000307712|SEC23A	MULTI-MSMS	OvCa99_classI_Rep5	1	540.8341674804688	2	540.8368	1079.65905	0.70001	0.00037859	0.82904	0.00044837	1.529	0.00082696	540.8371015473006	159.34	2.4019	159.34	158.56	160.96	0					114	48	3	0	0	0	0.26031	5	18709	18642;18675;18709;18733;18759		71.877	11.816	1	163460			53937	2123	44586	44622	58751;58752;58753;58754;58755	58753					0.1224034620531711
SLLPTSPRL	9	Unmodified	_SLLPTSPRL_					0	0	0		nc|ENSG00000112983|Q9H0E9-3|BRD8;nc|ENSG00000112983|Q9H0E9-4|BRD8;nc|ENSG00000112983|Q9H0E9-2|BRD8	nc|ENSG00000112983|Q9H0E9-3|BRD8	nc|ENSG00000112983|Q9H0E9-3|BRD8	MULTI-MSMS	OvCa99_classI_Rep5	1	492.29974365234375	2	492.297842	982.581131	3.1214	0.0015366	-0.93154	-0.0004586	2.1898	0.001078	492.29725028513167	97.455	0.9856	97.455	97.18	98.165	0					58	22	4	0	0	0	0.3249	1	10705	10705		60.118	1.8883	1	4331600			53938	14964	44587	44623	58756	58756					0.08914333339930636
SLLQAPSLI	9	Unmodified	_SLLQAPSLI_					0	0	0			REV__nc|ENSG00000115705|P07202-6|TPO	REV__nc|ENSG00000115705|P07202-6|TPO	MULTI-MSMS	OvCa99_classI_Rep5	1	471.28790283203125	2	471.286943	940.559333	0.39577	0.00018652	0.059333	2.7963E-05	0.45511	0.00021449	471.2868394335814	72.34	7.0488	72.34	69.552	76.6	0					308	176	2	0	0	0	0.14855	1	6935	6935		85.161	2.8558	1	3030900	+		53939	18265	44588	44624	58757	58757					0.0866752859137705
SLLQDGERL	9	Unmodified	_SLLQDGERL_					0	0	0			REV__AHNAK2|p.F3808Sfs*30|1|0.04|ENSG00000185567|chr14:104944028-104944028|A/-|frameshift_variant	REV__AHNAK2|p.F3808Sfs*30|1|0.04|ENSG00000185567|chr14:104944028-104944028|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	515.7791748046875	2	515.780013	1029.54547	-1.0262	-0.00052928	0.64822	0.00033434	-0.37795	-0.00019494	515.7803629256006	42.002	0.94321	42.002	41.766	42.709	0					34	21	2	0	0	0	0.3076	1	2687	2687		62.107	0	1	5651100	+		53940	15581	44589	44625	58758	58758					0.03188251092274186
SLLQILWKG	9	Unmodified	_SLLQILWKG_					0	0	0		ENSG00000019186|ENST00000216862|CYP24A1;nc|ENSG00000019186|Q07973-2|CYP24A1;ENST00000472970.1_1_20:52789446-52789947:-|nuORF	ENSG00000019186|ENST00000216862|CYP24A1	ENSG00000019186|ENST00000216862|CYP24A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.3432006835938	2	529.32386	1056.63317	1.1963	0.00063325	1.3057	0.00069116	2.5021	0.0013244	529.3245783487835	146.37	0.44109	146.37	146.18	146.62	0					13	8	2	0	0	0	0.027462	1	17102	17102		6.7355	0	1	51414			53941	1017	44590	44626	58759	58759					0.10711496753719985
SLLQNPPTV	9	Unmodified	_SLLQNPPTV_					0	0	0		nc|ENSG00000019102|Q96IQ7-2|VSIG2;ENSG00000019102|ENST00000326621|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	nc|ENSG00000019102|Q96IQ7-2|VSIG2	MULTI-MSMS	OvCa9_classI_Rep2	2	484.7740173339844	2	484.7742	967.533846	1.046	0.00050707	-1.5483	-0.00075059	-0.50234	-0.00024352	484.77344610274326	91.377	2.4981	90.141	89.488	91.987	-1.2355					132	47	4	0	0	0	0.16524	1	8153	8153		82.305	2.854	1	3844000			53942	1015	44591	44627	58760	58760					0.04878054068956317
SLLQTLYKV	9	Unmodified	_SLLQTLYKV_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	532.8240356445312	2	532.82115	1063.62775	1.3647	0.00072713	0.80651	0.00042972	2.1712	0.0011568	532.8214085854088	113.9	0.72277	113.9	113.66	114.38	0					35	15	3	0	0	0	0.14445	1	12994	12994		85.862	18.368	1	948700			53943	2063	44592	44628	58761	58761					0.09847773171213703
SLLQTLYKV	9	Unmodified	_SLLQTLYKV_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.8211059570312	2	532.82115	1063.62775	-0.71536	-0.00038116	-0.14523	-7.7384E-05	-0.8606	-0.00045855	532.8208748491254	115.49	1.0886	114.09	113.82	114.91	-1.3977					40	21	3	0	0	0	0.17606	1	10756	10756		80.455	29.262	1	138760			53944	2063	44592	44628	58762	58762					0.09847773171213703
SLLQTLYKV	9	Unmodified	_SLLQTLYKV_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	532.82115	1063.62775	-0.90199	-0.0004806	0.36327	0.00019356	-0.53872	-0.00028704	532.8211295114188	114.13	0.93668	114.01	113.76	114.7	-0.11777	-0.041897	0.00027153	NaN	85.862	42	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112880			53945	2063	44592	44628							0.09847773171213703
SLLQTLYKV	9	Unmodified	_SLLQTLYKV_					0	0	0		ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	ENSG00000100401|ENST00000356244|RANGAP1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	532.82115	1063.62775	0.15756	8.3952E-05	-0.98469	-0.00052467	-0.82713	-0.00044071	532.8202586768866	115.26	1.1349	114.2	113.9	115.03	-1.055	0.14885	-0.0011649	NaN	85.862	48	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88096			53946	2063	44592	44628							0.09847773171213703
SLLRHLEKV	9	Unmodified	_SLLRHLEKV_					0	0	0		nc|ENSG00000171992|Q8N3V7-3|SYNPO;ENSG00000171992|ENST00000307662|SYNPO;nc|ENSG00000171992|Q8N3V7|SYNPO	nc|ENSG00000171992|Q8N3V7-3|SYNPO	nc|ENSG00000171992|Q8N3V7-3|SYNPO	MULTI-MSMS	OvCa99_classI_Rep5	1	547.8396606445312	2	547.837665	1093.66078	-0.26308	-0.00014412	0.056384	3.0889E-05	-0.20669	-0.00011323	547.8376456112904	58.551	1.0176	58.551	58.322	59.34	0					56	25	4	0	0	0	0.18887	1	4975	4975		78.264	25.327	1	3214800			53947	7258	44593	44629	58763	58763					0.1176940001391813
SLLRNVQSVI	10	Unmodified	_SLLRNVQSVI_					0	0	0		nc|ENSG00000108506|Q9H0H0|INTS2;ENSG00000108506|ENST00000251334|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-SECPEP	OvCa9_classI_Rep2	2	564.3241577148438	2	564.840405	1127.66626	-1.0684	-0.00060348	2.0256	0.0011441	0.95715	0.00054064	564.8409656981024	101.64	0.49571	100.88	100.72	101.21	-0.76401					15	9	2	0	0	0	0.026624	1	9341	9341		63.534	25.722	1	17650			53948	2658	44594	44630	58764	58764					0.10753078805760197
SLLRRGPP	8	Unmodified	_SLLRRGPP_					0	0	0		ENST00000607927.1_1_22:18560886-18561522:-|nuORF	ENST00000607927.1_1_22:18560886-18561522:-|nuORF	ENST00000607927.1_1_22:18560886-18561522:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	448.2773132324219	2	448.277244	894.539935	1.0889	0.00048813	-0.80337	-0.00036013	0.28553	0.000128	448.2767184820242	67.307	1.1511	64.42	64.187	65.338	-2.8873					44	22	3	0	0	0	0.74679	1	2853	2853		28.254	4.0515	1	85921			53949	14290	44595	44631	58765	58765					0.08844617091142482
SLLRRLRP	8	Unmodified	_SLLRRLRP_					0	0	0		ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	ENSG00000130158|ENST00000294618|DOCK6	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.81121826171875	2	505.832717	1009.65088	-0.91167	-0.00046115	3.0429	0.0015392	2.1312	0.001078	505.83417677211963	88.609	2.508	86.478	85.803	88.311	-2.1309					97	49	4	0	0	0	0.028476	1	5476	5476		42.396	5.237	1	287930			53950	3959	44596	44632	58766	58766					0.14644256799226696
SLLRSIFTV	9	Unmodified	_SLLRSIFTV_					0	0	0		ENSG00000108773|ENST00000225916|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	ENSG00000108773|ENST00000225916|KAT2A	MULTI-MSMS	OvCa99_classI_Rep5	1	518.3154296875	2	518.313492	1034.61243	1.3637	0.00070682	-0.33463	-0.00017344	1.0291	0.00053338	518.3130207290661	125.6	0.5982	125.6	125.39	125.99	0					25	13	3	0	0	0	0.060996	1	14523	14523		112.41	27.25	1	811590			53951	2673	44597	44633	58767	58767					0.09650906374031365
SLLSAKLQPV	10	Unmodified	_SLLSAKLQPV_					0	0	0			REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MSMS	OvCa9_classI_Rep3	3	528.330078125	2	528.326599	1054.63865	0.33475	0.00017686	3.4023	0.0017975	3.7371	0.0019744	528.3282724916941	128.79	3.3005	127.69	127.27	130.57	-1.0933					188	66	4	0	0	0	0.62299	1	10334	10334		39.253	0	1	235110	+		53952	19513	44598	44634	58768	58768					0.11351175545519254
SLLSEKSLL	9	Unmodified	_SLLSEKSLL_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.2979736328125	2	495.297507	988.580462	0.62327	0.0003087	-1.1454	-0.00056733	-0.52216	-0.00025862	495.296795507755	89.52	1.9685	86.945	86.656	88.624	-2.575					102	38	4	0	0	0	0.083631	2	7732	7706;7732		101.6	2.995	1	1899800	+		53953	28942;32737	44599	44635	58769;58770	58770					0.08571493900251426
SLLSELQHA	9	Unmodified	_SLLSELQHA_					0	0	0		ENST00000471171.1_1_1:89726389-89727847:-|nuORF;ENST00000481145.1_1_1:89726389-89728307:-|nuORF;ENSG00000154451|ENST00000370459|GBP5	ENST00000471171.1_1_1:89726389-89727847:-|nuORF	ENST00000471171.1_1_1:89726389-89727847:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	499.2709045410156	2	499.269281	996.52401	1.7259	0.0008617	0.635	0.00031704	2.3609	0.0011787	499.2694473295909	101.21	1.1397	101.21	100.9	102.04	0					58	26	4	0	0	0	0.012163	2	11261	11232;11261		161.9	0	1	6295300			53954	5738	44600	44636	58771;58772	58772					0.02560866063561207
SLLSELQHA	9	Unmodified	_SLLSELQHA_					0	0	0		ENST00000471171.1_1_1:89726389-89727847:-|nuORF;ENST00000481145.1_1_1:89726389-89728307:-|nuORF;ENSG00000154451|ENST00000370459|GBP5	ENST00000471171.1_1_1:89726389-89727847:-|nuORF	ENST00000471171.1_1_1:89726389-89727847:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	499.2696533203125	2	499.269281	996.52401	-1.2862	-0.00064218	1.5117	0.00075472	0.22541	0.00011254	499.26986797855596	102.4	1.0856	101.71	101.39	102.48	-0.68459					47	21	3	0	0	0	0.059253	2	9421	9421;9427		113.41	0	1	252040			53955	5738	44600	44636	58773;58774	58773					0.02560866063561207
SLLSELQHA	9	Unmodified	_SLLSELQHA_					0	0	0		ENST00000471171.1_1_1:89726389-89727847:-|nuORF;ENST00000481145.1_1_1:89726389-89728307:-|nuORF;ENSG00000154451|ENST00000370459|GBP5	ENST00000471171.1_1_1:89726389-89727847:-|nuORF	ENST00000471171.1_1_1:89726389-89727847:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.2688903808594	2	499.269281	996.52401	-0.80634	-0.00040258	1.2315	0.00061486	0.42517	0.00021228	499.269742166784	103.96	1.0507	101.84	101.54	102.59	-2.1192					30	19	2	0	0	0	0.16264	2	9394	9394;9407		82.75	0	1	268230			53956	5738	44600	44636	58775;58776	58775					0.02560866063561207
SLLSGGERAL	10	Unmodified	_SLLSGGERAL_					0	0	0		tr|A0A553SP32|A0A553SP32_NIACIChromosomepartitionproteinSmcOS=NialliacirculansOX=1397GN=smcPE=3SV=1	tr|A0A553SP32|A0A553SP32_NIACIChromosomepartitionproteinSmcOS=NialliacirculansOX=1397GN=smcPE=3SV=1	tr|A0A553SP32|A0A553SP32_NIACIChromosomepartitionproteinSmcOS=NialliacirculansOX=1397GN=smcPE=3SV=1	MSMS	OvCa9_classI_Rep4_	4	501.7825622558594	2	501.782556	1001.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.311	1	65.829	65.329	66.329	-3.4812								0	0	0	0.15165	1	5183	5183		47.96	6.5329	1				53957	33998	44601	44637	58777	58777					0.04984554954910436
SLLSGIQHI	9	Unmodified	_SLLSGIQHI_					0	0	0			REV__ENST00000483778.5_1_2:242577129-242598587:+|nuORF	REV__ENST00000483778.5_1_2:242577129-242598587:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.2830810546875	2	484.282192	966.549831	-1.0933	-0.00052948	-0.092149	-4.4626E-05	-1.1855	-0.0005741	484.28193808882077	45.088	1.974	42.049	41.663	43.637	-3.0385					79	37	3	0	0	0	0.16524	1	2278	2278		82.305	8.3303	1	563070	+		53958	26537	44602	44638	58778	58778					0.06521760305861335
SLLSHVEQL	9	Unmodified	_SLLSHVEQL_					0	0	0		chr1:11676135-11676848|121|35.23|0.64|5.79|-|2|None,MAD2L2|1;ENSG00000116670|ENST00000376692|MAD2L2;ENST00000376664.10_1_1:11735929-11741152:-|nuORF	chr1:11676135-11676848|121|35.23|0.64|5.79|-|2|None,MAD2L2|1	chr1:11676135-11676848|121|35.23|0.64|5.79|-|2|None,MAD2L2|1	MULTI-MSMS	OvCa99_classI_Rep5	1	513.2896118164062	2	513.284931	1024.55531	2.2752	0.0011678	0.065433	3.3586E-05	2.3406	0.0012014	513.2848060263815	99.578	1.0445	99.578	99.236	100.28	0					40	24	2	0	0	0	0.026923	1	11006	11006		138.83	42.635	1	3315500			53959	238	44603	44639	58779	58779					0.04401439097682669
SLLSLVTGLK	10	Unmodified	_SLLSLVTGLK_					0	0	0		ENST00000462917.1_1_17:39847120-39847177:+|nuORF	ENST00000462917.1_1_17:39847120-39847177:+|nuORF	ENST00000462917.1_1_17:39847120-39847177:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	515.828125	2	515.828975	1029.6434	0.48529	0.00025033	-0.96586	-0.00049822	-0.48057	-0.00024789	515.8284227600024	132.78	1.9202	132.55	132.23	134.15	-0.22696					116	38	5	0	0	0	4.5772E-07	17	13113	13099;13102;13107;13113;13119;13125;13131;13137;13143;13149;13156;13162;13168;13176;13188;13194;13225		204.62	47.296	1	1299600			53960	12215	44604	44640	58780;58781;58782;58783;58784;58785;58786;58787;58788;58789;58790;58791;58792;58793;58794;58795;58796	58783					0.1297605968827611
SLLSLVTGLK	10	Unmodified	_SLLSLVTGLK_					0	0	0		ENST00000462917.1_1_17:39847120-39847177:+|nuORF	ENST00000462917.1_1_17:39847120-39847177:+|nuORF	ENST00000462917.1_1_17:39847120-39847177:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	515.8292236328125	2	515.828975	1029.6434	0.047341	2.442E-05	-0.33086	-0.00017066	-0.28352	-0.00014625	515.8287151259711	133.92	2.3165	132.79	132.47	134.79	-1.1226					129	46	5	0	0	0	0.0017528	19	10810	10752;10757;10762;10767;10772;10778;10784;10790;10796;10802;10810;10815;10821;10827;10833;10839;10852;10858;10864		172.25	62.77	1	885720			53961	12215	44604	44640	58797;58798;58799;58800;58801;58802;58803;58804;58805;58806;58807;58808;58809;58810;58811;58812;58813;58814;58815	58807					0.1297605968827611
SLLSLVTGLK	10	Unmodified	_SLLSLVTGLK_					0	0	0		ENST00000462917.1_1_17:39847120-39847177:+|nuORF	ENST00000462917.1_1_17:39847120-39847177:+|nuORF	ENST00000462917.1_1_17:39847120-39847177:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.8282470703125	2	515.828975	1029.6434	2.9454	0.0015193	-3.4073	-0.0017576	-0.46192	-0.00023827	515.8271563507058	134.24	2.5208	132.72	132.39	134.91	-1.5257					147	50	5	0	0	0	0.0030581	12	12971	12951;12959;12971;12983;12995;13007;13019;13031;13043;13055;13080;13093		168.26	34.79	1	1356000			53962	12215	44604	44640	58816;58817;58818;58819;58820;58821;58822;58823;58824;58825;58826;58827	58818					0.1297605968827611
SLLSSVFKL	9	Unmodified	_SLLSSVFKL_					0	0	0		ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	MULTI-MSMS	OvCa99_classI_Rep5	1	497.3047790527344	2	497.302593	992.590633	1.833	0.00091157	0.14059	6.9917E-05	1.9736	0.00098148	497.3025444252968	136.46	0.52254	136.46	136.25	136.77	0					23	10	3	0	0	0	0.37135	1	15908	15908		54.776	10.66	1	136580			53963	4225	44605	44641	58828	58828					0.09404101625477779
SLLSYLEQL	9	Unmodified	_SLLSYLEQL_					0	0	0			REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	REV__nc|ENSG00000131778|Q86WJ1-4|CHD1L	MULTI-MSMS	OvCa99_classI_Rep5	1	533.2943725585938	2	533.294965	1064.57538	0.6645	0.00035437	0.79673	0.00042489	1.4612	0.00077927	533.2951607112735	159.9	0.59543	159.9	159.71	160.31	0					24	11	3	0	0	0	0.22035	1	18746	18746		72.879	0	1	129350	+		53964	19033	44606	44642	58829	58829					0.04567190037596447
SLLTDPRSSR	10	Unmodified	_SLLTDPRSSR_					0	0	0			REV__ENSG00000166963|ENST00000300231|MAP1A	REV__ENSG00000166963|ENST00000300231|MAP1A	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.3121337890625	2	566.309469	1130.60439	-0.13049	-7.3899E-05	3.3123	0.0018758	3.1818	0.0018019	566.3112007083625	106.59	1.2951	104.68	104.41	105.71	-1.9115					55	21	3	0	0	0	0.50999	1	9725	9725		52.937	8.5595	1	326300	+		53965	21242	44607	44643	58830	58830					0.04430727386602484
SLLTVTGSNTY	11	Unmodified	_SLLTVTGSNTY_					0	0	0			REV__ENSG00000139117|ENST00000331366|CPNE8	REV__ENSG00000139117|ENST00000331366|CPNE8	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.2914428710938	2	578.298236	1154.58192	-0.9107	-0.00052665	3.0912	0.0017876	2.1805	0.001261	578.2998477716817	82.758	2.0258	80.075	79.684	81.71	-2.683					111	41	5	0	0	0	0.50761	1	6869	6869		53.089	8.7118	1	545120	+		53966	19587	44608	44644	58831	58831					0.010810831983462776
SLLTVTGSNTY	11	Unmodified	_SLLTVTGSNTY_					0	0	0			REV__ENSG00000139117|ENST00000331366|CPNE8	REV__ENSG00000139117|ENST00000331366|CPNE8	MULTI-MATCH	OvCa9_classI_Rep2	2		2	578.298236	1154.58192	-0.11051	-6.391E-05	2.6891	0.0015551	2.5786	0.0014912	578.2996450279288	81.771	1.5034	80.122	79.665	81.169	-1.6485	-0.018569	-0.0001411	NaN	53.089	83	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	361210	+		53967	19587	44608	44644							0.010810831983462776
SLLTVTGSNTY	11	Unmodified	_SLLTVTGSNTY_					0	0	0			REV__ENSG00000139117|ENST00000331366|CPNE8	REV__ENSG00000139117|ENST00000331366|CPNE8	MULTI-MATCH	OvCa9_classI_Rep3	3		2	578.298236	1154.58192	-1.823	-0.0010542	3.0606	0.0017699	1.2376	0.0007157	578.2995115091445	82.522	2.0097	80.225	79.836	81.846	-2.2963	0.084506	0.00028854	NaN	53.089	110	41	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	577560	+		53968	19587	44608	44644							0.010810831983462776
SLLVAATVSV	10	Unmodified	_SLLVAATVSV_					0	0	0		tr|A0A7D6VP63|A0A7D6VP63_9CLOTMetalABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17520PE=3SV=1	tr|A0A7D6VP63|A0A7D6VP63_9CLOTMetalABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17520PE=3SV=1	tr|A0A7D6VP63|A0A7D6VP63_9CLOTMetalABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17520PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.7367248535156	2	480.292225	958.569897	2.2357	0.0010738	-0.15551	-7.469E-05	2.0802	0.00099908	480.29189068472385	95.28	0.71529	95.28	94.861	95.577	0					31	16	3	0	0	0	0.026493	1	10374	10374		45.972	0	1	515880			53969	34752	44609	44645	58832	58832					0.08895511245816579
SLLVAMERSL	10	Unmodified	_SLLVAMERSL_					0	0	0		WDFY3|p.Q3037Rfs*34|1|0.06|ENSG00000163625|chr4:84691725-84691725|T/-|frameshift_variant;WDFY3|p.S3365Qfs*9|1|0.07|ENSG00000163625|chr4:84678973-84678974|-/G|frameshift_variant;nc|ENSG00000163625|Q8IZQ1-2|WDFY3;ENSG00000163625|ENST00000295888|WDFY3;ENST00000426414.6_1_4:85730999-85781744:-|nuORF	WDFY3|p.Q3037Rfs*34|1|0.06|ENSG00000163625|chr4:84691725-84691725|T/-|frameshift_variant	WDFY3|p.Q3037Rfs*34|1|0.06|ENSG00000163625|chr4:84691725-84691725|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	559.8184814453125	2	559.815541	1117.61653	2.0742	0.0011611	0.1249	6.9922E-05	2.1991	0.0012311	559.8156915922438	133.1	8.2265	133.1	132.6	140.83	0					464	175	6	0	0	0	0.59317	1	16446	16446		42.864	5.7052	1	47573000			53970	36302	44610	44646	58833	58833					0.06242627805431766
SLLVEPIL	8	Unmodified	_SLLVEPIL_					0	0	0			REV__ENSG00000184814|ENST00000329447|PRR23B	REV__ENSG00000184814|ENST00000329447|PRR23B	MULTI-SECPEP	OvCa9_classI_Rep3	3	441.79205322265625	2	442.278586	882.54262	-0.16789	-7.4256E-05	3.33	0.0014728	3.1621	0.0013985	442.2798534809949	99.892	0.26357	98.207	97.985	98.248	-1.685					6	4	2	0	0	0	0.028476	1	6745	6745		31.955	0	1	4059	+		53971	22451	44611	44647	58834	58834					0.09665027705432294
SLLWRKGEII	10	Unmodified	_SLLWRKGEII_					0	0	0		ENST00000342081.7_1_4:74477471-74486347:-|nuORF	ENST00000342081.7_1_4:74477471-74486347:-|nuORF	ENST00000342081.7_1_4:74477471-74486347:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	608.3701171875	2	607.866423	1213.71829	2.4989	0.001519	-1.4836	-0.00090184	1.0153	0.00061718	608.3656156866059	115.59	1.3886	115.59	115.25	116.64	0					56	29	3	0	0	0	0.52439	1	13191	13191		51.193	5.2204	1	377720			53972	10574	44612	44648	58835	58835					0.11998242219533495
SLLYNVPAV	9	Unmodified	_SLLYNVPAV_					0	0	0		nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP;nc|ENSG00000142192|P05067-11|APP	nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-11|APP	nc|ENSG00000142192|P05067-10|APP	MULTI-MSMS	OvCa9_classI_Rep3	3	488.2782897949219	2	488.279118	974.543683	1.0822	0.0005284	-1.6984	-0.0008293	-0.61624	-0.0003009	488.2781012195077	125.66	0.93433	124.6	124.37	125.3	-1.0519					28	17	2	0	0	0	0.14998	1	9787	9787		84.916	8.1414	1	75213			53973	4960;15068	44613	44649	58836	58836					0.05539242074326012
SLLYNVPAV	9	Unmodified	_SLLYNVPAV_					0	0	0		nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-3|APP;nc|ENSG00000142192|P05067-4|APP;nc|ENSG00000142192|P05067-5|APP;nc|ENSG00000142192|P05067-6|APP;nc|ENSG00000142192|P05067-7|APP;nc|ENSG00000142192|P05067-8|APP;nc|ENSG00000142192|P05067-9|APP;ENSG00000142192|ENST00000346798|APP;nc|ENSG00000142192|P05067-11|APP	nc|ENSG00000142192|P05067-10|APP;nc|ENSG00000142192|P05067-11|APP	nc|ENSG00000142192|P05067-10|APP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	488.279118	974.543683	0.75044	0.00036643	-1.3946	-0.00068096	-0.64416	-0.00031453	488.27823742952944	124.93	1.0376	124.69	124.37	125.41	-0.2359	0.082829	-0.0017965	NaN	84.916	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62316			53974	4960;15068	44613	44649							0.05539242074326012
SLMCMFAVI	9	Unmodified	_SLMCMFAVI_					0	0	0			REV__KCNV1|p.I413M|1|0.06|ENSG00000164794|chr8:109968352-109968352|T/C|missense_variant	REV__KCNV1|p.I413M|1|0.06|ENSG00000164794|chr8:109968352-109968352|T/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.81390380859375	2	507.744685	1013.47482	-0.36112	-0.00018336	3.8776	0.0019689	3.5165	0.0017855	507.7465179275257	57.916	1.2586	54.571	54.189	55.447	-3.3449					47	24	3	0	0	0	0.027373	1	3793	3793		71.378	1.7503	1	220050	+		53975	28328	44614	44650	58837	58837					-0.031382048128875795
SLMDRPLCE	9	Unmodified	_SLMDRPLCE_					0	0	0		nc|ENSG00000005156|P49916-4|LIG3;nc|ENSG00000005156|P49916-3|LIG3;nc|ENSG00000005156|P49916-2|LIG3;ENSG00000005156|ENST00000378526|LIG3	nc|ENSG00000005156|P49916-4|LIG3	nc|ENSG00000005156|P49916-4|LIG3	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.8072509765625	2	532.249177	1062.4838	0.44155	0.00023502	-1.2304	-0.00065491	-0.7889	-0.00041989	532.2478292970374	110.03	0.94567	108.88	108.61	109.56	-1.1444					26	17	2	0	0	0	0.027462	1	7915	7915		25.574	9.9322	1	29044			53976	845	44615	44651	58838	58838					-0.04494139922871909
SLMGVTKYFP	10	Unmodified	_SLMGVTKYFP_					0	0	0			REV__nc|ENSG00000114573|P38606-2|ATP6V1A	REV__nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	570.8187866210938	2	571.79936	1141.58417	-1.938	-0.0011082	0.45871	0.00026229	-1.4793	-0.00084586	572.3017125574676	125.47	0.66035	124.05	123.73	124.39	-1.4143					19	12	2	0	0	0	0.026849	1	11914	11914		40.778	3.6191	1	12819	+		53977	18193	44616	44652	58839	58839					0.019038404024286137
SLMGVTKYFP	10	Unmodified	_SLMGVTKYFP_					0	0	0			REV__nc|ENSG00000114573|P38606-2|ATP6V1A	REV__nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	571.79936	1141.58417	-0.5043	-0.00028836	-1.3675	-0.00078195	-1.8718	-0.0010703	571.7976541394341	124.04	0.64113	123.8	123.58	124.22	-0.23193	-0.15652	0.0007812	NaN	40.778	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13031	+		53978	18193	44616	44652							0.019038404024286137
SLMGVTKYFP	10	Unmodified	_SLMGVTKYFP_					0	0	0			REV__nc|ENSG00000114573|P38606-2|ATP6V1A	REV__nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	571.79936	1141.58417	1.0841	0.00061989	-4.0633	-0.0023234	-2.9792	-0.0017035	572.2983422142136	125.08	0.78543	124.03	123.69	124.47	-1.0519	0.066892	-0.0023017	NaN	40.778	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16716	+		53979	18193	44616	44652							0.019038404024286137
SLMHSFILK	9	Oxidation (M)	_SLM(Oxidation (M))HSFILK_		SLM(1)HSFILK		SLM(62)HSFILK	0	0	1		ITGB3-DYNLRB1|1|fusion;ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ITGB3-DYNLRB1|1|fusion	ITGB3-DYNLRB1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	546.2987670898438	2	546.299527	1090.5845	0.30057	0.0001642	-0.51805	-0.00028301	-0.21747	-0.00011881	546.299131416862	71.966	2.0363	69.459	68.91	70.946	-2.5071					90	38	3	0	0	0	0.3076	1	5814	5814		62.107	10.772	1	614650			53980	14509	44617	44653	58840	58840		362			0.042832601222926314
SLMHSFILK	9	Oxidation (M)	_SLM(Oxidation (M))HSFILK_		SLM(1)HSFILK		SLM(130)HSFILK	0	0	1		ITGB3-DYNLRB1|1|fusion;ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ITGB3-DYNLRB1|1|fusion	ITGB3-DYNLRB1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	546.300537109375	2	546.299527	1090.5845	-0.15153	-8.2783E-05	-0.079566	-4.3467E-05	-0.2311	-0.00012625	546.2993129714353	72.1	2.7232	69.498	68.832	71.555	-2.6023					128	54	4	0	0	0	0.035142	5	3416	3405;3410;3416;3423;3429		131.03	38.919	1	794830			53981	14509	44617	44653	58841;58842;58843;58844;58845	58843		362			0.042832601222926314
SLMHSFILK	9	Oxidation (M)	_SLM(Oxidation (M))HSFILK_		SLM(1)HSFILK		SLM(100)HSFILK	0	0	1		ITGB3-DYNLRB1|1|fusion;ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ITGB3-DYNLRB1|1|fusion	ITGB3-DYNLRB1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.29931640625	2	546.299527	1090.5845	-1.4715	-0.0008039	0.90029	0.00049183	-0.57124	-0.00031207	546.2998487866244	73.242	2.0645	69.846	69.253	71.317	-3.3961					107	42	4	0	0	0	0.083631	1	5667	5667		101.6	19.36	1	681930			53982	14509	44617	44653	58846	58846		362			0.042832601222926314
SLMHSFILK	9	Unmodified	_SLMHSFILK_					0	0	0		ITGB3-DYNLRB1|1|fusion;ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ITGB3-DYNLRB1|1|fusion	ITGB3-DYNLRB1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	538.3025512695312	2	538.30207	1074.58959	1.0046	0.00054076	-1.3796	-0.00074263	-0.37503	-0.00020188	538.3012420644196	89.249	1.7781	87.881	87.135	88.913	-1.3676					69	26	3	0	0	0	0.059253	4	7864	7841;7851;7864;7871		113.41	36.094	1	764200			53983	14509	44617	44654	58847;58848;58849;58850	58849					0.055275639849242
SLMHSFILK	9	Unmodified	_SLMHSFILK_					0	0	0		ITGB3-DYNLRB1|1|fusion;ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ITGB3-DYNLRB1|1|fusion	ITGB3-DYNLRB1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	538.3024291992188	2	538.30207	1074.58959	0.36189	0.00019481	-1.4074	-0.00075762	-1.0455	-0.00056282	538.3013786020978	90.322	1.8816	88.241	87.901	89.783	-2.0805					82	36	4	0	0	0	0.012163	7	5600	5600;5605;5611;5618;5624;5630;5635		161.9	48.487	1	977920			53984	14509	44617	44654	58851;58852;58853;58854;58855;58856;58857	58851					0.055275639849242
SLMHSFILK	9	Unmodified	_SLMHSFILK_					0	0	0		ITGB3-DYNLRB1|1|fusion;ENSG00000125971|ENST00000357156|DYNLRB1;ENST00000480759.1_1_20:33117938-33128425:+|nuORF	ITGB3-DYNLRB1|1|fusion	ITGB3-DYNLRB1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.303466796875	2	538.30207	1074.58959	-0.93072	-0.00050101	0.12424	6.6881E-05	-0.80647	-0.00043413	538.3020445298931	90.778	1.1745	88.203	87.904	89.079	-2.575					58	22	4	0	0	0	0.041116	5	7831	7822;7831;7844;7856;7868		125.81	18.807	1	739370			53985	14509	44617	44654	58858;58859;58860;58861;58862	58859					0.055275639849242
SLMHTIYEV	9	Unmodified	_SLMHTIYEV_					0	0	0		ENSG00000145506|ENST00000296849|NKD2;nc|ENSG00000145506|Q969F2-2|NKD2	ENSG00000145506|ENST00000296849|NKD2	ENSG00000145506|ENST00000296849|NKD2	MULTI-MSMS	OvCa99_classI_Rep5	1	546.7745971679688	2	546.773342	1091.53213	1.9713	0.0010778	-1.1418	-0.00062428	0.82951	0.00045355	546.7728038892749	96.946	0.8954	96.946	96.584	97.479	0					53	20	4	0	0	0	0.091859	2	10644	10620;10644		99.375	35.168	1	2709400			53986	5229	44618	44655	58863;58864	58864					-0.009973230113246245
SLMHTIYEV	9	Unmodified	_SLMHTIYEV_					0	0	0		ENSG00000145506|ENST00000296849|NKD2;nc|ENSG00000145506|Q969F2-2|NKD2	ENSG00000145506|ENST00000296849|NKD2	ENSG00000145506|ENST00000296849|NKD2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	546.773342	1091.53213	-0.29616	-0.00016193	-2.4931	-0.0013631	-2.7892	-0.0015251	546.7718717305363	98.143	1.2318	97.25	96.924	98.156	-0.89305	0.085346	-0.00069418	NaN	99.375	40	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46364			53987	5229	44618	44655							-0.009973230113246245
SLMHTIYEV	9	Unmodified	_SLMHTIYEV_					0	0	0		ENSG00000145506|ENST00000296849|NKD2;nc|ENSG00000145506|Q969F2-2|NKD2	ENSG00000145506|ENST00000296849|NKD2	ENSG00000145506|ENST00000296849|NKD2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	546.773342	1091.53213	-0.64673	-0.00035362	-2.282	-0.0012477	-2.9287	-0.0016014	546.7717901228451	98.94	1.0822	97.255	97.009	98.091	-1.685	0.089697	-0.00046336	NaN	99.375	44	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67230			53988	5229	44618	44655							-0.009973230113246245
SLMHTIYEV	9	Unmodified	_SLMHTIYEV_					0	0	0		ENSG00000145506|ENST00000296849|NKD2;nc|ENSG00000145506|Q969F2-2|NKD2	ENSG00000145506|ENST00000296849|NKD2	ENSG00000145506|ENST00000296849|NKD2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	546.773342	1091.53213	-1.107	-0.0006053	-1.7304	-0.00094616	-2.8375	-0.0015515	546.7721127608202	99.534	1.0728	97.209	96.899	97.971	-2.3253	0.043717	0.00013979	NaN	99.375	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59002			53989	5229	44618	44655							-0.009973230113246245
SLMICQSEI	9	Unmodified	_SLMICQSEI_					0	0	0			REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B	REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.2468872070312	2	512.246103	1022.47765	-0.8035	-0.00041159	0.5612	0.00028747	-0.24231	-0.00012412	512.2462674481686	80.15	1.369	77.439	77.027	78.396	-2.7106					56	27	3	0	0	0	0.21231	1	6533	6533		74.255	5.4682	1	373280	+		53990	17017	44619	44656	58865	58865					-0.03268658154388504
SLMICQSEI	9	Unmodified	_SLMICQSEI_					0	0	0			REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B	REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	512.246103	1022.47765	0.29039	0.00014875	-0.07851	-4.0216E-05	0.21188	0.00010853	512.2457387610282	79.342	1.4747	77.602	76.999	78.474	-1.7398	0.081442	-0.00028729	NaN	74.255	60	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85749	+		53991	17017	44619	44656							-0.03268658154388504
SLMLLHLNV	9	Unmodified	_SLMLLHLNV_					0	0	0			REV__ENST00000460143.1_1_2:143676251-143715440:+|nuORF	REV__ENST00000460143.1_1_2:143676251-143715440:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.7831420898438	2	520.30207	1038.58959	-0.5542	-0.00028835	4.1657	0.0021674	3.6115	0.0018791	520.3039438177505	20.317	0.30418	18.979	18.803	19.107	-1.3386					9	5	2	0	0	0	0.027462	1	35	35		29.15	0	1	11412	+		53992	18277	44620	44657	58866	58866					0.07183563984926877
SLMLVTALN	9	Unmodified	_SLMLVTALN_					0	0	0		ENSG00000091483|ENST00000366560|FH;nc|ENSG00000091483|P07954-2|FH;tr|A0A553SQ69|A0A553SQ69_NIACIFumaratehydrataseclassIIOS=NialliacirculansOX=1397GN=fumCPE=3SV=1	ENSG00000091483|ENST00000366560|FH	ENSG00000091483|ENST00000366560|FH	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2752990722656	2	481.272978	960.531403	2.6429	0.001272	-3.3698	-0.0016218	-0.72689	-0.00034983	481.27123512622586	86.707	0.4169	86.707	86.471	86.888	0					19	9	3	0	0	0	0.027461	1	9179	9179		49.442	0	1	279610			53993	1870	44621	44658	58867	58867					0.04955882339618256
SLMPKSLVI	9	Unmodified	_SLMPKSLVI_					0	0	0		tr|A0A553SLK3|A0A553SLK3_NIACIHDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20690PE=4SV=1	tr|A0A553SLK3|A0A553SLK3_NIACIHDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20690PE=4SV=1	tr|A0A553SLK3|A0A553SLK3_NIACIHDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20690PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	494.2874755859375	2	494.298996	986.583439	-1.24	-0.00061291	3.1416	0.0015529	1.9016	0.00093998	494.3005879446574	84.119	0.13674	81.858	81.745	81.881	-2.261					4	2	2	0	0	0	0.027295	1	4859	4859		74.255	7.8258	1	20366			53994	33732	44622	44659	58868	58868					0.08961045753392227
SLMSLTGLKSL	11	Unmodified	_SLMSLTGLKSL_					0	0	0		ENSG00000112877|ENST00000264935|CEP72;nc|ENSG00000112877|Q9P209-2|CEP72	ENSG00000112877|ENST00000264935|CEP72	ENSG00000112877|ENST00000264935|CEP72	MULTI-SECPEP	OvCa9_classI_Rep2	2	575.3090209960938	2	575.331024	1148.6475	-1.1033	-0.00063479	2.0671	0.0011893	0.96376	0.00055448	575.8330572009661	98.339	0.68911	97.446	97.168	97.857	-0.89305					21	13	3	0	0	0	0.020983	1	8914	8914		101.25	0	1	39032			53995	2935	44623	44660	58869	58869					0.07911781119673833
SLMVDRIF	8	Unmodified	_SLMVDRIF_					0	0	0		nc|ENSG00000166278|P06681-3|C2;ENSG00000166278|ENST00000299367|C2	nc|ENSG00000166278|P06681-3|C2	nc|ENSG00000166278|P06681-3|C2	MULTI-SECPEP	OvCa9_classI_Rep2	2	490.318115234375	2	490.76532	979.516088	0.14414	7.0738E-05	3.9898	0.001958	4.1339	0.0020288	490.76713475565384	46.331	0.44585	43.621	43.448	43.894	-2.7097					12	8	2	0	0	0	0.028476	1	2741	2741		40.573	0	1	21376			53996	6661	44624	44661	58870	58870					0.025510155424399272
SLMVFLRR	8	Unmodified	_SLMVFLRR_					0	0	0			REV__FANCA|p.E886Rfs*3|1|0.09|ENSG00000187741|chr16:89765012-89765012|C/-|frameshift_variant	REV__FANCA|p.E886Rfs*3|1|0.09|ENSG00000187741|chr16:89765012-89765012|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.84564208984375	2	511.302404	1020.59026	1.8138	0.00092738	3.7993	0.0019426	5.6131	0.00287	511.30427262808405	125.87	0.65334	125.87	125.57	126.23	0					34	13	3	0	0	0	0.028476	1	14553	14553		25.45	0	1	335300	+		53997	22659	44625	44662	58871	58871					0.08078403424622138
SLNAILFVY	9	Unmodified	_SLNAILFVY_					0	0	0			REV__ENST00000263398.10_1_11:35251130-35251223:+|nuORF	REV__ENST00000263398.10_1_11:35251130-35251223:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	520.2931518554688	2	520.294768	1038.57498	-0.96897	-0.00050415	-3.2495	-0.0016907	-4.2185	-0.0021949	520.2929878067442	117.73	1.1913	117.58	117.19	118.38	-0.14754					43	23	2	0	0	0	0.38529	1	11291	11291		53.351	5.6941	1	211520	+		53998	24000	44626	44663	58872	58872					0.057238151084447964
SLNEEINRL	9	Unmodified	_SLNEEINRL_					0	0	0		ENSG00000213512|ENST00000294671|GBP7	ENSG00000213512|ENST00000294671|GBP7	ENSG00000213512|ENST00000294671|GBP7	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.2913208007812	2	544.290745	1086.56694	-0.3848	-0.00020944	-1.2268	-0.00066776	-1.6116	-0.0008772	544.2907992656177	64.202	1.7412	60.727	60.061	61.802	-3.475					78	35	4	0	0	0	0.14855	1	4559	4559		85.161	2.4103	1	538640			53999	9131	44627	44664	58873	58873					0.027116361210119067
SLNFFFFFF	9	Unmodified	_SLNFFFFFF_					0	0	0		L1MCa_dup1455|chr3:161109768-161111719:+|1.3579652635712427|0.3175433071941228|2.1|429.0|120|3|anti-sense	L1MCa_dup1455|chr3:161109768-161111719:+|1.3579652635712427|0.3175433071941228|2.1|429.0|120|3|anti-sense	L1MCa_dup1455|chr3:161109768-161111719:+|1.3579652635712427|0.3175433071941228|2.1|429.0|120|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	405.8670349121094	3	405.867299	1214.58007	3.0031	0.0012189	-3.8125	-0.0015474	-0.80938	-0.0003285	405.8656502294352	58.999	2.532	55.873	55.114	57.646	-3.1264					157	70	3	0	0	0	0.68424	1	1897	1897		21.96	0.27414	1	158560			54000	14610	44628	44665	58874	58874					-0.018638810289758112
SLNFLRVSCF	10	Unmodified	_SLNFLRVSCF_					0	0	0		ENST00000506274.1_1_4:88140723-88140870:-|nuORF	ENST00000506274.1_1_4:88140723-88140870:-|nuORF	ENST00000506274.1_1_4:88140723-88140870:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	593.3028564453125	2	593.307884	1184.60121	3.1576	0.0018734	-2.8577	-0.0016955	0.29989	0.00017793	593.3055039864923	97.766	1.0641	97.766	97.397	98.461	0					44	24	3	0	0	0	0.5635	1	10760	10760		46.457	2.0796	1	1444900			54001	12904	44629	44666	58875	58875					0.016297610082574465
SLNGGLLIQP	10	Unmodified	_SLNGGLLIQP_					0	0	0			REV__ENST00000569551.6_1_16:47399687-47486648:-|nuORF	REV__ENST00000569551.6_1_16:47399687-47486648:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.8121643066406	2	506.295299	1010.57605	0.19882	0.00010066	0.18798	9.5171E-05	0.38679	0.00019583	506.29526435179474	89.5	1.4538	86.925	86.656	88.11	-2.575					36	28	2	0	0	0	0.026523	1	7764	7764		71.877	0	1	241650	+		54002	18904	44630	44667	58876	58876					0.0711802947733986
SLNGPDSSLL	10	Unmodified	_SLNGPDSSLL_					0	0	0			REV__ENST00000263863.8_1_2:85924752-85925953:+|nuORF	REV__ENST00000263863.8_1_2:85924752-85925953:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	501.759033203125	2	501.758746	1001.50294	-1.2873	-0.00064594	1.1231	0.00056355	-0.16421	-8.2392E-05	501.7592933844178	69.011	1.5923	66.391	65.77	67.362	-2.6203					59	31	2	0	0	0	0.22511	1	5467	5467		90.601	5.44	1	925860	+		54003	24009	44631	44668	58877	58877					0.0022485596406340846
SLNKGKKLI	9	Unmodified	_SLNKGKKLI_					0	0	0		ENST00000504674.1_1_5:39719286-39719799:-|nuORF	ENST00000504674.1_1_5:39719286-39719799:-|nuORF	ENST00000504674.1_1_5:39719286-39719799:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	501.2864990234375	2	500.829309	999.644065	-1.2166	-0.00060933	1.9188	0.00096097	0.70212	0.00035164	500.82959175503305	82.293	0.64742	79.997	79.684	80.332	-2.2963					22	12	3	0	0	0	0.027462	1	4610	4610		19.997	9.1312	1	38818			54004	12878	44632	44669	58878	58878					0.1442289912798742
SLNKMKNNS	9	Unmodified	_SLNKMKNNS_					0	0	0			REV__ENSG00000047617|ENST00000682330|ANO2	REV__ENSG00000047617|ENST00000682330|ANO2	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.8284301757812	2	518.266216	1034.51788	1.7969	0.00093128	2.7732	0.0014373	4.5701	0.0023686	518.267264906677	122.87	0.78676	121.84	121.58	122.37	-1.0286					30	14	3	0	0	0	0.027462	1	9461	9461		25.574	0	1	68450	+		54005	16659	44633	44670	58879	58879					0.002000245603994699
SLNNILKLL	9	Unmodified	_SLNNILKLL_					0	0	0			REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|106|2|sense	REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|106|2|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.8185424804688	2	514.329142	1026.64373	-1.3699	-0.00070456	1.1692	0.00060135	-0.20067	-0.00010321	514.3301742873138	118.56	0.68473	117.21	116.94	117.63	-1.3444					17	12	2	0	0	0	0.027462	1	11111	11111		35.618	0	1	16584	+		54006	28543	44634	44671	58880	58880					0.13147479408144136
SLNSLFLY	8	Unmodified	_SLNSLFLY_					0	0	0			REV__ENSG00000186881|ENST00000334726|OR13F1	REV__ENSG00000186881|ENST00000334726|OR13F1	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.9309997558594	2	478.758018	955.501483	1.4344	0.00068673	-3.1882	-0.0015264	-1.7538	-0.00083964	478.756459842456	79.282	0.27546	79.282	79.119	79.394	0					11	6	2	0	0	0	0.028476	1	8059	8059		21.702	0	1	614200	+		54007	22618	44635	44672	58881	58881					0.021952666659331044
SLNSVPLT	8	Unmodified	_SLNSVPLT_					0	0	0			REV__nc|ENSG00000096088|P20142-2|PGC	REV__nc|ENSG00000096088|P20142-2|PGC	MULTI-MSMS	OvCa99_classI_Rep5	1	415.7362060546875	2	415.734543	829.454533	0.77042	0.00032029	0.6068	0.00025227	1.3772	0.00057256	415.73472583422773	66.594	0.84077	66.594	66.372	67.212	0					42	20	3	0	0	0	0.61436	1	6180	6180		60.972	0	1	2050300	+		54008	28763	44636	44673	58882	58882					0.03298407114800739
SLNVHYNL	8	Unmodified	_SLNVHYNL_					0	0	0		L1MEc_dup2383|chr2:89575914-89577159:-|1.0505817924982768|0.1474267064561223|2.83|423.0|54|3|sense	L1MEc_dup2383|chr2:89575914-89577159:-|1.0505817924982768|0.1474267064561223|2.83|423.0|54|3|sense	L1MEc_dup2383|chr2:89575914-89577159:-|1.0505817924982768|0.1474267064561223|2.83|423.0|54|3|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.76898193359375	2	480.250892	958.48723	0.18084	8.6847E-05	3.8692	0.0018582	4.0501	0.0019451	480.2523464662078	57.011	1.1714	53.666	53.324	54.495	-3.3449					36	22	3	0	0	0	0.028476	1	3653	3653		37.159	0	1	142720			54009	14624	44637	44674	58883	58883					0.006326142376565258
SLPAASSSSSS	11	Unmodified	_SLPAASSSSSS_					0	0	0		nc|ENSG00000154767|Q01831-2|XPC;ENSG00000154767|ENST00000285021|XPC	nc|ENSG00000154767|Q01831-2|XPC	nc|ENSG00000154767|Q01831-2|XPC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.3191223144531	2	490.730186	979.445819	-0.77515	-0.00038039	1.4135	0.00069363	0.63832	0.00031324	490.7307313395436	45.485	1.5107	42.446	42.127	43.637	-3.0385					68	28	3	0	0	0	0.025638	1	2443	2443		30.318	12.953	1	294880			54010	5753	44638	44675	58884	58884					-0.044726113123147115
SLPAEEDSVL	10	Unmodified	_SLPAEEDSVL_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.2750244140625	2	530.263862	1058.51317	1.1357	0.00060224	-2.058	-0.0010913	-0.92231	-0.00048907	530.2624393202086	138.96	0.96188	138.96	138.5	139.46	0					42	19	3	0	0	0	0.026665	1	16188	16188		26.693	0	1	220820			54011	1151	44639	44676	58885	58885					-0.013745811013677667
SLPCPVLLPAL	11	Unmodified	_SLPCPVLLPAL_					0	0	0		ENST00000437048.6_2_17:422181-422340:-|nuORF	ENST00000437048.6_2_17:422181-422340:-|nuORF	ENST00000437048.6_2_17:422181-422340:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	561.309326171875	2	561.833203	1121.65185	-0.075727	-4.2546E-05	2.0819	0.0011697	2.0061	0.0011271	561.8342840708132	79.975	1.3683	77.635	76.952	78.32	-2.3399					49	26	2	0	0	0	0.0253	1	4389	4389		51.335	0	1	71616			54012	11882	44640	44677	58886	58886					0.09589290333246936
SLPCRPLL	8	Unmodified	_SLPCRPLL_					0	0	0		ENST00000525294.5_1_6:44102412-44108244:+|nuORF	ENST00000525294.5_1_6:44102412-44108244:+|nuORF	ENST00000525294.5_1_6:44102412-44108244:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	449.7640075683594	2	449.762581	897.510608	5.9884	0.0026934	-1.6684	-0.00075039	4.32	0.001943	449.7616579337906	25.669	0.8354	22.96	22.778	23.613	-2.7097					39	19	3	0	0	0	0.75991	1	280	280		21.702	0	1	137640			54013	13188	44641	44678	58887	58887					0.057753367506279574
SLPDFGISYV	10	Unmodified	_SLPDFGISYV_					0	0	0		nc|ENSG00000149781|Q86UX7|FERMT3;ENSG00000149781|ENST00000345728|FERMT3	nc|ENSG00000149781|Q86UX7|FERMT3	nc|ENSG00000149781|Q86UX7|FERMT3	MULTI-MSMS	OvCa99_classI_Rep5	1	549.2808227539062	2	549.279315	1096.54408	1.0737	0.00058974	0.901	0.0004949	1.9747	0.0010846	549.2797047231672	144.53	0.87637	144.53	144.21	145.08	0					31	17	2	0	0	0	0.26627	1	16910	16910		84.916	28.194	1	361470			54014	15087	44642	44679	58888	58888					-0.0003338299648021348
SLPDIKVYL	9	Unmodified	_SLPDIKVYL_					0	0	0		nc|ENSG00000169220|O43566-5|RGS14;ENSG00000169220|ENST00000408923|RGS14;nc|ENSG00000169220|O43566-4|RGS14;ENST00000514713.5_1_5:176793951-176795930:+|nuORF;nc|ENSG00000169220|O43566-6|RGS14;ENST00000425155.6_1_5:176795054-176799073:+|nuORF	nc|ENSG00000169220|O43566-5|RGS14	nc|ENSG00000169220|O43566-5|RGS14	MULTI-MSMS	OvCa99_classI_Rep5	1	524.3084716796875	2	524.307875	1046.6012	1.506	0.00078962	0.22676	0.00011889	1.7328	0.00090851	524.3078778271837	122.47	0.54789	122.47	122.22	122.77	0					27	11	3	0	0	0	0.27001	1	14119	14119		66.429	2.222	1	983500			54015	6988	44643	44680	58889	58889					0.07976084279880524
SLPDLRNI	8	Unmodified	_SLPDLRNI_					0	0	0		nc|ENSG00000170703|Q8N841-2|TTLL6;ENST00000376681.7_1_17:46840236-46881289:-|nuORF;TTLL6|p.A709Cfs*4|1|0.09|ENSG00000170703|chr17:48770013-48770014|-/A|frameshift_variant;nc|ENSG00000170703|Q8N841-3|TTLL6;ENSG00000170703|ENST00000393382|TTLL6	nc|ENSG00000170703|Q8N841-2|TTLL6	nc|ENSG00000170703|Q8N841-2|TTLL6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.7557373046875	2	464.266542	926.51853	-0.31923	-0.00014821	1.3339	0.0006193	1.0147	0.00047109	464.2674246184239	66.758	1.0357	63.268	62.902	63.938	-3.4902					46	20	4	0	0	0	0.028476	1	4946	4946		38.806	0	1	92657			54016	7129	44644	44681	58890	58890					0.052331872717559236
SLPEDFYHF	9	Unmodified	_SLPEDFYHF_					0	0	0		ENST00000506125.1_1_4:170671685-170679028:-|nuORF;ENSG00000056050|ENST00000393381|HPF1	ENST00000506125.1_1_4:170671685-170679028:-|nuORF	ENST00000506125.1_1_4:170671685-170679028:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	577.7628173828125	2	577.761289	1153.50803	1.6524	0.0009547	0.4832	0.00027918	2.1356	0.0012339	577.7614506484232	117.55	1.1184	117.55	117.09	118.2	0					57	23	3	0	0	0	0.55588	1	13472	13472		37.159	6.5902	1	475460			54017	1226	44645	44682	58891	58891					-0.06258840173336466
SLPEHHAAAP	10	Unmodified	_SLPEHHAAAP_					0	0	0		ENSG00000176692|ENST00000649859|FOXC2	ENSG00000176692|ENST00000649859|FOXC2	ENSG00000176692|ENST00000649859|FOXC2	MULTI-SECPEP	OvCa9_classI_Rep3	3	514.8103637695312	2	515.259248	1028.50394	0.3449	0.00017771	-1.3222	-0.00068129	-0.97732	-0.00050357	515.2581441043504	114.83	0.839	113.77	113.3	114.14	-1.055					25	16	2	0	0	0	0.026752	1	8519	8519		27.882	3.6795	1	20909			54018	7622	44646	44683	58892	58892					-0.00916884876369295
SLPGERTLL	9	Unmodified	_SLPGERTLL_					0	0	0		ENST00000220509.9_1_15:41192311-41192374:+|nuORF	ENST00000220509.9_1_15:41192311-41192374:+|nuORF	ENST00000220509.9_1_15:41192311-41192374:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	493.28729248046875	2	493.287474	984.560395	0.82619	0.00040755	-1.0665	-0.00052608	-0.2403	-0.00011853	493.2868798563699	111.47	1.4782	111.33	110.88	112.36	-0.13961					66	29	3	0	0	0	0.091859	1	10529	10529		99.375	0.74558	1	352570			54019	9685	44647	44684	58893	58893					0.06749742960300864
SLPGISRWL	9	Unmodified	_SLPGISRWL_					0	0	0		DOCK4|p.F1456Lfs*4|1|0.11|ENSG00000128512|chr7:111755521-111755536|ACGCTTTTCCACTTCA/-|frameshift_variant	DOCK4|p.F1456Lfs*4|1|0.11|ENSG00000128512|chr7:111755521-111755536|ACGCTTTTCCACTTCA/-|frameshift_variant	DOCK4|p.F1456Lfs*4|1|0.11|ENSG00000128512|chr7:111755521-111755536|ACGCTTTTCCACTTCA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.79638671875	2	514.798009	1027.58147	-1.2563	-0.00064674	1.5853	0.00081613	0.32904	0.00016939	514.7986584541151	118.35	1.0002	117.01	116.58	117.58	-1.3444					45	18	4	0	0	0	0.50149	1	11099	11099		42.396	3.59	1	167630			54020	758	44648	44685	58894	58894					0.06877753059779934
SLPGWLAL	8	Unmodified	_SLPGWLAL_					0	0	0		ENST00000325212.10_2_11:93394871-93399862:+|nuORF	ENST00000325212.10_2_11:93394871-93399862:+|nuORF	ENST00000325212.10_2_11:93394871-93399862:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	428.2387390136719	2	428.749996	855.485439	0.55393	0.0002375	-4.3582	-0.0018686	-3.8043	-0.0016311	428.74779455758807	47.353	1.0129	44.28	43.86	44.873	-3.0724					29	19	2	0	0	0	0.028476	1	2607	2607		29.842	0	1	33443			54021	10401	44649	44686	58895	58895					0.05191605219692974
SLPHLQENVD	10	Unmodified	_SLPHLQENVD_					0	0	0			REV__HTR3E|p.L84P|1|0.27|ENSG00000186038|chr3:184101501-184101501|T/C|missense_variant	REV__HTR3E|p.L84P|1|0.27|ENSG00000186038|chr3:184101501-184101501|T/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.312255859375	2	576.288202	1150.56185	-1.0659	-0.00061427	3.884	0.0022383	2.8181	0.0016241	576.2903700172565	99.483	1.3145	97.798	97.217	98.532	-1.685					68	25	4	0	0	0	0.026522	1	6640	6640		65.465	14.273	1	356360	+		54022	28288	44650	44687	58896	58896					-0.0074066774163839
SLPKGVVEV	9	Unmodified	_SLPKGVVEV_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	OvCa99_classI_Rep5	1	464.28125	2	464.279118	926.543683	1.6325	0.00075792	0.62918	0.00029211	2.2616	0.00105	464.27923065431673	79.386	1.1135	79.386	79.079	80.192	0					61	27	3	0	0	0	0.3249	1	8089	8089		60.118	1.3363	1	2609700			54023	5448	44651	44688	58897	58897					0.07747242074322003
SLPKGVVEV	9	Unmodified	_SLPKGVVEV_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	OvCa9_classI_Rep3	3	464.2803039550781	2	464.279118	926.543683	-0.49835	-0.00023137	-0.1943	-9.0207E-05	-0.69265	-0.00032158	464.2792310148003	81.133	1.5709	78.811	78.492	80.062	-2.3226					64	30	4	0	0	0	0.28934	1	4496	4496		64.207	3.2353	1	604580			54024	5448	44651	44688	58898	58898					0.07747242074322003
SLPKKLALL	9	Unmodified	_SLPKKLALL_					0	0	0		ENSG00000104979|ENST00000588234|C19orf53;ENST00000588858.5_1_19:13886394-13889009:+|nuORF	ENSG00000104979|ENST00000588234|C19orf53	ENSG00000104979|ENST00000588234|C19orf53	MULTI-MSMS	OvCa99_classI_Rep5	1	491.8379211425781	2	491.836603	981.658653	2.0959	0.0010308	0.19423	9.5531E-05	2.2901	0.0011264	491.8365449518006	84.071	1.1216	84.071	83.841	84.963	0					63	26	4	0	0	0	0.34132	1	8789	8789		58.23	3.4536	1	5846900			54025	2415	44652	44689	58899	58899					0.1670897127612534
SLPLCPLKPI	10	Unmodified	_SLPLCPLKPI_					0	0	0			REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|90|2|sense	REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|90|2|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	540.830810546875	2	540.827921	1079.64129	2.013	0.0010887	4.3054	0.0023285	6.3184	0.0034172	540.8302826822948	124.41	3.5435	123.37	123.03	126.57	-1.0377					194	67	5	0	0	0	0.67931	1	9763	9763		32.812	4.9302	1	8697600	+		54026	28264	44653	44690	58900	58900					0.10465307678805402
SLPLFVGFII	10	Unmodified	_SLPLFVGFII_					0	0	0			REV__ENSG00000136546|ENST00000643258|SCN7A	REV__ENSG00000136546|ENST00000643258|SCN7A	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.3302612304688	2	553.336436	1104.65832	-3.6376	-0.0020128	-3.9217	-0.00217	-7.5593	-0.0041828	553.3340858441829	153.01	1.0617	151.57	151.24	152.3	-1.435					63	25	4	0	0	0	0.71192	1	15128	15128		29.15	3.6994	1	106460	+		54027	19393	44654	44691	58901	58901					0.11017551556301441
SLPQLPNTV	9	Unmodified	_SLPQLPNTV_					0	0	0		ENST00000263563.6_1_10:72326756-72327032:+|nuORF	ENST00000263563.6_1_10:72326756-72327032:+|nuORF	ENST00000263563.6_1_10:72326756-72327032:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	484.77386474609375	2	484.7742	967.533846	-1.5084	-0.00073122	-0.15829	-7.6735E-05	-1.6667	-0.00080796	484.77403906510136	92.046	3.4526	90.022	89.433	92.885	-2.0241					159	69	4	0	0	0	0.13482	1	5836	5836		87.754	2.3948	1	6192900			54028	9913	44655	44692	58902	58902					0.04878054068956317
SLPRAGPLGG	10	Unmodified	_SLPRAGPLGG_					0	0	0		ENSG00000133597|ENST00000072869|ADCK2;ADCK2|p.Y145*|1|0.35|ENSG00000133597|chr7:140673765-140673765|C/-|frameshift_variant	ENSG00000133597|ENST00000072869|ADCK2	ENSG00000133597|ENST00000072869|ADCK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	463.7422790527344	2	462.766709	923.518865	2.3545	0.0010896	-0.0091245	-4.2225E-06	2.3454	0.0010854	462.7664997787061	95.916	0.29607	95.916	95.743	96.039	0					9	6	2	0	0	0	0.026802	1	10502	10502		34.173	0	1	98081			54029	4225	44656	44693	58903	58903					0.054046069916125816
SLPRGAVVSL	10	Unmodified	_SLPRGAVVSL_					0	0	0			REV__ENST00000536344.5_1_11:6479060-6495064:-|nuORF	REV__ENST00000536344.5_1_11:6479060-6495064:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	499.8039855957031	2	499.803291	997.59203	-0.79283	-0.00039626	0.56419	0.00028199	-0.22863	-0.00011427	499.803503863494	58.325	1.5782	55.54	55.08	56.658	-2.7844					54	30	2	0	0	0	0.50999	1	4193	4193		52.937	0.63753	1	917370	+		54030	17975	44657	44694	58904	58904					0.09313735714226823
SLPRSPRR	8	Unmodified	_SLPRSPRR_					0	0	0		ENST00000403682.7_1_22:20748811-20761255:+|nuORF	ENST00000403682.7_1_22:20748811-20761255:+|nuORF	ENST00000403682.7_1_22:20748811-20761255:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.78887939453125	2	484.79105	967.567546	-0.31846	-0.00015439	2.9832	0.0014462	2.6647	0.0012918	484.792310501511	76.585	1.2411	73.646	73.365	74.607	-2.9389					27	25	2	0	0	0	0.028476	1	6076	6076		37.159	3.6435	1	37959			54031	11442	44658	44695	58905	58905					0.08246520351372055
SLPRSPRR	8	Unmodified	_SLPRSPRR_					0	0	0		ENST00000403682.7_1_22:20748811-20761255:+|nuORF	ENST00000403682.7_1_22:20748811-20761255:+|nuORF	ENST00000403682.7_1_22:20748811-20761255:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	484.79105	967.567546	-0.95964	-0.00046522	3.8016	0.001843	2.842	0.0013778	484.79279771541	75.801	0.76277	73.429	72.958	73.721	-2.3715	-0.10834	0.00023627	NaN	37.159	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40025			54032	11442	44658	44695							0.08246520351372055
SLPRWMGTT	9	Unmodified	_SLPRWMGTT_					0	0	0			REV__ARHGEF17|p.Y1216Sfs*5|1|0.09|ENSG00000110237|chr11:73355937-73355937|A/-|frameshift_variant	REV__ARHGEF17|p.Y1216Sfs*5|1|0.09|ENSG00000110237|chr11:73355937-73355937|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	524.7662353515625	2	524.765852	1047.51715	0.20193	0.00010597	0.020811	1.0921E-05	0.22274	0.00011689	524.7656821211727	129.4	1.9283	128.29	127.55	129.48	-1.1121					82	38	4	0	0	0	0.61208	1	10256	10256		30.504	2.6214	1	121170	+		54033	15654	44659	44696	58906	58906					-0.004707700886456223
SLPSSELLSKP	11	Unmodified	_SLPSSELLSKP_					0	0	0		nc|ENSG00000181690|Q6DJT9-2|PLAG1;ENSG00000181690|ENST00000316981|PLAG1	nc|ENSG00000181690|Q6DJT9-2|PLAG1	nc|ENSG00000181690|Q6DJT9-2|PLAG1	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.3228149414062	2	579.324254	1156.63395	-1.8864	-0.0010928	-0.92101	-0.00053357	-2.8074	-0.0016264	579.3237390390577	50.507	2.0874	47.366	46.922	49.01	-3.1416					110	40	5	0	0	0	0.68021	1	2951	2951		36.447	0	1	2222100			54034	7946	44660	44697	58907	58907					0.061902466120727695
SLPTGDRSD	9	Unmodified	_SLPTGDRSD_					0	0	0			REV__ENST00000448573.2_1_9:39118101-39140549:-|nuORF	REV__ENST00000448573.2_1_9:39118101-39140549:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	473.2850646972656	2	474.225071	946.435589	-0.31685	-0.00015026	-0.21707	-0.00010294	-0.53392	-0.0002532	474.2248780320222	86.535	1.3168	84.358	84.131	85.447	-2.1768					69	25	4	0	0	0	0.027279	1	5256	5256		60.972	24.525	1	521510	+		54035	17823	44661	44698	58908	58908					-0.039771742468929006
SLQALWEQT	9	Unmodified	_SLQALWEQT_					0	0	0		ENST00000463381.5_1_7:150841066-150841159:+|nuORF	ENST00000463381.5_1_7:150841066-150841159:+|nuORF	ENST00000463381.5_1_7:150841066-150841159:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.8065795898438	2	538.274564	1074.53457	-1.5539	-0.00083644	1.6965	0.00091317	0.14254	7.6727E-05	538.2754012906764	71.126	0.33918	67.669	67.486	67.825	-3.4563					8	6	2	0	0	0	0.027453	1	5402	5402		37.812	0	1	14591			54036	12223	44662	44699	58909	58909					0.0002884871798869426
SLQDEIQRV	9	Unmodified	_SLQDEIQRV_					0	0	0		WDR3|p.R930Gfs*9|1|0.09|ENSG00000065183|chr1:117959402-117959402|G/-|frameshift_variant;ENSG00000065183|ENST00000349139|WDR3	WDR3|p.R930Gfs*9|1|0.09|ENSG00000065183|chr1:117959402-117959402|G/-|frameshift_variant	WDR3|p.R930Gfs*9|1|0.09|ENSG00000065183|chr1:117959402-117959402|G/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	544.2923583984375	2	544.290745	1086.56694	2.4134	0.0013136	-0.21378	-0.00011636	2.1996	0.0011972	544.2905195882753	84.5	0.87182	84.5	84.051	84.923	0					49	20	3	0	0	0	0.093198	1	8826	8826		99.013	13.852	1	3414200			54037	1317	44663	44700	58910	58910					0.027116361209891693
SLQDEIQRV	9	Unmodified	_SLQDEIQRV_					0	0	0		WDR3|p.R930Gfs*9|1|0.09|ENSG00000065183|chr1:117959402-117959402|G/-|frameshift_variant;ENSG00000065183|ENST00000349139|WDR3	WDR3|p.R930Gfs*9|1|0.09|ENSG00000065183|chr1:117959402-117959402|G/-|frameshift_variant	WDR3|p.R930Gfs*9|1|0.09|ENSG00000065183|chr1:117959402-117959402|G/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	544.290745	1086.56694	-0.78959	-0.00042977	1.6243	0.00088407	0.83466	0.0004543	544.2913430460586	86.236	1.3377	84.746	84.196	85.534	-1.4906	0.11707	0.0013684	NaN	99.013	36	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54094			54038	1317	44663	44700							0.027116361209891693
SLQDEIQRV	9	Unmodified	_SLQDEIQRV_					0	0	0		WDR3|p.R930Gfs*9|1|0.09|ENSG00000065183|chr1:117959402-117959402|G/-|frameshift_variant;ENSG00000065183|ENST00000349139|WDR3	WDR3|p.R930Gfs*9|1|0.09|ENSG00000065183|chr1:117959402-117959402|G/-|frameshift_variant	WDR3|p.R930Gfs*9|1|0.09|ENSG00000065183|chr1:117959402-117959402|G/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	544.290745	1086.56694	-1.0694	-0.00058206	1.4739	0.00080222	0.40449	0.00022016	544.2911377879615	86.835	1.2203	84.658	84.33	85.551	-2.1768	0.029237	0.0012047	NaN	99.013	52	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279910			54039	1317	44663	44700							0.027116361209891693
SLQDEIQRV	9	Unmodified	_SLQDEIQRV_					0	0	0		WDR3|p.R930Gfs*9|1|0.09|ENSG00000065183|chr1:117959402-117959402|G/-|frameshift_variant;ENSG00000065183|ENST00000349139|WDR3	WDR3|p.R930Gfs*9|1|0.09|ENSG00000065183|chr1:117959402-117959402|G/-|frameshift_variant	WDR3|p.R930Gfs*9|1|0.09|ENSG00000065183|chr1:117959402-117959402|G/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	544.290745	1086.56694	-1.2253	-0.00066691	0.8199	0.00044627	-0.40537	-0.00022064	544.2910730616542	87.238	1.2059	84.611	84.399	85.605	-2.6269	-0.01759	0.00049278	NaN	99.013	52	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218940			54040	1317	44663	44700							0.027116361209891693
SLQDLIEKV	9	Unmodified	_SLQDLIEKV_					0	0	0		nc|ENSG00000138674|O94979-8|SEC31A;nc|ENSG00000138674|O94979-3|SEC31A;ENSG00000138674|ENST00000395310|SEC31A;nc|ENSG00000138674|O94979-2|SEC31A;nc|ENSG00000138674|O94979-9|SEC31A;nc|ENSG00000138674|O94979-4|SEC31A;nc|ENSG00000138674|O94979-10|SEC31A;nc|ENSG00000138674|O94979-6|SEC31A;nc|ENSG00000138674|O94979-7|SEC31A	nc|ENSG00000138674|O94979-8|SEC31A	nc|ENSG00000138674|O94979-8|SEC31A	MULTI-MSMS	OvCa99_classI_Rep5	1	522.8010864257812	2	522.800414	1043.58628	1.0858	0.00056767	1.0192	0.00053282	2.105	0.0011005	522.8008588743636	118.98	0.56837	118.98	118.63	119.19	0					17	11	2	0	0	0	0.066102	1	13642	13642		109.48	16.335	1	96091			54041	4710	44664	44701	58911	58911					0.06622592411895312
SLQEEIAFL	9	Unmodified	_SLQEEIAFL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa99_classI_Rep5	1	525.2806396484375	2	525.279315	1048.54408	0.96992	0.00050948	1.1564	0.00060742	2.1263	0.0011169	525.2798026612573	143.64	1.0394	143.64	143.32	144.35	0					54	20	4	0	0	0	0.094616	1	16789	16789		98.629	27.251	1	954910			54042	1049	44665	44702	58912	58912					0.02174617003538515
SLQELKKLLEK	11	Unmodified	_SLQELKKLLEK_					0	0	0			REV__ENSG00000198483|ENST00000355594|ANKRD35	REV__ENSG00000198483|ENST00000355594|ANKRD35	MULTI-SECPEP	OvCa9_classI_Rep2	2	444.2587585449219	3	443.609777	1327.8075	0.94754	0.00042034	-0.066558	-2.9526E-05	0.88098	0.00039081	443.60967004432257	56.917	0.9413	54.125	53.782	54.724	-2.792					28	18	2	0	0	0	0.026277	1	4043	4043		17.833	0	1	36376	+		54043	23021	44666	44703	58913	58913					0.15671032388354433
SLQGNTVRDD	10	Unmodified	_SLQGNTVRDD_					0	0	0		nc|ENSG00000167984|Q7RTR2-4|NLRC3;ENSG00000167984|ENST00000359128|NLRC3;nc|ENSG00000167984|Q7RTR2-2|NLRC3	nc|ENSG00000167984|Q7RTR2-4|NLRC3	nc|ENSG00000167984|Q7RTR2-4|NLRC3	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.8195190429688	2	552.767634	1103.52072	0.87229	0.00048217	3.8049	0.0021032	4.6772	0.0025854	553.2712526103875	90.937	0.36008	90.937	90.738	91.098	0					12	8	2	0	0	0	0.026734	1	9794	9794		24.519	13.932	1	238390			54044	6858	44667	44704	58914	58914					-0.026904287811021277
SLQGNTVRDD	10	Unmodified	_SLQGNTVRDD_					0	0	0		nc|ENSG00000167984|Q7RTR2-4|NLRC3;ENSG00000167984|ENST00000359128|NLRC3;nc|ENSG00000167984|Q7RTR2-2|NLRC3	nc|ENSG00000167984|Q7RTR2-4|NLRC3	nc|ENSG00000167984|Q7RTR2-4|NLRC3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	552.767634	1103.52072	-1.789	-0.00098889	-1.5557	-0.00085997	-3.3447	-0.0018489	553.2692069573466	92.662	0.27649	90.7	90.56	90.836	-1.9617	-0.11846	-0.0031183	NaN	24.519	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16482			54045	6858	44667	44704							-0.026904287811021277
SLQGPRPK	8	Unmodified	_SLQGPRPK_					0	0	0		ENST00000231229.8_2_5:180374644-180376241:+|nuORF	ENST00000231229.8_2_5:180374644-180376241:+|nuORF	ENST00000231229.8_2_5:180374644-180376241:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	441.2066345214844	2	441.761426	881.5083	1.5918	0.00070318	-1.3811	-0.0006101	0.21071	9.3083E-05	441.7607142997757	45.448	0.55438	45.448	45.245	45.8	0					25	12	3	0	0	0	0.028476	1	3175	3175		15.642	7.4105	1	284190			54046	9723	44668	44705	58915	58915					0.06280624337171048
SLQKAPDSIA	10	Unmodified	_SLQKAPDSIA_					0	0	0			REV__tr|A0A553SM98|A0A553SM98_NIACIPTSsugartransportersubunitIIAOS=NialliacirculansOX=1397GN=CEQ21_22095PE=4SV=1	REV__tr|A0A553SM98|A0A553SM98_NIACIPTSsugartransportersubunitIIAOS=NialliacirculansOX=1397GN=CEQ21_22095PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.2792358398438	2	515.282389	1028.55022	-0.4434	-0.00022848	4.0092	0.0020659	3.5658	0.0018374	515.2843619076245	104.99	1.6704	102.87	102.53	104.2	-2.1192					54	32	2	0	0	0	0.6349	1	9514	9514		37.812	0	1	585400	+		54047	30311	44669	44706	58916	58916					0.03709135235044414
SLQKQEAI	8	Unmodified	_SLQKQEAI_					0	0	0		nc|ENSG00000086015|Q6P0Q8-2|MAST2;MAST2|p.P1758Qfs*3|1|0.13|ENSG00000086015|chr1:46035942-46035967|CATGCCGAGGCTGCCCCCTCACCCAG/-|frameshift_variant;ENSG00000086015|ENST00000361297|MAST2	nc|ENSG00000086015|Q6P0Q8-2|MAST2	nc|ENSG00000086015|Q6P0Q8-2|MAST2	MULTI-SECPEP	OvCa99_classI_Rep5	1	459.23822021484375	2	458.758549	915.502546	-0.85416	-0.00039185	0.24817	0.00011385	-0.60599	-0.000278	458.75856428362795	27.966	0.34885	27.966	27.841	28.19	0					10	6	2	0	0	0	0.028476	1	865	865		32.812	7.3622	1	56059			54048	1746	44670	44707	58917	58917					0.04141481034844219
SLQKSTAVM	9	Unmodified	_SLQKSTAVM_					0	0	0		IGSF10|p.S1444Rfs*19|1|0.14|ENSG00000152580|chr3:151445637-151445649|CTGGTGTGATTTG/-|frameshift_variant;IGSF10|p.P1567Lfs*25|1|0.03|ENSG00000152580|chr3:151445281-151445282|-/CACTCCACCCTAGGTGACA|frameshift_variant;IGSF10|p.S1568Dfs*26|1|0.04|ENSG00000152580|chr3:151445279-151445280|-/TC|frameshift_variant;IGSF10|p.V2314Efs*19|1|0.09|ENSG00000152580|chr3:151437598-151437620|CTCTCCACCTTCATTTCGGGCCA/-|frameshift_variant;ENSG00000152580|ENST00000282466|IGSF10	IGSF10|p.S1444Rfs*19|1|0.14|ENSG00000152580|chr3:151445637-151445649|CTGGTGTGATTTG/-|frameshift_variant	IGSF10|p.S1444Rfs*19|1|0.14|ENSG00000152580|chr3:151445637-151445649|CTGGTGTGATTTG/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	482.2791748046875	2	482.760235	963.505917	-0.099659	-4.8111E-05	3.8545	0.0018608	3.7549	0.0018127	482.76255278457177	109.57	0.26366	107.85	107.68	107.94	-1.7256					7	4	2	0	0	0	0.027462	1	10049	10049		51.335	16.135	1	4651.7			54049	5631	44671	44708	58918	58918					0.022704078172182562
SLQLHLVF	8	Unmodified	_SLQLHLVF_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1;KNTC1|p.A934Lfs*16|1|0.04|ENSG00000184445|chr12:122577749-122577750|-/CTTAAAATGT|frameshift_variant;KNTC1-FBXL12|1|fusion	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.7823181152344	2	478.781828	955.549102	-0.58205	-0.00027868	0.072498	3.4711E-05	-0.50955	-0.00024396	478.7817288963389	120.77	1.5373	119.42	118.72	120.25	-1.3479					41	29	2	0	0	0	0.73938	1	11376	11376		31.955	0	1	63911			54050	8158	44672	44709	58919	58919					0.06954965656814238
SLQLHLVF	8	Unmodified	_SLQLHLVF_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1;KNTC1|p.A934Lfs*16|1|0.04|ENSG00000184445|chr12:122577749-122577750|-/CTTAAAATGT|frameshift_variant;KNTC1-FBXL12|1|fusion	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	478.781828	955.549102	-1.7561	-0.00084077	1.7431	0.00083455	-0.012974	-6.2119E-06	478.78244155750394	119.51	0.88594	119.34	119.05	119.94	-0.17137	-0.058061	0.001588	NaN	31.955	32	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36288			54051	8158	44672	44709							0.06954965656814238
SLQLHLVF	8	Unmodified	_SLQLHLVF_					0	0	0		ENSG00000184445|ENST00000333479|KNTC1;KNTC1|p.A934Lfs*16|1|0.04|ENSG00000184445|chr12:122577749-122577750|-/CTTAAAATGT|frameshift_variant;KNTC1-FBXL12|1|fusion	ENSG00000184445|ENST00000333479|KNTC1	ENSG00000184445|ENST00000333479|KNTC1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	478.781828	955.549102	1.6615	0.00079548	-1.8297	-0.00087602	-0.16822	-8.0539E-05	478.78059448533384	120.46	0.8457	119.43	119.17	120.01	-1.0271	0.03608	-0.0018332	NaN	31.955	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48797			54052	8158	44672	44709							0.06954965656814238
SLQLIRPSPD	10	Unmodified	_SLQLIRPSPD_					0	0	0			REV__ENSG00000249693|ENST00000512175|THEGL	REV__ENSG00000249693|ENST00000512175|THEGL	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.8071899414062	2	563.316763	1124.61897	2.1907	0.0012341	2.8387	0.0015991	5.0294	0.0028331	563.3181202022128	134.97	0.27109	134.97	134.86	135.13	0					7	5	2	0	0	0	0.026994	1	15728	15728		19.104	0	1	39605	+		54053	23489	44673	44710	58920	58920					0.06164799534758458
SLQLKILKLLN	11	Unmodified	_SLQLKILKLLN_					0	0	0		tr|A0A7D6W2H2|A0A7D6W2H2_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06065PE=3SV=1	tr|A0A7D6W2H2|A0A7D6W2H2_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06065PE=3SV=1	tr|A0A7D6W2H2|A0A7D6W2H2_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06065PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	428.27569580078125	3	428.286746	1281.83841	1.7911	0.00076709	3.8572	0.001652	5.6483	0.0024191	428.2870158640773	102.12	0.12948	102.12	102.04	102.17	0					4	2	2	0	0	0	0.02595	1	11369	11369		21.032	0	1	34219			54054	35431	44674	44711	58921	58921					0.2087623049328613
SLQLQHLL	8	Unmodified	_SLQLQHLL_					0	0	0			REV__ADAT1|p.A107S|1|0.18|ENSG00000065457|chr16:75617247-75617247|C/A|missense_variant	REV__ADAT1|p.A107S|1|0.18|ENSG00000065457|chr16:75617247-75617247|C/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	476.2841796875	2	476.284734	950.554916	-0.6069	-0.00028906	0.59542	0.00028359	-0.011472	-5.464E-06	476.2848782734841	58.479	2.2012	55.699	55.184	57.386	-2.7801					103	42	4	0	0	0	0.34187	1	4207	4207		99.375	0	1	618100	+		54055	15568	44675	44712	58922	58922					0.07766064168458797
SLQLWLIV	8	Unmodified	_SLQLWLIV_					0	0	0			REV__nc|ENSG00000211785|A0A0B4J245|TRAV12-1	REV__nc|ENSG00000211785|A0A0B4J245|TRAV12-1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.2820129394531	2	486.299853	970.585153	-0.33275	-0.00016182	-4.3133	-0.0020976	-4.6461	-0.0022594	486.2976550662895	94.078	0.8688	91.583	91.315	92.184	-2.4947					33	17	3	0	0	0	0.028476	1	8301	8301		37.028	0	1	59444	+		54056	29115	44676	44713	58923	58923					0.09868422833665136
SLQNHLVL	8	Unmodified	_SLQNHLVL_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4|ABCA13	REV__nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-SECPEP	OvCa9_classI_Rep2	2	462.287109375	2	462.269084	922.523616	-1.7285	-0.00079903	3.1066	0.0014361	1.3781	0.00063704	462.2704051226128	85.377	0.59186	83.886	83.505	84.097	-1.4906					18	11	2	0	0	0	0.028476	1	7378	7378		97.473	5.2821	1	35439	+		54057	22143	44677	44714	58924	58924					0.059254911343600725
SLQPRPLLL	9	Unmodified	_SLQPRPLLL_					0	0	0		ENST00000566611.5_1_16:57786453-57787143:+|nuORF	ENST00000566611.5_1_16:57786453-57787143:+|nuORF	ENST00000566611.5_1_16:57786453-57787143:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	518.828857421875	2	518.829309	1035.64407	-0.53777	-0.00027901	0.10892	5.6512E-05	-0.42884	-0.0002225	518.8292895658562	121.25	2.223	121.05	120.51	122.73	-0.19719					126	44	4	0	0	0	0.31747	2	11746	11733;11746		60.972	2.19	1	627930			54058	13848	44678	44715	58925;58926	58926					0.12766899127996112
SLQPRPLLL	9	Unmodified	_SLQPRPLLL_					0	0	0		ENST00000566611.5_1_16:57786453-57787143:+|nuORF	ENST00000566611.5_1_16:57786453-57787143:+|nuORF	ENST00000566611.5_1_16:57786453-57787143:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.8284301757812	2	518.829309	1035.64407	0.0085595	4.4409E-06	-0.59769	-0.0003101	-0.58913	-0.00030566	518.8289766262699	122.91	2.4522	121.55	121.01	123.46	-1.3666					110	48	3	0	0	0	0.29717	1	11586	11586		63.306	11.971	1	898440			54059	13848	44678	44715	58927	58927					0.12766899127996112
SLQQRVAEL	9	Unmodified	_SLQQRVAEL_					0	0	0		nc|ENSG00000029725|Q15276-2|RABEP1;ENSG00000029725|ENST00000537505|RABEP1	nc|ENSG00000029725|Q15276-2|RABEP1	nc|ENSG00000029725|Q15276-2|RABEP1	MULTI-MSMS	OvCa99_classI_Rep5	1	522.2970581054688	2	522.29583	1042.57711	-0.23016	-0.00012021	1.1296	0.00059	0.89947	0.00046979	522.2960941483308	62.992	0.79304	62.992	62.741	63.534	0					48	19	3	0	0	0	0.024645	1	5640	5640		141.52	12.918	1	5160000			54060	1063	44679	44716	58928	58928					0.057522438462456194
SLQRSQKLE	9	Unmodified	_SLQRSQKLE_					0	0	0			REV__ENSG00000080608|ENST00000397885|PUM3	REV__ENSG00000080608|ENST00000397885|PUM3	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.80908203125	2	544.806562	1087.59857	-0.64926	-0.00035372	2.4423	0.0013306	1.793	0.00097686	544.8076339848565	79.133	2.3917	76.382	75.426	77.817	-2.7514					108	49	3	0	0	0	0.075543	1	6403	6403		104.06	0	1	2689700	+		54061	17057	44680	44717	58929	58929					0.05827628874953916
SLQSLTHVL	9	Unmodified	_SLQSLTHVL_					0	0	0			REV__ENSG00000176281|ENST00000315915|OR4K5	REV__ENSG00000176281|ENST00000315915|OR4K5	MULTI-SECPEP	OvCa9_classI_Rep2	2	499.803955078125	2	499.287474	996.560395	-0.8107	-0.00040477	0.4615	0.00023042	-0.3492	-0.00017435	499.2875631520728	57.842	1.4998	55.05	54.625	56.125	-2.792					63	29	3	0	0	0	0.027455	1	4186	4186		51.335	23.453	1	149360	+		54062	21944	44681	44718	58930	58930					0.061977429602734446
SLQSTILGV	9	Unmodified	_SLQSTILGV_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	459.2684631347656	2	459.26875	916.522947	0.031118	1.4291E-05	-0.14073	-6.4633E-05	-0.10961	-5.0341E-05	459.26858042362244	123.09	1.0403	121.73	121.46	122.5	-1.3666					37	20	3	0	0	0	0.064985	1	11638	11638		110.12	11.49	1	76949			54063	2268	44682	44719	58931	58931					0.06134651694674176
SLQSTILGV	9	Unmodified	_SLQSTILGV_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	459.26875	916.522947	-0.051082	-2.3461E-05	-0.11063	-5.0811E-05	-0.16172	-7.4271E-05	459.2685781335872	122.07	1.0389	121.86	121.47	122.51	-0.21803	0.10878	0.00031523	NaN	110.12	38	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58180			54064	2268	44682	44719							0.06134651694674176
SLQSTILGV	9	Unmodified	_SLQSTILGV_					0	0	0		nc|ENSG00000102910|Q86WA8-2|LONP2;ENSG00000102910|ENST00000285737|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	nc|ENSG00000102910|Q86WA8-2|LONP2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	459.26875	916.522947	1.3387	0.00061484	-1.5146	-0.00069561	-0.17587	-8.0771E-05	459.2679302911101	122.69	0.89258	121.66	121.37	122.27	-1.0286	-0.086621	-0.00097437	NaN	110.12	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63788			54065	2268	44682	44719							0.06134651694674176
SLQVVHKLL	9	Unmodified	_SLQVVHKLL_					0	0	0		ENST00000461023.5_1_16:337901-338117:-|nuORF	ENST00000461023.5_1_16:337901-338117:-|nuORF	ENST00000461023.5_1_16:337901-338117:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	518.8283081054688	2	518.829309	1035.64407	1.7024	0.00088324	-2.0698	-0.0010739	-0.36745	-0.00019064	518.8281964515016	122.5	2.5536	121.47	120.64	123.19	-1.0286					133	48	4	0	0	0	0.38529	2	9455	9455;9469		53.351	2.016	1	994930			54066	12166	44683	44720	58932;58933	58932					0.12766899127996112
SLQVVHKLL	9	Unmodified	_SLQVVHKLL_					0	0	0		ENST00000461023.5_1_16:337901-338117:-|nuORF	ENST00000461023.5_1_16:337901-338117:-|nuORF	ENST00000461023.5_1_16:337901-338117:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.8284912109375	2	518.829309	1035.64407	0.0085595	4.4409E-06	-0.59769	-0.0003101	-0.58913	-0.00030566	518.8289766262699	122.91	2.4522	121.55	121.01	123.46	-1.3666					110	48	3	0	0	0	0.56889	1	11672	11672		35.618	1.4457	1	898440			54067	12166	44683	44720	58934	58934					0.12766899127996112
SLREKWTE	8	Unmodified	_SLREKWTE_					0	0	0		ENSG00000136982|ENST00000313655|DSCC1	ENSG00000136982|ENST00000313655|DSCC1	ENSG00000136982|ENST00000313655|DSCC1	MULTI-MSMS	OvCa9_classI_Rep2	2	524.7763061523438	2	524.774731	1047.53491	1.4791	0.00077619	-1.4818	-0.00077762	-0.0027326	-1.434E-06	524.7737345480416	29.141	0.47323	26.432	26.259	26.732	-2.7097					18	9	2	0	0	0	0.74229	1	682	682		30.504	1.3336	1	25571			54068	4545	44684	44721	58935	58935					0.013042684378660852
SLREVPLCIV	10	Unmodified	_SLREVPLCIV_					0	0	0			REV__ENST00000505692.1_1_4:122780107-122782831:-|nuORF	REV__ENST00000505692.1_1_4:122780107-122782831:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.8399047851562	2	564.825909	1127.63727	-0.1406	-7.9415E-05	3.9744	0.0022448	3.8338	0.0021654	564.8280917366961	52.191	0.13194	52.191	52.127	52.259	0					4	2	2	0	0	0	0.027021	1	4079	4079		21.96	0	1	64014	+		54069	19559	44685	44722	58936	58936					0.07855218185090962
SLRFKPEEL	9	Unmodified	_SLRFKPEEL_					0	0	0		nc|ENSG00000123009|O60361|NME2P1	nc|ENSG00000123009|O60361|NME2P1	nc|ENSG00000123009|O60361|NME2P1	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.8165283203125	2	559.813856	1117.61316	3.9956	0.0022368	-0.65346	-0.00036581	3.3422	0.001871	559.813249709843	134.7	2.6126	133.16	132.47	135.08	-1.5437					137	52	4	0	0	0	0.55011	1	13100	13100		37.812	0	1	191680			54070	14993	44686	44723	58937	58937					0.05905701023084475
SLRFVFPTL	9	Unmodified	_SLRFVFPTL_					0	0	0			REV__nc|ENSG00000006576|Q8N3S3-7|PHTF2	REV__nc|ENSG00000006576|Q8N3S3-7|PHTF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.7991333007812	2	540.316035	1078.61752	2.1562	0.001165	1.1732	0.0006339	3.3294	0.0017989	540.3168985620277	82.799	0.25401	82.799	82.652	82.906	0					7	5	2	0	0	0	0.027462	1	8574	8574		20.947	0	1	112150	+		54071	28702	44687	44724	58938	58938					0.08135210236650892
SLRGAAPRSFH	11	Unmodified	_SLRGAAPRSFH_					0	0	0		nc|ENSG00000133193|Q969W3|VCF1;ENSG00000133193|ENST00000405159|FAM104A	nc|ENSG00000133193|Q969W3|VCF1	nc|ENSG00000133193|Q969W3|VCF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	400.2206115722656	3	400.219506	1197.63669	3.0734	0.0012301	0.61863	0.00024759	3.6921	0.0014776	400.2196562441456	35.814	1.0982	32.965	32.69	33.788	-2.849					63	21	4	0	0	0	0.63942	1	1179	1179		41.08	2.3265	1	221280			54072	4210	44688	44725	58939	58939					0.04577559580275192
SLRGAAPRSFH	11	Unmodified	_SLRGAAPRSFH_					0	0	0		nc|ENSG00000133193|Q969W3|VCF1;ENSG00000133193|ENST00000405159|FAM104A	nc|ENSG00000133193|Q969W3|VCF1	nc|ENSG00000133193|Q969W3|VCF1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	400.219506	1197.63669	-0.74792	-0.00029933	4.4126	0.001766	3.6647	0.0014667	400.2211497296848	35.913	0.74563	33.203	32.95	33.696	-2.7097	0.11905	0.0034672	NaN	41.08	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48089			54073	4210	44688	44725							0.04577559580275192
SLRHQYDD	8	Unmodified	_SLRHQYDD_					0	0	0			REV__ENSG00000174799|ENST00000257287|CEP135	REV__ENSG00000174799|ENST00000257287|CEP135	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.7922973632812	2	517.238513	1032.46247	-0.97446	-0.00050403	3.7797	0.001955	2.8053	0.001451	517.2403185674575	50.549	0.48732	50.549	50.332	50.819	0					18	10	2	0	0	0	0.028476	1	3822	3822		71.296	32.49	1	240690	+		54074	21853	44689	44726	58940	58940					-0.05246065635719788
SLRIPFAEL	9	Unmodified	_SLRIPFAEL_					0	0	0			REV__ENST00000225729.7_1_17:18010580-18010793:+|nuORF	REV__ENST00000225729.7_1_17:18010580-18010793:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3030395507812	2	523.305667	1044.59678	-2.1227	-0.0011108	-1.8084	-0.00094634	-3.9311	-0.0020572	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.5811	1	11363	11363		34.173	3.6689	1	183010	+		54075	23761	44690	44727	58941	58941					0.07626619856978323
SLRIPLYPS	9	Unmodified	_SLRIPLYPS_					0	0	0		ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3029174804688	2	523.305667	1044.59678	-2.1227	-0.0011108	-1.8084	-0.00094634	-3.9311	-0.0020572	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.61208	2	11490	11454;11490		30.504	3.8107	1	183010			54076	1151	44691	44728	58942;58943	58943					0.07626619856978323
SLRISKPLS	9	Unmodified	_SLRISKPLS_					0	0	0			REV__ENST00000550078.2_2_1:203765343-203765391:+|nuORF	REV__ENST00000550078.2_2_1:203765343-203765391:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.8132629394531	2	500.811116	999.60768	-0.23852	-0.00011945	-0.2188	-0.00010958	-0.45732	-0.00022903	500.810889421349	59.423	1.378	56.031	55.755	57.133	-3.392					74	27	4	0	0	0	0.27001	1	3995	3995		66.429	0	1	926570	+		54077	27463	44692	44729	58944	58944					0.10786022231263814
SLRIWLKL	8	Unmodified	_SLRIWLKL_					0	0	0			REV__ENST00000263168.3_1_1:113161809-113162112:+|nuORF	REV__ENST00000263168.3_1_1:113161809-113162112:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.78955078125	2	514.834394	1027.65424	2.0386	0.0010495	-0.11321	-5.8282E-05	1.9254	0.00099126	514.8341480659926	102.23	0.85278	102.23	101.95	102.81	0					46	19	4	0	0	0	0.028476	1	11354	11354		30.504	0	1	1880600	+		54078	23990	44693	44730	58945	58945					0.1415150685320441
SLRIYYKK	8	Unmodified	_SLRIYYKK_					0	0	0		nc|ENSG00000070886|P29322-2|EPHA8;ENSG00000070886|ENST00000166244|EPHA8	nc|ENSG00000070886|P29322-2|EPHA8	nc|ENSG00000070886|P29322-2|EPHA8	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.8123168945312	2	535.821484	1069.62842	0.14213	7.6154E-05	2.0395	0.0010928	2.1816	0.0011689	536.3237505519228	71.783	0.20881	71.783	71.668	71.877	0					7	4	2	0	0	0	0.028476	1	6954	6954		16.473	0	1	298300			54079	1440	44694	44731	58946	58946					0.09638612610933706
SLRKAYEV	8	Unmodified	_SLRKAYEV_					0	0	0			REV__ETNPPL|p.N329Rfs*16|1|0.16|ENSG00000164089|chr4:108748100-108748101|AT/-|frameshift_variant	REV__ETNPPL|p.N329Rfs*16|1|0.16|ENSG00000164089|chr4:108748100-108748101|AT/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	484.26910400390625	2	483.274367	964.53418	-0.96237	-0.00046509	0.5691	0.00027503	-0.39328	-0.00019006	483.27441969880647	48.711	0.84576	45.95	45.578	46.424	-2.7603					27	16	3	0	0	0	0.028476	1	3097	3097		44.531	0	1	79070	+		54080	20940	44695	44732	58947	58947					0.05049473788801606
SLRKESVS	8	Unmodified	_SLRKESVS_					0	0	0		ENST00000171887.8_1_2:218666529-218666799:-|nuORF	ENST00000171887.8_1_2:218666529-218666799:-|nuORF	ENST00000171887.8_1_2:218666529-218666799:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	453.25921630859375	2	453.256174	904.497795	0.065973	2.9903E-05	3.5789	0.0016221	3.6448	0.001652	453.257892988682	79.853	1.4109	77.102	76.797	78.208	-2.7514					83	28	5	0	0	0	0.68714	1	6501	6501		45.952	1.8352	1	370320			54081	9643	44696	44733	58948	58948					0.0417259689210141
SLRLKAKQHAS	11	Unmodified	_SLRLKAKQHAS_					0	0	0		ENSG00000107859|ENST00000370002|PITX3	ENSG00000107859|ENST00000370002|PITX3	ENSG00000107859|ENST00000370002|PITX3	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8683471679688	2	619.870028	1237.7255	-3.1788	-0.0019704	2.28	0.0014133	-0.89873	-0.00055709	619.8711859647292	147.21	3.9856	146.98	144.83	148.82	-0.22696					207	79	4	0	0	0	0.72064	1	14867	14867		22.58	1.6327	1	163200			54082	2620	44697	44734	58949	58949					0.11614974819940471
SLRLKQNKP	9	Unmodified	_SLRLKQNKP_					0	0	0			REV__ENST00000589042.5_3_2:179517806-179527536:-|nuORF	REV__ENST00000589042.5_3_2:179517806-179527536:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.828125	2	542.33529	1082.65603	0.056085	3.0417E-05	-0.51433	-0.00027894	-0.45824	-0.00024852	542.3349129466051	67.157	0.84149	63.667	63.442	64.284	-3.4902					39	16	4	0	0	0	0.027462	1	4961	4961		21.96	0	1	335460	+		54083	27899	44698	44735	58950	58950					0.11800515871163952
SLRLLASDL	9	Unmodified	_SLRLLASDL_					0	0	0		ENSG00000134690|ENST00000373055|CDCA8	ENSG00000134690|ENST00000373055|CDCA8	ENSG00000134690|ENST00000373055|CDCA8	MULTI-MSMS	OvCa9_classI_Rep2	2	494.29473876953125	2	494.295299	986.576045	1.7975	0.0008885	-2.2609	-0.0011176	-0.46343	-0.00022907	494.2941466087284	90.898	1.7806	89.662	88.598	90.379	-1.2355					117	34	4	0	0	0	0.27001	3	8038	8038;8050;8070		66.429	10.925	1	1147000			54084	4318	44699	44736	58951;58952;58953	58951					0.08222029477315118
SLRLLASDL	9	Unmodified	_SLRLLASDL_					0	0	0		ENSG00000134690|ENST00000373055|CDCA8	ENSG00000134690|ENST00000373055|CDCA8	ENSG00000134690|ENST00000373055|CDCA8	MULTI-MSMS	OvCa9_classI_Rep3	3	494.2958984375	2	494.295299	986.576045	-1.1483	-0.00056758	0.076684	3.7905E-05	-1.0716	-0.00052968	494.2953202394874	91.548	1.6915	89.524	88.624	90.315	-2.0241					95	33	4	0	0	0	0.19758	2	5746	5746;5752		76.774	9.2805	1	2048800			54085	4318	44699	44736	58954;58955	58954					0.08222029477315118
SLRMAAEILS	10	Unmodified	_SLRMAAEILS_					0	0	0		nc|ENSG00000116218|Q9NP85-2|NPHS2;ENSG00000116218|ENST00000367615|NPHS2	nc|ENSG00000116218|Q9NP85-2|NPHS2	nc|ENSG00000116218|Q9NP85-2|NPHS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.7980346679688	2	545.799891	1089.58523	-1.0542	-0.00057539	0.14651	7.9964E-05	-0.90771	-0.00049543	545.798354390061	88.91	2.8172	86.307	85.882	88.7	-2.6027					128	55	5	0	0	0	0.53807	1	7636	7636		49.536	0.094497	1	806000			54086	3165	44700	44737	58956	58956					0.0440205477134441
SLRNYDTFL	9	Unmodified	_SLRNYDTFL_					0	0	0			REV__KIDINS220|p.H1622Qfs*20|1|0.07|ENSG00000134313|chr2:8731170-8731171|-/CACTTTGTTGGCAATTTTTAAAGCCC|frameshift_variant	REV__KIDINS220|p.H1622Qfs*20|1|0.07|ENSG00000134313|chr2:8731170-8731171|-/CACTTTGTTGGCAATTTTTAAAGCCC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	564.7899169921875	2	564.787838	1127.56112	2.0131	0.001137	0.71707	0.00040499	2.7302	0.001542	564.7881890961606	52.015	1.7437	48.761	47.755	49.499	-3.2542					100	67	2	0	0	0	0.6959	1	1233	1233		19.36	4.6959	1	21266	+		54087	19193	44701	44738	58957	58957					0.0024453760931919533
SLRQELAAVI	10	Unmodified	_SLRQELAAVI_					0	0	0		PERP-TULP1|1|fusion;nc|ENSG00000112041|O00294-2|TULP1;ENSG00000112041|ENST00000229771|TULP1	PERP-TULP1|1|fusion	PERP-TULP1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	550.3262939453125	2	550.327131	1098.63971	-0.25059	-0.0001379	-0.34715	-0.00019105	-0.59774	-0.00032895	550.3269039710714	83.949	1.6656	82.403	81.784	83.449	-1.5462					94	32	4	0	0	0	0.34811	1	7207	7207		75.043	9.5779	1	662850			54088	2872	44702	44739	58958	58958					0.09433389914420331
SLRQELAAVI	10	Unmodified	_SLRQELAAVI_					0	0	0		PERP-TULP1|1|fusion;nc|ENSG00000112041|O00294-2|TULP1;ENSG00000112041|ENST00000229771|TULP1	PERP-TULP1|1|fusion	PERP-TULP1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	550.3259887695312	2	550.327131	1098.63971	-0.8792	-0.00048385	-0.44419	-0.00024445	-1.3234	-0.0007283	550.3268942315257	85.56	1.6104	84.069	83.505	85.115	-1.4907					109	31	5	0	0	0	0.47142	1	7385	7385		58.23	0	1	1857300			54089	2872	44702	44739	58959	58959					0.09433389914420331
SLRQELAAVI	10	Unmodified	_SLRQELAAVI_					0	0	0		PERP-TULP1|1|fusion;nc|ENSG00000112041|O00294-2|TULP1;ENSG00000112041|ENST00000229771|TULP1	PERP-TULP1|1|fusion	PERP-TULP1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	550.3275146484375	2	550.327131	1098.63971	-1.5395	-0.00084725	0.74414	0.00040952	-0.79539	-0.00043772	550.3275660732565	84.687	1.7638	82.426	81.881	83.645	-2.261					107	35	5	0	0	0	0.47142	1	4932	4932		58.23	1.5089	1	1227100			54090	2872	44702	44739	58960	58960					0.09433389914420331
SLRQELAAVI	10	Unmodified	_SLRQELAAVI_					0	0	0		PERP-TULP1|1|fusion;nc|ENSG00000112041|O00294-2|TULP1;ENSG00000112041|ENST00000229771|TULP1	PERP-TULP1|1|fusion	PERP-TULP1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.3285522460938	2	550.327131	1098.63971	1.1776	0.00064806	-1.611	-0.00088659	-0.43344	-0.00023853	550.3261861557347	85.082	1.568	82.435	82.025	83.593	-2.6463					91	31	4	0	0	0	0.43433	2	7167	7167;7180		63.534	3.6031	1	1352000			54091	2872	44702	44739	58961;58962	58961					0.09433389914420331
SLRQPGLL	8	Unmodified	_SLRQPGLL_					0	0	0			REV__ENSG00000107560|ENST00000355624|RAB11FIP2	REV__ENSG00000107560|ENST00000355624|RAB11FIP2	MULTI-MSMS	OvCa9_classI_Rep3	3	442.2724914550781	2	442.271627	882.528701	-0.345	-0.00015258	0.10734	4.7475E-05	-0.23766	-0.00010511	442.2715133873894	97.162	1.2096	95.402	95.053	96.262	-1.7595					57	23	3	0	0	0	0.52992	1	6428	6428		74.517	0	1	357120	+		54092	17850	44703	44740	58963	58963					0.08273794997001005
SLRQPGLL	8	Unmodified	_SLRQPGLL_					0	0	0			REV__ENSG00000107560|ENST00000355624|RAB11FIP2	REV__ENSG00000107560|ENST00000355624|RAB11FIP2	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	442.271627	882.528701	-0.345	-0.00015258	0.10734	4.7475E-05	-0.23766	-0.00010511	442.2715133873894	97.162	1.2096	95.402	95.053	96.262	-1.7595	0.06195	0.00099958	NaN	74.517	57	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	357120	+		54093	17850	44703	44740							0.08273794997001005
SLRQPGLL	8	Unmodified	_SLRQPGLL_					0	0	0			REV__ENSG00000107560|ENST00000355624|RAB11FIP2	REV__ENSG00000107560|ENST00000355624|RAB11FIP2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	442.271627	882.528701	0.32435	0.00014345	-0.64415	-0.00028489	-0.3198	-0.00014144	442.27119299952733	97.811	1.264	95.432	95.116	96.38	-2.3786	0.091515	0.00033484	NaN	74.517	58	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	308610	+		54094	17850	44703	44740							0.08273794997001005
SLRRRKPE	8	Unmodified	_SLRRRKPE_					0	0	0			REV__ENSG00000234719|ENST00000399147|NPIPB2	REV__ENSG00000234719|ENST00000399147|NPIPB2	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.8178100585938	2	521.317432	1040.62031	-0.82892	-0.00043213	1.2865	0.00067066	0.45754	0.00023853	521.8189432756967	121.23	1.4357	119.89	119.59	121.03	-1.3479					61	27	4	0	0	0	0.7202	1	11430	11430		39.253	1.4413	1	81220	+		54095	21443	44704	44741	58964	58964					0.10162478414190446
SLRSASKTSP	10	Unmodified	_SLRSASKTSP_					0	0	0			REV__ENST00000309955.7_1_2:201980999-201981149:+|nuORF	REV__ENST00000309955.7_1_2:201980999-201981149:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.2841796875	2	517.285463	1032.55637	-0.38541	-0.00019937	4.3034	0.0022261	3.918	0.0020267	517.2875822015851	58.5	0.82298	58.5	58.069	58.892	0					23	19	2	0	0	0	0.027118	1	5011	5011		19.104	0.84144	1	264410	+		54096	24330	44705	44742	58965	58965					0.041396534665636864
SLRSNRLQN	9	Unmodified	_SLRSNRLQN_					0	0	0		LRTM2|p.M246Sfs*13|1|0.34|ENSG00000166159|chr12:1834344-1834345|-/G|frameshift_variant;ENSG00000166159|ENST00000299194|LRTM2	LRTM2|p.M246Sfs*13|1|0.34|ENSG00000166159|chr12:1834344-1834345|-/G|frameshift_variant	LRTM2|p.M246Sfs*13|1|0.34|ENSG00000166159|chr12:1834344-1834345|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	544.2982788085938	2	544.301978	1086.5894	-1.4048	-0.00076465	-2.8315	-0.0015412	-4.2363	-0.0023059	544.3002102005513	92.774	1.1692	90.813	90.56	91.729	-1.9617					64	23	4	0	0	0	0.28934	1	5935	5935		64.207	0.901	1	877200			54097	6644	44706	44743	58966	58966					0.049572803092814866
SLRSPSRSD	9	Unmodified	_SLRSPSRSD_					0	0	0			REV__nc|ENSG00000177679|A6NNA2|SRRM3	REV__nc|ENSG00000177679|A6NNA2|SRRM3	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.7900085449219	2	502.759612	1003.50467	0.019154	9.6298E-06	-0.88355	-0.00044421	-0.8644	-0.00043458	502.7591760157115	32.59	0.541	32.59	32.303	32.844	0					15	10	2	0	0	0	0.027462	1	1447	1447		34.173	21.213	1	67704	+		54098	22021	44707	44744	58967	58967					0.003059097726691107
SLRTFESIN	9	Unmodified	_SLRTFESIN_					0	0	0			REV__tr|A0A7D6VRR0|A0A7D6VRR0_9CLOTUvrABCsystemproteinAOS=ClostridiumintestinaleOX=36845GN=uvrAPE=3SV=1	REV__tr|A0A7D6VRR0|A0A7D6VRR0_9CLOTUvrABCsystemproteinAOS=ClostridiumintestinaleOX=36845GN=uvrAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.3090209960938	2	533.780013	1065.54547	1.6972	0.00090592	-1.537	-0.00082042	0.16018	8.5501E-05	533.7792227825996	116.78	0.35501	116.78	116.6	116.95	0					12	7	2	0	0	0	0.027447	1	13360	13360		56.721	0	1	137400	+		54099	31437	44708	44745	58968	58968					0.015322510922715082
SLRTGLGFPL	10	Unmodified	_SLRTGLGFPL_					0	0	0			REV__nc|ENSG00000077782|P11362-17|FGFR1	REV__nc|ENSG00000077782|P11362-17|FGFR1	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.8101806640625	2	530.811116	1059.60768	1.2568	0.00066712	2.3164	0.0012296	3.5732	0.0018967	530.8121776672779	129.98	1.6761	128.5	128.12	129.79	-1.4779					73	33	3	0	0	0	0.6349	1	12481	12481		37.812	1.3648	1	95871	+		54100	28735	44709	44746	58969	58969					0.08026022231297247
SLRVILQRT	9	Unmodified	_SLRVILQRT_					0	0	0		MAS1L|p.A336T|1|0.39|ENSG00000204687|chr6:29486897-29486897|C/T|missense_variant	MAS1L|p.A336T|1|0.39|ENSG00000204687|chr6:29486897-29486897|C/T|missense_variant	MAS1L|p.A336T|1|0.39|ENSG00000204687|chr6:29486897-29486897|C/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.811767578125	2	543.343115	1084.67168	-0.10908	-5.927E-05	-0.31745	-0.00017248	-0.42653	-0.00023175	543.3427209360642	46.957	0.40221	46.957	46.762	47.165	0					18	8	3	0	0	0	0.027462	1	3377	3377		37.812	3.639	1	110090			54101	14820	44710	44747	58970	58970					0.13272802388246419
SLRVPSQW	8	Unmodified	_SLRVPSQW_					0	0	0		ENST00000480760.1_1_1:150720322-150737170:-|nuORF;ENSG00000163131|ENST00000368985|CTSS	ENST00000480760.1_1_1:150720322-150737170:-|nuORF	ENST00000480760.1_1_1:150720322-150737170:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.78887939453125	2	486.766709	971.518865	-0.26013	-0.00012662	3.3397	0.0016257	3.0796	0.0014991	486.7682480798279	76.667	0.95348	73.728	73.412	74.366	-2.9389					36	19	2	0	0	0	0.028476	1	6076	6076		44.117	23.635	1	195290			54102	6270	44711	44748	58971	58971					0.03196606991616591
SLRWLKLN	8	Unmodified	_SLRWLKLN_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000584444.5_1_17:18156710-18162004:-|nuORF;ENST00000478416.1_1_17:18157237-18162004:-|nuORF;ENST00000582626.1_1_17:18160183-18162004:-|nuORF	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	OvCa99_classI_Rep5	1	515.3115844726562	2	515.313826	1028.6131	-0.90587	-0.00046681	-3.2015	-0.0016498	-4.1074	-0.0021166	515.3120916584093	26.017	0.74876	26.017	25.594	26.342	0					24	14	2	0	0	0	0.68714	1	614	614		45.952	0	1	387010			54103	7708	44712	44749	58972	58972					0.09993745813744681
SLRWVKRASTV	11	Unmodified	_SLRWVKRASTV_					0	0	0			REV__ENST00000333396.11_1_3:97690796-97691117:-|nuORF	REV__ENST00000333396.11_1_3:97690796-97691117:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	435.2454833984375	3	434.926211	1301.7568	0.72292	0.00031442	-0.53094	-0.00023092	0.19198	8.3497E-05	435.2602748205316	43.759	0.64525	41.049	40.857	41.502	-2.7097					27	12	3	0	0	0	0.025722	1	2496	2496		34.087	0	1	31445	+		54104	24554	44713	44750	58973	58973					0.11799547854002412
SLSALAPSAR	10	Unmodified	_SLSALAPSAR_					0	0	0			REV__nc|ENSG00000137747|Q9BYE2-4|TMPRSS13	REV__nc|ENSG00000137747|Q9BYE2-4|TMPRSS13	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.2572326660156	2	486.777274	971.539994	-1.0978	-0.0005344	-0.14285	-6.9537E-05	-1.2407	-0.00060393	486.7770936756103	36.729	0.62696	36.729	36.532	37.159	0					18	13	2	0	0	0	0.026659	1	1967	1967		37.812	8.6415	1	215990	+		54105	19470	44714	44751	58974	58974					0.053085723004642205
SLSDESKELSL	11	Unmodified	_SLSDESKELSL_					0	0	0			REV__ENST00000520987.1_1_8:101149771-101157363:-|nuORF	REV__ENST00000520987.1_1_8:101149771-101157363:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	604.8298950195312	2	604.306258	1206.59796	-0.8404	-0.00050786	-1.2194	-0.00073691	-2.0598	-0.0012448	604.3037694356499	77.37	0.36333	75.58	75.364	75.727	-1.7894					10	6	2	0	0	0	0.025332	1	6437	6437		58.23	17.452	1	14831	+		54106	20483	44715	44752	58975	58975					0.002927446445710302
SLSDHIVLL	9	Unmodified	_SLSDHIVLL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000506401.6_1_17:48148218-48152910:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	OvCa99_classI_Rep5	1	498.7903747558594	2	498.78985	995.565146	0.37149	0.0001853	1.8539	0.0009247	2.2254	0.00111	498.7906415571132	114.31	0.728	114.31	113.97	114.7	0					33	15	4	0	0	0	0.27546	1	13038	13038		65.803	0	1	468950			54107	863	44716	44753	58976	58976					0.06718627103043673
SLSDHIVLL	9	Unmodified	_SLSDHIVLL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000506401.6_1_17:48148218-48152910:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	OvCa9_classI_Rep2	2	498.7893371582031	2	498.78985	995.565146	-0.69611	-0.00034721	0.14781	7.3725E-05	-0.5483	-0.00027349	498.7898766980179	115.24	3.0674	115.12	114.7	117.77	-0.11777					207	61	7	0	0	0	0.043206	9	10983	10965;10977;10983;10989;10995;11001;11013;11019;11031		123.99	38.629	1	2910400			54108	863	44716	44753	58977;58978;58979;58980;58981;58982;58983;58984;58985	58979					0.06718627103043673
SLSDHIVLL	9	Unmodified	_SLSDHIVLL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000506401.6_1_17:48148218-48152910:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	OvCa9_classI_Rep3	3	498.7892150878906	2	498.78985	995.565146	-0.82368	-0.00041084	0.20105	0.00010028	-0.62263	-0.00031056	498.78992392916325	116.11	3.0188	115.07	114.6	117.62	-1.0414					179	60	5	0	0	0	0.032351	9	8662	8638;8656;8662;8674;8680;8686;8704;8717;8729		133.47	44.826	1	2745900			54109	863	44716	44753	58986;58987;58988;58989;58990;58991;58992;58993;58994	58988					0.06718627103043673
SLSDHIVLL	9	Unmodified	_SLSDHIVLL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000506401.6_1_17:48148218-48152910:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.7891540527344	2	498.78985	995.565146	-0.32841	-0.00016381	-0.93942	-0.00046857	-1.2678	-0.00063238	498.78933667981374	116.43	2.9591	115.07	114.6	117.56	-1.3645					206	56	7	0	0	0	0.048552	6	10904	10846;10868;10880;10892;10904;10916		119.56	45.302	1	3166500			54110	863	44716	44753	58995;58996;58997;58998;58999;59000	58999					0.06718627103043673
SLSDTVEKL	9	Unmodified	_SLSDTVEKL_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-MSMS	OvCa99_classI_Rep5	1	496.2700500488281	2	496.268947	990.523341	1.5909	0.00078952	0.30026	0.00014901	1.8912	0.00093852	496.2690256173855	83.778	0.67332	83.778	83.504	84.177	0					24	15	2	0	0	0	0.070405	1	8731	8731		107.01	10.817	1	1397400			54111	9031	44717	44754	59001	59001					0.02770026623841204
SLSEKTVLL	9	Unmodified	_SLSEKTVLL_					0	0	0		ENSG00000085063|ENST00000642928|CD59	ENSG00000085063|ENST00000642928|CD59	ENSG00000085063|ENST00000642928|CD59	MULTI-MSMS	OvCa99_classI_Rep5	1	495.2989196777344	2	495.297507	988.580462	2.3316	0.0011549	-0.28574	-0.00014153	2.0459	0.0010133	495.29729872388947	86.741	1.241	86.741	86.471	87.712	0					87	29	5	0	0	0	0.075543	1	9166	9166		104.06	2.4561	1	27454000			54112	1722	44718	44755	59002	59002					0.08571493900228688
SLSEKTVLL	9	Unmodified	_SLSEKTVLL_					0	0	0		ENSG00000085063|ENST00000642928|CD59	ENSG00000085063|ENST00000642928|CD59	ENSG00000085063|ENST00000642928|CD59	MULTI-MSMS	OvCa9_classI_Rep2	2	495.2962341308594	2	495.297507	988.580462	1.9287	0.00095527	-2.4176	-0.0011974	-0.48887	-0.00024214	495.29619133273764	88.345	1.7759	86.977	86.641	88.417	-1.3676					106	35	4	0	0	0	0.014964	3	7732	7732;7750;7764		153.04	27.222	1	1318600			54113	1722	44718	44755	59003;59004;59005	59003					0.08571493900228688
SLSEKTVLL	9	Unmodified	_SLSEKTVLL_					0	0	0		ENSG00000085063|ENST00000642928|CD59	ENSG00000085063|ENST00000642928|CD59	ENSG00000085063|ENST00000642928|CD59	MULTI-MSMS	OvCa9_classI_Rep3	3	495.29864501953125	2	495.297507	988.580462	-0.59494	-0.00029467	0.21543	0.0001067	-0.37951	-0.00018797	495.2974998070993	89.05	2.3659	86.919	86.607	88.973	-2.1309					110	46	4	0	0	0	0.03923	3	5443	5438;5443;5459		127.46	10.558	1	2173300			54114	1722	44718	44755	59006;59007;59008	59007					0.08571493900228688
SLSEKTVLL	9	Unmodified	_SLSEKTVLL_					0	0	0		ENSG00000085063|ENST00000642928|CD59	ENSG00000085063|ENST00000642928|CD59	ENSG00000085063|ENST00000642928|CD59	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.2985534667969	2	495.297507	988.580462	0.62327	0.0003087	-1.1454	-0.00056733	-0.52216	-0.00025862	495.296795507755	89.52	1.9685	86.945	86.656	88.624	-2.575					102	38	4	0	0	0	0.03923	2	7694	7694;7719		127.46	6.8407	1	1899800			54115	1722	44718	44755	59009;59010	59009					0.08571493900228688
SLSFCGNNI	9	Unmodified	_SLSFCGNNI_					0	0	0		ENSG00000069431|ENST00000261200|ABCC9;ABCC9|p.D1415Gfs*2|1|0.26|ENSG00000069431|chr12:21809923-21809924|-/C|frameshift_variant;nc|ENSG00000069431|O60706|ABCC9	ENSG00000069431|ENST00000261200|ABCC9	ENSG00000069431|ENST00000261200|ABCC9	MULTI-SECPEP	OvCa9_classI_Rep3	3	478.301513671875	2	477.72111	953.427666	-0.37686	-0.00018003	1.6847	0.0008048	1.3078	0.00062477	477.72169736499376	86.999	0.7102	84.822	84.531	85.241	-2.1768					22	13	2	0	0	0	0.027462	1	5240	5240		20.947	0	1	30166			54116	1409	44719	44756	59011	59011					-0.05091024768034913
SLSFFLGLI	9	Unmodified	_SLSFFLGLI_					0	0	0			REV__NAV2|p.D962Ifs*69|1|0.03|ENSG00000166833|chr11:20036003-20036004|-/CATTCTTTTTCATCTTTTTA|frameshift_variant;REV__ENSG00000166833|ENST00000349880|NAV2;REV__ENSG00000067798|ENST00000397909|NAV3	REV__ENSG00000166833|ENST00000349880|NAV2	MULTI-MSMS	OvCa9_classI_Rep3	3	498.7892761230469	2	498.791861	995.569169	-0.82368	-0.00041084	-3.8314	-0.0019111	-4.6551	-0.0023219	498.78992392916325	116.11	3.0188	115.07	114.6	117.62	-1.0414					179	60	5	0	0	0	0.32337	1	8724	8724		60.294	0	1	2745900	+		54117	21225;28697;16840	44720	44757	59012	59012					0.07120716596762122
SLSFIDAGGLL	11	Unmodified	_SLSFIDAGGLL_					0	0	0			REV__ENSG00000176200|ENST00000313253|OR4D11	REV__ENSG00000176200|ENST00000313253|OR4D11	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.2816772460938	2	546.800414	1091.58628	1.1264	0.00061593	-4.2604	-0.0023296	-3.134	-0.0017136	546.7977180467042	144.48	0.67874	144.48	144.26	144.94	0					22	13	3	0	0	0	0.026056	1	16923	16923		20.947	0	1	61066	+		54118	21937	44721	44758	59013	59013					0.04414592411899321
SLSFLPFSFL	10	Unmodified	_SLSFLPFSFL_					0	0	0		ENST00000498628.6_2_9:21994925-21994973:-|nuORF	ENST00000498628.6_2_9:21994925-21994973:-|nuORF	ENST00000498628.6_2_9:21994925-21994973:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.3192749023438	2	579.3157	1156.61685	-0.80183	-0.00046451	4.3219	0.0025038	3.5201	0.0020393	579.3195525808989	102.03	0.88783	99.836	99.471	100.36	-2.1994					27	16	2	0	0	0	0.53885	1	9192	9192		49.442	5.3247	1	128720			54119	12829	44722	44759	59014	59014					0.04480370796954958
SLSFMNPRL	9	Unmodified	_SLSFMNPRL_					0	0	0		ENSG00000185009|ENST00000355264|AP3M1;AP3M1|p.G307Rfs*5|1|0.04|ENSG00000185009|chr10:74126240-74126241|-/CT|frameshift_variant;ENST00000480373.1_1_10:75888732-75889691:-|nuORF	ENSG00000185009|ENST00000355264|AP3M1	ENSG00000185009|ENST00000355264|AP3M1	MULTI-MSMS	OvCa99_classI_Rep5	1	532.7831420898438	2	532.781502	1063.54845	-0.070036	-3.7314E-05	0.67431	0.00035926	0.60427	0.00032194	532.7818090055088	105.1	0.78297	105.1	104.62	105.4	0					36	17	3	0	0	0	0.075543	1	11796	11796		104.06	35.27	1	973560			54120	8211	44723	44760	59015	59015					0.019218029454577845
SLSFVRSGF	9	Unmodified	_SLSFVRSGF_					0	0	0		ENSG00000108231|ENST00000371418|LGI1;nc|ENSG00000108231|O95970-3|LGI1;nc|ENSG00000108231|O95970-2|LGI1	ENSG00000108231|ENST00000371418|LGI1	ENSG00000108231|ENST00000371418|LGI1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.80810546875	2	500.266542	998.51853	2.2654	0.0011333	-0.37269	-0.00018644	1.8927	0.00094685	500.266096507074	88.979	0.48201	88.979	88.637	89.119	0					23	11	3	0	0	0	0.027462	1	9470	9470		44.117	0	1	419690			54121	2640	44724	44761	59016	59016					0.01921187271773306
SLSGEELETL	10	Unmodified	_SLSGEELETL_					0	0	0		ENSG00000055147|ENST00000351797|FAM114A2;ENST00000518735.1_1_5:153405944-153406840:-|nuORF	ENSG00000055147|ENST00000351797|FAM114A2	ENSG00000055147|ENST00000351797|FAM114A2	MULTI-MSMS	OvCa9_classI_Rep4_	4	539.2711181640625	2	539.269144	1076.52373	-0.34888	-0.00018814	1.1624	0.00062686	0.81355	0.00043872	539.2695931803694	66.957	1.5716	63.467	63.148	64.72	-3.4902					57	31	3	0	0	0	0.41408	1	4895	4895		66.429	9.7082	1	614020			54122	1220	44725	44762	59017	59017					-0.011465984469396062
SLSGEELETL	10	Unmodified	_SLSGEELETL_					0	0	0		ENSG00000055147|ENST00000351797|FAM114A2;ENST00000518735.1_1_5:153405944-153406840:-|nuORF	ENSG00000055147|ENST00000351797|FAM114A2	ENSG00000055147|ENST00000351797|FAM114A2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	539.269144	1076.52373	-0.05085	-2.7422E-05	1.279	0.00068971	1.2281	0.00066229	539.2695839296919	66.329	0.94436	63.633	63.22	64.164	-2.6958	0.083165	7.9192E-05	NaN	66.429	46	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	108820			54123	1220	44725	44762							-0.011465984469396062
SLSGRPLKV	9	Unmodified	_SLSGRPLKV_					0	0	0		HNRNPM|p.L411Sfs*117|1|0.08|ENSG00000099783|chr19:8485658-8485658|C/-|frameshift_variant;ENSG00000099783|ENST00000325495|HNRNPM;nc|ENSG00000099783|P52272-2|HNRNPM;ENST00000597813.5_1_19:8528492-8528615:+|nuORF	HNRNPM|p.L411Sfs*117|1|0.08|ENSG00000099783|chr19:8485658-8485658|C/-|frameshift_variant	HNRNPM|p.L411Sfs*117|1|0.08|ENSG00000099783|chr19:8485658-8485658|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	478.7991943359375	2	478.798009	955.581465	-0.016059	-7.6889E-06	-0.29286	-0.00014022	-0.30892	-0.00014791	478.7978201272586	51.187	1.4847	51.187	50.949	52.434	0					89	34	4	0	0	0	0.12515	1	3940	3940		90.37	13.596	1	11795000			54124	1976	44726	44763	59018	59018					0.10189753059785289
SLSIMRVGQTL	11	Unmodified	_SLSIMRVGQTL_					0	0	0			REV__chr17:39995068-39995424|127|20.38|0.49|5.39|+|2|PSMD3,PSMD3|1	REV__chr17:39995068-39995424|127|20.38|0.49|5.39|+|2|PSMD3,PSMD3|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	602.82080078125	2	602.839548	1203.66454	-0.15047	-9.0709E-05	-1.4397	-0.00086791	-1.5902	-0.00095862	603.3406114278719	106.45	0.19937	104.43	104.31	104.51	-2.0161					5	3	2	0	0	0	0.023097	1	9682	9682		76.17	10.704	1	7657.6	+		54125	15945	44727	44764	59019	59019					0.07085701725509352
SLSKSKVKL	9	Unmodified	_SLSKSKVKL_					0	0	0		MYH6|p.K1758Lfs*37|1|0.03|ENSG00000197616|chr14:23384933-23384934|-/TGAG|frameshift_variant;ENSG00000197616|ENST00000405093|MYH6;MYH6|p.S1271Cfs*26|1|0.05|ENSG00000197616|chr14:23389640-23389641|-/GCTCCCGC|frameshift_variant	MYH6|p.K1758Lfs*37|1|0.03|ENSG00000197616|chr14:23384933-23384934|-/TGAG|frameshift_variant	MYH6|p.K1758Lfs*37|1|0.03|ENSG00000197616|chr14:23384933-23384934|-/TGAG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	495.2982482910156	2	495.321317	988.628081	-0.5829	-0.00028872	0.76568	0.00037926	0.18278	9.0534E-05	495.3215991831884	89.114	0.19753	86.983	86.846	87.044	-2.1309					6	3	2	0	0	0	0.027353	1	5448	5448		71.877	0.58177	1	7489.6			54126	8730	44728	44765	59020	59020					0.13331192891098453
SLSKVIPEKKI	11	Unmodified	_SLSKVIPEKKI_					0	0	0			REV__tr|A0A7D6VRF7|A0A7D6VRF7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00700PE=4SV=1	REV__tr|A0A7D6VRF7|A0A7D6VRF7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00700PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	620.8318481445312	2	621.395013	1240.77547	-1.2502	-0.00077687	0.12569	7.8105E-05	-1.1245	-0.00069876	621.3949801709946	99.101	0.39811	98.208	98.007	98.405	-0.89305					10	7	2	0	0	0	0.025822	1	9028	9028		54.722	0	1	14993	+		54127	31411	44729	44766	59021	59021					0.1647166470522734
SLSLQASDF	9	Unmodified	_SLSLQASDF_					0	0	0		ENSG00000138162|ENST00000369005|TACC2;TACC2|p.S2567Ifs*13|1|0.16|ENSG00000138162|chr10:122226455-122226456|-/A|frameshift_variant;nc|ENSG00000138162|O95359-3|TACC2;nc|ENSG00000138162|O95359-6|TACC2;nc|ENSG00000138162|O95359-1|TACC2;nc|ENSG00000138162|O95359-5|TACC2	ENSG00000138162|ENST00000369005|TACC2	ENSG00000138162|ENST00000369005|TACC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.784423828125	2	484.24019	966.465826	-0.54434	-0.00026359	1.3914	0.00067379	0.8471	0.0004102	484.2406182534277	38.184	0.4154	38.184	38.024	38.44	0					16	8	3	0	0	0	0.027453	1	2156	2156		45.972	6.7194	1	87124			54128	4664	44730	44767	59022	59022					-0.01874815581720668
SLSLSPLLPL	10	Unmodified	_SLSLSPLLPL_					0	0	0		ENST00000511802.5_1_5:10353827-10401026:+|nuORF	ENST00000511802.5_1_5:10353827-10401026:+|nuORF	ENST00000511802.5_1_5:10353827-10401026:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.324462890625	2	520.323525	1038.6325	-0.019937	-1.0373E-05	-3.3807	-0.001759	-3.4006	-0.0017694	520.3217162232052	60.154	1.2388	56.724	56.456	57.694	-3.43					47	24	2	0	0	0	0.6104	1	4066	4066		40.778	11.629	1	846470			54129	12987	44731	44768	59023	59023					0.11472657313993295
SLSLVFHAI	9	Unmodified	_SLSLVFHAI_					0	0	0		ENST00000493417.5_1_9:132839594-132891041:+|nuORF;ENSG00000148358|ENST00000347136|GPR107;nc|ENSG00000148358|Q5VW38|GPR107	ENST00000493417.5_1_9:132839594-132891041:+|nuORF	ENST00000493417.5_1_9:132839594-132891041:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.7865295410156	2	493.78711	985.559667	0.40814	0.00020153	-0.78909	-0.00038964	-0.38096	-0.00018811	493.786533625888	123	1.5868	121.63	121.36	122.94	-1.3666					76	31	4	0	0	0	0.44294	1	11636	11636		47.916	1.9636	1	252900			54130	5405	44732	44769	59024	59024					0.06630948311226348
SLSLVLILN	9	Unmodified	_SLSLVLILN_					0	0	0			REV__ENSG00000214285|ENST00000398023|NPS	REV__ENSG00000214285|ENST00000398023|NPS	MULTI-SECPEP	OvCa9_classI_Rep3	3	485.78857421875	2	486.310418	970.606283	-0.9492	-0.00046161	0.84521	0.00041104	-0.10399	-5.0572E-05	486.3107820354896	88.295	1.3811	86.164	85.906	87.287	-2.1309					48	27	3	0	0	0	0.027441	1	5330	5330		29.15	10.887	1	81870	+		54131	16328	44733	44770	59025	59025					0.11980388142524134
SLSNFLSRKPK	11	Unmodified	_SLSNFLSRKPK_					0	0	0		nc|ENSG00000178199|A2A288-4|ZC3H12D;ENSG00000178199|ENST00000409806|ZC3H12D	nc|ENSG00000178199|A2A288-4|ZC3H12D	nc|ENSG00000178199|A2A288-4|ZC3H12D	MULTI-SECPEP	OvCa99_classI_Rep5	1	427.2451171875	3	426.250583	1275.72992	-0.08722	-3.7178E-05	0.24287	0.00010352	0.15565	6.6344E-05	426.25048026036535	47.666	0.43237	47.666	47.465	47.897	0					19	9	3	0	0	0	0.025524	1	3452	3452		14.243	0	1	133030			54132	7738	44735	44771	59026	59026					0.10308439242839995
SLSPSSTRTRP	11	Unmodified	_SLSPSSTRTRP_					0	0	0			REV__ENST00000450554.6_1_19:56165635-56166109:+|nuORF	REV__ENST00000450554.6_1_19:56165635-56166109:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	594.8226318359375	2	594.820201	1187.62585	-1.5219	-0.00090526	3.6528	0.0021727	2.1309	0.0012675	594.8223299589429	85.766	2.3277	84.275	83.702	86.03	-1.4906					127	45	5	0	0	0	0.4646	1	7420	7420		56.434	2.8369	1	948050	+		54133	25961	44736	44772	59027	59027					0.03954112415317468
SLSQVFLHL	9	Unmodified	_SLSQVFLHL_					0	0	0		nc|ENSG00000198604|Q9NRL2-2|BAZ1A;ENSG00000198604|ENST00000360310|BAZ1A	nc|ENSG00000198604|Q9NRL2-2|BAZ1A	nc|ENSG00000198604|Q9NRL2-2|BAZ1A	MULTI-MSMS	OvCa99_classI_Rep5	1	522.2975463867188	2	522.297842	1042.58113	1.2015	0.00062753	-0.9228	-0.00048198	0.27868	0.00014555	522.2967758259148	125.16	1.1994	125.16	124.84	126.04	0					72	28	4	0	0	0	0.12365	2	14462	14440;14462		90.777	24.973	1	520440			54134	8834	44737	44773	59028;59029	59029					0.06154333339964069
SLSRVMIHV	9	Unmodified	_SLSRVMIHV_					0	0	0		ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	MULTI-MSMS	OvCa99_classI_Rep5	1	521.2958984375	2	521.297319	1040.58008	0.66163	0.00034491	0.80788	0.00042115	1.4695	0.00076605	521.2975859631948	74.604	1.1162	74.604	74.214	75.33	0					62	27	4	0	0	0	0.37135	1	7393	7393		54.776	10.66	1	3131600			54135	5047	44738	44774	59030	59030					0.06141795699386421
SLSSLVVQL	9	Unmodified	_SLSSLVVQL_					0	0	0		nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2;ENST00000550859.5_1_12:56575573-56583167:-|nuORF;SMARCC2|p.E354Gfs*2|1|0.1|ENSG00000139613|chr12:56180997-56180997|T/-|frameshift_variant;SMARCC2|p.N351Rfs*40|1|0.18|ENSG00000139613|chr12:56181006-56181007|-/CTCTTGACCTCGTGATCCGCCTGCC|frameshift_variant;SMARCC2|p.H423Pfs*47|1|0.04|ENSG00000139613|chr12:56178446-56178446|T/-|frameshift_variant	nc|ENSG00000139613|Q8TAQ2-2|SMARCC2	nc|ENSG00000139613|Q8TAQ2-2|SMARCC2	MULTI-MSMS	OvCa99_classI_Rep5	1	473.2854919433594	2	473.2844	944.554247	2.0822	0.00098548	0.16285	7.7076E-05	2.2451	0.0010626	473.28432225570396	137.75	0.76125	137.75	137.5	138.26	0					36	16	3	0	0	0	0.2422	1	16084	16084		69.628	3.1983	1	300660			54136	4787	44739	44775	59031	59031					0.07975224728750163
SLSSLVVQL	9	Unmodified	_SLSSLVVQL_					0	0	0		nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2;ENST00000550859.5_1_12:56575573-56583167:-|nuORF;SMARCC2|p.E354Gfs*2|1|0.1|ENSG00000139613|chr12:56180997-56180997|T/-|frameshift_variant;SMARCC2|p.N351Rfs*40|1|0.18|ENSG00000139613|chr12:56181006-56181007|-/CTCTTGACCTCGTGATCCGCCTGCC|frameshift_variant;SMARCC2|p.H423Pfs*47|1|0.04|ENSG00000139613|chr12:56178446-56178446|T/-|frameshift_variant	nc|ENSG00000139613|Q8TAQ2-2|SMARCC2	nc|ENSG00000139613|Q8TAQ2-2|SMARCC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.2842712402344	2	473.2844	944.554247	2.9124	0.0013784	-3.1343	-0.0014834	-0.22192	-0.00010503	473.2826945129247	136.88	1.1673	135.34	135.03	136.2	-1.5437					38	23	3	0	0	0	0.27001	1	13289	13289		66.429	2.222	1	65667			54137	4787	44739	44775	59032	59032					0.07975224728750163
SLSSLVVQL	9	Unmodified	_SLSSLVVQL_					0	0	0		nc|ENSG00000139613|Q8TAQ2-2|SMARCC2;nc|ENSG00000139613|Q8TAQ2-3|SMARCC2;nc|ENSG00000139613|Q8TAQ2|SMARCC2;ENSG00000139613|ENST00000550164|SMARCC2;ENST00000550859.5_1_12:56575573-56583167:-|nuORF;SMARCC2|p.E354Gfs*2|1|0.1|ENSG00000139613|chr12:56180997-56180997|T/-|frameshift_variant;SMARCC2|p.N351Rfs*40|1|0.18|ENSG00000139613|chr12:56181006-56181007|-/CTCTTGACCTCGTGATCCGCCTGCC|frameshift_variant;SMARCC2|p.H423Pfs*47|1|0.04|ENSG00000139613|chr12:56178446-56178446|T/-|frameshift_variant	nc|ENSG00000139613|Q8TAQ2-2|SMARCC2	nc|ENSG00000139613|Q8TAQ2-2|SMARCC2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	473.2844	944.554247	-0.32941	-0.0001559	0.17528	8.2957E-05	-0.15413	-7.2946E-05	473.2843446598847	135.72	0.83543	135.5	135.22	136.06	-0.22696	0.085015	0.00073652	NaN	66.429	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48579			54138	4787	44739	44775							0.07975224728750163
SLSSYASNLT	10	Unmodified	_SLSSYASNLT_					0	0	0			REV__tr|A0A7D6VYU4|A0A7D6VYU4_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17860PE=4SV=1	REV__tr|A0A7D6VYU4|A0A7D6VYU4_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17860PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.8038330078125	2	521.756204	1041.49785	-1.0405	-0.0005429	-2.7074	-0.0014126	-3.7479	-0.0019555	521.7547001993183	38.123	0.4516	38.123	37.896	38.348	0					19	9	3	0	0	0	0.027001	1	2141	2141		28.081	6.1216	1	73998	+		54139	31826	44740	44776	59033	59033					-0.021234478985888927
SLSTFAQM	8	Unmodified	_SLSTFAQM_					0	0	0		ENST00000469726.5_1_1:17942561-18023872:+|nuORF	ENST00000469726.5_1_1:17942561-18023872:+|nuORF	ENST00000469726.5_1_1:17942561-18023872:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	443.7087097167969	2	442.712753	883.410954	-0.41885	-0.00018543	2.5379	0.0011236	2.1191	0.00093815	442.71402269914284	94.403	0.54179	91.935	91.618	92.16	-2.4685					14	10	2	0	0	0	0.028476	1	8262	8262		29.15	7.1897	1	26294			54140	12349	44741	44777	59034	59034					-0.03541525653986355
SLSTLSPRPA	10	Unmodified	_SLSTLSPRPA_					0	0	0			REV__ENST00000565736.1_1_16:29815990-29816668:+|nuORF	REV__ENST00000565736.1_1_16:29815990-29816668:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	514.8103637695312	2	514.790381	1027.56621	0.48443	0.00024938	2.4305	0.0012512	2.9149	0.0015006	514.7913099501037	113.67	0.44507	113.55	113.37	113.81	-0.11777					18	8	3	0	0	0	0.026956	1	10817	10817		34.173	8.5985	1	43070	+		54141	27688	44742	44778	59035	59035					0.05352841471949432
SLSVLVRQ	8	Unmodified	_SLSVLVRQ_					0	0	0			REV__ENST00000477632.5_1_2:70037634-70052644:+|nuORF	REV__ENST00000477632.5_1_2:70037634-70052644:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	452.2303466796875	2	451.276909	900.539266	2.9033	0.0013102	-3.4332	-0.0015493	-0.52995	-0.00023915	451.2753057658729	43.302	0.24792	40.592	40.41	40.658	-2.7097					6	4	2	0	0	0	0.028476	1	2376	2376		31.955	7.7521	1	8708.6	+		54142	22883	44743	44779	59036	59036					0.08501777651417797
SLSVVRSSF	9	Unmodified	_SLSVVRSSF_					0	0	0			REV__ENSG00000101361|ENST00000329276|NOP56	REV__ENSG00000101361|ENST00000329276|NOP56	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.7261657714844	2	491.271824	980.529095	0.047244	2.321E-05	-0.30107	-0.00014791	-0.25382	-0.0001247	491.27143061250223	62.494	1.7358	59.036	58.197	59.933	-3.4577					69	35	4	0	0	0	0.027433	1	4270	4270		64.207	16.292	1	196700	+		54143	17495	44744	44780	59037	59037					0.03805169926192775
SLSVVRSSF	9	Unmodified	_SLSVVRSSF_					0	0	0			REV__ENSG00000101361|ENST00000329276|NOP56	REV__ENSG00000101361|ENST00000329276|NOP56	MULTI-MATCH	OvCa9_classI_Rep2	2		2	491.271824	980.529095	-0.93711	-0.00046038	2.8598	0.001405	1.9227	0.00094458	491.27303323235066	61.74	1.3165	58.981	58.62	59.937	-2.7593	-0.027531	0.0023029	NaN	64.207	34	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27795	+		54144	17495	44744	44780							0.03805169926192775
SLTAHLHQA	9	Unmodified	_SLTAHLHQA_					0	0	0		ENSG00000144021|ENST00000488633|CIAO1	ENSG00000144021|ENST00000488633|CIAO1	ENSG00000144021|ENST00000488633|CIAO1	MULTI-MSMS	OvCa99_classI_Rep5	1	489.2618408203125	2	489.261791	976.509028	-0.97305	-0.00047608	0.49988	0.00024457	-0.47317	-0.0002315	489.2618511714678	42.046	0.43282	42.046	41.853	42.286	0					20	9	3	0	0	0	0.10363	1	2677	2677		96.19	5.4138	1	473990			54145	5117	44745	44781	59038	59038					0.01983418986230845
SLTATSNHAL	10	Unmodified	_SLTATSNHAL_					0	0	0			REV__VPS11|p.H291Tfs*36|1|0.04|ENSG00000160695|chr11:119081155-119081155|C/-|frameshift_variant	REV__VPS11|p.H291Tfs*36|1|0.04|ENSG00000160695|chr11:119081155-119081155|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	507.7626647949219	2	507.764363	1013.51417	-0.98874	-0.00050205	-1.5604	-0.00079233	-2.5492	-0.0012944	507.76348195987015	116.06	1.5323	115.02	114.7	116.23	-1.0414					85	30	4	0	0	0	0.69073	1	8664	8664		31.53	1.2121	1	238760	+		54146	20669	44746	44782	59039	59039					0.007956780581821477
SLTGHISTV	9	Unmodified	_SLTGHISTV_					0	0	0		ENSG00000171566|ENST00000499023|PLRG1;nc|ENSG00000171566|O43660-2|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	ENSG00000171566|ENST00000499023|PLRG1	MULTI-MSMS	OvCa99_classI_Rep5	1	457.75177001953125	2	457.750724	913.486896	0.21978	0.00010061	0.18893	8.6481E-05	0.40871	0.00018709	457.7506454577993	64.682	0.77271	64.682	64.417	65.19	0					41	18	3	0	0	0	0.18193	1	5886	5886		79.451	10.966	1	2247100			54147	7214	44747	44783	59040	59040					0.02669194517818596
SLTGRLDEV	9	Unmodified	_SLTGRLDEV_					0	0	0		ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6	ENSG00000166888|ENST00000300134|STAT6	ENSG00000166888|ENST00000300134|STAT6	MULTI-MSMS	OvCa99_classI_Rep5	1	495.2629699707031	2	495.266739	988.518924	2.3265	0.0011522	0.56854	0.00028158	2.8951	0.0014338	495.26670069225105	75.975	0.75755	75.975	75.723	76.48	0					53	18	5	0	0	0	0.1149	1	7583	7583		93.143	0	1	3088500			54148	6730	44748	44784	59041	59041					0.024205622009503713
SLTKGTLLIV	10	Unmodified	_SLTKGTLLIV_					0	0	0			REV__tr|A0A553SNT9|A0A553SNT9_NIACIDNAtranslocaseFtsKOS=NialliacirculansOX=1397GN=CEQ21_25185PE=3SV=1	REV__tr|A0A553SNT9|A0A553SNT9_NIACIDNAtranslocaseFtsKOS=NialliacirculansOX=1397GN=CEQ21_25185PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.823486328125	2	522.8368	1043.65905	0.67189	0.00035129	4.4001	0.0023005	5.072	0.0026518	522.8392343377353	80.539	0.3488	78.844	78.719	79.067	-1.6951					8	6	2	0	0	0	0.027422	1	6815	6815		71.877	25.905	1	13915	+		54149	30452	44749	44785	59042	59042					0.13896346205319787
SLTKGTLLIV	10	Unmodified	_SLTKGTLLIV_					0	0	0			REV__tr|A0A553SNT9|A0A553SNT9_NIACIDNAtranslocaseFtsKOS=NialliacirculansOX=1397GN=CEQ21_25185PE=3SV=1	REV__tr|A0A553SNT9|A0A553SNT9_NIACIDNAtranslocaseFtsKOS=NialliacirculansOX=1397GN=CEQ21_25185PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.824951171875	2	522.8368	1043.65905	-1.2136	-0.00063451	3.2838	0.0017169	2.0702	0.0010824	522.8384561174271	81.573	0.14735	78.862	78.788	78.936	-2.7106					4	2	2	0	0	0	0.026665	1	6709	6709		42.396	1.618	1	9656.1	+		54150	30452	44749	44785	59043	59043					0.13896346205319787
SLTKMYVI	8	Unmodified	_SLTKMYVI_					0	0	0			REV__tr|A0A7D7AD35|A0A7D7AD35_9CLOTSporecortexbiosynthesisproteinYabQOS=ClostridiumintestinaleOX=36845GN=yabQPE=4SV=1	REV__tr|A0A7D7AD35|A0A7D7AD35_9CLOTSporecortexbiosynthesisproteinYabQOS=ClostridiumintestinaleOX=36845GN=yabQPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	477.7722473144531	2	477.770071	953.52559	-0.12631	-6.0347E-05	3.8531	0.0018409	3.7268	0.0017806	477.7718338783036	72.751	2.3552	70.351	69.697	72.052	-2.3999					96	44	3	0	0	0	0.66704	1	5898	5898		50.025	0.58299	1	659350	+		54151	32692	44750	44786	59044	59044					0.046967838279670104
SLTKNRIPLPI	11	Unmodified	_SLTKNRIPLPI_					0	0	0			REV__ENSG00000102805|ENST00000377453|CLN5	REV__ENSG00000102805|ENST00000377453|CLN5	MULTI-MSMS	OvCa9_classI_Rep2	2	626.3924560546875	2	626.392805	1250.77106	-5.6586	-0.0035445	-3.473	-0.0021755	-9.1316	-0.00572	626.8920656002647	163.54	1.1058	163.31	162.97	164.08	-0.22697					56	36	2	0	0	0	0.69081	1	16678	16678		32.812	13.709	1	65883	+		54152	17574	44751	44787	59045	59045					0.15570200282331825
SLTLIGVTSSR	11	Unmodified	_SLTLIGVTSSR_					0	0	0			REV__ENST00000380637.7_1_21:40834409-40883616:+|nuORF	REV__ENST00000380637.7_1_21:40834409-40883616:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3299560546875	2	567.32987	1132.64519	-2.3399	-0.0013275	2.1766	0.0012349	-0.16324	-9.2608E-05	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.70142	2	14782	14465;14782		29.17	1.2878	1	241060	+		54153	25180	44752	44788	59046;59047	59047					0.08417068706239661
SLTLKVASLAM	11	Unmodified	_SLTLKVASLAM_					0	0	0		ENST00000495483.5_2_1:161137139-161146869:+|nuORF	ENST00000495483.5_2_1:161137139-161146869:+|nuORF	ENST00000495483.5_2_1:161137139-161146869:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3287353515625	2	567.333567	1132.65258	-2.3399	-0.0013275	-4.3394	-0.0024619	-6.6793	-0.0037894	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.7046	1	14668	14668		28.081	1.3886	1	241060			54154	12778	44753	44789	59048	59048					0.09156084982282664
SLTLNLPNI	9	Unmodified	_SLTLNLPNI_					0	0	0			REV__ENSG00000005884|ENST00000320031|ITGA3	REV__ENSG00000005884|ENST00000320031|ITGA3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.32464599609375	2	492.78985	983.565146	-0.52461	-0.00025852	0.5652	0.00027852	0.04059	2.0003E-05	492.789886867955	80.984	1.2703	78.273	77.858	79.128	-2.7106					48	25	3	0	0	0	0.027418	1	6622	6622		58.782	5.4305	1	384100	+		54155	16405	44754	44790	59049	59049					0.07270627103048355
SLTLPTLTAL	10	Unmodified	_SLTLPTLTAL_					0	0	0		ENST00000533762.5_3_1:26149812-26150235:+|nuORF	ENST00000533762.5_3_1:26149812-26150235:+|nuORF	ENST00000533762.5_3_1:26149812-26150235:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.296875	2	515.313158	1028.61176	-0.81649	-0.00042075	0.44667	0.00023018	-0.36981	-0.00019057	515.3131589102843	102.76	0.83783	102.08	101.84	102.67	-0.68459					39	16	3	0	0	0	0.026635	1	9515	9515		47.657	9.8458	1	86514			54156	13345	44755	44791	59050	59050					0.09860066934311362
SLTLPTLTAL	10	Unmodified	_SLTLPTLTAL_					0	0	0		ENST00000533762.5_3_1:26149812-26150235:+|nuORF	ENST00000533762.5_3_1:26149812-26150235:+|nuORF	ENST00000533762.5_3_1:26149812-26150235:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.2987670898438	2	515.313158	1028.61176	0.64416	0.00033194	-1.3625	-0.00070212	-0.71835	-0.00037017	515.3122289781483	103.59	1.0496	102.15	101.81	102.86	-1.4347					41	18	3	0	0	0	0.026523	1	7230	7230		40.778	0	1	131440			54157	13345	44755	44791	59051	59051					0.09860066934311362
SLTNRRAVLLP	11	Unmodified	_SLTNRRAVLLP_					0	0	0		chr14:94062621-94065779|133|19.53|0.06|8.3|-|2|TE_info:L1PB1,L1PB1_dup11175,L1,LINE,donor,+,94065779,94071367|DDX24,None|90	chr14:94062621-94065779|133|19.53|0.06|8.3|-|2|TE_info:L1PB1,L1PB1_dup11175,L1,LINE,donor,+,94065779,94071367|DDX24,None|90	chr14:94062621-94065779|133|19.53|0.06|8.3|-|2|TE_info:L1PB1,L1PB1_dup11175,L1,LINE,donor,+,94065779,94071367|DDX24,None|90	MULTI-MSMS	OvCa9_classI_Rep2	2	413.92315673828125	3	413.922578	1238.7459	0.26902	0.00011136	-0.32433	-0.00013425	-0.05531	-2.2894E-05	413.9224547119415	58.292	1.633	55.5	55.122	56.755	-2.792					103	31	5	0	0	0	0.69735	1	4219	4219		30.569	1.0181	1	599060			54158	355	44756	44792	59052	59052					0.1360814547974769
SLTNTDLKV	9	Unmodified	_SLTNTDLKV_					0	0	0		MED16-POLR2E|1|fusion;nc|ENSG00000175221|Q9Y2X0-5|MED16;nc|ENSG00000175221|Q9Y2X0-4|MED16;nc|ENSG00000175221|Q9Y2X0-2|MED16;nc|ENSG00000175221|Q9Y2X0-3|MED16;ENSG00000175221|ENST00000325464|MED16	MED16-POLR2E|1|fusion	MED16-POLR2E|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	495.77838134765625	2	495.776939	989.539325	2.4308	0.0012051	-0.48097	-0.00023846	1.9498	0.00096666	495.77646300687076	75.856	0.31242	75.856	75.601	75.913	0					13	7	2	0	0	0	0.13326	1	7574	7574		88.177	19.39	1	2426400			54159	7527	44757	44793	59053	59053					0.04413732860757591
SLTQYIMS	8	Unmodified	_SLTQYIMS_					0	0	0		L1MCa_dup1455|chr3:161109768-161111719:+|1.3579652635712427|0.3175433071941228|2.1|429.0|57|3|sense	L1MCa_dup1455|chr3:161109768-161111719:+|1.3579652635712427|0.3175433071941228|2.1|429.0|57|3|sense	L1MCa_dup1455|chr3:161109768-161111719:+|1.3579652635712427|0.3175433071941228|2.1|429.0|57|3|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.772705078125	2	471.733686	941.452819	0.80434	0.00037943	-0.64691	-0.00030517	0.15743	7.4266E-05	471.7333502274288	65.061	0.14384	61.576	61.456	61.599	-3.4854					4	2	2	0	0	0	0.028476	1	4658	4658		19.36	0	1	8013.1			54160	14611	44758	44794	59054	59054					-0.020249699654414144
SLTRDALEV	9	Unmodified	_SLTRDALEV_					0	0	0			REV__ENST00000493730.1_1_9:140069903-140070286:-|nuORF	REV__ENST00000493730.1_1_9:140069903-140070286:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	502.2750244140625	2	502.274564	1002.53457	-0.51252	-0.00025743	0.022578	1.134E-05	-0.48994	-0.00024608	502.2744215963091	78.731	1.5525	76.378	75.998	77.551	-2.3527					73	30	4	0	0	0	0.35444	1	4215	4215		56.721	0	1	727880	+		54161	21943	44759	44795	59055	59055					0.033408487179940494
SLTRDALEV	9	Unmodified	_SLTRDALEV_					0	0	0			REV__ENST00000493730.1_1_9:140069903-140070286:-|nuORF	REV__ENST00000493730.1_1_9:140069903-140070286:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.27685546875	2	502.274564	1002.53457	-0.88603	-0.00044503	-0.11995	-6.0249E-05	-1.006	-0.00050528	502.2743814538115	79.525	1.6887	76.774	76.322	78.011	-2.7514					74	34	3	0	0	0	0.37135	1	6448	6448		54.776	1.4249	1	1032500	+		54162	21943	44759	44795	59056	59056					0.033408487179940494
SLTRIPGASI	10	Unmodified	_SLTRIPGASI_					0	0	0			REV__tr|A0A553SFI4|A0A553SFI4_NIACIEnoyl-[acyl-carrier-protein]reductase[NADH]OS=NialliacirculansOX=1397GN=fabIPE=3SV=1	REV__tr|A0A553SFI4|A0A553SFI4_NIACIEnoyl-[acyl-carrier-protein]reductase[NADH]OS=NialliacirculansOX=1397GN=fabIPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.8004150390625	2	507.800749	1013.58694	-1.3545	-0.0006878	0.98637	0.00050088	-0.3681	-0.00018692	507.8011650052205	54.128	1.8434	51.314	50.529	52.372	-2.8139					84	36	4	0	0	0	0.32926	1	3700	3700		77.318	0	1	436050	+		54163	29582	44760	44796	59057	59057					0.0806943185162936
SLTRTRLKA	9	Unmodified	_SLTRTRLKA_					0	0	0			REV__ENSG00000184160|ENST00000330055|ADRA2C	REV__ENSG00000184160|ENST00000330055|ADRA2C	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.281494140625	2	523.327465	1044.64038	-0.46992	-0.00024592	-1.0701	-0.00055999	-1.54	-0.00080591	523.3275334494998	73.579	0.27754	73.579	73.359	73.636	0					9	6	2	0	0	0	0.027462	1	7222	7222		16.473	0	1	305520	+		54164	22406	44761	44797	59058	59058					0.11984229354129639
SLTRVATPPP	10	Unmodified	_SLTRVATPPP_					0	0	0			REV__nc|ENSG00000181085|Q8TD08-3|MAPK15	REV__nc|ENSG00000181085|Q8TD08-3|MAPK15	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.7750244140625	2	519.800749	1037.58694	1.0342	0.00053756	-1.6901	-0.00087854	-0.65598	-0.00034098	519.7992938745557	67.581	0.58832	64.09	63.938	64.526	-3.4902					24	11	3	0	0	0	0.027021	1	5019	5019		10.265	0	1	100810	+		54165	29035	44762	44798	59059	59059					0.06965431851608628
SLTSLHDKN	9	Unmodified	_SLTSLHDKN_					0	0	0		L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|21|1|sense	L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|21|1|sense	L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|21|1|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7624816894531	2	507.764363	1013.51417	-0.75433	-0.00038302	-1.6017	-0.00081327	-2.356	-0.0011963	507.7634972764376	115.15	1.4832	115.03	114.8	116.28	-0.11777					77	29	3	0	0	0	0.44568	1	10961	10961		47.657	5.2612	1	179880			54166	14544	44763	44799	59060	59060					0.007956780581821477
SLTSPAISPD	10	Unmodified	_SLTSPAISPD_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.317626953125	2	494.253297	986.492041	-0.0017665	-8.7309E-07	-0.34801	-0.00017201	-0.34978	-0.00017288	494.25312911031665	105.52	0.95149	103.5	103.1	104.05	-2.0161					35	18	3	0	0	0	0.027255	1	9579	9579		87.754	31.033	1	73653			54167	7923	44764	44800	59061	59061					-0.0017454641023277873
SLTSWAAPW	9	Unmodified	_SLTSWAAPW_					0	0	0		ENST00000572275.1_1_17:7826422-7827118:-|nuORF	ENST00000572275.1_1_17:7826422-7827118:-|nuORF	ENST00000572275.1_1_17:7826422-7827118:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.3002014160156	2	509.753267	1017.49198	-0.66121	-0.00033706	-2.632	-0.0013417	-3.2932	-0.0016787	509.7520221824771	25.868	0.19898	25.868	25.793	25.992	0					6	3	2	0	0	0	0.027462	1	622	622		26.796	0	1	8463.9			54168	13911	44765	44801	59062	59062					-0.016065016195852877
SLTYFRPK	8	Unmodified	_SLTYFRPK_					0	0	0		ENSG00000170790|ENST00000641461|OR10A2	ENSG00000170790|ENST00000641461|OR10A2	ENSG00000170790|ENST00000641461|OR10A2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.841064453125	2	506.284734	1010.55492	0.22312	0.00011296	-0.40466	-0.00020488	-0.18154	-9.1911E-05	506.2841430321115	111.22	0.73685	109.62	109.33	110.07	-1.6011					25	13	2	0	0	0	0.028476	1	10239	10239		38.806	0	1	34479			54169	7136	44766	44802	59063	59063					0.05006064168469493
SLVAKEIPTNK	11	Unmodified	_SLVAKEIPTNK_					0	0	0		MAN1A2-TTF2|1|fusion;ENSG00000116830|ENST00000369466|TTF2;MAN1A2-TTF2|2|fusion	MAN1A2-TTF2|1|fusion	MAN1A2-TTF2|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep3	3	600.3153076171875	2	600.353345	1198.69214	1.0976	0.00065893	-2.3778	-0.0014275	-1.2803	-0.00076862	600.3520794578067	100.76	0.45203	99.155	98.994	99.446	-1.6053					11	8	2	0	0	0	0.025612	1	6882	6882		51.528	27.009	1	20712			54170	3212	44767	44803	59064	59064					0.10073928257361331
SLVCLLPEV	9	Unmodified	_SLVCLLPEV_					0	0	0			REV__ENST00000359741.9_3_8:22277800-22277914:+|nuORF	REV__ENST00000359741.9_3_8:22277800-22277914:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	486.7779235839844	2	486.775354	971.536154	-0.71292	-0.00034703	3.9973	0.0019458	3.2844	0.0015987	486.77729091374255	64.353	1.0615	64.353	64.011	65.072	0					73	25	4	0	0	0	0.048552	2	5842	5842;5872		119.56	21.149	1	25831000	+		54171	24817	44768	44804	59065;59066	59065					0.049247664824065396
SLVDKKDL	8	Unmodified	_SLVDKKDL_					0	0	0		tr|A0A7D7A136|A0A7D7A136_9CLOT4-hydroxybutyrate--acetyl-CoACoAtransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12420PE=3SV=1	tr|A0A7D7A136|A0A7D7A136_9CLOT4-hydroxybutyrate--acetyl-CoACoAtransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12420PE=3SV=1	tr|A0A7D7A136|A0A7D7A136_9CLOT4-hydroxybutyrate--acetyl-CoACoAtransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12420PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	459.2464904785156	2	459.26875	916.522947	0.015538	7.136E-06	0.22575	0.00010368	0.24129	0.00011082	459.2685962259502	61.262	1.1504	57.832	57.544	58.694	-3.43					38	23	2	0	0	0	0.028476	1	4280	4280		27.882	12.24	1	250150			54172	36024	44769	44805	59067	59067					0.061346516946514384
SLVDQKLEL	9	Unmodified	_SLVDQKLEL_					0	0	0		ENSG00000155252|ENST00000370631|PI4K2A	ENSG00000155252|ENST00000370631|PI4K2A	ENSG00000155252|ENST00000370631|PI4K2A	MULTI-MSMS	OvCa9_classI_Rep3	3	522.8017578125	2	522.800414	1043.58628	-0.78114	-0.00040838	0.97045	0.00050735	0.1893	9.8967E-05	522.8007535698202	102.18	1.6733	100.66	100.27	101.94	-1.5211					69	31	4	0	0	0	0.16562	1	7015	7015		82.241	4.9229	1	499170			54173	5774	44770	44806	59068	59068					0.06622592411895312
SLVEEFRA	8	Unmodified	_SLVEEFRA_					0	0	0			REV__nc|ENSG00000136830|Q96TA1-2|NIBAN2	REV__nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-MSMS	OvCa99_classI_Rep5	1	475.7518310546875	2	475.750724	949.486896	2.6698	0.0012702	-0.21523	-0.0001024	2.4546	0.0011678	475.75048803669534	75.777	0.67451	75.777	75.563	76.238	0					44	16	4	0	0	0	0.34187	1	7555	7555		99.375	0	1	3443100	+		54174	19410	44771	44807	59069	59069					0.010131945178045498
SLVEEFRA	8	Unmodified	_SLVEEFRA_					0	0	0			REV__nc|ENSG00000136830|Q96TA1-2|NIBAN2	REV__nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	475.750724	949.486896	2.6698	0.0012702	-0.21523	-0.0001024	2.4546	0.0011678	475.75048803669534	75.777	0.67451	75.777	75.563	76.238	0	0.10891	-3.7195E-05	NaN	99.375	44	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3443100	+		54175	19410	44771	44807							0.010131945178045498
SLVEEFRA	8	Unmodified	_SLVEEFRA_					0	0	0			REV__nc|ENSG00000136830|Q96TA1-2|NIBAN2	REV__nc|ENSG00000136830|Q96TA1-2|NIBAN2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	475.750724	949.486896	0.5071	0.00024125	-0.023999	-1.1417E-05	0.4831	0.00022983	475.7505982806446	78.376	1.0945	75.559	75.067	76.162	-2.8165	-0.10891	0.00014476	NaN	99.375	46	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175610	+		54176	19410	44771	44807							0.010131945178045498
SLVEIILHV	9	Unmodified	_SLVEIILHV_					0	0	0		PSMD13|p.L315Pfs*59|1|0.26|ENSG00000185627|chr11:251842-251843|-/T|frameshift_variant;ENSG00000185627|ENST00000532097|PSMD13;nc|ENSG00000185627|Q9UNM6-2|PSMD13;ENST00000534590.5_1_11:244044-244236:+|nuORF;ENST00000527047.5_1_11:237024-247462:+|nuORF	PSMD13|p.L315Pfs*59|1|0.26|ENSG00000185627|chr11:251842-251843|-/T|frameshift_variant	PSMD13|p.L315Pfs*59|1|0.26|ENSG00000185627|chr11:251842-251843|-/T|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	511.8174743652344	2	511.815867	1021.61718	1.2211	0.00062499	0.48111	0.00024624	1.7022	0.00087123	511.8160681947702	145.5	2.3209	145.5	145.13	147.45	0					137	47	4	0	0	0	0.013398	5	17017	16995;17017;17041;17065;17114		157.99	72.63	1	2939900			54177	8270	44772	44808	59070;59071;59072;59073;59074	59071					0.10723790516817644
SLVEKLKPQ	9	Unmodified	_SLVEKLKPQ_					0	0	0		nc|ENSG00000133958|Q9P2D8-2|UNC79;nc|ENSG00000133958|Q9P2D8|UNC79;nc|ENSG00000133958|Q9P2D8-3|UNC79;ENSG00000133958|ENST00000695012|UNC79	nc|ENSG00000133958|Q9P2D8-2|UNC79	nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-MSMS	OvCa99_classI_Rep5	1	521.3169555664062	2	521.318774	1040.623	-0.42373	-0.0002209	2.6019	0.0013564	2.1782	0.0011355	521.3198897583303	101.69	0.89288	101.69	101.27	102.17	0					41	20	3	0	0	0	0.48324	1	11322	11322		44.117	0	1	429630			54178	4243	44773	44809	59075	59075					0.10430889028452839
SLVEKLLE	8	Unmodified	_SLVEKLLE_					0	0	0		ENSG00000106013|ENST00000265224|ANKRD7;nc|ENSG00000106013|Q92527-2|ANKRD7	ENSG00000106013|ENST00000265224|ANKRD7	ENSG00000106013|ENST00000265224|ANKRD7	MULTI-MSMS	OvCa9_classI_Rep3	3	465.77813720703125	2	465.778951	929.543348	0.46452	0.00021637	-3.4338	-0.0015994	-2.9693	-0.001383	465.77725540268585	129.01	4.2949	127.92	126.97	131.27	-1.0933					136	86	2	0	0	0	0.74229	1	10436	10436		30.504	0	1	27077			54179	2523	44774	44810	59076	59076					0.07575822354465345
SLVELFFA	8	Unmodified	_SLVELFFA_					0	0	0			REV__tr|A0A7D6VMY7|A0A7D6VMY7_9CLOTNa/PicotransporterfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16730PE=4SV=1	REV__tr|A0A7D6VMY7|A0A7D6VMY7_9CLOTNa/PicotransporterfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16730PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	463.2539367675781	2	463.255111	924.49567	-0.17897	-8.291E-05	-4.1781	-0.0019355	-4.357	-0.0020184	463.25300736810107	56.36	0.77727	56.36	56.011	56.788	0					25	18	2	0	0	0	0.65582	1	4669	4669		52.299	0.96372	1	1361900	+		54180	31152	44775	44811	59077	59077					0.030401681542798542
SLVELGALK	9	Unmodified	_SLVELGALK_					0	0	0			REV__nc|ENSG00000196116|Q8NHU6-2|TDRD7	REV__nc|ENSG00000196116|Q8NHU6-2|TDRD7	MULTI-MSMS	OvCa9_classI_Rep3	3	465.2857666015625	2	465.286943	928.559333	1.3406	0.00062376	-2.0993	-0.00097679	-0.75874	-0.00035303	465.28596646402366	125.96	2.9835	124.9	124.53	127.51	-1.0519					156	57	5	0	0	0	0.28934	1	9907	9907		64.207	5.9773	1	4345900	+		54181	22784	44776	44812	59078	59078					0.09219528591381732
SLVFHSTSM	9	Unmodified	_SLVFHSTSM_					0	0	0		nc|ENSG00000204634|O95759-2|TBC1D8;nc|ENSG00000204634|O95759|TBC1D8;ENSG00000204634|ENST00000409318|TBC1D8	nc|ENSG00000204634|O95759-2|TBC1D8	nc|ENSG00000204634|O95759-2|TBC1D8	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.2325744628906	2	504.744585	1007.47462	-0.57217	-0.0002888	4.0419	0.0020401	3.4697	0.0017513	504.7464730188463	39.442	0.38767	39.442	39.242	39.63	0					17	8	3	0	0	0	0.027462	1	2299	2299		16.473	3.514	1	510340			54182	9015	44777	44813	59079	59079					-0.028821652168858236
SLVFPPKKP	9	Unmodified	_SLVFPPKKP_					0	0	0		ENSG00000008226|ENST00000308059|DLEC1;nc|ENSG00000008226|Q9Y238-3|DLEC1;DLEC1|p.L477Qfs*66|1|0.24|ENSG00000008226|chr3:38085440-38085441|-/CAGCCTGCTCCCCTCGCATGCCCTTTTC|frameshift_variant;ENST00000440294.6_1_3:38080716-38136583:+|nuORF;nc|ENSG00000008226|Q9Y238-2|DLEC1	ENSG00000008226|ENST00000308059|DLEC1	ENSG00000008226|ENST00000308059|DLEC1	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.81500244140625	2	506.813128	1011.6117	-0.49324	-0.00024998	-2.873	-0.0014561	-3.3663	-0.0017061	506.8119025808237	108.49	1.6572	107.29	106.43	108.09	-1.1978					52	31	2	0	0	0	0.027462	1	7748	7748		34.173	7.4796	1	132060			54183	914	44778	44814	59080	59080					0.1063611172498895
SLVFSVFAIVI	11	Unmodified	_SLVFSVFAIVI_					0	0	0		nc|ENSG00000114988|Q9H0V9-3|LMAN2L;MECOM-LMAN2L|2|fusion;MECOM-LMAN2L|1|fusion;ENSG00000114988|ENST00000264963|LMAN2L;nc|ENSG00000114988|Q9H0V9-2|LMAN2L	nc|ENSG00000114988|Q9H0V9-3|LMAN2L	nc|ENSG00000114988|Q9H0V9-3|LMAN2L	MULTI-MSMS	OvCa9_classI_Rep2	2	597.856689453125	2	597.860275	1193.706	-3.1765	-0.0018991	-3.3266	-0.0019889	-6.5032	-0.003888	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.70865	1	15020	15020		26.693	3.6504	1	436470			54184	3054	44779	44815	59081	59081					0.11689205756465526
SLVFSVFAIVI	11	Unmodified	_SLVFSVFAIVI_					0	0	0		nc|ENSG00000114988|Q9H0V9-3|LMAN2L;MECOM-LMAN2L|2|fusion;MECOM-LMAN2L|1|fusion;ENSG00000114988|ENST00000264963|LMAN2L;nc|ENSG00000114988|Q9H0V9-2|LMAN2L	nc|ENSG00000114988|Q9H0V9-3|LMAN2L	nc|ENSG00000114988|Q9H0V9-3|LMAN2L	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8568115234375	2	597.860275	1193.706	-2.7036	-0.0016164	-3.9017	-0.0023327	-6.6053	-0.0039491	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.65947	1	12527	12527		39.253	0	1	591030			54185	3054	44779	44815	59082	59082					0.11689205756465526
SLVGHQTK	8	Unmodified	_SLVGHQTK_					0	0	0			REV__ENST00000487411.5_1_16:31045754-31051121:+|nuORF	REV__ENST00000487411.5_1_16:31045754-31051121:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	435.75701904296875	2	435.245609	868.476666	0.088039	3.8319E-05	0.12218	5.3177E-05	0.21022	9.1496E-05	435.24578411659	62.903	0.87043	59.445	59.111	59.981	-3.4577					31	17	3	0	0	0	0.028476	1	4373	4373		26.796	7.4361	1	61925	+		54186	17621	44780	44816	59083	59083					0.037166315832337204
SLVGRLSEL	9	Unmodified	_SLVGRLSEL_					0	0	0			REV__nc|ENSG00000184060|Q9NPF8-2|ADAP2	REV__nc|ENSG00000184060|Q9NPF8-2|ADAP2	MULTI-MSMS	OvCa9_classI_Rep2	2	487.2867126464844	2	487.287474	972.560395	-0.58577	-0.00028544	-0.5191	-0.00025295	-1.1049	-0.00053839	487.2873954078766	48.511	1.8372	45.75	45.428	47.266	-2.7603					98	36	4	0	0	0	0.14998	1	3046	3046		84.916	0	1	1108600	+		54187	22402	44781	44817	59084	59084					0.0730174296027144
SLVIGWALVI	10	Unmodified	_SLVIGWALVI_					0	0	0			REV__tr|A0A7D6VTF9|A0A7D6VTF9_9CLOTEamAfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_08830PE=3SV=1	REV__tr|A0A7D6VTF9|A0A7D6VTF9_9CLOTEamAfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_08830PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	535.832763671875	2	535.83406	1069.65357	0.48814	0.00026156	-4.0367	-0.002163	-3.5486	-0.0019014	535.8314796413584	117.89	0.9911	116.86	116.54	117.53	-1.0324					60	19	5	0	0	0	0.58282	1	8864	8864		44.117	5.3632	1	128600	+		54188	31601	44782	44818	59085	59085					0.12152667413511153
SLVKTAEL	8	Unmodified	_SLVKTAEL_					0	0	0		ENSG00000166391|ENST00000198801|MOGAT2;nc|ENSG00000166391|Q3SYC2-3|MOGAT2;nc|ENSG00000166391|Q3SYC2-2|MOGAT2	ENSG00000166391|ENST00000198801|MOGAT2	ENSG00000166391|ENST00000198801|MOGAT2	MULTI-MSMS	OvCa9_classI_Rep2	2	430.7579040527344	2	430.758018	859.501483	-0.070518	-3.0376E-05	-0.0041195	-1.7745E-06	-0.074638	-3.2151E-05	430.7579527292077	70.798	3.4249	68.227	67.563	70.988	-2.5707					181	65	5	0	0	0	0.36941	4	5651	5651;5657;5686;5694		94.006	0	1	1316200			54189	6672	44783	44819	59086;59087;59088;59089	59086					0.06611266665947824
SLVKTAEL	8	Unmodified	_SLVKTAEL_					0	0	0		ENSG00000166391|ENST00000198801|MOGAT2;nc|ENSG00000166391|Q3SYC2-3|MOGAT2;nc|ENSG00000166391|Q3SYC2-2|MOGAT2	ENSG00000166391|ENST00000198801|MOGAT2	ENSG00000166391|ENST00000198801|MOGAT2	MULTI-MSMS	OvCa9_classI_Rep4_	4	430.75946044921875	2	430.758018	859.501483	-0.18881	-8.133E-05	-0.13604	-5.8602E-05	-0.32485	-0.00013993	430.75794506933937	71.75	3.1403	68.293	67.874	71.015	-3.4563					177	64	5	0	0	0	0.36941	2	5469	5469;5517		94.006	8.4716	1	4667500			54190	6672	44783	44819	59090;59091	59090					0.06611266665947824
SLVKVVTLW	9	Unmodified	_SLVKVVTLW_					0	0	0		nc|ENSG00000170312|P06493-2|CDK1;chr10:60785787-60791890|413|13.74|0.51|4.76|+|ENST00000373809|CDK1,CDK1	nc|ENSG00000170312|P06493-2|CDK1	nc|ENSG00000170312|P06493-2|CDK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.8252563476562	2	522.826235	1043.63792	-1.2156	-0.00063554	-3.1403	-0.0016418	-4.3559	-0.0022774	522.824557169564	81.502	1.6045	78.791	78.199	79.804	-2.7106					115	32	5	0	0	0	0.33652	1	6761	6761		58.782	4.0056	1	2410100			54191	279	44784	44820	59092	59092					0.11784380896460789
SLVLLPTAGL	10	Unmodified	_SLVLLPTAGL_					0	0	0		ENST00000469444.6_1_2:172949561-172951418:+|nuORF	ENST00000469444.6_1_2:172949561-172951418:+|nuORF	ENST00000469444.6_1_2:172949561-172951418:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.3100280761719	2	492.310418	982.606283	-0.222	-0.00010929	0.62775	0.00030905	0.40575	0.00019975	492.31029247924175	103.97	2.5731	101.85	101.07	103.64	-2.1192					124	49	5	0	0	0	0.46756	1	9388	9388		58.782	0	1	611980			54192	12345	44785	44821	59093	59093					0.11428388142508084
SLVLLVQEAL	10	Unmodified	_SLVLLVQEAL_					0	0	0		chr7:94415270-94427188|100|75.89|0.11|9.5|+|1|COL1A2,COL1A2|1	chr7:94415270-94427188|100|75.89|0.11|9.5|+|1|COL1A2,COL1A2|1	chr7:94415270-94427188|100|75.89|0.11|9.5|+|1|COL1A2,COL1A2|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8327026367188	2	542.834257	1083.65396	2.2539	0.0012235	-0.034201	-1.8565E-05	2.2197	0.0012049	542.8341126361333	116.39	0.6346	116.39	116.05	116.68	0					29	13	3	0	0	0	0.026871	1	13353	13353		15.642	0.77694	1	465580			54193	534	44786	44822	59094	59094					0.11548042342701592
SLVLLVQEAL	10	Unmodified	_SLVLLVQEAL_					0	0	0		chr7:94415270-94427188|100|75.89|0.11|9.5|+|1|COL1A2,COL1A2|1	chr7:94415270-94427188|100|75.89|0.11|9.5|+|1|COL1A2,COL1A2|1	chr7:94415270-94427188|100|75.89|0.11|9.5|+|1|COL1A2,COL1A2|1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.834257	1083.65396	-1.4801	-0.00080347	-0.37085	-0.00020131	-1.851	-0.0010048	542.8337406613429	116.73	0.98887	116.6	116.32	117.31	-0.12869	0.036116	-8.9622E-05	NaN	10.265	33	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82057			54194	534	44786	44822							0.11548042342701592
SLVLLVQEAL	10	Unmodified	_SLVLLVQEAL_					0	0	0		chr7:94415270-94427188|100|75.89|0.11|9.5|+|1|COL1A2,COL1A2|1	chr7:94415270-94427188|100|75.89|0.11|9.5|+|1|COL1A2,COL1A2|1	chr7:94415270-94427188|100|75.89|0.11|9.5|+|1|COL1A2,COL1A2|1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	542.834257	1083.65396	-0.42238	-0.00022928	-3.2757	-0.0017782	-3.6981	-0.0020074	542.8320841951557	117.74	1.2391	116.71	116.24	117.48	-1.0324	0.14512	-0.0032433	NaN	10.265	43	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85339			54195	534	44786	44822							0.11548042342701592
SLVLTRKF	8	Unmodified	_SLVLTRKF_					0	0	0			REV__ENST00000531733.1_1_8:11666026-11667401:+|nuORF	REV__ENST00000531733.1_1_8:11666026-11667401:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.3009338378906	2	482.302927	962.591301	0.49379	0.00023815	-3.8853	-0.0018739	-3.3915	-0.0016357	482.3009570429579	31.881	1.163	29.186	28.84	30.003	-2.6954					55	37	2	0	0	0	0.75723	1	728	728		23.042	0	1	14793	+		54196	27220	44787	44823	59095	59095					0.10850941065177722
SLVNDTVKTPD	11	Unmodified	_SLVNDTVKTPD_					0	0	0		MUC15|p.S197Rfs*19|1|0.05|ENSG00000169550|chr11:26565268-26565269|-/TT|frameshift_variant;MUC15|p.S197Lfs*27|1|0.04|ENSG00000169550|chr11:26565270-26565271|-/TGGAGGAAAACAA|frameshift_variant;nc|ENSG00000169550|Q8N387-2|MUC15;nc|ENSG00000169550|Q8N387|MUC15;ENSG00000169550|ENST00000529533|MUC15	MUC15|p.S197Rfs*19|1|0.05|ENSG00000169550|chr11:26565268-26565269|-/TT|frameshift_variant	MUC15|p.S197Rfs*19|1|0.05|ENSG00000169550|chr11:26565268-26565269|-/TT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.2523193359375	2	594.808968	1187.60338	2.0077	0.0011942	-0.22778	-0.00013549	1.78	0.0010587	595.3098441569589	117.44	0.5192	117.44	117.18	117.7	0					17	10	2	0	0	0	0.025466	1	13473	13473		40.058	1.3046	1	142740			54197	7016	44788	44824	59096	59096					0.017084682270251506
SLVNIVQHI	9	Unmodified	_SLVNIVQHI_					0	0	0		TOPORS|p.S774Rfs*14|1|0.06|ENSG00000197579|chr9:32542203-32542203|A/-|frameshift_variant;nc|ENSG00000197579|Q9NS56-2|TOPORS;ENSG00000197579|ENST00000360538|TOPORS	TOPORS|p.S774Rfs*14|1|0.06|ENSG00000197579|chr9:32542203-32542203|A/-|frameshift_variant;nc|ENSG00000197579|Q9NS56-2|TOPORS	TOPORS|p.S774Rfs*14|1|0.06|ENSG00000197579|chr9:32542203-32542203|A/-|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	511.8038024902344	2	511.803291	1021.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.52	1	109.52	109.02	110.02	0								0	0	0	0.13464	1	12410	12410		66.429	16.988	1				54198	32975;8725	44789	44825	59097	59097					0.08209735714228827
SLVPMEHCIT	10	Unmodified	_SLVPMEHCIT_					0	0	0		nc|ENSG00000152583|Q14515-2|SPARCL1;ENSG00000152583|ENST00000282470|SPARCL1	nc|ENSG00000152583|Q14515-2|SPARCL1	nc|ENSG00000152583|Q14515-2|SPARCL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.3259887695312	2	565.272652	1128.53075	0.75124	0.00042465	0.87754	0.00049605	1.6288	0.0009207	565.2730133834401	103.26	0.781	101.06	100.62	101.4	-2.1994					20	14	2	0	0	0	0.02661	1	9354	9354		32.812	0	1	44118			54199	5633	44790	44826	59098	59098					-0.02837280371727502
SLVPPPSLL	9	Unmodified	_SLVPPPSLL_					0	0	0			REV__ENST00000496332.5_1_1:155170600-155172038:-|nuORF	REV__ENST00000496332.5_1_1:155170600-155172038:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.2882995605469	2	461.784036	921.553519	-0.21923	-0.00010124	0.14774	6.8226E-05	-0.071488	-3.3012E-05	461.78396523513635	98.046	1.115	95.667	95.368	96.483	-2.3786					36	21	2	0	0	0	0.027441	1	8798	8798		45.952	22.909	1	388230	+		54200	26757	44791	44827	59099	59099					0.08960430079707749
SLVPPPSLL	9	Unmodified	_SLVPPPSLL_					0	0	0			REV__ENST00000496332.5_1_1:155170600-155172038:-|nuORF	REV__ENST00000496332.5_1_1:155170600-155172038:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	461.784036	921.553519	-0.6297	-0.00029079	0.81235	0.00037513	0.18265	8.4344E-05	461.78422811708947	97.405	1.1059	95.646	95.311	96.417	-1.7595	0.0068463	0.00037451	NaN	45.952	35	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	442580	+		54201	26757	44791	44827							0.08960430079707749
SLVQPSLSMTP	11	Unmodified	_SLVQPSLSMTP_					0	0	0		ENSG00000213079|ENST00000367178|SCAF8;nc|ENSG00000213079|Q9UPN6-2|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	ENSG00000213079|ENST00000367178|SCAF8	MULTI-MSMS	OvCa9_classI_Rep2	2	580.3026123046875	2	580.305007	1158.59546	-1.4545	-0.00084403	-1.4155	-0.00082142	-2.8699	-0.0016654	580.3040479313358	63.681	2.5997	60.937	60.374	62.973	-2.7444					149	49	6	0	0	0	0.17933	1	4827	4827		82.75	13.964	1	676090			54202	9116	44792	44828	59100	59100					0.022506177059312904
SLVQTLVKN	9	Unmodified	_SLVQTLVKN_					0	0	0		nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;ENST00000584336.1_1_17:37686825-37687566:+|nuORF	nc|ENSG00000167258|Q9NYV4-2|CDK12	nc|ENSG00000167258|Q9NYV4-2|CDK12	MULTI-MSMS	OvCa99_classI_Rep5	1	501.3066711425781	2	501.303124	1000.5917	2.7527	0.0013799	3.8704	0.0019403	6.6231	0.0033202	501.3049841859924	99.002	0.88823	99.002	98.764	99.652	0					38	21	2	0	0	0	0.17606	1	10961	10961		80.455	11.668	1	8944400			54203	6776	44793	44829	59101	59101					0.09142315994381534
SLVREINE	8	Unmodified	_SLVREINE_					0	0	0			REV__nc|ENSG00000164066|Q9ULD6-4|INTU	REV__nc|ENSG00000164066|Q9ULD6-4|INTU	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.7489318847656	2	480.261456	958.50836	2.2674	0.001089	0.83238	0.00039976	3.0998	0.0014887	480.26195783643885	77.107	0.53724	77.107	76.799	77.336	0					22	12	3	0	0	0	0.028476	1	7734	7734		16.473	0	1	681470	+		54204	20932	44794	44830	59102	59102					0.027445795465155243
SLVRFLWKWKL	11	Unmodified	_SLVRFLWKWKL_					0	0	0			REV__ENST00000323224.7_1_18:672908-673115:+|nuORF	REV__ENST00000323224.7_1_18:672908-673115:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	492.9688415527344	3	492.634368	1474.88128	-4.4124	-0.0021737	4.4162	0.0021756	0.0038735	1.9082E-06	492.6364518280441	160.52	2.4825	160.29	159.35	161.83	-0.22697					136	50	4	0	0	0	0.72507	1	16415	16415		14.694	5.0475	1	91160	+		54205	24463	44795	44831	59103	59103					0.1628304534133349
SLVRLLLLV	9	Unmodified	_SLVRLLLLV_					0	0	0		RNASE1|p.S50Kfs*7|1|0.04|ENSG00000129538|chr14:20801920-20801921|-/CGTT|frameshift_variant;ENSG00000129538|ENST00000397967|RNASE1	RNASE1|p.S50Kfs*7|1|0.04|ENSG00000129538|chr14:20801920-20801921|-/CGTT|frameshift_variant	RNASE1|p.S50Kfs*7|1|0.04|ENSG00000129538|chr14:20801920-20801921|-/CGTT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	513.3587646484375	2	513.357702	1024.70085	0.77329	0.00039697	0.91426	0.00046934	1.6875	0.00086632	513.3580192906047	152.93	1.5038	152.93	152.62	154.12	0					70	31	3	0	0	0	0.51865	1	17902	17902		40.778	5.1599	1	214180			54206	3934	44796	44832	59104	59104					0.18948946684508883
SLVRLPLSP	9	Unmodified	_SLVRLPLSP_					0	0	0			REV__ENST00000470671.1_1_X:71475533-71493153:-|nuORF	REV__ENST00000470671.1_1_X:71475533-71493153:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	491.7875061035156	2	491.30821	980.601866	-0.34481	-0.00016941	-0.0056444	-2.7732E-06	-0.35045	-0.00017218	491.30802005050333	73.063	1.2393	70.576	70.183	71.422	-2.4873					35	24	2	0	0	0	0.027447	1	3613	3613		39.253	10.103	1	39377	+		54207	26266	44797	44833	59105	59105					0.11078923719617251
SLVRLPLSP	9	Unmodified	_SLVRLPLSP_					0	0	0			REV__ENST00000470671.1_1_X:71475533-71493153:-|nuORF	REV__ENST00000470671.1_1_X:71475533-71493153:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	491.30821	980.601866	0.49005	0.00024077	-0.43733	-0.00021486	0.052726	2.5905E-05	491.30779733031557	72.981	1.308	70.581	70.325	71.633	-2.3999	0.0027645	-0.00021359	NaN	39.253	45	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26412	+		54208	26266	44797	44833							0.11078923719617251
SLVSKLRVF	9	Unmodified	_SLVSKLRVF_					0	0	0			REV__L1PREC2_dup1338|chr3:98831351-98834041:-|1.380298648680358|0.2119742938869221|2.7|429.0|143|3|anti-sense	REV__L1PREC2_dup1338|chr3:98831351-98834041:-|1.380298648680358|0.2119742938869221|2.7|429.0|143|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.826904296875	2	524.829309	1047.64407	-5.767	-0.0030267	1.6173	0.0008488	-4.1497	-0.0021779	524.8300427930473	156.94	1.6972	155.39	155.01	156.7	-1.545					136	47	6	0	0	0	0.68424	1	15541	15541		21.96	3.6355	1	1010500	+		54209	28607	44798	44834	59106	59106					0.12214899127980061
SLVSLAVTA	9	Unmodified	_SLVSLAVTA_					0	0	0			REV__sp|P69336|US19_HCMVATransmembraneproteinHWLF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US19PE=2SV=1	REV__sp|P69336|US19_HCMVATransmembraneproteinHWLF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US19PE=2SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	431.24468994140625	2	430.758018	859.501483	0.79216	0.00034123	-1.1283	-0.00048602	-0.33613	-0.00014479	430.7574553184621	76.103	1.7687	73.165	72.352	74.121	-2.9389					61	36	3	0	0	0	0.027441	1	6015	6015		65.803	0	1	98493	+		54210	29389	44799	44835	59107	59107					0.06611266665936455
SLVSLAVTA	9	Unmodified	_SLVSLAVTA_					0	0	0			REV__sp|P69336|US19_HCMVATransmembraneproteinHWLF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US19PE=2SV=1	REV__sp|P69336|US19_HCMVATransmembraneproteinHWLF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US19PE=2SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	430.758018	859.501483	-0.96328	-0.00041494	0.66697	0.0002873	-0.29631	-0.00012764	430.7581170313757	75.081	2.2868	73.109	71.798	74.085	-1.9711	-0.027549	0.0012891	NaN	55.504	65	43	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45595	+		54211	29389	44799	44835							0.06611266665936455
SLVSLSLTSH	10	Unmodified	_SLVSLSLTSH_					0	0	0		ENST00000463824.1_1_2:203748330-203749074:-|nuORF;ENSG00000138442|ENST00000261015|WDR12	ENST00000463824.1_1_2:203748330-203749074:-|nuORF	ENST00000463824.1_1_2:203748330-203749074:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8192138671875	2	522.290214	1042.56587	2.1342	0.0011147	1.3751	0.00071818	3.5093	0.0018329	522.2906936076976	86.696	0.7833	86.696	86.271	87.054	0					28	18	3	0	0	0	0.026582	1	9122	9122		51.335	3.3759	1	525180			54212	4688	44800	44836	59108	59108					0.04629421752088092
SLVSLSLTSH	10	Unmodified	_SLVSLSLTSH_					0	0	0		ENST00000463824.1_1_2:203748330-203749074:-|nuORF;ENSG00000138442|ENST00000261015|WDR12	ENST00000463824.1_1_2:203748330-203749074:-|nuORF	ENST00000463824.1_1_2:203748330-203749074:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	522.290214	1042.56587	-0.5046	-0.00026355	-3.2263	-0.0016851	-3.7309	-0.0019486	522.2899312973605	88.551	0.50148	86.42	86.009	86.51	-2.1309	-0.099782	-0.0036421	NaN	51.335	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15526			54213	4688	44800	44836							0.04629421752088092
SLVSLSLTSH	10	Unmodified	_SLVSLSLTSH_					0	0	0		ENST00000463824.1_1_2:203748330-203749074:-|nuORF;ENSG00000138442|ENST00000261015|WDR12	ENST00000463824.1_1_2:203748330-203749074:-|nuORF	ENST00000463824.1_1_2:203748330-203749074:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	522.290214	1042.56587	-1.5363	-0.00080239	-1.5212	-0.00079453	-3.0575	-0.0015969	522.2905966145381	89.046	0.69492	86.443	85.933	86.628	-2.6027	-0.076507	-0.001861	NaN	51.335	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24126			54214	4688	44800	44836							0.04629421752088092
SLVSPLSPR	9	Unmodified	_SLVSPLSPR_					0	0	0		nc|ENSG00000100918|O95072-2|REC8;ENSG00000100918|ENST00000611366|REC8	nc|ENSG00000100918|O95072-2|REC8	nc|ENSG00000100918|O95072-2|REC8	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.28363037109375	2	478.282192	954.549831	-0.56924	-0.00027226	-0.043113	-2.062E-05	-0.61235	-0.00029288	478.28201347911636	81.894	0.91716	79.211	78.865	79.782	-2.6829					49	18	3	0	0	0	0.14855	1	6737	6737		85.161	2.9203	1	703140			54215	2122	44801	44837	59109	59109					0.0707376030584328
SLVSQNQLAGR	11	Unmodified	_SLVSQNQLAGR_					0	0	0			REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1	REV__nc|ENSG00000158816|Q5TIE3-4|VWA5B1	MULTI-SECPEP	OvCa9_classI_Rep3	3	587.81494140625	2	586.822744	1171.63093	-1.7025	-0.00099907	3.9065	0.0022924	2.204	0.0012933	586.8247942391511	98.926	1.8576	97.241	96.44	98.297	-1.685					88	35	4	0	0	0	0.025759	1	6678	6678		35.152	17.684	1	131810	+		54216	28954	44802	44838	59110	59110					0.05198416277949036
SLVVSHIINL	10	Unmodified	_SLVVSHIINL_					0	0	0			REV__nc|ENSG00000143952|Q9P1Q0-4|VPS54;REV__nc|ENSG00000143952|Q9P1Q0-3|VPS54	REV__nc|ENSG00000143952|Q9P1Q0-4|VPS54	MULTI-MSMS	OvCa9_classI_Rep3	3	547.825927734375	2	547.832049	1093.64954	-6.0457	-0.003312	-4.2018	-0.0023019	-10.248	-0.0056139	547.8295905768617	154.78	1.79	153.77	152.92	154.71	-1.0076					93	40	3	0	0	0	0.71192	1	13347	13347		29.15	0	1	69775	+		54217	19878;28903	44803	44839	59111	59111					0.10646577919806077
SLVVVRQPDA	10	Unmodified	_SLVVVRQPDA_					0	0	0			REV__tr|A0A553SHU3|A0A553SHU3_NIACIIron-hydroxamateABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13665PE=3SV=1	REV__tr|A0A553SHU3|A0A553SHU3_NIACIIron-hydroxamateABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13665PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.7838134765625	2	542.31148	1082.60841	1.1948	0.00064795	-3.1224	-0.0016933	-1.9276	-0.0010454	542.3107708723521	89.229	1.4349	87.861	87.329	88.764	-1.3676					61	28	3	0	0	0	0.026782	1	7954	7954		45.972	14.442	1	141130	+		54218	29840	44804	44840	59112	59112					0.07040816880339662
SLWALLVGL	9	Unmodified	_SLWALLVGL_					0	0	0			REV__ENST00000569516.5_1_16:904534-921479:-|nuORF	REV__ENST00000569516.5_1_16:904534-921479:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	486.2978820800781	2	486.299853	970.585153	0.57512	0.00027968	-2.988	-0.0014531	-2.4129	-0.0011734	486.29828272663417	114.86	0.60464	114.86	114.6	115.21	0					21	12	2	0	0	0	0.25214	1	13120	13120		68.485	7.5128	1	179550	+		54219	17606	44805	44841	59113	59113					0.09868422833676505
SLWHPWPTWRT	11	Unmodified	_SLWHPWPTWRT_					0	0	0			REV__chr17:50187537-50190001|110|466.46|0.03|14.0|-|2|COL1A1,COL1A1|1	REV__chr17:50187537-50190001|110|466.46|0.03|14.0|-|2|COL1A1,COL1A1|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.80908203125	3	489.582444	1465.7255	-0.07706	-3.7727E-05	1.6544	0.00080997	1.5773	0.00077224	489.58335809028324	64.635	0.41405	64.635	64.461	64.875	0					16	9	2	0	0	0	0.025864	1	5863	5863		42.338	26.417	1	297020	+		54220	15948	44806	44842	59114	59114					0.011269748199083551
SLWITLPLP	9	Unmodified	_SLWITLPLP_					0	0	0		ENST00000495363.5_1_21:35757936-35777047:+|nuORF	ENST00000495363.5_1_21:35757936-35777047:+|nuORF	ENST00000495363.5_1_21:35757936-35777047:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.2713623046875	2	520.312961	1038.61137	-1.3813	-0.00071869	-0.72146	-0.00037538	-2.1027	-0.0010941	520.3119332851544	106.93	1.6555	105.05	103.88	105.54	-1.8785					37	31	2	0	0	0	0.027462	1	9612	9612		29.15	0	1	41228			54221	12772	44807	44843	59115	59115					0.09360692005134297
SLWPLLSPL	9	Unmodified	_SLWPLLSPL_					0	0	0			REV__ENST00000342085.8_1_16:2651281-2651560:+|nuORF	REV__ENST00000342085.8_1_16:2651281-2651560:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	513.3021850585938	2	513.305136	1024.59572	-0.90798	-0.00046607	-3.6367	-0.0018667	-4.5446	-0.0023328	513.303241645798	102.61	2.5703	101.93	101.49	104.06	-0.68459					128	51	4	0	0	0	0.27546	1	9478	9478		65.803	3.6958	1	1179700	+		54222	24644	44808	44844	59116	59116					0.08440405488090619
SLWQEELKAI	10	Unmodified	_SLWQEELKAI_					0	0	0			REV__ENSG00000054654|ENST00000555002|SYNE2	REV__ENSG00000054654|ENST00000555002|SYNE2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	406.2334289550781	3	406.223923	1215.64994	1.362	0.00055328	-4.26	-0.0017305	-2.898	-0.0011772	406.55606836995116	57.787	0.45751	54.442	54.291	54.748	-3.3449					11	8	2	0	0	0	0.026968	1	3754	3754		29.17	13.833	1	16077	+		54223	16701	44809	44845	59117	59117					0.05073952848988483
SLWQEIPVV	9	Unmodified	_SLWQEIPVV_					0	0	0		nc|ENSG00000050327|Q12774-2|ARHGEF5;ENSG00000050327|ENST00000056217|ARHGEF5	nc|ENSG00000050327|Q12774-2|ARHGEF5	nc|ENSG00000050327|Q12774-2|ARHGEF5	MULTI-MSMS	OvCa99_classI_Rep5	1	535.7989501953125	2	535.797675	1069.5808	0.8576	0.0004595	1.2318	0.00066001	2.0894	0.0011195	535.7982007912447	152.96	1.1644	152.96	152.62	153.78	0					61	24	4	0	0	0	0.37135	1	17922	17922		54.776	5.3348	1	511780			54224	1177	44810	44846	59118	59118					0.04878913620086678
SLWSFNYFF	9	Unmodified	_SLWSFNYFF_					0	0	0		ENSG00000179632|ENST00000322428|MAF1	ENSG00000179632|ENST00000322428|MAF1	ENSG00000179632|ENST00000322428|MAF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	605.8250122070312	2	605.782025	1209.5495	1.0718	0.00064927	-1.534	-0.00092926	-0.46219	-0.00027998	605.7808878886676	90.981	0.20067	90.981	90.857	91.057	0					6	4	2	0	0	0	0.027462	1	9772	9772		38.806	10.725	1	77108			54225	7837	44811	44847	59119	59119					-0.046896594140207526
SLWSLLVTL	9	Unmodified	_SLWSLLVTL_					0	0	0		ENSG00000145248|ENST00000273861|SLC10A4	ENSG00000145248|ENST00000273861|SLC10A4	ENSG00000145248|ENST00000273861|SLC10A4	MULTI-MSMS	OvCa99_classI_Rep5	1	516.3098754882812	2	516.310418	1030.60628	1.8408	0.00095045	-2.9918	-0.0015447	-1.1509	-0.00059424	516.3088591190682	99.882	0.95662	99.882	99.488	100.44	0					55	22	3	0	0	0	0.22961	1	11045	11045		71.296	3.802	1	4286500			54226	5213	44812	44848	59120	59120					0.0922038814253483
SLWTRYVI	8	Unmodified	_SLWTRYVI_					0	0	0			REV__ENST00000394673.6_2_17:30678870-30685529:+|nuORF	REV__ENST00000394673.6_2_17:30678870-30685529:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	519.2931518554688	2	519.292559	1036.57057	0.36048	0.0001872	0.091284	4.7403E-05	0.45177	0.0002346	519.2925810165003	109.55	1.3356	109.37	109.17	110.5	-0.17237					43	26	2	0	0	0	0.64026	1	10295	10295		55.504	5.9682	1	115850	+		54227	25301	44813	44849	59121	59121					0.053743506855198575
SLYAKVRKK	9	Unmodified	_SLYAKVRKK_					0	0	0		ENSG00000136205|ENST00000311160|TNS3;nc|ENSG00000136205|Q68CZ2-3|TNS3	ENSG00000136205|ENST00000311160|TNS3	ENSG00000136205|ENST00000311160|TNS3	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.84765625	2	546.848033	1091.68151	0.37252	0.00020371	-0.61652	-0.00033714	-0.244	-0.00013343	546.8478208705254	33.13	1.0404	30.435	30.203	31.243	-2.6954					54	20	5	0	0	0	0.50149	1	855	855		42.396	0	1	235940			54228	4471	44814	44850	59122	59122					0.13933990393616114
SLYALNILAI	10	Unmodified	_SLYALNILAI_					0	0	0			REV__tr|A0A7D7A776|A0A7D7A776_9CLOTPolysaccharidebiosynthesisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18800PE=3SV=1	REV__tr|A0A7D7A776|A0A7D7A776_9CLOTPolysaccharidebiosynthesisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18800PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2733154296875	2	545.828975	1089.6434	2.4069	0.0013137	0.64496	0.00035204	3.0518	0.0016658	545.8291922017827	89.115	0.75648	89.115	88.843	89.6	0					48	18	3	0	0	0	0.026931	1	9574	9574		37.812	21.094	1	1470100	+		54229	32668	44815	44851	59123	59123					0.10216059688264068
SLYEMRNKG	9	Unmodified	_SLYEMRNKG_					0	0	0			REV__ENSG00000092200|ENST00000400017|RPGRIP1	REV__ENSG00000092200|ENST00000400017|RPGRIP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.29150390625	2	549.274041	1096.53353	-0.9372	-0.00051478	1.4093	0.00077411	0.47213	0.00025933	549.2746751702952	70.079	0.686	66.598	66.297	66.983	-3.4812					18	13	2	0	0	0	0.027462	1	5252	5252		23.042	0	1	55800	+		54230	17265	44816	44852	59124	59124					-0.010876889225755804
SLYFISDI	8	Unmodified	_SLYFISDI_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|159|2|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|159|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.81781005859375	2	479.250026	956.485499	2.0386	0.00097698	-1.0161	-0.00048695	1.0225	0.00049003	479.25002112808767	78.02	1.1983	78.02	77.757	78.955	0					41	28	3	0	0	0	0.028476	1	7956	7956		23.042	0	1	740320	+		54231	28191	44817	44853	59125	59125					0.005515604290508236
SLYGLGGSK	9	Unmodified	_SLYGLGGSK_					0	0	0		ENSG00000185479|ENST00000252252|KRT6B;ENSG00000170465|ENST00000252250|KRT6C;CON__P48668;CON__P04259;ENSG00000205420|ENST00000330722|KRT6A;CON__P02538	ENSG00000185479|ENST00000252252|KRT6B	ENSG00000185479|ENST00000252252|KRT6B	MULTI-MSMS	OvCa9_classI_Rep4_	4	441.2410583496094	2	441.239993	880.465432	-0.96259	-0.00042473	1.2269	0.00054136	0.26431	0.00011662	441.240365547296	69.688	2.1368	66.207	65.713	67.849	-3.4812					113	43	4	0	0	0	0.22035	3	5234	5234;5248;5266		72.879	13.166	1	1623700		+	54232	620	44818	44854	59126;59127;59128	59126					0.02041809489105617
SLYHRVLLY	9	Unmodified	_SLYHRVLLY_					0	0	0		ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	MULTI-MSMS	OvCa9_classI_Rep3	3	582.3329467773438	2	582.332216	1162.64988	-1.8874	-0.0010991	1.4898	0.00086757	-0.39755	-0.0002315	582.3330395902259	87.552	2.2091	85.376	84.934	87.143	-2.1768					127	43	5	0	0	0	0.074342	7	5274	5270;5274;5278;5284;5291;5298;5305		104.75	44.88	1	1100800			54233	2903	44819	44855	59129;59130;59131;59132;59133;59134;59135	59130					0.07505997639668749
SLYHRVLLY	9	Unmodified	_SLYHRVLLY_					0	0	0		ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	MULTI-MSMS	OvCa9_classI_Rep4_	4	582.332763671875	2	582.332216	1162.64988	-3.0508	-0.0017766	1.2764	0.00074326	-1.7744	-0.0010333	582.3328478098388	87.995	2.4456	85.392	84.977	87.422	-2.6027					128	48	5	0	0	0	0.059253	7	7489	7478;7489;7500;7512;7524;7538;7550		113.41	46.982	1	853860			54234	2903	44819	44855	59136;59137;59138;59139;59140;59141;59142	59137					0.07505997639668749
SLYHRVLLY	9	Unmodified	_SLYHRVLLY_					0	0	0		ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	MULTI-MATCH	OvCa99_classI_Rep5	1		2	582.332216	1162.64988	1.6923	0.00098546	8.8899	0.0051769	10.582	0.0061623	582.337341488832	85.543	0.61993	85.543	85.292	85.912	0	-0.015303	0.0073566	NaN	113.41	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1120500			54235	2903	44819	44855							0.07505997639668749
SLYHRVLLY	9	Unmodified	_SLYHRVLLY_					0	0	0		ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	ENSG00000112379|ENST00000251691|ARFGEF3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	582.332216	1162.64988	0.96349	0.00056107	8.9832	0.0052312	9.9467	0.0057923	582.3373289002556	87.354	1.4287	85.923	85.642	87.071	-1.4311	0.36416	0.0074652	NaN	113.41	57	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102710			54236	2903	44819	44855							0.07505997639668749
SLYIHMFL	8	Unmodified	_SLYIHMFL_					0	0	0		ENSG00000176136|ENST00000589410|MC5R	ENSG00000176136|ENST00000589410|MC5R	ENSG00000176136|ENST00000589410|MC5R	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.78564453125	2	512.270238	1022.52592	2.3356	0.0011965	-0.10744	-5.5039E-05	2.2282	0.0011414	512.2707849939283	84.262	0.46347	84.262	84.009	84.472	0					22	10	3	0	0	0	0.028476	1	8804	8804		26.796	4.8362	1	237770			54237	7584	44820	44856	59143	59143					0.015562035478410507
SLYNCLMPL	9	Unmodified	_SLYNCLMPL_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3	REV__nc|ENSG00000198838|Q15413-2|RYR3	MULTI-MSMS	OvCa9_classI_Rep3	3	527.2618408203125	2	527.259013	1052.50347	-0.070225	-3.7027E-05	3.7485	0.0019764	3.6783	0.0019394	527.2609378955284	106.61	1.4567	105.34	104.96	106.41	-1.267					71	28	4	0	0	0	0.19758	1	7532	7532		76.774	7.9873	1	624930	+		54238	23074	44821	44857	59144	59144					-0.020677639121004177
SLYNCLMPL	9	Unmodified	_SLYNCLMPL_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3	REV__nc|ENSG00000198838|Q15413-2|RYR3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	527.259013	1052.50347	-0.58263	-0.0003072	4.6377	0.0024453	4.055	0.0021381	527.2612919280778	105.53	2.0915	105.09	104.65	106.74	-0.43642	-0.18316	-2.0585E-05	NaN	76.774	95	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233510	+		54239	23074	44821	44857							-0.020677639121004177
SLYNLGGSK	9	Unmodified	_SLYNLGGSK_					0	0	0		CON__Q5XQN5;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647	CON__Q5XQN5;ENST00000552629.5_1_12:52910419-52914113:-|nuORF	ENST00000552629.5_1_12:52910419-52914113:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	469.7502136230469	2	469.750724	937.486896	-1.259	-0.00059142	1.3556	0.0006368	0.096614	4.5384E-05	469.7511923496125	68.222	1.783	65.601	64.982	66.765	-2.6203					91	35	3	0	0	0	0.1243	3	5362	5357;5362;5381		90.601	14.095	1	721920		+	54240	653;627	44822	44858	59145;59146;59147	59146					0.015651945178206006
SLYNLGGSK	9	Unmodified	_SLYNLGGSK_					0	0	0		CON__Q5XQN5;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647	CON__Q5XQN5;ENST00000552629.5_1_12:52910419-52914113:-|nuORF	ENST00000552629.5_1_12:52910419-52914113:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	469.75201416015625	2	469.750724	937.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.946	1	65.455	64.955	65.955	-3.4902								0	0	0	0.042186	1	5138	5138		80.455	3.6805	1			+	54241	653;627	44822	44858	59148	59148					0.015651945178206006
SLYNLGGSK	9	Unmodified	_SLYNLGGSK_					0	0	0		CON__Q5XQN5;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647	CON__Q5XQN5;ENST00000552629.5_1_12:52910419-52914113:-|nuORF	ENST00000552629.5_1_12:52910419-52914113:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	469.7517395019531	2	469.750724	937.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.05	1	65.56	65.06	66.06	-3.4902								0	0	0	0.022555	1	5151	5151		96.034	19.259	1			+	54242	653;627	44822	44858	59149	59149					0.015651945178206006
SLYNLGGSK	9	Unmodified	_SLYNLGGSK_					0	0	0		CON__Q5XQN5;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647	CON__Q5XQN5;ENST00000552629.5_1_12:52910419-52914113:-|nuORF	ENST00000552629.5_1_12:52910419-52914113:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	469.7516174316406	2	469.750724	937.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.254	1	65.773	65.273	66.273	-3.4812								0	0	0	0.042186	1	5176	5176		80.455	21.673	1			+	54243	653;627	44822	44858	59150	59150					0.015651945178206006
SLYRASLE	8	Unmodified	_SLYRASLE_					0	0	0			REV__ENST00000593156.1_1_17:73913837-73918141:-|nuORF	REV__ENST00000593156.1_1_17:73913837-73918141:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	469.7518615722656	2	469.750724	937.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.148	1	65.658	65.158	66.158	-3.4902								0	0	0	0.30129	1	5163	5163		71.296	12.514	1		+		54244	22746	44823	44859	59151	59151					0.015651945178206006
SLYRAVET	8	Unmodified	_SLYRAVET_					0	0	0			REV__HEY2|p.C210Lfs*116|1|0.02|ENSG00000135547|chr6:125759415-125759416|-/C|frameshift_variant	REV__HEY2|p.C210Lfs*116|1|0.02|ENSG00000135547|chr6:125759415-125759416|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	469.7500305175781	2	469.750724	937.486896	-1.259	-0.00059142	1.3556	0.0006368	0.096614	4.5384E-05	469.7511923496125	68.222	1.783	65.601	64.982	66.765	-2.6203					91	35	3	0	0	0	0.62474	1	5375	5375		58.782	0	1	721920	+		54245	19300	44824	44860	59152	59152					0.01565194517809232
SLYRAVETL	9	Unmodified	_SLYRAVETL_					0	0	0			REV__HEY2|p.C210Lfs*116|1|0.02|ENSG00000135547|chr6:125759415-125759416|-/C|frameshift_variant	REV__HEY2|p.C210Lfs*116|1|0.02|ENSG00000135547|chr6:125759415-125759416|-/C|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.8136596679688	2	526.292756	1050.57096	-0.87583	-0.00046094	0.62038	0.0003265	-0.25545	-0.00013444	526.2930472904142	96.081	0.91391	93.655	93.457	94.371	-2.4256					28	17	2	0	0	0	0.027447	1	8502	8502		47.657	0	1	67195	+		54246	19300	44825	44861	59153	59153					0.04769725614710296
SLYRNAIN	8	Unmodified	_SLYRNAIN_					0	0	0			REV__tr|A0A553SJP0|A0A553SJP0_NIACICytochromedubiquinoloxidasesubunitIIOS=NialliacirculansOX=1397GN=CEQ21_17325PE=3SV=1	REV__tr|A0A553SJP0|A0A553SJP0_NIACICytochromedubiquinoloxidasesubunitIIOS=NialliacirculansOX=1397GN=CEQ21_17325PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	476.746337890625	2	475.756341	949.498129	0.27385	0.00013028	-0.42978	-0.00020447	-0.15593	-7.4187E-05	475.7561427789235	46.375	0.69864	46.375	46.154	46.852	0					45	15	5	0	0	0	0.028476	1	3241	3241		45.952	8.7928	1	732410	+		54247	30023	44826	44862	59154	59154					0.021360166119393398
SLYSGLLERL	10	Unmodified	_SLYSGLLERL_					0	0	0		ENSG00000137507|ENST00000260061|LRRC32	ENSG00000137507|ENST00000260061|LRRC32	ENSG00000137507|ENST00000260061|LRRC32	MULTI-MSMS	OvCa99_classI_Rep5	1	575.8274536132812	2	575.826963	1149.63937	1.5181	0.00087416	0.033064	1.9039E-05	1.5512	0.0008932	575.8268623142533	125.72	0.55685	125.72	125.53	126.09	0					26	11	3	0	0	0	0.16967	1	14534	14534		99.013	13.852	1	462370			54248	4594	44827	44863	59155	59155					0.07053970194579051
SLYSQVHQI	9	Unmodified	_SLYSQVHQI_					0	0	0		MED12|p.K1768Qfs*3|1|0.17|ENSG00000184634|chrX:71136550-71136551|-/C|frameshift_variant;nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12;MED12|p.V1511G|1|0.05|ENSG00000184634|chrX:71133127-71133127|T/G|missense_variant	MED12|p.K1768Qfs*3|1|0.17|ENSG00000184634|chrX:71136550-71136551|-/C|frameshift_variant	MED12|p.K1768Qfs*3|1|0.17|ENSG00000184634|chrX:71136550-71136551|-/C|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	537.7838745117188	2	537.782556	1073.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.802	1	77.802	77.302	78.302	0								0	0	0	0.026392	1	7860	7860		120.87	41.417	1				54249	8177	44828	44864	59156	59156					0.016725549548937124
SLYYLFDM	8	Unmodified	_SLYYLFDM_					0	0	0			REV__ENSG00000186204|ENST00000550308|CYP4F12	REV__ENSG00000186204|ENST00000550308|CYP4F12	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2815551757812	2	526.243886	1050.47322	1.019	0.00053622	-2.7377	-0.0014407	-1.7187	-0.00090448	526.2422936229074	119.51	0.45454	119.51	119.29	119.74	0					25	11	3	0	0	0	0.028476	1	13741	13741		24.203	0	1	305210	+		54250	22567	44829	44865	59157	59157					-0.049997993056422274
SMAFLQSSF	9	Unmodified	_SMAFLQSSF_					0	0	0		nc|ENSG00000205084|Q9H6L2-3|TMEM231;ENSG00000205084|ENST00000258173|TMEM231;nc|ENSG00000205084|Q9H6L2-2|TMEM231	nc|ENSG00000205084|Q9H6L2-3|TMEM231	nc|ENSG00000205084|Q9H6L2-3|TMEM231	MULTI-MSMS	OvCa9_classI_Rep3	3	508.73822021484375	2	509.239135	1016.46372	1.5833	0.00080629	1.5319	0.00078011	3.1152	0.0015864	509.2399801613584	60.9	1.9539	57.832	56.783	58.737	-3.0685					78	52	2	0	0	0	0.63422	1	2017	2017		27.882	4.8398	1	24864			54251	9050	44830	44866	59158	59158					-0.04385567591157269
SMAGSNVYLT	10	Unmodified	_SMAGSNVYLT_					0	0	0		nc|ENSG00000170468|Q9H6W3-2|RIOX1;ENSG00000170468|ENST00000304061|RIOX1	nc|ENSG00000170468|Q9H6W3-2|RIOX1	nc|ENSG00000170468|Q9H6W3-2|RIOX1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.7681884765625	2	521.747324	1041.4801	-0.43052	-0.00022462	-3.061	-0.001597	-3.4915	-0.0018217	521.7455958473198	78.077	1.0047	75.261	74.922	75.926	-2.8165					34	20	3	0	0	0	0.02658	1	6236	6236		45.972	16.823	1	131030			54252	7106	44831	44867	59159	59159					-0.03898486425077863
SMAGSNVYLT	10	Unmodified	_SMAGSNVYLT_					0	0	0		nc|ENSG00000170468|Q9H6W3-2|RIOX1;ENSG00000170468|ENST00000304061|RIOX1	nc|ENSG00000170468|Q9H6W3-2|RIOX1	nc|ENSG00000170468|Q9H6W3-2|RIOX1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.747324	1041.4801	-0.15831	-8.2598E-05	-1.9481	-0.0010164	-2.1064	-0.001099	521.7458176568966	77.098	0.8849	75.308	74.894	75.779	-1.7894	0.023934	0.0010411	NaN	45.972	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41594			54253	7106	44831	44867							-0.03898486425077863
SMDIPLDL	8	Unmodified	_SMDIPLDL_					0	0	0		ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;KLHDC10-TGIF1|1|fusion;nc|ENSG00000177426|Q15583|TGIF1	ENSG00000177426|ENST00000343820|TGIF1	ENSG00000177426|ENST00000343820|TGIF1	MULTI-MSMS	OvCa9_classI_Rep2	2	452.2303466796875	2	452.228236	902.44192	2.7012	0.0012216	1.6323	0.00073819	4.3336	0.0019598	452.2288477187877	43.095	1.0892	40.386	40.114	41.203	-2.7097					36	21	2	0	0	0	0.35163	2	2376	2365;2376		97.473	5.2821	1	254790			54254	7679	44832	44868	59160;59161	59161					-0.013203723397282374
SMDIPLDL	8	Unmodified	_SMDIPLDL_					0	0	0		ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;KLHDC10-TGIF1|1|fusion;nc|ENSG00000177426|Q15583|TGIF1	ENSG00000177426|ENST00000343820|TGIF1	ENSG00000177426|ENST00000343820|TGIF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	452.23114013671875	2	452.228236	902.44192	-0.2886	-0.00013051	4.2446	0.0019195	3.956	0.001789	452.23011189825104	43.096	1.5922	40.089	39.801	41.393	-3.0074					56	30	2	0	0	0	0.50674	1	2079	2079		76.847	0	1	1124600			54255	7679	44832	44868	59162	59162					-0.013203723397282374
SMDIPLDL	8	Unmodified	_SMDIPLDL_					0	0	0		ENSG00000177426|ENST00000343820|TGIF1;nc|ENSG00000177426|Q15583-3|TGIF1;KLHDC10-TGIF1|1|fusion;nc|ENSG00000177426|Q15583|TGIF1	ENSG00000177426|ENST00000343820|TGIF1	ENSG00000177426|ENST00000343820|TGIF1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	452.228236	902.44192	0.021544	9.743E-06	-0.59398	-0.00026861	-0.57243	-0.00025887	452.22506262471404	40.777	0.89649	40.777	40.479	41.375	0	0.19548	-0.0019748	NaN	97.473	30	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73631			54256	7679	44832	44868							-0.013203723397282374
SMDNRALVG	9	Unmodified	_SMDNRALVG_					0	0	0			REV__ENSG00000198520|ENST00000535358|ARMH1	REV__ENSG00000198520|ENST00000535358|ARMH1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.79705810546875	2	481.739834	961.465115	-0.26432	-0.00012734	0.59927	0.00028869	0.33495	0.00016136	481.73996881213304	116.77	0.68147	115.41	115.14	115.82	-1.3645					29	12	4	0	0	0	0.027462	1	10882	10882		24.203	10.749	1	23512	+		54257	23023	44833	44869	59163	59163					-0.017159335024075517
SMDNRALVG	9	Unmodified	_SMDNRALVG_					0	0	0			REV__ENSG00000198520|ENST00000535358|ARMH1	REV__ENSG00000198520|ENST00000535358|ARMH1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	481.739834	961.465115	-0.8487	-0.00040885	1.9425	0.00093579	1.0938	0.00052693	481.7404848279698	115.62	0.64226	115.5	115.19	115.84	-0.11777	0.04714	0.00067145	NaN	24.203	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18314	+		54258	23023	44833	44869							-0.017159335024075517
SMEEFVELT	9	Unmodified	_SMEEFVELT_					0	0	0			REV__tr|A0A553SMQ4|A0A553SMQ4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_22895PE=4SV=1	REV__tr|A0A553SMQ4|A0A553SMQ4_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_22895PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.2674560546875	2	542.74699	1083.47943	-0.93218	-0.00050594	3.4295	0.0018614	2.4973	0.0013554	542.7488837973165	77.28	0.92159	74.464	74.244	75.165	-2.8165					28	18	2	0	0	0	0.027433	1	6202	6202		42.396	0	1	58526	+		54259	30360	44834	44870	59164	59164					-0.058973258647938565
SMEKSHHF	8	Unmodified	_SMEKSHHF_					0	0	0		nc|ENSG00000168491|Q8TBZ0-2|CCDC110;ENSG00000168491|ENST00000307588|CCDC110	nc|ENSG00000168491|Q8TBZ0-2|CCDC110	nc|ENSG00000168491|Q8TBZ0-2|CCDC110	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.21795654296875	2	501.726726	1001.4389	-2.4687	-0.0012386	2.2932	0.0011505	-0.17554	-8.8075E-05	502.22969010862806	126.68	0.59467	125.27	124.97	125.56	-1.4143					17	11	2	0	0	0	0.028476	1	12096	12096		24.203	10.427	1	9077.9			54260	6912	44835	44871	59165	59165					-0.061762026738733766
SMEKSHHF	8	Unmodified	_SMEKSHHF_					0	0	0		nc|ENSG00000168491|Q8TBZ0-2|CCDC110;ENSG00000168491|ENST00000307588|CCDC110	nc|ENSG00000168491|Q8TBZ0-2|CCDC110	nc|ENSG00000168491|Q8TBZ0-2|CCDC110	MULTI-MATCH	OvCa9_classI_Rep2	2		2	501.726726	1001.4389	0.025001	1.2543E-05	-0.66903	-0.00033567	-0.64403	-0.00032313	501.72651534957373	125.64	0.44575	125.4	125.21	125.65	-0.2359	0.066848	-0.00067778	NaN	24.203	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13415			54261	6912	44835	44871							-0.061762026738733766
SMEKSHHF	8	Unmodified	_SMEKSHHF_					0	0	0		nc|ENSG00000168491|Q8TBZ0-2|CCDC110;ENSG00000168491|ENST00000307588|CCDC110	nc|ENSG00000168491|Q8TBZ0-2|CCDC110	nc|ENSG00000168491|Q8TBZ0-2|CCDC110	MULTI-MATCH	OvCa9_classI_Rep3	3		2	501.726726	1001.4389	1.0326	0.0005181	-0.92876	-0.00046598	0.10388	5.2118E-05	502.2277623834401	126.41	0.8826	125.34	124.66	125.55	-1.0715	0.00075103	-0.0009384	NaN	24.203	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18600			54262	6912	44835	44871							-0.061762026738733766
SMFCPLKLI	9	Unmodified	_SMFCPLKLI_					0	0	0		ENST00000534294.5_1_11:118074137-118095689:-|nuORF	ENST00000534294.5_1_11:118074137-118095689:-|nuORF	ENST00000534294.5_1_11:118074137-118095689:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.8028564453125	2	526.287574	1050.56059	-0.0058437	-3.0755E-06	0.94721	0.0004985	0.94136	0.00049543	526.2875327845167	78.97	1.3232	77.23	76.903	78.227	-1.7398					77	25	5	0	0	0	0.027448	1	6723	6723		35.618	0.41757	1	67954			54263	13352	44836	44872	59166	59166					0.037337033642870665
SMFCPLKLI	9	Unmodified	_SMFCPLKLI_					0	0	0		ENST00000534294.5_1_11:118074137-118095689:-|nuORF	ENST00000534294.5_1_11:118074137-118095689:-|nuORF	ENST00000534294.5_1_11:118074137-118095689:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.8040771484375	2	526.287574	1050.56059	-1.3071	-0.00068793	2.669	0.0014046	1.3618	0.00071671	526.2880016200885	80.046	1.1691	77.295	76.891	78.06	-2.7514					66	23	5	0	0	0	0.027448	1	6613	6613		53.351	19.836	1	99633			54264	13352	44836	44872	59167	59167					0.037337033642870665
SMILYNRKK	9	Unmodified	_SMILYNRKK_					0	0	0		CAMTA1|p.V1621Gfs*12|1|0.03|ENSG00000171735|chr1:7751370-7751371|-/GGGACCACGTGGTTATTCAGCTGGAGTGGGTT|frameshift_variant;nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1	CAMTA1|p.V1621Gfs*12|1|0.03|ENSG00000171735|chr1:7751370-7751371|-/GGGACCACGTGGTTATTCAGCTGGAGTGGGTT|frameshift_variant	CAMTA1|p.V1621Gfs*12|1|0.03|ENSG00000171735|chr1:7751370-7751371|-/GGGACCACGTGGTTATTCAGCTGGAGTGGGTT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.8046875	2	576.831526	1151.6485	2.3342	0.0013464	3.2466	0.0018728	5.5808	0.0032192	576.833414182723	99.35	0.53761	99.35	99.115	99.652	0					24	12	3	0	0	0	0.027462	1	10985	10985		21.96	9.7532	1	517910			54265	182	44837	44873	59168	59168					0.07874040279239125
SMILYNRKK	9	Unmodified	_SMILYNRKK_					0	0	0		CAMTA1|p.V1621Gfs*12|1|0.03|ENSG00000171735|chr1:7751370-7751371|-/GGGACCACGTGGTTATTCAGCTGGAGTGGGTT|frameshift_variant;nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1	CAMTA1|p.V1621Gfs*12|1|0.03|ENSG00000171735|chr1:7751370-7751371|-/GGGACCACGTGGTTATTCAGCTGGAGTGGGTT|frameshift_variant	CAMTA1|p.V1621Gfs*12|1|0.03|ENSG00000171735|chr1:7751370-7751371|-/GGGACCACGTGGTTATTCAGCTGGAGTGGGTT|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	576.831526	1151.6485	-1.564	-0.00090215	5.9702	0.0034438	4.4063	0.0025417	576.8349311115068	100.15	0.6445	99.324	99.162	99.807	-0.83052	-0.012868	0.0021473	NaN	21.96	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19536			54266	182	44837	44873							0.07874040279239125
SMIVVPFLA	9	Unmodified	_SMIVVPFLA_					0	0	0		tr|A0A553SHX2|A0A553SHX2_NIACIPTStrehalosetransportersubunitIIBCOS=NialliacirculansOX=1397GN=treBPE=4SV=1;tr|A0A7D6VRA6|A0A7D6VRA6_9CLOTPTSsystemtrehalose-specificEIIBCcomponentOS=ClostridiumintestinaleOX=36845GN=trePPE=4SV=1	tr|A0A553SHX2|A0A553SHX2_NIACIPTStrehalosetransportersubunitIIBCOS=NialliacirculansOX=1397GN=treBPE=4SV=1	tr|A0A553SHX2|A0A553SHX2_NIACIPTStrehalosetransportersubunitIIBCOS=NialliacirculansOX=1397GN=treBPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.7835388183594	2	488.780439	975.546325	0.15171	7.4154E-05	3.3741	0.0016492	3.5259	0.0017234	488.78198284922195	64.057	2.224	60.582	59.386	61.61	-3.475					96	45	4	0	0	0	0.39645	1	4533	4533		52.299	0.96372	1	754000			54267	33322	44838	44874	59169	59169					0.057573742076328926
SMIVVPFLA	9	Unmodified	_SMIVVPFLA_					0	0	0		tr|A0A553SHX2|A0A553SHX2_NIACIPTStrehalosetransportersubunitIIBCOS=NialliacirculansOX=1397GN=treBPE=4SV=1;tr|A0A7D6VRA6|A0A7D6VRA6_9CLOTPTSsystemtrehalose-specificEIIBCcomponentOS=ClostridiumintestinaleOX=36845GN=trePPE=4SV=1	tr|A0A553SHX2|A0A553SHX2_NIACIPTStrehalosetransportersubunitIIBCOS=NialliacirculansOX=1397GN=treBPE=4SV=1	tr|A0A553SHX2|A0A553SHX2_NIACIPTStrehalosetransportersubunitIIBCOS=NialliacirculansOX=1397GN=treBPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	488.780439	975.546325	-1.1851	-0.00057927	5.0999	0.0024927	3.9147	0.0019134	488.78274455306115	63.342	1.5707	60.597	59.695	61.266	-2.7444	0.0078527	0.0010275	NaN	52.299	63	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148180			54268	33322	44838	44874							0.057573742076328926
SMKALTKKV	9	Unmodified	_SMKALTKKV_					0	0	0			REV__ENSG00000138696|ENST00000515059|BMPR1B	REV__ENSG00000138696|ENST00000515059|BMPR1B	MULTI-MSMS	OvCa99_classI_Rep5	1	503.31005859375	2	503.309895	1004.60524	1.171	0.00058937	1.0161	0.00051143	2.1871	0.0011008	503.3103349576855	145.18	1.088	145.18	144.84	145.93	0					40	22	3	0	0	0	0.55011	1	16989	16989		37.812	2.1932	1	184560	+		54269	19561	44839	44875	59170	59170					0.10311850501966546
SMKPVSGHPF	10	Unmodified	_SMKPVSGHPF_					0	0	0		EZH1|p.A344Efs*38|1|0.18|ENSG00000108799|chr17:42713381-42713382|TG/-|frameshift_variant;ENST00000586103.5_1_17:40855746-40880959:-|nuORF;nc|ENSG00000108799|Q92800-3|EZH1;ENSG00000108799|ENST00000428826|EZH1;nc|ENSG00000108799|Q92800-2|EZH1;ENST00000590082.1_1_17:40876593-40880959:-|nuORF	EZH1|p.A344Efs*38|1|0.18|ENSG00000108799|chr17:42713381-42713382|TG/-|frameshift_variant	EZH1|p.A344Efs*38|1|0.18|ENSG00000108799|chr17:42713381-42713382|TG/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	544.3460083007812	2	543.773677	1085.5328	0.32887	0.00017883	-0.19414	-0.00010557	0.13473	7.3263E-05	544.274486099476	130.66	1.0262	129.54	129.32	130.34	-1.1249					24	20	2	0	0	0	0.027028	1	10367	10367		24.519	0	1	11950			54270	2676	44840	44876	59171	59171					-0.006544835716113084
SMLDDLRNV	9	Unmodified	_SMLDDLRNV_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46314678-46340855:-|nuORF;ENST00000521987.1_1_21:46321596-46323430:-|nuORF	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MSMS	OvCa99_classI_Rep5	1	531.7669067382812	2	531.766049	1061.51754	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.65	1	107.65	107.15	108.15	0								0	0	0	0.0011673	1	12151	12151		158.07	54.018	1				54271	6050	44841	44877	59172	59172					-0.01075395159477921
SMLLKLTPL	9	Unmodified	_SMLLKLTPL_					0	0	0			REV__ST7|p.I487Hfs*?|1|0.05|ENSG00000004866|chr7:117229814-117229815|-/T|frameshift_variant	REV__ST7|p.I487Hfs*?|1|0.05|ENSG00000004866|chr7:117229814-117229815|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.7978515625	2	508.314646	1014.61474	-0.12005	-6.1021E-05	0.35391	0.0001799	0.23387	0.00011888	508.31468329393255	110.32	0.395	110.15	109.96	110.35	-0.17236					13	7	2	0	0	0	0.027447	1	10361	10361		66.429	15.094	1	33808	+		54272	29458	44842	44878	59173	59173					0.10801618787468215
SMLLLLSVFL	10	Unmodified	_SMLLLLSVFL_					0	0	0		tr|A0A553SGH1|A0A553SGH1_NIACISporegernimationproteinKCOS=NialliacirculansOX=1397GN=CEQ21_10805PE=3SV=1	tr|A0A553SGH1|A0A553SGH1_NIACISporegernimationproteinKCOS=NialliacirculansOX=1397GN=CEQ21_10805PE=3SV=1	tr|A0A553SGH1|A0A553SGH1_NIACISporegernimationproteinKCOS=NialliacirculansOX=1397GN=CEQ21_10805PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2894897460938	2	568.343403	1134.67225	-0.04428	-2.5166E-05	3.041	0.0017283	2.9967	0.0017032	568.3450676288213	53.024	0.6062	53.024	52.741	53.347	0					31	13	3	0	0	0	0.027021	1	4230	4230		29.15	1.2673	1	916810			54273	33156	44843	44879	59174	59174					0.1103046099308358
SMLPLQVIL	9	Unmodified	_SMLPLQVIL_					0	0	0			REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|247|2|anti-sense	REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|247|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.7630615234375	2	507.306821	1012.59909	-1.1192	-0.0005678	-1.6858	-0.0008552	-2.805	-0.001423	507.30564732432845	121.2	0.59253	121.01	120.7	121.3	-0.19718					19	11	2	0	0	0	0.027448	1	11687	11687		53.351	9.2347	1	7596.9	+		54274	28548	44844	44880	59175	59175					0.09329332270431223
SMLPLQVIL	9	Unmodified	_SMLPLQVIL_					0	0	0			REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|247|2|anti-sense	REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|247|2|anti-sense	MULTI-MATCH	OvCa9_classI_Rep3	3		2	507.306821	1012.59909	0.84927	0.00043084	-4.366	-0.0022149	-3.5167	-0.001784	507.3044333754507	121.99	0.73327	120.96	120.64	121.37	-1.0286	0.0054118	-0.0012936	NaN	53.351	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13330	+		54275	28548	44844	44880							0.09329332270431223
SMNSRNPGPRE	11	Unmodified	_SMNSRNPGPRE_					0	0	0			REV__nc|ENSG00000182979|Q13330-3|MTA1	REV__nc|ENSG00000182979|Q13330-3|MTA1	MULTI-MSMS	OvCa99_classI_Rep5	1	622.7914428710938	2	622.79366	1243.57277	-0.97847	-0.00060938	-2.13	-0.0013265	-3.1084	-0.0019359	622.7923711610008	37.508	0.64271	37.508	37.298	37.94	0					40	13	5	0	0	0	0.62666	1	2056	2056		40.058	2.8991	1	2093700	+		54276	22331	44845	44881	59176	59176					-0.03927588638975976
SMNSRNPGPRE	11	Unmodified	_SMNSRNPGPRE_					0	0	0			REV__nc|ENSG00000182979|Q13330-3|MTA1	REV__nc|ENSG00000182979|Q13330-3|MTA1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	622.79366	1243.57277	-0.97847	-0.00060938	-2.13	-0.0013265	-3.1084	-0.0019359	622.7923711610008	37.508	0.64271	37.508	37.298	37.94	0	0	0	NaN	40.058	40	13	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2093700	+		54277	22331	44845	44881							-0.03927588638975976
SMPEKWKL	8	Unmodified	_SMPEKWKL_					0	0	0		ENSG00000100225|ENST00000266087|FBXO7;nc|ENSG00000100225|Q9Y3I1-3|FBXO7;nc|ENSG00000100225|Q9Y3I1-2|FBXO7;ENST00000492535.1_1_22:32875160-32883832:+|nuORF	ENSG00000100225|ENST00000266087|FBXO7	ENSG00000100225|ENST00000266087|FBXO7	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.3026123046875	2	509.773145	1017.53174	-0.74269	-0.0003786	1.4571	0.00074281	0.71444	0.0003642	509.77431684066556	50.293	0.39531	50.293	50.114	50.509	0					13	8	2	0	0	0	0.028476	1	3824	3824		39.253	5.0803	1	255940			54278	2029	44846	44882	59177	59177					0.023673020594856098
SMPLYSVEV	9	Unmodified	_SMPLYSVEV_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1;REV__ENST00000367256.9_1_6:152443573-152639413:-|nuORF	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.810791015625	2	512.754618	1023.49468	-0.56687	-0.00029066	2.9668	0.0015212	2.3999	0.0012306	513.2586917811553	63.511	0.24107	60.036	59.868	60.109	-3.475					6	4	2	0	0	0	0.027462	1	4468	4468		45.952	13.997	1	13770	+		54279	18991;24893	44847	44883	59178	59178					-0.016124142769172067
SMPMISVLGK	10	Unmodified	_SMPMISVLGK_					0	0	0		ENST00000497070.1_1_3:184055391-184056524:+|nuORF	ENST00000497070.1_1_3:184055391-184056524:+|nuORF	ENST00000497070.1_1_3:184055391-184056524:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.8091430664062	2	531.787938	1061.56132	0.57031	0.00030328	1.2391	0.00065894	1.8094	0.00096222	531.7875379680717	74.311	0.42171	74.311	74.056	74.478	0					13	10	2	0	0	0	0.026891	1	7354	7354		39.253	11.371	1	1039800			54280	12801	44848	44884	59179	59179					0.033004980133227946
SMREALREL	9	Unmodified	_SMREALREL_					0	0	0		nc|ENSG00000244474|P22310-2|UGT1A4;ENSG00000244474|ENST00000373409|UGT1A4	nc|ENSG00000244474|P22310-2|UGT1A4	nc|ENSG00000244474|P22310-2|UGT1A4	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.7953491210938	2	552.79514	1103.57573	-0.68574	-0.00037907	-1.5607	-0.00086274	-2.2464	-0.0012418	552.7943065075228	70.042	1.1691	66.561	66.105	67.275	-3.4812					63	23	4	0	0	0	0.27001	1	5296	5296		66.429	9.7082	1	901190			54281	9397	44849	44885	59180	59180					0.028082864858333778
SMRHPPEQT	9	Unmodified	_SMRHPPEQT_					0	0	0		ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.7227172851562	2	541.756015	1081.49748	-2.7384	-0.0014835	-2.2445	-0.0012159	-4.9828	-0.0026995	541.7547428991481	49.573	1.5611	46.432	45.675	47.236	-3.1416					51	29	3	0	0	0	0.027462	1	2817	2817		44.117	30.341	1	72793			54282	1091	44850	44886	59181	59181					-0.04001146099403741
SMTLAIHEI	9	Unmodified	_SMTLAIHEI_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	OvCa99_classI_Rep5	1	507.769775390625	2	507.76806	1013.52157	3.1823	0.0016159	-1.4894	-0.00075627	1.6929	0.00085962	507.76733842489404	97.76	0.89735	97.76	97.479	98.376	0					34	20	2	0	0	0	0.013645	2	10763	10739;10763		157.21	50.793	1	6598200			54283	5090	44851	44887	59182;59183	59183					0.01534694334247888
SMTLAIHEI	9	Unmodified	_SMTLAIHEI_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7690734863281	2	507.76806	1013.52157	-1.13	-0.00057377	0.9801	0.00049766	-0.1499	-7.6113E-05	507.7686130602699	99.652	1.6944	97.326	96.899	98.593	-2.3253					72	32	3	0	0	0	0.18193	1	8892	8892		79.451	5.4763	1	196220			54284	5090	44851	44887	59184	59184					0.01534694334247888
SMTLAIHEI	9	Unmodified	_SMTLAIHEI_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	507.76806	1013.52157	-0.61271	-0.00031111	-0.0056892	-2.8888E-06	-0.6184	-0.000314	507.768177813438	98.278	1.5305	97.385	96.974	98.504	-0.89305	-0.082132	-1.7199E-05	NaN	157.21	48	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213050			54285	5090	44851	44887							0.01534694334247888
SMTLAIHEI	9	Unmodified	_SMTLAIHEI_					0	0	0		ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	ENSG00000143753|ENST00000323699|DEGS1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	507.76806	1013.52157	-0.63466	-0.00032226	0.48182	0.00024465	-0.15284	-7.7607E-05	507.76842615177486	99.084	1.5706	97.399	97.009	98.579	-1.685	-0.068917	0.00047789	NaN	157.21	62	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197140			54286	5090	44851	44887							0.01534694334247888
SMTSLAQKI	9	Unmodified	_SMTSLAQKI_					0	0	0		nc|ENSG00000172869|Q9Y485|DMXL1;ENSG00000172869|ENST00000539542|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-MSMS	OvCa99_classI_Rep5	1	489.7696228027344	2	489.76806	977.521567	1.7123	0.00083862	-0.19891	-9.7421E-05	1.5134	0.0007412	489.7677650692452	77.96	0.9115	77.96	77.714	78.625	0					39	21	2	0	0	0	0.03923	1	7877	7877		127.46	31.271	1	1503700			54287	7324	44852	44888	59185	59185					0.03190694334261934
SMVEDITGLRL	11	Unmodified	_SMVEDITGLRL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OvCa99_classI_Rep5	1	617.3319091796875	2	617.329013	1232.64347	1.5895	0.00098123	-0.052967	-3.2698E-05	1.5365	0.00094853	617.329073254256	126.78	0.68159	126.78	126.37	127.05	0					26	14	3	0	0	0	0.46188	1	14658	14658		56.632	27.462	1	262910			54288	1949	44853	44889	59186	59186					0.03645691625956715
SMVKTIYVP	9	Unmodified	_SMVKTIYVP_					0	0	0			REV__ENST00000506216.5_1_4:5749932-5890196:-|nuORF	REV__ENST00000506216.5_1_4:5749932-5890196:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	519.2901611328125	2	519.288628	1036.5627	-1.3696	-0.00071121	4.4091	0.0022896	3.0395	0.0015784	519.2908185700109	27.266	0.44918	27.266	27.092	27.542	0					13	8	2	0	0	0	0.40667	1	791	791		51.335	3.4199	1	310490	+		54289	26885	44854	44890	59187	59187					0.045884553737323586
SMVKYAVIKA	10	Unmodified	_SMVKYAVIKA_					0	0	0			REV__tr|A0A553SM08|A0A553SM08_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_21670PE=4SV=1	REV__tr|A0A553SM08|A0A553SM08_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_21670PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.3267211914062	2	555.323002	1108.63145	1.7364	0.00096424	2.6162	0.0014529	4.3526	0.0024171	555.3243692772734	85.535	1.5268	82.888	82.411	83.937	-2.6463					80	30	4	0	0	0	0.70152	1	7220	7220		30.318	4.7437	1	734270	+		54290	30285	44855	44891	59188	59188					0.0814811967343303
SMVLLILII	9	Unmodified	_SMVLLILII_					0	0	0		tr|A0A7D6VN53|A0A7D6VN53_9CLOTMagnesiumtransporterCorAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16260PE=4SV=1	tr|A0A7D6VN53|A0A7D6VN53_9CLOTMagnesiumtransporterCorAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16260PE=4SV=1	tr|A0A7D6VN53|A0A7D6VN53_9CLOTMagnesiumtransporterCorAfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16260PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.3029479980469	2	507.835214	1013.65588	-0.90988	-0.00046207	3.726	0.0018922	2.8161	0.0014301	507.8374158358309	82.306	0.63518	79.623	79.441	80.076	-2.6829					17	12	2	0	0	0	0.027462	1	6794	6794		40.573	10.731	1	26015			54291	34679	44856	44892	59189	59189					0.14959379826984787
SMWCSFFLCV	10	Unmodified	_SMWCSFFLCV_					0	0	0			REV__L1MEd_dup7667|chr6:8012359-8012802:+|1.0229559823049363|0.4417392873998776|1.21|429.0|32|3|anti-sense	REV__L1MEd_dup7667|chr6:8012359-8012802:+|1.0229559823049363|0.4417392873998776|1.21|429.0|32|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	611.7606201171875	2	611.758323	1221.50209	2.8507	0.0017439	-1.2377	-0.00075717	1.613	0.00098674	611.7574111785548	123.55	1.0326	122.52	122.2	123.24	-1.0377					32	19	2	0	0	0	0.58282	1	9534	9534		44.117	1.7207	1	55340	+		54292	28444	44857	44893	59190	59190					-0.09979721272520692
SMWCSFFLCV	10	Unmodified	_SMWCSFFLCV_					0	0	0			REV__L1MEd_dup7667|chr6:8012359-8012802:+|1.0229559823049363|0.4417392873998776|1.21|429.0|32|3|anti-sense	REV__L1MEd_dup7667|chr6:8012359-8012802:+|1.0229559823049363|0.4417392873998776|1.21|429.0|32|3|anti-sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	611.758323	1221.50209	-0.5471	-0.00033469	2.3604	0.001444	1.8133	0.0011093	611.7595974990693	122.92	1.1336	122.71	122.46	123.6	-0.21803	0.13291	0.0017256	NaN	44.117	41	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45363	+		54293	28444	44857	44893							-0.09979721272520692
SMWRKEVS	8	Unmodified	_SMWRKEVS_					0	0	0		ENST00000398645.6_1_11:67024848-67025070:+|nuORF	ENST00000398645.6_1_11:67024848-67025070:+|nuORF	ENST00000398645.6_1_11:67024848-67025070:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.80950927734375	2	511.758027	1021.5015	2.1314	0.0010907	0.64252	0.00032881	2.7739	0.0014196	511.75765531808213	74.934	0.36665	74.934	74.761	75.128	0					15	8	2	0	0	0	0.028476	1	7460	7460		12.959	0	1	193390			54294	11373	44858	44894	59191	59191					-0.008390566056846183
SNALPVGLP	9	Unmodified	_SNALPVGLP_					0	0	0		ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF	ENSG00000113721|ENST00000261799|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.2389831542969	2	434.25036	866.486168	-0.35679	-0.00015494	-2.5125	-0.001091	-2.8693	-0.001246	434.24916692044746	54.764	0.77016	51.516	51.336	52.106	-3.2474					18	14	2	0	0	0	0.027462	1	3433	3433		39.253	3.6345	1	28007			54295	2990	44859	44895	59192	59192					0.04758399868762808
SNAYIEVQI	9	Unmodified	_SNAYIEVQI_					0	0	0			REV__nc|ENSG00000168778|Q96GX1-2|TCTN2	REV__nc|ENSG00000168778|Q96GX1-2|TCTN2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.3047485351562	2	518.769114	1035.52368	-1.2925	-0.00067052	2.5453	0.0013204	1.2528	0.00064991	518.7703573503072	65.947	0.72723	62.462	62.082	62.81	-3.4854					22	14	2	0	0	0	0.027462	1	4805	4805		17.468	7.7624	1	88322	+		54296	21402	44860	44896	59193	59193					0.007334463437246086
SNDGYTKVE	9	Unmodified	_SNDGYTKVE_					0	0	0			REV__ENSG00000147596|ENST00000276594|PRDM14	REV__ENSG00000147596|ENST00000276594|PRDM14	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.83111572265625	2	506.732729	1011.4509	-0.29496	-0.00014946	1.2787	0.00064796	0.98374	0.00049849	506.73319566533013	66.788	0.541	63.298	63.148	63.689	-3.4902					16	10	2	0	0	0	0.027462	1	4883	4883		40.058	10.909	1	15902	+		54297	20073	44861	44897	59194	59194					-0.0543630744971324
SNDKKLYGN	9	Unmodified	_SNDKKLYGN_					0	0	0		tr|A0A7D6VS42|A0A7D6VS42_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09435PE=4SV=1	tr|A0A7D6VS42|A0A7D6VS42_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09435PE=4SV=1	tr|A0A7D6VS42|A0A7D6VS42_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09435PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.7760009765625	2	519.764363	1037.51417	-0.53144	-0.00027622	-0.25265	-0.00013132	-0.7841	-0.00040754	519.7642006125731	69.06	1.3228	65.569	64.965	66.288	-3.4902					38	26	2	0	0	0	0.027462	1	5218	5218		34.173	0	1	52289			54298	34984	44862	44898	59195	59195					-0.0030832194179311045
SNDLLFLLV	9	Unmodified	_SNDLLFLLV_					0	0	0			REV__ENST00000555284.1_1_14:81736911-81745120:-|nuORF	REV__ENST00000555284.1_1_14:81736911-81745120:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.2841796875	2	517.30005	1032.58555	-0.80479	-0.00041632	-2.0744	-0.0010731	-2.8792	-0.0014894	517.2987418545894	59.086	0.8781	59.086	58.655	59.533	0					46	22	3	0	0	0	0.027462	1	5011	5011		3.41	0	1	1443400	+		54299	27540	44863	44899	59196	59196					0.07055797762859584
SNDNAKKPLF	10	Unmodified	_SNDNAKKPLF_					0	0	0			REV__ENST00000368895.2_1_10:124641150-124648192:+|nuORF	REV__ENST00000368895.2_1_10:124641150-124648192:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	567.8077392578125	2	567.301113	1132.58767	2.2092	0.0012533	4.1952	0.00238	6.4044	0.0036332	567.303120202588	102.14	1.9943	102.14	101.73	103.73	0					104	44	5	0	0	0	0.26424	1	11405	11405		85.161	0.2453	1	6665200	+		54300	24927	44864	44900	59197	59197					0.026682265006456873
SNDRLVAVL	9	Unmodified	_SNDRLVAVL_					0	0	0		tr|A0A553SLQ1|A0A553SLQ1_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_21030PE=4SV=1	tr|A0A553SLQ1|A0A553SLQ1_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_21030PE=4SV=1	tr|A0A553SLQ1|A0A553SLQ1_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_21030PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.7860107421875	2	493.785099	985.555644	0.40814	0.00020153	3.2843	0.0016217	3.6924	0.0018233	493.786533625888	123	1.5868	121.63	121.36	122.94	-1.3666					76	31	4	0	0	0	0.1804	1	11624	11624		79.713	13.909	1	252900			54301	33751	44865	44901	59198	59198					0.062288588175078985
SNEKDPGEL	9	Unmodified	_SNEKDPGEL_					0	0	0		SVIL|p.N1692D|1|0.06|ENSG00000197321|chr10:29481610-29481610|T/C|missense_variant	SVIL|p.N1692D|1|0.06|ENSG00000197321|chr10:29481610-29481610|T/C|missense_variant	SVIL|p.N1692D|1|0.06|ENSG00000197321|chr10:29481610-29481610|T/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.3020324707031	2	494.732729	987.450904	-1.9823	-0.00098071	0.13905	6.8794E-05	-1.8433	-0.00091192	494.7327337860582	126.67	0.49222	125.26	124.92	125.41	-1.4143					14	9	2	0	0	0	0.027418	1	12070	12070		71.877	16.373	1	29415			54302	32935	44866	44902	59199	59199					-0.04332307449703876
SNEKDPGEL	9	Unmodified	_SNEKDPGEL_					0	0	0		SVIL|p.N1692D|1|0.06|ENSG00000197321|chr10:29481610-29481610|T/C|missense_variant	SVIL|p.N1692D|1|0.06|ENSG00000197321|chr10:29481610-29481610|T/C|missense_variant	SVIL|p.N1692D|1|0.06|ENSG00000197321|chr10:29481610-29481610|T/C|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	494.732729	987.450904	0.88164	0.00043618	-2.4067	-0.0011907	-1.5251	-0.00075452	494.73129811911974	125.65	0.44587	125.41	125.16	125.6	-0.2359	0.10146	-0.00055585	NaN	71.877	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18774			54303	32935	44866	44902							-0.04332307449703876
SNEKMSEEE	9	Unmodified	_SNEKMSEEE_					0	0	0			REV__ENSG00000082516|ENST00000285873|GEMIN5	REV__ENSG00000082516|ENST00000285873|GEMIN5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.781005859375	2	541.718961	1081.42337	-1.0443	-0.00056572	-3.8377	-0.0020789	-4.882	-0.0026447	541.7175973348128	103.52	0.25874	101.41	101.17	101.43	-2.1192					5	4	2	0	0	0	0.027462	1	9338	9338		35.618	16.258	1	8369.3	+		54304	17088	44867	44903	59200	59200					-0.11408578772238798
SNEKRQLLQ	9	Unmodified	_SNEKRQLLQ_					0	0	0			REV__L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|134|3|sense	REV__L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|134|3|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	558.3115844726562	2	558.312012	1114.60947	-0.055173	-3.0804E-05	-0.30238	-0.00016882	-0.35755	-0.00019963	558.3117652054095	24.361	0.34826	24.361	24.237	24.586	0					15	6	3	0	0	0	0.42676	1	442	442		49.442	1.7842	1	119240	+		54305	28566	44868	44904	59201	59201					0.05675031249234053
SNEMNHLD	8	Unmodified	_SNEMNHLD_					0	0	0		tr|A0A553SRF6|A0A553SRF6_NIACIGlycosidehydrolasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_00975PE=3SV=1	tr|A0A553SRF6|A0A553SRF6_NIACIGlycosidehydrolasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_00975PE=3SV=1	tr|A0A553SRF6|A0A553SRF6_NIACIGlycosidehydrolasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_00975PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2760314941406	2	480.197999	958.381445	2.8072	0.001348	0.5258	0.00025249	3.333	0.0016005	480.198178793413	86.498	0.36794	86.498	86.311	86.679	0					13	8	2	0	0	0	0.028476	1	9116	9116		54.776	0	1	273960			54306	34259	44869	44905	59202	59202					-0.09941089670121528
SNFGHTVATP	10	Unmodified	_SNFGHTVATP_					0	0	0			REV__ENSG00000163328|ENST00000392552|GPR155	REV__ENSG00000163328|ENST00000392552|GPR155	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.751220703125	2	515.751256	1029.48796	3.5778	0.0018453	-2.9939	-0.0015441	0.58397	0.00030118	515.7496284830565	132.62	1.8654	131.12	130.75	132.61	-1.5014					104	37	5	0	0	0	0.62299	1	12819	12819		39.253	0.44669	1	443820	+		54307	20827	44870	44906	59203	59203					-0.025605911132970505
SNFKKEVASL	10	Unmodified	_SNFKKEVASL_					0	0	0			REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	560.81640625	2	561.811313	1121.60807	1.6222	0.00091139	-3.4722	-0.0019507	-1.8499	-0.0010393	561.8092586054923	115.19	0.64762	113.8	113.62	114.27	-1.3977					20	12	2	0	0	0	0.027147	1	10703	10703		21.96	0	1	30274	+		54308	19513	44871	44907	59204	59204					0.05213397160491695
SNFKKEVASL	10	Unmodified	_SNFKKEVASL_					0	0	0			REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	561.811313	1121.60807	0.59577	0.00033471	-1.7971	-0.0010096	-1.2013	-0.00067492	561.8103536455586	113.95	0.44344	113.84	113.76	114.21	-0.11777	0.019979	0.001234	NaN	15.642	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40997	+		54309	19513	44871	44907							0.05213397160491695
SNFLAWLGY	9	Unmodified	_SNFLAWLGY_					0	0	0		ENSG00000179097|ENST00000319595|HTR1F	ENSG00000179097|ENST00000319595|HTR1F	ENSG00000179097|ENST00000319595|HTR1F	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.8211059570312	2	535.768917	1069.52328	0.1186	6.3545E-05	-0.78574	-0.00042098	-0.66714	-0.00035743	535.768426132717	57.229	1.2796	57.229	56.538	57.818	0					41	29	2	0	0	0	0.027462	1	4805	4805		19.36	0	1	178270			54310	7802	44872	44908	59205	59205					-0.00869928585461821
SNFPKKLQS	9	Unmodified	_SNFPKKLQS_					0	0	0		nc|ENSG00000041515|Q9Y6X6-3|MYO16;nc|ENSG00000041515|Q9Y6X6-4|MYO16;nc|ENSG00000041515|Q9Y6X6-2|MYO16;nc|ENSG00000041515|Q9Y6X6|MYO16;ENSG00000041515|ENST00000457511|MYO16;ENST00000375857.6_1_13:109445985-109707944:+|nuORF	nc|ENSG00000041515|Q9Y6X6-3|MYO16	nc|ENSG00000041515|Q9Y6X6-3|MYO16	MULTI-SECPEP	OvCa9_classI_Rep3	3	524.7727661132812	2	524.792924	1047.57129	-1.0564	-0.00055441	-1.4048	-0.00073724	-2.4613	-0.0012917	524.7917841522395	100.35	0.57959	98.748	98.565	99.144	-1.6053					15	11	2	0	0	0	0.027462	1	6799	6799		19.997	5.8596	1	42287			54311	14870	44873	44909	59206	59206					0.049411453345555856
SNFSNSLSD	9	Unmodified	_SNFSNSLSD_					0	0	0		ENSG00000166845|ENST00000620105|C18orf54	ENSG00000166845|ENST00000620105|C18orf54	ENSG00000166845|ENST00000620105|C18orf54	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.2671203613281	2	485.709254	969.403954	-1.2803	-0.00062187	4.2074	0.0020436	2.9271	0.0014217	485.71129006781814	72.553	0.38805	69.156	69.009	69.397	-3.3961					12	7	2	0	0	0	0.027459	1	5575	5575		52.937	10.462	1	29374			54312	6720	44874	44910	59207	59207					-0.08197167000844274
SNFSVCLTV	9	Unmodified	_SNFSVCLTV_					0	0	0			REV__MER51E_dup213|chr19:56234920-56237271:+|1.2535105915377431|0.3253014843551329|1.95|426.0|76|3|sense	REV__MER51E_dup213|chr19:56234920-56237271:+|1.2535105915377431|0.3253014843551329|1.95|426.0|76|3|sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	484.7748107910156	2	485.239135	968.463718	-1.4506	-0.00070389	0.4971	0.00024121	-0.95349	-0.00046267	485.2387960054072	92.103	0.80331	90.079	89.332	90.135	-2.0241					20	15	2	0	0	0	0.027462	1	5812	5812		27.882	0	1	27159	+		54313	28655	44875	44911	59208	59208					-0.021775675911726466
SNFVAENEA	9	Unmodified	_SNFVAENEA_					0	0	0			REV__tr|A0A553SMH8|A0A553SMH8_NIACIAlpha-glucosidase/alpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_22510PE=3SV=1	REV__tr|A0A553SMH8|A0A553SMH8_NIACIAlpha-glucosidase/alpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_22510PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.2464294433594	2	490.719621	979.42469	-0.21715	-0.00010656	-1.6054	-0.0007878	-1.8225	-0.00089436	490.7185625310061	63.092	0.28982	59.617	59.433	59.723	-3.475					8	5	2	0	0	0	0.027462	1	4402	4402		28.081	5.039	1	8416.4	+		54314	30331	44876	44912	59209	59209					-0.06584576621185079
SNFVERDL	8	Unmodified	_SNFVERDL_					0	0	0			REV__tr|A0A7D6VQP7|A0A7D6VQP7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22055PE=4SV=1	REV__tr|A0A7D6VQP7|A0A7D6VQP7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22055PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	490.2459411621094	2	490.245806	978.47706	1.878	0.00092068	1.2721	0.00062363	3.1501	0.0015443	490.2463049951319	55.9	1.2338	52.729	52.308	53.542	-3.1715					65	43	2	0	0	0	0.75723	1	1532	1532		23.042	0	1	17701	+		54315	31344	44877	44913	59210	59210					-0.013039934875678227
SNGAVDAIGLA	11	Unmodified	_SNGAVDAIGLA_					0	0	0		ENSG00000137860|ENST00000347644|SLC28A2	ENSG00000137860|ENST00000347644|SLC28A2	ENSG00000137860|ENST00000347644|SLC28A2	MULTI-SECPEP	OvCa9_classI_Rep2	2	494.76641845703125	2	494.258914	986.503274	0.35951	0.00017769	0.88305	0.00043645	1.2426	0.00061415	494.2592110755943	70.177	1.0011	67.606	67.165	68.166	-2.5707					26	19	2	0	0	0	0.025638	1	5659	5659		17.468	1.8262	1	56819			54316	4631	44878	44914	59211	59211					0.009482756839020112
SNGKNGFLS	9	Unmodified	_SNGKNGFLS_					0	0	0			REV__ENSG00000175535|ENST00000369221|PNLIP	REV__ENSG00000175535|ENST00000369221|PNLIP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.2636413574219	2	462.232699	922.450845	-2.6449	-0.0012226	1.9511	0.00090185	-0.69383	-0.00032071	462.2336964320326	49.674	0.51913	46.532	46.352	46.871	-3.1416					14	9	2	0	0	0	0.027462	1	2801	2801		35.618	0	1	14071	+		54317	21903	44879	44915	59212	59212					-0.013482626590416658
SNGLIAIK	8	Unmodified	_SNGLIAIK_					0	0	0		nc|ENSG00000053900|Q9UJX5-3|ANAPC4;ENSG00000053900|ENST00000315368|ANAPC4;ENST00000504256.5_1_4:25416106-25417163:+|nuORF	nc|ENSG00000053900|Q9UJX5-3|ANAPC4	nc|ENSG00000053900|Q9UJX5-3|ANAPC4	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.5455017089844	2	408.252903	814.491253	0.91105	0.00037194	-0.26185	-0.0001069	0.6492	0.00026504	408.2526973704756	52.334	0.43967	52.334	52.17	52.61	0					21	9	3	0	0	0	0.028476	1	4085	4085		42.396	0	1	312570			54318	1202	44880	44916	59213	59213					0.07658703731374317
SNGPPLFV	8	Unmodified	_SNGPPLFV_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4|ABCA13	REV__nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MSMS	OvCa9_classI_Rep2	2	415.7215576171875	2	415.723978	829.433404	-1.0163	-0.00042249	-3.9124	-0.0016265	-4.9287	-0.002049	415.72221629127785	119.3	1.3301	119.13	118.81	120.14	-0.17138					54	26	3	0	0	0	0.7549	1	11460	11460		24.203	2.2429	1	206540	+		54319	22143	44881	44917	59214	59214					0.01186441805953109
SNGRPALHA	9	Unmodified	_SNGRPALHA_					0	0	0		nc|ENSG00000114268|Q16877-2|PFKFB4;ENSG00000114268|ENST00000232375|PFKFB4;ENST00000490115.5_1_3:48586091-48594264:-|nuORF	nc|ENSG00000114268|Q16877-2|PFKFB4	nc|ENSG00000114268|Q16877-2|PFKFB4	MULTI-MSMS	OvCa9_classI_Rep2	2	461.7445983886719	2	461.746308	921.478063	-0.88756	-0.00040983	-2.2188	-0.0010245	-3.1064	-0.0014344	461.7451389147258	116.15	1.4848	116.04	115.64	117.12	-0.11777					63	29	3	0	0	0	0.48324	1	11088	11088		44.117	1.6423	1	230030			54320	14970	44882	44918	59215	59215					0.014182656719867737
SNGSWTWFFI	10	Unmodified	_SNGSWTWFFI_					0	0	0			REV__ENST00000406175.3_1_2:42513330-42557344:+|nuORF	REV__ENST00000406175.3_1_2:42513330-42557344:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	415.5306091308594	3	415.529346	1243.56621	-0.059316	-2.4648E-05	2.5036	0.0010403	2.4443	0.0010157	415.53041678602114	37.508	0.81931	37.508	37.205	38.024	0					53	17	5	0	0	0	0.6898	1	2074	2074		31.634	0.56612	1	3063100	+		54321	19875	44883	44919	59216	59216					-0.04583158528066633
SNIDKSLYV	9	Unmodified	_SNIDKSLYV_					0	0	0		ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	OvCa9_classI_Rep2	2	519.7752075195312	2	519.776939	1037.53933	0.3054	0.00015874	-0.82518	-0.00042891	-0.51978	-0.00027017	519.7763750292708	78.706	1.6834	76.967	75.934	77.617	-1.7398					91	32	4	0	0	0	0.11322	3	6592	6587;6592;6598		93.598	38.821	1	354420			54322	2770	44884	44920	59217;59218;59219	59218					0.022057328607616
SNIDKSLYV	9	Unmodified	_SNIDKSLYV_					0	0	0		ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	OvCa9_classI_Rep3	3	519.7781982421875	2	519.776939	1037.53933	0.070914	3.6859E-05	-0.46043	-0.00023932	-0.38952	-0.00020246	519.7765996630457	78.731	1.7003	76.378	75.85	77.551	-2.3527					73	33	4	0	0	0	0.046778	6	4202	4195;4202;4207;4213;4219;4227		120.87	46.613	1	1191100			54323	2770	44884	44920	59220;59221;59222;59223;59224;59225	59221					0.022057328607616
SNIDKSLYV	9	Unmodified	_SNIDKSLYV_					0	0	0		ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.7784423828125	2	519.776939	1037.53933	-0.69427	-0.00036086	-0.10855	-5.6419E-05	-0.80281	-0.00041728	519.7768362055175	79.494	1.6887	76.743	76.322	78.011	-2.7514					71	28	4	0	0	0	0.066102	4	6443	6443;6451;6464;6477		109.48	43.675	1	1405900			54324	2770	44884	44920	59226;59227;59228;59229	59226					0.022057328607616
SNIDLIKVKVE	11	Unmodified	_SNIDLIKVKVE_					0	0	0			REV__tr|A0A7D6VND8|A0A7D6VND8_9CLOT30SribosomalproteinS1OS=ClostridiumintestinaleOX=36845GN=rpsAPE=4SV=1	REV__tr|A0A7D6VND8|A0A7D6VND8_9CLOT30SribosomalproteinS1OS=ClostridiumintestinaleOX=36845GN=rpsAPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	419.1981506347656	3	419.918611	1256.734	-0.64813	-0.00027216	1.3029	0.00054712	0.65479	0.00027496	419.91898108090277	49.518	0.59375	46.757	46.523	47.116	-2.7603					23	11	3	0	0	0	0.025624	1	3177	3177		25.892	0	1	24104	+		54325	31175	44885	44921	59230	59230					0.11590483945883534
SNIDNLISI	9	Unmodified	_SNIDNLISI_					0	0	0			REV__tr|A0A7D6VSY7|A0A7D6VSY7_9CLOTIS110familytransposaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05865PE=4SV=1	REV__tr|A0A7D6VSY7|A0A7D6VSY7_9CLOTIS110familytransposaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05865PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.79510498046875	2	494.769114	987.523675	0.37818	0.00018711	0.045594	2.2559E-05	0.42378	0.00020967	494.7696279495981	59.801	0.78603	56.409	56.1	56.886	-3.392					27	15	3	0	0	0	0.027462	1	4013	4013		34.173	0	1	48060	+		54326	31555	44886	44922	59231	59231					0.029414463437205995
SNIDNLISI	9	Unmodified	_SNIDNLISI_					0	0	0			REV__tr|A0A7D6VSY7|A0A7D6VSY7_9CLOTIS110familytransposaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05865PE=4SV=1	REV__tr|A0A7D6VSY7|A0A7D6VSY7_9CLOTIS110familytransposaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05865PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	494.769114	987.523675	-0.28274	-0.00013989	1.305	0.00064568	1.0223	0.00050579	494.7700212490134	56.527	0.23971	56.527	56.422	56.662	0	0.058802	0.00076201	NaN	19.997	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	170250	+		54327	31555	44886	44922							0.029414463437205995
SNIKLNINDLV	11	Unmodified	_SNIKLNINDLV_					0	0	0			REV__tr|A0A7D6VTT5|A0A7D6VTT5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03870PE=4SV=1	REV__tr|A0A7D6VTT5|A0A7D6VTT5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03870PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	414.9059143066406	3	414.906594	1241.69795	-1.8177	-0.00075419	-0.43755	-0.00018154	-2.2553	-0.00093573	414.9064020831429	36.035	0.88996	33.325	33.102	33.992	-2.7097					37	17	3	0	0	0	0.72069	1	1507	1507		22.562	0	1	88921	+		54328	31628	44887	44923	59232	59232					0.08677026769032636
SNIQFIGYDTS	11	Unmodified	_SNIQFIGYDTS_					0	0	0			REV__ENSG00000090382|ENST00000261267|LYZ	REV__ENSG00000090382|ENST00000261267|LYZ	MULTI-MSMS	OvCa99_classI_Rep5	1	415.5304260253906	3	415.531304	1243.57208	-0.059316	-2.4648E-05	-2.2078	-0.00091742	-2.2671	-0.00094207	415.53041678602114	37.508	0.81931	37.508	37.205	38.024	0					53	17	5	0	0	0	0.66539	1	2051	2051		38.714	6.68	1	3063100	+		54329	17222	44888	44924	59233	59233					-0.039961048070381366
SNLADSSGQGR	11	Unmodified	_SNLADSSGQGR_					0	0	0		nc|ENSG00000231690|Q9H8X3|LINC00574;ENST00000420557.2_1_6:170201029-170201413:+|nuORF	nc|ENSG00000231690|Q9H8X3|LINC00574	nc|ENSG00000231690|Q9H8X3|LINC00574	MULTI-SECPEP	OvCa9_classI_Rep2	2	545.829345703125	2	546.257434	1090.50031	-0.47829	-0.00026127	-2.7412	-0.0014974	-3.2195	-0.0017587	546.2557324975184	94.427	1.9362	93.328	92.906	94.842	-1.0995					93	38	5	0	0	0	0.025656	1	8637	8637		32.751	0	1	187890			54330	11673	44889	44925	59234	59234					-0.041315994408932966
SNLDYIFMPTK	11	Unmodified	_SNLDYIFMPTK_					0	0	0			REV__ENSG00000122735|ENST00000242317|DNAI1	REV__ENSG00000122735|ENST00000242317|DNAI1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	443.2743225097656	3	443.556684	1327.64822	-0.81333	-0.00036076	3.4043	0.00151	2.591	0.0011492	443.55809609936335	69.881	0.68272	66.4	66.153	66.836	-3.4812					19	13	2	0	0	0	0.026068	1	5229	5229		16.53	0	1	41941	+		54331	18612	44890	44926	59235	59235					-0.002494242312877759
SNLEKQQKKL	10	Unmodified	_SNLEKQQKKL_					0	0	0			REV__nc|ENSG00000101333|Q15147-2|PLCB4	REV__nc|ENSG00000101333|Q15147-2|PLCB4	MULTI-MSMS	OvCa9_classI_Rep4_	4	608.3573608398438	2	608.356419	1214.69829	-0.22565	-0.00013728	0.83372	0.0005072	0.60807	0.00036992	608.3580836409832	127.66	1.0289	126.23	125.89	126.92	-1.4357					47	19	3	0	0	0	0.5635	1	12188	12188		46.457	1.4346	1	75033	+		54332	17490	44891	44927	59236	59236					0.0995244648888729
SNLEKQQKKL	10	Unmodified	_SNLEKQQKKL_					0	0	0			REV__nc|ENSG00000101333|Q15147-2|PLCB4	REV__nc|ENSG00000101333|Q15147-2|PLCB4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	608.356419	1214.69829	0.28109	0.000171	2.7277	0.0016594	3.0088	0.0018304	608.3578607523773	126.32	0.78766	126.09	125.8	126.59	-0.2359	-0.13832	0.0013877	NaN	46.457	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61137	+		54333	17490	44891	44927							0.0995244648888729
SNLEKQQKKL	10	Unmodified	_SNLEKQQKKL_					0	0	0			REV__nc|ENSG00000101333|Q15147-2|PLCB4	REV__nc|ENSG00000101333|Q15147-2|PLCB4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	608.356419	1214.69829	2.7076	0.0016472	0.5949	0.00036191	3.3025	0.0020091	608.3565821517387	127.44	0.9743	126.37	126.07	127.05	-1.0715	0.1387	-0.0012072	NaN	46.457	29	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45914	+		54334	17490	44891	44927							0.0995244648888729
SNLEKQQKKL	10	Unmodified	_SNLEKQQKKL_					0	0	0			REV__nc|ENSG00000101333|Q15147-2|PLCB4	REV__nc|ENSG00000101333|Q15147-2|PLCB4	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	608.356419	1214.69829	-0.22565	-0.00013728	0.83372	0.0005072	0.60807	0.00036992	608.3580836409832	127.66	1.0289	126.23	125.89	126.92	-1.4357	-0.0003769	-0.00091667	NaN	46.457	47	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75033	+		54335	17490	44891	44927							0.0995244648888729
SNLGDTLLATL	11	Unmodified	_SNLGDTLLATL_					0	0	0			REV__tr|A0A553SRX7|A0A553SRX7_NIACIPTSfructosetransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_01895PE=4SV=1	REV__tr|A0A553SRX7|A0A553SRX7_NIACIPTSfructosetransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_01895PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	560.270751953125	2	559.308603	1116.60265	-0.12373	-6.9204E-05	-4.4322	-0.002479	-4.556	-0.0025482	559.3067101421929	115.64	1.0382	115.52	115.14	116.18	-0.11777					35	20	3	0	0	0	0.025814	1	11035	11035		20.837	1.7336	1	15190	+		54336	30775	44892	44928	59237	59237					0.04901673578001464
SNLGDTLLATL	11	Unmodified	_SNLGDTLLATL_					0	0	0			REV__tr|A0A553SRX7|A0A553SRX7_NIACIPTSfructosetransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_01895PE=4SV=1	REV__tr|A0A553SRX7|A0A553SRX7_NIACIPTSfructosetransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_01895PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	559.308603	1116.60265	-1.0691	-0.00059798	-1.7283	-0.00096664	-2.7974	-0.0015646	559.3075465117234	116.76	0.6923	115.71	115.24	115.93	-1.0414	0.084685	0.0011193	NaN	27.047	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15014	+		54337	30775	44892	44928							0.04901673578001464
SNLIRSLLV	9	Unmodified	_SNLIRSLLV_					0	0	0		ENSG00000125124|ENST00000245157|BBS2	ENSG00000125124|ENST00000245157|BBS2	ENSG00000125124|ENST00000245157|BBS2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.765625	2	507.818941	1013.62333	-0.42709	-0.00021688	-0.3678	-0.00018678	-0.79489	-0.00040366	507.818665106554	63.82	1.7888	60.345	59.868	61.657	-3.475					86	36	4	0	0	0	0.027462	1	4475	4475		22.58	0	1	415620			54338	3692	44893	44929	59238	59238					0.11706308748341598
SNLKLFKS	8	Unmodified	_SNLKLFKS_					0	0	0			REV__ENSG00000102595|ENST00000376747|UGGT2	REV__ENSG00000102595|ENST00000376747|UGGT2	MULTI-SECPEP	OvCa9_classI_Rep2	2	469.2532958984375	2	468.779285	935.544017	-1.5934	-0.00074694	1.8075	0.00084734	0.21416	0.0001004	468.77964707880204	85.28	1.3866	83.789	83.357	84.743	-1.4906					57	27	3	0	0	0	0.028476	1	7455	7455		51.335	7.2187	1	42165	+		54339	17565	44894	44930	59239	59239					0.07366661794185347
SNLRGECTP	9	Unmodified	_SNLRGECTP_					0	0	0		ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.7802429199219	2	488.729466	975.444379	-0.67912	-0.00033191	0.90913	0.00044432	0.23	0.00011241	488.7297911564158	73.641	0.43508	70.245	70.076	70.511	-3.3961					14	8	2	0	0	0	0.027462	1	5726	5726		40.778	0	1	24429			54340	4115	44895	44931	59240	59240					-0.044325238820761115
SNLSLVDICF	10	Unmodified	_SNLSLVDICF_					0	0	0		OR1F1|p.F68L|1|0.04|ENSG00000168124|chr16:3204448-3204448|T/C|missense_variant	OR1F1|p.F68L|1|0.04|ENSG00000168124|chr16:3204448-3204448|T/C|missense_variant	OR1F1|p.F68L|1|0.04|ENSG00000168124|chr16:3204448-3204448|T/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.8291015625	2	555.778625	1109.5427	-0.029434	-1.6359E-05	-2.1406	-0.0011897	-2.17	-0.001206	555.7775901848303	60.322	0.36494	60.322	60.153	60.518	0					11	8	2	0	0	0	0.026891	1	5258	5258		39.253	15.05	1	296270			54341	15452	44896	44932	59241	59241					-0.007693403568964641
SNMPNSQFF	9	Unmodified	_SNMPNSQFF_					0	0	0			REV__ENSG00000178951|ENST00000322357|ZBTB7A	REV__ENSG00000178951|ENST00000322357|ZBTB7A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.2478637695312	2	536.231842	1070.44913	-0.67573	-0.00036235	-4.0697	-0.0021823	-4.7455	-0.0025447	536.2293828561296	112.36	0.31	110.85	110.74	111.05	-1.5111					6	5	2	0	0	0	0.027462	1	10368	10368		31.53	19.323	1	6789.4	+		54342	22090	44897	44933	59242	59242					-0.08327639739309234
SNNKYLLE	8	Unmodified	_SNNKYLLE_					0	0	0		tr|A0A7D6ZFU8|A0A7D6ZFU8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16545PE=4SV=1	tr|A0A7D6ZFU8|A0A7D6ZFU8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16545PE=4SV=1	tr|A0A7D6ZFU8|A0A7D6ZFU8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16545PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	490.277099609375	2	490.756007	979.497461	-1.4268	-0.0007002	1.9404	0.00095226	0.51361	0.00025206	490.7570137439803	86.08	0.60091	83.86	83.636	84.237	-2.2204					13	11	2	0	0	0	0.028476	1	5099	5099		57.811	2.3071	1	26974			54343	35525	44898	44934	59243	59243					0.006891771722280282
SNNPHSPIV	9	Unmodified	_SNNPHSPIV_					0	0	0		ENSG00000182326|ENST00000360817|C1S	ENSG00000182326|ENST00000360817|C1S	ENSG00000182326|ENST00000360817|C1S	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.7470397949219	2	482.745973	963.477394	-1.0271	-0.00049583	0.92976	0.00044884	-0.09735	-4.6995E-05	482.7462795513795	53.944	1.3307	50.696	50.364	51.695	-3.2474					67	25	4	0	0	0	0.012051	3	3320	3310;3320;3333		162.25	71.883	1	630730			54344	7994	44899	44935	59244;59245;59246	59245					-0.005805737677178513
SNNPHSPIV	9	Unmodified	_SNNPHSPIV_					0	0	0		ENSG00000182326|ENST00000360817|C1S	ENSG00000182326|ENST00000360817|C1S	ENSG00000182326|ENST00000360817|C1S	MULTI-MATCH	OvCa9_classI_Rep2	2		2	482.745973	963.477394	-1.3193	-0.00063689	1.1199	0.00054062	-0.19942	-9.6268E-05	482.74636277564554	53.771	1.0946	50.957	50.628	51.722	-2.8139	0.13034	0.00010131	NaN	162.25	49	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104710			54345	7994	44899	44935							-0.005805737677178513
SNNPIVSVVL	10	Unmodified	_SNNPIVSVVL_					0	0	0			REV__ENSG00000178966|ENST00000445877|RMI1	REV__ENSG00000178966|ENST00000445877|RMI1	MULTI-MSMS	OvCa99_classI_Rep5	1	521.3031616210938	2	521.300581	1040.58661	1.9172	0.00099946	1.0907	0.0005686	3.008	0.0015681	521.3005369669428	99.51	0.90781	99.51	99.076	99.984	0					42	21	3	0	0	0	0.50999	1	11022	11022		52.937	1.744	1	2576600	+		54346	22091	44900	44936	59247	59247					0.06794012131740601
SNNRLNVKL	9	Unmodified	_SNNRLNVKL_					0	0	0			REV__ENST00000513432.5_1_18:13059017-13124766:+|nuORF	REV__ENST00000513432.5_1_18:13059017-13124766:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.8078002929688	2	529.309272	1056.60399	-2.1061	-0.0011148	4.4023	0.0023302	2.2962	0.0012154	529.3114145971126	119.58	0.8875	119.41	119.2	120.09	-0.17137					27	17	3	0	0	0	0.027459	1	11584	11584		44.377	5.1244	1	30592	+		54347	17510	44901	44937	59248	59248					0.07795352457424087
SNNRLNVKL	9	Unmodified	_SNNRLNVKL_					0	0	0			REV__ENST00000513432.5_1_18:13059017-13124766:+|nuORF	REV__ENST00000513432.5_1_18:13059017-13124766:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	529.309272	1056.60399	-1.741	-0.00092153	4.3326	0.0022933	2.5916	0.0013718	529.3115060831857	120.56	0.57001	119.22	118.93	119.5	-1.3444	-0.074531	0.00067496	NaN	44.377	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63424	+		54348	17510	44901	44937							0.07795352457424087
SNPFKGKIK	9	Unmodified	_SNPFKGKIK_					0	0	0		tr|A0A553SIE1|A0A553SIE1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_14660PE=4SV=1	tr|A0A553SIE1|A0A553SIE1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_14660PE=4SV=1	tr|A0A553SIE1|A0A553SIE1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_14660PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.7783508300781	2	509.805834	1017.59712	-1.4069	-0.00071726	0.46665	0.0002379	-0.94027	-0.00047935	509.805979234636	72.265	1.3611	68.808	68.46	69.821	-3.4563					58	27	3	0	0	0	0.027461	1	5626	5626		49.442	13.823	1	293820			54349	33371	44902	44938	59249	59249					0.08902039576855714
SNPFKGKIK	9	Unmodified	_SNPFKGKIK_					0	0	0		tr|A0A553SIE1|A0A553SIE1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_14660PE=4SV=1	tr|A0A553SIE1|A0A553SIE1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_14660PE=4SV=1	tr|A0A553SIE1|A0A553SIE1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_14660PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	509.805834	1017.59712	0.39702	0.0002024	-0.72019	-0.00036716	-0.32317	-0.00016476	509.8054140091369	71.069	1.4629	68.554	68.12	69.583	-2.5145	-0.066292	-0.00039013	NaN	49.442	63	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299030			54350	33371	44902	44938							0.08902039576855714
SNPSTQLD	8	Unmodified	_SNPSTQLD_					0	0	0		tr|A0A553SI89|A0A553SI89_NIACIM23familymetallopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_14420PE=4SV=1	tr|A0A553SI89|A0A553SI89_NIACIM23familymetallopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_14420PE=4SV=1	tr|A0A553SI89|A0A553SI89_NIACIM23familymetallopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_14420PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	430.2730712890625	2	431.201064	860.387576	0.57051	0.000246	-2.8167	-0.0012146	-2.2462	-0.00096855	431.1998054712429	108.4	0.81367	107.21	106.9	107.72	-1.1978					19	15	2	0	0	0	0.028476	1	7736	7736		25.574	4.6271	1	25195			54351	33356	44903	44939	59250	59250					-0.04820248166947749
SNPSVPVAV	9	Unmodified	_SNPSVPVAV_					0	0	0		ENSG00000135723|ENST00000258201|FHOD1	ENSG00000135723|ENST00000258201|FHOD1	ENSG00000135723|ENST00000258201|FHOD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.7809753417969	2	435.239993	868.465432	0.39589	0.00017231	-0.52271	-0.00022751	-0.12683	-5.5201E-05	435.23962106693835	58.193	0.55462	54.848	54.444	54.999	-3.3449					16	10	2	0	0	0	0.027462	1	3784	3784		29.15	3.6994	1	27194			54352	4408	44904	44940	59251	59251					0.025938094890989305
SNQDLIINL	9	Unmodified	_SNQDLIINL_					0	0	0		ENSG00000159915|ENST00000683810|ZNF233	ENSG00000159915|ENST00000683810|ZNF233	ENSG00000159915|ENST00000683810|ZNF233	MSMS	OvCa9_classI_Rep2	2	515.282470703125	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.33	1	105.89	105.39	106.39	-0.43642								0	0	0	0.026252	1	9898	9898		104.75	0	1				54353	6033	44905	44941	59252	59252					0.03709135235044414
SNQLLGRKV	9	Unmodified	_SNQLLGRKV_					0	0	0		ENST00000578001.1_1_17:27182052-27185217:+|nuORF;nc|ENSG00000132591|O75616-2|ERAL1;ENSG00000132591|ENST00000254928|ERAL1	ENST00000578001.1_1_17:27182052-27185217:+|nuORF	ENST00000578001.1_1_17:27182052-27185217:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.77471923828125	2	507.806365	1013.59818	-0.44754	-0.00022727	4.0331	0.002048	3.5855	0.0018207	507.8067874787524	55.279	0.3337	55.279	55.107	55.44	0					12	7	2	0	0	0	0.027462	1	4499	4499		30.318	0	1	160500			54354	4150	44906	44942	59253	59253					0.0919225394576415
SNQLSYLF	8	Unmodified	_SNQLSYLF_					0	0	0			REV__chr7:102640414-102666077|180|14.52|0.67|4.43|-|2|TE_info:MSTA,MSTA_dup8666,ERVL-MaLR,LTR,donor,-,102666077,102666381|UPK3BL1,None|3	REV__chr7:102640414-102666077|180|14.52|0.67|4.43|-|2|TE_info:MSTA,MSTA_dup8666,ERVL-MaLR,LTR,donor,-,102666077,102666381|UPK3BL1,None|3	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.7660217285156	2	486.245275	970.475997	-0.33311	-0.00016198	0.40596	0.0001974	0.072847	3.5422E-05	486.24511575019926	68.558	0.54395	68.558	68.356	68.9	0					15	12	2	0	0	0	0.028476	1	6492	6492		25.45	0	1	654490	+		54355	16089	44907	44943	59254	59254					-0.010422078564715775
SNQMQIAAI	9	Unmodified	_SNQMQIAAI_					0	0	0			REV__ENSG00000108239|ENST00000225235|TBC1D12	REV__ENSG00000108239|ENST00000225235|TBC1D12	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.7809753417969	2	488.250034	974.485516	-0.4063	-0.00019838	-3.6148	-0.0017649	-4.0211	-0.0019633	488.24828601954255	73.988	1.243	70.757	70.483	71.726	-3.2308					45	25	3	0	0	0	0.027433	1	5777	5777		51.335	7.2187	1	82638	+		54356	17877	44908	44944	59255	59255					-0.0027476284260501416
SNQTVGQQI	9	Unmodified	_SNQTVGQQI_					0	0	0		ENSG00000176542|ENST00000316407|USF3	ENSG00000176542|ENST00000316407|USF3	ENSG00000176542|ENST00000316407|USF3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.780029296875	2	487.748713	973.482873	-0.89333	-0.00043572	3.7556	0.0018318	2.8623	0.0013961	487.7511854586157	73.313	0.62917	69.917	69.736	70.366	-3.3961					13	12	2	0	0	0	0.027461	1	5714	5714		49.442	5.3247	1	41224			54357	7613	44909	44945	59256	59256					-0.0049289497588915765
SNRKPIVLV	9	Unmodified	_SNRKPIVLV_					0	0	0			REV__ENSG00000165164|ENST00000378653|CFAP47	REV__ENSG00000165164|ENST00000378653|CFAP47	MULTI-MSMS	OvCa9_classI_Rep2	2	513.8255615234375	2	513.326934	1024.63931	-0.72981	-0.00037463	-1.1237	-0.00057681	-1.8535	-0.00095145	513.3270041871727	67.528	2.3815	64.867	64.644	67.025	-2.661					66	47	2	0	0	0	0.42676	1	5269	5269		49.442	7.0454	1	1844100	+		54358	21063	44910	44946	59257	59257					0.12798014985219197
SNRVCFFL	8	Unmodified	_SNRVCFFL_					0	0	0			REV__nc|ENSG00000204544|Q5SSG8-3|MUC21	REV__nc|ENSG00000204544|Q5SSG8-3|MUC21	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.782470703125	2	493.249837	984.485122	-0.78772	-0.00038854	3.074	0.0015162	2.2862	0.0011277	493.2512410691842	127.52	0.60261	126.08	125.79	126.39	-1.4357					17	11	2	0	0	0	0.028476	1	12182	12182		30.504	1.3541	1	14687	+		54359	23166	44911	44947	59258	59258					-0.007741377717934483
SNRVCFFL	8	Unmodified	_SNRVCFFL_					0	0	0			REV__nc|ENSG00000204544|Q5SSG8-3|MUC21	REV__nc|ENSG00000204544|Q5SSG8-3|MUC21	MULTI-MATCH	OvCa9_classI_Rep2	2		2	493.249837	984.485122	1.2537	0.00061839	1.5359	0.0007576	2.7896	0.001376	493.2503553933982	126.5	0.39304	126.27	126.1	126.49	-0.2359	0.106	-0.00058784	NaN	30.504	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26026	+		54360	23166	44911	44947							-0.007741377717934483
SNRVCFFL	8	Unmodified	_SNRVCFFL_					0	0	0			REV__nc|ENSG00000204544|Q5SSG8-3|MUC21	REV__nc|ENSG00000204544|Q5SSG8-3|MUC21	MULTI-MATCH	OvCa9_classI_Rep3	3		2	493.249837	984.485122	0.91891	0.00045325	1.5862	0.00078241	2.5051	0.0012357	493.25054191121734	127.21	0.41316	126.14	125.91	126.33	-1.0715	-0.024416	-0.00053822	NaN	30.504	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21786	+		54361	23166	44911	44947							-0.007741377717934483
SNTILGSIIV	10	Unmodified	_SNTILGSIIV_					0	0	0			REV__tr|A0A7D7ABC9|A0A7D7ABC9_9CLOTPutativesporulationproteinYtxCOS=ClostridiumintestinaleOX=36845GN=ytxCPE=4SV=1	REV__tr|A0A7D7ABC9|A0A7D7ABC9_9CLOTPutativesporulationproteinYtxCOS=ClostridiumintestinaleOX=36845GN=ytxCPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.28021240234375	2	508.802957	1015.59136	-1.5884	-0.00080816	2.5582	0.0013016	0.96987	0.00049347	508.80410984408195	34.1	0.69192	31.39	31.218	31.91	-2.7097					22	13	2	0	0	0	0.027028	1	1291	1291		18.262	6.0552	1	60733	+		54362	32676	44912	44948	59259	59259					0.08418896274531562
SNTIMLLEL	9	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))SNTIM(Oxidation (M))LLEL_		SNTIM(1)LLEL		SNTIM(110)LLEL	1	0	1			REV__ENST00000368761.9_1_6:111927363-111927393:-|nuORF	REV__ENST00000368761.9_1_6:111927363-111927393:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.2858276367188	2	546.286282	1090.55801	1.3848	0.00075652	-1.6997	-0.00092854	-0.31489	-0.00017202	546.2851800228589	138.1	1.1958	136.57	136.29	137.49	-1.5284					49	26	2	0	0	0	0.062324	1	13433	13433		111.65	12.273	1	170140	+		54363	24926	44913	44949	59260	59260		565			0.01635526440304602
SNVELSIQP	9	Unmodified	_SNVELSIQP_					0	0	0			REV__COL16A1|p.Q400Rfs*61|1|0.11|ENSG00000084636|chr1:31692063-31692063|T/-|frameshift_variant	REV__COL16A1|p.Q400Rfs*61|1|0.11|ENSG00000084636|chr1:31692063-31692063|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.3055419921875	2	493.761289	985.508025	-0.92535	-0.0004569	-3.968	-0.0019592	-4.8933	-0.0024161	493.75919645043234	100.55	0.72597	98.285	97.926	98.652	-2.2665					27	13	3	0	0	0	0.027462	1	8992	8992		31.53	1.0262	1	35243	+		54364	16161	44914	44950	59261	59261					0.014691598266836081
SNVIATPLIS	10	Unmodified	_SNVIATPLIS_					0	0	0			REV__nc|ENSG00000169946|Q8WW38-2|ZFPM2	REV__nc|ENSG00000169946|Q8WW38-2|ZFPM2	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.28021240234375	2	507.795132	1013.57571	-1.6125	-0.0008188	-1.1971	-0.00060789	-2.8096	-0.0014267	507.7944906052925	34.1	0.44393	31.39	31.168	31.612	-2.7097					11	8	2	0	0	0	0.026891	1	1291	1291		24.519	5.4157	1	13630	+		54365	28998	44915	44951	59262	59262					0.06946609757483202
SNVKLKKPSQH	11	Unmodified	_SNVKLKKPSQH_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3689575195312	2	633.369861	1264.72517	-4.5141	-0.0028591	3.4388	0.002178	-1.0753	-0.00068108	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.70142	3	15661	15493;15661;15719		29.17	4.4192	1	369460	+		54366	20257	44916	44952	59263;59264;59265	59264					0.10339555100085818
SNVKLKKPSQH	11	Unmodified	_SNVKLKKPSQH_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.3673706054688	2	633.369861	1264.72517	-2.6571	-0.001683	1.5103	0.00095658	-1.1468	-0.00072637	633.3706685096566	150.42	2.9234	148.98	147.78	150.7	-1.4344					195	63	4	0	0	0	0.72466	1	14971	14971		20.03	0.033703	1	147740	+		54367	20257	44916	44952	59266	59266					0.10339555100085818
SNVKLKKPSQH	11	Unmodified	_SNVKLKKPSQH_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.3695068359375	2	633.369861	1264.72517	-3.7067	-0.0023477	2.7994	0.0017731	-0.90726	-0.00057463	633.3714685413702	153.42	3.7144	151.96	150.68	154.4	-1.4516					273	94	4	0	0	0	0.70142	1	15198	15198		29.17	7.4843	1	395790	+		54368	20257	44916	44952	59267	59267					0.10339555100085818
SNVKLKKPSQH	11	Unmodified	_SNVKLKKPSQH_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MSMS	OvCa9_classI_Rep4_	4	633.377197265625	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	155.12	1	153.63	153.13	154.13	-1.4911								0	0	0	0.19474	1	15360	15360		24.519	0.99649	1		+		54369	20257	44916	44952	59268	59268					0.10339555100085818
SNVSASGHASI	11	Unmodified	_SNVSASGHASI_					0	0	0			REV__CEP170|p.T1218I|1|0.28|ENSG00000143702|chr1:243164307-243164307|G/A|missense_variant	REV__CEP170|p.T1218I|1|0.28|ENSG00000143702|chr1:243164307-243164307|G/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7463989257812	2	515.25162	1028.48869	-0.34782	-0.00017922	4.1874	0.0021575	3.8395	0.0019783	515.2534730895989	96.185	0.76279	93.759	93.559	94.322	-2.4256					26	14	3	0	0	0	0.025714	1	8536	8536		38.754	18.272	1	96468	+		54370	15778	44917	44953	59269	59269					-0.024417964642225343
SNVSASGHASI	11	Unmodified	_SNVSASGHASI_					0	0	0			REV__CEP170|p.T1218I|1|0.28|ENSG00000143702|chr1:243164307-243164307|G/A|missense_variant	REV__CEP170|p.T1218I|1|0.28|ENSG00000143702|chr1:243164307-243164307|G/A|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.25162	1028.48869	-0.24584	-0.00012667	3.6373	0.0018741	3.3915	0.0017475	515.2533477865456	94.761	0.78571	93.662	93.361	94.147	-1.0995	-0.024965	-0.00032735	NaN	31.634	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72618	+		54371	15778	44917	44953							-0.024417964642225343
SNWNWSVP	8	Unmodified	_SNWNWSVP_					0	0	0			REV__ENSG00000179163|ENST00000374479|FUCA1	REV__ENSG00000179163|ENST00000374479|FUCA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.75970458984375	2	495.227417	988.44028	-0.72062	-0.00035687	3.2653	0.0016171	2.5447	0.0012602	495.2287680960667	68.016	0.23576	68.016	67.842	68.077	0					8	5	2	0	0	0	0.028476	1	6383	6383		35.618	0	1	149330	+		54372	22107	44918	44954	59270	59270					-0.054402453134798634
SPAAGLPPSQ	10	Unmodified	_SPAAGLPPSQ_					0	0	0			REV__nc|ENSG00000231028|P0C7V0|AHI1-DT	REV__nc|ENSG00000231028|P0C7V0|AHI1-DT	MULTI-SECPEP	OvCa9_classI_Rep2	2	462.936767578125	2	462.742899	923.471246	-0.13026	-6.0275E-05	0.32037	0.00014825	0.19012	8.7975E-05	462.7426563916031	45.321	0.2989	42.611	42.398	42.697	-2.7097					7	5	2	0	0	0	0.02676	1	2644	2644		58.23	3.4536	1	14695	+		54373	29146	44919	44955	59271	59271					0.006449080007541852
SPAAIFYLTG	10	Unmodified	_SPAAIFYLTG_					0	0	0		tr|A0A7D6W020|A0A7D6W020_9CLOTAminopeptidasePfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21830PE=3SV=1	tr|A0A7D6W020|A0A7D6W020_9CLOTAminopeptidasePfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21830PE=3SV=1	tr|A0A7D6W020|A0A7D6W020_9CLOTAminopeptidasePfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21830PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3176879882812	2	520.276575	1038.5386	-0.50865	-0.00026464	-3.5877	-0.0018666	-4.0963	-0.0021312	520.2747642067907	58.782	0.65359	55.39	55.051	55.705	-3.392					20	12	2	0	0	0	0.027021	1	3856	3856		15.642	0	1	21918			54374	35369	44920	44956	59272	59272					0.020869382116870838
SPAALAPRNL	10	Unmodified	_SPAALAPRNL_					0	0	0		ENST00000493091.5_1_7:99954506-99954575:+|nuORF	ENST00000493091.5_1_7:99954506-99954575:+|nuORF	ENST00000493091.5_1_7:99954506-99954575:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.8091735839844	2	505.293091	1008.57163	-0.58263	-0.0002944	0.019858	1.0034E-05	-0.56278	-0.00028437	505.29298033092886	73.357	0.78642	70.957	70.636	71.422	-2.3999					17	14	2	0	0	0	0.026752	1	5935	5935		27.882	0	1	30530			54375	12733	44921	44957	59273	59273					0.06768565054414921
SPADFPELTK	10	Unmodified	_SPADFPELTK_					0	0	0		tr|A0A553SFD1|A0A553SFD1_NIACIPeptidaseTOS=NialliacirculansOX=1397GN=pepTPE=3SV=1	tr|A0A553SFD1|A0A553SFD1_NIACIPeptidaseTOS=NialliacirculansOX=1397GN=pepTPE=3SV=1	tr|A0A553SFD1|A0A553SFD1_NIACIPeptidaseTOS=NialliacirculansOX=1397GN=pepTPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	551.8330078125	2	552.782222	1103.54989	-0.17532	-9.6916E-05	-4.241	-0.0023444	-4.4164	-0.0024413	552.7798407110913	100.3	1.3389	99.465	99.063	100.4	-0.83051					56	26	3	0	0	0	0.026688	1	9166	9166		40.778	6.6056	1	106650			54376	33026	44922	44958	59274	59274					0.0022571551517103217
SPAEKAGLL	9	Unmodified	_SPAEKAGLL_					0	0	0		ENSG00000109062|ENST00000262613|NHERF1	ENSG00000109062|ENST00000262613|NHERF1	ENSG00000109062|ENST00000262613|NHERF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	443.2563781738281	2	443.255643	884.496732	-0.40543	-0.00017971	0.40536	0.00017968	-6.7301E-05	-2.9831E-08	443.2556823412682	66.561	1.1323	63.071	62.756	63.888	-3.4902					59	22	3	0	0	0	0.033166	2	4850	4841;4850		132.76	0	1	928270			54377	2692	44923	44959	59275;59276	59276					0.04986382523202337
SPAEKAGLL	9	Unmodified	_SPAEKAGLL_					0	0	0		ENSG00000109062|ENST00000262613|NHERF1	ENSG00000109062|ENST00000262613|NHERF1	ENSG00000109062|ENST00000262613|NHERF1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	443.255643	884.496732	2.7166	0.0012041	-2.3717	-0.0010513	0.34486	0.00015286	443.2544168325459	65.899	1.345	63.203	62.62	63.965	-2.6958	0.066141	-0.0015546	NaN	132.76	62	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	192460			54378	2692	44923	44959							0.04986382523202337
SPAELPIGVI	10	Unmodified	_SPAELPIGVI_					0	0	0		tr|A0A553SGV8|A0A553SGV8_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_11650PE=3SV=1	tr|A0A553SGV8|A0A553SGV8_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_11650PE=3SV=1	tr|A0A553SGV8|A0A553SGV8_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_11650PE=3SV=1	MSMS	OvCa99_classI_Rep5	1	498.29266357421875	2	498.292225	994.569897	NaN	NaN	NaN	NaN	NaN	NaN	NaN	114.52	1	114.52	114.02	115.02	0								0	0	0	0.14189	1	13073	13073		34.173	3.6689	1				54379	33202	44924	44960	59277	59277					0.07239511245813901
SPAFLLRLPL	10	Unmodified	_SPAFLLRLPL_					0	0	0		nc|ENSG00000203722|Q6H3X3-3|RAET1G;nc|ENSG00000203722|Q6H3X3-2|RAET1G;ENSG00000203722|ENST00000367360|RAET1G	nc|ENSG00000203722|Q6H3X3-3|RAET1G	nc|ENSG00000203722|Q6H3X3-3|RAET1G	MULTI-MSMS	OvCa9_classI_Rep3	3	563.8528442382812	2	563.852784	1125.69102	-2.8964	-0.0016331	2.8743	0.0016207	-0.022017	-1.2415E-05	563.8543800520843	142.83	1.1362	141.84	141.45	142.59	-0.9903					59	22	4	0	0	0	0.40664	1	11871	11871		67.494	1.0644	1	98602			54380	8926	44925	44961	59278	59278					0.13319758679131155
SPAFLLRLPL	10	Unmodified	_SPAFLLRLPL_					0	0	0		nc|ENSG00000203722|Q6H3X3-3|RAET1G;nc|ENSG00000203722|Q6H3X3-2|RAET1G;ENSG00000203722|ENST00000367360|RAET1G	nc|ENSG00000203722|Q6H3X3-3|RAET1G	nc|ENSG00000203722|Q6H3X3-3|RAET1G	MULTI-MATCH	OvCa9_classI_Rep2	2		2	563.852784	1125.69102	-1.2024	-0.000678	1.1805	0.00066565	-0.02191	-1.2354E-05	563.8535464922958	141.78	1.6328	141.56	140.68	142.31	-0.22696	-0.16433	9.3258E-06	NaN	67.494	40	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58079			54381	8926	44925	44961							0.13319758679131155
SPAFLLRLPL	10	Unmodified	_SPAFLLRLPL_					0	0	0		nc|ENSG00000203722|Q6H3X3-3|RAET1G;nc|ENSG00000203722|Q6H3X3-2|RAET1G;ENSG00000203722|ENST00000367360|RAET1G	nc|ENSG00000203722|Q6H3X3-3|RAET1G	nc|ENSG00000203722|Q6H3X3-3|RAET1G	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	563.852784	1125.69102	1.1361	0.00064058	-0.69779	-0.00039345	0.43829	0.00024713	563.8524143014146	143.21	1.1172	141.77	141.46	142.58	-1.4427	0.046251	-0.0021089	NaN	67.494	59	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154570			54382	8926	44925	44961							0.13319758679131155
SPAFSTRVL	9	Unmodified	_SPAFSTRVL_					0	0	0		ENSG00000197157|ENST00000354725|SND1;ZFR-SND1|1|fusion;ENST00000489417.5_1_7:127726971-127732107:+|nuORF	ENSG00000197157|ENST00000354725|SND1	ENSG00000197157|ENST00000354725|SND1	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.27557373046875	2	489.274367	976.53418	1.4914	0.00072969	-1.6295	-0.00079726	-0.13811	-6.7575E-05	489.273468538516	85.915	1.4308	83.268	82.8	84.231	-2.6463					50	28	2	0	0	0	0.14855	2	7250	7240;7250		85.161	22.992	1	696840			54383	8684	44926	44962	59279;59280	59280					0.044974737888196614
SPAGKTNAL	9	Unmodified	_SPAGKTNAL_					0	0	0		nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ;INADL-EIF3E|1|fusion	nc|ENSG00000132849|Q8NI35|PATJ;INADL-EIF3E|1|fusion	INADL-EIF3E|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	429.7378234863281	2	429.737617	857.460681	-0.1352	-5.8101E-05	0.4073	0.00017503	0.27209	0.00011693	429.73765555310104	40.68	1.2309	37.97	37.7	38.931	-2.7097					50	24	3	0	0	0	0.045281	2	2071	2071;2076		122.18	10.528	1	378750			54384	4180;14505	44927	44963	59281;59282	59281					0.026249253463333844
SPAGPRIPEP	10	Unmodified	_SPAGPRIPEP_					0	0	0		ENST00000545137.5_1_15:74486162-74488565:-|nuORF	ENST00000545137.5_1_15:74486162-74488565:-|nuORF	ENST00000545137.5_1_15:74486162-74488565:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.8386535644531	2	510.777274	1019.53999	-0.48496	-0.00024771	2.5949	0.0013254	2.1099	0.0010777	510.7785126409501	76.684	0.5638	73.745	73.459	74.023	-2.9389					19	11	2	0	0	0	0.026867	1	6073	6073		35.152	7.2698	1	41340			54385	13517	44928	44964	59283	59283					0.03100572300456861
SPAGSKLRL	9	Unmodified	_SPAGSKLRL_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5;LAMA5-C20orf151|1|fusion	ENSG00000130702|ENST00000252999|LAMA5;LAMA5-C20orf151|1|fusion	LAMA5-C20orf151|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	464.78240966796875	2	464.782359	927.550165	-1.2842	-0.0005969	1.0625	0.00049384	-0.22172	-0.00010305	464.7827463272865	52.22	0.842	49.407	49.046	49.888	-2.8129					46	16	3	0	0	0	0.12515	3	3473	3473;3479;3486		90.37	21.267	1	262710			54386	4000;14793	44929	44965	59284;59285;59286	59284					0.08349180025686564
SPAGSKLRL	9	Unmodified	_SPAGSKLRL_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5;LAMA5-C20orf151|1|fusion	ENSG00000130702|ENST00000252999|LAMA5;LAMA5-C20orf151|1|fusion	LAMA5-C20orf151|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	464.782958984375	2	464.782359	927.550165	-0.73466	-0.00034146	0.49645	0.00023074	-0.23822	-0.00011072	464.78252171693356	52.634	1.4106	49.426	49.094	50.505	-3.208					56	27	3	0	0	0	0.12515	1	3169	3169		90.37	16.395	1	665340			54387	4000;14793	44929	44965	59287	59287					0.08349180025686564
SPAGTSGRLEL	11	Unmodified	_SPAGTSGRLEL_					0	0	0		ENSG00000177354|ENST00000374144|C10orf71	ENSG00000177354|ENST00000374144|C10orf71	ENSG00000177354|ENST00000374144|C10orf71	MULTI-SECPEP	OvCa9_classI_Rep3	3	544.2998657226562	2	544.290745	1086.56694	-1.462	-0.00079574	0.62043	0.0003377	-0.84154	-0.00045804	544.2909241073814	93.096	0.4445	91.135	90.884	91.328	-1.9617					16	8	3	0	0	0	0.025009	1	5916	5916		78.264	1.4896	1	40745			54388	7673	44930	44966	59288	59288					0.027116361209891693
SPAHEVQI	8	Unmodified	_SPAHEVQI_					0	0	0			REV__ENST00000395811.9_1_17:17088208-17088493:+|nuORF	REV__ENST00000395811.9_1_17:17088208-17088493:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	441.24676513671875	2	440.729792	879.445031	-1.0347	-0.00045601	1.454	0.00064082	0.41933	0.00018481	440.7301193823237	55.414	1.0672	52.119	51.803	52.87	-3.2944					51	20	4	0	0	0	0.028476	1	3455	3455		35.201	9.7505	1	56745	+		54389	25321	44931	44967	59289	59289					0.00048638829287028784
SPAHEVQI	8	Unmodified	_SPAHEVQI_					0	0	0			REV__ENST00000395811.9_1_17:17088208-17088493:+|nuORF	REV__ENST00000395811.9_1_17:17088208-17088493:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	440.729792	879.445031	0.2022	8.9114E-05	0.33938	0.00014957	0.54157	0.00023869	440.7298633772168	55.211	0.8952	52.397	52.122	53.017	-2.8139	0.13871	-0.0006817	NaN	40.573	22	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15371	+		54390	25321	44931	44967							0.00048638829287028784
SPAIFLYLISI	11	Unmodified	_SPAIFLYLISI_					0	0	0		nc|ENSG00000196932|Q6ZUK4-2|TMEM26;ENSG00000196932|ENST00000399298|TMEM26	nc|ENSG00000196932|Q6ZUK4-2|TMEM26	nc|ENSG00000196932|Q6ZUK4-2|TMEM26	MULTI-SECPEP	OvCa9_classI_Rep4_	4	412.9276123046875	3	412.912797	1235.71656	-0.52787	-0.00021796	-2.8735	-0.0011865	-3.4014	-0.0014045	413.24602614636456	55.228	0.8664	51.933	51.546	52.412	-3.2944					19	16	2	0	0	0	0.025268	1	3461	3461		34.087	9.8547	1	23908			54391	8660	44932	44968	59290	59290					0.1081318841090706
SPAKNKTTA	9	Unmodified	_SPAKNKTTA_					0	0	0		ENST00000330843.8_1_8:37730107-37730260:-|nuORF	ENST00000330843.8_1_8:37730107-37730260:-|nuORF	ENST00000330843.8_1_8:37730107-37730260:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	459.25531005859375	2	459.256174	916.497795	-0.12634	-5.8024E-05	-0.37824	-0.00017371	-0.50458	-0.00023173	459.25582723409684	47.255	0.98959	44.545	44.242	45.231	-2.7097					48	19	3	0	0	0	0.46356	1	2868	2868		45.972	5.3996	1	216050			54392	10439	44933	44969	59291	59291					0.03620596892085359
SPAKNKTTA	9	Unmodified	_SPAKNKTTA_					0	0	0		ENST00000330843.8_1_8:37730107-37730260:-|nuORF	ENST00000330843.8_1_8:37730107-37730260:-|nuORF	ENST00000330843.8_1_8:37730107-37730260:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	459.2565612792969	2	459.256174	916.497795	-0.14326	-6.5794E-05	-0.61921	-0.00028438	-0.76248	-0.00035017	459.25583040570086	47.417	1.3179	44.311	44.032	45.35	-3.1055					78	25	4	0	0	0	0.091859	1	2558	2558		99.375	0.74558	1	1474600			54393	10439	44933	44969	59292	59292					0.03620596892085359
SPAKNPSSL	9	Unmodified	_SPAKNPSSL_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.7431640625	2	450.742899	899.471246	-0.42725	-0.00019258	0.37858	0.00017064	-0.048673	-2.1939E-05	450.7430070494346	43.572	0.61472	40.564	40.326	40.94	-3.0074					32	11	4	0	0	0	0.07097	1	2104	2104		106.68	43.377	1	403860			54394	1827	44934	44970	59293	59293					0.017489080007635494
SPAKNPSSL	9	Unmodified	_SPAKNPSSL_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MATCH	OvCa9_classI_Rep2	2		2	450.742899	899.471246	2.9084	0.0013109	-2.7176	-0.001225	0.19072	8.5964E-05	450.74153685192033	43.484	0.64478	40.774	40.559	41.203	-2.7097	0.10492	-0.0013763	NaN	106.68	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103410			54395	1827	44934	44970							0.017489080007635494
SPALKRLDL	9	Unmodified	_SPALKRLDL_					0	0	0		ENSG00000166685|ENST00000299886|COG1	ENSG00000166685|ENST00000299886|COG1	ENSG00000166685|ENST00000299886|COG1	MULTI-MSMS	OvCa9_classI_Rep2	2	506.8115539550781	2	506.811116	1011.60768	-0.19535	-9.9005E-05	-0.46138	-0.00023383	-0.65673	-0.00033284	506.81088140623655	72.437	2.0408	69.929	69.537	71.578	-2.5071					74	38	2	0	0	0	0.07097	1	5860	5860		106.68	13.488	1	1427900			54396	6701	44935	44971	59294	59294					0.10234022231270501
SPALKRLDL	9	Unmodified	_SPALKRLDL_					0	0	0		ENSG00000166685|ENST00000299886|COG1	ENSG00000166685|ENST00000299886|COG1	ENSG00000166685|ENST00000299886|COG1	MULTI-MSMS	OvCa9_classI_Rep3	3	506.81158447265625	2	506.811116	1011.60768	-0.44114	-0.00022357	0.073781	3.7393E-05	-0.36736	-0.00018618	506.8111165678339	72.595	2.3799	69.993	69.521	71.901	-2.6023					124	47	4	0	0	0	0.033166	2	3469	3469;3488		132.76	14.015	1	1583400			54397	6701	44935	44971	59295;59296	59295					0.10234022231270501
SPALKRLDL	9	Unmodified	_SPALKRLDL_					0	0	0		ENSG00000166685|ENST00000299886|COG1	ENSG00000166685|ENST00000299886|COG1	ENSG00000166685|ENST00000299886|COG1	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.8141784667969	2	506.811116	1011.60768	-1.0201	-0.00051702	-0.14225	-7.2094E-05	-1.1624	-0.00058911	506.81103376209654	73.738	1.9166	70.341	69.93	71.847	-3.3961					71	39	2	0	0	0	0.10502	1	5721	5721		95.815	8.0609	1	1698900			54398	6701	44935	44971	59297	59297					0.10234022231270501
SPALKTTRL	9	Unmodified	_SPALKTTRL_					0	0	0		ENST00000502249.6_1_4:119435248-119475252:+|nuORF;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	493.803466796875	2	493.803291	985.59203	-0.80916	-0.00039957	0.51207	0.00025286	-0.29709	-0.0001467	493.80344392967834	51.587	1.8784	48.774	48.403	50.281	-2.8129					57	37	2	0	0	0	0.12515	5	3395	3395;3400;3408;3415;3421		90.37	15.094	1	403330			54399	5086	44936	44972	59298;59299;59300;59301;59302	59298					0.09865735714208768
SPALKTTRL	9	Unmodified	_SPALKTTRL_					0	0	0		ENST00000502249.6_1_4:119435248-119475252:+|nuORF;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	493.8035888671875	2	493.803291	985.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.954	1	48.781	48.281	49.281	-3.1734								0	0	0	0.028623	1	3081	3081		90.37	5.0103	1				54400	5086	44936	44972	59303	59303					0.09865735714208768
SPALKTTRL	9	Unmodified	_SPALKTTRL_					0	0	0		ENST00000502249.6_1_4:119435248-119475252:+|nuORF;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	493.80340576171875	2	493.803291	985.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.04	1	48.856	48.356	49.356	-3.1841								0	0	0	0.022462	1	3091	3091		95.815	18.969	1				54401	5086	44936	44972	59304	59304					0.09865735714208768
SPALKTTRL	9	Unmodified	_SPALKTTRL_					0	0	0		ENST00000502249.6_1_4:119435248-119475252:+|nuORF;nc|ENSG00000143702|Q5SW79-3|CEP170;ENSG00000143702|ENST00000366542|CEP170	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	ENST00000502249.6_1_4:119435248-119475252:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	493.8039245605469	2	493.803291	985.59203	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.162	1	48.954	48.454	49.454	-3.208								0	0	0	0.11726	1	3106	3106		68.787	2.3575	1				54402	5086	44936	44972	59305	59305					0.09865735714208768
SPALLVREQ	9	Unmodified	_SPALLVREQ_					0	0	0		ENST00000396667.7_2_7:12254545-12258110:+|nuORF	ENST00000396667.7_2_7:12254545-12258110:+|nuORF	ENST00000396667.7_2_7:12254545-12258110:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.8128662109375	2	506.792924	1011.57129	-1.0941	-0.00055448	0.99684	0.00050519	-0.097255	-4.9288E-05	506.79331491880805	73.647	0.99963	70.251	70.027	71.027	-3.3961					42	20	3	0	0	0	0.027185	1	5732	5732		104.75	35.96	1	210470			54403	11323	44937	44973	59306	59306					0.06597145334569632
SPALMVLL	8	Unmodified	_SPALMVLL_					0	0	0		nc|ENSG00000187116|A6NI73-4|LILRA5;ENST00000489504.5_1_19:54822600-54824295:-|nuORF;nc|ENSG00000187116|A6NI73-3|LILRA5;nc|ENSG00000187116|A6NI73-2|LILRA5;ENSG00000187116|ENST00000432233|LILRA5	nc|ENSG00000187116|A6NI73-4|LILRA5	nc|ENSG00000187116|A6NI73-4|LILRA5	MULTI-SECPEP	OvCa99_classI_Rep5	1	421.71307373046875	2	422.254057	842.493561	0.26604	0.00011233	4.4295	0.0018704	4.6955	0.0019827	422.25582200169384	58.423	0.65754	58.423	58.194	58.852	0					24	15	3	0	0	0	0.028476	1	4952	4952		13.775	2.2643	1	913120			54404	8387	44938	44974	59307	59307					0.06601416144815175
SPANTRYLFL	10	Unmodified	_SPANTRYLFL_					0	0	0		nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB;nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA;ENST00000492351.6_1_4:102029270-102092253:-|nuORF	nc|ENSG00000107758|P16298-2|PPP3CB	nc|ENSG00000107758|P16298-2|PPP3CB	MULTI-MSMS	OvCa9_classI_Rep2	2	591.3193359375	2	591.319306	1180.62406	-0.70275	-0.00041555	0.40796	0.00024124	-0.29479	-0.00017431	591.3194023033263	105.71	1.3961	105.27	105	106.39	-0.43642					77	27	4	0	0	0	0.22073	3	9827	9827;9832;9841		91.265	22.781	1	654370			54405	2614	44939	44975	59308;59309;59310	59308					0.04097103397361934
SPANTRYLFL	10	Unmodified	_SPANTRYLFL_					0	0	0		nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB;nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA;ENST00000492351.6_1_4:102029270-102092253:-|nuORF	nc|ENSG00000107758|P16298-2|PPP3CB	nc|ENSG00000107758|P16298-2|PPP3CB	MULTI-MSMS	OvCa9_classI_Rep3	3	591.319580078125	2	591.319306	1180.62406	-0.17173	-0.00010155	-0.21873	-0.00012934	-0.39047	-0.00023089	591.319059362571	106.72	1.7217	105.45	105.11	106.83	-1.267					85	33	4	0	0	0	0.1266	2	7536	7536;7543		106.88	44.773	1	872590			54406	2614	44939	44975	59311;59312	59311					0.04097103397361934
SPANTRYLFL	10	Unmodified	_SPANTRYLFL_					0	0	0		nc|ENSG00000107758|P16298-2|PPP3CB;nc|ENSG00000107758|P16298-3|PPP3CB;ENSG00000107758|ENST00000360663|PPP3CB;nc|ENSG00000107758|P16298-4|PPP3CB;nc|ENSG00000138814|Q08209-5|PPP3CA;nc|ENSG00000138814|Q08209-3|PPP3CA;nc|ENSG00000138814|Q08209-2|PPP3CA;ENSG00000138814|ENST00000394854|PPP3CA;ENST00000492351.6_1_4:102029270-102092253:-|nuORF	nc|ENSG00000107758|P16298-2|PPP3CB	nc|ENSG00000107758|P16298-2|PPP3CB	MULTI-MSMS	OvCa9_classI_Rep4_	4	591.3191528320312	2	591.319306	1180.62406	-1.5337	-0.00090689	1.5406	0.00091098	0.0069197	4.0918E-06	591.3200102857162	107.28	1.4478	105.41	105.07	106.51	-1.8785					79	28	4	0	0	0	0.065922	3	9789	9779;9789;9803		123.21	56.779	1	754810			54407	2614	44939	44975	59313;59314;59315	59314					0.04097103397361934
SPAPTHNSL	9	Unmodified	_SPAPTHNSL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	OvCa9_classI_Rep2	2	462.9369201660156	2	462.232699	922.450845	-0.21715	-0.00010037	0.41452	0.0001916	0.19737	9.1232E-05	462.2326649848799	45.467	0.95021	42.757	42.547	43.497	-2.7097					36	18	3	0	0	0	0.027411	1	2658	2658		54.776	1.4249	1	93154			54408	7034	44940	44976	59316	59316					-0.013482626590644031
SPAPTHNSL	9	Unmodified	_SPAPTHNSL_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.23284912109375	2	462.232699	922.450845	-1.5509	-0.00071689	1.4977	0.00069228	-0.053244	-2.4611E-05	462.23328286888875	45.607	1.4078	42.569	42.23	43.637	-3.0385					70	26	4	0	0	0	0.049969	1	2341	2341		118.74	40.799	1	683490			54409	7034	44940	44976	59317	59317					-0.013482626590644031
SPARGDGSPI	10	Unmodified	_SPARGDGSPI_					0	0	0		ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.7444152832031	2	478.743431	955.472308	0.25162	0.00012046	-0.8163	-0.0003908	-0.56468	-0.00027034	478.7428902301346	48.021	1.6805	44.913	44.185	45.866	-3.1077					51	32	2	0	0	0	0.22663	1	2619	2619		90.37	7.6193	1	403960			54410	1091	44941	44977	59318	59318					-0.007208776303286868
SPARGDGSPI	10	Unmodified	_SPARGDGSPI_					0	0	0		ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	ENSG00000037637|ENST00000375592|FBXO42	MULTI-MATCH	OvCa9_classI_Rep2	2		2	478.743431	955.472308	-0.85076	-0.0004073	0.53701	0.00025709	-0.31375	-0.0001502	478.7435575680235	47.867	0.79366	45.157	44.885	45.679	-2.7097	0.12209	0.00044275	NaN	90.37	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	70084			54411	1091	44941	44977							-0.007208776303286868
SPATLPLALP	10	Unmodified	_SPATLPLALP_					0	0	0		ENSG00000275023|ENST00000621332|MLLT6	ENSG00000275023|ENST00000621332|MLLT6	ENSG00000275023|ENST00000621332|MLLT6	MULTI-SECPEP	OvCa9_classI_Rep2	2	490.7366027832031	2	490.294768	978.574983	0.38478	0.00018866	-0.96881	-0.000475	-0.58403	-0.00028635	490.2942631050467	78.172	0.65454	76.432	76.249	76.903	-1.7398					13	12	2	0	0	0	0.026871	1	6503	6503		37.159	9.2769	1	10952			54412	9565	44942	44978	59319	59319					0.08483815108411363
SPATLPLALP	10	Unmodified	_SPATLPLALP_					0	0	0		ENSG00000275023|ENST00000621332|MLLT6	ENSG00000275023|ENST00000621332|MLLT6	ENSG00000275023|ENST00000621332|MLLT6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	490.294768	978.574983	-0.62608	-0.00030696	-0.94535	-0.0004635	-1.5714	-0.00077046	490.2940547922011	78.63	0.40546	76.277	76.048	76.453	-2.3527	-0.077589	1.183E-05	NaN	37.159	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10136			54413	9565	44942	44978							0.08483815108411363
SPATWLQPA	9	Unmodified	_SPATWLQPA_					0	0	0		chr14:103121499-103123437|388|11.02|0.0|20.07|+|ENST00000333007|TNFAIP2,TNFAIP2;ENSG00000185215|ENST00000560869|TNFAIP2	chr14:103121499-103123437|388|11.02|0.0|20.07|+|ENST00000333007|TNFAIP2,TNFAIP2	chr14:103121499-103123437|388|11.02|0.0|20.07|+|ENST00000333007|TNFAIP2,TNFAIP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.3149719238281	2	485.753267	969.491981	-0.88492	-0.00042985	-3.4533	-0.0016775	-4.3382	-0.0021073	485.75147017643854	50.919	1.473	47.746	47.1	48.573	-3.1734					42	28	2	0	0	0	0.027455	1	2992	2992		42.396	3.59	1	217100			54414	339	44943	44979	59320	59320					0.0060149838041070325
SPAVERLISSL	11	Unmodified	_SPAVERLISSL_					0	0	0		ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2;nc|ENSG00000006744|Q9BQ52-3|ELAC2;ENST00000484122.5_1_17:12896137-12899859:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12896137-12899859:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	586.3386840820312	2	586.337695	1170.66084	-1.7478	-0.0010248	1.6389	0.00096097	-0.10885	-6.3821E-05	586.3385315943224	119.53	1.971	119.36	119.01	120.98	-0.17137					102	39	4	0	0	0	0.076604	5	11521	11494;11499;11505;11511;11521		102.06	38.528	1	240960			54415	891;12593	44944	44980	59321;59322;59323;59324;59325	59325					0.08233355223296712
SPAVERLISSL	11	Unmodified	_SPAVERLISSL_					0	0	0		ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2;nc|ENSG00000006744|Q9BQ52-3|ELAC2;ENST00000484122.5_1_17:12896137-12899859:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12896137-12899859:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	586.3366088867188	2	586.337695	1170.66084	-0.23945	-0.0001404	0.014787	8.6699E-06	-0.22466	-0.00013173	586.3375461958808	120.51	2.3583	119.48	119.07	121.43	-1.0271					97	45	4	0	0	0	0.059541	6	9175	9175;9181;9188;9199;9204;9211		109.83	33.1	1	289410			54416	891;12593	44944	44980	59326;59327;59328;59329;59330;59331	59326					0.08233355223296712
SPAVERLISSL	11	Unmodified	_SPAVERLISSL_					0	0	0		ENST00000480891.5_1_17:12896137-12909314:-|nuORF;nc|ENSG00000006744|Q9BQ52-4|ELAC2;ENSG00000006744|ENST00000338034|ELAC2;nc|ENSG00000006744|Q9BQ52-3|ELAC2;ENST00000484122.5_1_17:12896137-12899859:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF;ENST00000484122.5_1_17:12896137-12899859:-|nuORF	ENST00000480891.5_1_17:12896137-12909314:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.336669921875	2	586.337695	1170.66084	-1.1343	-0.0006651	1.0145	0.00059483	-0.11984	-7.0267E-05	586.3381793495855	120.78	1.9995	119.43	119.03	121.03	-1.3479					99	38	4	0	0	0	0.097603	6	11385	11352;11362;11374;11385;11397;11411		97.597	28.154	1	268020			54417	891;12593	44944	44980	59332;59333;59334;59335;59336;59337	59335					0.08233355223296712
SPAVLTHLLSL	11	Unmodified	_SPAVLTHLLSL_					0	0	0		ENST00000263401.9_1_11:36295935-36296034:-|nuORF	ENST00000263401.9_1_11:36295935-36296034:-|nuORF	ENST00000263401.9_1_11:36295935-36296034:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8435668945312	2	575.845156	1149.67576	-1.5734	-0.00090602	-1.7064	-0.00098265	-3.2798	-0.0018887	575.8439449675558	145.55	4.7888	144.12	142.78	147.57	-1.4357					360	93	6	0	0	0	0.71191	1	14451	14451		25.574	4.6271	1	565210			54418	9912	44945	44981	59338	59338					0.10690847091291289
SPAVSRTQL	9	Unmodified	_SPAVSRTQL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.7697448730469	2	479.769448	957.524344	-0.86944	-0.00041713	0.67737	0.00032498	-0.19206	-9.2147E-05	479.76970172163897	55.274	1.8279	51.98	51.597	53.425	-3.2944					72	35	3	0	0	0	0.084152	2	3483	3471;3483		101.46	21.747	1	851600			54419	7740	44946	44982	59339;59340	59340					0.04388285783431911
SPAVVEKWF	9	Unmodified	_SPAVVEKWF_					0	0	0		ENSG00000140534|ENST00000268138|TICRR;nc|ENSG00000140534|Q7Z2Z1-2|TICRR	ENSG00000140534|ENST00000268138|TICRR	ENSG00000140534|ENST00000268138|TICRR	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.7797241210938	2	531.784567	1061.55458	-0.8739	-0.00046473	-3.7911	-0.0020161	-4.665	-0.0024808	531.7824678459274	47.97	2.462	44.862	44.287	46.749	-3.1077					144	47	5	0	0	0	0.40667	1	2679	2679		51.335	1.8939	1	3227400			54420	4857	44947	44983	59341	59341					0.026266444486054752
SPCFNKYLL	9	Carbamidomethyl (C)	_SPC(Carbamidomethyl (C))FNKYLL_	SPC(1)FNKYLL		SPC(69)FNKYLL		0	1	0		ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	MULTI-MSMS	OvCa9_classI_Rep4_	4	571.2904052734375	2	571.289159	1140.56377	-0.069783	-3.9866E-05	-0.7137	-0.00040773	-0.78348	-0.0004476	571.2884173755593	121.99	0.72034	120.65	120.36	121.08	-1.3479					26	13	3	0	0	0	0.24951	1	11512	11512		68.787	20.871	1	91616			54421	1872	44948	44984	59342	59342	13				-0.0008933025735586853
SPCFNKYLL	9	Carbamidomethyl (C)	_SPC(Carbamidomethyl (C))FNKYLL_					0	1	0		ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	ENSG00000091536|ENST00000647165|MYO15A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	571.289159	1140.56377	-1.769	-0.0010106	1.6528	0.00094421	-0.11623	-6.6402E-05	571.2899813446847	120.71	0.59197	120.51	120.16	120.75	-0.19719	-0.087082	0.0016708	NaN	68.787	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60507			54422	1872	44948	44984			13				-0.0008933025735586853
SPDGKGSQE	9	Unmodified	_SPDGKGSQE_					0	0	0		ENSG00000183638|ENST00000382483|RP1L1	ENSG00000183638|ENST00000382483|RP1L1	ENSG00000183638|ENST00000382483|RP1L1	MULTI-MSMS	OvCa9_classI_Rep2	2	452.7043151855469	2	452.703971	903.393389	2.243	0.0010154	-1.5205	-0.00068832	0.72258	0.00032711	452.70324167027087	31.032	1.5294	28.322	28.15	29.679	-2.7097					67	30	4	0	0	0	0.51865	1	910	910		40.778	1.5253	1	376420			54423	8091	44949	44985	59343	59343					-0.06217149655276444
SPDGVHDSI	9	Unmodified	_SPDGVHDSI_					0	0	0			REV__ENSG00000027697|ENST00000367739|IFNGR1	REV__ENSG00000027697|ENST00000367739|IFNGR1	MULTI-MSMS	OvCa9_classI_Rep2	2	463.7127380371094	2	463.714339	925.414125	-4.8795	-0.0022627	3.1505	0.0014609	-1.729	-0.00080174	463.7156659367406	158.37	0.54906	158.15	157.93	158.48	-0.22696					26	14	2	0	0	0	0.6653	1	16089	16089		24.203	3.7209	1	28002	+		54424	16575	44950	44986	59344	59344					-0.0515655927562193
SPDKRQGDN	9	Unmodified	_SPDKRQGDN_					0	0	0			REV__ENSG00000136628|ENST00000366923|EPRS1	REV__ENSG00000136628|ENST00000366923|EPRS1	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.78326416015625	2	508.741419	1015.46829	-0.76606	-0.00038973	-3.7488	-0.0019072	-4.5149	-0.0022969	508.73965654723554	81.525	0.45459	79.202	78.854	79.308	-2.3226					12	8	2	0	0	0	0.027453	1	4527	4527		37.812	0	1	16124	+		54425	19395	44951	44987	59345	59345					-0.03882967124047809
SPDNIPKK	8	Unmodified	_SPDNIPKK_					0	0	0		ENSG00000204518|ENST00000376221|AADACL4	ENSG00000204518|ENST00000376221|AADACL4	ENSG00000204518|ENST00000376221|AADACL4	MULTI-MSMS	OvCa9_classI_Rep4_	4	449.7528991699219	2	449.753267	897.491981	-0.036515	-1.6423E-05	-0.71154	-0.00032002	-0.74805	-0.00033644	449.7529384751558	144.45	0.94861	143.02	142.73	143.68	-1.4357					31	17	2	0	0	0	0.7549	1	14157	14157		24.203	0	1	64299			54426	8995	44952	44988	59346	59346					0.03913498380427427
SPDPLCTVLM	10	Unmodified	_SPDPLCTVLM_					0	0	0			REV__AXIN2|p.K103Nfs*6|1|0.1|ENSG00000168646|chr17:65558315-65558315|C/-|frameshift_variant	REV__AXIN2|p.K103Nfs*6|1|0.1|ENSG00000168646|chr17:65558315-65558315|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.2792358398438	2	538.261753	1074.50895	1.2454	0.00067038	2.6118	0.0014059	3.8573	0.0020762	538.2632494973925	138.81	0.33435	138.81	138.64	138.98	0					8	6	2	0	0	0	0.027021	1	16197	16197		37.159	1.5408	1	75732	+		54427	15690	44953	44989	59347	59347					-0.02532085120310512
SPEFLWIWWLY	11	Unmodified	_SPEFLWIWWLY_					0	0	0		ENST00000508622.1_1_4:130017347-130021853:+|nuORF	ENST00000508622.1_1_4:130017347-130021853:+|nuORF	ENST00000508622.1_1_4:130017347-130021853:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.2902221679688	3	513.927218	1538.75982	-1.2193	-0.00062665	-3.1748	-0.0016316	-4.3941	-0.0022583	513.9257369333379	45.457	0.78292	42.418	42.23	43.013	-3.0385					27	14	3	0	0	0	0.026344	1	2335	2335		9.6461	0.43434	1	74250			54428	12947	44954	44990	59348	59348					0.011993781881983523
SPEILQAVG	9	Unmodified	_SPEILQAVG_					0	0	0		nc|ENSG00000104936|Q09013-12|DMPK;nc|ENSG00000104936|Q09013-10|DMPK;nc|ENSG00000104936|Q09013-2|DMPK;nc|ENSG00000104936|Q09013-8|DMPK;ENST00000596686.5_1_19:46273741-46282867:-|nuORF;nc|ENSG00000104936|Q09013-7|DMPK;nc|ENSG00000104936|Q09013-11|DMPK;nc|ENSG00000104936|Q09013-15|DMPK;ENSG00000104936|ENST00000291270|DMPK;nc|ENSG00000104936|Q09013-16|DMPK;nc|ENSG00000104936|Q09013-6|DMPK;nc|ENSG00000104936|Q09013-1|DMPK	nc|ENSG00000104936|Q09013-12|DMPK	nc|ENSG00000104936|Q09013-12|DMPK	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.7673645019531	2	457.2531	912.491647	0.89278	0.00040823	4.3897	0.0020072	5.2825	0.0024154	457.25493567435717	37.519	0.2495	34.627	34.541	34.791	-2.8925					5	4	2	0	0	0	0.027462	1	1399	1399		17.365	0	1	4080.1			54429	2408	44955	44991	59349	59349					0.031900786605774556
SPETAEGDGHH	11	Unmodified	_SPETAEGDGHH_					0	0	0		ENST00000471109.1_1_9:135978632-135979743:-|nuORF	ENST00000471109.1_1_9:135978632-135979743:-|nuORF	ENST00000471109.1_1_9:135978632-135979743:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.7899780273438	2	568.733791	1135.45303	1.6498	0.00093831	1.8344	0.0010433	3.4842	0.0019816	568.7348972821675	148.82	0.688	148.82	148.32	149.01	0					18	13	2	0	0	0	0.026007	1	17391	17391		18.262	0	1	17540			54430	12376	44956	44992	59350	59350					-0.10927878711891026
SPFFSPIHL	9	Unmodified	_SPFFSPIHL_					0	0	0		ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	MULTI-MSMS	OvCa9_classI_Rep2	2	522.7786865234375	2	522.779285	1043.54402	0.62719	0.00032788	-0.91087	-0.00047619	-0.28368	-0.0001483	522.7785887312914	124.27	1.1341	124.04	123.63	124.77	-0.23193					52	22	4	0	0	0	0.16524	1	12085	12085		82.305	5.4584	1	132650			54431	1979	44957	44993	59351	59351					0.023986617941773147
SPFFSPIHL	9	Unmodified	_SPFFSPIHL_					0	0	0		ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	MULTI-MSMS	OvCa9_classI_Rep3	3	522.7780151367188	2	522.779285	1043.54402	1.3677	0.00071502	-1.665	-0.0008704	-0.29722	-0.00015538	522.7782389666856	125.24	1.0903	124.19	123.84	124.94	-1.0519					49	20	3	0	0	0	0.11171	1	9728	9728		94.006	10.719	1	149440			54432	1979	44957	44993	59352	59352					0.023986617941773147
SPFFSPIHL	9	Unmodified	_SPFFSPIHL_					0	0	0		ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	ENSG00000099812|ENST00000215582|MISP	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.7789306640625	2	522.779285	1043.54402	-2.3955	-0.0012523	1.9423	0.0010154	-0.45321	-0.00023693	522.7801460343853	125.53	1.185	124.12	123.83	125.02	-1.4143					66	23	4	0	0	0	0.18193	1	11930	11930		79.451	16.145	1	151950			54433	1979	44957	44993	59353	59353					0.023986617941773147
SPFKKSGCL	9	Unmodified	_SPFKKSGCL_					0	0	0			REV__tr|A0A7D7A3P4|A0A7D7A3P4_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22425PE=4SV=1	REV__tr|A0A7D7A3P4|A0A7D7A3P4_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22425PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	483.7590637207031	2	483.757495	965.500437	1.787	0.00086446	1.3145	0.00063589	3.1014	0.0015003	483.75798479305814	134.7	2.7244	134.7	134.34	137.06	0					135	58	4	0	0	0	0.29717	1	15707	15707		63.306	3.0123	1	4346500	+		54434	32591	44958	44994	59354	59354					0.01630729025407618
SPFLRSSGW	9	Unmodified	_SPFLRSSGW_					0	0	0			REV__ENST00000437114.5_1_2:144969086-144987882:-|nuORF	REV__ENST00000437114.5_1_2:144969086-144987882:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.80126953125	2	518.764166	1035.51378	0.98079	0.0005088	-2.347	-0.0012175	-1.3662	-0.00070873	519.2647115400285	86.448	0.44139	83.821	83.613	84.054	-2.6269					13	8	3	0	0	0	0.027462	1	7309	7309		38.806	0	1	29921	+		54435	25790	44959	44995	59355	59355					-0.002556968710223373
SPFLVLAI	8	Unmodified	_SPFLVLAI_					0	0	0		ENSG00000162551|ENST00000374840|ALPL	ENSG00000162551|ENST00000374840|ALPL	ENSG00000162551|ENST00000374840|ALPL	MULTI-MSMS	OvCa9_classI_Rep2	2	430.2660827636719	2	430.268022	858.521491	-2.5548	-0.0010992	-1.9411	-0.00083521	-4.4959	-0.0019345	430.2670608792861	35.386	1.0933	32.676	32.356	33.449	-2.7097					41	21	3	0	0	0	0.69415	1	1427	1427		44.531	7.5026	1	137510			54436	6192	44960	44996	59356	59356					0.08657062396559922
SPFPHISIF	9	Unmodified	_SPFPHISIF_					0	0	0		HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|27|1|sense	HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|27|1|sense	HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|27|1|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	522.7783813476562	2	522.779285	1043.54402	1.3677	0.00071502	-1.665	-0.0008704	-0.29722	-0.00015538	522.7782389666856	125.24	1.0903	124.19	123.84	124.94	-1.0519					49	20	3	0	0	0	0.22961	1	9745	9745		71.296	10.324	1	149440			54437	14418	44961	44997	59357	59357					0.023986617941773147
SPFPHISIF	9	Unmodified	_SPFPHISIF_					0	0	0		HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|27|1|sense	HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|27|1|sense	HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|27|1|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.7787475585938	2	522.779285	1043.54402	-2.3955	-0.0012523	1.9423	0.0010154	-0.45321	-0.00023693	522.7801460343853	125.53	1.185	124.12	123.83	125.02	-1.4143					66	23	4	0	0	0	0.29717	1	11942	11942		63.306	4.5243	1	151950			54438	14418	44961	44997	59358	59358					0.023986617941773147
SPFRIKDSL	9	Unmodified	_SPFRIKDSL_					0	0	0			REV__ENSG00000173612|ENST00000310357|GPRC6A	REV__ENSG00000173612|ENST00000310357|GPRC6A	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.2836303710938	2	531.800749	1061.58694	-0.90896	-0.00048338	3.7589	0.001999	2.8499	0.0015156	532.3045098082197	63.831	0.68706	63.831	63.607	64.294	0					31	16	4	0	0	0	0.027462	1	5831	5831		26.693	0	1	425800	+		54439	21790	44962	44998	59359	59359					0.058614318515992636
SPGAHSPR	8	Unmodified	_SPGAHSPR_					0	0	0		TNS2|p.P1240Lfs*67|1|0.09|ENSG00000111077|chr12:53062426-53062427|-/T|frameshift_variant;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2;nc|ENSG00000111077|Q63HR2-5|TNS2	TNS2|p.P1240Lfs*67|1|0.09|ENSG00000111077|chr12:53062426-53062427|-/T|frameshift_variant	TNS2|p.P1240Lfs*67|1|0.09|ENSG00000111077|chr12:53062426-53062427|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	405.5531311035156	2	404.706651	807.39875	1.7783	0.00071969	-3.4045	-0.0013778	-1.6262	-0.00065813	404.70558488033794	47.83	1.4326	44.723	44.433	45.866	-3.1077					62	27	4	0	0	0	0.028476	1	2595	2595		24.203	0	1	386490			54440	2809	44963	44999	59360	59360					-0.012653812821440624
SPGAPFSADL	10	Unmodified	_SPGAPFSADL_					0	0	0			REV__ENST00000494777.1_1_2:220479793-220480912:+|nuORF	REV__ENST00000494777.1_1_2:220479793-220480912:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	480.27301025390625	2	481.234907	960.455261	0.049498	2.382E-05	-3.4589	-0.0016646	-3.4095	-0.0016407	481.2334872163908	79.708	0.56315	78.013	77.61	78.173	-1.6951					18	10	3	0	0	0	0.026688	1	6665	6665		19.104	0	1	10164	+		54441	26733	44964	45000	59361	59361					-0.02654798236142142
SPGARLNL	8	Unmodified	_SPGARLNL_					0	0	0			REV__ENSG00000129195|ENST00000572447|PIMREG	REV__ENSG00000129195|ENST00000572447|PIMREG	MULTI-SECPEP	OvCa99_classI_Rep5	1	413.26885986328125	2	414.240327	826.466101	-0.22008	-9.1167E-05	3.8469	0.0015936	3.6269	0.0015024	414.2404314263375	34.337	0.4716	34.337	34.161	34.632	0					16	9	3	0	0	0	0.028476	1	1646	1646		1.2052	0	1	82315	+		54442	15950	44965	45001	59362	59362					0.045926489288035555
SPGDLATTFSG	11	Unmodified	_SPGDLATTFSG_					0	0	0			REV__nc|ENSG00000041982|P24821-4|TNC	REV__nc|ENSG00000041982|P24821-4|TNC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.3156127929688	2	526.748379	1051.4822	-2.3283	-0.0012264	1.3693	0.00072128	-0.95903	-0.00050517	527.2506506347869	125.33	0.15759	123.91	123.78	123.94	-1.4143					4	2	2	0	0	0	0.026137	1	11899	11899		19.104	0	1	5114.9	+		54443	16634	44966	45002	59363	59363					-0.0414773441559646
SPGDPLGLP	9	Unmodified	_SPGDPLGLP_					0	0	0		ENST00000355086.7_1_12:64238100-64238409:+|nuORF	ENST00000355086.7_1_12:64238100-64238409:+|nuORF	ENST00000355086.7_1_12:64238100-64238409:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	427.240478515625	2	426.726718	851.438883	0.095931	4.0936E-05	0.32816	0.00014004	0.42409	0.00018097	426.7266713410799	47.14	0.6172	47.14	46.719	47.336	0					24	13	3	0	0	0	0.027462	1	3401	3401		29.15	0	1	246710			54444	10672	44967	45003	59364	59364					0.007221205977657519
SPGELVVE	8	Unmodified	_SPGELVVE_					0	0	0		ENSG00000265203|ENST00000584701|RBP3	ENSG00000265203|ENST00000584701|RBP3	ENSG00000265203|ENST00000584701|RBP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.90863037109375	2	415.218726	828.422899	-0.52521	-0.00021808	2.5523	0.0010598	2.0271	0.00084169	415.21968323318833	43.758	0.68749	43.758	43.393	44.08	0					26	15	2	0	0	0	0.028476	1	2880	2880		23.042	10.083	1	144460			54445	9521	44968	45004	59365	59365					0.001824143608587292
SPGERATL	8	Unmodified	_SPGERATL_					0	0	0		nc|ENSG00000211625|A0A0C4DH25|IGKV3D-20;nc|ENSG00000239951|P01619|IGKV3-20;nc|ENSG00000228325|A0A0C4DH55|IGKV3D-7;nc|ENSG00000241351|P04433|IGKV3-11;nc|ENSG00000211632|A0A0A0MRZ8|IGKV3D-11;nc|ENSG00000244437|P01624|IGKV3-15;nc|ENSG00000224041|A0A087WSY6|IGKV3D-15	nc|ENSG00000211625|A0A0C4DH25|IGKV3D-20;nc|ENSG00000241351|P04433|IGKV3-11	nc|ENSG00000211625|A0A0C4DH25|IGKV3D-20	MULTI-MSMS	OvCa9_classI_Rep4_	4	415.7230224609375	2	415.721967	829.429381	-0.70802	-0.00029434	0.99835	0.00041504	0.29033	0.0001207	415.7221726444467	45.974	1.5035	42.901	42.613	44.117	-3.0724					61	28	3	0	0	0	0.18374	2	2392	2380;2392		127.46	17.342	1	519100			54446	15283;15284	44969	45005	59366;59367	59367					0.00784352312223291
SPGERATL	8	Unmodified	_SPGERATL_					0	0	0		nc|ENSG00000211625|A0A0C4DH25|IGKV3D-20;nc|ENSG00000239951|P01619|IGKV3-20;nc|ENSG00000228325|A0A0C4DH55|IGKV3D-7;nc|ENSG00000241351|P04433|IGKV3-11;nc|ENSG00000211632|A0A0A0MRZ8|IGKV3D-11;nc|ENSG00000244437|P01624|IGKV3-15;nc|ENSG00000224041|A0A087WSY6|IGKV3D-15	nc|ENSG00000211625|A0A0C4DH25|IGKV3D-20;nc|ENSG00000241351|P04433|IGKV3-11	nc|ENSG00000211625|A0A0C4DH25|IGKV3D-20	MULTI-MATCH	OvCa9_classI_Rep2	2		2	415.721967	829.429381	0.3384	0.00014068	0.21499	8.9378E-05	0.55339	0.00023006	415.72178916164467	45.899	1.146	43.189	42.897	44.043	-2.7097	0.14401	-0.00034805	NaN	127.46	41	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90588			54447	15283;15284	44969	45005							0.00784352312223291
SPGEVTGFG	9	Unmodified	_SPGEVTGFG_					0	0	0		ENSG00000183354|ENST00000399933|KIAA2026	ENSG00000183354|ENST00000399933|KIAA2026	ENSG00000183354|ENST00000399933|KIAA2026	MULTI-SECPEP	OvCa99_classI_Rep5	1	424.88104248046875	2	425.7007	849.386848	-0.24242	-0.0001032	1.833	0.00078033	1.5906	0.00067713	425.70133607149523	55.283	0.32989	55.283	55.15	55.48	0					10	7	2	0	0	0	0.027462	1	4525	4525		29.15	8.2026	1	293730			54448	8070	44970	45006	59368	59368					-0.04387042815983477
SPGEVTLTV	9	Unmodified	_SPGEVTLTV_					0	0	0			REV__chr19:15831356-15834636|257|11.17|0.13|6.48|+|2|UCA1,UCA1|1	REV__chr19:15831356-15834636|257|11.17|0.13|6.48|+|2|UCA1,UCA1|1	MSMS	OvCa99_classI_Rep5	1	451.746826171875	2	451.745108	901.475663	NaN	NaN	NaN	NaN	NaN	NaN	NaN	84.964	1	84.964	84.464	85.464	0								0	0	0	0.16997	1	8898	8898		51.335	7.2187	1		+		54449	15966	44971	45007	59369	59369					0.020983724236771195
SPGFEKHLE	9	Unmodified	_SPGFEKHLE_					0	0	0			REV__ENSG00000164294|ENST00000503787|GPX8	REV__ENSG00000164294|ENST00000503787|GPX8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.8192749023438	2	522.261456	1042.50836	0.8797	0.00045944	-2.3949	-0.0012508	-1.5152	-0.00079132	522.2594751052937	67.798	0.63231	64.308	64.136	64.769	-3.4902					16	12	2	0	0	0	0.027462	1	5038	5038		32.812	11.11	1	38892	+		54450	20968	44972	45008	59370	59370					-0.011194204534831442
SPGGGGGL	8	Unmodified	_SPGGGGGL_					0	0	0		ENST00000315436.7_1_12:118498915-118498975:-|nuORF	ENST00000315436.7_1_12:118498915-118498975:-|nuORF	ENST00000315436.7_1_12:118498915-118498975:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	601.3428344726562	1	601.294016	600.28674	3.0656	0.0018433	0.75881	0.00045627	3.8244	0.0022996	601.2930269960331	90.093	0.42125	90.093	89.848	90.269	0					14	9	2	0	0	0	0.028476	1	9650	9650		8.2313	3.5495	1	174400			54451	10334	44973	45009	59371	59371					-0.029392353591447318
SPGGGGHA	8	Unmodified	_SPGGGGHA_					0	0	0			REV__ASB16|p.T164Sfs*17|1|0.27|ENSG00000161664|chr17:44172232-44172233|-/TTCTCTGGCTCACGGTGGCGGGG|frameshift_variant	REV__ASB16|p.T164Sfs*17|1|0.27|ENSG00000161664|chr17:44172232-44172233|-/TTCTCTGGCTCACGGTGGCGGGG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	639.4446411132812	1	639.284514	638.277237	1.514	0.0009679	-0.93466	-0.00059751	0.57937	0.00037038	639.2882875009927	146.05	0.39975	146.05	145.83	146.23	0					9	7	2	0	0	0	0.028476	1	17055	17055		14.664	5.8418	1	42817	+		54452	15668	44974	45010	59372	59372					-0.05637003644676497
SPGGLVQPAE	10	Unmodified	_SPGGLVQPAE_					0	0	0			REV__nc|ENSG00000126259|Q6UWL6-3|KIRREL2	REV__nc|ENSG00000126259|Q6UWL6-3|KIRREL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.7791748046875	2	477.748182	953.481811	-0.81539	-0.00038955	-0.51437	-0.00024574	-1.3298	-0.00063529	477.7483971962288	43.758	0.30605	40.75	40.536	40.842	-3.0074					6	5	2	0	0	0	0.026548	1	2113	2113		46.457	31.592	1	46394	+		54453	18779	44975	45011	59373	59373					0.0032089065517766358
SPGGSVLLR	9	Unmodified	_SPGGSVLLR_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	OvCa9_classI_Rep2	2	442.28851318359375	2	443.261259	884.507966	0.46497	0.0002061	-0.47461	-0.00021038	-0.0096401	-4.2731E-06	443.2609935996083	68.316	0.83823	65.696	65.229	66.068	-2.6203					23	16	2	0	0	0	0.027462	1	5321	5321		11.511	4.3177	1	17853			54454	1754	44976	45012	59374	59374					0.061092046173257586
SPGHPPGSAF	10	Unmodified	_SPGHPPGSAF_					0	0	0		nc|ENSG00000187013|Q86X59|LINC02875	nc|ENSG00000187013|Q86X59|LINC02875	nc|ENSG00000187013|Q86X59|LINC02875	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.7791748046875	2	477.227417	952.44028	-0.76276	-0.00036401	2.2581	0.0010776	1.4953	0.0007136	477.2280536798488	43.922	0.50584	40.915	40.483	40.989	-3.0074					11	9	2	0	0	0	0.026523	1	2113	2113		49.442	0.23076	1	19505			54455	15223	44977	45013	59375	59375					-0.03784245313465817
SPGIVDRIK	9	Unmodified	_SPGIVDRIK_					0	0	0			REV__tr|A0A553SNV9|A0A553SNV9_NIACIPolyribonucleotidenucleotidyltransferaseOS=NialliacirculansOX=1397GN=pnpPE=3SV=1	REV__tr|A0A553SNV9|A0A553SNV9_NIACIPolyribonucleotidenucleotidyltransferaseOS=NialliacirculansOX=1397GN=pnpPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.31048583984375	2	492.795466	983.57638	-0.45374	-0.0002236	-1.0228	-0.00050402	-1.4765	-0.00072761	492.794977424221	102.77	0.98607	102.09	101.74	102.72	-0.68459					59	19	4	0	0	0	0.027426	1	9425	9425		56.721	0	1	116460	+		54456	30462	44978	45014	59376	59376					0.08393449197171776
SPGIVVIVK	9	Unmodified	_SPGIVVIVK_					0	0	0			REV__tr|A0A553SJE6|A0A553SJE6_NIACIAminoacidABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16605PE=4SV=1	REV__tr|A0A553SJE6|A0A553SJE6_NIACIAminoacidABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16605PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	456.7799072265625	2	456.299853	910.585153	1.2991	0.00059276	-1.3448	-0.00061363	-0.045739	-2.0871E-05	456.29916940569717	78.981	0.92696	77.241	76.951	77.878	-1.7398					35	17	3	0	0	0	0.027462	1	6688	6688		31.955	13.63	1	72539	+		54457	30002	44979	45015	59377	59377					0.1262842283365444
SPGIVVIVK	9	Unmodified	_SPGIVVIVK_					0	0	0			REV__tr|A0A553SJE6|A0A553SJE6_NIACIAminoacidABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16605PE=4SV=1	REV__tr|A0A553SJE6|A0A553SJE6_NIACIAminoacidABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16605PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.7802429199219	2	456.299853	910.585153	-0.45818	-0.00020907	0.43812	0.00019991	-0.020064	-9.1554E-06	456.30003750346737	80.182	0.78266	77.471	77.123	77.906	-2.7106					30	15	3	0	0	0	0.027462	1	6577	6577		21.96	18.276	1	81094	+		54458	30002	44979	45015	59378	59378					0.1262842283365444
SPGKPPTK	8	Unmodified	_SPGKPPTK_					0	0	0			REV__ENST00000518975.1_1_8:17566427-17579410:-|nuORF	REV__ENST00000518975.1_1_8:17566427-17579410:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	406.9194030761719	2	406.237253	810.459953	0.77103	0.00031322	-0.15235	-6.1889E-05	0.61869	0.00025133	406.2369841680731	39.31	0.35641	39.31	39.107	39.463	0					16	7	3	0	0	0	0.028476	1	2279	2279		3.41	0	1	149280	+		54459	18897	44980	45016	59379	59379					0.04714130697266228
SPGLDHVV	8	Unmodified	_SPGLDHVV_					0	0	0		ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	ENSG00000047578|ENST00000261588|KATNIP	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.5690612792969	2	412.21906	822.423567	3.3138	0.001366	3.8477	0.0015861	7.1616	0.0029521	412.22048970624917	84.71	0.6143	84.71	84.472	85.087	0					29	14	3	0	0	0	0.028476	1	8896	8896		7.6903	0	1	840670			54460	1146	44981	45017	59380	59380					0.005252538005720453
SPGLLDMVL	9	Unmodified	_SPGLLDMVL_					0	0	0			REV__CSNK1A1-PDE6A|1|fusion	REV__CSNK1A1-PDE6A|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.27740478515625	2	472.759704	943.504854	0.38424	0.00018165	-1.1153	-0.00052727	-0.73106	-0.00034562	472.7607931049064	62.88	0.82733	59.422	58.913	59.74	-3.4577					23	16	2	0	0	0	0.027433	1	4372	4372		30.504	8.5438	1	67013	+		54461	16244	44982	45018	59381	59381					0.03084193448307815
SPGLLTLPSY	10	Unmodified	_SPGLLTLPSY_					0	0	0		tr|A0A553SRG5|A0A553SRG5_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_01035PE=4SV=1	tr|A0A553SRG5|A0A553SRG5_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_01035PE=4SV=1	tr|A0A553SRG5|A0A553SRG5_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_01035PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.2893676757812	2	524.289682	1046.56481	-1.581	-0.00082889	-1.7735	-0.00092982	-3.3544	-0.0017587	524.2887464140517	44.627	1.9606	41.589	41.156	43.117	-3.0385					101	37	5	0	0	0	0.66721	1	2265	2265		34.173	5.023	1	2532700			54462	34264	44983	45019	59382	59382					0.04339207383191024
SPGLQHRL	8	Unmodified	_SPGLQHRL_					0	0	0			REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B	REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	454.223388671875	2	454.259051	906.503549	-0.051589	-2.3435E-05	-0.17407	-7.9071E-05	-0.22565	-0.00010251	454.2589750913317	40.135	0.87384	37.181	36.863	37.737	-2.9541					31	16	3	0	0	0	0.028476	1	1733	1733		29.15	7.4472	1	44607	+		54463	17199	44984	45020	59383	59383					0.046557401944255616
SPGLRDVAL	9	Unmodified	_SPGLRDVAL_					0	0	0		ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	ENSG00000095015|ENST00000399503|MAP3K1	MULTI-MSMS	OvCa9_classI_Rep4_	4	464.2679748535156	2	464.266542	926.51853	1.0654	0.00049462	-1.0727	-0.000498	-0.0072894	-3.3842E-06	464.2659729395353	85.603	1.1313	82.957	82.709	83.841	-2.6463					39	22	2	0	0	0	0.26538	1	7215	7215		66.962	2.7547	1	301060			54464	1919	44985	45021	59384	59384					0.052331872717559236
SPGLVLGRQL	10	Unmodified	_SPGLVLGRQL_					0	0	0			REV__ENSG00000204335|ENST00000375281|SP5	REV__ENSG00000204335|ENST00000375281|SP5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.7920532226562	2	520.316566	1038.61858	0.46679	0.00024288	0.073635	3.8313E-05	0.54042	0.00028119	520.3165189948165	96.717	0.74697	94.291	93.964	94.711	-2.4256					27	14	3	0	0	0	0.026688	1	8584	8584		40.778	1.972	1	112410	+		54465	23144	44986	45022	59385	59385					0.10081424605573375
SPGLVLGRQL	10	Unmodified	_SPGLVLGRQL_					0	0	0			REV__ENSG00000204335|ENST00000375281|SP5	REV__ENSG00000204335|ENST00000375281|SP5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	520.316566	1038.61858	0.033068	1.7206E-05	0.3301	0.00017175	0.36317	0.00018896	520.3166113459841	95.074	0.79091	94.046	93.824	94.615	-1.0281	-0.15783	-0.00018897	NaN	40.778	37	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92861	+		54466	23144	44986	45022							0.10081424605573375
SPGLVSLILL	10	Unmodified	_SPGLVSLILL_					0	0	0		nc|ENSG00000211793|A0A087WT02|TRAV9-2	nc|ENSG00000211793|A0A087WT02|TRAV9-2	nc|ENSG00000211793|A0A087WT02|TRAV9-2	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.84368896484375	2	506.326068	1010.63758	-0.92734	-0.00046954	-1.9121	-0.00096816	-2.8395	-0.0014377	506.3249489842302	75.656	1.4	73.802	73.481	74.881	-1.854					86	26	4	0	0	0	0.027056	1	6283	6283		14.865	3.9993	1	667480			54467	15296	44987	45023	59386	59386					0.13268961176629546
SPGPLRTPK	9	Unmodified	_SPGPLRTPK_					0	0	0			REV__ENSG00000067798|ENST00000397909|NAV3	REV__ENSG00000067798|ENST00000397909|NAV3	MULTI-MSMS	OvCa9_classI_Rep2	2	476.7828369140625	2	476.782359	951.550165	0.47987	0.00022879	-0.57998	-0.00027652	-0.10011	-4.7731E-05	476.7819652613016	43.145	1.2386	40.436	40.114	41.353	-2.7097					56	24	4	0	0	0	0.38969	2	2369	2369;2387		52.937	2.0937	1	295300	+		54468	16840	44988	45024	59387;59388	59387					0.07245180025699938
SPGPLRTPK	9	Unmodified	_SPGPLRTPK_					0	0	0			REV__ENSG00000067798|ENST00000397909|NAV3	REV__ENSG00000067798|ENST00000397909|NAV3	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.7820739746094	2	476.782359	951.550165	-0.71651	-0.00034162	0.34545	0.0001647	-0.37106	-0.00017692	476.78251062896163	43.464	1.7317	40.457	40.115	41.847	-3.0074					59	33	2	0	0	0	0.13482	1	2083	2083		87.754	0	1	1543100	+		54469	16840	44988	45024	59389	59389					0.07245180025699938
SPGPWRKP	8	Unmodified	_SPGPWRKP_					0	0	0		ENST00000503548.1_1_4:1379569-1379746:+|nuORF	ENST00000503548.1_1_4:1379569-1379746:+|nuORF	ENST00000503548.1_1_4:1379569-1379746:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.77203369140625	2	462.756144	923.497735	0.24824	0.00011488	-2.8982	-0.0013411	-2.6499	-0.0012263	462.7525284321639	37.705	0.54893	34.812	34.591	35.14	-2.8925					14	10	2	0	0	0	0.028476	1	1405	1405		17.365	0	1	22380			54470	12862	44989	45025	59390	59390					0.03292641682753583
SPGQRAVLL	9	Unmodified	_SPGQRAVLL_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.7829284667969	2	470.782359	939.550165	-0.66865	-0.00031479	-0.088592	-4.1708E-05	-0.75724	-0.0003565	470.7822410343575	72.803	1.6374	69.407	69.058	70.696	-3.3961					62	33	3	0	0	0	0.26076	1	5606	5606		67.494	7.1997	1	717940			54471	8906	44990	45026	59391	59391					0.07797180025715988
SPGQRAVLL	9	Unmodified	_SPGQRAVLL_					0	0	0		ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	ENSG00000198911|ENST00000361204|SREBF2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	470.782359	939.550165	0.3962	0.00018652	-0.60752	-0.00028601	-0.21132	-9.9485E-05	470.7819534008284	71.721	2.0908	69.214	68.489	70.58	-2.5071	-0.096565	-0.00028248	NaN	67.494	78	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	249450			54472	8906	44990	45026							0.07797180025715988
SPGQRSISL	9	Unmodified	_SPGQRSISL_					0	0	0		ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1	ENSG00000097007|ENST00000318560|ABL1	ENSG00000097007|ENST00000318560|ABL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.7629699707031	2	472.761623	943.508694	0.81682	0.00038616	-1.1676	-0.000552	-0.35078	-0.00016584	472.7608951583114	64.219	0.63339	60.744	60.298	60.931	-3.475					31	12	4	0	0	0	0.036986	2	4552	4552;4561		129.42	26.648	1	1404000			54473	1953	44991	45027	59392;59393	59392					0.03467999266388233
SPGQRSISL	9	Unmodified	_SPGQRSISL_					0	0	0		ENSG00000097007|ENST00000318560|ABL1;nc|ENSG00000097007|P00519-2|ABL1	ENSG00000097007|ENST00000318560|ABL1	ENSG00000097007|ENST00000318560|ABL1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	472.761623	943.508694	-1.5479	-0.00073177	1.3196	0.00062384	-0.2283	-0.00010793	472.7618451657615	63.509	0.99715	60.765	59.951	60.949	-2.7444	0.01042	0.0018837	NaN	129.42	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	411650			54474	1953	44991	45027							0.03467999266388233
SPGRAALGL	9	Unmodified	_SPGRAALGL_					0	0	0		ENST00000560763.5_2_14:103800742-103802031:+|nuORF;ENST00000558316.5_2_14:103800742-103802173:+|nuORF;ENST00000558265.5_2_14:103800742-103802258:+|nuORF	ENST00000560763.5_2_14:103800742-103802031:+|nuORF	ENST00000560763.5_2_14:103800742-103802031:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	422.22393798828125	2	421.248152	840.481751	-0.20703	-8.721E-05	-0.24797	-0.00010446	-0.455	-0.00019167	421.24788228998955	61.456	0.85354	57.998	57.717	58.57	-3.4577					25	17	2	0	0	0	0.027462	1	4263	4263		17.365	0	1	57409			54475	13697	44992	45028	59394	59394					0.055129354458472335
SPGRLRLL	8	Unmodified	_SPGRLRLL_					0	0	0			REV__ENSG00000169231|ENST00000368378|THBS3	REV__ENSG00000169231|ENST00000368378|THBS3	MULTI-SECPEP	OvCa9_classI_Rep2	2	457.27069091796875	2	456.292894	910.571235	1.4998	0.00068434	-1.5454	-0.00070515	-0.045599	-2.0806E-05	456.292017786233	70.788	1.2424	68.217	67.815	69.058	-2.5707					54	23	3	0	0	0	0.028476	1	5743	5743		11.511	0	1	92771	+		54476	21447	44993	45029	59395	59395					0.11237190125223151
SPGRPKSE	8	Unmodified	_SPGRPKSE_					0	0	0			REV__nc|ENSG829|Q9HDB9|ERVK-5_gag	REV__nc|ENSG829|Q9HDB9|ERVK-5_gag	MULTI-SECPEP	OvCa99_classI_Rep5	1	429.73809814453125	2	429.227417	856.44028	0.018307	7.8578E-06	0.14702	6.3104E-05	0.16533	7.0962E-05	429.2274677970747	47.192	0.34851	47.192	47.03	47.379	0					10	7	2	0	0	0	0.028476	1	3392	3392		32.812	3.6629	1	297960	+		54477	29231	44994	45030	59396	59396					0.0063175468651479605
SPGSARSM	8	Oxidation (M)	_SPGSARSM(Oxidation (M))_		SPGSARSM(1)		SPGSARSM(42)	0	0	1		nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4;ENSG00000179604|ENST00000335793|CDC42EP4	nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4	nc|ENSG00000179604|Q9H3Q1-2|CDC42EP4	MULTI-MSMS	OvCa99_classI_Rep5	1	404.68560791015625	2	404.684527	807.354502	1.2132	0.00049097	0.23753	9.6126E-05	1.4508	0.0005871	404.6845046702909	71.114	0.62978	71.114	70.877	71.507	0					28	15	3	0	0	0	0.70469	1	6859	6859		42.396	7.1954	1	1073000			54478	7834	44995	45031	59397	59397		235			-0.056881534906324305
SPGTGLPLL	9	Unmodified	_SPGTGLPLL_					0	0	0		chr16:30095434-30095978|195|20.86|0.82|4.67|-|2|YPEL3,None|1	chr16:30095434-30095978|195|20.86|0.82|4.67|-|2|YPEL3,None|1	chr16:30095434-30095978|195|20.86|0.82|4.67|-|2|YPEL3,None|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	427.7402038574219	2	427.752736	853.490919	-0.26548	-0.00011356	-3.8354	-0.0016406	-4.1008	-0.0017541	427.7508269467393	40.417	0.55715	40.417	40.154	40.711	0					22	11	3	0	0	0	0.027462	1	2440	2440		23.042	0	1	162210			54479	375	44996	45032	59398	59398					0.0583128401152635
SPGTQDHS	8	Unmodified	_SPGTQDHS_					0	0	0		ENST00000461347.5_1_2:232347689-232348088:-|nuORF	ENST00000461347.5_1_2:232347689-232348088:-|nuORF	ENST00000461347.5_1_2:232347689-232348088:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.90826416015625	2	414.677756	827.34096	0.43127	0.00017884	-0.56358	-0.0002337	-0.13231	-5.4864E-05	414.67796534142957	43.29	0.37819	43.29	43.1	43.478	0					14	8	3	0	0	0	0.028476	1	2826	2826		12.207	0	1	169810			54480	12175	44997	45033	59399	59399					-0.07961687998226807
SPGTQRANAR	10	Unmodified	_SPGTQRANAR_					0	0	0		ENSG00000138411|ENST00000644978|HECW2	ENSG00000138411|ENST00000644978|HECW2	ENSG00000138411|ENST00000644978|HECW2	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3649291992188	2	529.278503	1056.54245	0.68929	0.00036482	-1.2188	-0.00064507	-0.52948	-0.00028024	529.2789227946521	158.92	0.52634	158.92	158.46	158.99	0					11	10	2	0	0	0	0.026606	1	18622	18622		29.17	0	1	19331			54481	4686	44998	45034	59400	59400					0.016444207581116643
SPGVQDQP	8	Unmodified	_SPGVQDQP_					0	0	0		AluJb_dup120393|chr20:34258955-34259234:+|1.6491951505596367|0.0068482995500215|7.91|394.0|1|1|sense;chr12:71535186-71544991|101|20.67|0.01|10.79|+|0|TE_info:AluJo,AluJo_dup50904,Alu,SINE,acceptor,+,71544991,71545112|LGR5,None|2	AluJb_dup120393|chr20:34258955-34259234:+|1.6491951505596367|0.0068482995500215|7.91|394.0|1|1|sense	AluJb_dup120393|chr20:34258955-34259234:+|1.6491951505596367|0.0068482995500215|7.91|394.0|1|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	413.8959655761719	2	414.198325	826.382096	-0.1216	-5.0367E-05	0.19462	8.061E-05	0.073016	3.0243E-05	414.1983601133393	46.599	0.82303	43.526	43.294	44.117	-3.0724					21	15	2	0	0	0	0.028476	1	2516	2516		16.473	0	1	26020			54482	64	44999	45035	59401	59401					-0.03803926958767079
SPGWDAKLL	9	Unmodified	_SPGWDAKLL_					0	0	0		ENSG00000135437|ENST00000257895|RDH5;ENST00000550412.5_2_12:56117861-56118326:+|nuORF	ENSG00000135437|ENST00000257895|RDH5;ENST00000550412.5_2_12:56117861-56118326:+|nuORF	ENST00000550412.5_2_12:56117861-56118326:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2492980957031	2	493.768917	985.523281	-0.10986	-5.4246E-05	-4.4798	-0.002212	-4.5896	-0.0022662	493.7667196498166	58.343	0.70451	58.343	58.069	58.774	0					28	16	2	0	0	0	0.027433	1	4942	4942		45.972	6.7194	1	1365100			54483	4380;13587	45000	45036	59402	59402					0.029940714145254788
SPGWDAKLL	9	Unmodified	_SPGWDAKLL_					0	0	0		ENSG00000135437|ENST00000257895|RDH5;ENST00000550412.5_2_12:56117861-56118326:+|nuORF	ENSG00000135437|ENST00000257895|RDH5;ENST00000550412.5_2_12:56117861-56118326:+|nuORF	ENST00000550412.5_2_12:56117861-56118326:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	493.768917	985.523281	-0.65578	-0.0003238	-4.2544	-0.0021007	-4.9102	-0.0024245	493.7669001777485	60.976	0.8425	58.206	57.871	58.714	-2.7702	-0.030832	0.0005752	NaN	45.972	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28222			54484	4380;13587	45000	45036							0.029940714145254788
SPHGGALVM	9	Oxidation (M)	_SPHGGALVM(Oxidation (M))_		SPHGGALVM(1)		SPHGGALVM(60)	0	0	1		ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	442.7192687988281	2	442.71837	883.422187	-0.59555	-0.00026366	0.89551	0.00039646	0.29996	0.0001328	442.7185701744671	46.548	1.4276	43.475	43.189	44.616	-3.0724					51	27	3	0	0	0	0.32337	1	2471	2471		60.294	12.378	1	522460			54485	6494	45001	45037	59403	59403		203			-0.024187035598401962
SPHIHPVDI	9	Unmodified	_SPHIHPVDI_					0	0	0		nc|ENSG00000254838|Q7Z2Y8|GVINP1;ENST00000526769.3_1_11:6735844-6741409:-|nuORF	nc|ENSG00000254838|Q7Z2Y8|GVINP1	nc|ENSG00000254838|Q7Z2Y8|GVINP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.79400634765625	2	507.771991	1013.52943	-1.0199	-0.00051788	4.0033	0.0020328	2.9834	0.0015149	507.7740629027142	70.812	1.1168	67.355	67.057	68.174	-3.4563					38	22	2	0	0	0	0.027441	1	5464	5464		45.952	0	1	314430			54486	15353	45002	45038	59404	59404					0.023205896460240183
SPHIPAPP	8	Unmodified	_SPHIPAPP_					0	0	0		CDC25B|p.E193Gfs*42|1|0.12|ENSG00000101224|chr20:3800861-3800861|A/-|frameshift_variant	CDC25B|p.E193Gfs*42|1|0.12|ENSG00000101224|chr20:3800861-3800861|A/-|frameshift_variant	CDC25B|p.E193Gfs*42|1|0.12|ENSG00000101224|chr20:3800861-3800861|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	408.2238464355469	2	408.224146	814.433738	0.54167	0.00022112	0.15981	6.5238E-05	0.70148	0.00028636	408.2240613666558	41.702	0.86694	41.702	41.375	42.242	0					37	19	3	0	0	0	0.54878	1	2622	2622		72.62	23.409	1	894030			54487	207	45003	45039	59405	59405					0.019098615257917118
SPHIPAPP	8	Unmodified	_SPHIPAPP_					0	0	0		CDC25B|p.E193Gfs*42|1|0.12|ENSG00000101224|chr20:3800861-3800861|A/-|frameshift_variant	CDC25B|p.E193Gfs*42|1|0.12|ENSG00000101224|chr20:3800861-3800861|A/-|frameshift_variant	CDC25B|p.E193Gfs*42|1|0.12|ENSG00000101224|chr20:3800861-3800861|A/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	408.224146	814.433738	1.5024	0.00061332	-5.5168	-0.0022521	-4.0144	-0.0016388	408.2217568806717	44.073	0.49902	41.363	41.153	41.653	-2.7097	-0.16934	-0.0026236	NaN	72.62	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12670			54488	207	45003	45039							0.019098615257917118
SPHKWNDK	8	Unmodified	_SPHKWNDK_					0	0	0		CHAMP1|p.D89H|1|0.21|ENSG00000198824|chr13:114324107-114324107|G/C|missense_variant	CHAMP1|p.D89H|1|0.21|ENSG00000198824|chr13:114324107-114324107|G/C|missense_variant	CHAMP1|p.D89H|1|0.21|ENSG00000198824|chr13:114324107-114324107|G/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.811279296875	2	506.253966	1010.49338	-0.59735	-0.00030241	-0.74551	-0.00037742	-1.3429	-0.00067983	506.25273261709054	102.03	0.31316	99.829	99.624	99.937	-2.1994					8	5	2	0	0	0	0.028476	1	9179	9179		51.335	8.861	1	11030			54489	230	45004	45040	59406	59406					-0.011448675308201928
SPHPAIARL	9	Unmodified	_SPHPAIARL_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	OvCa9_classI_Rep2	2	481.28375244140625	2	481.282526	960.550499	-0.81055	-0.0003901	0.44052	0.00021201	-0.37003	-0.00017809	481.28269787534566	57.799	2.0625	55.007	54.377	56.44	-2.7921					121	40	4	0	0	0	0.33652	4	4138	4126;4132;4138;4156		58.782	8.7574	1	1037900			54490	9254	45005	45041	59407;59408;59409;59410	59409					0.06864599745563282
SPHPAIARL	9	Unmodified	_SPHPAIARL_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	481.282526	960.550499	-0.24437	-0.00011761	-0.35554	-0.00017112	-0.59991	-0.00028873	481.28231655098585	58.503	1.9871	55.111	54.701	56.689	-3.392	0.052131	-0.00053926	NaN	58.782	102	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1911900			54491	9254	45005	45041							0.06864599745563282
SPHPVTALL	9	Unmodified	_SPHPVTALL_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.P9131Lfs*70|1|0.1|ENSG00000181143|chr19:8949378-8949379|-/CATCCTTCCACAA|frameshift_variant;MUC16|p.F9515*|1|0.24|ENSG00000181143|chr19:8948225-8948226|AA/-|frameshift_variant;MUC16|p.T9803Vfs*24|1|0.05|ENSG00000181143|chr19:8947363-8947364|-/GGAC|frameshift_variant;MUC16|p.D9802Vfs*25|1|0.05|ENSG00000181143|chr19:8947365-8947366|-/ATCAACAACACCCAACTGGGTAGAAA|frameshift_variant;MUC16|p.E8637Kfs*10|1|0.09|ENSG00000181143|chr19:8950858-8950861|TCTC/-|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.77301025390625	2	467.77146	933.528367	0.86402	0.00040417	-1.1076	-0.00051808	-0.24353	-0.00011392	467.77078318123955	89.65	1.5432	87.075	86.413	87.956	-2.575					74	30	4	0	0	0	0.33652	1	7689	7689		58.782	3.2778	1	410380			54492	7920	45006	45042	59411	59411					0.058943752771256186
SPHPVYTAV	9	Unmodified	_SPHPVYTAV_					0	0	0		ENST00000533443.5_3_11:44960744-44968624:-|nuORF	ENST00000533443.5_3_11:44960744-44968624:-|nuORF	ENST00000533443.5_3_11:44960744-44968624:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.7786865234375	2	485.753267	969.491981	-0.19472	-9.4585E-05	4.068	0.0019761	3.8733	0.0018815	485.7551696822335	48.223	0.76851	45.115	44.888	45.657	-3.1077					23	14	2	0	0	0	0.027462	1	2624	2624		23.042	0	1	64117			54493	13341	45007	45043	59412	59412					0.006014983804220719
SPHRALPL	8	Unmodified	_SPHRALPL_					0	0	0		HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|70|2|sense	HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|70|2|sense	HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|70|2|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	446.2756652832031	2	445.763969	889.513385	-1.1391	-0.00050779	4.4032	0.0019628	3.264	0.001455	445.7638489222395	72.625	0.92124	69.229	68.96	69.881	-3.3961					22	18	2	0	0	0	0.028476	1	5632	5632		16.473	0	1	62080			54494	14419	45008	45044	59413	59413					0.06420928199793252
SPHSVVKTIV	10	Unmodified	_SPHSVVKTIV_					0	0	0			REV__NOX3|p.Q345Pfs*83|2|0.09|ENSG00000074771|chr6:155428905-155428906|-/G|frameshift_variant	REV__NOX3|p.Q345Pfs*83|2|0.09|ENSG00000074771|chr6:155428905-155428906|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	533.2722778320312	2	533.816399	1065.61824	0.2436	0.00013004	-1.3971	-0.00074578	-1.1535	-0.00061574	533.8154099101986	88.739	1.078	86.608	86.413	87.491	-2.1309					38	21	4	0	0	0	0.026931	1	5450	5450		17.468	0	1	151890	+		54495	16954	45009	45045	59414	59414					0.08806004885695984
SPHSVVKTIV	10	Unmodified	_SPHSVVKTIV_					0	0	0			REV__NOX3|p.Q345Pfs*83|2|0.09|ENSG00000074771|chr6:155428905-155428906|-/G|frameshift_variant	REV__NOX3|p.Q345Pfs*83|2|0.09|ENSG00000074771|chr6:155428905-155428906|-/G|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	533.816399	1065.61824	0.70636	0.00037707	-3.6452	-0.0019459	-2.9388	-0.0015688	533.8137464523242	88.029	1.4733	86.657	86.049	87.522	-1.3722	0.050296	-0.0021391	NaN	28.081	43	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85387	+		54496	16954	45009	45045							0.08806004885695984
SPHVLYRELC	10	Unmodified	_SPHVLYRELC_					0	0	0			REV__ENST00000507681.1_1_5:179868817-179869781:+|nuORF	REV__ENST00000507681.1_1_5:179868817-179869781:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	607.8482055664062	2	608.81079	1215.60703	-1.1623	-0.00070761	2.5331	0.0015422	1.3708	0.00083454	608.8124082058309	69.083	0.94832	66.462	66.118	67.066	-2.6203					29	18	4	0	0	0	0.026802	1	5483	5483		42.396	6.7778	1	46318	+		54497	26903	45010	45046	59415	59415					0.007848595199220654
SPHVPHRVL	9	Unmodified	_SPHVPHRVL_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	OvCa9_classI_Rep2	2	521.3006591796875	2	521.30125	1040.58795	-0.71731	-0.00037394	0.24733	0.00012894	-0.46998	-0.000245	521.3013451951931	49.755	2.2298	46.995	46.325	48.555	-2.7603					109	44	4	0	0	0	0.42676	2	3190	3190;3196		49.442	19.6	1	840970			54498	4140	45011	45047	59416;59417	59416					0.06927691011196657
SPHVPHRVL	9	Unmodified	_SPHVPHRVL_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.3024291992188	2	521.30125	1040.58795	-1.7904	-0.00093334	1.5523	0.0008092	-0.23814	-0.00012414	521.3020127691736	50.387	1.4365	47.245	46.82	48.256	-3.1416					66	27	3	0	0	0	0.62352	1	2881	2881		29.15	0	1	883080			54499	4140	45011	45047	59418	59418					0.06927691011196657
SPHYRALSP	9	Unmodified	_SPHYRALSP_					0	0	0		ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.3035888671875	2	514.269616	1026.52468	-0.64824	-0.00033337	1.4056	0.00072286	0.75736	0.00038949	514.7719158513366	104.28	1.0496	102.17	101.75	102.8	-2.1192					21	19	2	0	0	0	0.027455	1	9442	9442		34.173	0	1	22102			54500	3028	45012	45048	59419	59419					0.01247705503283214
SPIEIPEAIRN	11	Unmodified	_SPIEIPEAIRN_					0	0	0		tr|A0A553SQI2|A0A553SQI2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07740PE=4SV=1	tr|A0A553SQI2|A0A553SQI2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07740PE=4SV=1	tr|A0A553SQI2|A0A553SQI2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07740PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	412.91015625	3	413.562827	1237.66665	1.2629	0.00052227	2.6566	0.0010987	3.9195	0.001621	413.56376453247634	43.624	0.84375	40.914	40.509	41.353	-2.7097					28	16	2	0	0	0	0.025955	1	2383	2383		9.2118	0	1	22668			54501	34163	45013	45049	59420	59420					0.05732453734935916
SPIEIPEAIRN	11	Unmodified	_SPIEIPEAIRN_					0	0	0		tr|A0A553SQI2|A0A553SQI2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07740PE=4SV=1	tr|A0A553SQI2|A0A553SQI2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07740PE=4SV=1	tr|A0A553SQI2|A0A553SQI2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07740PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	413.562827	1237.66665	-0.70553	-0.00029178	5.0902	0.0021051	4.3847	0.0018133	413.5647643901469	43.956	0.90605	40.949	40.589	41.495	-3.0074	0.017305	0.00081433	NaN	23.378	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76018			54502	34163	45013	45049							0.05732453734935916
SPIENQPDI	9	Unmodified	_SPIENQPDI_					0	0	0		tr|A0A553SMK8|A0A553SMK8_NIACIRing-cleavingdioxygenaseOS=NialliacirculansOX=1397GN=CEQ21_22800PE=4SV=1	tr|A0A553SMK8|A0A553SMK8_NIACIRing-cleavingdioxygenaseOS=NialliacirculansOX=1397GN=CEQ21_22800PE=4SV=1	tr|A0A553SMK8|A0A553SMK8_NIACIRing-cleavingdioxygenaseOS=NialliacirculansOX=1397GN=CEQ21_22800PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.8128662109375	2	506.750921	1011.48729	-1.2697	-0.0006434	0.73582	0.00037288	-0.53384	-0.00027052	506.751691765381	73.457	0.58097	70.061	69.881	70.462	-3.3961					13	11	2	0	0	0	0.027343	1	5732	5732		68.787	0	1	30143			54503	33844	45014	45050	59421	59421					-0.017994305530010024
SPIKRALGL	9	Unmodified	_SPIKRALGL_					0	0	0		ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-SECPEP	OvCa9_classI_Rep3	3	477.9344177246094	2	477.808377	953.6022	1.0668	0.00050975	-1.0431	-0.0004984	0.023747	1.1346E-05	477.8078064780553	70.547	1.362	67.827	67.402	68.764	-2.7196					55	26	3	0	0	0	0.027418	1	3222	3222		49.442	27.482	1	202800			54504	2336	45015	45051	59422	59422					0.12354343439449167
SPIKVTLATL	10	Unmodified	_SPIKVTLATL_					0	0	0		ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000521260.1_1_5:170818338-170818467:+|nuORF;ENST00000513394.1_1_8:57014234-57014760:-|nuORF;ENST00000438918.1_1_2:204637659-204638058:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	MSMS	OvCa9_classI_Rep3	3	521.830322265625	2	521.828975	1041.6434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.33	1	105.07	104.57	105.57	-1.267								0	0	0	0.00014786	1	7494	7494		146.79	42.039	1				54505	7921	45016	45052	59423	59423					0.12424059688282796
SPIKVTLATL	10	Unmodified	_SPIKVTLATL_					0	0	0		ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000521260.1_1_5:170818338-170818467:+|nuORF;ENST00000513394.1_1_8:57014234-57014760:-|nuORF;ENST00000438918.1_1_2:204637659-204638058:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	MSMS	OvCa9_classI_Rep3	3	521.8303833007812	2	521.828975	1041.6434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.38	1	105.12	104.62	105.62	-1.267								0	0	0	0.035236	1	7500	7500		112.11	7.3607	1				54506	7921	45016	45052	59424	59424					0.12424059688282796
SPIKVTLATL	10	Unmodified	_SPIKVTLATL_					0	0	0		ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000521260.1_1_5:170818338-170818467:+|nuORF;ENST00000513394.1_1_8:57014234-57014760:-|nuORF;ENST00000438918.1_1_2:204637659-204638058:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	MSMS	OvCa9_classI_Rep3	3	521.829345703125	2	521.828975	1041.6434	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.45	1	105.18	104.68	105.68	-1.267								0	0	0	0.043646	1	7508	7508		109.48	24.563	1				54507	7921	45016	45052	59425	59425					0.12424059688282796
SPIKVTLATL	10	Unmodified	_SPIKVTLATL_					0	0	0		ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000521260.1_1_5:170818338-170818467:+|nuORF;ENST00000513394.1_1_8:57014234-57014760:-|nuORF;ENST00000438918.1_1_2:204637659-204638058:-|nuORF;ENST00000412580.1_1_2:122466160-122466664:-|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.8292236328125	2	521.828975	1041.6434	-1.6815	-0.00087745	0.86022	0.00044889	-0.82127	-0.00042856	521.8292899113304	106.92	0.99155	105.04	104.75	105.74	-1.8785					52	18	4	0	0	0	0.073842	2	9737	9737;9759		120.31	35.39	1	576700			54508	7921	45016	45052	59426;59427	59426					0.12424059688282796
SPITETIVL	9	Unmodified	_SPITETIVL_					0	0	0			REV__nc|ENSG00000080644|P32297-3|CHRNA3;REV__nc|ENSG00000147434|Q15825-2|CHRNA6	REV__nc|ENSG00000080644|P32297-3|CHRNA3	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.7846374511719	2	486.784233	971.553913	-0.0090994	-4.4294E-06	0.32166	0.00015658	0.31256	0.00015215	486.78425321749165	74.933	0.67478	71.702	71.483	72.157	-3.2308					25	13	2	0	0	0	0.22961	1	5908	5908		71.296	10.324	1	636500	+		54509	17058;20064	45017	45053	59428	59428					0.0669980500889551
SPIVKVPLY	9	Unmodified	_SPIVKVPLY_					0	0	0			REV__nc|ENSG00000138039|P22888-2|LHCGR	REV__nc|ENSG00000138039|P22888-2|LHCGR	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.8045654296875	2	508.312961	1014.61137	0.046587	2.3681E-05	-4.4825	-0.0022785	-4.4359	-0.0022548	508.31025121022464	59.813	1.5789	56.421	55.953	57.532	-3.392					61	31	4	0	0	0	0.027462	1	4137	4137		24.203	14.732	1	559700	+		54510	19502	45018	45054	59429	59429					0.10464692005120924
SPKAGPGLL	9	Unmodified	_SPKAGPGLL_					0	0	0			REV__ENSG00000099282|ENST00000373290|TSPAN15	REV__ENSG00000099282|ENST00000373290|TSPAN15	MULTI-MSMS	OvCa9_classI_Rep3	3	420.2523498535156	2	420.252903	838.491253	0.57551	0.00024186	-0.53085	-0.00022309	0.04466	1.8769E-05	420.25256475380445	109.42	2.3842	108.27	107.88	110.26	-1.1444					107	45	4	0	0	0	0.24951	2	7879	7866;7879		68.787	10.976	1	608560	+		54511	17318	45019	45055	59430;59431	59431					0.06554703731376321
SPKAQWPQ	8	Unmodified	_SPKAQWPQ_					0	0	0		nc|ENSG00000011451|O95785|WIZ;ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785-3|WIZ;ENSG00000011451.21,WIZ,chr19,-,I7.1,15432762,15433164|90|6.04|3|intron;ENSG00000011451.21,WIZ,chr19,-,I7.1,15432762,15433164|90|6.04|2|intron;ENSG00000011451.21,WIZ,chr19,-,I7.1,15432762,15433164|90|6.04|4|intron;ENSG00000011451.21,WIZ,chr19,-,I7.1,15432762,15433164|90|6.04|6|intron;ENSG00000011451.21,WIZ,chr19,-,I7.1,15432762,15433164|90|6.04|5|intron;ENSG00000011451.21,WIZ,chr19,-,I7.1,15432762,15433164|90|6.04|1|intron;WIZ|p.A336Gfs*19|1|0.29|ENSG00000011451|chr19:15427058-15427059|-/TTGACCTCTGCTGGGAGGAGGCGGTCCT|frameshift_variant;ENSG00000011451.21,WIZ,chr19,-,I7.1,15432762,15433164|90|6.04|8|intron	nc|ENSG00000011451|O95785|WIZ	nc|ENSG00000011451|O95785|WIZ	MULTI-SECPEP	OvCa9_classI_Rep2	2	471.7708740234375	2	471.245609	940.476666	-0.4836	-0.00022789	4.2053	0.0019817	3.7217	0.0017538	471.24762496984954	64.296	0.84243	61.572	61.128	61.97	-2.7245					31	15	3	0	0	0	0.028476	1	4902	4902		45.952	10.334	1	37594			54512	965	45020	45056	59432	59432					0.0040463158322836534
SPKGHLTRL	9	Unmodified	_SPKGHLTRL_					0	0	0		nc|ENSG00000103152|P29372-5|MPG;nc|ENSG00000103152|P29372-2|MPG;ENSG00000103152|ENST00000356432|MPG;nc|ENSG00000103152|P29372|MPG;ENST00000475280.1_1_16:128308-129705:+|nuORF	nc|ENSG00000103152|P29372-5|MPG	nc|ENSG00000103152|P29372-5|MPG	MULTI-MSMS	OvCa9_classI_Rep2	2	504.8011779785156	2	504.801083	1007.58761	-1.3473	-0.00068012	1.0581	0.00053415	-0.28917	-0.00014597	504.80145583104496	39.099	1.0401	36.39	36.112	37.152	-2.7097					52	20	4	0	0	0	0.40818	3	1883	1873;1883;1888		51.193	12.387	1	219820			54513	2286	45021	45057	59433;59434;59435	59434					0.0841227129130857
SPKGHLTRL	9	Unmodified	_SPKGHLTRL_					0	0	0		nc|ENSG00000103152|P29372-5|MPG;nc|ENSG00000103152|P29372-2|MPG;ENSG00000103152|ENST00000356432|MPG;nc|ENSG00000103152|P29372|MPG;ENST00000475280.1_1_16:128308-129705:+|nuORF	nc|ENSG00000103152|P29372-5|MPG	nc|ENSG00000103152|P29372-5|MPG	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.80096435546875	2	504.801083	1007.58761	-0.51627	-0.00026061	0.016581	8.3702E-06	-0.49969	-0.00025224	504.8009963645628	39.298	1.0939	36.371	36.146	37.24	-2.9264					65	21	4	0	0	0	0.38807	1	1616	1616		53.089	9.4629	1	680690			54514	2286	45021	45057	59436	59436					0.0841227129130857
SPKGKFSLF	9	Unmodified	_SPKGKFSLF_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;ENST00000525875.1_1_11:62201326-62284770:-|nuORF	ENSG00000124942|ENST00000378024|AHNAK;ENST00000525875.1_1_11:62201326-62284770:-|nuORF	ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.2615966796875	2	505.78711	1009.55967	-0.029455	-1.4898E-05	-1.0225	-0.00051719	-1.052	-0.00053209	505.78670699708925	80.339	1.7519	78.643	78.173	79.925	-1.6951					72	34	3	0	0	0	0.027433	1	6792	6792		54.776	5.3348	1	746210			54515	3687;13203	45022	45058	59437	59437					0.05526948311239721
SPKISELPVHI	11	Unmodified	_SPKISELPVHI_					0	0	0			REV__nc|ENSG00000125447|Q9NZ52-3|GGA3	REV__nc|ENSG00000125447|Q9NZ52-3|GGA3	MULTI-MSMS	OvCa9_classI_Rep4_	4	407.23846435546875	3	407.239684	1218.69722	2.1016	0.00085586	-4.2334	-0.001724	-2.1318	-0.00086816	407.2378761201888	34.958	1.453	32.115	31.792	33.245	-2.8429					72	28	4	0	0	0	0.51772	1	1067	1067		52.167	15.85	1	382270	+		54516	18724	45023	45059	59438	59438					0.09662232119990222
SPKLPFLL	8	Unmodified	_SPKLPFLL_					0	0	0			REV__L1MC1_dup7132|chr8:144750012-144750846:-|1.0695587535362288|0.4006023584430365|1.42|429.0|42|2|anti-sense	REV__L1MC1_dup7132|chr8:144750012-144750846:-|1.0695587535362288|0.4006023584430365|1.42|429.0|42|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.2301025390625	2	457.789121	913.56369	-0.22241	-0.00010182	-4.2618	-0.001951	-4.4842	-0.0020528	457.7871738343327	67.675	0.3514	67.675	67.528	67.88	0					11	8	2	0	0	0	0.028476	1	6347	6347		65.803	12.452	1	139950	+		54517	28421	45024	45060	59439	59439					0.10345037804950152
SPKLPVSSL	9	Unmodified	_SPKLPVSSL_					0	0	0		ENSG00000116017|ENST00000263620|ARID3A	ENSG00000116017|ENST00000263620|ARID3A	ENSG00000116017|ENST00000263620|ARID3A	MULTI-MSMS	OvCa9_classI_Rep2	2	464.2790222167969	2	464.279118	926.543683	-0.16652	-7.7314E-05	-0.22585	-0.00010486	-0.39237	-0.00018217	464.2789154549464	86.388	1.8341	84.897	84.394	86.228	-1.4906					100	35	5	0	0	0	0.030867	5	7504	7501;7504;7510;7516;7530		134.77	13.065	1	659960			54518	3150	45025	45061	59440;59441;59442;59443;59444	59441					0.07747242074333371
SPKLPVSSL	9	Unmodified	_SPKLPVSSL_					0	0	0		ENSG00000116017|ENST00000263620|ARID3A	ENSG00000116017|ENST00000263620|ARID3A	ENSG00000116017|ENST00000263620|ARID3A	MULTI-MSMS	OvCa9_classI_Rep3	3	464.280517578125	2	464.279118	926.543683	-1.0334	-0.0004798	0.63593	0.00029525	-0.3975	-0.00018455	464.2793339569283	87.136	1.8886	84.959	84.38	86.269	-2.1768					101	36	4	0	0	0	0.010478	3	5227	5220;5227;5233		167.23	46.608	1	1304700			54519	3150	45025	45061	59445;59446;59447	59446					0.07747242074333371
SPKLPVSSL	9	Unmodified	_SPKLPVSSL_					0	0	0		ENSG00000116017|ENST00000263620|ARID3A	ENSG00000116017|ENST00000263620|ARID3A	ENSG00000116017|ENST00000263620|ARID3A	MULTI-MSMS	OvCa9_classI_Rep4_	4	464.28045654296875	2	464.279118	926.543683	-1.6426	-0.00076263	0.57658	0.00026769	-1.066	-0.00049494	464.2793232455012	87.539	1.9131	84.912	84.399	86.312	-2.6269					96	37	4	0	0	0	0.036986	3	7441	7441;7453;7467		129.42	27.89	1	1058600			54520	3150	45025	45061	59448;59449;59450	59448					0.07747242074333371
SPKNIDRR	8	Unmodified	_SPKNIDRR_					0	0	0		ENSG00000117151|ENST00000370630|CTBS	ENSG00000117151|ENST00000370630|CTBS	ENSG00000117151|ENST00000370630|CTBS	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.2903137207031	2	493.280515	984.546476	-1.4774	-0.00072875	1.3597	0.00067072	-0.11765	-5.8034E-05	493.28105321851694	35.051	0.99264	32.341	32.059	33.052	-2.7097					34	19	3	0	0	0	0.028476	1	1397	1397		37.159	1.5408	1	90527			54521	3239	45026	45062	59451	59451					0.053585102518468375
SPKRIQSP	8	Unmodified	_SPKRIQSP_					0	0	0		ENST00000413697.5_1_2:100019089-100065949:-|nuORF;REV1|p.A1133Dfs*21|1|0.04|ENSG00000135945|chr2:99402787-99402788|-/GT|frameshift_variant;nc|ENSG00000135945|Q9UBZ9-2|REV1;ENSG00000135945|ENST00000258428|REV1;ENST00000465086.1_1_2:100019089-100019579:-|nuORF	ENST00000413697.5_1_2:100019089-100065949:-|nuORF	ENST00000413697.5_1_2:100019089-100065949:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.76611328125	2	456.766709	911.518865	0.94223	0.00043038	-1.2537	-0.00057266	-0.31149	-0.00014228	456.7661570731372	37.409	3.2302	34.517	33.894	37.124	-2.8925					138	64	4	0	0	0	0.64026	1	1353	1353		55.504	0	1	3176200			54522	4437	45027	45063	59452	59452					0.05956606991605895
SPKSLRTPPI	10	Unmodified	_SPKSLRTPPI_					0	0	0			REV__nc|ENSG00000059377|P24557-3|TBXAS1	REV__nc|ENSG00000059377|P24557-3|TBXAS1	MULTI-MSMS	OvCa9_classI_Rep2	2	548.3292846679688	2	548.329673	1094.64479	-0.12096	-6.6329E-05	-0.25476	-0.00013969	-0.37573	-0.00020602	548.3294214278715	46.156	1.5889	43.446	43.048	44.637	-2.7097					78	31	4	0	0	0	0.32926	1	2728	2728		77.318	4.4383	1	518670	+		54523	28718	45028	45064	59453	59453					0.10125693777058586
SPKSLRTPPI	10	Unmodified	_SPKSLRTPPI_					0	0	0			REV__nc|ENSG00000059377|P24557-3|TBXAS1	REV__nc|ENSG00000059377|P24557-3|TBXAS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.3306884765625	2	548.329673	1094.64479	-0.69207	-0.00037948	0.15006	8.2283E-05	-0.54201	-0.0002972	548.3297346064472	46.571	2.5585	43.499	42.979	45.537	-3.0724					121	49	5	0	0	0	0.24425	1	2487	2487		87.696	4.946	1	2333100	+		54524	28718	45028	45064	59454	59454					0.10125693777058586
SPKSQNSPL	9	Unmodified	_SPKSQNSPL_					0	0	0		ENST00000368842.9_1_10:126301864-126302287:+|nuORF	ENST00000368842.9_1_10:126301864-126302287:+|nuORF	ENST00000368842.9_1_10:126301864-126302287:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	479.2797546386719	2	479.253631	956.49271	-0.45891	-0.00021994	4.0415	0.0019369	3.5826	0.001717	479.25462760995146	96.375	0.30409	94.546	94.471	94.775	-1.8286					9	5	2	0	0	0	0.027217	1	6341	6341		93.195	13.483	1	10169			54525	10883	45029	45065	59455	59455					0.012722930294785328
SPKTLQALLAY	11	Unmodified	_SPKTLQALLAY_					0	0	0			REV__ENSG00000166535|ENST00000299698|A2ML1	REV__ENSG00000166535|ENST00000299698|A2ML1	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.69580078125	3	402.236051	1203.68632	1.4495	0.00058303	-2.9371	-0.0011814	-1.4876	-0.00059836	402.23459539794237	32.294	0.74228	32.294	32.006	32.748	0					62	14	7	0	0	0	0.025955	1	1379	1379		18.531	0	1	1645000	+		54526	21205	45030	45066	59456	59456					0.09262829745716772
SPLAPACPL	9	Unmodified	_SPLAPACPL_					0	0	0			REV__ENST00000600059.5_1_19:48988799-49002658:-|nuORF	REV__ENST00000600059.5_1_19:48988799-49002658:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.7724914550781	2	434.733489	867.452425	-0.37343	-0.00016234	4.4149	0.0019193	4.0415	0.001757	434.73538637657634	41.885	0.52223	38.904	38.645	39.167	-2.9804					15	9	2	0	0	0	0.027462	1	1930	1930		14.664	6.9738	1	12860	+		54527	28026	45031	45067	59457	59457					0.013396551053460826
SPLDFTKYLK	10	Unmodified	_SPLDFTKYLK_					0	0	0		ENSG00000173145|ENST00000371361|NOC3L	ENSG00000173145|ENST00000371361|NOC3L	ENSG00000173145|ENST00000371361|NOC3L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	405.23828125	3	404.560535	1210.65977	0.93198	0.00037704	3.059	0.0012376	3.991	0.0016146	404.561777507066	46.146	0.83368	43.073	42.718	43.552	-3.0724					24	15	2	0	0	0	0.02678	1	2365	2365		29.551	0	1	30021			54528	7352	45032	45068	59458	59458					0.06287140854374229
SPLDRMQHTL	10	Unmodified	_SPLDRMQHTL_					0	0	0			REV__SALL1|p.I1085Tfs*17|1|0.14|ENSG00000103449|chr16:51138968-51138969|-/G|frameshift_variant	REV__SALL1|p.I1085Tfs*17|1|0.14|ENSG00000103449|chr16:51138968-51138969|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	599.3037109375	2	599.305872	1196.59719	0.64982	0.00038944	-4.2788	-0.0025643	-3.629	-0.0021749	599.3031624404956	115.95	1.3134	114.58	114.3	115.61	-1.3645					49	25	3	0	0	0	0.62712	1	10803	10803		38.754	3.5529	1	203860	+		54529	17617	45033	45069	59459	59459					0.006756715145684211
SPLETQSEQG	10	Unmodified	_SPLETQSEQG_					0	0	0			REV__REG1B|p.N31S|1|0.1|ENSG00000172023|chr2:79086903-79086903|T/C|missense_variant	REV__REG1B|p.N31S|1|0.1|ENSG00000172023|chr2:79086903-79086903|T/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.2792358398438	2	538.248743	1074.48293	1.2796	0.00068875	-1.4675	-0.00078987	-0.18786	-0.00010111	538.2468783484491	138.74	0.28534	138.74	138.59	138.88	0					7	5	2	0	0	0	0.027056	1	16197	16197		20.947	0	1	23496	+		54530	29333	45034	45070	59460	59460					-0.051329397665540455
SPLFKRQIS	9	Unmodified	_SPLFKRQIS_					0	0	0			REV__ENSG00000103657|ENST00000443617|HERC1	REV__ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	OvCa9_classI_Rep3	3	538.3162231445312	2	538.316566	1074.61858	1.2512	0.00067356	-1.258	-0.00067723	-0.0068149	-3.6686E-06	538.3155795894885	71.752	2.0773	69.15	68.782	70.859	-2.6023					139	41	5	0	0	0	0.22621	1	3387	3387		71.877	5.4482	1	1426400	+		54531	17630	45035	45071	59461	59461					0.0842542460554796
SPLFLLHIN	9	Unmodified	_SPLFLLHIN_					0	0	0		ENST00000546200.5_1_12:57870467-57871594:-|nuORF	ENST00000546200.5_1_12:57870467-57871594:-|nuORF	ENST00000546200.5_1_12:57870467-57871594:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.7652587890625	2	527.30821	1052.60187	1.9926	0.0010507	1.3883	0.00073204	3.3809	0.0017828	527.3094941356283	76.405	0.48296	76.405	76.076	76.558	0					15	11	2	0	0	0	0.027462	1	7663	7663		29.15	0	1	211380			54532	13530	45036	45072	59462	59462					0.07766923719623264
SPLGAALRR	9	Unmodified	_SPLGAALRR_					0	0	0		ENST00000459985.1_1_9:139702417-139703723:+|nuORF	ENST00000459985.1_1_9:139702417-139703723:+|nuORF	ENST00000459985.1_1_9:139702417-139703723:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	470.7876892089844	2	470.787976	939.561398	0.23229	0.00010936	-0.89827	-0.0004229	-0.66598	-0.00031354	470.78745923109625	40.781	2.1682	38.071	37.601	39.769	-2.7097					104	43	4	0	0	0	0.68424	1	2136	2136		21.96	0	1	1630700			54533	12144	45037	45073	59463	59463					0.0892000211983941
SPLGEAEQRG	10	Unmodified	_SPLGEAEQRG_					0	0	0			REV__ENST00000357066.7_1_19:2072894-2072933:-|nuORF	REV__ENST00000357066.7_1_19:2072894-2072933:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.8180541992188	2	522.259445	1042.50434	0.083493	4.3605E-05	2.2664	0.0011837	2.3499	0.0012273	522.7622263560419	67.085	0.29633	64.424	64.298	64.594	-2.661					6	5	2	0	0	0	0.026849	1	5238	5238		32.812	6.1195	1	6710.9	+		54534	24779	45038	45074	59464	59464					-0.015215099471788562
SPLGEAEQRG	10	Unmodified	_SPLGEAEQRG_					0	0	0			REV__ENST00000357066.7_1_19:2072894-2072933:-|nuORF	REV__ENST00000357066.7_1_19:2072894-2072933:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	522.259445	1042.50434	-0.32749	-0.00017103	4.3164	0.0022543	3.9889	0.0020832	522.2615422183052	64.728	0.49036	64.728	64.544	65.034	0	0.24152	0.00055258	NaN	25.574	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1147300	+		54535	24779	45038	45074							-0.015215099471788562
SPLGGWQLP	9	Unmodified	_SPLGGWQLP_					0	0	0			REV__ENST00000156825.5_1_19:1576713-1576977:-|nuORF	REV__ENST00000156825.5_1_19:1576713-1576977:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	477.8216552734375	2	477.75581	953.497067	0.045182	2.1586E-05	2.0579	0.00098317	2.1031	0.0010048	477.75762050892826	81.657	0.30161	79.334	79.106	79.408	-2.3226					6	5	2	0	0	0	0.027462	1	4557	4557		24.203	0	1	12844	+		54536	23680	45039	45075	59465	59465					0.018458022430536403
SPLGLRRIL	9	Unmodified	_SPLGLRRIL_					0	0	0		YY1AP1-ARHGEF2|2|fusion;YY1AP1-ARHGEF2|3|fusion;YY1AP1-ARHGEF2|1|fusion;YY1AP1-ARHGEF2|14|fusion;YY1AP1-ARHGEF2|13|fusion;YY1AP1-ARHGEF2|8|fusion;YY1AP1-ARHGEF2|7|fusion;YY1AP1-ARHGEF2|16|fusion;YY1AP1-ARHGEF2|15|fusion;YY1AP1-ARHGEF2|4|fusion;YY1AP1-ARHGEF2|6|fusion;YY1AP1-ARHGEF2|5|fusion;YY1AP1-ARHGEF2|12|fusion;YY1AP1-ARHGEF2|11|fusion;YY1AP1-ARHGEF2|10|fusion;YY1AP1-ARHGEF2|9|fusion;ENSG00000116584|ENST00000361247|ARHGEF2;nc|ENSG00000116584|Q92974-2|ARHGEF2;nc|ENSG00000116584|Q92974-3|ARHGEF2;ARHGEF2|p.D414Lfs*135|1|0.04|ENSG00000116584|chr1:155961889-155961890|-/GTAG|frameshift_variant;ARHGEF2-GON4L|1|fusion;ARHGEF2-GON4L|2|fusion;ARHGEF2-GON4L|3|fusion	YY1AP1-ARHGEF2|2|fusion;ARHGEF2-GON4L|1|fusion	YY1AP1-ARHGEF2|2|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	512.8350219726562	2	512.834926	1023.6553	-0.33027	-0.00016937	0.00014341	7.3545E-08	-0.33012	-0.0001693	512.8347899338833	89.789	1.9382	87.709	87.337	89.275	-2.0805					86	37	4	0	0	0	0.27001	1	5546	5546		66.429	5.4573	1	487290			54537	36311;112	45040	45076	59466	59466					0.14441721222135584
SPLGSHQV	8	Unmodified	_SPLGSHQV_					0	0	0		nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2	nc|ENSG00000170921|Q9HCD6|TANC2	nc|ENSG00000170921|Q9HCD6|TANC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	412.9276123046875	2	412.716685	823.418816	-0.48051	-0.00019831	0.019031	7.8546E-06	-0.46148	-0.00019046	412.716541137646	54.917	0.71668	51.67	51.491	52.207	-3.2474					17	13	2	0	0	0	0.028476	1	3461	3461		21.96	10.449	1	29764			54538	7153	45041	45077	59467	59467					4.369657813185768E-05
SPLKHQHR	8	Unmodified	_SPLKHQHR_					0	0	0		RAE1|p.K309Lfs*44|1|0.21|ENSG00000101146|chr20:57374704-57374705|-/CTTACATGAACCTTTGTCTTTCAGCGCC|frameshift_variant;ENSG00000101146|ENST00000395841|RAE1	RAE1|p.K309Lfs*44|1|0.21|ENSG00000101146|chr20:57374704-57374705|-/CTTACATGAACCTTTGTCTTTCAGCGCC|frameshift_variant	RAE1|p.K309Lfs*44|1|0.21|ENSG00000101146|chr20:57374704-57374705|-/CTTACATGAACCTTTGTCTTTCAGCGCC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.8122863769531	2	501.783225	1001.5519	-0.278	-0.0001395	-1.6473	-0.0008266	-1.9253	-0.0009661	501.7822493040305	47.844	1.2142	44.737	44.03	45.244	-3.1077					36	23	3	0	0	0	0.028476	1	2638	2638		31.955	0.42505	1	68039			54539	2142	45042	45078	59468	59468					0.051182338343210176
SPLKKEQPL	9	Unmodified	_SPLKKEQPL_					0	0	0		ENSG00000135334|ENST00000257787|AKIRIN2	ENSG00000135334|ENST00000257787|AKIRIN2	ENSG00000135334|ENST00000257787|AKIRIN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.3119506835938	2	520.310949	1038.60735	-0.22516	-0.00011715	-0.13939	-7.2524E-05	-0.36455	-0.00018968	520.3107065507093	47.988	1.0768	44.88	44.632	45.709	-3.1077					49	20	4	0	0	0	0.094616	1	2621	2621		98.629	24.374	1	275720			54540	4367	45043	45079	59469	59469					0.08958602511415847
SPLKKEQPL	9	Unmodified	_SPLKKEQPL_					0	0	0		ENSG00000135334|ENST00000257787|AKIRIN2	ENSG00000135334|ENST00000257787|AKIRIN2	ENSG00000135334|ENST00000257787|AKIRIN2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	520.310949	1038.60735	-0.32823	-0.00017078	-0.0013378	-6.9607E-07	-0.32957	-0.00017148	520.3107409276503	47.625	0.69334	44.916	44.637	45.331	-2.7097	0.017766	8.9578E-05	NaN	98.629	33	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78147			54541	4367	45043	45079							0.08958602511415847
SPLKLLTSM	9	Oxidation (M)	_SPLKLLTSM(Oxidation (M))_		SPLKLLTSM(1)		SPLKLLTSM(140)	0	0	1		nc|ENSG00000147257|P51654-2|GPC3;ENSG00000147257|ENST00000370818|GPC3;nc|ENSG00000147257|P51654-3|GPC3	nc|ENSG00000147257|P51654-2|GPC3	nc|ENSG00000147257|P51654-2|GPC3	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.287841796875	2	503.286085	1004.55762	-1.0993	-0.00055327	0.35565	0.00017899	-0.74367	-0.00037428	503.2861127200543	93.473	1.1099	90.966	90.614	91.723	-2.5072					45	23	3	0	0	0	0.025955	2	8157	8157;8168		139.97	68.675	1	226780			54542	5347	45044	45080	59470;59471	59470		176			0.0555215151110815
SPLKLLTSM	9	Oxidation (M)	_SPLKLLTSM(Oxidation (M))_					0	0	1		nc|ENSG00000147257|P51654-2|GPC3;ENSG00000147257|ENST00000370818|GPC3;nc|ENSG00000147257|P51654-3|GPC3	nc|ENSG00000147257|P51654-2|GPC3	nc|ENSG00000147257|P51654-2|GPC3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	503.286085	1004.55762	0.095388	4.8007E-05	-0.28413	-0.000143	-0.18874	-9.4992E-05	503.28578795410743	92.173	1.0993	90.938	90.589	91.689	-1.2355	-0.0055154	-0.00061469	NaN	139.97	47	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167820			54543	5347	45044	45080				176			0.0555215151110815
SPLLLAAKDN	10	Unmodified	_SPLLLAAKDN_					0	0	0		ENSG00000165125|ENST00000359396|TRPV6	ENSG00000165125|ENST00000359396|TRPV6	ENSG00000165125|ENST00000359396|TRPV6	MULTI-MSMS	OvCa9_classI_Rep2	2	521.3004760742188	2	521.300581	1040.58661	-0.71731	-0.00037394	1.5301	0.00079764	0.81278	0.0004237	521.3013451951931	49.755	2.2298	46.995	46.325	48.555	-2.7603					109	44	4	0	0	0	0.69073	1	3228	3228		31.53	2.3598	1	840970			54544	6525	45045	45081	59472	59472					0.06794012131740601
SPLLMLLLH	9	Unmodified	_SPLLMLLLH_					0	0	0			REV__ENST00000479322.1_1_1:218607587-218614701:+|nuORF	REV__ENST00000479322.1_1_1:218607587-218614701:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.835693359375	2	518.814813	1035.61507	-0.80481	-0.00041755	-2.5641	-0.0013303	-3.3689	-0.0017478	518.8136823739064	55.866	0.12423	55.866	55.764	55.888	0					4	2	2	0	0	0	0.027433	1	4588	4588		57.811	2.3071	1	90786	+		54545	17272	45046	45082	59473	59473					0.09869038507349615
SPLLMPCPMIE	11	Unmodified	_SPLLMPCPMIE_					0	0	0			REV__UBOX5|p.A400Lfs*4|1|0.05|ENSG00000185019|chr20:3121441-3121441|C/-|frameshift_variant	REV__UBOX5|p.A400Lfs*4|1|0.05|ENSG00000185019|chr20:3121441-3121441|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	615.8043212890625	2	615.800188	1229.58582	1.1686	0.00071965	-1.301	-0.00080116	-0.13236	-8.1509E-05	615.7987511139377	145.84	1.0908	145.84	145.43	146.52	0					64	21	6	0	0	0	0.60323	1	17073	17073		44.377	0	1	671200	+		54546	22471	45047	45083	59474	59474					-0.019786098954909903
SPLLRTLSV	9	Unmodified	_SPLLRTLSV_					0	0	0		ENST00000216223.9_1_22:37523877-37524075:-|nuORF	ENST00000216223.9_1_22:37523877-37524075:-|nuORF	ENST00000216223.9_1_22:37523877-37524075:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	493.3052673339844	2	493.305667	984.596781	-0.53214	-0.00026251	0.12534	6.183E-05	-0.4068	-0.00020068	493.3056649294853	115.19	1.6282	114.14	113.7	115.33	-1.055					74	32	4	0	0	0	0.35694	1	8544	8544		56.434	3.4971	1	209660			54547	9668	45048	45084	59475	59475					0.10386619857013102
SPLMLLAR	8	Unmodified	_SPLMLLAR_					0	0	0			REV__ENST00000546093.5_1_16:86585831-86588279:-|nuORF	REV__ENST00000546093.5_1_16:86585831-86588279:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.22528076171875	2	450.770406	899.526258	0.40382	0.00018203	-0.8822	-0.00039767	-0.47838	-0.00021564	450.7698880019977	98.637	1.6883	96.259	95.624	97.313	-2.3786					49	32	2	0	0	0	0.028476	1	8775	8775		13.775	0	1	19599	+		54548	27416	45049	45085	59476	59476					0.07247623267676317
SPLMLLAR	8	Unmodified	_SPLMLLAR_					0	0	0			REV__ENST00000546093.5_1_16:86585831-86588279:-|nuORF	REV__ENST00000546093.5_1_16:86585831-86588279:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	450.770406	899.526258	3.0307	0.0013661	-4.1446	-0.0018683	-1.1139	-0.00050211	450.7700148738703	96.424	0.45798	96.424	96.21	96.668	0	0.082553	-0.0027913	NaN	8.2313	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	199970	+		54549	27416	45049	45085							0.07247623267676317
SPLPFIFHNT	10	Unmodified	_SPLPFIFHNT_					0	0	0		ENSG00000185823|ENST00000329468|NPAP1	ENSG00000185823|ENST00000329468|NPAP1	ENSG00000185823|ENST00000329468|NPAP1	MULTI-MSMS	OvCa9_classI_Rep2	2	586.8019409179688	2	586.808574	1171.60259	-5.211	-0.0030579	-4.2386	-0.0024872	-9.4496	-0.0055451	586.8058911238584	159.27	2.2635	159.04	158.53	160.79	-0.22696					99	45	3	0	0	0	0.79917	1	16288	16288		19.104	1.7386	1	107570			54550	8289	45050	45086	59477	59477					0.023657183686509597
SPLPPAVSQ	9	Unmodified	_SPLPPAVSQ_					0	0	0		NAV2|p.M254Sfs*93|1|0.17|ENSG00000166833|chr11:19880118-19880118|T/-|frameshift_variant;NAV2|p.D962Ifs*69|1|0.03|ENSG00000166833|chr11:20036003-20036004|-/CATTCTTTTTCATCTTTTTA|frameshift_variant;nc|ENSG00000166833|Q8IVL1-4|NAV2;nc|ENSG00000166833|Q8IVL1-8|NAV2;nc|ENSG00000166833|Q8IVL1-9|NAV2;nc|ENSG00000166833|Q8IVL1-10|NAV2;nc|ENSG00000166833|Q8IVL1-13|NAV2;nc|ENSG00000166833|Q8IVL1-12|NAV2;nc|ENSG00000166833|Q8IVL1-11|NAV2;ENSG00000166833|ENST00000349880|NAV2;nc|ENSG00000166833|Q8IVL1-2|NAV2;nc|ENSG00000166833|Q8IVL1|NAV2	NAV2|p.M254Sfs*93|1|0.17|ENSG00000166833|chr11:19880118-19880118|T/-|frameshift_variant	NAV2|p.M254Sfs*93|1|0.17|ENSG00000166833|chr11:19880118-19880118|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	448.24969482421875	2	448.247818	894.481082	0.97196	0.00043568	0.4361	0.00019548	1.4081	0.00063116	448.24784306694954	63.305	1.2357	63.305	63.058	64.294	0					59	30	3	0	0	0	0.44568	1	5712	5712		47.657	0	1	2740200			54551	6719	45051	45087	59478	59478					0.02962096006149295
SPLPRAPIL	9	Unmodified	_SPLPRAPIL_					0	0	0		ENST00000490909.1_1_7:100202660-100203324:+|nuORF	ENST00000490909.1_1_7:100202660-100203324:+|nuORF	ENST00000490909.1_1_7:100202660-100203324:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.30181884765625	2	482.302927	962.591301	0.49379	0.00023815	-3.8853	-0.0018739	-3.3915	-0.0016357	482.3009570429579	31.881	1.163	29.186	28.84	30.003	-2.6954					55	37	2	0	0	0	0.70177	1	751	751		17.365	0.89182	1	14793			54552	12706	45052	45088	59479	59479					0.10850941065177722
SPLSHLLAL	9	Unmodified	_SPLSHLLAL_					0	0	0			REV__ENSG00000138246|ENST00000260818|DNAJC13	REV__ENSG00000138246|ENST00000260818|DNAJC13	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.7861633300781	2	475.78711	949.559667	0.94635	0.00045026	-1.4711	-0.00069993	-0.52474	-0.00024966	475.7862320617159	113.57	1.4959	112.13	111.66	113.15	-1.4461					55	29	3	0	0	0	0.19716	1	10516	10516		76.847	0	1	158300	+		54553	19523	45053	45089	59480	59480					0.08286948311229025
SPLSSATSMG	10	Unmodified	_SPLSSATSMG_					0	0	0		chrX:97120275-97141665|89|12.45|0.12|6.67|+|1|TE_info:L1PBa1,L1PBa1_dup297,L1,LINE,donor,-,97118913,97120275|None,DIAPH2|8	chrX:97120275-97141665|89|12.45|0.12|6.67|+|1|TE_info:L1PBa1,L1PBa1_dup297,L1,LINE,donor,-,97118913,97120275|None,DIAPH2|8	chrX:97120275-97141665|89|12.45|0.12|6.67|+|1|TE_info:L1PBa1,L1PBa1_dup297,L1,LINE,donor,-,97118913,97120275|None,DIAPH2|8	MULTI-MSMS	OvCa99_classI_Rep5	1	469.2193298339844	2	469.2184	936.422247	0.9832	0.00046134	-1.639	-0.00076905	-0.6558	-0.00030771	469.2174197304959	157.93	0.44632	157.93	157.65	158.1	0					15	8	2	0	0	0	0.53885	1	18495	18495		49.442	1.7842	1	86085			54554	576	45054	45090	59481	59481					-0.04850748350486356
SPLSSHPVV	9	Unmodified	_SPLSSHPVV_					0	0	0		ENST00000523091.5_1_8:23112705-23118098:+|nuORF;ENST00000517325.5_1_8:23104188-23118109:+|nuORF;ENSG00000147457|ENST00000397677|CHMP7	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	ENST00000523091.5_1_8:23112705-23118098:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	461.7540588378906	2	461.753267	921.491981	0.43265	0.00019978	-0.32677	-0.00015089	0.10588	4.889E-05	461.75296914844904	68.088	1.9647	64.598	63.689	65.654	-3.4902					53	39	2	0	0	0	0.38529	1	5039	5039		53.351	12.573	1	533440			54555	5359	45055	45091	59482	59482					0.028094983804294316
SPLTKSISL	9	Unmodified	_SPLTKSISL_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	OvCa9_classI_Rep2	2	473.2828063964844	2	473.2844	944.554247	0.23176	0.00010969	-1.092	-0.00051685	-0.86028	-0.00040716	473.2837734695887	86.706	1.6364	85.275	84.553	86.189	-1.4311					90	31	4	0	0	0	0.010478	5	7558	7531;7546;7552;7558;7567		167.23	19.186	1	769710			54556	7133	45056	45092	59483;59484;59485;59486;59487	59486					0.079752247287729
SPLTKSISL	9	Unmodified	_SPLTKSISL_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	OvCa9_classI_Rep3	3	473.28521728515625	2	473.2844	944.554247	-0.10806	-5.1144E-05	-0.40018	-0.0001894	-0.50824	-0.00024054	473.28413493565273	87.445	1.1311	85.268	84.884	86.015	-2.1768					74	21	4	0	0	0	0.0078313	5	5266	5260;5266;5272;5280;5288		180.87	32.826	1	1460100			54557	7133	45056	45092	59488;59489;59490;59491;59492	59489					0.079752247287729
SPLTKSISL	9	Unmodified	_SPLTKSISL_					0	0	0		nc|ENSG00000170776|Q12802-4|AKAP13;ENSG00000170776|ENST00000394518|AKAP13;nc|ENSG00000170776|Q12802-2|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	nc|ENSG00000170776|Q12802-4|AKAP13	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.28326416015625	2	473.2844	944.554247	-1.6046	-0.00075941	-0.18949	-8.9681E-05	-1.794	-0.00084909	473.28426816132253	87.886	1.3113	85.275	84.916	86.227	-2.6117					86	25	4	0	0	0	0.0085876	3	7483	7483;7495;7507		176.44	17.342	1	1170500			54558	7133	45056	45092	59493;59494;59495	59493					0.079752247287729
SPLTRVIAR	9	Unmodified	_SPLTRVIAR_					0	0	0			REV__PLCE1|p.M1919Hfs*27|1|0.04|ENSG00000138193|chr10:94306554-94306555|-/T|frameshift_variant	REV__PLCE1|p.M1919Hfs*27|1|0.04|ENSG00000138193|chr10:94306554-94306555|-/T|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.27166748046875	2	506.816733	1011.61891	2.5773	0.0013062	0.89609	0.00045416	3.4734	0.0017604	506.8161067198984	75.744	0.39056	75.744	75.523	75.913	0					13	9	2	0	0	0	0.027462	1	7546	7546		25.574	3.6142	1	470310	+		54559	19521	45057	45093	59496	59496					0.11356844325405291
SPLVVTQR	8	Unmodified	_SPLVVTQR_					0	0	0			REV__ENST00000392038.6_1_19:40739207-40739384:-|nuORF	REV__ENST00000392038.6_1_19:40739207-40739384:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	450.27001953125	2	450.269084	898.523616	1.9084	0.0008593	-1.9638	-0.00088423	-0.055366	-2.4929E-05	450.26807810544716	61.38	1.5642	58.311	57.573	59.137	-3.0685					65	43	2	0	0	0	0.75241	1	2162	2162		25.45	0	1	26008	+		54560	25245	45058	45094	59497	59497					0.07029491134369437
SPLYHLGATK	10	Unmodified	_SPLYHLGATK_					0	0	0		ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	ENSG00000266714|ENST00000645453|MYO15B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.7650756835938	2	543.800749	1085.58694	-0.75638	-0.00041132	-0.5764	-0.00031344	-1.3328	-0.00072477	543.7999464282474	51.737	0.65662	48.563	48.372	49.028	-3.1734					16	12	2	0	0	0	0.026802	1	3103	3103		26.693	0	1	20827			54561	9529	45059	45095	59498	59498					0.04757431851612637
SPMIPLGIL	9	Unmodified	_SPMIPLGIL_					0	0	0			REV__ENST00000334746.9_2_14:93761061-93761256:-|nuORF	REV__ENST00000334746.9_2_14:93761061-93761256:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.783447265625	2	470.780439	939.546325	-0.66865	-0.00031479	3.9896	0.0018782	3.3209	0.0015634	470.7822410343575	72.803	1.6374	69.407	69.058	70.696	-3.3961					62	33	3	0	0	0	0.34496	1	5618	5618		57.811	0	1	717940	+		54562	24572	45060	45096	59499	59499					0.07413374207646939
SPMTRSRNT	9	Unmodified	_SPMTRSRNT_					0	0	0		ENST00000376770.5_1_1:11718353-11718645:+|nuORF	ENST00000376770.5_1_1:11718353-11718645:+|nuORF	ENST00000376770.5_1_1:11718353-11718645:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.80615234375	2	525.261465	1048.50838	-1.7779	-0.00093385	-1.5707	-0.00082502	-3.3486	-0.0017589	525.2605684818853	118.53	1.7224	117.18	116.73	118.46	-1.3444					55	32	2	0	0	0	0.027446	1	11090	11090		42.864	17.29	1	82182			54563	11079	45061	45097	59500	59500					-0.013937437251115625
SPNFDGWFKT	10	Unmodified	_SPNFDGWFKT_					0	0	0		ENSG00000174839|ENST00000311128|DENND6A	ENSG00000174839|ENST00000311128|DENND6A	ENSG00000174839|ENST00000311128|DENND6A	MULTI-SECPEP	OvCa9_classI_Rep3	3	599.3036499023438	2	599.780013	1197.54547	1.396	0.00083727	3.2477	0.0019479	4.6437	0.0027852	599.781817895704	115.44	0.54281	114.4	114.21	114.75	-1.0414					15	10	2	0	0	0	0.027001	1	8611	8611		42.864	13.715	1	27029			54564	7495	45062	45098	59501	59501					-0.04539748907723151
SPNGHRPQL	9	Unmodified	_SPNGHRPQL_					0	0	0		nc|ENSG00000172661|Q9Y4E1-5|WASHC2C;nc|ENSG00000172661|Q9Y4E1-3|WASHC2C;nc|ENSG00000172661|Q9Y4E1-6|WASHC2C;nc|ENSG00000172661|Q9Y4E1-2|WASHC2C;nc|ENSG00000172661|Q9Y4E1-1|WASHC2C;nc|ENSG00000172661|Q9Y4E1-4|WASHC2C;nc|ENSG00000099290|Q641Q2-2|WASHC2A;ENSG00000172661|ENST00000623400|WASHC2C;ENSG00000099290|ENST00000282633|WASHC2A	nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.2641906738281	2	503.264865	1004.51518	-0.74646	-0.00037567	1.4156	0.00071241	0.66912	0.00033674	503.2648381316107	39.637	1.6767	36.687	36.272	37.949	-2.9503					68	32	3	0	0	0	0.35444	1	1648	1648		56.721	15.943	1	313720			54565	1966	45063	45099	59502	59502					0.013099372177407531
SPNGTIRNIL	10	Unmodified	_SPNGTIRNIL_					0	0	0		ENSG00000138413|ENST00000345146|IDH1;ENST00000462386.5_1_2:209112975-209118617:-|nuORF;nc|ENSG00000182054|P48735-2|IDH2;ENSG00000182054|ENST00000330062|IDH2	ENSG00000138413|ENST00000345146|IDH1;nc|ENSG00000182054|P48735-2|IDH2	nc|ENSG00000182054|P48735-2|IDH2	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.8124389648438	2	542.809105	1083.60366	0.75022	0.00040723	-0.45568	-0.00024735	0.29454	0.00015988	542.8089081229622	85.615	0.7338	82.969	82.66	83.394	-2.6463					49	14	4	0	0	0	0.12738	1	7210	7210		106.68	26.97	1	423680			54566	4687;7964	45064	45100	59503	59503					0.06519932737569434
SPNGTIRNIL	10	Unmodified	_SPNGTIRNIL_					0	0	0		ENSG00000138413|ENST00000345146|IDH1;ENST00000462386.5_1_2:209112975-209118617:-|nuORF;nc|ENSG00000182054|P48735-2|IDH2;ENSG00000182054|ENST00000330062|IDH2	ENSG00000138413|ENST00000345146|IDH1;nc|ENSG00000182054|P48735-2|IDH2	nc|ENSG00000182054|P48735-2|IDH2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.809105	1083.60366	-1.5843	-0.00085999	0.79417	0.00043108	-0.79016	-0.00042891	542.8098301325984	84.31	1.1287	82.763	82.172	83.301	-1.5462	-0.13434	0.00028221	NaN	106.68	59	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260140			54567	4687;7964	45064	45100							0.06519932737569434
SPNGTIRNIL	10	Unmodified	_SPNGTIRNIL_					0	0	0		ENSG00000138413|ENST00000345146|IDH1;ENST00000462386.5_1_2:209112975-209118617:-|nuORF;nc|ENSG00000182054|P48735-2|IDH2;ENSG00000182054|ENST00000330062|IDH2	ENSG00000138413|ENST00000345146|IDH1;nc|ENSG00000182054|P48735-2|IDH2	nc|ENSG00000182054|P48735-2|IDH2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	542.809105	1083.60366	-0.85222	-0.00046259	0.60486	0.00032832	-0.24736	-0.00013427	542.8093739640138	85.181	0.93761	82.961	82.548	83.486	-2.2204	0.063262	7.6695E-05	NaN	106.68	49	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	540330			54568	4687;7964	45064	45100							0.06519932737569434
SPNLRLLDL	9	Unmodified	_SPNLRLLDL_					0	0	0		ENST00000526524.5_1_8:145579333-145580709:-|nuORF;nc|ENSG00000182325|Q8N531-2|FBXL6;ENSG00000182325|ENST00000331890|FBXL6	ENST00000526524.5_1_8:145579333-145580709:-|nuORF	ENST00000526524.5_1_8:145579333-145580709:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	520.8084716796875	2	520.808574	1039.60259	-0.75387	-0.00039262	-0.26291	-0.00013692	-1.0168	-0.00052955	520.8086564098226	117.01	1.684	116.88	116.47	118.15	-0.12869					113	33	7	0	0	0	0.094791	6	11199	11189;11194;11199;11211;11224;11230		98.582	16.573	1	478140			54569	7993	45065	45101	59504;59505;59506;59507;59508;59509	59506					0.08437718368668357
SPNLRLLDL	9	Unmodified	_SPNLRLLDL_					0	0	0		ENST00000526524.5_1_8:145579333-145580709:-|nuORF;nc|ENSG00000182325|Q8N531-2|FBXL6;ENSG00000182325|ENST00000331890|FBXL6	ENST00000526524.5_1_8:145579333-145580709:-|nuORF	ENST00000526524.5_1_8:145579333-145580709:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	520.80810546875	2	520.808574	1039.60259	-0.35534	-0.00018507	-0.76826	-0.00040012	-1.1236	-0.00058518	520.8083888722493	117.96	1.486	116.93	116.54	118.02	-1.0324					98	29	6	0	0	0	0.040625	7	8884	8868;8878;8884;8890;8896;8902;8909		126.24	14.135	1	547170			54570	7993	45065	45101	59510;59511;59512;59513;59514;59515;59516	59512					0.08437718368668357
SPNLRLLDL	9	Unmodified	_SPNLRLLDL_					0	0	0		ENST00000526524.5_1_8:145579333-145580709:-|nuORF;nc|ENSG00000182325|Q8N531-2|FBXL6;ENSG00000182325|ENST00000331890|FBXL6	ENST00000526524.5_1_8:145579333-145580709:-|nuORF	ENST00000526524.5_1_8:145579333-145580709:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.8082885742188	2	520.808574	1039.60259	-1.3681	-0.00071254	0.72324	0.00037667	-0.6449	-0.00033587	520.8088352465354	118.21	1.5638	116.87	116.47	118.03	-1.3444					69	29	3	0	0	0	0.047422	3	11096	11060;11084;11096		120.31	29.041	1	587660			54571	7993	45065	45101	59517;59518;59519	59519					0.08437718368668357
SPNNDFDG	8	Unmodified	_SPNNDFDG_					0	0	0			REV__tr|A0A7D6ZRV7|A0A7D6ZRV7_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13650PE=4SV=1	REV__tr|A0A7D6ZRV7|A0A7D6ZRV7_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13650PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1716613769531	2	433.169764	864.324976	2.6506	0.0011482	1.0551	0.00045706	3.7058	0.0016052	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.7594	1	1474	1474		21.96	0	1	60065	+		54572	32168	45066	45102	59520	59520					-0.11261394235134503
SPNQARAQAAL	11	Unmodified	_SPNQARAQAAL_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	OvCa9_classI_Rep2	2	563.8013916015625	2	563.801811	1125.58907	-0.85086	-0.00047971	0.74218	0.00041844	-0.10868	-6.1275E-05	563.802079183741	50.165	1.2394	47.371	47.033	48.272	-2.794					64	24	4	0	0	0	0.064268	4	3226	3220;3226;3232;3241		106.88	31.837	1	370940			54573	962	45067	45103	59521;59522;59523;59524	59522					0.03129860589410782
SPNQARAQAAL	11	Unmodified	_SPNQARAQAAL_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:797434-805231:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.801513671875	2	563.801811	1125.58907	-0.1125	-6.343E-05	-0.2839	-0.00016007	-0.39641	-0.00022349	563.8016112397572	50.404	1.6335	47.262	46.82	48.453	-3.1416					91	31	4	0	0	0	0.06371	4	2912	2888;2899;2912;2924		131.12	37.973	1	2418100			54574	962	45067	45103	59525;59526;59527;59528	59527					0.03129860589410782
SPNSKVNTL	9	Unmodified	_SPNSKVNTL_					0	0	0		HADHA|p.T393Vfs*9|1|0.03|ENSG00000084754|chr2:26204106-26204107|-/CAATCATGACA|frameshift_variant;ENSG00000084754|ENST00000380649|HADHA	HADHA|p.T393Vfs*9|1|0.03|ENSG00000084754|chr2:26204106-26204107|-/CAATCATGACA|frameshift_variant	HADHA|p.T393Vfs*9|1|0.03|ENSG00000084754|chr2:26204106-26204107|-/CAATCATGACA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	480.2620849609375	2	480.261456	958.50836	-0.66303	-0.00031843	0.6869	0.00032989	0.023866	1.1462E-05	480.2616137718303	46.708	1.2394	43.998	43.696	44.935	-2.7097					43	24	3	0	0	0	0.075543	2	2803	2803;2809		104.06	29.013	1	180350			54575	1720	45068	45104	59529;59530	59529					0.027445795465382616
SPNSKVNTL	9	Unmodified	_SPNSKVNTL_					0	0	0		HADHA|p.T393Vfs*9|1|0.03|ENSG00000084754|chr2:26204106-26204107|-/CAATCATGACA|frameshift_variant;ENSG00000084754|ENST00000380649|HADHA	HADHA|p.T393Vfs*9|1|0.03|ENSG00000084754|chr2:26204106-26204107|-/CAATCATGACA|frameshift_variant	HADHA|p.T393Vfs*9|1|0.03|ENSG00000084754|chr2:26204106-26204107|-/CAATCATGACA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.2621765136719	2	480.261456	958.50836	-0.20179	-9.6911E-05	0.085067	4.0855E-05	-0.11672	-5.6057E-05	480.26138226800697	46.911	1.9338	43.839	43.501	45.435	-3.0724					64	37	4	0	0	0	0.046778	3	2486	2486;2498;2525		120.87	24.327	1	1060000			54576	1720	45068	45104	59531;59532;59533	59531					0.027445795465382616
SPNSSNPII	9	Unmodified	_SPNSSNPII_					0	0	0		ENSG00000204628|ENST00000512805|RACK1;ENST00000502548.5_1_5:180666387-180669331:-|nuORF;ENST00000514183.5_1_5:180665952-180670713:-|nuORF;ENST00000515417.5_1_5:180666387-180668514:-|nuORF	ENSG00000204628|ENST00000512805|RACK1	ENSG00000204628|ENST00000512805|RACK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.782470703125	2	464.740357	927.46616	-0.64431	-0.00029943	1.4267	0.00066305	0.7824	0.00036361	464.7407689793759	52.531	0.8564	49.323	48.842	49.698	-3.208					25	16	2	0	0	0	0.027426	1	3183	3183		35.618	7.736	1	60121			54577	9013	45069	45105	59534	59534					-0.0004739586186133238
SPPAPGHH	8	Unmodified	_SPPAPGHH_					0	0	0			REV__ENSG00000179094|ENST00000317276|PER1	REV__ENSG00000179094|ENST00000317276|PER1	MULTI-MSMS	OvCa99_classI_Rep5	1	400.1987609863281	2	400.195919	798.377286	1.1852	0.00047431	3.3542	0.0013423	4.5394	0.0018166	400.1972113470581	56.114	1.4118	56.114	55.682	57.093	0					74	33	3	0	0	0	0.75991	1	4712	4712		21.702	0	1	12597000	+		54578	22100	45070	45106	59535	59535					-0.029967663108664055
SPPFFKRVM	9	Unmodified	_SPPFFKRVM_					0	0	0		ENST00000244745.3_2_6:21596641-21596935:+|nuORF	ENST00000244745.3_2_6:21596641-21596935:+|nuORF	ENST00000244745.3_2_6:21596641-21596935:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.8357543945312	2	554.802237	1107.58992	2.7096	0.0015033	1.8243	0.0010121	4.534	0.0025155	554.803021574584	75.264	0.35696	75.264	75.087	75.444	0					15	8	3	0	0	0	0.027462	1	7484	7484		30.504	0	1	281520			54579	9770	45071	45107	59536	59536					0.040429837047668116
SPPGFKRFS	9	Unmodified	_SPPGFKRFS_					0	0	0		chr8:144426979-144427082|95|31.08|0.2|7.31|-|2|TE_info:AluSx,AluSx_dup52809,Alu,SINE,donor,+,144427082,144427326|VPS28,None|1	chr8:144426979-144427082|95|31.08|0.2|7.31|-|2|TE_info:AluSx,AluSx_dup52809,Alu,SINE,donor,+,144427082,144427326|VPS28,None|1	chr8:144426979-144427082|95|31.08|0.2|7.31|-|2|TE_info:AluSx,AluSx_dup52809,Alu,SINE,donor,+,144427082,144427326|VPS28,None|1	MULTI-MSMS	OvCa9_classI_Rep2	2	511.7729797363281	2	511.774534	1021.53451	-0.32285	-0.00016523	-3.8435	-0.001967	-4.1663	-0.0021322	511.7724547272684	39.921	1.0414	37.211	37.002	38.044	-2.7097					38	20	2	0	0	0	0.33652	1	1991	1991		58.782	0.97068	1	268990			54580	542	45072	45108	59537	59537					0.02460893508657591
SPPKIALVLS	10	Unmodified	_SPPKIALVLS_					0	0	0			REV__ENST00000526104.5_2_11:214922-215090:+|nuORF	REV__ENST00000526104.5_2_11:214922-215090:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.82275390625	2	512.823692	1023.63283	0.59314	0.00030417	-3.1034	-0.0015915	-2.5102	-0.0012873	512.8219569294148	33.376	0.94036	30.671	30.392	31.332	-2.7055					41	18	3	0	0	0	0.74374	1	893	893		25.574	4.6271	1	82230	+		54581	27129	45073	45109	59538	59538					0.12196077033843267
SPPKWKLI	8	Unmodified	_SPPKWKLI_					0	0	0			REV__nc|ENSG00000171105|P06213-2|INSR;REV__nc|ENSG00000111880|O60942-2|RNGTT	REV__nc|ENSG00000171105|P06213-2|INSR	MULTI-MSMS	OvCa9_classI_Rep3	3	484.7984619140625	2	484.80002	967.585488	-0.83207	-0.00040339	-4.1359	-0.0020051	-4.968	-0.0024085	484.7981247180956	97.675	2.4444	95.916	95.105	97.55	-1.7595					95	47	4	0	0	0	0.70469	1	6505	6505		42.396	1.618	1	1805800	+		54582	21592;18068	45074	45110	59539	59539					0.10039842553510425
SPPPCRSTM	9	Carbamidomethyl (C),Oxidation (M)	_SPPPC(Carbamidomethyl (C))RSTM(Oxidation (M))_	SPPPC(1)RSTM	SPPPCRSTM(1)	SPPPC(85)RSTM	SPPPCRSTM(85)	0	1	1			REV__ENST00000454558.2_2_2:97216348-97216839:+|nuORF	REV__ENST00000454558.2_2_2:97216348-97216839:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.2692260742188	2	524.731151	1047.44775	-0.84729	-0.0004446	-2.1002	-0.001102	-2.9475	-0.0015466	525.2322667024903	69.022	0.63808	65.531	65.362	66	-3.4902					18	12	2	0	0	0	0.027295	1	5191	5191		84.916	10.941	1	31822	+		54583	26005	45075	45111	59540	59540	320	584			-0.07407597099722807
SPPPPHLF	8	Unmodified	_SPPPPHLF_					0	0	0			REV__ENST00000248975.5_1_22:32352775-32352853:+|nuORF	REV__ENST00000248975.5_1_22:32352775-32352853:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	446.24127197265625	2	446.239796	890.465038	0.27319	0.00012191	-0.60751	-0.00027109	-0.33431	-0.00014918	446.23939330441766	67.815	1.0355	67.815	67.528	68.564	0					63	25	4	0	0	0	0.45832	1	6355	6355		81.716	12.623	1	4338400	+		54584	23849	45076	45112	59541	59541					0.015424345598944456
SPPPPQTR	8	Unmodified	_SPPPPQTR_					0	0	0		ENST00000511802.5_1_5:10353900-10378875:+|nuORF	ENST00000511802.5_1_5:10353900-10378875:+|nuORF	ENST00000511802.5_1_5:10353900-10378875:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	439.68939208984375	2	440.237784	878.461016	0.97765	0.0004304	-0.8524	-0.00037526	0.12525	5.514E-05	440.2373457250099	58.676	0.9618	58.676	58.194	59.156	0					31	23	2	0	0	0	0.028476	1	4974	4974		29.15	9.1528	1	714700			54585	12988	45077	45113	59542	59542					0.01692345066192047
SPPPRVFRSV	10	Unmodified	_SPPPRVFRSV_					0	0	0			REV__nc|ENSG00000135870|Q5TC82-2|RC3H1	REV__nc|ENSG00000135870|Q5TC82-2|RC3H1	MULTI-MSMS	OvCa9_classI_Rep4_	4	571.3283081054688	2	571.327465	1140.64038	0.29022	0.00016581	-1.299	-0.00074214	-1.0088	-0.00057633	571.3265621465952	142	1.046	140.54	140.24	141.28	-1.4627					43	19	3	0	0	0	0.71173	1	13898	13898		29.17	1.2878	1	89796	+		54586	19330	45078	45114	59543	59543					0.07568229354114919
SPPREARLL	9	Unmodified	_SPPREARLL_					0	0	0		ENST00000544278.2_1_19:49606745-49607195:+|nuORF	ENST00000544278.2_1_19:49606745-49607195:+|nuORF	ENST00000544278.2_1_19:49606745-49607195:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.797119140625	2	519.806365	1037.59818	0.43054	0.0002238	4.1254	0.0021444	4.556	0.0023682	519.8081771606629	80.064	0.29733	77.724	77.563	77.861	-2.3399					9	4	3	0	0	0	0.027462	1	4356	4356		37.812	9.9293	1	21223			54587	13504	45079	45115	59544	59544					0.08088253945743418
SPPSAARHSL	10	Unmodified	_SPPSAARHSL_					0	0	0		ENSG00000106511|ENST00000262041|MEOX2	ENSG00000106511|ENST00000262041|MEOX2	ENSG00000106511|ENST00000262041|MEOX2	MULTI-MSMS	OvCa9_classI_Rep2	2	511.7733154296875	2	511.772522	1021.53049	-0.32285	-0.00016523	0.086734	4.4388E-05	-0.23612	-0.00012084	511.7724547272684	39.921	1.0414	37.211	37.002	38.044	-2.7097					38	20	2	0	0	0	0.38315	4	1980	1974;1980;1985;1997		70.816	19.481	1	268990			54588	2559	45080	45116	59545;59546;59547;59548	59546					0.020588040149505105
SPPSAARHSL	10	Unmodified	_SPPSAARHSL_					0	0	0		ENSG00000106511|ENST00000262041|MEOX2	ENSG00000106511|ENST00000262041|MEOX2	ENSG00000106511|ENST00000262041|MEOX2	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.7719421386719	2	511.772522	1021.53049	-0.75525	-0.00038651	0.32251	0.00016505	-0.43274	-0.00022146	511.77268751602037	40.296	1.7677	37.342	37.112	38.88	-2.9541					58	33	2	0	0	0	0.18931	4	1724	1715;1724;1737;1750		96.034	9.573	1	1285800			54589	2559	45080	45116	59549;59550;59551;59552	59550					0.020588040149505105
SPPTSCSSSCL	11	Unmodified	_SPPTSCSSSCL_					0	0	0		ENST00000509448.5_1_7:135347283-135373658:+|nuORF;ENST00000507606.2_1_7:135347283-135358947:+|nuORF	ENST00000509448.5_1_7:135347283-135373658:+|nuORF	ENST00000509448.5_1_7:135347283-135373658:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.2869873046875	2	534.720449	1067.42635	-1.8472	-0.00098772	-1.6214	-0.00086701	-3.4686	-0.0018547	534.7197369041575	54.117	0.6655	50.869	50.671	51.336	-3.2474					15	12	2	0	0	0	0.02557	1	3335	3335		39.253	18.771	1	22518			54590	12931	45081	45117	59553	59553					-0.10467026919104683
SPQDPRPLS	9	Unmodified	_SPQDPRPLS_					0	0	0		ENST00000482433.1_1_19:2216201-2220604:+|nuORF;ENSG00000104885|ENST00000398665|DOT1L;nc|ENSG00000104885|Q8TEK3-1|DOT1L	ENST00000482433.1_1_19:2216201-2220604:+|nuORF	ENST00000482433.1_1_19:2216201-2220604:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.75372314453125	2	498.759081	995.503609	0.4928	0.00024579	1.3625	0.00067956	1.8553	0.00092535	498.75970499510095	141.07	0.80516	141.07	140.83	141.64	0					25	15	2	0	0	0	0.027462	1	16468	16468		29.15	0	1	157980			54591	12572	45082	45118	59554	59554					0.005676954037653559
SPQGRVMTI	9	Oxidation (M)	_SPQGRVM(Oxidation (M))TI_		SPQGRVM(1)TI		SPQGRVM(100)TI	0	0	1		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OvCa9_classI_Rep2	2	502.7628479003906	2	502.763309	1003.51206	-1.7574	-0.00088355	1.9039	0.00095719	0.14647	7.3637E-05	502.7641955105431	52.329	1.7314	49.516	48.996	50.728	-2.8129					70	34	3	0	0	0	0.075618	5	3478	3467;3472;3478;3484;3491		104.01	34.386	1	290610			54592	7018	45083	45119	59555;59556;59557;59558;59559	59557		214			0.01044926048734851
SPQGRVMTI	9	Oxidation (M)	_SPQGRVM(Oxidation (M))TI_		SPQGRVM(1)TI		SPQGRVM(110)TI	0	0	1		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.7646789550781	2	502.763309	1003.51206	-0.9446	-0.00047491	-0.52187	-0.00026238	-1.4665	-0.00073729	502.7627934318169	52.483	1.8154	49.275	48.792	50.607	-3.208					66	35	3	0	0	0	0.056671	2	3165	3139;3165		114.89	21.848	1	2006800			54593	7018	45083	45119	59560;59561	59561		214			0.01044926048734851
SPQGRVMTI	9	Unmodified	_SPQGRVMTI_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OvCa9_classI_Rep2	2	494.7644958496094	2	494.765852	987.51715	-0.59685	-0.0002953	-2.3172	-0.0011465	-2.9141	-0.0014418	494.76435773430484	67.685	1.2835	65.024	64.298	65.581	-2.661					63	25	3	0	0	0	0.16264	1	5304	5304		82.75	11.455	1	473990			54594	7018	45083	45120	59562	59562					0.022892299113550507
SPQGRVMTI	9	Unmodified	_SPQGRVMTI_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.7672119140625	2	494.765852	987.51715	0.5334	0.00026391	-1.1134	-0.00055085	-0.57995	-0.00028694	494.7652083816197	68.443	0.83561	64.953	64.671	65.507	-3.4902					55	16	4	0	0	0	0.2077	1	5071	5071		75.043	3.7476	1	1917800			54595	7018	45083	45120	59563	59563					0.022892299113550507
SPQKVTLYL	9	Unmodified	_SPQKVTLYL_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46314678-46340855:-|nuORF	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MULTI-MSMS	OvCa9_classI_Rep2	2	524.8055419921875	2	524.8055	1047.59645	0.75625	0.00039688	-1.5948	-0.00083698	-0.83859	-0.0004401	524.8046333600537	91.954	3.2465	90.719	90.272	93.519	-1.2355					182	62	5	0	0	0	0.046778	4	8218	8199;8206;8218;8239		120.87	24.767	1	5304800			54596	6050	45084	45121	59564;59565;59566;59567	59566					0.07455200137133033
SPQKVTLYL	9	Unmodified	_SPQKVTLYL_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46314678-46340855:-|nuORF	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MULTI-MSMS	OvCa9_classI_Rep3	3	524.8052368164062	2	524.8055	1047.59645	-1.7559	-0.00092148	0.090516	4.7503E-05	-1.6653	-0.00087398	524.8054976909301	92.637	3.4	90.676	90.197	93.597	-1.9617					189	68	5	0	0	0	0.03923	6	5884	5866;5884;5896;5902;5921;5927		127.46	24.344	1	8798500			54597	6050	45084	45121	59568;59569;59570;59571;59572;59573	59569					0.07455200137133033
SPQKVTLYL	9	Unmodified	_SPQKVTLYL_					0	0	0		ENSG00000160255|ENST00000652462|ITGB2;ENST00000498666.5_1_21:46314678-46340855:-|nuORF	ENSG00000160255|ENST00000652462|ITGB2	ENSG00000160255|ENST00000652462|ITGB2	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.8057861328125	2	524.8055	1047.59645	-1.2668	-0.00066484	0.27215	0.00014283	-0.99469	-0.00052202	524.8056155005146	93.196	3.165	90.689	90.412	93.577	-2.5072					175	64	5	0	0	0	0.055627	9	8124	8101;8112;8124;8136;8148;8160;8186;8199;8212		115.49	23.516	1	7764100			54598	6050	45084	45121	59574;59575;59576;59577;59578;59579;59580;59581;59582	59576					0.07455200137133033
SPQNGILIAL	10	Unmodified	_SPQNGILIAL_					0	0	0			REV__chrX:53176622-53179745|352|11.66|0.0|20.15|-|2|KDM5C,KDM5C|1	REV__chrX:53176622-53179745|352|11.66|0.0|20.15|-|2|KDM5C,KDM5C|1	MULTI-MSMS	OvCa9_classI_Rep2	2	513.3028564453125	2	513.303124	1024.5917	-0.90798	-0.00046607	0.2818	0.00014465	-0.62618	-0.00032142	513.303241645798	102.61	2.5703	101.93	101.49	104.06	-0.68459					128	51	4	0	0	0	0.41408	1	9466	9466		66.429	5.4573	1	1179700	+		54599	16141	45085	45122	59583	59583					0.0803831599437217
SPQNLRLML	9	Oxidation (M)	_SPQNLRLM(Oxidation (M))L_		SPQNLRLM(1)L		SPQNLRLM(96)L	0	0	1		PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant;ENSG00000205038|ENST00000378402|PKHD1L1	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	544.2992553710938	2	544.300059	1086.58556	0.37477	0.00020399	-0.12484	-6.7951E-05	0.24993	0.00013604	544.299673732713	92.131	1.7141	90.896	90.272	91.987	-1.2355					65	23	4	0	0	0	0.10363	1	8179	8179		96.19	11.275	1	540920			54600	9047	45086	45123	59584	59584		271			0.045734744911896996
SPQNLRLML	9	Oxidation (M)	_SPQNLRLM(Oxidation (M))L_		SPQNLRLM(1)L		SPQNLRLM(88)L	0	0	1		PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant;ENSG00000205038|ENST00000378402|PKHD1L1	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	544.2991943359375	2	544.300059	1086.58556	-1.4048	-0.00076465	0.69578	0.00037871	-0.70906	-0.00038594	544.3002102005513	92.774	1.1692	90.813	90.56	91.729	-1.9617					64	23	4	0	0	0	0.13482	3	5898	5892;5898;5910		87.754	13.961	1	877200			54601	9047	45086	45123	59585;59586;59587	59586		271			0.045734744911896996
SPQNLRLML	9	Oxidation (M)	_SPQNLRLM(Oxidation (M))L_		SPQNLRLM(1)L		SPQNLRLM(72)L	0	0	1		PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant;ENSG00000205038|ENST00000378402|PKHD1L1	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.2994384765625	2	544.300059	1086.58556	-1.2125	-0.00065995	1.1524	0.00062725	-0.060063	-3.2692E-05	544.3005382052795	93.345	0.9722	90.838	90.513	91.485	-2.5072					59	20	4	0	0	0	0.22621	1	8156	8156		71.877	8.5712	1	699340			54602	9047	45086	45123	59588	59588		271			0.045734744911896996
SPQNLRLML	9	Unmodified	_SPQNLRLML_					0	0	0		PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant;ENSG00000205038|ENST00000378402|PKHD1L1	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	536.3029174804688	2	536.302601	1070.59065	-1.9124	-0.0010256	1.5659	0.00083979	-0.34649	-0.00018582	536.3034459156299	100.86	1.1897	100.1	99.674	100.86	-0.76401					47	23	3	0	0	0	0.42676	3	9238	9229;9238;9245		49.442	8.6634	1	251080			54603	9047	45086	45124	59589;59590;59591	59590					0.05817778353821268
SPQNLRLML	9	Unmodified	_SPQNLRLML_					0	0	0		PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant;ENSG00000205038|ENST00000378402|PKHD1L1	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	536.3043212890625	2	536.302601	1070.59065	0.17096	9.1684E-05	-0.19059	-0.00010221	-0.019632	-1.0529E-05	536.3023063408742	101.69	1.2577	100.16	99.74	101	-1.5211					47	23	3	0	0	0	0.44568	1	6966	6966		47.657	8.8512	1	222060			54604	9047	45086	45124	59592	59592					0.05817778353821268
SPQNLRLML	9	Unmodified	_SPQNLRLML_					0	0	0		PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant;ENSG00000205038|ENST00000378402|PKHD1L1	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.3057250976562	2	536.302601	1070.59065	-0.91917	-0.00049295	0.87338	0.00046839	-0.045796	-2.456E-05	536.3029528483218	102.32	1.6716	100.12	99.421	101.09	-2.1994					63	31	3	0	0	0	0.42676	1	9218	9218		49.442	5.0644	1	283090			54605	9047	45086	45124	59593	59593					0.05817778353821268
SPQNLRNTL	9	Unmodified	_SPQNLRNTL_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.P9131Lfs*70|1|0.1|ENSG00000181143|chr19:8949378-8949379|-/CATCCTTCCACAA|frameshift_variant;MUC16|p.F9515*|1|0.24|ENSG00000181143|chr19:8948225-8948226|AA/-|frameshift_variant;MUC16|p.T9803Vfs*24|1|0.05|ENSG00000181143|chr19:8947363-8947364|-/GGAC|frameshift_variant;MUC16|p.D9802Vfs*25|1|0.05|ENSG00000181143|chr19:8947365-8947366|-/ATCAACAACACCCAACTGGGTAGAAA|frameshift_variant;MUC16|p.E8637Kfs*10|1|0.09|ENSG00000181143|chr19:8950858-8950861|TCTC/-|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.7860717773438	2	521.78563	1041.55671	-0.29886	-0.00015594	-0.86045	-0.00044897	-1.1593	-0.00060491	521.7850100413037	61.722	1.3932	58.265	57.866	59.259	-3.4577					64	28	3	0	0	0	0.1149	1	4252	4252		93.143	25.65	1	607760			54606	7920	45087	45125	59594	59594					0.037590731864384
SPQPQRAQL	9	Unmodified	_SPQPQRAQL_					0	0	0		nc|ENSG00000109689|Q9P246-3|STIM2;ENSG00000109689|ENST00000467087|STIM2;nc|ENSG00000109689|Q9P246-2|STIM2	nc|ENSG00000109689|Q9P246-3|STIM2	nc|ENSG00000109689|Q9P246-3|STIM2	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.7814331054688	2	512.780348	1023.54614	-2.0862	-0.0010698	1.2523	0.00064218	-0.83389	-0.0004276	512.7809960027776	49.788	2.1086	46.646	46.147	48.256	-3.1416					88	40	4	0	0	0	0.2077	1	2824	2824		75.043	6.2565	1	604860			54607	2728	45088	45126	59595	59595					0.03531090531987502
SPQPRLIYL	9	Unmodified	_SPQPRLIYL_					0	0	0		ENST00000495562.5_1_1:202910703-202913132:-|nuORF;ENSG00000159346|ENST00000340990|ADIPOR1	ENST00000495562.5_1_1:202910703-202913132:-|nuORF	ENST00000495562.5_1_1:202910703-202913132:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	543.8187866210938	2	543.818941	1085.62333	-1.415	-0.00076952	0.57994	0.00031538	-0.83509	-0.00045414	543.8193248422483	102.3	1.5803	101.62	101.24	102.82	-0.68459					104	31	5	0	0	0	0.2422	4	9423	9417;9423;9429;9443		69.628	10.677	1	1306500			54608	6005	45089	45127	59596;59597;59598;59599	59597					0.08394308748324875
SPQPRLIYL	9	Unmodified	_SPQPRLIYL_					0	0	0		ENST00000495562.5_1_1:202910703-202913132:-|nuORF;ENSG00000159346|ENST00000340990|ADIPOR1	ENST00000495562.5_1_1:202910703-202913132:-|nuORF	ENST00000495562.5_1_1:202910703-202913132:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	543.8203125	2	543.818941	1085.62333	-0.007374	-4.0101E-06	-0.95373	-0.00051865	-0.9611	-0.00052267	543.8184281162435	103.22	1.4687	101.79	101.45	102.92	-1.4347					92	27	4	0	0	0	0.1804	3	7153	7132;7138;7153		79.713	8.4169	1	1651100			54609	6005	45089	45127	59600;59601;59602	59602					0.08394308748324875
SPQPRLIYL	9	Unmodified	_SPQPRLIYL_					0	0	0		ENST00000495562.5_1_1:202910703-202913132:-|nuORF;ENSG00000159346|ENST00000340990|ADIPOR1	ENST00000495562.5_1_1:202910703-202913132:-|nuORF	ENST00000495562.5_1_1:202910703-202913132:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.8177490234375	2	543.818941	1085.62333	-1.0476	-0.0005697	0.4417	0.0002402	-0.6059	-0.0003295	543.8192276601923	103.89	1.4672	101.77	101.43	102.9	-2.1192					89	27	4	0	0	0	0.26076	1	9392	9392		67.494	9.6824	1	1545600			54610	6005	45089	45127	59603	59603					0.08394308748324875
SPQQVDFRSVL	11	Unmodified	_SPQQVDFRSVL_					0	0	0		nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-11|MYLK;nc|ENSG00000065534|Q15746-7|MYLK;MYLK|p.E1444Sfs*9|1|0.06|ENSG00000065534|chr3:123649056-123649056|C/-|frameshift_variant;ENST00000504946.5_1_3:123400948-123419770:-|nuORF	nc|ENSG00000065534|Q15746-5|MYLK	nc|ENSG00000065534|Q15746-5|MYLK	MULTI-MSMS	OvCa9_classI_Rep3	3	638.3378295898438	2	638.338227	1274.6619	0.28707	0.00018325	-1.1654	-0.00074391	-0.87832	-0.00056066	638.3374714976715	103.81	1.7242	102.37	101.66	103.38	-1.4347					111	32	6	0	0	0	0.20674	2	7208	7208;7214		79.07	24.348	1	519000			54611	1330	45090	45128	59604;59605	59604					0.03555569592185748
SPQQVDFRSVL	11	Unmodified	_SPQQVDFRSVL_					0	0	0		nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-11|MYLK;nc|ENSG00000065534|Q15746-7|MYLK;MYLK|p.E1444Sfs*9|1|0.06|ENSG00000065534|chr3:123649056-123649056|C/-|frameshift_variant;ENST00000504946.5_1_3:123400948-123419770:-|nuORF	nc|ENSG00000065534|Q15746-5|MYLK	nc|ENSG00000065534|Q15746-5|MYLK	MULTI-MSMS	OvCa9_classI_Rep4_	4	638.3375854492188	2	638.338227	1274.6619	-0.12103	-7.7255E-05	-0.55372	-0.00035346	-0.67474	-0.00043071	638.3379058613988	104.42	1.7532	102.3	101.64	103.39	-2.1192					111	33	6	0	0	0	0.5614	2	9449	9449;9474		48.188	20.306	1	458220			54612	1330	45090	45128	59606;59607	59606					0.03555569592185748
SPQQVDFRSVL	11	Unmodified	_SPQQVDFRSVL_					0	0	0		nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;nc|ENSG00000065534|Q15746-11|MYLK;nc|ENSG00000065534|Q15746-7|MYLK;MYLK|p.E1444Sfs*9|1|0.06|ENSG00000065534|chr3:123649056-123649056|C/-|frameshift_variant;ENST00000504946.5_1_3:123400948-123419770:-|nuORF	nc|ENSG00000065534|Q15746-5|MYLK	nc|ENSG00000065534|Q15746-5|MYLK	MULTI-MATCH	OvCa9_classI_Rep2	2		2	638.338227	1274.6619	-1.7465	-0.0011149	0.92382	0.00058971	-0.82272	-0.00052517	638.3388888788968	103.09	1.3814	102.4	102.08	103.46	-0.68459	0.041977	0.0014991	NaN	79.07	86	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	400350			54613	1330	45090	45128							0.03555569592185748
SPQSPGDAL	9	Unmodified	_SPQSPGDAL_					0	0	0		ENSG00000056097|ENST00000265069|ZFR;ENST00000510369.5_1_5:32355868-32383900:-|nuORF	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.21270751953125	2	436.211432	870.408311	0.55523	0.0002422	-0.53202	-0.00023207	0.023204	1.0122E-05	436.2110950116892	68.675	1.7126	65.185	64.72	66.433	-3.4902					72	34	3	0	0	0	0.12365	3	5098	5098;5108;5121		90.777	19.481	1	690500			54614	1227	45091	45129	59608;59609;59610	59608					-0.03207657787288554
SPQSPGDAL	9	Unmodified	_SPQSPGDAL_					0	0	0		ENSG00000056097|ENST00000265069|ZFR;ENST00000510369.5_1_5:32355868-32383900:-|nuORF	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MATCH	OvCa9_classI_Rep2	2		2	436.211432	870.408311	-0.71333	-0.00031116	0.99281	0.00043307	0.27948	0.00012191	436.21179169474755	68.226	1.3344	65.606	65.081	66.416	-2.6203	0.1775	0.00064078	NaN	90.777	55	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81667			54615	1227	45091	45129							-0.03207657787288554
SPRAAEPVQL	10	Unmodified	_SPRAAEPVQL_					0	0	0		ENSG00000107159|ENST00000378357|CA9	ENSG00000107159|ENST00000378357|CA9	ENSG00000107159|ENST00000378357|CA9	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.2967529296875	2	534.29583	1066.57711	-1.8795	-0.0010042	1.1665	0.00062325	-0.71297	-0.00038094	534.2965246010859	71.506	1.6118	68.049	67.677	69.289	-3.4563					80	32	4	0	0	0	0.43508	1	5447	5447		63.426	4.6445	1	1880500			54616	2590	45092	45130	59611	59611					0.04648243846236255
SPRASPLR	8	Unmodified	_SPRASPLR_					0	0	0			REV__ENST00000539294.5_1_8:64081202-64081433:+|nuORF	REV__ENST00000539294.5_1_8:64081202-64081433:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	442.2585754394531	2	442.259051	882.503549	0.037965	1.679E-05	-0.16544	-7.3169E-05	-0.12748	-5.6379E-05	442.2588141194549	38.55	1.6359	35.623	35.255	36.891	-2.9264					67	32	3	0	0	0	0.73938	1	1529	1529		31.955	0	1	275170	+		54617	27334	45093	45131	59612	59612					0.057597401944121884
SPRDPVLTL	9	Unmodified	_SPRDPVLTL_					0	0	0		ANKLE2|p.R560Kfs*4|1|0.14|ENSG00000176915|chr12:132735427-132735428|-/T|frameshift_variant;nc|ENSG00000176915|Q86XL3-2|ANKLE2;DHX30-ANKLE2|1|fusion;ENSG00000176915|ENST00000357997|ANKLE2;ENST00000538591.5_1_12:133311987-133319805:-|nuORF;ENST00000439231.6_1_12:133310604-133318035:-|nuORF	ANKLE2|p.R560Kfs*4|1|0.14|ENSG00000176915|chr12:132735427-132735428|-/T|frameshift_variant	ANKLE2|p.R560Kfs*4|1|0.14|ENSG00000176915|chr12:132735427-132735428|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	499.28814697265625	2	499.287474	996.560395	-1.1559	-0.0005771	0.43608	0.00021773	-0.71978	-0.00035938	499.2876340721799	91.351	1.3453	89.327	88.879	90.225	-2.0241					77	26	4	0	0	0	0.2784	1	5734	5734		65.465	1.2581	1	1681400			54618	92	45094	45132	59613	59613					0.061977429602734446
SPRDSLAL	8	Unmodified	_SPRDSLAL_					0	0	0		nc|ENSG00000155846|Q86YN6-4|PPARGC1B;nc|ENSG00000155846|Q86YN6-2|PPARGC1B;nc|ENSG00000155846|Q86YN6-3|PPARGC1B;ENSG00000155846|ENST00000309241|PPARGC1B;nc|ENSG00000155846|Q86YN6-6|PPARGC1B;nc|ENSG00000155846|Q86YN6-5|PPARGC1B	nc|ENSG00000155846|Q86YN6-4|PPARGC1B	nc|ENSG00000155846|Q86YN6-4|PPARGC1B	MULTI-MSMS	OvCa9_classI_Rep2	2	429.73773193359375	2	429.737617	857.460681	-0.1352	-5.8101E-05	0.4073	0.00017503	0.27209	0.00011693	429.73765555310104	40.68	1.2309	37.97	37.7	38.931	-2.7097					50	24	3	0	0	0	0.29515	1	2082	2082		108.09	9.4581	1	378750			54619	5804	45095	45133	59614	59614					0.026249253463333844
SPREAARVL	9	Unmodified	_SPREAARVL_					0	0	0		nc|ENSG00000156521|Q2T9J0-2|TYSND1;ENSG00000156521|ENST00000287078|TYSND1	nc|ENSG00000156521|Q2T9J0-2|TYSND1	nc|ENSG00000156521|Q2T9J0-2|TYSND1	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.7906188964844	2	499.790715	997.566878	-1.1346	-0.00056708	1.0702	0.00053486	-0.06447	-3.2221E-05	499.7911515864605	48.635	2.0156	45.528	44.838	46.854	-3.1077					66	38	4	0	0	0	0.50149	1	2704	2704		42.396	6.7778	1	452430			54620	5847	45096	45134	59615	59615					0.06799680911649375
SPREKQQTN	9	Unmodified	_SPREKQQTN_					0	0	0		nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1;ENST00000475081.1_1_1:110527674-110555049:+|nuORF	nc|ENSG00000168710|O43865-2|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.7650756835938	2	544.278169	1086.54179	-0.79294	-0.00043158	4.4861	0.0024417	3.6932	0.0020101	544.2799685668199	51.955	1.6095	48.782	48.123	49.733	-3.1734					40	31	2	0	0	0	0.027462	1	3103	3103		14.865	0	1	43105			54621	6935	45097	45135	59616	59616					0.001975813184344588
SPRENILVSL	10	Unmodified	_SPRENILVSL_					0	0	0		ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	ENSG00000099194|ENST00000370355|SCD	MULTI-MSMS	OvCa9_classI_Rep3	3	564.32568359375	2	564.324588	1126.63462	-0.81585	-0.00046041	0.067324	3.7993E-05	-0.74853	-0.00042241	564.3246540994279	102.18	2.4595	100.66	100.27	102.73	-1.5211					131	46	5	0	0	0	0.11632	1	7006	7006		109.48	0	1	5848300			54622	1958	45098	45136	59617	59617					0.07637086051818187
SPRFPAQYL	9	Unmodified	_SPRFPAQYL_					0	0	0		ENSG00000204351|ENST00000375394|SKIC2;ENST00000485349.5_1_6:31936258-31936911:+|nuORF;ENST00000484835.1_1_6:31934891-31936687:+|nuORF	ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	MSMS	OvCa9_classI_Rep2	2	539.7872924804688	2	539.787641	1077.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.004	1	93.905	93.405	94.405	-1.0995								0	0	0	0.054374	1	8525	8525		77.318	25.982	1				54623	8972	45099	45137	59618	59618					0.02505162680131434
SPRFPAQYL	9	Unmodified	_SPRFPAQYL_					0	0	0		ENSG00000204351|ENST00000375394|SKIC2;ENST00000485349.5_1_6:31936258-31936911:+|nuORF;ENST00000484835.1_1_6:31934891-31936687:+|nuORF	ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	MSMS	OvCa9_classI_Rep2	2	539.78759765625	2	539.787641	1077.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.096	1	94.068	93.568	94.568	-1.0281								0	0	0	0.16939	1	8536	8536		52.937	5.0211	1				54624	8972	45099	45137	59619	59619					0.02505162680131434
SPRFPAQYL	9	Unmodified	_SPRFPAQYL_					0	0	0		ENSG00000204351|ENST00000375394|SKIC2;ENST00000485349.5_1_6:31936258-31936911:+|nuORF;ENST00000484835.1_1_6:31934891-31936687:+|nuORF	ENSG00000204351|ENST00000375394|SKIC2	ENSG00000204351|ENST00000375394|SKIC2	MULTI-MSMS	OvCa9_classI_Rep3	3	539.787841796875	2	539.787641	1077.56073	-0.068389	-3.6916E-05	-0.16108	-8.6951E-05	-0.22947	-0.00012387	539.7874460950948	95.969	2.1666	94.141	93.582	95.749	-1.8286					93	42	4	0	0	0	0.3076	3	6282	6282;6287;6293		62.107	6.9922	1	697310			54625	8972	45099	45137	59620;59621;59622	59620					0.02505162680131434
SPRGDAPPL	9	Unmodified	_SPRGDAPPL_					0	0	0			REV__ENST00000505061.5_1_15:42111671-42117631:+|nuORF	REV__ENST00000505061.5_1_15:42111671-42117631:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	455.2440490722656	2	455.243067	908.47158	0.16097	7.3281E-05	-0.7171	-0.00032645	-0.55613	-0.00025317	455.24269794920673	58.468	1.8427	55.076	54.651	56.494	-3.392					102	36	5	0	0	0	0.1804	1	3838	3838		79.713	0.26157	1	2396300	+		54626	19478	45100	45138	59623	59623					0.013683277206155253
SPRGMELFLVL	11	Unmodified	_SPRGMELFLVL_					0	0	0		ENST00000555923.1_1_14:81955203-81955461:-|nuORF	ENST00000555923.1_1_14:81955203-81955461:-|nuORF	ENST00000555923.1_1_14:81955203-81955461:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	421.2380065917969	3	421.237286	1260.69003	1.072	0.00045156	2.2358	0.00094181	3.3078	0.0013934	421.2381678760703	65.257	1.3105	62.533	62.128	63.439	-2.7245					80	25	4	0	0	0	0.59615	1	5009	5009		45.022	5.7694	1	467360			54627	13652	45101	45139	59624	59624					0.07011176247920048
SPRGPGLNL	9	Unmodified	_SPRGPGLNL_					0	0	0		ENSG00000143294|ENST00000271526|PRCC	ENSG00000143294|ENST00000271526|PRCC	ENSG00000143294|ENST00000271526|PRCC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	455.2440490722656	2	455.758884	909.503215	0.22573	0.00010288	-0.81966	-0.00037357	-0.59392	-0.00027069	455.758371895496	57.814	1.3098	54.469	54.138	55.447	-3.3449					42	25	2	0	0	0	0.027446	1	3838	3838		42.864	28.727	1	276420			54628	5028	45102	45140	59625	59625					0.04484320474546166
SPRGPGLNL	9	Unmodified	_SPRGPGLNL_					0	0	0		ENSG00000143294|ENST00000271526|PRCC	ENSG00000143294|ENST00000271526|PRCC	ENSG00000143294|ENST00000271526|PRCC	MULTI-MATCH	OvCa9_classI_Rep2	2		2	455.758884	909.503215	0.58499	0.00026661	-0.7844	-0.0003575	-0.19941	-9.0885E-05	455.75839100177734	57.23	1.1913	54.438	53.931	55.122	-2.792	-0.01586	1.1647E-05	NaN	42.864	36	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73425			54629	5028	45102	45140							0.04484320474546166
SPRHRPPEQP	10	Unmodified	_SPRHRPPEQP_					0	0	0		chr8:143795493-143803647|123|23.88|0.15|7.36|-|1|None,SCRIB|1	chr8:143795493-143803647|123|23.88|0.15|7.36|-|1|None,SCRIB|1	chr8:143795493-143803647|123|23.88|0.15|7.36|-|1|None,SCRIB|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.1987609863281	3	400.879261	1199.61595	1.3604	0.00054536	2.2865	0.0009166	3.6469	0.001462	401.21333348511376	56.723	0.12131	56.723	56.623	56.744	0					4	2	2	0	0	0	0.027028	1	4712	4712		17.833	0	1	37305			54630	539	45103	45141	59626	59626					0.02412969200599946
SPRIATTTA	9	Unmodified	_SPRIATTTA_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	OvCa9_classI_Rep2	2	459.2553405761719	2	459.256174	916.497795	-0.12634	-5.8024E-05	-0.37824	-0.00017371	-0.50458	-0.00023173	459.25582723409684	47.255	0.98959	44.545	44.242	45.231	-2.7097					48	19	3	0	0	0	0.48047	1	2874	2874		44.377	0.26039	1	216050			54631	4591	45104	45142	59627	59627					0.03620596892085359
SPRIATTTA	9	Unmodified	_SPRIATTTA_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	459.25762939453125	2	459.256174	916.497795	-0.14326	-6.5794E-05	-0.61921	-0.00028438	-0.76248	-0.00035017	459.25583040570086	47.417	1.3179	44.311	44.032	45.35	-3.1055					78	25	4	0	0	0	0.041116	2	2547	2547;2571		125.81	14.166	1	1474600			54632	4591	45104	45142	59628;59629	59628					0.03620596892085359
SPRIPPSVL	9	Unmodified	_SPRIPPSVL_					0	0	0			REV__ENSG00000170832|ENST00000300896|USP32	REV__ENSG00000170832|ENST00000300896|USP32	MULTI-MSMS	OvCa9_classI_Rep2	2	483.29168701171875	2	483.292559	964.570566	1.622	0.0007839	-1.7283	-0.0008353	-0.10634	-5.1394E-05	483.2916328469593	89.615	1.9416	88.313	87.84	89.781	-1.302					88	38	3	0	0	0	0.14998	2	7907	7907;7914		84.916	10.66	1	716900	+		54633	21564	45105	45143	59630;59631	59630					0.08686350685513844
SPRIRAPINL	10	Unmodified	_SPRIRAPINL_					0	0	0			REV__ENSG00000184939|ENST00000563169|ZFP90	REV__ENSG00000184939|ENST00000563169|ZFP90	MULTI-MSMS	OvCa9_classI_Rep2	2	568.8469848632812	2	568.848564	1135.68258	-0.94065	-0.00053509	-2.591	-0.0014739	-3.5317	-0.002009	568.8468987403617	122.03	1.7301	121.81	120.93	122.66	-0.21803					88	34	3	0	0	0	0.74374	1	11843	11843		25.574	0	1	269790	+		54634	22462	45106	45144	59632	59632					0.12016204762494453
SPRKGWPPRLL	11	Unmodified	_SPRKGWPPRLL_					0	0	0			REV__ENST00000501931.1_1_15:76030775-76030853:-|nuORF	REV__ENST00000501931.1_1_15:76030775-76030853:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.26263427734375	3	436.262935	1305.76697	0.30224	0.00013186	-3.8537	-0.0016812	-3.5515	-0.0015494	436.26132611896287	65.037	2.5312	61.551	61.163	63.694	-3.4854					175	51	6	0	0	0	0.68709	1	4657	4657		34.087	5.5098	1	6796800	+		54635	26821	45107	45145	59633	59633					0.12632155579262871
SPRKLPTSL	9	Unmodified	_SPRKLPTSL_					0	0	0		ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	MULTI-MSMS	OvCa9_classI_Rep2	2	499.8038635253906	2	499.803291	997.59203	-0.79283	-0.00039626	0.56419	0.00028199	-0.22863	-0.00011427	499.803503863494	58.325	1.5782	55.54	55.08	56.658	-2.7844					54	30	2	0	0	0	0.16264	1	4209	4209		82.75	3.0379	1	917370			54636	935	45108	45146	59634	59634					0.09313735714226823
SPRKLPTSL	9	Unmodified	_SPRKLPTSL_					0	0	0		ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.8054504394531	2	499.803291	997.59203	-0.33802	-0.00016895	-0.25211	-0.00012601	-0.59014	-0.00029495	499.80314322548156	59.02	1.8331	55.628	55.3	57.133	-3.392					85	36	4	0	0	0	0.1149	1	3907	3907		93.143	5.3889	1	2433000			54637	935	45108	45146	59635	59635					0.09313735714226823
SPRLMSNAL	9	Oxidation (M)	_SPRLM(Oxidation (M))SNAL_		SPRLM(1)SNAL		SPRLM(44)SNAL	0	0	1		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MSMS	OvCa9_classI_Rep3	3	502.762939453125	2	502.763309	1003.51206	1.2962	0.00065166	-1.3666	-0.00068706	-0.070404	-3.5396E-05	502.76247959947113	61.457	2.958	58.389	57.803	60.761	-3.0685					131	69	3	0	0	0	0.48047	1	2178	2178		44.377	6.5657	1	112640			54638	4580	45109	45147	59636	59636		146			0.01044926048734851
SPRLMSNAL	9	Unmodified	_SPRLMSNAL_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.7670593261719	2	494.765852	987.51715	0.032511	1.6086E-05	-0.47423	-0.00023463	-0.44172	-0.00021855	494.7654705234626	78.054	1.1953	75.238	74.777	75.973	-2.8165					55	24	4	0	0	0	0.22035	1	6275	6275		72.879	6.45	1	863990			54639	4580	45109	45148	59637	59637					0.022892299113550507
SPRLMSNAL	9	Unmodified	_SPRLMSNAL_					0	0	0		nc|ENSG00000137409|Q9NZJ7-2|MTCH1;ENSG00000137409|ENST00000373627|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	nc|ENSG00000137409|Q9NZJ7-2|MTCH1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	494.765852	987.51715	-0.25113	-0.00012425	-0.10841	-5.3637E-05	-0.35954	-0.00017789	494.7657370928058	76.971	2.1815	75.181	73.703	75.884	-1.7894	-0.028128	0.00013438	NaN	72.879	86	41	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	353950			54640	4580	45109	45148							0.022892299113550507
SPRLPVGGF	9	Unmodified	_SPRLPVGGF_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MSMS	OvCa9_classI_Rep2	2	465.2636413574219	2	465.263802	928.513051	-0.46818	-0.00021783	0.12185	5.6692E-05	-0.34633	-0.00016113	465.2638720845848	94.188	2.7455	93.089	92.644	95.389	-1.0995					139	54	4	0	0	0	0.041116	10	8421	8410;8415;8421;8428;8434;8440;8446;8452;8458;8465		125.81	57.027	1	3012500			54641	5697	45110	45149	59638;59639;59640;59641;59642;59643;59644;59645;59646;59647	59640					0.045935084799680226
SPRLPVGGF	9	Unmodified	_SPRLPVGGF_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MSMS	OvCa9_classI_Rep3	3	465.2646484375	2	465.263802	928.513051	-0.63117	-0.00029366	0.15992	7.4405E-05	-0.47125	-0.00021926	465.2638898005835	94.935	2.2009	93.039	92.612	94.812	-1.8956					133	43	5	0	0	0	0.026923	11	6166	6144;6148;6154;6160;6166;6173;6179;6185;6191;6197;6204		138.83	46.363	1	4134500			54642	5697	45110	45149	59648;59649;59650;59651;59652;59653;59654;59655;59656;59657;59658	59652					0.045935084799680226
SPRLPVGGF	9	Unmodified	_SPRLPVGGF_					0	0	0		nc|ENSG00000153827|Q14669-4|TRIP12;nc|ENSG00000153827|Q14669|TRIP12;nc|ENSG00000153827|Q14669-2|TRIP12;nc|ENSG00000153827|Q14669-3|TRIP12;ENSG00000153827|ENST00000675903|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	nc|ENSG00000153827|Q14669-4|TRIP12	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.2647399902344	2	465.263802	928.513051	-1.2779	-0.00059456	0.81793	0.00038056	-0.45996	-0.000214	465.2642045188311	95.555	2.7187	93.087	92.661	95.38	-2.4685					134	53	4	0	0	0	0.041116	6	8396	8387;8396;8408;8421;8433;8445		125.81	41.86	1	3886800			54643	5697	45110	45149	59659;59660;59661;59662;59663;59664	59660					0.045935084799680226
SPRLSQTFLQL	11	Unmodified	_SPRLSQTFLQL_					0	0	0		ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENST00000519868.1_1_5:169508643-169509859:+|nuORF;ENST00000520450.5_1_5:169484535-169509859:+|nuORF	ENSG00000134516|ENST00000520908|DOCK2	ENSG00000134516|ENST00000520908|DOCK2	MULTI-MSMS	OvCa9_classI_Rep2	2	645.3638305664062	2	645.364244	1288.71394	-1.1906	-0.00076838	1.3097	0.00084522	0.11907	7.684E-05	645.3648820929905	114.84	1.0363	114.72	114.4	115.44	-0.11777					48	20	3	0	0	0	0.69589	1	10938	10938		31.068	1.9186	1	121570			54644	4305	45111	45150	59665	59665					0.08112733005941664
SPRLSQTFLQL	11	Unmodified	_SPRLSQTFLQL_					0	0	0		ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENST00000519868.1_1_5:169508643-169509859:+|nuORF;ENST00000520450.5_1_5:169484535-169509859:+|nuORF	ENSG00000134516|ENST00000520908|DOCK2	ENSG00000134516|ENST00000520908|DOCK2	MULTI-MSMS	OvCa9_classI_Rep4_	4	645.865234375	2	645.364244	1288.71394	0.48507	0.00031304	-0.96638	-0.00062367	-0.48132	-0.00031062	645.3634288602703	116.16	1.0105	114.79	114.5	115.51	-1.3645					53	19	4	0	0	0	0.6112	1	10830	10830		43.651	5.8393	1	138330			54645	4305	45111	45150	59666	59666					0.08112733005941664
SPRMHQIILDP	11	Unmodified	_SPRMHQIILDP_					0	0	0		tr|A0A553SUN8|A0A553SUN8_NIACIColicinOS=NialliacirculansOX=1397GN=CEQ21_03580PE=3SV=1	tr|A0A553SUN8|A0A553SUN8_NIACIColicinOS=NialliacirculansOX=1397GN=CEQ21_03580PE=3SV=1	tr|A0A553SUN8|A0A553SUN8_NIACIColicinOS=NialliacirculansOX=1397GN=CEQ21_03580PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.26251220703125	3	436.236057	1305.68634	0.23547	0.00010272	-3.5389	-0.0015438	-3.3034	-0.0014411	436.23449176134085	65.217	0.1936	61.731	61.647	61.84	-3.4854					5	3	2	0	0	0	0.025378	1	4694	4694		23.378	0	1	13820			54646	34626	45112	45151	59667	59667					0.04572506474073634
SPRPNIILGL	10	Unmodified	_SPRPNIILGL_					0	0	0		ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3312377929688	2	540.332216	1078.64988	-0.23133	-0.000125	-0.069671	-3.7645E-05	-0.301	-0.00016264	540.3320015899856	111.49	0.84241	109.97	109.63	110.47	-1.5111					42	15	4	0	0	0	0.53807	1	10287	10287		49.536	5.005	1	279660			54647	2148	45113	45152	59668	59668					0.11369997639667417
SPRPNIILGL	10	Unmodified	_SPRPNIILGL_					0	0	0		ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	ENSG00000101191|ENST00000395343|DIDO1	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	540.332216	1078.64988	-0.54331	-0.00029357	0.17727	9.5786E-05	-0.36604	-0.00019778	540.332194443295	110.01	0.79148	109.83	109.51	110.3	-0.17236	-0.074612	0.00054094	NaN	49.536	41	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218440			54648	2148	45113	45152							0.11369997639667417
SPRPPLISV	9	Unmodified	_SPRPPLISV_					0	0	0		nc|ENSG00000053770|Q9H0R1-2|AP5M1;ENST00000554931.1_1_14:57736032-57741739:+|nuORF;ENSG00000053770|ENST00000261558|AP5M1	nc|ENSG00000053770|Q9H0R1-2|AP5M1	nc|ENSG00000053770|Q9H0R1-2|AP5M1	MULTI-MSMS	OvCa9_classI_Rep2	2	483.29241943359375	2	483.292559	964.570566	1.622	0.0007839	-1.7283	-0.0008353	-0.10634	-5.1394E-05	483.2916328469593	89.615	1.9416	88.313	87.84	89.781	-1.302					88	38	3	0	0	0	0.16562	5	7889	7879;7883;7889;7894;7900		82.241	14.011	1	716900			54649	1201	45114	45153	59669;59670;59671;59672;59673	59671					0.08686350685525213
SPRPPLISV	9	Unmodified	_SPRPPLISV_					0	0	0		nc|ENSG00000053770|Q9H0R1-2|AP5M1;ENST00000554931.1_1_14:57736032-57741739:+|nuORF;ENSG00000053770|ENST00000261558|AP5M1	nc|ENSG00000053770|Q9H0R1-2|AP5M1	nc|ENSG00000053770|Q9H0R1-2|AP5M1	MULTI-MSMS	OvCa9_classI_Rep3	3	483.2935791015625	2	483.292559	964.570566	-0.759	-0.00036682	0.45964	0.00022214	-0.29936	-0.00014468	483.2927106787504	90.319	2.1868	88.238	87.798	89.985	-2.0805					92	42	3	0	0	0	0.16562	5	5609	5599;5603;5609;5616;5622		82.241	10.945	1	1237800			54650	1201	45114	45153	59674;59675;59676;59677;59678	59676					0.08686350685525213
SPRPPLISV	9	Unmodified	_SPRPPLISV_					0	0	0		nc|ENSG00000053770|Q9H0R1-2|AP5M1;ENST00000554931.1_1_14:57736032-57741739:+|nuORF;ENSG00000053770|ENST00000261558|AP5M1	nc|ENSG00000053770|Q9H0R1-2|AP5M1	nc|ENSG00000053770|Q9H0R1-2|AP5M1	MULTI-MSMS	OvCa9_classI_Rep4_	4	483.29339599609375	2	483.292559	964.570566	-0.24662	-0.00011919	-0.1302	-6.2925E-05	-0.37682	-0.00018211	483.2924158875242	90.809	2.292	88.233	87.801	90.093	-2.575					88	44	3	0	0	0	0.22621	4	7821	7821;7842;7855;7867		71.877	17.991	1	998200			54651	1201	45114	45153	59679;59680;59681;59682	59679					0.08686350685525213
SPRPTATRPV	10	Unmodified	_SPRPTATRPV_					0	0	0		PCDHAC2|p.H770Pfs*34|1|0.02|ENSG00000243232|chr5:140969074-140969075|-/CCCTGCAGGAGAACAGT|frameshift_variant	PCDHAC2|p.H770Pfs*34|1|0.02|ENSG00000243232|chr5:140969074-140969075|-/CCCTGCAGGAGAACAGT|frameshift_variant	PCDHAC2|p.H770Pfs*34|1|0.02|ENSG00000243232|chr5:140969074-140969075|-/CCCTGCAGGAGAACAGT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.8309326171875	2	541.309272	1080.60399	-2.9642	-0.0016046	-3.8545	-0.0020865	-6.8187	-0.003691	541.3069440784867	126.03	0.4389	124.62	124.39	124.83	-1.4143					12	8	2	0	0	0	0.026606	1	11978	11978		44.377	8.7589	1	10246			54652	15478	45115	45154	59683	59683					0.06691352457414723
SPRPVKGK	8	Unmodified	_SPRPVKGK_					0	0	0		nc|ENSG00000157060|Q9BZQ2-4|SHCBP1L;ENSG00000157060|ENST00000367547|SHCBP1L	nc|ENSG00000157060|Q9BZQ2-4|SHCBP1L	nc|ENSG00000157060|Q9BZQ2-4|SHCBP1L	MULTI-MSMS	OvCa9_classI_Rep2	2	434.7702941894531	2	434.771794	867.529036	1.2559	0.00054602	-1.3563	-0.00058966	-0.10039	-4.3645E-05	434.7711959531507	41.911	2.4713	39.201	38.881	41.353	-2.7097					118	49	4	0	0	0	0.73938	1	2305	2305		31.955	0	1	2230100			54653	5871	45116	45155	59684	59684					0.08997214716850976
SPRQLFSAL	9	Unmodified	_SPRQLFSAL_					0	0	0		ENST00000564785.5_1_15:75652863-75653028:-|nuORF;ENST00000563441.5_1_15:75651254-75660924:-|nuORF;nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;nc|ENSG00000140400|Q9NTJ4-2|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1	ENST00000564785.5_1_15:75652863-75653028:-|nuORF	ENST00000564785.5_1_15:75652863-75653028:-|nuORF	MSMS	OvCa9_classI_Rep2	2	509.78643798828125	2	509.787641	1017.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.791	1	98.961	98.461	99.461	-0.83051								0	0	0	0.03228	1	9106	9106		87.696	26.724	1				54654	4838	45117	45156	59685	59685					0.052651626801548446
SPRQLFSAL	9	Unmodified	_SPRQLFSAL_					0	0	0		ENST00000564785.5_1_15:75652863-75653028:-|nuORF;ENST00000563441.5_1_15:75651254-75660924:-|nuORF;nc|ENSG00000140400|Q9NTJ4-3|MAN2C1;nc|ENSG00000140400|Q9NTJ4-2|MAN2C1;ENSG00000140400|ENST00000267978|MAN2C1;nc|ENSG00000140400|Q9NTJ4-4|MAN2C1	ENST00000564785.5_1_15:75652863-75653028:-|nuORF	ENST00000564785.5_1_15:75652863-75653028:-|nuORF	MSMS	OvCa9_classI_Rep2	2	509.7862243652344	2	509.787641	1017.56073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	99.891	1	99.06	98.56	99.56	-0.83051								0	0	0	0.042186	1	9118	9118		80.455	16.247	1				54655	4838	45117	45156	59686	59686					0.052651626801548446
SPRQQQFLD	9	Unmodified	_SPRQQQFLD_					0	0	0		TCF20|p.Q1269Sfs*17|1|0.07|ENSG00000100207|chr22:42211501-42211502|-/ATGATGTTGATGATCTGCCCCAGGA|frameshift_variant;nc|ENSG00000100207|Q9UGU0-2|TCF20;ENSG00000100207|ENST00000677622|TCF20	TCF20|p.Q1269Sfs*17|1|0.07|ENSG00000100207|chr22:42211501-42211502|-/ATGATGTTGATGATCTGCCCCAGGA|frameshift_variant	TCF20|p.Q1269Sfs*17|1|0.07|ENSG00000100207|chr22:42211501-42211502|-/ATGATGTTGATGATCTGCCCCAGGA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.8052978515625	2	559.783087	1117.55162	0.052924	2.9626E-05	-1.4692	-0.00082242	-1.4162	-0.00079279	560.2834040701719	67.861	0.35361	67.861	67.642	67.996	0					12	8	2	0	0	0	0.027462	1	6376	6376		19.997	0	1	368310			54656	2025	45118	45157	59687	59687					-0.0024523067620521033
SPRRAAPL	8	Unmodified	_SPRRAAPL_					0	0	0		ENST00000526623.2_1_11:64948704-64948845:-|nuORF	ENST00000526623.2_1_11:64948704-64948845:-|nuORF	ENST00000526623.2_1_11:64948704-64948845:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	434.26220703125	2	434.261594	866.508634	0.49852	0.00021649	-0.27645	-0.00012005	0.22207	9.6437E-05	434.26135764998844	46.915	0.61748	46.915	46.676	47.294	0					31	13	3	0	0	0	0.73626	1	3343	3343		33.516	1.5607	1	1188900			54657	13222	45119	45158	59688	59688					0.0700404405702102
SPRRPWHHKT	10	Unmodified	_SPRRPWHHKT_					0	0	0		ENST00000488181.1_2_10:128193626-128335169:-|nuORF	ENST00000488181.1_2_10:128193626-128335169:-|nuORF	ENST00000488181.1_2_10:128193626-128335169:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.78125	3	434.57065	1300.69012	0.58862	0.0002558	0.78017	0.00033904	1.3688	0.00059483	434.5711111518732	57.61	0.8643	54.265	53.985	54.849	-3.3449					27	16	2	0	0	0	0.026942	1	3743	3743		10.104	0	1	70738			54658	12663	45120	45159	59689	59689					0.051803570827587464
SPRRPWHHKT	10	Unmodified	_SPRRPWHHKT_					0	0	0		ENST00000488181.1_2_10:128193626-128335169:-|nuORF	ENST00000488181.1_2_10:128193626-128335169:-|nuORF	ENST00000488181.1_2_10:128193626-128335169:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.78125	3	434.57065	1300.69012	0.71659	0.00031141	1.7937	0.00077951	2.5103	0.0010909	434.57092837117966	57.118	1.5776	53.773	53.07	54.647	-3.3449					18	11	2	0	0	0	0.026942	1	3743	3743		10.104	0	1	49813			54659	12663	45120	45159	59690	59690					0.051803570827587464
SPRTSGVL	8	Unmodified	_SPRTSGVL_					0	0	0		ENST00000468058.1_1_19:7975099-7977313:+|nuORF;ENSG00000076984|ENST00000397979|MAP2K7;nc|ENSG00000076984|O14733-4|MAP2K7;nc|ENSG00000076984|O14733-3|MAP2K7;nc|ENSG00000076984|O14733-2|MAP2K7	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	ENST00000468058.1_1_19:7975099-7977313:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	408.7323303222656	2	408.732335	815.450116	0.14678	5.9995E-05	-0.17873	-7.3052E-05	-0.031945	-1.3057E-05	408.7321323707192	50.92	1.2115	47.746	47.464	48.676	-3.1734					65	23	4	0	0	0	0.6345	1	2957	2957		56.721	1.2168	1	717180			54660	1562	45121	45160	59691	59691					0.03500942691914588
SPRVHSLIL	9	Unmodified	_SPRVHSLIL_					0	0	0		ENSG00000090487|ENST00000204566|SPG21;nc|ENSG00000090487|Q9NZD8-2|SPG21	ENSG00000090487|ENST00000204566|SPG21	ENSG00000090487|ENST00000204566|SPG21	MULTI-MSMS	OvCa9_classI_Rep3	3	511.3105773925781	2	511.311284	1020.60801	-0.30592	-0.00015642	-0.30288	-0.00015486	-0.6088	-0.00031129	511.3111316521226	74.24	1.5187	71.767	71.387	72.906	-2.4733					104	30	4	0	0	0	0.28934	1	3675	3675		64.207	10.856	1	678530			54661	1840	45122	45161	59692	59692					0.09853441951145214
SPRVQFQSL	9	Unmodified	_SPRVQFQSL_					0	0	0		ENST00000489320.1_1_7:99158179-99158416:+|nuORF;ENST00000467680.5_1_7:99158164-99159602:+|nuORF;nc|ENSG00000197343|Q8N720-4|ZNF655;nc|ENSG00000197343|Q8N720-2|ZNF655;ENSG00000197343|ENST00000252713|ZNF655;nc|ENSG00000197343|Q8N720-3|ZNF655	ENST00000489320.1_1_7:99158179-99158416:+|nuORF	ENST00000489320.1_1_7:99158179-99158416:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	531.290771484375	2	531.290548	1060.56654	-0.74701	-0.00039688	0.53014	0.00028166	-0.21688	-0.00011522	531.2908040540239	82.405	1.2442	80.109	79.836	81.081	-2.2963					60	24	4	0	0	0	0.093198	2	4634	4634;4647		99.013	8.6431	1	923840			54662	8703	45123	45162	59693;59694	59693					0.03868261191814781
SPRWLSPF	8	Unmodified	_SPRWLSPF_					0	0	0		ENST00000301391.7_1_17:4047024-4047285:+|nuORF	ENST00000301391.7_1_17:4047024-4047285:+|nuORF	ENST00000301391.7_1_17:4047024-4047285:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.7237854003906	2	495.263802	988.513051	-0.29216	-0.0001447	-1.1609	-0.00057495	-1.4531	-0.00071965	495.26317618667787	76.722	0.85103	73.783	73.27	74.121	-2.9389					34	17	3	0	0	0	0.028476	1	6100	6100		35.201	0	1	53273			54663	10186	45124	45163	59695	59695					0.01833508479955981
SPRWLSPF	8	Unmodified	_SPRWLSPF_					0	0	0		ENST00000301391.7_1_17:4047024-4047285:+|nuORF	ENST00000301391.7_1_17:4047024-4047285:+|nuORF	ENST00000301391.7_1_17:4047024-4047285:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	495.263802	988.513051	0.30666	0.00015188	5.3054	0.0026276	5.6121	0.0027794	495.2664031637428	74.091	0.41678	74.091	73.907	74.324	0	0.15202	0.0012294	NaN	35.201	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	606200			54664	10186	45124	45163							0.01833508479955981
SPRWLSPF	8	Unmodified	_SPRWLSPF_					0	0	0		ENST00000301391.7_1_17:4047024-4047285:+|nuORF	ENST00000301391.7_1_17:4047024-4047285:+|nuORF	ENST00000301391.7_1_17:4047024-4047285:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	495.263802	988.513051	-0.90054	-0.000446	6.6168	0.003277	5.7162	0.002831	495.2670950246882	76.315	0.72779	73.944	73.62	74.348	-2.3715	0.004297	0.0025283	NaN	35.201	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40883			54665	10186	45124	45163							0.01833508479955981
SPRYIFTML	9	Oxidation (M)	_SPRYIFTM(Oxidation (M))L_		SPRYIFTM(1)L		SPRYIFTM(99)L	0	0	1		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-MSMS	OvCa9_classI_Rep2	2	572.2958984375	2	572.296985	1142.57942	-1.1579	-0.00066264	0.7951	0.00045503	-0.36276	-0.00020761	572.2972745206802	105.6	1.9911	105.17	104.85	106.84	-0.43642					97	39	4	0	0	0	0.094616	1	9816	9816		98.629	24.374	1	488990			54666	1564;4088	45125	45164	59696	59696		58			0.013829562596811229
SPRYIFTML	9	Oxidation (M)	_SPRYIFTM(Oxidation (M))L_					0	0	1		ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000131747|P11388-2|TOP2A;nc|ENSG00000131747|P11388-3|TOP2A;nc|ENSG00000131747|P11388-4|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	ENSG00000131747|ENST00000423485|TOP2A;nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-MATCH	OvCa9_classI_Rep3	3		2	572.296985	1142.57942	-0.014611	-8.3616E-06	-0.30952	-0.00017714	-0.32413	-0.0001855	572.2966211926881	106.71	1.7205	105.44	105.01	106.73	-1.267	0.12006	-0.0012044	NaN	98.629	82	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	544050			54667	1564;4088	45125	45164				58			0.013829562596811229
SPSAAHFITRL	11	Unmodified	_SPSAAHFITRL_					0	0	0		ENST00000530122.1_1_20:57266543-57280604:+|nuORF;ENST00000529976.5_1_20:57268807-57287813:+|nuORF;ENST00000527587.5_1_20:57268807-57288710:+|nuORF;nc|ENSG00000215440|Q8NDH3-3|NPEPL1;nc|ENSG00000215440|Q8NDH3-2|NPEPL1;nc|ENSG00000215440|Q8NDH3-5|NPEPL1;nc|ENSG00000215440|Q8NDH3-4|NPEPL1;ENSG00000215440|ENST00000356091|NPEPL1	ENST00000530122.1_1_20:57266543-57280604:+|nuORF	ENST00000530122.1_1_20:57266543-57280604:+|nuORF	MSMS	OvCa9_classI_Rep2	2	600.3308715820312	2	600.330205	1198.64586	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.181	1	79.532	79.032	80.032	-1.6485								0	0	0	0.017413	1	6883	6883		89.029	27.338	1				54668	9207	45126	45165	59697	59697					0.054479081459248846
SPSAAHFITRL	11	Unmodified	_SPSAAHFITRL_					0	0	0		ENST00000530122.1_1_20:57266543-57280604:+|nuORF;ENST00000529976.5_1_20:57268807-57287813:+|nuORF;ENST00000527587.5_1_20:57268807-57288710:+|nuORF;nc|ENSG00000215440|Q8NDH3-3|NPEPL1;nc|ENSG00000215440|Q8NDH3-2|NPEPL1;nc|ENSG00000215440|Q8NDH3-5|NPEPL1;nc|ENSG00000215440|Q8NDH3-4|NPEPL1;ENSG00000215440|ENST00000356091|NPEPL1	ENST00000530122.1_1_20:57266543-57280604:+|nuORF	ENST00000530122.1_1_20:57266543-57280604:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	600.3309326171875	2	600.330205	1198.64586	1.0905	0.00065464	-1.7312	-0.0010393	-0.64075	-0.00038466	600.3293203379319	82.11	1.9693	79.814	79.385	81.354	-2.2963					92	39	5	0	0	0	0.57194	1	4622	4622		47.228	14.477	1	867220			54669	9207	45126	45165	59698	59698					0.054479081459248846
SPSAAHFITRL	11	Unmodified	_SPSAAHFITRL_					0	0	0		ENST00000530122.1_1_20:57266543-57280604:+|nuORF;ENST00000529976.5_1_20:57268807-57287813:+|nuORF;ENST00000527587.5_1_20:57268807-57288710:+|nuORF;nc|ENSG00000215440|Q8NDH3-3|NPEPL1;nc|ENSG00000215440|Q8NDH3-2|NPEPL1;nc|ENSG00000215440|Q8NDH3-5|NPEPL1;nc|ENSG00000215440|Q8NDH3-4|NPEPL1;ENSG00000215440|ENST00000356091|NPEPL1	ENST00000530122.1_1_20:57266543-57280604:+|nuORF	ENST00000530122.1_1_20:57266543-57280604:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	600.33154296875	2	600.330205	1198.64586	-0.084505	-5.0731E-05	-0.4045	-0.00024284	-0.48901	-0.00029357	600.3300774502577	82.282	1.4067	79.599	79.156	80.563	-2.6829					76	28	4	0	0	0	0.25869	2	6800	6790;6800		72.096	19.007	1	686120			54670	9207	45126	45165	59699;59700	59700					0.054479081459248846
SPSALRVL	8	Unmodified	_SPSALRVL_					0	0	0		ENST00000498640.1_1_3:158422689-158450240:-|nuORF;nc|ENSG00000118849|P49788-2|RARRES1;ENSG00000118849|ENST00000237696|RARRES1	ENST00000498640.1_1_3:158422689-158450240:-|nuORF	ENST00000498640.1_1_3:158422689-158450240:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	421.75909423828125	2	421.758352	841.502152	0.40209	0.00016959	-0.62006	-0.00026152	-0.21797	-9.1931E-05	421.7579719232006	80.938	1.7268	78.615	78.286	80.012	-2.3226					77	33	4	0	0	0	0.17036	4	4473	4461;4467;4473;4479		129.68	35.676	1	529060			54671	3326	45127	45166	59701;59702;59703;59704	59703					0.07506106105654453
SPSALRVL	8	Unmodified	_SPSALRVL_					0	0	0		ENST00000498640.1_1_3:158422689-158450240:-|nuORF;nc|ENSG00000118849|P49788-2|RARRES1;ENSG00000118849|ENST00000237696|RARRES1	ENST00000498640.1_1_3:158422689-158450240:-|nuORF	ENST00000498640.1_1_3:158422689-158450240:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	421.7592468261719	2	421.758352	841.502152	-1.0993	-0.00046366	0.96659	0.00040767	-0.13275	-5.5989E-05	421.7586648497932	81.573	1.5051	78.862	78.592	80.097	-2.7106					67	30	4	0	0	0	0.24597	2	6718	6707;6718		116.9	31.544	1	554390			54672	3326	45127	45166	59705;59706	59706					0.07506106105654453
SPSCVSLLVL	10	Unmodified	_SPSCVSLLVL_					0	0	0			REV__ENST00000286953.7_1_14:104378785-104378857:-|nuORF	REV__ENST00000286953.7_1_14:104378785-104378857:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.7413635253906	2	509.286085	1016.55762	-0.02592	-1.3201E-05	1.7485	0.00089047	1.7225	0.00087727	509.28726700158813	58.547	0.33261	58.547	58.322	58.655	0					14	7	4	0	0	0	0.026802	1	4960	4960		34.173	0	1	263790	+		54673	24140	45128	45167	59707	59707					0.050001515111148365
SPSDEKARMKL	11	Unmodified	_SPSDEKARMKL_					0	0	0		ENSG00000124212|ENST00000244043|PTGIS	ENSG00000124212|ENST00000244043|PTGIS	ENSG00000124212|ENST00000244043|PTGIS	MULTI-MSMS	OvCa9_classI_Rep4_	4	421.2249755859375	3	421.223817	1260.64962	-0.91828	-0.0003868	0.78554	0.00033089	-0.13275	-5.5917E-05	421.22419359642186	46.394	1.0856	43.321	43.083	44.169	-3.0724					62	20	4	0	0	0	0.24327	1	2434	2434		74.165	20.568	1	374910			54674	3634	45129	45168	59708	59708					0.029722098574893607
SPSDEKARMKL	11	Unmodified	_SPSDEKARMKL_					0	0	0		ENSG00000124212|ENST00000244043|PTGIS	ENSG00000124212|ENST00000244043|PTGIS	ENSG00000124212|ENST00000244043|PTGIS	MULTI-MATCH	OvCa9_classI_Rep2	2		3	421.223817	1260.64962	-0.049375	-2.0798E-05	0.19447	8.1915E-05	0.14509	6.1117E-05	421.22383693199123	45.926	0.99629	43.216	42.947	43.943	-2.7097	-0.052496	-0.00039877	NaN	74.165	41	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103940			54675	3634	45129	45168							0.029722098574893607
SPSDRPLSL	9	Unmodified	_SPSDRPLSL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;nc|ENSG00000030066|Q12769-3|NUP160;NUP160|p.A767Dfs*11|1|0.06|ENSG00000030066|chr11:47808471-47808472|-/T|frameshift_variant	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.2623596191406	2	486.261456	970.50836	0.14933	7.2616E-05	-1.0176	-0.00049484	-0.86831	-0.00042223	486.2609073948677	75.719	1.0071	72.78	72.497	73.504	-2.9389					52	20	4	0	0	0	0.033166	3	5985	5971;5985;6003		132.76	34.128	1	748730			54676	1064	45130	45169	59709;59710;59711	59710					0.021925795465335796
SPSDRPLSL	9	Unmodified	_SPSDRPLSL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;nc|ENSG00000030066|Q12769-3|NUP160;NUP160|p.A767Dfs*11|1|0.06|ENSG00000030066|chr11:47808471-47808472|-/T|frameshift_variant	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MATCH	OvCa9_classI_Rep2	2		2	486.261456	970.50836	-0.41341	-0.00020103	0.10403	5.0586E-05	-0.30938	-0.00015044	486.2613785690376	74.821	1.4056	72.85	72.167	73.572	-1.9711	0.035118	0.0004449	NaN	132.76	56	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185020			54677	1064	45130	45169							0.021925795465335796
SPSIKRKREV	10	Unmodified	_SPSIKRKREV_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.2305908203125	3	400.578811	1198.7146	1.3024	0.00052171	-1.2816	-0.00051336	0.020829	8.3437E-06	400.57823708170025	30.358	1.1884	30.358	29.935	31.124	0					55	23	4	0	0	0	0.02678	1	1252	1252		51.528	0	1	573870			54678	1094	45131	45170	59712	59712					0.12319572445630911
SPSKAFASL	9	Unmodified	_SPSKAFASL_					0	0	0		MUC16-RNASEH2B|1|fusion;MUC16-RNASEH2B|2|fusion;ENSG00000181143|ENST00000397910|MUC16;MUC16|p.P9131Lfs*70|1|0.1|ENSG00000181143|chr19:8949378-8949379|-/CATCCTTCCACAA|frameshift_variant;MUC16|p.F9515*|1|0.24|ENSG00000181143|chr19:8948225-8948226|AA/-|frameshift_variant;MUC16|p.T9803Vfs*24|1|0.05|ENSG00000181143|chr19:8947363-8947364|-/GGAC|frameshift_variant;MUC16|p.D9802Vfs*25|1|0.05|ENSG00000181143|chr19:8947365-8947366|-/ATCAACAACACCCAACTGGGTAGAAA|frameshift_variant;MUC16|p.E8637Kfs*10|1|0.09|ENSG00000181143|chr19:8950858-8950861|TCTC/-|frameshift_variant	MUC16-RNASEH2B|1|fusion;ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	OvCa9_classI_Rep4_	4	454.24871826171875	2	454.247818	906.481082	-0.097788	-4.442E-05	-0.23285	-0.00010577	-0.33064	-0.00015019	454.24758811595507	73.931	2.3542	70.7	70.434	72.788	-3.2308					89	48	3	0	0	0	0.0079542	1	5750	5750		199.7	73.89	1	1388900			54679	7920;14844	45132	45171	59713	59713					0.024100960061332444
SPSKAFASL	9	Unmodified	_SPSKAFASL_					0	0	0		MUC16-RNASEH2B|1|fusion;MUC16-RNASEH2B|2|fusion;ENSG00000181143|ENST00000397910|MUC16;MUC16|p.P9131Lfs*70|1|0.1|ENSG00000181143|chr19:8949378-8949379|-/CATCCTTCCACAA|frameshift_variant;MUC16|p.F9515*|1|0.24|ENSG00000181143|chr19:8948225-8948226|AA/-|frameshift_variant;MUC16|p.T9803Vfs*24|1|0.05|ENSG00000181143|chr19:8947363-8947364|-/GGAC|frameshift_variant;MUC16|p.D9802Vfs*25|1|0.05|ENSG00000181143|chr19:8947365-8947366|-/ATCAACAACACCCAACTGGGTAGAAA|frameshift_variant;MUC16|p.E8637Kfs*10|1|0.09|ENSG00000181143|chr19:8950858-8950861|TCTC/-|frameshift_variant	MUC16-RNASEH2B|1|fusion;ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-MATCH	OvCa9_classI_Rep2	2		2	454.247818	906.481082	1.6061	0.00072959	-1.6044	-0.00072877	0.0017919	8.1396E-07	454.2469135124345	72.856	1.831	70.456	69.75	71.581	-2.3999	-0.1219	-0.00038088	NaN	199.7	96	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	438900			54680	7920;14844	45132	45171							0.024100960061332444
SPSKPAKSL	9	Unmodified	_SPSKPAKSL_					0	0	0		ENSG00000146574|ENST00000316731|CCZ1B;ENSG00000122674|ENST00000325974|CCZ1;ENST00000478672.1_1_7:5938430-5940236:+|nuORF;ENST00000464543.1_1_7:6864046-6865828:-|nuORF;ENST00000496187.5_1_7:6863683-6865828:-|nuORF;CCZ1B|p.H85N|1|0.21|ENSG00000146574|chr7:6824514-6824514|G/T|missense_variant;ENST00000486840.1_1_7:6864046-6864211:-|nuORF	ENSG00000146574|ENST00000316731|CCZ1B	ENSG00000146574|ENST00000316731|CCZ1B	MULTI-MSMS	OvCa9_classI_Rep2	2	457.7688293457031	2	457.768917	913.523281	-0.48475	-0.0002219	0.62776	0.00028737	0.14301	6.5464E-05	457.7690527075125	33.854	1.0884	31.144	30.722	31.811	-2.7097					48	21	3	0	0	0	0.13326	3	1247	1243;1247;1260		88.177	10.573	1	153510			54681	3546	45133	45172	59714;59715;59716	59715					0.06306071414530834
SPSKPSLVSVP	11	Unmodified	_SPSKPSLVSVP_					0	0	0			REV__ENST00000517813.1_1_8:142202910-142203504:+|nuORF	REV__ENST00000517813.1_1_8:142202910-142203504:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.3118286132812	2	549.313689	1096.61282	-0.62599	-0.00034386	-1.6422	-0.00090209	-2.2682	-0.001246	549.3126667691848	39.993	0.97517	37.039	36.814	37.789	-2.9541					42	18	5	0	0	0	0.61983	1	1684	1684		42.864	1.4377	1	282310	+		54682	27018	45134	45173	59717	59717					0.0683828130324855
SPSKPSLVSVP	11	Unmodified	_SPSKPSLVSVP_					0	0	0			REV__ENST00000517813.1_1_8:142202910-142203504:+|nuORF	REV__ENST00000517813.1_1_8:142202910-142203504:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	549.313689	1096.61282	-0.27264	-0.00014977	1.0366	0.0005694	0.76391	0.00041963	549.3147270923661	39.585	1.0419	36.875	36.41	37.452	-2.7097	-0.081925	0.0027976	NaN	42.864	39	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79909	+		54683	27018	45134	45173							0.0683828130324855
SPSLLGRI	8	Unmodified	_SPSLLGRI_					0	0	0			REV__ENST00000496594.5_1_9:130885151-130886781:-|nuORF	REV__ENST00000496594.5_1_9:130885151-130886781:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	421.75909423828125	2	421.758352	841.502152	-1.0993	-0.00046366	0.96659	0.00040767	-0.13275	-5.5989E-05	421.7586648497932	81.573	1.5051	78.862	78.592	80.097	-2.7106					67	30	4	0	0	0	0.29515	1	6731	6731		108.09	5.3142	1	554390	+		54684	26763	45135	45174	59718	59718					0.0750610610567719
SPSLTASF	8	Unmodified	_SPSLTASF_					0	0	0			REV__tr|A0A7D6VT89|A0A7D6VT89_9CLOTATP-dependentDNAhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01885PE=3SV=1	REV__tr|A0A7D6VT89|A0A7D6VT89_9CLOTATP-dependentDNAhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01885PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	406.2019958496094	2	405.205618	808.396684	-0.20491	-8.3032E-05	2.0711	0.00083924	1.8662	0.0007562	405.20635336368196	49.15	0.36765	46.008	45.832	46.2	-3.1416					9	6	2	0	0	0	0.028476	1	2769	2769		42.474	0	1	9811.8	+		54685	31581	45136	45175	59719	59719					-0.015178548106177914
SPSLVSLPTE	10	Unmodified	_SPSLVSLPTE_					0	0	0		nc|ENSG00000173706|Q9ULI3-2|HEG1;ENSG00000173706|ENST00000311127|HEG1	nc|ENSG00000173706|Q9ULI3-2|HEG1	nc|ENSG00000173706|Q9ULI3-2|HEG1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7992553710938	2	515.276772	1028.53899	-0.19686	-0.00010144	0.05264	2.7124E-05	-0.14422	-7.4312E-05	515.276578401525	46.786	0.48869	46.786	46.587	47.076	0					24	10	3	0	0	0	0.026849	1	3305	3305		13.454	0	1	318600			54686	7407	45137	45176	59720	59720					0.025863131408868867
SPSNKAKGQG	10	Unmodified	_SPSNKAKGQG_					0	0	0			REV__ENSG00000124920|ENST00000278836|MYRF	REV__ENSG00000124920|ENST00000278836|MYRF	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.28131103515625	2	487.256705	972.498858	0.0078041	3.8026E-06	4.0404	0.0019687	4.0482	0.0019725	487.2583513551679	93.763	0.83206	92.664	92.382	93.214	-1.0995					33	15	3	0	0	0	0.026606	1	8422	8422		44.377	0	1	78690	+		54687	18710	45138	45177	59721	59721					0.011508112610044918
SPSPSPHGLP	10	Unmodified	_SPSPSPHGLP_					0	0	0		chr1:206064568-206097733|275|24.52|0.05|8.91|+|2|TE_info:SVA_D,SVA_D_dup120,SVA,Retroposon,donor,+,206063365,206064568|None,RHEX|1;chr1:206064480-206097733|351|28.76|0.16|7.51|+|0|TE_info:SVA_D,SVA_D_dup120,SVA,Retroposon,donor,+,206063365,206064480|None,RHEX|1;chr1:206064304-206097733|405|85.08|0.63|7.07|+|2|TE_info:SVA_D,SVA_D_dup120,SVA,Retroposon,donor,+,206063365,206064304|None,RHEX|1;chr1:206064214-206097733|345|16.42|0.11|7.2|+|2|TE_info:SVA_D,SVA_D_dup120,SVA,Retroposon,donor,+,206063365,206064214|None,RHEX|1;chr1:206064097-206097733|363|28.58|0.19|7.2|+|2|TE_info:SVA_D,SVA_D_dup120,SVA,Retroposon,donor,+,206063365,206064097|None,RHEX|1	chr1:206064568-206097733|275|24.52|0.05|8.91|+|2|TE_info:SVA_D,SVA_D_dup120,SVA,Retroposon,donor,+,206063365,206064568|None,RHEX|1	chr1:206064568-206097733|275|24.52|0.05|8.91|+|2|TE_info:SVA_D,SVA_D_dup120,SVA,Retroposon,donor,+,206063365,206064568|None,RHEX|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.23577880859375	2	488.248349	974.482145	1.2318	0.00060144	2.896	0.0014139	4.1278	0.0020154	488.25133752090346	83.14	0.25655	83.14	82.992	83.249	0					6	5	2	0	0	0	0.026871	1	8632	8632		37.159	0	1	37658			54688	252	45139	45178	59722	59722					-0.006116896249409365
SPSPVALITQ	10	Unmodified	_SPSPVALITQ_					0	0	0			REV__ENST00000256682.8_1_12:49331336-49331519:-|nuORF	REV__ENST00000256682.8_1_12:49331336-49331519:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.2748107910156	2	506.787307	1011.56006	-1.2683	-0.00064274	4.1587	0.0021076	2.8904	0.0014648	506.78937349179677	54.323	0.8194	51.075	50.876	51.695	-3.2474					24	15	2	0	0	0	0.026849	1	3367	3367		40.778	18.818	1	61799	+		54689	23893	45140	45179	59723	59723					0.05474323240423473
SPSPVLRLVL	10	Unmodified	_SPSPVLRLVL_					0	0	0		nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-2|EIF4G3;EIF4G3|p.V1177Cfs*16|1|0.06|ENSG00000075151|chr1:20851333-20851334|-/A|frameshift_variant	nc|ENSG00000075151|O43432|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.8397827148438	2	540.842416	1079.67028	-0.88204	-0.00047705	0.53456	0.00028911	-0.34749	-0.00018794	540.8426558467555	121.69	1.0708	120.35	120.06	121.13	-1.3479					41	20	3	0	0	0	0.6349	1	11470	11470		37.812	0.65241	1	57034			54690	1524	45141	45180	59724	59724					0.13363168299474637
SPSPVLRLVL	10	Unmodified	_SPSPVLRLVL_					0	0	0		nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-2|EIF4G3;EIF4G3|p.V1177Cfs*16|1|0.06|ENSG00000075151|chr1:20851333-20851334|-/A|frameshift_variant	nc|ENSG00000075151|O43432|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	540.842416	1079.67028	-1.8157	-0.00098201	1.5239	0.00082417	-0.29183	-0.00015784	540.8430582002868	120.38	0.78936	120.21	119.94	120.73	-0.17138	-0.058338	0.0013465	NaN	37.812	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54239			54691	1524	45141	45180							0.13363168299474637
SPSPVLRLVL	10	Unmodified	_SPSPVLRLVL_					0	0	0		nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-2|EIF4G3;EIF4G3|p.V1177Cfs*16|1|0.06|ENSG00000075151|chr1:20851333-20851334|-/A|frameshift_variant	nc|ENSG00000075151|O43432|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	540.842416	1079.67028	1.8261	0.00098765	-2.0885	-0.0011295	-0.26234	-0.00014189	540.8411133378982	121.28	1.0469	120.25	120.01	121.06	-1.0271	-0.016746	-0.0025609	NaN	37.812	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84572			54692	1524	45141	45180							0.13363168299474637
SPSRDRFVQL	10	Unmodified	_SPSRDRFVQL_					0	0	0		sp|Q6SW79|UL52_HCMVMPackagingproteinUL32homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL52PE=3SV=1;sp|P16793|UL52_HCMVAPackagingproteinUL32homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL52PE=3SV=1	sp|Q6SW79|UL52_HCMVMPackagingproteinUL32homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL52PE=3SV=1	sp|Q6SW79|UL52_HCMVMPackagingproteinUL32homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL52PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	402.22027587890625	3	402.219283	1203.63602	1.2154	0.00048884	-1.1066	-0.00044508	0.10879	4.3759E-05	402.2187403099645	69.657	1.4135	66.176	65.861	67.275	-3.4812					83	28	4	0	0	0	0.49595	1	5223	5223		54.722	5.1863	1	720470			54693	32901	45142	45181	59725	59725					0.04234720140561876
SPSRDRFVQL	10	Unmodified	_SPSRDRFVQL_					0	0	0		sp|Q6SW79|UL52_HCMVMPackagingproteinUL32homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL52PE=3SV=1;sp|P16793|UL52_HCMVAPackagingproteinUL32homologOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL52PE=3SV=1	sp|Q6SW79|UL52_HCMVMPackagingproteinUL32homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL52PE=3SV=1	sp|Q6SW79|UL52_HCMVMPackagingproteinUL32homologOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL52PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	602.8268432617188	2	602.825286	1203.63602	-0.13303	-8.0192E-05	0.028902	1.7423E-05	-0.10413	-6.2769E-05	602.825217982534	69.659	1.3641	66.177	65.91	67.275	-3.4812					65	27	3	0	0	0	0.52162	1	5225	5225		31.53	0	1	671060			54694	32901	45142	45181	59726	59726					0.04234720140561876
SPSRELCPP	9	Unmodified	_SPSRELCPP_					0	0	0		nc|ENSG00000215568|Q2WGN9|GAB4	nc|ENSG00000215568|Q2WGN9|GAB4	nc|ENSG00000215568|Q2WGN9|GAB4	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.7843322753906	2	493.242209	984.469866	1.4873	0.0007336	3.3156	0.0016354	4.8029	0.002369	493.24327320991085	42.036	0.44428	39.326	39.177	39.621	-2.7097					12	8	2	0	0	0	0.027462	1	2268	2268		17.365	0	1	11452			54695	15316	45143	45182	59727	59727					-0.022990493596580563
SPSSETKAI	9	Unmodified	_SPSSETKAI_					0	0	0			REV__ENSG00000102098|ENST00000251900|SCML2	REV__ENSG00000102098|ENST00000251900|SCML2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	459.2574157714844	2	460.24019	918.465826	-0.23595	-0.00010859	0.19956	9.1846E-05	-0.036388	-1.6747E-05	460.2401726976102	47.468	1.059	44.36	44.133	45.192	-3.1077					35	20	3	0	0	0	0.027462	1	2584	2584		21.96	0	1	117790	+		54696	17537	45144	45183	59728	59728					0.0033318441828669165
SPSSGRTKPQ	10	Unmodified	_SPSSGRTKPQ_					0	0	0			REV__ENST00000554913.5_1_14:104177508-104177865:-|nuORF	REV__ENST00000554913.5_1_14:104177508-104177865:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.307373046875	2	522.775262	1043.53597	-0.80593	-0.00042132	0.77575	0.00040554	-0.030182	-1.5778E-05	522.7755036772239	23.911	0.2438	23.911	23.793	24.036	0					8	4	2	0	0	0	0.02663	1	400	400		35.152	0	1	37844	+		54697	27536	45145	45184	59729	59729					0.01594482806740416
SPSSKGKQL	9	Unmodified	_SPSSKGKQL_					0	0	0			REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|54|1|sense	REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|54|1|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.2648010253906	2	466.263999	930.513445	0.33405	0.00015576	-1.4311	-0.00066728	-1.0971	-0.00051152	466.2631676719331	60.203	0.78593	56.773	56.309	57.095	-3.43					51	15	5	0	0	0	0.19758	1	4075	4075		76.774	4.8967	1	2387300	+		54698	28214	45146	45185	59730	59730					0.045408834091631434
SPSSKYVKL	9	Unmodified	_SPSSKYVKL_					0	0	0		nc|ENSG00000110906|Q9H3F6-2|KCTD10;ENSG00000110906|ENST00000228495|KCTD10;ENST00000538377.1_1_12:109907257-109915067:-|nuORF;ENST00000535747.5_1_12:109898344-109915067:-|nuORF	nc|ENSG00000110906|Q9H3F6-2|KCTD10	nc|ENSG00000110906|Q9H3F6-2|KCTD10	MULTI-MSMS	OvCa9_classI_Rep2	2	504.78948974609375	2	504.78985	1007.56515	-1.5143	-0.00076442	1.2074	0.0006095	-0.30689	-0.00015492	504.79037457999766	54.562	1.2968	51.748	51.375	52.671	-2.8139					67	25	4	0	0	0	0.1149	4	3754	3745;3749;3754;3761		93.143	34.913	1	416460			54699	2802	45147	45186	59731;59732;59733;59734	59733					0.06166627103038991
SPSSKYVKL	9	Unmodified	_SPSSKYVKL_					0	0	0		nc|ENSG00000110906|Q9H3F6-2|KCTD10;ENSG00000110906|ENST00000228495|KCTD10;ENST00000538377.1_1_12:109907257-109915067:-|nuORF;ENST00000535747.5_1_12:109898344-109915067:-|nuORF	nc|ENSG00000110906|Q9H3F6-2|KCTD10	nc|ENSG00000110906|Q9H3F6-2|KCTD10	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.7907409667969	2	504.78985	1007.56515	-1.3667	-0.00068989	0.97009	0.00048969	-0.39658	-0.00020019	504.79021345345154	54.968	1.7279	51.721	51.439	53.167	-3.2474					87	33	4	0	0	0	0.1243	1	3446	3446		90.601	13.827	1	1388400			54700	2802	45147	45186	59735	59735					0.06166627103038991
SPSSPVSRVV	10	Unmodified	_SPSSPVSRVV_					0	0	0		ENST00000576679.1_2_17:79781125-79782334:-|nuORF	ENST00000576679.1_2_17:79781125-79782334:-|nuORF	ENST00000576679.1_2_17:79781125-79782334:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7735595703125	2	507.782556	1013.55056	2.1524	0.0010929	-1.0616	-0.00053907	1.0908	0.00055387	507.78163202592435	76.446	0.72537	76.446	76.115	76.841	0					22	17	2	0	0	0	0.027021	1	7684	7684		15.642	0	1	304370			54701	13950	45148	45187	59736	59736					0.04432554954917123
SPSVPLVI	8	Unmodified	_SPSVPLVI_					0	0	0		nc|ENSG00000121753|O60241-4|ADGRB2;nc|ENSG00000121753|O60241-3|ADGRB2;nc|ENSG00000121753|O60241-2|ADGRB2;ENSG00000121753|ENST00000373658|ADGRB2	nc|ENSG00000121753|O60241-4|ADGRB2	nc|ENSG00000121753|O60241-4|ADGRB2	MULTI-MSMS	OvCa9_classI_Rep2	2	406.2501220703125	2	406.249829	810.485105	-3.2754	-0.0013306	-1.4449	-0.00058698	-4.7203	-0.0019176	406.2498729767235	157.19	0.47873	156.96	156.65	157.13	-0.22696					18	10	3	0	0	0	0.74595	1	16003	16003		14.664	0	1	16591			54702	3498	45149	45188	59737	59737					0.07228185499855044
SPSVSLGLAI	10	Unmodified	_SPSVSLGLAI_					0	0	0			REV__ENST00000262803.9_1_19:18978594-18978843:+|nuORF	REV__ENST00000262803.9_1_19:18978594-18978843:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.2769775390625	2	472.276575	942.538597	0.43065	0.00020338	-0.7507	-0.00035454	-0.32005	-0.00015115	472.2760494379954	62.742	1.0695	59.284	58.864	59.933	-3.4577					51	21	3	0	0	0	0.55359	1	4383	4383		47.657	0	1	775190	+		54703	23985	45150	45189	59738	59738					0.06502938211713172
SPSWFTGVI	9	Unmodified	_SPSWFTGVI_					0	0	0			REV__ENST00000549302.1_1_12:101799535-101801423:-|nuORF	REV__ENST00000549302.1_1_12:101799535-101801423:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	497.2539367675781	2	497.255643	992.496732	-0.63304	-0.00031478	-1.6996	-0.00084513	-2.3326	-0.0011599	497.2538520224861	76.605	2.301	74.751	74.149	76.45	-1.854					113	43	4	0	0	0	0.27546	1	6336	6336		65.803	2.8247	1	560020	+		54704	27455	45151	45190	59739	59739					0.00018382523194304667
SPSYRPNAL	9	Unmodified	_SPSYRPNAL_					0	0	0			REV__ENSG00000197653|ENST00000673944|DNAH10	REV__ENSG00000197653|ENST00000673944|DNAH10	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.7643127441406	2	502.761623	1003.50869	-0.43024	-0.00021631	2.9428	0.0014796	2.5126	0.0012632	502.7630183578163	61.859	1.2959	58.401	57.963	59.259	-3.4577					72	26	4	0	0	0	0.19758	1	4275	4275		76.774	12.567	1	1046700	+		54705	22941	45152	45191	59740	59740					0.007079992663648227
SPTAIRTLI	9	Unmodified	_SPTAIRTLI_					0	0	0		nc|ENSG00000144712|O75155-2|CAND2;ENSG00000144712|ENST00000456430|CAND2	nc|ENSG00000144712|O75155-2|CAND2	nc|ENSG00000144712|O75155-2|CAND2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.2652587890625	2	486.297842	970.581131	-0.63369	-0.00030816	1.5304	0.00074421	0.89667	0.00043605	486.29832672611906	69.486	0.58714	66.004	65.614	66.201	-3.4812					17	11	2	0	0	0	0.027441	1	5159	5159		49.442	0	1	23857			54706	5176	45153	45192	59741	59741					0.09466333339958055
SPTARLALA	9	Unmodified	_SPTARLALA_					0	0	0			REV__nc|ENSG00000293316|O95397|PLEKHA8P1	REV__nc|ENSG00000293316|O95397|PLEKHA8P1	MULTI-MSMS	OvCa9_classI_Rep2	2	450.2696838378906	2	450.269084	898.523616	1.3254	0.0005968	-1.7002	-0.00076554	-0.37475	-0.00016874	450.2680012991639	61.146	3.3168	58.387	57.67	60.987	-2.7593					139	63	5	0	0	0	0.27001	3	4557	4521;4545;4557		66.429	8.618	1	6706400	+		54707	23896	45154	45193	59742;59743;59744	59744					0.07029491134369437
SPTARLALA	9	Unmodified	_SPTARLALA_					0	0	0			REV__nc|ENSG00000293316|O95397|PLEKHA8P1	REV__nc|ENSG00000293316|O95397|PLEKHA8P1	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.2703552246094	2	450.269084	898.523616	0.66588	0.00029983	-1.2562	-0.00056561	-0.59027	-0.00026578	450.2683337986321	61.743	3.9648	58.286	57.567	61.531	-3.4577					187	81	5	0	0	0	0.24951	2	4237	4237;4261		68.787	13.283	1	30469000	+		54708	23896	45154	45193	59745;59746	59745					0.07029491134369437
SPTARLALA	9	Unmodified	_SPTARLALA_					0	0	0			REV__nc|ENSG00000293316|O95397|PLEKHA8P1	REV__nc|ENSG00000293316|O95397|PLEKHA8P1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	450.269084	898.523616	0.65831	0.00029642	-0.89145	-0.00040139	-0.23314	-0.00010498	450.26864175685483	58.057	0.33522	58.057	57.859	58.194	0	-0.20331	0.00070913	NaN	68.787	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267770	+		54709	23896	45154	45193							0.07029491134369437
SPTELRPTL	9	Unmodified	_SPTELRPTL_					0	0	0		ENSG00000167291|ENST00000310924|TBC1D16	ENSG00000167291|ENST00000310924|TBC1D16	ENSG00000167291|ENST00000310924|TBC1D16	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.7508239746094	2	507.284931	1012.55531	-0.45997	-0.00023333	-0.83258	-0.00042236	-1.2926	-0.00065569	507.2845645930218	79.124	0.61874	76.372	76.085	76.703	-2.7514					29	12	3	0	0	0	0.027462	1	6385	6385		20.947	0	1	117510			54710	6777	45155	45194	59747	59747					0.04953439097675982
SPTGMLTIVD	10	Unmodified	_SPTGMLTIVD_					0	0	0			REV__nc|ENSG00000160058|Q9NW68-2|BSDC1	REV__nc|ENSG00000160058|Q9NW68-2|BSDC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2695922851562	2	517.26535	1032.51615	2.1493	0.0011118	-2.3678	-0.0012248	-0.21845	-0.000113	517.2642005142363	86.847	0.29362	86.847	86.594	86.888	0					8	6	2	0	0	0	0.026849	1	9172	9172		40.778	0	1	589950	+		54711	20635	45156	45195	59748	59748					0.0011897075178239902
SPTLRSGGSL	10	Unmodified	_SPTLRSGGSL_					0	0	0		ENST00000565743.1_1_16:84682580-84682835:+|nuORF	ENST00000565743.1_1_16:84682580-84682835:+|nuORF	ENST00000565743.1_1_16:84682580-84682835:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.76788330078125	2	487.766906	973.519259	0.41329	0.00020159	-0.51697	-0.00025216	-0.10369	-5.0575E-05	487.76651967759864	64.704	1.6989	61.219	60.724	62.423	-3.4854					53	34	3	0	0	0	0.17251	1	4611	4611		98.582	5.3865	1	977280			54712	13828	45157	45196	59749	59749					0.0314398192082308
SPTRTVGTM	9	Unmodified	_SPTRTVGTM_					0	0	0		ENST00000343958.8_1_12:95611073-95611127:-|nuORF	ENST00000343958.8_1_12:95611073-95611127:-|nuORF	ENST00000343958.8_1_12:95611073-95611127:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.76800537109375	2	475.242209	948.469866	-0.23996	-0.00011404	-3.1731	-0.001508	-3.413	-0.001622	475.24051035244054	35.845	0.78124	35.845	35.429	36.211	0					39	16	3	0	0	0	0.027425	1	1806	1806		51.193	1.7511	1	173770			54713	10605	45158	45197	59750	59750					-0.006430493596553788
SPTTPRSSPL	10	Unmodified	_SPTTPRSSPL_					0	0	0		ENST00000540180.5_1_12:498538-521038:+|nuORF;ENST00000422000.5_1_12:498583-521038:+|nuORF	ENST00000540180.5_1_12:498538-521038:+|nuORF	ENST00000540180.5_1_12:498538-521038:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.781005859375	2	521.780013	1041.54547	-0.16608	-8.6658E-05	-0.13751	-7.1751E-05	-0.30359	-0.00015841	521.7798827964735	66.858	1.3817	63.368	62.951	64.333	-3.4902					80	27	4	0	0	0	0.1722	1	4874	4874		98.629	2.5958	1	1215400			54714	11691	45159	45198	59751	59751					0.026362510922808724
SPTTRYSVT	9	Unmodified	_SPTTRYSVT_					0	0	0			REV__CDYL2|p.L209Kfs*10|1|0.06|ENSG00000166446|chr16:80633229-80633230|-/TGTTTGGATTCTGGGTCTGCCCCTTG|frameshift_variant	REV__CDYL2|p.L209Kfs*10|1|0.06|ENSG00000166446|chr16:80633229-80633230|-/TGTTTGGATTCTGGGTCTGCCCCTTG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.2817687988281	2	506.258914	1010.50327	0.055375	2.8034E-05	-0.88074	-0.00044588	-0.82536	-0.00041785	506.7603344985595	57.115	0.30281	57.115	56.961	57.264	0					9	6	2	0	0	0	0.027462	1	4771	4771		20.947	0	1	186410	+		54715	15775	45160	45199	59752	59752					-0.0015572431608461557
SPTYRALLL	9	Unmodified	_SPTYRALLL_					0	0	0		ENSG00000171700|ENST00000395042|RGS19	ENSG00000171700|ENST00000395042|RGS19	ENSG00000171700|ENST00000395042|RGS19	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3054809570312	2	517.305667	1032.59678	-0.81959	-0.00042398	0.25874	0.00013385	-0.56086	-0.00029013	517.3056700475607	102.45	1.4308	101.76	101.49	102.92	-0.68459					69	28	4	0	0	0	0.094616	1	9433	9433		98.629	29.002	1	350690			54716	7225	45161	45200	59753	59753					0.08178619856994374
SPTYRALLL	9	Unmodified	_SPTYRALLL_					0	0	0		ENSG00000171700|ENST00000395042|RGS19	ENSG00000171700|ENST00000395042|RGS19	ENSG00000171700|ENST00000395042|RGS19	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.3048095703125	2	517.305667	1032.59678	-0.75634	-0.00039126	0.8997	0.00046542	0.14336	7.4159E-05	517.3056750810155	104.09	1.6133	101.97	101.48	103.1	-2.1192					84	30	4	0	0	0	0.1804	2	9418	9408;9418		79.713	8.7828	1	395130			54717	7225	45161	45200	59754;59755	59755					0.08178619856994374
SPTYRALLL	9	Unmodified	_SPTYRALLL_					0	0	0		ENSG00000171700|ENST00000395042|RGS19	ENSG00000171700|ENST00000395042|RGS19	ENSG00000171700|ENST00000395042|RGS19	MULTI-MATCH	OvCa9_classI_Rep3	3		2	517.305667	1032.59678	0.59851	0.00030961	-0.19869	-0.00010278	0.39982	0.00020683	517.3049420550722	103.45	1.4683	102.01	101.5	102.97	-1.4347	0.097964	-0.00050793	NaN	98.629	95	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	432760			54718	7225	45161	45200							0.08178619856994374
SPVDIRPQL	9	Unmodified	_SPVDIRPQL_					0	0	0		ENSG00000107159|ENST00000378357|CA9	ENSG00000107159|ENST00000378357|CA9	ENSG00000107159|ENST00000378357|CA9	MSMS	OvCa9_classI_Rep4_	4	512.7937622070312	2	512.792924	1023.57129	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.849	1	88.274	87.774	88.774	-2.575								0	0	0	0.023656	1	7839	7839		98.629	34.422	1				54719	2590	45162	45201	59756	59756					0.0604514533456495
SPVFRLETL	9	Unmodified	_SPVFRLETL_					0	0	0		ENSG00000187688|ENST00000338560|TRPV2;TRPV2|p.E582Gfs*74|1|0.57|ENSG00000187688|chr17:16432052-16432053|-/A|frameshift_variant	ENSG00000187688|ENST00000338560|TRPV2	ENSG00000187688|ENST00000338560|TRPV2	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.3025512695312	2	531.303124	1060.5917	-0.47153	-0.00025052	-0.015723	-8.3534E-06	-0.48725	-0.00025888	531.3030059110603	109.74	1.4218	108.14	107.8	109.23	-1.6011					62	26	3	0	0	0	0.084918	1	10085	10085		101.25	28.373	1	216650			54720	8424	45163	45202	59757	59757					0.06382315994392229
SPVFRLETL	9	Unmodified	_SPVFRLETL_					0	0	0		ENSG00000187688|ENST00000338560|TRPV2;TRPV2|p.E582Gfs*74|1|0.57|ENSG00000187688|chr17:16432052-16432053|-/A|frameshift_variant	ENSG00000187688|ENST00000338560|TRPV2	ENSG00000187688|ENST00000338560|TRPV2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	531.303124	1060.5917	-0.73552	-0.00039079	0.34436	0.00018296	-0.39117	-0.00020783	531.3031695884159	108.22	1.5834	108	107.73	109.31	-0.22498	-0.047227	0.00038381	NaN	101.25	65	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157810			54721	8424	45163	45202							0.06382315994392229
SPVFRLETL	9	Unmodified	_SPVFRLETL_					0	0	0		ENSG00000187688|ENST00000338560|TRPV2;TRPV2|p.E582Gfs*74|1|0.57|ENSG00000187688|chr17:16432052-16432053|-/A|frameshift_variant	ENSG00000187688|ENST00000338560|TRPV2	ENSG00000187688|ENST00000338560|TRPV2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	531.303124	1060.5917	0.049742	2.6428E-05	-0.50314	-0.00026732	-0.4534	-0.00024089	531.3027578674839	109.19	1.3655	107.99	107.67	109.03	-1.1978	-0.053019	-0.00051674	NaN	101.25	59	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	206580			54722	8424	45163	45202							0.06382315994392229
SPVGRTSLI	9	Unmodified	_SPVGRTSLI_					0	0	0			REV__ENST00000567887.5_2_1:39775352-39775975:+|nuORF	REV__ENST00000567887.5_2_1:39775352-39775975:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	466.27264404296875	2	465.274367	928.53418	-1.2095	-0.00056276	1.0939	0.00050898	-0.1156	-5.3784E-05	465.27462145123394	86.791	0.3031	84.614	84.431	84.734	-2.1768					7	5	2	0	0	0	0.027462	1	5191	5191		12.207	0	1	16183	+		54723	27710	45164	45203	59758	59758					0.06705473788815652
SPVHRSSGLL	10	Unmodified	_SPVHRSSGLL_					0	0	0		ENST00000437634.1_1_2:154277901-154278186:-|nuORF	ENST00000437634.1_1_2:154277901-154278186:-|nuORF	ENST00000437634.1_1_2:154277901-154278186:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2581787109375	2	526.795998	1051.57744	-1.0017	-0.00052768	2.8789	0.0015166	1.8772	0.00098889	526.7963433630715	42.133	0.1751	42.133	42.024	42.199	0					6	3	2	0	0	0	0.026956	1	2680	2680		34.173	8.5985	1	38935			54724	11888	45165	45204	59759	59759					0.05371663566120333
SPVLKRRP	8	Unmodified	_SPVLKRRP_					0	0	0		ENST00000602705.1_1_16:67691044-67691418:+|nuORF;ENST00000602368.1_3_16:67688780-67691418:+|nuORF;nc|ENSG00000159753|Q6F5E8-2|CARMIL2;ENSG00000159753|ENST00000334583|CARMIL2	ENST00000602705.1_1_16:67691044-67691418:+|nuORF	ENST00000602705.1_1_16:67691044-67691418:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	476.8061218261719	2	476.806168	951.597784	0.28578	0.00013626	-0.46686	-0.0002226	-0.18107	-8.6337E-05	476.80579878083404	40.986	1.3783	38.276	37.848	39.226	-2.7097					68	27	3	0	0	0	0.73288	1	2116	2116		35.201	3.2459	1	368580			54725	6027	45166	45205	59760	59760					0.12004879016558334
SPVLPLSTV	9	Unmodified	_SPVLPLSTV_					0	0	0		ENST00000590949.5_1_17:40439920-40440070:+|nuORF	ENST00000590949.5_1_17:40439920-40440070:+|nuORF	ENST00000590949.5_1_17:40439920-40440070:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	456.7727355957031	2	456.773668	911.532783	1.8805	0.00085895	-3.0891	-0.001411	-1.2086	-0.00055204	456.7712837632454	41.607	1.2326	38.897	38.586	39.818	-2.7097					57	24	4	0	0	0	0.61208	1	2202	2202		30.504	0.18592	1	143280			54726	14114	45167	45206	59761	59761					0.07347839700059922
SPVLSLRTHQK	11	Unmodified	_SPVLSLRTHQK_					0	0	0		ENST00000489609.5_1_3:75472285-75480052:-|nuORF;ENST00000478666.5_1_3:75472114-75480052:-|nuORF	ENST00000489609.5_1_3:75472285-75480052:-|nuORF	ENST00000489609.5_1_3:75472285-75480052:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3685302734375	2	633.369861	1264.72517	-4.1446	-0.0026251	2.9938	0.0018962	-1.1508	-0.00072888	633.3716506579397	149.94	3.0119	148.99	147.85	150.86	-0.9512					218	59	5	0	0	0	0.72479	1	12776	12776		18.262	0.79408	1	281260			54727	12496	45168	45207	59762	59762					0.1033955510006308
SPVNRRNR	8	Unmodified	_SPVNRRNR_					0	0	0			REV__nc|ENSG00000168071|A6NC98-5|CCDC88B	REV__nc|ENSG00000168071|A6NC98-5|CCDC88B	MULTI-MSMS	OvCa9_classI_Rep2	2	499.7854309082031	2	499.783756	997.552959	-1.5965	-0.00079791	3.8067	0.0019025	2.2102	0.0011046	499.78564840944136	117.8	1.092	117.66	117.24	118.33	-0.14755					51	21	4	0	0	0	0.70469	1	11317	11317		42.396	3.59	1	123670	+		54728	28988	45169	45208	59763	59763					0.054084482032294545
SPVPEVTT	8	Unmodified	_SPVPEVTT_					0	0	0		ENST00000487682.5_1_1:156909295-156909928:-|nuORF	ENST00000487682.5_1_1:156909295-156909928:-|nuORF	ENST00000487682.5_1_1:156909295-156909928:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.89794921875	2	415.218726	828.422899	0.029108	1.2086E-05	-3.0701	-0.0012748	-3.041	-0.0012627	415.21736209195535	28.663	0.25002	28.663	28.539	28.789	0					7	4	2	0	0	0	0.028476	1	955	955		40.573	0	1	32595			54729	12653	45170	45209	59764	59764					0.0018241436084736051
SPVRKLPR	8	Unmodified	_SPVRKLPR_					0	0	0		ENST00000532843.1_1_11:36398008-36400933:+|nuORF;ENST00000530252.1_1_11:36398008-36422672:+|nuORF;ENST00000526682.5_1_11:36398008-36415533:+|nuORF	ENST00000532843.1_1_11:36398008-36400933:+|nuORF	ENST00000532843.1_1_11:36398008-36400933:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.80572509765625	2	476.806168	951.597784	-0.54019	-0.00025756	-0.3732	-0.00017794	-0.91338	-0.00043551	476.80595009891266	41.29	1.8569	38.309	37.918	39.775	-2.9804					79	35	3	0	0	0	0.64026	1	1827	1827		55.504	3.205	1	1153600			54730	13224	45171	45210	59765	59765					0.12004879016569703
SPVRPQKSN	9	Unmodified	_SPVRPQKSN_					0	0	0			REV__BCOR|p.H776Qfs*50|1|0.19|ENSG00000183337|chrX:40073018-40073019|-/GTCGAGACTGGCAACCCTAGGTTCTCTT|frameshift_variant	REV__BCOR|p.H776Qfs*50|1|0.19|ENSG00000183337|chrX:40073018-40073019|-/GTCGAGACTGGCAACCCTAGGTTCTCTT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.8209533691406	2	506.780348	1011.54614	0.10814	5.4804E-05	3.8905	0.0019716	3.9986	0.0020264	506.7818765965007	69.203	1.5402	66.388	66.013	67.553	-2.8143					42	30	2	0	0	0	0.027462	1	3122	3122		44.377	5.1244	1	19461	+		54731	15698	45172	45211	59766	59766					0.040830905320035527
SPVSYNQNLT	10	Unmodified	_SPVSYNQNLT_					0	0	0		ENST00000584176.1_1_17:72843434-72846906:-|nuORF;ENSG00000161509|ENST00000293190|GRIN2C	ENST00000584176.1_1_17:72843434-72846906:-|nuORF	ENST00000584176.1_1_17:72843434-72846906:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.7786254882812	2	561.774928	1121.5353	3.5798	0.002011	2.9254	0.0016434	6.5051	0.0036544	561.7765558237911	136.61	1.0204	135.07	134.74	135.76	-1.5437					38	20	3	0	0	0	0.69073	1	13259	13259		31.53	0	1	65579			54732	6129	45173	45212	59767	59767					-0.02060356632955518
SPVTTPLPL	9	Unmodified	_SPVTTPLPL_					0	0	0			REV__chr11:64235500-64237420|100|20.62|0.05|8.78|+|2|VEGFB,VEGFB|1	REV__chr11:64235500-64237420|100|20.62|0.05|8.78|+|2|VEGFB,VEGFB|1	MULTI-MSMS	OvCa9_classI_Rep2	2	462.77166748046875	2	462.773668	923.532783	-1.9809	-0.0009167	-1.2212	-0.00056512	-3.202	-0.0014818	462.77307246916536	37.809	0.68848	35.1	34.781	35.469	-2.7097					48	13	5	0	0	0	0.50149	1	1749	1749		42.396	5.237	1	1223600	+		54733	15865	45174	45213	59768	59768					0.06795839700043871
SPVVIVPSR	9	Unmodified	_SPVVIVPSR_					0	0	0		ENST00000337147.11_1_6:159187651-159187804:-|nuORF	ENST00000337147.11_1_6:159187651-159187804:-|nuORF	ENST00000337147.11_1_6:159187651-159187804:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	476.8064880371094	2	477.292559	952.570566	-0.37406	-0.00017853	0.36921	0.00017622	-0.0048436	-2.3118E-06	477.29256165298614	40.037	1.3362	37.327	37.102	38.438	-2.7097					38	26	2	0	0	0	0.027462	1	2110	2110		53.351	21.397	1	61985			54734	10518	45175	45214	59769	59769					0.09238350685518526
SPVVRVAV	8	Unmodified	_SPVVRVAV_					0	0	0		ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	ENSG00000167658|ENST00000309311|EEF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	413.76165771484375	2	413.760895	825.507237	0.06819	2.8214E-05	-0.011834	-4.8964E-06	0.056356	2.3318E-05	413.7607324998981	74.496	1.5427	71.265	70.906	72.449	-3.2308					70	31	4	0	0	0	0.42649	1	5835	5835		84.916	21.609	1	709900			54735	6826	45176	45215	59770	59770					0.08750409968286021
SPVVVIPAE	9	Unmodified	_SPVVVIPAE_					0	0	0		HIP1|p.R940Sfs*47|1|0.08|ENSG00000127946|chr7:75542924-75542925|-/T|frameshift_variant;nc|ENSG00000127946|O00291-3|HIP1;nc|ENSG00000127946|O00291-4|HIP1;ENSG00000127946|ENST00000336926|HIP1	HIP1|p.R940Sfs*47|1|0.08|ENSG00000127946|chr7:75542924-75542925|-/T|frameshift_variant	HIP1|p.R940Sfs*47|1|0.08|ENSG00000127946|chr7:75542924-75542925|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	455.2440490722656	2	455.765843	909.517133	0.31659	0.00014429	1.0502	0.00047866	1.3668	0.00062296	455.7660929847677	59.408	1.2442	56.016	55.249	56.494	-3.392					38	24	2	0	0	0	0.027462	1	3899	3899		10.866	0	1	45724			54736	3851	45177	45216	59771	59771					0.05875553183000193
SPVYFLVF	8	Unmodified	_SPVYFLVF_					0	0	0			REV__ENST00000555683.1_1_14:35005185-35005302:-|nuORF	REV__ENST00000555683.1_1_14:35005185-35005302:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.2968444824219	2	486.265479	970.516405	-0.80164	-0.00038981	0.46238	0.00022484	-0.33926	-0.00016497	486.2656379293987	67.689	0.98746	65.028	64.397	65.384	-2.661					28	19	2	0	0	0	0.028476	1	5233	5233		28.254	19.432	1	60001	+		54737	27546	45178	45217	59772	59772					0.029967585339591096
SPVYYTSLL	9	Unmodified	_SPVYYTSLL_					0	0	0			REV__ENST00000536269.1_1_11:61009265-61011930:+|nuORF	REV__ENST00000536269.1_1_11:61009265-61011930:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.7755737304688	2	521.776408	1041.53826	-0.58747	-0.00030653	-3.7021	-0.0019317	-4.2895	-0.0022382	521.7744110765533	74.659	1.2063	71.428	71.047	72.253	-3.2308					57	24	4	0	0	0	0.55588	1	5855	5855		37.159	1.9584	1	462690	+		54738	27295	45179	45218	59773	59773					0.019155184918645318
SPWAPAWTP	9	Unmodified	_SPWAPAWTP_					0	0	0		ENSG00000269855|ENST00000601382|RNF225	ENSG00000269855|ENST00000601382|RNF225	ENSG00000269855|ENST00000601382|RNF225	MULTI-MSMS	OvCa99_classI_Rep5	1	506.7484130859375	2	506.747985	1011.48142	0.59942	0.00030376	0.41702	0.00021132	1.0164	0.00051508	506.74801300411247	141.13	0.95381	141.13	140.78	141.74	0					51	18	4	0	0	0	0.46377	1	16473	16473		45.952	0	1	410360			54739	9543	45180	45219	59774	59774					-0.023864842740067616
SPWLTRQRPF	10	Unmodified	_SPWLTRQRPF_					0	0	0			REV__SVA_D_dup1417|chr21:8350923-8352925:-|16.64451059665088|0.0287746324772857|9.18|429.0|75|3|anti-sense	REV__SVA_D_dup1417|chr21:8350923-8352925:-|16.64451059665088|0.0287746324772857|9.18|429.0|75|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	644.3488159179688	2	644.351471	1286.68839	-6.1065	-0.0039348	3.487	0.0022469	-2.6195	-0.0016879	644.3535517231257	156.22	1.1461	155.15	154.82	155.96	-1.073					70	25	4	0	0	0	0.72319	1	13444	13444		27.882	2.3082	1	162170	+		54740	29477	45181	45220	59775	59775					0.05651303274157726
SPWSVLIND	9	Unmodified	_SPWSVLIND_					0	0	0		tr|A0A7D6VVP1|A0A7D6VVP1_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04180PE=4SV=1	tr|A0A7D6VVP1|A0A7D6VVP1_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04180PE=4SV=1	tr|A0A7D6VVP1|A0A7D6VVP1_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04180PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.3085327148438	2	515.763832	1029.51311	0.36166	0.00018653	1.9214	0.00099101	2.2831	0.0011775	515.764258078056	99.164	0.71796	97.479	97.009	97.727	-1.685					20	13	2	0	0	0	0.027455	1	6628	6628		34.173	2.6427	1	12914			54741	35229	45182	45221	59776	59776					-0.0004653631069686526
SPWVYSLVVAL	11	Unmodified	_SPWVYSLVVAL_					0	0	0			REV__tr|A0A7D7A4U7|A0A7D7A4U7_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_03375PE=4SV=1	REV__tr|A0A7D7A4U7|A0A7D7A4U7_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_03375PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	617.3456420898438	2	617.347532	1232.68051	-0.81825	-0.00050514	-2.8677	-0.0017704	-3.686	-0.0022755	617.3457004863567	105.95	1.8422	105.51	105	106.84	-0.43642					119	36	4	0	0	0	0.34475	1	9869	9869		39.253	0	1	806120	+		54742	32618	45183	45222	59777	59777					0.07347731234040111
SPYFGRQAMA	10	Unmodified	_SPYFGRQAMA_					0	0	0			REV__ENST00000564715.1_1_16:66998410-67000377:+|nuORF	REV__ENST00000564715.1_1_16:66998410-67000377:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.846923828125	2	564.268758	1126.52296	0.20134	0.00011361	3.7127	0.0020949	3.914	0.0022086	564.2703685076954	30.183	0.49699	30.183	29.986	30.483	0					23	9	4	0	0	0	0.026994	1	1117	1117		32.812	3.6629	1	192930	+		54743	27669	45184	45223	59778	59778					-0.035236715769769944
SPYGGGHAL	9	Unmodified	_SPYGGGHAL_					0	0	0		nc|ENSG00000187634|Q96NU1-6|SAMD11;nc|ENSG00000187634|Q96NU1-4|SAMD11;nc|ENSG00000187634|Q96NU1|SAMD11;nc|ENSG00000187634|Q96NU1-5|SAMD11;ENSG00000187634|ENST00000616016|SAMD11;nc|ENSG00000187634|Q96NU1-1|SAMD11;nc|ENSG00000187634|Q96NU1-2|SAMD11	nc|ENSG00000187634|Q96NU1-6|SAMD11	nc|ENSG00000187634|Q96NU1-6|SAMD11	MULTI-MSMS	OvCa9_classI_Rep4_	4	429.70977783203125	2	429.70886	857.403166	-0.10689	-4.5932E-05	0.16148	6.939E-05	0.054591	2.3458E-05	429.7087974314282	53.279	1.2716	50.071	49.746	51.018	-3.208					57	24	4	0	0	0	0.10416	1	3239	3239		96.048	33.069	1	357310			54744	8421	45185	45224	59779	59779					-0.031239168592492206
SPYGGGHAL	9	Unmodified	_SPYGGGHAL_					0	0	0		nc|ENSG00000187634|Q96NU1-6|SAMD11;nc|ENSG00000187634|Q96NU1-4|SAMD11;nc|ENSG00000187634|Q96NU1|SAMD11;nc|ENSG00000187634|Q96NU1-5|SAMD11;ENSG00000187634|ENST00000616016|SAMD11;nc|ENSG00000187634|Q96NU1-1|SAMD11;nc|ENSG00000187634|Q96NU1-2|SAMD11	nc|ENSG00000187634|Q96NU1-6|SAMD11	nc|ENSG00000187634|Q96NU1-6|SAMD11	MULTI-MATCH	OvCa9_classI_Rep2	2		2	429.70886	857.403166	-1.5297	-0.00065732	1.6985	0.00072985	0.16878	7.2528E-05	429.709491812684	53.119	0.98877	50.305	49.936	50.925	-2.8139	0.11696	0.00057486	NaN	96.048	33	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76499			54745	8421	45185	45224							-0.031239168592492206
SPYIHDQLS	9	Unmodified	_SPYIHDQLS_					0	0	0			REV__FAM193A|p.T577Cfs*75|1|0.32|ENSG00000125386|chr4:2690768-2690769|-/TGTGCAGGCTGTTGCACTGCGCC|frameshift_variant	REV__FAM193A|p.T577Cfs*75|1|0.32|ENSG00000125386|chr4:2690768-2690769|-/TGTGCAGGCTGTTGCACTGCGCC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.3072509765625	2	530.258914	1058.50327	-0.51868	-0.00027504	-2.0923	-0.0011095	-2.611	-0.0013845	530.2585809102084	59.944	0.24335	56.514	56.407	56.65	-3.43					5	4	2	0	0	0	0.027462	1	4025	4025		19.997	0	1	8274.8	+		54746	18722	45186	45225	59780	59780					-0.023637243160919752
SPYKGRGWFL	10	Unmodified	_SPYKGRGWFL_					0	0	0			REV__chr1:221918712-221976287|206|38.49|0.18|7.74|-|2|TE_info:HERVH-int,HERVH-int_dup364,ERV1,LTR,donor,-,221976287,221978506|LINC02257,None|5	REV__chr1:221918712-221976287|206|38.49|0.18|7.74|-|2|TE_info:HERVH-int,HERVH-int_dup364,ERV1,LTR,donor,-,221976287,221978506|LINC02257,None|5	MULTI-MSMS	OvCa99_classI_Rep5	1	404.2195739746094	3	404.217102	1209.62948	3.2514	0.0013143	1.5781	0.00063788	4.8295	0.0019522	404.2178648039015	90.477	4.4615	90.477	90.186	94.648	0					287	107	5	0	0	0	0.61634	1	9902	9902		40.058	0.80534	1	88373000	+		54747	15821	45187	45226	59781	59781					0.03304826979842801
SPYLRPLEKI	10	Unmodified	_SPYLRPLEKI_					0	0	0		PHF20|p.A984Vfs*15|1|0.19|ENSG00000025293|chr20:35947538-35947539|-/TT|frameshift_variant;ENSG00000025293|ENST00000374012|PHF20;ENST00000481202.5_1_20:34389438-34450945:+|nuORF;PHF20-EPB41L1|2|fusion;PHF20-EPB41L1|3|fusion;nc|ENSG00000025293|Q9BVI0-2|PHF20;PHF20-EPB41L1|1|fusion	PHF20|p.A984Vfs*15|1|0.19|ENSG00000025293|chr20:35947538-35947539|-/TT|frameshift_variant	PHF20|p.A984Vfs*15|1|0.19|ENSG00000025293|chr20:35947538-35947539|-/TT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	405.8679504394531	3	405.908046	1214.70231	1.4725	0.00059771	-0.056847	-2.3075E-05	1.4157	0.00057464	405.90782454359936	59.172	0.89363	55.78	55.502	56.396	-3.392					26	17	2	0	0	0	0.026968	1	3928	3928		29.17	8.3329	1	55202			54748	1046	45188	45227	59782	59782					0.10354535982605739
SPYLRPLTL	9	Unmodified	_SPYLRPLTL_					0	0	0		ENST00000339418.9_1_14:105642869-105647546:-|nuORF;ENST00000551024.5_1_14:105642305-105647594:-|nuORF;ENSG00000183828|ENST00000392568|NUDT14	ENST00000339418.9_1_14:105642869-105647546:-|nuORF	ENST00000339418.9_1_14:105642869-105647546:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	530.3106079101562	2	530.313492	1058.61243	-1.2538	-0.00066489	-0.7644	-0.00040537	-2.0182	-0.0010703	530.3127196787224	104.66	1.4876	104.09	103.77	105.26	-0.57639					94	29	4	0	0	0	0.036986	7	9699	9693;9699;9706;9712;9720;9726;9732		129.42	47.181	1	1734300			54749	8113	45189	45228	59783;59784;59785;59786;59787;59788;59789	59784					0.08546906374044738
SPYPTKTQTM	10	Unmodified	_SPYPTKTQTM_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;RPN1|p.R263Tfs*3|1|0.4|ENSG00000163902|chr3:128632004-128632005|-/T|frameshift_variant	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	577.8318481445312	2	577.281531	1152.54851	-1.4745	-0.00085122	1.6736	0.00096616	0.19911	0.00011494	577.2822577499096	55.349	0.86512	52.054	51.803	52.668	-3.2944					43	16	4	0	0	0	0.026674	1	3477	3477		65.465	14.273	1	627260			54750	6376	45190	45229	59790	59790					-0.021662418452251586
SPYQNIKIL	9	Unmodified	_SPYQNIKIL_					0	0	0		ENSG00000102172|ENST00000404933|SMS;nc|ENSG00000102172|P52788-2|SMS;ENST00000436365.1_1_X:47577979-47578291:-|nuORF	ENSG00000102172|ENST00000404933|SMS	ENSG00000102172|ENST00000404933|SMS	MULTI-MSMS	OvCa9_classI_Rep2	2	538.3104858398438	2	538.310949	1074.60735	-0.82248	-0.00044275	-0.68243	-0.00036736	-1.5049	-0.00081011	538.310865302894	95.544	1.4887	94.516	94.219	95.707	-1.0281					69	29	5	0	0	0	0.053172	2	8605	8592;8605		116.9	17.221	1	480180			54751	2226	45191	45230	59791;59792	59792					0.0730260251141317
SPYQNIKIL	9	Unmodified	_SPYQNIKIL_					0	0	0		ENSG00000102172|ENST00000404933|SMS;nc|ENSG00000102172|P52788-2|SMS;ENST00000436365.1_1_X:47577979-47578291:-|nuORF	ENSG00000102172|ENST00000404933|SMS	ENSG00000102172|ENST00000404933|SMS	MULTI-MSMS	OvCa9_classI_Rep3	3	538.3121337890625	2	538.310949	1074.60735	0.12204	6.5698E-05	-0.97443	-0.00052455	-0.85239	-0.00045885	538.3105544714867	96.422	1.6226	94.593	94.221	95.844	-1.8286					83	31	5	0	0	0	0.030815	1	6350	6350		134.81	40.804	1	704480			54752	2226	45191	45230	59793	59793					0.0730260251141317
SPYQNIKIL	9	Unmodified	_SPYQNIKIL_					0	0	0		ENSG00000102172|ENST00000404933|SMS;nc|ENSG00000102172|P52788-2|SMS;ENST00000436365.1_1_X:47577979-47578291:-|nuORF	ENSG00000102172|ENST00000404933|SMS	ENSG00000102172|ENST00000404933|SMS	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.3120727539062	2	538.310949	1074.60735	0.37434	0.00020151	-1.2231	-0.00065839	-0.84872	-0.00045688	538.31049958104	96.975	1.3571	94.549	94.22	95.577	-2.4256					72	26	5	0	0	0	0.045281	2	8580	8580;8591		122.18	26.361	1	637690			54753	2226	45191	45230	59794;59795	59794					0.0730260251141317
SQAAAKLAL	9	Unmodified	_SQAAAKLAL_					0	0	0		ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	ENSG00000143614|ENST00000368655|GATAD2B	MULTI-MSMS	OvCa99_classI_Rep5	1	436.7650146484375	2	436.763635	871.512717	0.49454	0.000216	-0.3951	-0.00017257	0.099435	4.343E-05	436.76333990362633	66.448	0.80263	66.448	66.174	66.977	0					37	19	3	0	0	0	0.075543	2	6158	6158;6186		104.06	13.687	1	2589300			54754	5076	45192	45231	59796;59797	59796					0.07182088760066563
SQADVHRQI	9	Unmodified	_SQADVHRQI_					0	0	0		ENSG00000104856|ENST00000221452|RELB;ENST00000509229.1_1_19:45535724-45537626:+|nuORF	ENSG00000104856|ENST00000221452|RELB	ENSG00000104856|ENST00000221452|RELB	MULTI-MSMS	OvCa99_classI_Rep5	1	527.2749633789062	2	527.275429	1052.53631	-1.1992	-0.0006323	1.1016	0.00058086	-0.097555	-5.1439E-05	527.27604100241	34.328	0.61085	34.328	34.161	34.772	0					22	12	2	0	0	0	0.1574	1	1643	1643		83.647	39.27	1	1742500			54755	2400	45193	45232	59798	59798					0.012139025266151293
SQADVHRQV	9	Unmodified	_SQADVHRQV_					0	0	0		nc|ENSG00000173039|Q04206-2|RELA;nc|ENSG00000173039|Q04206-3|RELA;nc|ENSG00000173039|Q04206-4|RELA;ENST00000531484.5_1_11:65421851-65429483:-|nuORF;ENSG00000173039|ENST00000406246|RELA;ENSG00000162924|ENST00000394479|REL;nc|ENSG00000162924|Q04864|REL	nc|ENSG00000173039|Q04206-2|RELA	nc|ENSG00000173039|Q04206-2|RELA	MULTI-MSMS	OvCa99_classI_Rep5	1	520.2676391601562	2	520.267604	1038.52066	-0.75703	-0.00039386	-0.033077	-1.7209E-05	-0.7901	-0.00041106	520.2676057786817	29.859	1.0962	29.859	29.536	30.632	0					52	21	5	0	0	0	0.13326	1	1096	1096		88.177	31.456	1	2389100			54756	7344	45194	45233	59799	59799					0.002936160095487139
SQADVNLKM	9	Unmodified	_SQADVNLKM_					0	0	0		ENSG00000067836|ENST00000322048|ROGDI	ENSG00000067836|ENST00000322048|ROGDI	ENSG00000067836|ENST00000322048|ROGDI	MULTI-MSMS	OvCa99_classI_Rep5	1	503.2565002441406	2	503.255317	1004.49608	-0.56533	-0.00028451	-0.22269	-0.00011207	-0.78802	-0.00039657	503.25505991305835	67.893	0.74397	67.893	67.489	68.233	0					42	18	3	0	0	0	0.051592	1	6373	6373		117.81	32.65	1	4711200			54757	1381	45195	45234	59800	59800					-0.005987801881701671
SQADVNLKM	9	Unmodified	_SQADVNLKM_					0	0	0		ENSG00000067836|ENST00000322048|ROGDI	ENSG00000067836|ENST00000322048|ROGDI	ENSG00000067836|ENST00000322048|ROGDI	MULTI-MATCH	OvCa9_classI_Rep2	2		2	503.255317	1004.49608	-0.13144	-6.6145E-05	-5.6511	-0.0028439	-5.7825	-0.0029101	503.25360738580065	70.828	1.5478	68.257	67.563	69.111	-2.5707	0.066421	-0.0046779	NaN	117.81	81	29	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84446			54758	1381	45195	45234							-0.005987801881701671
SQADVNLKM	9	Unmodified	_SQADVNLKM_					0	0	0		ENSG00000067836|ENST00000322048|ROGDI	ENSG00000067836|ENST00000322048|ROGDI	ENSG00000067836|ENST00000322048|ROGDI	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	503.255317	1004.49608	-1.5379	-0.00077393	-1.5503	-0.00078019	-3.0881	-0.0015541	503.2543877199597	71.878	1.2605	68.422	68.174	69.434	-3.4563	0.23103	-0.00055045	NaN	117.81	56	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	396830			54759	1381	45195	45234							-0.005987801881701671
SQAEIEQKI	9	Unmodified	_SQAEIEQKI_					0	0	0		nc|ENSG00000068028|Q9NS23-9|RASSF1;nc|ENSG00000068028|Q9NS23-4|RASSF1;ENSG00000068028|ENST00000359365|RASSF1;nc|ENSG00000068028|Q9NS23|RASSF1;nc|ENSG00000068028|Q9NS23-5|RASSF1	nc|ENSG00000068028|Q9NS23-9|RASSF1	nc|ENSG00000068028|Q9NS23-9|RASSF1	MULTI-MSMS	OvCa99_classI_Rep5	1	523.2814331054688	2	523.279846	1044.54514	-0.37099	-0.00019413	-0.15828	-8.2824E-05	-0.52926	-0.00027695	523.2797744745774	58.383	0.86571	58.383	58.027	58.892	0					54	20	5	0	0	0	0.010153	1	4943	4943		168.26	35.501	1	10122000			54760	1385	45196	45235	59801	59801					0.02464831372435583
SQAIHQLKV	9	Unmodified	_SQAIHQLKV_					0	0	0		ENSG00000065427|ENST00000302445|KARS1;nc|ENSG00000065427|Q15046-2|KARS1;ENST00000566560.5_1_16:75668010-75682538:-|nuORF;ENST00000565738.1_1_16:75674022-75675473:-|nuORF	ENSG00000065427|ENST00000302445|KARS1	ENSG00000065427|ENST00000302445|KARS1	MULTI-MSMS	OvCa99_classI_Rep5	1	512.30224609375	2	512.300916	1022.58728	-0.62882	-0.00032215	0.10555	5.4075E-05	-0.52327	-0.00026807	512.3007382653044	50.572	1.518	50.572	49.856	51.374	0					59	34	4	0	0	0	0.29519	1	3852	3852		63.534	17.562	1	1294500			54761	1326	45197	45236	59802	59802					0.07688851571481337
SQAKAVLSA	9	Unmodified	_SQAKAVLSA_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	OvCa99_classI_Rep5	1	437.7527770996094	2	437.753267	873.491981	1.424	0.00062338	-0.95273	-0.00041706	0.47131	0.00020632	437.7526610871361	45.731	1.2975	45.731	45.114	46.412	0					53	29	4	0	0	0	0.24899	1	3178	3178		68.846	10.064	1	2346800			54762	5448	45198	45237	59803	59803					0.05017498380414054
SQAKLLAGAV	10	Unmodified	_SQAKLLAGAV_					0	0	0		ENSG00000172775|ENST00000309137|PSME3IP1;ENST00000566403.5_1_16:57188204-57201150:-|nuORF	ENSG00000172775|ENST00000309137|PSME3IP1	ENSG00000172775|ENST00000309137|PSME3IP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.31365966796875	2	479.290017	956.565481	0.16792	8.0482E-05	-0.62086	-0.00029757	-0.45294	-0.00021709	479.2880689568965	31.633	0.14853	31.633	31.559	31.708	0					4	2	2	0	0	0	0.026752	1	1312	1312		44.117	0	1	5596.2			54763	7318	45199	45238	59804	59804					0.0854604682289164
SQANIAQVL	9	Unmodified	_SQANIAQVL_					0	0	0		AP1B1|p.T737Rfs*121|1|0.13|ENSG00000100280|chr22:29334369-29334370|-/CCCA|frameshift_variant;AP1B1|p.G736Afs*18|1|0.18|ENSG00000100280|chr22:29334367-29334368|-/TACCG|frameshift_variant;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000441188.2_1_X:92478653-92479352:-|nuORF;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1	AP1B1|p.T737Rfs*121|1|0.13|ENSG00000100280|chr22:29334369-29334370|-/CCCA|frameshift_variant;nc|ENSG00000006125|P63010-3|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.2679748535156	2	472.263999	942.513445	0.56153	0.00026519	-0.46868	-0.00022134	0.092853	4.3851E-05	472.2638726850155	102.88	1.412	100.68	100.41	101.82	-2.1994					57	26	4	0	0	0	0.16562	1	9275	9275		82.241	13.454	1	226630			54764	97;872	45200	45239	59805	59805					0.03988883409135724
SQANIAQVL	9	Unmodified	_SQANIAQVL_					0	0	0		AP1B1|p.T737Rfs*121|1|0.13|ENSG00000100280|chr22:29334369-29334370|-/CCCA|frameshift_variant;AP1B1|p.G736Afs*18|1|0.18|ENSG00000100280|chr22:29334367-29334368|-/TACCG|frameshift_variant;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000441188.2_1_X:92478653-92479352:-|nuORF;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1	AP1B1|p.T737Rfs*121|1|0.13|ENSG00000100280|chr22:29334369-29334370|-/CCCA|frameshift_variant;nc|ENSG00000006125|P63010-3|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	472.263999	942.513445	-1.2391	-0.00058518	0.99594	0.00047035	-0.24316	-0.00011484	472.2645826846488	101.58	1.783	100.82	100.07	101.85	-0.76401	0.099279	0.00086853	NaN	82.241	79	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87471			54765	97;872	45200	45239							0.03988883409135724
SQANIAQVL	9	Unmodified	_SQANIAQVL_					0	0	0		AP1B1|p.T737Rfs*121|1|0.13|ENSG00000100280|chr22:29334369-29334370|-/CCCA|frameshift_variant;AP1B1|p.G736Afs*18|1|0.18|ENSG00000100280|chr22:29334367-29334368|-/TACCG|frameshift_variant;nc|ENSG00000100280|Q10567-4|AP1B1;nc|ENSG00000100280|Q10567-3|AP1B1;nc|ENSG00000100280|Q10567-2|AP1B1;ENSG00000100280|ENST00000357586|AP1B1;ENST00000441188.2_1_X:92478653-92479352:-|nuORF;nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1	AP1B1|p.T737Rfs*121|1|0.13|ENSG00000100280|chr22:29334369-29334370|-/CCCA|frameshift_variant;nc|ENSG00000006125|P63010-3|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	472.263999	942.513445	-0.017879	-8.4435E-06	-0.11231	-5.3038E-05	-0.13018	-6.1482E-05	472.26404633570473	102.18	1.4623	100.66	100.32	101.78	-1.5211	-0.059296	-0.00017824	NaN	82.241	58	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	264890			54766	97;872	45200	45239							0.03988883409135724
SQARFGQSV	9	Unmodified	_SQARFGQSV_					0	0	0		ENSG00000166275|ENST00000339834|BORCS7	ENSG00000166275|ENST00000339834|BORCS7	ENSG00000166275|ENST00000339834|BORCS7	MULTI-MSMS	OvCa99_classI_Rep5	1	490.2522277832031	2	490.251423	978.488293	-0.62448	-0.00030615	-0.30831	-0.00015115	-0.93279	-0.0004573	490.2514851674661	48.225	1.1338	48.225	47.897	49.031	0					91	25	5	0	0	0	0.0083004	2	3542	3514;3542		204.42	105.05	1	8381600			54767	6660	45201	45240	59806;59807	59807					-0.001811713934216641
SQARQVPR	8	Unmodified	_SQARQVPR_					0	0	0		ENST00000261507.10_1_4:166248809-166254516:+|nuORF	ENST00000261507.10_1_4:166248809-166254516:+|nuORF	ENST00000261507.10_1_4:166248809-166254516:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.79364013671875	2	471.267407	940.520262	1.4308	0.00067427	-1.4283	-0.0006731	0.00249	1.1734E-06	471.2667137462826	33.801	0.4939	31.013	30.805	31.299	-2.7881					12	9	2	0	0	0	0.028476	1	971	971		27.882	10.517	1	14210			54768	9867	45202	45241	59808	59808					0.04762241080379681
SQATMKVAV	9	Unmodified	_SQATMKVAV_					0	0	0		ENSG00000113721|ENST00000261799|PDGFRB;ENST00000520579.5_1_5:149495328-149514444:-|nuORF;ENST00000520229.1_1_5:149504284-149505071:-|nuORF	ENSG00000113721|ENST00000261799|PDGFRB	ENSG00000113721|ENST00000261799|PDGFRB	MULTI-MSMS	OvCa99_classI_Rep5	1	467.75555419921875	2	467.754953	933.495352	-0.24424	-0.00011424	-1.1112	-0.00051978	-1.3555	-0.00063403	467.75433159510914	60.045	1.1728	60.045	59.686	60.859	0					73	28	4	0	0	0	0.16264	1	5234	5234		82.75	8.4954	1	3666300			54769	2990	45203	45242	59809	59809					0.025944251627720405
SQDSKTLKV	9	Unmodified	_SQDSKTLKV_					0	0	0		nc|ENSG00000111799|Q99715-4|COL12A1;ENSG00000111799|ENST00000322507|COL12A1	nc|ENSG00000111799|Q99715-4|COL12A1	nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-MSMS	OvCa99_classI_Rep5	1	503.28240966796875	2	503.282389	1004.55022	-0.63613	-0.00032015	0.29312	0.00014752	-0.34301	-0.00017263	503.28246468334754	36.183	0.45808	36.183	35.984	36.442	0					26	9	4	0	0	0	0.2784	1	1883	1883		65.465	8.7443	1	552370			54770	2854	45204	45243	59810	59810					0.04813135235053778
SQDSKTLKV	9	Unmodified	_SQDSKTLKV_					0	0	0		nc|ENSG00000111799|Q99715-4|COL12A1;ENSG00000111799|ENST00000322507|COL12A1	nc|ENSG00000111799|Q99715-4|COL12A1	nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	503.282389	1004.55022	-0.50106	-0.00025218	-2.7656	-0.0013919	-3.2666	-0.001644	503.78353117022056	39.297	0.19911	36.37	36.196	36.395	-2.9264	0.093559	-0.0029436	NaN	65.465	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10273			54771	2854	45204	45243							0.04813135235053778
SQELRGAAATE	11	Unmodified	_SQELRGAAATE_					0	0	0		nc|ENSG00000164920|Q8N2R0-3|OSR2	nc|ENSG00000164920|Q8N2R0-3|OSR2	nc|ENSG00000164920|Q8N2R0-3|OSR2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.7870483398438	2	566.783284	1131.55202	0.17176	9.735E-05	2.3228	0.0013165	2.4946	0.0014139	567.2874392603975	95.959	0.60905	93.534	93.406	94.015	-2.4256					15	11	2	0	0	0	0.025445	1	8447	8447		35.178	0	1	20317			54772	15149	45205	45244	59811	59811					-0.008498557470147716
SQEQAANEIP	10	Unmodified	_SQEQAANEIP_					0	0	0		ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.7675170898438	2	543.756735	1085.49892	1.2132	0.00065969	-0.38119	-0.00020728	0.83201	0.00045241	543.7562060528879	143.87	0.74083	143.87	143.61	144.35	0					24	14	3	0	0	0	0.026714	1	16829	16829		35.152	3.6222	1	90236			54773	3185	45206	45245	59812	59812					-0.04041233529665078
SQEWLNQTE	9	Unmodified	_SQEWLNQTE_					0	0	0			REV__ALKBH1|p.D142N|1|0.31|ENSG00000100601|chr14:77694769-77694769|C/T|missense_variant	REV__ALKBH1|p.D142N|1|0.31|ENSG00000100601|chr14:77694769-77694769|C/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.2814331054688	2	567.756735	1133.49892	1.3914	0.00078999	1.7905	0.0010165	3.1819	0.0018065	567.7570141746226	109.41	0.30898	109.41	109.24	109.55	0					10	6	2	0	0	0	0.027462	1	12376	12376		2.9294	0	1	99574	+		54774	15590	45207	45246	59813	59813					-0.06249233529638332
SQFEKTRKV	9	Unmodified	_SQFEKTRKV_					0	0	0		ENSG00000013503|ENST00000228347|POLR3B;nc|ENSG00000013503|Q9NW08-2|POLR3B;POLR3B|p.L708Tfs*13|1|0.06|ENSG00000013503|chr12:106454510-106454511|-/GATACAACCAGCGAAACAGAATT|frameshift_variant	ENSG00000013503|ENST00000228347|POLR3B	ENSG00000013503|ENST00000228347|POLR3B	MULTI-MSMS	OvCa99_classI_Rep5	1	561.8160400390625	2	561.81693	1121.61931	0.24733	0.00013895	-0.95147	-0.00053455	-0.70414	-0.0003956	561.8162977016841	29.76	0.70029	29.76	29.536	30.236	0					30	13	4	0	0	0	0.35694	1	1085	1085		56.434	5.2411	1	483870			54775	987	45208	45247	59814	59814					0.06336219254603748
SQFPGTQRL	9	Unmodified	_SQFPGTQRL_					0	0	0		ENST00000463433.1_1_2:238999874-239004239:+|nuORF;ENST00000480357.5_1_2:239002940-239006993:+|nuORF;ENSG00000132330|ENST00000254663|SCLY	ENST00000463433.1_1_2:238999874-239004239:+|nuORF	ENST00000463433.1_1_2:238999874-239004239:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	517.27587890625	2	517.274898	1032.53524	-1.2964	-0.0006706	1.0581	0.00054734	-0.2383	-0.00012326	517.2753553677971	69.853	0.57585	69.853	69.513	70.089	0					37	13	4	0	0	0	0.060996	1	6661	6661		112.41	29.66	1	2761800			54776	4129	45209	45248	59815	59815					0.02027688157704688
SQFPSSKV	8	Unmodified	_SQFPSSKV_					0	0	0		ENST00000564176.5_1_16:31485144-31486093:+|nuORF;ENST00000568142.2_1_16:31484766-31486093:+|nuORF;nc|ENSG00000140682|O43294-2|TGFB1I1;ENST00000567066.6_1_16:31483405-31488894:+|nuORF;ENSG00000140682|ENST00000394863|TGFB1I1	ENST00000564176.5_1_16:31485144-31486093:+|nuORF	ENST00000564176.5_1_16:31485144-31486093:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	440.2333679199219	2	440.232168	878.449782	1.2242	0.00053893	-0.92582	-0.00040758	0.29838	0.00013136	440.2316185322886	52.868	1.1745	52.868	52.434	53.609	0					67	26	4	0	0	0	0.52468	2	4176	4153;4176		75.043	2.1641	1	2623400			54777	4868	45210	45249	59816;59817	59817					0.005695229720458883
SQFSGKITV	9	Unmodified	_SQFSGKITV_					0	0	0		ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	ENSG00000075568|ENST00000186436|TMEM131	MULTI-MSMS	OvCa99_classI_Rep5	1	483.7678527832031	2	483.766374	965.518196	-0.031171	-1.5079E-05	1.2517	0.00060554	1.2206	0.00059046	483.76669993978976	73.537	1.0591	73.537	73.155	74.214	0					69	26	5	0	0	0	0.0441	2	7235	7208;7235		123.21	16.793	1	6618000			54778	1536	45211	45250	59818;59819	59819					0.03405767551896588
SQFSSILQV	9	Unmodified	_SQFSSILQV_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	OvCa99_classI_Rep5	1	504.7749938964844	2	504.771657	1007.52876	0.29632	0.00014957	2.9642	0.0014962	3.2605	0.0016458	504.77296926217747	67.257	3.1662	67.257	64.75	67.916	0					131	79	3	0	0	0	0.24951	1	6286	6286		68.787	2.9837	1	2532100	+		54779	23199	45212	45251	59820	59820					0.02529750206326753
SQGLFTFHAD	10	Unmodified	_SQGLFTFHAD_					0	0	0		CON__REFSEQ:XP_585019	CON__REFSEQ:XP_585019	CON__REFSEQ:XP_585019	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.2996826171875	2	561.764363	1121.51417	1.6921	0.00095056	1.8232	0.0010242	3.5153	0.0019748	562.2667022573473	150.36	0.29747	150.36	150.19	150.49	0					7	5	2	0	0	0	0.02706	1	17596	17596		30.318	7.2752	1	20582		+	54780	668	45213	45252	59821	59821					-0.04172321941814516
SQGQTPQRV	9	Unmodified	_SQGQTPQRV_					0	0	0		nc|ENSG00000185591|P08047-3|SP1;nc|ENSG00000185591|P08047-2|SP1;ENSG00000185591|ENST00000327443|SP1	nc|ENSG00000185591|P08047-3|SP1	nc|ENSG00000185591|P08047-3|SP1	MULTI-MSMS	OvCa99_classI_Rep5	1	500.76214599609375	2	500.762155	999.509757	-0.0081047	-4.0585E-06	-0.75922	-0.00038019	-0.76733	-0.00038425	500.7616578130847	32.129	0.74531	32.129	31.658	32.403	0					39	14	4	0	0	0	0.3249	1	1373	1373		60.118	7.1816	1	690340			54781	8264	45214	45253	59822	59822					0.009982136352846283
SQHDQVTLL	9	Unmodified	_SQHDQVTLL_					0	0	0		ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	ENSG00000126368|ENST00000246672|NR1D1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3048095703125	2	520.772188	1039.52982	-1.4064	-0.00073241	1.6415	0.00085485	0.2351	0.00012243	520.7732592502874	43.187	0.63066	40.179	39.958	40.589	-3.0074					25	11	3	0	0	0	0.027455	1	2077	2077		26.693	0	1	30503			54782	3778	45215	45254	59823	59823					0.01163964575243881
SQHGIHDGL	9	Unmodified	_SQHGIHDGL_					0	0	0		HNRNPK-UBQLN1|1|fusion;HNRNPK-UBQLN1|2|fusion;nc|ENSG00000135018|Q9UMX0-4|UBQLN1;nc|ENSG00000135018|Q9UMX0-2|UBQLN1;ENSG00000135018|ENST00000376395|UBQLN1	HNRNPK-UBQLN1|1|fusion	HNRNPK-UBQLN1|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	482.2353515625	2	482.235773	962.456993	-0.67915	-0.00032751	0.081917	3.9503E-05	-0.59723	-0.00028801	482.23568886113696	37.538	0.5087	37.538	37.298	37.806	0					23	10	3	0	0	0	0.53483	1	2071	2071		39.253	2.0937	1	495360			54783	14486	45216	45255	59824	59824					-0.025737444275137022
SQHPRAKIY	9	Unmodified	_SQHPRAKIY_					0	0	0			REV__ENSG00000236287|ENST00000413761|ZBED5	REV__ENSG00000236287|ENST00000413761|ZBED5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.7828979492188	2	550.30399	1098.59343	-1.1573	-0.00063684	3.0546	0.0016809	1.8973	0.0010441	550.3058329504727	42.939	1.2023	39.932	39.334	40.536	-3.0074					32	22	2	0	0	0	0.027461	1	2042	2042		40.778	5.1599	1	175990	+		54784	23409	45217	45256	59825	59825					0.048073698030066225
SQHPRGAVLP	10	Unmodified	_SQHPRGAVLP_					0	0	0		ENST00000515035.5_1_5:149755479-149759349:+|nuORF	ENST00000515035.5_1_5:149755479-149759349:+|nuORF	ENST00000515035.5_1_5:149755479-149759349:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.616455078125	2	531.296165	1060.57778	-0.083502	-4.4364E-05	-2.028	-0.0010775	-2.1115	-0.0011218	531.2950398346705	84.348	1.7608	81.686	81.314	83.075	-2.6629					50	34	2	0	0	0	0.02661	1	7185	7185		49.442	23.867	1	187680			54785	13037	45218	45257	59826	59826					0.04991083285949571
SQHPRGAVLP	10	Unmodified	_SQHPRGAVLP_					0	0	0		ENST00000515035.5_1_5:149755479-149759349:+|nuORF	ENST00000515035.5_1_5:149755479-149759349:+|nuORF	ENST00000515035.5_1_5:149755479-149759349:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	531.296165	1060.57778	-1.138	-0.00060459	-1.2487	-0.00066341	-2.3866	-0.001268	531.2954533223101	83.415	1.5766	81.816	81.321	82.897	-1.5989	0.16807	0.00026406	NaN	49.442	51	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103530			54786	13037	45218	45257							0.04991083285949571
SQHPRGAVLP	10	Unmodified	_SQHPRGAVLP_					0	0	0		ENST00000515035.5_1_5:149755479-149759349:+|nuORF	ENST00000515035.5_1_5:149755479-149759349:+|nuORF	ENST00000515035.5_1_5:149755479-149759349:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	531.296165	1060.57778	-0.84748	-0.00045026	-1.3272	-0.00070514	-2.1747	-0.0011554	531.2954484927182	83.703	0.95061	81.442	81.211	82.162	-2.261	-0.20575	0.0001806	NaN	49.442	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	253690			54787	13037	45218	45257							0.04991083285949571
SQHQARIEI	9	Unmodified	_SQHQARIEI_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MSMS	OvCa99_classI_Rep5	1	541.2911987304688	2	541.291079	1080.56761	-0.19524	-0.00010568	-0.36184	-0.00019586	-0.55708	-0.00030154	541.2909838355064	47.315	0.73731	47.315	47.03	47.768	0					49	16	5	0	0	0	0.11322	2	3412	3384;3412		93.598	22.302	1	6179700			54788	1134	45219	45258	59827;59828	59828					0.030544755607024854
SQHQILNASR	10	Unmodified	_SQHQILNASR_					0	0	0			REV__ENSG00000197782|ENST00000683561|ZNF780A	REV__ENSG00000197782|ENST00000683561|ZNF780A	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.8334350585938	2	577.307261	1152.59997	0.1089	6.2869E-05	-0.25996	-0.00015008	-0.15106	-8.7209E-05	577.3055870772338	114.28	0.87051	114.28	114.06	114.93	0					33	18	4	0	0	0	0.027028	1	13090	13090		18.262	0	1	99420	+		54789	22950	45220	45259	59829	59829					0.029772629636909187
SQIAKIFSSL	10	Unmodified	_SQIAKIFSSL_					0	0	0		ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.262451171875	2	547.316232	1092.61791	1.5749	0.00086197	0.71716	0.00039251	2.2921	0.0012545	547.3176363443835	98.143	0.2948	98.143	97.995	98.29	0					9	6	2	0	0	0	0.026849	1	10810	10810		19.104	0	1	154990			54790	7484	45221	45260	59830	59830					0.0753058516584133
SQIFQRKP	8	Unmodified	_SQIFQRKP_					0	0	0		chr1:163322066-163326032|413|15.3|0.63|4.6|+|ENST00000497990|NUF2,NUF2	chr1:163322066-163326032|413|15.3|0.63|4.6|+|ENST00000497990|NUF2,NUF2	chr1:163322066-163326032|413|15.3|0.63|4.6|+|ENST00000497990|NUF2,NUF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.5682373046875	2	502.287808	1002.56106	-0.12597	-6.3273E-05	0.56407	0.00028333	0.4381	0.00022005	502.28765885921246	56.782	0.74862	56.782	56.3	57.048	0					24	17	2	0	0	0	0.028476	1	4682	4682		47.657	22.207	1	172350			54791	246	45222	45261	59831	59831					0.05988582399993447
SQIHFQQSH	9	Unmodified	_SQIHFQQSH_					0	0	0			REV__ENSG00000110318|ENST00000263468|CEP126	REV__ENSG00000110318|ENST00000263468|CEP126	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.3682861328125	2	556.267604	1110.52066	0.34581	0.00019236	-0.47288	-0.00026305	-0.12707	-7.0684E-05	556.267333359324	63.59	2.4993	63.59	62.294	64.793	0					76	61	2	0	0	0	0.027462	1	5635	5635		27.882	0	1	1305500	+		54792	17978	45223	45262	59832	59832					-0.030183839904339038
SQIKYAAKV	9	Unmodified	_SQIKYAAKV_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1;ENST00000522311.1_1_8:103848756-103855898:-|nuORF	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	OvCa99_classI_Rep5	1	504.2975769042969	2	504.297842	1006.58113	0.47918	0.00024165	-0.54029	-0.00027247	-0.061113	-3.0819E-05	504.29739159468045	45.478	0.73088	45.478	45.159	45.89	0					31	16	3	0	0	0	0.18887	1	3151	3151		78.264	9.4176	1	1288200			54793	5769	45224	45263	59833	59833					0.0781033333993264
SQIPLSKI	8	Unmodified	_SQIPLSKI_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5-VWA3B|1|fusion	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MSMS	OvCa99_classI_Rep5	1	443.27459716796875	2	443.273835	884.533118	3.1677	0.0014041	-0.695	-0.00030808	2.4727	0.0010961	443.27337346193417	79.906	1.5977	79.906	79.352	80.949	0					86	38	3	0	0	0	0.078554	3	8148	8148;8174;8208		148.99	5.2523	1	5045500			54794	1607	45225	45264	59834;59835;59836	59834					0.08623259419891838
SQIPLSKI	8	Unmodified	_SQIPLSKI_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5-VWA3B|1|fusion	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	443.273835	884.533118	2.0342	0.00090171	-2.0393	-0.00090395	-0.0050525	-2.2396E-06	443.2727523532932	81.564	1.1232	79.915	79.315	80.438	-1.6485	0.1213	-0.0017127	NaN	148.99	29	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36743			54795	1607	45225	45264							0.08623259419891838
SQIPLSKI	8	Unmodified	_SQIPLSKI_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5-VWA3B|1|fusion	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	443.273835	884.533118	-0.4864	-0.00021561	0.64492	0.00028588	0.15852	7.0269E-05	443.2740051740564	81.942	0.94669	79.646	79.385	80.332	-2.2963	-0.1482	0.00066695	NaN	148.99	33	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80754			54796	1607	45225	45264							0.08623259419891838
SQIPLSKI	8	Unmodified	_SQIPLSKI_					0	0	0		ENSG00000079246|ENST00000392132|XRCC5;XRCC5-VWA3B|1|fusion	ENSG00000079246|ENST00000392132|XRCC5	ENSG00000079246|ENST00000392132|XRCC5	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	443.273835	884.533118	-0.67581	-0.00029957	1.0398	0.00046089	0.36394	0.00016133	443.27413974566787	82.392	1.0712	79.709	79.346	80.417	-2.6829	-0.084939	0.001017	NaN	148.99	33	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87415			54797	1607	45225	45264							0.08623259419891838
SQITRLWPVL	10	Unmodified	_SQITRLWPVL_					0	0	0		ENST00000431090.1_1_22:19435446-19435635:+|nuORF	ENST00000431090.1_1_22:19435446-19435635:+|nuORF	ENST00000431090.1_1_22:19435446-19435635:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	606.833984375	2	606.858598	1211.70264	-1.0171	-0.00061722	-0.070625	-4.2859E-05	-1.0877	-0.00066008	607.3599336233452	88.662	0.35338	86.06	85.933	86.286	-2.6027					9	6	2	0	0	0	0.026685	1	7590	7590		30.318	0	1	14176			54798	11797	45226	45265	59837	59837					0.10525955702451029
SQKDIEQSI	9	Unmodified	_SQKDIEQSI_					0	0	0		nc|ENSG00000196975|P09525-2|ANXA4;nc|ENSG00000196975|P09525|ANXA4;ENSG00000196975|ENST00000394295|ANXA4;ENST00000477632.5_1_2:70037634-70052644:+|nuORF;ENST00000471395.1_1_2:70045687-70052644:+|nuORF	nc|ENSG00000196975|P09525-2|ANXA4	nc|ENSG00000196975|P09525-2|ANXA4	MULTI-MSMS	OvCa99_classI_Rep5	1	524.2702026367188	2	524.269478	1046.5244	-0.23405	-0.00012271	-0.75608	-0.00039639	-0.99014	-0.0005191	524.2691059917045	57.287	1.3612	57.287	56.833	58.194	0					79	31	4	0	0	0	0.0038704	2	4792	4792;4816		229.33	67.075	1	19622000			54799	8667	45227	45266	59838;59839	59838					0.0030024099276033667
SQKHLILLI	9	Unmodified	_SQKHLILLI_					0	0	0		UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.Q2012Sfs*13|1|0.03|ENSG00000127481|chr1:19156309-19156310|-/A|frameshift_variant;UBR4|p.M2075Wfs*25|1|0.07|ENSG00000127481|chr1:19155519-19155519|A/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-5|UBR4	UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	532.8463745117188	2	532.844959	1063.67537	2.587	0.0013785	-0.38884	-0.00020719	2.1982	0.0011713	532.8446228406709	94.46	0.81274	94.46	94.136	94.949	0					46	18	4	0	0	0	0.14998	1	10276	10276		84.916	5.4645	1	2255200			54800	3833	45228	45267	59840	59840					0.14607472162083468
SQKKQREWLWH	11	Unmodified	_SQKKQREWLWH_					0	0	0			REV__ENST00000393389.7_1_11:82924119-82924311:+|nuORF	REV__ENST00000393389.7_1_11:82924119-82924311:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.31768798828125	3	509.27227	1524.79498	-0.37511	-0.00019103	2.3289	0.001186	1.9538	0.00099501	509.27383959032255	56.185	1.6215	52.891	52.567	54.188	-3.2944					46	31	3	0	0	0	0.026302	1	3545	3545		17.167	7.9549	1	91535	+		54801	25281	45229	45268	59841	59841					0.05357433768699593
SQKLWEFDT	9	Unmodified	_SQKLWEFDT_					0	0	0			REV__nc|ENSG00000124721|Q96JB1-2|DNAH8	REV__nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.8528442382812	2	577.279846	1152.54514	-0.98027	-0.00056589	0.38391	0.00022162	-0.59635	-0.00034426	577.280112939992	69.707	0.49448	69.707	69.552	70.046	0					22	11	3	0	0	0	0.027353	1	6635	6635		52.937	0	1	581450	+		54802	18702	45230	45269	59842	59842					-0.025031686275724496
SQLASQFAL	9	Unmodified	_SQLASQFAL_					0	0	0		tr|A0A553SPD9|A0A553SPD9_NIACIPyruvatedehydrogenaseE1componentsubunitalphaOS=NialliacirculansOX=1397GN=pdhAPE=4SV=1	tr|A0A553SPD9|A0A553SPD9_NIACIPyruvatedehydrogenaseE1componentsubunitalphaOS=NialliacirculansOX=1397GN=pdhAPE=4SV=1	tr|A0A553SPD9|A0A553SPD9_NIACIPyruvatedehydrogenaseE1componentsubunitalphaOS=NialliacirculansOX=1397GN=pdhAPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	482.7605895996094	2	482.758549	963.502546	2.1392	0.0010327	1.1547	0.00055742	3.2938	0.0015901	482.7588804234167	57.803	3.1186	54.676	53.456	56.575	-3.1264					158	85	3	0	0	0	0.1944	3	1748	1703;1705;1748		77.318	5.3863	1	89902			54803	34032	45231	45270	59843;59844;59845	59845					0.01933481034848228
SQLEEEFDSDS	11	Unmodified	_SQLEEEFDSDS_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1;NFE2L1|p.L707Tfs*5|1|0.59|ENSG00000082641|chr17:48059439-48059440|-/GA|frameshift_variant	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-SECPEP	OvCa99_classI_Rep5	1	643.2990112304688	2	643.256962	1284.49937	2.8417	0.001828	3.6259	0.0023324	6.4677	0.0041604	643.2583445686594	100.71	0.3689	100.71	100.53	100.9	0					15	8	3	0	0	0	0.02596	1	11188	11188		13.454	0	1	906010			54804	1683	45232	45271	59846	59846					-0.13149903391126827
SQLERGDEP	9	Unmodified	_SQLERGDEP_					0	0	0		ENSG00000196378|ENST00000429371|ZNF34;nc|ENSG00000196378|Q8IZ26|ZNF34	ENSG00000196378|ENST00000429371|ZNF34	ENSG00000196378|ENST00000429371|ZNF34	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2811279296875	2	515.743628	1029.4727	0.18735	9.6622E-05	1.146	0.00059103	1.3333	0.00068765	515.7437237998516	72.648	0.50842	72.648	72.333	72.842	0					16	12	2	0	0	0	0.027462	1	7081	7081		41.427	0.85399	1	303640			54805	8600	45233	45272	59847	59847					-0.0408550270115029
SQLKEAVLV	9	Unmodified	_SQLKEAVLV_					0	0	0		ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.7789611816406	2	493.797675	985.580796	1.8136	0.00089555	-0.6815	-0.00033652	1.1321	0.00055903	493.79709278405795	78.113	0.5724	78.113	77.884	78.457	0					25	13	3	0	0	0	0.027462	1	7907	7907		37.508	3.5865	1	1124900			54806	2153	45234	45273	59848	59848					0.08742913620096715
SQLKLWNV	8	Unmodified	_SQLKLWNV_					0	0	0		nc|ENSG00000143207|Q8NHY2-3|COP1;nc|ENSG00000143207|Q8NHY2-2|COP1;nc|ENSG00000143207|Q8NHY2-4|COP1;ENSG00000143207|ENST00000367669|COP1	nc|ENSG00000143207|Q8NHY2-3|COP1	nc|ENSG00000143207|Q8NHY2-3|COP1	MULTI-MSMS	OvCa99_classI_Rep5	1	494.2856750488281	2	494.284734	986.554916	0.97945	0.00048413	0.97008	0.00047949	1.9495	0.00096362	494.285040185744	101.38	0.54327	101.38	101.15	101.69	0					31	12	3	0	0	0	0.4531	1	11282	11282		82.241	23.459	1	1488900			54807	5022	45235	45274	59849	59849					0.0611006416845612
SQLLDLFLN	9	Unmodified	_SQLLDLFLN_					0	0	0			REV__ENSG00000106266|ENST00000222990|SNX8	REV__ENSG00000106266|ENST00000222990|SNX8	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.3406372070312	2	531.795132	1061.57571	0.62846	0.00033421	3.2899	0.0017496	3.9184	0.0020838	531.7964276789389	140.87	0.34995	140.87	140.68	141.03	0					12	6	3	0	0	0	0.027462	1	16457	16457		35.152	0	1	41109	+		54808	17786	45236	45275	59850	59850					0.04738609757487211
SQLPPLREI	9	Unmodified	_SQLPPLREI_					0	0	0		nc|ENSG00000082641|Q14494-2|NFE2L1;ENSG00000082641|ENST00000362042|NFE2L1;NFE2L1|p.L707Tfs*5|1|0.59|ENSG00000082641|chr17:48059439-48059440|-/GA|frameshift_variant	nc|ENSG00000082641|Q14494-2|NFE2L1	nc|ENSG00000082641|Q14494-2|NFE2L1	MULTI-MSMS	OvCa99_classI_Rep5	1	526.809814453125	2	526.808574	1051.60259	1.8515	0.0009754	0.099862	5.2608E-05	1.9514	0.001028	526.8084546278243	91.454	0.82266	91.454	91.098	91.92	0					46	19	3	0	0	0	0.24899	1	9845	9845		68.846	8.7279	1	2313900			54809	1683	45237	45276	59851	59851					0.07885718368675043
SQLPVHRE	8	Unmodified	_SQLPVHRE_					0	0	0		ENST00000321248.4_1_10:134261270-134261444:+|nuORF	ENST00000321248.4_1_10:134261270-134261444:+|nuORF	ENST00000321248.4_1_10:134261270-134261444:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	483.26483154296875	2	483.261791	964.509028	-0.33787	-0.00016328	4.1487	0.0020049	3.8108	0.0018416	483.26342832716375	54.028	1.4591	54.028	53.432	54.891	0					68	34	5	0	0	0	0.70469	1	4364	4364		42.396	5.237	1	5227200			54810	10374	45238	45277	59852	59852					0.02535418986235527
SQLQTRQQI	9	Unmodified	_SQLQTRQQI_					0	0	0		nc|ENSG00000168610|P40763-3|STAT3;nc|ENSG00000168610|P40763-2|STAT3;ENSG00000168610|ENST00000264657|STAT3	nc|ENSG00000168610|P40763-3|STAT3	nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	OvCa99_classI_Rep5	1	551.304443359375	2	551.304187	1100.59382	-0.50998	-0.00028116	-0.12983	-7.1578E-05	-0.63981	-0.00035273	551.3041675149548	48.834	0.87702	48.834	48.585	49.462	0					59	19	5	0	0	0	0.018335	2	3604	3604;3628		148.99	38.867	1	7850600			54811	6923	45239	45278	59853;59854	59853					0.04754744732167637
SQLRVAKV	8	Unmodified	_SQLRVAKV_					0	0	0		ENSG00000136942|ENST00000348462|RPL35;ENST00000487431.1_1_9:127620199-127623861:-|nuORF;ENST00000495728.1_1_9:127623696-127624209:-|nuORF;ENST00000450819.1_1_1:237144684-237145005:+|nuORF	ENSG00000136942|ENST00000348462|RPL35	ENSG00000136942|ENST00000348462|RPL35	MULTI-MSMS	OvCa99_classI_Rep5	1	450.78448486328125	2	450.784902	899.55525	-0.14553	-6.5601E-05	-0.99428	-0.00044821	-1.1398	-0.00051381	450.78450405514036	42.518	3.0461	42.518	42.199	45.245	0					153	69	5	0	0	0	0.60899	2	2777	2777;2804		62.107	7.246	1	39385000			54812	4541	45240	45279	59855;59856	59855					0.10145483888322815
SQLSLGLQNKI	11	Unmodified	_SQLSLGLQNKI_					0	0	0			REV__ENSG00000197937|ENST00000334197|ZNF347	REV__ENSG00000197937|ENST00000334197|ZNF347	MULTI-MSMS	OvCa9_classI_Rep4_	4	400.904541015625	3	400.903072	1199.68739	2.3868	0.00095686	-2.4054	-0.00096433	-0.018628	-7.4681E-06	400.9020627152264	83.731	1.9627	81.068	80.681	82.643	-2.6629					94	40	3	0	0	0	0.21819	1	6975	6975		77.533	5.4377	1	1295400	+		54813	22968	45241	45280	59857	59857					0.0955304411461384
SQLSMKAAL	9	Oxidation (M)	_SQLSM(Oxidation (M))KAAL_		SQLSM(1)KAAL		SQLSM(77)KAAL	0	0	1		CON__P08727;ENSG00000171345|ENST00000361566|KRT19;CON__P19001	CON__P08727	CON__P08727	MULTI-MSMS	OvCa9_classI_Rep3	3	482.75994873046875	2	482.760235	963.505917	2.1391	0.0010327	-2.3365	-0.001128	-0.1974	-9.5296E-05	482.7588804234167	57.803	3.1186	54.676	53.456	56.575	-3.1264					158	85	3	0	0	0	0.1944	3	1758	1743;1758;1794		77.318	15.21	1	89902		+	54814	625	45242	45281	59858;59859;59860	59859		18			0.022704078172182562
SQLTKQRLV	9	Unmodified	_SQLTKQRLV_					0	0	0		ENST00000375290.6_3_9:98215758-98232201:-|nuORF;PTCH1|p.S1176Yfs*8|1|0.05|ENSG00000185920|chr9:95449863-95449864|-/T|frameshift_variant;nc|ENSG00000185920|Q13635-4|PTCH1;nc|ENSG00000185920|Q13635-3|PTCH1;nc|ENSG00000185920|Q13635-2|PTCH1;ENSG00000185920|ENST00000331920|PTCH1;PTCH1|p.A910V|1|0.08|ENSG00000185920|chr9:95459758-95459758|G/A|missense_variant	ENST00000375290.6_3_9:98215758-98232201:-|nuORF	ENST00000375290.6_3_9:98215758-98232201:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	536.8285522460938	2	536.827298	1071.64004	2.6165	0.0014046	1.1587	0.00062204	3.7753	0.0020267	536.8277272009648	124.55	1.6701	123.5	122.96	124.63	-1.0519					82	30	4	0	0	0	0.50149	1	9686	9686		42.396	3.1433	1	328410			54815	8300	45243	45282	59861	59861					0.10708809634274985
SQLVNPAFP	9	Unmodified	_SQLVNPAFP_					0	0	0		ZP2|p.I441Mfs*15|1|0.17|ENSG00000103310|chr16:21201988-21201989|-/C|frameshift_variant;nc|ENSG00000103310|Q05996-2|ZP2;ENSG00000103310|ENST00000574091|ZP2	ZP2|p.I441Mfs*15|1|0.17|ENSG00000103310|chr16:21201988-21201989|-/C|frameshift_variant	ZP2|p.I441Mfs*15|1|0.17|ENSG00000103310|chr16:21201988-21201989|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.763671875	2	486.761092	971.507631	0.05502	2.6782E-05	-1.2893	-0.00062756	-1.2342	-0.00060078	486.7605481568884	62.008	3.0077	58.55	57.166	60.174	-3.4577					165	61	5	0	0	0	0.56189	1	4360	4360		36.447	0.82846	1	868610			54816	2305	45244	45283	59862	59862					0.02073784897470432
SQMTQMLDI	9	Unmodified	_SQMTQMLDI_					0	0	0		ENST00000485113.5_1_1:146742566-146742704:+|nuORF;nc|ENSG00000131778|Q86WJ1-5|CHD1L;nc|ENSG00000131778|Q86WJ1-3|CHD1L;nc|ENSG00000131778|Q86WJ1-4|CHD1L;ENSG00000131778|ENST00000369258|CHD1L	ENST00000485113.5_1_1:146742566-146742704:+|nuORF	ENST00000485113.5_1_1:146742566-146742704:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	533.749755859375	2	533.74901	1065.48347	1.5825	0.00084465	0.67332	0.00035938	2.2558	0.001204	533.7491702478208	122.93	0.83616	122.93	122.58	123.42	0					61	17	6	0	0	0	0.40818	1	14186	14186		51.193	1.6567	1	997560			54817	4089	45245	45284	59863	59863					-0.046655596427171986
SQNAIDHKI	9	Unmodified	_SQNAIDHKI_					0	0	0		ENSG00000156802|ENST00000287394|ATAD2	ENSG00000156802|ENST00000287394|ATAD2	ENSG00000156802|ENST00000287394|ATAD2	MULTI-MSMS	OvCa99_classI_Rep5	1	513.272216796875	2	513.272355	1024.53016	-0.61516	-0.00031575	0.15585	7.9996E-05	-0.45931	-0.00023575	513.2722905789069	38.137	0.7207	38.137	37.94	38.661	0					35	15	4	0	0	0	0.056671	1	2140	2140		114.89	37.577	1	1377200			54818	5857	45246	45285	59864	59864					0.018873842950824837
SQNKSYLAV	9	Unmodified	_SQNKSYLAV_					0	0	0		ENSG00000225921|ENST00000451315|NOL7	ENSG00000225921|ENST00000451315|NOL7	ENSG00000225921|ENST00000451315|NOL7	MULTI-MSMS	OvCa99_classI_Rep5	1	505.2703552246094	2	505.269281	1008.52401	0.13342	6.7412E-05	-0.33999	-0.00017179	-0.20657	-0.00010437	505.26895424048547	62.687	0.6815	62.687	62.418	63.1	0					55	16	5	0	0	0	0.18887	1	5588	5588		78.264	22.76	1	4043500			54819	9267	45247	45286	59865	59865					0.02008866063579262
SQNQKRLYI	9	Unmodified	_SQNQKRLYI_					0	0	0		ENSG00000121579|ENST00000240922|NAA50	ENSG00000121579|ENST00000240922|NAA50	ENSG00000121579|ENST00000240922|NAA50	MULTI-MSMS	OvCa99_classI_Rep5	1	575.3226318359375	2	575.32238	1148.63021	-0.40202	-0.00023129	0.22353	0.0001286	-0.1785	-0.00010269	575.3224188181373	47.272	0.78565	47.272	46.938	47.724	0					43	17	3	0	0	0	0.10363	1	3379	3379		96.19	11.03	1	3741800			54820	3489	45248	45287	59866	59866					0.06183621628929359
SQNSIVSRI	9	Unmodified	_SQNSIVSRI_					0	0	0		ENSG00000109686|ENST00000604030|SH3D19;nc|ENSG00000109686|Q5HYK7-3|SH3D19;nc|ENSG00000109686|Q5HYK7-2|SH3D19;nc|ENSG00000109686|Q5HYK7|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	MULTI-MSMS	OvCa99_classI_Rep5	1	502.2825012207031	2	502.28018	1002.54581	-0.47292	-0.00023754	1.7042	0.00085599	1.2313	0.00061845	502.28000968324375	68.429	1.3554	68.429	68.077	69.433	0					62	32	4	0	0	0	0.052089	3	6450	6450;6468;6473		117.53	37.071	1	3003200			54821	2727	45249	45288	59867;59868;59869	59867					0.044636708121629454
SQNSPLGPL	9	Unmodified	_SQNSPLGPL_					0	0	0		ENSG00000158553|ENST00000444565|POM121L2	ENSG00000158553|ENST00000444565|POM121L2	ENSG00000158553|ENST00000444565|POM121L2	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.7441101074219	2	456.742899	911.471246	-0.14918	-6.8138E-05	0.1443	6.5907E-05	-0.0048857	-2.2315E-06	456.7428091959259	74.432	2.3975	71.201	70.676	73.074	-3.2308					111	49	4	0	0	0	0.12365	1	5821	5821		90.777	0	1	857600			54822	5960	45250	45289	59870	59870					0.01196908000770236
SQPFRPPNDN	10	Unmodified	_SQPFRPPNDN_					0	0	0			REV__ENSG00000113361|ENST00000265071|CDH6	REV__ENSG00000113361|ENST00000265071|CDH6	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.371826171875	2	586.278169	1170.54179	1.627	0.00095388	-0.14075	-8.2516E-05	1.4863	0.00087136	586.2781536804574	126.09	0.56342	126.09	125.85	126.42	0					19	11	2	0	0	0	0.026624	1	14593	14593		46.457	28.195	1	235240	+		54823	18147	45251	45290	59871	59871					-0.0366641868156421
SQPRIMQVI	9	Unmodified	_SQPRIMQVI_					0	0	0		nc|ENSG00000117600|Q7Z2D5-3|PLPPR4;ENSG00000117600|ENST00000370185|PLPPR4;nc|ENSG00000117600|Q7Z2D5|PLPPR4	nc|ENSG00000117600|Q7Z2D5-3|PLPPR4	nc|ENSG00000117600|Q7Z2D5-3|PLPPR4	MULTI-MSMS	OvCa99_classI_Rep5	1	536.3033447265625	2	536.302601	1070.59065	1.6215	0.00086962	0.33552	0.00017994	1.957	0.0010496	536.3026825657175	92.296	2.2569	92.296	91.879	94.136	0					133	53	5	0	0	0	0.22621	1	9953	9953		71.877	4.3838	1	18460000			54824	3266	45252	45291	59872	59872					0.05817778353844005
SQPSFFALLF	10	Unmodified	_SQPSFFALLF_					0	0	0			REV__ENST00000422847.1_1_10:81978568-81978796:+|nuORF	REV__ENST00000422847.1_1_10:81978568-81978796:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	578.8547973632812	2	578.8055	1155.59645	-0.79352	-0.0004593	-0.75098	-0.00043467	-1.5445	-0.00089397	578.8066367933757	73.774	0.68312	71.374	70.792	71.475	-2.3999					14	12	2	0	0	0	0.026734	1	6009	6009		39.253	5.0803	1	14436	+		54825	25625	45253	45292	59873	59873					0.02487200137147738
SQPSFFALLF	10	Unmodified	_SQPSFFALLF_					0	0	0			REV__ENST00000422847.1_1_10:81978568-81978796:+|nuORF	REV__ENST00000422847.1_1_10:81978568-81978796:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	578.8055	1155.59645	-0.90821	-0.00052568	-5.7478	-0.0033269	-6.6561	-0.0038526	578.8005930592244	74.502	0.19322	71.271	71.144	71.337	-3.2308	-0.05154	-0.0021529	NaN	31.53	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10101	+		54826	25625	45253	45292							0.02487200137147738
SQPSKTLFV	9	Unmodified	_SQPSKTLFV_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	OvCa99_classI_Rep5	1	503.78387451171875	2	503.782025	1005.5495	1.0132	0.00051045	0.30307	0.00015268	1.3163	0.00066313	503.78203490160917	74.561	1.1584	74.561	74.249	75.407	0					77	28	4	0	0	0	0.22621	1	7390	7390		71.877	10.906	1	9367300			54827	3058	45254	45293	59874	59874					0.04694340586001999
SQQCACARAR	10	Unmodified	_SQQCACARAR_					0	0	0		ENST00000315691.7_1_3:143690684-143690885:+|nuORF	ENST00000315691.7_1_3:143690684-143690885:+|nuORF	ENST00000315691.7_1_3:143690684-143690885:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.3093872070312	2	547.253117	1092.49168	0.81045	0.00044352	0.26377	0.00014435	1.0742	0.00058787	547.7547173317771	132.48	0.80641	132.48	132.18	132.99	0					64	16	6	0	0	0	0.026577	1	15410	15410		58.23	8.7884	1	349510			54828	10335	45255	45294	59875	59875					-0.0508656788274493
SQQELGSSL	9	Unmodified	_SQQELGSSL_					0	0	0			REV__ENST00000262319.10_1_16:1559986-1560022:+|nuORF	REV__ENST00000262319.10_1_16:1559986-1560022:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	474.7346496582031	2	474.735271	947.45599	-2.3251	-0.0011038	2.4067	0.0011426	0.081657	3.8766E-05	474.7362193414924	37.325	1.0333	34.615	34.386	35.419	-2.7097					44	20	3	0	0	0	0.19758	1	1662	1662		76.774	2.5191	1	91637	+		54829	23973	45256	45295	59876	59876					-0.019840035870743122
SQQLVPGRLKN	11	Unmodified	_SQQLVPGRLKN_					0	0	0		PDE4DIP|p.R419Vfs*21|1|0.19|ENSG00000178104|chr1:148965542-148965542|T/-|frameshift_variant	PDE4DIP|p.R419Vfs*21|1|0.19|ENSG00000178104|chr1:148965542-148965542|T/-|frameshift_variant	PDE4DIP|p.R419Vfs*21|1|0.19|ENSG00000178104|chr1:148965542-148965542|T/-|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	620.3681030273438	2	620.362036	1238.70952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	155.65	1	155.65	155.15	156.15	0								0	0	0	0.19406	1	18239	18239		33.922	1.1092	1				54830	15485	45257	45296	59877	59877					0.09971268583035453
SQQSDGDRDLQ	11	Unmodified	_SQQSDGDRDLQ_					0	0	0		ENSG00000116903|ENST00000366645|EXOC8;EXOC8|p.G422Efs*18|1|0.24|ENSG00000116903|chr1:231336481-231336482|-/TCAAAGTTACTTACCCCACAACTTTTCATCT|frameshift_variant	ENSG00000116903|ENST00000366645|EXOC8	ENSG00000116903|ENST00000366645|EXOC8	MULTI-MSMS	OvCa9_classI_Rep4_	4	416.8541259765625	3	416.853217	1247.53782	1.2058	0.00050262	0.038021	1.5849E-05	1.2438	0.00051847	416.85310393429546	67.771	1.618	64.281	63.938	65.556	-3.4902					81	32	3	0	0	0	0.63561	1	4990	4990		30.139	0	1	477000			54831	3218	45258	45297	59878	59878					-0.07604552965949551
SQRGKRKQAP	10	Unmodified	_SQRGKRKQAP_					0	0	0			REV__ENSG00000121297|ENST00000240587|TSHZ3	REV__ENSG00000121297|ENST00000240587|TSHZ3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	578.8572387695312	2	578.338895	1154.66324	-0.98088	-0.00056728	-1.5859	-0.0009172	-2.5668	-0.0014845	578.838148285751	74.268	1.0515	71.037	70.816	71.867	-3.2308					35	21	3	0	0	0	0.027028	1	5872	5872		12.812	0	1	52913	+		54832	18537	45259	45298	59879	59879					0.09209248471597675
SQRLSRGSEE	10	Unmodified	_SQRLSRGSEE_					0	0	0		nc|ENSG00000163681|Q14BN4-3|SLMAP;nc|ENSG00000163681|Q14BN4|SLMAP;ENSG00000163681|ENST00000671191|SLMAP;nc|ENSG00000163681|Q14BN4-2|SLMAP;nc|ENSG00000163681|Q14BN4-7|SLMAP;ENST00000467901.1_1_3:57743378-57875870:+|nuORF;nc|ENSG00000163681|Q14BN4-6|SLMAP	nc|ENSG00000163681|Q14BN4-3|SLMAP	nc|ENSG00000163681|Q14BN4-3|SLMAP	MULTI-MSMS	OvCa9_classI_Rep4_	4	574.7871704101562	2	574.786358	1147.55816	-1.3785	-0.00079234	0.87776	0.00050452	-0.50073	-0.00028782	574.786764539179	42.172	1.3413	39.191	38.959	40.3	-2.9804					66	25	4	0	0	0	0.62299	1	1948	1948		39.253	0	1	417380			54833	6345	45260	45299	59880	59880					-0.009713375154660753
SQRPFLRR	8	Unmodified	_SQRPFLRR_					0	0	0		ENST00000490468.5_1_21:47744088-47766690:+|nuORF	ENST00000490468.5_1_21:47744088-47766690:+|nuORF	ENST00000490468.5_1_21:47744088-47766690:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.275634765625	2	530.312149	1058.60975	-0.25388	-0.00013464	0.62401	0.00033092	0.37012	0.00019628	530.312384881962	43.272	0.29272	43.272	43.1	43.393	0					8	6	2	0	0	0	0.028476	1	2825	2825		17.365	0	1	46548			54834	12695	45261	45300	59881	59881					0.0827849575973687
SQRQHDLDVL	10	Unmodified	_SQRQHDLDVL_					0	0	0			REV__CHD2-MYH9|1|fusion	REV__CHD2-MYH9|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	606.3134155273438	2	605.812376	1209.6102	1.8194	0.0011022	2.6761	0.0016212	4.4955	0.0027234	605.8139683005775	130.02	0.38046	130.02	129.82	130.2	0					13	7	2	0	0	0	0.69073	1	15059	15059		31.53	1.2121	1	85288	+		54835	15788	45262	45301	59882	59882					0.013778258982483749
SQRWKMLILKR	11	Unmodified	_SQRWKMLILKR_					0	0	0		ENST00000480058.5_1_6:4021564-4031824:+|nuORF	ENST00000480058.5_1_6:4021564-4031824:+|nuORF	ENST00000480058.5_1_6:4021564-4031824:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	486.9592590332031	3	486.962379	1457.86531	-7.2825	-0.0035463	0.20684	0.00010072	-7.0756	-0.0034456	486.9623381995862	161.08	3.4384	159.71	158.52	161.96	-1.3692					219	70	4	0	0	0	0.72545	1	13945	13945		9.6461	0.43434	1	133400			54836	12516	45263	45302	59883	59883					0.15469015832809418
SQSKKRLHI	9	Unmodified	_SQSKKRLHI_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	OvCa99_classI_Rep5	1	548.8325805664062	2	548.832914	1095.65128	-1.1308	-0.00062064	0.64803	0.00035566	-0.48282	-0.00026498	548.833303772913	27.816	0.79838	27.816	27.591	28.39	0					50	15	5	0	0	0	0.56889	1	875	875		35.618	2.8059	1	2769400			54837	6511	45264	45303	59884	59884					0.10727631728400411
SQSLSIQWVY	10	Unmodified	_SQSLSIQWVY_					0	0	0		ENSG00000110063|ENST00000263579|DCPS	ENSG00000110063|ENST00000263579|DCPS	ENSG00000110063|ENST00000263579|DCPS	MULTI-SECPEP	OvCa99_classI_Rep5	1	403.2315979003906	3	404.208273	1209.60299	0.40879	0.00016524	3.2851	0.0013279	3.6939	0.0014931	404.2094815584451	34.804	0.70525	34.804	34.679	35.384	0					16	14	2	0	0	0	0.027115	1	1759	1759		24.232	1.6702	1	144210			54838	2751	45265	45304	59885	59885					0.006570932978547717
SQSNMTQKV	9	Unmodified	_SQSNMTQKV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	OvCa99_classI_Rep5	1	511.7504577636719	2	511.750398	1021.48624	-0.72896	-0.00037304	0.38405	0.00019654	-0.34491	-0.00017651	511.75047461972173	36.374	0.54333	36.374	36.119	36.662	0					27	11	3	0	0	0	0.056671	1	1908	1908		114.89	35.182	1	1045900			54839	3691	45266	45305	59886	59886					-0.02363968193560595
SQSRHSAQI	9	Unmodified	_SQSRHSAQI_					0	0	0		ENST00000471704.1_1_2:62132813-62228123:+|nuORF;nc|ENSG00000173163|Q8N668-2|COMMD1;ENSG00000173163|ENST00000311832|COMMD1	ENST00000471704.1_1_2:62132813-62228123:+|nuORF	ENST00000471704.1_1_2:62132813-62228123:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	507.2596435546875	2	507.259779	1012.50501	-0.92857	-0.00047103	0.42745	0.00021683	-0.50112	-0.0002542	507.2599018466108	27.216	0.69791	27.216	27.043	27.741	0					33	13	4	0	0	0	0.45842	1	784	784		46.457	0.50483	1	617230			54840	7354	45267	45306	59887	59887					-0.0007467050747891335
SQSSLIHLV	9	Unmodified	_SQSSLIHLV_					0	0	0		nc|ENSG00000097021|O00154-2|ACOT7;nc|ENSG00000097021|O00154-3|ACOT7;nc|ENSG00000097021|O00154-6|ACOT7;nc|ENSG00000097021|O00154-4|ACOT7;nc|ENSG00000097021|O00154-5|ACOT7;ENSG00000097021|ENST00000361521|ACOT7;nc|ENSG00000097021|O00154|ACOT7	nc|ENSG00000097021|O00154-2|ACOT7	nc|ENSG00000097021|O00154-2|ACOT7	MULTI-MSMS	OvCa99_classI_Rep5	1	492.28143310546875	2	492.279649	982.544745	2.4367	0.0011995	0.87745	0.00043195	3.3141	0.0016315	492.2799065734797	94.148	0.89049	94.148	93.799	94.69	0					37	20	3	0	0	0	0.11471	1	10231	10231		93.195	16.421	1	1484100			54841	1954	45268	45307	59888	59888					0.05277456443252504
SQSSLIHLV	9	Unmodified	_SQSSLIHLV_					0	0	0		nc|ENSG00000097021|O00154-2|ACOT7;nc|ENSG00000097021|O00154-3|ACOT7;nc|ENSG00000097021|O00154-6|ACOT7;nc|ENSG00000097021|O00154-4|ACOT7;nc|ENSG00000097021|O00154-5|ACOT7;ENSG00000097021|ENST00000361521|ACOT7;nc|ENSG00000097021|O00154|ACOT7	nc|ENSG00000097021|O00154-2|ACOT7	nc|ENSG00000097021|O00154-2|ACOT7	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	492.279649	982.544745	0.18468	9.0913E-05	0.29217	0.00014383	0.47685	0.00023474	492.2799967440627	96.285	0.91589	93.859	93.304	94.22	-2.4256	-0.14445	-0.00041264	NaN	93.195	21	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20989			54842	1954	45268	45307							0.05277456443252504
SQSTVKVLI	9	Unmodified	_SQSTVKVLI_					0	0	0		ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	ENSG00000143621|ENST00000361891|ILF2	MULTI-MSMS	OvCa99_classI_Rep5	1	487.7994384765625	2	487.797675	973.580796	1.3936	0.00067978	0.51316	0.00025032	1.9067	0.0009301	487.79789916750184	79.369	2.2945	79.369	79.119	81.413	0					120	55	5	0	0	0	0.036986	3	8105	8076;8105;8136		129.42	28.169	1	74707000			54843	5077	45269	45308	59889;59890;59891	59890					0.09294913620101397
SQTFVNPHV	9	Unmodified	_SQTFVNPHV_					0	0	0		ENST00000602029.1_1_19:50519188-50519419:-|nuORF;ENST00000599138.5_1_19:50512054-50519419:-|nuORF;ENST00000424804.6_1_19:50496160-50519419:-|nuORF;nc|ENSG00000105053|Q8IV63-2|VRK3;nc|ENSG00000105053|Q8IV63-3|VRK3;ENSG00000105053|ENST00000316763|VRK3	ENST00000602029.1_1_19:50519188-50519419:-|nuORF	ENST00000602029.1_1_19:50519188-50519419:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	514.76318359375	2	514.761623	1027.50869	-0.99855	-0.00051402	0.73029	0.00037593	-0.26826	-0.00013809	514.7618842266772	70.264	0.64045	70.264	69.962	70.603	0					35	15	3	0	0	0	0.035142	1	6731	6731		131.03	51.319	1	4179600			54844	2418	45270	45309	59892	59892					-0.003960007336445415
SQTGFVVLV	9	Unmodified	_SQTGFVVLV_					0	0	0		ENSG00000133048|ENST00000255409|CHI3L1	ENSG00000133048|ENST00000255409|CHI3L1	ENSG00000133048|ENST00000255409|CHI3L1	MULTI-MSMS	OvCa99_classI_Rep5	1	475.27276611328125	2	475.271293	948.528032	1.1998	0.00057023	0.72964	0.00034678	1.9294	0.00091701	475.27149295966217	131.42	0.51794	131.42	131.2	131.72	0					29	10	4	0	0	0	0.13482	1	15280	15280		87.754	7.8151	1	288350			54845	4192	45271	45310	59893	59893					0.05170955557287016
SQTIQPKV	8	Unmodified	_SQTIQPKV_					0	0	0		ENSG00000065883|ENST00000181839|CDK13;nc|ENSG00000065883|Q14004-2|CDK13;ENST00000465643.1_1_7:40132349-40134576:+|nuORF	ENSG00000065883|ENST00000181839|CDK13	ENSG00000065883|ENST00000181839|CDK13	MULTI-MSMS	OvCa99_classI_Rep5	1	450.7626647949219	2	450.761092	899.507631	0.28486	0.0001284	-0.40399	-0.0001821	-0.11912	-5.3696E-05	450.7608969265189	51.313	0.63062	51.313	51.078	51.708	0					22	14	2	0	0	0	0.17036	1	3946	3946		129.68	38.906	1	1342500			54846	1339	45272	45311	59894	59894					0.053857848974644185
SQTKQKLNI	9	Unmodified	_SQTKQKLNI_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	nc|ENSG00000128641|O43795-2|MYO1B	MULTI-MSMS	OvCa99_classI_Rep5	1	530.3115234375	2	530.31148	1058.60841	-0.48835	-0.00025898	-0.061071	-3.2387E-05	-0.54942	-0.00029136	530.3114865182425	38.554	0.94885	38.554	38.069	39.017	0					61	20	5	0	0	0	0.0094273	3	2188	2188;2212;2226		171.53	44.503	1	11867000			54847	3897	45273	45312	59895;59896;59897	59895					0.08144816880303551
SQTPQPQRV	9	Unmodified	_SQTPQPQRV_					0	0	0		ENSG00000213588|ENST00000395064|ZBTB9	ENSG00000213588|ENST00000395064|ZBTB9	ENSG00000213588|ENST00000395064|ZBTB9	MULTI-MSMS	OvCa99_classI_Rep5	1	520.7779541015625	2	520.777805	1039.54106	-1.2268	-0.00063887	1.1756	0.00061221	-0.051189	-2.6658E-05	520.7783889965226	39.768	1.0155	39.768	39.463	40.479	0					54	22	4	0	0	0	0.27001	1	2390	2390		66.429	7.6473	1	1056100			54848	9136	45274	45313	59898	59898					0.022867866693559336
SQTSHPGAPLS	11	Unmodified	_SQTSHPGAPLS_					0	0	0		ENST00000375120.3_1_1:20238803-20239091:+|nuORF	ENST00000375120.3_1_1:20238803-20239091:+|nuORF	ENST00000375120.3_1_1:20238803-20239091:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.2914428710938	2	541.26727	1080.51999	-0.61363	-0.00033214	-2.8882	-0.0015633	-3.5018	-0.0018954	541.2653178786361	85.917	1.3036	83.697	83.235	84.538	-2.2204					58	25	3	0	0	0	0.025701	1	5120	5120		36.447	0	1	110800			54849	11047	45275	45314	59899	59899					-0.017052234301445424
SQVDVAVKI	9	Unmodified	_SQVDVAVKI_					0	0	0		ENST00000486256.5_1_7:6777360-6777438:+|nuORF;ENSG00000122512|ENST00000265849|PMS2	ENST00000486256.5_1_7:6777360-6777438:+|nuORF	ENST00000486256.5_1_7:6777360-6777438:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	479.7845458984375	2	479.782025	957.549496	1.2687	0.00060871	0.56451	0.00027084	1.8332	0.00087955	479.782172548373	83.26	1.3962	83.26	82.781	84.177	0					70	32	4	0	0	0	0.034473	2	8663	8639;8663		131.62	24.609	1	4120400			54850	3537	45276	45315	59900;59901	59901					0.06902340586009359
SQVEIKLSL	9	Unmodified	_SQVEIKLSL_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	OvCa99_classI_Rep5	1	508.8051452636719	2	508.802957	1015.59136	-0.16507	-8.3986E-05	0.28543	0.00014523	0.12036	6.1241E-05	508.8029623860008	104.89	1.2957	104.89	104.36	105.66	0					80	29	4	0	0	0	0.0079674	2	11776	11755;11776		199.89	47.149	1	3028100			54851	7708	45277	45316	59902;59903	59903					0.08418896274520193
SQVEILQRV	9	Unmodified	_SQVEILQRV_					0	0	0		ENSG00000117318|ENST00000374561|ID3	ENSG00000117318|ENST00000374561|ID3	ENSG00000117318|ENST00000374561|ID3	MULTI-MSMS	OvCa99_classI_Rep5	1	536.3126831054688	2	536.31148	1070.60841	2.1731	0.0011654	-0.21534	-0.00011549	1.9577	0.00105	536.3112883498045	84.971	0.87138	84.971	84.631	85.502	0					53	20	4	0	0	0	0.012992	1	8890	8890		159.28	55.219	1	9324900			54852	3247	45278	45317	59904	59904					0.07592816880332975
SQVKSKLQI	9	Unmodified	_SQVKSKLQI_					0	0	0		NCKAP5L|p.S606Qfs*204|1|0.21|ENSG00000167566|chr12:49796044-49796045|-/G|frameshift_variant;nc|ENSG00000167566|Q9HCH0-2|NCKAP5L;ENSG00000167566|ENST00000335999|NCKAP5L	NCKAP5L|p.S606Qfs*204|1|0.21|ENSG00000167566|chr12:49796044-49796045|-/G|frameshift_variant	NCKAP5L|p.S606Qfs*204|1|0.21|ENSG00000167566|chr12:49796044-49796045|-/G|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	515.8168334960938	2	515.816399	1029.61824	-0.53875	-0.0002779	0.23949	0.00012353	-0.29926	-0.00015437	515.8164096466394	47.703	0.7835	47.703	47.465	48.248	0					45	17	4	0	0	0	0.051592	1	3444	3444		117.81	7.6912	1	4665000			54853	6809	45279	45318	59905	59905					0.10462004885698661
SQVNVAAVPL	10	Unmodified	_SQVNVAAVPL_					0	0	0			REV__ENSG00000118246|ENST00000402774|FASTKD2	REV__ENSG00000118246|ENST00000402774|FASTKD2	MULTI-MSMS	OvCa9_classI_Rep2	2	499.2831726074219	2	499.287474	996.560395	-0.010404	-5.1946E-06	-0.93647	-0.00046757	-0.94688	-0.00047276	499.28693766889194	79.522	1.6653	77.812	76.789	78.454	-1.7103					98	32	4	0	0	0	0.39172	1	6647	6647		69.628	0.8408	1	810360	+		54854	18387	45280	45319	59906	59906					0.061977429602734446
SQVPNKGHE	9	Unmodified	_SQVPNKGHE_					0	0	0		ENST00000403980.1_1_2:42180111-42180432:-|nuORF;nc|ENSG00000205086|Q6ZV80|LINC02898	ENST00000403980.1_1_2:42180111-42180432:-|nuORF	ENST00000403980.1_1_2:42180111-42180432:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	498.2519226074219	2	498.24888	994.483208	-0.3137	-0.0001563	4.1518	0.0020686	3.8381	0.0019123	498.25086319359616	40.943	0.6645	40.943	40.711	41.375	0					31	14	3	0	0	0	0.37135	1	2522	2522		54.776	2.4771	1	521460			54855	11446	45281	45320	59907	59907					-0.014254752560418638
SQVTFPIRV	9	Unmodified	_SQVTFPIRV_					0	0	0		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-MSMS	OvCa99_classI_Rep5	1	523.8031616210938	2	523.803291	1045.59203	-1.234	-0.00064637	2.8597	0.0014979	1.6257	0.00085153	523.803495852255	104.51	0.85162	104.51	104.15	105	0					59	19	5	0	0	0	0.51177	1	11731	11731		41.427	11.109	1	1231600			54856	2585	45282	45321	59908	59908					0.07105735714230832
SQWASRLQP	9	Unmodified	_SQWASRLQP_					0	0	0			REV__ANXA9|p.Q149Rfs*116|1|0.08|ENSG00000143412|chr1:150984649-150984649|C/-|frameshift_variant	REV__ANXA9|p.Q149Rfs*116|1|0.08|ENSG00000143412|chr1:150984649-150984649|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.7972412109375	2	536.780348	1071.54614	2.5948	0.0013928	1.4864	0.00079788	4.0812	0.0021907	536.7810373745991	75.45	0.66411	75.45	75.292	75.956	0					25	16	2	0	0	0	0.027462	1	7576	7576		31.53	12.426	1	1436800	+		54857	15641	45283	45322	59909	59909					0.01323090531991511
SQWDSVLHI	9	Unmodified	_SQWDSVLHI_					0	0	0		ENSG00000196275|ENST00000451013|GTF2IRD2;ENSG00000174428|ENST00000472837|GTF2IRD2B;nc|ENSG00000196275|Q86UP8-6|GTF2IRD2	ENSG00000196275|ENST00000451013|GTF2IRD2	ENSG00000196275|ENST00000451013|GTF2IRD2	MULTI-MSMS	OvCa99_classI_Rep5	1	542.7772827148438	2	542.774731	1083.53491	2.0018	0.0010865	0.76804	0.00041687	2.7699	0.0015034	542.7748826434673	118.2	0.83516	118.2	117.84	118.67	0					44	17	4	0	0	0	0.1804	1	13544	13544		79.713	26.116	1	913660			54858	7462	45284	45323	59910	59910					-0.003517315621365924
SQWSLQHEI	9	Unmodified	_SQWSLQHEI_					0	0	0		nc|ENSG00000085415|Q96EE3|SEH1L;ENSG00000085415|ENST00000399892|SEH1L	nc|ENSG00000085415|Q96EE3|SEH1L	nc|ENSG00000085415|Q96EE3|SEH1L	MULTI-MSMS	OvCa99_classI_Rep5	1	564.2788696289062	2	564.277638	1126.54072	2.4626	0.0013896	0.045349	2.5589E-05	2.508	0.0014152	564.2772091107399	87.076	0.65819	87.076	86.888	87.546	0					32	15	3	0	0	0	0.034473	1	9204	9204		131.62	51.904	1	1809000			54859	1728	45285	45324	59911	59911					-0.017486330504880243
SQYVKKYGI	9	Unmodified	_SQYVKKYGI_					0	0	0		tr|A0A7D6VV26|A0A7D6VV26_9CLOTPLP-dependentaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03735PE=3SV=1	tr|A0A7D6VV26|A0A7D6VV26_9CLOTPLP-dependentaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03735PE=3SV=1	tr|A0A7D6VV26|A0A7D6VV26_9CLOTPLP-dependentaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03735PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.7839965820312	2	543.303124	1084.5917	-0.2351	-0.00012773	3.9289	0.0021346	3.6938	0.0020069	543.3061902888137	30.111	0.35147	30.111	29.885	30.236	0					11	6	3	0	0	0	0.027462	1	1134	1134		35.618	5.1146	1	40326			54860	35210	45286	45325	59912	59912					0.05278315994382865
SQYYPKLRV	9	Unmodified	_SQYYPKLRV_					0	0	0		nc|ENSG00000127483|Q5SSJ5-3|HP1BP3;nc|ENSG00000127483|Q5SSJ5-2|HP1BP3;ENSG00000127483|ENST00000438032|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	nc|ENSG00000127483|Q5SSJ5-3|HP1BP3	MULTI-MSMS	OvCa99_classI_Rep5	1	577.3235473632812	2	577.321848	1152.62914	-0.68101	-0.00039316	1.1256	0.00064984	0.4446	0.00025668	577.322295602184	69.572	0.90289	69.572	69.228	70.13	0					48	21	3	0	0	0	0.21231	1	6614	6614		74.255	14.137	1	2792300			54861	3834	45287	45326	59913	59913					0.058934072599640785
SRAAAGKRPW	10	Unmodified	_SRAAAGKRPW_					0	0	0			REV__ENST00000291906.4_1_9:131482996-131483179:+|nuORF	REV__ENST00000291906.4_1_9:131482996-131483179:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.2805786132812	2	550.309606	1098.60466	-0.59395	-0.00032685	2.8353	0.0015603	2.2414	0.0012335	550.31111198907	121.22	1.0239	119.87	119.54	120.57	-1.3479					44	19	3	0	0	0	0.026849	1	11482	11482		25.574	0	1	51953	+		54862	24159	45288	45327	59914	59914					0.05930191897118675
SRAAALAKEV	10	Unmodified	_SRAAALAKEV_					0	0	0		ENST00000560184.5_1_15:90408823-90437190:-|nuORF;ENST00000560224.1_1_15:90408823-90446582:-|nuORF	ENST00000560184.5_1_15:90408823-90437190:-|nuORF	ENST00000560184.5_1_15:90408823-90437190:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3230895996094	2	508.298373	1014.58219	-0.36824	-0.00018718	4.164	0.0021166	3.7958	0.0019294	508.2997062137601	48.636	0.2196	48.636	48.455	48.675	0					6	4	2	0	0	0	0.026994	1	3560	3560		19.104	3.4617	1	45132			54863	13730	45289	45328	59915	59915					0.07548547708836395
SRAADIGGLW	10	Unmodified	_SRAADIGGLW_					0	0	0		nc|ENSG00000170927|P08F94-2|PKHD1;PKHD1|p.A3983Kfs*44|1|0.16|ENSG00000170927|chr6:51619327-51619360|CAGGTACACCTGCTGAGCAGGAGCACCTGGAGCA/-|frameshift_variant;ENSG00000170927|ENST00000371117|PKHD1;PKHD1|p.P2004Hfs*49|1|0.03|ENSG00000170927|chr6:51934220-51934221|-/T|frameshift_variant;PKHD1|p.I1247Qfs*50|1|0.32|ENSG00000170927|chr6:52026053-52026071|GCAGGGTTTCACACCAGAT/-|frameshift_variant	nc|ENSG00000170927|P08F94-2|PKHD1	nc|ENSG00000170927|P08F94-2|PKHD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.316162109375	2	523.274898	1044.53524	-1.2707	-0.00066495	-1.5193	-0.00079503	-2.7901	-0.00146	523.2727222972068	34.192	0.57335	34.192	33.824	34.398	0					23	11	4	0	0	0	0.026849	1	1585	1585		32.812	7.3622	1	44536			54864	7155	45290	45329	59916	59916					0.014756881577113745
SRAALLQLL	9	Unmodified	_SRAALLQLL_					0	0	0		ENST00000534448.5_1_11:47269480-47270343:-|nuORF;ENST00000529788.2_1_11:47269122-47270343:-|nuORF;nc|ENSG00000134575|P11117-2|ACP2;ENST00000444355.5_1_11:47267202-47270343:-|nuORF;ENSG00000134575|ENST00000672073|ACP2	ENST00000534448.5_1_11:47269480-47270343:-|nuORF	ENST00000534448.5_1_11:47269480-47270343:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	492.81451416015625	2	492.813659	983.612765	1.6113	0.00079405	1.1602	0.00057174	2.7714	0.0013658	492.8140437486098	118.58	0.7085	118.58	118.3	119.01	0					30	14	3	0	0	0	0.27001	1	13592	13592		66.429	0.6261	1	272020			54865	4310	45291	45330	59917	59917					0.12030326093906751
SRAAQIVE	8	Unmodified	_SRAAQIVE_					0	0	0			REV__NFKB1|p.S893R|1|0.04|ENSG00000109320|chr4:102613514-102613514|C/G|missense_variant	REV__NFKB1|p.S893R|1|0.04|ENSG00000109320|chr4:102613514-102613514|C/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	437.7524719238281	2	437.243067	872.47158	0.024518	1.072E-05	-4.3697	-0.0019106	-4.3451	-0.0018999	437.2405197332286	34.894	0.61334	34.894	34.632	35.246	0					18	12	2	0	0	0	0.028476	1	1690	1690		2.7184	0.1941	1	35858	+		54866	29251	45292	45331	59918	59918					0.03024327720618203
SRAATQELALL	11	Unmodified	_SRAATQELALL_					0	0	0		ENSG00000167880|ENST00000301607|EVPL;ENST00000587569.5_1_17:74014525-74023279:-|nuORF	ENSG00000167880|ENST00000301607|EVPL	ENSG00000167880|ENST00000301607|EVPL	MULTI-MSMS	OvCa9_classI_Rep2	2	586.8323364257812	2	586.83532	1171.65609	0.72441	0.00042511	-0.95381	-0.00055973	-0.2294	-0.00013462	586.8345916755596	91.526	1.7932	90.29	89.742	91.535	-1.2355					89	33	4	0	0	0	0.34475	1	8137	8137		65.157	0.94998	1	594470			54867	6845	45293	45332	59919	59919					0.07712471080503747
SRAAWAAP	8	Unmodified	_SRAAWAAP_					0	0	0			REV__ENST00000304658.9_1_16:28222843-28223173:-|nuORF	REV__ENST00000304658.9_1_16:28222843-28223173:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	416.1554260253906	2	415.219395	828.424236	0.50297	0.00020884	-0.41923	-0.00017407	0.083737	3.4769E-05	415.2190721203063	56.319	1.344	56.319	56.094	57.438	0					51	31	3	0	0	0	0.028476	1	4718	4718		40.573	0	1	3166600	+		54868	24277	45294	45333	59920	59920					0.0031609324026931063
SRADPSSPV	9	Unmodified	_SRADPSSPV_					0	0	0			REV__EBF2|p.P147Lfs*15|1|0.12|ENSG00000221818|chr8:26040070-26040071|-/A|frameshift_variant	REV__EBF2|p.P147Lfs*15|1|0.12|ENSG00000221818|chr8:26040070-26040071|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.2316589355469	2	458.230156	914.445759	0.15484	7.0953E-05	4.1877	0.0019189	4.3426	0.0019899	458.23194107413076	112.48	1.2522	110.97	110.69	111.94	-1.5111					65	24	4	0	0	0	0.22621	1	10390	10390		71.877	5.4482	1	402800	+		54869	16342	45295	45334	59921	59921					-0.0148856652166387
SRADPSSPV	9	Unmodified	_SRADPSSPV_					0	0	0			REV__EBF2|p.P147Lfs*15|1|0.12|ENSG00000221818|chr8:26040070-26040071|-/A|frameshift_variant	REV__EBF2|p.P147Lfs*15|1|0.12|ENSG00000221818|chr8:26040070-26040071|-/A|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	458.230156	914.445759	0.98112	0.00044958	3.6564	0.0016755	4.6375	0.002125	458.2316580599221	111.35	1.4787	111.21	110.73	112.21	-0.13961	0.16345	0.00030426	NaN	71.877	64	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157800	+		54870	16342	45295	45334							-0.0148856652166387
SRAFFARLL	9	Unmodified	_SRAFFARLL_					0	0	0			REV__ENST00000588822.1_1_17:74722977-74723331:+|nuORF	REV__ENST00000588822.1_1_17:74722977-74723331:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2813110351562	2	540.819276	1079.624	2.0785	0.0011241	-1.3906	-0.00075208	0.68784	0.000372	540.8185651005218	76.754	0.43974	76.754	76.443	76.882	0					14	10	2	0	0	0	0.027462	1	7716	7716		31.53	9.5699	1	162830	+		54871	27896	45296	45335	59922	59922					0.08737148188038191
SRAGGKLLK	9	Unmodified	_SRAGGKLLK_					0	0	0			REV__ENST00000418814.6_2_6:71123011-71123149:+|nuORF	REV__ENST00000418814.6_2_6:71123011-71123149:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	465.28631591796875	2	465.298176	928.581799	1.3508	0.00062853	-0.41331	-0.00019231	0.9375	0.00043622	465.2987674163584	126.06	0.6725	124.99	124.61	125.28	-1.0715					14	12	2	0	0	0	0.027252	1	9820	9820		80.455	0	1	28952	+		54872	25575	45297	45336	59923	59923					0.11465172779651311
SRAGPALF	8	Unmodified	_SRAGPALF_					0	0	0			REV__nc|ENSG00000134369|Q8NEY1-5|NAV1	REV__nc|ENSG00000134369|Q8NEY1-5|NAV1	MULTI-SECPEP	OvCa99_classI_Rep5	1	409.5507507324219	2	409.729595	817.444637	3.1655	0.001297	-0.64396	-0.00026385	2.5216	0.0010332	409.7291877449085	82.8	0.64013	82.8	82.609	83.249	0					29	14	3	0	0	0	0.028476	1	8634	8634		30.504	2.6214	1	980040	+		54873	19200	45298	45337	59924	59924					0.028612639000812123
SRAGWCALC	9	Unmodified	_SRAGWCALC_					0	0	0		ENST00000457380.5_1_X:46937884-46939716:+|nuORF	ENST00000457380.5_1_X:46937884-46939716:+|nuORF	ENST00000457380.5_1_X:46937884-46939716:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	483.71673583984375	2	483.717847	965.421141	2.0893	0.0010106	-3.3672	-0.0016288	-1.2779	-0.00061813	483.71602778061714	76.697	0.97109	76.697	76.365	77.336	0					55	23	3	0	0	0	0.52083	1	7741	7741		40.573	1.3198	1	1964600			54874	12124	45299	45338	59925	59925					-0.06295241200393775
SRAILQEVL	9	Unmodified	_SRAILQEVL_					0	0	0		nc|ENSG00000123453|Q9UL12-2|SARDH;ENSG00000123453|ENST00000439388|SARDH	nc|ENSG00000123453|Q9UL12-2|SARDH	nc|ENSG00000123453|Q9UL12-2|SARDH	MULTI-MSMS	OvCa99_classI_Rep5	1	514.8101196289062	2	514.808574	1027.60259	0.96181	0.00049515	1.91	0.00098329	2.8718	0.0014784	514.808909839147	109.6	0.53188	109.6	109.33	109.86	0					16	11	2	0	0	0	0.28108	1	12425	12425		65.157	3.3927	1	703990			54875	3594	45300	45339	59926	59926					0.0898971836866167
SRAKGQILQ	9	Unmodified	_SRAKGQILQ_					0	0	0			REV__ENSG00000269313|ENST00000595224|MAGIX	REV__ENSG00000269313|ENST00000595224|MAGIX	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.2408752441406	2	500.79854	999.582528	-0.55519	-0.00027804	0.2189	0.00010962	-0.33629	-0.00016842	500.7984402229881	29.263	0.24989	29.263	29.137	29.387	0					8	4	2	0	0	0	0.027462	1	1018	1018		14.865	0	1	40036	+		54876	23600	45301	45340	59927	59927					0.08271967428709104
SRAKKRRK	8	Unmodified	_SRAKKRRK_					0	0	0			REV__ENST00000603885.5_1_3:46966981-47017871:-|nuORF	REV__ENST00000603885.5_1_3:46966981-47017871:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7932739257812	2	515.341241	1028.66793	-0.65015	-0.00033505	2.7406	0.0014123	2.0904	0.0010773	515.342460633387	33.654	0.29277	33.654	33.483	33.776	0					12	5	3	0	0	0	0.028476	1	1542	1542		37.159	0	1	86157	+		54877	28053	45302	45341	59928	59928					0.15474177405030787
SRAPPARTV	9	Unmodified	_SRAPPARTV_					0	0	0		nc|ENSG00000168502|Q9Y4B5|MTCL1;ENSG00000168502|ENST00000695636|MTCL1;MTCL1|p.L439Rfs*20|1|0.24|ENSG00000168502|chr18:8720373-8720379|ACTTAAG/-|frameshift_variant	nc|ENSG00000168502|Q9Y4B5|MTCL1	nc|ENSG00000168502|Q9Y4B5|MTCL1	MULTI-MSMS	OvCa9_classI_Rep2	2	477.77752685546875	2	477.777608	953.540663	0.30924	0.00014775	-0.9987	-0.00047716	-0.68946	-0.00032941	477.7771636832581	43.542	2.3879	40.832	40.509	42.897	-2.7097					104	47	3	0	0	0	0.52629	1	2471	2471		40.058	2.2467	1	3363800			54878	6915	45303	45342	59929	59929					0.062034117401822186
SRAPTFVDLL	10	Unmodified	_SRAPTFVDLL_					0	0	0			REV__nc|ENSG00000112062|Q16539-5|MAPK14	REV__nc|ENSG00000112062|Q16539-5|MAPK14	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.8159790039062	2	559.813856	1117.61316	3.9956	0.0022368	-0.65346	-0.00036581	3.3422	0.001871	559.813249709843	134.7	2.6126	133.16	132.47	135.08	-1.5437					137	52	4	0	0	0	0.59317	1	13079	13079		42.864	5.7052	1	191680	+		54879	18073	45304	45343	59930	59930					0.05905701023107213
SRAPVFLQF	9	Unmodified	_SRAPVFLQF_					0	0	0		nc|ENSG00000182087|Q4ZIN3-2|TMEM259;ENSG00000182087|ENST00000356663|TMEM259	nc|ENSG00000182087|Q4ZIN3-2|TMEM259	nc|ENSG00000182087|Q4ZIN3-2|TMEM259	MULTI-MSMS	OvCa9_classI_Rep2	2	532.7967529296875	2	532.798009	1063.58147	-1.4512	-0.00077319	1.3209	0.00070379	-0.13025	-6.94E-05	532.7984173853858	115.26	1.5315	115.14	114.5	116.03	-0.11777					69	30	4	0	0	0	0.38969	3	10984	10975;10984;11005		52.937	3.4952	1	214400			54880	7966	45305	45344	59931;59932;59933	59932					0.052217530597772566
SRAPVFLQF	9	Unmodified	_SRAPVFLQF_					0	0	0		nc|ENSG00000182087|Q4ZIN3-2|TMEM259;ENSG00000182087|ENST00000356663|TMEM259	nc|ENSG00000182087|Q4ZIN3-2|TMEM259	nc|ENSG00000182087|Q4ZIN3-2|TMEM259	MULTI-MSMS	OvCa9_classI_Rep3	3	532.7978515625	2	532.798009	1063.58147	-0.1562	-8.3225E-05	0.095187	5.0715E-05	-0.061017	-3.251E-05	532.7977812611238	116.26	1.3343	115.22	114.85	116.18	-1.0414					60	26	3	0	0	0	0.26076	4	8682	8666;8669;8682;8695		67.494	13.699	1	254790			54881	7966	45305	45344	59934;59935;59936;59937	59936					0.052217530597772566
SRAPVFLQF	9	Unmodified	_SRAPVFLQF_					0	0	0		nc|ENSG00000182087|Q4ZIN3-2|TMEM259;ENSG00000182087|ENST00000356663|TMEM259	nc|ENSG00000182087|Q4ZIN3-2|TMEM259	nc|ENSG00000182087|Q4ZIN3-2|TMEM259	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.796875	2	532.798009	1063.58147	-1.0811	-0.000576	0.49498	0.00026373	-0.5861	-0.00031227	532.7980414448721	116.58	1.2384	115.22	114.84	116.08	-1.3645					51	23	3	0	0	0	0.16264	2	10893	10881;10893		82.75	10.873	1	276520			54882	7966	45305	45344	59938;59939	59939					0.052217530597772566
SRARKSGQL	9	Unmodified	_SRARKSGQL_					0	0	0		ENST00000450728.1_1_2:200334820-200335477:+|nuORF	ENST00000450728.1_1_2:200334820-200335477:+|nuORF	ENST00000450728.1_1_2:200334820-200335477:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	501.7926025390625	2	501.793789	1001.57303	-1.2838	-0.00064422	-2.908	-0.0014592	-4.1918	-0.0021034	501.79220196791607	48.181	1.5395	45.472	45.034	46.573	-2.7097					63	30	3	0	0	0	0.58322	1	2965	2965		33.922	2.3918	1	142540			54883	12042	45306	45345	59940	59940					0.07230199143191385
SRARSCLAAGR	11	Unmodified	_SRARSCLAAGR_					0	0	0		ENST00000292430.10_2_8:143781640-143781772:+|nuORF	ENST00000292430.10_2_8:143781640-143781772:+|nuORF	ENST00000292430.10_2_8:143781640-143781772:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	574.8359375	2	574.309281	1146.60401	0.91413	0.00052499	-2.2542	-0.0012946	-1.3401	-0.00076963	574.3082544761374	89.562	0.94111	88.26	87.938	88.879	-1.302					34	18	2	0	0	0	0.025541	1	7953	7953		45.022	27.554	1	61534			54884	10100	45307	45346	59941	59941					0.03657029185774263
SRASIAFKVD	10	Unmodified	_SRASIAFKVD_					0	0	0			REV__tr|A0A553SGK9|A0A553SGK9_NIACI23SrRNA(Uracil(1939)-C(5))-methyltransferaseRlmDOS=NialliacirculansOX=1397GN=rlmDPE=3SV=1	REV__tr|A0A553SGK9|A0A553SGK9_NIACI23SrRNA(Uracil(1939)-C(5))-methyltransferaseRlmDOS=NialliacirculansOX=1397GN=rlmDPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.2211303710938	2	547.303655	1092.59276	1.0293	0.00056332	-0.90088	-0.00049306	0.12838	7.0261E-05	547.3024331011266	150.28	0.75034	150.28	149.94	150.69	0					27	14	3	0	0	0	0.027062	1	17632	17632		20.03	3.5573	1	29487	+		54885	29715	45308	45347	59942	59942					0.050165303632638825
SRASPVRLL	9	Unmodified	_SRASPVRLL_					0	0	0		ENSG00000141873|ENST00000269740|SLC39A3	ENSG00000141873|ENST00000269740|SLC39A3	ENSG00000141873|ENST00000269740|SLC39A3	MULTI-MSMS	OvCa99_classI_Rep5	1	499.809814453125	2	499.808908	997.603263	0.079542	3.9756E-05	-0.30874	-0.00015431	-0.2292	-0.00011456	499.80861163462697	62.36	0.97771	62.36	62.122	63.1	0					49	23	4	0	0	0	0.16562	1	5543	5543		82.241	10.945	1	4705500			54886	4944	45309	45348	59943	59943					0.10436557808372982
SRASWGACPV	10	Unmodified	_SRASWGACPV_					0	0	0		ENST00000334512.9_1_10:81073638-81074007:+|nuORF	ENST00000334512.9_1_10:81073638-81074007:+|nuORF	ENST00000334512.9_1_10:81073638-81074007:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.287841796875	2	517.247826	1032.4811	-1.0379	-0.00053687	3.2942	0.0017039	2.2562	0.001167	517.2493402712954	39.876	0.34884	39.876	39.711	40.06	0					14	7	3	0	0	0	0.026956	1	2375	2375		34.173	3.6689	1	260630			54887	10484	45310	45349	59944	59944					-0.03384227265519257
SRATQIAQI	9	Unmodified	_SRATQIAQI_					0	0	0			REV__tr|A0A553SSM9|A0A553SSM9_NIACICof-typeHAD-IIBfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_03425PE=4SV=1	REV__tr|A0A553SSM9|A0A553SSM9_NIACICof-typeHAD-IIBfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_03425PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.7663879394531	2	494.282723	986.550893	0.0028749	1.421E-06	-0.55725	-0.00027544	-0.55438	-0.00027402	494.2826633760859	62.329	0.45862	62.329	62.122	62.581	0					17	10	2	0	0	0	0.027418	1	5515	5515		40.058	8.5284	1	352190	+		54888	30852	45311	45350	59945	59945					0.0570797467473767
SRAVTLTLN	9	Unmodified	_SRAVTLTLN_					0	0	0			REV__ENSG00000107438|ENST00000329399|PDLIM1	REV__ENSG00000107438|ENST00000329399|PDLIM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.2237243652344	2	487.785099	973.555644	-0.50363	-0.00024566	0.37606	0.00018344	-0.12757	-6.2226E-05	487.78517629571905	41.308	0.40142	41.308	41.104	41.505	0					15	8	2	0	0	0	0.027462	1	2567	2567		20.947	0	1	228910	+		54889	17845	45312	45351	59946	59946					0.0678085881751258
SRAVVVKKI	9	Unmodified	_SRAVVVKKI_					0	0	0		CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF	CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8	ENSG00000170421|ENST00000692008|KRT8	MULTI-MSMS	OvCa99_classI_Rep5	1	500.3370666503906	2	500.337301	998.66005	-0.46955	-0.00023493	-0.016717	-8.3642E-06	-0.48627	-0.0002433	500.3372433032782	35.347	1.0734	35.347	34.911	35.984	0					43	22	3	0	0	0	0.38969	1	1768	1768		52.937	10.462	1	1901700		+	54890	622;610	45313	45352	59947	59947					0.16066605364903808
SRCAPRFISL	10	Unmodified	_SRCAPRFISL_					0	0	0		ENST00000425150.1_1_X:51099862-51139170:-|nuORF	ENST00000425150.1_1_X:51099862-51139170:-|nuORF	ENST00000425150.1_1_X:51099862-51139170:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	575.3099975585938	2	575.3135	1148.61245	-1.1239	-0.00064659	-4.237	-0.0024376	-5.3609	-0.0030842	575.3111142499293	98.321	3.118	97.428	96.974	100.09	-0.89306					184	62	6	0	0	0	0.063542	2	8989	8961;8989		124.08	25.498	1	5141200			54891	11717	45314	45353	59948;59949	59949					0.04408583102394914
SRCKFFSL	8	Unmodified	_SRCKFFSL_					0	0	0		ENST00000463795.5_1_22:30682689-30685486:-|nuORF;ENSG00000239282|ENST00000407689|CASTOR1	ENST00000463795.5_1_22:30682689-30685486:-|nuORF	ENST00000463795.5_1_22:30682689-30685486:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2732849121094	2	494.257662	986.500772	-0.19129	-9.4544E-05	3.3174	0.0016396	3.1261	0.0015451	494.2589926766036	69.084	0.20854	69.084	69.019	69.228	0					5	4	2	0	0	0	0.028476	1	6574	6574		49.442	13.823	1	166730			54892	9324	45315	45354	59950	59950					0.006981487452662805
SRCKFLLI	8	Unmodified	_SRCKFLLI_					0	0	0			REV__LMBRD2|p.P127Ffs*34|1|0.05|ENSG00000164187|chr5:36137431-36137432|-/ATAATACTATTTACAGACTCACTCCTACATTTAAA|frameshift_variant	REV__LMBRD2|p.P127Ffs*34|1|0.05|ENSG00000164187|chr5:36137431-36137432|-/ATAATACTATTTACAGACTCACTCCTACATTTAAA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.2776184082031	2	490.291505	978.568457	-1.8438	-0.00090402	-2.1971	-0.0010772	-4.0409	-0.0019812	490.2908215308024	104.38	0.17048	104.38	104.28	104.45	0					5	3	2	0	0	0	0.028476	1	11692	11692		29.15	0	1	180750	+		54893	28623	45316	45355	59951	59951					0.07831598676068552
SRCLGLIRDL	10	Unmodified	_SRCLGLIRDL_					0	0	0		tr|A0A7D6VNC4|A0A7D6VNC4_9CLOTProbablelipidIIflippaseMurJOS=ClostridiumintestinaleOX=36845GN=murJPE=3SV=1	tr|A0A7D6VNC4|A0A7D6VNC4_9CLOTProbablelipidIIflippaseMurJOS=ClostridiumintestinaleOX=36845GN=murJPE=3SV=1	tr|A0A7D6VNC4|A0A7D6VNC4_9CLOTProbablelipidIIflippaseMurJOS=ClostridiumintestinaleOX=36845GN=murJPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	573.3237915039062	2	573.326608	1144.63866	0.088431	5.07E-05	-4.2545	-0.0024392	-4.1661	-0.0023885	573.3237997741434	111.56	0.68458	110.05	109.79	110.47	-1.5111					28	12	3	0	0	0	0.49595	1	10290	10290		54.722	7.065	1	132030			54894	34692	45317	45356	59952	59952					0.0721285227386943
SRCLGLVWLG	10	Unmodified	_SRCLGLVWLG_					0	0	0			REV__ENST00000526337.5_3_11:4624559-4629443:-|nuORF	REV__ENST00000526337.5_3_11:4624559-4629443:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	551.8345336914062	2	552.305144	1102.59573	-0.31779	-0.00017552	-4.2521	-0.0023484	-4.5699	-0.002524	552.3021064624263	108.13	0.88296	106.93	106.48	107.36	-1.1978					21	16	2	0	0	0	0.026891	1	7742	7742		47.657	0	1	13052	+		54895	24237	45318	45357	59953	59953					0.048540822164113706
SRCNLCCVLI	10	3 Carbamidomethyl (C)	_SRC(Carbamidomethyl (C))NLC(Carbamidomethyl (C))C(Carbamidomethyl (C))VLI_	SRC(1)NLC(1)C(1)VLI		SRC(67)NLC(67)C(67)VLI		0	3	0			REV__Harlequin-int_dup161|chr4:91353598-91357139:-|1.3911466287095282|0.2716421829311496|2.36|422.0|196|2|anti-sense	REV__Harlequin-int_dup161|chr4:91353598-91357139:-|1.3911466287095282|0.2716421829311496|2.36|422.0|196|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	432.2234802246094	3	432.207004	1293.59918	-0.39276	-0.00016975	0.2817	0.00012175	-0.11105	-4.7998E-05	432.2061790806265	59.611	0.27389	59.611	59.452	59.726	0					12	6	3	0	0	0	0.02709	1	5153	5153		66.962	13.949	1	157550	+		54896	28173	45319	45358	59954	59954	345;346;347				-0.03587359063521944
SRCPFARLVT	10	Unmodified	_SRCPFARLVT_					0	0	0			REV__ENSG00000008382|ENST00000599840|MPND	REV__ENSG00000008382|ENST00000599840|MPND	MULTI-MSMS	OvCa9_classI_Rep3	3	575.3114013671875	2	575.3135	1148.61245	-0.889	-0.00051145	-4.0304	-0.0023187	-4.9194	-0.0028302	575.3111564833367	99.127	2.7262	97.442	97.061	99.787	-1.685					178	53	6	0	0	0	0.11632	1	6690	6690		109.48	13.445	1	7573400	+		54897	16454	45320	45359	59955	59955					0.04408583102372177
SRCPFARLVT	10	Unmodified	_SRCPFARLVT_					0	0	0			REV__ENSG00000008382|ENST00000599840|MPND	REV__ENSG00000008382|ENST00000599840|MPND	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.3118286132812	2	575.3135	1148.61245	-1.245	-0.00071626	-3.8085	-0.0021911	-5.0535	-0.0029073	575.3112834479634	99.615	3.1767	97.29	96.951	100.13	-2.3253					165	62	6	0	0	0	0.36605	1	8957	8957		72.879	3.2516	1	6971900	+		54898	16454	45320	45359	59956	59956					0.04408583102372177
SRCRWPTRS	9	Unmodified	_SRCRWPTRS_					0	0	0			REV__chr17:50188149-50192994|115|1060.72|0.76|10.44|-|2|COL1A1,COL1A1|1	REV__chr17:50188149-50192994|115|1060.72|0.76|10.44|-|2|COL1A1,COL1A1|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.876953125	2	574.790724	1147.56689	-2.7515	-0.0015815	3.518	0.0020221	0.7665	0.00044057	574.7920754254446	104.17	0.38336	104.17	103.98	104.36	0					13	8	2	0	0	0	0.027462	1	11657	11657		26.693	0	1	174260	+		54899	15949	45321	45360	59957	59957					-0.0009864236001249083
SRCSPPCARA	10	Carbamidomethyl (C)	_SRC(Carbamidomethyl (C))SPPCARA_	SRC(1)SPPCARA		SRC(47)SPPC(-47)ARA		0	1	0		ENST00000522223.1_7:102233482-102234290:-|nuORF	ENST00000522223.1_7:102233482-102234290:-|nuORF	ENST00000522223.1_7:102233482-102234290:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	552.7578735351562	2	552.755492	1103.49643	0.68966	0.00038121	1.5262	0.0008436	2.2158	0.0012248	552.7561122968601	152.06	1.5504	152.06	151.7	153.25	0					69	35	3	0	0	0	0.53807	1	17810	17810		49.536	8.9634	2	188800			54900	13135	45322	45361	59958	59958	153				-0.05117683739968015
SRDFIKGDD	9	Unmodified	_SRDFIKGDD_					0	0	0		ENSG00000141434|ENST00000269202|MEP1B	ENSG00000141434|ENST00000269202|MEP1B	ENSG00000141434|ENST00000269202|MEP1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.2380981445312	2	526.753995	1051.49344	-0.093943	-4.9485E-05	0.52103	0.00027445	0.42708	0.00022497	526.7536693581568	46.456	0.61078	46.456	46.198	46.809	0					35	13	4	0	0	0	0.027462	1	3308	3308		25.574	6.2141	1	446330			54901	4912	45323	45362	59959	59959					-0.030249123214844076
SRDKKAQPVL	10	Unmodified	_SRDKKAQPVL_					0	0	0			REV__ENSG00000160753|ENST00000368352|RUSC1	REV__ENSG00000160753|ENST00000368352|RUSC1	MULTI-MSMS	OvCa99_classI_Rep5	1	571.33984375	2	571.33803	1140.66151	1.9053	0.0010886	-0.16472	-9.411E-05	1.7406	0.00099445	571.3379336706763	78.18	1.4109	78.18	77.544	78.955	0					90	33	5	0	0	0	0.39172	1	7951	7951		69.628	9.5094	1	18361000	+		54902	20671	45324	45363	59960	59960					0.09680194662996655
SRDRYRHFYLL	11	Unmodified	_SRDRYRHFYLL_					0	0	0		ENST00000519875.1_1_8:21997445-21997756:-|nuORF	ENST00000519875.1_1_8:21997445-21997756:-|nuORF	ENST00000519875.1_1_8:21997445-21997756:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	509.27166748046875	3	509.27227	1524.79498	0.77642	0.00039541	-2.0826	-0.0010606	-1.3062	-0.00066522	509.2711434456893	66.676	1.6117	63.788	63.477	65.089	-2.8873					96	31	5	0	0	0	0.71321	1	2792	2792		25.126	4.811	1	276460			54903	13093	45325	45364	59961	59961					0.053574337687223306
SRDSAPSPV	9	Unmodified	_SRDSAPSPV_					0	0	0		ENSG00000165506|ENST00000298292|DNAAF2;nc|ENSG00000165506|Q9NVR5-2|DNAAF2;DNAAF2|p.L548Hfs*38|1|0.08|ENSG00000165506|chr14:49633507-49633508|-/ATGCTGGGATTACAGGCGT|frameshift_variant	ENSG00000165506|ENST00000298292|DNAAF2	ENSG00000165506|ENST00000298292|DNAAF2	MULTI-MSMS	OvCa9_classI_Rep3	3	458.23199462890625	2	458.230156	914.445759	1.8134	0.00083094	2.7442	0.0012575	4.5576	0.0020884	458.2313291675252	112.07	1.2814	110.97	110.65	111.93	-1.1038					60	25	3	0	0	0	0.36502	1	8172	8172		55.504	2.1528	1	387070			54904	6570	45326	45365	59962	59962					-0.0148856652166387
SRDSKEGLV	9	Unmodified	_SRDSKEGLV_					0	0	0			REV__tr|A0A7D7A4B0|A0A7D7A4B0_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00915PE=3SV=1	REV__tr|A0A7D7A4B0|A0A7D7A4B0_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00915PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	495.7648010253906	2	495.764363	989.514173	-0.75952	-0.00037654	0.30237	0.00014991	-0.45715	-0.00022664	495.7644261293329	28.863	0.29907	28.863	28.688	28.987	0					14	5	3	0	0	0	0.19758	1	976	976		76.774	14.667	1	245090	+		54905	32602	45327	45366	59963	59963					0.018996780581915118
SRDVHSPAVCL	11	Unmodified	_SRDVHSPAVCL_					0	0	0			REV__ENSG00000218823|ENST00000404991|PAPOLB	REV__ENSG00000218823|ENST00000404991|PAPOLB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	592.8253784179688	2	592.298047	1182.58154	1.2356	0.00073186	-1.2767	-0.00075617	-0.041034	-2.4304E-05	592.2967033991916	97.219	0.96211	94.799	94.57	95.532	-2.42					27	18	3	0	0	0	0.025528	1	8624	8624		21.686	6.8209	1	75730	+		54906	23330	45328	45367	59964	59964					-0.002446150024979943
SRDWISIL	8	Unmodified	_SRDWISIL_					0	0	0			REV__nc|ENSG00000114650|Q12770-3|SCAP	REV__nc|ENSG00000114650|Q12770-3|SCAP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.298583984375	2	495.274367	988.53418	0.70898	0.00035114	2.932	0.0014522	3.641	0.0018033	495.27568839728724	89.549	0.74828	86.974	86.752	87.501	-2.575					22	14	2	0	0	0	0.028476	1	7706	7706		79.451	13.022	1	32007	+		54907	18194	45329	45368	59965	59965					0.03945473788814979
SREARDELP	9	Unmodified	_SREARDELP_					0	0	0		nc|ENSG00000170037|Q8N137-5|CNTROB;ENSG00000170037|ENST00000563694|CNTROB;nc|ENSG00000170037|Q8N137-3|CNTROB;nc|ENSG00000170037|Q8N137-2|CNTROB;ENST00000576723.5_1_17:7843028-7852016:+|nuORF;CNTROB|p.P683Hfs*15|1|0.09|ENSG00000170037|chr17:7947624-7947624|C/-|frameshift_variant	nc|ENSG00000170037|Q8N137-5|CNTROB	nc|ENSG00000170037|Q8N137-5|CNTROB	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.7982788085938	2	536.772719	1071.53089	0.63104	0.00033873	-3.6164	-0.0019412	-2.9853	-0.0016024	537.2719013561597	78.228	0.30384	75.875	75.596	75.9	-2.3527					9	5	3	0	0	0	0.027455	1	4118	4118		51.335	10.557	1	13817			54908	7067	45330	45369	59966	59966					-0.002018210558617284
SREEKNDPD	9	Unmodified	_SREEKNDPD_					0	0	0			REV__nc|ENSG00000001626|P13569-2|CFTR	REV__nc|ENSG00000001626|P13569-2|CFTR	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.8207397460938	2	545.243992	1088.47343	-0.94531	-0.00051543	-0.12119	-6.608E-05	-1.0665	-0.00058151	545.7472960464462	117.37	0.36465	116.01	115.82	116.19	-1.3645					9	6	2	0	0	0	0.027462	1	10976	10976		13.454	0	1	7167.5	+		54909	16362	45331	45370	59967	59967					-0.06726708052087815
SREELSLFL	9	Unmodified	_SREELSLFL_					0	0	0		ENST00000424834.6_1_13:24876941-24877007:+|nuORF	ENST00000424834.6_1_13:24876941-24877007:+|nuORF	ENST00000424834.6_1_13:24876941-24877007:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	546.3036499023438	2	547.298039	1092.58152	-0.62539	-0.00034228	1.5809	0.00086521	0.95548	0.00052293	547.2990032117261	114.63	1.4806	113.58	113.25	114.74	-1.055					54	29	2	0	0	0	0.027462	1	8588	8588		45.952	0	1	184650			54910	11714	45332	45371	59968	59968					0.0389370826915183
SREENWSF	8	Unmodified	_SREENWSF_					0	0	0		ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.3042602539062	2	527.733063	1053.45157	-0.92894	-0.00049023	-2.8816	-0.0015207	-3.8105	-0.0020109	528.2333078106454	96.212	0.40488	93.786	93.559	93.964	-2.4256					11	7	2	0	0	0	0.028476	1	8458	8458		30.504	1.3541	1	9816.2			54911	1329	45333	45372	59969	59969					-0.07301468009995915
SREITKMQ	8	Unmodified	_SREITKMQ_					0	0	0		ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	ENSG00000182636|ENST00000649030|NDN	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.2460021972656	2	496.763309	991.512065	1.9422	0.0009648	0.80106	0.00039794	2.7432	0.0013627	496.7635783515179	100.27	0.42221	100.27	100.07	100.49	0					17	9	3	0	0	0	0.028476	1	11140	11140		38.806	0	1	266030			54912	8017	45334	45373	59970	59970					0.01596926048739533
SREKIKPI	8	Unmodified	_SREKIKPI_					0	0	0		tr|A0A553ST58|A0A553ST58_NIACIAroMfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_04350PE=4SV=1	tr|A0A553ST58|A0A553ST58_NIACIAroMfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_04350PE=4SV=1	tr|A0A553ST58|A0A553ST58_NIACIAroMfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_04350PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.293212890625	2	485.805834	969.597115	1.6319	0.00079281	4.2387	0.0020592	5.8707	0.002852	485.8077559959522	135.61	0.70555	135.61	135.36	136.07	0					26	14	3	0	0	0	0.028476	1	15788	15788		68.787	0	1	88869			54913	34457	45335	45374	59971	59971					0.11110039576851705
SREKQLAALE	10	Unmodified	_SREKQLAALE_					0	0	0			REV__ENSG00000135090|ENST00000392533|TAOK3	REV__ENSG00000135090|ENST00000392533|TAOK3	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.265380859375	2	572.81967	1143.62479	0.39307	0.00022516	3.037	0.0017397	3.4301	0.0019648	572.821202189325	81.312	0.41356	81.312	81.08	81.493	0					18	9	3	0	0	0	0.026602	1	8347	8347		75.043	20.267	1	302320	+		54914	19256	45336	45375	59972	59972					0.058718980464163906
SREKQLAALE	10	Unmodified	_SREKQLAALE_					0	0	0			REV__ENSG00000135090|ENST00000392533|TAOK3	REV__ENSG00000135090|ENST00000392533|TAOK3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	572.81967	1143.62479	0.31824	0.00018229	-2.3872	-0.0013674	-2.069	-0.0011851	572.8181752879232	84.22	0.36379	81.557	81.458	81.822	-2.6629	0.12242	-0.0026393	NaN	75.043	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103200	+		54915	19256	45336	45375							0.058718980464163906
SRELYEKI	8	Unmodified	_SRELYEKI_					0	0	0		tr|A0A7D6VTT1|A0A7D6VTT1_9CLOTPrimosomalproteinN'OS=ClostridiumintestinaleOX=36845GN=priAPE=3SV=1	tr|A0A7D6VTT1|A0A7D6VTT1_9CLOTPrimosomalproteinN'OS=ClostridiumintestinaleOX=36845GN=priAPE=3SV=1	tr|A0A7D6VTT1|A0A7D6VTT1_9CLOTPrimosomalproteinN'OS=ClostridiumintestinaleOX=36845GN=priAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2755737304688	2	519.284931	1036.55531	-0.66427	-0.00034494	1.7858	0.00092733	1.1215	0.00058239	519.2863035274261	73.113	0.28125	73.113	72.954	73.235	0					11	6	2	0	0	0	0.028476	1	7141	7141		37.159	12.64	1	443270			54916	35140	45337	45376	59973	59973					0.03849439097666618
SREPGRRLR	9	Unmodified	_SREPGRRLR_					0	0	0			REV__ENST00000395184.5_1_4:86396313-86396598:+|nuORF	REV__ENST00000395184.5_1_4:86396313-86396598:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.8334350585938	2	563.831237	1125.64792	2.2134	0.001248	-0.3783	-0.0002133	1.8351	0.0010347	563.8309218791892	37.159	1.6426	34.266	33.943	35.586	-2.8925					74	32	4	0	0	0	0.24951	1	1358	1358		68.787	4.5796	1	421830	+		54917	25309	45338	45377	59974	59974					0.09012381674415337
SREQHCHGR	9	Unmodified	_SREQHCHGR_					0	0	0			REV__ENSG00000177992|ENST00000325643|SPATA31E1	REV__ENSG00000177992|ENST00000325643|SPATA31E1	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.8063354492188	2	555.254505	1108.49446	1.2591	0.00069909	-4.1594	-0.0023095	-2.9003	-0.0016104	555.2538064813555	155.14	0.49759	155.14	154.83	155.33	0					21	9	3	0	0	0	0.027462	1	18171	18171		31.53	0	1	34633	+		54918	22037	45339	45378	59975	59975					-0.05544976433543525
SREQLDSLPL	10	Unmodified	_SREQLDSLPL_					0	0	0			REV__ENST00000250930.7_1_16:421957-422041:-|nuORF	REV__ENST00000250930.7_1_16:421957-422041:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.3123779296875	2	579.311677	1156.6088	-1.698	-0.00098369	1.3073	0.00075733	-0.39074	-0.00022636	579.3123798976957	100.15	1.4185	97.825	97.315	98.734	-2.3253					83	27	4	0	0	0	0.43433	1	8955	8955		63.534	0	1	1089800	+		54919	23861	45340	45379	59976	59976					0.03676191809518059
SREREVAL	8	Unmodified	_SREREVAL_					0	0	0			REV__nc|ENSG00000176155|Q2TAC2-2|CCDC57	REV__nc|ENSG00000176155|Q2TAC2-2|CCDC57	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.3029479980469	2	480.267073	958.519593	-0.90169	-0.00043305	0.66815	0.00032089	-0.23353	-0.00011216	480.2672660454472	27.597	0.40096	27.597	27.44	27.841	0					14	7	4	0	0	0	0.028476	1	811	811		38.806	0	1	62397	+		54920	21934	45341	45380	59977	59977					0.03867401640661683
SRERRLKV	8	Unmodified	_SRERRLKV_					0	0	0		NRF1-FAM40B|1|fusion;nc|ENSG00000128578|Q9ULQ0-2|STRIP2;NRF1-FAM40B|2|fusion;ENSG00000128578|ENST00000249344|STRIP2;STRIP2|p.N588Tfs*21|1|0.05|ENSG00000128578|chr7:129464723-129464723|C/-|frameshift_variant	NRF1-FAM40B|1|fusion	NRF1-FAM40B|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.817626953125	2	522.325257	1042.63596	0.59652	0.00031158	1.4354	0.00074975	2.0319	0.0010613	522.3258067160773	66.564	1.4392	63.868	63.418	64.857	-2.6958					38	28	2	0	0	0	0.028476	1	5255	5255		21.96	0	1	36399			54921	3886	45342	45381	59978	59978					0.11634764931227437
SRERRLKVAR	10	Unmodified	_SRERRLKVAR_					0	0	0		NRF1-FAM40B|1|fusion;nc|ENSG00000128578|Q9ULQ0-2|STRIP2;NRF1-FAM40B|2|fusion;ENSG00000128578|ENST00000249344|STRIP2;STRIP2|p.N588Tfs*21|1|0.05|ENSG00000128578|chr7:129464723-129464723|C/-|frameshift_variant	NRF1-FAM40B|1|fusion	NRF1-FAM40B|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	424.9111633300781	3	424.265338	1269.77419	-0.2851	-0.00012096	2.4325	0.001032	2.1474	0.00091107	424.26625444386275	64.328	1.1028	61.603	61.234	62.336	-2.7245					43	20	3	0	0	0	0.027233	1	4977	4977		3.6191	0	1	61815			54922	3886	45343	45382	59979	59979					0.15008888179704627
SREVKSMLI	9	Unmodified	_SREVKSMLI_					0	0	0			REV__ENST00000471257.5_1_1:235377084-235377189:-|nuORF	REV__ENST00000471257.5_1_1:235377084-235377189:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	531.8011474609375	2	531.802434	1061.59032	1.7873	0.00095047	-2.6347	-0.0014011	-0.8474	-0.00045065	531.8006694785034	93.114	1.3717	93.114	92.428	93.799	0					87	32	4	0	0	0	0.22035	1	10078	10078		72.879	4.0924	1	14353000	+		54923	26275	45344	45383	59980	59980					0.061983586339920294
SREVVEAYA	9	Unmodified	_SREVVEAYA_					0	0	0		tr|A0A7D6ZQP3|A0A7D6ZQP3_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01160PE=3SV=1	tr|A0A7D6ZQP3|A0A7D6ZQP3_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01160PE=3SV=1	tr|A0A7D6ZQP3|A0A7D6ZQP3_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01160PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.2424926757812	2	512.258914	1022.50327	-0.022092	-1.1317E-05	-1.1699	-0.00059928	-1.192	-0.00061059	512.2582749063166	75.743	1.1003	72.804	72.497	73.598	-2.9389					46	22	3	0	0	0	0.027462	1	5969	5969		23.042	6.5693	1	299450			54924	35704	45345	45384	59981	59981					-0.007077243161006663
SREVVEAYA	9	Unmodified	_SREVVEAYA_					0	0	0		tr|A0A7D6ZQP3|A0A7D6ZQP3_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01160PE=3SV=1	tr|A0A7D6ZQP3|A0A7D6ZQP3_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01160PE=3SV=1	tr|A0A7D6ZQP3|A0A7D6ZQP3_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01160PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	512.258914	1022.50327	-0.4973	-0.00025475	-0.35018	-0.00017939	-0.84749	-0.00043413	512.2587000434522	74.814	1.1449	72.843	72.324	73.469	-1.9711	0.019268	0.00028712	NaN	23.042	51	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65723			54925	35704	45345	45384							-0.007077243161006663
SRFALPALL	9	Unmodified	_SRFALPALL_					0	0	0		ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	MULTI-MSMS	OvCa9_classI_Rep2	2	494.3021240234375	2	494.302927	986.591301	0.81214	0.00040144	-1.0562	-0.00052209	-0.24407	-0.00012065	494.30223351150516	125.12	0.64149	124.89	124.47	125.11	-0.2359					24	12	3	0	0	0	0.16524	1	12180	12180		82.305	25.584	1	79962			54926	6288	45346	45385	59982	59982					0.09746941065179726
SRFFKGAIFPT	11	Unmodified	_SRFFKGAIFPT_					0	0	0		ENST00000519868.1_1_5:169502602-169506159:+|nuORF	ENST00000519868.1_1_5:169502602-169506159:+|nuORF	ENST00000519868.1_1_5:169502602-169506159:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	424.8902282714844	3	424.236274	1269.68699	-0.14331	-6.0798E-05	4.2433	0.0018002	4.1	0.0017394	424.57304642782196	21.448	0.15181	20.109	20.017	20.169	-1.3386					4	2	2	0	0	0	0.025863	1	164	164		31.068	18.111	1	6798.5			54927	13092	45347	45386	59983	59983					0.06293669185401995
SRFGLFWRI	9	Unmodified	_SRFGLFWRI_					0	0	0		tr|A0A553SGK4|A0A553SGK4_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_10985PE=3SV=1	tr|A0A553SGK4|A0A553SGK4_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_10985PE=3SV=1	tr|A0A553SGK4|A0A553SGK4_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_10985PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	592.2922973632812	2	591.33255	1180.65055	0.11201	6.6233E-05	3.9044	0.0023088	4.0164	0.0023751	591.3350369056872	31.194	0.18874	31.194	31.076	31.264	0					6	3	2	0	0	0	0.027462	1	1261	1261		15.642	0	1	30333			54928	33168	45348	45387	59984	59984					0.06744837079372701
SRFLAQSFF	9	Unmodified	_SRFLAQSFF_					0	0	0			REV__ENST00000534101.1_1_1:46049764-46072228:+|nuORF	REV__ENST00000534101.1_1_1:46049764-46072228:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.3160400390625	2	551.787641	1101.56073	1.214	0.00066986	4.4517	0.0024564	5.6657	0.0031263	552.2926234715547	113.9	0.22556	113.9	113.83	114.06	0					7	4	2	0	0	0	0.027462	1	12993	12993		47.657	0	1	68960	+		54929	26144	45349	45388	59985	59985					0.0140116268012207
SRFLLVPSP	9	Unmodified	_SRFLLVPSP_					0	0	0		ENST00000422447.7_1_11:18416109-18418399:+|nuORF	ENST00000422447.7_1_11:18416109-18418399:+|nuORF	ENST00000422447.7_1_11:18416109-18418399:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3155822753906	2	508.300384	1014.58622	-0.44261	-0.00022498	2.2667	0.0011522	1.8241	0.00092719	508.3013349367129	105.25	0.59474	103.24	103	103.6	-2.0161					24	11	3	0	0	0	0.027462	1	9588	9588		15.642	0	1	50595			54930	11694	45350	45389	59986	59986					0.07950637202566213
SRGDFVVEY	9	Unmodified	_SRGDFVVEY_					0	0	0		ENST00000437519.5_1_12:123868737-123892247:+|nuORF;ENSG00000183955|ENST00000402868|KMT5A;nc|ENSG00000183955|Q9NQR1|KMT5A	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	536.2588500976562	2	536.258914	1070.50327	-1.821	-0.00097655	0.68438	0.00036701	-1.1367	-0.00060954	536.2591895104723	85.72	2.0297	84.229	83.752	85.781	-1.4906					113	39	4	0	0	0	0.2422	4	7428	7428;7434;7459;7471		69.628	9.3337	1	557560			54931	8124	45351	45390	59987;59988;59989;59990	59987					-0.029157243160852886
SRGDFVVEY	9	Unmodified	_SRGDFVVEY_					0	0	0		ENST00000437519.5_1_12:123868737-123892247:+|nuORF;ENSG00000183955|ENST00000402868|KMT5A;nc|ENSG00000183955|Q9NQR1|KMT5A	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	536.2600708007812	2	536.258914	1070.50327	-0.025326	-1.3581E-05	-0.4813	-0.0002581	-0.50662	-0.00027168	536.2585904824281	86.379	2.2789	84.158	83.486	85.765	-2.2204					120	44	5	0	0	0	0.26076	5	5136	5130;5136;5142;5156;5162		67.494	12.717	1	1336700			54932	8124	45351	45390	59991;59992;59993;59994;59995	59992					-0.029157243160852886
SRGDFVVEY	9	Unmodified	_SRGDFVVEY_					0	0	0		ENST00000437519.5_1_12:123868737-123892247:+|nuORF;ENSG00000183955|ENST00000402868|KMT5A;nc|ENSG00000183955|Q9NQR1|KMT5A	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	ENST00000437519.5_1_12:123868737-123892247:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.2598876953125	2	536.258914	1070.50327	-0.86028	-0.00046133	-0.1362	-7.3037E-05	-0.99647	-0.00053437	536.2587818261826	86.964	1.8044	84.337	84.054	85.858	-2.6269					95	35	4	0	0	0	0.26076	2	7394	7368;7394		67.494	5.3348	1	1290100			54933	8124	45351	45390	59996;59997	59997					-0.029157243160852886
SRGDLETAF	9	Unmodified	_SRGDLETAF_					0	0	0		ENSG00000165917|ENST00000298854|RAPSN	ENSG00000165917|ENST00000298854|RAPSN	ENSG00000165917|ENST00000298854|RAPSN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.76080322265625	2	498.243264	994.471974	-1.2377	-0.00061668	0.64904	0.00032338	-0.58867	-0.0002933	498.2430803035467	66.03	0.63068	62.544	62.276	62.907	-3.4854					19	12	2	0	0	0	0.027462	1	4781	4781		39.253	14.749	1	39954			54934	6613	45352	45391	59998	59998					-0.025482973501880224
SRGEEVYVKK	10	Unmodified	_SRGEEVYVKK_					0	0	0		ENSG00000066056|ENST00000372476|TIE1;ENST00000473014.1_1_1:43783488-43785201:+|nuORF	ENSG00000066056|ENST00000372476|TIE1	ENSG00000066056|ENST00000372476|TIE1	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8231811523438	2	597.827495	1193.64044	-4.1469	-0.0024791	-1.8106	-0.0010824	-5.9575	-0.0035616	597.8262965638429	152.69	0.95377	152.46	152.23	153.19	-0.22696					55	20	4	0	0	0	0.81992	1	15578	15578		16.473	0	1	133350			54935	1342	45353	45392	59999	59999					0.05136184563457391
SRGERSYDI	9	Unmodified	_SRGERSYDI_					0	0	0		tr|A0A7D6VRK5|A0A7D6VRK5_9CLOTATP-dependentClpproteaseproteolyticsubunitOS=ClostridiumintestinaleOX=36845GN=clpPPE=3SV=1	tr|A0A7D6VRK5|A0A7D6VRK5_9CLOTATP-dependentClpproteaseproteolyticsubunitOS=ClostridiumintestinaleOX=36845GN=clpPPE=3SV=1	tr|A0A7D6VRK5|A0A7D6VRK5_9CLOTATP-dependentClpproteaseproteolyticsubunitOS=ClostridiumintestinaleOX=36845GN=clpPPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.8099975585938	2	541.764894	1081.51524	0.36453	0.00019749	-0.81023	-0.00043895	-0.4457	-0.00024146	541.7647701264493	162.5	0.25212	162.5	162.38	162.63	0					10	6	2	0	0	0	0.027462	1	19063	19063		14.865	0	1	327940			54936	34939	45354	45393	60000	60000					-0.022261075729147706
SRGFPHLEL	9	Unmodified	_SRGFPHLEL_					0	0	0			REV__chr14:94110797-94111606|362|13.56|0.71|4.25|+|2|IFI27,None|1	REV__chr14:94110797-94111606|362|13.56|0.71|4.25|+|2|IFI27,None|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.6485595703125	2	528.285266	1054.55598	1.3439	0.00070996	-1.2609	-0.0006661	0.08303	4.3863E-05	528.2808433357181	105.79	0.74499	105.79	105.57	106.32	0					23	16	3	0	0	0	0.027447	1	11914	11914		47.657	10.498	1	169450	+		54937	15916	45355	45394	60001	60001					0.030882785373478328
SRGGFLGEGP	10	Unmodified	_SRGGFLGEGP_					0	0	0		ENSG00000145217|ENST00000398516|SLC26A1	ENSG00000145217|ENST00000398516|SLC26A1	ENSG00000145217|ENST00000398516|SLC26A1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.7621765136719	2	488.745973	975.477394	0.34287	0.00016758	0.088429	4.3219E-05	0.4313	0.0002108	488.7456194289503	59.469	1.0819	56.077	55.755	56.837	-3.392					61	21	4	0	0	0	0.026635	1	3956	3956		47.657	19.775	1	264400			54938	5209	45356	45395	60002	60002					-0.01132573767699796
SRGGFLGEGP	10	Unmodified	_SRGGFLGEGP_					0	0	0		ENSG00000145217|ENST00000398516|SLC26A1	ENSG00000145217|ENST00000398516|SLC26A1	ENSG00000145217|ENST00000398516|SLC26A1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	488.745973	975.477394	-0.013279	-6.4898E-06	0.71539	0.00034964	0.70211	0.00034315	488.7459669810302	58.99	0.77485	56.21	55.888	56.662	-2.7801	0.066493	0.00039541	NaN	47.657	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41948			54939	5209	45356	45395							-0.01132573767699796
SRGGLGPGLI	10	Unmodified	_SRGGLGPGLI_					0	0	0		nc|ENSG00000126259|Q6UWL6-3|KIRREL2;nc|ENSG00000126259|Q6UWL6-2|KIRREL2;ENSG00000126259|ENST00000360202|KIRREL2	nc|ENSG00000126259|Q6UWL6-3|KIRREL2	nc|ENSG00000126259|Q6UWL6-3|KIRREL2	MULTI-MSMS	OvCa99_classI_Rep5	1	463.77734375	2	463.774534	925.534515	2.4664	0.0011439	4.2949	0.0019919	6.7613	0.0031357	463.77635692737135	120.99	1.4349	120.99	120.74	122.17	0					70	31	3	0	0	0	0.62299	1	13971	13971		39.253	0	1	1726200			54940	3777	45357	45396	60003	60003					0.0687689350867231
SRGHNVLDW	9	Unmodified	_SRGHNVLDW_					0	0	0			REV__ENST00000532410.1_1_11:43905559-43940676:+|nuORF	REV__ENST00000532410.1_1_11:43905559-43940676:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.7857055664062	2	542.270147	1082.52574	-0.97933	-0.00053106	-0.71437	-0.00038738	-1.6937	-0.00091844	542.2693009679242	91.271	0.35896	88.728	88.553	88.912	-2.5425					10	6	2	0	0	0	0.027295	1	7909	7909		84.916	35.474	1	20880	+		54941	27236	45358	45397	60004	60004					-0.012220801278090221
SRGKEETIT	9	Unmodified	_SRGKEETIT_					0	0	0			REV__ENSG00000197442|ENST00000359015|MAP3K5	REV__ENSG00000197442|ENST00000359015|MAP3K5	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.7814025878906	2	510.769645	1019.52474	2.6347	0.0013457	3.2262	0.0016478	5.8608	0.0029935	510.77113220052513	75.152	0.44576	75.152	74.962	75.407	0					27	10	3	0	0	0	0.027462	1	7490	7490		36.447	17.343	1	2161400	+		54942	22925	45359	45398	60005	60005					0.01575660712626359
SRGKKNIGKK	10	Unmodified	_SRGKKNIGKK_					0	0	0			REV__ENST00000532414.2_1_1:156043673-156043931:-|nuORF	REV__ENST00000532414.2_1_1:156043673-156043931:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.791259765625	2	558.354014	1114.69348	1.5284	0.00085336	4.3085	0.0024057	5.8369	0.003259	558.356461175557	109.59	0.44385	109.59	109.33	109.77	0					16	9	2	0	0	0	0.026782	1	12424	12424		37.812	15.852	1	92425	+		54943	27237	45360	45399	60006	60006					0.1407160713677058
SRGKVWLI	8	Unmodified	_SRGKVWLI_					0	0	0		ENST00000498747.1_1_10:12279256-12292333:+|nuORF;ENSG00000151465|ENST00000281141|CDC123	ENST00000498747.1_1_10:12279256-12292333:+|nuORF	ENST00000498747.1_1_10:12279256-12292333:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.79876708984375	2	479.795269	957.575986	-0.24413	-0.00011713	-3.039	-0.0014581	-3.2831	-0.0015752	479.7941274027501	48.829	0.57039	48.829	48.675	49.245	0					22	12	3	0	0	0	0.028476	1	3613	3613		26.796	0	1	687590			54944	5554	45361	45400	60007	60007					0.09550074267997388
SRGLDIPTV	9	Unmodified	_SRGLDIPTV_					0	0	0		ENSG00000105671|ENST00000247003|DDX49;ENST00000601772.1_1_19:19035054-19035967:+|nuORF	ENSG00000105671|ENST00000247003|DDX49	ENSG00000105671|ENST00000247003|DDX49	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.79876708984375	2	479.271824	956.529095	-0.20009	-9.5896E-05	-0.089313	-4.2805E-05	-0.2894	-0.0001387	479.2716607584013	48.994	0.26801	48.994	48.807	49.075	0					9	5	2	0	0	0	0.027462	1	3613	3613		42.396	0	1	68301			54945	2487	45362	45401	60008	60008					0.049091699261907706
SRGLGNILPA	10	Unmodified	_SRGLGNILPA_					0	0	0			REV__ENST00000482240.5_1_X:133941571-133943400:+|nuORF	REV__ENST00000482240.5_1_X:133941571-133943400:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.73529052734375	2	499.293091	996.571629	2.2517	0.0011243	1.0969	0.00054767	3.3486	0.0016719	499.2936940766132	76.234	0.41043	76.234	75.913	76.324	0					14	9	2	0	0	0	0.026522	1	7643	7643		75.043	14.749	1	133230	+		54946	26497	45363	45402	60009	60009					0.07320565054430972
SRGLGNILPA	10	Unmodified	_SRGLGNILPA_					0	0	0			REV__ENST00000482240.5_1_X:133941571-133943400:+|nuORF	REV__ENST00000482240.5_1_X:133941571-133943400:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	499.293091	996.571629	-0.54308	-0.00027115	0.33296	0.00016624	-0.21012	-0.00010491	499.293117040854	78.527	0.84068	76.175	75.949	76.79	-2.3527	-0.029713	-0.00016472	NaN	75.043	31	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149920	+		54947	26497	45363	45402							0.07320565054430972
SRGQGPEPAP	10	Unmodified	_SRGQGPEPAP_					0	0	0		ENST00000476772.5_1_6:43738443-43746274:+|nuORF;nc|ENSG00000112715|P15692-18|VEGFA;nc|ENSG00000112715|P15692-12|VEGFA;nc|ENSG00000112715|P15692-17|VEGFA;nc|ENSG00000112715|P15692-15|VEGFA;nc|ENSG00000112715|P15692-11|VEGFA;nc|ENSG00000112715|P15692-16|VEGFA;ENSG00000112715|ENST00000672860|VEGFA;nc|ENSG00000112715|P15692-14|VEGFA	ENST00000476772.5_1_6:43738443-43746274:+|nuORF	ENST00000476772.5_1_6:43738443-43746274:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.8265380859375	2	498.24888	994.483208	0.0073136	3.644E-06	1.5304	0.00076251	1.5377	0.00076616	498.2514692654497	110.75	0.24738	110.61	110.44	110.68	-0.13961					6	4	2	0	0	0	0.026782	1	10429	10429		30.318	0	1	5266.2			54948	2923	45364	45403	60010	60010					-0.014254752560646011
SRGQLVEDMT	10	Unmodified	_SRGQLVEDMT_					0	0	0		ENST00000483884.1_1_1:210411323-210419944:+|nuORF;ENST00000482421.1_1_1:210411290-210419944:+|nuORF	ENST00000483884.1_1_1:210411323-210419944:+|nuORF	ENST00000483884.1_1_1:210411323-210419944:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.3297729492188	2	568.274238	1134.53392	1.643	0.00093368	-4.3643	-0.0024801	-2.7213	-0.0015464	568.2712757942999	91.201	0.60426	91.201	90.938	91.542	0					21	12	2	0	0	0	0.026968	1	9822	9822		29.17	15.716	1	320520			54949	12571	45365	45404	60011	60011					-0.027963139933717684
SRGQLVEDMT	10	Unmodified	_SRGQLVEDMT_					0	0	0		ENST00000483884.1_1_1:210411323-210419944:+|nuORF;ENST00000482421.1_1_1:210411290-210419944:+|nuORF	ENST00000483884.1_1_1:210411323-210419944:+|nuORF	ENST00000483884.1_1_1:210411323-210419944:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	568.274238	1134.53392	-1.4852	-0.000844	-0.90617	-0.00051495	-2.3914	-0.001359	568.2735613881331	93.209	1.5993	91.247	90.744	92.343	-1.9617	-0.02688	0.0015061	NaN	22.58	43	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76875			54950	12571	45365	45404							-0.027963139933717684
SRGQWARRRRR	11	Unmodified	_SRGQWARRRRR_					0	0	0		ENSG00000105298|ENST00000429344|CACTIN;nc|ENSG00000105298|Q8WUQ7-2|CACTIN	ENSG00000105298|ENST00000429344|CACTIN	ENSG00000105298|ENST00000429344|CACTIN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.26763916015625	3	495.622519	1483.84573	-0.19265	-9.5482E-05	2.8805	0.0014277	2.6879	0.0013322	495.6239655130694	58.606	0.70279	55.214	54.952	55.655	-3.392					36	13	4	0	0	0	0.026482	1	3909	3909		4.8861	3.5642	1	114530			54951	2440	45366	45405	60012	60012					0.12315820656908727
SRGQWARRRRR	11	Unmodified	_SRGQWARRRRR_					0	0	0		ENSG00000105298|ENST00000429344|CACTIN;nc|ENSG00000105298|Q8WUQ7-2|CACTIN	ENSG00000105298|ENST00000429344|CACTIN	ENSG00000105298|ENST00000429344|CACTIN	MULTI-MATCH	OvCa9_classI_Rep2	2		3	495.622519	1483.84573	-0.36027	-0.00017856	2.5693	0.0012734	2.209	0.0010948	495.6241554991564	57.906	1.0533	55.114	54.773	55.826	-2.792	-0.049654	-0.00036817	NaN	2.534	64	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100570			54952	2440	45366	45405							0.12315820656908727
SRGRPRGRARL	11	Unmodified	_SRGRPRGRARL_					0	0	0		ENST00000293328.7_1_17:40384151-40428306:-|nuORF	ENST00000293328.7_1_17:40384151-40428306:-|nuORF	ENST00000293328.7_1_17:40384151-40428306:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	427.9295654296875	3	427.928949	1280.76502	1.7119	0.00073257	0.31046	0.00013286	2.0224	0.00086543	427.9290217090034	65.493	1.4717	62.547	62.198	63.67	-2.9459					92	28	4	0	0	0	0.72064	1	2665	2665		25.892	8.725	1	349590			54953	10107	45367	45406	60013	60013					0.13586539614038884
SRGVFKKKSI	10	Unmodified	_SRGVFKKKSI_					0	0	0			REV__ENSG00000205667|ENST00000381130|ARSH	REV__ENSG00000205667|ENST00000381130|ARSH	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.312255859375	2	575.358765	1148.70298	-0.83456	-0.00048017	1.551	0.00089235	0.71639	0.00041218	575.3590621948118	99.084	0.40662	97.399	97.217	97.624	-1.685					11	7	2	0	0	0	0.02658	1	6640	6640		64.207	7.4862	1	20809	+		54954	23221	45368	45407	60014	60014					0.1345737542230836
SRGVNFGLV	9	Unmodified	_SRGVNFGLV_					0	0	0			REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	REV__nc|ENSG00000163625|Q8IZQ1-2|WDFY3	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.2837219238281	2	474.766709	947.518865	-0.13998	-6.6457E-05	-0.44731	-0.00021237	-0.58729	-0.00027883	474.76629207550906	53.096	0.73772	53.096	52.61	53.347	0					26	16	3	0	0	0	0.027418	1	4201	4201		32.812	0	1	355540	+		54955	20863	45369	45408	60015	60015					0.04300606991625955
SRGVTLSSCFV	11	Unmodified	_SRGVTLSSCFV_					0	0	0		ENST00000412918.1_1_1:226862643-226862754:-|nuORF	ENST00000412918.1_1_1:226862643-226862754:-|nuORF	ENST00000412918.1_1_1:226862643-226862754:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	578.2883911132812	2	578.294973	1154.57539	-5.4887	-0.0031741	-3.6529	-0.0021124	-9.1416	-0.0052866	578.2927598597663	159.22	4.1126	158.99	158.53	162.64	-0.22697					262	82	5	0	0	0	0.69455	1	16429	16429		31.53	2.3803	1	1073400			54956	11556	45370	45409	60016	60016					0.004288667659693601
SRHCQPCTI	9	Unmodified	_SRHCQPCTI_					0	0	0			REV__TRIM9|p.L284Tfs*73|1|0.08|ENSG00000100505|chr14:51025333-51025334|-/GAAGAAAAGAAGAGAAAACTGTGGCCTGT|frameshift_variant	REV__TRIM9|p.L284Tfs*73|1|0.08|ENSG00000100505|chr14:51025333-51025334|-/GAAGAAAAGAAGAGAAAACTGTGGCCTGT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.2822265625	2	522.739311	1043.46407	-0.50692	-0.00026499	-3.1317	-0.0016371	-3.6386	-0.0019021	522.7373534031136	73.007	0.5535	73.007	72.764	73.317	0					13	9	2	0	0	0	0.027461	1	7186	7186		32.812	0	1	113860	+		54957	17425	45371	45410	60017	60017					-0.055924711429724994
SRHEKVNGL	9	Unmodified	_SRHEKVNGL_					0	0	0		ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	MULTI-MSMS	OvCa99_classI_Rep5	1	520.2852783203125	2	520.285797	1038.55704	-1.1015	-0.00057308	1.0899	0.00056707	-0.011561	-6.0152E-06	520.2862100089197	28.863	0.49867	28.863	28.739	29.237	0					14	9	3	0	0	0	0.42676	1	986	986		49.442	1.7842	1	126660			54958	5457	45372	45411	60018	60018					0.03930492906283689
SRHKHQAL	8	Unmodified	_SRHKHQAL_					0	0	0			REV__MNAT1|p.D203H|1|0.19|ENSG00000020426|chr14:60818767-60818767|G/C|missense_variant	REV__MNAT1|p.D203H|1|0.19|ENSG00000020426|chr14:60818767-60818767|G/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.7696228027344	2	488.7754	975.536246	1.6897	0.00082587	3.3195	0.0016225	5.0091	0.0024483	488.7768305090661	77.734	0.38028	77.734	77.588	77.968	0					13	8	2	0	0	0	0.028476	1	7877	7877		30.504	0	1	201500	+		54959	28675	45373	45412	60019	60019					0.04749947317282022
SRHKHQAL	8	Unmodified	_SRHKHQAL_					0	0	0			REV__MNAT1|p.D203H|1|0.19|ENSG00000020426|chr14:60818767-60818767|G/C|missense_variant	REV__MNAT1|p.D203H|1|0.19|ENSG00000020426|chr14:60818767-60818767|G/C|missense_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	488.7754	975.536246	-0.24123	-0.00011791	4.156	0.0020313	3.9147	0.0019134	488.77693354883945	80.024	0.65317	77.684	77.563	78.217	-2.3399	-0.02479	0.00047706	NaN	16.473	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22431	+		54960	28675	45373	45412							0.04749947317282022
SRHKHQALL	9	Unmodified	_SRHKHQALL_					0	0	0			REV__MNAT1|p.D203H|1|0.19|ENSG00000020426|chr14:60818767-60818767|G/C|missense_variant	REV__MNAT1|p.D203H|1|0.19|ENSG00000020426|chr14:60818767-60818767|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.3174438476562	2	545.317432	1088.62031	-0.51373	-0.00028014	-0.77412	-0.00042214	-1.2878	-0.00070228	545.3169196404446	142.63	4.7541	141.19	139.73	144.49	-1.4427					172	91	2	0	0	0	0.69123	1	14123	14123		20.947	0	1	155190	+		54961	28675	45374	45413	60020	60020					0.07954478414194455
SRHLTQVRDP	10	Unmodified	_SRHLTQVRDP_					0	0	0			REV__ENSG00000176809|ENST00000584306|LRRC37A3	REV__ENSG00000176809|ENST00000584306|LRRC37A3	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.5182800292969	3	403.554666	1207.64217	1.12	0.00045199	-1.0055	-0.00040576	0.11456	4.6232E-05	403.5543509611067	35.543	0.27444	35.543	35.339	35.614	0					9	5	2	0	0	0	0.026931	1	1804	1804		12.433	0	1	49224	+		54962	21963	45375	45414	60021	60021					0.046652383720811486
SRHPTGNSI	9	Unmodified	_SRHPTGNSI_					0	0	0		DENND4C|p.S1184Afs*8|1|0.04|ENSG00000137145|chr9:19346465-19346466|-/GCCA|frameshift_variant;DENND4C|p.S1183Rfs*22|1|0.06|ENSG00000137145|chr9:19346464-19346465|-/GGAGCAGA|frameshift_variant;nc|ENSG00000137145|Q5VZ89-5|DENND4C;nc|ENSG00000137145|Q5VZ89-3|DENND4C;nc|ENSG00000137145|Q5VZ89|DENND4C;ENSG00000137145|ENST00000434457|DENND4C;ENST00000380437.8_1_9:19290781-19335045:+|nuORF;ENST00000494124.2_1_9:19316810-19337609:+|nuORF	DENND4C|p.S1184Afs*8|1|0.04|ENSG00000137145|chr9:19346465-19346466|-/GCCA|frameshift_variant	DENND4C|p.S1184Afs*8|1|0.04|ENSG00000137145|chr9:19346465-19346466|-/GCCA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	484.74859619140625	2	484.749047	967.483542	-0.79635	-0.00038603	1.0534	0.00051066	0.2571	0.00012463	484.74927778185867	28.413	0.3982	28.413	28.24	28.638	0					18	7	4	0	0	0	0.2784	1	931	931		65.465	23.069	1	135270			54963	729	45376	45415	60022	60022					-0.0015005553618721024
SRIAQIAVK	9	Unmodified	_SRIAQIAVK_					0	0	0		tr|A0A7D6VP68|A0A7D6VP68_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_21885PE=3SV=1	tr|A0A7D6VP68|A0A7D6VP68_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_21885PE=3SV=1	tr|A0A7D6VP68|A0A7D6VP68_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_21885PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2492980957031	2	493.311284	984.608014	0.041795	2.0618E-05	-0.74776	-0.00036888	-0.70596	-0.00034826	493.31067264511165	58.16	0.50421	58.16	57.899	58.403	0					25	11	3	0	0	0	0.027462	1	4942	4942		31.53	7.3271	1	1048300			54964	34754	45377	45416	60023	60023					0.11509441951125154
SRICFYNAT	9	Unmodified	_SRICFYNAT_					0	0	0		nc|ENSG00000112414|Q86SQ4-2|ADGRG6;nc|ENSG00000112414|Q86SQ4|ADGRG6;nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENSG00000112414|ENST00000367609|ADGRG6	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.8121948242188	2	537.755484	1073.49641	-0.65032	-0.00034971	3.3066	0.0017781	2.6563	0.0014284	537.7571605129083	41.767	0.17137	41.767	41.637	41.809	0					5	3	2	0	0	0	0.027462	1	2636	2636		47.657	19.775	1	30195			54965	2904	45378	45417	60024	60024					-0.03739360468330233
SRIELAAKI	9	Unmodified	_SRIELAAKI_					0	0	0		tr|A0A7D6ZVP9|A0A7D6ZVP9_9CLOTStageIIIsporulationproteinADOS=ClostridiumintestinaleOX=36845GN=spoIIIADPE=4SV=1	tr|A0A7D6ZVP9|A0A7D6ZVP9_9CLOTStageIIIsporulationproteinADOS=ClostridiumintestinaleOX=36845GN=spoIIIADPE=4SV=1	tr|A0A7D6ZVP9|A0A7D6ZVP9_9CLOTStageIIIsporulationproteinADOS=ClostridiumintestinaleOX=36845GN=spoIIIADPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.7806091308594	2	500.811116	999.60768	0.2114	0.00010587	-0.22206	-0.00011121	-0.010659	-5.3379E-06	500.81074030856826	45.243	0.64629	45.243	44.977	45.624	0					31	14	3	0	0	0	0.027462	1	3098	3098		21.96	0	1	566280			54966	35808	45379	45418	60025	60025					0.10786022231263814
SRIFLIITL	9	Unmodified	_SRIFLIITL_					0	0	0			REV__tr|A0A7D6ZYF3|A0A7D6ZYF3_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_02015PE=3SV=1	REV__tr|A0A7D6ZYF3|A0A7D6ZYF3_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_02015PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.302490234375	2	538.347335	1074.68012	0.37776	0.00020337	-1.4527	-0.00078204	-1.0749	-0.00057867	538.3463670507541	90.468	0.56358	88.387	88.158	88.722	-2.0805					16	10	2	0	0	0	0.027462	1	5635	5635		45.972	0	1	22617	+		54967	32368	45380	45419	60026	60026					0.14576356304860383
SRIHVRRI	8	Unmodified	_SRIHVRRI_					0	0	0		tr|A0A553SGX5|A0A553SGX5_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_11760PE=4SV=1	tr|A0A553SGX5|A0A553SGX5_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_11760PE=4SV=1	tr|A0A553SGX5|A0A553SGX5_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_11760PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.7938232421875	2	518.827966	1035.64138	0.84489	0.00043835	1.788	0.00092768	2.6329	0.001366	518.82900558565	103.16	0.24678	103.16	103.1	103.34	0					8	5	2	0	0	0	0.028476	1	11543	11543		45.952	13.997	1	212830			54968	33205	45381	45420	60027	60027					0.12498488513710981
SRIKGIKRGVI	11	Unmodified	_SRIKGIKRGVI_					0	0	0			REV__nc|ENSG00000183530|Q5THK1-2|PRR14L	REV__nc|ENSG00000183530|Q5THK1-2|PRR14L	MULTI-MSMS	OvCa9_classI_Rep2	2	409.6077880859375	3	409.606701	1225.79827	0.6889	0.00028218	2.4344	0.00099713	3.1233	0.0012793	409.60766459120623	104.29	12.102	103.72	103.28	115.38	-0.57639					699	244	5	0	0	0	0.60035	2	9658	9658;10087		44.639	8.1309	1	1628000	+		54969	22367	45382	45421	60028;60029	60028					0.19440728613380998
SRIKGIKRGVI	11	Unmodified	_SRIKGIKRGVI_					0	0	0			REV__nc|ENSG00000183530|Q5THK1-2|PRR14L	REV__nc|ENSG00000183530|Q5THK1-2|PRR14L	MULTI-MSMS	OvCa9_classI_Rep4_	4	409.6089172363281	3	409.606701	1225.79827	0.55097	0.00022568	2.443	0.0010007	2.994	0.0012264	409.60762934156605	108.64	8.1164	106.92	106.42	114.53	-1.7256					461	158	5	0	0	0	0.61375	3	9993	9993;10101;10126		43.419	5.9635	1	863570	+		54970	22367	45382	45421	60030;60031;60032	60030					0.19440728613380998
SRILESVP	8	Unmodified	_SRILESVP_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MSMS	OvCa9_classI_Rep2	2	450.76171875	2	450.761092	899.507631	NaN	NaN	NaN	NaN	NaN	NaN	NaN	29.452	1	26.743	26.243	27.243	-2.7097								0	0	0	0.30129	1	710	710		26.693	2.4902	1		+		54971	28942	45383	45422	60033	60033					0.05385784897475787
SRILPVGLLAE	11	Unmodified	_SRILPVGLLAE_					0	0	0			REV__nc|ENSG00000106003|Q8NES3-2|LFNG	REV__nc|ENSG00000106003|Q8NES3-2|LFNG	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.3307495117188	2	584.358431	1166.70231	1.8142	0.0010602	0.072946	4.2627E-05	1.8872	0.0011028	584.35842229432	95.595	0.24719	95.595	95.538	95.785	0					9	5	2	0	0	0	0.025701	1	10438	10438		29.17	15.033	1	209920	+		54972	17772	45384	45423	60034	60034					0.12562535982624468
SRIMIPLKI	9	Unmodified	_SRIMIPLKI_					0	0	0		ENSG00000184117|ENST00000216121|NIPSNAP1	ENSG00000184117|ENST00000216121|NIPSNAP1	ENSG00000184117|ENST00000216121|NIPSNAP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2985229492188	2	535.841362	1069.66817	1.8899	0.0010127	-1.1082	-0.0005938	0.78171	0.00041887	535.8406478206563	91.365	0.81554	91.365	90.938	91.753	0					32	19	2	0	0	0	0.027462	1	9781	9781		37.159	0	1	972210			54973	8131	45385	45424	60035	60035					0.13612416290015972
SRIQFAPRL	9	Unmodified	_SRIQFAPRL_					0	0	0			REV__ENST00000534215.5_1_11:46383194-46389283:+|nuORF	REV__ENST00000534215.5_1_11:46383194-46389283:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.3212280273438	2	544.322183	1086.62981	-0.85847	-0.00046729	-0.76373	-0.00041571	-1.6222	-0.000883	544.3216611834343	69.818	0.32656	69.818	69.513	69.84	0					12	7	2	0	0	0	0.027411	1	6659	6659		64.207	4.089	1	1636900	+		54974	27264	45386	45425	60036	60036					0.08996246699712174
SRIRGPTK	8	Unmodified	_SRIRGPTK_					0	0	0			REV__ENSG00000099250|ENST00000374867|NRP1	REV__ENSG00000099250|ENST00000374867|NRP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.7456359863281	2	457.780151	913.545748	-0.44309	-0.00020284	0.43061	0.00019712	-0.012478	-5.712E-06	457.7802111900029	36.128	0.50435	36.128	35.892	36.397	0					22	10	3	0	0	0	0.028476	1	1848	1848		17.468	3.3309	1	196230	+		54975	17315	45387	45426	60037	60037					0.08551715602811782
SRITKKIEV	9	Unmodified	_SRITKKIEV_					0	0	0			REV__tr|A0A7D6VVL2|A0A7D6VVL2_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11700PE=3SV=1	REV__tr|A0A7D6VVL2|A0A7D6VVL2_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11700PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3051147460938	2	537.337498	1072.66044	1.3742	0.0007384	3.3405	0.001795	4.7146	0.0025334	537.3393054296031	111.3	0.5363	111.3	111.02	111.56	0					18	11	2	0	0	0	0.027462	1	12643	12643		35.152	17.684	1	96852	+		54976	31723	45388	45427	60038	60038					0.12701980294104942
SRITVEHIS	9	Unmodified	_SRITVEHIS_					0	0	0			REV__ENST00000407597.6_1_X:9431427-9621615:+|nuORF	REV__ENST00000407597.6_1_X:9431427-9621615:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.28173828125	2	521.288005	1040.56146	0.82064	0.00042779	2.4594	0.0012821	3.2801	0.0017099	521.2891341502428	91.143	0.35591	91.143	91.016	91.372	0					14	8	2	0	0	0	0.027441	1	9833	9833		32.812	0	1	431320	+		54977	23730	45389	45428	60039	60039					0.042799573291858906
SRIVRTKV	8	Unmodified	_SRIVRTKV_					0	0	0		ENST00000533975.1_1_11:134119036-134122923:-|nuORF	ENST00000533975.1_1_11:134119036-134122923:-|nuORF	ENST00000533975.1_1_11:134119036-134122923:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.80010986328125	2	479.811451	957.608348	-0.52948	-0.00025405	3.2254	0.0015476	2.6959	0.0012935	479.81407876560417	39.583	0.51064	39.583	39.287	39.798	0					17	11	3	0	0	0	0.028476	1	2320	2320		108.09	17.311	1	277760			54978	13348	45390	45429	60040	60040					0.12784861670991177
SRIWPLYLRFL	11	Unmodified	_SRIWPLYLRFL_					0	0	0		ENSG00000076924|ENST00000358368|XAB2;ENST00000595288.5_1_19:7690973-7692503:-|nuORF	ENSG00000076924|ENST00000358368|XAB2	ENSG00000076924|ENST00000358368|XAB2	MULTI-SECPEP	OvCa9_classI_Rep3	3	488.2791442871094	3	488.62224	1462.84489	-0.078724	-3.8466E-05	3.7378	0.0018264	3.659	0.0017879	488.62402939316246	104.2	0.26098	102.77	102.6	102.86	-1.4347					8	4	2	0	0	0	0.026302	1	7256	7256		12.433	2.3289	1	9519.8			54979	1559	45391	45430	60041	60041					0.13198168444637304
SRIYWCIK	8	Unmodified	_SRIYWCIK_					0	0	0		ENST00000370544.9_1_1:87810582-87810669:+|nuORF	ENST00000370544.9_1_1:87810582-87810669:+|nuORF	ENST00000370544.9_1_1:87810582-87810669:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.8482666015625	2	534.786587	1067.55862	-1.3832	-0.00073973	3.3912	0.0018136	2.008	0.0010738	534.7883662899244	46.827	0.54562	44.117	43.943	44.489	-2.7097					17	10	2	0	0	0	0.028476	1	2797	2797		24.203	4.8428	1	25502			54980	10931	45392	45431	60042	60042					0.02754410670672769
SRKAKVIAYI	10	Unmodified	_SRKAKVIAYI_					0	0	0		tr|A0A7D6VMV7|A0A7D6VMV7_9CLOTValine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=valSPE=3SV=1	tr|A0A7D6VMV7|A0A7D6VMV7_9CLOTValine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=valSPE=3SV=1	tr|A0A7D6VMV7|A0A7D6VMV7_9CLOTValine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=valSPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	574.8644409179688	2	574.861141	1147.70773	2.4002	0.0013798	3.5287	0.0020285	5.9289	0.0034083	574.8630491034119	96.11	1.0969	96.11	95.826	96.923	0					60	25	4	0	0	0	0.59317	1	10508	10508		42.864	2.0861	1	2329600			54981	34671	45393	45432	60043	60043					0.13978259565078588
SRKDPALPS	9	Unmodified	_SRKDPALPS_					0	0	0		ENST00000427321.1_1_1:45189458-45189554:+|nuORF	ENST00000427321.1_1_1:45189458-45189554:+|nuORF	ENST00000427321.1_1_1:45189458-45189554:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.767822265625	2	485.769448	969.524344	-0.73189	-0.00035553	0.64078	0.00031127	-0.09111	-4.4258E-05	485.76961444578995	69.754	0.82716	66.273	65.96	66.787	-3.4812					32	16	2	0	0	0	0.027462	1	5243	5243		32.812	0	1	261400			54982	11753	45394	45433	60044	60044					0.03836285783427229
SRKESYSIY	9	Unmodified	_SRKESYSIY_					0	0	0		ENSG00000276410|ENST00000615966|H2BC3;ENSG00000274641|ENST00000616182|H2BC17;ENSG00000184678|ENST00000369155|H2BC21;ENSG00000124635|ENST00000339812|H2BC11;nc|ENSG00000220323|Q6DRA6|H2BC19P;nc|ENSG00000261716|Q6DN03|H2BC20P	ENSG00000276410|ENST00000615966|H2BC3	ENSG00000276410|ENST00000615966|H2BC3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.3135375976562	2	566.785296	1131.55604	1.0672	0.0006049	2.0639	0.0011698	3.1311	0.0017747	566.7861278854406	115.49	0.79125	114.09	113.77	114.56	-1.3977					23	15	2	0	0	0	0.027462	1	10761	10761		32.812	0	1	31887			54983	3666	45395	45434	60045	60045					-0.004477662532735849
SRKGRHTL	8	Unmodified	_SRKGRHTL_					0	0	0		nc|ENSG00000197177|Q86SQ6-1|ADGRA1;ENSG00000197177|ENST00000392607|ADGRA1	nc|ENSG00000197177|Q86SQ6-1|ADGRA1	nc|ENSG00000197177|Q86SQ6-1|ADGRA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.2725524902344	2	477.783225	953.551896	1.4527	0.00069408	-4.2858	-0.0020477	-2.8331	-0.0013536	477.78113150365124	74.696	0.51572	74.696	74.405	74.92	0					15	12	2	0	0	0	0.028476	1	7398	7398		14.865	11.181	1	168630			54984	15248	45396	45435	60046	60046					0.07326233834317009
SRKHRLPP	8	Unmodified	_SRKHRLPP_					0	0	0			REV__ENST00000493307.1_1_7:150020428-150023055:+|nuORF	REV__ENST00000493307.1_1_7:150020428-150023055:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	494.8042907714844	2	495.801417	989.588282	-1.29	-0.00063957	3.3019	0.0016371	2.0119	0.00099753	495.8029505336737	63.304	1.2588	60.56	60.32	61.579	-2.7444					34	23	2	0	0	0	0.028476	1	4763	4763		31.955	1.4512	1	89608	+		54985	26703	45397	45436	60047	60047					0.09307110731037938
SRKHRLPP	8	Unmodified	_SRKHRLPP_					0	0	0			REV__ENST00000493307.1_1_7:150020428-150023055:+|nuORF	REV__ENST00000493307.1_1_7:150020428-150023055:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	495.801417	989.588282	0.17688	8.77E-05	2.206	0.0010937	2.3829	0.0011814	495.80236697289166	64.317	0.78012	60.842	60.588	61.368	-3.475	0.14141	-0.00074232	NaN	24.203	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100160	+		54986	26703	45397	45436							0.09307110731037938
SRKKRFEL	8	Unmodified	_SRKKRFEL_					0	0	0			REV__nc|ENSG00000290184|Q9BZS1-4|FOXP3	REV__nc|ENSG00000290184|Q9BZS1-4|FOXP3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.8005981445312	2	532.322183	1062.62981	-1.7699	-0.00094218	3.9021	0.0020772	2.1322	0.001135	532.3239692378271	117.72	1.3144	116.38	116.1	117.42	-1.3444					49	24	3	0	0	0	0.028476	1	11085	11085		49.442	0	1	45193	+		54987	16679	45398	45437	60048	60048					0.101002466996988
SRKLGPTP	8	Unmodified	_SRKLGPTP_					0	0	0			REV__nc|ENSG00000176927|A4FU69-6|EFCAB5	REV__nc|ENSG00000176927|A4FU69-6|EFCAB5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	428.2698669433594	2	428.255977	854.497401	0.65781	0.00028171	0.94775	0.00040588	1.6056	0.00068759	428.25635363116606	57.101	0.30528	53.756	53.527	53.832	-3.3449					7	5	2	0	0	0	0.028476	1	3697	3697		45.952	0	1	24435	+		54988	29021	45399	45438	60049	60049					0.0643322196290228
SRKLIVQPN	9	Unmodified	_SRKLIVQPN_					0	0	0		ENSG00000254986|ENST00000531863|DPP3;nc|ENSG00000254986|Q9NY33-4|DPP3;nc|ENSG00000254986|Q9NY33-2|DPP3	ENSG00000254986|ENST00000531863|DPP3	ENSG00000254986|ENST00000531863|DPP3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.2828979492188	2	527.822015	1053.62948	-0.93864	-0.00049543	1.0736	0.00056665	0.13493	7.1219E-05	527.8225294174949	77.659	0.67882	74.842	74.584	75.263	-2.8165					26	13	3	0	0	0	0.027462	1	6220	6220		14.865	0	1	77320			54989	9450	45400	45439	60050	60050					0.10480826979846825
SRKLKSLTK	9	Unmodified	_SRKLKSLTK_					0	0	0			REV__ENSG00000126464|ENST00000418929|PRR12	REV__ENSG00000126464|ENST00000418929|PRR12	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.2972412109375	2	530.84549	1059.67643	2.0513	0.0010889	3.4054	0.0018077	5.4567	0.0028967	530.847531094056	82.844	0.46935	82.844	82.609	83.078	0					16	10	2	0	0	0	0.027462	1	8596	8596		36.447	2.5251	1	304830	+		54990	18784	45401	45440	60051	60051					0.148976865309578
SRKLLPHKGLI	11	Unmodified	_SRKLLPHKGLI_					0	0	0			REV__ENST00000398898.6_1_3:49155182-49156625:-|nuORF	REV__ENST00000398898.6_1_3:49155182-49156625:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	421.91668701171875	3	421.274952	1260.80303	-0.56409	-0.00023764	1.1306	0.00047631	0.56656	0.00023868	421.2753152199698	20.864	0.80775	19.526	19.26	20.068	-1.3386					25	16	2	0	0	0	0.026174	1	86	86		8.4073	0	1	24603	+		54991	25383	45402	45441	60052	60052					0.18305612756148548
SRKLPKRH	8	Unmodified	_SRKLPKRH_					0	0	0			REV__ENSG00000140743|ENST00000268383|CDR2	REV__ENSG00000140743|ENST00000268383|CDR2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.259765625	2	511.322517	1020.63048	-0.61657	-0.00031527	2.7349	0.0013984	2.1183	0.0010831	511.3238066132597	55.92	1.1118	52.625	52.16	53.272	-3.2944					33	21	2	0	0	0	0.028476	1	3614	3614		45.952	10.334	1	35404	+		54992	19698	45403	45442	60053	60053					0.12099086139414794
SRKLPKRH	8	Unmodified	_SRKLPKRH_					0	0	0			REV__ENSG00000140743|ENST00000268383|CDR2	REV__ENSG00000140743|ENST00000268383|CDR2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	511.322517	1020.63048	-1.0163	-0.00051965	3.4535	0.0017659	2.4373	0.0012462	511.32419084219407	55.424	0.99282	52.61	52.222	53.215	-2.8139	-0.0075017	0.00039787	NaN	37.159	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16687	+		54993	19698	45403	45442							0.12099086139414794
SRKLRNTDQLR	11	Unmodified	_SRKLRNTDQLR_					0	0	0			REV__ENSG00000184545|ENST00000397374|DUSP8	REV__ENSG00000184545|ENST00000397374|DUSP8	MULTI-MSMS	OvCa9_classI_Rep2	2	462.93682861328125	3	462.935658	1385.78514	0.079191	3.666E-05	1.9883	0.00092044	2.0675	0.0009571	462.9367014144655	44.408	4.3763	41.698	41.303	45.679	-2.7097					263	87	6	0	0	0	0.68299	1	2541	2541		35.496	2.8799	1	4456400	+		54994	22437	45404	45443	60054	60054					0.1076824576330182
SRKMKLYRKRE	11	Unmodified	_SRKMKLYRKRE_					0	0	0		ENST00000393667.7_1_3:121448147-121448746:-|nuORF	ENST00000393667.7_1_3:121448147-121448746:-|nuORF	ENST00000393667.7_1_3:121448147-121448746:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.9450988769531	3	498.961038	1493.86129	1.6901	0.00084329	4.4034	0.0021971	6.0935	0.0030404	498.96227652309204	78.787	0.32721	78.787	78.583	78.911	0					11	7	2	0	0	0	0.026132	1	7982	7982		10.998	0	1	280400			54995	11253	45405	45444	60055	60055					0.13410926339088292
SRKNGCVCRRG	11	Unmodified	_SRKNGCVCRRG_					0	0	0			REV__ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|8.709205843380579|0.1449238599365492|5.91|406.0|6|1|sense	REV__ERV3-16A3_I-int_dup2611|chr6:29793128-29793966:+|8.709205843380579|0.1449238599365492|5.91|406.0|6|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	618.339599609375	2	618.31404	1234.61353	2.3884	0.0014768	-3.1405	-0.0019418	-0.75209	-0.00046503	618.3136303591945	116.21	0.45777	116.21	115.96	116.42	0					18	9	3	0	0	0	0.025656	1	13313	13313		40.058	3.6114	1	97124	+		54996	28117	45406	45445	60056	60056					0.0056047419964215806
SRKQGIVV	8	Unmodified	_SRKQGIVV_					0	0	0			REV__ENST00000433223.2_9:43400186-43400471:+|nuORF	REV__ENST00000433223.2_9:43400186-43400471:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	444.2583923339844	2	443.777077	885.5396	0.8573	0.00038045	-1.1038	-0.00048986	-0.24653	-0.00010941	443.77659556352637	56.253	1.4372	53.449	52.928	54.366	-2.804					48	28	2	0	0	0	0.028476	1	4057	4057		29.15	3.6994	1	50299	+		54997	25745	45407	45446	60057	60057					0.09225197371290506
SRKQQEVVQI	10	Unmodified	_SRKQQEVVQI_					0	0	0		ENSG00000163013|ENST00000520530|FBXO41	ENSG00000163013|ENST00000520530|FBXO41	ENSG00000163013|ENST00000520530|FBXO41	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.22454833984375	3	405.566571	1213.67788	0.88451	0.00035873	2.6735	0.0010843	3.558	0.001443	405.90186793343565	33.507	0.24792	33.507	33.384	33.632	0					5	4	2	0	0	0	0.02678	1	1552	1552		51.528	13.716	1	8120.8			54998	6255	45408	45447	60058	60058					0.07959275829102808
SRKQRQPAR	9	Unmodified	_SRKQRQPAR_					0	0	0		ENSG00000119574|ENST00000594051|ZBTB45	ENSG00000119574|ENST00000594051|ZBTB45	ENSG00000119574|ENST00000594051|ZBTB45	MULTI-MSMS	OvCa9_classI_Rep2	2	563.8323974609375	2	563.831237	1125.64792	-1.9116	-0.0010778	4.2628	0.0024035	2.3513	0.0013257	563.8333911009685	37.438	0.88556	34.728	34.534	35.419	-2.7097					37	17	4	0	0	0	0.3076	1	1687	1687		62.107	19.243	1	116140			54999	3371	45409	45448	60059	60059					0.09012381674415337
SRKRDTPAT	9	Unmodified	_SRKRDTPAT_					0	0	0			REV__ENSG00000270806|ENST00000605587|C17orf50	REV__ENSG00000270806|ENST00000605587|C17orf50	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.301025390625	2	516.283254	1030.55196	2.3052	0.0011901	2.0907	0.0010794	4.3958	0.0022695	516.2842569369354	99.439	0.45745	99.439	99.195	99.652	0					19	10	2	0	0	0	0.027462	1	11016	11016		31.53	4.8369	1	1166600	+		55000	23607	45410	45449	60060	60060					0.03790189043661485
SRKSFVYLL	9	Unmodified	_SRKSFVYLL_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.2962036132812	2	556.826766	1111.63898	-0.45221	-0.0002518	-4.2419	-0.002362	-4.6941	-0.0026138	556.8243750889244	28.563	0.24903	28.563	28.439	28.688	0					6	4	2	0	0	0	0.027462	1	937	937		30.504	4.9296	1	24999	+		55001	17152	45411	45450	60061	60061					0.08762595265397977
SRLADRIR	8	Unmodified	_SRLADRIR_					0	0	0			REV__ENST00000537638.6_1_12:57905855-57911076:+|nuORF	REV__ENST00000537638.6_1_12:57905855-57911076:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2492980957031	2	493.796332	985.578111	0.096613	4.7707E-05	2.2184	0.0010954	2.315	0.0011431	493.79737383410867	57.977	0.67113	57.977	57.732	58.403	0					19	15	2	0	0	0	0.028476	1	4942	4942		42.396	19.354	1	305660	+		55002	21245	45412	45451	60062	60062					0.08474503005811584
SRLAEFERA	9	Unmodified	_SRLAEFERA_					0	0	0			REV__ENST00000605837.1_1_1:226314885-226315044:+|nuORF	REV__ENST00000605837.1_1_1:226314885-226315044:+|nuORF	MSMS	OvCa9_classI_Rep2	2	539.7879028320312	2	539.78563	1077.55671	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.152	1	94.124	93.624	94.624	-1.0281								0	0	0	0.1712	1	8543	8543		47.96	1.9873	1		+		55003	23359	45413	45452	60063	60063					0.02103073186435722
SRLAGLPASH	10	Unmodified	_SRLAGLPASH_					0	0	0		PCDHGA5|p.V735L|1|0.06|ENSG00000253485|chr5:141366533-141366533|G/T|missense_variant	PCDHGA5|p.V735L|1|0.06|ENSG00000253485|chr5:141366533-141366533|G/T|missense_variant	PCDHGA5|p.V735L|1|0.06|ENSG00000253485|chr5:141366533-141366533|G/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.3233337402344	2	504.78289	1007.55123	-0.91036	-0.00045953	-4.4855	-0.0022642	-5.3958	-0.0027237	504.78004777653456	105.04	0.19518	104.61	104.46	104.65	-0.43642					5	3	2	0	0	0	0.026681	1	9730	9730		36.447	10.873	1	4729.9			55004	15479	45414	45453	60064	60064					0.047753943946077015
SRLAGLPASH	10	Unmodified	_SRLAGLPASH_					0	0	0		PCDHGA5|p.V735L|1|0.06|ENSG00000253485|chr5:141366533-141366533|G/T|missense_variant	PCDHGA5|p.V735L|1|0.06|ENSG00000253485|chr5:141366533-141366533|G/T|missense_variant	PCDHGA5|p.V735L|1|0.06|ENSG00000253485|chr5:141366533-141366533|G/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.3233337402344	2	504.78289	1007.55123	-0.94882	-0.00047895	2.5307	0.0012774	1.5818	0.00079848	505.283462384125	104.89	0.29498	104.32	104.07	104.36	-0.57639					7	5	2	0	0	0	0.026681	1	9730	9730		36.447	10.873	1	14978			55005	15479	45414	45453	60065	60065					0.047753943946077015
SRLAPLLLL	9	Unmodified	_SRLAPLLLL_					0	0	0			REV__ENSG00000112333|ENST00000368986|NR2E1	REV__ENSG00000112333|ENST00000368986|NR2E1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.333740234375	2	498.334227	994.653902	0.034655	1.727E-05	-0.51496	-0.00025662	-0.48031	-0.00023935	498.3339335091273	123.54	3.2541	123.31	122.99	126.25	-0.23193					175	65	5	0	0	0	0.13482	4	11998	11976;11998;12046;12064		87.754	10.324	1	3004600	+		55006	18094	45415	45454	60066;60067;60068;60069	60067					0.15636087133384535
SRLAPLLLL	9	Unmodified	_SRLAPLLLL_					0	0	0			REV__ENSG00000112333|ENST00000368986|NR2E1	REV__ENSG00000112333|ENST00000368986|NR2E1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.33349609375	2	498.334227	994.653902	-0.31291	-0.00015594	0.085793	4.2754E-05	-0.22712	-0.00011318	498.334174042398	135.29	1.7167	135.06	134.69	136.4	-0.22696					83	34	4	0	0	0	0.22961	4	13409	13409;13415;13421;13507		71.296	5.4925	1	281670	+		55007	18094	45415	45454	60070;60071;60072;60073	60070					0.15636087133384535
SRLAPLLLL	9	Unmodified	_SRLAPLLLL_					0	0	0			REV__ENSG00000112333|ENST00000368986|NR2E1	REV__ENSG00000112333|ENST00000368986|NR2E1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3331298828125	2	498.334227	994.653902	1.2643	0.00063007	-1.8659	-0.00092985	-0.60157	-0.00029978	498.3332884380841	124.71	3.4398	123.66	123.27	126.71	-1.0519					179	65	5	0	0	0	0.27001	4	9792	9670;9718;9748;9792		66.429	15.094	1	3929400	+		55008	18094	45415	45454	60074;60075;60076;60077	60077					0.15636087133384535
SRLAPLLLL	9	Unmodified	_SRLAPLLLL_					0	0	0			REV__ENSG00000112333|ENST00000368986|NR2E1	REV__ENSG00000112333|ENST00000368986|NR2E1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3343811035156	2	498.334227	994.653902	-1.4326	-0.00071391	1.262	0.00062888	-0.17064	-8.5035E-05	498.3347342059933	136.81	1.8563	135.72	135.27	137.12	-1.0858					84	37	3	0	0	0	0.40667	2	11128	11128;11141		51.335	3.6781	1	104120	+		55009	18094	45415	45454	60078;60079	60078					0.15636087133384535
SRLAPLLLL	9	Unmodified	_SRLAPLLLL_					0	0	0			REV__ENSG00000112333|ENST00000368986|NR2E1	REV__ENSG00000112333|ENST00000368986|NR2E1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3333740234375	2	498.334227	994.653902	3.0095	0.0014997	-3.4235	-0.001706	-0.41398	-0.0002063	498.33243610568087	134.14	2.7147	132.61	132.05	134.76	-1.5257					123	54	4	0	0	0	0.48047	1	13059	13059		44.377	1.981	1	1105000	+		55010	18094	45415	45454	60080	60080					0.15636087133384535
SRLAVQLRDW	10	Unmodified	_SRLAVQLRDW_					0	0	0		nc|ENSG00000167772|Q9BY76-2|ANGPTL4;ANGPTL4|p.D330Efs*46|1|0.08|ENSG00000167772|chr19:8371471-8371472|-/A|frameshift_variant;ENSG00000167772|ENST00000301455|ANGPTL4;nc|ENSG00000167772|Q9BY76-3|ANGPTL4	nc|ENSG00000167772|Q9BY76-2|ANGPTL4	nc|ENSG00000167772|Q9BY76-2|ANGPTL4	MULTI-MSMS	OvCa9_classI_Rep3	3	622.3465576171875	2	622.348929	1242.6833	1.3021	0.00081034	-2.4763	-0.0015411	-1.1742	-0.00073079	622.3472573537882	119.23	1.2864	118.2	117.83	119.12	-1.0271					70	25	4	0	0	0	0.43433	1	9037	9037		63.534	8.8115	1	444560			55011	90	45416	45455	60081	60081					0.07166999411583674
SRLDKPGVA	9	Unmodified	_SRLDKPGVA_					0	0	0			REV__nc|ENSG00000166313|O00213-2|APBB1	REV__nc|ENSG00000166313|O00213-2|APBB1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.28326416015625	2	471.771991	941.529429	0.73968	0.00034896	-2.3285	-0.0010985	-1.5888	-0.00074957	471.7708381808349	78.813	1.0401	76.061	75.522	76.562	-2.7514					25	21	2	0	0	0	0.027462	1	6303	6303		37.159	8.0096	1	212210	+		55012	21175	45417	45456	60082	60082					0.05632589646052111
SRLDLWGF	8	Unmodified	_SRLDLWGF_					0	0	0		ENST00000402010.6_1_11:63676765-63677272:+|nuORF	ENST00000402010.6_1_11:63676765-63677272:+|nuORF	ENST00000402010.6_1_11:63676765-63677272:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.78973388671875	2	497.261259	992.507966	2.4172	0.001202	-0.64312	-0.0003198	1.774	0.00088216	497.2593405459865	91.629	0.29412	91.629	91.459	91.753	0					8	6	3	0	0	0	0.028476	1	9893	9893		52.299	16.681	1	112870			55013	11423	45418	45457	60083	60083					0.011412046173404633
SRLEEIYMN	9	Unmodified	_SRLEEIYMN_					0	0	0			REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	MULTI-MSMS	OvCa99_classI_Rep5	1	577.7805786132812	2	577.779156	1153.54376	1.3982	0.00080785	-1.8039	-0.0010422	-0.40565	-0.00023437	577.7780326459808	119.96	0.53053	119.96	119.7	120.23	0					36	11	4	0	0	0	0.16562	1	13764	13764		82.241	10.363	1	1609800	+		55014	17076	45419	45458	60084	60084					-0.02687125987949912
SRLEEIYMN	9	Unmodified	_SRLEEIYMN_					0	0	0			REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	577.779156	1153.54376	-1.8742	-0.0010829	-0.3698	-0.00021366	-2.244	-0.0012965	578.2804032178335	120.14	0.29582	119.97	119.84	120.14	-0.17138	0.055063	0.0015765	NaN	82.241	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8870.9	+		55015	17076	45419	45458							-0.02687125987949912
SRLEEIYMN	9	Unmodified	_SRLEEIYMN_					0	0	0			REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	577.779156	1153.54376	0.42273	0.00024425	-2.6998	-0.0015599	-2.277	-0.0013156	578.2799967846981	120.9	0.67119	119.88	119.66	120.33	-1.0271	-0.037697	-0.0011159	NaN	82.241	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12061	+		55016	17076	45419	45458							-0.02687125987949912
SRLEEIYMN	9	Unmodified	_SRLEEIYMN_					0	0	0			REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	577.779156	1153.54376	-1.07	-0.00061825	-0.91804	-0.00053043	-1.9881	-0.0011487	577.7779722363673	121.19	0.51868	119.85	119.64	120.16	-1.3479	-0.066999	0.00094299	NaN	82.241	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10574	+		55017	17076	45419	45458							-0.02687125987949912
SRLEESHQL	9	Unmodified	_SRLEESHQL_					0	0	0			REV__nc|ENSG00000164808|Q14159-3|SPIDR	REV__nc|ENSG00000164808|Q14159-3|SPIDR	MULTI-SECPEP	OvCa9_classI_Rep2	2	549.8285522460938	2	549.780544	1097.54654	0.75979	0.00041772	0.37913	0.00020844	1.1389	0.00062615	549.781795662002	80.803	3.2545	79.108	77.347	80.601	-1.6951					121	63	3	0	0	0	0.027137	1	6975	6975		98.629	23.586	1	64010	+		55018	28973	45420	45459	60085	60085					0.0016646546121137362
SRLESILSK	9	Unmodified	_SRLESILSK_					0	0	0		nc|ENSG00000070729|Q14028-4|CNGB1;ENSG00000070729|ENST00000251102|CNGB1;nc|ENSG00000070729|Q14028-2|CNGB1	nc|ENSG00000070729|Q14028-4|CNGB1	nc|ENSG00000070729|Q14028-4|CNGB1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.2941284179688	2	516.806031	1031.59751	-0.89561	-0.00046286	-1.5732	-0.00081305	-2.4688	-0.0012759	516.8053594453883	53.027	0.54336	49.819	49.451	49.995	-3.208					13	10	2	0	0	0	0.027462	1	3207	3207		20.837	0	1	29726			55019	1432	45421	45460	60086	60086					0.08297414506046152
SRLFIITGKEE	11	Unmodified	_SRLFIITGKEE_					0	0	0			REV__tr|A0A7D7A080|A0A7D7A080_9CLOTAnaerobicsulfitereductasesubunitAOS=ClostridiumintestinaleOX=36845GN=asrAPE=4SV=1	REV__tr|A0A7D7A080|A0A7D7A080_9CLOTAnaerobicsulfitereductasesubunitAOS=ClostridiumintestinaleOX=36845GN=asrAPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	431.2330017089844	3	431.578477	1291.7136	0.43197	0.00018643	0.90601	0.00039102	1.338	0.00057745	431.5790648178995	40.191	0.40544	37.237	36.963	37.368	-2.9541					10	7	2	0	0	0	0.025321	1	1699	1699		45.764	14.13	1	24054	+		55020	32440	45422	45461	60087	60087					0.07941313286096374
SRLFVDGL	8	Unmodified	_SRLFVDGL_					0	0	0			REV__ENSG00000096088|ENST00000373025|PGC	REV__ENSG00000096088|ENST00000373025|PGC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	454.7462158203125	2	453.75581	905.497067	0.58265	0.00026438	-0.8158	-0.00037017	-0.23315	-0.00010579	453.75527304644294	75.18	0.67465	71.949	71.726	72.4	-3.2308					25	13	3	0	0	0	0.028476	1	5903	5903		24.203	0	1	102560	+		55021	17302	45423	45462	60088	60088					0.04053802243049631
SRLGHFIASH	10	Unmodified	_SRLGHFIASH_					0	0	0		ENSG00000165186|ENST00000379361|PTCHD1	ENSG00000165186|ENST00000379361|PTCHD1	ENSG00000165186|ENST00000379361|PTCHD1	MULTI-SECPEP	OvCa9_classI_Rep2	2	563.3524169921875	2	562.801614	1123.58868	-0.50323	-0.00028322	-0.37355	-0.00021024	-0.87679	-0.00049346	562.8013787067194	116.3	0.94018	116.18	115.93	116.87	-0.12359					29	18	2	0	0	0	0.02663	1	11091	11091		51.193	13.381	1	31896			55022	6533	45424	45463	60089	60089					0.0318248566022703
SRLGLTRLN	9	Unmodified	_SRLGLTRLN_					0	0	0			REV__nc|ENSG00000169783|Q96FE5-2|LINGO1	REV__nc|ENSG00000169783|Q96FE5-2|LINGO1	MULTI-MSMS	OvCa9_classI_Rep2	2	515.3114624023438	2	515.311815	1028.60908	-2.0827	-0.0010732	1.7149	0.00088368	-0.36786	-0.00018956	515.312623228854	35.485	1.3896	32.775	32.503	33.893	-2.7097					66	27	3	0	0	0	0.56189	1	1493	1493		36.447	1.2947	1	694720	+		55023	21483	45425	45464	60090	60090					0.09591656320048969
SRLGQDLTPFF	11	Unmodified	_SRLGQDLTPFF_					0	0	0		ENST00000360222.8_1_19:14857708-14876689:-|nuORF	ENST00000360222.8_1_19:14857708-14876689:-|nuORF	ENST00000360222.8_1_19:14857708-14876689:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	428.2683410644531	3	427.559305	1279.65609	-1.0094	-0.00043158	-1.7309	-0.00074008	-2.7404	-0.0011717	427.55842924656787	56.511	0.5941	53.707	53.523	54.117	-2.804					24	11	3	0	0	0	0.025521	1	3993	3993		39.873	0	1	20479			55024	10769	45426	45465	60091	60091					0.02744471080495714
SRLGQDLTPFF	11	Unmodified	_SRLGQDLTPFF_					0	0	0		ENST00000360222.8_1_19:14857708-14876689:-|nuORF	ENST00000360222.8_1_19:14857708-14876689:-|nuORF	ENST00000360222.8_1_19:14857708-14876689:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	428.2698669433594	3	427.559305	1279.65609	0.51355	0.00021957	-3.4509	-0.0014755	-2.9373	-0.0012559	427.557745915048	57.277	0.96785	53.932	53.425	54.393	-3.3449					38	18	3	0	0	0	0.025298	1	3697	3697		34.087	22.154	1	68082			55025	10769	45426	45465	60092	60092					0.02744471080495714
SRLIKFRLL	9	Unmodified	_SRLIKFRLL_					0	0	0			REV__ENSG00000110944|ENST00000228534|IL23A	REV__ENSG00000110944|ENST00000228534|IL23A	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.3394775390625	2	573.3795	1144.74445	-0.42026	-0.00024097	1.3566	0.00077786	0.93636	0.00053689	573.8812789522759	71.377	0.27756	71.377	71.23	71.507	0					10	6	2	0	0	0	0.027462	1	6877	6877		14.865	0	1	106200	+		55026	18011	45427	45466	60093	60093					0.17786556181658852
SRLIVSDSM	9	Unmodified	_SRLIVSDSM_					0	0	0			REV__ENSG00000073734|ENST00000650372|ABCB11	REV__ENSG00000073734|ENST00000650372|ABCB11	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.2808837890625	2	504.263142	1006.51173	2.0279	0.0010226	2.0748	0.0010462	4.1027	0.0020688	504.2644435130089	85.682	0.24734	85.682	85.544	85.791	0					7	5	2	0	0	0	0.027462	1	9016	9016		10.265	0	1	381680	+		55027	16940	45428	45467	60094	60094					0.008735063288895617
SRLKGKPPL	9	Unmodified	_SRLKGKPPL_					0	0	0			REV__nc|ENSG00000143365|P51449-2|RORC	REV__nc|ENSG00000143365|P51449-2|RORC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.2884826660156	2	498.321651	994.62875	-0.95071	-0.00047376	1.103	0.00054965	0.15229	7.5892E-05	498.32183428737284	80.767	0.73037	78.056	77.714	78.445	-2.7106					20	14	2	0	0	0	0.027441	1	6572	6572		21.96	0	1	20791	+		55028	19833	45429	45468	60095	60095					0.13122032330807087
SRLKKQMSKY	10	Unmodified	_SRLKKQMSKY_					0	0	0			REV__ENSG00000101052|ENST00000373030|IFT52	REV__ENSG00000101052|ENST00000373030|IFT52	MULTI-MSMS	OvCa9_classI_Rep2	2	634.8588256835938	2	634.860815	1267.70708	-0.66778	-0.00042395	-3.5384	-0.0022464	-4.2062	-0.0026704	634.8585524737888	96.166	2.5594	95.138	94.813	97.373	-1.0281					149	51	5	0	0	0	0.42962	5	8653	8653;8656;8662;8681;8687		64.207	11.271	1	1938200	+		55029	17468	45430	45469	60096;60097;60098;60099;60100	60096					0.08393096853728821
SRLKKQMSKY	10	Unmodified	_SRLKKQMSKY_					0	0	0			REV__ENSG00000101052|ENST00000373030|IFT52	REV__ENSG00000101052|ENST00000373030|IFT52	MULTI-MSMS	OvCa9_classI_Rep3	3	634.8596801757812	2	634.860815	1267.70708	-0.44071	-0.00027979	-3.5488	-0.002253	-3.9895	-0.0025328	634.8585186686879	97.001	2.7047	95.173	94.827	97.532	-1.8286					162	52	5	0	0	0	0.45822	6	6443	6397;6401;6407;6413;6426;6443		60.118	7.0293	1	2573100	+		55030	17468	45430	45469	60101;60102;60103;60104;60105;60106	60106					0.08393096853728821
SRLKLNRKVI	10	Unmodified	_SRLKLNRKVI_					0	0	0		tr|A0A553SFA9|A0A553SFA9_NIACIL-arabinoseisomeraseOS=NialliacirculansOX=1397GN=araAPE=3SV=1	tr|A0A553SFA9|A0A553SFA9_NIACIL-arabinoseisomeraseOS=NialliacirculansOX=1397GN=araAPE=3SV=1	tr|A0A553SFA9|A0A553SFA9_NIACIL-arabinoseisomeraseOS=NialliacirculansOX=1397GN=araAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	409.60784912109375	3	409.606701	1225.79827	0.6889	0.00028218	2.4344	0.00099713	3.1233	0.0012793	409.60766459120623	104.29	12.102	103.72	103.28	115.38	-0.57639					699	244	5	0	0	0	0.63752	1	9778	9778		37.508	4.7576	1	1628000			55031	33015	45431	45470	60107	60107					0.19440728613380998
SRLKNQKDEHR	11	Unmodified	_SRLKNQKDEHR_					0	0	0			REV__nc|ENSG00000198838|Q15413-2|RYR3	REV__nc|ENSG00000198838|Q15413-2|RYR3	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.77154541015625	3	470.923529	1409.74876	-0.27605	-0.00013	0.75459	0.00035535	0.47854	0.00022536	470.9242730221814	42.662	0.343	42.662	42.496	42.839	0					10	7	2	0	0	0	0.026058	1	2748	2748		18.966	1.1332	1	37380	+		55032	23074	45432	45471	60108	60108					0.06027368866602956
SRLKWTTNTV	10	Unmodified	_SRLKWTTNTV_					0	0	0		chr19:12643946-12647233|126|34.85|0.1|8.42|-|2|None,MAN2B1|1	chr19:12643946-12647233|126|34.85|0.1|8.42|-|2|None,MAN2B1|1	chr19:12643946-12647233|126|34.85|0.1|8.42|-|2|None,MAN2B1|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	402.2470703125	3	402.559417	1204.65642	1.1646	0.00046882	2.2348	0.00089966	3.3995	0.0013685	402.560221304418	58.923	0.92886	56.143	55.838	56.767	-2.7801					22	17	2	0	0	0	0.027118	1	4333	4333		9.2118	0	1	25651			55033	402	45433	45472	60109	60109					0.062278908003463584
SRLLDYKGRK	10	Unmodified	_SRLLDYKGRK_					0	0	0			REV__ENSG00000175110|ENST00000680020|MRPS22	REV__ENSG00000175110|ENST00000680020|MRPS22	MULTI-SECPEP	OvCa99_classI_Rep5	1	619.2896728515625	2	618.364579	1234.7146	1.8982	0.0011738	-3.3487	-0.0020707	-1.4505	-0.00089692	618.3632240621945	95.436	0.92181	95.436	94.992	95.913	0					30	21	2	0	0	0	0.026714	1	10454	10454		51.193	10.415	1	517860	+		55034	21871	45434	45473	60110	60110					0.10663572445628233
SRLLGNLVV	9	Unmodified	_SRLLGNLVV_					0	0	0		ENSG00000100726|ENST00000262319|TELO2	ENSG00000100726|ENST00000262319|TELO2	ENSG00000100726|ENST00000262319|TELO2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.7779846191406	2	485.805834	969.597115	-0.35778	-0.00017381	-0.72016	-0.00034986	-1.0779	-0.00052367	485.80509045580897	48.326	0.72095	45.218	44.988	45.709	-3.1077					20	13	2	0	0	0	0.027462	1	2639	2639		21.96	6.3181	1	19291			55035	2099	45435	45474	60111	60111					0.11110039576851705
SRLLLIGEDL	10	Unmodified	_SRLLLIGEDL_					0	0	0		L1MA4A_dup2646|chr7:55461716-55462655:-|2.470314538974461|0.4304615177296836|2.52|429.0|37|1|anti-sense	L1MA4A_dup2646|chr7:55461716-55462655:-|2.470314538974461|0.4304615177296836|2.52|429.0|37|1|anti-sense	L1MA4A_dup2646|chr7:55461716-55462655:-|2.470314538974461|0.4304615177296836|2.52|429.0|37|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	564.30908203125	2	564.834788	1127.65502	-0.98136	-0.00055431	1.1579	0.00065402	0.17653	9.9709E-05	564.8352966972218	117.55	0.99111	116.51	115.94	116.93	-1.0324					44	19	3	0	0	0	0.026891	1	8761	8761		12.812	0	1	57946			55036	14580	45436	45475	60112	60112					0.09630256711625407
SRLLLPRPL	9	Unmodified	_SRLLLPRPL_					0	0	0		ENST00000488527.5_1_7:962627-962927:-|nuORF	ENST00000488527.5_1_7:962627-962927:-|nuORF	ENST00000488527.5_1_7:962627-962927:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.8202514648438	2	532.850576	1063.6866	-1.0614	-0.00056559	0.83964	0.0004474	-0.22181	-0.00011819	532.8508650086774	70.216	0.4053	70.216	69.922	70.328	0					15	9	2	0	0	0	0.027462	1	6728	6728		19.104	3.4617	1	190940			55037	12667	45437	45476	60113	60113					0.15730294256218258
SRLLQYGLL	9	Unmodified	_SRLLQYGLL_					0	0	0		HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|20|1|sense	HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|20|1|sense	HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|20|1|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8173217773438	2	531.818941	1061.62333	0.089047	4.7357E-05	-3.7428	-0.0019905	-3.6538	-0.0019431	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.67104	1	13717	13717		23.523	0.94304	1	263230			55038	14434	45438	45477	60114	60114					0.09498308748334239
SRLLRPHS	8	Unmodified	_SRLLRPHS_					0	0	0		ENST00000462628.5_1_19:55146093-55147330:+|nuORF	ENST00000462628.5_1_19:55146093-55147330:+|nuORF	ENST00000462628.5_1_19:55146093-55147330:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.2779235839844	2	483.2856	964.556647	1.6767	0.00081031	3.3049	0.0015972	4.9816	0.0024075	483.2871063972259	78.835	0.49371	78.835	78.625	79.119	0					15	11	2	0	0	0	0.028476	1	8046	8046		8.2313	0	1	235340			55039	12206	45439	45478	60115	60115					0.07295117977082555
SRLLSLCFFR	10	Unmodified	_SRLLSLCFFR_					0	0	0			REV__ENST00000565140.5_3_16:28489128-28499933:-|nuORF	REV__ENST00000565140.5_3_16:28489128-28499933:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.2494201660156	3	414.565626	1240.67505	0.35055	0.00014533	3.0288	0.0012556	3.3793	0.0014009	414.56682584951574	54.401	0.5021	54.401	54.13	54.632	0					19	11	2	0	0	0	0.027056	1	4373	4373		6.3209	2.9122	1	347000	+		55040	27677	45440	45479	60116	60116					0.06433729170566949
SRLLVKHR	8	Unmodified	_SRLLVKHR_					0	0	0			REV__ENSG00000072195|ENST00000312358|SPEG	REV__ENSG00000072195|ENST00000312358|SPEG	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.8210754394531	2	504.824892	1007.63523	-0.3325	-0.00016785	2.8148	0.001421	2.4823	0.0012531	504.8261031240268	110.04	0.84059	109.86	109.61	110.45	-0.17237					20	16	2	0	0	0	0.028476	1	10381	10381		42.396	3.59	1	33532	+		55041	16913	45441	45480	60117	60117					0.13171970282178336
SRLMRRHKRRR	11	Unmodified	_SRLMRRHKRRR_					0	0	0		nc|ENSG00000161202|Q92997-2|DVL3;ENSG00000161202|ENST00000313143|DVL3;ENST00000478247.1_1_3:183882805-183888540:+|nuORF	nc|ENSG00000161202|Q92997-2|DVL3	nc|ENSG00000161202|Q92997-2|DVL3	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.2779541015625	3	517.983171	1550.92768	2.1524	0.0011149	0.76792	0.00039777	2.9203	0.0015127	517.9836433553387	106.25	0.5237	106.25	106.01	106.54	0					15	11	2	0	0	0	0.026472	1	11923	11923		2.688	0	1	132720			55042	6122	45442	45481	60118	60118					0.17425599744319697
SRLNFLNN	8	Unmodified	_SRLNFLNN_					0	0	0			REV__ENSG00000174482|ENST00000698399|LINGO2	REV__ENSG00000174482|ENST00000698399|LINGO2	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.287109375	2	489.261791	976.509028	1.6534	0.00080895	2.2842	0.0011176	3.9376	0.0019265	489.2627772778689	83.761	1.0101	83.761	83.293	84.303	0					43	23	3	0	0	0	0.028476	1	8762	8762		44.117	26.752	1	1432100	+		55043	21835	45443	45482	60119	60119					0.019834189862194762
SRLPHATIV	9	Unmodified	_SRLPHATIV_					0	0	0		ENSG00000269313|ENST00000595224|MAGIX	ENSG00000269313|ENST00000595224|MAGIX	ENSG00000269313|ENST00000595224|MAGIX	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.7596130371094	2	497.295633	992.576714	0.17238	8.5723E-05	-0.01223	-6.082E-06	0.16015	7.9641E-05	497.2954312259366	64.709	1.0172	61.223	60.969	61.987	-3.4854					41	20	3	0	0	0	0.027462	1	4707	4707		42.396	14.142	1	163050			55044	9541	45444	45483	60120	60120					0.08012868917057858
SRLPQRGRE	9	Unmodified	_SRLPQRGRE_					0	0	0			REV__nc|ENSG00000197487|Q9UBC7-2|GALP	REV__nc|ENSG00000197487|Q9UBC7-2|GALP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.8302612304688	2	549.809971	1097.60539	-0.41857	-0.00023013	-2.1017	-0.0011555	-2.5203	-0.0013857	550.3090422351731	83.139	0.24342	80.456	80.319	80.563	-2.6829					6	4	2	0	0	0	0.027462	1	6901	6901		39.253	0	1	38054	+		55045	29082	45445	45484	60121	60121					0.06048986546170454
SRLPSSSL	8	Unmodified	_SRLPSSSL_					0	0	0			REV__ENST00000302754.5_1_19:12902775-12902856:+|nuORF	REV__ENST00000302754.5_1_19:12902775-12902856:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	424.73590087890625	2	423.737617	845.460681	0.11359	4.8131E-05	-2.258	-0.00095681	-2.1444	-0.00090868	423.73700040415133	59.517	0.44299	56.125	55.854	56.297	-3.392					10	8	2	0	0	0	0.028476	1	3982	3982		12.207	0	1	22565	+		55046	24263	45446	45485	60122	60122					0.03176925346326698
SRLPWLGK	8	Unmodified	_SRLPWLGK_					0	0	0			REV__ENST00000545930.5_1_11:61082914-61091715:-|nuORF	REV__ENST00000545930.5_1_11:61082914-61091715:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.74884033203125	2	478.787444	955.560336	2.2224	0.0010641	0.13177	6.309E-05	2.3542	0.0011272	478.7872805188859	76.93	0.82201	76.93	76.6	77.422	0					53	19	4	0	0	0	0.028476	1	7703	7703		16.473	5.6076	1	2287100	+		55047	21330	45447	45486	60123	60123					0.08077787750960397
SRLQCRLN	8	Unmodified	_SRLQCRLN_					0	0	0			REV__ENST00000533753.5_1_11:64812381-64812468:-|nuORF	REV__ENST00000533753.5_1_11:64812381-64812468:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2837829589844	2	495.269093	988.523633	-0.1704	-8.4391E-05	2.6656	0.0013202	2.4953	0.0012358	495.2702288380075	60.838	0.599	60.838	60.646	61.245	0					25	13	2	0	0	0	0.028476	1	5370	5370		16.473	5.6076	1	800070	+		55048	27259	45448	45487	60124	60124					0.028911678627196125
SRLQCRLN	8	Unmodified	_SRLQCRLN_					0	0	0			REV__ENST00000533753.5_1_11:64812381-64812468:-|nuORF	REV__ENST00000533753.5_1_11:64812381-64812468:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	495.269093	988.523633	-0.63557	-0.00031478	-3.399	-0.0016834	-4.0346	-0.0019982	495.2670183844287	63.822	0.42226	61.078	60.895	61.318	-2.7444	0.059469	-0.0050659	NaN	10.866	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5249.8	+		55049	27259	45448	45487							0.028911678627196125
SRLQCRLN	8	Unmodified	_SRLQCRLN_					0	0	0			REV__ENST00000533753.5_1_11:64812381-64812468:-|nuORF	REV__ENST00000533753.5_1_11:64812381-64812468:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	495.269093	988.523633	0.40495	0.00020056	-5.1142	-0.0025329	-4.7092	-0.0023323	495.26621398197824	64.624	0.38914	61.139	61.018	61.407	-3.4854	0.12065	-0.0067648	NaN	10.866	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23429	+		55050	27259	45448	45487							0.028911678627196125
SRLQGLQKLIN	11	Unmodified	_SRLQGLQKLIN_					0	0	0		ENSG00000124659|ENST00000372876|TBCC	ENSG00000124659|ENST00000372876|TBCC	ENSG00000124659|ENST00000372876|TBCC	MSMS	OvCa99_classI_Rep5	1	635.386474609375	2	635.385511	1268.75647	NaN	NaN	NaN	NaN	NaN	NaN	NaN	158.61	1	158.61	158.11	159.11	0								0	0	0	0.19474	1	18589	18589		21.686	3.4237	1				55051	3668	45449	45488	60125	60125					0.13284128134205275
SRLQQGDIIL	10	Unmodified	_SRLQQGDIIL_					0	0	0			REV__ENSG00000138653|ENST00000264363|NDST4	REV__ENSG00000138653|ENST00000264363|NDST4	MULTI-MSMS	OvCa99_classI_Rep5	1	571.8320922851562	2	571.830037	1141.64552	-0.059094	-3.3792E-05	-0.50405	-0.00028823	-0.56314	-0.00032202	571.829735182503	57.073	1.1146	57.073	56.744	57.859	0					65	25	6	0	0	0	0.11632	1	4762	4762		109.48	5.4215	1	8209600	+		55052	19555	45450	45489	60126	60126					0.08036488426114374
SRLRGPAPRPP	11	Unmodified	_SRLRGPAPRPP_					0	0	0		ENST00000370551.8_1_1:87380589-87538650:+|nuORF	ENST00000370551.8_1_1:87380589-87538650:+|nuORF	ENST00000370551.8_1_1:87380589-87538650:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	401.2119445800781	3	401.907151	1202.69962	1.812	0.00072827	-2.0804	-0.00083612	-0.26834	-0.00010785	401.9062764357213	20.877	0.75692	19.539	19.158	19.915	-1.3386					23	15	2	0	0	0	0.025722	1	65	65		16.53	1.1967	1	14372			55053	10932	45451	45490	60127	60127					0.10638125368291185
SRLRKGLDPI	10	Unmodified	_SRLRKGLDPI_					0	0	0		tr|A0A553SK39|A0A553SK39_NIACICitratesynthaseOS=NialliacirculansOX=1397GN=citZPE=3SV=1	tr|A0A553SK39|A0A553SK39_NIACICitratesynthaseOS=NialliacirculansOX=1397GN=citZPE=3SV=1	tr|A0A553SK39|A0A553SK39_NIACICitratesynthaseOS=NialliacirculansOX=1397GN=citZPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.278564453125	2	577.853847	1153.69314	0.92896	0.0005368	0.52594	0.00030392	1.4549	0.00084072	577.8539992904499	81.592	1.3964	81.592	80.91	82.307	0					48	33	3	0	0	0	0.026891	1	8395	8395		31.53	0	1	1249300			55054	33574	45452	45491	60128	60128					0.12244187416945351
SRLRPPRASV	10	Unmodified	_SRLRPPRASV_					0	0	0			REV__SVA_D_dup912|chr11:73935626-73937666:-|1.861451030615439|0.3832838640500095|2.28|429.0|23|2|sense	REV__SVA_D_dup912|chr11:73935626-73937666:-|1.861451030615439|0.3832838640500095|2.28|429.0|23|2|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	569.845703125	2	569.843813	1137.67307	0.70877	0.00040389	2.7341	0.001558	3.4428	0.0019619	569.8452383624614	66.591	2.2644	63.645	63.265	65.53	-2.9459					89	44	4	0	0	0	0.75313	1	2747	2747		24.519	5.4157	1	226750	+		55055	15815	45453	45492	60129	60129					0.10974436476976734
SRLSFKPF	8	Unmodified	_SRLSFKPF_					0	0	0			REV__PPP2R2A-DHTKD1|2|fusion	REV__PPP2R2A-DHTKD1|2|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.7408447265625	2	491.279452	980.544351	-1.5916	-0.00078194	-2.6822	-0.0013177	-4.2739	-0.0020997	491.2779635507767	49.179	1.9228	46.037	45.78	47.702	-3.1416					69	36	3	0	0	0	0.028476	1	2848	2848		35.618	0	1	310190	+		55056	29315	45454	45493	60130	60130					0.053300815140460145
SRLSKELLA	9	Unmodified	_SRLSKELLA_					0	0	0		nc|ENSG00000185043|Q99828-2|CIB1;ENSG00000185043|ENST00000328649|CIB1	nc|ENSG00000185043|Q99828-2|CIB1	nc|ENSG00000185043|Q99828-2|CIB1	MULTI-MSMS	OvCa9_classI_Rep2	2	508.8068542480469	2	508.808574	1015.60259	-1.1049	-0.00056221	0.50065	0.00025473	-0.6043	-0.00030747	508.8087276313577	60.665	1.7306	57.895	57.396	59.126	-2.7702					90	32	4	0	0	0	0.38969	1	4452	4452		52.937	6.9645	1	689010			55057	8218	45455	45494	60131	60131					0.09541718368654983
SRLSLLMLTTI	11	Unmodified	_SRLSLLMLTTI_					0	0	0			REV__ENSG00000196497|ENST00000354464|IPO4;REV__ENST00000558780.5_2_14:24651254-24657791:-|nuORF	REV__ENST00000558780.5_2_14:24651254-24657791:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	624.37353515625	2	624.373223	1246.73189	-5.6311	-0.0035159	1.1365	0.00070959	-4.4946	-0.0028063	624.3738220162429	161.95	0.61571	161.72	161.43	162.05	-0.22696					21	11	2	0	0	0	0.70848	1	16486	16486		17.468	7.2028	1	20661	+		55058	22836;27589	45456	45495	60132	60132					0.11839731936424869
SRLSLLMLTTI	11	Unmodified	_SRLSLLMLTTI_					0	0	0			REV__ENSG00000196497|ENST00000354464|IPO4;REV__ENST00000558780.5_2_14:24651254-24657791:-|nuORF	REV__ENST00000558780.5_2_14:24651254-24657791:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	624.375244140625	2	624.373223	1246.73189	-6.4688	-0.004039	3.379	0.0021098	-3.0898	-0.0019292	624.3749313698447	163.73	0.6391	162.09	161.79	162.43	-1.6336					37	17	3	0	0	0	0.70315	1	16162	16162		19.104	0	1	75169	+		55059	22836;27589	45456	45495	60133	60133					0.11839731936424869
SRLSRPRLY	9	Unmodified	_SRLSRPRLY_					0	0	0			REV__ENSG00000279263|ENST00000623922|OR2L8	REV__ENSG00000279263|ENST00000623922|OR2L8	MULTI-SECPEP	OvCa9_classI_Rep3	3	574.3087158203125	2	574.338364	1146.66217	0.51098	0.00029348	-0.657	-0.00037734	-0.14602	-8.3863E-05	574.3372005085185	127.51	0.26195	126.42	126.26	126.52	-1.085					6	4	2	0	0	0	0.027462	1	9989	9989		33.922	3.6039	1	5712.3	+		55060	22991	45457	45496	60134	60134					0.0947103410269392
SRLSTLKIEN	10	Unmodified	_SRLSTLKIEN_					0	0	0		nc|ENSG00000196369|P0DMP2|SRGAP2B;ENSG00000196369|ENST00000641863|SRGAP2B;SRGAP2|p.D724Vfs*88|1|0.04|ENSG00000266028|chr1:206450460-206450460|A/-|frameshift_variant;ENSG00000266028|ENST00000573034|SRGAP2;ENST00000483628.1_1:206566231-206579954:+|nuORF;ENSG00000171943|ENST00000367123|SRGAP2C	nc|ENSG00000196369|P0DMP2|SRGAP2B	nc|ENSG00000196369|P0DMP2|SRGAP2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.302734375	2	580.83532	1159.65609	-1.0824	-0.00062869	-3.699	-0.0021485	-4.7814	-0.0027772	581.334287859048	53.471	0.43608	53.471	53.214	53.651	0					12	9	2	0	0	0	0.027422	1	4258	4258		82.241	2.5279	1	206930			55061	8598	45458	45497	60135	60135					0.08264471080519797
SRLTLARSL	9	Unmodified	_SRLTLARSL_					0	0	0		ENSG00000188596|ENST00000524981|CFAP54;nc|ENSG00000188596|Q96N23-2|CFAP54;ENST00000342887.1_1_12:97043703-97159031:+|nuORF	ENSG00000188596|ENST00000524981|CFAP54	ENSG00000188596|ENST00000524981|CFAP54	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.815673828125	2	508.81419	1015.61383	-0.3083	-0.00015687	2.4682	0.0012559	2.1599	0.001099	508.81539821309786	75.996	4.7929	73.057	72.594	77.387	-2.9389					288	99	5	0	0	0	0.44248	1	6123	6123		47.96	0.30219	1	9248900			55062	8482	45459	45498	60136	60136					0.1066454046281251
SRLTNFVPP	9	Unmodified	_SRLTNFVPP_					0	0	0			REV__ENSG00000164134|ENST00000296543|NAA15	REV__ENSG00000164134|ENST00000296543|NAA15	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.2696533203125	2	515.787641	1029.56073	-1.2607	-0.00065028	-2.5221	-0.0013009	-3.7829	-0.0019512	515.786065826466	34.408	0.33017	34.408	34.209	34.539	0					14	6	3	0	0	0	0.027462	1	1645	1645		29.15	0	1	97291	+		55063	20948	45460	45499	60137	60137					0.04713162680127425
SRLVHTLSS	9	Unmodified	_SRLVHTLSS_					0	0	0			REV__ENSG00000115942|ENST00000234296|ORC2	REV__ENSG00000115942|ENST00000234296|ORC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.7665100097656	2	500.282723	998.550893	-0.5334	-0.00026685	-1.5797	-0.00079028	-2.1131	-0.0010571	500.2812428328476	40.455	0.65001	40.455	40.016	40.666	0					22	13	3	0	0	0	0.027433	1	2478	2478		54.776	5.3348	1	234020	+		55064	18279	45461	45500	60138	60138					0.051559746747557256
SRLVISANN	9	Unmodified	_SRLVISANN_					0	0	0			REV__ENST00000525268.2_1_11:77612536-77632479:-|nuORF	REV__ENST00000525268.2_1_11:77612536-77632479:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.2516784667969	2	487.274898	972.535243	-0.027876	-1.3583E-05	-1.2078	-0.00058852	-1.2357	-0.0006021	487.27428779665405	31.732	0.24836	31.732	31.608	31.857	0					7	4	2	0	0	0	0.027462	1	1332	1332		44.117	31.91	1	47388	+		55065	27111	45462	45501	60139	60139					0.04787688157705361
SRLVSTNRCPL	11	Unmodified	_SRLVSTNRCPL_					0	0	0		ENST00000506481.1_1_4:125356953-125357223:-|nuORF	ENST00000506481.1_1_4:125356953-125357223:-|nuORF	ENST00000506481.1_1_4:125356953-125357223:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	623.810546875	2	623.340246	1244.66594	1.0906	0.00067984	-4.1214	-0.002569	-3.0307	-0.0018892	623.3373612556657	133.03	0.7106	133.03	132.46	133.17	0					19	14	2	0	0	0	0.02548	1	15450	15450		36.318	2.396	1	66366			55066	12910	45463	45502	60140	60140					0.05339335814255719
SRLYPKVLP	9	Unmodified	_SRLYPKVLP_					0	0	0			REV__nc|ENSG00000141367|Q00610-2|CLTC	REV__nc|ENSG00000141367|Q00610-2|CLTC	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3510131835938	2	536.829309	1071.64407	2.301	0.0012352	-0.53005	-0.00028455	1.7709	0.00095069	536.8289463642765	84.861	0.53693	84.861	84.55	85.087	0					31	12	3	0	0	0	0.027461	1	8873	8873		32.812	3.6629	1	899280	+		55067	19729	45464	45503	60141	60141					0.11110899127993434
SRMEQYANN	9	Unmodified	_SRMEQYANN_					0	0	0		ENST00000368677.2_1_1:153661447-153665772:+|nuORF;ENSG00000169418|ENST00000368680|NPR1	ENST00000368677.2_1_1:153661447-153665772:+|nuORF	ENST00000368677.2_1_1:153661447-153665772:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.775634765625	2	556.743105	1111.47166	0.26611	0.00014815	0.15846	8.8223E-05	0.42457	0.00023638	556.7431481712669	52.143	0.55515	48.935	48.692	49.247	-3.208					15	10	2	0	0	0	0.027455	1	3075	3075		34.173	13.226	1	37340			55068	7008	45465	45504	60142	60142					-0.07962040341703869
SRMLGVLIAVI	11	Unmodified	_SRMLGVLIAVI_					0	0	0			REV__tr|A0A7D6VNJ7|A0A7D6VNJ7_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18160PE=3SV=1	REV__tr|A0A7D6VNJ7|A0A7D6VNJ7_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18160PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	586.3682861328125	2	586.365201	1170.71585	-0.78039	-0.00045759	4.0922	0.0023995	3.3118	0.0019419	586.367494067753	25.418	0.30142	25.418	25.242	25.544	0					11	5	3	0	0	0	0.5466	1	565	565		49.536	3.5638	1	55266	+		55069	31186	45466	45505	60143	60143					0.1373207049020948
SRMLLMLMVK	10	Unmodified	_SRMLLMLMVK_					0	0	0			REV__ENST00000482628.5_1_3:158317956-158320640:+|nuORF	REV__ENST00000482628.5_1_3:158317956-158320640:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3505249023438	2	611.34764	1220.68073	2.8968	0.0017709	2.6358	0.0016114	5.5326	0.0033824	611.3491630908582	125.96	1.25	124.91	124.58	125.83	-1.0525					67	23	4	0	0	0	0.73063	1	9834	9834		27.047	0.3544	1	429160	+		55070	26507	45467	45506	60144	60144					0.07921368366373827
SRMLLSLVI	9	Unmodified	_SRMLLSLVI_					0	0	0			REV__ENSG00000156875|ENST00000370152|MFSD14A	REV__ENSG00000156875|ENST00000370152|MFSD14A	MULTI-MSMS	OvCa99_classI_Rep5	1	516.3185424804688	2	516.31772	1030.62089	2.5175	0.0012999	-3.1744	-0.001639	-0.65686	-0.00033915	516.3159841482336	115.87	0.64936	115.87	115.54	116.19	0					24	12	2	0	0	0	0.40667	1	13241	13241		51.335	1.8939	1	363470	+		55071	20500	45468	45507	60145	60145					0.10680137019016911
SRMRKEEN	8	Unmodified	_SRMRKEEN_					0	0	0			REV__ENSG00000138398|ENST00000260970|PPIG	REV__ENSG00000138398|ENST00000260970|PPIG	MULTI-MSMS	OvCa9_classI_Rep3	3	525.2603759765625	2	525.261465	1048.50838	-1.4268	-0.00074946	0.7924	0.00041622	-0.63443	-0.00033324	525.2617261128773	135.8	1.2792	134.69	134.36	135.64	-1.1076					47	25	3	0	0	0	0.58851	1	10996	10996		66.429	5.4573	1	79711	+		55072	19537	45469	45508	60146	60146					-0.013937437251115625
SRNAGKLI	8	Unmodified	_SRNAGKLI_					0	0	0		ENSG00000137992|ENST00000370132|DBT	ENSG00000137992|ENST00000370132|DBT	ENSG00000137992|ENST00000370132|DBT	MULTI-MSMS	OvCa99_classI_Rep5	1	429.76287841796875	2	429.761426	857.5083	-0.46898	-0.00020155	0.38757	0.00016656	-0.081414	-3.4989E-05	429.7614828006545	70.305	0.94121	70.305	70.089	71.031	0					52	23	3	0	0	0	0.6962	1	6726	6726		44.117	3.5442	1	7582400			55073	4643	45470	45509	60147	60147					0.07384624337169043
SRNENLRLL	9	Unmodified	_SRNENLRLL_					0	0	0		ENST00000490265.5_1_X:13771424-13787224:+|nuORF;nc|ENSG00000046651|O75665-3|OFD1;ENSG00000046651|ENST00000340096|OFD1	ENST00000490265.5_1_X:13771424-13787224:+|nuORF	ENST00000490265.5_1_X:13771424-13787224:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	557.822021484375	2	557.820004	1113.62546	0.60761	0.00033894	0.0020299	1.1323E-06	0.60964	0.00034007	557.8196759754745	63.031	0.86671	63.031	62.703	63.57	0					50	21	4	0	0	0	0.075543	1	5645	5645		104.06	19.141	1	2626000			55074	1136	45471	45510	60148	60148					0.07318737486116333
SRNGLPVQA	9	Unmodified	_SRNGLPVQA_					0	0	0		nc|ENSG00000100767|O95428-2|PAPLN;ENST00000557061.5_1_14:73729237-73739369:+|nuORF;nc|ENSG00000100767|O95428-6|PAPLN;nc|ENSG00000100767|O95428-5|PAPLN;ENSG00000100767|ENST00000644200|PAPLN	nc|ENSG00000100767|O95428-2|PAPLN	nc|ENSG00000100767|O95428-2|PAPLN	MULTI-MSMS	OvCa9_classI_Rep2	2	471.2613525390625	2	471.261791	940.509028	0.74224	0.00034979	-0.77963	-0.00036741	-0.037385	-1.7618E-05	471.26127618416797	42.586	1.0873	39.876	39.621	40.708	-2.7097					50	21	3	0	0	0	0.51865	1	2308	2308		40.778	0.20554	1	212530			55075	2104	45472	45511	60149	60149					0.036394189862335224
SRNIGIFHPS	10	Unmodified	_SRNIGIFHPS_					0	0	0		ENST00000406117.6_1_22:44322822-44359208:+|nuORF;nc|ENSG00000100344|Q9NST1-2|PNPLA3;ENSG00000100344|ENST00000216180|PNPLA3	ENST00000406117.6_1_22:44322822-44359208:+|nuORF	ENST00000406117.6_1_22:44322822-44359208:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	564.8048706054688	2	564.301447	1126.58834	-0.2712	-0.00015304	-2.7134	-0.0015312	-2.9846	-0.0016842	564.2999077161287	98.807	1.338	97.914	97.216	98.554	-0.89306					43	26	2	0	0	0	0.026826	1	9055	9055		44.377	12.847	1	64017			55076	2049	45473	45512	60150	60150					0.030110659403817408
SRNLLSSVVN	10	Unmodified	_SRNLLSSVVN_					0	0	0		tr|A0A7D6VLL3|A0A7D6VLL3_9CLOTTetR/AcrRfamilytranscriptionalregulatorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12350PE=4SV=1	tr|A0A7D6VLL3|A0A7D6VLL3_9CLOTTetR/AcrRfamilytranscriptionalregulatorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12350PE=4SV=1	tr|A0A7D6VLL3|A0A7D6VLL3_9CLOTTetR/AcrRfamilytranscriptionalregulatorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12350PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.8095703125	2	544.806562	1087.59857	0.021567	1.175E-05	3.5206	0.001918	3.5421	0.0019298	544.8086236805556	113.6	0.9263	112.15	111.75	112.68	-1.4461					45	18	4	0	0	0	0.67987	1	10529	10529		32.751	4.8683	1	116950			55077	34639	45474	45513	60151	60151					0.058276288749766536
SRNLLSSVVN	10	Unmodified	_SRNLLSSVVN_					0	0	0		tr|A0A7D6VLL3|A0A7D6VLL3_9CLOTTetR/AcrRfamilytranscriptionalregulatorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12350PE=4SV=1	tr|A0A7D6VLL3|A0A7D6VLL3_9CLOTTetR/AcrRfamilytranscriptionalregulatorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12350PE=4SV=1	tr|A0A7D6VLL3|A0A7D6VLL3_9CLOTTetR/AcrRfamilytranscriptionalregulatorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12350PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	544.806562	1087.59857	0.30852	0.00016808	3.2603	0.0017762	3.5688	0.0019443	544.8083040458816	112.3	1.2328	112.18	111.78	113.02	-0.12173	0.040019	3.6522E-05	NaN	32.751	43	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82398			55078	34639	45474	45513							0.058276288749766536
SRNLLSSVVN	10	Unmodified	_SRNLLSSVVN_					0	0	0		tr|A0A7D6VLL3|A0A7D6VLL3_9CLOTTetR/AcrRfamilytranscriptionalregulatorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12350PE=4SV=1	tr|A0A7D6VLL3|A0A7D6VLL3_9CLOTTetR/AcrRfamilytranscriptionalregulatorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12350PE=4SV=1	tr|A0A7D6VLL3|A0A7D6VLL3_9CLOTTetR/AcrRfamilytranscriptionalregulatorC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12350PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	544.806562	1087.59857	1.0004	0.00054504	3.1132	0.0016961	4.1136	0.0022411	544.8080921675136	113.15	1.2206	112.08	111.81	113.03	-1.0753	-0.057825	-0.00012375	NaN	32.751	45	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100290			55079	34639	45474	45513							0.058276288749766536
SRNLTKATK	9	Unmodified	_SRNLTKATK_					0	0	0		tr|A0A7D6W3D8|A0A7D6W3D8_9CLOTHNHendonucleaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09460PE=4SV=1	tr|A0A7D6W3D8|A0A7D6W3D8_9CLOTHNHendonucleaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09460PE=4SV=1	tr|A0A7D6W3D8|A0A7D6W3D8_9CLOTHNHendonucleaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09460PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.8053283691406	2	509.803823	1017.59309	2.0238	0.0010317	-2.1568	-0.0010995	-0.13299	-6.7799E-05	509.80258654056354	136.53	4.9049	134.99	133.61	138.51	-1.5437					290	101	5	0	0	0	0.679	1	13550	13550		22.58	0.87732	1	173450			55080	35451	45475	45514	60152	60152					0.08499950083137264
SRNRRFCR	8	Unmodified	_SRNRRFCR_					0	0	0			REV__ENST00000477757.5_1_10:97007037-97007094:-|nuORF	REV__ENST00000477757.5_1_10:97007037-97007094:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	546.8106079101562	2	547.791058	1093.56756	-0.36403	-0.00019941	-1.7692	-0.00096917	-2.1333	-0.0011686	547.7901916547534	79.316	0.69905	76.976	76.61	77.309	-2.3399					17	13	2	0	0	0	0.028476	1	4269	4269		47.916	0.25827	1	47516	+		55081	26394	45476	45515	60153	60153					0.024521970797195536
SRNSSGEAPR	10	Unmodified	_SRNSSGEAPR_					0	0	0		ENST00000559567.1_15:82944860-82944965:+|nuORF	ENST00000559567.1_15:82944860-82944965:+|nuORF	ENST00000559567.1_15:82944860-82944965:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8202514648438	2	530.760143	1059.50573	-0.23213	-0.00012321	1.982	0.001052	1.7499	0.00092878	530.7608291565505	44.858	0.94171	44.858	44.26	45.202	0					39	20	3	0	0	0	0.026931	1	3071	3071		23.523	0	1	882850			55082	13720	45477	45516	60154	60154					-0.021638758584231255
SRNYQAIWG	9	Unmodified	_SRNYQAIWG_					0	0	0			REV__tr|A0A553ST38|A0A553ST38_NIACIHEATrepeatdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04215PE=4SV=1	REV__tr|A0A553ST38|A0A553ST38_NIACIHEATrepeatdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04215PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.6334838867188	2	547.772522	1093.53049	-0.067606	-3.7033E-05	3.6689	0.0020097	3.6013	0.0019727	548.2749702868765	31.91	0.34788	31.91	31.708	32.055	0					9	6	2	0	0	0	0.027462	1	1354	1354		27.882	2.3082	1	138200	+		55083	30913	45478	45517	60155	60155					-0.01253195985077582
SRPDIMYFW	9	Unmodified	_SRPDIMYFW_					0	0	0			REV__ENSG00000204740|ENST00000454679|MALRD1	REV__ENSG00000204740|ENST00000454679|MALRD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.75653076171875	3	405.526948	1213.55902	0.58954	0.00023908	-3.6003	-0.00146	-3.0107	-0.0012209	405.5253129229388	36.094	1.1781	36.094	35.799	36.977	0					47	25	3	0	0	0	0.027462	1	1868	1868		22.58	0	1	68992	+		55084	23183	45479	45518	60156	60156					-0.03922214400131452
SRPDLPLLV	9	Unmodified	_SRPDLPLLV_					0	0	0		nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	MULTI-MSMS	OvCa99_classI_Rep5	1	505.30712890625	2	505.305667	1008.59678	2.3737	0.0011994	-0.49663	-0.00025095	1.877	0.00094848	505.3053143814638	113.22	0.68619	113.22	112.92	113.61	0					36	16	3	0	0	0	0.46356	1	12920	12920		45.972	3.4978	1	454830			55085	8965	45480	45519	60157	60157					0.09282619857003738
SRPDPFAR	8	Unmodified	_SRPDPFAR_					0	0	0		ENSG00000080854|ENST00000533871|IGSF9B;ENST00000564347.1_1_11:133778966-133782218:-|nuORF	ENSG00000080854|ENST00000533871|IGSF9B	ENSG00000080854|ENST00000533871|IGSF9B	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.2827453613281	2	473.248683	944.482814	-0.24105	-0.00011408	-1.5461	-0.00073167	-1.7871	-0.00084574	473.24798994580243	54.15	0.32634	54.15	54.008	54.334	0					12	7	2	0	0	0	0.028476	1	4351	4351		23.042	0	1	260190			55086	1646	45481	45520	60158	60158					0.008351498147590064
SRPEFGIYG	9	Unmodified	_SRPEFGIYG_					0	0	0		tr|A0A553SKC1|A0A553SKC1_NIACIStageVsporulationproteinBOS=NialliacirculansOX=1397GN=spoVBPE=4SV=1	tr|A0A553SKC1|A0A553SKC1_NIACIStageVsporulationproteinBOS=NialliacirculansOX=1397GN=spoVBPE=4SV=1	tr|A0A553SKC1|A0A553SKC1_NIACIStageVsporulationproteinBOS=NialliacirculansOX=1397GN=spoVBPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.6223754882812	2	513.256174	1024.49779	1.082	0.00055535	2.1729	0.0011153	3.255	0.0016706	513.2570608371067	65.871	1.4984	63.175	62.417	63.915	-2.6958					41	29	2	0	0	0	0.027462	1	5044	5044		23.042	0	1	24654			55087	33599	45482	45521	60159	60159					-0.013474031079113047
SRPFFRDIV	9	Unmodified	_SRPFFRDIV_					0	0	0		ENST00000548477.5_1_12:113758097-113758427:-|nuORF;SLC8B1|p.S553Kfs*33|1|0.25|ENSG00000089060|chr12:113299874-113299875|-/AAGGGCCGCACTCTCGTGCCCACAAGGGCCT|frameshift_variant;ENSG00000089060|ENST00000680972|SLC8B1	ENST00000548477.5_1_12:113758097-113758427:-|nuORF	ENST00000548477.5_1_12:113758097-113758427:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.2421264648438	2	568.81419	1135.61383	0.055235	3.1419E-05	-1.2592	-0.00071627	-1.204	-0.00068485	568.8134208047888	61.006	0.29942	61.006	60.772	61.071	0					10	6	2	0	0	0	0.027462	1	5344	5344		30.504	7.4612	1	185710			55088	1808	45483	45522	60160	60160					0.05144540462788427
SRPHPYVF	8	Unmodified	_SRPHPYVF_					0	0	0		UBL4B|p.A170Qfs*80|1|0.46|ENSG00000186150|chr1:110113041-110113041|G/-|frameshift_variant	UBL4B|p.A170Qfs*80|1|0.46|ENSG00000186150|chr1:110113041-110113041|G/-|frameshift_variant	UBL4B|p.A170Qfs*80|1|0.46|ENSG00000186150|chr1:110113041-110113041|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.79339599609375	2	501.761426	1001.5083	-0.97182	-0.00048762	2.2625	0.0011352	1.2906	0.00064759	502.2653396679399	48.428	0.67065	45.32	45.039	45.709	-3.1077					19	12	2	0	0	0	0.028476	1	2677	2677		60.294	12.378	1	18982			55089	36290	45484	45523	60161	60161					0.007606243371810706
SRPHYCSAGE	10	Unmodified	_SRPHYCSAGE_					0	0	0		ENSG00000134504|ENST00000580059|KCTD1	ENSG00000134504|ENST00000580059|KCTD1	ENSG00000134504|ENST00000580059|KCTD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.804443359375	2	553.737822	1105.46109	-0.78825	-0.00043648	4.3615	0.0024151	3.5733	0.0019786	553.7400605269713	42.082	0.97417	39.102	38.906	39.88	-2.9804					33	18	3	0	0	0	0.026659	1	1969	1969		30.318	0	1	65145			55090	4302	45485	45524	60162	60162					-0.08742022996102605
SRPIAPAP	8	Unmodified	_SRPIAPAP_					0	0	0		nc|ENSG00000136715|Q9H0E3|SAP130;ENSG00000136715|ENST00000643581|SAP130;nc|ENSG00000136715|Q9H0E3-3|SAP130;SAP130|p.E452*|1|0.5|ENSG00000136715|chr2:127996417-127996429|GGCTACTCCTCTC/-|frameshift_variant	nc|ENSG00000136715|Q9H0E3|SAP130	nc|ENSG00000136715|Q9H0E3|SAP130	MULTI-SECPEP	OvCa9_classI_Rep2	2	404.5680236816406	2	404.73742	807.460287	0.74923	0.00030324	-0.14953	-6.052E-05	0.5997	0.00024272	404.7370655551321	57.43	1.347	54.638	54.178	55.525	-2.792					47	26	4	0	0	0	0.028476	1	4127	4127		13.775	0	1	86911			55091	4506	45486	45525	60163	60163					0.048855504171342545
SRPIGGRC	8	Unmodified	_SRPIGGRC_					0	0	0		ENSG00000182591|ENST00000332378|KRTAP11-1	ENSG00000182591|ENST00000332378|KRTAP11-1	ENSG00000182591|ENST00000332378|KRTAP11-1	MULTI-MSMS	OvCa99_classI_Rep5	1	423.225830078125	2	423.224154	844.433755	2.2151	0.0009375	1.0784	0.0004564	3.2935	0.0013939	423.22445984874025	77.552	0.67159	77.552	77.252	77.924	0					32	15	3	0	0	0	0.68714	1	7819	7819		45.952	4.7436	1	1789700			55092	8011	45487	45526	60164	60164					0.00531538254165298
SRPKKQLI	8	Unmodified	_SRPKKQLI_					0	0	0			REV__nc|ENSG00000138347|Q86TC9-2|MYPN;REV__PALLD-NFE2L2|1|fusion	REV__PALLD-NFE2L2|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.7467956542969	2	485.313826	968.613099	-0.77764	-0.0003774	0.44702	0.00021695	-0.33062	-0.00016045	485.3140137901691	53.416	0.4777	53.416	53.214	53.692	0					25	10	3	0	0	0	0.028476	1	4238	4238		44.117	8.4985	1	779100	+		55093	29275;19531	45488	45527	60165	60165					0.12753745813768091
SRPLLLALL	9	Unmodified	_SRPLLLALL_					0	0	0		ENSG00000134247|ENST00000393203|PTGFRN	ENSG00000134247|ENST00000393203|PTGFRN	ENSG00000134247|ENST00000393203|PTGFRN	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3341369628906	2	498.334227	994.653902	0.034655	1.727E-05	-0.51496	-0.00025662	-0.48031	-0.00023935	498.3339335091273	123.54	3.2541	123.31	122.99	126.25	-0.23193					175	65	5	0	0	0	0.38969	1	12151	12151		52.937	8.5595	1	3004600			55094	4267	45489	45528	60166	60166					0.15636087133361798
SRPLLLLL	8	Unmodified	_SRPLLLLL_					0	0	0		SORCS2|p.R839Lfs*24|1|0.03|ENSG00000184985|chr4:7723787-7723788|-/T|frameshift_variant;ENSG00000184985|ENST00000507866|SORCS2	SORCS2|p.R839Lfs*24|1|0.03|ENSG00000184985|chr4:7723787-7723788|-/T|frameshift_variant	SORCS2|p.R839Lfs*24|1|0.03|ENSG00000184985|chr4:7723787-7723788|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	462.8152770996094	2	462.81567	923.616788	-0.21264	-9.8413E-05	0.45063	0.00020856	0.23799	0.00011015	462.81559515302166	122.75	0.88939	122.54	122.27	123.15	-0.21803					29	17	3	0	0	0	0.74992	1	11898	11898		26.693	0	1	51587			55095	8209	45490	45529	60167	60167					0.15192415587614505
SRPMTTKPRAN	11	Oxidation (M)	_SRPM(Oxidation (M))TTKPRAN_		SRPM(1)TTKPRAN		SRPM(44)TTKPRAN	0	0	1			REV__ENSG00000160194|ENST00000354250|NDUFV3	REV__ENSG00000160194|ENST00000354250|NDUFV3	MULTI-MSMS	OvCa9_classI_Rep2	2	637.8355712890625	2	637.835328	1273.6561	-2.1907	-0.0013973	1.7392	0.0011093	-0.45149	-0.00028797	637.8362697686604	141.23	0.49661	141	140.78	141.27	-0.22696					28	9	4	0	0	0	0.6112	1	14148	14148		43.651	6.1426	1	85340	+		55096	20644	45491	45530	60168	60168		482			0.030221478088833464
SRPPLLGF	8	Unmodified	_SRPPLLGF_					0	0	0		ENSG00000009335|ENST00000348165|UBE3C;ENST00000470408.5_1_7:157015856-157060446:+|nuORF;ENST00000538070.1_1_12:109958991-109971866:+|nuORF;ENSG00000151148|ENST00000342494|UBE3B	ENSG00000009335|ENST00000348165|UBE3C;ENSG00000151148|ENST00000342494|UBE3B	ENSG00000009335|ENST00000348165|UBE3C	MULTI-MSMS	OvCa9_classI_Rep4_	4	443.76043701171875	2	443.760895	885.507237	-0.45224	-0.00020069	0.53928	0.00023931	0.087038	3.8624E-05	443.76099284322316	104.42	1.3357	102.3	102.01	103.34	-2.1192					41	25	2	0	0	0	0.68714	1	9456	9456		45.952	8.9235	1	255120			55097	928;5536	45492	45531	60169	60169					0.05990409968296717
SRPPLLGF	8	Unmodified	_SRPPLLGF_					0	0	0		ENSG00000009335|ENST00000348165|UBE3C;ENST00000470408.5_1_7:157015856-157060446:+|nuORF;ENST00000538070.1_1_12:109958991-109971866:+|nuORF;ENSG00000151148|ENST00000342494|UBE3B	ENSG00000009335|ENST00000348165|UBE3C;ENSG00000151148|ENST00000342494|UBE3B	ENSG00000009335|ENST00000348165|UBE3C	MULTI-MATCH	OvCa9_classI_Rep2	2		2	443.760895	885.507237	0.78269	0.00034733	-0.60488	-0.00026842	0.17781	7.8905E-05	443.7604942840348	102.87	1.2824	102.19	101.84	103.12	-0.68459	-0.056049	-0.00034094	NaN	45.952	59	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185590			55098	928;5536	45492	45531							0.05990409968296717
SRPPLLGF	8	Unmodified	_SRPPLLGF_					0	0	0		ENSG00000009335|ENST00000348165|UBE3C;ENST00000470408.5_1_7:157015856-157060446:+|nuORF;ENST00000538070.1_1_12:109958991-109971866:+|nuORF;ENSG00000151148|ENST00000342494|UBE3B	ENSG00000009335|ENST00000348165|UBE3C;ENSG00000151148|ENST00000342494|UBE3B	ENSG00000009335|ENST00000348165|UBE3C	MULTI-MATCH	OvCa9_classI_Rep3	3		2	443.760895	885.507237	0.46331	0.0002056	-0.59718	-0.000265	-0.13387	-5.9406E-05	443.7605115634735	103.68	1.462	102.25	101.87	103.33	-1.4347	0.0039848	-0.0003341	NaN	45.952	43	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	279300			55099	928;5536	45492	45531							0.05990409968296717
SRPPLVVF	8	Unmodified	_SRPPLVVF_					0	0	0		chr7:66921461-66922149|420|15.78|0.86|4.19|+|ENST00000607045|TMEM248,TMEM248;nc|ENSG00000106609|Q9NWD8-2|TMEM248;ENSG00000106609|ENST00000341567|TMEM248	chr7:66921461-66922149|420|15.78|0.86|4.19|+|ENST00000607045|TMEM248,TMEM248	chr7:66921461-66922149|420|15.78|0.86|4.19|+|ENST00000607045|TMEM248,TMEM248	MULTI-MSMS	OvCa9_classI_Rep2	2	457.7764587402344	2	457.776545	913.538538	-0.25139	-0.00011508	0.24429	0.00011183	-0.0070935	-3.2473E-06	457.7764102415244	102.67	3.5614	101.99	99.754	103.32	-0.68459					182	71	4	0	0	0	0.68714	2	9456	9456;9462		45.952	5.2042	1	377740			55100	529	45493	45532	60170;60171	60170					0.07830983002384073
SRPPLVVF	8	Unmodified	_SRPPLVVF_					0	0	0		chr7:66921461-66922149|420|15.78|0.86|4.19|+|ENST00000607045|TMEM248,TMEM248;nc|ENSG00000106609|Q9NWD8-2|TMEM248;ENSG00000106609|ENST00000341567|TMEM248	chr7:66921461-66922149|420|15.78|0.86|4.19|+|ENST00000607045|TMEM248,TMEM248	chr7:66921461-66922149|420|15.78|0.86|4.19|+|ENST00000607045|TMEM248,TMEM248	MULTI-MSMS	OvCa9_classI_Rep4_	4	457.7760009765625	2	457.776545	913.538538	-0.39102	-0.000179	0.41538	0.00019015	0.024361	1.1152E-05	457.77649602948713	104.24	3.4823	102.12	99.912	103.39	-2.1192					134	66	3	0	0	0	0.72896	1	9431	9431		37.159	1.9584	1	403820			55101	529	45493	45532	60172	60172					0.07830983002384073
SRPPPVVVP	9	Unmodified	_SRPPPVVVP_					0	0	0		nc|ENSG00000100258|Q9BU23-2|LMF2;ENSG00000100258|ENST00000474879|LMF2;ENST00000504717.1_1_22:50942898-50943677:-|nuORF	nc|ENSG00000100258|Q9BU23-2|LMF2	nc|ENSG00000100258|Q9BU23-2|LMF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.2891845703125	2	474.287277	946.560001	2.9498	0.001399	4.2892	0.0020343	7.239	0.0034334	474.28922077273074	129.53	5.9099	128.07	125.62	131.53	-1.4565					195	118	2	0	0	0	0.59983	1	12434	12434		31.955	2.8053	1	37993			55102	2035	45494	45533	60173	60173					0.08458368031097052
SRPPWILDE	9	Unmodified	_SRPPWILDE_					0	0	0			REV__ENST00000353383.5_2_17:17584885-17696414:+|nuORF	REV__ENST00000353383.5_2_17:17584885-17696414:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	556.7923583984375	2	556.790381	1111.56621	1.0433	0.00058088	1.4119	0.00078614	2.4552	0.001367	556.7911002915012	68.278	3.1173	64.788	64.526	67.643	-3.4902					185	63	5	0	0	0	0.40667	1	5170	5170		51.335	5.3632	1	3611900	+		55103	24729	45495	45534	60174	60174					0.014888414719507637
SRPQPSPPAGF	11	Unmodified	_SRPQPSPPAGF_					0	0	0		ENST00000309575.4_1_3:142838852-142839239:+|nuORF	ENST00000309575.4_1_3:142838852-142839239:+|nuORF	ENST00000309575.4_1_3:142838852-142839239:+|nuORF	MSMS	OvCa99_classI_Rep5	1	570.7971801757812	2	570.793455	1139.57236	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.94	1	124.94	124.44	125.44	0								0	0	0	0.16257	1	14428	14428		52.937	10.072	1				55104	10276	45496	45535	60175	60175					0.008153597034606719
SRPRPRPRA	9	Unmodified	_SRPRPRPRA_					0	0	0			REV__ENST00000610033.5_1_20:50140124-50159164:-|nuORF	REV__ENST00000610033.5_1_20:50140124-50159164:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.3143920898438	2	546.828498	1091.64244	-0.25132	-0.00013743	2.5456	0.001392	2.2943	0.0012546	546.8297862221526	52.437	0.52752	52.437	52.214	52.741	0					22	11	3	0	0	0	0.027462	1	4123	4123		34.173	14.176	1	381560	+		55105	28104	45497	45536	60176	60176					0.10028702882596008
SRPRPRRRR	9	Unmodified	_SRPRPRRRR_					0	0	0			REV__ENST00000549122.5_1_12:93965649-93966593:+|nuORF	REV__ENST00000549122.5_1_12:93965649-93966593:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	412.9258728027344	3	412.925539	1235.75479	3.0705	0.0012679	0.40187	0.00016594	3.4724	0.0014338	412.9250835867229	57.228	1.0137	54.078	53.461	54.475	-3.1504					42	32	2	0	0	0	0.66262	1	1679	1679		24.519	0	1	24423	+		55106	27453	45498	45537	60177	60177					0.1463397667944264
SRPSAAELL	9	Unmodified	_SRPSAAELL_					0	0	0		ENSG00000204131|ENST00000633930|NHSL2	ENSG00000204131|ENST00000633930|NHSL2	ENSG00000204131|ENST00000633930|NHSL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.7919616699219	2	472.263999	942.513445	2.77	0.0013082	-0.28749	-0.00013577	2.4825	0.0011724	472.26363672198585	89.319	0.43771	89.319	89.119	89.556	0					17	10	3	0	0	0	0.027461	1	9509	9509		58.782	12.83	1	499270			55107	8950	45499	45538	60178	60178					0.03988883409135724
SRPSVQEVI	9	Unmodified	_SRPSVQEVI_					0	0	0			REV__ENST00000460132.5_1_7:100853286-100853899:-|nuORF	REV__ENST00000460132.5_1_7:100853286-100853899:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.7709045410156	2	507.782556	1013.55056	-0.34167	-0.00017349	0.045996	2.3356E-05	-0.29567	-0.00015014	507.7819187579777	54.121	0.4486	54.121	53.929	54.378	0					22	10	3	0	0	0	0.027461	1	4331	4331		40.778	15.328	1	310580	+		55108	26073	45500	45539	60179	60179					0.04432554954905754
SRPSYRAAP	9	Unmodified	_SRPSYRAAP_					0	0	0			REV__chr20:31514734-31538179|304|10.85|0.59|4.21|+|1|HM13,HM13|1	REV__chr20:31514734-31538179|304|10.85|0.59|4.21|+|1|HM13,HM13|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.5938415527344	2	502.76724	1003.51993	1.8728	0.00094157	-2.4827	-0.0012482	-0.60996	-0.00030667	502.76579057206015	102.94	0.41856	102.94	102.76	103.18	0					15	9	2	0	0	0	0.027426	1	11495	11495		39.253	0	1	189090	+		55109	16012	45501	45540	60180	60180					0.018308213605109813
SRPTANHLL	9	Unmodified	_SRPTANHLL_					0	0	0		ENST00000409106.5_2_2:114513471-114513645:-|nuORF	ENST00000409106.5_2_2:114513471-114513645:-|nuORF	ENST00000409106.5_2_2:114513471-114513645:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.3536682128906	2	504.78289	1007.55123	2.0046	0.0010119	-3.3524	-0.0016923	-1.3479	-0.00068038	504.78109370668426	136.77	0.66867	136.77	136.35	137.01	0					32	13	3	0	0	0	0.027461	1	15953	15953		40.778	7.9657	1	52728			55110	11513	45502	45541	60181	60181					0.047753943946077015
SRPTGQQLE	9	Unmodified	_SRPTGQQLE_					0	0	0		ENSG00000170498|ENST00000367194|KISS1	ENSG00000170498|ENST00000367194|KISS1	ENSG00000170498|ENST00000367194|KISS1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3087158203125	2	508.261988	1014.50942	-0.14423	-7.3304E-05	-0.48735	-0.0002477	-0.63158	-0.00032101	508.2617687062169	47.818	1.5239	44.71	44.185	45.709	-3.1077					37	29	2	0	0	0	0.027433	1	2648	2648		64.207	18.255	1	89374			55111	7110	45503	45542	60182	60182					0.0027479391542328813
SRPVPKRELWI	11	Unmodified	_SRPVPKRELWI_					0	0	0			REV__ENST00000372476.7_1_1:43773103-43773491:+|nuORF	REV__ENST00000372476.7_1_1:43773103-43773491:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	460.9403381347656	3	460.941861	1379.80375	0.9912	0.00045688	-4.1734	-0.0019237	-3.1822	-0.0014668	460.939931944109	66.339	1.2721	63.393	62.959	64.231	-2.9459					62	24	4	0	0	0	0.72483	1	2726	2726		17.833	3.1395	1	124720	+		55112	25005	45504	45543	60183	60183					0.12904407405176244
SRPVRVAET	9	Unmodified	_SRPVRVAET_					0	0	0		nc|ENSG00000107954|O76050-2|NEURL1;ENSG00000107954|ENST00000369780|NEURL1	nc|ENSG00000107954|O76050-2|NEURL1	nc|ENSG00000107954|O76050-2|NEURL1	MULTI-MSMS	OvCa9_classI_Rep2	2	507.787841796875	2	507.788173	1013.56179	-0.71966	-0.00036543	0.16666	8.4628E-05	-0.553	-0.00028081	507.78818211844305	46.857	1.6349	44.147	43.646	45.281	-2.7097					89	32	4	0	0	0	0.59259	1	2831	2831		32.812	2.3088	1	755080			55113	2630	45505	45544	60184	60184					0.05555377049051913
SRPWALSPRP	10	Unmodified	_SRPWALSPRP_					0	0	0			REV__ENST00000566611.5_1_16:57786453-57787143:+|nuORF	REV__ENST00000566611.5_1_16:57786453-57787143:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	583.82373046875	2	583.825089	1165.63563	-1.0594	-0.00061849	-0.19412	-0.00011333	-1.2535	-0.00073182	583.8248978197831	107.73	1.1962	106.5	106.18	107.38	-1.234					69	22	4	0	0	0	0.47142	1	7652	7652		58.23	3.4536	1	399180	+		55114	27704	45506	45545	60185	60185					0.05943345211358064
SRQEGPPVN	9	Unmodified	_SRQEGPPVN_					0	0	0			REV__SF3B3|p.K976Dfs*14|1|0.12|ENSG00000189091|chr16:70567509-70567510|-/GACTATTTTACCATAATTTTTA|frameshift_variant	REV__SF3B3|p.K976Dfs*14|1|0.12|ENSG00000189091|chr16:70567509-70567510|-/GACTATTTTACCATAATTTTTA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	491.7814025878906	2	492.24888	982.483208	-1.0901	-0.00053659	3.7712	0.0018564	2.6811	0.0013198	492.25097974269266	85.15	0.93758	83.604	83.153	84.091	-1.5462					25	18	2	0	0	0	0.027441	1	7325	7325		49.442	0	1	14005	+		55115	22760	45507	45546	60186	60186					-0.008734752560371817
SRQGQLEQY	9	Unmodified	_SRQGQLEQY_					0	0	0			REV__ENST00000588439.1_1_19:36395473-36398510:-|nuORF	REV__ENST00000588439.1_1_19:36395473-36398510:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.8596801757812	2	554.772719	1107.53089	1.5157	0.00084084	2.0512	0.0011379	3.5668	0.0019788	555.2767201096036	147.23	0.29739	147.23	147.11	147.41	0					8	5	2	0	0	0	0.027462	1	17242	17242		26.693	3.6504	1	37160	+		55116	16494	45508	45547	60187	60187					-0.01857821055864406
SRQIKKFK	8	Unmodified	_SRQIKKFK_					0	0	0			REV__L1MDa_dup2778|chr7:47340719-47342131:-|2.305162096757514|0.4082244758708406|2.5|429.0|8|1|sense	REV__L1MDa_dup2778|chr7:47340719-47342131:-|2.305162096757514|0.4082244758708406|2.5|429.0|8|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.2749633789062	2	517.827101	1033.63965	-1.2534	-0.00064903	-2.1053	-0.0010902	-3.3587	-0.0017392	517.8259253036551	37.046	0.32055	37.046	36.931	37.251	0					9	6	2	0	0	0	0.028476	1	2010	2010		12.207	0	1	62010	+		55117	28436	45509	45548	60188	60188					0.12417434705071173
SRQLAIVA	8	Unmodified	_SRQLAIVA_					0	0	0			REV__IQCB1|p.E529Sfs*18|1|0.05|ENSG00000173226|chr3:121770557-121770558|-/AGCCTCCTGAGTAGCTGGGA|frameshift_variant	REV__IQCB1|p.E529Sfs*18|1|0.05|ENSG00000173226|chr3:121770557-121770558|-/AGCCTCCTGAGTAGCTGGGA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	430.2173156738281	2	429.263802	856.513051	-0.22435	-9.6305E-05	0.13966	5.995E-05	-0.084692	-3.6355E-05	429.2637788031652	44.648	0.98516	44.648	44.26	45.245	0					38	21	3	0	0	0	0.028476	1	3044	3044		8.8223	0	1	320880	+		55118	28311	45510	45549	60189	60189					0.07905508479939272
SRQLEDIL	8	Unmodified	_SRQLEDIL_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.8091735839844	2	487.269281	972.52401	-0.93099	-0.00045364	1.2755	0.0006215	0.34448	0.00016786	487.26979346884264	50.01	0.38845	50.01	49.856	50.245	0					11	8	2	0	0	0	0.028476	1	3781	3781		55.504	9.5523	1	213840			55119	1717	45511	45550	60190	60190					0.03664866063570571
SRQLLPVLL	9	Unmodified	_SRQLLPVLL_					0	0	0		nc|ENSG00000185615|Q13087-2|PDIA2;ENSG00000185615|ENST00000219406|PDIA2	nc|ENSG00000185615|Q13087-2|PDIA2	nc|ENSG00000185615|Q13087-2|PDIA2	MULTI-MSMS	OvCa9_classI_Rep2	2	519.8369750976562	2	519.837134	1037.65972	-0.16927	-8.7994E-05	-0.57443	-0.00029861	-0.7437	-0.00038661	519.8370651461269	115.21	1.1364	115.09	114.75	115.89	-0.11777					46	22	3	0	0	0	0.38529	1	10987	10987		53.351	7.3995	1	109550			55120	8267	45512	45551	60191	60191					0.1423918564505584
SRQLRGKVH	9	Unmodified	_SRQLRGKVH_					0	0	0			REV__tr|A0A553SR12|A0A553SR12_NIACICatalaseOS=NialliacirculansOX=1397GN=CEQ21_00175PE=3SV=1	REV__tr|A0A553SR12|A0A553SR12_NIACICatalaseOS=NialliacirculansOX=1397GN=CEQ21_00175PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.7911376953125	2	540.822881	1079.63121	0.019864	1.0743E-05	-0.45822	-0.00024782	-0.43836	-0.00023707	540.8226794689235	31.012	0.53033	31.012	30.781	31.311	0					20	10	4	0	0	0	0.027462	1	1273	1273		49.442	32.968	1	223340	+		55121	30679	45513	45552	60192	60192					0.09457880788477269
SRQPTGLRPL	10	Unmodified	_SRQPTGLRPL_					0	0	0			REV__ENSG00000119681|ENST00000261978|LTBP2	REV__ENSG00000119681|ENST00000261978|LTBP2	MULTI-MSMS	OvCa99_classI_Rep5	1	562.8321533203125	2	562.830372	1123.64619	0.81588	0.0004592	-1.3749	-0.00077385	-0.55904	-0.00031465	562.8296303486356	67.278	2.4843	67.278	66.7	69.184	0					188	61	5	0	0	0	0.28845	1	6241	6241		82.241	7.9855	1	92664000	+		55122	18458	45514	45553	60193	60193					0.08931327865798266
SRQQEFTL	8	Unmodified	_SRQQEFTL_					0	0	0			REV__nc|ENSG00000260916|Q9ULG6-4|CCPG1	REV__nc|ENSG00000260916|Q9ULG6-4|CCPG1	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.2451477050781	2	504.759081	1007.50361	-0.38305	-0.00019335	-1.9572	-0.00098793	-2.3403	-0.0011813	504.7581298455593	48.706	0.35488	48.706	48.585	48.94	0					10	7	2	0	0	0	0.028476	1	3602	3602		40.778	0	1	44723	+		55123	23565	45515	45554	60194	60194					0.00015695403772042482
SRQRAPLP	8	Unmodified	_SRQRAPLP_					0	0	0		nc|ENSG00000198198|Q5T011-5|SZT2;ENSG00000198198|ENST00000634258|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	OvCa9_classI_Rep2	2	462.7719421386719	2	462.772326	923.530098	-1.9809	-0.0009167	1.6802	0.00077755	-0.30068	-0.00013915	462.77307246916536	37.809	0.68848	35.1	34.781	35.469	-2.7097					48	13	5	0	0	0	0.66704	1	1719	1719		50.025	5.9077	1	1223600			55124	8795	45516	45555	60195	60195					0.0652742908575874
SRQRRRVQLMR	11	Unmodified	_SRQRRRVQLMR_					0	0	0		ENSG00000188760|ENST00000373883|TMEM198	ENSG00000188760|ENST00000373883|TMEM198	ENSG00000188760|ENST00000373883|TMEM198	MULTI-MSMS	OvCa9_classI_Rep3	3	495.9586181640625	3	495.960032	1484.85827	-6.9251	-0.0034346	4.2498	0.0021077	-2.6753	-0.0013269	495.96202181719514	160.27	3.1017	158.94	157.33	160.43	-1.3316					146	60	3	0	0	0	0.72552	1	13951	13951		8.7993	0.99479	1	58509			55125	8498	45517	45556	60196	60196					0.13523096004951185
SRQVLQEPD	9	Unmodified	_SRQVLQEPD_					0	0	0		ENSG00000104290|ENST00000240093|FZD3	ENSG00000104290|ENST00000240093|FZD3	ENSG00000104290|ENST00000240093|FZD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.8154296875	2	536.275095	1070.53564	1.876	0.001006	-0.94138	-0.00050484	0.93457	0.00050119	536.2742765141185	116.66	0.40291	116.66	116.32	116.73	0					11	8	2	0	0	0	0.027462	1	13346	13346		37.812	18.708	1	146930			55126	2362	45518	45557	60197	60197					0.0031906308690849983
SRQVPHPRP	9	Unmodified	_SRQVPHPRP_					0	0	0		ENST00000534320.5_1_11:607207-607396:+|nuORF	ENST00000534320.5_1_11:607207-607396:+|nuORF	ENST00000534320.5_1_11:607207-607396:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	537.3023681640625	2	537.301781	1072.58901	-2.0429	-0.0010977	1.5144	0.0008137	-0.52851	-0.00028397	537.3025976508426	51.263	1.5868	48.45	48.104	49.691	-2.8129					81	31	4	0	0	0	0.50149	1	3366	3366		42.396	1.618	1	305260			55127	13353	45519	45558	60198	60198					0.05561905380091048
SRQVSFSVL	9	Unmodified	_SRQVSFSVL_					0	0	0		ENST00000456143.1_22:16404699-16405137:+|nuORF	ENST00000456143.1_22:16404699-16405137:+|nuORF	ENST00000456143.1_22:16404699-16405137:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.78753662109375	2	511.785099	1021.55564	-0.17744	-9.0812E-05	3.0357	0.0015536	2.8582	0.0014628	511.78652454264744	116.29	2.3272	114.93	114.6	116.92	-1.3645					95	44	4	0	0	0	0.27001	1	10875	10875		66.429	0.6261	1	363420			55128	12107	45520	45559	60199	60199					0.04572858817527958
SRQYESLPA	9	Unmodified	_SRQYESLPA_					0	0	0		nc|ENSG00000057935|Q9BTC8-2|MTA3;ENSG00000057935|ENST00000405094|MTA3;ENST00000493983.1_1_2:42806261-42871303:+|nuORF	nc|ENSG00000057935|Q9BTC8-2|MTA3	nc|ENSG00000057935|Q9BTC8-2|MTA3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.3114624023438	2	525.764363	1049.51417	-1.3192	-0.0006936	0.95619	0.00050273	-0.36303	-0.00019087	525.7649600289043	70.732	0.29155	67.251	66.983	67.275	-3.4812					6	5	2	0	0	0	0.027462	1	5353	5353		21.96	4.5949	1	64392			55129	1239	45521	45560	60200	60200					-0.008603219417864238
SRRALPVA	8	Unmodified	_SRRALPVA_					0	0	0			REV__ENST00000532887.5_1_8:145582625-145582890:+|nuORF	REV__ENST00000532887.5_1_8:145582625-145582890:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	435.2594299316406	2	435.269419	868.524284	-0.10865	-4.7293E-05	0.24666	0.00010737	0.13801	6.0072E-05	435.2694727850068	52.835	0.49253	49.627	49.451	49.944	-3.208					13	9	2	0	0	0	0.028476	1	3215	3215		24.203	0	1	21896	+		55130	27246	45522	45561	60201	60201					0.08476330574092117
SRRANLIIP	9	Unmodified	_SRRANLIIP_					0	0	0		ENSG00000129925|ENST00000431232|PGAP6	ENSG00000129925|ENST00000431232|PGAP6	ENSG00000129925|ENST00000431232|PGAP6	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3230590820312	2	520.322183	1038.62981	-0.056752	-2.9529E-05	-0.23196	-0.00012069	-0.28871	-0.00015022	520.321910932652	59.379	1.3543	56.599	56.137	57.491	-2.7801					59	25	4	0	0	0	0.5811	1	4351	4351		34.173	0	1	379380			55131	3947	45523	45562	60202	60202					0.11204246699708165
SRRASPRRPR	10	Unmodified	_SRRASPRRPR_					0	0	0			REV__ENST00000322313.8_1_2:128459548-128459872:-|nuORF	REV__ENST00000322313.8_1_2:128459548-128459872:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8695678710938	2	619.868686	1237.72282	-3.1194	-0.0019336	4.2095	0.0026093	1.0901	0.00067571	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.67931	1	14814	14814		32.812	1.2826	1	806750	+		55132	24458	45524	45563	60203	60203					0.11346564205632603
SRRCSSTSP	9	Carbamidomethyl (C)	_SRRC(Carbamidomethyl (C))SSTSP_	SRRC(1)SSTSP		SRRC(82)SSTSP		0	1	0		nc|ENSG00000081377|O60729-2|CDC14B;nc|ENSG00000081377|O60729-3|CDC14B;nc|ENSG00000081377|O60729-4|CDC14B;ENSG00000081377|ENST00000375241|CDC14B	nc|ENSG00000081377|O60729-2|CDC14B	nc|ENSG00000081377|O60729-2|CDC14B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.6851196289062	2	519.243272	1036.47199	-0.4101	-0.00021294	4.0502	0.002103	3.6401	0.0018901	519.2453430323428	58.107	1.0579	54.762	54.189	55.247	-3.3449					27	20	2	0	0	0	0.027353	1	3827	3827		82.241	18.934	1	19959			55133	1660	45525	45564	60204	60204	11				-0.04478620621830487
SRRELVLR	8	Unmodified	_SRRELVLR_					0	0	0			REV__ENST00000374012.7_1_20:34359909-34389461:+|nuORF	REV__ENST00000374012.7_1_20:34359909-34389461:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7750854492188	2	514.819807	1027.62506	-0.31131	-0.00016027	2.5443	0.0013099	2.233	0.0011496	514.8205337210725	65.241	0.59109	65.241	64.955	65.546	0					26	14	3	0	0	0	0.028476	1	5964	5964		21.96	0	1	383710	+		55134	25054	45526	45565	60205	60205					0.1123536255693125
SRREQLRQ	8	Unmodified	_SRREQLRQ_					0	0	0			REV__ENSG00000130307|ENST00000252597|USHBP1	REV__ENSG00000130307|ENST00000252597|USHBP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.82861328125	2	536.802146	1071.58974	0.041895	2.249E-05	1.9044	0.0010223	1.9463	0.0010448	536.8036250879114	66.704	0.36777	66.704	66.372	66.739	0					11	8	2	0	0	0	0.028476	1	6155	6155		67.494	19.534	1	165640	+		55135	18939	45527	45566	60206	60206					0.05680700029142827
SRRETQGVCQ	10	Unmodified	_SRRETQGVCQ_					0	0	0			REV__ENSG00000164674|ENST00000611299|SYTL3	REV__ENSG00000164674|ENST00000611299|SYTL3	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.8102416992188	2	582.282928	1162.5513	-1.0505	-0.00061168	-0.049494	-2.882E-05	-1.1	-0.0006405	582.2828314068574	59.579	1.141	59.579	59.377	60.518	0					63	28	4	0	0	0	0.026994	1	5263	5263		32.812	8.2932	1	6552300	+		55136	21011	45528	45567	60207	60207					-0.023469736676815955
SRRGHLFHRRE	11	Unmodified	_SRRGHLFHRRE_					0	0	0		ENST00000261584.8_2_16:23647337-23647469:-|nuORF	ENST00000261584.8_2_16:23647337-23647469:-|nuORF	ENST00000261584.8_2_16:23647337-23647469:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.2988586425781	3	484.267742	1449.7814	0.14712	7.1244E-05	-1.5552	-0.00075311	-1.408	-0.00068187	484.2641638877547	62.557	0.94875	62.557	61.953	62.902	0					54	22	4	0	0	0	0.026302	1	5510	5510		12.433	0.50046	1	802160			55137	9869	45529	45568	60208	60208					0.07449620780130317
SRRGVPSFLVP	11	Unmodified	_SRRGVPSFLVP_					0	0	0			REV__ENST00000366678.4_1_1:229634943-229644011:-|nuORF	REV__ENST00000366678.4_1_1:229634943-229644011:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	606.859619140625	2	607.853847	1213.69314	1.4547	0.00088426	0.68676	0.00041745	2.1415	0.0013017	607.8538435199998	111.49	0.54321	111.49	111.24	111.79	0					24	11	3	0	0	0	0.025759	1	12692	12692		28.081	8.0847	1	435170	+		55138	16865	45530	45569	60209	60209					0.0948418741693331
SRRHHRLPSP	10	Unmodified	_SRRHHRLPSP_					0	0	0		ENST00000373095.5_1_9:130710445-130712742:-|nuORF	ENST00000373095.5_1_9:130710445-130712742:-|nuORF	ENST00000373095.5_1_9:130710445-130712742:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	621.2537231445312	2	621.849961	1241.68537	1.578	0.00098126	0.39852	0.00024782	1.9765	0.0012291	621.8506507201306	78.094	0.87167	78.094	77.422	78.294	0					26	20	2	0	0	0	0.027088	1	7914	7914		16.717	3.9057	1	242940			55139	10998	45531	45570	60210	60210					0.07419472940046035
SRRHLPHF	8	Unmodified	_SRRHLPHF_					0	0	0			REV__ENST00000560927.1_1_15:91083228-91137023:+|nuORF	REV__ENST00000560927.1_1_15:91083228-91137023:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.76904296875	2	525.291217	1048.56788	-0.42756	-0.0002246	-0.47485	-0.00024944	-0.90242	-0.00047403	525.2909015987573	60.499	0.37392	60.499	60.314	60.688	0					14	8	2	0	0	0	0.028476	1	5274	5274		27.882	7.8855	1	381170	+		55140	19689	45532	45571	60211	60211					0.04553940071218676
SRRIHILF	8	Unmodified	_SRRIHILF_					0	0	0		L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|41|2|sense	L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|41|2|sense	L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|41|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.2733764648438	2	521.319443	1040.62433	1.2964	0.00067584	0.14297	7.4533E-05	1.4394	0.00075037	521.3191910011391	118.51	0.4229	118.51	118.3	118.72	0					11	8	2	0	0	0	0.028476	1	13599	13599		12.959	0	1	45358			55141	14546	45533	45572	60212	60212					0.10564567907886158
SRRIHILF	8	Unmodified	_SRRIHILF_					0	0	0		L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|41|2|sense	L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|41|2|sense	L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|41|2|sense	MULTI-MATCH	OvCa9_classI_Rep3	3		2	521.319443	1040.62433	0.63094	0.00032892	-2.1233	-0.0011069	-1.4924	-0.00077802	521.3182072662844	119.49	0.6431	118.46	118.23	118.87	-1.0271	0.010915	-0.0016514	NaN	7.6903	14	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29035			55142	14546	45533	45572							0.10564567907886158
SRRIHILF	8	Unmodified	_SRRIHILF_					0	0	0		L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|41|2|sense	L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|41|2|sense	L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|41|2|sense	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	521.319443	1040.62433	-1.8021	-0.00093948	1.192	0.0006214	-0.61013	-0.00031807	521.3195843533656	119.72	0.5789	118.38	118.14	118.72	-1.3444	-0.071335	0.0018052	NaN	7.6903	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30005			55143	14546	45533	45572							0.10564567907886158
SRRILKCSPP	10	Unmodified	_SRRILKCSPP_					0	0	0		ENSG00000162302|ENST00000334205|RPS6KA4;nc|ENSG00000162302|O75676-2|RPS6KA4	ENSG00000162302|ENST00000334205|RPS6KA4	ENSG00000162302|ENST00000334205|RPS6KA4	MULTI-SECPEP	OvCa9_classI_Rep3	3	578.8560791015625	2	578.8346	1155.65465	-1.1198	-0.0006482	-3.5292	-0.0020428	-4.6491	-0.002691	578.8332323563967	73.926	0.54382	71.438	71.225	71.769	-2.4873					20	10	3	0	0	0	0.026826	1	3635	3635		29.17	0	1	38189			55144	6168	45534	45573	60213	60213					0.08304558510781135
SRRIRKVPL	9	Unmodified	_SRRIRKVPL_					0	0	0			REV__ENST00000331173.5_1_10:53459005-53459038:-|nuORF	REV__ENST00000331173.5_1_10:53459005-53459038:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	563.7938842773438	2	562.872374	1123.73019	1.6571	0.00093276	0.18682	0.00010516	1.844	0.0010379	562.8724029600896	87.446	0.9846	86.015	85.741	86.726	-1.4311					42	19	3	0	0	0	0.027462	1	7704	7704		17.365	0	1	65696	+		55145	24532	45535	45574	60214	60214					0.17327903753357532
SRRIVESI	8	Unmodified	_SRRIVESI_					0	0	0			REV__ENSG00000186967|ENST00000334058|KRTAP19-4	REV__ENSG00000186967|ENST00000334058|KRTAP19-4	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2558898925781	2	480.285266	958.555979	2.6567	0.001276	-0.19292	-9.2655E-05	2.4638	0.0011833	480.28572719101646	96.093	0.33987	96.093	95.913	96.253	0					10	7	2	0	0	0	0.028476	1	10520	10520		34.173	2.6427	1	78102	+		55146	22623	45536	45575	60215	60215					0.0750427853738529
SRRKFLFH	8	Unmodified	_SRRKFLFH_					0	0	0			REV__ENST00000418559.5_1_2:183594660-183605065:+|nuORF	REV__ENST00000418559.5_1_2:183594660-183605065:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.7835083007812	2	545.817067	1089.61958	1.5143	0.00082651	3.0952	0.0016894	4.6095	0.0025159	545.8185702369618	122.84	0.88103	122.84	122.49	123.37	0					42	18	3	0	0	0	0.028476	1	14113	14113		21.702	0	1	241290	+		55147	25572	45537	45576	60216	60216					0.07835683765142676
SRRKGGVL	8	Unmodified	_SRRKGGVL_					0	0	0			REV__ENSG00000133858|ENST00000378743|ZFC3H1	REV__ENSG00000133858|ENST00000378743|ZFC3H1	MULTI-SECPEP	OvCa99_classI_Rep5	1	437.2430114746094	2	436.774868	871.535184	0.195	8.5172E-05	-2.912	-0.0012719	-2.717	-0.0011867	436.77358777412024	41.659	0.34757	41.659	41.505	41.853	0					10	7	2	0	0	0	0.028476	1	2630	2630		11.511	0	1	35195	+		55148	19161	45538	45577	60217	60217					0.09427732948381617
SRRLFFFLFF	10	Unmodified	_SRRLFFFLFF_					0	0	0			REV__ENST00000524930.1_1_6:130504375-130535627:-|nuORF	REV__ENST00000524930.1_1_6:130504375-130535627:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	460.592529296875	3	460.592281	1378.75501	-0.29257	-0.00013475	-3.2532	-0.0014984	-3.5457	-0.0016331	460.5907513486629	104.77	1.6907	104.77	104.36	106.05	0					99	38	5	0	0	0	0.60504	1	11792	11792		41.427	7.505	1	6280900	+		55149	27107	45539	45578	60218	60218					0.0807853883604821
SRRLLLGAPD	10	Unmodified	_SRRLLLGAPD_					0	0	0		ENST00000531405.5_1_11:65338057-65338108:+|nuORF	ENST00000531405.5_1_11:65338057-65338108:+|nuORF	ENST00000531405.5_1_11:65338057-65338108:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.6334838867188	2	549.324922	1096.63529	-0.099564	-5.4693E-05	0.28755	0.00015796	0.18799	0.00010327	549.3249522158815	31.381	0.78766	31.381	31.218	32.006	0					33	15	4	0	0	0	0.026931	1	1354	1354		23.523	0	1	802870			55150	13306	45540	45579	60219	60219					0.0908392549151813
SRRLMQKE	8	Unmodified	_SRRLMQKE_					0	0	0			REV__ENSG00000184575|ENST00000332707|XPOT	REV__ENSG00000184575|ENST00000332707|XPOT	MULTI-MSMS	OvCa9_classI_Rep2	2	524.2884521484375	2	524.290025	1046.5655	0.32988	0.00017295	-3.879	-0.0020337	-3.5491	-0.0018608	524.2878628443616	44.341	1.6949	41.631	41.303	42.998	-2.7097					85	33	4	0	0	0	0.7202	1	2525	2525		39.253	0.44669	1	482610	+		55151	22441	45541	45580	60220	60220					0.04407723551230447
SRRLYYFF	8	Unmodified	_SRRLYYFF_					0	0	0		tr|A0A553SF24|A0A553SF24_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_08085PE=4SV=1	tr|A0A553SF24|A0A553SF24_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_08085PE=4SV=1	tr|A0A553SF24|A0A553SF24_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_08085PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	576.30126953125	2	576.303458	1150.59236	-1.0434	-0.00060129	-3.8136	-0.0021978	-4.857	-0.0027991	576.3011058911346	46.232	1.2388	43.522	43.25	44.489	-2.7097					69	24	4	0	0	0	0.62934	1	2760	2760		57.811	9.8518	1	340680			55152	32982	45542	45581	60221	60221					0.02309155434090826
SRRNYAPIL	9	Unmodified	_SRRNYAPIL_					0	0	0		tr|A0A553SUD2|A0A553SUD2_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_06755PE=4SV=1	tr|A0A553SUD2|A0A553SUD2_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_06755PE=4SV=1	tr|A0A553SUD2|A0A553SUD2_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_06755PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.865234375	2	545.311815	1088.60908	1.3365	0.0007288	2.4785	0.0013515	3.815	0.0020803	545.3122827844538	111.93	0.59691	111.93	111.56	112.16	0					26	12	3	0	0	0	0.027392	1	12758	12758		63.306	0	1	369190			55153	34595	45543	45582	60222	60222					0.06831656320036927
SRRPKMRPARR	11	Unmodified	_SRRPKMRPARR_					0	0	0		ENSG00000196421|ENST00000636176|C20orf204	ENSG00000196421|ENST00000636176|C20orf204	ENSG00000196421|ENST00000636176|C20orf204	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.2671203613281	3	470.949356	1409.82624	-0.32933	-0.0001551	-3.1203	-0.0014695	-3.4496	-0.0016246	470.9467369149803	49.198	0.5209	49.198	48.986	49.507	0					18	11	2	0	0	0	0.026187	1	3674	3674		24.276	3.9609	1	325170			55154	8608	45544	45583	60223	60223					0.1377172832180804
SRRRASTP	8	Unmodified	_SRRRASTP_					0	0	0			REV__ENST00000322224.8_1_4:682967-683156:-|nuORF	REV__ENST00000322224.8_1_4:682967-683156:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.25823974609375	2	465.765032	929.515511	-0.26375	-0.00012284	3.3217	0.0015471	3.0579	0.0014243	465.76631524355173	63.807	1.1116	60.332	59.868	60.98	-3.475					26	22	2	0	0	0	0.028476	1	4462	4462		40.778	14.085	1	72880	+		55155	24457	45545	45584	60224	60224					0.04793356937614135
SRRRIIKT	8	Unmodified	_SRRRIIKT_					0	0	0			REV__ENSG00000014164|ENST00000262577|ZC3H3	REV__ENSG00000014164|ENST00000262577|ZC3H3	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.30908203125	2	515.335624	1028.6567	-0.090418	-4.6596E-05	-3.1375	-0.0016169	-3.2279	-0.0016635	515.3359713003226	98.045	0.24132	97.152	97.023	97.264	-0.89305					8	4	2	0	0	0	0.028476	1	8884	8884		31.53	12.17	1	4640.8	+		55156	16512	45546	45585	60225	60225					0.14351355310918734
SRRRKREVQ	9	Unmodified	_SRRRKREVQ_					0	0	0		ENSG00000072840|ENST00000264956|EVC	ENSG00000072840|ENST00000264956|EVC	ENSG00000072840|ENST00000264956|EVC	MULTI-SECPEP	OvCa99_classI_Rep5	1	607.3463745117188	2	607.863069	1213.71158	1.5926	0.00096807	2.8293	0.0017198	4.4218	0.0026879	608.3657644052374	123.17	0.42316	123.17	123	123.42	0					10	8	2	0	0	0	0.027462	1	14212	14212		27.882	13.745	1	108680			55157	1482	45547	45586	60226	60226					0.11327742111507177
SRRRNNRH	8	Unmodified	_SRRRNNRH_					0	0	0		sp|Q6SW37|EP84_HCMVMEarlyphosphoproteinp84OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL112/UL113PE=3SV=1;sp|P17151|EP84_HCMVAEarlyphosphoproteinp84OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL112/UL113PE=1SV=2	sp|Q6SW37|EP84_HCMVMEarlyphosphoproteinp84OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL112/UL113PE=3SV=1	sp|Q6SW37|EP84_HCMVMEarlyphosphoproteinp84OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL112/UL113PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.330078125	2	548.303178	1094.5918	-1.2415	-0.00068071	-2.7886	-0.001529	-4.0301	-0.0022097	548.301525098654	45.639	1.2018	42.601	42.178	43.38	-3.0385					47	22	3	0	0	0	0.028476	1	2427	2427		38.806	13.356	1	158720			55158	32906	45548	45587	60227	60227					0.0482917355761856
SRRRNNRH	8	Unmodified	_SRRRNNRH_					0	0	0		sp|Q6SW37|EP84_HCMVMEarlyphosphoproteinp84OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL112/UL113PE=3SV=1;sp|P17151|EP84_HCMVAEarlyphosphoproteinp84OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL112/UL113PE=1SV=2	sp|Q6SW37|EP84_HCMVMEarlyphosphoproteinp84OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL112/UL113PE=3SV=1	sp|Q6SW37|EP84_HCMVMEarlyphosphoproteinp84OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL112/UL113PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	548.303178	1094.5918	0.12131	6.6515E-05	-4.7888	-0.0026257	-4.6675	-0.0025592	548.3005847212845	45.346	0.8526	42.637	42.398	43.25	-2.7097	0.017887	-0.0014792	NaN	47.916	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42064			55159	32906	45548	45587							0.0482917355761856
SRRRQGQRDL	10	Unmodified	_SRRRQGQRDL_					0	0	0		ENST00000467894.5_1_1:33790468-33797238:-|nuORF;nc|ENSG00000134686|Q8IXK0-3|PHC2;ENST00000485928.5_1_1:33791428-33799821:-|nuORF;nc|ENSG00000134686|Q8IXK0-2|PHC2;nc|ENSG00000134686|Q8IXK0-4|PHC2;nc|ENSG00000134686|Q8IXK0|PHC2;ENSG00000134686|ENST00000683057|PHC2	ENST00000467894.5_1_1:33790468-33797238:-|nuORF	ENST00000467894.5_1_1:33790468-33797238:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	424.8811950683594	3	424.572831	1270.69666	-0.23152	-9.8295E-05	1.1095	0.00047107	0.87801	0.00037278	424.57307463918875	54.78	0.76836	54.78	54.59	55.358	0					40	17	4	0	0	0	0.027006	1	4496	4496		24.232	1.6702	1	808840			55160	4317	45549	45588	60228	60228					0.0721425024353266
SRRRRKAAP	9	Unmodified	_SRRRRKAAP_					0	0	0			REV__ENST00000556821.5_1_14:23790934-23791033:+|nuORF	REV__ENST00000556821.5_1_14:23790934-23791033:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.2805786132812	2	549.341772	1096.66899	-0.21612	-0.00011872	-2.9917	-0.0016434	-3.2078	-0.0017622	549.3400717023056	122.25	1.1698	120.89	120.04	121.21	-1.3666					32	22	2	0	0	0	0.027462	1	11482	11482		16.473	7.6508	1	17036	+		55161	25349	45550	45589	60229	60229					0.124523917739225
SRRRRKAAP	9	Unmodified	_SRRRRKAAP_					0	0	0			REV__ENST00000556821.5_1_14:23790934-23791033:+|nuORF	REV__ENST00000556821.5_1_14:23790934-23791033:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	549.341772	1096.66899	0.80987	0.0004449	-5.2188	-0.0028669	-4.4089	-0.002422	549.3387629679054	121.8	0.3666	120.77	120.48	120.85	-1.0286	-0.057816	-0.0015892	NaN	16.473	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16933	+		55162	25349	45550	45589							0.124523917739225
SRRRRKAP	8	Unmodified	_SRRRRKAP_					0	0	0		ENST00000298355.7_1_14:51562262-51562502:-|nuORF	ENST00000298355.7_1_14:51562262-51562502:-|nuORF	ENST00000298355.7_1_14:51562262-51562502:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.2625122070312	2	513.823215	1025.63188	-0.15171	-7.7953E-05	2.8623	0.0014707	2.7106	0.0013928	513.824479367129	46.887	0.66018	46.887	46.676	47.336	0					32	14	3	0	0	0	0.028476	1	3378	3378		7.1934	0	1	889350			55163	10155	45551	45590	60230	60230					0.12008720228186576
SRRRRRGYG	9	Unmodified	_SRRRRRGYG_					0	0	0			REV__ENSG00000148926|ENST00000278175|ADM	REV__ENSG00000148926|ENST00000278175|ADM	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.2732543945312	2	582.334479	1162.6544	1.3758	0.00080117	-4.0587	-0.0023635	-2.6829	-0.0015623	582.331711261668	118.62	0.84998	118.62	118.39	119.24	0					26	17	3	0	0	0	0.027462	1	13641	13641		20.947	0	1	144180	+		55164	20137	45552	45591	60231	60231					0.07958319625799959
SRRRSGICR	9	Unmodified	_SRRRSGICR_					0	0	0		ENST00000444772.3_1_10:21805118-21806168:-|nuORF	ENST00000444772.3_1_10:21805118-21806168:-|nuORF	ENST00000444772.3_1_10:21805118-21806168:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	545.8052368164062	2	545.804165	1089.59378	-0.48875	-0.00026676	0.37181	0.00020293	-0.11694	-6.3828E-05	545.8042333820541	69.567	0.36458	69.567	69.347	69.712	0					24	8	3	0	0	0	0.45842	1	6622	6622		46.457	7.2039	1	5753500			55165	11963	45553	45592	60232	60232					0.052564662511940696
SRRRTRVAA	9	Unmodified	_SRRRTRVAA_					0	0	0			REV__sp|P16760|VP22_HCMVAProteinUL24OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL24PE=3SV=3	REV__sp|P16760|VP22_HCMVAProteinUL24OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL24PE=3SV=3	MULTI-MSMS	OvCa99_classI_Rep5	1	536.82861328125	2	536.825955	1071.63736	-0.56521	-0.00030342	2.1659	0.0011627	1.6007	0.00085929	536.827110025536	66.307	1.2715	66.307	65.984	67.255	0					80	31	5	0	0	0	0.3249	1	6155	6155		60.118	0.18749	1	21245000	+		55166	29382	45554	45593	60233	60233					0.10440399019989854
SRRSHRLPTR	10	Unmodified	_SRRSHRLPTR_					0	0	0		ENSG00000172938|ENST00000309106|MRGPRD	ENSG00000172938|ENST00000309106|MRGPRD	ENSG00000172938|ENST00000309106|MRGPRD	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.368408203125	2	633.368518	1264.72248	-2.0264	-0.0012835	3.199	0.0020262	1.1726	0.00074268	633.3704245475564	148.87	1.0967	147.43	146.93	148.02	-1.4344					53	22	3	0	0	0	0.79213	1	14646	14646		19.997	4.355	1	50822			55167	7333	45555	45594	60234	60234					0.1007114448577795
SRRSLPCL	8	Unmodified	_SRRSLPCL_					0	0	0		ENSG00000134343|ENST00000256737|ANO3	ENSG00000134343|ENST00000256737|ANO3	ENSG00000134343|ENST00000256737|ANO3	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.75946044921875	2	466.260736	930.50692	0.14148	6.5967E-05	-0.61517	-0.00028683	-0.47369	-0.00022086	466.2604166711251	32.773	0.73254	32.773	32.453	33.186	0					26	14	3	0	0	0	0.028476	1	1450	1450		44.117	0	1	1091300			55168	4288	45556	45595	60235	60235					0.038886669767634885
SRRSQEREIYE	11	Unmodified	_SRRSQEREIYE_					0	0	0			REV__ENSG00000103540|ENST00000694978|CCP110	REV__ENSG00000103540|ENST00000694978|CCP110	MULTI-SECPEP	OvCa9_classI_Rep3	3	484.7981262207031	3	484.911178	1451.7117	-0.737	-0.00035738	2.285	0.001108	1.548	0.00075063	484.91220957031993	97.994	1.4838	96.235	95.865	97.349	-1.7595					58	28	3	0	0	0	0.02595	1	6499	6499		11.455	0	1	52115	+		55169	17624	45557	45596	60236	60236					0.00391652530220199
SRRSQEREIYE	11	Unmodified	_SRRSQEREIYE_					0	0	0			REV__ENSG00000103540|ENST00000694978|CCP110	REV__ENSG00000103540|ENST00000694978|CCP110	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.7998046875	3	484.911178	1451.7117	-0.055351	-2.684E-05	1.7544	0.00085074	1.6991	0.0008239	485.2464877982035	98.422	1.3362	96.044	95.822	97.158	-2.3786					53	25	3	0	0	0	0.02595	1	8746	8746		21.032	0	1	61629	+		55170	17624	45557	45596	60237	60237					0.00391652530220199
SRRTEKQRLA	10	Unmodified	_SRRTEKQRLA_					0	0	0			REV__ENSG00000103404|ENST00000219689|USP31	REV__ENSG00000103404|ENST00000219689|USP31	MULTI-MSMS	OvCa9_classI_Rep4_	4	622.8658447265625	2	622.862734	1243.71092	4.0056	0.002495	1.6127	0.0010045	5.6183	0.0034994	622.8636174332638	131.98	1.7037	130.48	130.08	131.78	-1.5014					90	33	4	0	0	0	0.73378	1	12758	12758		26.693	2.1737	1	330550	+		55171	17615	45558	45597	60238	60238					0.09880902671807235
SRRTRPKK	8	Unmodified	_SRRTRPKK_					0	0	0			REV__nc|ENSG00000139218|Q99590-2|SCAF11	REV__nc|ENSG00000139218|Q99590-2|SCAF11	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.7930908203125	2	514.825424	1027.63629	-0.24962	-0.00012851	1.29	0.00066414	1.0404	0.00053563	514.8256374223598	76.052	1.7078	73.68	73.112	74.819	-2.3715					82	32	4	0	0	0	0.028476	1	4008	4008		19.36	0	1	82531	+		55172	19598	45559	45598	60239	60239					0.12358184651088777
SRRVKEKHSI	10	Unmodified	_SRRVKEKHSI_					0	0	0			REV__ENSG00000198826|ENST00000361627|ARHGAP11A	REV__ENSG00000198826|ENST00000361627|ARHGAP11A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.9059143066406	3	413.914194	1238.72075	1.2467	0.00051601	-1.8864	-0.00078079	-0.63969	-0.00026478	413.9135779514453	35.864	0.39913	33.015	32.839	33.238	-2.849					9	7	2	0	0	0	0.027253	1	1172	1172		20.03	0	1	15325	+		55173	23070	45560	45599	60240	60240					0.11094090677170243
SRRVKRRE	8	Unmodified	_SRRVKRRE_					0	0	0		ENSG00000153446|ENST00000472572|C16orf89;nc|nan|Q6UX73|C16orf89	ENSG00000153446|ENST00000472572|C16orf89	ENSG00000153446|ENST00000472572|C16orf89	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.9375	2	543.83378	1085.65301	-1.6021	-0.00087127	-2.2115	-0.0012027	-3.8136	-0.0020739	543.8323668345975	44.755	1.1314	41.716	41.464	42.595	-3.0385					43	21	3	0	0	0	0.028476	1	2273	2273		21.96	3.6978	1	103550			55174	5682	45561	45600	60241	60241					0.11360685537033532
SRRVKRRE	8	Unmodified	_SRRVKRRE_					0	0	0		ENSG00000153446|ENST00000472572|C16orf89;nc|nan|Q6UX73|C16orf89	ENSG00000153446|ENST00000472572|C16orf89	ENSG00000153446|ENST00000472572|C16orf89	MULTI-MATCH	OvCa9_classI_Rep2	2		2	543.83378	1085.65301	-0.21359	-0.00011616	-3.868	-0.0021035	-4.0815	-0.0022197	543.8316178590755	44.536	0.84515	41.827	41.552	42.398	-2.7097	0.055055	-0.00082915	NaN	21.96	31	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51277			55175	5682	45561	45600							0.11360685537033532
SRRVRLQL	8	Unmodified	_SRRVRLQL_					0	0	0		ENSG00000233493|ENST00000444469|TMEM238	ENSG00000233493|ENST00000444469|TMEM238	ENSG00000233493|ENST00000444469|TMEM238	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.8225708007812	2	514.327799	1026.64105	0.35123	0.00018065	2.58	0.001327	2.9312	0.0015076	514.3285363418532	74.158	0.57025	74.158	73.907	74.478	0					26	14	3	0	0	0	0.028476	1	7349	7349		31.955	0	1	1435800			55176	9295	45562	45601	60242	60242					0.12879068793859005
SRRVWELLMLL	11	Unmodified	_SRRVWELLMLL_					0	0	0		XPO1-USP34|2|fusion;USP34|p.K3306Nfs*3|1|0.18|ENSG00000115464|chr2:61189025-61189025|T/-|frameshift_variant;nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;XPO1-USP34|3|fusion	XPO1-USP34|2|fusion	XPO1-USP34|2|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	472.77459716796875	3	472.611235	1414.81188	-0.43205	-0.00020419	-2.904	-0.0013724	-3.336	-0.0015766	472.60993741338945	69.718	0.49651	67.147	66.865	67.361	-2.5707					11	9	2	0	0	0	0.026068	1	5550	5550		16.53	10.529	1	13932			55177	36309	45563	45602	60243	60243					0.12106218330291085
SRRWHFYRRYV	11	Unmodified	_SRRWHFYRRYV_					0	0	0			REV__nc|ENSG00000196371|P22083-2|FUT4	REV__nc|ENSG00000196371|P22083-2|FUT4	MULTI-MSMS	OvCa9_classI_Rep2	2	542.6218872070312	3	542.623525	1624.84875	0.037685	2.0449E-05	-2.1944	-0.0011908	-2.1568	-0.0011703	542.6223764962355	71.226	1.989	68.719	68.281	70.27	-2.5071					125	37	6	0	0	0	0.72575	1	5741	5741		5.6988	0.28586	1	990210	+		55178	22818	45564	45603	60244	60244					0.06131650991051174
SRRWHFYRRYV	11	Unmodified	_SRRWHFYRRYV_					0	0	0			REV__nc|ENSG00000196371|P22083-2|FUT4	REV__nc|ENSG00000196371|P22083-2|FUT4	MULTI-SECPEP	OvCa9_classI_Rep3	3	542.810302734375	3	542.623525	1624.84875	0.55961	0.00030366	-2.5992	-0.0014104	-2.0396	-0.0011067	542.6220727652757	71.468	2.3255	68.865	68.584	70.909	-2.6023					160	46	6	0	0	0	0.026472	1	3553	3553		5.1424	2.1164	1	1802800	+		55179	22818	45564	45603	60245	60245					0.06131650991051174
SRSAGVPNQ	9	Unmodified	_SRSAGVPNQ_					0	0	0			REV__ENSG00000007306|ENST00000401731|CEACAM7	REV__ENSG00000007306|ENST00000401731|CEACAM7	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.7942199707031	2	458.235773	914.456993	0.48397	0.00022177	-3.2186	-0.0014749	-2.7347	-0.0012531	458.2343378383475	45.949	0.74634	45.949	45.496	46.242	0					25	16	2	0	0	0	0.027425	1	3158	3158		51.193	7.0759	1	278440	+		55180	16433	45565	45604	60246	60246					-0.0036574442752908
SRSDMAQNL	9	Unmodified	_SRSDMAQNL_					0	0	0		ENST00000546217.1_1_12:7079496-7079730:-|nuORF;ENST00000542294.1_1_12:7079357-7079730:-|nuORF;ENST00000544134.5_1_12:7077746-7079730:-|nuORF;ENST00000543465.5_1_12:7077022-7079730:-|nuORF	ENST00000546217.1_1_12:7079496-7079730:-|nuORF	ENST00000546217.1_1_12:7079496-7079730:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.2894592285156	2	511.240198	1020.46584	-0.71618	-0.00036614	-2.3982	-0.001226	-3.1144	-0.0015922	511.23880374612594	79.914	0.97246	77.163	76.797	77.769	-2.7514					37	19	2	0	0	0	0.027462	1	6575	6575		39.253	11.371	1	102310			55181	13477	45566	45605	60247	60247					-0.043571388533678146
SRSDSDGSR	9	Unmodified	_SRSDSDGSR_					0	0	0			REV__tr|A0A553SSJ2|A0A553SSJ2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03255PE=4SV=1	REV__tr|A0A553SSJ2|A0A553SSJ2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03255PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.79180908203125	2	483.715402	965.41625	-0.70747	-0.00034222	2.0842	0.0010082	1.3767	0.00066594	483.7163145809521	50.454	0.48677	50.454	50.288	50.775	0					17	10	2	0	0	0	0.027462	1	3826	3826		14.865	6.6336	1	139570	+		55182	30841	45567	45606	60248	60248					-0.06784130537789679
SRSERDGGS	9	Unmodified	_SRSERDGGS_					0	0	0		ENSG00000140829|ENST00000268482|DHX38;DHX38|p.D323Ifs*6|1|0.47|ENSG00000140829|chr16:72099738-72099738|G/-|frameshift_variant	ENSG00000140829|ENST00000268482|DHX38	ENSG00000140829|ENST00000268482|DHX38	MULTI-SECPEP	OvCa99_classI_Rep5	1	476.2514343261719	2	475.717944	949.421336	1.2335	0.0005868	1.7796	0.00084661	3.0132	0.0014334	475.718529519991	132.72	0.33698	132.72	132.56	132.89	0					10	6	2	0	0	0	0.027462	1	15414	15414		29.15	3.6994	1	48035			55183	4875	45568	45607	60249	60249					-0.05539826675169479
SRSFKRQCT	9	Unmodified	_SRSFKRQCT_					0	0	0			REV__nc|ENSG00000184937|P19544-8|WT1	REV__nc|ENSG00000184937|P19544-8|WT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.2962036132812	2	556.785107	1111.55566	-0.52619	-0.00029297	-0.53113	-0.00029573	-1.0573	-0.0005887	556.7845059492656	28.365	0.44786	28.365	28.14	28.588	0					14	8	3	0	0	0	0.027462	1	937	937		32.812	8.6097	1	83872	+		55184	22461	45569	45608	60250	60250					0.0043453554587813414
SRSGPPQRTG	10	Unmodified	_SRSGPPQRTG_					0	0	0			REV__chr19:11342997-11346208|163|20.74|0.0|20.98|-|2|None,TMEM205|2	REV__chr19:11342997-11346208|163|20.74|0.0|20.98|-|2|None,TMEM205|2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.7477416992188	2	521.773054	1041.53155	-1.7835	-0.0009306	-1.4769	-0.0007706	-3.2604	-0.0017012	521.7721646407562	127.11	0.79253	125.68	125.39	126.19	-1.4357					34	15	3	0	0	0	0.027117	1	12170	12170		21.686	0	1	28649	+		55185	15960	45570	45609	60251	60251					0.012450183838609519
SRSGTYSS	8	Unmodified	_SRSGTYSS_					0	0	0		ENST00000476744.5_1_3:156866032-156867533:-|nuORF;ENST00000470121.5_1_3:156866032-156869342:-|nuORF;ENST00000474539.5_1_3:156866032-156868247:-|nuORF;ENSG00000163660|ENST00000295926|CCNL1	ENST00000476744.5_1_3:156866032-156867533:-|nuORF	ENST00000476744.5_1_3:156866032-156867533:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	423.5739440917969	2	422.693407	843.37226	-0.51332	-0.00021698	3.2063	0.0013553	2.693	0.0011383	422.6937183461858	41.92	0.30172	41.92	41.766	42.068	0					10	6	2	0	0	0	0.028476	1	2646	2646		18.324	3.4595	1	55554			55186	6343	45571	45610	60252	60252					-0.05569114964134769
SRSGVRKL	8	Unmodified	_SRSGVRKL_					0	0	0		nc|ENSG00000293505|Q96P88|GNRHR2;ENST00000361928.2_2_1:145510914-145515697:-|nuORF;ENST00000604273.1_2_1:145515140-145515565:-|nuORF;ENST00000312753.9_2_1:145510914-145515950:-|nuORF	nc|ENSG00000293505|Q96P88|GNRHR2	nc|ENSG00000293505|Q96P88|GNRHR2	MULTI-MSMS	OvCa9_classI_Rep4_	4	451.7802734375	2	451.780151	901.545748	2.6917	0.0012161	-2.6708	-0.0012066	0.020856	9.4221E-06	451.7788715133923	137.54	1.2376	136	135.67	136.9	-1.5437					54	27	4	0	0	0	0.73938	1	13390	13390		31.955	0	1	51174			55187	15407	45572	45611	60253	60253					0.09103715602793727
SRSHPGQGR	9	Unmodified	_SRSHPGQGR_					0	0	0		ENSG00000137078|ENST00000259608|SIT1	ENSG00000137078|ENST00000259608|SIT1	ENSG00000137078|ENST00000259608|SIT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.72412109375	2	491.252289	980.490024	-0.99699	-0.00048977	3.4425	0.0016911	2.4455	0.0012014	491.25386739880105	37.317	0.60046	37.317	37.114	37.714	0					25	12	3	0	0	0	0.027461	1	2023	2023		25.574	9.1009	1	285970			55188	4554	45573	45612	60254	60254					-0.001001175848045932
SRSHQELHREL	11	Unmodified	_SRSHQELHREL_					0	0	0		nc|ENSG00000168309|O95990-2|FAM107A;ENSG00000168309|ENST00000360997|FAM107A;nc|ENSG00000168309|O95990-3|FAM107A;nc|ENSG00000168309|O95990-4|FAM107A	nc|ENSG00000168309|O95990-2|FAM107A	nc|ENSG00000168309|O95990-2|FAM107A	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.2784729003906	3	464.576129	1390.70656	0.095436	4.4337E-05	2.3734	0.0011026	2.4688	0.001147	464.57717532168107	82.883	0.91068	81.285	81.01	81.921	-1.5989					34	18	3	0	0	0	0.025908	1	7084	7084		21.78	0	1	50683			55189	6891	45574	45613	60255	60255					0.026833934582327856
SRSKRTRGSV	10	Unmodified	_SRSKRTRGSV_					0	0	0		ENST00000487580.1_1_3:169683796-169683949:-|nuORF	ENST00000487580.1_1_3:169683796-169683949:-|nuORF	ENST00000487580.1_1_3:169683796-169683949:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3295288085938	2	567.328528	1132.6425	-0.48412	-0.00027465	2.8095	0.0015939	2.3253	0.0013192	567.3299446868054	145.54	4.8872	144.11	142.68	147.57	-1.4357					247	95	4	0	0	0	0.762	1	14407	14407		23.523	0.48021	1	208760			55190	12649	45575	45614	60256	60256					0.08148658091931793
SRSLRKTL	8	Unmodified	_SRSLRKTL_					0	0	0		ENST00000425115.1_1_3:44751367-44751973:-|nuORF	ENST00000425115.1_1_3:44751367-44751973:-|nuORF	ENST00000425115.1_1_3:44751367-44751973:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	480.80072021484375	2	480.801083	959.587613	-4.4906	-0.0021591	4.3396	0.0020865	-0.15096	-7.2581E-05	480.8030459689351	151.04	2.008	150.08	149.7	151.71	-0.95647					103	39	4	0	0	0	0.72896	1	12833	12833		37.159	1.9584	1	1013500			55191	11716	45576	45615	60257	60257					0.10620271291338668
SRSLSPGRA	9	Unmodified	_SRSLSPGRA_					0	0	0		ENSG00000099308|ENST00000687212|MAST3;nc|ENSG00000099308|O60307|MAST3;ENST00000608648.1_1_19:18220994-18239762:+|nuORF	ENSG00000099308|ENST00000687212|MAST3	ENSG00000099308|ENST00000687212|MAST3	MSMS	OvCa99_classI_Rep5	1	465.75921630859375	2	465.759415	929.504277	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.895	1	27.895	27.395	28.395	0								0	0	0	0.17298	1	864	864		44.377	0.26039	1				55192	1967	45577	45616	60258	60258					0.03670534843467976
SRSLVLNRL	9	Unmodified	_SRSLVLNRL_					0	0	0		ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	ENSG00000014164|ENST00000262577|ZC3H3	MULTI-MSMS	OvCa99_classI_Rep5	1	529.3274536132812	2	529.327465	1056.64038	0.7673	0.00040616	0.035094	1.8576E-05	0.8024	0.00042473	529.3276283582339	66.977	0.67969	66.977	66.619	67.298	0					48	16	4	0	0	0	0.44248	1	6240	6240		47.96	8.7067	1	3326600			55193	996	45578	45617	60259	60259					0.11432229354136325
SRSMEARISD	10	Unmodified	_SRSMEARISD_					0	0	0			REV__ENST00000559720.5_1_15:45003705-45007919:+|nuORF	REV__ENST00000559720.5_1_15:45003705-45007919:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	575.3097534179688	2	576.277312	1150.54007	-1.0373	-0.00059775	3.4569	0.0019921	2.4196	0.0013944	576.7808676369149	98.487	0.54246	97.594	97.264	97.807	-0.89306					9	6	2	0	0	0	0.026494	1	8955	8955		87.696	18.069	1	17716	+		55194	27602	45579	45618	60260	60260					-0.02917795761823072
SRSMGVVPCSE	11	Unmodified	_SRSMGVVPCSE_					0	0	0			REV__nc|ENSG00000130294|Q12756|KIF1A	REV__nc|ENSG00000130294|Q12756|KIF1A	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.8140869140625	2	576.262816	1150.51108	1.9628	0.0011311	1.3856	0.00079849	3.3484	0.0019296	576.2631913259545	95.158	0.33669	95.158	94.992	95.328	0					13	7	2	0	0	0	0.025445	1	10399	10399		28.577	6.891	1	280120	+		55195	18936	45580	45619	60261	60261					-0.058156563824695695
SRSMQRSLP	9	Unmodified	_SRSMQRSLP_					0	0	0			REV__ENST00000259371.6_1_9:124546048-124546174:+|nuORF	REV__ENST00000259371.6_1_9:124546048-124546174:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.8140869140625	2	531.279657	1060.54476	1.8474	0.0009815	-0.21183	-0.00011254	1.6356	0.00086896	531.2790338241405	128.2	1.0734	128.2	127.67	128.75	0					37	22	3	0	0	0	0.027462	1	14888	14888		9.1829	0	1	132620	+		55196	23917	45581	45620	60262	60262					0.01691133171607362
SRSNIARHL	9	Unmodified	_SRSNIARHL_					0	0	0		ENST00000565499.1_1_16:21658349-21663919:-|nuORF;ENSG00000140749|ENST00000268389|IGSF6	ENST00000565499.1_1_16:21658349-21663919:-|nuORF	ENST00000565499.1_1_16:21658349-21663919:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	527.2994384765625	2	527.299239	1052.58392	-0.11745	-6.193E-05	-0.57555	-0.00030348	-0.69299	-0.00036541	527.2990368309628	31.832	1.0912	31.832	31.608	32.7	0					44	21	5	0	0	0	0.3249	1	1336	1336		60.118	14.166	1	1199400			55197	4873	45582	45621	60263	60263					0.05973601517462157
SRSPLRQRKV	10	Unmodified	_SRSPLRQRKV_					0	0	0		ENST00000550858.1_1_12:42681771-42682359:+|nuORF	ENST00000550858.1_1_12:42681771-42682359:+|nuORF	ENST00000550858.1_1_12:42681771-42682359:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	409.5876159667969	3	409.586189	1225.73674	1.9489	0.00079826	1.4877	0.00060932	3.4366	0.0014076	409.5866589829611	66.281	1.6712	63.335	62.959	64.63	-2.9459					68	32	4	0	0	0	0.80369	1	2718	2718		18.531	1.8137	1	144930			55198	13593	45583	45622	60264	60264					0.13289796914068575
SRSPQLSPL	9	Unmodified	_SRSPQLSPL_					0	0	0			REV__ENSG00000251322|ENST00000262795|SHANK3	REV__ENSG00000251322|ENST00000262795|SHANK3	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.7781066894531	2	492.777274	983.539994	0.050489	2.488E-05	-0.088694	-4.3706E-05	-0.038205	-1.8826E-05	492.7770261100685	76.331	1.8631	73.392	72.985	74.848	-2.9389					78	38	3	0	0	0	0.44568	1	6069	6069		47.657	3.5405	1	1161800	+		55199	23498	45584	45623	60265	60265					0.047565723004936444
SRSPRLQIP	9	Unmodified	_SRSPRLQIP_					0	0	0		ENST00000473231.5_1_1:157666813-157667212:-|nuORF;nc|ENSG00000160856|Q96P31-7|FCRL3;ENSG00000160856|ENST00000368184|FCRL3;nc|ENSG00000160856|Q96P31-3|FCRL3;nc|ENSG00000160856|Q96P31-6|FCRL3	ENST00000473231.5_1_1:157666813-157667212:-|nuORF	ENST00000473231.5_1_1:157666813-157667212:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.8348999023438	2	527.311815	1052.60908	-1.4061	-0.00074145	4.0712	0.0021468	2.6651	0.0014054	527.3139610566948	70.692	1.3585	67.211	66.442	67.8	-3.4812					40	27	2	0	0	0	0.027402	1	5399	5399		76.774	0	1	268860			55200	6097	45585	45624	60266	60266					0.08487656320039605
SRSQVPIIL	9	Unmodified	_SRSQVPIIL_					0	0	0		ENSG00000153012|ENST00000382114|LGI2	ENSG00000153012|ENST00000382114|LGI2	ENSG00000153012|ENST00000382114|LGI2	MULTI-MSMS	OvCa9_classI_Rep3	3	506.8109436035156	2	506.811116	1011.60768	-1.285	-0.00065125	-0.29635	-0.00015019	-1.5813	-0.00080144	506.8109472666925	100.58	3.0909	98.975	98.659	101.75	-1.6053					152	59	4	0	0	0	0.13482	1	6820	6820		87.754	5.4493	1	2966100			55201	5654	45586	45625	60267	60267					0.10234022231293238
SRSREGAF	8	Unmodified	_SRSREGAF_					0	0	0		ENST00000608012.1_1_7:5468569-5468947:+|nuORF	ENST00000608012.1_1_7:5468569-5468947:+|nuORF	ENST00000608012.1_1_7:5468569-5468947:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	455.210693359375	2	455.230491	908.446428	0.6324	0.00028789	3.7869	0.0017239	4.4193	0.0020118	455.2319203003402	72.026	0.45666	72.026	71.792	72.249	0					24	10	3	0	0	0	0.028476	1	6965	6965		33.516	5.2613	1	591720			55202	14292	45587	45626	60268	60268					-0.011457270819505538
SRSSRPTQ	8	Unmodified	_SRSSRPTQ_					0	0	0			REV__ENST00000511624.1_1_5:108744869-108744998:-|nuORF	REV__ENST00000511624.1_1_5:108744869-108744998:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	460.2049255371094	2	459.741222	917.467892	1.9254	0.00088518	-2.9211	-0.001343	-0.99575	-0.00045779	459.7397559418485	82.013	0.65704	82.013	81.694	82.351	0					25	15	2	0	0	0	0.028476	1	8509	8509		8.6937	0	1	278010	+		55203	26961	45588	45627	60269	60269					0.005856579467717893
SRSSRPTQ	8	Unmodified	_SRSSRPTQ_					0	0	0			REV__ENST00000511624.1_1_5:108744869-108744998:-|nuORF	REV__ENST00000511624.1_1_5:108744869-108744998:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	459.741222	917.467892	-1.0929	-0.00050243	4.0324	0.0018539	2.9396	0.0013514	459.7430341233947	84.643	0.87811	82.382	82.067	82.945	-2.261	0.1846	0.0024997	NaN	8.6937	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41097	+		55204	26961	45588	45627							0.005856579467717893
SRSSVIVLVF	10	Unmodified	_SRSSVIVLVF_					0	0	0		ENST00000551747.1_1_19:16652231-16653189:-|nuORF	ENST00000551747.1_1_19:16652231-16653189:-|nuORF	ENST00000551747.1_1_19:16652231-16653189:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8290405273438	2	553.832049	1105.64954	-2.2198	-0.0012294	-1.4062	-0.0007788	-3.626	-0.0020082	553.8311075714116	139.08	3.9663	138.02	135.98	139.95	-1.0595					202	80	4	0	0	0	0.74374	1	11200	11200		25.574	2.5316	1	74733			55205	13604	45589	45628	60270	60270					0.10094577919812764
SRSTAQADL	9	Unmodified	_SRSTAQADL_					0	0	0			REV__nc|ENSG00000163520|P98095|FBLN2	REV__nc|ENSG00000163520|P98095|FBLN2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.5791931152344	2	474.740888	947.467223	0.61285	0.00029095	3.4788	0.0016515	4.0917	0.0019425	474.74245842149185	78.597	1.276	75.846	75.474	76.75	-2.7514					45	26	3	0	0	0	0.027453	1	6410	6410		23.523	7.0495	1	364750	+		55206	20845	45590	45629	60271	60271					-0.00861181492950891
SRSVPQIKN	9	Unmodified	_SRSVPQIKN_					0	0	0		RFX7|p.Q1124Nfs*5|1|0.19|ENSG00000181827|chr15:56094059-56094068|GCTTCTTTGA/-|frameshift_variant;nc|ENSG00000181827|Q2KHR2-1|RFX7;nc|ENSG00000181827|Q2KHR2-2|RFX7;ENSG00000181827|ENST00000559447|RFX7;RFX7|p.T435Nfs*16|1|0.15|ENSG00000181827|chr15:56096135-56096136|-/C|frameshift_variant	RFX7|p.Q1124Nfs*5|1|0.19|ENSG00000181827|chr15:56094059-56094068|GCTTCTTTGA/-|frameshift_variant	RFX7|p.Q1124Nfs*5|1|0.19|ENSG00000181827|chr15:56094059-56094068|GCTTCTTTGA/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	514.7959594726562	2	514.795998	1027.57744	-0.55477	-0.00028559	0.14687	7.5606E-05	-0.4079	-0.00020999	514.7959863058084	38.995	0.44912	38.995	38.793	39.242	0					16	9	2	0	0	0	0.40667	1	2262	2262		51.335	3.6781	1	631170			55207	7958	45591	45630	60272	60272					0.06475663566084222
SRTALRRAQRR	11	Unmodified	_SRTALRRAQRR_					0	0	0			REV__ENST00000327705.13_1_5:180486290-180486374:+|nuORF	REV__ENST00000327705.13_1_5:180486290-180486374:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	457.60809326171875	3	457.611508	1369.8127	-3.7462	-0.0017143	-3.9984	-0.0018297	-7.7446	-0.003544	457.60971240856696	157.06	2.9403	156.83	155.39	158.33	-0.22696					220	89	3	0	0	0	0.72511	1	15976	15976		14.086	1.8793	1	46638	+		55208	24501	45592	45631	60273	60273					0.14258193814202968
SRTCLGGSRRG	11	Unmodified	_SRTCLGGSRRG_					0	0	0		ENST00000317613.10_1_9:116303752-116304061:+|nuORF	ENST00000317613.10_1_9:116303752-116304061:+|nuORF	ENST00000317613.10_1_9:116303752-116304061:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	575.2991333007812	2	575.298913	1148.58327	-0.91232	-0.00052485	-0.093594	-5.3844E-05	-1.0059	-0.0005787	575.2987938975226	98.512	0.72591	96.752	96.417	97.143	-1.7595					43	13	4	0	0	0	0.54114	1	6592	6592		50.034	0.49747	1	1521200			55209	10356	45593	45632	60274	60274					0.014924388060990168
SRTDQGLHL	9	Unmodified	_SRTDQGLHL_					0	0	0		TOPORS|p.S774Rfs*14|1|0.06|ENSG00000197579|chr9:32542203-32542203|A/-|frameshift_variant	TOPORS|p.S774Rfs*14|1|0.06|ENSG00000197579|chr9:32542203-32542203|A/-|frameshift_variant	TOPORS|p.S774Rfs*14|1|0.06|ENSG00000197579|chr9:32542203-32542203|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	513.7684936523438	2	513.76998	1025.52541	0.35882	0.00018435	-1.1174	-0.00057408	-0.75858	-0.00038974	513.7694032910385	45.434	1.9629	45.434	45.202	47.165	0					96	44	5	0	0	0	0.22961	1	3130	3130		71.296	14.575	1	21758000			55210	32975	45594	45633	60275	60275					0.013665001523577303
SRTEAQVPNGQ	11	Unmodified	_SRTEAQVPNGQ_					0	0	0		ENST00000579674.1_1_17:27899162-27899804:+|nuORF;ENSG00000167543|ENST00000301057|TP53I13	ENST00000579674.1_1_17:27899162-27899804:+|nuORF	ENST00000579674.1_1_17:27899162-27899804:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	592.8408813476562	2	593.794183	1185.57381	-0.72552	-0.00043081	-2.8647	-0.0017011	-3.5903	-0.0021319	593.7924144758374	69.762	0.57088	69.762	69.475	70.046	0					30	13	3	0	0	0	0.026089	1	6668	6668		22.58	5.8623	1	1015600			55211	6801	45595	45634	60276	60276					-0.01155050998409024
SRTELKNKT	9	Unmodified	_SRTELKNKT_					0	0	0			REV__ZC3H12C|p.P550Lfs*13|1|0.05|ENSG00000149289|chr11:110164733-110164733|C/-|frameshift_variant	REV__ZC3H12C|p.P550Lfs*13|1|0.05|ENSG00000149289|chr11:110164733-110164733|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.8004150390625	2	538.806562	1075.59857	2.4584	0.0013246	-0.99892	-0.00053822	1.4594	0.00078635	539.3049629373895	94.858	0.6009	94.858	94.56	95.161	0					27	13	3	0	0	0	0.027462	1	10344	10344		34.173	2.6427	1	444250	+		55212	20153	45596	45635	60277	60277					0.0637962887494723
SRTGPDRSCP	10	Unmodified	_SRTGPDRSCP_					0	0	0			REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	REV__nc|ENSG00000100731|Q96RV3-4|PCNX1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.2706298828125	2	538.251097	1074.48764	2.7262	0.0014674	-3.8195	-0.0020558	-1.0933	-0.00058846	538.2489006989948	89.353	0.64445	89.353	89.119	89.763	0					33	15	3	0	0	0	0.02676	1	9568	9568		41.427	0	1	1211500	+		55213	17448	45597	45636	60278	60278					-0.04662334104796173
SRTGYHTTD	9	Unmodified	_SRTGYHTTD_					0	0	0		nc|ENSG00000056586|Q9HBD1-6|RC3H2;nc|ENSG00000056586|Q9HBD1-4|RC3H2;ENSG00000056586|ENST00000357244|RC3H2	nc|ENSG00000056586|Q9HBD1-6|RC3H2	nc|ENSG00000056586|Q9HBD1-6|RC3H2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.6851196289062	2	519.23597	1036.45739	-0.47044	-0.00024427	1.1015	0.00057192	0.63102	0.00032765	519.236100822732	58.776	1.0521	55.384	54.852	55.904	-3.392					34	20	3	0	0	0	0.027411	1	3827	3827		45.972	0	1	28843			55214	1229	45598	45637	60279	60279					-0.059383694983580426
SRTKLREV	8	Unmodified	_SRTKLREV_					0	0	0		ENSG00000114933|ENST00000403263|INO80D	ENSG00000114933|ENST00000403263|INO80D	ENSG00000114933|ENST00000403263|INO80D	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.7754821777344	2	494.79854	987.582528	-0.64022	-0.00031678	-0.040673	-2.0125E-05	-0.68089	-0.0003369	494.7984220136329	40.303	1.4434	40.303	40.106	41.55	0					40	31	2	0	0	0	0.028476	1	2506	2506		14.865	0	1	895970			55215	3050	45599	45638	60280	60280					0.08823967428702417
SRTLPDTIL	9	Unmodified	_SRTLPDTIL_					0	0	0		sp|Q6SW05|UL150_HCMVMUncharacterizedproteinUL150OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL150PE=3SV=1	sp|Q6SW05|UL150_HCMVMUncharacterizedproteinUL150OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL150PE=3SV=1	sp|Q6SW05|UL150_HCMVMUncharacterizedproteinUL150OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL150PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	508.2901611328125	2	508.292756	1014.57096	-0.9868	-0.00050158	0.71941	0.00036567	-0.26739	-0.00013591	508.29294653313184	116.44	1.3851	115.39	115.05	116.43	-1.0414					64	27	4	0	0	0	0.35444	1	8688	8688		56.721	0	1	264190			55216	32909	45600	45639	60281	60281					0.06425725614712974
SRTLVSGLLL	10	Unmodified	_SRTLVSGLLL_					0	0	0		ENST00000395675.4_1_17:18575624-18576137:-|nuORF;ENSG00000240445|ENST00000395675|FOXO3B	ENST00000395675.4_1_17:18575624-18576137:-|nuORF	ENST00000395675.4_1_17:18575624-18576137:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	530.3329467773438	2	529.832049	1057.64954	0.017891	9.4794E-06	-1.2154	-0.00064396	-1.1975	-0.00063448	529.8337061971487	131.67	1.3911	130.54	130.24	131.63	-1.1249					78	27	4	0	0	0	0.70152	1	10509	10509		30.318	3.6248	1	122000			55217	9340	45601	45640	60282	60282					0.12302577919831492
SRTMSSPLASL	11	Unmodified	_SRTMSSPLASL_					0	0	0		ENST00000374215.5_1_1:26627539-26629395:-|nuORF;ENST00000475591.5_1_1:26611834-26629395:-|nuORF;ENST00000472155.5_1_1:26611834-26629395:-|nuORF	ENST00000374215.5_1_1:26627539-26629395:-|nuORF	ENST00000374215.5_1_1:26627539-26629395:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.2992553710938	2	575.300255	1148.58596	-1.4964	-0.00086089	-3.3152	-0.0019072	-4.8116	-0.0027681	575.2982824131199	71.894	0.82426	68.437	68.174	68.998	-3.4563					54	16	5	0	0	0	0.70142	1	5500	5500		29.17	1.2878	1	943580			55218	11027	45602	45641	60283	60283					0.017608494203841474
SRTPSKEGN	9	Unmodified	_SRTPSKEGN_					0	0	0		ENSG00000226763|ENST00000417606|SRRM5	ENSG00000226763|ENST00000417606|SRRM5	ENSG00000226763|ENST00000417606|SRRM5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.7621765136719	2	488.246338	974.478122	-0.001639	-8.0023E-07	0.37325	0.00018224	0.37161	0.00018144	488.24962413021876	58.798	1.2002	55.406	54.802	56.002	-3.392					44	23	4	0	0	0	0.027425	1	3956	3956		60.118	0	1	42023			55219	9273	45603	45642	60284	60284					-0.010137791186593859
SRTTGRQRSS	10	Unmodified	_SRTTGRQRSS_					0	0	0		FLG2|p.Q1698Dfs*22|1|0.02|ENSG00000143520|chr1:152352694-152352695|-/TCCATGAGTAGTTCCGTGTC|frameshift_variant;FLG2|p.I2147Tfs*10|1|0.05|ENSG00000143520|chr1:152351346-152351347|-/G|frameshift_variant;ENSG00000143520|ENST00000388718|FLG2;CON__Q5D862	FLG2|p.Q1698Dfs*22|1|0.02|ENSG00000143520|chr1:152352694-152352695|-/TCCATGAGTAGTTCCGTGTC|frameshift_variant	FLG2|p.Q1698Dfs*22|1|0.02|ENSG00000143520|chr1:152352694-152352695|-/TCCATGAGTAGTTCCGTGTC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.2542724609375	2	568.299967	1134.58538	1.6293	0.00092591	2.2356	0.0012705	3.8648	0.0021964	568.3013600672615	93.611	0.62662	93.611	93.468	94.094	0					19	14	2	0	0	0	0.026931	1	10226	10226		30.318	0	1	1329500		+	55220	652	45604	45643	60285	60285					0.023471908155897836
SRTTGRQRSS	10	Unmodified	_SRTTGRQRSS_					0	0	0		FLG2|p.Q1698Dfs*22|1|0.02|ENSG00000143520|chr1:152352694-152352695|-/TCCATGAGTAGTTCCGTGTC|frameshift_variant;FLG2|p.I2147Tfs*10|1|0.05|ENSG00000143520|chr1:152351346-152351347|-/G|frameshift_variant;ENSG00000143520|ENST00000388718|FLG2;CON__Q5D862	FLG2|p.Q1698Dfs*22|1|0.02|ENSG00000143520|chr1:152352694-152352695|-/TCCATGAGTAGTTCCGTGTC|frameshift_variant	FLG2|p.Q1698Dfs*22|1|0.02|ENSG00000143520|chr1:152352694-152352695|-/TCCATGAGTAGTTCCGTGTC|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	568.299967	1134.58538	0.8366	0.00047544	1.5902	0.00090374	2.4268	0.0013792	568.8032356353216	96.415	0.3075	93.989	93.913	94.22	-2.4256	0.18897	-0.00051322	NaN	30.318	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21414		+	55221	652	45604	45643							0.023471908155897836
SRTTSSSVIV	10	Unmodified	_SRTTSSSVIV_					0	0	0		nc|ENSG00000137337|Q14676-4|MDC1;nc|ENSG00000137337|Q14676-3|MDC1;nc|ENSG00000137337|Q14676-2|MDC1;ENSG00000137337|ENST00000376406|MDC1	nc|ENSG00000137337|Q14676-4|MDC1	nc|ENSG00000137337|Q14676-4|MDC1	MSMS	OvCa9_classI_Rep2	2	518.78759765625	2	518.785296	1035.55604	NaN	NaN	NaN	NaN	NaN	NaN	NaN	80.083	1	78.388	77.888	78.888	-1.6951								0	0	0	0.12201	1	6751	6751		60.118	12.203	1				55222	4578	45605	45644	60286	60286					0.03968233746718397
SRTTTTWAP	9	Unmodified	_SRTTTTWAP_					0	0	0		PAPPA2|p.N1535Tfs*51|1|0.11|ENSG00000116183|chr1:176771068-176771069|-/CCCATCTCAACTCAGGCAAAGGAATGTCC|frameshift_variant	PAPPA2|p.N1535Tfs*51|1|0.11|ENSG00000116183|chr1:176771068-176771069|-/CCCATCTCAACTCAGGCAAAGGAATGTCC|frameshift_variant	PAPPA2|p.N1535Tfs*51|1|0.11|ENSG00000116183|chr1:176771068-176771069|-/CCCATCTCAACTCAGGCAAAGGAATGTCC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.2894592285156	2	510.759081	1019.50361	-0.87889	-0.0004489	3.3042	0.0016877	2.4253	0.0012388	511.2618892199915	80.26	0.34396	77.549	77.466	77.81	-2.7106					10	6	2	0	0	0	0.027433	1	6575	6575		42.396	1.8235	1	26282			55223	15474	45606	45645	60287	60287					-0.005363045962440083
SRTVNRNSTD	10	Unmodified	_SRTVNRNSTD_					0	0	0		F3|p.K233N|1|0.04|ENSG00000117525|chr1:94532373-94532373|C/A|missense_variant	F3|p.K233N|1|0.04|ENSG00000117525|chr1:94532373-94532373|C/A|missense_variant	F3|p.K233N|1|0.04|ENSG00000117525|chr1:94532373-94532373|C/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.3185424804688	2	575.283983	1148.55341	-0.30705	-0.00017664	2.4272	0.0013963	2.1201	0.0012197	575.285319329089	61.037	0.68565	61.037	60.688	61.374	0					35	15	3	0	0	0	0.026659	1	5330	5330		30.318	0	1	1470800			55224	14318	45607	45646	60288	60288					-0.014922216582590409
SRTYFLYI	8	Unmodified	_SRTYFLYI_					0	0	0		ENST00000247225.6_1_14:64151746-64151827:-|nuORF	ENST00000247225.6_1_14:64151746-64151827:-|nuORF	ENST00000247225.6_1_14:64151746-64151827:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.7835083007812	2	531.784567	1061.55458	-2.1067	-0.0011203	-2.0981	-0.0011158	-4.2048	-0.0022361	531.7833355543751	73.135	0.77467	69.739	69.397	70.172	-3.3961					35	15	3	0	0	0	0.65062	1	5663	5663		53.351	7.3995	1	680860			55225	9781	45608	45647	60289	60289					0.026266444486054752
SRTYYSLD	8	Unmodified	_SRTYYSLD_					0	0	0		nc|ENSG00000158458|O14511-7|NRG2;nc|ENSG00000158458|O14511-8|NRG2;nc|ENSG00000158458|O14511-2|NRG2;ENSG00000158458|ENST00000361474|NRG2;nc|ENSG00000158458|O14511-4|NRG2;nc|ENSG00000158458|O14511-3|NRG2	nc|ENSG00000158458|O14511-7|NRG2	nc|ENSG00000158458|O14511-7|NRG2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.7821350097656	2	502.737814	1003.46108	-0.92843	-0.00046676	-1.1779	-0.00059215	-2.1063	-0.0010589	502.73751112693583	69.245	0.14848	65.764	65.663	65.811	-3.4812					4	2	2	0	0	0	0.028476	1	5167	5167		17.365	0	1	6234.7			55226	5952	45609	45648	60290	60290					-0.04051699724482205
SRVADLLAL	9	Unmodified	_SRVADLLAL_					0	0	0			REV__ENST00000368677.2_1_1:153661447-153665772:+|nuORF	REV__ENST00000368677.2_1_1:153661447-153665772:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	479.2888488769531	2	479.290017	956.565481	-1.152	-0.00055214	1.4231	0.00068206	0.27106	0.00012992	479.2905830575166	116.71	1.0385	116.58	116.27	117.31	-0.12869					45	20	3	0	0	0	0.16562	2	11154	11154;11158		82.241	5.3863	1	230600	+		55227	21462	45610	45649	60291;60292	60291					0.0854604682289164
SRVAEHLRVL	10	Unmodified	_SRVAEHLRVL_					0	0	0			REV__N4BP3|p.R423H|1|0.21|ENSG00000145911|chr5:178121634-178121634|G/A|missense_variant	REV__N4BP3|p.R423H|1|0.21|ENSG00000145911|chr5:178121634-178121634|G/A|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	590.3552856445312	2	590.351471	1178.68839	-1.2722	-0.00075107	3.0788	0.0018176	1.8066	0.0010665	590.3530908336397	104.43	1.1976	104.43	103.98	105.18	0					67	27	4	0	0	0	0.49558	1	11719	11719		54.776	3.4409	1	3078400	+		55228	28694	45611	45650	60293	60293					0.10619303274188496
SRVALQAEKI	10	Unmodified	_SRVALQAEKI_					0	0	0		PCBD2|p.M87I|1|0.09|ENSG00000132570|chr5:134959084-134959084|G/T|missense_variant	PCBD2|p.M87I|1|0.09|ENSG00000132570|chr5:134959084-134959084|G/T|missense_variant	PCBD2|p.M87I|1|0.09|ENSG00000132570|chr5:134959084-134959084|G/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.8323974609375	2	557.83258	1113.65061	-5.3848	-0.0030038	3.062	0.0017081	-2.3228	-0.0012957	557.8340443185826	159.37	0.89273	157.79	157.47	158.36	-1.5858					38	20	3	0	0	0	0.66944	1	15749	15749		33.922	4.0801	1	65515			55229	15476	45612	45651	60294	60294					0.09832792288693781
SRVALQAEKI	10	Unmodified	_SRVALQAEKI_					0	0	0		PCBD2|p.M87I|1|0.09|ENSG00000132570|chr5:134959084-134959084|G/T|missense_variant	PCBD2|p.M87I|1|0.09|ENSG00000132570|chr5:134959084-134959084|G/T|missense_variant	PCBD2|p.M87I|1|0.09|ENSG00000132570|chr5:134959084-134959084|G/T|missense_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	557.83258	1113.65061	-6.9825	-0.0038951	5.4904	0.0030627	-1.4921	-0.00083236	557.8351712023294	158.89	0.62518	157.63	157.4	158.02	-1.267	-0.080185	0.0019024	NaN	33.922	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21955			55230	15476	45612	45651							0.09832792288693781
SRVCDLPLD	9	Carbamidomethyl (C)	_SRVC(Carbamidomethyl (C))DLPLD_	SRVC(1)DLPLD		SRVC(58)DLPLD		0	1	0		ENST00000573266.5_1_19:52204948-52207434:+|nuORF;ENST00000576093.5_1_19:52197750-52207734:+|nuORF;ENSG00000182310|ENST00000637797|SPACA6	ENST00000573266.5_1_19:52204948-52207434:+|nuORF	ENST00000573266.5_1_19:52204948-52207434:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.7991333007812	2	537.766049	1073.51754	-0.7262	-0.00039053	-0.75753	-0.00040737	-1.4837	-0.0007979	537.7638060530732	78.592	0.65757	75.841	75.474	76.132	-2.7514					14	13	2	0	0	0	0.027304	1	6341	6341		58.23	7.0372	1	27173			55231	7991	45613	45652	60295	60295	78				-0.01627395159448497
SRVCRPQEPSL	11	Unmodified	_SRVCRPQEPSL_					0	0	0		ENST00000572977.5_2_17:80901779-80901887:-|nuORF	ENST00000572977.5_2_17:80901779-80901887:-|nuORF	ENST00000572977.5_2_17:80901779-80901887:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	636.3299560546875	2	636.329879	1270.6452	-1.733	-0.0011028	-1.0567	-0.00067244	-2.7898	-0.0017752	636.329149190994	88.48	1.0979	85.877	85.578	86.676	-2.6027					63	21	4	0	0	0	0.68709	1	7562	7562		34.087	0.16487	1	464800			55232	13914	45614	45653	60296	60296					0.02070745434593846
SRVDQITTL	9	Unmodified	_SRVDQITTL_					0	0	0			REV__ENSG00000162402|ENST00000294383|USP24	REV__ENSG00000162402|ENST00000294383|USP24	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.763916015625	2	516.787838	1031.56112	-0.74281	-0.00038388	-1.6562	-0.00085588	-2.399	-0.0012398	516.7876419123206	35.95	0.64408	35.95	35.753	36.397	0					24	13	3	0	0	0	0.027446	1	1846	1846		60.118	5.3419	1	70456	+		55233	20732	45615	45654	60297	60297					0.04660537609311177
SRVEAVYVL	9	Unmodified	_SRVEAVYVL_					0	0	0		ENSG00000117115|ENST00000375486|PADI2;nc|ENSG00000117115|Q9Y2J8-2|PADI2	ENSG00000117115|ENST00000375486|PADI2	ENSG00000117115|ENST00000375486|PADI2	MULTI-MSMS	OvCa9_classI_Rep2	2	518.294677734375	2	518.295299	1034.57605	0.55863	0.00028953	-1.1323	-0.00058686	-0.57366	-0.00029732	518.2947779627386	92.589	2.8086	91.421	91.024	93.832	-1.168					161	54	5	0	0	0	0.14855	7	8253	8223;8229;8235;8241;8247;8253;8259		85.161	20.954	1	5418500			55234	3235	45616	45655	60298;60299;60300;60301;60302;60303;60304	60303					0.060140294773418645
SRVEAVYVL	9	Unmodified	_SRVEAVYVL_					0	0	0		ENSG00000117115|ENST00000375486|PADI2;nc|ENSG00000117115|Q9Y2J8-2|PADI2	ENSG00000117115|ENST00000375486|PADI2	ENSG00000117115|ENST00000375486|PADI2	MULTI-MSMS	OvCa9_classI_Rep3	3	518.2954711914062	2	518.295299	1034.57605	-0.7849	-0.00040681	0.069296	3.5916E-05	-0.7156	-0.00037089	518.2953894902441	93.364	2.7661	91.402	91.079	93.845	-1.9617					164	54	5	0	0	0	0.2077	7	5956	5956;5962;5968;5974;5980;5986;5992		75.043	10.836	1	8061400			55235	3235	45616	45655	60305;60306;60307;60308;60309;60310;60311	60305					0.060140294773418645
SRVEAVYVL	9	Unmodified	_SRVEAVYVL_					0	0	0		ENSG00000117115|ENST00000375486|PADI2;nc|ENSG00000117115|Q9Y2J8-2|PADI2	ENSG00000117115|ENST00000375486|PADI2	ENSG00000117115|ENST00000375486|PADI2	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.2958984375	2	518.295299	1034.57605	-0.7282	-0.00037742	-0.16711	-8.6612E-05	-0.89531	-0.00046404	518.2952267332782	93.923	2.6605	91.416	91.171	93.831	-2.5072					159	53	5	0	0	0	0.2784	2	8234	8198;8234		65.465	8.7443	1	7836100			55236	3235	45616	45655	60312;60313	60313					0.060140294773418645
SRVHKYITE	9	Unmodified	_SRVHKYITE_					0	0	0		ENSG00000174799|ENST00000257287|CEP135	ENSG00000174799|ENST00000257287|CEP135	ENSG00000174799|ENST00000257287|CEP135	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.8106689453125	2	566.809105	1131.60366	-0.22392	-0.00012692	-0.003998	-2.2661E-06	-0.22792	-0.00012919	566.8090561851628	55.123	1.2241	51.875	51.491	52.715	-3.2474					83	23	5	0	0	0	0.2422	1	3470	3470		69.628	10.846	1	2010200			55237	7492	45617	45656	60314	60314					0.043119327375507055
SRVIVLVFFW	10	Unmodified	_SRVIVLVFFW_					0	0	0			REV__L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|308|3|anti-sense	REV__L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|308|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3687133789062	2	633.373884	1264.73321	-4.8823	-0.0030923	-2.3632	-0.0014968	-7.2455	-0.0045891	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.75313	1	13002	13002		24.519	2.5593	1	765700	+		55238	28512	45618	45657	60315	60315					0.11143734087499979
SRVKLRPL	8	Unmodified	_SRVKLRPL_					0	0	0		PTPRG|p.I977Mfs*4|1|0.42|ENSG00000144724|chr3:62269090-62269090|T/-|frameshift_variant;nc|ENSG00000144724|P23470-2|PTPRG;ENSG00000144724|ENST00000474889|PTPRG;ENST00000475012.5_1_3:62203523-62278979:+|nuORF	PTPRG|p.I977Mfs*4|1|0.42|ENSG00000144724|chr3:62269090-62269090|T/-|frameshift_variant	PTPRG|p.I977Mfs*4|1|0.42|ENSG00000144724|chr3:62269090-62269090|T/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.2779235839844	2	484.821818	967.629084	1.3521	0.00065551	0.88905	0.00043103	2.2411	0.0010865	484.8221822599755	79.036	0.36899	79.036	78.791	79.16	0					13	8	2	0	0	0	0.028476	1	8046	8046		8.2313	0	1	258850			55239	5177	45619	45658	60316	60316					0.14397452050650372
SRVKYQVIN	9	Unmodified	_SRVKYQVIN_					0	0	0		nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6;ENST00000426898.2_1_12:45610123-45776982:+|nuORF	nc|ENSG00000177119|Q4KMQ2-3|ANO6	nc|ENSG00000177119|Q4KMQ2-3|ANO6	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.27783203125	2	553.819473	1105.62439	-0.60169	-0.00033323	0.87509	0.00048464	0.2734	0.00015141	553.8195945308663	51.844	0.6389	51.844	51.708	52.347	0					29	14	3	0	0	0	0.027462	1	4032	4032		20.947	0	1	612480			55240	7661	45620	45659	60317	60317					0.07580523117258053
SRVLIARLC	9	Unmodified	_SRVLIARLC_					0	0	0		ENST00000588685.1_1_19:56989652-56989751:+|nuORF;ENST00000585445.1_1_19:56989652-57005541:+|nuORF	ENST00000588685.1_1_19:56989652-56989751:+|nuORF	ENST00000588685.1_1_19:56989652-56989751:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.7930908203125	2	515.813136	1029.61172	-0.3199	-0.00016501	3.4706	0.0017902	3.1507	0.0016251	515.8146105809437	77.093	0.31425	74.721	74.453	74.767	-2.3715					6	5	2	0	0	0	0.027462	1	4008	4008		26.693	7.3329	1	6451			55241	14032	45621	45660	60318	60318					0.09809788453344481
SRVLKTEL	8	Unmodified	_SRVLKTEL_					0	0	0		ENST00000494336.1_1_2:97911343-97914952:+|nuORF;nc|ENSG00000135976|A6QL64-3|ANKRD36;ENST00000421946.2_1_2:97879127-97913404:+|nuORF;nc|ENSG00000196912|Q8N2N9-3|ANKRD36B;nc|ENSG00000196912|Q8N2N9-2|ANKRD36B;ENSG00000196912|ENST00000359901|ANKRD36B;ENSG00000135976|ENST00000420699|ANKRD36	ENST00000494336.1_1_2:97911343-97914952:+|nuORF	ENST00000494336.1_1_2:97911343-97914952:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.2679138183594	2	473.290017	944.565481	0.59513	0.00028167	-1.1434	-0.00054114	-0.54823	-0.00025947	473.2895423396178	78.91	0.99306	76.158	75.945	76.938	-2.7514					40	20	3	0	0	0	0.028476	1	6435	6435		20.947	0	1	140720			55242	4443	45622	45661	60319	60319					0.09098046822896322
SRVLLLPLE	9	Unmodified	_SRVLLLPLE_					0	0	0		AFF1-UBR5|1|fusion;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	AFF1-UBR5|1|fusion	AFF1-UBR5|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.8770141601562	2	520.329142	1038.64373	2.2264	0.0011584	0.11955	6.2205E-05	2.3459	0.0012206	520.329090500066	97.934	0.42477	97.934	97.654	98.079	0					18	9	2	0	0	0	0.027462	1	10762	10762		25.574	6.2141	1	322660			55243	45	45623	45662	60320	60320					0.12595479408150823
SRVNIMPII	9	Unmodified	_SRVNIMPII_					0	0	0		tr|A0A7D6VW97|A0A7D6VW97_9CLOTGer(X)CfamilysporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03230PE=3SV=1	tr|A0A7D6VW97|A0A7D6VW97_9CLOTGer(X)CfamilysporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03230PE=3SV=1	tr|A0A7D6VW97|A0A7D6VW97_9CLOTGer(X)CfamilysporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03230PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.291259765625	2	521.807519	1041.60049	-1.2932	-0.00067482	2.4083	0.0012567	1.1151	0.00058187	521.811087122818	92.724	1.2566	90.217	89.755	91.012	-2.5072					56	24	4	0	0	0	0.027462	1	8037	8037		56.721	25.191	1	134170			55244	35244	45624	45663	60321	60321					0.08134966359216378
SRVNIMPII	9	Unmodified	_SRVNIMPII_					0	0	0		tr|A0A7D6VW97|A0A7D6VW97_9CLOTGer(X)CfamilysporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03230PE=3SV=1	tr|A0A7D6VW97|A0A7D6VW97_9CLOTGer(X)CfamilysporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03230PE=3SV=1	tr|A0A7D6VW97|A0A7D6VW97_9CLOTGer(X)CfamilysporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03230PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.807519	1041.60049	1.3543	0.00070671	-0.37402	-0.00019517	0.98032	0.00051154	521.8096275353744	91.471	1.3725	90.235	89.689	91.061	-1.2355	0.0077205	-0.0013174	NaN	56.721	65	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102690			55245	35244	45624	45663							0.08134966359216378
SRVNIMPII	9	Unmodified	_SRVNIMPII_					0	0	0		tr|A0A7D6VW97|A0A7D6VW97_9CLOTGer(X)CfamilysporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03230PE=3SV=1	tr|A0A7D6VW97|A0A7D6VW97_9CLOTGer(X)CfamilysporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03230PE=3SV=1	tr|A0A7D6VW97|A0A7D6VW97_9CLOTGer(X)CfamilysporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03230PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	521.807519	1041.60049	-1.2323	-0.00064301	0.85448	0.00044588	-0.37779	-0.00019713	521.8098696417994	92.255	0.74571	90.231	89.89	90.636	-2.0241	0.0030567	-3.5312E-05	NaN	56.721	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142280			55246	35244	45624	45663							0.08134966359216378
SRVNIPKVL	9	Unmodified	_SRVNIPKVL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000070371|ENST00000427926|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa9_classI_Rep2	2	513.3270263671875	2	513.326934	1024.63931	-0.72981	-0.00037463	-1.1237	-0.00057681	-1.8535	-0.00095145	513.3270041871727	67.528	2.3815	64.867	64.644	67.025	-2.661					66	47	2	0	0	0	0.33652	1	5289	5289		58.782	5.8453	1	1844100			55247	4906;1426	45625	45664	60322	60322					0.12798014985241934
SRVNIPKVL	9	Unmodified	_SRVNIPKVL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000070371|ENST00000427926|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MSMS	OvCa9_classI_Rep4_	4	513.3301391601562	2	513.326934	1024.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.501	1	65.011	64.511	65.511	-3.4902								0	0	0	0.043559	1	5084	5084		79.451	9.8234	1				55248	4906;1426	45625	45664	60323	60323					0.12798014985241934
SRVNIPKVL	9	Unmodified	_SRVNIPKVL_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion;ENSG00000070371|ENST00000427926|CLTCL1;nc|ENSG00000070371|P53675-2|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000070371|ENST00000427926|CLTCL1	nc|ENSG00000141367|Q00610-2|CLTC	MSMS	OvCa9_classI_Rep4_	4	513.3291625976562	2	513.326934	1024.63931	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.693	1	65.203	64.703	65.703	-3.4902								0	0	0	0.17066	1	5107	5107		49.442	0	1				55249	4906;1426	45625	45664	60324	60324					0.12798014985241934
SRVPIRASRG	10	Unmodified	_SRVPIRASRG_					0	0	0			REV__ENST00000455271.5_1_15:63449103-63449277:-|nuORF	REV__ENST00000455271.5_1_15:63449103-63449277:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.9677124023438	2	549.828163	1097.64177	-0.10617	-5.8378E-05	1.4457	0.00079487	1.3395	0.00073649	549.8295773122409	31.882	0.34759	31.882	31.608	31.956	0					8	6	2	0	0	0	0.027001	1	1331	1331		35.152	16.89	1	35882	+		55250	26013	45626	45665	60325	60325					0.09685863442882692
SRVPREPGV	9	Unmodified	_SRVPREPGV_					0	0	0		nc|ENSG00000070047|Q9P1Y6-2|PHRF1;nc|ENSG00000070047|Q9P1Y6-3|PHRF1;ENSG00000070047|ENST00000264555|PHRF1;PHRF1-PTDSS2|1|fusion	nc|ENSG00000070047|Q9P1Y6-2|PHRF1	nc|ENSG00000070047|Q9P1Y6-2|PHRF1	MSMS	OvCa99_classI_Rep5	1	498.7856750488281	2	498.78289	995.551228	NaN	NaN	NaN	NaN	NaN	NaN	NaN	161.62	1	161.62	161.12	162.12	0								0	0	0	0.18234	1	18950	18950		31.53	2.3803	1				55251	1418	45627	45666	60326	60326					0.05327394394623752
SRVRAVFFDLD	11	Unmodified	_SRVRAVFFDLD_					0	0	0		ENSG00000170191|ENST00000304788|NANP	ENSG00000170191|ENST00000304788|NANP	ENSG00000170191|ENST00000304788|NANP	MULTI-SECPEP	OvCa99_classI_Rep5	1	441.7878112792969	3	442.238455	1323.69353	2.1218	0.00093834	0.94381	0.00041739	3.0656	0.0013557	442.23864567345265	101.52	0.83875	101.52	100.94	101.78	0					23	19	2	0	0	0	0.025864	1	11320	11320		12.433	0	1	222430			55252	7082	45628	45667	60327	60327					0.044635623461317664
SRVRYEPLLRL	11	Unmodified	_SRVRYEPLLRL_					0	0	0			REV__ENST00000548845.5_1_12:53693515-53693821:+|nuORF	REV__ENST00000548845.5_1_12:53693515-53693821:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	468.3066711425781	3	467.949016	1400.82522	0.23265	0.00010887	2.6904	0.001259	2.923	0.0013678	467.94991030338184	62.309	0.3374	62.309	62.122	62.46	0					15	7	3	0	0	0	0.026302	1	5530	5530		8.4073	2.7085	1	345200	+		55253	27447	45629	45668	60328	60328					0.14083792433893905
SRVSFLEKV	9	Unmodified	_SRVSFLEKV_					0	0	0			REV__ENST00000488610.5_1_9:138392556-138393921:+|nuORF	REV__ENST00000488610.5_1_9:138392556-138393921:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	532.8082885742188	2	532.808574	1063.60259	-0.3837	-0.00020444	-0.36608	-0.00019505	-0.74977	-0.00039948	532.8083640293886	77.17	3.7419	74.798	74.138	77.88	-2.3715					207	73	5	0	0	0	0.24951	1	4068	4068		68.787	0	1	3803100	+		55254	18579	45630	45669	60329	60329					0.07333718368658992
SRVSLVLLV	9	Unmodified	_SRVSLVLLV_					0	0	0		ENST00000225964.9_1_17:48268227-48270392:-|nuORF	ENST00000225964.9_1_17:48268227-48270392:-|nuORF	ENST00000225964.9_1_17:48268227-48270392:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.802490234375	2	493.32386	984.633166	0.31212	0.00015398	-0.70334	-0.00034697	-0.39122	-0.000193	493.3232771347062	57.127	1.0692	53.782	53.476	54.546	-3.3449					32	20	3	0	0	0	0.027462	1	3755	3755		24.519	0	1	49338			55255	9705	45631	45670	60330	60330					0.14023496753702602
SRVSPVRSH	9	Unmodified	_SRVSPVRSH_					0	0	0			REV__ENST00000225296.7_1_17:5345880-5345958:-|nuORF	REV__ENST00000225296.7_1_17:5345880-5345958:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.7696533203125	2	512.785964	1023.55738	1.952	0.001001	2.5791	0.0013225	4.5311	0.0023235	512.7869858835439	77.521	0.54876	77.521	77.252	77.801	0					17	12	2	0	0	0	0.027462	1	7818	7818		14.865	3.9993	1	334030	+		55256	23756	45632	45671	60331	60331					0.04653912626145029
SRVSSPLLPI	10	Unmodified	_SRVSSPLLPI_					0	0	0			REV__ENSG00000154217|ENST00000581322|PITPNC1	REV__ENSG00000154217|ENST00000581322|PITPNC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.8257446289062	2	534.824224	1067.63389	-0.46833	-0.00025048	-0.028016	-1.4983E-05	-0.49635	-0.00026546	534.8241284947087	89.464	2.2193	86.889	86.559	88.779	-2.575					109	43	4	0	0	0	0.34811	1	7674	7674		75.043	6.5586	1	706790	+		55257	20367	45633	45672	60332	60332					0.10278291402755713
SRVSTPTPP	9	Unmodified	_SRVSTPTPP_					0	0	0		ENST00000372706.5_1_1:40943455-40944827:+|nuORF	ENST00000372706.5_1_1:40943455-40944827:+|nuORF	ENST00000372706.5_1_1:40943455-40944827:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.7733459472656	2	471.256174	940.497795	0.3825	0.00018025	0.17831	8.4031E-05	0.56081	0.00026428	471.2560820573646	65.337	0.53102	61.851	61.599	62.13	-3.4854					14	10	2	0	0	0	0.027392	1	4684	4684		35.618	0	1	31634			55258	10985	45634	45673	60333	60333					0.025165968920987325
SRVVHLVF	8	Unmodified	_SRVVHLVF_					0	0	0			REV__ENST00000397821.7_1_X:19554016-19554142:-|nuORF	REV__ENST00000397821.7_1_X:19554016-19554142:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	478.7852478027344	2	478.787444	955.560336	-2.4635	-0.0011795	-1.8767	-0.00089854	-4.3402	-0.0020781	478.7864521794397	145.79	1.5385	145.57	144.98	146.52	-0.22696					81	30	4	0	0	0	0.745	1	14754	14754		29.15	0	1	230950	+		55259	25362	45635	45674	60334	60334					0.08077787750960397
SRVVRPDLR	9	Unmodified	_SRVVRPDLR_					0	0	0			REV__ENST00000382948.9_1_18:47802317-47803521:-|nuORF	REV__ENST00000382948.9_1_18:47802317-47803521:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.8036499023438	2	549.330539	1096.64652	-0.18991	-0.00010432	2.4259	0.0013326	2.236	0.0012283	549.3314991175513	65.164	0.43068	65.164	64.916	65.347	0					22	10	3	0	0	0	0.027462	1	5939	5939		30.318	0	1	398850	+		55260	25216	45636	45675	60335	60335					0.10206747585630183
SRVYLLMKKL	10	Unmodified	_SRVYLLMKKL_					0	0	0		nc|ENSG00000163882|P52434-5|POLR2H;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-2|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;ENST00000429568.1_1_3:184085914-184086079:+|nuORF;ENST00000476003.1_1_3:184084469-184086079:+|nuORF	nc|ENSG00000163882|P52434-5|POLR2H	nc|ENSG00000163882|P52434-5|POLR2H	MULTI-SECPEP	OvCa9_classI_Rep2	2	417.90655517578125	3	417.593293	1249.75805	-0.75107	-0.00031364	4.0006	0.0016706	3.2495	0.001357	417.59491830343205	51.506	0.89243	48.693	48.403	49.295	-2.8129					30	17	2	0	0	0	0.027253	1	3367	3367		26.063	9.346	1	46532			55261	6373	45637	45676	60336	60336					0.14316045898590346
SRVYLLMKKL	10	Unmodified	_SRVYLLMKKL_					0	0	0		nc|ENSG00000163882|P52434-5|POLR2H;nc|ENSG00000163882|P52434-3|POLR2H;nc|ENSG00000163882|P52434-2|POLR2H;ENSG00000163882|ENST00000456318|POLR2H;ENST00000429568.1_1_3:184085914-184086079:+|nuORF;ENST00000476003.1_1_3:184084469-184086079:+|nuORF	nc|ENSG00000163882|P52434-5|POLR2H	nc|ENSG00000163882|P52434-5|POLR2H	MULTI-SECPEP	OvCa9_classI_Rep4_	4	417.90679931640625	3	417.593293	1249.75805	-0.4233	-0.00017677	3.2816	0.0013704	2.8583	0.0011936	417.5946707119775	52.006	0.81041	48.832	48.573	49.384	-3.1734					25	15	2	0	0	0	0.027187	1	3071	3071		19.263	6.451	1	32243			55262	6373	45637	45676	60337	60337					0.14316045898590346
SRWAVLLSH	9	Unmodified	_SRWAVLLSH_					0	0	0			REV__ENSG00000114270|ENST00000681320|COL7A1	REV__ENSG00000114270|ENST00000681320|COL7A1	MULTI-SECPEP	OvCa9_classI_Rep3	3	534.8251953125	2	534.801083	1067.58761	0.37458	0.00020033	3.1014	0.0016586	3.4759	0.0018589	535.3049292741674	89.222	0.19719	87.091	86.944	87.141	-2.1309					5	3	2	0	0	0	0.027462	1	5467	5467		39.253	7.298	1	8532.7	+		55263	18183	45638	45677	60338	60338					0.05652271291342004
SRWCWRAGCA	10	Unmodified	_SRWCWRAGCA_					0	0	0		ENST00000379284.1_1_6:13365294-13365495:-|nuORF	ENST00000379284.1_1_6:13365294-13365495:-|nuORF	ENST00000379284.1_1_6:13365294-13365495:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.3034057617188	2	598.266027	1194.5175	1.452	0.00086871	-2.9019	-0.0017361	-1.4498	-0.00086738	598.2641150191397	138.76	0.47705	138.76	138.45	138.93	0					12	9	2	0	0	0	0.026956	1	16167	16167		26.693	5.746	1	56435			55264	11122	45639	45678	60339	60339					-0.07197673640439461
SRWHFLQI	8	Unmodified	_SRWHFLQI_					0	0	0		ENST00000378270.5_1_13:50235106-50265589:-|nuORF	ENST00000378270.5_1_13:50235106-50265589:-|nuORF	ENST00000378270.5_1_13:50235106-50265589:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	543.79541015625	2	543.795801	1085.57705	2.1564	0.0011726	-1.9345	-0.001052	0.2219	0.00012067	543.7948283137953	107.4	2.2602	107.4	106.89	109.15	0					187	52	5	0	0	0	0.48084	1	12266	12266		79.451	6.5718	1	132780000			55265	11105	45640	45679	60340	60340					0.03768288636888428
SRWKLAIVSL	10	Unmodified	_SRWKLAIVSL_					0	0	0		ATP13A3|p.I686Mfs*20|1|0.05|ENSG00000133657|chr3:194437157-194437158|-/CACATTGAAATACAATTCTATCC|frameshift_variant;nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3	ATP13A3|p.I686Mfs*20|1|0.05|ENSG00000133657|chr3:194437157-194437158|-/CACATTGAAATACAATTCTATCC|frameshift_variant	ATP13A3|p.I686Mfs*20|1|0.05|ENSG00000133657|chr3:194437157-194437158|-/CACATTGAAATACAATTCTATCC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.2952270507812	2	586.861141	1171.70773	2.6263	0.0015413	-1.0038	-0.00058911	1.6224	0.00095215	586.860463097765	99.215	0.65163	99.215	98.877	99.529	0					18	15	2	0	0	0	0.026994	1	10967	10967		13.454	0	1	455990			55266	128	45641	45680	60341	60341					0.12874259565069224
SRWKLAIVSL	10	Unmodified	_SRWKLAIVSL_					0	0	0		ATP13A3|p.I686Mfs*20|1|0.05|ENSG00000133657|chr3:194437157-194437158|-/CACATTGAAATACAATTCTATCC|frameshift_variant;nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3	ATP13A3|p.I686Mfs*20|1|0.05|ENSG00000133657|chr3:194437157-194437158|-/CACATTGAAATACAATTCTATCC|frameshift_variant	ATP13A3|p.I686Mfs*20|1|0.05|ENSG00000133657|chr3:194437157-194437158|-/CACATTGAAATACAATTCTATCC|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	586.861141	1171.70773	-2.275	-0.0013351	0.96531	0.0005665	-1.3097	-0.00076862	586.8615297065786	100.61	0.80614	99.001	98.85	99.656	-1.6053	-0.09685	0.0012071	NaN	18.262	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35583			55267	128	45641	45680							0.12874259565069224
SRWKLAIVSL	10	Unmodified	_SRWKLAIVSL_					0	0	0		ATP13A3|p.I686Mfs*20|1|0.05|ENSG00000133657|chr3:194437157-194437158|-/CACATTGAAATACAATTCTATCC|frameshift_variant;nc|ENSG00000133657|Q9H7F0|ATP13A3;ENSG00000133657|ENST00000645319|ATP13A3	ATP13A3|p.I686Mfs*20|1|0.05|ENSG00000133657|chr3:194437157-194437158|-/CACATTGAAATACAATTCTATCC|frameshift_variant	ATP13A3|p.I686Mfs*20|1|0.05|ENSG00000133657|chr3:194437157-194437158|-/CACATTGAAATACAATTCTATCC|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	586.861141	1171.70773	-0.99758	-0.00058544	-0.35983	-0.00021117	-1.3574	-0.00079661	586.860846209971	101.34	0.72529	99.078	98.883	99.609	-2.2665	-0.019842	-0.00034828	NaN	18.262	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37957			55268	128	45641	45680							0.12874259565069224
SRWKRIYRA	9	Unmodified	_SRWKRIYRA_					0	0	0		PEX12|p.F155I|1|0.1|ENSG00000108733|chr17:35577255-35577255|A/T|missense_variant	PEX12|p.F155I|1|0.1|ENSG00000108733|chr17:35577255-35577255|A/T|missense_variant	PEX12|p.F155I|1|0.1|ENSG00000108733|chr17:35577255-35577255|A/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.9128723144531	3	412.575513	1234.70471	-0.37948	-0.00015656	0.69941	0.00028856	0.31993	0.000132	412.91036718535196	64.041	0.76781	64.041	63.607	64.375	0					32	18	3	0	0	0	0.027462	1	5762	5762		17.468	0	1	281660			55269	15491	45642	45681	60342	60342					0.096744292309495
SRWMKPKCEKY	11	Unmodified	_SRWMKPKCEKY_					0	0	0			REV__ENSG00000189108|ENST00000372582|IL1RAPL2	REV__ENSG00000189108|ENST00000372582|IL1RAPL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.3150329589844	3	485.912697	1454.71626	0.282	0.00013703	-3.1117	-0.001512	-2.8297	-0.001375	486.2454698281384	64.466	1.0688	60.991	60.588	61.657	-3.475					49	21	3	0	0	0	0.026242	1	4666	4666		28.384	13.69	1	130270	+		55270	22762	45643	45682	60343	60343					0.007091221477367071
SRWMKPKCEKY	11	Unmodified	_SRWMKPKCEKY_					0	0	0			REV__ENSG00000189108|ENST00000372582|IL1RAPL2	REV__ENSG00000189108|ENST00000372582|IL1RAPL2	MULTI-MATCH	OvCa9_classI_Rep2	2		3	485.912697	1454.71626	-1.0939	-0.00053155	-2.2065	-0.0010722	-3.3005	-0.0016037	485.91160641565614	63.694	1.205	60.95	60.374	61.579	-2.7444	-0.020444	0.00076934	NaN	28.384	43	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31599	+		55271	22762	45643	45682							0.007091221477367071
SRWQWRRRRRR	11	Unmodified	_SRWQWRRRRRR_					0	0	0			REV__ENST00000487093.5_1_3:51575631-51661706:+|nuORF	REV__ENST00000487093.5_1_3:51575631-51661706:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.8385620117188	3	566.996468	1697.96757	-0.46615	-0.00026431	-0.19157	-0.00010862	-0.65772	-0.00037292	566.9966724790696	37.668	0.32135	37.668	37.485	37.806	0					9	6	2	0	0	0	0.026554	1	2066	2066		1.2319	0.86052	1	55826	+		55272	26597	45644	45683	60344	60344					0.14650862739267723
SRWQWRRRRRR	11	Unmodified	_SRWQWRRRRRR_					0	0	0			REV__ENST00000487093.5_1_3:51575631-51661706:+|nuORF	REV__ENST00000487093.5_1_3:51575631-51661706:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	566.996468	1697.96757	-0.066705	-3.7821E-05	-2.9295	-0.001661	-2.9962	-0.0016989	567.3291549803952	40.743	0.73009	37.789	37.58	38.31	-2.9541	0.06016	-0.0015103	NaN	1.2319	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11254	+		55273	26597	45644	45683							0.14650862739267723
SRWSSLLS	8	Unmodified	_SRWSSLLS_					0	0	0		ENST00000326407.10_1_2:231743538-231743664:+|nuORF	ENST00000326407.10_1_2:231743538-231743664:+|nuORF	ENST00000326407.10_1_2:231743538-231743664:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	468.3066711425781	2	468.250892	934.48723	0.2431	0.00011383	-1.4826	-0.00069421	-1.2395	-0.00058038	468.25092264261855	62.291	0.3374	62.291	62.122	62.46	0					10	7	2	0	0	0	0.028476	1	5530	5530		7.6903	0	1	203360			55274	10409	45645	45684	60345	60345					0.017366142376772586
SRWVEARA	8	Unmodified	_SRWVEARA_					0	0	0			REV__ENST00000229329.6_1_12:22199202-22199379:+|nuORF	REV__ENST00000229329.6_1_12:22199202-22199379:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.7786560058594	2	487.761958	973.509363	1.8109	0.00088329	4.4653	0.002178	6.2762	0.0030613	487.7641008164241	90.662	0.2957	89.36	89.176	89.471	-1.302					8	5	2	0	0	0	0.028476	1	8013	8013		16.473	5.6076	1	9100	+		55275	23783	45646	45685	60346	60346					0.02154838706087503
SRWWLRRYQQV	11	Unmodified	_SRWWLRRYQQV_					0	0	0		nc|nan|A6NJI1|C11orf86	nc|nan|A6NJI1|C11orf86	nc|nan|A6NJI1|C11orf86	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.7673950195312	3	526.619781	1576.83751	1.867	0.00098318	3.743	0.0019712	5.61	0.0029543	526.957387278502	85.574	1.0975	85.574	85.292	86.389	0					39	26	3	0	0	0	0.026383	1	8952	8952		5.4129	0	1	219200			55276	15416	45647	45686	60347	60347					0.07216828896935112
SRYEAAVPD	9	Unmodified	_SRYEAAVPD_					0	0	0		ENSG00000174684|ENST00000311181|B4GAT1	ENSG00000174684|ENST00000311181|B4GAT1	ENSG00000174684|ENST00000311181|B4GAT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.26263427734375	2	504.243264	1006.47197	0.46254	0.00023323	0.63483	0.00032011	1.0974	0.00055334	504.24403980699213	72.512	0.52036	72.512	72.125	72.645	0					21	12	3	0	0	0	0.027432	1	7042	7042		49.536	19.032	1	627660			55277	7481	45648	45687	60348	60348					-0.031002973501927045
SRYFFKLL	8	Unmodified	_SRYFFKLL_					0	0	0		tr|A0A7D7A6D3|A0A7D7A6D3_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09920PE=4SV=1	tr|A0A7D7A6D3|A0A7D7A6D3_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09920PE=4SV=1	tr|A0A7D7A6D3|A0A7D7A6D3_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09920PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.8074340820312	2	537.310752	1072.60695	-1.0536	-0.00056613	0.19401	0.00010424	-0.85962	-0.00046188	537.3106778275309	74.603	1.2538	71.372	71	72.253	-3.2308					53	25	3	0	0	0	0.028476	1	5919	5919		47.657	0	1	302350			55278	36191	45649	45688	60349	60349					0.07355227582252155
SRYKNNKFI	9	Unmodified	_SRYKNNKFI_					0	0	0		tr|A0A7D6ZJM6|A0A7D6ZJM6_9CLOTAspartatecarbamoyltransferaseOS=ClostridiumintestinaleOX=36845GN=pyrBPE=3SV=1	tr|A0A7D6ZJM6|A0A7D6ZJM6_9CLOTAspartatecarbamoyltransferaseOS=ClostridiumintestinaleOX=36845GN=pyrBPE=3SV=1	tr|A0A7D6ZJM6|A0A7D6ZJM6_9CLOTAspartatecarbamoyltransferaseOS=ClostridiumintestinaleOX=36845GN=pyrBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.33203125	2	585.324922	1168.63529	1.8395	0.0010767	0.24969	0.00014615	2.0892	0.0012229	585.3247131399579	96.715	0.76577	96.715	96.501	97.267	0					52	17	4	0	0	0	0.027462	1	10634	10634		34.173	8.5985	1	4185900			55279	35647	45650	45689	60350	60350					0.05771925491512775
SRYTEIRLV	9	Unmodified	_SRYTEIRLV_					0	0	0		ENSG00000177575|ENST00000432237|CD163;nc|ENSG00000177575|Q86VB7|CD163;nc|ENSG00000177575|Q86VB7-2|CD163;ENST00000537044.1_1_12:7633616-7656286:-|nuORF	ENSG00000177575|ENST00000432237|CD163	ENSG00000177575|ENST00000432237|CD163	MULTI-MSMS	OvCa99_classI_Rep5	1	568.8258666992188	2	568.824755	1135.63496	0.4912	0.00027941	0.43605	0.00024804	0.92725	0.00052744	568.824848367853	74.013	0.49573	74.013	73.829	74.324	0					24	12	3	0	0	0	0.37182	1	7304	7304		54.722	5.1863	1	2743100			55280	7695	45651	45690	60351	60351					0.07256505771647426
SRYYLRVI	8	Unmodified	_SRYYLRVI_					0	0	0		nc|ENSG00000138119|Q9NZM1-3|MYOF	nc|ENSG00000138119|Q9NZM1-3|MYOF	nc|ENSG00000138119|Q9NZM1-3|MYOF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.2861328125	2	535.311284	1068.60801	-1.7928	-0.00095968	-2.3748	-0.0012712	-4.1675	-0.0022309	535.3098731915815	53.637	0.51009	50.389	50.212	50.722	-3.2474					11	9	2	0	0	0	0.028476	1	3309	3309		94.006	3.6366	1	47746			55281	15042	45652	45691	60352	60352					0.07645441951149223
SRYYLRVI	8	Unmodified	_SRYYLRVI_					0	0	0		nc|ENSG00000138119|Q9NZM1-3|MYOF	nc|ENSG00000138119|Q9NZM1-3|MYOF	nc|ENSG00000138119|Q9NZM1-3|MYOF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	535.311284	1068.60801	-2.043	-0.0010936	-2.3301	-0.0012473	-4.3731	-0.002341	535.3097825164426	53.367	0.39677	50.553	50.28	50.677	-2.8139	0.081996	3.2684E-05	NaN	94.006	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16519			55282	15042	45652	45691							0.07645441951149223
SSAAPDGLLSG	11	Unmodified	_SSAAPDGLLSG_					0	0	0			REV__ENSG00000105656|ENST00000262809|ELL	REV__ENSG00000105656|ENST00000262809|ELL	MULTI-MSMS	OvCa9_classI_Rep2	2	487.7456359863281	2	487.743096	973.47164	2.4472	0.0011936	2.3478	0.0011451	4.795	0.0023387	487.74399401921767	27.829	0.93581	25.12	24.742	25.677	-2.7097					37	20	3	0	0	0	0.56722	1	521	521		47.657	1.6851	1	33068	+		55283	17743	45653	45692	60353	60353					-0.016157170700239476
SSACNCTQ	8	Unmodified	_SSACNCTQ_					0	0	0			REV__PRR16|p.I278Yfs*47|1|0.17|ENSG00000184838|chr5:120686618-120686619|-/C|frameshift_variant	REV__PRR16|p.I278Yfs*47|1|0.17|ENSG00000184838|chr5:120686618-120686619|-/C|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.237060546875	2	407.14692	812.279288	1.1615	0.0004729	3.9319	0.0016009	5.0935	0.0020738	407.1484500934823	56.771	0.59879	56.771	56.581	57.18	0					26	13	3	0	0	0	0.028476	1	4772	4772		25.574	0	1	504450	+		55284	29320	45654	45693	60354	60354					-0.13436079013376911
SSAEPRFSH	9	Unmodified	_SSAEPRFSH_					0	0	0			REV__SEMA5B|p.P1143S|1|0.17|ENSG00000082684|chr3:122910172-122910172|G/A|missense_variant	REV__SEMA5B|p.P1143S|1|0.17|ENSG00000082684|chr3:122910172-122910172|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.2421875	2	509.241055	1016.46756	-0.091502	-4.6596E-05	-1.0448	-0.00053207	-1.1363	-0.00057867	509.24024870249735	61.537	2.1867	58.08	57.216	59.403	-3.4577					77	44	2	0	0	0	0.37135	1	4246	4246		54.776	1.8396	1	1687200	+		55285	29352	45655	45694	60355	60355					-0.04001761773088219
SSAFPCFA	8	Unmodified	_SSAFPCFA_					0	0	0			REV__ENSG00000101361|ENST00000329276|NOP56	REV__ENSG00000101361|ENST00000329276|NOP56	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.8805847167969	2	415.181089	828.347625	-0.19071	-7.9178E-05	-2.1321	-0.0008852	-2.3228	-0.00096438	415.18023416224315	28.066	0.24919	28.066	27.891	28.14	0					7	4	2	0	0	0	0.028476	1	883	883		3.6843	0	1	27193	+		55286	17495	45656	45695	60356	60356					-0.07341466371224215
SSAGLIYIDP	10	Unmodified	_SSAGLIYIDP_					0	0	0		AFF1-UBR5|1|fusion;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	AFF1-UBR5|1|fusion	AFF1-UBR5|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.3040161132812	2	518.27149	1034.52843	0.40621	0.00021053	2.8578	0.0014811	3.264	0.0016916	518.2728118466988	123.72	0.98438	123.49	123.09	124.08	-0.23193					36	19	3	0	0	0	0.026849	1	12073	12073		40.778	6.6056	1	47833			55287	45	45657	45696	60357	60357					0.012543304864720994
SSAGWSEPSDP	11	Unmodified	_SSAGWSEPSDP_					0	0	0		nc|ENSG00000204577|O75022|LILRB3;ENSG00000204577|ENST00000445347|LILRB3;nc|ENSG00000204577|O75022-3|LILRB3;nc|ENSG00000204577|O75022-2|LILRB3;nc|ENSG00000244482|Q6PI73-2|LILRA6;nc|ENSG00000244482|Q6PI73|LILRA6;ENSG00000244482|ENST00000396365|LILRA6	nc|ENSG00000204577|O75022|LILRB3	nc|ENSG00000204577|O75022|LILRB3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.3104248046875	2	560.233093	1118.45163	0.26244	0.00014703	-0.3008	-0.00016852	-0.038359	-2.149E-05	560.2328393751062	71.058	1.2131	67.602	67.393	68.607	-3.4563					54	24	4	0	0	0	0.025806	1	5477	5477		18.262	2.929	1	340950			55288	9004	45658	45697	60358	60358					-0.10285512800646757
SSAGWSEPSDP	11	Unmodified	_SSAGWSEPSDP_					0	0	0		nc|ENSG00000204577|O75022|LILRB3;ENSG00000204577|ENST00000445347|LILRB3;nc|ENSG00000204577|O75022-3|LILRB3;nc|ENSG00000204577|O75022-2|LILRB3;nc|ENSG00000244482|Q6PI73-2|LILRA6;nc|ENSG00000244482|Q6PI73|LILRA6;ENSG00000244482|ENST00000396365|LILRA6	nc|ENSG00000204577|O75022|LILRB3	nc|ENSG00000204577|O75022|LILRB3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	560.233093	1118.45163	0.50233	0.00028142	-0.85493	-0.00047896	-0.3526	-0.00019754	560.232510778217	70.28	0.90645	67.71	67.311	68.218	-2.5707	0.079699	-0.00057039	NaN	18.262	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49762			55289	9004	45658	45697							-0.10285512800646757
SSAKIKREP	9	Unmodified	_SSAKIKREP_					0	0	0		FRMD5|p.P353Yfs*69|1|0.07|ENSG00000171877|chr15:43883785-43883786|-/AGACAGTGGTAAGATATGCAGATAGCAA|frameshift_variant;nc|ENSG00000171877|Q7Z6J6-2|FRMD5;ENSG00000171877|ENST00000417257|FRMD5	FRMD5|p.P353Yfs*69|1|0.07|ENSG00000171877|chr15:43883785-43883786|-/AGACAGTGGTAAGATATGCAGATAGCAA|frameshift_variant	FRMD5|p.P353Yfs*69|1|0.07|ENSG00000171877|chr15:43883785-43883786|-/AGACAGTGGTAAGATATGCAGATAGCAA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7735595703125	2	508.298373	1014.58219	2.0895	0.0010621	-2.2525	-0.001145	-0.16301	-8.2859E-05	508.29664468947306	76.606	0.39417	76.606	76.405	76.799	0					16	9	2	0	0	0	0.027462	1	7684	7684		19.997	0	1	271170			55290	7246	45659	45698	60359	60359					0.07548547708847764
SSAKIKREP	9	Unmodified	_SSAKIKREP_					0	0	0		FRMD5|p.P353Yfs*69|1|0.07|ENSG00000171877|chr15:43883785-43883786|-/AGACAGTGGTAAGATATGCAGATAGCAA|frameshift_variant;nc|ENSG00000171877|Q7Z6J6-2|FRMD5;ENSG00000171877|ENST00000417257|FRMD5	FRMD5|p.P353Yfs*69|1|0.07|ENSG00000171877|chr15:43883785-43883786|-/AGACAGTGGTAAGATATGCAGATAGCAA|frameshift_variant	FRMD5|p.P353Yfs*69|1|0.07|ENSG00000171877|chr15:43883785-43883786|-/AGACAGTGGTAAGATATGCAGATAGCAA|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	508.298373	1014.58219	-0.58427	-0.00029698	0.66907	0.00034009	0.084802	4.3105E-05	508.297363939852	79.478	0.90687	76.727	76.37	77.277	-2.7514	0.060312	0.0020731	NaN	25.574	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18226			55291	7246	45659	45698							0.07548547708847764
SSALLVLEAQ	10	Unmodified	_SSALLVLEAQ_					0	0	0		nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;DST|p.E3356Afs*12|1|0.31|ENSG00000151914|chr6:56535225-56535226|-/CCAG|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;DST|p.A2546Pfs*8|1|0.39|ENSG00000151914|chr6:56560327-56560327|C/-|frameshift_variant	nc|ENSG00000151914|Q03001|DST	nc|ENSG00000151914|Q03001|DST	MULTI-MSMS	OvCa9_classI_Rep3	3	515.7920532226562	2	515.792589	1029.57063	1.8377	0.00094786	-2.2769	-0.0011744	-0.43924	-0.00022656	515.7912976606297	121.49	1.5717	120.46	120.17	121.74	-1.0286					56	29	3	0	0	0	0.48398	1	9313	9313		56.434	1.7114	1	182990			55292	5594	45660	45699	60360	60360					0.057023058948516336
SSAPIAPSASS	11	Unmodified	_SSAPIAPSASS_					0	0	0		ENSG00000151615|ENST00000281321|POU4F2	ENSG00000151615|ENST00000281321|POU4F2	ENSG00000151615|ENST00000281321|POU4F2	MULTI-MSMS	OvCa9_classI_Rep2	2	487.74749755859375	2	487.743096	973.47164	2.4472	0.0011936	2.3478	0.0011451	4.795	0.0023387	487.74399401921767	27.829	0.93581	25.12	24.742	25.677	-2.7097					37	20	3	0	0	0	0.72479	1	498	498		18.262	4.125	1	33068			55293	5567	45661	45700	60361	60361					-0.016157170700353163
SSAPTMLLIS	10	Unmodified	_SSAPTMLLIS_					0	0	0			REV__tr|A0A553SHX4|A0A553SHX4_NIACIPTSsugartransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_13795PE=4SV=1	REV__tr|A0A553SHX4|A0A553SHX4_NIACIPTSsugartransportersubunitIICOS=NialliacirculansOX=1397GN=CEQ21_13795PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.76141357421875	2	510.275718	1018.53688	1.3905	0.00070952	-2.2618	-0.0011542	-0.87138	-0.00044464	510.2741120877936	111.31	0.63031	111.31	111.11	111.74	0					19	13	2	0	0	0	0.026734	1	12668	12668		18.262	0	1	138350	+		55294	29848	45662	45701	60362	60362					0.028355611314509588
SSAPWAPVE	9	Unmodified	_SSAPWAPVE_					0	0	0			REV__sp|P16801|UL95_HCMVAProteinUL95OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL95PE=3SV=1	REV__sp|P16801|UL95_HCMVAProteinUL95OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL95PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.77154541015625	2	472.229625	942.444697	-0.33043	-0.00015604	-2.8814	-0.0013607	-3.2118	-0.0015167	472.22765138879373	42.632	0.25641	42.632	42.453	42.709	0					7	5	2	0	0	0	0.027456	1	2748	2748		10.866	0	1	44378	+		55295	29436	45663	45702	60363	60363					-0.028827808905703023
SSASLLSLLL	10	Unmodified	_SSASLLSLLL_					0	0	0			REV__HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|31|2|sense	REV__HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|31|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.7536315917969	2	502.305332	1002.59611	-0.34393	-0.00017276	0.8901	0.0004471	0.54617	0.00027434	502.3057335064158	58.819	0.277	58.819	58.655	58.932	0					11	6	2	0	0	0	0.026752	1	5022	5022		9.7057	0	1	370790	+		55296	16091	45664	45703	60364	60364					0.09491780417295104
SSATIATII	9	Unmodified	_SSATIATII_					0	0	0		tr|A0A7D6ZVX2|A0A7D6ZVX2_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15485PE=3SV=1	tr|A0A7D6ZVX2|A0A7D6ZVX2_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15485PE=3SV=1	tr|A0A7D6ZVX2|A0A7D6ZVX2_9CLOTExtracellularsolute-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15485PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	439.68939208984375	2	438.755475	875.496398	0.81558	0.00035784	0.99625	0.00043711	1.8118	0.00079495	438.75582244107227	58.713	0.52708	58.713	58.446	58.973	0					30	12	3	0	0	0	0.027462	1	4974	4974		3.41	0	1	1041300			55297	35818	45665	45704	60365	60365					0.05366962803338993
SSATSFFSPL	10	Unmodified	_SSATSFFSPL_					0	0	0			REV__ENSG00000198722|ENST00000635942|UNC13B	REV__ENSG00000198722|ENST00000635942|UNC13B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.2368774414062	2	522.25584	1042.49713	-1.8803	-0.00098198	-2.3719	-0.0012387	-4.2522	-0.0022207	522.7545368766422	146.99	0.19875	145.56	145.38	145.58	-1.4357					5	3	2	0	0	0	0.026915	1	14443	14443		14.865	0	1	3136.8	+		55298	23052	45666	45705	60366	60366					-0.022422425476179342
SSATYLGSL	9	Unmodified	_SSATYLGSL_					0	0	0		ENST00000461171.1_1_20:44751345-44755513:+|nuORF	ENST00000461171.1_1_20:44751345-44755513:+|nuORF	ENST00000461171.1_1_20:44751345-44755513:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	448.9123229980469	2	449.729458	897.444362	0.20851	9.3775E-05	1.9876	0.00089386	2.1961	0.00098764	449.72987476162024	35.702	0.59919	35.702	35.52	36.119	0					21	12	3	0	0	0	0.027462	1	1801	1801		16.473	0	1	81228			55299	12171	45667	45706	60367	60367					-0.008462006104196007
SSAYTQNDT	9	Unmodified	_SSAYTQNDT_					0	0	0			REV__nc|ENSG00000152583|Q14515-2|SPARCL1	REV__nc|ENSG00000152583|Q14515-2|SPARCL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2640686035156	2	493.706711	985.398869	-0.48071	-0.00023733	0.88268	0.00043579	0.40197	0.00019846	493.70695537391566	41.22	0.44663	41.22	41.059	41.505	0					19	9	4	0	0	0	0.027462	1	2538	2538		15.642	0	1	115450	+		55300	20296	45668	45707	60368	60368					-0.09441470863464474
SSCTESFIKSE	11	Unmodified	_SSCTESFIKSE_					0	0	0			REV__nc|ENSG00000150045|Q9NZS2-2|KLRF1	REV__nc|ENSG00000150045|Q9NZS2-2|KLRF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.69610595703125	3	406.516666	1216.52817	0.30336	0.00012332	3.5248	0.0014329	3.8282	0.0015562	406.51794889833377	37.05	0.41254	37.05	36.885	37.298	0					18	8	3	0	0	0	0.026033	1	2028	2028		22.562	8.4756	1	150050	+		55301	20182	45669	45708	60369	60369					-0.0714345729568322
SSDDGKTRVKL	11	Unmodified	_SSDDGKTRVKL_					0	0	0		nc|ENSG00000172554|Q9NY99-2|SNTG2;ENSG00000172554|ENST00000308624|SNTG2	nc|ENSG00000172554|Q9NY99-2|SNTG2	nc|ENSG00000172554|Q9NY99-2|SNTG2	MULTI-MSMS	OvCa99_classI_Rep5	1	402.5547180175781	3	402.554331	1204.64116	0.65379	0.00026319	0.28936	0.00011648	0.94315	0.00037967	402.5544892313041	37.554	1.1886	37.554	37.251	38.44	0					69	25	6	0	0	0	0.60323	1	2080	2080		38.714	4.7925	1	4398100			55302	7305	45670	45709	60370	60370					0.047029792125158565
SSEIIPEGH	9	Unmodified	_SSEIIPEGH_					0	0	0		tr|A0A7D6ZJJ5|A0A7D6ZJJ5_9CLOTVitaminB12-dependentribonucleotidereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08775PE=3SV=1	tr|A0A7D6ZJJ5|A0A7D6ZJJ5_9CLOTVitaminB12-dependentribonucleotidereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08775PE=3SV=1	tr|A0A7D6ZJJ5|A0A7D6ZJJ5_9CLOTVitaminB12-dependentribonucleotidereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08775PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.3150329589844	2	484.737814	967.461075	0.044327	2.1487E-05	-0.15813	-7.6652E-05	-0.1138	-5.5165E-05	484.7377604475603	64.973	0.91994	61.488	61.114	62.034	-3.4854					37	18	3	0	0	0	0.027462	1	4666	4666		18.324	0	1	157570			55303	35643	45671	45710	60371	60371					-0.023956997244681588
SSEPGCSAQ	9	Unmodified	_SSEPGCSAQ_					0	0	0			REV__nc|ENSG00000184343|Q9UPE1-3|SRPK3	REV__nc|ENSG00000184343|Q9UPE1-3|SRPK3	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1713562011719	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.44568	2	1550	1550;1787		47.657	10.498	1	60065	+		55304	22422	45672	45711	60372;60373	60372					-0.10924467452775843
SSESSKLSSKS	11	Unmodified	_SSESSKLSSKS_					0	0	0		SCN9A|p.T465S|1|0.3|ENSG00000169432|chr2:166286545-166286545|T/A|missense_variant	SCN9A|p.T465S|1|0.3|ENSG00000169432|chr2:166286545-166286545|T/A|missense_variant	SCN9A|p.T465S|1|0.3|ENSG00000169432|chr2:166286545-166286545|T/A|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	563.7838134765625	2	563.78295	1125.55135	-0.53782	-0.00030322	1.4964	0.00084363	0.95855	0.00054041	563.7837159059117	27.866	0.64911	27.866	27.691	28.34	0					28	12	4	0	0	0	0.5804	1	857	857		46.457	4.0606	1	765600			55305	32802	45673	45712	60374	60374					-0.00640695186712037
SSESVKVL	8	Unmodified	_SSESVKVL_					0	0	0			REV__ENSG00000120322|ENST00000239444|PCDHB8	REV__ENSG00000120322|ENST00000239444|PCDHB8	MULTI-MSMS	OvCa99_classI_Rep5	1	424.7413330078125	2	424.739825	847.465098	-0.08791	-3.7339E-05	1.894	0.00080446	1.8061	0.00076712	424.7404827698809	61.888	1.6341	61.888	61.585	63.219	0					79	39	4	0	0	0	0.71369	1	5466	5466		40.573	3.4135	1	5904200	+		55306	18496	45674	45713	60375	60375					0.03526389769240268
SSFLPTPSLPS	11	Unmodified	_SSFLPTPSLPS_					0	0	0		ENST00000601799.5_1_19:57742659-57743507:+|nuORF	ENST00000601799.5_1_19:57742659-57743507:+|nuORF	ENST00000601799.5_1_19:57742659-57743507:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	566.7969970703125	2	566.797872	1131.58119	0.2417	0.000137	-0.58136	-0.00032951	-0.33965	-0.00019252	566.7974040314294	124.63	1.4318	124.4	123.98	125.41	-0.23193					67	28	4	0	0	0	0.5466	1	12124	12124		49.536	0.094497	1	176250			55307	14229	45675	45714	60376	60376					0.02066288549303863
SSFLPTPSLPS	11	Unmodified	_SSFLPTPSLPS_					0	0	0		ENST00000601799.5_1_19:57742659-57743507:+|nuORF	ENST00000601799.5_1_19:57742659-57743507:+|nuORF	ENST00000601799.5_1_19:57742659-57743507:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	566.797872	1131.58119	1.3545	0.00076773	-1.2209	-0.000692	0.13361	7.5729E-05	566.7970598345388	125.23	1.4056	124.18	123.79	125.2	-1.0519	-0.060182	-0.00071618	NaN	49.536	57	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184760			55308	14229	45675	45714							0.02066288549303863
SSFLPTPSLPS	11	Unmodified	_SSFLPTPSLPS_					0	0	0		ENST00000601799.5_1_19:57742659-57743507:+|nuORF	ENST00000601799.5_1_19:57742659-57743507:+|nuORF	ENST00000601799.5_1_19:57742659-57743507:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	566.797872	1131.58119	-1.2278	-0.00069593	0.97194	0.00055089	-0.25589	-0.00014504	566.7982232856629	125.56	1.5966	124.14	123.57	125.17	-1.4143	-0.096997	0.0017696	NaN	49.536	71	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171780			55309	14229	45675	45714							0.02066288549303863
SSFSGLLRK	9	Unmodified	_SSFSGLLRK_					0	0	0		ENSG00000162783|ENST00000367577|IER5	ENSG00000162783|ENST00000367577|IER5	ENSG00000162783|ENST00000367577|IER5	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.7873840332031	2	497.787641	993.56073	1.199	0.00059685	-1.2442	-0.00061935	-0.045192	-2.2496E-05	497.7868585428559	67.764	0.87871	64.274	64.037	64.916	-3.4902					43	17	4	0	0	0	0.3249	1	4997	4997		60.118	1.3363	1	348370			55310	6236	45676	45715	60377	60377					0.06369162680130103
SSFSPGKE	8	Unmodified	_SSFSPGKE_					0	0	0		nc|ENSG00000175697|Q8NFN8-2|GPR156;ENSG00000175697|ENST00000464295|GPR156	nc|ENSG00000175697|Q8NFN8-2|GPR156	nc|ENSG00000175697|Q8NFN8-2|GPR156	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.7513732910156	2	419.7007	837.386848	0.39895	0.00016744	1.2139	0.00050946	1.6128	0.0006769	419.7007661799041	62.215	0.25603	62.215	62.038	62.294	0					8	5	2	0	0	0	0.028476	1	5524	5524		44.117	1.7207	1	153120			55311	7560	45677	45716	60378	60378					-0.03835042815990164
SSGFIHVV	8	Unmodified	_SSGFIHVV_					0	0	0		L1MB2_dup734|chr2:41391481-41393110:-|2.5038669870492565|0.0056028466714037|8.8|420.0|70|1|anti-sense	L1MB2_dup734|chr2:41391481-41393110:-|2.5038669870492565|0.0056028466714037|8.8|420.0|70|1|anti-sense	L1MB2_dup734|chr2:41391481-41393110:-|2.5038669870492565|0.0056028466714037|8.8|420.0|70|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	423.9226989746094	2	423.229428	844.444303	-1.21	-0.00051211	-3.1738	-0.0013433	-4.3838	-0.0018554	423.2279127794753	44.084	0.65385	41.077	40.891	41.545	-3.0074					15	12	2	0	0	0	0.028476	1	2183	2183		13.775	0	1	20000			55312	14590	45678	45717	60379	60379					0.015858441802379275
SSGKRIGY	8	Unmodified	_SSGKRIGY_					0	0	0			REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|291|3|anti-sense	REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|291|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	433.7469787597656	2	434.237784	866.461016	0.16127	7.003E-05	0.35937	0.00015605	0.52065	0.00022608	434.23779001666526	48.261	1.1383	45.154	44.938	46.076	-3.1077					31	21	2	0	0	0	0.028476	1	2668	2668		26.796	17.974	1	38604	+		55313	28471	45679	45718	60380	60380					0.022443450661853603
SSGPERIL	8	Unmodified	_SSGPERIL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;HNRNPK|p.Y280Mfs*4|1|0.05|ENSG00000165119|chr9:83971997-83971997|A/-|frameshift_variant;HNRNPK-PTMS|1|fusion	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	OvCa99_classI_Rep5	1	429.7386779785156	2	429.737617	857.460681	0.13245	5.6917E-05	0.052856	2.2714E-05	0.1853	7.9631E-05	429.7375599198805	60.779	1.15	60.779	60.392	61.542	0					80	26	5	0	0	0	0.21559	2	5332	5302;5332		122.18	28.981	1	7853200			55314	6523	45680	45719	60381;60382	60382					0.026249253463333844
SSGPERSI	8	Unmodified	_SSGPERSI_					0	0	0		ENST00000536336.5_1_11:18633859-18655855:-|nuORF;nc|ENSG00000179119|Q68D10-2|SPTY2D1;ENSG00000179119|ENST00000336349|SPTY2D1	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	ENST00000536336.5_1_11:18633859-18655855:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	416.7117614746094	2	416.711599	831.408646	-0.39467	-0.00016446	0.44633	0.00018599	0.051659	2.1527E-05	416.71166874295824	36.875	0.94765	36.875	36.397	37.344	0					42	20	4	0	0	0	0.42405	1	1975	1975		85.161	20.954	1	568260			55315	7804	45681	45720	60383	60383					-0.01380238067429218
SSGPLLEECHR	11	Unmodified	_SSGPLLEECHR_					0	0	0			REV__nc|ENSG00000082684|Q9P283-2|SEMA5B	REV__nc|ENSG00000082684|Q9P283-2|SEMA5B	MULTI-MSMS	OvCa99_classI_Rep5	1	614.2944946289062	2	614.292962	1226.57137	1.2797	0.00078614	-2.1092	-0.0012957	-0.82946	-0.00050953	614.2915307674748	144.77	1.2218	144.77	144.35	145.58	0					55	25	3	0	0	0	0.26821	1	16913	16913		70.816	21.28	1	626710	+		55316	17089	45682	45721	60384	60384					-0.032852227277544443
SSGPSRYV	8	Unmodified	_SSGPSRYV_					0	0	0		nc|ENSG00000051596|Q96J01-2|THOC3;ENSG00000051596|ENST00000265097|THOC3	nc|ENSG00000051596|Q96J01-2|THOC3	nc|ENSG00000051596|Q96J01-2|THOC3	MULTI-MSMS	OvCa99_classI_Rep5	1	426.7139587402344	2	426.714142	851.413731	-1.0235	-0.00043676	1.1511	0.0004912	0.12759	5.4445E-05	426.71445226028976	44.006	0.61045	44.006	43.694	44.305	0					27	13	4	0	0	0	0.67872	1	2954	2954		47.657	5.2612	1	408340			55317	1189	45683	45722	60385	60385					-0.01791934204811696
SSGVGYLY	8	Unmodified	_SSGVGYLY_					0	0	0		ENSG00000184497|ENST00000375353|TMEM255B	ENSG00000184497|ENST00000375353|TMEM255B	ENSG00000184497|ENST00000375353|TMEM255B	MULTI-MSMS	OvCa9_classI_Rep4_	4	423.206787109375	2	423.205618	844.396684	-0.73733	-0.00031204	0.89497	0.00037875	0.15764	6.6713E-05	423.20588256131856	52.786	1.5652	49.578	49.145	50.71	-3.208					64	30	3	0	0	0	0.65582	1	3182	3182		52.299	5.5327	1	421300			55318	8164	45684	45723	60386	60386					-0.031738548106091
SSGVGYLY	8	Unmodified	_SSGVGYLY_					0	0	0		ENSG00000184497|ENST00000375353|TMEM255B	ENSG00000184497|ENST00000375353|TMEM255B	ENSG00000184497|ENST00000375353|TMEM255B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	423.205618	844.396684	-1.0932	-0.00046263	1.1918	0.00050437	0.098624	4.1738E-05	423.2060095260098	52.709	1.1352	49.896	49.542	50.677	-2.8139	0.159	0.0001522	NaN	52.299	43	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68976			55319	8164	45684	45723							-0.031738548106091
SSHSLQPK	8	Unmodified	_SSHSLQPK_					0	0	0			REV__nc|ENSG00000122257|Q7Z6E9-4|RBBP6	REV__nc|ENSG00000122257|Q7Z6E9-4|RBBP6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.6031188964844	2	442.235242	882.45593	-2.0022	-0.00088545	0.89401	0.00039536	-1.1082	-0.00049009	442.23521128338575	50.059	0.52133	46.918	46.715	47.236	-3.1416					12	9	2	0	0	0	0.028476	1	2884	2884		15.642	0	1	14212	+		55320	18585	45685	45724	60387	60387					0.010000412035651607
SSIGKEPMTL	10	Unmodified	_SSIGKEPMTL_					0	0	0		ENST00000506850.5_1_5:35871184-35871223:+|nuORF	ENST00000506850.5_1_5:35871184-35871223:+|nuORF	ENST00000506850.5_1_5:35871184-35871223:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	531.7793579101562	2	531.778625	1061.5427	-1.5045	-0.00080004	-1.9483	-0.001036	-3.4527	-0.0018361	531.777424078143	121.69	0.84148	121.5	121.25	122.09	-0.19718					37	16	3	0	0	0	0.44722	1	11767	11767		61.691	16.669	1	53232			55321	12915	45686	45725	60388	60388					0.014386596431222642
SSIRLISALI	10	Unmodified	_SSIRLISALI_					0	0	0			REV__ENSG00000186881|ENST00000334726|OR13F1	REV__ENSG00000186881|ENST00000334726|OR13F1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3123168945312	2	536.839874	1071.66519	-0.25306	-0.00013585	4.1288	0.0022165	3.8757	0.0020807	536.842757424326	51.023	0.21336	51.023	50.907	51.12	0					6	4	2	0	0	0	0.027033	1	3898	3898		33.922	6.0394	1	51954	+		55322	22618	45687	45726	60389	60389					0.13222864436852433
SSKFITKTL	9	Unmodified	_SSKFITKTL_					0	0	0			REV__ENST00000556611.5_1_14:32586469-32619125:+|nuORF	REV__ENST00000556611.5_1_14:32586469-32619125:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	512.8051147460938	2	512.8055	1023.59645	0.48569	0.00024906	-0.496	-0.00025435	-0.010311	-5.2876E-06	512.8051194113467	130.74	1.1749	129.61	129.32	130.49	-1.1249					50	23	3	0	0	0	0.51865	1	10403	10403		40.778	3.6191	1	153750	+		55323	27566	45688	45727	60390	60390					0.08559200137142398
SSKGKTVT	8	Unmodified	_SSKGKTVT_					0	0	0			REV__nc|ENSG00000100473|O43405-2|COCH	REV__nc|ENSG00000100473|O43405-2|COCH	MULTI-MSMS	OvCa9_classI_Rep2	2	404.2325134277344	2	404.232168	806.449782	1.3505	0.00054594	0.46264	0.00018701	1.8132	0.00073295	404.23224424215823	134.98	1.1763	134.75	134.34	135.52	-0.22696					59	23	3	0	0	0	0.74209	1	13337	13337		12.959	0.75233	1	117390	+		55324	17421	45689	45728	60391	60391					0.03881522972062612
SSKKKRWKWPK	11	Unmodified	_SSKKKRWKWPK_					0	0	0			REV__ENST00000463428.5_1_1:28696332-28793284:+|nuORF	REV__ENST00000463428.5_1_1:28696332-28793284:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	486.95831298828125	3	486.961256	1457.86194	-7.2825	-0.0035463	2.5142	0.0012243	-4.7683	-0.002322	486.9623381995862	161.08	3.4384	159.71	158.52	161.96	-1.3692					219	70	4	0	0	0	0.7252	1	14076	14076		12.957	0	1	133400	+		55325	23129	45690	45729	60392	60392					0.15132089050416653
SSKKVTSA	8	Unmodified	_SSKKVTSA_					0	0	0			REV__ENSG00000187833|ENST00000409561|C2orf78	REV__ENSG00000187833|ENST00000409561|C2orf78	MULTI-MSMS	OvCa9_classI_Rep4_	4	404.2327575683594	2	404.232168	806.449782	4.3532	0.0017597	-2.4511	-0.00099081	1.9021	0.0007689	404.23103020545994	135.7	1.0357	134.16	133.81	134.84	-1.5437					47	20	3	0	0	0	0.75723	1	13129	13129		23.042	4.7181	1	317610	+		55326	22670	45691	45730	60393	60393					0.038815229720512434
SSKLLLHQII	10	Unmodified	_SSKLLLHQII_					0	0	0		ENSG00000183309|ENST00000526926|ZNF623;nc|ENSG00000183309|O75123|ZNF623	ENSG00000183309|ENST00000526926|ZNF623	ENSG00000183309|ENST00000526926|ZNF623	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.8804321289062	2	576.360973	1150.70739	-0.37157	-0.00021416	0.028015	1.6147E-05	-0.34356	-0.00019801	576.3608118510463	130.56	0.4446	129.45	129.23	129.67	-1.1121					9	8	2	0	0	0	0.026734	1	10361	10361		47.657	0	1	11429			55327	8064	45692	45731	60394	60394					0.13806839845233299
SSKREPVK	8	Unmodified	_SSKREPVK_					0	0	0			REV__ENSG00000135540|ENST00000343505|NHSL1	REV__ENSG00000135540|ENST00000343505|NHSL1	MULTI-MSMS	OvCa9_classI_Rep2	2	465.77142333984375	2	465.771991	929.529429	-1.7937	-0.00083544	2.0494	0.00095456	0.25575	0.00011912	465.772650443139	37.968	1.5813	35.259	35.026	36.607	-2.7097					42	31	3	0	0	0	0.74229	1	1752	1752		30.504	1.3541	1	85602	+		55328	19299	45693	45732	60395	60395					0.061845896460340555
SSKREPVK	8	Unmodified	_SSKREPVK_					0	0	0			REV__ENSG00000135540|ENST00000343505|NHSL1	REV__ENSG00000135540|ENST00000343505|NHSL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.77215576171875	2	465.771991	929.529429	0.52286	0.00024353	-0.56953	-0.00026527	-0.046666	-2.1736E-05	465.7715531655395	37.895	1.4402	35.003	34.541	35.982	-2.8925					63	28	4	0	0	0	0.6345	1	1424	1424		56.721	9.0637	1	305700	+		55329	19299	45693	45732	60396	60396					0.061845896460340555
SSKSKSRTSP	10	Unmodified	_SSKSKSRTSP_					0	0	0		ENSG00000112246|ENST00000369208|SIM1	ENSG00000112246|ENST00000369208|SIM1	ENSG00000112246|ENST00000369208|SIM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.276611328125	2	532.78837	1063.56219	1.7398	0.00092696	3.7305	0.0019876	5.4704	0.0029146	532.7903961058977	78.772	0.28652	78.772	78.668	78.955	0					10	6	2	0	0	0	0.026867	1	8003	8003		42.864	7.246	1	294650			55330	2890	45694	45733	60397	60397					0.032947519782510426
SSKSKSRTSP	10	Unmodified	_SSKSKSRTSP_					0	0	0		ENSG00000112246|ENST00000369208|SIM1	ENSG00000112246|ENST00000369208|SIM1	ENSG00000112246|ENST00000369208|SIM1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	532.78837	1063.56219	-0.65143	-0.00034707	3.6991	0.0019708	3.0476	0.0016238	532.7901744431697	80.791	1.6042	79.096	78.321	79.925	-1.6951	0.20611	0.00042675	NaN	42.864	76	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176700			55331	2890	45694	45733							0.032947519782510426
SSKSKSRTSP	10	Unmodified	_SSKSKSRTSP_					0	0	0		ENSG00000112246|ENST00000369208|SIM1	ENSG00000112246|ENST00000369208|SIM1	ENSG00000112246|ENST00000369208|SIM1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	532.78837	1063.56219	0.0044567	2.3745E-06	2.8183	0.0015016	2.8228	0.0015039	532.7898442076811	81.249	1.7785	78.927	78.234	80.012	-2.3226	0.036365	-0.00051176	NaN	42.864	72	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	437790			55332	2890	45694	45733							0.032947519782510426
SSKWDRLWRLR	11	Unmodified	_SSKWDRLWRLR_					0	0	0			REV__nc|ENSG00000167757|Q9UBX7|KLK11	REV__nc|ENSG00000167757|Q9UBX7|KLK11	MULTI-SECPEP	OvCa9_classI_Rep3	3	501.6343688964844	3	501.616148	1501.82661	-7.1471	-0.0035851	2.0194	0.0010129	-5.1278	-0.0025722	501.61708649929864	161.16	1.6204	159.79	158.72	160.34	-1.3692					45	31	2	0	0	0	0.026488	1	13963	13963		10.104	3.783	1	12483	+		55333	28986	45695	45734	60398	60398					0.0957742652262823
SSLEWHPFT	9	Unmodified	_SSLEWHPFT_					0	0	0		NOX3|p.Q345Pfs*83|2|0.09|ENSG00000074771|chr6:155428905-155428906|-/G|frameshift_variant;ENSG00000074771|ENST00000159060|NOX3	NOX3|p.Q345Pfs*83|2|0.09|ENSG00000074771|chr6:155428905-155428906|-/G|frameshift_variant	NOX3|p.Q345Pfs*83|2|0.09|ENSG00000074771|chr6:155428905-155428906|-/G|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.7966918945312	2	552.261456	1102.50836	-0.60416	-0.00033365	-0.13999	-7.7314E-05	-0.74415	-0.00041097	552.2613163356195	24.592	1.7054	24.592	24.188	25.893	0					38	33	2	0	0	0	0.027462	1	548	548		53.351	2.016	1	20268			55334	1518	45696	45735	60399	60399					-0.03879420453495186
SSLGETFAAGI	11	Unmodified	_SSLGETFAAGI_					0	0	0			REV__ENSG00000141424|ENST00000269187|SLC39A6	REV__ENSG00000141424|ENST00000269187|SLC39A6	MULTI-MSMS	OvCa9_classI_Rep2	2	526.7692260742188	2	526.766571	1051.51859	0.77221	0.00040678	2.9265	0.0015416	3.6987	0.0019483	526.7680645869403	127.54	1.1845	127.31	126.94	128.12	-0.2359					50	23	3	0	0	0	0.60323	1	12475	12475		44.377	8.7589	1	208180	+		55335	19735	45697	45736	60400	60400					-0.005108575189069597
SSLPCIPL	8	Unmodified	_SSLPCIPL_					0	0	0		nc|ENSG00000164169|Q6P2P2-2|PRMT9;ENSG00000164169|ENST00000322396|PRMT9	nc|ENSG00000164169|Q6P2P2-2|PRMT9	nc|ENSG00000164169|Q6P2P2-2|PRMT9	MULTI-SECPEP	OvCa9_classI_Rep2	2	415.21148681640625	2	415.228039	828.441526	1.1215	0.00046568	3.6391	0.001511	4.7606	0.0019767	415.2294386444774	43.69	0.5949	40.98	40.658	41.253	-2.7097					17	11	2	0	0	0	0.028476	1	2417	2417		37.028	5.4496	1	17334			55336	6424	45698	45737	60401	60401					0.020442527310592595
SSLPSTEAHLK	11	Unmodified	_SSLPSTEAHLK_					0	0	0		ENST00000560494.1_1_15:59171947-59172195:-|nuORF	ENST00000560494.1_1_15:59171947-59172195:-|nuORF	ENST00000560494.1_1_15:59171947-59172195:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	585.3126831054688	2	585.311677	1168.6088	1.9616	0.0011482	-1.9247	-0.0011265	0.036928	2.1615E-05	585.3103918083111	85.925	0.60748	85.925	85.663	86.271	0					38	14	4	0	0	0	0.67529	1	9035	9035		37.812	0.65241	1	2015200			55337	13737	45699	45738	60402	60402					0.031241918095020083
SSLRGGPELS	10	Unmodified	_SSLRGGPELS_					0	0	0			REV__ENST00000373068.6_3_9:130870003-130870153:+|nuORF	REV__ENST00000373068.6_3_9:130870003-130870153:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.8244934082031	2	501.764363	1001.51417	-2.1205	-0.001064	1.9912	0.00099909	-0.12933	-6.4893E-05	501.76533625013275	61.987	0.54551	59.227	58.987	59.533	-2.7593					13	10	2	0	0	0	0.026891	1	4606	4606		39.253	18.771	1	15973	+		55338	25024	45700	45739	60403	60403					0.013476780582095671
SSLSLAWAVP	10	Unmodified	_SSLSLAWAVP_					0	0	0		nc|ENSG00000196411|P54760-2|EPHB4;ENST00000487222.5_1_7:100401085-100421908:-|nuORF;ENSG00000196411|ENST00000358173|EPHB4	nc|ENSG00000196411|P54760-2|EPHB4	nc|ENSG00000196411|P54760-2|EPHB4	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7809448242188	2	515.782025	1029.5495	-1.1501	-0.0005932	1.5396	0.00079408	0.38947	0.00020088	515.7828971636932	118.13	1.4732	116.79	116.16	117.63	-1.3444					62	27	4	0	0	0	0.43592	1	11062	11062		63.306	6.8725	1	136060			55339	8603	45701	45740	60404	60404					0.035903405860153725
SSLSLPVIGSA	11	Unmodified	_SSLSLPVIGSA_					0	0	0		ENSG00000179455|ENST00000314520|MKRN3	ENSG00000179455|ENST00000314520|MKRN3	ENSG00000179455|ENST00000314520|MKRN3	MULTI-MSMS	OvCa9_classI_Rep2	2	515.792724609375	2	515.792589	1029.57063	-0.78304	-0.00040389	0.44718	0.00023065	-0.33586	-0.00017323	515.7927187364921	120.88	1.4824	120.68	120.36	121.84	-0.19718					73	29	3	0	0	0	0.67529	1	11657	11657		37.812	2.6595	1	156340			55340	7823	45702	45741	60405	60405					0.057023058948516336
SSLSPLLVGV	10	Unmodified	_SSLSPLLVGV_					0	0	0			REV__ENST00000330651.10_1_22:50702225-50702900:-|nuORF	REV__ENST00000330651.10_1_22:50702225-50702900:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.2921142578125	2	486.292225	970.569897	-1.0418	-0.0005066	0.87582	0.0004259	-0.16594	-8.0694E-05	486.2924735979231	100.47	1.0086	98.208	97.875	98.883	-2.2665					53	19	4	0	0	0	0.53885	1	9004	9004		49.442	1.7842	1	275810	+		55341	24528	45703	45742	60406	60406					0.08343511245823265
SSLVAFRR	8	Unmodified	_SSLVAFRR_					0	0	0		ENST00000359944.10_1_3:179322640-179341825:+|nuORF	ENST00000359944.10_1_3:179322640-179341825:+|nuORF	ENST00000359944.10_1_3:179322640-179341825:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	468.27447509765625	2	468.274701	934.534849	-0.18832	-8.8183E-05	-0.20064	-9.3953E-05	-0.38895	-0.00018214	468.27446162973536	44.718	1.1836	44.718	44.44	45.624	0					57	26	4	0	0	0	0.7224	1	3067	3067		38.806	3.1879	1	1133200			55342	10763	45704	45743	60407	60407					0.06496313228512918
SSNAEDAF	8	Unmodified	_SSNAEDAF_					0	0	0		ENSG00000013503|ENST00000228347|POLR3B;nc|ENSG00000013503|Q9NW08-2|POLR3B	ENSG00000013503|ENST00000228347|POLR3B	ENSG00000013503|ENST00000228347|POLR3B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	421.25982666015625	2	420.67214	839.329727	2.0449	0.00086024	0.42442	0.00017854	2.4693	0.0010388	420.671401004425	136.19	0.24611	134.65	134.5	134.74	-1.5437					6	4	2	0	0	0	0.028476	1	13200	13200		29.15	7.1897	1	3182.9			55343	987	45705	45744	60408	60408					-0.09636510092377648
SSNFKFLYESQ	11	Unmodified	_SSNFKFLYESQ_					0	0	0			REV__TFDP3|p.K275Q|1|0.13|ENSG00000183434|chrX:133217437-133217437|T/G|missense_variant	REV__TFDP3|p.K275Q|1|0.13|ENSG00000183434|chrX:133217437-133217437|T/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.7626037597656	3	450.550587	1348.62993	-0.031153	-1.4036E-05	-3.3504	-0.0015095	-3.3815	-0.0015236	450.88241026745885	58.936	0.27077	58.936	58.812	59.083	0					9	6	2	0	0	0	0.026068	1	5023	5023		16.53	0.52308	1	328300	+		55344	29494	45706	45745	60409	60409					-0.030438428816069063
SSNKALLEM	9	Oxidation (M)	_SSNKALLEM(Oxidation (M))_		SSNKALLEM(1)		SSNKALLEM(100)	0	0	1		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.75762939453125	2	504.755149	1007.49575	-1.3809	-0.000697	1.5767	0.00079586	0.19586	9.8861E-05	504.75584059503456	54.92	1.0744	51.672	51.183	52.257	-3.2474					38	20	3	0	0	0	0.084918	1	3417	3417		101.25	26.998	1	401150			55345	1717	45707	45746	60410	60410		64			-0.007701999080040878
SSNKCFAKECH	11	Unmodified	_SSNKCFAKECH_					0	0	0			REV__ENSG00000166704|ENST00000551380|ZNF606	REV__ENSG00000166704|ENST00000551380|ZNF606	MULTI-MSMS	OvCa9_classI_Rep4_	4	627.2745361328125	2	627.273715	1252.53288	0.82367	0.00051667	-0.086497	-5.4258E-05	0.73717	0.00046241	627.2736883095587	33.578	2.7918	30.79	30.259	33.051	-2.7881					159	55	4	0	0	0	0.72576	1	884	884		5.5578	0	1	159330	+		55346	21214	45708	45747	60411	60411					-0.08328851633905288
SSNKILKSKE	10	Unmodified	_SSNKILKSKE_					0	0	0			REV__tr|A0A7D7A152|A0A7D7A152_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06195PE=3SV=1	REV__tr|A0A7D7A152|A0A7D7A152_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06195PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3272094726562	2	567.32987	1132.64519	-1.6483	-0.00093515	1.3836	0.00078493	-0.26477	-0.00015021	567.3305014697371	141.66	3.9446	141.43	139.35	143.3	-0.22697					200	79	3	0	0	0	0.75313	1	14189	14189		24.519	0.31644	1	83872	+		55347	32472	45709	45748	60412	60412					0.08417068706262398
SSPGRGPF	8	Unmodified	_SSPGRGPF_					0	0	0			REV__chr11:62559747-62566806|161|505.56|0.7|9.49|-|1|None,EEF1G|1	REV__chr11:62559747-62566806|161|505.56|0.7|9.49|-|1|None,EEF1G|1	MULTI-MSMS	OvCa99_classI_Rep5	1	402.7050476074219	2	402.703577	803.392602	0.99337	0.00040003	-0.72593	-0.00029233	0.26744	0.0001077	402.7031485541141	58.877	0.72214	58.877	58.655	59.377	0					42	18	4	0	0	0	0.59148	2	5024	5024;5053		65.803	17.888	1	5026700	+		55348	15862	45710	45749	60413;60414	60413					-0.016958995136633348
SSPHGGEVLE	10	Unmodified	_SSPHGGEVLE_					0	0	0			REV__nc|ENSG00000160460|Q9H254-2|SPTBN4	REV__nc|ENSG00000160460|Q9H254-2|SPTBN4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.25982666015625	2	506.240721	1010.46689	-1.084	-0.00054874	1.0358	0.00052438	-0.048118	-2.4359E-05	506.2409625552199	80.497	0.87907	77.786	77.566	78.445	-2.7106					27	17	2	0	0	0	0.02649	1	6656	6656		42.396	5.9494	1	47112	+		55349	20661	45711	45750	60415	60415					-0.037926012127968534
SSPHGGEVLE	10	Unmodified	_SSPHGGEVLE_					0	0	0			REV__nc|ENSG00000160460|Q9H254-2|SPTBN4	REV__nc|ENSG00000160460|Q9H254-2|SPTBN4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	506.240721	1010.46689	-0.044185	-2.2368E-05	1.0773	0.00054536	1.0331	0.00052299	506.24070710917556	79.724	0.30231	78.029	77.871	78.173	-1.6951	0.12155	2.2762E-05	NaN	42.396	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11039	+		55350	20661	45711	45750							-0.037926012127968534
SSPLESKCS	9	Unmodified	_SSPLESKCS_					0	0	0			REV__ENSG00000221946|ENST00000270310|FXYD7	REV__ENSG00000221946|ENST00000270310|FXYD7	MULTI-MSMS	OvCa99_classI_Rep5	1	469.222900390625	2	469.2184	936.422247	0.9832	0.00046134	-1.639	-0.00076905	-0.6558	-0.00030771	469.2174197304959	157.93	0.44632	157.93	157.65	158.1	0					15	8	2	0	0	0	0.60342	1	18521	18521		31.53	2.3803	1	86085	+		55351	23349	45712	45751	60416	60416					-0.04850748350486356
SSPLIQFHLL	10	Unmodified	_SSPLIQFHLL_					0	0	0		nc|ENSG00000183020|O94973-3|AP2A2;ENSG00000183020|ENST00000448903|AP2A2;nc|ENSG00000183020|O94973-2|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	nc|ENSG00000183020|O94973-3|AP2A2	MULTI-MSMS	OvCa9_classI_Rep2	2	577.8294677734375	2	577.832049	1153.64954	-1.6302	-0.000942	-1.9533	-0.0011287	-3.5835	-0.0020707	577.8307445349833	54.906	1.8409	52.093	51.573	53.414	-2.8139					89	36	4	0	0	0	0.45225	1	3787	3787		60.972	5.4677	1	282030			55352	8046	45713	45752	60417	60417					0.07886577919794036
SSPNQAPTRPP	11	Unmodified	_SSPNQAPTRPP_					0	0	0			REV__ENST00000479481.5_1_10:99116853-99131081:-|nuORF	REV__ENST00000479481.5_1_10:99116853-99131081:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	576.3541259765625	2	576.293819	1150.57309	-0.246	-0.00014177	-2.5964	-0.0014963	-2.8424	-0.001638	576.2913683278666	71.81	0.31216	69.303	69.068	69.381	-2.5071					8	5	2	0	0	0	0.025749	1	5781	5781		53.089	1.8963	1	11863	+		55353	26437	45714	45753	60418	60418					0.003821543525418747
SSPNQKKL	8	Unmodified	_SSPNQKKL_					0	0	0			REV__ENSG00000104369|ENST00000342232|JPH1	REV__ENSG00000104369|ENST00000342232|JPH1	MULTI-MSMS	OvCa9_classI_Rep4_	4	451.2591552734375	2	451.258717	900.50288	-0.23794	-0.00010737	0.094508	4.2648E-05	-0.14344	-6.4726E-05	451.2586444685427	54.2	1.2819	50.953	50.671	51.953	-3.2474					44	24	2	0	0	0	0.66992	1	3370	3370		49.442	1.7842	1	524640	+		55354	17662	45715	45754	60419	60419					0.048649007547169276
SSPSSLFPFFP	11	Unmodified	_SSPSSLFPFFP_					0	0	0		ENST00000361264.8_1_9:34126412-34126766:-|nuORF	ENST00000361264.8_1_9:34126412-34126766:-|nuORF	ENST00000361264.8_1_9:34126412-34126766:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	605.82568359375	2	606.800414	1211.58628	1.8213	0.0011052	-3.8904	-0.0023607	-2.0691	-0.0012555	606.7977554368974	91.295	0.40165	91.295	91.057	91.459	0					21	9	3	0	0	0	0.02538	1	9802	9802		45.972	6.7194	1	874980			55355	10790	45716	45755	60420	60420					-0.011054075881020253
SSPTTEKGKI	10	Unmodified	_SSPTTEKGKI_					0	0	0			REV__ENSG00000137440|ENST00000382333|FGFBP1	REV__ENSG00000137440|ENST00000382333|FGFBP1	MULTI-MSMS	OvCa9_classI_Rep2	2	524.2879638671875	2	524.287671	1046.56079	0.32988	0.00017295	0.61113	0.00032041	0.94101	0.00049336	524.2878628443616	44.341	1.6949	41.631	41.303	42.998	-2.7097					85	33	4	0	0	0	0.66721	1	2538	2538		34.173	1.3601	1	482610	+		55356	19451	45717	45756	60421	60421					0.03937117889495312
SSQLSLLLAP	10	Unmodified	_SSQLSLLLAP_					0	0	0			REV__ENST00000480561.5_1_3:48636882-48638270:-|nuORF	REV__ENST00000480561.5_1_3:48636882-48638270:-|nuORF	MSMS	OvCa99_classI_Rep5	1	514.8011474609375	2	514.802957	1027.59136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.643	1	33.643	33.143	34.143	0								0	0	0	0.15649	1	1561	1561		45.972	5.1941	1		+		55357	26464	45718	45757	60422	60422					0.07866896274549617
SSQQKMEGQLQ	11	Unmodified	_SSQQKMEGQLQ_					0	0	0		sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	632.3031005859375	2	632.303526	1262.5925	0.051259	3.2411E-05	-3.1217	-0.0019738	-3.0704	-0.0019414	632.3014928516415	83.364	0.92578	80.701	80.388	81.314	-2.6629					47	18	4	0	0	0	0.48812	1	6935	6935		54.722	7.065	1	334770			55358	32910	45719	45758	60423	60423					-0.02829257418875386
SSQQKMEGQLQ	11	Unmodified	_SSQQKMEGQLQ_					0	0	0		sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	632.303526	1262.5925	-0.33866	-0.00021414	-2.4611	-0.0015562	-2.7998	-0.0017703	632.3016899568393	82.583	0.93665	80.984	80.384	81.321	-1.5988	0.20672	0.00030052	NaN	54.722	43	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96815			55359	32910	45719	45758							-0.02829257418875386
SSQQKMEGQLQ	11	Unmodified	_SSQQKMEGQLQ_					0	0	0		sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	sp|Q6SW84|LTP_HCMVMLargetegumentproteindeneddylaseOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL48PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	632.303526	1262.5925	-0.61877	-0.00039125	-2.5328	-0.0016015	-3.1516	-0.0019927	632.3018542119568	82.943	1.111	80.647	80.332	81.443	-2.2963	-0.13039	0.00020985	NaN	54.722	61	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	387530			55360	32910	45719	45758							-0.02829257418875386
SSQTWDMFPL	10	Unmodified	_SSQTWDMFPL_					0	0	0		L1MB3_dup1513|chr1:246270299-246273131:-|1.1805691521590191|0.3959605958472513|1.58|429.0|192|3|anti-sense	L1MB3_dup1513|chr1:246270299-246273131:-|1.1805691521590191|0.3959605958472513|1.58|429.0|192|3|anti-sense	L1MB3_dup1513|chr1:246270299-246273131:-|1.1805691521590191|0.3959605958472513|1.58|429.0|192|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	606.2730102539062	2	606.273706	1210.53286	-0.5296	-0.00032108	0.15363	9.3139E-05	-0.37597	-0.00022794	606.2736051065918	40.232	0.98823	37.523	37.302	38.29	-2.7097					42	19	3	0	0	0	0.72142	1	2023	2023		6.3127	0	1	131260			55361	14596	45720	45759	60424	60424					-0.06398528362251454
SSQVAIRGI	9	Unmodified	_SSQVAIRGI_					0	0	0		ENSG00000081479|ENST00000649046|LRP2;LRP2|p.I2300Sfs*31|1|0.04|ENSG00000081479|chr2:169206821-169206822|-/C|frameshift_variant	ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	466.2458190917969	2	465.771991	929.529429	-0.7996	-0.00037243	-3.8569	-0.0017965	-4.6565	-0.0021689	465.77110436106574	26.817	0.24997	26.817	26.692	26.942	0					6	4	2	0	0	0	0.027462	1	737	737		16.473	8.7829	1	11812			55362	1662	45721	45760	60425	60425					0.06184589646045424
SSRARPRRRP	10	Unmodified	_SSRARPRRRP_					0	0	0			REV__ENST00000481801.5_1_2:134877617-135011878:+|nuORF	REV__ENST00000481801.5_1_2:134877617-135011878:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8681640625	2	619.868686	1237.72282	-3.1788	-0.0019704	4.4461	0.002756	1.2673	0.00078558	619.8711859647292	147.21	3.9856	146.98	144.83	148.82	-0.22696					207	79	4	0	0	0	0.79917	1	14837	14837		19.104	0	1	163200	+		55363	26234	45722	45761	60426	60426					0.11346564205632603
SSREEKESKK	10	Unmodified	_SSREEKESKK_					0	0	0		nc|ENSG00000029363|Q9NYF8-4|BCLAF1;nc|ENSG00000029363|Q9NYF8-3|BCLAF1;nc|ENSG00000029363|Q9NYF8-2|BCLAF1;ENSG00000029363|ENST00000531224|BCLAF1;ENST00000505813.1_1_5:110284092-110284650:-|nuORF	nc|ENSG00000029363|Q9NYF8-4|BCLAF1	nc|ENSG00000029363|Q9NYF8-4|BCLAF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.7050476074219	3	403.214086	1206.62043	1.0976	0.00044257	1.1838	0.00047734	2.2814	0.00091991	403.21424368187724	58.803	0.19651	58.803	58.655	58.852	0					6	4	2	0	0	0	0.027089	1	5024	5024		19.263	0	1	58143			55364	1062	45723	45762	60427	60427					0.0253838883284061
SSRLGRAAPV	10	Unmodified	_SSRLGRAAPV_					0	0	0		nc|ENSG00000102054|Q16576-2|RBBP7	nc|ENSG00000102054|Q16576-2|RBBP7	nc|ENSG00000102054|Q16576-2|RBBP7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.29437255859375	2	507.296165	1012.57778	0.38144	0.0001935	-0.53578	-0.0002718	-0.15434	-7.8296E-05	507.29569261971153	37.665	1.2424	34.773	34.492	35.734	-2.8925					46	24	3	0	0	0	0.026688	1	1492	1492		40.778	0	1	96635			55365	14931	45724	45763	60428	60428					0.07199083285945562
SSRRWALQAT	10	Unmodified	_SSRRWALQAT_					0	0	0		nc|ENSG00000131697|O75161-2|NPHP4	nc|ENSG00000131697|O75161-2|NPHP4	nc|ENSG00000131697|O75161-2|NPHP4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	587.3406982421875	2	588.317628	1174.6207	0.19273	0.00011339	-1.3945	-0.00082042	-1.2018	-0.00070703	588.3167629702795	38.207	0.69289	35.28	35.106	35.799	-2.9264					19	13	2	0	0	0	0.026659	1	1517	1517		54.776	25.627	1	35077			55366	15014	45725	45764	60429	60429					0.04037853343356801
SSRSLLSLASL	11	Unmodified	_SSRSLLSLASL_					0	0	0			REV__ENST00000464112.5_1_6:35436546-35438524:+|nuORF	REV__ENST00000464112.5_1_6:35436546-35438524:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3290405273438	2	567.32987	1132.64519	-3.474	-0.0019709	3.3269	0.0018874	-0.14716	-8.3486E-05	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.68021	1	12198	12198		36.447	2.2742	1	458690	+		55367	26141	45726	45765	60430	60430					0.08417068706239661
SSSAGPGLLK	10	Unmodified	_SSSAGPGLLK_					0	0	0		ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENST00000552322.5_1_12:52638288-52642544:+|nuORF;ENST00000550153.1_1_12:52641566-52642541:+|nuORF;ENST00000549638.1_1_12:52641943-52642541:+|nuORF;DTX4-KRT7|1|fusion	ENSG00000135480|ENST00000331817|KRT7;DTX4-KRT7|1|fusion	ENSG00000135480|ENST00000331817|KRT7	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.759765625	2	458.758549	915.502546	-0.018242	-8.3685E-06	-0.13539	-6.2111E-05	-0.15363	-7.048E-05	458.7583917368632	59.321	1.5834	55.929	55.451	57.035	-3.392					70	31	4	0	0	0	0.1722	1	3955	3955		98.629	5.4339	1	1509100		+	55368	646;764	45727	45766	60431	60431					0.041414810348555875
SSSAGPGLLK	10	Unmodified	_SSSAGPGLLK_					0	0	0		ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;ENST00000552322.5_1_12:52638288-52642544:+|nuORF;ENST00000550153.1_1_12:52641566-52642541:+|nuORF;ENST00000549638.1_1_12:52641943-52642541:+|nuORF;DTX4-KRT7|1|fusion	ENSG00000135480|ENST00000331817|KRT7;DTX4-KRT7|1|fusion	ENSG00000135480|ENST00000331817|KRT7	MULTI-MATCH	OvCa9_classI_Rep2	2		2	458.758549	915.502546	0.17171	7.8773E-05	-0.083064	-3.8106E-05	0.088645	4.0666E-05	458.7583218891327	58.943	1.7489	56.163	55.689	57.438	-2.7801	0.11712	2.5846E-05	NaN	98.629	68	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271710		+	55369	646;764	45727	45766							0.041414810348555875
SSSGGGGG	8	Unmodified	_SSSGGGGG_					0	0	0		ENSG00000171444|ENST00000408903|MCC;MCC|p.R754Lfs*11|1|0.06|ENSG00000171444|chr5:113028982-113028983|-/A|frameshift_variant;ENST00000545606.5_1_12:67663381-67663543:+|nuORF;ENST00000487509.6_1_16:31191511-31196501:+|nuORF;ENST00000511242.1_1_5:112783941-112824318:-|nuORF;ENSG00000163623|ENST00000295886|NKX6-1;ENST00000405737.2_2_13:41556342-41635296:-|nuORF;PRRC2A|p.G1884Rfs*57|1|0.07|ENSG00000204469|chr6:31636227-31636228|-/C|frameshift_variant;nc|ENSG00000204469|P48634-2|PRRC2A;nc|ENSG00000204469|P48634-3|PRRC2A;ENSG00000204469|ENST00000376033|PRRC2A;ENSG00000089280|ENST00000254108|FUS;nc|ENSG00000089280|P35637-2|FUS;ENSG00000120738|ENST00000239938|EGR1;ENSG00000155265|ENST00000370602|GOLGA7B	REV__ENSG00000196498|ENST00000405201|NCOR2;ENSG00000163623|ENST00000295886|NKX6-1;ENST00000405737.2_2_13:41556342-41635296:-|nuORF;REV__ENSG00000133858|ENST00000378743|ZFC3H1;PRRC2A|p.G1884Rfs*57|1|0.07|ENSG00000204469|chr6:31636227-31636228|-/C|frameshift_variant;REV__ENSG00000130449|ENST00000252744|ZSWIM6;ENSG00000089280|ENST00000254108|FUS;ENSG00000120738|ENST00000239938|EGR1;ENSG00000155265|ENST00000370602|GOLGA7B;REV__ENSG00000180828|ENST00000321870|BHLHE22	REV__ENSG00000196498|ENST00000405201|NCOR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.2716674804688	1	565.221245	564.213969	2.3736	0.0013416	-0.98716	-0.00055796	1.3865	0.00078367	565.2183608604951	100.19	0.17206	100.19	100.07	100.24	0					5	3	2	0	0	0	0.028476	1	11105	11105		13.775	0.81615	1	47674			55370	22837;19161;18946;8988;6335;11470;1819;3449;5775;22199	45728	45767	60432	60432					-0.0855698915256653
SSSLATHQTV	10	Unmodified	_SSSLATHQTV_					0	0	0		nc|ENSG00000197608|Q6ZN19-2|ZNF841;nc|ENSG00000197608|Q6ZN19|ZNF841;ENSG00000197608|ENST00000594440|ZNF841	nc|ENSG00000197608|Q6ZN19-2|ZNF841	nc|ENSG00000197608|Q6ZN19-2|ZNF841	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.793212890625	2	515.76182	1029.50909	-0.77578	-0.00040012	-2.0233	-0.0010435	-2.7991	-0.0014436	515.7609101379085	121.02	0.64149	120.82	120.56	121.2	-0.19718					14	12	2	0	0	0	0.026826	1	11688	11688		36.447	0	1	8838.8			55371	8728	45729	45768	60433	60433					-0.00448625804438052
SSSLETFFDSL	11	Unmodified	_SSSLETFFDSL_					0	0	0		ENST00000491838.5_1_21:42598231-42618026:+|nuORF;ENST00000463674.5_1_21:42613685-42647548:+|nuORF;nc|ENSG00000182240|Q9Y5Z0-3|BACE2;nc|ENSG00000182240|Q9Y5Z0-5|BACE2;nc|ENSG00000182240|Q9Y5Z0-4|BACE2;nc|ENSG00000182240|Q9Y5Z0-2|BACE2;ENSG00000182240|ENST00000330333|BACE2;BACE2-FAM3B|1|fusion;BACE2-FAM3B|3|fusion;BACE2-FAM3B|2|fusion;BACE2-FAM3B|4|fusion	ENST00000491838.5_1_21:42598231-42618026:+|nuORF	ENST00000491838.5_1_21:42598231-42618026:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.2233581542969	3	411.527559	1231.56085	0.45003	0.0001852	3.5482	0.0014602	3.9982	0.0016454	411.52896169371536	35.638	4.0304	35.638	35.475	39.505	0					176	88	2	0	0	0	0.025638	1	2222	2222		11.455	0	1	804370			55372	140	45730	45769	60434	60434					-0.04566926901179613
SSSLQFWQDL	10	Unmodified	_SSSLQFWQDL_					0	0	0			REV__ENSG00000139641|ENST00000394048|ESYT1	REV__ENSG00000139641|ENST00000394048|ESYT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	403.2315979003906	3	404.196144	1209.5666	0.57592	0.00023278	-1.8092	-0.00073125	-1.2332	-0.00049847	404.19568725412444	34.995	0.5674	34.995	34.772	35.339	0					14	11	2	0	0	0	0.026968	1	1759	1759		16.53	0	1	16438	+		55373	19626	45731	45770	60435	60435					-0.029797835988347288
SSSPKKVT	8	Unmodified	_SSSPKKVT_					0	0	0			REV__ENST00000492094.6_2_6:9673326-9673401:-|nuORF	REV__ENST00000492094.6_2_6:9673326-9673401:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	417.2403259277344	2	417.239993	832.465432	-0.040982	-1.7099E-05	4.1542	0.0017333	4.1132	0.0017162	417.24046656725744	37.962	1.0036	37.962	37.344	38.348	0					47	21	4	0	0	0	0.70469	1	2119	2119		42.396	0	1	632060	+		55374	26688	45732	45771	60436	60436					0.04249809489101608
SSSQSYLSHSQ	11	Unmodified	_SSSQSYLSHSQ_					0	0	0		nc|ENSG00000119596|P49750-3|YLPM1;nc|ENSG00000119596|P49750-1|YLPM1;ENSG00000119596|ENST00000325680|YLPM1;YLPM1|p.P1538Hfs*3|1|0.17|ENSG00000119596|chr14:74809470-74809471|-/AT|frameshift_variant;YLPM1|p.L1083*|1|0.45|ENSG00000119596|chr14:74798542-74798545|GGTT/-|frameshift_variant;YLPM1|p.R1111Qfs*21|1|0.07|ENSG00000119596|chr14:74798627-74798628|-/C|frameshift_variant	nc|ENSG00000119596|P49750-3|YLPM1	nc|ENSG00000119596|P49750-3|YLPM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.21759033203125	3	404.182675	1209.52619	1.3236	0.00053499	3.1629	0.0012784	4.4865	0.0018134	404.184128995986	46.724	0.17804	46.724	46.631	46.809	0					5	3	2	0	0	0	0.025418	1	3311	3311		18.332	4.8237	1	30341			55375	3372	45733	45772	60437	60437					-0.07018749989288153
SSSRLSILSQ	10	Unmodified	_SSSRLSILSQ_					0	0	0		IL1R2|p.I367Nfs*35|1|0.08|ENSG00000115590|chr2:102028286-102028287|-/G|frameshift_variant	IL1R2|p.I367Nfs*35|1|0.08|ENSG00000115590|chr2:102028286-102028287|-/G|frameshift_variant	IL1R2|p.I367Nfs*35|1|0.08|ENSG00000115590|chr2:102028286-102028287|-/G|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.794921875	2	539.29857	1076.58259	1.7719	0.00095557	1.3766	0.00074238	3.1484	0.001698	539.2997690619674	83.823	0.58928	83.823	83.419	84.009	0					23	13	2	0	0	0	0.026826	1	8688	8688		36.447	0	1	1484300			55376	14503	45734	45773	60438	60438					0.047359226380422115
SSSSKELLV	9	Unmodified	_SSSSKELLV_					0	0	0		ENSG00000166685|ENST00000299886|COG1	ENSG00000166685|ENST00000299886|COG1	ENSG00000166685|ENST00000299886|COG1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.3005065917969	2	475.263665	948.512776	0.6016	0.00028592	-0.98929	-0.00047017	-0.38769	-0.00018426	475.26324651790446	66.813	1.0379	63.322	63.049	64.087	-3.4902					39	20	3	0	0	0	0.027441	1	4870	4870		58.782	14.665	1	416830			55377	6701	45735	45774	60439	60439					0.03646043969445145
SSSSRFLEV	9	Unmodified	_SSSSRFLEV_					0	0	0		ENSG00000157837|ENST00000353487|SPPL3;nc|ENSG00000157837|Q8TCT6-3|SPPL3;ENST00000545209.1_1_12:121202804-121206399:-|nuORF;ENST00000392495.7_1_12:121202804-121206971:-|nuORF	ENSG00000157837|ENST00000353487|SPPL3	ENSG00000157837|ENST00000353487|SPPL3	MULTI-MSMS	OvCa9_classI_Rep2	2	506.2585754394531	2	506.258914	1010.50327	-0.0082329	-4.168E-06	-0.72144	-0.00036523	-0.72967	-0.0003694	506.2584999623091	80.238	2.521	78.542	77.819	80.34	-1.6951					182	49	6	0	0	0	0.1804	7	6748	6727;6731;6742;6748;6753;6771;6778		79.713	18.322	1	1626600			55378	5915	45736	45775	60440;60441;60442;60443;60444;60445;60446	60443					-0.0015572431608461557
SSSSRFLEV	9	Unmodified	_SSSSRFLEV_					0	0	0		ENSG00000157837|ENST00000353487|SPPL3;nc|ENSG00000157837|Q8TCT6-3|SPPL3;ENST00000545209.1_1_12:121202804-121206399:-|nuORF;ENST00000392495.7_1_12:121202804-121206971:-|nuORF	ENSG00000157837|ENST00000353487|SPPL3	ENSG00000157837|ENST00000353487|SPPL3	MULTI-MSMS	OvCa9_classI_Rep3	3	506.2596435546875	2	506.258914	1010.50327	-0.50726	-0.0002568	0.36554	0.00018506	-0.14172	-7.1748E-05	506.2592188272637	80.284	3.2748	77.944	77.563	80.838	-2.3399					161	64	6	0	0	0	0.14855	4	4385	4385;4404;4410;4416		85.161	18.322	1	3690200			55379	5915	45736	45775	60447;60448;60449;60450	60447					-0.0015572431608461557
SSSSRFLEV	9	Unmodified	_SSSSRFLEV_					0	0	0		ENSG00000157837|ENST00000353487|SPPL3;nc|ENSG00000157837|Q8TCT6-3|SPPL3;ENST00000545209.1_1_12:121202804-121206399:-|nuORF;ENST00000392495.7_1_12:121202804-121206971:-|nuORF	ENSG00000157837|ENST00000353487|SPPL3	ENSG00000157837|ENST00000353487|SPPL3	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.2593688964844	2	506.258914	1010.50327	-1.11	-0.00056195	0.36502	0.0001848	-0.74497	-0.00037715	506.2590571991676	81.025	1.8956	78.314	77.81	79.706	-2.7106					142	38	6	0	0	0	0.2077	3	6643	6631;6643;6668		75.043	20.279	1	3738200			55380	5915	45736	45775	60451;60452;60453	60452					-0.0015572431608461557
SSSTNNPL	8	Unmodified	_SSSTNNPL_					0	0	0			REV__nc|ENSG00000141510|P04637-8|TP53	REV__nc|ENSG00000141510|P04637-8|TP53	MULTI-SECPEP	OvCa99_classI_Rep5	1	409.5863342285156	2	410.195782	818.377011	0.84403	0.00034622	-0.38698	-0.00015874	0.45705	0.00018748	410.1954921412904	35.495	0.87108	35.495	35.293	36.164	0					40	18	4	0	0	0	0.028476	1	1770	1770		26.796	0	1	834180	+		55381	15952	45737	45776	60454	60454					-0.03944230821389283
SSSVNFAKG	9	Unmodified	_SSSVNFAKG_					0	0	0			REV__ENST00000600766.1_3_19:23032061-23041232:+|nuORF	REV__ENST00000600766.1_3_19:23032061-23041232:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	448.7873229980469	2	448.727249	895.439946	2.0538	0.00092158	-1.992	-0.00089385	0.061813	2.7737E-05	448.72622307391106	46.927	0.69367	44.217	43.993	44.687	-2.7097					17	13	2	0	0	0	0.027462	1	2857	2857		18.262	0	1	22589	+		55382	23597	45738	45777	60455	60455					-0.011956650333331709
SSTKKEKI	8	Unmodified	_SSTKKEKI_					0	0	0			REV__ENST00000442406.5_1_3:184038690-184052693:+|nuORF	REV__ENST00000442406.5_1_3:184038690-184052693:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	460.773681640625	2	460.7742	919.533846	-0.69069	-0.00031825	0.59166	0.00027262	-0.099031	-4.5631E-05	460.7743243827613	39.948	0.95426	39.948	39.756	40.711	0					38	20	3	0	0	0	0.55617	1	2388	2388		71.877	0.58177	1	2434000	+		55383	18208	45739	45778	60456	60456					0.07086054068940939
SSTLLELGGQ	10	Unmodified	_SSTLLELGGQ_					0	0	0			REV__ENST00000430404.6_1_7:96608588-96641184:-|nuORF	REV__ENST00000430404.6_1_7:96608588-96641184:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.7999267578125	2	502.766571	1003.51859	0.10721	5.3903E-05	0.23056	0.00011592	0.33778	0.00016982	503.26784823747437	103.47	0.20879	103.47	103.3	103.51	0					6	4	2	0	0	0	0.026785	1	11568	11568		67.494	0	1	77879	+		55384	25714	45740	45779	60457	60457					0.016971424811004
SSTRVWPLSTL	11	Unmodified	_SSTRVWPLSTL_					0	0	0			REV__L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|357|3|anti-sense	REV__L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|357|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	416.24493408203125	3	416.231189	1245.67174	1.1307	0.00047064	-3.6469	-0.001518	-2.5162	-0.0010473	416.2295231596108	72.266	0.82872	72.266	72.086	72.915	0					26	20	2	0	0	0	0.025716	1	7049	7049		79.07	17.379	1	849560	+		55385	28513	45741	45780	60458	60458					0.0587275759755812
SSTSHVPEV	9	Unmodified	_SSTSHVPEV_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.73114013671875	2	471.729989	941.445425	-0.21854	-0.00010309	0.082196	3.8774E-05	-0.13634	-6.4318E-05	471.7299983342387	55.171	1.8798	51.923	51.439	53.319	-3.2474					84	36	3	0	0	0	0.074342	3	3463	3451;3463;3476		104.75	25.4	1	1468500			55386	7034	45742	45781	60459;60460;60461	60460					-0.027639862415185235
SSTSHVPEV	9	Unmodified	_SSTSHVPEV_					0	0	0		ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	ENSG00000169710|ENST00000306749|FASN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	471.729989	941.445425	-1.134	-0.00053495	1.2001	0.00056614	0.066125	3.1193E-05	471.73042085537924	54.948	1.2949	52.134	51.722	53.017	-2.8139	0.10541	0.00088203	NaN	104.75	60	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228810			55387	7034	45742	45781							-0.027639862415185235
SSVDQPLKI	9	Unmodified	_SSVDQPLKI_					0	0	0		ENSG00000077549|ENST00000264202|CAPZB;nc|ENSG00000077549|P47756-1|CAPZB;ENST00000482808.1_1_1:19700942-19811932:-|nuORF	ENSG00000077549|ENST00000264202|CAPZB	ENSG00000077549|ENST00000264202|CAPZB	MULTI-MSMS	OvCa99_classI_Rep5	1	493.78106689453125	2	493.779482	985.544411	1.9396	0.00095775	0.022485	1.1103E-05	1.9621	0.00096886	493.7794422865546	78.275	1.3838	78.275	77.968	79.352	0					106	33	5	0	0	0	0.014622	2	7936	7907;7936		154.12	20.899	1	29349000			55388	1576	45743	45782	60462;60463	60463					0.05106036723384477
SSVGLGLLLL	10	Unmodified	_SSVGLGLLLL_					0	0	0			REV__nc|ENSG00000172663|Q9H6X4-2|TMEM134	REV__nc|ENSG00000172663|Q9H6X4-2|TMEM134	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.3099365234375	2	486.310418	970.606283	-0.36957	-0.00017972	0.29623	0.00014406	-0.073335	-3.5663E-05	486.3104765659595	123.79	1.1064	122.4	122.13	123.23	-1.3908					51	21	3	0	0	0	0.56767	1	11724	11724		45.952	0	1	188920	+		55389	29008	45744	45783	60464	60464					0.11980388142535503
SSVKKALEF	9	Unmodified	_SSVKKALEF_					0	0	0			REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	REV__nc|ENSG00000168026|Q8NDW8-6|TTC21A	MULTI-MSMS	OvCa9_classI_Rep2	2	504.78948974609375	2	504.78985	1007.56515	-1.5143	-0.00076442	1.2074	0.0006095	-0.30689	-0.00015492	504.79037457999766	54.562	1.2968	51.748	51.375	52.671	-2.8139					67	25	4	0	0	0	0.37135	1	3775	3775		54.776	2.4771	1	416460	+		55390	21336	45745	45784	60465	60465					0.06166627103038991
SSVKPGTFPK	10	Unmodified	_SSVKPGTFPK_					0	0	0		nc|ENSG00000156650|Q8WYB5-3|KAT6B;KAT6B|p.F1803Rfs*22|1|0.06|ENSG00000156650|chr10:75030230-75030231|-/CG|frameshift_variant;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B;KAT6B|p.F191Pfs*13|1|0.04|ENSG00000156650|chr10:74843428-74843429|TT/-|frameshift_variant;KAT6B|p.F191Lfs*65|1|0.04|ENSG00000156650|chr10:74843429-74843430|-/AAAAGCAAAAGCAAAGG|frameshift_variant;KAT6B-ADK|1|fusion	nc|ENSG00000156650|Q8WYB5-3|KAT6B	nc|ENSG00000156650|Q8WYB5-3|KAT6B	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.2924194335938	2	524.295299	1046.57605	-0.66829	-0.00035038	-1.0955	-0.00057438	-1.7638	-0.00092476	524.2946332477701	21.344	1.0773	20.005	19.548	20.625	-1.3386					56	21	3	0	0	0	0.71173	1	142	142		29.17	0.020503	1	93379			55391	5851	45746	45785	60466	60466					0.05462029477325814
SSVLVLLNPIP	11	Unmodified	_SSVLVLLNPIP_					0	0	0		ENST00000339420.6_1_3:44958011-44958284:-|nuORF	ENST00000339420.6_1_3:44958011-44958284:-|nuORF	ENST00000339420.6_1_3:44958011-44958284:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	576.3541259765625	2	576.355357	1150.69616	-0.29031	-0.00016732	-2.8965	-0.0016694	-3.1868	-0.0018367	576.3537371528553	71.759	4.075	69.252	68.91	72.985	-2.5071					188	77	5	0	0	0	0.5466	1	5776	5776		49.536	3.0793	1	5146300			55392	10550	45747	45786	60467	60467					0.12684017751098509
SSVLVLLNPIP	11	Unmodified	_SSVLVLLNPIP_					0	0	0		ENST00000339420.6_1_3:44958011-44958284:-|nuORF	ENST00000339420.6_1_3:44958011-44958284:-|nuORF	ENST00000339420.6_1_3:44958011-44958284:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	576.3546142578125	2	576.355357	1150.69616	-0.5103	-0.00029411	-2.8265	-0.0016291	-3.3368	-0.0019232	576.3538085628105	72.001	4.4609	69.399	69.081	73.542	-2.6023					248	89	5	0	0	0	0.25285	1	3413	3413		72.879	5.3856	1	7516400			55393	10550	45747	45786	60468	60468					0.12684017751098509
SSVPGVRLL	9	Unmodified	_SSVPGVRLL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa99_classI_Rep5	1	464.28564453125	2	464.284734	926.554916	1.7481	0.00081162	0.26283	0.00012203	2.0109	0.00093365	464.28473395370236	93.697	1.4373	93.697	93.468	94.905	0					69	33	4	0	0	0	0.2422	1	10186	10186		69.628	7.5202	1	12732000			55394	1049	45748	45787	60469	60469					0.0887006416847953
SSVPGVRLL	9	Unmodified	_SSVPGVRLL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa9_classI_Rep2	2	464.283203125	2	464.284734	926.554916	-0.47758	-0.00022173	-0.04427	-2.0554E-05	-0.52185	-0.00024229	464.2847749072464	94.677	2.282	93.578	92.958	95.24	-1.0995					133	45	5	0	0	0	0.03923	13	8475	8469;8475;8481;8487;8493;8499;8505;8511;8517;8523;8529;8535;8557		127.46	53.389	1	4671500			55395	1049	45748	45787	60470;60471;60472;60473;60474;60475;60476;60477;60478;60479;60480;60481;60482	60471					0.0887006416847953
SSVPGVRLL	9	Unmodified	_SSVPGVRLL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa9_classI_Rep3	3	464.2856750488281	2	464.284734	926.554916	-0.78612	-0.00036498	0.10523	4.8857E-05	-0.68089	-0.00031613	464.2847975981264	95.44	2.3134	93.544	92.964	95.278	-1.8956					168	45	5	0	0	0	0.014964	15	6220	6209;6214;6220;6226;6232;6238;6244;6250;6256;6262;6268;6274;6281;6288;6296		153.04	53.389	1	5965000			55396	1049	45748	45787	60483;60484;60485;60486;60487;60488;60489;60490;60491;60492;60493;60494;60495;60496;60497	60485					0.0887006416847953
SSVPGVRLL	9	Unmodified	_SSVPGVRLL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000485947.1_1_10:17271421-17272784:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa9_classI_Rep4_	4	464.2854919433594	2	464.284734	926.554916	-0.49651	-0.00023052	-0.28359	-0.00013167	-0.7801	-0.00036219	464.2846418927857	96.06	2.7712	93.634	93.254	96.025	-2.4256					145	54	5	0	0	0	0.019133	8	8462	8450;8462;8474;8486;8498;8510;8522;8537		148.04	51.287	1	5572100			55397	1049	45748	45787	60498;60499;60500;60501;60502;60503;60504;60505	60499					0.0887006416847953
SSVRNSKKI	9	Unmodified	_SSVRNSKKI_					0	0	0			REV__ENSG00000107554|ENST00000324109|DNMBP	REV__ENSG00000107554|ENST00000324109|DNMBP	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8034362792969	2	509.803823	1017.59309	-0.41042	-0.00020923	0.30853	0.00015729	-0.10189	-5.1945E-05	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.70685	1	13676	13676		15.642	0.0055962	1	150140	+		55398	16323	45749	45788	60506	60506					0.08499950083125896
SSVSLVSVSF	10	Unmodified	_SSVSLVSVSF_					0	0	0			REV__ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	REV__ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	506.2734375	2	506.27149	1010.52843	1.7132	0.00086734	2.8503	0.001443	4.5635	0.0023104	506.2727467608177	54.771	2.6321	51.6	50.779	53.411	-3.1715					173	88	3	0	0	0	0.52321	2	1436	1436;1471		51.335	8.9393	1	154000	+		55399	15573	45750	45789	60507;60508	60507					0.023583304864814636
SSVSPPQII	9	Unmodified	_SSVSPPQII_					0	0	0		nc|ENSG00000170954|Q09FC8-4|ZNF415;nc|ENSG00000170954|Q09FC8-6|ZNF415;ENSG00000170954|ENST00000243643|ZNF415;nc|ENSG00000170954|Q09FC8-2|ZNF415;nc|ENSG00000170954|Q09FC8|ZNF415	nc|ENSG00000170954|Q09FC8-4|ZNF415	nc|ENSG00000170954|Q09FC8-4|ZNF415	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.28460693359375	2	464.260925	926.507297	-0.19208	-8.9174E-05	0.62645	0.00029083	0.43437	0.00020166	464.2611023551557	95.717	1.4383	94.689	93.873	95.311	-1.0281					50	28	2	0	0	0	0.027426	1	8542	8542		39.253	12.457	1	51227			55400	15178	45751	45790	60509	60509					0.04110365177609765
SSWIKEPI	8	Unmodified	_SSWIKEPI_					0	0	0			REV__ENSG00000166685|ENST00000299886|COG1	REV__ENSG00000166685|ENST00000299886|COG1	MULTI-MSMS	OvCa99_classI_Rep5	1	480.2615661621094	2	480.263468	958.512382	-0.70807	-0.00034006	-3.5753	-0.0017171	-4.2833	-0.0020571	480.2616845345002	42.046	0.68739	42.046	41.809	42.496	0					25	15	2	0	0	0	0.65062	1	2671	2671		53.351	2.016	1	947460	+		55401	21213	45752	45791	60510	60510					0.031466690402339736
SSWRLYVSN	9	Unmodified	_SSWRLYVSN_					0	0	0			REV__nc|ENSG00000121904|Q7Z408|CSMD2	REV__nc|ENSG00000121904|Q7Z408|CSMD2	MULTI-SECPEP	OvCa9_classI_Rep3	3	555.3253173828125	2	556.28018	1110.54581	-1.5057	-0.00083759	1.1649	0.00064799	-0.34084	-0.0001896	556.2808118986524	85.448	1.3483	83.228	82.888	84.237	-2.2204					53	26	3	0	0	0	0.027462	1	5000	5000		13.454	0	1	288430	+		55402	18565	45753	45792	60511	60511					-0.005043291878337186
SSYGHEEG	8	Unmodified	_SSYGHEEG_					0	0	0			REV__ENSG00000143520|ENST00000388718|FLG2	REV__ENSG00000143520|ENST00000388718|FLG2	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1716613769531	2	433.169764	864.324976	2.6506	0.0011482	1.0551	0.00045706	3.7058	0.0016052	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.66704	1	1488	1488		50.025	19.521	1	60065	+	+	55403	16215	45754	45793	60512	60512					-0.11261394235134503
SSYGNIRAV	9	Unmodified	_SSYGNIRAV_					0	0	0		ENST00000577161.5_1_17:78519375-78883449:+|nuORF;nc|ENSG00000141564|Q8N122-3|RPTOR;ENSG00000141564|ENST00000306801|RPTOR	ENST00000577161.5_1_17:78519375-78883449:+|nuORF	ENST00000577161.5_1_17:78519375-78883449:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	483.7549133300781	2	483.753798	965.493044	-0.034426	-1.6654E-05	-0.099932	-4.8342E-05	-0.13436	-6.4996E-05	483.75365021910386	60.963	1.0132	60.963	60.73	61.743	0					42	23	4	0	0	0	0.035142	1	5346	5346		131.03	56.776	1	1754200			55404	4928	45755	45794	60513	60513					0.008917127493418775
SSYIMKLL	8	Unmodified	_SSYIMKLL_					0	0	0			REV__tr|A0A7D6ZG19|A0A7D6ZG19_9CLOTRestrictionendonucleaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20425PE=4SV=1	REV__tr|A0A7D6ZG19|A0A7D6ZG19_9CLOTRestrictionendonucleaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20425PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.24188232421875	2	477.770071	953.52559	0.76489	0.00036544	2.8892	0.0013804	3.6541	0.0017458	477.7713484908848	66.892	0.39544	66.892	66.619	67.014	0					15	9	2	0	0	0	0.028476	1	6208	6208		31.955	12.595	1	649190	+		55405	31989	45756	45795	60514	60514					0.046967838279670104
SSYIMKLL	8	Unmodified	_SSYIMKLL_					0	0	0			REV__tr|A0A7D6ZG19|A0A7D6ZG19_9CLOTRestrictionendonucleaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20425PE=4SV=1	REV__tr|A0A7D6ZG19|A0A7D6ZG19_9CLOTRestrictionendonucleaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20425PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	477.770071	953.52559	-0.4697	-0.00022441	7.0021	0.0033454	6.5324	0.003121	477.77191048552305	70.417	0.63376	66.935	66.688	67.322	-3.4812	0.021767	0.0033597	NaN	40.573	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30191	+		55406	31989	45756	45795							0.046967838279670104
SSYLIKAKQI	10	Unmodified	_SSYLIKAKQI_					0	0	0			REV__ENSG00000102174|ENST00000379374|PHEX	REV__ENSG00000102174|ENST00000379374|PHEX	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8434448242188	2	575.845156	1149.67576	-2.1491	-0.0012375	-1.4619	-0.00084184	-3.611	-0.0020794	575.8441928035448	141.47	4.0925	141.24	139.21	143.3	-0.22696					166	82	3	0	0	0	0.79917	1	14213	14213		19.104	0.77911	1	100260	+		55407	17540	45757	45796	60515	60515					0.10690847091291289
SSYRETPSSS	10	Unmodified	_SSYRETPSSS_					0	0	0		nc|ENSG00000095637|Q9BX66-11|SORBS1;ENSG00000095637|ENST00000371247|SORBS1;nc|ENSG00000095637|Q9BX66-2|SORBS1;nc|ENSG00000095637|Q9BX66-7|SORBS1;nc|ENSG00000095637|Q9BX66-4|SORBS1;nc|ENSG00000095637|Q9BX66-9|SORBS1;nc|ENSG00000095637|Q9BX66-8|SORBS1;nc|ENSG00000095637|Q9BX66-10|SORBS1;nc|ENSG00000095637|Q9BX66-6|SORBS1;SORBS1|p.L812Kfs*54|1|0.07|ENSG00000095637|chr10:95341675-95341676|-/AATTCTTTTTT|frameshift_variant;ENST00000474353.6_1_10:97106208-97250794:-|nuORF;nc|ENSG00000095637|Q9BX66-3|SORBS1;nc|ENSG00000095637|Q9BX66-5|SORBS1;nc|ENSG00000095637|Q9BX66-12|SORBS1;SORBS1|p.Q289Vfs*15|1|0.05|ENSG00000095637|chr10:95410727-95410728|-/AACTGTGAAGTCAGAGAGCACAGAG|frameshift_variant	nc|ENSG00000095637|Q9BX66-11|SORBS1	nc|ENSG00000095637|Q9BX66-11|SORBS1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.7828979492188	2	550.746367	1099.47818	-1.1554	-0.00063632	-3.8754	-0.0021344	-5.0308	-0.0027707	550.7442085476467	43.184	0.4725	40.176	39.958	40.431	-3.0074					11	8	2	0	0	0	0.026968	1	2042	2042		29.17	0	1	12713			55408	1936	45758	45797	60516	60516					-0.06757823909333638
STAKELNMPF	10	Unmodified	_STAKELNMPF_					0	0	0		ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MULTI-MSMS	OvCa9_classI_Rep4_	4	569.2819213867188	2	569.284074	1136.5536	3.5918	0.0020448	-3.1989	-0.0018211	0.39293	0.00022369	569.2820671370904	134.05	1.1369	132.52	132.19	133.33	-1.5257					54	22	3	0	0	0	0.58067	1	12987	12987		44.377	9.1765	1	90201			55409	4421	45759	45798	60517	60517					-0.009219379826163276
STAKELNMPF	10	Unmodified	_STAKELNMPF_					0	0	0		ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MULTI-MATCH	OvCa9_classI_Rep2	2		2	569.284074	1136.5536	-0.088915	-5.0618E-05	0.60299	0.00034327	0.51408	0.00029266	569.2842727713709	132.65	1.0354	132.42	132.18	133.21	-0.22696	-0.099602	0.0014	NaN	44.377	46	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76850			55410	4421	45759	45798							-0.009219379826163276
STAKELNMPF	10	Unmodified	_STAKELNMPF_					0	0	0		ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	ENSG00000135837|ENST00000367607|CEP350	MULTI-MATCH	OvCa9_classI_Rep3	3		2	569.284074	1136.5536	-0.70468	-0.00040116	1.2312	0.00070092	0.52655	0.00029976	569.2845826717086	133.74	0.98671	132.62	132.32	133.31	-1.1226	0.098968	0.0021153	NaN	44.377	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61051			55411	4421	45759	45798							-0.009219379826163276
STAYIIIND	9	Unmodified	_STAYIIIND_					0	0	0			REV__tr|A0A7D6VVP1|A0A7D6VVP1_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04180PE=4SV=1	REV__tr|A0A7D6VVP1|A0A7D6VVP1_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04180PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	504.29608154296875	2	505.263665	1008.51278	-0.55587	-0.00028086	-3.8331	-0.0019367	-4.3889	-0.0022176	505.2616620684213	105.39	1.2558	103.37	102.95	104.21	-2.0161					39	24	2	0	0	0	0.027446	1	9581	9581		42.864	0	1	67096	+		55412	31729	45760	45799	60518	60518					0.008860439694444722
STEPKIATN	9	Unmodified	_STEPKIATN_					0	0	0			REV__nc|ENSG00000165097|Q8NB78-2|KDM1B	REV__nc|ENSG00000165097|Q8NB78-2|KDM1B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.76824951171875	2	480.753464	959.492375	-0.95102	-0.00045721	1.4536	0.00069882	0.50256	0.00024161	480.7534500913046	53.995	1.2787	50.747	50.161	51.439	-3.2474					44	24	4	0	0	0	0.027441	1	3392	3392		58.782	11.125	1	96854	+		55413	21056	45761	45800	60519	60519					0.011008733096105061
STEPLLTTV	9	Unmodified	_STEPLLTTV_					0	0	0		ENSG00000184361|ENST00000331780|SPATA32	ENSG00000184361|ENST00000331780|SPATA32	ENSG00000184361|ENST00000331780|SPATA32	MULTI-MSMS	OvCa9_classI_Rep2	2	480.7668151855469	2	480.76604	959.517527	-1.3373	-0.00064294	2.5663	0.0012338	1.229	0.00059085	480.7671509238754	54.147	1.2965	51.333	50.825	52.122	-2.8139					48	25	2	0	0	0	0.31747	1	3697	3697		60.972	3.1607	1	272510			55414	8150	45762	45801	60520	60520					0.03614928112187954
STEQQVAL	8	Unmodified	_STEQQVAL_					0	0	0			REV__ENSG00000176809|ENST00000584306|LRRC37A3	REV__ENSG00000176809|ENST00000584306|LRRC37A3	MULTI-SECPEP	OvCa99_classI_Rep5	1	438.238037109375	2	438.227082	874.439611	1.4439	0.00063277	-0.76143	-0.00033368	0.6825	0.00029909	438.22659302270597	72.449	0.63416	72.449	72.208	72.842	0					23	15	2	0	0	0	0.028476	1	7022	7022		54.776	13.998	1	539380	+		55415	21963	45763	45802	60521	60521					-0.0026308475319183344
STESALDVRI	10	Unmodified	_STESALDVRI_					0	0	0			REV__ENSG00000188739|ENST00000408888|RBM34	REV__ENSG00000188739|ENST00000408888|RBM34	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.326171875	2	545.790578	1089.5666	1.2181	0.0006648	0.19157	0.00010456	1.4096	0.00076936	545.7902877162574	111.32	0.86263	111.32	111.16	112.02	0					41	18	3	0	0	0	0.026867	1	12631	12631		35.152	10.633	1	698500	+		55416	22732	45764	45803	60522	60522					0.0254021640114388
STETFWKW	8	Unmodified	_STETFWKW_					0	0	0		ENSG00000113594|ENST00000453190|LIFR;ENST00000503088.1_1_5:38490841-38530749:-|nuORF	ENSG00000113594|ENST00000453190|LIFR	ENSG00000113594|ENST00000453190|LIFR	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.3120727539062	2	542.758549	1083.50255	-0.3562	-0.00019333	-3.4321	-0.0018628	-3.7883	-0.0020561	542.7567678053464	64.431	0.9725	60.956	60.637	61.61	-3.475					30	19	2	0	0	0	0.028476	1	4568	4568		33.516	8.0654	1	142580			55417	2980	45765	45804	60523	60523					-0.03586518965130381
STEVGSRDSGP	11	Unmodified	_STEVGSRDSGP_					0	0	0			REV__nc|ENSG00000188677|Q9HBI1-2|PARVB	REV__nc|ENSG00000188677|Q9HBI1-2|PARVB	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.253173828125	2	546.251817	1090.48908	-1.0578	-0.00057781	4.3562	0.0023796	3.2985	0.0018018	546.2540824199572	120.78	3.5873	119.44	118.98	122.56	-1.3479					124	70	4	0	0	0	0.43993	1	11366	11366		58.23	0	1	370910	+		55418	29065	45766	45805	60524	60524					-0.05254421535050824
STGCHVDQP	9	Unmodified	_STGCHVDQP_					0	0	0			REV__ENST00000549804.6_1_15:25336847-25342514:+|nuORF	REV__ENST00000549804.6_1_15:25336847-25342514:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.8092346191406	2	472.200541	942.38653	1.8681	0.00088209	-0.62651	-0.00029584	1.2415	0.00058626	472.20001679584664	67.992	0.82881	64.502	64.235	65.064	-3.4902					25	16	2	0	0	0	0.02744	1	5068	5068		36.447	24.24	1	132420	+		55419	27459	45767	45806	60525	60525					-0.08696785807501328
STGITFILR	9	Unmodified	_STGITFILR_					0	0	0			REV__ENSG00000135144|ENST00000548759|DTX1	REV__ENSG00000135144|ENST00000548759|DTX1	MULTI-MSMS	OvCa9_classI_Rep2	2	504.2978515625	2	504.297842	1006.58113	-1.2162	-0.00061332	0.82605	0.00041658	-0.39013	-0.00019674	504.29821756982153	103.35	3.6196	102.66	102.28	105.9	-0.68459					195	72	4	0	0	0	0.44568	1	9537	9537		47.657	1.6851	1	812500	+		55420	19263	45768	45807	60526	60526					0.07810333339944009
STGKNLLV	8	Unmodified	_STGKNLLV_					0	0	0		ENSG00000143815|ENST00000272163|LBR;ENST00000441022.1_1_1:225591007-225592250:-|nuORF	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MULTI-MSMS	OvCa9_classI_Rep4_	4	416.25115966796875	2	416.25036	830.486168	0.17686	7.3619E-05	0.093558	3.8943E-05	0.27042	0.00011256	416.2502697188314	64.279	1.3118	60.804	60.345	61.657	-3.475					59	26	4	0	0	0	0.47599	2	4565	4565;4575		79.939	9.7027	1	624760			55421	5098	45769	45808	60527;60528	60527					0.06414399868765486
STGKNLLV	8	Unmodified	_STGKNLLV_					0	0	0		ENSG00000143815|ENST00000272163|LBR;ENST00000441022.1_1_1:225591007-225592250:-|nuORF	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MULTI-MATCH	OvCa9_classI_Rep2	2		2	416.25036	830.486168	-0.63385	-0.00026384	0.80933	0.00033689	0.17548	7.3043E-05	416.2506243253266	63.613	1.2596	60.869	60.213	61.473	-2.7444	0.032384	0.00036562	NaN	79.939	51	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167580			55422	5098	45769	45808							0.06414399868765486
STGLLFTRL	9	Unmodified	_STGLLFTRL_					0	0	0		ENST00000376609.1_1_17:47923566-47924646:+|nuORF	ENST00000376609.1_1_17:47923566-47924646:+|nuORF	ENST00000376609.1_1_17:47923566-47924646:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	504.29791259765625	2	504.297842	1006.58113	-1.2162	-0.00061332	0.82605	0.00041658	-0.39013	-0.00019674	504.29821756982153	103.35	3.6196	102.66	102.28	105.9	-0.68459					195	72	4	0	0	0	0.56189	1	9564	9564		36.447	0.82846	1	812500			55423	11075	45770	45809	60529	60529					0.0781033333993264
STGLLFTRL	9	Unmodified	_STGLLFTRL_					0	0	0		ENST00000376609.1_1_17:47923566-47924646:+|nuORF	ENST00000376609.1_1_17:47923566-47924646:+|nuORF	ENST00000376609.1_1_17:47923566-47924646:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	504.2974853515625	2	504.297842	1006.58113	-0.082287	-4.1497E-05	-0.36053	-0.00018182	-0.44282	-0.00022331	504.2976378271559	104.41	3.9037	102.97	102.5	106.4	-1.4347					184	75	5	0	0	0	0.38969	1	7278	7278		52.937	5.2794	1	927760			55424	11075	45770	45809	60530	60530					0.0781033333993264
STGLYVVIR	9	Unmodified	_STGLYVVIR_					0	0	0			REV__ENSG00000128342|ENST00000249075|LIF	REV__ENSG00000128342|ENST00000249075|LIF	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.29754638671875	2	504.297842	1006.58113	-0.73292	-0.00036961	0.18901	9.5318E-05	-0.5439	-0.00027429	504.2978909366257	105.14	3.2976	103.13	102.58	105.88	-2.0161					166	64	4	0	0	0	0.40667	1	9532	9532		51.335	5.3835	1	823080	+		55425	18853	45771	45810	60531	60531					0.07810333339944009
STGPPLWRP	9	Unmodified	_STGPPLWRP_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|150|1|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|150|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.233154296875	2	505.774534	1009.53451	-0.41648	-0.00021065	1.4394	0.00072801	1.0229	0.00051737	505.7750027751736	61.32	0.55685	61.32	61.028	61.585	0					20	12	2	0	0	0	0.027462	1	5417	5417		23.042	0	1	294100	+		55426	28190	45772	45811	60532	60532					0.030128935086622732
STGPPLWRP	9	Unmodified	_STGPPLWRP_					0	0	0			REV__Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|150|1|anti-sense	REV__Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|150|1|anti-sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	505.774534	1009.53451	-1.437	-0.00072678	2.9713	0.0015028	1.5343	0.00077602	506.2769452643178	63.737	0.37142	60.992	60.842	61.214	-2.7444	-0.16385	0.0010686	NaN	15.642	13	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10436	+		55427	28190	45772	45811							0.030128935086622732
STGSDPMGA	9	Unmodified	_STGSDPMGA_					0	0	0		ENSG00000115423|ENST00000389394|DNAH6;nc|ENSG00000115423|Q9C0G6-2|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	MULTI-MSMS	OvCa9_classI_Rep2	2	411.6673278808594	2	411.668543	821.322533	-4.0802	-0.0016797	0.072531	2.9859E-05	-4.0077	-0.0016498	411.6690234709274	161.87	1.214	161.64	161.33	162.54	-0.22696					65	23	4	0	0	0	0.6926	1	16505	16505		20.482	1.1219	1	44511			55428	3097	45773	45812	60533	60533					-0.09527565964447149
STGVKVVIR	9	Unmodified	_STGVKVVIR_					0	0	0			REV__tr|A0A7D6VUZ5|A0A7D6VUZ5_9CLOTGlutamate5-kinaseOS=ClostridiumintestinaleOX=36845GN=proBPE=3SV=1	REV__tr|A0A7D6VUZ5|A0A7D6VUZ5_9CLOTGlutamate5-kinaseOS=ClostridiumintestinaleOX=36845GN=proBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	479.805419921875	2	479.805834	957.597115	-1.1769	-0.00056468	0.97933	0.00046989	-0.19756	-9.4789E-05	479.80618413013457	55.51	2.1832	52.706	52.282	54.465	-2.804					112	43	4	0	0	0	0.22961	1	3892	3892		71.296	5.4925	1	873530	+		55429	31701	45774	45813	60534	60534					0.11662039576856387
STGVLRRLS	9	Unmodified	_STGVLRRLS_					0	0	0			REV__nc|ENSG00000061455|Q9NQX0-2|PRDM6	REV__nc|ENSG00000061455|Q9NQX0-2|PRDM6	MULTI-MSMS	OvCa99_classI_Rep5	1	494.799072265625	2	494.79854	987.582528	-0.64022	-0.00031678	-0.040673	-2.0125E-05	-0.68089	-0.0003369	494.7984220136329	40.303	1.4434	40.303	40.106	41.55	0					40	31	2	0	0	0	0.53483	1	2438	2438		39.253	1.4413	1	895970	+		55430	16744	45775	45814	60535	60535					0.08823967428713786
STGVVRLNTV	10	Unmodified	_STGVVRLNTV_					0	0	0		nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;TJP2|p.S1031Dfs*21|1|0.05|ENSG00000119139|chr9:69251132-69251133|-/TG|frameshift_variant;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	MSMS	OvCa9_classI_Rep4_	4	523.3053588867188	2	523.303655	1044.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.17	1	137.64	137.14	138.14	-1.5284								0	0	0	0.1384	1	13560	13560		31.53	1.2121	1				55431	3344	45776	45815	60536	60536					0.07224530363282611
STGYTGAPRG	10	Unmodified	_STGYTGAPRG_					0	0	0		tr|A0A7D6VRH7|A0A7D6VRH7_9CLOTCytidinedeaminaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19535PE=4SV=1	tr|A0A7D6VRH7|A0A7D6VRH7_9CLOTCytidinedeaminaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19535PE=4SV=1	tr|A0A7D6VRH7|A0A7D6VRH7_9CLOTCytidinedeaminaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19535PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.7672119140625	2	483.735606	965.456658	0.17274	8.3561E-05	0.74931	0.00036247	0.92205	0.00044603	483.7359860467877	57.499	0.16832	57.499	57.353	57.522	0					5	3	2	0	0	0	0.027198	1	4828	4828		14.137	0	1	194200			55432	34933	45777	45816	60537	60537					-0.027451641473703603
STHHHHHHL	9	Unmodified	_STHHHHHHL_					0	0	0		ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.8270263671875	2	571.77118	1141.52781	-0.25592	-0.00014633	-2.1549	-0.0012321	-2.4108	-0.0013784	571.7698807634497	51.117	0.38316	51.117	50.949	51.332	0					20	8	3	0	0	0	0.027462	1	3948	3948		17.365	6.4994	1	445610			55433	7871	45778	45817	60538	60538					-0.03729606599335966
STHHHHHHL	9	Unmodified	_STHHHHHHL_					0	0	0		ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	MULTI-MATCH	OvCa9_classI_Rep2	2		2	571.77118	1141.52781	-1.9022	-0.0010876	3.9694	0.0022696	2.0672	0.001182	571.7733299074048	53.632	1.0941	50.819	50.479	51.573	-2.8139	-0.075895	0.0022947	NaN	17.365	29	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32838			55434	7871	45778	45817							-0.03729606599335966
STHHHHHHL	9	Unmodified	_STHHHHHHL_					0	0	0		ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	571.77118	1141.52781	-1.0449	-0.00059746	3.6478	0.0020857	2.6028	0.0014882	571.7730806175524	53.996	0.97417	50.748	50.517	51.491	-3.2474	-0.1463	0.0019269	NaN	17.365	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123940			55435	7871	45778	45817							-0.03729606599335966
STINMLLPI	9	Unmodified	_STINMLLPI_					0	0	0			REV__tr|A0A553SLL4|A0A553SLL4_NIACILrgBfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20880PE=4SV=1	REV__tr|A0A553SLL4|A0A553SLL4_NIACILrgBfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20880PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.29241943359375	2	501.288628	1000.5627	1.3674	0.00068548	2.2705	0.0011382	3.6379	0.0018236	501.2895121117765	137.98	2.3901	136.45	135.78	138.17	-1.5284					99	50	3	0	0	0	0.58665	1	13478	13478		33.516	3.0119	1	64432	+		55436	30237	45779	45818	60539	60539					0.06244455373735036
STIRIKVAFA	10	Unmodified	_STIRIKVAFA_					0	0	0			REV__HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|241|3|anti-sense	REV__HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|241|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.3384399414062	2	553.340041	1104.66553	-4.5455	-0.0025152	0.49685	0.00027493	-4.0487	-0.0022403	553.340345188633	155.45	1.0287	153.96	153.73	154.76	-1.4911					55	29	3	0	0	0	0.69986	1	15392	15392		30.504	5.0535	1	130600	+		55437	28280	45780	45819	60540	60540					0.11738284156717782
STKNFRVSD	9	Unmodified	_STKNFRVSD_					0	0	0		nc|ENSG00000132485|O95218-2|ZRANB2;ENSG00000132485|ENST00000370920|ZRANB2	nc|ENSG00000132485|O95218-2|ZRANB2	nc|ENSG00000132485|O95218-2|ZRANB2	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.3414306640625	2	527.269813	1052.52507	-1.4195	-0.00074847	2.172	0.0011452	0.75245	0.00039674	527.7719231655974	87.143	0.50784	84.966	84.734	85.241	-2.1768					20	9	3	0	0	0	0.027353	1	5239	5239		44.377	1.981	1	18286			55438	4142	45781	45820	60541	60541					0.0009108043248033937
STKQKLEK	8	Unmodified	_STKQKLEK_					0	0	0		ENSG00000185825|ENST00000345046|BCAP31;nc|ENSG00000185825|P51572-2|BCAP31;ENST00000563143.2_1_16:32882346-32883351:+|nuORF	ENSG00000185825|ENST00000345046|BCAP31	ENSG00000185825|ENST00000345046|BCAP31	MSMS	OvCa9_classI_Rep2	2	481.2843017578125	2	481.287474	960.560395	NaN	NaN	NaN	NaN	NaN	NaN	NaN	159.84	1	159.61	159.11	160.11	-0.22696								0	0	0	0.30129	1	16252	16252		19.997	0	1				55439	8290	45782	45821	60542	60542					0.07853742960276122
STKVIKDI	8	Unmodified	_STKVIKDI_					0	0	0		nc|ENSG00000107938|Q3B7T1-4|EDRF1;nc|ENSG00000107938|Q3B7T1-3|EDRF1;ENST00000481600.5_1_10:127417653-127452038:+|nuORF;ENST00000525091.5_1_10:127408310-127436620:+|nuORF;nc|ENSG00000107938|Q3B7T1-5|EDRF1;ENSG00000107938|ENST00000356792|EDRF1	nc|ENSG00000107938|Q3B7T1-4|EDRF1	nc|ENSG00000107938|Q3B7T1-4|EDRF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	452.2799377441406	2	452.279118	902.543683	-0.83296	-0.00037673	-2.0392	-0.00092228	-2.8722	-0.001299	452.2780868849216	125.92	4.6201	124.51	123.31	127.93	-1.4143					122	91	2	0	0	0	0.75915	1	12098	12098		20.482	1.1219	1	24523			55440	2627	45783	45822	60543	60543					0.0885124207430863
STLGVIEAIA	10	Unmodified	_STLGVIEAIA_					0	0	0		nc|ENSG00000153707|P23468-2|PTPRD;ENSG00000153707|ENST00000381196|PTPRD;nc|ENSG00000153707|P23468-3|PTPRD;nc|ENSG00000153707|P23468-7|PTPRD;nc|ENSG00000153707|P23468-5|PTPRD;nc|ENSG00000153707|P23468-4|PTPRD;nc|ENSG00000153707|P23468-6|PTPRD	nc|ENSG00000153707|P23468-2|PTPRD	nc|ENSG00000153707|P23468-2|PTPRD	MULTI-MSMS	OvCa9_classI_Rep3	3	487.28265380859375	2	487.281857	972.549162	-1.0485	-0.0005109	0.41711	0.00020325	-0.63137	-0.00030765	487.2819843698998	95.08	2.6649	93.185	92.561	95.226	-1.8956					196	52	7	0	0	0	0.33376	1	6259	6259		76.774	7.9873	1	4110600			55441	5688	45784	45823	60544	60544					0.0617892086613665
STLITAIIA	9	Unmodified	_STLITAIIA_					0	0	0			REV__tr|A0A553SLJ7|A0A553SLJ7_NIACINCS2familypermeaseOS=NialliacirculansOX=1397GN=CEQ21_20770PE=3SV=1	REV__tr|A0A553SLJ7|A0A553SLJ7_NIACINCS2familypermeaseOS=NialliacirculansOX=1397GN=CEQ21_20770PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	451.7801818847656	2	451.781493	901.548434	-1.186	-0.00053581	-2.2466	-0.001015	-3.4325	-0.0015508	451.78046832513644	137.21	1.1187	136.13	135.81	136.93	-1.0858					37	22	2	0	0	0	0.70177	1	11189	11189		17.365	4.4058	1	36642	+		55442	30231	45785	45824	60545	60545					0.09372126217090226
STLLLLLLKH	10	Unmodified	_STLLLLLLKH_					0	0	0		NRF1-FAM40B|1|fusion;nc|ENSG00000128578|Q9ULQ0-2|STRIP2;NRF1-FAM40B|2|fusion;ENSG00000128578|ENST00000249344|STRIP2;STRIP2|p.N588Tfs*21|1|0.05|ENSG00000128578|chr7:129464723-129464723|C/-|frameshift_variant	NRF1-FAM40B|1|fusion	NRF1-FAM40B|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8801879882812	2	575.881542	1149.74853	0.38494	0.00022168	-0.56152	-0.00032337	-0.17658	-0.00010169	575.8811011364741	129.09	1.384	128.87	128.43	129.81	-0.22697					68	27	4	0	0	0	0.72319	1	12703	12703		27.882	6.9353	1	149030			55443	3886	45786	45825	60546	60546					0.17964600884715765
STLLQALAL	9	Unmodified	_STLLQALAL_					0	0	0			REV__nc|ENSG00000276717|A8MTI9|PRSS47P	REV__nc|ENSG00000276717|A8MTI9|PRSS47P	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.2979431152344	2	465.286943	928.559333	2.7646	0.0012863	0.11462	5.3333E-05	2.8792	0.0013397	465.2869192143991	102.73	1.1832	102.73	102.08	103.26	0					42	27	2	0	0	0	0.027449	1	11408	11408		40.573	19.626	1	303770	+		55444	29195	45787	45826	60547	60547					0.09219528591347625
STLQILPTV	9	Unmodified	_STLQILPTV_					0	0	0		ENSG00000171587|ENST00000400454|DSCAM;nc|ENSG00000171587|O60469-2|DSCAM	ENSG00000171587|ENST00000400454|DSCAM	ENSG00000171587|ENST00000400454|DSCAM	MULTI-MSMS	OvCa9_classI_Rep2	2	486.291259765625	2	486.292225	970.569897	-0.28888	-0.00014048	-2.8179	-0.0013703	-3.1067	-0.0015108	486.2907334904176	46.526	1.9813	43.817	43.349	45.331	-2.7097					83	39	4	0	0	0	0.48324	1	2764	2764		44.117	5.3107	1	653600			55445	7215	45788	45827	60548	60548					0.08343511245800528
STLTCRLL	8	Carbamidomethyl (C)	_STLTC(Carbamidomethyl (C))RLL_	STLTC(1)RLL		STLTC(88)RLL		0	1	0		ENST00000393145.5_1_16:89216565-89216679:+|nuORF	ENST00000393145.5_1_16:89216565-89216679:+|nuORF	ENST00000393145.5_1_16:89216565-89216679:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	482.2677917480469	2	482.268227	962.521901	0.4736	0.0002284	-4.0575	-0.0019568	-3.5839	-0.0017284	482.2662579892328	72.554	2.7982	72.554	70.994	73.792	0					137	69	4	0	0	0	0.40148	1	7078	7078		87.754	10.908	1	30649000			55446	11240	45789	45828	60549	60549	117				0.03914114054134643
STLTHPQRRID	11	Unmodified	_STLTHPQRRID_					0	0	0		nc|ENSG00000115085|P43403-3|ZAP70;ENSG00000115085|ENST00000264972|ZAP70	nc|ENSG00000115085|P43403-3|ZAP70	nc|ENSG00000115085|P43403-3|ZAP70	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.2666931152344	3	441.909109	1322.7055	-0.68469	-0.00030257	0.43168	0.00019076	-0.25302	-0.00011181	441.90925308176037	63.27	1.8392	59.795	59.48	61.319	-3.475					88	37	4	0	0	0	0.025863	1	4419	4419		25.068	0	1	601440			55447	3060	45790	45829	60550	60550					0.057051790893410725
STLTHPQRRID	11	Unmodified	_STLTHPQRRID_					0	0	0		nc|ENSG00000115085|P43403-3|ZAP70;ENSG00000115085|ENST00000264972|ZAP70	nc|ENSG00000115085|P43403-3|ZAP70	nc|ENSG00000115085|P43403-3|ZAP70	MULTI-MATCH	OvCa9_classI_Rep2	2		3	441.909109	1322.7055	-0.3517	-0.00015542	0.27521	0.00012162	-0.076489	-3.3801E-05	441.9091751035129	62.494	1.5415	59.735	59.286	60.827	-2.7593	-0.030003	-9.3587E-05	NaN	25.068	81	29	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187930			55448	3060	45790	45829							0.057051790893410725
STNGIKFKI	9	Unmodified	_STNGIKFKI_					0	0	0		ENSG00000038002|ENST00000264595|AGA	ENSG00000038002|ENST00000264595|AGA	ENSG00000038002|ENST00000264595|AGA	MULTI-MSMS	OvCa9_classI_Rep2	2	504.2964172363281	2	504.297842	1006.58113	-1.2162	-0.00061332	0.82605	0.00041658	-0.39013	-0.00019674	504.29821756982153	103.35	3.6196	102.66	102.28	105.9	-0.68459					195	72	4	0	0	0	0.34132	1	9619	9619		58.23	3.4652	1	812500			55449	1093	45791	45830	60551	60551					0.0781033333993264
STPACSEGN	9	Unmodified	_STPACSEGN_					0	0	0		nc|ENSG00000104368|P00750-2|PLAT;nc|ENSG00000104368|P00750-3|PLAT;ENSG00000104368|ENST00000220809|PLAT	nc|ENSG00000104368|P00750-2|PLAT	nc|ENSG00000104368|P00750-2|PLAT	MULTI-MSMS	OvCa9_classI_Rep3	3	433.17181396484375	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.65371	1	1701	1701		25.574	1.07	1	60065			55450	2371	45792	45831	60552	60552					-0.10924467452775843
STPDFRKL	8	Unmodified	_STPDFRKL_					0	0	0		ENST00000534991.3_1_21:33765925-33766057:+|nuORF	ENST00000534991.3_1_21:33765925-33766057:+|nuORF	ENST00000534991.3_1_21:33765925-33766057:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.2669982910156	2	482.266542	962.51853	-0.33974	-0.00016384	-0.77675	-0.0003746	-1.1165	-0.00053844	482.2658388333067	76.377	1.8145	73.438	72.985	74.799	-2.9389					82	37	3	0	0	0	0.59148	1	6088	6088		65.803	12.452	1	1177500			55451	13367	45793	45832	60553	60553					0.03577187271753246
STPETIQRQVR	11	Unmodified	_STPETIQRQVR_					0	0	0			REV__ENSG00000110975|ENST00000228567|SYT10	REV__ENSG00000110975|ENST00000228567|SYT10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	439.5748596191406	3	438.908997	1313.70516	0.42362	0.00018593	-3.5306	-0.0015496	-3.1069	-0.0013637	439.2414008396815	64.673	0.4377	61.187	60.969	61.407	-3.4854					11	8	2	0	0	0	0.026145	1	4589	4589		12.957	0	1	13395	+		55452	18013	45794	45833	60554	60554					0.06085759369443622
STPGNGATP	9	Unmodified	_STPGNGATP_					0	0	0		nc|ENSG00000066248|Q8N5V2-2|NGEF;nc|ENSG00000066248|Q8N5V2-3|NGEF;ENSG00000066248|ENST00000264051|NGEF	nc|ENSG00000066248|Q8N5V2-2|NGEF	nc|ENSG00000066248|Q8N5V2-2|NGEF	MULTI-MSMS	OvCa9_classI_Rep2	2	401.19061279296875	2	401.1905	800.366446	-0.33216	-0.00013326	0.61593	0.00024711	0.28377	0.00011385	401.19068995636417	37.659	1.3309	34.95	34.731	36.062	-2.7097					48	26	4	0	0	0	0.24951	1	1708	1708		68.787	4.5796	1	204500			55453	1347	45795	45834	60555	60555					-0.04172213475806075
STPLTGSIDDL	11	Unmodified	_STPLTGSIDDL_					0	0	0			REV__ENSG00000274211|ENST00000612932|SOCS7	REV__ENSG00000274211|ENST00000612932|SOCS7	MULTI-MSMS	OvCa9_classI_Rep2	2	559.7833251953125	2	559.782418	1117.55028	-0.68858	-0.00038545	1.5404	0.00086229	0.85183	0.00047684	559.783083785333	140.27	1.7727	140.04	139.7	141.47	-0.22696					65	35	3	0	0	0	0.69455	1	14046	14046		31.53	4.8369	1	124330	+		55454	23621	45796	45835	60556	60556					-0.0037890955561579176
STPRLFSI	8	Unmodified	_STPRLFSI_					0	0	0		nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-7|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2	MULTI-MSMS	OvCa99_classI_Rep5	1	460.7650451660156	2	460.763635	919.512717	2.5052	0.0011543	-0.36301	-0.00016726	2.1422	0.00098704	460.7633011089813	100.61	0.82691	100.61	100.32	101.15	0					46	19	3	0	0	0	0.48084	1	11184	11184		79.451	5.196	1	3411300			55455	15118	45797	45836	60557	60557					0.04974088760093309
STSLLNSMTI	10	Unmodified	_STSLLNSMTI_					0	0	0		nc|ENSG00000168781|Q6PFW1-6|PPIP5K1;ENST00000488768.5_1_15:43865553-43876720:-|nuORF;nc|ENSG00000168781|Q6PFW1-5|PPIP5K1;nc|ENSG00000168781|Q6PFW1-7|PPIP5K1;nc|ENSG00000168781|Q6PFW1-4|PPIP5K1;nc|ENSG00000168781|Q6PFW1-3|PPIP5K1;nc|ENSG00000168781|Q6PFW1-2|PPIP5K1;nc|ENSG00000168781|Q6PFW1|PPIP5K1;ENSG00000168781|ENST00000420765|PPIP5K1	nc|ENSG00000168781|Q6PFW1-6|PPIP5K1	nc|ENSG00000168781|Q6PFW1-6|PPIP5K1	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.8001098632812	2	533.776082	1065.53761	-0.15183	-8.1045E-05	-2.7502	-0.001468	-2.902	-0.001549	533.774301551265	61.108	1.2254	61.108	60.559	61.784	0					73	28	4	0	0	0	0.026826	1	5369	5369		36.447	12.924	1	1785900			55456	6941	45798	45837	60558	60558					0.007463557805067467
STSQAAIAEL	10	Unmodified	_STSQAAIAEL_					0	0	0		ENST00000559530.1_1_15:32058089-32058740:-|nuORF;ENST00000488146.5_1_1:68942617-68947320:-|nuORF;nc|ENSG00000024526|Q5TB30-2|DEPDC1;chr1:68481612-68483950|382|13.57|0.32|5.39|-|ENST00000370966|DEPDC1,DEPDC1;ENSG00000024526|ENST00000456315|DEPDC1	ENST00000559530.1_1_15:32058089-32058740:-|nuORF	ENST00000559530.1_1_15:32058089-32058740:-|nuORF	MSMS	OvCa99_classI_Rep5	1	495.76031494140625	2	495.758746	989.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.587	1	51.587	51.087	52.087	0								0	0	0	0.12661	1	3990	3990		58.23	4.8785	1				55457	266	45799	45838	60559	60559					0.007768559640339845
STSVPLAR	8	Unmodified	_STSVPLAR_					0	0	0		nc|ENSG00000053524|Q86YR7-4|MCF2L2;ENSG00000053524|ENST00000328913|MCF2L2;nc|ENSG00000053524|Q86YR7-3|MCF2L2;nc|ENSG00000053524|Q86YR7-2|MCF2L2;MCF2L2|p.K797Nfs*12|1|0.42|ENSG00000053524|chr3:183216065-183216074|TGCTGAATCT/-|frameshift_variant;ENST00000488149.5_1_3:182948954-183027611:-|nuORF	nc|ENSG00000053524|Q86YR7-4|MCF2L2	nc|ENSG00000053524|Q86YR7-4|MCF2L2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.7459411621094	2	415.74016	829.465767	1.3074	0.00054355	4.3645	0.0018145	5.6719	0.002358	415.7418765760521	85.049	0.48854	82.402	82.072	82.561	-2.6463					12	9	2	0	0	0	0.028476	1	7103	7103		35.618	0	1	12211			55458	1198	45800	45839	60560	60560					0.044212292089468974
STTYMFFL	8	Unmodified	_STTYMFFL_					0	0	0			REV__ENSG00000144935|ENST00000476941|TRPC1	REV__ENSG00000144935|ENST00000476941|TRPC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.233154296875	2	505.238604	1008.46266	-0.45199	-0.00022836	-4.1189	-0.002081	-4.5709	-0.0023094	505.23514618156867	61.385	0.34486	61.385	61.113	61.458	0					10	7	2	0	0	0	0.028476	1	5417	5417		42.474	19.432	1	58936	+		55459	19945	45801	45840	60561	60561					-0.04123781960061024
STVKNTKLKI	10	Unmodified	_STVKNTKLKI_					0	0	0			REV__ENST00000492650.1_1_13:53000173-53001170:-|nuORF	REV__ENST00000492650.1_1_13:53000173-53001170:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.3176879882812	2	566.358431	1130.70231	0.022792	1.2908E-05	-2.5828	-0.0014628	-2.56	-0.0014499	566.3571908025641	56.35	0.44647	56.35	56.135	56.581	0					16	10	2	0	0	0	0.027305	1	4686	4686		112.11	29.802	1	130010	+		55460	26694	45802	45841	60562	60562					0.1421853598258167
STVQHKVAK	9	Unmodified	_STVQHKVAK_					0	0	0		ENSG00000157881|ENST00000378466|PANK4	ENSG00000157881|ENST00000378466|PANK4	ENSG00000157881|ENST00000378466|PANK4	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.7771301269531	2	499.293091	996.571629	-0.31726	-0.0001584	0.28132	0.00014046	-0.035935	-1.7942E-05	499.2930663082617	47.401	0.3005	47.401	47.251	47.551	0					11	6	2	0	0	0	0.027447	1	3390	3390		56.721	18.91	1	122490			55461	5917	45803	45842	60563	60563					0.07320565054419603
STVVAKKL	8	Unmodified	_STVVAKKL_					0	0	0			REV__CNTRL|p.A984V|1|0.09|ENSG00000119397|chr9:121143982-121143982|C/T|missense_variant	REV__CNTRL|p.A984V|1|0.09|ENSG00000119397|chr9:121143982-121143982|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	423.2750549316406	2	423.276378	844.538203	-1.5369	-0.00065052	-1.6206	-0.00068596	-3.1575	-0.0013365	423.27558847705467	140.82	1.576	139.79	139.38	140.96	-1.0339					74	31	4	0	0	0	0.75915	1	11635	11635		20.482	0	1	296010	+		55462	16159	45804	45843	60564	60564					0.10971563282521402
STYYVPGSLLG	11	Unmodified	_STYYVPGSLLG_					0	0	0		ENST00000403682.7_1_22:20748811-20761255:+|nuORF;nc|ENSG00000185252|Q16587-4|ZNF74;nc|ENSG00000185252|Q16587-2|ZNF74;ENST00000476678.1_1_22:20755529-20761255:+|nuORF;nc|ENSG00000185252|Q16587-3|ZNF74;ENSG00000185252|ENST00000400451|ZNF74	ENST00000403682.7_1_22:20748811-20761255:+|nuORF	ENST00000403682.7_1_22:20748811-20761255:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	578.7899780273438	2	578.797872	1155.58119	-7.2267	-0.0041828	-4.1931	-0.002427	-11.42	-0.0066098	578.7954844331674	158.61	3.485	157.34	154.49	157.97	-1.267					113	86	2	0	0	0	0.67529	1	13595	13595		37.812	8.662	1	22822			55463	11442	45805	45844	60565	60565					0.009622885492944988
SVAALSCFML	10	Carbamidomethyl (C)	_SVAALSC(Carbamidomethyl (C))FML_	SVAALSC(1)FML		SVAALSC(69)FML		0	1	0		CCL15|p.L11F|1|0.72|ENSG00000275718|chr17:36001462-36001462|G/A|missense_variant	CCL15|p.L11F|1|0.72|ENSG00000275718|chr17:36001462-36001462|G/A|missense_variant	CCL15|p.L11F|1|0.72|ENSG00000275718|chr17:36001462-36001462|G/A|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	549.7714233398438	2	549.769745	1097.52494	1.5079	0.00082899	0.67387	0.00037047	2.1818	0.0011995	549.7698311608885	127.67	0.50108	127.67	127.45	127.95	0					22	10	3	0	0	0	0.3976	1	14795	14795		68.787	19.345	1	471570			55464	198	45806	45845	60566	60566	1				-0.019923788833921208
SVAANSILIP	10	Unmodified	_SVAANSILIP_					0	0	0			REV__ENST00000490365.1_1_10:76744849-76785012:+|nuORF	REV__ENST00000490365.1_1_10:76744849-76785012:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3243713378906	2	492.78985	983.565146	-0.43608	-0.00021489	-2.0625	-0.0010164	-2.4985	-0.0012313	492.79002578995556	78.678	1.5995	76.326	75.85	77.45	-2.3527					49	31	2	0	0	0	0.026646	1	4319	4319		45.022	18.329	1	214050	+		55465	20489	45807	45846	60567	60567					0.07270627103048355
SVAANSILIP	10	Unmodified	_SVAANSILIP_					0	0	0			REV__ENST00000490365.1_1_10:76744849-76785012:+|nuORF	REV__ENST00000490365.1_1_10:76744849-76785012:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	492.78985	983.565146	1.9056	0.00093908	0.38758	0.00019099	2.2932	0.0011301	492.78988719825134	76.721	0.5181	76.721	76.443	76.961	0	0.23054	0.0011073	NaN	37.508	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	449520	+		55466	20489	45807	45846							0.07270627103048355
SVAFGLRPL	9	Unmodified	_SVAFGLRPL_					0	0	0			REV__ENSG00000101407|ENST00000373447|TTI1	REV__ENSG00000101407|ENST00000373447|TTI1	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2577819824219	2	480.287277	958.560001	-0.1938	-9.3078E-05	3.6903	0.0017724	3.4965	0.0016793	480.28882961560646	73.322	0.3658	73.322	73.113	73.479	0					19	8	3	0	0	0	0.027426	1	7172	7172		53.351	10.955	1	678940	+		55467	17500	45808	45847	60568	60568					0.07906368031081001
SVAFSKFE	8	Unmodified	_SVAFSKFE_					0	0	0		nc|ENSG00000143476|Q9NZJ0-2|DTL;ENSG00000143476|ENST00000366991|DTL	nc|ENSG00000143476|Q9NZJ0-2|DTL	nc|ENSG00000143476|Q9NZJ0-2|DTL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	457.7569274902344	2	457.734543	913.454533	-2.183	-0.00099923	-2.7272	-0.0012483	-4.9102	-0.0022476	457.7331276520169	49.456	0.93159	46.315	46.043	46.974	-3.1416					31	17	2	0	0	0	0.028476	1	2853	2853		68.485	0	1	241410			55468	5060	45809	45848	60569	60569					-0.00565592885186561
SVAGKIHTV	9	Unmodified	_SVAGKIHTV_					0	0	0		nc|ENSG00000243244|Q9Y6Q2-3|STON1;nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;ENSG00000243244|ENST00000404752|STON1	nc|ENSG00000243244|Q9Y6Q2-3|STON1	nc|ENSG00000243244|Q9Y6Q2-3|STON1	MULTI-MSMS	OvCa99_classI_Rep5	1	456.268798828125	2	456.269084	910.523616	-0.16414	-7.4894E-05	-0.36701	-0.00016746	-0.53116	-0.00024235	456.26891948551145	40.689	2.0207	40.689	40.432	42.453	0					121	45	5	0	0	0	0.035142	2	2494	2472;2494		131.03	22.944	1	14812000			55469	1397	45810	45849	60570;60571	60571					0.06477491134364755
SVAGKIHTV	9	Unmodified	_SVAGKIHTV_					0	0	0		nc|ENSG00000243244|Q9Y6Q2-3|STON1;nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;ENSG00000243244|ENST00000404752|STON1	nc|ENSG00000243244|Q9Y6Q2-3|STON1	nc|ENSG00000243244|Q9Y6Q2-3|STON1	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.2702941894531	2	456.269084	910.523616	-0.48298	-0.00022037	0.61379	0.00028006	0.13082	5.9689E-05	456.269113640269	46.129	1.2963	43.056	42.666	43.962	-3.0724					58	24	4	0	0	0	0.1944	1	2399	2399		77.318	7.69	1	265830			55470	1397	45810	45849	60572	60572					0.06477491134364755
SVAGKIHTV	9	Unmodified	_SVAGKIHTV_					0	0	0		nc|ENSG00000243244|Q9Y6Q2-3|STON1;nc|ENSG00000243244|Q9Y6Q2-2|STON1;ENSG00000068781|ENST00000394754|STON1-GTF2A1L;ENSG00000243244|ENST00000404752|STON1	nc|ENSG00000243244|Q9Y6Q2-3|STON1	nc|ENSG00000243244|Q9Y6Q2-3|STON1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	456.269084	910.523616	0.88852	0.0004054	-0.90466	-0.00041277	-0.016148	-7.3676E-06	456.26847722443017	45.819	1.047	43.11	42.847	43.894	-2.7097	0.02657	-0.00068992	NaN	77.318	34	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58466			55471	1397	45810	45849							0.06477491134364755
SVAIFTTILTK	11	Unmodified	_SVAIFTTILTK_					0	0	0		tr|A0A553SFZ5|A0A553SFZ5_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09830PE=4SV=1	tr|A0A553SFZ5|A0A553SFZ5_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09830PE=4SV=1	tr|A0A553SFZ5|A0A553SFZ5_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09830PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.3582153320312	2	597.360639	1192.70673	-4.9941	-0.0029833	1.4674	0.00087657	-3.5267	-0.0021067	597.361356414137	157.6	0.96988	156.05	155.73	156.7	-1.545					62	25	3	0	0	0	0.72516	1	15618	15618		13.454	1.943	1	81979			55472	33098	45811	45850	60573	60573					0.11808000405494568
SVAKERARLQL	11	Unmodified	_SVAKERARLQL_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	OvCa9_classI_Rep2	2	424.2576904296875	3	424.257849	1269.75172	-1.0833	-0.0004596	1.0427	0.00044237	-0.040602	-1.7226E-05	424.2582278417872	54.36	1.6434	51.546	51.275	52.918	-2.8139					88	32	4	0	0	0	0.6112	2	3743	3731;3743		43.651	14.1	1	452900			55473	6091	45812	45851	60574;60575	60575					0.12763243991435047
SVAKKSEEKLE	11	Unmodified	_SVAKKSEEKLE_					0	0	0			REV__ENSG00000092200|ENST00000400017|RPGRIP1	REV__ENSG00000092200|ENST00000400017|RPGRIP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	417.2009582519531	3	416.566237	1246.67688	-0.068181	-2.8402E-05	1.4019	0.00058399	1.3337	0.00055558	416.56682404006256	52.001	0.55866	52.001	51.788	52.347	0					20	12	2	0	0	0	0.025988	1	4057	4057		32.034	0	1	306790	+		55474	17265	45813	45852	60576	60576					0.06341016669534838
SVAKLILV	8	Unmodified	_SVAKLILV_					0	0	0		ENST00000452385.5_1_3:48982572-49020700:+|nuORF;ENSG00000177479|ENST00000356401|ARIH2;ENST00000584680.1_1_18:26231883-26232303:+|nuORF	ENST00000452385.5_1_3:48982572-49020700:+|nuORF	ENST00000452385.5_1_3:48982572-49020700:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	422.5636291503906	2	421.789121	841.56369	0.32383	0.00013659	2.7511	0.0011604	3.075	0.001297	421.7902224954479	46.641	0.30717	46.641	46.501	46.809	0					10	6	2	0	0	0	0.028476	1	3323	3323		21.702	0	1	88658			55475	7687	45814	45853	60577	60577					0.13657037804955507
SVAKLKQLNN	10	Unmodified	_SVAKLKQLNN_					0	0	0		tr|A0A553SIC6|A0A553SIC6_NIACIPeptidoglycanendopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_14495PE=3SV=1	tr|A0A553SIC6|A0A553SIC6_NIACIPeptidoglycanendopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_14495PE=3SV=1	tr|A0A553SIC6|A0A553SIC6_NIACIPeptidoglycanendopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_14495PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.2747192382812	2	557.83258	1113.65061	0.10494	5.8538E-05	-0.42906	-0.00023935	-0.32413	-0.00018081	557.8322267905177	47.459	0.47301	47.459	47.251	47.724	0					16	10	2	0	0	0	0.026734	1	3440	3440		31.53	0	1	478150			55476	33367	45815	45854	60578	60578					0.09832792288693781
SVAKLWEI	8	Unmodified	_SVAKLWEI_					0	0	0		ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	ENSG00000101138|ENST00000217109|CSTF1	MULTI-MSMS	OvCa99_classI_Rep5	1	473.2757873535156	2	473.273835	944.533118	2.5309	0.0011978	-0.27469	-0.00013	2.2562	0.0010678	473.27351221050105	106.2	0.79455	106.2	105.88	106.67	0					41	17	4	0	0	0	0.50206	2	11932	11932;11958		77.318	13.096	1	1209000			55477	2141	45816	45855	60579;60580	60579					0.05863259419891165
SVAKTILKR	9	Unmodified	_SVAKTILKR_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	508.3336486816406	2	508.334759	1014.65496	0.30857	0.00015686	-0.69089	-0.0003512	-0.38232	-0.00019435	508.3343179408748	43.443	1.9869	40.733	40.361	42.348	-2.7097					104	39	4	0	0	0	0.029147	9	2416	2393;2397;2403;2410;2416;2423;2430;2436;2443		136.27	72.061	1	758010			55478	3052	45817	45856	60581;60582;60583;60584;60585;60586;60587;60588;60589	60585					0.14822301502283608
SVAKTILKR	9	Unmodified	_SVAKTILKR_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.3359375	2	508.334759	1014.65496	-1.3435	-0.00068294	0.74523	0.00037883	-0.59826	-0.00030412	508.33511073921755	43.623	1.9868	40.615	40.378	42.365	-3.0074					108	38	4	0	0	0	0.011767	6	2107	2098;2107;2120;2131;2144;2158		163.15	69.955	1	2166800			55479	3052	45817	45856	60590;60591;60592;60593;60594;60595	60591					0.14822301502283608
SVALAVLALLS	11	Unmodified	_SVALAVLALLS_					0	0	0		ENSG00000166710|ENST00000648006|B2M;ENST00000559720.5_1_15:45003705-45007919:+|nuORF	ENSG00000166710|ENST00000648006|B2M	ENSG00000166710|ENST00000648006|B2M	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.3106689453125	2	528.8368	1055.65905	-0.62889	-0.00033258	-2.1643	-0.0011446	-2.7932	-0.0014771	528.835060576997	47.607	0.80195	44.5	44.237	45.039	-3.1077					25	15	2	0	0	0	0.025806	1	2629	2629		24.519	0	1	20417			55480	6703	45818	45857	60596	60596					0.13344346205326474
SVALKGHSL	9	Unmodified	_SVALKGHSL_					0	0	0		ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	ENSG00000178163|ENST00000326756|ZNF518B	MULTI-MSMS	OvCa99_classI_Rep5	1	456.2696838378906	2	456.269084	910.523616	-0.16414	-7.4894E-05	-0.36701	-0.00016746	-0.53116	-0.00024235	456.26891948551145	40.689	2.0207	40.689	40.432	42.453	0					121	45	5	0	0	0	0.2422	1	2528	2528		69.628	5.4204	1	14812000			55481	7735	45819	45858	60597	60597					0.06477491134376123
SVAMGSTHPDL	11	Unmodified	_SVAMGSTHPDL_					0	0	0			REV__tr|A0A553SUG9|A0A553SUG9_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_07010PE=4SV=1	REV__tr|A0A553SUG9|A0A553SUG9_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_07010PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.2747192382812	2	557.763506	1113.51246	0.079541	4.4365E-05	3.8114	0.0021258	3.8909	0.0021702	557.76282193165	47.538	0.47515	47.538	47.379	47.854	0					22	10	3	0	0	0	0.025257	1	3440	3440		36.447	0	1	84359	+		55482	31075	45820	45859	60598	60598					-0.039756990220894295
SVANNRLFV	9	Unmodified	_SVANNRLFV_					0	0	0		nc|ENSG00000271793|O60506-4|SYNCRIP;nc|ENSG00000271793|O60506-3|SYNCRIP;nc|ENSG00000271793|O60506-2|SYNCRIP;ENSG00000135316|ENST00000369622|SYNCRIP;nc|ENSG00000271793|O60506-5|SYNCRIP;nc|ENSG00000125944|O43390-4|HNRNPR;nc|ENSG00000125944|O43390-3|HNRNPR;ENSG00000125944|ENST00000302271|HNRNPR;nc|ENSG00000125944|O43390-2|HNRNPR	nc|ENSG00000271793|O60506-4|SYNCRIP	nc|ENSG00000271793|O60506-4|SYNCRIP	MULTI-MSMS	OvCa99_classI_Rep5	1	510.2864990234375	2	510.285266	1018.55598	1.3524	0.00069013	0.52389	0.00026733	1.8763	0.00095746	510.2854371750728	79.151	0.99779	79.151	78.668	79.666	0					61	24	4	0	0	0	0.053172	1	8056	8056		116.9	40.057	1	5866900			55483	4365	45821	45860	60599	60599					0.047442785373846164
SVAQLLLSK	9	Unmodified	_SVAQLLLSK_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A;ENST00000541335.1_1_12:431581-432275:-|nuORF	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-MSMS	OvCa9_classI_Rep2	2	479.8008728027344	2	479.800217	957.585882	-0.078932	-3.7872E-05	-0.11226	-5.3863E-05	-0.19119	-9.1734E-05	479.7999950987491	96.183	1.1855	95.155	94.813	95.999	-1.0281					48	23	3	0	0	0	0.31122	1	8671	8671		61.691	10.499	1	208520			55484	1495	45822	45861	60600	60600					0.10539217482710228
SVAQLLLSK	9	Unmodified	_SVAQLLLSK_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A;ENST00000541335.1_1_12:431581-432275:-|nuORF	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-MSMS	OvCa9_classI_Rep3	3	479.801025390625	2	479.800217	957.585882	-0.33287	-0.00015971	0.2917	0.00013996	-0.041172	-1.9755E-05	479.80012566325394	97.013	1.6745	95.184	94.879	96.554	-1.8286					75	32	4	0	0	0	0.18887	1	6416	6416		78.264	10.77	1	303350			55485	1495	45822	45861	60601	60601					0.10539217482710228
SVAQLLLSK	9	Unmodified	_SVAQLLLSK_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A;ENST00000541335.1_1_12:431581-432275:-|nuORF	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.8011474609375	2	479.800217	957.585882	0.6793	0.00032593	-0.75053	-0.0003601	-0.071227	-3.4175E-05	479.79971261114326	97.623	1.3666	95.245	95.013	96.38	-2.3786					56	26	3	0	0	0	0.35521	1	8656	8656		56.632	7.0962	1	285700			55486	1495	45822	45861	60602	60602					0.10539217482710228
SVASAAAVLSH	11	Unmodified	_SVASAAAVLSH_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.84368896484375	2	506.774731	1011.53491	-0.92598	-0.00046927	0.52478	0.00026595	-0.4012	-0.00020332	506.7749533008212	76.151	1.5574	74.297	73.689	75.247	-1.854					62	29	3	0	0	0	0.02539	1	6283	6283		51.193	6.8155	1	242640			55487	3322	45823	45862	60603	60603					0.029602684378460253
SVASAAAVLSH	11	Unmodified	_SVASAAAVLSH_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.7756042480469	2	506.774731	1011.53491	-0.72586	-0.00036785	0.43291	0.00021939	-0.29295	-0.00014846	506.7749819395836	77.038	1.3563	74.222	73.907	75.263	-2.8165					65	27	4	0	0	0	0.073217	1	6146	6146		136.27	29.261	1	783720			55488	3322	45823	45862	60604	60604					0.029602684378460253
SVASISLTK	9	Unmodified	_SVASISLTK_					0	0	0		ENST00000298289.6_1_14:50085755-50087389:-|nuORF	ENST00000298289.6_1_14:50085755-50087389:-|nuORF	ENST00000298289.6_1_14:50085755-50087389:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	453.2686767578125	2	453.26875	904.522947	-0.12228	-5.5426E-05	-0.07503	-3.4009E-05	-0.19731	-8.9435E-05	453.2685658422405	70.684	2.1394	67.202	66.589	68.728	-3.4812					107	43	4	0	0	0	0.28934	3	5354	5354;5367;5379		64.207	9.431	1	1444400			55489	10154	45824	45863	60605;60606;60607	60605					0.06686651694667489
SVASISLTK	9	Unmodified	_SVASISLTK_					0	0	0		ENST00000298289.6_1_14:50085755-50087389:-|nuORF	ENST00000298289.6_1_14:50085755-50087389:-|nuORF	ENST00000298289.6_1_14:50085755-50087389:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	453.26875	904.522947	1.6038	0.00072693	-1.548	-0.00070167	0.055736	2.5263E-05	453.2679029643624	69.843	2.015	67.273	66.515	68.53	-2.5707	0.035125	-0.00024166	NaN	64.207	80	39	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	295290			55490	10154	45824	45863							0.06686651694667489
SVATIVIVDI	10	Unmodified	_SVATIVIVDI_					0	0	0		ENST00000526146.5_1_11:118184333-118186254:+|nuORF;ENST00000531913.1_1_11:118183295-118186254:+|nuORF;ENSG00000198851|ENST00000361763|CD3E	ENST00000526146.5_1_11:118184333-118186254:+|nuORF	ENST00000526146.5_1_11:118184333-118186254:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	515.3113403320312	2	515.313158	1028.61176	-2.0827	-0.0010732	-0.8907	-0.00045899	-2.9734	-0.0015322	515.312623228854	35.485	1.3896	32.775	32.503	33.893	-2.7097					66	27	3	0	0	0	0.59703	1	1437	1437		42.396	1.618	1	694720			55491	8889	45825	45864	60608	60608					0.098600669343341
SVAWKALPN	9	Unmodified	_SVAWKALPN_					0	0	0			REV__DMWD|p.G283S|1|0.33|ENSG00000185800|chr19:45786649-45786649|C/T|missense_variant	REV__DMWD|p.G283S|1|0.33|ENSG00000185800|chr19:45786649-45786649|C/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.7991943359375	2	493.276909	984.539266	0.52427	0.00025861	1.7349	0.00085579	2.2592	0.0011144	493.27764713283096	81.412	0.61702	81.412	81.037	81.654	0					25	14	2	0	0	0	0.02741	1	8338	8338		71.296	0	1	1955000	+		55492	16308	45826	45865	60609	60609					0.046377776514077595
SVCSSLHPSWL	11	Unmodified	_SVCSSLHPSWL_					0	0	0		ENST00000398073.6_1_12:58216199-58216532:-|nuORF	ENST00000398073.6_1_12:58216199-58216532:-|nuORF	ENST00000398073.6_1_12:58216199-58216532:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	608.2969970703125	2	608.294973	1214.57539	3.6539	0.0022227	-0.80473	-0.00048951	2.8492	0.0017331	608.2942855637167	59.026	3.3501	55.911	55.036	58.386	-3.1147					203	93	3	0	0	0	0.69808	1	1864	1864		30.318	3.6248	1	283460			55493	11364	45827	45866	60610	60610					-0.023311332340199442
SVDEKDKRA	9	Unmodified	_SVDEKDKRA_					0	0	0		tr|A0A7D6ZEW2|A0A7D6ZEW2_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15375PE=4SV=1	tr|A0A7D6ZEW2|A0A7D6ZEW2_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15375PE=4SV=1	tr|A0A7D6ZEW2|A0A7D6ZEW2_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_15375PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	524.2771606445312	2	524.275095	1046.53564	0.77919	0.00040851	2.5971	0.0013616	3.3763	0.0017701	524.2763197731864	41.272	1.9717	38.562	38.093	40.065	-2.7097					88	39	4	0	0	0	0.22961	1	2164	2164		71.296	4.8664	1	944830			55494	35491	45828	45867	60611	60611					0.01423063086917864
SVDELGQPF	9	Unmodified	_SVDELGQPF_					0	0	0			REV__DPEP3|p.L408Nfs*3|1|0.04|ENSG00000141096|chr16:67976176-67976177|-/TT|frameshift_variant	REV__DPEP3|p.L408Nfs*3|1|0.04|ENSG00000141096|chr16:67976176-67976177|-/TT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.7533874511719	2	496.24019	990.465826	-0.31448	-0.00015606	-4.0063	-0.0019881	-4.3208	-0.0021441	496.2381507961023	56.403	0.82624	56.403	56.178	57.004	0					37	19	3	0	0	0	0.027433	1	4687	4687		51.335	10.557	1	2450700	+		55495	16337	45829	45868	60612	60612					-0.029788155817072948
SVDFNEIRVDY	11	Unmodified	_SVDFNEIRVDY_					0	0	0			REV__nc|ENSG00000161204|Q9NUQ8-2|ABCF3	REV__nc|ENSG00000161204|Q9NUQ8-2|ABCF3	MULTI-SECPEP	OvCa99_classI_Rep5	1	452.7478942871094	3	452.885858	1355.63574	-0.33462	-0.00015155	-4.3311	-0.0019615	-4.6657	-0.002113	453.2184500339848	33.83	0.67571	33.83	33.533	34.209	0					18	13	2	0	0	0	0.025668	1	1600	1600		42.338	20.558	1	23147	+		55496	20692	45830	45869	60613	60613					-0.027847443699556607
SVDGPRLDSP	10	Unmodified	_SVDGPRLDSP_					0	0	0			REV__ENST00000473714.1_1_7:134645295-134650155:+|nuORF	REV__ENST00000473714.1_1_7:134645295-134650155:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.7630004882812	2	521.76182	1041.50909	-0.16513	-8.6161E-05	-0.69111	-0.0003606	-0.85625	-0.00044676	521.7613964382147	61.249	1.4473	57.819	57.395	58.842	-3.43					66	29	3	0	0	0	0.28422	2	4186	4186;4196		82.75	11.617	1	1220200	+		55497	18615	45831	45870	60614;60615	60614					-0.010006258044313654
SVDMHSLIL	9	Unmodified	_SVDMHSLIL_					0	0	0			REV__ENSG00000243073|ENST00000235349|PRAMEF4	REV__ENSG00000243073|ENST00000235349|PRAMEF4	MULTI-MSMS	OvCa9_classI_Rep3	3	507.7665100097656	2	507.76806	1013.52157	-0.36325	-0.00018445	-2.974	-0.0015101	-3.3372	-0.0016945	507.76638761877894	131.88	1.6751	130.75	129.96	131.63	-1.1249					88	33	4	0	0	0	0.59983	1	10515	10515		31.955	0	1	127470	+		55498	23462	45832	45871	60616	60616					0.015346943342706254
SVDPKNYPK	9	Unmodified	_SVDPKNYPK_					0	0	0		ENST00000491056.5_1_2:113587940-113590763:-|nuORF;ENSG00000125538|ENST00000263341|IL1B	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	524.2774047851562	2	524.277106	1046.53966	0.77919	0.00040851	-1.2393	-0.00064976	-0.46015	-0.00024125	524.2763197731864	41.272	1.9717	38.562	38.093	40.065	-2.7097					88	39	4	0	0	0	0.059253	5	2152	2140;2152;2158;2182;2194		113.41	35.865	1	944830			55499	3716	45833	45872	60617;60618;60619;60620;60621	60618					0.01825152580613576
SVDPKNYPK	9	Unmodified	_SVDPKNYPK_					0	0	0		ENST00000491056.5_1_2:113587940-113590763:-|nuORF;ENSG00000125538|ENST00000263341|IL1B	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	ENST00000491056.5_1_2:113587940-113590763:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.276611328125	2	524.277106	1046.53966	-1.4064	-0.00073734	0.69358	0.00036363	-0.71282	-0.00037371	524.2773318859194	41.29	2.6423	38.309	37.763	40.405	-2.9804					91	50	4	0	0	0	0.13482	3	1843	1843;1856;1900		87.754	10.915	1	1482900			55500	3716	45833	45872	60622;60623;60624	60622					0.01825152580613576
SVDVVPPAQTI	11	Unmodified	_SVDVVPPAQTI_					0	0	0		tr|A0A553STM6|A0A553STM6_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05440PE=3SV=1	tr|A0A553STM6|A0A553STM6_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05440PE=3SV=1	tr|A0A553STM6|A0A553STM6_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05440PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.7664794921875	2	563.311146	1124.60774	0.33575	0.00018913	-0.5936	-0.00033438	-0.25785	-0.00014525	563.3104282892924	43.132	0.42244	43.132	42.97	43.393	0					15	9	3	0	0	0	0.025656	1	2852	2852		40.058	3.6114	1	139090			55501	34506	45834	45873	60625	60625					0.050419774406236684
SVEDWVLN	8	Unmodified	_SVEDWVLN_					0	0	0			REV__ENSG00000179041|ENST00000320270|RRS1	REV__ENSG00000179041|ENST00000320270|RRS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.773681640625	2	481.234907	960.455261	-0.73715	-0.00035474	-4.027	-0.001938	-4.7642	-0.0022927	481.2328464352907	44.303	0.66978	44.303	44.08	44.75	0					27	14	3	0	0	0	0.028476	1	2978	2978		44.117	0	1	475880	+		55502	22094	45835	45874	60626	60626					-0.02654798236130773
SVEHNLNVKKL	11	Unmodified	_SVEHNLNVKKL_					0	0	0			REV__ENSG00000118246|ENST00000402774|FASTKD2	REV__ENSG00000118246|ENST00000402774|FASTKD2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	427.2538757324219	3	427.582221	1279.72483	0.63184	0.00027016	-4.1777	-0.0017863	-3.5459	-0.0015162	427.58176227644054	38.75	0.49492	35.824	35.552	36.047	-2.9264					11	9	2	0	0	0	0.025445	1	1562	1562		50.034	0	1	11708	+		55503	18387	45836	45875	60627	60627					0.09616135380224478
SVELIEVLK	9	Unmodified	_SVELIEVLK_					0	0	0		tr|A0A7D6VS91|A0A7D6VS91_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_04885PE=4SV=1	tr|A0A7D6VS91|A0A7D6VS91_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_04885PE=4SV=1	tr|A0A7D6VS91|A0A7D6VS91_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_04885PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.3117065429688	2	515.313158	1028.61176	0.67052	0.00034553	-3.9395	-0.0020301	-3.269	-0.0016846	515.3111559710834	35.314	1.6978	32.465	32.19	33.887	-2.849					108	33	5	0	0	0	0.50149	1	1178	1178		42.396	0	1	2437400			55504	34998	45837	45876	60628	60628					0.098600669343341
SVELRGSAL	9	Unmodified	_SVELRGSAL_					0	0	0			REV__ENST00000540651.5_1_1:228270530-228284925:+|nuORF	REV__ENST00000540651.5_1_1:228270530-228284925:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.2649841308594	2	466.263999	930.513445	0.33405	0.00015576	-1.4311	-0.00066728	-1.0971	-0.00051152	466.2631676719331	60.203	0.78593	56.773	56.309	57.095	-3.43					51	15	5	0	0	0	0.074342	1	4063	4063		104.75	3.1458	1	2387300	+		55505	27356	45838	45877	60629	60629					0.04540883409140406
SVFALVGLQL	10	Unmodified	_SVFALVGLQL_					0	0	0		ENSG00000185313|ENST00000449082|SCN10A;SCN10A|p.S441Ffs*8|1|0.05|ENSG00000185313|chr3:38755902-38755927|AGGTGATCCATTGTGGGAGTGGAGAG/-|frameshift_variant;SCN10A|p.F1193Sfs*12|1|0.06|ENSG00000185313|chr3:38718756-38718757|-/G|frameshift_variant;SCN4A|p.L654Qfs*60|1|0.1|ENSG00000007314|chr17:63959323-63959324|-/AAGTATTTACAAGTGAAATTATATGTTGGGATTT|frameshift_variant;SCN4A|p.L707Wfs*88|1|0.09|ENSG00000007314|chr17:63957419-63957419|G/-|frameshift_variant;ENSG00000007314|ENST00000435607|SCN4A	ENSG00000185313|ENST00000449082|SCN10A;ENSG00000007314|ENST00000435607|SCN4A	ENSG00000185313|ENST00000449082|SCN10A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.7769165039062	2	523.815867	1045.61718	-1.4709	-0.00077046	-3.2384	-0.0016963	-4.7093	-0.0024668	523.8142566120832	42.436	1.1837	39.456	38.906	40.09	-2.9804					55	22	4	0	0	0	0.026915	1	1990	1990		27.882	7.8855	1	167430			55506	8247;899	45839	45878	60630	60630					0.09619790516831017
SVFALVGLQL	10	Unmodified	_SVFALVGLQL_					0	0	0		ENSG00000185313|ENST00000449082|SCN10A;SCN10A|p.S441Ffs*8|1|0.05|ENSG00000185313|chr3:38755902-38755927|AGGTGATCCATTGTGGGAGTGGAGAG/-|frameshift_variant;SCN10A|p.F1193Sfs*12|1|0.06|ENSG00000185313|chr3:38718756-38718757|-/G|frameshift_variant;SCN4A|p.L654Qfs*60|1|0.1|ENSG00000007314|chr17:63959323-63959324|-/AAGTATTTACAAGTGAAATTATATGTTGGGATTT|frameshift_variant;SCN4A|p.L707Wfs*88|1|0.09|ENSG00000007314|chr17:63957419-63957419|G/-|frameshift_variant;ENSG00000007314|ENST00000435607|SCN4A	ENSG00000185313|ENST00000449082|SCN10A;ENSG00000007314|ENST00000435607|SCN4A	ENSG00000185313|ENST00000449082|SCN10A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	523.815867	1045.61718	1.1504	0.00060262	-5.2629	-0.0027568	-4.1125	-0.0021542	523.8128656657093	42.123	0.54317	39.413	39.226	39.769	-2.7097	-0.021451	-0.0014144	NaN	27.882	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33019			55507	8247;899	45839	45878							0.09619790516831017
SVFIHQPRA	9	Unmodified	_SVFIHQPRA_					0	0	0		ENSG00000136197|ENST00000350427|C7orf25;nc|nan|Q9BPX7-2|C7orf25	ENSG00000136197|ENST00000350427|C7orf25	ENSG00000136197|ENST00000350427|C7orf25	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.771484375	2	527.793258	1053.57196	-0.1142	-6.0276E-05	1.8877	0.00099631	1.7735	0.00093604	528.2969783061915	96.695	0.5382	95.736	95.53	96.068	-0.95857					16	10	2	0	0	0	0.027462	1	8737	8737		16.473	1.6083	1	13985			55508	4470	45840	45879	60631	60631					0.04731984774275588
SVFKSARQK	9	Unmodified	_SVFKSARQK_					0	0	0		nc|ENSG00000080503|P51531-2|SMARCA2;ENSG00000080503|ENST00000349721|SMARCA2	nc|ENSG00000080503|P51531-2|SMARCA2	nc|ENSG00000080503|P51531-2|SMARCA2	MULTI-MSMS	OvCa9_classI_Rep2	2	525.8060302734375	2	525.806365	1049.59818	-0.34219	-0.00017993	0.25644	0.00013484	-0.085757	-4.5091E-05	525.8063062141417	32.07	0.84194	29.36	29.184	30.025	-2.7097					31	16	3	0	0	0	0.40818	1	1032	1032		51.193	1.7511	1	101830			55509	1636	45841	45880	60632	60632					0.07536253945750104
SVFNHAIRH	9	Unmodified	_SVFNHAIRH_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	OvCa9_classI_Rep2	2	540.7882690429688	2	540.788507	1079.56246	-1.0326	-0.00055844	0.82089	0.00044393	-0.21176	-0.00011452	540.7888065572392	46.49	1.487	43.781	43.399	44.885	-2.7097					74	29	4	0	0	0	0.055627	5	2777	2766;2771;2777;2784;2789		115.49	56.712	1	353360			55510	9559	45842	45881	60633;60634;60635;60636;60637	60635					0.02586216488748505
SVFNHAIRH	9	Unmodified	_SVFNHAIRH_					0	0	0		ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	ENSG00000273749|ENST00000617928|CYFIP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.7896118164062	2	540.788507	1079.56246	-0.88004	-0.00047592	0.59307	0.00032073	-0.28697	-0.00015519	540.7887877174653	46.957	1.7792	43.885	43.552	45.331	-3.0724					87	34	4	0	0	0	0.066102	3	2489	2489;2499;2511		109.48	52.285	1	894640			55511	9559	45842	45881	60638;60639;60640	60638					0.02586216488748505
SVFPVAGACH	10	Unmodified	_SVFPVAGACH_					0	0	0		ENSG00000083812|ENST00000196482|ZNF324	ENSG00000083812|ENST00000196482|ZNF324	ENSG00000083812|ENST00000196482|ZNF324	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.24090576171875	2	494.23947	986.464386	-1.0808	-0.0005342	3.2978	0.0016299	2.2169	0.0010957	494.2409077517265	120.07	0.78532	118.73	118.46	119.24	-1.3444					35	14	3	0	0	0	0.52321	1	11286	11286		51.335	17.163	1	72689			55512	1701	45843	45882	60641	60641					-0.029387281514686947
SVFRLLIKS	9	Unmodified	_SVFRLLIKS_					0	0	0		ENST00000549478.1_1_12:104350783-104350876:-|nuORF	ENST00000549478.1_1_12:104350783-104350876:-|nuORF	ENST00000549478.1_1_12:104350783-104350876:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.2835693359375	2	531.837134	1061.65972	0.73057	0.00038854	-2.4413	-0.0012984	-1.7107	-0.00090981	531.8348890633794	81.362	0.57416	81.362	81.08	81.654	0					23	13	2	0	0	0	0.027462	1	8344	8344		20.947	4.4738	1	639010			55513	13574	45844	45883	60642	60642					0.1313518564502374
SVFVKNVGWA	10	Unmodified	_SVFVKNVGWA_					0	0	0		ENST00000510192.1_1_4:128814366-128819693:+|nuORF;nc|ENSG00000142731|O00444-3|PLK4;nc|ENSG00000142731|O00444-2|PLK4;ENSG00000142731|ENST00000270861|PLK4	ENST00000510192.1_1_4:128814366-128819693:+|nuORF	ENST00000510192.1_1_4:128814366-128819693:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8038330078125	2	553.803291	1105.59203	0.10514	5.823E-05	-0.21358	-0.00011828	-0.10844	-6.0052E-05	553.802890130317	102.62	1.2053	100.42	100.04	101.25	-2.1994					40	22	3	0	0	0	0.5675	1	9246	9246		45.972	11.8	1	142730			55514	4993	45845	45884	60643	60643					0.043457357142415276
SVFVKNVGWA	10	Unmodified	_SVFVKNVGWA_					0	0	0		ENST00000510192.1_1_4:128814366-128819693:+|nuORF;nc|ENSG00000142731|O00444-3|PLK4;nc|ENSG00000142731|O00444-2|PLK4;ENSG00000142731|ENST00000270861|PLK4	ENST00000510192.1_1_4:128814366-128819693:+|nuORF	ENST00000510192.1_1_4:128814366-128819693:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	553.803291	1105.59203	2.4722	0.0013691	-5.1549	-0.0028548	-2.6827	-0.0014857	553.8029447336457	100.62	0.48994	100.62	100.32	100.81	0	0.12275	-0.0053372	NaN	45.972	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	595540			55515	4993	45845	45884							0.043457357142415276
SVFVKNVGWA	10	Unmodified	_SVFVKNVGWA_					0	0	0		ENST00000510192.1_1_4:128814366-128819693:+|nuORF;nc|ENSG00000142731|O00444-3|PLK4;nc|ENSG00000142731|O00444-2|PLK4;ENSG00000142731|ENST00000270861|PLK4	ENST00000510192.1_1_4:128814366-128819693:+|nuORF	ENST00000510192.1_1_4:128814366-128819693:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	553.803291	1105.59203	-0.41938	-0.00023225	-0.2582	-0.00014299	-0.67758	-0.00037525	553.8030305611469	101.21	0.79213	100.44	100.02	100.81	-0.764	-0.051371	8.6423E-05	NaN	45.972	42	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120710			55516	4993	45845	45884							0.043457357142415276
SVFVYWLFFDR	11	Unmodified	_SVFVYWLFFDR_					0	0	0		ENST00000265044.6_1_3:156260720-156260924:-|nuORF	ENST00000265044.6_1_3:156260720-156260924:-|nuORF	ENST00000265044.6_1_3:156260720-156260924:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.8039245605469	3	493.587084	1477.73942	0.072671	3.5869E-05	-3.5944	-0.0017742	-3.5217	-0.0017383	493.5852160426246	71.593	1.4841	68.991	68.633	70.117	-2.6023					62	29	3	0	0	0	0.026232	1	3446	3446		11.455	1.8085	1	42989			55517	9942	45846	45885	60644	60644					0.019662075283349623
SVFYTVIPPTL	11	Unmodified	_SVFYTVIPPTL_					0	0	0		ENSG00000204695|ENST00000641895|OR14J1	ENSG00000204695|ENST00000641895|OR14J1	ENSG00000204695|ENST00000641895|OR14J1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	413.7621765136719	3	412.900668	1235.68018	-0.098596	-4.071E-05	-3.4521	-0.0014254	-3.5507	-0.0014661	412.89910528778427	73.995	0.80599	70.765	70.531	71.337	-3.2308					31	16	2	0	0	0	0.025668	1	5824	5824		22.562	0	1	113270			55518	9021	45847	45886	60645	60645					0.07176311514172085
SVGAKQKKW	9	Unmodified	_SVGAKQKKW_					0	0	0		ENSG00000158292|ENST00000377893|GPR153	ENSG00000158292|ENST00000377893|GPR153	ENSG00000158292|ENST00000377893|GPR153	MULTI-MSMS	OvCa9_classI_Rep2	2	516.3026123046875	2	516.303458	1030.59236	-1.364	-0.00070426	0.62015	0.00032019	-0.7439	-0.00038408	516.3037096883031	61.9	2.366	59.14	58.568	60.934	-2.7593					127	45	4	0	0	0	0.068524	3	4629	4617;4629;4642		108.09	34.113	1	1077700			55519	5943	45848	45887	60646;60647;60648	60647					0.07829155434069435
SVGAKQKKW	9	Unmodified	_SVGAKQKKW_					0	0	0		ENSG00000158292|ENST00000377893|GPR153	ENSG00000158292|ENST00000377893|GPR153	ENSG00000158292|ENST00000377893|GPR153	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.3037719726562	2	516.303458	1030.59236	-0.62044	-0.00032034	-0.28232	-0.00014576	-0.90276	-0.0004661	516.303207209785	62.857	2.0837	59.399	58.962	61.046	-3.4577					108	42	4	0	0	0	0.14998	2	4388	4388;4401		84.916	22.808	1	1463100			55520	5943	45848	45887	60649;60650	60649					0.07829155434069435
SVGATKGKEP	10	Unmodified	_SVGATKGKEP_					0	0	0		nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4;ENSG00000069020|ENST00000403625|MAST4	nc|ENSG00000069020|O15021-2|MAST4	nc|ENSG00000069020|O15021-2|MAST4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.28839111328125	2	487.269281	972.52401	1.4146	0.00068927	-0.92276	-0.00044963	0.49181	0.00023964	487.26864094551644	85.116	0.39667	82.469	82.263	82.66	-2.6463					13	7	2	0	0	0	0.026891	1	7126	7126		31.53	16.665	1	36800			55521	1403	45849	45888	60651	60651					0.03664866063570571
SVGATKGKEP	10	Unmodified	_SVGATKGKEP_					0	0	0		nc|ENSG00000069020|O15021-2|MAST4;nc|ENSG00000069020|O15021-3|MAST4;nc|ENSG00000069020|O15021-6|MAST4;ENSG00000069020|ENST00000403625|MAST4	nc|ENSG00000069020|O15021-2|MAST4	nc|ENSG00000069020|O15021-2|MAST4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	487.269281	972.52401	-0.61332	-0.00029885	1.411	0.00068752	0.79765	0.00038867	487.2699425479214	84.003	0.87878	82.457	82.122	83.001	-1.5462	0.10819	0.001174	NaN	24.519	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22936			55522	1403	45849	45888							0.03664866063570571
SVGCLFTLML	10	Unmodified	_SVGCLFTLML_					0	0	0		L1PA2_dup1619|chr5:71851116-71854174:+|2.376726425342643|0.0208621851436049|6.83|429.0|134|2|anti-sense	L1PA2_dup1619|chr5:71851116-71854174:+|2.376726425342643|0.0208621851436049|6.83|429.0|134|2|anti-sense	L1PA2_dup1619|chr5:71851116-71854174:+|2.376726425342643|0.0208621851436049|6.83|429.0|134|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.7931518554688	2	542.282489	1082.55042	1.9509	0.0010579	4.2777	0.0023197	6.2286	0.0033777	542.2847300039213	77.627	1.4541	77.627	76.639	78.093	0					70	34	3	0	0	0	0.026734	1	7873	7873		39.253	0	1	2182100			55523	14670	45850	45889	60652	60652					0.012450956390239298
SVGDILRLL	9	Unmodified	_SVGDILRLL_					0	0	0		ENSG00000142207|ENST00000382751|URB1;ENST00000480196.2_1_21:33705566-33706642:-|nuORF	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.3050537109375	2	493.305667	984.596781	0.78121	0.00038538	-0.82362	-0.0004063	-0.042409	-2.092E-05	493.30512009054945	141.25	1.3098	139.79	139.5	140.81	-1.4627					38	24	2	0	0	0	0.44568	1	13803	13803		47.657	5.2612	1	44412			55524	4962	45851	45890	60653	60653					0.10386619857001733
SVGFIGAGQLA	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SVGFIGAGQLA_					1	0	0		ENST00000478402.5_1_1:226111340-226111810:-|nuORF;nc|ENSG00000183010|P32322-2|PYCR1;ENSG00000183010|ENST00000329875|PYCR1;ENSG00000143811|ENST00000343818|PYCR2;nc|ENSG00000183010|P32322-3|PYCR1	ENST00000478402.5_1_1:226111340-226111810:-|nuORF	ENST00000478402.5_1_1:226111340-226111810:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	531.2864379882812	2	531.284931	1060.55531	0.40523	0.00021529	-0.77564	-0.00041209	-0.37041	-0.00019679	531.2844670916394	162.4	0.50168	162.4	162.02	162.53	0					35	9	6	0	0	0	0.017509	1	19038	19038		155.58	75.872	1	1009300			55525	5097	45852	45891	60654	60654					0.02745439097657254
SVGGIFASL	9	Unmodified	_SVGGIFASL_					0	0	0		tr|A0A553SPV1|A0A553SPV1_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_10400PE=4SV=1	tr|A0A553SPV1|A0A553SPV1_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_10400PE=4SV=1	tr|A0A553SPV1|A0A553SPV1_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_10400PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	425.7380065917969	2	425.737086	849.459619	1.0285	0.00043788	-0.8692	-0.00037005	0.15933	6.7832E-05	425.7366052806573	96.621	1.6646	94.195	93.913	95.577	-2.4256					79	32	4	0	0	0	0.098892	1	8574	8574		97.473	0	1	775360			55526	34091	45853	45892	60655	60655					0.028867109774296296
SVGGLTLVD	9	Unmodified	_SVGGLTLVD_					0	0	0			REV__ENSG00000185722|ENST00000341657|ANKFY1	REV__ENSG00000185722|ENST00000341657|ANKFY1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	429.9260559082031	2	430.739825	859.465098	0.52619	0.00022665	-0.55028	-0.00023703	-0.024088	-1.0376E-05	430.7395061773678	52.176	0.65728	48.968	48.692	49.349	-3.208					18	12	2	0	0	0	0.027448	1	3101	3101		27.882	0	1	25313	+		55527	22522	45854	45893	60656	60656					0.02974389769235586
SVGGPIRRR	9	Unmodified	_SVGGPIRRR_					0	0	0			REV__ENSG00000196581|ENST00000378191|AJAP1	REV__ENSG00000196581|ENST00000378191|AJAP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.3038635253906	2	499.304324	996.594095	-0.31184	-0.0001557	2.8446	0.0014203	2.5328	0.0012646	499.30534753927776	93.478	0.57368	92.31	92.054	92.628	-1.168					12	10	2	0	0	0	0.027462	1	8362	8362		6.7355	3.3255	1	14628	+		55528	22845	45855	45894	60657	60657					0.09566209242700552
SVGHATFI	8	Unmodified	_SVGHATFI_					0	0	0			REV__tr|A0A553SKQ4|A0A553SKQ4_NIACI4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=NialliacirculansOX=1397GN=ispHPE=3SV=1	REV__tr|A0A553SKQ4|A0A553SKQ4_NIACI4-hydroxy-3-methylbut-2-enyldiphosphatereductaseOS=NialliacirculansOX=1397GN=ispHPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.89794921875	2	416.221603	830.428653	-0.004476	-1.863E-06	-4.0297	-0.0016773	-4.0342	-0.0016791	416.2199499353195	28.804	0.2993	28.804	28.638	28.937	0					9	5	2	0	0	0	0.028476	1	955	955		30.504	0	1	26140	+		55529	30144	45856	45895	60658	60658					0.006655576631828808
SVGIILPLSL	10	Unmodified	_SVGIILPLSL_					0	0	0		ENSG00000139209|ENST00000266579|SLC38A4;SLC38A4|p.I247Tfs*33|1|0.17|ENSG00000139209|chr12:46778754-46778755|-/G|frameshift_variant	ENSG00000139209|ENST00000266579|SLC38A4	ENSG00000139209|ENST00000266579|SLC38A4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.8115234375	2	506.326068	1010.63758	0.081173	4.11E-05	-1.8839	-0.00095385	-1.8027	-0.00091275	506.32462279246084	89.509	1.187	86.934	86.364	87.551	-2.575					49	23	3	0	0	0	0.026688	1	7728	7728		19.104	0	1	120780			55530	4756	45857	45896	60659	60659					0.13268961176606808
SVGIWRQLRAW	11	Unmodified	_SVGIWRQLRAW_					0	0	0			REV__ENST00000402010.6_1_11:63676765-63677272:+|nuORF	REV__ENST00000402010.6_1_11:63676765-63677272:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.3144836425781	3	457.926322	1370.75714	-0.16372	-7.4973E-05	3.4532	0.0015813	3.2895	0.0015064	458.26201859651684	71.445	0.23988	71.445	71.267	71.507	0					8	5	2	0	0	0	0.026174	1	6905	6905		22.562	5.8442	1	171460	+		55531	25417	45858	45897	60660	60660					0.08658967573887821
SVGKAINMIN	10	Unmodified	_SVGKAINMIN_					0	0	0		tr|A0A7D7A134|A0A7D7A134_9CLOTTransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_13775PE=4SV=1	tr|A0A7D7A134|A0A7D7A134_9CLOTTransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_13775PE=4SV=1	tr|A0A7D7A134|A0A7D7A134_9CLOTTransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_13775PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.7933349609375	2	523.786784	1045.55902	-0.77332	-0.00040505	-4.487	-0.0023502	-5.2603	-0.0027553	523.7837134799757	39.028	0.26966	39.028	38.882	39.151	0					8	5	2	0	0	0	0.026891	1	2260	2260		24.519	0	1	55870			55532	36023	45859	45898	60661	60661					0.038057855998886225
SVGKLKGVSG	10	Unmodified	_SVGKLKGVSG_					0	0	0			REV__tr|A0A553SJB1|A0A553SJB1_NIACICopperchaperoneCopZOS=NialliacirculansOX=1397GN=CEQ21_16425PE=4SV=1	REV__tr|A0A553SJB1|A0A553SJB1_NIACICopperchaperoneCopZOS=NialliacirculansOX=1397GN=CEQ21_16425PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	466.2822570800781	2	466.282192	930.549831	-2.6152	-0.0012194	2.1372	0.00099653	-0.47797	-0.00022287	466.2831375283496	36.825	2.2186	34.116	33.893	36.112	-2.7097					109	44	4	0	0	0	0.45822	1	1674	1674		60.118	4.6141	1	2007800	+		55533	29988	45860	45899	60662	60662					0.08177760305852644
SVGKWVLVV	9	Unmodified	_SVGKWVLVV_					0	0	0			REV__tr|A0A7D6VMP7|A0A7D6VMP7_9CLOTPAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16200PE=4SV=1	REV__tr|A0A7D6VMP7|A0A7D6VMP7_9CLOTPAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16200PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.7571105957031	2	493.805303	985.596052	-0.44597	-0.00022022	-4.0351	-0.0019925	-4.481	-0.0022128	493.80313306115454	47.604	0.56099	47.604	47.336	47.897	0					18	12	2	0	0	0	0.027462	1	3450	3450		29.15	0	1	595670	+		55534	31143	45861	45900	60663	60663					0.10267825207949954
SVGLALVML	9	Unmodified	_SVGLALVML_					0	0	0			REV__ENSG00000109182|ENST00000226432|CWH43	REV__ENSG00000109182|ENST00000226432|CWH43	MULTI-MSMS	OvCa9_classI_Rep4_	4	451.77093505859375	2	451.772614	901.530675	0.53905	0.00024353	-4.2574	-0.0019234	-3.7183	-0.0016798	451.77058250866264	109.33	1.4061	107.6	107.33	108.73	-1.7256					71	26	4	0	0	0	0.10416	1	10041	10041		96.048	2.0413	1	496170	+		55535	17924	45862	45901	60664	60664					0.07597087690589888
SVGLENEVMA	10	Unmodified	_SVGLENEVMA_					0	0	0			REV__tr|A0A553STB2|A0A553STB2_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04515PE=3SV=1	REV__tr|A0A553STB2|A0A553STB2_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04515PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.7946166992188	2	524.752607	1047.49066	-0.74807	-0.00039255	-0.35401	-0.00018577	-1.1021	-0.00057832	524.7526036337182	39.568	0.64486	36.641	36.395	37.04	-2.9264					22	12	2	0	0	0	0.026891	1	1676	1676		12.812	0	1	36987	+		55536	30942	45863	45902	60665	60665					-0.031185037706336516
SVGLHLIGILD	11	Unmodified	_SVGLHLIGILD_					0	0	0			REV__KIAA1549L|p.P313L|1|0.05|ENSG00000110427|chr11:33543392-33543392|C/T|missense_variant	REV__KIAA1549L|p.P313L|1|0.05|ENSG00000110427|chr11:33543392-33543392|C/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.8023681640625	2	568.837331	1135.66011	2.461	0.0013999	3.2079	0.0018248	5.669	0.0032247	568.838743192506	91.635	0.75294	91.635	91.255	92.008	0					31	17	3	0	0	0	0.026137	1	9917	9917		13.454	0	1	405610	+		55537	28332	45864	45903	60666	60666					0.09770560574247611
SVGLLVHLLN	10	Unmodified	_SVGLLVHLLN_					0	0	0			REV__ENST00000374050.3_1_9:117360575-117360629:+|nuORF	REV__ENST00000374050.3_1_9:117360575-117360629:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.7914428710938	2	532.826766	1063.63898	0.85848	0.00045742	-1.9076	-0.0010164	-1.0491	-0.000559	532.82563943064	105.64	0.98875	104.29	104.09	105.08	-1.3482					24	18	2	0	0	0	0.026994	1	7411	7411		32.812	11.865	1	30076	+		55538	25057	45865	45904	60667	60667					0.10970595265393968
SVGLTGILFL	10	Unmodified	_SVGLTGILFL_					0	0	0			REV__ENST00000533853.1_1_11:61109248-61110039:+|nuORF	REV__ENST00000533853.1_1_11:61109248-61110039:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.3098449707031	2	510.310418	1018.60628	-2.5279	-0.00129	2.5124	0.0012821	-0.015515	-7.9176E-06	510.31151958350677	126.07	1.2741	124.65	124.34	125.61	-1.4143					54	25	4	0	0	0	0.56767	1	11989	11989		45.952	0	1	109760	+		55539	27261	45866	45905	60668	60668					0.09772388142516775
SVGLVRRSP	9	Unmodified	_SVGLVRRSP_					0	0	0		ENST00000436179.1_3_7:39663639-39663861:+|nuORF	ENST00000436179.1_3_7:39663639-39663861:+|nuORF	ENST00000436179.1_3_7:39663639-39663861:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.27294921875	2	485.793258	969.571963	-0.10588	-5.1437E-05	-0.078372	-3.8073E-05	-0.18426	-8.951E-05	485.7929080581642	62.248	0.83305	58.79	58.475	59.309	-3.4577					23	16	2	0	0	0	0.027304	1	4288	4288		58.23	0	1	41392			55540	11873	45867	45906	60669	60669					0.08595984774285625
SVGLYALLIY	10	Unmodified	_SVGLYALLIY_					0	0	0			REV__nc|ENSG00000164418|Q13002-3|GRIK2	REV__nc|ENSG00000164418|Q13002-3|GRIK2	MULTI-MSMS	OvCa9_classI_Rep3	3	556.322509765625	2	556.323525	1110.6325	0.84512	0.00047016	-0.93378	-0.00051948	-0.088662	-4.9325E-05	556.3228767199973	126.67	1.4636	125.6	125.28	126.75	-1.0715					78	27	5	0	0	0	0.58282	1	9906	9906		44.117	0	1	271850	+		55541	20987	45868	45907	60670	60670					0.08160657314010678
SVGPPHVAL	9	Unmodified	_SVGPPHVAL_					0	0	0			REV__nc|ENSG00000173638|P41440-2|SLC19A1	REV__nc|ENSG00000173638|P41440-2|SLC19A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	438.238037109375	2	438.750527	875.486502	1.484	0.00065111	-1.7584	-0.00077151	-0.27442	-0.0001204	438.7497229721372	72.042	0.41376	72.042	71.835	72.249	0					15	9	2	0	0	0	0.027408	1	7022	7022		38.806	10.924	1	311520	+		55542	21793	45869	45908	60671	60671					0.04377819588614784
SVGRELARV	9	Unmodified	_SVGRELARV_					0	0	0		tr|A0A7D6VPE5|A0A7D6VPE5_9CLOTDNAtopoisomerase3OS=ClostridiumintestinaleOX=36845GN=topBPE=3SV=1	tr|A0A7D6VPE5|A0A7D6VPE5_9CLOTDNAtopoisomerase3OS=ClostridiumintestinaleOX=36845GN=topBPE=3SV=1	tr|A0A7D6VPE5|A0A7D6VPE5_9CLOTDNAtopoisomerase3OS=ClostridiumintestinaleOX=36845GN=topBPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	493.7933044433594	2	493.790715	985.566878	1.3699	0.00067643	3.1035	0.0015325	4.4734	0.0022089	493.7921470637569	148.91	0.68213	148.91	148.72	149.4	0					42	13	4	0	0	0	0.51865	1	17425	17425		40.778	0	1	151760			55543	34765	45870	45909	60672	60672					0.07351680911665426
SVGRSAWPL	9	Unmodified	_SVGRSAWPL_					0	0	0			REV__nc|ENSG00000115828|Q16769-2|QPCT	REV__nc|ENSG00000115828|Q16769-2|QPCT	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.28265380859375	2	486.766709	971.518865	0.19107	9.3005E-05	-3.0443	-0.0014819	-2.8533	-0.0013889	486.7632420963797	83.717	0.2896	81.054	80.877	81.167	-2.6629					8	5	2	0	0	0	0.027462	1	6967	6967		39.253	2.0937	1	18266	+		55544	18272	45871	45910	60673	60673					0.03196606991616591
SVGSLALIFAL	11	Unmodified	_SVGSLALIFAL_					0	0	0			REV__ENSG00000171217|ENST00000367165|CLDN20	REV__ENSG00000171217|ENST00000367165|CLDN20	MULTI-SECPEP	OvCa9_classI_Rep2	2	546.3392944335938	2	545.828975	1089.6434	0.077527	4.2316E-05	-0.42057	-0.00022956	-0.34304	-0.00018724	545.8286091245416	123.83	1.2803	123.6	123.04	124.32	-0.23193					37	25	2	0	0	0	0.025416	1	12095	12095		26.693	0	1	16448	+		55545	21603	45872	45911	60674	60674					0.10216059688286805
SVGVEKKV	8	Unmodified	_SVGVEKKV_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa99_classI_Rep5	1	423.25830078125	2	423.258185	844.501818	-0.37634	-0.00015929	0.17524	7.4174E-05	-0.20109	-8.5115E-05	423.2581905661982	39.568	1.8175	39.568	39.332	41.149	0					108	40	4	0	0	0	0.27528	2	2351	2321;2351		111.65	15.458	1	10398000	+		55546	28942;32737;28943	45873	45912	60675;60676	60676					0.07334686385809164
SVGVEKKV	8	Unmodified	_SVGVEKKV_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;REV__nc|ENSG00000155657|Q8WZ42-6|TTN	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	423.258185	844.501818	-0.37634	-0.00015929	0.17524	7.4174E-05	-0.20109	-8.5115E-05	423.2581905661982	39.568	1.8175	39.568	39.332	41.149	0	0	0	NaN	111.65	108	40	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10398000	+		55547	28942;32737;28943	45873	45912							0.07334686385809164
SVGVIAYEM	9	Unmodified	_SVGVIAYEM_					0	0	0		nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT;nc|ENSG00000122966|O14578-2|CIT	nc|ENSG00000122966|O14578|CIT	nc|ENSG00000122966|O14578|CIT	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.7415466308594	2	484.741511	967.468469	-0.75057	-0.00036383	0.98295	0.00047648	0.23238	0.00011264	484.7418609663511	70.457	0.53687	66.976	66.738	67.275	-3.4812					26	10	3	0	0	0	0.38529	1	5327	5327		53.351	5.4358	1	326040			55548	3566	45874	45913	60677	60677					-0.016566834484024184
SVGVIAYEM	9	Unmodified	_SVGVIAYEM_					0	0	0		nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT;nc|ENSG00000122966|O14578-2|CIT	nc|ENSG00000122966|O14578|CIT	nc|ENSG00000122966|O14578|CIT	MULTI-MATCH	OvCa9_classI_Rep2	2		2	484.741511	967.468469	-0.38915	-0.00018864	0.30887	0.00014972	-0.080278	-3.8914E-05	484.7414632109744	69.657	0.64679	67.081	66.66	67.307	-2.5753	0.052867	-0.00024098	NaN	53.351	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58174			55549	3566	45874	45913							-0.016566834484024184
SVGVSDKFW	9	Unmodified	_SVGVSDKFW_					0	0	0			REV__ENST00000529871.1_1_11:104897559-104905036:-|nuORF	REV__ENST00000529871.1_1_11:104897559-104905036:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.3126220703125	2	512.758549	1023.50255	-0.98794	-0.00050658	0.18735	9.6067E-05	-0.80059	-0.00041051	512.7586477776592	104.48	0.93886	104.48	104.15	105.09	0					31	21	2	0	0	0	0.027343	1	11782	11782		49.442	0	1	384650	+		55550	19471	45875	45914	60678	60678					-0.008265189651410765
SVHALDIL	8	Unmodified	_SVHALDIL_					0	0	0			REV__ENST00000564281.5_1_16:89680092-89704100:+|nuORF	REV__ENST00000564281.5_1_16:89680092-89704100:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	435.2271728515625	2	434.25036	866.486168	3.3299	0.001446	-0.36573	-0.00015882	2.9642	0.0012872	434.2502231130973	87.86	0.41729	87.86	87.754	88.171	0					12	9	2	0	0	0	0.028476	1	9324	9324		35.201	1.6851	1	247380	+		55551	16517	45876	45915	60679	60679					0.04758399868762808
SVHEMDTLQ	9	Unmodified	_SVHEMDTLQ_					0	0	0			REV__ENSG00000103335|ENST00000301015|PIEZO1	REV__ENSG00000103335|ENST00000301015|PIEZO1	MULTI-SECPEP	OvCa9_classI_Rep2	2	530.809814453125	2	530.242406	1058.47026	0.46498	0.00024655	-2.2679	-0.0012026	-1.803	-0.00095601	530.2411692309053	128.74	1.0399	128.51	128.13	129.17	-0.22697					38	20	3	0	0	0	0.027462	1	12583	12583		49.442	15.269	1	52831	+		55552	17612	45877	45916	60680	60680					-0.05663674430456922
SVHEMDTLQ	9	Unmodified	_SVHEMDTLQ_					0	0	0			REV__ENSG00000103335|ENST00000301015|PIEZO1	REV__ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	530.242406	1058.47026	0.5771	0.000306	-2.4908	-0.0013207	-1.9137	-0.0010147	530.241172913557	129.48	0.64302	128.36	128.14	128.78	-1.1121	-0.050715	7.0231E-05	NaN	49.442	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46436	+		55553	17612	45877	45916							-0.05663674430456922
SVHKGFAFV	9	Unmodified	_SVHKGFAFV_					0	0	0		nc|ENSG00000092199|P07910-4|HNRNPC;ENSG00000092199|ENST00000553300|HNRNPC;nc|ENSG00000092199|P07910|HNRNPC;ENSG00000277058|ENST00000617807|HNRNPCL3;ENSG00000275774|ENST00000621994|HNRNPCL2;ENSG00000179412|ENST00000323770|HNRNPCL4;ENSG00000179172|ENST00000317869|HNRNPCL1;ENST00000556181.1_1_14:58987979-58988105:+|nuORF	nc|ENSG00000092199|P07910-4|HNRNPC	nc|ENSG00000092199|P07910-4|HNRNPC	MULTI-MSMS	OvCa9_classI_Rep2	2	496.2713317871094	2	496.271627	990.528701	0.34464	0.00017103	-0.75422	-0.0003743	-0.40959	-0.00020327	496.2711728280874	72.176	2.3532	69.669	69.277	71.631	-2.5071					78	44	4	0	0	0	0.35444	1	5845	5845		56.721	12.344	1	799860			55554	1889	45878	45917	60681	60681					0.03305794997004341
SVHKVTIKI	9	Unmodified	_SVHKVTIKI_					0	0	0		ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	MULTI-MSMS	OvCa99_classI_Rep5	1	512.8312377929688	2	512.829309	1023.64407	-0.91019	-0.00046677	0.64694	0.00033177	-0.26325	-0.000135	512.8295009865951	49.705	0.9138	49.705	49.462	50.376	0					43	20	4	0	0	0	0.2077	1	3722	3722		75.043	25.602	1	1958900			55555	7859	45879	45918	60682	60682					0.13318899127989425
SVHPLQTPL	9	Unmodified	_SVHPLQTPL_					0	0	0			REV__nc|ENSG00000096080|Q9NVS2-2|MRPS18A	REV__nc|ENSG00000096080|Q9NVS2-2|MRPS18A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.2548522949219	2	496.282192	990.549831	-0.2458	-0.00012199	0.41003	0.00020349	0.16424	8.1507E-05	496.282377953821	77.57	0.7757	74.753	74.536	75.312	-2.8165					33	15	3	0	0	0	0.027433	1	6201	6201		37.812	7.4938	1	107040	+		55556	28762	45880	45919	60683	60683					0.054177603058633395
SVHPLQTPL	9	Unmodified	_SVHPLQTPL_					0	0	0			REV__nc|ENSG00000096080|Q9NVS2-2|MRPS18A	REV__nc|ENSG00000096080|Q9NVS2-2|MRPS18A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	496.282192	990.549831	-0.9718	-0.00048229	0.88325	0.00043834	-0.08855	-4.3946E-05	496.2824556781097	76.798	1.0982	74.427	74.085	75.184	-2.3715	-0.1923	0.00014677	NaN	37.812	37	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	145720	+		55557	28762	45880	45919							0.054177603058633395
SVHVPVSSP	9	Unmodified	_SVHVPVSSP_					0	0	0		ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	MULTI-SECPEP	OvCa9_classI_Rep4_	4	455.28009033203125	2	454.745442	907.476331	1.0914	0.0004963	-0.94614	-0.00043025	0.14525	6.605E-05	454.74472709290467	89.7	1.4615	87.125	86.801	88.262	-2.575					58	28	3	0	0	0	0.027426	1	7700	7700		44.117	0	1	192580			55558	7871	45881	45920	60684	60684					0.018892118633857535
SVHVPVSSP	9	Unmodified	_SVHVPVSSP_					0	0	0		ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	MULTI-MATCH	OvCa9_classI_Rep2	2		2	454.745442	907.476331	3.1851	0.0014484	-2.9902	-0.0013598	0.19484	8.8601E-05	454.74388701867014	88.524	1.4297	87.157	86.789	88.219	-1.3676	0.050984	-0.0015546	NaN	42.396	59	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95847			55559	7871	45881	45920							0.018892118633857535
SVHVPVSSP	9	Unmodified	_SVHVPVSSP_					0	0	0		ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	ENSG00000180357|ENST00000326648|ZNF609	MULTI-MATCH	OvCa9_classI_Rep3	3		2	454.745442	907.476331	-0.3755	-0.00017076	0.44369	0.00020177	0.068191	3.101E-05	454.74544435555214	89.166	1.2482	87.035	86.654	87.902	-2.1309	-0.07047	0.0015686	NaN	42.396	48	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156800			55560	7871	45881	45920							0.018892118633857535
SVIEQIVYV	9	Unmodified	_SVIEQIVYV_					0	0	0		nc|ENSG00000077150|Q00653-4|NFKB2;ENSG00000077150|ENST00000661543|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	nc|ENSG00000077150|Q00653-4|NFKB2	MULTI-MSMS	OvCa99_classI_Rep5	1	525.2969360351562	2	525.297507	1048.58046	1.232	0.00064717	-0.20924	-0.00010991	1.0228	0.00053726	525.2973751682034	133.25	0.5453	133.25	132.99	133.53	0					17	11	2	0	0	0	0.27001	1	15490	15490		66.429	0	1	164490			55561	1565	45882	45921	60685	60685					0.05811493900228015
SVIERELN	8	Unmodified	_SVIERELN_					0	0	0			REV__ENSG00000118492|ENST00000397944|ADGB	REV__ENSG00000118492|ENST00000397944|ADGB	MULTI-SECPEP	OvCa9_classI_Rep2	2	480.27301025390625	2	480.261456	958.50836	0.085126	4.0883E-05	-0.38298	-0.00018393	-0.29785	-0.00014305	480.2613530148666	79.905	1.6087	78.21	77.61	79.218	-1.6951					56	31	3	0	0	0	0.028476	1	6665	6665		27.882	1.1893	1	72764	+		55562	18400	45883	45922	60686	60686					0.02744579546526893
SVIHFPLL	8	Unmodified	_SVIHFPLL_					0	0	0			REV__ENST00000377705.5_1_1:6585921-6586796:-|nuORF	REV__ENST00000377705.5_1_1:6585921-6586796:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.7239685058594	2	463.278921	924.543289	-1.5833	-0.00073349	-2.0379	-0.00094412	-3.6212	-0.0016776	463.27651789968013	50.627	1.0716	47.453	47.153	48.224	-3.1734					56	20	4	0	0	0	0.028476	1	2996	2996		65.897	8.0862	1	81656	+		55563	25125	45884	45923	60687	60687					0.0779986714513825
SVIHQFKI	8	Unmodified	_SVIHQFKI_					0	0	0			REV__ENSG00000170209|ENST00000303941|ANKK1	REV__ENSG00000170209|ENST00000303941|ANKK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.2898254394531	2	486.287277	970.560001	1.0523	0.00051172	3.0735	0.0014946	4.1258	0.0020063	486.2884483834136	96.773	2.621	94.348	93.609	96.23	-2.4256					142	51	5	0	0	0	0.59148	1	8594	8594		65.803	0	1	3468200	+		55564	21521	45885	45924	60688	60688					0.0735436803107632
SVIIFQILVY	10	Unmodified	_SVIIFQILVY_					0	0	0		tr|A0A553SSP4|A0A553SSP4_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_03520PE=4SV=1	tr|A0A553SSP4|A0A553SSP4_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_03520PE=4SV=1	tr|A0A553SSP4|A0A553SSP4_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_03520PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8560791015625	2	597.860275	1193.706	-3.1765	-0.0018991	-3.3266	-0.0019889	-6.5032	-0.003888	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.73378	1	15008	15008		26.693	5.0072	1	436470			55565	34399	45886	45925	60689	60689					0.11689205756465526
SVIIGRPPVK	10	Unmodified	_SVIIGRPPVK_					0	0	0			REV__ENSG00000103642|ENST00000261893|LACTB	REV__ENSG00000103642|ENST00000261893|LACTB	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.2799682617188	2	533.342584	1064.67061	0.49911	0.0002662	-4.4816	-0.0023902	-3.9824	-0.002124	533.3400320401221	161.43	1.4191	161.43	160.91	162.33	0					78	27	5	0	0	0	0.027174	1	18994	18994		20.947	0	1	777360	+		55566	17628	45887	45926	60690	60690					0.1408658801931324
SVIIVWSK	8	Unmodified	_SVIIVWSK_					0	0	0			REV__tr|A0A553SL33|A0A553SL33_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_19875PE=4SV=1	REV__tr|A0A553SL33|A0A553SL33_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_19875PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	466.2818298339844	2	466.284203	930.553853	-2.6151	-0.0012194	-2.1764	-0.0010148	-4.7916	-0.0022342	466.2831375283496	36.825	2.2186	34.116	33.893	36.112	-2.7097					109	44	4	0	0	0	0.27528	3	1642	1642;1648;1654		111.65	29.408	1	2007800	+		55567	30180	45888	45927	60691;60692;60693	60691					0.08579849799559724
SVIKERIP	8	Unmodified	_SVIKERIP_					0	0	0		nc|ENSG00000126733|Q96NX9-3|DACH2;nc|ENSG00000126733|Q96NX9-4|DACH2;nc|ENSG00000126733|Q96NX9-2|DACH2;ENSG00000126733|ENST00000373125|DACH2	nc|ENSG00000126733|Q96NX9-3|DACH2	nc|ENSG00000126733|Q96NX9-3|DACH2	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.2841491699219	2	471.292559	940.570566	0.346	0.00016307	1.8973	0.00089418	2.2433	0.0010572	471.29328027126235	101.59	0.2934	101.59	101.44	101.73	0					11	6	2	0	0	0	0.028476	1	11285	11285		57.811	15.415	1	85115			55568	3794	45889	45928	60694	60694					0.09790350685523208
SVIKERIP	8	Unmodified	_SVIKERIP_					0	0	0		nc|ENSG00000126733|Q96NX9-3|DACH2;nc|ENSG00000126733|Q96NX9-4|DACH2;nc|ENSG00000126733|Q96NX9-2|DACH2;ENSG00000126733|ENST00000373125|DACH2	nc|ENSG00000126733|Q96NX9-3|DACH2	nc|ENSG00000126733|Q96NX9-3|DACH2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	471.292559	940.570566	0.26027	0.00012266	0.028573	1.3466E-05	0.28884	0.00013613	471.29235468849095	103.52	0.52097	101.4	101.17	101.69	-2.1192	-0.093196	-0.0006721	NaN	82.305	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22687			55569	3794	45889	45928							0.09790350685523208
SVIKQTVVF	9	Unmodified	_SVIKQTVVF_					0	0	0		tr|A0A7D6W3T8|A0A7D6W3T8_9CLOT4-hydroxy-tetrahydrodipicolinatesynthaseOS=ClostridiumintestinaleOX=36845GN=dapAPE=3SV=1	tr|A0A7D6W3T8|A0A7D6W3T8_9CLOT4-hydroxy-tetrahydrodipicolinatesynthaseOS=ClostridiumintestinaleOX=36845GN=dapAPE=3SV=1	tr|A0A7D6W3T8|A0A7D6W3T8_9CLOT4-hydroxy-tetrahydrodipicolinatesynthaseOS=ClostridiumintestinaleOX=36845GN=dapAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.2966613769531	2	510.808042	1019.60153	-1.105	-0.00056445	-0.78893	-0.00040299	-1.8939	-0.00096744	510.8073955076406	100.52	1.4868	99.69	99.36	100.85	-0.83051					61	29	3	0	0	0	0.027462	1	9157	9157		40.778	7.9657	1	76995			55570	35461	45890	45929	60695	60695					0.09251503999757915
SVIMGCKS	8	Unmodified	_SVIMGCKS_					0	0	0		ENSG00000196344|ENST00000437033|ADH7;nc|ENSG00000196344|P40394|ADH7;nc|ENSG00000196344|P40394-2|ADH7	ENSG00000196344|ENST00000437033|ADH7	ENSG00000196344|ENST00000437033|ADH7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	412.7347717285156	2	412.703874	823.393195	1.4572	0.00060137	-1.0046	-0.00041462	0.45252	0.00018676	412.7033134232794	36.739	1.646	33.847	33.195	34.841	-2.8925					42	32	2	0	0	0	0.028476	1	1319	1319		35.618	5.1146	1	20372			55571	8592	45891	45930	60696	60696					-0.02556564180474652
SVIRGEAFT	9	Unmodified	_SVIRGEAFT_					0	0	0		CON__ENSEMBL:ENSBTAP00000024146;ENSG00000175899|ENST00000318602|A2M	CON__ENSEMBL:ENSBTAP00000024146;ENSG00000175899|ENST00000318602|A2M	ENSG00000175899|ENST00000318602|A2M	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.2269592285156	2	490.263999	978.513445	-0.50216	-0.00024619	-1.4311	-0.00070162	-1.9333	-0.00094781	490.2625241172146	33.472	0.39521	33.472	33.285	33.681	0					10	7	2	0	0	0	0.027462	1	1549	1549		42.396	22.399	1	34076		+	55572	606;7570	45892	45931	60697	60697					0.023328834091330464
SVIRKGGK	8	Unmodified	_SVIRKGGK_					0	0	0		tr|A0A553SSQ5|A0A553SSQ5_NIACITyrosinerecombinaseXerSOS=NialliacirculansOX=1397GN=xerSPE=4SV=1	tr|A0A553SSQ5|A0A553SSQ5_NIACITyrosinerecombinaseXerSOS=NialliacirculansOX=1397GN=xerSPE=4SV=1	tr|A0A553SSQ5|A0A553SSQ5_NIACITyrosinerecombinaseXerSOS=NialliacirculansOX=1397GN=xerSPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	422.77191162109375	2	422.771794	843.529036	0.17861	7.5512E-05	-0.040801	-1.725E-05	0.13781	5.8263E-05	422.77160100251916	22.295	0.20302	22.295	22.228	22.431	0					6	4	2	0	0	0	0.73136	1	198	198		8.2313	0	1	21394			55573	34402	45893	45932	60698	60698					0.1010121471686034
SVIRRDKR	8	Unmodified	_SVIRRDKR_					0	0	0			REV__ENST00000463226.1_1_3:113321250-113327360:+|nuORF	REV__ENST00000463226.1_1_3:113321250-113327360:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.294189453125	2	515.317432	1028.62031	-0.11861	-6.1123E-05	-2.337	-0.0012043	-2.4556	-0.0012654	515.3162705294611	32.772	0.19325	32.772	32.651	32.844	0					6	3	2	0	0	0	0.028476	1	1445	1445		16.473	5.6076	1	28584	+		55574	16926	45894	45933	60699	60699					0.10714478414161022
SVISAISGQL	10	Unmodified	_SVISAISGQL_					0	0	0		RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.T5031Rfs*29|1|0.06|ENSG00000173821|chr17:80389261-80389262|-/TCGG|frameshift_variant;RNF213|p.G5057Vfs*8|1|0.18|ENSG00000173821|chr17:80389340-80389340|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF;ENST00000560083.1_1_17:78362921-78367295:+|nuORF	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	487.7798767089844	2	487.779482	973.544411	-1.3439	-0.00065552	0.71694	0.00034971	-0.62695	-0.00030581	487.7797264979424	43.975	0.83809	43.975	43.78	44.618	0					38	18	4	0	0	0	0.28422	1	2936	2936		82.75	10.873	1	3078600			55575	7416	45895	45934	60700	60700					0.056580367233777906
SVITQVFHV	9	Unmodified	_SVITQVFHV_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OvCa99_classI_Rep5	1	515.7911376953125	2	515.290017	1028.56548	0.87046	0.00044854	-0.18612	-9.5904E-05	0.68435	0.00035264	515.2904011447545	115.04	0.79457	115.04	114.74	115.54	0					49	16	4	0	0	0	0.1149	2	13139	13127;13139		93.143	31.036	1	548050			55576	3119	45896	45935	60701;60702	60702					0.05234046822897653
SVITQVFHV	9	Unmodified	_SVITQVFHV_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.2889404296875	2	515.290017	1028.56548	-0.2135	-0.00011002	0.10475	5.3978E-05	-0.10875	-5.6039E-05	515.2894440360037	116.46	1.7212	115.1	114.1	115.82	-1.3645					46	33	2	0	0	0	0.3076	1	10864	10864		62.107	20.681	1	89394			55577	3119	45896	45935	60703	60703					0.05234046822897653
SVITQVFHV	9	Unmodified	_SVITQVFHV_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.290017	1028.56548	-0.26609	-0.00013711	0.66153	0.00034088	0.39545	0.00020377	515.2897707215024	115.2	1.0862	115.08	114.65	115.74	-0.11777	0.01013	0.0005052	NaN	93.143	51	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73602			55578	3119	45896	45935							0.05234046822897653
SVIVIRSLV	9	Unmodified	_SVIVIRSLV_					0	0	0		nc|ENSG00000132849|Q8NI35|PATJ;ENSG00000132849|ENST00000642238|PATJ;nc|ENSG00000132849|Q8NI35-5|PATJ;nc|ENSG00000132849|Q8NI35-4|PATJ;ENST00000459752.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-3|PATJ;ENST00000484562.5_1_1:62228564-62579919:+|nuORF;nc|ENSG00000132849|Q8NI35-2|PATJ;INADL-EIF3E|1|fusion	nc|ENSG00000132849|Q8NI35|PATJ;INADL-EIF3E|1|fusion	INADL-EIF3E|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	493.3241271972656	2	493.32386	984.633166	0.32462	0.00016014	-0.47453	-0.0002341	-0.14991	-7.3954E-05	493.3234613432452	114.6	1.4806	114.48	114.16	115.64	-0.11777					70	29	3	0	0	0	0.5811	1	10927	10927		34.173	0	1	205500			55579	4180;14505	45897	45936	60704	60704					0.14023496753702602
SVIYYFDM	8	Unmodified	_SVIYYFDM_					0	0	0		tr|A0A553SUK7|A0A553SUK7_NIACIRodshape-determiningproteinRodAOS=NialliacirculansOX=1397GN=CEQ21_01370PE=4SV=1	tr|A0A553SUK7|A0A553SUK7_NIACIRodshape-determiningproteinRodAOS=NialliacirculansOX=1397GN=CEQ21_01370PE=4SV=1	tr|A0A553SUK7|A0A553SUK7_NIACIRodshape-determiningproteinRodAOS=NialliacirculansOX=1397GN=CEQ21_01370PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.332763671875	2	519.236061	1036.45757	-0.11989	-6.2249E-05	4.0552	0.0021056	3.9353	0.0020433	519.2379451738635	77.462	1.2008	75.673	75.051	76.251	-1.7894					47	22	3	0	0	0	0.028476	1	6372	6372		19.36	0	1	44783			55580	34618	45898	45937	60705	60705					-0.05920085822708643
SVKGKLLSGTQ	11	Unmodified	_SVKGKLLSGTQ_					0	0	0			REV__nc|nan|Q8N4C9-2|C17orf78	REV__nc|nan|Q8N4C9-2|C17orf78	MULTI-MSMS	OvCa9_classI_Rep3	3	559.3355102539062	2	559.332413	1116.65027	0.059927	3.3519E-05	2.2701	0.0012697	2.33	0.0013032	559.3337743770333	105.67	2.6036	104.33	103.89	106.49	-1.3482					139	50	4	0	0	0	0.22834	1	7421	7421		76.17	0	1	6929000	+		55581	29240	45899	45938	60706	60706					0.09661372568871229
SVKGSKEVDL	10	Unmodified	_SVKGSKEVDL_					0	0	0			REV__ENSG00000023892|ENST00000316637|DEF6	REV__ENSG00000023892|ENST00000316637|DEF6	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.2835693359375	2	531.295496	1060.57644	1.3839	0.00073528	1.0456	0.00055552	2.4295	0.0012908	531.2960151131725	80.942	0.67299	80.942	80.615	81.288	0					21	15	2	0	0	0	0.026681	1	8344	8344		36.447	0	1	461490	+		55582	16562	45900	45939	60707	60707					0.0485740440653899
SVKIKPVFVE	10	Unmodified	_SVKIKPVFVE_					0	0	0		tr|A0A553SST5|A0A553SST5_NIACILXGdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03750PE=3SV=1	tr|A0A553SST5|A0A553SST5_NIACILXGdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03750PE=3SV=1	tr|A0A553SST5|A0A553SST5_NIACILXGdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03750PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	573.854736328125	2	573.350074	1144.6856	0.21495	0.00012324	3.1575	0.0018103	3.3724	0.0019336	573.3517000735841	164.39	1.2433	164.39	163.8	165.04	0					56	46	2	0	0	0	0.81208	1	19164	19164		17.468	0.10304	1	24380			55583	34416	45901	45940	60708	60708					0.11904035096654297
SVKILPKRG	9	Unmodified	_SVKILPKRG_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.K1327Rfs*8|1|0.05|ENSG00000065526|chr1:15930219-15930220|-/G|frameshift_variant;SPEN|p.L1328Vfs*10|1|0.05|ENSG00000065526|chr1:15930221-15930222|-/GTCCAATCAAAAAAGCC|frameshift_variant;SPEN|p.S920Wfs*24|1|0.06|ENSG00000065526|chr1:15928998-15928999|-/GGTCTCAAATTCCTGAC|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.9026184082031	2	499.329476	996.6444	0.24555	0.00012261	-0.54795	-0.00027361	-0.30239	-0.00015099	499.32912926236133	70.38	0.65091	67.66	67.306	67.957	-2.7196					16	12	2	0	0	0	0.027462	1	3164	3164		10.265	0	1	22914			55584	1329	45902	45941	60709	60709					0.14594318847855448
SVKKEQKV	8	Unmodified	_SVKKEQKV_					0	0	0		nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-5|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	474.256591796875	2	473.290017	944.565481	0.4265	0.00020186	-1.6102	-0.0007621	-1.1837	-0.00056024	473.2893518237837	62.554	1.3113	59.096	58.429	59.74	-3.4577					59	26	3	0	0	0	0.028476	1	4271	4271		17.365	0	1	116970			55585	4667	45903	45942	60710	60710					0.09098046822896322
SVKKEQKV	8	Unmodified	_SVKKEQKV_					0	0	0		nc|ENSG00000138182|Q96Q89-3|KIF20B;ENSG00000138182|ENST00000371728|KIF20B;nc|ENSG00000138182|Q96Q89-2|KIF20B;nc|ENSG00000138182|Q96Q89-5|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	nc|ENSG00000138182|Q96Q89-3|KIF20B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	473.290017	944.565481	-1.4678	-0.00069472	0.7433	0.0003518	-0.72455	-0.00034292	473.29042122356736	61.597	1.2705	58.838	58.361	59.631	-2.7593	-0.12936	0.001	NaN	11.511	42	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104160			55586	4667	45903	45942							0.09098046822896322
SVKKLKALV	9	Unmodified	_SVKKLKALV_					0	0	0			REV__tr|A0A553SHX5|A0A553SHX5_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13760PE=4SV=1	REV__tr|A0A553SHX5|A0A553SHX5_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13760PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3178405761719	2	493.342052	984.669552	0.11534	5.69E-05	-0.61421	-0.00030302	-0.49888	-0.00024612	493.34081819108883	104.43	0.41548	102.99	102.76	103.18	-1.4347					12	7	2	0	0	0	0.027462	1	7258	7258		34.173	9.9698	1	30131	+		55587	29849	45904	45943	60711	60711					0.17660373650403471
SVKKSKIF	8	Unmodified	_SVKKSKIF_					0	0	0		tr|A0A553SR10|A0A553SR10_NIACIPolyphosphatekinaseOS=NialliacirculansOX=1397GN=ppkPE=3SV=1	tr|A0A553SR10|A0A553SR10_NIACIPolyphosphatekinaseOS=NialliacirculansOX=1397GN=ppkPE=3SV=1	tr|A0A553SR10|A0A553SR10_NIACIPolyphosphatekinaseOS=NialliacirculansOX=1397GN=ppkPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	469.2532958984375	2	468.797478	935.580402	-1.7116	-0.0008024	1.5355	0.00071982	-0.17615	-8.258E-05	468.7981000805029	85.119	1.4327	83.573	83.104	84.536	-1.5462					47	28	2	0	0	0	0.028476	1	7455	7455		25.45	2.4077	1	77159			55588	34217	45905	45944	60712	60712					0.11003538690897585
SVKKSTSA	8	Unmodified	_SVKKSTSA_					0	0	0		tr|A0A553SPL6|A0A553SPL6_NIACIPeptidaseOS=NialliacirculansOX=1397GN=CEQ21_26650PE=3SV=1	tr|A0A553SPL6|A0A553SPL6_NIACIPeptidaseOS=NialliacirculansOX=1397GN=CEQ21_26650PE=3SV=1	tr|A0A553SPL6|A0A553SPL6_NIACIPeptidaseOS=NialliacirculansOX=1397GN=CEQ21_26650PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	404.23284912109375	2	404.232168	806.449782	1.4985	0.00060574	0.40137	0.00016225	1.8999	0.00076799	404.2322157005619	134.25	0.93222	134.02	133.46	134.39	-0.22697					47	18	3	0	0	0	0.75208	1	13277	13277		17.365	0	1	139150			55589	34059	45906	45945	60713	60713					0.038815229720512434
SVKNIVCEEL	10	Unmodified	_SVKNIVCEEL_					0	0	0			REV__nc|ENSG00000143952|Q9P1Q0-3|VPS54	REV__nc|ENSG00000143952|Q9P1Q0-3|VPS54	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.296142578125	2	567.297181	1132.57981	2.5275	0.0014339	-2.0987	-0.0011906	0.42887	0.0002433	567.2957813300864	129.76	1.238	128.31	127.94	129.18	-1.4565					74	24	4	0	0	0	0.55109	1	12467	12467		47.96	9.1534	1	391040	+		55590	28903	45907	45946	60714	60714					0.018823311888581884
SVKTITNPF	9	Unmodified	_SVKTITNPF_					0	0	0		tr|A0A553SS03|A0A553SS03_NIACIMMPLfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_02030PE=4SV=1	tr|A0A553SS03|A0A553SS03_NIACIMMPLfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_02030PE=4SV=1	tr|A0A553SS03|A0A553SS03_NIACIMMPLfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_02030PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	503.77880859375	2	503.782025	1005.5495	-3.0867	-0.001555	-3.4935	-0.00176	-6.5803	-0.003315	503.78006253314857	36.309	2.2758	33.6	32.75	35.026	-2.7097					126	45	4	0	0	0	0.55588	1	1609	1609		37.159	1.5408	1	296190			55591	34320	45908	45947	60715	60715					0.04694340585979262
SVLCTVLGEPD	11	Unmodified	_SVLCTVLGEPD_					0	0	0		ENST00000523248.1_1_8:17491611-17501178:+|nuORF;ENSG00000104213|ENST00000251630|PDGFRL	ENST00000523248.1_1_8:17491611-17501178:+|nuORF	ENST00000523248.1_1_8:17491611-17501178:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	566.8154907226562	2	566.781364	1131.54818	-0.35883	-0.00020338	-0.6394	-0.0003624	-0.99822	-0.00056577	567.2807438571072	109.8	0.262	108.66	108.45	108.72	-1.1444					6	4	2	0	0	0	0.025528	1	7888	7888		35.152	0.97948	1	3837.9			55592	2358	45909	45948	60716	60716					-0.012336615650838212
SVLETSPDIL	10	Unmodified	_SVLETSPDIL_					0	0	0		ENSG00000119514|ENST00000375011|GALNT12	ENSG00000119514|ENST00000375011|GALNT12	ENSG00000119514|ENST00000375011|GALNT12	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.2916870117188	2	537.289879	1072.56521	2.0589	0.0011063	-1.639	-0.00088063	0.41992	0.00022562	537.2887813646154	130.6	0.93359	129.12	128.81	129.74	-1.4779					35	18	3	0	0	0	0.46756	1	12530	12530		58.782	5.8453	1	65015			55593	3368	45910	45949	60717	60717					0.03182582312388149
SVLETSPDIL	10	Unmodified	_SVLETSPDIL_					0	0	0		ENSG00000119514|ENST00000375011|GALNT12	ENSG00000119514|ENST00000375011|GALNT12	ENSG00000119514|ENST00000375011|GALNT12	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	537.289879	1072.56521	0.23063	0.00012392	0.49007	0.00026331	0.7207	0.00038722	537.2899516417791	129.48	0.78999	129.25	128.92	129.71	-0.22696	0.072613	0.0010114	NaN	58.782	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48791			55594	3368	45910	45949							0.03182582312388149
SVLETSPDIL	10	Unmodified	_SVLETSPDIL_					0	0	0		ENSG00000119514|ENST00000375011|GALNT12	ENSG00000119514|ENST00000375011|GALNT12	ENSG00000119514|ENST00000375011|GALNT12	MULTI-MATCH	OvCa9_classI_Rep3	3		2	537.289879	1072.56521	1.5451	0.00083017	-1.3488	-0.0007247	0.19628	0.00010546	537.2888101784282	130.28	0.88988	129.16	128.93	129.82	-1.1121	-0.014557	-0.00096462	NaN	58.782	30	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43286			55595	3368	45910	45949							0.03182582312388149
SVLEVLDMSQ	10	Unmodified	_SVLEVLDMSQ_					0	0	0			REV__chrX:149483214-149486925|325|16.89|0.0|20.69|-|1|None,IDS|2	REV__chrX:149483214-149486925|325|16.89|0.0|20.69|-|1|None,IDS|2	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.7667846679688	2	560.781364	1119.54818	1.8547	0.0010401	2.0387	0.0011433	3.8934	0.0021834	560.7824207765448	79.027	0.40629	79.027	78.869	79.276	0					13	9	2	0	0	0	0.026849	1	8053	8053		25.574	0	1	409180	+		55596	16133	45911	45950	60718	60718					-0.006816615650905078
SVLFFISGIK	10	Unmodified	_SVLFFISGIK_					0	0	0		chr10:133400890-133401529|110|10.84|0.0|20.05|+|2|TE_info:L1MB3,L1MB3_dup10751,L1,LINE,donor,-,133400616,133400890|None,MTG1|1	chr10:133400890-133401529|110|10.84|0.0|20.05|+|2|TE_info:L1MB3,L1MB3_dup10751,L1,LINE,donor,-,133400616,133400890|None,MTG1|1	chr10:133400890-133401529|110|10.84|0.0|20.05|+|2|TE_info:L1MB3,L1MB3_dup10751,L1,LINE,donor,-,133400616,133400890|None,MTG1|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.7736206054688	2	555.831517	1109.64848	1.2215	0.00067897	4.2782	0.0023779	5.4997	0.0030569	555.8337302674094	97.531	0.81609	95.152	94.859	95.675	-2.3786					24	15	2	0	0	0	0.026782	1	8664	8664		45.972	0	1	29909			55597	270	45912	45951	60719	60719					0.09804363550870221
SVLGKIWKL	9	Unmodified	_SVLGKIWKL_					0	0	0		ENSG00000013016|ENST00000322054|EHD3;ENSG00000103966|ENST00000220325|EHD4	ENSG00000013016|ENST00000322054|EHD3;ENSG00000103966|ENST00000220325|EHD4	ENSG00000013016|ENST00000322054|EHD3	MULTI-MSMS	OvCa99_classI_Rep5	1	522.3353881835938	2	522.334227	1042.6539	1.4272	0.00074545	0.89025	0.00046501	2.3174	0.0012105	522.33457819685	101.17	0.83651	101.17	100.9	101.73	0					52	19	3	0	0	0	0.055627	1	11233	11233		115.49	33.189	1	2305600			55598	979;2345	45913	45952	60720	60720					0.13428087133365807
SVLHIGRLQIF	11	Unmodified	_SVLHIGRLQIF_					0	0	0		ENST00000418945.1_1_6:99873388-99873496:+|nuORF	ENST00000418945.1_1_6:99873388-99873496:+|nuORF	ENST00000418945.1_1_6:99873388-99873496:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	641.88232421875	2	641.885147	1281.75574	-4.0037	-0.0025699	-0.45506	-0.00029209	-4.4587	-0.002862	642.3862707583961	149.94	3.9275	149.71	147.52	151.45	-0.22696					225	78	5	0	0	0	0.72466	1	15255	15255		19.997	1.7347	1	222110			55599	11648	45914	45953	60721	60721					0.12613333485114708
SVLIREGLT	9	Unmodified	_SVLIREGLT_					0	0	0		ENSG00000119401|ENST00000450136|TRIM32	ENSG00000119401|ENST00000450136|TRIM32	ENSG00000119401|ENST00000450136|TRIM32	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.3249206542969	2	494.295299	986.576045	0.20794	0.00010279	3.1773	0.0015705	3.3852	0.0016733	494.2968004055068	114.74	1.5293	114.63	113.91	115.44	-0.11777					69	30	3	0	0	0	0.027425	1	10907	10907		60.118	5.3419	1	84905			55600	3359	45915	45954	60722	60722					0.08222029477315118
SVLKKALEI	9	Unmodified	_SVLKKALEI_					0	0	0		ENSG00000166946|ENST00000300213|CCNDBP1;ENST00000566515.5_1_15:43486293-43487036:+|nuORF;nc|ENSG00000166946|O95273-3|CCNDBP1;ENST00000569745.5_1_15:43477607-43487036:+|nuORF;ENST00000563065.5_1_15:43477607-43487036:+|nuORF	ENSG00000166946|ENST00000300213|CCNDBP1	ENSG00000166946|ENST00000300213|CCNDBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	500.8252868652344	2	500.823692	999.632832	0.37338	0.000187	-0.31952	-0.00016002	0.053862	2.6975E-05	500.82349848652575	74.043	0.45839	74.043	73.907	74.366	0					25	11	3	0	0	0	0.16264	1	7303	7303		82.75	5.9763	1	2543200			55601	6738	45916	45955	60723	60723					0.13300077033841262
SVLKKALEI	9	Unmodified	_SVLKKALEI_					0	0	0		ENSG00000166946|ENST00000300213|CCNDBP1;ENST00000566515.5_1_15:43486293-43487036:+|nuORF;nc|ENSG00000166946|O95273-3|CCNDBP1;ENST00000569745.5_1_15:43477607-43487036:+|nuORF;ENST00000563065.5_1_15:43477607-43487036:+|nuORF	ENSG00000166946|ENST00000300213|CCNDBP1	ENSG00000166946|ENST00000300213|CCNDBP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	500.823692	999.632832	-1.063	-0.00053237	0.59964	0.00030032	-0.46335	-0.00023206	500.82371891334685	76.015	1.5574	74.161	73.689	75.247	-1.854	0.0035502	0.00032143	NaN	82.75	56	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181320			55602	6738	45916	45955							0.13300077033841262
SVLKKALEI	9	Unmodified	_SVLKKALEI_					0	0	0		ENSG00000166946|ENST00000300213|CCNDBP1;ENST00000566515.5_1_15:43486293-43487036:+|nuORF;nc|ENSG00000166946|O95273-3|CCNDBP1;ENST00000569745.5_1_15:43477607-43487036:+|nuORF;ENST00000563065.5_1_15:43477607-43487036:+|nuORF	ENSG00000166946|ENST00000300213|CCNDBP1	ENSG00000166946|ENST00000300213|CCNDBP1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	500.823692	999.632832	-0.80046	-0.00040089	0.35829	0.00017944	-0.44216	-0.00022145	500.82369727820185	77.085	1.2072	74.268	73.86	75.067	-2.8165	0.11112	7.9685E-05	NaN	82.75	48	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217690			55603	6738	45916	45955							0.13300077033841262
SVLKPTNET	9	Unmodified	_SVLKPTNET_					0	0	0		ENSG00000188582|ENST00000340634|PAQR9	ENSG00000188582|ENST00000340634|PAQR9	ENSG00000188582|ENST00000340634|PAQR9	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2492980957031	2	494.769114	987.523675	-0.24059	-0.00011904	-0.058609	-2.8998E-05	-0.2992	-0.00014804	494.769189874865	58.592	0.61799	58.592	58.194	58.812	0					19	14	2	0	0	0	0.02744	1	4942	4942		29.17	6.5904	1	585630			55604	8480	45917	45956	60724	60724					0.029414463436978622
SVLLEQPRKS	10	Unmodified	_SVLLEQPRKS_					0	0	0		nc|ENSG00000064102|Q9NVM9-2|INTS13;ENSG00000064102|ENST00000261191|INTS13	nc|ENSG00000064102|Q9NVM9-2|INTS13	nc|ENSG00000064102|Q9NVM9-2|INTS13	MULTI-SECPEP	OvCa9_classI_Rep4_	4	578.857421875	2	578.837862	1155.66117	-0.43942	-0.00025435	-1.3551	-0.00078436	-1.7945	-0.0010387	579.3381320838922	75.69	0.9679	72.751	72.207	73.175	-2.9389					42	19	3	0	0	0	0.026843	1	5918	5918		46.457	17.307	1	80100			55605	1293	45918	45957	60725	60725					0.08956774943135315
SVLLFGPESH	10	Unmodified	_SVLLFGPESH_					0	0	0		tr|A0A553SIZ7|A0A553SIZ7_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15800PE=4SV=1	tr|A0A553SIZ7|A0A553SIZ7_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15800PE=4SV=1	tr|A0A553SIZ7|A0A553SIZ7_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15800PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	543.2825927734375	2	543.284931	1084.55531	-0.5586	-0.00030348	-3.4813	-0.0018913	-4.0399	-0.0021948	543.2829294742079	33.708	0.53352	33.708	33.483	34.017	0					22	10	3	0	0	0	0.53885	1	1565	1565		49.442	8.8689	1	651580			55606	33445	45919	45958	60726	60726					0.0164143909764789
SVLLPRVL	8	Unmodified	_SVLLPRVL_					0	0	0			REV__ENST00000488141.5_1_22:37887199-37892645:-|nuORF	REV__ENST00000488141.5_1_22:37887199-37892645:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	448.8001708984375	2	448.80002	895.585488	0.73618	0.0003304	-0.70585	-0.00031678	0.030333	1.3614E-05	448.7995819385941	119.43	1.6759	118.4	117.98	119.66	-1.0271					86	33	4	0	0	0	0.50674	1	9089	9089		76.847	0	1	762460	+		55607	17359	45920	45959	60727	60727					0.1335184255351578
SVLLWVLN	8	Unmodified	_SVLLWVLN_					0	0	0		ENST00000587491.5_1_17:75206862-75207027:+|nuORF	ENST00000587491.5_1_17:75206862-75207027:+|nuORF	ENST00000587491.5_1_17:75206862-75207027:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.7311096191406	2	472.284203	942.553853	-0.17802	-8.4075E-05	-4.1054	-0.0019389	-4.2834	-0.002023	472.28213167890993	54.456	1.1283	51.208	50.927	52.055	-3.2474					33	21	2	0	0	0	0.028476	1	3441	3441		35.201	0	1	78828			55608	14064	45921	45960	60728	60728					0.08027849799543674
SVLMIPIVF	9	Unmodified	_SVLMIPIVF_					0	0	0		tr|A0A7D7AC06|A0A7D7AC06_9CLOTCobaltECFtransporterTcomponentCbiQOS=ClostridiumintestinaleOX=36845GN=cbiQPE=4SV=1	tr|A0A7D7AC06|A0A7D7AC06_9CLOTCobaltECFtransporterTcomponentCbiQOS=ClostridiumintestinaleOX=36845GN=cbiQPE=4SV=1	tr|A0A7D7AC06|A0A7D7AC06_9CLOTCobaltECFtransporterTcomponentCbiQOS=ClostridiumintestinaleOX=36845GN=cbiQPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	510.7890930175781	2	509.803914	1017.59328	-2.1772	-0.0011099	2.3726	0.0012096	0.19542	9.9625E-05	510.3065091735513	140.31	0.24658	139.28	139.09	139.33	-1.0339					6	4	2	0	0	0	0.027462	1	11531	11531		35.201	0	1	10836			55609	36221	45922	45961	60729	60729					0.08518233758786664
SVLNDDRCA	9	Unmodified	_SVLNDDRCA_					0	0	0			REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	OvCa9_classI_Rep3	3	496.7262268066406	2	496.726923	991.439294	2.0848	0.0010356	-1.8715	-0.00092964	0.21322	0.00010591	496.7256667466894	56.454	1.7894	53.303	52.476	54.265	-3.1504					88	62	2	0	0	0	0.55588	1	1615	1615		37.159	2.9866	1	26855	+		55610	20958	45923	45962	60730	60730					-0.0567682774470768
SVLNDDRCA	9	Unmodified	_SVLNDDRCA_					0	0	0			REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MATCH	OvCa9_classI_Rep2	2		2	496.726923	991.439294	-0.80698	-0.00040085	0.93328	0.00046359	0.12631	6.274E-05	496.72708041990046	56.094	1.784	53.29	52.631	54.415	-2.804	-0.0065177	0.0012459	NaN	37.159	55	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47583	+		55611	20958	45923	45962							-0.0567682774470768
SVLNIALAR	9	Unmodified	_SVLNIALAR_					0	0	0			REV__tr|A0A7D6VTD4|A0A7D6VTD4_9CLOTSDRfamilyoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23145PE=3SV=1	REV__tr|A0A7D6VTD4|A0A7D6VTD4_9CLOTSDRfamilyoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23145PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.7931213378906	2	478.798009	955.581465	-0.084311	-4.0368E-05	-0.10898	-5.2181E-05	-0.19329	-9.2548E-05	478.7978262437849	47.315	0.60766	47.315	47.03	47.638	0					21	13	2	0	0	0	0.027462	1	3408	3408		21.96	0	1	489980	+		55612	31597	45924	45963	60731	60731					0.10189753059785289
SVLNVIMECI	10	Unmodified	_SVLNVIMECI_					0	0	0			REV__nc|ENSG00000124721|Q96JB1-2|DNAH8	REV__nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.7667846679688	2	560.790678	1119.5668	2.0623	0.0011565	2.205	0.0012366	4.2674	0.0023931	560.7917349327438	78.977	0.49216	78.977	78.668	79.16	0					14	11	2	0	0	0	0.026915	1	8053	8053		14.865	0	1	422500	+		55613	18702	45925	45964	60732	60732					0.011801768051100225
SVLRAGYST	9	Unmodified	_SVLRAGYST_					0	0	0			REV__ENST00000510337.1_1_5:122971848-122972142:+|nuORF	REV__ENST00000510337.1_1_5:122971848-122972142:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.24005126953125	2	477.256174	952.497795	-0.022783	-1.0874E-05	0.01733	8.2708E-06	-0.0054536	-2.6028E-06	477.2564127253627	58.592	0.37067	58.592	58.403	58.774	0					17	8	3	0	0	0	0.02744	1	4997	4997		52.937	12.159	1	419550	+		55614	26939	45926	45965	60733	60733					0.019645968920940504
SVLRGTRPH	9	Unmodified	_SVLRGTRPH_					0	0	0			REV__nc|ENSG00000215041|Q96JN8-2|NEURL4	REV__nc|ENSG00000215041|Q96JN8-2|NEURL4	MULTI-MSMS	OvCa9_classI_Rep2	2	511.7964782714844	2	511.796332	1021.57811	-0.62141	-0.00031803	0.39226	0.00020076	-0.22915	-0.00011728	511.7964198016226	39.51	1.1416	36.8	36.459	37.601	-2.7097					55	22	3	0	0	0	0.51865	1	1936	1936		40.778	1.5253	1	203800	+		55615	23309	45927	45966	60734	60734					0.06818503005808907
SVLRPLMTL	9	Unmodified	_SVLRPLMTL_					0	0	0			REV__ENSG00000179240|ENST00000529331|GVQW3	REV__ENSG00000179240|ENST00000529331|GVQW3	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.311767578125	2	515.309895	1028.60524	0.67052	0.00034553	2.3918	0.0012325	3.0623	0.001578	515.3111559710834	35.314	1.6978	32.465	32.19	33.887	-2.849					108	33	5	0	0	0	0.38529	1	1107	1107		53.351	2.016	1	2437400	+		55616	22111	45928	45967	60735	60735					0.0920785050197992
SVLVPILFGI	10	Unmodified	_SVLVPILFGI_					0	0	0		tr|A0A7D7A106|A0A7D7A106_9CLOTUracilpermeaseOS=ClostridiumintestinaleOX=36845GN=uraAPE=3SV=1	tr|A0A7D7A106|A0A7D7A106_9CLOTUracilpermeaseOS=ClostridiumintestinaleOX=36845GN=uraAPE=3SV=1	tr|A0A7D7A106|A0A7D7A106_9CLOTUracilpermeaseOS=ClostridiumintestinaleOX=36845GN=uraAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.771484375	2	529.336436	1056.65832	-0.36968	-0.00019569	-3.9048	-0.002067	-4.2745	-0.0022627	529.3341354106963	96.424	1.4295	95.396	95.113	96.542	-1.0281					61	28	3	0	0	0	0.027084	1	8737	8737		17.365	2.5001	1	149420			55617	36018	45929	45968	60736	60736					0.13225551556297432
SVLVPSTLLRR	11	Unmodified	_SVLVPSTLLRR_					0	0	0			REV__ENST00000413292.1_1_11:64691662-64691767:+|nuORF	REV__ENST00000413292.1_1_11:64691662-64691767:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	414.5911560058594	3	414.262712	1239.76631	-0.073008	-3.0245E-05	-2.2325	-0.00092485	-2.3055	-0.0009551	414.2617441372115	33.001	0.89694	30.291	30.075	30.972	-2.7097					32	17	4	0	0	0	0.026101	1	1194	1194		26.75	0	1	65044	+		55618	25508	45930	45969	60737	60737					0.15601316139532173
SVLVPVPAS	9	Unmodified	_SVLVPVPAS_					0	0	0		nc|ENSG00000085185|Q5H9F3-4|BCORL1;ENSG00000085185|ENST00000540052|BCORL1;BCORL1|p.S894Rfs*26|1|0.34|ENSG00000085185|chrX:130015450-130015465|GCTCCTTCGTTCCAGA/-|frameshift_variant;BCORL1|p.F895Sfs*33|1|0.08|ENSG00000085185|chrX:130015455-130015456|-/CCACTTCC|frameshift_variant;nc|ENSG00000085185|Q5H9F3-1|BCORL1	nc|ENSG00000085185|Q5H9F3-4|BCORL1	nc|ENSG00000085185|Q5H9F3-4|BCORL1	MULTI-MSMS	OvCa9_classI_Rep2	2	434.7594299316406	2	434.760561	867.506569	-0.54476	-0.00023684	-2.3576	-0.001025	-2.9023	-0.0012618	434.7594502813862	138.35	2.0585	138.12	137.54	139.6	-0.22697					104	41	4	0	0	0	0.61208	1	13844	13844		30.504	5.0535	1	279250			55619	1723	45931	45970	60738	60738					0.06751570528570028
SVLVSKLAR	9	Unmodified	_SVLVSKLAR_					0	0	0			REV__DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	REV__DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.7524719238281	2	486.813659	971.612765	-1.1315	-0.00055085	0.045072	2.1941E-05	-1.0865	-0.00052891	486.8136189216109	50.716	0.31084	47.542	47.36	47.671	-3.1734					11	5	3	0	0	0	0.027462	1	2939	2939		5.9211	0	1	48176	+		55620	16340	45932	45971	60739	60739					0.12582326093888696
SVLWPWIN	8	Unmodified	_SVLWPWIN_					0	0	0		nc|ENSG00000184216|P51617-4|IRAK1;nc|ENSG00000184216|P51617-2|IRAK1;nc|ENSG00000184216|P51617-3|IRAK1;ENSG00000184216|ENST00000369980|IRAK1	nc|ENSG00000184216|P51617-4|IRAK1	nc|ENSG00000184216|P51617-4|IRAK1	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.8115539550781	2	507.774003	1013.53345	0.057558	2.9226E-05	-0.76606	-0.00038898	-0.7085	-0.00035976	507.77343611602157	72.211	0.72919	69.703	69.226	69.955	-2.5072					19	13	2	0	0	0	0.028476	1	5860	5860		31.955	0	1	20879			55621	8137	45933	45972	60740	60740					0.027226791397424677
SVLYVLTDE	9	Unmodified	_SVLYVLTDE_					0	0	0			REV__nc|ENSG00000198885|Q6GPH6-2|ITPRIPL1	REV__nc|ENSG00000198885|Q6GPH6-2|ITPRIPL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.7722778320312	2	519.771322	1037.52809	-0.83539	-0.00043421	-1.949	-0.001013	-2.7844	-0.0014472	519.7700807494525	55.836	1.4676	52.541	52.16	53.628	-3.2944					76	28	3	0	0	0	0.48324	1	3566	3566		44.117	1.6423	1	1897700	+		55622	23085	45934	45973	60741	60741					0.010829107665813353
SVMLFYGI	8	Unmodified	_SVMLFYGI_					0	0	0			REV__ENSG00000152766|ENST00000371930|ANKRD22	REV__ENSG00000152766|ENST00000371930|ANKRD22	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.7656555175781	2	465.243689	928.472826	-0.70888	-0.0003298	-3.5002	-0.0016284	-4.2091	-0.0019582	465.2419853538812	69.308	1.7107	65.827	65.468	67.178	-3.4812					75	34	5	0	0	0	0.028476	1	5141	5141		8.8223	0	1	207500	+		55623	20302	45935	45974	60742	60742					0.005728257651526292
SVMLFYGI	8	Unmodified	_SVMLFYGI_					0	0	0			REV__ENSG00000152766|ENST00000371930|ANKRD22	REV__ENSG00000152766|ENST00000371930|ANKRD22	MULTI-MATCH	OvCa9_classI_Rep2	2		2	465.243689	928.472826	-1.1279	-0.00052476	-2.9363	-0.0013661	-4.0643	-0.0018909	465.24210711636306	68.569	0.99135	65.949	65.474	66.465	-2.6203	0.061056	0.00027287	NaN	21.702	40	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49730	+		55624	20302	45935	45974							0.005728257651526292
SVMLLLLLI	9	Unmodified	_SVMLLLLLI_					0	0	0			REV__tr|A0A553SP33|A0A553SP33_NIACIFlagellarM-ringproteinOS=NialliacirculansOX=1397GN=fliFPE=3SV=1	REV__tr|A0A553SP33|A0A553SP33_NIACIFlagellarM-ringproteinOS=NialliacirculansOX=1397GN=fliFPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.7825012207031	2	507.835214	1013.65588	0.12733	6.466E-05	2.3964	0.001217	2.5238	0.0012817	507.83643909289606	81.053	0.55219	79.405	79.164	79.716	-1.6485					16	10	2	0	0	0	0.027462	1	6847	6847		12.207	3.3845	1	18699	+		55625	30485	45936	45975	60743	60743					0.14959379826984787
SVMRVLIN	8	Unmodified	_SVMRVLIN_					0	0	0			REV__ENSG00000243147|ENST00000296102|MRPL33	REV__ENSG00000243147|ENST00000296102|MRPL33	MULTI-MSMS	OvCa9_classI_Rep3	3	466.2717590332031	2	466.273312	930.532072	-1.0122	-0.00047197	-2.8611	-0.0013341	-3.8733	-0.001806	466.2718496738201	86.977	1.6309	84.801	84.28	85.911	-2.1768					88	31	4	0	0	0	0.60331	1	5203	5203		63.306	8.53	1	745130	+		55626	23464	45937	45976	60744	60744					0.06402721779352305
SVMWIYRLLFG	11	Unmodified	_SVMWIYRLLFG_					0	0	0			REV__ENST00000449934.6_1_6:31371392-31378514:+|nuORF	REV__ENST00000449934.6_1_6:31371392-31378514:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	461.9474182128906	3	462.253048	1383.73731	-0.73437	-0.00033947	-3.8998	-0.0018027	-4.6341	-0.0021421	462.2507134144984	20.976	0.40862	19.638	19.362	19.77	-1.3386					12	8	3	0	0	0	0.026221	1	122	122		14.086	1.1285	1	11346	+		55627	25954	45938	45977	60745	60745					0.06079455518897703
SVNALFSL	8	Unmodified	_SVNALFSL_					0	0	0			REV__nc|ENSG00000180773|Q6YBV0-2|SLC36A4	REV__nc|ENSG00000180773|Q6YBV0-2|SLC36A4	MULTI-MSMS	OvCa9_classI_Rep2	2	425.7373962402344	2	425.737086	849.459619	-0.3064	-0.00013045	0.43115	0.00018356	0.12474	5.3108E-05	425.7371449934775	95.209	1.5873	94.181	93.824	95.411	-1.0281					88	31	4	0	0	0	0.041295	2	8549	8537;8549		172.03	9.0616	1	533990	+		55628	22193	45939	45978	60746;60747	60747					0.028867109774296296
SVNALFSL	8	Unmodified	_SVNALFSL_					0	0	0			REV__nc|ENSG00000180773|Q6YBV0-2|SLC36A4	REV__nc|ENSG00000180773|Q6YBV0-2|SLC36A4	MULTI-MSMS	OvCa9_classI_Rep3	3	425.7381286621094	2	425.737086	849.459619	-0.19568	-8.3306E-05	0.10843	4.6163E-05	-0.087245	-3.7143E-05	425.73699107724866	95.942	1.7724	94.114	93.83	95.602	-1.8286					84	34	4	0	0	0	0.20102	1	6301	6301		124.59	3.9733	1	708590	+		55629	22193	45939	45978	60748	60748					0.028867109774296296
SVNALFSL	8	Unmodified	_SVNALFSL_					0	0	0			REV__nc|ENSG00000180773|Q6YBV0-2|SLC36A4	REV__nc|ENSG00000180773|Q6YBV0-2|SLC36A4	MULTI-MSMS	OvCa9_classI_Rep4_	4	425.7381286621094	2	425.737086	849.459619	1.0285	0.00043788	-0.8692	-0.00037005	0.15933	6.7832E-05	425.7366052806573	96.621	1.6646	94.195	93.913	95.577	-2.4256					79	32	4	0	0	0	0.40148	1	8554	8554		87.754	0	1	775360	+		55630	22193	45939	45978	60749	60749					0.028867109774296296
SVNGKVLSK	9	Unmodified	_SVNGKVLSK_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	OvCa9_classI_Rep2	2	466.28173828125	2	466.282192	930.549831	-2.6152	-0.0012194	2.1372	0.00099653	-0.47797	-0.00022287	466.2831375283496	36.825	2.2186	34.116	33.893	36.112	-2.7097					109	44	4	0	0	0	0.028475	11	1599	1593;1599;1605;1611;1617;1623;1629;1636;1660;1666;1692		136.99	46.212	1	2007800			55631	2296	45940	45979	60750;60751;60752;60753;60754;60755;60756;60757;60758;60759;60760	60751					0.08177760305841275
SVNGKVLSK	9	Unmodified	_SVNGKVLSK_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.2823181152344	2	466.282192	930.549831	0.96262	0.00044885	-1.0745	-0.00050103	-0.1119	-5.2179E-05	466.2815916035733	36.313	1.2972	33.465	33.189	34.486	-2.849					70	25	4	0	0	0	0.075618	4	1243	1233;1243;1255;1289		104.01	32.136	1	844520			55632	2296	45940	45979	60761;60762;60763;60764	60762					0.08177760305841275
SVNKNSVKGI	10	Unmodified	_SVNKNSVKGI_					0	0	0			REV__tr|A0A7D6ZX79|A0A7D6ZX79_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=mutSPE=3SV=1	REV__tr|A0A7D6ZX79|A0A7D6ZX79_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=mutSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3038940429688	2	523.303655	1044.59276	-2.1228	-0.0011108	2.0352	0.001065	-0.087543	-4.5811E-05	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.762	1	11381	11381		23.523	1.5628	1	183010	+		55633	32319	45941	45980	60765	60765					0.07224530363305348
SVNLTLISI	9	Unmodified	_SVNLTLISI_					0	0	0			REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|18|1|sense	REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|18|1|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.29205322265625	2	480.292225	958.569897	0.68249	0.0003278	-1.6167	-0.00077649	-0.93421	-0.00044869	480.29123367770023	110.99	0.94683	109.39	108.96	109.91	-1.6011					31	17	2	0	0	0	0.49652	1	10224	10224		42.864	0	1	77081	+		55634	28467	45942	45981	60766	60766					0.08895511245816579
SVNLTLISI	9	Unmodified	_SVNLTLISI_					0	0	0			REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|18|1|sense	REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|18|1|sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	480.292225	958.569897	-0.11051	-5.3077E-05	0.14689	7.055E-05	0.03638	1.7473E-05	480.29208838923785	109.43	1.237	109.26	108.77	110.01	-0.17237	-0.067092	0.00085447	NaN	42.864	44	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37624	+		55635	28467	45942	45981							0.08895511245816579
SVNLTLISI	9	Unmodified	_SVNLTLISI_					0	0	0			REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|18|1|sense	REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|18|1|sense	MULTI-MATCH	OvCa9_classI_Rep3	3		2	480.292225	958.569897	0.65624	0.00031519	-1.5148	-0.00072756	-0.85859	-0.00041237	480.291230591427	110.47	1.3469	109.32	108.66	110.01	-1.1444	-0.0028488	-0.00074175	NaN	42.864	44	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55526	+		55636	28467	45942	45981							0.08895511245816579
SVNLTLISI	9	Unmodified	_SVNLTLISI_					0	0	0			REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|18|1|sense	REV__L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|18|1|sense	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	480.292225	958.569897	0.68249	0.0003278	-1.6167	-0.00077649	-0.93421	-0.00044869	480.29123367770023	110.99	0.94683	109.39	108.96	109.91	-1.6011	0.069941	-0.00083961	NaN	42.864	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77081	+		55637	28467	45942	45981							0.08895511245816579
SVNPWSFTI	9	Unmodified	_SVNPWSFTI_					0	0	0		ENST00000445178.1_1_2:77216995-77236179:+|nuORF	ENST00000445178.1_1_2:77216995-77236179:+|nuORF	ENST00000445178.1_1_2:77216995-77236179:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	525.7623901367188	2	525.766374	1049.5182	-1.0057	-0.00052877	-4.1349	-0.002174	-5.1406	-0.0027027	525.7640860878864	63.827	1.9331	61.082	60.638	62.571	-2.7444					79	36	4	0	0	0	0.50149	1	4867	4867		42.396	0.96952	1	975490			55638	11972	45943	45982	60767	60767					-0.004582324480907118
SVNQIHTAI	9	Unmodified	_SVNQIHTAI_					0	0	0		tr|A0A553STT7|A0A553STT7_NIACIClassAbeta-lactamase-relatedserinehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05735PE=4SV=1	tr|A0A553STT7|A0A553STT7_NIACIClassAbeta-lactamase-relatedserinehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05735PE=4SV=1	tr|A0A553STT7|A0A553STT7_NIACIClassAbeta-lactamase-relatedserinehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05735PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	491.7875061035156	2	491.769448	981.524344	-0.34039	-0.00016739	0.30612	0.00015054	-0.034274	-1.6855E-05	491.76952073014263	73.158	1.3877	70.67	70.282	71.67	-2.4873					43	27	3	0	0	0	0.027392	1	3613	3613		63.306	0	1	45830			55639	34532	45944	45983	60768	60768					0.032842857833998096
SVPEFILL	8	Unmodified	_SVPEFILL_					0	0	0		ENSG00000172188|ENST00000641580|OR4C11	ENSG00000172188|ENST00000641580|OR4C11	ENSG00000172188|ENST00000641580|OR4C11	MULTI-SECPEP	OvCa99_classI_Rep5	1	459.2109069824219	2	459.270761	916.52697	-0.82059	-0.00037687	-0.6532	-0.0003	-1.4738	-0.00067687	459.2692769305395	49.696	0.39404	49.696	49.462	49.856	0					19	8	3	0	0	0	0.028476	1	3700	3700		71.378	5.4805	1	137000			55640	7273	45945	45984	60769	60769					0.06536741188392625
SVPGAAAARLC	11	Unmodified	_SVPGAAAARLC_					0	0	0		ENST00000482818.1_1_22:29724812-29725148:-|nuORF	ENST00000482818.1_1_22:29724812-29725148:-|nuORF	ENST00000482818.1_1_22:29724812-29725148:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.6426086425781	2	508.271301	1014.52805	-0.4491	-0.00022826	-2.7839	-0.001415	-3.233	-0.0016432	508.269862675019	29.267	0.34909	29.267	29.087	29.436	0					11	6	3	0	0	0	0.025746	1	1037	1037		25.574	8.2091	1	39166			55641	12579	45946	45985	60770	60770					0.02136632285635187
SVPGRSPTL	9	Unmodified	_SVPGRSPTL_					0	0	0			REV__nc|ENSG00000088888|Q7Z434-4|MAVS	REV__nc|ENSG00000088888|Q7Z434-4|MAVS	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.3148498535156	2	457.258717	912.50288	-0.045517	-2.0813E-05	-2.8834	-0.0013185	-2.9289	-0.0013393	457.2570381518319	71.247	0.1993	71.247	71.068	71.267	0					5	4	2	0	0	0	0.027461	1	6874	6874		40.778	0	1	86069	+		55642	17188	45947	45986	60771	60771					0.04312900754723614
SVPNITYEIG	10	Unmodified	_SVPNITYEIG_					0	0	0		tr|A0A553SU67|A0A553SU67_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_06460PE=4SV=1	tr|A0A553SU67|A0A553SU67_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_06460PE=4SV=1	tr|A0A553SU67|A0A553SU67_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_06460PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.327392578125	2	546.782222	1091.54989	-0.15506	-8.4785E-05	-1.7447	-0.00095396	-1.8997	-0.0010387	547.2842019021529	64.584	0.50059	64.584	64.334	64.834	0					6	4	2	0	0	0	0.026734	1	5914	5914		39.253	16.21	1	483020			55643	34573	45948	45987	60772	60772					0.007777155151643456
SVPQKQLL	8	Unmodified	_SVPQKQLL_					0	0	0			REV__chrX:154432459-154434253|115|79.2|0.03|11.6|+|0|ATP6AP1,None|1	REV__chrX:154432459-154434253|115|79.2|0.03|11.6|+|0|ATP6AP1,None|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	457.27069091796875	2	456.779285	911.544017	1.4965	0.00068357	2.434	0.0011118	3.9305	0.0017954	456.7803261350895	71.639	0.94182	69.132	68.858	69.799	-2.5072					27	17	2	0	0	0	0.028476	1	5743	5743		13.775	0	1	39259	+		55644	16134	45949	45988	60773	60773					0.08470661794183343
SVPQPRPP	8	Unmodified	_SVPQPRPP_					0	0	0		ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	ENSG00000165355|ENST00000298097|FBXO33	MULTI-MSMS	OvCa9_classI_Rep2	2	439.24798583984375	2	439.248152	876.481751	-0.24789	-0.00010888	0.38414	0.00016873	0.13626	5.985E-05	439.2481798597059	51.725	1.6844	48.913	48.203	49.888	-2.8129					75	33	4	0	0	0	0.6962	1	3402	3402		44.117	0	1	208270			55645	6554	45950	45989	60774	60774					0.038569354458559246
SVPQRSTL	8	Unmodified	_SVPQRSTL_					0	0	0		nc|ENSG00000156970|O60566-2|BUB1B;ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B;ENST00000559461.1_1_15:40475930-40477631:+|nuORF	nc|ENSG00000156970|O60566-2|BUB1B	nc|ENSG00000156970|O60566-2|BUB1B	MULTI-MSMS	OvCa9_classI_Rep2	2	444.25140380859375	2	444.250892	886.48723	1.3499	0.00059967	-1.3711	-0.00060911	-0.021233	-9.4329E-06	444.2501838124347	46.728	1.6349	44.018	43.696	45.331	-2.7097					87	32	4	0	0	0	0.29515	1	2794	2794		108.09	3.3409	1	733010			55646	5866	45951	45990	60775	60775					0.03944614237684618
SVPQRSTL	8	Unmodified	_SVPQRSTL_					0	0	0		nc|ENSG00000156970|O60566-2|BUB1B;ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B;ENST00000559461.1_1_15:40475930-40477631:+|nuORF	nc|ENSG00000156970|O60566-2|BUB1B	nc|ENSG00000156970|O60566-2|BUB1B	MSMS	OvCa9_classI_Rep4_	4	444.2514343261719	2	444.250892	886.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.025	1	43.953	43.453	44.453	-3.0724								0	0	0	0.06217	1	2503	2503		124.59	9.1353	1				55647	5866	45951	45990	60776	60776					0.03944614237684618
SVPQRSTL	8	Unmodified	_SVPQRSTL_					0	0	0		nc|ENSG00000156970|O60566-2|BUB1B;ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B;ENST00000559461.1_1_15:40475930-40477631:+|nuORF	nc|ENSG00000156970|O60566-2|BUB1B	nc|ENSG00000156970|O60566-2|BUB1B	MSMS	OvCa9_classI_Rep4_	4	444.2520751953125	2	444.250892	886.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.128	1	44.056	43.556	44.556	-3.0724								0	0	0	0.033233	1	2515	2515		133.81	14.256	1				55648	5866	45951	45990	60777	60777					0.03944614237684618
SVPQRSTL	8	Unmodified	_SVPQRSTL_					0	0	0		nc|ENSG00000156970|O60566-2|BUB1B;ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B;ENST00000559461.1_1_15:40475930-40477631:+|nuORF	nc|ENSG00000156970|O60566-2|BUB1B	nc|ENSG00000156970|O60566-2|BUB1B	MSMS	OvCa9_classI_Rep4_	4	444.25250244140625	2	444.250892	886.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	47.363	1	44.29	43.79	44.79	-3.0724								0	0	0	0.30129	1	2543	2543		79.451	2.6044	1				55649	5866	45951	45990	60778	60778					0.03944614237684618
SVPRGFLSY	9	Unmodified	_SVPRGFLSY_					0	0	0			REV__sp|Q6SW87|RIR1_HCMVMRibonucleoside-diphosphatereductaselargesubunit-likeproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=RIR1PE=3SV=1	REV__sp|Q6SW87|RIR1_HCMVMRibonucleoside-diphosphatereductaselargesubunit-likeproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=RIR1PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.2760620117188	2	513.274367	1024.53418	-0.6594	-0.00033845	3.3088	0.0016983	2.6494	0.0013599	513.275866810469	93.774	1.4584	91.267	90.913	92.372	-2.5072					72	30	3	0	0	0	0.51865	1	8219	8219		40.778	2.9666	1	563090	+		55650	29431	45952	45991	60779	60779					0.022894737888236705
SVQNGIVSSP	10	Unmodified	_SVQNGIVSSP_					0	0	0		ENST00000559814.5_1_15:29346087-29400775:+|nuORF	ENST00000559814.5_1_15:29346087-29400775:+|nuORF	ENST00000559814.5_1_15:29346087-29400775:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	494.75811767578125	2	494.258914	986.503274	-0.72896	-0.0003603	-1.3453	-0.0006649	-2.0742	-0.0010252	494.25905494402974	67.964	0.87412	67.964	67.566	68.44	0					78	21	6	0	0	0	0.5675	1	6360	6360		45.972	0	1	22186000			55651	13724	45953	45992	60780	60780					0.009482756839020112
SVQPGEKNKTL	11	Unmodified	_SVQPGEKNKTL_					0	0	0			REV__NCOA7|p.E628Lfs*8|1|0.08|ENSG00000111912|chr6:125889932-125889933|-/AG|frameshift_variant	REV__NCOA7|p.E628Lfs*8|1|0.08|ENSG00000111912|chr6:125889932-125889933|-/AG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	600.3308715820312	2	600.832777	1199.651	-0.076451	-4.5934E-05	-2.4562	-0.0014758	-2.5327	-0.0015217	600.83148103914	81.165	1.8731	79.516	78.565	80.438	-1.6485					63	36	2	0	0	0	0.026007	1	6883	6883		18.262	6.6262	1	298950	+		55652	18070	45954	45993	60781	60781					0.05916167217901602
SVQQIYNV	8	Unmodified	_SVQQIYNV_					0	0	0			REV__chr19:918668-919490|306|13.68|0.33|5.35|+|0|KISS1R,KISS1R|1	REV__chr19:918668-919490|306|13.68|0.33|5.35|+|0|KISS1R,KISS1R|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.78131103515625	2	475.750724	949.486896	-0.065571	-3.1195E-05	-0.19927	-9.4802E-05	-0.26484	-0.000126	475.75057244669307	114.23	0.83794	114.11	113.81	114.65	-0.11777					24	16	2	0	0	0	0.028476	1	10884	10884		23.042	6.5693	1	26210	+		55653	15989	45955	45994	60782	60782					0.010131945177931811
SVQTWSALN	9	Unmodified	_SVQTWSALN_					0	0	0			REV__ENST00000525869.1_1_1:36887681-36888388:-|nuORF	REV__ENST00000525869.1_1_1:36887681-36888388:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.2784118652344	2	503.253631	1004.49271	0.10443	5.2552E-05	-0.41363	-0.00020816	-0.30921	-0.00015561	503.2532580431949	70.702	0.50571	70.702	70.488	70.994	0					27	12	3	0	0	0	0.027462	1	6793	6793		19.997	12.306	1	959610	+		55654	27123	45956	45995	60783	60783					-0.009357069705401955
SVRGRLEV	8	Unmodified	_SVRGRLEV_					0	0	0			REV__ENST00000427993.7_3_1:100435608-100440614:+|nuORF	REV__ENST00000427993.7_3_1:100435608-100440614:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	459.2109069824219	2	458.272158	914.529764	-0.61285	-0.00028085	0.46349	0.0002124	-0.14936	-6.845E-05	458.2725937501553	49.454	0.34956	49.454	49.33	49.679	0					10	7	2	0	0	0	0.028476	1	3700	3700		15.642	12.232	1	127890	+		55655	25686	45957	45996	60784	60784					0.06908009365906764
SVRHWKVL	8	Unmodified	_SVRHWKVL_					0	0	0		ENST00000566392.5_1_16:67336668-67360655:-|nuORF	ENST00000566392.5_1_16:67336668-67360655:-|nuORF	ENST00000566392.5_1_16:67336668-67360655:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	512.8052368164062	2	512.806168	1023.59778	0.96768	0.00049623	-2.1644	-0.0011099	-1.1968	-0.00061371	512.8048988441653	129.99	1.0876	129.77	129.46	130.55	-0.22696					55	21	4	0	0	0	0.6962	1	12790	12790		44.117	1.7207	1	154290			55656	13844	45958	45997	60785	60785					0.08692879016552979
SVRIHYPK	8	Unmodified	_SVRIHYPK_					0	0	0			REV__ENSG00000117593|ENST00000649689|DARS2	REV__ENSG00000117593|ENST00000649689|DARS2	MULTI-MSMS	OvCa99_classI_Rep5	1	500.2890625	2	500.290351	998.566149	-0.25733	-0.00012874	-3.7833	-0.0018927	-4.0406	-0.0020215	500.28819535831167	42.99	0.60306	42.99	42.709	43.312	0					38	13	5	0	0	0	0.67745	1	2808	2808		47.916	0	1	1696800	+		55657	18358	45959	45998	60786	60786					0.06680886262597596
SVRIHYPK	8	Unmodified	_SVRIHYPK_					0	0	0			REV__ENSG00000117593|ENST00000649689|DARS2	REV__ENSG00000117593|ENST00000649689|DARS2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	500.290351	998.566149	-1.1074	-0.00055402	1.1635	0.00058206	0.056061	2.8047E-05	500.7933094152019	46.182	0.41898	43.11	42.927	43.346	-3.0724	0.059985	0.0044421	NaN	47.916	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20721	+		55658	18358	45959	45998							0.06680886262597596
SVRKIWPGL	9	Unmodified	_SVRKIWPGL_					0	0	0			REV__HERVH-int_dup82|chr1:53424769-53427698:+|2.2654386177007835|0.0864871400321217|4.71|417.0|106|1|anti-sense	REV__HERVH-int_dup82|chr1:53424769-53427698:+|2.2654386177007835|0.0864871400321217|4.71|417.0|106|1|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	528.3185424804688	2	528.321651	1054.62875	0.75461	0.00039868	4.0708	0.0021507	4.8254	0.0025494	528.3237483827097	157.74	1.8079	157.74	156.75	158.56	0					55	36	2	0	0	0	0.46356	1	18472	18472		45.972	7.1661	1	59987	+		55659	15830	45960	45999	60787	60787					0.10362032330772308
SVRPCPNTLL	10	Unmodified	_SVRPCPNTLL_					0	0	0		ENST00000485732.5_1_9:139747646-139747976:+|nuORF	ENST00000485732.5_1_9:139747646-139747976:+|nuORF	ENST00000485732.5_1_9:139747646-139747976:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	550.302490234375	2	550.300059	1098.58556	0.61726	0.00033968	2.1679	0.001193	2.7851	0.0015327	550.3010836773232	141.86	2.0274	141.86	141.49	143.51	0					101	40	5	0	0	0	0.44431	1	16551	16551		62.107	9.1707	1	2049300			55660	12614	45961	46000	60788	60788					0.040214744912191236
SVRRLDANHI	10	Unmodified	_SVRRLDANHI_					0	0	0		ENST00000527773.1_1_11:27405881-27407050:-|nuORF	ENST00000527773.1_1_11:27405881-27407050:-|nuORF	ENST00000527773.1_1_11:27405881-27407050:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	590.8306884765625	2	590.830903	1179.64725	0.72982	0.0004312	-0.6491	-0.00038351	0.080723	4.7694E-05	590.8303573746414	32.589	1.206	29.894	29.544	30.75	-2.6954					63	26	4	0	0	0	0.6104	1	780	780		40.778	13.982	1	114090			55661	13243	45962	46001	60789	60789					0.06461542234683293
SVRRVGPALP	10	Unmodified	_SVRRVGPALP_					0	0	0			REV__nc|ENSG00000130518|Q9H0B3-3|IQCN	REV__nc|ENSG00000130518|Q9H0B3-3|IQCN	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.311279296875	2	526.322183	1050.62981	1.4961	0.00078742	3.4202	0.0018001	4.9162	0.0025875	526.3237568466844	122.65	0.7833	122.65	122.4	123.18	0					22	16	2	0	0	0	0.026956	1	14171	14171		42.396	19.354	1	455960	+		55662	28023	45963	46002	60790	60790					0.10652246699692114
SVRSFQSVL	9	Unmodified	_SVRSFQSVL_					0	0	0		ENST00000405546.7_1_2:242611847-242611961:+|nuORF	ENST00000405546.7_1_2:242611847-242611961:+|nuORF	ENST00000405546.7_1_2:242611847-242611961:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	511.7862548828125	2	511.785099	1021.55564	-0.47019	-0.00024064	4.1204	0.0021088	3.6502	0.0018681	511.7870120852246	115.96	2.5713	114.92	114.55	117.12	-1.0414					116	51	4	0	0	0	0.3076	1	8628	8628		62.107	1.1355	1	393220			55663	11466	45964	46003	60791	60791					0.04572858817527958
SVRVKINPK	9	Unmodified	_SVRVKINPK_					0	0	0		ENSG00000162104|ENST00000294016|ADCY9;ADCY9|p.V157Gfs*30|1|0.4|ENSG00000162104|chr16:4114973-4114973|A/-|frameshift_variant	ENSG00000162104|ENST00000294016|ADCY9	ENSG00000162104|ENST00000294016|ADCY9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.7755737304688	2	520.832383	1039.65021	-0.42469	-0.00022119	-0.66425	-0.00034596	-1.0889	-0.00056715	520.8319199497763	74.92	0.91763	71.689	71.483	72.4	-3.2308					31	18	3	0	0	0	0.027462	1	5855	5855		26.693	3.6504	1	142570			55664	6157	45965	46004	60792	60792					0.13197417359515384
SVRWPRVL	8	Unmodified	_SVRWPRVL_					0	0	0			REV__ENST00000598766.1_1_19:42822030-42825243:+|nuORF	REV__ENST00000598766.1_1_19:42822030-42825243:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.84368896484375	2	506.806168	1011.59778	-0.923	-0.00046778	3.4064	0.0017264	2.4834	0.0012586	506.80935401290833	76.096	0.52736	74.242	73.938	74.466	-1.854					9	9	2	0	0	0	0.028476	1	6283	6283		14.664	0	1	11352	+		55665	24248	45966	46005	60793	60793					0.09244879016557661
SVSAVNLPK	9	Unmodified	_SVSAVNLPK_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MULTI-MSMS	OvCa9_classI_Rep4_	4	457.7698974609375	2	457.768917	913.523281	1.1545	0.0005285	-1.4599	-0.00066831	-0.30541	-0.00013981	457.7681422086912	67.42	1.3749	63.93	63.59	64.965	-3.4902					49	27	3	0	0	0	0.13504	1	4953	4953		87.696	21.893	1	356720			55666	3215	45967	46006	60794	60794					0.06306071414519465
SVSAVNLPK	9	Unmodified	_SVSAVNLPK_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	457.768917	913.523281	0.87907	0.00040241	-0.98853	-0.00045252	-0.10946	-5.0108E-05	457.76833862607606	66.785	1.0916	64.089	63.716	64.808	-2.6958	0.07973	0.0002766	NaN	87.696	37	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73152			55667	3215	45967	46006							0.06306071414519465
SVSIPFRYS	9	Unmodified	_SVSIPFRYS_					0	0	0		ENST00000308893.8_1_16:29985169-29989140:+|nuORF	ENST00000308893.8_1_16:29985169-29989140:+|nuORF	ENST00000308893.8_1_16:29985169-29989140:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.8585205078125	2	528.279649	1054.54475	-0.073207	-3.8674E-05	-2.8527	-0.001507	-2.9259	-0.0015457	528.2776312000749	31.435	0.24504	31.435	31.264	31.509	0					6	4	2	0	0	0	0.027462	1	1274	1274		26.693	3.6504	1	6844.6			55668	10267	45968	46007	60795	60795					0.0196545644323578
SVSKLLLVI	9	Unmodified	_SVSKLLLVI_					0	0	0		nc|ENSG00000023171|Q3KR37-2|GRAMD1B;nc|ENSG00000023171|Q3KR37|GRAMD1B;nc|ENSG00000023171|Q3KR37-4|GRAMD1B;ENST00000532581.5_1_11:123431173-123490076:+|nuORF;ENSG00000023171|ENST00000635736|GRAMD1B;ENST00000525945.1_1_11:123484122-123493300:+|nuORF;nc|ENSG00000023171|Q3KR37-3|GRAMD1B	nc|ENSG00000023171|Q3KR37-2|GRAMD1B	nc|ENSG00000023171|Q3KR37-2|GRAMD1B	MULTI-MSMS	OvCa99_classI_Rep5	1	486.3298034667969	2	486.328611	970.642668	1.2118	0.00058934	0.73513	0.00035751	1.9469	0.00094685	486.3287853510891	123.37	0.51616	123.37	123.09	123.61	0					22	10	3	0	0	0	0.22621	1	14225	14225		71.877	24.22	1	299040			55669	1035	45969	46008	60796	60796					0.15617265039236372
SVSMRKSVI	9	Oxidation (M)	_SVSM(Oxidation (M))RKSVI_		SVSM(1)RKSVI		SVSM(88)RKSVI	0	0	1			REV__tr|A0A7D6ZY25|A0A7D6ZY25_9CLOTDUF2500domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01535PE=4SV=1	REV__tr|A0A7D6ZY25|A0A7D6ZY25_9CLOTDUF2500domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01535PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	511.7873840332031	2	511.786784	1021.55902	-0.47019	-0.00024064	0.8272	0.00042335	0.35701	0.00018271	511.7870120852246	115.96	2.5713	114.92	114.55	117.12	-1.0414					116	51	4	0	0	0	0.13482	1	8645	8645		87.754	8.3033	1	393220	+		55670	32357	45970	46009	60797	60797		717			0.04909785599875249
SVSNVVITK	9	Unmodified	_SVSNVVITK_					0	0	0		nc|ENSG00000085832|P42566-2|EPS15;ENSG00000085832|ENST00000371733|EPS15	nc|ENSG00000085832|P42566-2|EPS15	nc|ENSG00000085832|P42566-2|EPS15	MULTI-MSMS	OvCa9_classI_Rep2	2	473.7818603515625	2	473.782025	945.549496	-0.52218	-0.0002474	0.46052	0.00021819	-0.061665	-2.9216E-05	473.7821092424193	59.416	1.8313	56.635	56.241	58.073	-2.7801					74	34	4	0	0	0	0.22035	1	4339	4339		72.879	5.3856	1	254760			55671	1741	45971	46010	60798	60798					0.07454340585991304
SVSNVVITK	9	Unmodified	_SVSNVVITK_					0	0	0		nc|ENSG00000085832|P42566-2|EPS15;ENSG00000085832|ENST00000371733|EPS15	nc|ENSG00000085832|P42566-2|EPS15	nc|ENSG00000085832|P42566-2|EPS15	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.7828063964844	2	473.782025	945.549496	0.95397	0.00045197	-1.484	-0.00070311	-0.53007	-0.00025114	473.7812195441536	59.91	2.0672	56.48	56.111	58.178	-3.43					93	41	3	0	0	0	0.22621	2	4089	4089;4121		71.877	6.4121	1	1554800			55672	1741	45971	46010	60799;60800	60799					0.07454340585991304
SVSSSAKAVL	10	Unmodified	_SVSSSAKAVL_					0	0	0			REV__ENSG00000163872|ENST00000305135|YEATS2	REV__ENSG00000163872|ENST00000305135|YEATS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.7720642089844	2	474.771657	947.528761	1.4458	0.0006864	-0.42195	-0.00020033	1.0238	0.00048607	474.7714054184023	37.259	2.3363	34.367	33.695	36.031	-2.8925					116	46	4	0	0	0	0.67931	1	1420	1420		32.812	6.1195	1	1197600	+		55673	20903	45972	46011	60801	60801					0.05289750206316057
SVSSVKGLGI	10	Unmodified	_SVSSVKGLGI_					0	0	0		ENSG00000163293|ENST00000295461|NIPAL1	ENSG00000163293|ENST00000295461|NIPAL1	ENSG00000163293|ENST00000295461|NIPAL1	MULTI-MSMS	OvCa9_classI_Rep2	2	473.7815246582031	2	473.782025	945.549496	-0.52218	-0.0002474	0.46052	0.00021819	-0.061665	-2.9216E-05	473.7821092424193	59.416	1.8313	56.635	56.241	58.073	-2.7801					74	34	4	0	0	0	0.3976	1	4345	4345		68.787	5.253	1	254760			55674	6285	45973	46012	60802	60802					0.07454340586002672
SVSTHSPDL	9	Unmodified	_SVSTHSPDL_					0	0	0			REV__TCTE1|p.S16T|1|0.21|ENSG00000146221|chr6:44287780-44287780|A/T|missense_variant	REV__TCTE1|p.S16T|1|0.21|ENSG00000146221|chr6:44287780-44287780|A/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.7311096191406	2	471.729989	941.445425	-0.21854	-0.00010309	0.082196	3.8774E-05	-0.13634	-6.4318E-05	471.7299983342387	55.171	1.8798	51.923	51.439	53.319	-3.2474					84	36	3	0	0	0	0.16524	1	3441	3441		82.305	2.3658	1	1468500	+		55675	29489	45974	46013	60803	60803					-0.027639862415185235
SVSTVAQGIT	10	Unmodified	_SVSTVAQGIT_					0	0	0			REV__ENSG00000088386|ENST00000376503|SLC15A1	REV__ENSG00000088386|ENST00000376503|SLC15A1	MULTI-MSMS	OvCa99_classI_Rep5	1	482.7654113769531	2	481.761289	961.508025	-0.40599	-0.00019559	-0.16027	-7.7213E-05	-0.56627	-0.0002728	481.76118460398993	54.726	1.0231	54.726	54.378	55.401	0					75	23	4	0	0	0	0.62299	1	4416	4416		39.253	0	1	17610000	+		55676	17177	45975	46014	60804	60804					0.025731598266588662
SVSTVLTSKY	10	Unmodified	_SVSTVLTSKY_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-MSMS	OvCa9_classI_Rep3	3	542.7965698242188	2	542.797872	1083.58119	-0.61498	-0.00033381	0.19165	0.00010403	-0.42333	-0.00022979	542.7977090026309	77.496	1.3167	75.143	74.681	75.998	-2.3527					73	25	4	0	0	0	0.49595	1	4057	4057		54.722	12.248	1	596880			55677	8476	45976	46015	60805	60805					0.042742885492771165
SVSTVLTSKY	10	Unmodified	_SVSTVLTSKY_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.7982788085938	2	542.797872	1083.58119	-0.58621	-0.00031819	0.35184	0.00019098	-0.23437	-0.00012722	542.7978115624966	78.179	1.3839	75.363	74.825	76.209	-2.8165					70	28	4	0	0	0	0.38315	1	6285	6285		70.816	26.439	1	661010			55678	8476	45976	46015	60806	60806					0.042742885492771165
SVSTVLTSKYR	11	Unmodified	_SVSTVLTSKYR_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-MSMS	OvCa99_classI_Rep5	1	620.849853515625	2	620.848427	1239.6823	-0.5521	-0.00034277	0.54711	0.00033967	-0.0049949	-3.1011E-06	620.8486459549679	60.194	0.64465	60.194	59.957	60.602	0					31	15	3	0	0	0	0.1379	1	5240	5240		89.029	37.501	1	1578900			55679	8476	45977	46016	60807	60807					0.07204740251972908
SVSTVLTSKYR	11	Unmodified	_SVSTVLTSKYR_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-MSMS	OvCa9_classI_Rep2	2	620.8472900390625	2	620.848427	1239.6823	-2.4276	-0.0015072	2.3231	0.0014423	-0.10451	-6.4883E-05	620.8498208976038	63.021	1.7836	60.276	59.795	61.579	-2.7444					103	33	4	0	0	0	0.27273	2	4747	4747;4752		70.399	35.247	1	559010			55680	8476	45977	46016	60808;60809	60808					0.07204740251972908
SVSTVLTSKYR	11	Unmodified	_SVSTVLTSKYR_					0	0	0		ENSG00000206172|ENST00000320868|HBA1;ENSG00000188536|ENST00000251595|HBA2	ENSG00000206172|ENST00000320868|HBA1	ENSG00000206172|ENST00000320868|HBA1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	620.848427	1239.6823	-0.14093	-8.7495E-05	-0.67047	-0.00041626	-0.81139	-0.00050375	620.8479604525044	63.893	1.5965	60.418	60.061	61.657	-3.475	0.12156	-0.0030519	NaN	89.029	98	32	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1407500			55681	8476	45977	46016							0.07204740251972908
SVSVIKSEGK	10	Unmodified	_SVSVIKSEGK_					0	0	0			REV__L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|23|1|sense	REV__L1M1_dup9344|chr21:15784590-15787473:+|1.5014492037212643|0.185927186723819|3.01|429.0|23|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.28369140625	2	517.298039	1032.58152	0.7056	0.00036501	3.867	0.0020004	4.5726	0.0023654	517.3008606312221	154.36	0.7077	154.36	154.22	154.93	0					25	13	3	0	0	0	0.026714	1	18141	18141		35.152	0	1	41426	+		55682	28355	45978	46017	60810	60810					0.06653708269118397
SVSVVAPAV	9	Unmodified	_SVSVVAPAV_					0	0	0			REV__tr|A0A7D6VY33|A0A7D6VY33_9CLOTTrypsin-likepeptidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19755PE=3SV=1	REV__tr|A0A7D6VY33|A0A7D6VY33_9CLOTTrypsin-likepeptidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19755PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.7459411621094	2	414.744911	827.475269	1.1335	0.00047011	-0.73679	-0.00030558	0.3967	0.00016453	414.7444445848083	84.63	1.0449	81.967	81.549	82.594	-2.6629					46	21	3	0	0	0	0.32337	1	7103	7103		60.294	1.512	1	178530	+		55683	31807	45979	46018	60811	60811					0.054629974944646165
SVSVVAPAV	9	Unmodified	_SVSVVAPAV_					0	0	0			REV__tr|A0A7D6VY33|A0A7D6VY33_9CLOTTrypsin-likepeptidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19755PE=3SV=1	REV__tr|A0A7D6VY33|A0A7D6VY33_9CLOTTrypsin-likepeptidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19755PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	414.744911	827.475269	0.25238	0.00010467	0.35666	0.00014792	0.60904	0.0002526	414.7448711115738	83.56	1.6822	81.961	81.369	83.051	-1.5989	0.027567	0.0003846	NaN	60.294	62	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93134	+		55684	31807	45979	46018							0.054629974944646165
SVSVVAPAV	9	Unmodified	_SVSVVAPAV_					0	0	0			REV__tr|A0A7D6VY33|A0A7D6VY33_9CLOTTrypsin-likepeptidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19755PE=3SV=1	REV__tr|A0A7D6VY33|A0A7D6VY33_9CLOTTrypsin-likepeptidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19755PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	414.744911	827.475269	-0.23883	-9.9052E-05	0.12437	5.158E-05	-0.11446	-4.7471E-05	414.74490677304806	84.133	1.1289	81.872	81.478	82.607	-2.261	-0.060997	0.00019192	NaN	60.294	56	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	259300	+		55685	31807	45979	46018							0.054629974944646165
SVSVVAPAV	9	Unmodified	_SVSVVAPAV_					0	0	0			REV__tr|A0A7D6VY33|A0A7D6VY33_9CLOTTrypsin-likepeptidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19755PE=3SV=1	REV__tr|A0A7D6VY33|A0A7D6VY33_9CLOTTrypsin-likepeptidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19755PE=3SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	414.744911	827.475269	1.1335	0.00047011	-0.73679	-0.00030558	0.3967	0.00016453	414.7444445848083	84.63	1.0449	81.967	81.549	82.594	-2.6629	0.033429	-0.0005224	NaN	60.294	46	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178530	+		55686	31807	45979	46018							0.054629974944646165
SVTALAVILY	10	Unmodified	_SVTALAVILY_					0	0	0			REV__PCDHGC5|p.F741Lfs*3|1|0.71|ENSG00000240764|chr5:141491459-141491460|-/T|frameshift_variant	REV__PCDHGC5|p.F741Lfs*3|1|0.71|ENSG00000240764|chr5:141491459-141491460|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.3145751953125	2	525.3157	1048.61685	0.27098	0.00014235	1.6985	0.00089226	1.9695	0.0010346	525.3163064645563	124.21	0.44388	123.97	123.83	124.27	-0.23193					12	8	2	0	0	0	0.026982	1	12060	12060		23.042	5.6775	1	5149.3	+		55687	23441	45980	46019	60812	60812					0.09448370796940253
SVTDEMATF	9	Unmodified	_SVTDEMATF_					0	0	0			REV__tr|A0A553SUD3|A0A553SUD3_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_06710PE=3SV=1	REV__tr|A0A553SUD3|A0A553SUD3_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_06710PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	500.7183837890625	2	500.718233	999.421912	-0.58213	-0.00029148	1.7545	0.00087851	1.1724	0.00058703	500.7189261253765	39.568	7.3122	39.568	38.972	46.284	0					289	166	3	0	0	0	0.55588	1	2504	2504		37.159	5.2042	1	1705100	+		55688	31063	45981	46020	60813	60813					-0.07782168070355056
SVTDLAFKV	9	Unmodified	_SVTDLAFKV_					0	0	0		nc|ENSG00000061273|Q8WUI4-9|HDAC7;nc|ENSG00000061273|Q8WUI4-2|HDAC7;nc|ENSG00000061273|Q8WUI4-10|HDAC7;nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;ENST00000459625.5_1_12:48179068-48183703:-|nuORF;nc|ENSG00000061273|Q8WUI4-8|HDAC7	nc|ENSG00000061273|Q8WUI4-9|HDAC7	nc|ENSG00000061273|Q8WUI4-9|HDAC7	MULTI-MSMS	OvCa99_classI_Rep5	1	490.2777099609375	2	490.276575	978.538597	-1.5845	-0.00077685	0.026478	1.2982E-05	-1.558	-0.00076386	490.27652221792147	104.43	1.3791	104.43	104.11	105.49	0					86	31	5	0	0	0	0.014964	2	11716	11692;11716		153.04	73.585	1	15845000			55689	1268	45982	46021	60814;60815	60815					0.04846938211710494
SVTDLAFKV	9	Unmodified	_SVTDLAFKV_					0	0	0		nc|ENSG00000061273|Q8WUI4-9|HDAC7;nc|ENSG00000061273|Q8WUI4-2|HDAC7;nc|ENSG00000061273|Q8WUI4-10|HDAC7;nc|ENSG00000061273|Q8WUI4-3|HDAC7;nc|ENSG00000061273|Q8WUI4-4|HDAC7;nc|ENSG00000061273|Q8WUI4|HDAC7;nc|ENSG00000061273|Q8WUI4-7|HDAC7;nc|ENSG00000061273|Q8WUI4-6|HDAC7;ENSG00000061273|ENST00000080059|HDAC7;ENST00000459625.5_1_12:48179068-48183703:-|nuORF;nc|ENSG00000061273|Q8WUI4-8|HDAC7	nc|ENSG00000061273|Q8WUI4-9|HDAC7	nc|ENSG00000061273|Q8WUI4-9|HDAC7	MULTI-MATCH	OvCa9_classI_Rep2	2		2	490.276575	978.538597	0.01139	5.5842E-06	0.13382	6.5608E-05	0.14521	7.1192E-05	490.27644338951905	105.1	0.39441	104.66	104.46	104.85	-0.43642	0.11748	9.9677E-05	NaN	153.04	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9665.2			55690	1268	45982	46021							0.04846938211710494
SVTPTVYKV	9	Unmodified	_SVTPTVYKV_					0	0	0			REV__tr|A0A7D7A1B0|A0A7D7A1B0_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03350PE=3SV=1	REV__tr|A0A7D7A1B0|A0A7D7A1B0_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03350PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	497.78802490234375	2	497.2844	992.554247	1.4139	0.00070312	0.50144	0.00024936	1.9154	0.00095248	497.28359264950006	111.79	1.8717	110.68	110.2	112.07	-1.1038					75	37	5	0	0	0	0.38529	1	8155	8155		53.351	2.016	1	330780	+		55691	32481	45983	46022	60816	60816					0.05767224728754172
SVTQNISQN	9	Unmodified	_SVTQNISQN_					0	0	0			REV__nc|ENSG00000075292|Q14966-4|ZNF638	REV__nc|ENSG00000075292|Q14966-4|ZNF638	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.7648010253906	2	495.74617	989.477788	-0.79567	-0.00039445	0.50682	0.00025125	-0.28885	-0.0001432	495.74458079643443	28.663	0.69847	28.663	28.539	29.237	0					16	13	2	0	0	0	0.027425	1	976	976		60.118	10.677	1	26108	+		55692	16969	45984	46023	60817	60817					-0.017371988385320947
SVTQVTVEA	9	Unmodified	_SVTQVTVEA_					0	0	0		nc|ENSG00000099834|Q9HBB8-2|CDHR5;nc|ENSG00000099834|Q9HBB8-4|CDHR5;ENSG00000099834|ENST00000397542|CDHR5	nc|ENSG00000099834|Q9HBB8-2|CDHR5	nc|ENSG00000099834|Q9HBB8-2|CDHR5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.2649841308594	2	467.248015	932.481476	0.43199	0.00020185	0.17792	8.3135E-05	0.60992	0.00028498	467.248020410271	60.402	1.5319	56.972	56.553	58.084	-3.43					56	30	3	0	0	0	0.027232	1	4063	4063		56.721	3.3696	1	349010			55693	1982	45985	46024	60818	60818					0.012534709353417384
SVTSCLASLLT	11	Unmodified	_SVTSCLASLLT_					0	0	0		ENST00000261858.6_1_15:69561407-69561653:+|nuORF	ENST00000261858.6_1_15:69561407-69561653:+|nuORF	ENST00000261858.6_1_15:69561407-69561653:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.3283081054688	2	547.791732	1093.56891	-1.6445	-0.00090083	-3.4715	-0.0019017	-5.116	-0.0028025	547.7909344949019	95.655	0.35001	93.186	92.912	93.262	-2.4685					8	6	2	0	0	0	0.025453	1	8399	8399		52.937	5.2794	1	20886			55694	9875	45986	46025	60819	60819					0.025869288145713654
SVTTKDLL	8	Unmodified	_SVTTKDLL_					0	0	0			REV__ENST00000478009.1_1_1:202935608-202936333:-|nuORF	REV__ENST00000478009.1_1_1:202935608-202936333:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	437.8759460449219	2	438.755475	875.496398	1.1223	0.00049241	-1.3252	-0.00058144	-0.20291	-8.9026E-05	438.75490323836596	64.985	0.35521	64.985	64.834	65.19	0					14	8	2	0	0	0	0.028476	1	5921	5921		21.96	0	1	300010	+		55695	20611	45987	46026	60820	60820					0.05366962803316255
SVTTRALSP	9	Unmodified	_SVTTRALSP_					0	0	0		tr|A0A7D6VSD6|A0A7D6VSD6_9CLOTInorganicphosphatetransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_05310PE=4SV=1	tr|A0A7D6VSD6|A0A7D6VSD6_9CLOTInorganicphosphatetransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_05310PE=4SV=1	tr|A0A7D6VSD6|A0A7D6VSD6_9CLOTInorganicphosphatetransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_05310PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	466.2638854980469	2	466.263999	930.513445	-0.47853	-0.00022312	-0.28919	-0.00013484	-0.76772	-0.00035796	466.26368053004296	59.63	1.197	56.85	56.294	57.491	-2.7801					45	22	3	0	0	0	0.22621	1	4360	4360		71.877	0.58177	1	501960			55696	35017	45988	46027	60821	60821					0.04540883409140406
SVTTRALSP	9	Unmodified	_SVTTRALSP_					0	0	0		tr|A0A7D6VSD6|A0A7D6VSD6_9CLOTInorganicphosphatetransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_05310PE=4SV=1	tr|A0A7D6VSD6|A0A7D6VSD6_9CLOTInorganicphosphatetransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_05310PE=4SV=1	tr|A0A7D6VSD6|A0A7D6VSD6_9CLOTInorganicphosphatetransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_05310PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.2643737792969	2	466.263999	930.513445	0.33405	0.00015576	-1.4311	-0.00066728	-1.0971	-0.00051152	466.2631676719331	60.203	0.78593	56.773	56.309	57.095	-3.43					51	15	5	0	0	0	0.11471	1	4053	4053		93.195	10.955	1	2387300			55697	35017	45988	46027	60822	60822					0.04540883409140406
SVTVTRPRNIK	11	Unmodified	_SVTVTRPRNIK_					0	0	0			REV__chr11:62664973-62665123|414|10.98|0.0|20.07|-|1|LBHD1,None|1	REV__chr11:62664973-62665123|414|10.98|0.0|20.07|-|1|LBHD1,None|1	MULTI-MSMS	OvCa9_classI_Rep2	2	424.2570495605469	3	424.257849	1269.75172	-1.0833	-0.0004596	1.0427	0.00044237	-0.040602	-1.7226E-05	424.2582278417872	54.36	1.6434	51.546	51.275	52.918	-2.8139					88	32	4	0	0	0	0.71582	1	3750	3750		24.232	0.85391	1	452900	+		55698	15863	45989	46028	60823	60823					0.1276324399141231
SVVDIKLLL	9	Unmodified	_SVVDIKLLL_					0	0	0		ENST00000478085.5_1_22:40800171-40802852:+|nuORF;ENSG00000100359|ENST00000248929|SGSM3;nc|ENSG00000100359|Q96HU1-2|SGSM3	ENST00000478085.5_1_22:40800171-40802852:+|nuORF	ENST00000478085.5_1_22:40800171-40802852:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	500.3283996582031	2	500.326068	998.637583	1.8902	0.00094573	0.16937	8.4742E-05	2.0596	0.0010305	500.3260558024394	133.84	0.71158	133.84	133.53	134.24	0					27	14	2	0	0	0	0.55011	1	15569	15569		37.812	2.1932	1	176010			55699	2056	45990	46029	60824	60824					0.1382096117661149
SVVEPIVPNIK	11	Unmodified	_SVVEPIVPNIK_					0	0	0			REV__tr|A0A7D6ZIV5|A0A7D6ZIV5_9CLOTAspartateammonia-lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08580PE=4SV=1	REV__tr|A0A7D6ZIV5|A0A7D6ZIV5_9CLOTAspartateammonia-lyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08580PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	597.85595703125	2	597.858264	1193.70197	-2.4902	-0.0014888	-0.84145	-0.00050307	-3.3317	-0.0019919	597.8575960796461	144.35	4.0594	144.12	142.06	146.12	-0.22696					210	81	4	0	0	0	0.71191	1	14554	14554		25.574	0	1	136500	+		55700	32070	45991	46030	60825	60825					0.11287116262769814
SVVIGLFVLN	10	Unmodified	_SVVIGLFVLN_					0	0	0			REV__ENSG00000196172|ENST00000402377|ZNF681;REV__ENSG00000256771|ENST00000589717|ZNF253;REV__ENSG00000237440|ENST00000427401|ZNF737	REV__ENSG00000196172|ENST00000402377|ZNF681	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.767822265625	2	530.823692	1059.63283	-1.5929	-0.00084554	1.6038	0.00085133	0.010905	5.7887E-06	530.824219966411	99.432	0.97101	97.107	96.795	97.766	-2.3253					32	16	3	0	0	0	0.026956	1	8916	8916		19.997	0	1	62021	+		55701	22794;23538;23419	45992	46031	60826	60826					0.10540077033874695
SVVIGLFVLN	10	Unmodified	_SVVIGLFVLN_					0	0	0			REV__ENSG00000196172|ENST00000402377|ZNF681;REV__ENSG00000256771|ENST00000589717|ZNF253;REV__ENSG00000237440|ENST00000427401|ZNF737	REV__ENSG00000196172|ENST00000402377|ZNF681	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.823692	1059.63283	-1.0802	-0.00057342	0.88042	0.00046735	-0.19982	-0.00010607	530.8238640356963	98.157	0.78378	97.264	97.023	97.807	-0.89306	0.047724	0.00014664	NaN	25.574	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50865	+		55702	22794;23538;23419	45992	46031							0.10540077033874695
SVVIGLFVLN	10	Unmodified	_SVVIGLFVLN_					0	0	0			REV__ENSG00000196172|ENST00000402377|ZNF681;REV__ENSG00000256771|ENST00000589717|ZNF253;REV__ENSG00000237440|ENST00000427401|ZNF737	REV__ENSG00000196172|ENST00000402377|ZNF681	MULTI-MATCH	OvCa9_classI_Rep3	3		2	530.823692	1059.63283	-0.046931	-2.4912E-05	-0.015367	-8.1574E-06	-0.062298	-3.3069E-05	530.8234959139586	98.963	0.56345	97.278	97.061	97.624	-1.685	0.061624	-0.00080437	NaN	25.574	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68215	+		55703	22794;23538;23419	45992	46031							0.10540077033874695
SVVNVDQLW	9	Unmodified	_SVVNVDQLW_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-2|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-MSMS	OvCa99_classI_Rep5	1	530.2752685546875	2	530.277106	1058.53966	-0.29365	-0.00015571	-3.9218	-0.0020796	-4.2155	-0.0022354	530.27473176272	41.127	0.71231	41.127	40.838	41.55	0					27	15	4	0	0	0	0.35444	1	2550	2550		56.721	5.3856	1	542280			55704	8262	45993	46032	60827	60827					0.012731525806202626
SVVPLLRPV	9	Unmodified	_SVVPLLRPV_					0	0	0		ENST00000436441.5_3_9:135140278-135140341:-|nuORF	ENST00000436441.5_3_9:135140278-135140341:-|nuORF	ENST00000436441.5_3_9:135140278-135140341:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	490.31915283203125	2	490.318577	978.622602	0.99672	0.00048871	1.5323	0.00075132	2.529	0.00124	490.3189598638479	109.5	0.89255	109.5	109.19	110.09	0					51	19	4	0	0	0	0.42676	1	12407	12407		49.442	14.241	1	550870			55705	11876	45994	46033	60828	60828					0.13243514099281128
SVVPSRAAL	9	Unmodified	_SVVPSRAAL_					0	0	0			REV__ENSG00000166341|ENST00000299441|DCHS1	REV__ENSG00000166341|ENST00000299441|DCHS1	MULTI-MSMS	OvCa9_classI_Rep2	2	450.26947021484375	2	450.269084	898.523616	1.3254	0.0005968	-1.7002	-0.00076554	-0.37475	-0.00016874	450.2680012991639	61.146	3.3168	58.387	57.67	60.987	-2.7593					139	63	5	0	0	0	0.51865	1	4551	4551		40.778	0	1	6706400	+		55706	21178	45995	46034	60829	60829					0.07029491134358068
SVVSILGII	9	Unmodified	_SVVSILGII_					0	0	0		tr|A0A7D6ZWC6|A0A7D6ZWC6_9CLOTCobalttransportproteinCbiMOS=ClostridiumintestinaleOX=36845GN=cbiMPE=3SV=1	tr|A0A7D6ZWC6|A0A7D6ZWC6_9CLOTCobalttransportproteinCbiMOS=ClostridiumintestinaleOX=36845GN=cbiMPE=3SV=1	tr|A0A7D6ZWC6|A0A7D6ZWC6_9CLOTCobalttransportproteinCbiMOS=ClostridiumintestinaleOX=36845GN=cbiMPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.76104736328125	2	450.791861	899.569169	0.29329	0.00013221	1.1089	0.00049989	1.4022	0.0006321	450.79061646913493	62.861	0.53173	59.403	59.111	59.642	-3.4577					14	10	2	0	0	0	0.027433	1	4371	4371		30.504	6.3009	1	28135			55707	35836	45996	46035	60830	60830					0.11536716596765473
SVVWANLPQ	9	Unmodified	_SVVWANLPQ_					0	0	0		nc|ENSG00000148408|Q00975-2|CACNA1B;ENSG00000148408|ENST00000371372|CACNA1B;CACNA1B|p.K1835N|1|0.8|ENSG00000148408|chr9:138112474-138112474|G/T|missense_variant	nc|ENSG00000148408|Q00975-2|CACNA1B	nc|ENSG00000148408|Q00975-2|CACNA1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.75262451171875	2	507.274367	1012.53418	2.5517	0.0012944	1.7448	0.00088508	4.2964	0.0021795	507.77797626999757	86.739	0.29068	86.739	86.511	86.801	0					8	6	2	0	0	0	0.027402	1	9133	9133		56.721	0	1	121500			55708	5410	45997	46036	60831	60831					0.028414737887942465
SVWLGICISVL	11	Unmodified	_SVWLGICISVL_					0	0	0		ENST00000374148.1_1_10:50369150-50369267:-|nuORF	ENST00000374148.1_1_10:50369150-50369267:-|nuORF	ENST00000374148.1_1_10:50369150-50369267:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	595.3368530273438	2	595.33611	1188.65767	-2.0554	-0.0012237	3.5881	0.0021361	1.5327	0.00091246	595.3381573566538	149.58	1.2857	148.14	147.64	148.93	-1.4344					61	25	3	0	0	0	0.70865	1	14744	14744		26.693	1.1189	1	176250			55709	11025	45998	46037	60832	60832					0.07088388844908877
SVWLLRWWRV	10	Unmodified	_SVWLLRWWRV_					0	0	0		ENST00000396720.7_1_19:48206015-48206201:+|nuORF	ENST00000396720.7_1_19:48206015-48206201:+|nuORF	ENST00000396720.7_1_19:48206015-48206201:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.6036376953125	3	467.60318	1399.78771	-0.53423	-0.00024981	1.8517	0.00086584	1.3174	0.00061603	467.60392249960523	40.578	1.6107	37.623	37.112	38.723	-2.9541					84	30	4	0	0	0	0.77834	1	1763	1763		21.686	1.6553	1	365310			55710	11324	45999	46038	60833	60833					0.10380745958900661
SVYDGKLLI	9	Unmodified	_SVYDGKLLI_					0	0	0		nc|ENSG00000105854|Q15165-3|PON2;nc|ENSG00000105854|Q15165-1|PON2;ENSG00000105854|ENST00000222572|PON2	nc|ENSG00000105854|Q15165-3|PON2	nc|ENSG00000105854|Q15165-3|PON2	MULTI-MSMS	OvCa99_classI_Rep5	1	504.2938232421875	2	504.292225	1006.5699	0.041606	2.0981E-05	0.4704	0.00023722	0.51201	0.0002582	504.2923234370441	105.36	0.833	105.36	105	105.83	0					53	18	5	0	0	0	0.2784	1	11819	11819		65.465	10.689	1	2647600			55711	2507	46000	46039	60834	60834					0.06687511245809219
SVYGKLRKV	9	Unmodified	_SVYGKLRKV_					0	0	0		nc|ENSG00000172890|Q6IA69-2|NADSYN1;ENSG00000172890|ENST00000319023|NADSYN1;ENST00000531236.1_1_11:71196518-71209628:+|nuORF;ENST00000530831.1_1_11:71208417-71209628:+|nuORF	nc|ENSG00000172890|Q6IA69-2|NADSYN1	nc|ENSG00000172890|Q6IA69-2|NADSYN1	MULTI-MSMS	OvCa99_classI_Rep5	1	525.3258666992188	2	525.326934	1048.63931	-0.80515	-0.00042296	0.53045	0.00027866	-0.27469	-0.0001443	525.3270852973621	41.488	0.70045	41.488	41.24	41.94	0					44	15	4	0	0	0	0.37135	1	2591	2591		54.776	5.3348	1	1918500			55712	7326	46001	46040	60835	60835					0.11694014985209833
SVYGNKVK	8	Unmodified	_SVYGNKVK_					0	0	0			REV__SLC45A2|p.N280S|1|0.08|ENSG00000164175|chr5:33963740-33963740|T/C|missense_variant	REV__SLC45A2|p.N280S|1|0.08|ENSG00000164175|chr5:33963740-33963740|T/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	448.24969482421875	2	447.75581	893.497067	1.1477	0.00051391	1.7195	0.00076993	2.8673	0.0012838	447.7557797914009	63.341	0.42972	63.341	63.14	63.57	0					14	10	2	0	0	0	0.028476	1	5712	5712		29.15	0	1	190890	+		55713	29368	46002	46041	60836	60836					0.04605802243054313
SVYGYGVQK	9	Unmodified	_SVYGYGVQK_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.759765625	2	500.758549	999.502546	-0.081945	-4.1035E-05	-0.18177	-9.1024E-05	-0.26372	-0.00013206	500.7582951005033	60.194	1.1357	56.764	56.309	57.444	-3.43					62	22	4	0	0	0	0.19758	1	4061	4061		76.774	21.27	1	476660			55714	2591	46003	46042	60837	60837					0.002774810348682877
SVYGYGVQK	9	Unmodified	_SVYGYGVQK_					0	0	0		ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	ENSG00000107164|ENST00000319725|FUBP3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	500.758549	999.502546	-0.87791	-0.00043962	1.0077	0.00050462	0.1298	6.4997E-05	500.7589093446892	59.715	1.039	56.943	56.512	57.551	-2.7728	0.089371	0.00054009	NaN	76.774	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77557			55715	2591	46003	46042							0.002774810348682877
SVYLLKDAF	9	Unmodified	_SVYLLKDAF_					0	0	0		tr|A0A553SHV8|A0A553SHV8_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13685PE=3SV=1	tr|A0A553SHV8|A0A553SHV8_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13685PE=3SV=1	tr|A0A553SHV8|A0A553SHV8_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_13685PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	528.2936401367188	2	528.292225	1054.5699	-0.76897	-0.00040624	1.3846	0.00073147	0.61563	0.00032523	528.292811155303	25.432	0.55121	25.432	25.242	25.793	0					15	10	2	0	0	0	0.69123	1	571	571		20.947	2.6225	1	31942			55716	33317	46004	46043	60838	60838					0.044795112457904906
SVYVYKVLK	9	Unmodified	_SVYVYKVLK_					0	0	0		ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;nc|ENSG00000203814|Q5QNW6-2|H2BC18	ENSG00000278588|ENST00000377733|H2BC10	ENSG00000278588|ENST00000377733|H2BC10	MULTI-MSMS	OvCa9_classI_Rep2	2	549.8316040039062	2	549.831517	1097.64848	0.86182	0.00047385	-1.4462	-0.00079514	-0.58434	-0.00032129	549.8307322172435	71.602	2.3518	69.094	68.805	71.157	-2.5072					147	44	5	0	0	0	0.059253	7	5770	5764;5770;5777;5783;5789;5796;5802		113.41	56.978	1	2125300			55717	5948	46005	46044	60839;60840;60841;60842;60843;60844;60845	60840					0.10356363550886272
SVYVYKVLK	9	Unmodified	_SVYVYKVLK_					0	0	0		ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;nc|ENSG00000203814|Q5QNW6-2|H2BC18	ENSG00000278588|ENST00000377733|H2BC10	ENSG00000278588|ENST00000377733|H2BC10	MULTI-MSMS	OvCa9_classI_Rep3	3	549.8312377929688	2	549.831517	1097.64848	-0.21183	-0.00011647	-0.30295	-0.00016657	-0.51478	-0.00028304	549.8313655923452	71.768	2.0777	69.166	68.882	70.959	-2.6023					138	41	5	0	0	0	0.049969	6	3373	3367;3373;3378;3386;3392;3398		118.74	42.615	1	1292600			55718	5948	46005	46044	60846;60847;60848;60849;60850;60851	60847					0.10356363550886272
SVYVYKVLK	9	Unmodified	_SVYVYKVLK_					0	0	0		ENSG00000278588|ENST00000377733|H2BC10;ENSG00000277224|ENST00000356530|H2BC7;ENSG00000275713|ENST00000619466|H2BC9;ENSG00000274290|ENST00000614097|H2BC6;ENSG00000273802|ENST00000541790|H2BC8;ENSG00000273703|ENST00000621112|H2BC14;ENSG00000234289|ENST00000599962|H2BC12L;ENSG00000233822|ENST00000612898|H2BC15;ENSG00000203814|ENST00000369167|H2BC18;ENSG00000197903|ENST00000356950|H2BC12;ENSG00000185130|ENST00000377401|H2BC13;ENSG00000180596|ENST00000396984|H2BC4;ENSG00000158373|ENST00000377777|H2BC5;ENST00000469483.1_1_1:149775510-149783878:-|nuORF;nc|ENSG00000203814|Q5QNW6-2|H2BC18	ENSG00000278588|ENST00000377733|H2BC10	ENSG00000278588|ENST00000377733|H2BC10	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.8324584960938	2	549.831517	1097.64848	-1.4	-0.00076975	0.41745	0.00022953	-0.98253	-0.00054023	549.831714357195	72.769	2.3077	69.373	69.107	71.415	-3.3961					150	47	5	0	0	0	0.14998	6	5605	5605;5617;5629;5642;5654;5668		84.916	30.139	1	2331100			55719	5948	46005	46044	60852;60853;60854;60855;60856;60857	60852					0.10356363550886272
SWDRWLSGRAQ	11	Unmodified	_SWDRWLSGRAQ_					0	0	0		tr|A0A7D6ZN53|A0A7D6ZN53_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14730PE=4SV=1	tr|A0A7D6ZN53|A0A7D6ZN53_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14730PE=4SV=1	tr|A0A7D6ZN53|A0A7D6ZN53_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14730PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	453.7754211425781	3	454.56182	1360.66363	0.55573	0.00025261	4.247	0.0019305	4.8027	0.0021831	454.56353985053346	57.232	0.56075	53.887	53.679	54.24	-3.3449					18	10	2	0	0	0	0.025908	1	3693	3693		27.644	9.1129	1	35767			55720	35673	46006	46045	60858	60858					-0.002273765991731125
SWDRWLSGRAQ	11	Unmodified	_SWDRWLSGRAQ_					0	0	0		tr|A0A7D6ZN53|A0A7D6ZN53_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14730PE=4SV=1	tr|A0A7D6ZN53|A0A7D6ZN53_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14730PE=4SV=1	tr|A0A7D6ZN53|A0A7D6ZN53_9CLOTO-antigenligasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14730PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	454.56182	1360.66363	0.71088	0.00032314	3.929	0.001786	4.6399	0.0021091	454.8979481420954	56.5	0.39631	53.696	53.473	53.87	-2.804	-0.095483	-0.00026871	NaN	27.644	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14827			55721	35673	46006	46045							-0.002273765991731125
SWFPSILTAV	10	Unmodified	_SWFPSILTAV_					0	0	0		nc|ENSG00000170190|O15375-2|SLC16A5;ENSG00000170190|ENST00000329783|SLC16A5;SLC16A5|p.T222Pfs*82|1|0.07|ENSG00000170190|chr17:75100325-75100326|-/CCCA|frameshift_variant;SLC16A5|p.A144Gfs*56|1|0.28|ENSG00000170190|chr17:75100091-75100092|-/C|frameshift_variant	nc|ENSG00000170190|O15375-2|SLC16A5	nc|ENSG00000170190|O15375-2|SLC16A5	MULTI-MSMS	OvCa9_classI_Rep3	3	560.8045654296875	2	560.8055	1119.59645	0.74762	0.00041927	-3.7855	-0.0021229	-3.0378	-0.0017036	560.8032406363295	113.08	1.9194	112.01	111.66	113.58	-1.0753					84	37	3	0	0	0	0.64063	1	8282	8282		37.159	5.6293	1	455470			55722	7081	46007	46046	60859	60859					0.04143200137150416
SWGLLGAPIQ	10	Unmodified	_SWGLLGAPIQ_					0	0	0		ENSG00000101997|ENST00000376227|CCDC22	ENSG00000101997|ENST00000376227|CCDC22	ENSG00000101997|ENST00000376227|CCDC22	MSMS	OvCa9_classI_Rep3	3	521.291015625	2	521.290017	1040.56548	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.85	1	124.8	124.3	125.3	-1.0519								0	0	0	0.1438	1	9806	9806		35.618	1.4457	1				55723	2214	46008	46047	60860	60860					0.0468204682290434
SWKQLRGRWRR	11	Unmodified	_SWKQLRGRWRR_					0	0	0		ENST00000525546.5_1_1:26759017-26759095:+|nuORF;ENST00000525326.5_1_1:26759017-26759412:+|nuORF	ENST00000525546.5_1_1:26759017-26759095:+|nuORF	ENST00000525546.5_1_1:26759017-26759095:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.2607421875	3	510.29552	1527.86473	-0.47979	-0.00024483	1.9873	0.0010141	1.5075	0.00076927	510.2964648444339	24.964	0.45592	24.964	24.586	25.042	0					11	8	2	0	0	0	0.026321	1	505	505		20.03	9.9266	1	17568			55724	13189	46009	46048	60861	60861					0.12191357227948174
SWLAVPVVL	9	Unmodified	_SWLAVPVVL_					0	0	0			REV__ENST00000338144.7_1_X:129843302-129917646:-|nuORF	REV__ENST00000338144.7_1_X:129843302-129917646:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.7650451660156	2	492.299853	982.585153	1.1811	0.00058148	-2.1978	-0.001082	-1.0167	-0.00050051	492.2983089552773	101.31	0.41959	101.31	101.11	101.53	0					18	9	3	0	0	0	0.027462	1	11281	11281		19.36	0	1	438080	+		55725	24605	46010	46049	60862	60862					0.09316422833660454
SWLGSRPQMCP	11	Unmodified	_SWLGSRPQMCP_					0	0	0		ENST00000543714.5_1_11:73689377-73689479:-|nuORF	ENST00000543714.5_1_11:73689377-73689479:-|nuORF	ENST00000543714.5_1_11:73689377-73689479:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	421.69842529296875	3	421.198726	1260.57435	-0.6535	-0.00027525	1.1707	0.0004931	0.5172	0.00021784	421.1986755852309	44.238	0.22675	44.238	44.123	44.35	0					6	4	2	0	0	0	0.026145	1	2965	2965		23.378	11.742	1	68980			55726	13497	46011	46050	60863	60863					-0.045516708745708456
SWLLLMWL	8	Unmodified	_SWLLLMWL_					0	0	0			REV__ENSG00000169436|ENST00000303045|COL22A1	REV__ENSG00000169436|ENST00000303045|COL22A1	MULTI-MSMS	OvCa99_classI_Rep5	1	531.298583984375	2	531.296256	1060.57796	0.84042	0.00044651	3.4692	0.0018432	4.3096	0.0022897	531.298284847237	151.5	0.59395	151.5	151.15	151.74	0					16	11	2	0	0	0	0.59103	1	17740	17740		65.897	5.6035	1	49596	+		55727	21463	46012	46051	60864	60864					0.05009366961576234
SWPDWALPRL	10	Unmodified	_SWPDWALPRL_					0	0	0		ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	MULTI-MSMS	OvCa99_classI_Rep5	1	620.8285522460938	2	620.827298	1239.64004	0.61568	0.00038223	1.4712	0.00091335	2.0869	0.0012956	620.8281473342133	142.26	1.4807	142.26	141.79	143.27	0					88	29	5	0	0	0	0.19075	3	16610	16610;16634;16658		95.815	39.381	1	1775700			55728	5606	46013	46052	60865;60866;60867	60865					0.029808096342549106
SWRMRKRRRRR	11	Unmodified	_SWRMRKRRRRR_					0	0	0		ENST00000487093.5_1_3:51575631-51661706:+|nuORF	ENST00000487093.5_1_3:51575631-51661706:+|nuORF	ENST00000487093.5_1_3:51575631-51661706:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	548.6614990234375	3	548.66232	1642.96513	1.7117	0.00093914	-3.5818	-0.0019652	-1.8701	-0.0010261	548.6603217401062	77.684	0.59156	77.684	77.461	78.053	0					43	13	4	0	0	0	0.72582	1	7854	7854		0.3405	0.3405	1	2565400			55729	12635	46014	46053	60868	60868					0.1693669100995976
SWSPSPVPKI	10	Unmodified	_SWSPSPVPKI_					0	0	0			REV__ENSG00000079387|ENST00000549518|SENP1	REV__ENSG00000079387|ENST00000549518|SENP1	MULTI-MSMS	OvCa99_classI_Rep5	1	549.3035888671875	2	549.303124	1096.5917	1.5765	0.00086599	-0.30041	-0.00016501	1.2761	0.00070098	549.3028360648387	129.57	0.84302	129.57	129.31	130.15	0					26	17	2	0	0	0	0.37436	1	15018	15018		71.877	3.0906	1	653380	+		55730	17042	46015	46054	60869	60869					0.04726315994366814
SWTPFPPDL	9	Unmodified	_SWTPFPPDL_					0	0	0		ENST00000497675.2_1_1:2125076-2125544:-|nuORF;ENST00000476803.1_1_1:2121150-2125598:-|nuORF;nc|ENSG00000162585|Q6NZ36-5|FAAP20;ENSG00000162585|ENST00000378546|FAAP20;nc|ENSG00000162585|Q6NZ36-4|FAAP20;nc|ENSG00000162585|Q6NZ36-3|FAAP20;ENST00000401813.7_1_1:2121150-2129708:-|nuORF;nc|ENSG00000162585|Q6NZ36-2|FAAP20;ENST00000487186.5_1_1:2121150-2130436:-|nuORF	ENST00000497675.2_1_1:2125076-2125544:-|nuORF	ENST00000497675.2_1_1:2125076-2125544:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	530.2623291015625	2	530.260925	1058.5073	1.3843	0.00073402	0.85597	0.00045389	2.2402	0.0011879	530.2613416701934	90.796	2.9926	90.796	90.143	93.136	0					230	72	6	0	0	0	0.48324	1	9827	9827		44.117	2.6902	1	64525000			55731	6196	46016	46055	60870	60870					-0.019616348223962632
SWVLFIIEQ	9	Unmodified	_SWVLFIIEQ_					0	0	0			REV__nc|ENSG00000053900|Q9UJX5-2|ANAPC4	REV__nc|ENSG00000053900|Q9UJX5-2|ANAPC4	MULTI-MSMS	OvCa9_classI_Rep2	2	567.8104248046875	2	567.813325	1133.6121	0.22441	0.00012742	-4.0501	-0.0022997	-3.8256	-0.0021722	567.8109861589273	113.4	1.1856	113.27	112.82	114.01	-0.12174					56	23	3	0	0	0	0.55588	1	10750	10750		37.159	1.5408	1	241960	+		55732	16696	46017	46056	60871	60871					0.050634866541713563
SWWLWASH	8	Unmodified	_SWWLWASH_					0	0	0		ENST00000589225.5_1_17:76793374-76793617:-|nuORF	ENST00000589225.5_1_17:76793374-76793617:-|nuORF	ENST00000589225.5_1_17:76793374-76793617:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.2965087890625	2	536.753601	1071.49265	0.37957	0.00020373	4.2117	0.0022607	4.5913	0.0024644	536.7558852147871	76.421	0.57541	74.049	73.825	74.4	-2.3715					17	10	2	0	0	0	0.028476	1	3937	3937		60.294	7.3573	1	17918			55733	14086	46018	46057	60872	60872					-0.04023662179884013
SYADNILSF	9	Unmodified	_SYADNILSF_					0	0	0		WDR11|p.T355Nfs*14|1|0.32|ENSG00000120008|chr10:120866632-120866633|-/A|frameshift_variant;ENSG00000120008|ENST00000263461|WDR11	WDR11|p.T355Nfs*14|1|0.32|ENSG00000120008|chr10:120866632-120866633|-/A|frameshift_variant	WDR11|p.T355Nfs*14|1|0.32|ENSG00000120008|chr10:120866632-120866633|-/A|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	515.2490234375	2	515.248015	1028.48148	1.7377	0.00089537	2.4007	0.001237	4.1385	0.0021323	515.2483851879024	136.4	0.56732	136.4	136.16	136.73	0					25	11	3	0	0	0	0.16562	1	15902	15902		82.241	7.9855	1	174320			55734	3411	46019	46058	60873	60873					-0.03162529064661612
SYADQMFLL	9	Unmodified	_SYADQMFLL_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	OvCa99_classI_Rep5	1	544.2616577148438	2	544.260068	1086.50558	1.2021	0.00065424	-1.1919	-0.00064873	0.010128	5.512E-06	544.2592446117724	149.9	1.0937	149.9	149.55	150.64	0					60	21	4	0	0	0	0.019133	1	17551	17551		148.04	68.592	1	810540			55735	2130	46020	46059	60874	60874					-0.034210119026511165
SYAFRKPI	8	Unmodified	_SYAFRKPI_					0	0	0		tr|A0A7D6VRZ0|A0A7D6VRZ0_9CLOTPTSsugartransportersubunitIICOS=ClostridiumintestinaleOX=36845GN=HZF06_04030PE=4SV=1	tr|A0A7D6VRZ0|A0A7D6VRZ0_9CLOTPTSsugartransportersubunitIICOS=ClostridiumintestinaleOX=36845GN=HZF06_04030PE=4SV=1	tr|A0A7D6VRZ0|A0A7D6VRZ0_9CLOTPTSsugartransportersubunitIICOS=ClostridiumintestinaleOX=36845GN=HZF06_04030PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	491.2764587402344	2	491.279452	980.544351	-0.28614	-0.00014057	-3.9457	-0.0019384	-4.2318	-0.002079	491.2773086839078	48.84	1.1389	46.079	45.779	46.918	-2.7603					48	22	3	0	0	0	0.73288	1	3073	3073		35.201	3.2459	1	137360			55736	34968	46021	46060	60875	60875					0.053300815140460145
SYAKSTQRF	9	Unmodified	_SYAKSTQRF_					0	0	0		ENST00000430580.6_1_1:16939836-16939869:-|nuORF	ENST00000430580.6_1_1:16939836-16939869:-|nuORF	ENST00000430580.6_1_1:16939836-16939869:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	544.2800903320312	2	544.28018	1086.54581	-0.55298	-0.00030097	-0.40005	-0.00021774	-0.95302	-0.00051871	544.2799696691053	36.007	1.4984	36.007	35.661	37.159	0					76	32	5	0	0	0	0.24899	2	1854	1854;1877		68.846	10.381	1	11768000			55737	11790	46022	46061	60876;60877	60876					0.005996708121301708
SYANKKLR	8	Unmodified	_SYANKKLR_					0	0	0		ENST00000417647.6_1_5:140031695-140032611:+|nuORF	ENST00000417647.6_1_5:140031695-140032611:+|nuORF	ENST00000417647.6_1_5:140031695-140032611:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.72442626953125	2	490.287808	978.561064	-0.42216	-0.00020698	0.69423	0.00034037	0.27207	0.00013339	490.2878651571097	40.852	0.34809	40.852	40.666	41.014	0					17	7	3	0	0	0	0.028476	1	2484	2484		16.473	0	1	116740			55738	11624	46023	46062	60878	60878					0.07092582399991443
SYAPRHVTL	9	Unmodified	_SYAPRHVTL_					0	0	0		SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant;nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant	SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	522.2835083007812	2	522.285266	1042.55598	-0.92881	-0.0004851	1.882	0.00098292	0.95314	0.00049781	522.2856465601398	54.896	0.51456	54.896	54.718	55.233	0					20	11	3	0	0	0	0.18887	1	4460	4460		78.264	17.292	1	1968800			55739	1794	46024	46063	60879	60879					0.03640278537386621
SYAPRHVTL	9	Unmodified	_SYAPRHVTL_					0	0	0		SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant;nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant	SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	522.285266	1042.55598	-0.5844	-0.00030522	0.64166	0.00033513	0.057262	2.9907E-05	522.2850725627725	58.474	1.2585	55.082	54.244	55.502	-3.392	0.09292	-0.00041922	NaN	78.264	41	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128690			55740	1794	46024	46063							0.03640278537386621
SYATLLHVL	9	Unmodified	_SYATLLHVL_					0	0	0		ENSG00000183840|ENST00000329321|GPR39	ENSG00000183840|ENST00000329321|GPR39	ENSG00000183840|ENST00000329321|GPR39	MULTI-MSMS	OvCa99_classI_Rep5	1	508.7935791015625	2	508.792392	1015.57023	1.4269	0.00072598	0.2502	0.0001273	1.6771	0.00085328	508.7924285060792	119.11	0.65195	119.11	118.81	119.47	0					29	13	3	0	0	0	0.048552	1	13674	13674		119.56	42.71	1	563360			55741	8117	46025	46064	60880	60880					0.06306930965638458
SYCGPAILRF	10	Unmodified	_SYCGPAILRF_					0	0	0		ENSG00000198570|ENST00000680073|RD3	ENSG00000198570|ENST00000680073|RD3	ENSG00000198570|ENST00000680073|RD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.3302001953125	2	563.789327	1125.5641	0.4315	0.00024327	-4.1845	-0.0023591	-3.753	-0.0021159	563.7867461331418	45.032	0.45063	45.032	44.795	45.245	0					22	9	3	0	0	0	0.026871	1	3072	3072		29.15	0	1	370860			55742	8830	46026	46065	60881	60881					0.006340894624827342
SYCLMENPPE	10	Unmodified	_SYCLMENPPE_					0	0	0		ENST00000591806.5_1_19:1377879-1378284:+|nuORF	ENST00000591806.5_1_19:1377879-1378284:+|nuORF	ENST00000591806.5_1_19:1377879-1378284:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	591.7481689453125	2	591.743924	1181.4733	2.4722	0.0014629	2.3491	0.00139	4.8213	0.002853	591.7453287070273	116.3	0.54669	116.3	116	116.55	0					31	11	4	0	0	0	0.44431	1	13301	13301		62.107	5.3864	1	755640			55743	14125	46027	46066	60882	60882					-0.11018167367956266
SYDPLRIYLF	10	Unmodified	_SYDPLRIYLF_					0	0	0		ENSG00000135912|ENST00000392102|TTLL4;ENST00000465558.5_1_2:219610891-219612857:+|nuORF;ENST00000480929.1_1_2:219612227-219612548:+|nuORF	ENSG00000135912|ENST00000392102|TTLL4	ENSG00000135912|ENST00000392102|TTLL4	MULTI-MSMS	OvCa99_classI_Rep5	1	643.844482421875	2	643.842613	1285.67067	1.4625	0.00094159	0.89846	0.00057847	2.3609	0.0015201	643.8430136009603	144.6	1.1001	144.6	144.26	145.36	0					65	22	4	0	0	0	0.55109	2	16892	16892;16917		47.96	7.1814	1	845680			55744	4426	46028	46067	60883;60884	60883					0.039265432286583746
SYDRYIEY	8	Unmodified	_SYDRYIEY_					0	0	0			REV__ENSG00000147799|ENST00000377307|ARHGAP39	REV__ENSG00000147799|ENST00000377307|ARHGAP39	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.8449096679688	2	554.750921	1107.48729	-0.11352	-6.2977E-05	-2.0642	-0.0011451	-2.1778	-0.0012081	554.7496678307702	50.887	0.90023	50.887	50.685	51.585	0					29	20	2	0	0	0	0.028476	1	3877	3877		25.45	8.0852	1	279210	+		55745	20083	46029	46068	60885	60885					-0.06215430552992984
SYEKVEFAL	9	Unmodified	_SYEKVEFAL_					0	0	0			REV__ENST00000263893.10_1_1:95710269-95712423:+|nuORF	REV__ENST00000263893.10_1_1:95710269-95712423:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	543.2805786132812	2	543.279315	1084.54408	3.175	0.0017249	-0.49837	-0.00027075	2.6766	0.0014542	543.2787716913812	97.437	1.1545	97.437	97.093	98.247	0					70	26	4	0	0	0	0.38969	1	10688	10688		52.937	1.6012	1	2991000	+		55746	18598	46030	46069	60886	60886					0.005186170035358373
SYELFCNVF	9	Carbamidomethyl (C)	_SYELFC(Carbamidomethyl (C))NVF_	SYELFC(1)NVF		SYELFC(82)NVF		0	1	0		SLC25A19|p.F305L|1|0.15|ENSG00000125454|chr17:75273501-75273501|A/G|missense_variant	SLC25A19|p.F305L|1|0.15|ENSG00000125454|chr17:75273501-75273501|A/G|missense_variant	SLC25A19|p.F305L|1|0.15|ENSG00000125454|chr17:75273501-75273501|A/G|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	589.765869140625	2	589.762975	1177.5114	1.938	0.001143	3.139	0.0018513	5.077	0.0029942	589.764697541358	134.21	0.94995	134.21	133.86	134.81	0					55	20	5	0	0	0	0.16562	1	15620	15620		82.241	10.363	1	1740200			55747	32823	46031	46070	60887	60887	374				-0.0702591339099854
SYESRVTHI	9	Unmodified	_SYESRVTHI_					0	0	0		ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	ENSG00000118193|ENST00000367350|KIF14	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2767333984375	2	546.277638	1090.54072	1.5426	0.00084267	-2.6863	-0.0014674	-1.1437	-0.00062477	546.2777809064199	127.5	1.9096	127.5	126.13	128.04	0					67	41	3	0	0	0	0.027461	1	14758	14758		40.778	10.275	1	1118900			55748	3293	46032	46071	60888	60888					-0.0009263305046260939
SYFLHNTIN	9	Unmodified	_SYFLHNTIN_					0	0	0		ENST00000324324.11_1_15:48434513-48434618:-|nuORF	ENST00000324324.11_1_15:48434513-48434618:-|nuORF	ENST00000324324.11_1_15:48434513-48434618:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.8082885742188	2	554.774731	1107.53491	2.3142	0.0012839	0.11194	6.2099E-05	2.4262	0.001346	554.7750172893553	98.04	0.81065	98.04	97.479	98.29	0					29	18	2	0	0	0	0.027462	1	10714	10714		14.137	0	1	626900			55749	10395	46033	46072	60889	60889					-0.014557315621232192
SYFLHNTIN	9	Unmodified	_SYFLHNTIN_					0	0	0		ENST00000324324.11_1_15:48434513-48434618:-|nuORF	ENST00000324324.11_1_15:48434513-48434618:-|nuORF	ENST00000324324.11_1_15:48434513-48434618:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	554.774731	1107.53491	-0.8073	-0.00044787	-4.2822	-0.0023757	-5.0895	-0.0028235	554.7723767001594	99.54	0.62227	97.855	97.574	98.196	-1.685	-0.0084445	-0.0031367	NaN	26.693	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13781			55750	10395	46033	46072							-0.014557315621232192
SYFLHNTIN	9	Unmodified	_SYFLHNTIN_					0	0	0		ENST00000324324.11_1_15:48434513-48434618:-|nuORF	ENST00000324324.11_1_15:48434513-48434618:-|nuORF	ENST00000324324.11_1_15:48434513-48434618:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	554.774731	1107.53491	-0.66732	-0.00037021	-2.9507	-0.001637	-3.618	-0.0020072	555.274732298297	100.02	0.96808	97.695	97.108	98.076	-2.3253	-0.1681	-0.0016593	NaN	26.693	23	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14220			55751	10395	46033	46072							-0.014557315621232192
SYFLLGMIN	9	Unmodified	_SYFLLGMIN_					0	0	0		tr|A0A553ST80|A0A553ST80_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_04450PE=4SV=1	tr|A0A553ST80|A0A553ST80_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_04450PE=4SV=1	tr|A0A553ST80|A0A553ST80_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_04450PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.2736206054688	2	529.272978	1056.5314	0.74888	0.00039636	-2.5594	-0.0013546	-1.8106	-0.00095828	529.2714728579186	151.47	0.53986	151.47	151.25	151.79	0					18	10	3	0	0	0	0.55588	1	17758	17758		37.159	2.0071	1	64207			55752	34467	46034	46073	60890	60890					0.0053988233964901156
SYFPTVPGVYI	11	Unmodified	_SYFPTVPGVYI_					0	0	0		FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant;FLNB|p.S2513Rfs*5|1|0.04|ENSG00000136068|chr3:58169710-58169711|-/GATTC|frameshift_variant;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;nc|ENSG00000136068|O75369-7|FLNB;ENST00000481470.5_1_3:58118395-58154450:+|nuORF;ENST00000477629.1_1_3:58135593-58136214:+|nuORF	FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant;ENST00000477629.1_1_3:58135593-58136214:+|nuORF	FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	622.3289794921875	2	621.823889	1241.63323	0.8153	0.00050697	-0.027335	-1.6998E-05	0.78796	0.00048997	621.824078584522	155.35	0.60988	155.35	155.02	155.63	0					19	11	2	0	0	0	0.60323	1	18193	18193		44.377	10.205	1	176220			55753	4455;12480	46035	46074	60891	60891					0.02207451963067797
SYFSFWWWWWK	11	Unmodified	_SYFSFWWWWWK_					0	0	0		ENST00000300134.7_1_12:57504946-57505147:-|nuORF	ENST00000300134.7_1_12:57504946-57505147:-|nuORF	ENST00000300134.7_1_12:57504946-57505147:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.289306640625	3	570.262712	1707.76631	0.47806	0.00027262	1.4169	0.00080801	1.895	0.0010806	570.5977732663031	45.731	0.30744	45.731	45.582	45.89	0					9	6	2	0	0	0	0.026562	1	3194	3194		0.3405	0.3405	1	141910			55754	10170	46036	46075	60892	60892					-0.0592668386045716
SYGDILHVI	9	Unmodified	_SYGDILHVI_					0	0	0		ENST00000466140.5_1_X:69698992-69715274:+|nuORF;nc|ENSG00000082458|Q92796-3|DLG3;nc|ENSG00000082458|Q92796-2|DLG3;ENSG00000082458|ENST00000374360|DLG3	ENST00000466140.5_1_X:69698992-69715274:+|nuORF	ENST00000466140.5_1_X:69698992-69715274:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	508.7754211425781	2	508.7742	1015.53385	1.8148	0.00092331	-0.034787	-1.7699E-05	1.78	0.00090561	508.774155281029	120.07	0.73197	120.07	119.74	120.47	0					52	17	5	0	0	0	0.0073143	3	13792	13767;13792;13822		183.89	73.557	1	5733700			55755	1679	46037	46076	60893;60894;60895	60894					0.02670054068948957
SYGKINILL	9	Unmodified	_SYGKINILL_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MSMS	OvCa99_classI_Rep5	1	510.80999755859375	2	510.808042	1019.60153	2.1301	0.0010881	0.19495	9.958E-05	2.3251	0.0011877	510.8078075422146	108.4	1.1712	108.4	108.2	109.37	0					43	26	3	0	0	0	0.2422	1	12254	12254		69.628	3.1983	1	803720			55756	2891	46038	46077	60896	60896					0.09251503999746546
SYGKINILL	9	Unmodified	_SYGKINILL_					0	0	0		ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	ENSG00000112249|ENST00000369162|ASCC3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	510.808042	1019.60153	0.055718	2.8461E-05	-1.1847	-0.00060518	-1.129	-0.00057672	510.8067241502838	108.73	0.24718	108.51	108.32	108.57	-0.22498	0.052258	-0.0012655	NaN	69.628	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8104.5			55757	2891	46038	46077							0.09251503999746546
SYGSFSDAVLE	11	Unmodified	_SYGSFSDAVLE_					0	0	0		nc|ENSG00000167723|Q8NET8-3|TRPV3;ENSG00000167723|ENST00000576742|TRPV3;nc|ENSG00000167723|Q8NET8-2|TRPV3	nc|ENSG00000167723|Q8NET8-3|TRPV3	nc|ENSG00000167723|Q8NET8-3|TRPV3	MULTI-MSMS	OvCa99_classI_Rep5	1	587.7703857421875	2	587.766768	1173.51898	1.7184	0.00101	0.57846	0.00034	2.2968	0.00135	587.7668721405208	128.13	0.56093	128.13	127.9	128.47	0					26	11	3	0	0	0	0.48738	1	14843	14843		54.776	1.6874	1	179270			55758	6838	46039	46078	60897	60897					-0.06083482589724554
SYGSVFKAI	9	Unmodified	_SYGSVFKAI_					0	0	0		STK3-NIPAL2|1|fusion;STK3-NIPAL2|3|fusion;STK3-NIPAL2|2|fusion;ENSG00000104375|ENST00000419617|STK3;STK3-NIPAL2|4|fusion;nc|ENSG00000104375|Q13188-2|STK3;STK3-NIPAL2|6|fusion;STK3-NIPAL2|5|fusion	STK3-NIPAL2|1|fusion	STK3-NIPAL2|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	486.2643737792969	2	486.263468	970.512382	1.5652	0.00076111	0.56206	0.00027331	2.1273	0.0010344	486.26355319984873	93.208	0.62245	93.208	92.926	93.549	0					45	14	4	0	0	0	0.035142	1	10091	10091		131.03	45.672	1	3918800			55759	32925	46040	46079	60898	60898					0.025946690402406603
SYGVACPIQI	10	Unmodified	_SYGVACPIQI_					0	0	0			REV__nc|ENSG00000141338|O94911-1|ABCA8	REV__nc|ENSG00000141338|O94911-1|ABCA8	MULTI-MSMS	OvCa99_classI_Rep5	1	525.7701416015625	2	525.76806	1049.52157	2.0565	0.0010812	1.4716	0.0007737	3.5281	0.0018549	525.7686793960095	91.69	1.4143	91.69	91.057	92.472	0					64	33	3	0	0	0	0.39172	1	9895	9895		69.628	5.4204	1	2673100	+		55760	19728	46041	46080	60899	60899					-0.001213056657661582
SYIAGILHAL	10	Unmodified	_SYIAGILHAL_					0	0	0		ENSG00000233412|ENST00000641450|OR5H15	ENSG00000233412|ENST00000641450|OR5H15	ENSG00000233412|ENST00000641450|OR5H15	MULTI-MSMS	OvCa99_classI_Rep5	1	529.3067626953125	2	529.305667	1056.59678	2.1977	0.0011633	-0.74263	-0.00039308	1.4551	0.00077019	529.3051538158101	74.939	1.7213	74.939	74.478	76.199	0					127	42	5	0	0	0	0.45225	1	7475	7475		60.972	7.6205	1	17099000			55761	9294	46042	46081	60900	60900					0.07074619856962272
SYIAHLRQL	9	Unmodified	_SYIAHLRQL_					0	0	0		ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	ENSG00000178860|ENST00000325509|MSC	MULTI-MSMS	OvCa99_classI_Rep5	1	550.8158569335938	2	550.81419	1099.61383	-1.0949	-0.00060309	0.958	0.00052768	-0.1369	-7.5409E-05	550.8146371123157	70.231	0.88293	70.231	69.798	70.681	0					55	21	4	0	0	0	0.045281	1	6725	6725		122.18	0	1	5791400			55762	7782	46043	46082	60901	60901					0.06800540462791105
SYIALPLTL	9	Unmodified	_SYIALPLTL_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENST00000573635.1_1_16:16381587-16388153:+|nuORF;ENST00000566823.1_1_16:14982940-14989499:+|nuORF	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-MSMS	OvCa99_classI_Rep5	1	495.79876708984375	2	495.797143	989.579734	0.67246	0.00033341	1.2566	0.00062301	1.929	0.00095641	495.7976645983828	158.43	1.0934	158.43	158.19	159.28	0					46	22	3	0	0	0	0.50149	1	18559	18559		42.396	5.3677	1	443310			55763	2296	46044	46083	60902	60902					0.0845269925117691
SYIDLLQRF	9	Unmodified	_SYIDLLQRF_					0	0	0		ENSG00000127580|ENST00000293883|WDR24	ENSG00000127580|ENST00000293883|WDR24	ENSG00000127580|ENST00000293883|WDR24	MULTI-MSMS	OvCa99_classI_Rep5	1	577.8135375976562	2	577.813856	1153.61316	1.5552	0.00089861	0.62058	0.00035858	2.1758	0.0012572	577.8140389565394	133.61	0.84816	133.61	133.4	134.24	0					42	17	4	0	0	0	0.14855	2	15536	15536;15561		85.161	33.968	1	707360			55764	3840	46045	46084	60903;60904	60903					0.04249701023104535
SYIDVAVKL	9	Unmodified	_SYIDVAVKL_					0	0	0		ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	ENSG00000087301|ENST00000281741|TXNDC16	MULTI-MSMS	OvCa99_classI_Rep5	1	504.2935791015625	2	504.292225	1006.5699	1.5012	0.00075703	0.76259	0.00038457	2.2638	0.0011416	504.2924748392782	109.93	1.3887	109.93	109.64	111.02	0					80	30	4	0	0	0	0.018335	2	12472	12452;12472		148.99	50.691	1	3948200			55765	1771	46046	46085	60905;60906	60906					0.06687511245809219
SYIEHIFE	8	Unmodified	_SYIEHIFE_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	OvCa99_classI_Rep5	1	519.2515258789062	2	519.250557	1036.48656	2.0043	0.0010407	0.26144	0.00013575	2.2657	0.0011765	519.2506099097113	100.6	1.4134	100.6	100.19	101.61	0					78	33	4	0	0	0	0.32444	1	11141	11141		102.77	36.344	1	7576100			55766	6223	46047	46086	60907	60907					-0.03022225202039408
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	OvCa99_classI_Rep5	1	575.7943115234375	2	575.792589	1149.57063	1.3757	0.00079213	-1.2306	-0.00070858	0.14511	8.3551E-05	575.7926516207641	127.25	6.2749	127.25	125.49	131.76	0					413	134	6	0	0	0	0.0071018	12	14818	14710;14734;14782;14818;14848;14872;14896;14920;14947;14969;14992;15016		221.53	94.072	1	222820000			55767	6223	46048	46087	60908;60909;60910;60911;60912;60913;60914;60915;60916;60917;60918;60919	60911					0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MATCH	OvCa9_classI_Rep2	2		2	575.792589	1149.57063	0.24664	0.00014201	-0.68421	-0.00039396	-0.43757	-0.00025195	575.7922530321812	127.49	0.49449	127.26	127.08	127.58	-0.2359	-0.12848	0.00032203	NaN	221.53	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13865			55768	6223	46048	46087							0.0018230589485028759
SYIEHIFEI	9	Unmodified	_SYIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	575.792589	1149.57063	0.39186	0.00022563	-0.74433	-0.00042858	-0.35247	-0.00020295	575.792550345554	129.1	0.59256	127.65	127.2	127.79	-1.4565	0.26136	0.00025279	NaN	221.53	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11317			55769	6223	46048	46087							0.0018230589485028759
SYIELPAYL	9	Unmodified	_SYIELPAYL_					0	0	0		ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	MULTI-MSMS	OvCa99_classI_Rep5	1	534.785888671875	2	534.784233	1067.55391	1.5143	0.00080982	0.78874	0.00042181	2.303	0.0012316	534.7844684596323	147.86	1.0706	147.86	147.55	148.62	0					59	21	4	0	0	0	0.13154	1	17310	17310		88.643	14.668	1	726250			55770	6188	46049	46088	60920	60920					0.02283805008892159
SYIEQKLGL	9	Unmodified	_SYIEQKLGL_					0	0	0		tr|A0A553SII0|A0A553SII0_NIACISugarABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_14855PE=4SV=1	tr|A0A553SII0|A0A553SII0_NIACISugarABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_14855PE=4SV=1	tr|A0A553SII0|A0A553SII0_NIACISugarABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_14855PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.7228393554688	2	525.795132	1049.57571	-0.848	-0.00044587	0.80319	0.00042231	-0.044804	-2.3558E-05	525.7952154355779	65.273	0.72308	61.788	61.456	62.179	-3.4854					32	14	3	0	0	0	0.027462	1	4733	4733		45.952	20.502	1	85042			55771	33383	46050	46089	60921	60921					0.05290609757457787
SYIFKREPP	9	Unmodified	_SYIFKREPP_					0	0	0		nc|ENSG00000121104|Q9C073-2|FAM117A;ENSG00000121104|ENST00000240364|FAM117A	nc|ENSG00000121104|Q9C073-2|FAM117A	nc|ENSG00000121104|Q9C073-2|FAM117A	MULTI-MSMS	OvCa9_classI_Rep4_	4	568.8109741210938	2	568.808574	1135.60259	-1.5482	-0.00088062	1.0905	0.0006203	-0.45766	-0.00026032	568.8090746560646	126.65	0.79337	125.24	124.97	125.76	-1.4143					35	15	3	0	0	0	0.51865	1	12072	12072		40.778	5.1599	1	62582			55772	3472	46051	46090	60922	60922					0.04021718368653637
SYIHYVFRL	9	Unmodified	_SYIHYVFRL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	OvCa99_classI_Rep5	1	599.3264770507812	2	599.324391	1196.63423	1.9795	0.0011864	-0.21922	-0.00013138	1.7603	0.001055	599.3241957823005	102.11	0.80936	102.11	101.91	102.72	0					43	18	3	0	0	0	0.059253	2	11365	11365;11388		113.41	47.946	1	1589600			55773	3189	46052	46091	60923;60924	60923					0.0437771112262908
SYIKFPID	8	Unmodified	_SYIKFPID_					0	0	0			REV__PCDHGB6|p.F515Tfs*16|1|0.14|ENSG00000253305|chr5:141409744-141409745|-/ACTCCTCCTGTCCTGGGCCGAATGCTCT|frameshift_variant	REV__PCDHGB6|p.F515Tfs*16|1|0.14|ENSG00000253305|chr5:141409744-141409745|-/ACTCCTCCTGTCCTGGGCCGAATGCTCT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	490.77484130859375	2	491.765843	981.517133	-1.1799	-0.00058023	-4.2248	-0.0020776	-5.4047	-0.0026579	491.76364264876713	91.381	0.55504	89.357	89.079	89.634	-2.0241					16	10	2	0	0	0	0.028476	1	5708	5708		60.972	10.947	1	32335	+		55774	23503	46053	46092	60925	60925					0.02563553182983469
SYIKLKEKK	9	Unmodified	_SYIKLKEKK_					0	0	0			REV__tr|A0A7D6ZXZ0|A0A7D6ZXZ0_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00095PE=4SV=1	REV__tr|A0A7D6ZXZ0|A0A7D6ZXZ0_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00095PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	568.8538818359375	2	568.855524	1135.69649	-5.375	-0.0030576	2.0179	0.0011479	-3.3571	-0.0019097	568.8565433281535	160.72	1.3933	160.5	160.18	161.57	-0.22696					89	27	5	0	0	0	0.69123	1	16389	16389		20.947	0	1	747650	+		55775	32352	46054	46093	60926	60926					0.1340743747093711
SYIKLKEKK	9	Unmodified	_SYIKLKEKK_					0	0	0			REV__tr|A0A7D6ZXZ0|A0A7D6ZXZ0_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00095PE=4SV=1	REV__tr|A0A7D6ZXZ0|A0A7D6ZXZ0_9CLOTSensorhistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00095PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	568.8522338867188	2	568.855524	1135.69649	-7.0365	-0.0040027	3.4991	0.0019905	-3.5374	-0.0020123	568.857375140279	161.4	1.8223	160.03	159.69	161.51	-1.3692					107	37	5	0	0	0	0.67509	1	14092	14092		23.042	3.0457	1	827460	+		55776	32352	46054	46093	60927	60927					0.1340743747093711
SYIKQIFPM	9	Unmodified	_SYIKQIFPM_					0	0	0		ENSG00000197016|ENST00000330619|ZNF470	ENSG00000197016|ENST00000330619|ZNF470	ENSG00000197016|ENST00000330619|ZNF470	MULTI-MSMS	OvCa99_classI_Rep5	1	563.8048095703125	2	563.801903	1125.58925	0.18772	0.00010584	2.5105	0.0014154	2.6983	0.0015213	563.8032978828435	60.259	2.3993	60.259	59.766	62.165	0					128	57	5	0	0	0	0.44294	1	5286	5286		47.916	0.25827	1	31021000			55777	8670	46055	46094	60928	60928					0.03148144265060182
SYILLLYPK	9	Unmodified	_SYILLLYPK_					0	0	0			REV__ENSG00000165953|ENST00000677451|SERPINA12	REV__ENSG00000165953|ENST00000677451|SERPINA12	MULTI-SECPEP	OvCa9_classI_Rep4_	4	556.2965087890625	2	555.333893	1108.65323	-1.1883	-0.0006599	1.405	0.00078026	0.21672	0.00012035	555.33468772485	146.98	1.301	145.54	145.17	146.48	-1.4357					42	25	2	0	0	0	0.027462	1	14437	14437		23.042	0	1	25542	+		55778	21142	46056	46095	60929	60929					0.10325247693640449
SYIPEVFH	8	Unmodified	_SYIPEVFH_					0	0	0		tr|A0A7D6VVT8|A0A7D6VVT8_9CLOTDUF4116domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06385PE=4SV=1	tr|A0A7D6VVT8|A0A7D6VVT8_9CLOTDUF4116domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06385PE=4SV=1	tr|A0A7D6VVT8|A0A7D6VVT8_9CLOTDUF4116domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06385PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.78814697265625	2	496.247818	990.481082	0.38069	0.00018891	-3.0241	-0.0015007	-2.6434	-0.0013118	496.24602277806156	72.436	0.4472	72.436	72.086	72.533	0					12	10	2	0	0	0	0.028476	1	7004	7004		35.201	1.0282	1	109270			55779	35235	46057	46096	60930	60930					-0.014539039938654241
SYIPLFPQL	9	Unmodified	_SYIPLFPQL_					0	0	0		ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	ENSG00000165996|ENST00000361271|HACD1	MULTI-MSMS	OvCa99_classI_Rep5	1	539.3034057617188	2	539.302593	1076.59063	0.55248	0.00029795	-1.3562	-0.00073142	-0.80376	-0.00043347	539.3018467331764	160.84	2.0705	160.84	160.45	162.53	0					127	40	6	0	0	0	0.015391	4	18858	18835;18858;18882;18943		152.47	0	1	6909800			55780	6625	46058	46097	60931;60932;60933;60934	60932					0.0554010162547911
SYIQRLVQI	9	Unmodified	_SYIQRLVQI_					0	0	0		nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1;nc|ENSG00000101347|Q9Y3Z3-4|SAMHD1;ENSG00000101347|ENST00000646673|SAMHD1	nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1	nc|ENSG00000101347|Q9Y3Z3-3|SAMHD1	MULTI-MSMS	OvCa99_classI_Rep5	1	560.33056640625	2	560.329673	1118.64479	2.8525	0.0015984	-0.94241	-0.00052806	1.9101	0.0010703	560.3290531557004	107.45	0.71358	107.45	107.1	107.82	0					39	16	3	0	0	0	0.1243	2	12115	12115;12150		90.601	25.135	1	2254400			55781	2169	46059	46098	60935;60936	60935					0.09021693777026485
SYIRIPQLLS	10	Unmodified	_SYIRIPQLLS_					0	0	0			REV__nc|ENSG00000172987|Q8WWQ2-4|HPSE2	REV__nc|ENSG00000172987|Q8WWQ2-4|HPSE2	MULTI-SECPEP	OvCa99_classI_Rep5	1	595.321533203125	2	595.350606	1188.68666	1.8019	0.0010728	-0.15339	-9.1324E-05	1.6485	0.00098145	595.3503994693067	112.48	0.40905	112.48	112.2	112.61	0					14	8	3	0	0	0	0.02658	1	12815	12815		37.812	0	1	160780	+		55782	21741	46060	46099	60937	60937					0.09986249465578112
SYIRKKQPS	9	Unmodified	_SYIRKKQPS_					0	0	0		ENST00000451384.6_2_2:98292117-98319261:+|nuORF;ENSG00000228486|ENST00000627399|C2orf92	ENST00000451384.6_2_2:98292117-98319261:+|nuORF	ENST00000451384.6_2_2:98292117-98319261:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8193359375	2	553.819473	1105.62439	0.35055	0.00019414	-0.44692	-0.00024751	-0.09637	-5.3372E-05	553.8191095428485	32.261	1.2872	29.551	29.233	30.52	-2.7097					61	25	4	0	0	0	0.63422	1	1067	1067		27.882	0	1	380430			55783	12047	46061	46100	60938	60938					0.07580523117235316
SYISISLSKE	10	Unmodified	_SYISISLSKE_					0	0	0		tr|A0A7D6VVY0|A0A7D6VVY0_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_06935PE=4SV=1	tr|A0A7D6VVY0|A0A7D6VVY0_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_06935PE=4SV=1	tr|A0A7D6VVY0|A0A7D6VVY0_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_06935PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	563.8055419921875	2	563.803154	1125.59175	0.18772	0.00010584	0.2913	0.00016424	0.47903	0.00027008	563.8032978828435	60.259	2.3993	60.259	59.766	62.165	0					128	57	5	0	0	0	0.6349	1	5227	5227		37.812	0	1	31021000			55784	35238	46062	46101	60939	60939					0.0339827120371865
SYISRTNQL	9	Unmodified	_SYISRTNQL_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MSMS	OvCa99_classI_Rep5	1	541.2867431640625	2	541.285463	1080.55637	-0.16278	-8.811E-05	-0.25257	-0.00013671	-0.41535	-0.00022482	541.2853031206738	62.016	1.1951	62.016	61.665	62.86	0					69	28	4	0	0	0	0.040625	1	5518	5518		126.24	24.642	1	14726000			55785	5666	46063	46102	60940	60940					0.01931653466544958
SYKKFSILR	9	Unmodified	_SYKKFSILR_					0	0	0			REV__tr|A0A7D6W3X6|A0A7D6W3X6_9CLOTUvrABCsystemproteinAOS=ClostridiumintestinaleOX=36845GN=HZF06_11640PE=3SV=1	REV__tr|A0A7D6W3X6|A0A7D6W3X6_9CLOTUvrABCsystemproteinAOS=ClostridiumintestinaleOX=36845GN=HZF06_11640PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.8171997070312	2	571.340041	1140.66553	-0.88754	-0.00050709	0.33133	0.0001893	-0.55621	-0.00031778	571.340490711536	28.365	0.34861	28.365	28.19	28.539	0					9	6	2	0	0	0	0.027462	1	928	928		27.882	7.4004	1	64166	+		55786	31926	46064	46103	60941	60941					0.10082284156692367
SYKSDIAGGQI	11	Unmodified	_SYKSDIAGGQI_					0	0	0		tr|A0A7D6VNW0|A0A7D6VNW0_9CLOTLTAsynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19795PE=3SV=1	tr|A0A7D6VNW0|A0A7D6VNW0_9CLOTLTAsynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19795PE=3SV=1	tr|A0A7D6VNW0|A0A7D6VNW0_9CLOTLTAsynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19795PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	569.7884521484375	2	569.790578	1137.5666	-0.9559	-0.00054466	-0.35458	-0.00020204	-1.3105	-0.0007467	569.7902502017694	146.03	1.5267	144.59	144.15	145.67	-1.4357					62	26	4	0	0	0	0.65063	1	14370	14370		40.058	1.252	1	170700			55787	34733	46065	46104	60942	60942					0.0033221640114788897
SYKTTKLRSQS	11	Unmodified	_SYKTTKLRSQS_					0	0	0			REV__ENST00000472637.5_1_3:112724385-112732818:-|nuORF	REV__ENST00000472637.5_1_3:112724385-112732818:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	433.5756530761719	3	433.573614	1297.69901	1.7463	0.00075715	2.755	0.0011945	4.5013	0.0019516	433.57473970684964	64.458	1.2134	61.465	61.242	62.456	-2.9933					51	23	3	0	0	0	0.6986	1	2517	2517		30.139	1.5624	1	102690	+		55788	20858	46066	46105	60943	60943					0.062072411379404
SYLDRTEQL	9	Unmodified	_SYLDRTEQL_					0	0	0		ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	ENSG00000065268|ENST00000585809|WDR18	MULTI-MSMS	OvCa99_classI_Rep5	1	562.7841796875	2	562.782753	1123.55095	2.5209	0.0014187	-0.40727	-0.0002292	2.1137	0.0011895	562.7823316956606	77.444	0.67339	77.444	77.211	77.884	0					39	15	4	0	0	0	0.033166	1	7801	7801		132.76	8.1636	1	2698200			55789	1319	46067	46106	60944	60944					-0.005880701158957891
SYLDSIHFF	9	Unmodified	_SYLDSIHFF_					0	0	0		ENSG00000005339|ENST00000262367|CREBBP;nc|ENSG00000005339|Q92793-2|CREBBP	ENSG00000005339|ENST00000262367|CREBBP	ENSG00000005339|ENST00000262367|CREBBP	MULTI-MSMS	OvCa99_classI_Rep5	1	564.7734375	2	564.771657	1127.52876	2.4777	0.0013993	-0.66113	-0.00037339	1.8166	0.0010259	564.7711094128501	137.02	0.76932	137.02	136.77	137.54	0					38	15	4	0	0	0	0.11171	2	15973	15973;15997		94.006	35.224	1	502070			55790	851	46068	46107	60945;60946	60945					-0.029902497936518557
SYLGLKVVY	9	Unmodified	_SYLGLKVVY_					0	0	0		tr|A0A553SSE6|A0A553SSE6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02985PE=4SV=1	tr|A0A553SSE6|A0A553SSE6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02985PE=4SV=1	tr|A0A553SSE6|A0A553SSE6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02985PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	521.3008422851562	2	521.302593	1040.59063	-0.71731	-0.00037394	-2.3283	-0.0012137	-3.0456	-0.0015877	521.3013451951931	49.755	2.2298	46.995	46.325	48.555	-2.7603					109	44	4	0	0	0	0.62352	1	3207	3207		29.15	2.3535	1	840970			55791	34366	46069	46108	60947	60947					0.07196101625481788
SYLHEPAVL	9	Unmodified	_SYLHEPAVL_					0	0	0		ENSG00000128833|ENST00000261839|MYO5C;nc|ENSG00000128833|Q9NQX4-2|MYO5C;MYO5C|p.W521Sfs*6|1|0.26|ENSG00000128833|chr15:52251489-52251490|CC/-|frameshift_variant;ENST00000541028.5_1_15:52553308-52587917:-|nuORF;MYO5A|p.P112Vfs*35|1|0.05|ENSG00000197535|chr15:52425951-52425952|-/TAAAACATAAC|frameshift_variant;ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	ENSG00000128833|ENST00000261839|MYO5C;ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000197535|Q9Y4I1-2|MYO5A	ENSG00000128833|ENST00000261839|MYO5C	MULTI-MSMS	OvCa99_classI_Rep5	1	514.7755737304688	2	514.7742	1027.53385	2.4892	0.0012814	-0.36595	-0.00018838	2.1233	0.001093	514.7739521652833	89.301	0.63777	89.301	89.043	89.681	0					37	15	3	0	0	0	0.34496	1	9529	9529		57.811	0	1	1567500			55792	3907;6778;8720	46070	46109	60948	60948					0.021180540689329064
SYLHEPAVL	9	Unmodified	_SYLHEPAVL_					0	0	0		ENSG00000128833|ENST00000261839|MYO5C;nc|ENSG00000128833|Q9NQX4-2|MYO5C;MYO5C|p.W521Sfs*6|1|0.26|ENSG00000128833|chr15:52251489-52251490|CC/-|frameshift_variant;ENST00000541028.5_1_15:52553308-52587917:-|nuORF;MYO5A|p.P112Vfs*35|1|0.05|ENSG00000197535|chr15:52425951-52425952|-/TAAAACATAAC|frameshift_variant;ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A	ENSG00000128833|ENST00000261839|MYO5C;ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000197535|Q9Y4I1-2|MYO5A	ENSG00000128833|ENST00000261839|MYO5C	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	514.7742	1027.53385	-0.72168	-0.0003715	-2.1471	-0.0011053	-2.8688	-0.0014768	514.7735517298183	91.694	0.25163	89.151	89.061	89.313	-2.5425	-0.074973	-0.0017291	NaN	57.811	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12133			55793	3907;6778;8720	46070	46109							0.021180540689329064
SYLKQLPHF	9	Unmodified	_SYLKQLPHF_					0	0	0		SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant;ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF	SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	566.8126220703125	2	566.811116	1131.60768	2.6861	0.0015225	-2.7109	-0.0015366	-0.024802	-1.4058E-05	566.8103232194045	89.101	1.0051	89.101	88.717	89.722	0					96	24	5	0	0	0	0.025955	3	9505	9485;9505;9535		139.97	60.519	1	21539000			55794	5119	46071	46110	60949;60950;60951	60950					0.04714022231269155
SYLLFLLF	8	Unmodified	_SYLLFLLF_					0	0	0			REV__ENST00000411421.1_1_13:69559377-69559785:+|nuORF	REV__ENST00000411421.1_1_13:69559377-69559785:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	508.7963562011719	2	508.296779	1014.57901	-0.36002	-0.000183	2.3568	0.0011979	1.9967	0.0010149	508.29832358903644	24.049	0.53824	24.049	23.748	24.287	0					27	10	4	0	0	0	0.74679	1	398	398		28.254	0	1	221270	+		55795	22194	46072	46111	60952	60952					0.07229904602149873
SYLLLAARGR	10	Unmodified	_SYLLLAARGR_					0	0	0			REV__nc|ENSG00000288550|Q8NAC3|IL17RC	REV__nc|ENSG00000288550|Q8NAC3|IL17RC	MULTI-MSMS	OvCa99_classI_Rep5	1	560.3353271484375	2	560.33529	1118.65603	0.16124	9.0348E-05	-0.35004	-0.00019614	-0.1888	-0.00010579	560.3348391499532	38.995	0.4955	38.995	38.836	39.332	0					23	10	3	0	0	0	0.66721	1	2263	2263		34.173	4.331	1	369100	+		55796	29206	46073	46112	60953	60953					0.10144515871161275
SYLLVAVFL	9	Unmodified	_SYLLVAVFL_					0	0	0			REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	REV__nc|ENSG00000138119|Q9NZM1-2|MYOF	MULTI-MSMS	OvCa9_classI_Rep3	3	512.8056030273438	2	512.807511	1023.60047	0.48569	0.00024906	-4.4183	-0.0022657	-3.9326	-0.0020167	512.8051194113467	130.74	1.1749	129.61	129.32	130.49	-1.1249					50	23	3	0	0	0	0.52083	1	10397	10397		40.573	0	1	153750	+		55797	19513	46074	46113	60954	60954					0.0896128963083811
SYLMQMKLL	9	Unmodified	_SYLMQMKLL_					0	0	0		tr|A0A553SLL9|A0A553SLL9_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_20905PE=4SV=1	tr|A0A553SLL9|A0A553SLL9_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_20905PE=4SV=1	tr|A0A553SLL9|A0A553SLL9_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_20905PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	563.8052978515625	2	563.803588	1125.59262	0.18772	0.00010584	-0.47882	-0.00026996	-0.2911	-0.00016412	563.8032978828435	60.259	2.3993	60.259	59.766	62.165	0					128	57	5	0	0	0	0.44294	1	5254	5254		47.916	1.9636	1	31021000			55798	33741	46075	46114	60955	60955					0.034850710474302105
SYLMTCQTP	9	Unmodified	_SYLMTCQTP_					0	0	0			REV__ENSG00000154864|ENST00000674853|PIEZO2	REV__ENSG00000154864|ENST00000674853|PIEZO2	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.2539672851562	2	522.230453	1042.44635	-2.3067	-0.0012046	3.1347	0.001637	0.82798	0.0004324	522.2321944053284	104.43	0.47388	104.43	104.06	104.54	0					15	10	2	0	0	0	0.027462	1	11688	11688		26.693	0	1	221070	+		55799	20404	46076	46115	60956	60956					-0.07317231188494588
SYLPISPTF	9	Unmodified	_SYLPISPTF_					0	0	0		ENSG00000089057|ENST00000338244|SLC23A2;nc|ENSG00000089057|Q9UGH3-2|SLC23A2	ENSG00000089057|ENST00000338244|SLC23A2	ENSG00000089057|ENST00000338244|SLC23A2	MULTI-MSMS	OvCa99_classI_Rep5	1	512.7733154296875	2	512.771126	1023.5277	1.4427	0.00073979	0.6632	0.00034007	2.1059	0.0010799	512.7713412506024	138.45	0.67082	138.45	138.16	138.83	0					27	13	3	0	0	0	0.35444	1	16152	16152		56.721	3.3696	1	198030			55800	1807	46077	46116	60957	60957					0.016875358374363714
SYLPLAHMF	9	Unmodified	_SYLPLAHMF_					0	0	0		nc|ENSG00000164398|Q9UKU0-2|ACSL6;nc|ENSG00000164398|Q9UKU0-3|ACSL6;nc|ENSG00000164398|Q9UKU0-8|ACSL6;ACSL5|p.I302V|1|0.06|ENSG00000197142|chr10:112411935-112411935|A/G|missense_variant;nc|ENSG00000197142|Q9ULC5-4|ACSL5;ENSG00000197142|ENST00000354655|ACSL5;nc|ENSG00000197142|Q9ULC5-3|ACSL5	nc|ENSG00000164398|Q9UKU0-2|ACSL6	nc|ENSG00000164398|Q9UKU0-2|ACSL6	MULTI-MSMS	OvCa99_classI_Rep5	1	539.7745361328125	2	539.773145	1077.53174	1.7824	0.00096212	-0.18398	-9.9306E-05	1.5985	0.00086281	539.7730151723681	126.4	1.423	126.4	125.81	127.23	0					137	30	9	0	0	0	0.037679	3	14630	14607;14630;14652		128.82	58	1	3417800			55801	15145	46078	46117	60958;60959;60960	60959					-0.003926979405150632
SYLPPLLLVQL	11	Unmodified	_SYLPPLLLVQL_					0	0	0			REV__ENST00000529121.2_1_11:61102034-61102169:+|nuORF	REV__ENST00000529121.2_1_11:61102034-61102169:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	628.382568359375	2	628.386657	1254.75876	-3.3027	-0.0020754	-3.5224	-0.0022134	-6.8252	-0.0042888	628.3842124119614	147.07	3.8366	146.85	145.03	148.87	-0.22696					134	76	2	0	0	0	0.72473	1	14838	14838		19.104	1.6355	1	131170	+		55802	27186	46079	46118	60961	60961					0.1415716381927723
SYLQAANAL	9	Unmodified	_SYLQAANAL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;COL6A3|p.T1393Cfs*9|1|0.09|ENSG00000163359|chr2:237371828-237371840|GCTCCCGGAAGGT/-|frameshift_variant;COL6A3|p.K1001Nfs*34|1|0.23|ENSG00000163359|chr2:237376800-237376839|TTTTAAGAGATTCACTATCTGTGGATGAAGATCTCCAATC/-|frameshift_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	475.752197265625	2	475.750724	949.486896	2.3366	0.0011116	-0.024547	-1.1678E-05	2.312	0.0010999	475.7505613565679	100.47	1.125	100.47	100.15	101.27	0					56	26	4	0	0	0	0.014964	2	11129	11129;11161		153.04	43.332	1	5070100			55803	6293	46080	46119	60962;60963	60962					0.010131945177818125
SYLQAANAL	9	Unmodified	_SYLQAANAL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;COL6A3|p.T1393Cfs*9|1|0.09|ENSG00000163359|chr2:237371828-237371840|GCTCCCGGAAGGT/-|frameshift_variant;COL6A3|p.K1001Nfs*34|1|0.23|ENSG00000163359|chr2:237376800-237376839|TTTTAAGAGATTCACTATCTGTGGATGAAGATCTCCAATC/-|frameshift_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	475.750724	949.486896	-1.2522	-0.00059573	1.3208	0.00062838	0.06864	3.2655E-05	475.7510677431633	101.06	0.69325	100.3	100.07	100.77	-0.76401	-0.063859	0.0012098	NaN	153.04	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21176			55804	6293	46080	46119							0.010131945177818125
SYLQAANAL	9	Unmodified	_SYLQAANAL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;COL6A3|p.T1393Cfs*9|1|0.09|ENSG00000163359|chr2:237371828-237371840|GCTCCCGGAAGGT/-|frameshift_variant;COL6A3|p.K1001Nfs*34|1|0.23|ENSG00000163359|chr2:237376800-237376839|TTTTAAGAGATTCACTATCTGTGGATGAAGATCTCCAATC/-|frameshift_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	475.750724	949.486896	0.057992	2.759E-05	-0.5168	-0.00024587	-0.45881	-0.00021828	475.7505807239626	101.89	0.78534	100.37	100	100.79	-1.5211	0.0086911	-0.00053872	NaN	153.04	17	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19039			55805	6293	46080	46119							0.010131945177818125
SYLQAANAL	9	Unmodified	_SYLQAANAL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;COL6A3|p.T1393Cfs*9|1|0.09|ENSG00000163359|chr2:237371828-237371840|GCTCCCGGAAGGT/-|frameshift_variant;COL6A3|p.K1001Nfs*34|1|0.23|ENSG00000163359|chr2:237376800-237376839|TTTTAAGAGATTCACTATCTGTGGATGAAGATCTCCAATC/-|frameshift_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	475.750724	949.486896	0.40601	0.00019316	0.053541	2.5472E-05	0.45955	0.00021863	475.7506842174055	102.51	0.89449	100.31	99.937	100.83	-2.1994	-0.051694	3.9567E-06	NaN	153.04	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18508			55806	6293	46080	46119							0.010131945177818125
SYLQIAKSF	9	Unmodified	_SYLQIAKSF_					0	0	0		tr|A0A553SF56|A0A553SF56_NIACIDUF624domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_08255PE=4SV=1	tr|A0A553SF56|A0A553SF56_NIACIDUF624domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_08255PE=4SV=1	tr|A0A553SF56|A0A553SF56_NIACIDUF624domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_08255PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.3076171875	2	528.78985	1055.56515	2.4841	0.0013135	-4.2263	-0.0022348	-1.7422	-0.00092127	528.78728737225	75.245	0.39522	75.245	75.087	75.482	0					15	9	2	0	0	0	0.027462	1	7513	7513		31.955	0	1	376050			55807	32993	46081	46120	60964	60964					0.039586271030202624
SYLSSILRF	9	Unmodified	_SYLSSILRF_					0	0	0		ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1;ENST00000529795.1_1_11:66001292-66002875:+|nuORF	ENSG00000175115|ENST00000320580|PACS1	ENSG00000175115|ENST00000320580|PACS1	MULTI-MSMS	OvCa99_classI_Rep5	1	543.304443359375	2	543.303124	1084.5917	1.963	0.0010665	0.69263	0.00037631	2.6556	0.0014428	543.3032672629355	134.01	0.66559	134.01	133.67	134.34	0					34	13	4	0	0	0	0.10502	1	15603	15603		95.815	16.364	1	954010			55808	7518	46082	46121	60965	60965					0.05278315994382865
SYLTGMLLF	9	Unmodified	_SYLTGMLLF_					0	0	0		ENST00000544293.1_1_11:73879278-73881837:-|nuORF	ENST00000544293.1_1_11:73879278-73881837:-|nuORF	ENST00000544293.1_1_11:73879278-73881837:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.2930908203125	2	522.775354	1043.53615	-0.11446	-5.9835E-05	3.6609	0.0019138	3.5465	0.001854	522.7773051988532	38.552	0.44539	35.626	35.453	35.898	-2.9264					14	8	2	0	0	0	0.027462	1	1534	1534		33.516	6.7195	1	26419			55809	13505	46083	46122	60966	60966					0.01612766482412553
SYLTGMLLF	9	Unmodified	_SYLTGMLLF_					0	0	0		ENST00000544293.1_1_11:73879278-73881837:-|nuORF	ENST00000544293.1_1_11:73879278-73881837:-|nuORF	ENST00000544293.1_1_11:73879278-73881837:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	522.775354	1043.53615	-1.2185	-0.00063703	5.4527	0.0028505	4.2342	0.0022135	523.2801589275888	38.361	0.34665	35.652	35.469	35.816	-2.7097	0.012888	0.0016548	NaN	33.516	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8819.9			55810	13505	46083	46122							0.01612766482412553
SYLTIHHRI	9	Unmodified	_SYLTIHHRI_					0	0	0		ENSG00000146587|ENST00000396912|RBAK;nc|ENSG00000164631|P17014-3|ZNF12;nc|ENSG00000164631|P17014-4|ZNF12;nc|ENSG00000164631|P17014-5|ZNF12;ENSG00000164631|ENST00000405858|ZNF12	ENSG00000146587|ENST00000396912|RBAK	ENSG00000146587|ENST00000396912|RBAK	MULTI-MSMS	OvCa99_classI_Rep5	1	570.3200073242188	2	570.31964	1138.62473	-0.27382	-0.00015616	0.16481	9.3994E-05	-0.10901	-6.2168E-05	570.3194905075333	53.07	0.60443	53.07	52.784	53.389	0					29	13	3	0	0	0	0.3076	1	4194	4194		62.107	7.3311	1	1156400			55811	5300	46084	46123	60967	60967					0.06095942837077928
SYMGHFDL	8	Unmodified	_SYMGHFDL_					0	0	0		ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	MULTI-MSMS	OvCa99_classI_Rep5	1	485.2120666503906	2	485.210378	968.406203	2.6986	0.0013094	-0.69118	-0.00033537	2.0075	0.00097404	485.2099232641265	96.37	0.62701	96.37	96.126	96.753	0					23	14	2	0	0	0	0.50674	1	10556	10556		76.847	10.949	1	1344200			55812	7061	46085	46124	60968	60968					-0.07926409796743883
SYMGHFDLL	9	Oxidation (M)	_SYM(Oxidation (M))GHFDLL_		SYM(1)GHFDLL		SYM(97)GHFDLL	0	0	1		ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	MULTI-MSMS	OvCa99_classI_Rep5	1	549.7514038085938	2	549.749867	1097.48518	0.24319	0.00013369	2.1684	0.0011921	2.4116	0.0013258	549.7508195345179	101.5	1.0175	101.5	101.23	102.25	0					59	23	4	0	0	0	0.098892	2	11310	11280;11310		97.473	12.113	1	3070800			55813	7061	46086	46125	60969;60970	60970		218			-0.059661825624516496
SYMGHFDLL	9	Oxidation (M)	_SYM(Oxidation (M))GHFDLL_		SYM(1)GHFDLL		SYM(110)GHFDLL	0	0	1		ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	MULTI-MSMS	OvCa99_classI_Rep5	1	549.7518310546875	2	549.749867	1097.48518	-0.5232	-0.00028763	0.046352	2.5482E-05	-0.47685	-0.00026215	549.749826124601	103.35	3.8669	103.35	102.81	106.67	0					149	89	2	0	0	0	0.071436	1	11552	11552		106.42	21.5	1	867450			55814	7061	46086	46125	60971	60971		218			-0.059661825624516496
SYMGHFDLL	9	Unmodified	_SYMGHFDLL_					0	0	0		ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	ENSG00000169976|ENST00000367569|SF3B5	MULTI-MSMS	OvCa99_classI_Rep5	1	541.75341796875	2	541.75241	1081.49027	2.724	0.0014757	-1.1465	-0.00062111	1.5775	0.00085463	541.751882560157	116.03	2.2073	116.03	115.63	117.84	0					146	47	6	0	0	0	0.079296	4	13267	13244;13267;13291;13317		102.77	20.032	1	29049000			55815	7061	46086	46126	60972;60973;60974;60975	60973					-0.047218786998428186
SYMKNIKVS	9	Unmodified	_SYMKNIKVS_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.2883911132812	2	535.289159	1068.56377	1.0466	0.00056021	-3.1254	-0.001673	-2.0789	-0.0011128	535.2872282420172	105.72	0.48324	105.72	105.53	106.01	0					27	10	3	0	0	0	0.027462	1	11904	11904		17.365	9.1337	1	706920	+		55816	28942;32737	46087	46127	60976	60976					0.03222669742626749
SYMLVNENRF	10	Unmodified	_SYMLVNENRF_					0	0	0		ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	ENSG00000182195|ENST00000370526|LDOC1	MULTI-MSMS	OvCa99_classI_Rep5	1	636.8085327148438	2	636.805705	1271.59686	2.155	0.0013723	-0.20839	-0.0001327	1.9466	0.0012396	636.8057068826387	93.767	0.58078	93.767	93.426	94.007	0					27	11	3	0	0	0	0.11648	1	10182	10182		109.44	51.209	1	1472200			55817	7979	46088	46128	60977	60977					-0.028077482053504355
SYMPVIDVF	9	Unmodified	_SYMPVIDVF_					0	0	0		ENSG00000168014|ENST00000334126|C2CD3;C2CD3|p.V1140Efs*16|1|0.06|ENSG00000168014|chr11:74092514-74092515|-/GGCTCTAGCCATTTTCTTTTTAAACTTT|frameshift_variant;nc|ENSG00000168014|Q4AC94-2|C2CD3;nc|ENSG00000168014|Q4AC94-4|C2CD3;nc|ENSG00000168014|Q4AC94-1|C2CD3;nc|ENSG00000168014|Q4AC94-3|C2CD3	ENSG00000168014|ENST00000334126|C2CD3	ENSG00000168014|ENST00000334126|C2CD3	MULTI-MSMS	OvCa99_classI_Rep5	1	535.7658081054688	2	535.764986	1069.51542	1.1008	0.00058975	0.62409	0.00033437	1.7249	0.00092412	535.7653248947195	155.9	0.61092	155.9	155.63	156.24	0					24	11	3	0	0	0	0.48324	1	18267	18267		44.117	1.7207	1	107430			55818	6863	46089	46129	60978	60978					-0.0165582389724932
SYNDYVREF	9	Unmodified	_SYNDYVREF_					0	0	0		nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	MULTI-MSMS	OvCa9_classI_Rep3	3	596.7676391601562	2	596.767103	1191.51965	-0.28841	-0.00017211	-0.047927	-2.8601E-05	-0.33634	-0.00020071	596.7670908955546	93.315	1.5155	91.354	91.03	92.545	-1.9617					76	29	6	0	0	0	0.0076252	1	5972	5972		195.05	69.232	1	539200			55819	1706	46090	46130	60979	60979					-0.06844643150020602
SYNDYVREF	9	Unmodified	_SYNDYVREF_					0	0	0		nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	596.768310546875	2	596.767103	1191.51965	-0.026406	-1.5758E-05	-0.41423	-0.0002472	-0.44063	-0.00026295	596.7668473979338	93.826	1.2169	91.319	91.105	92.322	-2.5072					68	25	4	0	0	0	0.023079	3	8188	8188;8201;8213		143.37	60.4	1	476210			55820	1706	46090	46130	60980;60981;60982	60980					-0.06844643150020602
SYNDYVREF	9	Unmodified	_SYNDYVREF_					0	0	0		nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	596.767103	1191.51965	2.664	0.0015898	-0.29871	-0.00017826	2.3653	0.0014115	596.7669109901526	91.646	0.33514	91.646	91.459	91.794	0	0.19976	-0.00031286	NaN	195.05	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	428160			55821	1706	46090	46130							-0.06844643150020602
SYNDYVREF	9	Unmodified	_SYNDYVREF_					0	0	0		nc|ENSG00000083896|Q96MU7-2|YTHDC1;ENSG00000083896|ENST00000344157|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	nc|ENSG00000083896|Q96MU7-2|YTHDC1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	596.767103	1191.51965	-0.11527	-6.8791E-05	0.17552	0.00010474	0.060247	3.5953E-05	596.7670673730572	92.636	1.4472	91.468	91.024	92.471	-1.168	0.020899	0.00025315	NaN	195.05	81	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197920			55822	1706	46090	46130							-0.06844643150020602
SYNEHWNYL	9	Unmodified	_SYNEHWNYL_					0	0	0		ENST00000535739.5_1_12:6493425-6494510:+|nuORF;LTBR|p.C170Vfs*57|1|0.19|ENSG00000111321|chr12:6386099-6386100|-/GGTGCAGGGGACACAGGAGGTGGTTCTTCTCAGTA|frameshift_variant;nc|ENSG00000111321|P36941-2|LTBR;ENSG00000111321|ENST00000228918|LTBR	ENST00000535739.5_1_12:6493425-6494510:+|nuORF	ENST00000535739.5_1_12:6493425-6494510:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	613.2698364257812	2	613.26727	1224.51999	2.043	0.0012529	-0.077546	-4.7557E-05	1.9654	0.0012053	613.2671060923157	91.37	0.73897	91.37	91.098	91.837	0					43	17	3	0	0	0	0.14855	1	9842	9842		85.161	21.855	1	2486200			55823	2821	46091	46131	60983	60983					-0.08329223430155253
SYNIGLKQL	9	Unmodified	_SYNIGLKQL_					0	0	0			REV__nc|ENSG00000186976|Q5THR3-5|EFCAB6	REV__nc|ENSG00000186976|Q5THR3-5|EFCAB6	MULTI-MSMS	OvCa99_classI_Rep5	1	518.2972412109375	2	518.295299	1034.57605	-1.5221	-0.0007889	1.3247	0.0006866	-0.19737	-0.0001023	518.2959202506543	69.981	0.96907	69.981	69.712	70.681	0					72	23	5	0	0	0	0.12365	1	6709	6709		90.777	19.481	1	12304000	+		55824	22624	46092	46132	60984	60984					0.06014029477319127
SYNPITHQL	9	Unmodified	_SYNPITHQL_					0	0	0		nc|ENSG00000163913|Q9HBG6-11|IFT122;ENST00000506507.5_1_3:129168750-129233481:+|nuORF;nc|ENSG00000163913|Q9HBG6-3|IFT122;ENSG00000163913|ENST00000348417|IFT122;nc|ENSG00000163913|Q9HBG6-5|IFT122;nc|ENSG00000163913|Q9HBG6-6|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	nc|ENSG00000163913|Q9HBG6-11|IFT122	MULTI-MSMS	OvCa99_classI_Rep5	1	536.7764892578125	2	536.774731	1071.53491	2.605	0.0013983	-1.0538	-0.00056567	1.5511	0.00083261	536.773973917704	75.204	0.48224	75.204	74.962	75.444	0					30	11	4	0	0	0	0.13011	1	7480	7480		89.029	25.495	1	5164100			55825	6377	46093	46133	60985	60985					0.0020026843783398363
SYNPLWLRI	9	Unmodified	_SYNPLWLRI_					0	0	0		ENSG00000066279|ENST00000367409|ASPM;nc|ENSG00000066279|Q8IZT6-2|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-MSMS	OvCa99_classI_Rep5	1	581.3206787109375	2	581.324391	1160.63423	1.4141	0.00082203	0.058062	3.3753E-05	1.4721	0.00085579	581.3244161071522	126.2	1.1059	126.2	125.85	126.96	0					68	23	5	0	0	0	0.070405	1	14576	14576		107.01	35.712	1	3041200			55826	1348	46094	46134	60986	60986					0.06033711122586283
SYNTQGRDN	9	Unmodified	_SYNTQGRDN_					0	0	0		ENSG00000132703|ENST00000255040|APCS	ENSG00000132703|ENST00000255040|APCS	ENSG00000132703|ENST00000255040|APCS	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.773681640625	2	527.731052	1053.44755	-0.020745	-1.0948E-05	1.0583	0.00055849	1.0375	0.00054754	527.7316750485769	62.847	0.47906	62.847	62.621	63.1	0					18	11	2	0	0	0	0.027462	1	5658	5658		30.318	10.958	1	217880			55827	4166	46095	46135	60987	60987					-0.07703557503714364
SYNYHPLVGL	10	Unmodified	_SYNYHPLVGL_					0	0	0			REV__ENSG00000164100|ENST00000296499|NDST3	REV__ENSG00000164100|ENST00000296499|NDST3	MULTI-MSMS	OvCa99_classI_Rep5	1	581.8021240234375	2	581.798206	1161.58186	1.4083	0.00081933	2.1964	0.0012779	3.6047	0.0020972	581.7994613744822	125.95	0.37467	125.95	125.81	126.18	0					13	7	2	0	0	0	0.59703	1	14571	14571		42.396	5.9494	1	234130	+		55828	20941	46096	46136	60988	60988					0.007531279890145015
SYPDLLPTF	9	Unmodified	_SYPDLLPTF_					0	0	0		nc|ENSG00000143486|P41214-2|EIF2D;ENSG00000143486|ENST00000271764|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	nc|ENSG00000143486|P41214-2|EIF2D	MULTI-MSMS	OvCa99_classI_Rep5	1	526.7708129882812	2	526.768583	1051.52261	0.78886	0.00041555	-0.2044	-0.00010767	0.58447	0.00030788	526.768368401263	150.82	0.90779	150.82	150.44	151.35	0					42	17	3	0	0	0	0.59983	1	17693	17693		31.955	0	1	681390			55829	5061	46097	46137	60989	60989					-0.0010876802521124773
SYPITKEVS	9	Unmodified	_SYPITKEVS_					0	0	0			REV__ENST00000474969.5_1_2:86385703-86422514:-|nuORF	REV__ENST00000474969.5_1_2:86385703-86422514:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.80950927734375	2	512.27149	1022.52843	2.5812	0.0013223	-0.93547	-0.00047921	1.6457	0.00084306	512.2708175730463	75.287	0.59354	75.287	75.087	75.68	0					27	14	3	0	0	0	0.027462	1	7460	7460		29.15	2.4566	1	1184300	+		55830	26349	46098	46138	60990	60990					0.018063304864767815
SYPPITRSQ	9	Unmodified	_SYPPITRSQ_					0	0	0		ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	ENSG00000125398|ENST00000245479|SOX9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.7228393554688	2	524.774731	1047.53491	-1.2206	-0.00064056	0.27829	0.00014604	-0.94235	-0.00049452	524.7742217722641	65.677	0.29197	62.192	62.082	62.374	-3.4854					9	5	3	0	0	0	0.027462	1	4733	4733		25.574	3.6142	1	14018			55831	3706	46099	46139	60991	60991					0.013042684378433478
SYPSAFSKL	9	Unmodified	_SYPSAFSKL_					0	0	0		nc|ENSG00000166783|Q9Y4F3-3|MARF1;nc|ENSG00000166783|Q9Y4F3-4|MARF1;nc|ENSG00000166783|Q9Y4F3-5|MARF1;ENSG00000166783|ENST00000396368|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	nc|ENSG00000166783|Q9Y4F3-3|MARF1	MULTI-MSMS	OvCa99_classI_Rep5	1	500.2619323730469	2	500.260925	998.507297	2.5045	0.0012529	0.39375	0.00019698	2.8983	0.0014499	500.2609099729918	86.357	1.2628	86.357	85.791	87.054	0					73	30	4	0	0	0	0.35694	1	9091	9091		56.434	8.7765	1	5142200			55832	6710	46100	46140	60992	60992					0.007983651776157785
SYPTFFPRF	9	Unmodified	_SYPTFFPRF_					0	0	0		ENSG00000071794|ENST00000310053|HLTF;ENST00000481663.1_1_3:148801501-148804285:-|nuORF;HLTF|p.K848Tfs*25|1|0.08|ENSG00000071794|chr3:149039653-149039654|-/G|frameshift_variant	ENSG00000071794|ENST00000310053|HLTF	ENSG00000071794|ENST00000310053|HLTF	MULTI-MSMS	OvCa99_classI_Rep5	1	581.3025512695312	2	581.290017	1160.56548	1.4137	0.00082176	0.36433	0.00021178	1.778	0.0010335	581.290316676243	126.27	1.5652	126.27	125.57	127.14	0					86	33	5	0	0	0	0.22621	1	14599	14599		71.877	3.0906	1	2484900			55833	1455	46101	46141	60993	60993					-0.008379531770970061
SYPTKVRLI	9	Unmodified	_SYPTKVRLI_					0	0	0		PACS2-MTA1|1|fusion;ENST00000494981.1_1_14:105935406-105936549:+|nuORF;PACS2-MTA1|2|fusion;ENST00000481635.1_1_14:105935922-105936549:+|nuORF;ENST00000552286.5_1_14:105932689-105936549:+|nuORF;ENST00000481206.1_1_14:105935538-105936549:+|nuORF;nc|ENSG00000182979|Q13330-3|MTA1;ENSG00000182979|ENST00000331320|MTA1	PACS2-MTA1|1|fusion	PACS2-MTA1|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	538.8287963867188	2	538.826766	1075.63898	-0.1976	-0.00010647	0.74256	0.00040011	0.54496	0.00029364	538.8269618740281	71.292	0.68127	71.292	71.068	71.749	0					39	16	3	0	0	0	0.37135	1	6887	6887		54.776	10.66	1	2271300			55834	8043	46102	46142	60994	60994					0.1041859526535518
SYQAERVL	8	Unmodified	_SYQAERVL_					0	0	0			REV__chr8:127290060-127311835|201|15.36|0.0|11.84|-|0|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|61	REV__chr8:127290060-127311835|201|15.36|0.0|11.84|-|0|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|61	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.2989501953125	2	483.256174	964.497795	0.59838	0.00028917	2.6409	0.0012762	3.2393	0.0015654	483.2575538971734	74.354	0.38271	74.354	74.095	74.478	0					16	9	3	0	0	0	0.028476	1	7364	7364		73.975	16.163	1	494760	+		55835	16105	46103	46143	60995	60995					0.01412596892100737
SYQAERVL	8	Unmodified	_SYQAERVL_					0	0	0			REV__chr8:127290060-127311835|201|15.36|0.0|11.84|-|0|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|61	REV__chr8:127290060-127311835|201|15.36|0.0|11.84|-|0|TE_info:L1HS,L1HS_dup899,L1,LINE,donor,+,127311835,127315431|CASC8,None|61	MULTI-MATCH	OvCa9_classI_Rep3	3		2	483.256174	964.497795	-0.86291	-0.00041701	9.6651	0.0046707	8.8022	0.0042537	483.261038983381	76.431	0.26057	74.059	73.825	74.085	-2.3715	-0.14768	0.0049963	NaN	73.975	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7441.4	+		55836	16105	46103	46143							0.01412596892100737
SYQKLLFKF	9	Unmodified	_SYQKLLFKF_					0	0	0		ENSG00000023287|ENST00000025008|RB1CC1;nc|ENSG00000023287|Q8TDY2-2|RB1CC1	ENSG00000023287|ENST00000025008|RB1CC1	ENSG00000023287|ENST00000025008|RB1CC1	MULTI-MSMS	OvCa99_classI_Rep5	1	587.3370361328125	2	587.336967	1172.65938	2.1836	0.0012825	0.11126	6.5345E-05	2.2949	0.0013479	587.3369780565262	98.759	0.98561	98.759	98.461	99.447	0					69	23	4	0	0	0	0.043101	2	10872	10872;10900		124.08	55.28	1	15982000			55837	1037	46104	46144	60996;60997	60996					0.07995765925170417
SYQKVIELF	9	Unmodified	_SYQKVIELF_					0	0	0		ENSG00000168078|ENST00000301905|PBK;nc|ENSG00000168078|Q96KB5-2|PBK;chr8:27833133-27837710|421|26.09|0.78|5.07|-|ENST00000522944|PBK,PBK	ENSG00000168078|ENST00000301905|PBK	ENSG00000168078|ENST00000301905|PBK	MULTI-MSMS	OvCa99_classI_Rep5	1	563.8118896484375	2	563.810782	1125.60701	2.5777	0.0014533	-0.98626	-0.00055606	1.5914	0.00089726	563.8101624910803	113.06	3.0274	113.06	112.74	115.77	0					173	67	6	0	0	0	0.011767	1	12863	12863		163.15	61.898	1	17401000			55838	546	46105	46145	60998	60998					0.04923182791549152
SYQKVMALW	9	Unmodified	_SYQKVMALW_					0	0	0		MACF1-CMTM4|1|fusion;MACF1-CMTM4|2|fusion;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1	MACF1-CMTM4|1|fusion;nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OvCa99_classI_Rep5	1	563.2944946289062	2	563.291702	1124.56885	2.0324	0.0011448	0.11191	6.3038E-05	2.1443	0.0012079	563.2915241609004	107.14	0.59183	107.14	106.85	107.44	0					33	13	3	0	0	0	0.03923	2	12068	12068;12104		127.46	47.522	1	4248700			55839	15005;14812	46106	46146	60999;61000	60999					0.011549736052529624
SYQRAFNEF	9	Unmodified	_SYQRAFNEF_					0	0	0		chr14:103121499-103123437|388|11.02|0.0|20.07|+|ENST00000333007|TNFAIP2,TNFAIP2;ENSG00000185215|ENST00000560869|TNFAIP2;chr14:103130124-103131052|151|25.85|0.81|4.99|+|1|TNFAIP2,TNFAIP2|1	chr14:103121499-103123437|388|11.02|0.0|20.07|+|ENST00000333007|TNFAIP2,TNFAIP2	chr14:103121499-103123437|388|11.02|0.0|20.07|+|ENST00000333007|TNFAIP2,TNFAIP2	MULTI-MSMS	OvCa99_classI_Rep5	1	581.2709350585938	2	581.269813	1160.52507	1.9938	0.001159	0.27854	0.00016191	2.2724	0.0013209	581.2699110106178	80.213	0.83691	80.213	79.907	80.744	0					53	19	4	0	0	0	0.084152	2	8209	8209;8238		101.46	35.031	1	2943100			55840	339	46107	46147	61001;61002	61001					-0.04876919567527693
SYRDSYESY	9	Unmodified	_SYRDSYESY_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MSMS	OvCa9_classI_Rep4_	4	585.2420654296875	2	585.240918	1168.46728	-0.36712	-0.00021485	-0.31926	-0.00018685	-0.68638	-0.0004017	585.2407525292319	61.199	2.083	57.769	57.395	59.478	-3.43					112	42	4	0	0	0	0.024645	4	4174	4174;4184;4198;4216		141.52	59.28	1	1561700			55841	5348	46108	46148	61003;61004;61005;61006	61003					-0.11021226283605756
SYRDSYESY	9	Unmodified	_SYRDSYESY_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-MATCH	OvCa9_classI_Rep2	2		2	585.240918	1168.46728	-1.116	-0.00065312	0.80082	0.00046867	-0.31516	-0.00018445	585.2412612185132	60.614	1.6841	57.844	57.343	59.027	-2.7702	0.037148	0.00075594	NaN	141.52	72	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	203400			55842	5348	46108	46148							-0.11021226283605756
SYREQVEVD	9	Unmodified	_SYREQVEVD_					0	0	0		nc|ENSG00000254893|A6NIZ1|RAP1BL	nc|ENSG00000254893|A6NIZ1|RAP1BL	nc|ENSG00000254893|A6NIZ1|RAP1BL	MULTI-MSMS	OvCa99_classI_Rep5	1	562.7662353515625	2	562.76456	1123.51457	0.06028	3.3923E-05	2.8529	0.0016055	2.9132	0.0016394	562.7660370416633	41.626	6.1897	41.626	40.795	46.985	0					363	141	3	0	0	0	0.3249	1	2773	2773		60.118	5.3419	1	1452500			55843	15354	46109	46149	61007	61007					-0.04224947012608027
SYRFVKVLL	9	Unmodified	_SYRFVKVLL_					0	0	0			REV__tr|A0A553SFT1|A0A553SFT1_NIACIM48familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_09450PE=3SV=1	REV__tr|A0A553SFT1|A0A553SFT1_NIACIM48familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_09450PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	562.342529296875	2	562.844959	1123.67537	-1.3951	-0.0007852	1.1919	0.00067087	-0.20313	-0.00011433	562.8455858330346	143.17	2.4734	142.94	142.26	144.73	-0.22696					78	49	2	0	0	0	0.027462	1	14352	14352		30.504	0	1	36919	+		55844	29619	46110	46150	61008	61008					0.11847472162094164
SYRKFLFETQA	11	Unmodified	_SYRKFLFETQA_					0	0	0		ENSG00000128944|ENST00000249776|KNSTRN;nc|ENSG00000128944|Q9Y448-3|KNSTRN;KNSTRN|p.L252Cfs*14|1|0.04|ENSG00000128944|chr15:40391955-40391956|-/GCTGTGC|frameshift_variant;nc|ENSG00000128944|Q9Y448-2|KNSTRN	ENSG00000128944|ENST00000249776|KNSTRN	ENSG00000128944|ENST00000249776|KNSTRN	MULTI-SECPEP	OvCa99_classI_Rep5	1	463.81231689453125	3	463.910227	1388.70885	-0.5966	-0.00027677	-3.2502	-0.0015078	-3.8468	-0.0017846	463.9087103483602	61.63	0.28332	61.63	61.501	61.784	0					10	6	2	0	0	0	0.026101	1	5442	5442		26.75	8.9166	1	214480			55845	3915	46111	46151	61009	61009					0.03004429143334164
SYRPQHISFI	10	Unmodified	_SYRPQHISFI_					0	0	0			REV__nc|ENSG00000118777|Q9UNQ0-2|ABCG2	REV__nc|ENSG00000118777|Q9UNQ0-2|ABCG2	MULTI-SECPEP	OvCa99_classI_Rep5	1	416.2306213378906	3	416.555895	1246.64586	0.53031	0.0002209	-1.3003	-0.00054163	-0.76995	-0.00032073	416.5553607261497	51.243	0.54948	51.243	51.036	51.585	0					21	12	2	0	0	0	0.026674	1	3924	3924		40.058	14.932	1	749410	+		55846	18415	46112	46152	61010	61010					0.032399081459288936
SYSCLSITVL	10	Unmodified	_SYSCLSITVL_					0	0	0			REV__ENSG00000164265|ENST00000296694|SCGB3A2	REV__ENSG00000164265|ENST00000296694|SCGB3A2	MULTI-MSMS	OvCa99_classI_Rep5	1	543.281494140625	2	543.281	1084.54745	3.175	0.0017249	-3.6006	-0.0019562	-0.42565	-0.00023125	543.2787716913812	97.437	1.1545	97.437	97.093	98.247	0					70	26	4	0	0	0	0.46756	1	10724	10724		58.782	7.4465	1	2991000	+		55847	20963	46113	46153	61011	61011					0.00855543785860391
SYSGTFHSL	9	Unmodified	_SYSGTFHSL_					0	0	0		ENSG00000219481|ENST00000430580|NBPF1;nc|ENSG00000219481|Q3BBV0|NBPF1	ENSG00000219481|ENST00000430580|NBPF1	ENSG00000219481|ENST00000430580|NBPF1	MULTI-MSMS	OvCa99_classI_Rep5	1	499.7337951660156	2	499.732532	997.45051	-0.073526	-3.6743E-05	0.21992	0.0001099	0.1464	7.3158E-05	499.73250466752626	71.688	0.49048	71.688	71.466	71.956	0					32	11	4	0	0	0	0.13482	1	6948	6948		87.754	26.782	1	2752400			55848	9221	46114	46154	61012	61012					-0.0483168237889231
SYSHIMALI	9	Unmodified	_SYSHIMALI_					0	0	0		ENSG00000160752|ENST00000368356|FDPS;nc|ENSG00000160752|P14324-2|FDPS;ENST00000489324.1_1_1:155289446-155290397:+|nuORF	ENSG00000160752|ENST00000368356|FDPS	ENSG00000160752|ENST00000368356|FDPS	MULTI-MSMS	OvCa99_classI_Rep5	1	517.7717895507812	2	517.770603	1033.52665	1.0845	0.00056152	0.0059874	3.1001E-06	1.0905	0.00056462	517.7705176855802	111.26	2.2615	111.26	110.85	113.11	0					129	49	4	0	0	0	0.057208	2	12652	12629;12652		114.59	9.1918	1	9632800			55849	6086	46115	46155	61013;61014	61014					0.011229981968881475
SYSIDDNEEV	10	Unmodified	_SYSIDDNEEV_					0	0	0			REV__tr|A0A7D7AFP4|A0A7D7AFP4_9CLOTMetallo-beta-lactamasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06455PE=4SV=1	REV__tr|A0A7D7AFP4|A0A7D7AFP4_9CLOTMetallo-beta-lactamasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06455PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	585.745849609375	2	585.74349	1169.47243	1.9364	0.0011342	1.122	0.0006572	3.0584	0.0017914	585.7441248191967	100.38	0.58415	100.38	100.11	100.69	0					36	13	4	0	0	0	0.28845	1	11125	11125		82.241	14.747	1	3896500	+		55850	32718	46116	46156	61015	61015					-0.10552967211651776
SYSIDDNEEV	10	Unmodified	_SYSIDDNEEV_					0	0	0			REV__tr|A0A7D7AFP4|A0A7D7AFP4_9CLOTMetallo-beta-lactamasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06455PE=4SV=1	REV__tr|A0A7D7AFP4|A0A7D7AFP4_9CLOTMetallo-beta-lactamasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06455PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	585.74349	1169.47243	-1.2073	-0.00070718	1.569	0.00091906	0.36173	0.00021188	585.7442259647528	100.84	1.586	100.07	99.179	100.77	-0.76401	-0.15316	0.00014429	NaN	82.241	84	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	138030	+		55851	32718	46116	46156							-0.10552967211651776
SYSNTILAVKL	11	Unmodified	_SYSNTILAVKL_					0	0	0		ENST00000465102.5_1_7:5254197-5262304:+|nuORF;nc|ENSG00000157954|Q9Y4P8-3|WIPI2;ENST00000466014.5_1_7:5232953-5270575:+|nuORF;nc|ENSG00000157954|Q9Y4P8-2|WIPI2;nc|ENSG00000157954|Q9Y4P8-4|WIPI2;nc|ENSG00000157954|Q9Y4P8-5|WIPI2;nc|ENSG00000157954|Q9Y4P8-6|WIPI2;ENSG00000157954|ENST00000288828|WIPI2;ENST00000475309.5_1_7:5254056-5256899:+|nuORF	ENST00000465102.5_1_7:5254197-5262304:+|nuORF	ENST00000465102.5_1_7:5254197-5262304:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	604.8470458984375	2	604.847896	1207.68124	-2.8097	-0.0016994	-0.87163	-0.00052721	-3.6813	-0.0022266	604.8472657904025	151.02	1.8082	150.06	148.8	150.6	-0.95647					62	35	3	0	0	0	0.72483	1	12813	12813		5.2201	0	1	24773			55852	5921	46117	46157	61016	61016					0.08570525883101254
SYSPLLREF	9	Unmodified	_SYSPLLREF_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5;LAMA5-GRB7|1|fusion;ENST00000370677.4_1_20:60920618-60942301:-|nuORF;nc|ENSG00000130702|O15230-2|LAMA5;LAMA5-C20orf151|1|fusion	ENSG00000130702|ENST00000252999|LAMA5;LAMA5-C20orf151|1|fusion	LAMA5-C20orf151|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	556.293212890625	2	556.292756	1110.57096	0.14982	8.3346E-05	0.13452	7.4831E-05	0.28434	0.00015818	556.2927379231662	105.1	0.61313	105.1	104.83	105.44	0					36	13	4	0	0	0	0.084918	1	11807	11807		101.25	29.957	1	1828100			55853	4000;14793	46118	46158	61017	61017					0.02009725614720992
SYSPQAFKF	9	Unmodified	_SYSPQAFKF_					0	0	0		nc|ENSG00000131023|O95835-2|LATS1;ENST00000542747.5_1_6:149997344-150023094:-|nuORF;ENSG00000131023|ENST00000543571|LATS1;ENST00000441107.5_1_6:149982867-150018260:-|nuORF	nc|ENSG00000131023|O95835-2|LATS1	nc|ENSG00000131023|O95835-2|LATS1	MULTI-MSMS	OvCa99_classI_Rep5	1	537.7678833007812	2	537.766374	1073.5182	2.4699	0.0013282	-0.70942	-0.0003815	1.7605	0.00094671	537.765839439107	94.029	0.75567	94.029	93.508	94.264	0					31	17	3	0	0	0	0.12515	1	10218	10218		90.37	35.594	1	2063000			55854	4038	46119	46159	61018	61018					-0.01562232448100076
SYSSTFHSL	9	Unmodified	_SYSSTFHSL_					0	0	0		ENSG00000273136|ENST00000620612|NBPF26;ENSG00000270629|ENST00000619423|NBPF14;ENSG00000271425|ENST00000583866|NBPF10;ENSG00000271383|ENST00000651566|NBPF19;ENSG00000266338|ENST00000581897|NBPF15;ENSG00000263956|ENST00000682118|NBPF11;nc|ENSG00000270231|Q3BBV2|NBPF8;nc|ENSG00000273136|B4DH59|NBPF26;nc|ENSG00000270629|Q5TI25|NBPF14;nc|ENSG00000269713|P0DPF3-2|NBPF9;ENSG00000269713|ENST00000698832|NBPF9;ENSG00000268043|ENST00000698835|NBPF12;ENST00000491285.1_1:146215077-146250826:-|nuORF;ENSG00000162825|ENST00000698833|NBPF20	ENSG00000273136|ENST00000620612|NBPF26	ENSG00000273136|ENST00000620612|NBPF26	MULTI-MSMS	OvCa99_classI_Rep5	1	514.7393188476562	2	514.737814	1027.46108	-0.49332	-0.00025393	1.2396	0.00063808	0.74631	0.00038415	514.7380016427544	73.239	0.83412	73.239	72.994	73.829	0					73	20	8	0	0	0	0.068524	1	7169	7169		108.09	31.241	1	6441100			55855	9555	46120	46160	61019	61019					-0.05155699724468832
SYSVLERFV	9	Unmodified	_SYSVLERFV_					0	0	0		nc|ENSG00000150593|Q53EL6-2|PDCD4;ENSG00000150593|ENST00000280154|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	nc|ENSG00000150593|Q53EL6-2|PDCD4	MULTI-MSMS	OvCa99_classI_Rep5	1	550.2908935546875	2	550.292756	1098.57096	0.35939	0.00019777	0.99115	0.00054542	1.3505	0.00074319	550.2932738676362	160.83	0.95601	160.83	160.35	161.31	0					44	18	3	0	0	0	0.56889	1	18842	18842		35.618	0	1	322980			55856	5511	46121	46161	61020	61020					0.025617256147143053
SYTDVWEKW	9	Unmodified	_SYTDVWEKW_					0	0	0		ENST00000484163.5_1_3:52728863-52729338:-|nuORF;ENSG00000016864|ENST00000266014|GLT8D1	ENST00000484163.5_1_3:52728863-52729338:-|nuORF	ENST00000484163.5_1_3:52728863-52729338:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	607.2841186523438	2	607.279846	1212.54514	2.1002	0.0012754	-0.82832	-0.00050302	1.2719	0.00077237	607.2790856551969	112.72	0.53796	112.72	112.48	113.02	0					20	11	2	0	0	0	0.10502	1	12842	12842		95.815	26.188	1	342950			55857	1008	46122	46162	61021	61021					-0.05263168627561754
SYTDVWEKW	9	Unmodified	_SYTDVWEKW_					0	0	0		ENST00000484163.5_1_3:52728863-52729338:-|nuORF;ENSG00000016864|ENST00000266014|GLT8D1	ENST00000484163.5_1_3:52728863-52729338:-|nuORF	ENST00000484163.5_1_3:52728863-52729338:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	607.279846	1212.54514	0.22756	0.00013819	-7.8411	-0.0047618	-7.6136	-0.0046236	607.2751658195177	112.75	0.83756	112.63	112.23	113.07	-0.12174	0.13424	-0.00029905	NaN	95.815	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16039			55858	1008	46122	46162							-0.05263168627561754
SYTDVWEKW	9	Unmodified	_SYTDVWEKW_					0	0	0		ENST00000484163.5_1_3:52728863-52729338:-|nuORF;ENSG00000016864|ENST00000266014|GLT8D1	ENST00000484163.5_1_3:52728863-52729338:-|nuORF	ENST00000484163.5_1_3:52728863-52729338:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	607.279846	1212.54514	2.6457	0.0016067	-9.5454	-0.0057967	-6.8997	-0.00419	607.2739602860937	113.4	0.51434	112.32	112.15	112.66	-1.0753	-0.17332	-0.002369	NaN	95.815	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20543			55859	1008	46122	46162							-0.05263168627561754
SYTDVWEKW	9	Unmodified	_SYTDVWEKW_					0	0	0		ENST00000484163.5_1_3:52728863-52729338:-|nuORF;ENSG00000016864|ENST00000266014|GLT8D1	ENST00000484163.5_1_3:52728863-52729338:-|nuORF	ENST00000484163.5_1_3:52728863-52729338:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	607.279846	1212.54514	1.0916	0.00066292	-8.3998	-0.005101	-7.3082	-0.0044381	607.2745858487107	113.76	0.6357	112.31	112.15	112.78	-1.4461	-0.18547	-0.00097759	NaN	95.815	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29875			55860	1008	46122	46162							-0.05263168627561754
SYTRLFSNF	9	Unmodified	_SYTRLFSNF_					0	0	0		ENST00000490112.1_1_3:33438535-33441732:-|nuORF;ENST00000486388.5_1_3:33438291-33450199:-|nuORF;nc|ENSG00000153560|Q9NZI7-4|UBP1;ENSG00000153560|ENST00000283629|UBP1	ENST00000490112.1_1_3:33438535-33441732:-|nuORF	ENST00000490112.1_1_3:33438535-33441732:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	567.7839965820312	2	567.782556	1133.55056	2.0872	0.0011851	0.0013645	7.7474E-07	2.0885	0.0011858	567.7823112910302	106.73	1.3011	106.73	106.05	107.36	0					60	29	4	0	0	0	0.023079	1	12018	12018		143.37	33.254	1	3326900			55861	5683	46123	46163	61022	61022					-0.010874450451183293
SYTSHTNEI	9	Unmodified	_SYTSHTNEI_					0	0	0		ENSG00000112936|ENST00000313164|C7	ENSG00000112936|ENST00000313164|C7	ENSG00000112936|ENST00000313164|C7	MULTI-MSMS	OvCa99_classI_Rep5	1	526.2380981445312	2	526.238178	1050.4618	-0.20342	-0.00010705	-0.075156	-3.955E-05	-0.27858	-0.0001466	526.2380239327877	46.665	0.8819	46.665	46.369	47.251	0					30	14	3	0	0	0	0.28934	1	3308	3308		64.207	8.7031	1	778950			55862	2937	46124	46164	61023	61023					-0.06140905075426417
SYTSPPLL	8	Unmodified	_SYTSPPLL_					0	0	0			REV__ENSG00000171501|ENST00000373688|OR1N2	REV__ENSG00000171501|ENST00000373688|OR1N2	MULTI-SECPEP	OvCa99_classI_Rep5	1	439.5882263183594	2	439.236919	876.459284	1.0396	0.00045662	0.34548	0.00015175	1.385	0.00060836	439.2368940368781	69.162	0.29089	69.162	68.977	69.268	0					9	6	2	0	0	0	0.028476	1	6556	6556		62.978	22.406	1	249880	+		55863	21620	46125	46165	61024	61024					0.01611291257574976
SYTSVKENF	9	Unmodified	_SYTSVKENF_					0	0	0		FAM120B|p.R410Sfs*77|1|0.03|ENSG00000112584|chr6:170318619-170318619|G/-|frameshift_variant;nc|ENSG00000112584|Q96EK7-2|FAM120B;ENSG00000112584|ENST00000476287|FAM120B	FAM120B|p.R410Sfs*77|1|0.03|ENSG00000112584|chr6:170318619-170318619|G/-|frameshift_variant	FAM120B|p.R410Sfs*77|1|0.03|ENSG00000112584|chr6:170318619-170318619|G/-|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	537.7601318359375	2	537.758746	1073.50294	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.145	1	65.145	64.645	65.645	0								0	0	0	0.028596	1	5963	5963		113.41	22.635	1				55864	2912	46126	46166	61025	61025					-0.030871440359533153
SYTVKVEEI	9	Unmodified	_SYTVKVEEI_					0	0	0		tr|A0A7D6VYU4|A0A7D6VYU4_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17860PE=4SV=1	tr|A0A7D6VYU4|A0A7D6VYU4_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17860PE=4SV=1	tr|A0A7D6VYU4|A0A7D6VYU4_9CLOTFtsX-likepermeasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17860PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	534.2843627929688	2	534.284597	1066.55464	0.90056	0.00048116	-0.54123	-0.00028917	0.35934	0.00019199	534.284212437697	153.37	2.6517	153.37	152.52	155.17	0					122	56	3	0	0	0	0.33652	1	17896	17896		58.782	3.2778	1	129630			55865	35339	46127	46167	61026	61026					0.02402599657943938
SYVGWGRVW	9	Unmodified	_SYVGWGRVW_					0	0	0			REV__ENST00000482723.1_1_17:72439553-72445018:+|nuORF	REV__ENST00000482723.1_1_17:72439553-72445018:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.329833984375	2	555.279983	1108.54541	-0.44058	-0.00024465	-4.1634	-0.0023119	-4.604	-0.0025565	555.2776199697246	41.619	0.34611	41.619	41.462	41.809	0					13	7	3	0	0	0	0.027462	1	2609	2609		18.324	0	1	105750	+		55866	26509	46128	46168	61027	61027					-0.004517041170629454
SYVHKVPSF	9	Unmodified	_SYVHKVPSF_					0	0	0		ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MULTI-MSMS	OvCa99_classI_Rep5	1	532.2836303710938	2	532.282192	1062.54983	-0.67835	-0.00036107	1.3118	0.00069823	0.63343	0.00033716	532.2829594496357	64.266	0.90092	64.266	63.974	64.875	0					42	21	4	0	0	0	0.22035	1	5831	5831		72.879	14.097	1	2108100			55867	3568	46129	46169	61028	61028					0.021057603058579843
SYVHKVPSF	9	Unmodified	_SYVHKVPSF_					0	0	0		ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MULTI-MATCH	OvCa9_classI_Rep2	2		2	532.282192	1062.54983	-1.4877	-0.00079189	-2.0926	-0.0011139	-3.5803	-0.0019057	532.2805926545363	67.23	0.89094	64.569	64.298	65.189	-2.661	0.055468	-0.0015937	NaN	72.879	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21776			55868	3568	46129	46169							0.021057603058579843
SYVHKVPSF	9	Unmodified	_SYVHKVPSF_					0	0	0		ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	ENSG00000123066|ENST00000281928|MED13L	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	532.282192	1062.54983	-0.078789	-4.1938E-05	-0.65634	-0.00034936	-0.73513	-0.0003913	532.2799476248039	68.196	1.0287	64.706	64.333	65.362	-3.4902	0.19232	-6.4701E-05	NaN	72.879	30	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31808			55869	3568	46129	46169							0.021057603058579843
SYVHYVFRL	9	Unmodified	_SYVHYVFRL_					0	0	0		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-MSMS	OvCa99_classI_Rep5	1	592.8214111328125	2	592.316566	1182.61858	2.2627	0.0013402	-0.0069254	-4.102E-06	2.2558	0.0013361	592.3163482786078	95.182	1.1338	95.182	94.949	96.082	0					54	26	4	0	0	0	0.28934	1	10380	10380		64.207	24.954	1	2886200			55870	2585	46130	46170	61029	61029					0.034574246055626645
SYVKVNRR	8	Unmodified	_SYVKVNRR_					0	0	0		nc|ENSG00000140937|P55287-2|CDH11	nc|ENSG00000140937|P55287-2|CDH11	nc|ENSG00000140937|P55287-2|CDH11	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.2560424804688	2	511.298707	1020.58286	0.6249	0.00031951	3.8867	0.0019873	4.5116	0.0023068	511.30063855421736	141.06	0.35205	141.06	140.78	141.13	0					9	6	2	0	0	0	0.028476	1	16450	16450		52.299	15.271	1	19280			55871	15058	46131	46171	61030	61030					0.07339387148567766
SYVNMDLSPV	10	Unmodified	_SYVNMDLSPV_					0	0	0		nc|ENSG00000073737|Q9BPW9-4|DHRS9;nc|ENSG00000073737|Q9BPW9-2|DHRS9;nc|ENSG00000073737|Q9BPW9-3|DHRS9;ENSG00000073737|ENST00000674881|DHRS9	nc|ENSG00000073737|Q9BPW9-4|DHRS9	nc|ENSG00000073737|Q9BPW9-4|DHRS9	MULTI-MSMS	OvCa99_classI_Rep5	1	562.7658081054688	2	562.768257	1123.52196	0.060279	3.3923E-05	-3.716	-0.0020913	-3.6557	-0.0020573	562.7660370416633	41.626	6.1897	41.626	40.795	46.985	0					363	141	3	0	0	0	0.59703	1	2534	2534		42.396	1.618	1	1452500			55872	14890	46132	46172	61031	61031					-0.03485930736565024
SYVRIVRTI	9	Unmodified	_SYVRIVRTI_					0	0	0		nc|ENSG00000262628|P47884|OR1D4;ENSG00000262628|ENST00000575751|OR1D5	nc|ENSG00000262628|P47884|OR1D4	nc|ENSG00000262628|P47884|OR1D4	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8392944335938	2	553.837665	1105.66078	-0.088666	-4.9107E-05	2.9397	0.0016281	2.851	0.001579	553.8392963935497	104.35	2.2373	102.92	102.5	104.74	-1.4347					98	42	5	0	0	0	0.42676	1	7267	7267		49.442	8.8689	1	675710			55873	9510	46133	46173	61032	61032					0.11217400013947554
SYVRSLPFF	9	Unmodified	_SYVRSLPFF_					0	0	0		ENSG00000170043|ENST00000303731|TRAPPC1	ENSG00000170043|ENST00000303731|TRAPPC1	ENSG00000170043|ENST00000303731|TRAPPC1	MULTI-MSMS	OvCa99_classI_Rep5	1	558.2993774414062	2	558.297842	1114.58113	2.7711	0.0015471	-0.5468	-0.00030528	2.2243	0.0012418	558.2975158837085	121.64	1.8468	121.64	121.34	123.18	0					95	39	3	0	0	0	0.16264	1	13999	13999		82.75	22.347	1	4926200			55874	7068	46134	46174	61033	61033					0.028423333399587136
SYWLASAAP	9	Unmodified	_SYWLASAAP_					0	0	0		ENSG00000081052|ENST00000396625|COL4A4;COL4A4|p.L1549I|1|0.12|ENSG00000081052|chr2:227008182-227008182|G/T|missense_variant	ENSG00000081052|ENST00000396625|COL4A4	ENSG00000081052|ENST00000396625|COL4A4	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.22802734375	2	483.239993	964.465432	-0.43118	-0.00020836	-4.1207	-0.0019913	-4.5519	-0.0021997	483.23771799653144	48.379	0.38133	48.379	48.204	48.585	0					10	8	2	0	0	0	0.027462	1	3527	3527		24.203	1.1603	1	138540			55875	1652	46135	46175	61034	61034					-0.018221905109157888
SYYETCATYG	10	Unmodified	_SYYETCATYG_					0	0	0		nc|ENSG00000135439|Q99490-2|AGAP2;nc|ENSG00000135439|Q99490|AGAP2;ENSG00000135439|ENST00000547588|AGAP2	nc|ENSG00000135439|Q99490-2|AGAP2	nc|ENSG00000135439|Q99490-2|AGAP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.8197631835938	2	579.226422	1156.43829	-1.0375	-0.00060093	-0.26161	-0.00015153	-1.2991	-0.00075246	579.2262049626304	33.973	0.28875	33.973	33.824	34.113	0					8	5	2	0	0	0	0.026915	1	1618	1618		35.618	7.736	1	30035			55876	4381	46136	46176	61035	61035					-0.13367086904281678
TAAALLSSPL	10	Unmodified	_TAAALLSSPL_					0	0	0			REV__ENSG00000173302|ENST00000309926|GPR148	REV__ENSG00000173302|ENST00000309926|GPR148	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.2880859375	2	472.276575	942.538597	0.1427	6.7396E-05	-0.12813	-6.0513E-05	0.014575	6.8832E-06	472.27634828483934	72.949	0.73915	72.949	72.374	73.113	0					34	18	4	0	0	0	0.026553	1	7067	7067		56.721	0	1	1876300	+		55877	21766	46137	46177	61036	61036					0.06502938211713172
TAAEILFQTL	10	Unmodified	_TAAEILFQTL_					0	0	0			REV__tr|A0A7D6VQF1|A0A7D6VQF1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01880PE=3SV=1	REV__tr|A0A7D6VQF1|A0A7D6VQF1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01880PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8081665039062	2	553.808239	1105.60193	-1.235	-0.00068394	0.65958	0.00036528	-0.57539	-0.00031866	553.8086492861518	108.6	1.5356	106.88	106.57	108.1	-1.7256					78	29	4	0	0	0	0.20836	1	9977	9977		93.143	2.5424	1	413750	+		55878	31320	46138	46178	61037	61037					0.05334878928965736
TAAETAVADV	10	Unmodified	_TAAETAVADV_					0	0	0			REV__ENSG00000118197|ENST00000331314|DDX59	REV__ENSG00000118197|ENST00000331314|DDX59	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.7650146484375	2	474.237647	946.460741	0.31297	0.00014842	-0.31771	-0.00015067	-0.0047402	-2.248E-06	474.23734812744584	48.21	1.0803	45.102	44.838	45.918	-3.1077					51	20	3	0	0	0	0.02658	1	2673	2673		37.812	0	1	233610	+		55879	18383	46139	46179	61038	61038					-0.014631194443268214
TAAFPTNPKL	10	Unmodified	_TAAFPTNPKL_					0	0	0			REV__TGM3|p.L630Pfs*5|1|0.56|ENSG00000125780|chr20:2339940-2339959|GCTGATGGTGGAGGGAAGCG/-|frameshift_variant	REV__TGM3|p.L630Pfs*5|1|0.56|ENSG00000125780|chr20:2339940-2339959|GCTGATGGTGGAGGGAAGCG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	530.2928466796875	2	530.295299	1058.57605	-0.59337	-0.00031466	1.3647	0.00072367	0.77129	0.00040901	530.2955837744863	109.66	0.84151	109.49	109.17	110.01	-0.17237					21	16	2	0	0	0	0.53807	1	10320	10320		49.536	5.4192	1	56420	+		55880	18745	46140	46180	61039	61039					0.049100294773325004
TAAFPTNPKL	10	Unmodified	_TAAFPTNPKL_					0	0	0			REV__TGM3|p.L630Pfs*5|1|0.56|ENSG00000125780|chr20:2339940-2339959|GCTGATGGTGGAGGGAAGCG/-|frameshift_variant	REV__TGM3|p.L630Pfs*5|1|0.56|ENSG00000125780|chr20:2339940-2339959|GCTGATGGTGGAGGGAAGCG/-|frameshift_variant	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	530.295299	1058.57605	-0.59337	-0.00031466	1.3647	0.00072367	0.77129	0.00040901	530.2955837744863	109.66	0.84151	109.49	109.17	110.01	-0.17237	-0.0083698	2.7851E-05	NaN	49.536	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56420	+		55881	18745	46140	46180							0.049100294773325004
TAAFPTNPKL	10	Unmodified	_TAAFPTNPKL_					0	0	0			REV__TGM3|p.L630Pfs*5|1|0.56|ENSG00000125780|chr20:2339940-2339959|GCTGATGGTGGAGGGAAGCG/-|frameshift_variant	REV__TGM3|p.L630Pfs*5|1|0.56|ENSG00000125780|chr20:2339940-2339959|GCTGATGGTGGAGGGAAGCG/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	530.295299	1058.57605	0.63725	0.00033793	0.85453	0.00045315	1.4918	0.00079108	530.2951593127619	110.62	0.97421	109.48	109.14	110.11	-1.1444	-0.016823	-0.00051318	NaN	49.536	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48054	+		55882	18745	46140	46180							0.049100294773325004
TAAFPTNPKL	10	Unmodified	_TAAFPTNPKL_					0	0	0			REV__TGM3|p.L630Pfs*5|1|0.56|ENSG00000125780|chr20:2339940-2339959|GCTGATGGTGGAGGGAAGCG/-|frameshift_variant	REV__TGM3|p.L630Pfs*5|1|0.56|ENSG00000125780|chr20:2339940-2339959|GCTGATGGTGGAGGGAAGCG/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	530.295299	1058.57605	-0.26203	-0.00013896	1.921	0.0010187	1.6589	0.00087973	530.2959206198283	111.12	0.68393	109.52	109.17	109.86	-1.6011	0.025193	0.00061787	NaN	49.536	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61209	+		55883	18745	46140	46180							0.049100294773325004
TAAGIFFITD	10	Unmodified	_TAAGIFFITD_					0	0	0		nc|ENSG00000244694|Q6ZW05-2|PTCHD4;nc|ENSG00000244694|Q6ZW05-4|PTCHD4;ENSG00000244694|ENST00000339488|PTCHD4;nc|ENSG00000244694|Q6ZW05|PTCHD4	nc|ENSG00000244694|Q6ZW05-2|PTCHD4	nc|ENSG00000244694|Q6ZW05-2|PTCHD4	MULTI-SECPEP	OvCa9_classI_Rep2	2	527.7893676757812	2	528.274032	1054.53351	-1.1638	-0.00061481	-2.2565	-0.0011921	-3.4203	-0.0018069	528.2728169378486	68.99	1.0464	66.37	65.869	66.915	-2.6203					27	20	2	0	0	0	0.026956	1	5521	5521		19.997	0	1	51776			55884	9401	46141	46181	61040	61040					0.008426343491009902
TAAHVGLLVE	10	Unmodified	_TAAHVGLLVE_					0	0	0			REV__nc|ENSG00000163626|Q8N8Q8-2|COX18	REV__nc|ENSG00000163626|Q8N8Q8-2|COX18	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.25982666015625	2	505.287474	1008.5604	-1.1189	-0.00056537	0.15973	8.0712E-05	-0.95918	-0.00048466	505.28721767867984	80.535	1.027	77.825	77.516	78.543	-2.7106					35	20	3	0	0	0	0.026523	1	6656	6656		36.447	0	1	120780	+		55885	20864	46142	46182	61041	61041					0.056457429602915
TAAILVFVI	9	Unmodified	_TAAILVFVI_					0	0	0			REV__tr|A0A7D6VS41|A0A7D6VS41_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08005PE=4SV=1	REV__tr|A0A7D6VS41|A0A7D6VS41_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08005PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	474.2392883300781	2	473.802229	945.589904	0.56883	0.00026951	-4.4155	-0.0020921	-3.8466	-0.0018225	473.80007276769163	48.172	0.356	45.064	44.888	45.244	-3.1077					8	6	2	0	0	0	0.027462	1	2657	2657		31.955	1.4512	1	12698	+		55886	31467	46143	46183	61042	61042					0.11493306976421991
TAALMPGHQL	10	Unmodified	_TAALMPGHQL_					0	0	0		ENST00000498474.2_1_X:7003468-7066154:-|nuORF	ENST00000498474.2_1_X:7003468-7066154:-|nuORF	ENST00000498474.2_1_X:7003468-7066154:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	519.7742919921875	2	519.773677	1037.5328	1.2718	0.00066103	-0.71745	-0.00037291	0.55432	0.00028812	519.7732287380198	127.54	1.531	127.31	126.99	128.52	-0.23578					82	30	5	0	0	0	0.55359	1	12492	12492		47.657	1.6851	1	538520			55887	12825	46144	46184	61043	61043					0.015535164283846825
TAALMPGHQL	10	Unmodified	_TAALMPGHQL_					0	0	0		ENST00000498474.2_1_X:7003468-7066154:-|nuORF	ENST00000498474.2_1_X:7003468-7066154:-|nuORF	ENST00000498474.2_1_X:7003468-7066154:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.7745361328125	2	519.773677	1037.5328	0.17431	9.0599E-05	0.40447	0.00021023	0.57878	0.00030083	519.7738144415306	128.63	2.6649	127.17	126.07	128.73	-1.4565					98	52	4	0	0	0	0.49558	1	12323	12323		54.776	4.7518	1	448430			55888	12825	46144	46184	61044	61044					0.015535164283846825
TAAPIELVVN	10	Unmodified	_TAAPIELVVN_					0	0	0			REV__ENST00000493723.5_1_7:24756537-24789393:-|nuORF	REV__ENST00000493723.5_1_7:24756537-24789393:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.2677001953125	2	513.795132	1025.57571	0.28712	0.00014752	3.0123	0.0015477	3.2994	0.0016952	514.2986923972851	84.066	1.0352	81.403	80.926	81.961	-2.6629					27	21	2	0	0	0	0.026734	1	7084	7084		31.53	20.019	1	52319	+		55889	26711	46145	46185	61045	61045					0.06394609757489889
TAAPPLPLI	9	Unmodified	_TAAPPLPLI_					0	0	0			REV__IRS1|p.S794Afs*149|1|0.14|ENSG00000169047|chr2:226796360-226796360|A/-|frameshift_variant	REV__IRS1|p.S794Afs*149|1|0.14|ENSG00000169047|chr2:226796360-226796360|A/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	446.2620544433594	2	446.778754	891.542954	0.014676	6.557E-06	-3.5474	-0.0015849	-3.5328	-0.0015784	446.7770534222139	37.655	0.36642	37.655	37.485	37.851	0					12	7	2	0	0	0	0.027462	1	2063	2063		11.511	0	1	53884	+		55890	28313	46146	46186	61046	61046					0.0928444742528427
TAARLTASRA	10	Unmodified	_TAARLTASRA_					0	0	0		ENST00000478727.5_1_10:86007469-86008730:+|nuORF;ENST00000359452.8_1_10:86007469-86008730:+|nuORF;ENST00000483660.5_1_10:86004840-86008730:+|nuORF;ENST00000483744.5_1_10:86007469-86008730:+|nuORF	ENST00000478727.5_1_10:86007469-86008730:+|nuORF	ENST00000478727.5_1_10:86007469-86008730:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	509.2930603027344	2	509.293622	1016.57269	1.315	0.00066975	-1.3687	-0.00069707	-0.053654	-2.7326E-05	509.2927862417461	29.04	0.88334	26.331	26.18	27.063	-2.7097					31	18	3	0	0	0	0.80581	1	678	678		18.262	3.598	1	75325			55891	10751	46147	46187	61047	61047					0.06506779423307307
TAASALPRRSQ	11	Unmodified	_TAASALPRRSQ_					0	0	0			REV__ENST00000476041.1_1_1:36859692-36863455:-|nuORF	REV__ENST00000476041.1_1_1:36859692-36863455:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	579.3225708007812	2	579.322911	1156.63127	-1.5587	-0.00090299	1.3959	0.0008087	-0.16277	-9.4294E-05	579.3236686827205	50.2	1.538	47.406	47.033	48.571	-2.794					84	30	4	0	0	0	0.54114	1	3251	3251		50.034	5.6563	1	611210	+		55892	26366	46148	46188	61048	61048					0.05921835997787639
TAATHIIL	8	Unmodified	_TAATHIIL_					0	0	0			REV__CACNA1G|p.L1529Qfs*112|1|0.06|ENSG00000006283|chr17:50607900-50607901|TG/-|frameshift_variant	REV__CACNA1G|p.L1529Qfs*112|1|0.06|ENSG00000006283|chr17:50607900-50607901|TG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	420.2530212402344	2	420.252903	838.491253	0.41101	0.00017273	-0.075014	-3.1525E-05	0.336	0.0001412	420.2527341495351	108.37	2.424	108.15	107.78	110.2	-0.22498					119	48	4	0	0	0	0.69415	1	10175	10175		44.531	2.0566	1	477420	+		55893	15728	46149	46189	61049	61049					0.06554703731376321
TAATHIIL	8	Unmodified	_TAATHIIL_					0	0	0			REV__CACNA1G|p.L1529Qfs*112|1|0.06|ENSG00000006283|chr17:50607900-50607901|TG/-|frameshift_variant	REV__CACNA1G|p.L1529Qfs*112|1|0.06|ENSG00000006283|chr17:50607900-50607901|TG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	420.25250244140625	2	420.252903	838.491253	0.28048	0.00011787	0.0022746	9.559E-07	0.28276	0.00011883	420.25282934845166	110.01	2.9881	108.41	108.07	111.06	-1.6011					122	56	5	0	0	0	0.52992	1	10119	10119		74.517	0	1	621620	+		55894	15728	46149	46189	61050	61050					0.06554703731376321
TADAEQQC	8	Unmodified	_TADAEQQC_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	OvCa9_classI_Rep3	3	433.171630859375	2	433.17145	864.328346	1.9505	0.00084491	-0.84733	-0.00036704	1.1032	0.00047787	433.17100760562903	63.152	4.2639	60.118	58.202	62.466	-3.0339					141	92	2	0	0	0	0.64026	1	2357	2357		55.504	22.692	1	38128	+		55895	22662	46150	46190	61051	61051					-0.10924467452787212
TAFFLSGDL	9	Unmodified	_TAFFLSGDL_					0	0	0		tr|A0A553SGK0|A0A553SGK0_NIACIPhosphateABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_11020PE=4SV=1	tr|A0A553SGK0|A0A553SGK0_NIACIPhosphateABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_11020PE=4SV=1	tr|A0A553SGK0|A0A553SGK0_NIACIPhosphateABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_11020PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	485.78839111328125	2	485.74765	969.480748	-1.2327	-0.0005988	1.7464	0.00084833	0.51369	0.00024953	485.74829596936064	87.598	0.51588	85.422	85.19	85.706	-2.1768					17	9	2	0	0	0	0.027455	1	5296	5296		42.396	3.3746	1	22546			55896	33166	46151	46191	61052	61052					-0.00521323713712718
TAFILKEKFTR	11	Unmodified	_TAFILKEKFTR_					0	0	0		ENST00000453131.1_3_3:195310061-195310790:-|nuORF	ENST00000453131.1_3_3:195310061-195310790:-|nuORF	ENST00000453131.1_3_3:195310061-195310790:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	451.9324035644531	3	451.934484	1352.78162	-4.6838	-0.0021168	0.73447	0.00033193	-3.9494	-0.0017848	451.93466630728255	157.42	2.9259	155.87	154.82	157.75	-1.545					169	85	3	0	0	0	0.72069	1	15566	15566		22.562	0	1	50469			55897	12063	46152	46192	61053	61053					0.11934182936715843
TAFLPTTLLNR	11	Unmodified	_TAFLPTTLLNR_					0	0	0			REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|157|2|sense	REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|157|2|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	416.24493408203125	3	416.243317	1245.70812	1.0605	0.00044145	0.099509	4.142E-05	1.1601	0.00048287	416.24335289634735	72.461	2.2002	72.461	71.707	73.907	0					169	54	5	0	0	0	0.097603	1	7049	7049		97.597	39.367	1	16175000	+		55898	28198	46153	46193	61054	61054					0.09509634494270358
TAGAKLLF	8	Unmodified	_TAGAKLLF_					0	0	0		nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;STAT2|p.V424Dfs*116|1|0.05|ENSG00000170581|chr12:56349496-56349497|-/GAGTGGGATCTATGGATGTCTGGTAGAT|frameshift_variant;ENST00000557156.1_1_12:56745011-56748252:-|nuORF	nc|ENSG00000170581|P52630-4|STAT2;ENST00000557156.1_1_12:56745011-56748252:-|nuORF	nc|ENSG00000170581|P52630-4|STAT2	MULTI-MSMS	OvCa99_classI_Rep5	1	410.75103759765625	2	410.749996	819.485439	2.898	0.0011903	-0.36676	-0.00015065	2.5312	0.0010397	410.7497001887256	87.437	1.4534	87.437	87.054	88.508	0					73	34	3	0	0	0	0.45246	2	9240	9240;9269		82.305	26.1	1	2576700			55899	7120;13682	46154	46194	61055;61056	61055					0.06847605219718389
TAGALIGRLV	10	Unmodified	_TAGALIGRLV_					0	0	0			REV__nc|ENSG00000127838|Q8N490-2|PNKD	REV__nc|ENSG00000127838|Q8N490-2|PNKD	MULTI-MSMS	OvCa9_classI_Rep2	2	485.8052673339844	2	485.805834	969.597115	-0.75076	-0.00036472	0.6122	0.00029741	-0.13856	-6.7315E-05	485.80603826412454	56.324	1.6845	53.52	52.978	54.662	-2.804					75	33	3	0	0	0	0.66721	1	3949	3949		34.173	0	1	355580	+		55900	18828	46155	46195	61057	61057					0.11110039576863073
TAGALLPCPP	10	Unmodified	_TAGALLPCPP_					0	0	0			REV__ENST00000468403.1_1_1:153750160-153750403:+|nuORF	REV__ENST00000468403.1_1_1:153750160-153750403:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.2679748535156	2	470.252046	938.489538	-0.54923	-0.00025828	-0.94378	-0.00044382	-1.493	-0.00070209	470.25226363046653	43.768	0.2044	40.76	40.589	40.793	-3.0074					6	3	2	0	0	0	0.026871	1	2116	2116		29.15	2.3535	1	13945	+		55901	26222	46156	46196	61058	61058					0.01783326651104744
TAGANISNYEV	11	Unmodified	_TAGANISNYEV_					0	0	0		tr|A0A7D6VXN0|A0A7D6VXN0_9CLOTBiotin/lipoyl-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00335PE=4SV=1	tr|A0A7D6VXN0|A0A7D6VXN0_9CLOTBiotin/lipoyl-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00335PE=4SV=1	tr|A0A7D6VXN0|A0A7D6VXN0_9CLOTBiotin/lipoyl-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00335PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	568.8458862304688	2	569.772385	1137.53022	-1.2883	-0.00073405	1.8671	0.0010638	0.57883	0.0003298	569.7733148860212	121.26	0.93969	121.06	120.75	121.69	-0.19718					34	18	2	0	0	0	0.025551	1	11782	11782		30.569	7.0462	1	27387			55902	35292	46157	46197	61059	61059					-0.03304660495564349
TAGARRVLAA	10	Unmodified	_TAGARRVLAA_					0	0	0			REV__ENSG00000269313|ENST00000595224|MAGIX	REV__ENSG00000269313|ENST00000595224|MAGIX	MULTI-MSMS	OvCa9_classI_Rep2	2	493.29876708984375	2	493.298707	984.582862	3.1299	0.001544	-3.147	-0.0015524	-0.017108	-8.4391E-06	493.29693905803276	26.988	0.77444	24.278	24.097	24.871	-2.7097					47	21	3	0	0	0	0.69073	1	419	419		31.53	5.9558	1	72756	+		55903	23600	46158	46198	61060	61060					0.08995387148559075
TAGFSQIW	8	Unmodified	_TAGFSQIW_					0	0	0		nc|ENSG00000138311|Q70YC5-3|ZNF365	nc|ENSG00000138311|Q70YC5-3|ZNF365	nc|ENSG00000138311|Q70YC5-3|ZNF365	MULTI-SECPEP	OvCa9_classI_Rep4_	4	455.26727294921875	2	455.226885	908.439217	0.58985	0.00026851	3.3368	0.001519	3.9267	0.0017875	455.2283309391442	61.136	0.88014	57.706	57.345	58.225	-3.43					23	17	2	0	0	0	0.028476	1	4229	4229		13.775	0	1	39108			55904	15044	46159	46199	61061	61061					-0.01866459682378263
TAGIVGGLSTV	11	Unmodified	_TAGIVGGLSTV_					0	0	0		ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	ENSG00000165678|ENST00000372134|GHITM	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.79290771484375	2	487.779482	973.544411	0.04339	2.1165E-05	0.49081	0.00023941	0.5342	0.00026057	487.77954745170064	73.721	0.42785	73.721	73.44	73.868	0					17	10	2	0	0	0	0.02557	1	7237	7237		24.519	7.1542	1	683820			55905	6590	46160	46200	61062	61062					0.05658036723389159
TAGLEKVQ	8	Unmodified	_TAGLEKVQ_					0	0	0		nc|ENSG00000087995|Q96IZ6-2|METTL2A;nc|ENSG00000165055|Q6P1Q9-2|METTL2B;ENST00000482555.5_1_7:128117100-128141967:+|nuORF;ENST00000333483.14_1_17:60501544-60526087:+|nuORF;ENSG00000165055|ENST00000262432|METTL2B;ENSG00000087995|ENST00000311506|METTL2A	nc|ENSG00000087995|Q96IZ6-2|METTL2A	nc|ENSG00000087995|Q96IZ6-2|METTL2A	MULTI-SECPEP	OvCa99_classI_Rep5	1	423.2585144042969	2	423.239993	844.465432	-0.14819	-6.272E-05	0.31618	0.00013382	0.16799	7.1101E-05	423.2400213557061	38.995	0.62685	38.995	38.836	39.463	0					20	13	2	0	0	0	0.028476	1	2321	2321		35.618	0	1	181500			55906	1780	46161	46201	61063	61063					0.03697809489096926
TAGLGIGVLI	10	Unmodified	_TAGLGIGVLI_					0	0	0			REV__tr|A0A7D6ZH49|A0A7D6ZH49_9CLOTDHA2familyeffluxMFStransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_01470PE=3SV=1	REV__tr|A0A7D6ZH49|A0A7D6ZH49_9CLOTDHA2familyeffluxMFStransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_01470PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	457.7760009765625	2	457.289485	912.564418	-0.45641	-0.00020871	0.42073	0.00019239	-0.035678	-1.6315E-05	457.2897495232626	104.11	0.62983	101.99	101.69	102.32	-2.1192					25	11	3	0	0	0	0.026669	1	9431	9431		47.916	10.756	1	31314	+		55907	32016	46162	46202	61064	61064					0.10463832454001931
TAGRVLEL	8	Unmodified	_TAGRVLEL_					0	0	0		ENSG00000165934|ENST00000298875|CPSF2	ENSG00000165934|ENST00000298875|CPSF2	ENSG00000165934|ENST00000298875|CPSF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	429.75689697265625	2	429.75581	857.497067	0.41401	0.00017792	-1.1477	-0.00049321	-0.73365	-0.00031529	429.7552163560831	79.291	1.7763	76.54	75.945	77.722	-2.7514					93	36	4	0	0	0	0.35821	2	6434	6423;6434		96.19	13.885	1	515140			55908	6616	46163	46203	61065;61066	61066					0.06261802243022885
TAGRVLEL	8	Unmodified	_TAGRVLEL_					0	0	0		ENSG00000165934|ENST00000298875|CPSF2	ENSG00000165934|ENST00000298875|CPSF2	ENSG00000165934|ENST00000298875|CPSF2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	429.75581	857.497067	-0.42729	-0.00018363	0.34739	0.00014929	-0.079896	-3.4336E-05	429.7558143896826	78.321	2.3576	76.581	75.672	78.03	-1.7398	0.020397	0.00049579	NaN	96.19	102	45	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	264080			55909	6616	46163	46203							0.06261802243022885
TAGRWRGSRRA	11	Unmodified	_TAGRWRGSRRA_					0	0	0		ENST00000398125.5_1_4:2916713-2930247:+|nuORF;ENST00000513328.6_1_4:2916713-2930247:+|nuORF	ENST00000398125.5_1_4:2916713-2930247:+|nuORF	ENST00000398125.5_1_4:2916713-2930247:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	425.7750549316406	3	425.237671	1272.69118	-1.2653	-0.00053805	3.6883	0.0015684	2.423	0.0010304	425.23926268707675	68.187	1.2367	65.542	65.254	66.49	-2.6453					87	24	5	0	0	0	0.025496	1	5445	5445		17.167	0	1	231780			55910	11368	46164	46204	61067	61067					0.06574571451687916
TAGRWRGSRRA	11	Unmodified	_TAGRWRGSRRA_					0	0	0		ENST00000398125.5_1_4:2916713-2930247:+|nuORF;ENST00000513328.6_1_4:2916713-2930247:+|nuORF	ENST00000398125.5_1_4:2916713-2930247:+|nuORF	ENST00000398125.5_1_4:2916713-2930247:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		3	425.237671	1272.69118	1.3588	0.00057782	1.3082	0.00055628	2.667	0.0011341	425.90611355258284	68.573	0.55217	65.759	65.361	65.914	-2.8143	0.089213	-0.0023895	NaN	26.75	26	10	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40385			55911	11368	46164	46204							0.06574571451687916
TAGVLTGLGLA	11	Unmodified	_TAGVLTGLGLA_					0	0	0		ENSG00000100156|ENST00000681075|SLC16A8	ENSG00000100156|ENST00000681075|SLC16A8	ENSG00000100156|ENST00000681075|SLC16A8	MULTI-MSMS	OvCa9_classI_Rep3	3	486.7892150878906	2	486.78985	971.565146	0.24536	0.00011944	-0.56855	-0.00027677	-0.32319	-0.00015733	486.7894405313225	128.9	1.0381	127.81	127.52	128.56	-1.0933					33	20	2	0	0	0	0.58572	1	10166	10166		45.972	1.5951	1	48985			55912	2018	46165	46205	61068	61068					0.078226271030303
TAGVRHII	8	Unmodified	_TAGVRHII_					0	0	0			REV__ENST00000495277.1_1_22:50705667-50705907:-|nuORF	REV__ENST00000495277.1_1_22:50705667-50705907:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	433.7492980957031	2	433.763969	865.513385	0.56171	0.00024365	-2.7496	-0.0011927	-2.1879	-0.00094903	433.7638158683256	73.616	0.42836	73.616	73.4	73.829	0					15	10	2	0	0	0	0.028476	1	7258	7258		12.207	0	1	294490	+		55913	26743	46166	46206	61069	61069					0.07524928199791248
TAGYRWAM	8	Unmodified	_TAGYRWAM_					0	0	0			REV__ENST00000439461.5_1_19:52772835-52786550:+|nuORF	REV__ENST00000439461.5_1_19:52772835-52786550:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.75299072265625	2	478.226362	954.438172	-0.018807	-8.9938E-06	2.7209	0.0013012	2.7021	0.0012922	478.2274101256153	52.126	0.60693	48.918	48.487	49.094	-3.208					15	11	2	0	0	0	0.028476	1	3052	3052		19.36	0	1	21028	+		55914	25821	46167	46207	61070	61070					-0.04086997322940533
TAHATTLLW	9	Unmodified	_TAHATTLLW_					0	0	0			REV__nc|ENSG00000142163|Q8WZA6|OR1E3	REV__nc|ENSG00000142163|Q8WZA6|OR1E3	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.30792236328125	2	507.274367	1012.53418	-0.92746	-0.00047048	-3.5173	-0.0017842	-4.4448	-0.0022547	507.2725060043286	47.832	0.39552	45.122	44.935	45.331	-2.7097					11	7	2	0	0	0	0.027462	1	2928	2928		44.117	18.543	1	18275	+		55915	28899	46168	46208	61071	61071					0.028414737887942465
TAHDQKTAL	9	Unmodified	_TAHDQKTAL_					0	0	0		ENSG00000142875|ENST00000370685|PRKACB	ENSG00000142875|ENST00000370685|PRKACB	ENSG00000142875|ENST00000370685|PRKACB	MULTI-MSMS	OvCa99_classI_Rep5	1	492.7591247558594	2	492.759081	983.503609	-0.69764	-0.00034377	0.57989	0.00028575	-0.11775	-5.8021E-05	492.7592509640965	29.112	0.69851	29.112	28.888	29.586	0					29	13	3	0	0	0	0.1804	1	1008	1008		79.713	20.931	1	600670			55916	4999	46169	46209	61072	61072					0.011196954037473006
TAILVPDYLN	10	Unmodified	_TAILVPDYLN_					0	0	0		tr|A0A553SRV0|A0A553SRV0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01860PE=4SV=1	tr|A0A553SRV0|A0A553SRV0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01860PE=4SV=1	tr|A0A553SRV0|A0A553SRV0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01860PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.8052978515625	2	559.808239	1117.60193	-3.5803	-0.0020043	-2.0856	-0.0011675	-5.6659	-0.0031718	560.3084353956142	154.99	4.0901	153.5	151.7	155.79	-1.4911					148	116	2	0	0	0	0.67931	1	15332	15332		32.812	2.3088	1	18206			55917	34302	46170	46210	61073	61073					0.047828789289496854
TAILVPDYLN	10	Unmodified	_TAILVPDYLN_					0	0	0		tr|A0A553SRV0|A0A553SRV0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01860PE=4SV=1	tr|A0A553SRV0|A0A553SRV0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01860PE=4SV=1	tr|A0A553SRV0|A0A553SRV0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01860PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	559.808239	1117.60193	-3.4906	-0.0019541	-1.7218	-0.00096387	-5.2124	-0.002918	560.3088462426922	154.11	1.2336	153.88	153.46	154.7	-0.22696	0.22296	-0.00031916	NaN	32.812	36	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15140			55918	34302	46170	46210							0.047828789289496854
TAILVPDYLN	10	Unmodified	_TAILVPDYLN_					0	0	0		tr|A0A553SRV0|A0A553SRV0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01860PE=4SV=1	tr|A0A553SRV0|A0A553SRV0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01860PE=4SV=1	tr|A0A553SRV0|A0A553SRV0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01860PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	559.808239	1117.60193	-5.8345	-0.0032662	0.64317	0.00036005	-5.1914	-0.0029062	559.8087219381066	154.61	2.3375	153.6	151.91	154.25	-1.0076	-0.063354	0.0023287	NaN	32.812	62	48	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16298			55919	34302	46170	46210							0.047828789289496854
TAITMPQASPR	11	Unmodified	_TAITMPQASPR_					0	0	0			REV__ENST00000396593.6_2_16:8948778-8948955:-|nuORF	REV__ENST00000396593.6_2_16:8948778-8948955:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	586.8035278320312	2	586.808248	1171.60194	-5.211	-0.0030579	-3.6831	-0.0021613	-8.8941	-0.0052191	586.8058911238584	159.27	2.2635	159.04	158.53	160.79	-0.22696					99	45	3	0	0	0	0.7046	1	16168	16168		28.081	1.3886	1	107570	+		55920	25334	46171	46211	61074	61074					0.023005556573025387
TAIYKAIFIVL	11	Unmodified	_TAIYKAIFIVL_					0	0	0		ENST00000240100.6_1_8:29191910-29192249:-|nuORF	ENST00000240100.6_1_8:29191910-29192249:-|nuORF	ENST00000240100.6_1_8:29191910-29192249:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	626.3917846679688	2	626.389199	1250.76385	-5.6586	-0.0035445	2.2827	0.0014298	-3.3759	-0.0021146	626.8920656002647	163.54	1.1058	163.31	162.97	164.08	-0.22697					56	36	2	0	0	0	0.72459	1	16702	16702		20.947	5.3051	1	65883			55921	9757	46172	46212	61075	61075					0.14849467681892747
TAKFFTELD	9	Unmodified	_TAKFFTELD_					0	0	0		tr|A0A7D7AD73|A0A7D7AD73_9CLOTClassCsortaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22030PE=4SV=1	tr|A0A7D7AD73|A0A7D7AD73_9CLOTClassCsortaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22030PE=4SV=1	tr|A0A7D7AD73|A0A7D7AD73_9CLOTClassCsortaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22030PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.2747802734375	2	536.27149	1070.52843	1.7544	0.00094082	-2.5626	-0.0013743	-0.80827	-0.00043345	536.7723174461125	129.57	0.70094	129.57	129.31	130.01	0					22	14	2	0	0	0	0.027461	1	15000	15000		40.778	5.1599	1	155230			55922	36236	46173	46213	61076	61076					-0.004016695135305781
TAKGDIEISL	10	Unmodified	_TAKGDIEISL_					0	0	0		nc|ENSG00000165288|Q6RI45-2|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;nc|ENSG00000165288|Q6RI45-5|BRWD3;nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;ENST00000473691.1_1_X:79938122-79975072:-|nuORF	nc|ENSG00000165288|Q6RI45-2|BRWD3	nc|ENSG00000165288|Q6RI45-2|BRWD3	MULTI-MSMS	OvCa99_classI_Rep5	1	523.7904663085938	2	523.790047	1045.56554	1.8868	0.00098831	0.38304	0.00020064	2.2699	0.0011889	523.790165205569	84.154	0.84332	84.154	83.629	84.472	0					34	19	2	0	0	0	0.39718	1	8770	8770		68.846	3.043	1	3517100			55923	6548	46174	46214	61077	61077					0.04458002032242803
TAKGDIEISL	10	Unmodified	_TAKGDIEISL_					0	0	0		nc|ENSG00000165288|Q6RI45-2|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;nc|ENSG00000165288|Q6RI45-5|BRWD3;nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;ENST00000473691.1_1_X:79938122-79975072:-|nuORF	nc|ENSG00000165288|Q6RI45-2|BRWD3	nc|ENSG00000165288|Q6RI45-2|BRWD3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	523.790047	1045.56554	-1.0306	-0.00053983	1.1093	0.00058104	0.078676	4.121E-05	523.790387242064	85.713	1.4588	84.223	83.604	85.062	-1.4906	0.10546	0.00025061	NaN	68.846	55	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59841			55924	6548	46174	46214							0.04458002032242803
TAKGDIEISL	10	Unmodified	_TAKGDIEISL_					0	0	0		nc|ENSG00000165288|Q6RI45-2|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;nc|ENSG00000165288|Q6RI45-5|BRWD3;nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;ENST00000473691.1_1_X:79938122-79975072:-|nuORF	nc|ENSG00000165288|Q6RI45-2|BRWD3	nc|ENSG00000165288|Q6RI45-2|BRWD3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	523.790047	1045.56554	-1.3783	-0.00072196	2.2366	0.0011715	0.85829	0.00044956	523.7909140911655	86.178	1.1542	83.958	83.686	84.84	-2.2204	-0.15937	0.0014316	NaN	68.846	55	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148350			55925	6548	46174	46214							0.04458002032242803
TAKGDIEISL	10	Unmodified	_TAKGDIEISL_					0	0	0		nc|ENSG00000165288|Q6RI45-2|BRWD3;ENSG00000165288|ENST00000373275|BRWD3;nc|ENSG00000165288|Q6RI45-5|BRWD3;nc|ENSG00000165288|Q6RI45-3|BRWD3;nc|ENSG00000165288|Q6RI45-4|BRWD3;ENST00000473691.1_1_X:79938122-79975072:-|nuORF	nc|ENSG00000165288|Q6RI45-2|BRWD3	nc|ENSG00000165288|Q6RI45-2|BRWD3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	523.790047	1045.56554	0.23649	0.00012387	-0.70408	-0.00036879	-0.46759	-0.00024492	523.789432938638	86.761	1.4897	84.134	83.463	84.952	-2.6269	0.016741	-0.0016491	NaN	68.846	51	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114760			55926	6548	46174	46214							0.04458002032242803
TAKIIPTFLD	10	Unmodified	_TAKIIPTFLD_					0	0	0			REV__tr|A0A553SKF9|A0A553SKF9_NIACIAlanine--tRNAligaseOS=NialliacirculansOX=1397GN=alaSPE=3SV=1	REV__tr|A0A553SKF9|A0A553SKF9_NIACIAlanine--tRNAligaseOS=NialliacirculansOX=1397GN=alaSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.3104248046875	2	559.826432	1117.63831	0.24365	0.0001364	3.1402	0.001758	3.3838	0.0018944	560.3284905675563	70.954	1.354	67.497	67.155	68.509	-3.4563					35	27	2	0	0	0	0.027028	1	5477	5477		18.262	0	1	68051	+		55927	30120	46175	46215	61078	61078					0.08419755825661923
TALAHILLSL	10	Unmodified	_TALAHILLSL_					0	0	0			REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2	REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.8080444335938	2	526.329142	1050.64373	-0.056087	-2.952E-05	2.5258	0.0013294	2.4697	0.0012999	526.3301797403976	67.41	0.31597	67.41	67.212	67.528	0					10	7	2	0	0	0	0.027088	1	6292	6292		19.997	0	1	153460	+		55928	16309	46176	46216	61079	61079					0.12043479408157509
TALFRHMALL	10	Unmodified	_TALFRHMALL_					0	0	0			REV__nc|ENSG00000148842|Q9H8M5-2|CNNM2	REV__nc|ENSG00000148842|Q9H8M5-2|CNNM2	MULTI-MSMS	OvCa9_classI_Rep2	2	586.8334350585938	2	586.834069	1171.65358	0.72441	0.00042511	1.1783	0.00069148	1.9027	0.0011166	586.8345916755596	91.526	1.7932	90.29	89.742	91.535	-1.2355					89	33	4	0	0	0	0.49558	1	8125	8125		54.776	0.053964	1	594470	+		55929	20132	46177	46217	61080	61080					0.07462344141868016
TALGLDRKP	9	Unmodified	_TALGLDRKP_					0	0	0		CFAP45|p.A173Pfs*22|1|0.11|ENSG00000213085|chr1:159887912-159887912|C/-|frameshift_variant;CFAP45|p.K412Rfs*115|1|0.05|ENSG00000213085|chr1:159876673-159876674|-/TC|frameshift_variant;ENSG00000213085|ENST00000368099|CFAP45	CFAP45|p.A173Pfs*22|1|0.11|ENSG00000213085|chr1:159887912-159887912|C/-|frameshift_variant	CFAP45|p.A173Pfs*22|1|0.11|ENSG00000213085|chr1:159887912-159887912|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	485.7873840332031	2	485.787641	969.56073	0.825	0.00040078	-1.6014	-0.00077795	-0.77641	-0.00037717	485.7867400161408	87.055	2.3197	85.623	84.751	87.071	-1.4311					114	45	4	0	0	0	0.35444	1	7565	7565		56.721	3.6321	1	767590			55930	227	46178	46218	61081	61081					0.07473162680139467
TALGWALLFL	10	Unmodified	_TALGWALLFL_					0	0	0		chr16:3015181-3015286|195|45.35|0.01|12.45|-|0|CLDN6,None|1	chr16:3015181-3015286|195|45.35|0.01|12.45|-|0|CLDN6,None|1	chr16:3015181-3015286|195|45.35|0.01|12.45|-|0|CLDN6,None|1	MULTI-SECPEP	OvCa9_classI_Rep3	3	552.27783203125	2	552.826235	1103.63792	0.0016183	8.9464E-07	-2.5005	-0.0013823	-2.4989	-0.0013814	552.824054516855	113.94	1.2212	112.88	112.53	113.75	-1.055					57	23	4	0	0	0	0.026982	1	8462	8462		23.042	0	1	93511			55931	376	46179	46219	61082	61082					0.09024380896471484
TALKSIIAL	9	Unmodified	_TALKSIIAL_					0	0	0		ENSG00000186919|ENST00000334586|ZACN	ENSG00000186919|ENST00000334586|ZACN	ENSG00000186919|ENST00000334586|ZACN	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.76385498046875	2	465.305136	928.595718	0.20195	9.3967E-05	-0.35636	-0.00016582	-0.15442	-7.1851E-05	465.3047977131197	66.536	0.84373	63.841	63.666	64.51	-2.6958					25	16	2	0	0	0	0.027426	1	5202	5202		39.253	15.05	1	30518			55932	8375	46180	46220	61083	61083					0.12856405488071232
TALKSIIAL	9	Unmodified	_TALKSIIAL_					0	0	0		ENSG00000186919|ENST00000334586|ZACN	ENSG00000186919|ENST00000334586|ZACN	ENSG00000186919|ENST00000334586|ZACN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.7658386230469	2	465.305136	928.595718	1.0897	0.00050704	-1.8004	-0.00083773	-0.71071	-0.0003307	465.30420379399027	67.453	0.981	63.963	63.739	64.72	-3.4902					24	19	2	0	0	0	0.027461	1	5009	5009		49.442	12.282	1	31183			55933	8375	46180	46220	61084	61084					0.12856405488071232
TALLCAGLLL	10	Unmodified	_TALLCAGLLL_					0	0	0		ENSG00000187553|ENST00000651965|CYP26C1	ENSG00000187553|ENST00000651965|CYP26C1	ENSG00000187553|ENST00000651965|CYP26C1	MULTI-MSMS	OvCa9_classI_Rep2	2	494.296875	2	494.298996	986.583439	0.59231	0.00029278	-4.0911	-0.0020222	-3.4988	-0.0017295	494.29678378725345	123.89	1.2329	123.66	123.34	124.57	-0.23193					56	24	3	0	0	0	0.67931	1	12036	12036		32.812	0	1	136770			55934	8411	46181	46221	61085	61085					0.08961045753392227
TALLFMLRSHS	11	Oxidation (M)	_TALLFM(Oxidation (M))LRSHS_		TALLFM(1)LRSHS		TALLFM(58)LRSHS	0	0	1		OR4D5|p.V223F|1|0.09|ENSG00000171014|chr11:123940283-123940283|G/T|missense_variant	OR4D5|p.V223F|1|0.09|ENSG00000171014|chr11:123940283-123940283|G/T|missense_variant	OR4D5|p.V223F|1|0.09|ENSG00000171014|chr11:123940283-123940283|G/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	646.3475341796875	2	646.344997	1290.67544	-1.2412	-0.00080222	4.331	0.0027993	3.0899	0.0019971	646.3477237536227	39.942	1.5339	37.233	37.002	38.536	-2.7097					82	30	4	0	0	0	0.43993	1	1975	1975		58.23	15.366	1	358920			55935	15457	46182	46222	61086	61086		380			0.04173104099777447
TALNRVVAE	9	Unmodified	_TALNRVVAE_					0	0	0			REV__ENSG00000145390|ENST00000692078|USP53	REV__ENSG00000145390|ENST00000692078|USP53	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.77960205078125	2	486.777274	971.539994	1.0534	0.00051276	-1.1345	-0.00055226	-0.081161	-3.9507E-05	486.7766691685014	68.041	2.1585	64.55	63.938	66.096	-3.4902					78	43	2	0	0	0	0.16562	1	5024	5024		82.241	7.9855	1	1356400	+		55936	19963	46183	46223	61087	61087					0.053085723004642205
TALRKSIIEYI	11	Unmodified	_TALRKSIIEYI_					0	0	0			REV__ENSG00000104237|ENST00000220676|RP1	REV__ENSG00000104237|ENST00000220676|RP1	MULTI-MSMS	OvCa9_classI_Rep3	3	436.2608947753906	3	436.262489	1305.76564	1.694	0.00073904	-4.1194	-0.0017972	-2.4254	-0.0010581	436.26077678089143	64.483	2.8395	61.49	61.14	63.98	-2.9933					174	55	5	0	0	0	0.66495	1	2561	2561		38.754	7.1193	1	3808000	+		55937	17654	46184	46224	61088	61088					0.12498476699875027
TALRPLPSL	9	Unmodified	_TALRPLPSL_					0	0	0		CPT2|p.F370Lfs*50|1|0.12|ENSG00000157184|chr1:53210781-53210781|C/-|frameshift_variant	CPT2|p.F370Lfs*50|1|0.12|ENSG00000157184|chr1:53210781-53210781|C/-|frameshift_variant	CPT2|p.F370Lfs*50|1|0.12|ENSG00000157184|chr1:53210781-53210781|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	484.2691345214844	2	484.300384	966.586216	-0.93794	-0.00045425	0.38359	0.00018577	-0.55435	-0.00026847	484.3003084711862	49.076	0.44444	46.316	46.127	46.572	-2.7603					10	8	2	0	0	0	0.027447	1	3115	3115		47.657	8.8512	1	10044			55938	677	46185	46225	61089	61089					0.10158637202562204
TALSLANVTY	10	Unmodified	_TALSLANVTY_					0	0	0		ENSG00000282608|ENST00000241356|ADORA3;ENSG00000121933|ENST00000369716|TMIGD3	ENSG00000282608|ENST00000241356|ADORA3	ENSG00000282608|ENST00000241356|ADORA3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.7630004882812	2	526.784764	1051.55498	-0.70836	-0.00037315	-2.8806	-0.0015175	-3.589	-0.0018906	526.7835336575333	121.89	1.3176	120.54	120.21	121.52	-1.3479					33	25	2	0	0	0	0.026826	1	11533	11533		52.937	12.159	1	21628			55939	9605	46186	46226	61090	61090					0.031260193778280154
TALSSSLLII	10	Unmodified	_TALSSSLLII_					0	0	0		ENST00000339514.8_1_2:192234998-192248009:+|nuORF;ENST00000496992.1_1_2:192242611-192248009:+|nuORF	ENST00000339514.8_1_2:192234998-192248009:+|nuORF	ENST00000339514.8_1_2:192234998-192248009:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	509.31201171875	2	509.313158	1016.61176	-0.72994	-0.00037177	-2.0393	-0.0010387	-2.7693	-0.0014104	509.31199201939705	28.415	0.2981	28.415	28.29	28.588	0					13	5	3	0	0	0	0.73378	1	930	930		26.693	4.733	1	161750			55940	10551	46187	46227	61091	61091					0.1041206693435015
TANLTRSI	8	Unmodified	_TANLTRSI_					0	0	0			REV__chr12:49330573-49330661|408|16.96|0.49|5.11|+|ENST00000547923|TROAP,TROAP	REV__chr12:49330573-49330661|408|16.96|0.49|5.11|+|ENST00000547923|TROAP,TROAP	MULTI-MSMS	OvCa9_classI_Rep4_	4	438.25091552734375	2	438.250892	874.48723	-0.59791	-0.00026204	0.25648	0.0001124	-0.34143	-0.00014963	438.2509557447157	40.557	1.9268	37.603	37.315	39.242	-2.9541					110	36	5	0	0	0	0.59148	1	1766	1766		65.803	0	1	1459300	+		55941	15878	46188	46228	61092	61092					0.04496614237655194
TANVTLLRTG	10	Unmodified	_TANVTLLRTG_					0	0	0			REV__nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3	REV__nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3037109375	2	523.303655	1044.59276	-0.69596	-0.0003642	0.54848	0.00028702	-0.14748	-7.7179E-05	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.72142	1	13841	13841		28.081	1.2854	1	130240	+		55942	23515	46189	46229	61093	61093					0.07224530363282611
TAPGKIEKVKP	11	Unmodified	_TAPGKIEKVKP_					0	0	0		nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-7|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-6|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5|PALM2AKAP2;nc|ENSG00000157654|Q9Y2D5-3|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2	nc|ENSG00000157654|Q9Y2D5-5|PALM2AKAP2	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3554077148438	2	584.358431	1166.70231	-2.312	-0.0013511	-1.149	-0.00067141	-3.461	-0.0020225	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.69455	1	14597	14597		31.53	0	1	180810			55943	15118	46190	46230	61094	61094					0.1256253598260173
TAPLVGHL	8	Unmodified	_TAPLVGHL_					0	0	0		ENST00000476245.5_1_3:125869637-125874346:-|nuORF	ENST00000476245.5_1_3:125869637-125874346:-|nuORF	ENST00000476245.5_1_3:125869637-125874346:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.22833251953125	2	404.239796	806.465038	1.4677	0.00059329	-2.2169	-0.00089616	-0.74922	-0.00030286	404.2386231744463	62.653	0.44162	62.653	62.335	62.777	0					15	10	2	0	0	0	0.028476	1	5573	5573		74.517	0	1	171450			55944	12464	46191	46231	61095	61095					0.05406434559904483
TAPWAELHL	9	Unmodified	_TAPWAELHL_					0	0	0			REV__ENSG00000099721|ENST00000651267|AMELY	REV__ENSG00000099721|ENST00000651267|AMELY	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.835693359375	2	519.274367	1036.53418	-0.81812	-0.00042483	0.28142	0.00014613	-0.5367	-0.0002787	519.2744607893331	55.956	0.65825	55.956	55.682	56.34	0					27	15	3	0	0	0	0.027417	1	4588	4588		76.847	11.043	1	1325200	+		55945	17330	46192	46232	61096	61096					0.017374737888076197
TAQFTVPK	8	Unmodified	_TAQFTVPK_					0	0	0			REV__nc|ENSG00000158636|Q7Z589-2|EMSY	REV__nc|ENSG00000158636|Q7Z589-2|EMSY	MULTI-SECPEP	OvCa99_classI_Rep5	1	446.2620544433594	2	446.25036	890.486168	-0.06536	-2.9167E-05	-4.1923	-0.0018708	-4.2576	-0.0019	446.2484030646642	37.321	0.46187	37.321	37.159	37.621	0					15	9	2	0	0	0	0.028476	1	2063	2063		10.866	0	1	246430	+		55946	20576	46193	46233	61097	61097					0.03654399868753444
TAQVLPGILQK	11	Unmodified	_TAQVLPGILQK_					0	0	0		nc|ENSG00000198010|Q9P1A6-2|DLGAP2;nc|ENSG00000198010|Q9P1A6|DLGAP2;ENST00000522092.5_2_8:772178-1087480:+|nuORF	nc|ENSG00000198010|Q9P1A6-2|DLGAP2;ENST00000522092.5_2_8:772178-1087480:+|nuORF	ENST00000522092.5_2_8:772178-1087480:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3556518554688	2	584.358431	1166.70231	-1.7162	-0.0010029	-1.68	-0.00098173	-3.3962	-0.0019846	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.71789	1	14566	14566		23.523	4.4192	1	833330			55947	15254;13134	46194	46234	61098	61098					0.1256253598260173
TARAGPRKR	9	Unmodified	_TARAGPRKR_					0	0	0		RCC2|p.S157Yfs*43|1|0.08|ENSG00000179051|chr1:17425594-17425595|-/TGGCAGCAACAGAGGTCTCATGTCAT|frameshift_variant;ENSG00000179051|ENST00000375436|RCC2	RCC2|p.S157Yfs*43|1|0.08|ENSG00000179051|chr1:17425594-17425595|-/TGGCAGCAACAGAGGTCTCATGTCAT|frameshift_variant	RCC2|p.S157Yfs*43|1|0.08|ENSG00000179051|chr1:17425594-17425595|-/TGGCAGCAACAGAGGTCTCATGTCAT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.82061767578125	2	506.809774	1011.60499	-0.74179	-0.00037594	2.2488	0.0011397	1.507	0.00076376	506.8111339962117	104.33	1.5463	102.21	101.8	103.34	-2.1192					37	29	2	0	0	0	0.027462	1	9425	9425		31.53	8.4873	1	14592			55948	7798	46195	46235	61099	61099					0.0996561161698537
TARQPLPILPV	11	Unmodified	_TARQPLPILPV_					0	0	0		ENST00000537670.5_1_15:66855926-66858216:-|nuORF	ENST00000537670.5_1_15:66855926-66858216:-|nuORF	ENST00000537670.5_1_15:66855926-66858216:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	602.8736572265625	2	602.874248	1203.73394	0.39799	0.00023994	-0.97219	-0.00058611	-0.57421	-0.00034617	602.8736249948932	105.04	1.9216	103.03	102.69	104.61	-2.0161					116	37	5	0	0	0	0.68021	1	9531	9531		36.447	0	1	1590400			55949	13409	46196	46236	61100	61100					0.140225287365638
TASETSELEL	10	Unmodified	_TASETSELEL_					0	0	0		ENST00000408914.2_1_21:37422526-37423618:+|nuORF	ENST00000408914.2_1_21:37422526-37423618:+|nuORF	ENST00000408914.2_1_21:37422526-37423618:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	540.26123046875	2	540.258776	1078.503	1.913	0.0010335	0.66	0.00035657	2.573	0.0013901	540.2590380736041	128.92	1.4011	128.92	128.56	129.96	0					55	29	3	0	0	0	0.12182	1	14935	14935		108.09	25.847	1	825350			55950	11506	46197	46237	61101	61101					-0.033111888266148526
TASISLRPQ	9	Unmodified	_TASISLRPQ_					0	0	0		ENST00000539448.5_1_2:173940183-173940294:+|nuORF	ENST00000539448.5_1_2:173940183-173940294:+|nuORF	ENST00000539448.5_1_2:173940183-173940294:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.7792053222656	2	486.777274	971.539994	1.0534	0.00051276	-1.1345	-0.00055226	-0.081161	-3.9507E-05	486.7766691685014	68.041	2.1585	64.55	63.938	66.096	-3.4902					78	43	2	0	0	0	0.2422	1	5036	5036		69.628	11.816	1	1356400			55951	13438	46198	46238	61102	61102					0.05308572300475589
TASKSLLFY	9	Unmodified	_TASKSLLFY_					0	0	0			REV__ENST00000472714.1_1_7:107564398-107569844:-|nuORF	REV__ENST00000472714.1_1_7:107564398-107569844:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	515.281005859375	2	515.2844	1028.55425	0.85124	0.00043863	-1.6578	-0.00085423	-0.80655	-0.0004156	515.2837199382453	104.32	1.6643	102.88	102.5	104.16	-1.4347					77	31	3	0	0	0	0.40667	1	7262	7262		51.335	1.7994	1	555220	+		55952	26318	46199	46239	61103	61103					0.041112247287628634
TASLKRQPKK	10	Unmodified	_TASLKRQPKK_					0	0	0		ENSG00000221843|ENST00000447166|C2orf16;nc|ENSG00000221843|Q68DN1|SPATA31H1	ENSG00000221843|ENST00000447166|C2orf16	ENSG00000221843|ENST00000447166|C2orf16	MULTI-SECPEP	OvCa9_classI_Rep2	2	579.3226928710938	2	578.861672	1155.70879	-1.5443	-0.00089391	1.4733	0.00085281	-0.071008	-4.1104E-05	578.8626258332835	49.954	0.5965	47.16	46.884	47.48	-2.794					17	11	2	0	0	0	0.026931	1	3213	3213		37.812	2.1932	1	9191.8			55953	9229	46200	46240	61104	61104					0.13716473933959605
TASPFPQR	8	Unmodified	_TASPFPQR_					0	0	0		ENST00000481677.1_1_1:160808287-160808924:-|nuORF	ENST00000481677.1_1_1:160808287-160808924:-|nuORF	ENST00000481677.1_1_1:160808287-160808924:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	452.2538757324219	2	452.237784	902.461016	0.93313	0.000422	0.45283	0.00020478	1.386	0.00062678	452.23727912808096	33.667	0.29567	30.958	30.873	31.168	-2.7097					6	5	2	0	0	0	0.028476	1	1215	1215		30.504	1.3541	1	9171.3			55954	12550	46201	46241	61105	61105					0.005883450661940515
TASVHVLL	8	Unmodified	_TASVHVLL_					0	0	0			REV__ENST00000233336.6_1_2:113288741-113288918:+|nuORF	REV__ENST00000233336.6_1_2:113288741-113288918:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	420.2530212402344	2	420.252903	838.491253	0.28048	0.00011787	0.0022746	9.559E-07	0.28276	0.00011883	420.25282934845166	110.01	2.9881	108.41	108.07	111.06	-1.6011					122	56	5	0	0	0	0.64377	1	10107	10107		54.765	2.4655	1	621620	+		55955	23796	46202	46242	61106	61106					0.06554703731376321
TASVNKSIME	10	Unmodified	_TASVNKSIME_					0	0	0		ENST00000238714.7_1_2:60983626-60987372:+|nuORF	ENST00000238714.7_1_2:60983626-60987372:+|nuORF	ENST00000238714.7_1_2:60983626-60987372:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.2724609375	2	540.273706	1078.53286	-0.46191	-0.00024956	-2.6697	-0.0014424	-3.1316	-0.0016919	540.2722987651365	90.268	1.681	87.693	87.248	88.929	-2.575					92	32	4	0	0	0	0.48398	1	7791	7791		56.434	1.5392	1	589130			55956	9751	46203	46243	61107	61107					-0.0032652836225679494
TATGPDTRPP	10	Unmodified	_TATGPDTRPP_					0	0	0			REV__ENST00000420411.7_1_X:1520988-1531905:+|nuORF	REV__ENST00000420411.7_1_X:1520988-1531905:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.7571716308594	2	506.756538	1011.49852	-4.7116	-0.0023876	3.5333	0.0017905	-1.1783	-0.00059711	506.7587319957026	154.71	0.44119	153.26	153.1	153.54	-1.4516					20	9	3	0	0	0	0.72319	1	15319	15319		27.882	3.6795	1	14383	+		55957	25591	46204	46244	61108	61108					-0.006766084588662125
TATGPDTRPP	10	Unmodified	_TATGPDTRPP_					0	0	0			REV__ENST00000420411.7_1_X:1520988-1531905:+|nuORF	REV__ENST00000420411.7_1_X:1520988-1531905:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	506.756538	1011.49852	-5.9524	-0.0030164	5.3531	0.0027127	-0.59932	-0.00030371	506.7593181898721	154.22	0.69847	153.21	152.87	153.57	-1.0076	-0.021028	0.0010876	NaN	27.882	15	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7338.5	+		55958	25591	46204	46244							-0.006766084588662125
TATGPDTRPP	10	Unmodified	_TATGPDTRPP_					0	0	0			REV__ENST00000420411.7_1_X:1520988-1531905:+|nuORF	REV__ENST00000420411.7_1_X:1520988-1531905:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	506.756538	1011.49852	-4.7116	-0.0023876	3.5333	0.0017905	-1.1783	-0.00059711	506.7587319957026	154.71	0.44119	153.26	153.1	153.54	-1.4516	0.021028	-0.00075678	NaN	27.882	20	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14383	+		55959	25591	46204	46244							-0.006766084588662125
TATLEVLNV	9	Unmodified	_TATLEVLNV_					0	0	0		tr|A0A553SMN0|A0A553SMN0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_22910PE=4SV=1	tr|A0A553SMN0|A0A553SMN0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_22910PE=4SV=1	tr|A0A553SMN0|A0A553SMN0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_22910PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.782958984375	2	480.274032	958.533512	-0.12562	-6.0332E-05	0.6031	0.00028965	0.47748	0.00022932	480.27420213556513	83.173	1.0723	80.49	80.319	81.392	-2.6829					41	21	2	0	0	0	0.027433	1	6895	6895		54.776	0	1	401730			55960	33852	46205	46245	61109	61109					0.05258634349092972
TATLKKLA	8	Unmodified	_TATLKKLA_					0	0	0			REV__nc|ENSG00000151812|A4IF30-2|SLC35F4	REV__nc|ENSG00000151812|A4IF30-2|SLC35F4	MULTI-MSMS	OvCa9_classI_Rep3	3	423.27520751953125	2	423.276378	844.538203	-1.5369	-0.00065052	-1.6206	-0.00068596	-3.1575	-0.0013365	423.27558847705467	140.82	1.576	139.79	139.38	140.96	-1.0339					74	31	4	0	0	0	0.74209	2	11629	11595;11629		19.36	4.7279	1	296010	+		55961	20256	46206	46246	61110;61111	61111					0.10971563282510033
TATLKKLA	8	Unmodified	_TATLKKLA_					0	0	0			REV__nc|ENSG00000151812|A4IF30-2|SLC35F4	REV__nc|ENSG00000151812|A4IF30-2|SLC35F4	MULTI-MSMS	OvCa9_classI_Rep4_	4	423.275634765625	2	423.276378	844.538203	0.49298	0.00020867	-3.7053	-0.0015684	-3.2124	-0.0013597	423.27473332954634	141.2	1.9317	139.74	139.4	141.33	-1.4627					94	36	4	0	0	0	0.75661	1	13772	13772		19.36	0	1	1644700	+		55962	20256	46206	46246	61112	61112					0.10971563282510033
TATLKKLAL	9	Unmodified	_TATLKKLAL_					0	0	0			REV__nc|ENSG00000151812|A4IF30-2|SLC35F4	REV__nc|ENSG00000151812|A4IF30-2|SLC35F4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.7879638671875	2	479.81841	957.622267	0.06069	2.912E-05	-0.66001	-0.00031668	-0.59932	-0.00028756	479.8179585548452	78.166	0.62595	75.35	75.116	75.742	-2.8165					21	12	2	0	0	0	0.027462	1	6331	6331		31.955	9.995	1	40420	+		55963	20256	46207	46247	61113	61113					0.14176094379399728
TATMHILVV	9	Unmodified	_TATMHILVV_					0	0	0		ENSG00000164880|ENST00000404767|INTS1;ENST00000468115.1_1_7:1523234-1533501:-|nuORF	ENSG00000164880|ENST00000404767|INTS1	ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.7820129394531	2	492.78097	983.547388	-0.083756	-4.1273E-05	-0.79446	-0.0003915	-0.87822	-0.00043277	492.7807351325624	103.21	1.5172	101.01	100.41	101.93	-2.1994					81	28	5	0	0	0	0.27546	1	9310	9310		65.803	0	1	293370			55964	6494	46208	46248	61114	61114					0.05495588576548016
TATPDGRL	8	Unmodified	_TATPDGRL_					0	0	0		ENST00000547407.5_1_16:706280-710806:+|nuORF;ENST00000546516.5_1_16:705169-713132:+|nuORF;ENSG00000161996|ENST00000293879|WDR90	ENST00000547407.5_1_16:706280-710806:+|nuORF	ENST00000547407.5_1_16:706280-710806:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	415.7215270996094	2	415.721967	829.429381	-1.0163	-0.00042249	0.92585	0.0003849	-0.090424	-3.7591E-05	415.72221629127785	119.3	1.3301	119.13	118.81	120.14	-0.17138					54	26	3	0	0	0	0.75241	1	11488	11488		25.45	0	1	206540			55965	6149	46209	46249	61115	61115					0.007843523122460283
TATRARPTCTA	11	Unmodified	_TATRARPTCTA_					0	0	0			REV__chr8:144266667-144268104|145|11.19|0.03|8.66|+|1|None,SCX|1	REV__chr8:144266667-144268104|145|11.19|0.03|8.66|+|1|None,SCX|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.8148803710938	2	574.795672	1147.57679	-0.39067	-0.00022456	-2.9708	-0.0017076	-3.3615	-0.0019322	575.2959758764254	42.992	0.17414	42.992	42.883	43.057	0					5	3	2	0	0	0	0.025594	1	2806	2806		41.427	14.734	1	68771	+		55966	16111	46210	46250	61116	61116					0.00890500854734455
TATRDISLD	9	Unmodified	_TATRDISLD_					0	0	0		TRIP11|p.N1845Tfs*4|1|0.37|ENSG00000100815|chr14:91974669-91974669|G/-|frameshift_variant;nc|ENSG00000100815|Q15643-2|TRIP11;ENSG00000100815|ENST00000267622|TRIP11	TRIP11|p.N1845Tfs*4|1|0.37|ENSG00000100815|chr14:91974669-91974669|G/-|frameshift_variant	TRIP11|p.N1845Tfs*4|1|0.37|ENSG00000100815|chr14:91974669-91974669|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.298583984375	2	496.256371	990.498189	0.63011	0.00031269	-3.0643	-0.0015207	-2.4342	-0.001208	496.25456938168196	89.793	0.90284	87.218	86.95	87.853	-2.575					40	17	4	0	0	0	0.027411	1	7706	7706		54.776	0	1	115900			55967	2108	46211	46251	61117	61117					0.0025597182128649365
TATSTPLKLVF	11	Unmodified	_TATSTPLKLVF_					0	0	0			REV__nc|ENSG00000062038|P22223-2|CDH3	REV__nc|ENSG00000062038|P22223-2|CDH3	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3417358398438	2	589.344989	1176.67542	-5.1334	-0.0030254	1.6192	0.00095427	-3.5142	-0.0020711	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.71498	1	12600	12600		24.519	0	1	589610	+		55968	16749	46212	46252	61118	61118					0.09415427371413898
TAVALLRLL	9	Unmodified	_TAVALLRLL_					0	0	0		ENSG00000110917|ENST00000228506|MLEC	ENSG00000110917|ENST00000228506|MLEC	ENSG00000110917|ENST00000228506|MLEC	MULTI-MSMS	OvCa99_classI_Rep5	1	485.3277282714844	2	485.326402	968.638252	1.8014	0.00087427	-0.26926	-0.00013068	1.5321	0.00074359	485.326458571627	133.67	1.2123	133.67	133.17	134.38	0					63	25	3	0	0	0	0.064985	1	15544	15544		110.12	19.75	1	335120			55969	2803	46213	46253	61119	61119					0.15267800616322802
TAVCRSSQL	9	Unmodified	_TAVCRSSQL_					0	0	0			REV__ENST00000421097.6_2_17:40715139-40715316:+|nuORF	REV__ENST00000421097.6_2_17:40715139-40715316:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.7450866699219	2	482.747659	963.480765	-0.84091	-0.00040594	-3.2633	-0.0015753	-4.1042	-0.0019813	482.7460637342253	51.071	1.2068	47.898	47.62	48.826	-3.1734					41	23	2	0	0	0	0.5811	1	2987	2987		34.173	1.3601	1	231170	+		55970	25599	46214	46254	61120	61120					-0.002436469853478229
TAVCRSSQL	9	Unmodified	_TAVCRSSQL_					0	0	0			REV__ENST00000421097.6_2_17:40715139-40715316:+|nuORF	REV__ENST00000421097.6_2_17:40715139-40715316:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	482.747659	963.480765	-1.4441	-0.00069712	-2.3966	-0.0011569	-3.8406	-0.001854	482.746444741224	51.041	0.89203	48.247	47.926	48.818	-2.794	0.17481	0.00068307	NaN	34.173	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42021	+		55971	25599	46214	46254							-0.002436469853478229
TAVCRSSQL	9	Unmodified	_TAVCRSSQL_					0	0	0			REV__ENST00000421097.6_2_17:40715139-40715316:+|nuORF	REV__ENST00000421097.6_2_17:40715139-40715316:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	482.747659	963.480765	-0.84091	-0.00040594	-3.2633	-0.0015753	-4.1042	-0.0019813	482.7460637342253	51.071	1.2068	47.898	47.62	48.826	-3.1734	-0.17481	-0.00015376	NaN	34.173	41	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231170	+		55972	25599	46214	46254							-0.002436469853478229
TAVCTQVRR	9	Unmodified	_TAVCTQVRR_					0	0	0		EXOC4-TRUB2|1|fusion;nc|ENSG00000167112|O95900-2|TRUB2;ENSG00000167112|ENST00000372890|TRUB2	EXOC4-TRUB2|1|fusion	EXOC4-TRUB2|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.3262939453125	2	517.2822	1032.54985	0.025253	1.3063E-05	-1.4085	-0.00072857	-1.3832	-0.00071551	517.2810641363019	112.03	0.73496	110.52	110.26	111	-1.5111					18	13	2	0	0	0	0.027462	1	10319	10319		26.693	0	1	24161			55973	14316	46215	46255	61121	61121					0.03487437034209506
TAVEAGRAL	9	Unmodified	_TAVEAGRAL_					0	0	0		nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	MSMS	OvCa99_classI_Rep5	1	444.2524719238281	2	444.250892	886.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.202	1	52.202	51.702	52.702	0								0	0	0	0.025959	1	4078	4078		104.06	13.28	1				55974	1070	46216	46256	61122	61122					0.03944614237661881
TAVEAGRAL	9	Unmodified	_TAVEAGRAL_					0	0	0		nc|ENSG00000032444|Q8IY17-5|PNPLA6;nc|ENSG00000032444|Q8IY17-2|PNPLA6;ENSG00000032444|ENST00000600737|PNPLA6;nc|ENSG00000032444|Q8IY17-3|PNPLA6;nc|ENSG00000032444|Q8IY17|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	nc|ENSG00000032444|Q8IY17-5|PNPLA6	MSMS	OvCa99_classI_Rep5	1	444.2523193359375	2	444.250892	886.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	52.398	1	52.398	51.898	52.898	0								0	0	0	0.07114	1	4105	4105		75.043	1.0686	1				55975	1070	46216	46256	61123	61123					0.03944614237661881
TAVGHALVL	9	Unmodified	_TAVGHALVL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	440.7671203613281	2	440.766178	879.517802	3.1287	0.001379	-1.2674	-0.00055862	1.8613	0.00082041	440.76559966960843	81.948	3.3093	81.948	81.613	84.923	0					178	78	5	0	0	0	0.085069	4	8442	8442;8470;8530;8561		101.21	37.905	1	37297000			55976	6293	46217	46257	61124;61125;61126;61127	61124					0.07322392622711504
TAVGHALVL	9	Unmodified	_TAVGHALVL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	440.766178	879.517802	0.4881	0.00021514	0.43528	0.00019186	0.92338	0.000407	440.7660984163323	84.306	0.59833	81.643	81.363	81.961	-2.6629	-0.15288	0.0014238	NaN	101.21	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13871			55977	6293	46217	46257							0.07322392622711504
TAVINPVK	8	Unmodified	_TAVINPVK_					0	0	0		tr|A0A553SJP3|A0A553SJP3_NIACILrp/AsnCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_16985PE=4SV=1	tr|A0A553SJP3|A0A553SJP3_NIACILrp/AsnCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_16985PE=4SV=1	tr|A0A553SJP3|A0A553SJP3_NIACILrp/AsnCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_16985PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	421.25927734375	2	421.260728	840.506903	-0.16203	-6.8257E-05	-2.9992	-0.0012634	-3.1612	-0.0013317	421.2593246005652	135.39	1.3287	134.28	133.92	135.24	-1.1076					52	26	3	0	0	0	0.75241	1	10944	10944		25.45	1.2474	1	253370			55978	33525	46218	46258	61128	61128					0.0802699024843605
TAVNPKSTL	9	Unmodified	_TAVNPKSTL_					0	0	0		ENSG00000204131|ENST00000633930|NHSL2	ENSG00000204131|ENST00000633930|NHSL2	ENSG00000204131|ENST00000633930|NHSL2	MULTI-MSMS	OvCa99_classI_Rep5	1	465.7679138183594	2	465.766374	929.518196	-0.03473	-1.6176E-05	0.28877	0.0001345	0.25404	0.00011832	465.7663690320138	51.232	0.75886	51.232	50.949	51.708	0					32	17	3	0	0	0	0.17606	1	3932	3932		80.455	5.4113	1	1108400			55979	8950	46219	46259	61129	61129					0.05061767551910634
TAVPSLEADA	10	Unmodified	_TAVPSLEADA_					0	0	0			REV__ENSG00000176387|ENST00000326152|HSD11B2	REV__ENSG00000176387|ENST00000326152|HSD11B2	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.2638854980469	2	487.245472	972.476391	-0.51846	-0.00025262	2.1579	0.0010514	1.6395	0.00079883	487.2464688007668	48.196	0.4489	45.487	45.331	45.779	-2.7097					12	8	2	0	0	0	0.026915	1	3006	3006		35.618	0	1	14885	+		55980	21948	46220	46260	61130	61130					-0.010948329272764568
TAVTVNQSL	9	Unmodified	_TAVTVNQSL_					0	0	0		ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000550170.5_1_12:53294858-53298765:-|nuORF;ENST00000425226.1_1_2:203706028-203706388:-|nuORF	ENSG00000170421|ENST00000692008|KRT8	ENSG00000170421|ENST00000692008|KRT8	MULTI-MSMS	OvCa99_classI_Rep5	1	466.75762939453125	2	466.756007	931.497461	1.4142	0.00066006	0.95792	0.00044711	2.3721	0.0011072	466.7563424237149	79.015	0.7236	79.015	78.75	79.474	0					46	17	4	0	0	0	0.0078313	2	8026	8026;8058		180.87	40.899	1	6376000		+	55981	622	46221	46261	61131;61132	61131					0.028971771722467565
TAVVKIPGT	9	Unmodified	_TAVVKIPGT_					0	0	0		nc|ENSG00000120656|Q16514-2|TAF12;ENSG00000120656|ENST00000373824|TAF12	nc|ENSG00000120656|Q16514-2|TAF12	nc|ENSG00000120656|Q16514-2|TAF12	MULTI-MSMS	OvCa9_classI_Rep4_	4	443.2738342285156	2	443.273835	884.533118	1.1525	0.00051086	-4.3689	-0.0019366	-3.2165	-0.0014258	443.27180064343105	139.52	2.0991	138.02	137.22	139.32	-1.4952					91	40	3	0	0	0	0.68424	1	13595	13595		21.96	0.25755	1	858700			55982	3438	46222	46262	61133	61133					0.08623259419914575
TAVYKVAKYA	10	Unmodified	_TAVYKVAKYA_					0	0	0		ENST00000407347.2_1_6:18367150-18368330:-|nuORF	ENST00000407347.2_1_6:18367150-18368330:-|nuORF	ENST00000407347.2_1_6:18367150-18368330:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	557.3178100585938	2	557.318774	1112.623	-1.9914	-0.0011099	-0.89828	-0.00050063	-2.8897	-0.0016105	557.3181775816473	36.131	1.4315	33.421	33.152	34.583	-2.7097					66	28	4	0	0	0	0.64697	1	1521	1521		36.447	2.2742	1	384370			55983	11492	46223	46263	61134	61134					0.07118889028470221
TAWPAVVLL	9	Unmodified	_TAWPAVVLL_					0	0	0		nc|ENSG00000257588|A0A7L8Y648|AQP5-AS1	nc|ENSG00000257588|A0A7L8Y648|AQP5-AS1	nc|ENSG00000257588|A0A7L8Y648|AQP5-AS1	MULTI-SECPEP	OvCa9_classI_Rep3	3	484.7981262207031	2	485.292028	968.569503	-0.80753	-0.00039189	-2.3594	-0.001145	-3.1669	-0.0015369	485.2906346982648	97.965	1.1847	96.205	96.011	97.195	-1.7595					39	22	2	0	0	0	0.027462	1	6499	6499		17.365	0	1	346540			55984	15357	46224	46264	61135	61135					0.08396136316616776
TCALNLMIIT	10	Unmodified	_TCALNLMIIT_					0	0	0			REV__ENSG00000165621|ENST00000541038|OXGR1	REV__ENSG00000165621|ENST00000541038|OXGR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.2913208007812	2	546.79322	1091.57189	1.4187	0.00077574	1.8605	0.0010173	3.2792	0.001793	546.794098643581	107.15	0.34152	107.15	106.89	107.23	0					18	7	3	0	0	0	0.026994	1	12061	12061		19.104	0	1	2343000	+		55985	15903	46225	46265	61136	61136					0.029764806677349043
TCAPRKMPK	9	Unmodified	_TCAPRKMPK_					0	0	0		ENSG00000188817|ENST00000343837|SNTN	ENSG00000188817|ENST00000343837|SNTN	ENSG00000188817|ENST00000343837|SNTN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.8121948242188	2	516.278072	1030.54159	-0.17208	-8.8844E-05	-2.1139	-0.0010913	-2.2859	-0.0011802	516.2765180268015	57.45	0.91724	54.105	53.527	54.444	-3.3449					25	17	3	0	0	0	0.027462	1	3674	3674		15.642	0	1	90943			55986	8506	46226	46266	61137	61137					0.02754166793215518
TCCVAVSHPS	10	Unmodified	_TCCVAVSHPS_					0	0	0		ENST00000494593.1_1_11:67352445-67353745:+|nuORF	ENST00000494593.1_1_11:67352445-67353745:+|nuORF	ENST00000494593.1_1_11:67352445-67353745:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.7890319824219	2	502.22042	1002.42629	-0.70181	-0.00035246	0.33939	0.00017045	-0.36242	-0.00018202	502.2207451049299	56.254	0.35165	52.959	52.769	53.12	-3.2944					10	6	2	0	0	0	0.026915	1	3568	3568		27.882	9.5578	1	15470			55987	12757	46227	46267	61138	61138					-0.07482982128431104
TCDDPEEEL	9	Unmodified	_TCDDPEEEL_					0	0	0		SETX|p.K2621T|1|0.06|ENSG00000107290|chr9:132264411-132264411|T/G|missense_variant	SETX|p.K2621T|1|0.06|ENSG00000107290|chr9:132264411-132264411|T/G|missense_variant	SETX|p.K2621T|1|0.06|ENSG00000107290|chr9:132264411-132264411|T/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.3030395507812	2	525.700237	1049.38592	-0.69939	-0.00036767	2.4208	0.0012726	1.7214	0.00090493	525.7014813250184	105.46	0.49546	103.44	103.3	103.79	-2.0161					14	9	2	0	0	0	0.027462	1	9558	9558		15.642	0	1	12258			55988	32814	46228	46268	61139	61139					-0.13679670037868163
TCFIKILTI	9	Unmodified	_TCFIKILTI_					0	0	0			REV__ENSG00000126010|ENST00000380289|GRPR	REV__ENSG00000126010|ENST00000380289|GRPR	MULTI-MSMS	OvCa9_classI_Rep3	3	526.3140258789062	2	526.314646	1050.61474	0.91829	0.00048331	-0.94242	-0.00049601	-0.024135	-1.2703E-05	526.3139752685214	125.3	2.0349	124.25	123.69	125.72	-1.0519					99	38	3	0	0	0	0.55011	1	9800	9800		37.812	4.9991	1	239120	+		55989	18767	46229	46269	61140	61140					0.09145618787488274
TCFIKILTI	9	Unmodified	_TCFIKILTI_					0	0	0			REV__ENSG00000126010|ENST00000380289|GRPR	REV__ENSG00000126010|ENST00000380289|GRPR	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.3147583007812	2	526.314646	1050.61474	-2.5993	-0.001368	2.4633	0.0012965	-0.13591	-7.1533E-05	526.3157286296546	125.6	1.7421	124.19	123.62	125.36	-1.4143					100	34	4	0	0	0	0.3249	1	11922	11922		60.118	8.7828	1	243670	+		55990	18767	46229	46269	61141	61141					0.09145618787488274
TCIIWEDL	8	Unmodified	_TCIIWEDL_					0	0	0			REV__ENSG00000170935|ENST00000509000|NCBP2L	REV__ENSG00000170935|ENST00000509000|NCBP2L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.762451171875	2	496.741511	991.468469	-0.45492	-0.00022598	-3.1716	-0.0015755	-3.6265	-0.0018014	496.7399951914878	74.422	0.14497	71.191	71.095	71.24	-3.2308					6	2	3	0	0	0	0.028476	1	5815	5815		33.516	9.3128	1	14350	+		55991	21580	46230	46270	61142	61142					-0.027606834484231513
TCKKKIGK	8	Unmodified	_TCKKKIGK_					0	0	0			REV__ENST00000461681.5_1_1:63906715-63922830:-|nuORF	REV__ENST00000461681.5_1_1:63906715-63922830:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.2859191894531	2	453.28368	904.552807	0.73053	0.00033114	-3.614	-0.0016382	-2.8835	-0.001307	453.2805377579559	48.063	0.45799	44.955	44.838	45.296	-3.1077					11	8	2	0	0	0	0.028476	1	2656	2656		10.866	0	1	18138	+		55992	26097	46231	46271	61143	61143					0.09671312159025547
TCLKEEFI	8	Unmodified	_TCLKEEFI_					0	0	0			REV__ENST00000415424.5_2_9:75766818-75769181:+|nuORF	REV__ENST00000415424.5_2_9:75766818-75769181:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.2174072265625	2	491.749336	981.484119	-0.64975	-0.00031951	-2.2341	-0.0010986	-2.8839	-0.0014181	491.7481086102788	42.513	0.29702	42.513	42.412	42.709	0					9	6	2	0	0	0	0.028476	1	2755	2755		29.15	8.2026	1	20430	+		55993	25528	46232	46272	61144	61144					-0.007363969313587404
TCLPRYSKH	9	Unmodified	_TCLPRYSKH_					0	0	0			REV__ENSG00000179104|ENST00000321196|TMTC2	REV__ENSG00000179104|ENST00000321196|TMTC2	MULTI-MSMS	OvCa9_classI_Rep2	2	552.7857055664062	2	552.784576	1103.5546	1.7554	0.00097038	1.6378	0.00090535	3.3932	0.0018757	552.7854142273841	29.865	0.63211	27.155	26.975	27.607	-2.7097					29	12	3	0	0	0	0.62352	1	780	780		29.15	1.2673	1	49044	+		55994	22101	46233	46273	61145	61145					0.00696321176951642
TCLRPLNPH	9	Unmodified	_TCLRPLNPH_					0	0	0			REV__ENST00000004982.5_2_19:36245657-36245837:-|nuORF	REV__ENST00000004982.5_2_19:36245657-36245837:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.3401489257812	2	525.779293	1049.54403	-0.443	-0.00023292	-4.3752	-0.0023004	-4.8182	-0.0025333	525.7770192167199	86.394	1.1385	84.903	84.344	85.483	-1.4906					56	21	4	0	0	0	0.027343	1	7450	7450		79.451	20.669	1	62314	+		55995	23670	46234	46274	61146	61146					0.02124338522526159
TCLTIRKWL	9	Unmodified	_TCLTIRKWL_					0	0	0		nc|ENSG00000143376|Q96L92-2|SNX27;ENST00000368841.6_1_1:151584666-151666074:+|nuORF;nc|ENSG00000143376|Q96L92-3|SNX27;ENSG00000143376|ENST00000458013|SNX27;ENST00000482791.1_1_1:151638429-151641724:+|nuORF	nc|ENSG00000143376|Q96L92-2|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	MULTI-MSMS	OvCa9_classI_Rep2	2	567.32958984375	2	567.328619	1132.64269	-2.3399	-0.0013275	4.3821	0.0024861	2.0422	0.0011586	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.59983	1	14584	14584		31.955	1.4512	1	241060			55996	5045	46235	46275	61147	61147					0.08166941767581193
TCQIPGIYY	9	Carbamidomethyl (C)	_TC(Carbamidomethyl (C))QIPGIYY_	TC(1)QIPGIYY		TC(71)QIPGIYY		0	1	0		ENSG00000123500|ENST00000651968|COL10A1	ENSG00000123500|ENST00000651968|COL10A1	ENSG00000123500|ENST00000651968|COL10A1	MULTI-MSMS	OvCa9_classI_Rep2	2	557.7623901367188	2	557.765517	1113.51648	0.10733	5.9866E-05	-3.4704	-0.0019357	-3.3631	-0.0018758	557.7634818041397	98.543	1.6879	97.65	97.313	99.001	-0.89305					95	33	4	0	0	0	0.22961	1	8959	8959		71.296	8.3173	1	588590			55997	3599	46236	46276	61148	61148	34				-0.0357360952837098
TCQIPGIYY	9	Carbamidomethyl (C)	_TC(Carbamidomethyl (C))QIPGIYY_	TC(1)QIPGIYY		TC(63)QIPGIYY		0	1	0		ENSG00000123500|ENST00000651968|COL10A1	ENSG00000123500|ENST00000651968|COL10A1	ENSG00000123500|ENST00000651968|COL10A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.7642822265625	2	557.765517	1113.51648	-0.29381	-0.00016388	-2.7115	-0.0015124	-3.0053	-0.0016763	557.7639087775158	99.968	1.2751	97.642	97.366	98.641	-2.3253					84	24	4	0	0	0	0.29717	1	8958	8958		63.306	13.77	1	768980			55998	3599	46236	46276	61149	61149	34				-0.0357360952837098
TCQIPGIYY	9	Carbamidomethyl (C)	_TC(Carbamidomethyl (C))QIPGIYY_					0	1	0		ENSG00000123500|ENST00000651968|COL10A1	ENSG00000123500|ENST00000651968|COL10A1	ENSG00000123500|ENST00000651968|COL10A1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	557.765517	1113.51648	-0.72714	-0.00040557	-2.1733	-0.0012122	-2.9004	-0.0016178	557.7641856065312	99.386	0.96691	97.701	97.423	98.39	-1.685	0.036629	0.00092974	NaN	71.296	63	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	717240			55999	3599	46236	46276			34				-0.0357360952837098
TCVPNQCF	8	Unmodified	_TCVPNQCF_					0	0	0			REV__tr|A0A553SUP8|A0A553SUP8_NIACIDUF4976domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03890PE=4SV=1	REV__tr|A0A553SUP8|A0A553SUP8_NIACIDUF4976domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03890PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	455.7584228515625	2	456.191131	910.367709	-0.20038	-9.1412E-05	-0.64972	-0.0002964	-0.85011	-0.00038781	456.1909907365186	42.731	0.34346	42.731	42.583	42.926	0					12	7	3	0	0	0	0.028476	1	2759	2759		33.516	0	1	64769	+		56000	31106	46237	46277	61150	61150					-0.09106038702907426
TDAGASDVLI	10	Unmodified	_TDAGASDVLI_					0	0	0		ENST00000374767.4_1_9:107510045-107513286:+|nuORF	ENST00000374767.4_1_9:107510045-107513286:+|nuORF	ENST00000374767.4_1_9:107510045-107513286:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	481.24676513671875	2	481.245472	960.476391	-0.17327	-8.3387E-05	0.27576	0.00013271	0.10249	4.9322E-05	481.2454026831636	58.757	0.55823	58.757	58.488	59.046	0					53	13	5	0	0	0	0.22395	1	5005	5005		90.777	3.0802	1	3752700			56001	11041	46238	46278	61151	61151					-0.005428329272717747
TDAVPWALL	9	Unmodified	_TDAVPWALL_					0	0	0			REV__nc|ENSG00000130055|Q9HCC8-2|GDPD2	REV__nc|ENSG00000130055|Q9HCC8-2|GDPD2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.2597961425781	2	493.271293	984.528032	-0.58754	-0.00028982	1.2751	0.00062898	0.68757	0.00033916	493.2717993030529	40.75	0.83601	37.796	37.421	38.257	-2.9541					30	15	3	0	0	0	0.027462	1	1817	1817		31.955	18.996	1	61591	+		56002	18920	46239	46279	61152	61152					0.035149555572729696
TDDYMVKPV	9	Unmodified	_TDDYMVKPV_					0	0	0		tr|A0A7D6VLQ9|A0A7D6VLQ9_9CLOTHemeresponseregulatorHssROS=ClostridiumintestinaleOX=36845GN=HZF06_12885PE=4SV=1	tr|A0A7D6VLQ9|A0A7D6VLQ9_9CLOTHemeresponseregulatorHssROS=ClostridiumintestinaleOX=36845GN=HZF06_12885PE=4SV=1	tr|A0A7D6VLQ9|A0A7D6VLQ9_9CLOTHemeresponseregulatorHssROS=ClostridiumintestinaleOX=36845GN=HZF06_12885PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	534.2598876953125	2	534.257525	1066.5005	1.7211	0.00091952	3.2819	0.0017534	5.003	0.0026729	534.2591942848518	107.12	2.0425	107.12	106.67	108.71	0					89	47	3	0	0	0	0.24951	1	12052	12052		68.787	6.6794	1	12038000			56003	34640	46240	46280	61153	61153					-0.030093157652800073
TDDYMVKPV	9	Unmodified	_TDDYMVKPV_					0	0	0		tr|A0A7D6VLQ9|A0A7D6VLQ9_9CLOTHemeresponseregulatorHssROS=ClostridiumintestinaleOX=36845GN=HZF06_12885PE=4SV=1	tr|A0A7D6VLQ9|A0A7D6VLQ9_9CLOTHemeresponseregulatorHssROS=ClostridiumintestinaleOX=36845GN=HZF06_12885PE=4SV=1	tr|A0A7D6VLQ9|A0A7D6VLQ9_9CLOTHemeresponseregulatorHssROS=ClostridiumintestinaleOX=36845GN=HZF06_12885PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	534.2587280273438	2	534.257525	1066.5005	-0.87643	-0.00046824	3.8611	0.0020628	2.9847	0.0015946	534.2594436353716	107.28	2.2603	106.97	106.37	108.63	-0.30836					108	45	3	0	0	0	0.22621	3	10020	9994;10009;10020		71.877	15.156	1	322070			56004	34640	46240	46280	61154;61155;61156	61156					-0.030093157652800073
TDDYMVKPV	9	Unmodified	_TDDYMVKPV_					0	0	0		tr|A0A7D6VLQ9|A0A7D6VLQ9_9CLOTHemeresponseregulatorHssROS=ClostridiumintestinaleOX=36845GN=HZF06_12885PE=4SV=1	tr|A0A7D6VLQ9|A0A7D6VLQ9_9CLOTHemeresponseregulatorHssROS=ClostridiumintestinaleOX=36845GN=HZF06_12885PE=4SV=1	tr|A0A7D6VLQ9|A0A7D6VLQ9_9CLOTHemeresponseregulatorHssROS=ClostridiumintestinaleOX=36845GN=HZF06_12885PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	534.2582397460938	2	534.257525	1066.5005	0.83747	0.00044743	2.2598	0.0012073	3.0973	0.0016548	534.2586390509219	107.92	2.3424	106.73	106.27	108.61	-1.1978					105	44	4	0	0	0	0.18193	3	7692	7681;7686;7692		79.451	15.244	1	568740			56005	34640	46240	46280	61157;61158;61159	61159					-0.030093157652800073
TDENRLVGAL	10	Unmodified	_TDENRLVGAL_					0	0	0		tr|A0A7D7A5A1|A0A7D7A5A1_9CLOTPhosphoglyceratekinaseOS=ClostridiumintestinaleOX=36845GN=pgkPE=3SV=1	tr|A0A7D7A5A1|A0A7D7A5A1_9CLOTPhosphoglyceratekinaseOS=ClostridiumintestinaleOX=36845GN=pgkPE=3SV=1	tr|A0A7D7A5A1|A0A7D7A5A1_9CLOTPhosphoglyceratekinaseOS=ClostridiumintestinaleOX=36845GN=pgkPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.7638549804688	2	544.290745	1086.56694	-0.92701	-0.00050456	0.83227	0.000453	-0.094731	-5.1561E-05	544.2908534396657	37.154	0.50623	37.154	36.885	37.391	0					20	10	3	0	0	0	0.026782	1	2027	2027		45.972	5.1941	1	108720			56006	36163	46241	46281	61160	61160					0.027116361209891693
TDEVLVPVPL	10	Unmodified	_TDEVLVPVPL_					0	0	0			REV__ENSG00000197442|ENST00000359015|MAP3K5	REV__ENSG00000197442|ENST00000359015|MAP3K5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.7843017578125	2	541.310615	1080.60668	-0.42965	-0.00023257	-1.6134	-0.00087337	-2.0431	-0.0011059	541.3111244665239	96.524	0.80872	94.098	93.659	94.468	-2.4256					19	15	2	0	0	0	0.026752	1	8511	8511		53.351	10.955	1	21515	+		56007	22925	46242	46282	61161	61161					0.06959763071722591
TDFLKREL	8	Unmodified	_TDFLKREL_					0	0	0		tr|A0A553SFT7|A0A553SFT7_NIACIRecombinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09505PE=4SV=1	tr|A0A553SFT7|A0A553SFT7_NIACIRecombinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09505PE=4SV=1	tr|A0A553SFT7|A0A553SFT7_NIACIRecombinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09505PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.7649230957031	2	511.287474	1020.5604	-0.275	-0.0001406	0.10893	5.5697E-05	-0.16606	-8.4907E-05	511.2873438758334	58.105	1.5542	54.76	54.495	56.049	-3.3449					38	30	2	0	0	0	0.028476	1	3952	3952		76.774	20.34	1	54576			56008	33076	46243	46283	61162	61162					0.05093742960275449
TDFPHGLVL	9	Unmodified	_TDFPHGLVL_					0	0	0			REV__ENST00000533629.5_1_11:65144527-65149406:-|nuORF	REV__ENST00000533629.5_1_11:65144527-65149406:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	499.7713623046875	2	499.768917	997.523281	2.1231	0.001061	3.6536	0.001826	5.7767	0.002887	499.7705543108703	106.09	1.1463	106.09	105.66	106.81	0					58	25	4	0	0	0	0.34496	1	11946	11946		57.811	0	1	2426500	+		56009	20724	46244	46284	61163	61163					0.024420714145321654
TDFPVRVL	8	Unmodified	_TDFPVRVL_					0	0	0		PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant;ENSG00000205038|ENST00000378402|PKHD1L1;PKHD1L1|p.W985Kfs*40|1|0.06|ENSG00000205038|chr8:109427107-109427108|-/CAAGACCACATCTCATGCTCCTTTGCCTCTCT|frameshift_variant;PKHD1L1|p.M2145Rfs*71|1|0.16|ENSG00000205038|chr8:109452207-109452207|T/-|frameshift_variant	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	473.7706298828125	2	473.77146	945.528367	1.1573	0.00054828	-1.4641	-0.00069365	-0.30682	-0.00014536	473.77063118541406	105.82	1.5452	104.47	104.04	105.59	-1.3482					71	29	4	0	0	0	0.17531	3	7448	7430;7442;7448		128.86	49.41	1	318200			56010	9047	46245	46285	61164;61165;61166	61166					0.053423752771550426
TDFPVRVL	8	Unmodified	_TDFPVRVL_					0	0	0		PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant;ENSG00000205038|ENST00000378402|PKHD1L1;PKHD1L1|p.W985Kfs*40|1|0.06|ENSG00000205038|chr8:109427107-109427108|-/CAAGACCACATCTCATGCTCCTTTGCCTCTCT|frameshift_variant;PKHD1L1|p.M2145Rfs*71|1|0.16|ENSG00000205038|chr8:109452207-109452207|T/-|frameshift_variant	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.7723693847656	2	473.77146	945.528367	-0.20586	-9.753E-05	0.0888	4.2071E-05	-0.11706	-5.5459E-05	473.77133268936427	106.39	1.4522	104.38	104.05	105.5	-2.0161					61	27	3	0	0	0	0.25402	4	9687	9676;9687;9699;9712		115.46	49.656	1	444410			56011	9047	46245	46285	61167;61168;61169;61170	61168					0.053423752771550426
TDFPVRVL	8	Unmodified	_TDFPVRVL_					0	0	0		PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant;ENSG00000205038|ENST00000378402|PKHD1L1;PKHD1L1|p.W985Kfs*40|1|0.06|ENSG00000205038|chr8:109427107-109427108|-/CAAGACCACATCTCATGCTCCTTTGCCTCTCT|frameshift_variant;PKHD1L1|p.M2145Rfs*71|1|0.16|ENSG00000205038|chr8:109452207-109452207|T/-|frameshift_variant	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	473.77146	945.528367	-0.54776	-0.00025951	0.45545	0.00021578	-0.092308	-4.3733E-05	473.77151889344805	105.05	1.3405	104.61	104.31	105.65	-0.43642	0.12413	0.00041923	NaN	128.86	55	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	352410			56012	9047	46245	46285							0.053423752771550426
TDFVRLLPD	9	Unmodified	_TDFVRLLPD_					0	0	0			REV__DNAJB9-DENND5B|1|fusion	REV__DNAJB9-DENND5B|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3077392578125	2	538.292756	1074.57096	1.4299	0.00076971	3.8778	0.0020874	5.3077	0.0028571	538.294121454927	111.83	0.73483	111.83	111.51	112.25	0					22	15	2	0	0	0	0.027295	1	12714	12714		84.916	17.422	1	98085	+		56013	16318	46246	46286	61171	61171					0.036657256147236694
TDFYATGIN	9	Unmodified	_TDFYATGIN_					0	0	0		ENST00000425046.1_1_3:4345037-4358927:+|nuORF;nc|ENSG00000170364|Q53H47-3|SETMAR;ENSG00000170364|ENST00000358065|SETMAR	ENST00000425046.1_1_3:4345037-4358927:+|nuORF	ENST00000425046.1_1_3:4345037-4358927:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.7950134277344	2	501.232364	1000.45018	-0.37157	-0.00018624	-3.7568	-0.001883	-4.1283	-0.0020693	501.23061897442625	108.23	0.34721	108	107.78	108.12	-0.22498					8	6	2	0	0	0	0.027462	1	10144	10144		21.96	1.013	1	8668.6			56014	7097	46247	46287	61172	61172					-0.05003102098760337
TDGMAEHALID	11	Unmodified	_TDGMAEHALID_					0	0	0			REV__ENSG00000171136|ENST00000431365|RLN3	REV__ENSG00000171136|ENST00000431365|RLN3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	585.8107299804688	2	586.766245	1171.51794	0.6802	0.00039912	-3.7874	-0.0022223	-3.1073	-0.0018232	586.7640299819618	67.382	0.83832	63.892	63.64	64.478	-3.4902					39	16	3	0	0	0	0.025521	1	4936	4936		37.812	0	1	105880	+		56015	21597	46248	46288	61173	61173					-0.06096020230256727
TDGYFIVGEPD	11	Unmodified	_TDGYFIVGEPD_					0	0	0			REV__SHBG|p.L175Afs*39|1|0.19|ENSG00000129214|chr17:7631322-7631323|-/G|frameshift_variant	REV__SHBG|p.L175Afs*39|1|0.19|ENSG00000129214|chr17:7631322-7631323|-/G|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	606.7766723632812	2	606.774593	1211.53463	0.85223	0.00051711	1.8506	0.0011229	2.7028	0.00164	606.7754588297506	159.93	1.8224	159.93	159.24	161.06	0					77	36	3	0	0	0	0.69081	1	18720	18720		32.812	1.2826	1	717280	+	+	56016	16220	46249	46289	61174	61174					-0.06267196072667502
TDHETAALPIA	11	Unmodified	_TDHETAALPIA_					0	0	0			REV__ENST00000524227.5_1_8:41525962-41555361:-|nuORF	REV__ENST00000524227.5_1_8:41525962-41555361:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	569.788330078125	2	569.790578	1137.5666	-0.9559	-0.00054466	-0.35458	-0.00020204	-1.3105	-0.0007467	569.7902502017694	146.03	1.5267	144.59	144.15	145.67	-1.4357					62	26	4	0	0	0	0.69081	1	14344	14344		32.812	0	1	170700	+		56017	16581	46250	46290	61175	61175					0.0033221640117062634
TDIGAQKL	8	Unmodified	_TDIGAQKL_					0	0	0			REV__tr|A0A553SRA0|A0A553SRA0_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00690PE=3SV=1	REV__tr|A0A553SRA0|A0A553SRA0_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00690PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	423.22650146484375	2	423.239993	844.465432	-0.21134	-8.9448E-05	-0.44551	-0.00018856	-0.65685	-0.00027801	423.2396065631679	54.74	0.55939	54.74	54.505	55.064	0					22	12	2	0	0	0	0.028476	1	4433	4433		45.952	5.3793	1	429030	+		56018	30710	46251	46291	61176	61176					0.03697809489096926
TDILIYVI	8	Unmodified	_TDILIYVI_					0	0	0		ENSG00000138175|ENST00000260746|ARL3	ENSG00000138175|ENST00000260746|ARL3	ENSG00000138175|ENST00000260746|ARL3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.2462463378906	2	475.283869	948.553185	-0.3992	-0.00018973	-2.7313	-0.0012981	-3.1305	-0.0014879	475.28241890967496	55.494	1.5743	52.199	51.546	53.12	-3.2944					51	30	2	0	0	0	0.028476	1	3443	3443		65.897	23.423	1	164080			56019	4666	46252	46292	61177	61177					0.07685010359853095
TDIMSLPGWS	10	Unmodified	_TDIMSLPGWS_					0	0	0			REV__ENST00000383808.6_1_3:10048968-10049073:-|nuORF	REV__ENST00000383808.6_1_3:10048968-10049073:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.7625122070312	2	553.762975	1105.5114	0.34125	0.00018897	-4.0935	-0.0022668	-3.7522	-0.0020779	553.7604035777488	47.859	1.1686	44.751	44.384	45.553	-3.1077					53	22	3	0	0	0	0.55359	1	2609	2609		47.657	1.7054	1	220760	+		56020	25222	46253	46293	61178	61178					-0.03713913390970447
TDIMSLPGWS	10	Unmodified	_TDIMSLPGWS_					0	0	0			REV__ENST00000383808.6_1_3:10048968-10049073:-|nuORF	REV__ENST00000383808.6_1_3:10048968-10049073:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	553.762975	1105.5114	0.07756	4.295E-05	-4.6724	-0.0025874	-4.5949	-0.0025445	553.7602536067781	47.85	0.79294	45.14	44.836	45.629	-2.7097	0.19458	-0.00034205	NaN	47.657	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26249	+		56021	25222	46253	46293							-0.03713913390970447
TDIMSLPGWS	10	Unmodified	_TDIMSLPGWS_					0	0	0			REV__ENST00000383808.6_1_3:10048968-10049073:-|nuORF	REV__ENST00000383808.6_1_3:10048968-10049073:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	553.762975	1105.5114	0.34125	0.00018897	-4.0935	-0.0022668	-3.7522	-0.0020779	553.7604035777488	47.859	1.1686	44.751	44.384	45.553	-3.1077	-0.19458	0.00029914	NaN	47.657	53	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	220760	+		56022	25222	46253	46293							-0.03713913390970447
TDIQFNINE	9	Unmodified	_TDIQFNINE_					0	0	0			REV__tr|A0A7D6VLQ0|A0A7D6VLQ0_9CLOTLsafamilyABC-FtyperibosomalprotectionproteinOS=ClostridiumintestinaleOX=36845GN=lsaPE=4SV=1	REV__tr|A0A7D6VLQ0|A0A7D6VLQ0_9CLOTLsafamilyABC-FtyperibosomalprotectionproteinOS=ClostridiumintestinaleOX=36845GN=lsaPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.3350219726562	2	547.261653	1092.50875	-0.52562	-0.00028765	2.4293	0.0013295	1.9037	0.0010418	547.2619270849822	54.302	0.375	54.302	54.13	54.505	0					16	8	3	0	0	0	0.027462	1	4356	4356		32.812	3.6629	1	157370	+		56023	31119	46254	46294	61179	61179					-0.03380045524295383
TDKAGIIR	8	Unmodified	_TDKAGIIR_					0	0	0		tr|A0A553SIF9|A0A553SIF9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_14785PE=4SV=1	tr|A0A553SIF9|A0A553SIF9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_14785PE=4SV=1	tr|A0A553SIF9|A0A553SIF9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_14785PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	437.7530517578125	2	437.261259	872.507966	0.41398	0.00018102	-1.4312	-0.00062581	-1.0172	-0.0004448	437.2605494563351	38.628	0.577	38.628	38.486	39.063	0					14	12	2	0	0	0	0.028476	1	2258	2258		25.45	0	1	116930			56024	33378	46255	46295	61180	61180					0.0666120461733044
TDKLVVAIL	9	Unmodified	_TDKLVVAIL_					0	0	0			REV__CON__A2I7N1	REV__CON__A2I7N1	MULTI-MSMS	OvCa99_classI_Rep5	1	486.3124084472656	2	486.310418	970.606283	0.90838	0.00044175	0.56318	0.00027388	1.4716	0.00071563	486.3106117021353	156.85	1.0537	156.85	156.6	157.65	0					38	20	3	0	0	0	0.44568	1	18393	18393		47.657	3.5405	1	125660	+	+	56025	16168	46256	46296	61181	61181					0.11980388142512766
TDKRTVPYI	9	Unmodified	_TDKRTVPYI_					0	0	0		nc|ENSG00000152784|Q9NQV8-2|PRDM8;ENSG00000152784|ENST00000415738|PRDM8	nc|ENSG00000152784|Q9NQV8-2|PRDM8	nc|ENSG00000152784|Q9NQV8-2|PRDM8	MULTI-SECPEP	OvCa9_classI_Rep2	2	546.3271484375	2	546.806031	1091.59751	-0.65006	-0.00035545	0.4816	0.00026334	-0.16846	-9.2113E-05	546.8062069356885	104.18	1.434	103.61	103.23	104.66	-0.57639					46	28	2	0	0	0	0.027433	1	9702	9702		45.972	15.655	1	87722			56026	5644	46257	46297	61182	61182					0.05537414506034111
TDLAKLLIF	9	Unmodified	_TDLAKLLIF_					0	0	0		ENSG00000166828|ENST00000300061|SCNN1G	ENSG00000166828|ENST00000300061|SCNN1G	ENSG00000166828|ENST00000300061|SCNN1G	MULTI-MSMS	OvCa9_classI_Rep2	2	517.3190307617188	2	517.318243	1032.62193	0.83877	0.00043391	2.1662	0.0011206	3.005	0.0015545	517.3191831149613	112.7	1.9244	112.58	112.28	114.2	-0.12174					94	38	4	0	0	0	0.19758	1	10690	10690		76.774	7.1465	1	430350			56027	6718	46258	46298	61183	61183					0.10692674659571821
TDLAKLYKAL	10	Unmodified	_TDLAKLYKAL_					0	0	0			REV__ENSG00000125817|ENST00000379751|CENPB	REV__ENSG00000125817|ENST00000379751|CENPB	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.324462890625	2	568.339707	1134.66486	0.17433	9.9079E-05	4.1454	0.002356	4.3197	0.0024551	568.341518434894	62.246	0.50635	62.246	61.994	62.501	0					28	11	4	0	0	0	0.026551	1	5504	5504		60.118	0	1	406020	+		56028	18748	46259	46299	61184	61184					0.10291444716995102
TDLGLAKVF	9	Unmodified	_TDLGLAKVF_					0	0	0			REV__nc|ENSG00000090686|Q86UV5-7|USP48	REV__nc|ENSG00000090686|Q86UV5-7|USP48	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.3128967285156	2	482.279118	962.543683	0.099037	4.7764E-05	0.036932	1.7812E-05	0.13597	6.5575E-05	482.27893323541946	112.57	1.2028	111.05	110.69	111.89	-1.5111					44	23	3	0	0	0	0.027448	1	10437	10437		35.618	13.658	1	71175	+		56029	17232	46260	46300	61185	61185					0.06091242074330694
TDLKYLLV	8	Unmodified	_TDLKYLLV_					0	0	0		ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	ENSG00000089289|ENST00000356413|IGBP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.78936767578125	2	482.789318	963.564084	0.070569	3.407E-05	-3.492	-0.0016859	-3.4214	-0.0016518	482.787546504129	59.467	2.1768	56.075	55.705	57.882	-3.392					84	43	4	0	0	0	0.65062	1	3986	3986		53.351	0	1	1125800			56030	1820	46261	46301	61186	61186					0.08084412734126545
TDLLIKPVQR	10	Unmodified	_TDLLIKPVQR_					0	0	0		nc|ENSG00000038382|O75962-2|TRIO;ENSG00000038382|ENST00000344204|TRIO;nc|ENSG00000038382|O75962-5|TRIO;nc|ENSG00000038382|O75962-4|TRIO;ENST00000515144.5_1_5:14293150-14488426:+|nuORF	nc|ENSG00000038382|O75962-2|TRIO	nc|ENSG00000038382|O75962-2|TRIO	MULTI-MSMS	OvCa9_classI_Rep3	3	591.8649291992188	2	591.86388	1181.71321	0.72408	0.00042856	0.6408	0.00037927	1.3649	0.00080783	591.8641978183085	65.182	2.2339	62.236	61.844	64.078	-2.9459					105	43	4	0	0	0	0.64697	1	2570	2570		36.447	5.9431	1	184170			56031	1098	46262	46302	61187	61187					0.1296193835687518
TDLLRSRKFQW	11	Unmodified	_TDLLRSRKFQW_					0	0	0			REV__nc|ENSG00000163322|Q6UWZ7-2|ABRAXAS1	REV__nc|ENSG00000163322|Q6UWZ7-2|ABRAXAS1	MULTI-MSMS	OvCa9_classI_Rep3	3	483.93658447265625	3	483.936887	1448.78883	0.61076	0.00029557	-1.0159	-0.00049162	-0.40512	-0.00019605	483.9363500379811	67.695	1.7974	64.808	64.441	66.239	-2.8873					108	35	5	0	0	0	0.72477	1	2887	2887		18.531	3.1979	1	342710	+		56032	20826	46263	46303	61188	61188					0.08238915537162939
TDLNDTARI	9	Unmodified	_TDLNDTARI_					0	0	0		ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	ENSG00000115850|ENST00000264162|LCT	MULTI-MSMS	OvCa99_classI_Rep5	1	509.7613220214844	2	509.76182	1017.50909	0.11132	5.6745E-05	-0.68668	-0.00035004	-0.57537	-0.0002933	509.7613510926521	31.782	0.54597	31.782	31.608	32.154	0					18	10	2	0	0	0	0.10363	1	1337	1337		96.19	5.8206	1	801500			56033	3133	46264	46304	61189	61189					0.0010337419557799876
TDLNVSSSTI	10	Unmodified	_TDLNVSSSTI_					0	0	0		ENST00000434353.6_1_X:148631062-148631386:+|nuORF	ENST00000434353.6_1_X:148631062-148631386:+|nuORF	ENST00000434353.6_1_X:148631062-148631386:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.7998657226562	2	518.761486	1035.50842	-0.71589	-0.00037138	-3.5758	-0.001855	-4.2917	-0.0022264	518.7595504986992	86.711	0.75287	84.535	84.131	84.884	-2.1768					23	14	2	0	0	0	0.026867	1	5144	5144		35.152	10.633	1	113250			56034	11840	46265	46305	61190	61190					-0.007914652441286307
TDLNVSSSTI	10	Unmodified	_TDLNVSSSTI_					0	0	0		ENST00000434353.6_1_X:148631062-148631386:+|nuORF	ENST00000434353.6_1_X:148631062-148631386:+|nuORF	ENST00000434353.6_1_X:148631062-148631386:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	518.761486	1035.50842	-0.46429	-0.00024086	-3.308	-0.0017161	-3.7723	-0.0019569	518.7598336339014	86.131	0.75626	84.64	84.146	84.903	-1.4906	0.073979	-3.7654E-05	NaN	28.081	38	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52757			56035	11840	46265	46305							-0.007914652441286307
TDLRAKTAAT	10	Unmodified	_TDLRAKTAAT_					0	0	0			REV__ENST00000460968.1_1_2:74666898-74667252:-|nuORF	REV__ENST00000460968.1_1_2:74666898-74667252:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.2938842773438	2	524.293288	1046.57202	-0.58406	-0.00030622	2.3522	0.0012332	1.7681	0.000927	524.2944125180313	22.173	1.1824	20.835	20.574	21.757	-1.3386					45	28	2	0	0	0	0.74374	1	298	298		25.574	1.0549	1	49605	+		56036	24284	46266	46306	61191	61191					0.05059939983584627
TDLTLPWNKI	10	Unmodified	_TDLTLPWNKI_					0	0	0		tr|A0A7D6VR75|A0A7D6VR75_9CLOTS8familyserinepeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23735PE=3SV=1	tr|A0A7D6VR75|A0A7D6VR75_9CLOTS8familyserinepeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23735PE=3SV=1	tr|A0A7D6VR75|A0A7D6VR75_9CLOTS8familyserinepeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_23735PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	400.904541015625	3	400.892284	1199.65502	2.3332	0.00093537	-1.7512	-0.00070205	0.58201	0.00023332	400.8916806852435	83.757	0.2905	81.094	80.974	81.265	-2.6629					8	5	2	0	0	0	0.026493	1	6975	6975		66.962	0	1	10816			56037	34901	46267	46307	61192	61192					0.06318256711620052
TDMFLVCITL	10	Unmodified	_TDMFLVCITL_					0	0	0		ENST00000588551.5_1_19:30101602-30101866:+|nuORF	ENST00000588551.5_1_19:30101602-30101866:+|nuORF	ENST00000588551.5_1_19:30101602-30101866:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	578.289794921875	2	578.293053	1154.57155	-7.6654	-0.0044328	2.0514	0.0011863	-5.614	-0.0032465	578.2940529397285	163.97	0.95636	162.57	161.7	162.66	-1.3925					62	21	3	0	0	0	0.6104	1	14291	14291		40.778	3.6191	1	144290			56038	14076	46268	46308	61193	61193					0.00045060947900310566
TDMIPINAK	9	Unmodified	_TDMIPINAK_					0	0	0			REV__ENST00000588629.1_1_17:40610935-40622311:+|nuORF	REV__ENST00000588629.1_1_17:40610935-40622311:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	501.76861572265625	2	501.76806	1001.52157	0.0029535	1.482E-06	4.3694	0.0021924	4.3723	0.0021939	501.76965480882626	31.596	0.49643	31.596	31.41	31.906	0					21	9	3	0	0	0	0.40667	1	1316	1316		51.335	5.3835	1	159200	+		56039	15678	46269	46309	61194	61194					0.0208669433425257
TDMMIFDLV	9	Oxidation (M)	_TDM(Oxidation (M))MIFDLV_		TDM(0.969)M(0.031)IFDLV		TDM(15)M(-15)IFDLV	0	0	1		TG|p.S2274Lfs*71|1|0.03|ENSG00000042832|chr8:133019639-133019640|-/TG|frameshift_variant;nc|ENSG00000042832|P01266-2|TG;ENSG00000042832|ENST00000220616|TG;TG|p.Q1926Sfs*11|1|0.04|ENSG00000042832|chr8:132967881-132967896|CACAGGTGTGTGATGA/-|frameshift_variant;TG|p.N967Rfs*35|1|0.08|ENSG00000042832|chr8:132893826-132893829|GAAT/-|frameshift_variant	TG|p.S2274Lfs*71|1|0.03|ENSG00000042832|chr8:133019639-133019640|-/TG|frameshift_variant	TG|p.S2274Lfs*71|1|0.03|ENSG00000042832|chr8:133019639-133019640|-/TG|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	550.7545166015625	2	550.753761	1099.49297	0.23988	0.00013211	-0.12181	-6.7086E-05	0.11807	6.5029E-05	550.7534925768304	161.89	0.91498	161.89	161.56	162.48	0					40	17	3	0	0	0	0.36502	1	18990	18990		55.504	7.5886	2	285760			56040	1127	46270	46310	61195	61195		40			-0.05279791357202157
TDNDEFLEAE	10	Unmodified	_TDNDEFLEAE_					0	0	0		tr|A0A553SRA1|A0A553SRA1_NIACISulfate/molybdateABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_00665PE=4SV=1	tr|A0A553SRA1|A0A553SRA1_NIACISulfate/molybdateABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_00665PE=4SV=1	tr|A0A553SRA1|A0A553SRA1_NIACISulfate/molybdateABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_00665PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	591.7444458007812	2	591.74349	1181.47243	0.89268	0.00052824	2.3202	0.001373	3.2129	0.0019012	591.7443132783292	141.96	0.59894	141.96	141.64	142.23	0					21	11	3	0	0	0	0.48198	1	16589	16589		56.721	5.5284	1	75253			56041	34241	46271	46311	61196	61196					-0.11104967211645089
TDNIRLNQ	8	Unmodified	_TDNIRLNQ_					0	0	0		ENSG00000173013|ENST00000310085|CCDC96	ENSG00000173013|ENST00000310085|CCDC96	ENSG00000173013|ENST00000310085|CCDC96	MULTI-SECPEP	OvCa9_classI_Rep3	3	487.2821350097656	2	487.256705	972.498858	-1.0278	-0.00050079	2.6686	0.0013003	1.6408	0.0007995	487.2566636750277	95.079	0.40178	93.183	93.063	93.465	-1.8956					10	7	2	0	0	0	0.028476	1	6196	6196		45.952	0	1	17317			56042	7342	46272	46312	61197	61197					0.011508112609817545
TDNKLKLGLS	10	Unmodified	_TDNKLKLGLS_					0	0	0			REV__nc|ENSG00000186376|P51815-2|ZNF75D	REV__nc|ENSG00000186376|P51815-2|ZNF75D	MULTI-SECPEP	OvCa9_classI_Rep2	2	545.317626953125	2	544.819138	1087.62372	-1.4459	-0.00078777	0.3997	0.00021776	-1.0462	-0.00057001	544.81935802026	61.24	1.6894	58.481	58.04	59.73	-2.7593					58	32	3	0	0	0	0.026553	1	4672	4672		66.429	0	1	159890	+		56043	22578	46273	46313	61198	61198					0.08341683677531364
TDNSKKQVIT	10	Unmodified	_TDNSKKQVIT_					0	0	0		tr|A0A7D6VRM2|A0A7D6VRM2_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_20190PE=4SV=1	tr|A0A7D6VRM2|A0A7D6VRM2_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_20190PE=4SV=1	tr|A0A7D6VRM2|A0A7D6VRM2_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_20190PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.321533203125	2	567.311677	1132.6088	-0.59537	-0.00033776	1.2688	0.0007198	0.67342	0.00038204	567.3116767506837	34.036	0.28796	34.036	33.921	34.209	0					10	5	3	0	0	0	0.027118	1	1601	1601		32.812	0	1	59271			56044	34943	46274	46314	61199	61199					0.04780191809527423
TDNVKQSLSKK	11	Unmodified	_TDNVKQSLSKK_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;DNAH1|p.E2311Rfs*58|1|0.32|ENSG00000114841|chr3:52372997-52372998|-/A|frameshift_variant;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;DNAH1|p.Q1748Tfs*9|1|0.17|ENSG00000114841|chr3:52363140-52363141|-/AA|frameshift_variant;nc|ENSG00000114841|Q9P2D7-3|DNAH1;ENST00000497875.1_1_3:52356446-52387784:+|nuORF	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	OvCa99_classI_Rep5	1	624.82666015625	2	624.351334	1246.68811	1.3304	0.00083066	-4.3008	-0.0026852	-2.9704	-0.0018546	624.3483042837372	133.12	1.1631	133.12	132.8	133.96	0					45	24	3	0	0	0	0.024982	1	15521	15521		56.434	0	1	283970			56045	3045	46275	46315	61200	61200					0.0746383876364689
TDPNIKLLQEI	11	Unmodified	_TDPNIKLLQEI_					0	0	0			REV__tr|A0A553STA7|A0A553STA7_NIACIIron-dicitrateABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_04625PE=3SV=1	REV__tr|A0A553STA7|A0A553STA7_NIACIIron-dicitrateABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_04625PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	642.3640747070312	2	642.36391	1282.71327	-5.8794	-0.0037767	3.8793	0.002492	-2	-0.0012847	642.3674092585509	163.6	1.8703	163.37	162.72	164.59	-0.22696					197	63	5	0	0	0	0.70142	1	16710	16710		29.17	1.0886	1	233960	+		56046	30938	46276	46316	61201	61201					0.08321893566221661
TDPQSLLPP	9	Unmodified	_TDPQSLLPP_					0	0	0		ENST00000381605.8_1_20:1546098-1546804:-|nuORF	ENST00000381605.8_1_20:1546098-1546804:-|nuORF	ENST00000381605.8_1_20:1546098-1546804:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.23785400390625	2	484.258382	966.502212	-0.05322	-2.5772E-05	0.80899	0.00039176	0.75577	0.00036599	484.2582833735464	57.703	0.76239	54.358	54.086	54.849	-3.3449					37	14	4	0	0	0	0.027462	1	3734	3734		38.806	0	1	83586			56047	11168	46277	46317	61202	61202					0.017620613150143072
TDPRLPNKI	9	Unmodified	_TDPRLPNKI_					0	0	0		ENST00000451484.6_1_1:151694382-151701309:+|nuORF;ENSG00000178796|ENST00000479191|RIIAD1	ENST00000451484.6_1_1:151694382-151701309:+|nuORF	ENST00000451484.6_1_1:151694382-151701309:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	527.305908203125	2	527.306198	1052.59784	-0.57511	-0.00030326	0.4213	0.00022215	-0.15381	-8.1105E-05	527.3061602728084	45.891	1.1468	43.181	42.797	43.943	-2.7097					58	22	4	0	0	0	0.53483	1	2711	2711		39.253	0	1	225920			56048	7777	46278	46318	61203	61203					0.07364834225904815
TDPTELEERA	10	Unmodified	_TDPTELEERA_					0	0	0		nc|ENSG00000132016|Q0VDD7-2|BRME1;ENSG00000132016|ENST00000586783|BRME1	nc|ENSG00000132016|Q0VDD7-2|BRME1	nc|ENSG00000132016|Q0VDD7-2|BRME1	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.9786376953125	2	580.775125	1159.5357	-0.48584	-0.00028216	4.1053	0.0023842	3.6194	0.0021021	580.7772597879881	103.5	1.431	103.5	102.98	104.41	0					76	33	4	0	0	0	0.026681	1	11634	11634		22.58	0	1	4151900			56049	4107	46279	46319	61204	61204					-0.03768981703751706
TDPTVTFCV	9	Unmodified	_TDPTVTFCV_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-2|FAT4	REV__nc|ENSG00000196159|Q6V0I7-2|FAT4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.7684326171875	2	491.731143	981.447733	0.16474	8.1006E-05	3.3054	0.0016254	3.4701	0.0017064	491.7324507756241	68.937	0.59024	65.447	65.212	65.802	-3.4902					16	11	2	0	0	0	0.027462	1	5128	5128		7.1934	0	1	29839	+		56050	29073	46280	46320	61205	61205					-0.04373273828070978
TDPVAHCTGR	10	Unmodified	_TDPVAHCTGR_					0	0	0			REV__nc|ENSG00000183091|P20929-4|NEB	REV__nc|ENSG00000183091|P20929-4|NEB	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.7467041015625	2	528.74819	1055.48183	0.95382	0.00050433	-1.2466	-0.00065916	-0.29282	-0.00015483	528.7476659855531	138.1	1.5687	136.57	136.03	137.59	-1.5284					55	34	2	0	0	0	0.74374	1	13451	13451		25.574	0	1	30504	+		56051	22341	46281	46321	61206	61206					-0.04369432616454105
TDQQTGQKI	9	Unmodified	_TDQQTGQKI_					0	0	0		ENST00000475707.5_1_3:15045421-15079667:+|nuORF;ENSG00000177463|ENST00000425241|NR2C2;nc|ENSG00000177463|P49116-2|NR2C2	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	ENST00000475707.5_1_3:15045421-15079667:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	509.7621765136719	2	509.76182	1017.50909	0.11836	6.0333E-05	-0.055473	-2.8278E-05	0.062882	3.2055E-05	509.7616173506393	46.566	0.61269	46.566	46.326	46.938	0					36	13	4	0	0	0	0.13504	1	3300	3300		87.696	5.3914	1	2614000			56052	7683	46282	46322	61207	61207					0.0010337419557799876
TDREDINSL	9	Unmodified	_TDREDINSL_					0	0	0		ENST00000507004.1_1_5:43298575-43313480:-|nuORF;ENST00000507293.1_1_5:43298575-43313499:-|nuORF;ENSG00000112972|ENST00000325110|HMGCS1	ENST00000507004.1_1_5:43298575-43313480:-|nuORF	ENST00000507004.1_1_5:43298575-43313480:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.7575073242188	2	531.756735	1061.49892	-1.6005	-0.00085105	1.5423	0.00082015	-0.058101	-3.0895E-05	531.7574781057406	65.543	1.4596	62.058	61.743	63.202	-3.4854					49	29	2	0	0	0	0.13504	1	4738	4738		87.696	5.4559	1	644140			56053	2940	46283	46323	61208	61208					-0.02937233529655714
TDREDINSL	9	Unmodified	_TDREDINSL_					0	0	0		ENST00000507004.1_1_5:43298575-43313480:-|nuORF;ENST00000507293.1_1_5:43298575-43313499:-|nuORF;ENSG00000112972|ENST00000325110|HMGCS1	ENST00000507004.1_1_5:43298575-43313480:-|nuORF	ENST00000507004.1_1_5:43298575-43313480:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	531.756735	1061.49892	-0.39598	-0.00021057	1.2316	0.00065493	0.83566	0.00044437	531.7569875067043	65.028	1.3381	62.304	61.705	63.043	-2.7245	0.12283	-0.00021679	NaN	87.696	51	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101540			56054	2940	46283	46323							-0.02937233529655714
TDRIDINAP	9	Unmodified	_TDRIDINAP_					0	0	0			REV__nc|ENSG00000198522|Q9HCN4-4|GPN1	REV__nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.8094177246094	2	507.764363	1013.51417	-1.0569	-0.00053665	-2.0708	-0.0010515	-3.1277	-0.0015881	507.76315121013977	99.769	1.0409	98.939	98.617	99.658	-0.83051					45	20	3	0	0	0	0.027176	1	9081	9081		76.774	15.083	1	173550	+		56055	23024	46284	46324	61209	61209					0.007956780581821477
TDRIDINAP	9	Unmodified	_TDRIDINAP_					0	0	0			REV__nc|ENSG00000198522|Q9HCN4-4|GPN1	REV__nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.8102722167969	2	507.764363	1013.51417	-0.95333	-0.00048406	-4.2434	-0.0021546	-5.1967	-0.0026387	507.7622227637067	101.25	1.2758	98.983	98.7	99.976	-2.2665					42	25	3	0	0	0	0.027232	1	9080	9080		76.774	0	1	211180	+		56056	23024	46284	46324	61210	61210					0.007956780581821477
TDRKSVSI	8	Unmodified	_TDRKSVSI_					0	0	0			REV__ENSG00000018625|ENST00000361216|ATP1A2	REV__ENSG00000018625|ENST00000361216|ATP1A2	MULTI-MSMS	OvCa9_classI_Rep2	2	453.2562255859375	2	453.256174	904.497795	0.87584	0.00039698	-0.9165	-0.00041541	-0.040654	-1.8427E-05	453.2556671396332	49.258	2.2776	46.498	46.078	48.356	-2.7603					121	45	5	0	0	0	0.66057	1	3101	3101		51.335	0	1	1197000	+		56057	16532	46285	46325	61211	61211					0.0417259689210141
TDRNADPLL	9	Unmodified	_TDRNADPLL_					0	0	0			REV__nc|ENSG00000146376|Q8N392-2|ARHGAP18	REV__nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7633361816406	2	507.764363	1013.51417	-1.5159	-0.00076971	-1.137	-0.00057732	-2.6529	-0.001347	507.7636935220244	117.29	3.8609	117.16	116.12	119.98	-0.12869					148	77	2	0	0	0	0.51865	1	11269	11269		40.778	0	1	83506	+		56058	20011	46286	46326	61212	61212					0.007956780581821477
TDRVMTVSF	9	Unmodified	_TDRVMTVSF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000523334.1_1_6:114270238-114277280:-|nuORF;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2;ENST00000469550.6_1_5:141001037-141014565:-|nuORF;ENSG00000171720|ENST00000305264|HDAC3;nc|ENSG00000171720|O15379-2|HDAC3	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;ENST00000469550.6_1_5:141001037-141014565:-|nuORF	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.2649536132812	2	528.263142	1054.51173	-1.14	-0.00060221	-0.021932	-1.1586E-05	-1.1619	-0.0006138	528.2630309163856	94.704	1.4476	92.235	91.714	93.161	-2.4685					48	28	2	0	0	0	0.22621	1	8309	8309		71.877	10.906	1	240580			56059	3180;8632;7227	46287	46327	61213	61213					-0.013344936711064292
TDRVMTVSF	9	Unmodified	_TDRVMTVSF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000523334.1_1_6:114270238-114277280:-|nuORF;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2;ENST00000469550.6_1_5:141001037-141014565:-|nuORF;ENSG00000171720|ENST00000305264|HDAC3;nc|ENSG00000171720|O15379-2|HDAC3	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;ENST00000469550.6_1_5:141001037-141014565:-|nuORF	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	528.263142	1054.51173	-0.49417	-0.00026105	-0.036542	-1.9304E-05	-0.53071	-0.00028035	528.2629554460505	93.414	1.4866	92.246	91.855	93.342	-1.168	0.024484	-0.00046881	NaN	71.877	66	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130910			56060	3180;8632;7227	46287	46327							-0.013344936711064292
TDRVMTVSF	9	Unmodified	_TDRVMTVSF_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000523334.1_1_6:114270238-114277280:-|nuORF;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2;ENST00000469550.6_1_5:141001037-141014565:-|nuORF;ENSG00000171720|ENST00000305264|HDAC3;nc|ENSG00000171720|O15379-2|HDAC3	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2;ENST00000469550.6_1_5:141001037-141014565:-|nuORF	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	528.263142	1054.51173	-1.1588	-0.00061217	0.92952	0.00049103	-0.22931	-0.00012114	528.2636207523437	94.079	1.6684	92.183	91.643	93.311	-1.8956	-0.038354	0.00055186	NaN	71.877	71	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226080			56061	3180;8632;7227	46287	46327							-0.013344936711064292
TDRYDWLSL	9	Unmodified	_TDRYDWLSL_					0	0	0			REV__chr18:12714027-12718517|135|13.47|0.38|5.17|+|0|TE_info:AluSz6,AluSz6_dup42130,Alu,SINE,donor,-,12713760,12714027|None,PSMG2|2	REV__chr18:12714027-12718517|135|13.47|0.38|5.17|+|0|TE_info:AluSz6,AluSz6_dup42130,Alu,SINE,donor,-,12713760,12714027|None,PSMG2|2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	585.2423706054688	2	584.785296	1167.55604	-0.37101	-0.00021696	-3.3345	-0.00195	-3.7055	-0.002167	584.7831329148178	60.952	0.49962	57.522	57.294	57.794	-3.43					17	9	3	0	0	0	0.027462	1	4184	4184		27.882	0	1	21957	+		56062	15956	46288	46328	61214	61214					-0.021037662532762624
TDSLPHSPPLL	11	Unmodified	_TDSLPHSPPLL_					0	0	0		chr19:3053335-3053458|159|106.97|0.0|23.35|-|0|None,TLE5|2	chr19:3053335-3053458|159|106.97|0.0|23.35|-|0|None,TLE5|2	chr19:3053335-3053458|159|106.97|0.0|23.35|-|0|None,TLE5|2	MULTI-MSMS	OvCa9_classI_Rep3	3	588.8162841796875	2	588.816596	1175.61864	-0.63539	-0.00037413	0.48748	0.00028704	-0.1479	-8.7089E-05	588.8167831837943	129.05	0.98856	127.95	127.56	128.55	-1.1011					50	19	4	0	0	0	0.62497	1	10201	10201		42.396	9.6456	1	135200			56063	410	46289	46329	61215	61215					0.03785379814917178
TDSLVLAR	8	Unmodified	_TDSLVLAR_					0	0	0			REV__ENST00000497693.1_1_9:37436762-37436891:+|nuORF	REV__ENST00000497693.1_1_9:37436762-37436891:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	437.7530517578125	2	437.753267	873.491981	0.52139	0.00022824	-0.40228	-0.0001761	0.11911	5.2142E-05	437.7529908950437	38.95	0.75801	38.95	38.705	39.463	0					31	16	3	0	0	0	0.7224	1	2258	2258		38.806	1.647	1	443570	+		56064	26783	46290	46330	61216	61216					0.050174983804254225
TDSSAADLE	9	Unmodified	_TDSSAADLE_					0	0	0		ENST00000392885.2_1_7:148334397-148334490:+|nuORF	ENST00000392885.2_1_7:148334397-148334490:+|nuORF	ENST00000392885.2_1_7:148334397-148334490:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	454.69635009765625	2	454.695812	907.377071	1.5727	0.00071512	-2.2679	-0.0010312	-0.69515	-0.00031608	454.69465985565694	123.2	0.87817	123.2	122.95	123.83	0					37	18	3	0	0	0	0.48324	1	14183	14183		44.117	3.5442	1	363690			56065	11236	46291	46331	61217	61217					-0.0803227561203812
TDTMLCAGFM	10	Unmodified	_TDTMLCAGFM_					0	0	0		ENSG00000185873|ENST00000332644|TMPRSS11B	ENSG00000185873|ENST00000332644|TMPRSS11B	ENSG00000185873|ENST00000332644|TMPRSS11B	MULTI-MSMS	OvCa99_classI_Rep5	1	545.22607421875	2	545.224313	1088.43407	0.63748	0.00034757	1.7689	0.00096442	2.4063	0.001312	545.225137729692	140.44	0.95975	140.44	140.02	140.98	0					39	19	3	0	0	0	0.50656	1	16402	16402		53.351	6.585	1	413420			56066	8293	46292	46332	61218	61218					-0.1066059092318028
TDTWKKEFYKR	11	Unmodified	_TDTWKKEFYKR_					0	0	0			REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	REV__nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.7601318359375	3	501.264781	1500.77251	-1.181	-0.00059201	4.1616	0.002086	2.9805	0.001494	501.267143366805	69.904	1.1214	66.422	65.96	67.081	-3.4812					47	22	3	0	0	0	0.025908	1	5282	5282		21.78	12.569	1	126130	+		56067	18651	46293	46333	61219	61219					0.04215789580393903
TDVDMRIVK	9	Unmodified	_TDVDMRIVK_					0	0	0			REV__tr|A0A553SP83|A0A553SP83_NIACIPrimosomalproteinN'OS=NialliacirculansOX=1397GN=priAPE=3SV=1	REV__tr|A0A553SP83|A0A553SP83_NIACIPrimosomalproteinN'OS=NialliacirculansOX=1397GN=priAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.8070678710938	2	538.792066	1075.56958	-0.42232	-0.00022754	-3.0213	-0.0016279	-3.4436	-0.0018554	538.7904787869267	55.576	0.44553	55.576	55.358	55.804	0					16	10	2	0	0	0	0.027461	1	4555	4555		40.778	21.675	1	158010	+		56068	30510	46294	46334	61220	61220					0.03481768254300732
TDVHQGYWPE	10	Unmodified	_TDVHQGYWPE_					0	0	0		L1P3_dup682|chr3:196908842-196910335:+|1.1693758815815145|0.2885488685750818|2.02|428.0|68|2|anti-sense	L1P3_dup682|chr3:196908842-196910335:+|1.1693758815815145|0.2885488685750818|2.02|428.0|68|2|anti-sense	L1P3_dup682|chr3:196908842-196910335:+|1.1693758815815145|0.2885488685750818|2.02|428.0|68|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	617.0078735351562	2	616.272552	1230.53055	1.8668	0.0011505	-3.909	-0.002409	-2.0422	-0.0012585	616.2699036416532	128.5	0.46927	128.5	128.32	128.79	0					13	9	2	0	0	0	0.026867	1	14868	14868		35.152	0	1	59670			56069	14644	46295	46335	61221	61221					-0.07549240775688304
TDVKPRTF	8	Unmodified	_TDVKPRTF_					0	0	0		tr|A0A553SF79|A0A553SF79_NIACIGalactokinaseOS=NialliacirculansOX=1397GN=galKPE=3SV=1	tr|A0A553SF79|A0A553SF79_NIACIGalactokinaseOS=NialliacirculansOX=1397GN=galKPE=3SV=1	tr|A0A553SF79|A0A553SF79_NIACIGalactokinaseOS=NialliacirculansOX=1397GN=galKPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	481.2828674316406	2	482.266542	962.51853	-0.80352	-0.00038751	0.84835	0.00040913	0.044827	2.1618E-05	482.26683044066414	75.481	2.445	73.627	72.231	74.676	-1.854					100	46	3	0	0	0	0.028476	1	6157	6157		55.504	7.5886	1	282650			56070	33004	46296	46336	61222	61222					0.03577187271764615
TDVKYIRL	8	Unmodified	_TDVKYIRL_					0	0	0			REV__ENST00000500268.6_1_4:10455867-10456122:-|nuORF	REV__ENST00000500268.6_1_4:10455867-10456122:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	504.2987365722656	2	504.297842	1006.58113	-0.082287	-4.1497E-05	-0.36053	-0.00018182	-0.44282	-0.00022331	504.2976378271559	104.41	3.9037	102.97	102.5	106.4	-1.4347					184	75	5	0	0	0	0.59148	1	7285	7285		65.803	17.888	1	927760	+		56071	26811	46297	46337	61223	61223					0.0781033333993264
TDVLLVVIV	9	Unmodified	_TDVLLVVIV_					0	0	0			REV__ENSG00000161996|ENST00000293879|WDR90	REV__ENSG00000161996|ENST00000293879|WDR90	MULTI-MSMS	OvCa99_classI_Rep5	1	485.81317138671875	2	485.812793	969.611034	1.4031	0.00068165	0.38188	0.00018552	1.785	0.00086717	485.8128285577155	147.57	4.5874	147.57	147.11	151.7	0					195	92	4	0	0	0	0.44294	1	17457	17457		47.916	5.5195	1	1725900	+		56072	20716	46298	46338	61224	61224					0.12501272285294363
TDVRPSLI	8	Unmodified	_TDVRPSLI_					0	0	0			REV__ENST00000489686.5_2_2:61385056-61385122:+|nuORF	REV__ENST00000489686.5_2_2:61385056-61385122:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	450.7622375488281	2	450.761092	899.507631	-0.084137	-3.7926E-05	0.28663	0.0001292	0.20249	9.1274E-05	450.76104374223536	53.824	1.4162	53.824	53.564	54.98	0					72	33	4	0	0	0	0.64026	1	4290	4290		55.504	5.4797	1	4210900	+		56073	26645	46299	46339	61225	61225					0.05385784897487156
TDVTLCTTMVP	11	Carbamidomethyl (C),Oxidation (M)	_TDVTLC(Carbamidomethyl (C))TTM(Oxidation (M))VP_	TDVTLC(1)TTMVP	TDVTLCTTM(1)VP	TDVTLC(46)TTMVP	TDVTLCTTM(46)VP	0	1	1		ENSG00000180988|ENST00000317037|OR52N2	ENSG00000180988|ENST00000317037|OR52N2	ENSG00000180988|ENST00000317037|OR52N2	MULTI-MSMS	OvCa99_classI_Rep5	1	627.2923583984375	2	627.291239	1252.56792	2.701	0.0016943	-0.53897	-0.00033809	2.162	0.0013562	627.2907955602681	116.16	0.91087	116.16	115.77	116.68	0					54	19	3	0	0	0	0.58572	1	13264	13264		45.972	8.1607	1	3470600			56074	7907	46300	46340	61226	61226	77	242			-0.048256536166263686
TDYDHDSAE	9	Unmodified	_TDYDHDSAE_					0	0	0		ENSG00000142408|ENST00000270458|CACNG8	ENSG00000142408|ENST00000270458|CACNG8	ENSG00000142408|ENST00000270458|CACNG8	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.7922973632812	2	526.6938	1051.37305	-0.99632	-0.00052475	-2.5912	-0.0013648	-3.5875	-0.0018895	526.691953776796	66.156	0.11598	66.156	66.096	66.212	0					4	2	2	0	0	0	0.027462	1	6118	6118		16.473	9.7376	1	250780			56075	4970	46301	46341	61227	61227					-0.1505836510575591
TDYRPGLDTV	10	Unmodified	_TDYRPGLDTV_					0	0	0		PLXNA2|p.A1834Efs*28|1|0.04|ENSG00000076356|chr1:208028099-208028100|-/CTGCCGCCGTGCCTGCTCATCCTGCTCT|frameshift_variant;ENSG00000076356|ENST00000367033|PLXNA2	PLXNA2|p.A1834Efs*28|1|0.04|ENSG00000076356|chr1:208028099-208028100|-/CTGCCGCCGTGCCTGCTCATCCTGCTCT|frameshift_variant	PLXNA2|p.A1834Efs*28|1|0.04|ENSG00000076356|chr1:208028099-208028100|-/CTGCCGCCGTGCCTGCTCATCCTGCTCT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.7789306640625	2	568.782753	1135.55095	2.3511	0.0013373	-0.1315	-7.4797E-05	2.2196	0.0012625	568.7825218459683	84.854	0.41565	84.854	84.631	85.046	0					13	9	2	0	0	0	0.026931	1	8876	8876		23.523	0	1	214020			56076	1556	46302	46342	61228	61228					-0.011400701159345772
TDYRPGLDTV	10	Unmodified	_TDYRPGLDTV_					0	0	0		PLXNA2|p.A1834Efs*28|1|0.04|ENSG00000076356|chr1:208028099-208028100|-/CTGCCGCCGTGCCTGCTCATCCTGCTCT|frameshift_variant;ENSG00000076356|ENST00000367033|PLXNA2	PLXNA2|p.A1834Efs*28|1|0.04|ENSG00000076356|chr1:208028099-208028100|-/CTGCCGCCGTGCCTGCTCATCCTGCTCT|frameshift_variant	PLXNA2|p.A1834Efs*28|1|0.04|ENSG00000076356|chr1:208028099-208028100|-/CTGCCGCCGTGCCTGCTCATCCTGCTCT|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	568.782753	1135.55095	-0.37875	-0.00021542	-0.80312	-0.0004568	-1.1819	-0.00067223	568.7828094896079	86.622	0.42505	85.179	84.897	85.322	-1.4432	0.1622	-0.00056485	NaN	17.468	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6109.9			56077	1556	46302	46342							-0.011400701159345772
TEAAHPIRL	9	Unmodified	_TEAAHPIRL_					0	0	0		PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant;PRPF8|p.Q2065Hfs*8|1|0.04|ENSG00000174231|chr17:1653809-1653810|-/G|frameshift_variant;ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.Q1835Afs*4|1|0.07|ENSG00000174231|chr17:1658255-1658256|-/C|frameshift_variant;PRPF8|p.F1684Dfs*30|1|0.07|ENSG00000174231|chr17:1659445-1659446|-/AAGTCAGGAGATCGAGACCATC|frameshift_variant	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	504.28521728515625	2	504.285266	1006.55598	-0.19531	-9.8494E-05	-0.051539	-2.599E-05	-0.24685	-0.00012448	504.28513216837877	51.396	0.91768	51.396	51.078	51.995	0					60	21	4	0	0	0	0.24951	1	3954	3954		68.787	10.005	1	6318300			56078	7449	46303	46343	61229	61229					0.052962785373551924
TEAALRLLS	9	Unmodified	_TEAALRLLS_					0	0	0		ENSG00000163283|ENST00000392027|ALPP;ENSG00000163295|ENST00000295463|ALPI	ENSG00000163283|ENST00000392027|ALPP	ENSG00000163283|ENST00000392027|ALPP	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.2702331542969	2	487.287474	972.560395	2.1036	0.0010251	-1.1537	-0.00056216	0.94995	0.0004629	487.28682798693353	84.916	0.45485	84.916	84.672	85.127	0					18	10	2	0	0	0	0.027446	1	8886	8886		60.118	20.865	1	291790			56079	6283	46304	46344	61230	61230					0.0730174296027144
TEAAPSIIVN	10	Unmodified	_TEAAPSIIVN_					0	0	0		ENST00000484400.5_1_10:129046280-129142589:+|nuORF	ENST00000484400.5_1_10:129046280-129142589:+|nuORF	ENST00000484400.5_1_10:129046280-129142589:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.8415222167969	2	507.776939	1013.53933	0.46798	0.00023763	-2.7449	-0.0013938	-2.2769	-0.0011562	507.7756111947723	111.06	1.8775	109.96	108.97	110.84	-1.1038					78	36	3	0	0	0	0.026734	1	8004	8004		31.53	0	1	35756			56080	12600	46305	46345	61231	61231					0.033097328607595955
TEADIFHQAL	10	Unmodified	_TEADIFHQAL_					0	0	0		ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	MULTI-MSMS	OvCa9_classI_Rep2	2	572.78564453125	2	572.785296	1143.55604	-1.9865	-0.0011378	1.1956	0.0006848	-0.79095	-0.00045304	572.7859809262638	102.03	3.5096	101.27	100.67	104.18	-0.76401					164	70	5	0	0	0	0.36605	1	9377	9377		72.879	16.158	1	1099900			56081	5345	46306	46346	61232	61232					-0.009997662532896356
TEADIFHQAL	10	Unmodified	_TEADIFHQAL_					0	0	0		ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	MULTI-MSMS	OvCa9_classI_Rep3	3	572.7861328125	2	572.785296	1143.55604	-0.72166	-0.00041335	0.096967	5.5542E-05	-0.62469	-0.00035781	572.7852042394844	102.79	2.8693	101.27	100.58	103.45	-1.5211					127	54	3	0	0	0	0.52439	1	7109	7109		51.193	0	1	1330700			56082	5345	46306	46346	61233	61233					-0.009997662532896356
TEAEIDAHL	9	Unmodified	_TEAEIDAHL_					0	0	0		nc|ENSG00000100902|P60900-2|PSMA6;ENSG00000100902|ENST00000261479|PSMA6;ENST00000554457.1_1_14:35786443-35786509:+|nuORF;nc|ENSG00000100902|P60900-3|PSMA6;ENST00000400275.2_1_Y:15398697-15399255:+|nuORF	nc|ENSG00000100902|P60900-2|PSMA6	nc|ENSG00000100902|P60900-2|PSMA6	MULTI-MSMS	OvCa99_classI_Rep5	1	499.7441101074219	2	499.743096	997.47164	0.25735	0.00012861	0.14818	7.405E-05	0.40552	0.00020266	499.7430428810447	73.883	1.2812	73.883	73.56	74.841	0					75	32	4	0	0	0	0.0075498	2	7256	7256;7283		211.23	99.584	1	8744300			56083	2119	46307	46347	61234;61235	61234					-0.027197170700674178
TEAEIDIRL	9	Unmodified	_TEAEIDIRL_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2;ENST00000546751.1_1_12:62974148-62979324:+|nuORF;nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	530.2883911132812	2	530.287671	1058.56079	1.7914	0.00094997	1.9668	0.001043	3.7582	0.0019929	530.2880543698992	101.14	1.0447	101.14	100.69	101.73	0					94	24	6	0	0	0	0.070405	2	11252	11224;11252		107.01	13.001	1	5826500			56084	13545	46308	46348	61236;61237	61237					0.03385117889456524
TEAEIDIRL	9	Unmodified	_TEAEIDIRL_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2;ENST00000546751.1_1_12:62974148-62979324:+|nuORF;nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	530.7883911132812	2	530.287671	1058.56079	1.3712	0.00072712	-1.0232	-0.00054262	0.34794	0.00018451	530.7881858440231	102.05	0.42656	102.05	101.87	102.29	0					13	9	2	0	0	0	0.40818	1	11371	11371		51.193	4.7359	1	1479100			56085	13545	46308	46348	61238	61238					0.03385117889456524
TEAEIDIRL	9	Unmodified	_TEAEIDIRL_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2;ENST00000546751.1_1_12:62974148-62979324:+|nuORF;nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.287671	1058.56079	-1.8552	-0.0009838	2.8536	0.0015133	0.99843	0.00052945	530.2897615704187	101.68	1.2876	100.92	100.42	101.71	-0.76401	-0.18051	0.00049149	NaN	107.01	39	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17627			56086	13545	46308	46348							0.03385117889456524
TEAEIDIRL	9	Unmodified	_TEAEIDIRL_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2;ENST00000546751.1_1_12:62974148-62979324:+|nuORF;nc|ENSG00000061987|Q7Z3U7-3|MON2;ENST00000551307.5_1_12:62954224-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	530.287671	1058.56079	-1.2553	-0.00066567	5.1693	0.0027412	3.914	0.0020755	530.2915865213351	103.43	0.78159	101.24	100.9	101.68	-2.1861	0.1434	0.0029474	NaN	107.01	27	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23248			56087	13545	46308	46348							0.03385117889456524
TEAERTAPI	9	Unmodified	_TEAERTAPI_					0	0	0			REV__AluSx_dup38132|chr6:73497155-73497453:-|2.371705552755625|0.0109539542227329|7.76|336.0|8|2|sense	REV__AluSx_dup38132|chr6:73497155-73497453:-|2.371705552755625|0.0109539542227329|7.76|336.0|8|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2214660644531	2	494.258914	986.503274	-0.30504	-0.00015077	-1.0906	-0.00053906	-1.3957	-0.00068982	494.25986770239297	35.638	0.18701	35.638	35.52	35.707	0					5	3	2	0	0	0	0.02741	1	1818	1818		60.972	10.947	1	14022	+		56088	15609	46309	46349	61239	61239					0.009482756838906425
TEAERTAPI	9	Unmodified	_TEAERTAPI_					0	0	0			REV__AluSx_dup38132|chr6:73497155-73497453:-|2.371705552755625|0.0109539542227329|7.76|336.0|8|2|sense	REV__AluSx_dup38132|chr6:73497155-73497453:-|2.371705552755625|0.0109539542227329|7.76|336.0|8|2|sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	494.258914	986.503274	-1.0334	-0.00051074	1.192	0.00058917	0.15868	7.843E-05	494.2594275596725	38.546	0.34575	35.836	35.667	36.013	-2.7097	0.22302	0.001515	NaN	60.972	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13293	+		56089	15609	46309	46349							0.009482756838906425
TEAERTAPI	9	Unmodified	_TEAERTAPI_					0	0	0			REV__AluSx_dup38132|chr6:73497155-73497453:-|2.371705552755625|0.0109539542227329|7.76|336.0|8|2|sense	REV__AluSx_dup38132|chr6:73497155-73497453:-|2.371705552755625|0.0109539542227329|7.76|336.0|8|2|sense	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	494.258914	986.503274	0.52729	0.00026062	-1.111	-0.0005491	-0.58367	-0.00028848	494.25856157999806	38.292	0.79168	35.365	35.156	35.948	-2.9264	-0.2476	-0.00076153	NaN	60.972	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28968	+		56090	15609	46309	46349							0.009482756838906425
TEAETIQKL	9	Unmodified	_TEAETIQKL_					0	0	0		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1;USO1|p.L895Hfs*10|1|0.25|ENSG00000138768|chr4:75812257-75812258|-/GCAT|frameshift_variant;USO1|p.L895Hfs*11|1|0.25|ENSG00000138768|chr4:75812259-75812260|-/ATATGCA|frameshift_variant	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.7825927734375	2	516.782222	1031.54989	0.052279	2.7017E-05	-0.69125	-0.00035722	-0.63897	-0.00033021	516.781642791409	63.226	1.5904	63.226	62.501	64.091	0					58	39	2	0	0	0	0.049969	1	5676	5676		118.74	17.142	1	2449200			56091	4726	46310	46350	61240	61240					0.035377155151991246
TEAETIQKL	9	Unmodified	_TEAETIQKL_					0	0	0		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1;USO1|p.L895Hfs*10|1|0.25|ENSG00000138768|chr4:75812257-75812258|-/GCAT|frameshift_variant;USO1|p.L895Hfs*11|1|0.25|ENSG00000138768|chr4:75812259-75812260|-/ATATGCA|frameshift_variant	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	516.782222	1031.54989	1.1625	0.00060074	-0.99071	-0.00051198	0.17175	8.8756E-05	516.7817485659288	65.99	0.79359	63.294	62.972	63.766	-2.6958	0.077123	-0.00055498	NaN	118.74	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72474			56092	4726	46310	46350							0.035377155151991246
TEAETIQKL	9	Unmodified	_TEAETIQKL_					0	0	0		ENSG00000138768|ENST00000514213|USO1;nc|ENSG00000138768|O60763-2|USO1;USO1|p.L895Hfs*10|1|0.25|ENSG00000138768|chr4:75812257-75812258|-/GCAT|frameshift_variant;USO1|p.L895Hfs*11|1|0.25|ENSG00000138768|chr4:75812259-75812260|-/ATATGCA|frameshift_variant	ENSG00000138768|ENST00000514213|USO1	ENSG00000138768|ENST00000514213|USO1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	516.782222	1031.54989	-0.31443	-0.00016249	0.044155	2.2818E-05	-0.27028	-0.00013968	516.7822692545614	66.621	1.5768	63.131	62.805	64.381	-3.4902	-0.0863	0.00051462	NaN	118.74	68	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	340280			56093	4726	46310	46350							0.035377155151991246
TEAGFGRVNI	10	Unmodified	_TEAGFGRVNI_					0	0	0			REV__L1P3_dup682|chr3:196908842-196910335:+|1.1693758815815145|0.2885488685750818|2.02|428.0|63|2|anti-sense	REV__L1P3_dup682|chr3:196908842-196910335:+|1.1693758815815145|0.2885488685750818|2.02|428.0|63|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	531.8135986328125	2	532.28018	1062.54581	1.737	0.00092457	0.42976	0.00022875	2.1668	0.0011533	532.2802497621005	112.91	0.24567	111.83	111.76	112.01	-1.0753					5	4	2	0	0	0	0.026635	1	8266	8266		47.657	6.8792	1	10332	+		56094	28457	46311	46351	61241	61241					0.01703670812139535
TEAHGLARL	9	Unmodified	_TEAHGLARL_					0	0	0		ENSG00000123989|ENST00000243776|CHPF;nc|ENSG00000123989|Q8IZ52-4|CHPF	ENSG00000123989|ENST00000243776|CHPF	ENSG00000123989|ENST00000243776|CHPF	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.2705078125	2	484.269616	966.524678	-0.66716	-0.00032309	0.78795	0.00038158	0.12079	5.8495E-05	484.26986850767986	52.835	1.0559	49.627	49.298	50.354	-3.208					38	20	2	0	0	0	0.44568	1	3185	3185		47.657	8.4045	1	331080			56095	3619	46312	46352	61242	61242					0.04007705503283887
TEAKLKKLQ	9	Unmodified	_TEAKLKKLQ_					0	0	0			REV__nc|ENSG00000168671|Q3SY77-2|UGT3A2	REV__nc|ENSG00000168671|Q3SY77-2|UGT3A2	MULTI-MSMS	OvCa99_classI_Rep5	1	529.828857421875	2	529.832049	1057.64954	0.025014	1.3253E-05	-0.25462	-0.00013491	-0.22961	-0.00012165	529.8317923143164	32.328	0.74228	32.328	32.006	32.748	0					32	14	4	0	0	0	0.3249	1	1394	1394		60.118	8.9256	1	329280	+		56096	21391	46313	46353	61243	61243					0.12302577919808755
TEAQDNLNHA	10	Unmodified	_TEAQDNLNHA_					0	0	0			REV__tr|A0A7D7A3G6|A0A7D7A3G6_9CLOTtRNA(Ile)-lysidinesynthaseOS=ClostridiumintestinaleOX=36845GN=tilSPE=3SV=1	REV__tr|A0A7D7A3G6|A0A7D7A3G6_9CLOTtRNA(Ile)-lysidinesynthaseOS=ClostridiumintestinaleOX=36845GN=tilSPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.8787231445312	2	556.751984	1111.48942	-0.46962	-0.00026146	-1.8021	-0.0010033	-2.2718	-0.0012648	556.7508315994116	37.503	0.64271	37.503	37.298	37.94	0					22	13	3	0	0	0	0.026849	1	2107	2107		25.574	1.3713	1	102490	+		56097	32584	46314	46354	61244	61244					-0.06187001815169424
TEARFGAQL	9	Unmodified	_TEARFGAQL_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19	CON__P08727	CON__P08727	MULTI-MSMS	OvCa99_classI_Rep5	1	496.7630920410156	2	496.761623	991.508694	-0.039263	-1.9504E-05	-0.27136	-0.0001348	-0.31062	-0.00015431	496.76153111404733	70.661	1.6289	70.661	70.328	71.956	0					104	40	4	0	0	0	0.021573	3	6773	6773;6802;6833		145.16	56.513	1	26152000		+	56098	625	46315	46355	61245;61246;61247	61245					0.012599992663922421
TEARFGAQL	9	Unmodified	_TEARFGAQL_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19	CON__P08727	CON__P08727	MULTI-MSMS	OvCa9_classI_Rep2	2	496.7608947753906	2	496.761623	991.508694	-0.034861	-1.7318E-05	-0.89206	-0.00044314	-0.92693	-0.00046046	496.7612038781355	72.995	4.3276	70.595	69.854	74.182	-2.3999					239	82	5	0	0	0	0.010478	25	5949	5889;5895;5901;5907;5913;5919;5925;5931;5937;5943;5949;5955;5961;5967;5973;5979;5985;5991;5998;6005;6012;6018;6024;6031;6037		167.23	82.313	1	7361700		+	56099	625	46315	46355	61248;61249;61250;61251;61252;61253;61254;61255;61256;61257;61258;61259;61260;61261;61262;61263;61264;61265;61266;61267;61268;61269;61270;61271;61272	61258					0.012599992663922421
TEARFGAQL	9	Unmodified	_TEARFGAQL_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19	CON__P08727	CON__P08727	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.7629089355469	2	496.761623	991.508694	-0.5849	-0.00029055	-0.86416	-0.00042928	-1.4491	-0.00071984	496.7612985738551	74.024	4.1217	70.793	70.434	74.556	-3.2308					279	85	6	0	0	0	0.013371	18	5803	5744;5755;5767;5779;5791;5803;5815;5827;5839;5851;5863;5875;5887;5899;5912;5926;5951;6005		158.07	66.682	1	24174000		+	56100	625	46315	46355	61273;61274;61275;61276;61277;61278;61279;61280;61281;61282;61283;61284;61285;61286;61287;61288;61289;61290	61278					0.012599992663922421
TEARFGAQL	9	Unmodified	_TEARFGAQL_					0	0	0		CON__P08727;ENSG00000171345|ENST00000361566|KRT19	CON__P08727	CON__P08727	MULTI-MATCH	OvCa9_classI_Rep3	3		2	496.761623	991.508694	-0.24005	-0.00011925	-0.05116	-2.5414E-05	-0.29121	-0.00014466	496.76146035544207	73.074	2.0312	70.587	70.232	72.264	-2.4873	-0.071771	0.00046815	NaN	167.23	90	40	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112640		+	56101	625	46315	46355							0.012599992663922421
TEARFLHTEI	10	Unmodified	_TEARFLHTEI_					0	0	0			REV__ENSG00000172164|ENST00000517992|SNTB1	REV__ENSG00000172164|ENST00000517992|SNTB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	406.2044372558594	3	406.215539	1215.62479	0.41161	0.0001672	2.9112	0.0011826	3.3228	0.0013498	406.21641358119774	26.755	0.64932	26.755	26.292	26.942	0					21	12	2	0	0	0	0.027174	1	720	720		10.104	3.783	1	26476	+		56102	21678	46316	46356	61291	61291					0.025598980464110355
TEARLRLL	8	Unmodified	_TEARLRLL_					0	0	0		nc|ENSG00000172508|A5YM72-4|CARNS1;ENSG00000172508|ENST00000687366|CARNS1;nc|ENSG00000172508|A5YM72-3|CARNS1;nc|ENSG00000172508|A5YM72|CARNS1;nc|ENSG00000172508|A5YM72-2|CARNS1	nc|ENSG00000172508|A5YM72-4|CARNS1	nc|ENSG00000172508|A5YM72-4|CARNS1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.3048095703125	2	486.303458	970.592364	0.78572	0.0003821	2.8872	0.0014041	3.673	0.0017862	486.30477333878326	121.54	2.2543	120.51	120.01	122.27	-1.0286					108	42	4	0	0	0	0.73205	1	9295	9295		35.618	0	1	892460			56103	7302	46317	46357	61292	61292					0.10589155434081476
TEARMVSIS	9	Unmodified	_TEARMVSIS_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.2548522949219	2	497.255317	992.49608	-0.32498	-0.0001616	-3.0909	-0.001537	-3.4159	-0.0016986	497.25375497628926	77.521	2.2937	74.705	74.391	76.685	-2.8165					83	47	2	0	0	0	0.14998	1	6201	6201		84.916	4.4609	1	1652300	+		56104	17095	46318	46358	61293	61293					-0.00046780188165485015
TEATVAITSI	10	Unmodified	_TEATVAITSI_					0	0	0		tr|A0A553SRI3|A0A553SRI3_NIACID-alanine--D-alanylcarrierproteinligaseOS=NialliacirculansOX=1397GN=dltAPE=3SV=1	tr|A0A553SRI3|A0A553SRI3_NIACID-alanine--D-alanylcarrierproteinligaseOS=NialliacirculansOX=1397GN=dltAPE=3SV=1	tr|A0A553SRI3|A0A553SRI3_NIACID-alanine--D-alanylcarrierproteinligaseOS=NialliacirculansOX=1397GN=dltAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.2767028808594	2	503.276772	1004.53899	0.10902	5.4868E-05	-0.08509	-4.2824E-05	0.023931	1.2044E-05	503.27665317528556	84.071	2.3968	81.408	80.779	83.176	-2.6629					139	49	4	0	0	0	0.33376	1	7107	7107		76.774	7.1465	1	3611400			56105	34266	46319	46359	61294	61294					0.036903131409076195
TEAVEDLTTTL	11	Unmodified	_TEAVEDLTTTL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;ENST00000486788.2_1_9:35704327-35706084:-|nuORF	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OvCa99_classI_Rep5	1	596.8025512695312	2	596.800808	1191.58706	2.7136	0.0016195	-0.33637	-0.00020074	2.3772	0.0014187	596.8005060513018	115.75	1.198	115.75	115.44	116.64	0					46	25	3	0	0	0	0.060583	2	13220	13220;13246		129.42	59.794	1	1321100			56106	4552	46320	46360	61295;61296	61295					-0.0010665772972515697
TEAVISKLL	9	Unmodified	_TEAVISKLL_					0	0	0		tr|A0A553SSE1|A0A553SSE1_NIACIPTSsystemmannose-specificEIIABcomponentOS=NialliacirculansOX=1397GN=CEQ21_02855PE=4SV=1	tr|A0A553SSE1|A0A553SSE1_NIACIPTSsystemmannose-specificEIIABcomponentOS=NialliacirculansOX=1397GN=CEQ21_02855PE=4SV=1	tr|A0A553SSE1|A0A553SSE1_NIACIPTSsystemmannose-specificEIIABcomponentOS=NialliacirculansOX=1397GN=CEQ21_02855PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.2702331542969	2	487.30005	972.585547	2.0545	0.0010012	-0.21886	-0.00010665	1.8356	0.0008945	487.2998134736555	85.006	0.5762	85.006	84.716	85.292	0					32	13	3	0	0	0	0.027426	1	8886	8886		56.721	14.325	1	1635400			56107	34364	46321	46361	61297	61297					0.09815797762848888
TEAVVKEKL	9	Unmodified	_TEAVVKEKL_					0	0	0		ENSG00000115306|ENST00000356805|SPTBN1;nc|ENSG00000115306|Q01082-3|SPTBN1;nc|ENSG00000115306|Q01082-2|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	ENSG00000115306|ENST00000356805|SPTBN1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.80267333984375	2	508.802957	1015.59136	-8.917E-05	-4.537E-08	-0.88789	-0.00045176	-0.88798	-0.00045181	508.80250870303985	46.786	1.3524	46.786	46.545	47.897	0					70	30	3	0	0	0	0.24899	2	3342	3342;3368		68.846	3.4536	1	4492300			56108	3083	46322	46362	61298;61299	61298					0.08418896274520193
TEAWLQEKL	9	Unmodified	_TEAWLQEKL_					0	0	0		ENSG00000130755|ENST00000597595|GMFG;ENST00000601731.1_1_19:39819119-39826633:-|nuORF;ENST00000598034.5_1_19:39819119-39819212:-|nuORF	ENSG00000130755|ENST00000597595|GMFG	ENSG00000130755|ENST00000597595|GMFG	MULTI-MSMS	OvCa99_classI_Rep5	1	559.2996826171875	2	559.298039	1116.58152	2.8703	0.0016053	-0.60367	-0.00033763	2.2666	0.0012677	559.2975463214949	95.886	0.76205	95.886	95.656	96.418	0					30	17	2	0	0	0	0.024645	1	10483	10483		141.52	26.026	1	850700			56109	4010	46323	46363	61300	61300					0.027897082691424657
TEDEKSKLTVL	11	Unmodified	_TEDEKSKLTVL_					0	0	0		nc|ENSG00000123240|Q96CV9-3|OPTN;nc|ENSG00000123240|Q96CV9-2|OPTN;ENSG00000123240|ENST00000378747|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	nc|ENSG00000123240|Q96CV9-3|OPTN	MULTI-MSMS	OvCa99_classI_Rep5	1	631.8468627929688	2	631.84555	1261.67655	0.24864	0.0001571	-0.25248	-0.00015953	-0.0038357	-2.4236E-06	631.8453083367347	64.545	0.8623	64.545	64.21	65.072	0					49	18	4	0	0	0	0.27273	1	5861	5861		70.399	8.7073	1	3534700			56110	3584	46324	46364	61301	61301					0.05617596949673498
TEDERKILL	9	Unmodified	_TEDERKILL_					0	0	0		PIKFYVE|p.V1377Sfs*13|1|0.04|ENSG00000115020|chr2:208333479-208333480|-/A|frameshift_variant;ENSG00000115020|ENST00000264380|PIKFYVE;ENST00000477200.1_1_2:209163383-209167125:+|nuORF;nc|ENSG00000115020|Q9Y2I7-2|PIKFYVE;nc|ENSG00000115020|Q9Y2I7-3|PIKFYVE;nc|ENSG00000115020|Q9Y2I7-4|PIKFYVE	PIKFYVE|p.V1377Sfs*13|1|0.04|ENSG00000115020|chr2:208333479-208333480|-/A|frameshift_variant	PIKFYVE|p.V1377Sfs*13|1|0.04|ENSG00000115020|chr2:208333479-208333480|-/A|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	558.8181762695312	2	558.816596	1115.61864	0.54917	0.00030688	-0.72966	-0.00040774	-0.18049	-0.00010086	558.8160235007364	64.713	0.74024	64.713	64.294	65.034	0					41	17	3	0	0	0	0.070405	1	5893	5893		107.01	0	1	2615400			56111	3057	46325	46365	61302	61302					0.0654537981492922
TEDHVMHLL	9	Oxidation (M)	_TEDHVM(Oxidation (M))HLL_		TEDHVM(1)HLL		TEDHVM(66)HLL	0	0	1		nc|ENSG00000019582|P04233-5|CD74;nc|ENSG00000019582|P04233-2|CD74;nc|ENSG00000019582|P04233-4|CD74;ENSG00000019582|ENST00000009530|CD74;ENST00000523813.1_1_5:149785162-149785881:-|nuORF;ENST00000523836.5_1_5:149785806-149792312:-|nuORF;nc|ENSG00000019582|P04233-3|CD74;ENST00000517791.1_1_5:149785806-149786884:-|nuORF	nc|ENSG00000019582|P04233-5|CD74;ENST00000517791.1_1_5:149785806-149786884:-|nuORF	nc|ENSG00000019582|P04233-5|CD74	MULTI-MSMS	OvCa99_classI_Rep5	1	555.76806640625	2	555.766049	1109.51754	0.42034	0.00023361	-0.20368	-0.0001132	0.21666	0.00012041	555.7660992671207	57.961	1.0503	57.961	57.48	58.53	0					65	24	4	0	0	0	0.27546	1	4897	4897		65.803	19.831	1	1580600			56112	1019;13062	46326	46366	61303	61303		34			-0.032833951594511745
TEDHVMHLL	9	Unmodified	_TEDHVMHLL_					0	0	0		nc|ENSG00000019582|P04233-5|CD74;nc|ENSG00000019582|P04233-2|CD74;nc|ENSG00000019582|P04233-4|CD74;ENSG00000019582|ENST00000009530|CD74;ENST00000523813.1_1_5:149785162-149785881:-|nuORF;ENST00000523836.5_1_5:149785806-149792312:-|nuORF;nc|ENSG00000019582|P04233-3|CD74;ENST00000517791.1_1_5:149785806-149786884:-|nuORF	nc|ENSG00000019582|P04233-5|CD74;ENST00000517791.1_1_5:149785806-149786884:-|nuORF	nc|ENSG00000019582|P04233-5|CD74	MULTI-MSMS	OvCa99_classI_Rep5	1	547.7697143554688	2	547.768591	1093.52263	2.0158	0.0011042	-0.18553	-0.00010163	1.8303	0.0010026	547.7684810462365	76.385	2.3788	76.385	76.036	78.415	0					163	57	5	0	0	0	0.027215	5	7631	7631;7660;7691;7728;7758		138.48	58.54	1	41232000			56113	1019;13062	46326	46367	61304;61305;61306;61307;61308	61304					-0.020390912968423436
TEDHWVLL	8	Unmodified	_TEDHWVLL_					0	0	0		DMD|p.R550H|1|0.09|ENSG00000198947|chrX:32573800-32573800|C/T|missense_variant	DMD|p.R550H|1|0.09|ENSG00000198947|chrX:32573800-32573800|C/T|missense_variant	DMD|p.R550H|1|0.09|ENSG00000198947|chrX:32573800-32573800|C/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.79400634765625	2	506.758549	1011.50255	-1.1882	-0.00060214	0.68932	0.00034932	-0.4989	-0.00025282	506.75881442078276	71.244	1.5009	67.787	67.008	68.509	-3.4563					39	30	2	0	0	0	0.028476	1	5464	5464		74.517	3.2209	1	31901			56114	743	46327	46368	61309	61309					-0.002745189651363944
TEDIPVKTL	9	Unmodified	_TEDIPVKTL_					0	0	0		ENSG00000196305|ENST00000443024|IARS1;IPPK-IARS|1|fusion	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.30908203125	2	508.28714	1014.55973	-1.2986	-0.00066006	0.87257	0.00044352	-0.42603	-0.00021654	508.28754592684936	82.752	1.5048	80.456	79.938	81.443	-2.2963					63	30	4	0	0	0	0.027226	1	4677	4677		124.08	15.993	1	1197000			56115	8588	46328	46369	61310	61310					0.05302903520566815
TEDIPVKTL	9	Unmodified	_TEDIPVKTL_					0	0	0		ENSG00000196305|ENST00000443024|IARS1;IPPK-IARS|1|fusion	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.28448486328125	2	508.28714	1014.55973	-0.49683	-0.00025253	0.026341	1.3389E-05	-0.47049	-0.00023915	508.2869980359907	83.135	1.0705	80.452	80.076	81.147	-2.6829					56	17	5	0	0	0	0.043101	2	6898	6898;6907		124.08	27.89	1	961900			56116	8588	46328	46369	61311;61312	61311					0.05302903520566815
TEDITRYFL	9	Unmodified	_TEDITRYFL_					0	0	0		nc|ENSG00000079819|O43491-2|EPB41L2;nc|ENSG00000079819|O43491-3|EPB41L2;nc|ENSG00000079819|O43491-4|EPB41L2;ENSG00000079819|ENST00000337057|EPB41L2	nc|ENSG00000079819|O43491-2|EPB41L2	nc|ENSG00000079819|O43491-2|EPB41L2	MULTI-MSMS	OvCa99_classI_Rep5	1	579.2981567382812	2	579.295496	1156.57644	1.6342	0.00094667	0.69406	0.00040207	2.3282	0.0013487	579.2957392038977	120.21	0.69449	120.21	119.96	120.65	0					36	16	4	0	0	0	0.1149	1	13812	13812		93.143	21.266	1	1130100			56117	1622	46329	46370	61313	61313					0.004414044065242706
TEDPLEVRI	9	Unmodified	_TEDPLEVRI_					0	0	0		nc|ENSG00000075292|Q14966-6|ZNF638;nc|ENSG00000075292|Q14966-2|ZNF638;nc|ENSG00000075292|Q14966-4|ZNF638;nc|ENSG00000075292|Q14966-3|ZNF638;ENSG00000075292|ENST00000264447|ZNF638	nc|ENSG00000075292|Q14966-6|ZNF638	nc|ENSG00000075292|Q14966-6|ZNF638	MULTI-MSMS	OvCa99_classI_Rep5	1	536.2890014648438	2	536.287671	1070.56079	2.0729	0.0011117	0.60045	0.00032201	2.6734	0.0014337	536.2879512136942	99.965	0.45538	99.965	99.694	100.15	0					25	10	3	0	0	0	0.16562	1	11070	11070		82.241	10.945	1	1180300			56118	14891	46330	46371	61314	61314					0.028331178894632103
TEDQRFPQL	9	Unmodified	_TEDQRFPQL_					0	0	0		PDXDC1-NOB1|1|fusion;ENSG00000141101|ENST00000268802|NOB1	PDXDC1-NOB1|1|fusion	PDXDC1-NOB1|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	567.2786254882812	2	567.28292	1132.55129	2.3897	0.0013557	0.049587	2.813E-05	2.4393	0.0013838	567.2830163161398	84.065	0.71692	84.065	83.714	84.431	0					47	16	4	0	0	0	0.17606	1	8760	8760		80.455	10.827	1	1852800			56119	4895	46331	46372	61315	61315					-0.009686503960438131
TEDRLEQL	8	Unmodified	_TEDRLEQL_					0	0	0		ENST00000380874.3_1_6:1612095-1612257:+|nuORF	ENST00000380874.3_1_6:1612095-1612257:+|nuORF	ENST00000380874.3_1_6:1612095-1612257:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	502.257568359375	2	502.256371	1002.49819	0.11088	5.5689E-05	0.072528	3.6428E-05	0.18341	9.2116E-05	502.2562620638479	62.396	0.82086	62.396	62.081	62.902	0					51	19	3	0	0	0	0.22496	1	5551	5551		120.62	5.1269	1	1992600			56120	11153	46332	46373	61316	61316					-0.0029602817870681974
TEDTLKVY	8	Unmodified	_TEDTLKVY_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	484.7516784667969	2	484.75039	967.486227	-0.31881	-0.00015454	0.12544	6.0808E-05	-0.19337	-9.3734E-05	484.75030866236324	68.567	0.66505	68.567	68.274	68.939	0					32	15	3	0	0	0	0.11987	1	6474	6474		138.83	44.819	1	1504300			56121	6293	46333	46374	61317	61317					0.0011835507809792034
TEDTLKVYL	9	Unmodified	_TEDTLKVYL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	541.2944946289062	2	541.292422	1080.57029	1.2933	0.00070008	-0.19292	-0.00010443	1.1004	0.00059565	541.2926842593455	98.31	1.0296	98.31	97.522	98.552	0					88	23	7	0	0	0	0.0094524	2	10811	10811;10840		171.38	80.608	1	208390000			56122	6293	46334	46375	61318;61319	61318					0.03322886175010353
TEDTLKVYL	9	Unmodified	_TEDTLKVYL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	541.2938232421875	2	541.292422	1080.57029	2.348	0.001271	-0.72274	-0.00039121	1.6253	0.00087976	541.292069914206	98.706	3.9523	98.706	98.552	102.5	0					270	94	6	0	0	0	0.0094524	10	10894	10864;10894;10924;10954;10984;11014;11044;11075;11104;11136		171.38	86.025	1	216670000			56123	6293	46334	46375	61320;61321;61322;61323;61324;61325;61326;61327;61328;61329	61321					0.03322886175010353
TEEERKIIL	9	Unmodified	_TEEERKIIL_					0	0	0		RIMS2|p.L32I|1|0.17|ENSG00000176406|chr8:103819601-103819601|C/A|missense_variant;nc|ENSG00000176406|Q9UQ26-4|RIMS2;nc|ENSG00000176406|Q9UQ26-5|RIMS2;nc|ENSG00000176406|Q9UQ26-2|RIMS2;nc|ENSG00000176406|Q9UQ26-8|RIMS2;nc|ENSG00000176406|Q9UQ26|RIMS2;ENSG00000176406|ENST00000696799|RIMS2	RIMS2|p.L32I|1|0.17|ENSG00000176406|chr8:103819601-103819601|C/A|missense_variant	RIMS2|p.L32I|1|0.17|ENSG00000176406|chr8:103819601-103819601|C/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	565.8236083984375	2	565.824421	1129.63429	-1.6624	-0.00094061	1.3407	0.00075858	-0.32171	-0.00018203	565.8250621645125	34.497	1.3866	31.787	31.513	32.9	-2.7097					82	27	4	0	0	0	0.27001	1	1342	1342		66.429	2.8954	1	859200			56124	7604	46335	46376	61330	61330					0.0746566633195016
TEEFEDGR	8	Unmodified	_TEEFEDGR_					0	0	0		nc|ENSG00000120251|P42262-4|GRIA2;nc|ENSG00000120251|P42262-2|GRIA2;ENSG00000120251|ENST00000264426|GRIA2;nc|ENSG00000120251|P42262-3|GRIA2	nc|ENSG00000120251|P42262-4|GRIA2	nc|ENSG00000120251|P42262-4|GRIA2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.7830810546875	2	491.709254	981.403954	-0.68533	-0.00033698	-4.2217	-0.0020759	-4.9071	-0.0024128	491.7071156126473	71.601	0.8789	68.145	67.874	68.753	-3.4563					34	17	3	0	0	0	0.028476	1	5521	5521		23.042	0	1	133900			56125	3421	46336	46377	61331	61331					-0.08749167000837588
TEEFLKGEA	9	Unmodified	_TEEFLKGEA_					0	0	0			REV__ENSG00000138078|ENST00000409411|PREPL	REV__ENSG00000138078|ENST00000409411|PREPL	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.2614135742188	2	512.253297	1022.49204	1.9397	0.00099361	3.8222	0.0019579	5.7618	0.0029515	512.2549790040831	115.5	0.46588	115.5	115.16	115.63	0					12	9	2	0	0	0	0.027462	1	13214	13214		21.96	0	1	89676	+		56126	19507	46337	46378	61332	61332					-0.018305464102354563
TEEGQKIVL	9	Unmodified	_TEEGQKIVL_					0	0	0		nc|ENSG00000116791|Q08257-2|CRYZ;nc|ENSG00000116791|Q08257-3|CRYZ;ENSG00000116791|ENST00000340866|CRYZ	nc|ENSG00000116791|Q08257-2|CRYZ	nc|ENSG00000116791|Q08257-2|CRYZ	MULTI-MSMS	OvCa99_classI_Rep5	1	508.7862548828125	2	508.784764	1015.55498	-0.50601	-0.00025745	-0.27633	-0.00014059	-0.78234	-0.00039804	508.78461024196775	67.921	1.2496	67.921	67.566	68.815	0					79	28	5	0	0	0	0.030815	1	6400	6400		134.81	26.723	1	22094000			56127	3209	46338	46379	61333	61333					0.04782019377796587
TEEIKHLI	8	Unmodified	_TEEIKHLI_					0	0	0			REV__tr|A0A553SFI6|A0A553SFI6_NIACIEnoyl-[acyl-carrier-protein]reductase[NADH]OS=NialliacirculansOX=1397GN=fabIPE=3SV=1	REV__tr|A0A553SFI6|A0A553SFI6_NIACIEnoyl-[acyl-carrier-protein]reductase[NADH]OS=NialliacirculansOX=1397GN=fabIPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	491.7826232910156	2	491.782025	981.549496	-1.3736	-0.00067551	1.225	0.00060241	-0.14865	-7.3101E-05	491.78231059263607	85.701	2.7769	83.481	82.937	85.714	-2.2204					157	54	6	0	0	0	0.50674	1	5039	5039		76.847	2.8719	1	1138800	+		56128	29583	46339	46380	61334	61334					0.05798340585999995
TEEIQLHSL	9	Unmodified	_TEEIQLHSL_					0	0	0		sp|P16798|UL92_HCMVAProteinUL92OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL92PE=3SV=1;sp|F5HAS7|UL92_HCMVMUncharacterizedproteinUL92OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL92PE=4SV=1	sp|P16798|UL92_HCMVAProteinUL92OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL92PE=3SV=1	sp|P16798|UL92_HCMVAProteinUL92OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL92PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.7819213867188	2	535.279846	1068.54514	0.75302	0.00040308	3.8231	0.0020464	4.5762	0.0024495	535.2817380375853	66.942	0.99952	66.942	66.372	67.371	0					40	24	2	0	0	0	0.027462	1	6179	6179		25.574	16.391	1	2569700			56129	32849	46340	46381	61335	61335					0.013608313724262189
TEEKIVPYL	9	Unmodified	_TEEKIVPYL_					0	0	0			REV__nc|ENSG00000185811|Q13422-2|IKZF1	REV__nc|ENSG00000185811|Q13422-2|IKZF1	MULTI-MSMS	OvCa9_classI_Rep2	2	546.3021240234375	2	546.30279	1090.59103	-0.2131	-0.00011642	-0.1086	-5.9327E-05	-0.3217	-0.00017574	546.3025770219067	114.62	1.3818	114.5	114.16	115.54	-0.11777					62	27	3	0	0	0	0.37135	1	10915	10915		54.776	1.8396	1	158540	+		56130	22532	46341	46382	61336	61336					0.04935476554669549
TEEKLECSLW	10	Unmodified	_TEEKLECSLW_					0	0	0		ENST00000559714.5_1_15:100348375-100353279:+|nuORF;ENST00000560292.2_1_15:102277413-102284889:-|nuORF	ENST00000559714.5_1_15:100348375-100353279:+|nuORF	ENST00000559714.5_1_15:100348375-100353279:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	619.8174438476562	2	619.292096	1236.56964	1.0481	0.00064907	4.1926	0.0025964	5.2407	0.0032455	619.2949105005446	123.39	0.46671	123.39	123.18	123.65	0					15	9	2	0	0	0	0.027056	1	14211	14211		27.882	0	1	51825			56131	13721	46342	46383	61337	61337					-0.039182765363648286
TEEKLPNIS	9	Unmodified	_TEEKLPNIS_					0	0	0		ENST00000457761.6_1_2:172821936-172844354:+|nuORF	ENST00000457761.6_1_2:172821936-172844354:+|nuORF	ENST00000457761.6_1_2:172821936-172844354:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	515.774169921875	2	515.774396	1029.53424	0.6844	0.000353	-0.88489	-0.0004564	-0.20049	-0.00010341	515.7739065708082	110.02	1.9535	108.87	108.45	110.41	-1.1444					80	37	3	0	0	0	0.2784	1	7945	7945		65.465	1.9315	1	355220			56132	12132	46343	46384	61338	61338					0.02065428998139396
TEELSLPDI	9	Unmodified	_TEELSLPDI_					0	0	0		nc|ENSG00000110721|P35790-2|CHKA;ENSG00000110721|ENST00000265689|CHKA	nc|ENSG00000110721|P35790-2|CHKA	nc|ENSG00000110721|P35790-2|CHKA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.8030090332031	2	508.760955	1015.50736	-0.77991	-0.00039679	2.2426	0.001141	1.4627	0.00074417	508.76177381653656	51.302	1.4082	48.129	47.721	49.129	-3.1734					46	27	2	0	0	0	0.027426	1	3011	3011		63.306	19.189	1	151290			56133	2791	46344	46385	61339	61339					0.0002232038694955918
TEEPHTTPQ	9	Unmodified	_TEEPHTTPQ_					0	0	0			REV__nc|ENSG00000108840|Q9UQL6-2|HDAC5	REV__nc|ENSG00000108840|Q9UQL6-2|HDAC5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.28125	2	520.238178	1038.4618	-0.031868	-1.6579E-05	-3.3237	-0.0017291	-3.3555	-0.0017457	520.2363518406293	59.846	0.73624	56.428	56.025	56.761	-3.4181					20	14	2	0	0	0	0.027462	1	3971	3971		40.778	12.896	1	35533	+		56134	17907	46345	46386	61340	61340					-0.05588905075433104
TEEPMGITL	9	Unmodified	_TEEPMGITL_					0	0	0		nc|ENSG00000130830|Q00013-3|MPP1;ENSG00000130830|ENST00000369534|MPP1;nc|ENSG00000130830|Q00013-2|MPP1;ENST00000471821.1_1_X:154019969-154033702:-|nuORF	nc|ENSG00000130830|Q00013-3|MPP1	nc|ENSG00000130830|Q00013-3|MPP1	MULTI-MSMS	OvCa99_classI_Rep5	1	495.7459716796875	2	495.74425	989.473948	1.725	0.00085517	0.70309	0.00034855	2.4281	0.0012037	495.7444483252606	118.4	1.0837	118.4	118.11	119.19	0					45	22	3	0	0	0	0.18193	2	13560	13560;13585		79.451	16.145	1	636650			56135	4021	46346	46387	61341;61342	61341					-0.02121004656578407
TEEPSNLKK	9	Unmodified	_TEEPSNLKK_					0	0	0			REV__nc|ENSG00000058804|Q9BTX1-6|NDC1;REV__TMEM48-MTMR12|1|fusion	REV__TMEM48-MTMR12|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	523.2771606445312	2	523.279846	1044.54514	1.3652	0.0007144	-4.1056	-0.0021484	-2.7404	-0.001434	523.2775136788366	29.663	0.92439	26.953	26.732	27.656	-2.7097					38	18	3	0	0	0	0.59259	1	749	749		32.812	3.6629	1	85060	+		56136	16731;29514	46347	46388	61343	61343					0.02464831372435583
TEESAELLVE	10	Unmodified	_TEESAELLVE_					0	0	0			REV__nc|ENSG00000105176|O94763-2|URI1	REV__nc|ENSG00000105176|O94763-2|URI1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.3104248046875	2	560.274426	1118.5343	-0.0013139	-7.3612E-07	2.1501	0.0012047	2.1488	0.0012039	560.2760566720156	71.671	0.72879	68.215	68.024	68.753	-3.4563					23	14	2	0	0	0	0.026915	1	5477	5477		14.865	0	1	16351	+		56137	17702	46348	46389	61344	61344					-0.020226157924980726
TEETEFSTP	9	Unmodified	_TEETEFSTP_					0	0	0			REV__ENSG00000164715|ENST00000297293|LMTK2	REV__ENSG00000164715|ENST00000297293|LMTK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.76806640625	2	520.724569	1039.43459	-0.082243	-4.2826E-05	3.782	0.0019694	3.6997	0.0019265	520.7261037239604	74.062	0.34603	74.062	73.868	74.214	0					11	8	2	0	0	0	0.027462	1	7294	7294		30.504	0	1	272270	+		56138	21014	46349	46390	61345	61345					-0.08355433406450175
TEFCRDVN	8	Unmodified	_TEFCRDVN_					0	0	0			REV__ENSG00000092148|ENST00000399332|HECTD1	REV__ENSG00000092148|ENST00000399332|HECTD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.7829284667969	2	492.216192	982.41783	1.5134	0.00074492	-2.5142	-0.0012375	-1.0008	-0.0004926	492.2149141589704	86.414	0.7374	83.787	83.562	84.3	-2.6269					18	14	2	0	0	0	0.028476	1	7280	7280		65.803	2.4969	1	35023	+		56139	17263	46350	46391	61346	61346					-0.07408212773418654
TEFSNHLL	8	Unmodified	_TEFSNHLL_					0	0	0		ENST00000307602.8_1_8:42885180-42885507:+|nuORF	ENST00000307602.8_1_8:42885180-42885507:+|nuORF	ENST00000307602.8_1_8:42885180-42885507:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.296142578125	2	480.742899	959.471246	-0.72605	-0.00034904	0.45784	0.0002201	-0.26821	-0.00012894	480.7427258925544	93.314	0.52599	90.807	90.614	91.14	-2.5072					17	10	2	0	0	0	0.028476	1	8162	8162		38.806	0	1	42030			56140	10257	46351	46392	61347	61347					-0.010110919992371237
TEFTLKEDL	9	Unmodified	_TEFTLKEDL_					0	0	0		ENSG00000168386|ENST00000477258|FILIP1L;nc|ENSG00000168386|Q4L180-6|FILIP1L;nc|ENSG00000168386|Q4L180-5|FILIP1L;nc|ENSG00000168386|Q4L180-3|FILIP1L;nc|ENSG00000168386|Q4L180-7|FILIP1L;nc|ENSG00000168386|Q4L180-2|FILIP1L;nc|ENSG00000168386|Q4L180|FILIP1L	ENSG00000168386|ENST00000477258|FILIP1L	ENSG00000168386|ENST00000477258|FILIP1L	MULTI-MSMS	OvCa99_classI_Rep5	1	548.28369140625	2	548.282054	1094.54956	2.4719	0.0013553	0.71602	0.00039258	3.1879	0.0017479	548.2819981226179	94.324	0.38108	94.324	94.136	94.517	0					18	8	4	0	0	0	0.2784	1	10267	10267		65.465	2.487	1	1384300			56141	6898	46352	46393	61348	61348					0.006062957953417936
TEGDIICMFS	10	Unmodified	_TEGDIICMFS_					0	0	0		RBMX2|p.V55M|1|0.04|ENSG00000134597|chrX:130403843-130403843|G/A|missense_variant	RBMX2|p.V55M|1|0.04|ENSG00000134597|chrX:130403843-130403843|G/A|missense_variant	RBMX2|p.V55M|1|0.04|ENSG00000134597|chrX:130403843-130403843|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	558.2411499023438	2	558.241018	1114.46748	1.6261	0.00090774	-1.5157	-0.00084615	0.11033	6.1592E-05	558.2399257549795	129.07	1.6804	128.84	128.53	130.21	-0.22696					70	33	3	0	0	0	0.48198	2	12659	12655;12659		56.721	7.2795	1	122720			56142	15544	46353	46394	61349;61350	61350					-0.08517265879618208
TEGDIICMFS	10	Unmodified	_TEGDIICMFS_					0	0	0		RBMX2|p.V55M|1|0.04|ENSG00000134597|chrX:130403843-130403843|G/A|missense_variant	RBMX2|p.V55M|1|0.04|ENSG00000134597|chrX:130403843-130403843|G/A|missense_variant	RBMX2|p.V55M|1|0.04|ENSG00000134597|chrX:130403843-130403843|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	558.2407836914062	2	558.241018	1114.46748	0.10444	5.8305E-05	0.00096786	5.403E-07	0.10541	5.8845E-05	558.2407957364876	129.77	1.2857	128.66	128.39	129.67	-1.1121					56	25	3	0	0	0	0.48198	3	10277	10266;10277;10283		56.721	3.5405	1	138850			56143	15544	46353	46394	61351;61352;61353	61352					-0.08517265879618208
TEGDIICMFS	10	Unmodified	_TEGDIICMFS_					0	0	0		RBMX2|p.V55M|1|0.04|ENSG00000134597|chrX:130403843-130403843|G/A|missense_variant	RBMX2|p.V55M|1|0.04|ENSG00000134597|chrX:130403843-130403843|G/A|missense_variant	RBMX2|p.V55M|1|0.04|ENSG00000134597|chrX:130403843-130403843|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.2401733398438	2	558.241018	1114.46748	3.1131	0.0017378	-3.1526	-0.0017599	-0.039486	-2.2043E-05	558.2390583607403	130.11	1.3788	128.63	128.27	129.64	-1.4779					62	27	3	0	0	0	0.33376	1	12474	12474		76.774	23.423	1	202230			56144	15544	46353	46394	61354	61354					-0.08517265879618208
TEGEDKITL	9	Unmodified	_TEGEDKITL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OvCa99_classI_Rep5	1	503.259765625	2	503.258579	1004.50261	-0.31227	-0.00015715	0.34198	0.0001721	0.029712	1.4953E-05	503.2587103597876	69.45	1.9539	69.45	68.649	70.603	0					113	47	4	0	0	0	0.014622	2	6617	6590;6617		154.12	43.998	1	26974000			56145	3119	46354	46395	61355;61356	61356					0.0005343624420675042
TEGEEQILIK	10	Unmodified	_TEGEEQILIK_					0	0	0			REV__tr|A0A7D6VTB3|A0A7D6VTB3_9CLOTendopeptidaseLaOS=ClostridiumintestinaleOX=36845GN=HZF06_16610PE=3SV=1	REV__tr|A0A7D6VTB3|A0A7D6VTB3_9CLOTendopeptidaseLaOS=ClostridiumintestinaleOX=36845GN=HZF06_16610PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	580.3155517578125	2	580.313886	1158.61322	-1.3834	-0.00080281	2.1613	0.0012542	0.77793	0.00045144	580.3149477331644	80.602	1.7073	77.892	77.516	79.223	-2.7106					74	34	3	0	0	0	0.65849	1	6611	6611		35.152	0.97948	1	470550	+		56146	31590	46355	46396	61357	61357					0.04025656232442998
TEGELSGQTI	10	Unmodified	_TEGELSGQTI_					0	0	0		ENST00000205061.9_2_16:74483815-74483935:-|nuORF	ENST00000205061.9_2_16:74483815-74483935:-|nuORF	ENST00000205061.9_2_16:74483815-74483935:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.7540283203125	2	517.753661	1033.49277	-1.2976	-0.00067184	1.9974	0.0010342	0.69985	0.00036235	517.7545356388162	100.05	2.0169	97.722	96.899	98.916	-2.3253					102	39	4	0	0	0	0.49558	1	8969	8969		54.776	1.8396	1	963830			56147	9654	46356	46397	61358	61358					-0.02263751761165622
TEGFLRGIA	9	Unmodified	_TEGFLRGIA_					0	0	0			REV__nc|ENSG00000184908|P51801-2|CLCNKB	REV__nc|ENSG00000184908|P51801-2|CLCNKB	MULTI-MSMS	OvCa99_classI_Rep5	1	482.2677001953125	2	482.266542	962.51853	2.199	0.0010605	0.083688	4.036E-05	2.2827	0.0011009	482.2664292414749	82.364	0.97321	82.364	82.061	83.035	0					66	22	4	0	0	0	0.38529	1	8531	8531		53.351	0	1	2882400	+		56148	16148	46357	46398	61359	61359					0.03577187271764615
TEGLLGAF	8	Unmodified	_TEGLLGAF_					0	0	0		ENST00000560665.1_1_15:65804856-65809996:-|nuORF	ENST00000560665.1_1_15:65804856-65809996:-|nuORF	ENST00000560665.1_1_15:65804856-65809996:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	404.2183837890625	2	404.215986	806.417419	-1.0304	-0.00041651	-0.10422	-4.2126E-05	-1.1346	-0.00045864	404.2158905620049	104.27	0.55598	104.27	103.89	104.45	0					24	12	3	0	0	0	0.57589	1	11672	11672		69.093	3.2898	1	419680			56149	13738	46358	46399	61360	61360					0.006467355690460863
TEGQKLILL	9	Unmodified	_TEGQKLILL_					0	0	0		ENSG00000132704|ENST00000361516|FCRL2;ENST00000368178.3_1_1:157738198-157738513:-|nuORF	ENSG00000132704|ENST00000361516|FCRL2	ENSG00000132704|ENST00000361516|FCRL2	MSMS	OvCa9_classI_Rep4_	4	507.8131103515625	2	507.813325	1013.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.89	1	108.28	107.78	108.78	-1.6011								0	0	0	0.17192	1	10096	10096		45.972	7.1661	1				56150	4167	46359	46400	61361	61361					0.10583486654206808
TEHHWEII	8	Unmodified	_TEHHWEII_					0	0	0			REV__ENSG00000187105|ENST00000553558|HEATR4	REV__ENSG00000187105|ENST00000553558|HEATR4	MULTI-MSMS	OvCa9_classI_Rep3	3	532.763671875	2	532.761623	1063.50869	1.0391	0.00055361	1.7492	0.00093191	2.7883	0.0014855	532.7625453162051	119.44	1.5811	118.41	117.88	119.46	-1.0271					87	31	5	0	0	0	0.62934	1	9097	9097		57.811	6.4758	1	495830	+		56151	22631	46360	46401	61362	61362					-0.020520007336017443
TEHINIHQL	9	Unmodified	_TEHINIHQL_					0	0	0		ENST00000487290.5_1_3:121363549-121379717:-|nuORF;ENST00000481314.5_1_3:121363541-121379717:-|nuORF;nc|ENSG00000180353|P14317-2|HCLS1;ENSG00000180353|ENST00000314583|HCLS1	ENST00000487290.5_1_3:121363549-121379717:-|nuORF	ENST00000487290.5_1_3:121363549-121379717:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	552.7950439453125	2	552.793455	1103.57236	0.10466	5.7858E-05	0.9825	0.00054312	1.0872	0.00060097	552.7938361422922	62.751	1.2496	62.751	62.165	63.414	0					95	30	4	0	0	0	0.035142	2	5591	5591;5620		131.03	58.152	1	8034000			56152	7870	46361	46402	61363;61364	61363					0.024713597034860868
TEHINIHQL	9	Unmodified	_TEHINIHQL_					0	0	0		ENST00000487290.5_1_3:121363549-121379717:-|nuORF;ENST00000481314.5_1_3:121363541-121379717:-|nuORF;nc|ENSG00000180353|P14317-2|HCLS1;ENSG00000180353|ENST00000314583|HCLS1	ENST00000487290.5_1_3:121363549-121379717:-|nuORF	ENST00000487290.5_1_3:121363549-121379717:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	552.7915649414062	2	552.793455	1103.57236	1.8731	0.0010355	-2.2888	-0.0012653	-0.41569	-0.00022979	552.7921122361305	65.697	2.2372	63.001	62.62	64.857	-2.6958					113	44	5	0	0	0	0.022645	5	5061	5053;5056;5061;5070;5076		143.89	67.113	1	773290			56153	7870	46361	46402	61365;61366;61367;61368;61369	61367					0.024713597034860868
TEHINIHQL	9	Unmodified	_TEHINIHQL_					0	0	0		ENST00000487290.5_1_3:121363549-121379717:-|nuORF;ENST00000481314.5_1_3:121363541-121379717:-|nuORF;nc|ENSG00000180353|P14317-2|HCLS1;ENSG00000180353|ENST00000314583|HCLS1	ENST00000487290.5_1_3:121363549-121379717:-|nuORF	ENST00000487290.5_1_3:121363549-121379717:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.7938842773438	2	552.793455	1103.57236	-0.31492	-0.00017409	-0.071845	-3.9715E-05	-0.38677	-0.0002138	552.7933197982233	66.475	1.9139	62.985	62.612	64.526	-3.4902					112	38	5	0	0	0	0.045281	2	4847	4833;4847		122.18	52.548	1	1023900			56154	7870	46361	46402	61370;61371	61371					0.024713597034860868
TEHLQVITTL	10	Unmodified	_TEHLQVITTL_					0	0	0		nc|ENSG00000039560|Q9P0K7-4|RAI14;nc|ENSG00000039560|Q9P0K7-3|RAI14;ENSG00000039560|ENST00000265109|RAI14;nc|ENSG00000039560|Q9P0K7-2|RAI14	nc|ENSG00000039560|Q9P0K7-4|RAI14	nc|ENSG00000039560|Q9P0K7-4|RAI14	MSMS	OvCa99_classI_Rep5	1	577.8255615234375	2	577.824421	1153.63429	NaN	NaN	NaN	NaN	NaN	NaN	NaN	98.129	1	98.129	97.629	98.629	0								0	0	0	0.096328	1	10801	10801		90.601	5.44	1				56155	1107	46362	46403	61372	61372					0.06361666331940796
TEIALVTGRLL	11	Unmodified	_TEIALVTGRLL_					0	0	0			REV__tr|A0A553SNI4|A0A553SNI4_NIACIHeaddecorationproteinOS=NialliacirculansOX=1397GN=CEQ21_24450PE=4SV=1	REV__tr|A0A553SNI4|A0A553SNI4_NIACIHeaddecorationproteinOS=NialliacirculansOX=1397GN=CEQ21_24450PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.3192138671875	2	593.363713	1184.71287	2.3356	0.0013858	-0.21742	-0.00012901	2.1181	0.0012568	593.3633237949115	97.102	0.55868	97.102	96.795	97.353	0					26	12	3	0	0	0	0.025701	1	10652	10652		22.58	0.89391	1	675060	+		56156	30425	46363	46404	61373	61373					0.12790518637052628
TEIDEKEYI	9	Unmodified	_TEIDEKEYI_					0	0	0		ENSG00000131467|ENST00000590720|PSME3;nc|ENSG00000131467|P61289-3|PSME3;nc|ENSG00000131467|P61289-2|PSME3	ENSG00000131467|ENST00000590720|PSME3	ENSG00000131467|ENST00000590720|PSME3	MULTI-MSMS	OvCa99_classI_Rep5	1	570.2793579101562	2	570.276969	1138.53938	2.1221	0.0012102	-0.379	-0.00021614	1.7431	0.00099405	570.2765822050546	77.229	0.70515	77.229	76.882	77.588	0					38	13	4	0	0	0	0.16562	1	7783	7783		82.241	15.811	1	1139500			56157	4067	46364	46405	61374	61374					-0.02434311929891919
TEIDGRSISL	10	Unmodified	_TEIDGRSISL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;ENST00000494618.1_1_2:232322276-232325237:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MSMS	OvCa99_classI_Rep5	1	545.7926635742188	2	545.790578	1089.5666	NaN	NaN	NaN	NaN	NaN	NaN	NaN	90.45	1	90.45	89.95	90.95	0								0	0	0	0.065988	1	9700	9700		104.01	4.6386	1				56158	3058	46365	46406	61375	61375					0.025402164011666173
TEIDGRSISL	10	Unmodified	_TEIDGRSISL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;ENST00000494618.1_1_2:232322276-232325237:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	OvCa9_classI_Rep3	3	545.7915649414062	2	545.790578	1089.5666	-1.4153	-0.00077245	0.68603	0.00037443	-0.72927	-0.00039803	545.7910515981994	91.93	1.8846	89.906	89.332	91.216	-2.0241					114	38	6	0	0	0	0.27679	2	5792	5792;5798		83.647	14.019	1	616940			56159	3058	46365	46406	61376;61377	61376					0.025402164011666173
TEIDGRSISL	10	Unmodified	_TEIDGRSISL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;ENST00000494618.1_1_2:232322276-232325237:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.790283203125	2	545.790578	1089.5666	-1.2275	-0.00066996	1.2971	0.00070797	0.069636	3.8007E-05	545.791226931348	92.379	1.7616	89.837	89.262	91.024	-2.5425					88	34	4	0	0	0	0.25842	2	8013	8013;8025		85.862	14.566	1	540260			56160	3058	46365	46406	61378;61379	61378					0.025402164011666173
TEIDGRSISL	10	Unmodified	_TEIDGRSISL_					0	0	0		ENSG00000115053|ENST00000322723|NCL;ENST00000461347.5_1_2:232319904-232323320:-|nuORF;ENST00000494618.1_1_2:232322276-232325237:-|nuORF	ENSG00000115053|ENST00000322723|NCL	ENSG00000115053|ENST00000322723|NCL	MULTI-MATCH	OvCa9_classI_Rep2	2		2	545.790578	1089.5666	1.0261	0.00056004	-0.99434	-0.0005427	0.031763	1.7336E-05	545.7900829126847	91.266	1.9289	90.031	89.291	91.22	-1.2355	0.10643	-0.0016339	NaN	85.862	105	36	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	380210			56161	3058	46365	46406							0.025402164011666173
TEIEALKEEL	10	Unmodified	_TEIEALKEEL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF;ENST00000581937.1_1_18:9678609-9679128:-|nuORF;ENST00000505048.1_1_5:108924410-108924794:+|nuORF;ENST00000527480.1_1_11:6015523-6015940:-|nuORF;CON__H-INV:HIT000015463;ENST00000434763.1_1_X:152869982-152870534:-|nuORF;ENST00000396959.2_1_3:12829056-12829584:-|nuORF;ENST00000439811.1_1_6:112683280-112683757:-|nuORF;ENST00000515347.2_1_5:79584647-79585058:+|nuORF;ENST00000398525.2_1_2:65894186-65894534:+|nuORF;ENST00000452408.1_1_6:28937434-28937611:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa99_classI_Rep5	1	587.8168334960938	2	587.813719	1173.61288	3.0309	0.0017816	-0.76154	-0.00044765	2.2693	0.0013339	587.8130874991738	97.782	0.80882	97.782	97.438	98.247	0					39	18	3	0	0	0	0.27679	1	10745	10745		83.647	16.153	1	2383200			56162	2808	46366	46407	61380	61380					0.03302236512581658
TEIEALKEEL	10	Unmodified	_TEIEALKEEL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF;ENST00000581937.1_1_18:9678609-9679128:-|nuORF;ENST00000505048.1_1_5:108924410-108924794:+|nuORF;ENST00000527480.1_1_11:6015523-6015940:-|nuORF;CON__H-INV:HIT000015463;ENST00000434763.1_1_X:152869982-152870534:-|nuORF;ENST00000396959.2_1_3:12829056-12829584:-|nuORF;ENST00000439811.1_1_6:112683280-112683757:-|nuORF;ENST00000515347.2_1_5:79584647-79585058:+|nuORF;ENST00000398525.2_1_2:65894186-65894534:+|nuORF;ENST00000452408.1_1_6:28937434-28937611:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa9_classI_Rep2	2	587.8128051757812	2	587.813719	1173.61288	-0.73304	-0.00043089	0.79011	0.00046444	0.057069	3.3546E-05	587.8136200985748	98.473	2.676	97.58	97.168	99.844	-0.89305					151	53	7	0	0	0	2.6939E-07	7	8951	8935;8939;8945;8951;8957;8963;8971		213.85	81.092	1	1184300			56163	2808	46366	46407	61381;61382;61383;61384;61385;61386;61387	61384					0.03302236512581658
TEIEALKEEL	10	Unmodified	_TEIEALKEEL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF;ENST00000581937.1_1_18:9678609-9679128:-|nuORF;ENST00000505048.1_1_5:108924410-108924794:+|nuORF;ENST00000527480.1_1_11:6015523-6015940:-|nuORF;CON__H-INV:HIT000015463;ENST00000434763.1_1_X:152869982-152870534:-|nuORF;ENST00000396959.2_1_3:12829056-12829584:-|nuORF;ENST00000439811.1_1_6:112683280-112683757:-|nuORF;ENST00000515347.2_1_5:79584647-79585058:+|nuORF;ENST00000398525.2_1_2:65894186-65894534:+|nuORF;ENST00000452408.1_1_6:28937434-28937611:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa9_classI_Rep3	3	587.8143920898438	2	587.813719	1173.61288	-1.7926	-0.0010537	2.375	0.0013961	0.58247	0.00034239	587.8144520502224	99.263	2.672	97.578	96.904	99.576	-1.685					161	52	8	0	0	0	2.0348E-09	5	6672	6661;6666;6672;6678;6685		237.92	101.66	1	1410200			56164	2808	46366	46407	61388;61389;61390;61391;61392	61390					0.03302236512581658
TEIEALKEEL	10	Unmodified	_TEIEALKEEL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF;ENST00000581937.1_1_18:9678609-9679128:-|nuORF;ENST00000505048.1_1_5:108924410-108924794:+|nuORF;ENST00000527480.1_1_11:6015523-6015940:-|nuORF;CON__H-INV:HIT000015463;ENST00000434763.1_1_X:152869982-152870534:-|nuORF;ENST00000396959.2_1_3:12829056-12829584:-|nuORF;ENST00000439811.1_1_6:112683280-112683757:-|nuORF;ENST00000515347.2_1_5:79584647-79585058:+|nuORF;ENST00000398525.2_1_2:65894186-65894534:+|nuORF;ENST00000452408.1_1_6:28937434-28937611:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa9_classI_Rep4_	4	587.8141479492188	2	587.813719	1173.61288	-1.1884	-0.00069859	0.64714	0.0003804	-0.54131	-0.00031819	587.8140390434944	99.717	2.2884	97.391	97.108	99.396	-2.3253					101	45	3	0	0	0	1.2281E-07	4	8900	8889;8900;8912;8925		223.32	85.258	1	1364200			56165	2808	46366	46407	61393;61394;61395;61396	61394					0.03302236512581658
TEIEDSHTL	9	Unmodified	_TEIEDSHTL_					0	0	0		TBRG4|p.I596Dfs*8|1|0.09|ENSG00000136270|chr7:45101267-45101268|-/T|frameshift_variant;ENSG00000136270|ENST00000258770|TBRG4;ENST00000488222.5_1_7:45142883-45145249:-|nuORF;nc|ENSG00000136270|Q969Z0-2|TBRG4	TBRG4|p.I596Dfs*8|1|0.09|ENSG00000136270|chr7:45101267-45101268|-/T|frameshift_variant;nc|ENSG00000136270|Q969Z0-2|TBRG4	TBRG4|p.I596Dfs*8|1|0.09|ENSG00000136270|chr7:45101267-45101268|-/T|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	522.7471313476562	2	522.745836	1043.47712	-0.62353	-0.00032595	0.25908	0.00013544	-0.36444	-0.00019051	522.7458658251741	58.681	0.48635	58.681	58.446	58.932	0					30	11	4	0	0	0	0.042513	1	4999	4999		124.59	25.219	1	1941700			56166	4479;15036	46367	46408	61397	61397					-0.04288038278218664
TEIEGNEL	8	Unmodified	_TEIEGNEL_					0	0	0			REV__ENSG00000101474|ENST00000217456|APMAP	REV__ENSG00000101474|ENST00000217456|APMAP	MULTI-MSMS	OvCa9_classI_Rep4_	4	452.7175598144531	2	452.716547	903.418542	-0.049401	-2.2364E-05	0.34551	0.00015642	0.2961	0.00013405	452.71657848562944	70.472	1.992	66.991	66.639	68.631	-3.4812					90	40	4	0	0	0	0.17531	2	5330	5320;5330		128.86	0	1	992930	+		56167	17504	46368	46409	61398;61399	61399					-0.03703094852698996
TEIEGNEL	8	Unmodified	_TEIEGNEL_					0	0	0			REV__ENSG00000101474|ENST00000217456|APMAP	REV__ENSG00000101474|ENST00000217456|APMAP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	452.716547	903.418542	1.7413	0.00078829	-1.5492	-0.00070136	0.19202	8.693E-05	452.71572194697205	69.883	1.7111	67.312	66.715	68.426	-2.5707	0.16047	-0.00035974	NaN	128.86	75	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	159480	+		56168	17504	46368	46409							-0.03703094852698996
TEIEGTQKL	9	Unmodified	_TEIEGTQKL_					0	0	0		nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B	nc|ENSG00000120899|Q14289-2|PTK2B	nc|ENSG00000120899|Q14289-2|PTK2B	MULTI-MSMS	OvCa99_classI_Rep5	1	509.77545166015625	2	509.774396	1017.53424	-0.0064262	-3.2759E-06	0.054513	2.7789E-05	0.048086	2.4513E-05	509.7742426361386	56.738	0.8558	56.738	56.498	57.353	0					56	19	5	0	0	0	0.0086488	1	4724	4724		176.09	55.466	1	2381000			56169	3458	46369	46410	61400	61400					0.026174289981327092
TEIEGTQKL	9	Unmodified	_TEIEGTQKL_					0	0	0		nc|ENSG00000120899|Q14289-2|PTK2B;ENSG00000120899|ENST00000346049|PTK2B	nc|ENSG00000120899|Q14289-2|PTK2B	nc|ENSG00000120899|Q14289-2|PTK2B	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.7746887207031	2	509.774396	1017.53424	0.10372	5.2872E-05	-0.39508	-0.0002014	-0.29137	-0.00014853	509.77415182011396	60.213	1.6289	56.783	56.456	58.084	-3.43					99	32	5	0	0	0	0.0094524	4	4070	4058;4070;4083;4095		171.38	45.571	1	1263700			56170	3458	46369	46410	61401;61402;61403;61404	61402					0.026174289981327092
TEIEKARAV	9	Unmodified	_TEIEKARAV_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.79022216796875	2	508.790381	1015.56621	-1.3106	-0.00066683	2.3579	0.0011997	1.0473	0.00053287	508.7907484172839	43.312	1.1848	40.304	39.853	41.038	-3.0074					45	22	3	0	0	0	0.21231	1	2075	2075		74.255	2.3776	1	375280			56171	5429	46370	46411	61405	61405					0.059048414719427456
TEIELLLK	8	Unmodified	_TEIELLLK_					0	0	0		tr|A0A553SNY2|A0A553SNY2_NIACISwarmingmotilityproteinSwrBOS=NialliacirculansOX=1397GN=CEQ21_25360PE=4SV=1	tr|A0A553SNY2|A0A553SNY2_NIACISwarmingmotilityproteinSwrBOS=NialliacirculansOX=1397GN=CEQ21_25360PE=4SV=1	tr|A0A553SNY2|A0A553SNY2_NIACISwarmingmotilityproteinSwrBOS=NialliacirculansOX=1397GN=CEQ21_25360PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	479.7931213378906	2	479.794601	957.574648	-0.12373	-5.9366E-05	-2.9504	-0.0014156	-3.0741	-0.0014749	479.79304439694977	47.401	0.55988	47.401	47.121	47.681	0					28	12	3	0	0	0	0.64026	1	3408	3408		55.504	0.72789	1	1117000			56172	33977	46371	46412	61406	61406					0.09416395388575438
TEIELLLK	8	Unmodified	_TEIELLLK_					0	0	0		tr|A0A553SNY2|A0A553SNY2_NIACISwarmingmotilityproteinSwrBOS=NialliacirculansOX=1397GN=CEQ21_25360PE=4SV=1	tr|A0A553SNY2|A0A553SNY2_NIACISwarmingmotilityproteinSwrBOS=NialliacirculansOX=1397GN=CEQ21_25360PE=4SV=1	tr|A0A553SNY2|A0A553SNY2_NIACISwarmingmotilityproteinSwrBOS=NialliacirculansOX=1397GN=CEQ21_25360PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	479.794601	957.574648	-1.29	-0.00061894	-1.6075	-0.00077128	-2.8975	-0.0013902	479.7939257006004	50.2	0.39783	47.406	47.083	47.48	-2.794	0.049368	0.00069523	NaN	55.504	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18009			56173	33977	46371	46412							0.09416395388575438
TEIELLLK	8	Unmodified	_TEIELLLK_					0	0	0		tr|A0A553SNY2|A0A553SNY2_NIACISwarmingmotilityproteinSwrBOS=NialliacirculansOX=1397GN=CEQ21_25360PE=4SV=1	tr|A0A553SNY2|A0A553SNY2_NIACISwarmingmotilityproteinSwrBOS=NialliacirculansOX=1397GN=CEQ21_25360PE=4SV=1	tr|A0A553SNY2|A0A553SNY2_NIACISwarmingmotilityproteinSwrBOS=NialliacirculansOX=1397GN=CEQ21_25360PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	479.794601	957.574648	-1.3728	-0.00065864	-0.56773	-0.0002724	-1.9405	-0.00093104	479.794178980758	50.404	0.41675	47.262	47.079	47.496	-3.1416	-0.094009	0.001693	NaN	55.504	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30487			56174	33977	46371	46412							0.09416395388575438
TEIFKEDIE	9	Unmodified	_TEIFKEDIE_					0	0	0		tr|A0A7D6VP05|A0A7D6VP05_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14755PE=4SV=1	tr|A0A7D6VP05|A0A7D6VP05_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14755PE=4SV=1	tr|A0A7D6VP05|A0A7D6VP05_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14755PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	562.2789916992188	2	562.279512	1122.54447	-1.1412	-0.00064166	-1.6257	-0.0009141	-2.7669	-0.0015558	562.2798071274417	100.79	1.6524	99.186	98.898	100.55	-1.6053					111	31	6	0	0	0	0.26076	1	6846	6846		67.494	3.9598	1	455050			56175	34742	46372	46413	61407	61407					-0.011900080673058255
TEIGFILQS	9	Unmodified	_TEIGFILQS_					0	0	0		tr|A0A553SJB2|A0A553SJB2_NIACIAldehydedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16455PE=3SV=1	tr|A0A553SJB2|A0A553SJB2_NIACIAldehydedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16455PE=3SV=1	tr|A0A553SJB2|A0A553SJB2_NIACIAldehydedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16455PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.26263427734375	2	504.274032	1006.53351	0.46681	0.0002354	2.9269	0.0014759	3.3937	0.0017113	504.2758060402786	72.394	0.2002	72.394	72.333	72.533	0					6	4	2	0	0	0	0.027462	1	7042	7042		31.53	3.6476	1	269590			56176	33486	46373	46414	61408	61408					0.030506343490856125
TEIGKDVIGL	10	Unmodified	_TEIGKDVIGL_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	OvCa99_classI_Rep5	1	522.8023071289062	2	522.800414	1043.58628	2.5045	0.0013093	0.4768	0.00024927	2.9813	0.0015586	522.8001406429802	97.286	0.81387	97.286	96.966	97.78	0					28	18	2	0	0	0	0.29438	1	10681	10681		81.525	8.9051	1	5122000			56177	3523	46374	46415	61409	61409					0.06622592411895312
TEIHKELI	8	Unmodified	_TEIHKELI_					0	0	0			REV__nc|ENSG00000139746|Q5T8P6-5|RBM26	REV__nc|ENSG00000139746|Q5T8P6-5|RBM26	MULTI-MSMS	OvCa99_classI_Rep5	1	491.7827453613281	2	491.782025	981.549496	1.063	0.00052277	1.0571	0.00051985	2.1201	0.0010426	491.7824558101613	83.485	1.5113	83.485	83.078	84.589	0					84	35	4	0	0	0	0.45246	1	8669	8669		82.305	13.518	1	8217800	+		56178	19634	46375	46416	61410	61410					0.05798340585999995
TEIHKELI	8	Unmodified	_TEIHKELI_					0	0	0			REV__nc|ENSG00000139746|Q5T8P6-5|RBM26	REV__nc|ENSG00000139746|Q5T8P6-5|RBM26	MULTI-MSMS	OvCa9_classI_Rep4_	4	491.78289794921875	2	491.782025	981.549496	1.5031	0.00073919	-1.8634	-0.00091637	-0.36029	-0.00017719	491.78083223671564	86.065	2.4404	83.419	82.993	85.434	-2.6463					136	48	5	0	0	0	0.40148	2	7267	7267;7293		87.754	5.4493	1	1191800	+		56179	19634	46375	46416	61411;61412	61411					0.05798340585999995
TEIHVTPDE	9	Unmodified	_TEIHVTPDE_					0	0	0			REV__tr|A0A553SL11|A0A553SL11_NIACITyrosinerecombinaseXerDOS=NialliacirculansOX=1397GN=xerDPE=3SV=1	REV__tr|A0A553SL11|A0A553SL11_NIACITyrosinerecombinaseXerDOS=NialliacirculansOX=1397GN=xerDPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.76806640625	2	520.748379	1039.4822	-0.11905	-6.1995E-05	-4.2345	-0.0022051	-4.3536	-0.0022671	520.7463087810893	74.001	0.4178	74.001	73.717	74.135	0					19	10	4	0	0	0	0.027462	1	7294	7294		29.15	4.6304	1	1263900	+		56180	30173	46376	46417	61413	61413					-0.03595734415625884
TEILQADLL	9	Unmodified	_TEILQADLL_					0	0	0		nc|ENSG00000091181|Q01344-5|IL5RA;nc|ENSG00000091181|Q01344-3|IL5RA;nc|ENSG00000091181|Q01344-2|IL5RA;nc|ENSG00000091181|Q01344-4|IL5RA;ENSG00000091181|ENST00000446632|IL5RA	nc|ENSG00000091181|Q01344-5|IL5RA	nc|ENSG00000091181|Q01344-5|IL5RA	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.2857360839844	2	508.28714	1014.55973	-0.49683	-0.00025253	0.026341	1.3389E-05	-0.47049	-0.00023915	508.2869980359907	83.135	1.0705	80.452	80.076	81.147	-2.6829					56	17	5	0	0	0	0.045281	1	6921	6921		122.18	14.088	1	961900			56181	1868	46377	46418	61414	61414					0.05302903520566815
TEINITKTTI	10	Unmodified	_TEINITKTTI_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;DSP|p.R1308Pfs*18|1|0.56|ENSG00000096696|chr6:7580109-7580110|-/C|frameshift_variant;DSP|p.R1725Qfs*9|1|0.06|ENSG00000096696|chr6:7581363-7581364|-/A|frameshift_variant	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.3219604492188	2	567.324254	1132.63395	1.9119	0.0010847	4.0341	0.0022887	5.9461	0.0033733	567.3262110692925	86.537	0.34039	83.91	83.762	84.103	-2.6269					9	6	2	0	0	0	0.026916	1	7305	7305		43.651	15.769	1	15444			56182	1949	46378	46419	61415	61415					0.07294246612082134
TEIPNFKV	8	Unmodified	_TEIPNFKV_					0	0	0			REV__ENSG00000164934|ENST00000612750|DCAF13	REV__ENSG00000164934|ENST00000612750|DCAF13	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.272216796875	2	474.263468	946.512382	0.45259	0.00021465	-0.42061	-0.00019948	0.031979	1.5166E-05	474.2627909150861	77.729	1.1095	74.912	74.632	75.742	-2.8165					40	22	3	0	0	0	0.028476	1	6325	6325		40.573	0	1	83091	+		56183	21039	46379	46420	61416	61416					0.03698669040238656
TEIQLVQSL	9	Unmodified	_TEIQLVQSL_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	OvCa9_classI_Rep2	2	515.7926635742188	2	515.792589	1029.57063	-0.78304	-0.00040389	0.44718	0.00023065	-0.33586	-0.00017323	515.7927187364921	120.88	1.4824	120.68	120.36	121.84	-0.19718					73	29	3	0	0	0	0.38969	2	11663	11663;11674		52.937	3.108	1	156340			56184	3124	46380	46421	61417;61418	61417					0.057023058948516336
TEIQLVQSL	9	Unmodified	_TEIQLVQSL_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7916259765625	2	515.792589	1029.57063	-0.27379	-0.00014122	0.021588	1.1135E-05	-0.2522	-0.00013008	515.7924868825856	121.83	1.5653	120.48	120.21	121.77	-1.3479					77	30	4	0	0	0	0.21284	2	11487	11487;11528		74.165	8.6996	1	178230			56185	3124	46380	46421	61419;61420	61419					0.057023058948516336
TEISEMNWNI	10	Unmodified	_TEISEMNWNI_					0	0	0		CON__H-INV:HIT000292931	CON__H-INV:HIT000292931	CON__H-INV:HIT000292931	MULTI-MSMS	OvCa9_classI_Rep4_	4	618.7828979492188	2	618.781896	1235.54924	0.32628	0.0002019	2.3298	0.0014416	2.6561	0.0016435	618.7831283157261	112.93	1.0365	111.48	111.11	112.15	-1.4461					51	20	3	0	0	0	0.44722	1	10452	10452		61.691	10.499	1	133400		+	56186	610	46381	46422	61421	61421					-0.05911447196172048
TEISEMNWNI	10	Unmodified	_TEISEMNWNI_					0	0	0		CON__H-INV:HIT000292931	CON__H-INV:HIT000292931	CON__H-INV:HIT000292931	MULTI-MATCH	OvCa9_classI_Rep2	2		2	618.781896	1235.54924	-0.19167	-0.0001186	3.0062	0.0018602	2.8145	0.0017416	618.7835025745152	111.75	1.0843	111.62	111.13	112.21	-0.13961	0.13718	0.0016972	NaN	61.691	52	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52989		+	56187	610	46381	46422							-0.05911447196172048
TEISEMNWNI	10	Unmodified	_TEISEMNWNI_					0	0	0		CON__H-INV:HIT000292931	CON__H-INV:HIT000292931	CON__H-INV:HIT000292931	MULTI-MATCH	OvCa9_classI_Rep3	3		2	618.781896	1235.54924	2.8482	0.0017624	-0.1216	-7.5244E-05	2.7266	0.0016872	618.7815864033355	112.41	0.93499	111.34	111.07	112.01	-1.0753	-0.14161	-0.0021736	NaN	61.691	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124130		+	56188	610	46381	46422							-0.05911447196172048
TEISLVLEL	9	Unmodified	_TEISLVLEL_					0	0	0		ENSG00000152495|ENST00000282356|CAMK4;ENST00000509408.5_1_5:110560181-110752227:+|nuORF;ENST00000505763.1_1_5:110693774-110785459:+|nuORF	ENSG00000152495|ENST00000282356|CAMK4	ENSG00000152495|ENST00000282356|CAMK4	MULTI-MSMS	OvCa9_classI_Rep3	3	508.7969970703125	2	508.79734	1015.58013	0.81848	0.00041644	0.36434	0.00018538	1.1828	0.00060181	508.79733973449856	111.11	1.4395	110.01	109.65	111.09	-1.1038					68	28	3	0	0	0	0.55588	1	8063	8063		37.159	0	1	372870			56189	5628	46382	46423	61422	61422					0.07296074180374035
TEISSAEKVAL	11	Unmodified	_TEISSAEKVAL_					0	0	0		ENSG00000047849|ENST00000683076|MAP4;nc|ENSG00000047849|P27816-6|MAP4;nc|ENSG00000047849|P27816|MAP4;nc|ENSG00000047849|P27816-2|MAP4	ENSG00000047849|ENST00000683076|MAP4	ENSG00000047849|ENST00000683076|MAP4	MULTI-MSMS	OvCa99_classI_Rep5	1	574.3158569335938	2	574.313886	1146.61322	1.3129	0.00075402	0.87807	0.00050429	2.191	0.0012583	574.3142537746401	79.349	0.91227	79.349	79.119	80.031	0					59	22	4	0	0	0	0.1379	2	8108	8078;8108		89.029	3.167	1	7716300			56190	1151	46383	46424	61423;61424	61424					0.04577656232436311
TEITHAVVI	9	Unmodified	_TEITHAVVI_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	OvCa9_classI_Rep2	2	491.78167724609375	2	491.782025	981.549496	-0.96888	-0.00047648	0.50767	0.00024966	-0.46121	-0.00022681	491.7821166855375	85.065	2.7262	83.519	82.95	85.676	-1.5462					113	53	3	0	0	0	0.055688	3	7337	7315;7337;7343		115.46	38.612	1	636350			56191	8130	46384	46425	61425;61426;61427	61426					0.057983405859772574
TEITHAVVI	9	Unmodified	_TEITHAVVI_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	OvCa9_classI_Rep3	3	491.7828063964844	2	491.782025	981.549496	-1.3736	-0.00067551	1.225	0.00060241	-0.14865	-7.3101E-05	491.78231059263607	85.701	2.7769	83.481	82.937	85.714	-2.2204					157	54	6	0	0	0	0.18193	2	5053	5046;5053		79.451	8.1716	1	1138800			56192	8130	46384	46425	61428;61429	61429					0.057983405859772574
TEITHAVVI	9	Unmodified	_TEITHAVVI_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL;ENST00000565932.5_1_16:28734455-28746831:+|nuORF	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	491.782025	981.549496	1.5031	0.00073919	-1.8634	-0.00091637	-0.36029	-0.00017719	491.78083223671564	86.065	2.4404	83.419	82.993	85.434	-2.6463	-0.057187	-0.0024084	NaN	115.46	136	48	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1191800			56193	8130	46384	46425							0.057983405859772574
TEIVPATLH	9	Unmodified	_TEIVPATLH_					0	0	0		ENST00000405418.2_1_6:26202635-26202878:+|nuORF	ENST00000405418.2_1_6:26202635-26202878:+|nuORF	ENST00000405418.2_1_6:26202635-26202878:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	490.7737731933594	2	490.7742	979.533846	2.0698	0.0010158	-2.2674	-0.0011128	-0.19759	-9.697E-05	490.77300710457405	90.601	2.1684	89.299	88.879	91.048	-1.302					68	41	3	0	0	0	0.25214	1	7999	7999		68.485	10.673	1	702090			56194	11464	46385	46426	61430	61430					0.04326054068940266
TEIYLVHFI	9	Unmodified	_TEIYLVHFI_					0	0	0		ENST00000452973.6_1_6:142540853-142541078:+|nuORF	ENST00000452973.6_1_6:142540853-142541078:+|nuORF	ENST00000452973.6_1_6:142540853-142541078:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	567.8107299804688	2	567.813325	1133.6121	0.016962	9.6314E-06	-3.7397	-0.0021235	-3.7228	-0.0021138	567.811208678959	114.23	1.3057	113.18	112.79	114.09	-1.055					67	25	3	0	0	0	0.50066	1	8448	8448		42.474	6.8562	1	291700			56195	12060	46386	46427	61431	61431					0.050634866541713563
TEIYRIVS	8	Unmodified	_TEIYRIVS_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B;RAB11B|p.K179Q|1|0.07|ENSG00000185236|chr19:8403436-8403436|A/C|missense_variant	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	MULTI-MSMS	OvCa9_classI_Rep2	2	490.7738037109375	2	490.7742	979.533846	2.0698	0.0010158	-2.2674	-0.0011128	-0.19759	-9.697E-05	490.77300710457405	90.601	2.1684	89.299	88.879	91.048	-1.302					68	41	3	0	0	0	0.39692	1	8003	8003		88.643	0	1	702090			56196	2341	46387	46428	61432	61432					0.04326054068951635
TEKAVNLLPK	10	Unmodified	_TEKAVNLLPK_					0	0	0			REV__ENST00000565387.2_1_15:66782707-66784420:-|nuORF	REV__ENST00000565387.2_1_15:66782707-66784420:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.3111572265625	2	556.837331	1111.66011	1.1807	0.00065747	-1.3617	-0.00075826	-0.18099	-0.00010078	556.8367513963423	113.87	1.2768	112.43	112.24	113.52	-1.4461					58	24	3	0	0	0	0.027225	1	10576	10576		85.161	26.931	1	144930	+		56197	27682	46388	46429	61433	61433					0.108745605742115
TEKCKQIAQ	9	Unmodified	_TEKCKQIAQ_					0	0	0		nc|ENSG00000159140|P18583-2|SON;nc|ENSG00000159140|P18583-10|SON;nc|ENSG00000159140|P18583-3|SON;nc|ENSG00000159140|P18583-4|SON;nc|ENSG00000159140|P18583-7|SON;ENSG00000159140|ENST00000356577|SON;nc|ENSG00000159140|P18583-5|SON;nc|ENSG00000159140|P18583-9|SON	nc|ENSG00000159140|P18583-2|SON	nc|ENSG00000159140|P18583-2|SON	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7554931640625	2	524.776416	1047.53828	-0.71729	-0.00037642	-2.8866	-0.0015148	-3.6039	-0.0018912	524.7748188036801	54.316	0.49907	54.316	54.048	54.547	0					32	11	4	0	0	0	0.027411	1	4393	4393		58.23	0	1	1134300			56198	5987	46389	46430	61434	61434					0.016411952201906388
TEKDLIPYL	9	Unmodified	_TEKDLIPYL_					0	0	0		SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant;ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96948912-96949730:-|nuORF	SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.3028564453125	2	546.30279	1090.59103	-0.16813	-9.1851E-05	-0.62266	-0.00034016	-0.79079	-0.00043201	546.3023688803465	115.73	1.3472	114.33	113.97	115.32	-1.3977					59	26	3	0	0	0	0.28934	1	10779	10779		64.207	8.7031	1	197030			56199	5119	46390	46431	61435	61435					0.04935476554669549
TEKDLVTSL	9	Unmodified	_TEKDLVTSL_					0	0	0		P4HA1|p.L114Nfs*2|1|0.07|ENSG00000122884|chr10:73068969-73068970|-/TT|frameshift_variant;P4HA1|p.L114Sfs*9|1|0.07|ENSG00000122884|chr10:73068970-73068971|-/ATGTGCTCATATGGTATCCTGAA|frameshift_variant;P4HA1|p.E329Dfs*3|1|0.05|ENSG00000122884|chr10:73047015-73047016|-/A|frameshift_variant;nc|ENSG00000122884|P13674-3|P4HA1;nc|ENSG00000122884|P13674-2|P4HA1;ENSG00000122884|ENST00000394890|P4HA1	P4HA1|p.L114Nfs*2|1|0.07|ENSG00000122884|chr10:73068969-73068970|-/TT|frameshift_variant	P4HA1|p.L114Nfs*2|1|0.07|ENSG00000122884|chr10:73068969-73068970|-/TT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	503.2756652832031	2	503.276772	1004.53899	-0.54852	-0.00027606	0.50567	0.00025449	-0.042853	-2.1567E-05	503.27694756734815	83.166	2.65	81.567	80.697	83.347	-1.5988					153	52	4	0	0	0	0.011767	10	7132	7086;7114;7120;7126;7132;7139;7145;7151;7158;7165		163.15	46.247	1	1493300			56200	3564	46391	46432	61436;61437;61438;61439;61440;61441;61442;61443;61444;61445	61440					0.03690313140930357
TEKDLVTSL	9	Unmodified	_TEKDLVTSL_					0	0	0		P4HA1|p.L114Nfs*2|1|0.07|ENSG00000122884|chr10:73068969-73068970|-/TT|frameshift_variant;P4HA1|p.L114Sfs*9|1|0.07|ENSG00000122884|chr10:73068970-73068971|-/ATGTGCTCATATGGTATCCTGAA|frameshift_variant;P4HA1|p.E329Dfs*3|1|0.05|ENSG00000122884|chr10:73047015-73047016|-/A|frameshift_variant;nc|ENSG00000122884|P13674-3|P4HA1;nc|ENSG00000122884|P13674-2|P4HA1;ENSG00000122884|ENST00000394890|P4HA1	P4HA1|p.L114Nfs*2|1|0.07|ENSG00000122884|chr10:73068969-73068970|-/TT|frameshift_variant	P4HA1|p.L114Nfs*2|1|0.07|ENSG00000122884|chr10:73068969-73068970|-/TT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	503.27740478515625	2	503.276772	1004.53899	-1.4219	-0.00071562	0.90336	0.00045464	-0.51856	-0.00026098	503.277192861843	83.429	3.0789	81.168	80.816	83.895	-2.261					157	63	4	0	0	0	0.011767	11	4795	4749;4752;4758;4764;4770;4777;4783;4790;4795;4801;4808		163.15	58.404	1	3985500			56201	3564	46391	46432	61446;61447;61448;61449;61450;61451;61452;61453;61454;61455;61456	61454					0.03690313140930357
TEKDLVTSL	9	Unmodified	_TEKDLVTSL_					0	0	0		P4HA1|p.L114Nfs*2|1|0.07|ENSG00000122884|chr10:73068969-73068970|-/TT|frameshift_variant;P4HA1|p.L114Sfs*9|1|0.07|ENSG00000122884|chr10:73068970-73068971|-/ATGTGCTCATATGGTATCCTGAA|frameshift_variant;P4HA1|p.E329Dfs*3|1|0.05|ENSG00000122884|chr10:73047015-73047016|-/A|frameshift_variant;nc|ENSG00000122884|P13674-3|P4HA1;nc|ENSG00000122884|P13674-2|P4HA1;ENSG00000122884|ENST00000394890|P4HA1	P4HA1|p.L114Nfs*2|1|0.07|ENSG00000122884|chr10:73068969-73068970|-/TT|frameshift_variant	P4HA1|p.L114Nfs*2|1|0.07|ENSG00000122884|chr10:73068969-73068970|-/TT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.27777099609375	2	503.276772	1004.53899	0.10902	5.4868E-05	-0.08509	-4.2824E-05	0.023931	1.2044E-05	503.27665317528556	84.071	2.3968	81.408	80.779	83.176	-2.6629					139	49	4	0	0	0	0.012051	7	7022	7022;7034;7047;7058;7070;7083;7095		162.25	57.506	1	3611400			56202	3564	46391	46432	61457;61458;61459;61460;61461;61462;61463	61457					0.03690313140930357
TEKEDFIEL	9	Unmodified	_TEKEDFIEL_					0	0	0		nc|ENSG00000113580|P04150-13|NR3C1;nc|ENSG00000113580|P04150-12|NR3C1;nc|ENSG00000113580|P04150-11|NR3C1;nc|ENSG00000113580|P04150-9|NR3C1;nc|ENSG00000113580|P04150-2|NR3C1;nc|ENSG00000113580|P04150-6|NR3C1;nc|ENSG00000113580|P04150-8|NR3C1;nc|ENSG00000113580|P04150-10|NR3C1;ENSG00000113580|ENST00000394464|NR3C1;nc|ENSG00000113580|P04150-3|NR3C1;nc|ENSG00000113580|P04150-7|NR3C1;nc|ENSG00000113580|P04150-5|NR3C1	nc|ENSG00000113580|P04150-13|NR3C1	nc|ENSG00000113580|P04150-13|NR3C1	MULTI-MSMS	OvCa9_classI_Rep2	2	562.2779541015625	2	562.279512	1122.54447	-0.51652	-0.00029043	0.15567	8.753E-05	-0.36085	-0.0002029	562.2794588970121	100.06	1.5866	99.232	98.865	100.45	-0.83051					67	31	3	0	0	0	0.094791	1	9143	9143		98.582	21.264	1	328030			56203	2977	46392	46433	61464	61464					-0.011900080672830882
TEKEDFIEL	9	Unmodified	_TEKEDFIEL_					0	0	0		nc|ENSG00000113580|P04150-13|NR3C1;nc|ENSG00000113580|P04150-12|NR3C1;nc|ENSG00000113580|P04150-11|NR3C1;nc|ENSG00000113580|P04150-9|NR3C1;nc|ENSG00000113580|P04150-2|NR3C1;nc|ENSG00000113580|P04150-6|NR3C1;nc|ENSG00000113580|P04150-8|NR3C1;nc|ENSG00000113580|P04150-10|NR3C1;ENSG00000113580|ENST00000394464|NR3C1;nc|ENSG00000113580|P04150-3|NR3C1;nc|ENSG00000113580|P04150-7|NR3C1;nc|ENSG00000113580|P04150-5|NR3C1	nc|ENSG00000113580|P04150-13|NR3C1	nc|ENSG00000113580|P04150-13|NR3C1	MULTI-MSMS	OvCa9_classI_Rep3	3	562.2796630859375	2	562.279512	1122.54447	-1.1412	-0.00064166	-1.6257	-0.0009141	-2.7669	-0.0015558	562.2798071274417	100.79	1.6524	99.186	98.898	100.55	-1.6053					111	31	6	0	0	0	0.043101	3	6858	6853;6858;6865		124.08	33.828	1	455050			56204	2977	46392	46433	61465;61466;61467	61466					-0.011900080672830882
TEKEDFIEL	9	Unmodified	_TEKEDFIEL_					0	0	0		nc|ENSG00000113580|P04150-13|NR3C1;nc|ENSG00000113580|P04150-12|NR3C1;nc|ENSG00000113580|P04150-11|NR3C1;nc|ENSG00000113580|P04150-9|NR3C1;nc|ENSG00000113580|P04150-2|NR3C1;nc|ENSG00000113580|P04150-6|NR3C1;nc|ENSG00000113580|P04150-8|NR3C1;nc|ENSG00000113580|P04150-10|NR3C1;ENSG00000113580|ENST00000394464|NR3C1;nc|ENSG00000113580|P04150-3|NR3C1;nc|ENSG00000113580|P04150-7|NR3C1;nc|ENSG00000113580|P04150-5|NR3C1	nc|ENSG00000113580|P04150-13|NR3C1	nc|ENSG00000113580|P04150-13|NR3C1	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.280029296875	2	562.279512	1122.54447	0.78668	0.00044234	-3.8397	-0.002159	-3.053	-0.0017167	562.2784380084108	101.41	1.4087	99.142	98.883	100.29	-2.2665					101	27	6	0	0	0	0.32653	1	9094	9094		59.931	3.2097	1	447070			56205	2977	46392	46433	61468	61468					-0.011900080672830882
TEKEKDVR	8	Unmodified	_TEKEKDVR_					0	0	0		ENSG00000179083|ENST00000683942|FAM133A;chrX:93698485-93709317|175|14.62|0.52|4.8|+|ENST00000332647|FAM133A,FAM133A	ENSG00000179083|ENST00000683942|FAM133A	ENSG00000179083|ENST00000683942|FAM133A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.2276916503906	2	502.772188	1003.52982	0.085355	4.2914E-05	2.5167	0.0012653	2.602	0.0013082	502.77332367139405	89.619	1.2486	87.044	86.656	87.904	-2.575					47	24	3	0	0	0	0.028476	1	7785	7785		16.473	0	1	62102			56206	572	46393	46434	61469	61469					0.0281996457523519
TEKHKMLN	8	Unmodified	_TEKHKMLN_					0	0	0		tr|A0A553SUC4|A0A553SUC4_NIACIAcetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_06740PE=3SV=1	tr|A0A553SUC4|A0A553SUC4_NIACIAcetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_06740PE=3SV=1	tr|A0A553SUC4|A0A553SUC4_NIACIAcetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_06740PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	500.7678527832031	2	500.765852	999.51715	1.5175	0.00075992	1.5161	0.0007592	3.0336	0.0015191	500.7664716185698	148.57	0.59261	148.57	148.32	148.92	0					25	11	4	0	0	0	0.65062	1	17410	17410		53.351	3.3269	1	151350			56207	34593	46394	46435	61470	61470					0.017372299113617373
TEKIISAEL	9	Unmodified	_TEKIISAEL_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-MSMS	OvCa9_classI_Rep2	2	502.2862243652344	2	502.28714	1002.55973	-1.5056	-0.00075625	1.2215	0.00061354	-0.28412	-0.00014271	502.28761752348527	84.149	2.0077	82.602	81.738	83.745	-1.5462					102	36	4	0	0	0	0.094791	1	7236	7236		98.582	13.421	1	468740			56208	1495	46395	46436	61471	61471					0.05854903520571497
TEKIISAEL	9	Unmodified	_TEKIISAEL_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-MSMS	OvCa9_classI_Rep3	3	502.288330078125	2	502.28714	1002.55973	-1.4406	-0.00072361	1.0515	0.00052816	-0.38912	-0.00019545	502.2875527369838	84.598	1.8708	82.337	81.974	83.845	-2.261					101	37	4	0	0	0	0.051592	4	4914	4910;4914;4920;4927		117.81	13.143	1	654570			56209	1495	46395	46436	61472;61473;61474;61475	61473					0.05854903520571497
TEKKEIAIL	9	Unmodified	_TEKKEIAIL_					0	0	0		ENSG00000260916|ENST00000442196|CCPG1;nc|ENSG00000260916|Q9ULG6-4|CCPG1;nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1	ENSG00000260916|ENST00000442196|CCPG1	ENSG00000260916|ENST00000442196|CCPG1	MULTI-MSMS	OvCa9_classI_Rep2	2	522.8177490234375	2	522.818607	1043.62266	-0.073553	-3.8455E-05	-0.96675	-0.00050543	-1.0403	-0.00054389	522.8181731834808	67.133	1.5314	64.472	64.099	65.631	-2.661					80	30	4	0	0	0	0.13504	5	5232	5225;5232;5238;5242;5249		87.696	24.936	1	949510			56210	9497	46396	46437	61476;61477;61478;61479;61480	61477					0.1025946930860755
TEKKEIAIL	9	Unmodified	_TEKKEIAIL_					0	0	0		ENSG00000260916|ENST00000442196|CCPG1;nc|ENSG00000260916|Q9ULG6-4|CCPG1;nc|ENSG00000260916|Q9ULG6-2|CCPG1;ENST00000568372.5_1_15:55651699-55664264:-|nuORF;nc|ENSG00000260916|Q9ULG6|CCPG1	ENSG00000260916|ENST00000442196|CCPG1	ENSG00000260916|ENST00000442196|CCPG1	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.8192749023438	2	522.818607	1043.62266	0.63133	0.00033007	-1.3443	-0.00070281	-0.71294	-0.00037274	522.8178461294611	67.992	0.97702	64.502	64.186	65.163	-3.4902					52	19	3	0	0	0	0.11471	2	5038	5013;5038		93.195	20.742	1	1153300			56211	9497	46396	46437	61481;61482	61482					0.1025946930860755
TEKLIFSL	8	Unmodified	_TEKLIFSL_					0	0	0		nc|ENSG00000071967|Q53TN4-3|CYBRD1;ENSG00000071967|ENST00000321348|CYBRD1	nc|ENSG00000071967|Q53TN4-3|CYBRD1	nc|ENSG00000071967|Q53TN4-3|CYBRD1	MULTI-MSMS	OvCa9_classI_Rep2	2	475.78131103515625	2	475.781493	949.548434	-0.25936	-0.0001234	0.41069	0.0001954	0.15132	7.1997E-05	475.78148044499807	114.5	2.4208	114.38	113.96	116.38	-0.11777					99	48	4	0	0	0	0.27528	9	10884	10884;10889;10893;10900;10906;10913;10919;10925;10931		111.65	29.343	1	319130			56212	1459	46397	46438	61483;61484;61485;61486;61487;61488;61489;61490;61491	61483					0.07164126217082867
TEKLIFSL	8	Unmodified	_TEKLIFSL_					0	0	0		nc|ENSG00000071967|Q53TN4-3|CYBRD1;ENSG00000071967|ENST00000321348|CYBRD1	nc|ENSG00000071967|Q53TN4-3|CYBRD1	nc|ENSG00000071967|Q53TN4-3|CYBRD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.781494140625	2	475.781493	949.548434	0.62521	0.00029746	-0.77539	-0.00036891	-0.15018	-7.1452E-05	475.7808721778796	115.71	2.3885	114.32	113.87	116.26	-1.3977					115	46	4	0	0	0	0.20102	5	10785	10764;10774;10785;10798;10809		124.59	30.588	1	352090			56213	1459	46397	46438	61492;61493;61494;61495;61496	61494					0.07164126217082867
TEKLILPSH	9	Unmodified	_TEKLILPSH_					0	0	0		ENST00000570478.5_1_17:45099264-45126489:+|nuORF	ENST00000570478.5_1_17:45099264-45126489:+|nuORF	ENST00000570478.5_1_17:45099264-45126489:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.77001953125	2	519.303124	1036.5917	-1.0266	-0.00053312	1.3664	0.00070959	0.33981	0.00017647	519.304243741242	82.034	1.112	79.351	79.012	80.124	-2.6829					29	20	2	0	0	0	0.027462	1	6811	6811		34.173	5.9183	1	80338			56214	13898	46398	46439	61497	61497					0.07486315994378856
TEKLILPSH	9	Unmodified	_TEKLILPSH_					0	0	0		ENST00000570478.5_1_17:45099264-45126489:+|nuORF	ENST00000570478.5_1_17:45099264-45126489:+|nuORF	ENST00000570478.5_1_17:45099264-45126489:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	519.303124	1036.5917	1.1797	0.00061264	2.0637	0.0010717	3.2434	0.0016843	519.3057976474234	79.449	0.19443	79.449	79.352	79.546	0	0.048945	0.0006121	NaN	26.693	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155950			56215	13898	46398	46439							0.07486315994378856
TEKNRQWF	8	Unmodified	_TEKNRQWF_					0	0	0		nc|ENSG00000226266|Q9UIF8-4|BAZ2B;nc|ENSG00000226266|Q9UIF8-5|BAZ2B;nc|ENSG00000226266|Q9UIF8-3|BAZ2B;ENSG00000123636|ENST00000392783|BAZ2B;nc|ENSG00000226266|Q9UIF8-2|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	nc|ENSG00000226266|Q9UIF8-4|BAZ2B	MULTI-SECPEP	OvCa9_classI_Rep2	2	553.8373413085938	2	554.780348	1107.54614	-0.17662	-9.7987E-05	-2.3765	-0.0013184	-2.5531	-0.0014164	555.2822841959583	103.39	0.3455	102.7	102.53	102.87	-0.68459					9	6	2	0	0	0	0.028476	1	9523	9523		47.916	11.469	1	6708.1			56216	3610	46399	46440	61498	61498					-0.003329094680111666
TEKNVIAAL	9	Unmodified	_TEKNVIAAL_					0	0	0		nc|ENSG00000127463|Q8N766-4|EMC1;nc|ENSG00000127463|Q8N766-3|EMC1;nc|ENSG00000127463|Q8N766-2|EMC1;ENSG00000127463|ENST00000477853|EMC1;EMC1|p.Q491Hfs*45|1|0.04|ENSG00000127463|chr1:19233095-19233095|C/-|frameshift_variant;EMC1|p.S824Pfs*40|1|0.04|ENSG00000127463|chr1:19222742-19222743|-/GA|frameshift_variant	nc|ENSG00000127463|Q8N766-4|EMC1	nc|ENSG00000127463|Q8N766-4|EMC1	MULTI-MSMS	OvCa9_classI_Rep2	2	479.7826843261719	2	479.782025	957.549496	0.20049	9.6192E-05	-0.6683	-0.00032064	-0.4678	-0.00022444	479.78176555475227	82.038	1.8634	80.39	79.818	81.681	-1.6485					96	36	3	0	0	0	0.35444	1	6988	6988		56.721	0	1	969300			56217	3832	46400	46441	61499	61499					0.06902340585986622
TEKQRLRWYYL	11	Unmodified	_TEKQRLRWYYL_					0	0	0		nc|ENSG00000004948|P30988-5|CALCR;nc|ENSG00000004948|P30988-6|CALCR;nc|ENSG00000004948|P30988-3|CALCR;nc|ENSG00000004948|P30988-4|CALCR;ENSG00000004948|ENST00000426151|CALCR;nc|ENSG00000004948|P30988-1|CALCR	nc|ENSG00000004948|P30988-5|CALCR	nc|ENSG00000004948|P30988-5|CALCR	MULTI-MSMS	OvCa9_classI_Rep3	3	519.2860107421875	3	519.284175	1554.8307	-0.97435	-0.00050597	2.9045	0.0015083	1.9302	0.0010023	519.2856367243071	92.405	2.1918	90.38	90.089	92.281	-2.0241					115	44	5	0	0	0	0.7252	1	5854	5854		12.957	3.7457	1	2226400			56218	839	46401	46442	61500	61500					0.07547471225711888
TEKRDYVII	9	Unmodified	_TEKRDYVII_					0	0	0		tr|A0A7D6ZQJ5|A0A7D6ZQJ5_9CLOTsulfateadenylyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00570PE=3SV=1	tr|A0A7D6ZQJ5|A0A7D6ZQJ5_9CLOTsulfateadenylyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00570PE=3SV=1	tr|A0A7D6ZQJ5|A0A7D6ZQJ5_9CLOTsulfateadenylyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00570PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	568.8191528320312	2	568.819138	1135.62372	1.4597	0.00083029	-1.2273	-0.00069811	0.23238	0.00013218	568.818070687337	147.16	0.78038	147.16	146.87	147.65	0					36	15	3	0	0	0	0.50149	1	17212	17212		42.396	0.96952	1	90613			56219	35703	46402	46443	61501	61501					0.06133683677512636
TEKRIIEV	8	Unmodified	_TEKRIIEV_					0	0	0		ENSG00000168702|ENST00000389484|LRP1B	ENSG00000168702|ENST00000389484|LRP1B	ENSG00000168702|ENST00000389484|LRP1B	MULTI-MSMS	OvCa9_classI_Rep2	2	494.2944030761719	2	494.295299	986.576045	1.7975	0.0008885	-2.2609	-0.0011176	-0.46343	-0.00022907	494.2941466087284	90.898	1.7806	89.662	88.598	90.379	-1.2355					117	34	4	0	0	0	0.61841	1	8029	8029		60.118	1.8883	1	1147000			56220	6934	46403	46444	61502	61502					0.08222029477337855
TEKSPNPSL	9	Unmodified	_TEKSPNPSL_					0	0	0		UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant;nc|ENSG00000127481|Q5T4S7-3|UBR4;nc|ENSG00000127481|Q5T4S7-4|UBR4;ENSG00000127481|ENST00000375254|UBR4;nc|ENSG00000127481|Q5T4S7-2|UBR4;UBR4|p.Q2012Sfs*13|1|0.03|ENSG00000127481|chr1:19156309-19156310|-/A|frameshift_variant;UBR4|p.M2075Wfs*25|1|0.07|ENSG00000127481|chr1:19155519-19155519|A/-|frameshift_variant;nc|ENSG00000127481|Q5T4S7-5|UBR4;ENST00000419533.1_1_1:19477984-19504233:-|nuORF	UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.7524719238281	2	486.753464	971.492375	-1.0159	-0.00049449	0.56141	0.00027327	-0.4545	-0.00022123	486.7535291455649	50.718	1.1181	47.544	47.205	48.323	-3.1734					50	21	4	0	0	0	0.070405	1	2939	2939		107.01	24.767	1	470700			56221	3833	46404	46445	61503	61503					0.005488733096171927
TEKVITPDL	9	Unmodified	_TEKVITPDL_					0	0	0		tr|A0A7D6W1R7|A0A7D6W1R7_9CLOTGfo/Idh/MocAfamilyoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03705PE=4SV=1	tr|A0A7D6W1R7|A0A7D6W1R7_9CLOTGfo/Idh/MocAfamilyoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03705PE=4SV=1	tr|A0A7D6W1R7|A0A7D6W1R7_9CLOTGfo/Idh/MocAfamilyoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03705PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.8143615722656	2	508.28714	1014.55973	0.32191	0.00016362	1.8782	0.00095468	2.2001	0.0011183	508.28863563242294	97.771	0.20427	95.393	95.317	95.521	-2.3786					5	3	2	0	0	0	0.027345	1	8667	8667		109.48	8.2257	1	8206.8			56222	35415	46405	46446	61504	61504					0.05302903520566815
TEKVSKISL	9	Unmodified	_TEKVSKISL_					0	0	0		nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B;nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A	nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B;nc|ENSG00000130294|Q12756|KIF1A	nc|ENSG00000054523|O60333-3|KIF1B	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.8031921386719	2	502.802957	1003.59136	-0.55417	-0.00027864	0.88937	0.00044718	0.33519	0.00016854	502.80333253921077	58.867	1.3444	55.475	55.101	56.445	-3.392					70	26	4	0	0	0	0.32653	1	3903	3903		59.931	4.4266	1	380730			56223	14875;1210;3976	46406	46447	61505	61505					0.08970896274524875
TEKVSKISL	9	Unmodified	_TEKVSKISL_					0	0	0		nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B;nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A	nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B;nc|ENSG00000130294|Q12756|KIF1A	nc|ENSG00000054523|O60333-3|KIF1B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	502.802957	1003.59136	-1.0442	-0.00052503	2.0951	0.0010534	1.0509	0.00052841	502.80390013979525	58.19	1.4122	55.398	54.922	56.335	-2.792	-0.03852	0.00088816	NaN	59.931	58	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155610			56224	14875;1210;3976	46406	46447							0.08970896274524875
TELALVLSL	9	Unmodified	_TELALVLSL_					0	0	0		ENSG00000196739|ENST00000356083|COL27A1;nc|ENSG00000196739|Q8IZC6-3|COL27A1	ENSG00000196739|ENST00000356083|COL27A1	ENSG00000196739|ENST00000356083|COL27A1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.76849365234375	2	479.794601	957.574648	-0.90528	-0.00043435	-2.3474	-0.0011263	-3.2527	-0.0015606	479.7935819105176	54.959	0.81794	51.712	51.439	52.257	-3.2474					20	15	2	0	0	0	0.027462	1	3405	3405		27.882	0	1	21164			56225	8647	46407	46448	61506	61506					0.0941639538856407
TELAQSSVDLL	11	Unmodified	_TELAQSSVDLL_					0	0	0		ENST00000471572.6_1_17:29664842-29665128:+|nuORF	ENST00000471572.6_1_17:29664842-29665128:+|nuORF	ENST00000471572.6_1_17:29664842-29665128:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	588.308349609375	2	588.311343	1174.60813	-0.7509	-0.00044176	-3.0947	-0.0018207	-3.8456	-0.0022624	588.3092835787536	82.535	1.2697	79.852	79.489	80.759	-2.6829					62	25	3	0	0	0	0.17933	1	6826	6826		82.75	0.50997	1	251090			56226	12384	46408	46449	61507	61507					0.027813523698114295
TELAQSSVDLL	11	Unmodified	_TELAQSSVDLL_					0	0	0		ENST00000471572.6_1_17:29664842-29665128:+|nuORF	ENST00000471572.6_1_17:29664842-29665128:+|nuORF	ENST00000471572.6_1_17:29664842-29665128:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	588.311343	1174.60813	0.099221	5.8373E-05	-4.6946	-0.0027619	-4.5953	-0.0027035	588.3084537302038	81.494	1.3847	79.846	79.315	80.7	-1.6485	0.11913	-0.0013336	NaN	82.75	69	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115510			56227	12384	46408	46449							0.027813523698114295
TELAQSSVDLL	11	Unmodified	_TELAQSSVDLL_					0	0	0		ENST00000471572.6_1_17:29664842-29665128:+|nuORF	ENST00000471572.6_1_17:29664842-29665128:+|nuORF	ENST00000471572.6_1_17:29664842-29665128:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	588.311343	1174.60813	-2.1684	-0.0012757	-2.9575	-0.0017399	-5.1259	-0.0030156	588.3094121705586	81.805	0.80534	79.482	79.106	79.912	-2.3226	-0.24424	0.00071036	NaN	82.75	48	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	387900			56228	12384	46408	46449							0.027813523698114295
TELARALAPG	10	Unmodified	_TELARALAPG_					0	0	0			REV__nc|ENSG00000120256|Q86VZ4-2|LRP11	REV__nc|ENSG00000120256|Q86VZ4-2|LRP11	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.3041687011719	2	499.785099	997.555644	-0.61277	-0.00030625	-0.050999	-2.5488E-05	-0.66376	-0.00033174	499.78494552535994	94.993	1.1831	93.893	93.509	94.692	-1.0995					49	23	3	0	0	0	0.02661	1	8587	8587		32.812	3.6629	1	111700	+		56229	28817	46409	46450	61508	61508					0.056768588175032164
TELAVYHFL	9	Unmodified	_TELAVYHFL_					0	0	0			REV__nc|ENSG00000164066|Q9ULD6-4|INTU	REV__nc|ENSG00000164066|Q9ULD6-4|INTU	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.7706909179688	2	546.78985	1091.56515	0.42794	0.00023399	-2.5657	-0.0014029	-2.1378	-0.0011689	546.7885031285972	72.221	0.49408	72.221	71.956	72.45	0					19	11	3	0	0	0	0.027462	1	7016	7016		37.159	8.0096	1	401450	+		56230	20932	46410	46451	61509	61509					0.023026271030403223
TELDLLSVTI	10	Unmodified	_TELDLLSVTI_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.2687377929688	2	552.313354	1102.61216	0.081686	4.5116E-05	0.67651	0.00037364	0.75819	0.00041876	552.3134598844122	75.316	0.33839	72.085	71.867	72.205	-3.2308					10	6	2	0	0	0	0.026956	1	5901	5901		26.693	10.22	1	23487			56231	4713	46411	46452	61510	61510					0.06495441863535234
TELDRNEYL	9	Unmodified	_TELDRNEYL_					0	0	0			REV__ENSG00000253304|ENST00000521452|TMEM200B	REV__ENSG00000253304|ENST00000521452|TMEM200B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.819091796875	2	576.78021	1151.54587	-0.65237	-0.00037627	0.6268	0.00036152	-0.025573	-1.475E-05	576.7802095004411	90.844	0.72018	88.269	88.007	88.727	-2.575					20	13	2	0	0	0	0.027462	1	7873	7873		34.173	18.531	1	26141	+		56232	23502	46412	46453	61511	61511					-0.023843739785206708
TELDRNEYL	9	Unmodified	_TELDRNEYL_					0	0	0			REV__ENSG00000253304|ENST00000521452|TMEM200B	REV__ENSG00000253304|ENST00000521452|TMEM200B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	576.78021	1151.54587	1.1097	0.00064004	-1.1282	-0.0006507	-0.018482	-1.066E-05	576.7781038103345	89.707	0.74158	88.405	87.84	88.581	-1.302	0.067947	-0.0012001	NaN	42.396	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9886.7	+		56233	23502	46412	46453							-0.023843739785206708
TELEKIHI	8	Unmodified	_TELEKIHI_					0	0	0		tr|A0A553SKA6|A0A553SKA6_NIACILonproteaseOS=NialliacirculansOX=1397GN=lonPE=2SV=1	tr|A0A553SKA6|A0A553SKA6_NIACILonproteaseOS=NialliacirculansOX=1397GN=lonPE=2SV=1	tr|A0A553SKA6|A0A553SKA6_NIACILonproteaseOS=NialliacirculansOX=1397GN=lonPE=2SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	491.7823486328125	2	491.782025	981.549496	-1.3736	-0.00067551	1.225	0.00060241	-0.14865	-7.3101E-05	491.78231059263607	85.701	2.7769	83.481	82.937	85.714	-2.2204					157	54	6	0	0	0	0.60331	1	5034	5034		63.306	0	1	1138800			56234	33595	46413	46454	61512	61512					0.05798340585999995
TELHLTGPL	9	Unmodified	_TELHLTGPL_					0	0	0			REV__ENST00000293190.9_1_17:72838445-72839279:-|nuORF	REV__ENST00000293190.9_1_17:72838445-72839279:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	490.7742614746094	2	490.7742	979.533846	2.0698	0.0010158	-2.2674	-0.0011128	-0.19759	-9.697E-05	490.77300710457405	90.601	2.1684	89.299	88.879	91.048	-1.302					68	41	3	0	0	0	0.25214	1	8009	8009		68.485	0	1	702090	+		56235	24166	46414	46455	61513	61513					0.04326054068940266
TELHLTGPL	9	Unmodified	_TELHLTGPL_					0	0	0			REV__ENST00000293190.9_1_17:72838445-72839279:-|nuORF	REV__ENST00000293190.9_1_17:72838445-72839279:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	490.7748107910156	2	490.7742	979.533846	-1.1941	-0.00058601	0.83173	0.00040819	-0.36233	-0.00017782	490.77442955585013	91.231	1.3058	89.207	88.829	90.135	-2.0241					71	25	4	0	0	0	0.14739	1	5731	5731		85.359	0	1	1112000	+		56236	24166	46414	46455	61514	61514					0.04326054068940266
TELHLTGPL	9	Unmodified	_TELHLTGPL_					0	0	0			REV__ENST00000293190.9_1_17:72838445-72839279:-|nuORF	REV__ENST00000293190.9_1_17:72838445-72839279:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.775390625	2	490.7742	979.533846	-0.32966	-0.00016179	0.27435	0.00013464	-0.055317	-2.7148E-05	490.77419441775845	91.729	2.1166	89.186	88.811	90.928	-2.5425					87	41	5	0	0	0	0.17908	2	7939	7939;7951		79.939	11.455	1	882540	+		56237	24166	46414	46455	61515;61516	61515					0.04326054068940266
TELIKGQN	8	Unmodified	_TELIKGQN_					0	0	0		tr|A0A7D7AAM1|A0A7D7AAM1_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12055PE=3SV=1	tr|A0A7D7AAM1|A0A7D7AAM1_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12055PE=3SV=1	tr|A0A7D7AAM1|A0A7D7AAM1_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12055PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.7626647949219	2	451.750724	901.486896	0.1927	8.7054E-05	0.17273	7.8032E-05	0.36544	0.00016509	451.75065720227775	51.141	0.51138	51.141	50.993	51.504	0					17	11	2	0	0	0	0.028476	1	3946	3946		53.351	0	1	599170			56238	36205	46415	46456	61517	61517					0.03221194517800541
TELKGLSKI	9	Unmodified	_TELKGLSKI_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;ENST00000550262.1_1_12:110770401-110771957:+|nuORF	nc|ENSG00000174437|P16615-5|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	OvCa9_classI_Rep2	2	494.8038635253906	2	494.8055	987.596446	1.0393	0.00051424	-1.2999	-0.00064319	-0.2606	-0.00012895	494.80474753992246	65.191	2.4272	62.466	61.758	64.185	-2.7245					68	47	2	0	0	0	0.14855	1	5005	5005		85.161	0.2453	1	377760			56239	7463	46416	46457	61518	61518					0.10215200137145075
TELKGLSKI	9	Unmodified	_TELKGLSKI_					0	0	0		nc|ENSG00000174437|P16615-5|ATP2A2;nc|ENSG00000174437|P16615-2|ATP2A2;nc|ENSG00000174437|P16615-3|ATP2A2;nc|ENSG00000174437|P16615-4|ATP2A2;ENSG00000174437|ENST00000539276|ATP2A2;ENST00000550262.1_1_12:110770401-110771957:+|nuORF	nc|ENSG00000174437|P16615-5|ATP2A2	nc|ENSG00000174437|P16615-5|ATP2A2	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.8060302734375	2	494.8055	987.596446	-0.82295	-0.0004072	0.5913	0.00029258	-0.23166	-0.00011462	494.8056547669	65.982	2.2518	62.497	61.84	64.092	-3.4854					69	45	2	0	0	0	0.16264	1	4787	4787		82.75	5.9763	1	521860			56240	7463	46416	46457	61519	61519					0.10215200137145075
TELKKAIYK	9	Unmodified	_TELKKAIYK_					0	0	0			REV__tr|A0A7D6VQL6|A0A7D6VQL6_9CLOTDiaminopropionateammonia-lyaseOS=ClostridiumintestinaleOX=36845GN=dpaLPE=4SV=1	REV__tr|A0A7D6VQL6|A0A7D6VQL6_9CLOTDiaminopropionateammonia-lyaseOS=ClostridiumintestinaleOX=36845GN=dpaLPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.7973022460938	2	547.334424	1092.6543	-0.20947	-0.00011465	-2.8966	-0.0015854	-3.1061	-0.0017001	547.8324932951884	90.476	0.61475	87.901	87.75	88.365	-2.575					13	11	2	0	0	0	0.027462	1	7814	7814		40.778	21.675	1	16842	+		56241	31336	46417	46458	61520	61520					0.11167462062553568
TELLAHSIL	9	Unmodified	_TELLAHSIL_					0	0	0			REV__tr|A0A553SPM4|A0A553SPM4_NIACIMannosyl-glycoproteinendo-beta-N-acetylglucosamidaseOS=NialliacirculansOX=1397GN=CEQ21_26660PE=4SV=1	REV__tr|A0A553SPM4|A0A553SPM4_NIACIMannosyl-glycoproteinendo-beta-N-acetylglucosamidaseOS=NialliacirculansOX=1397GN=CEQ21_26660PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.78973388671875	2	498.78985	995.565146	-0.69611	-0.00034721	0.14781	7.3725E-05	-0.5483	-0.00027349	498.7898766980179	115.24	3.0674	115.12	114.7	117.77	-0.11777					207	61	7	0	0	0	0.071436	1	10971	10971		106.42	1.6687	1	2910400	+		56242	30551	46418	46459	61521	61521					0.06718627103043673
TELLAHSIL	9	Unmodified	_TELLAHSIL_					0	0	0			REV__tr|A0A553SPM4|A0A553SPM4_NIACIMannosyl-glycoproteinendo-beta-N-acetylglucosamidaseOS=NialliacirculansOX=1397GN=CEQ21_26660PE=4SV=1	REV__tr|A0A553SPM4|A0A553SPM4_NIACIMannosyl-glycoproteinendo-beta-N-acetylglucosamidaseOS=NialliacirculansOX=1397GN=CEQ21_26660PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.7894592285156	2	498.78985	995.565146	-0.82368	-0.00041084	0.20105	0.00010028	-0.62263	-0.00031056	498.78992392916325	116.11	3.0188	115.07	114.6	117.62	-1.0414					179	60	5	0	0	0	0.19716	1	8650	8650		76.847	0	1	2745900	+		56243	30551	46418	46459	61522	61522					0.06718627103043673
TELLIRKL	8	Unmodified	_TELLIRKL_					0	0	0		ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000197409|ENST00000356476|H3C4;ENSG00000274750|ENST00000614911|H3C6;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000168148|ENST00000366696|H3-4;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000203811|ENST00000369158|H3C14;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000188375|ENST00000340398|H3-5;ENST00000497682.1_1_3:109128527-109128830:-|nuORF	ENST00000586518.1_1_17:73774674-73775034:-|nuORF	ENST00000586518.1_1_17:73774674-73775034:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	493.3226013183594	2	493.32386	984.633166	0.54027	0.00026653	-1.8183	-0.000897	-1.278	-0.00063047	493.3229865794195	78.475	7.726	76.735	75.777	83.503	-1.7398					408	152	5	0	0	0	0.036963	24	6543	6537;6543;6549;6555;6561;6567;6573;6579;6585;6591;6597;6603;6609;6615;6621;6627;6633;6639;6651;6658;6664;6670;6684;6721		177.71	0	1	9096900			56244	14046	46419	46460	61523;61524;61525;61526;61527;61528;61529;61530;61531;61532;61533;61534;61535;61536;61537;61538;61539;61540;61541;61542;61543;61544;61545;61546	61524					0.14023496753691234
TELLIRKL	8	Unmodified	_TELLIRKL_					0	0	0		ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000197409|ENST00000356476|H3C4;ENSG00000274750|ENST00000614911|H3C6;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000168148|ENST00000366696|H3-4;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000203811|ENST00000369158|H3C14;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000188375|ENST00000340398|H3-5;ENST00000497682.1_1_3:109128527-109128830:-|nuORF	ENST00000586518.1_1_17:73774674-73775034:-|nuORF	ENST00000586518.1_1_17:73774674-73775034:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	493.3235168457031	2	493.32386	984.633166	-0.24597	-0.00012134	-0.90931	-0.00044858	-1.1553	-0.00056992	493.3234503328217	78.921	7.0035	76.581	76.162	83.165	-2.3399					348	141	5	0	0	0	0.033834	29	4223	4200;4205;4211;4217;4223;4229;4235;4241;4247;4253;4259;4265;4271;4277;4283;4289;4295;4301;4307;4313;4319;4325;4332;4340;4347;4353;4358;4364;4370		181.81	0	1	11737000			56245	14046	46419	46460	61547;61548;61549;61550;61551;61552;61553;61554;61555;61556;61557;61558;61559;61560;61561;61562;61563;61564;61565;61566;61567;61568;61569;61570;61571;61572;61573;61574;61575	61551					0.14023496753691234
TELLIRKL	8	Unmodified	_TELLIRKL_					0	0	0		ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000197409|ENST00000356476|H3C4;ENSG00000274750|ENST00000614911|H3C6;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000168148|ENST00000366696|H3-4;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000203811|ENST00000369158|H3C14;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000188375|ENST00000340398|H3-5;ENST00000497682.1_1_3:109128527-109128830:-|nuORF	ENST00000586518.1_1_17:73774674-73775034:-|nuORF	ENST00000586518.1_1_17:73774674-73775034:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.3244934082031	2	493.32386	984.633166	-0.22717	-0.00011207	-1.1978	-0.0005909	-1.425	-0.00070297	493.3232853680076	79.478	3.9593	76.727	75.853	79.812	-2.7514					254	81	5	0	0	0	0.046354	16	6445	6421;6433;6445;6457;6469;6481;6493;6505;6518;6530;6541;6553;6565;6579;6592;6609		166.78	0	1	11719000			56246	14046	46419	46460	61576;61577;61578;61579;61580;61581;61582;61583;61584;61585;61586;61587;61588;61589;61590;61591	61578					0.14023496753691234
TELLLEPGN	9	Unmodified	_TELLLEPGN_					0	0	0		ENSG00000134262|ENST00000369569|AP4B1;ENST00000479285.5_1_1:114437689-114438127:-|nuORF	ENSG00000134262|ENST00000369569|AP4B1	ENSG00000134262|ENST00000369569|AP4B1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.32464599609375	2	493.263665	984.512776	-0.53592	-0.00026435	4.3705	0.0021558	3.8346	0.0018914	493.26586395391166	80.743	0.48744	78.032	77.81	78.298	-2.7106					13	9	2	0	0	0	0.027137	1	6622	6622		77.318	8.5308	1	14338			56247	4275	46420	46461	61592	61592					0.01990043969431099
TELLRFQV	8	Unmodified	_TELLRFQV_					0	0	0			REV__ENSG00000143126|ENST00000271332|CELSR2	REV__ENSG00000143126|ENST00000271332|CELSR2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.808349609375	2	503.290017	1004.56548	-0.32603	-0.00016409	-0.31865	-0.00016037	-0.64468	-0.00032446	503.2898086768365	115.99	0.89878	114.62	114.4	115.3	-1.3645					30	17	3	0	0	0	0.028476	1	10828	10828		34.173	0	1	50901	+		56248	19817	46421	46462	61593	61593					0.06338046822895649
TELLRKII	8	Unmodified	_TELLRKII_					0	0	0			REV__nc|ENSG00000179603|O00222-2|GRM8	REV__nc|ENSG00000179603|O00222-2|GRM8	MULTI-MSMS	OvCa9_classI_Rep2	2	493.3253173828125	2	493.32386	984.633166	0.32462	0.00016014	-0.47453	-0.0002341	-0.14991	-7.3954E-05	493.3234613432452	114.6	1.4806	114.48	114.16	115.64	-0.11777					70	29	3	0	0	0	0.6962	1	10901	10901		44.117	0	1	205500	+		56249	22131	46422	46463	61594	61594					0.14023496753691234
TELLRKII	8	Unmodified	_TELLRKII_					0	0	0			REV__nc|ENSG00000179603|O00222-2|GRM8	REV__nc|ENSG00000179603|O00222-2|GRM8	MULTI-MSMS	OvCa9_classI_Rep3	3	493.3235168457031	2	493.32386	984.633166	-0.72862	-0.00035945	0.48404	0.00023879	-0.24458	-0.00012066	493.32396108529844	115.77	1.6299	114.73	114.45	116.08	-1.0414					67	32	3	0	0	0	0.6962	1	8654	8654		44.117	0	1	204450	+		56250	22131	46422	46463	61595	61595					0.14023496753691234
TELLRKII	8	Unmodified	_TELLRKII_					0	0	0			REV__nc|ENSG00000179603|O00222-2|GRM8	REV__nc|ENSG00000179603|O00222-2|GRM8	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.3236083984375	2	493.32386	984.633166	0.2425	0.00011963	-1.1229	-0.00055394	-0.88037	-0.00043431	493.3231302299978	116.17	1.6901	114.8	114.5	116.19	-1.3645					62	32	3	0	0	0	0.72896	1	10884	10884		37.159	0	1	214860	+		56251	22131	46422	46463	61596	61596					0.14023496753691234
TELLTRDTI	9	Unmodified	_TELLTRDTI_					0	0	0		tr|A0A553SLX9|A0A553SLX9_NIACIPTSfructosetransportersubunitIIAOS=NialliacirculansOX=1397GN=CEQ21_21510PE=4SV=1	tr|A0A553SLX9|A0A553SLX9_NIACIPTSfructosetransportersubunitIIAOS=NialliacirculansOX=1397GN=CEQ21_21510PE=4SV=1	tr|A0A553SLX9|A0A553SLX9_NIACIPTSfructosetransportersubunitIIAOS=NialliacirculansOX=1397GN=CEQ21_21510PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	531.276123046875	2	531.295496	1060.57644	-0.88735	-0.00047145	-1.7596	-0.00093486	-2.6469	-0.0014063	531.2951494184601	85.577	2.1428	83.357	82.648	84.79	-2.2204					75	42	5	0	0	0	0.027304	1	5070	5070		98.629	19.178	1	615880			56252	33774	46423	46464	61597	61597					0.0485740440653899
TELNLGNY	8	Unmodified	_TELNLGNY_					0	0	0			REV__tr|A0A553SUL4|A0A553SUL4_NIACIMetalABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_01125PE=3SV=1	REV__tr|A0A553SUL4|A0A553SUL4_NIACIMetalABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_01125PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.2273864746094	2	462.227082	922.439611	0.30189	0.00013954	-1.9794	-0.00091493	-1.6775	-0.00077539	462.2261682280489	140.61	1.0811	139.11	138.81	139.89	-1.4952					45	20	3	0	0	0	0.74971	1	13736	13736		26.796	1.222	1	115030	+		56253	31092	46424	46465	61598	61598					-0.02471084753199193
TELNRLQK	8	Unmodified	_TELNRLQK_					0	0	0		ENSG00000137992|ENST00000370132|DBT	ENSG00000137992|ENST00000370132|DBT	ENSG00000137992|ENST00000370132|DBT	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2898864746094	2	501.290548	1000.56654	-1.4695	-0.00073667	1.3149	0.00065914	-0.15466	-7.7529E-05	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.7549	1	11203	11203		24.203	1.1603	1	97838			56254	4643	46425	46466	61599	61599					0.06628261191804086
TELNRVKQLMI	11	Unmodified	_TELNRVKQLMI_					0	0	0			REV__ENST00000378182.3_1_13:50591365-50591479:+|nuORF	REV__ENST00000378182.3_1_13:50591365-50591479:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	448.9277038574219	3	448.927112	1343.75951	0.75844	0.00034048	-2.526	-0.001134	-1.7675	-0.00079349	448.9257423891122	67.314	0.94068	67.314	67.096	68.037	0					55	23	4	0	0	0	0.50203	1	6284	6284		53.597	7.1401	1	3646000	+		56255	25136	46426	46467	61600	61600					0.10137635196679184
TELNRVKQLMI	11	Unmodified	_TELNRVKQLMI_					0	0	0			REV__ENST00000378182.3_1_13:50591365-50591479:+|nuORF	REV__ENST00000378182.3_1_13:50591365-50591479:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	448.927112	1343.75951	0.75844	0.00034048	-2.526	-0.001134	-1.7675	-0.00079349	448.9257423891122	67.314	0.94068	67.314	67.096	68.037	0	-0.026335	0.001543	NaN	53.597	55	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3646000	+		56256	25136	46426	46467							0.10137635196679184
TELNRVKQLMI	11	Unmodified	_TELNRVKQLMI_					0	0	0			REV__ENST00000378182.3_1_13:50591365-50591479:+|nuORF	REV__ENST00000378182.3_1_13:50591365-50591479:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	448.927112	1343.75951	2.3992	0.0010771	-5.184	-0.0023272	-2.7848	-0.0012502	448.9247856163386	69.87	1.0005	67.299	66.965	67.965	-2.5707	-0.041137	-0.0020367	NaN	53.597	50	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62399	+		56257	25136	46426	46467							0.10137635196679184
TELNRVKQLMI	11	Unmodified	_TELNRVKQLMI_					0	0	0			REV__ENST00000378182.3_1_13:50591365-50591479:+|nuORF	REV__ENST00000378182.3_1_13:50591365-50591479:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		3	448.927112	1343.75951	0.68228	0.00030629	-3.3639	-0.0015101	-2.6816	-0.0012038	448.92554875012877	70.127	1.4096	67.407	67.205	68.615	-2.7196	0.067472	0.00041458	NaN	53.597	46	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121290	+		56258	25136	46426	46467							0.10137635196679184
TELQKFKI	8	Unmodified	_TELQKFKI_					0	0	0		nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.80120849609375	2	503.800217	1005.58588	0.36429	0.00018353	-0.64583	-0.00032537	-0.28154	-0.00014184	503.7996888650338	97.331	1.5153	94.953	94.659	96.175	-2.3786					73	29	3	0	0	0	0.57734	1	8615	8615		68.787	10.557	1	217550			56259	8344	46427	46468	61601	61601					0.08331217482702868
TELQKFKI	8	Unmodified	_TELQKFKI_					0	0	0		nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	MULTI-MATCH	OvCa9_classI_Rep2	2		2	503.800217	1005.58588	-0.43548	-0.00021939	-0.022814	-1.1494E-05	-0.45829	-0.00023089	503.8000872497396	95.791	1.7303	94.763	94.516	96.246	-1.0281	-0.10551	-0.00010335	NaN	68.787	80	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189450			56260	8344	46427	46468							0.08331217482702868
TELQKFKI	8	Unmodified	_TELQKFKI_					0	0	0		nc|ENSG00000186522|Q9P0V9-3|SEPTIN10;ENSG00000186522|ENST00000397712|SEPTIN10;nc|ENSG00000186522|Q9P0V9-2|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	nc|ENSG00000186522|Q9P0V9-3|SEPTIN10	MULTI-MATCH	OvCa9_classI_Rep3	3		2	503.800217	1005.58588	-1.1616	-0.00058522	0.82039	0.00041331	-0.34122	-0.00017191	503.80047534608786	96.719	1.7252	94.89	94.571	96.296	-1.8286	0.021659	0.00074627	NaN	68.787	77	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261890			56261	8344	46427	46468							0.08331217482702868
TELQSVQPP	9	Unmodified	_TELQSVQPP_					0	0	0		ENSG00000066336|ENST00000378538|SPI1;nc|ENSG00000066336|P17947-2|SPI1	ENSG00000066336|ENST00000378538|SPI1	ENSG00000066336|ENST00000378538|SPI1	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.8322448730469	2	499.761289	997.508025	-0.1395	-6.9717E-05	-4.0727	-0.0020354	-4.2122	-0.0021051	499.75876773058803	72.389	0.94066	69.882	69.537	70.478	-2.5071					23	17	3	0	0	0	0.027433	1	5884	5884		45.972	0	1	17586			56262	1350	46428	46469	61602	61602					0.009171598266675574
TELRAQGLHHL	11	Unmodified	_TELRAQGLHHL_					0	0	0			REV__ENST00000391835.1_1_19:50380575-50380692:-|nuORF	REV__ENST00000391835.1_1_19:50380575-50380692:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	424.91497802734375	3	425.570316	1273.68912	0.036292	1.5445E-05	-2.416	-0.0010282	-2.3797	-0.0010127	425.56922867806935	63.797	0.96779	60.322	60.061	61.028	-3.475					35	19	2	0	0	0	0.025668	1	4581	4581		42.338	14.694	1	92842	+		56263	25243	46429	46470	61603	61603					0.06322097923225556
TELTTKSSL	9	Unmodified	_TELTTKSSL_					0	0	0		ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1;nc|ENSG00000133606|Q9UHC7-4|MKRN1;nc|ENSG00000238222|Q13434|MKRN4P	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	490.2692565917969	2	490.268947	978.523341	-0.55627	-0.00027272	-3.1951	-0.0015665	-3.7514	-0.0018392	490.26633483067343	55.824	0.9821	55.824	55.599	56.581	0					55	23	5	0	0	0	0.024645	1	4606	4606		141.52	50.744	1	4003000			56264	4226	46430	46471	61604	61604					0.033220266238686236
TELTTKSSL	9	Unmodified	_TELTTKSSL_					0	0	0		ENST00000475010.5_1_7:140155450-140179030:-|nuORF;nc|ENSG00000133606|Q9UHC7-3|MKRN1;nc|ENSG00000133606|Q9UHC7-2|MKRN1;ENSG00000133606|ENST00000255977|MKRN1;nc|ENSG00000133606|Q9UHC7-4|MKRN1;nc|ENSG00000238222|Q13434|MKRN4P	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	ENST00000475010.5_1_7:140155450-140179030:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.2696533203125	2	490.268947	978.523341	0.4988	0.00024455	-0.87635	-0.00042965	-0.37755	-0.0001851	490.2684120341967	59.666	1.2776	56.274	55.904	57.182	-3.392					66	25	4	0	0	0	0.027568	2	4004	3993;4004		138.06	40.59	1	664360			56265	4226	46430	46471	61605;61606	61606					0.033220266238686236
TELVDHVLQ	9	Unmodified	_TELVDHVLQ_					0	0	0		nc|ENSG00000128829|Q9P2K8-2|EIF2AK4;ENSG00000128829|ENST00000263791|EIF2AK4;BUB1B-EIF2AK4|1|fusion	nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	nc|ENSG00000128829|Q9P2K8-2|EIF2AK4	MULTI-MSMS	OvCa9_classI_Rep2	2	527.2825317382812	2	527.282389	1052.55022	-1.0628	-0.00056039	0.78414	0.00041347	-0.27864	-0.00014692	527.2826541808121	56.719	1.6865	53.915	53.374	55.06	-2.804					115	33	5	0	0	0	0.38529	1	4023	4023		53.351	2.016	1	682000			56266	3906	46431	46472	61607	61607					0.026051352350577872
TELVGKKQ	8	Unmodified	_TELVGKKQ_					0	0	0			REV__nc|ENSG00000147853|Q9UIJ7-2|AK3	REV__nc|ENSG00000147853|Q9UIJ7-2|AK3	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.78515625	2	451.768917	901.523281	0.16008	7.232E-05	1.5066	0.00068064	1.6667	0.00075296	451.7695730723948	43.19	0.59566	43.19	42.883	43.478	0					19	13	2	0	0	0	0.028476	1	2804	2804		16.473	0	1	154230	+		56267	20084	46432	46473	61608	61608					0.06858071414524147
TELVLRQP	8	Unmodified	_TELVLRQP_					0	0	0			REV__nc|ENSG00000049618|Q8NFD5-1|ARID1B;REV__nc|ENSG00000117713|O14497-3|ARID1A	REV__nc|ENSG00000049618|Q8NFD5-1|ARID1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.2732238769531	2	478.282192	954.549831	0.023353	1.117E-05	0.98741	0.00047226	1.0108	0.00048343	478.28254129872613	69.302	0.28748	69.302	69.145	69.433	0					11	6	2	0	0	0	0.028476	1	6599	6599		16.473	0	1	317920	+		56268	16677;18366	46433	46474	61609	61609					0.0707376030584328
TELYELTL	8	Unmodified	_TELYELTL_					0	0	0			REV__tr|A0A553SGC8|A0A553SGC8_NIACIPseudouridine-5'-phosphateglycosidaseOS=NialliacirculansOX=1397GN=psuGPE=3SV=1	REV__tr|A0A553SGC8|A0A553SGC8_NIACIPseudouridine-5'-phosphateglycosidaseOS=NialliacirculansOX=1397GN=psuGPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.7756042480469	2	491.260591	980.506628	-0.40023	-0.00019662	1.8514	0.00090954	1.4512	0.00071292	491.2603653024661	91.958	1.316	89.415	89.111	90.427	-2.5425					32	25	2	0	0	0	0.028476	1	7963	7963		76.847	0	1	24585	+		56269	29686	46434	46475	61610	61610					0.015595257379118266
TEMDEIRKN	9	Unmodified	_TEMDEIRKN_					0	0	0		ENST00000459850.5_1_9:139905575-139923366:-|nuORF;nc|ENSG00000107331|Q9BZC7-2|ABCA2;nc|ENSG00000107331|Q9BZC7|ABCA2;ENSG00000107331|ENST00000341511|ABCA2;nc|ENSG00000107331|Q9BZC7-4|ABCA2;ENST00000487109.5_1_9:139906084-139911410:-|nuORF	ENST00000459850.5_1_9:139905575-139923366:-|nuORF	ENST00000459850.5_1_9:139905575-139923366:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	567.3194580078125	2	568.274238	1134.53392	0.0089164	5.067E-06	-2.1069	-0.0011973	-2.098	-0.0011922	568.2728883070195	92.542	1.8141	91.374	90.814	92.628	-1.168					49	32	2	0	0	0	0.027462	1	8263	8263		44.117	8.4985	1	36892			56270	2600	46435	46476	61611	61611					-0.02796313993349031
TEMGHGTHL	9	Unmodified	_TEMGHGTHL_					0	0	0		nc|ENSG00000161533|Q15067-3|ACOX1;nc|ENSG00000161533|Q15067|ACOX1;ENSG00000161533|ENST00000293217|ACOX1;ACOX1|p.L494Ffs*32|1|0.02|ENSG00000161533|chr17:75949597-75949598|-/TGGGCTCCCA|frameshift_variant;ENST00000591857.5_1_17:73953534-73975166:-|nuORF	nc|ENSG00000161533|Q15067-3|ACOX1	nc|ENSG00000161533|Q15067-3|ACOX1	MULTI-MSMS	OvCa99_classI_Rep5	1	491.72412109375	2	491.724184	981.433814	-1.0171	-0.00050012	0.74355	0.00036562	-0.27353	-0.0001345	491.72442993995855	37.261	0.73766	37.261	37.023	37.761	0					25	15	2	0	0	0	0.29717	1	2023	2023		63.306	0	1	554640			56271	6130	46436	46477	61612	61612					-0.05764506536490899
TEMICKFLVQ	10	Unmodified	_TEMICKFLVQ_					0	0	0		ENST00000460505.5_1_3:49053023-49053570:-|nuORF;nc|ENSG00000178149|Q5D0E6-4|DALRD3;ENSG00000178149|ENST00000341949|DALRD3	ENST00000460505.5_1_3:49053023-49053570:-|nuORF	ENST00000460505.5_1_3:49053023-49053570:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3167114257812	2	606.311777	1210.609	1.2471	0.00075611	2.0198	0.0012246	3.2669	0.0019808	606.3128896182294	99.658	4.6178	97.973	97.474	102.09	-1.685					152	89	5	0	0	0	0.52321	1	6752	6752		51.335	6.9583	1	508550			56272	7733	46437	46478	61613	61613					0.012121522135203122
TEMLPSILNQL	11	Unmodified	_TEMLPSILNQL_					0	0	0		ENSG00000145741|ENST00000380591|BTF3;nc|ENSG00000145741|P20290-2|BTF3	ENSG00000145741|ENST00000380591|BTF3	ENSG00000145741|ENST00000380591|BTF3	MULTI-MSMS	OvCa99_classI_Rep5	1	629.8417358398438	2	629.839213	1257.66387	1.1007	0.00069327	1.8371	0.0011571	2.9378	0.0018503	629.8399947324093	158.07	1.037	158.07	157.8	158.84	0					50	21	4	0	0	0	0.26821	1	18517	18517		70.816	14.184	1	756620			56273	5243	46438	46479	61614	61614					0.04534862285777308
TEMLPSILNQL	11	Oxidation (M)	_TEM(Oxidation (M))LPSILNQL_		TEM(1)LPSILNQL		TEM(82)LPSILNQL	0	0	1		ENSG00000145741|ENST00000380591|BTF3;nc|ENSG00000145741|P20290-2|BTF3	ENSG00000145741|ENST00000380591|BTF3	ENSG00000145741|ENST00000380591|BTF3	MULTI-MSMS	OvCa9_classI_Rep2	2	637.8367919921875	2	637.836671	1273.65879	-2.3554	-0.0015023	1.8994	0.0012115	-0.45602	-0.00029087	637.8377635308332	142.2	1.4326	141.98	141.27	142.7	-0.22697					77	28	3	0	0	0	0.18846	2	14220	14214;14220		81.525	25.091	1	87896			56274	5243	46438	46480	61615;61616	61616		169			0.032905584231457397
TEMLPSILNQL	11	Oxidation (M)	_TEM(Oxidation (M))LPSILNQL_		TEM(1)LPSILNQL		TEM(120)LPSILNQL	0	0	1		ENSG00000145741|ENST00000380591|BTF3;nc|ENSG00000145741|P20290-2|BTF3	ENSG00000145741|ENST00000380591|BTF3	ENSG00000145741|ENST00000380591|BTF3	MULTI-MSMS	OvCa9_classI_Rep3	3	637.836669921875	2	637.836671	1273.65879	-2.5474	-0.0016248	2.391	0.0015251	-0.15638	-9.9743E-05	637.8379978583507	142.6	1.7807	141.59	141.08	142.86	-1.0106					85	35	3	0	0	0	0.049118	3	11809	11809;11817;11822		123.21	61.517	1	112180			56275	5243	46438	46480	61617;61618;61619	61617		169			0.032905584231457397
TEMLPSILNQL	11	Oxidation (M)	_TEM(Oxidation (M))LPSILNQL_		TEM(1)LPSILNQL		TEM(110)LPSILNQL	0	0	1		ENSG00000145741|ENST00000380591|BTF3;nc|ENSG00000145741|P20290-2|BTF3	ENSG00000145741|ENST00000380591|BTF3	ENSG00000145741|ENST00000380591|BTF3	MULTI-MSMS	OvCa9_classI_Rep4_	4	637.8367309570312	2	637.836671	1273.65879	0.19816	0.00012639	0.16027	0.00010223	0.35843	0.00022862	637.8366446952049	143.24	1.6233	141.79	141.1	142.72	-1.4427					79	31	3	0	0	0	0.064064	6	14016	13970;13980;13992;14005;14016;14028		107.01	33.401	1	134760			56276	5243	46438	46480	61620;61621;61622;61623;61624;61625	61624		169			0.032905584231457397
TENDRLADIL	10	Unmodified	_TENDRLADIL_					0	0	0			REV__ENSG00000138594|ENST00000308580|TMOD3	REV__ENSG00000138594|ENST00000308580|TMOD3	MULTI-MSMS	OvCa99_classI_Rep5	1	580.3018798828125	2	580.30131	1158.58807	0.24108	0.0001399	2.4302	0.0014103	2.6713	0.0015502	580.302813675825	81.135	0.74229	81.135	80.871	81.613	0					47	17	5	0	0	0	0.42082	1	8364	8364		65.465	12.529	1	7160300	+		56277	19546	46439	46481	61626	61626					0.015116014298428126
TENEENVLI	9	Unmodified	_TENEENVLI_					0	0	0		TRRAP|p.L2853Nfs*14|1|0.37|ENSG00000196367|chr7:98978847-98978848|-/AA|frameshift_variant;TRRAP|p.Q3700Cfs*14|1|0.37|ENSG00000196367|chr7:99011251-99011252|-/GTGCGTTAAATCTGTCACCAGAA|frameshift_variant;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.V815Afs*78|1|0.09|ENSG00000196367|chr7:98917500-98917501|-/CCTCCTCTATCCTCCTCATCCT|frameshift_variant;TRRAP|p.F1061Yfs*20|1|0.05|ENSG00000196367|chr7:98929994-98929995|-/A|frameshift_variant;TRRAP|p.G1086Afs*42|1|0.04|ENSG00000196367|chr7:98930067-98930068|-/GGCCACTTGTATTTGTTCACTTTTATTTCCGATCC|frameshift_variant	TRRAP|p.L2853Nfs*14|1|0.37|ENSG00000196367|chr7:98978847-98978848|-/AA|frameshift_variant;TRRAP|p.G1086Afs*42|1|0.04|ENSG00000196367|chr7:98930067-98930068|-/GGCCACTTGTATTTGTTCACTTTTATTTCCGATCC|frameshift_variant	TRRAP|p.L2853Nfs*14|1|0.37|ENSG00000196367|chr7:98978847-98978848|-/AA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.8173217773438	2	530.761486	1059.50842	-0.41995	-0.00022289	-2.1461	-0.0011391	-2.566	-0.0013619	530.7596974308508	48.67	1.4754	48.67	48.292	49.768	0					46	33	2	0	0	0	0.027247	1	3622	3622		90.37	23.408	1	474950			56278	8597;36286	46440	46482	61627	61627					-0.018954652441152575
TENFFLGLI	9	Unmodified	_TENFFLGLI_					0	0	0		nc|ENSG00000100341|Q7Z6Z6-2|PNPLA5;ENSG00000100341|ENST00000216177|PNPLA5	nc|ENSG00000100341|Q7Z6Z6-2|PNPLA5	nc|ENSG00000100341|Q7Z6Z6-2|PNPLA5	MULTI-MSMS	OvCa9_classI_Rep2	2	527.281982421875	2	527.2844	1052.55425	-1.0628	-0.00056039	-3.0304	-0.0015979	-4.0932	-0.0021583	527.2826541808121	56.719	1.6865	53.915	53.374	55.06	-2.804					115	33	5	0	0	0	0.31747	1	4029	4029		60.972	6.1956	1	682000			56279	2047	46441	46483	61628	61628					0.030072247287762366
TENGRFLF	8	Unmodified	_TENGRFLF_					0	0	0			REV__ENSG00000108622|ENST00000579788|ICAM2	REV__ENSG00000108622|ENST00000579788|ICAM2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.78265380859375	2	492.250892	982.48723	1.5901	0.00078274	-2.345	-0.0011543	-0.75485	-0.00037157	492.24960964659584	86.176	0.49548	83.53	83.394	83.889	-2.6463					15	9	2	0	0	0	0.028476	1	7293	7293		40.573	0	1	40648	+		56280	17898	46442	46484	61629	61629					-0.00471385762330101
TENKVWANI	9	Unmodified	_TENKVWANI_					0	0	0			REV__ENSG00000135919|ENST00000409304|SERPINE2	REV__ENSG00000135919|ENST00000409304|SERPINE2	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.7805786132812	2	537.782556	1073.55056	-1.8745	-0.0010081	-2.0505	-0.0011027	-3.925	-0.0021108	537.7813144943051	50.716	1.5204	47.543	47.256	48.776	-3.1734					82	29	4	0	0	0	0.3249	1	2962	2962		60.118	5.3419	1	1330600	+		56281	19335	46443	46485	61630	61630					0.016725549548937124
TENLPAKSH	9	Unmodified	_TENLPAKSH_					0	0	0			REV__nc|ENSG00000175054|Q13535-2|ATR	REV__nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.2936706542969	2	498.759081	995.503609	0.067938	3.3885E-05	1.4316	0.00071402	1.4995	0.00074791	498.75956607805705	64.855	0.29252	61.37	61.163	61.456	-3.4854					8	5	2	0	0	0	0.027462	1	4642	4642		15.642	0.97771	1	26927	+		56282	21866	46444	46486	61631	61631					0.005676954037653559
TENNDHINL	9	Unmodified	_TENNDHINL_					0	0	0		ENSG00000188612|ENST00000420826|SUMO2;nc|ENSG00000188612|P61956-2|SUMO2	ENSG00000188612|ENST00000420826|SUMO2	ENSG00000188612|ENST00000420826|SUMO2	MULTI-MSMS	OvCa99_classI_Rep5	1	535.2510375976562	2	535.249077	1068.4836	-0.72072	-0.00038576	0.33758	0.00018069	-0.38314	-0.00020508	535.2492853851263	59.397	1.9084	59.397	59.12	61.028	0					134	47	5	0	0	0	0.0072874	3	5128	5098;5128;5159		190.26	87.398	1	68961000			56283	8484	46445	46487	61632;61633;61634	61633					-0.04790100326863467
TENNIVKEEL	10	Unmodified	_TENNIVKEEL_					0	0	0		ENST00000395134.3_1_6:33257633-33258228:+|nuORF;ENSG00000204220|ENST00000374606|PFDN6	ENST00000395134.3_1_6:33257633-33258228:+|nuORF	ENST00000395134.3_1_6:33257633-33258228:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	594.8108520507812	2	594.808968	1187.60338	-0.06058	-3.6033E-05	0.45751	0.00027213	0.39693	0.0002361	594.8094708131598	73.424	0.63342	73.424	73.195	73.829	0					35	15	4	0	0	0	0.23547	1	7202	7202		89.029	25.495	1	1441300			56284	8958	46446	46488	61635	61635					0.01708468227047888
TENNVKSLL	9	Unmodified	_TENNVKSLL_					0	0	0		nc|ENSG00000114098|Q8IUR7-6|ARMC8;nc|ENSG00000114098|Q8IUR7-3|ARMC8;nc|ENSG00000114098|Q8IUR7-7|ARMC8;nc|ENSG00000114098|Q8IUR7-2|ARMC8;ENSG00000114098|ENST00000469044|ARMC8;nc|ENSG00000114098|Q8IUR7-8|ARMC8	nc|ENSG00000114098|Q8IUR7-6|ARMC8	nc|ENSG00000114098|Q8IUR7-6|ARMC8	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.8191223144531	2	509.282389	1016.55022	0.53049	0.00027017	-0.46063	-0.00023459	0.069857	3.5577E-05	509.2820505112254	72.429	0.6763	72.429	72.165	72.842	0					41	16	4	0	0	0	0.027433	1	7046	7046		54.776	19.158	1	1810400			56285	3011	46447	46489	61636	61636					0.04261135235049096
TENPHGARL	9	Unmodified	_TENPHGARL_					0	0	0		ENSG00000243725|ENST00000371281|TTC4	ENSG00000243725|ENST00000371281|TTC4	ENSG00000243725|ENST00000371281|TTC4	MULTI-MSMS	OvCa99_classI_Rep5	1	497.7566223144531	2	497.756872	993.499192	-0.048263	-2.4023E-05	-0.029818	-1.4842E-05	-0.078082	-3.8866E-05	497.7566616500011	32.774	0.93093	32.774	32.602	33.533	0					42	18	6	0	0	0	0.38969	1	1459	1459		52.937	2.9122	1	581800			56286	9383	46448	46490	61637	61637					0.002182309808517857
TENRAIGLL	9	Unmodified	_TENRAIGLL_					0	0	0			REV__nc|ENSG00000149761|Q9BRQ3-3|NUDT22	REV__nc|ENSG00000149761|Q9BRQ3-3|NUDT22	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.7669982910156	2	493.785099	985.555644	0.47519	0.00023464	-0.76592	-0.0003782	-0.29073	-0.00014356	493.78453233412546	68.614	0.68899	65.123	64.818	65.507	-3.4902					25	13	2	0	0	0	0.027461	1	5096	5096		49.442	15.926	1	96561	+		56287	20176	46449	46491	61638	61638					0.06228858817530636
TENSEKISL	9	Unmodified	_TENSEKISL_					0	0	0		nc|ENSG00000134900|P29144|TPP2;ENSG00000134900|ENST00000376052|TPP2	nc|ENSG00000134900|P29144|TPP2	nc|ENSG00000134900|P29144|TPP2	MULTI-MSMS	OvCa99_classI_Rep5	1	510.7658386230469	2	510.764029	1019.5135	0.16565	8.4608E-05	-0.14591	-7.4526E-05	0.019739	1.0082E-05	510.76387360103547	62.275	0.91895	62.275	61.784	62.703	0					48	21	3	0	0	0	0.0070026	1	5539	5539		185.72	63.542	1	2718300			56288	4344	46450	46492	61639	61639					0.004528386185029376
TENSIPTVDL	10	Unmodified	_TENSIPTVDL_					0	0	0		ENSG00000187676|ENST00000343307|B3GLCT	ENSG00000187676|ENST00000343307|B3GLCT	ENSG00000187676|ENST00000343307|B3GLCT	MULTI-MSMS	OvCa9_classI_Rep3	3	544.778564453125	2	544.777136	1087.53972	1.5844	0.00086316	2.6279	0.0014316	4.2124	0.0022948	544.7783465181305	61.638	1.529	58.569	57.997	59.526	-3.0685					84	39	3	0	0	0	0.65849	1	2175	2175		35.152	0	1	38046			56289	8423	46451	46493	61640	61640					-0.0005489221005063882
TENSKKAF	8	Unmodified	_TENSKKAF_					0	0	0		ENSG00000175267|ENST00000389398|VWA3A;VWA3A|p.L778Afs*11|2|0.13|ENSG00000175267|chr16:22140185-22140186|-/C|frameshift_variant;VWA3A|p.E437Gfs*20|1|0.11|ENSG00000175267|chr16:22121568-22121569|-/AG|frameshift_variant	ENSG00000175267|ENST00000389398|VWA3A	ENSG00000175267|ENST00000389398|VWA3A	MULTI-SECPEP	OvCa99_classI_Rep5	1	462.7574157714844	2	462.742899	923.471246	-0.26461	-0.00012245	2.5792	0.0011935	2.3146	0.0010711	462.74424709667795	61.908	0.16841	61.908	61.826	61.994	0					5	3	2	0	0	0	0.028476	1	5477	5477		8.8223	0	1	132760			56290	7531	46452	46494	61641	61641					0.006449080007655539
TENTRFCL	8	Unmodified	_TENTRFCL_					0	0	0		nc|ENSG00000111445|P40937-2|RFC5;ENSG00000111445|ENST00000454402|RFC5	nc|ENSG00000111445|P40937-2|RFC5	nc|ENSG00000111445|P40937-2|RFC5	MULTI-SECPEP	OvCa9_classI_Rep3	3	491.7826232910156	2	492.234384	982.454216	-1.3651	-0.00067194	0.13507	6.6487E-05	-1.23	-0.00060545	492.2340652967729	85.756	0.55103	83.535	83.184	83.735	-2.2204					13	10	2	0	0	0	0.028476	1	5039	5039		60.972	18.576	1	8601.1			56291	2827	46453	46495	61642	61642					-0.037713358767064165
TEPAEYEFLW	10	Unmodified	_TEPAEYEFLW_					0	0	0		ENSG00000254585|ENST00000650528|MAGEL2	ENSG00000254585|ENST00000650528|MAGEL2	ENSG00000254585|ENST00000650528|MAGEL2	MULTI-SECPEP	OvCa9_classI_Rep3	3	642.8466796875	2	642.792786	1283.57102	-0.85575	-0.00055007	3.5867	0.0023055	2.731	0.0017555	642.7954564146785	76.016	0.25472	73.644	73.518	73.773	-2.3715					8	4	2	0	0	0	0.026942	1	3893	3893		35.618	0	1	19456			56292	9448	46454	46496	61643	61643					-0.059423191759378824
TEPALYGVTL	10	Unmodified	_TEPALYGVTL_					0	0	0		tr|A0A7D6VT24|A0A7D6VT24_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_15205PE=4SV=1	tr|A0A7D6VT24|A0A7D6VT24_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_15205PE=4SV=1	tr|A0A7D6VT24|A0A7D6VT24_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_15205PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	532.2886352539062	2	532.28714	1062.55973	1.504	0.00080054	1.8194	0.00096845	3.3234	0.001769	532.2876458042824	98.353	0.79852	98.353	98.079	98.877	0					49	18	4	0	0	0	0.55359	1	10829	10829		47.657	0	1	2647800			56293	35082	46455	46497	61644	61644					0.03094903520582193
TEPDFQIAQ	9	Unmodified	_TEPDFQIAQ_					0	0	0			REV__ENSG00000188641|ENST00000370192|DPYD	REV__ENSG00000188641|ENST00000370192|DPYD	MULTI-MSMS	OvCa99_classI_Rep5	1	524.7554931640625	2	524.750921	1047.48729	-0.73847	-0.00038751	3.1246	0.0016396	2.3861	0.0012521	524.7524007015054	54.387	0.45784	54.387	54.089	54.547	0					17	10	2	0	0	0	0.34132	1	4393	4393		58.23	2.7257	1	663960	+		56294	22724	46456	46498	61645	61645					-0.0345543055300368
TEPDLREK	8	Unmodified	_TEPDLREK_					0	0	0			REV__ENSG00000125676|ENST00000245838|THOC2	REV__ENSG00000125676|ENST00000245838|THOC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.7673645019531	2	494.258914	986.503274	-0.65341	-0.00032296	2.9227	0.0014446	2.2693	0.0011216	494.26035217284453	71.013	1.2086	67.557	67.203	68.412	-3.4563					34	24	2	0	0	0	0.028476	1	5486	5486		34.173	0	1	536270	+		56295	18738	46457	46499	61646	61646					0.009482756839020112
TEPEPLVYT	9	Unmodified	_TEPEPLVYT_					0	0	0			REV__PLXNC1|p.S594Ffs*3|1|0.06|ENSG00000136040|chr12:94224305-94224306|-/TC|frameshift_variant	REV__PLXNC1|p.S594Ffs*3|1|0.06|ENSG00000136040|chr12:94224305-94224306|-/TC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	524.765625	2	524.763497	1047.51244	1.2156	0.00063789	3.122	0.0016383	4.3376	0.0022762	524.7650401246628	128.53	2.025	128.31	127.54	129.56	-0.22697					74	40	3	0	0	0	0.48324	1	12612	12612		44.117	8.9161	1	156760	+		56296	19352	46458	46500	61647	61647					-0.009413757504262321
TEPSTEKTL	9	Unmodified	_TEPSTEKTL_					0	0	0		tr|A0A7D6VSX9|A0A7D6VSX9_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10970PE=3SV=1	tr|A0A7D6VSX9|A0A7D6VSX9_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10970PE=3SV=1	tr|A0A7D6VSX9|A0A7D6VSX9_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10970PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	503.2582702636719	2	503.258579	1004.50261	-0.31227	-0.00015715	0.34198	0.0001721	0.029712	1.4953E-05	503.2587103597876	69.45	1.9539	69.45	68.649	70.603	0					113	47	4	0	0	0	0.13482	1	6648	6648		87.754	2.8388	1	26974000			56297	35066	46459	46501	61648	61648					0.0005343624420675042
TEQHILASTP	10	Unmodified	_TEQHILASTP_					0	0	0		ENST00000312251.7_1_16:5074987-5075392:-|nuORF	ENST00000312251.7_1_16:5074987-5075392:-|nuORF	ENST00000312251.7_1_16:5074987-5075392:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.2797241210938	2	548.785296	1095.55604	-0.029487	-1.6182E-05	-2.3855	-0.0013091	-2.415	-0.0013253	548.7837447822118	115.77	0.69284	114.37	114.12	114.81	-1.3977					23	13	2	0	0	0	0.026891	1	10836	10836		24.519	0	1	21318			56298	10307	46460	46502	61649	61649					0.012082337467290927
TEQKLAVEI	9	Unmodified	_TEQKLAVEI_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-8|SYNE1;ENST00000367256.9_1_6:152443573-152639413:-|nuORF;nc|ENSG00000131018|Q8NF91-2|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.7928466796875	2	515.792589	1029.57063	1.7886	0.00092256	2.7561	0.0014216	4.5447	0.0023441	515.7939908700296	82.086	0.95473	82.086	81.654	82.609	0					46	22	3	0	0	0	0.070405	1	8495	8495		107.01	5.4068	1	1545500			56299	4036	46461	46503	61650	61650					0.05702305894828896
TEQLYAALI	9	Unmodified	_TEQLYAALI_					0	0	0			REV__tr|A0A553SK26|A0A553SK26_NIACILong-chainfattyacid--CoAligaseOS=NialliacirculansOX=1397GN=CEQ21_18005PE=4SV=1	REV__tr|A0A553SK26|A0A553SK26_NIACILong-chainfattyacid--CoAligaseOS=NialliacirculansOX=1397GN=CEQ21_18005PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.3092041015625	2	511.281857	1020.54916	1.5318	0.0007832	-0.69827	-0.00035701	0.83356	0.00042619	511.2815039986508	111.22	0.71165	111.22	110.8	111.51	0					24	15	3	0	0	0	0.027426	1	12595	12595		44.117	0	1	199560	+		56300	30069	46462	46504	61651	61651					0.039709208661292905
TEQMAHAV	8	Unmodified	_TEQMAHAV_					0	0	0		FCHSD2|p.N350Tfs*14|1|0.04|ENSG00000137478|chr11:72887567-72887568|-/AAATTAACATCTTCAACATTGGGCCTTGCTACTACTG|frameshift_variant;nc|ENSG00000137478|O94868-3|FCHSD2;nc|ENSG00000137478|O94868-2|FCHSD2;ENSG00000137478|ENST00000409418|FCHSD2	FCHSD2|p.N350Tfs*14|1|0.04|ENSG00000137478|chr11:72887567-72887568|-/AAATTAACATCTTCAACATTGGGCCTTGCTACTACTG|frameshift_variant	FCHSD2|p.N350Tfs*14|1|0.04|ENSG00000137478|chr11:72887567-72887568|-/AAATTAACATCTTCAACATTGGGCCTTGCTACTACTG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	443.7090148925781	2	443.708002	885.401452	-0.83129	-0.00036885	1.7971	0.0007974	0.96584	0.00042855	443.7087028952305	93.614	1.267	91.653	91.328	92.595	-1.9617					45	24	2	0	0	0	0.72922	1	6013	6013		37.028	1.8278	1	406370			56301	4587	46463	46505	61652	61652					-0.045832939395154426
TEQNWISL	8	Unmodified	_TEQNWISL_					0	0	0			REV__ENST00000349792.9_1_1:151171540-151196754:+|nuORF	REV__ENST00000349792.9_1_1:151171540-151196754:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.79449462890625	2	495.748182	989.481811	-0.069636	-3.4522E-05	-0.70543	-0.00034971	-0.77506	-0.00038424	495.748010748722	52.888	0.77865	52.888	52.653	53.432	0					30	17	3	0	0	0	0.028476	1	4189	4189		71.296	5.4925	1	790100	+		56302	24717	46464	46506	61653	61653					-0.01335109344790908
TEQSKIFIHR	10	Unmodified	_TEQSKIFIHR_					0	0	0		PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant;ENSG00000205038|ENST00000378402|PKHD1L1;PKHD1L1|p.P3662T|1|0.07|ENSG00000205038|chr8:109504482-109504482|C/A|missense_variant	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	629.84814453125	2	629.848761	1257.68297	0.41848	0.00026358	0.066793	4.2069E-05	0.48527	0.00030565	629.8484322050896	91.238	2.6459	90.003	89.341	91.986	-1.2355					108	50	4	0	0	0	0.47131	1	8107	8107		37.812	0	1	840130			56303	9047	46465	46507	61654	61654					0.0644357969167686
TERDKQDYWIM	11	Unmodified	_TERDKQDYWIM_					0	0	0		tr|A0A553SKS3|A0A553SKS3_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_19215PE=3SV=1	tr|A0A553SKS3|A0A553SKS3_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_19215PE=3SV=1	tr|A0A553SKS3|A0A553SKS3_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_19215PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.7934875488281	3	495.566131	1483.67656	-0.42393	-0.00021008	2.3028	0.0011412	1.8789	0.00093112	495.90161934775324	52.476	0.30617	49.268	49.145	49.451	-3.208					10	5	3	0	0	0	0.026174	1	3130	3130		17.167	0.63689	1	21315			56304	33646	46466	46508	61655	61655					-0.04592726321993723
TERDLREVF	9	Unmodified	_TERDLREVF_					0	0	0		nc|ENSG00000164548|Q13595-2|TRA2A;ENST00000494255.5_1_7:23547037-23556014:-|nuORF;TRA2B|p.F166Lfs*4|1|0.52|ENSG00000136527|chr3:185923820-185923820|A/-|frameshift_variant;nc|ENSG00000164548|Q13595-4|TRA2A;nc|ENSG00000164548|Q13595-3|TRA2A;nc|ENSG00000136527|P62995-3|TRA2B;ENSG00000164548|ENST00000297071|TRA2A;ENSG00000136527|ENST00000453386|TRA2B	nc|ENSG00000164548|Q13595-2|TRA2A	nc|ENSG00000164548|Q13595-2|TRA2A	MULTI-MSMS	OvCa9_classI_Rep2	2	582.8036499023438	2	582.80402	1163.59349	-0.70194	-0.00040909	0.34175	0.00019918	-0.36018	-0.00020992	582.8041189340825	74.55	1.0923	72.579	72.167	73.259	-1.9711					69	20	4	0	0	0	0.58322	1	6108	6108		33.922	0.40605	1	410780			56305	4494	46467	46509	61656	61656					0.018233250123330436
TERDLREVF	9	Unmodified	_TERDLREVF_					0	0	0		nc|ENSG00000164548|Q13595-2|TRA2A;ENST00000494255.5_1_7:23547037-23556014:-|nuORF;TRA2B|p.F166Lfs*4|1|0.52|ENSG00000136527|chr3:185923820-185923820|A/-|frameshift_variant;nc|ENSG00000164548|Q13595-4|TRA2A;nc|ENSG00000164548|Q13595-3|TRA2A;nc|ENSG00000136527|P62995-3|TRA2B;ENSG00000164548|ENST00000297071|TRA2A;ENSG00000136527|ENST00000453386|TRA2B	nc|ENSG00000164548|Q13595-2|TRA2A	nc|ENSG00000164548|Q13595-2|TRA2A	MULTI-MSMS	OvCa9_classI_Rep4_	4	582.8045043945312	2	582.80402	1163.59349	-0.60347	-0.00035171	-0.34275	-0.00019976	-0.94622	-0.00055146	582.8037669692097	75.607	0.86997	72.668	72.352	73.222	-2.9389					57	17	4	0	0	0	0.37135	2	5973	5962;5973		54.776	13.998	1	643310			56306	4494	46467	46509	61657;61658	61658					0.018233250123330436
TERDLREVF	9	Unmodified	_TERDLREVF_					0	0	0		nc|ENSG00000164548|Q13595-2|TRA2A;ENST00000494255.5_1_7:23547037-23556014:-|nuORF;TRA2B|p.F166Lfs*4|1|0.52|ENSG00000136527|chr3:185923820-185923820|A/-|frameshift_variant;nc|ENSG00000164548|Q13595-4|TRA2A;nc|ENSG00000164548|Q13595-3|TRA2A;nc|ENSG00000136527|P62995-3|TRA2B;ENSG00000164548|ENST00000297071|TRA2A;ENSG00000136527|ENST00000453386|TRA2B	nc|ENSG00000164548|Q13595-2|TRA2A	nc|ENSG00000164548|Q13595-2|TRA2A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	582.80402	1163.59349	-1.5886	-0.00092581	1.0727	0.00062517	-0.51587	-0.00030065	582.8044347115414	74.614	1.3822	72.203	71.846	73.228	-2.4106	-0.27988	0.00081919	NaN	54.776	54	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110720			56307	4494	46467	46509							0.018233250123330436
TERDYVGTL	9	Unmodified	_TERDYVGTL_					0	0	0		nc|ENSG00000046889|Q70Z35-3|PREX2;ENST00000529398.5_1_8:68864629-69017594:+|nuORF;nc|ENSG00000046889|Q70Z35-4|PREX2;ENSG00000046889|ENST00000288368|PREX2;nc|ENSG00000124126|Q8TCU6-3|PREX1;ENSG00000124126|ENST00000371941|PREX1;PREX1|p.C968Wfs*56|1|0.22|ENSG00000124126|chr20:48650120-48650121|-/ACCAAGGGTCCCACTGGCTGGCCCGAAGCTGC|frameshift_variant;PREX1|p.T970Vfs*46|1|0.08|ENSG00000124126|chr20:48650116-48650117|-/CATGGTGGTGATGCAGTGCTGGGTGTAC|frameshift_variant;PREX2|p.I443Tfs*36|1|0.1|ENSG00000046889|chr8:68060768-68060768|T/-|frameshift_variant	nc|ENSG00000046889|Q70Z35-3|PREX2;nc|ENSG00000124126|Q8TCU6-3|PREX1;PREX1|p.T970Vfs*46|1|0.08|ENSG00000124126|chr20:48650116-48650117|-/CATGGTGGTGATGCAGTGCTGGGTGTAC|frameshift_variant;PREX2|p.I443Tfs*36|1|0.1|ENSG00000046889|chr8:68060768-68060768|T/-|frameshift_variant	nc|ENSG00000124126|Q8TCU6-3|PREX1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2859497070312	2	527.264196	1052.51384	-0.57063	-0.00030087	1.7925	0.00094512	1.2219	0.00064425	527.2655912834485	51.69	0.41391	51.69	51.374	51.788	0					21	9	3	0	0	0	0.027448	1	3976	3976		53.351	15.54	1	1182700			56308	14997;15520;1137;15521	46468	46510	61659	61659					-0.010317416616544506
TEREACSRI	9	Unmodified	_TEREACSRI_					0	0	0			REV__chr4:189958333-189960748|107|11.0|0.06|7.57|+|0|TE_info:L1ME4b,L1ME4b_dup6056,L1,LINE,donor,-,189958002,189958333|None,FRG1|8	REV__chr4:189958333-189960748|107|11.0|0.06|7.57|+|0|TE_info:L1ME4b,L1ME4b_dup6056,L1,LINE,donor,-,189958002,189958333|None,FRG1|8	MULTI-MSMS	OvCa9_classI_Rep2	2	532.7628173828125	2	532.761297	1063.50804	-0.45972	-0.00024492	3.9214	0.0020892	3.4617	0.0018443	532.7632052598339	112.88	3.504	112.76	111.98	115.49	-0.12174					139	70	3	0	0	0	0.56889	1	10692	10692		35.618	2.8059	1	216680	+		56309	16052	46469	46511	61660	61660					-0.0211716344499564
TERETLVE	8	Unmodified	_TERETLVE_					0	0	0		tr|A0A7D6VQR1|A0A7D6VQR1_9CLOTAminopeptidasePfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22160PE=3SV=1	tr|A0A7D6VQR1|A0A7D6VQR1_9CLOTAminopeptidasePfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22160PE=3SV=1	tr|A0A7D6VQR1|A0A7D6VQR1_9CLOTAminopeptidasePfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22160PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.78082275390625	2	488.750921	975.48729	0.36466	0.00017823	0.14547	7.1098E-05	0.51013	0.00024933	488.75132173050326	74.231	0.34135	74.231	73.983	74.324	0					14	8	2	0	0	0	0.028476	1	7328	7328		56.721	5.3856	1	337990			56310	34864	46470	46512	61661	61661					-0.0014343055299832486
TERILGDVQ	9	Unmodified	_TERILGDVQ_					0	0	0			REV__nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	REV__nc|ENSG00000172661|Q9Y4E1-5|WASHC2C	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.3108520507812	2	515.780013	1029.54547	0.27113	0.00013984	1.0622	0.00054787	1.3334	0.00068772	515.7811259351643	99.353	0.35658	97.668	97.524	97.881	-1.685					8	6	2	0	0	0	0.027461	1	6668	6668		13.454	0	1	19120	+		56311	17319	46471	46513	61662	61662					0.03188251092274186
TERKKEEAK	9	Unmodified	_TERKKEEAK_					0	0	0			REV__ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant	REV__ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	560.7906494140625	2	559.811845	1117.60914	1.5957	0.00089329	1.1943	0.00066859	2.79	0.0015619	559.8123106702119	65.796	1.7139	63.101	62.052	63.766	-2.6958					53	33	3	0	0	0	0.027462	1	4949	4949		31.53	15.057	1	48637	+		56312	23017	46472	46514	61663	61663					0.05503611529366026
TERKKEEAK	9	Unmodified	_TERKKEEAK_					0	0	0			REV__ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant	REV__ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	559.811845	1117.60914	0.6112	0.00034216	2.1385	0.0011972	2.7497	0.0015393	559.81311510364	66.619	0.7849	63.129	62.756	63.541	-3.4902	0.014036	0.00053319	NaN	31.53	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74777	+		56313	23017	46472	46514							0.05503611529366026
TERLEQGQA	9	Unmodified	_TERLEQGQA_					0	0	0		ENSG00000255587|ENST00000612677|RAB44	ENSG00000255587|ENST00000612677|RAB44	ENSG00000255587|ENST00000612677|RAB44	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.8152465820312	2	516.259445	1030.50434	-0.92957	-0.0004799	-1.3403	-0.00069194	-2.2699	-0.0011718	516.2592824597301	28.676	0.29975	28.676	28.539	28.838	0					8	5	2	0	0	0	0.027462	1	959	959		27.882	0	1	17205			56314	9459	46473	46515	61664	61664					-0.009695099471855428
TERNLQWRLRK	11	Unmodified	_TERNLQWRLRK_					0	0	0			REV__ENST00000590996.5_2_17:41329998-41338351:+|nuORF	REV__ENST00000590996.5_2_17:41329998-41338351:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.3177185058594	3	500.623303	1498.84808	-0.91264	-0.00045689	-0.070491	-3.5289E-05	-0.98313	-0.00049218	500.6233727385576	40.269	0.92349	37.315	36.814	37.737	-2.9541					28	17	2	0	0	0	0.026383	1	1660	1660		12.957	7.5446	1	13940	+		56315	27924	46474	46516	61665	61665					0.11860811551332517
TERPQPQTL	9	Unmodified	_TERPQPQTL_					0	0	0		ENSG00000104671|ENST00000221114|DCTN6	ENSG00000104671|ENST00000221114|DCTN6	ENSG00000104671|ENST00000221114|DCTN6	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.2869873046875	2	535.285463	1068.55637	-1.8133	-0.00097063	1.5423	0.00082559	-0.27096	-0.00014504	535.2862573125623	53.892	1.2803	50.645	50.415	51.695	-3.2474					65	24	4	0	0	0	0.42576	1	3335	3335		49.536	4.5138	1	638320			56316	2384	46475	46517	61666	61666					0.024836534665837462
TERQLQLFP	9	Unmodified	_TERQLQLFP_					0	0	0			REV__ENST00000466096.5_1_9:139726444-139730415:+|nuORF	REV__ENST00000466096.5_1_9:139726444-139730415:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	566.3141479492188	2	566.31148	1130.60841	-0.23117	-0.00013092	-0.64705	-0.00036643	-0.87823	-0.00049735	566.3110520301987	65.351	0.79465	65.351	65.15	65.945	0					38	19	3	0	0	0	0.27546	1	5990	5990		65.803	0	1	2670400	+		56317	22852	46476	46518	61667	61667					0.04832816880320934
TERRALLL	8	Unmodified	_TERRALLL_					0	0	0		ENSG00000185608|ENST00000333130|MRPL40	ENSG00000185608|ENST00000333130|MRPL40	ENSG00000185608|ENST00000333130|MRPL40	MULTI-MSMS	OvCa9_classI_Rep3	3	486.3042907714844	2	486.303458	970.592364	0.78572	0.0003821	2.8872	0.0014041	3.673	0.0017862	486.30477333878326	121.54	2.2543	120.51	120.01	122.27	-1.0286					108	42	4	0	0	0	0.66704	1	9354	9354		50.025	4.0726	1	892460			56318	8265	46477	46519	61668	61668					0.10589155434081476
TERRGREG	8	Unmodified	_TERRGREG_					0	0	0			REV__nc|ENSG00000108352|Q9UHV5|RAPGEFL1	REV__nc|ENSG00000108352|Q9UHV5|RAPGEFL1	MULTI-MSMS	OvCa9_classI_Rep2	2	480.75030517578125	2	480.752121	959.48969	-1.1714	-0.00056314	-2.9644	-0.0014251	-4.1357	-0.0019883	480.7505752304628	49.16	2.6747	46.399	46.127	48.802	-2.7603					122	53	4	0	0	0	0.68714	1	3076	3076		45.952	1.4209	1	594120	+		56319	17880	46478	46520	61669	61669					0.008324626953367442
TERRRITEKSL	11	Unmodified	_TERRRITEKSL_					0	0	0			REV__SPHKAP|p.L804Sfs*32|1|0.05|ENSG00000153820|chr2:228018444-228018444|G/-|frameshift_variant	REV__SPHKAP|p.L804Sfs*32|1|0.05|ENSG00000153820|chr2:228018444-228018444|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	463.27679443359375	3	463.603797	1387.78956	-0.6589	-0.00030547	2.8409	0.001317	2.182	0.0010116	463.60516271093525	75.549	0.87752	73.695	73.219	74.096	-1.854					26	16	2	0	0	0	0.025955	1	6167	6167		37.508	7.9574	1	29567	+		56320	20348	46479	46521	61670	61670					0.11117710186226759
TERRRITEKSL	11	Unmodified	_TERRRITEKSL_					0	0	0			REV__SPHKAP|p.L804Sfs*32|1|0.05|ENSG00000153820|chr2:228018444-228018444|G/-|frameshift_variant	REV__SPHKAP|p.L804Sfs*32|1|0.05|ENSG00000153820|chr2:228018444-228018444|G/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		3	463.603797	1387.78956	-0.81747	-0.00037898	3.2248	0.001495	2.4074	0.0011161	463.60519858139963	76.222	0.98598	73.851	73.467	74.453	-2.3715	0.077953	0.00010788	NaN	37.508	33	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37905	+		56321	20348	46479	46521							0.11117710186226759
TERRRITEKSL	11	Unmodified	_TERRRITEKSL_					0	0	0			REV__SPHKAP|p.L804Sfs*32|1|0.05|ENSG00000153820|chr2:228018444-228018444|G/-|frameshift_variant	REV__SPHKAP|p.L804Sfs*32|1|0.05|ENSG00000153820|chr2:228018444-228018444|G/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	463.603797	1387.78956	-0.69637	-0.00032284	3.4666	0.0016071	2.7703	0.0012843	463.6053034367281	76.712	0.76132	73.773	73.459	74.22	-2.9389	0.00033629	0.00044417	NaN	37.508	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31643	+		56322	20348	46479	46521							0.11117710186226759
TERRVPFSLLR	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))TERRVPFSLLR_					1	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MSMS	OvCa99_classI_Rep5	1	472.60955810546875	3	472.60877	1414.80448	1.7807	0.00084157	-0.083894	-3.9649E-05	1.6968	0.00080193	472.60875439315134	93.193	1.2038	93.193	92.803	94.007	0					95	28	6	0	0	0	0.054709	3	10102	10073;10102;10133		112.85	49.419	1	27518000			56323	2535	46480	46522	61671;61672;61673	61672					0.11367202054225345
TERRVPFSLLR	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))TERRVPFSLLR_					1	0	0		ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MSMS	OvCa9_classI_Rep2	2	472.60772705078125	3	472.60877	1414.80448	-0.39638	-0.00018733	-0.30312	-0.00014325	-0.6995	-0.00033059	472.60862095747	94.941	1.4319	93.841	93.46	94.892	-1.0995					92	28	4	0	0	0	0.38584	1	8521	8521		62.166	29.416	1	437030			56324	2535	46480	46522	61674	61674					0.11367202054225345
TERTYVQDL	9	Unmodified	_TERTYVQDL_					0	0	0		PLEKHG1|p.R975Sfs*13|1|0.31|ENSG00000120278|chr6:150832032-150832053|GCAGGGTGTTTATGATGGCTCG/-|frameshift_variant;ENSG00000120278|ENST00000696526|PLEKHG1	PLEKHG1|p.R975Sfs*13|1|0.31|ENSG00000120278|chr6:150832032-150832053|GCAGGGTGTTTATGATGGCTCG/-|frameshift_variant	PLEKHG1|p.R975Sfs*13|1|0.31|ENSG00000120278|chr6:150832032-150832053|GCAGGGTGTTTATGATGGCTCG/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	561.7979125976562	2	562.782753	1123.55095	-0.095248	-5.3604E-05	0.35911	0.0002021	0.26386	0.0001485	563.2867207765296	83.644	0.19876	82.045	81.921	82.12	-1.5988					5	3	2	0	0	0	0.027259	1	7182	7182		110.12	0	1	5716.4			56325	3426	46481	46523	61675	61675					-0.005880701158957891
TERVTFSTL	9	Unmodified	_TERVTFSTL_					0	0	0			REV__ENST00000531980.5_1_1:67337151-67359009:-|nuORF	REV__ENST00000531980.5_1_1:67337151-67359009:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	527.2859497070312	2	527.282389	1052.55022	-0.60687	-0.00031999	-0.5352	-0.0002822	-1.1421	-0.00060219	527.2822314364422	51.642	3.3838	51.642	51.248	54.632	0					222	79	6	0	0	0	0.38529	1	3976	3976		53.351	0	1	134030000	+		56326	27224	46482	46524	61676	61676					0.026051352350577872
TERWFVGG	8	Unmodified	_TERWFVGG_					0	0	0		ENSG00000009724|ENST00000400897|MASP2	ENSG00000009724|ENST00000400897|MASP2	ENSG00000009724|ENST00000400897|MASP2	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.2892150878906	2	476.237784	950.461016	-0.26151	-0.00012454	4.239	0.0020188	3.9774	0.0018942	476.239801113467	95.695	1.0904	94.667	93.923	95.013	-1.0281					27	21	2	0	0	0	0.028476	1	8625	8625		26.796	1.3459	1	14471			56327	931	46483	46525	61677	61677					-0.016196549337905708
TERWFVGG	8	Unmodified	_TERWFVGG_					0	0	0		ENSG00000009724|ENST00000400897|MASP2	ENSG00000009724|ENST00000400897|MASP2	ENSG00000009724|ENST00000400897|MASP2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	476.237784	950.461016	1.4633	0.00069689	2.7792	0.0013235	4.2425	0.0020204	476.23897608758693	96.776	0.69417	94.351	94.118	94.812	-2.4256	-0.10679	-0.0011481	NaN	26.796	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51339			56328	931	46483	46525							-0.016196549337905708
TESDKLNL	8	Unmodified	_TESDKLNL_					0	0	0			REV__L1PREC2_dup1338|chr3:98831351-98834041:-|1.380298648680358|0.2119742938869221|2.7|429.0|52|2|sense	REV__L1PREC2_dup1338|chr3:98831351-98834041:-|1.380298648680358|0.2119742938869221|2.7|429.0|52|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	460.2774658203125	2	460.24019	918.465826	-0.045825	-2.1091E-05	0.029804	1.3717E-05	-0.016021	-7.3735E-06	460.24019252572543	60.688	0.4241	60.688	60.477	60.901	0					14	9	2	0	0	0	0.028476	1	5305	5305		45.952	0	1	414020	+		56329	28609	46484	46526	61678	61678					0.0033318441828669165
TESDTAVRL	9	Unmodified	_TESDTAVRL_					0	0	0		ENSG00000067900|ENST00000399799|ROCK1	ENSG00000067900|ENST00000399799|ROCK1	ENSG00000067900|ENST00000399799|ROCK1	MULTI-MSMS	OvCa99_classI_Rep5	1	496.2574157714844	2	496.256371	990.498189	-0.21335	-0.00010588	-0.19764	-9.808E-05	-0.41099	-0.00020396	496.25618802237744	60.624	0.76118	60.624	60.352	61.113	0					50	17	4	0	0	0	0.010652	2	5314	5291;5314		166.68	67.304	1	6665800			56330	1383	46485	46527	61679;61680	61680					0.0025597182128649365
TESEEFEKL	9	Unmodified	_TESEEFEKL_					0	0	0		ENST00000482470.5_1_7:134552484-134644871:+|nuORF;nc|ENSG00000122786|Q05682-4|CALD1;nc|ENSG00000122786|Q05682-6|CALD1;nc|ENSG00000122786|Q05682-2|CALD1;ENSG00000122786|ENST00000361675|CALD1;nc|ENSG00000122786|Q05682-5|CALD1;nc|ENSG00000122786|Q05682-3|CALD1;ENST00000472096.1_1_7:134625950-134632541:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	ENST00000482470.5_1_7:134552484-134644871:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	556.2630615234375	2	556.261319	1110.50808	0.68616	0.00038168	-0.51752	-0.00028788	0.16864	9.3807E-05	556.2609822626652	72.472	1.2751	72.472	72.125	73.4	0					80	31	4	0	0	0	0.021573	2	7073	7043;7073		145.16	65.705	1	14321000			56331	3559	46486	46528	61681;61682	61682					-0.042748849640020126
TESETRILL	9	Unmodified	_TESETRILL_					0	0	0		ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	OvCa99_classI_Rep5	1	531.2972412109375	2	531.295496	1060.57644	2.1204	0.0011265	-0.55076	-0.00029262	1.5696	0.00083392	531.2951648948178	82.779	1.2348	82.779	82.394	83.629	0					64	26	3	0	0	0	0.064985	1	8596	8596		110.12	27.879	1	14817000			56332	3725	46487	46529	61683	61683					0.0485740440653899
TESETRILL	9	Unmodified	_TESETRILL_					0	0	0		ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.2963256835938	2	531.295496	1060.57644	0.27351	0.00014532	-1.5899	-0.00084469	-1.3163	-0.00069937	531.2945300274578	86.275	1.3854	83.629	83.293	84.679	-2.6463					65	27	3	0	0	0	0.10502	2	7288	7288;7300		95.815	23.938	1	500580			56333	3725	46487	46529	61684;61685	61684					0.0485740440653899
TESGLNVTL	9	Unmodified	_TESGLNVTL_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	467.2496032714844	2	467.248015	932.481476	-0.2778	-0.0001298	-0.44943	-0.00021	-0.72723	-0.00033979	467.247699847161	104.68	0.90774	104.68	104.45	105.36	0					40	20	3	0	0	0	0.062324	1	11738	11738		111.65	17.642	1	1569100			56334	7018	46488	46530	61686	61686					0.01253470935353107
TESGPPVE	8	Unmodified	_TESGPPVE_					0	0	0		nc|ENSG00000113163|Q9Y5P4-3|CERT1;nc|ENSG00000113163|Q9Y5P4-2|CERT1;ENSG00000113163|ENST00000643780|CERT1	nc|ENSG00000113163|Q9Y5P4-3|CERT1	nc|ENSG00000113163|Q9Y5P4-3|CERT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.5487976074219	2	408.192708	814.370863	0.71952	0.0002937	1.8369	0.00074981	2.5564	0.0010435	408.1929378961569	40.493	0.55312	40.493	40.2	40.754	0					21	11	3	0	0	0	0.028476	1	2442	2442		12.207	0	1	85627			56335	14965	46489	46531	61687	61687					-0.043747490528971866
TESITVVKL	9	Unmodified	_TESITVVKL_					0	0	0		ENSG00000196663|ENST00000359520|TECPR2;nc|ENSG00000196663|O15040-2|TECPR2;TECPR2|p.S766Pfs*6|1|0.06|ENSG00000196663|chr14:102435113-102435113|T/-|frameshift_variant;TECPR2|p.S415Lfs*18|1|0.15|ENSG00000196663|chr14:102431952-102431953|-/T|frameshift_variant;ENST00000561228.1_1_14:102843052-102891354:+|nuORF	ENSG00000196663|ENST00000359520|TECPR2	ENSG00000196663|ENST00000359520|TECPR2	MULTI-MSMS	OvCa99_classI_Rep5	1	495.3004150390625	2	495.297507	988.580462	1.4396	0.00071302	0.66446	0.0003291	2.104	0.0010421	495.29773512102287	92.282	0.71425	92.282	91.92	92.635	0					29	16	2	0	0	0	0.049969	2	9958	9958;9985		118.74	36.438	1	2869800			56336	8640	46490	46532	61688;61689	61688					0.08571493900228688
TESKDDPSL	9	Unmodified	_TESKDDPSL_					0	0	0		ENSG00000138646|ENST00000264350|HERC5	ENSG00000138646|ENST00000264350|HERC5	ENSG00000138646|ENST00000264350|HERC5	MULTI-MSMS	OvCa99_classI_Rep5	1	496.2321472167969	2	496.232561	990.45057	-0.573	-0.00028434	0.10574	5.2471E-05	-0.46726	-0.00023187	496.23251580986556	42.605	0.68449	42.605	42.372	43.057	0					41	15	4	0	0	0	0.049969	1	2743	2743		118.74	20.114	1	1217900			56337	4704	46491	46533	61690	61690					-0.04503727169571903
TESLVFLAEQF	11	Unmodified	_TESLVFLAEQF_					0	0	0		ENSG00000004766|ENST00000305866|VPS50;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;nc|ENSG00000004766|Q96JG6-3|VPS50;ENST00000471188.5_1_7:92970131-92979232:+|nuORF	ENSG00000004766|ENST00000305866|VPS50	ENSG00000004766|ENST00000305866|VPS50	MULTI-SECPEP	OvCa99_classI_Rep5	1	643.286376953125	2	642.329536	1282.64452	1.8216	0.0011701	3.9587	0.0025428	5.7803	0.0037129	642.3321889197132	148.52	0.44319	148.52	148.18	148.62	0					9	8	2	0	0	0	0.025638	1	17377	17377		37.812	0.65241	1	42395			56338	831	46492	46534	61691	61691					0.014502292665156347
TESNFLAIT	9	Unmodified	_TESNFLAIT_					0	0	0		tr|A0A553SN75|A0A553SN75_NIACIAminotransferaseclassV-foldPLP-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_23925PE=4SV=1	tr|A0A553SN75|A0A553SN75_NIACIAminotransferaseclassV-foldPLP-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_23925PE=4SV=1	tr|A0A553SN75|A0A553SN75_NIACIAminotransferaseclassV-foldPLP-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_23925PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.7889404296875	2	498.25584	994.497126	-0.68528	-0.00034144	1.4531	0.00072403	0.76786	0.00038259	498.2564391018148	69.218	1.4174	65.736	65.467	66.885	-3.4814					67	28	4	0	0	0	0.027447	1	5157	5157		47.657	6.8792	1	463510			56339	33907	46493	46535	61692	61692					-0.00034242547633311915
TESNFLAIT	9	Unmodified	_TESNFLAIT_					0	0	0		tr|A0A553SN75|A0A553SN75_NIACIAminotransferaseclassV-foldPLP-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_23925PE=4SV=1	tr|A0A553SN75|A0A553SN75_NIACIAminotransferaseclassV-foldPLP-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_23925PE=4SV=1	tr|A0A553SN75|A0A553SN75_NIACIAminotransferaseclassV-foldPLP-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_23925PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	498.25584	994.497126	-1.2062	-0.000601	2.5459	0.0012685	1.3397	0.0006675	498.2570706659007	68.418	1.9325	65.797	64.932	66.865	-2.6203	0.097682	0.00049017	NaN	47.657	64	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104320			56340	33907	46493	46535							-0.00034242547633311915
TESPENVAL	9	Unmodified	_TESPENVAL_					0	0	0		ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	MULTI-MSMS	OvCa99_classI_Rep5	1	480.23797607421875	2	480.237647	958.460741	2.5645	0.0012316	-0.15242	-7.3196E-05	2.4121	0.0011584	480.23746809175185	84.474	0.90948	84.474	84.177	85.087	0					33	21	2	0	0	0	0.094616	1	8814	8814		98.629	24.374	1	1978200			56341	3265	46494	46536	61693	61693					-0.020151194443315035
TESPENVAL	9	Unmodified	_TESPENVAL_					0	0	0		ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	ENSG00000117597|ENST00000491415|UTP25	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	480.237647	958.460741	-0.58726	-0.00028202	-5.6332	-0.0027053	-6.2205	-0.0029873	480.2347980638614	87.315	0.60608	84.688	84.448	85.055	-2.6269	0.10715	-0.0050135	NaN	98.629	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15899			56342	3265	46494	46536							-0.020151194443315035
TESPFKVHL	9	Unmodified	_TESPFKVHL_					0	0	0		nc|ENSG00000110713|P52948-6|NUP98;nc|ENSG00000110713|P52948-2|NUP98;ENSG00000110713|ENST00000324932|NUP98;nc|ENSG00000110713|P52948|NUP98	nc|ENSG00000110713|P52948-6|NUP98	nc|ENSG00000110713|P52948-6|NUP98	MULTI-MSMS	OvCa99_classI_Rep5	1	529.2892456054688	2	529.287474	1056.5604	1.4718	0.00077901	1.1122	0.00058868	2.584	0.0013677	529.2876536909301	80.819	1.0031	80.819	80.529	81.532	0					44	23	3	0	0	0	0.21231	1	8303	8303		74.255	14.137	1	1064700			56343	2788	46495	46537	61694	61694					0.034377429602727716
TESTARVEL	9	Unmodified	_TESTARVEL_					0	0	0		nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF	nc|ENSG00000196235|O00267-2|SUPT5H	nc|ENSG00000196235|O00267-2|SUPT5H	MULTI-MSMS	OvCa99_classI_Rep5	1	503.2650146484375	2	503.264196	1004.51384	-0.34471	-0.00017348	-0.33276	-0.00016747	-0.67747	-0.00034095	503.2639803097501	60.097	1.3682	60.097	59.533	60.901	0					92	33	4	0	0	0	0.075618	1	5230	5230		104.01	21.773	1	19859000			56344	8581	46496	46538	61695	61695					0.011762583383301717
TESTLSILFF	10	Unmodified	_TESTLSILFF_					0	0	0			REV__ENST00000542507.5_2_1:29095522-29095663:+|nuORF	REV__ENST00000542507.5_2_1:29095522-29095663:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.277587890625	2	579.308072	1156.60159	-0.30634	-0.00017746	-3.4087	-0.0019747	-3.7151	-0.0021522	579.3060265341774	105.3	0.57062	105.3	105	105.57	0					22	12	2	0	0	0	0.026752	1	11815	11815		35.618	0	1	1239000	+		56345	27383	46497	46539	61696	61696					0.029554592091017184
TETAHVLLI	9	Unmodified	_TETAHVLLI_					0	0	0			REV__ENSG00000107263|ENST00000683357|RAPGEF1	REV__ENSG00000107263|ENST00000683357|RAPGEF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.7890930175781	2	498.78985	995.565146	-0.32841	-0.00016381	-0.93942	-0.00046857	-1.2678	-0.00063238	498.78933667981374	116.43	2.9591	115.07	114.6	117.56	-1.3645					206	56	7	0	0	0	0.36502	2	10940	10940;10979		55.504	2.1089	1	3166500	+		56346	17839	46498	46540	61697;61698	61697					0.06718627103043673
TETDRHITL	9	Unmodified	_TETDRHITL_					0	0	0		nc|ENSG00000271605|Q7Z6M3-3|MILR1;ENSG00000271605|ENST00000619286|MILR1	nc|ENSG00000271605|Q7Z6M3-3|MILR1	nc|ENSG00000271605|Q7Z6M3-3|MILR1	MULTI-MSMS	OvCa99_classI_Rep5	1	543.285888671875	2	543.28292	1084.55129	-0.59092	-0.00032104	-0.057444	-3.1208E-05	-0.64836	-0.00035224	543.2828551222018	51.786	0.97772	51.786	51.544	52.522	0					32	22	2	0	0	0	0.42576	1	4027	4027		49.536	15.364	1	1149300			56347	9549	46499	46541	61699	61699					0.012393496039521779
TETLEKVSI	9	Unmodified	_TETLEKVSI_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	OvCa99_classI_Rep5	1	510.28594970703125	2	510.284597	1018.55464	1.3524	0.00069013	1.8343	0.00093604	3.1868	0.0016262	510.2854371750728	79.151	0.99779	79.151	78.668	79.666	0					61	24	4	0	0	0	0.17606	1	8029	8029		80.455	14.651	1	5866900			56348	7740	46500	46542	61700	61700					0.04610599657962666
TETMPKRL	8	Unmodified	_TETMPKRL_					0	0	0			REV__ENST00000421895.2_1_Y:20247460-20247526:-|nuORF	REV__ENST00000421895.2_1_Y:20247460-20247526:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	488.2730407714844	2	488.268227	974.521901	0.077218	3.7703E-05	0.48296	0.00023581	0.56017	0.00027352	488.26841802255313	72.811	1.8195	72.811	72.125	73.945	0					107	45	4	0	0	0	0.40148	1	7062	7062		87.754	2.3948	1	17057000	+		56349	25613	46501	46543	61701	61701					0.03362114054118592
TETQEKNTL	9	Unmodified	_TETQEKNTL_					0	0	0		ENSG00000034510|ENST00000233143|TMSB10;CON__P21752;ENST00000415070.1_1_2:236791008-236791086:-|nuORF	ENSG00000034510|ENST00000233143|TMSB10	ENSG00000034510|ENST00000233143|TMSB10	MULTI-MSMS	OvCa99_classI_Rep5	1	532.2669677734375	2	532.266936	1062.51932	-0.84421	-0.00044935	-0.030101	-1.6022E-05	-0.87431	-0.00046537	532.2669356343299	34.888	1.6248	34.888	34.632	36.257	0					93	34	7	0	0	0	0.0078313	2	1709	1709;1732		180.87	55.055	1	9669900		+	56350	1078	46502	46544	61702;61703	61702					-0.009440628698484943
TETRRVAVQN	10	Unmodified	_TETRRVAVQN_					0	0	0			REV__ENSG00000165934|ENST00000298875|CPSF2	REV__ENSG00000165934|ENST00000298875|CPSF2	MULTI-MSMS	OvCa9_classI_Rep2	2	587.3206176757812	2	587.320368	1172.62618	0.74905	0.00043993	-1.1381	-0.0006684	-0.38901	-0.00022847	587.3195769600642	29.847	0.78018	27.137	26.975	27.755	-2.7097					33	15	3	0	0	0	0.72319	1	774	774		27.882	2.3082	1	104770	+		56351	21141	46503	46545	61704	61704					0.04677532135201545
TETTEVQEKSI	11	Unmodified	_TETTEVQEKSI_					0	0	0		tr|A0A7D6VQ70|A0A7D6VQ70_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19005PE=4SV=1	tr|A0A7D6VQ70|A0A7D6VQ70_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19005PE=4SV=1	tr|A0A7D6VQ70|A0A7D6VQ70_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19005PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	632.29931640625	2	632.81699	1263.61943	2.1702	0.0013733	-4.3411	-0.0027471	-2.1709	-0.0013738	632.8140119351679	118.51	0.61014	118.51	118.16	118.77	0					29	12	3	0	0	0	0.025265	1	13597	13597		42.864	11.334	1	264140			56352	34825	46504	46546	61705	61705					-0.0018387032671398629
TETTGPMETL	10	Unmodified	_TETTGPMETL_					0	0	0			REV__ENSG00000177324|ENST00000380033|BEND2	REV__ENSG00000177324|ENST00000380033|BEND2	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.8270874023438	2	540.249897	1078.48524	1.7181	0.00092821	0.19591	0.00010584	1.914	0.0010341	540.2497755469184	79.516	1.2047	79.516	78.869	80.074	0					55	29	3	0	0	0	0.026714	1	8144	8144		42.864	12.361	1	1886400	+		56353	21999	46505	46547	61706	61706					-0.0508622735312656
TETVSLAMIER	11	Unmodified	_TETVSLAMIER_					0	0	0			REV__ENSG00000071205|ENST00000336498|ARHGAP10	REV__ENSG00000071205|ENST00000336498|ARHGAP10	MULTI-SECPEP	OvCa99_classI_Rep5	1	416.55126953125	3	417.220072	1248.63839	0.22808	9.5161E-05	-3.332	-0.0013902	-3.1039	-0.001295	417.2193237002465	33.449	0.54445	33.449	33.136	33.681	0					19	10	2	0	0	0	0.025677	1	1548	1548		25.068	4.0355	1	98244	+		56354	16900	46506	46548	61707	61707					0.024013877633478842
TEVADHIQL	9	Unmodified	_TEVADHIQL_					0	0	0		nc|ENSG00000113595|P36406-3|TRIM23;nc|ENSG00000113595|P36406-2|TRIM23;ENSG00000113595|ENST00000231524|TRIM23	nc|ENSG00000113595|P36406-3|TRIM23	nc|ENSG00000113595|P36406-3|TRIM23	MULTI-MSMS	OvCa99_classI_Rep5	1	513.2677612304688	2	513.266739	1024.51892	2.1692	0.0011134	-0.18809	-9.6539E-05	1.9811	0.0010168	513.2665067030639	82.525	0.81097	82.525	82.181	82.992	0					54	18	4	0	0	0	0.026923	2	8566	8542;8566		138.83	44.819	1	7229000			56355	2981	46507	46549	61708;61709	61709					0.007645622009476938
TEVAKRDMK	9	Unmodified	_TEVAKRDMK_					0	0	0			REV__nc|ENSG00000003402|O15519-13|CFLAR	REV__nc|ENSG00000003402|O15519-13|CFLAR	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.7823486328125	2	539.289691	1076.56483	1.9625	0.0010584	4.0281	0.0021723	5.9906	0.0032307	539.2916709907258	96.785	0.67877	96.785	96.501	97.18	0					32	15	3	0	0	0	0.027462	1	10648	10648		14.865	0.20078	1	1783300	+		56356	16373	46508	46550	61710	61710					0.02960884111530504
TEVCRLFAEDL	11	Unmodified	_TEVCRLFAEDL_					0	0	0		ENST00000358602.8_1_4:73941805-73941928:-|nuORF	ENST00000358602.8_1_4:73941805-73941928:-|nuORF	ENST00000358602.8_1_4:73941805-73941928:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	431.7560729980469	3	432.548189	1294.62274	2.1729	0.00093986	2.5463	0.0011014	4.7191	0.0020413	432.54913829052003	67.651	1.0279	64.161	63.888	64.916	-3.4902					48	20	4	0	0	0	0.025746	1	4957	4957		17.167	4.2093	1	135030			56357	10739	46509	46551	61711	61711					-0.012788987536850982
TEVCRLFAEDL	11	Unmodified	_TEVCRLFAEDL_					0	0	0		ENST00000358602.8_1_4:73941805-73941928:-|nuORF	ENST00000358602.8_1_4:73941805-73941928:-|nuORF	ENST00000358602.8_1_4:73941805-73941928:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	432.548189	1294.62274	-0.253	-0.00010943	5.2593	0.0022749	5.0063	0.0021655	432.55016956285846	66.885	2.2267	64.224	63.601	65.828	-2.661	0.031242	0.0021712	NaN	17.167	58	44	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43997			56358	10739	46509	46551							-0.012788987536850982
TEVDKILKV	9	Unmodified	_TEVDKILKV_					0	0	0		ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47;ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000545038.5_1_12:12966301-12976268:+|nuORF	ENST00000545038.5_1_12:12966301-12976268:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	522.8189697265625	2	522.818607	1043.62266	0.72552	0.00037932	-1.4454	-0.00075569	-0.71989	-0.00037637	522.8178063939572	81.805	1.8174	80.156	79.818	81.635	-1.6485					104	35	5	0	0	0	0.1944	1	6966	6966		77.318	20.597	1	670470			56359	9147	46510	46552	61712	61712					0.10259469308630287
TEVDKILKV	9	Unmodified	_TEVDKILKV_					0	0	0		ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47;ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000545038.5_1_12:12966301-12976268:+|nuORF	ENST00000545038.5_1_12:12966301-12976268:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	522.818607	1043.62266	-1.1015	-0.00057589	0.013	6.7967E-06	-1.0885	-0.00056909	522.818492369284	82.459	2.5362	80.162	79.785	82.322	-2.2963	0.05461	0.00088568	NaN	77.318	98	52	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	746810			56360	9147	46510	46552							0.10259469308630287
TEVDKILKV	9	Unmodified	_TEVDKILKV_					0	0	0		ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47;ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000545038.5_1_12:12966301-12976268:+|nuORF	ENST00000545038.5_1_12:12966301-12976268:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	522.818607	1043.62266	-0.8426	-0.00044052	-0.23211	-0.00012135	-1.0747	-0.00056188	522.8184116939674	82.688	1.6096	80.005	79.684	81.294	-2.6829	-0.10306	0.00062938	NaN	77.318	84	32	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	732710			56361	9147	46510	46552							0.10259469308630287
TEVEERGN	8	Unmodified	_TEVEERGN_					0	0	0		tr|A0A553SPG9|A0A553SPG9_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_26235PE=4SV=1	tr|A0A553SPG9|A0A553SPG9_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_26235PE=4SV=1	tr|A0A553SPG9|A0A553SPG9_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_26235PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.7750549316406	2	467.217246	932.419939	-0.67425	-0.00031502	0.82858	0.00038713	0.15433	7.2107E-05	467.2177004421245	66.361	0.53606	62.871	62.612	63.148	-3.4902					14	10	2	0	0	0	0.028476	1	4798	4798		20.947	0	1	17365			56362	34043	46511	46553	61713	61713					-0.048974607639365786
TEVEIINQQL	10	Unmodified	_TEVEIINQQL_					0	0	0		MACF1-CMTM4|1|fusion;MACF1-CMTM4|2|fusion;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1	MACF1-CMTM4|1|fusion;nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OvCa99_classI_Rep5	1	593.8221435546875	2	593.819335	1185.62412	1.5539	0.00092275	0.25189	0.00014958	1.8058	0.0010723	593.8193492586056	111.95	0.73676	111.95	111.65	112.39	0					34	15	3	0	0	0	0.22511	1	12746	12746		90.601	17.722	1	915240			56363	15005;14812	46512	46554	61714	61714					0.03873058606723134
TEVEIINQQL	10	Unmodified	_TEVEIINQQL_					0	0	0		MACF1-CMTM4|1|fusion;MACF1-CMTM4|2|fusion;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1	MACF1-CMTM4|1|fusion;nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OvCa9_classI_Rep2	2	593.820068359375	2	593.819335	1185.62412	-0.30051	-0.00017845	0.10235	6.078E-05	-0.19815	-0.00011767	593.8193214479901	110.88	1.6772	110.74	110.29	111.96	-0.13961					90	33	4	0	0	0	0.32141	4	10446	10446;10459;10464;10471		78.264	16.691	1	215050			56364	15005;14812	46512	46554	61715;61716;61717;61718	61715					0.03873058606723134
TEVEIINQQL	10	Unmodified	_TEVEIINQQL_					0	0	0		MACF1-CMTM4|1|fusion;MACF1-CMTM4|2|fusion;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1	MACF1-CMTM4|1|fusion;nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OvCa9_classI_Rep3	3	593.8185424804688	2	593.819335	1185.62412	1.5745	0.00093498	-1.9001	-0.0011283	-0.32556	-0.00019332	593.818136379388	111.59	1.6787	110.48	110.15	111.83	-1.1038					82	33	4	0	0	0	0.020903	6	8105	8101;8105;8112;8119;8126;8132		146.79	61.625	1	373200			56365	15005;14812	46512	46554	61719;61720;61721;61722;61723;61724	61720					0.03873058606723134
TEVEIINQQL	10	Unmodified	_TEVEIINQQL_					0	0	0		MACF1-CMTM4|1|fusion;MACF1-CMTM4|2|fusion;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1	MACF1-CMTM4|1|fusion;nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	593.8199462890625	2	593.819335	1185.62412	0.65402	0.00038837	-0.91886	-0.00054564	-0.26484	-0.00015727	593.8187366630715	111.96	1.8282	110.45	110.16	111.99	-1.5111					89	35	4	0	0	0	0.019022	2	10334	10326;10334		148.99	50.405	1	383640			56366	15005;14812	46512	46554	61725;61726	61726					0.03873058606723134
TEVGEKIAL	9	Unmodified	_TEVGEKIAL_					0	0	0		ENSG00000130741|ENST00000253039|EIF2S3;ENSG00000180574|ENST00000538173|EIF2S3B;ENST00000460032.1_1_X:24091216-24091381:+|nuORF	ENSG00000130741|ENST00000253039|EIF2S3	ENSG00000130741|ENST00000253039|EIF2S3	MULTI-MSMS	OvCa99_classI_Rep5	1	480.2746887207031	2	480.274032	958.533512	2.1704	0.0010424	-0.85663	-0.00041141	1.3138	0.00063097	480.27366774358194	77.359	1.8665	77.359	77.044	78.911	0					130	44	5	0	0	0	0.075543	4	7804	7774;7804;7834;7859		104.06	15.826	1	54701000			56367	4008	46513	46555	61727;61728;61729;61730	61728					0.05258634349092972
TEVGEKIAL	9	Unmodified	_TEVGEKIAL_					0	0	0		ENSG00000130741|ENST00000253039|EIF2S3;ENSG00000180574|ENST00000538173|EIF2S3B;ENST00000460032.1_1_X:24091216-24091381:+|nuORF	ENSG00000130741|ENST00000253039|EIF2S3	ENSG00000130741|ENST00000253039|EIF2S3	MULTI-MSMS	OvCa9_classI_Rep2	2	480.27301025390625	2	480.274032	958.533512	-0.0060536	-2.9074E-06	-0.56415	-0.00027095	-0.5702	-0.00027385	480.27371035695916	79.242	2.6823	77.502	76.092	78.774	-1.7398					165	52	5	0	0	0	0.046778	6	6665	6634;6640;6646;6657;6665;6672		120.87	35.708	1	1317200			56368	4008	46513	46555	61731;61732;61733;61734;61735;61736	61735					0.05258634349092972
TEVGEKIAL	9	Unmodified	_TEVGEKIAL_					0	0	0		ENSG00000130741|ENST00000253039|EIF2S3;ENSG00000180574|ENST00000538173|EIF2S3B;ENST00000460032.1_1_X:24091216-24091381:+|nuORF	ENSG00000130741|ENST00000253039|EIF2S3	ENSG00000130741|ENST00000253039|EIF2S3	MULTI-MSMS	OvCa9_classI_Rep3	3	480.27459716796875	2	480.274032	958.533512	0.45216	0.00021716	-1.1509	-0.00055277	-0.69878	-0.0003356	480.27339827720505	79.417	2.0792	77.077	76.705	78.785	-2.3399					143	40	6	0	0	0	0.066102	6	4290	4278;4284;4290;4296;4302;4308		109.48	21.724	1	3497600			56369	4008	46513	46555	61737;61738;61739;61740;61741;61742	61739					0.05258634349092972
TEVGEKIAL	9	Unmodified	_TEVGEKIAL_					0	0	0		ENSG00000130741|ENST00000253039|EIF2S3;ENSG00000180574|ENST00000538173|EIF2S3B;ENST00000460032.1_1_X:24091216-24091381:+|nuORF	ENSG00000130741|ENST00000253039|EIF2S3	ENSG00000130741|ENST00000253039|EIF2S3	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.274658203125	2	480.274032	958.533512	0.1588	7.6269E-05	-0.74899	-0.00035972	-0.59019	-0.00028345	480.2734632624292	75.558	1.8618	72.619	72.112	73.974	-2.9389					80	38	4	0	0	0	0.13504	1	5966	5966		87.696	7.2418	1	1171200			56370	4008	46513	46555	61743	61743					0.05258634349092972
TEVGEKIAL	9	Unmodified	_TEVGEKIAL_					0	0	0		ENSG00000130741|ENST00000253039|EIF2S3;ENSG00000180574|ENST00000538173|EIF2S3B;ENST00000460032.1_1_X:24091216-24091381:+|nuORF	ENSG00000130741|ENST00000253039|EIF2S3	ENSG00000130741|ENST00000253039|EIF2S3	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.2744140625	2	480.274032	958.533512	-0.60525	-0.00029068	-0.16153	-7.758E-05	-0.76678	-0.00036826	480.27392490834393	80.008	1.8075	77.257	76.891	78.698	-2.7514					121	36	5	0	0	0	0.084918	6	6517	6517;6529;6542;6554;6568;6581		101.25	15.257	1	3550800			56371	4008	46513	46555	61744;61745;61746;61747;61748;61749	61744					0.05258634349092972
TEVIFKVAL	9	Unmodified	_TEVIFKVAL_					0	0	0		ENSG00000065882|ENST00000698857|TBC1D1;nc|ENSG00000065882|Q86TI0|TBC1D1;ENST00000401554.5_1_4:38112345-38138953:+|nuORF;ENST00000407365.5_1_4:38113700-38138953:+|nuORF;nc|ENSG00000136111|O60343-4|TBC1D4;nc|ENSG00000136111|O60343-5|TBC1D4;nc|ENSG00000136111|O60343-2|TBC1D4;nc|ENSG00000136111|O60343-3|TBC1D4;ENSG00000136111|ENST00000377636|TBC1D4	ENSG00000065882|ENST00000698857|TBC1D1;nc|ENSG00000136111|O60343-4|TBC1D4	ENSG00000065882|ENST00000698857|TBC1D1	MULTI-MSMS	OvCa99_classI_Rep5	1	510.31298828125	2	510.310418	1018.60628	2.0205	0.0010311	0.52443	0.00026762	2.5449	0.0012987	510.31052096653195	118.03	1.7745	118.03	117.65	119.43	0					107	37	4	0	0	0	0.13504	4	13520	13520;13543;13567;13593		87.696	27.578	1	1138000			56372	1338;4458	46514	46556	61750;61751;61752;61753	61750					0.09772388142516775
TEVIHTGTL	9	Unmodified	_TEVIHTGTL_					0	0	0		nc|ENSG00000213020|Q8N823-2|ZNF611;ENSG00000213020|ENST00000652185|ZNF611;nc|ENSG00000189190|Q6ZNG1|ZNF600;ENSG00000189190|ENST00000692063|ZNF600;nc|ENSG00000293246|Q8N8H1|ZNF321P;nc|ENSG00000204604|Q5VIY5-2|ZNF468;ENSG00000203326|ENST00000474037|ZNF525;ZNF468|p.K353Nfs*131|1|0.04|ENSG00000204604|chr19:52841238-52841238|C/-|frameshift_variant;ENSG00000182986|ENST00000682928|ZNF320;ENSG00000204604|ENST00000595646|ZNF468;ENSG00000213799|ENST00000458035|ZNF845;ENSG00000213793|ENST00000638862|ZNF888	nc|ENSG00000213020|Q8N823-2|ZNF611;ENSG00000213793|ENST00000638862|ZNF888	nc|ENSG00000213020|Q8N823-2|ZNF611	MULTI-MSMS	OvCa99_classI_Rep5	1	485.7660217285156	2	485.763832	969.513111	-0.20205	-9.815E-05	0.33387	0.00016218	0.13182	6.4034E-05	485.7637784684313	68.67	0.82938	68.67	68.398	69.228	0					40	19	3	0	0	0	0.047062	1	6492	6492		120.62	6.0352	1	2726800			56373	8544;9148	46515	46557	61754	61754					0.027134636893038078
TEVIHTGTL	9	Unmodified	_TEVIHTGTL_					0	0	0		nc|ENSG00000213020|Q8N823-2|ZNF611;ENSG00000213020|ENST00000652185|ZNF611;nc|ENSG00000189190|Q6ZNG1|ZNF600;ENSG00000189190|ENST00000692063|ZNF600;nc|ENSG00000293246|Q8N8H1|ZNF321P;nc|ENSG00000204604|Q5VIY5-2|ZNF468;ENSG00000203326|ENST00000474037|ZNF525;ZNF468|p.K353Nfs*131|1|0.04|ENSG00000204604|chr19:52841238-52841238|C/-|frameshift_variant;ENSG00000182986|ENST00000682928|ZNF320;ENSG00000204604|ENST00000595646|ZNF468;ENSG00000213799|ENST00000458035|ZNF845;ENSG00000213793|ENST00000638862|ZNF888	nc|ENSG00000213020|Q8N823-2|ZNF611;ENSG00000213793|ENST00000638862|ZNF888	nc|ENSG00000213020|Q8N823-2|ZNF611	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	485.763832	969.513111	-1.0353	-0.00050291	0.60907	0.00029586	-0.42623	-0.00020705	485.7641036975543	71.927	0.48203	68.471	68.222	68.704	-3.4563	-0.099456	0.00016629	NaN	120.62	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104380			56374	8544;9148	46515	46557							0.027134636893038078
TEVKKIYKL	9	Unmodified	_TEVKKIYKL_					0	0	0		nc|ENSG00000144034|Q9Y3C4-2|TPRKB;ENSG00000144034|ENST00000272424|TPRKB;nc|ENSG00000144034|Q9Y3C4-3|TPRKB	nc|ENSG00000144034|Q9Y3C4-2|TPRKB	nc|ENSG00000144034|Q9Y3C4-2|TPRKB	MULTI-MSMS	OvCa9_classI_Rep2	2	561.3494873046875	2	561.350074	1120.6856	-0.77618	-0.00043571	0.41477	0.00023283	-0.36142	-0.00020288	561.3501695701004	52.382	2.6274	49.569	49.096	51.723	-2.8129					119	52	4	0	0	0	0.12515	8	3495	3474;3477;3483;3489;3495;3503;3510;3516		90.37	38.964	1	572760			56375	5122	46516	46558	61755;61756;61757;61758;61759;61760;61761;61762	61759					0.13008035096640924
TEVKKIYKL	9	Unmodified	_TEVKKIYKL_					0	0	0		nc|ENSG00000144034|Q9Y3C4-2|TPRKB;ENSG00000144034|ENST00000272424|TPRKB;nc|ENSG00000144034|Q9Y3C4-3|TPRKB	nc|ENSG00000144034|Q9Y3C4-2|TPRKB	nc|ENSG00000144034|Q9Y3C4-2|TPRKB	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.3513793945312	2	561.350074	1120.6856	0.5264	0.00029549	-0.7301	-0.00040984	-0.20371	-0.00011435	561.3495658531364	52.882	2.2833	49.674	49.247	51.53	-3.208					110	44	4	0	0	0	0.12515	5	3193	3184;3193;3206;3221;3233		90.37	38.842	1	737060			56376	5122	46516	46558	61763;61764;61765;61766;61767	61764					0.13008035096640924
TEVKRKTQL	9	Unmodified	_TEVKRKTQL_					0	0	0			REV__ENST00000263851.8_2_8:79717356-79717452:-|nuORF	REV__ENST00000263851.8_2_8:79717356-79717452:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.8350830078125	2	551.83258	1101.65061	-0.20291	-0.00011197	3.4203	0.0018874	3.2174	0.0017755	551.8344006629158	102.04	1.2572	99.84	99.522	100.78	-2.1994					65	23	4	0	0	0	0.14998	1	9171	9171		84.916	13.038	1	458490	+		56377	24007	46517	46559	61768	61768					0.10384792288709832
TEVLESFKL	9	Unmodified	_TEVLESFKL_					0	0	0		ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	MULTI-MSMS	OvCa99_classI_Rep5	1	533.2966918945312	2	533.294965	1064.57538	2.0094	0.0010716	-0.004305	-2.2958E-06	2.0051	0.0010693	533.2948558627905	110.81	0.75182	110.81	110.54	111.29	0					30	16	2	0	0	0	0.035142	2	12578	12578;12601		131.03	26.97	1	959540			56378	2382	46518	46560	61769;61770	61769					0.04567190037619184
TEVLESFKL	9	Unmodified	_TEVLESFKL_					0	0	0		ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.293701171875	2	533.294965	1064.57538	-0.6818	-0.0003636	0.31787	0.00016952	-0.36393	-0.00019408	533.2948372448574	112.01	2.005	110.5	109.68	111.69	-1.5111					109	38	4	0	0	0	0.1149	3	10330	10330;10342;10355		93.143	26.716	1	179830			56379	2382	46518	46560	61771;61772;61773	61771					0.04567190037619184
TEVLESFKL	9	Unmodified	_TEVLESFKL_					0	0	0		ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	MULTI-MATCH	OvCa9_classI_Rep2	2		2	533.294965	1064.57538	-0.79889	-0.00042604	0.52063	0.00027765	-0.27826	-0.00014839	533.2950442530208	110.74	1.4802	110.6	110.19	111.67	-0.13961	-0.011056	0.00087881	NaN	131.03	89	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136710			56380	2382	46518	46560							0.04567190037619184
TEVLESFKL	9	Unmodified	_TEVLESFKL_					0	0	0		ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	ENSG00000104613|ENST00000397977|INTS10	MULTI-MATCH	OvCa9_classI_Rep3	3		2	533.294965	1064.57538	2.0576	0.0010973	-2.3251	-0.00124	-0.26757	-0.00014269	533.2935394330228	111.65	1.4326	110.54	110.05	111.48	-1.1038	-0.068973	-0.0021564	NaN	131.03	89	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	147370			56381	2382	46518	46560							0.04567190037619184
TEVLKPRTL	9	Unmodified	_TEVLKPRTL_					0	0	0		ENSG00000129596|ENST00000250535|CDO1	ENSG00000129596|ENST00000250535|CDO1	ENSG00000129596|ENST00000250535|CDO1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.7444458007812	2	528.824224	1055.63389	2.0288	0.0010729	-0.23952	-0.00012666	1.7893	0.00094623	528.8240946978354	106.62	0.40028	106.62	106.36	106.76	0					15	8	2	0	0	0	0.027462	1	12004	12004		32.812	0	1	218230			56382	3938	46519	46561	61774	61774					0.10830291402771763
TEVLKTHGL	9	Unmodified	_TEVLKTHGL_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.2891845703125	2	499.287474	996.560395	-0.4466	-0.00022298	0.11968	5.9756E-05	-0.32692	-0.00016323	499.2873122359563	58.517	1.9379	55.125	54.701	56.639	-3.392					78	38	4	0	0	0	0.12515	1	3851	3851		90.37	28.262	1	357520			56383	4978	46520	46562	61775	61775					0.061977429602734446
TEVLKTHGLL	10	Unmodified	_TEVLKTHGLL_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.8308715820312	2	555.829506	1109.64446	0.1637	9.0988E-05	-1.1706	-0.00065064	-1.0069	-0.00055965	555.8288820198472	77.289	1.5992	74.472	74.096	75.696	-2.8165					85	32	4	0	0	0	0.28845	1	6179	6179		82.241	31.048	1	353760			56384	4978	46521	46563	61776	61776					0.09402274057174509
TEVLKTHGLL	10	Unmodified	_TEVLKTHGLL_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	555.829506	1109.64446	0.013019	7.2363E-06	-0.79447	-0.00044159	-0.78145	-0.00043435	555.8289169482324	76.223	1.4639	74.369	73.991	75.455	-1.854	0.061883	-0.0004973	NaN	82.241	78	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	286370			56385	4978	46521	46563							0.09402274057174509
TEVLKTHGLL	10	Unmodified	_TEVLKTHGLL_					0	0	0		ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	ENSG00000142541|ENST00000391857|RPL13A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	555.829506	1109.64446	-1.2213	-0.00067884	0.25953	0.00014426	-0.96178	-0.00053458	555.8296559582628	76.452	1.9064	74.08	73.773	75.679	-2.3715	-0.22696	0.00067439	NaN	82.241	102	36	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	360340			56386	4978	46521	46563							0.09402274057174509
TEVLLPIVK	9	Unmodified	_TEVLLPIVK_					0	0	0		nc|ENSG00000112282|Q9ULK4-4|MED23;nc|ENSG00000112282|Q9ULK4-5|MED23;nc|ENSG00000112282|Q9ULK4-3|MED23;ENSG00000112282|ENST00000368068|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	nc|ENSG00000112282|Q9ULK4-4|MED23	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.30255126953125	2	506.326068	1010.63758	-0.39887	-0.00020196	1.2381	0.0006269	0.83927	0.00042494	506.32587264550034	114.52	0.69087	114.41	114.16	114.85	-0.11777					38	13	4	0	0	0	0.027462	1	10890	10890		34.173	11.13	1	51457			56387	2892	46522	46564	61777	61777					0.13268961176606808
TEVNIPYDV	9	Unmodified	_TEVNIPYDV_					0	0	0			REV__tr|A0A553SPC1|A0A553SPC1_NIACIDUF177domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26045PE=4SV=1	REV__tr|A0A553SPC1|A0A553SPC1_NIACIDUF177domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26045PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.7648315429688	2	525.261122	1048.50769	-0.36307	-0.00019071	-2.8188	-0.0014806	-3.1819	-0.0016713	525.7637097829612	64.427	3.1646	60.952	60.49	63.655	-3.475					179	64	5	0	0	0	0.59259	1	4661	4661		32.812	2.3088	1	5640000	+		56388	30521	46523	46565	61778	61778					-0.014622598931964603
TEVRELVSL	9	Unmodified	_TEVRELVSL_					0	0	0		ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	ENSG00000136026|ENST00000378026|CKAP4	MULTI-MSMS	OvCa99_classI_Rep5	1	523.300048828125	2	523.298039	1044.58152	1.7069	0.00089324	0.31965	0.00016727	2.0266	0.0010605	523.2981318011693	95.309	2.0614	95.309	94.905	96.966	0					117	48	5	0	0	0	0.033166	1	10385	10385		132.76	31.157	1	15533000			56389	4448	46524	46566	61779	61779					0.061017082691250835
TEVRFVTAIL	10	Unmodified	_TEVRFVTAIL_					0	0	0		ENST00000505213.5_2_13:33112806-33112938:-|nuORF	ENST00000505213.5_2_13:33112806-33112938:-|nuORF	ENST00000505213.5_2_13:33112806-33112938:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	574.838134765625	2	574.837331	1147.66011	-0.87533	-0.00050317	0.20724	0.00011913	-0.66808	-0.00038404	574.8373813616681	91.362	5.8049	88.819	88.449	94.254	-2.5425					226	116	5	0	0	0	0.59317	1	7896	7896		42.864	2.0861	1	3993100			56390	12891	46525	46567	61780	61780					0.09218560574208823
TEVRGGPGR	9	Unmodified	_TEVRGGPGR_					0	0	0		ENST00000375850.3_2_9:91606499-91606832:+|nuORF	ENST00000375850.3_2_9:91606499-91606832:+|nuORF	ENST00000375850.3_2_9:91606499-91606832:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	463.82440185546875	2	464.75159	927.488627	2.2999	0.0010689	3.897	0.0018111	6.1969	0.00288	464.7530672717125	76.402	0.76221	76.402	75.68	76.443	0					21	18	2	0	0	0	0.027462	1	7637	7637		24.519	0.31644	1	254390			56391	11060	46526	46568	61781	61781					0.02198248326430985
TEVSKVPSL	9	Unmodified	_TEVSKVPSL_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000534048.1_1_11:44151622-44219579:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	OvCa99_classI_Rep5	1	480.28192138671875	2	480.274032	958.533512	0.012097	5.8097E-06	3.9734	0.0019083	3.9855	0.0019141	480.2738764674431	73.032	1.1838	73.032	72.533	73.717	0					99	29	6	0	0	0	0.1243	2	7165	7135;7165		90.601	13.827	1	5282700			56392	5548	46527	46569	61782;61783	61783					0.05258634349092972
TEVSKVPSL	9	Unmodified	_TEVSKVPSL_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000534048.1_1_11:44151622-44219579:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	OvCa9_classI_Rep2	2	480.2730712890625	2	480.274032	958.533512	-0.743	-0.00035684	0.81724	0.0003925	0.074245	3.5658E-05	480.27422408083294	74.673	1.8796	72.702	71.693	73.572	-1.9711					57	35	2	0	0	0	0.2077	1	6127	6127		75.043	10.836	1	332260			56393	5548	46527	46569	61784	61784					0.05258634349092972
TEVSKVPSL	9	Unmodified	_TEVSKVPSL_					0	0	0		ENSG00000151348|ENST00000533608|EXT2;nc|ENSG00000151348|Q93063-2|EXT2;nc|ENSG00000151348|Q93063-3|EXT2;ENST00000534048.1_1_11:44151622-44219579:+|nuORF	ENSG00000151348|ENST00000533608|EXT2	ENSG00000151348|ENST00000533608|EXT2	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.2744140625	2	480.274032	958.533512	0.1588	7.6269E-05	-0.74899	-0.00035972	-0.59019	-0.00028345	480.2734632624292	75.558	1.8618	72.619	72.112	73.974	-2.9389					80	38	4	0	0	0	0.046778	2	5954	5954;5979		120.87	38.628	1	1171200			56394	5548	46527	46569	61785;61786	61785					0.05258634349092972
TEVVEAVTL	9	Unmodified	_TEVVEAVTL_					0	0	0			REV__VCL-ADK|12|fusion	REV__VCL-ADK|12|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.24725341796875	2	480.76604	959.517527	-0.77941	-0.00037471	3.336	0.0016039	2.5566	0.0012291	480.76752309752897	81.012	0.53987	78.301	78.15	78.69	-2.7106					16	10	2	0	0	0	0.027462	1	6635	6635		44.117	0	1	68511	+		56395	32754	46528	46570	61787	61787					0.036149281121993226
TEVVEAVTL	9	Unmodified	_TEVVEAVTL_					0	0	0			REV__VCL-ADK|12|fusion	REV__VCL-ADK|12|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	480.76604	959.517527	0.09732	4.6788E-05	2.5977	0.0012489	2.695	0.0012957	480.7672579554515	80.161	0.94472	78.466	78.173	79.118	-1.6951	0.15891	-0.0017702	NaN	42.396	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27258	+		56396	32754	46528	46570							0.036149281121993226
TEWEKVAQL	9	Unmodified	_TEWEKVAQL_					0	0	0		nc|ENSG00000175416|P09497-2|CLTB;ENSG00000175416|ENST00000310418|CLTB	nc|ENSG00000175416|P09497-2|CLTB	nc|ENSG00000175416|P09497-2|CLTB	MULTI-MSMS	OvCa9_classI_Rep2	2	552.2909545898438	2	552.290214	1102.56587	0.37749	0.00020848	-0.94282	-0.00052071	-0.56534	-0.00031223	552.289583129945	94.637	2.6154	93.537	93.165	95.78	-1.0995					119	52	4	0	0	0	0.1149	2	8484	8479;8484		93.143	10.393	1	486490			56397	7543	46529	46571	61788;61789	61789					0.018694217520987877
TEWEKVAQL	9	Unmodified	_TEWEKVAQL_					0	0	0		nc|ENSG00000175416|P09497-2|CLTB;ENSG00000175416|ENST00000310418|CLTB	nc|ENSG00000175416|P09497-2|CLTB	nc|ENSG00000175416|P09497-2|CLTB	MULTI-MSMS	OvCa9_classI_Rep3	3	552.291748046875	2	552.290214	1102.56587	-1.1588	-0.00064001	0.82653	0.00045649	-0.3323	-0.00018352	552.2905916084751	95.456	2.4235	93.56	93.211	95.634	-1.8956					111	47	4	0	0	0	0.075543	3	6218	6218;6223;6229		104.06	13.687	1	606030			56398	7543	46529	46571	61790;61791;61792	61790					0.018694217520987877
TEWEKVAQL	9	Unmodified	_TEWEKVAQL_					0	0	0		nc|ENSG00000175416|P09497-2|CLTB;ENSG00000175416|ENST00000310418|CLTB	nc|ENSG00000175416|P09497-2|CLTB	nc|ENSG00000175416|P09497-2|CLTB	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.2919311523438	2	552.290214	1102.56587	-0.038714	-2.1381E-05	-0.47225	-0.00026082	-0.51096	-0.0002822	552.2898704269146	96.015	2.273	93.589	93.304	95.577	-2.4256					110	44	3	0	0	0	0.094791	3	8464	8453;8464;8490		98.582	21.264	1	556830			56399	7543	46529	46571	61793;61794;61795	61794					0.018694217520987877
TEWLMLKW	8	Unmodified	_TEWLMLKW_					0	0	0			REV__ENST00000377365.3_1_5:169311350-169311434:-|nuORF	REV__ENST00000377365.3_1_5:169311350-169311434:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	553.7874755859375	2	553.788795	1105.56304	-0.8302	-0.00045975	-0.75263	-0.0004168	-1.5828	-0.00087655	553.7880545986807	28.167	0.39915	28.167	27.941	28.34	0					20	7	4	0	0	0	0.66704	1	899	899		50.025	7.5501	1	132390	+		56400	25119	46530	46572	61796	61796					0.014478750935722928
TEWLMLKW	8	Unmodified	_TEWLMLKW_					0	0	0			REV__ENST00000377365.3_1_5:169311350-169311434:-|nuORF	REV__ENST00000377365.3_1_5:169311350-169311434:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	553.788795	1105.56304	-0.8302	-0.00045975	-0.75263	-0.0004168	-1.5828	-0.00087655	553.7880545986807	28.167	0.39915	28.167	27.941	28.34	0	0	0	NaN	50.025	20	7	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132390	+		56401	25119	46530	46572							0.014478750935722928
TEYDDEEFLRY	11	Unmodified	_TEYDDEEFLRY_					0	0	0		HCRTR2|p.D33E|1|0.12|ENSG00000137252|chr6:55174686-55174686|C/G|missense_variant	HCRTR2|p.D33E|1|0.12|ENSG00000137252|chr6:55174686-55174686|C/G|missense_variant	HCRTR2|p.D33E|1|0.12|ENSG00000137252|chr6:55174686-55174686|C/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.69708251953125	3	493.880661	1478.62015	0.37776	0.00018657	-2.097	-0.0010357	-1.7192	-0.0008491	494.213568254413	45.518	0.56152	45.518	45.373	45.934	0					15	12	2	0	0	0	0.026277	1	3160	3160		12.957	0	1	168130			56402	14391	46531	46573	61797	61797					-0.10001075677678273
TEYEDEKTL	9	Unmodified	_TEYEDEKTL_					0	0	0		ENSG00000164252|ENST00000312916|AGGF1	ENSG00000164252|ENST00000312916|AGGF1	ENSG00000164252|ENST00000312916|AGGF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.7975463867188	2	564.258776	1126.503	1.0625	0.00059952	-1.1895	-0.00067119	-0.12701	-7.1666E-05	564.2579720897106	58.767	0.95026	55.375	55.101	56.051	-3.392					41	18	3	0	0	0	0.027462	1	3887	3887		35.152	16.828	1	103440			56403	6436	46532	46574	61798	61798					-0.05519188826588106
TEYEDEKTL	9	Unmodified	_TEYEDEKTL_					0	0	0		ENSG00000164252|ENST00000312916|AGGF1	ENSG00000164252|ENST00000312916|AGGF1	ENSG00000164252|ENST00000312916|AGGF1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	564.258776	1126.503	-0.26704	-0.00015068	0.40021	0.00022582	0.13317	7.5142E-05	564.258825310551	58.42	0.60304	55.64	55.285	55.888	-2.7801	0.13232	0.0013848	NaN	35.152	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21172			56404	6436	46532	46574							-0.05519188826588106
TEYKPPSPSR	10	Unmodified	_TEYKPPSPSR_					0	0	0		ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	OvCa9_classI_Rep4_	4	581.3017578125	2	581.29857	1160.58259	2.7822	0.0016173	0.29881	0.0001737	3.081	0.001791	581.2986491544626	133.55	1.0792	132.03	131.76	132.83	-1.5257					49	21	3	0	0	0	0.61634	1	12891	12891		40.058	1.0367	1	91576			56405	6011	46533	46575	61799	61799					0.00871922638043543
TEYKPPSPSR	10	Unmodified	_TEYKPPSPSR_					0	0	0		ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-MATCH	OvCa9_classI_Rep2	2		2	581.29857	1160.58259	0.14993	8.7157E-05	3.1508	0.0018316	3.3008	0.0019187	581.3002732326054	132.26	0.9353	132.04	131.78	132.72	-0.22697	-0.019728	0.0006368	NaN	40.058	43	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	74684			56406	6011	46533	46575							0.00871922638043543
TEYKPPSPSR	10	Unmodified	_TEYKPPSPSR_					0	0	0		ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-MATCH	OvCa9_classI_Rep3	3		2	581.29857	1160.58259	-1.4023	-0.00081515	4.5973	0.0026724	3.195	0.0018573	581.3010674624608	133.23	0.93123	132.1	131.83	132.76	-1.1249	0.047039	0.0023185	NaN	40.058	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61170			56407	6011	46533	46575							0.00871922638043543
TEYPLVINTL	10	Unmodified	_TEYPLVINTL_					0	0	0		ENSG00000173852|ENST00000638088|DPY19L1;nc|ENSG00000173852|Q2PZI1|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	MULTI-MSMS	OvCa9_classI_Rep2	2	581.8212280273438	2	581.821347	1161.62814	-0.57827	-0.00033645	0.58294	0.00033916	0.0046646	2.714E-06	581.821625248966	136.1	1.0308	135.88	135.52	136.55	-0.22697					44	20	3	0	0	0	0.45822	2	13531	13525;13531		60.118	6.4799	1	81744			56408	7422	46534	46576	61800;61801	61801					0.053791481004282105
TEYPLVINTL	10	Unmodified	_TEYPLVINTL_					0	0	0		ENSG00000173852|ENST00000638088|DPY19L1;nc|ENSG00000173852|Q2PZI1|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	MULTI-MSMS	OvCa9_classI_Rep3	3	581.8212280273438	2	581.821347	1161.62814	-2.3113	-0.0013447	2.0904	0.0012162	-0.2209	-0.00012852	581.8225826279196	136.77	1.3143	135.69	135.36	136.68	-1.0858					56	26	3	0	0	0	0.59317	2	11123	11112;11123		42.864	8.5645	1	78530			56409	7422	46534	46576	61802;61803	61803					0.053791481004282105
TEYPLVINTL	10	Unmodified	_TEYPLVINTL_					0	0	0		ENSG00000173852|ENST00000638088|DPY19L1;nc|ENSG00000173852|Q2PZI1|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	ENSG00000173852|ENST00000638088|DPY19L1	MULTI-MSMS	OvCa9_classI_Rep4_	4	581.821044921875	2	581.821347	1161.62814	1.4281	0.00083087	-1.7352	-0.0010096	-0.30712	-0.00017869	581.820406598656	137.16	1.0973	135.62	135.27	136.37	-1.5437					52	22	3	0	0	0	0.6349	1	13350	13350		37.812	0.65241	1	91028			56410	7422	46534	46576	61804	61804					0.053791481004282105
TEYRRQVQSL	10	Unmodified	_TEYRRQVQSL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa9_classI_Rep2	2	427.2298278808594	3	427.229959	1278.66805	-1.4138	-0.00060401	1.3017	0.00055611	-0.11213	-4.7903E-05	427.2304810859985	51.934	1.8295	49.121	48.7	50.53	-2.8129					82	36	3	0	0	0	0.64697	1	3444	3444		36.447	0.12911	1	324920			56411	1049	46535	46577	61805	61805					0.0398608782370502
TEYRRQVQSL	10	Unmodified	_TEYRRQVQSL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa9_classI_Rep4_	4	427.2303771972656	3	427.229959	1278.66805	-0.01463	-6.2504E-06	-0.45227	-0.00019322	-0.4669	-0.00019947	427.2298088324876	52.277	2.9375	49.069	48.387	51.324	-3.208					112	57	3	0	0	0	0.48398	3	3135	3113;3123;3135		56.434	13.381	1	1654000			56412	1049	46535	46577	61806;61807;61808	61808					0.0398608782370502
TEYRRQVQSL	10	Unmodified	_TEYRRQVQSL_					0	0	0		ENSG00000026025|ENST00000544301|VIM;ENST00000421459.2_2_10:17272631-17276850:+|nuORF	ENSG00000026025|ENST00000544301|VIM	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa9_classI_Rep4_	4	640.3417358398438	2	640.341301	1278.66805	-0.074961	-4.8E-05	-0.29334	-0.00018784	-0.3683	-0.00023584	640.3411241833008	52.277	2.1733	49.069	48.742	50.915	-3.208					129	42	5	0	0	0	0.58667	1	3133	3133		24.519	0	1	2332400			56413	1049	46535	46577	61809	61809					0.0398608782370502
TEYSLREVP	9	Unmodified	_TEYSLREVP_					0	0	0		ENSG00000146350|ENST00000398212|TBC1D32;nc|ENSG00000146350|Q96NH3-4|TBC1D32;ENST00000398197.6_1_6:121482190-121544486:-|nuORF;ENST00000464622.5_1_6:121513684-121545514:-|nuORF	ENSG00000146350|ENST00000398212|TBC1D32	ENSG00000146350|ENST00000398212|TBC1D32	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.3302001953125	2	547.279846	1092.54514	-0.96523	-0.00052825	0.59137	0.00032364	-0.37386	-0.0002046	547.2802836269666	106.25	0.7149	104.23	103.95	104.66	-2.0161					20	13	2	0	0	0	0.027461	1	9665	9665		49.442	21.559	1	25537			56414	5284	46536	46578	61810	61810					0.0025683137246232945
TEYVFELD	8	Unmodified	_TEYVFELD_					0	0	0			REV__ENSG00000135108|ENST00000622495|FBXO21	REV__ENSG00000135108|ENST00000622495|FBXO21	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.2742919921875	2	508.234573	1014.45459	-0.23867	-0.0001213	1.7672	0.00089814	1.5285	0.00077683	508.7347256623945	108.22	0.41733	107.02	106.85	107.27	-1.1978					10	7	2	0	0	0	0.028476	1	7705	7705		31.955	0	1	14748	+		56415	19259	46537	46579	61811	61811					-0.05205637675851449
TFAEWKVDM	9	Unmodified	_TFAEWKVDM_					0	0	0		ENSG00000198951|ENST00000396398|NAGA	ENSG00000198951|ENST00000396398|NAGA	ENSG00000198951|ENST00000396398|NAGA	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.2061157226562	2	563.765517	1125.51648	2.4984	0.0014085	-2.7637	-0.0015581	-0.2653	-0.00014956	564.2661267194371	110.8	0.22108	110.8	110.67	110.89	0					5	4	2	0	0	0	0.027462	1	12575	12575		20.947	0	1	60593			56416	8915	46538	46580	61812	61812					-0.041256095283642935
TFARFCCLH	9	Unmodified	_TFARFCCLH_					0	0	0			REV__L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|166|3|sense	REV__L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|166|3|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	549.2547607421875	2	549.254597	1096.49464	0.65185	0.00035803	0.6163	0.0003385	1.2681	0.00069653	549.2546242773428	140.06	0.85246	140.06	139.83	140.68	0					34	17	3	0	0	0	0.29717	1	16352	16352		63.306	4.5243	1	285850	+		56417	28490	46539	46581	61813	61813					-0.04974692757923549
TFARVKSPL	9	Unmodified	_TFARVKSPL_					0	0	0			REV__ENSG00000115850|ENST00000264162|LCT	REV__ENSG00000115850|ENST00000264162|LCT	MULTI-MSMS	OvCa9_classI_Rep2	2	509.803466796875	2	509.805834	1017.59712	-0.41042	-0.00020923	-3.6368	-0.0018541	-4.0473	-0.0020633	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.62352	1	13464	13464		29.15	2.3535	1	150140	+		56418	18274	46540	46582	61814	61814					0.08902039576844345
TFARVKSPL	9	Unmodified	_TFARVKSPL_					0	0	0			REV__ENSG00000115850|ENST00000264162|LCT	REV__ENSG00000115850|ENST00000264162|LCT	MULTI-MSMS	OvCa9_classI_Rep3	3	509.80340576171875	2	509.805834	1017.59712	-1.3099	-0.00066782	-2.9211	-0.0014892	-4.231	-0.002157	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.67509	1	11031	11031		23.042	0	1	99460	+		56419	18274	46540	46582	61815	61815					0.08902039576844345
TFAVFLGYIK	10	Unmodified	_TFAVFLGYIK_					0	0	0			REV__ENSG00000182070|ENST00000380367|OR52A1	REV__ENSG00000182070|ENST00000380367|OR52A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.8074951171875	2	579.831517	1157.64848	-0.53749	-0.00031165	0.59295	0.00034381	0.055462	3.2159E-05	579.8320163298318	66.554	0.12286	66.554	66.452	66.575	0					4	2	2	0	0	0	0.026734	1	6167	6167		31.53	0	1	123750	+		56420	22259	46541	46583	61816	61816					0.07596363550896967
TFAVNRSNLY	10	Unmodified	_TFAVNRSNLY_					0	0	0			REV__ENSG00000155719|ENST00000646100|OTOA	REV__ENSG00000155719|ENST00000646100|OTOA	MSMS	OvCa99_classI_Rep5	1	592.8086547851562	2	592.806562	1183.59857	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.49	1	67.49	66.99	67.99	0								0	0	0	0.14967	1	6318	6318		40.058	0.80534	1		+		56421	20436	46542	46584	61817	61817					0.014116288749619343
TFCVWATW	8	Unmodified	_TFCVWATW_					0	0	0		ENST00000479001.2_1_6:32125488-32125658:+|nuORF	ENST00000479001.2_1_6:32125488-32125658:+|nuORF	ENST00000479001.2_1_6:32125488-32125658:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.8012390136719	2	507.231113	1012.44767	0.27299	0.00013847	-3.5207	-0.0017858	-3.2477	-0.0016473	507.22902425808417	45.224	0.38586	45.224	45.068	45.454	0					11	8	2	0	0	0	0.028476	1	3102	3102		12.959	0	1	56269			56422	12501	46543	46585	61818	61818					-0.05805229037423487
TFCWAPSPTL	10	Unmodified	_TFCWAPSPTL_					0	0	0			REV__ENST00000413040.6_1_7:151074400-151074604:+|nuORF	REV__ENST00000413040.6_1_7:151074400-151074604:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.2574462890625	2	561.76806	1121.52157	3.2188	0.0018082	-0.87625	-0.00049225	2.3425	0.001316	561.7674023575865	90.35	0.23482	90.35	90.269	90.504	0					7	5	2	0	0	0	0.026871	1	9672	9672		29.15	16.943	1	219450	+		56423	25502	46544	46586	61819	61819					-0.034333056657260386
TFDDGYFALL	10	Unmodified	_TFDDGYFALL_					0	0	0			REV__tr|A0A553SU43|A0A553SU43_NIACIFour-carbonacidsugarkinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_06260PE=3SV=1	REV__tr|A0A553SU43|A0A553SU43_NIACIFour-carbonacidsugarkinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_06260PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.348876953125	2	581.276772	1160.53899	0.13847	8.0488E-05	-3.8713	-0.0022503	-3.7328	-0.0021698	581.2747098224122	161.08	0.35048	161.08	160.86	161.21	0					9	6	2	0	0	0	0.026871	1	18874	18874		29.15	1.2673	1	31020	+		56424	31036	46545	46587	61820	61820					-0.034856868590850354
TFDLFLVIH	9	Unmodified	_TFDLFLVIH_					0	0	0		ENSG00000182372|ENST00000331222|CLN8	ENSG00000182372|ENST00000331222|CLN8	ENSG00000182372|ENST00000331222|CLN8	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.7701416015625	2	552.808042	1103.60153	2.5345	0.0014011	-3.5998	-0.00199	-1.0653	-0.00058891	552.8053076936391	75.532	0.43269	75.532	75.369	75.801	0					27	10	4	0	0	0	0.027462	1	7504	7504		24.203	3.2558	1	1100800			56425	7997	46546	46588	61821	61821					0.05387503999736509
TFDLIDEIN	9	Unmodified	_TFDLIDEIN_					0	0	0			REV__tr|A0A7D6ZXN7|A0A7D6ZXN7_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13875PE=4SV=1	REV__tr|A0A7D6ZXN7|A0A7D6ZXN7_9CLOTDNA3'-5'helicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13875PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.2799682617188	2	540.266404	1078.51826	-0.6679	-0.00036085	1.7353	0.00093753	1.0674	0.00057669	540.2671591211802	53.524	0.71493	53.524	53.214	53.929	0					39	16	4	0	0	0	0.027462	1	4309	4309		29.15	6.1071	1	738710	+		56426	32340	46547	46589	61822	61822					-0.017862772387616133
TFDPHLVTV	9	Unmodified	_TFDPHLVTV_					0	0	0			REV__ENSG00000173456|ENST00000311413|RNF26	REV__ENSG00000173456|ENST00000311413|RNF26	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.7725219726562	2	514.7742	1027.53385	-0.92241	-0.00047484	-3.0572	-0.0015738	-3.9796	-0.0020486	514.7724622149109	70.371	1.3105	66.89	66.589	67.899	-3.4812					70	26	4	0	0	0	0.48324	1	5305	5305		44.117	4.0586	1	1471700	+		56427	21774	46548	46590	61823	61823					0.021180540689329064
TFDWVFKGYG	10	Unmodified	_TFDWVFKGYG_					0	0	0		ENSG00000198077|ENST00000301146|CYP2A7;ENSG00000255974|ENST00000301141|CYP2A6	ENSG00000198077|ENST00000301146|CYP2A7	ENSG00000198077|ENST00000301146|CYP2A7	MULTI-SECPEP	OvCa99_classI_Rep5	1	609.3074951171875	2	610.292756	1218.57096	2.8985	0.0017689	2.3476	0.0014327	5.2461	0.0032017	610.2936101953902	107.71	0.71725	107.71	107.44	108.16	0					32	16	3	0	0	0	0.026802	1	12163	12163		42.396	24.928	1	467750			56428	8781	46549	46591	61824	61824					-0.029582743852870408
TFDWVFKGYG	10	Unmodified	_TFDWVFKGYG_					0	0	0		ENSG00000198077|ENST00000301146|CYP2A7;ENSG00000255974|ENST00000301141|CYP2A6	ENSG00000198077|ENST00000301146|CYP2A7	ENSG00000198077|ENST00000301146|CYP2A7	MULTI-MATCH	OvCa9_classI_Rep2	2		2	610.292756	1218.57096	-0.3581	-0.00021855	3.8035	0.0023212	3.4454	0.0021027	610.2949219173796	107.63	1.3686	107.32	106.92	108.29	-0.30836	-0.10322	0.00014191	NaN	34.173	51	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45998			56429	8781	46549	46591							-0.029582743852870408
TFDWVFKGYG	10	Unmodified	_TFDWVFKGYG_					0	0	0		ENSG00000198077|ENST00000301146|CYP2A7;ENSG00000255974|ENST00000301141|CYP2A6	ENSG00000198077|ENST00000301146|CYP2A7	ENSG00000198077|ENST00000301146|CYP2A7	MULTI-MATCH	OvCa9_classI_Rep3	3		2	610.292756	1218.57096	1.5251	0.00093073	2.6504	0.0016176	4.1755	0.0025483	610.7959082270387	108.55	0.86655	107.35	107.01	107.87	-1.1978	-0.071507	-0.0012655	NaN	34.173	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50440			56430	8781	46549	46591							-0.029582743852870408
TFDWVFKGYG	10	Unmodified	_TFDWVFKGYG_					0	0	0		ENSG00000198077|ENST00000301146|CYP2A7;ENSG00000255974|ENST00000301141|CYP2A6	ENSG00000198077|ENST00000301146|CYP2A7	ENSG00000198077|ENST00000301146|CYP2A7	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	610.292756	1218.57096	-0.32009	-0.00019535	4.544	0.0027732	4.2239	0.0025778	610.2953775148947	109.04	1.2392	107.31	107.02	108.26	-1.7256	-0.11221	0.0010458	NaN	34.173	45	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57245			56431	8781	46549	46591							-0.029582743852870408
TFEDTGIGKL	10	Unmodified	_TFEDTGIGKL_					0	0	0			REV__ENST00000505805.1_1_4:79518453-79531266:+|nuORF	REV__ENST00000505805.1_1_4:79518453-79531266:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.7816162109375	2	540.782222	1079.54989	-1.5847	-0.00085695	-0.44838	-0.00024247	-2.033	-0.0010994	540.7818537870091	53.691	0.81757	50.444	50.263	51.081	-3.2474					27	15	2	0	0	0	0.66721	1	3286	3286		34.173	0	1	333810	+		56432	19571	46550	46592	61825	61825					0.013297155152031337
TFEDTGIGKL	10	Unmodified	_TFEDTGIGKL_					0	0	0			REV__ENST00000505805.1_1_4:79518453-79531266:+|nuORF	REV__ENST00000505805.1_1_4:79518453-79531266:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	540.782222	1079.54989	-1.7802	-0.00096269	-3.7963	-0.002053	-5.5765	-0.0030157	540.7797961516548	53.402	1.3356	50.588	49.739	51.075	-2.8139	0.071916	-0.0032078	NaN	34.173	36	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98924	+		56433	19571	46550	46592							0.013297155152031337
TFEDTGIGKL	10	Unmodified	_TFEDTGIGKL_					0	0	0			REV__ENST00000505805.1_1_4:79518453-79531266:+|nuORF	REV__ENST00000505805.1_1_4:79518453-79531266:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	540.782222	1079.54989	-1.5847	-0.00085695	-0.44838	-0.00024247	-2.033	-0.0010994	540.7818537870091	53.691	0.81757	50.444	50.263	51.081	-3.2474	-0.071916	0.00041325	NaN	34.173	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	333810	+		56434	19571	46550	46592							0.013297155152031337
TFENIKIKL	9	Unmodified	_TFENIKIKL_					0	0	0		ENST00000326291.10_1_13:73356367-73357596:+|nuORF	ENST00000326291.10_1_13:73356367-73357596:+|nuORF	ENST00000326291.10_1_13:73356367-73357596:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.83251953125	2	553.334424	1104.6543	0.96335	0.00053305	0.1377	7.6195E-05	1.101	0.00060925	553.3342529652656	81.445	1.4012	81.445	80.949	82.351	0					47	33	3	0	0	0	0.027441	1	8468	8468		49.442	3.4693	1	1532500			56435	10406	46551	46593	61826	61826					0.10615462062560255
TFEQEQQLEI	10	Unmodified	_TFEQEQQLEI_					0	0	0			REV__tr|A0A553SIA9|A0A553SIA9_NIACIResponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_14510PE=4SV=1	REV__tr|A0A553SIA9|A0A553SIA9_NIACIResponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_14510PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	632.3310546875	2	632.806425	1263.5983	-0.11437	-7.2372E-05	3.6275	0.0022955	3.5132	0.0022232	633.310208736747	116.97	0.315	115.61	115.51	115.82	-1.3645					6	5	2	0	0	0	0.026782	1	10924	10924		45.972	7.1661	1	6767.5	+		56436	29878	46552	46594	61827	61827					-0.022958356355502474
TFERFSLITI	10	Unmodified	_TFERFSLITI_					0	0	0			REV__ENSG00000124920|ENST00000278836|MYRF	REV__ENSG00000124920|ENST00000278836|MYRF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	408.7277526855469	3	409.564168	1225.67067	0.77092	0.00031574	0.42043	0.00017219	1.1913	0.00048793	409.8981974868895	48.241	0.35779	45.133	44.938	45.296	-3.1077					9	6	2	0	0	0	0.027147	1	2632	2632		10.587	0	1	10283	+		56437	18710	46553	46595	61828	61828					0.06686543228647679
TFESDYDDEV	10	Unmodified	_TFESDYDDEV_					0	0	0			REV__tr|A0A553SGI3|A0A553SGI3_NIACIPLP-dependentaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10925PE=3SV=1	REV__tr|A0A553SGI3|A0A553SGI3_NIACIPLP-dependentaminotransferasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10925PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	406.5799865722656	3	407.159424	1218.45644	0.62512	0.00025453	-2.4687	-0.0010051	-1.8435	-0.00075061	407.4926461192772	44.645	0.57975	44.645	44.215	44.795	0					17	10	3	0	0	0	0.027165	1	2977	2977		10.104	1.8688	1	52293	+		56438	29704	46554	46596	61829	61829					-0.1440467344859826
TFFCRPHNI	9	Unmodified	_TFFCRPHNI_					0	0	0		ENSG00000196415|ENST00000234347|PRTN3	ENSG00000196415|ENST00000234347|PRTN3	ENSG00000196415|ENST00000234347|PRTN3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.351318359375	2	567.779293	1133.54403	-0.057868	-3.2856E-05	1.3795	0.00078323	1.3216	0.00075038	567.7811617490187	124.2	0.30032	122.81	122.62	122.92	-1.3908					8	5	2	0	0	0	0.027462	1	11758	11758		23.042	3.939	1	14533			56439	8604	46555	46597	61830	61830					-0.017396614774725094
TFFHIFFMHSL	11	Unmodified	_TFFHIFFMHSL_					0	0	0			REV__ENSG00000183269|ENST00000537935|OR52E8	REV__ENSG00000183269|ENST00000537935|OR52E8	MULTI-SECPEP	OvCa99_classI_Rep5	1	476.81182861328125	3	476.237398	1425.69036	-0.090727	-4.3208E-05	2.3923	0.0011393	2.3016	0.0010961	476.2381252622047	35.727	0.23273	35.727	35.566	35.799	0					6	4	2	0	0	0	0.026033	1	1829	1829		22.562	9.0536	1	9903.4	+		56440	22352	46556	46598	61831	61831					-0.005454040322319997
TFFIYLGDL	9	Unmodified	_TFFIYLGDL_					0	0	0		ENST00000273582.9_2_3:197401100-197401214:-|nuORF	ENST00000273582.9_2_3:197401100-197401214:-|nuORF	ENST00000273582.9_2_3:197401100-197401214:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2755737304688	2	544.786776	1087.559	1.6493	0.00089849	2.4767	0.0013493	4.1259	0.0022478	544.7873180635738	127.84	0.187	127.84	127.72	127.9	0					5	3	2	0	0	0	0.027462	1	14806	14806		34.173	21.361	1	25481			56441	10009	46557	46599	61832	61832					0.018721088714983125
TFFIYLGDL	9	Unmodified	_TFFIYLGDL_					0	0	0		ENST00000273582.9_2_3:197401100-197401214:-|nuORF	ENST00000273582.9_2_3:197401100-197401214:-|nuORF	ENST00000273582.9_2_3:197401100-197401214:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	544.786776	1087.559	0.37929	0.00020663	2.1613	0.0011774	2.5406	0.0013841	545.2903011389213	129.03	0.19719	127.57	127.45	127.64	-1.4565	-0.13244	-0.00016781	NaN	39.253	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7335.7			56442	10009	46557	46599							0.018721088714983125
TFFYAFPM	8	Unmodified	_TFFYAFPM_					0	0	0			REV__ENST00000547670.5_1_12:49494396-49503620:-|nuORF	REV__ENST00000547670.5_1_12:49494396-49503620:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.7789001464844	2	512.235864	1022.45718	-0.32759	-0.0001678	0.96363	0.00049361	0.63605	0.00032581	512.2363045282387	58.953	0.48051	58.953	58.53	59.011	0					15	11	2	0	0	0	0.028476	1	5021	5021		35.201	1.0282	1	222450	+		56443	19624	46558	46600	61833	61833					-0.05315460751887713
TFFYFLLI	8	Unmodified	_TFFYFLLI_					0	0	0			REV__nc|ENSG00000188672|P18577-14|RHCE	REV__nc|ENSG00000188672|P18577-14|RHCE	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.7865600585938	2	532.296779	1062.57901	0.10643	5.6651E-05	3.1307	0.0016664	3.2371	0.0017231	532.2977219025096	70.866	0.62558	70.866	70.565	71.191	0					21	15	2	0	0	0	0.028476	1	6868	6868		18.324	4.1873	1	1047600	+		56444	22727	46559	46601	61834	61834					0.05021904602131144
TFFYSPMLFI	10	Unmodified	_TFFYSPMLFI_					0	0	0			REV__LMBR1L|p.F130_A131delinsS|1|0.06|ENSG00000139636|chr12:49104492-49104494|CAA/-|inframe_deletion	REV__LMBR1L|p.F130_A131delinsS|1|0.06|ENSG00000139636|chr12:49104492-49104494|CAA/-|inframe_deletion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	421.9166259765625	3	422.547349	1264.62022	-0.38609	-0.00016314	-0.90779	-0.00038359	-1.2939	-0.00054673	422.5468642101193	21.127	1.0298	19.788	19.595	20.625	-1.3386					28	20	2	0	0	0	0.027193	1	121	121		11.636	0	1	37887	+		56445	28622	46560	46602	61835	61835					-0.0015070242070578388
TFGIEPFKT	9	Unmodified	_TFGIEPFKT_					0	0	0		ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	ENSG00000109805|ENST00000251496|NCAPG	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.8206787109375	2	520.276575	1038.5386	0.82263	0.000428	0.46025	0.00023946	1.2829	0.00066745	520.2768614025387	138.67	0.4771	138.67	138.4	138.88	0					12	9	2	0	0	0	0.027462	1	16164	16164		49.442	15.926	1	55466			56446	2737	46561	46603	61836	61836					0.020869382117098212
TFGIVLSK	8	Unmodified	_TFGIVLSK_					0	0	0		nc|ENSG00000249961|Q8NA31-3|TERB1;nc|ENSG00000249961|Q8NA31-2|TERB1;ENSG00000249961|ENST00000433154|TERB1	nc|ENSG00000249961|Q8NA31-3|TERB1	nc|ENSG00000249961|Q8NA31-3|TERB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	432.254638671875	2	432.763104	863.511654	-0.38415	-0.00016625	-3.8526	-0.0016673	-4.2368	-0.0018335	432.76127180915955	42.147	0.30423	42.147	41.982	42.286	0					9	6	2	0	0	0	0.028476	1	2672	2672		6.3127	0	1	26333			56447	9415	46562	46604	61837	61837					0.07443874391174177
TFGQSPFMRF	10	Unmodified	_TFGQSPFMRF_					0	0	0			REV__ENSG00000114166|ENST00000263754|KAT2B	REV__ENSG00000114166|ENST00000263754|KAT2B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	405.8680725097656	3	406.530581	1216.56991	1.3591	0.00055253	-1.6412	-0.00066718	-0.28202	-0.00011465	406.8649844657715	59.067	0.59776	55.675	55.502	56.1	-3.392					17	11	2	0	0	0	0.026956	1	3914	3914		19.263	0	1	39284	+		56448	18181	46563	46605	61838	61838					-0.029708120258419513
TFGVLKRAL	9	Unmodified	_TFGVLKRAL_					0	0	0		sp|P16766|UL35_HCMVAProteinUL35OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL35PE=1SV=1;sp|F5HE12|UL35_HCMVMTegumentproteinUL35OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL35PE=3SV=1	sp|P16766|UL35_HCMVAProteinUL35OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL35PE=1SV=1	sp|P16766|UL35_HCMVAProteinUL35OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL35PE=1SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	502.81396484375	2	502.816202	1003.61785	-4.451	-0.0022381	0.22723	0.00011425	-4.2238	-0.0021238	502.8162192928447	153.83	1.4178	153.6	153.28	154.7	-0.22696					88	30	4	0	0	0	0.67509	1	15718	15718		23.042	3.6825	1	684970			56449	32865	46564	46606	61839	61839					0.11618629956512905
TFIAGPDI	8	Unmodified	_TFIAGPDI_					0	0	0			REV__tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	REV__tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	417.7171936035156	2	417.223811	832.433069	-1.3664	-0.00057008	1.5028	0.00062702	0.13646	5.6933E-05	417.22362229398203	72.467	0.53714	69.071	68.716	69.253	-3.3961					13	10	2	0	0	0	0.028476	1	5571	5571		12.959	0	1	15499	+		56450	31958	46565	46607	61840	61840					0.01015022086096451
TFIEWLLL	8	Unmodified	_TFIEWLLL_					0	0	0			REV__ENST00000517914.1_1_8:25314857-25314992:-|nuORF	REV__ENST00000517914.1_1_8:25314857-25314992:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.7547607421875	2	517.799686	1033.58482	-1.3612	-0.00070482	-1.9513	-0.0010104	-3.3125	-0.0017152	517.7974584819207	100.61	0.72507	98.347	97.825	98.55	-2.2665					14	13	2	0	0	0	0.028476	1	8956	8956		65.803	0	1	10837	+		56451	27021	46566	46608	61841	61841					0.06937003113807805
TFIHLCFQR	9	Unmodified	_TFIHLCFQR_					0	0	0			REV__ENST00000427953.5_1_1:114466911-114471053:-|nuORF	REV__ENST00000427953.5_1_1:114466911-114471053:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	582.8032836914062	2	582.802768	1163.59098	1.1315	0.00065944	-3.6047	-0.0021008	-2.4732	-0.0014414	582.8006818033648	147.53	6.6763	147.53	147.01	153.69	0					349	139	4	0	0	0	0.50149	1	17722	17722		42.396	5.9494	1	20317000	+		56452	25685	46567	46609	61842	61842					0.015731980736745754
TFIIRVLNS	9	Unmodified	_TFIIRVLNS_					0	0	0		Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|191|3|anti-sense	Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|191|3|anti-sense	Harlequin-int_dup415|chr13:22885843-22889378:+|5.118798177365826|0.2933300422967718|4.13|425.0|191|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8164672851562	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.63422	1	13925	13925		27.882	4.8398	1	166960			56453	14385	46568	46610	61843	61843					0.09498308748311501
TFILIDIDN	9	Unmodified	_TFILIDIDN_					0	0	0		tr|A0A553SJZ6|A0A553SJZ6_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_17640PE=4SV=1	tr|A0A553SJZ6|A0A553SJZ6_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_17640PE=4SV=1	tr|A0A553SJZ6|A0A553SJZ6_NIACIDiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_17640PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.3507080078125	2	532.28714	1062.55973	-1.0743	-0.00057185	1.1734	0.00062459	0.099071	5.2734E-05	532.2871983669601	34.541	0.65417	34.541	34.398	35.052	0					28	13	3	0	0	0	0.027462	1	1672	1672		44.117	0	1	72337			56454	33560	46569	46611	61844	61844					0.030949035205594555
TFILMMARP	9	Unmodified	_TFILMMARP_					0	0	0		ENST00000370112.8_1_1:101379329-101383647:+|nuORF	ENST00000370112.8_1_1:101379329-101383647:+|nuORF	ENST00000370112.8_1_1:101379329-101383647:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.8077392578125	2	540.290648	1078.56674	-1.2358	-0.00066767	0.96705	0.00052249	-0.26872	-0.00014519	540.2902512909333	104.1	0.5246	101.98	101.69	102.22	-2.1192					15	8	3	0	0	0	0.027462	1	9438	9438		35.618	4.0885	1	27104			56455	10919	46570	46612	61845	61845					0.030602215957969747
TFILRAVLRLK	11	Unmodified	_TFILRAVLRLK_					0	0	0		ENSG00000184478|ENST00000641160|OR56A3	ENSG00000184478|ENST00000641160|OR56A3	ENSG00000184478|ENST00000641160|OR56A3	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.9324951171875	3	443.962485	1328.86563	0.29989	0.00013314	-3.4622	-0.0015371	-3.1623	-0.0014039	443.96151976876007	28.816	0.14935	28.816	28.739	28.888	0					6	2	3	0	0	0	0.026302	1	970	970		8.4073	0	1	29547			56456	8162	46571	46613	61846	61846					0.21434758824284472
TFIPLLLSFV	10	Unmodified	_TFIPLLLSFV_					0	0	0		tr|A0A553SJ86|A0A553SJ86_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_16315PE=4SV=1	tr|A0A553SJ86|A0A553SJ86_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_16315PE=4SV=1	tr|A0A553SJ86|A0A553SJ86_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_16315PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.3453369140625	2	575.349543	1148.68453	-4.8722	-0.0028032	-2.1116	-0.0012149	-6.9839	-0.0040182	575.3482857575835	154.87	1.1278	154.64	154.34	155.47	-0.22696					59	30	3	0	0	0	0.7759	1	15788	15788		21.96	3.6355	1	84487			56457	33477	46572	46614	61847	61847					0.11613820727757229
TFIRAAETD	9	Unmodified	_TFIRAAETD_					0	0	0		CNOT2-C3orf19|1|fusion;ENST00000548939.1_1_12:70732225-70736007:+|nuORF;nc|ENSG00000111596|Q9NZN8-3|CNOT2;nc|ENSG00000111596|Q9NZN8-2|CNOT2;nc|ENSG00000111596|Q9NZN8-4|CNOT2;nc|ENSG00000111596|Q9NZN8-5|CNOT2;ENSG00000111596|ENST00000229195|CNOT2	CNOT2-C3orf19|1|fusion	CNOT2-C3orf19|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.2696533203125	2	512.258914	1022.50327	-0.97591	-0.00049992	2.3018	0.0011791	1.3259	0.00067919	512.2600503251041	88.963	0.5889	86.36	86.136	86.725	-2.6027					16	11	2	0	0	0	0.027441	1	7627	7627		58.782	16.386	1	82062			56458	589	46573	46615	61848	61848					-0.00707724316112035
TFKALLWI	8	Unmodified	_TFKALLWI_					0	0	0		ENST00000402544.5_1_10:65028452-65028557:-|nuORF	ENST00000402544.5_1_10:65028452-65028557:-|nuORF	ENST00000402544.5_1_10:65028452-65028557:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	496.30548095703125	2	496.302396	990.590239	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.41	1	136.88	136.38	137.38	-1.5284								0	0	0	0.30129	1	13473	13473		20.482	0	1				56459	11431	46574	46616	61849	61849					0.09456726696282658
TFKEMGRLEVR	11	Unmodified	_TFKEMGRLEVR_					0	0	0			REV__ENSG00000177103|ENST00000651296|DSCAML1	REV__ENSG00000177103|ENST00000651296|DSCAML1	MULTI-SECPEP	OvCa9_classI_Rep3	3	456.7801818847656	3	455.915095	1364.72345	0.31975	0.00014578	-0.78725	-0.00035892	-0.4675	-0.00021314	456.24859721876993	79.772	0.7065	77.432	77.053	77.759	-2.3399					21	13	2	0	0	0	0.026033	1	4349	4349		22.562	4.0305	1	18245	+		56460	21986	46575	46617	61850	61850					0.055681780197801345
TFKKKKLKF	9	Unmodified	_TFKKKKLKF_					0	0	0			REV__Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|63|2|sense	REV__Harlequin-int_dup17|chr1:46326040-46329561:-|5.077814921392451|0.3399966488246573|3.9|429.0|63|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.3306274414062	2	584.384251	1166.75395	1.8849	0.0011015	-2.0048	-0.0011716	-0.11992	-7.008E-05	584.3832387668642	95.306	0.41542	95.306	95.161	95.577	0					11	9	2	0	0	0	0.027462	1	10408	10408		44.117	19.914	1	492680	+		56461	28178	46576	46618	61851	61851					0.17724324467189945
TFKKNFEDL	9	Unmodified	_TFKKNFEDL_					0	0	0			REV__tr|A0A7D6VM15|A0A7D6VM15_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13555PE=4SV=1	REV__tr|A0A7D6VM15|A0A7D6VM15_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13555PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.2577514648438	2	571.298039	1140.58152	0.34094	0.00019478	4.3043	0.0024591	4.6453	0.0026538	571.3006439848967	161.93	0.61385	161.93	161.56	162.18	0					17	11	2	0	0	0	0.027457	1	18972	18972		26.063	0	1	57843	+		56462	31122	46577	46619	61852	61852					0.01685708269155839
TFKLLAVEVN	10	Unmodified	_TFKLLAVEVN_					0	0	0		nc|ENSG00000148600|Q96JP9-2|CDHR1;ENSG00000148600|ENST00000623527|CDHR1	nc|ENSG00000148600|Q96JP9-2|CDHR1	nc|ENSG00000148600|Q96JP9-2|CDHR1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3280639648438	2	567.331882	1132.64921	-2.6412	-0.0014984	-1.2123	-0.00068778	-3.8535	-0.0021862	567.3310908608092	141.92	3.9983	140.91	138.91	142.91	-1.0106					224	80	5	0	0	0	0.70152	1	11773	11773		30.318	1.1682	1	127690			56463	15082	46578	46620	61853	61853					0.0881915819995811
TFKQVAALGK	10	Unmodified	_TFKQVAALGK_					0	0	0			REV__nc|ENSG00000170185|Q8NB14-2|USP38	REV__nc|ENSG00000170185|Q8NB14-2|USP38	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8162231445312	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.73378	1	11532	11532		26.693	2.4902	1	178650	+		56464	21520	46579	46621	61854	61854					0.09498308748334239
TFKRILVLV	9	Unmodified	_TFKRILVLV_					0	0	0		ENSG00000033050|ENST00000287844|ABCF2;nc|ENSG00000285292|Q9UG63-2|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	ENSG00000033050|ENST00000287844|ABCF2	MULTI-MSMS	OvCa99_classI_Rep5	1	544.865234375	2	544.863152	1087.71175	1.2989	0.00070775	0.63374	0.0003453	1.9327	0.0010531	544.8632509128331	111.63	1.9097	111.63	111.24	113.15	0					90	41	3	0	0	0	0.46377	1	12678	12678		45.952	10.334	1	738120			56465	1073	46580	46622	61855	61855					0.17140349058786342
TFKSPVPVN	9	Unmodified	_TFKSPVPVN_					0	0	0		ENSG00000166845|ENST00000620105|C18orf54;nc|ENSG00000166845|Q8IYD9|LAS2	ENSG00000166845|ENST00000620105|C18orf54	ENSG00000166845|ENST00000620105|C18orf54	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.7789611816406	2	494.776742	987.538931	1.6697	0.00082614	-4.1919	-0.0020741	-2.5222	-0.0012479	494.77462039441735	77.779	0.71138	77.779	77.422	78.134	0					33	16	3	0	0	0	0.027462	1	7907	7907		32.812	2.3088	1	4209000			56466	6720	46581	46623	61856	61856					0.0446635793156247
TFKVLQPHQ	9	Unmodified	_TFKVLQPHQ_					0	0	0		ENSG00000170396|ENST00000302277|ZNF804A	ENSG00000170396|ENST00000302277|ZNF804A	ENSG00000170396|ENST00000302277|ZNF804A	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.63330078125	2	549.308741	1096.60293	-0.09696	-5.3261E-05	-3.7369	-0.0020527	-3.8339	-0.002106	549.3066076387065	32.229	0.44745	32.229	32.055	32.503	0					24	8	4	0	0	0	0.027462	1	1381	1381		37.159	1.5408	1	415210			56467	7100	46582	46624	61857	61857					0.058491380885243416
TFLALHLK	8	Unmodified	_TFLALHLK_					0	0	0			REV__chr19:58312403-58314748|380|11.72|0.0|20.16|+|1|TE_info:HERVK3-int,HERVK3-int_dup296,ERVK,LTR,donor,+,58311249,58312403|None,ZNF8-ERVK3-1|13	REV__chr19:58312403-58314748|380|11.72|0.0|20.16|+|1|TE_info:HERVK3-int,HERVK3-int_dup296,ERVK,LTR,donor,+,58311249,58312403|None,ZNF8-ERVK3-1|13	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.77154541015625	2	471.792195	941.569838	-0.43722	-0.00020628	-4.1489	-0.0019574	-4.5861	-0.0021637	471.7901013679122	42.433	0.68336	42.433	42.199	42.883	0					35	15	4	0	0	0	0.028476	1	2748	2748		38.806	17.859	1	2359300	+		56468	15986	46583	46625	61858	61858					0.0967155603646006
TFLCMVLVLLL	11	Unmodified	_TFLCMVLVLLL_					0	0	0		nc|ENSG00000124749|Q96P44-3|COL21A1;ENSG00000124749|ENST00000244728|COL21A1	nc|ENSG00000124749|Q96P44-3|COL21A1	nc|ENSG00000124749|Q96P44-3|COL21A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	632.3416137695312	2	632.874013	1263.73347	1.5174	0.00096032	0.40301	0.00025505	1.9204	0.0012154	633.3772363150495	150.3	0.29779	150.3	150.1	150.39	0					8	5	2	0	0	0	0.025496	1	17602	17602		25.574	0.44807	1	19756			56469	3676	46584	46626	61859	61859					0.1121564970083
TFLDFIQTL	9	Unmodified	_TFLDFIQTL_					0	0	0		ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-2|ABCC4	ENSG00000125257|ENST00000645237|ABCC4	ENSG00000125257|ENST00000645237|ABCC4	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.2547607421875	2	549.297507	1096.58046	0.71873	0.0003948	0.94245	0.00051769	1.6612	0.00091248	549.2976898269654	139.9	0.70544	139.9	139.51	140.22	0					22	14	3	0	0	0	0.027247	1	16352	16352		79.713	20.931	1	64599			56470	3695	46585	46627	61860	61860					0.03603493900232024
TFLDKEYEI	9	Unmodified	_TFLDKEYEI_					0	0	0		tr|A0A553SUS0|A0A553SUS0_NIACIIron-hydroxamateABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_05605PE=3SV=1	tr|A0A553SUS0|A0A553SUS0_NIACIIron-hydroxamateABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_05605PE=3SV=1	tr|A0A553SUS0|A0A553SUS0_NIACIIron-hydroxamateABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_05605PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.2904663085938	2	579.289879	1156.56521	-0.65118	-0.00037722	0.58867	0.00034101	-0.062512	-3.6213E-05	579.2900765258487	102.42	1.2593	100.22	99.937	101.2	-2.1994					72	23	5	0	0	0	0.35444	1	9240	9240		56.721	9.0637	1	370090			56471	34634	46586	46628	61861	61861					-0.0068141768761051935
TFLEDIIID	9	Unmodified	_TFLEDIIID_					0	0	0		ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	OvCa9_classI_Rep2	2	539.3012084960938	2	539.786973	1077.55939	-0.49563	-0.00026754	-1.5466	-0.00083486	-2.0423	-0.0011024	539.7855349303388	96.339	0.69438	95.311	95.013	95.707	-1.0281					28	13	3	0	0	0	0.027164	1	8676	8676		68.787	7.8149	1	40258			56472	8495	46587	46629	61862	61862					0.023714838007208527
TFLELFPT	8	Unmodified	_TFLELFPT_					0	0	0		ENSG00000180440|ENST00000315190|SERTM1	ENSG00000180440|ENST00000315190|SERTM1	ENSG00000180440|ENST00000315190|SERTM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.7662658691406	2	484.260394	966.506234	0.050338	2.4377E-05	-2.4379	-0.0011806	-2.3876	-0.0011562	484.25827808024206	32.973	0.29045	32.973	32.748	33.039	0					6	5	2	0	0	0	0.028476	1	1452	1452		20.482	12.251	1	12252			56473	7874	46588	46630	61863	61863					0.021641508087100192
TFLFFLRQIKI	11	Unmodified	_TFLFFLRQIKI_					0	0	0			REV__ENST00000397992.5_1_16:73092794-73093010:-|nuORF	REV__ENST00000397992.5_1_16:73092794-73093010:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	475.96197509765625	3	475.958741	1424.85439	1.142	0.00054357	3.1163	0.0014832	4.2583	0.0020268	475.96017295616696	107.25	2.8215	105.99	105.67	108.49	-1.267					142	54	4	0	0	0	0.72472	1	7631	7631		19.263	0.73163	1	646610	+		56474	25369	46589	46631	61864	61864					0.15895936730180438
TFLHFFAQVD	10	Unmodified	_TFLHFFAQVD_					0	0	0			REV__ENST00000307602.8_1_8:42885180-42885507:+|nuORF	REV__ENST00000307602.8_1_8:42885180-42885507:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	612.7399291992188	2	612.806031	1223.59751	1.6768	0.0010275	0.95264	0.00058379	2.6294	0.0016113	612.8067662506597	107.03	0.71352	107.03	106.85	107.56	0					30	16	3	0	0	0	0.026752	1	12089	12089		27.882	0	1	744680	+		56475	24309	46590	46632	61865	61865					-0.005345854939605488
TFLHPFKIPLI	11	Unmodified	_TFLHPFKIPLI_					0	0	0			REV__ENST00000591475.5_1_18:61064221-61089576:-|nuORF;REV__ENSG00000132612|ENST00000254950|VPS4A	REV__ENSG00000132612|ENST00000254950|VPS4A	MULTI-MSMS	OvCa9_classI_Rep4_	4	442.6031188964844	3	442.604186	1324.79073	-1.4984	-0.0006632	-3.7327	-0.0016521	-5.2311	-0.0023153	442.6024623792791	50.389	2.298	47.247	46.61	48.908	-3.1416					99	44	3	0	0	0	0.6112	1	2884	2884		43.651	3.7776	1	430660	+		56476	18449;19091	46591	46633	61866	61866					0.14132576293104648
TFLHVVLGEL	10	Unmodified	_TFLHVVLGEL_					0	0	0		tr|A0A553SUF2|A0A553SUF2_NIACIHlyC/CorCfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_06835PE=3SV=1	tr|A0A553SUF2|A0A553SUF2_NIACIHlyC/CorCfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_06835PE=3SV=1	tr|A0A553SUF2|A0A553SUF2_NIACIHlyC/CorCfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_06835PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	564.323974609375	2	564.326599	1126.63865	-1.0001	-0.00056441	-3.5482	-0.0020023	-4.5483	-0.0025667	564.3245968274675	101.36	2.2253	100.59	100.22	102.45	-0.76401					148	44	6	0	0	0	0.35465	1	9328	9328		74.255	10.048	1	4635900			56477	34603	46592	46634	61867	61867					0.08039175545536636
TFLIRFISP	9	Unmodified	_TFLIRFISP_					0	0	0			REV__ENSG00000157423|ENST00000393567|HYDIN	REV__ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.7960815429688	2	547.32386	1092.63317	-0.63642	-0.00034833	-3.2018	-0.0017524	-3.8382	-0.0021007	547.3219633175663	87.177	0.65446	84.55	84.349	85.004	-2.6269					18	12	2	0	0	0	0.027462	1	7384	7384		14.865	0	1	35346	+		56478	20520	46593	46635	61868	61868					0.0905549675369457
TFLKFGVN	8	Unmodified	_TFLKFGVN_					0	0	0		ENSG00000109851|ENST00000524983|DBX1	ENSG00000109851|ENST00000524983|DBX1	ENSG00000109851|ENST00000524983|DBX1	MULTI-SECPEP	OvCa9_classI_Rep3	3	463.2842102050781	2	463.260728	924.506903	-6.1394	-0.0028441	1.7461	0.0008089	-4.3933	-0.0020352	463.26157616649743	156.65	1.2532	155.48	155.05	156.31	-1.1707					38	24	2	0	0	0	0.028476	1	13548	13548		16.473	1.809	1	22454			56479	2739	46594	46636	61869	61869					0.04162990248426013
TFLLCKAIQ	9	Unmodified	_TFLLCKAIQ_					0	0	0		nc|ENSG00000127507|Q9UHX3-5|ADGRE2;nc|ENSG00000127507|Q9UHX3-4|ADGRE2;nc|ENSG00000127507|Q9UHX3-6|ADGRE2;nc|ENSG00000127507|Q9UHX3-3|ADGRE2;nc|ENSG00000127507|Q9UHX3-2|ADGRE2;ENSG00000127507|ENST00000315576|ADGRE2	nc|ENSG00000127507|Q9UHX3-5|ADGRE2	nc|ENSG00000127507|Q9UHX3-5|ADGRE2	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.3323364257812	2	518.79662	1035.57869	0.74784	0.00038798	3.1722	0.0016457	3.92	0.0020337	518.7981214788412	71.269	2.2467	68.762	68.333	70.58	-2.5071					73	42	2	0	0	0	0.027462	1	5844	5844		51.335	10.557	1	220900			56480	3835	46595	46637	61870	61870					0.06232161610637377
TFLLSGIP	8	Unmodified	_TFLLSGIP_					0	0	0		OR51G2|p.V152Afs*7|1|0.15|ENSG00000176893|chr11:4915209-4915209|A/-|frameshift_variant;ENSG00000176893|ENST00000641926|OR51G2	OR51G2|p.V152Afs*7|1|0.15|ENSG00000176893|chr11:4915209-4915209|A/-|frameshift_variant	OR51G2|p.V152Afs*7|1|0.15|ENSG00000176893|chr11:4915209-4915209|A/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	425.2336120605469	2	424.249829	846.485105	-0.59841	-0.00025388	-2.3166	-0.00098283	-2.9151	-0.0012367	424.24868673546456	49.985	0.78539	49.985	49.723	50.509	0					40	17	4	0	0	0	0.028476	1	3776	3776		33.516	0	1	666800			56481	7633	46596	46638	61871	61871					0.055721854998637355
TFLNWTLDN	9	Unmodified	_TFLNWTLDN_					0	0	0			REV__nc|ENSG00000292339|O95671-3|ASMTL	REV__nc|ENSG00000292339|O95671-3|ASMTL	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.317626953125	2	562.274564	1122.53457	-0.50139	-0.00028192	3.2138	0.001807	2.7124	0.0015251	562.7767858144614	65.848	0.23579	65.848	65.748	65.984	0					8	5	2	0	0	0	0.027462	1	6066	6066		52.937	10.541	1	464510	+		56482	21431	46597	46639	61872	61872					-0.021791512819845593
TFLPGLIPAE	10	Unmodified	_TFLPGLIPAE_					0	0	0		ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	ENSG00000175073|ENST00000310421|VCPIP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.3431396484375	2	529.30005	1056.58555	1.0254	0.00054275	-1.6335	-0.00086464	-0.60813	-0.00032188	529.2993385120602	143.01	0.9286	143.01	142.49	143.41	0					29	18	2	0	0	0	0.026802	1	16757	16757		42.396	16.822	1	75029			56483	7511	46598	46640	61873	61873					0.059517977628502194
TFLPPSKKK	9	Unmodified	_TFLPPSKKK_					0	0	0		ENSG00000165186|ENST00000379361|PTCHD1;nc|ENSG00000165186|Q96NR3-2|PTCHD1	ENSG00000165186|ENST00000379361|PTCHD1	ENSG00000165186|ENST00000379361|PTCHD1	MULTI-MSMS	OvCa9_classI_Rep2	2	523.322998046875	2	523.32386	1044.63317	0.90245	0.00047227	-1.0468	-0.00054782	-0.14435	-7.5541E-05	523.3231203427081	131.19	1.3271	130.96	130.65	131.98	-0.22696					57	26	3	0	0	0	0.62352	1	12954	12954		29.15	2.4566	1	194020			56484	6533	46599	46641	61874	61874					0.1126349675369056
TFLPRSVRVF	10	Unmodified	_TFLPRSVRVF_					0	0	0			REV__ENST00000335281.8_1_14:52434779-52434878:+|nuORF	REV__ENST00000335281.8_1_14:52434779-52434878:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3557739257812	2	611.358765	1220.70298	-3.1571	-0.0019301	-1.2176	-0.00074436	-4.3747	-0.0026745	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.73378	1	12917	12917		26.693	4.1133	1	666990	+		56485	24578	46600	46642	61875	61875					0.10145375422325742
TFLRAVTKLG	10	Unmodified	_TFLRAVTKLG_					0	0	0		ENST00000526352.5_1_11:6621466-6622302:-|nuORF;ENSG00000132275|ENST00000254605|RRP8	ENST00000526352.5_1_11:6621466-6622302:-|nuORF;ENSG00000132275|ENST00000254605|RRP8	ENSG00000132275|ENST00000254605|RRP8	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.3369140625	2	553.340041	1104.66553	-4.5455	-0.0025152	0.49685	0.00027493	-4.0487	-0.0022403	553.340345188633	155.45	1.0287	153.96	153.73	154.76	-1.4911					55	29	3	0	0	0	0.64697	1	15405	15405		36.447	2.2742	1	130600			56486	13214;4121	46601	46643	61876	61876					0.11738284156695045
TFLRLLSVSA	10	Unmodified	_TFLRLLSVSA_					0	0	0		nc|ENSG00000204248|P13942-8|COL11A2;nc|ENSG00000204248|P13942-6|COL11A2;nc|ENSG00000204248|P13942-7|COL11A2;nc|ENSG00000204248|P13942-4|COL11A2;nc|ENSG00000204248|P13942-5|COL11A2;nc|ENSG00000204248|P13942-2|COL11A2;nc|ENSG00000204248|P13942-3|COL11A2;nc|ENSG00000204248|P13942|COL11A2;ENSG00000204248|ENST00000341947|COL11A2;ENST00000477772.1_1_6:33131457-33145620:-|nuORF	nc|ENSG00000204248|P13942-8|COL11A2	nc|ENSG00000204248|P13942-8|COL11A2	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8294677734375	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.67931	1	14295	14295		32.812	1.1781	1	245610			56487	8960	46602	46644	61877	61877					0.10094577919812764
TFLRLLSVSA	10	Unmodified	_TFLRLLSVSA_					0	0	0		nc|ENSG00000204248|P13942-8|COL11A2;nc|ENSG00000204248|P13942-6|COL11A2;nc|ENSG00000204248|P13942-7|COL11A2;nc|ENSG00000204248|P13942-4|COL11A2;nc|ENSG00000204248|P13942-5|COL11A2;nc|ENSG00000204248|P13942-2|COL11A2;nc|ENSG00000204248|P13942-3|COL11A2;nc|ENSG00000204248|P13942|COL11A2;ENSG00000204248|ENST00000341947|COL11A2;ENST00000477772.1_1_6:33131457-33145620:-|nuORF	nc|ENSG00000204248|P13942-8|COL11A2	nc|ENSG00000204248|P13942-8|COL11A2	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8302001953125	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.5675	4	11875	11736;11875;11928;11963		45.972	8.8131	1	308210			56488	8960	46602	46644	61878;61879;61880;61881	61879					0.10094577919812764
TFLRLLSVSA	10	Unmodified	_TFLRLLSVSA_					0	0	0		nc|ENSG00000204248|P13942-8|COL11A2;nc|ENSG00000204248|P13942-6|COL11A2;nc|ENSG00000204248|P13942-7|COL11A2;nc|ENSG00000204248|P13942-4|COL11A2;nc|ENSG00000204248|P13942-5|COL11A2;nc|ENSG00000204248|P13942-2|COL11A2;nc|ENSG00000204248|P13942-3|COL11A2;nc|ENSG00000204248|P13942|COL11A2;ENSG00000204248|ENST00000341947|COL11A2;ENST00000477772.1_1_6:33131457-33145620:-|nuORF	nc|ENSG00000204248|P13942-8|COL11A2	nc|ENSG00000204248|P13942-8|COL11A2	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8305053710938	2	553.832049	1105.64954	0.13277	7.3535E-05	-3.4573	-0.0019148	-3.3245	-0.0018412	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.6104	2	14098	14098;14132		40.778	6.6056	1	400120			56489	8960	46602	46644	61882;61883	61882					0.10094577919812764
TFLSLLVRN	9	Unmodified	_TFLSLLVRN_					0	0	0			REV__ENSG00000081248|ENST00000362061|CACNA1S	REV__ENSG00000081248|ENST00000362061|CACNA1S	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8187255859375	2	531.818941	1061.62333	0.089047	4.7357E-05	-3.7428	-0.0019905	-3.6538	-0.0019431	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.63422	1	13541	13541		27.882	2.4321	1	263230	+		56490	17069	46603	46645	61884	61884					0.09498308748356976
TFLSRILTGL	10	Unmodified	_TFLSRILTGL_					0	0	0		NSDHL|p.N287T|1|0.08|ENSG00000147383|chrX:152868854-152868854|A/C|missense_variant;ENSG00000147383|ENST00000370274|NSDHL	NSDHL|p.N287T|1|0.08|ENSG00000147383|chrX:152868854-152868854|A/C|missense_variant	NSDHL|p.N287T|1|0.08|ENSG00000147383|chrX:152868854-152868854|A/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	560.802734375	2	560.839874	1119.66519	1.0472	0.00058731	-1.6054	-0.00090039	-0.55825	-0.00031309	560.8389751591092	112.55	0.49258	112.42	112.23	112.72	-0.12174					12	9	2	0	0	0	0.026782	1	10639	10639		37.812	4.9991	1	11104			56491	5351	46604	46646	61885	61885					0.11014864436833705
TFLSVVLPR	9	Unmodified	_TFLSVVLPR_					0	0	0		ENSG00000100425|ENST00000404760|BRD1	ENSG00000100425|ENST00000404760|BRD1	ENSG00000100425|ENST00000404760|BRD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.31494140625	2	516.316035	1030.61752	-2.0068	-0.0010361	1.8109	0.000935	-0.19587	-0.00010113	516.3167095482956	126.77	1.0923	125.35	124.96	126.05	-1.4214					31	21	2	0	0	0	0.50149	1	12086	12086		42.396	5.237	1	18798			56492	2066	46605	46647	61886	61886					0.10343210236646883
TFLTLLVPT	9	Unmodified	_TFLTLLVPT_					0	0	0			REV__ENST00000397786.6_1_17:60129973-60140505:-|nuORF	REV__ENST00000397786.6_1_17:60129973-60140505:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.76495361328125	2	502.804968	1003.59538	-1.8292	-0.00091973	-2.6846	-0.0013498	-4.5138	-0.0022695	502.8035265320299	50.492	0.57051	47.35	47.132	47.702	-3.1416					17	10	2	0	0	0	0.027462	1	2915	2915		21.96	0	1	21820	+		56493	25360	46606	46648	61887	61887					0.09372985768243325
TFLTLLVPT	9	Unmodified	_TFLTLLVPT_					0	0	0			REV__ENST00000397786.6_1_17:60129973-60140505:-|nuORF	REV__ENST00000397786.6_1_17:60129973-60140505:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	502.804968	1003.59538	-1.6473	-0.00082826	-2.9852	-0.001501	-4.6325	-0.0023293	502.8034910179351	50.15	0.44818	47.356	47.132	47.581	-2.794	0.0027631	-0.00022332	NaN	21.96	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11613	+		56494	25360	46606	46648							0.09372985768243325
TFLVFGGIFL	10	Unmodified	_TFLVFGGIFL_					0	0	0		nc|ENSG00000170190|O15375-2|SLC16A5;ENSG00000170190|ENST00000329783|SLC16A5;SLC16A5|p.T222Pfs*82|1|0.07|ENSG00000170190|chr17:75100325-75100326|-/CCCA|frameshift_variant	nc|ENSG00000170190|O15375-2|SLC16A5	nc|ENSG00000170190|O15375-2|SLC16A5	MULTI-SECPEP	OvCa9_classI_Rep2	2	558.2997436523438	2	557.320786	1112.62702	0.6773	0.00037747	-4.1955	-0.0023382	-3.5182	-0.0019608	557.8201774790701	110.07	0.98971	109.89	109.46	110.45	-0.17237					29	19	2	0	0	0	0.026915	1	10308	10308		35.618	11.099	1	58092			56495	7081	46607	46649	61888	61888					0.0752097852218867
TFMNLDPTQF	10	Unmodified	_TFMNLDPTQF_					0	0	0			REV__ENSG00000165156|ENST00000395571|ZHX1	REV__ENSG00000165156|ENST00000395571|ZHX1	MULTI-MSMS	OvCa9_classI_Rep4_	4	607.2841796875	2	607.281531	1212.54851	-0.52897	-0.00032123	3.9717	0.0024119	3.4427	0.0020907	607.283766315934	43.423	1.5891	40.415	39.906	41.495	-3.0074					93	30	4	0	0	0	0.65849	1	2080	2080		35.152	8.4591	1	274940	+		56496	21062	46608	46650	61889	61889					-0.049262418452372
TFMQLRLI	8	Unmodified	_TFMQLRLI_					0	0	0		ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	ENSG00000175216|ENST00000529230|CKAP5	ENSG00000175216|ENST00000529230|CKAP5	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.3092041015625	2	511.296788	1020.57902	2.2398	0.0011452	-2.942	-0.0015042	-0.70211	-0.00035899	511.29464607281324	110.64	0.62183	110.64	110.45	111.07	0					23	13	3	0	0	0	0.028476	1	12595	12595		40.573	0	1	119540			56497	7525	46609	46651	61890	61890					0.0695558133047598
TFMRRIPIT	9	Unmodified	_TFMRRIPIT_					0	0	0		tr|A0A7D6ZYS4|A0A7D6ZYS4_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_17565PE=4SV=1	tr|A0A7D6ZYS4|A0A7D6ZYS4_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_17565PE=4SV=1	tr|A0A7D6ZYS4|A0A7D6ZYS4_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_17565PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.2800903320312	2	567.826243	1133.63793	2.4297	0.0013797	4.3137	0.0024494	6.7434	0.0038291	567.8294754178304	108.34	0.29871	108.34	108.07	108.37	0					8	6	2	0	0	0	0.027462	1	12226	12226		19.997	0	1	204470			56498	35929	46610	46652	61891	61891					0.07646057624810965
TFNIYKANN	9	Unmodified	_TFNIYKANN_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;STAB1|p.G1393Afs*11|1|0.46|ENSG00000010327|chr3:52516388-52516389|-/C|frameshift_variant;nc|ENSG00000010327|Q9NY15-2|STAB1;ENST00000481607.1_1_3:52529402-52542549:+|nuORF	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-SECPEP	OvCa9_classI_Rep2	2	542.2905883789062	2	542.774731	1083.53491	-1.0537	-0.00057192	0.82142	0.00044585	-0.23227	-0.00012607	542.7742429391539	74.865	0.88318	72.894	72.429	73.312	-1.9711					20	16	2	0	0	0	0.027425	1	6180	6180		79.713	26.776	1	14855			56499	945	46611	46653	61892	61892					-0.0035173156215932977
TFNIYKANN	9	Unmodified	_TFNIYKANN_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;STAB1|p.G1393Afs*11|1|0.46|ENSG00000010327|chr3:52516388-52516389|-/C|frameshift_variant;nc|ENSG00000010327|Q9NY15-2|STAB1;ENST00000481607.1_1_3:52529402-52542549:+|nuORF	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-SECPEP	OvCa9_classI_Rep3	3	541.8201293945312	2	542.774731	1083.53491	-0.37727	-0.00020477	-0.5921	-0.00032138	-0.96938	-0.00052615	542.7744245914887	75.713	0.61052	73.302	73.02	73.631	-2.4106					20	11	2	0	0	0	0.027433	1	3822	3822		64.207	5.4253	1	33898			56500	945	46611	46653	61893	61893					-0.0035173156215932977
TFNIYKANN	9	Unmodified	_TFNIYKANN_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;STAB1|p.G1393Afs*11|1|0.46|ENSG00000010327|chr3:52516388-52516389|-/C|frameshift_variant;nc|ENSG00000010327|Q9NY15-2|STAB1;ENST00000481607.1_1_3:52529402-52542549:+|nuORF	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	542.774731	1083.53491	-0.53134	-0.0002884	-1.0468	-0.00056819	-1.5782	-0.00085659	542.7742999743807	75.807	0.57905	72.868	72.643	73.222	-2.9389	-0.013277	-0.00077018	NaN	79.713	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45666			56501	945	46611	46653							-0.0035173156215932977
TFNLPYPLI	9	Unmodified	_TFNLPYPLI_					0	0	0		ENSG00000116711|ENST00000367466|PLA2G4A	ENSG00000116711|ENST00000367466|PLA2G4A	ENSG00000116711|ENST00000367466|PLA2G4A	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.2730712890625	2	539.302593	1076.59063	1.3273	0.00071583	-1.6051	-0.00086564	-0.27779	-0.00014981	539.3014777988906	98.304	0.86004	98.304	97.823	98.683	0					51	19	4	0	0	0	0.027456	1	10765	10765		23.042	0	1	6262200			56502	3200	46612	46654	61894	61894					0.0554010162547911
TFPAPESRGGL	11	Unmodified	_TFPAPESRGGL_					0	0	0		nc|ENSG00000126259|Q6UWL6-3|KIRREL2;nc|ENSG00000126259|Q6UWL6-2|KIRREL2;ENSG00000126259|ENST00000360202|KIRREL2	nc|ENSG00000126259|Q6UWL6-3|KIRREL2	nc|ENSG00000126259|Q6UWL6-3|KIRREL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	566.8162231445312	2	566.293288	1130.57202	1.7752	0.0010053	-0.91635	-0.00051893	0.8588	0.00048633	566.2940796873412	110.13	0.47357	108.53	108.28	108.75	-1.6011					9	8	2	0	0	0	0.025496	1	10136	10136		32.812	17.171	1	6263.4			56503	3777	46613	46655	61895	61895					0.011959399836314333
TFPEADILL	9	Unmodified	_TFPEADILL_					0	0	0		nc|ENSG00000177374|Q14526|HIC1	nc|ENSG00000177374|Q14526|HIC1	nc|ENSG00000177374|Q14526|HIC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.78717041015625	2	509.776408	1017.53826	2.8843	0.0014704	-3.6562	-0.0018639	-0.77192	-0.0003935	509.7747089909813	134.5	1.139	132.98	132.69	133.82	-1.5257					36	22	2	0	0	0	0.55588	1	13011	13011		37.159	0.71236	1	30974			56504	15192	46614	46656	61896	61896					0.030195184918625273
TFPEADILL	9	Unmodified	_TFPEADILL_					0	0	0		nc|ENSG00000177374|Q14526|HIC1	nc|ENSG00000177374|Q14526|HIC1	nc|ENSG00000177374|Q14526|HIC1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	509.776408	1017.53826	0.076532	3.9014E-05	-0.54182	-0.00027621	-0.46529	-0.00023719	509.77605476188376	133.48	0.74046	133.25	133.02	133.76	-0.22696	0.17321	0.0005987	NaN	37.159	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19287			56505	15192	46614	46656							0.030195184918625273
TFPEADILL	9	Unmodified	_TFPEADILL_					0	0	0		nc|ENSG00000177374|Q14526|HIC1	nc|ENSG00000177374|Q14526|HIC1	nc|ENSG00000177374|Q14526|HIC1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	509.776408	1017.53826	-0.73341	-0.00037388	0.35316	0.00018003	-0.38025	-0.00019384	509.7765475788327	134.13	1.037	133.01	132.81	133.85	-1.1226	-0.07028	0.0015112	NaN	37.159	27	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26608			56506	15192	46614	46656							0.030195184918625273
TFPFSLQYI	9	Unmodified	_TFPFSLQYI_					0	0	0		ENSG00000171150|ENST00000394861|SOCS5	ENSG00000171150|ENST00000394861|SOCS5	ENSG00000171150|ENST00000394861|SOCS5	MULTI-MSMS	OvCa9_classI_Rep3	3	558.2973022460938	2	558.292225	1114.5699	-0.16263	-9.0798E-05	2.9199	0.0016302	2.7573	0.0015394	558.293692475215	107.55	1.297	106.28	106	107.3	-1.267					47	24	3	0	0	0	0.40667	1	7646	7646		51.335	7.2187	1	78997			56507	7176	46615	46657	61897	61897					0.01719511245778449
TFPLAPFPF	9	Unmodified	_TFPLAPFPF_					0	0	0			REV__nc|ENSG00000164920|Q8N2R0-2|OSR2	REV__nc|ENSG00000164920|Q8N2R0-2|OSR2	MULTI-MSMS	OvCa9_classI_Rep2	2	518.7800903320312	2	518.778754	1035.54295	1.0108	0.00052437	1.7398	0.00090258	2.7506	0.0014269	518.7794953787475	41.419	1.2817	38.709	38.438	39.72	-2.7097					65	25	4	0	0	0	0.58665	1	2191	2191		33.516	0.70317	1	331240	+		56508	21037	46616	46658	61898	61898					0.0266044742527356
TFPQAPLPF	9	Unmodified	_TFPQAPLPF_					0	0	0		ENST00000596070.1_1_19:6361585-6362062:+|nuORF	ENST00000596070.1_1_19:6361585-6362062:+|nuORF	ENST00000596070.1_1_19:6361585-6362062:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.7472839355469	2	509.273835	1016.53312	1.6981	0.00086481	-2.3209	-0.001182	-0.62281	-0.00031718	509.27217092417783	93.174	0.54152	93.174	92.926	93.468	0					28	12	4	0	0	0	0.027462	1	10092	10092		55.504	9.532	1	306230			56509	14183	46617	46659	61899	61899					0.025512594198858096
TFPQFEEPN	9	Unmodified	_TFPQFEEPN_					0	0	0			REV__ENSG00000164309|ENST00000446378|CMYA5	REV__ENSG00000164309|ENST00000446378|CMYA5	MULTI-SECPEP	OvCa9_classI_Rep2	2	553.8383178710938	2	554.750921	1107.48729	-0.29988	-0.00016636	3.0335	0.0016829	2.7337	0.0015165	554.7541723496312	102.77	0.29564	102.08	101.89	102.18	-0.68459					9	5	2	0	0	0	0.027462	1	9474	9474		19.997	4.355	1	5873.1	+		56510	20974	46618	46660	61900	61900					-0.06215430552992984
TFPSCWPL	8	Unmodified	_TFPSCWPL_					0	0	0			REV__ENST00000517838.5_1_8:128951838-129001428:+|nuORF	REV__ENST00000517838.5_1_8:128951838-129001428:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.3131103515625	2	475.725664	949.436775	0.019362	9.2111E-06	-3.4825	-0.0016567	-3.4631	-0.0016475	475.72396202923807	104.32	0.4725	102.2	102.06	102.53	-2.1192					14	8	2	0	0	0	0.028476	1	9472	9472		26.796	14.589	1	8336.1	+		56511	27019	46619	46661	61901	61901					-0.03996631411712315
TFPSVYTI	8	Unmodified	_TFPSVYTI_					0	0	0		nc|ENSG00000051825|Q99550-2|MPHOSPH9;ENSG00000051825|ENST00000606320|MPHOSPH9	nc|ENSG00000051825|Q99550-2|MPHOSPH9	nc|ENSG00000051825|Q99550-2|MPHOSPH9	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.2215576171875	2	464.244744	926.474934	-0.76879	-0.00035691	-3.5123	-0.0016306	-4.2811	-0.0019875	464.2430132074209	50.127	0.52113	50.127	49.899	50.421	0					20	11	3	0	0	0	0.028476	1	3806	3806		18.324	0	1	431950			56512	1191	46620	46662	61902	61902					0.008755777746159765
TFPTRPKRNTK	11	Unmodified	_TFPTRPKRNTK_					0	0	0			REV__MSX2|p.I188Sfs*21|1|0.22|ENSG00000120149|chr5:174729338-174729338|A/-|frameshift_variant	REV__MSX2|p.I188Sfs*21|1|0.22|ENSG00000120149|chr5:174729338-174729338|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	449.2640380859375	3	449.261482	1344.76262	4.3972	0.0019755	0.76285	0.00034272	5.16	0.0023182	449.26177507793597	28.49	1.1888	25.781	25.592	26.781	-2.7097					32	25	2	0	0	0	0.70315	1	593	593		28.577	2.5133	1	49638	+		56513	18486	46621	46663	61903	61903					0.10402646365696455
TFQDLLNR	8	Unmodified	_TFQDLLNR_					0	0	0		ENSG00000181523|ENST00000326317|SGSH	ENSG00000181523|ENST00000326317|SGSH	ENSG00000181523|ENST00000326317|SGSH	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.7502746582031	2	503.769448	1005.52434	-0.53227	-0.00026814	-0.60504	-0.0003048	-1.1373	-0.00057294	503.7688759561226	49.241	0.64812	49.241	49.031	49.679	0					29	14	3	0	0	0	0.028476	1	3691	3691		29.15	7.1897	1	827830			56514	7935	46622	46664	61904	61904					0.021802857834245515
TFQGLWFCDL	10	Unmodified	_TFQGLWFCDL_					0	0	0		ENST00000435711.5_2_2:178080364-178080542:+|nuORF	ENST00000435711.5_2_2:178080364-178080542:+|nuORF	ENST00000435711.5_2_2:178080364-178080542:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	409.5511779785156	3	410.526837	1228.55868	2.0872	0.00085685	-0.50892	-0.00020892	1.5783	0.00064792	410.5267962217726	83.37	0.38346	83.37	83.161	83.545	0					13	8	2	0	0	0	0.026849	1	8687	8687		9.2118	0	1	147070			56515	11867	46623	46665	61905	61905					-0.04645634119992792
TFQKLIKQY	9	Unmodified	_TFQKLIKQY_					0	0	0		tr|A0A7D6VVA3|A0A7D6VVA3_9CLOTSite-specificintegraseOS=ClostridiumintestinaleOX=36845GN=HZF06_10020PE=3SV=1	tr|A0A7D6VVA3|A0A7D6VVA3_9CLOTSite-specificintegraseOS=ClostridiumintestinaleOX=36845GN=HZF06_10020PE=3SV=1	tr|A0A7D6VVA3|A0A7D6VVA3_9CLOTSite-specificintegraseOS=ClostridiumintestinaleOX=36845GN=HZF06_10020PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	585.3389892578125	2	584.839874	1167.66519	-2.4172	-0.0014137	0.97248	0.00056874	-1.4447	-0.00084492	584.8409888116595	85.165	1.0873	82.945	82.598	83.686	-2.2204					76	21	5	0	0	0	0.28934	1	5036	5036		64.207	19.83	1	2182000			56516	35216	46624	46666	61906	61906					0.08806864436837714
TFRAAAIDQL	10	Unmodified	_TFRAAAIDQL_					0	0	0		tr|A0A7D7A6J7|A0A7D7A6J7_9CLOTSignalrecognitionparticlereceptorFtsYOS=ClostridiumintestinaleOX=36845GN=ftsYPE=3SV=1	tr|A0A7D7A6J7|A0A7D7A6J7_9CLOTSignalrecognitionparticlereceptorFtsYOS=ClostridiumintestinaleOX=36845GN=ftsYPE=3SV=1	tr|A0A7D7A6J7|A0A7D7A6J7_9CLOTSignalrecognitionparticlereceptorFtsYOS=ClostridiumintestinaleOX=36845GN=ftsYPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.3051147460938	2	553.303655	1104.59276	0.29444	0.00016292	-0.35621	-0.00019709	-0.061764	-3.4174E-05	553.3032566426804	59.389	1.3789	55.997	55.705	57.084	-3.392					87	27	6	0	0	0	0.49595	1	3962	3962		54.722	1.7857	1	729020			56517	36194	46625	46667	61907	61907					0.04464530363270569
TFRAKAEEI	9	Unmodified	_TFRAKAEEI_					0	0	0		tr|A0A553SMH5|A0A553SMH5_NIACIExtracellularsolute-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_22540PE=4SV=1	tr|A0A553SMH5|A0A553SMH5_NIACIExtracellularsolute-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_22540PE=4SV=1	tr|A0A553SMH5|A0A553SMH5_NIACIExtracellularsolute-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_22540PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	532.7910766601562	2	532.790381	1063.56621	1.7636	0.00093962	0.16901	9.0048E-05	1.9326	0.0010297	532.7904232540517	83.773	1.5875	83.773	83.335	84.923	0					99	37	5	0	0	0	0.14855	1	8705	8705		85.161	2.9203	1	16299000			56518	33834	46626	46668	61908	61908					0.036968414719467546
TFREMYKDYGE	11	Unmodified	_TFREMYKDYGE_					0	0	0			REV__ENST00000569830.1_1_15:42836283-42839734:-|nuORF	REV__ENST00000569830.1_1_15:42836283-42839734:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	479.7884216308594	3	480.215098	1437.62347	-0.22726	-0.00010913	-2.1212	-0.0010186	-2.3484	-0.0011278	480.214086945635	78.071	1.1956	75.719	75.402	76.597	-2.3527					55	23	4	0	0	0	0.026204	1	4152	4152		16.53	0	1	100010	+		56519	22209	46627	46669	61909	61909					-0.0778410410464403
TFRFRKYREHH	11	Unmodified	_TFRFRKYREHH_					0	0	0		L1PA3_dup1152|chr2:117623254-117629278:+|1.1606400945596698|0.0841542146032081|3.79|394.0|58|2|sense;L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|28|2|sense	L1PA3_dup1152|chr2:117623254-117629278:+|1.1606400945596698|0.0841542146032081|3.79|394.0|58|2|sense	L1PA3_dup1152|chr2:117623254-117629278:+|1.1606400945596698|0.0841542146032081|3.79|394.0|58|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.3163452148438	3	526.279647	1575.81711	-0.70274	-0.00036984	-1.1888	-0.00062562	-1.8915	-0.00099546	526.2776983024427	29.362	0.29945	29.362	29.186	29.486	0					8	5	2	0	0	0	0.026472	1	1055	1055		8.4073	0	1	17102			56520	14534	46628	46670	61910	61910					0.052236582371051554
TFRKTLPLY	9	Unmodified	_TFRKTLPLY_					0	0	0		ENST00000569406.5_1_15:74914310-74914640:+|nuORF	ENST00000569406.5_1_15:74914310-74914640:+|nuORF	ENST00000569406.5_1_15:74914310-74914640:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	569.8330688476562	2	569.834591	1137.65463	-0.84571	-0.00048192	-0.21981	-0.00012526	-1.0655	-0.00060717	569.8345191856214	98.031	6.1334	97.138	96.776	102.91	-0.89305					325	123	5	0	0	0	0.18193	1	8973	8973		79.451	2.6044	1	9613600			56521	13884	46629	46671	61911	61911					0.09130881782425604
TFRLANLL	8	Unmodified	_TFRLANLL_					0	0	0			REV__ENSG00000197872|ENST00000381323|CYRIA	REV__ENSG00000197872|ENST00000381323|CYRIA	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.2890930175781	2	474.287277	946.560001	2.9498	0.001399	4.2892	0.0020343	7.239	0.0034334	474.28922077273074	129.53	5.9099	128.07	125.62	131.53	-1.4565					195	118	2	0	0	0	0.73288	1	12528	12528		35.201	1.6851	1	37993	+		56522	22959	46630	46672	61912	61912					0.08458368031085683
TFRQRFRQFRY	11	Unmodified	_TFRQRFRQFRY_					0	0	0		ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	MULTI-SECPEP	OvCa9_classI_Rep3	3	534.80029296875	3	535.623414	1603.84841	1.5709	0.00084142	0.72769	0.00038977	2.2986	0.0012312	535.9580606524202	69.278	0.49948	66.463	66.312	66.811	-2.8144					14	9	2	0	0	0	0.026482	1	3061	3061		2.534	0	1	18914			56523	7186	46631	46673	61913	61913					0.07064231271215249
TFRSLCLN	8	Unmodified	_TFRSLCLN_					0	0	0		FBXO9|p.Q170Rfs*27|1|0.39|ENSG00000112146|chr6:53081038-53081038|C/-|frameshift_variant	FBXO9|p.Q170Rfs*27|1|0.39|ENSG00000112146|chr6:53081038-53081038|C/-|frameshift_variant	FBXO9|p.Q170Rfs*27|1|0.39|ENSG00000112146|chr6:53081038-53081038|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	476.2933654785156	2	477.247295	952.480036	0.92652	0.00044218	0.5163	0.0002464	1.4428	0.00068858	477.24736856021303	107.69	0.31825	106.42	106.2	106.52	-1.267					7	5	2	0	0	0	0.028476	1	7644	7644		16.473	0	1	12397			56524	14328	46632	46674	61914	61914					0.0018955836557097427
TFSFQNEIRIN	11	Unmodified	_TFSFQNEIRIN_					0	0	0			REV__tr|A0A7D6VRE9|A0A7D6VRE9_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19170PE=4SV=1	REV__tr|A0A7D6VRE9|A0A7D6VRE9_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19170PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	457.2835388183594	3	456.901731	1367.68336	0.27511	0.0001257	-3.9385	-0.0017995	-3.6634	-0.0016738	457.2342914213899	59.467	0.19651	56.075	56.002	56.199	-3.392					5	3	2	0	0	0	0.025819	1	3979	3979		25.892	0	1	11980	+		56525	31410	46633	46675	61915	61915					0.014229546208980537
TFSKMVLPNKI	11	Unmodified	_TFSKMVLPNKI_					0	0	0			REV__tr|A0A7D6VQZ1|A0A7D6VQZ1_9CLOTRNApolymerasesigmafactorSigIOS=ClostridiumintestinaleOX=36845GN=sigIPE=3SV=1	REV__tr|A0A7D6VQZ1|A0A7D6VQZ1_9CLOTRNApolymerasesigmafactorSigIOS=ClostridiumintestinaleOX=36845GN=sigIPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	639.362060546875	2	639.367941	1276.72133	-4.8017	-0.0030701	-2.7212	-0.0017399	-7.5229	-0.0048099	639.3660260364965	154.07	1.1512	153.84	153.46	154.62	-0.22696					54	23	3	0	0	0	0.72511	1	15696	15696		14.137	0	1	99157	+		56526	31373	46634	46676	61916	61916					0.09403749282000717
TFSRIPGKI	9	Unmodified	_TFSRIPGKI_					0	0	0			REV__nc|ENSG00000138759|Q86XX4|FRAS1	REV__nc|ENSG00000138759|Q86XX4|FRAS1	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8034973144531	2	509.805834	1017.59712	-0.41042	-0.00020923	-3.6368	-0.0018541	-4.0473	-0.0020633	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.64427	1	13457	13457		26.693	4.733	1	150140	+		56527	19568	46635	46677	61917	61917					0.08902039576844345
TFSRISALVI	10	Unmodified	_TFSRISALVI_					0	0	0		ENSG00000198346|ENST00000396403|ZNF813	ENSG00000198346|ENST00000396403|ZNF813	ENSG00000198346|ENST00000396403|ZNF813	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8305053710938	2	553.832049	1105.64954	0.13277	7.3535E-05	-3.4573	-0.0019148	-3.3245	-0.0018412	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.73378	1	14156	14156		26.693	1.1189	1	400120			56528	8808	46636	46678	61918	61918					0.10094577919790026
TFSTHLPL	8	Unmodified	_TFSTHLPL_					0	0	0		ENST00000606259.5_1_3:50403168-50405246:+|nuORF;ENST00000607121.5_1_3:50403168-50403339:+|nuORF;ENST00000606665.5_1_3:50403168-50405431:+|nuORF	ENST00000606259.5_1_3:50403168-50405246:+|nuORF	ENST00000606259.5_1_3:50403168-50405246:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	457.282470703125	2	458.25036	914.486168	0.20126	9.2226E-05	-4.2294	-0.0019381	-4.0282	-0.0018459	458.2482141534557	58.379	1.423	55.599	55.134	56.557	-2.7801					50	27	3	0	0	0	0.028476	1	4246	4246		28.254	0	1	107170			56529	14273	46637	46679	61919	61919					0.025503998687554486
TFSWLSSVVLN	11	Unmodified	_TFSWLSSVVLN_					0	0	0			REV__AOC2|p.F707*|1|0.13|ENSG00000131480|chr17:42850196-42850197|TT/-|frameshift_variant	REV__AOC2|p.F707*|1|0.13|ENSG00000131480|chr17:42850196-42850197|TT/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	627.2922973632812	2	626.832246	1251.64994	2.8045	0.0017579	-4.0535	-0.0025409	-1.2491	-0.00078296	627.3315958557193	116.11	0.22839	116.11	115.96	116.19	0					6	4	2	0	0	0	0.025265	1	13285	13285		35.152	0	1	67428	+		56530	15643	46638	46680	61920	61920					0.034179528490312805
TFTFSHATF	9	Unmodified	_TFTFSHATF_					0	0	0		ENSG00000204713|ENST00000377199|TRIM27	ENSG00000204713|ENST00000377199|TRIM27	ENSG00000204713|ENST00000377199|TRIM27	MULTI-MSMS	OvCa99_classI_Rep5	1	529.7520141601562	2	529.750724	1057.4869	2.259	0.0011967	0.50292	0.00026642	2.7619	0.0014631	529.7508249770774	98.719	1.4871	98.719	98.165	99.652	0					101	35	4	0	0	0	0.079296	2	10870	10870;10901		102.77	36.344	1	10333000			56531	9026	46639	46681	61921;61922	61921					-0.03954805482203483
TFTKWVNKHLI	11	Unmodified	_TFTKWVNKHLI_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	OvCa9_classI_Rep2	2	462.9369812011719	3	462.934595	1385.78196	0.079191	3.666E-05	4.2837	0.0019831	4.3629	0.0020197	462.9367014144655	44.408	4.3763	41.698	41.303	45.679	-2.7097					263	87	6	0	0	0	0.68391	2	2620	2620;2644		35.178	2.1388	1	4456400			56532	7740	46640	46682	61923;61924	61923					0.10449602656603929
TFTLQKRVL	9	Unmodified	_TFTLQKRVL_					0	0	0		ENST00000592634.5_1_19:5895457-5895973:-|nuORF	ENST00000592634.5_1_19:5895457-5895973:-|nuORF	ENST00000592634.5_1_19:5895457-5895973:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	553.3385009765625	2	553.340041	1104.66553	-3.3842	-0.0018726	-0.6074	-0.0003361	-3.9916	-0.0022087	553.3396004097149	154.97	0.78694	154.74	154.48	155.26	-0.22696					36	19	3	0	0	0	0.62352	1	15783	15783		29.15	4.9468	1	38307			56533	14138	46641	46683	61925	61925					0.11738284156695045
TFTNPLLPL	9	Unmodified	_TFTNPLLPL_					0	0	0		SALL1|p.I1085Tfs*17|1|0.14|ENSG00000103449|chr16:51138968-51138969|-/G|frameshift_variant;ENSG00000103449|ENST00000251020|SALL1;nc|ENSG00000103449|Q9NSC2-2|SALL1	SALL1|p.I1085Tfs*17|1|0.14|ENSG00000103449|chr16:51138968-51138969|-/G|frameshift_variant	SALL1|p.I1085Tfs*17|1|0.14|ENSG00000103449|chr16:51138968-51138969|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	508.288330078125	2	508.294768	1014.57498	-1.0127	-0.00051475	-3.4638	-0.0017606	-4.4765	-0.0022754	508.2928509798483	121.25	0.84064	121.06	120.8	121.64	-0.19718					34	16	3	0	0	0	0.53957	1	11713	11713		38.806	3.1879	1	41546			56534	2317	46642	46684	61926	61926					0.06827815108431423
TFTRVTLLF	9	Unmodified	_TFTRVTLLF_					0	0	0			REV__ENSG00000196335.13,STK31,chr7,+,I6.1,23722481,23722759|75|4.58|1|intron	REV__ENSG00000196335.13,STK31,chr7,+,I6.1,23722481,23722759|75|4.58|1|intron	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.302490234375	2	549.321317	1096.62808	0.55516	0.00030496	2.4591	0.0013509	3.0143	0.0016558	549.3220441463592	141.66	0.54779	141.66	141.39	141.93	0					14	10	2	0	0	0	0.027462	1	16551	16551		24.203	0	1	23308	+		56535	22810	46643	46685	61927	61927					0.0836319289110179
TFTVIFILGKI	11	Unmodified	_TFTVIFILGKI_					0	0	0			REV__ENST00000357066.7_1_19:2072329-2072617:-|nuORF	REV__ENST00000357066.7_1_19:2072329-2072617:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	626.3894653320312	2	626.389199	1250.76385	0.37775	0.00023662	-1.7391	-0.0010894	-1.3614	-0.00085274	626.3880960980439	164.17	2.6761	164.17	163.08	165.75	0					198	100	2	0	0	0	0.65947	1	19119	19119		39.253	12.56	1	238040	+		56536	24778	46644	46686	61928	61928					0.14849467681915485
TFTVIFILGKI	11	Unmodified	_TFTVIFILGKI_					0	0	0			REV__ENST00000357066.7_1_19:2072329-2072617:-|nuORF	REV__ENST00000357066.7_1_19:2072329-2072617:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	626.3926391601562	2	626.389199	1250.76385	-5.6586	-0.0035445	2.2827	0.0014298	-3.3759	-0.0021146	626.8920656002647	163.54	1.1058	163.31	162.97	164.08	-0.22697					56	36	2	0	0	0	0.69081	2	16675	16675;16681		32.812	4.9302	1	65883	+		56537	24778	46644	46686	61929;61930	61929					0.14849467681915485
TFTVIFILGKI	11	Unmodified	_TFTVIFILGKI_					0	0	0			REV__ENST00000357066.7_1_19:2072329-2072617:-|nuORF	REV__ENST00000357066.7_1_19:2072329-2072617:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	626.3890991210938	2	626.389199	1250.76385	-6.1326	-0.0038414	2.7631	0.0017308	-3.3695	-0.0021106	626.3911365928932	165.03	1.5192	163.62	163.01	164.52	-1.4083					77	54	2	0	0	0	0.70865	2	14385	14375;14385		26.693	6.6961	1	34340	+		56538	24778	46644	46686	61931;61932	61932					0.14849467681915485
TFTVLWIL	8	Unmodified	_TFTVLWIL_					0	0	0			REV__nc|ENSG00000225697|Q9BXS9-6|SLC26A6;REV__nc|ENSG00000225697|Q9BXS9-7|SLC26A6	REV__nc|ENSG00000225697|Q9BXS9-7|SLC26A6	MULTI-MSMS	OvCa99_classI_Rep5	1	496.7937316894531	2	496.794404	991.574254	1.4094	0.00070018	-3.5588	-0.001768	-2.1494	-0.0010678	496.7924735229611	115.22	0.74865	115.22	114.98	115.73	0					32	15	3	0	0	0	0.64377	1	13172	13172		54.765	1.4132	1	446860	+		56539	29139;29140	46645	46687	61933	61933					0.07813020459389008
TFTVWYSL	8	Unmodified	_TFTVWYSL_					0	0	0		ENST00000566622.5_1_15:66794044-66797161:-|nuORF	ENST00000566622.5_1_15:66794044-66797161:-|nuORF	ENST00000566622.5_1_15:66794044-66797161:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.7626953125	2	508.758018	1015.50148	0.8701	0.00044267	-1.4422	-0.00073371	-0.57206	-0.00029104	508.7564509061196	127.24	0.36041	126.17	126.02	126.38	-1.0715					10	6	2	0	0	0	0.028476	1	9954	9954		25.45	0	1	13660			56540	13849	46646	46688	61934	61934					-0.005647333340562
TFTYGPIAV	9	Unmodified	_TFTYGPIAV_					0	0	0			REV__nc|ENSG00000128567|O00592-2|PODXL	REV__nc|ENSG00000128567|O00592-2|PODXL	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.7698059082031	2	484.758018	967.501483	-0.51974	-0.00025195	-2.2886	-0.0011094	-2.8083	-0.0013614	484.75639092227243	52.236	0.43883	52.236	51.995	52.434	0					20	9	4	0	0	0	0.027425	1	4081	4081		40.573	0	1	250550	+		56541	18858	46647	46689	61935	61935					0.01643266665939791
TFTYPKIF	8	Unmodified	_TFTYPKIF_					0	0	0			REV__tr|A0A7D6VMX5|A0A7D6VMX5_9CLOTGlycosylhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13505PE=3SV=1	REV__tr|A0A7D6VMX5|A0A7D6VMX5_9CLOTGlycosylhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13505PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.77783203125	2	508.776211	1015.53787	1.0269	0.00052246	1.2048	0.00061298	2.2317	0.0011354	508.7765559243982	154.2	1.1938	154.2	153.78	154.98	0					47	23	3	0	0	0	0.50674	1	18075	18075		76.847	0.072494	1	316470	+		56542	31151	46648	46690	61936	61936					0.03072143562656038
TFVGDGEAAVH	11	Unmodified	_TFVGDGEAAVH_					0	0	0		ENST00000325404.2_1_3:181430381-181430429:+|nuORF	ENST00000325404.2_1_3:181430381-181430429:+|nuORF	ENST00000325404.2_1_3:181430381-181430429:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.8108520507812	2	551.76182	1101.50909	-0.2389	-0.00013182	-3.3383	-0.001842	-3.5772	-0.0019738	551.759888118302	33.099	0.93178	33.099	32.651	33.583	0					24	18	2	0	0	0	0.02557	1	1506	1506		47.657	22.207	1	19217			56543	10402	46649	46691	61937	61937					-0.03760625804443407
TFVKIKASH	9	Unmodified	_TFVKIKASH_					0	0	0		ENSG00000165617|ENST00000395153|DACT1;nc|ENSG00000165617|Q9NYF0|DACT1	ENSG00000165617|ENST00000395153|DACT1	ENSG00000165617|ENST00000395153|DACT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.8048095703125	2	515.805834	1029.59712	-1.1855	-0.00061147	-2.9289	-0.0015107	-4.1143	-0.0021222	515.804239918851	55.171	1.7783	51.924	51.439	53.218	-3.2474					69	34	4	0	0	0	0.56189	1	3479	3479		36.447	2.2742	1	658930			56544	6579	46650	46692	61938	61938					0.08350039576839663
TFVKIKASH	9	Unmodified	_TFVKIKASH_					0	0	0		ENSG00000165617|ENST00000395153|DACT1;nc|ENSG00000165617|Q9NYF0|DACT1	ENSG00000165617|ENST00000395153|DACT1	ENSG00000165617|ENST00000395153|DACT1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.805834	1029.59712	-0.93089	-0.00048016	-3.1769	-0.0016387	-4.1078	-0.0021188	515.8041279173082	54.753	1.3958	51.939	51.424	52.82	-2.8139	0.0077745	-0.00018009	NaN	36.447	58	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196640			56545	6579	46650	46692							0.08350039576839663
TFVPCPGR	8	Unmodified	_TFVPCPGR_					0	0	0			REV__nc|ENSG00000143469|Q8NB59-3|SYT14	REV__nc|ENSG00000143469|Q8NB59-3|SYT14	MULTI-SECPEP	OvCa99_classI_Rep5	1	437.7530517578125	2	438.723455	875.432358	0.64116	0.00028129	-2.7809	-0.0012201	-2.1398	-0.00093878	438.7207897007105	38.951	0.18102	38.951	38.836	39.017	0					7	3	3	0	0	0	0.028476	1	2258	2258		18.324	0	1	17527	+		56546	19842	46651	46693	61939	61939					-0.010340958346091611
TFVPSVEAFD	10	Unmodified	_TFVPSVEAFD_					0	0	0		TNRC18|p.K2750Rfs*164|1|0.14|ENSG00000182095|chr7:5312642-5312643|-/C|frameshift_variant;ENSG00000182095|ENST00000430969|TNRC18;TNRC18|p.R699Lfs*17|1|0.75|ENSG00000182095|chr7:5387728-5387729|-/A|frameshift_variant;TNRC18|p.Y847Sfs*18|1|0.11|ENSG00000182095|chr7:5376915-5376916|-/G|frameshift_variant;TNRC18|p.Y847Rfs*33|1|0.11|ENSG00000182095|chr7:5376916-5376917|-/TGCGCGGGGTGATGGTGGCG|frameshift_variant;nc|ENSG00000182095|O15417-2|TNRC18	TNRC18|p.K2750Rfs*164|1|0.14|ENSG00000182095|chr7:5312642-5312643|-/C|frameshift_variant	TNRC18|p.K2750Rfs*164|1|0.14|ENSG00000182095|chr7:5312642-5312643|-/C|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.2733764648438	2	556.268947	1110.52334	0.98063	0.0005455	-1.9067	-0.0010607	-0.92609	-0.00051516	556.2670088203095	158.92	0.34851	158.92	158.74	159.09	0					9	6	2	0	0	0	0.026802	1	18616	18616		26.693	0	1	25667			56547	7967	46652	46694	61940	61940					-0.02749973376126036
TFVSFRIA	8	Unmodified	_TFVSFRIA_					0	0	0		tr|A0A7D7A0U4|A0A7D7A0U4_9CLOTM50familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11160PE=4SV=1	tr|A0A7D7A0U4|A0A7D7A0U4_9CLOTM50familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11160PE=4SV=1	tr|A0A7D7A0U4|A0A7D7A0U4_9CLOTM50familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11160PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	470.7551574707031	2	470.766178	939.517802	-0.4275	-0.00020125	-0.18511	-8.7142E-05	-0.6126	-0.00028839	470.7659783727648	59.536	0.20992	56.756	56.61	56.82	-2.7801					5	3	2	0	0	0	0.028476	1	4348	4348		50.025	0	1	8993.3			56548	36009	46653	46695	61941	61941					0.04562392622699463
TFVTITLTF	9	Unmodified	_TFVTITLTF_					0	0	0			REV__RUNX2|p.K195M|1|0.79|ENSG00000124813|chr6:45437950-45437950|A/T|missense_variant	REV__RUNX2|p.K195M|1|0.79|ENSG00000124813|chr6:45437950-45437950|A/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	521.7885131835938	2	521.794601	1041.57465	-6.3237	-0.0032997	-3.6323	-0.0018953	-9.956	-0.005195	521.7928197803336	157.74	0.67743	156.57	156.31	156.98	-1.1707					34	21	2	0	0	0	0.53957	1	13615	13615		38.806	0	1	15742	+		56549	16542	46654	46696	61942	61942					0.05552395388554032
TFVTITLTF	9	Unmodified	_TFVTITLTF_					0	0	0			REV__RUNX2|p.K195M|1|0.79|ENSG00000124813|chr6:45437950-45437950|A/T|missense_variant	REV__RUNX2|p.K195M|1|0.79|ENSG00000124813|chr6:45437950-45437950|A/T|missense_variant	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	521.794601	1041.57465	-6.3237	-0.0032997	-3.6323	-0.0018953	-9.956	-0.005195	521.7928197803336	157.74	0.67743	156.57	156.31	156.98	-1.1707	-0.018802	7.1686E-05	NaN	38.806	34	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15742	+		56550	16542	46654	46696							0.05552395388554032
TFVTITLTF	9	Unmodified	_TFVTITLTF_					0	0	0			REV__RUNX2|p.K195M|1|0.79|ENSG00000124813|chr6:45437950-45437950|A/T|missense_variant	REV__RUNX2|p.K195M|1|0.79|ENSG00000124813|chr6:45437950-45437950|A/T|missense_variant	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	521.794601	1041.57465	-6.0529	-0.0031583	-3.8424	-0.0020049	-9.8952	-0.0051633	522.2939441447656	158.19	1.4793	156.6	155.83	157.31	-1.5859	0.018802	-0.00014752	NaN	38.806	45	42	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15576	+		56551	16542	46654	46696							0.05552395388554032
TFVVEKKR	8	Unmodified	_TFVVEKKR_					0	0	0		ENSG00000183826|ENST00000481247|BTBD9	ENSG00000183826|ENST00000481247|BTBD9	ENSG00000183826|ENST00000481247|BTBD9	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.25958251953125	2	503.805834	1005.59712	0.18019	9.0783E-05	0.5725	0.00028843	0.75269	0.00037921	503.80590142722076	52.789	0.30306	52.789	52.653	52.956	0					8	6	2	0	0	0	0.028476	1	4145	4145		37.159	0	1	97093			56552	8112	46655	46697	61943	61943					0.09454039576849027
TFVVEKKR	8	Unmodified	_TFVVEKKR_					0	0	0		ENSG00000183826|ENST00000481247|BTBD9	ENSG00000183826|ENST00000481247|BTBD9	ENSG00000183826|ENST00000481247|BTBD9	MULTI-MATCH	OvCa9_classI_Rep2	2		2	503.805834	1005.59712	-1.4753	-0.00074327	1.5264	0.00076899	0.051044	2.5716E-05	503.80641084697504	55.534	0.94386	52.73	52.182	53.126	-2.804	-0.022763	0.00052996	NaN	21.96	45	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	140230			56553	8112	46655	46697							0.09454039576849027
TFVVEKKR	8	Unmodified	_TFVVEKKR_					0	0	0		ENSG00000183826|ENST00000481247|BTBD9	ENSG00000183826|ENST00000481247|BTBD9	ENSG00000183826|ENST00000481247|BTBD9	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	503.805834	1005.59712	-0.76512	-0.00038547	0.61146	0.00030806	-0.15366	-7.7413E-05	503.8059855675786	56.033	1.2161	52.739	52.361	53.577	-3.2944	-0.013443	-0.0003919	NaN	21.96	57	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	440540			56554	8112	46655	46697							0.09454039576849027
TFVVLACRLT	10	Unmodified	_TFVVLACRLT_					0	0	0			REV__ENSG00000101438|ENST00000217420|SLC32A1	REV__ENSG00000101438|ENST00000217420|SLC32A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.7664184570312	2	561.820627	1121.6267	1.0177	0.00057176	2.7942	0.0015699	3.8119	0.0021416	562.3244169076471	45.777	0.22467	45.777	45.71	45.934	0					7	4	2	0	0	0	0.026688	1	3188	3188		32.812	0	1	94227	+		56555	17502	46656	46698	61944	61944					0.07075235530669488
TFWRQQDK	8	Unmodified	_TFWRQQDK_					0	0	0			REV__nc|ENSG00000144535|Q8IYB7-5|DIS3L2	REV__nc|ENSG00000144535|Q8IYB7-5|DIS3L2	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.7802734375	2	554.780348	1107.54614	-1.881	-0.0010436	0.47843	0.00026542	-1.4026	-0.00077814	554.7804236053477	148.65	1.6994	147.21	146.98	148.68	-1.4344					63	34	3	0	0	0	0.74971	1	14706	14706		26.796	3.7536	1	77925	+		56556	28908	46657	46699	61945	61945					-0.003329094680111666
TFYANSYTKG	10	Unmodified	_TFYANSYTKG_					0	0	0			REV__ENSG00000112902|ENST00000382496|SEMA5A	REV__ENSG00000112902|ENST00000382496|SEMA5A	MULTI-MSMS	OvCa99_classI_Rep5	1	576.2742309570312	2	576.272021	1150.52949	-1.0616	-0.00061177	0.26898	0.00015501	-0.79262	-0.00045677	576.2720169066247	26.206	2.7952	26.206	25.893	28.688	0					113	55	3	0	0	0	0.72142	1	758	758		28.081	0.19925	1	198310	+		56557	18125	46658	46700	61946	61946					-0.039754551446321784
TFYNFVLTN	9	Unmodified	_TFYNFVLTN_					0	0	0		nc|ENSG00000105426|Q13332-7|PTPRS;nc|ENSG00000105426|Q13332-5|PTPRS;ENST00000588552.5_1_19:5159112-5286160:-|nuORF;nc|ENSG00000105426|Q13332-6|PTPRS;nc|ENSG00000105426|Q13332-3|PTPRS;nc|ENSG00000105426|Q13332-4|PTPRS;nc|ENSG00000105426|Q13332-2|PTPRS;ENSG00000105426|ENST00000262963|PTPRS	nc|ENSG00000105426|Q13332-7|PTPRS	nc|ENSG00000105426|Q13332-7|PTPRS	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.7672729492188	2	559.779482	1117.54441	0.77252	0.00043244	-0.65271	-0.00036537	0.11982	6.7071E-05	559.778449477572	58.005	0.7131	58.005	57.775	58.488	0					30	16	4	0	0	0	0.027462	1	4926	4926		37.159	2.9866	1	1427600			56558	2457	46659	46701	61947	61947					-0.009659632766215509
TFYNSVVD	8	Unmodified	_TFYNSVVD_					0	0	0			REV__HSP90B1-TEX261|1|fusion	REV__HSP90B1-TEX261|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.78009033203125	2	472.721633	943.428712	2.0752	0.00098099	4.3106	0.0020377	6.3858	0.0030187	472.7235370467056	134.21	0.28439	134.21	134.01	134.29	0					10	5	2	0	0	0	0.028476	1	15599	15599		45.952	7.1458	1	63217	+		56559	19889	46660	46702	61948	61948					-0.04526487127463952
TFYRTGIFL	9	Unmodified	_TFYRTGIFL_					0	0	0			REV__ENST00000556588.5_1_14:74425789-74426246:+|nuORF	REV__ENST00000556588.5_1_14:74425789-74426246:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.793701171875	2	559.305667	1116.59678	0.021445	1.1994E-05	-1.0669	-0.0005967	-1.0454	-0.00058471	559.3056946429291	54.578	0.38383	54.578	54.334	54.718	0					12	8	2	0	0	0	0.027433	1	4388	4388		42.396	0	1	121020	+		56560	27564	46661	46703	61949	61949					0.04314619856995705
TGAAIKKLRK	10	Unmodified	_TGAAIKKLRK_					0	0	0		nc|ENSG00000206384|A6NMZ7-2|COL6A6;ENSG00000206384|ENST00000358511|COL6A6	nc|ENSG00000206384|A6NMZ7-2|COL6A6	nc|ENSG00000206384|A6NMZ7-2|COL6A6	MULTI-MSMS	OvCa9_classI_Rep2	2	543.3599243164062	2	543.361308	1084.70806	-0.87734	-0.00047672	0.68604	0.00037277	-0.1913	-0.00010395	543.3615318559256	32.393	0.98863	29.683	29.431	30.42	-2.7097					49	19	3	0	0	0	0.83835	1	1090	1090		14.137	0	1	167070			56561	9097	46662	46704	61950	61950					0.1690967928493592
TGAARVLAAR	10	Unmodified	_TGAARVLAAR_					0	0	0			REV__ENSG00000182327|ENST00000331264|GLTPD2	REV__ENSG00000182327|ENST00000331264|GLTPD2	MULTI-MSMS	OvCa9_classI_Rep2	2	493.2985534667969	2	493.298707	984.582862	3.1299	0.001544	-3.147	-0.0015524	-0.017108	-8.4391E-06	493.29693905803276	26.988	0.77444	24.278	24.097	24.871	-2.7097					47	21	3	0	0	0	0.69073	1	424	424		31.53	1.0262	1	72756	+		56562	22282	46663	46705	61951	61951					0.08995387148547707
TGAFGKIL	8	Unmodified	_TGAFGKIL_					0	0	0		ENST00000592005.5_1_18:44497642-44497873:+|nuORF	ENST00000592005.5_1_18:44497642-44497873:+|nuORF	ENST00000592005.5_1_18:44497642-44497873:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	403.74371337890625	2	403.742171	805.469789	3.804	0.0015358	-0.78096	-0.00031531	3.023	0.0012205	403.74168690254487	86.224	1.3842	86.224	85.954	87.338	0					61	33	3	0	0	0	0.57878	1	9073	9073		68.485	0	1	3947000			56563	14128	46664	46706	61952	61952					0.059273187026519736
TGAGTGRLV	9	Unmodified	_TGAGTGRLV_					0	0	0			REV__ENST00000589240.1_1_17:74261784-74261943:+|nuORF	REV__ENST00000589240.1_1_17:74261784-74261943:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	415.260986328125	2	416.237784	830.461016	-0.96997	-0.00040374	2.1203	0.00088255	1.1503	0.00047881	416.2385285560097	34.297	1.1874	31.588	31.267	32.454	-2.7097					39	23	2	0	0	0	0.027462	1	1326	1326		37.159	1.5408	1	32792	+		56564	27905	46665	46707	61953	61953					0.03900345066188038
TGAGTGRLV	9	Unmodified	_TGAGTGRLV_					0	0	0			REV__ENST00000589240.1_1_17:74261784-74261943:+|nuORF	REV__ENST00000589240.1_1_17:74261784-74261943:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	416.237784	830.461016	0.70369	0.0002929	0.83258	0.00034655	1.5363	0.00063945	416.2379867373347	31.972	0.34726	31.972	31.807	32.154	0	0.19232	-0.00074692	NaN	45.952	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30320	+		56565	27905	46665	46707							0.03900345066188038
TGAIKPRAVK	10	Unmodified	_TGAIKPRAVK_					0	0	0		nc|ENSG00000288701|Q5JSZ5|PRRC2B;nc|ENSG00000288701|Q5JSZ5-2|PRRC2B;nc|ENSG00000288701|Q5JSZ5-3|PRRC2B;nc|ENSG00000288701|Q5JSZ5-5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	nc|ENSG00000288701|Q5JSZ5|PRRC2B	MULTI-MSMS	OvCa99_classI_Rep5	1	520.8349609375	2	520.832383	1039.65021	-0.51493	-0.00026819	0.27485	0.00014315	-0.24008	-0.00012504	520.8323912883094	30.955	0.4869	30.955	30.731	31.218	0					24	9	4	0	0	0	0.50999	1	1229	1229		52.937	1.6012	1	718070			56566	15389	46666	46708	61954	61954					0.13197417359515384
TGAQPQIVVL	10	Unmodified	_TGAQPQIVVL_					0	0	0		ENSG00000158077|ENST00000299481|NLRP14	ENSG00000158077|ENST00000299481|NLRP14	ENSG00000158077|ENST00000299481|NLRP14	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.8255615234375	2	513.303124	1024.5917	-0.61411	-0.00031523	-2.7722	-0.001423	-3.3863	-0.0017382	513.3016448099116	67.52	0.24799	64.859	64.693	64.941	-2.661					9	4	3	0	0	0	0.026734	1	5269	5269		47.657	3.5405	1	11754			56567	5929	46667	46709	61955	61955					0.0803831599437217
TGATSRQIFL	10	Unmodified	_TGATSRQIFL_					0	0	0			REV__ENST00000515744.5_1_4:93744106-94033158:+|nuORF	REV__ENST00000515744.5_1_4:93744106-94033158:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	547.3023071289062	2	547.303655	1092.59276	0.56244	0.00030782	-3.2748	-0.0017923	-2.7124	-0.0014845	547.30162768917	159.54	1.2192	159.54	159.24	160.45	0					63	24	4	0	0	0	0.45822	1	18729	18729		60.118	1.3363	1	381630	+		56568	20273	46668	46710	61956	61956					0.050165303632638825
TGEKVAIKVI	10	Unmodified	_TGEKVAIKVI_					0	0	0		ENSG00000142149|ENST00000270112|HUNK	ENSG00000142149|ENST00000270112|HUNK	ENSG00000142149|ENST00000270112|HUNK	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.3070068359375	2	529.334424	1056.6543	1.637	0.0008665	-3.3549	-0.0017759	-1.718	-0.00090939	529.3322952403389	103.08	0.2066	103.08	102.93	103.14	0					6	4	2	0	0	0	0.026867	1	11490	11490		42.864	0	1	210860			56569	4955	46669	46711	61957	61957					0.12823462062578983
TGGGGGGG	8	Unmodified	_TGGGGGGG_					0	0	0		nc|ENSG00000214655|A7E2V4-4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4-5|ZSWIM8;nc|ENSG00000214655|A7E2V4-2|ZSWIM8;ZSWIM8|p.A1142Efs*3|1|0.08|ENSG00000214655|chr10:73797383-73797384|CC/-|frameshift_variant;nc|ENSG00000080709|Q9H2S1|KCNN2;ENSG00000080709|ENST00000673685|KCNN2;ENSG00000130675|ENST00000252971|MNX1;ENST00000446546.2_1_10:75545483-75546011:+|nuORF;nc|ENSG00000171634|Q12830|BPTF;ENSG00000171634|ENST00000306378|BPTF;nc|ENSG00000171634|Q12830-4|BPTF;nc|ENSG00000118058|Q03164-2|KMT2A;nc|ENSG00000118058|Q03164|KMT2A;ENSG00000118058|ENST00000534358|KMT2A;KMT2A|p.P2471Lfs*35|1|0.08|ENSG00000118058|chr11:118503312-118503312|C/-|frameshift_variant;KMT2A|p.L792Sfs*31|1|0.03|ENSG00000118058|chr11:118473531-118473532|-/AAGT|frameshift_variant;nc|ENSG00000161681|Q9Y566-3|SHANK1;ENSG00000161681|ENST00000293441|SHANK1;nc|ENSG00000161681|Q9Y566-2|SHANK1;nc|ENSG00000276644|Q9UI36-4|DACH1;nc|ENSG00000276644|Q9UI36-3|DACH1;ENSG00000276644|ENST00000613252|DACH1;nc|ENSG00000276644|Q9UI36|DACH1;ENSG00000170185|ENST00000307017|USP38	nc|ENSG00000214655|A7E2V4-4|ZSWIM8;REV__CON__Q6IFZ6;nc|ENSG00000171634|Q12830|BPTF;REV__nc|ENSG00000132466|O75179-2|ANKRD17;nc|ENSG00000118058|Q03164-2|KMT2A;REV__nc|ENSG00000130224|Q5VUJ6-2|LRCH2;REV__ENSG00000116754|ENST00000370949|SRSF11;nc|ENSG00000161681|Q9Y566-3|SHANK1;nc|ENSG00000276644|Q9UI36-4|DACH1;REV__nc|ENSG00000136352|P43699|NKX2-1;ENSG00000170185|ENST00000307017|USP38	nc|ENSG00000171634|Q12830|BPTF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.8209228515625	1	519.215766	518.208489	1.8185	0.00094418	4.1169	0.0021376	5.9354	0.0030817	519.2206152681963	137.19	0.1958	135.64	135.57	135.76	-1.5437					5	3	2	0	0	0	0.028476	1	13327	13327		1.4648	0	1	4233		+	56570	7221;3286;9177;16218;19080;18931;6136;18318;9580;19380;7080	46670	46712	61958	61958					-0.06988667944369809
TGGPAVWK	8	Unmodified	_TGGPAVWK_					0	0	0		ENST00000560852.1_1_14:24630531-24632747:+|nuORF;ENST00000560365.5_1_14:24630521-24632747:+|nuORF;ENST00000561415.1_1_14:24630521-24633357:+|nuORF;ENSG00000213928|ENST00000396864|IRF9	ENST00000560852.1_1_14:24630531-24632747:+|nuORF	ENST00000560852.1_1_14:24630531-24632747:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	407.23358154296875	2	408.224146	814.433738	0.050416	2.0581E-05	-4.1022	-0.0016746	-4.0518	-0.001654	408.2223248579718	43.912	0.85355	40.904	40.641	41.495	-3.0074					21	16	2	0	0	0	0.028476	1	2191	2191		12.959	0	1	30182			56571	9156	46671	46713	61959	61959					0.019098615258030804
TGHPRKVT	8	Unmodified	_TGHPRKVT_					0	0	0		ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	ENSG00000039319|ENST00000505560|ZFYVE16	MULTI-MSMS	OvCa9_classI_Rep3	3	448.2588806152344	2	448.259051	894.503549	-2.462	-0.0011036	2.7472	0.0012315	0.28525	0.00012786	448.2601337945915	142.71	1.2357	141.7	141.38	142.62	-1.0102					68	24	5	0	0	0	0.75723	1	11862	11862		23.042	1.3402	1	329850			56572	1104	46672	46714	61960	61960					0.05207740194430244
TGIAPYAKSLI	11	Unmodified	_TGIAPYAKSLI_					0	0	0			REV__ENSG00000123500|ENST00000651968|COL10A1	REV__ENSG00000123500|ENST00000651968|COL10A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3294067382812	2	567.331882	1132.64921	-0.48412	-0.00027465	-3.1025	-0.0017602	-3.5866	-0.0020348	567.3299446868054	145.54	4.8872	144.11	142.68	147.57	-1.4357					247	95	4	0	0	0	0.71789	1	14266	14266		23.523	0	1	208760	+		56573	18646	46673	46715	61961	61961					0.0881915819995811
TGIFFWVSD	9	Unmodified	_TGIFFWVSD_					0	0	0			REV__ENST00000471540.5_1_21:46685399-46685959:-|nuORF	REV__ENST00000471540.5_1_21:46685399-46685959:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.3284301757812	2	536.260925	1070.5073	-0.60026	-0.00032189	-4.0869	-0.0021916	-4.6871	-0.0025135	536.2588447426978	59.708	0.5883	56.316	56.051	56.639	-3.392					20	11	3	0	0	0	0.027462	1	4040	4040		35.618	0.41757	1	61360	+		56574	26288	46674	46716	61962	61962					-0.025136348223668392
TGIQLGAPI	9	Unmodified	_TGIQLGAPI_					0	0	0		ENST00000478443.1_1_17:20910052-20910178:-|nuORF	ENST00000478443.1_1_17:20910052-20910178:-|nuORF	ENST00000478443.1_1_17:20910052-20910178:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	435.2590637207031	2	435.258185	868.501818	-0.25326	-0.00011023	0.49423	0.00021512	0.24097	0.00010488	435.25828083554745	53.122	1.2646	49.914	49.651	50.915	-3.208					73	24	5	0	0	0	0.21231	1	3250	3250		74.255	2.9593	1	754620			56575	12492	46675	46717	61963	61963					0.06230686385822537
TGIVHAKT	8	Unmodified	_TGIVHAKT_					0	0	0			REV__ENSG00000126861|ENST00000247271|OMG	REV__ENSG00000126861|ENST00000247271|OMG	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.2110900878906	2	413.742702	825.470852	0.027399	1.1336E-05	2.9645	0.0012265	2.9919	0.0012379	413.74338120310625	49.589	0.56983	49.589	49.33	49.899	0					18	12	2	0	0	0	0.028476	1	3720	3720		31.955	8.9124	1	99912	+		56576	18800	46676	46718	61964	61964					0.05113533071573784
TGKKSEKGPVC	11	Unmodified	_TGKKSEKGPVC_					0	0	0		ENST00000498186.5_1_7:148514900-148581332:-|nuORF;nc|ENSG00000106462|Q15910-3|EZH2;nc|ENSG00000106462|Q15910|EZH2;ENSG00000106462|ENST00000320356|EZH2;nc|ENSG00000106462|Q15910-5|EZH2;nc|ENSG00000106462|Q15910-4|EZH2	ENST00000498186.5_1_7:148514900-148581332:-|nuORF	ENST00000498186.5_1_7:148514900-148581332:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.3296508789062	2	567.302798	1132.59104	-2.6783	-0.0015194	-4.3526	-0.0024692	-7.0309	-0.0039887	567.3003096929438	142.18	3.0668	141.17	140.14	143.21	-1.0106					79	61	2	0	0	0	0.025612	1	11755	11755		43.651	9.7292	1	17129			56577	2554	46677	46719	61965	61965					0.03005153283038453
TGKPVTLKHV	10	Unmodified	_TGKPVTLKHV_					0	0	0		ENSG00000160870|ENST00000336374|CYP3A7;ENSG00000282301|ENST00000620220|CYP3A7-CYP3A51P;nc|ENSG00000160870|P24462-2|CYP3A7	ENSG00000160870|ENST00000336374|CYP3A7	ENSG00000160870|ENST00000336374|CYP3A7	MULTI-MSMS	OvCa9_classI_Rep3	3	540.33154296875	2	540.332216	1078.64988	-1.2676	-0.00068491	-2.6392	-0.001426	-3.9067	-0.0021109	540.3307152267141	139.22	4.0818	138.16	137	141.08	-1.0595					200	82	3	0	0	0	0.79213	1	11503	11503		19.997	0.89325	1	55828			56578	6099	46678	46720	61966	61966					0.11369997639667417
TGMVLDKLEI	10	Oxidation (M)	_TGM(Oxidation (M))VLDKLEI_		TGM(1)VLDKLEI		TGM(96)VLDKLEI	0	0	1			REV__ENSG00000198911|ENST00000361204|SREBF2	REV__ENSG00000198911|ENST00000361204|SREBF2	MULTI-MSMS	OvCa99_classI_Rep5	1	567.812744140625	2	567.807382	1133.60021	2.0596	0.0011695	-3.4321	-0.0019488	-1.3725	-0.00077933	567.8052905846116	117.57	0.79272	117.57	116.91	117.7	0					33	16	4	0	0	0	0.19075	1	13459	13459		95.815	10.654	1	577240	+		56579	23092	46679	46721	61967	61967		540			0.03875501848665408
TGMVLDKLEI	10	Oxidation (M)	_TGM(Oxidation (M))VLDKLEI_					0	0	1			REV__ENSG00000198911|ENST00000361204|SREBF2	REV__ENSG00000198911|ENST00000361204|SREBF2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	567.807382	1133.60021	-1.4619	-0.00083005	-2.276	-0.0012923	-3.7379	-0.0021224	567.8060574355131	117.59	0.34715	117.47	117.26	117.61	-0.12868	0.071934	0.00093	NaN	95.815	15	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28420	+		56580	23092	46679	46721				540			0.03875501848665408
TGMVLDKLEI	10	Oxidation (M)	_TGM(Oxidation (M))VLDKLEI_					0	0	1			REV__ENSG00000198911|ENST00000361204|SREBF2	REV__ENSG00000198911|ENST00000361204|SREBF2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	567.807382	1133.60021	-0.39743	-0.00022566	-4.1033	-0.0023299	-4.5007	-0.0025555	567.8053293110368	118.34	0.34769	117.31	117.08	117.43	-1.0324	-0.087568	-0.0011451	NaN	95.815	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42167	+		56581	23092	46679	46721				540			0.03875501848665408
TGMVLDKLEI	10	Oxidation (M)	_TGM(Oxidation (M))VLDKLEI_					0	0	1			REV__ENSG00000198911|ENST00000361204|SREBF2	REV__ENSG00000198911|ENST00000361204|SREBF2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	567.807382	1133.60021	-0.57007	-0.00032369	-3.6478	-0.0020712	-4.2179	-0.0023949	567.8053354363637	118.57	0.47325	117.23	116.89	117.36	-1.3444	-0.16446	-0.00062781	NaN	95.815	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50665	+		56582	23092	46679	46721				540			0.03875501848665408
TGNRAISLTL	10	Unmodified	_TGNRAISLTL_					0	0	0		MUC16|p.P1927T|1|0.09|ENSG00000181143|chr19:8975360-8975360|G/T|missense_variant	MUC16|p.P1927T|1|0.09|ENSG00000181143|chr19:8975360-8975360|G/T|missense_variant	MUC16|p.P1927T|1|0.09|ENSG00000181143|chr19:8975360-8975360|G/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3054809570312	2	523.303655	1044.59276	0.3552	0.00018588	2.7424	0.0014351	3.0976	0.001621	523.3049818602126	107.67	1.863	107.37	107.07	108.93	-0.30836					109	37	6	0	0	0	0.64697	1	10085	10085		36.447	0.82846	1	586410			56583	14845	46680	46722	61968	61968					0.07224530363282611
TGPKNPLL	8	Unmodified	_TGPKNPLL_					0	0	0		ENST00000367712.2_1_1:173628194-173628566:-|nuORF;ENSG00000183831|ENST00000333279|ANKRD45;nc|ENSG00000285777|Q5TZF3-1|ANKRD45	ENST00000367712.2_1_1:173628194-173628566:-|nuORF	ENST00000367712.2_1_1:173628194-173628566:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	420.25250244140625	2	420.252903	838.491253	0.41101	0.00017273	-0.075014	-3.1525E-05	0.336	0.0001412	420.2527341495351	108.37	2.424	108.15	107.78	110.2	-0.22498					119	48	4	0	0	0	0.62934	1	10157	10157		57.811	2.3071	1	477420			56584	8114	46681	46723	61969	61969					0.06554703731376321
TGPPGNVSRIN	11	Unmodified	_TGPPGNVSRIN_					0	0	0			REV__tr|A0A7D6VXP0|A0A7D6VXP0_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09465PE=4SV=1	REV__tr|A0A7D6VXP0|A0A7D6VXP0_9CLOTATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09465PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	556.2972412109375	2	556.296362	1110.57817	-0.88867	-0.00049436	2.2507	0.001252	1.362	0.00075767	556.297489303825	146.66	1.1662	145.22	144.86	146.02	-1.4357					51	22	3	0	0	0	0.7046	1	14425	14425		28.081	5.039	1	134020	+		56585	31783	46682	46724	61970	61970					0.027304582151600698
TGRPRKKPPTG	11	Unmodified	_TGRPRKKPPTG_					0	0	0		ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8552856445312	2	597.856921	1193.69929	-3.1766	-0.0018991	2.2834	0.0013652	-0.89312	-0.00053396	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.66495	5	14903	14810;14903;14931;14936;14960		38.754	6.2571	1	436470			56586	12400	46683	46725	61971;61972;61973;61974;61975	61972					0.11018705648439209
TGRPRKKPPTG	11	Unmodified	_TGRPRKKPPTG_					0	0	0		ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8558349609375	2	597.856921	1193.69929	-2.7036	-0.0016164	1.7084	0.0010214	-0.99524	-0.00059501	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.68757	1	12515	12515		33.922	3.418	1	591030			56587	12400	46683	46725	61976	61976					0.11018705648439209
TGRPRKKPPTG	11	Unmodified	_TGRPRKKPPTG_					0	0	0		ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8565063476562	2	597.856921	1193.69929	-1.5377	-0.00091935	0.67572	0.00040398	-0.86202	-0.00051536	597.8570606153338	148.28	4.8676	146.85	145.38	150.25	-1.435					291	102	5	0	0	0	0.65063	2	14630	14582;14630		40.058	5.0316	1	767860			56588	12400	46683	46725	61977;61978	61978					0.11018705648439209
TGRPRKKPPTG	11	Unmodified	_TGRPRKKPPTG_					0	0	0		ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	597.8565063476562	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.2	1	147.77	147.27	148.27	-1.4344								0	0	0	0.19406	1	14713	14713		33.922	2.3918	1				56589	12400	46683	46725	61979	61979					0.11018705648439209
TGRPRKKPPTG	11	Unmodified	_TGRPRKKPPTG_					0	0	0		ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	ENST00000472918.5_1_22:26902745-26908398:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	597.857421875	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	150.81	1	149.37	148.87	149.87	-1.4344								0	0	0	0.19474	1	14902	14902		27.047	4.4677	1				56590	12400	46683	46725	61980	61980					0.11018705648439209
TGRRPKPEI	9	Unmodified	_TGRRPKPEI_					0	0	0		nc|ENSG00000144857|Q9BWV1|BOC;ENSG00000144857|ENST00000682979|BOC;ENST00000497495.1_1_3:112993349-112998152:+|nuORF	nc|ENSG00000144857|Q9BWV1|BOC	nc|ENSG00000144857|Q9BWV1|BOC	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.31201171875	2	527.311815	1052.60908	0.015558	8.2042E-06	-0.0018204	-9.599E-07	0.013738	7.2443E-06	527.3116773423632	33.079	1.7375	30.384	29.903	31.641	-2.6954					77	33	4	0	0	0	0.46356	1	841	841		45.972	1.8554	1	327680			56591	5189	46684	46726	61981	61981					0.08487656320039605
TGSGIYDLTL	10	Unmodified	_TGSGIYDLTL_					0	0	0			REV__tr|A0A7D6VRV3|A0A7D6VRV3_9CLOTCollagen-liketriplehelixrepeat-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03105PE=4SV=1	REV__tr|A0A7D6VRV3|A0A7D6VRV3_9CLOTCollagen-liketriplehelixrepeat-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03105PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.7352294921875	2	520.268947	1038.52334	0.8211	0.00042719	-1.2772	-0.0006645	-0.45612	-0.00023731	520.7680911364668	91.157	0.19759	91.157	91.057	91.255	0					6	4	2	0	0	0	0.02661	1	9799	9799		40.778	0	1	95678	+		56592	31449	46685	46727	61982	61982					0.005620266238565819
TGSMVTDAELL	11	Unmodified	_TGSMVTDAELL_					0	0	0			REV__tr|A0A553SML2|A0A553SML2_NIACIFAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_22660PE=4SV=1	REV__tr|A0A553SML2|A0A553SML2_NIACIFAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_22660PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	568.7810668945312	2	568.778822	1135.54309	1.871	0.0010642	-0.61415	-0.00034932	1.2569	0.00071489	568.7784685174931	129.24	1.455	129.24	128.88	130.34	0					59	30	4	0	0	0	0.48738	1	15006	15006		54.776	1.8396	1	516910	+		56593	30345	46686	46728	61983	61983					-0.019259654276766014
TGSPAQVSH	9	Unmodified	_TGSPAQVSH_					0	0	0		ENST00000405140.7_2_8:27468732-27468852:-|nuORF	ENST00000405140.7_2_8:27468732-27468852:-|nuORF	ENST00000405140.7_2_8:27468732-27468852:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	441.2875061035156	2	442.217049	882.419545	0.15423	6.8203E-05	-0.0060736	-2.6859E-06	0.14816	6.5518E-05	442.21702438420374	37.036	0.27357	37.036	36.84	37.114	0					10	5	2	0	0	0	0.027462	1	2000	2000		37.812	7.4938	1	49836			56594	11460	46687	46729	61984	61984					-0.026368356931357084
TGSSLNEVIV	10	Unmodified	_TGSSLNEVIV_					0	0	0			REV__IFT172|p.K339E|1|0.69|ENSG00000138002|chr2:27478147-27478147|T/C|missense_variant	REV__IFT172|p.K339E|1|0.69|ENSG00000138002|chr2:27478147-27478147|T/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	509.8058776855469	2	509.774396	1017.53424	0.15226	7.7616E-05	0.94569	0.00048209	1.0979	0.00055971	509.7748115471222	111.25	0.73938	111.11	110.73	111.47	-0.13961					25	14	2	0	0	0	0.026714	1	10479	10479		42.864	10.052	1	23598	+		56595	28298	46688	46730	61985	61985					0.02617428998144078
TGTGAGRIP	9	Unmodified	_TGTGAGRIP_					0	0	0			REV__ENST00000373573.7_1_X:71792621-71792867:-|nuORF	REV__ENST00000373573.7_1_X:71792621-71792867:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	415.2301330566406	2	415.229959	828.445365	0.22733	9.4392E-05	0.29902	0.00012416	0.52634	0.00021855	415.23008863919307	38.47	0.90199	38.47	38.161	39.063	0					41	19	4	0	0	0	0.44568	1	2189	2189		47.657	6.8792	1	490710	+		56596	25045	46689	46731	61986	61986					0.024280585491396778
TGTKVAMLVL	10	Unmodified	_TGTKVAMLVL_					0	0	0			REV__ENST00000488537.1_1_1:145439826-145440208:+|nuORF	REV__ENST00000488537.1_1_1:145439826-145440208:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	516.8097534179688	2	516.809728	1031.6049	0.52108	0.0002693	-1.9876	-0.0010272	-1.4665	-0.00075792	516.8085760359679	158.4	2.0041	158.4	158.05	160.06	0					83	41	4	0	0	0	0.5675	1	18544	18544		45.972	1.5951	1	718910	+		56597	26621	46690	46732	61987	61987					0.09036430782111893
TGTVSEDVLV	10	Unmodified	_TGTVSEDVLV_					0	0	0		tr|A0A553SJQ2|A0A553SJQ2_NIACIS-adenosylmethioninesynthaseOS=NialliacirculansOX=1397GN=metKPE=3SV=1	tr|A0A553SJQ2|A0A553SJQ2_NIACIS-adenosylmethioninesynthaseOS=NialliacirculansOX=1397GN=metKPE=3SV=1	tr|A0A553SJQ2|A0A553SJQ2_NIACIS-adenosylmethioninesynthaseOS=NialliacirculansOX=1397GN=metKPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	510.26666259765625	2	510.266404	1018.51826	2.5275	0.0012897	-0.17786	-9.0758E-05	2.3497	0.001199	510.2662063391643	80.462	0.67654	80.462	80.234	80.91	0					32	15	3	0	0	0	0.20801	1	8249	8249		93.195	2.5946	1	1929100			56598	33528	46691	46733	61988	61988					0.009737227612617971
TGTVSEDVLV	10	Unmodified	_TGTVSEDVLV_					0	0	0		tr|A0A553SJQ2|A0A553SJQ2_NIACIS-adenosylmethioninesynthaseOS=NialliacirculansOX=1397GN=metKPE=3SV=1	tr|A0A553SJQ2|A0A553SJQ2_NIACIS-adenosylmethioninesynthaseOS=NialliacirculansOX=1397GN=metKPE=3SV=1	tr|A0A553SJQ2|A0A553SJQ2_NIACIS-adenosylmethioninesynthaseOS=NialliacirculansOX=1397GN=metKPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	510.266404	1018.51826	0.33591	0.0001714	-1.3435	-0.00068554	-1.0076	-0.00051414	510.2655560548236	82.097	0.93849	80.448	80.179	81.117	-1.6485	0.12613	-0.0014538	NaN	93.195	20	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37909			56599	33528	46691	46733							0.009737227612617971
TGTVSEDVLV	10	Unmodified	_TGTVSEDVLV_					0	0	0		tr|A0A553SJQ2|A0A553SJQ2_NIACIS-adenosylmethioninesynthaseOS=NialliacirculansOX=1397GN=metKPE=3SV=1	tr|A0A553SJQ2|A0A553SJQ2_NIACIS-adenosylmethioninesynthaseOS=NialliacirculansOX=1397GN=metKPE=3SV=1	tr|A0A553SJQ2|A0A553SJQ2_NIACIS-adenosylmethioninesynthaseOS=NialliacirculansOX=1397GN=metKPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	510.266404	1018.51826	-1.0489	-0.00053524	0.81977	0.0004183	-0.22916	-0.00011693	510.2669948554075	82.456	0.69176	80.159	79.887	80.579	-2.2963	-0.16284	0.0007539	NaN	93.195	27	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154910			56600	33528	46691	46733							0.009737227612617971
TGTVSEDVLV	10	Unmodified	_TGTVSEDVLV_					0	0	0		tr|A0A553SJQ2|A0A553SJQ2_NIACIS-adenosylmethioninesynthaseOS=NialliacirculansOX=1397GN=metKPE=3SV=1	tr|A0A553SJQ2|A0A553SJQ2_NIACIS-adenosylmethioninesynthaseOS=NialliacirculansOX=1397GN=metKPE=3SV=1	tr|A0A553SJQ2|A0A553SJQ2_NIACIS-adenosylmethioninesynthaseOS=NialliacirculansOX=1397GN=metKPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	510.266404	1018.51826	-0.55884	-0.00028516	0.90132	0.00045991	0.34247	0.00017475	510.2666330638118	82.902	0.68161	80.219	79.979	80.66	-2.683	-0.10338	0.00083711	NaN	93.195	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104140			56601	33528	46691	46733							0.009737227612617971
TGVGIRIEK	9	Unmodified	_TGVGIRIEK_					0	0	0			REV__tr|A0A553ST78|A0A553ST78_NIACIPucRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04375PE=3SV=1	REV__tr|A0A553ST78|A0A553ST78_NIACIPucRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04375PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.314697265625	2	486.795466	971.57638	-0.91749	-0.00044663	0.20892	0.0001017	-0.70858	-0.00034493	486.7954442978037	50.087	1.0411	47.293	46.983	48.024	-2.794					38	20	3	0	0	0	0.027426	1	3293	3293		56.721	15.943	1	87643	+		56602	30927	46692	46734	61989	61989					0.08945449197187827
TGVGIRIEK	9	Unmodified	_TGVGIRIEK_					0	0	0			REV__tr|A0A553ST78|A0A553ST78_NIACIPucRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04375PE=3SV=1	REV__tr|A0A553ST78|A0A553ST78_NIACIPucRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04375PE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	486.795466	971.57638	-0.15125	-7.3628E-05	0.53782	0.00026181	0.38658	0.00018818	486.7956275996079	46.989	0.44559	46.989	46.762	47.208	0	-0.19334	1.5715E-05	NaN	56.721	24	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	513760	+		56603	30927	46692	46734							0.08945449197187827
TGVPGVLLI	9	Unmodified	_TGVPGVLLI_					0	0	0			REV__nc|ENSG00000183914|Q9P225-2|DNAH2	REV__nc|ENSG00000183914|Q9P225-2|DNAH2	MULTI-SECPEP	OvCa99_classI_Rep5	1	433.8755798339844	2	434.778754	867.542954	0.43598	0.00018956	1.7917	0.00077901	2.2277	0.00096856	434.7794128699575	56.441	0.61051	56.441	56.178	56.788	0					30	14	3	0	0	0	0.027462	1	4663	4663		25.45	1.2474	1	1165800	+		56604	22394	46693	46735	61990	61990					0.10388447425293634
TGVTLVGR	8	Unmodified	_TGVTLVGR_					0	0	0		ENSG00000261949|ENST00000610896|GFY	ENSG00000261949|ENST00000610896|GFY	ENSG00000261949|ENST00000610896|GFY	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.1955261230469	2	401.742702	801.470852	0.26523	0.00010655	-0.10613	-4.2635E-05	0.1591	6.3918E-05	401.7425843061171	34.655	0.4663	34.655	34.398	34.864	0					17	9	2	0	0	0	0.028476	1	1697	1697		42.396	0	1	256310			56605	9506	46694	46736	61991	61991					0.06217533071571779
TGYGMPRQI	9	Unmodified	_TGYGMPRQI_					0	0	0		ENSG00000158710|ENST00000368097|TAGLN2;nc|ENSG00000158710|P37802-2|TAGLN2;ENST00000478033.1_1_1:159888592-159888742:-|nuORF;ENSG00000144834|ENST00000478951|TAGLN3	ENSG00000158710|ENST00000368097|TAGLN2	ENSG00000158710|ENST00000368097|TAGLN2	MULTI-MSMS	OvCa99_classI_Rep5	1	511.75927734375	2	511.758027	1021.5015	-0.24583	-0.00012581	0.64692	0.00033107	0.40109	0.00020526	511.75819837359035	73.325	0.83412	73.325	72.994	73.829	0					50	20	3	0	0	0	0.22621	2	7207	7175;7207		71.877	27.761	1	7902500			56606	5969	46695	46737	61992;61993	61993					-0.008390566056846183
THAIQKAR	8	Unmodified	_THAIQKAR_					0	0	0		ENST00000434310.1_1_2:140426437-140426773:+|nuORF	ENST00000434310.1_1_2:140426437-140426773:+|nuORF	ENST00000434310.1_1_2:140426437-140426773:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.9375915527344	2	462.772326	923.530098	-1.5536	-0.00071898	2.129	0.00098522	0.57532	0.00026624	462.7731390859729	43.789	1.1562	40.781	40.589	41.745	-3.0074					37	22	3	0	0	0	0.028476	1	2222	2222		25.45	8.0852	1	123100			56607	11837	46696	46738	61994	61994					0.06527429085747372
THAIQKAR	8	Unmodified	_THAIQKAR_					0	0	0		ENST00000434310.1_1_2:140426437-140426773:+|nuORF	ENST00000434310.1_1_2:140426437-140426773:+|nuORF	ENST00000434310.1_1_2:140426437-140426773:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	462.772326	923.530098	0.40509	0.00018747	-0.2684	-0.00012421	0.1367	6.3259E-05	462.77206104092	43.605	0.64466	40.895	40.658	41.303	-2.7097	0.05704	-0.0016265	NaN	24.203	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30264			56608	11837	46696	46738							0.06527429085747372
THAKRAYR	8	Unmodified	_THAKRAYR_					0	0	0		nc|ENSG00000109339|P53779-2|MAPK10;nc|ENSG00000109339|P53779-3|MAPK10;ENSG00000109339|ENST00000641462|MAPK10;ENST00000476134.1_1_10:49609691-49618268:+|nuORF;nc|ENSG00000050748|P45984-5|MAPK9;nc|ENSG00000107643|P45983-5|MAPK8;ENST00000397072.7_1_5:179665329-179706839:-|nuORF;nc|ENSG00000050748|P45984-3|MAPK9;nc|ENSG00000050748|P45984-2|MAPK9;nc|ENSG00000107643|P45983-3|MAPK8;nc|ENSG00000107643|P45983-2|MAPK8;nc|ENSG00000050748|P45984-4|MAPK9;ENSG00000050748|ENST00000452135|MAPK9;nc|ENSG00000107643|P45983-4|MAPK8;ENSG00000107643|ENST00000374189|MAPK8	nc|ENSG00000109339|P53779-2|MAPK10	nc|ENSG00000109339|P53779-2|MAPK10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.7679443359375	2	501.783225	1001.5519	-2.6432	-0.0013263	1.2474	0.00062595	-1.3957	-0.00070034	501.78389065041995	49.333	0.56785	46.191	46.043	46.61	-3.1416					16	10	2	0	0	0	0.028476	1	2800	2800		15.642	0	1	45374			56609	2710	46697	46739	61995	61995					0.051182338343210176
THAPVTLVGI	10	Unmodified	_THAPVTLVGI_					0	0	0			REV__ENST00000589958.1_1_19:56853805-56854033:-|nuORF	REV__ENST00000589958.1_1_19:56853805-56854033:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	504.2981262207031	2	504.297842	1006.58113	-1.2162	-0.00061332	0.82605	0.00041658	-0.39013	-0.00019674	504.29821756982153	103.35	3.6196	102.66	102.28	105.9	-0.68459					195	72	4	0	0	0	0.58282	1	9525	9525		44.117	0	1	812500	+		56610	27912	46698	46740	61996	61996					0.07810333339955378
THARFEEKN	9	Unmodified	_THARFEEKN_					0	0	0		ENST00000485881.1_1_3:137599977-137600205:+|nuORF	ENST00000485881.1_1_3:137599977-137600205:+|nuORF	ENST00000485881.1_1_3:137599977-137600205:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.6646728515625	2	566.280712	1130.54687	-0.30819	-0.00017452	-3.2824	-0.0018588	-3.5906	-0.0020333	566.2784686629697	29.06	0.34932	29.06	28.888	29.237	0					14	6	3	0	0	0	0.027462	1	990	990		23.042	3.939	1	84985			56611	12616	46699	46741	61997	61997					-0.013181148189460146
THCRKHYIL	9	Unmodified	_THCRKHYIL_					0	0	0			REV__ENSG00000125812|ENST00000338121|GZF1	REV__ENSG00000125812|ENST00000338121|GZF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.2814331054688	2	585.813667	1169.61278	0.42573	0.0002494	-1.233	-0.00072233	-0.80731	-0.00047293	586.3122727475815	140.81	0.40103	140.81	140.68	141.08	0					9	7	2	0	0	0	0.027462	1	16438	16438		30.504	0	1	13244	+		56612	18747	46700	46742	61998	61998					0.034760028222535766
THDLTNLG	8	Unmodified	_THDLTNLG_					0	0	0			REV__nc|ENSG00000138101|O60941-4|DTNB	REV__nc|ENSG00000138101|O60941-4|DTNB	MULTI-MSMS	OvCa99_classI_Rep5	1	435.7199401855469	2	435.719424	869.424296	0.92392	0.00040257	-3.9843	-0.001736	-3.0604	-0.0013335	435.71765440783844	57.713	1.2965	57.713	57.438	58.734	0					79	30	4	0	0	0	0.66704	1	4848	4848		50.025	2.1089	1	5294500	+		56613	19509	46701	46743	61999	61999					-0.015639515503835355
THEFRKGVK	9	Unmodified	_THEFRKGVK_					0	0	0		tr|A0A7D6ZXQ5|A0A7D6ZXQ5_9CLOTPrecorrin-4C(11)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=cobMPE=3SV=1	tr|A0A7D6ZXQ5|A0A7D6ZXQ5_9CLOTPrecorrin-4C(11)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=cobMPE=3SV=1	tr|A0A7D6ZXQ5|A0A7D6ZXQ5_9CLOTPrecorrin-4C(11)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=cobMPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.3104858398438	2	551.311815	1100.60908	-0.37818	-0.00020849	-1.6559	-0.0009129	-2.0341	-0.0011214	551.3108232441903	143.73	1.3553	142.28	141.89	143.25	-1.4427					66	25	4	0	0	0	0.63422	1	14099	14099		27.882	0	1	191320			56614	35888	46702	46744	62000	62000					0.06279656320043614
THEKYWSI	8	Unmodified	_THEKYWSI_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.2647705078125	2	532.263999	1062.51345	-1.0935	-0.00058203	-3.4941	-0.0018598	-4.5876	-0.0024418	532.2620120383967	143.14	0.80057	141.69	141.46	142.26	-1.4427					25	15	2	0	0	0	0.73205	1	14012	14012		35.618	2.8059	1	29672	+		56615	28942;32737	46703	46745	62001	62001					-0.015311165908542534
THEKYWSI	8	Unmodified	_THEKYWSI_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	532.263999	1062.51345	-2.5039	-0.0013328	-2.1519	-0.0011454	-4.6559	-0.0024782	532.2626932087664	142.18	0.54167	141.96	141.67	142.21	-0.22696	0.16544	0.00040008	NaN	35.618	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32448	+		56616	28942;32737	46703	46745							-0.015311165908542534
THEKYWSI	8	Unmodified	_THEKYWSI_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MATCH	OvCa9_classI_Rep3	3		2	532.263999	1062.51345	-2.3021	-0.0012253	-2.3208	-0.0012353	-4.6229	-0.0024606	532.2625641385937	142.73	0.83893	141.72	141.44	142.28	-1.0038	-0.067247	0.00022032	NaN	35.618	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35426	+		56617	28942;32737	46703	46745							-0.015311165908542534
THEKYWSI	8	Unmodified	_THEKYWSI_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	532.263999	1062.51345	-1.0935	-0.00058203	-3.4941	-0.0018598	-4.5876	-0.0024418	532.2620120383967	143.14	0.80057	141.69	141.46	142.26	-1.4427	-0.098195	-0.0010287	NaN	35.618	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29672	+		56618	28942;32737	46703	46745							-0.015311165908542534
THELETLKP	9	Unmodified	_THELETLKP_					0	0	0			REV__ENST00000553569.1_1_14:90422543-90422971:+|nuORF	REV__ENST00000553569.1_1_14:90422543-90422971:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	534.2929077148438	2	534.290214	1066.56587	2.1067	0.0011256	-1.9626	-0.0010486	0.14414	7.7012E-05	534.2889698879707	123.28	0.87724	122.24	121.99	122.87	-1.0377					35	16	3	0	0	0	0.62352	1	9542	9542		29.15	0	1	71650	+		56619	27515	46704	46746	62002	62002					0.035254217521242026
THEYLLDVDL	10	Unmodified	_THEYLLDVDL_					0	0	0		ENSG00000187510|ENST00000344636|PLEKHG7	ENSG00000187510|ENST00000344636|PLEKHG7	ENSG00000187510|ENST00000344636|PLEKHG7	MULTI-SECPEP	OvCa99_classI_Rep5	1	608.3603515625	2	609.306061	1216.59757	1.7968	0.0010948	-1.0439	-0.00063604	0.75292	0.00045876	609.8087512304903	118.87	0.37957	118.87	118.63	119.01	0					15	7	3	0	0	0	0.026665	1	13633	13633		42.396	0	1	35090			56620	8405	46705	46747	62003	62003					-0.002066302845832979
THFGKLRGAR	10	Unmodified	_THFGKLRGAR_					0	0	0		nc|ENSG00000196338|Q9NZ94-3|NLGN3;nc|ENSG00000196338|Q9NZ94-2|NLGN3;ENSG00000196338|ENST00000358741|NLGN3	nc|ENSG00000196338|Q9NZ94-3|NLGN3	nc|ENSG00000196338|Q9NZ94-3|NLGN3	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.8213500976562	2	571.830706	1141.64686	-0.67741	-0.00038736	-1.4153	-0.00080929	-2.0927	-0.0011967	571.8299426627368	59.785	0.424	59.785	59.573	59.997	0					18	10	2	0	0	0	0.027118	1	5174	5174		13.454	0	1	739750			56621	8590	46706	46748	62004	62004					0.08170167305524956
THFKLPKYRRL	11	Unmodified	_THFKLPKYRRL_					0	0	0		nc|ENSG00000185842|Q0VDD8|DNAH14;nc|ENSG00000185842|Q0VDD8-4|DNAH14;ENSG00000185842|ENST00000682510|DNAH14;nc|ENSG00000185842|Q0VDD8-2|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	nc|ENSG00000185842|Q0VDD8|DNAH14	MULTI-MSMS	OvCa9_classI_Rep3	3	486.95849609375	3	486.961256	1457.86194	-7.2825	-0.0035463	2.5142	0.0012243	-4.7683	-0.002322	486.9623381995862	161.08	3.4384	159.71	158.52	161.96	-1.3692					219	70	4	0	0	0	0.72548	1	13948	13948		9.2118	2.5522	1	133400			56622	15218	46707	46749	62005	62005					0.1513208905043939
THGEVLIW	8	Unmodified	_THGEVLIW_					0	0	0			REV__ENST00000466368.1_1_7:150755543-150755699:+|nuORF	REV__ENST00000466368.1_1_7:150755543-150755699:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.75286865234375	2	477.75581	953.497067	-1.2756	-0.00060944	-3.1871	-0.0015227	-4.4627	-0.0021321	477.75406328346696	119.51	1.0433	118.17	117.83	118.88	-1.3444					27	19	2	0	0	0	0.73288	1	11214	11214		35.201	1.6851	1	81841	+		56623	26185	46708	46750	62006	62006					0.018458022430536403
THGEVLIW	8	Unmodified	_THGEVLIW_					0	0	0			REV__ENST00000466368.1_1_7:150755543-150755699:+|nuORF	REV__ENST00000466368.1_1_7:150755543-150755699:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	477.75581	953.497067	-1.6614	-0.00079376	-2.8641	-0.0013684	-4.5256	-0.0021621	477.75427618534695	118.59	0.84573	118.44	118.08	118.93	-0.14754	0.1714	0.00070048	NaN	35.201	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34482	+		56624	26185	46708	46750							0.018458022430536403
THGEVLIW	8	Unmodified	_THGEVLIW_					0	0	0			REV__ENST00000466368.1_1_7:150755543-150755699:+|nuORF	REV__ENST00000466368.1_1_7:150755543-150755699:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	477.75581	953.497067	1.0095	0.00048231	-5.4217	-0.0025902	-4.4121	-0.0021079	477.75308389033574	119.23	0.64606	118.2	117.93	118.58	-1.0271	-0.06654	-0.0017433	NaN	35.201	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38620	+		56625	26185	46708	46750							0.018458022430536403
THGGKLLPGGM	11	Unmodified	_THGGKLLPGGM_					0	0	0			REV__ENST00000358025.7_1_14:64653275-64655278:+|nuORF	REV__ENST00000358025.7_1_14:64653275-64655278:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	534.2836303710938	2	534.286951	1066.55935	-2.0798	-0.0011112	-3.3925	-0.0018125	-5.4722	-0.0029237	534.2851091761327	143.26	1.286	142.27	141.94	143.23	-0.9903					60	25	3	0	0	0	0.69808	1	11948	11948		30.318	1.1682	1	116190	+		56626	24793	46709	46751	62007	62007					0.02873205319747285
THGTQNII	8	Unmodified	_THGTQNII_					0	0	0			REV__tr|A0A553SPJ2|A0A553SPJ2_NIACIABCtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_26465PE=3SV=1	REV__tr|A0A553SPJ2|A0A553SPJ2_NIACIABCtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_26465PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	441.7149658203125	2	442.235242	882.45593	0.3048	0.00013479	-0.33931	-0.00015005	-0.034512	-1.5263E-05	442.23506026027354	50.31	0.43611	50.31	50.073	50.509	0					15	9	2	0	0	0	0.028476	1	3805	3805		23.042	0	1	414810	+		56627	30541	46710	46752	62008	62008					0.010000412035765294
THGVRMSE	8	Unmodified	_THGVRMSE_					0	0	0		nc|ENSG00000103066|Q8NCC3-2|PLA2G15	nc|ENSG00000103066|Q8NCC3-2|PLA2G15	nc|ENSG00000103066|Q8NCC3-2|PLA2G15	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.719970703125	2	458.718901	915.42325	3.8269	0.0017555	1.4803	0.00067904	5.3072	0.0024345	458.7195234976659	132.32	1.3151	130.82	130.17	131.48	-1.5015					41	25	2	0	0	0	0.73288	1	12754	12754		35.201	6.9464	1	42256			56628	14935	46711	46753	62009	62009					-0.03784489190923068
THHARRRR	8	Unmodified	_THHARRRR_					0	0	0		nc|ENSG00000288675|I0J062|PANO1	nc|ENSG00000288675|I0J062|PANO1	nc|ENSG00000288675|I0J062|PANO1	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3167724609375	2	545.316089	1088.61762	-2.8527	-0.0015556	3.9571	0.0021579	1.1044	0.00060225	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.7549	1	11957	11957		24.203	3.2558	1	337600			56629	15388	46712	46754	62010	62010					0.07686067799886587
THHYLVVPKK	10	Unmodified	_THHYLVVPKK_					0	0	0		ENSG00000111911|ENST00000229633|HINT3	ENSG00000111911|ENST00000229633|HINT3	ENSG00000111911|ENST00000229633|HINT3	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3546142578125	2	611.358765	1220.70298	-1.5159	-0.00092675	-2.9254	-0.0017884	-4.4412	-0.0027152	611.3567832501896	147.85	3.7824	146.41	144.39	148.17	-1.4351					181	75	4	0	0	0	0.7759	1	14478	14478		21.96	1.9631	1	164640			56630	2866	46713	46755	62011	62011					0.10145375422303005
THIATNVACLL	11	Unmodified	_THIATNVACLL_					0	0	0			REV__ENSG00000256574|ENST00000553795|OR13A1	REV__ENSG00000256574|ENST00000553795|OR13A1	MULTI-MSMS	OvCa9_classI_Rep2	2	578.3101196289062	2	578.313166	1154.61178	-3.4092	-0.0019716	-1.5765	-0.00091174	-4.9857	-0.0028833	578.3120607814013	148.81	1.2534	148.59	148.22	149.47	-0.22697					59	24	4	0	0	0	0.71789	1	15048	15048		23.523	0.48021	1	94207	+		56631	23537	46714	46756	62012	62012					0.04065743662704335
THIFRLKG	8	Unmodified	_THIFRLKG_					0	0	0			REV__tr|A0A553SLH0|A0A553SLH0_NIACIDUF4397domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20595PE=4SV=1	REV__tr|A0A553SLH0|A0A553SLH0_NIACIDUF4397domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20595PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	486.2911682128906	2	486.292894	970.571235	-0.28888	-0.00014048	-4.193	-0.002039	-4.4818	-0.0021795	486.2907334904176	46.526	1.9813	43.817	43.349	45.331	-2.7097					83	39	4	0	0	0	0.7043	1	2781	2781		42.474	1.9018	1	653600	+		56632	30224	46715	46757	62013	62013					0.08477190125222478
THIGRVPRSK	10	Unmodified	_THIGRVPRSK_					0	0	0			REV__ENSG00000171560|ENST00000403106|FGA	REV__ENSG00000171560|ENST00000403106|FGA	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8433227539062	2	575.843813	1149.67307	-4.018	-0.0023138	2.8816	0.0016594	-1.1364	-0.0006544	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.71192	1	12362	12362		29.15	2.4566	1	445630	+		56633	21626	46716	46758	62014	62014					0.10422436476983421
THIKEHSFL	9	Unmodified	_THIKEHSFL_					0	0	0			REV__ENSG00000256771|ENST00000589717|ZNF253	REV__ENSG00000256771|ENST00000589717|ZNF253	MULTI-MSMS	OvCa99_classI_Rep5	1	556.2991943359375	2	556.298373	1110.58219	1.4001	0.0007789	-3.4904	-0.0019417	-2.0902	-0.0011628	556.2962468429479	150.2	1.8589	150.2	149.7	151.55	0					101	36	5	0	0	0	0.56189	1	17576	17576		36.447	0.82846	1	1762000	+		56634	23538	46717	46759	62015	62015					0.03132547708855782
THILVEDMV	9	Unmodified	_THILVEDMV_					0	0	0		tr|A0A7D7AF69|A0A7D7AF69_9CLOTSulfiteexporterTauE/SafEfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04860PE=4SV=1	tr|A0A7D7AF69|A0A7D7AF69_9CLOTSulfiteexporterTauE/SafEfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04860PE=4SV=1	tr|A0A7D7AF69|A0A7D7AF69_9CLOTSulfiteexporterTauE/SafEfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04860PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3338012695312	2	528.773342	1055.53213	-0.14834	-7.8438E-05	4.4712	0.0023643	4.3229	0.0022858	528.7749707646366	72.974	0.47115	72.974	72.684	73.155	0					16	11	2	0	0	0	0.027462	1	7093	7093		38.806	8.3025	1	384260			56635	36252	46718	46760	62016	62016					0.00658676988678053
THITAQTAVL	10	Unmodified	_THITAQTAVL_					0	0	0		nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1;nc|ENSG00000158467|Q96HN2-4|AHCYL2;nc|ENSG00000158467|Q96HN2-3|AHCYL2;nc|ENSG00000158467|Q96HN2-2|AHCYL2;ENSG00000158467|ENST00000325006|AHCYL2	nc|ENSG00000168710|O43865-2|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2836303710938	2	527.798206	1053.58186	-0.57361	-0.00030275	3.2605	0.0017209	2.6869	0.0014181	527.7996671622615	51.676	0.32491	51.676	51.504	51.829	0					10	7	2	0	0	0	0.02706	1	4006	4006		23.523	11.887	1	724790			56636	6935	46719	46761	62017	62017					0.05721127988999797
THITTVKGL	9	Unmodified	_THITTVKGL_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OvCa9_classI_Rep2	2	485.28826904296875	2	485.290017	968.565481	0.67971	0.00032986	-3.7324	-0.0018113	-3.0527	-0.0014814	485.2880610480828	30.452	1.281	27.743	27.557	28.838	-2.7097					46	25	3	0	0	0	0.69123	1	858	858		20.947	4.4738	1	148120			56637	5793;36288	46720	46762	62018	62018					0.07994046822898326
THKDTPSSRA	10	Unmodified	_THKDTPSSRA_					0	0	0			REV__nc|ENSG00000157087|Q01814-4|ATP2B2;REV__nc|ENSG00000058668|P23634-5|ATP2B4;REV__nc|ENSG00000067842|Q16720-8|ATP2B3	REV__nc|ENSG00000058668|P23634-5|ATP2B4	MULTI-SECPEP	OvCa9_classI_Rep2	2	549.31396484375	2	550.278169	1098.54179	-1.8844	-0.0010369	1.5823	0.00087073	-0.30201	-0.00016619	550.27895991805	37.154	0.64076	34.444	34.238	34.879	-2.7097					16	12	2	0	0	0	0.027001	1	1655	1655		42.864	16.068	1	16151	+		56638	20511;16729;16842	46721	46763	62019	62019					-0.003544186815588546
THKERIKR	8	Unmodified	_THKERIKR_					0	0	0			REV__tr|A0A7D7A6U7|A0A7D7A6U7_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=vanRPE=4SV=1	REV__tr|A0A7D7A6U7|A0A7D7A6U7_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=vanRPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	533.3403930664062	2	534.325257	1066.63596	-5.3882	-0.0028791	-3.2249	-0.0017231	-8.6131	-0.0046022	534.3234720853363	156.66	0.72101	156.43	156.06	156.78	-0.22696					33	16	3	0	0	0	0.028476	1	15923	15923		25.45	13.243	1	35783	+		56639	32665	46722	46764	62020	62020					0.10530764931218073
THLALTVKT	9	Unmodified	_THLALTVKT_					0	0	0		nc|ENSG00000158987|Q8TEU7-2|RAPGEF6;nc|ENSG00000158987|Q8TEU7-5|RAPGEF6;nc|ENSG00000158987|Q8TEU7-3|RAPGEF6;ENSG00000158987|ENST00000509018|RAPGEF6;nc|ENSG00000158987|Q8TEU7-4|RAPGEF6;nc|ENSG00000158987|Q8TEU7-6|RAPGEF6;ENST00000514179.5_1_5:130808426-130834192:-|nuORF	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	nc|ENSG00000158987|Q8TEU7-2|RAPGEF6	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.7591247558594	2	492.297842	982.581131	-0.72819	-0.00035849	-1.0874	-0.00053534	-1.8156	-0.00089383	492.2979073733386	29.062	0.34799	29.062	28.838	29.186	0					8	6	2	0	0	0	0.027462	1	1008	1008		10.265	0	1	18859			56640	5982	46723	46765	62021	62021					0.08914333339930636
THLDLTCHL	9	Carbamidomethyl (C)	_THLDLTC(Carbamidomethyl (C))HL_	THLDLTC(1)HL		THLDLTC(58)HL		0	1	0			REV__ENST00000373316.4_1_X:77381448-77381550:+|nuORF	REV__ENST00000373316.4_1_X:77381448-77381550:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	555.2733764648438	2	555.274041	1108.53353	0.9003	0.00049991	-2.0618	-0.0011449	-1.1615	-0.00064497	555.2727065968804	158.92	0.916	158.92	158.61	159.52	0					42	18	3	0	0	0	0.34496	1	18616	18616		57.811	10.154	1	478030	+		56641	25037	46724	46766	62022	62022	305				-0.016396889225688938
THLDPGGL	8	Unmodified	_THLDPGGL_					0	0	0		nc|ENSG00000157168|Q02297-10|NRG1	nc|ENSG00000157168|Q02297-10|NRG1	nc|ENSG00000157168|Q02297-10|NRG1	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.5754699707031	2	405.211235	808.407917	0.60971	0.00024706	2.3669	0.00095909	2.9766	0.0012062	405.2121490185244	68.224	0.63337	68.224	67.723	68.356	0					20	15	2	0	0	0	0.028476	1	6426	6426		20.482	0	1	175940			56642	15115	46725	46767	62023	62023					-0.0039503271646026406
THLESLHLE	9	Unmodified	_THLESLHLE_					0	0	0		TPBG|p.M385Tfs*28|1|0.03|ENSG00000146242|chr6:82366114-82366115|-/CC|frameshift_variant;ENSG00000146242|ENST00000369750|TPBG	TPBG|p.M385Tfs*28|1|0.03|ENSG00000146242|chr6:82366114-82366115|-/CC|frameshift_variant	TPBG|p.M385Tfs*28|1|0.03|ENSG00000146242|chr6:82366114-82366115|-/CC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.3070068359375	2	539.780013	1077.54547	0.38129	0.00020581	-1.0964	-0.00059183	-0.71515	-0.00038602	539.7792951670143	67.279	0.43369	67.279	67.055	67.489	0					25	10	3	0	0	0	0.027462	1	6264	6264		30.504	0	1	1249500			56643	5276	46726	46768	62024	62024					0.009802510922781948
THLFLNIIYA	10	Unmodified	_THLFLNIIYA_					0	0	0			REV__L1MC1_dup7132|chr8:144750012-144750846:-|1.0695587535362288|0.4006023584430365|1.42|429.0|48|3|anti-sense	REV__L1MC1_dup7132|chr8:144750012-144750846:-|1.0695587535362288|0.4006023584430365|1.42|429.0|48|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	402.2414245605469	3	402.229008	1203.66519	2.7478	0.0011053	2.8699	0.0011544	5.6177	0.0022596	402.230008427839	34.026	0.29821	31.238	31.101	31.399	-2.7881					9	5	2	0	0	0	0.027228	1	965	965		11.097	0	1	8261.7	+		56644	28422	46727	46769	62025	62025					0.07150864436857773
THLGITGVILL	11	Unmodified	_THLGITGVILL_					0	0	0		ENST00000471410.5_1_X:38422267-38546918:+|nuORF	ENST00000471410.5_1_X:38422267-38546918:+|nuORF	ENST00000471410.5_1_X:38422267-38546918:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	568.8538208007812	2	568.855524	1135.69649	-5.375	-0.0030576	2.0179	0.0011479	-3.3571	-0.0019097	568.8565433281535	160.72	1.3933	160.5	160.18	161.57	-0.22696					89	27	5	0	0	0	0.56722	1	16365	16365		47.657	6.2307	1	747650			56645	12381	46728	46770	62026	62026					0.1340743747095985
THLKQQPIWH	10	Unmodified	_THLKQQPIWH_					0	0	0		nc|ENSG00000135709|O60268-3|KIAA0513;ENSG00000135709|ENST00000683363|KIAA0513	nc|ENSG00000135709|O60268-3|KIAA0513	nc|ENSG00000135709|O60268-3|KIAA0513	MULTI-MSMS	OvCa9_classI_Rep2	2	644.348876953125	2	644.351471	1286.68839	-5.2957	-0.0034123	2.5601	0.0016496	-2.7356	-0.0017627	644.3530551515443	156.2	0.85168	155.97	155.64	156.49	-0.22696					67	24	4	0	0	0	0.79917	1	15915	15915		19.104	4.9664	1	86486			56646	4405	46729	46771	62027	62027					0.056513032741804636
THLLLNPLSV	10	Unmodified	_THLLLNPLSV_					0	0	0			REV__ENST00000375771.5_2_1:16111194-16111311:+|nuORF	REV__ENST00000375771.5_2_1:16111194-16111311:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8298950195312	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.79213	1	14372	14372		19.997	1.6724	1	245610	+		56647	25088	46730	46772	62028	62028					0.10094577919790026
THLLLPKELS	10	Unmodified	_THLLLPKELS_					0	0	0			REV__ENSG00000196290|ENST00000409020|NIF3L1	REV__ENSG00000196290|ENST00000409020|NIF3L1	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8434448242188	2	575.845156	1149.67576	-3.1773	-0.0018296	-0.077675	-4.4729E-05	-3.255	-0.0018744	575.8447773729116	141.87	3.8997	140.86	138.96	142.86	-1.0106					243	78	6	0	0	0	0.72319	1	11762	11762		27.882	4.3595	1	129610	+		56648	22808	46731	46773	62029	62029					0.10690847091291289
THLLYARW	8	Unmodified	_THLLYARW_					0	0	0			REV__nc|ENSG00000159753|Q6F5E8-2|CARMIL2	REV__nc|ENSG00000159753|Q6F5E8-2|CARMIL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2510375976562	2	530.290351	1058.56615	-0.062469	-3.3127E-05	2.3955	0.0012703	2.333	0.0012372	530.7928132243972	30.675	0.59273	30.675	30.483	31.076	0					36	11	6	0	0	0	0.028476	1	1207	1207		20.482	10.297	1	109650	+		56649	20626	46732	46774	62030	62030					0.03920886262608292
THLPAELVPL	10	Unmodified	_THLPAELVPL_					0	0	0			REV__ENST00000330292.4_17:80208760-80208973:+|nuORF	REV__ENST00000330292.4_17:80208760-80208973:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	545.31689453125	2	545.318774	1088.623	-2.8527	-0.0015556	-0.96726	-0.00052747	-3.8199	-0.0020831	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.58282	1	11873	11873		44.117	8.4985	1	337600	+		56650	24524	46733	46775	62031	62031					0.08222889028479585
THNGRLVIKLD	11	Unmodified	_THNGRLVIKLD_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3689575195312	2	633.369861	1264.72517	-3.894	-0.0024663	2.7981	0.0017723	-1.0959	-0.00069408	633.3715080583703	149.82	2.9263	149.6	148.42	151.35	-0.22696					170	58	4	0	0	0	0.69808	1	15209	15209		30.318	2.2362	1	116220	+		56651	23199	46734	46776	62032	62032					0.1033955510006308
THNGRLVIKLD	11	Unmodified	_THNGRLVIKLD_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	OvCa9_classI_Rep2	2	633.369384765625	2	633.369861	1264.72517	-4.5141	-0.0028591	3.4388	0.002178	-1.0753	-0.00068108	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.69808	2	15499	15475;15499		30.318	3.8787	1	369460	+		56652	23199	46734	46776	62033;62034	62034					0.1033955510006308
THNGRLVIKLD	11	Unmodified	_THNGRLVIKLD_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3687133789062	2	633.369861	1264.72517	-4.1446	-0.0026251	2.9938	0.0018962	-1.1508	-0.00072888	633.3716506579397	149.94	3.0119	148.99	147.85	150.86	-0.9512					218	59	5	0	0	0	0.72324	1	12674	12674		21.686	4.9684	1	281260	+		56653	23199	46734	46776	62035	62035					0.1033955510006308
THNGRLVIKLD	11	Unmodified	_THNGRLVIKLD_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3699340820312	2	633.369861	1264.72517	-4.8824	-0.0030923	3.9881	0.002526	-0.89421	-0.00056637	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.69808	2	13074	12978;13074		30.318	0.70912	1	765700	+		56654	23199	46734	46776	62036;62037	62037					0.1033955510006308
THNGRLVIKLD	11	Unmodified	_THNGRLVIKLD_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.3677978515625	2	633.369861	1264.72517	-2.6571	-0.001683	1.5103	0.00095658	-1.1468	-0.00072637	633.3706685096566	150.42	2.9234	148.98	147.78	150.7	-1.4344					195	63	4	0	0	0	0.7046	1	14854	14854		28.081	2.5074	1	147740	+		56655	23199	46734	46776	62038	62038					0.1033955510006308
THNGRLVIKLD	11	Unmodified	_THNGRLVIKLD_					0	0	0			REV__ENSG00000205038|ENST00000378402|PKHD1L1	REV__ENSG00000205038|ENST00000378402|PKHD1L1	MSMS	OvCa9_classI_Rep4_	4	633.3695678710938	2	633.369861	1264.72517	NaN	NaN	NaN	NaN	NaN	NaN	NaN	154.51	1	153.05	152.55	153.55	-1.4516								0	0	0	0.19474	1	15294	15294		17.468	0.75062	1		+		56656	23199	46734	46776	62039	62039					0.1033955510006308
THNIVLDLIL	10	Unmodified	_THNIVLDLIL_					0	0	0			REV__tr|A0A553SGI7|A0A553SGI7_NIACIAlpha-amylaseOS=NialliacirculansOX=1397GN=CEQ21_10965PE=3SV=1	REV__tr|A0A553SGI7|A0A553SGI7_NIACIAlpha-amylaseOS=NialliacirculansOX=1397GN=CEQ21_10965PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8428955078125	2	575.845156	1149.67576	-2.8608	-0.0016474	-0.58729	-0.00033819	-3.4481	-0.0019856	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.79917	1	14768	14768		19.104	0	1	356230	+		56657	29705	46735	46777	62040	62040					0.10690847091291289
THNLRSTEVV	10	Unmodified	_THNLRSTEVV_					0	0	0			REV__nc|ENSG00000162782|Q8NAT2|TDRD5	REV__nc|ENSG00000162782|Q8NAT2|TDRD5	MULTI-MSMS	OvCa99_classI_Rep5	1	578.3123168945312	2	578.309469	1154.60439	0.58112	0.00033607	3.0509	0.0017644	3.632	0.0021004	578.3111486146285	153.37	2.6295	153.37	152.59	155.22	0					107	54	5	0	0	0	0.5675	1	17970	17970		45.972	4.5456	1	2961600	+		56658	20779	46736	46778	62041	62041					0.033267273866158575
THNLRSTEVV	10	Unmodified	_THNLRSTEVV_					0	0	0			REV__nc|ENSG00000162782|Q8NAT2|TDRD5	REV__nc|ENSG00000162782|Q8NAT2|TDRD5	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	578.309469	1154.60439	0.58112	0.00033607	3.0509	0.0017644	3.632	0.0021004	578.3111486146285	153.37	2.6295	153.37	152.59	155.22	0	0	0	NaN	45.972	107	54	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2961600	+		56659	20779	46736	46778							0.033267273866158575
THNSELARAI	10	Unmodified	_THNSELARAI_					0	0	0			REV__ENSG00000186648|ENST00000342740|CARMIL3	REV__ENSG00000186648|ENST00000342740|CARMIL3	MULTI-MSMS	OvCa99_classI_Rep5	1	556.2976684570312	2	556.296362	1110.57817	0.76979	0.00042823	1.0079	0.00056069	1.7777	0.00098892	556.2966526456938	160.9	2.3694	160.9	159.86	162.23	0					95	46	3	0	0	0	0.57535	1	18838	18838		45.022	9.4039	1	122560	+		56660	22606	46737	46779	62042	62042					0.027304582151373324
THNVAAMEVAL	11	Unmodified	_THNVAAMEVAL_					0	0	0			REV__nc|ENSG00000147421|Q6NT76-3|HMBOX1	REV__nc|ENSG00000147421|Q6NT76-3|HMBOX1	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.2886352539062	2	578.294973	1154.57539	-7.0214	-0.0040605	-2.2037	-0.0012744	-9.2252	-0.0053349	578.2935937226971	160.38	4.1596	158.77	158.05	162.21	-1.6101					391	105	5	0	0	0	0.68021	1	16058	16058		36.447	1.2947	1	1912500	+		56661	20063	46738	46780	62043	62043					0.004288667659693601
THPEESMYKRL	11	Unmodified	_THPEESMYKRL_					0	0	0		ENSG00000167291|ENST00000310924|TBC1D16;nc|ENSG00000167291|Q8TBP0-3|TBC1D16;nc|ENSG00000167291|Q8TBP0-4|TBC1D16;nc|ENSG00000167291|Q8TBP0-2|TBC1D16	ENSG00000167291|ENST00000310924|TBC1D16	ENSG00000167291|ENST00000310924|TBC1D16	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.2783203125	3	464.230971	1389.67108	-0.30179	-0.0001401	0.33531	0.00015566	0.03352	1.5561E-05	464.2310505994631	76.095	0.75698	73.156	72.888	73.645	-2.9389					34	15	4	0	0	0	0.025445	1	6021	6021		35.178	4.6094	1	97380			56662	6777	46739	46781	62044	62044					-0.008164051138010109
THPHEQKVQPT	11	Unmodified	_THPHEQKVQPT_					0	0	0			REV__nc|ENSG00000138795|Q9UJU2-4|LEF1	REV__nc|ENSG00000138795|Q9UJU2-4|LEF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.2380676269531	3	434.558076	1300.6524	0.75487	0.00032803	1.4699	0.00063876	2.2248	0.00096679	434.5584393668929	38.8	0.49579	35.873	35.7	36.196	-2.9264					13	9	2	0	0	0	0.026033	1	1565	1565		17.167	0	1	15726	+		56663	19574	46740	46782	62045	62045					0.014098013066586645
THPNKEMVAL	10	Oxidation (M)	_THPNKEM(Oxidation (M))VAL_		THPNKEM(1)VAL		THPNKEM(46)VAL	0	0	1			REV__nc|ENSG00000102053|Q5HYM0-2|ZC3H12B	REV__nc|ENSG00000102053|Q5HYM0-2|ZC3H12B	MULTI-MSMS	OvCa9_classI_Rep3	3	578.28955078125	2	578.294973	1154.57539	-7.6021	-0.0043963	-1.6299	-0.00094256	-9.232	-0.0053388	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.5675	1	14062	14062		45.972	8.1607	1	1429200	+		56664	17535	46741	46783	62046	62046		410			0.004288667659693601
THPPGHEVRL	10	Unmodified	_THPPGHEVRL_					0	0	0			REV__ENSG00000113504|ENST00000264930|SLC12A7	REV__ENSG00000113504|ENST00000264930|SLC12A7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	571.3283081054688	2	571.806897	1141.59924	0.1554	8.8858E-05	-1.0581	-0.00060502	-0.90269	-0.00051616	571.8063686805713	142.25	1.2925	140.79	140.24	141.53	-1.4627					35	24	2	0	0	0	0.026734	1	13898	13898		56.721	22.549	1	33296	+		56665	18152	46742	46784	62047	62047					0.034104683146551906
THPPGHEVRL	10	Unmodified	_THPPGHEVRL_					0	0	0			REV__ENSG00000113504|ENST00000264930|SLC12A7	REV__ENSG00000113504|ENST00000264930|SLC12A7	MULTI-MATCH	OvCa9_classI_Rep2	2		2	571.806897	1141.59924	-2.0335	-0.0011628	0.94038	0.00053772	-1.0931	-0.00062507	572.3091128713444	140.71	0.4415	140.48	140.33	140.78	-0.22696	-0.19249	0.00076564	NaN	56.721	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7386.6	+		56666	18152	46742	46784							0.034104683146551906
THPPGHEVRL	10	Unmodified	_THPPGHEVRL_					0	0	0			REV__ENSG00000113504|ENST00000264930|SLC12A7	REV__ENSG00000113504|ENST00000264930|SLC12A7	MULTI-MATCH	OvCa9_classI_Rep3	3		2	571.806897	1141.59924	-2.8177	-0.0016112	1.8234	0.0010426	-0.99434	-0.00056857	571.807962825848	141.76	0.79335	140.75	140.39	141.18	-1.0106	0.079256	0.0017754	NaN	56.721	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22566	+		56667	18152	46742	46784							0.034104683146551906
THPPLHPCI	9	Unmodified	_THPPLHPCI_					0	0	0			REV__ENST00000395496.5_1_6:32136983-32137049:-|nuORF	REV__ENST00000395496.5_1_6:32136983-32137049:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.794189453125	2	507.763112	1013.51167	-2.167	-0.0011003	-2.2747	-0.001155	-4.4417	-0.0022554	507.76184948128616	49.177	0.9874	46.035	45.675	46.663	-3.1416					43	18	3	0	0	0	0.027462	1	2722	2722		24.203	0	1	126000	+		56668	25317	46743	46785	62048	62048					0.005455511195350482
THPRIDPDV	9	Unmodified	_THPRIDPDV_					0	0	0		ENSG00000182601|ENST00000331351|HS3ST4	ENSG00000182601|ENST00000331351|HS3ST4	ENSG00000182601|ENST00000331351|HS3ST4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.2803344726562	2	525.272355	1048.53016	-0.99562	-0.00052297	0.75515	0.00039666	-0.24048	-0.00012632	525.2727145929526	62.975	1.1074	59.502	59.145	60.252	-3.4735					55	22	4	0	0	0	0.027453	1	4432	4432		30.318	0	1	476580			56669	8012	46744	46786	62049	62049					0.007833842950731196
THPRLPGH	8	Unmodified	_THPRLPGH_					0	0	0		ENST00000434316.6_1_13:114193706-114203864:+|nuORF	ENST00000434316.6_1_13:114193706-114203864:+|nuORF	ENST00000434316.6_1_13:114193706-114203864:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	458.7456970214844	2	457.751393	913.488233	1.5908	0.0007282	-3.097	-0.0014177	-1.5062	-0.00068945	457.7498652662749	42.651	1.1371	39.942	39.621	40.758	-2.7097					35	22	2	0	0	0	0.028476	1	2338	2338		19.36	1.995	1	97367			56670	11838	46745	46787	62050	62050					0.028028733972291775
THPVTLAGKL	10	Unmodified	_THPVTLAGKL_					0	0	0		ENSG00000170745|ENST00000304101|KCNS3	ENSG00000170745|ENST00000304101|KCNS3	ENSG00000170745|ENST00000304101|KCNS3	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.80810546875	2	518.811116	1035.60768	-0.9287	-0.00048182	-0.27481	-0.00014257	-1.2035	-0.00062439	518.81101868621	89.013	3.7261	86.41	85.882	89.609	-2.6027					155	73	4	0	0	0	0.49558	1	7683	7683		54.776	1.4249	1	7911300			56671	7130	46746	46788	62051	62051					0.09130022231283874
THPYVISL	8	Unmodified	_THPYVISL_					0	0	0		sp|P16741|UL121_HCMVAMembraneproteinUL121OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL121PE=3SV=1;sp|F5HD27|UL121_HCMVMMembraneproteinUL121OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL121PE=3SV=1	sp|P16741|UL121_HCMVAMembraneproteinUL121OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL121PE=3SV=1	sp|P16741|UL121_HCMVAMembraneproteinUL121OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL121PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.76385498046875	2	465.258185	928.501818	0.21694	0.00010093	-2.7537	-0.0012812	-2.5368	-0.0011803	465.2567613289237	66.722	0.59695	64.026	63.617	64.213	-2.6958					19	11	2	0	0	0	0.028476	1	5202	5202		31.955	0	1	62127			56672	32860	46747	46789	62052	62052					0.03470686385821864
THQKKAIFK	9	Unmodified	_THQKKAIFK_					0	0	0			REV__tr|A0A7D6VUJ5|A0A7D6VUJ5_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_20835PE=4SV=1	REV__tr|A0A7D6VUJ5|A0A7D6VUJ5_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_20835PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	550.8319091796875	2	550.832383	1099.65021	0.7561	0.00041648	-0.8481	-0.00046716	-0.092004	-5.0679E-05	550.831810295029	31.273	0.88647	28.563	28.347	29.233	-2.7097					37	17	3	0	0	0	0.62352	1	955	955		29.15	0	1	181500	+		56673	31685	46748	46790	62053	62053					0.10437417359503343
THQLLLTGRR	10	Unmodified	_THQLLLTGRR_					0	0	0			REV__ENST00000579053.5_1_18:691132-706776:-|nuORF	REV__ENST00000579053.5_1_18:691132-706776:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8567504882812	2	597.856921	1193.69929	-2.7036	-0.0016164	1.7084	0.0010214	-0.99524	-0.00059501	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.77039	1	12801	12801		22.58	0.61977	1	591030	+		56674	27808	46749	46791	62054	62054					0.11018705648439209
THQPTNLVL	9	Unmodified	_THQPTNLVL_					0	0	0		nc|ENSG00000151617|P25101-2|EDNRA;nc|ENSG00000151617|P25101-3|EDNRA;nc|ENSG00000151617|P25101-4|EDNRA;ENSG00000151617|ENST00000651419|EDNRA	nc|ENSG00000151617|P25101-2|EDNRA	nc|ENSG00000151617|P25101-2|EDNRA	MULTI-MSMS	OvCa9_classI_Rep2	2	511.7869873046875	2	511.785099	1021.55564	-0.34876	-0.00017849	4.273	0.0021869	3.9243	0.0020084	511.7870588089586	114.99	2.1752	114.87	114.5	116.68	-0.11777					99	43	4	0	0	0	0.46356	1	10974	10974		45.972	3.5761	1	358000			56675	5568	46750	46792	62055	62055					0.04572858817505221
THRKCEAKVT	10	Unmodified	_THRKCEAKVT_					0	0	0		TNS2|p.P1240Lfs*67|1|0.09|ENSG00000111077|chr12:53062426-53062427|-/T|frameshift_variant;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2;nc|ENSG00000111077|Q63HR2-2|TNS2;ENST00000552403.5_1_12:53443879-53447323:+|nuORF;ENST00000549498.5_1_12:53442984-53449630:+|nuORF	TNS2|p.P1240Lfs*67|1|0.09|ENSG00000111077|chr12:53062426-53062427|-/T|frameshift_variant	TNS2|p.P1240Lfs*67|1|0.09|ENSG00000111077|chr12:53062426-53062427|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	586.859375	2	586.813864	1171.61318	3.4815	0.002043	-4.3517	-0.0025536	-0.87017	-0.00051063	586.8112777592216	25.122	0.28889	22.413	22.29	22.579	-2.7097					8	5	2	0	0	0	0.027431	1	204	204		14.137	2.6261	1	16522			56676	2809	46751	46793	62056	62056					0.03423377751437329
THRRLHAK	8	Unmodified	_THRRLHAK_					0	0	0			REV__ENSG00000163884|ENST00000296233|KLF15	REV__ENSG00000163884|ENST00000296233|KLF15	MULTI-MSMS	OvCa9_classI_Rep2	2	509.80426025390625	2	509.804491	1017.59443	-0.41042	-0.00020923	-1.0032	-0.00051141	-1.4136	-0.00072065	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.74679	1	13637	13637		28.254	6.2944	1	150140	+		56677	20906	46752	46794	62057	62057					0.08633628962559214
THRSFWDEVL	10	Unmodified	_THRSFWDEVL_					0	0	0		ENSG00000008323|ENST00000684764|PLEKHG6;nc|ENSG00000008323|Q3KR16-2|PLEKHG6	ENSG00000008323|ENST00000684764|PLEKHG6	ENSG00000008323|ENST00000684764|PLEKHG6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	430.92352294921875	3	430.547288	1288.62004	0.7074	0.00030457	-4.2029	-0.0018096	-3.4955	-0.001505	430.54526243862927	58.061	0.65548	54.716	54.393	55.049	-3.3449					22	12	3	0	0	0	0.026867	1	3790	3790		16.007	0	1	23179			56678	918	46753	46795	62058	62058					-0.012729860963418105
THRTIVVAPR	10	Unmodified	_THRTIVVAPR_					0	0	0		sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1;sp|F5HFA5|UL117_HCMVMProteinUL117OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL117PE=3SV=1	sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	sp|P16770|UL117_HCMVAProteinUL117OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL117PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.345947265625	2	575.346189	1148.67783	-4.8723	-0.0028032	3.718	0.0021391	-1.1543	-0.00066411	575.3482857575835	154.87	1.1278	154.64	154.34	155.47	-0.22696					59	30	3	0	0	0	0.79917	1	15767	15767		19.104	3.4617	1	84487			56679	32872	46754	46796	62059	62059					0.10943320619753649
THRTTKVKKSP	11	Unmodified	_THRTTKVKKSP_					0	0	0		ENSG00000176681|ENST00000320254|LRRC37A	ENSG00000176681|ENST00000320254|LRRC37A	ENSG00000176681|ENST00000320254|LRRC37A	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8818359375	2	641.883136	1281.75172	-4.6434	-0.0029805	3.7859	0.0024301	-0.85746	-0.00055039	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.71048	1	15557	15557		26.063	5.2262	1	543390			56680	7621	46755	46797	62060	62060					0.12211243991418996
THRTTKVKKSP	11	Unmodified	_THRTTKVKKSP_					0	0	0		ENSG00000176681|ENST00000320254|LRRC37A	ENSG00000176681|ENST00000320254|LRRC37A	ENSG00000176681|ENST00000320254|LRRC37A	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8822021484375	2	641.883136	1281.75172	-4.605	-0.0029559	3.2611	0.0020933	-1.3439	-0.00086262	641.8852528126143	150.24	3.761	149.29	147.05	150.81	-0.95119					231	74	4	0	0	0	0.7046	1	12722	12722		28.081	2.5074	1	246170			56681	7621	46755	46797	62061	62061					0.12211243991418996
THRTTKVKKSP	11	Unmodified	_THRTTKVKKSP_					0	0	0		ENSG00000176681|ENST00000320254|LRRC37A	ENSG00000176681|ENST00000320254|LRRC37A	ENSG00000176681|ENST00000320254|LRRC37A	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8818359375	2	641.883136	1281.75172	-5.3554	-0.0034376	4.4876	0.0028805	-0.86781	-0.00055703	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.68391	1	13082	13082		35.178	8.1309	1	804890			56682	7621	46755	46797	62062	62062					0.12211243991418996
THRTTKVKKSP	11	Unmodified	_THRTTKVKKSP_					0	0	0		ENSG00000176681|ENST00000320254|LRRC37A	ENSG00000176681|ENST00000320254|LRRC37A	ENSG00000176681|ENST00000320254|LRRC37A	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8824462890625	2	641.883136	1281.75172	-2.5182	-0.0016164	1.1749	0.00075413	-1.3433	-0.00086223	641.8839546837315	150.47	2.9704	149.03	147.78	150.75	-1.4344					235	64	4	0	0	0	0.71048	1	14815	14815		26.063	8.5954	1	344900			56683	7621	46755	46797	62063	62063					0.12211243991418996
THRTTKVKKSP	11	Unmodified	_THRTTKVKKSP_					0	0	0		ENSG00000176681|ENST00000320254|LRRC37A	ENSG00000176681|ENST00000320254|LRRC37A	ENSG00000176681|ENST00000320254|LRRC37A	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8837280273438	2	641.883136	1281.75172	-3.6311	-0.0023307	2.7968	0.0017952	-0.8343	-0.00053552	641.8847801872174	153.39	4.0845	151.94	150.68	154.77	-1.4516					420	106	6	0	0	0	0.7046	1	15267	15267		28.081	0.19925	1	809780			56684	7621	46755	46797	62064	62064					0.12211243991418996
THRVFHRRL	9	Unmodified	_THRVFHRRL_					0	0	0			REV__FIZ1|p.A43V|1|0.84|ENSG00000179943|chr19:55597738-55597738|G/A|missense_variant	REV__FIZ1|p.A43V|1|0.84|ENSG00000179943|chr19:55597738-55597738|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3560791015625	2	611.357422	1220.70029	-3.1571	-0.0019301	0.97866	0.00059831	-2.1785	-0.0013318	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.63422	1	12798	12798		27.882	3.3631	1	666990	+		56685	28136	46756	46798	62065	62065					0.09876964808040611
THRVRSVVQL	10	Unmodified	_THRVRSVVQL_					0	0	0			REV__ENST00000546413.1_1_12:100558666-100558768:-|nuORF	REV__ENST00000546413.1_1_12:100558666-100558768:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8555908203125	2	597.856921	1193.69929	-2.7036	-0.0016164	1.7084	0.0010214	-0.99524	-0.00059501	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.5675	2	12485	12402;12485		45.972	10.354	1	591030	+		56686	27419	46757	46799	62066;62067	62067					0.11018705648461946
THRVRSVVQL	10	Unmodified	_THRVRSVVQL_					0	0	0			REV__ENST00000546413.1_1_12:100558666-100558768:-|nuORF	REV__ENST00000546413.1_1_12:100558666-100558768:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8551025390625	2	597.856921	1193.69929	-1.5377	-0.00091935	0.67572	0.00040398	-0.86202	-0.00051536	597.8570606153338	148.28	4.8676	146.85	145.38	150.25	-1.435					291	102	5	0	0	0	0.61634	1	14546	14546		40.058	0	1	767860	+		56687	27419	46757	46799	62068	62068					0.11018705648461946
THRVRSVVQL	10	Unmodified	_THRVRSVVQL_					0	0	0			REV__ENST00000546413.1_1_12:100558666-100558768:-|nuORF	REV__ENST00000546413.1_1_12:100558666-100558768:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	597.8560791015625	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.11	1	147.68	147.18	148.18	-1.4344								0	0	0	0.14319	1	14702	14702		35.152	4.8343	1		+		56688	27419	46757	46799	62069	62069					0.11018705648461946
THRYRKIWKKA	11	Unmodified	_THRYRKIWKKA_					0	0	0		ENST00000355621.7_1_7:129471988-129472078:-|nuORF	ENST00000355621.7_1_7:129471988-129472078:-|nuORF	ENST00000355621.7_1_7:129471988-129472078:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	495.9576416015625	3	496.296638	1485.86809	-4.8301	-0.0023972	-2.115	-0.0010497	-6.9451	-0.0034469	496.29554774169276	159.79	1.9	159.57	158.13	160.03	-0.22696					46	39	2	0	0	0	0.026497	1	16274	16274		9.6461	4.2332	1	24150			56689	10680	46758	46800	62070	62070					0.14458607281972036
THSHKLFKKL	10	Unmodified	_THSHKLFKKL_					0	0	0		nc|ENSG00000021461|Q9HB55-4|CYP3A43;CYP3A43|p.V394Sfs*4|1|0.05|ENSG00000021461|chr7:99861764-99861765|-/CTCTGCTG|frameshift_variant;CYP3A43|p.V394Yfs*7|1|0.04|ENSG00000021461|chr7:99861765-99861766|-/TATTGGCTGGACTCGCT|frameshift_variant;nc|ENSG00000021461|Q9HB55-3|CYP3A43;ENSG00000021461|ENST00000354829|CYP3A43;nc|ENSG00000021461|Q9HB55-2|CYP3A43;nc|ENSG00000021461|Q9HB55-6|CYP3A43	nc|ENSG00000021461|Q9HB55-4|CYP3A43	nc|ENSG00000021461|Q9HB55-4|CYP3A43	MULTI-MSMS	OvCa9_classI_Rep2	2	619.86962890625	2	619.87204	1237.72953	-3.8587	-0.0023919	-0.31006	-0.00019219	-4.1687	-0.0025841	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.66721	2	15393	15306;15393		34.173	11.13	1	492670			56690	702	46759	46801	62071;62072	62072					0.1201706431365892
THSHKLFKKL	10	Unmodified	_THSHKLFKKL_					0	0	0		nc|ENSG00000021461|Q9HB55-4|CYP3A43;CYP3A43|p.V394Sfs*4|1|0.05|ENSG00000021461|chr7:99861764-99861765|-/CTCTGCTG|frameshift_variant;CYP3A43|p.V394Yfs*7|1|0.04|ENSG00000021461|chr7:99861765-99861766|-/TATTGGCTGGACTCGCT|frameshift_variant;nc|ENSG00000021461|Q9HB55-3|CYP3A43;ENSG00000021461|ENST00000354829|CYP3A43;nc|ENSG00000021461|Q9HB55-2|CYP3A43;nc|ENSG00000021461|Q9HB55-6|CYP3A43	nc|ENSG00000021461|Q9HB55-4|CYP3A43	nc|ENSG00000021461|Q9HB55-4|CYP3A43	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8687133789062	2	619.87204	1237.72953	-3.1194	-0.0019336	-1.2014	-0.00074472	-4.3208	-0.0026783	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.49558	3	14964	14964;15011;15081		54.776	18.33	1	806750			56691	702	46759	46801	62073;62074;62075	62073					0.1201706431365892
THSLLRRIAQ	10	Unmodified	_THSLLRRIAQ_					0	0	0		ENSG00000105278|ENST00000262961|ZFR2	ENSG00000105278|ENST00000262961|ZFR2	ENSG00000105278|ENST00000262961|ZFR2	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8563232421875	2	597.856921	1193.69929	-0.38237	-0.0002286	-0.55263	-0.00033039	-0.935	-0.00055899	597.8564103488146	145.14	4.0194	143.71	141.51	145.53	-1.4357					229	77	4	0	0	0	0.6104	1	14265	14265		40.778	3.6191	1	217250			56692	2437	46760	46802	62076	62076					0.11018705648461946
THSPKELIIL	10	Unmodified	_THSPKELIIL_					0	0	0		tr|A0A553SKU9|A0A553SKU9_NIACIAminopeptidasePfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_19425PE=4SV=1	tr|A0A553SKU9|A0A553SKU9_NIACIAminopeptidasePfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_19425PE=4SV=1	tr|A0A553SKU9|A0A553SKU9_NIACIAminopeptidasePfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_19425PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8438720703125	2	575.845156	1149.67576	-2.1491	-0.0012375	-1.4619	-0.00084184	-3.611	-0.0020794	575.8441928035448	141.47	4.0925	141.24	139.21	143.3	-0.22696					166	82	3	0	0	0	0.74374	1	14158	14158		25.574	1.0549	1	100260			56693	33656	46761	46803	62077	62077					0.10690847091314026
THSRSSLHN	9	Unmodified	_THSRSSLHN_					0	0	0			REV__ENSG00000166813|ENST00000394412|KIF7	REV__ENSG00000166813|ENST00000394412|KIF7	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.7876586914062	2	519.757404	1037.50025	-0.92111	-0.00047875	-3.5943	-0.0018682	-4.5154	-0.0023469	519.7551196491471	55.056	0.79844	55.056	54.761	55.559	0					26	18	2	0	0	0	0.027462	1	4502	4502		42.396	10.866	1	150860	+		56694	21222	46762	46804	62078	62078					-0.016995546502357683
THSVRIRISGL	11	Unmodified	_THSVRIRISGL_					0	0	0			REV__nc|ENSG00000265944|J3KSC0|LINC01387	REV__nc|ENSG00000265944|J3KSC0|LINC01387	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8698120117188	2	619.870028	1237.7255	-3.6059	-0.0022352	2.5915	0.0016064	-1.0145	-0.00062885	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.65063	2	12725	12725;12816		40.058	3.5259	1	664560	+		56695	29186	46763	46805	62079;62080	62079					0.11614974819940471
THSVRIRISGL	11	Unmodified	_THSVRIRISGL_					0	0	0			REV__nc|ENSG00000265944|J3KSC0|LINC01387	REV__nc|ENSG00000265944|J3KSC0|LINC01387	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8682861328125	2	619.870028	1237.7255	-3.1194	-0.0019336	2.0434	0.0012667	-1.076	-0.00066696	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.71789	1	14850	14850		23.523	0.48021	1	806750	+		56696	29186	46763	46805	62081	62081					0.11614974819940471
THTDERPHA	9	Unmodified	_THTDERPHA_					0	0	0		ENSG00000130182|ENST00000576985|ZSCAN10;nc|ENSG00000130182|Q96SZ4-3|ZSCAN10;nc|ENSG00000130182|Q96SZ4|ZSCAN10;nc|ENSG00000130182|Q96SZ4-2|ZSCAN10	ENSG00000130182|ENST00000576985|ZSCAN10	ENSG00000130182|ENST00000576985|ZSCAN10	MULTI-SECPEP	OvCa9_classI_Rep2	2	532.8080444335938	2	532.249412	1062.48427	-0.86282	-0.00045924	-0.63437	-0.00033764	-1.4972	-0.00079688	532.2486935468785	109.44	0.79108	109.27	108.72	109.51	-0.17237					24	15	2	0	0	0	0.027462	1	10231	10231		38.806	9.6566	1	24894			56697	3965	46764	46806	62082	62082					-0.04447260887150151
THTDERPHA	9	Unmodified	_THTDERPHA_					0	0	0		ENSG00000130182|ENST00000576985|ZSCAN10;nc|ENSG00000130182|Q96SZ4-3|ZSCAN10;nc|ENSG00000130182|Q96SZ4|ZSCAN10;nc|ENSG00000130182|Q96SZ4-2|ZSCAN10	ENSG00000130182|ENST00000576985|ZSCAN10	ENSG00000130182|ENST00000576985|ZSCAN10	MULTI-MATCH	OvCa99_classI_Rep5	1		2	532.249412	1062.48427	1.6369	0.00087125	-1.9118	-0.0010176	-0.2749	-0.00014631	532.7492762398194	109.01	0.39328	109.01	108.8	109.19	0	-0.038309	-0.00079992	NaN	38.806	12	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94526			56698	3965	46764	46806							-0.04447260887150151
THTHTKKTN	9	Unmodified	_THTHTKKTN_					0	0	0			REV__ENST00000560371.5_1_14:103372405-103372555:+|nuORF	REV__ENST00000560371.5_1_14:103372405-103372555:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	534.2863159179688	2	534.283254	1066.55196	0.90057	0.00048116	1.9718	0.0010535	2.8724	0.0015347	534.284212437697	153.37	2.6517	153.37	152.52	155.17	0					122	56	3	0	0	0	0.3076	1	17947	17947		62.107	19.711	1	129630	+		56699	27618	46765	46807	62083	62083					0.021341890436815447
THTIQNRLKK	10	Unmodified	_THTIQNRLKK_					0	0	0			REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6	REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8695678710938	2	619.870028	1237.7255	-3.8587	-0.0023919	2.9348	0.0018192	-0.92393	-0.00057272	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.6349	1	15294	15294		37.812	4.9991	1	492670	+		56700	23238	46766	46808	62084	62084					0.11614974819917734
THTITHRRF	9	Unmodified	_THTITHRRF_					0	0	0			REV__nc|ENSG00000186300|Q8NEP9-2|ZNF555	REV__nc|ENSG00000186300|Q8NEP9-2|ZNF555	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.9507446289062	2	584.820338	1167.62612	0.29397	0.00017192	-3.3182	-0.0019405	-3.0242	-0.0017686	584.8182660598477	72.313	0.40839	72.313	72.125	72.533	0					12	9	2	0	0	0	0.027462	1	7025	7025		14.865	0	1	297480	+		56701	22573	46767	46809	62085	62085					0.04901576925840345
THTLAPLQLL	10	Unmodified	_THTLAPLQLL_					0	0	0			REV__ENST00000228741.7_1_12:96588285-96617411:+|nuORF	REV__ENST00000228741.7_1_12:96588285-96617411:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8299560546875	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.58282	1	14330	14330		44.117	6.9577	1	245610	+		56702	23776	46768	46810	62086	62086					0.10094577919812764
THTPGYLNVV	10	Unmodified	_THTPGYLNVV_					0	0	0			REV__nc|ENSG00000175497|Q8N608-4|DPP10	REV__nc|ENSG00000175497|Q8N608-4|DPP10	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3189086914062	2	550.790381	1099.56621	-0.70987	-0.00039099	-4.4376	-0.0024442	-5.1475	-0.0028352	550.788543175187	49.308	0.29863	49.308	49.119	49.418	0					13	6	3	0	0	0	0.026871	1	3668	3668		37.159	18.056	1	237650	+		56703	21901	46769	46811	62087	62087					0.02040841471944077
THTREYLQ	8	Unmodified	_THTREYLQ_					0	0	0			REV__nc|ENSG00000197044|Q8N8Z8-2|ZNF441	REV__nc|ENSG00000197044|Q8N8Z8-2|ZNF441	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2789306640625	2	524.26453	1046.51451	-0.12066	-6.3258E-05	-0.75494	-0.00039579	-0.8756	-0.00045905	524.2639770517767	71.854	0.66208	71.854	71.629	72.291	0					38	15	4	0	0	0	0.028476	1	7002	7002		40.573	1.7665	1	2681200	+		56704	22888	46770	46812	62088	62088					-0.0068890222196387185
THTTPHALQLL	11	Unmodified	_THTTPHALQLL_					0	0	0			REV__ENST00000533518.5_3_16:31095113-31102425:-|nuORF	REV__ENST00000533518.5_3_16:31095113-31102425:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	617.0078735351562	2	616.343312	1230.67207	1.8687	0.0011518	3.7541	0.0023138	5.6228	0.0034656	616.345489350203	128.55	0.51669	128.55	128.28	128.79	0					26	10	3	0	0	0	0.025594	1	14868	14868		33.922	26.231	1	187590	+		56705	20210	46771	46813	62089	62089					0.06596177317442198
THVGVRIN	8	Unmodified	_THVGVRIN_					0	0	0			REV__ADCY9|p.M486I|1|0.04|ENSG00000162104|chr16:4113985-4113985|C/G|missense_variant	REV__ADCY9|p.M486I|1|0.04|ENSG00000162104|chr16:4113985-4113985|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	448.25909423828125	2	448.259051	894.503549	-2.462	-0.0011036	2.7472	0.0012315	0.28525	0.00012786	448.2601337945915	142.71	1.2357	141.7	141.38	142.62	-1.0102					68	24	5	0	0	0	0.74229	1	11869	11869		30.504	8.5438	1	329850	+		56706	15572	46772	46814	62090	62090					0.05207740194418875
THVIVRIVKC	10	Unmodified	_THVIVRIVKC_					0	0	0			REV__ENSG00000140986|ENST00000268661|RPL3L	REV__ENSG00000140986|ENST00000268661|RPL3L	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3563232421875	2	584.355168	1166.69578	-2.3121	-0.0013511	4.4342	0.0025912	2.1222	0.0012401	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.83261	1	14585	14585		14.865	0	1	180810	+		56707	19710	46773	46815	62091	62091					0.11910319550270287
THVIVRIVKC	10	Unmodified	_THVIVRIVKC_					0	0	0			REV__ENSG00000140986|ENST00000268661|RPL3L	REV__ENSG00000140986|ENST00000268661|RPL3L	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3553466796875	2	584.355168	1166.69578	-1.7162	-0.0010029	3.9032	0.0022809	2.187	0.001278	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.78463	1	14483	14483		20.947	3.4789	1	833330	+		56708	19710	46773	46815	62092	62092					0.11910319550270287
THVRRHEV	8	Unmodified	_THVRRHEV_					0	0	0			REV__ENSG00000152475|ENST00000597582|ZNF837	REV__ENSG00000152475|ENST00000597582|ZNF837	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.2506713867188	2	517.286131	1032.55771	2.256	0.001167	-2.015	-0.0010424	0.24101	0.00012467	517.7870697915213	75.575	0.78515	75.575	75.33	76.115	0					25	19	2	0	0	0	0.028476	1	7540	7540		25.45	0	1	281660	+		56709	20289	46774	46816	62093	62093					0.04273332345997005
THYHDALGEI	10	Unmodified	_THYHDALGEI_					0	0	0			REV__tr|A0A553SRJ0|A0A553SRJ0_NIACIMetal-bindingproteinZinTOS=NialliacirculansOX=1397GN=CEQ21_01180PE=4SV=1	REV__tr|A0A553SRJ0|A0A553SRJ0_NIACIMetal-bindingproteinZinTOS=NialliacirculansOX=1397GN=CEQ21_01180PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.7738647460938	2	578.275095	1154.53564	0.7768	0.0004492	0.07296	4.2191E-05	0.84976	0.0004914	578.2748642308296	139.11	0.96567	139.11	138.69	139.66	0					35	19	3	0	0	0	0.026802	1	16247	16247		14.137	0	1	112170	+		56710	30735	46775	46817	62094	62094					-0.03544936913090169
THYIIKNL	8	Unmodified	_THYIIKNL_					0	0	0			REV__nc|ENSG00000196228|Q6IMI6|SULT1C3	REV__nc|ENSG00000196228|Q6IMI6|SULT1C3	MULTI-MSMS	OvCa9_classI_Rep3	3	501.29046630859375	2	501.292559	1000.57057	-1.4695	-0.00073667	-2.6975	-0.0013522	-4.167	-0.0020889	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.75241	1	11105	11105		25.45	2.4077	1	97838	+		56711	29075	46776	46818	62095	62095					0.07030350685522535
TIADIKFLAK	10	Unmodified	_TIADIKFLAK_					0	0	0			REV__nc|ENSG00000107736|Q9H251-4|CDH23	REV__nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.33837890625	2	560.342249	1118.66995	-5.405	-0.0030286	1.8017	0.0010096	-3.6033	-0.0020191	560.3432112723539	161.88	2.7705	160.26	159.52	162.29	-1.6239					146	74	5	0	0	0	0.82648	1	16066	16066		15.642	0.77694	1	403070	+		56712	17855	46777	46819	62096	62096					0.11535748579603933
TIAGGKLTGYR	11	Unmodified	_TIAGGKLTGYR_					0	0	0		tr|A0A553SLN4|A0A553SLN4_NIACIGlycerol-3-phosphatedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_20840PE=3SV=1	tr|A0A553SLN4|A0A553SLN4_NIACIGlycerol-3-phosphatedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_20840PE=3SV=1	tr|A0A553SLN4|A0A553SLN4_NIACIGlycerol-3-phosphatedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_20840PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	568.8251953125	2	568.824755	1135.63496	0.72479	0.00041228	2.6102	0.0014847	3.335	0.001897	568.826154578799	128.02	1.045	126.93	126.62	127.67	-1.0933					47	20	4	0	0	0	0.63561	1	10064	10064		41.427	3.6151	1	139430			56713	33745	46778	46820	62097	62097					0.07256505771647426
TIAIEKLVL	9	Unmodified	_TIAIEKLVL_					0	0	0			REV__ENST00000467239.5_1_3:125647501-125647669:+|nuORF	REV__ENST00000467239.5_1_3:125647501-125647669:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.3147888183594	2	500.326068	998.637583	1.691	0.00084603	4.139	0.0020709	5.83	0.0029169	500.32845780228615	125.97	0.37386	125.97	125.76	126.13	0					11	7	2	0	0	0	0.027461	1	14581	14581		40.778	11.629	1	111170	+		56714	26203	46779	46821	62098	62098					0.1382096117661149
TIAILPTSR	9	Unmodified	_TIAILPTSR_					0	0	0		ENST00000466480.1_1_1:114448336-114454776:+|nuORF;ENSG00000118655|ENST00000650450|DCLRE1B	ENST00000466480.1_1_1:114448336-114454776:+|nuORF	ENST00000466480.1_1_1:114448336-114454776:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.2928466796875	2	486.297842	970.581131	-0.50766	-0.00024688	0.29053	0.00014128	-0.21714	-0.00010559	486.2978270614689	39.408	1.0922	36.698	36.509	37.601	-2.7097					40	21	2	0	0	0	0.027462	1	1915	1915		21.96	14.767	1	80115			56715	3319	46780	46822	62099	62099					0.09466333339946686
TIAISKRIE	9	Unmodified	_TIAISKRIE_					0	0	0			REV__tr|A0A7D6ZHI0|A0A7D6ZHI0_9CLOTGGDEFdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03065PE=4SV=1	REV__tr|A0A7D6ZHI0|A0A7D6ZHI0_9CLOTGGDEFdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03065PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7820434570312	2	515.816399	1029.61824	-1.1122	-0.00057368	-0.86027	-0.00044374	-1.9725	-0.0010174	515.8160510224958	118.03	0.94633	116.69	116.26	117.21	-1.3444					25	17	2	0	0	0	0.027462	1	11050	11050		37.159	0	1	26668	+		56716	32026	46781	46823	62100	62100					0.10462004885721399
TIAKRLVL	8	Unmodified	_TIAKRLVL_					0	0	0		ENST00000466327.5_1_6:30312945-30313451:+|nuORF;ENST00000498414.5_1_6:30312945-30313176:+|nuORF;ENST00000489124.5_1_6:30312945-30314275:+|nuORF;ENSG00000241370|ENST00000442966|RPP21;nc|ENSG00000241370|Q9H633-2|RPP21;nc|ENSG00000241370|Q9H633-3|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21	ENST00000466327.5_1_6:30312945-30313451:+|nuORF;nc|ENSG00000241370|Q9H633-3|RPP21;nc|ENSG00000241370|Q9H633-4|RPP21	ENST00000466327.5_1_6:30312945-30313451:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	457.314453125	2	457.313295	912.612037	0.011787	5.3902E-06	-0.14941	-6.8326E-05	-0.13762	-6.2936E-05	457.3132274150166	71.13	2.4399	71.13	70.877	73.317	0					162	60	5	0	0	0	0.67745	1	6938	6938		47.916	7.343	1	56551000			56717	12287;15337;15338	46782	46824	62101	62101					0.1522353144483759
TIALFSTLL	9	Unmodified	_TIALFSTLL_					0	0	0			REV__tr|A0A553SPY9|A0A553SPY9_NIACIPhosphate/phosphonateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_13470PE=3SV=1	REV__tr|A0A553SPY9|A0A553SPY9_NIACIPhosphate/phosphonateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_13470PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.79547119140625	2	489.797143	977.579734	0.017229	8.4388E-06	-3.221	-0.0015777	-3.2038	-0.0015692	489.7954117038854	39.414	1.097	36.487	36.246	37.343	-2.9264					61	21	4	0	0	0	0.44294	1	1622	1622		47.916	3.7988	1	390760	+		56718	30586	46783	46825	62102	62102					0.09004699251204329
TIALPEVLGG	10	Unmodified	_TIALPEVLGG_					0	0	0			REV__ENST00000505451.5_1_4:25314431-25353701:+|nuORF	REV__ENST00000505451.5_1_4:25314431-25353701:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	485.2825927734375	2	485.2844	968.554247	-1.9489	-0.00094577	-1.0764	-0.00052236	-3.0253	-0.0014681	485.2837680529316	35.087	1.3898	32.377	32.109	33.499	-2.7097					66	27	4	0	0	0	0.64063	1	1389	1389		37.159	1.5408	1	549360	+		56719	21355	46784	46826	62103	62103					0.06871224728774905
TIALTEVGDL	10	Unmodified	_TIALTEVGDL_					0	0	0			REV__PIK3C2A|p.F1330Sfs*13|1|0.04|ENSG00000011405|chr11:17101297-17101298|-/TAACATTTTAGAAAGAG|frameshift_variant	REV__PIK3C2A|p.F1330Sfs*13|1|0.04|ENSG00000011405|chr11:17101297-17101298|-/TAACATTTTAGAAAGAG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.75732421875	2	516.284597	1030.55464	2.0504	0.0010586	-4.0895	-0.0021113	-2.039	-0.0010527	516.2826036847043	108.03	1.0725	108.03	107.9	108.97	0					29	24	2	0	0	0	0.026688	1	12220	12220		32.812	0	1	182000	+		56720	16489	46785	46827	62104	62104					0.040585996579466155
TIALWALW	8	Unmodified	_TIALWALW_					0	0	0			REV__ENSG00000258986|ENST00000556573|TMEM179	REV__ENSG00000258986|ENST00000556573|TMEM179	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.2928466796875	2	487.278921	972.543289	-0.7001	-0.00034115	3.6128	0.0017605	2.9127	0.0014193	487.28047275604075	39.144	0.84137	36.434	36.211	37.052	-2.7097					19	16	2	0	0	0	0.028476	1	1915	1915		44.531	26.269	1	27114	+		56721	23556	46786	46828	62105	62105					0.05591867145119522
TIAMSSLFIIE	11	Unmodified	_TIAMSSLFIIE_					0	0	0		tr|A0A7D6ZTZ5|A0A7D6ZTZ5_9CLOTM50familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22075PE=3SV=1	tr|A0A7D6ZTZ5|A0A7D6ZTZ5_9CLOTM50familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22075PE=3SV=1	tr|A0A7D6ZTZ5|A0A7D6ZTZ5_9CLOTM50familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22075PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	409.5823974609375	3	408.889664	1223.64716	-0.069474	-2.8407E-05	3.0071	0.0012296	2.9377	0.0012012	408.8906839565954	61.228	0.47033	58.468	58.254	58.725	-2.7593					10	8	2	0	0	0	0.025806	1	4519	4519		34.087	18.749	1	16311			56722	35762	46787	46829	62106	62106					0.044283613998231885
TIAQLVHAV	9	Unmodified	_TIAQLVHAV_					0	0	0		nc|ENSG00000160208|Q14684-2|RRP1B;ENSG00000160208|ENST00000340648|RRP1B;RRP1B|p.K182Efs*48|1|0.05|ENSG00000160208|chr21:43675151-43675152|-/G|frameshift_variant	nc|ENSG00000160208|Q14684-2|RRP1B	nc|ENSG00000160208|Q14684-2|RRP1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.7879333496094	2	476.284734	950.554916	2.3868	0.0011368	-2.24	-0.0010669	0.14681	6.9924E-05	476.28340745712967	95.818	0.71565	95.818	95.495	96.21	0					29	16	2	0	0	0	0.027461	1	10444	10444		58.782	21.623	1	398860			56723	15128	46788	46830	62107	62107					0.07766064168470166
TIAVSAYIKN	10	Unmodified	_TIAVSAYIKN_					0	0	0			REV__tr|A0A7D6W0U6|A0A7D6W0U6_9CLOTRadicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01200PE=4SV=1	REV__tr|A0A7D6W0U6|A0A7D6W0U6_9CLOTRadicalSAMproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01200PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3093872070312	2	540.308406	1078.60226	-2.1488	-0.001161	2.6541	0.001434	0.50529	0.00027301	540.3097600180628	118.45	2.7194	118.3	117.89	120.61	-0.14755					130	54	4	0	0	0	0.20801	1	11466	11466		93.195	27.392	1	293380	+		56724	31865	46789	46831	62108	62108					0.06610298648797652
TIAYGVIELY	10	Unmodified	_TIAYGVIELY_					0	0	0		ENSG00000105928|ENST00000645220|GSDME;nc|ENSG00000105928|O60443-3|GSDME;ENST00000493723.5_1_7:24756537-24789393:-|nuORF	ENSG00000105928|ENST00000645220|GSDME	ENSG00000105928|ENST00000645220|GSDME	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.3347778320312	2	571.310615	1140.60668	0.46364	0.00026488	2.5391	0.0014506	3.0028	0.0017155	571.3125791244539	114.77	1.7027	114.77	113.83	115.54	0					80	36	4	0	0	0	0.026915	1	13195	13195		35.618	5.1146	1	424030			56725	2512	46790	46832	62109	62109					0.04199763071733287
TICQCDHLTHF	11	Unmodified	_TICQCDHLTHF_					0	0	0		nc|ENSG00000156920|Q8IZF6-2|ADGRG4;nc|ENSG00000156920|Q8IZF6-3|ADGRG4;ENSG00000156920|ENST00000394143|ADGRG4	nc|ENSG00000156920|Q8IZF6-2|ADGRG4	nc|ENSG00000156920|Q8IZF6-2|ADGRG4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	439.2481689453125	3	439.862002	1316.56418	-0.34855	-0.00015331	3.2373	0.001424	2.8888	0.0012707	439.8627794815323	52.177	0.25241	48.969	48.842	49.094	-3.208					6	4	2	0	0	0	0.026204	1	3093	3093		27.644	17.998	1	4542.4			56726	5863	46791	46833	62110	62110					-0.08144278599843346
TIDPATPWV	9	Unmodified	_TIDPATPWV_					0	0	0			REV__nc|ENSG00000038358|Q6P2E9-2|EDC4	REV__nc|ENSG00000038358|Q6P2E9-2|EDC4	MULTI-MSMS	OvCa99_classI_Rep5	1	500.2615661621094	2	500.260925	998.507297	1.3743	0.00068751	0.40391	0.00020206	1.7782	0.00088957	500.2609959121263	147.53	1.7605	147.53	147.21	148.97	0					83	35	4	0	0	0	0.11171	1	17270	17270		94.006	0.81096	1	1454700	+		56727	16617	46792	46834	62111	62111					0.007983651776271472
TIDVRFQNL	9	Unmodified	_TIDVRFQNL_					0	0	0			REV__ENSG00000233802|ENST00000623787|TRIM49D2	REV__ENSG00000233802|ENST00000623787|TRIM49D2	MULTI-MSMS	OvCa99_classI_Rep5	1	553.305419921875	2	553.303655	1104.59276	-0.48912	-0.00027063	0.77918	0.00043112	0.29006	0.00016049	553.3040560040763	69.572	1.1808	69.572	69.228	70.408	0					63	28	3	0	0	0	0.29717	1	6640	6640		63.306	6.5852	1	9748900	+		56728	23352	46793	46835	62112	62112					0.04464530363270569
TIEGQLSSGTG	11	Unmodified	_TIEGQLSSGTG_					0	0	0			REV__nc|ENSG00000183798|Q9NT22-2|EMILIN3	REV__nc|ENSG00000183798|Q9NT22-2|EMILIN3	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.7653198242188	2	525.259111	1048.50367	-0.36308	-0.00019071	1.0105	0.00053077	0.64742	0.00034006	525.7637097829612	64.427	3.1646	60.952	60.49	63.655	-3.475					179	64	5	0	0	0	0.67529	1	4622	4622		37.812	0	1	5640000	+		56729	22386	46794	46836	62113	62113					-0.018643493868921723
TIEKDYIDYI	10	Unmodified	_TIEKDYIDYI_					0	0	0		ENSG00000170464|ENST00000302060|DNAJC18	ENSG00000170464|ENST00000302060|DNAJC18	ENSG00000170464|ENST00000302060|DNAJC18	MULTI-SECPEP	OvCa9_classI_Rep4_	4	424.91168212890625	3	424.883455	1271.62853	-1.0184	-0.00043268	-1.663	-0.00070657	-2.6813	-0.0011392	424.8825972465122	66.078	0.43534	62.593	62.325	62.761	-3.4854					13	8	2	0	0	0	0.026881	1	4777	4777		30.569	0	1	25239			56730	7105	46795	46837	62114	62114					0.0035852302962666727
TIFAALHYD	9	Unmodified	_TIFAALHYD_					0	0	0			REV__ENSG00000176142|ENST00000319172|TMEM39A	REV__ENSG00000176142|ENST00000319172|TMEM39A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.3223266601562	2	525.766374	1049.5182	-0.70374	-0.00037	-1.1005	-0.00057862	-1.8043	-0.00094862	525.7654356365335	98.6	0.97674	96.222	95.921	96.898	-2.3786					39	18	3	0	0	0	0.027462	1	8814	8814		29.15	0	1	48131	+		56731	21932	46796	46838	62115	62115					-0.004582324480907118
TIFALKVTTSP	11	Unmodified	_TIFALKVTTSP_					0	0	0			REV__NID1|p.H677Vfs*128|1|0.3|ENSG00000116962|chr1:236024169-236024170|-/AC|frameshift_variant	REV__NID1|p.H677Vfs*128|1|0.3|ENSG00000116962|chr1:236024169-236024170|-/AC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3451538085938	2	589.344989	1176.67542	-2.1868	-0.0012888	-1.3084	-0.00077111	-3.4952	-0.0020599	589.3441619466173	148.26	4.549	146.82	145.53	150.08	-1.435					304	95	6	0	0	0	0.7046	1	14762	14762		28.081	3.5623	1	385010	+		56732	29252	46797	46839	62116	62116					0.09415427371413898
TIFAVKDR	8	Unmodified	_TIFAVKDR_					0	0	0			REV__ENST00000461802.1_1_16:452035-456544:+|nuORF	REV__ENST00000461802.1_1_16:452035-456544:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.91876220703125	2	475.276909	948.539266	0.32422	0.00015409	-0.94412	-0.00044872	-0.6199	-0.00029462	475.2762569547467	63.552	0.99205	63.552	62.902	63.894	0					44	24	3	0	0	0	0.028476	1	5732	5732		17.365	0	1	1206000	+		56733	23458	46798	46840	62117	62117					0.06293777651421806
TIFDNFLITN	10	Unmodified	_TIFDNFLITN_					0	0	0		NFIX-CALR|1|fusion;NFIX-CALR|4|fusion;NFIX-CALR|2|fusion;ENSG00000179218|ENST00000316448|CALR;NFIX-CALR|3|fusion	NFIX-CALR|1|fusion;NFIX-CALR|3|fusion	NFIX-CALR|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep3	3	598.3544921875	2	599.311146	1196.60774	2.0612	0.0012353	-2.0338	-0.0012189	0.027415	1.643E-05	599.310073672996	114.04	1.4766	112.98	112.37	113.85	-1.055					76	28	4	0	0	0	0.026891	1	8419	8419		39.253	11.371	1	116830			56734	15428;15429	46799	46841	62118	62118					0.017299774406183133
TIFDRVYTI	9	Unmodified	_TIFDRVYTI_					0	0	0		ENSG00000128052|ENST00000263923|KDR	ENSG00000128052|ENST00000263923|KDR	ENSG00000128052|ENST00000263923|KDR	MULTI-MSMS	OvCa9_classI_Rep3	3	564.30908203125	2	564.308406	1126.60226	-1.0164	-0.00057356	1.0427	0.00058841	0.026304	1.4844E-05	564.3088735856073	117.1	2.2291	116.07	115.65	117.88	-1.0324					107	44	3	0	0	0	0.22035	2	8761	8761;8765		72.879	7.1399	1	365550			56735	3864	46800	46842	62119;62120	62119					0.04402298648801661
TIFDRVYTI	9	Unmodified	_TIFDRVYTI_					0	0	0		ENSG00000128052|ENST00000263923|KDR	ENSG00000128052|ENST00000263923|KDR	ENSG00000128052|ENST00000263923|KDR	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.3074340820312	2	564.308406	1126.60226	0.60376	0.00034071	-0.69064	-0.00038973	-0.086873	-4.9023E-05	564.3078776914901	117.37	2.0971	116.01	115.67	117.76	-1.3645					102	39	4	0	0	0	0.1243	1	10960	10960		90.601	24.172	1	409630			56736	3864	46800	46842	62121	62121					0.04402298648801661
TIFEVLESN	9	Unmodified	_TIFEVLESN_					0	0	0		BMP10|p.K174N|1|0.18|ENSG00000163217|chr2:68866384-68866384|T/A|missense_variant	BMP10|p.K174N|1|0.18|ENSG00000163217|chr2:68866384-68866384|T/A|missense_variant	BMP10|p.K174N|1|0.18|ENSG00000163217|chr2:68866384-68866384|T/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.2977905273438	2	526.268947	1050.52334	1.5715	0.00082704	-1.1947	-0.00062871	0.37686	0.00019833	526.2682097776269	90.225	1.872	88.923	88.334	90.206	-1.302					73	36	3	0	0	0	0.027462	1	7903	7903		27.882	2.3082	1	287130			56737	153	46801	46843	62122	62122					0.00010026623863268469
TIFEVLESN	9	Unmodified	_TIFEVLESN_					0	0	0		BMP10|p.K174N|1|0.18|ENSG00000163217|chr2:68866384-68866384|T/A|missense_variant	BMP10|p.K174N|1|0.18|ENSG00000163217|chr2:68866384-68866384|T/A|missense_variant	BMP10|p.K174N|1|0.18|ENSG00000163217|chr2:68866384-68866384|T/A|missense_variant	MULTI-MATCH	OvCa99_classI_Rep5	1		2	526.268947	1050.52334	3.0361	0.0015978	0.54569	0.00028718	3.5818	0.001885	526.2690605775957	88.642	0.37877	88.642	88.298	88.677	0	-0.10527	4.0444E-05	NaN	27.882	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	366030			56738	153	46801	46843							0.00010026623863268469
TIFFPCWMV	9	Unmodified	_TIFFPCWMV_					0	0	0			REV__nc|ENSG00000102468|P28223-2|HTR2A	REV__nc|ENSG00000102468|P28223-2|HTR2A	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.2704467773438	2	572.271924	1142.52929	0.91483	0.00052353	0.51093	0.00029239	1.4258	0.00081592	572.2721058476293	139.2	1.0927	139.2	138.98	140.07	0					42	22	4	0	0	0	0.027449	1	16231	16231		50.025	20.875	1	124840	+		56739	17558	46802	46844	62123	62123					-0.0362686966984711
TIFGKRKV	8	Unmodified	_TIFGKRKV_					0	0	0			REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.75799560546875	2	474.803094	947.591636	-0.35086	-0.00016659	0.19931	9.4633E-05	-0.15155	-7.1958E-05	474.8030774364362	55.041	0.71086	55.041	54.848	55.559	0					28	16	2	0	0	0	0.028476	1	4519	4519		12.207	9.0476	1	310810	+		56740	17513	46803	46845	62124	62124					0.11574360785039062
TIFHRCFL	8	Unmodified	_TIFHRCFL_					0	0	0			REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|77|2|sense	REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|77|2|sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.8009033203125	2	518.77348	1035.53241	-0.73424	-0.00038091	2.815	0.0014604	2.0808	0.0010794	518.7743959110886	86.095	0.6507	83.875	83.536	84.187	-2.2204					31	12	4	0	0	0	0.028476	1	5110	5110		24.203	7.7296	1	62095	+		56741	28236	46804	46846	62125	62125					0.016061414992009304
TIFIKLSEI	9	Unmodified	_TIFIKLSEI_					0	0	0		tr|A0A553SF62|A0A553SF62_NIACISodium/prolinesymporterOS=NialliacirculansOX=1397GN=putPPE=3SV=1	tr|A0A553SF62|A0A553SF62_NIACISodium/prolinesymporterOS=NialliacirculansOX=1397GN=putPPE=3SV=1	tr|A0A553SF62|A0A553SF62_NIACISodium/prolinesymporterOS=NialliacirculansOX=1397GN=putPPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	531.8004760742188	2	532.323525	1062.6325	-0.32918	-0.00017523	-0.12867	-6.8494E-05	-0.45785	-0.00024372	532.3232613226497	117.38	1.3384	116.35	116.14	117.48	-1.0324					48	26	2	0	0	0	0.027441	1	8892	8892		49.442	0	1	30331			56742	32995	46805	46847	62126	62126					0.10368657313983931
TIFKLCSI	8	Unmodified	_TIFKLCSI_					0	0	0		nc|nan|Q9GZU0-2|C6orf62;ENSG00000112308|ENST00000378119|C6orf62	nc|nan|Q9GZU0-2|C6orf62	nc|nan|Q9GZU0-2|C6orf62	MULTI-SECPEP	OvCa9_classI_Rep2	2	462.7799377441406	2	462.764789	923.515025	0.26653	0.00012334	-2.5683	-0.0011885	-2.3018	-0.0010652	462.7628634204325	111.26	1.5779	111.12	110.63	112.21	-0.13961					76	31	3	0	0	0	0.028476	1	10506	10506		35.618	2.1027	1	31846			56743	2898	46806	46848	62127	62127					0.050208011735321634
TIFLFSTGF	9	Unmodified	_TIFLFSTGF_					0	0	0			REV__nc|ENSG00000148384|Q9NRR6-2|INPP5E	REV__nc|ENSG00000148384|Q9NRR6-2|INPP5E	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7938842773438	2	516.773668	1031.53278	2.1645	0.0011186	1.2552	0.00064867	3.4197	0.0017672	517.2765147432904	84.399	0.58118	84.399	84.177	84.758	0					22	13	2	0	0	0	0.027456	1	8866	8866		38.806	0	1	452170	+		56744	20107	46807	46849	62128	62128					0.018278397000358382
TIFLFSTGF	9	Unmodified	_TIFLFSTGF_					0	0	0			REV__nc|ENSG00000148384|Q9NRR6-2|INPP5E	REV__nc|ENSG00000148384|Q9NRR6-2|INPP5E	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7938842773438	2	516.773668	1031.53278	2.0195	0.0010436	4.2524	0.0021975	6.2719	0.0032412	516.7758770850671	84.846	0.16635	84.846	84.716	84.882	0					5	3	2	0	0	0	0.027456	1	8866	8866		38.806	8.3025	1	54212	+		56745	20107	46807	46849	62129	62129					0.018278397000358382
TIFLKKGLR	9	Unmodified	_TIFLKKGLR_					0	0	0			REV__tr|A0A7D7A6M7|A0A7D7A6M7_9CLOTNAD(P)/FAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10870PE=4SV=1	REV__tr|A0A7D7A6M7|A0A7D7A6M7_9CLOTNAD(P)/FAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10870PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	538.3526611328125	2	538.352951	1074.69135	1.9638	0.0010572	-2.0995	-0.0011303	-0.13577	-7.3094E-05	538.3516679385732	66.531	2.2143	63.585	63.265	65.479	-2.9459					98	43	3	0	0	0	0.61208	1	2749	2749		30.504	0	1	167090	+		56746	32662	46808	46850	62130	62130					0.15699178398972435
TIFLLQKKI	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))TIFLLQKKI_					1	0	0		chr17:59683985-59685587|99|26.21|0.9|4.86|+|1|CLTC,CLTC|1	chr17:59683985-59685587|99|26.21|0.9|4.86|+|1|CLTC,CLTC|1	chr17:59683985-59685587|99|26.21|0.9|4.86|+|1|CLTC,CLTC|1	MULTI-MSMS	OvCa99_classI_Rep5	1	573.369384765625	2	573.368267	1144.72198	-0.0092487	-5.3029E-06	-2.9713	-0.0017036	-2.9805	-0.001709	573.3665679624819	57.754	3.5482	57.754	57.48	61.028	0					220	87	5	0	0	0	0.33652	1	4912	4912		58.782	11.125	1	19298000			56747	392	46809	46851	62131	62131					0.15540911993366535
TIFNLIGPL	9	Unmodified	_TIFNLIGPL_					0	0	0		tr|A0A553SLY5|A0A553SLY5_NIACIAnthranilatephosphoribosyltransferaseOS=NialliacirculansOX=1397GN=trpDPE=3SV=1	tr|A0A553SLY5|A0A553SLY5_NIACIAnthranilatephosphoribosyltransferaseOS=NialliacirculansOX=1397GN=trpDPE=3SV=1	tr|A0A553SLY5|A0A553SLY5_NIACIAnthranilatephosphoribosyltransferaseOS=NialliacirculansOX=1397GN=trpDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.2988586425781	2	494.29731	986.580068	-1.4465	-0.00071498	1.2801	0.00063276	-0.16635	-8.2228E-05	494.2977438636246	125.06	1.7072	123.67	123.28	124.99	-1.3908					64	33	3	0	0	0	0.24951	1	11883	11883		68.787	12.066	1	176560			56748	33775	46810	46852	62132	62132					0.08624118971033568
TIGADDYMTKP	11	Unmodified	_TIGADDYMTKP_					0	0	0		tr|A0A553SSW0|A0A553SSW0_NIACIVanR-ABDEGLNfamilyDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=vanRPE=4SV=1	tr|A0A553SSW0|A0A553SSW0_NIACIVanR-ABDEGLNfamilyDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=vanRPE=4SV=1	tr|A0A553SSW0|A0A553SSW0_NIACIVanR-ABDEGLNfamilyDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=vanRPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	605.370849609375	2	606.284271	1210.55399	1.9676	0.0011929	3.6896	0.002237	5.6573	0.0034299	606.2868131603503	125.85	0.83548	125.85	125.49	126.32	0					39	17	3	0	0	0	0.025297	1	14577	14577		68.846	37.212	1	90450			56749	34425	46811	46853	62133	62133					-0.04286563053415193
TIGAVTVVLL	10	Unmodified	_TIGAVTVVLL_					0	0	0			REV__tr|A0A553SGR3|A0A553SGR3_NIACIDUF969domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11365PE=4SV=1	REV__tr|A0A553SGR3|A0A553SGR3_NIACIDUF969domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11365PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	494.2919616699219	2	493.318243	984.621933	0.07202	3.5529E-05	-0.23959	-0.00011819	-0.16757	-8.2664E-05	493.31791928211084	106.99	1.3119	105.72	105.57	106.89	-1.267					36	25	2	0	0	0	0.026802	1	7562	7562		42.396	10.866	1	25663	+		56750	29731	46812	46854	62134	62134					0.12900674659567812
TIGAVTVVLL	10	Unmodified	_TIGAVTVVLL_					0	0	0			REV__tr|A0A553SGR3|A0A553SGR3_NIACIDUF969domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11365PE=4SV=1	REV__tr|A0A553SGR3|A0A553SGR3_NIACIDUF969domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11365PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	493.318243	984.621933	0.32398	0.00015983	-0.33738	-0.00016644	-0.013398	-6.6093E-06	493.31805253077465	106.48	0.94675	106.17	105.58	106.52	-0.30836	0.20567	-0.00045914	NaN	42.396	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21441	+		56751	29731	46812	46854							0.12900674659567812
TIGIETPKI	9	Unmodified	_TIGIETPKI_					0	0	0		tr|A0A7D6W0Q6|A0A7D6W0Q6_9CLOTGTP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00720PE=3SV=1	tr|A0A7D6W0Q6|A0A7D6W0Q6_9CLOTGTP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00720PE=3SV=1	tr|A0A7D6W0Q6|A0A7D6W0Q6_9CLOTGTP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00720PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.290283203125	2	486.292225	970.569897	-0.92203	-0.00044837	0.73103	0.00035549	-0.191	-9.2881E-05	486.2924798333129	133.52	2.4622	132.39	132.07	134.54	-1.1249					111	49	3	0	0	0	0.61208	1	10890	10890		30.504	0	1	887170			56752	35384	46813	46855	62135	62135					0.08343511245789159
TIGSVTVALL	10	Unmodified	_TIGSVTVALL_					0	0	0		ENST00000484075.5_1_1:197411604-197447006:+|nuORF;nc|ENSG00000134376|P82279-5|CRB1;nc|ENSG00000134376|P82279-3|CRB1;ENSG00000134376|ENST00000367400|CRB1	ENST00000484075.5_1_1:197411604-197447006:+|nuORF	ENST00000484075.5_1_1:197411604-197447006:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	487.29827880859375	2	487.30005	972.585547	-2.0582	-0.0010029	-0.86892	-0.00042342	-2.9271	-0.0014264	487.29953188884207	145.86	1.1405	145.64	145.18	146.32	-0.22696					53	22	3	0	0	0	0.75594	1	14687	14687		24.203	0	1	104880			56753	4292	46814	46856	62136	62136					0.09815797762871625
TIGTLFAVL	9	Unmodified	_TIGTLFAVL_					0	0	0			REV__tr|A0A7D6VUH7|A0A7D6VUH7_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_17505PE=4SV=1	REV__tr|A0A7D6VUH7|A0A7D6VUH7_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_17505PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	467.2456970214844	2	467.784036	933.553519	-0.40112	-0.00018764	-2.0627	-0.00096491	-2.4638	-0.0011525	467.78280524235817	52.835	0.85086	49.627	49.298	50.149	-3.208					25	16	2	0	0	0	0.027455	1	3244	3244		42.396	5.237	1	45759	+		56754	31679	46815	46857	62137	62137					0.08408430079703066
TIGTLFAVL	9	Unmodified	_TIGTLFAVL_					0	0	0			REV__tr|A0A7D6VUH7|A0A7D6VUH7_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_17505PE=4SV=1	REV__tr|A0A7D6VUH7|A0A7D6VUH7_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_17505PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	467.784036	933.553519	-1.2763	-0.00059705	-1.7141	-0.00080184	-2.9905	-0.0013989	467.78309904800506	52.308	0.74045	49.495	49.246	49.986	-2.8129	-0.06608	8.7449E-05	NaN	51.335	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40189	+		56755	31679	46815	46857							0.08408430079703066
TIHERVKPHK	10	Unmodified	_TIHERVKPHK_					0	0	0		tr|A0A7D7A402|A0A7D7A402_9CLOTDUF1062domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23590PE=4SV=1	tr|A0A7D7A402|A0A7D7A402_9CLOTDUF1062domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23590PE=4SV=1	tr|A0A7D7A402|A0A7D7A402_9CLOTDUF1062domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23590PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.69464111328125	3	415.578923	1243.71494	0.077525	3.2218E-05	-0.90586	-0.00037646	-0.82833	-0.00034424	415.5785177569243	49.39	0.47334	49.39	49.119	49.593	0					18	10	3	0	0	0	0.026915	1	3703	3703		20.03	0	1	136700			56756	36133	46816	46858	62138	62138					0.10282992165480209
TIHHYWHLFIL	11	Unmodified	_TIHHYWHLFIL_					0	0	0			REV__ENSG00000170522|ENST00000302274|ELOVL6	REV__ENSG00000170522|ENST00000302274|ELOVL6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.80340576171875	3	493.934706	1478.78229	-0.50825	-0.00025104	1.2269	0.000606	0.71862	0.00035495	493.93556776848	51.227	1.5104	48.054	47.568	49.078	-3.1734					77	29	4	0	0	0	0.026189	1	3091	3091		14.694	5.8944	1	276330	+		56757	21546	46817	46859	62139	62139					0.062050223764572365
TIHKQDGKN	9	Unmodified	_TIHKQDGKN_					0	0	0		ENSG00000096968|ENST00000381652|JAK2;JAK2|p.Y913Vfs*12|1|0.15|ENSG00000096968|chr9:5089834-5089835|-/A|frameshift_variant;JAK2|p.C616Vfs*14|1|0.06|ENSG00000096968|chr9:5073766-5073766|A/-|frameshift_variant	ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.7810668945312	2	520.777805	1039.54106	0.20626	0.00010741	0.18535	9.6524E-05	0.3916	0.00020394	520.7798230881186	141.63	0.39809	141.63	141.49	141.88	0					11	7	2	0	0	0	0.027462	1	16545	16545		25.574	0	1	31605			56758	1952	46818	46860	62140	62140					0.02286786669378671
TIHTMGRAF	9	Unmodified	_TIHTMGRAF_					0	0	0		ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	ENSG00000188897|ENST00000696174|unknown	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.27099609375	2	517.266019	1032.51748	-0.94503	-0.00048883	-0.88255	-0.00045651	-1.8276	-0.00094535	517.7674074550171	82.245	0.28981	79.562	79.346	79.635	-2.6829					6	5	2	0	0	0	0.027462	1	6783	6783		33.516	0	1	14983			56759	8514	46819	46861	62141	62141					0.0025264963119298045
TIIAEQTLI	9	Unmodified	_TIIAEQTLI_					0	0	0			REV__ENST00000431957.1_1_7:126935711-126936140:+|nuORF	REV__ENST00000431957.1_1_7:126935711-126936140:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	501.29718017578125	2	501.297507	1000.58046	-1.7009	-0.00085264	1.4294	0.00071655	-0.27147	-0.00013609	501.29808755011607	120.33	1.4803	120.16	119.84	121.32	-0.17137					84	29	5	0	0	0	0.24951	1	11615	11615		68.787	0	1	488720	+		56760	25727	46820	46862	62142	62142					0.08019493900246744
TIIAEQTLI	9	Unmodified	_TIIAEQTLI_					0	0	0			REV__ENST00000431957.1_1_7:126935711-126936140:+|nuORF	REV__ENST00000431957.1_1_7:126935711-126936140:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.296875	2	501.297507	1000.58046	-0.7406	-0.00037126	0.40125	0.00020114	-0.33935	-0.00017012	501.29758752104317	121.49	1.58	120.14	119.79	121.37	-1.3479					96	30	5	0	0	0	0.18193	3	11444	11444;11456;11466		79.451	8.4519	1	552180	+		56761	25727	46820	46862	62143;62144;62145	62143					0.08019493900246744
TIIDRQISQ	9	Unmodified	_TIIDRQISQ_					0	0	0			REV__nc|ENSG00000138670|Q0VAM2-2|RASGEF1B	REV__nc|ENSG00000138670|Q0VAM2-2|RASGEF1B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.786376953125	2	537.301113	1072.58767	-1.0632	-0.00057128	1.5393	0.00082707	0.47606	0.00025579	537.3019395810854	51.721	1.2615	48.548	48.224	49.486	-3.1734					69	24	4	0	0	0	0.027462	1	3117	3117		29.15	0	1	495070	+		56762	19558	46821	46863	62146	62146					0.054282265006804664
TIIEDGHKNV	10	Unmodified	_TIIEDGHKNV_					0	0	0			REV__ENSG00000174231|ENST00000304992|PRPF8	REV__ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.8273315429688	2	563.29857	1124.58259	2.0183	0.0011369	-3.7307	-0.0021015	-1.7124	-0.00096461	563.2967602174139	92.428	0.25536	92.428	92.216	92.472	0					8	5	2	0	0	0	0.026891	1	9973	9973		24.519	11.065	1	104070	+		56763	21818	46822	46864	62147	62147					0.025279226380462205
TIIEELSPL	9	Unmodified	_TIIEELSPL_					0	0	0		tr|A0A7D6VS71|A0A7D6VS71_9CLOTTryptophan--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=trpSPE=3SV=1	tr|A0A7D6VS71|A0A7D6VS71_9CLOTTryptophan--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=trpSPE=3SV=1	tr|A0A7D6VS71|A0A7D6VS71_9CLOTTryptophan--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=trpSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.302734375	2	507.789515	1013.56448	-1.0785	-0.00054764	-4.1673	-0.0021161	-5.2457	-0.0026637	508.28808092989277	90.901	0.30419	88.82	88.619	88.923	-2.0805					7	5	2	0	0	0	0.027448	1	5677	5677		44.117	5.0953	1	21984			56764	34993	46823	46865	62148	62148					0.05823787663337043
TIIMLENVHT	10	Unmodified	_TIIMLENVHT_					0	0	0			REV__ENSG00000171501|ENST00000373688|OR1N2	REV__ENSG00000171501|ENST00000373688|OR1N2	MULTI-SECPEP	OvCa9_classI_Rep2	2	585.3487548828125	2	585.812999	1169.61144	-0.51547	-0.00030197	-3.1504	-0.0018455	-3.6658	-0.0021475	585.8111608648363	73.645	0.68402	71.245	70.897	71.581	-2.3999					26	12	3	0	0	0	0.026915	1	5970	5970		27.882	0	1	32943	+		56765	21620	46824	46866	62149	62149					0.03342323942842995
TIIQYYVVQ	9	Unmodified	_TIIQYYVVQ_					0	0	0			REV__ENST00000400000.6_1_18:9954209-9954779:+|nuORF	REV__ENST00000400000.6_1_18:9954209-9954779:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	562.8193969726562	2	563.810782	1125.60701	0.89658	0.0005055	-4.4748	-0.002523	-3.5783	-0.0020175	563.8083778665092	121.34	1.3365	119.99	119.64	120.98	-1.3479					43	25	3	0	0	0	0.027462	1	11529	11529		20.947	0	1	113630	+		56766	25396	46825	46867	62150	62150					0.04923182791549152
TIIRQTFEES	10	Unmodified	_TIIRQTFEES_					0	0	0			REV__tr|A0A553SU77|A0A553SU77_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_06495PE=3SV=1	REV__tr|A0A553SU77|A0A553SU77_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_06495PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	612.023681640625	2	612.31696	1222.61937	1.92	0.0011756	-3.3445	-0.0020479	-1.4245	-0.00087227	612.3145952684805	106.03	0.96276	106.03	105.53	106.49	0					30	21	2	0	0	0	0.026674	1	11959	11959		26.063	7.8013	1	393540	+		56767	31048	46826	46868	62151	62151					0.01696174463972966
TIIRQVILD	9	Unmodified	_TIIRQVILD_					0	0	0			REV__nc|ENSG00000185813|Q99447-2|PCYT2	REV__nc|ENSG00000185813|Q99447-2|PCYT2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.8108520507812	2	535.832049	1069.64954	-1.1941	-0.00063981	0.3635	0.00019477	-0.83055	-0.00044504	535.8319536419634	66.564	0.78644	63.074	62.853	63.64	-3.4902					22	15	2	0	0	0	0.027453	1	4880	4880		64.207	11.271	1	50740	+		56768	22533	46827	46869	62152	62152					0.11750577919792704
TIISYYHTP	9	Unmodified	_TIISYYHTP_					0	0	0			REV__ENSG00000136960|ENST00000075322|ENPP2	REV__ENSG00000136960|ENST00000075322|ENPP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.325439453125	2	547.779482	1093.54441	-1.0679	-0.00058497	-3.1652	-0.0017339	-4.2331	-0.0023188	547.7776955923938	92.254	0.55901	89.712	89.517	90.076	-2.5425					18	10	2	0	0	0	0.027462	1	8008	8008		23.042	0	1	31393	+		56769	19427	46828	46870	62153	62153					0.0013803672338781325
TIISYYHTP	9	Unmodified	_TIISYYHTP_					0	0	0			REV__ENSG00000136960|ENST00000075322|ENPP2	REV__ENSG00000136960|ENST00000075322|ENPP2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	547.779482	1093.54441	1.4434	0.00079069	-6.0422	-0.0033098	-4.5988	-0.0025191	547.7760671152126	90.973	0.8373	89.738	89.488	90.326	-1.2355	0.020993	-0.0022286	NaN	23.042	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28777	+		56770	19427	46828	46870							0.0013803672338781325
TIISYYHTP	9	Unmodified	_TIISYYHTP_					0	0	0			REV__ENSG00000136960|ENST00000075322|ENPP2	REV__ENSG00000136960|ENST00000075322|ENPP2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	547.779482	1093.54441	-1.5207	-0.00083299	-2.6396	-0.0014459	-4.1603	-0.0022789	547.7779404282711	91.725	0.60571	89.701	89.483	90.089	-2.0241	-0.016022	0.0014992	NaN	23.042	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33420	+		56771	19427	46828	46870							0.0013803672338781325
TIIVITIYSK	10	Unmodified	_TIIVITIYSK_					0	0	0			REV__tr|A0A7D6VSY1|A0A7D6VSY1_9CLOTMagnesium-transportingATPase,P-type1OS=ClostridiumintestinaleOX=36845GN=mgtAPE=3SV=1	REV__tr|A0A7D6VSY1|A0A7D6VSY1_9CLOTMagnesium-transportingATPase,P-type1OS=ClostridiumintestinaleOX=36845GN=mgtAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.7932739257812	2	575.857732	1149.70091	1.3877	0.00079913	-2.728	-0.001571	-1.3403	-0.00077183	575.8566898334476	127.47	0.44764	127.47	127.32	127.76	0					18	9	3	0	0	0	0.027284	1	14782	14782		5.5578	0	1	415480	+		56772	31553	46829	46871	62154	62154					0.13204901893868737
TIKAFLVFIN	10	Unmodified	_TIKAFLVFIN_					0	0	0			REV__ENST00000334529.9_1_3:112182899-112183094:-|nuORF	REV__ENST00000334529.9_1_3:112182899-112183094:-|nuORF	MSMS	OvCa99_classI_Rep5	1	583.3565673828125	2	583.352617	1164.69068	NaN	NaN	NaN	NaN	NaN	NaN	NaN	164.88	1	164.88	164.38	165.38	0								0	0	0	0.14301	1	19203	19203		19.997	5.1319	1		+		56773	24568	46830	46872	62155	62155					0.11492338959305926
TIKEFCNPE	9	Unmodified	_TIKEFCNPE_					0	0	0		ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	ENSG00000183741|ENST00000407418|CBX6	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.3456420898438	2	540.755149	1079.49575	-0.22377	-0.00012101	-2.8464	-0.0015392	-3.0701	-0.0016602	540.7534919191185	81.665	1.5431	80.017	79.365	80.908	-1.6485					58	29	3	0	0	0	0.027426	1	6946	6946		56.721	0	1	104230			56774	8099	46831	46873	62156	62156					-0.040821999080208116
TIKETLVATT	10	Unmodified	_TIKETLVATT_					0	0	0			REV__ENSG00000136930|ENST00000259457|PSMB7	REV__ENSG00000136930|ENST00000259457|PSMB7	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.28564453125	2	538.813522	1075.61249	1.9816	0.0010677	1.3875	0.00074763	3.3691	0.0018153	538.8139386989543	85.296	0.37509	85.296	85.087	85.462	0					15	8	3	0	0	0	0.026714	1	8945	8945		35.152	0	1	291700	+		56775	19422	46832	46874	62157	62157					0.0777086158336715
TIKIVPGRR	9	Unmodified	_TIKIVPGRR_					0	0	0			REV__CON__Q0VBK2	REV__CON__Q0VBK2	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.3394775390625	2	520.340375	1038.6662	-0.78006	-0.0004059	0.73752	0.00038376	-0.042543	-2.2137E-05	520.3404101251207	39.944	1.9528	36.99	36.616	38.569	-2.9541					93	37	5	0	0	0	0.67509	1	1693	1693		23.042	5.6775	1	1048100	+	+	56776	16199	46833	46875	62158	62158					0.14841123596397665
TIKKGIVM	8	Unmodified	_TIKKGIVM_					0	0	0		tr|A0A7D7A653|A0A7D7A653_9CLOTAspartatecarbamoyltransferaseregulatorysubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_08990PE=4SV=1	tr|A0A7D7A653|A0A7D7A653_9CLOTAspartatecarbamoyltransferaseregulatorysubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_08990PE=4SV=1	tr|A0A7D7A653|A0A7D7A653_9CLOTAspartatecarbamoyltransferaseregulatorysubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_08990PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	446.22119140625	2	445.280606	888.546659	-0.012956	-5.7691E-06	0.8467	0.00037702	0.83375	0.00037125	445.28123726487587	34.11	0.43079	34.11	33.921	34.351	0					14	8	3	0	0	0	0.028476	1	1648	1648		26.796	13.837	1	53334			56777	36187	46834	46876	62159	62159					0.09792793927499588
TIKKLVLV	8	Unmodified	_TIKKLVLV_					0	0	0			REV__ENST00000346333.10_2_11:71510770-71510938:+|nuORF	REV__ENST00000346333.10_2_11:71510770-71510938:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.74407958984375	2	457.325871	912.637189	0.017231	7.8803E-06	0.89634	0.00040992	0.91357	0.0004178	457.32574485532336	71.17	0.35392	71.17	70.954	71.308	0					10	8	2	0	0	0	0.028476	1	6839	6839		44.117	13.613	1	321050	+		56778	24697	46835	46877	62160	62160					0.1773758624740367
TIKPNRTLP	9	Unmodified	_TIKPNRTLP_					0	0	0			REV__ENST00000458594.5_1_22:30218326-30221197:-|nuORF	REV__ENST00000458594.5_1_22:30218326-30221197:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.7971801757812	2	520.316566	1038.61858	-1.0981	-0.00057134	0.52941	0.00027546	-0.56865	-0.00029588	520.3165705349106	80.885	0.83056	78.175	77.81	78.641	-2.7106					27	16	3	0	0	0	0.027462	1	6607	6607		24.519	4.5224	1	70609	+		56779	26059	46836	46878	62161	62161					0.10081424605550637
TIKQIKVLA	9	Unmodified	_TIKQIKVLA_					0	0	0		tr|A0A7D7A2W9|A0A7D7A2W9_9CLOTPcfJdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19305PE=4SV=1	tr|A0A7D7A2W9|A0A7D7A2W9_9CLOTPcfJdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19305PE=4SV=1	tr|A0A7D7A2W9|A0A7D7A2W9_9CLOTPcfJdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19305PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.7526550292969	2	507.33951	1012.66447	2.2085	0.0011205	0.075029	3.8065E-05	2.2836	0.0011585	507.3393850405816	85.995	0.60086	85.995	85.75	86.35	0					36	14	3	0	0	0	0.027462	1	9101	9101		37.159	17.162	1	2151000			56780	36092	46837	46879	62162	62162					0.15864069787812696
TIKRPNAK	8	Unmodified	_TIKRPNAK_					0	0	0			REV__tr|A0A7D6ZRJ0|A0A7D6ZRJ0_9CLOTDUF4829domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12660PE=4SV=1	REV__tr|A0A7D6ZRJ0|A0A7D6ZRJ0_9CLOTDUF4829domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12660PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.5909118652344	2	464.290351	926.566149	0.18807	8.7321E-05	0.51858	0.00024077	0.70666	0.00032809	464.29049477108964	57.397	0.38725	57.397	57.221	57.609	0					12	8	2	0	0	0	0.028476	1	4825	4825		10.265	0	1	134440	+		56781	32160	46838	46880	62163	62163					0.09992886262602951
TIKRPNAK	8	Unmodified	_TIKRPNAK_					0	0	0			REV__tr|A0A7D6ZRJ0|A0A7D6ZRJ0_9CLOTDUF4829domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12660PE=4SV=1	REV__tr|A0A7D6ZRJ0|A0A7D6ZRJ0_9CLOTDUF4829domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12660PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	464.290351	926.566149	-0.73654	-0.00034197	0.8743	0.00040593	0.13776	6.396E-05	464.2906121441135	60.102	1.1002	57.332	56.983	58.083	-2.7702	-0.043368	0.00052869	NaN	10.265	34	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34901	+		56782	32160	46838	46880							0.09992886262602951
TIKSDNGQL	9	Unmodified	_TIKSDNGQL_					0	0	0			REV__nc|ENSG00000121741|Q9UBW7-2|ZMYM2	REV__nc|ENSG00000121741|Q9UBW7-2|ZMYM2	MULTI-MSMS	OvCa99_classI_Rep5	1	488.763916015625	2	488.258914	974.503274	-0.79009	-0.00038577	2.588	0.0012636	1.7979	0.00087786	488.25910160091115	43.463	0.80916	43.463	43.143	43.952	0					37	18	3	0	0	0	0.48047	1	2887	2887		44.377	0.26039	1	1327600	+		56783	18553	46839	46881	62164	62164					0.01500275683918062
TIKSGTSLIFK	11	Unmodified	_TIKSGTSLIFK_					0	0	0		nc|ENSG00000189056|P78509-3|RELN;nc|ENSG00000189056|P78509-2|RELN;ENSG00000189056|ENST00000428762|RELN	nc|ENSG00000189056|P78509-3|RELN	nc|ENSG00000189056|P78509-3|RELN	MSMS	OvCa9_classI_Rep4_	4	597.857421875	2	597.858264	1193.70197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.5	1	148.06	147.56	148.56	-1.4344								0	0	0	0.19474	1	14748	14748		29.17	3.596	1				56784	8529	46840	46882	62165	62165					0.11287116262747077
TIKTVIVEP	9	Unmodified	_TIKTVIVEP_					0	0	0		tr|A0A553SKK0|A0A553SKK0_NIACICysteinesynthasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_18760PE=4SV=1	tr|A0A553SKK0|A0A553SKK0_NIACICysteinesynthasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_18760PE=4SV=1	tr|A0A553SKK0|A0A553SKK0_NIACICysteinesynthasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_18760PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.2984619140625	2	500.307875	998.601197	-0.21977	-0.00010995	0.28259	0.00014138	0.062822	3.143E-05	500.30766977238727	122.28	0.8522	120.92	120.65	121.51	-1.3666					22	16	3	0	0	0	0.027462	1	11517	11517		24.519	0	1	36483			56785	33624	46841	46883	62166	62166					0.10184084279887884
TILDKEYII	9	Unmodified	_TILDKEYII_					0	0	0		tr|A0A7D6VM95|A0A7D6VM95_9CLOTTranscriptionantiterminationproteinNusBOS=ClostridiumintestinaleOX=36845GN=nusBPE=3SV=1	tr|A0A7D6VM95|A0A7D6VM95_9CLOTTranscriptionantiterminationproteinNusBOS=ClostridiumintestinaleOX=36845GN=nusBPE=3SV=1	tr|A0A7D6VM95|A0A7D6VM95_9CLOTTranscriptionantiterminationproteinNusBOS=ClostridiumintestinaleOX=36845GN=nusBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	554.3184204101562	2	554.31844	1106.62233	0.863	0.00047838	-1.4717	-0.00081577	-0.60866	-0.00033739	554.317459181584	121.82	1.2051	120.79	120.48	121.69	-1.0286					44	22	3	0	0	0	0.33652	1	9356	9356		58.782	0	1	131490			56786	34652	46842	46884	62167	62167					0.07328049588772956
TILFLFIFSH	10	Unmodified	_TILFLFIFSH_					0	0	0		ENSG00000139173|ENST00000266534|TMEM117	ENSG00000139173|ENST00000266534|TMEM117	ENSG00000139173|ENST00000266534|TMEM117	MULTI-SECPEP	OvCa9_classI_Rep4_	4	620.3155517578125	2	619.352617	1236.69068	0.25524	0.00015808	0.37439	0.00023188	0.62962	0.00038996	619.8551782316633	60.666	0.5998	57.236	57.095	57.694	-3.43					14	11	2	0	0	0	0.027056	1	4108	4108		27.882	0	1	18574			56787	4750	46843	46885	62168	62168					0.08180338959277833
TILGLFIRH	9	Unmodified	_TILGLFIRH_					0	0	0			REV__nc|ENSG00000155085|Q5TCS8-3|AK9	REV__nc|ENSG00000155085|Q5TCS8-3|AK9	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.3284301757812	2	535.329476	1068.6444	-0.57138	-0.00030588	-4.038	-0.0021617	-4.6094	-0.0024675	535.3273569849397	60.036	1.8717	56.606	56.259	58.131	-3.43					104	37	4	0	0	0	0.55588	1	4040	4040		37.159	0.71236	1	1821400	+		56788	28940	46844	46886	62169	62169					0.11282318847861461
TILGTVLPP	9	Unmodified	_TILGTVLPP_					0	0	0		tr|A0A7D6ZYP8|A0A7D6ZYP8_9CLOTChromatetransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_03450PE=3SV=1	tr|A0A7D6ZYP8|A0A7D6ZYP8_9CLOTChromatetransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_03450PE=3SV=1	tr|A0A7D6ZYP8|A0A7D6ZYP8_9CLOTChromatetransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_03450PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.74407958984375	2	455.784036	909.553519	0.07519	3.4271E-05	-2.1738	-0.00099076	-2.0986	-0.00095649	455.7827417155752	71.127	0.43436	71.127	70.954	71.389	0					17	10	2	0	0	0	0.027417	1	6839	6839		55.504	9.5523	1	215540			56789	35925	46845	46887	62170	62170					0.09512430079701062
TILGYFDY	8	Unmodified	_TILGYFDY_					0	0	0		nc|ENSG00000157388|Q01668-2|CACNA1D;nc|ENSG00000157388|Q01668-4|CACNA1D;CACNA1D|p.Q1955Pfs*19|1|0.09|ENSG00000157388|chr3:53808762-53808763|-/CTCCTCCTTCAGAGAGTGTTGTGCAG|frameshift_variant;nc|ENSG00000157388|Q01668-3|CACNA1D;ENSG00000157388|ENST00000350061|CACNA1D	nc|ENSG00000157388|Q01668-2|CACNA1D	nc|ENSG00000157388|Q01668-2|CACNA1D	MULTI-SECPEP	OvCa9_classI_Rep2	2	495.3223571777344	2	496.242201	990.469849	-0.38881	-0.00019294	0.649	0.00032206	0.26019	0.00012912	496.24246110947155	104.82	0.74004	104.24	103.92	104.66	-0.57639					20	14	2	0	0	0	0.028476	1	9697	9697		62.978	17.006	1	9087.4			56790	15117	46846	46888	62171	62171					-0.02576726088000214
TILIIGMNL	9	Unmodified	_TILIIGMNL_					0	0	0			REV__tr|A0A553STN8|A0A553STN8_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_05375PE=3SV=1	REV__tr|A0A553STN8|A0A553STN8_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_05375PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.76715087890625	2	494.298996	986.583439	-0.04636	-2.2915E-05	2.5745	0.0012726	2.5282	0.0012497	494.3001277927325	58.391	1.0038	54.999	54.549	55.553	-3.392					29	19	3	0	0	0	0.027462	1	3815	3815		35.618	0	1	112410	+		56791	30989	46847	46889	62172	62172					0.08961045753392227
TILIIGMNL	9	Unmodified	_TILIIGMNL_					0	0	0			REV__tr|A0A553STN8|A0A553STN8_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_05375PE=3SV=1	REV__tr|A0A553STN8|A0A553STN8_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_05375PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	494.298996	986.583439	-0.23759	-0.00011744	3.312	0.0016371	3.0744	0.0015197	494.3005869601882	57.676	0.84541	54.884	54.477	55.323	-2.792	-0.057386	0.00020731	NaN	35.618	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44264	+		56792	30989	46847	46889							0.08961045753392227
TILIILFAM	9	Unmodified	_TILIILFAM_					0	0	0			REV__ENSG00000173612|ENST00000310357|GPRC6A	REV__ENSG00000173612|ENST00000310357|GPRC6A	MULTI-MSMS	OvCa9_classI_Rep3	3	517.8198852539062	2	517.819564	1033.62458	-3.1809	-0.0016471	2.7662	0.0014324	-0.41471	-0.00021475	517.8208401920543	146.89	1.3501	145.93	145.54	146.89	-0.95947					60	26	3	0	0	0	0.6959	1	12348	12348		19.36	1.0356	1	132640	+		56793	21790	46848	46890	62173	62173					0.10910806792867334
TILIRIARA	9	Unmodified	_TILIRIARA_					0	0	0		ENSG00000184956|ENST00000421673|MUC6	ENSG00000184956|ENST00000421673|MUC6	ENSG00000184956|ENST00000421673|MUC6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.2760620117188	2	513.842751	1025.67095	-0.50786	-0.00026096	-0.51982	-0.00026711	-1.0277	-0.00052807	513.8428479095184	94.183	0.53563	91.715	91.524	92.06	-2.4685					16	10	2	0	0	0	0.027462	1	8219	8219		11.511	0	1	20909			56794	8207	46849	46891	62174	62174					0.15914007739161207
TILKHLQNL	9	Unmodified	_TILKHLQNL_					0	0	0		RALGAPB|p.C811Yfs*8|1|0.28|ENSG00000170471|chr20:38539828-38539829|GC/-|frameshift_variant;RALGAPB|p.D897Efs*7|1|0.04|ENSG00000170471|chr20:38541169-38541169|T/-|frameshift_variant;nc|ENSG00000170471|Q86X10-4|RALGAPB;nc|ENSG00000170471|Q86X10-3|RALGAPB;ENSG00000170471|ENST00000262879|RALGAPB	RALGAPB|p.C811Yfs*8|1|0.28|ENSG00000170471|chr20:38539828-38539829|GC/-|frameshift_variant	RALGAPB|p.C811Yfs*8|1|0.28|ENSG00000170471|chr20:38539828-38539829|GC/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3319091796875	2	540.332216	1078.64988	0.34656	0.00018726	-4.1131	-0.0022225	-3.7666	-0.0020352	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.63422	1	13676	13676		27.882	4.8398	1	342200			56795	7107	46850	46892	62175	62175					0.11369997639667417
TILNPIYSITT	11	Unmodified	_TILNPIYSITT_					0	0	0		ENSG00000104824|ENST00000221419|HNRNPL;nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000568980.1_1_15:34781792-34782686:-|nuORF;HNRNPL-SRRT|2|fusion;HNRNPL-SRRT|1|fusion	ENSG00000104824|ENST00000221419|HNRNPL;HNRNPL-SRRT|2|fusion	ENSG00000104824|ENST00000221419|HNRNPL	MULTI-MSMS	OvCa99_classI_Rep5	1	618.3501586914062	2	618.347729	1234.6809	1.211	0.00074885	1.3117	0.00081106	2.5227	0.0015599	618.3483015028743	138.54	1.2055	138.54	138.11	139.32	0					63	24	4	0	0	0	0.14856	2	16156	16156;16179		86.882	31.38	1	816920			56796	2394;14487	46851	46893	62176;62177	62176					0.07295106163223863
TILPLFFVM	9	Unmodified	_TILPLFFVM_					0	0	0			REV__tr|A0A7D6VWY9|A0A7D6VWY9_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05970PE=3SV=1	REV__tr|A0A7D6VWY9|A0A7D6VWY9_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05970PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	540.831787109375	2	540.811739	1079.60893	-0.46938	-0.00025385	-1.8584	-0.0010051	-2.3278	-0.0012589	540.8117954983726	123.54	0.34296	123.31	123.14	123.48	-0.23193					9	6	3	0	0	0	0.027449	1	11991	11991		40.573	10.069	1	11519	+		56797	31759	46852	46894	62178	62178					0.07230520275834351
TILSKFISKN	10	Unmodified	_TILSKFISKN_					0	0	0			REV__tr|A0A7D6VSE9|A0A7D6VSE9_9CLOTBranched-chainaminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06255PE=4SV=1	REV__tr|A0A7D6VSE9|A0A7D6VSE9_9CLOTBranched-chainaminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06255PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.312255859375	2	575.845156	1149.67576	-0.84513	-0.00048666	2.9774	0.0017145	2.1323	0.0012279	575.8465126416623	99.032	0.15374	97.347	97.27	97.423	-1.685					4	2	2	0	0	0	0.026493	1	6640	6640		45.972	0	1	13020	+		56798	31496	46853	46895	62179	62179					0.10690847091291289
TILTFIPQF	9	Unmodified	_TILTFIPQF_					0	0	0		ENSG00000138722|ENST00000264790|MMRN1;MMRN1|p.S1155Lfs*4|1|0.28|ENSG00000138722|chr4:89953190-89953202|ATTTAGTGCTCAT/-|frameshift_variant	ENSG00000138722|ENST00000264790|MMRN1	ENSG00000138722|ENST00000264790|MMRN1	MULTI-MSMS	OvCa9_classI_Rep2	2	540.30810546875	2	540.310418	1078.60628	-2.1488	-0.001161	-1.0685	-0.00057733	-3.2173	-0.0017384	540.3097600180628	118.45	2.7194	118.3	117.89	120.61	-0.14755					130	54	4	0	0	0	0.36502	1	11388	11388		55.504	4.1688	1	293380			56799	4717	46854	46896	62180	62180					0.07012388142516102
TILTLPTP	8	Unmodified	_TILTLPTP_					0	0	0		KLHDC7A|p.V764I|1|0.33|ENSG00000179023|chr1:18483271-18483271|G/A|missense_variant	KLHDC7A|p.V764I|1|0.33|ENSG00000179023|chr1:18483271-18483271|G/A|missense_variant	KLHDC7A|p.V764I|1|0.33|ENSG00000179023|chr1:18483271-18483271|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	427.2745666503906	2	428.262936	854.51132	1.6667	0.00071379	-2.8807	-0.0012337	-1.214	-0.00051993	428.2616409645205	147.76	0.52731	147.76	147.5	148.03	0					17	10	2	0	0	0	0.028476	1	17276	17276		68.485	0	1	106830			56800	14525	46855	46897	62181	62181					0.0782445467133357
TILVELINK	9	Unmodified	_TILVELINK_					0	0	0		ENSG00000152104|ENST00000366956|PTPN14;PTPN14|p.E276Q|1|0.06|ENSG00000152104|chr1:214394919-214394919|C/G|missense_variant;PTPN14|p.A735Pfs*7|1|0.68|ENSG00000152104|chr1:214383624-214383652|ATGCGGGCCAGGGCCGCCTGCAGCTGGGC/-|frameshift_variant	ENSG00000152104|ENST00000366956|PTPN14	ENSG00000152104|ENST00000366956|PTPN14	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.8123779296875	2	521.828975	1041.6434	-1.2202	-0.00063672	0.29572	0.00015432	-0.92444	-0.0004824	521.8288740981905	118.81	0.64648	118.66	118.38	119.03	-0.14755					18	12	2	0	0	0	0.027462	1	11443	11443		18.324	0	1	21744			56801	5604	46856	46898	62182	62182					0.12424059688282796
TILVKEYKL	9	Unmodified	_TILVKEYKL_					0	0	0			REV__tr|A0A7D6ZH28|A0A7D6ZH28_9CLOTLargeribosomalsubunitproteinuL4OS=ClostridiumintestinaleOX=36845GN=rplDPE=3SV=1	REV__tr|A0A7D6ZH28|A0A7D6ZH28_9CLOTLargeribosomalsubunitproteinuL4OS=ClostridiumintestinaleOX=36845GN=rplDPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.31640625	2	553.844625	1105.6747	1.1444	0.00063382	-0.47791	-0.00026469	0.66649	0.00036913	553.8440904140184	83.393	0.71746	83.393	83.204	83.921	0					40	16	4	0	0	0	0.027462	1	8665	8665		42.396	19.354	1	884090	+		56802	32015	46857	46899	62183	62183					0.12608632722390212
TILVKHLEK	9	Unmodified	_TILVKHLEK_					0	0	0		tr|A0A7D7A2Q6|A0A7D7A2Q6_9CLOTZ1domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09480PE=4SV=1	tr|A0A7D7A2Q6|A0A7D7A2Q6_9CLOTZ1domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09480PE=4SV=1	tr|A0A7D7A2Q6|A0A7D7A2Q6_9CLOTZ1domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09480PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.818603515625	2	540.842416	1079.67028	-0.46057	-0.0002491	-0.2689	-0.00014543	-0.72947	-0.00039453	540.8423318556632	72.531	0.62808	70.131	69.75	70.378	-2.3999					18	11	2	0	0	0	0.027462	1	5855	5855		40.778	27.966	1	13626			56803	36088	46858	46900	62184	62184					0.13363168299474637
TIMAIGLACMV	11	Unmodified	_TIMAIGLACMV_					0	0	0			REV__tr|A0A7D7A1E7|A0A7D7A1E7_9CLOTYitTfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03860PE=4SV=1	REV__tr|A0A7D7A1E7|A0A7D7A1E7_9CLOTYitTfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03860PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.7661743164062	2	561.789623	1121.56469	-0.17053	-9.5801E-05	-3.7937	-0.0021313	-3.9642	-0.0022271	561.7872450131946	42.178	0.34812	42.178	42.024	42.372	0					13	7	2	0	0	0	0.025366	1	2688	2688		35.618	0	1	198760	+		56804	32489	46859	46901	62185	62185					0.008774247956580439
TIMFIVILI	9	Unmodified	_TIMFIVILI_					0	0	0			REV__ENSG00000082996|ENST00000392894|RNF13	REV__ENSG00000082996|ENST00000392894|RNF13	MULTI-SECPEP	OvCa9_classI_Rep3	3	531.3027954101562	2	531.835214	1061.65588	1.6106	0.00085659	2.0973	0.0011154	3.708	0.001972	532.3381753884414	122.22	0.41991	121.19	121.06	121.48	-1.0286					11	7	2	0	0	0	0.027462	1	9389	9389		26.796	0	1	15037	+		56805	17092	46860	46902	62186	62186					0.1275137982695469
TIMLICIA	8	Unmodified	_TIMLICIA_					0	0	0			REV__DNAJB9-DENND5B|1|fusion	REV__DNAJB9-DENND5B|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	439.24786376953125	2	439.247917	876.481282	-0.24789	-0.00010888	0.91802	0.00040324	0.67013	0.00029435	439.2481798597059	51.725	1.6844	48.913	48.203	49.888	-2.8129					75	33	4	0	0	0	0.73288	1	3419	3419		35.201	3.2459	1	208270	+		56806	16318	46861	46903	62187	62187					0.03810056410134166
TIMPWTWW	8	Unmodified	_TIMPWTWW_					0	0	0		ENSG00000164181|ENST00000508821|ELOVL7	ENSG00000164181|ENST00000508821|ELOVL7	ENSG00000164181|ENST00000508821|ELOVL7	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.2625122070312	2	560.767863	1119.52117	1.8323	0.0010275	-1.1532	-0.00064666	0.67916	0.00038085	560.7674559165711	98.336	0.38673	98.336	98.165	98.552	0					13	8	2	0	0	0	0.028476	1	10832	10832		20.482	0	1	410580			56807	6428	46862	46904	62188	62188					-0.033806805949552654
TIMSYFRPI	9	Unmodified	_TIMSYFRPI_					0	0	0		nc|ENSG00000088992|Q96BS2-2|TESC;nc|ENSG00000088992|Q96BS2-3|TESC;ENSG00000088992|ENST00000335209|TESC	nc|ENSG00000088992|Q96BS2-2|TESC	nc|ENSG00000088992|Q96BS2-2|TESC	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.3001708984375	2	564.299527	1126.5845	0.9654	0.00054477	-0.41918	-0.00023654	0.54622	0.00030823	564.2992513368042	123.58	1.2488	122.21	121.9	123.15	-1.3666					37	22	2	0	0	0	0.40667	1	11709	11709		51.335	1.7994	1	161810			56808	1802	46863	46905	62189	62189					0.02627260122289954
TINASSSRSG	10	Unmodified	_TINASSSRSG_					0	0	0		ENSG00000073756|ENST00000367468|PTGS2	ENSG00000073756|ENST00000367468|PTGS2	ENSG00000073756|ENST00000367468|PTGS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.2464294433594	2	490.243795	978.473037	-0.21003	-0.00010296	2.5142	0.0012326	2.3042	0.0011296	490.2450385240117	63.057	3.0011	59.582	59.044	62.045	-3.475					145	61	4	0	0	0	0.55359	1	4411	4411		47.657	5.2612	1	4610600			56809	1500	46864	46906	62190	62190					-0.017060829812635347
TINDAIKTQL	10	Unmodified	_TINDAIKTQL_					0	0	0		ENSG00000216937|ENST00000639629|CCDC7	ENSG00000216937|ENST00000639629|CCDC7	ENSG00000216937|ENST00000639629|CCDC7	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.8179321289062	2	558.816596	1115.61864	0.090881	5.0786E-05	-0.054252	-3.0317E-05	0.036629	2.0469E-05	558.8161517620805	45.974	2.6143	42.901	42.613	45.228	-3.0724					111	50	3	0	0	0	0.42962	1	2470	2470		64.207	2.0999	1	5957700			56810	9215	46865	46907	62191	62191					0.0654537981492922
TINEERSE	8	Unmodified	_TINEERSE_					0	0	0		ENSG00000105464|ENST00000263269|GRIN2D;GRIN2D|p.S691Lfs*18|1|0.08|ENSG00000105464|chr19:48419795-48419795|C/-|frameshift_variant;ENSG00000273079|ENST00000609686|GRIN2B;ENST00000584176.1_1_17:72843434-72846906:-|nuORF;ENSG00000161509|ENST00000293190|GRIN2C;RHPN2-GRIN2D|1|fusion;ENSG00000183454|ENST00000330684|GRIN2A;nc|ENSG00000183454|Q12879-2|GRIN2A	ENSG00000105464|ENST00000263269|GRIN2D;ENST00000584176.1_1_17:72843434-72846906:-|nuORF;RHPN2-GRIN2D|1|fusion;ENSG00000183454|ENST00000330684|GRIN2A	RHPN2-GRIN2D|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	488.7601318359375	2	489.230353	976.446153	-0.28187	-0.0001379	-1.0816	-0.00052914	-1.3634	-0.00066704	489.2295938120213	69.186	0.78141	65.699	65.414	66.195	-3.4871					30	15	3	0	0	0	0.028476	1	5164	5164		51.335	15.717	1	41004			56811	32786;2461;6129;8075	46866	46908	62192	62192					-0.04301191592469422
TINEIKGCIPI	11	Unmodified	_TINEIKGCIPI_					0	0	0			REV__nc|ENSG00000149090|Q6UXH9-3|PAMR1	REV__nc|ENSG00000149090|Q6UXH9-3|PAMR1	MULTI-SECPEP	OvCa9_classI_Rep2	2	400.90289306640625	3	400.893408	1199.65839	2.0669	0.0008286	-4.3035	-0.0017252	-2.2366	-0.00089665	400.892062291507	82.703	0.3649	81.104	80.854	81.219	-1.5988					8	6	2	0	0	0	0.025702	1	7051	7051		84.817	10.976	1	12898	+		56812	20142	46867	46909	62193	62193					0.0665518349399008
TINEIKGCIPI	11	Unmodified	_TINEIKGCIPI_					0	0	0			REV__nc|ENSG00000149090|Q6UXH9-3|PAMR1	REV__nc|ENSG00000149090|Q6UXH9-3|PAMR1	MULTI-MATCH	OvCa9_classI_Rep3	3		3	400.893408	1199.65839	0.032249	1.2929E-05	-4.2931	-0.0017211	-4.2609	-0.0017082	400.8913242261111	83.496	0.13821	81.235	81.164	81.302	-2.261	0.090322	9.7458E-05	NaN	84.817	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12734	+		56813	20142	46867	46909							0.0665518349399008
TINGHNAEV	9	Unmodified	_TINGHNAEV_					0	0	0		ENSG00000122566|ENST00000618183|HNRNPA2B1;ENST00000463181.5_1_7:26232138-26237376:-|nuORF;nc|ENSG00000122566|P22626|HNRNPA2B1;ENST00000495810.1_1_7:26235422-26236427:-|nuORF	ENSG00000122566|ENST00000618183|HNRNPA2B1	ENSG00000122566|ENST00000618183|HNRNPA2B1	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.73681640625	2	477.735606	953.456658	-0.80702	-0.00038554	0.46184	0.00022064	-0.34518	-0.0001649	477.7357549598144	44.477	2.0109	41.438	41.106	43.117	-3.0385					107	38	4	0	0	0	0.13504	1	2210	2210		87.696	5.3914	1	902910			56814	3541	46868	46910	62194	62194					-0.021931641473884156
TINKIRTIV	9	Unmodified	_TINKIRTIV_					0	0	0		tr|A0A7D6VT53|A0A7D6VT53_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_15640PE=4SV=1	tr|A0A7D6VT53|A0A7D6VT53_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_15640PE=4SV=1	tr|A0A7D6VT53|A0A7D6VT53_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_15640PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.3436889648438	2	529.340041	1056.66553	0.34687	0.00018361	3.8744	0.0020509	4.2212	0.0022345	529.3419281598773	139.64	1.5853	138.15	137.78	139.37	-1.4952					72	30	3	0	0	0	0.57283	1	13652	13652		35.152	8.4591	1	57433			56815	35087	46869	46911	62195	62195					0.13946284156691036
TINNLTINI	9	Unmodified	_TINNLTINI_					0	0	0		nc|ENSG00000155975|Q8NEZ2-3|VPS37A;ENSG00000155975|ENST00000324849|VPS37A;ENST00000520639.1_1_5:153873211-153873349:+|nuORF	nc|ENSG00000155975|Q8NEZ2-3|VPS37A	nc|ENSG00000155975|Q8NEZ2-3|VPS37A	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7654113769531	2	508.292756	1014.57096	1.3933	0.00070819	0.85943	0.00043684	2.2527	0.001145	508.2930175151251	93.478	0.41023	93.478	93.346	93.757	0					13	9	2	0	0	0	0.027353	1	10177	10177		71.877	3.0313	1	899100			56816	5814	46870	46912	62196	62196					0.06425725614712974
TINNLTINI	9	Unmodified	_TINNLTINI_					0	0	0		nc|ENSG00000155975|Q8NEZ2-3|VPS37A;ENSG00000155975|ENST00000324849|VPS37A;ENST00000520639.1_1_5:153873211-153873349:+|nuORF	nc|ENSG00000155975|Q8NEZ2-3|VPS37A	nc|ENSG00000155975|Q8NEZ2-3|VPS37A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	508.292756	1014.57096	-0.6165	-0.00031336	4.9729	0.0025277	4.3564	0.0022143	508.2947298514639	94.695	0.34199	93.596	93.509	93.851	-1.0995	0.0092575	0.0035406	NaN	71.877	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30865			56817	5814	46870	46912							0.06425725614712974
TINNLTINI	9	Unmodified	_TINNLTINI_					0	0	0		nc|ENSG00000155975|Q8NEZ2-3|VPS37A;ENSG00000155975|ENST00000324849|VPS37A;ENST00000520639.1_1_5:153873211-153873349:+|nuORF	nc|ENSG00000155975|Q8NEZ2-3|VPS37A	nc|ENSG00000155975|Q8NEZ2-3|VPS37A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	508.292756	1014.57096	-1.0063	-0.00051151	1.4762	0.00075034	0.46987	0.00023883	508.29322680261765	95.555	0.34853	93.686	93.492	93.84	-1.8685	0.099558	-1.405E-05	NaN	71.877	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44568			56818	5814	46870	46912							0.06425725614712974
TINNSKPREN	10	Unmodified	_TINNSKPREN_					0	0	0		ENST00000600817.5_1_19:43679971-43690557:-|nuORF;ENSG00000204941|ENST00000342951|PSG5	ENST00000600817.5_1_19:43679971-43690557:-|nuORF	ENST00000600817.5_1_19:43679971-43690557:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	586.803466796875	2	586.804551	1171.59455	1.1737	0.00068875	-1.7668	-0.0010368	-0.59311	-0.00034804	586.8033571564652	109.8	1.0279	109.8	109.33	110.35	0					39	22	3	0	0	0	0.49558	1	12446	12446		54.776	0	1	701860			56819	9038	46871	46913	62197	62197					0.015615393812367984
TINPDHTSL	9	Unmodified	_TINPDHTSL_					0	0	0			REV__ENST00000465184.1_1_7:94294121-94298055:+|nuORF	REV__ENST00000465184.1_1_7:94294121-94298055:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.2885437011719	2	499.251089	996.487624	-1.348	-0.00067298	0.33026	0.00016488	-1.0177	-0.0005081	499.2511439275584	91.893	1.0518	89.869	89.584	90.636	-2.0241					42	21	4	0	0	0	0.027433	1	5756	5756		54.776	6.8607	1	371790	+		56820	23456	46872	46914	62198	62198					-0.010760108331282936
TINPDHTSL	9	Unmodified	_TINPDHTSL_					0	0	0			REV__ENST00000465184.1_1_7:94294121-94298055:+|nuORF	REV__ENST00000465184.1_1_7:94294121-94298055:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	499.251089	996.487624	0.89947	0.00044906	-1.0984	-0.00054836	-0.19888	-9.9292E-05	499.250406844661	91.234	1.1622	89.998	89.689	90.851	-1.2355	0.057817	-0.00064668	NaN	54.776	56	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	184380	+		56821	23456	46872	46914							-0.010760108331282936
TINPDHTSL	9	Unmodified	_TINPDHTSL_					0	0	0			REV__ENST00000465184.1_1_7:94294121-94298055:+|nuORF	REV__ENST00000465184.1_1_7:94294121-94298055:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	499.251089	996.487624	-1.1306	-0.00056443	0.76602	0.00038244	-0.36454	-0.000182	499.2513631947003	92.478	1.31	89.935	89.618	90.928	-2.5425	-0.0050643	0.0012149	NaN	54.776	58	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	315180	+		56822	23456	46872	46914							-0.010760108331282936
TINPLLTPDS	10	Unmodified	_TINPLLTPDS_					0	0	0			REV__nc|ENSG00000168959|P41594-3|GRM5	REV__nc|ENSG00000168959|P41594-3|GRM5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.8304443359375	2	535.790047	1069.56554	-1.5011	-0.00080425	-3.3822	-0.0018122	-4.8833	-0.0026164	536.2897502404477	55.795	0.50845	52.5	52.26	52.769	-3.2944					12	9	2	0	0	0	0.026915	1	3547	3547		35.618	0	1	11868	+		56823	21422	46873	46915	62199	62199					0.033540020322334385
TINQLLPLW	9	Unmodified	_TINQLLPLW_					0	0	0			REV__LRRIQ1|p.E1195Kfs*10|1|0.44|ENSG00000133640|chr12:85124094-85124094|A/-|frameshift_variant	REV__LRRIQ1|p.E1195Kfs*10|1|0.44|ENSG00000133640|chr12:85124094-85124094|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.29150390625	2	549.321317	1096.62808	-0.94177	-0.00051733	0.89321	0.00049066	-0.048562	-2.6676E-05	549.3210929149001	69.772	0.53149	66.291	66.057	66.589	-3.4812					14	10	2	0	0	0	0.027462	1	5252	5252		30.504	8.5438	1	20402	+		56824	19151	46874	46916	62200	62200					0.0836319289110179
TINSKGQNNL	10	Unmodified	_TINSKGQNNL_					0	0	0			REV__tr|A0A553SUI9|A0A553SUI9_NIACIAlpha/betahydrolaseOS=NialliacirculansOX=1397GN=CEQ21_00430PE=4SV=1	REV__tr|A0A553SUI9|A0A553SUI9_NIACIAlpha/betahydrolaseOS=NialliacirculansOX=1397GN=CEQ21_00430PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.2774658203125	2	544.78837	1087.56219	0.84501	0.00046035	-4.0877	-0.0022269	-3.2427	-0.0017666	544.7843807515933	151.15	0.2542	151.15	151.04	151.3	0					7	4	2	0	0	0	0.026734	1	17685	17685		39.253	0	1	20307	+		56825	31084	46875	46917	62201	62201					0.021907519782416784
TINYRLGIL	9	Unmodified	_TINYRLGIL_					0	0	0		nc|ENSG00000165246|Q8NFZ3|NLGN4Y;ENSG00000165246|ENST00000684976|NLGN4Y;nc|ENSG00000165246|Q8NFZ3-2|NLGN4Y;ENSG00000146938|ENST00000381095|NLGN4X;nc|ENSG00000146938|Q8N0W4-2|NLGN4X;nc|ENSG00000165246|Q8NFZ3-4|NLGN4Y;ENST00000476359.1_1_Y:16733999-16863586:+|nuORF;nc|ENSG00000165246|Q8NFZ3-3|NLGN4Y	nc|ENSG00000165246|Q8NFZ3|NLGN4Y	nc|ENSG00000165246|Q8NFZ3|NLGN4Y	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8164672851562	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.60342	1	11574	11574		31.53	1.0262	1	178650			56826	6540	46876	46918	62202	62202					0.09498308748334239
TIPFKSLTNL	10	Unmodified	_TIPFKSLTNL_					0	0	0			REV__ENSG00000183549|ENST00000331849|ACSM5	REV__ENSG00000183549|ENST00000331849|ACSM5	MULTI-MSMS	OvCa9_classI_Rep3	3	567.329345703125	2	567.331882	1132.64921	-3.474	-0.0019709	-0.21845	-0.00012393	-3.6925	-0.0020949	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.64697	1	12228	12228		36.447	0.82846	1	458690	+		56827	22369	46877	46919	62203	62203					0.08819158199935373
TIPIEALLAI	10	Unmodified	_TIPIEALLAI_					0	0	0			REV__tr|A0A553SH02|A0A553SH02_NIACIUDP-N-acetylenolpyruvoylglucosaminereductaseOS=NialliacirculansOX=1397GN=murBPE=3SV=1	REV__tr|A0A553SH02|A0A553SH02_NIACIUDP-N-acetylenolpyruvoylglucosaminereductaseOS=NialliacirculansOX=1397GN=murBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.8703002929688	2	527.33135	1052.64815	-1.9168	-0.0010108	2.0588	0.0010857	0.14204	7.4904E-05	527.3323585126453	120.09	0.73392	118.74	118.35	119.08	-1.3444					22	12	2	0	0	0	0.026871	1	11244	11244		21.96	0	1	21260	+		56828	29758	46878	46920	62204	62204					0.12392943831036973
TIPIEALLAI	10	Unmodified	_TIPIEALLAI_					0	0	0			REV__tr|A0A553SH02|A0A553SH02_NIACIUDP-N-acetylenolpyruvoylglucosaminereductaseOS=NialliacirculansOX=1397GN=murBPE=3SV=1	REV__tr|A0A553SH02|A0A553SH02_NIACIUDP-N-acetylenolpyruvoylglucosaminereductaseOS=NialliacirculansOX=1397GN=murBPE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	527.33135	1052.64815	1.1919	0.0006285	-0.8853	-0.00046685	0.30655	0.00016166	527.3308175506705	119.16	0.37596	119.16	118.96	119.33	0	0.31052	-0.0025788	NaN	10.265	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85882	+		56829	29758	46878	46920							0.12392943831036973
TIPSGGTKKP	10	Unmodified	_TIPSGGTKKP_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.8026428222656	2	493.287474	984.560395	0.49286	0.00024312	-0.67014	-0.00033057	-0.17728	-8.7452E-05	493.28695045700823	60.649	1.1438	57.219	56.7	57.844	-3.43					26	22	2	0	0	0	0.026577	1	4178	4178		49.536	0	1	60055	+		56830	28942;32737	46879	46921	62205	62205					0.06749742960278127
TIPSRLHMT	9	Unmodified	_TIPSRLHMT_					0	0	0			REV__ENSG00000111817|ENST00000644252|DSE	REV__ENSG00000111817|ENST00000644252|DSE	MULTI-MSMS	OvCa9_classI_Rep3	3	528.2846069335938	2	528.286951	1054.55935	-2.691	-0.0014216	-1.8936	-0.0010003	-4.5845	-0.0024219	528.2858404974387	141.55	1.2874	140.54	140.14	141.43	-1.0106					66	25	4	0	0	0	0.63422	1	11726	11726		27.882	1.1893	1	289450	+		56831	18062	46880	46922	62206	62206					0.034252053197405985
TIPTKSTQGPY	11	Unmodified	_TIPTKSTQGPY_					0	0	0			REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-MSMS	OvCa9_classI_Rep3	3	596.8161010742188	2	596.814053	1191.61355	3.1335	0.0018701	0.67913	0.00040531	3.8127	0.0022754	596.8143723057162	57.305	2.9299	54.154	53.228	56.158	-3.1504					108	83	2	0	0	0	0.72491	1	1741	1741		16.717	1.0756	1	40554	+		56832	20958	46881	46923	62207	62207					0.02541075952308347
TIQADTPAL	9	Unmodified	_TIQADTPAL_					0	0	0		nc|ENSG00000125686|Q15648-3|MED1;ENSG00000125686|ENST00000300651|MED1	nc|ENSG00000125686|Q15648-3|MED1	nc|ENSG00000125686|Q15648-3|MED1	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.2525329589844	2	465.250557	928.486562	-0.15367	-7.1495E-05	1.4304	0.00066551	1.2768	0.00059402	465.25113265856197	57.714	1.1138	54.369	53.985	55.098	-3.3449					56	21	4	0	0	0	0.48324	1	3757	3757		44.117	1.7207	1	803250			56833	3722	46882	46924	62208	62208					0.019457747979345186
TIQADTPAL	9	Unmodified	_TIQADTPAL_					0	0	0		nc|ENSG00000125686|Q15648-3|MED1;ENSG00000125686|ENST00000300651|MED1	nc|ENSG00000125686|Q15648-3|MED1	nc|ENSG00000125686|Q15648-3|MED1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	465.250557	928.486562	-0.75419	-0.00035089	2.0843	0.0009697	1.3301	0.00061882	465.25143402911146	57.207	1.1919	54.415	53.981	55.173	-2.792	0.022861	0.00034228	NaN	44.117	43	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135050			56834	3722	46882	46924							0.019457747979345186
TIQAVKEYK	9	Unmodified	_TIQAVKEYK_					0	0	0		tr|A0A553SGS4|A0A553SGS4_NIACItRNAN6-adenosinethreonylcarbamoyltransferaseOS=NialliacirculansOX=1397GN=tsaDPE=3SV=1	tr|A0A553SGS4|A0A553SGS4_NIACItRNAN6-adenosinethreonylcarbamoyltransferaseOS=NialliacirculansOX=1397GN=tsaDPE=3SV=1	tr|A0A553SGS4|A0A553SGS4_NIACItRNAN6-adenosinethreonylcarbamoyltransferaseOS=NialliacirculansOX=1397GN=tsaDPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.3015747070312	2	540.308406	1078.60226	2.2156	0.0011971	0.75714	0.00040909	2.9727	0.0016062	540.3086725512119	130.55	1.0325	129.07	128.81	129.84	-1.4779					48	20	3	0	0	0	0.027462	1	12527	12527		27.882	0	1	45365			56835	33188	46883	46925	62209	62209					0.06610298648797652
TIQDAPHPL	9	Unmodified	_TIQDAPHPL_					0	0	0		nc|ENSG00000178222|Q495C1-6|RNF212;nc|ENSG00000178222|Q495C1-4|RNF212	nc|ENSG00000178222|Q495C1-6|RNF212	nc|ENSG00000178222|Q495C1-6|RNF212	MULTI-MSMS	OvCa9_classI_Rep3	3	496.2657470703125	2	496.263999	990.513445	1.8637	0.0009249	1.0785	0.0005352	2.9422	0.0014601	496.2643848501877	59.438	2.028	56.339	55.347	57.375	-3.0993					83	55	2	0	0	0	0.59259	1	1980	1980		32.812	3.6629	1	32593			56836	15196	46884	46926	62210	62210					0.01780883409139733
TIQILQDDDGD	11	Unmodified	_TIQILQDDDGD_					0	0	0			REV__ENSG00000138823|ENST00000265517|MTTP	REV__ENSG00000138823|ENST00000265517|MTTP	MULTI-SECPEP	OvCa99_classI_Rep5	1	615.8679809570312	2	616.785689	1231.55683	2.1399	0.0013199	2.5898	0.0015973	4.7296	0.0029172	617.2885348044193	106.58	0.31189	106.58	106.41	106.72	0					11	6	2	0	0	0	0.025814	1	12006	12006		33.922	13.925	1	115490	+		56837	19580	46885	46927	62211	62211					-0.049690163949208
TIQRCRKH	8	Unmodified	_TIQRCRKH_					0	0	0		ENST00000569682.5_1_15:30871505-30892352:+|nuORF;ENST00000566793.5_1_15:30865117-30888965:+|nuORF;ENST00000570221.5_1_15:30865009-30875097:+|nuORF;ENST00000397827.7_1_15:30672592-30685664:-|nuORF	ENST00000569682.5_1_15:30871505-30892352:+|nuORF	ENST00000569682.5_1_15:30871505-30892352:+|nuORF	MSMS	OvCa9_classI_Rep2	2	521.2941284179688	2	521.290359	1040.56617	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.07	1	124.83	124.33	125.33	-0.2359								0	0	0	0.30129	1	12175	12175		24.203	0	1				56838	11355	46886	46928	62212	62212					0.04750562990943763
TIQRTVQQF	9	Unmodified	_TIQRTVQQF_					0	0	0		ENST00000518279.5_1_5:72112751-72147067:+|nuORF	ENST00000518279.5_1_5:72112751-72147067:+|nuORF	ENST00000518279.5_1_5:72112751-72147067:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	561.3516235351562	2	560.809105	1119.60366	0.35994	0.00020186	1.1638	0.00065269	1.5238	0.00085455	560.8089523072294	53.259	0.70551	50.051	49.698	50.404	-3.208					22	13	2	0	0	0	0.027462	1	3233	3233		40.778	3.6191	1	31522			56839	13069	46887	46929	62213	62213					0.04863932737566756
TIQSDSIID	9	Unmodified	_TIQSDSIID_					0	0	0			REV__ENSG00000111450|ENST00000392373|STX2	REV__ENSG00000111450|ENST00000392373|STX2	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.3120422363281	2	496.250754	990.486955	-1.4301	-0.0007097	0.012181	6.0449E-06	-1.4179	-0.00070366	496.2497090241965	64.079	0.56256	64.079	63.854	64.417	0					22	13	3	0	0	0	0.027462	1	5824	5824		39.253	0	1	157490	+		56840	18034	46888	46930	62214	62214					-0.00866850272859665
TIRGITSNAI	10	Unmodified	_TIRGITSNAI_					0	0	0		tr|A0A7D6ZEP6|A0A7D6ZEP6_9CLOTStageIIIsporulationproteinAEOS=ClostridiumintestinaleOX=36845GN=spoIIIAEPE=4SV=1	tr|A0A7D6ZEP6|A0A7D6ZEP6_9CLOTStageIIIsporulationproteinAEOS=ClostridiumintestinaleOX=36845GN=spoIIIAEPE=4SV=1	tr|A0A7D6ZEP6|A0A7D6ZEP6_9CLOTStageIIIsporulationproteinAEOS=ClostridiumintestinaleOX=36845GN=spoIIIAEPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3033447265625	2	523.303655	1044.59276	-0.69596	-0.0003642	0.54848	0.00028702	-0.14748	-7.7179E-05	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.64697	1	13906	13906		36.447	0.82846	1	130240			56841	35485	46889	46931	62215	62215					0.07224530363282611
TIRHSLSL	8	Unmodified	_TIRHSLSL_					0	0	0			REV__ENST00000454264.6_1_1:204506560-204506620:+|nuORF	REV__ENST00000454264.6_1_1:204506560-204506620:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.7989196777344	2	463.774534	925.534515	-1.314	-0.00060938	2.4416	0.0011323	1.1276	0.00052296	463.7753359805528	71.676	1.1732	68.219	67.776	68.949	-3.4563					51	23	3	0	0	0	0.028476	1	5553	5553		42.396	0	1	178400	+		56842	25998	46890	46932	62216	62216					0.0687689350867231
TIRKTLPWL	9	Unmodified	_TIRKTLPWL_					0	0	0		ENSG00000019485|ENST00000683152|PRDM11	ENSG00000019485|ENST00000683152|PRDM11	ENSG00000019485|ENST00000683152|PRDM11	MULTI-MSMS	OvCa9_classI_Rep3	3	564.3508911132812	2	564.350409	1126.68626	-0.90795	-0.0005124	0.67664	0.00038186	-0.23131	-0.00013054	564.3506646111761	134.7	0.74165	133.58	133.31	134.05	-1.1226					28	14	3	0	0	0	0.56889	1	10884	10884		35.618	10.044	1	39657			56843	1018	46891	46933	62217	62217					0.12798874536383664
TIRKYYKHL	9	Unmodified	_TIRKYYKHL_					0	0	0		L1PA6_dup2267|chr6:2299837-2303022:+|1.5111882528479883|0.3006554191737456|2.33|429.0|1|1|sense	L1PA6_dup2267|chr6:2299837-2303022:+|1.5111882528479883|0.3006554191737456|2.33|429.0|1|1|sense	L1PA6_dup2267|chr6:2299837-2303022:+|1.5111882528479883|0.3006554191737456|2.33|429.0|1|1|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3550415039062	2	611.358765	1220.70298	-2.725	-0.001666	-1.8334	-0.0011209	-4.5584	-0.0027868	611.3575283211214	150.83	4.6872	149.39	148.02	152.71	-1.4344					404	109	6	0	0	0	0.63422	1	14921	14921		27.882	1.1893	1	435030			56844	14716	46892	46934	62218	62218					0.10145375422325742
TIRSLRKSFAS	11	Unmodified	_TIRSLRKSFAS_					0	0	0		ENSG00000157152|ENST00000621198|SYN2;ENSG00000008056|ENST00000295987|SYN1	ENSG00000157152|ENST00000621198|SYN2	ENSG00000157152|ENST00000621198|SYN2	MULTI-MSMS	OvCa9_classI_Rep2	2	633.368896484375	2	633.369861	1264.72517	-4.5141	-0.0028591	3.4388	0.002178	-1.0753	-0.00068108	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.72477	1	15553	15553		18.531	4.3939	1	369460			56845	5877	46893	46935	62219	62219					0.10339555100085818
TIRYGVIPDV	10	Unmodified	_TIRYGVIPDV_					0	0	0			REV__nc|ENSG00000111799|Q99715-4|COL12A1	REV__nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-MSMS	OvCa9_classI_Rep2	2	566.820556640625	2	566.821681	1131.62881	-0.081433	-4.6158E-05	-0.42243	-0.00023944	-0.50386	-0.0002856	566.8213564088927	107.28	1.2705	106.97	106.62	107.89	-0.30836					74	25	4	0	0	0	0.53807	1	10033	10033		49.536	0	1	533140	+		56846	18060	46894	46936	62220	62220					0.06825987540128153
TIRYPDPLI	9	Unmodified	_TIRYPDPLI_					0	0	0		ENSG00000280969|ENST00000629237|RPS4Y2;ENSG00000198034|ENST00000316084|RPS4X	ENSG00000280969|ENST00000629237|RPS4Y2	ENSG00000280969|ENST00000629237|RPS4Y2	MULTI-MSMS	OvCa99_classI_Rep5	1	544.31298828125	2	544.310949	1086.60735	-2.4536	-0.0013355	0.43041	0.00023428	-2.0232	-0.0011012	544.3111621306882	104.24	0.92796	104.24	103.77	104.7	0					48	21	4	0	0	0	0.070405	3	11675	11652;11675;11694		107.01	19.253	1	4223900			56847	8774	46895	46937	62221;62222;62223	62222					0.06750602511419856
TISFEGCMAQI	11	Unmodified	_TISFEGCMAQI_					0	0	0		ENSG00000155249|ENST00000641172|OR4K1	ENSG00000155249|ENST00000641172|OR4K1	ENSG00000155249|ENST00000641172|OR4K1	MULTI-MSMS	OvCa9_classI_Rep2	2	600.2720947265625	2	600.275392	1198.53623	-5.4228	-0.0032552	-0.30425	-0.00018263	-5.7271	-0.0034378	600.2750319043287	159.18	1.1999	158.96	158.63	159.83	-0.22697					79	23	5	0	0	0	0.71191	1	16161	16161		25.574	2.5316	1	203880			56848	5773	46896	46938	62224	62224					-0.0550960157991085
TISFEIWLM	9	Oxidation (M)	_TISFEIWLM(Oxidation (M))_		TISFEIWLM(1)		TISFEIWLM(56)	0	0	1		tr|A0A7D6VXX3|A0A7D6VXX3_9CLOTYcxBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14365PE=4SV=1	tr|A0A7D6VXX3|A0A7D6VXX3_9CLOTYcxBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14365PE=4SV=1	tr|A0A7D6VXX3|A0A7D6VXX3_9CLOTYcxBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14365PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.2901000976562	2	578.291368	1154.56818	-7.0215	-0.0040605	4.0307	0.0023309	-2.9908	-0.0017295	578.2935937226971	160.38	4.1596	158.77	158.05	162.21	-1.6101					391	105	5	0	0	0	0.36502	1	16077	16077		55.504	6.0627	1	1912500			56849	35305	46897	46939	62225	62225		773			-0.002918658344697178
TISGEYPCGL	10	Unmodified	_TISGEYPCGL_					0	0	0			REV__nc|ENSG00000146151|Q8TB92|HMGCLL1	REV__nc|ENSG00000146151|Q8TB92|HMGCLL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.3118286132812	2	520.241875	1038.4692	1.9579	0.0010186	-2.7196	-0.0014149	-0.7618	-0.00039632	520.2410185589779	80.276	0.55373	80.276	80.148	80.702	0					19	12	2	0	0	0	0.026822	1	8230	8230		30.504	0	1	557940	+		56850	19997	46898	46940	62226	62226					-0.04849888799344626
TISIPPSGA	9	Unmodified	_TISIPPSGA_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	421.5767517089844	2	421.734543	841.454533	-0.49021	-0.00020674	0.54381	0.00022934	0.053598	2.2604E-05	421.734578678991	59.487	0.5739	59.487	59.228	59.802	0					19	14	2	0	0	0	0.027462	1	5142	5142		12.207	0	1	461760	+		56851	28942;32737	46899	46941	62227	62227					0.027464071148074254
TISKIIHLV	9	Unmodified	_TISKIIHLV_					0	0	0		tr|A0A553SRK4|A0A553SRK4_NIACICd(2+)-exportingATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	tr|A0A553SRK4|A0A553SRK4_NIACICd(2+)-exportingATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	tr|A0A553SRK4|A0A553SRK4_NIACICd(2+)-exportingATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.2793579101562	2	512.331685	1022.64882	0.28193	0.00014444	-0.9008	-0.00046151	-0.61886	-0.00031706	512.3307784678501	113.23	0.68526	111.78	111.56	112.24	-1.4461					19	13	2	0	0	0	0.027462	1	10479	10479		24.203	11.996	1	29089			56852	34272	46900	46942	62228	62228					0.13839783270771022
TISKMALFRK	10	Unmodified	_TISKMALFRK_					0	0	0			REV__STPG2|p.P208A|1|0.08|ENSG00000163116|chr4:97981309-97981309|G/C|missense_variant	REV__STPG2|p.P208A|1|0.08|ENSG00000163116|chr4:97981309-97981309|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8560180664062	2	597.855001	1193.69545	-1.9041	-0.0011384	4.0724	0.0024347	2.1683	0.0012963	597.8573316932594	144.83	3.9651	143.86	141.71	145.68	-0.97301					192	79	4	0	0	0	0.83835	1	12014	12014		14.137	0.68308	1	187110	+		56853	29463	46901	46943	62229	62229					0.10634899830392897
TISKMALFRK	10	Unmodified	_TISKMALFRK_					0	0	0			REV__STPG2|p.P208A|1|0.08|ENSG00000163116|chr4:97981309-97981309|G/C|missense_variant	REV__STPG2|p.P208A|1|0.08|ENSG00000163116|chr4:97981309-97981309|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.855224609375	2	597.855001	1193.69545	-1.5377	-0.00091935	3.8871	0.0023239	2.3493	0.0014045	597.8570606153338	148.28	4.8676	146.85	145.38	150.25	-1.435					291	102	5	0	0	0	0.74374	1	14477	14477		25.574	2.5316	1	767860	+		56854	29463	46901	46943	62230	62230					0.10634899830392897
TISKVLLSI	9	Unmodified	_TISKVLLSI_					0	0	0		ENST00000511691.1_1_5:138980019-139003047:+|nuORF;MATR3-UBE2D2|1|fusion;MATR3-UBE2D2|2|fusion;MATR3-UBE2D2|7|fusion;MATR3-UBE2D2|4|fusion;MATR3-UBE2D2|3|fusion;MATR3-UBE2D2|5|fusion;nc|ENSG00000131508|P62837-2|UBE2D2;MATR3-UBE2D2|6|fusion;nc|ENSG00000109332|P61077-3|UBE2D3;nc|ENSG00000109332|P61077-2|UBE2D3;ENSG00000109332|ENST00000453744|UBE2D3;ENSG00000131508|ENST00000398733|UBE2D2;ENST00000475680.5_1_3:23852460-23932094:+|nuORF;nc|ENSG00000170142|P51965-2|UBE2E1;nc|ENSG00000170142|P51965-3|UBE2E1;ENSG00000170142|ENST00000306627|UBE2E1;ENSG00000182247|ENST00000396703|UBE2E2;ENSG00000170035|ENST00000410062|UBE2E3;ENST00000493707.1_1_3:23907959-23932094:+|nuORF;chr2:180980546-180980942|416|11.89|0.09|7.01|+|ENST00000602479|UBE2E3,UBE2E3;RAB11FIP5-UBE2E3|1|fusion	ENST00000511691.1_1_5:138980019-139003047:+|nuORF;RAB11FIP5-UBE2E3|1|fusion	RAB11FIP5-UBE2E3|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	487.319091796875	2	487.318243	972.621933	1.5885	0.00077411	0.66403	0.00032359	2.2525	0.0010977	487.31843476783564	109.97	2.1463	109.97	109.46	111.6	0					108	47	3	0	0	0	0.0070314	3	12456	12456;12479;12506		185.55	59.736	1	1616700			56855	15536;2709	46902	46944	62231;62232;62233	62231					0.13452674659572494
TISKYLLP	8	Unmodified	_TISKYLLP_					0	0	0		tr|A0A553SLI6|A0A553SLI6_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_20580PE=4SV=1	tr|A0A553SLI6|A0A553SLI6_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_20580PE=4SV=1	tr|A0A553SLI6|A0A553SLI6_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_20580PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.7995300292969	2	467.784036	933.553519	-0.10343	-4.8384E-05	0.10069	4.7103E-05	-0.0027396	-1.2816E-06	467.7839555112241	104.73	1.1236	102.61	102.27	103.39	-2.1192					40	21	2	0	0	0	0.028476	1	9484	9484		53.351	0	1	133980			56856	33728	46903	46945	62234	62234					0.08408430079703066
TISLTAFLFIL	11	Unmodified	_TISLTAFLFIL_					0	0	0		ENSG00000103042|ENST00000219320|SLC38A7;nc|ENSG00000103042|Q9NVC3-2|SLC38A7;ENST00000562149.5_1_16:58705998-58714030:-|nuORF	ENSG00000103042|ENST00000219320|SLC38A7	ENSG00000103042|ENST00000219320|SLC38A7	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8682250976562	2	619.873382	1237.73221	-2.7857	-0.0017268	-3.6209	-0.0022445	-6.4066	-0.0039713	619.8709153162803	147.4	3.9416	146.45	144.36	148.3	-0.9512					241	78	4	0	0	0	0.72459	1	12397	12397		20.947	1.587	1	225770			56857	2275	46904	46946	62235	62235					0.12285474927944051
TISRSPKTV	9	Unmodified	_TISRSPKTV_					0	0	0			REV__nc|ENSG00000151490|Q16827-5|PTPRO	REV__nc|ENSG00000151490|Q16827-5|PTPRO	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.7441711425781	2	494.792924	987.571294	-0.94903	-0.00046957	3.5819	0.0017723	2.6329	0.0013027	494.79452704028864	71.71	1.7534	68.254	67.874	69.628	-3.4563					53	35	3	0	0	0	0.027433	1	5585	5585		45.972	9.5255	1	116350	+		56858	20236	46905	46947	62236	62236					0.07701145334578996
TISSVHGLN	9	Unmodified	_TISSVHGLN_					0	0	0		AGTPBP1|p.Y651Ifs*14|1|0.12|ENSG00000135049|chr9:85632726-85632726|A/-|frameshift_variant;nc|ENSG00000135049|Q9UPW5-2|AGTPBP1;ENSG00000135049|ENST00000357081|AGTPBP1;nc|ENSG00000135049|Q9UPW5-3|AGTPBP1	AGTPBP1|p.Y651Ifs*14|1|0.12|ENSG00000135049|chr9:85632726-85632726|A/-|frameshift_variant	AGTPBP1|p.Y651Ifs*14|1|0.12|ENSG00000135049|chr9:85632726-85632726|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.7883605957031	2	464.248349	926.482145	-0.59208	-0.00027487	0.47288	0.00021954	-0.1192	-5.5338E-05	464.24844095410305	52.144	1.354	48.936	48.59	49.944	-3.208					54	26	4	0	0	0	0.027343	1	3219	3219		58.782	11.125	1	253480			56859	51	46906	46948	62237	62237					0.015963103750436858
TISSYFNSI	9	Unmodified	_TISSYFNSI_					0	0	0		tr|A0A7D6VZL8|A0A7D6VZL8_9CLOTPilusassemblyproteinPilMOS=ClostridiumintestinaleOX=36845GN=pilMPE=4SV=1	tr|A0A7D6VZL8|A0A7D6VZL8_9CLOTPilusassemblyproteinPilMOS=ClostridiumintestinaleOX=36845GN=pilMPE=4SV=1	tr|A0A7D6VZL8|A0A7D6VZL8_9CLOTPilusassemblyproteinPilMOS=ClostridiumintestinaleOX=36845GN=pilMPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.7877807617188	2	516.25584	1030.49713	0.10357	5.3471E-05	-3.7876	-0.0019554	-3.6841	-0.0019019	516.2539931551993	78.197	0.40231	75.844	75.596	75.998	-2.3527					9	7	2	0	0	0	0.027402	1	4153	4153		56.721	8.8055	1	11161			56860	35362	46907	46949	62238	62238					-0.016902425476018834
TISSYFNSI	9	Unmodified	_TISSYFNSI_					0	0	0		tr|A0A7D6VZL8|A0A7D6VZL8_9CLOTPilusassemblyproteinPilMOS=ClostridiumintestinaleOX=36845GN=pilMPE=4SV=1	tr|A0A7D6VZL8|A0A7D6VZL8_9CLOTPilusassemblyproteinPilMOS=ClostridiumintestinaleOX=36845GN=pilMPE=4SV=1	tr|A0A7D6VZL8|A0A7D6VZL8_9CLOTPilusassemblyproteinPilMOS=ClostridiumintestinaleOX=36845GN=pilMPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7890014648438	2	516.25584	1030.49713	-0.287	-0.00014816	-3.8962	-0.0020115	-4.1832	-0.0021596	516.2533767884507	78.923	0.28558	76.171	76.085	76.37	-2.7514					6	5	2	0	0	0	0.027459	1	6394	6394		52.937	3.4952	1	12228			56861	35362	46907	46949	62239	62239					-0.016902425476018834
TISVPSTLTP	10	Unmodified	_TISVPSTLTP_					0	0	0		ENST00000357066.7_1_19:2071060-2071678:-|nuORF	ENST00000357066.7_1_19:2071060-2071678:-|nuORF	ENST00000357066.7_1_19:2071060-2071678:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3352355957031	2	508.28714	1014.55973	1.0961	0.00055712	1.4545	0.00073928	2.5505	0.0012964	508.2877194997344	139.2	0.43633	139.2	138.98	139.41	0					9	8	2	0	0	0	0.026582	1	16263	16263		51.335	18.523	1	23866			56862	10710	46908	46950	62240	62240					0.05302903520566815
TITAIAGLTSY	11	Unmodified	_TITAIAGLTSY_					0	0	0		ENST00000406156.2_1_6:121975405-121975696:+|nuORF	ENST00000406156.2_1_6:121975405-121975696:+|nuORF	ENST00000406156.2_1_6:121975405-121975696:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.7352905273438	2	555.805697	1109.59684	1.7456	0.00097022	3.6012	0.0020016	5.3468	0.0029718	555.8073976950087	102.09	0.51379	102.09	101.91	102.42	0					16	11	2	0	0	0	0.02567	1	11404	11404		52.937	17.736	1	183540			56863	11478	46909	46951	62241	62241					0.04642575066327481
TITAWWFSAP	10	Unmodified	_TITAWWFSAP_					0	0	0			REV__ENSG00000182674|ENST00000523207|KCNB2	REV__ENSG00000182674|ENST00000523207|KCNB2	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.841796875	2	590.295299	1178.57605	1.465	0.00086479	-1.1051	-0.00065236	0.35986	0.00021243	590.7972775051032	147.52	0.5835	147.52	147.16	147.74	0					16	11	2	0	0	0	0.026688	1	17264	17264		25.574	0	1	49606	+		56864	22311	46910	46952	62242	62242					-0.006099705226688457
TITINTRGGL	10	Unmodified	_TITINTRGGL_					0	0	0			REV__PKHD1|p.A3983Kfs*44|1|0.16|ENSG00000170927|chr6:51619327-51619360|CAGGTACACCTGCTGAGCAGGAGCACCTGGAGCA/-|frameshift_variant;REV__PKHD1|p.P2004Hfs*49|1|0.03|ENSG00000170927|chr6:51934220-51934221|-/T|frameshift_variant	REV__PKHD1|p.A3983Kfs*44|1|0.16|ENSG00000170927|chr6:51619327-51619360|CAGGTACACCTGCTGAGCAGGAGCACCTGGAGCA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3037109375	2	523.303655	1044.59276	-2.1228	-0.0011108	2.0352	0.001065	-0.087543	-4.5811E-05	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.79213	1	11521	11521		19.997	0	1	183010	+		56865	21578;29299	46911	46953	62243	62243					0.07224530363305348
TITLFFEP	8	Unmodified	_TITLFFEP_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.2530517578125	2	484.260394	966.506234	0.061753	2.9905E-05	1.0528	0.00050985	1.1146	0.00053975	484.2617654277319	32.031	0.39709	32.031	31.857	32.254	0					9	7	2	0	0	0	0.028476	1	1367	1367		33.516	0	1	7959.7	+		56866	18516	46912	46954	62244	62244					0.021641508087100192
TITTRSSAE	9	Unmodified	_TITTRSSAE_					0	0	0			REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4	REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.2748107910156	2	483.248546	964.482539	2.8713	0.0013876	-0.074843	-3.6168E-05	2.7965	0.0013514	483.24966022677876	99.159	0.20053	99.159	99.076	99.276	0					6	4	2	0	0	0	0.027462	1	10944	10944		21.96	0	1	78411	+		56867	20503	46913	46955	62245	62245					-0.0011231469576387099
TITWNIRKN	9	Unmodified	_TITWNIRKN_					0	0	0			REV__tr|A0A7D6VPK0|A0A7D6VPK0_9CLOTIg-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23315PE=3SV=1	REV__tr|A0A7D6VPK0|A0A7D6VPK0_9CLOTIg-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23315PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	572.7841186523438	2	573.324922	1144.63529	-0.55529	-0.00031836	-1.0571	-0.00060607	-1.6124	-0.00092444	573.3241366548903	103.22	1.3117	101.79	101.4	102.71	-1.4347					74	24	4	0	0	0	0.027279	1	7115	7115		51.335	0	1	516010	+		56868	31253	46914	46956	62246	62246					0.06875925491522139
TIVDRRLV	8	Unmodified	_TIVDRRLV_					0	0	0			REV__ENSG00000244623|ENST00000316368|OR2AE1	REV__ENSG00000244623|ENST00000316368|OR2AE1	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.304931640625	2	486.303458	970.592364	0.016353	7.9527E-06	3.7435	0.0018205	3.7599	0.0018284	486.3051966587704	121.94	2.2082	120.59	120.11	122.32	-1.3479					102	43	4	0	0	0	0.7224	1	11558	11558		38.806	3.6054	1	873390	+		56869	23479	46915	46957	62247	62247					0.10589155434092845
TIVIAYLMK	9	Unmodified	_TIVIAYLMK_					0	0	0		nc|ENSG00000143507|Q9Y6W6-2|DUSP10;ENST00000468085.5_1_1:221875756-221910233:-|nuORF;ENSG00000143507|ENST00000366899|DUSP10	nc|ENSG00000143507|Q9Y6W6-2|DUSP10	nc|ENSG00000143507|Q9Y6W6-2|DUSP10	MULTI-MSMS	OvCa99_classI_Rep5	1	526.3167724609375	2	526.314646	1050.61474	1.4872	0.00078273	0.92379	0.0004862	2.411	0.0012689	526.3150539679418	125.72	2.3814	125.72	125.11	127.49	0					116	54	3	0	0	0	0.44294	1	14535	14535		47.916	0.25827	1	273860			56870	5064	46916	46958	62248	62248					0.09145618787488274
TIVILLLSLES	11	Unmodified	_TIVILLLSLES_					0	0	0		ENSG00000172209|ENST00000304402|GPR22	ENSG00000172209|ENST00000304402|GPR22	ENSG00000172209|ENST00000304402|GPR22	MULTI-SECPEP	OvCa9_classI_Rep2	2	400.90289306640625	3	400.91984	1199.73769	2.0933	0.00083925	-1.2245	-0.00049094	0.86878	0.00034831	400.91922017104406	82.048	1.0418	80.399	80.023	81.065	-1.6485					54	19	4	0	0	0	0.025319	1	7051	7051		39.873	0	1	101990			56871	7275	46917	46959	62249	62249					0.14581153719745998
TIVLATIKSL	10	Unmodified	_TIVLATIKSL_					0	0	0			REV__tr|A0A7D6VRQ8|A0A7D6VRQ8_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03090PE=3SV=1	REV__tr|A0A7D6VRQ8|A0A7D6VRQ8_9CLOTMethyl-acceptingchemotaxisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03090PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.310302734375	2	529.844625	1057.6747	-1.2566	-0.00066581	-2.2394	-0.0011865	-3.496	-0.0018523	530.3452123535577	106.06	0.31034	104.04	103.85	104.16	-2.0161					10	5	2	0	0	0	0.026734	1	9650	9650		31.53	0	1	16530	+		56872	31436	46918	46960	62250	62250					0.14816632722386203
TIVRQPPIL	9	Unmodified	_TIVRQPPIL_					0	0	0			REV__IRS4|p.R145Q|1|0.47|ENSG00000133124|chrX:108735911-108735911|C/T|missense_variant	REV__IRS4|p.R145Q|1|0.47|ENSG00000133124|chrX:108735911-108735911|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.8281860351562	2	518.829309	1035.64407	0.0085595	4.4409E-06	-0.59769	-0.0003101	-0.58913	-0.00030566	518.8289766262699	122.91	2.4522	121.55	121.01	123.46	-1.3666					110	48	3	0	0	0	0.21395	1	11646	11646		73.975	5.1879	1	898440	+		56873	28314	46919	46961	62251	62251					0.12766899127996112
TIVVAHDLTP	10	Unmodified	_TIVVAHDLTP_					0	0	0		tr|A0A7D6VQH6|A0A7D6VQH6_9CLOTPhosphoenolpyruvate-proteinphosphotransferaseOS=ClostridiumintestinaleOX=36845GN=ptsPPE=3SV=1	tr|A0A7D6VQH6|A0A7D6VQH6_9CLOTPhosphoenolpyruvate-proteinphosphotransferaseOS=ClostridiumintestinaleOX=36845GN=ptsPPE=3SV=1	tr|A0A7D6VQH6|A0A7D6VQH6_9CLOTPhosphoenolpyruvate-proteinphosphotransferaseOS=ClostridiumintestinaleOX=36845GN=ptsPPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.25830078125	2	533.300581	1064.58661	-1.0808	-0.00057639	3.5666	0.0019021	2.4858	0.0013257	533.302260574943	106.61	0.79445	106.3	106.03	106.82	-0.30836					18	15	2	0	0	0	0.02661	1	9989	9989		68.787	17.451	1	17617			56874	34849	46920	46962	62252	62252					0.05690012131753974
TIVVAHDLTP	10	Unmodified	_TIVVAHDLTP_					0	0	0		tr|A0A7D6VQH6|A0A7D6VQH6_9CLOTPhosphoenolpyruvate-proteinphosphotransferaseOS=ClostridiumintestinaleOX=36845GN=ptsPPE=3SV=1	tr|A0A7D6VQH6|A0A7D6VQH6_9CLOTPhosphoenolpyruvate-proteinphosphotransferaseOS=ClostridiumintestinaleOX=36845GN=ptsPPE=3SV=1	tr|A0A7D6VQH6|A0A7D6VQH6_9CLOTPhosphoenolpyruvate-proteinphosphotransferaseOS=ClostridiumintestinaleOX=36845GN=ptsPPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	533.300581	1064.58661	0.82571	0.00044035	1.13	0.00060262	1.9557	0.001043	533.3005512775678	107.44	0.51927	106.17	106	106.52	-1.267	-0.063233	-0.0017312	NaN	68.787	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19665			56875	34849	46920	46962							0.05690012131753974
TIWELMTF	8	Unmodified	_TIWELMTF_					0	0	0		nc|ENSG00000178568|Q15303-4|ERBB4;nc|ENSG00000178568|Q15303-3|ERBB4;nc|ENSG00000178568|Q15303-2|ERBB4;ENSG00000178568|ENST00000342788|ERBB4	nc|ENSG00000178568|Q15303-4|ERBB4	nc|ENSG00000178568|Q15303-4|ERBB4	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.3172607421875	2	520.759704	1039.50485	-0.36256	-0.00018881	3.3357	0.0017371	2.9731	0.0015483	520.7611622073117	57.276	0.84293	54.484	54.08	54.922	-2.792					26	16	2	0	0	0	0.028476	1	4129	4129		28.254	5.2176	1	24846			56876	7762	46921	46963	62253	62253					-0.013318065517069044
TIWKTKKFHRP	11	Unmodified	_TIWKTKKFHRP_					0	0	0		ENSG00000170989|ENST00000305352|S1PR1	ENSG00000170989|ENST00000305352|S1PR1	ENSG00000170989|ENST00000305352|S1PR1	MULTI-MSMS	OvCa9_classI_Rep3	3	481.28314208984375	3	481.285739	1440.83539	-6.6786	-0.0032143	2.0959	0.0010087	-4.5828	-0.0022056	481.2868612614486	161.01	3.7232	159.65	158.49	162.21	-1.3523					206	77	3	0	0	0	0.72497	1	13931	13931		15.921	2.4127	1	127690			56877	7160	46922	46964	62254	62254					0.13260400159083474
TIWWRSRP	8	Unmodified	_TIWWRSRP_					0	0	0			REV__ENST00000425394.6_1_12:56713258-56713451:-|nuORF	REV__ENST00000425394.6_1_12:56713258-56713451:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	551.3043823242188	2	551.30125	1100.58795	0.23004	0.00012682	2.1784	0.0012009	2.4084	0.0013278	551.3020936327049	162.27	0.60445	162.27	161.92	162.53	0					36	11	5	0	0	0	0.6345	1	19020	19020		56.721	5.3856	1	248090	+		56878	25653	46923	46965	62255	62255					0.041676910111846155
TIYCKSDEE	9	Unmodified	_TIYCKSDEE_					0	0	0		tr|A0A553SJ83|A0A553SJ83_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_16305PE=4SV=1	tr|A0A553SJ83|A0A553SJ83_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_16305PE=4SV=1	tr|A0A553SJ83|A0A553SJ83_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_16305PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.275390625	2	544.234247	1086.45394	-0.69099	-0.00037606	1.9318	0.0010513	1.2408	0.00067529	544.2352509362851	36.007	3.8026	36.007	35.661	39.463	0					149	83	2	0	0	0	0.027446	1	2143	2143		42.864	26.391	1	453480			56879	33475	46924	46966	62256	62256					-0.08582800387216594
TIYFNCQKL	9	Unmodified	_TIYFNCQKL_					0	0	0		ENST00000557005.1_1_14:64490935-64514966:+|nuORF	ENST00000557005.1_1_14:64490935-64514966:+|nuORF	ENST00000557005.1_1_14:64490935-64514966:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.36376953125	2	565.289159	1128.56377	1.2402	0.00070105	-4.2665	-0.0024118	-3.0264	-0.0017108	565.286479695856	123.19	0.49554	121.83	121.6	122.1	-1.3666					17	9	2	0	0	0	0.027462	1	11652	11652		40.778	16.259	1	23430			56880	13679	46925	46967	62257	62257					0.004626697426374449
TIYIILFF	8	Unmodified	_TIYIILFF_					0	0	0			REV__ENSG00000170293|ENST00000307526|CMTM8	REV__ENSG00000170293|ENST00000307526|CMTM8	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2811279296875	2	515.304604	1028.59466	-0.28728	-0.00014804	2.8309	0.0014588	2.5436	0.0013107	515.305994362468	73.008	0.90475	73.008	72.574	73.479	0					42	22	4	0	0	0	0.028476	1	7081	7081		29.842	0	1	1991900	+		56881	21530	46926	46968	62258	62258					0.0815019111919355
TIYIILFF	8	Unmodified	_TIYIILFF_					0	0	0			REV__ENSG00000170293|ENST00000307526|CMTM8	REV__ENSG00000170293|ENST00000307526|CMTM8	MULTI-MATCH	OvCa9_classI_Rep3	3		2	515.304604	1028.59466	0.018038	9.2949E-06	-4.1504	-0.0021387	-4.1323	-0.0021294	515.8043784167429	75.192	0.3824	72.781	72.439	72.822	-2.4106	-0.11325	-0.0068517	NaN	29.842	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15591	+		56882	21530	46926	46968							0.0815019111919355
TIYIMNRS	8	Unmodified	_TIYIMNRS_					0	0	0			REV__nc|ENSG00000188372|P21754-3|ZP3	REV__nc|ENSG00000188372|P21754-3|ZP3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.2815246582031	2	499.260402	996.506251	3.5279	0.0017613	-4.1027	-0.0020483	-0.57483	-0.00028699	499.25783233990654	132.76	0.63953	131.26	130.8	131.44	-1.5015					17	12	2	0	0	0	0.028476	1	12805	12805		25.45	0	1	18516	+		56883	22711	46927	46969	62259	62259					0.007858275370722367
TIYRFPIRK	9	Unmodified	_TIYRFPIRK_					0	0	0		tr|A0A553SS40|A0A553SS40_NIACISporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_02365PE=3SV=1	tr|A0A553SS40|A0A553SS40_NIACISporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_02365PE=3SV=1	tr|A0A553SS40|A0A553SS40_NIACISporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_02365PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	597.3563232421875	2	597.361308	1192.70806	-5.0217	-0.0029997	0.45711	0.00027306	-4.5646	-0.0027267	597.3613502692024	157	0.93945	156.78	156.54	157.48	-0.22696					63	26	4	0	0	0	0.7044	1	16028	16028		16.473	3.514	1	80526			56884	34329	46928	46970	62260	62260					0.11941679284927886
TKAAGGGPVLL	11	Unmodified	_TKAAGGGPVLL_					0	0	0			REV__ENST00000466935.1_1_22:21996661-21997389:+|nuORF	REV__ENST00000466935.1_1_22:21996661-21997389:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	492.2967224121094	2	492.297842	982.581131	0.022489	1.1071E-05	-0.27054	-0.00013319	-0.24805	-0.00012211	492.2975482540187	99.008	1.4907	98.115	97.361	98.852	-0.89305					55	29	2	0	0	0	0.63561	1	9031	9031		41.427	2.1738	1	258480	+		56885	18845	46929	46971	62261	62261					0.08914333339953373
TKAAGGGPVLL	11	Unmodified	_TKAAGGGPVLL_					0	0	0			REV__ENST00000466935.1_1_22:21996661-21997389:+|nuORF	REV__ENST00000466935.1_1_22:21996661-21997389:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	492.297842	982.581131	0.022489	1.1071E-05	-0.27054	-0.00013319	-0.24805	-0.00012211	492.2975482540187	99.008	1.4907	98.115	97.361	98.852	-0.89305	-0.023009	-0.00041873	NaN	41.427	55	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	258480	+		56886	18845	46929	46971							0.08914333339953373
TKAAGGGPVLL	11	Unmodified	_TKAAGGGPVLL_					0	0	0			REV__ENST00000466935.1_1_22:21996661-21997389:+|nuORF	REV__ENST00000466935.1_1_22:21996661-21997389:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	492.297842	982.581131	-0.83922	-0.00041315	0.73545	0.00036206	-0.10377	-5.1085E-05	492.29806812644125	100.43	1.0668	98.161	97.726	98.792	-2.2665	0.023009	0.00057177	NaN	41.427	38	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345110	+		56887	18845	46929	46971							0.08914333339953373
TKAAKGKK	8	Unmodified	_TKAAKGKK_					0	0	0			REV__ZFYVE26-NEMF|1|fusion;REV__nc|ENSG00000165525|O60524-5|NEMF	REV__ZFYVE26-NEMF|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.5633544921875	2	416.27417	830.533787	0.43471	0.00018096	2.4377	0.0010148	2.8724	0.0011957	416.27514243269553	33.359	0.24804	33.359	33.136	33.384	0					5	4	2	0	0	0	0.028476	1	1529	1529		10.265	3.5297	1	11472	+		56888	32770;21097	46930	46972	62262	62262					0.11174098859612513
TKAALTIIRY	10	Unmodified	_TKAALTIIRY_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D;ENST00000585094.1_1_17:30986131-31048108:-|nuORF	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	OvCa9_classI_Rep2	2	575.348388671875	2	575.353148	1148.69174	-5.3555	-0.0030813	1.6434	0.00094551	-3.7121	-0.0021358	575.3541227015148	157.34	0.65527	157.11	156.88	157.53	-0.22696					24	20	2	0	0	0	0.79213	1	16012	16012		19.997	6.5427	1	25583			56889	7620	46931	46973	62263	62263					0.1233455332817357
TKAEAPLLT	9	Unmodified	_TKAEAPLLT_					0	0	0		nc|ENSG00000163156|Q9BWG6-3|SCNM1;ENST00000461862.5_1_1:151138565-151139978:+|nuORF;nc|ENSG00000163156|Q9BWG6-2|SCNM1;ENSG00000163156|ENST00000368905|SCNM1;ENST00000497147.1_1_1:151139275-151141558:+|nuORF	nc|ENSG00000163156|Q9BWG6-3|SCNM1	nc|ENSG00000163156|Q9BWG6-3|SCNM1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.29351806640625	2	472.276575	942.538597	0.082712	3.9063E-05	2.6295	0.0012418	2.7122	0.0012809	472.27630751258255	82.173	1.0655	79.49	79.156	80.222	-2.6829					61	21	4	0	0	0	0.027433	1	6823	6823		45.972	8.8131	1	253210			56890	6273	46932	46974	62264	62264					0.06502938211713172
TKAIVVKLV	9	Unmodified	_TKAIVVKLV_					0	0	0		tr|A0A553SIN6|A0A553SIN6_NIACISugarisomeraseOS=NialliacirculansOX=1397GN=CEQ21_15185PE=4SV=1	tr|A0A553SIN6|A0A553SIN6_NIACISugarisomeraseOS=NialliacirculansOX=1397GN=CEQ21_15185PE=4SV=1	tr|A0A553SIN6|A0A553SIN6_NIACISugarisomeraseOS=NialliacirculansOX=1397GN=CEQ21_15185PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.2927551269531	2	485.836603	969.658653	-0.18485	-8.9805E-05	-1.3845	-0.00067265	-1.5694	-0.00076245	485.83615954826905	83.256	0.48891	80.593	80.388	80.877	-2.6629					12	9	2	0	0	0	0.027462	1	6892	6892		19.104	2.6304	1	20802			56891	33403	46933	46975	62265	62265					0.1726097127614139
TKAKRTSPQP	10	Unmodified	_TKAKRTSPQP_					0	0	0			REV__ENSG00000165458|ENST00000298229|INPPL1	REV__ENSG00000165458|ENST00000298229|INPPL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.799560546875	2	557.32238	1112.63021	-0.1862	-0.00010377	-0.53303	-0.00029707	-0.71923	-0.00040084	557.3220514480025	59.872	0.70317	59.872	59.611	60.314	0					30	17	2	0	0	0	0.026915	1	5182	5182		35.618	0.46626	1	1251700	+		56892	21089	46934	46976	62266	62266					0.07839621628886562
TKAPKVEKGPL	11	Unmodified	_TKAPKVEKGPL_					0	0	0		NDST4|p.L235*|1|0.48|ENSG00000138653|chr4:115076333-115076333|A/-|frameshift_variant;ENSG00000138653|ENST00000264363|NDST4	NDST4|p.L235*|1|0.48|ENSG00000138653|chr4:115076333-115076333|A/-|frameshift_variant	NDST4|p.L235*|1|0.48|ENSG00000138653|chr4:115076333-115076333|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3565673828125	2	584.358431	1166.70231	-2.312	-0.0013511	-1.149	-0.00067141	-3.461	-0.0020225	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.70761	1	14751	14751		27.047	0.3544	1	180810			56893	4706	46935	46977	62267	62267					0.12562535982624468
TKAREISPL	9	Unmodified	_TKAREISPL_					0	0	0		tr|A0A7D7A092|A0A7D7A092_9CLOTLCPfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09060PE=3SV=1	tr|A0A7D7A092|A0A7D7A092_9CLOTLCPfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09060PE=3SV=1	tr|A0A7D7A092|A0A7D7A092_9CLOTLCPfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09060PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.3061828613281	2	507.800749	1013.58694	2.809	0.0014264	-0.78818	-0.00040024	2.0208	0.0010262	507.8003686214797	89.499	1.853	89.499	89.004	90.857	0					133	45	4	0	0	0	0.35444	1	9601	9601		56.721	0.28726	1	8833800			56894	35990	46936	46978	62268	62268					0.0806943185162936
TKATPTWI	8	Unmodified	_TKATPTWI_					0	0	0			REV__ENSG00000226372|ENST00000441525|DCAF8L1	REV__ENSG00000226372|ENST00000441525|DCAF8L1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.7460021972656	2	459.258185	916.501818	-1.2467	-0.00057258	-3.9078	-0.0017947	-5.1545	-0.0023673	459.25633115182677	43.02	0.78709	40.013	39.906	40.693	-3.0074					20	14	3	0	0	0	0.028476	1	2038	2038		42.396	14.142	1	31129	+		56895	23371	46937	46979	62269	62269					0.0402268638579244
TKATVVRLP	9	Unmodified	_TKATVVRLP_					0	0	0		ENSG00000118492|ENST00000397944|ADGB	ENSG00000118492|ENST00000397944|ADGB	ENSG00000118492|ENST00000397944|ADGB	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.29974365234375	2	492.813659	983.612765	2.3977	0.0011816	-0.22553	-0.00011114	2.1722	0.0010705	492.81342359471745	97.21	0.51274	97.21	96.966	97.479	0					23	11	3	0	0	0	0.027462	1	10705	10705		30.318	6.115	1	503720			56896	3309	46938	46980	62270	62270					0.12030326093884014
TKCRRLTSI	9	Unmodified	_TKCRRLTSI_					0	0	0		ENST00000290573.6_1_2:75061753-75081540:+|nuORF	ENST00000290573.6_1_2:75061753-75081540:+|nuORF	ENST00000290573.6_1_2:75061753-75081540:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.7598876953125	2	539.3135	1076.61245	-0.41608	-0.0002244	4.2152	0.0022733	3.7992	0.0020489	539.3145829089491	54.445	0.21292	54.445	54.334	54.547	0					6	4	2	0	0	0	0.027462	1	4390	4390		17.468	0	1	92281			56897	10090	46939	46981	62271	62271					0.07720583102377532
TKDFATVE	8	Unmodified	_TKDFATVE_					0	0	0		WDR44|p.A205T|1|0.27|ENSG00000131725|chrX:118393058-118393058|G/A|missense_variant	WDR44|p.A205T|1|0.27|ENSG00000131725|chrX:118393058-118393058|G/A|missense_variant	WDR44|p.A205T|1|0.27|ENSG00000131725|chrX:118393058-118393058|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.246337890625	2	455.729458	909.444362	-0.43604	-0.00019872	0.54061	0.00024637	0.10458	4.7658E-05	455.7295719065667	50.531	1.0864	50.531	50.288	51.374	0					35	24	2	0	0	0	0.028476	1	3810	3810		15.642	0	1	352340			56898	36306	46940	46982	62272	62272					-0.013982006104129141
TKDKLKPPQ	9	Unmodified	_TKDKLKPPQ_					0	0	0			REV__ENSG00000012983|ENST00000682126|MAP4K5	REV__ENSG00000012983|ENST00000682126|MAP4K5	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.3143310546875	2	527.816399	1053.61824	-0.49415	-0.00026082	0.18019	9.5109E-05	-0.31396	-0.00016571	527.8164433541303	73.14	1.6345	70.653	70.332	71.967	-2.4873					54	32	2	0	0	0	0.027462	1	3683	3683		42.396	10.866	1	423960	+		56899	16502	46941	46983	62273	62273					0.09358004885712035
TKDKLKPPQ	9	Unmodified	_TKDKLKPPQ_					0	0	0			REV__ENSG00000012983|ENST00000682126|MAP4K5	REV__ENSG00000012983|ENST00000682126|MAP4K5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	527.816399	1053.61824	-0.45189	-0.00023852	0.26408	0.00013938	-0.18782	-9.9133E-05	527.8164720465223	73.045	1.4654	70.646	70.272	71.738	-2.3999	-0.0036485	5.4403E-05	NaN	26.693	46	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214360	+		56900	16502	46941	46983							0.09358004885712035
TKDMKKALETD	11	Unmodified	_TKDMKKALETD_					0	0	0			REV__tr|A0A7D6ZUV4|A0A7D6ZUV4_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20075PE=4SV=1	REV__tr|A0A7D6ZUV4|A0A7D6ZUV4_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20075PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	639.3646240234375	2	640.331753	1278.64895	1.0039	0.00064284	-4.3003	-0.0027536	-3.2964	-0.0021108	640.8302670296279	159.19	0.29533	159.19	158.94	159.24	0					6	5	2	0	0	0	0.025759	1	18645	18645		21.686	0	1	19029	+		56901	32229	46942	46984	62274	62274					0.020773704177827312
TKDQIVLEF	9	Unmodified	_TKDQIVLEF_					0	0	0			REV__tr|A0A553SUP2|A0A553SUP2_NIACIUvrABCsystemproteinAOS=NialliacirculansOX=1397GN=CEQ21_04190PE=3SV=1	REV__tr|A0A553SUP2|A0A553SUP2_NIACIUvrABCsystemproteinAOS=NialliacirculansOX=1397GN=CEQ21_04190PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.7841796875	2	546.800414	1091.58628	0.014153	7.7386E-06	-0.42275	-0.00023116	-0.4086	-0.00022342	546.7989348720864	67.439	0.15187	67.439	67.337	67.489	0					5	3	2	0	0	0	0.027462	1	6294	6294		20.947	0	1	95847	+		56902	31103	46943	46985	62275	62275					0.04414592411899321
TKDTSGDDVL	10	Unmodified	_TKDTSGDDVL_					0	0	0			REV__tr|A0A553SFF3|A0A553SFF3_NIACIGlycosyltransferasefamily2proteinOS=NialliacirculansOX=1397GN=CEQ21_08770PE=3SV=1	REV__tr|A0A553SFF3|A0A553SFF3_NIACIGlycosyltransferasefamily2proteinOS=NialliacirculansOX=1397GN=CEQ21_08770PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.7962646484375	2	525.751118	1049.48768	-1.5977	-0.00083998	-3.6488	-0.0019183	-5.2465	-0.0027583	525.7488184532218	85.116	0.98759	82.895	82.548	83.536	-2.2204					28	19	2	0	0	0	0.026826	1	5050	5050		44.377	6.5657	1	36354	+		56903	29572	46944	46986	62276	62276					-0.035080556237971905
TKEALKEF	8	Unmodified	_TKEALKEF_					0	0	0		ENSG00000115808|ENST00000263918|STRN;nc|ENSG00000115808|O43815-2|STRN;ENST00000495595.1_1_2:37111179-37129881:-|nuORF	ENSG00000115808|ENST00000263918|STRN	ENSG00000115808|ENST00000263918|STRN	MULTI-MSMS	OvCa9_classI_Rep4_	4	483.27215576171875	2	483.26875	964.522947	3.0408	0.0014695	-3.0952	-0.0014958	-0.05446	-2.6319E-05	483.267098190816	134.47	0.59486	132.94	132.69	133.28	-1.5257					18	11	2	0	0	0	0.72896	1	13017	13017		37.159	6.6555	1	19305			56904	3128	46945	46987	62277	62277					0.03926651694666816
TKEDLGFDYK	10	Unmodified	_TKEDLGFDYK_					0	0	0		tr|A0A7D6VR32|A0A7D6VR32_9CLOTS-adenosylmethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metKPE=3SV=1	tr|A0A7D6VR32|A0A7D6VR32_9CLOTS-adenosylmethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metKPE=3SV=1	tr|A0A7D6VR32|A0A7D6VR32_9CLOTS-adenosylmethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metKPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	608.2977294921875	2	608.298236	1214.58192	-0.93086	-0.00056624	-1.4802	-0.00090043	-2.4111	-0.0014667	608.2971907887074	58.323	2.9269	55.538	54.93	57.857	-2.7848					145	56	4	0	0	0	0.54579	1	4217	4217		22.58	0	1	664310			56905	34890	46946	46988	62278	62278					-0.01678916801665764
TKEEQNEET	9	Unmodified	_TKEEQNEET_					0	0	0			REV__tr|A0A553SU18|A0A553SU18_NIACINodBhomologydomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06070PE=4SV=1	REV__tr|A0A553SU18|A0A553SU18_NIACINodBhomologydomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06070PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.2809448242188	2	554.243657	1106.47276	0.18411	0.00010204	-1.3706	-0.00075966	-1.1865	-0.00065762	554.2418636620785	62.108	0.82439	58.65	58.336	59.16	-3.4577					32	16	3	0	0	0	0.027438	1	4317	4317		47.96	0	1	83507	+		56906	31031	46947	46989	62279	62279					-0.07621547491794445
TKEIEELTL	9	Unmodified	_TKEIEELTL_					0	0	0			REV__tr|A0A7D6ZYY9|A0A7D6ZYY9_9CLOTTerBfamilytelluriteresistanceproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04285PE=4SV=1	REV__tr|A0A7D6ZYY9|A0A7D6ZYY9_9CLOTTerBfamilytelluriteresistanceproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04285PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	538.2996215820312	2	538.297704	1074.58086	2.0974	0.001129	1.0407	0.00056021	3.1381	0.0016892	538.2983264125955	95.641	0.79732	95.641	95.328	96.126	0					50	18	4	0	0	0	0.24951	1	10448	10448		68.787	2.3575	1	3635300	+		56907	32392	46948	46990	62280	62280					0.046548688294251406
TKEIEELTL	9	Unmodified	_TKEIEELTL_					0	0	0			REV__tr|A0A7D6ZYY9|A0A7D6ZYY9_9CLOTTerBfamilytelluriteresistanceproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04285PE=4SV=1	REV__tr|A0A7D6ZYY9|A0A7D6ZYY9_9CLOTTerBfamilytelluriteresistanceproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04285PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	538.297704	1074.58086	-0.53259	-0.00028669	-4.359	-0.0023464	-4.8916	-0.0026331	538.2952047886722	96.551	0.44659	95.593	95.232	95.678	-0.95857	-0.024242	-0.0054677	NaN	68.787	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8165	+		56908	32392	46948	46990							0.046548688294251406
TKEIQRDLV	9	Unmodified	_TKEIQRDLV_					0	0	0			REV__tr|A0A7D6ZFX9|A0A7D6ZFX9_9CLOTFlagellarbiosynthesisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16845PE=4SV=1	REV__tr|A0A7D6ZFX9|A0A7D6ZFX9_9CLOTFlagellarbiosynthesisproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16845PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	551.3195190429688	2	551.316763	1100.61897	-1.017	-0.00056071	0.3541	0.00019522	-0.66294	-0.00036549	551.3169361591595	49.921	1.4003	49.921	49.593	50.993	0					83	31	4	0	0	0	0.22035	1	3743	3743		72.879	6.45	1	10286000	+		56909	31987	46949	46991	62281	62281					0.07268799534745085
TKEITGRVQ	9	Unmodified	_TKEITGRVQ_					0	0	0			REV__tr|A0A7D7A6B4|A0A7D7A6B4_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09710PE=4SV=1	REV__tr|A0A7D7A6B4|A0A7D7A6B4_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09710PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	516.2957153320312	2	516.29583	1030.57711	0.9175	0.0004737	-1.1848	-0.0006117	-0.26729	-0.000138	516.295098499438	30.292	1.2323	27.582	27.36	28.592	-2.7097					62	24	4	0	0	0	0.3249	1	798	798		60.118	3.3972	1	509350	+		56910	32656	46950	46992	62282	62282					0.06304243846238933
TKEITGTDKVN	11	Unmodified	_TKEITGTDKVN_					0	0	0		tr|A0A553SU13|A0A553SU13_NIACIAlkylhydroperoxidereductasesubunitFOS=NialliacirculansOX=1397GN=ahpFPE=3SV=1	tr|A0A553SU13|A0A553SU13_NIACIAlkylhydroperoxidereductasesubunitFOS=NialliacirculansOX=1397GN=ahpFPE=3SV=1	tr|A0A553SU13|A0A553SU13_NIACIAlkylhydroperoxidereductasesubunitFOS=NialliacirculansOX=1397GN=ahpFPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	402.259521484375	3	402.550587	1204.62993	2.2401	0.00090175	-0.62783	-0.00025273	1.6123	0.00064901	402.55037429469724	64.528	0.77853	61.042	60.773	61.552	-3.4854					21	15	2	0	0	0	0.025457	1	4580	4580		10.998	0	1	27509			56911	34561	46951	46993	62283	62283					0.03580157118403804
TKEKLPCIL	9	Unmodified	_TKEKLPCIL_					0	0	0		ENSG00000198722|ENST00000635942|UNC13B;nc|ENSG00000198722|O14795|UNC13B;nc|ENSG00000198722|O14795-2|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	ENSG00000198722|ENST00000635942|UNC13B	MULTI-MSMS	OvCa99_classI_Rep5	1	522.8123779296875	2	522.809728	1043.6049	0.79646	0.0004164	-1.8761	-0.00098086	-1.0797	-0.00056446	522.8085992447949	144.69	0.68085	144.69	144.45	145.13	0					27	13	3	0	0	0	0.50149	1	16899	16899		42.396	1.618	1	301180			56912	8857	46952	46994	62284	62284					0.08484430782095842
TKELLLDL	8	Unmodified	_TKELLLDL_					0	0	0			REV__ENSG00000108465|ENST00000338399|CDK5RAP3	REV__ENSG00000108465|ENST00000338399|CDK5RAP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.270263671875	2	472.786776	943.558998	0.31674	0.00014975	3.7956	0.0017945	4.1123	0.0019443	472.78846242733715	45.267	0.44096	45.267	44.932	45.373	0					13	9	2	0	0	0	0.028476	1	3116	3116		24.203	0	1	101850	+		56913	17889	46953	46995	62285	62285					0.08496108871520391
TKELQVNIS	9	Unmodified	_TKELQVNIS_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7750244140625	2	516.290214	1030.56587	0.61104	0.00031547	-1.4076	-0.00072675	-0.7966	-0.00041127	516.7898943647768	110.45	0.4735	108.85	108.65	109.12	-1.6011					10	8	2	0	0	0	0.027418	1	10175	10175		56.434	16.376	1	7042.3			56914	7566	46954	46996	62286	62286					0.051814217520814054
TKEMFCEVD	9	Unmodified	_TKEMFCEVD_					0	0	0		ENSG00000220948|ENST00000534741|TRIM51G	ENSG00000220948|ENST00000534741|TRIM51G	ENSG00000220948|ENST00000534741|TRIM51G	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.2977294921875	2	551.233193	1100.45183	0.96048	0.00052945	1.4662	0.00080821	2.4267	0.0013377	551.2337546227753	109.59	0.57876	109.59	109.37	109.95	0					25	12	3	0	0	0	0.027462	1	12449	12449		17.468	0	1	238540			56915	9225	46955	46997	62287	62287					-0.09437552396661886
TKEQILEILM	10	Unmodified	_TKEQILEILM_					0	0	0		nc|ENSG00000154957|P17022-2|ZNF18;ENSG00000154957|ENST00000580306|ZNF18	nc|ENSG00000154957|P17022-2|ZNF18	nc|ENSG00000154957|P17022-2|ZNF18	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.9313659667969	3	406.56518	1216.67371	0.81694	0.00033214	1.8974	0.00077142	2.7143	0.0011036	406.5660791058634	43.249	0.4643	43.249	43.143	43.608	0					14	10	2	0	0	0	0.026666	1	2882	2882		43.651	12.017	1	61643			56916	5761	46956	46998	62288	62288					0.07404050291142994
TKERRLGA	8	Unmodified	_TKERRLGA_					0	0	0			REV__ENST00000566709.5_1_16:1859286-1859755:-|nuORF	REV__ENST00000566709.5_1_16:1859286-1859755:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	465.2860107421875	2	465.777608	929.540663	1.3536	0.00063048	-2.1122	-0.00098382	-0.75859	-0.00035334	465.7761645766656	126.2	0.2101	125.13	125.02	125.23	-1.0715					5	3	2	0	0	0	0.028476	1	9857	9857		53.351	0	1	10121	+		56917	27705	46957	46999	62289	62289					0.07307411740168845
TKERRSRSR	9	Unmodified	_TKERRSRSR_					0	0	0			REV__ENSG00000167978|ENST00000301740|SRRM2	REV__ENSG00000167978|ENST00000301740|SRRM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.309326171875	2	588.339427	1174.6643	0.69966	0.00041164	1.9617	0.0011541	2.6613	0.0015658	588.3401321314623	81.434	0.16379	81.434	81.329	81.493	0					6	3	2	0	0	0	0.027462	1	8392	8392		27.882	13.745	1	269070	+		56918	21327	46958	47000	62290	62290					0.08395462840508117
TKETLLYE	8	Unmodified	_TKETLLYE_					0	0	0			REV__nc|ENSG00000165181|Q5VXU9-3|SHOC1	REV__nc|ENSG00000165181|Q5VXU9-3|SHOC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.7878723144531	2	498.76604	995.517527	0.44163	0.00022027	-4.4138	-0.0022014	-3.9722	-0.0019812	498.7635581865393	37.809	0.49902	34.916	34.691	35.19	-2.8925					11	9	2	0	0	0	0.028476	1	1444	1444		23.042	0	1	15445	+		56919	21065	46959	47001	62291	62291					0.01958928112196645
TKETPPTAH	9	Unmodified	_TKETPPTAH_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-SECPEP	OvCa9_classI_Rep2	2	491.7818298339844	2	491.253631	980.49271	1.1042	0.00054244	-1.8577	-0.00091259	-0.75349	-0.00037015	491.2524744872663	71.391	1.0484	68.884	68.541	69.59	-2.5071					29	19	2	0	0	0	0.027461	1	5707	5707		40.778	15.328	1	34012			56920	4072	46960	47002	62292	62292					0.001682930294578
TKFDILTRL	9	Unmodified	_TKFDILTRL_					0	0	0		tr|A0A553SGU7|A0A553SGU7_NIACIDEAD-boxATP-dependentRNAhelicaseCshAOS=NialliacirculansOX=1397GN=cshAPE=3SV=1	tr|A0A553SGU7|A0A553SGU7_NIACIDEAD-boxATP-dependentRNAhelicaseCshAOS=NialliacirculansOX=1397GN=cshAPE=3SV=1	tr|A0A553SGU7|A0A553SGU7_NIACIDEAD-boxATP-dependentRNAhelicaseCshAOS=NialliacirculansOX=1397GN=cshAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8298950195312	2	553.832049	1105.64954	-2.2198	-0.0012294	-1.4062	-0.0007788	-3.626	-0.0020082	553.8311075714116	139.08	3.9663	138.02	135.98	139.95	-1.0595					202	80	4	0	0	0	0.53483	1	11377	11377		39.253	10.103	1	74733			56921	33198	46961	47003	62293	62293					0.10094577919790026
TKFGFLRLS	9	Unmodified	_TKFGFLRLS_					0	0	0		ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENSG00000134910|ENST00000392708|STT3A	ENST00000534472.5_1_11:125465789-125479519:+|nuORF	ENST00000534472.5_1_11:125465789-125479519:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.7254638671875	2	534.813659	1067.61277	-1.7805	-0.00095222	1.4196	0.00075922	-0.36089	-0.00019301	534.8142279972056	65.794	0.82476	62.308	62.082	62.907	-3.4854					30	16	3	0	0	0	0.027462	1	4795	4795		27.882	11.409	1	113430			56922	4347	46962	47004	62294	62294					0.08166326093896714
TKFGFLRLS	9	Unmodified	_TKFGFLRLS_					0	0	0		ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENSG00000134910|ENST00000392708|STT3A	ENST00000534472.5_1_11:125465789-125479519:+|nuORF	ENST00000534472.5_1_11:125465789-125479519:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	534.813659	1067.61277	-0.52146	-0.00027889	0.30421	0.0001627	-0.21726	-0.00011619	534.813766739737	64.932	0.98158	62.207	61.811	62.792	-2.7245	-0.050563	-0.00035984	NaN	27.882	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	79657			56923	4347	46962	47004							0.08166326093896714
TKFVILSIY	9	Unmodified	_TKFVILSIY_					0	0	0			REV__ENST00000263857.10_1_2:86333061-86333139:-|nuORF	REV__ENST00000263857.10_1_2:86333061-86333139:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.2693481445312	2	542.326068	1082.63758	-1.9158	-0.001039	-2.3656	-0.0012829	-4.2814	-0.0023219	542.325060509648	72.907	0.77411	69.511	69.156	69.93	-3.3961					26	15	3	0	0	0	0.027462	1	5633	5633		21.96	0	1	66762	+		56924	24008	46963	47005	62295	62295					0.09956961176635559
TKGFASVSEK	10	Unmodified	_TKGFASVSEK_					0	0	0		nc|ENSG00000243667|Q96MX6-2|DNAAF10;ENST00000492039.6_1_2:68352461-68384592:-|nuORF;ENSG00000243667|ENST00000295121|DNAAF10	nc|ENSG00000243667|Q96MX6-2|DNAAF10	nc|ENSG00000243667|Q96MX6-2|DNAAF10	MULTI-MSMS	OvCa9_classI_Rep2	2	527.2808227539062	2	527.282389	1052.55022	-1.0628	-0.00056039	0.78414	0.00041347	-0.27864	-0.00014692	527.2826541808121	56.719	1.6865	53.915	53.374	55.06	-2.804					115	33	5	0	0	0	0.52162	1	3997	3997		51.528	4.7613	1	682000			56925	9379	46964	47006	62296	62296					0.026051352350577872
TKGFISSIF	9	Unmodified	_TKGFISSIF_					0	0	0			REV__tr|A0A7D6VPV6|A0A7D6VPV6_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13125PE=4SV=1	REV__tr|A0A7D6VPV6|A0A7D6VPV6_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13125PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	499.7657470703125	2	500.279118	998.543683	0.26214	0.00013114	3.8129	0.0019075	4.075	0.0020386	500.2809951167991	66.427	0.99283	63.731	63.071	64.064	-2.6958					24	19	2	0	0	0	0.027462	1	5122	5122		35.618	2.8059	1	12270	+		56926	31281	46965	47007	62297	62297					0.04435242074350754
TKGGLESYPVK	11	Unmodified	_TKGGLESYPVK_					0	0	0			REV__ENSG00000067715|ENST00000261205|SYT1	REV__ENSG00000067715|ENST00000261205|SYT1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	589.3512573242188	2	589.824421	1177.63429	0.075145	4.4323E-05	-1.2308	-0.00072595	-1.1557	-0.00068163	589.8238047667934	89.351	0.44051	86.748	86.532	86.972	-2.6027					9	8	2	0	0	0	0.025673	1	7642	7642		56.434	5.2411	1	15833	+		56927	16839	46966	47008	62298	62298					0.05257666331931432
TKGGSQKKLK	10	Unmodified	_TKGGSQKKLK_					0	0	0			REV__ENST00000487968.5_1_22:23626151-23631864:+|nuORF	REV__ENST00000487968.5_1_22:23626151-23631864:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3021240234375	2	537.835123	1073.65569	-0.15543	-8.3593E-05	2.3331	0.0012548	2.1777	0.0011712	537.8360959520492	43.046	0.55376	43.046	42.839	43.393	0					23	12	3	0	0	0	0.026867	1	2792	2792		42.864	10.909	1	96003	+		56928	22609	46967	47009	62299	62299					0.12181096151311976
TKGKSYQCN	9	Unmodified	_TKGKSYQCN_					0	0	0		nc|ENSG00000214534|A8MWA4|ZNF705EP;ENSG00000215372|ENST00000400156|ZNF705G;ENSG00000215356|ENST00000400120|ZNF705B;ENSG00000215343|ENST00000400085|ZNF705D;ENSG00000196946|ENST00000396570|ZNF705A	nc|ENSG00000214534|A8MWA4|ZNF705EP	nc|ENSG00000214534|A8MWA4|ZNF705EP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.3119506835938	2	514.745116	1027.47568	-0.78558	-0.00040437	3.3425	0.0017206	2.557	0.0013162	514.7461092602764	52.882	0.39242	49.674	49.451	49.844	-3.208					10	7	2	0	0	0	0.027462	1	3200	3200		29.15	0	1	34216			56929	15311	46968	47010	62300	62300					-0.036959508479640135
TKGKTSVTKLD	11	Unmodified	_TKGKTSVTKLD_					0	0	0			REV__nc|ENSG00000065618|Q9UMD9-2|COL17A1	REV__nc|ENSG00000065618|Q9UMD9-2|COL17A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3428955078125	2	589.342978	1176.6714	-2.1868	-0.0012888	2.1045	0.0012403	-0.082325	-4.8518E-05	589.3441619466173	148.26	4.549	146.82	145.53	150.08	-1.435					304	95	6	0	0	0	0.7046	1	14695	14695		28.081	5.5018	1	385010	+		56930	16801	46969	47011	62301	62301					0.09013337877695449
TKGNLVRI	8	Unmodified	_TKGNLVRI_					0	0	0		nc|ENSG00000088053|Q9HCN6-2|GP6;nc|ENSG00000088053|Q9HCN6|GP6	nc|ENSG00000088053|Q9HCN6-2|GP6	nc|ENSG00000088053|Q9HCN6-2|GP6	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.7684020996094	2	450.784902	899.55525	0.34375	0.00015496	-1.3937	-0.00062827	-1.05	-0.00047331	450.78418844842247	65.219	0.27533	65.219	64.995	65.271	0					8	6	2	0	0	0	0.028476	1	5969	5969		20.947	0	1	106020			56931	14910	46970	47012	62302	62302					0.10145483888334184
TKGQLDAIR	9	Unmodified	_TKGQLDAIR_					0	0	0			REV__ENSG00000113594|ENST00000453190|LIFR	REV__ENSG00000113594|ENST00000453190|LIFR	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.29034423828125	2	501.290548	1000.56654	1.3674	0.00068548	-1.5595	-0.00078175	-0.19204	-9.6267E-05	501.2895121117765	137.98	2.3901	136.45	135.78	138.17	-1.5284					99	50	3	0	0	0	0.69123	1	13422	13422		20.947	0.95016	1	64432	+		56932	18161	46971	47013	62303	62303					0.06628261191781348
TKGRGVKG	8	Unmodified	_TKGRGVKG_					0	0	0		ENSG00000140986|ENST00000268661|RPL3L	ENSG00000140986|ENST00000268661|RPL3L	ENSG00000140986|ENST00000268661|RPL3L	MULTI-SECPEP	OvCa9_classI_Rep2	2	402.25830078125	2	401.748319	801.482085	0.079835	3.2074E-05	0.64732	0.00026006	0.72716	0.00029213	401.7495972726197	63.459	0.3633	60.714	60.427	60.79	-2.7444					8	6	2	0	0	0	0.028476	1	4781	4781		31.955	14.59	1	3995.3			56933	4886	46972	47014	62304	62304					0.07340355165717938
TKGTVIKV	8	Unmodified	_TKGTVIKV_					0	0	0		MYO6|p.R980Tfs*5|1|0.29|ENSG00000196586|chr6:75891292-75891293|-/A|frameshift_variant;nc|ENSG00000196586|Q9UM54-5|MYO6;nc|ENSG00000196586|Q9UM54-2|MYO6;nc|ENSG00000196586|Q9UM54-6|MYO6;nc|ENSG00000196586|Q9UM54-4|MYO6;ENSG00000196586|ENST00000369977|MYO6;nc|ENSG00000196586|Q9UM54|MYO6	MYO6|p.R980Tfs*5|1|0.29|ENSG00000196586|chr6:75891292-75891293|-/A|frameshift_variant	MYO6|p.R980Tfs*5|1|0.29|ENSG00000196586|chr6:75891292-75891293|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	423.275146484375	2	423.276378	844.538203	-1.0746	-0.00045487	-1.9263	-0.00081535	-3.0009	-0.0012702	423.27545611036373	140.26	1.6211	140.03	139.45	141.07	-0.22696					84	32	4	0	0	0	0.73597	1	14062	14062		10.265	0	1	166850			56934	8630	46973	47015	62305	62305					0.10971563282521402
TKGVTITSLN	10	Unmodified	_TKGVTITSLN_					0	0	0		tr|A0A553ST64|A0A553ST64_NIACINlpC/P60familyproteinOS=NialliacirculansOX=1397GN=CEQ21_04315PE=3SV=1	tr|A0A553ST64|A0A553ST64_NIACINlpC/P60familyproteinOS=NialliacirculansOX=1397GN=CEQ21_04315PE=3SV=1	tr|A0A553ST64|A0A553ST64_NIACINlpC/P60familyproteinOS=NialliacirculansOX=1397GN=CEQ21_04315PE=3SV=1	MSMS	OvCa99_classI_Rep5	1	517.2998046875	2	517.298039	1032.58152	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.024	1	64.024	63.524	64.524	0								0	0	0	0.12201	1	5798	5798		60.118	1.3363	1				56935	34462	46974	47016	62306	62306					0.06653708269141134
TKHHKKKKKK	10	Unmodified	_TKHHKKKKKK_					0	0	0		nc|ENSG00000197579|Q9NS56-2|TOPORS;ENSG00000197579|ENST00000360538|TOPORS	nc|ENSG00000197579|Q9NS56-2|TOPORS	nc|ENSG00000197579|Q9NS56-2|TOPORS	MULTI-SECPEP	OvCa9_classI_Rep2	2	646.3593139648438	2	645.92768	1289.84081	-1.8403	-0.0011887	3.3369	0.0021554	1.4966	0.00096671	646.4306778653361	60.667	0.15712	57.897	57.766	57.923	-2.7702					4	2	2	0	0	0	0.027284	1	4479	4479		5.5578	4.8677	1	14872			56936	8725	46975	47017	62307	62307					0.2074812374157773
TKHSTQPSI	9	Unmodified	_TKHSTQPSI_					0	0	0			REV__nc|ENSG00000133401|O15018-2|PDZD2	REV__nc|ENSG00000133401|O15018-2|PDZD2	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.7677307128906	2	499.766906	997.519259	-0.14707	-7.3502E-05	-0.43133	-0.00021556	-0.5784	-0.00028907	499.76672181422185	66.809	2.3076	63.319	62.756	65.064	-3.4902					120	46	4	0	0	0	0.1149	1	4923	4923		93.143	4.9663	1	4232900	+		56937	19143	46976	47018	62308	62308					0.020399819208023473
TKHWSTQI	8	Unmodified	_TKHWSTQI_					0	0	0		L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|38|1|sense	L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|38|1|sense	L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|38|1|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.8280944824219	2	500.764166	999.513779	-0.85813	-0.00042972	-4.0452	-0.0020257	-4.9033	-0.0024554	500.76206946061626	74.023	1.2089	72.052	71.43	72.639	-1.9711					31	22	2	0	0	0	0.028476	1	6047	6047		90.777	0	1	34388			56938	14579	46977	47019	62309	62309					0.01400303128991709
TKIALREMK	9	Unmodified	_TKIALREMK_					0	0	0		ENST00000460138.5_1_6:7883030-7883099:-|nuORF	ENST00000460138.5_1_6:7883030-7883099:-|nuORF	ENST00000460138.5_1_6:7883030-7883099:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	546.30029296875	2	545.326076	1088.6376	0.037432	2.0413E-05	-2.6625	-0.0014519	-2.6251	-0.0014315	545.3246151126275	72.003	0.44035	69.4	69.18	69.62	-2.6023					20	8	3	0	0	0	0.027462	1	3405	3405		14.865	0	1	95176			56939	12149	46978	47020	62310	62310					0.09682637904961666
TKIFIRSPKTL	11	Unmodified	_TKIFIRSPKTL_					0	0	0		ENSG00000166866|ENST00000300119|MYO1A	ENSG00000166866|ENST00000300119|MYO1A	ENSG00000166866|ENST00000300119|MYO1A	MULTI-SECPEP	OvCa99_classI_Rep5	1	436.2532958984375	3	435.274729	1302.80236	-0.26725	-0.00011633	-1.4145	-0.00061568	-1.6817	-0.00073201	435.2730473718669	37.059	0.22837	37.059	36.931	37.159	0					6	4	2	0	0	0	0.025863	1	2005	2005		14.779	0	1	10692			56940	6726	46979	47021	62311	62311					0.16306773316409817
TKILKYTTR	9	Unmodified	_TKILKYTTR_					0	0	0			REV__ENSG00000158486|ENST00000698260|DNAH3	REV__ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	OvCa9_classI_Rep2	2	562.3428344726562	2	562.345323	1122.67609	-1.142	-0.00064221	-2.621	-0.0014739	-3.7631	-0.0021161	562.3438081477608	141.84	4.7959	141.62	140.24	145.03	-0.22697					133	96	2	0	0	0	0.70914	1	14404	14404		14.865	0.72775	1	113870	+		56941	20568	46980	47022	62312	62312					0.11966266811100468
TKILSVFDLL	10	Unmodified	_TKILSVFDLL_					0	0	0			REV__tr|A0A553SH77|A0A553SH77_NIACIYdbS-likePHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12315PE=4SV=1	REV__tr|A0A553SH77|A0A553SH77_NIACIYdbS-likePHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12315PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	574.8358764648438	2	574.849907	1147.68526	0.96171	0.00055284	3.4506	0.0019836	4.4123	0.0025364	574.8519117249962	90.057	0.59372	88.755	88.68	89.274	-1.302					20	11	2	0	0	0	0.02663	1	7959	7959		42.864	0	1	63755	+		56942	29781	46981	47023	62313	62313					0.1173261537678627
TKINFPTVVKM	11	Unmodified	_TKINFPTVVKM_					0	0	0			REV__ENST00000269503.8_1_18:70211258-70211360:-|nuORF	REV__ENST00000269503.8_1_18:70211258-70211360:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	639.3627319335938	2	639.367941	1276.72133	-4.8017	-0.0030701	-2.7212	-0.0017399	-7.5229	-0.0048099	639.3660260364965	154.07	1.1512	153.84	153.46	154.62	-0.22696					54	23	3	0	0	0	0.68391	1	15685	15685		35.178	15.181	1	99157	+		56943	24065	46982	47024	62314	62314					0.0940374928197798
TKIRPRGENVL	11	Unmodified	_TKIRPRGENVL_					0	0	0			REV__nc|ENSG00000173193|Q460N5-3|PARP14	REV__nc|ENSG00000173193|Q460N5-3|PARP14	MULTI-MSMS	OvCa9_classI_Rep2	2	641.882568359375	2	641.883136	1281.75172	-4.6434	-0.0029805	3.7859	0.0024301	-0.85746	-0.00055039	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.72491	1	15717	15717		16.717	3.9057	1	543390	+		56944	21755	46983	47025	62315	62315					0.12211243991418996
TKKAIQDSGIP	11	Unmodified	_TKKAIQDSGIP_					0	0	0		tr|A0A553SGN5|A0A553SGN5_NIACIBifunctionalpurinebiosynthesisproteinPurHOS=NialliacirculansOX=1397GN=purHPE=3SV=1	tr|A0A553SGN5|A0A553SGN5_NIACIBifunctionalpurinebiosynthesisproteinPurHOS=NialliacirculansOX=1397GN=purHPE=3SV=1	tr|A0A553SGN5|A0A553SGN5_NIACIBifunctionalpurinebiosynthesisproteinPurHOS=NialliacirculansOX=1397GN=purHPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.7763061523438	2	579.32987	1156.64519	2.1528	0.0012472	-0.22732	-0.00013169	1.9255	0.0011155	579.3295645644142	75.926	0.75755	75.926	75.723	76.48	0					32	18	3	0	0	0	0.026007	1	7568	7568		8.2351	0	1	677060			56945	33177	46984	47026	62316	62316					0.07313068706230297
TKKALIKEYT	10	Unmodified	_TKKALIKEYT_					0	0	0		ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	ENSG00000138160|ENST00000260731|KIF11	MSMS	OvCa9_classI_Rep4_	4	597.8564453125	2	597.858264	1193.70197	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.7	1	148.26	147.76	148.76	-1.4344								0	0	0	0.13748	1	14772	14772		26.693	0	1				56946	4663	46985	47027	62317	62317					0.11287116262769814
TKKAVVDSD	9	Unmodified	_TKKAVVDSD_					0	0	0		nc|ENSG00000145833|Q7L014|DDX46;ENSG00000145833|ENST00000452510|DDX46	nc|ENSG00000145833|Q7L014|DDX46	nc|ENSG00000145833|Q7L014|DDX46	MULTI-MSMS	OvCa9_classI_Rep2	2	481.7584228515625	2	481.761289	961.508025	-1.5336	-0.00073885	-4.0462	-0.0019493	-5.5798	-0.0026881	481.75923629310296	38.538	1.3354	35.828	35.519	36.854	-2.7097					43	26	2	0	0	0	0.67509	1	1824	1824		23.042	0.0057756	1	60064			56947	5247	46986	47028	62318	62318					0.025731598266588662
TKKDDGGAPIL	11	Unmodified	_TKKDDGGAPIL_					0	0	0		NCAM2|p.Q616K|1|0.38|ENSG00000154654|chr21:21468733-21468733|C/A|missense_variant	NCAM2|p.Q616K|1|0.38|ENSG00000154654|chr21:21468733-21468733|C/A|missense_variant	NCAM2|p.Q616K|1|0.38|ENSG00000154654|chr21:21468733-21468733|C/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	558.3323364257812	2	557.808771	1113.60299	-0.89041	-0.00049668	-4.1149	-0.0022953	-5.0053	-0.002792	558.3074625701634	89.562	1.156	87.481	86.848	88.004	-2.0805					27	22	2	0	0	0	0.025406	1	5567	5567		54.722	10.345	1	31118			56948	15421	46987	47029	62319	62319					0.05073093297869491
TKKHSDLVLS	10	Unmodified	_TKKHSDLVLS_					0	0	0			REV__ENSG00000155719|ENST00000646100|OTOA	REV__ENSG00000155719|ENST00000646100|OTOA	MULTI-MSMS	OvCa9_classI_Rep2	2	564.3241577148438	2	564.324588	1126.63462	-1.0002	-0.00056441	0.016008	9.0339E-06	-0.98414	-0.00055538	564.3245968274675	101.36	2.2253	100.59	100.22	102.45	-0.76401					148	44	6	0	0	0	0.38315	1	9341	9341		70.816	7.3897	1	4635900	+		56949	20436	46988	47030	62320	62320					0.0763708605179545
TKKILCWMLC	10	Unmodified	_TKKILCWMLC_					0	0	0		ENST00000382044.8_1_15:43784217-43784558:-|nuORF	ENST00000382044.8_1_15:43784217-43784558:-|nuORF	ENST00000382044.8_1_15:43784217-43784558:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	619.857177734375	2	619.82654	1237.63853	0.78401	0.00048595	2.8135	0.0017439	3.5975	0.0022298	619.8280643449394	156.49	0.95575	156.49	156.14	157.1	0					45	18	3	0	0	0	0.66944	1	18317	18317		29.15	0	1	179170			56950	11174	46989	47031	62321	62321					0.02921392958000979
TKKIPTVNR	9	Unmodified	_TKKIPTVNR_					0	0	0		nc|ENSG00000064607|Q8IX01-4|SUGP2;nc|ENSG00000064607|Q8IX01-3|SUGP2;ENSG00000064607|ENST00000452918|SUGP2;SUGP2|p.D303Vfs*22|1|0.07|ENSG00000064607|chr19:19025440-19025441|-/TCACAGATGCAATCATAGGTCA|frameshift_variant	nc|ENSG00000064607|Q8IX01-4|SUGP2	nc|ENSG00000064607|Q8IX01-4|SUGP2	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.3125	2	528.82984	1055.64513	-1.0816	-0.000572	-0.25718	-0.00013601	-1.3388	-0.00070801	528.828992041043	74.543	1.2498	72.572	72.062	73.312	-1.9711					64	23	4	0	0	0	0.027461	1	6067	6067		40.778	25.913	1	63741			56951	1301	46990	47032	62322	62322					0.11953113496861079
TKKKKKKFYTD	11	Unmodified	_TKKKKKKFYTD_					0	0	0			REV__ENST00000426826.2_1_1:150026325-150026897:+|nuORF	REV__ENST00000426826.2_1_1:150026325-150026897:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	472.2823791503906	3	472.285405	1413.83439	-4.9212	-0.0023242	1.0993	0.00051918	-3.8219	-0.001805	472.28593650401154	158.64	2.575	158.42	157.5	160.08	-0.22696					106	62	3	0	0	0	0.72516	1	16068	16068		13.508	0	1	56212	+		56952	25671	46991	47033	62323	62323					0.14402140999550284
TKKKMKEKH	9	Unmodified	_TKKKMKEKH_					0	0	0			REV__ENST00000522352.5_1_8:109214066-109214144:-|nuORF	REV__ENST00000522352.5_1_8:109214066-109214144:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	579.8414916992188	2	579.3448	1156.67505	0.246	0.00014252	-4.4029	-0.0025508	-4.1569	-0.0024083	579.842763234047	160.4	0.55214	160.4	160.21	160.76	0					14	10	2	0	0	0	0.59311	1	18814	18814		32.751	2.4328	1	77610	+		56953	27083	46992	47034	62324	62324					0.10297729170588354
TKKNFSSLL	9	Unmodified	_TKKNFSSLL_					0	0	0		tr|A0A7D6W1U3|A0A7D6W1U3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04495PE=4SV=1	tr|A0A7D6W1U3|A0A7D6W1U3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04495PE=4SV=1	tr|A0A7D6W1U3|A0A7D6W1U3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04495PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.7787475585938	2	519.303124	1036.5917	0.71504	0.00037132	-0.86502	-0.00044921	-0.14998	-7.7883E-05	519.3025411330746	111.93	0.93652	111.79	111.47	112.41	-0.13961					30	18	2	0	0	0	0.027459	1	10644	10644		44.377	0	1	71323			56954	35417	46993	47035	62325	62325					0.07486315994378856
TKKPVVNII	9	Unmodified	_TKKPVVNII_					0	0	0		ENSG00000115919|ENST00000264170|KYNU	ENSG00000115919|ENST00000264170|KYNU	ENSG00000115919|ENST00000264170|KYNU	MULTI-MSMS	OvCa9_classI_Rep2	2	506.3309020996094	2	506.331685	1010.64882	-0.48567	-0.00024591	0.50848	0.00025746	0.02281	1.155E-05	506.33188661899624	122.71	0.88946	122.49	122.22	123.11	-0.21803					45	17	3	0	0	0	0.51865	1	11896	11896		40.778	0	1	120630			56955	3137	46994	47036	62326	62326					0.14391783270752967
TKKQESNLLP	10	Unmodified	_TKKQESNLLP_					0	0	0			REV__nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	REV__nc|ENSG00000177853|Q6AHZ1-2|ZNF518A	MULTI-SECPEP	OvCa9_classI_Rep3	3	579.3123168945312	2	579.32987	1156.64519	-1.2885	-0.0007465	-2.7212	-0.0015765	-4.0097	-0.0023229	579.3287356015968	99.616	0.20883	97.931	97.829	98.038	-1.685					5	3	2	0	0	0	0.026936	1	6709	6709		74.255	10.048	1	10430	+		56956	22028	46995	47037	62327	62327					0.07313068706230297
TKKRKESP	8	Unmodified	_TKKRKESP_					0	0	0			REV__ENSG00000055483|ENST00000449938|USP36	REV__ENSG00000055483|ENST00000449938|USP36	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.7921447753906	2	487.293091	972.571629	-0.71264	-0.00034726	-3.5889	-0.0017489	-4.3016	-0.0020961	487.2914108810801	81.864	0.81914	79.181	78.865	79.684	-2.6829					31	16	3	0	0	0	0.028476	1	6760	6760		40.778	11.629	1	199520	+		56957	16711	46996	47038	62328	62328					0.08424565054417599
TKKRKESP	8	Unmodified	_TKKRKESP_					0	0	0			REV__ENSG00000055483|ENST00000449938|USP36	REV__ENSG00000055483|ENST00000449938|USP36	MULTI-MATCH	OvCa9_classI_Rep2	2		2	487.293091	972.571629	0.56656	0.00027608	-4.6915	-0.0022861	-4.1249	-0.00201	487.29079168197137	81.003	0.95565	79.354	78.964	79.919	-1.6485	0.086618	-0.00034277	NaN	37.812	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116990	+		56958	16711	46996	47038							0.08424565054417599
TKKRKKKL	8	Unmodified	_TKKRKKKL_					0	0	0			REV__ENST00000369484.7_3_X:154290140-154290236:-|nuORF	REV__ENST00000369484.7_3_X:154290140-154290236:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.283447265625	2	515.366393	1028.71823	0.95411	0.00049172	1.5233	0.00078504	2.4774	0.0012768	515.3672972673212	106.56	0.15667	105.29	105.22	105.37	-1.267					4	2	2	0	0	0	0.028476	1	7516	7516		18.324	0	1	6845.1	+		56959	24939	46997	47039	62329	62329					0.20502287010162945
TKKSVSGT	8	Unmodified	_TKKSVSGT_					0	0	0			REV__tr|A0A553SGM2|A0A553SGM2_NIACIDNAligaseOS=NialliacirculansOX=1397GN=ligAPE=3SV=1	REV__tr|A0A553SGM2|A0A553SGM2_NIACIDNAligaseOS=NialliacirculansOX=1397GN=ligAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	404.232666015625	2	404.232168	806.449782	1.4985	0.00060574	0.40137	0.00016225	1.8999	0.00076799	404.2322157005619	134.25	0.93222	134.02	133.46	134.39	-0.22697					47	18	3	0	0	0	0.75006	1	13324	13324		16.473	1.809	1	139150	+		56960	29719	46998	47040	62330	62330					0.03881522972062612
TKKVGKKKI	9	Unmodified	_TKKVGKKKI_					0	0	0			REV__ENSG00000102974|ENST00000264010|CTCF	REV__ENSG00000102974|ENST00000264010|CTCF	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.3360595703125	2	515.360776	1028.707	0.37086	0.00019113	2.145	0.0011054	2.5159	0.0012966	515.3624000409868	45.592	0.25816	45.592	45.496	45.754	0					6	5	2	0	0	0	0.027462	1	3161	3161		15.642	3.435	1	91799	+		56961	17585	46999	47041	62331	62331					0.19379464916050892
TKKVVTIGSIK	11	Unmodified	_TKKVVTIGSIK_					0	0	0			REV__tr|A0A7D6ZWZ1|A0A7D6ZWZ1_9CLOTAlanyl-tRNAeditingproteinAlaX-LOS=ClostridiumintestinaleOX=36845GN=HZF06_21065PE=4SV=1	REV__tr|A0A7D6ZWZ1|A0A7D6ZWZ1_9CLOTAlanyl-tRNAeditingproteinAlaX-LOS=ClostridiumintestinaleOX=36845GN=HZF06_21065PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.3082885742188	2	587.381906	1172.74926	2.121	0.0012458	1.3816	0.0008115	3.5025	0.0020573	587.3826616659907	82.501	0.93349	82.501	82.101	83.035	0					62	21	4	0	0	0	0.025864	1	8513	8513		20.03	0	1	2817200	+		56962	32306	47000	47042	62332	62332					0.1697939553375818
TKKWLVFFIT	10	Unmodified	_TKKWLVFFIT_					0	0	0			REV__ELOVL2|p.R136W|1|0.37|ENSG00000197977|chr6:10995106-10995106|G/A|missense_variant	REV__ELOVL2|p.R136W|1|0.37|ENSG00000197977|chr6:10995106-10995106|G/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	428.2683410644531	3	428.256787	1281.74853	-1.0294	-0.00044085	-3.6589	-0.0015669	-4.6883	-0.0020078	428.25531282302313	56.666	0.94237	53.862	53.572	54.515	-2.804					25	18	2	0	0	0	0.026666	1	3993	3993		43.651	13.082	1	27102	+		56963	16352	47001	47043	62333	62333					0.1189260088467563
TKKYLSLEKER	11	Unmodified	_TKKYLSLEKER_					0	0	0			REV__IGSF9B|p.L1050Afs*16|1|0.11|ENSG00000080854|chr11:133920577-133920578|-/C|frameshift_variant	REV__IGSF9B|p.L1050Afs*16|1|0.11|ENSG00000080854|chr11:133920577-133920578|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.6043395996094	3	465.604915	1393.79291	-0.19204	-8.9413E-05	0.0032623	1.519E-06	-0.18877	-8.7895E-05	465.6048829679583	21.88	1.1908	20.541	20.321	21.512	-1.3386					57	24	4	0	0	0	0.71338	1	232	232		25.068	2.5062	1	168570	+		56964	17061	47002	47044	62334	62334					0.11176960240209155
TKLAAAKV	8	Unmodified	_TKLAAAKV_					0	0	0		tr|A0A7D6VUZ5|A0A7D6VUZ5_9CLOTGlutamate5-kinaseOS=ClostridiumintestinaleOX=36845GN=proBPE=3SV=1	tr|A0A7D6VUZ5|A0A7D6VUZ5_9CLOTGlutamate5-kinaseOS=ClostridiumintestinaleOX=36845GN=proBPE=3SV=1	tr|A0A7D6VUZ5|A0A7D6VUZ5_9CLOTGlutamate5-kinaseOS=ClostridiumintestinaleOX=36845GN=proBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	401.261474609375	2	401.263271	800.511988	1.296	0.00052003	-4.2066	-0.001688	-2.9106	-0.0011679	401.26147123184654	136.26	1.7613	136.04	135.22	136.99	-0.22696					76	35	3	0	0	0	0.74209	1	13492	13492		12.959	0	1	533840			56965	35204	47003	47045	62335	62335					0.10375294111031508
TKLAESTIL	9	Unmodified	_TKLAESTIL_					0	0	0		nc|ENSG00000133958|Q9P2D8-2|UNC79;nc|ENSG00000133958|Q9P2D8|UNC79;nc|ENSG00000133958|Q9P2D8-3|UNC79;ENSG00000133958|ENST00000695012|UNC79	nc|ENSG00000133958|Q9P2D8-2|UNC79	nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.7673034667969	2	488.289682	974.564812	-0.20177	-9.852E-05	0.3729	0.00018208	0.17113	8.3563E-05	488.28992400964535	89.089	1.0368	86.486	86.085	87.122	-2.6027					35	20	2	0	0	0	0.027462	1	7701	7701		20.947	3.582	1	40355			56966	4243	47004	47046	62336	62336					0.0765120738318501
TKLAESTIL	9	Unmodified	_TKLAESTIL_					0	0	0		nc|ENSG00000133958|Q9P2D8-2|UNC79;nc|ENSG00000133958|Q9P2D8|UNC79;nc|ENSG00000133958|Q9P2D8-3|UNC79;ENSG00000133958|ENST00000695012|UNC79	nc|ENSG00000133958|Q9P2D8-2|UNC79	nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-MATCH	OvCa9_classI_Rep2	2		2	488.289682	974.564812	1.9589	0.00095653	-1.9034	-0.00092942	0.055524	2.7112E-05	488.28862441584914	87.935	1.0774	86.504	86.139	87.217	-1.4311	-0.030047	-0.0015735	NaN	14.865	38	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33017			56967	4243	47004	47046							0.0765120738318501
TKLAESTIL	9	Unmodified	_TKLAESTIL_					0	0	0		nc|ENSG00000133958|Q9P2D8-2|UNC79;nc|ENSG00000133958|Q9P2D8|UNC79;nc|ENSG00000133958|Q9P2D8-3|UNC79;ENSG00000133958|ENST00000695012|UNC79	nc|ENSG00000133958|Q9P2D8-2|UNC79	nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-MATCH	OvCa9_classI_Rep3	3		2	488.289682	974.564812	-0.81331	-0.00039713	0.55207	0.00026957	-0.26124	-0.00012756	488.2900028262003	88.743	1.2255	86.612	86.163	87.388	-2.1309	0.078083	0.00082443	NaN	14.865	51	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41727			56968	4243	47004	47046							0.0765120738318501
TKLFCTFVL	9	Unmodified	_TKLFCTFVL_					0	0	0			REV__chr16:69121493-69128939|158|12.82|0.27|5.57|-|0|TE_info:AluSg,AluSg_dup29683,Alu,SINE,donor,+,69128939,69129096|DERPC,None|4	REV__chr16:69121493-69128939|158|12.82|0.27|5.57|-|0|TE_info:AluSg,AluSg_dup29683,Alu,SINE,donor,+,69128939,69129096|DERPC,None|4	MULTI-SECPEP	OvCa9_classI_Rep2	2	535.813232421875	2	536.298996	1070.58344	-0.92325	-0.00049514	4.2491	0.0022788	3.3259	0.0017837	536.3011485375073	95.613	0.74481	94.585	94.268	95.013	-1.0281					28	14	3	0	0	0	0.027462	1	8586	8586		16.473	0	1	123610	+		56969	15937	47005	47047	62337	62337					0.050970457534049274
TKLFRRFI	8	Unmodified	_TKLFRRFI_					0	0	0		ENST00000371602.8_1_20:49509224-49509335:-|nuORF	ENST00000371602.8_1_20:49509224-49509335:-|nuORF	ENST00000371602.8_1_20:49509224-49509335:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	540.8353881835938	2	540.837468	1079.66038	-5.2438	-0.002836	3.6822	0.0019915	-1.5616	-0.00084459	540.8393986212155	155.73	1.3013	154.66	154.09	155.39	-1.073					54	36	2	0	0	0	0.75915	1	13389	13389		20.482	1.1219	1	14420			56970	10961	47006	47048	62338	62338					0.12374025084750429
TKLGCTAGLLI	11	Unmodified	_TKLGCTAGLLI_					0	0	0			REV__ENSG00000184207|ENST00000333503|PGP	REV__ENSG00000184207|ENST00000333503|PGP	MULTI-MSMS	OvCa9_classI_Rep3	3	545.316650390625	2	545.32046	1088.62637	-2.8527	-0.0015556	-4.0579	-0.0022129	-6.9106	-0.0037685	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.69808	1	11687	11687		30.318	1.1477	1	337600	+		56971	22412	47007	47049	62339	62339					0.08559815810826876
TKLHKMREI	9	Unmodified	_TKLHKMREI_					0	0	0			REV__ENSG00000138075|ENST00000405322|ABCG5	REV__ENSG00000138075|ENST00000405322|ABCG5	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.30517578125	2	578.336975	1154.6594	0.10638	6.1523E-05	-1.821	-0.0010532	-1.7146	-0.00099164	578.3381671651931	161.98	0.46039	161.98	161.72	162.18	0					15	8	3	0	0	0	0.027462	1	19002	19002		23.523	0	1	22462	+		56972	19506	47008	47050	62340	62340					0.08825442653551363
TKLKRAIPE	9	Unmodified	_TKLKRAIPE_					0	0	0			REV__L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|122|3|sense	REV__L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|122|3|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.31494140625	2	528.332216	1054.64988	-0.62455	-0.00032997	-3.3559	-0.001773	-3.9805	-0.002103	528.3299408601949	75.364	0.29036	72.133	72.012	72.302	-3.2308					7	5	2	0	0	0	0.027462	1	5947	5947		30.504	12.179	1	27014	+		56973	28523	47009	47051	62341	62341					0.12473997639631307
TKLLLLLDK	9	Unmodified	_TKLLLLLDK_					0	0	0			REV__ENSG00000221829|ENST00000378643|FANCG	REV__ENSG00000221829|ENST00000378643|FANCG	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.8422241210938	2	528.854993	1055.69543	-0.057619	-3.0472E-05	2.2913	0.0012118	2.2337	0.0011813	528.8561399051357	72.297	0.14895	69.695	69.571	69.72	-2.6023					4	2	2	0	0	0	0.027462	1	3433	3433		22.58	8.4425	1	6771.7	+		56974	23340	47010	47052	62342	62342					0.16981223102015974
TKLLRIGFK	9	Unmodified	_TKLLRIGFK_					0	0	0			REV__nc|ENSG00000100151|Q9NRD5-2|PICK1	REV__nc|ENSG00000100151|Q9NRD5-2|PICK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	539.2720336914062	2	538.352951	1074.69135	0.31802	0.00017121	-0.76763	-0.00041326	-0.44961	-0.00024205	538.3523201684673	67.452	1.5227	63.962	63.541	65.064	-3.4902					65	30	3	0	0	0	0.027462	1	4906	4906		10.866	0	1	130850	+		56975	17373	47011	47053	62343	62343					0.15699178398972435
TKLNKFLEL	9	Unmodified	_TKLNKFLEL_					0	0	0			REV__tr|A0A7D6VSK2|A0A7D6VSK2_9CLOTCrp/FnrfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23045PE=4SV=1	REV__tr|A0A7D6VSK2|A0A7D6VSK2_9CLOTCrp/FnrfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_23045PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.9608764648438	2	553.334424	1104.6543	1.1724	0.00064874	-1.6053	-0.00088826	-0.43287	-0.00023952	553.3331088272314	82.065	0.93734	80.416	80.023	80.961	-1.6485					34	17	3	0	0	0	0.027462	1	6996	6996		36.447	7.2767	1	51049	+		56976	31513	47012	47054	62344	62344					0.10615462062560255
TKLPVKTSLVN	11	Unmodified	_TKLPVKTSLVN_					0	0	0			REV__LRBA-SH3D19|1|fusion	REV__LRBA-SH3D19|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	600.3245849609375	2	600.371538	1198.72852	1.2084	0.00072546	0.9901	0.00059443	2.1985	0.0013199	600.3725489306587	156.49	0.30197	156.49	156.4	156.7	0					7	5	2	0	0	0	0.025656	1	18337	18337		32.751	5.7032	1	14502	+		56977	17943	47013	47055	62345	62345					0.13710805154096306
TKLQKKEET	9	Unmodified	_TKLQKKEET_					0	0	0			REV__tr|A0A553SSX2|A0A553SSX2_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_03850PE=4SV=1	REV__tr|A0A553SSX2|A0A553SSX2_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_03850PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	552.3029174804688	2	552.816596	1103.61864	-0.68017	-0.00037601	4.226	0.0023362	3.5458	0.0019602	552.8174057023957	102.88	0.94351	101.36	101.1	102.05	-1.5211					41	17	4	0	0	0	0.027309	1	7141	7141		61.691	8.6023	1	47513	+		56978	30890	47014	47056	62346	62346					0.07097379814899796
TKLRGSCVEGF	11	Unmodified	_TKLRGSCVEGF_					0	0	0			REV__nc|ENSG00000080224|Q9UF33-2|EPHA6	REV__nc|ENSG00000080224|Q9UF33-2|EPHA6	MULTI-MSMS	OvCa99_classI_Rep5	1	598.808349609375	2	598.808248	1195.60194	0.026446	1.5836E-05	-1.8058	-0.0010813	-1.7793	-0.0010655	598.8068491197229	104.98	0.52477	104.98	104.74	105.27	0					27	11	3	0	0	0	0.52842	1	11774	11774		51.193	11.94	1	800230	+		56979	17052	47015	47057	62347	62347					0.011965556572931746
TKLRGSCVEGF	11	Unmodified	_TKLRGSCVEGF_					0	0	0			REV__nc|ENSG00000080224|Q9UF33-2|EPHA6	REV__nc|ENSG00000080224|Q9UF33-2|EPHA6	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	598.808248	1195.60194	0.026446	1.5836E-05	-1.8058	-0.0010813	-1.7793	-0.0010655	598.8068491197229	104.98	0.52477	104.98	104.74	105.27	0	0	0	NaN	51.193	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	800230	+		56980	17052	47015	47057							0.011965556572931746
TKLSIKRFAM	10	Unmodified	_TKLSIKRFAM_					0	0	0			REV__ENSG00000164603|ENST00000297145|BMT2	REV__ENSG00000164603|ENST00000297145|BMT2	MSMS	OvCa9_classI_Rep4_	4	597.8562622070312	2	597.855001	1193.69545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	148.99	1	147.56	147.06	148.06	-1.4344								0	0	0	0.15238	1	14689	14689		47.657	6.2307	1		+		56981	21000	47016	47058	62348	62348					0.10634899830392897
TKLSKYNVPF	10	Unmodified	_TKLSKYNVPF_					0	0	0			REV__ENST00000523958.5_1_8:23291828-23307413:-|nuORF	REV__ENST00000523958.5_1_8:23291828-23307413:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	598.83837890625	2	598.837331	1195.66011	-0.083432	-4.9962E-05	1.7185	0.0010291	1.6351	0.00097914	598.8381161590047	81.237	0.7063	79.589	79.265	79.971	-1.6485					40	13	4	0	0	0	0.53807	1	6887	6887		49.536	3.5638	1	815950	+		56982	22902	47017	47059	62349	62349					0.07010560574212832
TKLSNLWLK	9	Unmodified	_TKLSNLWLK_					0	0	0		ENST00000542921.5_1_10:65024475-65028460:-|nuORF	ENST00000542921.5_1_10:65024475-65028460:-|nuORF	ENST00000542921.5_1_10:65024475-65028460:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	551.8314208984375	2	551.834591	1101.65463	-0.25095	-0.00013848	-0.62207	-0.00034328	-0.87302	-0.00048176	551.8341547217644	100.17	1.3886	99.337	99.014	100.4	-0.83051					70	27	4	0	0	0	0.33652	1	9181	9181		58.782	15.918	1	447510			56983	13483	47018	47060	62350	62350					0.10786881782405544
TKLSPARSTT	10	Unmodified	_TKLSPARSTT_					0	0	0		ENSG00000205277|ENST00000536621|MUC12;nc|ENSG00000205277|Q9UKN1|MUC12	ENSG00000205277|ENST00000536621|MUC12	ENSG00000205277|ENST00000536621|MUC12	MSMS	OvCa9_classI_Rep2	2	531.3012084960938	2	531.301113	1060.58767	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.67	1	33.96	33.46	34.46	-2.7097								0	0	0	0.14009	1	1585	1585		32.812	0.85756	1				56984	9061	47019	47061	62351	62351					0.059802265006510424
TKLSVGKL	8	Unmodified	_TKLSVGKL_					0	0	0		ENSG00000214700|ENST00000429849|C12orf71	ENSG00000214700|ENST00000429849|C12orf71	ENSG00000214700|ENST00000429849|C12orf71	MULTI-MSMS	OvCa9_classI_Rep4_	4	423.2751770019531	2	423.276378	844.538203	0.49298	0.00020867	-3.7053	-0.0015684	-3.2124	-0.0013597	423.27473332954634	141.2	1.9317	139.74	139.4	141.33	-1.4627					94	36	4	0	0	0	0.75006	1	13805	13805		16.473	0	1	1644700			56985	9179	47020	47062	62352	62352					0.10971563282521402
TKLTDINQL	9	Unmodified	_TKLTDINQL_					0	0	0		nc|ENSG00000029725|Q15276-2|RABEP1;ENSG00000029725|ENST00000537505|RABEP1	nc|ENSG00000029725|Q15276-2|RABEP1	nc|ENSG00000029725|Q15276-2|RABEP1	MULTI-MSMS	OvCa99_classI_Rep5	1	523.2994384765625	2	523.298039	1044.58152	1.5298	0.00080053	-0.16	-8.3727E-05	1.3698	0.00071681	523.2978511527525	81.989	1.2987	81.989	81.736	83.035	0					79	30	4	0	0	0	0.13326	1	8460	8460		88.177	5.9364	1	9925300			56986	1063	47021	47063	62353	62353					0.061017082691250835
TKLTEIYLV	9	Unmodified	_TKLTEIYLV_					0	0	0		ENST00000452973.6_1_6:142540853-142541078:+|nuORF	ENST00000452973.6_1_6:142540853-142541078:+|nuORF	ENST00000452973.6_1_6:142540853-142541078:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	539.7998046875	2	540.320983	1078.62741	-1.3882	-0.00075007	-1.9526	-0.001055	-3.3408	-0.0018051	540.3197286560912	65.559	1.018	62.073	61.84	62.858	-3.4854					32	20	2	0	0	0	0.027462	1	4700	4700		24.203	12.692	1	62598			56987	12060	47022	47064	62354	62354					0.091243534513751
TKLVTGEGNEV	11	Unmodified	_TKLVTGEGNEV_					0	0	0			REV__tr|A0A7D6VXG5|A0A7D6VXG5_9CLOTReplicationinitiatorproteinAOS=ClostridiumintestinaleOX=36845GN=HZF06_11955PE=4SV=1	REV__tr|A0A7D6VXG5|A0A7D6VXG5_9CLOTReplicationinitiatorproteinAOS=ClostridiumintestinaleOX=36845GN=HZF06_11955PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	573.7853393554688	2	573.803685	1145.59282	-1.1063	-0.0006348	1.7548	0.0010069	0.64853	0.00037213	574.3076516535918	80.689	0.63478	77.978	77.466	78.101	-2.7106					15	12	2	0	0	0	0.025306	1	6551	6551		37.508	7.1905	1	19333	+		56988	31776	47023	47065	62355	62355					0.025844855726290916
TKLVVKGT	8	Unmodified	_TKLVVKGT_					0	0	0			REV__ENST00000582608.5_1_17:80403674-80404562:-|nuORF	REV__ENST00000582608.5_1_17:80403674-80404562:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	423.27459716796875	2	423.276378	844.538203	-1.0746	-0.00045487	-1.9263	-0.00081535	-3.0009	-0.0012702	423.27545611036373	140.26	1.6211	140.03	139.45	141.07	-0.22696					84	32	4	0	0	0	0.75006	1	14068	14068		16.473	0.83134	1	166850	+		56989	22088	47024	47066	62356	62356					0.10971563282521402
TKLYCDEAMEY	11	Unmodified	_TKLYCDEAMEY_					0	0	0			REV__ENST00000510779.1_1_5:148384276-148408226:-|nuORF	REV__ENST00000510779.1_1_5:148384276-148408226:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.7672424316406	3	455.861556	1364.56284	1.1674	0.00053217	-0.19958	-9.0979E-05	0.96782	0.00044119	455.86149175281315	35.708	0.59873	32.859	32.54	33.139	-2.849					18	11	2	0	0	0	0.026033	1	1187	1187		22.562	5.8442	1	10525	+		56990	21449	47025	47067	62357	62357					-0.10485957479249919
TKLYLGKSND	10	Unmodified	_TKLYLGKSND_					0	0	0			REV__ENST00000594219.6_2_2:136759651-136764807:+|nuORF	REV__ENST00000594219.6_2_2:136759651-136764807:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	569.8085327148438	2	569.808771	1137.60299	-1.1862	-0.00067589	0.44632	0.00025432	-0.73985	-0.00042157	569.8088015615606	47.867	1.0435	45.157	44.836	45.879	-2.7097					42	20	3	0	0	0	0.49595	1	2946	2946		54.722	10.345	1	154260	+		56991	27977	47026	47068	62358	62358					0.03969093297860127
TKMLGKLEQI	10	Unmodified	_TKMLGKLEQI_					0	0	0			REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B	REV__nc|ENSG00000077935|Q8NDV3-2|SMC1B	MULTI-MSMS	OvCa9_classI_Rep4_	4	580.8397827148438	2	580.839017	1159.66348	-1.4543	-0.00084474	1.1995	0.0006967	-0.25486	-0.00014803	580.8393748358645	93.015	4.9536	90.508	87.869	92.823	-2.5072					166	99	4	0	0	0	0.43433	2	8114	8114;8128		63.534	4.7519	1	764120	+		56992	17017	47027	47069	62359;62360	62359					0.09003487356585538
TKMQKILQL	9	Unmodified	_TKMQKILQL_					0	0	0			REV__tr|A0A553SMC8|A0A553SMC8_NIACIbeta-glucosidaseOS=NialliacirculansOX=1397GN=bglXPE=3SV=1	REV__tr|A0A553SMC8|A0A553SMC8_NIACIbeta-glucosidaseOS=NialliacirculansOX=1397GN=bglXPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	551.8321533203125	2	551.836277	1101.658	-0.25095	-0.00013848	-3.6762	-0.0020287	-3.9272	-0.0021672	551.8341547217644	100.17	1.3886	99.337	99.014	100.4	-0.83051					70	27	4	0	0	0	0.22621	1	9151	9151		71.877	7.6702	1	447510	+		56993	30316	47028	47070	62361	62361					0.1112380856479831
TKMTDFNEFE	10	Unmodified	_TKMTDFNEFE_					0	0	0			REV__nc|ENSG00000186976|Q5THR3-5|EFCAB6	REV__nc|ENSG00000186976|Q5THR3-5|EFCAB6	MULTI-MSMS	OvCa99_classI_Rep5	1	631.2755737304688	2	631.273903	1260.53325	1.1771	0.00074306	1.2476	0.00078758	2.4247	0.0015306	631.2749015161476	141.96	1.3843	141.96	141.64	143.02	0					71	27	5	0	0	0	0.63752	1	16580	16580		37.508	2.3561	1	972290	+		56994	22624	47029	47071	62362	62362					-0.0865915343308643
TKMVRFKK	8	Unmodified	_TKMVRFKK_					0	0	0		nc|ENSG00000119139|Q9UDY2-5|TJP2;nc|ENSG00000119139|Q9UDY2-4|TJP2;nc|ENSG00000119139|Q9UDY2-2|TJP2;TJP2|p.S1031Dfs*21|1|0.05|ENSG00000119139|chr9:69251132-69251133|-/TG|frameshift_variant;nc|ENSG00000119139|Q9UDY2-6|TJP2;nc|ENSG00000119139|Q9UDY2-3|TJP2;ENSG00000119139|ENST00000377245|TJP2;nc|ENSG00000119139|Q9UDY2-7|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	nc|ENSG00000119139|Q9UDY2-5|TJP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.3033447265625	2	519.318054	1036.62156	-1.0259	-0.00053276	0.77433	0.00040212	-0.25155	-0.00013064	519.31849043486	66.401	0.34367	62.911	62.805	63.148	-3.4902					9	6	2	0	0	0	0.028476	1	4849	4849		11.511	3.2797	1	19842			56995	3344	47030	47072	62363	62363					0.10470976458714176
TKNEANLLL	9	Unmodified	_TKNEANLLL_					0	0	0			REV__ENSG00000196227|ENST00000360816|FAM217B	REV__ENSG00000196227|ENST00000360816|FAM217B	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.2906188964844	2	508.292756	1014.57096	-0.45487	-0.00023121	-0.036204	-1.8402E-05	-0.49108	-0.00024961	508.2925640256571	116.78	1.6739	115.41	115.09	116.77	-1.3645					67	31	4	0	0	0	0.16562	1	10899	10899		82.241	2.7895	1	313250	+		56996	22803	47031	47073	62364	62364					0.06425725614712974
TKNEYFEL	8	Unmodified	_TKNEYFEL_					0	0	0		ENSG00000184564|ENST00000647374|SLITRK6	ENSG00000184564|ENST00000647374|SLITRK6	ENSG00000184564|ENST00000647374|SLITRK6	MULTI-SECPEP	OvCa9_classI_Rep3	3	523.2425537109375	2	522.25584	1042.49713	-0.17575	-9.1786E-05	-3.2336	-0.0016888	-3.4094	-0.0017806	522.2542446916398	132.3	0.89275	131.18	130.94	131.83	-1.1249					19	17	2	0	0	0	0.028476	1	10571	10571		38.806	3.6054	1	19661			56997	8170	47032	47074	62365	62365					-0.022422425476179342
TKNHVLVL	8	Unmodified	_TKNHVLVL_					0	0	0		ENSG00000173198|ENST00000373304|CYSLTR1	ENSG00000173198|ENST00000373304|CYSLTR1	ENSG00000173198|ENST00000373304|CYSLTR1	MULTI-MSMS	OvCa9_classI_Rep2	2	462.287109375	2	462.287277	922.560001	-1.6663	-0.0007703	0.90288	0.00041739	-0.7634	-0.00035291	462.28766330557994	85.301	1.5459	83.81	83.357	84.903	-1.4906					91	30	4	0	0	0	0.57734	1	7403	7403		68.787	0.30212	1	1328200			56998	7357	47033	47075	62366	62366					0.09562368031083679
TKNHVLVL	8	Unmodified	_TKNHVLVL_					0	0	0		ENSG00000173198|ENST00000373304|CYSLTR1	ENSG00000173198|ENST00000373304|CYSLTR1	ENSG00000173198|ENST00000373304|CYSLTR1	MULTI-MSMS	OvCa9_classI_Rep3	3	462.28839111328125	2	462.287277	922.560001	-1.1628	-0.00053756	0.69157	0.00031971	-0.47125	-0.00021785	462.2875389859225	85.812	1.6052	83.592	83.235	84.84	-2.2204					92	31	4	0	0	0	0.38598	1	5094	5094		90.777	2.1338	1	2379500			56999	7357	47033	47075	62367	62367					0.09562368031083679
TKNKKLCLRA	10	Unmodified	_TKNKKLCLRA_					0	0	0			REV__AluSz_dup39154|chr7:73736239-73736539:-|3.4662623341842957|0.0472943159261973|6.2|420.0|4|1|sense	REV__AluSz_dup39154|chr7:73736239-73736539:-|3.4662623341842957|0.0472943159261973|6.2|420.0|4|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.7752075195312	2	587.858075	1173.7016	-0.93711	-0.00055089	2.145	0.001261	1.2079	0.00071008	588.3617881258408	36.51	0.2708	36.51	36.304	36.575	0					8	5	2	0	0	0	0.027088	1	1936	1936		14.137	0	1	42903	+		57000	15616	47034	47076	62368	62368					0.12169418061876058
TKNKLYNII	9	Unmodified	_TKNKLYNII_					0	0	0			REV__tr|A0A553ST82|A0A553ST82_NIACI3-oxoacyl-ACPreductaseOS=NialliacirculansOX=1397GN=CEQ21_04260PE=3SV=1	REV__tr|A0A553ST82|A0A553ST82_NIACI3-oxoacyl-ACPreductaseOS=NialliacirculansOX=1397GN=CEQ21_04260PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	553.8107299804688	2	553.832049	1105.64954	-0.6381	-0.0003534	0.41134	0.00022782	-0.22676	-0.00012558	553.8322537069309	98.981	1.7048	97.296	96.491	98.196	-1.685					52	32	2	0	0	0	0.027462	1	6548	6548		31.955	6.3808	1	82764	+		57001	30928	47035	47077	62369	62369					0.10094577919812764
TKNLTPLLN	9	Unmodified	_TKNLTPLLN_					0	0	0			REV__HERVH-int_dup93|chr1:54900195-54903183:-|1.1315455096136964|0.040738276592419|4.8|412.0|35|2|sense	REV__HERVH-int_dup93|chr1:54900195-54903183:-|1.1315455096136964|0.040738276592419|4.8|412.0|35|2|sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.2837219238281	2	507.303124	1012.5917	-1.424	-0.0007224	-4.3237	-0.0021934	-5.7477	-0.0029158	507.8014788665089	83.052	0.69566	80.756	80.48	81.176	-2.2963					23	13	2	0	0	0	0.027425	1	4689	4689		51.193	0	1	62495	+		57002	15819	47036	47078	62370	62370					0.0859031599438822
TKNTKSALYKL	11	Unmodified	_TKNTKSALYKL_					0	0	0		ENST00000480074.1_1_7:143892998-143904870:+|nuORF;ENST00000460955.5_1_7:143892630-143904870:+|nuORF	ENST00000480074.1_1_7:143892998-143904870:+|nuORF	ENST00000480074.1_1_7:143892998-143904870:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	422.91900634765625	3	422.918722	1265.73434	-0.42407	-0.00017935	1.0922	0.0004619	0.6681	0.00028255	422.9191804294928	74.511	2.5984	72.54	72.114	74.713	-1.9711					157	49	5	0	0	0	0.38584	1	6113	6113		62.166	19.302	1	1026300			57003	12164	47037	47079	62371	62371					0.11209903665758247
TKNWKNGI	8	Unmodified	_TKNWKNGI_					0	0	0			REV__ENST00000296161.8_1_3:122291363-122291441:+|nuORF	REV__ENST00000296161.8_1_3:122291363-122291441:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.7689208984375	2	480.766709	959.518865	0.11463	5.511E-05	-0.42615	-0.00020488	-0.31152	-0.00014977	480.76637305248687	56.948	2.4306	53.603	52.668	55.098	-3.3449					134	47	4	0	0	0	0.67745	1	3664	3664		47.916	0	1	828540	+		57004	24198	47038	47080	62372	62372					0.03748606991609904
TKPAKVLGK	9	Unmodified	_TKPAKVLGK_					0	0	0		ENSG00000155324|ENST00000285689|GRAMD2B;ENST00000513913.5_1_5:125759298-125781179:+|nuORF	ENSG00000155324|ENST00000285689|GRAMD2B	ENSG00000155324|ENST00000285689|GRAMD2B	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.3105163574219	2	471.310752	940.606951	0.63501	0.00029929	-0.99591	-0.00046938	-0.36089	-0.00017009	471.31024904441927	22.362	2.2823	21.024	20.523	22.806	-1.3386					219	69	5	0	0	0	0.5811	1	363	363		34.173	3.6689	1	1692100			57005	5780	47039	47081	62373	62373					0.13427227582246815
TKPIALQKREP	11	Unmodified	_TKPIALQKREP_					0	0	0			REV__nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	REV__nc|ENSG00000169129|Q8N4X5-2|AFAP1L2	MULTI-MSMS	OvCa9_classI_Rep2	2	640.889892578125	2	640.887887	1279.76122	-0.17045	-0.00010924	3.4317	0.0021993	3.2613	0.0020901	640.8899760073222	130.96	1.1409	130.73	130.4	131.54	-0.22697					67	22	4	0	0	0	0.70761	1	12931	12931		27.047	1.4733	1	368320	+		57006	21434	47040	47082	62374	62374					0.13253012276913978
TKPINSKKRR	10	Unmodified	_TKPINSKKRR_					0	0	0			REV__ENST00000229214.8_1_12:75893569-75893638:-|nuORF	REV__ENST00000229214.8_1_12:75893569-75893638:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	614.8845825195312	2	614.385845	1226.75714	-4.8757	-0.0029956	3.7065	0.0022772	-1.1692	-0.00071831	614.3879084256669	157.16	1.131	155.99	155.65	156.79	-1.1707					59	27	4	0	0	0	0.7759	1	13598	13598		21.96	2.8564	1	104880	+		57007	23781	47041	47083	62375	62375					0.15282967573875794
TKPLPLSIL	9	Unmodified	_TKPLPLSIL_					0	0	0		USP29|p.Q470L|1|0.04|ENSG00000131864|chr19:57130084-57130084|A/T|missense_variant	USP29|p.Q470L|1|0.04|ENSG00000131864|chr19:57130084-57130084|A/T|missense_variant	USP29|p.Q470L|1|0.04|ENSG00000131864|chr19:57130084-57130084|A/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.24981689453125	2	491.320786	980.627018	0.027599	1.356E-05	-3.0796	-0.0015131	-3.052	-0.0014995	491.3191338566146	57.713	1.2126	57.713	57.522	58.734	0					64	28	3	0	0	0	0.027462	1	4885	4885		26.693	0	1	1637400			57008	36295	47042	47084	62376	62376					0.13592978522194699
TKPPNHRPA	9	Unmodified	_TKPPNHRPA_					0	0	0		ENSG00000186472|ENST00000333891|PCLO	ENSG00000186472|ENST00000333891|PCLO	ENSG00000186472|ENST00000333891|PCLO	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.3106384277344	2	509.283057	1016.55156	1.5114	0.00076975	2.757	0.0014041	4.2685	0.0021739	509.28401220284087	119.72	0.21591	119.72	119.62	119.83	0					6	4	2	0	0	0	0.027462	1	13737	13737		21.96	0	1	104210			57009	8338	47043	47085	62377	62377					0.043948141144596775
TKPRQKRGY	9	Unmodified	_TKPRQKRGY_					0	0	0			REV__nc|ENSG00000243943|Q96ME7-2|ZNF512	REV__nc|ENSG00000243943|Q96ME7-2|ZNF512	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.329833984375	2	567.330539	1132.64652	-0.48412	-0.00027465	-0.73588	-0.00041748	-1.22	-0.00069214	567.3299446868054	145.54	4.8872	144.11	142.68	147.57	-1.4357					247	95	4	0	0	0	0.67509	1	14277	14277		23.042	0.46283	1	208760	+		57010	23471	47044	47086	62378	62378					0.0855074758567298
TKPVGKLVGH	10	Unmodified	_TKPVGKLVGH_					0	0	0		nc|ENSG00000162843|B1ANS9-2|WDR64;nc|ENSG00000162843|B1ANS9|WDR64;ENSG00000162843|ENST00000437684|WDR64	nc|ENSG00000162843|B1ANS9-2|WDR64	nc|ENSG00000162843|B1ANS9-2|WDR64	MULTI-MSMS	OvCa9_classI_Rep2	2	518.3178100585938	2	518.319109	1034.62366	-0.27738	-0.00014377	-3.6187	-0.0018756	-3.8961	-0.0020194	518.317119052338	137.12	1.3347	136.9	136.16	137.49	-0.22697					65	27	3	0	0	0	0.75313	1	13640	13640		24.519	1.4767	1	143020			57011	6239	47045	47087	62379	62379					0.10773728468188892
TKPVLVLAEH	10	Unmodified	_TKPVLVLAEH_					0	0	0		ENST00000589389.5_1_16:4853547-4853640:-|nuORF	ENST00000589389.5_1_16:4853547-4853640:-|nuORF	ENST00000589389.5_1_16:4853547-4853640:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8302001953125	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.64697	1	12025	12025		36.447	10.873	1	308210			57012	14088	47046	47088	62380	62380					0.10094577919790026
TKQAYKVI	8	Unmodified	_TKQAYKVI_					0	0	0			REV__tr|A0A553SUR3|A0A553SUR3_NIACITransketolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_06015PE=4SV=1	REV__tr|A0A553SUR3|A0A553SUR3_NIACITransketolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_06015PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.78765869140625	2	475.78711	949.559667	1.3095	0.00062303	-1.3805	-0.00065681	-0.070994	-3.3778E-05	475.78620886305947	140.59	1.0255	139.1	138.76	139.78	-1.4952					37	19	3	0	0	0	0.74992	1	13735	13735		26.693	1.2427	1	84644	+		57013	31113	47047	47089	62381	62381					0.08286948311229025
TKQDALGPA	9	Unmodified	_TKQDALGPA_					0	0	0			REV__nc|ENSG00000116127|Q8TCU4-2|ALMS1	REV__nc|ENSG00000116127|Q8TCU4-2|ALMS1	MULTI-SECPEP	OvCa9_classI_Rep2	2	450.7972717285156	2	450.742899	899.471246	2.2499	0.0010141	-2.1757	-0.00098069	0.074219	3.3454E-05	450.74174979300915	45.581	0.70254	42.872	42.647	43.349	-2.7097					21	13	2	0	0	0	0.027462	1	2663	2663		14.865	0	1	36827	+		57014	18284	47048	47090	62382	62382					0.01748908000740812
TKQPIKLI	8	Unmodified	_TKQPIKLI_					0	0	0			REV__L1MB3_dup1513|chr1:246270299-246273131:-|1.1805691521590191|0.3959605958472513|1.58|429.0|13|1|sense	REV__L1MB3_dup1513|chr1:246270299-246273131:-|1.1805691521590191|0.3959605958472513|1.58|429.0|13|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.21087646484375	2	470.813128	939.611703	0.95613	0.00045016	-1.5928	-0.00074993	-0.6367	-0.00029977	470.8122719485684	112.99	0.6925	111.55	111.26	111.95	-1.4461					24	13	2	0	0	0	0.028476	1	10440	10440		31.955	0	1	48910	+		57015	28411	47049	47091	62383	62383					0.13948111724982937
TKRCSFQASST	11	Unmodified	_TKRCSFQASST_					0	0	0		ENST00000261839.11_1_15:52548900-52553134:-|nuORF	ENST00000261839.11_1_15:52548900-52553134:-|nuORF	ENST00000261839.11_1_15:52548900-52553134:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	608.2966918945312	2	608.292962	1214.57137	3.6539	0.0022227	2.5019	0.0015219	6.1558	0.0037445	608.2942855637167	59.026	3.3501	55.911	55.036	58.386	-3.1147					203	93	3	0	0	0	0.61983	1	1919	1919		42.864	0.46813	1	283460			57016	9874	47050	47092	62384	62384					-0.027332227277383936
TKRESILIVQ	10	Unmodified	_TKRESILIVQ_					0	0	0			REV__ENST00000380909.8_2_22:50637297-50637582:+|nuORF	REV__ENST00000380909.8_2_22:50637297-50637582:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	594.829833984375	2	593.861338	1185.70812	0.049536	2.9418E-05	-0.48094	-0.00028561	-0.4314	-0.00025619	593.8610545210398	77.377	0.72666	74.56	74.244	74.97	-2.8165					20	14	2	0	0	0	0.026694	1	6231	6231		38.754	0	1	49027	+		57017	25188	47051	47093	62385	62385					0.122696344942824
TKREWGLETE	10	Unmodified	_TKREWGLETE_					0	0	0			REV__tr|A0A7D6VQ49|A0A7D6VQ49_9CLOTGDP-mannose4,6-dehydrataseOS=ClostridiumintestinaleOX=36845GN=gmdPE=3SV=1	REV__tr|A0A7D6VQ49|A0A7D6VQ49_9CLOTGDP-mannose4,6-dehydrataseOS=ClostridiumintestinaleOX=36845GN=gmdPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	416.9036865234375	3	416.878815	1247.61462	0.092598	3.8602E-05	0.20296	8.4609E-05	0.29556	0.00012321	416.87883691278216	36.079	0.27348	36.079	35.846	36.119	0					9	5	2	0	0	0	0.027062	1	1876	1876		14.694	0	1	77252	+		57018	31291	47052	47094	62386	62386					0.0007129032117063616
TKRFGELKK	9	Unmodified	_TKRFGELKK_					0	0	0		tr|A0A553SLU9|A0A553SLU9_NIACITranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21370PE=4SV=1	tr|A0A553SLU9|A0A553SLU9_NIACITranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21370PE=4SV=1	tr|A0A553SLU9|A0A553SLU9_NIACITranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21370PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	553.83837890625	2	553.837665	1105.66078	-0.16387	-9.0759E-05	0.099088	5.4878E-05	-0.064786	-3.5881E-05	553.8374433244098	33.154	0.99523	30.444	30.222	31.218	-2.7097					38	19	3	0	0	0	0.53483	1	1159	1159		39.253	0	1	122440			57019	33767	47053	47095	62387	62387					0.11217400013947554
TKRGVATTEEF	11	Unmodified	_TKRGVATTEEF_					0	0	0			REV__ENST00000435729.1_1_2:152042805-152043093:+|nuORF	REV__ENST00000435729.1_1_2:152042805-152043093:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.24102783203125	3	413.550698	1237.63027	-0.62298	-0.00025763	-0.51364	-0.00021242	-1.1366	-0.00047005	413.5504223713563	48.565	1.9093	45.458	44.787	46.697	-3.1077					81	36	4	0	0	0	0.025701	1	2783	2783		20.315	0	1	154350	+		57020	25773	47054	47096	62388	62388					0.020955768382236784
TKRGVGPL	8	Unmodified	_TKRGVGPL_					0	0	0			REV__tr|A0A553SL95|A0A553SL95_NIACIEndonucleaseIIIOS=NialliacirculansOX=1397GN=nthPE=3SV=1	REV__tr|A0A553SL95|A0A553SL95_NIACIEndonucleaseIIIOS=NialliacirculansOX=1397GN=nthPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	413.5549011230469	2	414.25852	826.502486	3.0735	0.0012732	-1.5909	-0.00065906	1.4826	0.00061418	414.257802205537	76.218	0.20866	76.218	76.115	76.324	0					6	4	2	0	0	0	0.028476	1	7638	7638		42.474	17.97	1	100710	+		57021	30203	47055	47097	62389	62389					0.08229525825504425
TKRKHDNEG	9	Unmodified	_TKRKHDNEG_					0	0	0		nc|ENSG00000196419|P12956-2|XRCC6;ENSG00000196419|ENST00000360079|XRCC6	nc|ENSG00000196419|P12956-2|XRCC6	nc|ENSG00000196419|P12956-2|XRCC6	MULTI-MSMS	OvCa99_classI_Rep5	1	542.7813110351562	2	542.778336	1083.54212	1.18	0.00064045	0.65662	0.0003564	1.8366	0.00099685	542.7787511354508	145.25	0.93912	145.25	144.89	145.83	0					42	19	3	0	0	0	0.53483	1	17009	17009		39.253	0	1	140690			57022	8606	47056	47098	62390	62390					0.003690010382570108
TKRKLYVV	8	Unmodified	_TKRKLYVV_					0	0	0			REV__ENSG00000148848|ENST00000448723|ADAM12	REV__ENSG00000148848|ENST00000448723|ADAM12	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.2582702636719	2	503.824027	1005.6335	-1.1535	-0.00058118	1.2576	0.00063359	0.10402	5.2408E-05	503.8245370936106	69.918	0.57497	69.918	69.672	70.246	0					30	13	3	0	0	0	0.028476	1	6648	6648		12.959	0	1	454890	+		57023	20134	47057	47099	62391	62391					0.13090916473561265
TKRKNGLS	8	Unmodified	_TKRKNGLS_					0	0	0			REV__ENST00000218089.13_1_X:123094664-123155260:+|nuORF	REV__ENST00000218089.13_1_X:123094664-123155260:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	452.26171875	2	452.272158	902.529764	0.79834	0.00036107	4.284	0.0019376	5.0824	0.0022986	452.2739907078894	66.761	0.35805	66.761	66.619	66.977	0					12	8	2	0	0	0	0.028476	1	6222	6222		23.042	0	1	208900	+		57024	23731	47058	47100	62392	62392					0.07460009365900078
TKRLLEKL	8	Unmodified	_TKRLLEKL_					0	0	0			REV__tr|A0A7D6VN13|A0A7D6VN13_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_15725PE=4SV=1	REV__tr|A0A7D6VN13|A0A7D6VN13_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_15725PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	500.8280944824219	2	500.829309	999.644065	-0.88449	-0.00044298	0.10407	5.212E-05	-0.78042	-0.00039086	500.8292980614921	73.918	1.8817	71.946	71.587	73.469	-1.9711					81	35	4	0	0	0	0.60331	1	6054	6054		63.306	3.188	1	955280	+		57025	31154	47059	47101	62393	62393					0.1442289912798742
TKRLRMLFNWR	11	Unmodified	_TKRLRMLFNWR_					0	0	0			REV__ENST00000546500.5_1_12:54674031-54674238:+|nuORF	REV__ENST00000546500.5_1_12:54674031-54674238:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.302978515625	3	507.625879	1519.85581	-1.0029	-0.00050908	-2.5096	-0.001274	-3.5125	-0.001783	507.62456473380576	90.089	1.279	88.008	87.644	88.923	-2.0805					46	24	2	0	0	0	0.026101	1	5670	5670		21.032	0	1	80107	+		57026	27421	47060	47102	62394	62394					0.11667247547279658
TKRLRMLFNWR	11	Unmodified	_TKRLRMLFNWR_					0	0	0			REV__ENST00000546500.5_1_12:54674031-54674238:+|nuORF	REV__ENST00000546500.5_1_12:54674031-54674238:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.30328369140625	3	507.625879	1519.85581	-0.27448	-0.00013933	-3.3465	-0.0016988	-3.621	-0.0018381	507.62406273346755	90.583	1.2791	88.007	87.6	88.879	-2.575					41	24	2	0	0	0	0.026283	1	7902	7902		10.562	0	1	60040	+		57027	27421	47060	47102	62395	62395					0.11667247547279658
TKRSPFQGK	9	Unmodified	_TKRSPFQGK_					0	0	0		ENST00000335793.3_1_17:71280888-71281083:-|nuORF	ENST00000335793.3_1_17:71280888-71281083:-|nuORF	ENST00000335793.3_1_17:71280888-71281083:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	524.7985229492188	2	524.79854	1047.58253	0.25296	0.00013275	-0.57516	-0.00030184	-0.3222	-0.00016909	524.7981408684497	40.677	1.8723	37.968	37.551	39.423	-2.7097					98	37	4	0	0	0	0.35444	1	2068	2068		56.721	0	1	622190			57028	10503	47061	47103	62396	62396					0.06063967428713113
TKRTSTPKPHL	11	Unmodified	_TKRTSTPKPHL_					0	0	0		L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|128|3|sense;L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|76|2|sense	L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|128|3|sense	L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|128|3|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.369873046875	2	633.369861	1264.72517	-3.7067	-0.0023477	2.7994	0.0017731	-0.90726	-0.00057463	633.3714685413702	153.42	3.7144	151.96	150.68	154.4	-1.4516					273	94	4	0	0	0	0.72064	1	15142	15142		22.58	4.3176	1	395790			57029	14726	47062	47104	62397	62397					0.10339555100085818
TKRVVRSA	8	Unmodified	_TKRVVRSA_					0	0	0		nc|ENSG00000184110|Q99613-2|EIF3C;ENSG00000184110|ENST00000331666|EIF3C;ENSG00000205609|ENST00000380876|EIF3CL	nc|ENSG00000184110|Q99613-2|EIF3C	nc|ENSG00000184110|Q99613-2|EIF3C	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.787353515625	2	458.787976	915.561398	-2.1404	-0.00098197	1.985	0.00091071	-0.15532	-7.1258E-05	458.78877967166295	148.29	2.0994	146.85	146.22	148.32	-1.435					112	42	4	0	0	0	0.74754	1	14655	14655		27.882	2.4321	1	1351300			57030	8130	47063	47105	62398	62398					0.10024002119848774
TKRYRNLLD	9	Unmodified	_TKRYRNLLD_					0	0	0			REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|62|1|sense	REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|62|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.8167114257812	2	589.835654	1177.65676	0.05797	3.4193E-05	2.7798	0.0016396	2.8377	0.0016738	589.8381752133672	70.934	0.5484	70.934	70.681	71.23	0					15	13	2	0	0	0	0.027462	1	6820	6820		20.947	0	1	446490	+		57031	28506	47064	47106	62399	62399					0.0750331052022375
TKSCATLSL	9	Unmodified	_TKSCATLSL_					0	0	0			REV__tr|A0A7D6VV95|A0A7D6VV95_9CLOTABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23550PE=3SV=1	REV__tr|A0A7D6VV95|A0A7D6VV95_9CLOTABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23550PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	461.760009765625	2	462.24696	922.479368	-0.443	-0.00020478	-3.5221	-0.0016281	-3.9652	-0.0018329	462.2450744269883	54.871	0.80863	54.871	54.464	55.273	0					36	18	5	0	0	0	0.027459	1	4475	4475		36.447	17.343	1	2105000	+		57032	31710	47065	47107	62400	62400					0.015027189258717044
TKSFSKVPE	9	Unmodified	_TKSFSKVPE_					0	0	0			REV__ENSG00000118197|ENST00000331314|DDX59	REV__ENSG00000118197|ENST00000331314|DDX59	MULTI-SECPEP	OvCa9_classI_Rep2	2	511.84417724609375	2	511.779482	1021.54441	-0.39833	-0.00020386	0.28025	0.00014343	-0.11808	-6.043E-05	511.7795316858515	83.53	0.78333	81.931	81.594	82.378	-1.5989					21	15	2	0	0	0	0.027461	1	7212	7212		25.574	0	1	16900	+		57033	18383	47066	47108	62401	62401					0.034500367233818
TKSGKFMNPTD	11	Unmodified	_TKSGKFMNPTD_					0	0	0		ENST00000544764.5_1_12:14952512-14954317:-|nuORF;ENSG00000084463|ENST00000261167|WBP11	ENST00000544764.5_1_12:14952512-14954317:-|nuORF	ENST00000544764.5_1_12:14952512-14954317:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	614.297119140625	2	613.297713	1224.58087	1.3517	0.00082897	0.89488	0.00054883	2.2466	0.0013778	613.799749004116	138.74	0.47859	138.74	138.55	139.03	0					14	9	2	0	0	0	0.025759	1	16216	16216		11.097	0	1	25822			57034	1715	47067	47109	62402	62402					-0.022434544422367253
TKSHFQLD	8	Unmodified	_TKSHFQLD_					0	0	0		nc|ENSG00000197362|Q8N393-2|ZNF786;ENSG00000197362|ENST00000491431|ZNF786	nc|ENSG00000197362|Q8N393-2|ZNF786	nc|ENSG00000197362|Q8N393-2|ZNF786	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.2516784667969	2	488.248349	974.482145	-0.059388	-2.8996E-05	0.65643	0.0003205	0.59705	0.00029151	488.2479813555544	31.54	0.64215	31.54	31.264	31.906	0					19	12	3	0	0	0	0.028476	1	1332	1332		20.947	3.582	1	65904			57035	8705	47068	47110	62403	62403					-0.0061168962496367385
TKSIRKDKL	9	Unmodified	_TKSIRKDKL_					0	0	0			REV__ENSG00000163535|ENST00000357799|SGO2	REV__ENSG00000163535|ENST00000357799|SGO2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.8199462890625	2	544.842948	1087.67134	-0.65173	-0.00035509	2.1029	0.0011458	1.4512	0.00079069	544.8440759392283	116.78	0.73557	115.41	115.19	115.93	-1.3645					24	13	3	0	0	0	0.027462	1	10964	10964		19.104	0	1	36867	+		57036	20849	47069	47111	62404	62404					0.13101382668355654
TKSIRKDKL	9	Unmodified	_TKSIRKDKL_					0	0	0			REV__ENSG00000163535|ENST00000357799|SGO2	REV__ENSG00000163535|ENST00000357799|SGO2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	544.842948	1087.67134	-0.83113	-0.00045284	3.1676	0.0017258	2.3365	0.001273	544.8445043567875	115.6	0.49345	115.48	115.19	115.69	-0.11777	-0.021785	3.1898E-05	NaN	13.454	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25705	+		57037	20849	47069	47111							0.13101382668355654
TKSIRKDKL	9	Unmodified	_TKSIRKDKL_					0	0	0			REV__ENSG00000163535|ENST00000357799|SGO2	REV__ENSG00000163535|ENST00000357799|SGO2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	544.842948	1087.67134	-0.78712	-0.00042886	2.4854	0.0013542	1.6983	0.00092531	544.8440538993086	116.6	0.59371	115.56	115.24	115.84	-1.0414	0.059162	-0.00071146	NaN	13.454	20	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39415	+		57038	20849	47069	47111							0.13101382668355654
TKSISVIFL	9	Unmodified	_TKSISVIFL_					0	0	0			REV__NF1|p.M1949Ifs*2|1|0.67|ENSG00000196712|chr17:31334870-31334888|ATGACTCCATGGCTGTCAA/-|frameshift_variant	REV__NF1|p.M1949Ifs*2|1|0.67|ENSG00000196712|chr17:31334870-31334888|ATGACTCCATGGCTGTCAA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	504.30975341796875	2	504.310418	1006.60628	0.84701	0.00042715	-1.3908	-0.00070138	-0.54377	-0.00027423	504.3095626298887	121.76	1.205	120.73	120.43	121.64	-1.0286					54	22	3	0	0	0	0.33652	1	9337	9337		58.782	16.386	1	146370	+		57039	22859	47070	47112	62405	62405					0.10324388142510088
TKSISVIFL	9	Unmodified	_TKSISVIFL_					0	0	0			REV__NF1|p.M1949Ifs*2|1|0.67|ENSG00000196712|chr17:31334870-31334888|ATGACTCCATGGCTGTCAA/-|frameshift_variant	REV__NF1|p.M1949Ifs*2|1|0.67|ENSG00000196712|chr17:31334870-31334888|ATGACTCCATGGCTGTCAA/-|frameshift_variant	MULTI-MATCH	OvCa99_classI_Rep5	1		2	504.310418	1006.60628	2.2939	0.0011568	-0.25015	-0.00012616	2.0438	0.0010307	504.31021231756705	120.84	0.4064	120.84	120.65	121.06	0	0.094134	2.3124E-06	NaN	58.782	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	139760	+		57040	22859	47070	47112							0.10324388142510088
TKSISVIFL	9	Unmodified	_TKSISVIFL_					0	0	0			REV__NF1|p.M1949Ifs*2|1|0.67|ENSG00000196712|chr17:31334870-31334888|ATGACTCCATGGCTGTCAA/-|frameshift_variant	REV__NF1|p.M1949Ifs*2|1|0.67|ENSG00000196712|chr17:31334870-31334888|ATGACTCCATGGCTGTCAA/-|frameshift_variant	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	504.310418	1006.60628	-1.4726	-0.00074263	1.2133	0.00061188	-0.25925	-0.00013074	504.31092076174866	120.79	0.93773	120.59	120.26	121.2	-0.19718	-0.15596	0.0014784	NaN	58.782	47	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86974	+		57041	22859	47070	47112							0.10324388142510088
TKSKVNKR	8	Unmodified	_TKSKVNKR_					0	0	0		tr|A0A7D6VNN1|A0A7D6VNN1_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=HZF06_18565PE=4SV=1	tr|A0A7D6VNN1|A0A7D6VNN1_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=HZF06_18565PE=4SV=1	tr|A0A7D6VNN1|A0A7D6VNN1_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=HZF06_18565PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.8006896972656	2	480.801083	959.587613	-3.2353	-0.0015556	3.0585	0.0014705	-0.1769	-8.5052E-05	480.80242897085384	151.49	1.9682	150.06	149.63	151.6	-1.4344					128	43	5	0	0	0	0.75723	1	15004	15004		23.042	1.0826	1	1260100			57042	34718	47071	47113	62406	62406					0.10620271291327299
TKSLPNSQV	9	Unmodified	_TKSLPNSQV_					0	0	0			REV__ENST00000425368.6_1_6:31914375-31914859:+|nuORF	REV__ENST00000425368.6_1_6:31914375-31914859:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.3050842285156	2	487.269281	972.52401	0.67416	0.0003285	-1.1029	-0.00053742	-0.42877	-0.00020893	487.2687145278286	125.01	0.93906	124.77	124.52	125.45	-0.2359					29	18	2	0	0	0	0.027433	1	12147	12147		54.776	7.119	1	55245	+		57043	25652	47072	47114	62407	62407					0.03664866063570571
TKSLVREVL	9	Unmodified	_TKSLVREVL_					0	0	0			REV__ENST00000238497.9_1_18:61078794-61089685:-|nuORF	REV__ENST00000238497.9_1_18:61078794-61089685:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	522.82421875	2	522.824224	1043.63389	-0.61715	-0.00032266	-0.12179	-6.3677E-05	-0.73894	-0.00038634	522.8241473129543	81.355	1.6752	79.033	78.337	80.012	-2.3226					150	32	6	0	0	0	0.35444	1	4525	4525		56.721	3.7844	1	2046900	+		57044	23815	47073	47115	62408	62408					0.1138229140274234
TKSRMLQP	8	Unmodified	_TKSRMLQP_					0	0	0		ENST00000575334.5_3_16:4466638-4470487:-|nuORF;ENST00000573165.1_2_16:4466638-4475523:-|nuORF	ENST00000575334.5_3_16:4466638-4470487:-|nuORF	ENST00000575334.5_3_16:4466638-4470487:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.80010986328125	2	480.768394	959.522236	-0.3323	-0.00015976	0.10677	5.1331E-05	-0.22553	-0.00010843	480.768504067736	39.183	0.40064	39.183	39.063	39.463	0					12	8	2	0	0	0	0.028476	1	2320	2320		60.972	0	1	70607			57045	13916	47074	47116	62409	62409					0.04085533773968564
TKSRMLQP	8	Unmodified	_TKSRMLQP_					0	0	0		ENST00000575334.5_3_16:4466638-4470487:-|nuORF;ENST00000573165.1_2_16:4466638-4475523:-|nuORF	ENST00000575334.5_3_16:4466638-4470487:-|nuORF	ENST00000575334.5_3_16:4466638-4470487:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	480.768394	959.522236	0.78832	0.000379	-0.72491	-0.00034851	0.063406	3.0483E-05	480.76797659874535	42.059	0.39449	39.349	39.078	39.473	-2.7097	0.059832	-0.00085796	NaN	60.972	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20964			57046	13916	47074	47116							0.04085533773968564
TKSRMLQP	8	Unmodified	_TKSRMLQP_					0	0	0		ENST00000575334.5_3_16:4466638-4470487:-|nuORF;ENST00000573165.1_2_16:4466638-4475523:-|nuORF	ENST00000575334.5_3_16:4466638-4470487:-|nuORF	ENST00000575334.5_3_16:4466638-4470487:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	480.768394	959.522236	-0.99312	-0.00047746	1.0731	0.00051592	0.080004	3.8463E-05	480.7687907963246	42.316	0.81658	39.336	39.116	39.933	-2.9804	0.046593	0.00087091	NaN	60.972	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63457			57047	13916	47074	47116							0.04085533773968564
TKSRPFGPLG	10	Unmodified	_TKSRPFGPLG_					0	0	0			REV__ENST00000262376.10_1_16:4931488-4931788:+|nuORF	REV__ENST00000262376.10_1_16:4931488-4931788:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	530.2997436523438	2	530.300916	1058.58728	0.75519	0.00040048	-4.442	-0.0023556	-3.6868	-0.0019551	530.2984868490693	29.055	0.60114	26.345	26.18	26.781	-2.7097					26	12	3	0	0	0	0.79213	1	671	671		19.997	0.6368	1	41057	+		57048	23974	47075	47117	62410	62410					0.0603285157146729
TKSRRMTNN	9	Unmodified	_TKSRRMTNN_					0	0	0		ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.3153076171875	2	554.288014	1106.56147	0.85358	0.00047313	-1.8592	-0.0010305	-1.0056	-0.00055739	554.2873328227654	111.09	0.73665	109.49	109.23	109.96	-1.6011					29	13	3	0	0	0	0.027453	1	10259	10259		37.812	19.549	1	45937			57049	3295	47076	47118	62411	62411					0.012456340575454306
TKSRRMTNN	9	Unmodified	_TKSRRMTNN_					0	0	0		ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	554.288014	1106.56147	0.80639	0.00044697	-1.7348	-0.0009616	-0.92845	-0.00051463	554.2872375975271	109.71	0.54529	109.54	109.26	109.81	-0.17237	0.051466	-0.00040928	NaN	37.812	22	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47616			57050	3295	47076	47118							0.012456340575454306
TKSRRMTNN	9	Unmodified	_TKSRRMTNN_					0	0	0		ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	ENSG00000118217|ENST00000367942|ATF6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	554.288014	1106.56147	0.10069	5.5812E-05	-0.8568	-0.00047492	-0.75611	-0.0004191	554.2876038909651	110.57	0.67751	109.43	109.14	109.81	-1.1444	-0.059488	0.00056409	NaN	37.812	23	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47554			57051	3295	47076	47118							0.012456340575454306
TKSSVTLQP	9	Unmodified	_TKSSVTLQP_					0	0	0		ENST00000396403.8_1_19:53995875-53996058:+|nuORF	ENST00000396403.8_1_19:53995875-53996058:+|nuORF	ENST00000396403.8_1_19:53995875-53996058:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.8002624511719	2	480.771657	959.528761	-0.63249	-0.00030409	0.22916	0.00011017	-0.40334	-0.00019391	480.7716051622404	39.948	0.39711	39.948	39.756	40.154	0					13	8	2	0	0	0	0.027017	1	2381	2381		82.241	15.811	1	176340			57052	11315	47077	47119	62412	62412					0.04737750206345481
TKSSWKRL	8	Unmodified	_TKSSWKRL_					0	0	0			REV__ENSG00000196208|ENST00000381486|GREB1	REV__ENSG00000196208|ENST00000381486|GREB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.2582702636719	2	503.295633	1004.57671	-0.40812	-0.00020541	0.71022	0.00035745	0.3021	0.00015205	503.2955510817133	69.475	0.36622	69.475	69.39	69.756	0					12	8	2	0	0	0	0.028476	1	6648	6648		25.574	6.2141	1	85229	+		57053	22799	47078	47120	62413	62413					0.07460868917041807
TKSSWKRL	8	Unmodified	_TKSSWKRL_					0	0	0			REV__ENSG00000196208|ENST00000381486|GREB1	REV__ENSG00000196208|ENST00000381486|GREB1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	503.295633	1004.57671	-1.811	-0.00091145	2.6226	0.0013199	0.81161	0.00040848	503.2961554594589	72.854	0.24165	69.458	69.253	69.495	-3.3961	-0.0083362	0.0010889	NaN	37.812	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12376	+		57054	22799	47078	47120							0.07460868917041807
TKSTKAKLN	9	Unmodified	_TKSTKAKLN_					0	0	0			REV__ENST00000472109.1_1_17:42797605-42797962:-|nuORF	REV__ENST00000472109.1_1_17:42797605-42797962:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.3243103027344	2	495.800749	989.586944	-1.2985	-0.00064382	3.4152	0.0016932	2.1166	0.0010494	495.80249643748965	103.69	0.55196	103.69	103.47	104.02	0					22	12	3	0	0	0	0.027462	1	11617	11617		26.693	0	1	157080	+		57055	26304	47079	47121	62414	62414					0.0917343185159325
TKTAILGF	8	Unmodified	_TKTAILGF_					0	0	0		tr|A0A7D6ZEV9|A0A7D6ZEV9_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12475PE=4SV=1	tr|A0A7D6ZEV9|A0A7D6ZEV9_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12475PE=4SV=1	tr|A0A7D6ZEV9|A0A7D6ZEV9_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12475PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	425.7755126953125	2	425.755278	849.496004	-0.99637	-0.00042421	-4.062	-0.0017294	-5.0584	-0.0021536	425.75264301284517	68.794	0.2487	66.174	66.018	66.266	-2.6203					7	4	2	0	0	0	0.028476	1	5433	5433		24.203	2.2429	1	6134.2			57056	35490	47080	47122	62415	62415					0.06523587874153236
TKTNKSTSI	9	Unmodified	_TKTNKSTSI_					0	0	0			REV__ENST00000480999.1_1_6:30152426-30152909:-|nuORF	REV__ENST00000480999.1_1_6:30152426-30152909:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.7566223144531	2	490.274564	978.534574	-0.70375	-0.00034503	2.9328	0.0014379	2.229	0.0010928	490.2751272154783	71.517	0.24962	68.06	67.924	68.174	-3.4563					5	4	2	0	0	0	0.027462	1	5441	5441		26.693	4.733	1	7104.2	+		57057	26472	47081	47123	62416	62416					0.04444848718014782
TKTNKSTSI	9	Unmodified	_TKTNKSTSI_					0	0	0			REV__ENST00000480999.1_1_6:30152426-30152909:-|nuORF	REV__ENST00000480999.1_1_6:30152426-30152909:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	490.274564	978.534574	-0.71519	-0.00035064	4.7051	0.0023068	3.9899	0.0019562	490.27673606761067	68.383	0.52818	68.383	68.077	68.606	0	0.16114	0.00020884	NaN	26.693	21	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	322690	+		57058	26472	47081	47123							0.04444848718014782
TKVADPGPA	9	Unmodified	_TKVADPGPA_					0	0	0		nc|ENSG00000124782|Q92766|RREB1;ENSG00000124782|ENST00000379938|RREB1;nc|ENSG00000124782|Q92766-5|RREB1;nc|ENSG00000124782|Q92766-3|RREB1	nc|ENSG00000124782|Q92766|RREB1	nc|ENSG00000124782|Q92766|RREB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	428.7618408203125	2	428.232168	854.449782	2.2646	0.00096977	0.33345	0.00014279	2.598	0.0011126	428.2327532720981	78.295	0.40363	78.295	78.053	78.457	0					15	9	3	0	0	0	0.027462	1	7954	7954		24.519	13.008	1	180650			57059	3678	47082	47124	62417	62417					0.01673522972032515
TKVAVKSL	8	Unmodified	_TKVAVKSL_					0	0	0		ENST00000469956.1_1_1:32741525-32742647:+|nuORF;nc|ENSG00000182866|P06239-2|LCK;ENST00000469765.5_1_1:32739930-32745396:+|nuORF;ENSG00000182866|ENST00000336890|LCK;nc|ENSG00000182866|P06239-3|LCK	ENST00000469956.1_1_1:32741525-32742647:+|nuORF	ENST00000469956.1_1_1:32741525-32742647:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	423.2747802734375	2	423.276378	844.538203	-1.5369	-0.00065052	-1.6206	-0.00068596	-3.1575	-0.0013365	423.27558847705467	140.82	1.576	139.79	139.38	140.96	-1.0339					74	31	4	0	0	0	0.75006	1	11647	11647		16.473	0	1	296010			57060	8030	47083	47125	62418	62418					0.10971563282521402
TKVEAVIHPQ	10	Unmodified	_TKVEAVIHPQ_					0	0	0		nc|ENSG00000188199|A6NNL0-2|NUTM2B;nc|ENSG00000184923|Q8IVF1-2|NUTM2A;ENSG00000214562|ENST00000381697|NUTM2D;ENSG00000228570|ENST00000429984|NUTM2E;ENSG00000188199|ENST00000429828|NUTM2B;ENSG00000184923|ENST00000381707|NUTM2A	nc|ENSG00000188199|A6NNL0-2|NUTM2B	nc|ENSG00000188199|A6NNL0-2|NUTM2B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	561.2803955078125	2	561.319306	1120.62406	0.15038	8.4414E-05	2.3492	0.0013187	2.4996	0.0014031	561.3204898570251	43.044	1.3523	40.036	39.539	40.891	-3.0074					52	25	3	0	0	0	0.026782	1	2135	2135		23.523	0.48021	1	147010			57061	8202	47084	47126	62419	62419					0.06857103397373976
TKVEAVIHPQ	10	Unmodified	_TKVEAVIHPQ_					0	0	0		nc|ENSG00000188199|A6NNL0-2|NUTM2B;nc|ENSG00000184923|Q8IVF1-2|NUTM2A;ENSG00000214562|ENST00000381697|NUTM2D;ENSG00000228570|ENST00000429984|NUTM2E;ENSG00000188199|ENST00000429828|NUTM2B;ENSG00000184923|ENST00000381707|NUTM2A	nc|ENSG00000188199|A6NNL0-2|NUTM2B	nc|ENSG00000188199|A6NNL0-2|NUTM2B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	561.319306	1120.62406	1.1994	0.00067323	1.4253	0.00080003	2.6246	0.0014733	561.3199844741707	42.786	1.0368	40.076	39.571	40.608	-2.7097	0.019832	-0.00066058	NaN	23.523	46	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57513			57062	8202	47084	47126							0.06857103397373976
TKVKEALLI	9	Unmodified	_TKVKEALLI_					0	0	0		nc|ENSG00000144674|Q13439-3|GOLGA4;nc|ENSG00000144674|Q13439-4|GOLGA4;ENSG00000144674|ENST00000361924|GOLGA4;nc|ENSG00000144674|Q13439-5|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.3009948730469	2	507.831517	1013.64848	1.2846	0.00065235	-1.6905	-0.00085849	-0.40592	-0.00020614	507.8305720664289	90.55	1.8003	89.248	88.879	90.68	-1.302					93	34	5	0	0	0	0.02744	1	7962	7962		44.377	14.059	1	463100			57063	5173	47085	47127	62420	62420					0.14220363550907678
TKVQDHSKA	9	Unmodified	_TKVQDHSKA_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.K1766Qfs*38|1|0.11|ENSG00000137497|chr11:72007356-72007357|-/G|frameshift_variant	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.80181884765625	2	507.272355	1012.53016	-1.2507	-0.00063445	-2.1264	-0.0010786	-3.3771	-0.0017131	507.7735712316553	54.456	0.71725	51.208	50.876	51.593	-3.2474					20	13	2	0	0	0	0.02741	1	3391	3391		60.972	0	1	24721			57064	4591	47086	47128	62421	62421					0.024393842950871658
TKVRSIIIE	9	Unmodified	_TKVRSIIIE_					0	0	0			REV__ENST00000514618.5_1_4:164533840-164534011:-|nuORF	REV__ENST00000514618.5_1_4:164533840-164534011:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8099365234375	2	529.832049	1057.64954	-0.13027	-6.9019E-05	1.3404	0.0007102	1.2102	0.00064119	529.8323524201193	105.11	0.13213	105.11	105	105.13	0					4	2	2	0	0	0	0.027462	1	11788	11788		23.042	0	1	38418	+		57065	26989	47087	47129	62422	62422					0.12302577919808755
TKVSPRSILHQ	11	Unmodified	_TKVSPRSILHQ_					0	0	0			REV__KIDINS220|p.H1622Qfs*20|1|0.07|ENSG00000134313|chr2:8731170-8731171|-/CACTTTGTTGGCAATTTTTAAAGCCC|frameshift_variant	REV__KIDINS220|p.H1622Qfs*20|1|0.07|ENSG00000134313|chr2:8731170-8731171|-/CACTTTGTTGGCAATTTTTAAAGCCC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3658447265625	2	633.369861	1264.72517	-3.894	-0.0024663	2.7981	0.0017723	-1.0959	-0.00069408	633.3715080583703	149.82	2.9263	149.6	148.42	151.35	-0.22696					170	58	4	0	0	0	0.72491	1	15244	15244		16.717	0	1	116220	+		57066	19193	47088	47130	62423	62423					0.10339555100085818
TKVSPRSILHQ	11	Unmodified	_TKVSPRSILHQ_					0	0	0			REV__KIDINS220|p.H1622Qfs*20|1|0.07|ENSG00000134313|chr2:8731170-8731171|-/CACTTTGTTGGCAATTTTTAAAGCCC|frameshift_variant	REV__KIDINS220|p.H1622Qfs*20|1|0.07|ENSG00000134313|chr2:8731170-8731171|-/CACTTTGTTGGCAATTTTTAAAGCCC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3687744140625	2	633.369861	1264.72517	-4.5141	-0.0028591	3.4388	0.002178	-1.0753	-0.00068108	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.7246	1	15430	15430		20.837	4.1198	1	369460	+		57067	19193	47088	47130	62424	62424					0.10339555100085818
TKVSSYPVALI	11	Unmodified	_TKVSSYPVALI_					0	0	0		nc|ENSG00000130024|Q8WUB8-3|PHF10;nc|ENSG00000130024|Q8WUB8-2|PHF10;ENSG00000130024|ENST00000339209|PHF10;ENST00000452540.1_1_X:154522213-154522408:+|nuORF;PHF10|p.C380Ffs*9|1|0.04|ENSG00000130024|chr6:169705701-169705702|-/GAAA|frameshift_variant	nc|ENSG00000130024|Q8WUB8-3|PHF10	nc|ENSG00000130024|Q8WUB8-3|PHF10	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3427734375	2	589.344989	1176.67542	-5.1334	-0.0030254	1.6192	0.00095427	-3.5142	-0.0020711	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.68021	1	12630	12630		36.447	4.9169	1	589610			57068	3952	47089	47131	62425	62425					0.09415427371436635
TKVVSFTE	8	Unmodified	_TKVVSFTE_					0	0	0		tr|A0A553SPK8|A0A553SPK8_NIACIPhosphate/phosphite/phosphonateABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_26610PE=3SV=1	tr|A0A553SPK8|A0A553SPK8_NIACIPhosphate/phosphite/phosphonateABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_26610PE=3SV=1	tr|A0A553SPK8|A0A553SPK8_NIACIPhosphate/phosphite/phosphonateABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_26610PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	455.7489929199219	2	455.74765	909.480748	2.1204	0.00096636	0.39915	0.00018191	2.5195	0.0011483	455.74760726647935	137.79	0.51965	137.79	137.54	138.06	0					19	11	2	0	0	0	0.68714	1	16086	16086		45.952	1.8352	1	105800			57069	34056	47090	47132	62426	62426					0.022386762862993237
TKVWVDKSF	9	Unmodified	_TKVWVDKSF_					0	0	0			REV__tr|A0A553SUB6|A0A553SUB6_NIACIDUF1349domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06690PE=4SV=1	REV__tr|A0A553SUB6|A0A553SUB6_NIACIDUF1349domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06690PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.82958984375	2	555.303124	1108.5917	0.0018429	1.0234E-06	3.6998	0.0020545	3.7016	0.0020555	555.3043065581162	60.489	0.24951	60.489	60.352	60.602	0					8	5	2	0	0	0	0.027462	1	5287	5287		31.53	2.3598	1	135220	+		57070	31060	47091	47133	62427	62427					0.04174315994373501
TKVYEAITK	9	Unmodified	_TKVYEAITK_					0	0	0		tr|A0A553SU67|A0A553SU67_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_06460PE=4SV=1	tr|A0A553SU67|A0A553SU67_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_06460PE=4SV=1	tr|A0A553SU67|A0A553SU67_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_06460PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.8543701171875	2	526.802957	1051.59136	0.22803	0.00012013	-0.88432	-0.00046586	-0.65629	-0.00034573	526.802552026141	128.36	1.6309	127.27	126.87	128.51	-1.0933					51	32	2	0	0	0	0.027462	1	10091	10091		29.15	0	1	27379			57071	34573	47092	47134	62428	62428					0.06762896274494778
TKWGVQHWIS	10	Unmodified	_TKWGVQHWIS_					0	0	0			REV__nc|ENSG00000136436|Q13137-3|CALCOCO2	REV__nc|ENSG00000136436|Q13137-3|CALCOCO2	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.5304260253906	3	414.552374	1240.63529	-0.012316	-5.1057E-06	-4.0107	-0.0016627	-4.0231	-0.0016678	414.8859815304786	37.508	0.23308	37.508	37.298	37.531	0					9	4	3	0	0	0	0.027138	1	2051	2051		12.957	0	1	22260	+		57072	28874	47093	47135	62429	62429					0.024599254915074198
TKWGVWGPF	9	Unmodified	_TKWGVWGPF_					0	0	0		ENST00000418310.5_1_7:73536047-73536155:+|nuORF	ENST00000418310.5_1_7:73536047-73536155:+|nuORF	ENST00000418310.5_1_7:73536047-73536155:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.7781982421875	2	539.279452	1076.54435	-0.9056	-0.00048837	0.059235	3.1944E-05	-0.84637	-0.00045643	539.2791240745973	63.8	1.3048	60.325	59.772	61.077	-3.475					82	26	5	0	0	0	0.027462	1	4510	4510		24.203	0	1	301040			57073	11636	47094	47136	62430	62430					0.009140815140426639
TKWKESSGLI	10	Unmodified	_TKWKESSGLI_					0	0	0			REV__ENST00000477646.1_1_2:179095155-179095200:+|nuORF	REV__ENST00000477646.1_1_2:179095155-179095200:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.2855834960938	2	574.819138	1147.62372	1.1308	0.00064999	-1.1846	-0.00068092	-0.053804	-3.0928E-05	575.3193294808549	146.79	0.58917	146.79	146.57	147.16	0					15	11	2	0	0	0	0.026674	1	17187	17187		56.434	3.4971	1	57132	+		57074	26391	47095	47137	62431	62431					0.055816836775193224
TKYPRKAARM	10	Unmodified	_TKYPRKAARM_					0	0	0			REV__ENSG00000174282|ENST00000380599|ZBTB4	REV__ENSG00000174282|ENST00000380599|ZBTB4	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3497924804688	2	611.347874	1220.6812	2.8968	0.0017709	2.2523	0.0013769	5.1491	0.0031479	611.3491630908582	125.96	1.25	124.91	124.58	125.83	-1.0525					67	23	4	0	0	0	0.55109	1	9827	9827		47.96	0.30219	1	429160	+		57075	21823	47096	47138	62432	62432					0.07968247402072848
TLAAFVPLLL	10	Unmodified	_TLAAFVPLLL_					0	0	0		ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	ENSG00000010292|ENST00000315579|NCAPD2	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.3351440429688	2	529.336436	1056.65832	-1.0627	-0.00056254	-3.1077	-0.001645	-4.1704	-0.0022076	529.3346373685346	123.64	1.5102	122.27	121.95	123.46	-1.3666					51	29	4	0	0	0	0.43592	1	11731	11731		63.306	5.495	1	128680			57076	941	47097	47139	62433	62433					0.13225551556297432
TLAALHLNVL	10	Unmodified	_TLAALHLNVL_					0	0	0			REV__ENSG00000122547|ENST00000242108|EEPD1	REV__ENSG00000122547|ENST00000242108|EEPD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.7911987304688	2	532.826766	1063.63898	-1.7383	-0.0009262	1.1707	0.00062378	-0.56757	-0.00030242	532.8272651303017	106.26	0.98244	104.25	104.1	105.09	-2.0161					23	18	2	0	0	0	0.026665	1	9677	9677		42.396	10.441	1	34709	+		57077	15637	47098	47140	62434	62434					0.10970595265393968
TLAAVIGNLIA	11	Unmodified	_TLAAVIGNLIA_					0	0	0			REV__ENSG00000177917|ENST00000326446|ARL6IP6	REV__ENSG00000177917|ENST00000326446|ARL6IP6	MULTI-MSMS	OvCa9_classI_Rep3	3	528.3291625976562	2	528.326599	1054.63865	0.33475	0.00017686	3.4023	0.0017975	3.7371	0.0019744	528.3282724916941	128.79	3.3005	127.69	127.27	130.57	-1.0933					188	66	4	0	0	0	0.7246	1	10320	10320		20.837	1.4772	1	235110	+		57078	22032	47099	47141	62435	62435					0.11351175545541992
TLAAVLQRI	9	Unmodified	_TLAAVLQRI_					0	0	0		ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	OvCa99_classI_Rep5	1	492.8148193359375	2	492.813659	983.612765	1.1488	0.00056616	0.7891	0.00038888	1.9379	0.00095504	492.813945787352	109.42	2.135	109.42	109.06	111.2	0					79	47	2	0	0	0	0.0093154	3	12390	12390;12414;12437		217.64	60.313	1	1814400			57079	6009	47100	47142	62436;62437;62438	62436					0.12030326093884014
TLACDVALLR	10	Unmodified	_TLACDVALLR_					0	0	0			REV__ENST00000609118.1_1_1:111506346-111506562:+|nuORF	REV__ENST00000609118.1_1_1:111506346-111506562:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.807861328125	2	537.802434	1073.59032	0.16147	8.6837E-05	1.5279	0.00082169	1.6893	0.00090853	538.3049541947763	66.132	0.24775	63.436	63.269	63.517	-2.6958					6	4	2	0	0	0	0.026782	1	5112	5112		37.812	20.447	1	53051	+		57080	28100	47101	47143	62439	62439					0.056463586339759786
TLACDVALLR	10	Unmodified	_TLACDVALLR_					0	0	0			REV__ENST00000609118.1_1_1:111506346-111506562:+|nuORF	REV__ENST00000609118.1_1_1:111506346-111506562:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	537.802434	1073.59032	0.5835	0.00031381	5.254	0.0028256	5.8375	0.0031394	537.805032992394	63.422	0.42972	63.422	63.14	63.57	0	-0.0072317	0.00062798	NaN	37.812	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	413220	+		57081	28100	47101	47143							0.056463586339759786
TLADIIARL	9	Unmodified	_TLADIIARL_					0	0	0		ENSG00000205978|ENST00000382554|NYNRIN;nc|ENSG00000205978|Q9P2P1-2|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	MULTI-MSMS	OvCa99_classI_Rep5	1	493.3067321777344	2	493.305667	984.596781	0.66511	0.0003281	1.316	0.00064921	1.9812	0.00097732	493.30625366563197	139.96	3.1759	139.96	139.56	142.73	0					177	64	5	0	0	0	0.0070314	4	16333	16333;16356;16380;16404		185.55	23.297	1	2536200			57082	9092	47102	47144	62440;62441;62442;62443	62440					0.10386619857001733
TLADIIARL	9	Unmodified	_TLADIIARL_					0	0	0		ENSG00000205978|ENST00000382554|NYNRIN;nc|ENSG00000205978|Q9P2P1-2|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	493.305667	984.596781	-0.60438	-0.00029815	0.19491	9.6152E-05	-0.40947	-0.00020199	493.30567961324283	140.01	0.63713	139.78	139.45	140.09	-0.22696	-0.056501	-0.00054192	NaN	185.55	23	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20823			57083	9092	47102	47144							0.10386619857001733
TLADIIARL	9	Unmodified	_TLADIIARL_					0	0	0		ENSG00000205978|ENST00000382554|NYNRIN;nc|ENSG00000205978|Q9P2P1-2|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	ENSG00000205978|ENST00000382554|NYNRIN	MULTI-MATCH	OvCa9_classI_Rep3	3		2	493.305667	984.596781	-2.4324	-0.0011999	2.4101	0.0011889	-0.022348	-1.1024E-05	493.30672741489843	140.86	1.2285	139.83	139.43	140.66	-1.0339	-0.016251	0.0016436	NaN	185.55	41	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30447			57084	9092	47102	47144							0.10386619857001733
TLADLLALR	9	Unmodified	_TLADLLALR_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11;DNAH11|p.L1769Yfs*9|1|0.08|ENSG00000105877|chr7:21659007-21659008|-/TATGCAAGAAACGGTGCGTCATT|frameshift_variant	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MULTI-MSMS	OvCa99_classI_Rep5	1	493.3073425292969	2	493.305667	984.596781	0.66511	0.0003281	1.316	0.00064921	1.9812	0.00097732	493.30625366563197	139.96	3.1759	139.96	139.56	142.73	0					177	64	5	0	0	0	0.2422	1	16449	16449		69.628	2.134	1	2536200			57085	2511	47103	47145	62444	62444					0.10386619856990364
TLADLVHHV	9	Unmodified	_TLADLVHHV_					0	0	0		TRRAP|p.L2853Nfs*14|1|0.37|ENSG00000196367|chr7:98978847-98978848|-/AA|frameshift_variant;TRRAP|p.Q3700Cfs*14|1|0.37|ENSG00000196367|chr7:99011251-99011252|-/GTGCGTTAAATCTGTCACCAGAA|frameshift_variant;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.V815Afs*78|1|0.09|ENSG00000196367|chr7:98917500-98917501|-/CCTCCTCTATCCTCCTCATCCT|frameshift_variant;TRRAP|p.F1061Yfs*20|1|0.05|ENSG00000196367|chr7:98929994-98929995|-/A|frameshift_variant;TRRAP|p.G1086Afs*42|1|0.04|ENSG00000196367|chr7:98930067-98930068|-/GGCCACTTGTATTTGTTCACTTTTATTTCCGATCC|frameshift_variant	TRRAP|p.L2853Nfs*14|1|0.37|ENSG00000196367|chr7:98978847-98978848|-/AA|frameshift_variant;TRRAP|p.G1086Afs*42|1|0.04|ENSG00000196367|chr7:98930067-98930068|-/GGCCACTTGTATTTGTTCACTTTTATTTCCGATCC|frameshift_variant	TRRAP|p.L2853Nfs*14|1|0.37|ENSG00000196367|chr7:98978847-98978848|-/AA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	502.7816162109375	2	502.779816	1003.54508	2.3863	0.0011998	-0.93656	-0.00047088	1.4497	0.00072889	502.7794058412755	84.452	1.657	84.452	84.093	85.75	0					99	39	4	0	0	0	0.037627	3	8806	8806;8837;8868		128.86	47.748	1	15431000			57086	8597;36286	47104	47146	62445;62446;62447	62445					0.04344876163088429
TLADLVHHV	9	Unmodified	_TLADLVHHV_					0	0	0		TRRAP|p.L2853Nfs*14|1|0.37|ENSG00000196367|chr7:98978847-98978848|-/AA|frameshift_variant;TRRAP|p.Q3700Cfs*14|1|0.37|ENSG00000196367|chr7:99011251-99011252|-/GTGCGTTAAATCTGTCACCAGAA|frameshift_variant;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.V815Afs*78|1|0.09|ENSG00000196367|chr7:98917500-98917501|-/CCTCCTCTATCCTCCTCATCCT|frameshift_variant;TRRAP|p.F1061Yfs*20|1|0.05|ENSG00000196367|chr7:98929994-98929995|-/A|frameshift_variant;TRRAP|p.G1086Afs*42|1|0.04|ENSG00000196367|chr7:98930067-98930068|-/GGCCACTTGTATTTGTTCACTTTTATTTCCGATCC|frameshift_variant	TRRAP|p.L2853Nfs*14|1|0.37|ENSG00000196367|chr7:98978847-98978848|-/AA|frameshift_variant;TRRAP|p.G1086Afs*42|1|0.04|ENSG00000196367|chr7:98930067-98930068|-/GGCCACTTGTATTTGTTCACTTTTATTTCCGATCC|frameshift_variant	TRRAP|p.L2853Nfs*14|1|0.37|ENSG00000196367|chr7:98978847-98978848|-/AA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	502.78082275390625	2	502.779816	1003.54508	0.63009	0.0003168	-1.0697	-0.00053781	-0.43958	-0.00022101	502.7791697115148	87.3	1.9399	85.869	85.228	87.168	-1.4311					89	38	4	0	0	0	0.032351	8	7619	7602;7606;7612;7619;7625;7632;7638;7645		133.47	64.984	1	739020			57087	8597;36286	47104	47146	62448;62449;62450;62451;62452;62453;62454;62455	62451					0.04344876163088429
TLADLVHHV	9	Unmodified	_TLADLVHHV_					0	0	0		TRRAP|p.L2853Nfs*14|1|0.37|ENSG00000196367|chr7:98978847-98978848|-/AA|frameshift_variant;TRRAP|p.Q3700Cfs*14|1|0.37|ENSG00000196367|chr7:99011251-99011252|-/GTGCGTTAAATCTGTCACCAGAA|frameshift_variant;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.V815Afs*78|1|0.09|ENSG00000196367|chr7:98917500-98917501|-/CCTCCTCTATCCTCCTCATCCT|frameshift_variant;TRRAP|p.F1061Yfs*20|1|0.05|ENSG00000196367|chr7:98929994-98929995|-/A|frameshift_variant;TRRAP|p.G1086Afs*42|1|0.04|ENSG00000196367|chr7:98930067-98930068|-/GGCCACTTGTATTTGTTCACTTTTATTTCCGATCC|frameshift_variant	TRRAP|p.L2853Nfs*14|1|0.37|ENSG00000196367|chr7:98978847-98978848|-/AA|frameshift_variant;TRRAP|p.G1086Afs*42|1|0.04|ENSG00000196367|chr7:98930067-98930068|-/GGCCACTTGTATTTGTTCACTTTTATTTCCGATCC|frameshift_variant	TRRAP|p.L2853Nfs*14|1|0.37|ENSG00000196367|chr7:98978847-98978848|-/AA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	502.7804260253906	2	502.779816	1003.54508	-0.91454	-0.00045981	0.76477	0.00038451	-0.14977	-7.53E-05	502.7801358648497	88.06	1.6512	85.929	85.442	87.093	-2.1309					81	32	4	0	0	0	0.023378	8	5339	5323;5327;5333;5339;5346;5352;5359;5366		143.02	56.251	1	1091100			57088	8597;36286	47104	47146	62456;62457;62458;62459;62460;62461;62462;62463	62459					0.04344876163088429
TLADLVHHV	9	Unmodified	_TLADLVHHV_					0	0	0		TRRAP|p.L2853Nfs*14|1|0.37|ENSG00000196367|chr7:98978847-98978848|-/AA|frameshift_variant;TRRAP|p.Q3700Cfs*14|1|0.37|ENSG00000196367|chr7:99011251-99011252|-/GTGCGTTAAATCTGTCACCAGAA|frameshift_variant;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP;TRRAP|p.V815Afs*78|1|0.09|ENSG00000196367|chr7:98917500-98917501|-/CCTCCTCTATCCTCCTCATCCT|frameshift_variant;TRRAP|p.F1061Yfs*20|1|0.05|ENSG00000196367|chr7:98929994-98929995|-/A|frameshift_variant;TRRAP|p.G1086Afs*42|1|0.04|ENSG00000196367|chr7:98930067-98930068|-/GGCCACTTGTATTTGTTCACTTTTATTTCCGATCC|frameshift_variant	TRRAP|p.L2853Nfs*14|1|0.37|ENSG00000196367|chr7:98978847-98978848|-/AA|frameshift_variant;TRRAP|p.G1086Afs*42|1|0.04|ENSG00000196367|chr7:98930067-98930068|-/GGCCACTTGTATTTGTTCACTTTTATTTCCGATCC|frameshift_variant	TRRAP|p.L2853Nfs*14|1|0.37|ENSG00000196367|chr7:98978847-98978848|-/AA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.78082275390625	2	502.779816	1003.54508	-2.1336	-0.0010727	1.8123	0.00091117	-0.32133	-0.00016156	502.780628170976	88.519	1.7434	85.916	85.477	87.221	-2.6027					83	34	4	0	0	0	0.055688	6	7594	7546;7554;7567;7579;7594;7605		115.46	62.108	1	888120			57089	8597;36286	47104	47146	62464;62465;62466;62467;62468;62469	62468					0.04344876163088429
TLADVLYHV	9	Unmodified	_TLADVLYHV_					0	0	0		ENST00000520079.1_1_8:37996261-37996586:+|nuORF;nc|ENSG00000129691|Q9UBL3-2|ASH2L;nc|ENSG00000129691|Q9UBL3-3|ASH2L;ENSG00000129691|ENST00000343823|ASH2L;POLB-ASH2L|1|fusion	ENST00000520079.1_1_8:37996261-37996586:+|nuORF	ENST00000520079.1_1_8:37996261-37996586:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	515.78271484375	2	515.782025	1029.5495	2.3027	0.0011877	-0.034939	-1.8021E-05	2.2678	0.0011697	515.7819059025395	116.16	1.2672	116.16	115.82	117.09	0					46	27	3	0	0	0	0.048552	2	13270	13270;13293		119.56	59.263	1	2143200			57090	3943	47105	47147	62470;62471	62470					0.035903405860153725
TLADYLHLL	9	Unmodified	_TLADYLHLL_					0	0	0		ENSG00000127125|ENST00000372561|PPCS;ENST00000471420.1_1_1:42922476-42938912:+|nuORF;ENST00000472013.1_1_1:42922230-42922863:+|nuORF	ENSG00000127125|ENST00000372561|PPCS	ENSG00000127125|ENST00000372561|PPCS	MULTI-MSMS	OvCa99_classI_Rep5	1	529.798095703125	2	529.797675	1057.5808	1.149	0.00060874	0.69329	0.0003673	1.8423	0.00097605	529.7980443166026	145.65	1.1926	145.65	145.18	146.38	0					43	24	2	0	0	0	0.14739	2	17029	17029;17053		85.359	9.532	1	429980			57091	3820	47106	47148	62472;62473	62472					0.054309136201027286
TLAEIAKVEL	10	Unmodified	_TLAEIAKVEL_					0	0	0		ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.8235473632812	2	543.823889	1085.63323	0.20309	0.00011045	-0.27892	-0.00015168	-0.075827	-4.1236E-05	543.8235136386728	110.59	1.8945	108.99	108.49	110.38	-1.6011					77	35	3	0	0	0	0.27679	2	10206	10206;10218		83.647	14.019	1	177830			57092	5334	47107	47149	62474;62475	62474					0.09383451963026346
TLAEIAKVEL	10	Unmodified	_TLAEIAKVEL_					0	0	0		ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-MATCH	OvCa99_classI_Rep5	1		2	543.823889	1085.63323	1.4786	0.00080408	0.60143	0.00032707	2.08	0.0011312	543.824084607954	108.94	1.0524	108.94	108.63	109.68	0	0.016904	0.00047176	NaN	83.647	41	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1462400			57093	5334	47107	47149							0.09383451963026346
TLAEIAKVEL	10	Unmodified	_TLAEIAKVEL_					0	0	0		ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	543.823889	1085.63323	-0.26744	-0.00014544	0.26958	0.00014661	0.002147	1.1676E-06	543.8238335479551	109.17	1.1383	108.96	108.48	109.62	-0.21523	0.033983	0.00011083	NaN	83.647	60	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149690			57094	5334	47107	47149							0.09383451963026346
TLAEIAKVEL	10	Unmodified	_TLAEIAKVEL_					0	0	0		ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-MATCH	OvCa9_classI_Rep3	3		2	543.823889	1085.63323	0.17894	9.7314E-05	-0.16722	-9.0939E-05	0.011723	6.3755E-06	543.823487188175	109.95	1.1554	108.81	108.4	109.56	-1.1444	-0.11633	-0.00036425	NaN	83.647	61	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155630			57095	5334	47107	47149							0.09383451963026346
TLAELHISL	9	Unmodified	_TLAELHISL_					0	0	0		nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;nc|ENSG00000140853|Q86WI3-2|NLRC5;nc|ENSG00000140853|Q86WI3-5|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5;ENST00000539881.5_1_16:57068826-57081664:+|nuORF	nc|ENSG00000140853|Q86WI3-4|NLRC5	nc|ENSG00000140853|Q86WI3-4|NLRC5	MULTI-MSMS	OvCa99_classI_Rep5	1	498.790283203125	2	498.78985	995.565146	2.2734	0.0011339	-0.27706	-0.0001382	1.9963	0.00099573	498.7896833539502	116.2	1.1316	116.2	115.86	117	0					51	24	3	0	0	0	0.13482	1	13289	13289		87.754	15.877	1	394890			57096	4878	47108	47150	62476	62476					0.06718627103043673
TLAETLVNL	9	Unmodified	_TLAETLVNL_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	MSMS	OvCa9_classI_Rep3	3	487.2822570800781	2	487.281857	972.549162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.43	1	131.31	130.81	131.81	-1.1249								0	0	0	0.076951	1	10590	10590		74.255	13.283	1				57097	4794	47109	47151	62477	62477					0.06178920866148019
TLAETLVNL	9	Unmodified	_TLAETLVNL_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	MSMS	OvCa9_classI_Rep3	3	487.2814636230469	2	487.281857	972.549162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.56	1	131.44	130.94	131.94	-1.1249								0	0	0	0.026252	1	10606	10606		104.75	11.551	1				57098	4794	47109	47151	62478	62478					0.06178920866148019
TLAETLVNL	9	Unmodified	_TLAETLVNL_					0	0	0		ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	ENSG00000139645|ENST00000267116|ANKRD52	MSMS	OvCa9_classI_Rep4_	4	487.2818298339844	2	487.281857	972.549162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.7	1	131.2	130.7	131.7	-1.5015								0	0	0	0.032201	1	12782	12782		87.754	16.459	1				57099	4794	47109	47151	62479	62479					0.06178920866148019
TLAEVSTRL	9	Unmodified	_TLAEVSTRL_					0	0	0		ENSG00000142178|ENST00000270162|SIK1	ENSG00000142178|ENST00000270162|SIK1	ENSG00000142178|ENST00000270162|SIK1	MULTI-SECPEP	OvCa9_classI_Rep3	3	495.7724914550781	2	495.284931	988.55531	-0.25884	-0.0001282	-0.44735	-0.00022157	-0.70619	-0.00034977	495.2847566246055	80.479	1.2791	78.157	77.827	79.106	-2.3226					46	24	2	0	0	0	0.027462	1	4431	4431		45.972	6.7194	1	138980			57100	4958	47110	47152	62480	62480					0.060574390976512404
TLAEVSTRL	9	Unmodified	_TLAEVSTRL_					0	0	0		ENSG00000142178|ENST00000270162|SIK1	ENSG00000142178|ENST00000270162|SIK1	ENSG00000142178|ENST00000270162|SIK1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	495.284931	988.55531	0.56795	0.0002813	-1.1333	-0.00056132	-0.56537	-0.00028002	495.28444578507606	80.139	1.4456	78.444	77.923	79.368	-1.6951	0.14453	-0.0006059	NaN	45.972	46	28	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80950			57101	4958	47110	47152							0.060574390976512404
TLAFSKKKID	10	Unmodified	_TLAFSKKKID_					0	0	0		nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8427124023438	2	575.845156	1149.67576	-3.1773	-0.0018296	-0.077675	-4.4729E-05	-3.255	-0.0018744	575.8447773729116	141.87	3.8997	140.86	138.96	142.86	-1.0106					243	78	6	0	0	0	0.72142	1	11793	11793		28.081	1.3886	1	129610			57102	1564	47111	47153	62481	62481					0.10690847091291289
TLAGDVHIV	9	Unmodified	_TLAGDVHIV_					0	0	0		ENST00000548539.1_1_12:110929849-110934008:-|nuORF;ENST00000548259.1_1_12:110930799-110939856:-|nuORF;ENSG00000111237|ENST00000549578|VPS29;nc|ENSG00000111237|Q9UBQ0-2|VPS29	ENST00000548539.1_1_12:110929849-110934008:-|nuORF	ENST00000548539.1_1_12:110929849-110934008:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	462.76214599609375	2	462.761092	923.507631	2.7032	0.001251	-0.3755	-0.00017377	2.3277	0.0010772	462.7608568239169	86.49	0.86416	86.49	86.271	87.135	0					38	20	3	0	0	0	0.21395	1	9126	9126		73.975	26.059	1	1384600			57103	2814	47112	47154	62482	62482					0.04281784897477792
TLAGDVHIV	9	Unmodified	_TLAGDVHIV_					0	0	0		ENST00000548539.1_1_12:110929849-110934008:-|nuORF;ENST00000548259.1_1_12:110930799-110939856:-|nuORF;ENSG00000111237|ENST00000549578|VPS29;nc|ENSG00000111237|Q9UBQ0-2|VPS29	ENST00000548539.1_1_12:110929849-110934008:-|nuORF	ENST00000548539.1_1_12:110929849-110934008:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	462.761092	923.507631	1.6091	0.00074465	-1.6693	-0.00077247	-0.060125	-2.7823E-05	462.76023232678773	88.124	1.5251	86.757	86.446	87.971	-1.3676	0.083647	-0.0010791	NaN	73.975	59	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59547			57104	2814	47112	47154							0.04281784897477792
TLAGDVHIV	9	Unmodified	_TLAGDVHIV_					0	0	0		ENST00000548539.1_1_12:110929849-110934008:-|nuORF;ENST00000548259.1_1_12:110930799-110939856:-|nuORF;ENSG00000111237|ENST00000549578|VPS29;nc|ENSG00000111237|Q9UBQ0-2|VPS29	ENST00000548539.1_1_12:110929849-110934008:-|nuORF	ENST00000548539.1_1_12:110929849-110934008:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	462.761092	923.507631	-0.4899	-0.00022671	0.50757	0.00023489	0.017677	8.1801E-06	462.76119566177533	88.833	1.5383	86.702	86.364	87.902	-2.1309	0.029073	0.00093562	NaN	73.975	58	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	86623			57105	2814	47112	47154							0.04281784897477792
TLAGDVHIV	9	Unmodified	_TLAGDVHIV_					0	0	0		ENST00000548539.1_1_12:110929849-110934008:-|nuORF;ENST00000548259.1_1_12:110930799-110939856:-|nuORF;ENSG00000111237|ENST00000549578|VPS29;nc|ENSG00000111237|Q9UBQ0-2|VPS29	ENST00000548539.1_1_12:110929849-110934008:-|nuORF	ENST00000548539.1_1_12:110929849-110934008:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	462.761092	923.507631	-0.28891	-0.0001337	0.068047	3.1489E-05	-0.22087	-0.00010221	462.76103024601656	89.347	1.188	86.744	86.434	87.622	-2.6027	0.070886	0.00052883	NaN	73.975	44	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66407			57106	2814	47112	47154							0.04281784897477792
TLAGQFVPVV	10	Unmodified	_TLAGQFVPVV_					0	0	0			REV__ENST00000503202.1_1_4:83323057-83323543:-|nuORF	REV__ENST00000503202.1_1_4:83323057-83323543:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.801513671875	2	515.800217	1029.58588	-1.7137	-0.00088392	1.0925	0.00056351	-0.62119	-0.00032041	515.8005939236219	88.616	1.2917	86.013	85.781	87.073	-2.6027					52	25	3	0	0	0	0.48198	1	7574	7574		56.721	0	1	441230	+		57107	26841	47113	47155	62483	62483					0.07227217482704873
TLAGTQKFSIR	11	Unmodified	_TLAGTQKFSIR_					0	0	0		MGA|p.D2061Vfs*3|1|0.09|ENSG00000174197|chr15:41749788-41749789|-/T|frameshift_variant;MGA|p.D2295Tfs*40|1|0.55|ENSG00000174197|chr15:41750489-41750489|T/-|frameshift_variant;ENSG00000174197|ENST00000703841|MGA;nc|ENSG00000174197|Q8IWI9|MGA	MGA|p.D2061Vfs*3|1|0.09|ENSG00000174197|chr15:41749788-41749789|-/T|frameshift_variant	MGA|p.D2061Vfs*3|1|0.09|ENSG00000174197|chr15:41749788-41749789|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3513793945312	2	611.351137	1220.68772	-2.0282	-0.0012399	1.626	0.00099405	-0.40221	-0.00024589	611.3520273138611	126.24	1.2813	124.82	124.48	125.76	-1.4143					74	25	4	0	0	0	0.70142	1	12046	12046		29.17	3.596	1	434950			57108	7446	47114	47156	62484	62484					0.08620463834449765
TLAISRNM	8	Unmodified	_TLAISRNM_					0	0	0			REV__ENST00000469778.1_1_9:94794749-94800706:-|nuORF	REV__ENST00000469778.1_1_9:94794749-94800706:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.2859191894531	2	453.247295	904.480036	0.50198	0.00022752	-4.3949	-0.001992	-3.8929	-0.0017645	453.24529996310724	48.172	0.45975	45.064	44.888	45.348	-3.1077					12	8	2	0	0	0	0.028476	1	2656	2656		24.203	2.2429	1	27030	+		57109	17217	47115	47157	62485	62485					0.023975583655897026
TLAIWRSLRRR	11	Unmodified	_TLAIWRSLRRR_					0	0	0			REV__nc|ENSG00000196689|Q8NER1-3|TRPV1	REV__nc|ENSG00000196689|Q8NER1-3|TRPV1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.2937927246094	3	476.628388	1426.86333	0.37892	0.0001806	2.1872	0.0010425	2.5661	0.0012231	476.62927157339715	75.992	0.4791	73.053	72.839	73.318	-2.9389					12	9	2	0	0	0	0.025995	1	5989	5989		36.318	7.7409	1	16579	+		57110	27761	47116	47158	62486	62486					0.16697723139168374
TLAKRKGGP	9	Unmodified	_TLAKRKGGP_					0	0	0			REV__tr|A0A7D6VSJ3|A0A7D6VSJ3_9CLOTPolysaccharidedeacetylasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07020PE=3SV=1	REV__tr|A0A7D6VSJ3|A0A7D6VSJ3_9CLOTPolysaccharidedeacetylasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07020PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	464.2918701171875	2	464.290351	926.566149	-0.52136	-0.00024206	0.19024	8.8327E-05	-0.33111	-0.00015373	464.2903804442876	70.348	1.2622	70.348	70.046	71.308	0					75	31	4	0	0	0	0.59983	1	6727	6727		31.955	1.4512	1	16927000	+		57111	31509	47117	47159	62487	62487					0.0999288626261432
TLAKVVYPLF	10	Unmodified	_TLAKVVYPLF_					0	0	0			REV__tr|A0A553SPD3|A0A553SPD3_NIACIDihydrolipoamideacetyltransferasecomponentofpyruvatedehydrogenasecomplexOS=NialliacirculansOX=1397GN=CEQ21_26195PE=3SV=1	REV__tr|A0A553SPD3|A0A553SPD3_NIACIDihydrolipoamideacetyltransferasecomponentofpyruvatedehydrogenasecomplexOS=NialliacirculansOX=1397GN=CEQ21_26195PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.84423828125	2	575.847167	1149.67978	-2.8369	-0.0016336	-3.8044	-0.0021908	-6.6414	-0.0038244	575.8447938780345	149.53	0.7543	148.1	147.57	148.32	-1.4344					29	15	2	0	0	0	0.73378	1	14722	14722		26.693	2.1737	1	24094	+		57112	30527	47118	47160	62488	62488					0.11092936584987001
TLAKVVYPLF	10	Unmodified	_TLAKVVYPLF_					0	0	0			REV__tr|A0A553SPD3|A0A553SPD3_NIACIDihydrolipoamideacetyltransferasecomponentofpyruvatedehydrogenasecomplexOS=NialliacirculansOX=1397GN=CEQ21_26195PE=3SV=1	REV__tr|A0A553SPD3|A0A553SPD3_NIACIDihydrolipoamideacetyltransferasecomponentofpyruvatedehydrogenasecomplexOS=NialliacirculansOX=1397GN=CEQ21_26195PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	575.847167	1149.67978	-4.8244	-0.0027781	-2.08	-0.0011978	-6.9044	-0.0039759	575.8457159468103	148.81	0.90178	147.86	147.5	148.4	-0.9512	-0.1187	0.001077	NaN	26.693	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19775	+		57113	30527	47118	47160							0.11092936584987001
TLAKVVYPLF	10	Unmodified	_TLAKVVYPLF_					0	0	0			REV__tr|A0A553SPD3|A0A553SPD3_NIACIDihydrolipoamideacetyltransferasecomponentofpyruvatedehydrogenasecomplexOS=NialliacirculansOX=1397GN=CEQ21_26195PE=3SV=1	REV__tr|A0A553SPD3|A0A553SPD3_NIACIDihydrolipoamideacetyltransferasecomponentofpyruvatedehydrogenasecomplexOS=NialliacirculansOX=1397GN=CEQ21_26195PE=3SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	575.847167	1149.67978	-2.8369	-0.0016336	-3.8044	-0.0021908	-6.6414	-0.0038244	575.8447938780345	149.53	0.7543	148.1	147.57	148.32	-1.4344	0.1187	-0.000909	NaN	26.693	29	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24094	+		57114	30527	47118	47160							0.11092936584987001
TLALAPASTQS	11	Unmodified	_TLALAPASTQS_					0	0	0		SRCAP|p.L2600Afs*30|1|0.06|ENSG00000080603|chr16:30737837-30737838|-/G|frameshift_variant;nc|ENSG00000080603|Q6ZRS2-3|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;ENSG00000080603|ENST00000262518|SRCAP	SRCAP|p.L2600Afs*30|1|0.06|ENSG00000080603|chr16:30737837-30737838|-/G|frameshift_variant	SRCAP|p.L2600Afs*30|1|0.06|ENSG00000080603|chr16:30737837-30737838|-/G|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.7578735351562	2	530.287671	1058.56079	0.23484	0.00012453	0.026421	1.401E-05	0.26126	0.00013855	530.2877107292608	57.992	0.50465	57.992	57.818	58.322	0					17	11	2	0	0	0	0.02538	1	4936	4936		45.972	3.5761	1	823380			57115	1638	47119	47161	62489	62489					0.03385117889456524
TLALFLSGKGN	11	Unmodified	_TLALFLSGKGN_					0	0	0			REV__ENST00000078429.8_1_19:3121173-3121524:+|nuORF	REV__ENST00000078429.8_1_19:3121173-3121524:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.8014526367188	2	560.821681	1119.62881	2.9756	0.0016688	-0.79885	-0.00044801	2.1767	0.0012208	560.820872514514	113.22	0.30905	113.22	113.11	113.42	0					10	6	2	0	0	0	0.025656	1	12908	12908		47.96	16.43	1	170670	+		57116	23676	47120	47162	62490	62490					0.07377987540144204
TLALMIVNL	9	Unmodified	_TLALMIVNL_					0	0	0		ENSG00000120029|ENST00000370033|ARMH3;nc|ENSG00000120029|Q5T2E6-3|ARMH3;nc|ENSG00000120029|Q5T2E6-2|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	ENSG00000120029|ENST00000370033|ARMH3	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.2989196777344	2	494.298996	986.583439	-1.4465	-0.00071498	-2.1296	-0.0010527	-3.576	-0.0017676	494.2977438636246	125.06	1.7072	123.67	123.28	124.99	-1.3908					64	33	3	0	0	0	0.33652	1	11871	11871		58.782	7.4465	1	176560			57117	3412	47121	47163	62491	62491					0.08961045753392227
TLANAIVLKH	10	Unmodified	_TLANAIVLKH_					0	0	0			REV__nc|ENSG00000196091|Q00872-7|MYBPC1	REV__nc|ENSG00000196091|Q00872-7|MYBPC1	MULTI-MSMS	OvCa9_classI_Rep2	2	540.33056640625	2	540.332216	1078.64988	-1.5762	-0.00085169	-2.2598	-0.001221	-3.836	-0.0020727	540.3309156564876	138.68	4.2384	138.45	137.13	141.37	-0.22697					227	86	3	0	0	0	0.73378	1	13727	13727		26.693	3.6504	1	66382	+		57118	29072	47122	47164	62492	62492					0.1136999763964468
TLAPGSVPVS	10	Unmodified	_TLAPGSVPVS_					0	0	0			REV__ENST00000403027.6_1_5:154238316-154238370:+|nuORF	REV__ENST00000403027.6_1_5:154238316-154238370:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	464.2608947753906	2	464.260925	926.507297	-0.41772	-0.00019393	0.36513	0.00016951	-0.052592	-2.4417E-05	464.26103014792375	78.429	1.6496	76.076	75.749	77.399	-2.3527					76	32	4	0	0	0	0.18827	1	4179	4179		96.19	0.37527	1	859540	+		57119	25424	47123	47165	62493	62493					0.041103651776211336
TLAQQILL	8	Unmodified	_TLAQQILL_					0	0	0			REV__ENST00000563636.5_1_16:89961526-89967207:+|nuORF	REV__ENST00000563636.5_1_16:89961526-89967207:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	450.267578125	2	450.28166	898.548768	2.9456	0.0013264	-3.3748	-0.0015196	-0.42915	-0.00019324	450.27994949129015	70.99	1.6566	68.42	67.765	69.421	-2.5707					60	31	3	0	0	0	0.028476	1	5729	5729		88.643	0	1	156010	+		57120	19715	47124	47166	62494	62494					0.09543545936958253
TLAQRVKEV	9	Unmodified	_TLAQRVKEV_					0	0	0		nc|ENSG00000115307|Q9Y679-3|AUP1;ENSG00000115307|ENST00000377526|AUP1;ENST00000462297.1_1_2:74754523-74754670:-|nuORF;ENST00000486234.1_1_2:74754275-74754965:-|nuORF;ENST00000466894.5_1_2:74754206-74756164:-|nuORF;ENST00000463900.5_1_2:74753929-74756164:-|nuORF	nc|ENSG00000115307|Q9Y679-3|AUP1	nc|ENSG00000115307|Q9Y679-3|AUP1	MULTI-MSMS	OvCa99_classI_Rep5	1	522.314453125	2	522.314023	1042.61349	-0.76101	-0.00039748	0.66474	0.0003472	-0.096269	-5.0283E-05	522.3142734196907	47.621	1.1191	47.621	47.336	48.455	0					67	25	5	0	0	0	0.030867	2	3431	3431;3454		134.77	44.165	1	4119400			57121	3084	47125	47167	62495;62496	62495					0.0938912074293512
TLAQTYPVCE	10	Unmodified	_TLAQTYPVCE_					0	0	0			REV__MOCS3|p.A404Ffs*15|1|0.29|ENSG00000124217|chr20:50960050-50960051|-/ATTC|frameshift_variant	REV__MOCS3|p.A404Ffs*15|1|0.29|ENSG00000124217|chr20:50960050-50960051|-/ATTC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	562.7664184570312	2	562.768257	1123.52196	0.060279	3.3923E-05	-3.716	-0.0020913	-3.6557	-0.0020573	562.7660370416633	41.626	6.1897	41.626	40.795	46.985	0					363	141	3	0	0	0	0.44431	2	3188	2610;3188		62.107	9.1707	1	1452500	+		57122	18676	47126	47168	62497;62498	62498					-0.03485930736565024
TLARALASP	9	Unmodified	_TLARALASP_					0	0	0			REV__ENSG00000179921|ENST00000519574|GPBAR1	REV__ENSG00000179921|ENST00000519574|GPBAR1	MULTI-MSMS	OvCa9_classI_Rep2	2	450.26824951171875	2	450.269084	898.523616	1.3254	0.0005968	-1.7002	-0.00076554	-0.37475	-0.00016874	450.2680012991639	61.146	3.3168	58.387	57.67	60.987	-2.7593					139	63	5	0	0	0	0.37135	1	4499	4499		54.776	1.4249	1	6706400	+		57123	22147	47127	47169	62499	62499					0.07029491134369437
TLARALASP	9	Unmodified	_TLARALASP_					0	0	0			REV__ENSG00000179921|ENST00000519574|GPBAR1	REV__ENSG00000179921|ENST00000519574|GPBAR1	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.2701110839844	2	450.269084	898.523616	0.66588	0.00029983	-1.2562	-0.00056561	-0.59027	-0.00026578	450.2683337986321	61.743	3.9648	58.286	57.567	61.531	-3.4577					187	81	5	0	0	0	0.38529	1	4339	4339		53.351	2.016	1	30469000	+		57124	22147	47127	47169	62500	62500					0.07029491134369437
TLARCQALL	9	Unmodified	_TLARCQALL_					0	0	0			REV__nc|ENSG00000160305|Q14689-5|DIP2A	REV__nc|ENSG00000160305|Q14689-5|DIP2A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.766845703125	2	494.784044	987.553536	-0.85084	-0.00042098	0.084479	4.1799E-05	-0.76636	-0.00037918	494.78405064046956	71.655	0.29817	68.199	67.924	68.222	-3.4563					8	5	2	0	0	0	0.027462	1	5474	5474		49.442	21.559	1	19593	+		57125	20655	47128	47170	62501	62501					0.05926106808044551
TLARLVVRP	9	Unmodified	_TLARLVVRP_					0	0	0		ENST00000334295.8_1_18:34376463-34376655:-|nuORF	ENST00000334295.8_1_18:34376463-34376655:-|nuORF	ENST00000334295.8_1_18:34376463-34376655:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.8143920898438	2	512.834926	1023.6553	-0.57885	-0.00029686	-0.73663	-0.00037777	-1.3155	-0.00067463	512.8347497257996	95.865	1.1976	94.037	93.682	94.879	-1.8286					35	23	2	0	0	0	0.027441	1	6348	6348		37.159	0	1	50645			57126	10478	47129	47171	62502	62502					0.14441721222124215
TLARLVVRP	9	Unmodified	_TLARLVVRP_					0	0	0		ENST00000334295.8_1_18:34376463-34376655:-|nuORF	ENST00000334295.8_1_18:34376463-34376655:-|nuORF	ENST00000334295.8_1_18:34376463-34376655:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	512.834926	1023.6553	0.44172	0.00022653	-0.75763	-0.00038854	-0.31592	-0.00016201	512.8344087237958	96.583	0.90142	94.157	93.76	94.661	-2.4256	0.060344	-1.1206E-05	NaN	37.159	30	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46071			57127	10478	47129	47171							0.14441721222124215
TLASPLCTGPM	11	Unmodified	_TLASPLCTGPM_					0	0	0			REV__chr17:81955544-81956356|129|36.61|0.08|8.84|-|2|TE_info:MER81,MER81_dup3157,hAT-Blackjack,DNA,donor,-,81956356,81956436|NOTUM,None|1	REV__chr17:81955544-81956356|129|36.61|0.08|8.84|-|2|TE_info:MER81,MER81_dup3157,hAT-Blackjack,DNA,donor,-,81956356,81956436|NOTUM,None|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.305908203125	2	545.767203	1089.51985	1.3082	0.00071396	-1.5776	-0.00086099	-0.26941	-0.00014704	545.7664092613147	109.84	0.53892	109.84	109.55	110.09	0					17	11	2	0	0	0	0.025315	1	12418	12418		45.972	13.16	1	86495	+		57128	15954	47130	47172	62503	62503					-0.021326827459915876
TLATLAKTLHV	11	Unmodified	_TLATLAKTLHV_					0	0	0		tr|A0A553SM14|A0A553SM14_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21580PE=4SV=1	tr|A0A553SM14|A0A553SM14_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21580PE=4SV=1	tr|A0A553SM14|A0A553SM14_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21580PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.35595703125	2	584.358431	1166.70231	-0.5033	-0.0002941	-2.654	-0.0015509	-3.1573	-0.001845	584.3567763295431	142.42	4.015	140.98	138.81	142.83	-1.4427					242	77	4	0	0	0	0.72473	1	13813	13813		19.104	1.7386	1	214670			57129	33783	47131	47173	62504	62504					0.12562535982578993
TLATQRRL	8	Unmodified	_TLATQRRL_					0	0	0		nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A;ENST00000548578.1_1_12:56999598-57000129:-|nuORF	nc|ENSG00000076108|Q9UIF9-2|BAZ2A;ENST00000548578.1_1_12:56999598-57000129:-|nuORF	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	MULTI-MSMS	OvCa9_classI_Rep2	2	479.79486083984375	2	479.793258	957.571963	0.29407	0.00014109	2.4408	0.0011711	2.7349	0.0013122	479.7942116842969	112.03	1.2323	111.89	111.67	112.9	-0.13961					50	24	3	0	0	0	0.65062	1	10603	10603		53.351	2.016	1	144000			57130	1550;13562	47132	47174	62505	62505					0.0914798477426757
TLCHRLSQ	8	Unmodified	_TLCHRLSQ_					0	0	0			REV__ENSG00000183549|ENST00000331849|ACSM5	REV__ENSG00000183549|ENST00000331849|ACSM5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.7720947265625	2	479.250369	956.486184	-0.95139	-0.00045596	1.0409	0.00049886	0.089525	4.2905E-05	479.24899459143097	73.092	1.3974	69.696	69.253	70.65	-3.3961					35	28	2	0	0	0	0.028476	1	5699	5699		20.947	0	1	43353	+		57131	22369	47133	47175	62506	62506					0.006200765971016153
TLCLSTEVLF	10	Unmodified	_TLCLSTEVLF_					0	0	0		L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|420|3|anti-sense	L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|420|3|anti-sense	L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|420|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	563.844482421875	2	563.29665	1124.57875	-0.86965	-0.00048987	1.7622	0.00099265	0.89258	0.00050279	563.2975894113022	116.32	0.74102	115.28	115	115.74	-1.0414					21	14	3	0	0	0	0.026871	1	8711	8711		37.159	0.71236	1	16493			57132	14698	47134	47176	62507	62507					0.02144116819977171
TLCPICKTS	9	Unmodified	_TLCPICKTS_					0	0	0		BSN|p.P2901Lfs*27|1|0.18|ENSG00000164061|chr3:49660542-49660542|C/-|frameshift_variant;ENSG00000164061|ENST00000296452|BSN;BSN|p.P1524Lfs*10|1|0.21|ENSG00000164061|chr3:49654114-49654115|-/GCCCTGGT|frameshift_variant;BSN|p.P1589Rfs*37|1|0.2|ENSG00000164061|chr3:49654322-49654359|CCACCACCCATGGCTACAGCCAGACAACACCTCCGAGT/-|frameshift_variant	BSN|p.P2901Lfs*27|1|0.18|ENSG00000164061|chr3:49660542-49660542|C/-|frameshift_variant	BSN|p.P2901Lfs*27|1|0.18|ENSG00000164061|chr3:49660542-49660542|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	482.2857971191406	2	483.243363	964.472174	-0.64389	-0.00031115	-2.8168	-0.0013612	-3.4606	-0.0016723	483.2418934616333	89.839	0.82007	87.758	87.288	88.108	-2.0805					22	15	2	0	0	0	0.027455	1	5495	5495		26.693	0	1	23323			57133	162	47135	47177	62508	62508					-0.011483369461984694
TLCPPDDHTP	10	Unmodified	_TLCPPDDHTP_					0	0	0			REV__ENSG00000198734|ENST00000367797|F5	REV__ENSG00000198734|ENST00000367797|F5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.267822265625	2	548.242406	1094.47026	-0.079955	-4.3834E-05	-0.092424	-5.0671E-05	-0.17238	-9.4505E-05	548.2423046535187	64.332	1.2625	60.857	60.539	61.802	-3.475					45	25	3	0	0	0	0.026752	1	4545	4545		27.882	0	1	112440	+	+	57134	23055	47136	47178	62509	62509					-0.07319674430482337
TLCSADCVLY	10	Unmodified	_TLCSADCVLY_					0	0	0		nc|ENSG00000164659|A8MWY0-2|ELAPOR2;nc|ENSG00000164659|A8MWY0-3|ELAPOR2;ENSG00000164659|ENST00000450689|ELAPOR2	nc|ENSG00000164659|A8MWY0-2|ELAPOR2	nc|ENSG00000164659|A8MWY0-2|ELAPOR2	MULTI-SECPEP	OvCa9_classI_Rep3	3	543.2928466796875	2	544.24356	1086.47257	-0.98185	-0.00053437	-2.2816	-0.0012417	-3.2635	-0.0017761	544.2418816219802	82.597	1.2412	80.301	79.887	81.129	-2.2963					49	24	3	0	0	0	0.026915	1	4629	4629		14.865	0	1	50472			57135	6474	47137	47179	62510	62510					-0.06720962017016063
TLCVVMVCI	9	Carbamidomethyl (C)	_TLC(Carbamidomethyl (C))VVMVCI_	TLC(1)VVMVCI		TLC(35)VVMVC(-35)I		0	1	0		SLC30A1|p.E338Lfs*17|1|0.35|ENSG00000170385|chr1:211575894-211575900|CAGATTC/-|frameshift_variant;ENSG00000170385|ENST00000367001|SLC30A1	SLC30A1|p.E338Lfs*17|1|0.35|ENSG00000170385|chr1:211575894-211575900|CAGATTC/-|frameshift_variant	SLC30A1|p.E338Lfs*17|1|0.35|ENSG00000170385|chr1:211575894-211575900|CAGATTC/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	519.2619018554688	2	519.263242	1036.51193	0.094981	4.932E-05	-1.4268	-0.00074087	-1.3318	-0.00069155	519.2629303635302	161.15	0.80554	161.15	160.56	161.36	0					26	15	3	0	0	0	0.44294	1	18885	18885		47.916	12.715	2	73454			57136	7099	47138	47180	62511	62511	70				-0.004865332671442957
TLDDKKVYL	9	Unmodified	_TLDDKKVYL_					0	0	0		ENST00000466171.1_1_2:118694276-118701638:-|nuORF;ENSG00000125633|ENST00000376300|CCDC93	ENST00000466171.1_1_2:118694276-118701638:-|nuORF	ENST00000466171.1_1_2:118694276-118701638:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	547.8076782226562	2	547.808239	1093.60193	-0.14612	-8.0044E-05	0.015237	8.3469E-06	-0.13088	-7.1697E-05	547.8079797870442	64.983	1.1941	64.983	64.71	65.904	0					84	28	4	0	0	0	0.34132	1	5957	5957		58.23	10.573	1	5445400			57137	3718	47139	47181	62512	62512					0.058868789289590495
TLDEKIEKV	9	Unmodified	_TLDEKIEKV_					0	0	0		nc|ENSG00000124228|Q96GQ7|DDX27;DDX27|p.E703Dfs*18|1|0.04|ENSG00000124228|chr20:49242105-49242106|-/TTTGCAGCCCGTGGCTTCCTGTGTT|frameshift_variant;ENSG00000124228|ENST00000618172|DDX27;ENST00000484427.5_1_20:47835892-47850293:+|nuORF;DDX27|p.C321Vfs*21|1|0.11|ENSG00000124228|chr20:49228875-49228876|-/G|frameshift_variant	nc|ENSG00000124228|Q96GQ7|DDX27	nc|ENSG00000124228|Q96GQ7|DDX27	MULTI-MSMS	OvCa99_classI_Rep5	1	537.8070678710938	2	537.805697	1073.59684	-0.39999	-0.00021512	0.023077	1.2411E-05	-0.37691	-0.0002027	537.8056401762184	55.644	1.2231	55.644	55.358	56.581	0					73	29	3	0	0	0	0.027568	2	4555	4555;4583		138.06	38.95	1	8055600			57138	14999	47140	47182	62513;62514	62513					0.06298575066307421
TLDFPNIQH	9	Unmodified	_TLDFPNIQH_					0	0	0		ENSG00000261652|ENST00000569691|PIERCE2	ENSG00000261652|ENST00000569691|PIERCE2	ENSG00000261652|ENST00000569691|PIERCE2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.6369018554688	2	542.774731	1083.53491	0.057308	3.1105E-05	-3.7094	-0.0020134	-3.6521	-0.0019823	542.772614021374	37.78	0.74572	34.887	34.741	35.487	-2.8925					24	14	3	0	0	0	0.027462	1	1431	1431		27.882	0	1	34951			57139	9503	47141	47183	62515	62515					-0.0035173156215932977
TLDGPWWVE	9	Unmodified	_TLDGPWWVE_					0	0	0			REV__ENST00000476086.6_1_11:47279593-47282064:+|nuORF	REV__ENST00000476086.6_1_11:47279593-47282064:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3182373046875	2	551.763832	1101.51311	-0.80133	-0.00044215	-0.34026	-0.00018774	-1.1416	-0.00062989	551.7632836293782	53.522	0.64913	53.522	53.043	53.692	0					25	14	2	0	0	0	0.027392	1	4235	4235		73.975	8.5094	1	188820	+		57140	26367	47142	47184	62516	62516					-0.03358536310724958
TLDGSLHAV	9	Unmodified	_TLDGSLHAV_					0	0	0		ENSG00000178607|ENST00000433197|ERN1;ENST00000584041.1_1_17:62152499-62207458:-|nuORF;ENST00000583028.1_1_17:62175367-62207458:-|nuORF	ENSG00000178607|ENST00000433197|ERN1;ENST00000583028.1_1_17:62175367-62207458:-|nuORF	ENSG00000178607|ENST00000433197|ERN1	MULTI-MSMS	OvCa99_classI_Rep5	1	456.7444763183594	2	456.742899	911.471246	0.19919	9.0977E-05	0.19586	8.9456E-05	0.39504	0.00018043	456.7428385788835	70.899	1.2208	70.899	70.528	71.749	0					78	30	4	0	0	0	0.22961	1	6809	6809		71.296	0	1	5628900			57141	7766;14006	47143	47185	62517	62517					0.01196908000770236
TLDGSLHAV	9	Unmodified	_TLDGSLHAV_					0	0	0		ENSG00000178607|ENST00000433197|ERN1;ENST00000584041.1_1_17:62152499-62207458:-|nuORF;ENST00000583028.1_1_17:62175367-62207458:-|nuORF	ENSG00000178607|ENST00000433197|ERN1;ENST00000583028.1_1_17:62175367-62207458:-|nuORF	ENSG00000178607|ENST00000433197|ERN1	MULTI-MSMS	OvCa9_classI_Rep2	2	456.742431640625	2	456.742899	911.471246	0.78011	0.00035631	-0.77942	-0.00035599	0.00069825	3.1892E-07	456.74237958282924	73.42	2.2952	71.02	70.378	72.673	-2.3999					92	43	3	0	0	0	0.29717	1	5983	5983		63.306	7.8021	1	256100			57142	7766;14006	47143	47185	62518	62518					0.01196908000770236
TLDGSLHAV	9	Unmodified	_TLDGSLHAV_					0	0	0		ENSG00000178607|ENST00000433197|ERN1;ENST00000584041.1_1_17:62152499-62207458:-|nuORF;ENST00000583028.1_1_17:62175367-62207458:-|nuORF	ENSG00000178607|ENST00000433197|ERN1;ENST00000583028.1_1_17:62175367-62207458:-|nuORF	ENSG00000178607|ENST00000433197|ERN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.74407958984375	2	456.742899	911.471246	-0.14918	-6.8138E-05	0.1443	6.5907E-05	-0.0048857	-2.2315E-06	456.7428091959259	74.432	2.3975	71.201	70.676	73.074	-3.2308					111	49	4	0	0	0	0.12365	2	5810	5810;5860		90.777	0	1	857600			57143	7766;14006	47143	47185	62519;62520	62519					0.01196908000770236
TLDGSLHAV	9	Unmodified	_TLDGSLHAV_					0	0	0		ENSG00000178607|ENST00000433197|ERN1;ENST00000584041.1_1_17:62152499-62207458:-|nuORF;ENST00000583028.1_1_17:62175367-62207458:-|nuORF	ENSG00000178607|ENST00000433197|ERN1;ENST00000583028.1_1_17:62175367-62207458:-|nuORF	ENSG00000178607|ENST00000433197|ERN1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	456.742899	911.471246	-0.094595	-4.3206E-05	-0.33364	-0.00015239	-0.42823	-0.00019559	456.7425486236188	73.35	0.94317	70.863	70.727	71.67	-2.4873	-0.13249	-6.0885E-05	NaN	90.777	23	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8379.7			57144	7766;14006	47143	47185							0.01196908000770236
TLDIGALSLGL	11	Unmodified	_TLDIGALSLGL_					0	0	0		ENST00000523182.5_1_8:37720415-37730726:-|nuORF;ENST00000522774.1_1_8:37728794-37730726:-|nuORF;nc|ENSG00000156675|Q6WKZ4-1|RAB11FIP1;ENSG00000156675|ENST00000330843|RAB11FIP1	ENST00000523182.5_1_8:37720415-37730726:-|nuORF;ENSG00000156675|ENST00000330843|RAB11FIP1	ENSG00000156675|ENST00000330843|RAB11FIP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.8159790039062	2	536.816064	1071.61758	-2.8835	-0.0015479	2.0446	0.0010976	-0.83889	-0.00045033	536.8171164335496	126.61	0.78967	125.19	124.92	125.71	-1.4143					24	15	2	0	0	0	0.68021	1	12062	12062		36.447	2.5251	1	42983			57145	13140;5853	47144	47186	62521	62521					0.08463165446005405
TLDIGALSLGL	11	Unmodified	_TLDIGALSLGL_					0	0	0		ENST00000523182.5_1_8:37720415-37730726:-|nuORF;ENST00000522774.1_1_8:37728794-37730726:-|nuORF;nc|ENSG00000156675|Q6WKZ4-1|RAB11FIP1;ENSG00000156675|ENST00000330843|RAB11FIP1	ENST00000523182.5_1_8:37720415-37730726:-|nuORF;ENSG00000156675|ENST00000330843|RAB11FIP1	ENSG00000156675|ENST00000330843|RAB11FIP1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	536.816064	1071.61758	1.7528	0.00094092	1.0668	0.00057266	2.8195	0.0015136	536.8165920377487	125.57	0.36603	125.57	125.49	125.85	0	0.25436	0.0014963	NaN	36.447	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267860			57146	13140;5853	47144	47186							0.08463165446005405
TLDIGALSLGL	11	Unmodified	_TLDIGALSLGL_					0	0	0		ENST00000523182.5_1_8:37720415-37730726:-|nuORF;ENST00000522774.1_1_8:37728794-37730726:-|nuORF;nc|ENSG00000156675|Q6WKZ4-1|RAB11FIP1;ENSG00000156675|ENST00000330843|RAB11FIP1	ENST00000523182.5_1_8:37720415-37730726:-|nuORF;ENSG00000156675|ENST00000330843|RAB11FIP1	ENSG00000156675|ENST00000330843|RAB11FIP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	536.816064	1071.61758	-0.2529	-0.00013576	0.051994	2.7911E-05	-0.20091	-0.00010785	536.8158044602046	125.46	0.79263	125.23	125.01	125.8	-0.2359	-0.085209	0.00040681	NaN	36.447	29	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28463			57147	13140;5853	47144	47186							0.08463165446005405
TLDIGALSLGL	11	Unmodified	_TLDIGALSLGL_					0	0	0		ENST00000523182.5_1_8:37720415-37730726:-|nuORF;ENST00000522774.1_1_8:37728794-37730726:-|nuORF;nc|ENSG00000156675|Q6WKZ4-1|RAB11FIP1;ENSG00000156675|ENST00000330843|RAB11FIP1	ENST00000523182.5_1_8:37720415-37730726:-|nuORF;ENSG00000156675|ENST00000330843|RAB11FIP1	ENSG00000156675|ENST00000330843|RAB11FIP1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	536.816064	1071.61758	2.5008	0.0013425	-3.0206	-0.0016215	-0.51981	-0.00027904	536.8143924204865	126.34	0.84	125.26	124.92	125.76	-1.0715	-0.048483	-0.002892	NaN	36.447	27	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32112			57148	13140;5853	47144	47186							0.08463165446005405
TLDLLKAVE	9	Unmodified	_TLDLLKAVE_					0	0	0			REV__tr|A0A553SRM4|A0A553SRM4_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_01425PE=4SV=1	REV__tr|A0A553SRM4|A0A553SRM4_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_01425PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.3045959472656	2	501.297507	1000.58046	-0.65511	-0.0003284	0.55892	0.00028019	-0.096185	-4.8218E-05	501.2977185164396	98.341	0.56734	96.582	96.262	96.83	-1.7595					18	10	2	0	0	0	0.027462	1	6554	6554		27.882	0	1	107470	+		57149	30748	47145	47187	62522	62522					0.08019493900224006
TLDPKTAHPNL	11	Unmodified	_TLDPKTAHPNL_					0	0	0		nc|ENSG00000185880|Q86WT6-4|TRIM69;nc|ENSG00000185880|Q86WT6-3|TRIM69;nc|ENSG00000185880|Q86WT6-2|TRIM69;ENSG00000185880|ENST00000329464|TRIM69	nc|ENSG00000185880|Q86WT6-4|TRIM69	nc|ENSG00000185880|Q86WT6-4|TRIM69	MULTI-SECPEP	OvCa9_classI_Rep3	3	602.8748779296875	2	603.827495	1205.64044	2.2077	0.001333	1.2975	0.00078349	3.5052	0.0021165	603.8279810986762	104.38	1.2477	102.94	102.6	103.85	-1.4347					30	23	2	0	0	0	0.02523	1	7291	7291		42.864	0	1	62400			57150	8295	47146	47188	62523	62523					0.04584184563464078
TLDRIKSLNKP	11	Unmodified	_TLDRIKSLNKP_					0	0	0		tr|A0A7D7AC52|A0A7D7AC52_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17815PE=4SV=1	tr|A0A7D7AC52|A0A7D7AC52_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17815PE=4SV=1	tr|A0A7D7AC52|A0A7D7AC52_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17815PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	428.2185363769531	3	428.925988	1283.75613	-0.60168	-0.00025808	0.11514	4.9386E-05	-0.48654	-0.00020869	428.9258440531861	41.959	0.38989	41.959	41.766	42.156	0					11	8	2	0	0	0	0.025814	1	2670	2670		14.243	0	1	32114			57151	36222	47147	47189	62524	62524					0.12560708414321198
TLDSNQVSL	9	Unmodified	_TLDSNQVSL_					0	0	0		SSH2|p.P1093S|1|0.1|ENSG00000141298|chr17:29631836-29631836|G/A|missense_variant	SSH2|p.P1093S|1|0.1|ENSG00000141298|chr17:29631836-29631836|G/A|missense_variant	SSH2|p.P1093S|1|0.1|ENSG00000141298|chr17:29631836-29631836|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.2861022949219	2	488.750921	975.48729	1.9392	0.00094781	0.59695	0.00029176	2.5362	0.0012396	488.7500567651271	85.747	0.45169	85.747	85.502	85.954	0					34	10	4	0	0	0	0.02744	1	9022	9022		44.377	0	1	520980			57152	32922	47148	47190	62525	62525					-0.0014343055299832486
TLDSVVSKP	9	Unmodified	_TLDSVVSKP_					0	0	0			REV__ENST00000472045.1_1_5:131822508-131823888:-|nuORF	REV__ENST00000472045.1_1_5:131822508-131823888:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.7813415527344	2	473.266207	944.517862	-0.042152	-1.9949E-05	-0.15095	-7.1441E-05	-0.19311	-9.139E-05	473.26528611855224	60.419	0.28743	60.419	60.314	60.602	0					9	6	2	0	0	0	0.027462	1	5292	5292		14.865	0	1	95150	+		57153	26301	47149	47191	62526	62526					0.04338347832049294
TLDTVKSNRR	10	Unmodified	_TLDTVKSNRR_					0	0	0		ENST00000367434.4_1_1:193155235-193155340:-|nuORF	ENST00000367434.4_1_1:193155235-193155340:-|nuORF	ENST00000367434.4_1_1:193155235-193155340:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	595.337158203125	2	595.336018	1188.65748	-2.0554	-0.0012237	3.7417	0.0022276	1.6863	0.0010039	595.3381573566538	149.58	1.2857	148.14	147.64	148.93	-1.4344					61	25	3	0	0	0	0.69073	1	14768	14768		31.53	4.8369	1	176250			57154	10843	47150	47192	62527	62527					0.07070105169282215
TLDVIPHTA	9	Unmodified	_TLDVIPHTA_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.P9131Lfs*70|1|0.1|ENSG00000181143|chr19:8949378-8949379|-/CATCCTTCCACAA|frameshift_variant;MUC16|p.F9515*|1|0.24|ENSG00000181143|chr19:8948225-8948226|AA/-|frameshift_variant;MUC16|p.T9803Vfs*24|1|0.05|ENSG00000181143|chr19:8947363-8947364|-/GGAC|frameshift_variant;MUC16|p.D9802Vfs*25|1|0.05|ENSG00000181143|chr19:8947365-8947366|-/ATCAACAACACCCAACTGGGTAGAAA|frameshift_variant;MUC16|p.E8637Kfs*10|1|0.09|ENSG00000181143|chr19:8950858-8950861|TCTC/-|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	OvCa9_classI_Rep2	2	482.7847900390625	2	483.766374	965.518196	-1.4604	-0.00070647	-4.4723	-0.0021635	-5.9326	-0.00287	483.7641598277939	119.95	0.74062	119.78	119.55	120.29	-0.17137					22	14	2	0	0	0	0.027462	1	11536	11536		16.473	0	1	15228			57155	7920	47151	47193	62528	62528					0.03405767551896588
TLDVVAPGPP	10	Unmodified	_TLDVVAPGPP_					0	0	0			REV__ENSG00000198719|ENST00000366756|DLL1	REV__ENSG00000198719|ENST00000366756|DLL1	MULTI-SECPEP	OvCa9_classI_Rep2	2	482.2840881347656	2	483.26875	964.522947	1.5766	0.00076194	-3.066	-0.0014817	-1.4894	-0.00071978	483.26696369052786	89.147	0.64211	87.779	87.329	87.971	-1.3676					16	12	2	0	0	0	0.026871	1	7787	7787		29.15	0	1	17529	+		57156	23049	47152	47194	62529	62529					0.03926651694666816
TLDYEEQKL	9	Unmodified	_TLDYEEQKL_					0	0	0		LRP6|p.E1501Nfs*47|1|0.14|ENSG00000070018|chr12:12124611-12124611|C/-|frameshift_variant;ENSG00000070018|ENST00000261349|LRP6;LRP6|p.C603Sfs*12|1|0.05|ENSG00000070018|chr12:12164504-12164517|AGGTCTATAGAGGC/-|frameshift_variant;ENST00000545658.1_1_12:12339851-12356225:-|nuORF	LRP6|p.E1501Nfs*47|1|0.14|ENSG00000070018|chr12:12124611-12124611|C/-|frameshift_variant	LRP6|p.E1501Nfs*47|1|0.14|ENSG00000070018|chr12:12124611-12124611|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.81396484375	2	569.784961	1137.55537	-0.038915	-2.2173E-05	-1.9811	-0.0011288	-2.02	-0.001151	569.7834969641052	69.147	0.36801	69.147	68.939	69.307	0					14	8	2	0	0	0	0.027447	1	6558	6558		47.657	0	1	239460			57157	1415	47153	47195	62530	62530					-0.00790605692986901
TLEAFNKNI	9	Unmodified	_TLEAFNKNI_					0	0	0		tr|A0A7D7A069|A0A7D7A069_9CLOTArginine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=argSPE=3SV=1	tr|A0A7D7A069|A0A7D7A069_9CLOTArginine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=argSPE=3SV=1	tr|A0A7D7A069|A0A7D7A069_9CLOTArginine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=argSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.2979736328125	2	525.284931	1048.55531	0.56823	0.00029848	-0.051186	-2.6887E-05	0.51704	0.00027159	525.2845380496732	112.5	0.73975	112.38	111.98	112.72	-0.12174					23	14	2	0	0	0	0.027462	1	10620	10620		11.511	0	1	20970			57158	35987	47154	47196	62531	62531					0.032974390976505674
TLEAKTNQV	9	Unmodified	_TLEAKTNQV_					0	0	0			REV__nc|ENSG00000100503|Q8N4C6-6|NIN	REV__nc|ENSG00000100503|Q8N4C6-6|NIN	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.27606201171875	2	502.274564	1002.53457	-0.88603	-0.00044503	-0.11995	-6.0249E-05	-1.006	-0.00050528	502.2743814538115	79.525	1.6887	76.774	76.322	78.011	-2.7514					74	34	3	0	0	0	0.22621	1	6471	6471		71.877	14.066	1	1032500	+		57159	17423	47155	47197	62532	62532					0.033408487179940494
TLEALQTLL	9	Unmodified	_TLEALQTLL_					0	0	0		nc|ENSG00000184313|Q68CQ1-2|MROH7;nc|ENSG00000184313|Q68CQ1-1|MROH7;nc|ENSG00000184313|Q68CQ1-9|MROH7;ENSG00000184313|ENST00000421030|MROH7;ENST00000440217.5_1_1:55136488-55151982:+|nuORF;nc|ENSG00000184313|Q68CQ1-8|MROH7	nc|ENSG00000184313|Q68CQ1-2|MROH7	nc|ENSG00000184313|Q68CQ1-2|MROH7	MULTI-MSMS	OvCa99_classI_Rep5	1	501.29833984375	2	501.297507	1000.58046	1.3639	0.00068374	0.34988	0.00017539	1.7138	0.00085913	501.2974812271576	119.67	0.98784	119.67	119.24	120.23	0					56	23	4	0	0	0	0.12365	1	13734	13734		90.777	0.40684	1	2240300			57160	8145	47156	47198	62533	62533					0.08019493900224006
TLEALQTLL	9	Unmodified	_TLEALQTLL_					0	0	0		nc|ENSG00000184313|Q68CQ1-2|MROH7;nc|ENSG00000184313|Q68CQ1-1|MROH7;nc|ENSG00000184313|Q68CQ1-9|MROH7;ENSG00000184313|ENST00000421030|MROH7;ENST00000440217.5_1_1:55136488-55151982:+|nuORF;nc|ENSG00000184313|Q68CQ1-8|MROH7	nc|ENSG00000184313|Q68CQ1-2|MROH7	nc|ENSG00000184313|Q68CQ1-2|MROH7	MULTI-MSMS	OvCa9_classI_Rep3	3	501.29681396484375	2	501.297507	1000.58046	0.92487	0.00046364	-1.2706	-0.00063695	-0.34573	-0.00017331	501.2967802453463	121.12	2.2498	120.09	119.75	122	-1.0271					110	42	5	0	0	0	0.074342	6	9269	9253;9258;9263;9269;9275;9281		104.75	8.9314	1	667950			57161	8145	47156	47198	62534;62535;62536;62537;62538;62539	62537					0.08019493900224006
TLEITSPT	8	Unmodified	_TLEITSPT_					0	0	0		ENSG00000168386|ENST00000477258|FILIP1L;nc|ENSG00000168386|Q4L180-6|FILIP1L;nc|ENSG00000168386|Q4L180-5|FILIP1L;nc|ENSG00000168386|Q4L180-3|FILIP1L;nc|ENSG00000168386|Q4L180-7|FILIP1L;nc|ENSG00000168386|Q4L180-2|FILIP1L;nc|ENSG00000168386|Q4L180|FILIP1L;nc|ENSG00000118407|Q7Z7B0-3|FILIP1;nc|ENSG00000118407|Q7Z7B0-2|FILIP1;ENSG00000118407|ENST00000237172|FILIP1	ENSG00000168386|ENST00000477258|FILIP1L	ENSG00000168386|ENST00000477258|FILIP1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	432.2239074707031	2	431.231833	860.449113	-0.48424	-0.00020882	1.9324	0.0008333	1.4481	0.00062448	431.23255351142456	59.408	0.71917	59.408	59.083	59.802	0					32	18	2	0	0	0	0.028476	1	5126	5126		30.504	14.03	1	387400			57162	6898	47157	47199	62540	62540					0.013306835323305677
TLEKEGQVL	9	Unmodified	_TLEKEGQVL_					0	0	0		ENST00000563051.1_1_16:780419-781044:-|nuORF;nc|ENSG00000103245|Q9H6Q4-2|CIAO3;ENST00000564285.1_1_16:780419-782521:-|nuORF;nc|ENSG00000103245|Q9H6Q4-3|CIAO3;ENSG00000103245|ENST00000251588|CIAO3	ENST00000563051.1_1_16:780419-781044:-|nuORF	ENST00000563051.1_1_16:780419-781044:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	508.7861633300781	2	508.784764	1015.55498	-0.50601	-0.00025745	-0.27633	-0.00014059	-0.78234	-0.00039804	508.78461024196775	67.921	1.2496	67.921	67.566	68.815	0					79	28	5	0	0	0	0.28934	1	6422	6422		64.207	4.089	1	22094000			57163	2297	47158	47200	62541	62541					0.04782019377819324
TLEKLLERF	9	Unmodified	_TLEKLLERF_					0	0	0		ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	ENSG00000105877|ENST00000409508|DNAH11	MULTI-MSMS	OvCa9_classI_Rep4_	4	574.8384399414062	2	574.837331	1147.66011	-0.87533	-0.00050317	0.20724	0.00011913	-0.66808	-0.00038404	574.8373813616681	91.362	5.8049	88.819	88.449	94.254	-2.5425					226	116	5	0	0	0	0.44248	1	7921	7921		47.96	1.9873	1	3993100			57164	2511	47159	47201	62542	62542					0.09218560574208823
TLELEGNNL	9	Unmodified	_TLELEGNNL_					0	0	0		nc|ENSG00000106823|O94769-2|ECM2;ENSG00000106823|ENST00000344604|ECM2	nc|ENSG00000106823|O94769-2|ECM2	nc|ENSG00000106823|O94769-2|ECM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.7992858886719	2	501.758746	1001.50294	-0.68228	-0.00034234	-1.3337	-0.0006692	-2.016	-0.0010115	501.75812014642025	43.414	0.38062	43.414	43.227	43.608	0					15	8	2	0	0	0	0.027418	1	2839	2839		49.442	0	1	170660			57165	2576	47160	47202	62543	62543					0.002248559640406711
TLELREHQ	8	Unmodified	_TLELREHQ_					0	0	0			REV__ENSG00000177427|ENST00000323019|MIEF2	REV__ENSG00000177427|ENST00000323019|MIEF2	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.8163452148438	2	513.272355	1024.53016	-0.36484	-0.00018726	-4.3512	-0.0022333	-4.716	-0.0024206	513.2699046153425	75.654	0.30502	73.243	73.073	73.378	-2.4106					8	5	2	0	0	0	0.028476	1	3825	3825		34.173	8.5985	1	12062	+		57166	22005	47161	47203	62544	62544					0.018873842950824837
TLELSMQKN	9	Unmodified	_TLELSMQKN_					0	0	0		ENST00000394202.8_1_1:95367253-95367313:-|nuORF	ENST00000394202.8_1_1:95367253-95367313:-|nuORF	ENST00000394202.8_1_1:95367253-95367313:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.8005981445312	2	532.276249	1062.53795	-1.8197	-0.00096857	-1.4059	-0.00074835	-3.2256	-0.0017169	532.2755589761648	117.89	0.78866	116.55	116.31	117.1	-1.3444					17	14	2	0	0	0	0.027433	1	11085	11085		64.207	10.856	1	19295			57167	11261	47162	47204	62545	62545					0.00917775500352036
TLENGKQEL	9	Unmodified	_TLENGKQEL_					0	0	0			REV__GCC2|p.V645G|1|0.27|ENSG00000135968|chr2:108471263-108471263|T/G|missense_variant	REV__GCC2|p.V645G|1|0.27|ENSG00000135968|chr2:108471263-108471263|T/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	516.2725830078125	2	516.272021	1030.52949	0.78686	0.00040624	-0.93588	-0.00048317	-0.14902	-7.6932E-05	516.2714783528818	79.368	1.2589	77.029	76.754	78.013	-2.3399					69	24	4	0	0	0	0.16562	1	4297	4297		82.241	4.9229	1	908090	+		57168	28152	47163	47205	62546	62546					0.01544544855391905
TLENGKQEL	9	Unmodified	_TLENGKQEL_					0	0	0			REV__GCC2|p.V645G|1|0.27|ENSG00000135968|chr2:108471263-108471263|T/G|missense_variant	REV__GCC2|p.V645G|1|0.27|ENSG00000135968|chr2:108471263-108471263|T/G|missense_variant	MULTI-MATCH	OvCa99_classI_Rep5	1		2	516.272021	1030.52949	1.9258	0.00099426	-1.1076	-0.00057181	0.81826	0.00042245	516.2717046051631	77.105	0.37056	77.105	76.922	77.293	0	-0.0070854	-0.0003779	NaN	82.241	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183000	+		57169	28152	47163	47205							0.01544544855391905
TLERAAATA	9	Unmodified	_TLERAAATA_					0	0	0		tr|A0A7D6VPB3|A0A7D6VPB3_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22045PE=4SV=1	tr|A0A7D6VPB3|A0A7D6VPB3_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22045PE=4SV=1	tr|A0A7D6VPB3|A0A7D6VPB3_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22045PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	451.2591552734375	2	452.248349	902.482145	-0.19276	-8.7175E-05	0.66506	0.00030077	0.4723	0.0002136	452.2485858818631	54.569	0.76833	51.321	50.876	51.644	-3.2474					23	14	2	0	0	0	0.027461	1	3370	3370		25.574	0	1	45424			57170	34760	47164	47206	62547	62547					0.027003103750303126
TLERNLMNAS	10	Unmodified	_TLERNLMNAS_					0	0	0		ENSG00000223547|ENST00000439326|ZNF844	ENSG00000223547|ENST00000439326|ZNF844	ENSG00000223547|ENST00000439326|ZNF844	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.8118896484375	2	574.790055	1147.56556	-0.56971	-0.00032746	1.3891	0.00079845	0.8194	0.00047098	574.790839076089	29.643	0.64752	29.643	29.237	29.885	0					23	12	2	0	0	0	0.027028	1	1098	1098		24.519	0	1	59039			57171	9249	47165	47207	62548	62548					-0.002323212394003349
TLEVLAILL	9	Unmodified	_TLEVLAILL_					0	0	0		ENST00000585563.5_1_19:38798235-38806107:-|nuORF;nc|ENSG00000167645|Q5BJH7-2|YIF1B;nc|ENSG00000167645|Q5BJH7-4|YIF1B;nc|ENSG00000167645|Q5BJH7-5|YIF1B;nc|ENSG00000167645|Q5BJH7-6|YIF1B;nc|ENSG00000167645|Q5BJH7-3|YIF1B;ENSG00000167645|ENST00000339413|YIF1B;ENST00000589644.1_1_19:38798235-38799514:-|nuORF;ENST00000586319.5_1_19:38798235-38799736:-|nuORF	ENST00000585563.5_1_19:38798235-38806107:-|nuORF	ENST00000585563.5_1_19:38798235-38806107:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.7774658203125	2	492.820618	983.626684	-0.89739	-0.00044225	-2.1394	-0.0010543	-3.0368	-0.0014966	492.81942321993387	41.842	0.5185	41.842	41.637	42.156	0					23	11	3	0	0	0	0.027456	1	2640	2640		47.916	23.713	1	361260			57172	6822	47166	47208	62549	62549					0.13421558802315303
TLEVVRPKP	9	Unmodified	_TLEVVRPKP_					0	0	0		ENST00000435125.1_1_2:203385410-203385494:+|nuORF	ENST00000435125.1_1_2:203385410-203385494:+|nuORF	ENST00000435125.1_1_2:203385410-203385494:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3464965820312	2	519.818941	1037.62333	3.4921	0.0018153	-0.25595	-0.00013305	3.2362	0.0016822	519.8189418301022	131.78	1.8126	130.28	129.03	130.85	-1.5015					49	36	2	0	0	0	0.027455	1	12561	12561		42.396	10.441	1	21513			57173	11856	47167	47209	62550	62550					0.10602308748320866
TLEYSVALLM	10	Unmodified	_TLEYSVALLM_					0	0	0		nc|ENSG00000135931|Q7Z3E5-2|ARMC9;ENSG00000135931|ENST00000611582|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	nc|ENSG00000135931|Q7Z3E5-2|ARMC9	MULTI-MSMS	OvCa99_classI_Rep5	1	570.303466796875	2	570.304475	1138.5944	0.030612	1.7458E-05	-2.2539	-0.0012854	-2.2233	-0.0012679	570.3032126516264	31.438	1.1323	31.438	31.171	32.303	0					49	22	4	0	0	0	0.64063	1	1298	1298		37.159	0	1	180710			57174	4434	47168	47210	62551	62551					0.030644033369981116
TLFDQVLELL	10	Unmodified	_TLFDQVLELL_					0	0	0		VPS8|p.F862L|1|0.09|ENSG00000156931|chr3:184926605-184926605|C/G|missense_variant	VPS8|p.F862L|1|0.09|ENSG00000156931|chr3:184926605-184926605|C/G|missense_variant	VPS8|p.F862L|1|0.09|ENSG00000156931|chr3:184926605-184926605|C/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	595.2598876953125	2	595.836997	1189.65944	-0.079941	-4.7632E-05	-0.68225	-0.00040651	-0.76219	-0.00045414	595.8365302711604	123.71	2.0365	122.32	121.98	124.01	-1.3908					87	39	3	0	0	0	0.026802	1	11842	11842		51.335	17.414	1	81507			57175	36301	47169	47211	62552	62552					0.07219721134515567
TLFDYEVRL	9	Unmodified	_TLFDYEVRL_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-MSMS	OvCa99_classI_Rep5	1	578.3069458007812	2	578.305864	1154.59717	0.70028	0.00040498	1.0984	0.0006352	1.7987	0.0010402	578.3064437587619	123.78	1.6901	123.78	123.42	125.11	0					90	36	5	0	0	0	0.027568	3	14282	14258;14282;14306		138.06	61.288	1	6011100			57176	9576	47170	47212	62553;62554;62555	62554					0.02605994786199517
TLFDYEVRL	9	Unmodified	_TLFDYEVRL_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-MSMS	OvCa9_classI_Rep3	3	578.3052978515625	2	578.305864	1154.59717	0.5894	0.00034085	-0.45584	-0.00026362	0.13355	7.7233E-05	578.3054773383014	123.93	1.4527	122.89	122.56	124.02	-1.0377					66	27	3	0	0	0	0.1944	3	9601	9583;9601;9608		77.318	32.94	1	144130			57177	9576	47170	47212	62556;62557;62558	62557					0.02605994786199517
TLFDYEVRL	9	Unmodified	_TLFDYEVRL_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.3059692382812	2	578.305864	1154.59717	-1.4446	-0.0008354	1.655	0.00095708	0.2104	0.00012167	578.3066652659459	124.27	1.3391	122.88	122.57	123.91	-1.3908					63	25	3	0	0	0	0.3249	2	11770	11770;11779		60.118	19.34	1	138440			57178	9576	47170	47212	62559;62560	62559					0.02605994786199517
TLFDYEVRL	9	Unmodified	_TLFDYEVRL_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	578.305864	1154.59717	-0.46834	-0.00027084	0.54536	0.00031538	0.077017	4.4539E-05	578.3060069889151	123.21	1.0847	122.99	122.66	123.74	-0.21803	0.06782	0.00026595	NaN	77.318	53	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90676			57179	9576	47170	47212							0.02605994786199517
TLFDYEVRL	9	Unmodified	_TLFDYEVRL_					0	0	0		ENSG00000276043|ENST00000650932|UHRF1;nc|ENSG00000276043|Q96T88-2|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	ENSG00000276043|ENST00000650932|UHRF1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	578.305864	1154.59717	-0.25859	-0.00014954	0.48226	0.00027889	0.22367	0.00012935	578.3051466812911	124.16	0.49315	123.92	123.73	124.22	-0.23193	0.072812	-0.00069562	NaN	138.06	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11960			57180	9576	47170	47212							0.02605994786199517
TLFFILCRSVL	11	Unmodified	_TLFFILCRSVL_					0	0	0			REV__ENST00000541064.5_1_14:74946678-74946762:-|nuORF	REV__ENST00000541064.5_1_14:74946678-74946762:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	437.2746276855469	3	437.921298	1310.74206	0.082469	3.6115E-05	2.4119	0.0010562	2.4944	0.0010923	437.92203248244755	69.118	0.79736	66.498	66.068	66.865	-2.6203					20	15	2	0	0	0	0.026033	1	5430	5430		22.562	0	1	14287	+		57181	27361	47171	47213	62561	62561					0.09912339661673286
TLFFRHRI	8	Unmodified	_TLFFRHRI_					0	0	0		ENST00000329623.11_2_21:43321824-43325879:-|nuORF	ENST00000329623.11_2_21:43321824-43325879:-|nuORF	ENST00000329623.11_2_21:43321824-43325879:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	545.317138671875	2	545.319443	1088.62433	-1.9768	-0.001078	-3.1964	-0.0017431	-5.1732	-0.0028211	545.3174971514211	139.12	3.9663	138.06	135.98	139.95	-1.0595					186	80	3	0	0	0	0.74971	1	11480	11480		26.796	0	1	94142			57182	10430	47172	47214	62562	62562					0.08356567907890167
TLFGGKLMAY	10	Oxidation (M)	_TLFGGKLM(Oxidation (M))AY_		TLFGGKLM(1)AY		TLFGGKLM(55)AY	0	0	1		tr|A0A553SGE7|A0A553SGE7_NIACIAcyl-CoAthioesteraseOS=NialliacirculansOX=1397GN=CEQ21_10720PE=3SV=1	tr|A0A553SGE7|A0A553SGE7_NIACIAcyl-CoAthioesteraseOS=NialliacirculansOX=1397GN=CEQ21_10720PE=3SV=1	tr|A0A553SGE7|A0A553SGE7_NIACIAcyl-CoAthioesteraseOS=NialliacirculansOX=1397GN=CEQ21_10720PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	558.7890625	2	558.791535	1115.56852	1.0281	0.00057451	-3.9177	-0.0021892	-2.8896	-0.0016147	558.789100744105	125.18	1.1377	124.95	124.66	125.8	-0.2359					55	22	3	0	0	0	0.49558	1	12204	12204		54.776	15.523	1	105130			57183	33149	47173	47215	62563	62563		730			0.015355538854009865
TLFLLLPLSML	11	Unmodified	_TLFLLLPLSML_					0	0	0		ENSG00000213462|ENST00000394323|ERV3-1	ENSG00000213462|ENST00000394323|ERV3-1	ENSG00000213462|ENST00000394323|ERV3-1	MULTI-MSMS	OvCa9_classI_Rep2	2	420.9270324707031	3	420.926049	1259.75632	-0.40847	-0.00017194	3.3387	0.0014053	2.9302	0.0012334	420.92744774972056	69.031	2.0508	66.41	66.118	68.168	-2.6203					127	40	5	0	0	0	0.54114	1	5496	5496		50.034	1.432	1	1205300			57184	9130	47174	47216	62564	62564					0.13682992089957224
TLFLRPMEP	9	Unmodified	_TLFLRPMEP_					0	0	0			REV__ENST00000527357.5_1_11:801679-803120:-|nuORF	REV__ENST00000527357.5_1_11:801679-803120:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.2687377929688	2	552.299527	1102.5845	0.10051	5.551E-05	-4.2523	-0.0023485	-4.1518	-0.002293	552.7985457669694	75.313	1.4445	72.082	71.629	73.074	-3.2308					59	29	3	0	0	0	0.027462	1	5901	5901		7.1934	0.45781	1	184680	+		57185	22016	47175	47217	62565	62565					0.03731260122299318
TLFMEVMLP	9	Unmodified	_TLFMEVMLP_					0	0	0		DYSF|p.Y1602Pfs*2|1|0.24|ENSG00000135636|chr2:71660567-71660579|CTTACATCAAGAT/-|frameshift_variant;nc|ENSG00000135636|O75923-15|DYSF;nc|ENSG00000135636|O75923-3|DYSF;nc|ENSG00000135636|O75923-9|DYSF;nc|ENSG00000135636|O75923|DYSF;nc|ENSG00000135636|O75923-14|DYSF;nc|ENSG00000135636|O75923-6|DYSF;nc|ENSG00000135636|O75923-12|DYSF;nc|ENSG00000135636|O75923-5|DYSF;nc|ENSG00000135636|O75923-11|DYSF;nc|ENSG00000135636|O75923-4|DYSF;nc|ENSG00000135636|O75923-10|DYSF;nc|ENSG00000135636|O75923-2|DYSF;nc|ENSG00000135636|O75923-8|DYSF;nc|ENSG00000135636|O75923-7|DYSF;ENSG00000135636|ENST00000410020|DYSF	DYSF|p.Y1602Pfs*2|1|0.24|ENSG00000135636|chr2:71660567-71660579|CTTACATCAAGAT/-|frameshift_variant	DYSF|p.Y1602Pfs*2|1|0.24|ENSG00000135636|chr2:71660567-71660579|CTTACATCAAGAT/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	540.7760620117188	2	540.777039	1079.53953	2.3904	0.0012927	0.26586	0.00014377	2.6563	0.0014365	540.7770776939064	84.282	1.122	84.282	83.965	85.087	0					73	26	5	0	0	0	0.27546	1	8821	8821		65.803	9.0821	1	6972300			57186	770	47176	47218	62566	62566					0.002936932647571666
TLFNASQRI	9	Unmodified	_TLFNASQRI_					0	0	0		ENSG00000091136|ENST00000222399|LAMB1;ENST00000472714.1_1_7:107564398-107569844:-|nuORF	ENSG00000091136|ENST00000222399|LAMB1	ENSG00000091136|ENST00000222399|LAMB1	MULTI-MSMS	OvCa99_classI_Rep5	1	525.2882080078125	2	525.290548	1048.56654	-1.1322	-0.00059475	0.68523	0.00035994	-0.447	-0.00023481	525.2906973874739	49.996	0.78539	49.996	49.723	50.509	0					42	17	4	0	0	0	0.22621	1	3774	3774		71.877	14.066	1	1175700			57187	1865	47177	47219	62567	62567					0.044202611917853574
TLFPGKVHSL	10	Unmodified	_TLFPGKVHSL_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF;ENST00000489684.2_1_3:49044864-49050780:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MULTI-MSMS	OvCa99_classI_Rep5	1	549.8213500976562	2	549.818941	1097.62333	2.1128	0.0011617	-0.29452	-0.00016193	1.8183	0.00099974	549.8186620360713	76.105	1.1208	76.105	75.801	76.922	0					64	27	3	0	0	0	0.30325	1	7618	7618		80.455	1.0036	1	1708100			57188	7745	47178	47220	62568	62568					0.07842308748331561
TLFPLHEGEI	10	Unmodified	_TLFPLHEGEI_					0	0	0			REV__nc|ENSG00000138658|Q86YA3-3|ZGRF1	REV__nc|ENSG00000138658|Q86YA3-3|ZGRF1	MULTI-MSMS	OvCa9_classI_Rep3	3	578.3074340820312	2	578.305864	1154.59717	0.5894	0.00034085	-0.45584	-0.00026362	0.13355	7.7233E-05	578.3054773383014	123.93	1.4527	122.89	122.56	124.02	-1.0377					66	27	3	0	0	0	0.41408	2	9590	9590;9594		66.429	4.738	1	144130	+		57189	19556	47179	47221	62569;62570	62569					0.02605994786199517
TLFPSKIGV	9	Unmodified	_TLFPSKIGV_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	481.2905578613281	2	481.289485	960.564418	2.3982	0.0011542	-0.0058793	-2.8296E-06	2.3923	0.0011514	481.28928832665514	102.23	1.0671	102.23	101.87	102.93	0					57	24	4	0	0	0	0.3249	1	11375	11375		60.118	4.6141	1	4728200			57190	3052	47180	47222	62571	62571					0.08255832453994572
TLFPVRLLV	9	Unmodified	_TLFPVRLLV_					0	0	0		ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.3447265625	2	529.342052	1056.66955	0.86524	0.00045801	2.4618	0.0013032	3.3271	0.0017612	529.3427007082557	139.55	1.7094	139.55	139.22	140.93	0					119	35	5	0	0	0	0.22621	1	16299	16299		71.877	10.906	1	1514600			57191	5679	47181	47223	62572	62572					0.14348373650409485
TLFPVRLLV	9	Unmodified	_TLFPVRLLV_					0	0	0		ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	MULTI-MSMS	OvCa9_classI_Rep2	2	529.34228515625	2	529.342052	1056.66955	-1.2903	-0.00068304	1.8378	0.0009728	0.54741	0.00028977	529.342852686274	137.98	1.4177	137.76	137.44	138.86	-0.22696					43	28	2	0	0	0	0.56889	1	13745	13745		35.618	8.9254	1	35179			57192	5679	47181	47223	62573	62573					0.14348373650409485
TLFPVRLLV	9	Unmodified	_TLFPVRLLV_					0	0	0		ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	ENSG00000153395|ENST00000283415|LPCAT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.3435668945312	2	529.342052	1056.66955	0.34687	0.00018361	0.074595	3.9486E-05	0.42147	0.0002231	529.3419281598773	139.64	1.5853	138.15	137.78	139.37	-1.4952					72	30	3	0	0	0	0.44568	1	13640	13640		47.657	5.2612	1	57433			57193	5679	47181	47223	62574	62574					0.14348373650409485
TLFPWLHGPE	10	Unmodified	_TLFPWLHGPE_					0	0	0		ENST00000439057.5_1_1:44172836-44172971:-|nuORF	ENST00000439057.5_1_1:44172836-44172971:-|nuORF	ENST00000439057.5_1_1:44172836-44172971:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	598.8088989257812	2	598.808574	1195.60259	-0.27081	-0.00016216	0.46963	0.00028122	0.19882	0.00011906	598.8089070417255	110.82	1.5782	110.68	110.34	111.91	-0.13961					110	31	5	0	0	0	0.67931	1	10432	10432		32.812	1.2826	1	950560			57194	11906	47182	47224	62575	62575					0.01261718368664333
TLFQKATKI	9	Unmodified	_TLFQKATKI_					0	0	0		nc|ENSG00000143442|Q7Z3K3-5|POGZ;nc|ENSG00000143442|Q7Z3K3-7|POGZ;nc|ENSG00000143442|Q7Z3K3-2|POGZ;nc|ENSG00000143442|Q7Z3K3-3|POGZ;nc|ENSG00000143442|Q7Z3K3-6|POGZ;ENSG00000143442|ENST00000271715|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	nc|ENSG00000143442|Q7Z3K3-5|POGZ	MULTI-MSMS	OvCa99_classI_Rep5	1	525.3232421875	2	525.321317	1048.62808	-0.51644	-0.0002713	0.21009	0.00011036	-0.30636	-0.00016094	525.3213443384547	64.481	0.9399	64.481	64.21	65.15	0					56	22	4	0	0	0	0.17606	1	5870	5870		80.455	21.673	1	2238100			57195	5055	47183	47225	62576	62576					0.10571192891075043
TLFRDEEQP	9	Unmodified	_TLFRDEEQP_					0	0	0			REV__nc|ENSG00000196388|Q0VD86-2|INCA1	REV__nc|ENSG00000196388|Q0VD86-2|INCA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.8057861328125	2	567.774928	1133.5353	3.1193	0.001771	0.041884	2.3781E-05	3.1612	0.0017948	568.2763626397725	102.61	0.33925	102.61	102.42	102.76	0					10	7	2	0	0	0	0.027462	1	11444	11444		26.693	0	1	103280	+		57196	22820	47184	47226	62577	62577					-0.026123566329715686
TLFTPLFQL	9	Unmodified	_TLFTPLFQL_					0	0	0		ENST00000333039.2_2_22:39214748-39214886:-|nuORF	ENST00000333039.2_2_22:39214748-39214886:-|nuORF	ENST00000333039.2_2_22:39214748-39214886:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	540.310546875	2	540.310418	1078.60628	-0.46813	-0.00025294	-4.0337	-0.0021795	-4.5019	-0.0024324	540.3079523257699	67.783	1.1676	67.783	67.566	68.733	0					48	28	2	0	0	0	0.16562	1	6380	6380		82.241	8.0755	1	1712300			57197	10465	47185	47227	62578	62578					0.07012388142516102
TLFTVLSA	8	Unmodified	_TLFTVLSA_					0	0	0			REV__chr1:155064560-155066730|400|14.12|0.87|4.02|+|0|TE_info:MIRc,MIRc_dup6673,MIR,SINE,donor,+,155064436,155064560|None,EFNA4|2	REV__chr1:155064560-155066730|400|14.12|0.87|4.02|+|0|TE_info:MIRc,MIRc_dup6673,MIR,SINE,donor,+,155064436,155064560|None,EFNA4|2	MULTI-MSMS	OvCa9_classI_Rep2	2	426.2456970214844	2	426.247286	850.48002	-0.93249	-0.00039747	-2.0488	-0.0008733	-2.9813	-0.0012708	426.2463036759244	138.33	1.7168	138.1	137.59	139.3	-0.22696					83	34	3	0	0	0	0.75661	1	13804	13804		19.36	0	1	161940	+		57198	15804	47186	47228	62579	62579					0.048798816372254805
TLFVIFAVTD	10	Unmodified	_TLFVIFAVTD_					0	0	0			REV__nc|ENSG00000267795|K7EJ46|SMIM22	REV__nc|ENSG00000267795|K7EJ46|SMIM22	MULTI-SECPEP	OvCa9_classI_Rep2	2	563.792236328125	2	563.313158	1124.61176	-0.98229	-0.00055334	1.5653	0.00088175	0.583	0.00032841	563.3141335843792	63.663	0.628	60.919	60.427	61.055	-2.7444					18	11	2	0	0	0	0.027056	1	4800	4800		20.947	0	1	18924	+		57199	23592	47187	47229	62580	62580					0.054440669343193804
TLFYRLEI	8	Unmodified	_TLFYRLEI_					0	0	0		ENSG00000181458|ENST00000323523|TMEM45A	ENSG00000181458|ENST00000323523|TMEM45A	ENSG00000181458|ENST00000323523|TMEM45A	MULTI-MSMS	OvCa99_classI_Rep5	1	527.7993774414062	2	527.800217	1053.58588	1.483	0.00078275	0.77026	0.00040655	2.2533	0.0011893	527.8004333249929	138.14	1.4486	138.14	137.82	139.27	0					79	30	4	0	0	0	0.67872	1	16097	16097		47.657	1.7054	1	986900			57200	7932	47188	47230	62581	62581					0.06123217482695509
TLGAAVQPLL	10	Unmodified	_TLGAAVQPLL_					0	0	0		nc|ENSG00000183837|Q9UL41-2|PNMA3;ENSG00000183837|ENST00000593810|PNMA3	nc|ENSG00000183837|Q9UL41-2|PNMA3	nc|ENSG00000183837|Q9UL41-2|PNMA3	MULTI-MSMS	OvCa9_classI_Rep2	2	491.7999572753906	2	491.800217	981.585882	0.45767	0.00022508	-0.86132	-0.0004236	-0.40365	-0.00019852	491.7997614216502	106.26	3.1068	105.82	105.5	108.61	-0.43642					130	62	3	0	0	0	0.59317	1	9945	9945		42.864	0.46813	1	1827600			57201	8116	47189	47231	62582	62582					0.09435217482700864
TLGGHSFE	8	Unmodified	_TLGGHSFE_					0	0	0		ENSG00000156150|ENST00000647563|ALX3	ENSG00000156150|ENST00000647563|ALX3	ENSG00000156150|ENST00000647563|ALX3	MULTI-MSMS	OvCa9_classI_Rep2	2	424.1990661621094	2	424.200867	846.387182	1.0886	0.00046179	-2.5453	-0.0010797	-1.4567	-0.00061794	424.1996754803609	127.91	1.0856	127.68	127.39	128.48	-0.22697					46	21	3	0	0	0	0.74679	1	12535	12535		28.254	0	1	101840			57202	5822	47190	47232	62583	62583					-0.04215623096138188
TLGKEVLLL	9	Unmodified	_TLGKEVLLL_					0	0	0		ENSG00000086712|ENST00000380122|TXLNG	ENSG00000086712|ENST00000380122|TXLNG	ENSG00000086712|ENST00000380122|TXLNG	MULTI-MSMS	OvCa9_classI_Rep3	3	493.3193054199219	2	493.318243	984.621933	1.2328	0.00060816	-1.4512	-0.00071588	-0.21836	-0.00010772	493.3174202897749	124.35	2.0803	123.31	122.97	125.05	-1.0377					98	39	4	0	0	0	0.18193	1	9630	9630		79.451	2.6769	1	770890			57203	1753	47191	47233	62584	62584					0.12900674659567812
TLGKKALKYI	10	Unmodified	_TLGKKALKYI_					0	0	0			REV__ENST00000534329.1_1_11:17098694-17099257:-|nuORF	REV__ENST00000534329.1_1_11:17098694-17099257:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.2800903320312	2	567.865892	1133.71723	2.4385	0.0013848	-2.2769	-0.001293	0.16167	9.1805E-05	567.8651450503758	108.32	0.29871	108.32	108.07	108.37	0					15	6	3	0	0	0	0.02706	1	12226	12226		23.523	0	1	201320	+		57204	17997	47192	47234	62585	62585					0.15572027850612358
TLGLLLAVQ	9	Unmodified	_TLGLLLAVQ_					0	0	0			REV__ENST00000379619.5_1_2:28635833-28636109:+|nuORF	REV__ENST00000379619.5_1_2:28635833-28636109:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.2919921875	2	464.29731	926.580068	-0.66511	-0.00030881	0.30152	0.00014	-0.36359	-0.00016881	464.2973098133799	101.68	0.81569	99.416	99.16	99.976	-2.2665					23	15	2	0	0	0	0.027462	1	9113	9113		24.203	0	1	48061	+		57205	25162	47193	47235	62586	62586					0.1138411897103424
TLGPKKEI	8	Unmodified	_TLGPKKEI_					0	0	0		SRCAP|p.L2600Afs*30|1|0.06|ENSG00000080603|chr16:30737837-30737838|-/G|frameshift_variant;nc|ENSG00000080603|Q6ZRS2-3|SRCAP;nc|ENSG00000080603|Q6ZRS2-2|SRCAP;ENSG00000080603|ENST00000262518|SRCAP	SRCAP|p.L2600Afs*30|1|0.06|ENSG00000080603|chr16:30737837-30737838|-/G|frameshift_variant	SRCAP|p.L2600Afs*30|1|0.06|ENSG00000080603|chr16:30737837-30737838|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	443.2741394042969	2	443.273835	884.533118	1.1525	0.00051086	-4.3689	-0.0019366	-3.2165	-0.0014258	443.27180064343105	139.52	2.0991	138.02	137.22	139.32	-1.4952					91	40	3	0	0	0	0.7224	1	13573	13573		38.806	6.8513	1	858700			57206	1638	47194	47236	62587	62587					0.08623259419891838
TLGQWELVL	9	Unmodified	_TLGQWELVL_					0	0	0		sp|P16728|TRX2_HCMVATriplexcapsidprotein2OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRX2PE=1SV=1;sp|F5HIN9|TRX2_HCMVMTriplexcapsidprotein2OS=Humancytomegalovirus(strainMerlin)OX=295027GN=TRX2PE=3SV=1	sp|P16728|TRX2_HCMVATriplexcapsidprotein2OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRX2PE=1SV=1	sp|P16728|TRX2_HCMVATriplexcapsidprotein2OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRX2PE=1SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.797119140625	2	529.797675	1057.5808	-0.067477	-3.5749E-05	-1.8044	-0.00095598	-1.8719	-0.00099173	529.796535495674	101.77	1.0624	101.77	101.48	102.55	0					67	24	5	0	0	0	0.16562	1	11339	11339		82.241	2.7895	1	10929000			57207	32880	47195	47237	62588	62588					0.05430913620079991
TLGRARKQ	8	Unmodified	_TLGRARKQ_					0	0	0		ENSG00000174276|ENST00000310597|ZNHIT2	ENSG00000174276|ENST00000310597|ZNHIT2	ENSG00000174276|ENST00000310597|ZNHIT2	MULTI-MSMS	OvCa9_classI_Rep3	3	465.28509521484375	2	465.2856	928.556647	-2.7433	-0.0012764	2.5811	0.001201	-0.1622	-7.5468E-05	465.28670210862947	142.67	1.0374	141.66	141.38	142.42	-1.0106					57	20	4	0	0	0	0.74229	1	11859	11859		30.504	7.4612	1	145060			57208	7452	47196	47238	62589	62589					0.08951117977085232
TLGRDVEEL	9	Unmodified	_TLGRDVEEL_					0	0	0		ENST00000584205.5_1_17:17931933-17942433:-|nuORF	ENST00000584205.5_1_17:17931933-17942433:-|nuORF	ENST00000584205.5_1_17:17931933-17942433:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	516.2725219726562	2	516.272021	1030.52949	0.78686	0.00040624	-0.93588	-0.00048317	-0.14902	-7.6932E-05	516.2714783528818	79.368	1.2589	77.029	76.754	78.013	-2.3399					69	24	4	0	0	0	0.21231	1	4279	4279		74.255	0.28031	1	908090			57209	14016	47197	47239	62590	62590					0.01544544855391905
TLGRFMEDQE	10	Unmodified	_TLGRFMEDQE_					0	0	0			REV__ENST00000256654.8_1_20:25079983-25080256:+|nuORF	REV__ENST00000256654.8_1_20:25079983-25080256:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	613.8237915039062	2	613.27952	1224.54449	2.4027	0.0014735	-1.0036	-0.00061551	1.3991	0.00085802	613.2784097555801	84.805	0.33224	84.805	84.631	84.963	0					13	7	2	0	0	0	0.026782	1	8880	8880		17.468	0	1	175120	+		57210	23892	47198	47240	62591	62591					-0.058803313389034884
TLGRLPILPL	10	Unmodified	_TLGRLPILPL_					0	0	0			REV__tr|A0A7D6ZIW7|A0A7D6ZIW7_9CLOTLonproteaseOS=ClostridiumintestinaleOX=36845GN=lonPE=2SV=1	REV__tr|A0A7D6ZIW7|A0A7D6ZIW7_9CLOTLonproteaseOS=ClostridiumintestinaleOX=36845GN=lonPE=2SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	546.2847900390625	2	546.860609	1091.70667	-0.76421	-0.00041792	0.4179	0.00022854	-0.34631	-0.00018938	546.860963320163	133.17	0.93172	132.05	131.73	132.66	-1.1249					35	18	3	0	0	0	0.026782	1	10686	10686		45.972	11.8	1	36575	+		57211	32072	47199	47241	62592	62592					0.16448045196193561
TLGRLPILPL	10	Unmodified	_TLGRLPILPL_					0	0	0			REV__tr|A0A7D6ZIW7|A0A7D6ZIW7_9CLOTLonproteaseOS=ClostridiumintestinaleOX=36845GN=lonPE=2SV=1	REV__tr|A0A7D6ZIW7|A0A7D6ZIW7_9CLOTLonproteaseOS=ClostridiumintestinaleOX=36845GN=lonPE=2SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.85888671875	2	546.860609	1091.70667	3.1421	0.0017183	-3.7496	-0.0020505	-0.60758	-0.00033226	546.8585470426763	133.45	1.3764	131.93	131.61	132.98	-1.5257					58	25	3	0	0	0	0.41408	1	12877	12877		66.429	0	1	136520	+		57212	32072	47199	47241	62593	62593					0.16448045196193561
TLGTVLGLLF	10	Unmodified	_TLGTVLGLLF_					0	0	0			REV__nc|ENSG00000139508|Q7Z3Q1-3|SLC46A3	REV__nc|ENSG00000139508|Q7Z3Q1-3|SLC46A3	MULTI-MSMS	OvCa9_classI_Rep3	3	517.3187255859375	2	517.318243	1032.62193	1.1783	0.00060953	1.6312	0.00084385	2.8095	0.0014534	517.3188801990356	113.66	2.2198	112.59	112.25	114.47	-1.0753					98	43	4	0	0	0	0.37918	1	8383	8383		71.296	2.811	1	525200	+		57213	19614	47200	47242	62594	62594					0.10692674659549084
TLHGHWGLG	9	Unmodified	_TLHGHWGLG_					0	0	0		nc|ENSG00000204370|O14521-2|SDHD;ENSG00000204370|ENST00000375549|SDHD	nc|ENSG00000204370|O14521-2|SDHD	nc|ENSG00000204370|O14521-2|SDHD	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.2981872558594	2	489.251226	976.487899	-0.24539	-0.00012006	2.4721	0.0012095	2.2267	0.0010894	489.2523531448374	105.04	0.70005	105.04	104.74	105.44	0					24	15	2	0	0	0	0.027462	1	11840	11840		30.504	14.03	1	330390			57214	8975	47201	47243	62595	62595					-0.0012854632262815358
TLHGHWGLG	9	Unmodified	_TLHGHWGLG_					0	0	0		nc|ENSG00000204370|O14521-2|SDHD;ENSG00000204370|ENST00000375549|SDHD	nc|ENSG00000204370|O14521-2|SDHD	nc|ENSG00000204370|O14521-2|SDHD	MULTI-MATCH	OvCa9_classI_Rep3	3		2	489.251226	976.487899	0.036275	1.7748E-05	1.2086	0.00059129	1.2448	0.00060904	489.25159988449224	106.04	0.5226	104.69	104.35	104.87	-1.3482	-0.17162	-0.00079744	NaN	30.504	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18764			57215	8975	47201	47243							-0.0012854632262815358
TLHLLRPIP	9	Unmodified	_TLHLLRPIP_					0	0	0			REV__ENST00000399914.5_2_21:31312042-31312210:-|nuORF	REV__ENST00000399914.5_2_21:31312042-31312210:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.2772216796875	2	530.337301	1058.66005	-1.6126	-0.00085524	1.3269	0.00070368	-0.28578	-0.00015156	530.3377645021617	87.402	0.75584	84.775	84.349	85.105	-2.6269					18	14	2	0	0	0	0.027462	1	7378	7378		23.042	1.0826	1	19516	+		57216	25395	47202	47244	62596	62596					0.13306605364869029
TLHTVQKWL	9	Unmodified	_TLHTVQKWL_					0	0	0		TPP1|p.T193Lfs*3|1|0.04|ENSG00000166340|chr11:6617085-6617086|-/AG|frameshift_variant;ENST00000428886.6_1_11:6638445-6640631:-|nuORF;ENSG00000166340|ENST00000299427|TPP1	TPP1|p.T193Lfs*3|1|0.04|ENSG00000166340|chr11:6617085-6617086|-/AG|frameshift_variant	TPP1|p.T193Lfs*3|1|0.04|ENSG00000166340|chr11:6617085-6617086|-/AG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	563.319091796875	2	563.324391	1124.63423	-6.0709	-0.0034199	-3.7207	-0.0020959	-9.7915	-0.0055158	563.322073230946	155.76	0.93549	154.68	154.4	155.34	-1.073					61	26	3	0	0	0	0.60342	1	13404	13404		31.53	1.0262	1	103840			57217	6666	47203	47245	62597	62597					0.0768971112258896
TLHTVSIVVV	10	Unmodified	_TLHTVSIVVV_					0	0	0			REV__ENSG00000181023|ENST00000317121|OR56B1	REV__ENSG00000181023|ENST00000317121|OR56B1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.2605590820312	2	534.326599	1066.63865	-2.5301	-0.0013519	2.0538	0.0010974	-0.47626	-0.00025448	534.3275808481307	108.57	0.75999	106.84	106.62	107.38	-1.7256					28	14	3	0	0	0	0.026462	1	9917	9917		87.754	34.818	1	96635	+		57218	22214	47204	47246	62598	62598					0.10799175545503203
TLIAQGVNVN	10	Unmodified	_TLIAQGVNVN_					0	0	0		nc|ENSG00000165192|Q8WXH4-3|ASB11;ENSG00000165192|ENST00000480796|ASB11	nc|ENSG00000165192|Q8WXH4-3|ASB11	nc|ENSG00000165192|Q8WXH4-3|ASB11	MULTI-MSMS	OvCa9_classI_Rep3	3	514.7933959960938	2	514.790381	1027.56621	0.79788	0.00041074	2.2677	0.0011674	3.0656	0.0015781	514.7916392527665	118.94	2.1232	117.91	117.44	119.56	-1.0271					97	42	4	0	0	0	0.59703	1	9012	9012		42.396	0	1	128230			57219	6534	47205	47247	62599	62599					0.053528414719721695
TLIDLPGITKV	11	Unmodified	_TLIDLPGITKV_					0	0	0		nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3	nc|ENSG00000079805|P50570-3|DNM2	nc|ENSG00000079805|P50570-3|DNM2	MULTI-MSMS	OvCa9_classI_Rep4_	4	585.3596801757812	2	585.360639	1168.70673	-2.8233	-0.0016527	2.6303	0.0015397	-0.19299	-0.00011297	585.3620236959634	125.95	1.4725	124.53	124.19	125.66	-1.4143					77	29	4	0	0	0	0.1126	2	11966	11966;11975		94.409	39.633	1	183110			57220	1621	47206	47248	62600;62601	62600					0.12912000405481194
TLIDLPGITKV	11	Unmodified	_TLIDLPGITKV_					0	0	0		nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3	nc|ENSG00000079805|P50570-3|DNM2	nc|ENSG00000079805|P50570-3|DNM2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	585.360639	1168.70673	0.25083	0.00014682	-0.55446	-0.00032456	-0.30364	-0.00017774	585.3600936848217	124.85	1.186	124.62	124.32	125.5	-0.2359	0.031577	-0.0017598	NaN	94.409	65	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	148440			57221	1621	47206	47248							0.12912000405481194
TLIDLPGITKV	11	Unmodified	_TLIDLPGITKV_					0	0	0		nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3	nc|ENSG00000079805|P50570-3|DNM2	nc|ENSG00000079805|P50570-3|DNM2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	585.360639	1168.70673	0.12064	7.0616E-05	-0.10393	-6.0837E-05	0.016707	9.7798E-06	585.3603992913138	125.66	1.4589	124.61	124.26	125.72	-1.0519	0.021345	-0.0012324	NaN	94.409	73	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182970			57222	1621	47206	47248							0.12912000405481194
TLIDLPGITRV	11	Unmodified	_TLIDLPGITRV_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1;MX1|p.Y275Ifs*40|1|0.05|ENSG00000157601|chr21:41441807-41441808|-/ATAATGGGCCACACACAGTGGCTCAGTCCTA|frameshift_variant	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	OvCa99_classI_Rep5	1	599.3651733398438	2	599.363713	1196.71287	1.8059	0.0010824	-0.055675	-3.3369E-05	1.7502	0.001049	599.3637444670476	126.98	1.954	126.98	126.61	128.56	0					125	42	5	0	0	0	2.4534E-05	2	14686	14686;14711		183.72	0	1	8769800			57223	5904	47207	47249	62602;62603	62602					0.1223851863701384
TLIDLPGITRV	11	Unmodified	_TLIDLPGITRV_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1;MX1|p.Y275Ifs*40|1|0.05|ENSG00000157601|chr21:41441807-41441808|-/ATAATGGGCCACACACAGTGGCTCAGTCCTA|frameshift_variant	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	OvCa9_classI_Rep2	2	599.3632202148438	2	599.363713	1196.71287	0.19326	0.00011584	-0.44259	-0.00026527	-0.24933	-0.00014944	599.3633397307024	125.81	2.0749	125.57	125.26	127.33	-0.23589					117	41	4	0	0	0	0.04692	10	12285	12252;12257;12261;12267;12273;12279;12285;12291;12297;12304		136.99	0	1	494170			57224	5904	47207	47249	62604;62605;62606;62607;62608;62609;62610;62611;62612;62613	62610					0.1223851863701384
TLIDLPGITRV	11	Unmodified	_TLIDLPGITRV_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1;MX1|p.Y275Ifs*40|1|0.05|ENSG00000157601|chr21:41441807-41441808|-/ATAATGGGCCACACACAGTGGCTCAGTCCTA|frameshift_variant	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	OvCa9_classI_Rep3	3	599.3629760742188	2	599.363713	1196.71287	2.93	0.0017561	-3.0297	-0.0018159	-0.099762	-5.9794E-05	599.3618479044686	126.72	1.9135	125.64	125.23	127.14	-1.0715					100	36	4	0	0	0	0.00014243	12	9899	9882;9888;9894;9899;9905;9910;9917;9923;9929;9935;9941;9950		173.39	0	1	525550			57225	5904	47207	47249	62614;62615;62616;62617;62618;62619;62620;62621;62622;62623;62624;62625	62617					0.1223851863701384
TLIDLPGITRV	11	Unmodified	_TLIDLPGITRV_					0	0	0		ENSG00000157601|ENST00000398598|MX1;nc|ENSG00000157601|P20591-2|MX1;MX1|p.Y275Ifs*40|1|0.05|ENSG00000157601|chr21:41441807-41441808|-/ATAATGGGCCACACACAGTGGCTCAGTCCTA|frameshift_variant	ENSG00000157601|ENST00000398598|MX1	ENSG00000157601|ENST00000398598|MX1	MULTI-MSMS	OvCa9_classI_Rep4_	4	599.3617553710938	2	599.363713	1196.71287	-0.8905	-0.00053373	0.60003	0.00035964	-0.29046	-0.00017409	599.3639637949725	126.94	2.5197	125.51	125.15	127.67	-1.4357					139	49	5	0	0	0	0.055892	8	12113	12078;12090;12101;12113;12125;12137;12149;12162		112.11	0	1	531150			57226	5904	47207	47249	62626;62627;62628;62629;62630;62631;62632;62633	62629					0.1223851863701384
TLIEDILGV	9	Unmodified	_TLIEDILGV_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	OvCa99_classI_Rep5	1	486.785400390625	2	486.784233	971.553913	0.28879	0.00014058	-0.33957	-0.0001653	-0.050777	-2.4718E-05	486.78406354988493	162.5	0.25212	162.5	162.38	162.63	0					11	6	2	0	0	0	0.015253	1	19056	19056		152.63	75.787	1	794820			57227	2130	47208	47250	62634	62634					0.06699805008918247
TLIEDKAGW	9	Unmodified	_TLIEDKAGW_					0	0	0		ENST00000335281.8_1_14:52327279-52327504:+|nuORF	ENST00000335281.8_1_14:52327279-52327504:+|nuORF	ENST00000335281.8_1_14:52327279-52327504:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.3245849609375	2	516.771657	1031.52876	-0.43687	-0.00022576	-4.2551	-0.0021989	-4.6919	-0.0024247	517.2702270007651	84.259	0.66245	81.998	81.745	82.407	-2.261					17	13	2	0	0	0	0.027462	1	4886	4886		47.916	15.103	1	22304			57228	10493	47209	47251	62635	62635					0.014257502063401262
TLIEVSASMLF	11	Unmodified	_TLIEVSASMLF_					0	0	0		ASTN2|p.M1226I|1|0.07|ENSG00000148219|chr9:116440713-116440713|C/T|missense_variant	ASTN2|p.M1226I|1|0.07|ENSG00000148219|chr9:116440713-116440713|C/T|missense_variant	ASTN2|p.M1226I|1|0.07|ENSG00000148219|chr9:116440713-116440713|C/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	404.2193603515625	3	404.21778	1209.63151	3.2514	0.0013143	-0.098768	-3.9924E-05	3.1526	0.0012744	404.2178648039015	90.477	4.4615	90.477	90.186	94.648	0					287	107	5	0	0	0	0.69735	1	9773	9773		30.569	0	1	88373000			57229	124	47210	47252	62636	62636					0.035080748827795105
TLIGLKLHW	9	Unmodified	_TLIGLKLHW_					0	0	0			REV__COX4I2|p.Q168Tfs*?|1|0.05|ENSG00000131055|chr20:31644889-31644890|-/A|frameshift_variant	REV__COX4I2|p.Q168Tfs*?|1|0.05|ENSG00000131055|chr20:31644889-31644890|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.8322143554688	2	540.831852	1079.64915	-2.0025	-0.001083	1.179	0.00063766	-0.82347	-0.00044536	540.8325567076699	124.8	3.4681	123.41	123.02	126.49	-1.3908					189	68	4	0	0	0	0.62352	1	11881	11881		29.15	3.6994	1	9581200	+		57230	16228	47211	47253	62637	62637					0.11251202990615639
TLIGLSIKV	9	Unmodified	_TLIGLSIKV_					0	0	0		ENSG00000166595|ENST00000422424|CIAO2B;ENST00000562362.5_1_16:66966108-66968009:-|nuORF;ENST00000569299.1_1_16:66967504-66968009:-|nuORF	ENSG00000166595|ENST00000422424|CIAO2B	ENSG00000166595|ENST00000422424|CIAO2B	MULTI-MSMS	OvCa99_classI_Rep5	1	472.3149719238281	2	472.312961	942.611368	2.0308	0.00095917	0.45259	0.00021377	2.4834	0.0011729	472.3129931745495	116.58	1.2297	116.58	116.23	117.46	0					59	26	3	0	0	0	0.051592	3	13348	13322;13348;13372		117.81	38.098	1	1059500			57231	6696	47212	47254	62638;62639;62640	62639					0.13776692005137647
TLIIILNI	8	Unmodified	_TLIIILNI_					0	0	0			REV__ENSG00000137507|ENST00000260061|LRRC32	REV__ENSG00000137507|ENST00000260061|LRRC32	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.7680969238281	2	456.810054	911.605554	-0.44472	-0.00020315	2.4271	0.0011087	1.9824	0.00090556	456.8107128537811	67.964	0.31181	67.964	67.803	68.114	0					10	7	2	0	0	0	0.028476	1	6394	6394		26.796	0	1	120880	+		57232	19459	47213	47255	62641	62641					0.1462159349346166
TLIIRELMQ	9	Unmodified	_TLIIRELMQ_					0	0	0			REV__KIF4A|p.C1088Lfs*26|1|0.31|ENSG00000090889|chrX:70417891-70417892|-/C|frameshift_variant	REV__KIF4A|p.C1088Lfs*26|1|0.31|ENSG00000090889|chrX:70417891-70417892|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	558.82373046875	2	558.825909	1115.63727	0.74639	0.0004171	-3.8483	-0.0021505	-3.1019	-0.0017334	558.8236659810575	123.68	2.1192	123.45	122.89	125.01	-0.23193					85	36	4	0	0	0	0.51865	1	12030	12030		40.778	1.5253	1	148050	+		57233	17236	47214	47256	62642	62642					0.08407218185107013
TLILIRKL	8	Unmodified	_TLILIRKL_					0	0	0			REV__ENST00000497715.1_1_2:225344606-225344747:-|nuORF	REV__ENST00000497715.1_1_2:225344606-225344747:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.3149108886719	2	485.344595	968.674637	0.14512	7.0434E-05	3.2592	0.0015818	3.4044	0.0016523	485.3466394490586	62.399	0.28671	62.399	62.294	62.581	0					12	6	2	0	0	0	0.028476	1	5566	5566		8.2313	0	1	436610	+		57234	26784	47215	47257	62643	62643					0.18904677513046408
TLILLTNLL	9	Unmodified	_TLILLTNLL_					0	0	0		ENST00000525964.6_1_11:134022841-134052943:-|nuORF;ENSG00000151503|ENST00000534548|NCAPD3	ENST00000525964.6_1_11:134022841-134052943:-|nuORF	ENST00000525964.6_1_11:134022841-134052943:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	507.3350524902344	2	507.333893	1012.65323	1.0602	0.00053786	1.1777	0.00059746	2.2378	0.0011353	507.33433102823324	139.07	2.2902	139.07	138.69	140.98	0					125	47	4	0	0	0	0.094616	1	16217	16217		98.629	13.469	1	754840			57235	5561	47216	47258	62644	62644					0.14741247693655168
TLILPPAS	8	Unmodified	_TLILPPAS_					0	0	0			REV__ENSG00000171843|ENST00000380338|MLLT3	REV__ENSG00000171843|ENST00000380338|MLLT3	MULTI-MSMS	OvCa9_classI_Rep3	3	406.2480773925781	2	406.249829	810.485105	-1.2292	-0.00049936	-1.8965	-0.00077046	-3.1257	-0.0012698	406.24894809520566	140.8	1.576	139.77	139.38	140.96	-1.0339					88	31	4	0	0	0	0.73938	2	11622	11610;11622		31.955	2.1133	1	902300	+		57236	21651	47217	47259	62645;62646	62646					0.07228185499843676
TLILRQLHS	9	Unmodified	_TLILRQLHS_					0	0	0			REV__ENSG00000236699|ENST00000420470|ARHGEF38	REV__ENSG00000236699|ENST00000420470|ARHGEF38	MULTI-MSMS	OvCa9_classI_Rep2	2	540.8316040039062	2	540.82984	1079.64513	-0.46856	-0.00025341	3.3565	0.0018153	2.8879	0.0015619	540.8317360682152	123.45	3.5017	123.21	122.89	126.4	-0.23193					177	70	5	0	0	0	0.48047	2	11967	11967;12057		44.377	2.2742	1	7794400	+		57237	23414	47218	47260	62647;62648	62647					0.10849113496897189
TLILRQNHLAS	11	Unmodified	_TLILRQNHLAS_					0	0	0		ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	ENSG00000137462|ENST00000642700|TLR2	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3692626953125	2	633.369861	1264.72517	-4.8824	-0.0030923	3.9881	0.002526	-0.89421	-0.00056637	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.72064	1	13099	13099		22.58	1.7425	1	765700			57238	4585	47219	47261	62649	62649					0.10339555100085818
TLIPRIKN	8	Unmodified	_TLIPRIKN_					0	0	0		ENST00000392253.2_1_2:202275976-202276645:-|nuORF	ENST00000392253.2_1_2:202275976-202276645:-|nuORF	ENST00000392253.2_1_2:202275976-202276645:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	477.8091125488281	2	477.808377	953.6022	2.0965	0.0010017	1.8424	0.00088031	3.9389	0.0018821	477.8090798382224	125.72	1.4063	124.66	124.26	125.67	-1.0519					71	26	4	0	0	0	0.73626	1	9822	9822		33.516	0	1	261640			57239	11215	47220	47262	62650	62650					0.12354343439471904
TLIRGKIFF	9	Unmodified	_TLIRGKIFF_					0	0	0		ENST00000443217.5_1_3:187943241-188123900:+|nuORF	ENST00000443217.5_1_3:187943241-188123900:+|nuORF	ENST00000443217.5_1_3:187943241-188123900:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	547.8422241210938	2	547.839677	1093.6648	0.65277	0.00035761	3.8336	0.0021002	4.4864	0.0024578	547.8416503303802	71.419	3.1748	68.911	67.929	71.104	-2.5071					123	60	3	0	0	0	0.44294	1	5758	5758		47.916	1.9434	1	1272400			57240	11950	47221	47263	62651	62651					0.12171489507682054
TLIRHYLI	8	Unmodified	_TLIRHYLI_					0	0	0		nc|ENSG00000251369|Q7Z398-2|ZNF550;ENSG00000251369|ENST00000699333|ZNF550	nc|ENSG00000251369|Q7Z398-2|ZNF550	nc|ENSG00000251369|Q7Z398-2|ZNF550	MULTI-MSMS	OvCa99_classI_Rep5	1	514.8179931640625	2	514.816202	1027.61785	0.73083	0.00037624	1.8486	0.00095171	2.5795	0.001328	514.8169818525938	139.69	1.3181	139.69	139.41	140.73	0					62	27	3	0	0	0	0.53531	1	16301	16301		73.975	9.7675	1	347760			57241	9423	47222	47264	62652	62652					0.10514629956514909
TLIRNCDAE	9	Unmodified	_TLIRNCDAE_					0	0	0		ENSG00000144481|ENST00000324695|TRPM8;nc|ENSG00000144481|Q7Z2W7-2|TRPM8;nc|ENSG00000144481|Q7Z2W7-3|TRPM8	ENSG00000144481|ENST00000324695|TRPM8	ENSG00000144481|ENST00000324695|TRPM8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.7742309570312	2	517.750398	1033.48624	-1.5597	-0.00080752	-2.3476	-0.0012155	-3.9073	-0.002023	517.748986559046	72.593	1.3092	69.197	68.911	70.22	-3.3961					40	26	2	0	0	0	0.027455	1	5696	5696		42.396	0	1	209790			57242	5153	47223	47265	62653	62653					-0.02915968193565277
TLISDKWN	8	Unmodified	_TLISDKWN_					0	0	0			REV__nc|ENSG00000017260|P98194-2|ATP2C1	REV__nc|ENSG00000017260|P98194-2|ATP2C1	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.7601318359375	2	488.758549	975.502546	-0.34209	-0.0001672	1.002	0.00048973	0.6599	0.00032253	488.7589893675679	69.269	1.9571	65.787	65.221	67.178	-3.4812					98	39	4	0	0	0	0.60331	1	5164	5164		63.306	3.188	1	1253600	+		57243	16527	47224	47266	62654	62654					0.013814810348549145
TLISELVQA	9	Unmodified	_TLISELVQA_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	OvCa99_classI_Rep5	1	487.2832336425781	2	487.281857	972.549162	1.0386	0.00050611	1.0944	0.00053328	2.133	0.0010394	487.2822542159637	132.69	1.5469	132.69	132.36	133.91	0					74	32	4	0	0	0	0.018335	3	15428	15405;15428;15454		148.99	47.386	1	1424800			57244	1130	47225	47267	62655;62656;62657	62656					0.06178920866148019
TLISHSLPGIL	11	Unmodified	_TLISHSLPGIL_					0	0	0			REV__ENSG00000104356|ENST00000401707|POP1	REV__ENSG00000104356|ENST00000401707|POP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8424072265625	2	575.845156	1149.67576	-1.5734	-0.00090602	-1.7064	-0.00098265	-3.2798	-0.0018887	575.8439449675558	145.55	4.7888	144.12	142.78	147.57	-1.4357					360	93	6	0	0	0	0.69081	1	14148	14148		32.812	3.6629	1	565210	+		57245	17661	47226	47268	62658	62658					0.10690847091291289
TLISSNRDTP	10	Unmodified	_TLISSNRDTP_					0	0	0		ENST00000490738.5_1_1:6931897-6932053:+|nuORF	ENST00000490738.5_1_1:6931897-6932053:+|nuORF	ENST00000490738.5_1_1:6931897-6932053:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3182983398438	2	552.288202	1102.56185	-0.52878	-0.00029204	-0.28393	-0.00015681	-0.81271	-0.00044885	552.2878898131194	53.813	0.72907	53.813	53.564	54.293	0					37	17	3	0	0	0	0.026826	1	4266	4266		29.17	0	1	628480			57246	12703	47227	47269	62659	62659					0.014673322583803383
TLITVSHEEL	10	Unmodified	_TLITVSHEEL_					0	0	0		tr|A0A553SP83|A0A553SP83_NIACIPrimosomalproteinN'OS=NialliacirculansOX=1397GN=priAPE=3SV=1	tr|A0A553SP83|A0A553SP83_NIACIPrimosomalproteinN'OS=NialliacirculansOX=1397GN=priAPE=3SV=1	tr|A0A553SP83|A0A553SP83_NIACIPrimosomalproteinN'OS=NialliacirculansOX=1397GN=priAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	571.3109130859375	2	571.308603	1140.60265	-0.15853	-9.0569E-05	4.1331	0.0023613	3.9746	0.0022707	571.311240104566	116.45	2.5679	115.08	114.25	116.82	-1.3645					83	49	3	0	0	0	0.55359	1	10878	10878		47.657	6.8792	1	60917			57247	34015	47228	47270	62660	62660					0.037976735780148374
TLIVEGKSY	9	Unmodified	_TLIVEGKSY_					0	0	0		tr|A0A7D6VPP5|A0A7D6VPP5_9CLOTTATA-boxbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19475PE=4SV=1	tr|A0A7D6VPP5|A0A7D6VPP5_9CLOTTATA-boxbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19475PE=4SV=1	tr|A0A7D6VPP5|A0A7D6VPP5_9CLOTTATA-boxbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19475PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.27874755859375	2	505.281857	1008.54916	0.88889	0.00044914	2.9331	0.001482	3.822	0.0019312	505.28323933751034	90.968	0.39687	90.968	90.777	91.174	0					15	9	2	0	0	0	0.027462	1	9778	9778		35.618	4.0394	1	437840			57248	34785	47229	47271	62661	62661					0.0452292086615671
TLIYSFRSI	9	Unmodified	_TLIYSFRSI_					0	0	0		tr|A0A553SUL7|A0A553SUL7_NIACINa+/H+antiportersubunitDOS=NialliacirculansOX=1397GN=CEQ21_01815PE=3SV=1	tr|A0A553SUL7|A0A553SUL7_NIACINa+/H+antiportersubunitDOS=NialliacirculansOX=1397GN=CEQ21_01815PE=3SV=1	tr|A0A553SUL7|A0A553SUL7_NIACINa+/H+antiportersubunitDOS=NialliacirculansOX=1397GN=CEQ21_01815PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	550.3133544921875	2	550.310949	1098.60735	1.6984	0.00093464	0.19011	0.00010462	1.8885	0.0010393	550.3108062226269	120.14	0.90791	120.14	119.74	120.65	0					51	21	4	0	0	0	0.3076	1	13774	13774		62.107	3.3255	1	823950			57249	34621	47230	47272	62662	62662					0.06198602511426543
TLKAGRLVF	9	Unmodified	_TLKAGRLVF_					0	0	0			REV__SHANK2|p.A267Lfs*34|1|0.2|ENSG00000162105|chr11:70661600-70661600|G/-|frameshift_variant	REV__SHANK2|p.A267Lfs*34|1|0.2|ENSG00000162105|chr11:70661600-70661600|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	502.8135986328125	2	502.816202	1003.61785	-5.7843	-0.0029085	1.4056	0.00070674	-4.3788	-0.0022017	502.8168335130942	153.97	1.772	152.96	152.62	154.39	-1.0076					110	37	4	0	0	0	0.63422	1	13175	13175		27.882	3.6795	1	860080	+		57250	29358	47231	47273	62663	62663					0.11618629956512905
TLKASIGPL	9	Unmodified	_TLKASIGPL_					0	0	0			REV__nc|ENSG00000173715|Q8N6T0-5|TOP6BL	REV__nc|ENSG00000173715|Q8N6T0-5|TOP6BL	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.28216552734375	2	450.28166	898.548768	-0.47217	-0.00021261	0.10962	4.9361E-05	-0.36255	-0.00016325	450.2816255609477	71.832	1.9426	68.376	68.024	69.967	-3.4563					81	39	3	0	0	0	0.37135	2	5513	5495;5513		54.776	13.381	1	651380	+		57251	21797	47232	47274	62664;62665	62665					0.09543545936935516
TLKDAQKAQV	10	Unmodified	_TLKDAQKAQV_					0	0	0		ARHGAP31|p.H927Q|1|0.08|ENSG00000031081|chr3:119414710-119414710|C/G|missense_variant	ARHGAP31|p.H927Q|1|0.08|ENSG00000031081|chr3:119414710-119414710|C/G|missense_variant	ARHGAP31|p.H927Q|1|0.08|ENSG00000031081|chr3:119414710-119414710|C/G|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	551.3189086914062	2	551.316763	1100.61897	-0.73236	-0.00040376	0.088257	4.8657E-05	-0.64411	-0.00035511	551.3166644565686	49.312	0.6042	49.312	49.031	49.635	0					41	13	4	0	0	0	0.39172	1	3668	3668		69.628	0	1	1786500			57252	108	47233	47275	62666	62666					0.07268799534745085
TLKDISGFET	10	Unmodified	_TLKDISGFET_					0	0	0		nc|ENSG00000100483|Q9H867-2|VCPKMT;nc|ENSG00000100483|Q9H867-5|VCPKMT;ENSG00000100483|ENST00000395860|VCPKMT	nc|ENSG00000100483|Q9H867-2|VCPKMT	nc|ENSG00000100483|Q9H867-2|VCPKMT	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.8165283203125	2	555.787504	1109.56045	0.1805	0.00010032	1.832	0.0010182	2.0125	0.0011185	556.2904196091479	68.958	0.41074	68.958	68.774	69.184	0					15	9	2	0	0	0	0.026681	1	6533	6533		36.447	0	1	307090			57253	2075	47234	47276	62667	62667					0.010056981696379808
TLKDYKNT	8	Unmodified	_TLKDYKNT_					0	0	0		tr|A0A7D6VZ67|A0A7D6VZ67_9CLOTPenicillin-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18455PE=3SV=1	tr|A0A7D6VZ67|A0A7D6VZ67_9CLOTPenicillin-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18455PE=3SV=1	tr|A0A7D6VZ67|A0A7D6VZ67_9CLOTPenicillin-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18455PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.2991027832031	2	491.763832	981.513111	2.4988	0.0012288	-0.21441	-0.00010544	2.2844	0.0011234	491.76349648736084	89.272	1.1005	89.272	89.043	90.143	0					45	26	3	0	0	0	0.028476	1	9506	9506		30.318	0	1	913080			57254	35351	47235	47277	62668	62668					0.02161463689287757
TLKEDINKL	9	Unmodified	_TLKEDINKL_					0	0	0			REV__ENSG00000056050|ENST00000393381|HPF1	REV__ENSG00000056050|ENST00000393381|HPF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.8275756835938	2	537.313689	1072.61282	2.1052	0.0011311	1.4091	0.00075712	3.5143	0.0018883	537.3141779804987	77.345	0.54564	77.345	77.126	77.672	0					17	12	2	0	0	0	0.027426	1	7772	7772		73.975	22.639	1	165500	+		57255	16714	47236	47278	62669	62669					0.07942281303235177
TLKELHGLK	9	Unmodified	_TLKELHGLK_					0	0	0			REV__chr12:95859725-95861168|93|34.71|0.26|7.06|+|1|TE_info:L2c,L2c_dup105012,L2,LINE,donor,-,95859415,95859725|None,SNRPF|12	REV__chr12:95859725-95861168|93|34.71|0.26|7.06|+|1|TE_info:L2c,L2c_dup105012,L2,LINE,donor,-,95859415,95859725|None,SNRPF|12	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.7965087890625	2	519.818941	1037.62333	-1.0505	-0.00054609	-4.033	-0.0020964	-5.0836	-0.0026425	519.8166068115924	80.401	0.2925	77.69	77.566	77.858	-2.7106					6	5	2	0	0	0	0.027462	1	6583	6583		20.947	10.081	1	52903	+		57256	15896	47237	47279	62670	62670					0.10602308748298128
TLKEPPINQ	9	Unmodified	_TLKEPPINQ_					0	0	0			REV__tr|A0A553SS34|A0A553SS34_NIACIDinBfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_02350PE=4SV=1	REV__tr|A0A553SS34|A0A553SS34_NIACIDinBfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_02350PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.8770751953125	2	520.292756	1038.57096	0.85434	0.0004445	1.6705	0.00086917	2.5249	0.0013137	520.2933687642583	98.269	0.42757	98.269	98.079	98.506	0					10	9	2	0	0	0	0.027462	1	10795	10795		45.972	13.16	1	86777	+		57257	30798	47238	47280	62671	62671					0.05321725614680872
TLKFLKNNL	9	Unmodified	_TLKFLKNNL_					0	0	0			REV__HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|11|1|sense	REV__HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|11|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.3062744140625	2	545.834591	1089.65463	1.8673	0.0010193	0.6126	0.00033438	2.4799	0.0013536	545.8344986798082	108.62	0.30472	108.62	108.45	108.76	0					10	6	2	0	0	0	0.027462	1	12276	12276		42.396	9.5837	1	136770	+		57258	28277	47239	47281	62672	62672					0.11338881782398857
TLKILYKY	8	Unmodified	_TLKILYKY_					0	0	0		ENSG00000088256|ENST00000078429|GNA11	ENSG00000088256|ENST00000078429|GNA11	ENSG00000088256|ENST00000078429|GNA11	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.3048706054688	2	521.320786	1040.62702	-0.32983	-0.00017195	-3.6187	-0.0018865	-3.9486	-0.0020585	521.3188467831268	58.173	0.42336	58.173	57.899	58.322	0					13	9	2	0	0	0	0.028476	1	4906	4906		11.511	3.2797	1	270330			57259	1785	47240	47282	62673	62673					0.10832978522171288
TLKINMND	8	Unmodified	_TLKINMND_					0	0	0			REV__ENST00000471665.1_1_7:56150908-56151407:-|nuORF	REV__ENST00000471665.1_1_7:56150908-56151407:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.7857666015625	2	474.744585	947.474617	-0.45471	-0.00021587	0.56169	0.00026666	0.10697	5.0785E-05	474.74453928956797	51.809	0.20416	51.809	51.708	51.912	0					7	4	2	0	0	0	0.028476	1	4022	4022		9.7057	0	1	140700	+		57260	21019	47241	47283	62674	62674					-0.0012216521688515058
TLKKMKLEP	9	Unmodified	_TLKKMKLEP_					0	0	0		ENSG00000125755|ENST00000245934|SYMPK;SYMPK|p.I588Mfs*65|1|0.12|ENSG00000125755|chr19:45829191-45829192|-/TGTGTACACACTGCAGGCAGACTCAGGC|frameshift_variant;nc|ENSG00000125755|Q92797-2|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	ENSG00000125755|ENST00000245934|SYMPK	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.2774658203125	2	544.330827	1086.6471	0.90104	0.00049046	-1.6026	-0.00087237	-0.7016	-0.0003819	544.3281253765294	150.98	0.45192	150.98	150.74	151.2	0					16	8	3	0	0	0	0.027462	1	17685	17685		39.253	0	1	24678			57261	3733	47242	47284	62675	62675					0.10724406190479385
TLKKSLMRKY	10	Unmodified	_TLKKSLMRKY_					0	0	0			REV__ENST00000518683.5_1_8:87410815-87460532:+|nuORF	REV__ENST00000518683.5_1_8:87410815-87460532:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	634.880126953125	2	634.381383	1266.74821	-5.7659	-0.0036578	0.54015	0.00034266	-5.2257	-0.0033151	634.3814892688545	163.56	1.4089	163.33	162.75	164.16	-0.22696					114	47	3	0	0	0	0.81992	1	16708	16708		16.473	0.83134	1	320930	+		57262	18625	47243	47285	62676	62676					0.1255085789318855
TLKLGHNEI	9	Unmodified	_TLKLGHNEI_					0	0	0		nc|ENSG00000185792|Q7RTR0-2|NLRP9;ENSG00000185792|ENST00000332836|NLRP9	nc|ENSG00000185792|Q7RTR0-2|NLRP9	nc|ENSG00000185792|Q7RTR0-2|NLRP9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.3095703125	2	512.792924	1023.57129	-0.10256	-5.2594E-05	-0.63821	-0.00032727	-0.74077	-0.00037986	513.294447278528	78.298	0.38545	75.481	75.263	75.649	-2.8165					10	7	2	0	0	0	0.027411	1	6273	6273		54.776	0	1	31935			57263	8284	47244	47286	62677	62677					0.0604514533456495
TLKLHRRWSNF	11	Unmodified	_TLKLHRRWSNF_					0	0	0			REV__nc|ENSG00000215474|Q2VWA4-2|SKOR2	REV__nc|ENSG00000215474|Q2VWA4-2|SKOR2	MULTI-SECPEP	OvCa9_classI_Rep3	3	487.2828063964844	3	486.608993	1456.80515	-1.1525	-0.00056083	0.080944	3.9388E-05	-1.0716	-0.00052144	486.6090537267112	97.127	0.56434	95.368	95.157	95.722	-1.7595					17	10	2	0	0	0	0.026302	1	6451	6451		17.167	0	1	35580	+		57264	29133	47245	47287	62678	62678					0.0950204149394267
TLKPILDEI	9	Unmodified	_TLKPILDEI_					0	0	0		ENSG00000155903|ENST00000286364|RASA2;nc|ENSG00000155903|Q15283|RASA2	ENSG00000155903|ENST00000286364|RASA2	ENSG00000155903|ENST00000286364|RASA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.33642578125	2	521.313158	1040.61176	1.1799	0.00061511	2.974	0.0015504	4.1539	0.0021655	521.3148759655629	108.75	1.1375	108.75	108.45	109.59	0					37	25	2	0	0	0	0.027137	1	12367	12367		77.318	8.5308	1	436830			57265	5808	47246	47288	62679	62679					0.09308066934318049
TLKRRIRA	8	Unmodified	_TLKRRIRA_					0	0	0		ENSG00000167971|ENST00000343516|CASKIN1	ENSG00000167971|ENST00000343516|CASKIN1	ENSG00000167971|ENST00000343516|CASKIN1	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.3030700683594	2	507.338167	1012.66178	-0.060069	-3.0475E-05	1.5416	0.00078211	1.4815	0.00075163	507.3384480056818	96.917	0.19386	95.959	95.825	96.019	-0.95856					5	3	2	0	0	0	0.028476	1	8760	8760		7.1934	0.45781	1	4581.3			57266	6853	47247	47289	62680	62680					0.15595659173504828
TLKRSKKKS	9	Unmodified	_TLKRSKKKS_					0	0	0		tr|A0A7D7A4K2|A0A7D7A4K2_9CLOT6-phospho-beta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=ascBPE=3SV=1;tr|A0A7D6VU44|A0A7D6VU44_9CLOTFamily1glycosylhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11035PE=3SV=1	tr|A0A7D7A4K2|A0A7D7A4K2_9CLOT6-phospho-beta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=ascBPE=3SV=1	tr|A0A7D7A4K2|A0A7D7A4K2_9CLOT6-phospho-beta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=ascBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	538.352783203125	2	538.35094	1074.68733	1.9638	0.0010572	1.6366	0.00088108	3.6004	0.0019383	538.3516679385732	66.531	2.2143	63.585	63.265	65.479	-2.9459					98	43	3	0	0	0	0.37135	5	2756	2733;2742;2756;2767;2774		54.776	6.6056	1	167090			57267	35163	47248	47290	62681;62682;62683;62684;62685	62683					0.15297088905276723
TLKRSSITPFY	11	Unmodified	_TLKRSSITPFY_					0	0	0			REV__nc|ENSG00000221866|Q9HCM2-2|PLXNA4	REV__nc|ENSG00000221866|Q9HCM2-2|PLXNA4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	437.2602233886719	3	438.246839	1311.71869	-0.24383	-0.00010686	0.18367	8.0494E-05	-0.060163	-2.6366E-05	438.2467580163697	39.869	0.85521	36.915	36.566	37.421	-2.9541					33	16	3	0	0	0	0.026068	1	1713	1713		11.932	0	1	28300	+		57268	23344	47249	47291	62686	62686					0.07529617148702528
TLKSRKKSD	9	Unmodified	_TLKSRKKSD_					0	0	0		ENSG00000004766|ENST00000305866|VPS50;ENST00000441602.5_1_7:92883193-92979232:+|nuORF;nc|ENSG00000004766|Q96JG6-3|VPS50;ENST00000471188.5_1_7:92887656-92969983:+|nuORF	ENSG00000004766|ENST00000305866|VPS50	ENSG00000004766|ENST00000305866|VPS50	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8164672851562	2	531.81693	1061.61931	-1.6193	-0.00086116	1.5481	0.00082333	-0.071126	-3.7826E-05	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.69403	1	11321	11321		19.997	1.6724	1	178650			57269	831	47250	47292	62687	62687					0.09096219254638527
TLKYLVEQ	8	Unmodified	_TLKYLVEQ_					0	0	0			REV__ENSG00000176485|ENST00000415826|PLAAT3	REV__ENSG00000176485|ENST00000415826|PLAAT3	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.78857421875	2	497.2844	992.554247	0.10307	5.1253E-05	3.3101	0.0016461	3.4132	0.0016973	497.2840325212611	112.3	1.9661	110.78	110.21	112.18	-1.5111					120	38	5	0	0	0	0.65062	1	10389	10389		53.351	2.016	1	403480	+		57270	21954	47251	47293	62688	62688					0.05767224728754172
TLLCATVVQ	9	Unmodified	_TLLCATVVQ_					0	0	0			REV__ENSG00000169676|ENST00000304374|DRD5	REV__ENSG00000169676|ENST00000304374|DRD5	MULTI-SECPEP	OvCa9_classI_Rep2	2	474.9175109863281	2	474.265153	946.515753	-0.28895	-0.00013704	0.75272	0.00035699	0.46377	0.00021995	474.26506970424657	93.667	1.4326	92.568	92.174	93.606	-1.0995					53	27	3	0	0	0	0.027462	1	8353	8353		35.618	3.6634	1	181020	+		57271	21474	47252	47294	62689	62689					0.040355958225973154
TLLCELLHCV	10	Carbamidomethyl (C)	_TLLCELLHC(Carbamidomethyl (C))V_	TLLCELLHC(1)V		TLLC(-52)ELLHC(52)V		0	1	0			REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9	REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9	MULTI-MSMS	OvCa99_classI_Rep5	1	600.8114624023438	2	600.809402	1199.60425	0.94297	0.00056655	3.4693	0.0020844	4.4123	0.0026509	600.8112058136006	141.74	0.74873	141.74	141.39	142.14	0					30	14	3	0	0	0	0.43592	1	16565	16565		63.306	15.649	2	81286	+		57272	16315	47253	47295	62690	62690	185				0.012432680707433974
TLLDDNPK	8	Unmodified	_TLLDDNPK_					0	0	0		tr|A0A553SFT6|A0A553SFT6_NIACIYhgE/Pipdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09460PE=4SV=1	tr|A0A553SFT6|A0A553SFT6_NIACIYhgE/Pipdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09460PE=4SV=1	tr|A0A553SFT6|A0A553SFT6_NIACIYhgE/Pipdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09460PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.7777099609375	2	458.242732	914.470912	2.285	0.0010471	0.31838	0.0001459	2.6034	0.001193	458.2427223264964	82.445	0.51311	82.445	82.181	82.694	0					18	11	2	0	0	0	0.028476	1	8554	8554		31.955	19.748	1	457800			57273	33075	47254	47296	62691	62691					0.010254882809022092
TLLDRMVHL	9	Unmodified	_TLLDRMVHL_					0	0	0		ENST00000474543.5_1_20:57564608-57568882:+|nuORF;ENSG00000101158|ENST00000652272|NELFCD;nc|ENSG00000101158|Q8IXH7|NELFCD	ENST00000474543.5_1_20:57564608-57568882:+|nuORF	ENST00000474543.5_1_20:57564608-57568882:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	549.3123779296875	2	549.310426	1096.6063	0.58311	0.00032031	1.2175	0.00066879	1.8006	0.0009891	549.3109988266422	105.62	0.69771	105.62	105.36	106.05	0					34	15	3	0	0	0	0.2784	2	11864	11864;11886		65.465	15.929	1	1641600			57274	2143	47255	47297	62692;62693	62692					0.061860648708716326
TLLDSTWNL	9	Unmodified	_TLLDSTWNL_					0	0	0		nc|ENSG00000122642|O95302-2|FKBP9;ENSG00000122642|ENST00000242209|FKBP9;nc|ENSG00000122642|O95302-3|FKBP9	nc|ENSG00000122642|O95302-2|FKBP9	nc|ENSG00000122642|O95302-2|FKBP9	MULTI-MSMS	OvCa99_classI_Rep5	1	531.7781372070312	2	531.776939	1061.53933	1.2783	0.00067976	0.68715	0.00036541	1.9654	0.0010452	531.777240189296	143.88	1.6695	143.88	143.41	145.08	0					88	33	4	0	0	0	0.0094524	3	16819	16799;16819;16843		171.38	69.784	1	1483400			57275	3544	47256	47298	62694;62695;62696	62695					0.011017328607522359
TLLEAEEQEL	10	Unmodified	_TLLEAEEQEL_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400	REV__nc|ENSG00000183495|Q96L91-4|EP400	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.2250366210938	2	587.795526	1173.5765	2.7018	0.0015881	0.52403	0.00030802	3.2258	0.0018961	587.7952831438212	115.92	0.46494	115.92	115.58	116.05	0					13	9	2	0	0	0	0.02658	1	13256	13256		54.776	1.8396	1	142950	+		57276	22365	47257	47299	62697	62697					-0.0033464038413058006
TLLEAEEQEL	10	Unmodified	_TLLEAEEQEL_					0	0	0			REV__nc|ENSG00000183495|Q96L91-4|EP400	REV__nc|ENSG00000183495|Q96L91-4|EP400	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	587.795526	1173.5765	-0.91967	-0.00054058	-6.2253	-0.0036592	-7.145	-0.0041998	587.792210300246	117.59	0.47276	116.24	116.1	116.58	-1.3444	0.16201	-0.0031876	NaN	54.776	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16118	+		57277	22365	47257	47299							-0.0033464038413058006
TLLEEIKAL	9	Unmodified	_TLLEEIKAL_					0	0	0		nc|ENSG00000167549|Q6QEF8-4|CORO6;ENST00000469090.5_1_17:27942752-27944334:-|nuORF;nc|ENSG00000167549|Q6QEF8-3|CORO6;nc|ENSG00000167549|Q6QEF8-2|CORO6;ENST00000459686.5_1_17:27942752-27944279:-|nuORF;ENST00000579388.5_1_17:27942752-27944279:-|nuORF;nc|ENSG00000167549|Q6QEF8|CORO6;ENSG00000167549|ENST00000388767|CORO6	nc|ENSG00000167549|Q6QEF8-4|CORO6	nc|ENSG00000167549|Q6QEF8-4|CORO6	MULTI-MSMS	OvCa99_classI_Rep5	1	515.3137817382812	2	515.313158	1028.61176	1.4386	0.00074134	0.36395	0.00018755	1.8026	0.00092889	515.3132035471463	122.79	0.64694	122.79	122.58	123.23	0					31	13	3	0	0	0	0.14855	2	14140	14140;14170		85.161	0	1	258590			57278	6803	47258	47300	62698;62699	62698					0.098600669343341
TLLEEIKAL	9	Unmodified	_TLLEEIKAL_					0	0	0		nc|ENSG00000167549|Q6QEF8-4|CORO6;ENST00000469090.5_1_17:27942752-27944334:-|nuORF;nc|ENSG00000167549|Q6QEF8-3|CORO6;nc|ENSG00000167549|Q6QEF8-2|CORO6;ENST00000459686.5_1_17:27942752-27944279:-|nuORF;ENST00000579388.5_1_17:27942752-27944279:-|nuORF;nc|ENSG00000167549|Q6QEF8|CORO6;ENSG00000167549|ENST00000388767|CORO6	nc|ENSG00000167549|Q6QEF8-4|CORO6	nc|ENSG00000167549|Q6QEF8-4|CORO6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.313158	1028.61176	0.12526	6.4547E-05	1.3972	0.00072001	1.5225	0.00078456	515.8158607540757	123.17	0.39615	122.96	122.66	123.06	-0.21803	0.042702	0.00083805	NaN	85.161	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13794			57279	6803	47258	47300							0.098600669343341
TLLEEIKAL	9	Unmodified	_TLLEEIKAL_					0	0	0		nc|ENSG00000167549|Q6QEF8-4|CORO6;ENST00000469090.5_1_17:27942752-27944334:-|nuORF;nc|ENSG00000167549|Q6QEF8-3|CORO6;nc|ENSG00000167549|Q6QEF8-2|CORO6;ENST00000459686.5_1_17:27942752-27944279:-|nuORF;ENST00000579388.5_1_17:27942752-27944279:-|nuORF;nc|ENSG00000167549|Q6QEF8|CORO6;ENSG00000167549|ENST00000388767|CORO6	nc|ENSG00000167549|Q6QEF8-4|CORO6	nc|ENSG00000167549|Q6QEF8-4|CORO6	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	515.313158	1028.61176	-1.0124	-0.00052171	3.051	0.0015722	2.0386	0.0010505	515.312982657247	124.39	0.40967	123	122.72	123.13	-1.3908	0.082236	0.0025425	NaN	85.161	16	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19768			57280	6803	47258	47300							0.098600669343341
TLLEQNRDV	9	Unmodified	_TLLEQNRDV_					0	0	0			REV__ENST00000402746.5_1_7:2260573-2272521:-|nuORF	REV__ENST00000402746.5_1_7:2260573-2272521:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.2699584960938	2	544.290745	1086.56694	-0.49172	-0.00026764	-1.7979	-0.00097857	-2.2896	-0.0012462	544.289925911436	48.419	0.90662	48.419	47.724	48.63	0					35	20	2	0	0	0	0.027459	1	3535	3535		52.937	0	1	784660	+		57281	16367	47259	47301	62700	62700					0.027116361209891693
TLLEYMLI	8	Unmodified	_TLLEYMLI_					0	0	0			REV__nc|ENSG00000185532|Q13976-3|PRKG1	REV__nc|ENSG00000185532|Q13976-3|PRKG1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.2815246582031	2	498.277729	994.540905	3.4549	0.0017215	4.1533	0.0020695	7.6081	0.003791	498.27969539761534	133.03	1.2718	131.52	131.13	132.4	-1.5114					73	25	4	0	0	0	0.44269	1	12805	12805		83.287	5.3433	1	540930	+		57282	22512	47260	47302	62701	62701					0.04341650625178772
TLLFLFLPT	9	Unmodified	_TLLFLFLPT_					0	0	0			REV__nc|ENSG00000211652|P04211|IGLV7-43	REV__nc|ENSG00000211652|P04211|IGLV7-43	MULTI-SECPEP	OvCa9_classI_Rep2	2	533.3470458984375	2	532.823161	1063.63177	-1.001	-0.00053337	-2.8768	-0.0015328	-3.8778	-0.0020662	532.8213783384623	93.302	1.0373	92.134	91.904	92.942	-1.168					27	19	3	0	0	0	0.027462	1	8298	8298		30.504	0	1	53543	+		57283	29110	47261	47303	62702	62702					0.10249862664932152
TLLFPVVLVV	10	Unmodified	_TLLFPVVLVV_					0	0	0		ENST00000426647.2_1_7:32852458-32867019:+|nuORF	ENST00000426647.2_1_7:32852458-32867019:+|nuORF	ENST00000426647.2_1_7:32852458-32867019:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3182983398438	2	550.359911	1098.70527	-0.68387	-0.00037638	-4.3958	-0.0024193	-5.0797	-0.0027957	550.357311060613	53.79	0.57972	53.79	53.389	53.969	0					21	13	2	0	0	0	0.026871	1	4266	4266		29.15	10.046	1	290690			57284	11742	47262	47304	62703	62703					0.15986411107428466
TLLGHEFVL	9	Unmodified	_TLLGHEFVL_					0	0	0		ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENST00000425026.1_1_Y:10028050-10028227:-|nuORF	ENSG00000004897|ENST00000066544|CDC27	ENSG00000004897|ENST00000066544|CDC27	MULTI-MSMS	OvCa9_classI_Rep2	2	514.7930908203125	2	514.792392	1027.57023	-1.2306	-0.00063352	0.33986	0.00017496	-0.89078	-0.00045857	514.7926768309699	117.99	1.8353	117.84	117.39	119.22	-0.14755					94	36	4	0	0	0	0.59983	1	11311	11311		31.955	0	1	124280			57285	837	47263	47305	62704	62704					0.057549309656678815
TLLGHEFVL	9	Unmodified	_TLLGHEFVL_					0	0	0		ENSG00000004897|ENST00000066544|CDC27;nc|ENSG00000004897|P30260-2|CDC27;ENST00000533415.5_1_17:45198303-45266605:-|nuORF;ENST00000425026.1_1_Y:10028050-10028227:-|nuORF	ENSG00000004897|ENST00000066544|CDC27	ENSG00000004897|ENST00000066544|CDC27	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.7920532226562	2	514.792392	1027.57023	-1.6634	-0.0008563	0.93657	0.00048214	-0.72683	-0.00037417	514.7929620525371	119.13	1.9291	117.78	117.36	119.29	-1.3444					96	36	4	0	0	0	0.53957	1	11213	11213		38.806	1.647	1	154940			57286	837	47263	47305	62705	62705					0.057549309656678815
TLLHFLAEL	9	Unmodified	_TLLHFLAEL_					0	0	0		ENSG00000131504|ENST00000389054|DIAPH1;nc|ENSG00000131504|O60610-3|DIAPH1;nc|ENSG00000131504|O60610-2|DIAPH1	ENSG00000131504|ENST00000389054|DIAPH1	ENSG00000131504|ENST00000389054|DIAPH1	MULTI-MSMS	OvCa99_classI_Rep5	1	528.8099365234375	2	528.808042	1055.60153	1.1404	0.00060305	1.6807	0.00088878	2.8211	0.0014918	528.8088604074385	144.28	0.49432	144.28	143.91	144.4	0					15	9	2	0	0	0	0.29717	1	16857	16857		63.306	5.495	1	234010			57287	4073	47264	47306	62706	62706					0.07595503999755238
TLLIKQQF	8	Unmodified	_TLLIKQQF_					0	0	0			REV__nc|ENSG00000126337|O76013-2|KRT36	REV__nc|ENSG00000126337|O76013-2|KRT36	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.8019104003906	2	495.80276	989.590967	2.7675	0.0013721	-3.2389	-0.0016058	-0.47141	-0.00023372	495.8010455800342	130.6	2.8271	129.13	127.57	130.4	-1.4779					94	57	3	0	0	0	0.75208	1	12554	12554		17.365	0	1	84961	+	+	57288	16182	47265	47307	62707	62707					0.09575521345323068
TLLIPQAIF	9	Unmodified	_TLLIPQAIF_					0	0	0		tr|A0A7D7AHI5|A0A7D7AHI5_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14900PE=3SV=1	tr|A0A7D7AHI5|A0A7D7AHI5_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14900PE=3SV=1	tr|A0A7D7AHI5|A0A7D7AHI5_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14900PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.2644348144531	2	508.312961	1014.61137	0.021836	1.11E-05	-3.123	-0.0015875	-3.1012	-0.0015764	508.3113466168203	60.884	0.42562	60.884	60.646	61.071	0					12	9	2	0	0	0	0.027462	1	5334	5334		21.96	0	1	103260			57289	36274	47266	47308	62708	62708					0.10464692005120924
TLLIRETE	8	Unmodified	_TLLIRETE_					0	0	0			REV__nc|ENSG00000144674|Q13439-3|GOLGA4	REV__nc|ENSG00000144674|Q13439-3|GOLGA4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.8150329589844	2	487.779482	973.544411	0.19928	9.7206E-05	-0.42046	-0.00020509	-0.22117	-0.00010788	487.779298200895	57.395	0.76516	54.05	53.628	54.393	-3.3449					29	14	3	0	0	0	0.028476	1	3764	3764		32.812	0	1	64663	+		57290	19927	47267	47309	62709	62709					0.05658036723366422
TLLKALLEI	9	Unmodified	_TLLKALLEI_					0	0	0		ENSG00000131203|ENST00000518237|IDO1;ENST00000521480.1_1_8:39780074-39781137:+|nuORF;ENST00000253513.11_1_8:39780074-39782780:+|nuORF	ENSG00000131203|ENST00000518237|IDO1	ENSG00000131203|ENST00000518237|IDO1	MULTI-MSMS	OvCa99_classI_Rep5	1	507.33514404296875	2	507.333893	1012.65323	1.0602	0.00053786	1.1777	0.00059746	2.2378	0.0011353	507.33433102823324	139.07	2.2902	139.07	138.69	140.98	0					125	47	4	0	0	0	0.051592	3	16239	16239;16287;16313		117.81	27.441	1	754840			57291	4049	47268	47310	62710;62711;62712	62710					0.14741247693655168
TLLKEAIHR	9	Unmodified	_TLLKEAIHR_					0	0	0		ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	ENSG00000159399|ENST00000290573|HK2	MULTI-MSMS	OvCa9_classI_Rep3	3	540.8311767578125	2	540.82984	1079.64513	2.013	0.0010887	0.75549	0.00040859	2.7684	0.0014973	540.8302826822948	124.41	3.5435	123.37	123.03	126.57	-1.0377					194	67	5	0	0	0	0.49652	2	9623	9623;9677		42.864	6.4175	1	8697600			57292	6009	47269	47311	62713;62714	62713					0.10849113496897189
TLLKQLPCI	9	Unmodified	_TLLKQLPCI_					0	0	0		nc|ENSG00000118200|Q08AD1-2|CAMSAP2;ENSG00000118200|ENST00000358823|CAMSAP2;nc|ENSG00000118200|Q08AD1|CAMSAP2	nc|ENSG00000118200|Q08AD1-2|CAMSAP2	nc|ENSG00000118200|Q08AD1-2|CAMSAP2	MULTI-MSMS	OvCa99_classI_Rep5	1	514.8135375976562	2	514.81227	1027.60999	-0.39065	-0.00020111	-0.4978	-0.00025627	-0.88845	-0.00045739	514.8115920364356	103.44	1.0084	103.44	103.01	104.02	0					64	23	5	0	0	0	0.22621	1	11576	11576		71.877	0	1	2059000			57293	3294	47270	47312	62715	62715					0.0972873464472741
TLLKRLLAV	9	Unmodified	_TLLKRLLAV_					0	0	0			REV__nc|ENSG00000152953|Q9NY57-2|STK32B	REV__nc|ENSG00000152953|Q9NY57-2|STK32B	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.8330078125	2	513.855327	1025.6961	2.6886	0.0013816	0.30107	0.0001547	2.9897	0.0015363	514.3571509825684	97.265	0.21768	97.265	97.18	97.397	0					5	4	2	0	0	0	0.027462	1	10680	10680		42.396	14.514	1	43486	+		57294	20313	47271	47313	62716	62716					0.18428062541738655
TLLKTLAELYT	11	Unmodified	_TLLKTLAELYT_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3699340820312	2	633.371204	1264.72785	-4.5141	-0.0028591	1.3189	0.00083537	-3.1952	-0.0020238	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.72473	1	15749	15749		19.104	4.2386	1	369460			57295	889	47272	47314	62717	62717					0.10607965714393686
TLLKTLAELYT	11	Unmodified	_TLLKTLAELYT_					0	0	0		nc|ENSG00000006715|P49754-2|VPS41;nc|ENSG00000006715|P49754-3|VPS41;ENSG00000006715|ENST00000310301|VPS41	nc|ENSG00000006715|P49754-2|VPS41	nc|ENSG00000006715|P49754-2|VPS41	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3701782226562	2	633.371204	1264.72785	-4.8823	-0.0030923	1.8683	0.0011833	-3.0141	-0.001909	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.70865	1	13151	13151		26.693	6.6961	1	765700			57296	889	47272	47314	62718	62718					0.10607965714393686
TLLLCLSNL	9	Unmodified	_TLLLCLSNL_					0	0	0		ENSG00000137103|ENST00000643932|TMEM8B;nc|ENSG00000137103|A6NDV4-3|TMEM8B;nc|ENSG00000137103|A6NDV4-2|TMEM8B;nc|ENSG00000137103|A6NDV4|TMEM8B	ENSG00000137103|ENST00000643932|TMEM8B	ENSG00000137103|ENST00000643932|TMEM8B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.3027648925781	2	495.288628	988.562703	0.29184	0.00014455	-1.47	-0.00072808	-1.1782	-0.00058353	495.2876339361952	112.68	1.1005	111.17	110.74	111.84	-1.5111					34	21	2	0	0	0	0.027462	1	10461	10461		23.042	1.0826	1	64094			57297	4558	47273	47315	62719	62719					0.06796455373739718
TLLLCLSNL	9	Unmodified	_TLLLCLSNL_					0	0	0		ENSG00000137103|ENST00000643932|TMEM8B;nc|ENSG00000137103|A6NDV4-3|TMEM8B;nc|ENSG00000137103|A6NDV4-2|TMEM8B;nc|ENSG00000137103|A6NDV4|TMEM8B	ENSG00000137103|ENST00000643932|TMEM8B	ENSG00000137103|ENST00000643932|TMEM8B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	495.288628	988.562703	0.46143	0.00022854	-1.1402	-0.00056472	-0.67875	-0.00033618	495.2878827629546	111.04	1.1354	110.9	110.34	111.47	-0.13961	-0.14322	0.00079696	NaN	30.504	35	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43658			57298	4558	47273	47315							0.06796455373739718
TLLLCLSNL	9	Unmodified	_TLLLCLSNL_					0	0	0		ENSG00000137103|ENST00000643932|TMEM8B;nc|ENSG00000137103|A6NDV4-3|TMEM8B;nc|ENSG00000137103|A6NDV4-2|TMEM8B;nc|ENSG00000137103|A6NDV4|TMEM8B	ENSG00000137103|ENST00000643932|TMEM8B	ENSG00000137103|ENST00000643932|TMEM8B	MULTI-MATCH	OvCa9_classI_Rep3	3		2	495.288628	988.562703	1.6746	0.00082941	-2.809	-0.0013912	-1.1344	-0.00056184	495.28714376836916	112.17	1.1832	111.07	110.65	111.83	-1.1038	0.019341	-0.0008561	NaN	30.504	36	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62353			57299	4558	47273	47315							0.06796455373739718
TLLLENPLG	9	Unmodified	_TLLLENPLG_					0	0	0		ENSG00000196305|ENST00000443024|IARS1;IPPK-IARS|1|fusion	ENSG00000196305|ENST00000443024|IARS1	ENSG00000196305|ENST00000443024|IARS1	MULTI-MSMS	OvCa9_classI_Rep2	2	485.28338623046875	2	485.2844	968.554247	-1.9489	-0.00094577	-1.0764	-0.00052236	-3.0253	-0.0014681	485.2837680529316	35.087	1.3898	32.377	32.109	33.499	-2.7097					66	27	4	0	0	0	0.42676	1	1384	1384		49.442	1.7842	1	549360			57300	8588	47274	47316	62720	62720					0.06871224728763536
TLLLEQKALD	10	Unmodified	_TLLLEQKALD_					0	0	0		nc|ENSG00000146147|Q5VWP3-1|MLIP;nc|ENSG00000146147|Q5VWP3-4|MLIP;ENST00000511744.1_1_6:53976250-54068425:+|nuORF;ENSG00000146147|ENST00000502396|MLIP	nc|ENSG00000146147|Q5VWP3-1|MLIP	nc|ENSG00000146147|Q5VWP3-1|MLIP	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.2942504882812	2	572.334621	1142.65469	0.64285	0.00036792	2.1833	0.0012496	2.8261	0.0016175	572.335842525312	141.81	0.44974	141.81	141.59	142.04	0					13	8	2	0	0	0	0.026659	1	16570	16570		54.776	5.3348	1	48024			57301	5269	47275	47317	62721	62721					0.08906836991764067
TLLLGKWKI	9	Unmodified	_TLLLGKWKI_					0	0	0			REV__ENST00000595138.1_1_19:43519232-43530599:-|nuORF	REV__ENST00000595138.1_1_19:43519232-43530599:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	536.3505859375	2	536.349877	1070.6852	1.3328	0.00071487	0.80236	0.00043035	2.1352	0.0011452	536.3502106663832	146.5	2.7916	146.5	146.08	148.87	0					135	56	4	0	0	0	0.48324	1	17254	17254		44.117	1.7207	1	2085000	+		57302	23390	47276	47318	62722	62722					0.15268660167453163
TLLLKKVITGK	11	Unmodified	_TLLLKKVITGK_					0	0	0			REV__HECTD3|p.D550Nfs*10|1|0.08|ENSG00000126107|chr1:45006770-45006771|-/ATTG|frameshift_variant	REV__HECTD3|p.D550Nfs*10|1|0.08|ENSG00000126107|chr1:45006770-45006771|-/ATTG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	607.2893676757812	2	607.415749	1212.81694	1.9677	0.0011952	-0.9235	-0.00056095	1.0442	0.00063427	607.4173447321189	117.1	0.32145	117.1	116.95	117.27	0					8	6	2	0	0	0	0.026289	1	13420	13420		4.9057	0	1	22417	+		57303	18773	47277	47319	62723	62723					0.21904845464518985
TLLLLLLDL	9	Unmodified	_TLLLLLLDL_					0	0	0			REV__ENSG00000120451|ENST00000265909|SNX19	REV__ENSG00000120451|ENST00000265909|SNX19	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.2761840820312	2	513.844093	1025.67363	-0.86185	-0.00044286	-1.4275	-0.0007335	-2.2893	-0.0011764	513.8432489848284	93.477	0.75761	91.516	91.279	92.036	-1.9617					22	14	2	0	0	0	0.027462	1	5960	5960		38.806	24.669	1	27054	+		57304	18500	47278	47320	62724	62724					0.16182418353491812
TLLLNKEMVL	10	Unmodified	_TLLLNKEMVL_					0	0	0			REV__ENSG00000116668|ENST00000367500|SWT1	REV__ENSG00000116668|ENST00000367500|SWT1	MULTI-SECPEP	OvCa9_classI_Rep3	3	588.2982177734375	2	587.349217	1172.68388	-2.2566	-0.0013254	-2.6901	-0.00158	-4.9467	-0.0029054	587.3475793076784	87.547	0.82472	85.371	85.138	85.963	-2.1768					36	15	3	0	0	0	0.02663	1	5250	5250		51.193	11.94	1	48967	+		57305	18309	47279	47321	62725	62725					0.10444658016422181
TLLLWEASP	9	Unmodified	_TLLLWEASP_					0	0	0		ENST00000284037.9_1_5:65222385-65222559:+|nuORF	ENST00000284037.9_1_5:65222385-65222559:+|nuORF	ENST00000284037.9_1_5:65222385-65222559:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7976684570312	2	515.2844	1028.55425	-0.65496	-0.00033749	-3.9763	-0.0020489	-4.6313	-0.0023864	515.28258853821	55.213	0.49722	55.213	55.023	55.52	0					17	11	2	0	0	0	0.027462	1	4531	4531		40.573	6.4001	1	226690			57306	10064	47280	47322	62726	62726					0.04111224728740126
TLLLWEASP	9	Unmodified	_TLLLWEASP_					0	0	0		ENST00000284037.9_1_5:65222385-65222559:+|nuORF	ENST00000284037.9_1_5:65222385-65222559:+|nuORF	ENST00000284037.9_1_5:65222385-65222559:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.2844	1028.55425	-0.37712	-0.00019432	-2.4561	-0.0012656	-2.8332	-0.0014599	515.282690915283	58.216	0.5538	55.424	55.022	55.576	-2.792	0.10335	0.001257	NaN	35.618	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39039			57307	10064	47280	47322							0.04111224728740126
TLLLWEASP	9	Unmodified	_TLLLWEASP_					0	0	0		ENST00000284037.9_1_5:65222385-65222559:+|nuORF	ENST00000284037.9_1_5:65222385-65222559:+|nuORF	ENST00000284037.9_1_5:65222385-65222559:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	515.2844	1028.55425	-0.38809	-0.00019998	-3.8563	-0.0019871	-4.2444	-0.0021871	515.2821940261892	58.717	0.85294	55.325	54.852	55.705	-3.392	0.0039539	-0.0001861	NaN	35.618	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	265480			57308	10064	47280	47322							0.04111224728740126
TLLLYDELL	9	Unmodified	_TLLLYDELL_					0	0	0		DOCK4|p.F1456Lfs*4|1|0.11|ENSG00000128512|chr7:111755521-111755536|ACGCTTTTCCACTTCA/-|frameshift_variant;nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4	DOCK4|p.F1456Lfs*4|1|0.11|ENSG00000128512|chr7:111755521-111755536|ACGCTTTTCCACTTCA/-|frameshift_variant;nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.2614135742188	2	546.81299	1091.61143	1.1439	0.00062551	-0.74885	-0.00040948	0.39507	0.00021603	546.8141531513797	98.344	0.21427	98.344	98.247	98.461	0					6	4	2	0	0	0	0.027462	1	10841	10841		24.203	17.467	1	63658			57309	3882;758	47281	47323	62727	62727					0.06928647214476769
TLLMAVLVL	9	Unmodified	_TLLMAVLVL_					0	0	0		nc|ENSG00000174233|O43306-2|ADCY6;ENSG00000174233|ENST00000357869|ADCY6	nc|ENSG00000174233|O43306-2|ADCY6	nc|ENSG00000174233|O43306-2|ADCY6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.27447509765625	2	486.811739	971.608925	0.031193	1.5185E-05	3.418	0.0016639	3.4491	0.0016791	486.8131600825709	78.891	0.42679	76.139	75.991	76.418	-2.7514					11	8	2	0	0	0	0.027456	1	6359	6359		38.806	0	1	34128			57310	7450	47282	47324	62728	62728					0.12198520275831015
TLLMRGLDVV	10	Unmodified	_TLLMRGLDVV_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.8245849609375	2	558.825909	1115.63727	-0.73073	-0.00040835	-2.4892	-0.001391	-3.22	-0.0017994	558.8244242973437	125.01	2.7525	123.61	123.23	125.98	-1.3908					97	54	3	0	0	0	0.63752	1	11864	11864		37.508	4.6958	1	171930	+		57311	16672	47283	47325	62729	62729					0.0840721818512975
TLLNVIKSV	9	Unmodified	_TLLNVIKSV_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ENST00000538984.1_1_12:26564247-26572125:-|nuORF;ARL8B-ITPR1|2|fusion;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ARL8B-ITPR1|4|fusion;ARL8B-ITPR1|5|fusion;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1	ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-7|ITPR1	nc|ENSG00000150995|Q14643-7|ITPR1	MULTI-MSMS	OvCa99_classI_Rep5	1	493.81658935546875	2	493.815867	985.617182	1.258	0.00062122	0.69208	0.00034176	1.9501	0.00096298	493.81613426202136	109.11	1.5991	109.11	108.8	110.4	0					77	35	3	0	0	0	0.020196	2	12372	12349;12372		146.79	53.188	1	1340900			57312	3571;5526	47284	47326	62730;62731	62731					0.12379790516808953
TLLNVIKSV	9	Unmodified	_TLLNVIKSV_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ENST00000538984.1_1_12:26564247-26572125:-|nuORF;ARL8B-ITPR1|2|fusion;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ARL8B-ITPR1|4|fusion;ARL8B-ITPR1|5|fusion;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1	ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-7|ITPR1	nc|ENSG00000150995|Q14643-7|ITPR1	MULTI-MSMS	OvCa9_classI_Rep2	2	493.8152160644531	2	493.815867	985.617182	0.52388	0.0002587	-1.0253	-0.00050629	-0.50138	-0.00024759	493.8152114616585	109.68	2.175	109.51	108.97	111.14	-0.17236					83	43	3	0	0	0	0.061524	3	10312	10301;10306;10312		112.11	51.989	1	115460			57313	3571;5526	47284	47326	62732;62733;62734	62734					0.12379790516808953
TLLNVIKSV	9	Unmodified	_TLLNVIKSV_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ENST00000538984.1_1_12:26564247-26572125:-|nuORF;ARL8B-ITPR1|2|fusion;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ARL8B-ITPR1|4|fusion;ARL8B-ITPR1|5|fusion;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1	ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-7|ITPR1	nc|ENSG00000150995|Q14643-7|ITPR1	MULTI-MSMS	OvCa9_classI_Rep3	3	493.81573486328125	2	493.815867	985.617182	0.60229	0.00029742	-1.3246	-0.00065409	-0.72227	-0.00035667	493.8150750944055	110.81	1.8189	109.7	109.12	110.94	-1.1038					67	35	3	0	0	0	0.13326	1	8017	8017		88.177	23.97	1	116530			57314	3571;5526	47284	47326	62735	62735					0.12379790516808953
TLLNVIKSV	9	Unmodified	_TLLNVIKSV_					0	0	0		ENSG00000123104|ENST00000381340|ITPR2;ENST00000538984.1_1_12:26564247-26572125:-|nuORF;ARL8B-ITPR1|2|fusion;ENST00000493491.5_1_3:4841632-4887906:+|nuORF;nc|ENSG00000150995|Q14643-7|ITPR1;nc|ENSG00000150995|Q14643-6|ITPR1;nc|ENSG00000150995|Q14643-2|ITPR1;ENSG00000150995|ENST00000649015|ITPR1;ARL8B-ITPR1|4|fusion;ARL8B-ITPR1|5|fusion;nc|ENSG00000150995|Q14643-4|ITPR1;nc|ENSG00000150995|Q14643-3|ITPR1;nc|ENSG00000150995|Q14643-8|ITPR1;nc|ENSG00000150995|Q14643-5|ITPR1	ENSG00000123104|ENST00000381340|ITPR2;nc|ENSG00000150995|Q14643-7|ITPR1	nc|ENSG00000150995|Q14643-7|ITPR1	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.8152770996094	2	493.815867	985.617182	0.67242	0.00033205	-1.4022	-0.00069245	-0.72982	-0.0003604	493.8150841668114	111.26	1.8858	109.73	109.19	111.08	-1.5307					72	35	4	0	0	0	0.0441	2	10242	10242;10251		123.21	46.434	1	137490			57315	3571;5526	47284	47326	62736;62737	62736					0.12379790516808953
TLLPGVLNQS	10	Unmodified	_TLLPGVLNQS_					0	0	0			REV__ENST00000331343.11_1_21:46702336-46705691:-|nuORF	REV__ENST00000331343.11_1_21:46702336-46705691:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.347412109375	2	521.300581	1040.58661	1.3999	0.00072977	-1.3058	-0.0006807	0.094129	4.907E-05	521.2993735214657	129.21	0.54439	128.98	128.72	129.27	-0.22697					15	10	2	0	0	0	0.026577	1	12687	12687		67.494	6.5217	1	14079	+		57316	24535	47285	47327	62738	62738					0.06794012131740601
TLLPGVLNQS	10	Unmodified	_TLLPGVLNQS_					0	0	0			REV__ENST00000331343.11_1_21:46702336-46705691:-|nuORF	REV__ENST00000331343.11_1_21:46702336-46705691:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	521.300581	1040.58661	0.52002	0.00027109	-0.33424	-0.00017424	0.18578	9.6848E-05	521.3001115778458	129.91	0.54422	128.8	128.64	129.18	-1.1121	-0.068237	0.00058734	NaN	67.494	18	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12130	+		57317	24535	47285	47327							0.06794012131740601
TLLPGVLNQS	10	Unmodified	_TLLPGVLNQS_					0	0	0			REV__ENST00000331343.11_1_21:46702336-46705691:-|nuORF	REV__ENST00000331343.11_1_21:46702336-46705691:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	521.300581	1040.58661	2.0301	0.0010583	-1.3273	-0.00069192	0.70285	0.00036639	521.299466529686	130.3	0.69316	128.82	128.51	129.21	-1.4779	-0.047311	-0.00044802	NaN	67.494	22	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26321	+		57318	24535	47285	47327							0.06794012131740601
TLLPLRVFL	9	Unmodified	_TLLPLRVFL_					0	0	0		nc|ENSG00000169762|Q6NXT6-2|TAPT1;ENSG00000169762|ENST00000405303|TAPT1	nc|ENSG00000169762|Q6NXT6-2|TAPT1	nc|ENSG00000169762|Q6NXT6-2|TAPT1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.3511962890625	2	536.349877	1070.6852	1.3328	0.00071487	0.80236	0.00043035	2.1352	0.0011452	536.3502106663832	146.5	2.7916	146.5	146.08	148.87	0					135	56	4	0	0	0	0.22621	1	17131	17131		71.877	27.761	1	2085000			57319	7037	47286	47328	62739	62739					0.15268660167453163
TLLRLQLEN	9	Unmodified	_TLLRLQLEN_					0	0	0		ENSG00000095066|ENST00000397668|HOOK2;nc|ENSG00000095066|Q96ED9-2|HOOK2;ENST00000589398.1_1_19:12876641-12878865:-|nuORF	ENSG00000095066|ENST00000397668|HOOK2	ENSG00000095066|ENST00000397668|HOOK2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.8150634765625	2	550.327131	1098.63971	0.6361	0.00035006	-0.64805	-0.00035664	-0.01195	-6.5766E-06	550.3269167378148	67.318	0.44629	63.827	63.492	63.938	-3.4902					10	8	2	0	0	0	0.027433	1	4907	4907		34.173	0	1	33399			57320	1920	47287	47329	62740	62740					0.09433389914443069
TLLRNLPSLP	10	Unmodified	_TLLRNLPSLP_					0	0	0		ENST00000250340.8_1_19:51228779-51228962:+|nuORF	ENST00000250340.8_1_19:51228779-51228962:+|nuORF	ENST00000250340.8_1_19:51228779-51228962:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	562.3429565429688	2	562.345323	1122.67609	-1.142	-0.00064221	-2.621	-0.0014739	-3.7631	-0.0021161	562.3438081477608	141.84	4.7959	141.62	140.24	145.03	-0.22697					133	96	2	0	0	0	0.75313	1	14326	14326		24.519	2.8334	1	113870			57321	9794	47288	47330	62741	62741					0.11966266811123205
TLLRRGGRAV	10	Unmodified	_TLLRRGGRAV_					0	0	0			REV__ENSG00000173546|ENST00000308508|CSPG4	REV__ENSG00000173546|ENST00000308508|CSPG4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.8150634765625	2	549.846356	1097.67816	0.43278	0.00023796	1.0395	0.00057157	1.4723	0.00080953	549.8467434262103	67.152	0.44581	63.662	63.442	63.888	-3.4902					13	8	2	0	0	0	0.026523	1	4907	4907		32.812	0	1	26876	+		57322	21782	47289	47331	62742	62742					0.13322740339617667
TLLRWYDGG	9	Unmodified	_TLLRWYDGG_					0	0	0			REV__ENSG00000088882|ENST00000380605|CPXM1	REV__ENSG00000088882|ENST00000380605|CPXM1	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.6619873046875	2	540.777274	1079.53999	-0.32863	-0.00017772	2.0763	0.0011228	1.7476	0.00094507	541.2800429532814	92.679	1.3942	91.511	91.129	92.523	-1.168					64	26	5	0	0	0	0.027448	1	8238	8238		35.618	6.4482	1	70590	+		57323	17187	47290	47332	62743	62743					0.003405723004561878
TLLSFHDSP	9	Unmodified	_TLLSFHDSP_					0	0	0			REV__ENSG00000138767|ENST00000504123|CNOT6L	REV__ENSG00000138767|ENST00000504123|CNOT6L	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.7616882324219	2	508.756007	1015.49746	0.56772	0.00028883	3.1618	0.0016086	3.7295	0.0018974	509.25979153502374	126.44	0.6393	126.21	125.85	126.49	-0.2359					22	12	3	0	0	0	0.02741	1	12340	12340		60.972	7.6205	1	21176	+		57324	19569	47291	47333	62744	62744					-0.00966822827751912
TLLSNIQGV	9	Unmodified	_TLLSNIQGV_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;PLIN2|p.Q379Lfs*8|1|0.08|ENSG00000147872|chr9:19116426-19116427|-/TGTTTTCATGGAGA|frameshift_variant;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	OvCa99_classI_Rep5	1	472.7752685546875	2	472.7742	943.533846	1.5681	0.00074135	0.48738	0.00023042	2.0555	0.00097177	472.77444637486826	115.21	0.5131	115.21	114.98	115.49	0					17	10	2	0	0	0	0.083631	1	13163	13163		101.6	8.4052	1	67404			57325	5378	47292	47334	62745	62745					0.05982054068965681
TLLSSRRIV	9	Unmodified	_TLLSSRRIV_					0	0	0			REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	REV__nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.8058471679688	2	522.82984	1043.64513	0.30493	0.00015943	2.8969	0.0015146	3.2018	0.001674	522.8311596038104	93.272	1.0339	92.104	91.855	92.889	-1.168					39	19	3	0	0	0	0.027462	1	8345	8345		23.042	0	1	29212	+		57326	17152	47293	47335	62746	62746					0.1250511349687713
TLLTAIVKL	9	Unmodified	_TLLTAIVKL_					0	0	0		nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	MULTI-MSMS	OvCa99_classI_Rep5	1	486.32965087890625	2	486.328611	970.642668	1.8621	0.00090558	-0.046514	-2.2621E-05	1.8156	0.00088296	486.32842258024266	128.66	1.3506	128.66	128.37	129.72	0					63	28	4	0	0	0	0.059253	2	14914	14892;14914		113.41	36.565	1	546870			57327	872	47294	47336	62747;62748	62748					0.15617265039236372
TLLTIPASRG	10	Unmodified	_TLLTIPASRG_					0	0	0		ENST00000525704.2_1_11:126870607-126870700:-|nuORF	ENST00000525704.2_1_11:126870607-126870700:-|nuORF	ENST00000525704.2_1_11:126870607-126870700:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	514.8097534179688	2	514.808574	1027.60259	0.2235	0.00011506	2.6505	0.0013645	2.874	0.0014796	514.8100220050112	114.83	1.7269	113.77	113.4	115.13	-1.055					61	34	2	0	0	0	0.44431	1	8532	8532		62.107	7.3311	1	447140			57328	13197	47295	47337	62749	62749					0.0898971836866167
TLLTIPGSGL	10	Unmodified	_TLLTIPGSGL_					0	0	0			REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	486.29095458984375	2	486.292225	970.569897	-0.28888	-0.00014048	-2.8179	-0.0013703	-3.1067	-0.0015108	486.2907334904176	46.526	1.9813	43.817	43.349	45.331	-2.7097					83	39	4	0	0	0	0.69986	1	2775	2775		30.504	0	1	653600	+		57329	17513	47296	47338	62750	62750					0.08343511245811897
TLLVRGTTAN	10	Unmodified	_TLLVRGTTAN_					0	0	0			REV__tr|A0A553SGR3|A0A553SGR3_NIACIDUF969domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11365PE=4SV=1	REV__tr|A0A553SGR3|A0A553SGR3_NIACIDUF969domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11365PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3036499023438	2	523.303655	1044.59276	-2.1228	-0.0011108	2.0352	0.001065	-0.087543	-4.5811E-05	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.75313	1	11502	11502		24.519	0.31644	1	183010	+		57330	29731	47297	47339	62751	62751					0.07224530363282611
TLLVRPLL	8	Unmodified	_TLLVRPLL_					0	0	0			REV__CUTA|p.A113Efs*28|1|0.06|ENSG00000112514|chr6:33417289-33417290|-/CA|frameshift_variant	REV__CUTA|p.A113Efs*28|1|0.06|ENSG00000112514|chr6:33417289-33417290|-/CA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	462.81585693359375	2	462.81567	923.616788	1.3541	0.00062669	-1.2283	-0.00056849	0.12575	5.8198E-05	462.81490248435756	123.95	1.1912	122.91	122.62	123.81	-1.0377					36	22	3	0	0	0	0.75723	1	9596	9596		23.042	1.0826	1	70585	+		57331	16260	47298	47340	62752	62752					0.15192415587614505
TLLVVMGTLV	10	Unmodified	_TLLVVMGTLV_					0	0	0		ENSG00000080166|ENST00000377028|DCT;nc|ENSG00000080166|P40126-2|DCT	ENSG00000080166|ENST00000377028|DCT	ENSG00000080166|ENST00000377028|DCT	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.322509765625	2	523.319928	1044.6253	3.2837	0.0017184	3.5635	0.0018649	6.8472	0.0035833	523.3216227934925	132.7	1.7146	131.2	130.95	132.66	-1.5015					74	34	3	0	0	0	0.3976	1	12781	12781		68.787	0	1	157630			57332	1628	47299	47341	62753	62753					0.10477601441925799
TLLWQENI	8	Unmodified	_TLLWQENI_					0	0	0			REV__nc|ENSG00000257017|P00738-2|HP	REV__nc|ENSG00000257017|P00738-2|HP	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.7770690917969	2	508.7742	1015.53385	-0.13736	-6.9884E-05	3.3933	0.0017264	3.2559	0.0016565	508.77580932250646	83.619	1.3316	80.956	80.583	81.914	-2.6629					63	27	4	0	0	0	0.66992	1	6970	6970		49.442	1.482	1	464040	+		57333	23542	47300	47342	62754	62754					0.02670054068948957
TLLWVSNC	8	Unmodified	_TLLWVSNC_					0	0	0		ENST00000483863.2_1_1:66833405-66833483:+|nuORF	ENST00000483863.2_1_1:66833405-66833483:+|nuORF	ENST00000483863.2_1_1:66833405-66833483:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	467.2456970214844	2	468.236396	934.458238	-0.6074	-0.00028441	3.5092	0.0016431	2.9018	0.0013587	468.23800762817376	53.536	0.81816	50.328	50.097	50.915	-3.208					23	15	2	0	0	0	0.028476	1	3244	3244		21.96	0	1	82505			57334	12592	47301	47343	62755	62755					-0.011612463829806075
TLMDILPRI	9	Unmodified	_TLMDILPRI_					0	0	0		nc|ENSG00000167716|Q562E7-4|WDR81;ENSG00000167716|ENST00000409644|WDR81;nc|ENSG00000167716|Q562E7-2|WDR81;nc|ENSG00000167716|Q562E7-6|WDR81;nc|ENSG00000167716|Q562E7-5|WDR81;nc|ENSG00000167716|Q562E7-3|WDR81;ENST00000464528.5_1_17:1630890-1639119:+|nuORF	nc|ENSG00000167716|Q562E7-4|WDR81	nc|ENSG00000167716|Q562E7-4|WDR81	MULTI-MSMS	OvCa99_classI_Rep5	1	536.31689453125	2	536.315177	1070.6158	0.8848	0.00047453	1.5632	0.00083837	2.448	0.0013129	536.3157656946299	139.82	1.7734	139.82	139.46	141.23	0					110	36	5	0	0	0	0.014964	4	16320	16302;16320;16344;16369		153.04	23.941	1	1199500			57335	6836	47302	47344	62756;62757;62758;62759	62757					0.08331833156398716
TLMERTVSL	9	Unmodified	_TLMERTVSL_					0	0	0		nc|ENSG00000197712|Q8IWE2-2|FAM114A1;ENSG00000197712|ENST00000358869|FAM114A1	nc|ENSG00000197712|Q8IWE2-2|FAM114A1	nc|ENSG00000197712|Q8IWE2-2|FAM114A1	MULTI-MSMS	OvCa99_classI_Rep5	1	525.28759765625	2	525.286617	1048.55868	2.3331	0.0012255	-0.012052	-6.3305E-06	2.321	0.0012192	525.2864535783314	86.486	1.9376	86.486	86.192	88.13	0					97	46	4	0	0	0	0.17606	1	9136	9136		80.455	6.1996	1	8471400			57336	8738	47303	47345	62760	62760					0.03634365880020596
TLMIFGRRI	9	Unmodified	_TLMIFGRRI_					0	0	0			REV__ENSG00000205810|ENST00000396439|KLRC3	REV__ENSG00000205810|ENST00000396439|KLRC3	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8317260742188	2	553.828786	1105.64302	1.4061	0.00077877	0.88233	0.00048866	2.2885	0.0012674	553.8291816775361	139.45	3.0735	137.95	136.76	139.84	-1.4952					150	61	3	0	0	0	0.55588	1	13651	13651		37.159	4.3467	1	110800	+		57337	23228	47304	47346	62761	62761					0.09442361487435846
TLMILAFII	9	Unmodified	_TLMILAFII_					0	0	0			REV__tr|A0A553SFY1|A0A553SFY1_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09695PE=4SV=1	REV__tr|A0A553SFY1|A0A553SFY1_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09695PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	517.8187866210938	2	517.819564	1033.62458	-3.1809	-0.0016471	2.7662	0.0014324	-0.41471	-0.00021475	517.8208401920543	146.89	1.3501	145.93	145.54	146.89	-0.95947					60	26	3	0	0	0	0.65476	1	12337	12337		25.45	1.2474	1	132640	+		57338	29634	47305	47347	62762	62762					0.10910806792867334
TLMQKLSSE	9	Unmodified	_TLMQKLSSE_					0	0	0			REV__ENST00000393381.2_1_4:170652997-170658846:-|nuORF	REV__ENST00000393381.2_1_4:170652997-170658846:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.8005981445312	2	518.7708	1035.52705	-0.57521	-0.0002984	-3.4769	-0.0018037	-4.0521	-0.0021021	518.7683896842661	87.036	1.4237	84.86	84.23	85.654	-2.1768					39	26	2	0	0	0	0.027462	1	5137	5137		21.96	0	1	161900	+		57339	25280	47306	47348	62763	62763					0.010703731260491622
TLMSEKFES	9	Unmodified	_TLMSEKFES_					0	0	0			REV__ENST00000545686.6_1_14:90453383-90509484:+|nuORF	REV__ENST00000545686.6_1_14:90453383-90509484:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.340576171875	2	536.254982	1070.49541	-1.0634	-0.00057024	4.4082	0.0023639	3.3448	0.0017937	536.2572666360542	48.186	0.76851	45.078	44.888	45.657	-3.1077					25	14	3	0	0	0	0.027441	1	2681	2681		49.442	7.0454	1	60483	+		57340	16636	47307	47349	62764	62764					-0.037016196278727875
TLMVIKEPI	9	Oxidation (M)	_TLM(Oxidation (M))VIKEPI_		TLM(1)VIKEPI		TLM(62)VIKEPI	0	0	1		ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	MULTI-MSMS	OvCa9_classI_Rep3	3	530.3075561523438	2	530.309561	1058.60457	-0.14461	-7.6688E-05	-3.4911	-0.0018514	-3.6357	-0.0019281	530.3076035340549	118.34	1.4886	117.31	117.03	118.52	-1.0324					73	29	4	0	0	0	0.31122	1	8946	8946		61.691	6.9689	1	450800			57341	7413	47308	47350	62765	62765		223			0.07761011062257239
TLMWTGVND	9	Unmodified	_TLMWTGVND_					0	0	0			REV__ENSG00000198734|ENST00000367797|F5	REV__ENSG00000198734|ENST00000367797|F5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.2831420898438	2	518.742042	1035.46953	1.0952	0.00056814	4.317	0.0022394	5.4122	0.0028075	519.2452268678254	67.765	0.2444	64.274	64.186	64.43	-3.4902					6	4	2	0	0	0	0.027047	1	5000	5000		76.774	12.567	1	18115	+	+	57342	23055	47309	47351	62766	62766					-0.04678469079499337
TLNAIQGSFE	10	Unmodified	_TLNAIQGSFE_					0	0	0			REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4	REV__nc|ENSG00000156920|Q8IZF6-2|ADGRG4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.3079833984375	2	540.272021	1078.52949	-1.7307	-0.00093507	-0.73437	-0.00039676	-2.4651	-0.0013318	540.2719721752879	120.56	0.73285	119.22	118.56	119.29	-1.3444					18	13	2	0	0	0	0.026681	1	11345	11345		52.937	8.8199	1	21614	+		57343	20503	47310	47352	62767	62767					-0.0066345514460408594
TLNDREYQL	9	Unmodified	_TLNDREYQL_					0	0	0		CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant;ENSG00000084774|ENST00000264705|CAD;CAD|p.A899Dfs*6|1|0.15|ENSG00000084774|chr2:27232497-27232498|-/A|frameshift_variant	CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	CAD|p.D2198Sfs*15|1|0.29|ENSG00000084774|chr2:27243430-27243448|CGGATCCCCGCGCAGCCTA/-|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	576.289794921875	2	576.288202	1150.56185	NaN	NaN	NaN	NaN	NaN	NaN	NaN	73.127	1	73.127	72.627	73.627	0								0	0	0	0.025959	1	7160	7160		104.06	7.8664	1				57344	176	47311	47353	62768	62768					-0.007406677416156526
TLNMQCVLKI	10	Unmodified	_TLNMQCVLKI_					0	0	0			REV__ENST00000415659.2_1_5:122364834-122372365:-|nuORF	REV__ENST00000415659.2_1_5:122364834-122372365:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	581.8219604492188	2	581.81977	1161.62499	-0.57827	-0.00033645	3.2937	0.0019163	2.7154	0.0015799	581.821625248966	136.1	1.0308	135.88	135.52	136.55	-0.22697					44	20	3	0	0	0	0.71173	1	13519	13519		29.17	2.4771	1	81744	+		57345	25534	47312	47354	62769	62769					0.05063858450398584
TLNPIGNSP	9	Unmodified	_TLNPIGNSP_					0	0	0			REV__ENST00000285850.11_1_14:23242802-23243633:-|nuORF	REV__ENST00000285850.11_1_14:23242802-23243633:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	456.74407958984375	2	456.742899	911.471246	0.19919	9.0977E-05	0.19586	8.9456E-05	0.39504	0.00018043	456.7428385788835	70.899	1.2208	70.899	70.528	71.749	0					78	30	4	0	0	0	0.38969	1	6839	6839		52.937	0	1	5628900	+		57346	24136	47313	47355	62770	62770					0.01196908000770236
TLNSKLLKV	9	Unmodified	_TLNSKLLKV_					0	0	0		nc|ENSG00000140455|Q9Y6I4-2|USP3;ENSG00000140455|ENST00000380324|USP3	nc|ENSG00000140455|Q9Y6I4-2|USP3	nc|ENSG00000140455|Q9Y6I4-2|USP3	MULTI-MSMS	OvCa99_classI_Rep5	1	508.3299560546875	2	508.329142	1014.64373	-0.44901	-0.00022825	0.29159	0.00014822	-0.15742	-8.0022E-05	508.3292285670263	68.375	1.1908	68.375	68.037	69.228	0					44	28	2	0	0	0	0.27001	1	6439	6439		66.429	11.653	1	1022700			57347	4841	47314	47356	62771	62771					0.1369947940813745
TLNSKLLKV	9	Unmodified	_TLNSKLLKV_					0	0	0		nc|ENSG00000140455|Q9Y6I4-2|USP3;ENSG00000140455|ENST00000380324|USP3	nc|ENSG00000140455|Q9Y6I4-2|USP3	nc|ENSG00000140455|Q9Y6I4-2|USP3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	508.329142	1014.64373	0.29699	0.00015097	-0.76508	-0.00038891	-0.46809	-0.00023794	508.32872837126257	71.05	1.561	68.512	67.998	69.559	-2.5376	-0.0631	-0.00060162	NaN	66.429	57	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66842			57348	4841	47314	47356							0.1369947940813745
TLNSKLLKV	9	Unmodified	_TLNSKLLKV_					0	0	0		nc|ENSG00000140455|Q9Y6I4-2|USP3;ENSG00000140455|ENST00000380324|USP3	nc|ENSG00000140455|Q9Y6I4-2|USP3	nc|ENSG00000140455|Q9Y6I4-2|USP3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	508.329142	1014.64373	0.029834	1.5165E-05	-0.15407	-7.8316E-05	-0.12423	-6.3151E-05	508.329003470297	71.285	1.3915	68.682	68.229	69.62	-2.6023	0.10704	1.9576E-05	NaN	66.429	63	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72476			57349	4841	47314	47356							0.1369947940813745
TLNSKLLKV	9	Unmodified	_TLNSKLLKV_					0	0	0		nc|ENSG00000140455|Q9Y6I4-2|USP3;ENSG00000140455|ENST00000380324|USP3	nc|ENSG00000140455|Q9Y6I4-2|USP3	nc|ENSG00000140455|Q9Y6I4-2|USP3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	508.329142	1014.64373	-1.4614	-0.00074286	0.45227	0.0002299	-1.0091	-0.00051296	508.3293480576044	72.187	1.3108	68.731	68.317	69.628	-3.4563	0.15588	0.00063601	NaN	66.429	46	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75962			57350	4841	47314	47356							0.1369947940813745
TLNYRRSF	8	Unmodified	_TLNYRRSF_					0	0	0			REV__ENSG00000187187|ENST00000347077|ZNF546	REV__ENSG00000187187|ENST00000347077|ZNF546	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.806396484375	2	528.78289	1055.55123	-2.2016	-0.0011642	0.74929	0.00039621	-1.4524	-0.00076798	528.7832736581908	88.83	1.1028	86.227	85.477	86.58	-2.6027					32	21	2	0	0	0	0.028476	1	7509	7509		39.253	7.723	1	31325	+		57351	22634	47315	47357	62772	62772					0.02567394394600342
TLPAALLFPL	10	Unmodified	_TLPAALLFPL_					0	0	0		ENST00000395340.5_1_20:61521863-61522052:-|nuORF	ENST00000395340.5_1_20:61521863-61522052:-|nuORF	ENST00000395340.5_1_20:61521863-61522052:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	528.3282470703125	2	528.328611	1054.64267	0.61734	0.00032616	-0.83649	-0.00044194	-0.21915	-0.00011578	528.3279822328798	127.76	3.0131	127.54	127.09	130.11	-0.22697					168	60	4	0	0	0	0.55145	1	12636	12636		47.916	5.4411	1	313700			57352	11286	47316	47358	62773	62773					0.11753265039214966
TLPAHASQP	9	Unmodified	_TLPAHASQP_					0	0	0		ENST00000445604.6_1_9:66553265-66553673:-|nuORF;ENSG00000283886|ENST00000622735|unknown	ENST00000445604.6_1_9:66553265-66553673:-|nuORF	ENST00000445604.6_1_9:66553265-66553673:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	460.2779541015625	2	461.243067	920.47158	-0.074344	-3.4291E-05	0.15024	6.9296E-05	0.075894	3.5005E-05	461.24296777225294	52.937	0.77826	52.937	52.697	53.475	0					28	17	3	0	0	0	0.027462	1	4229	4229		15.642	0.77694	1	710820			57353	9619	47317	47359	62774	62774					0.008163277206108432
TLPCIAENVV	10	Unmodified	_TLPCIAENVV_					0	0	0		NTRK3|p.T283P|1|0.07|ENSG00000140538|chr15:88135959-88135959|T/G|missense_variant	NTRK3|p.T283P|1|0.07|ENSG00000140538|chr15:88135959-88135959|T/G|missense_variant	NTRK3|p.T283P|1|0.07|ENSG00000140538|chr15:88135959-88135959|T/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.752197265625	2	529.781167	1057.54778	2.729	0.0014457	-4.0463	-0.0021437	-1.3174	-0.00069791	529.779010827911	99.189	0.76485	99.189	98.764	99.529	0					31	18	2	0	0	0	0.026553	1	10901	10901		56.721	0	1	796950			57354	15442	47318	47360	62775	62775					0.021309635057150444
TLPFTVEPF	9	Unmodified	_TLPFTVEPF_					0	0	0		ENSG00000142149|ENST00000270112|HUNK	ENSG00000142149|ENST00000270112|HUNK	ENSG00000142149|ENST00000270112|HUNK	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.7962036132812	2	525.778951	1049.54335	-0.76898	-0.00040431	0.96277	0.0005062	0.19379	0.00010189	525.779361084521	58.382	1.0539	54.99	54.651	55.705	-3.392					26	20	2	0	0	0	0.027462	1	3905	3905		31.955	7.7521	1	65699			57355	4955	47319	47361	62776	62776					0.020558223544639986
TLPGCQNYLY	10	Unmodified	_TLPGCQNYLY_					0	0	0			REV__ENST00000398831.7_1_22:22050099-22050438:+|nuORF	REV__ENST00000398831.7_1_22:22050099-22050438:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.8156127929688	2	586.276249	1170.53795	0.95416	0.0005594	-2.6247	-0.0015388	-1.6705	-0.0009794	586.2756340964885	155.41	0.45605	155.41	155.02	155.48	0					11	8	2	0	0	0	0.026849	1	18196	18196		32.812	0	1	34292	+		57356	25381	47320	47362	62777	62777					-0.040502244996559966
TLPHHLLPL	9	Unmodified	_TLPHHLLPL_					0	0	0		nc|ENSG00000121210|A2VDJ0-3|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L;ENSG00000121210|ENST00000409959|TMEM131L;nc|ENSG00000121210|A2VDJ0-6|TMEM131L;nc|ENSG00000121210|A2VDJ0-2|TMEM131L;ENST00000497247.1_1_4:154523305-154524605:+|nuORF	nc|ENSG00000121210|A2VDJ0-3|TMEM131L	nc|ENSG00000121210|A2VDJ0-3|TMEM131L	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.2935180664062	2	520.816202	1039.61785	0.77263	0.0004024	-1.0825	-0.0005638	-0.3099	-0.0001614	520.8154793830661	125.16	0.59238	124.92	124.57	125.16	-0.2359					19	11	2	0	0	0	0.027456	1	12169	12169		30.504	0	1	14693			57357	3473	47321	47363	62778	62778					0.09962629956521596
TLPKEGLETN	10	Unmodified	_TLPKEGLETN_					0	0	0		ENST00000463718.5_1_12:21428225-21457481:-|nuORF;nc|ENSG00000084453|P46721-2|SLCO1A2;ENSG00000084453|ENST00000683939|SLCO1A2	ENST00000463718.5_1_12:21428225-21457481:-|nuORF	ENST00000463718.5_1_12:21428225-21457481:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.3043823242188	2	551.292953	1100.57135	0.15185	8.3713E-05	1.9368	0.0010678	2.0887	0.0011515	551.2937514773461	64.378	1.3113	60.903	60.588	61.9	-3.475					58	26	3	0	0	0	0.026551	1	4544	4544		60.118	0	1	205010			57358	1714	47322	47364	62779	62779					0.025091005439207947
TLPLFLFVL	9	Unmodified	_TLPLFLFVL_					0	0	0		ENST00000578651.5_1_18:683014-712587:-|nuORF	ENST00000578651.5_1_18:683014-712587:-|nuORF	ENST00000578651.5_1_18:683014-712587:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	531.2767333984375	2	531.833529	1061.6525	-1.9679	-0.0010466	-1.8144	-0.00096496	-3.7823	-0.0020116	532.3336475928809	85.868	0.24772	84.378	84.196	84.444	-1.4906					6	4	2	0	0	0	0.027462	1	7427	7427		42.474	15.678	1	13573			57359	13970	47323	47365	62780	62780					0.12414453044607399
TLPNILKKF	9	Unmodified	_TLPNILKKF_					0	0	0		PPP1CB-PLB1|5|fusion;PPP1CB-PLB1|6|fusion;PPP1CB-PLB1|3|fusion;PPP1CB-PLB1|7|fusion;PPP1CB-PLB1|4|fusion;PPP1CB-PLB1|8|fusion;PPP1CB-PLB1|1|fusion;nc|ENSG00000163803|Q6P1J6-3|PLB1;PPP1CB-PLB1|2|fusion;ENSG00000163803|ENST00000327757|PLB1;nc|ENSG00000163803|Q6P1J6-5|PLB1	PPP1CB-PLB1|5|fusion	PPP1CB-PLB1|5|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.2700805664062	2	537.33951	1072.66447	-1.0382	-0.00055786	-0.16681	-8.9631E-05	-1.205	-0.00064749	537.3392039506067	74.646	0.86837	71.415	71.144	72.012	-3.2308					33	17	3	0	0	0	0.027462	1	5877	5877		25.574	0	1	144750			57360	15516	47324	47366	62781	62781					0.13104069787800654
TLPPEAKLQLY	11	Unmodified	_TLPPEAKLQLY_					0	0	0			REV__CCDC141|p.F1294L|1|0.18|ENSG00000163492|chr2:178837337-178837337|G/C|missense_variant	REV__CCDC141|p.F1294L|1|0.18|ENSG00000163492|chr2:178837337-178837337|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	424.91168212890625	3	424.911456	1271.71254	-0.80186	-0.00034072	-1.7333	-0.00073648	-2.5351	-0.0010772	424.9107683657722	66.023	3.824	62.538	62.082	65.906	-3.4854					206	77	5	0	0	0	0.41331	1	4777	4777		60.167	16.516	1	5539100	+		57361	15747	47325	47367	62782	62782					0.08755098917185933
TLPPGGAGPL	10	Unmodified	_TLPPGGAGPL_					0	0	0		ENST00000371822.9_1_X:117480385-117480463:+|nuORF	ENST00000371822.9_1_X:117480385-117480463:+|nuORF	ENST00000371822.9_1_X:117480385-117480463:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	439.7532043457031	2	440.25036	878.486168	0.67859	0.00029875	-4.1401	-0.0018227	-3.4615	-0.0015239	440.24801910485854	104.35	0.46834	102.91	102.66	103.12	-1.4347					14	8	2	0	0	0	0.026519	1	7250	7250		45.952	10.751	1	8902.1			57362	10965	47326	47368	62783	62783					0.04206399868758126
TLPPKPGRRGK	11	Unmodified	_TLPPKPGRRGK_					0	0	0			REV__ENST00000553276.1_1_12:56094596-56094905:-|nuORF	REV__ENST00000553276.1_1_12:56094596-56094905:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	402.9197998046875	3	402.919168	1205.73567	1.4006	0.00056434	-1.3214	-0.00053243	0.079183	3.1904E-05	402.91856565389173	70.933	2.693	68.214	67.801	70.494	-2.7196					144	53	4	0	0	0	0.71098	1	3285	3285		25.892	0.76573	1	338740	+		57363	27509	47327	47369	62784	62784					0.1410358254518087
TLPPLVITK	9	Unmodified	_TLPPLVITK_					0	0	0			REV__ENSG00000130477|ENST00000519716|UNC13A	REV__ENSG00000130477|ENST00000519716|UNC13A	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.2970886230469	2	491.320786	980.627018	0.40302	0.00019801	-0.65846	-0.00032352	-0.25544	-0.0001255	491.32035633118596	97.776	1.1292	96.818	96.562	97.691	-0.95857					40	22	2	0	0	0	0.027462	1	8863	8863		25.574	0	1	192080	+		57364	18947	47328	47370	62785	62785					0.13592978522160593
TLPRPWDL	8	Unmodified	_TLPRPWDL_					0	0	0			REV__ENST00000446292.5_3_1:44679180-44679360:+|nuORF	REV__ENST00000446292.5_3_1:44679180-44679360:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.2814636230469	2	499.276909	996.539266	-0.079712	-3.9798E-05	-1.3622	-0.0006801	-1.4419	-0.0007199	499.2752782464916	58.451	0.46005	58.451	58.112	58.572	0					20	10	3	0	0	0	0.028476	1	4927	4927		23.042	3.6825	1	293260	+		57365	25901	47329	47371	62786	62786					0.04085777651414446
TLPRQPLVL	9	Unmodified	_TLPRQPLVL_					0	0	0		ENST00000475502.1_1_3:147108969-147110094:-|nuORF;ENST00000494569.5_1_3:147109809-147110196:-|nuORF	ENST00000475502.1_1_3:147108969-147110094:-|nuORF	ENST00000475502.1_1_3:147108969-147110094:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.2831420898438	2	518.829309	1035.64407	0.70936	0.00036804	-2.1911	-0.0011368	-1.4818	-0.00076879	518.8283774103169	67.304	0.98393	63.814	63.59	64.574	-3.4902					25	19	2	0	0	0	0.027462	1	5000	5000		29.15	0	1	88806			57366	12449	47330	47372	62787	62787					0.12766899127996112
TLPRSRSMT	9	Unmodified	_TLPRSRSMT_					0	0	0		nc|ENSG00000197658|Q8N4F4-1|SLC22A24;nc|ENSG00000197658|Q8N4F4-3|SLC22A24;ENSG00000197658|ENST00000612278|SLC22A24	nc|ENSG00000197658|Q8N4F4-1|SLC22A24	nc|ENSG00000197658|Q8N4F4-1|SLC22A24	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.3043823242188	2	524.782033	1047.54951	-1.1403	-0.00059839	-4.0605	-0.0021309	-5.2007	-0.0027293	524.7796680697229	73.947	0.99969	70.716	70.434	71.434	-3.2308					47	20	3	0	0	0	0.027462	1	5789	5789		21.96	9.753	1	115480			57367	8734	47331	47373	62788	62788					0.02764017314348166
TLPSELLLD	9	Unmodified	_TLPSELLLD_					0	0	0		nc|ENSG00000030304|O15146-3|MUSK;nc|ENSG00000030304|O15146-2|MUSK;ENSG00000030304|ENST00000374448|MUSK	nc|ENSG00000030304|O15146-3|MUSK	nc|ENSG00000030304|O15146-3|MUSK	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.8214111328125	2	500.78169	999.548827	1.3307	0.00066641	2.2424	0.001123	3.5732	0.0017894	500.7829644151792	109.88	0.58473	109.88	109.55	110.13	0					24	12	3	0	0	0	0.027448	1	12462	12462		44.117	14.967	1	131190			57368	1065	47332	47374	62789	62789					0.04903501146293365
TLPSMGESYFT	11	Unmodified	_TLPSMGESYFT_					0	0	0			REV__ENSG00000123643|ENST00000243389|SLC36A1;REV__ENSG00000186335|ENST00000335244|SLC36A2	REV__ENSG00000123643|ENST00000243389|SLC36A1	MULTI-MSMS	OvCa99_classI_Rep5	1	411.5237731933594	3	411.52164	1231.54309	3.0776	0.0012665	0.55892	0.00023001	3.6366	0.0014965	411.5217349529892	76.674	1.0159	76.674	76.365	77.381	0					68	24	4	0	0	0	0.70315	1	7711	7711		28.577	2.5133	1	2798200	+		57369	18652;22577	47333	47375	62790	62790					-0.0634196542769132
TLPSYDEAE	9	Unmodified	_TLPSYDEAE_					0	0	0		ENSG00000131507|ENST00000253814|NDFIP1	ENSG00000131507|ENST00000253814|NDFIP1	ENSG00000131507|ENST00000253814|NDFIP1	MULTI-MSMS	OvCa99_classI_Rep5	1	512.7274169921875	2	512.727112	1023.43967	2.3944	0.0012277	-2.7512	-0.0014106	-0.35681	-0.00018294	512.7254798327856	76.003	0.5639	76.003	75.801	76.365	0					25	13	2	0	0	0	0.27001	1	7601	7601		66.429	2.222	1	1367300			57370	4074	47334	47376	62791	62791					-0.07111129543852712
TLPTRQAL	8	Unmodified	_TLPTRQAL_					0	0	0		nc|ENSG00000152208|O43424-2|GRID2;GRID2|p.F974Cfs*33|1|0.05|ENSG00000152208|chr4:93772394-93772395|-/GTCGTCATCTGTGCACAAGCTA|frameshift_variant;ENSG00000152208|ENST00000282020|GRID2	nc|ENSG00000152208|O43424-2|GRID2	nc|ENSG00000152208|O43424-2|GRID2	MULTI-MSMS	OvCa9_classI_Rep2	2	450.2684631347656	2	450.269084	898.523616	3.0447	0.0013709	-2.8004	-0.001261	0.24425	0.00010998	450.2677429361468	71.284	1.9614	68.777	67.576	69.537	-2.5071					97	37	4	0	0	0	0.50674	1	5733	5733		76.847	0	1	619310			57371	5609	47335	47377	62792	62792					0.07029491134358068
TLPVGDLSN	9	Unmodified	_TLPVGDLSN_					0	0	0		ENST00000570055.5_1_16:70328730-70353576:+|nuORF;nc|ENSG00000260537|Q9UMR2-4|DDX19B	ENST00000570055.5_1_16:70328730-70353576:+|nuORF	ENST00000570055.5_1_16:70328730-70353576:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	457.77862548828125	2	458.242732	914.470912	-1.1614	-0.00053218	1.3601	0.00062327	0.19878	9.1091E-05	458.24308360706976	50.701	0.71254	47.527	47.36	48.072	-3.1734					20	13	2	0	0	0	0.027462	1	2985	2985		19.997	0	1	45183			57372	13887	47336	47378	62793	62793					0.010254882809022092
TLPYAREIT	9	Unmodified	_TLPYAREIT_					0	0	0			REV__nc|ENSG00000157765|O95436-2|SLC34A2	REV__nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.3289184570312	2	532.292756	1062.57096	2.0489	0.0010906	-0.1247	-6.6375E-05	1.9242	0.0010242	532.2956482044907	80.706	0.63916	80.706	80.354	80.993	0					34	14	4	0	0	0	0.027455	1	8288	8288		60.972	7.6205	1	393550	+		57373	20531	47337	47379	62794	62794					0.042177256146942455
TLPYAREIT	9	Unmodified	_TLPYAREIT_					0	0	0			REV__nc|ENSG00000157765|O95436-2|SLC34A2	REV__nc|ENSG00000157765|O95436-2|SLC34A2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	532.292756	1062.57096	-0.88332	-0.00047018	-1.931	-0.0010279	-2.8143	-0.001498	532.2915584605868	83.734	0.33868	81.072	80.828	81.167	-2.6629	0.18252	-0.00055663	NaN	60.972	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21034	+		57374	20531	47337	47379							0.042177256146942455
TLPYLAPLL	9	Unmodified	_TLPYLAPLL_					0	0	0			REV__ENST00000570069.5_1_16:1828464-1828845:+|nuORF	REV__ENST00000570069.5_1_16:1828464-1828845:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.7593994140625	2	500.807511	999.600469	-1.1473	-0.0005746	-3.0099	-0.0015074	-4.1572	-0.002082	500.805468187005	69.85	0.34005	66.369	66.249	66.589	-3.4812					10	6	2	0	0	0	0.027462	1	5245	5245		25.45	0	1	18533	+		57375	27733	47338	47380	62795	62795					0.10065289630847474
TLQDIVYKL	9	Unmodified	_TLQDIVYKL_					0	0	0		PCGF2|p.V259Lfs*53|1|0.65|ENSG00000277258|chr17:38735463-38735484|GCTGGGAGCCTTGTCGCTGACT/-|frameshift_variant;ENST00000456675.2_1_10:22615378-22616584:+|nuORF;PCGF2-CISD3|1|fusion;ENSG00000168283|ENST00000376663|BMI1;ENSG00000277258|ENST00000620225|PCGF2	PCGF2|p.V259Lfs*53|1|0.65|ENSG00000277258|chr17:38735463-38735484|GCTGGGAGCCTTGTCGCTGACT/-|frameshift_variant	PCGF2|p.V259Lfs*53|1|0.65|ENSG00000277258|chr17:38735463-38735484|GCTGGGAGCCTTGTCGCTGACT/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.3344116210938	2	546.818607	1091.62266	1.8095	0.00098949	0.031211	1.7067E-05	1.8407	0.0010066	546.8186173926692	115.43	0.42222	115.43	115.21	115.63	0					12	8	2	0	0	0	0.027462	1	13183	13183		42.864	0	1	84022			57376	15483	47339	47381	62796	62796					0.08051469308588821
TLQDLIQHG	9	Unmodified	_TLQDLIQHG_					0	0	0		ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	ENSG00000108021|ENST00000695737|TASOR2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.2931518554688	2	512.774731	1023.53491	0.71879	0.00036858	0.65174	0.00033419	1.3705	0.00070277	512.775067796789	35.064	0.45274	32.215	32.038	32.491	-2.849					13	8	2	0	0	0	0.027462	1	1082	1082		29.15	0.89528	1	13907			57377	2634	47340	47382	62797	62797					0.02408268437852712
TLQEDNPSGV	10	Unmodified	_TLQEDNPSGV_					0	0	0		nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.2833862304688	2	530.251286	1058.48802	-0.29448	-0.00015615	-1.7934	-0.00095097	-2.0879	-0.0011071	530.2500279476628	89.803	1.6576	87.228	86.656	88.313	-2.575					65	32	3	0	0	0	0.027001	1	7803	7803		35.152	16.89	1	163710			57378	1589	47341	47383	62798	62798					-0.038886359039452145
TLQINRFFP	9	Unmodified	_TLQINRFFP_					0	0	0			REV__ENST00000357066.7_1_19:2072329-2072617:-|nuORF	REV__ENST00000357066.7_1_19:2072329-2072617:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	567.3201293945312	2	568.316566	1134.61858	-1.9342	-0.0010993	-2.1865	-0.0012426	-4.1207	-0.0023419	568.3124048242299	85.383	1.0374	83.892	83.456	84.493	-1.4906					36	20	3	0	0	0	0.027462	1	7333	7333		44.117	6.3053	1	49631	+		57379	24778	47342	47384	62799	62799					0.056654246055586555
TLQINRFFP	9	Unmodified	_TLQINRFFP_					0	0	0			REV__ENST00000357066.7_1_19:2072329-2072617:-|nuORF	REV__ENST00000357066.7_1_19:2072329-2072617:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	568.316566	1134.61858	1.9912	0.0011316	-6.4057	-0.0036405	-4.4145	-0.0025088	568.3139316122787	83.859	0.2079	83.859	83.757	83.965	0	-0.12903	0.0023549	NaN	44.117	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88119	+		57380	24778	47342	47384							0.056654246055586555
TLQINRFFP	9	Unmodified	_TLQINRFFP_					0	0	0			REV__ENST00000357066.7_1_19:2072329-2072617:-|nuORF	REV__ENST00000357066.7_1_19:2072329-2072617:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	568.316566	1134.61858	-1.2863	-0.00073102	-10.403	-0.0059121	-11.689	-0.0066432	568.3106785198239	86.361	0.39996	84.141	84.037	84.437	-2.2204	0.15207	-0.0021884	NaN	44.117	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91721	+		57381	24778	47342	47384							0.056654246055586555
TLQLRSQPK	9	Unmodified	_TLQLRSQPK_					0	0	0		ENSG00000175267|ENST00000389398|VWA3A;VWA3A|p.L778Afs*11|2|0.13|ENSG00000175267|chr16:22140185-22140186|-/C|frameshift_variant;nc|ENSG00000175267|A6NCI4-2|VWA3A	ENSG00000175267|ENST00000389398|VWA3A	ENSG00000175267|ENST00000389398|VWA3A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.8108520507812	2	535.819473	1069.62439	-0.98391	-0.0005272	0.78614	0.00042123	-0.19777	-0.00010597	535.8197726900902	66.663	1.2338	63.173	62.853	64.087	-3.4902					43	24	2	0	0	0	0.02744	1	4880	4880		62.107	34.026	1	239250			57382	7531	47343	47385	62800	62800					0.09236523117237994
TLQPGVTTV	9	Unmodified	_TLQPGVTTV_					0	0	0		SORCS2|p.R839Lfs*24|1|0.03|ENSG00000184985|chr4:7723787-7723788|-/T|frameshift_variant;ENSG00000184985|ENST00000507866|SORCS2	SORCS2|p.R839Lfs*24|1|0.03|ENSG00000184985|chr4:7723787-7723788|-/T|frameshift_variant	SORCS2|p.R839Lfs*24|1|0.03|ENSG00000184985|chr4:7723787-7723788|-/T|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.3148498535156	2	458.260925	914.507297	0.15771	7.227E-05	-0.21171	-9.7019E-05	-0.054006	-2.4749E-05	458.26077357373117	70.885	0.58607	70.885	70.681	71.267	0					21	14	2	0	0	0	0.027462	1	6874	6874		45.952	15.448	1	998330			57383	8209	47344	47386	62801	62801					0.04662365177625816
TLQQNVAQL	9	Unmodified	_TLQQNVAQL_					0	0	0			REV__nc|ENSG00000126777|Q86UP2-2|KTN1	REV__nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MSMS	OvCa99_classI_Rep5	1	507.7840270996094	2	507.782556	1013.55056	1.606	0.0008155	1.1421	0.00057996	2.7481	0.0013955	507.78298851819	79.382	1.1148	79.382	78.996	80.111	0					76	27	4	0	0	0	0.28934	1	8112	8112		64.207	14.766	1	6571900	+		57384	18795	47345	47387	62802	62802					0.04432554954905754
TLQRYREL	8	Unmodified	_TLQRYREL_					0	0	0		tr|A0A553SI96|A0A553SI96_NIACIATPsynthasesubunitbetaOS=NialliacirculansOX=1397GN=atpDPE=3SV=1	tr|A0A553SI96|A0A553SI96_NIACIATPsynthasesubunitbetaOS=NialliacirculansOX=1397GN=atpDPE=3SV=1	tr|A0A553SI96|A0A553SI96_NIACIATPsynthasesubunitbetaOS=NialliacirculansOX=1397GN=atpDPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.3037719726562	2	539.803823	1077.59309	-0.23211	-0.0001253	4.2346	0.0022859	4.0025	0.0021606	539.805946354558	68.986	2.1038	68.986	68.774	70.877	0					64	51	2	0	0	0	0.028476	1	6612	6612		21.96	0	1	1934200			57385	33358	47346	47388	62803	62803					0.057399500831252226
TLQRYREL	8	Unmodified	_TLQRYREL_					0	0	0		tr|A0A553SI96|A0A553SI96_NIACIATPsynthasesubunitbetaOS=NialliacirculansOX=1397GN=atpDPE=3SV=1	tr|A0A553SI96|A0A553SI96_NIACIATPsynthasesubunitbetaOS=NialliacirculansOX=1397GN=atpDPE=3SV=1	tr|A0A553SI96|A0A553SI96_NIACIATPsynthasesubunitbetaOS=NialliacirculansOX=1397GN=atpDPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	539.803823	1077.59309	1.0543	0.00056913	-1.2396	-0.00066914	-0.18527	-0.00010001	539.8027807255662	71.659	0.44795	69.057	68.782	69.23	-2.6023	0.035361	-0.0046854	NaN	21.96	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15733			57386	33358	47346	47388							0.057399500831252226
TLQSRPHVSLK	11	Unmodified	_TLQSRPHVSLK_					0	0	0			REV__L1MB2_dup734|chr2:41391481-41393110:-|2.5038669870492565|0.0056028466714037|8.8|420.0|7|1|sense	REV__L1MB2_dup734|chr2:41391481-41393110:-|2.5038669870492565|0.0056028466714037|8.8|420.0|7|1|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3690795898438	2	633.369861	1264.72517	-4.5141	-0.0028591	3.4388	0.002178	-1.0753	-0.00068108	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.68757	1	15667	15667		33.922	8.3476	1	369460	+		57387	28408	47347	47389	62804	62804					0.1033955510006308
TLQTDEKL	8	Unmodified	_TLQTDEKL_					0	0	0			REV__ENSG00000242120|ENST00000567252|MDFIC2	REV__ENSG00000242120|ENST00000567252|MDFIC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.2303466796875	2	474.25584	946.497126	-0.044896	-2.1292E-05	-2.3286	-0.0011044	-2.3735	-0.0011256	474.2559446949513	58.607	0.60983	58.607	58.363	58.973	0					25	14	3	0	0	0	0.028476	1	5042	5042		37.159	0	1	272280	+		57388	23454	47348	47390	62805	62805					0.021737574523854164
TLQTDEKL	8	Unmodified	_TLQTDEKL_					0	0	0			REV__ENSG00000242120|ENST00000567252|MDFIC2	REV__ENSG00000242120|ENST00000567252|MDFIC2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	474.25584	946.497126	-1.3372	-0.00063415	1.3553	0.00064277	0.018164	8.6142E-06	474.25624342495996	61.288	1.5458	58.529	57.987	59.533	-2.7593	0.050842	0.0013582	NaN	56.721	61	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160840	+		57389	23454	47348	47390							0.021737574523854164
TLQVRILEP	9	Unmodified	_TLQVRILEP_					0	0	0			REV__ENSG00000205339|ENST00000379719|IPO7	REV__ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	OvCa99_classI_Rep5	1	534.8272094726562	2	534.824224	1067.63389	0.53754	0.00028749	3.2356	0.0017305	3.7732	0.002018	534.826050132395	161.11	0.95575	161.11	160.66	161.61	0					29	18	4	0	0	0	0.44248	1	18889	18889		47.96	8.7067	1	59569	+		57390	23212	47349	47391	62806	62806					0.10278291402732975
TLQVYHGLL	9	Unmodified	_TLQVYHGLL_					0	0	0		nc|ENSG00000052749|Q5JTH9-3|RRP12;ENSG00000052749|ENST00000370992|RRP12	nc|ENSG00000052749|Q5JTH9-3|RRP12	nc|ENSG00000052749|Q5JTH9-3|RRP12	MULTI-MSMS	OvCa9_classI_Rep3	3	522.2988891601562	2	522.297842	1042.58113	-0.86048	-0.00044943	0.020293	1.0599E-05	-0.84019	-0.00043883	522.2974281798174	100.54	1.3601	98.933	98.612	99.972	-1.6053					79	26	5	0	0	0	0.51865	1	6842	6842		40.778	0	1	361150			57391	1193	47350	47392	62807	62807					0.06154333339964069
TLRALIGFQ	9	Unmodified	_TLRALIGFQ_					0	0	0			REV__ENSG00000156026|ENST00000373053|MCU	REV__ENSG00000156026|ENST00000373053|MCU	MULTI-MSMS	OvCa9_classI_Rep2	2	509.80218505859375	2	509.805834	1017.59712	-0.41042	-0.00020923	-3.6368	-0.0018541	-4.0473	-0.0020633	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.6653	1	13542	13542		24.203	2.2429	1	150140	+		57392	20459	47351	47393	62808	62808					0.08902039576844345
TLRAQKSR	8	Unmodified	_TLRAQKSR_					0	0	0		ENSG00000172009|ENST00000307741|THOP1;ENST00000589087.5_1_19:2806818-2807876:+|nuORF	ENSG00000172009|ENST00000307741|THOP1;ENST00000589087.5_1_19:2806818-2807876:+|nuORF	ENSG00000172009|ENST00000307741|THOP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	481.28912353515625	2	480.290882	958.567212	-0.19692	-9.458E-05	3.0426	0.0014613	2.8457	0.0013668	480.2922797931284	93.391	1.0261	92.223	91.706	92.733	-1.168					31	19	2	0	0	0	0.028476	1	8364	8364		16.473	0	1	26956			57393	7260;14082	47352	47394	62809	62809					0.0862710063152008
TLRFLTGII	9	Unmodified	_TLRFLTGII_					0	0	0		tr|A0A553SR99|A0A553SR99_NIACISigmafactorregulatorC-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00600PE=4SV=1	tr|A0A553SR99|A0A553SR99_NIACISigmafactorregulatorC-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00600PE=4SV=1	tr|A0A553SR99|A0A553SR99_NIACISigmafactorregulatorC-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00600PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.8180541992188	2	517.32386	1032.63317	-1.7241	-0.00089193	1.6447	0.00085082	-0.079471	-4.1112E-05	517.3245752735588	146.95	0.49765	145.51	145.23	145.72	-1.4357					14	9	2	0	0	0	0.027462	1	14469	14469		20.947	0	1	9280.6			57394	34239	47353	47395	62810	62810					0.11815496753706611
TLRFPVIE	8	Unmodified	_TLRFPVIE_					0	0	0			REV__nc|ENSG00000175054|Q13535-2|ATR	REV__nc|ENSG00000175054|Q13535-2|ATR	MULTI-SECPEP	OvCa9_classI_Rep3	3	487.3060302734375	2	487.78711	973.559667	-0.093045	-4.5386E-05	1.1771	0.00057419	1.0841	0.00052881	487.78726127492416	104.48	1.1955	103.05	102.66	103.85	-1.4347					29	22	2	0	0	0	0.028476	1	7364	7364		66.429	0	1	43698	+		57395	21866	47354	47396	62811	62811					0.07182948311242399
TLRLADRDETQ	11	Unmodified	_TLRLADRDETQ_					0	0	0			REV__DPEP2|p.Q141E|1|0.54|ENSG00000167261|chr16:67992163-67992163|G/C|missense_variant	REV__DPEP2|p.Q141E|1|0.54|ENSG00000167261|chr16:67992163-67992163|G/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	439.2481689453125	3	439.896757	1316.66844	-0.34067	-0.00014986	2.8443	0.0012512	2.5037	0.0011013	439.8978287856471	52.126	0.454	48.918	48.742	49.196	-3.208					10	8	2	0	0	0	0.026113	1	3093	3093		30.569	7.191	1	20303	+		57396	16336	47355	47397	62812	62812					0.022774627528860947
TLRLFPVAI	9	Unmodified	_TLRLFPVAI_					0	0	0		ENSG00000106258|ENST00000222982|CYP3A5	ENSG00000106258|ENST00000222982|CYP3A5	ENSG00000106258|ENST00000222982|CYP3A5	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.3031616210938	2	515.326402	1028.63825	0.0094212	4.855E-06	0.43412	0.00022371	0.44354	0.00022857	515.3266162328074	97.793	0.19765	96.834	96.711	96.908	-0.95857					5	3	2	0	0	0	0.027448	1	8855	8855		44.117	14.967	1	15441			57397	2537	47356	47398	62813	62813					0.1250780061632213
TLRLQALRK	9	Unmodified	_TLRLQALRK_					0	0	0		nc|ENSG00000081913|O60346-2|PHLPP1;PHLPP1|p.Q1514Hfs*26|1|0.18|ENSG00000081913|chr18:62978815-62978816|-/ACAT|frameshift_variant;PHLPP1|p.Q1514Vfs*31|1|0.18|ENSG00000081913|chr18:62978816-62978817|-/GTGATCAAGGATCGGCCCT|frameshift_variant;ENSG00000081913|ENST00000262719|PHLPP1	nc|ENSG00000081913|O60346-2|PHLPP1	nc|ENSG00000081913|O60346-2|PHLPP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	549.812255859375	2	549.858932	1097.70331	1.4823	0.00081503	-1.9251	-0.0010585	-0.44288	-0.00024352	549.8576940260331	65.492	0.84837	62.796	62.52	63.368	-2.6958					22	16	2	0	0	0	0.027455	1	5086	5086		51.335	12.083	1	20374			57398	1667	47357	47399	62814	62814					0.15836795142172377
TLRPEVVL	8	Unmodified	_TLRPEVVL_					0	0	0			REV__nc|ENSG00000285253|Q6N043-4|ZNF280D	REV__nc|ENSG00000285253|Q6N043-4|ZNF280D	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.7883605957031	2	463.78711	925.559667	-1.0398	-0.00048224	0.81131	0.00037628	-0.22847	-0.00010596	463.7873861971096	53.027	1.1575	49.819	49.553	50.71	-3.208					41	22	2	0	0	0	0.62474	1	3219	3219		58.782	0	1	392140	+		57399	29205	47358	47400	62815	62815					0.09390948311227021
TLRPSHLVE	9	Unmodified	_TLRPSHLVE_					0	0	0			REV__nc|ENSG00000141527|Q9BXL6-2|CARD14	REV__nc|ENSG00000141527|Q9BXL6-2|CARD14	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.3157348632812	2	526.298373	1050.58219	1.141	0.0006005	-3.2209	-0.0016952	-2.0799	-0.0010947	526.2964776203653	111.83	0.87179	111.83	111.42	112.3	0					37	18	3	0	0	0	0.027462	1	12737	12737		30.504	0	1	390860	+		57400	15738	47359	47401	62816	62816					0.058925477088678235
TLRRLETVE	9	Unmodified	_TLRRLETVE_					0	0	0			REV__SAMM50|p.N436Kfs*18|1|0.18|ENSG00000100347|chr22:43990349-43990350|-/AGTCATTCTAAGCAGAGGGAACAGAATATGC|frameshift_variant	REV__SAMM50|p.N436Kfs*18|1|0.18|ENSG00000100347|chr22:43990349-43990350|-/AGTCATTCTAAGCAGAGGGAACAGAATATGC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.7848510742188	2	558.822212	1115.62987	0.38031	0.00021252	3.2593	0.0018214	3.6397	0.0020339	558.8236509646613	65.169	0.71399	65.169	64.793	65.507	0					34	17	3	0	0	0	0.027462	1	5954	5954		24.519	0	1	791710	+		57401	17405	47360	47402	62817	62817					0.07668201909041272
TLRRLLLA	8	Unmodified	_TLRRLLLA_					0	0	0			REV__ENST00000316846.2_11:65545618-65547282:-|nuORF	REV__ENST00000316846.2_11:65545618-65547282:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.7787170410156	2	478.324194	954.633835	-0.86513	-0.00041381	-0.40956	-0.0001959	-1.2747	-0.00060972	478.32380638655013	44.137	0.70377	41.13	40.891	41.595	-3.0074					24	13	3	0	0	0	0.028476	1	2197	2197		60.294	5.5293	1	43703	+		57402	23517	47361	47403	62818	62818					0.15470336193413914
TLRRPARR	8	Unmodified	_TLRRPARR_					0	0	0			REV__ENST00000397166.6_1_8:38089131-38089302:+|nuORF	REV__ENST00000397166.6_1_8:38089131-38089302:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	513.8247680664062	2	513.325591	1024.63663	1.1851	0.00060836	-2.0875	-0.0010716	-0.90239	-0.00046322	513.8246530993847	67.449	2.102	64.562	64.137	66.239	-2.8873					146	41	6	0	0	0	0.73288	1	2820	2820		35.201	0	1	2025700	+		57403	25346	47362	47404	62819	62819					0.12529604370934067
TLRRPVPL	8	Unmodified	_TLRRPVPL_					0	0	0		nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4;nc|ENSG00000128512|Q8N1I0-4|DOCK4;ENST00000486186.1_7:111368332-111379399:-|nuORF	nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.7938537597656	2	476.308544	950.602535	-0.35119	-0.00016727	-0.34127	-0.00016255	-0.69245	-0.00032982	476.30824099447744	80.891	0.49081	78.181	77.954	78.445	-2.7106					17	9	2	0	0	0	0.028476	1	6649	6649		57.811	7.7867	1	31773			57404	3882	47363	47405	62820	62820					0.12525763159328562
TLRVLDLIFY	10	Unmodified	_TLRVLDLIFY_					0	0	0		CCT3-ARHGEF11|1|fusion;nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11	CCT3-ARHGEF11|1|fusion	CCT3-ARHGEF11|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	627.2899780273438	2	626.868631	1251.72271	-0.69566	-0.00043609	-3.1374	-0.0019667	-3.833	-0.0024028	626.86682617425	117.69	1.4158	116.35	115.79	117.21	-1.3444					41	26	2	0	0	0	0.026956	1	10956	10956		42.396	8.2236	1	99561			57405	202	47364	47406	62821	62821					0.10691706642410281
TLRVLDLIFY	10	Unmodified	_TLRVLDLIFY_					0	0	0		CCT3-ARHGEF11|1|fusion;nc|ENSG00000132694|O15085|ARHGEF11;ENSG00000132694|ENST00000368194|ARHGEF11	CCT3-ARHGEF11|1|fusion	CCT3-ARHGEF11|1|fusion	MULTI-MATCH	OvCa9_classI_Rep3	3		2	626.868631	1251.72271	-0.028617	-1.7939E-05	-3.5361	-0.0022167	-3.5647	-0.0022346	626.8664501119638	117.63	0.99036	116.59	116.29	117.28	-1.0324	0.12193	-0.00030677	NaN	42.396	55	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77941			57406	202	47364	47406							0.10691706642410281
TLRVPPGSHG	10	Unmodified	_TLRVPPGSHG_					0	0	0			REV__ENSG00000204315|ENST00000375156|FKBPL	REV__ENSG00000204315|ENST00000375156|FKBPL	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.7646179199219	2	510.78289	1019.55123	-0.40505	-0.0002069	-1.6573	-0.00084653	-2.0624	-0.0010534	510.7841629139921	29.37	0.24992	29.37	29.186	29.436	0					5	4	2	0	0	0	0.026803	1	1024	1024		47.96	35	1	3174.4	+		57407	23143	47365	47407	62822	62822					0.04223394394625757
TLRVYVPCR	9	Unmodified	_TLRVYVPCR_					0	0	0		ENST00000531571.5_1_11:102960015-102962332:-|nuORF	ENST00000531571.5_1_11:102960015-102962332:-|nuORF	ENST00000531571.5_1_11:102960015-102962332:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	553.3172607421875	2	553.810593	1105.60663	-1.5208	-0.00084224	-1.4454	-0.00080047	-2.9662	-0.0016427	553.8097654292825	85.07	1.5882	82.849	82.598	84.187	-2.2204					83	31	3	0	0	0	0.027462	1	4946	4946		16.473	0.83134	1	715170			57408	13309	47366	47408	62823	62823					0.05805484590700871
TLRWQQQQV	9	Unmodified	_TLRWQQQQV_					0	0	0		ENST00000418195.1_1_3:42018516-42019344:+|nuORF	ENST00000418195.1_1_3:42018516-42019344:+|nuORF	ENST00000418195.1_1_3:42018516-42019344:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	593.819091796875	2	593.820004	1185.62546	0.65402	0.00038837	-2.045	-0.0012143	-1.3909	-0.00082597	593.8187366630715	111.96	1.8282	110.45	110.16	111.99	-1.5111					89	35	4	0	0	0	0.51865	1	10349	10349		40.778	4.3314	1	383640			57409	11632	47367	47409	62824	62824					0.04006737486133716
TLRWRWRRRCW	11	Unmodified	_TLRWRWRRRCW_					0	0	0			REV__chr12:123762550-123764343|330|17.95|0.82|4.45|+|0|DNAH10,None|1	REV__chr12:123762550-123764343|330|17.95|0.82|4.45|+|0|DNAH10,None|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.57769775390625	4	419.481023	1673.89499	0.30488	0.00012789	0.21289	8.9304E-05	0.51777	0.00021719	419.48109211424685	33.117	0.98097	33.117	32.7	33.681	0					47	19	3	0	0	0	0.026559	1	1504	1504		1.523	1.2366	1	131800	+		57410	15873	47368	47410	62825	62825					0.08499392621502011
TLSAARARL	9	Unmodified	_TLSAARARL_					0	0	0			REV__ENSG00000182253|ENST00000336292|SYNM	REV__ENSG00000182253|ENST00000336292|SYNM	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.7943115234375	2	479.793258	957.571963	0.51165	0.00024549	1.8509	0.00088803	2.3625	0.0011335	479.793899307987	113.34	1.3883	111.9	111.61	112.99	-1.4461					61	27	4	0	0	0	0.34496	1	10492	10492		57.811	4.8746	1	155500	+		57411	22274	47369	47411	62826	62826					0.0914798477426757
TLSAHHRKLS	10	Unmodified	_TLSAHHRKLS_					0	0	0			REV__ENSG00000173013|ENST00000310085|CCDC96	REV__ENSG00000173013|ENST00000310085|CCDC96	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.3119506835938	2	575.327996	1148.64144	-1.089	-0.00062654	3.343	0.0019233	2.254	0.0012968	575.3303215015834	99.733	0.51465	98.048	97.829	98.344	-1.685					15	9	2	0	0	0	0.026493	1	6710	6710		45.972	0	1	20371	+		57412	21742	47370	47412	62827	62827					0.07306443723041411
TLSAHITVVT	10	Unmodified	_TLSAHITVVT_					0	0	0		ENSG00000176253|ENST00000641904|OR4K13	ENSG00000176253|ENST00000641904|OR4K13	ENSG00000176253|ENST00000641904|OR4K13	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.2739868164062	2	521.300581	1040.58661	-1.4016	-0.00073066	-0.38849	-0.00020252	-1.7901	-0.00093318	521.3004861033588	73.319	0.24281	69.923	69.833	70.076	-3.3961					6	4	2	0	0	0	0.027021	1	5681	5681		29.15	13.508	1	8544.3			57413	7595	47371	47413	62828	62828					0.06794012131740601
TLSASATSAAM	11	Unmodified	_TLSASATSAAM_					0	0	0			REV__BRPF1|p.L103Ffs*111|1|0.05|ENSG00000156983|chr3:9734449-9734449|G/-|frameshift_variant	REV__BRPF1|p.L103Ffs*111|1|0.05|ENSG00000156983|chr3:9734449-9734449|G/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.7965393066406	2	505.744782	1009.47501	-0.1361	-6.8831E-05	-2.2644	-0.0011452	-2.4005	-0.0012141	505.74340022124255	56.559	0.4511	56.559	56.382	56.833	0					19	10	3	0	0	0	0.025453	1	4730	4730		62.107	14.45	1	236520	+		57414	15712	47372	47414	62829	62829					-0.029347902876907028
TLSASTRE	8	Unmodified	_TLSASTRE_					0	0	0			REV__ENSG00000154358|ENST00000680850|OBSCN	REV__ENSG00000154358|ENST00000680850|OBSCN	MULTI-MSMS	OvCa99_classI_Rep5	1	432.7250061035156	2	432.724707	863.43486	2.3504	0.0010171	-2.4187	-0.0010466	-0.06831	-2.956E-05	432.72357111363635	113.63	0.43219	113.63	113.53	113.97	0					13	9	2	0	0	0	0.67745	1	12960	12960		47.916	1.9636	1	209470	+		57415	20380	47373	47415	62830	62830					-0.0023196889595737957
TLSDHIALE	9	Unmodified	_TLSDHIALE_					0	0	0			REV__ENST00000487440.5_1_3:47281337-47324087:-|nuORF	REV__ENST00000487440.5_1_3:47281337-47324087:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.3059387207031	2	499.761289	997.508025	2.2301	0.0011145	-0.81344	-0.00040653	1.4166	0.00070798	499.7607000500639	96.592	0.63033	96.592	96.378	97.008	0					29	14	3	0	0	0	0.027462	1	10601	10601		16.473	0	1	1308900	+		57416	17179	47374	47416	62831	62831					0.0091715982664482
TLSDIKALI	9	Unmodified	_TLSDIKALI_					0	0	0		ENSG00000130402|ENST00000252699|ACTN4;nc|ENSG00000130402|O43707-2|ACTN4;ENST00000588618.5_1_19:39138385-39212431:+|nuORF	ENSG00000130402|ENST00000252699|ACTN4	ENSG00000130402|ENST00000252699|ACTN4	MULTI-MSMS	OvCa99_classI_Rep5	1	487.3006896972656	2	487.30005	972.585547	1.567	0.00076361	0.25277	0.00012317	1.8198	0.00088678	487.3000204178923	112.37	1.2739	112.37	111.93	113.2	0					74	27	4	0	0	0	0.022645	2	12784	12764;12784		143.89	31.806	1	1380100			57417	3986	47375	47417	62832;62833	62833					0.09815797762848888
TLSDIVVTL	9	Unmodified	_TLSDIVVTL_					0	0	0		ENST00000482926.1_1_6:42018279-42030992:+|nuORF;ENSG00000137413|ENST00000372977|TAF8;nc|ENSG00000137413|Q7Z7C8-2|TAF8;nc|ENSG00000137413|Q7Z7C8-4|TAF8	ENST00000482926.1_1_6:42018279-42030992:+|nuORF	ENST00000482926.1_1_6:42018279-42030992:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	480.7857666015625	2	480.784233	959.553913	0.98023	0.00047128	1.6242	0.0007809	2.6044	0.0012522	480.784843455015	139.79	0.85049	139.79	139.46	140.31	0					40	17	3	0	0	0	0.12365	2	16330	16309;16330		90.777	7.9894	1	133950			57418	4582	47376	47418	62834;62835	62835					0.07251805008900192
TLSDLRVYL	9	Unmodified	_TLSDLRVYL_					0	0	0		ENSG00000271303|ENST00000381962|SRXN1;ENST00000488788.2_1_20:629360-656142:-|nuORF	ENSG00000271303|ENST00000381962|SRXN1	ENSG00000271303|ENST00000381962|SRXN1	MULTI-MSMS	OvCa99_classI_Rep5	1	540.3106689453125	2	540.308406	1078.60226	2.0586	0.0011123	0.15872	8.5756E-05	2.2174	0.0011981	540.308604768976	118	1.26	118	117.7	118.96	0					86	26	4	0	0	0	0.03923	5	13518	13497;13518;13542;13566;13591		127.46	33.346	1	11603000			57419	9547	47377	47419	62836;62837;62838;62839;62840	62837					0.06610298648797652
TLSDLRVYL	9	Unmodified	_TLSDLRVYL_					0	0	0		ENSG00000271303|ENST00000381962|SRXN1;ENST00000488788.2_1_20:629360-656142:-|nuORF	ENSG00000271303|ENST00000381962|SRXN1	ENSG00000271303|ENST00000381962|SRXN1	MULTI-MSMS	OvCa99_classI_Rep5	1	540.3079223632812	2	540.308406	1078.60226	1.3861	0.00074891	2.3325	0.0012603	3.7186	0.0020092	540.3095555383816	119.31	1.271	119.31	118.96	120.23	0					57	29	2	0	0	0	0.38969	1	13657	13657		52.937	3.4952	1	798440			57420	9547	47377	47419	62841	62841					0.06610298648797652
TLSDLRVYL	9	Unmodified	_TLSDLRVYL_					0	0	0		ENSG00000271303|ENST00000381962|SRXN1;ENST00000488788.2_1_20:629360-656142:-|nuORF	ENSG00000271303|ENST00000381962|SRXN1	ENSG00000271303|ENST00000381962|SRXN1	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3080444335938	2	540.308406	1078.60226	-2.1488	-0.001161	2.6541	0.001434	0.50529	0.00027301	540.3097600180628	118.45	2.7194	118.3	117.89	120.61	-0.14755					130	54	4	0	0	0	0.12515	11	11356	11345;11350;11356;11362;11368;11376;11382;11395;11407;11413;11425		90.37	31.588	1	293380			57421	9547	47377	47419	62842;62843;62844;62845;62846;62847;62848;62849;62850;62851;62852	62844					0.06610298648797652
TLSDLRVYL	9	Unmodified	_TLSDLRVYL_					0	0	0		ENSG00000271303|ENST00000381962|SRXN1;ENST00000488788.2_1_20:629360-656142:-|nuORF	ENSG00000271303|ENST00000381962|SRXN1	ENSG00000271303|ENST00000381962|SRXN1	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3076171875	2	540.308406	1078.60226	1.25	0.00067539	-0.88154	-0.0004763	0.36846	0.00019908	540.3077955858466	119.23	3.2776	118.2	117.78	121.06	-1.0271					179	64	5	0	0	0	0.064985	14	9036	9011;9017;9023;9030;9036;9042;9048;9055;9060;9066;9073;9080;9092;9098		110.12	49.148	1	415420			57422	9547	47377	47419	62853;62854;62855;62856;62857;62858;62859;62860;62861;62862;62863;62864;62865;62866	62857					0.06610298648797652
TLSDLRVYL	9	Unmodified	_TLSDLRVYL_					0	0	0		ENSG00000271303|ENST00000381962|SRXN1;ENST00000488788.2_1_20:629360-656142:-|nuORF	ENSG00000271303|ENST00000381962|SRXN1	ENSG00000271303|ENST00000381962|SRXN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3077392578125	2	540.308406	1078.60226	-2.0627	-0.0011145	2.4092	0.0013017	0.34654	0.00018724	540.3096376945349	119.42	3.6472	118.08	117.68	121.33	-1.3444					173	70	5	0	0	0	0.13504	7	11210	11198;11210;11222;11235;11247;11260;11272		87.696	30.975	1	472280			57423	9547	47377	47419	62867;62868;62869;62870;62871;62872;62873	62868					0.06610298648797652
TLSEIKALL	9	Unmodified	_TLSEIKALL_					0	0	0		nc|ENSG00000072110|P12814-2|ACTN1;nc|ENSG00000072110|P12814|ACTN1;ENSG00000072110|ENST00000394419|ACTN1;nc|ENSG00000072110|P12814-4|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	nc|ENSG00000072110|P12814-2|ACTN1	MULTI-MSMS	OvCa99_classI_Rep5	1	494.3085021972656	2	494.307875	986.601197	1.4282	0.00070599	0.59561	0.00029441	2.0238	0.0010004	494.30789498931887	111.75	2.1635	111.75	111.33	113.5	0					121	48	3	0	0	0	0.064985	4	12773	12718;12748;12773;12796		110.12	24.767	1	869190			57424	1464	47378	47420	62874;62875;62876;62877	62876					0.10736084279915303
TLSEQHIL	8	Unmodified	_TLSEQHIL_					0	0	0			REV__ENSG00000154237|ENST00000388948|LRRK1	REV__ENSG00000154237|ENST00000388948|LRRK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.28021240234375	2	470.758549	939.502546	0.12399	5.8369E-05	-0.18457	-8.6887E-05	-0.06058	-2.8518E-05	470.75831314648116	101.53	1.1593	99.261	98.974	100.13	-2.2665					34	22	2	0	0	0	0.028476	1	9197	9197		50.025	11.218	1	100530	+		57425	20369	47379	47421	62878	62878					0.030374810348689607
TLSEQHIL	8	Unmodified	_TLSEQHIL_					0	0	0			REV__ENSG00000154237|ENST00000388948|LRRK1	REV__ENSG00000154237|ENST00000388948|LRRK1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	470.758549	939.502546	2.7248	0.0012827	-1.564	-0.00073627	1.1608	0.00054644	470.7578591662293	99.426	0.25214	99.426	99.195	99.447	0	0.14167	-0.0010302	NaN	50.025	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247920	+		57426	20369	47379	47421							0.030374810348689607
TLSEQHIL	8	Unmodified	_TLSEQHIL_					0	0	0			REV__ENSG00000154237|ENST00000388948|LRRK1	REV__ENSG00000154237|ENST00000388948|LRRK1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	470.758549	939.502546	-0.41269	-0.00019428	0.18453	8.6867E-05	-0.22817	-0.00010741	470.7585509971621	100.77	0.92029	99.166	98.946	99.866	-1.6053	-0.11835	0.00061607	NaN	50.025	34	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	101990	+		57427	20369	47379	47421							0.030374810348689607
TLSEVTNQL	9	Unmodified	_TLSEVTNQL_					0	0	0		ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	ENSG00000170145|ENST00000304987|SIK2	MULTI-MSMS	OvCa99_classI_Rep5	1	502.7679443359375	2	502.766571	1003.51859	1.4445	0.00072623	0.63008	0.00031678	2.0746	0.001043	502.76673251243506	93.371	1.3809	93.371	93.053	94.433	0					66	32	3	0	0	0	0.0080738	1	10110	10110		221.33	59.074	1	2416500			57428	7076	47380	47422	62879	62879					0.016971424811004
TLSFLDQTK	9	Unmodified	_TLSFLDQTK_					0	0	0		nc|ENSG00000168491|Q8TBZ0-2|CCDC110;ENSG00000168491|ENST00000307588|CCDC110	nc|ENSG00000168491|Q8TBZ0-2|CCDC110	nc|ENSG00000168491|Q8TBZ0-2|CCDC110	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.2813720703125	2	526.784764	1051.55498	-2.6453	-0.0013935	-3.5527	-0.0018715	-6.198	-0.003265	526.7829033828278	49.211	1.456	46.069	45.832	47.288	-3.1416					49	27	2	0	0	0	0.027462	1	2775	2775		18.262	0	1	292180			57429	6912	47381	47423	62880	62880					0.03126019377805278
TLSGWAPPQN	10	Unmodified	_TLSGWAPPQN_					0	0	0		ENST00000373068.6_3_9:130870210-130870522:+|nuORF	ENST00000373068.6_3_9:130870210-130870522:+|nuORF	ENST00000373068.6_3_9:130870210-130870522:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	534.811767578125	2	535.766906	1069.51926	-0.33644	-0.00018025	-0.060886	-3.2621E-05	-0.39733	-0.00021287	535.7669702733892	92.514	0.74685	90.511	90.291	91.037	-2.0033					24	15	2	0	0	0	0.026891	1	5856	5856		39.253	15.05	1	56413			57430	10997	47382	47424	62881	62881					-0.012720180792030078
TLSHMYLNIF	10	Unmodified	_TLSHMYLNIF_					0	0	0			REV__ENSG00000158486|ENST00000698260|DNAH3	REV__ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	OvCa99_classI_Rep5	1	619.8151245117188	2	619.815541	1237.61653	1.2434	0.00077071	-2.2544	-0.0013973	-1.0109	-0.00062658	619.8140496312382	119.72	0.71735	119.72	119.47	120.18	0					47	17	4	0	0	0	0.35465	1	13730	13730		74.255	19.479	1	1239200	+		57431	20568	47383	47425	62882	62882					0.007226278054304203
TLSIGMVPQV	10	Unmodified	_TLSIGMVPQV_					0	0	0			REV__nc|ENSG00000006118|Q24JP5-4|TMEM132A	REV__nc|ENSG00000006118|Q24JP5-4|TMEM132A	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.8328247070312	2	522.791535	1043.56852	-0.54141	-0.00028305	-0.89345	-0.00046709	-1.4349	-0.00075014	523.2909334356605	71.117	0.39486	71.117	70.994	71.389	0					11	9	2	0	0	0	0.02658	1	6854	6854		64.207	12.872	1	293820	+		57432	16410	47384	47426	62883	62883					0.048475538854063416
TLSKKRPPPPP	11	Unmodified	_TLSKKRPPPPP_					0	0	0		ASAP1|p.K992Qfs*25|1|0.06|ENSG00000153317|chr8:130060797-130060798|-/G|frameshift_variant;ENSG00000153317|ENST00000518721|ASAP1;nc|ENSG00000153317|Q9ULH1-2|ASAP1	ASAP1|p.K992Qfs*25|1|0.06|ENSG00000153317|chr8:130060797-130060798|-/G|frameshift_variant	ASAP1|p.K992Qfs*25|1|0.06|ENSG00000153317|chr8:130060797-130060798|-/G|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	609.3746948242188	2	609.371872	1216.72919	0.56552	0.00034461	2.5174	0.0015341	3.083	0.0018787	609.3731861911076	164.45	1.5748	164.45	163.72	165.3	0					107	58	2	0	0	0	0.72511	1	19162	19162		14.137	0.68308	1	34749			57433	118	47385	47427	62884	62884					0.12949644593800258
TLSKNLIDI	9	Unmodified	_TLSKNLIDI_					0	0	0			REV__ENST00000470811.5_1_3:156544101-156697065:+|nuORF	REV__ENST00000470811.5_1_3:156544101-156697065:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.8030090332031	2	508.802957	1015.59136	-0.95572	-0.00048627	-1.8442	-0.00093835	-2.8	-0.0014246	508.8023086392608	51.329	1.0177	48.156	47.256	48.274	-3.1734					43	19	4	0	0	0	0.37135	1	3011	3011		54.776	0	1	375320	+		57434	22976	47386	47428	62885	62885					0.08418896274520193
TLSLSSPQL	9	Unmodified	_TLSLSSPQL_					0	0	0		ENST00000505457.1_1_5:6749703-6750667:+|nuORF;ENST00000514410.1_1_5:6750532-6751388:+|nuORF;ENST00000514697.1_1_5:6746314-6755055:+|nuORF;nc|ENSG00000112941|Q5XG87-2|TENT4A;ENSG00000112941|ENST00000230859|TENT4A	ENST00000505457.1_1_5:6749703-6750667:+|nuORF	ENST00000505457.1_1_5:6749703-6750667:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	473.2668762207031	2	473.266207	944.517862	0.63881	0.00030233	1.9894	0.0009415	2.6282	0.0012438	473.2669067178202	81.181	0.70286	81.181	80.91	81.613	0					33	16	3	0	0	0	0.31747	1	8360	8360		60.972	4.2509	1	1062700			57435	2938	47387	47429	62886	62886					0.04338347832049294
TLSQLVDLI	9	Unmodified	_TLSQLVDLI_					0	0	0			REV__DOCK3|p.K1465Pfs*18|1|0.29|ENSG00000088538|chr3:51356230-51356231|-/TCCCCTCACCTTTCACACACAGCTTCCTTGGGGACCA|frameshift_variant	REV__DOCK3|p.K1465Pfs*18|1|0.29|ENSG00000088538|chr3:51356230-51356231|-/TCCCCTCACCTTTCACACACAGCTTCCTTGGGGACCA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	501.2976989746094	2	501.297507	1000.58046	-1.7009	-0.00085264	1.4294	0.00071655	-0.27147	-0.00013609	501.29808755011607	120.33	1.4803	120.16	119.84	121.32	-0.17137					84	29	5	0	0	0	0.16562	1	11609	11609		82.241	2.7895	1	488720	+		57436	16329	47388	47430	62887	62887					0.08019493900224006
TLSRLPAEP	9	Unmodified	_TLSRLPAEP_					0	0	0			REV__ENST00000298743.8_1_9:89560378-89560579:-|nuORF	REV__ENST00000298743.8_1_9:89560378-89560579:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.3208312988281	2	492.279649	982.544745	0.056713	2.7919E-05	0.74499	0.00036674	0.8017	0.00039466	492.2790553718645	57.796	0.5896	57.796	57.48	58.069	0					20	13	3	0	0	0	0.027402	1	4867	4867		31.53	0	1	483080	+		57437	24215	47389	47431	62888	62888					0.05277456443241135
TLSRSIPEL	9	Unmodified	_TLSRSIPEL_					0	0	0		nc|ENSG00000135439|Q99490-2|AGAP2;nc|ENSG00000135439|Q99490|AGAP2;ENSG00000135439|ENST00000547588|AGAP2	nc|ENSG00000135439|Q99490-2|AGAP2	nc|ENSG00000135439|Q99490-2|AGAP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.819580078125	2	508.292756	1014.57096	1.2677	0.00064439	1.1532	0.00058616	2.4209	0.0012305	508.29306834746137	79.14	0.44526	79.14	78.83	79.276	0					15	10	2	0	0	0	0.027462	1	8060	8060		39.253	20.928	1	286990			57438	4381	47390	47432	62889	62889					0.06425725614712974
TLSSFVPPPP	10	Unmodified	_TLSSFVPPPP_					0	0	0		ENST00000556508.5_1_14:105362884-105363034:+|nuORF	ENST00000556508.5_1_14:105362884-105363034:+|nuORF	ENST00000556508.5_1_14:105362884-105363034:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.289794921875	2	521.2844	1040.55425	-0.45646	-0.00023795	-4.1853	-0.0021817	-4.6418	-0.0024197	521.7828194830162	57.116	0.13165	57.116	57.048	57.18	0					4	2	2	0	0	0	0.026802	1	4787	4787		42.396	15.703	1	37493			57439	13661	47391	47433	62890	62890					0.0355922472876955
TLSSPKPLTL	10	Unmodified	_TLSSPKPLTL_					0	0	0			REV__ENST00000479871.1_1_9:116169653-116169776:-|nuORF	REV__ENST00000479871.1_1_9:116169653-116169776:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	528.819580078125	2	528.818607	1055.62266	-1.152	-0.00060918	1.1681	0.00061773	0.016157	8.544E-06	528.8190456843956	137.71	0.85484	137.48	137.27	138.13	-0.22697					33	17	3	0	0	0	0.64697	1	13720	13720		36.447	3.6343	1	54481	+		57440	26444	47392	47434	62891	62891					0.09707469308614236
TLSSVTSARAL	11	Unmodified	_TLSSVTSARAL_					0	0	0		ENST00000417453.5_1_11:124623544-124624532:-|nuORF;ENST00000485116.5_1_11:124623544-124626668:-|nuORF;ENSG00000149564|ENST00000278927|ESAM	ENST00000417453.5_1_11:124623544-124624532:-|nuORF	ENST00000417453.5_1_11:124623544-124624532:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.8108520507812	2	553.31422	1104.61389	0.31481	0.00017419	-1.0123	-0.00056013	-0.69751	-0.00038594	553.3135170315201	105.26	0.39747	104.82	104.6	105	-0.43642					17	7	3	0	0	0	0.025332	1	9774	9774		41.427	0	1	212090			57441	5472	47393	47435	62892	62892					0.06576495672129568
TLSTEFLLAAI	11	Unmodified	_TLSTEFLLAAI_					0	0	0			REV__nc|ENSG00000178460|Q4G0Z9-3|MCMDC2	REV__nc|ENSG00000178460|Q4G0Z9-3|MCMDC2	MULTI-MSMS	OvCa99_classI_Rep5	1	589.841796875	2	589.836997	1177.65944	1.45	0.00085525	4.3555	0.0025691	5.8055	0.0034243	589.839622964224	147.62	0.57812	147.62	147.31	147.88	0					19	11	2	0	0	0	0.3578	1	17264	17264		64.207	5.9773	1	171430	+		57442	22060	47394	47436	62893	62893					0.0777172113450888
TLSTVISKV	9	Unmodified	_TLSTVISKV_					0	0	0		MGA|p.D2061Vfs*3|1|0.09|ENSG00000174197|chr15:41749788-41749789|-/T|frameshift_variant;MGA|p.D2295Tfs*40|1|0.55|ENSG00000174197|chr15:41750489-41750489|T/-|frameshift_variant;ENSG00000174197|ENST00000703841|MGA	MGA|p.D2061Vfs*3|1|0.09|ENSG00000174197|chr15:41749788-41749789|-/T|frameshift_variant	MGA|p.D2061Vfs*3|1|0.09|ENSG00000174197|chr15:41749788-41749789|-/T|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	474.2931823730469	2	474.292225	946.569897	2.382	0.0011297	0.12056	5.7178E-05	2.5025	0.0011869	474.2922791028413	82.607	0.64336	82.607	82.222	82.865	0					36	14	3	0	0	0	0.16562	1	8557	8557		82.241	0	1	1176500			57443	7446	47395	47437	62894	62894					0.09447511245809892
TLSTVISKV	9	Unmodified	_TLSTVISKV_					0	0	0		MGA|p.D2061Vfs*3|1|0.09|ENSG00000174197|chr15:41749788-41749789|-/T|frameshift_variant;MGA|p.D2295Tfs*40|1|0.55|ENSG00000174197|chr15:41750489-41750489|T/-|frameshift_variant;ENSG00000174197|ENST00000703841|MGA	MGA|p.D2061Vfs*3|1|0.09|ENSG00000174197|chr15:41749788-41749789|-/T|frameshift_variant	MGA|p.D2061Vfs*3|1|0.09|ENSG00000174197|chr15:41749788-41749789|-/T|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	474.292225	946.569897	-1.0437	-0.00049504	2.3838	0.0011306	1.34	0.00063557	474.29362888646324	84.126	0.72659	82.58	82.223	82.95	-1.5462	-0.061644	0.0019431	NaN	82.241	30	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24478			57444	7446	47395	47437							0.09447511245809892
TLSTVISKV	9	Unmodified	_TLSTVISKV_					0	0	0		MGA|p.D2061Vfs*3|1|0.09|ENSG00000174197|chr15:41749788-41749789|-/T|frameshift_variant;MGA|p.D2295Tfs*40|1|0.55|ENSG00000174197|chr15:41750489-41750489|T/-|frameshift_variant;ENSG00000174197|ENST00000703841|MGA	MGA|p.D2061Vfs*3|1|0.09|ENSG00000174197|chr15:41749788-41749789|-/T|frameshift_variant	MGA|p.D2061Vfs*3|1|0.09|ENSG00000174197|chr15:41749788-41749789|-/T|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	474.292225	946.569897	-0.29656	-0.00014066	0.23599	0.00011193	-0.060577	-2.8731E-05	474.2922083142172	84.958	1.0345	82.738	82.251	83.285	-2.2204	0.09648	-9.4224E-05	NaN	82.241	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21976			57445	7446	47395	47437							0.09447511245809892
TLSVIRDYL	9	Unmodified	_TLSVIRDYL_					0	0	0		VPS11|p.H291Tfs*36|1|0.04|ENSG00000160695|chr11:119081155-119081155|C/-|frameshift_variant;nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	VPS11|p.H291Tfs*36|1|0.04|ENSG00000160695|chr11:119081155-119081155|C/-|frameshift_variant	VPS11|p.H291Tfs*36|1|0.04|ENSG00000160695|chr11:119081155-119081155|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	540.3125	2	540.308406	1078.60226	2.0586	0.0011123	0.15872	8.5756E-05	2.2174	0.0011981	540.308604768976	118	1.26	118	117.7	118.96	0					86	26	4	0	0	0	0.16562	1	13614	13614		82.241	2.5279	1	11603000			57446	6082	47396	47438	62895	62895					0.0661029864882039
TLSVIRDYL	9	Unmodified	_TLSVIRDYL_					0	0	0		VPS11|p.H291Tfs*36|1|0.04|ENSG00000160695|chr11:119081155-119081155|C/-|frameshift_variant;nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	VPS11|p.H291Tfs*36|1|0.04|ENSG00000160695|chr11:119081155-119081155|C/-|frameshift_variant	VPS11|p.H291Tfs*36|1|0.04|ENSG00000160695|chr11:119081155-119081155|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	540.3075561523438	2	540.308406	1078.60226	-2.1488	-0.001161	2.6541	0.001434	0.50529	0.00027301	540.3097600180628	118.45	2.7194	118.3	117.89	120.61	-0.14755					130	54	4	0	0	0	0.14998	1	11418	11418		84.916	5.2029	1	293380			57447	6082	47396	47438	62896	62896					0.0661029864882039
TLTAPLYNT	9	Unmodified	_TLTAPLYNT_					0	0	0		ENST00000479384.1_1_4:56308597-56309892:-|nuORF;ENST00000511124.1_1_4:56304552-56315592:-|nuORF;ENSG00000134852|ENST00000513440|CLOCK	ENST00000479384.1_1_4:56308597-56309892:-|nuORF	ENST00000479384.1_1_4:56308597-56309892:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.2710876464844	2	497.266207	992.517862	1.9989	0.00099398	-0.29511	-0.00014675	1.7038	0.00084723	497.2656702756088	106.09	0.92368	106.09	105.7	106.63	0					25	20	2	0	0	0	0.027461	1	11978	11978		32.812	3.6629	1	162550			57448	4338	47397	47439	62897	62897					0.021303478320305658
TLTEPVIRGLL	11	Unmodified	_TLTEPVIRGLL_					0	0	0		nc|ENSG00000066027|Q15172-2|PPP2R5A;ENSG00000066027|ENST00000261461|PPP2R5A	nc|ENSG00000066027|Q15172-2|PPP2R5A	nc|ENSG00000066027|Q15172-2|PPP2R5A	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3729248046875	2	606.371538	1210.72852	-2.0217	-0.0012259	-1.2081	-0.00073258	-3.2298	-0.0019585	606.3706888805716	149.57	2.6994	148.14	147.52	150.22	-1.4344					165	58	4	0	0	0	0.72466	1	14860	14860		19.997	0.89325	1	304910			57449	1340	47398	47440	62898	62898					0.13158805154102993
TLTFPHTL	8	Unmodified	_TLTFPHTL_					0	0	0			REV__ENST00000444995.7_1_22:25771803-25801278:-|nuORF	REV__ENST00000444995.7_1_22:25771803-25801278:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.2574157714844	2	465.258185	928.501818	-1.0666	-0.00049622	-2.3851	-0.0011097	-3.4517	-0.0016059	465.2566087480938	54.223	1.6375	50.976	50.212	51.85	-3.2474					58	31	3	0	0	0	0.65582	1	3359	3359		52.299	2.8576	1	179000	+		57450	25883	47399	47441	62899	62899					0.03470686385821864
TLTFPHTL	8	Unmodified	_TLTFPHTL_					0	0	0			REV__ENST00000444995.7_1_22:25771803-25801278:-|nuORF	REV__ENST00000444995.7_1_22:25771803-25801278:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	465.258185	928.501818	-1.1925	-0.00055484	-3.0928	-0.0014389	-4.2853	-0.0019938	465.2564999076275	54.104	1.3453	51.29	50.727	52.072	-2.8139	0.15721	-0.00024211	NaN	52.299	34	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35601	+		57451	25883	47399	47441							0.03470686385821864
TLTGITTKVL	10	Unmodified	_TLTGITTKVL_					0	0	0		tr|A0A7D6VNM8|A0A7D6VNM8_9CLOTUDP-N-acetylglucosamine2-epimerase(non-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=wecBPE=3SV=1	tr|A0A7D6VNM8|A0A7D6VNM8_9CLOTUDP-N-acetylglucosamine2-epimerase(non-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=wecBPE=3SV=1	tr|A0A7D6VNM8|A0A7D6VNM8_9CLOTUDP-N-acetylglucosamine2-epimerase(non-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=wecBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.3125610351562	2	523.826432	1045.63831	-0.55292	-0.00028963	2.1814	0.0011427	1.6285	0.00085305	523.8274989044672	98.63	0.96281	96.251	95.675	96.638	-2.3786					24	18	2	0	0	0	0.027088	1	8800	8800		14.137	0	1	32336			57452	34717	47400	47442	62900	62900					0.11731755825667278
TLTGNNRIN	9	Unmodified	_TLTGNNRIN_					0	0	0		nc|ENSG00000186075|Q6X784-2|ZPBP2;ENSG00000186075|ENST00000348931|ZPBP2	nc|ENSG00000186075|Q6X784-2|ZPBP2	nc|ENSG00000186075|Q6X784-2|ZPBP2	MULTI-SECPEP	OvCa9_classI_Rep3	3	502.2882080078125	2	501.76998	1001.52541	-1.4179	-0.00071144	-1.4752	-0.0007402	-2.893	-0.0014516	501.7710494582702	84.67	0.44518	82.409	82.258	82.704	-2.261					14	8	2	0	0	0	0.027453	1	4952	4952		37.812	11.119	1	17218			57453	8311	47401	47443	62901	62901					0.02470500152344357
TLTGRLPT	8	Unmodified	_TLTGRLPT_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	429.56365966796875	2	429.75581	857.497067	2.0473	0.00087985	-2.2226	-0.00095516	-0.17522	-7.5303E-05	429.7543839892463	85.679	1.5719	83.033	82.561	84.133	-2.6463					52	31	3	0	0	0	0.028476	1	7348	7348		37.159	5.2042	1	112560			57454	3189	47402	47444	62902	62902					0.06261802243022885
TLTGRLPT	8	Unmodified	_TLTGRLPT_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MATCH	OvCa9_classI_Rep2	2		2	429.75581	857.497067	-1.7192	-0.00073882	2.0082	0.00086305	0.28907	0.00012423	429.7565253692143	84.654	1.1082	83.108	82.588	83.696	-1.5462	0.1223	0.00060873	NaN	37.159	40	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55099			57455	3189	47402	47444							0.06261802243022885
TLTGRLPT	8	Unmodified	_TLTGRLPT_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MATCH	OvCa9_classI_Rep3	3		2	429.75581	857.497067	-0.54743	-0.00023526	1.044	0.00044867	0.49658	0.00021341	429.7561159804674	85.036	1.1882	82.816	82.348	83.536	-2.2204	-0.16953	-0.00022003	NaN	37.159	39	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146680			57456	3189	47402	47444							0.06261802243022885
TLTIHTTGMDL	11	Unmodified	_TLTIHTTGMDL_					0	0	0			REV__ENST00000580871.5_1_17:30358457-30363256:+|nuORF	REV__ENST00000580871.5_1_17:30358457-30363256:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	601.8065795898438	2	601.807913	1201.60127	-1.4066	-0.00084648	-1.3552	-0.00081559	-2.7618	-0.0016621	601.8068315926228	120.92	0.93755	120.72	120.46	121.4	-0.19719					39	18	3	0	0	0	0.67529	1	11677	11677		37.812	0	1	96859	+		57457	22484	47403	47445	62903	62903					0.008537162176025959
TLTKRITE	8	Unmodified	_TLTKRITE_					0	0	0			REV__tr|A0A7D7A2K4|A0A7D7A2K4_9CLOTDUF488domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08860PE=4SV=1	REV__tr|A0A7D7A2K4|A0A7D7A2K4_9CLOTDUF488domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08860PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	481.2908020019531	2	481.287474	960.560395	2.3982	0.0011542	4.1733	0.0020085	6.5715	0.0031628	481.28928832665514	102.23	1.0671	102.23	101.87	102.93	0					57	24	4	0	0	0	0.64026	1	11398	11398		55.504	2.5675	1	4728200	+		57458	32541	47404	47446	62904	62904					0.07853742960287491
TLTKVPPNVV	10	Unmodified	_TLTKVPPNVV_					0	0	0			REV__UBASH3A|p.L636V|1|0.05|ENSG00000160185|chr21:42447114-42447114|T/G|missense_variant	REV__UBASH3A|p.L636V|1|0.05|ENSG00000160185|chr21:42447114-42447114|T/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.2578735351562	2	534.326599	1066.63865	-0.8796	-0.00046999	0.44982	0.00024035	-0.42978	-0.00022964	534.3266273349243	107.27	0.63694	106.96	106.67	107.31	-0.30836					27	12	3	0	0	0	0.02663	1	10032	10032		60.118	23.672	1	90860	+		57459	32743	47405	47447	62905	62905					0.10799175545503203
TLTKVPPNVV	10	Unmodified	_TLTKVPPNVV_					0	0	0			REV__UBASH3A|p.L636V|1|0.05|ENSG00000160185|chr21:42447114-42447114|T/G|missense_variant	REV__UBASH3A|p.L636V|1|0.05|ENSG00000160185|chr21:42447114-42447114|T/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	534.2588500976562	2	534.326599	1066.63865	0.83993	0.0004488	-1.3075	-0.00069864	-0.46758	-0.00024984	534.3257548828939	108.07	0.72501	106.88	106.64	107.36	-1.1978					34	13	3	0	0	0	0.026602	1	7699	7699		56.434	6.9922	1	110430	+		57460	32743	47405	47447	62906	62906					0.10799175545503203
TLTNFKLKF	9	Unmodified	_TLTNFKLKF_					0	0	0		ENSG00000196132|ENST00000328439|MYT1;nc|ENSG00000196132|Q01538-2|MYT1	ENSG00000196132|ENST00000328439|MYT1	ENSG00000196132|ENST00000328439|MYT1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.8464965820312	2	556.329142	1110.64373	0.96746	0.00053822	-4.3429	-0.0024161	-3.3755	-0.0018779	556.3270128957073	111.59	0.47391	110.08	109.84	110.32	-1.5111					13	8	2	0	0	0	0.027462	1	10278	10278		18.324	1.8513	1	15061			57461	8567	47406	47448	62907	62907					0.09283479408145467
TLTNFKLKF	9	Unmodified	_TLTNFKLKF_					0	0	0		ENSG00000196132|ENST00000328439|MYT1;nc|ENSG00000196132|Q01538-2|MYT1	ENSG00000196132|ENST00000328439|MYT1	ENSG00000196132|ENST00000328439|MYT1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	556.329142	1110.64373	0.56143	0.00031234	-4.305	-0.002395	-3.7436	-0.0020827	556.3265382961011	111.05	0.44545	109.95	109.8	110.25	-1.1038	-0.066033	2.6502E-05	NaN	18.324	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9006			57462	8567	47406	47448							0.09283479408145467
TLTNNFVDI	9	Unmodified	_TLTNNFVDI_					0	0	0		tr|A0A7D6VR58|A0A7D6VR58_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04190PE=4SV=1	tr|A0A7D6VR58|A0A7D6VR58_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04190PE=4SV=1	tr|A0A7D6VR58|A0A7D6VR58_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04190PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.2831420898438	2	518.769114	1035.52368	0.91785	0.00047615	4.3802	0.0022723	5.2981	0.0027485	518.7711423248902	68.02	0.29034	64.53	64.284	64.574	-3.4902					9	5	2	0	0	0	0.027247	1	5000	5000		79.713	19.594	1	13043			57463	34897	47407	47449	62908	62908					0.007334463437246086
TLTNVQAQI	9	Unmodified	_TLTNVQAQI_					0	0	0			REV__SNTA1|p.Q408Hfs*30|1|0.13|ENSG00000101400|chr20:33410148-33410149|-/G|frameshift_variant	REV__SNTA1|p.Q408Hfs*30|1|0.13|ENSG00000101400|chr20:33410148-33410149|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.79583740234375	2	494.277106	986.53966	0.24787	0.00012252	-0.28748	-0.00014209	-0.03961	-1.9578E-05	494.27679720512646	59.428	0.64188	56.036	55.705	56.347	-3.392					27	12	3	0	0	0	0.027462	1	4000	4000		45.952	3.4775	1	58775	+		57464	17499	47408	47450	62909	62909					0.04585152580614249
TLTNVQAQI	9	Unmodified	_TLTNVQAQI_					0	0	0			REV__SNTA1|p.Q408Hfs*30|1|0.13|ENSG00000101400|chr20:33410148-33410149|-/G|frameshift_variant	REV__SNTA1|p.Q408Hfs*30|1|0.13|ENSG00000101400|chr20:33410148-33410149|-/G|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	494.277106	986.53966	-0.035785	-1.7688E-05	0.10382	5.1316E-05	0.068035	3.3628E-05	494.27734968199405	58.858	0.80929	56.078	55.537	56.347	-2.7801	0.020904	0.00020256	NaN	37.159	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17581	+		57465	17499	47408	47450							0.04585152580614249
TLTRKSKSVQL	11	Unmodified	_TLTRKSKSVQL_					0	0	0			REV__nc|ENSG00000143061|O75054-2|IGSF3	REV__nc|ENSG00000143061|O75054-2|IGSF3	MULTI-MSMS	OvCa9_classI_Rep2	2	420.9276123046875	3	420.925988	1259.75613	-0.40847	-0.00017194	3.4836	0.0014663	3.0751	0.0012944	420.92744774972056	69.031	2.0508	66.41	66.118	68.168	-2.6203					127	40	5	0	0	0	0.57194	1	5482	5482		47.228	1.3196	1	1205300	+		57466	19812	47409	47451	62910	62910					0.136647084143533
TLTRLLLLL	9	Unmodified	_TLTRLLLLL_					0	0	0			REV__ENST00000332780.3_1_3:49213230-49213359:+|nuORF	REV__ENST00000332780.3_1_3:49213230-49213359:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	528.3648681640625	2	528.362985	1054.71142	0.60322	0.00031872	1.1054	0.00058404	1.7086	0.00090276	528.363382275887	159.06	1.8145	159.06	158.69	160.51	0					87	36	4	0	0	0	0.40667	2	18670	18622;18670		51.335	8.9393	1	385540	+		57467	24550	47410	47452	62911;62912	62912					0.18624929338966467
TLTRRRTRMRR	11	Unmodified	_TLTRRRTRMRR_					0	0	0		ENST00000282570.3_1_2:70057088-70064689:+|nuORF	ENST00000282570.3_1_2:70057088-70064689:+|nuORF	ENST00000282570.3_1_2:70057088-70064689:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.6337890625	3	501.635548	1501.88481	-6.9477	-0.0034852	3.9343	0.0019736	-3.0135	-0.0015117	501.6376473335916	163.82	2.1567	162.19	160.45	162.61	-1.6336					144	60	3	0	0	0	0.7252	1	16132	16132		12.957	2.8536	1	101620			57468	10060	47411	47453	62913	62913					0.15394784896261626
TLTTDSTETV	10	Unmodified	_TLTTDSTETV_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	OvCa9_classI_Rep3	3	534.2588500976562	2	534.258776	1066.503	0.83747	0.00044743	-0.082115	-4.3871E-05	0.75535	0.00040355	534.2586390509219	107.92	2.3424	106.73	106.27	108.61	-1.1978					105	44	4	0	0	0	0.55359	1	7699	7699		47.657	1.7054	1	568740	+		57469	22219	47412	47454	62914	62914					-0.027591888265988018
TLTTDSTETV	10	Unmodified	_TLTTDSTETV_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.2605590820312	2	534.258776	1066.503	-2.4566	-0.0013125	2.9638	0.0015834	0.50719	0.00027097	534.2602325774062	108.5	2.1566	106.78	106.37	108.52	-1.7256					88	41	3	0	0	0	0.48198	2	9917	9917;9927		56.721	8.8055	1	501350	+		57470	22219	47412	47454	62915;62916	62915					-0.027591888265988018
TLTTHALLH	9	Unmodified	_TLTTHALLH_					0	0	0			REV__nc|ENSG00000114993|Q9BST9-3|RTKN	REV__nc|ENSG00000114993|Q9BST9-3|RTKN	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.82513427734375	2	503.787641	1005.56073	0.29522	0.00014873	-1.5848	-0.0007984	-1.2896	-0.00064967	503.78712194775625	73.862	0.30537	73.862	73.678	73.983	0					9	7	2	0	0	0	0.027462	1	7280	7280		12.207	0	1	281970	+		57471	18213	47413	47455	62917	62917					0.058171626801254206
TLTVVCCFLL	10	Unmodified	_TLTVVCCFLL_					0	0	0			REV__ENST00000522600.1_1_8:23083357-23085674:+|nuORF	REV__ENST00000522600.1_1_8:23083357-23085674:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	556.2991333007812	2	556.298139	1110.58172	1.4001	0.0007789	-3.0688	-0.0017072	-1.6687	-0.0009283	556.2962468429479	150.2	1.8589	150.2	149.7	151.55	0					101	36	5	0	0	0	0.56767	1	17553	17553		45.952	0	1	1762000	+		57472	26815	47414	47456	62918	62918					0.030856686731340233
TLVADSHLI	9	Unmodified	_TLVADSHLI_					0	0	0			REV__nc|ENSG00000187908|Q9UGM3-3|DMBT1	REV__nc|ENSG00000187908|Q9UGM3-3|DMBT1	MULTI-SECPEP	OvCa9_classI_Rep2	2	485.30780029296875	2	484.7742	967.533846	0.10568	5.1231E-05	-0.2349	-0.00011387	-0.12922	-6.2643E-05	484.77393608568326	107.85	1.1282	107.62	107.39	108.52	-0.22498					35	22	2	0	0	0	0.027462	1	10075	10075		16.473	0	1	85412	+		57473	29062	47415	47457	62919	62919					0.04878054068944948
TLVAFRVGEHL	11	Unmodified	_TLVAFRVGEHL_					0	0	0		tr|A0A7D6ZJP4|A0A7D6ZJP4_9CLOTCation-translocatingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09190PE=4SV=1	tr|A0A7D6ZJP4|A0A7D6ZJP4_9CLOTCation-translocatingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09190PE=4SV=1	tr|A0A7D6ZJP4|A0A7D6ZJP4_9CLOTCation-translocatingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09190PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.5710144042969	3	414.571545	1240.69281	0.04639	1.9232E-05	-2.8879	-0.0011972	-2.8415	-0.001178	414.5702589986125	20.778	1.7206	19.439	18.803	20.523	-1.3386					74	34	4	0	0	0	0.71498	1	103	103		16.53	0	1	188380			57474	35648	47416	47458	62920	62920					0.08208767697101393
TLVDEVFRI	9	Unmodified	_TLVDEVFRI_					0	0	0		ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2	ENSG00000117748|ENST00000373912|RPA2	ENSG00000117748|ENST00000373912|RPA2	MULTI-MSMS	OvCa99_classI_Rep5	1	546.3093872070312	2	546.308406	1090.60226	0.96724	0.00052841	0.97034	0.0005301	1.9376	0.0010585	546.3088947594271	132.63	1.9213	132.63	132.23	134.15	0					100	40	5	0	0	0	0.03923	3	15410	15410;15434;15460		127.46	45.157	1	3254800			57475	3277	47417	47459	62921;62922;62923	62921					0.06058298648804339
TLVDEVFRI	9	Unmodified	_TLVDEVFRI_					0	0	0		ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2	ENSG00000117748|ENST00000373912|RPA2	ENSG00000117748|ENST00000373912|RPA2	MULTI-SECPEP	OvCa9_classI_Rep2	2	546.8594360351562	2	546.308406	1090.60226	0.4224	0.00023076	-1.3003	-0.00071036	-0.87789	-0.0004796	546.3075818804031	132.15	1.3726	131.93	131.54	132.92	-0.22696					63	27	3	0	0	0	0.027453	1	13044	13044		54.776	7.119	1	122140			57476	3277	47417	47459	62924	62924					0.06058298648804339
TLVDEVFRI	9	Unmodified	_TLVDEVFRI_					0	0	0		ENSG00000117748|ENST00000373912|RPA2;nc|ENSG00000117748|P15927-2|RPA2;nc|ENSG00000117748|P15927-3|RPA2	ENSG00000117748|ENST00000373912|RPA2	ENSG00000117748|ENST00000373912|RPA2	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.307373046875	2	546.308406	1090.60226	3.182	0.0017383	-4.0989	-0.0022392	-0.91691	-0.00050092	546.3060263921274	133.26	1.2737	131.73	131.41	132.69	-1.5257					71	25	4	0	0	0	0.2784	1	12848	12848		65.465	28.306	1	187220			57477	3277	47417	47459	62925	62925					0.06058298648804339
TLVDFPLHL	9	Unmodified	_TLVDFPLHL_					0	0	0		MADD|p.F796Lfs*31|1|0.11|ENSG00000110514|chr11:47285167-47285168|-/TCTGTCGCCCAGGCTAGAGCGC|frameshift_variant;nc|ENSG00000110514|Q8WXG6-6|MADD;nc|ENSG00000110514|Q8WXG6-8|MADD;nc|ENSG00000110514|Q8WXG6-5|MADD;nc|ENSG00000110514|Q8WXG6-4|MADD;nc|ENSG00000110514|Q8WXG6-7|MADD;nc|ENSG00000110514|Q8WXG6-3|MADD;nc|ENSG00000110514|Q8WXG6-2|MADD;nc|ENSG00000110514|Q8WXG6|MADD;ENSG00000110514|ENST00000706887|MADD	MADD|p.F796Lfs*31|1|0.11|ENSG00000110514|chr11:47285167-47285168|-/TCTGTCGCCCAGGCTAGAGCGC|frameshift_variant	MADD|p.F796Lfs*31|1|0.11|ENSG00000110514|chr11:47285167-47285168|-/TCTGTCGCCCAGGCTAGAGCGC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	527.80126953125	2	527.800217	1053.58588	1.483	0.00078275	0.77026	0.00040655	2.2533	0.0011893	527.8004333249929	138.14	1.4486	138.14	137.82	139.27	0					79	30	4	0	0	0	0.071436	1	16119	16119		106.42	45.443	1	986900			57478	2781	47418	47460	62926	62926					0.06123217482695509
TLVEDCVKV	9	Unmodified	_TLVEDCVKV_					0	0	0		ENSG00000149311|ENST00000675843|ATM;ENST00000524792.5_1_11:108158320-108236232:+|nuORF	ENSG00000149311|ENST00000675843|ATM	ENSG00000149311|ENST00000675843|ATM	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.5682373046875	2	503.267893	1004.52123	-0.21897	-0.0001102	-0.13876	-6.9834E-05	-0.35773	-0.00018004	503.26778022059676	56.431	0.3623	56.431	56.261	56.623	0					14	8	2	0	0	0	0.027441	1	4682	4682		25.574	9.9322	1	320800			57479	5455	47419	47461	62927	62927					0.01915274614395912
TLVFPVALL	9	Unmodified	_TLVFPVALL_					0	0	0			REV__ENSG00000135220|ENST00000251566|UGT2A3	REV__ENSG00000135220|ENST00000251566|UGT2A3	MULTI-MSMS	OvCa9_classI_Rep3	3	486.8094177246094	2	486.810054	971.605554	-0.096422	-4.6939E-05	0.11474	5.5858E-05	0.018322	8.9192E-06	486.80997360124303	130.23	1.3225	129.12	128.88	130.21	-1.1121					55	26	3	0	0	0	0.61208	1	10382	10382		30.504	2.6214	1	142420	+		57480	19266	47420	47462	62928	62928					0.11861593493460987
TLVLHYKEL	9	Unmodified	_TLVLHYKEL_					0	0	0			REV__ENSG00000157856|ENST00000288710|DRC1	REV__ENSG00000157856|ENST00000288710|DRC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.35009765625	2	558.326599	1114.63865	1.8043	0.0010074	-0.26978	-0.00015062	1.5345	0.00085677	558.3265623580957	147.33	0.39493	147.33	147.11	147.5	0					13	7	2	0	0	0	0.027462	1	17228	17228		21.96	0	1	64552	+		57481	20537	47421	47463	62929	62929					0.08591175545507213
TLVLQSLIP	9	Unmodified	_TLVLQSLIP_					0	0	0			REV__ENST00000415494.1_1_X:79965525-79965963:+|nuORF	REV__ENST00000415494.1_1_X:79965525-79965963:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.2862854003906	2	492.310418	982.606283	1.4638	0.00072063	-1.8376	-0.00090466	-0.37383	-0.00018404	492.30937834073904	112.47	1.7326	111.39	110.77	112.51	-1.0753					80	34	4	0	0	0	0.027433	1	8202	8202		51.335	0	1	297780	+		57482	25530	47422	47464	62930	62930					0.11428388142508084
TLVLVGRALL	10	Unmodified	_TLVLVGRALL_					0	0	0			REV__ENSG00000074181|ENST00000263388|NOTCH3	REV__ENSG00000074181|ENST00000263388|NOTCH3	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3172607421875	2	527.852784	1053.69102	-0.54542	-0.0002879	0.18124	9.567E-05	-0.36417	-0.00019223	528.3522689174879	66.473	0.15978	66.473	66.372	66.531	0					5	3	2	0	0	0	0.02725	1	6166	6166		10.265	3.0719	1	39487	+		57483	16947	47423	47465	62931	62931					0.1663175867913651
TLVPMPLLV	9	Unmodified	_TLVPMPLLV_					0	0	0		ENSG00000236699|ENST00000420470|ARHGEF38	ENSG00000236699|ENST00000420470|ARHGEF38	ENSG00000236699|ENST00000420470|ARHGEF38	MULTI-SECPEP	OvCa9_classI_Rep2	2	491.78204345703125	2	491.803914	981.593275	-1.0813	-0.00053177	3.8881	0.0019122	2.8068	0.0013804	491.8056876921867	85.293	0.98794	83.802	83.456	84.444	-1.4906					36	19	3	0	0	0	0.027462	1	7349	7349		12.959	0	1	35182			57484	9313	47424	47466	62932	62932					0.10174233758777973
TLVPRVLI	8	Unmodified	_TLVPRVLI_					0	0	0		ENSG00000124688|ENST00000372171|MAD2L1BP;nc|ENSG00000124688|Q15013-3|MAD2L1BP	ENSG00000124688|ENST00000372171|MAD2L1BP	ENSG00000124688|ENST00000372171|MAD2L1BP	MULTI-SECPEP	OvCa9_classI_Rep3	3	456.79656982421875	2	455.807845	909.601138	-0.71037	-0.00032379	0.68286	0.00031125	-0.027513	-1.2541E-05	455.80803190013427	116.81	1.3372	115.76	115.29	116.63	-1.0414					56	26	3	0	0	0	0.028476	1	8708	8708		19.36	0	1	81420			57485	3671	47425	47467	62933	62933					0.14272129070570827
TLVRERKKRER	11	Unmodified	_TLVRERKKRER_					0	0	0		nc|ENSG00000198003|A5D8V7-2|ODAD3;ENSG00000198003|ENST00000356392|ODAD3	nc|ENSG00000198003|A5D8V7-2|ODAD3	nc|ENSG00000198003|A5D8V7-2|ODAD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.9239807128906	3	490.970702	1469.89028	-0.80364	-0.00039457	-0.59548	-0.00029236	-1.3991	-0.00068693	491.30479304419737	61.48	0.16832	61.48	61.374	61.542	0					5	3	2	0	0	0	0.026365	1	5410	5410		20.315	6.229	1	124950			57486	8772	47426	47468	62934	62934					0.17412786959698678
TLVRHQKV	8	Unmodified	_TLVRHQKV_					0	0	0		nc|ENSG00000131849|P52740-2|ZNF132;ENSG00000131849|ENST00000254166|ZNF132	nc|ENSG00000131849|P52740-2|ZNF132	nc|ENSG00000131849|P52740-2|ZNF132	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.2658386230469	2	490.803626	979.592698	0.26391	0.00012953	-1.3055	-0.00064075	-1.0416	-0.00051122	490.8028184123904	64.088	0.342	60.613	60.442	60.784	-3.475					8	6	2	0	0	0	0.028476	1	4540	4540		26.796	0	1	20596			57487	4093	47427	47469	62935	62935					0.10208575153944821
TLVSLPQL	8	Unmodified	_TLVSLPQL_					0	0	0			REV__ENSG00000160753|ENST00000368352|RUSC1	REV__ENSG00000160753|ENST00000368352|RUSC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	435.7692565917969	2	435.768386	869.522219	-0.31477	-0.00013716	0.19307	8.4135E-05	-0.12169	-5.303E-05	435.7683670187142	106.31	1.6574	104.29	103.9	105.55	-2.0161					72	31	4	0	0	0	0.64371	1	9702	9702		54.776	0	1	244900	+		57488	20671	47428	47470	62936	62936					0.08223857045629757
TLVTIAKSLL	10	Unmodified	_TLVTIAKSLL_					0	0	0		ENSG00000119138|ENST00000377126|KLF9	ENSG00000119138|ENST00000377126|KLF9	ENSG00000119138|ENST00000377126|KLF9	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.752197265625	2	529.844625	1057.6747	2.7055	0.0014335	2.8302	0.0014995	5.5356	0.002933	529.8445571851095	99.141	1.1381	99.141	98.801	99.939	0					52	27	3	0	0	0	0.02658	1	10901	10901		54.776	5.3348	1	2442700			57489	3343	47429	47471	62937	62937					0.14816632722386203
TLVWQPDILVG	11	Unmodified	_TLVWQPDILVG_					0	0	0			REV__ENSG00000113088|ENST00000231009|GZMK	REV__ENSG00000113088|ENST00000231009|GZMK	MULTI-SECPEP	OvCa9_classI_Rep4_	4	413.2414855957031	3	414.236051	1239.68632	0.20921	8.6663E-05	-4.0098	-0.001661	-3.8005	-0.0015743	414.23430325556814	63.893	1.4532	60.418	60.156	61.61	-3.475					76	29	4	0	0	0	0.025624	1	4640	4640		32.034	6.9663	1	651890	+		57490	18135	47430	47472	62938	62938					0.07606829745691357
TLVWQPDILVG	11	Unmodified	_TLVWQPDILVG_					0	0	0			REV__ENSG00000113088|ENST00000231009|GZMK	REV__ENSG00000113088|ENST00000231009|GZMK	MULTI-MATCH	OvCa99_classI_Rep5	1		3	414.236051	1239.68632	0.5228	0.00021656	-3.6601	-0.0015161	-3.1373	-0.0012996	414.234435148853	60.239	0.72766	60.239	59.918	60.646	0	-0.076747	-0.00099874	NaN	32.034	39	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	977200	+		57491	18135	47430	47472							0.07606829745691357
TLVWQPDILVG	11	Unmodified	_TLVWQPDILVG_					0	0	0			REV__ENSG00000113088|ENST00000231009|GZMK	REV__ENSG00000113088|ENST00000231009|GZMK	MULTI-MATCH	OvCa9_classI_Rep2	2		3	414.236051	1239.68632	-1.095	-0.0004536	-1.931	-0.00079991	-3.0261	-0.0012535	414.2350981291456	63.035	1.3659	60.29	59.795	61.161	-2.7444	-0.02526	0.00115	NaN	32.034	83	25	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	216110	+		57492	18135	47430	47472							0.07606829745691357
TLWGGLLRL	9	Unmodified	_TLWGGLLRL_					0	0	0		ENSG00000175348|ENST00000534025|TMEM9B	ENSG00000175348|ENST00000534025|TMEM9B	ENSG00000175348|ENST00000534025|TMEM9B	MULTI-MSMS	OvCa99_classI_Rep5	1	514.8179931640625	2	514.816202	1027.61785	0.73083	0.00037624	1.8486	0.00095171	2.5795	0.001328	514.8169818525938	139.69	1.3181	139.69	139.41	140.73	0					62	27	3	0	0	0	0.37135	2	16322	16322;16348		54.776	3.5761	1	347760			57493	7537	47431	47473	62939;62940	62939					0.10514629956514909
TLWKVELD	8	Unmodified	_TLWKVELD_					0	0	0		ENSG00000165186|ENST00000379361|PTCHD1;nc|ENSG00000165186|Q96NR3-2|PTCHD1	ENSG00000165186|ENST00000379361|PTCHD1	ENSG00000165186|ENST00000379361|PTCHD1	MULTI-SECPEP	OvCa9_classI_Rep3	3	501.30157470703125	2	502.276575	1002.5386	-0.086569	-4.3482E-05	-1.6546	-0.00083105	-1.7411	-0.00087453	502.27555399967235	103.88	0.83632	102.44	102.18	103.02	-1.4347					22	15	2	0	0	0	0.028476	1	7213	7213		74.255	5.4682	1	22404			57494	6533	47432	47474	62941	62941					0.03742938211712499
TLWKVELD	8	Unmodified	_TLWKVELD_					0	0	0		ENSG00000165186|ENST00000379361|PTCHD1;nc|ENSG00000165186|Q96NR3-2|PTCHD1	ENSG00000165186|ENST00000379361|PTCHD1	ENSG00000165186|ENST00000379361|PTCHD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.3016052246094	2	502.276575	1002.5386	-0.902	-0.00045305	0.0056635	2.8447E-06	-0.89634	-0.00045021	502.2763276529748	104.52	0.62941	102.4	102.06	102.69	-2.1192					18	11	2	0	0	0	0.028476	1	9460	9460		104.75	5.3716	1	37243			57495	6533	47432	47474	62942	62942					0.03742938211712499
TLWNQELYI	9	Unmodified	_TLWNQELYI_					0	0	0		ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	ENSG00000068394|ENST00000156109|GPKOW	MULTI-MSMS	OvCa99_classI_Rep5	1	590.3096923828125	2	590.305864	1178.59717	1.2754	0.00075287	-0.39335	-0.0002322	0.88204	0.00052068	590.3058400339979	144.15	0.97807	144.15	143.81	144.79	0					38	19	3	0	0	0	0.22621	1	16850	16850		71.877	2.2498	1	257960			57496	1391	47433	47475	62943	62943					0.015019947861901528
TLWQALGLE	9	Unmodified	_TLWQALGLE_					0	0	0			REV__ENST00000436697.2_2_15:55609693-55609819:-|nuORF	REV__ENST00000436697.2_2_15:55609693-55609819:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7820434570312	2	515.782025	1029.5495	-1.1501	-0.0005932	1.5396	0.00079408	0.38947	0.00020088	515.7828971636932	118.13	1.4732	116.79	116.16	117.63	-1.3444					62	27	4	0	0	0	0.46377	1	11050	11050		45.952	1.8352	1	136060	+		57497	25786	47434	47476	62944	62944					0.035903405860153725
TLWSRRWTPWW	11	Unmodified	_TLWSRRWTPWW_					0	0	0			REV__ENST00000250405.9_2_14:23777280-23778100:+|nuORF	REV__ENST00000250405.9_2_14:23777280-23778100:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7933349609375	3	525.60536	1573.79425	-0.59897	-0.00031482	-0.24413	-0.00012831	-0.8431	-0.00044314	525.6052054885714	48.944	0.44549	48.944	48.718	49.164	0					16	9	2	0	0	0	0.026448	1	3605	3605		9.2118	0.41249	1	276170	+		57498	23858	47435	47477	62945	62945					0.030306391196518234
TLWSRRWTPWW	11	Unmodified	_TLWSRRWTPWW_					0	0	0			REV__ENST00000250405.9_2_14:23777280-23778100:+|nuORF	REV__ENST00000250405.9_2_14:23777280-23778100:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	525.60536	1573.79425	-0.954	-0.00050143	-0.55458	-0.00029149	-1.5086	-0.00079292	525.9395859179908	52.304	0.35436	49.096	48.943	49.298	-3.208	0.076218	-0.00044261	NaN	12.957	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10604	+		57499	23858	47435	47477							0.030306391196518234
TLWTSANSALI	11	Unmodified	_TLWTSANSALI_					0	0	0		chr6:32579190-32580247|100|28.57|0.59|5.59|-|1|None,HLA-DRB1|1	chr6:32579190-32580247|100|28.57|0.59|5.59|-|1|None,HLA-DRB1|1	chr6:32579190-32580247|100|28.57|0.59|5.59|-|1|None,HLA-DRB1|1	MULTI-MSMS	OvCa9_classI_Rep3	3	588.8167724609375	2	588.816596	1175.61864	-0.63539	-0.00037413	0.48748	0.00028704	-0.1479	-8.7089E-05	588.8167831837943	129.05	0.98856	127.95	127.56	128.55	-1.1011					50	19	4	0	0	0	0.63561	1	10183	10183		41.427	1.3684	1	135200			57500	514	47436	47478	62946	62946					0.037853798148944406
TLWVDPYEV	9	Unmodified	_TLWVDPYEV_					0	0	0		ENSG00000159388|ENST00000290551|BTG2;ENSG00000133639|ENST00000256015|BTG1	ENSG00000159388|ENST00000290551|BTG2	ENSG00000159388|ENST00000290551|BTG2	MULTI-MSMS	OvCa99_classI_Rep5	1	561.2810668945312	2	561.279315	1120.54408	1.6172	0.00090771	0.75853	0.00042575	2.3758	0.0013335	561.2796226679186	139.17	2.2469	139.17	138.78	141.03	0					119	46	4	0	0	0	0.11471	3	16251	16251;16275;16300		93.195	43.659	1	1338400			57501	4228	47437	47479	62947;62948;62949	62947					-0.011373829964895776
TLYEAVREV	9	Unmodified	_TLYEAVREV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	OvCa99_classI_Rep5	1	540.2908935546875	2	540.290214	1078.56587	1.9445	0.0010506	-1.9446	-0.0010506	-9.4494E-05	-5.1054E-08	540.2887814095353	83.869	1.4647	83.869	83.377	84.841	0					88	34	4	0	0	0	0.056671	2	8737	8737;8767		114.89	43.017	1	7551900			57502	8867	47438	47480	62950;62951	62950					0.029734217520854145
TLYEAVREV	9	Unmodified	_TLYEAVREV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	OvCa9_classI_Rep2	2	540.2897338867188	2	540.290214	1078.56587	-1.7278	-0.0009335	0.71077	0.00038402	-1.017	-0.00054948	540.2904950361146	85.563	2.7232	84.072	83.505	86.228	-1.4906					144	53	4	0	0	0	0.056671	2	7411	7404;7411		114.89	43.017	1	520730			57503	8867	47438	47480	62952;62953	62953					0.029734217520854145
TLYEAVREV	9	Unmodified	_TLYEAVREV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	OvCa9_classI_Rep3	3	540.2908935546875	2	540.290214	1078.56587	-0.40106	-0.00021669	-0.017496	-9.4528E-06	-0.41856	-0.00022614	540.2900493425688	86.284	3.0211	84.063	83.735	86.757	-2.2204					164	59	4	0	0	0	0.040625	4	5126	5114;5120;5126;5138		126.24	41.906	1	940010			57504	8867	47438	47480	62954;62955;62956;62957	62956					0.029734217520854145
TLYEAVREV	9	Unmodified	_TLYEAVREV_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF	ENSG00000198755|ENST00000322203|RPL10A	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.2911376953125	2	540.290214	1078.56587	-0.44063	-0.00023807	-1.3139	-0.00070988	-1.7545	-0.00094795	540.2892885440694	86.659	2.9412	84.032	83.663	86.604	-2.6269					154	58	4	0	0	0	0.056671	6	7341	7329;7341;7352;7365;7377;7390		114.89	52.787	1	789250			57505	8867	47438	47480	62958;62959;62960;62961;62962;62963	62959					0.029734217520854145
TLYEHNNEL	9	Unmodified	_TLYEHNNEL_					0	0	0		ENST00000548880.1_1_12:53709415-53715282:-|nuORF;nc|ENSG00000094914|Q9NRG9-2|AAAS;ENSG00000094914|ENST00000209873|AAAS	ENST00000548880.1_1_12:53709415-53715282:-|nuORF	ENST00000548880.1_1_12:53709415-53715282:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	566.7684326171875	2	566.767103	1131.51965	-0.34076	-0.00019313	-0.084963	-4.8154E-05	-0.42572	-0.00024129	566.766926092877	61.624	1.1277	61.624	61.332	62.46	0					70	26	4	0	0	0	0.045281	1	5444	5444		122.18	31.399	1	2360600			57506	1915	47439	47481	62964	62964					-0.0408464315000856
TLYFLILL	8	Unmodified	_TLYFLILL_					0	0	0		ENST00000352393.8_2_20:34213985-34214111:-|nuORF	ENST00000352393.8_2_20:34213985-34214111:-|nuORF	ENST00000352393.8_2_20:34213985-34214111:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.333740234375	2	498.312429	994.610306	1.2602	0.00062795	3.4419	0.0017151	4.702	0.0023431	498.3140769459341	124.61	0.36459	123.56	123.38	123.74	-1.0519					10	6	2	0	0	0	0.028476	1	9676	9676		42.474	0	1	23754			57507	10654	47440	47482	62965	62965					0.1127847763623322
TLYHEEIYQL	10	Unmodified	_TLYHEEIYQL_					0	0	0			REV__tr|A0A553SLP7|A0A553SLP7_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21045PE=4SV=1	REV__tr|A0A553SLP7|A0A553SLP7_NIACIAraCfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_21045PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	436.28961181640625	3	436.887199	1307.63977	0.2993	0.00013076	3.5739	0.0015614	3.8732	0.0016922	437.22326921006294	38.173	0.45726	38.173	37.983	38.44	0					13	9	2	0	0	0	0.027033	1	2125	2125		41.427	21.8	1	29440	+		57508	30247	47441	47483	62966	62966					-0.0017465487621848297
TLYNTEVLL	9	Unmodified	_TLYNTEVLL_					0	0	0		nc|ENSG00000151702|Q01543-2|FLI1;nc|ENSG00000151702|Q01543-3|FLI1;ENSG00000151702|ENST00000527786|FLI1	nc|ENSG00000151702|Q01543-2|FLI1	nc|ENSG00000151702|Q01543-2|FLI1	MULTI-MSMS	OvCa99_classI_Rep5	1	533.2985229492188	2	533.294965	1064.57538	1.7174	0.00091591	0.36331	0.00019375	2.0808	0.0011097	533.2945709000002	127.71	1.2005	127.71	127.36	128.56	0					49	25	3	0	0	0	0.068524	2	14785	14785;14808		108.09	8.7125	1	387340			57509	5577	47442	47484	62967;62968	62967					0.04567190037619184
TLYQNLGNYG	10	Unmodified	_TLYQNLGNYG_					0	0	0			REV__ENSG00000237440|ENST00000427401|ZNF737	REV__ENSG00000237440|ENST00000427401|ZNF737	MULTI-SECPEP	OvCa9_classI_Rep4_	4	571.3438720703125	2	571.77747	1141.54039	-1.0722	-0.00061306	0.65082	0.00037213	-0.42138	-0.00024094	571.7776766784581	42.202	1.1311	39.222	38.959	40.09	-2.9804					44	21	3	0	0	0	0.027028	1	2021	2021		31.53	1.2121	1	105300	+		57510	23419	47443	47485	62969	62969					-0.024720527703493644
TLYRLSEV	8	Unmodified	_TLYRLSEV_					0	0	0			REV__ENSG00000163312|ENST00000295488|HELQ	REV__ENSG00000163312|ENST00000295488|HELQ	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.2547302246094	2	490.7742	979.533846	-0.69065	-0.00033895	0.3046	0.00014949	-0.38605	-0.00018946	490.7740219822453	88.772	1.1396	86.169	85.933	87.073	-2.6027					30	22	2	0	0	0	0.028476	1	7582	7582		37.159	5.2042	1	187840	+		57511	20825	47444	47486	62970	62970					0.04326054068940266
TLYRLSEV	8	Unmodified	_TLYRLSEV_					0	0	0			REV__ENSG00000163312|ENST00000295488|HELQ	REV__ENSG00000163312|ENST00000295488|HELQ	MULTI-MATCH	OvCa9_classI_Rep2	2		2	490.7742	979.533846	1.9002	0.00093255	-7.5701	-0.0037152	-5.6699	-0.0027826	490.77256126720107	87.55	1.381	86.119	85.543	86.924	-1.4311	-0.063881	-0.0061282	NaN	37.159	59	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110360	+		57512	20825	47444	47486							0.04326054068940266
TLYRLSEV	8	Unmodified	_TLYRLSEV_					0	0	0			REV__ENSG00000163312|ENST00000295488|HELQ	REV__ENSG00000163312|ENST00000295488|HELQ	MULTI-MATCH	OvCa9_classI_Rep3	3		2	490.7742	979.533846	-0.75793	-0.00037197	-0.94105	-0.00046184	-1.699	-0.00083381	490.7731342658108	88.391	1.7908	86.26	85.957	87.748	-2.1309	0.077443	0.00037849	NaN	37.159	51	35	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158520	+		57513	20825	47444	47486							0.04326054068940266
TMAGAIIVLL	10	Oxidation (M)	_TM(Oxidation (M))AGAIIVLL_		TM(1)AGAIIVLL		TM(48)AGAIIVLL	0	0	1		tr|A0A7D7ACT6|A0A7D7ACT6_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_20540PE=4SV=1	tr|A0A7D7ACT6|A0A7D7ACT6_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_20540PE=4SV=1	tr|A0A7D7ACT6|A0A7D7ACT6_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_20540PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	509.30712890625	2	509.304278	1016.594	1.041	0.00053016	2.5939	0.0013211	3.6349	0.0018513	509.3057231558449	150.82	1.2108	150.82	150.39	151.6	0					69	23	4	0	0	0	0.55145	1	17630	17630		47.916	17.412	1	523440			57514	36234	47445	47487	62971	62971		784			0.08637028407849812
TMALDKWYNAE	11	Unmodified	_TMALDKWYNAE_					0	0	0			REV__ENSG00000072864|ENST00000396354|NDE1	REV__ENSG00000072864|ENST00000396354|NDE1	MULTI-SECPEP	OvCa99_classI_Rep5	1	448.74603271484375	3	447.876306	1340.60709	0.17001	7.6144E-05	2.6181	0.0011726	2.7881	0.0012487	447.8773480951622	33.605	0.48863	33.605	33.384	33.873	0					22	9	4	0	0	0	0.026174	1	1531	1531		22.562	16.561	1	113730	+		57515	16927	47446	47488	62972	62972					-0.049591852707180806
TMASDPLRSI	10	Unmodified	_TMASDPLRSI_					0	0	0			REV__ENST00000335044.6_2_3:47324147-47324234:-|nuORF	REV__ENST00000335044.6_2_3:47324147-47324234:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	544.821044921875	2	545.781699	1089.54884	-0.76168	-0.00041571	-0.49765	-0.00027161	-1.2593	-0.00068732	545.7809981167159	89.561	0.71907	87.48	87.337	88.056	-2.0805					18	13	2	0	0	0	0.026968	1	5527	5527		29.17	0.020503	1	211250	+		57516	24575	47447	47489	62973	62973					0.007651778746321725
TMATMVAVTQT	11	Unmodified	_TMATMVAVTQT_					0	0	0		ENST00000486260.5_1_1:155170782-155176189:-|nuORF;ENST00000541990.5_1_1:155170782-155174851:-|nuORF	ENST00000486260.5_1_1:155170782-155176189:-|nuORF	ENST00000486260.5_1_1:155170782-155176189:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.2967529296875	2	577.283217	1152.55188	1.7406	0.0010048	-3.1629	-0.0018259	-1.4223	-0.00082108	577.2811088339911	85.272	0.53895	85.272	84.923	85.462	0					22	12	2	0	0	0	0.025759	1	8893	8893		16.007	0	1	603030			57517	12621	47448	47490	62974	62974					-0.018293150628778676
TMAYYEWH	8	Unmodified	_TMAYYEWH_					0	0	0			REV__ENSG00000172215|ENST00000304552|CXCR6	REV__ENSG00000172215|ENST00000304552|CXCR6	MULTI-MSMS	OvCa9_classI_Rep3	3	550.726806640625	2	550.728935	1099.44332	0.73562	0.00040513	-3.8734	-0.0021332	-3.1377	-0.001728	550.7263877852107	120.48	1.8402	119.45	119.17	121.01	-1.0271					94	35	5	0	0	0	0.66704	1	9182	9182		50.025	14.406	1	207170	+		57518	21682	47449	47491	62975	62975					-0.10242738250963157
TMCMRDLL	8	Unmodified	_TMCMRDLL_					0	0	0			REV__ENSG00000141385|ENST00000269143|AFG3L2	REV__ENSG00000141385|ENST00000269143|AFG3L2	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.9234313964844	2	491.729566	981.444579	-0.82108	-0.00040375	-4.1834	-0.0020571	-5.0045	-0.0024609	491.72735802522976	61.58	0.41017	61.58	61.416	61.826	0					16	9	2	0	0	0	0.028476	1	5470	5470		51.335	1.8939	1	235490	+		57519	19732	47450	47492	62976	62976					-0.04688563478089236
TMELLNEKDQ	10	Unmodified	_TMELLNEKDQ_					0	0	0			REV__nc|ENSG00000186409|Q5VVM6-2|CCDC30	REV__nc|ENSG00000186409|Q5VVM6-2|CCDC30	MULTI-SECPEP	OvCa99_classI_Rep5	1	611.320068359375	2	610.795003	1219.57545	1.8028	0.0011012	-1.1982	-0.00073188	0.6046	0.00036929	610.7956736752609	130.06	0.80728	130.06	129.68	130.48	0					23	16	2	0	0	0	0.026931	1	15141	15141		30.318	1.741	1	38465	+		57520	22580	47451	47493	62977	62977					-0.025551780246814815
TMGKADVWLI	10	Unmodified	_TMGKADVWLI_					0	0	0		ENSG00000171234|ENST00000305231|UGT2B7	ENSG00000171234|ENST00000305231|UGT2B7	ENSG00000171234|ENST00000305231|UGT2B7	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.3232421875	2	567.30481	1132.59507	0.12361	7.0124E-05	1.2946	0.00073444	1.4182	0.00080456	567.3052156383009	52.501	0.21951	52.501	52.39	52.61	0					6	4	2	0	0	0	0.026659	1	4124	4124		37.812	12.237	1	55061			57521	7188	47452	47494	62978	62978					0.03407242776734165
TMHQSQKNI	9	Unmodified	_TMHQSQKNI_					0	0	0			REV__TP53|p.Y163N|1|0.66|ENSG00000141510|chr17:7675125-7675125|A/T|missense_variant	REV__TP53|p.Y163N|1|0.66|ENSG00000141510|chr17:7675125-7675125|A/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.34619140625	2	543.771665	1085.52878	2.8037	0.0015246	1.3373	0.00072718	4.141	0.0022517	544.2732463725027	130.92	0.79794	129.45	129.3	130.1	-1.4779					22	16	2	0	0	0	0.027462	1	12599	12599		26.693	3.6504	1	30495	+		57522	29520	47453	47495	62979	62979					-0.010565730653070204
TMIYSVCLNAL	11	Oxidation (M)	_TM(Oxidation (M))IYSVCLNAL_		TM(1)IYSVCLNAL		TM(53)IYSVCLNAL	0	0	1			REV__ENSG00000197557|ENST00000355689|TTC30A	REV__ENSG00000197557|ENST00000355689|TTC30A	MULTI-MSMS	OvCa9_classI_Rep2	2	622.3086547851562	2	622.306692	1242.59883	-0.51832	-0.00032255	3.6478	0.00227	3.1295	0.0019475	622.3088189255491	107.68	1.8137	107.38	107.02	108.83	-0.30836					78	36	4	0	0	0	0.50928	1	10069	10069		52.937	8.5595	1	224110	+		57523	22934	47454	47496	62980	62980		532			-0.012764555117200871
TMIYSVCLNAL	11	Oxidation (M)	_TM(Oxidation (M))IYSVCLNAL_					0	0	1			REV__ENSG00000197557|ENST00000355689|TTC30A	REV__ENSG00000197557|ENST00000355689|TTC30A	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	622.306692	1242.59883	-0.51832	-0.00032255	3.6478	0.00227	3.1295	0.0019475	622.3088189255491	107.68	1.8137	107.38	107.02	108.83	-0.30836	0.03094	0.00014933	NaN	52.937	78	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224110	+		57524	22934	47454	47496				532			-0.012764555117200871
TMIYSVCLNAL	11	Oxidation (M)	_TM(Oxidation (M))IYSVCLNAL_					0	0	1			REV__ENSG00000197557|ENST00000355689|TTC30A	REV__ENSG00000197557|ENST00000355689|TTC30A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	622.306692	1242.59883	0.89121	0.00055461	2.5043	0.0015584	3.3955	0.0021131	622.3081243513394	108.58	1.1306	107.39	106.96	108.09	-1.1978	0.041518	-0.0012738	NaN	52.937	40	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54622	+		57525	22934	47454	47496				532			-0.012764555117200871
TMIYSVCLNAL	11	Oxidation (M)	_TM(Oxidation (M))IYSVCLNAL_					0	0	1			REV__ENSG00000197557|ENST00000355689|TTC30A	REV__ENSG00000197557|ENST00000355689|TTC30A	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	622.306692	1242.59883	-0.73192	-0.00045548	4.1645	0.0025916	3.4326	0.0021361	622.309235498579	109	1.0816	107.27	107.02	108.1	-1.7256	-0.072459	0.00079249	NaN	52.937	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55903	+		57526	22934	47454	47496				532			-0.012764555117200871
TMKELDLEI	9	Unmodified	_TMKELDLEI_					0	0	0		tr|A0A7D6VM88|A0A7D6VM88_9CLOTSegregationandcondensationproteinAOS=ClostridiumintestinaleOX=36845GN=scpAPE=3SV=1	tr|A0A7D6VM88|A0A7D6VM88_9CLOTSegregationandcondensationproteinAOS=ClostridiumintestinaleOX=36845GN=scpAPE=3SV=1	tr|A0A7D6VM88|A0A7D6VM88_9CLOTSegregationandcondensationproteinAOS=ClostridiumintestinaleOX=36845GN=scpAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	546.2867431640625	2	546.286282	1090.55801	-1.7842	-0.00097466	1.4803	0.00080868	-0.30384	-0.00016598	546.2868719902328	137.72	1.1662	136.63	136.24	137.41	-1.0858					55	23	3	0	0	0	0.66262	1	11257	11257		24.519	0.31644	1	134560			57527	34650	47455	47497	62981	62981					0.01635526440304602
TMKERFLL	8	Unmodified	_TMKERFLL_					0	0	0			REV__tr|A0A7D6VRU3|A0A7D6VRU3_9CLOTMethyltransferasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03005PE=4SV=1	REV__tr|A0A7D6VRU3|A0A7D6VRU3_9CLOTMethyltransferasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03005PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.7631225585938	2	519.294245	1036.57394	1.55	0.00080489	-3.0458	-0.0015817	-1.4959	-0.00077681	519.2923888680571	118.27	0.37302	118.27	118.02	118.39	0					10	7	2	0	0	0	0.028476	1	13561	13561		16.473	0	1	28244	+		57528	31444	47456	47498	62982	62982					0.05711277467889886
TMKHPLAM	8	Unmodified	_TMKHPLAM_					0	0	0		ENST00000446230.6_1_11:94278904-94308218:+|nuORF	ENST00000446230.6_1_11:94278904-94308218:+|nuORF	ENST00000446230.6_1_11:94278904-94308218:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	463.7979736328125	2	464.740791	927.467029	0.46035	0.00021394	-2.307	-0.0010721	-1.8466	-0.00085819	464.73994751898186	71.563	0.63258	69.055	68.594	69.226	-2.5071					15	11	2	0	0	0	0.028476	1	5711	5711		33.516	0	1	10803			57529	11989	47457	47499	62983	62983					0.000394039818274905
TMKKKKSL	8	Unmodified	_TMKKKKSL_					0	0	0			REV__ENST00000216378.2_1_14:50799198-50799279:-|nuORF	REV__ENST00000216378.2_1_14:50799198-50799279:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.30718994140625	2	482.304613	962.594672	0.55527	0.00026781	3.1637	0.0015259	3.719	0.0017937	482.30597189609745	140.99	1.301	139.53	139.2	140.5	-1.4627					53	24	3	0	0	0	0.75208	1	13776	13776		17.365	0.89182	1	78534	+		57530	23723	47458	47500	62984	62984					0.11187867847536381
TMKPILKLD	9	Unmodified	_TMKPILKLD_					0	0	0		ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	ENSG00000121316|ENST00000240617|PLBD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.2999267578125	2	529.817553	1057.62055	-1.183	-0.00062679	2.1544	0.0011414	0.97138	0.00051465	529.8182950568097	48.226	0.98013	45.118	44.938	45.918	-3.1077					47	18	3	0	0	0	0.027462	1	2738	2738		45.972	19.279	1	801830			57531	3478	47459	47501	62985	62985					0.0940471729913952
TMKWKVGKR	9	Unmodified	_TMKWKVGKR_					0	0	0		LCT|p.N1174K|1|0.04|ENSG00000115850|chr2:135808825-135808825|G/C|missense_variant	LCT|p.N1174K|1|0.04|ENSG00000115850|chr2:135808825-135808825|G/C|missense_variant	LCT|p.N1174K|1|0.04|ENSG00000115850|chr2:135808825-135808825|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3291015625	2	567.334236	1132.65392	-3.474	-0.0019709	-4.3679	-0.002478	-7.8419	-0.004449	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.55588	1	12254	12254		37.159	9.0776	1	458690			57532	14794	47460	47502	62986	62986					0.09289763861715983
TMLARLASA	9	Unmodified	_TMLARLASA_					0	0	0		ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	ENSG00000173546|ENST00000308508|CSPG4	MULTI-MSMS	OvCa99_classI_Rep5	1	467.2642822265625	2	467.262945	932.511337	2.4167	0.0011292	-0.10049	-4.6954E-05	2.3162	0.0010823	467.26273918010776	80.095	0.9614	80.095	79.783	80.744	0					50	22	3	0	0	0	0.16264	1	8197	8197		82.75	19.444	1	1590400			57533	7388	47461	47503	62987	62987					0.042381313996770587
TMLIEELQD	9	Oxidation (M)	_TM(Oxidation (M))LIEELQD_		TM(1)LIEELQD		TM(74)LIEELQD	0	0	1		ENST00000495849.5_1_2:191897681-192012929:-|nuORF;ENSG00000138378|ENST00000392320|STAT4	ENST00000495849.5_1_2:191897681-192012929:-|nuORF	ENST00000495849.5_1_2:191897681-192012929:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.2809448242188	2	554.265547	1106.51654	0.073654	4.0824E-05	4.2374	0.0023486	4.311	0.0023895	554.2677630029336	62.346	0.6418	58.888	58.667	59.309	-3.4577					18	12	2	0	0	0	0.027295	1	4317	4317		74.255	17.534	1	72084			57534	4681	47462	47504	62988	62988		151			-0.03245654319039204
TMLIEELQD	9	Oxidation (M)	_TM(Oxidation (M))LIEELQD_					0	0	1		ENST00000495849.5_1_2:191897681-192012929:-|nuORF;ENSG00000138378|ENST00000392320|STAT4	ENST00000495849.5_1_2:191897681-192012929:-|nuORF	ENST00000495849.5_1_2:191897681-192012929:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	554.265547	1106.51654	-0.64208	-0.00035589	4.5885	0.0025433	3.9465	0.0021874	554.268580256781	61.606	0.36708	58.847	58.62	58.987	-2.7593	-0.020675	0.00031368	NaN	74.255	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13839			57535	4681	47462	47504				151			-0.03245654319039204
TMLVAVWGL	9	Unmodified	_TMLVAVWGL_					0	0	0			REV__ENSG00000105370|ENST00000596399|LIM2	REV__ENSG00000105370|ENST00000596399|LIM2	MULTI-MSMS	OvCa99_classI_Rep5	1	495.2816162109375	2	495.278063	988.541574	0.40416	0.00020017	4.2603	0.00211	4.6644	0.0023102	495.2800653261184	114.78	0.92731	114.78	114.47	115.39	0					41	19	3	0	0	0	0.44294	1	13125	13125		47.916	3.7988	1	363090	+		57536	17715	47463	47505	62989	62989					0.0468449006488072
TMMDAPDIID	10	Unmodified	_TMMDAPDIID_					0	0	0		tr|A0A553SJ04|A0A553SJ04_NIACIPucRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_15830PE=3SV=1	tr|A0A553SJ04|A0A553SJ04_NIACIPucRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_15830PE=3SV=1	tr|A0A553SJ04|A0A553SJ04_NIACIPucRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_15830PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	560.8036499023438	2	561.2463	1120.47805	0.21508	0.00012071	-0.39207	-0.00022005	-0.17699	-9.9333E-05	561.2459388126218	129.7	0.74231	128.59	128.39	129.13	-1.1121					22	14	2	0	0	0	0.026891	1	10319	10319		39.253	4.0521	1	25944			57537	33448	47464	47506	62990	62990					-0.07737283225196734
TMNVPKGKR	9	Unmodified	_TMNVPKGKR_					0	0	0			REV__nc|ENSG00000060656|Q92729-3|PTPRU	REV__nc|ENSG00000060656|Q92729-3|PTPRU	MULTI-MSMS	OvCa9_classI_Rep2	2	515.793212890625	2	515.794943	1029.57533	-0.78303	-0.00040389	-4.1169	-0.0021235	-4.8999	-0.0025273	515.7927187364921	120.88	1.4824	120.68	120.36	121.84	-0.19718					73	29	3	0	0	0	0.49652	1	11688	11688		42.864	1.4377	1	156340	+		57538	16739	47465	47507	62991	62991					0.061729115566322434
TMPTAIFGPL	10	Unmodified	_TMPTAIFGPL_					0	0	0			REV__ENSG00000204228|ENST00000374662|HSD17B8	REV__ENSG00000204228|ENST00000374662|HSD17B8	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.809326171875	2	524.280803	1046.54705	2.2311	0.0011697	2.7241	0.0014282	4.9552	0.0025979	524.2822086290674	75.434	0.51263	75.434	75.168	75.68	0					31	12	3	0	0	0	0.026688	1	7511	7511		49.442	12.282	1	2110900	+		57539	23134	47466	47508	62992	62992					0.025641688567020537
TMRAIRRK	8	Unmodified	_TMRAIRRK_					0	0	0		nc|ENSG00000125686|Q15648-3|MED1;ENSG00000125686|ENST00000300651|MED1	nc|ENSG00000125686|Q15648-3|MED1	nc|ENSG00000125686|Q15648-3|MED1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7932739257812	2	516.316377	1030.6182	-0.50536	-0.00026093	-1.9572	-0.0010105	-2.4625	-0.0012714	516.3146733283648	33.316	0.54266	33.316	33.186	33.728	0					20	10	4	0	0	0	0.028476	1	1542	1542		25.45	0	1	78120			57540	3722	47467	47509	62993	62993					0.10411726404709043
TMRCLPVRLHG	11	Unmodified	_TMRCLPVRLHG_					0	0	0		L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|375|3|anti-sense	L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|375|3|anti-sense	L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|375|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	641.3533935546875	2	641.847184	1281.67982	1.9842	0.0012736	3.7015	0.0023758	5.6858	0.0036494	641.849635898379	125.53	0.8828	125.53	125.2	126.09	0					43	20	3	0	0	0	0.025638	1	14529	14529		30.318	2.6738	1	1097900			57541	14733	47468	47510	62994	62994					0.050242900416833436
TMRDMMKLM	9	Unmodified	_TMRDMMKLM_					0	0	0		tr|A0A553SNZ0|A0A553SNZ0_NIACIFlagellarbiosyntheticproteinFliROS=NialliacirculansOX=1397GN=fliRPE=3SV=1	tr|A0A553SNZ0|A0A553SNZ0_NIACIFlagellarbiosyntheticproteinFliROS=NialliacirculansOX=1397GN=fliRPE=3SV=1	tr|A0A553SNZ0|A0A553SNZ0_NIACIFlagellarbiosyntheticproteinFliROS=NialliacirculansOX=1397GN=fliRPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.7738647460938	2	578.770908	1155.52726	0.77221	0.00044693	-3.1631	-0.0018307	-2.3909	-0.0013838	579.2715605197765	139.05	0.2446	139.05	138.98	139.22	0					5	4	2	0	0	0	0.027462	1	16247	16247		30.318	11.214	1	15117			57542	33983	47469	47511	62995	62995					-0.044279897415890446
TMSLPLNPK	9	Unmodified	_TMSLPLNPK_					0	0	0		ENST00000551316.1_1_12:96252749-96255077:+|nuORF	ENST00000551316.1_1_12:96252749-96255077:+|nuORF	ENST00000551316.1_1_12:96252749-96255077:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.30499267578125	2	500.778428	999.542302	-1.1535	-0.00057762	1.6113	0.00080689	0.45781	0.00022926	500.778592421671	96.344	0.77036	94.516	94.369	95.14	-1.8286					18	14	2	0	0	0	0.027455	1	6325	6325		42.396	0	1	22807			57543	13599	47470	47512	62996	62996					0.042512847139278165
TMSSDLRTLN	10	Unmodified	_TMSSDLRTLN_					0	0	0			REV__ENSG00000241106|ENST00000438763|HLA-DOB	REV__ENSG00000241106|ENST00000438763|HLA-DOB	MULTI-MSMS	OvCa9_classI_Rep4_	4	569.2833251953125	2	569.282063	1136.54957	3.5918	0.0020448	0.33427	0.00019029	3.9261	0.0022351	569.2820671370904	134.05	1.1369	132.52	132.19	133.33	-1.5257					54	22	3	0	0	0	0.59317	1	12949	12949		42.864	3.6114	1	90201	+		57544	23445	47471	47513	62997	62997					-0.013240274762893023
TMTFGIVELY	10	Unmodified	_TMTFGIVELY_					0	0	0			REV__ENST00000528173.5_1_11:46391373-46400221:+|nuORF	REV__ENST00000528173.5_1_11:46391373-46400221:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	587.2949829101562	2	587.29665	1172.57875	-1.8304	-0.001075	-0.78167	-0.00045907	-2.6121	-0.0015341	587.2961004815837	119.51	2.07	118.17	117.83	119.9	-1.3444					114	39	5	0	0	0	0.66721	1	11240	11240		34.173	0	1	737630	+		57545	20143	47472	47514	62998	62998					-0.0006388318001881998
TMTIPVPPP	9	Unmodified	_TMTIPVPPP_					0	0	0		ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;nc|ENSG00000151150|Q12955-7|ANK3;ENST00000465749.2_1_10:61846327-61848039:-|nuORF	ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.9626770019531	2	476.762246	951.50994	-2.0964	-0.0009995	0.18003	8.5832E-05	-1.9164	-0.00091367	476.76174220319035	103.87	0.72443	103.87	103.55	104.28	0					22	16	2	0	0	0	0.027449	1	11581	11581		31.955	12.595	1	344490			57546	5537	47473	47515	62999	62999					0.0322449731091865
TMTNWYLL	8	Unmodified	_TMTNWYLL_					0	0	0		ENSG00000181333|ENST00000315765|HEPHL1	ENSG00000181333|ENST00000315765|HEPHL1	ENSG00000181333|ENST00000315765|HEPHL1	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.8172607421875	2	521.257328	1040.5001	-0.34811	-0.00018145	-3.7573	-0.0019585	-4.1054	-0.00214	521.2560748877852	115.58	0.29583	114.53	114.35	114.65	-1.0414					9	5	3	0	0	0	0.028476	1	8596	8596		44.117	0	1	9583.8			57547	7926	47474	47516	63000	63000					-0.018526906944543953
TMVMWARET	9	Unmodified	_TMVMWARET_					0	0	0		HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|193|3|anti-sense	HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|193|3|anti-sense	HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|193|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	562.7659912109375	2	562.764994	1123.51544	0.06028	3.3923E-05	2.0814	0.0011713	2.1417	0.0012052	562.7660370416633	41.626	6.1897	41.626	40.795	46.985	0					363	141	3	0	0	0	0.31747	1	3272	3272		60.972	6.1956	1	1452500			57548	14433	47475	47517	63001	63001					-0.04138147168919204
TMVPMMVM	8	2 Oxidation (M)	_TMVPM(Oxidation (M))M(Oxidation (M))VM_		TM(0.007)VPM(0.993)M(0.997)VM(0.003)		TM(-23)VPM(23)M(29)VM(-28)	0	0	2			REV__tr|A0A553ST06|A0A553ST06_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_04175PE=3SV=1	REV__tr|A0A553ST06|A0A553ST06_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_04175PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.2898864746094	2	486.207078	970.399603	0.66422	0.00032295	2.1339	0.0010375	2.7982	0.0013605	486.20972797461746	96.581	1.56	94.155	93.406	94.966	-2.4256					62	30	4	0	0	0	0.028476	1	8607	8607		42.474	18.272	6	79891	+		57549	30559	47476	47518	63002	63002		671;672			-0.08678130335624701
TMVVVICVIVL	11	Unmodified	_TMVVVICVIVL_					0	0	0		nc|ENSG00000135902|Q07001-2|CHRND;ENSG00000135902|ENST00000258385|CHRND	nc|ENSG00000135902|Q07001-2|CHRND	nc|ENSG00000135902|Q07001-2|CHRND	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.7949829101562	2	594.858363	1187.70217	-0.91147	-0.00054219	-0.26895	-0.00015999	-1.1804	-0.00070218	594.8579958102486	104.53	0.55031	104.53	104.28	104.83	0					24	12	3	0	0	0	0.025611	1	11720	11720		27.882	0	1	473930			57550	4425	47477	47519	63003	63003					0.11583076666738634
TMYGAQVSFF	10	Oxidation (M)	_TM(Oxidation (M))YGAQVSFF_		TM(1)YGAQVSFF		TM(70)YGAQVSFF	0	0	1		ENSG00000064687|ENST00000263094|ABCA7;nc|ENSG00000064687|Q8IZY2-2|ABCA7	ENSG00000064687|ENST00000263094|ABCA7	ENSG00000064687|ENST00000263094|ABCA7	MULTI-SECPEP	OvCa9_classI_Rep3	3	583.8168334960938	2	583.762975	1165.5114	-2.1204	-0.0012378	0.93883	0.00054805	-1.1816	-0.00068977	583.7637043888792	82.194	0.74798	79.897	79.584	80.332	-2.2963					26	14	3	0	0	0	0.027149	1	4590	4590		69.628	27.153	1	48303			57551	1303	47478	47520	63004	63004		49			-0.06473913390982489
TMYGAQVSFF	10	Oxidation (M)	_TM(Oxidation (M))YGAQVSFF_					0	0	1		ENSG00000064687|ENST00000263094|ABCA7;nc|ENSG00000064687|Q8IZY2-2|ABCA7	ENSG00000064687|ENST00000263094|ABCA7	ENSG00000064687|ENST00000263094|ABCA7	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	583.762975	1165.5114	-1.1932	-0.00069656	-0.118	-6.8885E-05	-1.3112	-0.00076544	583.7629459104138	82.713	0.68258	80.03	79.832	80.514	-2.683	0.066335	-0.00057219	NaN	69.628	19	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49483			57552	1303	47478	47520				49			-0.06473913390982489
TMYKYRPGY	9	Unmodified	_TMYKYRPGY_					0	0	0		ENST00000529480.1_1_11:57457792-57467500:+|nuORF;nc|ENSG00000156599|Q9C0B5-2|ZDHHC5;ENSG00000156599|ENST00000287169|ZDHHC5	ENST00000529480.1_1_11:57457792-57467500:+|nuORF	ENST00000529480.1_1_11:57457792-57467500:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.3017578125	2	589.786784	1177.55902	-1.0003	-0.00058994	-4.2128	-0.0024846	-5.213	-0.0030746	589.7843051185104	36.846	0.40701	36.846	36.707	37.114	0					16	8	3	0	0	0	0.027462	1	2006	2006		21.96	1.013	1	216210			57553	5850	47479	47521	63005	63005					-0.02266214400106037
TMYPFIVTLE	10	Unmodified	_TMYPFIVTLE_					0	0	0		ENSG00000173275|ENST00000339249|ZNF449	ENSG00000173275|ENST00000339249|ZNF449	ENSG00000173275|ENST00000339249|ZNF449	MULTI-MSMS	OvCa9_classI_Rep3	3	607.3140869140625	2	607.3123	1212.61005	2.0773	0.0012616	0.59039	0.00035855	2.6677	0.0016201	607.3125547207642	106.87	1.4593	105.6	105.22	106.68	-1.267					86	28	4	0	0	0	0.67931	1	7596	7596		32.812	0.061884	1	1736200			57554	7366	47480	47522	63006	63006					0.0122468985409796
TNELNSNE	8	Unmodified	_TNELNSNE_					0	0	0		nc|ENSG00000118200|Q08AD1-2|CAMSAP2;ENSG00000118200|ENST00000358823|CAMSAP2;nc|ENSG00000118200|Q08AD1|CAMSAP2	nc|ENSG00000118200|Q08AD1-2|CAMSAP2	nc|ENSG00000118200|Q08AD1-2|CAMSAP2	MULTI-MSMS	OvCa99_classI_Rep5	1	460.70172119140625	2	460.701429	919.388304	-0.16479	-7.5918E-05	0.94369	0.00043476	0.7789	0.00035884	460.7018105895419	22.565	4.1216	22.565	21.422	25.544	0					192	96	4	0	0	0	0.68704	1	255	255		45.972	3.5761	1	499350			57555	3294	47481	47523	63007	63007					-0.07461453517885275
TNFGKTPVT	9	Unmodified	_TNFGKTPVT_					0	0	0			REV__ENSG00000122644|ENST00000651779|ARL4A	REV__ENSG00000122644|ENST00000651779|ARL4A	MULTI-MSMS	OvCa9_classI_Rep3	3	482.7591857910156	2	482.758549	963.502546	2.1392	0.0010327	1.1547	0.00055742	3.2938	0.0015901	482.7588804234167	57.803	3.1186	54.676	53.456	56.575	-3.1264					158	85	3	0	0	0	0.60342	1	1836	1836		31.53	3.6476	1	89902	+		57556	18607	47482	47524	63008	63008					0.019334810348709652
TNFSQSRIKM	10	Unmodified	_TNFSQSRIKM_					0	0	0			REV__ENSG00000164327|ENST00000357387|RICTOR	REV__ENSG00000164327|ENST00000357387|RICTOR	MULTI-MSMS	OvCa99_classI_Rep5	1	606.3162231445312	2	606.313697	1210.61284	2.4606	0.0014919	0.57391	0.00034797	3.0346	0.0018399	606.3141289919049	97.889	0.94083	97.889	97.611	98.552	0					33	21	2	0	0	0	0.73938	1	10854	10854		26.063	1.5442	1	1223400	+		57557	20977	47483	47525	63009	63009					0.015959580315666244
TNGPLPLPAPL	11	Unmodified	_TNGPLPLPAPL_					0	0	0			REV__ENST00000392038.6_1_19:40791093-40791249:-|nuORF	REV__ENST00000392038.6_1_19:40791093-40791249:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.274169921875	2	545.318774	1088.623	2.2701	0.0012379	-0.24482	-0.00013351	2.0253	0.0011044	545.3183907710193	120.78	0.82384	120.78	120.61	121.43	0					26	18	2	0	0	0	0.02601	1	13966	13966		21.96	6.3181	1	151280	+		57558	25247	47484	47526	63010	63010					0.08222889028456848
TNHLQRPKAL	10	Unmodified	_TNHLQRPKAL_					0	0	0			REV__ENSG00000047315|ENST00000314595|POLR2B	REV__ENSG00000047315|ENST00000314595|POLR2B	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3424072265625	2	589.343646	1176.67274	-5.1334	-0.0030254	3.8974	0.0022969	-1.236	-0.00072842	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.66721	1	12570	12570		34.173	1.422	1	589610	+		57559	16653	47485	47527	63011	63011					0.09147016757151505
TNIDISTLD	9	Unmodified	_TNIDISTLD_					0	0	0			REV__tr|A0A553SG37|A0A553SG37_NIACIIgdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10015PE=4SV=1	REV__tr|A0A553SG37|A0A553SG37_NIACIIgdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10015PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	495.7727355957031	2	496.250754	990.486955	-0.025124	-1.2468E-05	-1.9686	-0.00097694	-1.9938	-0.00098941	496.24924006519416	80.182	1.3717	77.842	77.36	78.732	-2.3399					57	26	3	0	0	0	0.027462	1	4418	4418		39.253	12.56	1	139380	+		57560	29656	47486	47528	63012	63012					-0.00866850272859665
TNIELQLTRI	10	Unmodified	_TNIELQLTRI_					0	0	0			REV__tr|A0A7D6VTH7|A0A7D6VTH7_9CLOTN-acetylmuramoyl-L-alanineamidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10915PE=4SV=1	REV__tr|A0A7D6VTH7|A0A7D6VTH7_9CLOTN-acetylmuramoyl-L-alanineamidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10915PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	400.90411376953125	3	400.903072	1199.68739	2.3868	0.00095686	-2.4054	-0.00096433	-0.018628	-7.4681E-06	400.9020627152264	83.731	1.9627	81.068	80.681	82.643	-2.6629					94	40	3	0	0	0	0.45953	2	6987	6987;6999		59.931	4.8469	1	1295400	+		57561	31605	47487	47529	63013;63014	63013					0.09553044114591103
TNIIGNKGL	9	Unmodified	_TNIIGNKGL_					0	0	0			REV__tr|A0A7D6ZEX0|A0A7D6ZEX0_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15480PE=3SV=1	REV__tr|A0A7D6ZEX0|A0A7D6ZEX0_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15480PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	464.7585754394531	2	465.274367	928.53418	-0.49573	-0.00023065	0.67413	0.00031366	0.1784	8.3006E-05	465.27452996863263	77.423	1.7711	75.633	74.843	76.614	-1.7894					74	33	3	0	0	0	0.027461	1	6523	6523		32.812	0	1	107270	+		57562	31952	47488	47530	63015	63015					0.06705473788815652
TNILKHMP	8	Unmodified	_TNILKHMP_					0	0	0			REV__ENST00000422486.1_1_3:185135660-185136437:-|nuORF	REV__ENST00000422486.1_1_3:185135660-185136437:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.29388427734375	2	477.265487	952.516422	-0.13752	-6.5632E-05	2.2892	0.0010925	2.1517	0.0010269	477.2650352528765	73.069	0.24094	73.069	72.994	73.235	0					6	5	2	0	0	0	0.028476	1	7151	7151		23.042	3.6825	1	78089	+		57563	25622	47489	47531	63016	63016					0.038264352623059494
TNIPPPSTQ	9	Unmodified	_TNIPPPSTQ_					0	0	0			REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	REV__nc|ENSG00000133958|Q9P2D8-2|UNC79	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.2937316894531	2	477.748182	953.481811	0.28776	0.00013747	1.4308	0.00068356	1.7186	0.00082104	477.74939237602536	75.178	0.23874	71.947	71.773	72.012	-3.2308					6	4	2	0	0	0	0.027462	1	5917	5917		39.253	18.306	1	20578	+		57564	19163	47490	47532	63017	63017					0.0032089065517766358
TNISWTKLL	9	Unmodified	_TNISWTKLL_					0	0	0		nc|ENSG00000081154|Q8WW12-2|PCNP	nc|ENSG00000081154|Q8WW12-2|PCNP	nc|ENSG00000081154|Q8WW12-2|PCNP	MULTI-MSMS	OvCa9_classI_Rep2	2	538.3106079101562	2	538.310949	1074.60735	-0.75668	-0.00040733	-0.30054	-0.00016179	-1.0572	-0.00056911	538.3104984778253	106.9	1.3198	106.59	106.32	107.64	-0.30836					69	26	4	0	0	0	0.46356	1	9960	9960		45.972	0.020292	1	342170			57565	14902	47491	47533	63018	63018					0.0730260251141317
TNIVALLQKV	10	Unmodified	_TNIVALLQKV_					0	0	0		ENSG00000133422|ENST00000397641|MORC2;nc|ENSG00000133422|Q9Y6X9-2|MORC2	ENSG00000133422|ENST00000397641|MORC2	ENSG00000133422|ENST00000397641|MORC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.306396484375	2	549.847699	1097.68084	-0.10695	-5.8804E-05	-3.1151	-0.0017129	-3.2221	-0.0017717	549.8457043652073	32.31	0.34848	32.31	32.154	32.503	0					12	6	3	0	0	0	0.026843	1	1391	1391		31.634	0	1	81460			57566	4220	47492	47534	63019	63019					0.13591150953902797
TNKKLILIL	9	Unmodified	_TNKKLILIL_					0	0	0			REV__ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant	REV__ITSN2|p.M1183Sfs*6|1|0.35|ENSG00000198399|chr2:24246137-24246159|CTTGGATCTGAGTCTGTCGTCAT/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	528.3648681640625	2	528.362985	1054.71142	0.60322	0.00031872	1.1054	0.00058404	1.7086	0.00090276	528.363382275887	159.06	1.8145	159.06	158.69	160.51	0					87	36	4	0	0	0	0.50149	1	18715	18715		42.396	0	1	385540	+		57567	23017	47493	47535	63020	63020					0.18624929338966467
TNLFIPKF	8	Unmodified	_TNLFIPKF_					0	0	0			REV__ENSG00000090861|ENST00000261772|AARS1	REV__ENSG00000090861|ENST00000261772|AARS1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.7408447265625	2	490.284203	978.553853	-1.9437	-0.00095298	-3.6558	-0.0017924	-5.5995	-0.0027453	490.28255958083804	49.666	0.77492	46.525	46.147	46.922	-3.1416					20	14	2	0	0	0	0.028476	1	2848	2848		35.618	0	1	66106	+		57568	17235	47494	47536	63021	63021					0.06371849799552365
TNLNQVTLI	9	Unmodified	_TNLNQVTLI_					0	0	0			REV__tr|A0A553STK1|A0A553STK1_NIACIDUF4179domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04965PE=4SV=1	REV__tr|A0A553STK1|A0A553STK1_NIACIDUF4179domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04965PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	508.291259765625	2	508.292756	1014.57096	-0.83136	-0.00042257	0.50337	0.00025586	-0.32799	-0.00016671	508.2928265703731	115.58	1.632	115.47	114.95	116.58	-0.11777					68	32	4	0	0	0	0.3076	1	11046	11046		62.107	5.3864	1	251420	+		57569	30975	47495	47537	63022	63022					0.06425725614712974
TNLQKIVKIDN	11	Unmodified	_TNLQKIVKIDN_					0	0	0		tr|A0A553SQG4|A0A553SQG4_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_07570PE=4SV=1;tr|A0A553SQX2|A0A553SQX2_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_07470PE=4SV=1	tr|A0A553SQG4|A0A553SQG4_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_07570PE=4SV=1	tr|A0A553SQG4|A0A553SQG4_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_07570PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	643.2999267578125	2	643.377352	1284.74015	2.7169	0.001748	3.3762	0.0021722	6.0931	0.0039202	643.3795618374205	100.62	0.57703	100.62	100.36	100.94	0					31	13	4	0	0	0	0.026068	1	11158	11158		4.6126	0	1	747860			57570	34157	47496	47538	63023	63023					0.10917002177438917
TNLVYKRW	8	Unmodified	_TNLVYKRW_					0	0	0			REV__tr|A0A7D7A5U3|A0A7D7A5U3_9CLOTMethionyl-tRNAsynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07510PE=3SV=1	REV__tr|A0A7D7A5U3|A0A7D7A5U3_9CLOTMethionyl-tRNAsynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07510PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2831420898438	2	540.303458	1078.59236	0.99811	0.00053928	0.66467	0.00035912	1.6628	0.0008984	540.3037616962719	142.65	0.49963	142.65	142.23	142.73	0					15	9	3	0	0	0	0.028476	1	16652	16652		19.36	0	1	37112	+		57571	32643	47497	47539	63024	63024					0.05621155434073444
TNMKIETK	8	Unmodified	_TNMKIETK_					0	0	0		tr|A0A7D6ZN19|A0A7D6ZN19_9CLOTBeta-propellerdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14325PE=4SV=1	tr|A0A7D6ZN19|A0A7D6ZN19_9CLOTBeta-propellerdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14325PE=4SV=1	tr|A0A7D6ZN19|A0A7D6ZN19_9CLOTBeta-propellerdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14325PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	482.7605285644531	2	482.760235	963.505917	2.1391	0.0010327	-2.3365	-0.001128	-0.1974	-9.5296E-05	482.7588804234167	57.803	3.1186	54.676	53.456	56.575	-3.1264					158	85	3	0	0	0	0.7202	1	1687	1687		39.253	1.4413	1	89902			57572	35672	47498	47540	63025	63025					0.022704078172182562
TNPIDSVITN	10	Unmodified	_TNPIDSVITN_					0	0	0			REV__tr|A0A7D6ZI38|A0A7D6ZI38_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05590PE=4SV=1	REV__tr|A0A7D6ZI38|A0A7D6ZI38_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05590PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.2927856445312	2	537.277303	1072.54005	-0.27853	-0.00014965	-0.12208	-6.5592E-05	-0.40061	-0.00021524	537.2769581796096	71.106	0.8287	68.599	68.029	68.858	-2.5072					25	15	3	0	0	0	0.026666	1	5717	5717		29.551	0	1	22558	+		57573	32046	47499	47541	63026	63026					0.006685275098334387
TNPIERILVL	10	Unmodified	_TNPIERILVL_					0	0	0			REV__tr|A0A553SHZ8|A0A553SHZ8_NIACITypeVIIsecretionproteinEssCOS=NialliacirculansOX=1397GN=essCPE=4SV=1	REV__tr|A0A553SHZ8|A0A553SHZ8_NIACITypeVIIsecretionproteinEssCOS=NialliacirculansOX=1397GN=essCPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3563842773438	2	584.358431	1166.70231	-2.312	-0.0013511	-1.149	-0.00067141	-3.461	-0.0020225	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.75313	1	14538	14538		24.519	1.9395	1	180810	+		57574	29856	47500	47542	63027	63027					0.1256253598260173
TNPILKDI	8	Unmodified	_TNPILKDI_					0	0	0			REV__nc|ENSG00000159110|P48551-3|IFNAR2	REV__nc|ENSG00000159110|P48551-3|IFNAR2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.7438659667969	2	457.271293	912.528032	-0.24239	-0.00011084	-2.3277	-0.0010644	-2.5701	-0.0011752	457.27215738731434	74.524	0.77156	71.293	70.906	71.678	-3.2308					30	15	3	0	0	0	0.028476	1	5845	5845		63.306	9.9548	1	25469	+		57575	20594	47501	47543	63028	63028					0.06826955557278325
TNQAKIKSSL	10	Unmodified	_TNQAKIKSSL_					0	0	0			REV__tr|A0A7D7A2X2|A0A7D7A2X2_9CLOTPhagetailtapemeasureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10220PE=4SV=1	REV__tr|A0A7D7A2X2|A0A7D7A2X2_9CLOTPhagetailtapemeasureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10220PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	545.316650390625	2	545.316763	1088.61897	-1.7047	-0.0009296	1.3026	0.00071033	-0.40209	-0.00021926	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.69073	1	14175	14175		31.53	7.0106	1	202430	+		57576	32557	47502	47544	63029	63029					0.07820799534761136
TNQAKIKSSL	10	Unmodified	_TNQAKIKSSL_					0	0	0			REV__tr|A0A7D7A2X2|A0A7D7A2X2_9CLOTPhagetailtapemeasureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10220PE=4SV=1	REV__tr|A0A7D7A2X2|A0A7D7A2X2_9CLOTPhagetailtapemeasureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10220PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3156127929688	2	545.316763	1088.61897	-1.9768	-0.001078	1.7183	0.00093701	-0.25853	-0.00014098	545.3174971514211	139.12	3.9663	138.06	135.98	139.95	-1.0595					186	80	3	0	0	0	0.73063	1	11474	11474		27.047	4.0048	1	94142	+		57577	32557	47502	47544	63030	63030					0.07820799534761136
TNRILNRR	8	Unmodified	_TNRILNRR_					0	0	0			REV__tr|A0A7D7A5N9|A0A7D7A5N9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06880PE=4SV=1	REV__tr|A0A7D7A5N9|A0A7D7A5N9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06880PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.7733154296875	2	521.815056	1041.61556	-1.4104	-0.00073598	-2.1246	-0.0011087	-3.535	-0.0018446	522.3156910237088	27.216	0.1983	27.216	27.043	27.241	0					5	3	2	0	0	0	0.028476	1	766	766		25.574	0.12388	1	10219	+		57578	32640	47503	47545	63031	63031					0.09641594271420217
TNRPPALAITY	11	Unmodified	_TNRPPALAITY_					0	0	0		ADCY4|p.T926Afs*10|1|0.07|ENSG00000129467|chr14:24319388-24319394|CGATGGT/-|frameshift_variant;ENSG00000129467|ENST00000418030|ADCY4;ENST00000557056.5_1_14:24792528-24800258:-|nuORF;nc|ENSG00000129467|Q8NFM4-2|ADCY4;ENST00000554577.5_1_14:24791640-24799178:-|nuORF	ADCY4|p.T926Afs*10|1|0.07|ENSG00000129467|chr14:24319388-24319394|CGATGGT/-|frameshift_variant	ADCY4|p.T926Afs*10|1|0.07|ENSG00000129467|chr14:24319388-24319394|CGATGGT/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	608.8362426757812	2	608.837862	1215.66117	-3.9036	-0.0023766	2.3802	0.0014491	-1.5234	-0.0009275	608.8391511731406	151.54	1.2369	151.31	150.94	152.18	-0.22697					74	24	4	0	0	0	0.7046	1	15372	15372		28.081	1.3886	1	158260			57579	35	47504	47546	63032	63032					0.06196774943123273
TNRTILKED	9	Unmodified	_TNRTILKED_					0	0	0		nc|ENSG00000026751|Q9NQ25-6|SLAMF7;ENSG00000026751|ENST00000368043|SLAMF7;nc|ENSG00000026751|Q9NQ25-7|SLAMF7;nc|ENSG00000026751|Q9NQ25-2|SLAMF7	nc|ENSG00000026751|Q9NQ25-6|SLAMF7	nc|ENSG00000026751|Q9NQ25-6|SLAMF7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.3040771484375	2	545.29857	1088.58259	-0.37086	-0.00020223	1.958	0.0010677	1.5871	0.00086545	545.8015858243665	78.652	0.75202	75.9	75.522	76.274	-2.7514					24	15	2	0	0	0	0.027418	1	6388	6388		44.377	0	1	185850			57580	1052	47505	47547	63033	63033					0.04183922638048898
TNSELFLL	8	Unmodified	_TNSELFLL_					0	0	0		tr|A0A7D6VWD4|A0A7D6VWD4_9CLOTHEATrepeatdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07970PE=4SV=1	tr|A0A7D6VWD4|A0A7D6VWD4_9CLOTHEATrepeatdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07970PE=4SV=1	tr|A0A7D6VWD4|A0A7D6VWD4_9CLOTHEATrepeatdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07970PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	468.753662109375	2	468.755475	935.496398	0.10784	5.0549E-05	-4.4148	-0.0020695	-4.307	-0.0020189	468.7533279216614	45.045	0.62645	45.045	44.662	45.289	0					29	13	3	0	0	0	0.59148	1	3085	3085		65.803	0	1	538530			57581	35246	47506	47548	63034	63034					0.026069628033383196
TNSHLEKK	8	Unmodified	_TNSHLEKK_					0	0	0		ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	ENSG00000111371|ENST00000398637|SLC38A1	MULTI-MSMS	OvCa99_classI_Rep5	1	478.7621154785156	2	478.761623	955.508694	-0.50998	-0.00024416	0.62859	0.00030094	0.11861	5.6784E-05	478.7617608972621	59.154	1.4598	59.154	58.892	60.352	0					64	37	3	0	0	0	0.67872	1	5096	5096		47.657	6.8792	1	2466400			57582	2824	47507	47549	63035	63035					0.029159992663721823
TNSKQVLIV	9	Unmodified	_TNSKQVLIV_					0	0	0			REV__tr|A0A553SGY6|A0A553SGY6_NIACIFoldaseproteinPrsAOS=NialliacirculansOX=1397GN=prsAPE=3SV=1	REV__tr|A0A553SGY6|A0A553SGY6_NIACIFoldaseproteinPrsAOS=NialliacirculansOX=1397GN=prsAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	501.3022155761719	2	501.303124	1000.5917	-1.2153	-0.00060923	1.0717	0.00053725	-0.1436	-7.1985E-05	501.3034674423479	99.272	2.0867	98.379	97.707	99.794	-0.89305					95	41	4	0	0	0	0.33652	1	9049	9049		58.782	2.0609	1	344590	+		57583	29751	47508	47550	63036	63036					0.09142315994381534
TNTRQHYRQSY	11	Unmodified	_TNTRQHYRQSY_					0	0	0			REV__ENSG00000115414|ENST00000354785|FN1	REV__ENSG00000115414|ENST00000354785|FN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.7675476074219	3	485.235884	1452.68582	-0.45607	-0.0002213	2.4153	0.001172	1.9592	0.00095069	485.23679230091847	51.69	0.92164	51.69	51.248	52.17	0					37	21	3	0	0	0	0.026058	1	4055	4055		24.276	0	1	802370	+		57584	18242	47509	47551	63037	63037					-0.02241196921431765
TNVEVNVYVD	10	Unmodified	_TNVEVNVYVD_					0	0	0			REV__tr|A0A553SJ71|A0A553SJ71_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_16230PE=4SV=1	REV__tr|A0A553SJ71|A0A553SJ71_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_16230PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.7493896484375	2	576.282586	1150.55062	0.68985	0.00039755	-3.1423	-0.0018109	-2.4525	-0.0014133	576.2807299967803	114.98	0.55806	114.98	114.79	115.35	0					17	11	3	0	0	0	0.026968	1	13150	13150		29.17	0.020503	1	75599	+		57585	29972	47510	47552	63038	63038					-0.018634898357504426
TNVYWMKV	8	Unmodified	_TNVYWMKV_					0	0	0		ENST00000562949.1_2_16:69362927-69368484:-|nuORF;ENST00000306875.8_2_16:69362927-69364884:-|nuORF;ENSG00000258429|ENST00000288022|PDF	ENST00000562949.1_2_16:69362927-69368484:-|nuORF	ENST00000562949.1_2_16:69362927-69368484:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2755737304688	2	520.76532	1039.51609	-0.80364	-0.00041851	-3.3869	-0.0017638	-4.1905	-0.0021823	520.7636961721346	73.339	0.52582	73.339	72.994	73.52	0					21	12	2	0	0	0	0.028476	1	7141	7141		10.866	0	1	285220			57586	9479	47511	47553	63039	63039					-0.002089844575493771
TPAAVAFF	8	Unmodified	_TPAAVAFF_					0	0	0			REV__ENST00000378103.7_3_9:35748839-35749166:-|nuORF	REV__ENST00000378103.7_3_9:35748839-35749166:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	412.2204284667969	2	412.221072	822.42759	1.9325	0.00079662	-1.5505	-0.00063915	0.382	0.00015747	412.2203090945695	127.92	0.98666	127.69	127.44	128.43	-0.22697					42	19	3	0	0	0	0.63104	1	12534	12534		57.453	8.2419	1	133760	+		57587	25134	47512	47554	63040	63040					0.00927343294279126
TPAAVAFF	8	Unmodified	_TPAAVAFF_					0	0	0			REV__ENST00000378103.7_3_9:35748839-35749166:-|nuORF	REV__ENST00000378103.7_3_9:35748839-35749166:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	412.2198791503906	2	412.221072	822.42759	1.6419	0.00067681	-1.2008	-0.000495	0.44107	0.00018182	412.2204880004127	129.13	1.1861	127.67	127.35	128.53	-1.4565					47	23	3	0	0	0	0.69415	1	12386	12386		44.531	3.9584	1	137310	+		57588	25134	47512	47554	63041	63041					0.00927343294279126
TPAAVRELVL	10	Unmodified	_TPAAVRELVL_					0	0	0		nc|ENSG00000136938|Q92688-2|ANP32B;ENSG00000136938|ENST00000339399|ANP32B	nc|ENSG00000136938|Q92688-2|ANP32B	nc|ENSG00000136938|Q92688-2|ANP32B	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.8229370117188	2	534.824224	1067.63389	-1.8964	-0.0010143	1.5281	0.00081725	-0.36836	-0.00019701	534.8249266947878	99.917	1.3776	97.592	97.263	98.641	-2.3253					62	26	3	0	0	0	0.53396	1	8928	8928		50.034	5.9167	1	285940			57589	4538	47513	47555	63042	63042					0.10278291402732975
TPAAVRELVL	10	Unmodified	_TPAAVRELVL_					0	0	0		nc|ENSG00000136938|Q92688-2|ANP32B;ENSG00000136938|ENST00000339399|ANP32B	nc|ENSG00000136938|Q92688-2|ANP32B	nc|ENSG00000136938|Q92688-2|ANP32B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	534.824224	1067.63389	-1.3073	-0.0006992	0.81562	0.00043622	-0.49172	-0.00026298	534.8244832634131	98.383	1.3863	97.49	97.168	98.554	-0.89306	-0.070623	0.00019884	NaN	50.034	61	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	232270			57590	4538	47513	47555							0.10278291402732975
TPAAVRELVL	10	Unmodified	_TPAAVRELVL_					0	0	0		nc|ENSG00000136938|Q92688-2|ANP32B;ENSG00000136938|ENST00000339399|ANP32B	nc|ENSG00000136938|Q92688-2|ANP32B	nc|ENSG00000136938|Q92688-2|ANP32B	MULTI-MATCH	OvCa9_classI_Rep3	3		2	534.824224	1067.63389	0.50411	0.00026961	-0.74519	-0.00039855	-0.24108	-0.00012894	534.8236729372575	99.284	1.022	97.599	97.322	98.344	-1.685	0.038649	-0.0014707	NaN	50.034	54	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	299730			57591	4538	47513	47555							0.10278291402732975
TPAFPRSLL	9	Unmodified	_TPAFPRSLL_					0	0	0		CTNNA1-KDM3B|1|fusion;nc|ENSG00000120733|Q7LBC6-2|KDM3B;ENSG00000120733|ENST00000314358|KDM3B	CTNNA1-KDM3B|1|fusion	CTNNA1-KDM3B|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.2925109863281	2	501.292559	1000.57057	-1.5243	-0.00076411	1.2924	0.00064787	-0.23188	-0.00011624	501.29306026199856	106.71	1.3487	104.83	104.29	105.64	-1.8785					71	25	3	0	0	0	0.26076	3	9724	9714;9724;9738		67.494	21.233	1	191460			57592	693	47514	47556	63043;63044;63045	63044					0.07030350685522535
TPAFPRSLL	9	Unmodified	_TPAFPRSLL_					0	0	0		CTNNA1-KDM3B|1|fusion;nc|ENSG00000120733|Q7LBC6-2|KDM3B;ENSG00000120733|ENST00000314358|KDM3B	CTNNA1-KDM3B|1|fusion	CTNNA1-KDM3B|1|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	501.292559	1000.57057	-0.92474	-0.00046357	0.88211	0.0004422	-0.042627	-2.1369E-05	501.29275313828225	105.21	1.6889	104.78	104.16	105.85	-0.43642	-0.029587	0.00012647	NaN	67.494	95	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160240			57593	693	47514	47556							0.07030350685522535
TPAFPRSLL	9	Unmodified	_TPAFPRSLL_					0	0	0		CTNNA1-KDM3B|1|fusion;nc|ENSG00000120733|Q7LBC6-2|KDM3B;ENSG00000120733|ENST00000314358|KDM3B	CTNNA1-KDM3B|1|fusion	CTNNA1-KDM3B|1|fusion	MULTI-MATCH	OvCa9_classI_Rep3	3		2	501.292559	1000.57057	0.10512	5.2698E-05	-0.32845	-0.00016465	-0.22333	-0.00011195	501.29226440504783	106.16	1.6332	104.81	104.09	105.73	-1.3482	0.0072291	-0.0010872	NaN	67.494	77	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	188060			57594	693	47514	47556							0.07030350685522535
TPAIARRVP	9	Unmodified	_TPAIARRVP_					0	0	0			REV__ENSG00000278803|ENST00000458091|PWWP4	REV__ENSG00000278803|ENST00000458091|PWWP4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.2696533203125	2	490.803626	979.592698	0.061303	3.0088E-05	-0.54442	-0.0002672	-0.48312	-0.00023712	490.8032853266867	58.581	1.5932	55.189	54.852	56.445	-3.392					57	31	3	0	0	0	0.027462	1	4004	4004		20.947	10.081	1	335540	+		57595	23646	47515	47557	63046	63046					0.10208575153944821
TPAIATRAR	9	Unmodified	_TPAIATRAR_					0	0	0			REV__ENSG00000278803|ENST00000458091|PWWP4	REV__ENSG00000278803|ENST00000458091|PWWP4	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.7818908691406	2	478.785433	955.556313	-0.2205	-0.00010557	-0.26364	-0.00012623	-0.48415	-0.0002318	478.7852640747383	43.27	0.59432	43.27	43.1	43.694	0					16	13	2	0	0	0	0.027453	1	2846	2846		30.318	0	1	245510	+		57596	23646	47516	47558	63047	63047					0.0767569825721921
TPALLFLLLLL	11	Unmodified	_TPALLFLLLLL_					0	0	0		ENST00000300952.6_1_19:1257449-1257602:+|nuORF	ENST00000300952.6_1_19:1257449-1257602:+|nuORF	ENST00000300952.6_1_19:1257449-1257602:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	409.60784912109375	3	409.608937	1225.80498	1.1396	0.00046679	-3.5153	-0.0014399	-2.3757	-0.00097312	409.6074659919173	107.95	5.8573	106.76	106.27	112.13	-1.1978					409	114	4	0	0	0	0.65063	1	7961	7961		40.058	3.6114	1	1037400			57597	10178	47517	47559	63048	63048					0.20111228721384578
TPAPKHRSGP	10	Unmodified	_TPAPKHRSGP_					0	0	0			REV__ENSG00000149679|ENST00000279101|CABLES2	REV__ENSG00000149679|ENST00000279101|CABLES2	MULTI-MSMS	OvCa99_classI_Rep5	1	524.2874145507812	2	524.28834	1046.56213	-1.062	-0.0005568	-0.4585	-0.00024039	-1.5205	-0.00079719	524.2882742456546	39.779	3.3775	39.779	39.505	42.883	0					203	76	6	0	0	0	0.5675	1	2368	2368		45.972	0.020292	1	97899000	+		57598	20175	47518	47560	63049	63049					0.04070796768905893
TPAPRPAVL	9	Unmodified	_TPAPRPAVL_					0	0	0		ENST00000262518.8_1_16:30710550-30715400:+|nuORF;ENST00000411466.6_3_16:30709553-30715400:+|nuORF	ENST00000262518.8_1_16:30710550-30715400:+|nuORF	ENST00000262518.8_1_16:30710550-30715400:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	461.2804260253906	2	461.279452	920.544351	-1.1763	-0.0005426	0.493	0.00022741	-0.6833	-0.00031519	461.2798475866275	69.445	1.7103	65.964	65.42	67.13	-3.4812					95	34	5	0	0	0	0.11471	2	5206	5194;5206		93.195	32.224	1	549610			57599	9893	47519	47561	63050;63051	63051					0.08090081514046688
TPAPRPAVL	9	Unmodified	_TPAPRPAVL_					0	0	0		ENST00000262518.8_1_16:30710550-30715400:+|nuORF;ENST00000411466.6_3_16:30709553-30715400:+|nuORF	ENST00000262518.8_1_16:30710550-30715400:+|nuORF	ENST00000262518.8_1_16:30710550-30715400:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	461.279452	920.544351	-0.64881	-0.00029928	0.85853	0.00039602	0.20972	9.6737E-05	461.2795875887963	66.277	0.3956	66.277	66.096	66.491	0	0.20008	0.00026421	NaN	93.195	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	837270			57600	9893	47519	47561							0.08090081514046688
TPAPRPAVL	9	Unmodified	_TPAPRPAVL_					0	0	0		ENST00000262518.8_1_16:30710550-30715400:+|nuORF;ENST00000411466.6_3_16:30709553-30715400:+|nuORF	ENST00000262518.8_1_16:30710550-30715400:+|nuORF	ENST00000262518.8_1_16:30710550-30715400:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	461.279452	920.544351	-1.0589	-0.00048847	0.4672	0.00021551	-0.59175	-0.00027296	461.279827719268	68.61	1.2902	65.989	65.425	66.715	-2.6203	-0.087428	-9.6817E-05	NaN	93.195	73	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161140			57601	9893	47519	47561							0.08090081514046688
TPAPRPLLL	9	Unmodified	_TPAPRPLLL_					0	0	0		ENSG00000109686|ENST00000604030|SH3D19;nc|ENSG00000109686|Q5HYK7-3|SH3D19;nc|ENSG00000109686|Q5HYK7-2|SH3D19;nc|ENSG00000109686|Q5HYK7|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	MULTI-MSMS	OvCa9_classI_Rep2	2	489.3104553222656	2	489.310752	976.606951	0.13593	6.6514E-05	-0.61959	-0.00030317	-0.48365	-0.00023666	489.31030560644126	95.074	1.5343	94.046	93.678	95.212	-1.0281					63	30	3	0	0	0	0.083631	2	8533	8533;8539		101.6	41.307	1	354300			57602	2727	47520	47562	63052;63053	63052					0.11771227582244137
TPAPRPLLL	9	Unmodified	_TPAPRPLLL_					0	0	0		ENSG00000109686|ENST00000604030|SH3D19;nc|ENSG00000109686|Q5HYK7-3|SH3D19;nc|ENSG00000109686|Q5HYK7-2|SH3D19;nc|ENSG00000109686|Q5HYK7|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	MULTI-MSMS	OvCa9_classI_Rep3	3	489.31097412109375	2	489.310752	976.606951	-1.1785	-0.00057664	0.62835	0.00030746	-0.55013	-0.00026918	489.3109085469727	95.899	1.5647	94.07	93.78	95.345	-1.8286					72	30	3	0	0	0	0.16562	3	6284	6276;6284;6290		82.241	38.124	1	427050			57603	2727	47520	47562	63054;63055;63056	63055					0.11771227582244137
TPAPRPLLL	9	Unmodified	_TPAPRPLLL_					0	0	0		ENSG00000109686|ENST00000604030|SH3D19;nc|ENSG00000109686|Q5HYK7-3|SH3D19;nc|ENSG00000109686|Q5HYK7-2|SH3D19;nc|ENSG00000109686|Q5HYK7|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	ENSG00000109686|ENST00000604030|SH3D19	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.3115234375	2	489.310752	976.606951	0.85631	0.000419	-1.1289	-0.00055236	-0.27254	-0.00013336	489.310023233558	96.535	1.4096	94.11	93.76	95.169	-2.4256					64	27	4	0	0	0	0.1804	2	8524	8524;8538		79.713	19.419	1	402080			57604	2727	47520	47562	63057;63058	63057					0.11771227582244137
TPARKKRL	8	Unmodified	_TPARKKRL_					0	0	0		nc|ENSG00000132313|Q9NZE8-2|MRPL35;ENSG00000132313|ENST00000337109|MRPL35	nc|ENSG00000132313|Q9NZE8-2|MRPL35	nc|ENSG00000132313|Q9NZE8-2|MRPL35	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.3024597167969	2	485.319443	968.624333	-0.60378	-0.00029303	3.161	0.0015341	2.5573	0.0012411	485.3208645971224	106.13	1.4464	104.12	103.74	105.19	-2.0161					59	27	3	0	0	0	0.028476	1	9659	9659		35.618	5.1146	1	237940			57605	4125	47521	47563	63059	63059					0.13876567907891513
TPCPLTSHVD	10	Unmodified	_TPCPLTSHVD_					0	0	0		ENSG00000188766|ENST00000691638|SPRED3	ENSG00000188766|ENST00000691638|SPRED3	ENSG00000188766|ENST00000691638|SPRED3	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.3518676757812	2	535.252774	1068.491	1.5021	0.00080402	1.388	0.00074292	2.8901	0.0015469	535.2535342798121	119.87	0.80431	119.87	119.33	120.14	0					30	19	2	0	0	0	0.027056	1	13787	13787		9.7057	0	1	133510			57606	8499	47522	47564	63060	63060					-0.040510840507977264
TPCWDVFQITR	11	Unmodified	_TPCWDVFQITR_					0	0	0			REV__nc|ENSG00000183785|Q9NY65-2|TUBA8	REV__nc|ENSG00000183785|Q9NY65-2|TUBA8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	455.759033203125	3	455.892179	1364.65471	-0.14449	-6.5872E-05	-4.1363	-0.0018857	-4.2808	-0.0019516	456.22427147868336	51.564	0.75406	48.391	48.072	48.826	-3.1734					19	14	2	0	0	0	0.025908	1	3082	3082		27.644	9.3123	1	60525	+		57607	16981	47523	47565	63061	63061					-0.013034862799031544
TPDAMKAAM	9	Unmodified	_TPDAMKAAM_					0	0	0		ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	468.2566223144531	2	468.219888	934.425224	-0.1084	-5.0756E-05	0.081571	3.8193E-05	-0.026832	-1.2563E-05	468.21981649073365	63.476	0.6702	60.001	59.82	60.49	-3.475					22	13	2	0	0	0	0.027462	1	4486	4486		27.882	0	1	82689			57608	1761	47524	47566	63062	63062					-0.04461196497345554
TPDAMKAAM	9	Unmodified	_TPDAMKAAM_					0	0	0		ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	ENSG00000087086|ENST00000331825|FTL	MULTI-MATCH	OvCa9_classI_Rep2	2		2	468.219888	934.425224	-2.0045	-0.00093855	1.7328	0.00081132	-0.27173	-0.00012723	468.2206100438546	62.974	0.68663	60.23	59.951	60.638	-2.7444	0.11442	0.0012289	NaN	47.657	14	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19194			57609	1761	47524	47566							-0.04461196497345554
TPDIHICGIC	10	Unmodified	_TPDIHICGIC_					0	0	0		ZFP64|p.T573Hfs*41|1|0.12|ENSG00000020256|chr20:52152476-52152477|-/A|frameshift_variant;nc|ENSG00000020256|Q9NTW7-6|ZFP64;nc|ENSG00000020256|Q9NTW7-4|ZFP64;ENSG00000020256|ENST00000216923|ZFP64;nc|ENSG00000020256|Q9NTW7-3|ZFP64;ZFP64|p.V458Sfs*156|1|0.05|ENSG00000020256|chr20:52152820-52152821|-/T|frameshift_variant;nc|ENSG00000020256|Q9NTW7|ZFP64	ZFP64|p.T573Hfs*41|1|0.12|ENSG00000020256|chr20:52152476-52152477|-/A|frameshift_variant	ZFP64|p.T573Hfs*41|1|0.12|ENSG00000020256|chr20:52152476-52152477|-/A|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2750244140625	2	536.25172	1070.48889	1.9806	0.0010621	1.4675	0.00078694	3.4481	0.0018491	536.2521042880162	136.53	0.57193	136.53	136.3	136.87	0					17	11	2	0	0	0	0.026768	1	15889	15889		24.203	0	1	57099			57610	1022	47525	47567	63063	63063					-0.04353836060226968
TPDQQIVYT	9	Unmodified	_TPDQQIVYT_					0	0	0			REV__nc|ENSG00000081014|Q9UPM8-2|AP4E1	REV__nc|ENSG00000081014|Q9UPM8-2|AP4E1	MULTI-MSMS	OvCa9_classI_Rep2	2	532.7628173828125	2	532.766571	1063.51859	-2.5391	-0.0013527	-4.0703	-0.0021685	-6.6094	-0.0035212	532.7645469241053	118.72	1.6329	118.57	117.94	119.57	-0.14755					101	32	5	0	0	0	0.16562	1	11421	11421		82.241	23.459	1	241770	+		57611	17063	47526	47568	63064	63064					-0.010628575189002731
TPDQQIVYT	9	Unmodified	_TPDQQIVYT_					0	0	0			REV__nc|ENSG00000081014|Q9UPM8-2|AP4E1	REV__nc|ENSG00000081014|Q9UPM8-2|AP4E1	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.7630615234375	2	532.766571	1063.51859	-2.3357	-0.0012444	-4.3047	-0.0022934	-6.6404	-0.0035378	532.7643813734192	119.79	1.6656	118.45	117.88	119.55	-1.3444					90	31	5	0	0	0	0.33652	1	11252	11252		58.782	6.4828	1	553200	+		57612	17063	47526	47568	63065	63065					-0.010628575189002731
TPDTGRILSKL	11	Unmodified	_TPDTGRILSKL_					0	0	0		nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF;nc|ENSG00000159352|P55036-2|PSMD4;ENSG00000159352|ENST00000368884|PSMD4;ENST00000462970.5_1_1:151227258-151237442:+|nuORF	nc|ENSG00000180764|A2A3N6|PIPSL	nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-MSMS	OvCa9_classI_Rep2	2	600.850341796875	2	600.85097	1199.68739	-0.16418	-9.8649E-05	-0.41309	-0.0002482	-0.57727	-0.00034685	600.8507113338255	82.686	2.047	81.087	80.697	82.744	-1.5988					130	40	6	0	0	0	0.04326	7	7054	7045;7048;7054;7060;7066;7073;7080		102.95	21.172	1	1963700			57613	12529	47527	47569	63066;63067;63068;63069;63070;63071;63072	63068					0.0955304411461384
TPDTGRILSKL	11	Unmodified	_TPDTGRILSKL_					0	0	0		nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF;nc|ENSG00000159352|P55036-2|PSMD4;ENSG00000159352|ENST00000368884|PSMD4;ENST00000462970.5_1_1:151227258-151237442:+|nuORF	nc|ENSG00000180764|A2A3N6|PIPSL	nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-MSMS	OvCa9_classI_Rep2	2	400.90264892578125	3	400.903072	1199.68739	1.9621	0.00078662	-2.2187	-0.00088949	-0.25661	-0.00010288	400.90216541386343	82.659	1.9425	81.06	80.645	82.588	-1.5989					100	38	4	0	0	0	0.16771	2	7056	7056;7062		84.31	22.619	1	1122800			57614	12529	47527	47569	63073;63074	63073					0.0955304411461384
TPDTGRILSKL	11	Unmodified	_TPDTGRILSKL_					0	0	0		nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF;nc|ENSG00000159352|P55036-2|PSMD4;ENSG00000159352|ENST00000368884|PSMD4;ENST00000462970.5_1_1:151227258-151237442:+|nuORF	nc|ENSG00000180764|A2A3N6|PIPSL	nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-MSMS	OvCa9_classI_Rep3	3	600.8516845703125	2	600.85097	1199.68739	0.98625	0.00059259	-1.6165	-0.00097125	-0.63021	-0.00037866	600.8499806537789	83.569	2.7296	81.308	80.766	83.495	-2.261					154	56	5	0	0	0	0.047246	8	4794	4773;4778;4784;4789;4794;4800;4806;4814		117.71	42.662	1	3159400			57615	12529	47527	47569	63075;63076;63077;63078;63079;63080;63081;63082	63079					0.0955304411461384
TPDTGRILSKL	11	Unmodified	_TPDTGRILSKL_					0	0	0		nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF;nc|ENSG00000159352|P55036-2|PSMD4;ENSG00000159352|ENST00000368884|PSMD4;ENST00000462970.5_1_1:151227258-151237442:+|nuORF	nc|ENSG00000180764|A2A3N6|PIPSL	nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-MSMS	OvCa9_classI_Rep4_	4	600.85205078125	2	600.85097	1199.68739	0.82876	0.00049796	-1.2691	-0.00076254	-0.44034	-0.00026458	600.8501752695332	83.716	2.1072	81.053	80.437	82.544	-2.6629					128	43	5	0	0	0	0.017823	6	6986	6962;6974;6986;6998;7012;7030		117.71	56.014	1	2139500			57616	12529	47527	47569	63083;63084;63085;63086;63087;63088	63085					0.0955304411461384
TPDVMLLQQN	10	Unmodified	_TPDVMLLQQN_					0	0	0		ENST00000580482.5_1_17:63793289-63848140:-|nuORF	ENST00000580482.5_1_17:63793289-63848140:-|nuORF	ENST00000580482.5_1_17:63793289-63848140:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	579.7915649414062	2	579.794806	1157.57506	-4.3077	-0.0024976	1.0169	0.00058959	-3.2908	-0.001908	579.7951709807556	145.58	0.99438	144.6	144.34	145.33	-0.97301					55	19	4	0	0	0	0.67931	1	12200	12200		32.812	2.4947	1	106300			57617	13986	47528	47570	63089	63089					0.0025744704614680813
TPEAAKELL	9	Unmodified	_TPEAAKELL_					0	0	0			REV__ENSG00000099821|ENST00000588649|POLRMT	REV__ENSG00000099821|ENST00000588649|POLRMT	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.274658203125	2	486.274032	970.533512	0.041941	2.0395E-05	-0.60136	-0.00029243	-0.55942	-0.00027203	486.2735759942041	78.751	0.94266	76	75.761	76.703	-2.7514					38	19	2	0	0	0	0.3076	1	6371	6371		62.107	1.1355	1	454450	+		57618	17336	47529	47571	63090	63090					0.0470663434908829
TPEAWLQLV	9	Unmodified	_TPEAWLQLV_					0	0	0			REV__ENST00000486102.5_1_3:49728598-49742525:+|nuORF	REV__ENST00000486102.5_1_3:49728598-49742525:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.310791015625	2	528.78985	1055.56515	-0.99543	-0.00052637	3.166	0.0016742	2.1706	0.0011478	529.2915527266889	100.58	0.58949	98.974	98.755	99.344	-1.6053					13	11	2	0	0	0	0.027462	1	6817	6817		14.865	0	1	22753	+		57619	26578	47530	47572	63091	63091					0.03958627103043
TPEDGPDVIE	10	Unmodified	_TPEDGPDVIE_					0	0	0			REV__ENSG00000150893|ENST00000280481|FREM2	REV__ENSG00000150893|ENST00000280481|FREM2	MULTI-MSMS	OvCa9_classI_Rep3	3	536.245361328125	2	536.245669	1070.47678	0.97643	0.00052361	-0.78722	-0.00042214	0.18921	0.00010146	536.2452380983605	114.48	3.218	113.43	113.05	116.27	-1.055					122	64	2	0	0	0	0.41408	2	8446	8446;8483		66.429	3.4509	1	980200	+		57620	20206	47531	47573	63092;63093	63092					-0.05563457998096055
TPEEIGEDMDL	11	Unmodified	_TPEEIGEDMDL_					0	0	0		tr|A0A553SKM1|A0A553SKM1_NIACIRNApolymerasesigmafactorSigAOS=NialliacirculansOX=1397GN=rpoDPE=3SV=1	tr|A0A553SKM1|A0A553SKM1_NIACIRNApolymerasesigmafactorSigAOS=NialliacirculansOX=1397GN=rpoDPE=3SV=1	tr|A0A553SKM1|A0A553SKM1_NIACIRNApolymerasesigmafactorSigAOS=NialliacirculansOX=1397GN=rpoDPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	624.7683715820312	2	624.768651	1247.52275	1.9299	0.0012058	-1.4422	-0.00090106	0.48769	0.0003047	625.2694083549616	122.22	1.0554	122.22	121.94	123	0					36	22	3	0	0	0	0.70142	1	14062	14062		29.17	2.4771	1	433440			57621	33632	47532	47574	63094	63094					-0.09111180878130654
TPEEKSAVTAL	11	Unmodified	_TPEEKSAVTAL_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	OvCa99_classI_Rep5	1	573.307861328125	2	573.306061	1144.59757	-0.59749	-0.00034254	0.36682	0.0002103	-0.23067	-0.00013224	573.3062335732097	64.396	1.4543	64.396	64.132	65.586	0					76	35	4	0	0	0	0.063347	2	5866	5838;5866		107.45	44.149	1	23186000		+	57622	9402	47533	47575	63095;63096	63096					0.0310536971539932
TPEEKSAVTAL	11	Unmodified	_TPEEKSAVTAL_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	OvCa9_classI_Rep4_	4	573.3047485351562	2	573.306061	1144.59757	0.92398	0.00052972	-1.6855	-0.0009663	-0.76151	-0.00043658	573.3051413617451	67.553	1.325	64.062	63.689	65.014	-3.4902					68	26	4	0	0	0	0.50203	1	4965	4965		53.597	9.2197	1	671470		+	57623	9402	47533	47575	63097	63097					0.0310536971539932
TPEEKSAVTAL	11	Unmodified	_TPEEKSAVTAL_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MATCH	OvCa9_classI_Rep2	2		2	573.306061	1144.59757	-0.87404	-0.00050109	0.93437	0.00053568	0.060329	3.4587E-05	573.3066414256792	66.835	1.6867	64.174	63.205	64.892	-2.661	-0.036735	0.0011271	NaN	107.45	61	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141230		+	57624	9402	47533	47575							0.0310536971539932
TPEENFYI	8	Unmodified	_TPEENFYI_					0	0	0			REV__ENSG00000132681|ENST00000368081|ATP1A4	REV__ENSG00000132681|ENST00000368081|ATP1A4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3152160644531	2	506.73474	1011.45493	0.24796	0.00012565	2.4263	0.0012295	2.6742	0.0013551	506.73508608873004	114.7	0.62924	113.3	113.04	113.67	-1.3977					18	11	3	0	0	0	0.028476	1	10631	10631		27.882	0	1	18071	+		57625	19095	47534	47576	63098	63098					-0.050342179560061595
TPEGIGYENEA	11	Unmodified	_TPEGIGYENEA_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.8045654296875	2	590.26185	1178.50915	2.4217	0.0014294	1.0902	0.00064352	3.5119	0.0020729	590.262260564451	91.611	0.71943	91.611	91.332	92.052	0					35	16	3	0	0	0	0.025605	1	9844	9844		72.879	19.943	1	685070	+		57626	28942;32737	47535	47577	63099	63099					-0.07296670595087562
TPEGRVIC	8	Carbamidomethyl (C)	_TPEGRVIC(Carbamidomethyl (C))_	TPEGRVIC(1)		TPEGRVIC(66)		0	1	0		OSBPL10|p.E453G|1|0.18|ENSG00000144645|chr3:31684002-31684002|T/C|missense_variant	OSBPL10|p.E453G|1|0.18|ENSG00000144645|chr3:31684002-31684002|T/C|missense_variant	OSBPL10|p.E453G|1|0.18|ENSG00000144645|chr3:31684002-31684002|T/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.2381896972656	2	466.236927	930.459301	-1.071	-0.00049935	1.1042	0.0005148	0.033139	1.5451E-05	466.23740207591294	43.973	3.6033	40.966	40.22	43.824	-3.0074					174	69	4	0	0	0	0.59148	1	2206	2206		65.803	10.299	1	2152800			57627	15467	47536	47578	63100	63100	179				-0.008710320140835393
TPELEADTF	9	Unmodified	_TPELEADTF_					0	0	0		tr|A0A553SSV3|A0A553SSV3_NIACIGlycosylhydrolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_03865PE=3SV=1	tr|A0A553SSV3|A0A553SSV3_NIACIGlycosylhydrolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_03865PE=3SV=1	tr|A0A553SSV3|A0A553SSV3_NIACIGlycosylhydrolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_03865PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.2943725585938	2	511.73748	1021.46041	-0.79859	-0.00040867	1.397	0.00071489	0.59839	0.00030622	511.737988658671	26.568	0.24974	26.568	26.442	26.692	0					7	4	2	0	0	0	0.027462	1	709	709		23.042	0	1	70863			57628	34423	47537	47579	63101	63101					-0.04946539164177466
TPELLWVT	8	Unmodified	_TPELLWVT_					0	0	0			REV__ENSG00000212899|ENST00000391586|KRTAP3-3	REV__ENSG00000212899|ENST00000391586|KRTAP3-3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.289794921875	2	479.765843	957.517133	-1.0022	-0.00048083	-2.6104	-0.0012524	-3.6126	-0.0017332	479.76405160911366	43.475	0.96959	40.467	40.168	41.137	-3.0074					27	18	3	0	0	0	0.028476	1	2097	2097		52.299	0	1	66198	+		57629	23250	47538	47580	63102	63102					0.03667553183004202
TPELVEGFIK	10	Unmodified	_TPELVEGFIK_					0	0	0		tr|A0A553SIB9|A0A553SIB9_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_14555PE=3SV=1;tr|A0A553SI09|A0A553SI09_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_13935PE=3SV=1	tr|A0A553SIB9|A0A553SIB9_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_14555PE=3SV=1	tr|A0A553SIB9|A0A553SIB9_NIACI6-phospho-beta-glucosidaseOS=NialliacirculansOX=1397GN=CEQ21_14555PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	566.8157958984375	2	566.816064	1131.61758	-0.034625	-1.9626E-05	-0.39831	-0.00022577	-0.43294	-0.0002454	566.8158254764281	108.92	2.4235	108.69	108.32	110.75	-0.22498					109	48	5	0	0	0	0.58067	1	10228	10228		44.377	3.599	1	1117900			57630	33364	47539	47581	63103	63103					0.057031654459933634
TPFGGRLLVL	10	Unmodified	_TPFGGRLLVL_					0	0	0		nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENSG00000059122|ENST00000253928|FLYWCH1;nc|ENSG00000059122|Q4VC44-3|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	MULTI-MSMS	OvCa9_classI_Rep2	2	536.8291015625	2	536.829309	1071.64407	-0.67581	-0.0003628	0.64646	0.00034704	-0.029353	-1.5758E-05	536.8295123243896	123.43	1.7257	123.2	122.7	124.42	-0.23193					89	34	4	0	0	0	0.13777	5	11983	11983;11989;11995;12001;12007		104.06	29.54	1	336830			57631	1251	47540	47582	63104;63105;63106;63107;63108	63104					0.11110899127993434
TPFGGRLLVL	10	Unmodified	_TPFGGRLLVL_					0	0	0		nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENSG00000059122|ENST00000253928|FLYWCH1;nc|ENSG00000059122|Q4VC44-3|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	MULTI-MSMS	OvCa9_classI_Rep3	3	536.8284912109375	2	536.829309	1071.64407	2.6165	0.0014046	-2.588	-0.0013893	0.028493	1.5296E-05	536.8277272009648	124.55	1.6701	123.5	122.96	124.63	-1.0519					82	30	4	0	0	0	0.22663	5	9674	9662;9668;9674;9680;9698		90.37	42.712	1	328410			57632	1251	47540	47582	63109;63110;63111;63112;63113	63111					0.11110899127993434
TPFGGRLLVL	10	Unmodified	_TPFGGRLLVL_					0	0	0		nc|ENSG00000059122|Q4VC44-2|FLYWCH1;ENSG00000059122|ENST00000253928|FLYWCH1;nc|ENSG00000059122|Q4VC44-3|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	nc|ENSG00000059122|Q4VC44-2|FLYWCH1	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.8295288085938	2	536.829309	1071.64407	-2.2741	-0.0012208	2.2388	0.0012019	-0.03535	-1.8977E-05	536.830328046513	124.92	2.2203	123.53	122.97	125.19	-1.3908					87	42	4	0	0	0	0.054313	4	11875	11840;11851;11863;11875		127.46	28.087	1	342970			57633	1251	47540	47582	63114;63115;63116;63117	63117					0.11110899127993434
TPFHTWQL	8	Unmodified	_TPFHTWQL_					0	0	0		tr|A0A553SI06|A0A553SI06_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_13910PE=4SV=1	tr|A0A553SI06|A0A553SI06_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_13910PE=4SV=1	tr|A0A553SI06|A0A553SI06_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_13910PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.2615966796875	2	515.261259	1028.50797	-0.15438	-7.9544E-05	-0.6582	-0.00033915	-0.81258	-0.00041869	515.260842262075	47.42	1.6769	44.313	43.825	45.502	-3.1077					78	32	4	0	0	0	0.57734	1	2567	2567		68.787	6.6794	1	1145700			57634	33333	47541	47583	63118	63118					-0.005147953826735829
TPFLVLKAR	9	Unmodified	_TPFLVLKAR_					0	0	0		ENSG00000010219|ENST00000543431|DYRK4;nc|ENSG00000010219|Q9NR20-3|DYRK4;nc|ENSG00000010219|Q9NR20-4|DYRK4;ENST00000539490.1_1_12:4677127-4682044:+|nuORF;ENST00000539309.5_1_12:4677127-4699979:+|nuORF	ENSG00000010219|ENST00000543431|DYRK4	ENSG00000010219|ENST00000543431|DYRK4	MULTI-SECPEP	OvCa9_classI_Rep3	3	522.8069458007812	2	522.831852	1043.64915	-0.86235	-0.00045086	0.34444	0.00018008	-0.51791	-0.00027078	522.8318919454339	94.213	1.0111	92.318	92.052	93.063	-1.8956					33	19	2	0	0	0	0.027462	1	6068	6068		23.042	6.3251	1	26351			57635	939	47542	47584	63119	63119					0.1290720299059558
TPFRKHIKV	9	Unmodified	_TPFRKHIKV_					0	0	0			REV__ENSG00000112796|ENST00000371383|ENPP5	REV__ENSG00000112796|ENST00000371383|ENPP5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.2861328125	2	563.3482	1124.68185	0.71218	0.00040121	-2.402	-0.0013532	-1.6898	-0.00095197	563.3465541727668	40.377	0.88828	37.423	37.213	38.101	-2.9541					29	16	3	0	0	0	0.027462	1	1803	1803		7.1934	0	1	46407	+		57636	18119	47543	47585	63120	63120					0.12449410113435988
TPFSRLIAQ	9	Unmodified	_TPFSRLIAQ_					0	0	0		ENSG00000120210|ENST00000381641|INSL6	ENSG00000120210|ENST00000381641|INSL6	ENSG00000120210|ENST00000381641|INSL6	MULTI-SECPEP	OvCa9_classI_Rep3	3	516.2725219726562	2	516.795466	1031.57638	0.55104	0.00028478	-1.9028	-0.00098336	-1.3518	-0.00069859	517.2946177931526	79.102	0.68592	76.762	76.367	77.053	-2.3399					25	13	3	0	0	0	0.027462	1	4279	4279		21.96	0	1	14335			57637	3419	47544	47586	63121	63121					0.061854491971644165
TPFTCPRPP	9	Unmodified	_TPFTCPRPP_					0	0	0		ENST00000544944.6_1_19:45542853-45543099:+|nuORF	ENST00000544944.6_1_19:45542853-45543099:+|nuORF	ENST00000544944.6_1_19:45542853-45543099:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.80194091796875	2	508.25512	1014.49569	1.0486	0.00053293	2.146	0.0010907	3.1946	0.0016237	508.2562023925863	85.984	0.55186	83.337	83.091	83.643	-2.6463					14	10	2	0	0	0	0.027462	1	7233	7233		6.3127	0	1	26326			57638	13514	47545	47587	63122	63122					-0.0109815511736997
TPGANKVLFV	10	Unmodified	_TPGANKVLFV_					0	0	0		ENST00000468138.5_1_6:27219498-27223091:+|nuORF;ENSG00000112812|ENST00000230582|PRSS16;ENST00000485603.1_1_6:27222413-27223091:+|nuORF	ENST00000468138.5_1_6:27219498-27223091:+|nuORF	ENST00000468138.5_1_6:27219498-27223091:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	523.302978515625	2	523.305667	1044.59678	-2.1227	-0.0011108	-1.8084	-0.00094634	-3.9311	-0.0020572	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.70152	1	11585	11585		30.318	4.7437	1	183010			57639	2929	47546	47588	63123	63123					0.0762661985700106
TPGGTRQSL	9	Unmodified	_TPGGTRQSL_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.P9131Lfs*70|1|0.1|ENSG00000181143|chr19:8949378-8949379|-/CATCCTTCCACAA|frameshift_variant;MUC16|p.F9515*|1|0.24|ENSG00000181143|chr19:8948225-8948226|AA/-|frameshift_variant;MUC16|p.T9803Vfs*24|1|0.05|ENSG00000181143|chr19:8947363-8947364|-/GGAC|frameshift_variant;MUC16|p.D9802Vfs*25|1|0.05|ENSG00000181143|chr19:8947365-8947366|-/ATCAACAACACCCAACTGGGTAGAAA|frameshift_variant;MUC16|p.E8637Kfs*10|1|0.09|ENSG00000181143|chr19:8950858-8950861|TCTC/-|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	OvCa9_classI_Rep2	2	458.7458801269531	2	458.745973	915.477394	1.2828	0.00058847	-1.2054	-0.00055299	0.077346	3.5482E-05	458.7452325907729	42.803	1.385	40.093	39.818	41.203	-2.7097					61	27	4	0	0	0	0.060996	4	2331	2331;2338;2344;2351		112.41	30.17	1	212930			57640	7920	47547	47589	63124;63125;63126;63127	63124					0.016274262322895083
TPGGTRQSL	9	Unmodified	_TPGGTRQSL_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.P9131Lfs*70|1|0.1|ENSG00000181143|chr19:8949378-8949379|-/CATCCTTCCACAA|frameshift_variant;MUC16|p.F9515*|1|0.24|ENSG00000181143|chr19:8948225-8948226|AA/-|frameshift_variant;MUC16|p.T9803Vfs*24|1|0.05|ENSG00000181143|chr19:8947363-8947364|-/GGAC|frameshift_variant;MUC16|p.D9802Vfs*25|1|0.05|ENSG00000181143|chr19:8947365-8947366|-/ATCAACAACACCCAACTGGGTAGAAA|frameshift_variant;MUC16|p.E8637Kfs*10|1|0.09|ENSG00000181143|chr19:8950858-8950861|TCTC/-|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.7461242675781	2	458.745973	915.477394	-1.1619	-0.00053304	1.044	0.00047894	-0.11793	-5.4101E-05	458.746248756085	42.834	1.7507	39.827	39.539	41.289	-3.0074					90	33	4	0	0	0	0.075618	3	2024	2013;2024;2038		104.01	33.88	1	608420			57641	7920	47547	47589	63128;63129;63130	63129					0.016274262322895083
TPGLEIGIL	9	Unmodified	_TPGLEIGIL_					0	0	0		nc|ENSG00000105971|P51636-3|CAV2	nc|ENSG00000105971|P51636-3|CAV2	nc|ENSG00000105971|P51636-3|CAV2	MULTI-MSMS	OvCa9_classI_Rep2	2	456.7721252441406	2	456.773668	911.532783	-0.55209	-0.00025218	-2.5379	-0.0011592	-3.09	-0.0014114	456.77237766888294	142.31	1.8774	142.08	141.37	143.25	-0.22697					97	37	4	0	0	0	0.58665	1	14252	14252		33.516	1.5607	1	225920			57642	14942	47548	47590	63131	63131					0.07347839700048553
TPGNRAISL	9	Unmodified	_TPGNRAISL_					0	0	0		MUC16-RNASEH2B|1|fusion;MUC16-RNASEH2B|2|fusion;MUC16|p.V2415Qfs*47|1|0.47|ENSG00000181143|chr19:8973882-8973897|TGTAGATGTGGGAACC/-|frameshift_variant;ENSG00000181143|ENST00000397910|MUC16;MUC16|p.P9131Lfs*70|1|0.1|ENSG00000181143|chr19:8949378-8949379|-/CATCCTTCCACAA|frameshift_variant;MUC16|p.F9515*|1|0.24|ENSG00000181143|chr19:8948225-8948226|AA/-|frameshift_variant;MUC16|p.T9803Vfs*24|1|0.05|ENSG00000181143|chr19:8947363-8947364|-/GGAC|frameshift_variant;MUC16|p.D9802Vfs*25|1|0.05|ENSG00000181143|chr19:8947365-8947366|-/ATCAACAACACCCAACTGGGTAGAAA|frameshift_variant;MUC16|p.E8637Kfs*10|1|0.09|ENSG00000181143|chr19:8950858-8950861|TCTC/-|frameshift_variant	MUC16-RNASEH2B|1|fusion;ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	OvCa9_classI_Rep4_	4	464.76593017578125	2	464.764166	927.513779	1.16	0.00053911	-2.4424	-0.0011351	-1.2824	-0.00059603	464.76296776618074	67.603	1.0765	64.113	63.938	65.014	-3.4902					54	21	4	0	0	0	0.24899	3	4995	4970;4981;4995		68.846	19.046	1	1266100			57643	7920;14844	47549	47591	63132;63133;63134	63134					0.047123031289856954
TPGNRAISL	9	Unmodified	_TPGNRAISL_					0	0	0		MUC16-RNASEH2B|1|fusion;MUC16-RNASEH2B|2|fusion;MUC16|p.V2415Qfs*47|1|0.47|ENSG00000181143|chr19:8973882-8973897|TGTAGATGTGGGAACC/-|frameshift_variant;ENSG00000181143|ENST00000397910|MUC16;MUC16|p.P9131Lfs*70|1|0.1|ENSG00000181143|chr19:8949378-8949379|-/CATCCTTCCACAA|frameshift_variant;MUC16|p.F9515*|1|0.24|ENSG00000181143|chr19:8948225-8948226|AA/-|frameshift_variant;MUC16|p.T9803Vfs*24|1|0.05|ENSG00000181143|chr19:8947363-8947364|-/GGAC|frameshift_variant;MUC16|p.D9802Vfs*25|1|0.05|ENSG00000181143|chr19:8947365-8947366|-/ATCAACAACACCCAACTGGGTAGAAA|frameshift_variant;MUC16|p.E8637Kfs*10|1|0.09|ENSG00000181143|chr19:8950858-8950861|TCTC/-|frameshift_variant	MUC16-RNASEH2B|1|fusion;ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	464.764166	927.513779	-0.11336	-5.2684E-05	-0.30597	-0.00014221	-0.41933	-0.00019489	464.7639016708347	66.87	1.1907	64.209	63.751	64.941	-2.661	0.048331	0.0005628	NaN	68.846	57	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	303690			57644	7920;14844	47549	47591							0.047123031289856954
TPGPAGSRL	9	Unmodified	_TPGPAGSRL_					0	0	0		ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	MULTI-MSMS	OvCa9_classI_Rep4_	4	428.2379150390625	2	428.237784	854.461016	0.25685	0.00010999	-0.33794	-0.00014472	-0.081085	-3.4723E-05	428.2375598045028	51.721	1.5146	48.548	48.022	49.537	-3.1734					51	29	2	0	0	0	0.34132	3	3045	3045;3056;3070		58.23	12.278	1	853060			57645	7186	47550	47592	63135;63136;63137	63135					0.027963450661786737
TPGPAGSRL	9	Unmodified	_TPGPAGSRL_					0	0	0		ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	428.237784	854.461016	-0.23965	-0.00010263	0.39882	0.00017079	0.15917	6.8161E-05	428.23782886634393	48.467	0.82381	48.467	48.116	48.94	0	-0.09655	2.4952E-05	NaN	58.23	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236070			57646	7186	47550	47592							0.027963450661786737
TPGPAGSRL	9	Unmodified	_TPGPAGSRL_					0	0	0		ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	ENSG00000171222|ENST00000305978|SCAND1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	428.237784	854.461016	-1.5033	-0.00064377	1.5326	0.00065632	0.029306	1.255E-05	428.2383075962409	51.488	1.0909	48.675	48.353	49.444	-2.8129	0.11211	0.00099601	NaN	58.23	39	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165710			57647	7186	47550	47592							0.027963450661786737
TPGRLGPF	8	Unmodified	_TPGRLGPF_					0	0	0			REV__nc|nan|Q9H425-3|C1orf198	REV__nc|nan|Q9H425-3|C1orf198	MULTI-MSMS	OvCa99_classI_Rep5	1	422.73907470703125	2	422.73742	843.460287	2.5012	0.0010573	-0.052704	-2.228E-05	2.4485	0.0010351	422.7372841652777	86.894	1.955	86.894	86.553	88.508	0					111	46	4	0	0	0	0.74361	1	9161	9161		29.842	0	1	13090000	+		57648	18432	47551	47593	63138	63138					0.03229550417131577
TPGSAAAAPTQ	11	Unmodified	_TPGSAAAAPTQ_					0	0	0			REV__PHC2|p.T485Yfs*27|1|0.15|ENSG00000134686|chr1:33354503-33354504|-/A|frameshift_variant	REV__PHC2|p.T485Yfs*27|1|0.15|ENSG00000134686|chr1:33354503-33354504|-/A|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.8132629394531	2	486.243264	970.471974	-0.57728	-0.0002807	0.66938	0.00032548	0.092095	4.4781E-05	486.243584137275	57.057	0.8922	54.265	54.03	54.922	-2.792					30	17	3	0	0	0	0.025332	1	4065	4065		49.536	21.455	1	34457	+		57649	19220	47552	47594	63139	63139					-0.014442973502127643
TPGSPEPVIL	10	Unmodified	_TPGSPEPVIL_					0	0	0		nc|ENSG00000163001|Q96G28-2|CFAP36	nc|ENSG00000163001|Q96G28-2|CFAP36	nc|ENSG00000163001|Q96G28-2|CFAP36	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.3253479003906	2	505.281857	1008.54916	-0.19173	-9.6879E-05	-1.4225	-0.00071876	-1.6142	-0.00081564	505.2807846805006	60.391	0.5723	60.391	60.116	60.688	0					22	13	3	0	0	0	0.027174	1	5249	5249		14.865	0	1	275180			57650	15136	47553	47595	63140	63140					0.0452292086615671
TPHLPPHRG	9	Unmodified	_TPHLPPHRG_					0	0	0		ENSG00000177839|ENST00000316105|PCDHB9	ENSG00000177839|ENST00000316105|PCDHB9	ENSG00000177839|ENST00000316105|PCDHB9	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.82159423828125	2	506.277775	1010.541	-0.75755	-0.00038353	-2.3283	-0.0011787	-3.0858	-0.0015623	506.7773381132924	69.477	0.30073	66.857	66.765	67.066	-2.6203					7	5	2	0	0	0	0.027462	1	5530	5530		38.806	8.3025	1	35159			57651	7714	47554	47596	63141	63141					0.03614831460049572
TPHQTFVRL	9	Unmodified	_TPHQTFVRL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;nc|ENSG00000118705|P04844-2|RPN2	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.8074951171875	2	549.806365	1097.59818	-0.68959	-0.00037914	1.1753	0.00064621	0.48574	0.00026707	550.3086698753582	69.233	1.3671	65.752	65.371	66.738	-3.4812					70	27	4	0	0	0	0.53483	1	5182	5182		39.253	2.0937	1	355000			57652	3322	47555	47597	63142	63142					0.053282539457541134
TPIEWCNQ	8	Unmodified	_TPIEWCNQ_					0	0	0			REV__nc|ENSG00000001631|O00522-3|KRIT1	REV__nc|ENSG00000001631|O00522-3|KRIT1	MULTI-SECPEP	OvCa9_classI_Rep2	2	495.79010009765625	2	495.72111	989.427666	-0.4142	-0.00020533	3.6813	0.0018249	3.2671	0.0016195	495.72276070081983	75.871	1.3002	74.017	73.323	74.624	-1.854					48	24	3	0	0	0	0.028476	1	6185	6185		16.473	0	1	130490	+		57653	16364	47556	47598	63143	63143					-0.0674702476803759
TPIHNHYK	8	Unmodified	_TPIHNHYK_					0	0	0		L1PA8A_dup160|chr1:247133953-247136664:+|1.5135014545884105|0.4971293307696565|1.61|429.0|90|3|sense	L1PA8A_dup160|chr1:247133953-247136664:+|1.5135014545884105|0.4971293307696565|1.61|429.0|90|3|sense	L1PA8A_dup160|chr1:247133953-247136664:+|1.5135014545884105|0.4971293307696565|1.61|429.0|90|3|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.82159423828125	2	505.264333	1008.51411	-0.65738	-0.00033215	3.0663	0.0015493	2.4089	0.0012171	505.265803001614	69.71	1.7571	67.139	66.565	68.322	-2.5707					56	34	2	0	0	0	0.028476	1	5530	5530		50.025	19.521	1	62005			57654	14771	47557	47599	63144	63144					0.01019722848843685
TPILNKDN	8	Unmodified	_TPILNKDN_					0	0	0			REV__ENSG00000172461|ENST00000302103|FUT9	REV__ENSG00000172461|ENST00000302103|FUT9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.78582763671875	2	457.750724	913.486896	-0.062212	-2.8478E-05	1.4992	0.00068625	1.437	0.00065777	457.75066026025786	47.267	1.0127	44.195	43.759	44.771	-3.0724					23	19	2	0	0	0	0.028476	1	2590	2590		19.997	9.1312	1	39075	+		57655	21701	47558	47600	63145	63145					0.026691945178072274
TPILVVISD	9	Unmodified	_TPILVVISD_					0	0	0		tr|A0A7D6ZWF9|A0A7D6ZWF9_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07780PE=4SV=1	tr|A0A7D6ZWF9|A0A7D6ZWF9_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07780PE=4SV=1	tr|A0A7D6ZWF9|A0A7D6ZWF9_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07780PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	478.7859191894531	2	478.786776	955.558998	-3.0173	-0.0014446	0.10012	4.7936E-05	-2.9172	-0.0013967	478.78669233564773	146.16	1.5937	145.21	144.8	146.39	-0.95947					82	31	4	0	0	0	0.61208	1	12302	12302		30.504	2.6214	1	384210			57656	35841	47559	47601	63146	63146					0.0794410887151571
TPIRIATKPI	10	Unmodified	_TPIRIATKPI_					0	0	0			REV__ENSG00000180071|ENST00000399703|ANKRD18A	REV__ENSG00000180071|ENST00000399703|ANKRD18A	MULTI-MSMS	OvCa9_classI_Rep3	3	555.3536376953125	2	555.355691	1108.69683	-7.0233	-0.0039004	3.381	0.0018777	-3.6422	-0.0020227	555.3574443782504	158.85	1.8694	157.58	157.26	159.13	-1.267					85	36	5	0	0	0	0.79213	1	13758	13758		19.997	0	1	417810	+		57657	22156	47560	47602	63147	63147					0.14682857190791765
TPIRLPLVP	9	Unmodified	_TPIRLPLVP_					0	0	0		ENST00000547077.1_1_10:102989368-102992212:+|nuORF	ENST00000547077.1_1_10:102989368-102992212:+|nuORF	ENST00000547077.1_1_10:102989368-102992212:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	503.3258361816406	2	503.326402	1004.63825	0.14036	7.0648E-05	-0.73987	-0.0003724	-0.59951	-0.00030175	503.32594865659956	112.82	1.9244	112.7	112.28	114.2	-0.12174					111	38	5	0	0	0	0.34496	1	10701	10701		57.811	3.035	1	946430			57658	13543	47561	47603	63148	63148					0.13611800616331493
TPIWESGPL	9	Unmodified	_TPIWESGPL_					0	0	0		ENST00000526001.1_1_1:110458315-110465049:+|nuORF	ENST00000526001.1_1_1:110458315-110465049:+|nuORF	ENST00000526001.1_1_1:110458315-110465049:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	500.2610168457031	2	500.260925	998.507297	1.3743	0.00068751	0.40391	0.00020206	1.7782	0.00088957	500.2609959121263	147.53	1.7605	147.53	147.21	148.97	0					83	35	4	0	0	0	0.34496	1	17320	17320		57.811	2.3071	1	1454700			57659	13206	47562	47604	63149	63149					0.007983651776157785
TPKAQHARLTV	11	Unmodified	_TPKAQHARLTV_					0	0	0			REV__ENST00000479747.1_1_9:130678362-130679146:-|nuORF	REV__ENST00000479747.1_1_9:130678362-130679146:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	611.3526611328125	2	611.356754	1220.69895	-3.7398	-0.0022864	2.6738	0.0016346	-1.0661	-0.00065175	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.72491	1	15413	15413		16.717	0.71061	1	331570	+		57660	26441	47563	47605	63150	63150					0.09743285928584555
TPKEKAQAL	9	Unmodified	_TPKEKAQAL_					0	0	0		nc|ENSG00000148773|P46013-2|MKI67;ENSG00000148773|ENST00000368654|MKI67;MKI67|p.K2670Nfs*23|1|0.03|ENSG00000148773|chr10:128103824-128103836|CTTTTCCTTAGGT/-|frameshift_variant;MKI67|p.R2903Efs*7|1|0.07|ENSG00000148773|chr10:128103134-128103135|-/T|frameshift_variant;MKI67|p.D2897Gfs*53|1|0.03|ENSG00000148773|chr10:128103129-128103150|TGTCTCCTGCTGCCAATTACAT/-|frameshift_variant;MKI67|p.G1790Rfs*43|1|0.03|ENSG00000148773|chr10:128106473-128106474|-/TTTCCCTG|frameshift_variant	nc|ENSG00000148773|P46013-2|MKI67	nc|ENSG00000148773|P46013-2|MKI67	MULTI-MSMS	OvCa9_classI_Rep2	2	493.287841796875	2	493.287474	984.560395	-2.1082	-0.0010399	2.309	0.001139	0.20086	9.9083E-05	493.28819732144296	36.134	1.2341	33.425	33.251	34.485	-2.7097					50	24	3	0	0	0	0.53483	1	1524	1524		39.253	4.1008	1	188470			57661	5423	47564	47606	63151	63151					0.06749742960278127
TPKFEELYQL	10	Unmodified	_TPKFEELYQL_					0	0	0		ENSG00000250423|ENST00000691062|KIAA1210;nc|ENSG00000250423|Q9ULL0|KIAA1210	ENSG00000250423|ENST00000691062|KIAA1210	ENSG00000250423|ENST00000691062|KIAA1210	MULTI-MSMS	OvCa99_classI_Rep5	1	634.3192749023438	2	634.332079	1266.6496	2.6065	0.0016534	1.1057	0.0007014	3.7122	0.0023548	634.3327108660794	99.657	1.0041	99.657	99.318	100.32	0					62	23	4	0	0	0	0.35808	1	11032	11032		80.455	10.827	1	6488800			57662	9419	47565	47607	63152	63152					0.02694533129147203
TPKGHSVFMDI	11	Unmodified	_TPKGHSVFMDI_					0	0	0		ENSG00000173064|ENST00000682272|HECTD4;nc|ENSG00000173064|Q9Y4D8-4|HECTD4;nc|ENSG00000173064|Q9Y4D8|HECTD4;HECTD4|p.P3258Rfs*65|1|0.06|ENSG00000173064|chr12:112184791-112184792|-/C|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-2|HECTD4;HECTD4|p.R2204Ffs*29|1|0.3|ENSG00000173064|chr12:112219449-112219450|-/TGTTATGAAACTGACTGTATCTCTAAACTTAAAA|frameshift_variant;nc|ENSG00000173064|Q9Y4D8-5|HECTD4;nc|ENSG00000173064|Q9Y4D8-3|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	ENSG00000173064|ENST00000682272|HECTD4	MULTI-SECPEP	OvCa99_classI_Rep5	1	411.5229797363281	3	411.209508	1230.60669	3.1094	0.0012786	-2.8436	-0.0011693	0.26579	0.00010929	411.20806503321154	76.749	0.44381	76.749	76.558	77.002	0					12	10	2	0	0	0	0.025861	1	7740	7740		15.921	0	1	164280			57663	7345	47566	47608	63153	63153					0.0006143980008346261
TPKGSLYYYF	10	Unmodified	_TPKGSLYYYF_					0	0	0		tr|A0A553SH15|A0A553SH15_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_11960PE=4SV=1	tr|A0A553SH15|A0A553SH15_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_11960PE=4SV=1	tr|A0A553SH15|A0A553SH15_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_11960PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8057861328125	2	619.808239	1237.60193	-4.0517	-0.0025112	0.51854	0.0003214	-3.5331	-0.0021899	619.8084116302207	153.77	0.65552	152.32	152.01	152.67	-1.4516					47	19	3	0	0	0	0.78463	1	15244	15244		20.947	0.95016	1	39917			57664	33220	47567	47609	63154	63154					-0.007371210710743981
TPKKLGNSL	9	Unmodified	_TPKKLGNSL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	OvCa9_classI_Rep2	2	479.2895202636719	2	479.290017	956.565481	0.48542	0.00023266	-0.92112	-0.00044148	-0.4357	-0.00020882	479.28944941406894	42.946	1.3362	40.237	39.917	41.253	-2.7097					73	26	4	0	0	0	0.13504	4	2343	2333;2343;2355;2375		87.696	30.975	1	745960			57665	4591	47568	47610	63155;63156;63157;63158	63156					0.0854604682289164
TPKKLGNSL	9	Unmodified	_TPKKLGNSL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-5|NUMA1;ENST00000540626.5_1_11:71714575-71718510:-|nuORF	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.29022216796875	2	479.290017	956.565481	-0.94369	-0.0004523	-0.031896	-1.5287E-05	-0.97559	-0.00046759	479.2900175316011	43.202	1.4878	40.195	39.853	41.341	-3.0074					79	28	4	0	0	0	0.094616	4	2071	2048;2059;2071;2084		98.629	13.27	1	3192700			57666	4591	47568	47610	63159;63160;63161;63162	63161					0.0854604682289164
TPKNRKVT	8	Unmodified	_TPKNRKVT_					0	0	0		ENST00000476929.1_1_3:190235673-190238299:+|nuORF	ENST00000476929.1_1_3:190235673-190238299:+|nuORF	ENST00000476929.1_1_3:190235673-190238299:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	472.28717041015625	2	472.287808	942.561064	-4.0924	-0.0019328	4.1769	0.0019727	0.084517	3.9916E-05	472.28971542959135	151.08	2.3118	150.13	149.45	151.76	-0.95645					105	45	4	0	0	0	0.73494	1	12852	12852		34.173	2.2177	1	815680			57667	12471	47569	47611	63163	63163					0.08748582399982752
TPKQRITAS	9	Unmodified	_TPKQRITAS_					0	0	0		ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2899169921875	2	501.290548	1000.56654	-1.4695	-0.00073667	1.3149	0.00065914	-0.15466	-7.7529E-05	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.59259	1	11087	11087		32.812	3.6629	1	97838			57668	4619	47570	47612	63164	63164					0.06628261191781348
TPKQRITAS	9	Unmodified	_TPKQRITAS_					0	0	0		ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.28961181640625	2	501.290548	1000.56654	1.9923	0.0009987	-2.262	-0.0011339	-0.26972	-0.00013521	501.28921225940996	136.36	2.694	134.82	133.46	136.15	-1.5437					126	54	3	0	0	0	0.65371	1	13315	13315		25.574	2.5316	1	86011			57669	4619	47570	47612	63165	63165					0.06628261191781348
TPKQTGLPGP	10	Unmodified	_TPKQTGLPGP_					0	0	0			REV__nc|ENSG00000084676|Q15788-3|NCOA1	REV__nc|ENSG00000084676|Q15788-3|NCOA1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.7549743652344	2	498.279649	994.544745	-0.12092	-6.025E-05	-1.8173	-0.00090555	-1.9383	-0.0009658	498.27851680628567	57.263	1.1205	53.918	53.577	54.698	-3.3449					44	21	3	0	0	0	0.026931	1	3748	3748		37.812	0	1	125680	+		57670	17125	47571	47613	63166	63166					0.047254564432250845
TPKQTGLPGP	10	Unmodified	_TPKQTGLPGP_					0	0	0			REV__nc|ENSG00000084676|Q15788-3|NCOA1	REV__nc|ENSG00000084676|Q15788-3|NCOA1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	498.279649	994.544745	-0.91411	-0.00045548	-0.027924	-1.3914E-05	-0.94203	-0.0004694	498.27967485722235	56.642	0.8923	53.838	53.473	54.366	-2.804	-0.040187	0.00076877	NaN	37.812	30	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38663	+		57671	17125	47571	47613							0.047254564432250845
TPKTIIKSAM	10	Unmodified	_TPKTIIKSAM_					0	0	0		ENSG00000181616|ENST00000322653|OR52H1	ENSG00000181616|ENST00000322653|OR52H1	ENSG00000181616|ENST00000322653|OR52H1	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3165893554688	2	545.32046	1088.62637	-2.8527	-0.0015556	-4.0579	-0.0022129	-6.9106	-0.0037685	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.72142	1	11858	11858		28.081	2.5074	1	337600			57672	7938	47572	47614	63167	63167					0.08559815810804139
TPKTRREA	8	Unmodified	_TPKTRREA_					0	0	0		ENSG00000254647|ENST00000381330|INS;ENSG00000129965|ENST00000397270|INS-IGF2	ENSG00000254647|ENST00000381330|INS	ENSG00000254647|ENST00000381330|INS	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.289794921875	2	479.775065	957.535577	-0.99233	-0.00047609	1.7512	0.00084019	0.75889	0.0003641	479.7738103521091	43.379	0.31583	40.372	40.273	40.589	-3.0074					7	5	2	0	0	0	0.028476	1	2097	2097		60.972	0	1	12767			57673	3950	47573	47615	63168	63168					0.05511107877566701
TPKTVRKN	8	Unmodified	_TPKTVRKN_					0	0	0		nc|ENSG00000177324|Q8NDZ0-2|BEND2;ENSG00000177324|ENST00000380033|BEND2	nc|ENSG00000177324|Q8NDZ0-2|BEND2	nc|ENSG00000177324|Q8NDZ0-2|BEND2	MULTI-MSMS	OvCa9_classI_Rep3	3	472.287841796875	2	472.287808	942.561064	-4.0924	-0.0019328	4.1769	0.0019727	0.084517	3.9916E-05	472.28971542959135	151.08	2.3118	150.13	149.45	151.76	-0.95645					105	45	4	0	0	0	0.7594	1	12858	12858		21.96	2.5999	1	815680			57674	7672	47574	47616	63169	63169					0.0874858239999412
TPKVMSVELRG	11	Unmodified	_TPKVMSVELRG_					0	0	0			REV__ENSG00000134690|ENST00000373055|CDCA8	REV__ENSG00000134690|ENST00000373055|CDCA8	MULTI-MSMS	OvCa9_classI_Rep2	2	608.8360595703125	2	608.839548	1215.66454	-3.9036	-0.0023766	-0.38806	-0.00023627	-4.2916	-0.0026129	608.8391511731406	151.54	1.2369	151.31	150.94	152.18	-0.22697					74	24	4	0	0	0	0.71498	1	15406	15406		24.519	0	1	158260	+		57675	19221	47575	47617	63170	63170					0.06533701725470564
TPLASTYVAQ	10	Unmodified	_TPLASTYVAQ_					0	0	0			REV__ENST00000428865.2_1_6:74405214-74405695:-|nuORF	REV__ENST00000428865.2_1_6:74405214-74405695:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.3416137695312	2	525.776939	1049.53933	-1.5523	-0.00081619	1.426	0.00074975	-0.12635	-6.6432E-05	525.7776233240893	86.876	0.96266	84.699	84.33	85.293	-2.1768					42	16	3	0	0	0	0.026494	1	5209	5209		77.318	19.506	1	147840	+		57676	25694	47576	47618	63171	63171					0.016537328607455493
TPLAVQAAPQV	11	Unmodified	_TPLAVQAAPQV_					0	0	0		ENSG00000184271|ENST00000333640|POU6F1	ENSG00000184271|ENST00000333640|POU6F1	ENSG00000184271|ENST00000333640|POU6F1	MULTI-MSMS	OvCa99_classI_Rep5	1	547.8155517578125	2	547.813856	1093.61316	2.0352	0.0011149	0.24283	0.00013302	2.2781	0.001248	547.8138420756068	82.414	0.93069	82.414	82.061	82.992	0					54	21	4	0	0	0	0.25285	1	8536	8536		72.879	6.45	1	6145600			57677	8142	47577	47619	63172	63172					0.07009701023071102
TPLGILPKERK	11	Unmodified	_TPLGILPKERK_					0	0	0			REV__Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|49|2|sense	REV__Harlequin-int_dup159|chr4:69053326-69056858:+|5.903567647163159|0.4897717427831806|3.59|423.0|49|2|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	626.39306640625	2	626.392805	1250.77106	-5.6586	-0.0035445	-3.473	-0.0021755	-9.1316	-0.00572	626.8920656002647	163.54	1.1058	163.31	162.97	164.08	-0.22697					56	36	2	0	0	0	0.69808	1	16655	16655		30.318	2.4355	1	65883	+		57678	28170	47578	47620	63173	63173					0.1557020028228635
TPLGKKRAL	9	Unmodified	_TPLGKKRAL_					0	0	0		nc|ENSG00000132321|Q86XH1-5|IQCA1;ENSG00000132321|ENST00000409907|IQCA1;ENST00000479783.1_1_2:237233333-237240271:-|nuORF	nc|ENSG00000132321|Q86XH1-5|IQCA1	nc|ENSG00000132321|Q86XH1-5|IQCA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.322509765625	2	492.321651	982.62875	0.73599	0.00036234	-1.5982	-0.00078682	-0.86219	-0.00042447	492.3206556152463	38.14	1.339	35.214	34.857	36.196	-2.9264					50	26	3	0	0	0	0.63422	1	1461	1461		27.882	3.6795	1	127470			57679	4126	47579	47621	63174	63174					0.13674032330777663
TPLHFGGI	8	Unmodified	_TPLHFGGI_					0	0	0			REV__ENST00000337198.9_1_8:103855961-103870277:-|nuORF	REV__ENST00000337198.9_1_8:103855961-103870277:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	421.24310302734375	2	421.231971	840.449388	-2.5555	-0.0010765	-2.1915	-0.00092311	-4.747	-0.0019996	421.23102070284455	49.404	0.88116	46.262	45.99	46.871	-3.1416					26	16	2	0	0	0	0.028476	1	2765	2765		15.636	0	1	32547	+		57680	24595	47580	47622	63175	63175					0.022781480428648138
TPLKLKIKP	9	Unmodified	_TPLKLKIKP_					0	0	0		ENST00000566956.1_1_16:28890342-28891133:-|nuORF;ENST00000561547.5_1_16:28890323-28891133:-|nuORF	ENST00000566956.1_1_16:28890342-28891133:-|nuORF	ENST00000566956.1_1_16:28890342-28891133:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.3057861328125	2	519.357702	1036.70085	0.6418	0.00033333	1.2612	0.00065502	1.903	0.00098835	519.3582472082908	154.86	0.95905	154.86	154.57	155.53	0					40	18	3	0	0	0	0.027462	1	18205	18205		32.812	0	1	114940			57681	13757	47581	47623	63176	63176					0.18396946684492832
TPLLVLLISVP	11	Unmodified	_TPLLVLLISVP_					0	0	0		tr|A0A7D6VRM2|A0A7D6VRM2_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_20190PE=4SV=1	tr|A0A7D6VRM2|A0A7D6VRM2_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_20190PE=4SV=1	tr|A0A7D6VRM2|A0A7D6VRM2_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_20190PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.8021240234375	2	582.88375	1163.75295	1.1186	0.00065201	0.84295	0.00049134	1.9615	0.0011434	582.8847361597119	147.5	0.38901	147.5	147.26	147.65	0					11	7	2	0	0	0	0.025496	1	17274	17274		40.778	20.781	1	14794			57682	34943	47582	47624	63177	63177					0.17762065307601915
TPLRIRSGG	9	Unmodified	_TPLRIRSGG_					0	0	0			REV__ENST00000345125.7_1_8:11710176-11718921:-|nuORF	REV__ENST00000345125.7_1_8:11710176-11718921:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	478.7850341796875	2	478.785433	955.556313	-2.4635	-0.0011795	2.3243	0.0011128	-0.13927	-6.6679E-05	478.7864521794397	145.79	1.5385	145.57	144.98	146.52	-0.22696					81	30	4	0	0	0	0.61208	1	14690	14690		30.504	2.2494	1	230950	+		57683	24690	47583	47625	63178	63178					0.07675698257241947
TPLRPCASS	9	Unmodified	_TPLRPCASS_					0	0	0		chr16:2772102-2772392|113|136.22|0.43|8.29|-|0|ELOB,None|2;ENST00000494946.6_1_16:2822040-2825556:-|nuORF	chr16:2772102-2772392|113|136.22|0.43|8.29|-|0|ELOB,None|2	chr16:2772102-2772392|113|136.22|0.43|8.29|-|0|ELOB,None|2	MULTI-MSMS	OvCa9_classI_Rep2	2	466.2369079589844	2	466.236927	930.459301	0.31116	0.00014507	-0.31655	-0.00014759	-0.0053896	-2.5128E-06	466.23662450729495	43.901	2.5422	41.191	40.658	43.2	-2.7097					104	50	4	0	0	0	0.56889	1	2435	2435		35.618	5.1146	1	381230			57684	372	47584	47626	63179	63179					-0.008710320140835393
TPLSQSMSVLP	11	Unmodified	_TPLSQSMSVLP_					0	0	0		ENSG00000156675|ENST00000330843|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-2|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1	ENSG00000156675|ENST00000330843|RAB11FIP1	ENSG00000156675|ENST00000330843|RAB11FIP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	580.3040161132812	2	580.305007	1158.59546	-0.19119	-0.00011095	-2.3934	-0.0013889	-2.5846	-0.0014999	580.3035027538522	113.35	1.1788	111.9	111.61	112.78	-1.4461					38	23	3	0	0	0	0.4646	1	10505	10505		56.434	3.3448	1	110240			57685	5853	47585	47627	63180	63180					0.022506177059312904
TPLSQSMSVLP	11	Unmodified	_TPLSQSMSVLP_					0	0	0		ENSG00000156675|ENST00000330843|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-2|RAB11FIP1;nc|ENSG00000156675|Q6WKZ4-3|RAB11FIP1	ENSG00000156675|ENST00000330843|RAB11FIP1	ENSG00000156675|ENST00000330843|RAB11FIP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	580.305007	1158.59546	0.12618	7.3225E-05	-2.2853	-0.0013262	-2.1591	-0.001253	580.3035616890598	112.06	1.5775	111.93	111.58	113.16	-0.12818	0.016779	3.4607E-05	NaN	56.434	58	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116420			57686	5853	47585	47627							0.022506177059312904
TPLSVLLRP	9	Unmodified	_TPLSVLLRP_					0	0	0			REV__nc|ENSG00000186635|Q96P48-3|ARAP1	REV__nc|ENSG00000186635|Q96P48-3|ARAP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.7549743652344	2	498.316035	994.617516	-0.11783	-5.8715E-05	-0.77879	-0.00038808	-0.89661	-0.0004468	498.31535400174755	57.319	0.91695	53.974	53.476	54.393	-3.3449					24	17	2	0	0	0	0.027462	1	3748	3748		39.253	5.0803	1	19660	+		57687	22603	47586	47628	63181	63181					0.11999210236672297
TPLSVLLRP	9	Unmodified	_TPLSVLLRP_					0	0	0			REV__nc|ENSG00000186635|Q96P48-3|ARAP1	REV__nc|ENSG00000186635|Q96P48-3|ARAP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	498.316035	994.617516	-0.91909	-0.000458	0.71936	0.00035847	-0.19973	-9.9527E-05	498.31601327841923	56.619	0.5941	53.815	53.523	54.117	-2.804	-0.079747	0.00079191	NaN	39.253	13	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9050.7	+		57688	22603	47586	47628							0.11999210236672297
TPLTLQSQPK	10	Unmodified	_TPLTLQSQPK_					0	0	0		ENSG00000137185|ENST00000252207|ZSCAN9;nc|ENSG00000137185|O15535-2|ZSCAN9	ENSG00000137185|ENST00000252207|ZSCAN9	ENSG00000137185|ENST00000252207|ZSCAN9	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.2835083007812	2	556.819138	1111.62372	2.7336	0.0015221	3.7772	0.0021032	6.5108	0.0036253	556.8212094864045	86.275	0.98014	86.275	86.033	87.013	0					31	23	2	0	0	0	0.026665	1	9061	9061		34.173	0	1	2229100			57689	4565	47587	47629	63182	63182					0.07237683677522
TPLTTAVISA	10	Unmodified	_TPLTTAVISA_					0	0	0		nc|ENSG00000170325|Q9NQV6-6|PRDM10;nc|ENSG00000170325|Q9NQV6-2|PRDM10;nc|ENSG00000170325|Q9NQV6-1|PRDM10;nc|ENSG00000170325|Q9NQV6-5|PRDM10;nc|ENSG00000170325|Q9NQV6|PRDM10;ENSG00000170325|ENST00000360871|PRDM10;nc|ENSG00000170325|Q9NQV6-7|PRDM10	nc|ENSG00000170325|Q9NQV6-6|PRDM10	nc|ENSG00000170325|Q9NQV6-6|PRDM10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.31561279296875	2	487.281857	972.549162	0.37082	0.0001807	-0.81816	-0.00039867	-0.44733	-0.00021798	487.281128834211	38.602	0.19788	35.676	35.552	35.75	-2.9264					5	3	2	0	0	0	0.026931	1	1522	1522		30.318	13.613	1	7592.4			57690	15176	47588	47630	63183	63183					0.0617892086613665
TPMGPGRTV	9	Oxidation (M)	_TPM(Oxidation (M))GPGRTV_		TPM(1)GPGRTV		TPM(72)GPGRTV	0	0	1		ENSG00000116977|ENST00000366584|LGALS8;nc|ENSG00000116977|O00214-2|LGALS8;ENST00000489586.6_1_1:236706790-236711458:+|nuORF	ENSG00000116977|ENST00000366584|LGALS8	ENSG00000116977|ENST00000366584|LGALS8	MULTI-MSMS	OvCa9_classI_Rep2	2	466.23663330078125	2	466.236927	930.459301	0.31116	0.00014507	-0.31655	-0.00014759	-0.0053896	-2.5128E-06	466.23662450729495	43.901	2.5422	41.191	40.658	43.2	-2.7097					104	50	4	0	0	0	0.22621	1	2461	2461		71.877	14.066	1	381230			57691	3222	47589	47631	63184	63184		103			-0.008710320140608019
TPMGPGRTV	9	Oxidation (M)	_TPM(Oxidation (M))GPGRTV_		TPM(1)GPGRTV		TPM(60)GPGRTV	0	0	1		ENSG00000116977|ENST00000366584|LGALS8;nc|ENSG00000116977|O00214-2|LGALS8;ENST00000489586.6_1_1:236706790-236711458:+|nuORF	ENSG00000116977|ENST00000366584|LGALS8	ENSG00000116977|ENST00000366584|LGALS8	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.2381286621094	2	466.236927	930.459301	-1.071	-0.00049935	1.1042	0.0005148	0.033139	1.5451E-05	466.23740207591294	43.973	3.6033	40.966	40.22	43.824	-3.0074					174	69	4	0	0	0	0.32653	1	2152	2152		59.931	6.5793	1	2152800			57692	3222	47589	47631	63185	63185		103			-0.008710320140608019
TPMGPGRTV	9	Unmodified	_TPMGPGRTV_					0	0	0		ENSG00000116977|ENST00000366584|LGALS8;nc|ENSG00000116977|O00214-2|LGALS8;ENST00000489586.6_1_1:236706790-236711458:+|nuORF	ENSG00000116977|ENST00000366584|LGALS8	ENSG00000116977|ENST00000366584|LGALS8	MULTI-MSMS	OvCa9_classI_Rep2	2	458.2392578125	2	458.23947	914.464386	-0.48888	-0.00022402	0.34746	0.00015922	-0.14142	-6.4804E-05	458.2395351157387	52.859	1.7336	50.045	49.591	51.325	-2.8139					75	34	3	0	0	0	0.1149	5	3550	3540;3544;3550;3556;3562		93.143	41.808	1	376680			57693	3222	47589	47632	63186;63187;63188;63189;63190	63188					0.003732718485480291
TPMGPGRTV	9	Unmodified	_TPMGPGRTV_					0	0	0		ENSG00000116977|ENST00000366584|LGALS8;nc|ENSG00000116977|O00214-2|LGALS8;ENST00000489586.6_1_1:236706790-236711458:+|nuORF	ENSG00000116977|ENST00000366584|LGALS8	ENSG00000116977|ENST00000366584|LGALS8	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.2405700683594	2	458.23947	914.464386	-0.76935	-0.00035255	0.52142	0.00023894	-0.24793	-0.00011361	458.2396827804553	53.03	2.5891	49.822	49.094	51.684	-3.208					112	50	4	0	0	0	0.033166	6	3212	3202;3212;3224;3236;3248;3262		132.76	61.462	1	2354200			57694	3222	47589	47632	63191;63192;63193;63194;63195;63196	63192					0.003732718485480291
TPMGRAQRA	9	Unmodified	_TPMGRAQRA_					0	0	0		ENST00000601247.5_1_19:17858586-17877404:+|nuORF	ENST00000601247.5_1_19:17858586-17877404:+|nuORF	ENST00000601247.5_1_19:17858586-17877404:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.77313232421875	2	494.261268	986.507982	-0.66976	-0.00033104	-3.8784	-0.0019169	-4.5481	-0.002248	494.25874501165885	44.611	0.35548	44.611	44.35	44.706	0					10	7	2	0	0	0	0.027462	1	3025	3025		34.173	0	1	96001			57695	14224	47590	47633	63197	63197					0.014188813456712523
TPMLRSGNL	9	Unmodified	_TPMLRSGNL_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	OvCa9_classI_Rep2	2	494.76641845703125	2	494.765852	987.51715	0.62217	0.00030783	-1.1334	-0.00056077	-0.51125	-0.00025295	494.7652730686863	70.711	1.7563	68.14	67.613	69.369	-2.5707					88	33	3	0	0	0	0.060996	7	5659	5653;5659;5664;5669;5676;5683;5689		112.41	42.783	1	867250			57696	4140	47591	47634	63198;63199;63200;63201;63202;63203;63204	63199					0.022892299113550507
TPMLRSGNL	9	Unmodified	_TPMLRSGNL_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.766845703125	2	494.765852	987.51715	-0.93477	-0.00046249	0.21508	0.00010641	-0.71969	-0.00035608	494.7659805419133	71.702	1.7534	68.246	67.874	69.628	-3.4563					96	35	4	0	0	0	0.024645	7	5474	5463;5474;5486;5498;5511;5522;5537		141.52	55.447	1	3336600			57697	4140	47591	47634	63205;63206;63207;63208;63209;63210;63211	63206					0.022892299113550507
TPMLRSGNL	9	Oxidation (M)	_TPM(Oxidation (M))LRSGNL_		TPM(1)LRSGNL		TPM(110)LRSGNL	0	0	1		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.7635803222656	2	502.763309	1003.51206	-0.96226	-0.00048379	1.3789	0.00069326	0.41663	0.00020947	502.7643042024895	63.122	1.3059	59.647	58.945	60.251	-3.475					55	18	4	0	0	0	0.066102	2	4424	4412;4424		109.48	32.632	1	3159300			57698	4140	47591	47635	63212;63213	63213		131			0.01044926048734851
TPNGQLKQ	8	Unmodified	_TPNGQLKQ_					0	0	0			REV__XRCC5-VWA3B|1|fusion	REV__XRCC5-VWA3B|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	443.2442321777344	2	443.243067	884.47158	0.38443	0.0001704	-0.083652	-3.7078E-05	0.30078	0.00013332	443.2428742572482	59.113	0.98597	59.113	58.932	59.918	0					55	25	3	0	0	0	0.58851	1	5070	5070		66.429	0	1	2033100	+		57699	21390	47592	47636	63214	63214					0.024723277206135208
TPNSYAEPLA	10	Unmodified	_TPNSYAEPLA_					0	0	0		HOXC10|p.C111Afs*86|1|0.33|ENSG00000180818|chr12:53985590-53985590|T/-|frameshift_variant;ENSG00000180818|ENST00000303460|HOXC10	HOXC10|p.C111Afs*86|1|0.33|ENSG00000180818|chr12:53985590-53985590|T/-|frameshift_variant	HOXC10|p.C111Afs*86|1|0.33|ENSG00000180818|chr12:53985590-53985590|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	531.7567749023438	2	531.758746	1061.50294	0.050783	2.7004E-05	-3.8754	-0.0020608	-3.8246	-0.0020338	531.7566107634789	31.1	0.77737	31.1	30.881	31.658	0					25	15	2	0	0	0	0.44431	1	1253	1253		62.107	9.1707	1	791400			57700	7890	47593	47637	63215	63215					-0.025351440359372646
TPPAQTRAAAA	11	Unmodified	_TPPAQTRAAAA_					0	0	0			REV__ENSG00000113504|ENST00000264930|SLC12A7	REV__ENSG00000113504|ENST00000264930|SLC12A7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.3074951171875	2	527.78563	1053.55671	-1.7384	-0.00091753	0.81507	0.00043018	-0.92338	-0.00048735	527.7858265591414	45.633	0.67832	42.594	42.386	43.064	-3.0385					15	12	2	0	0	0	0.025656	1	2384	2384		40.058	0	1	16923	+		57701	18152	47594	47638	63216	63216					0.03207073186422349
TPPQRRRS	8	Unmodified	_TPPQRRRS_					0	0	0		ENSG00000188766|ENST00000691638|SPRED3	ENSG00000188766|ENST00000691638|SPRED3	ENSG00000188766|ENST00000691638|SPRED3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.7713928222656	2	499.286131	996.55771	-0.23287	-0.00011627	-1.8031	-0.00090028	-2.036	-0.0010166	499.285979756728	38.995	0.69511	36.068	35.75	36.445	-2.9264					29	13	4	0	0	0	0.028476	1	1592	1592		20.482	11.011	1	23515			57702	8499	47595	47639	63217	63217					0.05929332345999683
TPPRRVQTPL	10	Unmodified	_TPPRRVQTPL_					0	0	0		nc|ENSG00000184640|Q9UHD8-7|SEPTIN9;nc|ENSG00000184640|Q9UHD8-2|SEPTIN9;nc|ENSG00000184640|Q9UHD8-5|SEPTIN9;ENSG00000184640|ENST00000427177|SEPTIN9	nc|ENSG00000184640|Q9UHD8-7|SEPTIN9	nc|ENSG00000184640|Q9UHD8-7|SEPTIN9	MULTI-MSMS	OvCa9_classI_Rep4_	4	582.8480834960938	2	582.846022	1163.67749	-1.6377	-0.00095454	1.7048	0.00099364	0.067079	3.9097E-05	582.8469560361419	53.625	1.4328	50.387	49.965	51.397	-3.238					69	27	3	0	0	0	0.75313	1	3281	3281		24.519	2.5593	1	291220			57703	8179	47596	47640	63218	63218					0.10219900899915046
TPPRSKRVL	9	Unmodified	_TPPRSKRVL_					0	0	0		ENSG00000140943|ENST00000343411|MBTPS1	ENSG00000140943|ENST00000343411|MBTPS1	ENSG00000140943|ENST00000343411|MBTPS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2859497070312	2	527.330008	1052.64546	-0.53285	-0.00028099	3.8896	0.0020511	3.3568	0.0017701	527.3323790536214	51.638	0.20764	51.638	51.461	51.669	0					7	4	2	0	0	0	0.027462	1	3976	3976		42.396	19.354	1	164390			57704	4880	47597	47641	63219	63219					0.1212453321677458
TPPTGEPGFPV	11	Unmodified	_TPPTGEPGFPV_					0	0	0		nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX;ENST00000477049.1_1_9:135139628-135141576:-|nuORF	nc|ENSG00000107290|Q7Z333-3|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.2631225585938	2	549.776939	1097.53933	0.69412	0.00038161	2.2838	0.0012556	2.9779	0.0016372	549.7798332358223	151.34	0.40884	151.34	151.09	151.5	0					11	7	2	0	0	0	0.025681	1	17707	17707		26.693	0	1	24051			57705	2599	47598	47642	63220	63220					-0.005542671392504417
TPPVAYAGP	9	Unmodified	_TPPVAYAGP_					0	0	0			REV__nc|ENSG00000148840|Q5VV67-2|PPRC1	REV__nc|ENSG00000148840|Q5VV67-2|PPRC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.7283935546875	2	436.729261	871.443968	-0.57246	-0.00025001	-3.6713	-0.0016033	-4.2437	-0.0018534	436.7275210000677	53.688	1.1757	50.44	50.109	51.285	-3.2474					39	22	2	0	0	0	0.30002	1	3291	3291		62.978	5.1671	1	314740	+		57706	20131	47599	47643	63221	63221					0.00310424460383274
TPQKFNVPR	9	Unmodified	_TPQKFNVPR_					0	0	0			REV__ENST00000224140.5_1_9:135221842-135224754:-|nuORF	REV__ENST00000224140.5_1_9:135221842-135224754:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.79541015625	2	543.806365	1085.59818	-2.6823	-0.0014587	3.8104	0.0020721	1.1281	0.00061344	543.8062217850882	108	0.52366	106.12	105.74	106.26	-1.8785					16	10	2	0	0	0	0.027462	1	9885	9885		29.15	0	1	69717	+		57707	23755	47600	47644	63222	63222					0.05880253945747427
TPQLLVAQRRG	11	Unmodified	_TPQLLVAQRRG_					0	0	0		ENSG00000103326|ENST00000219611|CAPN15	ENSG00000103326|ENST00000219611|CAPN15	ENSG00000103326|ENST00000219611|CAPN15	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.867431640625	2	619.870028	1237.7255	-1.8762	-0.001163	0.9332	0.00057847	-0.94295	-0.00058451	619.8704234308321	147.79	3.8764	146.35	144.25	148.12	-1.4351					189	77	4	0	0	0	0.71191	1	14679	14679		25.574	8.2091	1	269210			57708	2308	47601	47645	63223	63223					0.11614974819894996
TPQSNRPVM	9	Oxidation (M)	_TPQSNRPVM(Oxidation (M))_		TPQSNRPVM(1)		TPQSNRPVM(57)	0	0	1		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A;nc|ENSG00000181222|P24928-2|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	OvCa9_classI_Rep2	2	523.258544921875	2	523.258391	1044.50223	-1.9148	-0.0010019	1.8846	0.00098613	-0.030187	-1.5795E-05	523.2592134086541	35.47	1.833	32.76	32.356	34.189	-2.7097					70	36	3	0	0	0	0.35444	2	1441	1415;1441		56.721	14.142	1	108010			57709	7923	47602	47646	63224;63225	63225		244			-0.018242619566535723
TPQSNRPVM	9	Oxidation (M)	_TPQSNRPVM(Oxidation (M))_		TPQSNRPVM(1)		TPQSNRPVM(46)	0	0	1		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A;nc|ENSG00000181222|P24928-2|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.2595825195312	2	523.258391	1044.50223	-0.58979	-0.00030861	0.60563	0.0003169	0.015839	8.2879E-06	523.258531387231	20.8	3.0068	19.461	18.803	21.81	-1.3386					123	66	2	0	0	0	0.46356	1	83	83		45.972	10.354	1	51368			57710	7923	47602	47646	63226	63226		244			-0.018242619566535723
TPQSNRPVM	9	Unmodified	_TPQSNRPVM_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A;nc|ENSG00000181222|P24928-2|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.261962890625	2	515.260933	1028.50731	-0.15438	-7.9544E-05	-0.025585	-1.3183E-05	-0.17996	-9.2727E-05	515.260842262075	47.42	1.6769	44.313	43.825	45.502	-3.1077					78	32	4	0	0	0	0.074342	1	2554	2554		104.75	5.3716	1	1145700			57711	7923	47602	47647	63227	63227					-0.005799580940447413
TPQSNRPVM	9	Unmodified	_TPQSNRPVM_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A;nc|ENSG00000181222|P24928-2|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.260933	1028.50731	-0.41236	-0.00021247	0.053799	2.7721E-05	-0.35856	-0.00018475	515.2608749182274	47.229	1.4361	44.52	44.142	45.578	-2.7097	0.10355	2.2996E-05	NaN	104.75	56	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	181110			57712	7923	47602	47647							-0.005799580940447413
TPQTDKTF	8	Unmodified	_TPQTDKTF_					0	0	0		tr|A0A553SPL0|A0A553SPL0_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_26595PE=4SV=1	tr|A0A553SPL0|A0A553SPL0_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_26595PE=4SV=1	tr|A0A553SPL0|A0A553SPL0_NIACITranscriptionantiterminatorOS=NialliacirculansOX=1397GN=CEQ21_26595PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	468.3067626953125	2	469.234907	936.455261	0.11761	5.5188E-05	0.58922	0.00027648	0.70683	0.00033167	469.23488040824293	62.2	0.591	62.2	61.869	62.46	0					23	13	3	0	0	0	0.028476	1	5561	5561		30.504	0	1	343360			57713	34057	47603	47648	63228	63228					-0.015507982361327777
TPQWGKTF	8	Unmodified	_TPQWGKTF_					0	0	0		ENST00000587682.5_1_19:44471099-44471177:+|nuORF	ENST00000587682.5_1_19:44471099-44471177:+|nuORF	ENST00000587682.5_1_19:44471099-44471177:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.2306213378906	2	482.747985	963.481417	-0.44773	-0.00021614	-0.23468	-0.00011329	-0.6824	-0.00032943	482.74768270349784	29.263	0.34909	29.263	29.087	29.436	0					11	6	2	0	0	0	0.028476	1	1022	1022		19.997	11.765	1	125480			57714	14067	47604	47649	63229	63229					-0.0017848427399940192
TPRHIIVRF	9	Unmodified	_TPRHIIVRF_					0	0	0		L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|7|1|sense;L1P1_dup3131|chr21:8366255-8369545:+|1.1341358509163533|0.0129397411743262|6.45|422.0|83|3|sense;L1PA3_dup1152|chr2:117623254-117629278:+|1.1606400945596698|0.0841542146032081|3.79|394.0|17|1|sense;L1PA2_dup23|chr1:43114528-43120516:-|1.3533449411662286|0.3152228216366226|2.1|404.0|45|2|sense;L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|14|1|sense;nc|ENSG1000|Q9UN81|L1_ORF1;L1PA3_dup10510|chr20:40619323-40625356:+|1.448906025747238|0.1317034148076854|3.46|417.0|148|3|sense;L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|177|3|sense	L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|7|1|sense	L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|7|1|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	569.8455200195312	2	569.845825	1137.6771	0.70876	0.00040389	-0.79562	-0.00045338	-0.086856	-4.9495E-05	569.8452383624614	66.591	2.2644	63.645	63.265	65.53	-2.9459					89	44	4	0	0	0	0.51865	2	2732	2732;2735		40.778	11.629	1	226750			57715	14535	47605	47650	63230;63231	63230					0.11376525970695184
TPRHIIVRF	9	Unmodified	_TPRHIIVRF_					0	0	0		L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|7|1|sense;L1P1_dup3131|chr21:8366255-8369545:+|1.1341358509163533|0.0129397411743262|6.45|422.0|83|3|sense;L1PA3_dup1152|chr2:117623254-117629278:+|1.1606400945596698|0.0841542146032081|3.79|394.0|17|1|sense;L1PA2_dup23|chr1:43114528-43120516:-|1.3533449411662286|0.3152228216366226|2.1|404.0|45|2|sense;L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|14|1|sense;nc|ENSG1000|Q9UN81|L1_ORF1;L1PA3_dup10510|chr20:40619323-40625356:+|1.448906025747238|0.1317034148076854|3.46|417.0|148|3|sense;L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|177|3|sense	L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|7|1|sense	L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|7|1|sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	569.845825	1137.6771	0.20638	0.00011761	-0.57466	-0.00032747	-0.36828	-0.00020986	569.8453629830672	66.143	1.4386	63.448	63.17	64.609	-2.6958	-0.19535	0.0004308	NaN	40.778	67	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179300			57716	14535	47605	47650							0.11376525970695184
TPRHIIVRF	9	Unmodified	_TPRHIIVRF_					0	0	0		L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|7|1|sense;L1P1_dup3131|chr21:8366255-8369545:+|1.1341358509163533|0.0129397411743262|6.45|422.0|83|3|sense;L1PA3_dup1152|chr2:117623254-117629278:+|1.1606400945596698|0.0841542146032081|3.79|394.0|17|1|sense;L1PA2_dup23|chr1:43114528-43120516:-|1.3533449411662286|0.3152228216366226|2.1|404.0|45|2|sense;L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|14|1|sense;nc|ENSG1000|Q9UN81|L1_ORF1;L1PA3_dup10510|chr20:40619323-40625356:+|1.448906025747238|0.1317034148076854|3.46|417.0|148|3|sense;L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|177|3|sense	L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|7|1|sense	L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|7|1|sense	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	569.845825	1137.6771	1.2514	0.00071309	-1.66	-0.00094593	-0.40859	-0.00023283	569.84472100446	67.327	1.2769	63.837	63.541	64.818	-3.4902	0.19364	-0.00080611	NaN	40.778	59	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	190840			57717	14535	47605	47650							0.11376525970695184
TPRHVEVQ	8	Unmodified	_TPRHVEVQ_					0	0	0		ENST00000495767.5_1_3:182740340-182790239:-|nuORF;MCCC1-RAD51B|3|fusion;MCCC1-RAD51B|1|fusion;MCCC1-RAD51B|2|fusion;ENSG00000078070|ENST00000265594|MCCC1	ENST00000495767.5_1_3:182740340-182790239:-|nuORF	ENST00000495767.5_1_3:182740340-182790239:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	483.26165771484375	2	483.261791	964.509028	3.1961	0.0015446	-3.3749	-0.001631	-0.17876	-8.6389E-05	483.26001752471973	25.718	0.79281	23.009	22.867	23.66	-2.7097					28	18	2	0	0	0	0.75216	1	297	297		25.574	2.5316	1	65601			57718	1584	47606	47651	63232	63232					0.02535418986235527
TPRNPNSAILL	11	Unmodified	_TPRNPNSAILL_					0	0	0		nc|ENSG00000147642|Q9NX95-5|SYBU;nc|ENSG00000147642|Q9NX95-2|SYBU;nc|ENSG00000147642|Q9NX95-4|SYBU;nc|ENSG00000147642|Q9NX95-3|SYBU;ENSG00000147642|ENST00000276646|SYBU	nc|ENSG00000147642|Q9NX95-5|SYBU	nc|ENSG00000147642|Q9NX95-5|SYBU	MULTI-MSMS	OvCa9_classI_Rep2	2	598.3424072265625	2	598.343312	1194.67207	-1.8759	-0.0011224	1.8892	0.0011304	0.013305	7.961E-06	598.3441112823094	84.726	1.8991	83.18	82.588	84.487	-1.5462					99	37	4	0	0	0	0.4397	3	7285	7285;7297;7303		58.246	12.22	1	427910			57719	5367	47607	47652	63233;63234;63235	63233					0.08252177317444875
TPRNPNSAILL	11	Unmodified	_TPRNPNSAILL_					0	0	0		nc|ENSG00000147642|Q9NX95-5|SYBU;nc|ENSG00000147642|Q9NX95-2|SYBU;nc|ENSG00000147642|Q9NX95-4|SYBU;nc|ENSG00000147642|Q9NX95-3|SYBU;ENSG00000147642|ENST00000276646|SYBU	nc|ENSG00000147642|Q9NX95-5|SYBU	nc|ENSG00000147642|Q9NX95-5|SYBU	MULTI-MSMS	OvCa9_classI_Rep4_	4	598.3447875976562	2	598.343312	1194.67207	1.8039	0.0010793	-1.8858	-0.0011284	-0.081949	-4.9034E-05	598.3420292101987	85.912	1.5832	83.266	82.896	84.48	-2.6463					86	31	4	0	0	0	0.36853	2	7248	7238;7248		63.426	3.5562	1	808690			57720	5367	47607	47652	63236;63237	63237					0.08252177317444875
TPRPRPAVV	9	Unmodified	_TPRPRPAVV_					0	0	0		ENST00000595973.2_1_19:18493140-18496906:+|nuORF	ENST00000595973.2_1_19:18493140-18496906:+|nuORF	ENST00000595973.2_1_19:18493140-18496906:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.2607421875	2	496.803626	991.592698	-2.0263	-0.0010067	2.282	0.0011337	0.25569	0.00012703	496.8043006004441	49.211	1.1422	46.069	45.832	46.974	-3.1416					23	21	2	0	0	0	0.027462	1	2735	2735		17.365	1.7232	1	25815			57721	14182	47608	47653	63238	63238					0.0965657515392877
TPRPTAAEL	9	Unmodified	_TPRPTAAEL_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENST00000547667.5_1_12:56531318-56532071:+|nuORF	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	OvCa9_classI_Rep2	2	478.2646179199219	2	478.263999	954.513445	-1.4372	-0.00068734	0.98646	0.00047179	-0.45069	-0.00021555	478.2643712792569	61.352	1.7932	58.593	57.987	59.78	-2.7593					85	34	5	0	0	0	0.2784	2	4559	4559;4566		65.465	14.273	1	559570			57722	4792	47609	47654	63239;63240	63239					0.03436883409131042
TPRPTAAEL	9	Unmodified	_TPRPTAAEL_					0	0	0		ENSG00000139641|ENST00000394048|ESYT1;nc|ENSG00000139641|Q9BSJ8-2|ESYT1;ENST00000547667.5_1_12:56531318-56532071:+|nuORF	ENSG00000139641|ENST00000394048|ESYT1	ENSG00000139641|ENST00000394048|ESYT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.264892578125	2	478.263999	954.513445	0.1499	7.1694E-05	-0.93042	-0.00044498	-0.78051	-0.00037329	478.2635310226388	62.047	3.0424	58.589	57.417	60.459	-3.4577					136	62	4	0	0	0	0.049969	2	4286	4286;4298		118.74	33.828	1	2869500			57723	4792	47609	47654	63241;63242	63241					0.03436883409131042
TPRQELKLP	9	Unmodified	_TPRQELKLP_					0	0	0		ENST00000392432.6_1_3:194308948-194309179:-|nuORF	ENST00000392432.6_1_3:194308948-194309179:-|nuORF	ENST00000392432.6_1_3:194308948-194309179:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	542.3126831054688	2	541.321848	1080.62914	0.7842	0.0004245	-1.158	-0.00062683	-0.37377	-0.00020233	541.3211776825686	114.12	0.80952	113.06	112.84	113.65	-1.055					23	15	2	0	0	0	0.027462	1	8432	8432		12.207	0	1	29126			57724	11224	47610	47655	63243	63243					0.09205407259969434
TPRQELKLP	9	Unmodified	_TPRQELKLP_					0	0	0		ENST00000392432.6_1_3:194308948-194309179:-|nuORF	ENST00000392432.6_1_3:194308948-194309179:-|nuORF	ENST00000392432.6_1_3:194308948-194309179:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	541.321848	1080.62914	-0.13208	-7.15E-05	-0.50927	-0.00027568	-0.64136	-0.00034718	541.3216313089928	113.46	1.0869	113.34	113.07	114.16	-0.11777	0.16788	0.00032192	NaN	16.007	27	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36014			57725	11224	47610	47655							0.09205407259969434
TPRQPPQVAP	10	Unmodified	_TPRQPPQVAP_					0	0	0			REV__ENSG00000161992|ENST00000409413|PRR35	REV__ENSG00000161992|ENST00000409413|PRR35	MULTI-SECPEP	OvCa9_classI_Rep3	3	546.2998046875	2	545.803823	1089.59309	-0.11621	-6.3425E-05	1.7825	0.0009729	1.6663	0.00090947	545.8041593394994	72.536	0.59364	69.933	69.424	70.018	-2.6023					19	11	3	0	0	0	0.027056	1	3429	3429		20.947	0.95016	1	148090	+		57726	20715	47611	47656	63244	63244					0.05187950083131909
TPRRPFEKSRL	11	Unmodified	_TPRRPFEKSRL_					0	0	0		ENSG00000170889|ENST00000302907|RPS9;ENST00000460761.1_1_19:54705052-54705521:+|nuORF	ENSG00000170889|ENST00000302907|RPS9	ENSG00000170889|ENST00000302907|RPS9	MULTI-MSMS	OvCa9_classI_Rep2	2	462.9375305175781	3	462.936999	1385.78917	0.079191	3.666E-05	-0.90827	-0.00042047	-0.82908	-0.00038381	462.9367014144655	44.408	4.3763	41.698	41.303	45.679	-2.7097					263	87	6	0	0	0	0.50203	3	2601	2505;2523;2601		53.597	9.2197	1	4456400			57727	7148	47612	47657	63245;63246;63247	63247					0.1117033525702027
TPRRPFEKSRL	11	Unmodified	_TPRRPFEKSRL_					0	0	0		ENSG00000170889|ENST00000302907|RPS9;ENST00000460761.1_1_19:54705052-54705521:+|nuORF	ENSG00000170889|ENST00000302907|RPS9	ENSG00000170889|ENST00000302907|RPS9	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.93829345703125	3	462.936999	1385.78917	-1.4875	-0.00068863	0.6489	0.0003004	-0.83863	-0.00038823	462.9373949501134	44.694	4.8335	41.655	41.207	46.04	-3.0385					274	93	6	0	0	0	0.57493	1	2293	2293		46.955	13.916	1	4600900			57728	7148	47612	47657	63248	63248					0.1117033525702027
TPRSETRVGHG	11	Unmodified	_TPRSETRVGHG_					0	0	0			REV__ENST00000563197.5_2_16:30006766-30006862:+|nuORF	REV__ENST00000563197.5_2_16:30006766-30006862:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	598.8104858398438	2	598.810168	1195.60578	0.75656	0.00045303	-3.4127	-0.0020436	-2.6562	-0.0015905	598.808152304731	112.14	1.5716	110.62	110.32	111.89	-1.5111					112	30	5	0	0	0	0.61983	1	10336	10336		42.864	5.0528	1	1223900	+		57729	27654	47613	47658	63249	63249					0.015803614753849615
TPRSPTSAF	9	Unmodified	_TPRSPTSAF_					0	0	0		ENST00000423751.2_1_7:99757553-99764836:-|nuORF;nc|ENSG00000197093|Q96RP7-2|GAL3ST4;ENST00000413800.5_1_7:99764329-99764836:-|nuORF	ENST00000423751.2_1_7:99757553-99764836:-|nuORF	ENST00000423751.2_1_7:99757553-99764836:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.24951171875	2	482.248349	962.482145	-0.20782	-0.00010022	-0.11731	-5.6574E-05	-0.32513	-0.00015679	482.24819323476015	62.118	1.2056	58.66	58.197	59.403	-3.4577					80	24	4	0	0	0	0.22621	2	4318	4305;4318		71.877	6.5217	1	654250			57730	11706	47614	47659	63250;63251	63251					-0.0005968962495899177
TPRSPTSAF	9	Unmodified	_TPRSPTSAF_					0	0	0		ENST00000423751.2_1_7:99757553-99764836:-|nuORF;nc|ENSG00000197093|Q96RP7-2|GAL3ST4;ENST00000413800.5_1_7:99764329-99764836:-|nuORF	ENST00000423751.2_1_7:99757553-99764836:-|nuORF	ENST00000423751.2_1_7:99757553-99764836:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	482.248349	962.482145	-1.5359	-0.00074068	1.4127	0.00068125	-0.12323	-5.9428E-05	482.2489390187573	61.442	2.2644	58.683	57.934	60.199	-2.7593	0.011351	0.00095993	NaN	71.877	76	43	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	158920			57731	11706	47614	47659							-0.0005968962495899177
TPRSTVGVAVL	11	Unmodified	_TPRSTVGVAVL_					0	0	0		nc|ENSG00000109790|Q96PQ7-5|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	MULTI-MSMS	OvCa9_classI_Rep2	2	550.3259887695312	2	550.327131	1098.63971	-0.25059	-0.0001379	-0.34715	-0.00019105	-0.59774	-0.00032895	550.3269039710714	83.949	1.6656	82.403	81.784	83.449	-1.5462					94	32	4	0	0	0	0.26821	1	7211	7211		70.816	7.5099	1	662850			57732	2735	47615	47660	63252	63252					0.09433389914420331
TPRSTVGVAVL	11	Unmodified	_TPRSTVGVAVL_					0	0	0		nc|ENSG00000109790|Q96PQ7-5|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	MULTI-MSMS	OvCa9_classI_Rep3	3	550.3278198242188	2	550.327131	1098.63971	-1.5395	-0.00084725	0.74414	0.00040952	-0.79539	-0.00043772	550.3275660732565	84.687	1.7638	82.426	81.881	83.645	-2.261					107	35	5	0	0	0	0.29406	2	4919	4919;4926		68.846	14.07	1	1227100			57733	2735	47615	47660	63253;63254	63253					0.09433389914420331
TPRSTVGVAVL	11	Unmodified	_TPRSTVGVAVL_					0	0	0		nc|ENSG00000109790|Q96PQ7-5|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	MULTI-MSMS	OvCa9_classI_Rep3	3	550.3280029296875	2	550.327131	1098.63971	-1.5659	-0.00086175	0.7839	0.0004314	-0.78198	-0.00043035	550.3275336090328	86.284	1.4089	84.064	83.686	85.095	-2.2204					106	27	5	0	0	0	0.29406	1	5112	5112		68.846	7.1549	1	3899600			57734	2735	47615	47660	63255	63255					0.09433389914420331
TPRSTVGVAVL	11	Unmodified	_TPRSTVGVAVL_					0	0	0		nc|ENSG00000109790|Q96PQ7-5|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.3276977539062	2	550.327131	1098.63971	1.1776	0.00064806	-1.611	-0.00088659	-0.43344	-0.00023853	550.3261861557347	85.082	1.568	82.435	82.025	83.593	-2.6463					91	31	4	0	0	0	0.29406	1	7142	7142		68.846	14.124	1	1352000			57735	2735	47615	47660	63256	63256					0.09433389914420331
TPRSTVGVAVL	11	Unmodified	_TPRSTVGVAVL_					0	0	0		nc|ENSG00000109790|Q96PQ7-5|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.3277587890625	2	550.327131	1098.63971	0.71282	0.00039229	-2.7777	-0.0015287	-2.0649	-0.0011364	550.3256260191897	86.705	1.5914	84.078	83.613	85.204	-2.6269					98	31	4	0	0	0	0.13051	1	7338	7338		90.601	10.146	1	3279500			57736	2735	47615	47660	63257	63257					0.09433389914420331
TPRSTVGVVAL	11	Unmodified	_TPRSTVGVVAL_					0	0	0		ENSG00000102271|ENST00000373119|KLHL4;nc|ENSG00000102271|Q9C0H6-2|KLHL4	ENSG00000102271|ENST00000373119|KLHL4	ENSG00000102271|ENST00000373119|KLHL4	MULTI-MSMS	OvCa9_classI_Rep2	2	550.3263549804688	2	550.327131	1098.63971	-0.8792	-0.00048385	-0.44419	-0.00024445	-1.3234	-0.0007283	550.3268942315257	85.56	1.6104	84.069	83.505	85.115	-1.4907					109	31	5	0	0	0	0.41656	3	7395	7390;7395;7432		59.931	3.6122	1	1857300			57737	2235	47616	47661	63258;63259;63260	63259					0.09433389914420331
TPRSTVGVVAL	11	Unmodified	_TPRSTVGVVAL_					0	0	0		ENSG00000102271|ENST00000373119|KLHL4;nc|ENSG00000102271|Q9C0H6-2|KLHL4	ENSG00000102271|ENST00000373119|KLHL4	ENSG00000102271|ENST00000373119|KLHL4	MULTI-MSMS	OvCa9_classI_Rep3	3	550.327880859375	2	550.327131	1098.63971	-1.5659	-0.00086175	0.7839	0.0004314	-0.78198	-0.00043035	550.3275336090328	86.284	1.4089	84.064	83.686	85.095	-2.2204					106	27	5	0	0	0	0.21275	2	5134	5128;5134		78.264	0	1	3899600			57738	2235	47616	47661	63261;63262	63262					0.09433389914420331
TPRSTVGVVAL	11	Unmodified	_TPRSTVGVVAL_					0	0	0		ENSG00000102271|ENST00000373119|KLHL4;nc|ENSG00000102271|Q9C0H6-2|KLHL4	ENSG00000102271|ENST00000373119|KLHL4	ENSG00000102271|ENST00000373119|KLHL4	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.3284301757812	2	550.327131	1098.63971	0.71282	0.00039229	-2.7777	-0.0015287	-2.0649	-0.0011364	550.3256260191897	86.705	1.5914	84.078	83.613	85.204	-2.6269					98	31	4	0	0	0	0.36705	1	7388	7388		63.534	0	1	3279500			57739	2235	47616	47661	63263	63263					0.09433389914420331
TPRTSLPHFH	10	Unmodified	_TPRTSLPHFH_					0	0	0		nc|ENSG00000158856|Q08495-3|DMTN;nc|ENSG00000158856|Q08495-4|DMTN;nc|ENSG00000158856|Q08495-2|DMTN;ENSG00000158856|ENST00000358242|DMTN	nc|ENSG00000158856|Q08495-3|DMTN	nc|ENSG00000158856|Q08495-3|DMTN	MULTI-MSMS	OvCa9_classI_Rep3	3	596.8173217773438	2	596.814722	1191.61489	3.1335	0.0018701	-0.44132	-0.00026339	2.6922	0.0016067	596.8143723057162	57.305	2.9299	54.154	53.228	56.158	-3.1504					108	83	2	0	0	0	0.79213	1	1755	1755		19.997	0.89325	1	40554			57740	5975	47617	47662	63264	63264					0.02674754831696191
TPRVPDNSL	9	Unmodified	_TPRVPDNSL_					0	0	0		ENSG00000109079|ENST00000226225|TNFAIP1;nc|ENSG00000109079|Q13829-2|TNFAIP1	ENSG00000109079|ENST00000226225|TNFAIP1	ENSG00000109079|ENST00000226225|TNFAIP1	MULTI-MSMS	OvCa9_classI_Rep2	2	499.7657470703125	2	499.766906	997.519259	0.42372	0.00021176	-0.8957	-0.00044764	-0.47198	-0.00023588	499.7664502520942	66.189	1.8862	63.493	62.872	64.758	-2.6958					107	37	5	0	0	0	0.027568	4	5122	5116;5122;5128;5135		138.06	42.247	1	845690			57741	2695	47618	47663	63265;63266;63267;63268	63266					0.020399819208023473
TPRVPDNSL	9	Unmodified	_TPRVPDNSL_					0	0	0		ENSG00000109079|ENST00000226225|TNFAIP1;nc|ENSG00000109079|Q13829-2|TNFAIP1	ENSG00000109079|ENST00000226225|TNFAIP1	ENSG00000109079|ENST00000226225|TNFAIP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.7685241699219	2	499.766906	997.519259	-0.14707	-7.3502E-05	-0.43133	-0.00021556	-0.5784	-0.00028907	499.76672181422185	66.809	2.3076	63.319	62.756	65.064	-3.4902					120	46	4	0	0	0	0.010153	4	4885	4873;4885;4897;4910		168.26	56.61	1	4232900			57742	2695	47618	47663	63269;63270;63271;63272	63270					0.020399819208023473
TPRYFPNAYV	10	Unmodified	_TPRYFPNAYV_					0	0	0			REV__nc|ENSG00000099260|Q9NP74-2|PALMD	REV__nc|ENSG00000099260|Q9NP74-2|PALMD	MULTI-SECPEP	OvCa9_classI_Rep3	3	614.7843627929688	2	614.31148	1226.60841	1.0716	0.00065832	-1.2322	-0.00075694	-0.16054	-9.8621E-05	614.3105749168485	98.747	1.8955	97.062	96.543	98.438	-1.685					96	36	4	0	0	0	0.026956	1	6662	6662		19.997	5.8596	1	206120	+		57743	17317	47619	47664	63273	63273					0.0041681688030621444
TPSAESHVES	10	Unmodified	_TPSAESHVES_					0	0	0			REV__ENSG00000143520|ENST00000388718|FLG2	REV__ENSG00000143520|ENST00000388718|FLG2	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.2368774414062	2	522.235635	1042.45672	-1.8458	-0.00096395	4.4206	0.0023086	2.5748	0.0013447	522.2369991470116	146.69	1.7623	145.26	144.96	146.73	-1.4357					73	34	4	0	0	0	0.67931	1	14443	14443		32.812	2.9709	1	84382	+	+	57744	16215	47620	47665	63274	63274					-0.06281208938025884
TPSAESHVES	10	Unmodified	_TPSAESHVES_					0	0	0			REV__ENSG00000143520|ENST00000388718|FLG2	REV__ENSG00000143520|ENST00000388718|FLG2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	522.235635	1042.45672	-1.8897	-0.00098688	4.1524	0.0021685	2.2627	0.0011816	522.2371582328773	145.58	1.091	145.36	144.98	146.07	-0.22696	0.078737	-0.00058896	NaN	32.812	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53698	+	+	57745	16215	47620	47665							-0.06281208938025884
TPSAESHVES	10	Unmodified	_TPSAESHVES_					0	0	0			REV__ENSG00000143520|ENST00000388718|FLG2	REV__ENSG00000143520|ENST00000388718|FLG2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	522.235635	1042.45672	-3.617	-0.0018889	5.7772	0.0030171	2.1602	0.0011281	522.2378759806901	146.18	0.94357	145.22	144.95	145.89	-0.95947	-0.059073	0.0011081	NaN	32.812	67	18	6	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71478	+	+	57746	16215	47620	47665							-0.06281208938025884
TPSAESHVES	10	Unmodified	_TPSAESHVES_					0	0	0			REV__ENSG00000143520|ENST00000388718|FLG2	REV__ENSG00000143520|ENST00000388718|FLG2	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	522.235635	1042.45672	-1.8458	-0.00096395	4.4206	0.0023086	2.5748	0.0013447	522.2369991470116	146.69	1.7623	145.26	144.96	146.73	-1.4357	-0.019664	-0.00030881	NaN	32.812	73	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84382	+	+	57747	16215	47620	47665							-0.06281208938025884
TPSAPFRNRKM	11	Unmodified	_TPSAPFRNRKM_					0	0	0			REV__ENST00000316170.7_2_6:10556510-10556552:+|nuORF	REV__ENST00000316170.7_2_6:10556510-10556552:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	435.56884765625	3	435.567918	1303.68192	0.064223	2.7973E-05	3.1041	0.001352	3.1683	0.00138	435.5690891837121	25.438	0.30142	25.438	25.242	25.544	0					9	5	2	0	0	0	0.71831	1	566	566		23.378	2.3457	1	59204	+		57748	24405	47621	47666	63275	63275					0.04223042051125958
TPSEANLNIT	10	Unmodified	_TPSEANLNIT_					0	0	0		ENSG00000107771|ENST00000372088|CCSER2;ENST00000224756.12_1_10:86230212-86274020:+|nuORF	ENSG00000107771|ENST00000372088|CCSER2	ENSG00000107771|ENST00000372088|CCSER2	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.2716064453125	2	530.269478	1058.5244	0.99478	0.0005275	-1.9658	-0.0010424	-0.97106	-0.00051492	530.2680849686909	137.83	0.6871	136.3	136.07	136.76	-1.5284					28	15	2	0	0	0	0.58067	1	13440	13440		44.377	5.571	1	36612			57749	2615	47622	47667	63276	63276					-0.002517590072557141
TPSEPHPVL	9	Unmodified	_TPSEPHPVL_					0	0	0		ENST00000604759.1_1_14:39684672-39685536:+|nuORF;nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2	ENST00000604759.1_1_14:39684672-39685536:+|nuORF	ENST00000604759.1_1_14:39684672-39685536:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	488.7588195800781	2	488.758549	975.502546	-0.74556	-0.0003644	1.6047	0.00078429	0.8591	0.00041989	488.75920058944064	68.463	1.6844	65.843	65.131	66.815	-2.6203					75	33	4	0	0	0	0.21395	1	5407	5407		73.975	17.254	1	300420			57750	8821	47623	47668	63277	63277					0.013814810348435458
TPSEPHPVL	9	Unmodified	_TPSEPHPVL_					0	0	0		ENST00000604759.1_1_14:39684672-39685536:+|nuORF;nc|ENSG00000198492|Q9Y5A9-2|YTHDF2;ENSG00000198492|ENST00000373812|YTHDF2	ENST00000604759.1_1_14:39684672-39685536:+|nuORF	ENST00000604759.1_1_14:39684672-39685536:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.75970458984375	2	488.758549	975.502546	-0.34209	-0.0001672	1.002	0.00048973	0.6599	0.00032253	488.7589893675679	69.269	1.9571	65.787	65.221	67.178	-3.4812					98	39	4	0	0	0	0.098892	3	5200	5175;5188;5200		97.473	37.354	1	1253600			57751	8821	47623	47668	63278;63279;63280	63280					0.013814810348435458
TPSLCPLVS	9	Unmodified	_TPSLCPLVS_					0	0	0			REV__ENST00000351989.7_1_22:20098681-20098984:+|nuORF	REV__ENST00000351989.7_1_22:20098681-20098984:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	458.74566650390625	2	458.744053	915.473554	1.2828	0.00058847	2.9797	0.0013669	4.2625	0.0019554	458.7452325907729	42.803	1.385	40.093	39.818	41.203	-2.7097					61	27	4	0	0	0	0.46377	1	2326	2326		45.952	0	1	212930	+		57752	24723	47624	47669	63281	63281					0.012436204142204588
TPSLRHRGQ	9	Unmodified	_TPSLRHRGQ_					0	0	0		ENSG00000164897|ENST00000297533|TMUB1	ENSG00000164897|ENST00000297533|TMUB1	ENSG00000164897|ENST00000297533|TMUB1	MULTI-MSMS	OvCa9_classI_Rep2	2	526.29296875	2	526.291414	1050.56827	-0.28702	-0.00015105	2.9875	0.0015723	2.7005	0.0014212	526.2928225644937	40.219	0.64469	37.509	37.252	37.897	-2.7097					30	12	3	0	0	0	0.40667	1	2017	2017		51.335	5.3632	1	100860			57753	6496	47625	47670	63282	63282					0.045013150004251656
TPSLVKSTSQL	11	Unmodified	_TPSLVKSTSQL_					0	0	0		ENSG00000135390|ENST00000394349|ATP5MC2;nc|ENSG00000135390|Q06055-3|ATP5MC2;nc|ENSG00000135390|Q06055-2|ATP5MC2	ENSG00000135390|ENST00000394349|ATP5MC2	ENSG00000135390|ENST00000394349|ATP5MC2	MULTI-MSMS	OvCa9_classI_Rep2	2	580.82958984375	2	580.829703	1159.64485	-0.92916	-0.00053968	0.47458	0.00027565	-0.45458	-0.00026403	580.8299542305197	75.861	2.9157	74.007	73.271	76.187	-1.854					154	54	5	0	0	0	2.9537E-15	14	6252	6217;6222;6228;6235;6240;6246;6252;6257;6263;6269;6275;6281;6287;6294		218.58	109.1	1	1846600			57754	4373	47626	47671	63283;63284;63285;63286;63287;63288;63289;63290;63291;63292;63293;63294;63295;63296	63289					0.07141648986407745
TPSLVKSTSQL	11	Unmodified	_TPSLVKSTSQL_					0	0	0		ENSG00000135390|ENST00000394349|ATP5MC2;nc|ENSG00000135390|Q06055-3|ATP5MC2;nc|ENSG00000135390|Q06055-2|ATP5MC2	ENSG00000135390|ENST00000394349|ATP5MC2	ENSG00000135390|ENST00000394349|ATP5MC2	MULTI-MSMS	OvCa9_classI_Rep3	3	580.830078125	2	580.829703	1159.64485	-1.7367	-0.0010088	1.2352	0.00071744	-0.50154	-0.00029131	580.8304530813659	75.967	3.1197	73.596	73.164	76.284	-2.3715					179	60	6	0	0	0	6.6564E-20	14	3870	3864;3870;3875;3881;3888;3894;3900;3907;3914;3920;3925;3931;3939;3945		232.72	128.71	1	5602000			57755	4373	47626	47671	63297;63298;63299;63300;63301;63302;63303;63304;63305;63306;63307;63308;63309;63310	63298					0.07141648986407745
TPSLVKSTSQL	11	Unmodified	_TPSLVKSTSQL_					0	0	0		ENSG00000135390|ENST00000394349|ATP5MC2;nc|ENSG00000135390|Q06055-3|ATP5MC2;nc|ENSG00000135390|Q06055-2|ATP5MC2	ENSG00000135390|ENST00000394349|ATP5MC2	ENSG00000135390|ENST00000394349|ATP5MC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	580.83056640625	2	580.829703	1159.64485	-1.0179	-0.00059122	0.49957	0.00029017	-0.51831	-0.00030105	580.8300130339702	76.748	2.0203	73.809	73.459	75.479	-2.9389					134	41	5	0	0	0	1.8972E-13	10	6105	6094;6105;6116;6128;6140;6152;6165;6177;6190;6208		204.79	108.34	1	5207900			57756	4373	47626	47671	63311;63312;63313;63314;63315;63316;63317;63318;63319;63320	63312					0.07141648986407745
TPSPKSAFF	9	Unmodified	_TPSPKSAFF_					0	0	0			REV__nc|ENSG00000113763|Q6ZN44-3|UNC5A	REV__nc|ENSG00000113763|Q6ZN44-3|UNC5A	MULTI-MSMS	OvCa9_classI_Rep2	2	491.25335693359375	2	491.255643	980.496732	-1.3136	-0.00064532	-2.7532	-0.0013525	-4.0668	-0.0019978	491.2541687874018	62.879	2.0463	60.135	59.745	61.791	-2.7444					81	38	4	0	0	0	0.16562	1	4753	4753		82.241	16.775	1	565620	+		57757	18170	47627	47672	63321	63321					0.005703825231876181
TPSRKASLPR	10	Unmodified	_TPSRKASLPR_					0	0	0			REV__nc|ENSG00000074054|Q7Z460-2|CLASP1	REV__nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.3229370117188	2	556.830372	1111.64619	1.1528	0.00064192	1.8301	0.0010191	2.9829	0.001661	556.831131292456	89.546	1.3514	86.971	86.656	88.007	-2.575					41	26	2	0	0	0	0.026681	1	7780	7780		36.447	0.82846	1	125810	+		57758	16946	47628	47673	63322	63322					0.0948332786579158
TPSRKASLPR	10	Unmodified	_TPSRKASLPR_					0	0	0			REV__nc|ENSG00000074054|Q7Z460-2|CLASP1	REV__nc|ENSG00000074054|Q7Z460-2|CLASP1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	556.830372	1111.64619	-0.87316	-0.0004862	3.9614	0.0022058	3.0882	0.0017196	556.8323439355494	89.2	1.5043	87.069	86.654	88.158	-2.1309	0.049061	0.00093046	NaN	36.447	45	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	155830	+		57759	16946	47628	47673							0.0948332786579158
TPSRKGLVL	9	Unmodified	_TPSRKGLVL_					0	0	0		ENST00000580997.1_1_17:7468099-7469096:+|nuORF;ENSG00000161956|ENST00000321337|SENP3	ENST00000580997.1_1_17:7468099-7469096:+|nuORF	ENST00000580997.1_1_17:7468099-7469096:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	485.8052062988281	2	485.805834	969.597115	-0.75076	-0.00036472	0.6122	0.00029741	-0.13856	-6.7315E-05	485.80603826412454	56.324	1.6845	53.52	52.978	54.662	-2.804					75	33	3	0	0	0	0.46356	3	3961	3943;3961;3967		45.972	7.1661	1	355580			57760	6145	47629	47674	63323;63324;63325	63324					0.11110039576851705
TPSRKGLVL	9	Unmodified	_TPSRKGLVL_					0	0	0		ENST00000580997.1_1_17:7468099-7469096:+|nuORF;ENSG00000161956|ENST00000321337|SENP3	ENST00000580997.1_1_17:7468099-7469096:+|nuORF	ENST00000580997.1_1_17:7468099-7469096:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.8074035644531	2	485.805834	969.597115	0.15988	7.767E-05	-0.35175	-0.00017088	-0.19187	-9.3214E-05	485.8056035069245	57.042	1.5758	53.697	52.97	54.546	-3.3449					85	30	4	0	0	0	0.38969	1	3691	3691		52.937	3.4007	1	643660			57761	6145	47629	47674	63326	63326					0.11110039576851705
TPSRYPTLS	9	Unmodified	_TPSRYPTLS_					0	0	0			REV__ENST00000327492.3_1_22:41832100-41832166:-|nuORF	REV__ENST00000327492.3_1_22:41832100-41832166:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.2702941894531	2	511.269281	1020.52401	-0.88491	-0.00045242	-0.045683	-2.3356E-05	-0.93059	-0.00047578	511.26897262437	70.249	1.608	66.768	66.442	68.05	-3.4812					49	32	3	0	0	0	0.24951	1	5302	5302		68.787	5.253	1	485730	+		57762	24500	47630	47675	63327	63327					0.0145686606357458
TPSRYPTLS	9	Unmodified	_TPSRYPTLS_					0	0	0			REV__ENST00000327492.3_1_22:41832100-41832166:-|nuORF	REV__ENST00000327492.3_1_22:41832100-41832166:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	511.269281	1020.52401	-0.55735	-0.00028496	0.0035935	1.8373E-06	-0.55376	-0.00028312	511.2694469538695	69.39	0.89847	66.77	66.217	67.115	-2.6203	0.0011455	1.2173E-05	NaN	68.787	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91154	+		57763	24500	47630	47675							0.0145686606357458
TPSRYPTLS	9	Unmodified	_TPSRYPTLS_					0	0	0			REV__ENST00000327492.3_1_22:41832100-41832166:-|nuORF	REV__ENST00000327492.3_1_22:41832100-41832166:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	511.269281	1020.52401	-0.88491	-0.00045242	-0.045683	-2.3356E-05	-0.93059	-0.00047578	511.26897262437	70.249	1.608	66.768	66.442	68.05	-3.4812	-0.0011455	-3.8215E-05	NaN	68.787	49	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	485730	+		57764	24500	47630	47675							0.0145686606357458
TPSSRETSLL	10	Unmodified	_TPSSRETSLL_					0	0	0			REV__MFHAS1|p.V624Pfs*59|1|0.13|ENSG00000147324|chr8:8891193-8891194|-/GA|frameshift_variant	REV__MFHAS1|p.V624Pfs*59|1|0.13|ENSG00000147324|chr8:8891193-8891194|-/GA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.3400268554688	2	545.790578	1089.5666	1.183	0.00064565	-2.3826	-0.0013004	-1.1996	-0.00065474	546.2909759186689	124.72	0.60248	124.72	124.42	125.02	0					15	12	2	0	0	0	0.026826	1	14421	14421		44.377	9.2252	1	53785	+		57765	28665	47631	47676	63328	63328					0.025402164011666173
TPSSRPASL	9	Unmodified	_TPSSRPASL_					0	0	0		ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	ENSG00000138629|ENST00000395081|UBL7	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.2491455078125	2	458.248349	914.482145	-0.19768	-9.0585E-05	0.15039	6.8915E-05	-0.047287	-2.1669E-05	458.24825383252863	58.765	2.2363	55.373	54.6	56.837	-3.392					66	44	3	0	0	0	0.13482	1	3879	3879		87.754	0	1	608310			57766	4700	47632	47677	63329	63329					0.021483103750369992
TPSSVRKQL	9	Unmodified	_TPSSVRKQL_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.2989501953125	2	508.298373	1014.58219	-0.66964	-0.00034038	0.025787	1.3108E-05	-0.64386	-0.00032727	508.29841307258295	39.906	0.91437	36.952	36.665	37.58	-2.9541					37	17	3	0	0	0	0.22621	1	1677	1677		71.877	20.542	1	227480			57767	4072	47633	47678	63330	63330					0.07548547708859132
TPSSVRKQL	9	Unmodified	_TPSSVRKQL_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	508.298373	1014.58219	-0.81422	-0.00041387	0.31895	0.00016212	-0.49527	-0.00025175	508.2983758967772	39.539	0.69534	36.83	36.657	37.352	-2.7097	-0.061115	0.00011521	NaN	71.877	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49516			57768	4072	47633	47678							0.07548547708859132
TPSVSRTSF	9	Unmodified	_TPSVSRTSF_					0	0	0		CON__Q5XQN5;CON__Q922U2;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647	CON__Q5XQN5;ENST00000552629.5_1_12:52910419-52914113:-|nuORF	ENST00000552629.5_1_12:52910419-52914113:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	491.2529602050781	2	491.253631	980.49271	-1.3136	-0.00064532	1.3412	0.00065886	0.02757	1.3544E-05	491.2541687874018	62.879	2.0463	60.135	59.745	61.791	-2.7444					81	38	4	0	0	0	0.1149	4	4729	4729;4732;4738;4745		93.143	23.516	1	565620		+	57769	653;627	47634	47679	63331;63332;63333;63334	63331					0.0016829302948053737
TPSVSRTSF	9	Unmodified	_TPSVSRTSF_					0	0	0		CON__Q5XQN5;CON__Q922U2;ENST00000552629.5_1_12:52910419-52914113:-|nuORF;ENSG00000186081|ENST00000252242|KRT5;CON__P13647	CON__Q5XQN5;ENST00000552629.5_1_12:52910419-52914113:-|nuORF	ENST00000552629.5_1_12:52910419-52914113:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	491.2545471191406	2	491.253631	980.49271	-0.020845	-1.024E-05	-0.55582	-0.00027305	-0.57666	-0.00028329	491.2533077791235	63.58	2.1281	60.105	59.82	61.948	-3.475					101	43	5	0	0	0	0.017173	5	4496	4472;4484;4496;4508;4523		150.36	70.911	1	3023900		+	57770	653;627	47634	47679	63335;63336;63337;63338;63339	63337					0.0016829302948053737
TPTANQSRDS	10	Unmodified	_TPTANQSRDS_					0	0	0			REV__ENSG00000248905|ENST00000616417|FMN1	REV__ENSG00000248905|ENST00000616417|FMN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.7838134765625	2	538.751984	1075.48942	-0.46323	-0.00024956	3.7534	0.0020222	3.2902	0.0017726	538.7537595134245	59.8	0.63814	56.408	56.199	56.837	-3.392					14	12	2	0	0	0	0.026994	1	3999	3999		25.574	12.615	1	27127	+		57771	23486	47635	47680	63340	63340					-0.04531001815189484
TPTKHKII	8	Unmodified	_TPTKHKII_					0	0	0		nc|ENSG00000196268|Q6ZR52|ZNF493;ENSG00000196268|ENST00000392288|ZNF493	nc|ENSG00000196268|Q6ZR52|ZNF493	nc|ENSG00000196268|Q6ZR52|ZNF493	MULTI-SECPEP	OvCa99_classI_Rep5	1	468.3067626953125	2	469.295102	936.575651	0.2805	0.00013164	-0.35825	-0.00016812	-0.077749	-3.6487E-05	469.29472096754245	62.529	0.36793	62.529	62.335	62.703	0					13	8	3	0	0	0	0.028476	1	5561	5561		12.959	0	1	139290			57772	8584	47636	47681	63341	63341					0.10482654548138726
TPTPELISKK	10	Unmodified	_TPTPELISKK_					0	0	0		ENST00000480548.5_1_1:67137634-67156055:+|nuORF;nc|ENSG00000118473|Q9BQI5-4|SGIP1;nc|ENSG00000118473|Q9BQI5-5|SGIP1;ENSG00000118473|ENST00000371037|SGIP1;nc|ENSG00000118473|Q9BQI5-2|SGIP1;nc|ENSG00000118473|Q9BQI5-3|SGIP1	ENST00000480548.5_1_1:67137634-67156055:+|nuORF	ENST00000480548.5_1_1:67137634-67156055:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.3300170898438	2	557.329339	1112.64412	-0.031635	-1.7631E-05	-0.86807	-0.0004838	-0.8997	-0.00050143	557.3287360893569	82.001	2.0398	79.318	78.914	80.954	-2.6829					73	41	4	0	0	0	0.5675	1	6875	6875		45.972	0	1	770810			57773	12530	47637	47682	63342	63342					0.0923085433732922
TPTPWALSL	9	Unmodified	_TPTPWALSL_					0	0	0		ENST00000427199.2_1_5:114916936-114937963:-|nuORF	ENST00000427199.2_1_5:114916936-114937963:-|nuORF	ENST00000427199.2_1_5:114916936-114937963:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.2703552246094	2	493.271293	984.528032	-0.48362	-0.00023856	-2.1438	-0.0010575	-2.6274	-0.001296	493.2700862357715	101.11	1.1654	98.846	98.652	99.817	-2.2665					44	23	2	0	0	0	0.21395	1	9076	9076		73.975	5.1286	1	219060			57774	11751	47638	47683	63343	63343					0.035149555572729696
TPTQGFNIKSV	11	Unmodified	_TPTQGFNIKSV_					0	0	0		ENSG00000138175|ENST00000260746|ARL3	ENSG00000138175|ENST00000260746|ARL3	ENSG00000138175|ENST00000260746|ARL3	MULTI-MSMS	OvCa99_classI_Rep5	1	596.323974609375	2	596.322045	1190.62954	1.1787	0.00070286	0.85706	0.00051108	2.0357	0.0012139	596.322429748079	155.89	3.621	155.89	155.07	158.69	0					175	72	3	0	0	0	0.68757	1	18241	18241		33.922	0	1	345700			57775	4666	47639	47684	63344	63344					0.041847821891678905
TPTYRELSF	9	Unmodified	_TPTYRELSF_					0	0	0			REV__nc|ENSG00000156687|Q6UXZ4-2|UNC5D	REV__nc|ENSG00000156687|Q6UXZ4-2|UNC5D	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.8226318359375	2	557.282389	1112.55022	0.045596	2.541E-05	-1.5239	-0.00084926	-1.4783	-0.00082385	557.2809314434472	99.382	0.31284	97.057	96.899	97.212	-2.3253					10	5	2	0	0	0	0.027462	1	8873	8873		21.96	0	1	22370	+		57776	20491	47640	47685	63345	63345					-0.0015486476497699186
TPVATMSTIH	10	Unmodified	_TPVATMSTIH_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3185424804688	2	529.270967	1056.52738	0.84259	0.00044596	1.5913	0.00084225	2.4339	0.0012882	529.2715497536439	157.42	0.55392	157.42	157.2	157.75	0					16	10	2	0	0	0	0.026915	1	18472	18472		27.882	13.017	1	62726			57777	3283	47641	47686	63346	63346					0.0013779284593056218
TPVEKSGEP	9	Unmodified	_TPVEKSGEP_					0	0	0			REV__ENST00000574992.5_1_17:79871999-79873399:-|nuORF	REV__ENST00000574992.5_1_17:79871999-79873399:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.2628173828125	2	472.24019	942.465826	-0.17493	-8.2607E-05	1.8441	0.00087087	1.6692	0.00078826	472.2409569914689	42.181	0.55434	39.201	39.011	39.566	-2.9804					17	10	2	0	0	0	0.027462	1	1940	1940		32.812	0	1	36097	+		57778	27768	47642	47687	63347	63347					-0.007708155817113038
TPVLANILEA	10	Unmodified	_TPVLANILEA_					0	0	0		ENSG00000183735|ENST00000331710|TBK1;TBK1|p.E437Nfs*2|1|0.06|ENSG00000183735|chr12:64485985-64485985|G/-|frameshift_variant	ENSG00000183735|ENST00000331710|TBK1	ENSG00000183735|ENST00000331710|TBK1	MULTI-MSMS	OvCa99_classI_Rep5	1	520.8045654296875	2	520.802957	1039.59136	-1.1	-0.00057286	-0.34225	-0.00017825	-1.4422	-0.00075111	520.80307646	104.59	1.1199	104.59	104.32	105.44	0					56	25	4	0	0	0	0.46756	1	11723	11723		58.782	0	1	7987000			57779	8098	47643	47688	63348	63348					0.07314896274510829
TPVLLEKKS	9	Unmodified	_TPVLLEKKS_					0	0	0		PTPRN|p.E542Kfs*83|1|0.06|ENSG00000054356|chr2:219299092-219299093|-/AGAAGACAAAGGTATTTTG|frameshift_variant;PTPRN|p.E542Hfs*117|1|0.11|ENSG00000054356|chr2:219299091-219299092|-/AGTGTTGGATG|frameshift_variant;ENST00000462351.5_1_2:220160899-220172331:-|nuORF;nc|ENSG00000054356|Q16849-3|PTPRN;nc|ENSG00000054356|Q16849-2|PTPRN;ENSG00000054356|ENST00000295718|PTPRN	PTPRN|p.E542Kfs*83|1|0.06|ENSG00000054356|chr2:219299092-219299093|-/AGAAGACAAAGGTATTTTG|frameshift_variant	PTPRN|p.E542Kfs*83|1|0.06|ENSG00000054356|chr2:219299092-219299093|-/AGAAGACAAAGGTATTTTG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.81292724609375	2	507.813325	1013.6121	-3.7776	-0.0019183	3.6163	0.0018364	-0.16133	-8.1927E-05	507.8150097852563	152.29	1.1068	150.85	150.6	151.71	-1.435					49	23	3	0	0	0	0.6653	1	15088	15088		24.203	4.206	1	90122			57780	1208	47644	47689	63349	63349					0.1058348665419544
TPVLRLLN	8	Unmodified	_TPVLRLLN_					0	0	0		nc|ENSG00000152332|Q8TAS1-3|UHMK1;ENSG00000152332|ENST00000489294|UHMK1;nc|ENSG00000152332|Q8TAS1-2|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	nc|ENSG00000152332|Q8TAS1-3|UHMK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.2620544433594	2	463.295102	924.575651	-1.1619	-0.0005383	1.992	0.00092289	0.83012	0.00038459	463.2954015456252	69.827	0.28748	66.346	66.105	66.393	-3.4812					6	5	2	0	0	0	0.028476	1	5241	5241		18.324	0	1	14990			57781	15099	47645	47690	63350	63350					0.11034654548132039
TPVLSRRL	8	Unmodified	_TPVLSRRL_					0	0	0			REV__ENSG00000179314|ENST00000317744|WSCD1	REV__ENSG00000179314|ENST00000317744|WSCD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.77886962890625	2	471.298176	940.581799	-0.033872	-1.5964E-05	-0.49062	-0.00023123	-0.52449	-0.00024719	471.29634140339886	35.638	0.18701	35.638	35.52	35.707	0					5	3	2	0	0	0	0.028476	1	1807	1807		29.15	19.444	1	14392	+		57782	22119	47646	47691	63351	63351					0.10913172779669367
TPVNRSTL	8	Unmodified	_TPVNRSTL_					0	0	0		tr|A0A553SI51|A0A553SI51_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14195PE=4SV=1	tr|A0A553SI51|A0A553SI51_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14195PE=4SV=1	tr|A0A553SI51|A0A553SI51_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_14195PE=4SV=1	MSMS	OvCa9_classI_Rep4_	4	444.2515563964844	2	444.250892	886.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.924	1	43.852	43.352	44.352	-3.0724								0	0	0	0.06217	1	2491	2491		124.59	7.6907	1				57783	33344	47647	47692	63352	63352					0.03944614237661881
TPVSISETKSL	11	Unmodified	_TPVSISETKSL_					0	0	0			REV__EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant	REV__EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	581.3222045898438	2	581.321711	1160.62887	-1.2046	-0.00070026	1.4647	0.00085147	0.26011	0.00015121	581.3220787116137	79.809	1.0192	77.057	76.75	77.769	-2.7514					53	20	4	0	0	0	0.13051	1	6490	6490		90.601	15.558	1	331930	+		57784	18000	47648	47693	63353	63353					0.05497942749479989
TPVSISETKSL	11	Unmodified	_TPVSISETKSL_					0	0	0			REV__EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant	REV__EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	581.321711	1160.62887	-0.87903	-0.000511	0.80809	0.00046976	-0.070939	-4.1238E-05	581.3219473994171	79.385	1.2589	77.045	76.754	78.013	-2.3399	-0.0060435	-0.00023322	NaN	90.601	44	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	322040	+		57785	18000	47648	47693							0.05497942749479989
TPVSISETKSL	11	Unmodified	_TPVSISETKSL_					0	0	0			REV__EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant	REV__EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	581.321711	1160.62887	-1.2046	-0.00070026	1.4647	0.00085147	0.26011	0.00015121	581.3220787116137	79.809	1.0192	77.057	76.75	77.769	-2.7514	0.0060435	0.0005302	NaN	90.601	53	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	331930	+		57786	18000	47648	47693							0.05497942749479989
TPVSLGVIVQI	11	Unmodified	_TPVSLGVIVQI_					0	0	0			REV__tr|A0A7D7A1Y8|A0A7D7A1Y8_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_17470PE=4SV=1	REV__tr|A0A7D7A1Y8|A0A7D7A1Y8_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_17470PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	563.7916870117188	2	563.347532	1124.68051	1.9861	0.0011188	-1.4646	-0.00082507	0.52147	0.00029377	563.3466312054057	88.14	1.7212	86.772	86.399	88.12	-1.3676					108	34	5	0	0	0	0.025638	1	7722	7722		37.812	26.715	1	512260	+		57787	32514	47649	47694	63354	63354					0.12315731234048144
TPWDKPREF	9	Unmodified	_TPWDKPREF_					0	0	0		PITRM1-PFKP|2|fusion;PITRM1-PFKP|1|fusion;nc|ENSG00000107959|Q5JRX3-3|PITRM1;ENSG00000107959|ENST00000224949|PITRM1;nc|ENSG00000107959|Q5JRX3-2|PITRM1	PITRM1-PFKP|2|fusion	PITRM1-PFKP|2|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	588.2977905273438	2	588.29583	1174.57711	-0.12574	-7.3971E-05	2.6806	0.001577	2.5549	0.001503	588.2970977003064	86.655	1.6797	85.224	84.751	86.431	-1.4311					103	32	5	0	0	0	0.48324	1	7524	7524		44.117	0	1	558380			57788	2632	47650	47695	63355	63355					-0.0031975615377177746
TPWEAAAQEP	10	Unmodified	_TPWEAAAQEP_					0	0	0		ENST00000528637.5_1_11:16902899-16903058:-|nuORF	ENST00000528637.5_1_11:16902899-16903058:-|nuORF	ENST00000528637.5_1_11:16902899-16903058:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.7544555664062	2	550.256371	1098.49819	0.20025	0.00011019	3.6419	0.002004	3.8421	0.0021142	550.2580670896492	162.4	0.39961	162.4	162.13	162.53	0					19	7	4	0	0	0	0.026867	1	19012	19012		28.081	13.217	1	301140			57789	13259	47651	47696	63356	63356					-0.04712028178732908
TPYELRTID	9	Unmodified	_TPYELRTID_					0	0	0		nc|ENSG00000134574|Q92466-2|DDB2;PXMP2-DDB2|1|fusion;nc|ENSG00000134574|Q92466-4|DDB2;ENSG00000134574|ENST00000256996|DDB2;BBS1-DDB2|1|fusion	nc|ENSG00000134574|Q92466-2|DDB2	nc|ENSG00000134574|Q92466-2|DDB2	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.3236694335938	2	554.287671	1106.56079	-0.11135	-6.1719E-05	0.87623	0.00048568	0.76488	0.00042396	554.2878138804002	67.583	0.47054	67.583	67.371	67.842	0					23	11	3	0	0	0	0.027462	1	6352	6352		37.812	7.4938	1	1035500			57790	145	47652	47697	63357	63357					0.011771178894832701
TPYELRTID	9	Unmodified	_TPYELRTID_					0	0	0		nc|ENSG00000134574|Q92466-2|DDB2;PXMP2-DDB2|1|fusion;nc|ENSG00000134574|Q92466-4|DDB2;ENSG00000134574|ENST00000256996|DDB2;BBS1-DDB2|1|fusion	nc|ENSG00000134574|Q92466-2|DDB2	nc|ENSG00000134574|Q92466-2|DDB2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	554.287671	1106.56079	0.56492	0.00031313	-1.2061	-0.00066853	-0.64118	-0.0003554	554.2872592636419	69.971	0.75087	67.401	67.165	67.916	-2.5707	-0.066097	-0.0021195	NaN	54.776	20	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12246			57791	145	47652	47697							0.011771178894832701
TPYELRTID	9	Unmodified	_TPYELRTID_					0	0	0		nc|ENSG00000134574|Q92466-2|DDB2;PXMP2-DDB2|1|fusion;nc|ENSG00000134574|Q92466-4|DDB2;ENSG00000134574|ENST00000256996|DDB2;BBS1-DDB2|1|fusion	nc|ENSG00000134574|Q92466-2|DDB2	nc|ENSG00000134574|Q92466-2|DDB2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	554.287671	1106.56079	-0.48272	-0.00026756	1.1832	0.00065585	0.70051	0.00038828	554.2884750553594	70.873	0.62277	67.416	67.251	67.874	-3.4563	-0.050308	0.00052926	NaN	54.776	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51073			57792	145	47652	47697							0.011771178894832701
TPYFAWSIID	10	Unmodified	_TPYFAWSIID_					0	0	0		tr|A0A7D6VVT8|A0A7D6VVT8_9CLOTDUF4116domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06385PE=4SV=1	tr|A0A7D6VVT8|A0A7D6VVT8_9CLOTDUF4116domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06385PE=4SV=1	tr|A0A7D6VVT8|A0A7D6VVT8_9CLOTDUF4116domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06385PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	606.3161010742188	2	606.800414	1211.58628	-0.04025	-2.4423E-05	-3.6226	-0.0021982	-3.6628	-0.0022226	606.7979483902486	99.29	1.2795	96.965	96.588	97.867	-2.3253					58	24	3	0	0	0	0.026849	1	8826	8826		32.812	0	1	135490			57793	35235	47653	47698	63358	63358					-0.011054075881020253
TPYINHPIG	9	Unmodified	_TPYINHPIG_					0	0	0		ENST00000494993.1_1_15:91475575-91475770:-|nuORF;nc|ENSG00000184508|Q8N4P3-2|HDDC3;ENSG00000184508|ENST00000394272|HDDC3	ENST00000494993.1_1_15:91475575-91475770:-|nuORF	ENST00000494993.1_1_15:91475575-91475770:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.30072021484375	2	506.266542	1010.51853	-1.2231	-0.00061919	3.6468	0.0018463	2.4238	0.0012271	506.77015008413247	41.243	0.67375	38.263	38.075	38.748	-2.9804					17	12	2	0	0	0	0.027462	1	1859	1859		23.042	0	1	14969			57794	8167	47654	47699	63359	63359					0.013691872717686238
TPYLIVMGAL	10	Unmodified	_TPYLIVMGAL_					0	0	0		ENSG00000280165|ENST00000409204|PCDH20;PCDH20|p.D346Vfs*64|1|0.1|ENSG00000280165|chr13:61413062-61413062|T/-|frameshift_variant	ENSG00000280165|ENST00000409204|PCDH20	ENSG00000280165|ENST00000409204|PCDH20	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.2570190429688	2	539.304278	1076.594	-0.57416	-0.00030965	3.5674	0.0019239	2.9933	0.0016143	539.3061081593527	56.655	1.42	53.361	52.819	54.239	-3.2944					42	27	3	0	0	0	0.026822	1	3668	3668		30.504	0	1	63075			57795	9601	47655	47700	63360	63360					0.05877028407826401
TPYMILVASW	10	Oxidation (M)	_TPYM(Oxidation (M))ILVASW_		TPYM(1)ILVASW		TPYM(49)ILVASW	0	0	1			REV__SLC7A10|p.V320Pfs*36|1|0.04|ENSG00000130876|chr19:33211280-33211283|AGAC/-|frameshift_variant	REV__SLC7A10|p.V320Pfs*36|1|0.04|ENSG00000130876|chr19:33211280-33211283|AGAC/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	598.8089599609375	2	598.804642	1195.59473	3.1513	0.001887	3.8689	0.0023167	7.0202	0.0042037	598.8073615391039	111.73	2.1287	110.63	110.35	112.48	-1.1038					128	42	5	0	0	0	0.53885	1	8168	8168		49.442	12.282	1	1163200	+		57796	18979	47656	47701	63361	63361		436			0.00475823056876834
TPYPPPARPFG	11	Unmodified	_TPYPPPARPFG_					0	0	0			REV__ENSG00000225614|ENST00000565624|ZNF469	REV__ENSG00000225614|ENST00000565624|ZNF469	MULTI-MSMS	OvCa9_classI_Rep2	2	600.3116455078125	2	600.314023	1198.61349	-1.4044	-0.00084307	0.3647	0.00021894	-1.0397	-0.00062413	600.3143237645828	100.13	3.6625	99.3	98.816	102.48	-0.83051					193	73	6	0	0	0	0.67529	1	9149	9149		37.812	4.9991	1	397560	+		57797	23364	47657	47702	63362	63362					0.022131207429310962
TPYPRPVVSR	10	Unmodified	_TPYPRPVVSR_					0	0	0		ENST00000404801.1_1_19:35451891-35454808:-|nuORF	ENST00000404801.1_1_19:35451891-35454808:-|nuORF	ENST00000404801.1_1_19:35451891-35454808:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	586.3356323242188	2	586.332747	1170.65094	-1.5665	-0.00091852	-1.0269	-0.00060213	-2.5935	-0.0015206	586.3321131678058	103.71	1.1515	103.71	103.39	104.54	0					48	26	2	0	0	0	0.41036	1	11582	11582		66.962	10.528	1	6562800			57798	11456	47658	47703	63363	63363					0.07244212008549766
TPYSRTAWKS	10	Unmodified	_TPYSRTAWKS_					0	0	0		ENSG00000119446|ENST00000417201|RBM18	ENSG00000119446|ENST00000417201|RBM18	ENSG00000119446|ENST00000417201|RBM18	MULTI-MSMS	OvCa9_classI_Rep4_	4	598.8084106445312	2	598.806562	1195.59857	0.75656	0.00045303	2.6081	0.0015617	3.3646	0.0020148	598.808152304731	112.14	1.5716	110.62	110.32	111.89	-1.5111					112	30	5	0	0	0	0.64697	1	10385	10385		36.447	0	1	1223900			57799	3364	47659	47704	63364	63364					0.008596288749458836
TQACTGRGHR	10	Unmodified	_TQACTGRGHR_					0	0	0		ENST00000335574.9_2_20:30157062-30157290:+|nuORF	ENST00000335574.9_2_20:30157062-30157290:+|nuORF	ENST00000335574.9_2_20:30157062-30157290:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.81982421875	2	543.764706	1085.51486	0.44685	0.00024298	-1.6517	-0.00089816	-1.2049	-0.00065518	543.7639936381022	74.197	0.11891	74.197	74.095	74.214	0					4	2	2	0	0	0	0.026867	1	7324	7324		35.152	0	1	195650			57800	10500	47660	47705	63365	63365					-0.024478057737496783
TQACTGRGHR	10	Unmodified	_TQACTGRGHR_					0	0	0		ENST00000335574.9_2_20:30157062-30157290:+|nuORF	ENST00000335574.9_2_20:30157062-30157290:+|nuORF	ENST00000335574.9_2_20:30157062-30157290:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.81982421875	2	543.764706	1085.51486	0.49667	0.00027007	2.6057	0.0014169	3.1024	0.001687	543.76763779087	74.267	0.38462	74.267	74.02	74.405	0					14	9	2	0	0	0	0.026867	1	7324	7324		35.152	0	1	477650			57801	10500	47660	47705	63366	63366					-0.024478057737496783
TQAGIVAHI	9	Unmodified	_TQAGIVAHI_					0	0	0		ENSG00000015133|ENST00000389857|CCDC88C;ENST00000553437.1_1_14:91808648-91875041:-|nuORF	ENSG00000015133|ENST00000389857|CCDC88C	ENSG00000015133|ENST00000389857|CCDC88C	MULTI-MSMS	OvCa99_classI_Rep5	1	455.26287841796875	2	455.261259	908.507966	0.68002	0.00030959	-0.31431	-0.00014309	0.36571	0.00016649	455.2610326778906	72.437	0.82901	72.437	72.165	72.994	0					27	20	3	0	0	0	0.22961	1	7058	7058		71.296	17.944	1	1082500			57802	1000	47661	47706	63367	63367					0.050052046173163944
TQAHVQTGI	9	Unmodified	_TQAHVQTGI_					0	0	0		nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L;ENST00000563314.5_1_16:28846803-28847583:+|nuORF	nc|ENSG00000168488|Q8WWM7-8|ATXN2L	nc|ENSG00000168488|Q8WWM7-8|ATXN2L	MULTI-MSMS	OvCa99_classI_Rep5	1	477.7536926269531	2	477.753798	953.493044	-0.036525	-1.745E-05	-0.028478	-1.3606E-05	-0.065003	-3.1056E-05	477.7536775572003	47.154	0.74383	47.154	46.894	47.638	0					34	16	3	0	0	0	0.07097	1	3372	3372		106.68	37.896	1	1122400			57803	15167	47662	47707	63368	63368					0.014437127493238222
TQAIILEIL	9	Unmodified	_TQAIILEIL_					0	0	0		ENST00000447404.6_1_9:125901809-125901905:-|nuORF	ENST00000447404.6_1_9:125901809-125901905:-|nuORF	ENST00000447404.6_1_9:125901809-125901905:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	507.3154602050781	2	507.3157	1012.61685	-0.96298	-0.00048854	0.6153	0.00031215	-0.34769	-0.00017639	507.3158623915197	117.79	1.8845	116.76	116.44	118.32	-1.0324					99	37	4	0	0	0	0.2077	2	8886	8872;8886		75.043	9.5779	1	576140			57804	12006	47663	47708	63369;63370	63370					0.11104370796954299
TQAILNLGFL	10	Unmodified	_TQAILNLGFL_					0	0	0		ENSG00000146477|ENST00000275300|SLC22A3	ENSG00000146477|ENST00000275300|SLC22A3	ENSG00000146477|ENST00000275300|SLC22A3	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3167114257812	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.73378	1	14286	14286		26.693	1.1189	1	202430			57805	5296	47664	47709	63371	63371					0.08222889028479585
TQALKRTVV	9	Unmodified	_TQALKRTVV_					0	0	0		ENST00000561122.1_1_15:57179569-57180061:-|nuORF	ENST00000561122.1_1_15:57179569-57180061:-|nuORF	ENST00000561122.1_1_15:57179569-57180061:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	508.3160095214844	2	508.316566	1014.61858	2.2058	0.0011212	-2.7139	-0.0013795	-0.50811	-0.00025828	508.3151256332638	27.412	0.43318	24.702	24.56	24.994	-2.7097					16	9	3	0	0	0	0.66262	1	474	474		24.519	6.1948	1	21139			57806	13748	47665	47710	63372	63372					0.11185424605560002
TQALLTVRRH	10	Unmodified	_TQALLTVRRH_					0	0	0			REV__nc|ENSG00000143951|O95876-3|WDPCP;REV__ENST00000409835.5_1_2:63587012-63815411:-|nuORF	REV__ENST00000409835.5_1_2:63587012-63815411:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8560180664062	2	597.856921	1193.69929	-2.4902	-0.0014888	1.4044	0.0008396	-1.0859	-0.00064919	597.8575960796461	144.35	4.0594	144.12	142.06	146.12	-0.22696					210	81	4	0	0	0	0.762	1	14580	14580		23.523	0.94304	1	136500	+		57807	19877;25483	47666	47711	63373	63373					0.11018705648439209
TQASKDDLDL	10	Unmodified	_TQASKDDLDL_					0	0	0		nc|ENSG00000213390|Q14CB8-6|ARHGAP19;nc|ENSG00000213390|Q14CB8-3|ARHGAP19;ENSG00000213390|ENST00000358531|ARHGAP19;nc|ENSG00000213390|Q14CB8-2|ARHGAP19;ENST00000487035.1_1_10:98985881-99016222:-|nuORF;ENST00000492211.5_1_10:98985881-99018422:-|nuORF	nc|ENSG00000213390|Q14CB8-6|ARHGAP19	nc|ENSG00000213390|Q14CB8-6|ARHGAP19	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.3021240234375	2	553.272218	1104.52988	-0.40953	-0.00022658	-2.0524	-0.0011356	-2.462	-0.0013621	553.2709469862967	103.86	0.36782	101.74	101.48	101.85	-2.1192					10	6	2	0	0	0	0.026916	1	9375	9375		36.318	0	1	12146			57808	9126	47667	47712	63374	63374					-0.018200802154069606
TQCLFPLTL	9	Unmodified	_TQCLFPLTL_					0	0	0		ENST00000446198.5_1_7:131188411-131188615:-|nuORF	ENST00000446198.5_1_7:131188411-131188615:-|nuORF	ENST00000446198.5_1_7:131188411-131188615:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.3243408203125	2	518.280803	1034.54705	0.10054	5.2109E-05	-3.3966	-0.0017604	-3.2961	-0.0017083	518.2787416146472	83.903	1.0811	81.24	81.022	82.103	-2.6629					48	22	3	0	0	0	0.027353	1	7013	7013		82.241	15.811	1	477600			57809	11986	47668	47713	63375	63375					0.031161688566726298
TQCPLVLVV	9	Unmodified	_TQCPLVLVV_					0	0	0			REV__ENST00000514602.1_1_4:8594578-8602781:+|nuORF	REV__ENST00000514602.1_1_4:8594578-8602781:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.8141174316406	2	486.283346	970.552139	1.5162	0.00073733	-3.173	-0.001543	-1.6568	-0.00080566	486.2817388992463	148.5	0.54227	148.5	148.23	148.77	0					17	10	2	0	0	0	0.027455	1	17379	17379		51.335	1.3109	1	116200	+		57810	26988	47669	47714	63376	63376					0.06568472719300189
TQDNLDDKL	9	Unmodified	_TQDNLDDKL_					0	0	0		nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1	nc|ENSG00000165219|Q14C86-5|GAPVD1	nc|ENSG00000165219|Q14C86-5|GAPVD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.7861938476562	2	531.259111	1060.50367	-0.68874	-0.0003659	-0.14221	-7.5552E-05	-0.83095	-0.00044145	531.2590188764436	61.066	0.78071	57.636	57.444	58.225	-3.43					22	15	2	0	0	0	0.027462	1	4144	4144		24.519	6.2571	1	51478			57811	6537	47670	47715	63377	63377					-0.02416349386908223
TQDSLWGAD	9	Unmodified	_TQDSLWGAD_					0	0	0			REV__nc|ENSG00000132692|Q96GW7-2|BCAN	REV__nc|ENSG00000132692|Q96GW7-2|BCAN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.2905578613281	2	496.719621	991.42469	-0.77063	-0.00038279	-4.2365	-0.0021044	-5.0071	-0.0024871	496.71751348359237	82.1	0.53149	79.417	79.251	79.782	-2.6829					15	10	2	0	0	0	0.027455	1	6803	6803		19.997	0	1	21185	+		57812	19097	47671	47716	63378	63378					-0.07136576621178392
TQDVISYPLLL	11	Unmodified	_TQDVISYPLLL_					0	0	0		ENST00000583370.5_1_17:25877599-25885155:+|nuORF	ENST00000583370.5_1_17:25877599-25885155:+|nuORF	ENST00000583370.5_1_17:25877599-25885155:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	421.23883056640625	3	421.239461	1260.69655	1.8437	0.00077662	-3.727	-0.00157	-1.8834	-0.00079335	421.2378307457594	65.475	1.0678	62.529	62.3	63.368	-2.9459					44	20	3	0	0	0	0.68059	1	2624	2624		36.318	0	1	110760			57813	14012	47672	47717	63379	63379					0.07663392680274228
TQEDLAADVN	10	Unmodified	_TQEDLAADVN_					0	0	0		tr|A0A553SNK8|A0A553SNK8_NIACIXREfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_24555PE=4SV=1	tr|A0A553SNK8|A0A553SNK8_NIACIXREfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_24555PE=4SV=1	tr|A0A553SNK8|A0A553SNK8_NIACIXREfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_24555PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.2804565429688	2	538.248743	1074.48293	2.3534	0.0012667	-1.5266	-0.00082168	0.82686	0.00044506	538.2480621486303	106.49	0.39831	106.49	106.23	106.63	0					14	8	2	0	0	0	0.026803	1	11982	11982		26.063	0	1	128790			57814	33932	47673	47718	63380	63380					-0.05132939766576783
TQEDWLVSVL	10	Unmodified	_TQEDWLVSVL_					0	0	0		ENST00000488118.6_1_10:111637546-111648351:-|nuORF;nc|ENSG00000108039|Q9NQW7-2|XPNPEP1;nc|ENSG00000108039|Q9NQW7|XPNPEP1;nc|ENSG00000108039|Q9NQW7-4|XPNPEP1;ENSG00000108039|ENST00000502935|XPNPEP1	ENST00000488118.6_1_10:111637546-111648351:-|nuORF	ENST00000488118.6_1_10:111637546-111648351:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.2869262695312	2	595.308603	1188.60265	0.66978	0.00039873	-3.2003	-0.0019052	-2.5305	-0.0015064	595.3090514257298	72.228	0.40576	72.228	72.045	72.45	0					12	9	2	0	0	0	0.026931	1	7003	7003		23.523	0	1	471430			57815	2635	47674	47719	63381	63381					0.01589673577996109
TQEIITKL	8	Unmodified	_TQEIITKL_					0	0	0			REV__tr|A0A553SP49|A0A553SP49_NIACIProbabledual-specificityRNAmethyltransferaseRlmNOS=NialliacirculansOX=1397GN=rlmNPE=3SV=1	REV__tr|A0A553SP49|A0A553SP49_NIACIProbabledual-specificityRNAmethyltransferaseRlmNOS=NialliacirculansOX=1397GN=rlmNPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.2831726074219	2	473.2844	944.554247	2.9124	0.0013784	-3.1343	-0.0014834	-0.22192	-0.00010503	473.2826945129247	136.88	1.1673	135.34	135.03	136.2	-1.5437					38	23	3	0	0	0	0.59904	1	13302	13302		64.207	7.4862	1	65667	+		57816	30491	47675	47720	63382	63382					0.07975224728750163
TQELFEEIKI	10	Unmodified	_TQELFEEIKI_					0	0	0			REV__ENSG00000155962|ENST00000369449|CLIC2;REV__ENST00000465553.5_1_X:154508114-154563754:-|nuORF	REV__ENST00000465553.5_1_X:154508114-154563754:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	625.3359985351562	2	625.337361	1248.66017	1.3781	0.00086175	0.026182	1.6373E-05	1.4042	0.00087813	625.3369407958311	123.1	0.7008	123.1	122.81	123.51	0					44	14	4	0	0	0	0.55109	1	14176	14176		47.96	0	1	852170	+		57817	20451;26170	47676	47721	63383	63383					0.045785157835553036
TQELKFSEV	9	Unmodified	_TQELKFSEV_					0	0	0			REV__nc|ENSG00000112419|O75167-5|PHACTR2	REV__nc|ENSG00000112419|O75167-5|PHACTR2	MULTI-SECPEP	OvCa9_classI_Rep2	2	540.7625732421875	2	540.782222	1079.54989	-0.88787	-0.00048015	-4.2454	-0.0022958	-5.1332	-0.002776	540.7787226053431	77.805	0.15766	76.016	75.884	76.042	-1.7894					4	2	2	0	0	0	0.027462	1	6480	6480		45.972	19.279	1	4836.3	+		57818	18100	47677	47722	63384	63384					0.013297155152031337
TQELLVILPI	10	Unmodified	_TQELLVILPI_					0	0	0		ENST00000438412.5_1_6:30262511-30262622:-|nuORF	ENST00000438412.5_1_6:30262511-30262622:-|nuORF	ENST00000438412.5_1_6:30262511-30262622:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	569.8085327148438	2	569.857732	1137.70091	-1.2214	-0.00069605	-1.3817	-0.00078739	-2.6032	-0.0014834	569.8567731374519	48.213	0.54659	45.504	45.133	45.679	-2.7097					12	10	2	0	0	0	0.026782	1	2946	2946		45.972	13.16	1	10148			57819	11898	47678	47723	63385	63385					0.1375690189386205
TQENLGRVK	9	Unmodified	_TQENLGRVK_					0	0	0		UBE2O|p.E1121Rfs*4|1|0.12|ENSG00000175931|chr17:76391461-76391462|-/G|frameshift_variant;ENSG00000175931|ENST00000319380|UBE2O	UBE2O|p.E1121Rfs*4|1|0.12|ENSG00000175931|chr17:76391461-76391462|-/G|frameshift_variant	UBE2O|p.E1121Rfs*4|1|0.12|ENSG00000175931|chr17:76391461-76391462|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.8146362304688	2	522.793455	1043.57236	-0.013344	-6.9761E-06	3.8045	0.001989	3.7912	0.001982	522.7954179619057	111.68	0.7375	110.17	109.84	110.58	-1.5111					29	13	4	0	0	0	0.02744	1	10329	10329		62.107	3.3255	1	45769			57820	7572	47679	47724	63386	63386					0.05231359703475391
TQESDDPQALL	11	Unmodified	_TQESDDPQALL_					0	0	0			REV__STK36|p.E760Sfs*19|1|0.2|ENSG00000163482|chr2:218693919-218693934|TCTACTGAAGTGACAC/-|frameshift_variant	REV__STK36|p.E760Sfs*19|1|0.2|ENSG00000163482|chr2:218693919-218693934|TCTACTGAAGTGACAC/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	608.7899780273438	2	608.788232	1215.56191	0.77672	0.00047286	2.7168	0.001654	3.4935	0.0021268	608.7896927819082	135.16	1.3782	134.05	133.72	135.1	-1.1076					76	27	4	0	0	0	0.52474	1	10943	10943		51.528	1.9917	1	189180	+		57821	20841	47680	47725	63387	63387					-0.037247125322892316
TQFCLLDEL	9	Unmodified	_TQFCLLDEL_					0	0	0			REV__ENSG00000172680|ENST00000311923|MOS	REV__ENSG00000172680|ENST00000311923|MOS	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.2907104492188	2	541.26535	1080.51615	0.54527	0.00029514	-1.5453	-0.0008364	-0.99999	-0.00054126	541.2642662198123	86.429	1.1861	83.802	83.363	84.549	-2.6269					54	23	3	0	0	0	0.027462	1	7329	7329		29.15	8.2026	1	123290	+		57822	21718	47681	47726	63388	63388					-0.020890292482363293
TQFEIDACL	9	Unmodified	_TQFEIDACL_					0	0	0			REV__nc|ENSG00000079156|Q9BZF3-6|OSBPL6	REV__nc|ENSG00000079156|Q9BZF3-6|OSBPL6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.3033447265625	2	520.241875	1038.4692	-0.75303	-0.00039176	4.0058	0.002084	3.2527	0.0016922	520.2438016508211	65.363	2.2883	61.878	61.456	63.744	-3.4854					84	46	3	0	0	0	0.027462	1	4849	4849		11.511	0	1	243130	+		57823	17036	47682	47727	63389	63389					-0.048498887993673634
TQFLKKQF	8	Unmodified	_TQFLKKQF_					0	0	0			REV__ENSG00000144554|ENST00000675286|FANCD2	REV__ENSG00000144554|ENST00000675286|FANCD2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.7781982421875	2	520.300384	1038.58622	-0.41154	-0.00021412	4.3227	0.0022491	3.9111	0.002035	520.3021045786609	62.018	0.97374	58.561	58.382	59.356	-3.4577					25	19	2	0	0	0	0.028476	1	4341	4341		35.618	0	1	146100	+		57824	19918	47683	47728	63390	63390					0.06846637202556849
TQFPFFFF	8	Unmodified	_TQFPFFFF_					0	0	0			REV__chr1:206093413-206097733|109|11.83|0.01|10.57|+|2|TE_info:AluSg7,AluSg7_dup601,Alu,SINE,donor,-,206093265,206093413|None,RHEX|1	REV__chr1:206093413-206097733|109|11.83|0.01|10.57|+|2|TE_info:AluSg7,AluSg7_dup601,Alu,SINE,donor,-,206093265,206093413|None,RHEX|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	539.7998046875	2	540.763104	1079.51165	-1.2789	-0.00069156	-2.1869	-0.0011826	-3.4658	-0.0018742	540.7610895889403	65.543	0.77734	62.058	61.791	62.569	-3.4854					21	15	2	0	0	0	0.028476	1	4700	4700		31.955	0.42505	1	37349	+		57825	15817	47684	47729	63391	63391					-0.024921256088191512
TQFPFYLLT	9	Unmodified	_TQFPFYLLT_					0	0	0		ENST00000260323.15_1_15:54919629-54919713:+|nuORF	ENST00000260323.15_1_15:54919629-54919713:+|nuORF	ENST00000260323.15_1_15:54919629-54919713:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.3259887695312	2	565.30005	1128.58555	0.70797	0.00040021	-2.5853	-0.0014615	-1.8774	-0.0010613	565.2982228965934	103.18	0.93892	100.98	100.73	101.67	-2.1994					28	12	3	0	0	0	0.027426	1	9354	9354		66.429	15.094	1	84929			57826	9849	47685	47730	63392	63392					0.026397977628448643
TQFVTYRLDV	10	Unmodified	_TQFVTYRLDV_					0	0	0			REV__nc|ENSG00000138030|P50053-2|KHK	REV__nc|ENSG00000138030|P50053-2|KHK	MULTI-MSMS	OvCa99_classI_Rep5	1	621.3323364257812	2	621.32987	1240.64519	1.844	0.0011457	0.34345	0.0002134	2.1874	0.0013591	621.3298233918615	115.55	0.70416	115.55	115.3	116	0					36	14	4	0	0	0	0.39172	2	13201	13201;13207		69.628	7.5202	1	1211700	+		57827	28880	47686	47731	63393;63394	63393					0.03449068706231628
TQFVTYRLDV	10	Unmodified	_TQFVTYRLDV_					0	0	0			REV__nc|ENSG00000138030|P50053-2|KHK	REV__nc|ENSG00000138030|P50053-2|KHK	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	621.32987	1240.64519	1.844	0.0011457	0.34345	0.0002134	2.1874	0.0013591	621.3298233918615	115.55	0.70416	115.55	115.3	116	0	0	0	NaN	69.628	36	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1211700	+		57828	28880	47686	47731							0.03449068706231628
TQGKVVDIIQ	10	Unmodified	_TQGKVVDIIQ_					0	0	0		nc|ENSG00000170054|Q86WD7-5|SERPINA9;nc|ENSG00000170054|Q86WD7-4|SERPINA9;nc|ENSG00000170054|Q86WD7-2|SERPINA9;nc|ENSG00000170054|Q86WD7-6|SERPINA9;ENSG00000170054|ENST00000674397|SERPINA9;nc|ENSG00000170054|Q86WD7-7|SERPINA9	nc|ENSG00000170054|Q86WD7-5|SERPINA9	nc|ENSG00000170054|Q86WD7-5|SERPINA9	MULTI-MSMS	OvCa99_classI_Rep5	1	550.8168334960938	2	550.819138	1099.62372	-0.40023	-0.00022046	-2.4497	-0.0013493	-2.8499	-0.0015698	550.8178523914296	23.016	0.98193	23.016	22.854	23.836	0					54	19	5	0	0	0	0.79213	1	345	345		19.997	1.7347	1	3720400			57829	7070	47687	47732	63395	63395					0.07789683677515313
TQGLVKPLLLA	11	Unmodified	_TQGLVKPLLLA_					0	0	0		ENST00000332598.6_1_5:177022592-177022790:+|nuORF	ENST00000332598.6_1_5:177022592-177022790:+|nuORF	ENST00000332598.6_1_5:177022592-177022790:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.7799072265625	2	576.871174	1151.72779	1.7517	0.0010105	0.40117	0.00023142	2.1528	0.0012419	576.8714058586726	120.31	0.26466	120.31	120.09	120.36	0					9	6	2	0	0	0	0.026099	1	13800	13800		9.1829	0	1	257670			57830	10459	47688	47733	63396	63396					0.15800010505040518
TQGSSVTK	8	Unmodified	_TQGSSVTK_					0	0	0		nc|ENSG00000158636|Q7Z589-6|EMSY;nc|ENSG00000158636|Q7Z589|EMSY;nc|ENSG00000158636|Q7Z589-5|EMSY;nc|ENSG00000158636|Q7Z589-4|EMSY;ENSG00000158636|ENST00000695367|EMSY	nc|ENSG00000158636|Q7Z589-6|EMSY	nc|ENSG00000158636|Q7Z589-6|EMSY	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.88787841796875	2	404.213975	806.413397	1.3159	0.00053191	0.25585	0.00010342	1.5718	0.00063533	404.21389458998175	30.955	0.43717	30.955	30.781	31.218	0					11	8	2	0	0	0	0.028476	1	1216	1216		27.882	6.9353	1	79247			57831	5966	47689	47734	63397	63397					0.002446460753503743
TQGVRAPE	8	Unmodified	_TQGVRAPE_					0	0	0		ENSG00000204131|ENST00000633930|NHSL2	ENSG00000204131|ENST00000633930|NHSL2	ENSG00000204131|ENST00000633930|NHSL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	429.7102966308594	2	429.227417	856.44028	-0.26154	-0.00011226	-1.1166	-0.00047927	-1.3781	-0.00059153	429.2270725337133	53.668	1.3302	50.42	50.058	51.388	-3.2474					39	25	3	0	0	0	0.028476	1	3249	3249		15.642	0	1	28360			57832	8950	47690	47735	63398	63398					0.0063175468651479605
TQHAVGIVV	9	Unmodified	_TQHAVGIVV_					0	0	0		ENST00000397467.2_1_3:1947466-1947595:+|nuORF;ENST00000493466.1_1_4:37823021-37823243:+|nuORF;ENST00000483765.5_1_13:27827977-27830662:+|nuORF;ENST00000469899.2_1_12:66431104-66431491:+|nuORF;ENSG00000122026|ENST00000311549|RPL21	ENST00000397467.2_1_3:1947466-1947595:+|nuORF	ENST00000397467.2_1_3:1947466-1947595:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	462.27081298828125	2	462.269084	922.523616	0.061709	2.8526E-05	0.36101	0.00016688	0.42272	0.00019541	462.26912217108224	71.69	1.1423	71.69	71.308	72.45	0					64	27	4	0	0	0	0.27001	1	6959	6959		66.429	2.222	1	5828800			57833	3513	47691	47736	63399	63399					0.0592549113438281
TQHHFAFQN	9	Unmodified	_TQHHFAFQN_					0	0	0		nc|ENSG00000156194|O14830-2|PPEF2;ENSG00000156194|ENST00000286719|PPEF2	nc|ENSG00000156194|O14830-2|PPEF2	nc|ENSG00000156194|O14830-2|PPEF2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.7896728515625	2	565.262322	1128.51009	-0.018052	-1.0204E-05	0.95032	0.00053718	0.93227	0.00052697	565.2620871166039	95.782	0.40472	93.356	93.154	93.559	-2.4256					12	7	2	0	0	0	0.027462	1	8435	8435		35.152	4.8343	1	22378			57834	5825	47692	47737	63400	63400					-0.04902366644864742
TQHLKPVLL	9	Unmodified	_TQHLKPVLL_					0	0	0		ENST00000391973.6_1_2:242291796-242291901:+|nuORF	ENST00000391973.6_1_2:242291796-242291901:+|nuORF	ENST00000391973.6_1_2:242291796-242291901:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2882080078125	2	524.829309	1047.64407	0.16407	8.6107E-05	-3.9803	-0.002089	-3.8162	-0.0020028	524.8271106271505	161.44	1.2185	161.44	161.06	162.28	0					81	23	5	0	0	0	0.027462	1	18904	18904		24.519	9.8551	1	1526900			57835	11210	47693	47738	63401	63401					0.12214899127980061
TQHSQSTN	8	Unmodified	_TQHSQSTN_					0	0	0			REV__nc|ENSG00000173744|P52594-2|AGFG1	REV__nc|ENSG00000173744|P52594-2|AGFG1	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.79766845703125	2	451.701763	901.388973	0.046862	2.1168E-05	-3.2992	-0.0014903	-3.2524	-0.0014691	451.70024507816254	41.172	0.18093	41.172	41.059	41.24	0					5	3	2	0	0	0	0.028476	1	2557	2557		62.107	14.45	1	20684	+		57836	21798	47694	47739	63402	63402					-0.06566614078178645
TQIKQAIVF	9	Unmodified	_TQIKQAIVF_					0	0	0			REV__ENST00000488453.1_1_1:38483328-38489297:+|nuORF	REV__ENST00000488453.1_1_1:38483328-38489297:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7619018554688	2	524.313492	1046.61243	-1.4565	-0.00076367	-0.1953	-0.0001024	-1.6518	-0.00086607	524.3137261760206	63.893	0.40297	63.893	63.648	64.051	0					14	9	2	0	0	0	0.027462	1	5785	5785		30.504	4.9296	1	312770	+		57837	22366	47695	47740	63403	63403					0.09098906374038052
TQILMQQTL	9	Unmodified	_TQILMQQTL_					0	0	0		SLC9A8|p.S492Rfs*44|1|0.46|ENSG00000197818|chr20:49884051-49884051|C/-|frameshift_variant;ENSG00000197818|ENST00000361573|SLC9A8;nc|ENSG00000197818|Q9Y2E8-2|SLC9A8	SLC9A8|p.S492Rfs*44|1|0.46|ENSG00000197818|chr20:49884051-49884051|C/-|frameshift_variant	SLC9A8|p.S492Rfs*44|1|0.46|ENSG00000197818|chr20:49884051-49884051|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.8267822265625	2	538.294442	1074.57433	0.061533	3.3123E-05	-2.2569	-0.0012149	-2.1953	-0.0011817	538.2926135070342	94.1	1.3205	92.204	91.693	93.014	-1.8956					106	25	7	0	0	0	0.027462	1	6002	6002		28.081	9.8194	1	515500			57838	8752	47696	47741	63404	63404					0.040026523970709604
TQIMATNT	8	Unmodified	_TQIMATNT_					0	0	0			REV__ENST00000468313.5_1_17:39657932-39661743:-|nuORF	REV__ENST00000468313.5_1_17:39657932-39661743:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	439.75244140625	2	440.21566	878.416767	-0.34735	-0.00015291	-3.3196	-0.0014613	-3.6669	-0.0016142	440.2142807308679	104.81	0.86039	102.69	102.53	103.39	-2.1192					21	16	2	0	0	0	0.028476	1	9496	9496		19.997	0	1	11955	+	+	57839	16179	47697	47742	63405	63405					-0.027304271423076898
TQKFFPAPLP	10	Unmodified	_TQKFFPAPLP_					0	0	0			REV__nc|ENSG00000272391|A8CG34|POM121C	REV__nc|ENSG00000272391|A8CG34|POM121C	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.328125	2	573.321317	1144.62808	1.8667	0.0010702	0.051707	2.9645E-05	1.9184	0.0010999	573.3213568901505	120.29	1.1009	120.29	120	121.1	0					23	14	3	0	0	0	0.026939	1	13786	13786		11.511	0	1	1252100	+		57840	29190	47698	47743	63406	63406					0.06155192891083061
TQKFSHEEI	9	Unmodified	_TQKFSHEEI_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA	nc|ENSG00000149925|P04075|ALDOA	nc|ENSG00000149925|P04075|ALDOA	MULTI-MSMS	OvCa99_classI_Rep5	1	559.77783203125	2	559.77747	1117.54039	-0.69079	-0.00038669	0.667	0.00037337	-0.023792	-1.3318E-05	559.7778341585953	43.712	0.73666	43.712	43.478	44.215	0					59	16	5	0	0	0	0.055627	2	2898	2898;2922		115.49	30.579	1	1688400			57841	5491	47699	47744	63407;63408	63407					-0.013680527703400003
TQKIGVHAFQ	10	Unmodified	_TQKIGVHAFQ_					0	0	0		ENSG00000187608|ENST00000649529|ISG15	ENSG00000187608|ENST00000649529|ISG15	ENSG00000187608|ENST00000649529|ISG15	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.8099975585938	2	564.811648	1127.60874	-0.32119	-0.00018141	-1.7221	-0.00097268	-2.0433	-0.0011541	564.8105266478774	146.61	1.7739	145.17	144.75	146.53	-1.4357					75	34	3	0	0	0	0.62299	1	14405	14405		39.253	10.103	1	178590			57842	8418	47700	47745	63409	63409					0.05004236600166223
TQKIKWVVAA	10	Unmodified	_TQKIKWVVAA_					0	0	0			REV__ENST00000424738.1_1_10:117226695-117357303:+|nuORF	REV__ENST00000424738.1_1_10:117226695-117357303:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.8477172851562	2	572.347866	1142.68118	-0.75906	-0.00043445	4.3867	0.0025107	3.6277	0.0020763	572.3503674782096	37.775	0.49305	37.775	37.576	38.069	0					18	10	3	0	0	0	0.02717	1	2094	2094		12.207	0	1	239910	+		57843	17847	47701	47746	63410	63410					0.11554570673752096
TQKIVEEKV	9	Unmodified	_TQKIVEEKV_					0	0	0		ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	ENSG00000198887|ENST00000361138|SMC5	MULTI-MSMS	OvCa99_classI_Rep5	1	537.3143310546875	2	537.313689	1072.61282	-0.49084	-0.00026374	-0.21933	-0.00011785	-0.71017	-0.00038159	537.3135452822276	42.506	0.68421	42.506	42.242	42.926	0					34	15	3	0	0	0	0.19314	1	2737	2737		77.533	3.3683	1	526910			57844	8900	47702	47747	63411	63411					0.07942281303235177
TQKKQLLVS	9	Unmodified	_TQKKQLLVS_					0	0	0		ENST00000522879.1_1_5:171491486-171509389:-|nuORF	ENST00000522879.1_1_5:171491486-171509389:-|nuORF	ENST00000522879.1_1_5:171491486-171509389:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	522.8252563476562	2	522.824224	1043.63389	-0.61715	-0.00032266	-0.12179	-6.3677E-05	-0.73894	-0.00038634	522.8241473129543	81.355	1.6752	79.033	78.337	80.012	-2.3226					150	32	6	0	0	0	0.28934	1	4532	4532		64.207	4.089	1	2046900			57845	13143	47703	47748	63412	63412					0.1138229140274234
TQKLIGENI	9	Unmodified	_TQKLIGENI_					0	0	0			REV__tr|A0A553STF8|A0A553STF8_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04870PE=4SV=1	REV__tr|A0A553STF8|A0A553STF8_NIACITetR/AcrRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04870PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.3299255371094	2	508.292756	1014.57096	-0.4928	-0.00025049	0.30451	0.00015478	-0.18829	-9.5709E-05	508.29277008934264	50.738	0.44278	50.738	50.421	50.863	0					15	9	2	0	0	0	0.027462	1	3864	3864		35.618	7.736	1	673550	+		57846	30956	47704	47749	63413	63413					0.06425725614712974
TQKLLEDPVL	10	Unmodified	_TQKLLEDPVL_					0	0	0			REV__nc|ENSG00000086015|Q6P0Q8-2|MAST2	REV__nc|ENSG00000086015|Q6P0Q8-2|MAST2	MULTI-MSMS	OvCa9_classI_Rep2	2	578.333740234375	2	578.334621	1154.65469	-1.7662	-0.0010215	0.30216	0.00017475	-1.464	-0.0008467	578.334723077492	117.67	0.94284	117.54	117.21	118.15	-0.13145					50	18	3	0	0	0	0.61634	1	11275	11275		40.058	8.4239	1	113330	+		57847	17145	47705	47750	63414	63414					0.08354836991748016
TQKNLLTL	8	Unmodified	_TQKNLLTL_					0	0	0			REV__tr|A0A553SUN2|A0A553SUN2_NIACIAminoacidpermeaseOS=NialliacirculansOX=1397GN=CEQ21_02760PE=4SV=1	REV__tr|A0A553SUN2|A0A553SUN2_NIACIAminoacidpermeaseOS=NialliacirculansOX=1397GN=CEQ21_02760PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	466.2597961425781	2	465.784567	929.554582	2.2923	0.0010677	-0.22315	-0.00010394	2.0691	0.00096376	465.7843116504972	76.332	0.40285	76.332	76.115	76.518	0					20	9	3	0	0	0	0.028476	1	7634	7634		27.882	6.9353	1	1132100	+		57848	31099	47706	47751	63415	63415					0.08698644448600135
TQKTKVQLV	9	Unmodified	_TQKTKVQLV_					0	0	0		tr|A0A7D6ZH62|A0A7D6ZH62_9CLOTPTSsugartransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_01675PE=4SV=1	tr|A0A7D6ZH62|A0A7D6ZH62_9CLOTPTSsugartransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_01675PE=4SV=1	tr|A0A7D6ZH62|A0A7D6ZH62_9CLOTPTSsugartransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_01675PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.29833984375	2	522.824224	1043.63389	-0.66113	-0.00034566	0.77942	0.0004075	0.11829	6.1843E-05	522.8245381562756	61.159	0.21665	61.159	61.028	61.245	0					6	4	2	0	0	0	0.027462	1	5382	5382		34.173	3.6689	1	67527			57849	35566	47707	47752	63416	63416					0.1138229140274234
TQLCEITET	9	Unmodified	_TQLCEITET_					0	0	0			REV__ENSG00000140743|ENST00000268383|CDR2	REV__ENSG00000140743|ENST00000268383|CDR2	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.7919921875	2	519.244615	1036.47468	0.54429	0.00028262	1.4653	0.00076086	2.0096	0.0010435	519.245363349294	86.707	1.2371	85.276	84.803	86.04	-1.4311					33	23	2	0	0	0	0.027433	1	7500	7500		26.693	0	1	39382	+		57850	19698	47708	47753	63417	63417					-0.042102100075453563
TQLLERIL	8	Unmodified	_TQLLERIL_					0	0	0			REV__ENST00000287396.2_1_8:124515615-124544254:-|nuORF	REV__ENST00000287396.2_1_8:124515615-124544254:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.2873229980469	2	493.305667	984.596781	0.59453	0.00029328	-4.1227	-0.0020338	-3.5282	-0.0017405	493.3036884084958	87.002	0.89041	84.375	83.908	84.799	-2.6269					42	17	3	0	0	0	0.028476	1	7426	7426		37.812	0	1	122310	+		57851	20496	47709	47754	63418	63418					0.10386619857001733
TQLLLPVSI	9	Unmodified	_TQLLLPVSI_					0	0	0		chr19:17942845-17943173|175|15.76|0.58|4.76|+|0|CCDC124,None|1	chr19:17942845-17943173|175|15.76|0.58|4.76|+|0|CCDC124,None|1	chr19:17942845-17943173|175|15.76|0.58|4.76|+|0|CCDC124,None|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.3042907714844	2	492.310418	982.606283	0.27927	0.00013749	-0.5003	-0.0002463	-0.22104	-0.00010882	492.31007389638813	105.66	0.44888	105.22	104.95	105.4	-0.43642					14	8	2	0	0	0	0.027462	1	9787	9787		10.265	0	1	125020			57852	406	47710	47755	63419	63419					0.11428388142508084
TQLNIPARI	9	Unmodified	_TQLNIPARI_					0	0	0		ENSG00000184939|ENST00000563169|ZFP90;ENST00000571720.2_1_16:68596924-68598598:+|nuORF	ENSG00000184939|ENST00000563169|ZFP90	ENSG00000184939|ENST00000563169|ZFP90	MULTI-MSMS	OvCa9_classI_Rep3	3	513.30859375	2	513.308741	1024.60293	-0.62059	-0.00031855	0.45292	0.00023249	-0.16767	-8.6064E-05	513.3090013877434	77.124	2.0931	74.753	74.191	76.284	-2.3715					86	40	5	0	0	0	0.21231	1	4028	4028		74.255	0.28031	1	953400			57853	8205	47711	47756	63420	63420					0.09161138088529697
TQLPQSMKI	9	Unmodified	_TQLPQSMKI_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	OvCa99_classI_Rep5	1	523.2907104492188	2	523.289159	1044.56377	0.1686	8.8228E-05	1.437	0.00075195	1.6056	0.00084017	523.2898193051864	81.306	0.8653	81.306	80.91	81.776	0					66	20	4	0	0	0	0.047422	1	8380	8380		120.31	39.851	1	16867000			57854	2130	47712	47757	63421	63421					0.043266697426361134
TQLPQSMKI	9	Unmodified	_TQLPQSMKI_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	523.289159	1044.56377	0.15657	8.1933E-05	-4.1279	-0.0021601	-3.9713	-0.0020782	523.2867498717452	84.247	0.18111	81.584	81.504	81.685	-2.6629	0.13932	-0.0052615	NaN	120.31	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29198			57855	2130	47712	47757							0.043266697426361134
TQLQCGWPS	9	Unmodified	_TQLQCGWPS_					0	0	0			REV__ENST00000484772.1_1_1:27272107-27272173:+|nuORF	REV__ENST00000484772.1_1_1:27272107-27272173:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.293212890625	2	510.234384	1018.45422	-0.39942	-0.0002038	-0.11713	-5.9765E-05	-0.51656	-0.00026356	510.2342001330159	79.269	0.52145	76.517	76.322	76.844	-2.7514					14	10	2	0	0	0	0.027462	1	6459	6459		19.997	10.814	1	23295	+		57856	26551	47713	47758	63422	63422					-0.054273358766863566
TQLQCGWPS	9	Unmodified	_TQLQCGWPS_					0	0	0			REV__ENST00000484772.1_1_1:27272107-27272173:+|nuORF	REV__ENST00000484772.1_1_1:27272107-27272173:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	510.234384	1018.45422	-0.1796	-9.1636E-05	0.13978	7.1318E-05	-0.03982	-2.0318E-05	510.23479586272464	78.242	0.55791	76.502	76.249	76.807	-1.7398	-0.0073095	0.00022233	NaN	9.1829	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7847.9	+		57857	26551	47713	47758							-0.054273358766863566
TQLRNLRAVQ	10	Unmodified	_TQLRNLRAVQ_					0	0	0			REV__nc|ENSG00000148498|Q8TEW0-7|PARD3	REV__nc|ENSG00000148498|Q8TEW0-7|PARD3	MULTI-MSMS	OvCa9_classI_Rep4_	4	400.24017333984375	3	400.238678	1197.6942	2.9757	0.001191	0.53114	0.00021258	3.5068	0.0014036	400.2388154241701	34.481	0.90261	31.693	31.498	32.401	-2.7881					37	17	3	0	0	0	0.67987	1	1019	1019		32.751	3.1998	1	79502	+		57858	20115	47714	47759	63423	63423					0.10326401785823691
TQLRPTALLL	10	Unmodified	_TQLRPTALLL_					0	0	0			REV__ENST00000392551.6_1_2:175347643-175351744:-|nuORF	REV__ENST00000392551.6_1_2:175347643-175351744:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	563.353271484375	2	563.353148	1124.69174	1.3942	0.00078545	-0.18057	-0.00010173	1.2137	0.00068372	563.3529214369328	62.001	0.76881	58.933	58.707	59.476	-3.0685					33	18	3	0	0	0	0.83261	1	2223	2223		14.865	3.3539	1	22286	+		57859	24190	47715	47760	63424	63424					0.13438553328182934
TQLWDVPS	8	Unmodified	_TQLWDVPS_					0	0	0		ENST00000459790.1_1_9:12694295-12694361:+|nuORF	ENST00000459790.1_1_9:12694295-12694361:+|nuORF	ENST00000459790.1_1_9:12694295-12694361:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.2768859863281	2	473.23745	944.460347	2.0126	0.00095245	-2.012	-0.00095215	0.00062817	2.9727E-07	473.23636614207356	85.831	0.99237	83.185	82.848	83.841	-2.6463					31	19	2	0	0	0	0.028476	1	7292	7292		37.159	0	1	37427			57860	12141	47716	47761	63425	63425					-0.014104943735219422
TQNELRPCL	9	Unmodified	_TQNELRPCL_					0	0	0		ENSG00000138646|ENST00000264350|HERC5	ENSG00000138646|ENST00000264350|HERC5	ENSG00000138646|ENST00000264350|HERC5	MULTI-MSMS	OvCa99_classI_Rep5	1	537.275390625	2	537.274041	1072.53353	2.916	0.0015667	0.13705	7.3634E-05	3.0531	0.0016403	537.2739698428175	99.099	0.44464	99.099	98.916	99.361	0					17	10	2	0	0	0	0.44568	1	10946	10946		47.657	0	1	1409300			57861	4704	47717	47762	63426	63426					0.00016311077433783794
TQNFLIQKI	9	Unmodified	_TQNFLIQKI_					0	0	0		ENSG00000142867|ENST00000648566|BCL10	ENSG00000142867|ENST00000648566|BCL10	ENSG00000142867|ENST00000648566|BCL10	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.3519287109375	2	552.824224	1103.63389	2.0235	0.0011186	0.14814	8.1894E-05	2.1716	0.0012005	552.8242200642073	97.973	0.94515	97.973	97.78	98.725	0					72	21	4	0	0	0	0.02744	1	10786	10786		44.377	1.5129	1	4527300			57862	4998	47718	47763	63427	63427					0.08622291402753035
TQNGSYGTL	9	Unmodified	_TQNGSYGTL_					0	0	0		tr|A0A553SJH1|A0A553SJH1_NIACIMethionineABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16680PE=4SV=1	tr|A0A553SJH1|A0A553SJH1_NIACIMethionineABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16680PE=4SV=1	tr|A0A553SJH1|A0A553SJH1_NIACIMethionineABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_16680PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.21087646484375	2	470.722164	939.429775	0.84112	0.00039594	3.1232	0.0014702	3.9643	0.0018661	470.72342887615065	112.67	0.54971	111.16	110.84	111.39	-1.5111					13	10	2	0	0	0	0.027455	1	10440	10440		34.173	0	1	16050			57863	33504	47719	47764	63428	63428					-0.04236272758555515
TQNKPMTWED	10	Unmodified	_TQNKPMTWED_					0	0	0		ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	ENSG00000177485|ENST00000557385|ZBTB33	MULTI-SECPEP	OvCa99_classI_Rep5	1	624.800537109375	2	625.27952	1248.54449	2.0605	0.0012884	0.50267	0.00031431	2.5632	0.0016027	625.2797407986858	76.466	1.2164	76.466	76.036	77.252	0					41	29	2	0	0	0	0.027088	1	7723	7723		26.693	14.486	1	406250			57864	7689	47720	47765	63429	63429					-0.06984331338958327
TQNLHIKYVD	10	Unmodified	_TQNLHIKYVD_					0	0	0			REV__ENSG00000101825|ENST00000217939|MXRA5	REV__ENSG00000101825|ENST00000217939|MXRA5	MULTI-MSMS	OvCa9_classI_Rep4_	4	615.8294067382812	2	615.827495	1229.64044	-0.63901	-0.00039352	0.14286	8.7977E-05	-0.49615	-0.00030554	615.8275027674458	81.228	2.188	78.517	77.714	79.902	-2.7106					119	44	5	0	0	0	0.50999	1	6700	6700		52.937	1.744	1	2431800	+		57865	17519	47721	47766	63430	63430					0.034801845634547135
TQPGTGWVQF	10	Unmodified	_TQPGTGWVQF_					0	0	0		nc|ENSG00000157191|Q9NVZ3-4|NECAP2;ENSG00000157191|ENST00000337132|NECAP2	nc|ENSG00000157191|Q9NVZ3-4|NECAP2	nc|ENSG00000157191|Q9NVZ3-4|NECAP2	MSMS	OvCa99_classI_Rep5	1	560.7760620117188	2	560.774731	1119.53491	NaN	NaN	NaN	NaN	NaN	NaN	NaN	121.72	1	121.72	121.22	122.22	0								0	0	0	0.065988	1	14008	14008		104.01	21.773	1				57866	5879	47722	47767	63431	63431					-0.020077315621620073
TQPMRRQLM	9	Unmodified	_TQPMRRQLM_					0	0	0			REV__nc|ENSG00000157540|Q13627-4|DYRK1A	REV__nc|ENSG00000157540|Q13627-4|DYRK1A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	579.8378295898438	2	580.804985	1159.59542	-1.6538	-0.00096055	0.68858	0.00039993	-0.96523	-0.00056061	580.8058996042024	66.131	0.87383	62.641	62.077	62.951	-3.4902					29	17	2	0	0	0	0.027462	1	4725	4725		27.882	4.3595	1	31513	+		57867	28947	47723	47768	63432	63432					0.02200339224941672
TQPPPRVP	8	Unmodified	_TQPPPRVP_					0	0	0		ENST00000376552.6_1_9:82187497-82187692:+|nuORF	ENST00000376552.6_1_9:82187497-82187692:+|nuORF	ENST00000376552.6_1_9:82187497-82187692:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	446.24224853515625	2	446.255977	890.497401	0.020099	8.9692E-06	-2.2194	-0.00099044	-2.1993	-0.00098147	446.2559166222682	58.485	0.80022	55.093	54.651	55.451	-3.392					23	15	2	0	0	0	0.028476	1	3881	3881		25.45	12.491	1	30511			57868	11072	47724	47769	63433	63433					0.04777221962899603
TQPRPLLLAA	10	Unmodified	_TQPRPLLLAA_					0	0	0			REV__ENST00000273814.7_1_4:953005-953860:-|nuORF	REV__ENST00000273814.7_1_4:953005-953860:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3311767578125	2	540.332216	1078.64988	0.34656	0.00018726	-4.1131	-0.0022225	-3.7666	-0.0020352	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.73378	1	13843	13843		26.693	3.1702	1	342200	+		57869	24084	47725	47770	63434	63434					0.11369997639667417
TQPTHNGNVL	10	Unmodified	_TQPTHNGNVL_					0	0	0			REV__PHLDB1|p.P441Lfs*20|1|0.05|ENSG00000019144|chr11:118628144-118628144|C/-|frameshift_variant	REV__PHLDB1|p.P441Lfs*20|1|0.05|ENSG00000019144|chr11:118628144-118628144|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	539.7998046875	2	540.775262	1079.53597	-1.019	-0.00055104	1.7286	0.00093477	0.70959	0.00038373	540.7760397137139	65.143	1.356	61.658	61.309	62.665	-3.4854					48	27	2	0	0	0	0.026931	1	4700	4700		37.812	2.1932	1	208810	+		57870	29291	47726	47771	63435	63435					-0.000615171932395242
TQPTYPVQP	9	Unmodified	_TQPTYPVQP_					0	0	0		nc|ENSG00000183283|Q15038-5|DAZAP2;nc|ENSG00000183283|Q15038-2|DAZAP2;ENSG00000183283|ENST00000412716|DAZAP2;ENST00000549041.1_1_12:51632691-51634266:+|nuORF;ENST00000552459.2_1_12:51634062-51634266:+|nuORF;ENST00000552173.5_1_12:51632691-51634513:+|nuORF;nc|ENSG00000183283|Q15038-4|DAZAP2;nc|ENSG00000183283|Q15038-3|DAZAP2;nc|ENSG00000183283|Q15038-6|DAZAP2	nc|ENSG00000183283|Q15038-5|DAZAP2	nc|ENSG00000183283|Q15038-5|DAZAP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7465209960938	2	515.763832	1029.51311	-0.56406	-0.00029092	2.6622	0.0013731	2.0982	0.0010822	515.7649296162008	96.059	0.86517	93.634	93.355	94.22	-2.4256					28	16	2	0	0	0	0.027462	1	8525	8525		19.997	3.5236	1	60856			57871	15211	47727	47772	63436	63436					-0.00046536310719602625
TQQEQIALV	9	Unmodified	_TQQEQIALV_					0	0	0		tr|A0A553SHH4|A0A553SHH4_NIACIStageVsporulationproteinTOS=NialliacirculansOX=1397GN=spoVTPE=4SV=1	tr|A0A553SHH4|A0A553SHH4_NIACIStageVsporulationproteinTOS=NialliacirculansOX=1397GN=spoVTPE=4SV=1	tr|A0A553SHH4|A0A553SHH4_NIACIStageVsporulationproteinTOS=NialliacirculansOX=1397GN=spoVTPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.2815551757812	2	515.282389	1028.55022	1.5786	0.00081344	0.5694	0.0002934	2.148	0.0011068	515.2829484787893	118.6	0.51756	118.6	118.3	118.81	0					14	10	2	0	0	0	0.38969	1	13606	13606		52.937	3.4952	1	104920			57872	33273	47728	47773	63437	63437					0.037091352350216766
TQQEQIALV	9	Unmodified	_TQQEQIALV_					0	0	0		tr|A0A553SHH4|A0A553SHH4_NIACIStageVsporulationproteinTOS=NialliacirculansOX=1397GN=spoVTPE=4SV=1	tr|A0A553SHH4|A0A553SHH4_NIACIStageVsporulationproteinTOS=NialliacirculansOX=1397GN=spoVTPE=4SV=1	tr|A0A553SHH4|A0A553SHH4_NIACIStageVsporulationproteinTOS=NialliacirculansOX=1397GN=spoVTPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	515.283935546875	2	515.282389	1028.55022	0.94124	0.00048501	-1.1969	-0.00061674	-0.25566	-0.00013174	515.2818157223961	106.61	4.2629	105.34	104.28	108.54	-1.267					165	82	5	0	0	0	0.5811	1	7566	7566		34.173	0.25091	1	4317700			57873	33273	47728	47773	63438	63438					0.037091352350216766
TQQLVPLVR	9	Unmodified	_TQQLVPLVR_					0	0	0		nc|ENSG00000075292|Q14966-6|ZNF638	nc|ENSG00000075292|Q14966-6|ZNF638	nc|ENSG00000075292|Q14966-6|ZNF638	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3176879882812	2	527.324391	1052.63423	0.073619	3.8821E-05	0.47365	0.00024977	0.54727	0.00028859	527.3246193546854	67.365	0.86504	67.365	66.977	67.842	0					37	21	2	0	0	0	0.027462	1	6275	6275		44.377	15.207	1	1575500			57874	14891	47729	47774	63439	63439					0.11001711122594315
TQQSKKPLA	9	Unmodified	_TQQSKKPLA_					0	0	0			REV__ENST00000441864.6_1_19:50170019-50170310:+|nuORF	REV__ENST00000441864.6_1_19:50170019-50170310:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.79376220703125	2	500.792924	999.571294	0.79977	0.00040052	-1.8854	-0.00094417	-1.0856	-0.00054365	500.7917287612207	86.365	1.1363	83.738	83.512	84.649	-2.6269					55	22	3	0	0	0	0.33652	1	7324	7324		58.782	0	1	609400	+		57875	25848	47730	47775	63440	63440					0.07149145334551577
TQQTDLQLT	9	Unmodified	_TQQTDLQLT_					0	0	0			REV__PLXNA3|p.I1452Rfs*8|1|0.29|ENSG00000130827|chrX:154468890-154468902|TTGATGCCATCAC/-|frameshift_variant	REV__PLXNA3|p.I1452Rfs*8|1|0.29|ENSG00000130827|chrX:154468890-154468902|TTGATGCCATCAC/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	524.7930908203125	2	524.269478	1046.5244	-0.69069	-0.00036211	1.4793	0.00077555	0.78861	0.00041344	524.2701654431647	78.414	0.80627	76.061	75.647	76.453	-2.3527					23	15	2	0	0	0	0.027411	1	4147	4147		45.972	0	1	53046	+		57876	18978	47731	47776	63441	63441					0.0030024099276033667
TQQTPLWL	8	Unmodified	_TQQTPLWL_					0	0	0		ENST00000373202.7_1_10:72639263-72639515:+|nuORF	ENST00000373202.7_1_10:72639263-72639515:+|nuORF	ENST00000373202.7_1_10:72639263-72639515:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.3180847167969	2	493.768917	985.523281	-0.3982	-0.00019662	0.43183	0.00021322	0.033623	1.6602E-05	493.7690989053031	103.41	1.3849	102.73	102.43	103.81	-0.68459					49	27	3	0	0	0	0.028476	1	9579	9579		68.787	18.762	1	64751			57877	11002	47732	47777	63442	63442					0.029940714145254788
TQQWLFEHTN	10	Unmodified	_TQQWLFEHTN_					0	0	0		ENST00000520647.5_1_5:153789305-153796529:+|nuORF;ENST00000517958.1_1_5:153783698-153796529:+|nuORF;nc|ENSG00000164574|Q86SR1-4|GALNT10;nc|ENSG00000164574|Q86SR1-2|GALNT10;ENSG00000164574|ENST00000297107|GALNT10	ENST00000520647.5_1_5:153789305-153796529:+|nuORF	ENST00000520647.5_1_5:153789305-153796529:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.7818298339844	3	435.207043	1302.5993	0.60306	0.00026246	2.2733	0.00098937	2.8764	0.0012518	435.20790389566014	57.298	0.56018	53.953	53.577	54.138	-3.3449					13	10	2	0	0	0	0.027187	1	3706	3706		19.263	5.1767	1	12900			57878	6466	47733	47778	63443	63443					-0.0398957647601037
TQRLPRLV	8	Unmodified	_TQRLPRLV_					0	0	0		tr|A0A7D6VNU6|A0A7D6VNU6_9CLOTShort-chain-enoyl-CoAhydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_20395PE=3SV=1	tr|A0A7D6VNU6|A0A7D6VNU6_9CLOTShort-chain-enoyl-CoAhydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_20395PE=3SV=1	tr|A0A7D6VNU6|A0A7D6VNU6_9CLOTShort-chain-enoyl-CoAhydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_20395PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	491.7821960449219	2	491.811451	981.608348	1.0243	0.00050375	-1.63	-0.00080163	-0.60568	-0.00029788	491.81048467732336	70.895	1.1481	68.324	68.015	69.163	-2.5707					34	21	2	0	0	0	0.028476	1	5692	5692		30.504	0	1	83927			57879	34728	47734	47779	63444	63444					0.11680861670981812
TQRLPRLV	8	Unmodified	_TQRLPRLV_					0	0	0		tr|A0A7D6VNU6|A0A7D6VNU6_9CLOTShort-chain-enoyl-CoAhydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_20395PE=3SV=1	tr|A0A7D6VNU6|A0A7D6VNU6_9CLOTShort-chain-enoyl-CoAhydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_20395PE=3SV=1	tr|A0A7D6VNU6|A0A7D6VNU6_9CLOTShort-chain-enoyl-CoAhydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_20395PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	491.811451	981.608348	0.087685	4.3125E-05	-0.35763	-0.00017589	-0.26994	-0.00013276	491.8112158280004	71.051	1.0994	68.331	68.112	69.211	-2.7196	0.080269	8.3871E-05	NaN	35.618	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122680			57880	34728	47734	47779							0.11680861670981812
TQRPASLH	8	Unmodified	_TQRPASLH_					0	0	0		ENST00000517791.1_1_5:149785806-149786884:-|nuORF	ENST00000517791.1_1_5:149785806-149786884:-|nuORF	ENST00000517791.1_1_5:149785806-149786884:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	455.26715087890625	2	455.248683	908.482814	-0.077446	-3.5257E-05	1.969	0.00089639	1.8916	0.00086113	455.2502357992784	44.794	0.26971	44.794	44.662	44.932	0					9	5	2	0	0	0	0.028476	1	3059	3059		29.15	0	1	41174			57881	13062	47735	47780	63445	63445					0.024911498147389466
TQRQLVGFPL	10	Unmodified	_TQRQLVGFPL_					0	0	0		ENST00000216044.9_1_22:39127479-39127569:+|nuORF	ENST00000216044.9_1_22:39127479-39127569:+|nuORF	ENST00000216044.9_1_22:39127479-39127569:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	579.2904663085938	2	579.835123	1157.65569	-0.72254	-0.00041895	0.46225	0.00026803	-0.26029	-0.00015093	579.8352563131114	102.66	1.0986	100.46	100.2	101.3	-2.1994					51	20	4	0	0	0	0.026849	1	9240	9240		32.812	2.4947	1	176550			57882	9663	47736	47781	63446	63446					0.08317096151336045
TQRRKSDPQ	9	Unmodified	_TQRRKSDPQ_					0	0	0			REV__nc|ENSG00000125944|O43390-4|HNRNPR;REV__nc|ENSG00000271793|O60506-2|SYNCRIP	REV__nc|ENSG00000271793|O60506-2|SYNCRIP	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.799560546875	2	558.299436	1114.58432	-0.13845	-7.7298E-05	-0.42171	-0.00023544	-0.56016	-0.00031274	558.2992902164187	59.828	1.0494	59.828	59.265	60.314	0					42	26	3	0	0	0	0.027462	1	5182	5182		30.504	8.5438	1	3306900	+		57883	18761;19273	47737	47782	63447	63447					0.03160976446656605
TQRRLIQSFR	10	Unmodified	_TQRRLIQSFR_					0	0	0			REV__nc|ENSG00000111783|Q33E94-4|RFX4	REV__nc|ENSG00000111783|Q33E94-4|RFX4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.26263427734375	3	435.58971	1303.7473	0.51594	0.00022474	1.2696	0.00055301	1.7855	0.00077775	435.9233022899085	65.036	0.48241	61.55	61.26	61.743	-3.4854					15	9	2	0	0	0	0.027006	1	4657	4657		24.232	1.4504	1	13035	+		57884	18058	47738	47783	63448	63448					0.10757779568484693
TQRTEYRDV	9	Unmodified	_TQRTEYRDV_					0	0	0		nc|ENSG00000171606|Q96GC6-3|ZNF274;nc|ENSG00000171606|Q96GC6-2|ZNF274;ENSG00000171606|ENST00000617501|ZNF274;nc|ENSG00000171606|Q96GC6-4|ZNF274;ENST00000595146.1_1_19:58722883-58724506:+|nuORF	nc|ENSG00000171606|Q96GC6-3|ZNF274	nc|ENSG00000171606|Q96GC6-3|ZNF274	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.2892456054688	2	584.291276	1166.568	-0.40215	-0.00023498	-0.11486	-6.7111E-05	-0.51701	-0.00030209	584.2910915606898	112.73	0.94001	111.22	110.95	111.89	-1.5111					56	18	4	0	0	0	0.59259	1	10428	10428		32.812	1.2826	1	169410			57885	7218	47739	47784	63449	63449					-0.00862149510112431
TQRVFINLL	9	Unmodified	_TQRVFINLL_					0	0	0		ENSG00000140057|ENST00000267584|AK7;ENST00000556643.1_1_14:96858491-96871207:+|nuORF	ENSG00000140057|ENST00000267584|AK7	ENSG00000140057|ENST00000267584|AK7	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.9608764648438	2	552.332216	1102.64988	1.1727	0.00064774	-3.033	-0.0016752	-1.8602	-0.0010275	552.330944105125	82.426	0.46992	80.828	80.54	81.01	-1.5988					11	8	2	0	0	0	0.027462	1	6996	6996		26.693	3.6504	1	13820			57886	4820	47740	47785	63450	63450					0.10265997639658053
TQSFAVGSIS	10	Unmodified	_TQSFAVGSIS_					0	0	0		ENSG00000174448|ENST00000307844|STARD6	ENSG00000174448|ENST00000307844|STARD6	ENSG00000174448|ENST00000307844|STARD6	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.7549743652344	2	498.753464	995.492375	-0.22941	-0.00011442	-0.30842	-0.00015383	-0.53783	-0.00026825	498.75329682541377	57.563	1.2633	54.218	53.934	55.197	-3.3449					48	24	4	0	0	0	0.50873	1	3748	3748		53.089	3.5529	1	241020			57887	7466	47741	47786	63451	63451					-0.0055512669038080276
TQSFAVGSIS	10	Unmodified	_TQSFAVGSIS_					0	0	0		ENSG00000174448|ENST00000307844|STARD6	ENSG00000174448|ENST00000307844|STARD6	ENSG00000174448|ENST00000307844|STARD6	MULTI-MATCH	OvCa99_classI_Rep5	1		2	498.753464	995.492375	-0.50629	-0.00025251	-6.5971	-0.0032903	-7.1034	-0.0035428	498.7502961940258	54.313	0.80024	54.313	54.048	54.848	0	-0.0045149	-0.0045593	NaN	53.089	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	314490			57888	7466	47741	47786							-0.0055512669038080276
TQSFAVGSIS	10	Unmodified	_TQSFAVGSIS_					0	0	0		ENSG00000174448|ENST00000307844|STARD6	ENSG00000174448|ENST00000307844|STARD6	ENSG00000174448|ENST00000307844|STARD6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	498.753464	995.492375	-0.86206	-0.00042995	0.50285	0.0002508	-0.35921	-0.00017916	498.7534805564727	57.214	1.093	54.422	54.08	55.173	-2.792	0.10426	0.002523	NaN	53.089	34	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44795			57889	7466	47741	47786							-0.0055512669038080276
TQSGSLLFI	9	Unmodified	_TQSGSLLFI_					0	0	0		ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	ENSG00000149257|ENST00000358171|SERPINH1	MULTI-MSMS	OvCa99_classI_Rep5	1	483.26995849609375	2	483.26875	964.522947	2.1556	0.0010417	-0.43918	-0.00021224	1.7164	0.00082948	483.2684257119935	137.04	1.0943	137.04	136.73	137.82	0					60	22	4	0	0	0	0.023304	1	15983	15983		143.11	23.55	1	2138000			57890	5448	47742	47787	63452	63452					0.039266516946554475
TQSKWVAH	8	Unmodified	_TQSKWVAH_					0	0	0			REV__chr19:56103227-56106118|190|11.94|0.17|6.16|-|1|TE_info:L1MB8,L1MB8_dup15542,L1,LINE,donor,-,56106118,56106444|ZNF787,None|3	REV__chr19:56103227-56106118|190|11.94|0.17|6.16|-|1|TE_info:L1MB8,L1MB8_dup15542,L1,LINE,donor,-,56106118,56106444|ZNF787,None|3	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.8105163574219	2	478.751059	955.487565	-0.55126	-0.00026392	3.5518	0.0017004	3.0006	0.0014365	478.7525701848624	59.582	1.1866	56.802	55.937	57.124	-2.7801					27	22	2	0	0	0	0.028476	1	4309	4309		24.203	7.4978	1	28369	+		57891	15984	47743	47788	63453	63453					0.008040339575131839
TQSSQHLL	8	Unmodified	_TQSSQHLL_					0	0	0		L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|11|1|sense	L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|11|1|sense	L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|11|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.72589111328125	2	457.240524	912.466495	-0.52905	-0.0002419	-0.52772	-0.00024129	-1.0568	-0.0004832	457.24028109407345	49.142	1.0448	49.142	48.986	50.031	0					31	23	2	0	0	0	0.028476	1	3713	3713		26.796	8.4717	1	214240			57892	14557	47744	47789	63454	63454					0.0067602385800000775
TQSTVGII	8	Unmodified	_TQSTVGII_					0	0	0		ENSG00000137106|ENST00000318158|GRHPR;ENST00000377824.8_1_9:37422741-37431094:+|nuORF;ENST00000497693.1_1_9:37428391-37428742:+|nuORF;ENST00000493368.5_1_9:37422710-37428742:+|nuORF;ENST00000460882.5_1_9:37422710-37436776:+|nuORF;CLTB-GRHPR|1|fusion	ENSG00000137106|ENST00000318158|GRHPR	ENSG00000137106|ENST00000318158|GRHPR	MULTI-SECPEP	OvCa9_classI_Rep4_	4	409.8809814453125	2	409.734543	817.454533	0.50905	0.00020858	-2.6662	-0.0010925	-2.1572	-0.00088388	409.7343198009644	52.558	0.45679	49.35	48.943	49.4	-3.208					9	8	2	0	0	0	0.028476	1	3136	3136		7.6903	0	1	8676.6			57893	4559	47745	47790	63455	63455					0.03850407114805421
TQTAVITRI	9	Unmodified	_TQTAVITRI_					0	0	0		nc|ENSG00000101447|Q9H4H8-2|FAM83D;ENSG00000101447|ENST00000619850|FAM83D	nc|ENSG00000101447|Q9H4H8-2|FAM83D	nc|ENSG00000101447|Q9H4H8-2|FAM83D	MULTI-MSMS	OvCa99_classI_Rep5	1	501.801513671875	2	501.800749	1001.58694	0.21146	0.00010611	-0.71822	-0.0003604	-0.50676	-0.00025429	501.800372586311	72.706	0.86429	72.706	72.412	73.276	0					70	21	4	0	0	0	0.052089	2	7116	7085;7116		117.53	8.3166	1	12691000			57894	2179	47746	47791	63456;63457	63457					0.08621431851599937
TQTGLVNRL	9	Unmodified	_TQTGLVNRL_					0	0	0			REV__nc|ENSG00000133115|Q8TAV4-2|STOML3	REV__nc|ENSG00000133115|Q8TAV4-2|STOML3	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2892761230469	2	501.290548	1000.56654	-1.4695	-0.00073667	1.3149	0.00065914	-0.15466	-7.7529E-05	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.66262	1	11275	11275		24.519	0	1	97838	+		57895	19130	47747	47792	63458	63458					0.06628261191792717
TQTHGPLSLCV	11	Unmodified	_TQTHGPLSLCV_					0	0	0			REV__nc|ENSG00000182329|Q0VF49|KIAA2012	REV__nc|ENSG00000182329|Q0VF49|KIAA2012	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.2911376953125	2	578.294973	1154.57539	-6.4833	-0.0037493	-3.688	-0.0021328	-10.171	-0.005882	578.2924756503293	159.15	2.0345	157.57	156.14	158.17	-1.5858					77	57	2	0	0	0	0.69081	1	15662	15662		32.812	8.2932	1	24594	+		57896	22283	47748	47793	63459	63459					0.004288667659693601
TQTILFNL	8	Unmodified	_TQTILFNL_					0	0	0			REV__ENSG00000128908|ENST00000648947|INO80	REV__ENSG00000128908|ENST00000648947|INO80	MULTI-SECPEP	OvCa9_classI_Rep4_	4	474.79241943359375	2	475.271293	948.528032	0.052258	2.4837E-05	-0.0262	-1.2452E-05	0.026058	1.2385E-05	475.2710164651839	106.01	0.86616	103.99	103.74	104.61	-2.0161					23	16	2	0	0	0	0.028476	1	9652	9652		26.693	0	1	53652	+		57897	18876	47749	47794	63460	63460					0.05170955557275647
TQTTHELTI	9	Unmodified	_TQTTHELTI_					0	0	0		ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	ENSG00000169564|ENST00000303577|PCBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	522.273193359375	2	522.272021	1042.52949	-0.75597	-0.00039482	-0.29013	-0.00015153	-1.0461	-0.00054635	522.2718868405177	65.274	1.4969	65.274	64.955	66.452	0					101	37	5	0	0	0	0.0069927	3	5986	5960;5986;6017		186.09	86.714	1	39863000			57898	7018	47750	47795	63461;63462;63463	63462					0.009925448553758542
TQVNRLGRRPQ	11	Unmodified	_TQVNRLGRRPQ_					0	0	0		nc|ENSG00000133619|A5PL33-3|KRBA1;nc|ENSG00000133619|A5PL33-2|KRBA1;nc|ENSG00000133619|A5PL33|KRBA1;ENSG00000133619|ENST00000496259|KRBA1	nc|ENSG00000133619|A5PL33-3|KRBA1	nc|ENSG00000133619|A5PL33-3|KRBA1	MULTI-SECPEP	OvCa9_classI_Rep3	3	442.284912109375	3	442.256731	1323.74836	-0.70112	-0.00031007	-0.46889	-0.00020737	-1.17	-0.00051744	442.5900192461032	83.328	0.34013	81.031	80.882	81.222	-2.2963					9	6	2	0	0	0	0.026068	1	4746	4746		27.644	1.5805	1	10484			57899	4227	47751	47796	63464	63464					0.09943993937417872
TQVQDTQPL	9	Unmodified	_TQVQDTQPL_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	OvCa9_classI_Rep2	2	514.3115844726562	2	515.264196	1028.51384	-1.0739	-0.00055332	1.0476	0.00053977	-0.026309	-1.3556E-05	515.2644481038393	52.215	0.93846	49.402	49.146	50.085	-2.8129					26	18	2	0	0	0	0.027453	1	3528	3528		45.972	0.020292	1	24336	+		57900	19832	47752	47797	63465	63465					0.0007225833833217621
TQVVGILKI	9	Unmodified	_TQVVGILKI_					0	0	0		ENSG00000198898|ENST00000361183|CAPZA2;ENST00000426421.5_1_7:116544367-116557918:+|nuORF	ENSG00000198898|ENST00000361183|CAPZA2	ENSG00000198898|ENST00000361183|CAPZA2	MULTI-MSMS	OvCa99_classI_Rep5	1	485.81939697265625	2	485.81841	969.622267	2.6623	0.0012934	-0.63294	-0.0003075	2.0293	0.00098589	485.817926739639	107.71	1.1883	107.71	107.44	108.63	0					64	27	4	0	0	0	0.0070314	2	12174	12143;12174		185.55	50.739	1	7220600			57901	8903	47753	47798	63466;63467	63467					0.13624094379406415
TQYFILLII	9	Unmodified	_TQYFILLII_					0	0	0		ENSG00000140848|ENST00000290776|CPNE2;nc|ENSG00000140848|Q96FN4-2|CPNE2;CPNE2|p.K516Rfs*22|1|0.41|ENSG00000140848|chr16:57147556-57147557|AA/-|frameshift_variant	ENSG00000140848|ENST00000290776|CPNE2	ENSG00000140848|ENST00000290776|CPNE2	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3446655273438	2	562.341718	1122.66888	1.2434	0.00069921	1.8105	0.0010181	3.0539	0.0017173	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.6959	1	14274	14274		19.36	0	1	683710			57902	4877	47754	47799	63468	63468					0.11245534210729602
TQYKFRLTA	9	Unmodified	_TQYKFRLTA_					0	0	0		ENSG00000075420|ENST00000415807|FNDC3B;nc|ENSG00000075420|Q53EP0-2|FNDC3B;ENST00000469491.5_1_3:171830269-172055226:+|nuORF;ENST00000494000.1_1_3:172048292-172052928:+|nuORF	ENSG00000075420|ENST00000415807|FNDC3B;ENST00000494000.1_1_3:172048292-172052928:+|nuORF	ENSG00000075420|ENST00000415807|FNDC3B	MULTI-MSMS	OvCa99_classI_Rep5	1	564.3153686523438	2	564.314023	1126.61349	-0.25457	-0.00014366	0.45692	0.00025785	0.20235	0.00011419	564.314011909235	68.191	1.1028	68.191	67.916	69.019	0					77	26	4	0	0	0	0.31058	1	6421	6421		61.765	12.229	1	4753400			57903	1532;12747	47755	47800	63469	63469					0.055251207429591886
TRAALQKRY	9	Unmodified	_TRAALQKRY_					0	0	0		ENSG00000143878|ENST00000272233|RHOB	ENSG00000143878|ENST00000272233|RHOB	ENSG00000143878|ENST00000272233|RHOB	MULTI-MSMS	OvCa99_classI_Rep5	1	553.8250122070312	2	553.825089	1105.63563	-0.1369	-7.5816E-05	-0.31632	-0.00017519	-0.45322	-0.000251	553.8249829774524	30.211	1.0873	30.211	30.036	31.124	0					38	21	2	0	0	0	0.2077	1	1144	1144		75.043	29.091	1	1753000			57904	5104	47756	47801	63470	63470					0.08703345211370106
TRADRYKKAL	10	Unmodified	_TRADRYKKAL_					0	0	0			REV__ENST00000578904.1_1_17:80208040-80213403:-|nuORF	REV__ENST00000578904.1_1_17:80208040-80213403:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	611.3543701171875	2	611.356754	1220.69895	-3.7398	-0.0022864	2.6738	0.0016346	-1.0661	-0.00065175	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.74374	1	15131	15131		25.574	5.5773	1	331570	+		57905	19746	47757	47802	63471	63471					0.09743285928607293
TRADRYKKAL	10	Unmodified	_TRADRYKKAL_					0	0	0			REV__ENST00000578904.1_1_17:80208040-80213403:-|nuORF	REV__ENST00000578904.1_1_17:80208040-80213403:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	611.355712890625	2	611.356754	1220.69895	-3.1571	-0.0019301	2.0725	0.001267	-1.0847	-0.00066312	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.69073	1	12888	12888		31.53	1.2121	1	666990	+		57906	19746	47757	47802	63472	63472					0.09743285928607293
TRATILVRL	9	Unmodified	_TRATILVRL_					0	0	0		ENSG00000164867|ENST00000297494|NOS3	ENSG00000164867|ENST00000297494|NOS3	ENSG00000164867|ENST00000297494|NOS3	MULTI-MSMS	OvCa99_classI_Rep5	1	521.8417358398438	2	521.840208	1041.66586	1.4183	0.00074013	0.51801	0.00027032	1.9363	0.0010105	521.8404066657017	78.06	0.78228	78.06	77.801	78.583	0					34	18	3	0	0	0	0.45842	1	7898	7898		46.457	0.50483	1	999900			57907	6493	47758	47803	63473	63473					0.14669703876575113
TRAYNKEA	8	Unmodified	_TRAYNKEA_					0	0	0		ENSG00000035928|ENST00000349703|RFC1;nc|ENSG00000035928|P35251|RFC1	ENSG00000035928|ENST00000349703|RFC1	ENSG00000035928|ENST00000349703|RFC1	MULTI-MSMS	OvCa99_classI_Rep5	1	476.745849609375	2	476.745973	951.477394	0.44533	0.00021231	-1.3404	-0.00063905	-0.89511	-0.00042674	476.7451931722086	46.043	0.70182	46.043	45.8	46.501	0					44	15	4	0	0	0	0.32444	1	3216	3216		102.77	25.927	1	2971200			57908	1085	47759	47804	63474	63474					-0.000285737677245379
TRCVDGRSEPH	11	Unmodified	_TRCVDGRSEPH_					0	0	0			REV__nc|ENSG00000167670|Q13111-2|CHAF1A	REV__nc|ENSG00000167670|Q13111-2|CHAF1A	MULTI-SECPEP	OvCa99_classI_Rep5	1	628.8298950195312	2	628.79366	1255.57277	1.7014	0.0010698	0.51718	0.0003252	2.2186	0.001395	628.7937153217985	130.33	0.57118	130.33	130.06	130.63	0					15	11	2	0	0	0	0.025594	1	15105	15105		15.333	0	1	78364	+		57909	28984	47760	47805	63475	63475					-0.04479588638992027
TRDNLREIL	9	Unmodified	_TRDNLREIL_					0	0	0			REV__tr|A0A7D7A4W4|A0A7D7A4W4_9CLOTLacIfamilyDNA-bindingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_04830PE=4SV=1	REV__tr|A0A7D7A4W4|A0A7D7A4W4_9CLOTLacIfamilyDNA-bindingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_04830PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.3287353515625	2	565.319837	1128.62512	-0.12527	-7.0817E-05	-4.0958	-0.0023155	-4.2211	-0.0023863	565.3176731052241	55.549	0.48989	55.549	55.233	55.723	0					20	11	3	0	0	0	0.027462	1	4508	4508		34.173	1.3601	1	290170	+		57910	32619	47761	47806	63476	63476					0.06595317766300468
TRDPHISSLV	10	Unmodified	_TRDPHISSLV_					0	0	0			REV__nc|ENSG00000123600|Q9H825-2|METTL8	REV__nc|ENSG00000123600|Q9H825-2|METTL8	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.7857666015625	2	562.806562	1123.59857	1.6298	0.00091725	-3.6616	-0.0020608	-2.0318	-0.0011435	563.305930403192	124.56	0.13943	124.56	124.47	124.61	0					4	2	2	0	0	0	0.026915	1	14371	14371		35.618	11.416	1	39516	+		57911	28827	47762	47807	63477	63477					0.04171628874951239
TRDQMKMF	8	Unmodified	_TRDQMKMF_					0	0	0		ENST00000532066.1_1_11:35745832-35827932:+|nuORF;ENSG00000166326|ENST00000299413|TRIM44	ENST00000532066.1_1_11:35745832-35827932:+|nuORF	ENST00000532066.1_1_11:35745832-35827932:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	528.7510375976562	2	528.751887	1055.48922	-4.8361	-0.0025571	3.8872	0.0020554	-0.94889	-0.00050173	528.7535569152325	156.17	0.52992	155.94	155.67	156.2	-0.22697					25	16	2	0	0	0	0.75426	1	15888	15888		18.324	3.4595	1	9586.7			57912	6664	47763	47808	63478	63478					-0.03630416340388365
TREDPNLVPSI	11	Unmodified	_TREDPNLVPSI_					0	0	0		ENSG00000135940|ENST00000258424|COX5B	ENSG00000135940|ENST00000258424|COX5B	ENSG00000135940|ENST00000258424|COX5B	MULTI-MSMS	OvCa9_classI_Rep2	2	620.8323364257812	2	620.830234	1239.64592	-1.2546	-0.00077886	4.0231	0.0024976	2.7685	0.0017188	620.8326870345176	98.983	3.0275	98.09	97.757	100.78	-0.89305					162	60	6	0	0	0	0.34051	1	9034	9034		65.465	1.2581	1	2033000			57913	4436	47764	47809	63479	63479					0.03567863355283407
TRELLKPLIA	10	Unmodified	_TRELLKPLIA_					0	0	0			REV__tr|A0A553SNZ4|A0A553SNZ4_NIACIFlagellarproteinexportATPaseFliIOS=NialliacirculansOX=1397GN=fliIPE=4SV=1	REV__tr|A0A553SNZ4|A0A553SNZ4_NIACIFlagellarproteinexportATPaseFliIOS=NialliacirculansOX=1397GN=fliIPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	577.3659057617188	2	577.368798	1152.72304	-5.5665	-0.0032139	2.1457	0.0012388	-3.4208	-0.0019751	577.369928690125	160.74	1.397	160.51	160.13	161.53	-0.22696					95	27	5	0	0	0	0.74374	1	16412	16412		25.574	1.0549	1	1195800	+		57914	30473	47765	47810	63480	63480					0.1527912636227029
TRELLKPLIA	10	Unmodified	_TRELLKPLIA_					0	0	0			REV__tr|A0A553SNZ4|A0A553SNZ4_NIACIFlagellarproteinexportATPaseFliIOS=NialliacirculansOX=1397GN=fliIPE=4SV=1	REV__tr|A0A553SNZ4|A0A553SNZ4_NIACIFlagellarproteinexportATPaseFliIOS=NialliacirculansOX=1397GN=fliIPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	577.3666381835938	2	577.368798	1152.72304	-7.5995	-0.0043877	4.078	0.0023545	-3.5215	-0.0020332	577.3709835310325	161.44	1.2472	160.07	159.69	160.93	-1.3692					76	25	4	0	0	0	0.64063	1	14027	14027		37.159	8.0096	1	379650	+		57915	30473	47765	47810	63481	63481					0.1527912636227029
TRFETSAGF	9	Unmodified	_TRFETSAGF_					0	0	0			REV__nc|ENSG00000154065|Q8N6D5-3|ANKRD29	REV__nc|ENSG00000154065|Q8N6D5-3|ANKRD29	MULTI-MSMS	OvCa99_classI_Rep5	1	508.2436218261719	2	508.245806	1014.47706	-0.12135	-6.1678E-05	-4.276	-0.0021732	-4.3973	-0.0022349	508.24356424505527	30.309	0.84364	30.309	30.086	30.93	0					31	16	3	0	0	0	0.33652	1	1152	1152		58.782	7.4465	1	475850	+		57916	20358	47766	47811	63482	63482					-0.029599934875705003
TRFPPVPQ	8	Unmodified	_TRFPPVPQ_					0	0	0		ENST00000589004.5_1_17:74622410-74625315:-|nuORF;ENST00000592042.5_1_17:74621414-74633692:-|nuORF;ENSG00000070526|ENST00000156626|ST6GALNAC1	ENST00000589004.5_1_17:74622410-74625315:-|nuORF	ENST00000589004.5_1_17:74622410-74625315:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.8139343261719	2	471.263802	940.513051	0.80956	0.00038152	-2.7295	-0.0012863	-1.92	-0.00090482	471.2628128655937	66.719	1.3326	63.229	62.951	64.284	-3.4902					46	26	3	0	0	0	0.028476	1	4954	4954		30.504	0	1	194740			57917	1428	47767	47812	63483	63483					0.04041508479940603
TRFPSAVVV	9	Unmodified	_TRFPSAVVV_					0	0	0			REV__ENST00000599652.5_1_19:49965164-49969478:+|nuORF	REV__ENST00000599652.5_1_19:49965164-49969478:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.24267578125	2	488.284734	974.554916	-0.26688	-0.00013031	0.86243	0.00042111	0.59554	0.0002908	488.28527419976996	65.228	0.55104	65.228	64.995	65.546	0					20	13	2	0	0	0	0.027462	1	5982	5982		30.504	14.03	1	381040	+		57918	28025	47768	47813	63484	63484					0.0666206416847217
TRFRHLQTL	9	Unmodified	_TRFRHLQTL_					0	0	0		ENSG00000113916|ENST00000406870|BCL6;nc|ENSG00000113916|P41182-2|BCL6;ENST00000479110.1_1_3:187442701-187443361:-|nuORF;ENSG00000161940|ENST00000293805|BCL6B	ENSG00000113916|ENST00000406870|BCL6;ENSG00000161940|ENST00000293805|BCL6B	ENSG00000113916|ENST00000406870|BCL6	MULTI-MSMS	OvCa99_classI_Rep5	1	586.3405151367188	2	586.338364	1170.66217	-0.49555	-0.00029056	0.11037	6.4711E-05	-0.38519	-0.00022585	586.338332713017	49.009	0.78759	49.009	48.762	49.55	0					38	17	3	0	0	0	0.42676	1	3631	3631		49.442	7.0454	1	905290			57919	3001;6144	47769	47814	63485	63485					0.08367034102707294
TRFSNHGTQKM	11	Unmodified	_TRFSNHGTQKM_					0	0	0			REV__tr|A0A553SUJ7|A0A553SUJ7_NIACIGlycosidehydrolasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_00745PE=3SV=1	REV__tr|A0A553SUJ7|A0A553SUJ7_NIACIGlycosidehydrolasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_00745PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.21417236328125	3	436.215544	1305.6248	0.26482	0.00011552	-3.7969	-0.0016563	-3.5321	-0.0015407	436.2140024294141	39.204	2.2798	36.277	35.849	38.129	-2.9264					140	44	5	0	0	0	0.68299	1	1631	1631		35.496	3.8614	1	1076000	+		57920	31087	47770	47815	63486	63486					-0.015784252252387887
TRFTHNIRVI	10	Unmodified	_TRFTHNIRVI_					0	0	0		ENSG00000115616|ENST00000233969|SLC9A2	ENSG00000115616|ENST00000233969|SLC9A2	ENSG00000115616|ENST00000233969|SLC9A2	MULTI-MSMS	OvCa9_classI_Rep4_	4	628.8626708984375	2	628.864746	1255.71494	1.0406	0.00065438	-4.2853	-0.0026949	-3.2447	-0.0020405	628.8619073964604	36.299	1.3962	33.45	32.889	34.285	-2.849					66	27	4	0	0	0	0.72319	1	1253	1253		27.882	1.8189	1	180820			57921	3114	47771	47816	63487	63487					0.09730992165486896
TRGDHVKHY	9	Unmodified	_TRGDHVKHY_					0	0	0		ENSG00000000938|ENST00000374005|FGR	ENSG00000000938|ENST00000374005|FGR	ENSG00000000938|ENST00000374005|FGR	MULTI-MSMS	OvCa99_classI_Rep5	1	556.783203125	2	556.783422	1111.55229	0.103	5.7349E-05	-0.020879	-1.1625E-05	0.082121	4.5724E-05	556.7833361106095	22.771	0.67963	22.771	22.617	23.297	0					38	14	4	0	0	0	0.37135	1	265	265		54.776	10.399	1	956040			57922	801	47772	47817	63488	63488					0.0009760876350810577
TRGELLVLDL	10	Unmodified	_TRGELLVLDL_					0	0	0		ENSG00000092439|ENST00000646667|TRPM7;nc|ENSG00000119121|Q9BX84-6|TRPM6;nc|ENSG00000119121|Q9BX84-5|TRPM6;nc|ENSG00000119121|Q9BX84-4|TRPM6;nc|ENSG00000119121|Q9BX84-3|TRPM6;nc|ENSG00000119121|Q9BX84-2|TRPM6;ENSG00000119121|ENST00000360774|TRPM6;nc|ENSG00000119121|Q9BX84-7|TRPM6	ENSG00000092439|ENST00000646667|TRPM7;nc|ENSG00000119121|Q9BX84-6|TRPM6	ENSG00000092439|ENST00000646667|TRPM7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	565.7991333007812	2	564.834788	1127.65502	1.9921	0.0011252	-4.4334	-0.0025041	-2.4413	-0.0013789	564.8321514233065	35.469	0.94807	32.62	32.391	33.339	-2.849					41	18	3	0	0	0	0.026849	1	1121	1121		40.778	0	1	137320			57923	1894;3341	47773	47818	63489	63489					0.09630256711625407
TRGELSSPSL	10	Unmodified	_TRGELSSPSL_					0	0	0			REV__ENST00000472002.5_1_12:6760363-6762075:-|nuORF	REV__ENST00000472002.5_1_12:6760363-6762075:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	523.7789916992188	2	523.77747	1045.54039	-0.11714	-6.1356E-05	-0.17992	-9.4237E-05	-0.29706	-0.00015559	523.7775021682955	72.743	0.66255	72.743	72.45	73.113	0					62	16	5	0	0	0	0.17251	1	7115	7115		98.582	10.405	1	20421000	+		57924	26300	47774	47819	63490	63490					0.019439472296880922
TRGPVPNLLL	10	Unmodified	_TRGPVPNLLL_					0	0	0		tr|A0A553SRN8|A0A553SRN8_NIACIAlcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_01460PE=4SV=1	tr|A0A553SRN8|A0A553SRN8_NIACIAlcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_01460PE=4SV=1	tr|A0A553SRN8|A0A553SRN8_NIACIAlcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_01460PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3327026367188	2	540.332216	1078.64988	-7.0849	-0.0038282	3.2444	0.0017531	-3.8405	-0.0020751	540.3339144529704	160.11	0.74295	158.5	158.24	158.98	-1.6101					38	17	3	0	0	0	0.71192	1	15843	15843		29.15	2.3535	1	51162			57925	34283	47775	47820	63491	63491					0.11369997639667417
TRGPVPNLLL	10	Unmodified	_TRGPVPNLLL_					0	0	0		tr|A0A553SRN8|A0A553SRN8_NIACIAlcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_01460PE=4SV=1	tr|A0A553SRN8|A0A553SRN8_NIACIAlcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_01460PE=4SV=1	tr|A0A553SRN8|A0A553SRN8_NIACIAlcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_01460PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	540.332216	1078.64988	-6.0872	-0.0032891	1.8576	0.0010037	-4.2296	-0.0022854	540.333153321096	159.65	0.5549	158.31	158.01	158.56	-1.3316	-0.092247	-0.0011645	NaN	29.15	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15606			57926	34283	47775	47820							0.11369997639667417
TRGRAVLVV	9	Unmodified	_TRGRAVLVV_					0	0	0			REV__ENSG00000156599|ENST00000287169|ZDHHC5;REV__ENST00000529480.1_1_11:57457792-57467500:+|nuORF	REV__ENST00000529480.1_1_11:57457792-57467500:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	485.8141174316406	2	485.811451	969.608348	1.4031	0.00068165	3.1456	0.0015282	4.5488	0.0022098	485.8128285577155	147.57	4.5874	147.57	147.11	151.7	0					195	92	4	0	0	0	0.53483	1	17554	17554		39.253	0.44669	1	1725900	+		57927	20488;27192	47776	47821	63492	63492					0.12232861670997863
TRHEADSS	8	Unmodified	_TRHEADSS_					0	0	0		ENST00000459914.1_1_1:154247547-154248174:+|nuORF;nc|ENSG00000143575|O00165-5|HAX1;nc|ENSG00000143575|O00165-3|HAX1;ENSG00000143575|ENST00000328703|HAX1;nc|ENSG00000143575|O00165-2|HAX1	ENST00000459914.1_1_1:154247547-154248174:+|nuORF	ENST00000459914.1_1_1:154247547-154248174:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	451.7262878417969	2	451.701763	901.388973	-0.0082319	-3.7184E-06	1.132	0.00051133	1.1238	0.00050761	451.7022572506617	43.28	0.55142	43.28	43.1	43.651	0					19	12	2	0	0	0	0.028476	1	2876	2876		24.203	0	1	328530			57928	5074	47777	47822	63493	63493					-0.06566614078178645
TRIKTRRYT	9	Unmodified	_TRIKTRRYT_					0	0	0			REV__L1MEc_dup2383|chr2:89575914-89577159:-|1.0505817924982768|0.1474267064561223|2.83|423.0|46|3|sense	REV__L1MEc_dup2383|chr2:89575914-89577159:-|1.0505817924982768|0.1474267064561223|2.83|423.0|46|3|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8544311523438	2	597.856921	1193.69929	-2.4902	-0.0014888	1.4044	0.0008396	-1.0859	-0.00064919	597.8575960796461	144.35	4.0594	144.12	142.06	146.12	-0.22696					210	81	4	0	0	0	0.69123	1	14646	14646		20.947	4.4738	1	136500	+		57929	28442	47778	47823	63494	63494					0.11018705648461946
TRIPKIQK	8	Unmodified	_TRIPKIQK_					0	0	0		nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000109971|ENST00000534624|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF	nc|ENSG00000109971|P11142-2|HSPA8	nc|ENSG00000109971|P11142-2|HSPA8	MULTI-MSMS	OvCa99_classI_Rep5	1	492.3227233886719	2	492.321651	982.62875	-0.63341	-0.00031184	0.31032	0.00015278	-0.32309	-0.00015906	492.3216869517277	55.252	1.6676	55.252	54.632	56.3	0					87	39	3	0	0	0	0.35821	2	4469	4469;4529		96.19	6.6056	1	3479500			57930	2745	47779	47824	63495;63496	63495					0.13674032330789032
TRIPKIQKL	9	Unmodified	_TRIPKIQKL_					0	0	0		nc|ENSG00000109971|P11142-2|HSPA8;ENSG00000109971|ENST00000534624|HSPA8;ENST00000527983.5_1_11:122930124-122932032:-|nuORF;ENSG00000126803|ENST00000247207|HSPA2;ENST00000532091.1_1_11:122929724-122930952:-|nuORF	nc|ENSG00000109971|P11142-2|HSPA8	nc|ENSG00000109971|P11142-2|HSPA8	MULTI-MSMS	OvCa99_classI_Rep5	1	548.8650512695312	2	548.863683	1095.71281	-0.60878	-0.00033413	-0.24074	-0.00013214	-0.84952	-0.00046627	548.8635642545917	55.106	3.5618	55.106	54.632	58.194	0					242	84	6	0	0	0	0.049969	7	4504	4454;4474;4504;4534;4564;4596;4652		118.74	36.503	1	42592000			57931	2745	47780	47825	63497;63498;63499;63500;63501;63502;63503	63499					0.16878563427690096
TRIPKIQQL	9	Unmodified	_TRIPKIQQL_					0	0	0		ENSG00000044574|ENST00000324460|HSPA5;ENST00000509378.1_1_4:165110527-165110881:+|nuORF	ENSG00000044574|ENST00000324460|HSPA5	ENSG00000044574|ENST00000324460|HSPA5	MULTI-MSMS	OvCa99_classI_Rep5	1	548.8466186523438	2	548.84549	1095.67643	-0.081137	-4.4532E-05	-0.42135	-0.00023126	-0.50249	-0.00027579	548.8452919000626	70.78	2.4769	70.78	70.246	72.723	0					171	61	5	0	0	0	0.0078217	4	6826	6766;6796;6826;6901		180.93	61.582	1	35559000			57932	1134	47781	47826	63504;63505;63506;63507	63506					0.1324168653097786
TRIPKVQKL	9	Unmodified	_TRIPKVQKL_					0	0	0		nc|ENSG00000204389|P0DMV8-2|HSPA1A;ENSG00000204389|ENST00000375651|HSPA1A;ENSG00000204388|ENST00000375650|HSPA1B;ENST00000445535.1_1_1:161576981-161578004:+|nuORF;ENSG00000173110|ENST00000309758|HSPA6	nc|ENSG00000204389|P0DMV8-2|HSPA1A	nc|ENSG00000204389|P0DMV8-2|HSPA1A	MULTI-MSMS	OvCa99_classI_Rep5	1	541.856689453125	2	541.855858	1081.69716	-0.44462	-0.00024092	-0.10143	-5.4961E-05	-0.54605	-0.00029588	541.8557696791977	48.366	2.1335	48.366	47.897	50.031	0					143	48	5	0	0	0	0.070405	3	3593	3517;3593;3619		107.01	24.767	1	12685000			57933	8978	47782	47827	63508;63509;63510	63509					0.15958276910646418
TRIPPPLL	8	Unmodified	_TRIPPPLL_					0	0	0			REV__ENSG00000010219|ENST00000543431|DYRK4	REV__ENSG00000010219|ENST00000543431|DYRK4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	453.2561340332031	2	453.792195	905.569838	-0.6416	-0.00029115	0.73914	0.00033541	0.097539	4.4263E-05	453.7923551118131	50.703	1.5349	47.53	46.788	48.323	-3.1734					61	29	3	0	0	0	0.028476	1	2871	2871		8.8223	4.5061	1	124070	+		57934	16474	47783	47828	63511	63511					0.11327556036474107
TRIPPPLL	8	Unmodified	_TRIPPPLL_					0	0	0			REV__ENSG00000010219|ENST00000543431|DYRK4	REV__ENSG00000010219|ENST00000543431|DYRK4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	453.792195	905.569838	0.57401	0.00026048	-0.38177	-0.00017325	0.19224	8.7237E-05	453.7918441502139	50.449	1.1399	47.655	46.983	48.123	-2.794	0.062634	-0.00064677	NaN	8.8223	36	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36653	+		57935	16474	47783	47828							0.11327556036474107
TRIPRVRVL	9	Unmodified	_TRIPRVRVL_					0	0	0		ENSG00000075914|ENST00000265564|EXOSC7;ENST00000461361.5_1_3:45016905-45052828:+|nuORF	ENSG00000075914|ENST00000265564|EXOSC7	ENSG00000075914|ENST00000265564|EXOSC7	MULTI-MSMS	OvCa99_classI_Rep5	1	555.3681030273438	2	555.366924	1108.7193	0.40167	0.00022308	-0.020556	-1.1416E-05	0.38112	0.00021166	555.3668276809369	63.059	1.2732	63.059	62.541	63.814	0					71	31	4	0	0	0	0.40818	1	5665	5665		51.193	19.663	1	2239700			57936	1546	47784	47829	63512	63512					0.16928501379084082
TRISKVKTGK	10	Unmodified	_TRISKVKTGK_					0	0	0			REV__nc|ENSG00000100578|Q9BVV6-3|KIAA0586	REV__nc|ENSG00000100578|Q9BVV6-3|KIAA0586	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.3353881835938	2	559.356222	1116.69789	0.20204	0.00011301	-1.9234	-0.0010759	-1.7214	-0.00096288	559.3564017915306	106.43	0.40307	104.41	104.16	104.56	-2.0161					10	7	2	0	0	0	0.026464	1	9680	9680		60.118	5.3419	1	49205	+		57937	28768	47785	47830	63513	63513					0.14421071559718257
TRISKVKTGK	10	Unmodified	_TRISKVKTGK_					0	0	0			REV__nc|ENSG00000100578|Q9BVV6-3|KIAA0586	REV__nc|ENSG00000100578|Q9BVV6-3|KIAA0586	MULTI-MATCH	OvCa99_classI_Rep5	1		2	559.356222	1116.69789	-1.6373	-0.00091582	3.8206	0.0021371	2.1833	0.0012213	559.3584322840182	104.18	0.7215	104.18	103.94	104.66	0	-0.13146	0.0014898	NaN	60.118	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	238050	+		57938	28768	47785	47830							0.14421071559718257
TRISLWAEL	9	Unmodified	_TRISLWAEL_					0	0	0			REV__HERVH-int_dup82|chr1:53424769-53427698:+|2.2654386177007835|0.0864871400321217|4.71|417.0|148|3|anti-sense	REV__HERVH-int_dup82|chr1:53424769-53427698:+|2.2654386177007835|0.0864871400321217|4.71|417.0|148|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	544.30322265625	2	544.808574	1087.60259	-0.37112	-0.00020219	-1.0626	-0.00057893	-1.4337	-0.00078112	544.8076793315723	78.589	2.5947	76.237	75.253	77.848	-2.3527					128	51	4	0	0	0	0.16562	1	4173	4173		82.241	2.5279	1	2782000	+		57939	15829	47786	47831	63514	63514					0.062297183686723656
TRKELERPK	9	Unmodified	_TRKELERPK_					0	0	0		L1PA15_dup4761|chrX:56137796-56140776:+|1.2704796762244717|0.2808252408673861|2.18|428.0|17|1|sense	L1PA15_dup4761|chrX:56137796-56140776:+|1.2704796762244717|0.2808252408673861|2.18|428.0|17|1|sense	L1PA15_dup4761|chrX:56137796-56140776:+|1.2704796762244717|0.2808252408673861|2.18|428.0|17|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.78173828125	2	578.843479	1155.67241	-0.78711	-0.00045561	0.12013	6.9536E-05	-0.66698	-0.00038608	578.8429138206999	55.406	0.40637	55.406	55.193	55.599	0					16	9	3	0	0	0	0.027462	1	4523	4523		24.519	5.4157	1	238420			57940	14663	47787	47832	63515	63515					0.10079597037270105
TRKIIKAM	8	Unmodified	_TRKIIKAM_					0	0	0		ENSG00000131269|ENST00000373394|ABCB7;nc|ENSG00000131269|O75027-2|ABCB7	ENSG00000131269|ENST00000373394|ABCB7	ENSG00000131269|ENST00000373394|ABCB7	MULTI-MSMS	OvCa9_classI_Rep3	3	480.8005676269531	2	480.80478	959.595007	-4.4906	-0.0021591	-3.3491	-0.0016103	-7.8397	-0.0037694	480.8030459689351	151.04	2.008	150.08	149.7	151.71	-0.95647					103	39	4	0	0	0	0.74971	1	12869	12869		26.796	0	1	1013500			57941	4053	47788	47833	63516	63516					0.1135928756738167
TRKLKKKK	8	Unmodified	_TRKLKKKK_					0	0	0		ENSG00000163064|ENST00000295206|EN1	ENSG00000163064|ENST00000295206|EN1	ENSG00000163064|ENST00000295206|EN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.3114013671875	2	515.366393	1028.71823	0.65987	0.00034007	-1.5502	-0.00079892	-0.89033	-0.00045885	515.365829681481	35.265	0.15037	32.416	32.34	32.491	-2.849					4	2	2	0	0	0	0.028476	1	1117	1117		12.207	5.8942	1	5448			57942	6261	47789	47834	63517	63517					0.20502287010162945
TRKQFLLY	8	Unmodified	_TRKQFLLY_					0	0	0		ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.7767333984375	2	534.813659	1067.61277	-1.5134	-0.00080937	0.76481	0.00040903	-0.74856	-0.00040034	534.8131797077631	75.674	1.6114	73.82	73.167	74.779	-1.854					47	30	2	0	0	0	0.028476	1	6237	6237		52.299	20.344	1	91212			57943	1348	47790	47835	63518	63518					0.08166326093919452
TRKRIRYRFRR	11	Unmodified	_TRKRIRYRFRR_					0	0	0		ENSG00000096968|ENST00000381652|JAK2;JAK2|p.Y913Vfs*12|1|0.15|ENSG00000096968|chr9:5089834-5089835|-/A|frameshift_variant;JAK2|p.C616Vfs*14|1|0.06|ENSG00000096968|chr9:5073766-5073766|A/-|frameshift_variant	ENSG00000096968|ENST00000381652|JAK2	ENSG00000096968|ENST00000381652|JAK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.5547180175781	4	402.751196	1606.97568	0.54088	0.00021784	-0.1752	-7.0564E-05	0.36567	0.00014728	402.75114345417984	37.231	0.37124	37.231	37.114	37.485	0					10	7	2	0	0	0	0.026472	1	2057	2057		2.688	1.4561	1	19510			57944	1952	47791	47836	63519	63519					0.1964699693601233
TRKRRPSPSH	10	Unmodified	_TRKRRPSPSH_					0	0	0			REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	REV__nc|ENSG00000123200|Q5T200-2|ZC3H13	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3499145507812	2	611.349794	1220.68504	-2.0282	-0.0012399	3.8222	0.0023367	1.794	0.0010968	611.3520273138611	126.24	1.2813	124.82	124.48	125.76	-1.4143					74	25	4	0	0	0	0.73378	1	12002	12002		26.693	3.1702	1	434950	+		57945	18630	47792	47837	63520	63520					0.08352053220164635
TRKSSHWSLII	11	Unmodified	_TRKSSHWSLII_					0	0	0			REV__ENST00000501122.2_1_11:65192222-65192513:+|nuORF	REV__ENST00000501122.2_1_11:65192222-65192513:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	443.2435607910156	3	443.254216	1326.74082	0.058772	2.6051E-05	0.69743	0.00030914	0.7562	0.00033519	443.25472687006055	61.574	1.6982	58.116	57.067	58.765	-3.4577					93	34	3	0	0	0	0.025864	1	4276	4276		17.167	0	1	228170	+		57946	26817	47793	47838	63521	63521					0.09051841617133505
TRKVATQL	8	Unmodified	_TRKVATQL_					0	0	0			REV__ENST00000421587.6_2_X:41469209-41485910:-|nuORF	REV__ENST00000421587.6_2_X:41469209-41485910:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	458.78167724609375	2	458.782359	915.550165	-0.42851	-0.00019659	0.5147	0.00023614	0.086191	3.9543E-05	458.7824535477061	41.482	0.65752	41.482	41.24	41.897	0					33	14	4	0	0	0	0.53252	1	2593	2593		74.255	7.8258	1	1207100	+		57947	25606	47794	47839	63522	63522					0.08901180025713984
TRLAPPLCKPV	11	Unmodified	_TRLAPPLCKPV_					0	0	0			REV__ENST00000560079.6_1_15:85345654-85346083:+|nuORF	REV__ENST00000560079.6_1_15:85345654-85346083:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	597.8551025390625	2	597.855001	1193.69545	NaN	NaN	NaN	NaN	NaN	NaN	NaN	150.11	1	148.68	148.18	149.18	-1.4344								0	0	0	0.19474	1	14822	14822		29.17	2.4771	1		+		57948	27608	47795	47840	63523	63523					0.10634899830370159
TRLARPGVTL	10	Unmodified	_TRLARPGVTL_					0	0	0			REV__ENST00000369598.5_1_1:114301647-114301788:-|nuORF	REV__ENST00000369598.5_1_1:114301647-114301788:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	542.3355712890625	2	542.33529	1082.65603	2.1364	0.0011587	-0.43665	-0.00023681	1.6998	0.00092185	542.3348959145654	79.904	0.80797	79.904	79.546	80.354	0					31	19	2	0	0	0	0.6104	1	8166	8166		40.778	0	1	972650	+		57949	24942	47796	47841	63524	63524					0.1180051587118669
TRLATLLFLL	10	Unmodified	_TRLATLLFLL_					0	0	0			REV__ENST00000527039.1_1_11:209766-212514:+|nuORF	REV__ENST00000527039.1_1_11:209766-212514:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.31640625	2	580.873717	1159.73288	1.7617	0.0010233	0.11286	6.5556E-05	1.8745	0.0010889	580.8737843261075	102.87	0.33578	102.87	102.72	103.05	0					11	7	2	0	0	0	0.026782	1	11462	11462		37.812	11.119	1	269720	+		57950	22034	47797	47842	63525	63525					0.15940314367662722
TRLEMEHL	8	Oxidation (M)	_TRLEM(Oxidation (M))EHL_		TRLEM(1)EHL		TRLEM(82)EHL	0	0	1		ENST00000470882.5_1_1:161143802-161144796:-|nuORF	ENST00000470882.5_1_1:161143802-161144796:-|nuORF	ENST00000470882.5_1_1:161143802-161144796:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	522.7628784179688	2	522.760766	1043.50698	-1.0483	-0.000548	1.4072	0.00073564	0.35895	0.00018764	522.7613725793259	59.126	2.2678	59.126	58.932	61.2	0					126	56	5	0	0	0	0.45246	1	5059	5059		82.305	15.876	1	12050000			57951	12371	47798	47843	63526	63526		336			-0.013033778139060814
TRLESAKGLK	10	Unmodified	_TRLESAKGLK_					0	0	0		nc|ENSG00000196358|Q96CW9-2|NTNG2;ENSG00000196358|ENST00000393229|NTNG2	nc|ENSG00000196358|Q96CW9-2|NTNG2	nc|ENSG00000196358|Q96CW9-2|NTNG2	MULTI-MSMS	OvCa9_classI_Rep2	2	551.8323364257812	2	551.83258	1101.65061	-0.25095	-0.00013848	3.0228	0.0016681	2.7719	0.0015296	551.8341547217644	100.17	1.3886	99.337	99.014	100.4	-0.83051					70	27	4	0	0	0	0.30325	1	9172	9172		80.455	3.6805	1	447510			57952	8595	47799	47844	63527	63527					0.10384792288709832
TRLGRRSKSP	10	Unmodified	_TRLGRRSKSP_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.31640625	2	579.34672	1156.67889	2.0237	0.0011724	1.5232	0.00088245	3.5469	0.0020549	579.347176537365	102.84	0.33801	102.84	102.68	103.01	0					9	7	2	0	0	0	0.02706	1	11462	11462		23.523	0	1	148460			57953	8571	47800	47845	63528	63528					0.10681534988634667
TRLIATIMV	9	Unmodified	_TRLIATIMV_					0	0	0		ENSG00000213064|ENST00000271375|SFT2D2	ENSG00000213064|ENST00000271375|SFT2D2	ENSG00000213064|ENST00000271375|SFT2D2	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.7794494628906	2	509.309895	1016.60524	0.10349	5.2707E-05	3.4826	0.0017737	3.5861	0.0018264	509.31153862858383	31.522	0.34696	31.522	31.361	31.708	0					9	6	2	0	0	0	0.027462	1	1319	1319		13.454	2.5885	1	25939			57954	9114	47801	47846	63529	63529					0.09759850501984602
TRLLAHKTAR	10	Unmodified	_TRLLAHKTAR_					0	0	0			REV__ENSG00000178685|ENST00000313028|PARP10	REV__ENSG00000178685|ENST00000313028|PARP10	MULTI-MSMS	OvCa99_classI_Rep5	1	583.8596801757812	2	583.859464	1165.70437	0.37379	0.00021824	-0.022682	-1.3243E-05	0.3511	0.000205	583.859324866827	159.93	1.5367	159.93	159.57	161.11	0					103	30	5	0	0	0	0.59317	1	18774	18774		42.864	3.6114	1	2253700	+		57955	22069	47802	47847	63530	63530					0.1281500951106409
TRLLLEETI	9	Unmodified	_TRLLLEETI_					0	0	0			REV__tr|A0A553SK55|A0A553SK55_NIACIPhenylalanine--tRNAligasealphasubunitOS=NialliacirculansOX=1397GN=pheSPE=3SV=1	REV__tr|A0A553SK55|A0A553SK55_NIACIPhenylalanine--tRNAligasealphasubunitOS=NialliacirculansOX=1397GN=pheSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.3389282226562	2	544.321514	1086.62847	-0.63512	-0.00034571	0.91477	0.00049793	0.27965	0.00015222	544.3217182228985	63.784	1.2095	60.309	59.964	61.173	-3.475					38	24	2	0	0	0	0.027462	1	4498	4498		42.396	3.59	1	51658	+		57956	30079	47803	47848	63531	63531					0.08862567820278855
TRLLPQVS	8	Unmodified	_TRLLPQVS_					0	0	0			REV__ENSG00000110628|ENST00000649076|SLC22A18	REV__ENSG00000110628|ENST00000649076|SLC22A18	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.5808410644531	2	457.276909	912.539266	-0.88151	-0.00040309	0.71932	0.00032893	-0.16218	-7.4163E-05	457.27705102218437	27.728	0.64936	27.728	27.491	28.14	0					27	12	3	0	0	0	0.028476	1	892	892		23.042	0	1	178660	+		57957	17991	47804	47849	63532	63532					0.07949777651435852
TRLLRFAASM	10	Unmodified	_TRLLRFAASM_					0	0	0		nc|ENSG00000198089|A8K8P3-10|SFI1;nc|ENSG00000198089|A8K8P3-3|SFI1;nc|ENSG00000198089|A8K8P3-9|SFI1;nc|ENSG00000198089|A8K8P3-2|SFI1;ENSG00000198089|ENST00000400288|SFI1;ENST00000382162.7_1_22:32002284-32014401:+|nuORF;nc|ENSG00000198089|A8K8P3-4|SFI1	nc|ENSG00000198089|A8K8P3-10|SFI1	nc|ENSG00000198089|A8K8P3-10|SFI1	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.8596801757812	2	583.32915	1164.64375	0.33151	0.00019338	-0.26944	-0.00015717	0.06207	3.6207E-05	583.8311807925004	160.11	0.20152	160.11	160.01	160.21	0					5	3	2	0	0	0	0.026867	1	18774	18774		35.152	0	1	16129			57958	8783	47805	47850	63533	63533					0.06801156136452846
TRLLVLSYK	9	Unmodified	_TRLLVLSYK_					0	0	0		ENST00000527406.1_1_11:9779925-9802076:+|nuORF	ENST00000527406.1_1_11:9779925-9802076:+|nuORF	ENST00000527406.1_1_11:9779925-9802076:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	546.8405151367188	2	546.842416	1091.67028	-7.0439	-0.0038519	3.2968	0.0018028	-3.7471	-0.0020491	546.8440760274939	158.88	1.6198	157.61	157.26	158.88	-1.267					96	31	5	0	0	0	0.48047	2	13737	13701;13737		44.377	1.4413	1	890150			57959	13235	47806	47851	63534;63535	63535					0.12811168299458586
TRLLVLSYK	9	Unmodified	_TRLLVLSYK_					0	0	0		ENST00000527406.1_1_11:9779925-9802076:+|nuORF	ENST00000527406.1_1_11:9779925-9802076:+|nuORF	ENST00000527406.1_1_11:9779925-9802076:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.8405151367188	2	546.842416	1091.67028	-6.4593	-0.0035322	2.5386	0.0013882	-3.9208	-0.0021441	546.8437237604664	159.32	1.8651	157.73	157.41	159.27	-1.5858					118	42	5	0	0	0	0.5811	1	15736	15736		34.173	1.3601	1	864300			57960	13235	47806	47851	63536	63536					0.12811168299458586
TRLMVNLTQP	10	Unmodified	_TRLMVNLTQP_					0	0	0		TIMELESS|p.I83T|1|0.12|ENSG00000111602|chr12:56433776-56433776|A/G|missense_variant	TIMELESS|p.I83T|1|0.12|ENSG00000111602|chr12:56433776-56433776|A/G|missense_variant	TIMELESS|p.I83T|1|0.12|ENSG00000111602|chr12:56433776-56433776|A/G|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	586.8253784179688	2	586.82644	1171.63833	0.76579	0.00044939	-3.4204	-0.0020072	-2.6546	-0.0015578	586.8243055657107	153.39	2.2744	153.39	152.9	155.17	0					137	45	5	0	0	0	0.64697	1	17958	17958		36.447	3.6962	1	2850600			57961	32960	47807	47852	63537	63537					0.059374325540147765
TRLPPIHLH	9	Unmodified	_TRLPPIHLH_					0	0	0		ENSG00000188993|ENST00000682860|LRRC66	ENSG00000188993|ENST00000682860|LRRC66	ENSG00000188993|ENST00000682860|LRRC66	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.7376708984375	2	542.324725	1082.6349	-0.77552	-0.00042058	-0.64041	-0.00034731	-1.4159	-0.00076789	542.3245101054036	53.454	0.25901	53.454	53.26	53.519	0					9	5	2	0	0	0	0.027462	1	4231	4231		26.693	2.1737	1	91061			57962	8524	47808	47853	63538	63538					0.09688550562327691
TRLPRLSWLP	10	Unmodified	_TRLPRLSWLP_					0	0	0		ENST00000561241.1_1_15:63340374-63341172:-|nuORF	ENST00000561241.1_1_15:63340374-63341172:-|nuORF	ENST00000561241.1_1_15:63340374-63341172:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	619.86865234375	2	619.87204	1237.72953	-3.6059	-0.0022352	-0.65337	-0.00040501	-4.2593	-0.0026402	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.73378	1	12918	12918		26.693	5.746	1	664560			57963	13750	47809	47854	63539	63539					0.1201706431365892
TRLSERKV	8	Unmodified	_TRLSERKV_					0	0	0		tr|A0A553STG5|A0A553STG5_NIACIGlycosidehydrolasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_04920PE=3SV=1	tr|A0A553STG5|A0A553STG5_NIACIGlycosidehydrolasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_04920PE=3SV=1	tr|A0A553STG5|A0A553STG5_NIACIGlycosidehydrolasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_04920PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.8029479980469	2	494.79854	987.582528	-0.98355	-0.00048666	2.9711	0.0014701	1.9876	0.00098346	494.8005935175907	51.504	0.99263	48.691	48.203	49.196	-2.8129					61	19	5	0	0	0	0.028476	1	3389	3389		31.955	0	1	167590			57964	34485	47810	47855	63540	63540					0.08823967428713786
TRLVLRRGQRR	11	Unmodified	_TRLVLRRGQRR_					0	0	0		HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|309|2|anti-sense	HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|309|2|anti-sense	HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|309|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	471.3108215332031	3	470.967404	1409.88038	-1.4113	-0.00066469	-3.2739	-0.0015419	-4.6853	-0.0022066	471.3004363943824	34.05	0.34494	31.341	31.168	31.513	-2.7097					10	6	2	0	0	0	0.026277	1	1276	1276		23.378	14.166	1	22694			57965	14454	47811	47856	63541	63541					0.19183643744986512
TRLVMKKRK	9	Unmodified	_TRLVMKKRK_					0	0	0			REV__ENST00000267068.5_2_13:33110518-33110629:-|nuORF	REV__ENST00000267068.5_2_13:33110518-33110629:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.3026123046875	2	580.376435	1158.73832	-0.52632	-0.00030547	-2.4088	-0.001398	-2.9351	-0.0017035	580.3749027985505	43.051	0.89759	43.051	42.839	43.737	0					44	20	4	0	0	0	0.027462	1	2878	2878		39.253	3.6345	1	1661100	+		57966	24046	47812	47857	63542	63542					0.16529714678472374
TRLVSVIVYG	10	Unmodified	_TRLVSVIVYG_					0	0	0			REV__ENST00000265734.8_1_7:92462770-92462977:-|nuORF	REV__ENST00000265734.8_1_7:92462770-92462977:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8289794921875	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.67931	1	11892	11892		32.812	10.853	1	308210	+		57967	24035	47813	47858	63543	63543					0.10094577919812764
TRMGYIIPNLT	11	Unmodified	_TRMGYIIPNLT_					0	0	0			REV__nc|ENSG00000226288|Q8NH67|OR52I2	REV__nc|ENSG00000226288|Q8NH67|OR52I2	MULTI-MSMS	OvCa9_classI_Rep2	2	639.8434448242188	2	639.847373	1277.68019	-5.8439	-0.0037392	0.10905	6.9779E-05	-5.7349	-0.0036694	639.8468923748331	161.98	0.93561	161.75	161.33	162.26	-0.22697					70	17	6	0	0	0	0.68021	1	16508	16508		36.447	0	1	224130	+		57968	23369	47814	47859	63544	63544					0.05245988242540989
TRMQPSAL	8	Unmodified	_TRMQPSAL_					0	0	0		ENST00000543726.1_1_12:53613996-53614059:-|nuORF	ENST00000543726.1_1_12:53613996-53614059:-|nuORF	ENST00000543726.1_1_12:53613996-53614059:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	451.7262878417969	2	452.23947	902.464386	-0.054261	-2.4539E-05	-3.41	-0.0015422	-3.4643	-0.0015667	452.23768726208493	43.3	0.59393	43.3	43.014	43.608	0					27	13	3	0	0	0	0.028476	1	2876	2876		35.618	18.253	1	221960			57969	13498	47815	47860	63545	63545					0.009252718485413425
TRMSCPLFFK	10	Unmodified	_TRMSCPLFFK_					0	0	0		ENST00000444717.1_1_20:33867537-33867791:-|nuORF	ENST00000444717.1_1_20:33867537-33867791:-|nuORF	ENST00000444717.1_1_20:33867537-33867791:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	615.313232421875	2	615.312112	1228.60967	2.3588	0.0014514	0.1709	0.00010516	2.5298	0.0015566	615.3121380084621	127.27	2.1219	126.2	125.86	127.98	-1.0715					127	41	5	0	0	0	0.44722	1	9955	9955		61.691	1.7605	1	1410300			57970	11960	47816	47861	63546	63546					0.0045099165322426416
TRNRVGLL	8	Unmodified	_TRNRVGLL_					0	0	0		nc|ENSG00000115761|Q9BSC4-2|NOL10;nc|ENSG00000115761|Q9BSC4-4|NOL10;ENSG00000115761|ENST00000381685|NOL10;nc|ENSG00000115761|Q9BSC4-3|NOL10	nc|ENSG00000115761|Q9BSC4-2|NOL10	nc|ENSG00000115761|Q9BSC4-2|NOL10	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.2620544433594	2	464.787976	927.561398	2.1567	0.0010024	3.4534	0.0016051	5.6101	0.0026075	464.789561078681	76.861	0.28308	76.861	76.639	76.922	0					9	6	2	0	0	0	0.028476	1	7696	7696		51.335	29.376	1	271960			57971	3126	47817	47862	63547	63547					0.0947200211985546
TRNSSEQEL	9	Unmodified	_TRNSSEQEL_					0	0	0		nc|ENSG00000097033|Q9Y371-3|SH3GLB1;SH3GLB1|p.L313Pfs*3|1|0.3|ENSG00000097033|chr1:86742382-86742383|-/C|frameshift_variant;ENSG00000097033|ENST00000370558|SH3GLB1	nc|ENSG00000097033|Q9Y371-3|SH3GLB1	nc|ENSG00000097033|Q9Y371-3|SH3GLB1	MULTI-MSMS	OvCa99_classI_Rep5	1	532.254638671875	2	532.25436	1062.49417	-0.79999	-0.0004258	0.48554	0.00025843	-0.31445	-0.00016737	532.2545632203056	34.09	0.71325	34.09	33.873	34.586	0					33	14	4	0	0	0	0.14445	1	1614	1614		85.862	3.6213	1	727780			57972	1955	47818	47863	63548	63548					-0.03458117672425942
TRNVFVPLT	9	Unmodified	_TRNVFVPLT_					0	0	0		ENST00000381095.7_2_X:5810728-5810830:-|nuORF	ENST00000381095.7_2_X:5810728-5810830:-|nuORF	ENST00000381095.7_2_X:5810728-5810830:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.2674560546875	2	523.803291	1045.59203	-0.41452	-0.00021713	0.41016	0.00021484	-0.0043615	-2.2846E-06	523.8034408426003	30.806	0.39367	30.806	30.682	31.076	0					17	7	3	0	0	0	0.027462	1	1202	1202		16.473	0	1	198610			57973	11158	47819	47864	63549	63549					0.07105735714230832
TRPDKARRL	9	Unmodified	_TRPDKARRL_					0	0	0		ENSG00000174748|ENST00000307839|RPL15;nc|ENSG00000174748|P61313-2|RPL15	ENSG00000174748|ENST00000307839|RPL15	ENSG00000174748|ENST00000307839|RPL15	MULTI-MSMS	OvCa99_classI_Rep5	1	556.8358154296875	2	556.835988	1111.65742	-0.50597	-0.00028174	0.245	0.00013642	-0.26098	-0.00014532	556.8358835566621	26.286	0.74931	26.286	25.992	26.742	0					33	14	4	0	0	0	0.38969	1	671	671		52.937	6.9645	1	290030			57974	7488	47820	47865	63550	63550					0.1060614995992637
TRPLAMHVIL	10	Unmodified	_TRPLAMHVIL_					0	0	0		ENST00000487716.1_1_9:124513459-124514020:+|nuORF	ENST00000487716.1_1_9:124513459-124514020:+|nuORF	ENST00000487716.1_1_9:124513459-124514020:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8445434570312	2	575.841894	1149.66923	-0.33973	-0.00019563	3.0801	0.0017736	2.7403	0.001578	575.8433458482052	142.38	3.7668	140.93	139.05	142.82	-1.4532					179	72	3	0	0	0	0.71192	1	14102	14102		29.15	2.4566	1	165140			57975	12654	47821	47866	63551	63551					0.10038630658914371
TRPVVNLSL	9	Unmodified	_TRPVVNLSL_					0	0	0			REV__ENST00000228945.8_1_12:15095249-15095351:-|nuORF	REV__ENST00000228945.8_1_12:15095249-15095351:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.7677307128906	2	499.803291	997.59203	0.56575	0.00028276	-1.0249	-0.00051226	-0.45917	-0.00022949	499.80244239536165	67.267	0.84159	63.777	63.393	64.235	-3.4902					29	16	3	0	0	0	0.027102	1	4923	4923		96.034	8.3372	1	54194	+		57976	23779	47822	47867	63552	63552					0.09313735714226823
TRQDHAQQL	9	Unmodified	_TRQDHAQQL_					0	0	0		nc|ENSG00000137497|Q14980-2|NUMA1;ENSG00000137497|ENST00000393695|NUMA1;nc|ENSG00000137497|Q14980-4|NUMA1;nc|ENSG00000137497|Q14980-3|NUMA1;NUMA1|p.K1766Qfs*38|1|0.11|ENSG00000137497|chr11:72007356-72007357|-/G|frameshift_variant;NUMA1|p.F1195Sfs*43|1|0.13|ENSG00000137497|chr11:72013921-72013921|G/-|frameshift_variant;NUMA1|p.A777Pfs*34|1|0.17|ENSG00000137497|chr11:72015174-72015174|C/-|frameshift_variant	nc|ENSG00000137497|Q14980-2|NUMA1	nc|ENSG00000137497|Q14980-2|NUMA1	MULTI-MSMS	OvCa99_classI_Rep5	1	548.7770385742188	2	548.778336	1095.54212	-0.66611	-0.00036555	-0.17987	-9.8711E-05	-0.84599	-0.00046426	548.7783050247202	29.161	0.69894	29.161	28.937	29.636	0					49	13	5	0	0	0	0.045281	2	1007	1007;1030		122.18	27.392	1	5111800			57977	4591	47823	47868	63553;63554	63553					-0.001829989617363026
TRQLWEKP	8	Unmodified	_TRQLWEKP_					0	0	0		tr|A0A7D6VRC2|A0A7D6VRC2_9CLOTN-acetylmuramoyl-L-alanineamidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18830PE=4SV=1	tr|A0A7D6VRC2|A0A7D6VRC2_9CLOTN-acetylmuramoyl-L-alanineamidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18830PE=4SV=1	tr|A0A7D6VRC2|A0A7D6VRC2_9CLOTN-acetylmuramoyl-L-alanineamidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18830PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.2911987304688	2	529.293091	1056.57163	-1.0756	-0.00056928	-4.229	-0.0022384	-5.3045	-0.0028077	529.2909183896861	36.817	1.5855	36.817	36.575	38.161	0					87	34	5	0	0	0	0.6962	1	1984	1984		44.117	2.6902	1	10692000			57978	34914	47824	47869	63555	63555					0.04560565054430299
TRQRIHDYYEH	11	Unmodified	_TRQRIHDYYEH_					0	0	0		ENSG00000138622|ENST00000261917|HCN4	ENSG00000138622|ENST00000261917|HCN4	ENSG00000138622|ENST00000261917|HCN4	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.7723083496094	3	506.579651	1516.71712	-0.19902	-0.00010082	-2.7958	-0.0014163	-2.9948	-0.0015171	506.57808298414267	33.325	0.29774	33.325	33.136	33.434	0					12	5	3	0	0	0	0.026204	1	1534	1534		21.78	12.569	1	37639			57979	4698	47825	47870	63556	63556					-0.020566238873243492
TRRHHRLV	8	Unmodified	_TRRHHRLV_					0	0	0			REV__ENST00000438284.2_1_3:11302203-11302380:+|nuORF	REV__ENST00000438284.2_1_3:11302203-11302380:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.7694091796875	2	537.823215	1073.63188	0.51681	0.00027795	0.89682	0.00048233	1.4136	0.00076028	537.8233898197992	72.106	0.57632	72.106	71.835	72.412	0					20	13	2	0	0	0	0.028476	1	7039	7039		26.796	4.8362	1	629500	+		57980	25807	47826	47871	63557	63557					0.09800720228167847
TRRHQILIAS	10	Unmodified	_TRRHQILIAS_					0	0	0			REV__nc|ENSG00000186496|Q96N95-3|ZNF396	REV__nc|ENSG00000186496|Q96N95-3|ZNF396	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8565673828125	2	597.856921	1193.69929	-0.38237	-0.0002286	-0.55263	-0.00033039	-0.935	-0.00055899	597.8564103488146	145.14	4.0194	143.71	141.51	145.53	-1.4357					229	77	4	0	0	0	0.73378	1	14217	14217		26.693	4.733	1	217250	+		57981	22593	47827	47872	63558	63558					0.11018705648461946
TRRIQSLKK	9	Unmodified	_TRRIQSLKK_					0	0	0		ENST00000508360.5_1_4:89653076-89671014:-|nuORF;ENST00000511573.5_1_4:89649686-89680064:-|nuORF;nc|ENSG00000138640|O94988-6|FAM13A;nc|ENSG00000138640|O94988-3|FAM13A;nc|ENSG00000138640|O94988-5|FAM13A;nc|ENSG00000138640|O94988-1|FAM13A;FAM13A|p.S907Mfs*12|1|0.03|ENSG00000138640|chr4:88732125-88732126|-/A|frameshift_variant;ENSG00000138640|ENST00000264344|FAM13A	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	ENST00000508360.5_1_4:89653076-89671014:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.33349609375	2	565.361839	1128.70913	0.33368	0.00018865	0.47682	0.00026957	0.8105	0.00045823	565.3622737832568	33.014	0.24526	33.014	32.941	33.186	0					5	4	2	0	0	0	0.027462	1	1499	1499		29.15	1.2673	1	19945			57982	4701	47828	47873	63559	63559					0.14991893653836996
TRRKHLEL	8	Unmodified	_TRRKHLEL_					0	0	0		ENSG00000147256|ENST00000276211|ARHGAP36;nc|ENSG00000147256|Q6ZRI8-5|ARHGAP36;nc|ENSG00000147256|Q6ZRI8-2|ARHGAP36;nc|ENSG00000147256|Q6ZRI8-4|ARHGAP36	ENSG00000147256|ENST00000276211|ARHGAP36	ENSG00000147256|ENST00000276211|ARHGAP36	MULTI-MSMS	OvCa9_classI_Rep2	2	526.8190307617188	2	526.819807	1051.62506	-1.9157	-0.0010092	1.5331	0.00080765	-0.38267	-0.0002016	526.8205460719952	63.159	1.6815	60.415	60.056	61.738	-2.7444					83	31	4	0	0	0	0.68714	1	4771	4771		45.952	3.5558	1	544680			57983	5346	47829	47874	63560	63560					0.10131362556944623
TRRKVTSI	8	Unmodified	_TRRKVTSI_					0	0	0		tr|A0A553STU8|A0A553STU8_NIACIFour-carbonacidsugarkinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05650PE=3SV=1	tr|A0A553STU8|A0A553STU8_NIACIFour-carbonacidsugarkinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05650PE=3SV=1	tr|A0A553STU8|A0A553STU8_NIACIFour-carbonacidsugarkinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05650PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	480.8000793457031	2	480.801083	959.587613	-4.4906	-0.0021591	4.3396	0.0020865	-0.15096	-7.2581E-05	480.8030459689351	151.04	2.008	150.08	149.7	151.71	-0.95647					103	39	4	0	0	0	0.7549	1	12863	12863		24.203	4.8428	1	1013500			57984	34537	47830	47875	63561	63561					0.10620271291338668
TRRLQQVL	8	Unmodified	_TRRLQQVL_					0	0	0			REV__chr19:39483651-39485544|290|25.18|0.54|5.53|+|2|None,TIMM50|2	REV__chr19:39483651-39485544|290|25.18|0.54|5.53|+|2|None,TIMM50|2	MULTI-MSMS	OvCa9_classI_Rep2	2	507.3146057128906	2	507.314358	1012.61416	-1.2891	-0.00065398	3.8453	0.0019508	2.5562	0.0012968	507.3161252150664	116.87	1.585	116.74	116.42	118	-0.12869					86	31	4	0	0	0	0.72731	1	11221	11221		37.812	0.65241	1	305710	+		57985	15975	47831	47876	63562	63562					0.10835960182646431
TRRPARLPQ	9	Unmodified	_TRRPARLPQ_					0	0	0		ENST00000450873.6_2_7:66236917-66240338:+|nuORF;ENST00000428370.1_3_7:66038415-66041909:-|nuORF	ENST00000450873.6_2_7:66236917-66240338:+|nuORF	ENST00000450873.6_2_7:66236917-66240338:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.8255004882812	2	547.830706	1093.64686	-4.8131	-0.0026367	-3.0811	-0.0016879	-7.8942	-0.0043247	547.8288597088392	154.99	1.902	153.5	152.83	154.73	-1.4911					109	49	3	0	0	0	0.68424	1	15308	15308		21.96	0	1	64964			57986	11771	47832	47877	63563	63563					0.1037816730549821
TRRPLPPI	8	Unmodified	_TRRPLPPI_					0	0	0			REV__ENSG00000188770|ENST00000367222|OPTC	REV__ENSG00000188770|ENST00000367222|OPTC	MULTI-SECPEP	OvCa9_classI_Rep2	2	474.7475280761719	2	475.300719	948.586885	-1.3068	-0.00062114	1.3815	0.00065663	0.074669	3.549E-05	475.30125479857645	68.063	1.5823	65.402	64.793	66.375	-2.661					43	31	3	0	0	0	0.028476	1	5350	5350		7.6903	4.0059	1	30283	+		57987	22735	47833	47878	63564	63564					0.11053476642268834
TRRPLPPI	8	Unmodified	_TRRPLPPI_					0	0	0			REV__ENSG00000188770|ENST00000367222|OPTC	REV__ENSG00000188770|ENST00000367222|OPTC	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	475.300719	948.586885	0.29527	0.00014034	-0.44666	-0.0002123	-0.15138	-7.1953E-05	475.30032818906284	69.054	0.98534	65.564	65.014	66	-3.4902	0.08076	-0.0011378	NaN	12.959	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37266	+		57988	22735	47833	47878							0.11053476642268834
TRRRGLQLAWR	11	Unmodified	_TRRRGLQLAWR_					0	0	0		ENST00000297205.6_1_7:89783709-89789076:+|nuORF	ENST00000297205.6_1_7:89783709-89789076:+|nuORF	ENST00000297205.6_1_7:89783709-89789076:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	471.31060791015625	3	471.616371	1411.82728	-1.4169	-0.00066823	2.8307	0.001335	1.4138	0.00066675	471.6177580525783	34.071	0.49306	31.362	31.119	31.612	-2.7097					14	9	2	0	0	0	0.025864	1	1282	1282		35.178	11.8	1	18553			57989	10149	47834	47879	63565	63565					0.13784265962362952
TRRRPFWKRR	10	Unmodified	_TRRRPFWKRR_					0	0	0		nc|ENSG00000116698|Q92540-4|SMG7	nc|ENSG00000116698|Q92540-4|SMG7	nc|ENSG00000116698|Q92540-4|SMG7	MULTI-MSMS	OvCa9_classI_Rep3	3	486.9579162597656	3	486.96036	1457.85925	-7.2825	-0.0035463	4.3524	0.0021194	-2.9301	-0.0014268	486.9623381995862	161.08	3.4384	159.71	158.52	161.96	-1.3692					219	70	4	0	0	0	0.85358	1	14071	14071		12.207	5.5471	1	133400			57990	14981	47835	47880	63566	63566					0.14863678436131522
TRRRRPDRRRP	11	Unmodified	_TRRRRPDRRRP_					0	0	0			REV__nc|ENSG00000251359|Q96NR7|WWC2-AS2	REV__nc|ENSG00000251359|Q96NR7|WWC2-AS2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.802001953125	3	507.97344	1520.89849	-1.1859	-0.0006024	-0.69475	-0.00035291	-1.8806	-0.00095532	508.30582329529034	53.904	0.97049	50.657	50.263	51.234	-3.2474					43	18	3	0	0	0	0.026435	1	3379	3379		14.086	10.677	1	70342	+		57991	27801	47836	47881	63567	63567					0.15887778719707057
TRRRRRRRRRQ	11	Unmodified	_TRRRRRRRRRQ_					0	0	0		ENST00000444772.3_1_10:21805118-21806168:-|nuORF	ENST00000444772.3_1_10:21805118-21806168:-|nuORF	ENST00000444772.3_1_10:21805118-21806168:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.8178100585938	3	551.682883	1652.02682	-0.36193	-0.00019967	0.16979	9.3671E-05	-0.19214	-0.000106	552.0173483817886	23.172	0.25492	23.172	23.042	23.297	0					11	4	4	0	0	0	0.026562	1	294	294		0.37141	0	1	17271			57992	11963	47837	47882	63568	63568					0.2268875875345202
TRRRRWGVTPL	11	Unmodified	_TRRRRWGVTPL_					0	0	0			REV__ENST00000447310.5_1_19:58067715-58071064:-|nuORF	REV__ENST00000447310.5_1_19:58067715-58071064:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.60797119140625	3	466.612738	1396.81638	-6.1157	-0.0028537	-4.0461	-0.001888	-10.162	-0.0047416	466.6107876803129	159.36	3.2951	157.77	156.6	159.9	-1.5858					217	83	3	0	0	0	0.72477	1	15762	15762		18.531	5.0231	1	72550	+		57993	25915	47838	47883	63569	63569					0.13384863588066764
TRRTRSQKE	9	Unmodified	_TRRTRSQKE_					0	0	0			REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|49|2|sense	REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|49|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.3026123046875	2	581.325985	1160.63742	-1.0151	-0.00059012	-1.9166	-0.0011141	-2.9317	-0.0017043	581.3263769474127	43.499	0.29499	43.499	43.27	43.565	0					11	6	2	0	0	0	0.027462	1	2878	2878		42.396	0	1	72233	+		57994	28389	47839	47884	63570	63570					0.06352354229352386
TRRVKSGL	8	Unmodified	_TRRVKSGL_					0	0	0		nc|ENSG00000184465|A2RRH5-2|WDR27;nc|ENSG00000184465|A2RRH5|WDR27;ENSG00000184465|ENST00000448612|WDR27	nc|ENSG00000184465|A2RRH5-2|WDR27	nc|ENSG00000184465|A2RRH5-2|WDR27	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.78753662109375	2	458.787976	915.561398	-2.1404	-0.00098197	1.985	0.00091071	-0.15532	-7.1258E-05	458.78877967166295	148.29	2.0994	146.85	146.22	148.32	-1.435					112	42	4	0	0	0	0.75661	1	14594	14594		19.36	0	1	1351300			57995	8161	47840	47885	63571	63571					0.10024002119860143
TRSGAVKIY	9	Unmodified	_TRSGAVKIY_					0	0	0		ENSG00000131899|ENST00000316843|LLGL1;LLGL1|p.D128Wfs*28|1|0.18|ENSG00000131899|chr17:18232792-18232793|GA/-|frameshift_variant;LLGL1|p.G129Ffs*29|1|0.18|ENSG00000131899|chr17:18232793-18232794|-/TTTT|frameshift_variant	ENSG00000131899|ENST00000316843|LLGL1	ENSG00000131899|ENST00000316843|LLGL1	MULTI-MSMS	OvCa99_classI_Rep5	1	497.7879333496094	2	497.787641	993.56073	-0.37317	-0.00018576	0.51988	0.00025879	0.1467	7.3027E-05	497.7877440829859	43.205	1.0252	43.205	42.97	43.995	0					48	23	3	0	0	0	0.3249	1	2836	2836		60.118	1.3363	1	1704400			57996	4096	47841	47886	63572	63572					0.06369162680141471
TRSKDIFDQL	10	Unmodified	_TRSKDIFDQL_					0	0	0		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3;ENST00000476448.1_1_6:52141011-52144220:-|nuORF	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	MULTI-MSMS	OvCa99_classI_Rep5	1	408.2204284667969	3	408.21906	1221.63535	0.64952	0.00026515	-0.55951	-0.0002284	0.090012	3.6745E-05	408.2187366516642	61.731	0.62294	61.731	61.458	62.081	0					37	14	4	0	0	0	0.52162	1	5468	5468		51.528	3.5682	1	1630200			57997	2877	47842	47887	63573	63573					0.03339880700832509
TRSLVGEEAE	10	Unmodified	_TRSLVGEEAE_					0	0	0			REV__ENSG00000164309|ENST00000446378|CMYA5	REV__ENSG00000164309|ENST00000446378|CMYA5	MULTI-MSMS	OvCa99_classI_Rep5	1	545.7720336914062	2	545.772385	1089.53022	-0.02469	-1.3475E-05	-0.32264	-0.00017609	-0.34733	-0.00018956	545.7722273068997	31.782	1.0433	31.782	31.46	32.503	0					39	20	4	0	0	0	0.45822	1	1330	1330		60.118	0	1	1766300	+		57998	20974	47843	47888	63574	63574					-0.010966604955683579
TRSPVNYVVI	10	Unmodified	_TRSPVNYVVI_					0	0	0			REV__tr|A0A7D6VY07|A0A7D6VY07_9CLOT4-hydroxy-tetrahydrodipicolinatesynthaseOS=ClostridiumintestinaleOX=36845GN=dapAPE=3SV=1	REV__tr|A0A7D6VY07|A0A7D6VY07_9CLOT4-hydroxy-tetrahydrodipicolinatesynthaseOS=ClostridiumintestinaleOX=36845GN=dapAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.3125	2	574.327131	1146.63971	-0.60491	-0.00034742	3.3328	0.0019141	2.7279	0.0015667	574.83169465138	65.365	0.11734	65.365	65.309	65.426	0					4	2	2	0	0	0	0.027117	1	6001	6001		23.042	0	1	134930	+		57999	31801	47844	47889	63575	63575					0.07225389914401603
TRSRYVRLV	9	Unmodified	_TRSRYVRLV_					0	0	0		ENSG00000152684|ENST00000274311|PELO	ENSG00000152684|ENST00000274311|PELO	ENSG00000152684|ENST00000274311|PELO	MULTI-MSMS	OvCa99_classI_Rep5	1	575.345947265625	2	575.346189	1148.67783	0.013505	7.7701E-06	-0.29785	-0.00017137	-0.28434	-0.0001636	575.345858373318	45.22	0.68979	45.22	44.977	45.667	0					37	15	3	0	0	0	0.24951	1	3110	3110		68.787	20.827	1	882570			58000	5638	47845	47890	63576	63576					0.10943320619730912
TRSSEKGIL	9	Unmodified	_TRSSEKGIL_					0	0	0			REV__nc|ENSG00000123444|Q9NVX7-1|KBTBD4	REV__nc|ENSG00000123444|Q9NVX7-1|KBTBD4	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.7997741699219	2	495.782556	989.550559	1.2845	0.00063684	-3.3822	-0.0016768	-2.0977	-0.00104	495.78078840754995	147.35	0.4899	147.35	147.11	147.6	0					16	9	2	0	0	0	0.027462	1	17236	17236		54.776	8.8244	1	55452	+		58001	18640	47846	47891	63577	63577					0.055365549549037496
TRSSRRKGR	9	Unmodified	_TRSSRRKGR_					0	0	0		ENST00000553700.5_2_14:31675151-31676803:-|nuORF	ENST00000553700.5_2_14:31675151-31676803:-|nuORF	ENST00000553700.5_2_14:31675151-31676803:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	552.3036499023438	2	552.328862	1102.64317	-0.76012	-0.00041983	-2.9145	-0.0016098	-3.6746	-0.0020296	552.3266314091745	102.83	0.20827	101.3	101.21	101.41	-1.5211					5	3	2	0	0	0	0.027462	1	7086	7086		23.042	0	1	9020.1			58002	13626	47847	47892	63578	63578					0.09595497531654473
TRTALQPA	8	Unmodified	_TRTALQPA_					0	0	0		ENST00000580842.1_1_17:43663677-43664292:+|nuORF	ENST00000580842.1_1_17:43663677-43664292:+|nuORF	ENST00000580842.1_1_17:43663677-43664292:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	429.24554443359375	2	429.245609	856.476666	0.39792	0.00017081	-0.52774	-0.00022653	-0.12982	-5.5725E-05	429.24528663050893	51.942	1.2614	48.768	48.472	49.733	-3.1734					73	24	4	0	0	0	0.70469	1	3083	3083		42.396	0	1	424230			58003	13990	47848	47893	63579	63579					0.04268631583227034
TRTALQPA	8	Unmodified	_TRTALQPA_					0	0	0		ENST00000580842.1_1_17:43663677-43664292:+|nuORF	ENST00000580842.1_1_17:43663677-43664292:+|nuORF	ENST00000580842.1_1_17:43663677-43664292:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	429.245609	856.476666	-1.5686	-0.00067333	1.5505	0.00066555	-0.018142	-7.7874E-06	429.24614773794127	51.736	1.188	48.923	48.651	49.839	-2.8129	0.077301	0.00074792	NaN	42.396	47	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71785			58004	13990	47848	47893							0.04268631583227034
TRTASSLR	8	Unmodified	_TRTASSLR_					0	0	0		ENST00000515599.1_1_5:146086275-146086944:-|nuORF	ENST00000515599.1_1_5:146086275-146086944:-|nuORF	ENST00000515599.1_1_5:146086275-146086944:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	446.2425842285156	2	446.253966	890.493378	1.5456	0.00068975	2.1958	0.00097986	3.7414	0.0016696	446.2541681541047	57.822	0.44976	55.03	54.823	55.273	-2.7921					11	8	2	0	0	0	0.028476	1	4159	4159		19.997	7.7899	1	7926.2			58005	13051	47849	47894	63580	63580					0.04375132469192522
TRTAVYTL	8	Unmodified	_TRTAVYTL_					0	0	0		ENSG00000171631|ENST00000540124|P2RY6;chr11:73264649-73295730|372|15.6|0.75|4.38|+|ENST00000393592|P2RY6,P2RY6;chr11:73264649-73272307|348|10.77|0.63|4.08|+|ENST00000540342|P2RY6,P2RY6	ENSG00000171631|ENST00000540124|P2RY6	ENSG00000171631|ENST00000540124|P2RY6	MULTI-SECPEP	OvCa99_classI_Rep5	1	462.7442626953125	2	462.761092	923.507631	-0.21243	-9.8305E-05	-0.21665	-0.00010026	-0.42908	-0.00019856	462.7608529322143	70.51	0.4756	70.51	70.286	70.761	0					18	11	2	0	0	0	0.028476	1	6775	6775		23.042	0	1	638150			58006	303	47850	47895	63581	63581					0.04281784897466423
TRTLPLSSL	9	Unmodified	_TRTLPLSSL_					0	0	0			REV__ENST00000262958.3_1_19:3163029-3163218:+|nuORF	REV__ENST00000262958.3_1_19:3163029-3163218:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	494.2941589355469	2	494.295299	986.576045	1.7975	0.0008885	-2.2609	-0.0011176	-0.46343	-0.00022907	494.2941466087284	90.898	1.7806	89.662	88.598	90.379	-1.2355					117	34	4	0	0	0	0.46356	1	8034	8034		45.972	0.020292	1	1147000	+		58007	23986	47851	47896	63582	63582					0.08222029477337855
TRTLPLSSL	9	Unmodified	_TRTLPLSSL_					0	0	0			REV__ENST00000262958.3_1_19:3163029-3163218:+|nuORF	REV__ENST00000262958.3_1_19:3163029-3163218:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	494.295654296875	2	494.295299	986.576045	-1.1483	-0.00056758	0.076684	3.7905E-05	-1.0716	-0.00052968	494.2953202394874	91.548	1.6915	89.524	88.624	90.315	-2.0241					95	33	4	0	0	0	0.37135	1	5740	5740		54.776	0	1	2048800	+		58008	23986	47851	47896	63583	63583					0.08222029477337855
TRTLRTFSE	9	Unmodified	_TRTLRTFSE_					0	0	0			REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	REV__nc|ENSG00000205592|Q7Z5P9-2|MUC19	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.8294677734375	2	555.798737	1109.58292	-0.022649	-1.2588E-05	1.303	0.00072423	1.2804	0.00071164	555.7990452345015	61.076	0.77028	61.076	60.772	61.542	0					27	17	2	0	0	0	0.027462	1	5335	5335		23.042	0	1	262600	+		58009	23220	47852	47897	63584	63584					0.03251342357907561
TRVDTILEF	9	Unmodified	_TRVDTILEF_					0	0	0		XPO1-USP34|2|fusion;XPO1-USP34|3|fusion;ENST00000476585.5_1_2:61729332-61753650:-|nuORF;XPO1-USP34|1|fusion;ENSG00000082898|ENST00000401558|XPO1	XPO1-USP34|2|fusion;ENSG00000082898|ENST00000401558|XPO1	XPO1-USP34|2|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	547.298828125	2	547.298039	1092.58152	0.33937	0.00018573	-0.47136	-0.00025797	-0.13199	-7.2239E-05	547.297579565995	113.81	1.1845	113.69	113.37	114.55	-0.11777					43	23	2	0	0	0	0.2422	1	10812	10812		69.628	5.4204	1	185430			58010	36309;1685	47853	47898	63585	63585					0.0389370826915183
TRVIIILL	8	Unmodified	_TRVIIILL_					0	0	0		ENSG00000279408|ENST00000623441|OR4N4C;ENSG00000183706|ENST00000328795|OR4N4	ENSG00000279408|ENST00000623441|OR4N4C	ENSG00000279408|ENST00000623441|OR4N4C	MULTI-SECPEP	OvCa9_classI_Rep2	2	470.8123474121094	2	470.83132	939.648088	0.81682	0.00038458	1.8304	0.00086182	2.6472	0.0012464	470.831865893241	66.175	0.49619	63.479	63.22	63.716	-2.6958					10	9	2	0	0	0	0.028476	1	5109	5109		8.8223	5.138	1	9089.4			58011	8096	47854	47899	63586	63586					0.17584988621706543
TRVKAVRIL	9	Unmodified	_TRVKAVRIL_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;TXNIP|p.E165Rfs*11|1|0.2|ENSG00000265972|chr1:145995010-145995011|-/T|frameshift_variant	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	OvCa99_classI_Rep5	1	528.357177734375	2	528.356025	1054.6975	-0.89156	-0.00047106	0.14519	7.6714E-05	-0.74636	-0.00039435	528.3561270511026	50.179	2.5789	50.179	49.899	52.478	0					154	59	5	0	0	0	0.33652	3	3808	3784;3808;3832		58.782	17.915	1	20953000			58012	9525	47855	47900	63587;63588;63589	63588					0.17233696630501072
TRVLPNAF	8	Unmodified	_TRVLPNAF_					0	0	0		nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;nc|ENSG00000104093|Q8TDJ6-2|DMXL2	nc|ENSG00000104093|Q8TDJ6|DMXL2	nc|ENSG00000104093|Q8TDJ6|DMXL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	460.2591552734375	2	459.263802	916.513051	-0.26882	-0.00012346	-2.6119	-0.0011996	-2.8808	-0.001323	459.2626512250378	58.021	0.70908	54.676	54.24	54.949	-3.3449					15	13	2	0	0	0	0.028476	1	3826	3826		24.203	12.692	1	14214			58013	2352	47856	47901	63590	63590					0.0514550847992723
TRVLRGLG	8	Unmodified	_TRVLRGLG_					0	0	0			REV__ENST00000231061.8_1_5:151066549-151066705:-|nuORF	REV__ENST00000231061.8_1_5:151066549-151066705:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	437.2611389160156	2	436.277244	870.539935	-1.4362	-0.00062656	1.5897	0.00069357	0.15358	6.7005E-05	436.2778170792629	49.908	0.93766	46.766	46.558	47.496	-3.1416					30	17	2	0	0	0	0.028476	1	2917	2917		23.042	0	1	39220	+		58014	23791	47857	47902	63591	63591					0.09948617091140477
TRVLRGLG	8	Unmodified	_TRVLRGLG_					0	0	0			REV__ENST00000231061.8_1_5:151066549-151066705:-|nuORF	REV__ENST00000231061.8_1_5:151066549-151066705:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	436.277244	870.539935	-0.48502	-0.0002116	0.63258	0.00027598	0.14756	6.4376E-05	436.27734547391435	49.593	0.99045	46.833	46.424	47.414	-2.7603	0.033512	-0.00050247	NaN	23.042	28	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19581	+		58015	23791	47857	47902							0.09948617091140477
TRVNDTVL	8	Unmodified	_TRVNDTVL_					0	0	0		ENSG00000108733|ENST00000225873|PEX12	ENSG00000108733|ENST00000225873|PEX12	ENSG00000108733|ENST00000225873|PEX12	MULTI-SECPEP	OvCa99_classI_Rep5	1	459.7478332519531	2	459.256174	916.497795	0.10255	4.7099E-05	-2.3214	-0.0010661	-2.2188	-0.001019	459.25498404682355	70.896	0.38876	70.896	70.761	71.15	0					16	9	2	0	0	0	0.028476	1	6830	6830		29.15	7.1897	1	422110			58016	2671	47858	47903	63592	63592					0.036205968920739906
TRVYYLGI	8	Unmodified	_TRVYYLGI_					0	0	0		nc|ENSG00000089472|Q9BQS7-3|HEPH;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;HEPH|p.R33W|1|0.64|ENSG00000089472|chrX:66170667-66170667|C/T|missense_variant;HEPH|p.A24S|1|0.17|ENSG00000089472|chrX:66170640-66170640|G/T|missense_variant	nc|ENSG00000089472|Q9BQS7-3|HEPH	nc|ENSG00000089472|Q9BQS7-3|HEPH	MULTI-SECPEP	OvCa9_classI_Rep3	3	492.2931823730469	2	492.779285	983.544017	-1.2608	-0.00062132	-2.5758	-0.0012693	-3.8367	-0.0018906	492.7779006224555	83.51	1.2435	81.249	80.367	81.611	-2.261					42	25	3	0	0	0	0.028476	1	4761	4761		35.201	5.3592	1	184620			58017	14913	47859	47904	63593	63593					0.05158661794166619
TRWKFNVQ	8	Unmodified	_TRWKFNVQ_					0	0	0		ENSG00000139597|ENST00000380130|N4BP2L1	ENSG00000139597|ENST00000380130|N4BP2L1	ENSG00000139597|ENST00000380130|N4BP2L1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.8179321289062	2	539.793258	1077.57196	0.19664	0.00010615	2.5177	0.001359	2.7143	0.0014652	540.2960533633615	71.799	0.65829	71.799	71.507	72.165	0					26	15	3	0	0	0	0.028476	1	6923	6923		68.485	0	1	233260			58018	4786	47860	47905	63594	63594					0.03627984774266224
TRYELAFE	8	Unmodified	_TRYELAFE_					0	0	0			REV__nc|ENSG00000134775|Q2V2M9-2|FHOD3;REV__ENSG00000135723|ENST00000258201|FHOD1	REV__nc|ENSG00000134775|Q2V2M9-2|FHOD3	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.3119506835938	2	514.756007	1027.49746	-2.1137	-0.001088	-1.8307	-0.00094234	-3.9443	-0.0020304	514.7549325618891	145.56	1.1409	145.33	145.03	146.17	-0.22696					42	22	3	0	0	0	0.028476	1	14634	14634		26.796	6.3143	1	41962	+		58019	19233;19315	47861	47906	63595	63595					-0.015188228277793314
TRYMKKKKTL	10	Unmodified	_TRYMKKKKTL_					0	0	0			REV__ENST00000499247.2_1_17:48940312-48940357:-|nuORF	REV__ENST00000499247.2_1_17:48940312-48940357:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	432.2220153808594	3	432.932197	1295.77476	-1.608	-0.00069617	-2.9788	-0.0012896	-4.5868	-0.0019858	432.9306512838174	63.357	0.41672	60.613	60.374	60.79	-2.7444					13	7	2	0	0	0	0.026803	1	4770	4770		32.751	0	1	43178	+		58020	26805	47862	47907	63596	63596					0.13870546784528415
TRYMPCPF	8	Unmodified	_TRYMPCPF_					0	0	0			REV__L1PA15_dup4761|chrX:56137796-56140776:+|1.2704796762244717|0.2808252408673861|2.18|428.0|111|1|anti-sense	REV__L1PA15_dup4761|chrX:56137796-56140776:+|1.2704796762244717|0.2808252408673861|2.18|428.0|111|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	507.7316589355469	2	507.730423	1013.44629	0.87453	0.00044403	1.4644	0.0007435	2.3389	0.0011875	507.73107539480856	64.609	1.4672	61.616	61.09	62.557	-2.9933					46	28	2	0	0	0	0.71369	1	2510	2510		40.573	1.7665	1	54457	+		58021	28475	47863	47908	63597	63597					-0.05989186397812318
TRYQGVNLY	9	Unmodified	_TRYQGVNLY_					0	0	0		ENSG00000070756|ENST00000318607|PABPC1;nc|ENSG00000070756|P11940-2|PABPC1	ENSG00000070756|ENST00000318607|PABPC1	ENSG00000070756|ENST00000318607|PABPC1	MULTI-MSMS	OvCa99_classI_Rep5	1	557.2894287109375	2	557.288005	1112.56146	1.0286	0.00057321	-0.32237	-0.00017965	0.70621	0.00039356	557.2877068725134	74.402	0.94904	74.402	74.056	75.005	0					61	23	4	0	0	0	0.16562	1	7350	7350		82.241	13.454	1	4012500			58022	1433	47864	47909	63598	63598					0.009679573292032728
TRYRPVTL	8	Unmodified	_TRYRPVTL_					0	0	0			REV__ENSG00000277363|ENST00000617146|SRCIN1	REV__ENSG00000277363|ENST00000617146|SRCIN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.7825622558594	2	503.295633	1004.57671	0.6491	0.00032669	3.275	0.0016483	3.9241	0.001975	503.2974465663383	74.39	0.58848	74.39	74.214	74.802	0					22	14	2	0	0	0	0.028476	1	7362	7362		36.447	4.9169	1	662190	+		58023	23631	47865	47910	63599	63599					0.07460868917041807
TSAAIYHVL	9	Unmodified	_TSAAIYHVL_					0	0	0		ENST00000534472.5_1_11:125465789-125479519:+|nuORF;ENSG00000134910|ENST00000392708|STT3A;nc|ENSG00000134910|P46977-2|STT3A	ENST00000534472.5_1_11:125465789-125479519:+|nuORF	ENST00000534472.5_1_11:125465789-125479519:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.7673034667969	2	487.768917	973.523281	0.75265	0.00036712	-0.81703	-0.00039852	-0.064381	-3.1403E-05	487.76834826513533	89.696	1.8129	87.121	86.656	88.469	-2.575					69	35	3	0	0	0	0.027215	3	7701	7701;7712;7726		138.48	61.705	1	372800			58024	4347	47866	47911	63600;63601;63602	63600					0.03546071414530161
TSAALYLKEIL	11	Unmodified	_TSAALYLKEIL_					0	0	0		tr|A0A7D6VSA8|A0A7D6VSA8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_04145PE=4SV=1	tr|A0A7D6VSA8|A0A7D6VSA8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_04145PE=4SV=1	tr|A0A7D6VSA8|A0A7D6VSA8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_04145PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	611.356201171875	2	611.358096	1220.70164	-3.1571	-0.0019301	-0.12375	-7.5658E-05	-3.2809	-0.0020058	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.70865	1	12683	12683		26.693	0	1	666990			58025	35007	47867	47912	63603	63603					0.1001169654291516
TSAHLTVKK	9	Unmodified	_TSAHLTVKK_					0	0	0		ENST00000425806.2_1_1:101406941-101407361:-|nuORF	ENST00000425806.2_1_1:101406941-101407361:-|nuORF	ENST00000425806.2_1_1:101406941-101407361:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.7674255371094	2	492.795466	983.57638	0.25791	0.0001271	-1.2371	-0.00060961	-0.97915	-0.00048252	492.7947536119146	39.931	1.2386	37.221	36.953	38.192	-2.7097					36	24	3	0	0	0	0.027462	1	1968	1968		29.15	0	1	38887			58026	11727	47868	47913	63604	63604					0.08393449197171776
TSAHPGLEL	9	Unmodified	_TSAHPGLEL_					0	0	0		nc|ENSG00000137491|O94956-3|SLCO2B1;ENSG00000137491|ENST00000289575|SLCO2B1;ENST00000531756.5_1_11:74862426-74914042:+|nuORF;nc|ENSG00000137491|O94956-2|SLCO2B1;nc|ENSG00000137491|O94956-4|SLCO2B1;ENST00000528108.1_1_11:74907538-74911433:+|nuORF	nc|ENSG00000137491|O94956-3|SLCO2B1	nc|ENSG00000137491|O94956-3|SLCO2B1	MULTI-MSMS	OvCa99_classI_Rep5	1	462.7442626953125	2	462.742899	923.471246	-0.29873	-0.00013824	0.14562	6.7386E-05	-0.15311	-7.085E-05	462.7428609274206	70.442	1.2323	70.442	69.798	71.031	0					67	30	4	0	0	0	0.023304	1	6775	6775		143.11	63.168	1	3992700			58027	4588	47869	47914	63605	63605					0.006449080007655539
TSALQRSI	8	Unmodified	_TSALQRSI_					0	0	0			REV__RIN3|p.L691Dfs*13|1|0.14|ENSG00000100599|chr14:92659203-92659204|-/AGATAAGATGATGGCGTATATGTTTTCAGGAATAG|frameshift_variant	REV__RIN3|p.L691Dfs*13|1|0.14|ENSG00000100599|chr14:92659203-92659204|-/AGATAAGATGATGGCGTATATGTTTTCAGGAATAG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	438.2509765625	2	438.250892	874.48723	0.8337	0.00036537	-0.71804	-0.00031468	0.11567	5.069E-05	438.2504606921411	40.369	1.2824	37.66	37.402	38.684	-2.7097					65	25	5	0	0	0	0.64026	1	2039	2039		55.504	0	1	308830	+		58028	17435	47870	47915	63606	63606					0.04496614237655194
TSAPAPRAE	9	Unmodified	_TSAPAPRAE_					0	0	0		ENST00000480399.1_1_1:49224892-49242626:-|nuORF	ENST00000480399.1_1_1:49224892-49242626:-|nuORF	ENST00000480399.1_1_1:49224892-49242626:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.2337646484375	2	450.232699	898.450845	-0.47401	-0.00021342	0.45359	0.00020422	-0.020425	-9.196E-06	450.232831869799	43.973	2.6125	40.966	40.641	43.254	-3.0074					107	50	4	0	0	0	0.48047	1	2194	2194		44.377	0	1	2585300			58029	12527	47871	47916	63607	63607					-0.0024426265905503897
TSAPTVKKSMA	11	Unmodified	_TSAPTVKKSMA_					0	0	0			REV__ENST00000533402.5_1_1:201459302-201459740:-|nuORF	REV__ENST00000533402.5_1_1:201459302-201459740:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.803955078125	2	560.805174	1119.59579	1.6271	0.00091251	-4.4862	-0.0025159	-2.8591	-0.0016034	560.802565252688	113.47	2.0685	112.03	111.61	113.67	-1.4461					95	40	3	0	0	0	0.71498	1	10526	10526		24.519	1.4767	1	624400	+		58030	27157	47872	47917	63608	63608					0.04078037425779257
TSARPRLR	8	Unmodified	_TSARPRLR_					0	0	0			REV__chr19:15427533-15432434|397|13.67|0.44|4.97|-|1|WIZ,WIZ|1	REV__chr19:15427533-15432434|397|13.67|0.44|4.97|-|1|WIZ,WIZ|1	MULTI-MSMS	OvCa9_classI_Rep3	3	478.79345703125	2	478.79105	955.567546	-0.51114	-0.00024473	2.3253	0.0011133	1.8142	0.0008686	478.79207532118255	82.802	1.8434	80.505	80.235	82.079	-2.2963					87	38	5	0	0	0	0.67745	1	4725	4725		47.916	0.25827	1	1894200	+		58031	15965	47873	47918	63609	63609					0.08798520351365369
TSASGASRTK	10	Unmodified	_TSASGASRTK_					0	0	0			REV__ENSG00000277363|ENST00000617146|SRCIN1	REV__ENSG00000277363|ENST00000617146|SRCIN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.2772521972656	2	483.254163	964.493772	1.182	0.00057119	-2.5685	-0.0012413	-1.3866	-0.00067007	483.25263195657186	81.578	0.5652	81.578	81.329	81.895	0					21	13	2	0	0	0	0.026523	1	8412	8412		82.241	38.124	1	372200	+		58032	23631	47874	47919	63610	63610					0.010105073983822876
TSAVTITSAL	10	Unmodified	_TSAVTITSAL_					0	0	0			REV__tr|A0A7D6VTK9|A0A7D6VTK9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09445PE=4SV=1	REV__tr|A0A7D6VTK9|A0A7D6VTK9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09445PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	482.2772521972656	2	482.27149	962.528426	1.0388	0.00050097	1.7042	0.00082188	2.743	0.0013228	482.27218309444436	81.471	0.98068	81.471	81.12	82.101	0					56	23	3	0	0	0	0.26627	1	8412	8412		84.916	10.66	1	4569900	+		58033	31612	47875	47920	63611	63611					0.04566330486466086
TSAVTITSAL	10	Unmodified	_TSAVTITSAL_					0	0	0			REV__tr|A0A7D6VTK9|A0A7D6VTK9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09445PE=4SV=1	REV__tr|A0A7D6VTK9|A0A7D6VTK9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09445PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	482.27149	962.528426	-0.054176	-2.6127E-05	0.92011	0.00044374	0.86594	0.00041762	482.2717945259157	82.919	1.3164	81.321	80.906	82.222	-1.5988	0.074324	-0.00011303	NaN	84.916	49	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91138	+		58034	31612	47875	47920							0.04566330486466086
TSAVTITSAL	10	Unmodified	_TSAVTITSAL_					0	0	0			REV__tr|A0A7D6VTK9|A0A7D6VTK9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09445PE=4SV=1	REV__tr|A0A7D6VTK9|A0A7D6VTK9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09445PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	482.27149	962.528426	-1.0001	-0.00048232	1.3143	0.00063385	0.31419	0.00015153	482.2719352660881	83.32	1.0193	81.024	80.781	81.8	-2.2963	-0.22239	0.00026718	NaN	84.916	45	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	261780	+		58035	31612	47875	47920							0.04566330486466086
TSAVTITSAL	10	Unmodified	_TSAVTITSAL_					0	0	0			REV__tr|A0A7D6VTK9|A0A7D6VTK9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09445PE=4SV=1	REV__tr|A0A7D6VTK9|A0A7D6VTK9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09445PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	482.27149	962.528426	0.18048	8.7038E-05	0.52057	0.00025106	0.70105	0.00033809	482.27172373815904	83.832	1.0864	81.169	80.828	81.914	-2.6629	-0.077075	-0.00049841	NaN	84.916	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224700	+		58036	31612	47875	47920							0.04566330486466086
TSDLLSVVK	9	Unmodified	_TSDLLSVVK_					0	0	0			REV__nc|ENSG00000131941|Q8IUC4-2|RHPN2	REV__nc|ENSG00000131941|Q8IUC4-2|RHPN2	MULTI-MSMS	OvCa9_classI_Rep2	2	481.2828674316406	2	481.281857	960.549162	-0.78203	-0.00037638	0.71594	0.00034457	-0.066098	-3.1812E-05	481.2820178551359	74.89	2.1831	72.918	72.376	74.559	-1.9711					93	41	3	0	0	0	0.44568	1	6157	6157		47.657	1.2006	1	492480	+		58037	19043	47876	47921	63612	63612					0.06730920866152701
TSEDSLVL	8	Unmodified	_TSEDSLVL_					0	0	0		ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	ENSG00000136628|ENST00000366923|EPRS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	432.24298095703125	2	432.221465	862.428378	-0.50309	-0.00021745	2.9222	0.001263	2.4191	0.0010456	432.22267468461087	43.535	0.42475	43.535	43.27	43.694	0					21	9	3	0	0	0	0.028476	1	2879	2879		35.201	0	1	150760			58038	4501	47877	47922	63613	63613					-0.0083390684733331
TSEPAVPQT	9	Unmodified	_TSEPAVPQT_					0	0	0			REV__nc|ENSG00000127084|Q5JSP0-2|FGD3	REV__nc|ENSG00000127084|Q5JSP0-2|FGD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.2772521972656	2	465.232364	928.450176	-0.45398	-0.00021121	2.1237	0.00098803	1.6697	0.00077682	465.23303589045935	35.253	0.3775	35.253	35.052	35.429	0					14	7	3	0	0	0	0.027448	1	1751	1751		44.117	1.7207	1	71062	+		58039	18806	47878	47923	63614	63614					-0.01691102098743613
TSEWLPFAL	9	Unmodified	_TSEWLPFAL_					0	0	0			REV__nc|ENSG00000172869|Q9Y485|DMXL1	REV__nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.8153076171875	2	532.276575	1062.5386	1.702	0.00090596	-1.1946	-0.00063587	0.50743	0.00027009	532.7771267393657	118.66	0.66135	118.66	118.34	119.01	0					22	13	3	0	0	0	0.027462	1	13634	13634		29.15	6.1071	1	62732	+		58040	21731	47879	47924	63615	63615					0.009829382117231944
TSFVRSLLLFL	11	Unmodified	_TSFVRSLLLFL_					0	0	0			REV__nc|ENSG00000148482|Q504Y0-2|SLC39A12	REV__nc|ENSG00000148482|Q504Y0-2|SLC39A12	MULTI-MSMS	OvCa9_classI_Rep2	2	432.5956115722656	3	432.595579	1294.76491	-0.63357	-0.00027408	-1.6744	-0.00072432	-2.3079	-0.0009984	432.5948373666812	57.879	2.8015	55.087	54.625	57.426	-2.792					168	54	5	0	0	0	0.68709	1	4146	4146		34.087	1.0471	1	528810	+		58041	20113	47880	47925	63616	63616					0.12931682050816562
TSGAPIIGIR	10	Unmodified	_TSGAPIIGIR_					0	0	0			REV__ENSG00000100422|ENST00000216264|CERK	REV__ENSG00000100422|ENST00000216264|CERK	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.30572509765625	2	492.795466	983.57638	0.84777	0.00041777	1.0777	0.00053109	1.9255	0.00094887	492.7960216437824	139.34	0.80292	139.34	138.98	139.78	0					26	16	2	0	0	0	0.026523	1	16314	16314		16.717	0	1	36527	+		58042	17414	47881	47926	63617	63617					0.08393449197171776
TSGASSPPGAP	11	Unmodified	_TSGASSPPGAP_					0	0	0		nc|ENSG00000198598|Q9ULZ9-2|MMP17;ENSG00000198598|ENST00000360564|MMP17	nc|ENSG00000198598|Q9ULZ9-2|MMP17	nc|ENSG00000198598|Q9ULZ9-2|MMP17	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.7656555175781	2	464.722164	927.429775	0.075461	3.5068E-05	-3.0793	-0.001431	-3.0038	-0.0013959	464.72064163622883	68.612	0.63971	65.122	64.916	65.556	-3.4902					19	12	2	0	0	0	0.025681	1	5141	5141		9.1829	2.8703	1	40060			58043	8833	47882	47927	63618	63618					-0.036842727585622015
TSGGPPPLIM	10	Unmodified	_TSGGPPPLIM_					0	0	0			REV__nc|ENSG00000197448|Q9Y2Q3-2|GSTK1	REV__nc|ENSG00000197448|Q9Y2Q3-2|GSTK1	MULTI-MSMS	OvCa99_classI_Rep5	1	485.25921630859375	2	485.257328	968.500103	-0.37534	-0.00018214	4.069	0.0019745	3.6937	0.0017924	485.25913439681113	29.661	0.79918	29.661	29.337	30.136	0					21	15	3	0	0	0	0.64063	1	1082	1082		37.159	1.9584	1	133520	+		58044	29080	47883	47928	63619	63619					0.014593093055509598
TSGLLDRKTL	10	Unmodified	_TSGLLDRKTL_					0	0	0		ENST00000376717.6_3_9:79227295-79227583:-|nuORF	ENST00000376717.6_3_9:79227295-79227583:-|nuORF	ENST00000376717.6_3_9:79227295-79227583:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	552.3244018554688	2	552.324588	1102.63462	-0.60494	-0.00033412	-0.41558	-0.00022954	-1.0205	-0.00056366	552.3243657213837	29.161	0.94672	29.161	28.789	29.735	0					55	18	5	0	0	0	0.47142	1	1031	1031		58.23	1.7961	1	4186100			58045	11077	47884	47929	63620	63620					0.08741086051804814
TSGPRAAPE	9	Unmodified	_TSGPRAAPE_					0	0	0		ENST00000521393.1_1_14:106188133-106188816:-|nuORF;nc|ENSG00000211891|P01854-1|IGHE;nc|ENSG00000211891|P01854-3|IGHE;nc|ENSG00000211891|P01854|IGHE	ENST00000521393.1_1_14:106188133-106188816:-|nuORF	ENST00000521393.1_1_14:106188133-106188816:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	442.92926025390625	2	443.224874	884.435195	0.31009	0.00013744	0.4273	0.00018939	0.73739	0.00032683	443.2249634859379	36.249	0.81117	36.249	36.029	36.84	0					26	17	3	0	0	0	0.027462	1	1902	1902		20.947	0	1	183420			58046	13122	47885	47930	63621	63621					-0.01164549176098717
TSGPSLLLLL	10	Unmodified	_TSGPSLLLLL_					0	0	0		ENSG00000125730|ENST00000245907|C3;C3|p.Y686Cfs*19|1|0.14|ENSG00000125730|chr19:6707264-6707265|-/AC|frameshift_variant;CON__Q2UVX4	ENSG00000125730|ENST00000245907|C3;CON__Q2UVX4	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	OvCa9_classI_Rep3	3	507.3165588378906	2	507.3157	1012.61685	-0.96298	-0.00048854	0.6153	0.00031215	-0.34769	-0.00017639	507.3158623915197	117.79	1.8845	116.76	116.44	118.32	-1.0324					99	37	4	0	0	0	0.64063	1	8906	8906		37.159	0	1	576140		+	58047	3725;642	47886	47931	63622	63622					0.11104370796977037
TSGPYTRLI	9	Unmodified	_TSGPYTRLI_					0	0	0		ENST00000594295.5_1_19:52592212-52597316:-|nuORF	ENST00000594295.5_1_19:52592212-52597316:-|nuORF	ENST00000594295.5_1_19:52592212-52597316:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	504.2978515625	2	504.279649	1006.54475	-0.61859	-0.00031194	-3.5162	-0.0017732	-4.1348	-0.0020851	504.2755581206955	105.23	0.4498	103.21	102.9	103.35	-2.0161					11	8	2	0	0	0	0.02744	1	9520	9520		52.937	0	1	8125.9			58048	14163	47887	47932	63623	63623					0.04173456443231771
TSGQLLMKH	9	Unmodified	_TSGQLLMKH_					0	0	0		ENST00000515619.1_1_17:48627622-48628299:+|nuORF;ENST00000504265.5_1_17:48627490-48628667:+|nuORF;ENST00000504334.5_1_17:48627490-48633020:+|nuORF;nc|ENSG00000006282|Q8TB22-4|SPATA20;ENST00000503063.5_1_17:48625445-48628667:+|nuORF;nc|ENSG00000006282|Q8TB22-3|SPATA20;nc|ENSG00000006282|Q8TB22|SPATA20;ENSG00000006282|ENST00000006658|SPATA20;ENST00000504271.1_1_17:48628191-48629053:+|nuORF	ENST00000515619.1_1_17:48627622-48628299:+|nuORF	ENST00000515619.1_1_17:48627622-48628299:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.82855224609375	2	507.773677	1013.5328	0.67262	0.00034154	0.65824	0.00033424	1.3309	0.00067577	508.2733958192999	66.101	0.59546	63.406	63.17	63.766	-2.6958					15	11	2	0	0	0	0.027462	1	5087	5087		24.203	3.7209	1	14527			58049	874	47888	47933	63624	63624					0.026575164283940467
TSGRRPLLL	9	Unmodified	_TSGRRPLLL_					0	0	0		LTBP4-RBM39|2|fusion;LTBP4-RBM39|1|fusion;nc|ENSG00000090006|Q8N2S1|LTBP4	LTBP4-RBM39|2|fusion	LTBP4-RBM39|2|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.82855224609375	2	506.816733	1011.61891	0.67261	0.00034089	0.15676	7.945E-05	0.82937	0.00042034	506.81658805931085	65.99	0.79375	63.294	63.022	63.816	-2.6958					23	15	2	0	0	0	0.027462	1	5087	5087		42.474	3.6683	1	19259			58050	14805	47889	47934	63625	63625					0.11356844325428028
TSHGKNLKIHH	11	Unmodified	_TSHGKNLKIHH_					0	0	0		ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	ENSG00000174718|ENST00000312561|RESF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	425.5638427734375	3	424.570427	1270.68945	-0.85323	-0.00036226	1.1317	0.00048051	0.27851	0.00011825	424.90570122257884	71.529	0.29961	68.073	67.874	68.174	-3.4563					8	5	2	0	0	0	0.025988	1	5437	5437		32.034	6.1424	1	15129			58051	7484	47890	47935	63626	63626					0.06493517643070845
TSHGRPWRLL	10	Unmodified	_TSHGRPWRLL_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4|ABCA13	REV__nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-SECPEP	OvCa9_classI_Rep4_	4	408.1912841796875	3	408.231634	1221.67307	1.3031	0.00053197	1.83	0.00074707	3.1331	0.001279	408.23289544970964	56.953	0.86501	53.608	53.273	54.138	-3.3449					24	16	2	0	0	0	0.027021	1	3659	3659		20.837	19.314	1	16710	+		58052	22143	47891	47936	63627	63627					0.07110436477000803
TSHGRPWRLL	10	Unmodified	_TSHGRPWRLL_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4|ABCA13	REV__nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MATCH	OvCa9_classI_Rep2	2		3	408.231634	1221.67307	0.27524	0.00011236	2.7385	0.0011179	3.0137	0.0012303	408.233889757981	56.015	0.69365	53.211	53.027	53.721	-2.804	-0.19849	0.0006943	NaN	20.837	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9149.9	+		58053	22143	47891	47936							0.07110436477000803
TSHVPEELK	9	Unmodified	_TSHVPEELK_					0	0	0		nc|ENSG00000085276|Q03112-5|MECOM;nc|ENSG00000085276|Q03112-6|MECOM;nc|ENSG00000085276|Q03112-1|MECOM;nc|ENSG00000085276|Q03112-4|MECOM;nc|ENSG00000085276|Q03112|MECOM;ENSG00000085276|ENST00000651503|MECOM	nc|ENSG00000085276|Q03112-5|MECOM	nc|ENSG00000085276|Q03112-5|MECOM	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.31201171875	2	520.274564	1038.53457	1.6765	0.00087224	1.8176	0.00094567	3.4941	0.0018179	520.2755590037247	79.873	0.20457	79.873	79.783	79.987	0					8	4	3	0	0	0	0.027462	1	8170	8170		29.15	4.6304	1	728150			58054	1725	47892	47937	63628	63628					0.016848487179913718
TSIAIHFVVL	10	Unmodified	_TSIAIHFVVL_					0	0	0			REV__sp|P09720|US13_HCMVAUncharacterizedproteinHVLF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US13PE=3SV=1	REV__sp|P09720|US13_HCMVAUncharacterizedproteinHVLF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US13PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	550.3256225585938	2	550.329142	1098.64373	-0.25059	-0.0001379	-4.002	-0.0022024	-4.2526	-0.0023403	550.3269039710714	83.949	1.6656	82.403	81.784	83.449	-1.5462					94	32	4	0	0	0	0.50656	1	7223	7223		53.351	2.016	1	662850	+		58055	29381	47893	47938	63629	63629					0.09835479408138781
TSIAIHFVVL	10	Unmodified	_TSIAIHFVVL_					0	0	0			REV__sp|P09720|US13_HCMVAUncharacterizedproteinHVLF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US13PE=3SV=1	REV__sp|P09720|US13_HCMVAUncharacterizedproteinHVLF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US13PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	550.3284912109375	2	550.329142	1098.64373	-1.5395	-0.00084725	-2.9107	-0.0016019	-4.4502	-0.0024491	550.3275660732565	84.687	1.7638	82.426	81.881	83.645	-2.261					107	35	5	0	0	0	0.43592	1	4913	4913		63.306	10.217	1	1227100	+		58056	29381	47893	47938	63630	63630					0.09835479408138781
TSIINITSI	9	Unmodified	_TSIINITSI_					0	0	0			REV__tr|A0A7D6VQS4|A0A7D6VQS4_9CLOTAminoacidpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22470PE=4SV=1	REV__tr|A0A7D6VQS4|A0A7D6VQS4_9CLOTAminoacidpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22470PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.76849365234375	2	481.281857	960.549162	-1.0053	-0.00048385	1.0262	0.00049389	0.020862	1.0041E-05	481.2824735115224	54.368	0.6145	51.121	50.979	51.593	-3.2474					13	11	2	0	0	0	0.02744	1	3405	3405		62.107	5.3864	1	17325	+		58057	31355	47894	47939	63631	63631					0.06730920866152701
TSIKLDSVK	9	Unmodified	_TSIKLDSVK_					0	0	0			REV__ENSG00000122376|ENST00000298786|SHLD2	REV__ENSG00000122376|ENST00000298786|SHLD2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.78277587890625	2	495.795132	989.575711	-1.073	-0.00053197	0.57984	0.00028748	-0.49313	-0.00024449	495.79588099607116	44.477	0.20387	41.439	41.31	41.514	-3.0385					5	3	2	0	0	0	0.027447	1	2193	2193		56.721	3.3696	1	15334	+		58058	18590	47895	47940	63632	63632					0.08050609757481197
TSILAKQR	8	Unmodified	_TSILAKQR_					0	0	0		ENSG00000107021|ENST00000372648|TBC1D13;nc|ENSG00000107021|Q9NVG8-2|TBC1D13	ENSG00000107021|ENST00000372648|TBC1D13	ENSG00000107021|ENST00000372648|TBC1D13	MULTI-SECPEP	OvCa9_classI_Rep4_	4	459.2565612792969	2	458.782359	915.550165	-0.22448	-0.00010299	-0.61071	-0.00028018	-0.83519	-0.00038317	458.78207483834893	47.215	0.50892	44.143	43.911	44.42	-3.0724					17	9	2	0	0	0	0.028476	1	2558	2558		33.516	11.813	1	36219			58059	2582	47896	47941	63633	63633					0.08901180025713984
TSINQRSLLLT	11	Unmodified	_TSINQRSLLLT_					0	0	0			REV__ENSG00000277481|ENST00000620267|PKD1L3	REV__ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MSMS	OvCa9_classI_Rep4_	4	623.364013671875	2	623.361702	1244.70885	0.38758	0.0002416	2.4	0.0014961	2.7876	0.0017377	623.3630605243285	113.2	1.4842	111.76	111.46	112.94	-1.4461					69	29	5	0	0	0	0.68757	1	10485	10485		33.922	1.1711	1	316200	+		58060	23634	47897	47942	63634	63634					0.09628429143322137
TSISEFLPF	9	Unmodified	_TSISEFLPF_					0	0	0		tr|A0A553SK26|A0A553SK26_NIACILong-chainfattyacid--CoAligaseOS=NialliacirculansOX=1397GN=CEQ21_18005PE=4SV=1	tr|A0A553SK26|A0A553SK26_NIACILong-chainfattyacid--CoAligaseOS=NialliacirculansOX=1397GN=CEQ21_18005PE=4SV=1	tr|A0A553SK26|A0A553SK26_NIACILong-chainfattyacid--CoAligaseOS=NialliacirculansOX=1397GN=CEQ21_18005PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.8418579101562	2	520.768583	1039.52261	-0.69276	-0.00036077	1.7835	0.0009288	1.0907	0.00056803	521.2690474875478	102.65	0.49326	101.97	101.64	102.13	-0.68459					11	9	2	0	0	0	0.027462	1	9415	9415		38.806	13.356	1	24007			58061	33570	47898	47943	63635	63635					0.00443231974804803
TSKLPLFFFP	10	Unmodified	_TSKLPLFFFP_					0	0	0		ENST00000382582.7_2_18:74691821-74692112:-|nuORF	ENST00000382582.7_2_18:74691821-74692112:-|nuORF	ENST00000382582.7_2_18:74691821-74692112:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	598.8394775390625	2	598.839342	1195.66413	-0.044318	-2.654E-05	-1.807	-0.0010821	-1.8513	-0.0011087	598.8380395804049	82.48	0.8293	79.797	79.441	80.27	-2.683					45	16	3	0	0	0	0.59703	1	6824	6824		42.396	1.618	1	765930			58062	11179	47899	47944	63636	63636					0.07412650067931281
TSKPELATL	9	Unmodified	_TSKPELATL_					0	0	0			REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1	REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1	MULTI-SECPEP	OvCa9_classI_Rep3	3	479.7884216308594	2	480.274032	958.533512	0.12769	6.1328E-05	0.014329	6.8818E-06	0.14202	6.8209E-05	480.2739976365948	78.863	0.84227	76.523	75.863	76.705	-2.3399					25	16	2	0	0	0	0.027453	1	4152	4152		45.972	19.279	1	348190	+		58063	18785	47900	47945	63637	63637					0.05258634349092972
TSKRLDHLK	9	Unmodified	_TSKRLDHLK_					0	0	0		ENST00000482767.1_1_6:27358807-27358894:+|nuORF	ENST00000482767.1_1_6:27358807-27358894:+|nuORF	ENST00000482767.1_1_6:27358807-27358894:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.3238525390625	2	549.324922	1096.63529	0.69445	0.00038148	-1.3166	-0.00072326	-0.62217	-0.00034178	549.3241630662727	35.315	2.0009	32.466	31.936	33.937	-2.849					105	39	5	0	0	0	0.65371	1	1118	1118		25.574	0	1	1387800			58064	12577	47901	47946	63638	63638					0.09083925491495393
TSKSSSTLVV	10	Unmodified	_TSKSSSTLVV_					0	0	0		tr|A0A7D6ZF65|A0A7D6ZF65_9CLOTGerminationproteaseOS=ClostridiumintestinaleOX=36845GN=gprPE=3SV=1	tr|A0A7D6ZF65|A0A7D6ZF65_9CLOTGerminationproteaseOS=ClostridiumintestinaleOX=36845GN=gprPE=3SV=1	tr|A0A7D6ZF65|A0A7D6ZF65_9CLOTGerminationproteaseOS=ClostridiumintestinaleOX=36845GN=gprPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	504.2978515625	2	504.782222	1007.54989	-1.2464	-0.00062918	-1.9089	-0.00096356	-3.1553	-0.0015927	505.2820772337089	103.54	0.29645	102.88	102.65	102.95	-0.65866					7	5	2	0	0	0	0.02663	1	9537	9537		69.628	21.712	1	7048.7			58065	35501	47902	47947	63639	63639					0.0464171551519712
TSLFAKELVYL	11	Unmodified	_TSLFAKELVYL_					0	0	0			REV__ENSG00000172315|ENST00000372114|TP53RK	REV__ENSG00000172315|ENST00000372114|TP53RK	MULTI-MSMS	OvCa9_classI_Rep3	3	642.3632202148438	2	642.365921	1282.71729	-6.9842	-0.0044864	0.77014	0.00049471	-6.214	-0.0039917	642.3673416053439	164.93	1.6323	163.53	162.84	164.47	-1.4083					217	58	5	0	0	0	0.70865	1	14405	14405		26.693	0	1	189920	+		58066	21689	47903	47948	63640	63640					0.0872398305994011
TSLLFLTT	8	Unmodified	_TSLLFLTT_					0	0	0			REV__ENSG00000214140|ENST00000592014|PRCD	REV__ENSG00000214140|ENST00000592014|PRCD	MULTI-MSMS	OvCa9_classI_Rep3	3	448.2584228515625	2	448.260394	894.506234	-2.462	-0.0011036	-0.24807	-0.0001112	-2.71	-0.0012148	448.2601337945915	142.71	1.2357	141.7	141.38	142.62	-1.0102					68	24	5	0	0	0	0.75241	1	11844	11844		25.45	1.2474	1	329850	+		58067	23285	47904	47949	63641	63641					0.05476150808692637
TSLLHGTEKL	10	Unmodified	_TSLLHGTEKL_					0	0	0		ENST00000471660.5_1_3:87303195-87303396:+|nuORF	ENST00000471660.5_1_3:87303195-87303396:+|nuORF	ENST00000471660.5_1_3:87303195-87303396:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	549.8133544921875	2	549.811313	1097.60807	1.0303	0.00056648	2.6703	0.0014682	3.7006	0.0020347	549.8125885922184	125.67	1.4812	125.43	125.11	126.59	-0.2359					60	29	3	0	0	0	0.64697	1	12265	12265		36.447	0.82846	1	84391			58068	12385	47905	47950	63642	63642					0.06317397160478322
TSLLLAFAL	9	Unmodified	_TSLLLAFAL_					0	0	0		CSHL1|p.K101Nfs*4|1|0.05|ENSG00000204414|chr17:63910426-63910426|C/-|frameshift_variant;nc|ENSG00000213218|P0DML3-3|CSH2;nc|ENSG00000213218|P0DML3-2|CSH2;nc|ENSG00000204414|Q14406-2|CSHL1;ENSG00000213218|ENST00000392886|CSH2;ENSG00000136488|ENST00000316193|CSH1;ENSG00000204414|ENST00000309894|CSHL1	CSHL1|p.K101Nfs*4|1|0.05|ENSG00000204414|chr17:63910426-63910426|C/-|frameshift_variant	CSHL1|p.K101Nfs*4|1|0.05|ENSG00000204414|chr17:63910426-63910426|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	474.7911376953125	2	474.791861	947.569169	-0.69046	-0.00032782	0.40897	0.00019418	-0.28149	-0.00013365	474.79202645509866	104.47	3.1263	103.9	102.78	105.91	-0.57639					85	62	2	0	0	0	0.36502	1	9691	9691		55.504	4.1688	1	447420			58069	686	47906	47951	63643	63643					0.09328716596746744
TSLLNLVRTW	10	Unmodified	_TSLLNLVRTW_					0	0	0			REV__ENST00000392179.4_1_1:161183807-161183942:+|nuORF	REV__ENST00000392179.4_1_1:161183807-161183942:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	601.84521484375	2	601.84823	1201.68191	0.1678	0.00010099	-3.8739	-0.0023315	-3.7061	-0.0022305	601.8460217897825	22.058	0.22156	22.058	21.964	22.185	0					13	6	3	0	0	0	0.818	1	169	169		3.1592	0	1	21616	+		58070	25248	47907	47952	63644	63644					0.0891336532281457
TSMTRVIEV	9	Oxidation (M)	_TSM(Oxidation (M))TRVIEV_		TSM(1)TRVIEV		TSM(71)TRVIEV	0	0	1		ENSG00000163902|ENST00000296255|RPN1;RPN1|p.R263Tfs*3|1|0.4|ENSG00000163902|chr3:128632004-128632005|-/T|frameshift_variant	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.2772216796875	2	526.276249	1050.53795	0.62032	0.00032646	-0.81089	-0.00042675	-0.19056	-0.00010029	526.2754877178278	67.552	1.2758	64.061	63.689	64.965	-3.4902					62	25	4	0	0	0	0.23241	1	4964	4964		70.816	9.8443	1	640540			58071	6376	47908	47953	63645	63645		200			0.014697755003453494
TSMTRVIEV	9	Oxidation (M)	_TSM(Oxidation (M))TRVIEV_					0	0	1		ENSG00000163902|ENST00000296255|RPN1;RPN1|p.R263Tfs*3|1|0.4|ENSG00000163902|chr3:128632004-128632005|-/T|frameshift_variant	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	526.276249	1050.53795	-0.13569	-7.1412E-05	0.038296	2.0154E-05	-0.097397	-5.1258E-05	526.2759163674751	66.835	1.4886	64.174	63.601	65.09	-2.661	0.056299	0.00044329	NaN	70.816	46	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	149680			58072	6376	47908	47953				200			0.014697755003453494
TSNVVNVRVN	10	Unmodified	_TSNVVNVRVN_					0	0	0			REV__nc|ENSG00000091129|Q92823-2|NRCAM	REV__nc|ENSG00000091129|Q92823-2|NRCAM	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.3452758789062	2	551.304187	1100.59382	0.91837	0.0005063	1.3017	0.00071762	2.2201	0.0012239	551.3045657640057	37.057	0.59838	34.164	33.844	34.442	-2.8925					15	11	2	0	0	0	0.026782	1	1299	1299		54.776	8.8041	1	15950	+		58073	17242	47909	47954	63646	63646					0.047547447321903746
TSNVVNVRVN	10	Unmodified	_TSNVVNVRVN_					0	0	0			REV__nc|ENSG00000091129|Q92823-2|NRCAM	REV__nc|ENSG00000091129|Q92823-2|NRCAM	MULTI-MATCH	OvCa9_classI_Rep2	2		2	551.304187	1100.59382	-1.874	-0.0010331	4.0717	0.0022447	2.1977	0.0012116	551.3052574573909	37.08	0.24665	34.37	34.238	34.485	-2.7097	0.10305	0.0024353	NaN	54.776	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6775.7	+		58074	17242	47909	47954							0.047547447321903746
TSPAVARHATR	11	Unmodified	_TSPAVARHATR_					0	0	0			REV__ENST00000483414.1_1_7:73513477-73520224:+|nuORF	REV__ENST00000483414.1_1_7:73513477-73520224:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	583.8237915039062	2	583.823078	1165.6316	-0.17596	-0.00010273	2.1612	0.0012617	1.9852	0.001159	583.8242751435387	106.81	1.1772	106.5	106.23	107.4	-0.30836					69	23	4	0	0	0	0.25285	1	9951	9951		72.879	3.2516	1	455720	+		58075	26524	47910	47955	63647	63647					0.05541255717639615
TSPVIRNIL	9	Unmodified	_TSPVIRNIL_					0	0	0			REV__tr|A0A553SRP9|A0A553SRP9_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_01485PE=4SV=1	REV__tr|A0A553SRP9|A0A553SRP9_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_01485PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	506.8092956542969	2	506.811116	1011.60768	-1.1259	-0.00057063	0.32757	0.00016601	-0.79835	-0.00040461	506.81130069607957	99.678	3.3722	98.848	98.219	101.59	-0.83051					157	66	4	0	0	0	0.24951	1	9135	9135		68.787	7.8149	1	2351400	+		58076	30755	47911	47956	63648	63648					0.10234022231293238
TSQIKHALLRT	11	Unmodified	_TSQIKHALLRT_					0	0	0			REV__GGA1|p.P58T|1|0.17|ENSG00000100083|chr22:37616965-37616965|C/A|missense_variant	REV__GGA1|p.P58T|1|0.17|ENSG00000100083|chr22:37616965-37616965|C/A|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	634.8802490234375	2	634.377686	1266.74082	0.70958	0.00045014	-0.81179	-0.00051498	-0.10221	-6.4838E-05	634.3769097150116	164.24	2.8363	164.24	163	165.84	0					295	106	3	0	0	0	0.72511	1	19090	19090		14.137	1.3254	1	532610	+		58077	28154	47912	47957	63649	63649					0.11811841617122809
TSQPERFD	8	Unmodified	_TSQPERFD_					0	0	0			REV__ENST00000449363.1_1_17:13937714-13972716:-|nuORF	REV__ENST00000449363.1_1_17:13937714-13972716:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	489.29364013671875	2	490.227613	978.440674	-0.23842	-0.00011688	2.6575	0.0013028	2.4191	0.0011859	490.2295872693434	63.03	0.43452	59.555	59.386	59.82	-3.475					15	8	3	0	0	0	0.028476	1	4396	4396		42.396	8.2236	1	23419	+		58078	25945	47913	47958	63650	63650					-0.04940870384291429
TSRPYCVDPN	10	Unmodified	_TSRPYCVDPN_					0	0	0			REV__tr|A0A7D6VQQ7|A0A7D6VQQ7_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23200PE=3SV=1	REV__tr|A0A7D6VQQ7|A0A7D6VQQ7_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23200PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.348388671875	2	576.26113	1150.50771	0.35482	0.00020447	-2.5952	-0.0014955	-2.2404	-0.001291	576.2595234701993	160.38	0.29814	160.38	160.21	160.51	0					7	5	2	0	0	0	0.027033	1	18800	18800		33.922	19.057	1	14473	+		58079	31347	47914	47959	63651	63651					-0.061525831648168605
TSSFRKEL	8	Unmodified	_TSSFRKEL_					0	0	0		ENSG00000144504|ENST00000401804|ANKMY1;nc|ENSG00000144504|Q9P2S6|ANKMY1	ENSG00000144504|ENST00000401804|ANKMY1	ENSG00000144504|ENST00000401804|ANKMY1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.73907470703125	2	484.263999	966.513445	0.22997	0.00011137	-1.5243	-0.00073816	-1.2943	-0.00062679	484.2632275275369	122.55	0.49503	121.18	120.91	121.41	-1.3666					14	9	2	0	0	0	0.028476	1	11589	11589		24.203	0	1	17165			58080	5155	47915	47960	63652	63652					0.028848834091377284
TSSFRKEL	8	Unmodified	_TSSFRKEL_					0	0	0		ENSG00000144504|ENST00000401804|ANKMY1;nc|ENSG00000144504|Q9P2S6|ANKMY1	ENSG00000144504|ENST00000401804|ANKMY1	ENSG00000144504|ENST00000401804|ANKMY1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	484.263999	966.513445	1.0639	0.0005152	-1.6956	-0.0008211	-0.63168	-0.0003059	484.2631371540529	122.21	0.41943	121.18	120.95	121.37	-1.0286	-0.0029997	-7.8647E-05	NaN	24.203	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20492			58081	5155	47915	47960							0.028848834091377284
TSSKVIQSV	9	Unmodified	_TSSKVIQSV_					0	0	0		ENSG00000178950|ENST00000314167|GAK;ENST00000504435.1_1_4:882633-887812:-|nuORF;nc|ENSG00000178950|O14976-2|GAK	ENSG00000178950|ENST00000314167|GAK	ENSG00000178950|ENST00000314167|GAK	MULTI-MSMS	OvCa99_classI_Rep5	1	474.7734680175781	2	474.771657	947.528761	-0.36668	-0.00017409	0.98821	0.00046917	0.62153	0.00029509	474.77162795065306	50.727	1.1681	50.727	50.376	51.544	0					55	26	4	0	0	0	0.075543	1	3859	3859		104.06	21.752	1	2131600			58082	7785	47916	47961	63653	63653					0.05289750206327426
TSSNIDFLGSQ	11	Unmodified	_TSSNIDFLGSQ_					0	0	0			REV__nc|ENSG00000107736|Q9H251-4|CDH23	REV__nc|ENSG00000107736|Q9H251-4|CDH23	MULTI-MSMS	OvCa99_classI_Rep5	1	584.7755737304688	2	584.777667	1167.54078	0.67703	0.00039591	-2.1784	-0.0012739	-1.5014	-0.00087797	584.7762137020322	151.13	0.5097	151.13	150.94	151.45	0					24	9	3	0	0	0	0.36705	1	17697	17697		63.534	3.2399	1	107650	+		58083	17855	47917	47962	63654	63654					-0.03628677841152239
TSSPVRLLL	9	Unmodified	_TSSPVRLLL_					0	0	0		nc|ENSG00000164520|Q8TD07-4|RAET1E;nc|ENSG00000164520|Q8TD07-3|RAET1E;nc|ENSG00000164520|Q8TD07-5|RAET1E;nc|ENSG00000164520|Q8TD07-2|RAET1E;ENSG00000164520|ENST00000357183|RAET1E;nc|ENSG00000164520|Q8TD07-6|RAET1E	nc|ENSG00000164520|Q8TD07-4|RAET1E	nc|ENSG00000164520|Q8TD07-4|RAET1E	MULTI-MSMS	OvCa9_classI_Rep2	2	493.3042907714844	2	493.305667	984.596781	0.12838	6.3329E-05	-0.45903	-0.00022644	-0.33065	-0.00016311	493.3054093149695	105.41	2.5344	104.97	104.5	107.04	-0.43642					97	50	3	0	0	0	0.3249	2	9787	9781;9787		60.118	16.001	1	416870			58084	6463	47918	47963	63655;63656	63656					0.10386619857001733
TSSPVRLLL	9	Unmodified	_TSSPVRLLL_					0	0	0		nc|ENSG00000164520|Q8TD07-4|RAET1E;nc|ENSG00000164520|Q8TD07-3|RAET1E;nc|ENSG00000164520|Q8TD07-5|RAET1E;nc|ENSG00000164520|Q8TD07-2|RAET1E;ENSG00000164520|ENST00000357183|RAET1E;nc|ENSG00000164520|Q8TD07-6|RAET1E	nc|ENSG00000164520|Q8TD07-4|RAET1E	nc|ENSG00000164520|Q8TD07-4|RAET1E	MULTI-MSMS	OvCa9_classI_Rep3	3	493.30572509765625	2	493.305667	984.596781	0.21345	0.00010529	-0.26429	-0.00013037	-0.050842	-2.5081E-05	493.3055378646589	106.33	1.1772	105.06	104.54	105.71	-1.267					66	22	4	0	0	0	0.37135	3	7484	7484;7495;7502		54.776	16.49	1	486830			58085	6463	47918	47963	63657;63658;63659	63657					0.10386619857001733
TSSPVRLLL	9	Unmodified	_TSSPVRLLL_					0	0	0		nc|ENSG00000164520|Q8TD07-4|RAET1E;nc|ENSG00000164520|Q8TD07-3|RAET1E;nc|ENSG00000164520|Q8TD07-5|RAET1E;nc|ENSG00000164520|Q8TD07-2|RAET1E;ENSG00000164520|ENST00000357183|RAET1E;nc|ENSG00000164520|Q8TD07-6|RAET1E	nc|ENSG00000164520|Q8TD07-4|RAET1E	nc|ENSG00000164520|Q8TD07-4|RAET1E	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.30450439453125	2	493.305667	984.596781	-1.1547	-0.00056961	0.70698	0.00034876	-0.4477	-0.00022085	493.3060168322791	106.96	2.167	105.09	104.45	106.61	-1.8785					87	42	4	0	0	0	0.37135	2	9754	9743;9754		54.776	20.604	1	513290			58086	6463	47918	47963	63660;63661	63661					0.10386619857001733
TSSPVRLLL	9	Unmodified	_TSSPVRLLL_					0	0	0		nc|ENSG00000164520|Q8TD07-4|RAET1E;nc|ENSG00000164520|Q8TD07-3|RAET1E;nc|ENSG00000164520|Q8TD07-5|RAET1E;nc|ENSG00000164520|Q8TD07-2|RAET1E;ENSG00000164520|ENST00000357183|RAET1E;nc|ENSG00000164520|Q8TD07-6|RAET1E	nc|ENSG00000164520|Q8TD07-4|RAET1E	nc|ENSG00000164520|Q8TD07-4|RAET1E	MULTI-MATCH	OvCa99_classI_Rep5	1		2	493.305667	984.596781	-0.24841	-0.00012254	-7.8146	-0.003855	-8.063	-0.0039775	493.3018517171163	105.07	0.65652	105.07	104.79	105.44	0	0.024017	-0.0073962	NaN	60.118	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68210			58087	6463	47918	47963							0.10386619857001733
TSSRLVRSL	9	Unmodified	_TSSRLVRSL_					0	0	0			REV__ENST00000437629.6_2_10:88854131-88854368:+|nuORF	REV__ENST00000437629.6_2_10:88854131-88854368:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	509.8038330078125	2	509.803823	1017.59309	-1.31	-0.00066782	1.0243	0.0005222	-0.28565	-0.00014562	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.56889	1	11204	11204		35.618	0	1	99460	+		58088	25796	47919	47964	63662	63662					0.08499950083148633
TSSSHQHVAPQ	11	Unmodified	_TSSSHQHVAPQ_					0	0	0			REV__ENST00000467077.1_1_3:142074330-142089377:-|nuORF	REV__ENST00000467077.1_1_3:142074330-142089377:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.3368530273438	2	589.781076	1177.5476	0.72147	0.00042551	2.1728	0.0012815	2.8942	0.001707	589.7820854340422	141.72	0.80084	141.72	141.13	141.93	0					19	15	2	0	0	0	0.025656	1	16517	16517		40.058	4.9061	1	23235	+		58089	26194	47920	47965	63663	63663					-0.03407320169912964
TSSSRAVVV	9	Unmodified	_TSSSRAVVV_					0	0	0		CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF	CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8	ENSG00000170421|ENST00000692008|KRT8	MULTI-MSMS	OvCa9_classI_Rep2	2	453.2560119628906	2	453.256174	904.497795	0.87584	0.00039698	-0.9165	-0.00041541	-0.040654	-1.8427E-05	453.2556671396332	49.258	2.2776	46.498	46.078	48.356	-2.7603					121	45	5	0	0	0	0.1149	7	3117	3089;3095;3106;3111;3117;3123;3137		93.143	27.34	1	1197000		+	58090	622;610	47921	47966	63664;63665;63666;63667;63668;63669;63670	63668					0.0417259689210141
TSSSRAVVV	9	Unmodified	_TSSSRAVVV_					0	0	0		CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8;CON__P05787;nc|ENSG00000170421|P05787-2|KRT8;ENST00000546583.5_1_12:53291214-53294602:-|nuORF	CON__H-INV:HIT000292931;ENSG00000170421|ENST00000692008|KRT8	ENSG00000170421|ENST00000692008|KRT8	MULTI-MSMS	OvCa9_classI_Rep4_	4	453.25732421875	2	453.256174	904.497795	-1.521	-0.00068941	0.60061	0.00027223	-0.9204	-0.00041718	453.2564512672788	49.418	2.5687	46.276	45.884	48.453	-3.1416					149	49	5	0	0	0	0.16264	8	2785	2773;2785;2797;2809;2821;2833;2845;2859		82.75	21.779	1	5840500		+	58091	622;610	47921	47966	63671;63672;63673;63674;63675;63676;63677;63678	63672					0.0417259689210141
TSTDVSLKI	9	Unmodified	_TSTDVSLKI_					0	0	0		ENSG00000128591|ENST00000325888|FLNC;nc|ENSG00000128591|Q14315-2|FLNC;FLNC|p.I2110Tfs*16|1|0.33|ENSG00000128591|chr7:128853588-128853591|ATCA/-|frameshift_variant	ENSG00000128591|ENST00000325888|FLNC	ENSG00000128591|ENST00000325888|FLNC	MULTI-MSMS	OvCa99_classI_Rep5	1	482.2726135253906	2	482.27149	962.528426	1.0388	0.00050097	1.7042	0.00082188	2.743	0.0013228	482.27218309444436	81.471	0.98068	81.471	81.12	82.101	0					56	23	3	0	0	0	0.42576	1	8382	8382		49.536	0.094497	1	4569900			58092	3890	47922	47967	63679	63679					0.04566330486466086
TSTHVRLL	8	Unmodified	_TSTHVRLL_					0	0	0		tr|A0A7D6VRY9|A0A7D6VRY9_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13950PE=4SV=1	tr|A0A7D6VRY9|A0A7D6VRY9_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13950PE=4SV=1	tr|A0A7D6VRY9|A0A7D6VRY9_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_13950PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	463.773681640625	2	463.774534	925.534515	-0.61933	-0.00028723	0.40303	0.00018691	-0.21631	-0.00010032	463.77457919552603	76.987	2.132	75.198	74.53	76.662	-1.7894					95	40	4	0	0	0	0.47599	2	6401	6389;6401		79.939	5.6842	1	763750			58093	34967	47923	47968	63680;63681	63681					0.0687689350867231
TSTIWLIV	8	Unmodified	_TSTIWLIV_					0	0	0		tr|A0A553SNE8|A0A553SNE8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24310PE=4SV=1	tr|A0A553SNE8|A0A553SNE8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24310PE=4SV=1	tr|A0A553SNE8|A0A553SNE8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24310PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.7751770019531	2	466.776211	931.537869	-0.78309	-0.00036553	-3.4195	-0.0015961	-4.2026	-0.0019617	466.7745267950524	66.221	1.8163	62.731	62.418	64.235	-3.4902					91	36	4	0	0	0	0.65582	1	4809	4809		52.299	7.922	1	1043100			58094	33920	47924	47969	63682	63682					0.06936143562677444
TSTIWLIV	8	Unmodified	_TSTIWLIV_					0	0	0		tr|A0A553SNE8|A0A553SNE8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24310PE=4SV=1	tr|A0A553SNE8|A0A553SNE8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24310PE=4SV=1	tr|A0A553SNE8|A0A553SNE8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24310PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	466.776211	931.537869	0.97678	0.00045594	-5.1315	-0.0023953	-4.1547	-0.0019393	466.7737070959697	65.545	1.9492	62.85	62.314	64.263	-2.6958	0.059262	-0.00083409	NaN	52.299	80	38	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	255360			58095	33920	47924	47969							0.06936143562677444
TSTRRFSL	8	Unmodified	_TSTRRFSL_					0	0	0			REV__tr|A0A7D6VT08|A0A7D6VT08_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14995PE=3SV=1	REV__tr|A0A7D6VT08|A0A7D6VT08_9CLOTInsulinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14995PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	484.2698059082031	2	484.269616	966.524678	-0.97487	-0.0004721	0.71113	0.00034438	-0.26374	-0.00012772	484.26987122252336	49.254	1.4869	46.494	45.779	47.266	-2.7603					73	29	3	0	0	0	0.62474	1	3121	3121		58.782	11.125	1	266680	+		58096	31563	47925	47970	63683	63683					0.04007705503283887
TSTVPQLLI	9	Unmodified	_TSTVPQLLI_					0	0	0		ENSG00000174339|ENST00000307832|OR2Y1	ENSG00000174339|ENST00000307832|OR2Y1	ENSG00000174339|ENST00000307832|OR2Y1	MULTI-MSMS	OvCa9_classI_Rep2	2	486.2912292480469	2	486.292225	970.569897	0.44909	0.00021839	-0.7299	-0.00035494	-0.28081	-0.00013655	486.29178638170987	132.77	2.1161	132.55	132.23	134.34	-0.22696					105	42	3	0	0	0	0.21231	1	13189	13189		74.255	14.137	1	834840			58097	7458	47926	47971	63684	63684					0.08343511245811897
TSVAARKRA	9	Unmodified	_TSVAARKRA_					0	0	0		ENST00000490891.1_1_1:220287805-220307963:+|nuORF;ENSG00000067704|ENST00000366922|IARS2	ENST00000490891.1_1_1:220287805-220307963:+|nuORF	ENST00000490891.1_1_1:220287805-220307963:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.805419921875	2	480.290882	958.567212	-1.1022	-0.00052936	4.0903	0.0019645	2.9882	0.0014352	480.2926843280163	56.129	1.4356	53.325	52.681	54.117	-2.804					58	28	3	0	0	0	0.027441	1	3892	3892		58.782	2.0609	1	51310			58098	1379	47927	47972	63685	63685					0.0862710063150871
TSVAEVMLEI	10	Unmodified	_TSVAEVMLEI_					0	0	0			REV__ENSG00000083097|ENST00000349129|DOP1A	REV__ENSG00000083097|ENST00000349129|DOP1A	MULTI-MSMS	OvCa9_classI_Rep2	2	546.28564453125	2	546.286282	1090.55801	-0.56606	-0.00030923	0.47535	0.00025968	-0.09071	-4.9554E-05	546.2863258210423	137.01	1.2304	136.78	136.4	137.63	-0.22697					54	25	3	0	0	0	0.46756	1	13622	13622		58.782	2.0609	1	145390	+		58099	17095	47928	47973	63686	63686					0.01635526440304602
TSVAKVVRV	9	Unmodified	_TSVAKVVRV_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	OvCa9_classI_Rep2	2	479.8054504394531	2	479.805834	957.597115	-1.1769	-0.00056468	0.97933	0.00046989	-0.19756	-9.4789E-05	479.80618413013457	55.51	2.1832	52.706	52.282	54.465	-2.804					112	43	4	0	0	0	0.083631	7	3861	3851;3856;3861;3867;3873;3879;3885		101.6	29.723	1	873530			58100	6619	47929	47974	63687;63688;63689;63690;63691;63692;63693	63689					0.11662039576845018
TSVAKVVRV	9	Unmodified	_TSVAKVVRV_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.8067932128906	2	479.805834	957.597115	-0.20989	-0.00010071	-0.2938	-0.00014097	-0.50369	-0.00024167	479.8056637673248	56.037	2.7392	52.743	52.26	54.999	-3.2944					141	53	5	0	0	0	0.041116	5	3571	3549;3559;3571;3583;3604		125.81	30.305	1	2188400			58101	6619	47929	47974	63694;63695;63696;63697;63698	63696					0.11662039576845018
TSVKIQPAL	9	Unmodified	_TSVKIQPAL_					0	0	0			REV__chr9:130464167-130476887|355|144.06|0.0|15.18|+|0|ASS1,None|1	REV__chr9:130464167-130476887|355|144.06|0.0|15.18|+|0|ASS1,None|1	MULTI-MSMS	OvCa9_classI_Rep2	2	478.7923278808594	2	478.792392	955.570232	0.14193	6.7955E-05	-1.2477	-0.00059739	-1.1058	-0.00052944	478.7916935444692	82.342	2.8721	80.713	80.198	83.07	-1.6293					121	56	4	0	0	0	0.42676	1	7038	7038		49.442	6.5773	1	897530	+		58102	16121	47930	47975	63699	63699					0.0906693096563913
TSVLHWASL	9	Unmodified	_TSVLHWASL_					0	0	0			REV__ENST00000470594.5_1_X:51809583-51809949:-|nuORF	REV__ENST00000470594.5_1_X:51809583-51809949:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.2765197753906	2	507.274367	1012.53418	-1.7431	-0.00088424	2.066	0.001048	0.32291	0.0001638	507.2753824037973	108.66	0.96454	106.94	106.72	107.68	-1.7256					42	18	3	0	0	0	0.29717	1	9957	9957		63.306	7.8021	1	463130	+		58103	26263	47931	47976	63700	63700					0.028414737887942465
TSVLVKVVGPQ	11	Unmodified	_TSVLVKVVGPQ_					0	0	0		CEACAM20|p.E501Dfs*22|1|0.17|ENSG00000273777|chr19:44512878-44512879|-/TCTGTGGGGTGCTCCTCCTTCGGGATGGGTTGTGAGG|frameshift_variant;nc|ENSG00000273777|Q6UY09-2|CEACAM20;nc|ENSG00000273777|Q6UY09-5|CEACAM20;ENSG00000273777|ENST00000614924|CEACAM20;ZNF234-CEACAM20|2|fusion;ZNF234-CEACAM20|1|fusion	CEACAM20|p.E501Dfs*22|1|0.17|ENSG00000273777|chr19:44512878-44512879|-/TCTGTGGGGTGCTCCTCCTTCGGGATGGGTTGTGAGG|frameshift_variant	CEACAM20|p.E501Dfs*22|1|0.17|ENSG00000273777|chr19:44512878-44512879|-/TCTGTGGGGTGCTCCTCCTTCGGGATGGGTTGTGAGG|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	564.8491821289062	2	563.845156	1125.67576	2.3577	0.0013294	-0.25576	-0.00014421	2.102	0.0011852	563.8449727259887	116.5	3.3735	116.5	116.09	119.47	0					183	72	6	0	0	0	0.5466	1	13307	13307		49.536	0	1	12349000			58104	217	47932	47977	63701	63701					0.11794847091277916
TSVRMYGF	8	Unmodified	_TSVRMYGF_					0	0	0			REV__tr|A0A553SQN9|A0A553SQN9_NIACIRecombinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_08015PE=3SV=1	REV__tr|A0A553SQN9|A0A553SQN9_NIACIRecombinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_08015PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.805419921875	2	480.73402	959.453487	-1.218	-0.00058556	-2.1638	-0.0010402	-3.3819	-0.0016258	480.73276309449517	55.551	0.84509	52.748	52.182	53.027	-2.804					27	16	2	0	0	0	0.028476	1	3892	3892		35.201	0	1	13804	+		58105	30649	47933	47978	63702	63702					-0.027861305257374624
TSYTAHPSVV	10	Unmodified	_TSYTAHPSVV_					0	0	0			REV__ENSG00000135540|ENST00000343505|NHSL1	REV__ENSG00000135540|ENST00000343505|NHSL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.801513671875	2	531.266739	1060.51892	1.2207	0.00064852	3.1239	0.0016596	4.3446	0.0023082	531.7703724841529	145.5	0.65387	145.5	145.27	145.93	0					15	13	2	0	0	0	0.026802	1	17018	17018		26.693	5.746	1	40527	+		58106	19299	47934	47979	63703	63703					-0.008914377990549838
TTAIEDVID	9	Unmodified	_TTAIEDVID_					0	0	0		tr|A0A7D6ZJX1|A0A7D6ZJX1_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10240PE=4SV=1	tr|A0A7D6ZJX1|A0A7D6ZJX1_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10240PE=4SV=1	tr|A0A7D6ZJX1|A0A7D6ZJX1_9CLOTPhagetailproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10240PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	488.2303466796875	2	488.745305	975.476056	0.19171	9.3697E-05	1.7243	0.00084274	1.916	0.00093644	488.7457364098953	45.333	0.60125	45.333	45.023	45.624	0					36	13	4	0	0	0	0.027462	1	3088	3088		37.159	12.956	1	212030			58107	35650	47935	47980	63704	63704					-0.012662526471444835
TTALLSPQN	9	Unmodified	_TTALLSPQN_					0	0	0		ENST00000576617.5_1_17:6978677-6978827:-|nuORF	ENST00000576617.5_1_17:6978677-6978827:-|nuORF	ENST00000576617.5_1_17:6978677-6978827:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.7669372558594	2	472.756007	943.497461	0.098316	4.6479E-05	1.2715	0.00060109	1.3698	0.00064757	472.7560959526356	55.733	0.96013	52.438	52.11	53.07	-3.2944					40	18	3	0	0	0	0.027072	1	3513	3513		69.628	11.816	1	58054			58108	13949	47936	47981	63705	63705					0.023451771722307058
TTANVLQLV	9	Unmodified	_TTANVLQLV_					0	0	0			REV__nc|ENSG00000106976|Q05193-5|DNM1	REV__nc|ENSG00000106976|Q05193-5|DNM1	MULTI-MSMS	OvCa9_classI_Rep2	2	479.78125	2	479.782025	957.549496	0.20049	9.6192E-05	-0.6683	-0.00032064	-0.4678	-0.00022444	479.78176555475227	82.038	1.8634	80.39	79.818	81.681	-1.6485					96	36	3	0	0	0	0.42676	1	7001	7001		49.442	0	1	969300	+		58109	17832	47937	47982	63706	63706					0.0690234058599799
TTARRRVLL	9	Unmodified	_TTARRRVLL_					0	0	0		ENST00000593156.1_1_17:73905693-73910367:-|nuORF	ENST00000593156.1_1_17:73905693-73910367:-|nuORF	ENST00000593156.1_1_17:73905693-73910367:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8296508789062	2	543.348732	1084.68291	1.717	0.00093295	-3.5828	-0.0019467	-1.8658	-0.0010138	543.3469188038933	87.334	0.69952	87.334	87.054	87.754	0					21	16	2	0	0	0	0.027441	1	9294	9294		32.812	0	1	293600			58110	14152	47938	47983	63707	63707					0.1439562448235847
TTATIRILSTG	11	Unmodified	_TTATIRILSTG_					0	0	0		ENST00000563399.5_1_16:30663274-30664201:+|nuORF	ENST00000563399.5_1_16:30663274-30664201:+|nuORF	ENST00000563399.5_1_16:30663274-30664201:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	567.328857421875	2	567.32987	1132.64519	-3.474	-0.0019709	3.3269	0.0018874	-0.14716	-8.3486E-05	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.68399	2	12037	12037;12288		35.152	1.2878	1	458690			58111	13786	47939	47984	63708;63709	63708					0.08417068706239661
TTAVQNVLI	9	Unmodified	_TTAVQNVLI_					0	0	0		ENSG00000187325|ENST00000341864|TAF9B	ENSG00000187325|ENST00000341864|TAF9B	ENSG00000187325|ENST00000341864|TAF9B	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.7834167480469	2	479.782025	957.549496	-0.19778	-9.4889E-05	-0.099704	-4.7836E-05	-0.29748	-0.00014273	479.7819161566244	82.938	1.8719	80.255	79.93	81.802	-2.6829					101	38	4	0	0	0	0.35444	1	6883	6883		56.721	0	1	1442300			58112	8397	47940	47985	63710	63710					0.06902340586009359
TTDNEEPEIL	10	Unmodified	_TTDNEEPEIL_					0	0	0			REV__nc|ENSG00000008277|Q9P0K1-4|ADAM22	REV__nc|ENSG00000008277|Q9P0K1-4|ADAM22	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.8634033203125	2	580.769508	1159.52446	0.27567	0.0001601	-1.0417	-0.00060499	-0.76604	-0.00044489	580.7687609533396	74.46	0.49937	74.46	74.176	74.676	0					19	12	2	0	0	0	0.026494	1	7320	7320		41.427	13.544	1	334450	+		58113	16448	47941	47986	63711	63711					-0.04891803797886496
TTEIKKRA	8	Unmodified	_TTEIKKRA_					0	0	0		nc|ENSG00000166900|Q13277-2|STX3;nc|ENSG00000166900|Q13277-3|STX3;ENSG00000166900|ENST00000337979|STX3	nc|ENSG00000166900|Q13277-2|STX3	nc|ENSG00000166900|Q13277-2|STX3	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.2757873535156	2	473.787641	945.56073	2.0877	0.00098914	4.1394	0.0019612	6.2271	0.0029503	473.7896431035353	106.06	0.26372	106.06	105.88	106.14	0					8	5	2	0	0	0	0.028476	1	11932	11932		18.324	0	1	89417			58114	6732	47942	47987	63712	63712					0.08577162680126094
TTEKKYVDL	9	Unmodified	_TTEKKYVDL_					0	0	0		HEXB-UBA6|1|fusion;nc|ENSG00000033178|A0AVT1-2|UBA6;ENSG00000033178|ENST00000322244|UBA6	HEXB-UBA6|1|fusion	HEXB-UBA6|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.2670288085938	2	548.797872	1095.58119	2.5509	0.0013999	0.58725	0.00032228	3.1382	0.0017222	548.7980967939793	89.303	0.92963	89.303	89.004	89.933	0					59	22	4	0	0	0	0.027462	1	9604	9604		26.693	0	1	3970000			58115	14480	47943	47988	63713	63713					0.03722288549283803
TTEPKFVPN	9	Unmodified	_TTEPKFVPN_					0	0	0		tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1;tr|A0A553SL61|A0A553SL61_NIACIStageIVsporulationproteinAOS=NialliacirculansOX=1397GN=spoIVAPE=4SV=1	tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1	tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.798828125	2	516.771657	1031.52876	-1.7884	-0.00092419	-2.2693	-0.0011727	-4.0577	-0.0020969	516.7702239027333	50.279	1.1398	47.137	46.663	47.803	-3.1416					46	21	3	0	0	0	0.027462	1	2878	2878		32.812	7.3622	1	186410			58116	35041	47944	47989	63714	63714					0.014257502063401262
TTEPKFVPN	9	Unmodified	_TTEPKFVPN_					0	0	0		tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1;tr|A0A553SL61|A0A553SL61_NIACIStageIVsporulationproteinAOS=NialliacirculansOX=1397GN=spoIVAPE=4SV=1	tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1	tr|A0A7D6VSN7|A0A7D6VSN7_9CLOTStageIVsporulationproteinAOS=ClostridiumintestinaleOX=36845GN=spoIVAPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	516.771657	1031.52876	-0.89969	-0.00046493	-4.0296	-0.0020824	-4.9293	-0.0025473	516.7695055389387	50.087	0.69602	47.293	47.033	47.729	-2.794	0.077788	-0.0012775	NaN	32.812	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37854			58117	35041	47944	47989							0.014257502063401262
TTEVTLKYKQ	10	Unmodified	_TTEVTLKYKQ_					0	0	0			REV__tr|A0A553SS85|A0A553SS85_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_02625PE=3SV=1	REV__tr|A0A553SS85|A0A553SS85_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_02625PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	404.2440185546875	3	404.227444	1209.6605	1.5327	0.00061956	0.89355	0.0003612	2.4263	0.00098076	404.5634310144295	21.711	1.2815	20.373	19.595	20.877	-1.3386					55	25	3	0	0	0	0.027115	1	133	133		24.232	0	1	30182	+		58118	30811	47945	47990	63715	63715					0.0640593550340327
TTEYDCVECR	10	Unmodified	_TTEYDCVECR_					0	0	0			REV__ZFHX3|p.N814T|1|0.13|ENSG00000140836|chr16:72957705-72957705|T/G|missense_variant	REV__ZFHX3|p.N814T|1|0.13|ENSG00000140836|chr16:72957705-72957705|T/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	406.2020263671875	3	406.830368	1217.46927	-0.8651	-0.00035195	0.65133	0.00026498	-0.21377	-8.6966E-05	406.8306140969429	49.607	0.62096	46.466	46.301	46.922	-3.1416					25	11	3	0	0	0	0.026975	1	2793	2793		31.634	0	1	52702	+		58119	32766	47946	47991	63716	63716					-0.13076256861677393
TTFFFFFF	8	Unmodified	_TTFFFFFF_					0	0	0		ENST00000531323.1_1_11:62439898-62439997:+|nuORF	ENST00000531323.1_1_11:62439898-62439997:+|nuORF	ENST00000531323.1_1_11:62439898-62439997:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.7808227539062	2	552.265479	1102.51641	-0.36446	-0.00020128	0.019441	1.0737E-05	-0.34502	-0.00019054	552.2655380803969	35.73	0.7845	35.73	35.52	36.304	0					23	16	3	0	0	0	0.028476	1	1898	1898		14.664	0	1	191680			58120	13304	47947	47992	63717	63717					-0.030752414660355498
TTFIEKKY	8	Unmodified	_TTFIEKKY_					0	0	0			REV__ENSG00000101052|ENST00000373030|IFT52	REV__ENSG00000101052|ENST00000373030|IFT52	MULTI-MSMS	OvCa9_classI_Rep2	2	515.2822875976562	2	515.2844	1028.55425	-0.68048	-0.00035064	0.13531	6.9724E-05	-0.54516	-0.00028091	515.2845057821427	103.46	1.5341	102.77	102.48	104.01	-0.68459					81	30	5	0	0	0	0.6962	1	9558	9558		44.117	0	1	483210	+		58121	17468	47948	47993	63718	63718					0.041112247287628634
TTGAWHAWG	9	Unmodified	_TTGAWHAWG_					0	0	0		nc|ENSG00000072121|Q68DK2-3|ZFYVE26;ENST00000394455.6_1_14:68196461-68236507:-|nuORF;ENST00000554523.5_1_14:68228796-68282710:-|nuORF;nc|ENSG00000072121|Q68DK2-5|ZFYVE26;nc|ENSG00000072121|Q68DK2-2|ZFYVE26;ENSG00000072121|ENST00000347230|ZFYVE26	nc|ENSG00000072121|Q68DK2-3|ZFYVE26;ENST00000554523.5_1_14:68228796-68282710:-|nuORF	ENST00000554523.5_1_14:68228796-68282710:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.69708251953125	2	493.727584	985.440614	0.37753	0.0001864	4.356	0.0021507	4.7335	0.0023371	493.73039219057125	45.623	0.42672	45.623	45.373	45.8	0					14	9	2	0	0	0	0.027462	1	3160	3160		18.324	3.6603	1	78155			58122	11264;1465	47949	47994	63719	63719					-0.052688255936232054
TTGGFISVSVN	11	Unmodified	_TTGGFISVSVN_					0	0	0			REV__tr|A0A553SU41|A0A553SU41_NIACIPutativeproline/betainetransporterOS=NialliacirculansOX=1397GN=CEQ21_06300PE=3SV=1	REV__tr|A0A553SU41|A0A553SU41_NIACIPutativeproline/betainetransporterOS=NialliacirculansOX=1397GN=CEQ21_06300PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.2821044921875	2	541.279846	1080.54514	-0.81289	-0.00044	4.2043	0.0022757	3.3914	0.0018357	541.2821119645146	121.84	0.91658	120.49	120.16	121.08	-1.3479					37	16	3	0	0	0	0.68757	1	11492	11492		33.922	2.3918	1	79075	+		58123	31035	47950	47995	63720	63720					0.008088313724556428
TTGLWPAGVQD	11	Unmodified	_TTGLWPAGVQD_					0	0	0		FHOD3|p.D1177Afs*10|1|0.13|ENSG00000134775|chr18:36747008-36747009|-/C|frameshift_variant;nc|ENSG00000134775|Q2V2M9-2|FHOD3;nc|ENSG00000134775|Q2V2M9|FHOD3;nc|ENSG00000134775|Q2V2M9-3|FHOD3;ENSG00000134775|ENST00000590592|FHOD3	FHOD3|p.D1177Afs*10|1|0.13|ENSG00000134775|chr18:36747008-36747009|-/C|frameshift_variant	FHOD3|p.D1177Afs*10|1|0.13|ENSG00000134775|chr18:36747008-36747009|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	572.784423828125	2	572.785296	1143.55604	-0.7014	-0.00040175	0.26416	0.00015131	-0.43724	-0.00025045	572.7852955228963	103.46	2.3476	101.32	100.63	102.98	-2.1388					117	43	3	0	0	0	0.50761	1	9376	9376		53.089	1.5612	1	1167800			58124	4327	47951	47996	63721	63721					-0.00999766253312373
TTGMKKELI	9	Unmodified	_TTGMKKELI_					0	0	0			REV__DNTT|p.K141Efs*25|1|0.07|ENSG00000107447|chr10:96319296-96319297|-/C|frameshift_variant	REV__DNTT|p.K141Efs*25|1|0.07|ENSG00000107447|chr10:96319296-96319297|-/C|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.8054504394531	2	510.791535	1019.56852	0.061032	3.1175E-05	-3.8325	-0.0019576	-3.7715	-0.0019264	510.7893957684132	112.57	1.2056	111.06	110.63	111.84	-1.5111					41	23	3	0	0	0	0.027462	1	10418	10418		27.882	5.9224	1	93954	+		58125	16327	47952	47997	63722	63722					0.05951553885404337
TTGPPRLLL	9	Unmodified	_TTGPPRLLL_					0	0	0		ENSG00000188305|ENST00000342063|PEAK3	ENSG00000188305|ENST00000342063|PEAK3	ENSG00000188305|ENST00000342063|PEAK3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.2769470214844	2	484.300384	966.586216	-1.1003	-0.00053289	1.0458	0.0005065	-0.054506	-2.6397E-05	484.30063961543533	100.22	2.5511	97.891	96.228	98.779	-2.3253					82	49	3	0	0	0	0.027462	1	9040	9040		29.15	8.2026	1	180490			58126	8461	47953	47998	63723	63723					0.10158637202584941
TTGPVRVAIK	10	Unmodified	_TTGPVRVAIK_					0	0	0		ENSG00000198753|ENST00000361971|PLXNB3;nc|ENSG00000198753|Q9ULL4-2|PLXNB3	ENSG00000198753|ENST00000361971|PLXNB3	ENSG00000198753|ENST00000361971|PLXNB3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.2898559570312	2	521.324391	1040.63423	-1.2692	-0.00066169	0.28134	0.00014667	-0.9879	-0.00051502	521.3246026909577	92.827	0.90207	90.319	90.061	90.963	-2.5072					44	17	3	0	0	0	0.026968	1	8049	8049		36.447	7.2972	1	114740			58127	8866	47954	47999	63724	63724					0.11553711122587629
TTIAGVVYK	9	Unmodified	_TTIAGVVYK_					0	0	0		ENST00000498485.5_1_9:127146904-127177393:-|nuORF;nc|ENSG00000136930|Q99436-2|PSMB7;ENSG00000136930|ENST00000259457|PSMB7	ENST00000498485.5_1_9:127146904-127177393:-|nuORF	ENST00000498485.5_1_9:127146904-127177393:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.7547302246094	2	476.279118	950.543683	-0.37815	-0.00018011	-2.5795	-0.0012286	-2.9576	-0.0014087	476.2777484604189	24.65	0.4024	24.65	24.486	24.888	0					13	7	3	0	0	0	0.027462	1	494	494		23.042	5.6775	1	149670			58128	4535	47955	48000	63725	63725					0.06643242074324007
TTIASTRTF	9	Unmodified	_TTIASTRTF_					0	0	0		ENSG00000261272|ENST00000561890|MUC22	ENSG00000261272|ENST00000561890|MUC22	ENSG00000261272|ENST00000561890|MUC22	MULTI-MSMS	OvCa9_classI_Rep3	3	499.2726135253906	2	499.269281	996.52401	-0.72327	-0.00036111	4.4301	0.0022118	3.7069	0.0018507	499.271356214281	89.338	1.5163	87.207	86.846	88.362	-2.1309					90	29	4	0	0	0	0.31747	1	5515	5515		60.972	0.67798	1	2067700			58129	9501	47956	48001	63726	63726					0.025608660635839442
TTIEDRIVLE	10	Unmodified	_TTIEDRIVLE_					0	0	0		ENST00000374452.9_1_1:24294438-24298406:-|nuORF	ENST00000374452.9_1_1:24294438-24298406:-|nuORF	ENST00000374452.9_1_1:24294438-24298406:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	594.8280029296875	2	594.82716	1187.63977	-0.46602	-0.0002772	1.1884	0.00070692	0.72243	0.00042972	594.8280468711656	76.9	1.7487	74.529	74.033	75.781	-2.3715					90	33	4	0	0	0	0.3094	1	3991	3991		79.713	2.395	1	1276600			58130	11035	47957	48002	63727	63727					0.05345345123782863
TTIEDRIVLE	10	Unmodified	_TTIEDRIVLE_					0	0	0		ENST00000374452.9_1_1:24294438-24298406:-|nuORF	ENST00000374452.9_1_1:24294438-24298406:-|nuORF	ENST00000374452.9_1_1:24294438-24298406:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	594.82716	1187.63977	2.1662	0.0012885	-3.02	-0.0017964	-0.85381	-0.00050787	594.8260820055989	74.944	0.24405	74.944	74.761	75.005	0	0.12686	-0.0054193	NaN	79.713	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	162970			58131	11035	47957	48002							0.05345345123782863
TTIFVDVDP	9	Unmodified	_TTIFVDVDP_					0	0	0			REV__tr|A0A7D6W0P1|A0A7D6W0P1_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00240PE=4SV=1	REV__tr|A0A7D6W0P1|A0A7D6W0P1_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00240PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	503.75823974609375	2	503.758215	1005.50188	-1.6659	-0.00083919	-2.8847	-0.0014532	-4.5505	-0.0022924	503.7567611496094	52.82	2.3803	50.006	49.591	51.972	-2.8139					140	47	5	0	0	0	0.46377	1	3619	3619		45.952	3.4775	1	2439100	+		58132	31861	47958	48003	63728	63728					-0.000653584048563971
TTIIIAHRL	9	Unmodified	_TTIIIAHRL_					0	0	0		tr|A0A7D6ZFE3|A0A7D6ZFE3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17595PE=4SV=1	tr|A0A7D6ZFE3|A0A7D6ZFE3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17595PE=4SV=1	tr|A0A7D6ZFE3|A0A7D6ZFE3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17595PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.3259887695312	2	519.326934	1036.63931	0.30532	0.00015856	0.68552	0.00035601	0.99084	0.00051457	519.3267299350402	114.41	1.7356	113.01	112.73	114.46	-1.3977					69	33	3	0	0	0	0.21395	1	10646	10646		73.975	2.0973	1	315520			58133	35507	47959	48004	63729	63729					0.12246014985225884
TTIIILLR	8	Unmodified	_TTIIILLR_					0	0	0			REV__tr|A0A553SS68|A0A553SS68_NIACIDUF3221domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02520PE=4SV=1	REV__tr|A0A553SS68|A0A553SS68_NIACIDUF3221domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02520PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.7576599121094	2	471.820953	941.627353	-0.66442	-0.00031349	1.3926	0.00065708	0.72822	0.00034359	471.82116475038066	66.115	0.42712	66.115	65.945	66.372	0					19	10	2	0	0	0	0.028476	1	6114	6114		19.36	0	1	469690	+		58134	30808	47960	48005	63730	63730					0.15420398242042666
TTIIKCIIN	9	Unmodified	_TTIIKCIIN_					0	0	0		tr|A0A7D6VNL7|A0A7D6VNL7_9CLOTATP-dependentRecD2DNAhelicaseOS=ClostridiumintestinaleOX=36845GN=recD2PE=3SV=1	tr|A0A7D6VNL7|A0A7D6VNL7_9CLOTATP-dependentRecD2DNAhelicaseOS=ClostridiumintestinaleOX=36845GN=recD2PE=3SV=1	tr|A0A7D6VNL7|A0A7D6VNL7_9CLOTATP-dependentRecD2DNAhelicaseOS=ClostridiumintestinaleOX=36845GN=recD2PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8028869628906	2	509.801903	1017.58925	-0.41042	-0.00020923	4.0745	0.0020772	3.6641	0.001868	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.63422	1	13493	13493		27.882	2.4321	1	150140			58135	34715	47961	48006	63731	63731					0.08116144265056846
TTIILEVDN	9	Unmodified	_TTIILEVDN_					0	0	0		ENSG00000197532|ENST00000641622|OR6Y1	ENSG00000197532|ENST00000641622|OR6Y1	ENSG00000197532|ENST00000641622|OR6Y1	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.3020324707031	2	509.276772	1016.53899	1.6052	0.00081748	-0.51143	-0.00026046	1.0937	0.00055702	509.27579819755056	90.291	1.5651	88.989	88.482	90.047	-1.302					80	30	6	0	0	0	0.027447	1	7992	7992		39.253	11.371	1	204170			58136	8719	47962	48007	63732	63732					0.031383131409029374
TTIILEVDN	9	Unmodified	_TTIILEVDN_					0	0	0		ENSG00000197532|ENST00000641622|OR6Y1	ENSG00000197532|ENST00000641622|OR6Y1	ENSG00000197532|ENST00000641622|OR6Y1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.30328369140625	2	509.276772	1016.53899	-0.65498	-0.00033357	1.5384	0.00078346	0.8834	0.0004499	509.276956502081	91.4	1.3199	88.857	88.553	89.873	-2.5425					79	25	6	0	0	0	0.027433	1	7902	7902		54.776	12.38	1	340840			58137	8719	47962	48007	63733	63733					0.031383131409029374
TTIKMLTTLLS	11	Unmodified	_TTIKMLTTLLS_					0	0	0		tr|A0A7D6W2U4|A0A7D6W2U4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07635PE=4SV=1	tr|A0A7D6W2U4|A0A7D6W2U4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07635PE=4SV=1	tr|A0A7D6W2U4|A0A7D6W2U4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07635PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	611.355712890625	2	611.359782	1220.70501	-3.7398	-0.0022864	-2.2793	-0.0013935	-6.0191	-0.0036798	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.71498	2	15274	15236;15274		24.519	3.5723	1	331570			58138	35438	47963	48008	63734;63735	63735					0.10348623325262452
TTIKMLTTLLS	11	Unmodified	_TTIKMLTTLLS_					0	0	0		tr|A0A7D6W2U4|A0A7D6W2U4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07635PE=4SV=1	tr|A0A7D6W2U4|A0A7D6W2U4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07635PE=4SV=1	tr|A0A7D6W2U4|A0A7D6W2U4_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07635PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3540649414062	2	611.359782	1220.70501	-2.725	-0.001666	-3.4964	-0.0021376	-6.2214	-0.0038035	611.3575283211214	150.83	4.6872	149.39	148.02	152.71	-1.4344					404	109	6	0	0	0	0.69808	2	14876	14876;14953		30.318	1.5447	1	435030			58139	35438	47963	48008	63736;63737	63736					0.10348623325262452
TTINNDKYLN	10	Unmodified	_TTINNDKYLN_					0	0	0			REV__ENSG00000047230|ENST00000359276|CTPS2	REV__ENSG00000047230|ENST00000359276|CTPS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.341552734375	2	598.30131	1194.58807	1.035	0.00061925	4.3226	0.0025862	5.3576	0.0032055	598.3040127050762	132.38	0.42325	132.38	132.23	132.65	0					16	8	2	0	0	0	0.026906	1	15412	15412		33.922	0	1	136450	+		58140	16255	47964	48009	63738	63738					-0.0014439857013712754
TTIPQPNIL	9	Unmodified	_TTIPQPNIL_					0	0	0			REV__nc|ENSG00000163576|Q8N7U6-2|EFHB	REV__nc|ENSG00000163576|Q8N7U6-2|EFHB	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.3167419433594	2	498.78985	995.565146	2.0441	0.0010196	1.3916	0.00069411	3.4357	0.0017137	498.79188019419024	110.77	0.2207	110.77	110.58	110.8	0					6	4	2	0	0	0	0.027447	1	12581	12581		39.253	0	1	76895	+		58141	20855	47965	48010	63739	63739					0.06718627103043673
TTITAATATI	10	Unmodified	_TTITAATATI_					0	0	0			REV__nc|ENSG00000126016|Q4VCS5-2|AMOT	REV__nc|ENSG00000126016|Q4VCS5-2|AMOT	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.7670593261719	2	482.27149	962.528426	0.9646	0.0004652	1.8773	0.00090536	2.8419	0.0013706	482.27236008382516	74.46	0.83228	74.46	74.214	75.046	0					28	20	2	0	0	0	0.026849	1	7452	7452		25.574	0	1	463160	+		58142	18768	47966	48011	63740	63740					0.04566330486488823
TTITIFITLFL	11	Unmodified	_TTITIFITLFL_					0	0	0		nc|ENSG00000211896|P01857|IGHG1;nc|ENSG00000211893|P01859|IGHG2;nc|ENSG00000211892|P01861|IGHG4;nc|ENSG00000211897|P01860|IGHG3	nc|ENSG00000211896|P01857|IGHG1	nc|ENSG00000211896|P01857|IGHG1	MULTI-MSMS	OvCa9_classI_Rep3	3	641.881591796875	2	641.88649	1281.75843	-5.3554	-0.0034376	-0.73768	-0.00047351	-6.0931	-0.0039111	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.70865	1	13350	13350		26.693	2.4902	1	804890			58143	15300	47967	48012	63741	63741					0.12881744099422576
TTIVLVNLFTG	11	Unmodified	_TTIVLVNLFTG_					0	0	0			REV__sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1	REV__sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3427124023438	2	589.344989	1176.67542	-3.0463	-0.0017953	-0.38122	-0.00022467	-3.4276	-0.00202	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.70761	1	15040	15040		27.047	3.5246	1	272220	+		58144	29418	47968	48013	63742	63742					0.09415427371436635
TTIVLVNLFTG	11	Unmodified	_TTIVLVNLFTG_					0	0	0			REV__sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1	REV__sp|P09703|US27_HCMVAG-proteincoupledreceptorhomologUS27OS=Humancytomegalovirus(strainAD169)OX=10360GN=US27PE=1SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3421630859375	2	589.344989	1176.67542	-4.3129	-0.0025418	0.73104	0.00043083	-3.5818	-0.0021109	589.3453728975387	144.79	3.9151	143.81	141.71	145.63	-0.97299					242	78	5	0	0	0	0.70142	1	12081	12081		29.17	0.020503	1	192050	+		58145	29418	47968	48013	63743	63743					0.09415427371436635
TTIVWRRKSRR	11	Unmodified	_TTIVWRRKSRR_					0	0	0			REV__ENSG00000124215|ENST00000348616|CDH26	REV__ENSG00000124215|ENST00000348616|CDH26	MULTI-MSMS	OvCa9_classI_Rep3	3	486.95880126953125	3	486.963659	1457.86915	-7.2824	-0.0035463	-2.4216	-0.0011792	-9.704	-0.0047255	486.9623381995862	161.08	3.4384	159.71	158.52	161.96	-1.3692					219	70	4	0	0	0	0.72516	1	14017	14017		13.508	5.1007	1	133400	+		58146	18675	47969	48014	63744	63744					0.15852821650878468
TTKHRLDVI	9	Unmodified	_TTKHRLDVI_					0	0	0			REV__ENSG00000153339|ENST00000283351|TRAPPC8	REV__ENSG00000153339|ENST00000283351|TRAPPC8	MULTI-MSMS	OvCa9_classI_Rep3	3	541.8196411132812	2	541.819473	1081.62439	-0.2025	-0.00010972	-0.86937	-0.00047104	-1.0719	-0.00058076	541.8190481905314	75.406	2.4622	72.995	72.631	75.093	-2.4106					113	47	5	0	0	0	0.38969	1	3816	3816		52.937	1.744	1	2066600	+		58147	20338	47970	48015	63745	63745					0.08684523117221943
TTKKVQDQTD	10	Unmodified	_TTKKVQDQTD_					0	0	0		L1PA6_dup2267|chr6:2299837-2303022:+|1.5111882528479883|0.3006554191737456|2.33|429.0|1|1|sense	L1PA6_dup2267|chr6:2299837-2303022:+|1.5111882528479883|0.3006554191737456|2.33|429.0|1|1|sense	L1PA6_dup2267|chr6:2299837-2303022:+|1.5111882528479883|0.3006554191737456|2.33|429.0|1|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.3016357421875	2	582.298767	1162.58298	0.074312	4.3272E-05	-0.84103	-0.00048973	-0.76671	-0.00044646	582.8005704728147	63.199	0.47466	63.199	62.94	63.414	0					18	11	2	0	0	0	0.027028	1	5674	5674		8.2351	0	1	568430			58148	14716	47971	48016	63746	63746					0.008192975672500324
TTKLEQILL	9	Unmodified	_TTKLEQILL_					0	0	0		ENST00000428453.5_1_15:20588586-20667676:-|nuORF;nc|ENSG00000290376|Q9BVR0|HERC2P3;ENST00000437318.5_1_15:20588586-20648641:-|nuORF	ENST00000428453.5_1_15:20588586-20667676:-|nuORF	ENST00000428453.5_1_15:20588586-20667676:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2619018554688	2	529.826432	1057.63831	2.4989	0.001324	-0.82112	-0.00043505	1.6778	0.00088893	529.8259743766979	86.733	0.49936	86.733	86.431	86.931	0					23	11	3	0	0	0	0.027453	1	9120	9120		54.776	5.3348	1	318240			58149	11773	47972	48017	63747	63747					0.11179755825673965
TTKLEQILL	9	Unmodified	_TTKLEQILL_					0	0	0		ENST00000428453.5_1_15:20588586-20667676:-|nuORF;nc|ENSG00000290376|Q9BVR0|HERC2P3;ENST00000437318.5_1_15:20588586-20648641:-|nuORF	ENST00000428453.5_1_15:20588586-20667676:-|nuORF	ENST00000428453.5_1_15:20588586-20667676:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	529.826432	1057.63831	-0.52075	-0.00027591	-8.0013	-0.0042393	-8.522	-0.0045152	529.8208877153997	89.422	0.93556	86.831	86.397	87.332	-2.5909	0.048825	-0.006609	NaN	79.713	24	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20527			58150	11773	47972	48017							0.11179755825673965
TTKNNVVQP	9	Unmodified	_TTKNNVVQP_					0	0	0		nc|ENSG00000025156|Q03933-2|HSF2;ENSG00000025156|ENST00000368455|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	nc|ENSG00000025156|Q03933-2|HSF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.82525634765625	2	500.774731	999.534909	1.9742	0.00098862	4.4447	0.0022258	6.4189	0.0032144	500.7766407838344	82.189	0.58479	82.189	81.895	82.479	0					29	13	3	0	0	0	0.027462	1	8462	8462		15.642	0	1	699710			58151	1045	47973	48018	63748	63748					0.035122684378507074
TTKQKKKE	8	Unmodified	_TTKQKKKE_					0	0	0			REV__ENST00000602480.1_12:7187736-7187799:-|nuORF	REV__ENST00000602480.1_12:7187736-7187799:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.3040771484375	2	495.800749	989.586944	2.7675	0.0013721	0.81793	0.00040553	3.5854	0.0017776	495.8010455800342	130.6	2.8271	129.13	127.57	130.4	-1.4779					94	57	3	0	0	0	0.75723	1	12416	12416		23.042	0	1	84961	+		58152	28041	47974	48019	63749	63749					0.09173431851615987
TTKRPKLDS	9	Unmodified	_TTKRPKLDS_					0	0	0			REV__ENST00000573823.5_1_17:55055520-55064652:+|nuORF	REV__ENST00000573823.5_1_17:55055520-55064652:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3021850585938	2	523.303655	1044.59276	-0.69596	-0.0003642	0.54848	0.00028702	-0.14748	-7.7179E-05	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.68424	1	13721	13721		21.96	4.4919	1	130240	+		58153	18528	47975	48020	63750	63750					0.07224530363282611
TTKRPKSID	9	Unmodified	_TTKRPKSID_					0	0	0		NFIX-CALR|3|fusion;nc|ENSG00000008441|Q14938-6|NFIX;nc|ENSG00000008441|Q14938-5|NFIX;nc|ENSG00000008441|Q14938-3|NFIX;nc|ENSG00000008441|Q14938-2|NFIX;nc|ENSG00000008441|Q14938-4|NFIX;ENSG00000008441|ENST00000592199|NFIX	NFIX-CALR|3|fusion	NFIX-CALR|3|fusion	MSMS	OvCa9_classI_Rep4_	4	523.3049926757812	2	523.303655	1044.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	138.86	1	137.33	136.83	137.83	-1.5284								0	0	0	0.19941	1	13524	13524		26.693	1.1189	1				58154	15429	47976	48021	63751	63751					0.07224530363282611
TTLAKDTPL	9	Unmodified	_TTLAKDTPL_					0	0	0		nc|ENSG00000186510|P51800-2|CLCNKA;nc|ENSG00000186510|P51800-3|CLCNKA;ENSG00000186510|ENST00000331433|CLCNKA	nc|ENSG00000186510|P51800-2|CLCNKA	nc|ENSG00000186510|P51800-2|CLCNKA	MULTI-MSMS	OvCa9_classI_Rep2	2	480.27264404296875	2	480.274032	958.533512	-0.743	-0.00035684	0.81724	0.0003925	0.074245	3.5658E-05	480.27422408083294	74.673	1.8796	72.702	71.693	73.572	-1.9711					57	35	2	0	0	0	0.11471	1	6121	6121		93.195	2.8256	1	332260			58155	8341	47977	48022	63752	63752					0.05258634349092972
TTLAWHLW	8	Unmodified	_TTLAWHLW_					0	0	0		PPP1CB-PLB1|5|fusion;PPP1CB-PLB1|6|fusion;PPP1CB-PLB1|1|fusion;nc|ENSG00000163803|Q6P1J6-3|PLB1;PPP1CB-PLB1|2|fusion;ENSG00000163803|ENST00000327757|PLB1;nc|ENSG00000163803|Q6P1J6-4|PLB1	PPP1CB-PLB1|5|fusion	PPP1CB-PLB1|5|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.30322265625	2	514.271627	1026.5287	-0.90898	-0.00046746	-2.215	-0.0011391	-3.1239	-0.0016066	514.2703965425837	102.59	0.73992	101.9	101.59	102.33	-0.68459					22	14	2	0	0	0	0.028476	1	9492	9492		35.201	0	1	16482			58156	15516	47978	48023	63753	63753					0.01649794996978926
TTLCGKSNSR	10	Unmodified	_TTLCGKSNSR_					0	0	0			REV__nc|ENSG00000106078|O75128-3|COBL	REV__nc|ENSG00000106078|O75128-3|COBL	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.777587890625	2	533.769123	1065.52369	-0.4989	-0.00026629	1.4292	0.00076284	0.93026	0.00049654	533.7698951900257	38.309	0.2798	38.309	38.114	38.394	0					9	5	2	0	0	0	0.026891	1	2177	2177		31.53	14.165	1	105090	+		58157	28782	47979	48024	63754	63754					-0.006448769279359112
TTLCLRERE	9	Unmodified	_TTLCLRERE_					0	0	0		nc|ENSG00000257520|P0C7M3|SFTA3	nc|ENSG00000257520|P0C7M3|SFTA3	nc|ENSG00000257520|P0C7M3|SFTA3	MULTI-MSMS	OvCa9_classI_Rep2	2	560.789306640625	2	560.792598	1119.57064	0.076238	4.2753E-05	-3.3831	-0.0018972	-3.3069	-0.0018545	560.7906951341574	64.273	2.9179	61.548	60.968	63.886	-2.7245					181	56	6	0	0	0	0.35444	1	4870	4870		56.721	0.28726	1	2758800			58158	15356	47980	48025	63755	63755					0.015639826232018095
TTLCLRERE	9	Unmodified	_TTLCLRERE_					0	0	0		nc|ENSG00000257520|P0C7M3|SFTA3	nc|ENSG00000257520|P0C7M3|SFTA3	nc|ENSG00000257520|P0C7M3|SFTA3	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.7924194335938	2	560.792598	1119.57064	0.99026	0.00055533	-4.2732	-0.0023964	-3.2829	-0.001841	560.7902547795154	65.061	2.6294	61.576	61.114	63.744	-3.4854					165	53	6	0	0	0	0.35444	1	4687	4687		56.721	1.9447	1	6333200			58159	15356	47980	48025	63756	63756					0.015639826232018095
TTLITIILI	9	Unmodified	_TTLITIILI_					0	0	0			REV__tr|A0A7D7A2M8|A0A7D7A2M8_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17790PE=4SV=1	REV__tr|A0A7D7A2M8|A0A7D7A2M8_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17790PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.8962097167969	2	500.836268	999.657984	-0.48615	-0.00024348	1.673	0.00083789	1.1868	0.00059441	500.83721747312836	73.836	0.34914	71.349	71.024	71.373	-2.4873					10	6	2	0	0	0	0.027462	1	3585	3585		18.324	0	1	27052	+		58160	32547	47981	48026	63757	63757					0.15814131836441447
TTLITIILI	9	Unmodified	_TTLITIILI_					0	0	0			REV__tr|A0A7D7A2M8|A0A7D7A2M8_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17790PE=4SV=1	REV__tr|A0A7D7A2M8|A0A7D7A2M8_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17790PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	500.836268	999.657984	-0.67016	-0.00033564	2.017	0.0010102	1.3468	0.00067454	500.83725146684924	73.508	0.41946	71.109	70.844	71.264	-2.3999	-0.12023	0.00015908	NaN	18.324	13	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18201	+		58161	32547	47981	48026							0.15814131836441447
TTLLLSKLSN	10	Unmodified	_TTLLLSKLSN_					0	0	0		tr|A0A553SQG4|A0A553SQG4_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_07570PE=4SV=1;tr|A0A553SQX2|A0A553SQX2_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_07470PE=4SV=1	tr|A0A553SQG4|A0A553SQG4_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_07570PE=4SV=1	tr|A0A553SQG4|A0A553SQG4_NIACIMarRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_07570PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	544.8106689453125	2	545.329339	1088.64412	-0.056205	-3.065E-05	1.4507	0.0007911	1.3945	0.00076045	545.328926472275	78.751	0.96284	77.012	76.759	77.722	-1.7398					34	18	3	0	0	0	0.026519	1	6565	6565		59.931	1.1488	1	24235			58162	34157	47982	48027	63758	63758					0.10334854337361321
TTLPPHEQV	9	Unmodified	_TTLPPHEQV_					0	0	0		ENSG00000269113|ENST00000606738|TRABD2B	ENSG00000269113|ENST00000606738|TRABD2B	ENSG00000269113|ENST00000606738|TRABD2B	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.3053283691406	2	511.269281	1020.52401	1.6105	0.00082341	-1.6466	-0.00084186	-0.036072	-1.8443E-05	511.26829902783913	87.883	1.4246	86.452	85.891	87.315	-1.4311					65	28	3	0	0	0	0.027462	1	7673	7673		34.173	13.226	1	241400			58163	9540	47983	48028	63759	63759					0.0145686606357458
TTLPRIYK	8	Unmodified	_TTLPRIYK_					0	0	0			REV__nc|ENSG00000154760|Q68D06-2|SLFN13	REV__nc|ENSG00000154760|Q68D06-2|SLFN13	MULTI-MSMS	OvCa9_classI_Rep3	3	496.2991638183594	2	496.300384	990.586216	1.2461	0.00061845	-1.3256	-0.00065787	-0.079436	-3.9424E-05	496.29955522437075	123.03	1.3483	121.99	121.68	123.03	-1.0377					64	25	3	0	0	0	0.74229	1	9491	9491		30.504	0	1	228980	+		58164	20396	47984	48029	63760	63760					0.0905463720255284
TTLQTFLK	8	Unmodified	_TTLQTFLK_					0	0	0			REV__tr|A0A553SRR0|A0A553SRR0_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_01580PE=3SV=1	REV__tr|A0A553SRR0|A0A553SRR0_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_01580PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	476.2759094238281	2	476.279118	950.543683	-0.37815	-0.00018011	-2.5795	-0.0012286	-2.9576	-0.0014087	476.2777484604189	24.65	0.4024	24.65	24.486	24.888	0					13	7	3	0	0	0	0.66704	1	468	468		50.025	7.5501	1	149670	+		58165	30756	47985	48030	63761	63761					0.06643242074324007
TTLQVRIL	8	Unmodified	_TTLQVRIL_					0	0	0			REV__ENSG00000205339|ENST00000379719|IPO7	REV__ENSG00000205339|ENST00000379719|IPO7	MULTI-MSMS	OvCa99_classI_Rep5	1	472.3013916015625	2	472.300384	942.586216	2.3823	0.0011251	0.033006	1.5589E-05	2.4153	0.0011407	472.30030076026816	98.755	0.64805	98.755	98.506	99.154	0					36	15	3	0	0	0	0.42208	1	10882	10882		85.359	8.5128	1	4611100	+		58166	23212	47986	48031	63762	63762					0.11262637202582937
TTLQVRIL	8	Unmodified	_TTLQVRIL_					0	0	0			REV__ENSG00000205339|ENST00000379719|IPO7	REV__ENSG00000205339|ENST00000379719|IPO7	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	472.300384	942.586216	2.3823	0.0011251	0.033006	1.5589E-05	2.4153	0.0011407	472.30030076026816	98.755	0.64805	98.755	98.506	99.154	0	0	0	NaN	85.359	36	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4611100	+		58167	23212	47986	48031							0.11262637202582937
TTLRFTTSI	9	Unmodified	_TTLRFTTSI_					0	0	0			REV__ENSG00000145632|ENST00000274289|PLK2	REV__ENSG00000145632|ENST00000274289|PLK2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.30908203125	2	520.292756	1038.57096	-0.31117	-0.0001619	-0.44288	-0.00023043	-0.75405	-0.00039232	520.2922518947973	61.879	0.80946	58.422	58.103	58.913	-3.4577					30	16	2	0	0	0	0.027462	1	4287	4287		51.335	12.083	1	269050	+		58168	19972	47987	48032	63763	63763					0.053217256147036096
TTLRFTTSI	9	Unmodified	_TTLRFTTSI_					0	0	0			REV__ENSG00000145632|ENST00000274289|PLK2	REV__ENSG00000145632|ENST00000274289|PLK2	MULTI-MATCH	OvCa99_classI_Rep5	1		2	520.292756	1038.57096	-0.52831	-0.00027487	-7.6167	-0.0039629	-8.145	-0.0042378	520.2888375763334	58.547	0.41536	58.547	58.28	58.696	0	0.062803	-0.0067795	NaN	47.657	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	250240	+		58169	19972	47987	48032							0.053217256147036096
TTLVFLPPL	9	Unmodified	_TTLVFLPPL_					0	0	0		L1M5_dup19360|chr6:26173337-26173691:-|1.1585645943326544|0.3378610768711136|1.78|429.0|24|2|anti-sense	L1M5_dup19360|chr6:26173337-26173691:-|1.1585645943326544|0.3378610768711136|1.78|429.0|24|2|anti-sense	L1M5_dup19360|chr6:26173337-26173691:-|1.1585645943326544|0.3378610768711136|1.78|429.0|24|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.2935485839844	2	500.807511	999.600469	-1.9518	-0.0009775	-2.0605	-0.0010319	-4.0124	-0.0020094	500.8060440696449	107.28	1.1462	105.4	104.59	105.74	-1.8785					36	21	3	0	0	0	0.027462	1	9714	9714		18.324	0	1	47417			58170	14555	47988	48033	63764	63764					0.10065289630870211
TTNGWHII	8	Unmodified	_TTNGWHII_					0	0	0		tr|A0A553SGY6|A0A553SGY6_NIACIFoldaseproteinPrsAOS=NialliacirculansOX=1397GN=prsAPE=3SV=1	tr|A0A553SGY6|A0A553SGY6_NIACIFoldaseproteinPrsAOS=NialliacirculansOX=1397GN=prsAPE=3SV=1	tr|A0A553SGY6|A0A553SGY6_NIACIFoldaseproteinPrsAOS=NialliacirculansOX=1397GN=prsAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.8014831542969	2	471.245609	940.476666	0.097162	4.5787E-05	3.6434	0.0017169	3.7406	0.0017627	471.24738416281485	52.807	2.0213	49.599	48.792	50.813	-3.208					77	39	4	0	0	0	0.028476	1	3196	3196		30.504	7.4612	1	207210			58171	33208	47989	48034	63765	63765					0.00404631583239734
TTNLRHLW	8	Unmodified	_TTNLRHLW_					0	0	0			REV__ENST00000558780.5_2_14:24651254-24657791:-|nuORF	REV__ENST00000558780.5_2_14:24651254-24657791:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3297729492188	2	520.785433	1039.55631	-1.2075	-0.00062883	-0.86288	-0.00044937	-2.0703	-0.0010782	521.2860129726723	124.26	0.77021	122.87	122.67	123.44	-1.3908					22	14	2	0	0	0	0.028476	1	11817	11817		37.028	7.8789	1	18077	+		58172	27589	47990	48035	63766	63766					0.0381169825723191
TTPAKRRLS	9	Unmodified	_TTPAKRRLS_					0	0	0			REV__chr3:195729739-195735191|163|11.25|0.0|20.1|+|1|TE_info:L2a,L2a_dup40553,L2,LINE,acceptor,+,195735191,195735890|MUC20-OT1,None|3	REV__chr3:195729739-195735191|163|11.25|0.0|20.1|+|1|TE_info:L2a,L2a_dup40553,L2,LINE,acceptor,+,195735191,195735890|MUC20-OT1,None|3	MULTI-MSMS	OvCa9_classI_Rep2	2	515.310791015625	2	515.311815	1028.60908	-2.0827	-0.0010732	1.7149	0.00088368	-0.36786	-0.00018956	515.312623228854	35.485	1.3896	32.775	32.503	33.893	-2.7097					66	27	3	0	0	0	0.55588	1	1463	1463		37.159	0	1	694720	+		58173	16044	47991	48036	63767	63767					0.09591656320048969
TTPLPPPRL	9	Unmodified	_TTPLPPPRL_					0	0	0		ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	ENSG00000272333|ENST00000420124|KMT2B	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.2998352050781	2	496.300384	990.586216	-0.20996	-0.0001042	-0.013117	-6.5099E-06	-0.22308	-0.00011071	496.30023015612176	123.47	1.2954	122.1	121.8	123.1	-1.3666					64	25	3	0	0	0	0.55588	1	11706	11706		37.159	0	1	220800			58174	9552	47992	48037	63768	63768					0.0905463720255284
TTPPHFRP	8	Unmodified	_TTPPHFRP_					0	0	0			REV__ENST00000532354.1_1_11:6341130-6341277:-|nuORF	REV__ENST00000532354.1_1_11:6341130-6341277:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	476.81182861328125	2	476.753601	951.49265	-0.061304	-2.9227E-05	-0.11316	-5.3951E-05	-0.17447	-8.3178E-05	476.7532734676999	35.672	0.23281	35.672	35.52	35.753	0					8	4	2	0	0	0	0.028476	1	1829	1829		24.203	7.4978	1	31709	+		58175	27235	47993	48038	63769	63769					0.014963378201287014
TTPQTKKN	8	Unmodified	_TTPQTKKN_					0	0	0		ENST00000530702.1_2_11:10827460-10828835:-|nuORF;ENST00000525995.1_1_11:10827460-10829842:-|nuORF;ENST00000526148.5_2_11:10827460-10828835:-|nuORF	ENST00000530702.1_2_11:10827460-10828835:-|nuORF	ENST00000530702.1_2_11:10827460-10828835:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	459.23858642578125	2	459.256174	916.497795	-0.31739	-0.00014577	-1.6473	-0.00075652	-1.9647	-0.00090228	459.25573316479415	58.169	0.90193	54.824	54.495	55.397	-3.3449					31	17	2	0	0	0	0.028476	1	3868	3868		23.042	12.177	1	86105			58176	13205	47994	48039	63770	63770					0.03620596892085359
TTPQTKKN	8	Unmodified	_TTPQTKKN_					0	0	0		ENST00000530702.1_2_11:10827460-10828835:-|nuORF;ENST00000525995.1_1_11:10827460-10829842:-|nuORF;ENST00000526148.5_2_11:10827460-10828835:-|nuORF	ENST00000530702.1_2_11:10827460-10828835:-|nuORF	ENST00000530702.1_2_11:10827460-10828835:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	459.256174	916.497795	-0.16201	-7.4403E-05	-0.14795	-6.7949E-05	-0.30996	-0.00014235	459.2559355336593	57.8	0.59896	55.007	54.724	55.323	-2.792	0.091861	0.00041859	NaN	16.473	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9875.9			58177	13205	47994	48039							0.03620596892085359
TTPSKIPR	8	Unmodified	_TTPSKIPR_					0	0	0		ENSG00000213066|ENST00000366847|CEP43	ENSG00000213066|ENST00000366847|CEP43	ENSG00000213066|ENST00000366847|CEP43	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.2701721191406	2	450.269084	898.523616	0.66588	0.00029983	-1.2562	-0.00056561	-0.59027	-0.00026578	450.2683337986321	61.743	3.9648	58.286	57.567	61.531	-3.4577					187	81	5	0	0	0	0.66057	1	4227	4227		51.335	3.6781	1	30469000			58178	9115	47995	48040	63771	63771					0.07029491134369437
TTPTVRAKLT	10	Unmodified	_TTPTVRAKLT_					0	0	0		ENST00000434116.6_1_15:65916409-65944223:+|nuORF;nc|ENSG00000074621|O60721-3|SLC24A1;nc|ENSG00000074621|O60721-2|SLC24A1;ENSG00000074621|ENST00000261892|SLC24A1	ENST00000434116.6_1_15:65916409-65944223:+|nuORF	ENST00000434116.6_1_15:65916409-65944223:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.274169921875	2	544.327131	1086.63971	2.43	0.0013227	3.818	0.0020783	6.248	0.003401	544.329136828798	121.19	0.37303	121.19	121.06	121.43	0					13	8	2	0	0	0	0.027117	1	13966	13966		16.007	0	1	87976			58179	11836	47996	48041	63772	63772					0.09985389914413645
TTQGLQIFIL	10	Unmodified	_TTQGLQIFIL_					0	0	0		ADGRG7|p.Y720H|1|0.12|ENSG00000144820|chr3:100694765-100694765|T/C|missense_variant;ENSG00000144820|ENST00000273352|ADGRG7	ADGRG7|p.Y720H|1|0.12|ENSG00000144820|chr3:100694765-100694765|T/C|missense_variant	ADGRG7|p.Y720H|1|0.12|ENSG00000144820|chr3:100694765-100694765|T/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3302612304688	2	567.331882	1132.64921	-2.3399	-0.0013275	-1.3687	-0.0007765	-3.7086	-0.002104	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.75313	1	14489	14489		24.519	0.99649	1	241060			58180	41	47997	48042	63773	63773					0.0881915819995811
TTQHQLLGLI	10	Unmodified	_TTQHQLLGLI_					0	0	0			REV__nc|ENSG00000121406|Q6P9A3-2|ZNF549	REV__nc|ENSG00000121406|Q6P9A3-2|ZNF549	MULTI-SECPEP	OvCa9_classI_Rep4_	4	562.3089599609375	2	562.327131	1122.63971	1.572	0.00088398	1.3346	0.00075051	2.9067	0.0016345	562.3285051988752	112.76	0.29567	111.25	111.05	111.34	-1.5111					8	5	2	0	0	0	0.026679	1	10424	10424		82.241	7.1972	1	10918	+		58181	18544	47998	48043	63774	63774					0.08329389914433705
TTQYFRFRRRL	11	Unmodified	_TTQYFRFRRRL_					0	0	0			REV__tr|A0A553SJB3|A0A553SJB3_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_16475PE=4SV=1	REV__tr|A0A553SJB3|A0A553SJB3_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_16475PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.8078002929688	3	515.291664	1542.85316	-0.66798	-0.00034421	0.043235	2.2279E-05	-0.62475	-0.00032193	515.2918105380962	39.31	0.44234	39.31	39.063	39.505	0					19	9	3	0	0	0	0.026534	1	2327	2327		3.2113	0	1	146520	+		58182	29989	47999	48044	63775	63775					0.10345115413952044
TTRILPFSM	9	Unmodified	_TTRILPFSM_					0	0	0			REV__ENST00000473883.5_1_3:121350790-121350962:-|nuORF	REV__ENST00000473883.5_1_3:121350790-121350962:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	532.7623901367188	2	533.291702	1064.56885	-2.2556	-0.0012029	0.17153	9.1477E-05	-2.0841	-0.0011114	533.2911857845717	117.84	0.39776	117.69	117.49	117.89	-0.14755					12	7	2	0	0	0	0.027462	1	11274	11274		20.947	2.6225	1	13134	+		58183	26335	48000	48045	63776	63776					0.03914973605265004
TTRKKKLFWRR	11	Unmodified	_TTRKKKLFWRR_					0	0	0		ENST00000393085.3_1_7:135614431-135614677:-|nuORF	ENST00000393085.3_1_7:135614431-135614677:-|nuORF	ENST00000393085.3_1_7:135614431-135614677:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	507.3106689453125	3	507.315921	1518.92593	-7.2505	-0.0036783	-4.3032	-0.0021831	-11.554	-0.0058614	507.31400483839707	163.92	1.3967	162.53	161.26	162.66	-1.3925					92	31	4	0	0	0	0.72582	1	14304	14304		3.4087	1.8857	1	78750			58184	11238	48001	48046	63777	63777					0.1872286920740862
TTRLPVPRA	9	Unmodified	_TTRLPVPRA_					0	0	0		nc|ENSG00000171681|Q6VMQ6-2|ATF7IP;nc|ENSG00000171681|Q6VMQ6-5|ATF7IP;ENSG00000171681|ENST00000261168|ATF7IP;nc|ENSG00000171681|Q6VMQ6-4|ATF7IP	nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	nc|ENSG00000171681|Q6VMQ6-2|ATF7IP	MULTI-MSMS	OvCa9_classI_Rep3	3	505.8087463378906	2	505.808908	1009.60326	-0.53174	-0.00026896	-0.036462	-1.8443E-05	-0.5682	-0.0002874	505.8088540702735	73.091	1.7346	70.604	70.183	71.917	-2.4873					60	34	2	0	0	0	0.48047	1	3541	3541		44.377	1.981	1	714830			58185	7223	48002	48047	63778	63778					0.09884557808356931
TTRPPIVR	8	Unmodified	_TTRPPIVR_					0	0	0			REV__nc|ENSG00000119414|O00743-2|PPP6C	REV__nc|ENSG00000119414|O00743-2|PPP6C	MULTI-MSMS	OvCa9_classI_Rep2	2	470.2899169921875	2	470.290351	938.566149	-0.39525	-0.00018588	0.15045	7.0753E-05	-0.2448	-0.00011513	470.2902710292615	46.08	1.59	43.371	42.998	44.588	-2.7097					64	31	3	0	0	0	0.71369	1	2743	2743		40.573	1.5511	1	432530	+		58186	18442	48003	48048	63779	63779					0.09440886262598269
TTRRFYDSGA	10	Unmodified	_TTRRFYDSGA_					0	0	0		nc|ENSG00000108309|Q59EK9-4|RUNDC3A;ENST00000590834.5_1_17:42386140-42393891:+|nuORF;nc|ENSG00000108309|Q59EK9-2|RUNDC3A;nc|ENSG00000108309|Q59EK9-3|RUNDC3A;ENSG00000108309|ENST00000426726|RUNDC3A	nc|ENSG00000108309|Q59EK9-4|RUNDC3A	nc|ENSG00000108309|Q59EK9-4|RUNDC3A	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.3255615234375	2	587.285994	1172.55744	-1.6045	-0.00094229	2.0657	0.0012132	0.46126	0.00027089	587.2875963147484	64.054	0.35567	64.054	63.854	64.21	0					13	8	2	0	0	0	0.027028	1	5802	5802		24.519	0	1	411570			58187	2644	48004	48049	63780	63780					-0.021941321645272183
TTRRSILL	8	Unmodified	_TTRRSILL_					0	0	0		tr|A0A553SIQ3|A0A553SIQ3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15280PE=4SV=1	tr|A0A553SIQ3|A0A553SIQ3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15280PE=4SV=1	tr|A0A553SIQ3|A0A553SIQ3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15280PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.7285461425781	2	480.303458	958.592364	0.31874	0.00015309	-1.2622	-0.00060625	-0.94349	-0.00045316	480.3025733112187	58.079	1.0063	58.079	57.566	58.572	0					32	23	2	0	0	0	0.028476	1	4980	4980		40.778	5.5774	1	660570			58188	33410	48005	48050	63781	63781					0.11141155434097527
TTSILDEKP	9	Unmodified	_TTSILDEKP_					0	0	0		ENSG00000154262|ENST00000284425|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	ENSG00000154262|ENST00000284425|ABCA6	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.7589111328125	2	502.268947	1002.52334	0.0060552	3.0414E-06	-3.8728	-0.0019452	-3.8667	-0.0019421	502.26623391051584	66.596	0.92477	66.596	66.288	67.212	0					28	22	2	0	0	0	0.027461	1	6271	6271		40.778	7.9657	1	862080			58189	5724	48006	48051	63782	63782					0.022180266238592594
TTSMCLCI	8	Unmodified	_TTSMCLCI_					0	0	0		ENST00000399640.3_1_8:134470960-134471038:-|nuORF	ENST00000399640.3_1_8:134470960-134471038:-|nuORF	ENST00000399640.3_1_8:134470960-134471038:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.2483215332031	2	436.189742	870.364932	0.46427	0.00020251	-0.041717	-1.8197E-05	0.42255	0.00018431	436.1901076531109	56.456	0.65725	53.162	52.92	53.577	-3.2944					22	12	2	0	0	0	0.028476	1	3593	3593		44.531	0	1	22926			58190	11396	48007	48052	63783	63783					-0.0754363015207673
TTSRVLKV	8	Unmodified	_TTSRVLKV_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1;ENSG00000173801|ENST00000393931|JUP	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OvCa9_classI_Rep2	2	452.2845764160156	2	452.284734	902.554916	1.4891	0.00067351	-2.0239	-0.00091536	-0.53473	-0.00024185	452.2836299597544	47.138	2.5308	44.428	43.993	46.524	-2.7097					129	50	4	0	0	0	0.73494	2	2903	2903;2916		34.173	3.6689	1	825520			58191	6867;7415	48008	48053	63784;63785	63784					0.09974064168477526
TTSRYFDEGGD	11	Unmodified	_TTSRYFDEGGD_					0	0	0			REV__nc|ENSG00000204053|P12525|MYCLP1	REV__nc|ENSG00000204053|P12525|MYCLP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	416.8546447753906	3	416.51068	1246.51021	-0.76022	-0.00031664	-0.4414	-0.00018385	-1.2016	-0.00050049	416.5107398765069	70.045	0.19801	66.564	66.49	66.688	-3.4812					5	3	2	0	0	0	0.025912	1	5277	5277		7.3413	0	1	11592	+		58192	29097	48009	48054	63786	63786					-0.10318456226195849
TTSVARPSL	9	Unmodified	_TTSVARPSL_					0	0	0			REV__ENSG00000066084|ENST00000301180|DIP2B	REV__ENSG00000066084|ENST00000301180|DIP2B	MULTI-MSMS	OvCa9_classI_Rep2	2	466.2638854980469	2	466.263999	930.513445	-0.47853	-0.00022312	-0.28919	-0.00013484	-0.76772	-0.00035796	466.26368053004296	59.63	1.197	56.85	56.294	57.491	-2.7801					45	22	3	0	0	0	0.1944	1	4357	4357		77.318	5.4401	1	501960	+		58193	16808	48010	48055	63787	63787					0.04540883409140406
TTTAKKTT	8	Unmodified	_TTTAKKTT_					0	0	0		sp|Q6SWB9|UL11P_HCMVMProteinUL11OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL11PE=1SV=1	sp|Q6SWB9|UL11P_HCMVMProteinUL11OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL11PE=1SV=1	sp|Q6SWB9|UL11P_HCMVMProteinUL11OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL11PE=1SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	426.24554443359375	2	426.245275	850.475997	-1.1759	-0.00050123	2.8537	0.0012164	1.6778	0.00071517	426.2464135300909	139.12	1.5749	138.06	137.54	139.11	-1.0595					80	31	4	0	0	0	0.7594	1	11389	11389		21.96	0.25755	1	422340			58194	32913	48011	48056	63788	63788					0.044777921435184
TTTGAPPGEF	10	Unmodified	_TTTGAPPGEF_					0	0	0		ENST00000297469.3_1_7:1126798-1131245:+|nuORF	ENST00000297469.3_1_7:1126798-1131245:+|nuORF	ENST00000297469.3_1_7:1126798-1131245:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.2309265136719	2	489.232364	976.450176	-0.45623	-0.0002232	-4.4143	-0.0021596	-4.8705	-0.0023828	489.2299538512938	106.16	1.3968	104.14	103.79	105.19	-2.0161					51	26	3	0	0	0	0.62299	1	9666	9666		39.253	4.0521	1	177670			58195	10151	48012	48057	63789	63789					-0.03899102098750973
TTTGHLIYK	9	Unmodified	_TTTGHLIYK_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2	nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000101210|ENST00000217182|EEF1A2	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.2872924804688	2	517.287474	1032.5604	-1.3923	-0.00072024	0.8189	0.00042361	-0.57344	-0.00029663	517.2876413492701	48.741	0.676	45.633	45.348	46.024	-3.1077					35	12	4	0	0	0	0.46356	1	2711	2711		45.972	13.16	1	273690			58196	5844;2151	48013	48058	63790	63790					0.04541742960304873
TTTGHLIYK	9	Unmodified	_TTTGHLIYK_					0	0	0		nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000156508|ENST00000309268|EEF1A1;ENSG00000101210|ENST00000217182|EEF1A2	nc|ENSG00000196205|Q5VTE0|EEF1A1P5;ENSG00000101210|ENST00000217182|EEF1A2	nc|ENSG00000196205|Q5VTE0|EEF1A1P5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	517.287474	1032.5604	-0.5713	-0.00029553	0.15904	8.2267E-05	-0.41227	-0.00021326	517.2873331918145	48.364	0.94646	45.654	45.331	46.277	-2.7097	0.01025	-0.00033476	NaN	45.972	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92988			58197	5844;2151	48013	48058							0.04541742960304873
TTTIRFVL	8	Unmodified	_TTTIRFVL_					0	0	0			REV__ENST00000371317.9_1_X:119737922-119739264:+|nuORF	REV__ENST00000371317.9_1_X:119737922-119739264:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	475.7862854003906	2	475.78711	949.559667	-1.1284	-0.0005369	1.2052	0.00057342	0.07677	3.6526E-05	475.7874490810867	140.15	0.93607	139.11	138.74	139.68	-1.0339					36	18	3	0	0	0	0.75723	1	11510	11510		23.042	0	1	94016	+		58198	24979	48014	48059	63791	63791					0.08286948311229025
TTTKIVLFI	9	Unmodified	_TTTKIVLFI_					0	0	0		tr|A0A553SRU2|A0A553SRU2_NIACINa(+)/H(+)antiportersubunitBOS=NialliacirculansOX=1397GN=CEQ21_01805PE=3SV=1	tr|A0A553SRU2|A0A553SRU2_NIACINa(+)/H(+)antiportersubunitBOS=NialliacirculansOX=1397GN=CEQ21_01805PE=3SV=1	tr|A0A553SRU2|A0A553SRU2_NIACINa(+)/H(+)antiportersubunitBOS=NialliacirculansOX=1397GN=CEQ21_01805PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.32568359375	2	518.326068	1034.63758	-1.0284	-0.00053303	-1.8848	-0.00097696	-2.9132	-0.00151	518.3250657043614	70.688	2.5247	67.207	66.836	69.361	-3.4812					145	51	4	0	0	0	0.60342	1	5411	5411		31.53	1.0262	1	2922500			58199	34297	48015	48060	63792	63792					0.12164961176608813
TTTLVLSV	8	Unmodified	_TTTLVLSV_					0	0	0		ENSG00000116209|ENST00000234831|TMEM59	ENSG00000116209|ENST00000234831|TMEM59	ENSG00000116209|ENST00000234831|TMEM59	MULTI-SECPEP	OvCa99_classI_Rep5	1	417.2009582519531	2	417.252569	832.490584	0.045956	1.9175E-05	1.9047	0.00079475	1.9507	0.00081392	417.25334532109383	52.177	0.22095	52.177	52.038	52.259	0					7	4	2	0	0	0	0.028476	1	4057	4057		18.324	4.5491	1	143560			58200	3163	48016	48061	63793	63793					0.06763864291667687
TTTVPPRK	8	Unmodified	_TTTVPPRK_					0	0	0			REV__ENST00000373391.6_1_6:37897769-38029476:+|nuORF	REV__ENST00000373391.6_1_6:37897769-38029476:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	450.2680969238281	2	450.269084	898.523616	1.3254	0.0005968	-1.7002	-0.00076554	-0.37475	-0.00016874	450.2680012991639	61.146	3.3168	58.387	57.67	60.987	-2.7593					139	63	5	0	0	0	0.67745	2	4504	4504;4569		47.916	1.9636	1	6706400	+		58201	25040	48017	48062	63794;63795	63794					0.07029491134380805
TTVILVMSML	10	Oxidation (M)	_TTVILVM(Oxidation (M))SML_		TTVILVM(0.5)SM(0.5)L		TTVILVM(0)SM(0)L	0	0	1		CAMKK1|p.K451M|1|0.36|ENSG00000004660|chr17:3866001-3866001|T/A|missense_variant	CAMKK1|p.K451M|1|0.36|ENSG00000004660|chr17:3866001-3866001|T/A|missense_variant	CAMKK1|p.K451M|1|0.36|ENSG00000004660|chr17:3866001-3866001|T/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	562.3079223632812	2	562.308703	1122.60285	1.5394	0.00086559	-1.7739	-0.00099747	-0.23452	-0.00013187	562.3077246081845	112.34	2.7945	111.26	110.13	112.92	-1.0753					115	55	5	0	0	0	0.35465	3	8200	8200;8224;8231		74.255	10.721	2	1502900			58202	179	48018	48063	63796;63797;63798	63796		2;3			0.04645633981999708
TTVILVMSML	10	Oxidation (M)	_TTVILVMSM(Oxidation (M))L_		TTVILVM(0.142)SM(0.858)L		TTVILVM(-7.8)SM(7.8)L	0	0	1		CAMKK1|p.K451M|1|0.36|ENSG00000004660|chr17:3866001-3866001|T/A|missense_variant	CAMKK1|p.K451M|1|0.36|ENSG00000004660|chr17:3866001-3866001|T/A|missense_variant	CAMKK1|p.K451M|1|0.36|ENSG00000004660|chr17:3866001-3866001|T/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.308349609375	2	562.308703	1122.60285	1.6081	0.00090426	-1.9246	-0.0010822	-0.31646	-0.00017795	562.3076275952775	112.77	1.839	111.26	110.53	112.37	-1.5111					103	36	5	0	0	0	0.35465	1	10448	10448		74.255	6.7614	2	1731000			58203	179	48018	48063	63799	63799		2;3			0.04645633981999708
TTVKSSSKP	9	Unmodified	_TTVKSSSKP_					0	0	0		ENSG00000072195|ENST00000312358|SPEG;nc|ENSG00000072195|Q15772-1|SPEG;ENST00000485069.1_1_2:220336878-220337913:+|nuORF	ENSG00000072195|ENST00000312358|SPEG	ENSG00000072195|ENST00000312358|SPEG	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.7995300292969	2	467.763832	933.513111	-0.11488	-5.3735E-05	-2.3271	-0.0010885	-2.442	-0.0011423	467.7627077328652	104.83	0.41714	102.71	102.48	102.9	-2.1192					10	7	2	0	0	0	0.02744	1	9484	9484		52.937	2.9122	1	9672.6			58204	1468	48019	48064	63800	63800					0.043694636892951166
TTVKSSSKP	9	Unmodified	_TTVKSSSKP_					0	0	0		ENSG00000072195|ENST00000312358|SPEG;nc|ENSG00000072195|Q15772-1|SPEG;ENST00000485069.1_1_2:220336878-220337913:+|nuORF	ENSG00000072195|ENST00000312358|SPEG	ENSG00000072195|ENST00000312358|SPEG	MULTI-MATCH	OvCa9_classI_Rep3	3		2	467.763832	933.513111	0.46479	0.00021741	-2.7117	-0.0012684	-2.2469	-0.001051	467.76282564130514	104.08	0.31317	102.65	102.45	102.76	-1.4347	-0.028632	-0.00029415	NaN	52.937	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5778.5			58205	1468	48019	48064							0.043694636892951166
TTVPDTTAPF	10	Unmodified	_TTVPDTTAPF_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.3095092773438	2	525.261122	1048.50769	1.6608	0.00087237	-1.3461	-0.00070703	0.31477	0.00016534	525.2601590158139	122.27	0.41074	122.27	122.13	122.54	0					13	8	2	0	0	0	0.026915	1	14097	14097		14.865	0	1	90576			58206	9475	48020	48065	63801	63801					-0.014622598931964603
TTVPTSTDVPT	11	Unmodified	_TTVPTSTDVPT_					0	0	0			REV__nc|ENSG00000169876|Q685J3-2|MUC17	REV__nc|ENSG00000169876|Q685J3-2|MUC17	MULTI-MSMS	OvCa9_classI_Rep2	2	559.7824096679688	2	559.782418	1117.55028	-0.68858	-0.00038545	1.5404	0.00086229	0.85183	0.00047684	559.783083785333	140.27	1.7727	140.04	139.7	141.47	-0.22696					65	35	3	0	0	0	0.70142	1	14033	14033		29.17	3.596	1	124330	+		58207	21490	48021	48066	63802	63802					-0.0037890955561579176
TTVTVRVK	8	Unmodified	_TTVTVRVK_					0	0	0		nc|ENSG00000143376|Q96L92-2|SNX27;ENST00000368841.6_1_1:151584666-151666074:+|nuORF;nc|ENSG00000143376|Q96L92-3|SNX27;ENSG00000143376|ENST00000458013|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	MULTI-MSMS	OvCa9_classI_Rep2	2	452.2844543457031	2	452.284734	902.554916	1.4891	0.00067351	-2.0239	-0.00091536	-0.53473	-0.00024185	452.2836299597544	47.138	2.5308	44.428	43.993	46.524	-2.7097					129	50	4	0	0	0	0.53252	9	2885	2839;2842;2854;2860;2867;2873;2885;2896;2909		74.255	22.166	1	825520			58208	5045	48022	48067	63803;63804;63805;63806;63807;63808;63809;63810;63811	63809					0.09974064168466157
TTVTVRVK	8	Unmodified	_TTVTVRVK_					0	0	0		nc|ENSG00000143376|Q96L92-2|SNX27;ENST00000368841.6_1_1:151584666-151666074:+|nuORF;nc|ENSG00000143376|Q96L92-3|SNX27;ENSG00000143376|ENST00000458013|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	nc|ENSG00000143376|Q96L92-2|SNX27	MULTI-MSMS	OvCa9_classI_Rep4_	4	452.28515625	2	452.284734	902.554916	0.79908	0.00036141	-2.9996	-0.0013567	-2.2005	-0.00099525	452.2831496497707	47.481	2.9264	44.373	44.082	47.008	-3.1077					143	56	4	0	0	0	0.57734	5	2605	2546;2605;2617;2630;2643		68.787	20.871	1	3311000			58209	5045	48022	48067	63812;63813;63814;63815;63816	63813					0.09974064168466157
TTVVDVKEIF	10	Unmodified	_TTVVDVKEIF_					0	0	0		ENSG00000106483|ENST00000436072|SFRP4	ENSG00000106483|ENST00000436072|SFRP4	ENSG00000106483|ENST00000436072|SFRP4	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.7922973632812	2	575.821347	1149.62814	2.0801	0.0011978	-0.34354	-0.00019782	1.7365	0.00099993	575.8211917160579	106.5	0.44478	106.5	106.27	106.72	0					15	9	2	0	0	0	0.027363	1	11970	11970		56.434	0	1	182540			58210	2557	48023	48068	63817	63817					0.05931148100421524
TTVVSCCPAEL	11	Carbamidomethyl (C)	_TTVVSC(Carbamidomethyl (C))CPAEL_	TTVVSC(0.839)C(0.161)PAEL		TTVVSC(7.2)C(-7.2)PAEL		0	1	0		ENST00000416949.5_1_17:41109156-41116489:-|nuORF;ENST00000441280.7_1_17:41108193-41116457:-|nuORF;ENSG00000266967|ENST00000427569|AARSD1;nc|ENSG00000266967|Q9BTE6-2|AARSD1;nc|ENSG00000266967|Q9BTE6-3|AARSD1	ENST00000416949.5_1_17:41109156-41116489:-|nuORF	ENST00000416949.5_1_17:41109156-41116489:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	590.2679443359375	2	590.272849	1178.53115	-5.3391	-0.0031515	-1.6856	-0.00099498	-7.0247	-0.0041465	590.2717322598501	159.2	1.2398	158.97	158.63	159.87	-0.22697					77	24	4	0	0	0	0.41398	1	16180	16180		60.118	7.1816	2	170140			58211	9530	48024	48069	63818	63818	96				-0.05097905442539741
TTWGPLPSI	9	Unmodified	_TTWGPLPSI_					0	0	0			REV__ENST00000311637.9_2_20:50216404-50216899:-|nuORF	REV__ENST00000311637.9_2_20:50216404-50216899:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	486.26495361328125	2	486.263468	970.512382	1.1545	0.00056141	2.1439	0.0010425	3.2985	0.0016039	486.26439439503525	61.985	2.2064	58.916	57.872	60.078	-3.0685					97	53	2	0	0	0	0.59983	1	2236	2236		31.955	2.8053	1	48498	+		58212	24354	48025	48070	63819	63819					0.025946690402406603
TTWKKWVDI	9	Unmodified	_TTWKKWVDI_					0	0	0			REV__NSUN2|p.K565Gfs*9|1|0.04|ENSG00000037474|chr5:6605316-6605317|TT/-|frameshift_variant	REV__NSUN2|p.K565Gfs*9|1|0.04|ENSG00000037474|chr5:6605316-6605317|TT/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	587.8438110351562	2	588.824224	1175.63389	-0.65697	-0.00038684	-1.4478	-0.00085249	-2.1047	-0.0012393	588.8237143317599	46.572	1.0864	43.499	42.979	44.065	-3.0724					28	20	2	0	0	0	0.027462	1	2507	2507		17.365	0	1	49223	+		58213	16612	48026	48071	63820	63820					0.05310291402770417
TTWLHVQTP	9	Unmodified	_TTWLHVQTP_					0	0	0			REV__nc|ENSG00000108639|O43760-2|SYNGR2	REV__nc|ENSG00000108639|O43760-2|SYNGR2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.6629638671875	2	541.785099	1081.55564	-0.8963	-0.0004856	4.0948	0.0022185	3.1985	0.0017329	542.2894580761297	94.503	0.59822	92.035	91.762	92.36	-2.4685					15	11	2	0	0	0	0.027462	1	8277	8277		39.253	0	1	22061	+		58214	28788	48027	48072	63821	63821					0.01812858817538654
TVAAAARDL	9	Unmodified	_TVAAAARDL_					0	0	0		ENST00000607016.1_1_6:34360304-34360421:-|nuORF	ENST00000607016.1_1_6:34360304-34360421:-|nuORF	ENST00000607016.1_1_6:34360304-34360421:-|nuORF	MSMS	OvCa9_classI_Rep2	2	444.2508850097656	2	444.250892	886.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.872	1	62.147	61.647	62.647	-2.7245								0	0	0	0.094478	1	4963	4963		71.877	0.58177	1				58215	14281	48028	48073	63822	63822					0.03944614237661881
TVAAIKKNDR	10	Unmodified	_TVAAIKKNDR_					0	0	0			REV__tr|A0A553SMG1|A0A553SMG1_NIACIRhamnogalacturonanlyaseOS=NialliacirculansOX=1397GN=CEQ21_22500PE=4SV=1	REV__tr|A0A553SMG1|A0A553SMG1_NIACIRhamnogalacturonanlyaseOS=NialliacirculansOX=1397GN=CEQ21_22500PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.8141479492188	2	558.330205	1114.64586	-0.16099	-8.9888E-05	-0.57027	-0.0003184	-0.73126	-0.00040829	558.329950808029	29.062	0.29859	29.062	28.888	29.186	0					11	5	3	0	0	0	0.02717	1	1015	1015		30.318	2.4355	1	56997	+		58216	30325	48029	48074	63823	63823					0.09311908145923553
TVADHIQKV	9	Unmodified	_TVADHIQKV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MSMS	OvCa99_classI_Rep5	1	505.7845458984375	2	505.785099	1009.55564	0.53814	0.00027219	-0.61609	-0.00031161	-0.077947	-3.9425E-05	505.78457972790216	45.601	0.65091	45.601	45.373	46.024	0					26	14	3	0	0	0	0.1944	1	3167	3167		77.318	16.346	1	1267600			58217	7955	48030	48075	63824	63824					0.051248588175326404
TVADHIQKV	9	Unmodified	_TVADHIQKV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	505.785099	1009.55564	-1.1307	-0.00057188	-0.49389	-0.0002498	-1.6246	-0.00082169	505.7853023539678	48.364	0.59962	45.654	45.43	46.029	-2.7097	0.049776	8.2587E-05	NaN	77.318	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16709			58218	7955	48030	48075							0.051248588175326404
TVADHIQKV	9	Unmodified	_TVADHIQKV_					0	0	0		ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	ENSG00000181789|ENST00000314797|COPG1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	505.785099	1009.55564	-1.4841	-0.00075066	-0.28651	-0.00014491	-1.7707	-0.00089557	505.78451783433405	48.666	1.041	45.558	45.192	46.233	-3.1077	-0.046307	0.00029237	NaN	77.318	26	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50728			58219	7955	48030	48075							0.051248588175326404
TVADKIHSV	9	Unmodified	_TVADKIHSV_					0	0	0		DUSP14|p.R117Pfs*10|1|0.25|ENSG00000276023|chr17:37512622-37512622|G/-|frameshift_variant;DUSP14|p.Y125Vfs*51|1|0.24|ENSG00000276023|chr17:37512630-37512631|-/CGCTGTGTAT|frameshift_variant;ENSG00000276023|ENST00000617516|DUSP14	DUSP14|p.R117Pfs*10|1|0.25|ENSG00000276023|chr17:37512622-37512622|G/-|frameshift_variant	DUSP14|p.R117Pfs*10|1|0.25|ENSG00000276023|chr17:37512622-37512622|G/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	485.2723388671875	2	485.271824	968.529095	-0.47167	-0.00022889	-0.086243	-4.1851E-05	-0.55791	-0.00027074	485.27178494989886	48.436	2.0466	48.436	47.984	50.031	0					110	46	5	0	0	0	0.036986	2	3569	3545;3569		129.42	44.506	1	17138000			58220	765	48031	48076	63825;63826	63826					0.043571699261860886
TVADKIHSV	9	Unmodified	_TVADKIHSV_					0	0	0		DUSP14|p.R117Pfs*10|1|0.25|ENSG00000276023|chr17:37512622-37512622|G/-|frameshift_variant;DUSP14|p.Y125Vfs*51|1|0.24|ENSG00000276023|chr17:37512630-37512631|-/CGCTGTGTAT|frameshift_variant;ENSG00000276023|ENST00000617516|DUSP14	DUSP14|p.R117Pfs*10|1|0.25|ENSG00000276023|chr17:37512622-37512622|G/-|frameshift_variant	DUSP14|p.R117Pfs*10|1|0.25|ENSG00000276023|chr17:37512622-37512622|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	485.2700500488281	2	485.271824	968.529095	-1.1335	-0.00055003	1.9108	0.00092726	0.77736	0.00037723	485.27257043029624	53.07	2.1791	50.256	49.245	51.424	-2.8139					70	43	2	0	0	0	0.1944	1	3568	3568		77.318	20.597	1	257540			58221	765	48031	48076	63827	63827					0.043571699261860886
TVADKIHSV	9	Unmodified	_TVADKIHSV_					0	0	0		DUSP14|p.R117Pfs*10|1|0.25|ENSG00000276023|chr17:37512622-37512622|G/-|frameshift_variant;DUSP14|p.Y125Vfs*51|1|0.24|ENSG00000276023|chr17:37512630-37512631|-/CGCTGTGTAT|frameshift_variant;ENSG00000276023|ENST00000617516|DUSP14	DUSP14|p.R117Pfs*10|1|0.25|ENSG00000276023|chr17:37512622-37512622|G/-|frameshift_variant	DUSP14|p.R117Pfs*10|1|0.25|ENSG00000276023|chr17:37512622-37512622|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.2728271484375	2	485.271824	968.529095	-0.82022	-0.00039803	1.3461	0.00065324	0.52591	0.00025521	485.27237988797685	53.283	2.8385	50.075	48.692	51.53	-3.208					111	55	5	0	0	0	0.033166	3	3241	3231;3241;3253		132.76	45.004	1	1170300			58222	765	48031	48076	63828;63829;63830	63829					0.043571699261860886
TVAFFLFE	8	Unmodified	_TVAFFLFE_					0	0	0		ENSG00000169359|ENST00000643144|SLC33A1	ENSG00000169359|ENST00000643144|SLC33A1	ENSG00000169359|ENST00000643144|SLC33A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.79290771484375	2	487.255111	972.49567	0.25433	0.00012392	-3.9932	-0.0019457	-3.7389	-0.0018218	487.25258036179633	73.975	0.57498	73.975	73.56	74.135	0					19	14	2	0	0	0	0.028476	1	7237	7237		33.516	0	1	367100			58223	7003	48032	48077	63831	63831					0.00832168154295232
TVAFISFLLL	10	Unmodified	_TVAFISFLLL_					0	0	0		TAS2R13|p.K207Rfs*23|1|0.08|ENSG00000212128|chr12:10908639-10908679|TCTGTGTCCTTTGTAATTGAGTTGCATTTTCTGGAGATGTT/-|frameshift_variant;ENSG00000212128|ENST00000390677|TAS2R13	TAS2R13|p.K207Rfs*23|1|0.08|ENSG00000212128|chr12:10908639-10908679|TCTGTGTCCTTTGTAATTGAGTTGCATTTTCTGGAGATGTT/-|frameshift_variant	TAS2R13|p.K207Rfs*23|1|0.08|ENSG00000212128|chr12:10908639-10908679|TCTGTGTCCTTTGTAATTGAGTTGCATTTTCTGGAGATGTT/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.2852172851562	2	562.341718	1122.66888	-0.095591	-5.3755E-05	3.9173	0.0022028	3.8217	0.0021491	562.3439219509709	36.195	0.2768	36.195	36.074	36.351	0					8	5	2	0	0	0	0.027147	1	1874	1874		15.642	0	1	10732			58224	9109	48033	48078	63832	63832					0.11245534210706865
TVAGVILER	9	Unmodified	_TVAGVILER_					0	0	0		ENSG00000140955|ENST00000315906|ADAD2;nc|ENSG00000140955|Q8NCV1-2|ADAD2	ENSG00000140955|ENST00000315906|ADAD2	ENSG00000140955|ENST00000315906|ADAD2	MULTI-MSMS	OvCa9_classI_Rep2	2	479.2901306152344	2	479.290017	956.565481	0.48542	0.00023266	-0.92112	-0.00044148	-0.4357	-0.00020882	479.28944941406894	42.946	1.3362	40.237	39.917	41.253	-2.7097					73	26	4	0	0	0	0.38529	1	2368	2368		53.351	2.016	1	745960			58225	4882	48034	48079	63833	63833					0.0854604682289164
TVAIAIVAET	10	Unmodified	_TVAIAIVAET_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.31805419921875	2	494.289682	986.564812	-0.40913	-0.00020223	-2.4486	-0.0012103	-2.8577	-0.0014125	494.2873618928842	103.79	0.24673	103.22	103.03	103.28	-0.57639					7	4	2	0	0	0	0.026553	1	9573	9573		39.253	0	1	8282.2			58226	3103	48035	48080	63834	63834					0.07099207383191697
TVAKKLVV	8	Unmodified	_TVAKKLVV_					0	0	0		ENST00000550373.2_1_12:53937026-53937696:-|nuORF;nc|ENSG00000170653|P17544-5|ATF7	ENST00000550373.2_1_12:53937026-53937696:-|nuORF	ENST00000550373.2_1_12:53937026-53937696:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	429.29620361328125	2	429.294571	856.574589	-0.091459	-3.9263E-05	1.7204	0.00073854	1.6289	0.00069928	429.29518607441537	60.145	1.11	60.145	59.918	61.028	0					51	26	2	0	0	0	0.72896	1	5233	5233		37.159	6.6555	1	2454000			58227	13586	48036	48081	63835	63835					0.14056440179240326
TVALRCPD	8	Carbamidomethyl (C)	_TVALRC(Carbamidomethyl (C))PD_	TVALRC(1)PD		TVALRC(46)PD		0	1	0		sp|P16837|UL128_HCMVAUncharacterizedproteinUL128OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL128PE=1SV=2	sp|P16837|UL128_HCMVAUncharacterizedproteinUL128OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL128PE=1SV=2	sp|P16837|UL128_HCMVAUncharacterizedproteinUL128OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL128PE=1SV=2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.7538757324219	2	466.236927	930.459301	-0.70509	-0.00032874	0.49494	0.00023076	-0.21015	-9.7979E-05	466.2370150206584	53.041	1.3097	49.833	49.349	50.659	-3.208					39	25	2	0	0	0	0.028476	1	3260	3260		45.952	8.7928	1	56187			58228	32904	48037	48082	63836	63836	377				-0.008710320140835393
TVAPGLVER	9	Unmodified	_TVAPGLVER_					0	0	0			REV__nc|ENSG00000155093|Q92932-2|PTPRN2	REV__nc|ENSG00000155093|Q92932-2|PTPRN2	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.3092041015625	2	471.274367	940.53418	-0.32012	-0.00015086	-1.4315	-0.00067464	-1.7516	-0.0008255	471.2735541909163	24.361	0.24902	24.361	24.287	24.536	0					5	4	2	0	0	0	0.027462	1	454	454		30.504	14.862	1	13612	+		58229	28621	48038	48083	63837	63837					0.0615347378881097
TVAQKIAPI	9	Unmodified	_TVAQKIAPI_					0	0	0			REV__ENST00000472052.1_1_6:160197162-160199858:+|nuORF	REV__ENST00000472052.1_1_6:160197162-160199858:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.75970458984375	2	470.794935	939.575317	2.1071	0.000992	0.18732	8.8191E-05	2.2944	0.0010802	470.79486379315586	85.332	0.53838	85.332	85.046	85.585	0					27	12	3	0	0	0	0.027392	1	8942	8942		53.351	0	1	554560	+		58230	18499	48039	48084	63838	63838					0.10311234828270699
TVAQQDGIPE	10	Unmodified	_TVAQQDGIPE_					0	0	0		nc|ENSG00000185379|O75771-7|RAD51D	nc|ENSG00000185379|O75771-7|RAD51D	nc|ENSG00000185379|O75771-7|RAD51D	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.3215942382812	2	529.261653	1056.50875	-0.014029	-7.4251E-06	-0.16518	-8.7425E-05	-0.17921	-9.4851E-05	529.2614596662899	32.855	0.63437	32.855	32.651	33.285	0					33	12	4	0	0	0	0.026606	1	1486	1486		52.937	0	1	498500			58231	15214	48040	48085	63839	63839					-0.01724045524269968
TVASLLLRI	9	Unmodified	_TVASLLLRI_					0	0	0		TBC1D9B|p.G1112Vfs*34|1|0.27|ENSG00000197226|chr5:179863866-179863867|-/A|frameshift_variant;ENSG00000197226|ENST00000355235|TBC1D9B;nc|ENSG00000197226|Q66K14|TBC1D9B;ENST00000520794.1_1_5:179290450-179293075:-|nuORF	TBC1D9B|p.G1112Vfs*34|1|0.27|ENSG00000197226|chr5:179863866-179863867|-/A|frameshift_variant	TBC1D9B|p.G1112Vfs*34|1|0.27|ENSG00000197226|chr5:179863866-179863867|-/A|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	493.32501220703125	2	493.32386	984.633166	1.6054	0.00079199	0.066771	3.294E-05	1.6722	0.00082493	493.3236924913339	125.82	0.84203	125.82	125.57	126.42	0					40	17	3	0	0	0	0.13504	1	14537	14537		87.696	2.7809	1	246110			58232	8691	48041	48086	63840	63840					0.14023496753691234
TVATGQTRLL	10	Unmodified	_TVATGQTRLL_					0	0	0			REV__CBLC|p.S400Vfs*55|1|0.93|ENSG00000142273|chr19:44793534-44793534|A/-|frameshift_variant	REV__CBLC|p.S400Vfs*55|1|0.93|ENSG00000142273|chr19:44793534-44793534|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.321533203125	2	530.31148	1058.60841	-2.4576	-0.0013033	2.5763	0.0013662	0.11874	6.297E-05	530.3126956908145	38.005	0.79034	35.295	35.075	35.865	-2.7097					20	15	2	0	0	0	0.026653	1	1757	1757		49.536	3.5638	1	18607	+		58233	15745	48042	48087	63841	63841					0.08144816880326289
TVATLPRGR	9	Unmodified	_TVATLPRGR_					0	0	0		ENST00000483929.1_1_2:158291208-158300532:-|nuORF;ENST00000462109.1_1_2:158290860-158300532:-|nuORF;ENSG00000115165|ENST00000264192|CYTIP	ENST00000483929.1_1_2:158291208-158300532:-|nuORF	ENST00000483929.1_1_2:158291208-158300532:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	485.79437255859375	2	485.793258	969.571963	-0.4798	-0.00023309	0.30893	0.00015007	-0.17088	-8.3012E-05	485.7932523252104	49.175	0.91779	49.175	48.895	49.813	0					49	20	4	0	0	0	0.48324	1	3665	3665		44.117	0	1	3112400			58234	3066	48043	48088	63842	63842					0.08595984774285625
TVATQWGQL	9	Unmodified	_TVATQWGQL_					0	0	0			REV__nc|ENSG00000119231|Q96HI0-2|SENP5	REV__nc|ENSG00000119231|Q96HI0-2|SENP5	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.23828125	2	502.263999	1002.51345	-0.49287	-0.00024755	-3.4156	-0.0017155	-3.9085	-0.0019631	502.26250841971506	41.385	0.44579	41.385	41.104	41.55	0					19	9	3	0	0	0	0.027137	1	2560	2560		79.713	0	1	158210	+		58235	18431	48044	48089	63843	63843					0.012288834091350509
TVATTEPE	8	Unmodified	_TVATTEPE_					0	0	0		TG|p.S1619A|1|0.04|ENSG00000042832|chr8:132933599-132933599|T/G|missense_variant	TG|p.S1619A|1|0.04|ENSG00000042832|chr8:132933599-132933599|T/G|missense_variant	TG|p.S1619A|1|0.04|ENSG00000042832|chr8:132933599-132933599|T/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	423.25830078125	2	424.205815	846.397078	-0.48871	-0.00020731	0.45114	0.00019137	-0.037569	-1.5937E-05	424.20583451847546	39.85	0.79341	39.85	39.547	40.34	0					28	17	3	0	0	0	0.028476	1	2351	2351		37.159	0	1	618990			58236	32950	48045	48090	63844	63844					-0.03226479881425348
TVAVPLVGK	9	Unmodified	_TVAVPLVGK_					0	0	0		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-MSMS	OvCa9_classI_Rep2	2	442.2839660644531	2	442.284203	882.553853	1.6583	0.00073342	-1.6177	-0.00071549	0.040553	1.7936E-05	442.28338106061653	82.838	2.7545	81.239	80.593	83.347	-1.5989					140	54	4	0	0	0	0.13482	4	7074	7074;7081;7093;7105		87.754	34.403	1	665470			58237	4546	48046	48091	63845;63846;63847;63848	63845					0.10787849799567084
TVAVPLVGK	9	Unmodified	_TVAVPLVGK_					0	0	0		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-MSMS	OvCa9_classI_Rep3	3	442.28509521484375	2	442.284203	882.553853	-0.70892	-0.00031354	0.50526	0.00022347	-0.20366	-9.0077E-05	442.28433092279454	83.254	2.6802	80.958	80.579	83.259	-2.2963					132	55	4	0	0	0	0.11471	5	4740	4736;4740;4746;4753;4760		93.195	38.124	1	1348800			58238	4546	48046	48091	63849;63850;63851;63852;63853	63850					0.10787849799567084
TVAVPLVGK	9	Unmodified	_TVAVPLVGK_					0	0	0		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	442.2850646972656	2	442.284203	882.553853	0.10729	4.7454E-05	-0.064456	-2.8508E-05	0.042836	1.8946E-05	442.2840700770903	83.732	1.9627	81.069	80.681	82.643	-2.6629					125	40	4	0	0	0	0.28934	2	7004	6979;7004		64.207	8.7031	1	1109000			58239	4546	48046	48091	63854;63855	63855					0.10787849799567084
TVAVPLVGKL	10	Unmodified	_TVAVPLVGKL_					0	0	0		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.8265380859375	2	498.826235	995.637917	-0.042573	-2.1237E-05	0.052776	2.6326E-05	0.010203	5.0894E-06	498.82564557741904	110.77	1.3815	110.63	110.29	111.67	-0.13961					67	27	4	0	0	0	0.50999	1	10429	10429		52.937	20.124	1	219080			58240	4546	48047	48092	63856	63856					0.13992380896468148
TVAVPLVGKL	10	Unmodified	_TVAVPLVGKL_					0	0	0		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.8262023925781	2	498.826235	995.637917	1.2524	0.00062473	-2.0199	-0.0010076	-0.76753	-0.00038286	498.8247347008388	111.49	1.3331	110.39	110.2	111.53	-1.1038					60	26	3	0	0	0	0.39172	2	8108	8108;8114		69.628	20.186	1	216910			58241	4546	48047	48092	63857;63858	63857					0.13992380896468148
TVAVPLVGKL	10	Unmodified	_TVAVPLVGKL_					0	0	0		nc|ENSG00000136986|Q9BUN8-2|DERL1;ENSG00000136986|ENST00000259512|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	nc|ENSG00000136986|Q9BUN8-2|DERL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.82525634765625	2	498.826235	995.637917	0.039183	1.9546E-05	-1.4637	-0.00073015	-1.4245	-0.0007106	498.8250055341251	111.88	1.1819	110.37	110.21	111.39	-1.5111					53	22	4	0	0	0	0.39172	1	10335	10335		69.628	23.655	1	266440			58242	4546	48047	48092	63859	63859					0.13992380896468148
TVAVWVVPAIL	11	Unmodified	_TVAVWVVPAIL_					0	0	0			REV__ENSG00000185933|ENST00000329905|CALHM1	REV__ENSG00000185933|ENST00000329905|CALHM1	MULTI-MSMS	OvCa9_classI_Rep3	3	584.3566284179688	2	584.360442	1166.70633	-4.6254	-0.0027029	-2.3023	-0.0013454	-6.9277	-0.0040483	584.3589865391973	145.25	4.5766	144.28	142.9	147.48	-0.97299					233	91	4	0	0	0	0.72466	1	12188	12188		19.997	0	1	156220	+		58243	22546	48048	48093	63860	63860					0.12964625476342917
TVCKFCNV	8	Unmodified	_TVCKFCNV_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.7355651855469	2	457.217149	912.419744	0.5451	0.00024923	-0.25207	-0.00011525	0.29303	0.00013398	457.21697368669055	63.404	0.51076	63.404	63.179	63.69	0					19	12	2	0	0	0	0.028476	1	5695	5695		18.324	0.95945	1	188190	+		58244	18516	48049	48094	63861	63861					-0.03996875289158197
TVCSISKIN	9	Unmodified	_TVCSISKIN_					0	0	0		nc|ENSG00000152229|Q9H939-2|PSTPIP2	nc|ENSG00000152229|Q9H939-2|PSTPIP2	nc|ENSG00000152229|Q9H939-2|PSTPIP2	MULTI-MSMS	OvCa99_classI_Rep5	1	482.75958251953125	2	482.760235	963.505917	1.5197	0.00073363	-3.0462	-0.0014706	-1.5266	-0.00073697	482.75863369433216	93.313	0.9147	93.313	92.926	93.841	0					46	21	3	0	0	0	0.33652	1	10148	10148		58.782	0	1	3011600			58245	15098	48050	48095	63862	63862					0.02270407817195519
TVDAGGITSKE	11	Unmodified	_TVDAGGITSKE_					0	0	0		tr|A0A553SI50|A0A553SI50_NIACIAgmatinaseOS=NialliacirculansOX=1397GN=speBPE=3SV=1	tr|A0A553SI50|A0A553SI50_NIACIAgmatinaseOS=NialliacirculansOX=1397GN=speBPE=3SV=1	tr|A0A553SI50|A0A553SI50_NIACIAgmatinaseOS=NialliacirculansOX=1397GN=speBPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	539.2727661132812	2	539.274761	1076.53497	-0.3913	-0.00021102	0.54503	0.00029392	0.15374	8.2907E-05	539.2748603915094	24.163	0.2998	24.163	23.987	24.287	0					11	5	3	0	0	0	0.58572	1	419	419		45.972	1.8554	1	56992			58246	33343	48051	48096	63863	63863					-0.0002377635280481627
TVDDRVGLMP	10	Unmodified	_TVDDRVGLMP_					0	0	0			REV__nc|ENSG00000165699|Q92574-2|TSC1	REV__nc|ENSG00000165699|Q92574-2|TSC1	MULTI-MSMS	OvCa99_classI_Rep5	1	551.7838745117188	2	551.781699	1101.54884	-0.4863	-0.00026833	0.3485	0.0001923	-0.1378	-7.6033E-05	551.7819029267409	23.707	1.1388	23.707	23.297	24.436	0					34	22	2	0	0	0	0.79213	1	357	357		19.997	2.5288	1	32993	+		58247	21110	48052	48097	63864	63864					0.0021317787463885907
TVDGHVVKL	9	Unmodified	_TVDGHVVKL_					0	0	0			REV__nc|ENSG00000134668|Q6ZMY3-4|SPOCD1	REV__nc|ENSG00000134668|Q6ZMY3-4|SPOCD1	MULTI-SECPEP	OvCa9_classI_Rep2	2	484.23907470703125	2	484.282192	966.549831	-0.013899	-6.7308E-06	-0.87027	-0.00042146	-0.88417	-0.00042819	484.2815715729529	44.888	1.5965	42.178	41.851	43.448	-2.7097					59	31	3	0	0	0	0.027462	1	2616	2616		39.253	5.0803	1	114020	+		58248	19218	48053	48098	63865	63865					0.06521760305861335
TVDGVLLI	8	Unmodified	_TVDGVLLI_					0	0	0			REV__nc|ENSG00000120669|Q9NX45-2|SOHLH2	REV__nc|ENSG00000120669|Q9NX45-2|SOHLH2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	416.2512512207031	2	415.255111	828.49567	0.12022	4.992E-05	-4.4375	-0.0018427	-4.3173	-0.0017928	415.25514800787926	63.967	0.63339	60.492	60.298	60.931	-3.475					19	12	2	0	0	0	0.028476	1	4575	4575		8.8223	0	1	19884	+		58249	18507	48054	48099	63866	63866					0.07456168154294573
TVDHMEVVD	9	Unmodified	_TVDHMEVVD_					0	0	0			REV__ENSG00000087365|ENST00000322535|SF3B2	REV__ENSG00000087365|ENST00000322535|SF3B2	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.8328247070312	2	522.736957	1043.45936	-0.51632	-0.0002699	1.2779	0.00066798	0.76154	0.00039808	522.7376046222026	71.125	0.98016	71.125	70.447	71.427	0					28	24	2	0	0	0	0.027433	1	6854	6854		60.972	0	1	171500	+		58250	17166	48055	48100	63867	63867					-0.060630768047076344
TVDLFCCPECD	11	Unmodified	_TVDLFCCPECD_					0	0	0		ENSG00000184613|ENST00000429094|NELL2;nc|ENSG00000184613|Q99435-2|NELL2;nc|ENSG00000184613|Q99435-3|NELL2;ENST00000547636.1_1_12:44915767-44917277:-|nuORF;nc|ENSG00000184613|Q99435-4|NELL2	ENSG00000184613|ENST00000429094|NELL2	ENSG00000184613|ENST00000429094|NELL2	MULTI-SECPEP	OvCa9_classI_Rep2	2	622.3478393554688	2	622.735242	1243.45593	-2.1096	-0.0013137	4.2603	0.002653	2.1507	0.0013393	623.2392118894769	118.51	0.64726	118.36	118.08	118.73	-0.14755					14	12	2	0	0	0	0.026099	1	11393	11393		19.997	0	1	17248			58251	8176	48056	48101	63868	63868					-0.15605830965273526
TVDSAHIVL	9	Unmodified	_TVDSAHIVL_					0	0	0		ENST00000577198.5_1_17:26603697-26633156:-|nuORF	ENST00000577198.5_1_17:26603697-26633156:-|nuORF	ENST00000577198.5_1_17:26603697-26633156:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	477.76708984375	2	477.766374	953.518196	0.045401	2.1691E-05	-0.061548	-2.9406E-05	-0.016147	-7.7146E-06	477.7661495550662	88.014	1.3475	85.883	85.597	86.944	-2.1309					74	26	4	0	0	0	0.19716	2	5321	5321;5334		76.847	11.043	1	814090			58252	13956	48057	48102	63869;63870	63869					0.0395776755190127
TVDYLRPIL	9	Unmodified	_TVDYLRPIL_					0	0	0			REV__tr|A0A553SUD0|A0A553SUD0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06780PE=4SV=1;REV__tr|A0A7D6VTT5|A0A7D6VTT5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03870PE=4SV=1	REV__tr|A0A7D6VTT5|A0A7D6VTT5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03870PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	545.316650390625	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.61208	1	14151	14151		30.504	1.3541	1	202430	+		58253	31628;31062	48058	48103	63871	63871					0.08222889028479585
TVDYTCDPGYL	11	Unmodified	_TVDYTCDPGYL_					0	0	0		nc|ENSG00000117322|P20023-4|CR2;ENSG00000117322|ENST00000367057|CR2	nc|ENSG00000117322|P20023-4|CR2	nc|ENSG00000117322|P20023-4|CR2	MSMS	OvCa99_classI_Rep5	1	623.7667846679688	2	623.768454	1245.52235	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.25	1	132.25	131.75	132.75	0								0	0	0	0.19402	1	15367	15367		34.173	2.6427	1				58254	3248	48059	48104	63872	63872					-0.09058555807337143
TVEDFALVL	9	Unmodified	_TVEDFALVL_					0	0	0		SACS|p.V3288Tfs*46|1|0.07|ENSG00000151835|chr13:23334014-23334015|-/TGAAGGGATACTTTTTGTAAGTACGT|frameshift_variant;ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	SACS|p.V3288Tfs*46|1|0.07|ENSG00000151835|chr13:23334014-23334015|-/TGAAGGGATACTTTTTGTAAGTACGT|frameshift_variant	SACS|p.V3288Tfs*46|1|0.07|ENSG00000151835|chr13:23334014-23334015|-/TGAAGGGATACTTTTTGTAAGTACGT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	503.7781066894531	2	503.776408	1005.53826	1.1812	0.00059508	0.070188	3.5359E-05	1.2514	0.00063044	503.7761997090942	145.11	0.55032	145.11	144.84	145.39	0					25	11	4	0	0	0	0.31747	1	16954	16954		60.972	13.056	1	136800			58255	5587	48060	48105	63873	63873					0.03571518491855841
TVEELELLL	9	Unmodified	_TVEELELLL_					0	0	0			REV__nc|ENSG00000105695|P20916-2|MAG	REV__nc|ENSG00000105695|P20916-2|MAG	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.7861938476562	2	529.802623	1057.59069	-0.57298	-0.00030357	-1.9532	-0.0010348	-2.5262	-0.0013384	529.8013347082962	60.756	1.2363	57.326	56.848	58.084	-3.43					50	20	3	0	0	0	0.027462	1	4144	4144		25.45	7.1258	1	462830	+		58256	17748	48061	48106	63874	63874					0.064200568348042
TVEELELLL	9	Unmodified	_TVEELELLL_					0	0	0			REV__nc|ENSG00000105695|P20916-2|MAG	REV__nc|ENSG00000105695|P20916-2|MAG	MULTI-MATCH	OvCa9_classI_Rep2	2		2	529.802623	1057.59069	-1.2644	-0.00066989	-1.2474	-0.00066088	-2.5118	-0.0013308	529.8017364237078	60.028	1.4651	57.258	56.725	58.19	-2.7702	-0.034231	0.0003234	NaN	17.365	60	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	168580	+		58257	17748	48061	48106							0.064200568348042
TVEGIARDGL	10	Unmodified	_TVEGIARDGL_					0	0	0		ENSG00000155530|ENST00000285928|LRGUK	ENSG00000155530|ENST00000285928|LRGUK	ENSG00000155530|ENST00000285928|LRGUK	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.277099609375	2	515.780013	1029.54547	1.639	0.00084536	1.2802	0.00066031	2.9192	0.0015057	515.7807882561013	93.118	0.79229	93.118	92.594	93.386	0					26	18	2	0	0	0	0.026679	1	10062	10062		71.877	11.474	1	1885300			58258	5788	48062	48107	63875	63875					0.03188251092274186
TVEIPLEKL	9	Unmodified	_TVEIPLEKL_					0	0	0			REV__nc|ENSG00000107186|O75970-5|MPDZ	REV__nc|ENSG00000107186|O75970-5|MPDZ	MULTI-MSMS	OvCa99_classI_Rep5	1	521.3131103515625	2	521.313158	1040.61176	0.35733	0.00018628	0.76082	0.00039663	1.1182	0.00058291	521.3134639198273	151.32	0.90129	151.32	150.79	151.7	0					37	17	3	0	0	0	0.22621	1	17705	17705		71.877	0	1	113400	+		58259	17836	48063	48108	63876	63876					0.09308066934318049
TVELAASPKK	10	Unmodified	_TVELAASPKK_					0	0	0			REV__ENST00000515038.1_1_5:139060567-139061044:+|nuORF	REV__ENST00000515038.1_1_5:139060567-139061044:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	522.3087158203125	2	522.308406	1042.60226	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.91	1	127.46	126.96	127.96	-1.4565								0	0	0	0.13679	1	12331	12331		30.318	4.7437	1		+		58260	26994	48064	48109	63877	63877					0.0826629864880033
TVELLAEIL	9	Unmodified	_TVELLAEIL_					0	0	0		ENST00000461386.5_1_20:34043524-34047829:+|nuORF	ENST00000461386.5_1_20:34043524-34047829:+|nuORF	ENST00000461386.5_1_20:34043524-34047829:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.2901611328125	2	500.799883	999.585213	-0.51298	-0.0002569	1.3832	0.00069272	0.87025	0.00043582	500.8004449406205	36.003	0.27514	36.003	35.799	36.074	0					16	5	4	0	0	0	0.027433	1	1836	1836		34.173	0	1	375240			58261	12177	48065	48110	63878	63878					0.08540378042994234
TVENKQWL	8	Unmodified	_TVENKQWL_					0	0	0			REV__KCNH5|p.R691W|1|0.18|ENSG00000140015|chr14:62708404-62708404|G/A|missense_variant	REV__KCNH5|p.R691W|1|0.18|ENSG00000140015|chr14:62708404-62708404|G/A|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	509.271484375	2	509.271824	1016.5291	1.7019	0.00086673	0.22302	0.00011358	1.9249	0.00098031	509.27186324584557	92.195	1.2569	92.195	91.711	92.968	0					74	29	5	0	0	0	0.38598	1	10009	10009		90.777	0	1	17636000	+		58262	28325	48066	48111	63879	63879					0.02149169926178729
TVENQNMKL	9	Unmodified	_TVENQNMKL_					0	0	0		tr|A0A553SQZ9|A0A553SQZ9_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00055PE=4SV=1	tr|A0A553SQZ9|A0A553SQZ9_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00055PE=4SV=1	tr|A0A553SQZ9|A0A553SQZ9_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00055PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.2915649414062	2	538.773874	1075.53319	1.2067	0.00065016	3.9033	0.002103	5.1101	0.0027532	538.7760951198034	109.49	0.57639	109.49	109.19	109.77	0					18	12	2	0	0	0	0.02741	1	12391	12391		51.335	1.8939	1	185080			58263	34212	48067	48112	63880	63880					-0.0015510864241150557
TVEPLKRKLE	10	Unmodified	_TVEPLKRKLE_					0	0	0			REV__tr|A0A7D6W1K9|A0A7D6W1K9_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03085PE=4SV=1	REV__tr|A0A7D6W1K9|A0A7D6W1K9_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03085PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	606.8685913085938	2	606.869163	1211.72377	-0.36298	-0.00022028	-2.1149	-0.0012835	-2.4779	-0.0015037	606.8678197552722	29.012	0.64744	29.012	28.838	29.486	0					24	12	3	0	0	0	0.53396	1	996	996		37.812	0.65241	1	557030	+		58264	31884	48068	48113	63881	63881					0.12637921011332764
TVETLEPLGV	10	Unmodified	_TVETLEPLGV_					0	0	0		ENSG00000117877|ENST00000309424|POLR1G;nc|ENSG00000117877|O15446-2|POLR1G	ENSG00000117877|ENST00000309424|POLR1G	ENSG00000117877|ENST00000309424|POLR1G	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.3211059570312	2	529.292422	1056.57029	-0.47222	-0.00024994	-3.2462	-0.0017182	-3.7184	-0.0019681	529.2914070446631	38.427	1.1892	35.5	34.957	36.146	-2.9264					75	23	5	0	0	0	0.026639	1	1479	1479		63.306	1.1989	1	77725			58265	3282	48069	48114	63882	63882					0.0442688617499698
TVFDGVENQL	10	Unmodified	_TVFDGVENQL_					0	0	0			REV__nc|ENSG00000244754|Q92802-3|N4BP2L2	REV__nc|ENSG00000244754|Q92802-3|N4BP2L2	MULTI-MSMS	OvCa99_classI_Rep5	1	561.2804565429688	2	561.277303	1120.54005	1.6172	0.00090771	4.3421	0.0024371	5.9593	0.0033448	561.2796226679186	139.17	2.2469	139.17	138.78	141.03	0					119	46	4	0	0	0	0.30325	1	16228	16228		80.455	3.6805	1	1338400	+		58266	29166	48070	48115	63883	63883					-0.015394724901852896
TVFENGVK	8	Unmodified	_TVFENGVK_					0	0	0			REV__ENSG00000264424|ENST00000255381|MYH4	REV__ENSG00000264424|ENST00000255381|MYH4	MULTI-MSMS	OvCa9_classI_Rep4_	4	447.2406311035156	2	447.239993	892.465432	0.64054	0.00028647	-0.86552	-0.0003871	-0.22498	-0.00010062	447.2394937791373	59.958	1.2345	56.528	56.21	57.444	-3.43					61	24	4	0	0	0	0.62474	1	4055	4055		58.782	2.0609	1	966640	+		58267	23581	48071	48116	63884	63884					0.01489809489100935
TVFFHPLLI	9	Unmodified	_TVFFHPLLI_					0	0	0		nc|ENSG00000107537|O14832-2|PHYH;ENSG00000107537|ENST00000263038|PHYH	nc|ENSG00000107537|O14832-2|PHYH	nc|ENSG00000107537|O14832-2|PHYH	MULTI-MSMS	OvCa99_classI_Rep5	1	543.8253784179688	2	543.820953	1085.62735	2.0391	0.0011089	-1.4031	-0.00076306	0.636	0.00034587	543.8199115646423	136.82	1.2454	136.82	136.54	137.78	0					37	25	2	0	0	0	0.42057	1	15950	15950		50.025	2.3672	1	129360			58268	2602	48072	48117	63885	63885					0.08796398242043324
TVFFVPAPAR	10	Unmodified	_TVFFVPAPAR_					0	0	0			REV__ENSG00000108846|ENST00000285238|ABCC3	REV__ENSG00000108846|ENST00000285238|ABCC3	MULTI-MSMS	OvCa99_classI_Rep5	1	552.8139038085938	2	552.813659	1103.61277	-0.29401	-0.00016253	0.090121	4.982E-05	-0.20389	-0.00011271	552.8135393260636	71.397	0.72727	71.397	71.15	71.877	0					37	17	3	0	0	0	0.55359	1	6895	6895		47.657	0	1	2086900	+		58269	17908	48073	48118	63886	63886					0.06510326093894037
TVFFVPAPAR	10	Unmodified	_TVFFVPAPAR_					0	0	0			REV__ENSG00000108846|ENST00000285238|ABCC3	REV__ENSG00000108846|ENST00000285238|ABCC3	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	552.813659	1103.61277	-0.29401	-0.00016253	0.090121	4.982E-05	-0.20389	-0.00011271	552.8135393260636	71.397	0.72727	71.397	71.15	71.877	0	0	0	NaN	47.657	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2086900	+		58270	17908	48073	48118							0.06510326093894037
TVFGILLLA	9	Unmodified	_TVFGILLLA_					0	0	0			REV__tr|A0A553SSE2|A0A553SSE2_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_02885PE=3SV=1	REV__tr|A0A553SSE2|A0A553SSE2_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_02885PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.25	2	473.802229	945.589904	-0.30798	-0.00014592	-4.2793	-0.0020275	-4.5873	-0.0021735	473.8000805845248	41.86	0.92115	38.88	38.645	39.566	-2.9804					36	17	3	0	0	0	0.027462	1	1895	1895		42.474	0	1	78085	+		58271	30828	48074	48119	63887	63887					0.11493306976410622
TVFKIVSPTP	10	Unmodified	_TVFKIVSPTP_					0	0	0			REV__nc|ENSG00000158711|P28324-2|ELK4	REV__nc|ENSG00000158711|P28324-2|ELK4	MULTI-MSMS	OvCa9_classI_Rep2	2	544.8208618164062	2	544.82115	1087.62775	-1.048	-0.000571	1.0059	0.00054802	-0.042178	-2.298E-05	544.8215950523165	116.13	1.386	116.01	115.64	117.02	-0.11777					79	27	4	0	0	0	0.48398	1	11099	11099		56.434	3.3448	1	386720	+		58272	20579	48075	48120	63888	63888					0.08743773171249813
TVFKPGPPGN	10	Unmodified	_TVFKPGPPGN_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OvCa9_classI_Rep3	3	507.27398681640625	2	507.274367	1012.53418	-0.32482	-0.00016478	0.42812	0.00021717	0.10329	5.2398E-05	507.2744775445949	108.1	1.1293	106.91	106.64	107.77	-1.1978					63	21	4	0	0	0	0.42962	1	7724	7724		64.207	2.0999	1	500160			58273	5793;36288	48076	48121	63889	63889					0.028414737888056152
TVFLIWGEV	9	Unmodified	_TVFLIWGEV_					0	0	0			REV__nc|ENSG00000265241|Q9Y5S9-2|RBM8A	REV__nc|ENSG00000265241|Q9Y5S9-2|RBM8A	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.80859375	2	532.294768	1062.57498	2.5188	0.0013408	-3.6773	-0.0019574	-1.1584	-0.00061662	532.2924775440068	116.25	0.45777	116.25	115.96	116.42	0					14	9	2	0	0	0	0.027343	1	13286	13286		68.787	0	1	158280	+		58274	23583	48077	48122	63890	63890					0.04619815108412695
TVFPEIADK	9	Unmodified	_TVFPEIADK_					0	0	0		tr|A0A7D6VQR2|A0A7D6VQR2_9CLOTPyruvate:ferredoxinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=nifJPE=3SV=1	tr|A0A7D6VQR2|A0A7D6VQR2_9CLOTPyruvate:ferredoxinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=nifJPE=3SV=1	tr|A0A7D6VQR2|A0A7D6VQR2_9CLOTPyruvate:ferredoxinoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=nifJPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.8055114746094	2	510.274032	1018.53351	-0.5655	-0.00028856	0.18468	9.4239E-05	-0.38082	-0.00019432	510.2737349201269	77.233	0.97075	74.416	74.096	75.067	-2.8165					28	19	4	0	0	0	0.027461	1	6221	6221		40.778	0	1	144100			58275	34865	48078	48123	63891	63891					0.02498634349092299
TVFPLGTLAAV	11	Unmodified	_TVFPLGTLAAV_					0	0	0			REV__ENSG00000091483|ENST00000366560|FH	REV__ENSG00000091483|ENST00000366560|FH	MULTI-MSMS	OvCa9_classI_Rep4_	4	544.8207397460938	2	544.82115	1087.62775	-0.96512	-0.00052582	0.77423	0.00042182	-0.19089	-0.000104	544.8214508612447	117.3	1.5207	115.94	115.51	117.03	-1.3645					81	28	4	0	0	0	0.48738	1	10976	10976		54.776	3.4409	1	408830	+		58276	17250	48079	48124	63892	63892					0.08743773171227076
TVFPLRSSI	9	Unmodified	_TVFPLRSSI_					0	0	0			REV__ENST00000481849.5_1_6:31321970-31322072:-|nuORF	REV__ENST00000481849.5_1_6:31321970-31322072:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.2978210449219	2	510.297842	1018.58113	-0.79253	-0.00040442	0.9377	0.0004785	0.14517	7.4079E-05	510.29822279583277	99.406	0.92838	97.081	96.639	97.568	-2.3253					40	17	3	0	0	0	0.21231	1	8867	8867		74.255	2.3776	1	220600	+		58277	26490	48080	48125	63893	63893					0.07258333339939327
TVGARFPH	8	Unmodified	_TVGARFPH_					0	0	0		ENSG00000120332|ENST00000239462|TNN	ENSG00000120332|ENST00000239462|TNN	ENSG00000120332|ENST00000239462|TNN	MULTI-SECPEP	OvCa99_classI_Rep5	1	442.28717041015625	2	442.740494	883.466435	0.25303	0.00011202	-0.041208	-1.8244E-05	0.21182	9.378E-05	442.740293366847	66.133	0.62372	66.133	65.867	66.491	0					23	15	2	0	0	0	0.028476	1	6092	6092		16.473	0	1	754370			58278	3428	48081	48126	63894	63894					0.020040686486595405
TVGDEGADTPV	11	Unmodified	_TVGDEGADTPV_					0	0	0		nc|ENSG00000204371|Q96KQ7-3|EHMT2;nc|ENSG00000204371|Q96KQ7-2|EHMT2;ENSG00000204371|ENST00000375537|EHMT2;ENSG00000204371.11,EHMT2,chr6,-,I1.1,31897223,31897635|102|15.78|4|intron;ENSG00000204371.11,EHMT2,chr6,-,I1.1,31897223,31897635|102|15.78|3|intron;ENSG00000204371.11,EHMT2,chr6,-,I1.1,31897223,31897635|102|15.78|1|intron;ENSG00000204371.11,EHMT2,chr6,-,I1.1,31897223,31897635|102|15.78|2|intron	nc|ENSG00000204371|Q96KQ7-3|EHMT2	nc|ENSG00000204371|Q96KQ7-3|EHMT2	MULTI-MSMS	OvCa99_classI_Rep5	1	530.7442016601562	2	530.743293	1059.47203	-0.59845	-0.00031762	0.37189	0.00019738	-0.22656	-0.00012024	530.7434016920582	41.651	0.86621	41.651	41.42	42.286	0					39	19	4	0	0	0	0.20195	1	2617	2617		79.713	0	1	997320			58279	8976	48082	48127	63895	63895					-0.0553234214087297
TVGEELAGGPS	11	Unmodified	_TVGEELAGGPS_					0	0	0			REV__ENST00000563517.5_1_15:43663421-43663523:+|nuORF	REV__ENST00000563517.5_1_15:43663421-43663523:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.2460632324219	2	508.748379	1015.4822	-0.45882	-0.00023342	1.5521	0.00078965	1.0933	0.00055623	508.74904280747967	35.266	0.74692	35.266	35.052	35.799	0					26	15	3	0	0	0	0.025298	1	1823	1823		56.721	17.468	1	515520	+		58280	27658	48083	48128	63896	63896					-0.0249173441561652
TVGEGIRIW	9	Unmodified	_TVGEGIRIW_					0	0	0		PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant;ENSG00000205038|ENST00000378402|PKHD1L1	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.3110961914062	2	515.787641	1029.56073	-1.781	-0.00091864	2.0352	0.0010498	0.2542	0.00013111	515.7884516518343	35.003	0.99264	32.293	32.059	33.052	-2.7097					39	19	4	0	0	0	0.027433	1	1449	1449		34.173	0	1	74809			58281	9047	48084	48129	63897	63897					0.04713162680127425
TVGETREPSK	10	Unmodified	_TVGETREPSK_					0	0	0			REV__ENSG00000174776|ENST00000682715|WDR49	REV__ENSG00000174776|ENST00000682715|WDR49	MULTI-MSMS	OvCa99_classI_Rep5	1	552.2869873046875	2	552.288202	1102.56185	-0.47056	-0.00025989	0.32368	0.00017876	-0.14688	-8.1122E-05	552.288277160636	42.687	0.98272	42.687	42.453	43.435	0					56	22	4	0	0	0	0.44431	1	2779	2779		62.107	0	1	3313400	+		58282	21851	48085	48130	63898	63898					0.01467332258357601
TVGGGLVWVF	10	Unmodified	_TVGGGLVWVF_					0	0	0			REV__SLC7A10|p.V320Pfs*36|1|0.04|ENSG00000130876|chr19:33211280-33211283|AGAC/-|frameshift_variant	REV__SLC7A10|p.V320Pfs*36|1|0.04|ENSG00000130876|chr19:33211280-33211283|AGAC/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.8153686523438	2	517.78711	1033.55967	0.098201	5.0847E-05	3.0645	0.0015868	3.1627	0.0016376	518.2890252311048	115.27	1.0581	113.88	113.36	114.42	-1.3977					35	20	3	0	0	0	0.027056	1	10740	10740		27.882	6.1799	1	19182	+		58283	18979	48086	48131	63899	63899					0.04422948311230357
TVGGGLVWVF	10	Unmodified	_TVGGGLVWVF_					0	0	0			REV__SLC7A10|p.V320Pfs*36|1|0.04|ENSG00000130876|chr19:33211280-33211283|AGAC/-|frameshift_variant	REV__SLC7A10|p.V320Pfs*36|1|0.04|ENSG00000130876|chr19:33211280-33211283|AGAC/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	517.78711	1033.55967	0.3389	0.00017548	3.468	0.0017957	3.8069	0.0019712	518.2883560114328	114.12	0.59165	114	113.76	114.35	-0.11777	0.064149	0.00020929	NaN	14.865	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16339	+		58284	18979	48086	48131							0.04422948311230357
TVGIPQLSV	9	Unmodified	_TVGIPQLSV_					0	0	0		ENST00000455773.7_1_10:12279256-12291616:+|nuORF	ENST00000455773.7_1_10:12279256-12291616:+|nuORF	ENST00000455773.7_1_10:12279256-12291616:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.314453125	2	457.271293	912.528032	0.074754	3.4183E-05	0.94303	0.00043122	1.0178	0.00046541	457.2716181268703	71.518	0.5294	71.518	71.427	71.956	0					22	12	2	0	0	0	0.027462	1	6938	6938		30.318	10.958	1	322530			58285	12100	48087	48132	63900	63900					0.06826955557289693
TVGKEGVET	9	Unmodified	_TVGKEGVET_					0	0	0			REV__nc|ENSG00000124574|Q5T3U5-2|ABCC10	REV__nc|ENSG00000124574|Q5T3U5-2|ABCC10	MULTI-SECPEP	OvCa99_classI_Rep5	1	460.7818298339844	2	460.24019	918.465826	-0.68073	-0.0003133	-1.7483	-0.00080462	-2.429	-0.0011179	460.2396637179485	43.414	0.76842	43.414	43.227	43.995	0					31	17	3	0	0	0	0.027461	1	2849	2849		25.574	0	1	289780	+		58286	18695	48088	48133	63901	63901					0.0033318441828669165
TVGLIRNL	8	Unmodified	_TVGLIRNL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OvCa99_classI_Rep5	1	443.2806701660156	2	443.279452	884.544351	3.9991	0.0017727	-1.4537	-0.00064442	2.5453	0.0011283	443.2786842362288	87.887	2.8762	87.887	87.505	90.382	0					159	69	3	0	0	0	0.083813	7	9418	9301;9329;9358;9388;9418;9448;9482		147.69	9.2942	1	8389300			58287	6867	48089	48134	63902;63903;63904;63905;63906;63907;63908	63906					0.09746081514037996
TVGLRRLR	8	Unmodified	_TVGLRRLR_					0	0	0		ENST00000393283.5_1_2:110551884-110551998:+|nuORF	ENST00000393283.5_1_2:110551884-110551998:+|nuORF	ENST00000393283.5_1_2:110551884-110551998:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.7850036621094	2	485.817067	969.619582	2.1631	0.0010509	2.3947	0.0011634	4.5578	0.0022142	485.8188785234511	86.932	0.25256	86.932	86.844	87.096	0					6	5	2	0	0	0	0.028476	1	9176	9176		29.15	1.2673	1	77324			58288	11243	48090	48135	63909	63909					0.13355683765132653
TVGNRIFQK	9	Unmodified	_TVGNRIFQK_					0	0	0			REV__tr|A0A553SFN7|A0A553SFN7_NIACIGTP3',8-cyclaseOS=NialliacirculansOX=1397GN=moaAPE=3SV=1	REV__tr|A0A553SFN7|A0A553SFN7_NIACIGTP3',8-cyclaseOS=NialliacirculansOX=1397GN=moaAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8062744140625	2	531.806365	1061.59818	-0.15092	-8.026E-05	-0.093261	-4.9597E-05	-0.24418	-0.00012986	531.8061431998083	41.419	1.3311	38.709	38.438	39.769	-2.7097					48	26	3	0	0	0	0.27001	1	2166	2166		66.429	6.1353	1	199510	+		58289	29598	48091	48136	63910	63910					0.06984253945756791
TVGRWLDL	8	Unmodified	_TVGRWLDL_					0	0	0		ENSG00000162460|ENST00000375782|TMEM82	ENSG00000162460|ENST00000375782|TMEM82	ENSG00000162460|ENST00000375782|TMEM82	MULTI-SECPEP	OvCa9_classI_Rep3	3	479.7881774902344	2	480.269084	958.523616	-0.49489	-0.00023768	0.9644	0.00046317	0.46951	0.00022549	480.2694368357361	77.631	1.4123	75.279	74.89	76.303	-2.3527					53	27	2	0	0	0	0.028476	1	4140	4140		26.693	3.6504	1	629810			58290	6184	48092	48137	63911	63911					0.04269491134380132
TVGVMRDPE	9	Unmodified	_TVGVMRDPE_					0	0	0		ENST00000261653.10_1_12:131276234-131276321:-|nuORF	ENST00000261653.10_1_12:131276234-131276321:-|nuORF	ENST00000261653.10_1_12:131276234-131276321:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.26983642578125	2	502.247492	1002.48043	1.8514	0.00092986	-3.7895	-0.0019032	-1.9381	-0.00097338	502.24528676270063	83.84	0.63226	83.84	83.588	84.22	0					28	14	3	0	0	0	0.027462	1	8752	8752		29.15	0	1	594250			58291	9870	48093	48138	63912	63912					-0.020710667052185272
TVHQVTEAF	9	Unmodified	_TVHQVTEAF_					0	0	0		ENSG00000136143|ENST00000646932|SUCLA2;nc|ENSG00000136143|Q9P2R7-2|SUCLA2;ENST00000425839.1_1_6:30437447-30438005:+|nuORF	ENSG00000136143|ENST00000646932|SUCLA2	ENSG00000136143|ENST00000646932|SUCLA2	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.7861938476562	2	516.261456	1030.50836	-0.0398	-2.0547E-05	1.3242	0.00068365	1.2844	0.0006631	516.2620142683083	77.91	0.93972	76.121	75.675	76.614	-1.7894					27	17	2	0	0	0	0.027455	1	6531	6531		51.335	8.9393	1	21884			58292	4461	48094	48139	63913	63913					-0.005674204534898308
TVHVLQQSNF	10	Unmodified	_TVHVLQQSNF_					0	0	0			REV__nc|ENSG00000116698|Q92540-4|SMG7	REV__nc|ENSG00000116698|Q92540-4|SMG7	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.806396484375	2	586.806562	1171.59857	-6.8597	-0.0040253	0.93898	0.000551	-5.9207	-0.0034743	586.8069299890403	160.36	3.1265	158.75	158.28	161.4	-1.61					144	76	3	0	0	0	0.75313	1	15960	15960		24.519	0	1	162470	+		58293	28813	48095	48140	63914	63914					0.019636288749325104
TVIAKELAL	9	Unmodified	_TVIAKELAL_					0	0	0			REV__tr|A0A553SJ97|A0A553SJ97_NIACICopper-exportingP-typeATPaseOS=NialliacirculansOX=1397GN=CEQ21_16430PE=3SV=1	REV__tr|A0A553SJ97|A0A553SJ97_NIACICopper-exportingP-typeATPaseOS=NialliacirculansOX=1397GN=CEQ21_16430PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	479.2807922363281	2	479.302593	956.590633	-0.40245	-0.0001929	-0.95012	-0.00045539	-1.3526	-0.00064829	479.3018897401414	96.039	0.69189	94.21	93.93	94.621	-1.8286					20	13	2	0	0	0	0.027137	1	6308	6308		90.37	5.4543	1	54164	+		58294	29980	48096	48141	63915	63915					0.1106010162544635
TVIDVSGKF	9	Unmodified	_TVIDVSGKF_					0	0	0			REV__tr|A0A7D7A300|A0A7D7A300_9CLOTMBLfoldmetallo-hydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21495PE=4SV=1	REV__tr|A0A7D7A300|A0A7D7A300_9CLOTMBLfoldmetallo-hydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21495PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	482.2861328125	2	483.26875	964.522947	0.30528	0.00014753	-2.1532	-0.0010406	-1.848	-0.00089306	483.2672254036068	90.282	0.45293	87.707	87.348	87.801	-2.575					11	8	2	0	0	0	0.027462	1	7741	7741		42.396	0	1	12624	+		58295	32561	48097	48142	63916	63916					0.03926651694678185
TVIGRERRPR	10	Unmodified	_TVIGRERRPR_					0	0	0		ENSG00000140505|ENST00000343932|CYP1A2	ENSG00000140505|ENST00000343932|CYP1A2	ENSG00000140505|ENST00000343932|CYP1A2	MSMS	OvCa99_classI_Rep5	1	620.3694458007812	2	620.373269	1238.73199	NaN	NaN	NaN	NaN	NaN	NaN	NaN	155.55	1	155.55	155.05	156.05	0								0	0	0	0.1365	1	18227	18227		27.882	2.3082	1				58296	4850	48098	48143	63917	63917					0.12216912771305033
TVIHRNFPPRY	11	Unmodified	_TVIHRNFPPRY_					0	0	0			REV__ENSG00000203857|ENST00000369413|HSD3B1	REV__ENSG00000203857|ENST00000369413|HSD3B1	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.25775146484375	3	467.257961	1398.75205	-0.77916	-0.00036407	-2.3405	-0.0010936	-3.1197	-0.0014577	467.2567938000786	54.081	1.5384	50.833	50.466	52.004	-3.2474					91	29	5	0	0	0	0.68391	1	3347	3347		35.178	10.052	1	312640	+		58297	23115	48099	48144	63918	63918					0.0686266371126294
TVIHRNFPPRY	11	Unmodified	_TVIHRNFPPRY_					0	0	0			REV__ENSG00000203857|ENST00000369413|HSD3B1	REV__ENSG00000203857|ENST00000369413|HSD3B1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		3	467.257961	1398.75205	-0.77916	-0.00036407	-2.3405	-0.0010936	-3.1197	-0.0014577	467.2567938000786	54.081	1.5384	50.833	50.466	52.004	-3.2474	-0.046296	-0.00017401	NaN	35.178	91	29	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	312640	+		58298	23115	48099	48144							0.0686266371126294
TVIIATKK	8	Unmodified	_TVIIATKK_					0	0	0		nc|ENSG00000132530|Q6GPH4-7|XAF1	nc|ENSG00000132530|Q6GPH4-7|XAF1	nc|ENSG00000132530|Q6GPH4-7|XAF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	437.2611389160156	2	437.292028	872.569503	-1.2393	-0.00054192	-2.8901	-0.0012638	-4.1294	-0.0018058	437.29162545162177	50.352	0.41675	47.211	47.079	47.496	-3.1416					10	7	2	0	0	0	0.028476	1	2917	2917		55.504	9.5523	1	8465.8			58299	15017	48100	48145	63919	63919					0.12812136316620126
TVILHAVRI	9	Unmodified	_TVILHAVRI_					0	0	0		nc|ENSG00000141161|Q8IWX7-2|UNC45B;ENSG00000141161|ENST00000394570|UNC45B;nc|ENSG00000141161|Q8IWX7|UNC45B;UNC45B|p.S288Rfs*13|1|0.06|ENSG00000141161|chr17:35159430-35159430|C/-|frameshift_variant;UNC45B|p.D311Afs*18|1|0.11|ENSG00000141161|chr17:35159498-35159498|A/-|frameshift_variant;UNC45B|p.N461Kfs*71|1|0.14|ENSG00000141161|chr17:35168291-35168292|-/GGGCAACATAGCAAGATCCCATC|frameshift_variant	nc|ENSG00000141161|Q8IWX7-2|UNC45B	nc|ENSG00000141161|Q8IWX7-2|UNC45B	MULTI-MSMS	OvCa9_classI_Rep2	2	511.3269958496094	2	511.329476	1020.6444	-3.9215	-0.0020052	-0.26328	-0.00013462	-4.1848	-0.0021398	511.32921715256015	153.82	1.2958	153.59	153.28	154.58	-0.22696					76	27	4	0	0	0	0.55588	1	15643	15643		37.159	0	1	348680			58300	4897	48101	48146	63920	63920					0.13490318847846083
TVIPPTLNPVI	11	Unmodified	_TVIPPTLNPVI_					0	0	0		ENSG00000204695|ENST00000641895|OR14J1	ENSG00000204695|ENST00000641895|OR14J1	ENSG00000204695|ENST00000641895|OR14J1	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.2802124023438	2	582.355357	1162.69616	-1.1226	-0.00065375	2.2504	0.0013105	1.1278	0.00065679	582.3571954916973	41.961	0.17303	41.961	41.809	41.982	0					5	3	2	0	0	0	0.025746	1	2662	2662		13.454	6.7185	1	50535			58301	9021	48102	48147	63921	63921					0.12132017751082458
TVIQNDLEV	9	Unmodified	_TVIQNDLEV_					0	0	0			REV__ENSG00000132465|ENST00000254801|JCHAIN	REV__ENSG00000132465|ENST00000254801|JCHAIN	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7762451171875	2	515.774396	1029.53424	0.02014	1.0388E-05	-0.50256	-0.00025921	-0.48242	-0.00024882	515.7741016742568	109.64	0.94768	107.92	107.58	108.52	-1.7256					43	17	3	0	0	0	0.28934	1	10073	10073		64.207	2.0999	1	240840	+		58302	19079	48103	48148	63922	63922					0.02065428998139396
TVIRHPLSL	9	Unmodified	_TVIRHPLSL_					0	0	0			REV__ENST00000394963.8_1_12:50493795-50494071:+|nuORF	REV__ENST00000394963.8_1_12:50493795-50494071:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.8195190429688	2	518.319109	1034.62366	0.1961	0.00010164	1.1875	0.00061553	1.3836	0.00071717	518.319829749073	78.321	1.3687	76.582	76.196	77.565	-1.7398					62	26	3	0	0	0	0.027462	1	6583	6583		34.173	5.9183	1	266660	+		58303	25305	48104	48149	63923	63923					0.10773728468188892
TVISVLLHL	9	Unmodified	_TVISVLLHL_					0	0	0		L1PA11_dup257|chr1:220255199-220257096:+|1.2080698086480397|0.4810012897383803|1.33|429.0|108|3|anti-sense	L1PA11_dup257|chr1:220255199-220257096:+|1.2080698086480397|0.4810012897383803|1.33|429.0|108|3|anti-sense	L1PA11_dup257|chr1:220255199-220257096:+|1.2080698086480397|0.4810012897383803|1.33|429.0|108|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	497.8193359375	2	497.81841	993.622267	0.76823	0.00038244	1.5475	0.00077035	2.3157	0.0011528	497.8189479464394	139.9	0.60818	139.9	139.61	140.22	0					23	12	3	0	0	0	0.27546	1	16335	16335		65.803	0	1	197490			58304	14647	48105	48150	63924	63924					0.12520094379431157
TVITLHSAC	9	Unmodified	_TVITLHSAC_					0	0	0			REV__ENSG00000255012|ENST00000641076|OR5M1	REV__ENSG00000255012|ENST00000641076|OR5M1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.747314453125	2	472.747127	943.479702	0.13301	6.288E-05	-1.0276	-0.00048578	-0.89456	-0.0004229	472.74638021746745	117.62	0.52225	116.27	116	116.52	-1.3444					14	9	2	0	0	0	0.027462	1	10972	10972		17.365	0	1	18120	+		58305	23521	48106	48151	63925	63925					0.00570138645730367
TVKCAAYLIHS	11	Unmodified	_TVKCAAYLIHS_					0	0	0		ENST00000435510.6_1_10:64914094-64914229:+|nuORF	ENST00000435510.6_1_10:64914094-64914229:+|nuORF	ENST00000435510.6_1_10:64914094-64914229:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	402.25738525390625	3	402.549753	1204.62743	0.32706	0.00013166	4.2745	0.0017207	4.6016	0.0018524	402.551603126067	63.56	1.0995	60.816	60.374	61.473	-2.7444					31	20	2	0	0	0	0.025457	1	4805	4805		32.034	13.503	1	26365			58306	11861	48107	48152	63926	63926					0.033300301797225984
TVKDMYLF	8	Unmodified	_TVKDMYLF_					0	0	0		nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4	nc|ENSG00000128815|Q6ZS81-4|WDFY4	nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.3030090332031	2	508.759704	1015.50485	-1.1028	-0.00056106	-0.44067	-0.00022419	-1.5435	-0.00078525	508.7590125363117	82.131	0.505	79.835	79.584	80.089	-2.2963					23	9	3	0	0	0	0.028476	1	4607	4607		37.028	8.7742	1	68731			58307	3905	48108	48153	63927	63927					-0.0022780655170890896
TVKHKILVL	9	Unmodified	_TVKHKILVL_					0	0	0		ENST00000574137.1_1_16:10837720-10851732:+|nuORF;ENST00000571790.5_1_16:10837720-10857402:+|nuORF;nc|ENSG00000103274|P53384-2|NUBP1;ENSG00000103274|ENST00000283027|NUBP1	ENST00000574137.1_1_16:10837720-10851732:+|nuORF	ENST00000574137.1_1_16:10837720-10851732:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	525.8549194335938	2	525.855327	1049.6961	0.76961	0.00040471	-1.024	-0.0005385	-0.25443	-0.0001338	525.8546110101726	126.86	1.8772	126.62	126.29	128.17	-0.2359					94	37	4	0	0	0	0.5811	3	12407	12407;12413;12420		34.173	0	1	231030			58308	2303	48109	48154	63928;63929;63930	63928					0.17324062541752028
TVKIDKSTK	9	Unmodified	_TVKIDKSTK_					0	0	0			REV__tr|A0A7D6VS35|A0A7D6VS35_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03420PE=4SV=1	REV__tr|A0A7D6VS35|A0A7D6VS35_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03420PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	510.8377685546875	2	510.308406	1018.60226	-0.69551	-0.00035493	-1.3235	-0.00067541	-2.019	-0.0010303	510.80899755475133	75.696	1.6485	73.286	72.87	74.519	-2.4106					81	31	4	0	0	0	0.027462	1	3878	3878		30.318	0	1	440500	+		58309	31464	48110	48155	63931	63931					0.09370298648798325
TVKILRVEV	9	Unmodified	_TVKILRVEV_					0	0	0		nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;ENSG00000262576|ENST00000571252|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7528686523438	2	528.842416	1055.67028	1.6758	0.00088623	-0.4712	-0.00024919	1.2046	0.00063704	528.842020640406	98.064	0.59782	98.064	97.954	98.552	0					24	13	3	0	0	0	0.027462	1	10847	10847		24.519	0	1	996880			58310	9509	48111	48156	63932	63932					0.14467168299461264
TVKIQASKL	9	Unmodified	_TVKIQASKL_					0	0	0			REV__tr|A0A553SIM5|A0A553SIM5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15150PE=4SV=1	REV__tr|A0A553SIM5|A0A553SIM5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15150PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	494.78216552734375	2	494.313492	986.612431	-0.30698	-0.00015174	-0.62561	-0.00030925	-0.93259	-0.00046099	494.3130438700046	60.124	2.0939	57.354	56.83	58.924	-2.7702					110	39	4	0	0	0	0.027411	1	4590	4590		64.207	5.4253	1	947420	+		58311	29907	48112	48157	63933	63933					0.11858906374038725
TVKIQASKL	9	Unmodified	_TVKIQASKL_					0	0	0			REV__tr|A0A553SIM5|A0A553SIM5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15150PE=4SV=1	REV__tr|A0A553SIM5|A0A553SIM5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15150PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	494.313492	986.612431	0.37209	0.00018393	-1.4979	-0.00074042	-1.1258	-0.00055649	494.3126474612091	60.849	1.944	57.419	56.996	58.94	-3.43	0.032724	-0.00049342	NaN	64.207	101	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2337500	+		58312	29907	48112	48157							0.11858906374038725
TVKLGSCAGKK	11	Unmodified	_TVKLGSCAGKK_					0	0	0			REV__nc|ENSG00000188175|A8MVW5-3|HEPACAM2	REV__nc|ENSG00000188175|A8MVW5-3|HEPACAM2	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.3154907226562	2	546.315709	1090.61686	-0.88497	-0.00048347	-3.408	-0.0018619	-4.293	-0.0023453	546.3137616273688	74.115	2.2561	70.884	70.095	72.351	-3.2308					83	46	3	0	0	0	0.21979	1	5786	5786		77.318	7.69	1	1085600	+		58313	29064	48113	48158	63934	63934					0.0751804752528642
TVKLPVIVYE	10	Unmodified	_TVKLPVIVYE_					0	0	0		tr|A0A553STE7|A0A553STE7_NIACIPermeaseOS=NialliacirculansOX=1397GN=CEQ21_04820PE=3SV=1	tr|A0A553STE7|A0A553STE7_NIACIPermeaseOS=NialliacirculansOX=1397GN=CEQ21_04820PE=3SV=1	tr|A0A553STE7|A0A553STE7_NIACIPermeaseOS=NialliacirculansOX=1397GN=CEQ21_04820PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.7743530273438	2	580.849907	1159.68526	-0.23306	-0.00013537	-3.1246	-0.0018149	-3.3577	-0.0019503	580.8478289455143	62.641	0.522	62.641	62.294	62.816	0					22	12	2	0	0	0	0.026931	1	5603	5603		30.318	0	1	877380			58314	34479	48114	48159	63935	63935					0.1118061537677022
TVKMMYQKKKF	11	Unmodified	_TVKMMYQKKKF_					0	0	0		SERPINB1-RNPEP|1|fusion;nc|ENSG00000021355|P30740-2|SERPINB1;ENSG00000021355|ENST00000380739|SERPINB1	SERPINB1-RNPEP|1|fusion	SERPINB1-RNPEP|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	477.9349670410156	3	477.933209	1430.7778	1.0304	0.00049248	2.9612	0.0014153	3.9916	0.0019077	477.9346027351994	70.553	2.1532	67.834	67.549	69.702	-2.7196					131	42	5	0	0	0	0.70032	1	3247	3247		29.551	6.1728	1	1423100			58315	32812	48115	48160	63936	63936					0.07964053846990282
TVKQRKQYRRL	11	Unmodified	_TVKQRKQYRRL_					0	0	0		ENST00000424326.5_1_2:167262092-167297919:-|nuORF;ENSG00000136546|ENST00000643258|SCN7A	ENST00000424326.5_1_2:167262092-167297919:-|nuORF	ENST00000424326.5_1_2:167262092-167297919:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.6347961425781	3	492.635431	1474.88446	-6.2177	-0.0030631	3.97	0.0019558	-2.2477	-0.0011073	492.63727713835067	161.54	1.8887	159.91	158.52	160.4	-1.6239					108	42	3	0	0	0	0.72552	1	15941	15941		8.7993	2.7983	1	60954			58316	4498	48116	48161	63937	63937					0.1660168844805412
TVKRDYEL	8	Unmodified	_TVKRDYEL_					0	0	0			REV__tr|A0A553SQR5|A0A553SQR5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07140PE=4SV=1	REV__tr|A0A553SQR5|A0A553SQR5_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07140PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.278564453125	2	512.277106	1022.53966	0.33151	0.00016983	3.0005	0.0015371	3.332	0.0017069	512.2784840178991	113.37	2.0485	111.93	111.26	113.31	-1.4461					104	40	3	0	0	0	0.57734	1	10548	10548		68.787	10.976	1	322470	+		58317	30634	48117	48162	63938	63938					0.029291525806115715
TVKYPEAFL	9	Unmodified	_TVKYPEAFL_					0	0	0			REV__nc|ENSG00000072364|Q9UHB7-3|AFF4	REV__nc|ENSG00000072364|Q9UHB7-3|AFF4	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.3110961914062	2	534.292225	1066.5699	-0.75525	-0.00040353	-2.9561	-0.0015794	-3.7113	-0.0019829	534.2905469794578	123.52	1.4282	123.29	123.09	124.52	-0.23193					43	28	3	0	0	0	0.027448	1	12055	12055		53.351	0	1	37315	+		58318	15577	48118	48163	63939	63939					0.03927511245797177
TVLARLVSN	9	Unmodified	_TVLARLVSN_					0	0	0		chr19:10924192-10924973|229|13.95|0.82|4.09|-|1|TE_info:AluSx,AluSx_dup105070,Alu,SINE,donor,+,10924973,10925249|YIPF2,None|5;AluSg_dup10986|chr5:139541320-139541621:+|1.2638567123831594|0.0219595126026593|5.85|414.0|13|1|anti-sense	chr19:10924192-10924973|229|13.95|0.82|4.09|-|1|TE_info:AluSx,AluSx_dup105070,Alu,SINE,donor,+,10924973,10925249|YIPF2,None|5	chr19:10924192-10924973|229|13.95|0.82|4.09|-|1|TE_info:AluSx,AluSx_dup105070,Alu,SINE,donor,+,10924973,10925249|YIPF2,None|5	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.7793884277344	2	486.795466	971.57638	-1.254	-0.00061043	4.4427	0.0021627	3.1888	0.0015523	486.7975010285932	91.079	0.35104	89.055	88.829	89.18	-2.0241					14	6	3	0	0	0	0.027462	1	5689	5689		32.812	0	1	57544			58319	71	48119	48164	63940	63940					0.08945449197187827
TVLDKLTTL	9	Unmodified	_TVLDKLTTL_					0	0	0		tr|A0A7D6ZF91|A0A7D6ZF91_9CLOTFlagellarhook-lengthcontrolproteinFliKOS=ClostridiumintestinaleOX=36845GN=HZF06_16855PE=4SV=1	tr|A0A7D6ZF91|A0A7D6ZF91_9CLOTFlagellarhook-lengthcontrolproteinFliKOS=ClostridiumintestinaleOX=36845GN=HZF06_16855PE=4SV=1	tr|A0A7D6ZF91|A0A7D6ZF91_9CLOTFlagellarhook-lengthcontrolproteinFliKOS=ClostridiumintestinaleOX=36845GN=HZF06_16855PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.2918701171875	2	502.305332	1002.59611	-0.1477	-7.4189E-05	-0.32833	-0.00016492	-0.47603	-0.00023911	502.3051351731317	122.63	0.84292	121.26	121.01	121.85	-1.3666					29	16	2	0	0	0	0.027432	1	11602	11602		58.23	3.4536	1	50370			58320	35503	48120	48165	63941	63941					0.09491780417272366
TVLDKLTTL	9	Unmodified	_TVLDKLTTL_					0	0	0		tr|A0A7D6ZF91|A0A7D6ZF91_9CLOTFlagellarhook-lengthcontrolproteinFliKOS=ClostridiumintestinaleOX=36845GN=HZF06_16855PE=4SV=1	tr|A0A7D6ZF91|A0A7D6ZF91_9CLOTFlagellarhook-lengthcontrolproteinFliKOS=ClostridiumintestinaleOX=36845GN=HZF06_16855PE=4SV=1	tr|A0A7D6ZF91|A0A7D6ZF91_9CLOTFlagellarhook-lengthcontrolproteinFliKOS=ClostridiumintestinaleOX=36845GN=HZF06_16855PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	502.305332	1002.59611	0.95923	0.00048183	-1.0338	-0.00051929	-0.074584	-3.7464E-05	502.3048085991049	122.29	0.78691	121.26	121.01	121.79	-1.0286	0.022018	-0.0010209	NaN	58.23	26	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49050			58321	35503	48120	48165							0.09491780417272366
TVLDKQIM	8	Unmodified	_TVLDKQIM_					0	0	0		ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	ENSG00000174010|ENST00000328046|KLHL15	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.2661437988281	2	474.265153	946.515753	-0.67318	-0.00031927	-0.063803	-3.0259E-05	-0.73698	-0.00034953	474.26492330135903	72.48	1.1171	69.084	68.716	69.833	-3.3961					60	22	4	0	0	0	0.42208	1	5572	5572		85.359	3.0545	1	452920			58322	7433	48121	48166	63942	63942					0.04035595822585947
TVLDVNDNAPE	11	Unmodified	_TVLDVNDNAPE_					0	0	0		PCDHGA7|p.L604Ifs*113|1|0.17|ENSG00000253537|chr5:141384708-141384709|-/ATAGACGTGGAAATAATAGATATTAATGACAA|frameshift_variant;nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7;ENSG00000253537|ENST00000518325|PCDHGA7;nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2;nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3;ENSG00000254245|ENST00000253812|PCDHGA3;ENSG00000081853|ENST00000394576|PCDHGA2;nc|ENSG00000253159|O60330-2|PCDHGA12;ENSG00000253159|ENST00000252085|PCDHGA12	PCDHGA7|p.L604Ifs*113|1|0.17|ENSG00000253537|chr5:141384708-141384709|-/ATAGACGTGGAAATAATAGATATTAATGACAA|frameshift_variant;nc|ENSG00000253159|O60330-2|PCDHGA12	PCDHGA7|p.L604Ifs*113|1|0.17|ENSG00000253537|chr5:141384708-141384709|-/ATAGACGTGGAAATAATAGATATTAATGACAA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	594.2867431640625	2	593.78295	1185.55135	2.4448	0.0014517	0.74389	0.00044171	3.1887	0.0018934	593.7832459220957	120.89	0.59621	120.89	120.7	121.29	0					32	13	5	0	0	0	0.13051	1	13915	13915		90.601	0.23104	1	1170000			58323	9433;9425	48122	48167	63943	63943					-0.03400695186724079
TVLDVNDNAPE	11	Unmodified	_TVLDVNDNAPE_					0	0	0		PCDHGA7|p.L604Ifs*113|1|0.17|ENSG00000253537|chr5:141384708-141384709|-/ATAGACGTGGAAATAATAGATATTAATGACAA|frameshift_variant;nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7;ENSG00000253537|ENST00000518325|PCDHGA7;nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2;nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3;ENSG00000254245|ENST00000253812|PCDHGA3;ENSG00000081853|ENST00000394576|PCDHGA2;nc|ENSG00000253159|O60330-2|PCDHGA12;ENSG00000253159|ENST00000252085|PCDHGA12	PCDHGA7|p.L604Ifs*113|1|0.17|ENSG00000253537|chr5:141384708-141384709|-/ATAGACGTGGAAATAATAGATATTAATGACAA|frameshift_variant;nc|ENSG00000253159|O60330-2|PCDHGA12	PCDHGA7|p.L604Ifs*113|1|0.17|ENSG00000253537|chr5:141384708-141384709|-/ATAGACGTGGAAATAATAGATATTAATGACAA|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	593.78295	1185.55135	-1.3316	-0.00079069	1.9067	0.0011321	0.57504	0.00034145	593.7838293812492	121.23	0.69148	121.03	120.75	121.44	-0.19718	0.08958	0.0022379	NaN	90.601	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41675			58324	9433;9425	48122	48167							-0.03400695186724079
TVLDVNDNAPE	11	Unmodified	_TVLDVNDNAPE_					0	0	0		PCDHGA7|p.L604Ifs*113|1|0.17|ENSG00000253537|chr5:141384708-141384709|-/ATAGACGTGGAAATAATAGATATTAATGACAA|frameshift_variant;nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7;ENSG00000253537|ENST00000518325|PCDHGA7;nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2;nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3;ENSG00000254245|ENST00000253812|PCDHGA3;ENSG00000081853|ENST00000394576|PCDHGA2;nc|ENSG00000253159|O60330-2|PCDHGA12;ENSG00000253159|ENST00000252085|PCDHGA12	PCDHGA7|p.L604Ifs*113|1|0.17|ENSG00000253537|chr5:141384708-141384709|-/ATAGACGTGGAAATAATAGATATTAATGACAA|frameshift_variant;nc|ENSG00000253159|O60330-2|PCDHGA12	PCDHGA7|p.L604Ifs*113|1|0.17|ENSG00000253537|chr5:141384708-141384709|-/ATAGACGTGGAAATAATAGATATTAATGACAA|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	593.78295	1185.55135	1.3602	0.00080769	-1.2456	-0.00073959	0.1147	6.8105E-05	593.7823455622357	121.96	1.1004	120.93	120.59	121.69	-1.0286	-0.012574	-0.0015055	NaN	90.601	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76584			58325	9433;9425	48122	48167							-0.03400695186724079
TVLDVNDNAPE	11	Unmodified	_TVLDVNDNAPE_					0	0	0		PCDHGA7|p.L604Ifs*113|1|0.17|ENSG00000253537|chr5:141384708-141384709|-/ATAGACGTGGAAATAATAGATATTAATGACAA|frameshift_variant;nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7;ENSG00000253537|ENST00000518325|PCDHGA7;nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2;nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3;ENSG00000254245|ENST00000253812|PCDHGA3;ENSG00000081853|ENST00000394576|PCDHGA2;nc|ENSG00000253159|O60330-2|PCDHGA12;ENSG00000253159|ENST00000252085|PCDHGA12	PCDHGA7|p.L604Ifs*113|1|0.17|ENSG00000253537|chr5:141384708-141384709|-/ATAGACGTGGAAATAATAGATATTAATGACAA|frameshift_variant;nc|ENSG00000253159|O60330-2|PCDHGA12	PCDHGA7|p.L604Ifs*113|1|0.17|ENSG00000253537|chr5:141384708-141384709|-/ATAGACGTGGAAATAATAGATATTAATGACAA|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	593.78295	1185.55135	0.51704	0.00030701	-0.24427	-0.00014505	0.27277	0.00016197	593.7828976951228	122.28	0.90185	120.91	120.65	121.56	-1.3666	-0.029975	-0.00031646	NaN	90.601	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49586			58326	9433;9425	48122	48167							-0.03400695186724079
TVLERLVSL	9	Unmodified	_TVLERLVSL_					0	0	0			REV__sp|Q6SW87|RIR1_HCMVMRibonucleoside-diphosphatereductaselargesubunit-likeproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=RIR1PE=3SV=1	REV__sp|Q6SW87|RIR1_HCMVMRibonucleoside-diphosphatereductaselargesubunit-likeproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=RIR1PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.7728881835938	2	515.318774	1028.623	-0.94285	-0.00048587	-1.3387	-0.00068986	-2.2816	-0.0011757	515.318856744059	70.124	1.0245	66.643	66.105	67.13	-3.4812					34	15	3	0	0	0	0.027446	1	5332	5332		51.193	5.2204	1	98732	+		58327	29431	48123	48168	63944	63944					0.1098288902846889
TVLGSDRI	8	Unmodified	_TVLGSDRI_					0	0	0		nc|ENSG00000114770|O15440-5|ABCC5;ENSG00000114770|ENST00000334444|ABCC5;ENST00000437205.5_1_3:183639090-183689734:-|nuORF	nc|ENSG00000114770|O15440-5|ABCC5	nc|ENSG00000114770|O15440-5|ABCC5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	430.92352294921875	2	430.745442	859.476331	0.73476	0.00031649	-1.7421	-0.0007504	-1.0073	-0.00043391	430.74458402914865	58.083	0.55387	54.738	54.495	55.049	-3.3449					24	10	3	0	0	0	0.028476	1	3790	3790		44.117	0	1	68094			58328	3040	48124	48169	63945	63945					0.04097211863370376
TVLIIAHRLS	10	Unmodified	_TVLIIAHRLS_					0	0	0		nc|ENSG00000150967|Q9NP78-7|ABCB9;nc|ENSG00000150967|Q9NP78-2|ABCB9;ENSG00000150967|ENST00000280560|ABCB9	nc|ENSG00000150967|Q9NP78-7|ABCB9	nc|ENSG00000150967|Q9NP78-7|ABCB9	MULTI-SECPEP	OvCa9_classI_Rep2	2	561.3087158203125	2	561.853316	1121.69208	0.70579	0.00039655	-1.7375	-0.00097619	-1.0317	-0.00057964	561.8522041294664	79.979	1.2503	78.284	77.767	79.017	-1.6951					54	24	4	0	0	0	0.026956	1	6679	6679		26.693	0	1	71728			58329	5525	48125	48170	63946	63946					0.13609973048028223
TVLIIAHRLS	10	Unmodified	_TVLIIAHRLS_					0	0	0		nc|ENSG00000150967|Q9NP78-7|ABCB9;nc|ENSG00000150967|Q9NP78-2|ABCB9;ENSG00000150967|ENST00000280560|ABCB9	nc|ENSG00000150967|Q9NP78-7|ABCB9	nc|ENSG00000150967|Q9NP78-7|ABCB9	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	561.853316	1121.69208	0.48362	0.00027172	-1.2428	-0.00069827	-0.75917	-0.00042654	561.8524743658252	80.935	0.73668	78.224	78.052	78.788	-2.7106	-0.041635	-0.00042051	NaN	18.262	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81391			58330	5525	48125	48170							0.13609973048028223
TVLITVNKL	9	Unmodified	_TVLITVNKL_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.7614440917969	2	500.823692	999.632832	2.5795	0.0012919	-0.077013	-3.857E-05	2.5025	0.0012533	500.82361159850257	98.92	0.67774	98.92	98.683	99.361	0					33	16	3	0	0	0	0.027411	1	10956	10956		74.255	6.7614	1	2187000	+		58331	22791	48126	48171	63947	63947					0.13300077033841262
TVLKKLDKN	9	Unmodified	_TVLKKLDKN_					0	0	0			REV__tr|A0A553SFQ5|A0A553SFQ5_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09335PE=4SV=1	REV__tr|A0A553SFQ5|A0A553SFQ5_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09335PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	530.3322143554688	2	529.832049	1057.64954	0.017891	9.4794E-06	-1.2154	-0.00064396	-1.1975	-0.00063448	529.8337061971487	131.67	1.3911	130.54	130.24	131.63	-1.1249					78	27	4	0	0	0	0.55011	1	10522	10522		37.812	0	1	122000	+		58332	29607	48127	48172	63948	63948					0.12302577919808755
TVLKWIREN	9	Unmodified	_TVLKWIREN_					0	0	0		ENSG00000229937|ENST00000506618|PRPS1L1	ENSG00000229937|ENST00000506618|PRPS1L1	ENSG00000229937|ENST00000506618|PRPS1L1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	579.9774169921875	2	579.835123	1157.65569	-1.9923	-0.0011552	-0.74728	-0.0004333	-2.7396	-0.0015885	580.3349069914265	107.1	0.52765	105.22	104.8	105.33	-1.8785					11	9	2	0	0	0	0.027462	1	9748	9748		32.812	0	1	9037.8			58333	9284	48128	48173	63949	63949					0.08317096151336045
TVLLGLMQKN	10	Unmodified	_TVLLGLMQKN_					0	0	0		ENSG00000203697|ENST00000366872|CAPN8	ENSG00000203697|ENST00000366872|CAPN8	ENSG00000203697|ENST00000366872|CAPN8	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.8200073242188	2	558.825909	1115.63727	-0.73073	-0.00040835	-2.4892	-0.001391	-3.22	-0.0017994	558.8244242973437	125.01	2.7525	123.61	123.23	125.98	-1.3908					97	54	3	0	0	0	0.55359	1	12003	12003		47.657	8.4045	1	171930			58334	8924	48129	48174	63950	63950					0.0840721818512975
TVLLLILCM	9	Unmodified	_TVLLLILCM_					0	0	0		nc|ENSG00000170088|Q8IY95-2|TMEM192;ENSG00000170088|ENST00000306480|TMEM192	nc|ENSG00000170088|Q8IY95-2|TMEM192	nc|ENSG00000170088|Q8IY95-2|TMEM192	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.7583923339844	2	509.805599	1017.59665	0.74163	0.00037809	-4.1449	-0.0021131	-3.4033	-0.001735	509.8031605545815	140.48	0.95413	138.98	138.46	139.42	-1.4952					26	18	2	0	0	0	0.027462	1	13689	13689		52.299	9.8247	1	15965			58335	7072	48130	48175	63951	63951					0.08855160541122586
TVLLMRGVLD	10	Unmodified	_TVLLMRGVLD_					0	0	0			REV__nc|ENSG00000185813|Q99447-2|PCYT2	REV__nc|ENSG00000185813|Q99447-2|PCYT2	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.8255004882812	2	558.825909	1115.63727	0.75211	0.0004203	-2.3378	-0.0013064	-1.5857	-0.00088612	558.8244580499451	116.69	1.1889	115.33	114.89	116.08	-1.3645					46	22	4	0	0	0	0.58067	1	10914	10914		44.377	1.981	1	61463	+		58336	22533	48131	48176	63952	63952					0.08407218185107013
TVLMDSLLPVL	11	Unmodified	_TVLMDSLLPVL_					0	0	0		ENSG00000103047|ENST00000261778|TANGO6	ENSG00000103047|ENST00000261778|TANGO6	ENSG00000103047|ENST00000261778|TANGO6	MULTI-SECPEP	OvCa99_classI_Rep5	1	600.3055419921875	2	600.84905	1199.68355	1.8872	0.0011339	-1.8531	-0.0011135	0.034023	2.0443E-05	600.8477953042179	129.77	0.70094	129.77	129.31	130.01	0					21	14	2	0	0	0	0.02538	1	15012	15012		37.812	0	1	108600			58337	2278	48132	48177	63953	63953					0.0916923829654479
TVLNGRTR	8	Unmodified	_TVLNGRTR_					0	0	0		ENSG00000149256|ENST00000278550|TENM4	ENSG00000149256|ENST00000278550|TENM4	ENSG00000149256|ENST00000278550|TENM4	MULTI-MSMS	OvCa99_classI_Rep5	1	458.76959228515625	2	458.769783	915.525013	-0.51775	-0.00023753	0.91329	0.00041899	0.39554	0.00018146	458.77008493524374	37.921	0.49295	37.921	37.714	38.207	0					23	10	3	0	0	0	0.4531	1	2112	2112		82.241	5.4664	1	521440			58338	5447	48133	48178	63954	63954					0.06387125223125167
TVLNSHLLA	9	Unmodified	_TVLNSHLLA_					0	0	0		ENSG00000170871|ENST00000307659|KIAA0232	ENSG00000170871|ENST00000307659|KIAA0232	ENSG00000170871|ENST00000307659|KIAA0232	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.2835998535156	2	484.282192	966.549831	-1.0933	-0.00052948	-0.092149	-4.4626E-05	-1.1855	-0.0005741	484.28193808882077	45.088	1.974	42.049	41.663	43.637	-3.0385					79	37	3	0	0	0	0.27001	1	2291	2291		66.429	0.6261	1	563070			58339	7145	48134	48179	63955	63955					0.06521760305849966
TVLQNSVVV	9	Unmodified	_TVLQNSVVV_					0	0	0			REV__ENST00000506915.1_1_4:190395906-190396341:+|nuORF	REV__ENST00000506915.1_1_4:190395906-190396341:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.783447265625	2	479.782025	957.549496	-0.28331	-0.00013593	0.21461	0.00010296	-0.068703	-3.2963E-05	479.7818994579763	48.274	1.241	45.167	44.888	46.129	-3.1077					33	23	2	0	0	0	0.11471	1	2663	2663		93.195	8.2799	1	411610	+		58340	26893	48135	48180	63956	63956					0.06902340586009359
TVLQPKKLVTE	11	Unmodified	_TVLQPKKLVTE_					0	0	0		nc|ENSG00000178997|Q8NHP7-2|EXD1;nc|ENSG00000178997|Q8NHP7|EXD1;ENSG00000178997|ENST00000458580|EXD1	nc|ENSG00000178997|Q8NHP7-2|EXD1	nc|ENSG00000178997|Q8NHP7-2|EXD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	628.3824462890625	2	628.384645	1254.75474	-1.7019	-0.0010694	-1.8744	-0.0011778	-3.5763	-0.0022473	628.3832559511075	147.74	1.901	146.3	145.18	147.08	-1.435					72	37	2	0	0	0	0.71498	1	14560	14560		24.519	0.99649	1	277210			58341	7792	48136	48181	63957	63957					0.13755074325536043
TVLQSPAIL	9	Unmodified	_TVLQSPAIL_					0	0	0		TRRAP|p.L2853Nfs*14|1|0.37|ENSG00000196367|chr7:98978847-98978848|-/AA|frameshift_variant;TRRAP|p.Q3700Cfs*14|1|0.37|ENSG00000196367|chr7:99011251-99011252|-/GTGCGTTAAATCTGTCACCAGAA|frameshift_variant;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	TRRAP|p.L2853Nfs*14|1|0.37|ENSG00000196367|chr7:98978847-98978848|-/AA|frameshift_variant	TRRAP|p.L2853Nfs*14|1|0.37|ENSG00000196367|chr7:98978847-98978848|-/AA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	471.28826904296875	2	471.286943	940.559333	0.39577	0.00018652	0.059333	2.7963E-05	0.45511	0.00021449	471.2868394335814	72.34	7.0488	72.34	69.552	76.6	0					308	176	2	0	0	0	0.13482	1	7217	7217		87.754	0	1	3030900			58342	8597	48137	48182	63958	63958					0.0866752859137705
TVLRGLTVL	9	Unmodified	_TVLRGLTVL_					0	0	0		ENST00000469163.1_1_22:45579971-45580253:+|nuORF	ENST00000469163.1_1_22:45579971-45580253:+|nuORF	ENST00000469163.1_1_22:45579971-45580253:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	486.3117980957031	2	486.316035	970.617516	1.3564	0.00065966	0.46291	0.00022512	1.8193	0.00088478	486.31616279564014	109.17	1.1524	109.17	108.89	110.04	0					60	25	4	0	0	0	0.1944	1	12379	12379		77.318	8.5308	1	1120100			58343	12342	48138	48183	63959	63959					0.13103210236658924
TVLSHRQLKDL	11	Unmodified	_TVLSHRQLKDL_					0	0	0		ENST00000395686.7_1_14:53130539-53133138:-|nuORF	ENST00000395686.7_1_14:53130539-53133138:-|nuORF	ENST00000395686.7_1_14:53130539-53133138:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	437.25653076171875	3	437.257738	1308.75138	-3.525	-0.0015413	2.7096	0.0011848	-0.81547	-0.00035657	437.25900137272055	155.13	2.0506	154.9	154.06	156.11	-0.22697					105	58	2	0	0	0	0.72488	1	15846	15846		17.167	2.4731	1	24211			58344	11295	48139	48184	63960	63960					0.10935824271541605
TVLSPISHKL	10	Unmodified	_TVLSPISHKL_					0	0	0		ENST00000509376.5_1_4:52779756-52779993:+|nuORF	ENST00000509376.5_1_4:52779756-52779993:+|nuORF	ENST00000509376.5_1_4:52779756-52779993:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	547.8258666992188	2	547.832049	1093.64954	-6.0457	-0.003312	-4.2018	-0.0023019	-10.248	-0.0056139	547.8295905768617	154.78	1.79	153.77	152.92	154.71	-1.0076					93	40	3	0	0	0	0.75313	1	13276	13276		24.519	0	1	69775			58345	12960	48140	48185	63961	63961					0.10646577919806077
TVLTIMDIKS	10	Unmodified	_TVLTIMDIKS_					0	0	0		ENST00000565642.5_1_16:71777395-71799448:-|nuORF;AP1G1|p.N739Kfs*28|1|0.05|ENSG00000166747|chr16:71738993-71738994|-/C|frameshift_variant;ENSG00000166747|ENST00000299980|AP1G1;nc|ENSG00000166747|O43747-2|AP1G1;ENST00000565009.5_1_16:71790048-71805048:-|nuORF	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	ENST00000565642.5_1_16:71777395-71799448:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.8331909179688	2	560.81775	1119.62095	-1.3604	-0.00076296	-0.1972	-0.00011059	-1.5576	-0.00087355	561.3196477735637	103.85	1.0667	103.85	103.47	104.54	0					49	24	3	0	0	0	0.026688	1	11597	11597		25.574	6.4705	1	4383300			58346	98	48141	48186	63962	63962					0.06592092228333968
TVLTKPIN	8	Unmodified	_TVLTKPIN_					0	0	0		ENST00000419821.6_1_12:118588353-118588515:-|nuORF	ENST00000419821.6_1_12:118588353-118588515:-|nuORF	ENST00000419821.6_1_12:118588353-118588515:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	443.27508544921875	2	443.273835	884.533118	1.1525	0.00051086	-4.3689	-0.0019366	-3.2165	-0.0014258	443.27180064343105	139.52	2.0991	138.02	137.22	139.32	-1.4952					91	40	3	0	0	0	0.75426	1	13685	13685		18.324	0	1	858700			58347	11658	48142	48187	63963	63963					0.08623259419880469
TVLTMTTLST	10	Unmodified	_TVLTMTTLST_					0	0	0		GABRG3|p.S452Vfs*6|1|0.11|ENSG00000182256|chr15:27532829-27532830|-/A|frameshift_variant;ENSG00000182256|ENST00000615808|GABRG3;ENSG00000163285|ENST00000295452|GABRG1;nc|ENSG00000113327|P18507-1|GABRG2;ENSG00000113327|ENST00000639213|GABRG2;nc|ENSG00000113327|P18507-3|GABRG2	GABRG3|p.S452Vfs*6|1|0.11|ENSG00000182256|chr15:27532829-27532830|-/A|frameshift_variant	GABRG3|p.S452Vfs*6|1|0.11|ENSG00000182256|chr15:27532829-27532830|-/A|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	534.2815551757812	2	534.286282	1066.55801	NaN	NaN	NaN	NaN	NaN	NaN	NaN	123.98	1	123.98	123.48	124.48	0								0	0	0	0.15062	1	14303	14303		40.778	0	1				58348	7986	48143	48188	63964	63964					0.027395264403139663
TVLYMFLF	8	Unmodified	_TVLYMFLF_					0	0	0			REV__ENSG00000183024|ENST00000328890|OR1G1	REV__ENSG00000183024|ENST00000328890|OR1G1	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.8151245117188	2	517.274989	1032.53543	-0.80361	-0.00041569	4.0987	0.0021202	3.2951	0.0017045	517.2792063338024	85.762	1.3712	84.271	83.85	85.222	-1.4906					71	26	5	0	0	0	0.028476	1	7399	7399		19.36	0	1	78689	+		58349	22335	48144	48189	63965	63965					0.020459718333313504
TVLYMFLF	8	Unmodified	_TVLYMFLF_					0	0	0			REV__ENSG00000183024|ENST00000328890|OR1G1	REV__ENSG00000183024|ENST00000328890|OR1G1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	517.274989	1032.53543	0.019606	1.0142E-05	5.6635	0.0029296	5.6831	0.0029397	517.2790968517562	86.853	1.1978	84.226	83.957	85.155	-2.6269	-0.022824	0.00076346	NaN	19.36	64	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134420	+		58350	22335	48144	48189							0.020459718333313504
TVMEQLKKS	9	Unmodified	_TVMEQLKKS_					0	0	0		ITGAM|p.D310*|1|0.05|ENSG00000169896|chr16:31275616-31275617|-/C|frameshift_variant;ITGAM|p.T819Lfs*17|1|0.13|ENSG00000169896|chr16:31325353-31325354|-/TTGGGGCTGACCCAGACTTGTGAGACCCTGA|frameshift_variant;ENSG00000169896|ENST00000544665|ITGAM;nc|ENSG00000169896|P11215-2|ITGAM	ITGAM|p.D310*|1|0.05|ENSG00000169896|chr16:31275616-31275617|-/C|frameshift_variant	ITGAM|p.D310*|1|0.05|ENSG00000169896|chr16:31275616-31275617|-/C|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.8072509765625	2	532.294442	1062.57433	0.75695	0.00040292	-4.4742	-0.0023816	-3.7172	-0.0019786	532.2921278287139	110.49	1.0474	109.34	108.72	109.76	-1.1444					41	19	3	0	0	0	0.027462	1	7915	7915		18.262	0	1	38766			58351	7050	48145	48190	63966	63966					0.04554652397064274
TVMEQLKKS	9	Unmodified	_TVMEQLKKS_					0	0	0		ITGAM|p.D310*|1|0.05|ENSG00000169896|chr16:31275616-31275617|-/C|frameshift_variant;ITGAM|p.T819Lfs*17|1|0.13|ENSG00000169896|chr16:31325353-31325354|-/TTGGGGCTGACCCAGACTTGTGAGACCCTGA|frameshift_variant;ENSG00000169896|ENST00000544665|ITGAM;nc|ENSG00000169896|P11215-2|ITGAM	ITGAM|p.D310*|1|0.05|ENSG00000169896|chr16:31275616-31275617|-/C|frameshift_variant	ITGAM|p.D310*|1|0.05|ENSG00000169896|chr16:31275616-31275617|-/C|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	532.294442	1062.57433	-0.87454	-0.00046551	-2.7063	-0.0014405	-3.5808	-0.001906	532.2929840583242	109.66	0.79214	109.49	109.17	109.96	-0.17237	0.081401	0.00088053	NaN	12.812	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36410			58352	7050	48145	48190							0.04554652397064274
TVMLTGDAAAV	11	Unmodified	_TVMLTGDAAAV_					0	0	0		tr|A0A553SIY0|A0A553SIY0_NIACICd(2+)-exportingATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	tr|A0A553SIY0|A0A553SIY0_NIACICd(2+)-exportingATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	tr|A0A553SIY0|A0A553SIY0_NIACICd(2+)-exportingATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.8058471679688	2	524.7708	1047.52705	-1.3391	-0.0007027	-1.8878	-0.00099068	-3.2269	-0.0016934	524.7690943170264	93.223	0.50058	90.716	90.362	90.863	-2.5072					23	9	4	0	0	0	0.025457	1	8112	8112		29.17	8.6882	1	32276			58353	33438	48146	48191	63967	63967					0.005183731260558488
TVMRFLNEQ	9	Unmodified	_TVMRFLNEQ_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP;DSP|p.R1308Pfs*18|1|0.56|ENSG00000096696|chr6:7580109-7580110|-/C|frameshift_variant;DSP|p.R1725Qfs*9|1|0.06|ENSG00000096696|chr6:7581363-7581364|-/A|frameshift_variant	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OvCa9_classI_Rep3	3	569.287841796875	2	569.289691	1136.56483	-0.45174	-0.00025717	-2.9184	-0.0016614	-3.3701	-0.0019186	569.2878811912792	102.99	1.3107	101.47	101.05	102.36	-1.5211					66	24	5	0	0	0	0.17606	1	7124	7124		80.455	0	1	446110			58354	1949	48147	48192	63968	63968					0.0020088411154119967
TVNDSQPEDE	10	Unmodified	_TVNDSQPEDE_					0	0	0		nc|ENSG00000005889|P17010-2|ZFX;ENSG00000005889|ENST00000304543|ZFX;nc|ENSG00000005889|P17010-3|ZFX	nc|ENSG00000005889|P17010-2|ZFX	nc|ENSG00000005889|P17010-2|ZFX	MULTI-SECPEP	OvCa9_classI_Rep2	2	566.2371215820312	2	567.23329	1132.45203	-1.9659	-0.0011151	0.90305	0.00051224	-1.0628	-0.00060287	567.233434277905	34.836	0.29772	32.126	31.959	32.257	-2.7097					9	5	2	0	0	0	0.02676	1	1360	1360		41.427	10.923	1	10370			58355	864	48148	48193	63969	63969					-0.10890137871456318
TVNEIVLKV	9	Unmodified	_TVNEIVLKV_					0	0	0		nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;ENST00000497932.5_1_9:128201168-128209649:-|nuORF;nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	507.81512451171875	2	507.813325	1013.6121	2.173	0.0011035	-0.11999	-6.0932E-05	2.053	0.0010425	507.81315166760425	95.634	1.3398	95.634	95.37	96.71	0					72	31	4	0	0	0	0.051592	1	10452	10452		117.81	10.804	1	2074300			58356	14984	48149	48194	63970	63970					0.10583486654184071
TVNEIVLKV	9	Unmodified	_TVNEIVLKV_					0	0	0		nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;ENST00000497932.5_1_9:128201168-128209649:-|nuORF;nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1	MSMS	OvCa9_classI_Rep2	2	507.8136901855469	2	507.813325	1013.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.095	1	95.067	94.567	95.567	-1.0281								0	0	0	0.028892	1	8657	8657		112.41	5.4034	1				58357	14984	48149	48194	63971	63971					0.10583486654184071
TVNEIVLKV	9	Unmodified	_TVNEIVLKV_					0	0	0		nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;ENST00000497932.5_1_9:128201168-128209649:-|nuORF;nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1	MSMS	OvCa9_classI_Rep2	2	507.8137512207031	2	507.813325	1013.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.145	1	95.117	94.617	95.617	-1.0281								0	0	0	0.028892	1	8663	8663		112.41	2.291	1				58358	14984	48149	48194	63972	63972					0.10583486654184071
TVNEIVLKV	9	Unmodified	_TVNEIVLKV_					0	0	0		nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;ENST00000497932.5_1_9:128201168-128209649:-|nuORF;nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1	MSMS	OvCa9_classI_Rep2	2	507.8137512207031	2	507.813325	1013.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.195	1	95.166	94.666	95.666	-1.0281								0	0	0	0.0096097	1	8669	8669		141.52	10.489	1				58359	14984	48149	48194	63973	63973					0.10583486654184071
TVNEIVLKV	9	Unmodified	_TVNEIVLKV_					0	0	0		nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;ENST00000497932.5_1_9:128201168-128209649:-|nuORF;nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1	MSMS	OvCa9_classI_Rep2	2	507.81390380859375	2	507.813325	1013.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.244	1	95.216	94.716	95.716	-1.0281								0	0	0	0.0046572	1	8675	8675		148.99	10.161	1				58360	14984	48149	48194	63974	63974					0.10583486654184071
TVNEIVLKV	9	Unmodified	_TVNEIVLKV_					0	0	0		nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;ENST00000497932.5_1_9:128201168-128209649:-|nuORF;nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1	MSMS	OvCa9_classI_Rep2	2	507.8125915527344	2	507.813325	1013.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.287	1	95.259	94.759	95.759	-1.0281								0	0	0	0.0096097	1	8680	8680		141.52	5.2523	1				58361	14984	48149	48194	63975	63975					0.10583486654184071
TVNEIVLKV	9	Unmodified	_TVNEIVLKV_					0	0	0		nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;ENST00000497932.5_1_9:128201168-128209649:-|nuORF;nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1	MSMS	OvCa9_classI_Rep2	2	507.8133239746094	2	507.813325	1013.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.336	1	95.308	94.808	95.808	-1.0281								0	0	0	0.022759	1	8686	8686		129.42	16.01	1				58362	14984	48149	48194	63976	63976					0.10583486654184071
TVNEIVLKV	9	Unmodified	_TVNEIVLKV_					0	0	0		nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;ENST00000497932.5_1_9:128201168-128209649:-|nuORF;nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1	MSMS	OvCa9_classI_Rep2	2	507.8127746582031	2	507.813325	1013.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	96.379	1	95.351	94.851	95.851	-1.0281								0	0	0	0.022759	1	8691	8691		129.42	10.678	1				58363	14984	48149	48194	63977	63977					0.10583486654184071
TVNEIVLKV	9	Unmodified	_TVNEIVLKV_					0	0	0		nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;ENST00000497932.5_1_9:128201168-128209649:-|nuORF;nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1	MSMS	OvCa9_classI_Rep4_	4	507.81427001953125	2	507.813325	1013.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.447	1	95.069	94.569	95.569	-2.3786								0	0	0	0.022759	1	8632	8632		129.42	10.678	1				58364	14984	48149	48194	63978	63978					0.10583486654184071
TVNEIVLKV	9	Unmodified	_TVNEIVLKV_					0	0	0		nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1;ENST00000497932.5_1_9:128201168-128209649:-|nuORF;nc|ENSG00000119487|Q9BPZ7-4|MAPKAP1;nc|ENSG00000119487|Q9BPZ7-2|MAPKAP1;ENSG00000119487|ENST00000265960|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1	nc|ENSG00000119487|Q9BPZ7-3|MAPKAP1	MSMS	OvCa9_classI_Rep4_	4	507.81494140625	2	507.813325	1013.6121	NaN	NaN	NaN	NaN	NaN	NaN	NaN	97.542	1	95.163	94.663	95.663	-2.3786								0	0	0	0.0055026	1	8643	8643		146.79	14.028	1				58365	14984	48149	48194	63979	63979					0.10583486654184071
TVNFAHQFM	9	Unmodified	_TVNFAHQFM_					0	0	0			REV__tr|A0A553STZ4|A0A553STZ4_NIACIAscorbate-specificPTSsystemEIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_06025PE=3SV=1	REV__tr|A0A553STZ4|A0A553STZ4_NIACIAscorbate-specificPTSsystemEIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_06025PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.7637329101562	2	547.758027	1093.5015	-0.93925	-0.00051448	-1.3238	-0.00072514	-2.2631	-0.0012396	548.2595451027962	69.415	0.44075	65.934	65.713	66.153	-3.4812					17	8	3	0	0	0	0.027462	1	5211	5211		29.15	3.5755	1	27479	+		58366	31027	48150	48195	63980	63980					-0.04151056605701342
TVNGNTHI	8	Unmodified	_TVNGNTHI_					0	0	0			REV__ENST00000496333.5_1_2:24715001-24866843:+|nuORF	REV__ENST00000496333.5_1_2:24715001-24866843:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	428.2225341796875	2	428.219591	854.42463	2.5279	0.0010825	4.2074	0.0018017	6.7353	0.0028842	428.22120097602317	113.22	0.5267	113.22	112.97	113.5	0					22	12	3	0	0	0	0.60331	1	12902	12902		63.306	0	1	289810	+		58367	26758	48151	48196	63981	63981					-0.008405318305221954
TVNIRKLV	8	Unmodified	_TVNIRKLV_					0	0	0			REV__sp|F5HET4|U131A_HCMVMProteinUL131AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL131APE=1SV=1	REV__sp|F5HET4|U131A_HCMVMProteinUL131AOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL131APE=1SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.7913818359375	2	471.808377	941.6022	2.7104	0.0012788	-3.8009	-0.0017933	-1.0905	-0.00051449	471.80573239275384	75.378	0.1926	75.378	75.251	75.444	0					6	4	2	0	0	0	0.028476	1	7492	7492		73.975	5.49	1	72661	+		58368	29409	48152	48197	63982	63982					0.12906343439465218
TVNLKPVEP	9	Unmodified	_TVNLKPVEP_					0	0	0			REV__nc|ENSG00000139163|Q9HBU6|ETNK1;REV__ETNK1-MYO9B|1|fusion	REV__ETNK1-MYO9B|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	498.7894592285156	2	498.78985	995.565146	-0.69611	-0.00034721	0.14781	7.3725E-05	-0.5483	-0.00027349	498.7898766980179	115.24	3.0674	115.12	114.7	117.77	-0.11777					207	61	7	0	0	0	0.44568	1	11055	11055		47.657	1.7054	1	2910400	+		58369	19592;28120	48153	48198	63983	63983					0.06718627103043673
TVNNVAQEP	9	Unmodified	_TVNNVAQEP_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.8074035644531	2	486.243264	970.471974	0.24949	0.00012131	3.4068	0.0016565	3.6563	0.0017779	486.2447602602634	56.78	0.66098	53.435	53.12	53.781	-3.3449					24	12	2	0	0	0	0.027462	1	3691	3691		42.396	9.5837	1	214700			58370	3261	48154	48199	63984	63984					-0.014442973502013956
TVNQLLLLF	9	Unmodified	_TVNQLLLLF_					0	0	0			REV__ENST00000378654.8_1_13:48517190-48517361:-|nuORF	REV__ENST00000378654.8_1_13:48517190-48517361:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	531.8069458007812	2	530.823692	1059.63283	0.24467	0.00012987	-0.62623	-0.00033242	-0.38157	-0.00020254	530.8231900501141	79.258	1.5999	76.918	76.514	78.114	-2.3399					45	28	2	0	0	0	0.027462	1	4220	4220		37.159	0	1	182240	+		58371	25147	48155	48200	63985	63985					0.10540077033851958
TVNQLLLLF	9	Unmodified	_TVNQLLLLF_					0	0	0			REV__ENST00000378654.8_1_13:48517190-48517361:-|nuORF	REV__ENST00000378654.8_1_13:48517190-48517361:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.8090209960938	2	530.823692	1059.63283	-1.4296	-0.00075885	0.92778	0.00049249	-0.50178	-0.00026636	530.8239832919932	79.81	1.1149	77.058	76.75	77.865	-2.7514					49	22	3	0	0	0	0.027462	1	6463	6463		29.15	0	1	193220	+		58372	25147	48155	48200	63986	63986					0.10540077033851958
TVNRMYSV	8	Unmodified	_TVNRMYSV_					0	0	0		ENST00000370996.4_1_20:58513543-58513669:-|nuORF	ENST00000370996.4_1_20:58513543-58513669:-|nuORF	ENST00000370996.4_1_20:58513543-58513669:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.2442932128906	2	485.244752	968.474951	-0.6606	-0.00032055	1.7364	0.00084259	1.0758	0.00052203	485.24516246825533	124.08	0.96581	122.69	122.47	123.44	-1.3908					54	18	4	0	0	0	0.61436	2	11756	11756;11767		60.972	3.5405	1	142580			58373	10945	48156	48201	63987;63988	63987					-0.01054745497026488
TVNSKALEI	9	Unmodified	_TVNSKALEI_					0	0	0		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	MULTI-MSMS	OvCa99_classI_Rep5	1	487.7802429199219	2	487.779482	973.544411	-0.86048	-0.00041972	0.73948	0.0003607	-0.121	-5.9021E-05	487.77969904866114	70.239	1.3074	70.239	69.883	71.191	0					72	32	4	0	0	0	0.059253	1	6720	6720		113.41	11.811	1	2637600			58374	6212	48157	48202	63989	63989					0.05658036723355053
TVNSKALEI	9	Unmodified	_TVNSKALEI_					0	0	0		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	MULTI-MSMS	OvCa9_classI_Rep2	2	487.780029296875	2	487.779482	973.544411	0.35943	0.00017532	-0.67277	-0.00032816	-0.31334	-0.00015284	487.7790893506055	72.418	3.8643	69.911	69.068	72.933	-2.5071					171	73	5	0	0	0	0.043101	6	5881	5857;5862;5868;5875;5881;5893		124.08	21.81	1	863710			58375	6212	48157	48202	63990;63991;63992;63993;63994;63995	63994					0.05658036723355053
TVNSKALEI	9	Unmodified	_TVNSKALEI_					0	0	0		ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	ENSG00000162654|ENST00000355754|GBP4	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.780029296875	2	487.779482	973.544411	-0.66134	-0.00032259	-0.2251	-0.0001098	-0.88644	-0.00043239	487.7793241016113	73.463	3.7347	70.067	69.64	73.374	-3.3961					176	77	5	0	0	0	0.033166	7	5714	5678;5689;5702;5714;5726;5738;5777		132.76	32.452	1	2547300			58376	6212	48157	48202	63996;63997;63998;63999;64000;64001;64002	63999					0.05658036723355053
TVNVPFHL	8	Unmodified	_TVNVPFHL_					0	0	0		ENSG00000118873|ENST00000358951|RAB3GAP2	ENSG00000118873|ENST00000358951|RAB3GAP2	ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	462.7987365722656	2	463.758352	925.502152	1.6325	0.0007571	0.39791	0.00018454	2.0305	0.00094164	463.7585930493245	92.292	0.50654	92.292	92.008	92.515	0					18	11	2	0	0	0	0.028476	1	9997	9997		54.765	15.959	1	302090			58377	3328	48158	48203	64003	64003					0.03642106105644416
TVPELARNV	9	Unmodified	_TVPELARNV_					0	0	0		nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;DNAH10|p.N3904Vfs*37|1|0.07|ENSG00000197653|chr12:123926777-123926778|-/GGTACAGAGAAGTCCCTGCC|frameshift_variant;DNAH10|p.R2161Nfs*35|1|0.03|ENSG00000197653|chr12:123861095-123861096|-/TAACAGTGAAGGGAAG|frameshift_variant;nc|ENSG00000197653|Q8IVF4-2|DNAH10;DNAH10|p.I1041Lfs*26|1|0.09|ENSG00000197653|chr12:123813493-123813493|A/-|frameshift_variant;ENST00000467219.5_1_12:124265674-124298205:+|nuORF	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.7860412597656	2	499.785099	997.555644	-1.634	-0.00081666	2.4314	0.0012152	0.79743	0.00039854	499.78663317143213	118.74	1.2488	117.39	117.05	118.3	-1.3444					44	23	4	0	0	0	0.37135	1	11158	11158		54.776	21.964	1	240830			58378	8733	48159	48204	64004	64004					0.05676858817514585
TVPFRWNH	8	Unmodified	_TVPFRWNH_					0	0	0		ENST00000393249.6_1_12:76746490-76746664:-|nuORF	ENST00000393249.6_1_12:76746490-76746664:-|nuORF	ENST00000393249.6_1_12:76746490-76746664:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.2811889648438	2	528.772326	1055.5301	-0.37812	-0.00019994	-2.1182	-0.0011201	-2.4964	-0.00132	528.7708992182611	108.44	0.89114	108.22	107.73	108.62	-0.22498					26	17	2	0	0	0	0.028476	1	10195	10195		33.516	10.473	1	19403			58379	11242	48160	48205	64005	64005					0.004554290857640808
TVPFRWNH	8	Unmodified	_TVPFRWNH_					0	0	0		ENST00000393249.6_1_12:76746490-76746664:-|nuORF	ENST00000393249.6_1_12:76746490-76746664:-|nuORF	ENST00000393249.6_1_12:76746490-76746664:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	528.772326	1055.5301	-0.35877	-0.00018971	-2.4972	-0.0013205	-2.856	-0.0015102	528.7709287162237	109.19	0.6841	108	107.67	108.35	-1.1978	-0.056119	7.3486E-05	NaN	33.516	20	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35428			58380	11242	48160	48205							0.004554290857640808
TVPFRWNH	8	Unmodified	_TVPFRWNH_					0	0	0		ENST00000393249.6_1_12:76746490-76746664:-|nuORF	ENST00000393249.6_1_12:76746490-76746664:-|nuORF	ENST00000393249.6_1_12:76746490-76746664:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	528.772326	1055.5301	-0.59231	-0.0003132	-3.4685	-0.001834	-4.0608	-0.0021472	528.7703896132625	109.65	0.7381	107.94	107.65	108.38	-1.7068	-0.10913	-0.00095366	NaN	33.516	22	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20221			58381	11242	48160	48205							0.004554290857640808
TVPIQLQEP	9	Unmodified	_TVPIQLQEP_					0	0	0			REV__nc|ENSG00000143751|Q6IQ49-3|SDE2	REV__nc|ENSG00000143751|Q6IQ49-3|SDE2	MULTI-SECPEP	OvCa9_classI_Rep2	2	512.8138427734375	2	512.787307	1023.56006	-0.54483	-0.00027938	2.7553	0.0014129	2.2104	0.0011335	513.2907515144556	64.167	1.1069	61.442	60.81	61.917	-2.7245					28	20	2	0	0	0	0.027461	1	4819	4819		49.442	8.8689	1	19819	+		58382	19864	48161	48206	64006	64006					0.0492232324043016
TVPKPAIP	8	Unmodified	_TVPKPAIP_					0	0	0			REV__ENSG00000082438|ENST00000652658|COBLL1	REV__ENSG00000082438|ENST00000652658|COBLL1	MULTI-MSMS	OvCa99_classI_Rep5	1	411.7593078613281	2	411.757821	821.501089	2.1793	0.00089733	0.39798	0.00016387	2.5772	0.0010612	411.7577520903636	145.54	0.70364	145.54	145.27	145.98	0					23	14	2	0	0	0	0.7224	1	17003	17003		38.806	1.7777	1	48806	+		58383	17086	48162	48207	64007	64007					0.0831989173675538
TVPMELLK	8	Unmodified	_TVPMELLK_					0	0	0		ENSG00000175029|ENST00000309035|CTBP2	ENSG00000175029|ENST00000309035|CTBP2	ENSG00000175029|ENST00000309035|CTBP2	MULTI-SECPEP	OvCa9_classI_Rep3	3	465.2862243652344	2	465.770071	929.52559	1.3831	0.00064421	2.7029	0.0012589	4.086	0.0019031	465.7709065490522	126.03	0.31071	124.95	124.76	125.07	-1.0715					6	5	2	0	0	0	0.028476	1	9832	9832		66.429	0	1	9240.5			58384	7507	48163	48208	64008	64008					0.058007838279763746
TVPNHYTL	8	Unmodified	_TVPNHYTL_					0	0	0		HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|102|2|sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|102|2|sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|102|2|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	473.28338623046875	2	472.745442	943.476331	-0.38411	-0.00018159	0.17629	8.3341E-05	-0.20782	-9.8245E-05	472.7453627429762	86.318	1.3378	84.827	84.444	85.781	-1.4906					53	25	3	0	0	0	0.028476	1	7540	7540		30.504	0	1	118120			58385	14395	48164	48209	64009	64009					0.0023321186339444466
TVPSPQQVL	9	Unmodified	_TVPSPQQVL_					0	0	0		nc|ENSG00000122778|Q9HCM3-2|KIAA1549;ENSG00000122778|ENST00000422774|KIAA1549;KIAA1549|p.G773Rfs*3|1|0.06|ENSG00000122778|chr7:138917309-138917310|-/G|frameshift_variant	nc|ENSG00000122778|Q9HCM3-2|KIAA1549	nc|ENSG00000122778|Q9HCM3-2|KIAA1549	MULTI-MSMS	OvCa99_classI_Rep5	1	484.77587890625	2	484.7742	967.533846	0.70962	0.00034401	1.1057	0.00053603	1.8154	0.00088004	484.7746131407354	152.11	0.81026	152.11	151.74	152.55	0					44	17	4	0	0	0	0.44568	1	17840	17840		47.657	5.2612	1	585070			58386	3557	48165	48210	64010	64010					0.04878054068944948
TVPTVCCLRGL	11	Unmodified	_TVPTVCCLRGL_					0	0	0		ENST00000521369.2_1_8:107284567-107284666:+|nuORF	ENST00000521369.2_1_8:107284567-107284666:+|nuORF	ENST00000521369.2_1_8:107284567-107284666:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	580.83154296875	2	581.309569	1160.60458	-1.0434	-0.00060651	3.3294	0.0019354	2.2861	0.0013289	581.3109950555454	77.124	1.1044	74.307	73.673	74.777	-2.8165					35	22	2	0	0	0	0.02557	1	6152	6152		39.253	0	1	27528			58387	13120	48166	48211	64011	64011					0.030706877906141017
TVPTVSPEVP	10	Unmodified	_TVPTVSPEVP_					0	0	0		ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.6240844726562	2	513.279315	1024.54408	-1.1712	-0.00060114	-4.4238	-0.0022707	-5.595	-0.0028718	513.2769816900911	66.22	0.72871	62.729	62.223	62.951	-3.4902					24	14	2	0	0	0	0.026849	1	4790	4790		32.812	4.9302	1	56939			58388	7920	48167	48212	64012	64012					0.032786170035251416
TVPTVSPEVP	10	Unmodified	_TVPTVSPEVP_					0	0	0		ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-MATCH	OvCa9_classI_Rep3	3		2	513.279315	1024.54408	1.3754	0.00070597	-7.4602	-0.0038292	-6.0848	-0.0031232	513.2748915071984	65.779	0.40659	62.833	62.655	63.061	-2.9459	0.10867	-0.0016687	NaN	32.812	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6706.5			58389	7920	48167	48212							0.032786170035251416
TVPWNIILLLG	11	Unmodified	_TVPWNIILLLG_					0	0	0		nc|ENSG00000158296|Q8WWT9-3|SLC13A3;nc|ENSG00000158296|Q8WWT9-6|SLC13A3;ENSG00000158296|ENST00000279027|SLC13A3;nc|ENSG00000158296|Q8WWT9-5|SLC13A3	nc|ENSG00000158296|Q8WWT9-3|SLC13A3	nc|ENSG00000158296|Q8WWT9-3|SLC13A3	MULTI-MSMS	OvCa9_classI_Rep3	3	413.58807373046875	3	413.588425	1237.74344	1.5895	0.00065738	-3.7084	-0.0015338	-2.119	-0.00087638	413.5867931980936	68.355	2.099	65.541	64.862	66.961	-2.8144					118	41	5	0	0	0	0.72502	1	2990	2990		15.333	1.2471	1	366370			58390	5944	48168	48213	64013	64013					0.13408297022101578
TVQFKKTLV	9	Unmodified	_TVQFKKTLV_					0	0	0			REV__ENSG00000177294|ENST00000321535|FBXO39	REV__ENSG00000177294|ENST00000321535|FBXO39	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.31884765625	2	532.329142	1062.64373	-2.2502	-0.0011979	0.44559	0.0002372	-1.8046	-0.00096066	532.3286551267186	72.527	0.63245	69.131	68.862	69.495	-3.3961					17	12	2	0	0	0	0.027353	1	5552	5552		71.877	8.5712	1	19471	+		58391	21995	48169	48214	64014	64014					0.11491479408141458
TVQFKKTLV	9	Unmodified	_TVQFKKTLV_					0	0	0			REV__ENSG00000177294|ENST00000321535|FBXO39	REV__ENSG00000177294|ENST00000321535|FBXO39	MULTI-MATCH	OvCa9_classI_Rep2	2		2	532.329142	1062.64373	-0.38296	-0.00020386	0.40569	0.00021596	0.02273	1.21E-05	532.3292198450303	71.301	0.58043	68.794	68.594	69.174	-2.5072	-0.16876	-7.9142E-06	NaN	71.877	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38887	+		58392	21995	48169	48214							0.11491479408141458
TVQGVREV	8	Unmodified	_TVQGVREV_					0	0	0			REV__tr|A0A7D6ZPG0|A0A7D6ZPG0_9CLOTPhagetailsheathsubtilisin-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20120PE=3SV=1	REV__tr|A0A7D6ZPG0|A0A7D6ZPG0_9CLOTPhagetailsheathsubtilisin-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20120PE=3SV=1	MSMS	OvCa9_classI_Rep4_	4	444.25140380859375	2	444.250892	886.48723	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.529	1	62.044	61.544	62.544	-3.4854								0	0	0	0.30129	1	4720	4720		82.305	0.064519	1		+		58393	32135	48170	48215	64015	64015					0.03944614237661881
TVQNKKPV	8	Unmodified	_TVQNKKPV_					0	0	0		ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	ENSG00000196455|ENST00000356763|PIK3R4	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.7355651855469	2	457.276909	912.539266	0.57592	0.00026336	-1.1928	-0.00054542	-0.61683	-0.00028206	457.276074021975	63.205	0.39662	63.205	63.058	63.455	0					15	9	3	0	0	0	0.028476	1	5695	5695		38.806	4.6336	1	218340			58394	8611	48171	48216	64016	64016					0.07949777651424483
TVQNQPAKL	9	Unmodified	_TVQNQPAKL_					0	0	0			REV__nc|ENSG00000053747|Q16787-3|LAMA3	REV__nc|ENSG00000053747|Q16787-3|LAMA3	MULTI-MSMS	OvCa99_classI_Rep5	1	499.78729248046875	2	499.785099	997.555644	2.9362	0.0014674	3.5975	0.001798	6.5337	0.0032654	499.78665326414665	89.768	0.62519	89.768	89.476	90.101	0					30	14	3	0	0	0	0.38969	1	9595	9595		52.937	1.6012	1	919580	+		58395	16695	48172	48217	64017	64017					0.056768588175032164
TVQQFHLND	9	Unmodified	_TVQQFHLND_					0	0	0		ENSG00000134007|ENST00000256389|ADAM20	ENSG00000134007|ENST00000256389|ADAM20	ENSG00000134007|ENST00000256389|ADAM20	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.8350830078125	2	551.269813	1100.52507	-0.41597	-0.00022931	-1.1616	-0.00064034	-1.5775	-0.00086965	551.2678020778649	101.79	0.3588	99.528	99.354	99.712	-2.2665					10	6	2	0	0	0	0.027441	1	9171	9171		40.778	0	1	9762.8			58396	4250	48173	48218	64018	64018					-0.021169195675156516
TVQRRVQPKV	10	Unmodified	_TVQRRVQPKV_					0	0	0		ENSG00000196126|ENST00000360004|HLA-DRB1	ENSG00000196126|ENST00000360004|HLA-DRB1	ENSG00000196126|ENST00000360004|HLA-DRB1	MULTI-MSMS	OvCa9_classI_Rep2	2	605.8714599609375	2	605.872571	1209.73059	-4.9831	-0.0030191	3.9659	0.0024028	-1.0172	-0.00061628	605.874829866227	157.02	0.88571	156.79	156.54	157.42	-0.22696					68	24	4	0	0	0	0.74374	1	15985	15985		25.574	2.5316	1	101120			58397	8566	48174	48219	64019	64019					0.13411278682542616
TVRFRSRYTVF	11	Unmodified	_TVRFRSRYTVF_					0	0	0		ENST00000574285.2_1_16:9197148-9197238:+|nuORF	ENST00000574285.2_1_16:9197148-9197238:+|nuORF	ENST00000574285.2_1_16:9197148-9197238:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	477.9348449707031	3	477.933366	1430.77827	1.0304	0.00049248	2.6341	0.0012589	3.6645	0.0017514	477.9346027351994	70.553	2.1532	67.834	67.549	69.702	-2.7196					131	42	5	0	0	0	0.68709	4	3235	3218;3222;3235;3267		34.087	5.5098	1	1423100			58398	13931	48175	48220	64020;64021;64022;64023	64022					0.08010932882734778
TVRFRSRYTVF	11	Unmodified	_TVRFRSRYTVF_					0	0	0		ENST00000574285.2_1_16:9197148-9197238:+|nuORF	ENST00000574285.2_1_16:9197148-9197238:+|nuORF	ENST00000574285.2_1_16:9197148-9197238:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.9363098144531	3	477.933366	1430.77827	-0.69786	-0.00033353	4.1315	0.0019746	3.4337	0.0016411	477.935332489649	71.492	1.7083	68.035	67.677	69.386	-3.4563					108	34	5	0	0	0	0.71569	1	5462	5462		24.276	7.1092	1	918710			58399	13931	48175	48220	64024	64024					0.08010932882734778
TVRHEFYP	8	Unmodified	_TVRHEFYP_					0	0	0			REV__nc|ENSG00000134765|Q08554-2|DSC1	REV__nc|ENSG00000134765|Q08554-2|DSC1	MULTI-MSMS	OvCa9_classI_Rep2	2	524.766357421875	2	524.764166	1047.51378	1.2156	0.00063789	1.8477	0.0009696	3.0633	0.0016075	524.7650401246628	128.53	2.025	128.31	127.54	129.56	-0.22697					74	40	3	0	0	0	0.67872	1	12625	12625		47.657	1.7054	1	156760	+		58400	19231	48176	48221	64025	64025					-0.008076968710156507
TVRKYFPE	8	Unmodified	_TVRKYFPE_					0	0	0		CON__ENSEMBL:ENSBTAP00000024146;ENSG00000175899|ENST00000318602|A2M	CON__ENSEMBL:ENSBTAP00000024146;ENSG00000175899|ENST00000318602|A2M	ENSG00000175899|ENST00000318602|A2M	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.8092651367188	2	520.282192	1038.54983	-0.35382	-0.00018409	3.0937	0.0016096	2.7398	0.0014255	520.2834675229681	117.9	0.64281	116.86	116.54	117.18	-1.0324					26	12	3	0	0	0	0.028476	1	8909	8909		42.396	18.193	1	111810		+	58401	606;7570	48177	48222	64026	64026					0.03209760305844611
TVRLIHVPY	9	Unmodified	_TVRLIHVPY_					0	0	0		ENST00000306999.6_1_7:16639609-16639795:-|nuORF	ENST00000306999.6_1_7:16639609-16639795:-|nuORF	ENST00000306999.6_1_7:16639609-16639795:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	550.2808837890625	2	549.326934	1096.63931	-1.0068	-0.00055306	-0.058074	-3.1902E-05	-1.0649	-0.00058497	549.8291323036082	95.06	0.29633	93.164	92.964	93.261	-1.8956					7	5	2	0	0	0	0.027462	1	6182	6182		47.916	12.297	1	11752			58402	10249	48178	48223	64027	64027					0.09486014985213842
TVRLNKLN	8	Unmodified	_TVRLNKLN_					0	0	0			REV__ENSG00000174306|ENST00000683867|ZHX3	REV__ENSG00000174306|ENST00000683867|ZHX3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.78887939453125	2	479.295633	956.576714	-0.16728	-8.0178E-05	2.4798	0.0011886	2.3126	0.0011084	479.2966628651634	79.288	1.3481	76.536	76.227	77.575	-2.7514					69	27	3	0	0	0	0.028476	1	6393	6393		40.573	0	1	253590	+		58403	21824	48179	48224	64028	64028					0.0966886891702643
TVRLQMIVL	9	Unmodified	_TVRLQMIVL_					0	0	0		ENST00000526991.2_1_18:11852584-11852803:+|nuORF	ENST00000526991.2_1_18:11852584-11852803:+|nuORF	ENST00000526991.2_1_18:11852584-11852803:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.8289794921875	2	536.830995	1071.64744	-2.2741	-0.0012208	-0.90076	-0.00048356	-3.1749	-0.0017044	536.830328046513	124.92	2.2203	123.53	122.97	125.19	-1.3908					87	42	4	0	0	0	0.3076	1	11913	11913		62.107	5.3864	1	342970			58404	13225	48180	48225	64029	64029					0.11447825910317988
TVRNGGLI	8	Unmodified	_TVRNGGLI_					0	0	0		nc|ENSG00000137731|P54710-2|FXYD2;ENSG00000137731|ENST00000292079|FXYD2;ENST00000534383.5_1_11:117691389-117694973:-|nuORF;ENST00000317594.6_1_11:117693022-117695420:-|nuORF	nc|ENSG00000137731|P54710-2|FXYD2	nc|ENSG00000137731|P54710-2|FXYD2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	415.5887145996094	2	415.248152	828.481751	-0.0092899	-3.8576E-06	-1.5058	-0.00062526	-1.515	-0.00062912	415.24736280557846	58.269	0.74974	54.924	54.748	55.498	-3.3449					25	14	2	0	0	0	0.028476	1	3857	3857		42.474	0	1	78465			58405	4609	48181	48226	64030	64030					0.06064935445863284
TVRRPPPK	8	Unmodified	_TVRRPPPK_					0	0	0			REV__ENST00000472174.6_1_1:44440432-44440534:+|nuORF	REV__ENST00000472174.6_1_1:44440432-44440534:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	476.2841796875	2	475.798343	949.582134	-0.60724	-0.00028892	-0.094762	-4.5087E-05	-0.702	-0.00033401	475.7985892402764	58.468	0.90106	55.688	55.184	56.086	-2.7801					23	17	2	0	0	0	0.028476	1	4207	4207		38.806	0	1	17750	+		58406	26305	48182	48227	64031	64031					0.10532592499509974
TVRSNLLPP	9	Unmodified	_TVRSNLLPP_					0	0	0		ENSG00000206190|ENST00000555815|ATP10A;nc|ENSG00000206190|O60312-2|ATP10A	ENSG00000206190|ENST00000555815|ATP10A	ENSG00000206190|ENST00000555815|ATP10A	MULTI-SECPEP	OvCa9_classI_Rep2	2	497.8286437988281	2	498.795466	995.57638	1.549	0.00077264	-1.6231	-0.00080959	-0.074067	-3.6944E-05	498.7941410021955	89.232	0.49458	87.864	87.576	88.071	-1.3676					16	9	2	0	0	0	0.027462	1	7855	7855		6.3127	0	1	18459			58407	9096	48183	48228	64032	64032					0.07841449197189831
TVRVFTFSV	9	Unmodified	_TVRVFTFSV_					0	0	0		nc|ENSG00000007402|Q9NY47-4|CACNA2D2;ENSG00000007402|ENST00000424201|CACNA2D2;nc|ENSG00000007402|Q9NY47-3|CACNA2D2;nc|ENSG00000007402|Q9NY47|CACNA2D2;nc|ENSG00000007402|Q9NY47-5|CACNA2D2;chr3:50364976-50365075|350|17.85|0.52|5.09|-|ENST00000423994|CACNA2D2,CACNA2D2	nc|ENSG00000007402|Q9NY47-4|CACNA2D2	nc|ENSG00000007402|Q9NY47-4|CACNA2D2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.3058471679688	2	528.297842	1054.58113	-5.9027	-0.0031184	-2.7451	-0.0014502	-8.6478	-0.0045686	528.2966039671855	156.94	0.76816	155.39	154.82	155.59	-1.545					26	22	2	0	0	0	0.027462	1	15512	15512		16.473	4.2663	1	14356			58408	487	48184	48229	64033	64033					0.05602333339948018
TVRVSVVANT	10	Unmodified	_TVRVSVVANT_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3034057617188	2	523.303655	1044.59276	-0.69596	-0.0003642	0.54848	0.00028702	-0.14748	-7.7179E-05	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.74374	1	13947	13947		25.574	1.3713	1	130240			58409	6293	48185	48230	64034	64034					0.07224530363282611
TVSEVTKLL	9	Unmodified	_TVSEVTKLL_					0	0	0		ENSG00000149633|ENST00000279024|KIAA1755	ENSG00000149633|ENST00000279024|KIAA1755	ENSG00000149633|ENST00000279024|KIAA1755	MULTI-MSMS	OvCa9_classI_Rep2	2	495.2974548339844	2	495.297507	988.580462	1.9287	0.00095527	-2.4176	-0.0011974	-0.48887	-0.00024214	495.29619133273764	88.345	1.7759	86.977	86.641	88.417	-1.3676					106	35	4	0	0	0	0.041116	1	7756	7756		125.81	1.7339	1	1318600			58410	5481	48186	48231	64035	64035					0.08571493900228688
TVSFHPLLP	9	Unmodified	_TVSFHPLLP_					0	0	0			REV__ENSG00000187676|ENST00000343307|B3GLCT	REV__ENSG00000187676|ENST00000343307|B3GLCT	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.79644775390625	2	505.78711	1009.55967	0.09541	4.8257E-05	-3.3328	-0.0016857	-3.2374	-0.0016374	505.78508564377694	52.644	0.43872	52.644	52.434	52.873	0					13	9	2	0	0	0	0.027408	1	4139	4139		57.811	15.415	1	151140	+		58411	22653	48187	48232	64036	64036					0.055269483112283524
TVSIFSLVL	9	Unmodified	_TVSIFSLVL_					0	0	0		ENSG00000164128|ENST00000296533|NPY1R	ENSG00000164128|ENST00000296533|NPY1R	ENSG00000164128|ENST00000296533|NPY1R	MULTI-MSMS	OvCa99_classI_Rep5	1	489.80035400390625	2	489.797143	977.579734	0.35762	0.00017516	4.1576	0.0020364	4.5152	0.0022115	489.79900077673824	160.64	3.1469	160.64	159.38	162.53	0					149	62	3	0	0	0	0.53957	1	18823	18823		38.806	0	1	288360			58412	6418	48188	48233	64037	64037					0.09004699251181592
TVSIGFFIL	9	Unmodified	_TVSIGFFIL_					0	0	0			REV__tr|A0A7D6W168|A0A7D6W168_9CLOTFtsW/RodA/SpoVEfamilycellcycleproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02600PE=4SV=1	REV__tr|A0A7D6W168|A0A7D6W168_9CLOTFtsW/RodA/SpoVEfamilycellcycleproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02600PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.7893981933594	2	498.791861	995.569169	-0.82368	-0.00041084	-3.8314	-0.0019111	-4.6551	-0.0023219	498.78992392916325	116.11	3.0188	115.07	114.6	117.62	-1.0414					179	60	5	0	0	0	0.17908	1	8692	8692		79.939	3.0926	1	2745900	+		58413	31878	48189	48234	64038	64038					0.07120716596762122
TVSINRSPVT	10	Unmodified	_TVSINRSPVT_					0	0	0			REV__ENSG00000085465|ENST00000369732|OVGP1	REV__ENSG00000085465|ENST00000369732|OVGP1	MULTI-MSMS	OvCa99_classI_Rep5	1	537.302490234375	2	537.301113	1072.58767	-0.91674	-0.00049257	0.44953	0.00024153	-0.46722	-0.00025104	537.3012577419084	27.966	0.34943	27.966	27.791	28.14	0					16	6	3	0	0	0	0.67987	1	876	876		32.751	1.2207	1	227810	+		58414	17134	48190	48235	64039	64039					0.054282265006804664
TVSISVIKNP	10	Unmodified	_TVSISVIKNP_					0	0	0		ZBTB37|p.V222Gfs*19|1|0.08|ENSG00000185278|chr1:173870889-173870890|-/GAGCAAACAAAAAAGGCGC|frameshift_variant;nc|ENSG00000185278|Q5TC79-3|ZBTB37;nc|ENSG00000185278|Q5TC79-2|ZBTB37;ENSG00000185278|ENST00000367701|ZBTB37	ZBTB37|p.V222Gfs*19|1|0.08|ENSG00000185278|chr1:173870889-173870890|-/GAGCAAACAAAAAAGGCGC|frameshift_variant	ZBTB37|p.V222Gfs*19|1|0.08|ENSG00000185278|chr1:173870889-173870890|-/GAGCAAACAAAAAAGGCGC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2977294921875	2	529.316232	1056.61791	2.6615	0.0014088	-2.2426	-0.0011871	0.41885	0.0002217	529.3149033971241	102.63	0.38363	102.63	102.47	102.85	0					12	8	2	0	0	0	0.026782	1	11432	11432		37.812	6.2817	1	82588			58415	8242	48191	48236	64040	64040					0.09186585165844008
TVSISVIKNP	10	Unmodified	_TVSISVIKNP_					0	0	0		ZBTB37|p.V222Gfs*19|1|0.08|ENSG00000185278|chr1:173870889-173870890|-/GAGCAAACAAAAAAGGCGC|frameshift_variant;nc|ENSG00000185278|Q5TC79-3|ZBTB37;nc|ENSG00000185278|Q5TC79-2|ZBTB37;ENSG00000185278|ENST00000367701|ZBTB37	ZBTB37|p.V222Gfs*19|1|0.08|ENSG00000185278|chr1:173870889-173870890|-/GAGCAAACAAAAAAGGCGC|frameshift_variant	ZBTB37|p.V222Gfs*19|1|0.08|ENSG00000185278|chr1:173870889-173870890|-/GAGCAAACAAAAAAGGCGC|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	529.316232	1056.61791	-1.3848	-0.00073298	-0.28924	-0.0001531	-1.674	-0.00088608	529.3157083753139	103.54	0.29645	102.89	102.65	102.95	-0.65443	0.12884	0.0013855	NaN	42.864	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46122			58416	8242	48191	48236							0.09186585165844008
TVSIVASSF	9	Unmodified	_TVSIVASSF_					0	0	0			REV__ENSG00000175449|ENST00000380005|RFESD	REV__ENSG00000175449|ENST00000380005|RFESD	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.5806579589844	2	455.74765	909.480748	-0.78544	-0.00035796	-1.9273	-0.00087835	-2.7127	-0.0012363	455.7465102583398	27.864	0.25013	27.864	27.741	27.991	0					9	4	3	0	0	0	0.027456	1	870	870		47.916	7.343	1	53263	+		58417	21897	48192	48237	64041	64041					0.02238676286287955
TVSKERPVL	9	Unmodified	_TVSKERPVL_					0	0	0			REV__nc|ENSG00000110713|P52948-2|NUP98	REV__nc|ENSG00000110713|P52948-2|NUP98	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.3353881835938	2	514.808574	1027.60259	-0.48897	-0.00025173	2.7777	0.00143	2.2887	0.0011782	514.808474275874	67.778	0.43351	67.778	67.408	67.842	0					14	10	2	0	0	0	0.027462	1	6320	6320		45.952	30.31	1	82857	+		58418	17999	48193	48238	64042	64042					0.0898971836866167
TVSKITIII	9	Unmodified	_TVSKITIII_					0	0	0			REV__ENST00000485325.1_1_2:112560984-112579093:-|nuORF	REV__ENST00000485325.1_1_2:112560984-112579093:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	495.2982482910156	2	494.326068	986.637583	-0.59	-0.00029165	-4.2841	-0.0021178	-4.8741	-0.0024094	494.3237136184222	88.864	0.82448	86.733	86.413	87.237	-2.1309					20	16	2	0	0	0	0.027462	1	5448	5448		37.159	5.2042	1	39199	+		58419	26562	48194	48239	64043	64043					0.14372961176616172
TVSKLILCD	9	Unmodified	_TVSKLILCD_					0	0	0			REV__ENST00000234875.8_1_1:6246387-6246558:-|nuORF	REV__ENST00000234875.8_1_1:6246387-6246558:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	495.2982482910156	2	496.27826	990.541968	-0.53799	-0.00026699	-2.921	-0.0014496	-3.459	-0.0017166	496.276310664057	88.827	0.67818	86.696	86.559	87.237	-2.1309					18	13	2	0	0	0	0.02741	1	5448	5448		42.396	0	1	35249	+		58420	23802	48195	48240	64044	64044					0.04631864994064472
TVSKYILPL	9	Unmodified	_TVSKYILPL_					0	0	0		ENST00000340001.8_1_17:67014561-67014642:-|nuORF	ENST00000340001.8_1_17:67014561-67014642:-|nuORF	ENST00000340001.8_1_17:67014561-67014642:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.3289794921875	2	517.318243	1032.62193	1.1509	0.00059539	3.6588	0.0018928	4.8097	0.0024881	517.3200446585751	119.25	0.8942	119.25	118.49	119.38	0					25	18	2	0	0	0	0.027462	1	13695	13695		21.96	0	1	83519			58421	10555	48196	48241	64045	64045					0.10692674659571821
TVSLIRWL	8	Unmodified	_TVSLIRWL_					0	0	0			REV__ENST00000480952.1_1_1:54298234-54304135:-|nuORF	REV__ENST00000480952.1_1_1:54298234-54304135:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.7723693847656	2	494.302927	986.591301	-0.82502	-0.00040781	4.0775	0.0020155	3.2525	0.0016077	494.3049176025493	52.528	0.54235	49.716	49.444	49.986	-2.8129					14	10	2	0	0	0	0.028476	1	3498	3498		35.618	0	1	21491	+		58422	26470	48197	48242	64046	64046					0.09746941065179726
TVSNLREAI	9	Unmodified	_TVSNLREAI_					0	0	0			REV__tr|A0A7D6VSV8|A0A7D6VSV8_9CLOTAdenylyl-sulfatereductasesubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_00540PE=4SV=1	REV__tr|A0A7D6VSV8|A0A7D6VSV8_9CLOTAdenylyl-sulfatereductasesubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_00540PE=4SV=1	MSMS	OvCa9_classI_Rep4_	4	501.7817077636719	2	501.782556	1001.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.085	1	65.595	65.095	66.095	-3.4902								0	0	0	0.16872	1	5155	5155		54.776	3.5836	1		+		58423	31545	48198	48243	64047	64047					0.04984554954887699
TVSPKEISV	9	Unmodified	_TVSPKEISV_					0	0	0			REV__ZAN|p.S2325Lfs*5|1|0.06|ENSG00000146839|chr7:100786133-100786134|-/G|frameshift_variant	REV__ZAN|p.S2325Lfs*5|1|0.06|ENSG00000146839|chr7:100786133-100786134|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.78125	2	480.274032	958.533512	0.21381	0.00010269	0.19721	9.4713E-05	0.41102	0.0001974	480.2740140004687	82.322	1.0309	80.674	80.334	81.365	-1.6485					33	19	2	0	0	0	0.027447	1	7001	7001		18.262	0	1	221750	+		58424	20030	48199	48244	64048	64048					0.05258634349104341
TVSQAALEPS	10	Unmodified	_TVSQAALEPS_					0	0	0			REV__ENST00000478452.1_1_10:99221527-99222458:-|nuORF	REV__ENST00000478452.1_1_10:99221527-99222458:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.3168029785156	2	501.758746	1001.50294	-0.23576	-0.0001183	-0.63288	-0.00031756	-0.86865	-0.00043585	501.7587065797117	71.221	0.39645	71.221	71.031	71.427	0					15	9	2	0	0	0	0.026688	1	6851	6851		32.812	0	1	244400	+		58425	20417	48200	48245	64049	64049					0.002248559640520398
TVSTVGISII	10	Unmodified	_TVSTVGISII_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-MSMS	OvCa99_classI_Rep5	1	495.2987060546875	2	495.297507	988.580462	2.3316	0.0011549	-0.28574	-0.00014153	2.0459	0.0010133	495.29729872388947	86.741	1.241	86.741	86.471	87.712	0					87	29	5	0	0	0	0.16729	2	9137	9137;9198		99.375	0	1	27454000			58426	5199	48201	48246	64050;64051	64050					0.08571493900251426
TVSTVGISII	10	Unmodified	_TVSTVGISII_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-MSMS	OvCa9_classI_Rep2	2	495.2964172363281	2	495.297507	988.580462	1.9287	0.00095527	-2.4176	-0.0011974	-0.48887	-0.00024214	495.29619133273764	88.345	1.7759	86.977	86.641	88.417	-1.3676					106	35	4	0	0	0	0.10773	2	7777	7770;7777		111.65	0	1	1318600			58427	5199	48201	48246	64052;64053	64053					0.08571493900251426
TVSTVGISII	10	Unmodified	_TVSTVGISII_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-MSMS	OvCa9_classI_Rep3	3	495.2979431152344	2	495.297507	988.580462	-0.59494	-0.00029467	0.21543	0.0001067	-0.37951	-0.00018797	495.2974998070993	89.05	2.3659	86.919	86.607	88.973	-2.1309					110	46	4	0	0	0	0.062139	2	5453	5453;5486		124.59	3.9733	1	2173300			58428	5199	48201	48246	64054;64055	64054					0.08571493900251426
TVSVGRGVSP	10	Unmodified	_TVSVGRGVSP_					0	0	0			REV__ENST00000292433.3_1_19:13261264-13263838:+|nuORF	REV__ENST00000292433.3_1_19:13261264-13263838:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.799560546875	2	479.769448	957.524344	-0.10939	-5.2481E-05	0.18018	8.6445E-05	0.070792	3.3964E-05	479.76939644810744	51.491	0.42053	51.491	51.248	51.669	0					12	9	3	0	0	0	0.026523	1	3972	3972		71.877	8.5712	1	145610	+		58429	24161	48202	48247	64056	64056					0.04388285783431911
TVSVKEGE	8	Unmodified	_TVSVKEGE_					0	0	0			REV__ENSG00000103642|ENST00000261893|LACTB	REV__ENSG00000103642|ENST00000261893|LACTB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	424.2028503417969	2	424.721633	847.428712	-0.29408	-0.0001249	2.1708	0.00092197	1.8767	0.00079707	424.7224213389226	56.038	0.70677	52.744	52.464	53.171	-3.2944					17	13	2	0	0	0	0.028476	1	3533	3533		24.203	0	1	16233	+		58430	17628	48203	48248	64057	64057					-0.0011048712747196987
TVTLAVPRL	9	Unmodified	_TVTLAVPRL_					0	0	0			REV__ITGA10|p.P814Lfs*28|1|0.27|ENSG00000143127|chr1:145897644-145897647|TGGG/-|frameshift_variant	REV__ITGA10|p.P814Lfs*28|1|0.27|ENSG00000143127|chr1:145897644-145897647|TGGG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.3024597167969	2	485.30821	968.601866	-0.57391	-0.00027852	0.81987	0.00039789	0.24596	0.00011937	485.308488164208	106.19	1.0772	104.18	103.74	104.82	-2.0161					53	20	3	0	0	0	0.3076	1	9659	9659		62.107	5.3864	1	302800	+		58431	19818	48204	48249	64058	64058					0.11630923719621933
TVTLKSFQPL	10	Unmodified	_TVTLKSFQPL_					0	0	0			REV__nc|ENSG00000131941|Q8IUC4-2|RHPN2	REV__nc|ENSG00000131941|Q8IUC4-2|RHPN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.329345703125	2	567.331882	1132.64921	-0.48412	-0.00027465	-3.1025	-0.0017602	-3.5866	-0.0020348	567.3299446868054	145.54	4.8872	144.11	142.68	147.57	-1.4357					247	95	4	0	0	0	0.64697	1	14392	14392		36.447	2.2742	1	208760	+		58432	19043	48205	48250	64059	64059					0.0881915819995811
TVTLQSIAME	10	Unmodified	_TVTLQSIAME_					0	0	0		tr|A0A7D7ACQ6|A0A7D7ACQ6_9CLOTType4apilusbiogenesisproteinPilOOS=ClostridiumintestinaleOX=36845GN=HZF06_20225PE=4SV=1	tr|A0A7D7ACQ6|A0A7D7ACQ6_9CLOTType4apilusbiogenesisproteinPilOOS=ClostridiumintestinaleOX=36845GN=HZF06_20225PE=4SV=1	tr|A0A7D7ACQ6|A0A7D7ACQ6_9CLOTType4apilusbiogenesisproteinPilOOS=ClostridiumintestinaleOX=36845GN=HZF06_20225PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	546.78125	2	546.783907	1091.55326	-0.38383	-0.00020987	-2.8235	-0.0015438	-3.2073	-0.0017537	546.7822736350716	121.95	3.3566	121.74	121.33	124.69	-0.21033					164	67	4	0	0	0	0.50999	1	11853	11853		52.937	0.63753	1	467550			58433	36233	48206	48251	64060	64060					0.01114642297534374
TVTLRMEN	8	Unmodified	_TVTLRMEN_					0	0	0		tr|A0A553SQ92|A0A553SQ92_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_22310PE=4SV=1	tr|A0A553SQ92|A0A553SQ92_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_22310PE=4SV=1	tr|A0A553SQ92|A0A553SQ92_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_22310PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.2782897949219	2	482.250034	962.485516	-0.52405	-0.00025272	-1.4755	-0.00071155	-1.9995	-0.00096428	482.249697952642	82.625	1.8539	79.942	79.489	81.343	-2.683					53	37	3	0	0	0	0.028476	1	6920	6920		39.253	7.298	1	75236			58434	34135	48207	48252	64061	64061					0.0027723715739966792
TVTLVSSLR	9	Unmodified	_TVTLVSSLR_					0	0	0		tr|A0A553SUP6|A0A553SUP6_NIACIFattyaciddesaturaseOS=NialliacirculansOX=1397GN=CEQ21_04985PE=4SV=1	tr|A0A553SUP6|A0A553SUP6_NIACIFattyaciddesaturaseOS=NialliacirculansOX=1397GN=CEQ21_04985PE=4SV=1	tr|A0A553SUP6|A0A553SUP6_NIACIFattyaciddesaturaseOS=NialliacirculansOX=1397GN=CEQ21_04985PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.7496032714844	2	488.295299	974.576045	-0.50546	-0.00024681	1.9212	0.00093813	1.4158	0.00069132	488.2961186510373	48.594	0.43981	48.594	48.455	48.895	0					16	9	2	0	0	0	0.027462	1	3582	3582		31.53	24.794	1	107490			58435	34629	48208	48253	64062	64062					0.087740294773198
TVTNFFIAN	9	Unmodified	_TVTNFFIAN_					0	0	0		ENSG00000185149|ENST00000329476|NPY2R	ENSG00000185149|ENST00000329476|NPY2R	ENSG00000185149|ENST00000329476|NPY2R	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.8079833984375	2	513.766374	1025.5182	0.55935	0.00028737	-0.9125	-0.00046881	-0.35315	-0.00018144	513.765928902407	110.69	1.9475	109.09	108.6	110.54	-1.6011					81	36	4	0	0	0	0.027462	1	10350	10350		24.519	7.0512	1	166990			58436	8229	48209	48254	64063	64063					0.0064576755189591495
TVTNFFIAN	9	Unmodified	_TVTNFFIAN_					0	0	0		ENSG00000185149|ENST00000329476|NPY2R	ENSG00000185149|ENST00000329476|NPY2R	ENSG00000185149|ENST00000329476|NPY2R	MULTI-MATCH	OvCa9_classI_Rep2	2		2	513.766374	1025.5182	0.1982	0.00010183	-0.36684	-0.00018847	-0.16864	-8.6643E-05	513.7660838281	109.32	1.3852	109.15	108.67	110.06	-0.17236	0.066861	0.0002963	NaN	39.253	63	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	146480			58437	8229	48209	48254							0.0064576755189591495
TVTNFFIAN	9	Unmodified	_TVTNFFIAN_					0	0	0		ENSG00000185149|ENST00000329476|NPY2R	ENSG00000185149|ENST00000329476|NPY2R	ENSG00000185149|ENST00000329476|NPY2R	MULTI-MATCH	OvCa9_classI_Rep3	3		2	513.766374	1025.5182	0.54427	0.00027963	-0.76747	-0.0003943	-0.2232	-0.00011467	513.7659615177266	110.15	1.4984	109.01	108.61	110.11	-1.1444	-0.07614	-0.00011536	NaN	39.253	75	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	164650			58438	8229	48209	48254							0.0064576755189591495
TVTNLPKGP	9	Unmodified	_TVTNLPKGP_					0	0	0			REV__nc|ENSG00000141384|Q92750-2|TAF4B	REV__nc|ENSG00000141384|Q92750-2|TAF4B	MULTI-SECPEP	OvCa99_classI_Rep5	1	463.7422790527344	2	463.768917	925.523281	2.3118	0.0010721	0.080186	3.7188E-05	2.3919	0.0011093	463.7688634846771	95.891	0.50137	95.891	95.538	96.039	0					14	11	2	0	0	0	0.027433	1	10502	10502		64.207	24.954	1	132600	+		58439	19731	48210	48255	64064	64064					0.05754071414526152
TVTNNLVVL	9	Unmodified	_TVTNNLVVL_					0	0	0		nc|ENSG00000170927|P08F94-2|PKHD1;PKHD1|p.A3983Kfs*44|1|0.16|ENSG00000170927|chr6:51619327-51619360|CAGGTACACCTGCTGAGCAGGAGCACCTGGAGCA/-|frameshift_variant;ENSG00000170927|ENST00000371117|PKHD1	nc|ENSG00000170927|P08F94-2|PKHD1	nc|ENSG00000170927|P08F94-2|PKHD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.791259765625	2	486.78985	971.565146	0.19221	9.3564E-05	-0.41888	-0.00020391	-0.22668	-0.00011034	486.7895650092993	90.351	1.3286	87.776	87.501	88.829	-2.575					79	25	4	0	0	0	0.091859	1	7858	7858		99.375	9.0051	1	1072900			58440	7155	48211	48256	64065	64065					0.07822627103041668
TVTPSQSVI	9	Unmodified	_TVTPSQSVI_					0	0	0		tr|A0A553SK81|A0A553SK81_NIACIVWAdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18295PE=4SV=1	tr|A0A553SK81|A0A553SK81_NIACIVWAdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18295PE=4SV=1	tr|A0A553SK81|A0A553SK81_NIACIVWAdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18295PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.2810363769531	2	466.258382	930.502212	-0.46293	-0.00021584	2.223	0.0010365	1.76	0.00082063	466.259061813177	50.723	0.61889	50.723	50.288	50.907	0					27	13	3	0	0	0	0.027448	1	3812	3812		35.618	0	1	174230			58441	33591	48212	48257	64066	64066					0.03418061315016985
TVTRKLVKGP	10	Unmodified	_TVTRKLVKGP_					0	0	0			REV__ENSG00000186439|ENST00000334268|TRDN	REV__ENSG00000186439|ENST00000334268|TRDN	MULTI-MSMS	OvCa9_classI_Rep3	3	549.8552856445312	2	549.853316	1097.69208	-0.6309	-0.00034691	3.9961	0.0021973	3.3652	0.0018504	549.8553329669212	132.37	1.7747	131.25	130.94	132.71	-1.1249					85	35	3	0	0	0	0.64697	1	10572	10572		36.447	0.12911	1	116890	+		58442	22583	48213	48258	64067	64067					0.14713973048060325
TVTRKYKA	8	Unmodified	_TVTRKYKA_					0	0	0		tr|A0A553SP72|A0A553SP72_NIACIPseudouridinesynthaseOS=NialliacirculansOX=1397GN=CEQ21_25860PE=3SV=1	tr|A0A553SP72|A0A553SP72_NIACIPseudouridinesynthaseOS=NialliacirculansOX=1397GN=CEQ21_25860PE=3SV=1	tr|A0A553SP72|A0A553SP72_NIACIPseudouridinesynthaseOS=NialliacirculansOX=1397GN=CEQ21_25860PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	484.2691345214844	2	483.790184	965.565815	-1.0397	-0.00050299	1.5845	0.00076657	0.54482	0.00026358	483.790519321784	49.384	0.54327	46.623	46.424	46.967	-2.7603					13	10	2	0	0	0	0.028476	1	3115	3115		29.15	10.825	1	9919.4			58443	34010	48214	48259	64068	64068					0.08165466542754984
TVTRSPRPEL	10	Unmodified	_TVTRSPRPEL_					0	0	0		ENST00000409765.5_1_7:23637106-23650815:+|nuORF	ENST00000409765.5_1_7:23637106-23650815:+|nuORF	ENST00000409765.5_1_7:23637106-23650815:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.8125	2	578.327662	1154.64077	2.1714	0.0012558	0.70835	0.00040966	2.8798	0.0016654	578.328085893459	84.522	0.41067	84.522	84.431	84.841	0					14	9	2	0	0	0	0.026681	1	8869	8869		36.447	0	1	387540			58444	11534	48215	48260	64069	64069					0.06963604283328095
TVTTVILEV	9	Unmodified	_TVTTVILEV_					0	0	0		ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	ENSG00000119203|ENST00000238112|CPSF3	MULTI-MSMS	OvCa99_classI_Rep5	1	487.7929382324219	2	487.792058	973.569563	1.7501	0.0008537	-0.19921	-9.7172E-05	1.5509	0.00075653	487.7918907067884	129.03	1.3086	129.03	128.7	130.01	0					56	27	3	0	0	0	0.31747	2	14983	14975;14983		60.972	3.5442	1	292380			58445	3346	48216	48261	64070;64071	64071					0.08172091525955238
TVTWTGRDQ	9	Unmodified	_TVTWTGRDQ_					0	0	0			REV__ENST00000499430.6_1_4:4544119-4544182:+|nuORF	REV__ENST00000499430.6_1_4:4544119-4544182:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.7781982421875	2	532.261988	1062.50942	1.2781	0.00068026	0.6638	0.00035331	1.9419	0.0010336	532.262193426398	143.93	0.83862	143.93	143.61	144.45	0					36	16	3	0	0	0	0.027462	1	16843	16843		26.693	0	1	246880	+		58446	26807	48217	48262	64072	64072					-0.019332060845727028
TVVDIFRKLG	10	Unmodified	_TVVDIFRKLG_					0	0	0		nc|ENSG00000073464|P51793-2|CLCN4;ENSG00000073464|ENST00000380833|CLCN4	nc|ENSG00000073464|P51793-2|CLCN4	nc|ENSG00000073464|P51793-2|CLCN4	MULTI-MSMS	OvCa9_classI_Rep4_	4	574.34619140625	2	574.345323	1146.67609	-0.89277	-0.00051276	-0.39225	-0.00022529	-1.285	-0.00073805	574.3449586362831	101.45	2.4722	99.179	98.03	100.5	-2.2665					104	48	3	0	0	0	0.49558	1	9117	9117		54.776	1.8396	1	675430			58447	1493	48218	48263	64073	64073					0.10862266811113841
TVVERWLI	8	Unmodified	_TVVERWLI_					0	0	0			REV__ENST00000521314.5_1_16:67198707-67203685:+|nuORF	REV__ENST00000521314.5_1_16:67198707-67203685:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	508.30133056640625	2	508.300384	1014.58622	1.47	0.00074719	0.99347	0.00050498	2.4634	0.0012522	508.3008087559392	88.242	3.2882	86.874	85.079	88.367	-1.3676					151	65	4	0	0	0	0.60331	1	7738	7738		63.306	7.8021	1	1204300	+		58448	17576	48219	48264	64074	64074					0.07950637202554844
TVVEWSNIIP	10	Unmodified	_TVVEWSNIIP_					0	0	0			REV__ENST00000426448.1_1_22:20805532-20806108:+|nuORF	REV__ENST00000426448.1_1_22:20805532-20806108:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	579.3123168945312	2	579.313689	1156.61282	-1.3424	-0.00077765	-2.7361	-0.001585	-4.0784	-0.0023627	579.3120320052601	99.586	2.05	97.901	97.474	99.524	-1.685					95	40	4	0	0	0	0.41408	1	6709	6709		66.429	5.4573	1	1018700	+		58449	25664	48220	48265	64075	64075					0.040782813032365084
TVVEWSNIIP	10	Unmodified	_TVVEWSNIIP_					0	0	0			REV__ENST00000426448.1_1_22:20805532-20806108:+|nuORF	REV__ENST00000426448.1_1_22:20805532-20806108:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.3118286132812	2	579.313689	1156.61282	-1.698	-0.00098369	-2.1647	-0.001254	-3.8627	-0.0022377	579.3123798976957	100.15	1.4185	97.825	97.315	98.734	-2.3253					83	27	4	0	0	0	0.39172	1	8967	8967		69.628	2.134	1	1089800	+		58450	25664	48220	48265	64076	64076					0.040782813032365084
TVVHYVPL	8	Unmodified	_TVVHYVPL_					0	0	0		ENSG00000166819|ENST00000300055|PLIN1	ENSG00000166819|ENST00000300055|PLIN1	ENSG00000166819|ENST00000300055|PLIN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.2856750488281	2	464.268553	926.522553	-0.63846	-0.00029642	-0.32055	-0.00014882	-0.959	-0.00044524	464.2679342764847	96.147	0.30245	93.722	93.508	93.811	-2.4256					11	5	3	0	0	0	0.028476	1	8486	8486		21.702	0	1	20086			58451	6716	48221	48266	64077	64077					0.05635276765463004
TVVITSILK	9	Unmodified	_TVVITSILK_					0	0	0			REV__tr|A0A7D6ZXM6|A0A7D6ZXM6_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13760PE=4SV=1	REV__tr|A0A7D6ZXM6|A0A7D6ZXM6_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13760PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.28131103515625	2	487.318243	972.621933	-0.19812	-9.6546E-05	-2.0271	-0.00098786	-2.2252	-0.0010844	487.31701130838036	94.289	0.3022	93.189	93.01	93.312	-1.0995					9	5	2	0	0	0	0.027462	1	8422	8422		44.117	13.799	1	11895	+		58452	32338	48222	48267	64078	64078					0.13452674659561126
TVVKDLLEV	9	Unmodified	_TVVKDLLEV_					0	0	0		ENST00000418194.6_1_2:174774940-174777875:-|nuORF	ENST00000418194.6_1_2:174774940-174777875:-|nuORF	ENST00000418194.6_1_2:174774940-174777875:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3221740722656	2	508.305332	1014.59611	1.7968	0.00091331	-1.3236	-0.00067278	0.47321	0.00024053	508.30481554050516	103.04	0.41409	103.04	102.85	103.26	0					12	9	2	0	0	0	0.027461	1	11502	11502		40.778	6.6056	1	343300			58453	11631	48223	48268	64079	64079					0.08939780417290422
TVVLARSIL	9	Unmodified	_TVVLARSIL_					0	0	0			REV__nc|ENSG00000185664|P40967-3|PMEL	REV__nc|ENSG00000185664|P40967-3|PMEL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.2903137207031	2	486.316035	970.617516	1.0989	0.00053443	-3.3838	-0.0016456	-2.2849	-0.0011112	486.3145445258471	96.786	0.95058	94.36	94.118	95.069	-2.4256					20	18	2	0	0	0	0.027185	1	8582	8582		62.107	9.1707	1	29974	+		58454	22518	48224	48269	64080	64080					0.13103210236658924
TVVNAKNNI	9	Unmodified	_TVVNAKNNI_					0	0	0			REV__nc|ENSG00000145349|Q13557-4|CAMK2D	REV__nc|ENSG00000145349|Q13557-4|CAMK2D	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.7784118652344	2	486.777274	971.539994	-0.30373	-0.00014785	0.24613	0.00011981	-0.057596	-2.8037E-05	486.77726950418986	74.302	0.90423	71.071	70.676	71.58	-3.2308					31	18	2	0	0	0	0.22621	1	5830	5830		71.877	7.6702	1	732570	+		58455	19960	48225	48270	64081	64081					0.053085723004642205
TVVNNDLGE	9	Unmodified	_TVVNNDLGE_					0	0	0		ENSG00000009335|ENST00000348165|UBE3C;ENST00000470408.5_1_7:157015856-157060446:+|nuORF	ENSG00000009335|ENST00000348165|UBE3C	ENSG00000009335|ENST00000348165|UBE3C	MULTI-SECPEP	OvCa9_classI_Rep3	3	479.78839111328125	2	480.735271	959.45599	-0.1125	-5.4085E-05	-1.9839	-0.00095374	-2.0964	-0.0010078	480.7338819525805	78.567	0.79688	76.214	75.8	76.597	-2.3527					29	15	3	0	0	0	0.027462	1	4166	4166		37.159	12.956	1	20261			58456	928	48226	48271	64082	64082					-0.025360035871017317
TVVRNLAVVF	10	Unmodified	_TVVRNLAVVF_					0	0	0		tr|A0A553SUK4|A0A553SUK4_NIACIMATEfamilyeffluxtransporterOS=NialliacirculansOX=1397GN=CEQ21_01055PE=4SV=1	tr|A0A553SUK4|A0A553SUK4_NIACIMATEfamilyeffluxtransporterOS=NialliacirculansOX=1397GN=CEQ21_01055PE=4SV=1	tr|A0A553SUK4|A0A553SUK4_NIACIMATEfamilyeffluxtransporterOS=NialliacirculansOX=1397GN=CEQ21_01055PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.3336791992188	2	559.340041	1116.66553	2.5212	0.0014102	-0.79292	-0.00044351	1.7283	0.00096668	559.3391720428486	99.997	0.3321	99.997	99.817	100.15	0					13	7	2	0	0	0	0.026994	1	11059	11059		32.812	6.0163	1	350290			58457	34617	48227	48272	64083	64083					0.11186284156701731
TVYFAEEV	8	Unmodified	_TVYFAEEV_					0	0	0		ENST00000471596.1_1_1:201459302-201465431:-|nuORF;ENST00000458271.6_1_1:201456134-201465431:-|nuORF;ENST00000532313.5_1_1:201457913-201465398:-|nuORF;ENSG00000159176|ENST00000340006|CSRP1;ENST00000526317.5_1_1:201454496-201465431:-|nuORF;ENST00000481851.1_1_1:201465194-201465431:-|nuORF	ENST00000471596.1_1_1:201459302-201465431:-|nuORF	ENST00000471596.1_1_1:201459302-201465431:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	478.301513671875	2	479.231833	956.449113	-0.39981	-0.0001916	-2.3594	-0.0011307	-2.7592	-0.0013223	479.23035358070695	87.317	1.3292	85.14	84.582	85.911	-2.1768					30	25	2	0	0	0	0.028476	1	5240	5240		18.324	4.5491	1	20328			58458	5990	48228	48273	64084	64084					-0.030853164676614142
TVYIILEY	8	Unmodified	_TVYIILEY_					0	0	0			REV__ENSG00000188124|ENST00000641124|OR2AG2	REV__ENSG00000188124|ENST00000641124|OR2AG2	MULTI-MSMS	OvCa9_classI_Rep2	2	507.282958984375	2	507.281326	1012.5481	0.0066852	3.3913E-06	4.3537	0.0022086	4.3604	0.002212	507.283412188162	31.081	1.5294	28.371	28.15	29.679	-2.7097					66	30	3	0	0	0	0.62934	1	904	904		57.811	6.4758	1	500220	+		58459	22692	48229	48274	64085	64085					0.04232706497225536
TVYILKLE	8	Unmodified	_TVYILKLE_					0	0	0			REV__ENSG00000004700|ENST00000444129|RECQL	REV__ENSG00000004700|ENST00000444129|RECQL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.7566223144531	2	489.797143	977.579734	-0.79939	-0.00039154	-0.070065	-3.4318E-05	-0.86945	-0.00042586	489.7958956097634	71.589	1.6098	68.133	67.776	69.386	-3.4563					85	32	4	0	0	0	0.028476	1	5441	5441		29.15	4.9468	1	207630	+		58460	16379	48230	48275	64086	64086					0.0900469925119296
TVYILKLE	8	Unmodified	_TVYILKLE_					0	0	0			REV__ENSG00000004700|ENST00000444129|RECQL	REV__ENSG00000004700|ENST00000444129|RECQL	MULTI-MATCH	OvCa99_classI_Rep5	1		2	489.797143	977.579734	-0.83258	-0.00040779	-2.0694	-0.0010136	-2.9019	-0.0014214	489.7958835835096	68.241	0.40244	68.241	67.996	68.398	0	0.054065	-0.00071502	NaN	29.15	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217030	+		58461	16379	48230	48275							0.0900469925119296
TVYKGLDTETT	11	Unmodified	_TVYKGLDTETT_					0	0	0		nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1;nc|ENSG00000060237|Q9H4A3-2|WNK1;ENSG00000060237|ENST00000315939|WNK1;WNK1|p.G362Afs*13|1|0.21|ENSG00000060237|chr12:827192-827192|T/-|frameshift_variant;WNK1-ERC1|5|fusion;WNK1-ERC1|4|fusion;WNK1-ERC1|3|fusion	nc|ENSG00000060237|Q9H4A3-5|WNK1	nc|ENSG00000060237|Q9H4A3-5|WNK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	614.7822875976562	2	614.3088	1226.60305	-0.12307	-7.5603E-05	-1.175	-0.00072179	-1.298	-0.00079739	614.3076870011337	104.78	0.56822	104.78	104.7	105.27	0					14	12	2	0	0	0	0.025344	1	11791	11791		33.922	7.8582	1	125880			58462	14880	48231	48276	64087	64087					-0.0011895149282281636
TVYNANVNL	9	Unmodified	_TVYNANVNL_					0	0	0		nc|ENSG00000166473|Q7Z442-2|PKD1L2;nc|ENSG00000166473|Q7Z442|PKD1L2	nc|ENSG00000166473|Q7Z442-2|PKD1L2	nc|ENSG00000166473|Q7Z442-2|PKD1L2	MULTI-MSMS	OvCa99_classI_Rep5	1	504.26416015625	2	504.261456	1006.50836	0.11312	5.7041E-05	1.2449	0.00062774	1.358	0.00068479	504.26174964651824	64.731	0.36723	64.731	64.588	64.955	0					16	8	3	0	0	0	0.44568	1	5912	5912		47.657	0	1	924380			58463	15156	48232	48277	64088	64088					0.005365795465081646
TVYPMERLL	9	Unmodified	_TVYPMERLL_					0	0	0		nc|ENSG00000050405|Q9UHB6-2|LIMA1;nc|ENSG00000050405|Q9UHB6-5|LIMA1;ENSG00000050405|ENST00000341247|LIMA1;nc|ENSG00000050405|Q9UHB6-4|LIMA1;nc|ENSG00000050405|Q9UHB6-3|LIMA1	nc|ENSG00000050405|Q9UHB6-2|LIMA1	nc|ENSG00000050405|Q9UHB6-2|LIMA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.8214111328125	2	561.30481	1120.59507	1.9867	0.0011152	-0.093238	-5.2335E-05	1.8935	0.0010628	561.3046469732875	109.21	1.2874	109.21	108.85	110.13	0					61	28	3	0	0	0	0.027444	1	12341	12341		63.534	13.509	1	827060			58464	1180	48233	48278	64089	64089					0.039592427767274785
TVYRKFDLSA	10	Unmodified	_TVYRKFDLSA_					0	0	0			REV__TFB2M|p.R170Efs*9|1|0.15|ENSG00000162851|chr1:246557429-246557429|G/-|frameshift_variant	REV__TFB2M|p.R170Efs*9|1|0.15|ENSG00000162851|chr1:246557429-246557429|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	600.323974609375	2	600.324588	1198.63462	-2.9074	-0.0017454	1.1557	0.00069379	-1.7518	-0.0010516	600.3251735089444	151.69	1.358	150.74	150.35	151.71	-0.95645					71	26	4	0	0	0	0.78463	1	12980	12980		20.947	0	1	229880	+		58465	20785	48234	48279	64090	64090					0.04325086051812832
TWCPKLVVPSG	11	Unmodified	_TWCPKLVVPSG_					0	0	0		ENST00000434344.2_1_20:55033806-55033950:+|nuORF	ENST00000434344.2_1_20:55033806-55033950:+|nuORF	ENST00000434344.2_1_20:55033806-55033950:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	593.8194580078125	2	593.818084	1185.62162	1.0516	0.00062444	0.91991	0.00054626	1.9715	0.0011707	593.8186234949121	127.89	1.6942	126.8	126.51	128.21	-1.0933					75	33	4	0	0	0	0.17933	1	10049	10049		82.75	0	1	292070			58466	11839	48235	48280	64091	64091					0.03622931668064666
TWEKGRSSRL	10	Unmodified	_TWEKGRSSRL_					0	0	0		ENST00000001008.5_1_12:2906433-2906927:+|nuORF	ENST00000001008.5_1_12:2906433-2906927:+|nuORF	ENST00000001008.5_1_12:2906433-2906927:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	407.224365234375	3	407.222916	1218.64692	1.1795	0.0004803	1.9525	0.0007951	3.1319	0.0012754	407.2235504868341	22.381	1.0975	21.043	20.574	21.672	-1.3386					64	25	3	0	0	0	0.62744	1	279	279		38.714	2.3964	1	99247			58467	9622	48236	48281	64092	64092					0.046341225148580634
TWFTAGAKLLF	11	Unmodified	_TWFTAGAKLLF_					0	0	0		nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;STAT2|p.V424Dfs*116|1|0.05|ENSG00000170581|chr12:56349496-56349497|-/GAGTGGGATCTATGGATGTCTGGTAGAT|frameshift_variant	nc|ENSG00000170581|P52630-4|STAT2	nc|ENSG00000170581|P52630-4|STAT2	MULTI-MSMS	OvCa99_classI_Rep5	1	627.8494262695312	2	627.847699	1253.68084	1.3717	0.00086122	0.77194	0.00048466	2.1436	0.0013459	627.8482023847683	143.59	2.4093	143.59	143.17	145.58	0					114	49	3	0	0	0	0.049118	4	16783	16759;16783;16808;16832		123.21	55.714	1	1737700			58468	7120	48237	48282	64093;64094;64095;64096	64094					0.06415150953898774
TWGVFAGVLI	10	Unmodified	_TWGVFAGVLI_					0	0	0			REV__ENSG00000175354|ENST00000309660|PTPN2	REV__ENSG00000175354|ENST00000309660|PTPN2	MULTI-SECPEP	OvCa9_classI_Rep2	2	531.8146362304688	2	531.80276	1061.59097	-0.3282	-0.00017454	-3.8985	-0.0020732	-4.2267	-0.0022477	531.8006415510919	112.53	0.88744	112.41	111.98	112.87	-0.12174					44	17	4	0	0	0	0.02661	1	10643	10643		68.787	14.064	1	49921	+		58469	21894	48238	48283	64097	64097					0.06263521345317713
TWHYYRFRPRW	11	Unmodified	_TWHYYRFRPRW_					0	0	0			REV__ENSG00000124140|ENST00000243964|SLC12A5	REV__ENSG00000124140|ENST00000243964|SLC12A5	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.3760986328125	3	556.616259	1666.82695	0.31956	0.00017787	4.4304	0.0024661	4.75	0.0026439	556.6184794925227	31.832	0.49637	31.832	31.608	32.105	0					19	9	3	0	0	0	0.026497	1	1344	1344		9.6461	6.6202	1	65160	+		58470	18663	48239	48284	64098	64098					0.02020846242476182
TWMGLEAIHM	10	Unmodified	_TWMGLEAIHM_					0	0	0		nc|ENSG00000112414|Q86SQ4-2|ADGRG6;nc|ENSG00000112414|Q86SQ4|ADGRG6;nc|ENSG00000112414|Q86SQ4-4|ADGRG6;ENSG00000112414|ENST00000367609|ADGRG6	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	nc|ENSG00000112414|Q86SQ4-2|ADGRG6	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.7926635742188	2	594.780644	1187.54674	1.5691	0.0009333	-1.6669	-0.00099144	-0.097753	-5.8141E-05	594.7796381698782	147.51	0.92236	147.51	147.16	148.08	0					51	18	3	0	0	0	0.026665	1	17262	17262		60.972	2.19	1	1365100			58471	2904	48240	48285	64099	64099					-0.039535741348345255
TWPARPRPRP	10	Unmodified	_TWPARPRPRP_					0	0	0			REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF	REV__ENST00000517666.5_1_8:124333376-124408650:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	617.3504638671875	2	617.351806	1232.68906	-4.0098	-0.0024755	1.48	0.00091369	-2.5298	-0.0015618	617.3525047754998	151.58	1.1368	151.35	150.94	152.08	-0.22696					56	22	4	0	0	0	0.73378	1	15414	15414		26.693	4.733	1	109310	+		58472	27016	48241	48286	64100	64100					0.0820214271388977
TWPDLEPPILT	11	Unmodified	_TWPDLEPPILT_					0	0	0			REV__ENST00000395245.8_2_17:27041357-27041657:-|nuORF	REV__ENST00000395245.8_2_17:27041357-27041657:-|nuORF	MSMS	OvCa99_classI_Rep5	1	641.343017578125	2	641.339904	1280.66525	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.765	1	77.765	77.265	78.265	0								0	0	0	0.19254	1	7855	7855		44.377	0	1		+		58473	25310	48242	48287	64101	64101					0.03614819646190881
TWQPPALL	8	Unmodified	_TWQPPALL_					0	0	0		ENSG00000103184|ENST00000251170|SEC14L5	ENSG00000103184|ENST00000251170|SEC14L5	ENSG00000103184|ENST00000251170|SEC14L5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.29498291015625	2	463.260728	924.506903	-1.3018	-0.00060306	-3.5994	-0.0016675	-4.9012	-0.0022705	463.25896141466575	106.53	0.4617	104.51	104.31	104.77	-2.0161					13	8	2	0	0	0	0.028476	1	9690	9690		68.485	20.569	1	19190			58474	2291	48243	48288	64102	64102					0.04162990248414644
TWQPPALL	8	Unmodified	_TWQPPALL_					0	0	0		ENSG00000103184|ENST00000251170|SEC14L5	ENSG00000103184|ENST00000251170|SEC14L5	ENSG00000103184|ENST00000251170|SEC14L5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	463.260728	924.506903	0.33488	0.00015514	-4.3735	-0.0020261	-4.0386	-0.0018709	463.2586723749948	105.92	0.57298	104.57	104.25	104.82	-1.3482	0.028997	-0.00018668	NaN	68.485	12	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17383			58475	2291	48243	48288							0.04162990248414644
TWRRGDALS	9	Unmodified	_TWRRGDALS_					0	0	0		nc|ENSG00000204977|O60858-2|TRIM13;TRIM13|p.E187Afs*13|1|0.05|ENSG00000204977|chr13:50012499-50012500|-/C|frameshift_variant;TRIM13|p.L317Ffs*26|1|0.08|ENSG00000204977|chr13:50012890-50012891|-/C|frameshift_variant;ENSG00000204977|ENST00000378182|TRIM13;nc|ENSG00000204977|O60858-3|TRIM13	nc|ENSG00000204977|O60858-2|TRIM13	nc|ENSG00000204977|O60858-2|TRIM13	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.290771484375	2	531.277972	1060.54139	-0.31503	-0.00016737	-1.4263	-0.00075776	-1.7413	-0.00092512	531.2774782618208	35.834	0.73603	35.834	35.475	36.211	0					33	15	3	0	0	0	0.027462	1	1889	1889		47.657	7.0847	1	271580			58476	9043	48244	48289	64103	64103					0.013542063892373335
TWTPSALKF	9	Unmodified	_TWTPSALKF_					0	0	0		ENSG00000142173|ENST00000300527|COL6A2;nc|ENSG00000142173|P12110-3|COL6A2;nc|ENSG00000142173|P12110-2|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	ENSG00000142173|ENST00000300527|COL6A2	MULTI-MSMS	OvCa99_classI_Rep5	1	525.7860717773438	2	525.784567	1049.55458	1.443	0.0007587	0.27779	0.00014606	1.7208	0.00090475	525.7845506191434	110.09	1.7422	110.09	109.73	111.47	0					68	38	3	0	0	0	0.11471	2	12498	12475;12498		93.195	16.349	1	2105400			58477	4957	48245	48290	64104;64105	64105					0.031786444485987886
TWVHSSQFQI	10	Unmodified	_TWVHSSQFQI_					0	0	0			REV__ENSG00000155719|ENST00000646100|OTOA	REV__ENSG00000155719|ENST00000646100|OTOA	MULTI-MSMS	OvCa99_classI_Rep5	1	411.54241943359375	3	411.540134	1231.59857	0.57552	0.00023685	2.186	0.00089962	2.7615	0.0011365	411.5409498035375	61.798	3.0099	61.798	59.611	62.621	0					198	72	4	0	0	0	0.59703	1	5447	5447		46.457	8.9486	1	6779100	+		58478	20436	48246	48291	64106	64106					-0.007963711250340566
TWWKEPLNI	9	Unmodified	_TWWKEPLNI_					0	0	0		nc|ENSG00000105976|P08581-2|MET	nc|ENSG00000105976|P08581-2|MET	nc|ENSG00000105976|P08581-2|MET	MULTI-MSMS	OvCa9_classI_Rep4_	4	593.8181762695312	2	593.816399	1185.61824	0.36929	0.00021929	4.4749	0.0026573	4.8442	0.0028766	593.8189617762521	128.17	1.5154	126.74	126.45	127.96	-1.4357					82	29	4	0	0	0	0.19758	1	12235	12235		76.774	3.8949	1	392990			58479	14943	48247	48292	64107	64107					0.03286004885717375
TWWRRWQPRVW	11	Unmodified	_TWWRRWQPRVW_					0	0	0		ENSG00000131398|ENST00000477616|KCNC3	ENSG00000131398|ENST00000477616|KCNC3	ENSG00000131398|ENST00000477616|KCNC3	MULTI-MSMS	OvCa9_classI_Rep2	2	553.2960815429688	3	552.960138	1655.85858	1.1848	0.00065516	0.0012373	6.8419E-07	1.1861	0.00065584	552.9600595878891	82.158	1.1347	80.51	80.231	81.365	-1.6485					80	21	5	0	0	0	0.72582	1	7002	7002		1.523	1.1516	1	672110			58480	4063	48248	48293	64108	64108					0.05688838996434242
TWWRRWQPRVW	11	Unmodified	_TWWRRWQPRVW_					0	0	0		ENSG00000131398|ENST00000477616|KCNC3	ENSG00000131398|ENST00000477616|KCNC3	ENSG00000131398|ENST00000477616|KCNC3	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.9623413085938	3	552.960138	1655.85858	-0.17941	-9.9207E-05	1.359	0.00075147	1.1796	0.00065227	552.9608274090268	83.09	1.2186	80.407	80.124	81.343	-2.683					77	24	4	0	0	0	0.72548	1	6887	6887		9.2118	8.8404	1	665350			58481	4063	48248	48293	64109	64109					0.05688838996434242
TWYPVSIPAF	10	Unmodified	_TWYPVSIPAF_					0	0	0		ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	MULTI-MSMS	OvCa99_classI_Rep5	1	590.8063354492188	2	590.8055	1179.59645	0.64739	0.00038248	0.89661	0.00052972	1.544	0.0009122	590.8058621093834	160.22	2.2185	160.22	159.86	162.07	0					115	43	5	0	0	0	0.26627	2	18776	18776;18799		84.916	22.808	1	904270			58482	6596	48249	48294	64110;64111	64110					0.01383200137138374
TWYRRCFVRIR	11	Unmodified	_TWYRRCFVRIR_					0	0	0		SV2C|p.I491Ffs*18|1|0.08|ENSG00000122012|chr5:76295910-76295911|-/TTTTGGAAGGACAC|frameshift_variant;ENSG00000122012|ENST00000502798|SV2C	SV2C|p.I491Ffs*18|1|0.08|ENSG00000122012|chr5:76295910-76295911|-/TTTTGGAAGGACAC|frameshift_variant	SV2C|p.I491Ffs*18|1|0.08|ENSG00000122012|chr5:76295910-76295911|-/TTTTGGAAGGACAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	519.2850952148438	3	519.285745	1554.83541	-0.97435	-0.00050597	-0.11774	-6.1141E-05	-1.0921	-0.00056711	519.2856367243071	92.405	2.1918	90.38	90.089	92.281	-2.0241					115	44	5	0	0	0	0.72458	3	5886	5844;5849;5886		21.032	6.8837	1	2226400			58483	3511	48250	48295	64112;64113;64114	64114					0.08018076887447023
TYADTVESSKS	11	Unmodified	_TYADTVESSKS_					0	0	0			REV__nc|ENSG00000101745|Q6UB98-2|ANKRD12	REV__nc|ENSG00000101745|Q6UB98-2|ANKRD12	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.8159790039062	2	594.274958	1186.53536	1.8734	0.0011133	0.7181	0.00042675	2.5915	0.00154	594.2752834975764	79.491	0.55932	79.491	79.311	79.87	0					21	13	2	0	0	0	0.025528	1	8124	8124		35.152	7.2698	1	676270	+		58484	17515	48251	48296	64115	64115					-0.05044401423629097
TYAEKLHRL	9	Unmodified	_TYAEKLHRL_					0	0	0		nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.E3356Afs*12|1|0.31|ENSG00000151914|chr6:56535225-56535226|-/CCAG|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;DST|p.A2546Pfs*8|1|0.39|ENSG00000151914|chr6:56560327-56560327|C/-|frameshift_variant;ENST00000523967.5_1_6:56504020-56716372:-|nuORF;nc|ENSG00000151914|Q03001-13|DST;ENST00000521104.1_1_6:56504020-56557947:-|nuORF;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001|DST	MULTI-MSMS	OvCa99_classI_Rep5	1	565.8182373046875	2	565.819473	1129.62439	0.78273	0.00044288	-1.0782	-0.00061007	-0.29548	-0.00016719	565.818724215909	45.516	1.0395	45.516	45.114	46.154	0					63	23	4	0	0	0	0.1149	1	3148	3148		93.143	28.936	1	1863700			58485	5594;15096	48252	48297	64116	64116					0.06476523117225952
TYAPVAFRYF	10	Unmodified	_TYAPVAFRYF_					0	0	0		nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF;ENST00000486048.2_1_1:151204736-151206704:+|nuORF;ENST00000587482.1_1_19:3649915-3700388:-|nuORF;nc|ENSG00000143398|Q99755-2|PIP5K1A;nc|ENSG00000143398|Q99755-4|PIP5K1A;nc|ENSG00000143398|Q99755-3|PIP5K1A;ENSG00000143398|ENST00000368888|PIP5K1A;nc|ENSG00000186111|O60331-4|PIP5K1C;ENSG00000186111|ENST00000335312|PIP5K1C;nc|ENSG00000186111|O60331-2|PIP5K1C;nc|ENSG00000186111|O60331-3|PIP5K1C	nc|ENSG00000180764|A2A3N6|PIPSL	nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-MSMS	OvCa99_classI_Rep5	1	617.819091796875	2	617.816399	1233.61824	1.6447	0.0010161	-0.73004	-0.00045103	0.9147	0.00056511	617.8169314500592	118.51	0.84966	118.51	118.2	119.05	0					35	17	3	0	0	0	0.45788	3	13587	13582;13587;13609		65.465	24.039	1	328910			58486	12529	48253	48298	64117;64118;64119	64118					0.010780048856986468
TYAYRDLKH	9	Unmodified	_TYAYRDLKH_					0	0	0			REV__tr|A0A553SRC1|A0A553SRC1_NIACIGrpBfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00785PE=4SV=1	REV__tr|A0A553SRC1|A0A553SRC1_NIACIGrpBfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00785PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8034057617188	2	583.80128	1165.58801	0.97841	0.0005712	1.9394	0.0011322	2.9178	0.0017034	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.69913	1	1360	1360		18.262	1.7889	1	155970	+		58487	30718	48254	48299	64120	64120					0.011836462205110365
TYCCTYLFI	9	Carbamidomethyl (C)	_TYC(Carbamidomethyl (C))CTYLFI_	TYC(0.775)C(0.225)TYLFI		TYC(5.4)C(-5.4)TYLFI		0	1	0			REV__ENSG00000006695|ENST00000261643|COX10	REV__ENSG00000006695|ENST00000261643|COX10	MULTI-MSMS	OvCa99_classI_Rep5	1	592.261474609375	2	592.261753	1182.50895	2.1661	0.0012829	-3.4411	-0.002038	-1.2749	-0.0007551	592.2594883970626	76.601	1.1845	76.601	76.238	77.422	0					67	28	3	0	0	0	0.40667	1	7681	7681		51.335	7.6847	2	2272800	+		58488	16423	48255	48300	64121	64121	186				-0.07500085120318545
TYDKGYQF	8	Unmodified	_TYDKGYQF_					0	0	0		nc|ENSG00000139197|P50542-2|PEX5;nc|ENSG00000139197|P50542-3|PEX5;ENSG00000139197|ENST00000675855|PEX5;nc|ENSG00000139197|P50542-4|PEX5	nc|ENSG00000139197|P50542-2|PEX5	nc|ENSG00000139197|P50542-2|PEX5	MULTI-MSMS	OvCa99_classI_Rep5	1	511.23626708984375	2	511.234907	1020.45526	0.66609	0.00034053	-0.14194	-7.2564E-05	0.52415	0.00026797	511.2342641872017	66.856	1.1912	66.856	66.531	67.723	0					94	29	5	0	0	0	0.50747	2	6209	6209;6244		76.774	11.665	1	8283900			58489	4755	48256	48301	64122;64123	64122					-0.05414798236131446
TYDNVHQQF	9	Unmodified	_TYDNVHQQF_					0	0	0		nc|ENSG00000138639|Q8N264-3|ARHGAP24;nc|ENSG00000138639|Q8N264-2|ARHGAP24;ARHGAP24|p.K657Tfs*7|1|0.04|ENSG00000138639|chr4:85995623-85995624|-/C|frameshift_variant;ENSG00000138639|ENST00000395184|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	MULTI-MSMS	OvCa99_classI_Rep5	1	576.26123046875	2	576.259445	1150.50434	-0.42317	-0.00024385	0.07059	4.0678E-05	-0.35258	-0.00020318	576.2593380239758	60.377	1.1733	60.377	60.116	61.289	0					79	27	4	0	0	0	0.013371	2	5262	5262;5293		158.07	72.715	1	4705400			58490	107	48257	48302	64124;64125	64124					-0.06489509947186889
TYDNVHQQF	9	Unmodified	_TYDNVHQQF_					0	0	0		nc|ENSG00000138639|Q8N264-3|ARHGAP24;nc|ENSG00000138639|Q8N264-2|ARHGAP24;ARHGAP24|p.K657Tfs*7|1|0.04|ENSG00000138639|chr4:85995623-85995624|-/C|frameshift_variant;ENSG00000138639|ENST00000395184|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	nc|ENSG00000138639|Q8N264-3|ARHGAP24	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	576.259445	1150.50434	-0.26418	-0.00015224	-5.95	-0.0034288	-6.2142	-0.003581	576.2557106626941	64.221	1.2625	60.746	60.539	61.802	-3.475	0.1845	-0.0047985	NaN	158.07	53	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	126430			58491	107	48257	48302							-0.06489509947186889
TYDSVTDKF	9	Unmodified	_TYDSVTDKF_					0	0	0		XPO1-USP34|2|fusion;USP34|p.K3306Nfs*3|1|0.18|ENSG00000115464|chr2:61189025-61189025|T/-|frameshift_variant;nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34;XPO1-USP34|3|fusion;ENST00000463046.5_1_2:61463458-61483580:-|nuORF	XPO1-USP34|2|fusion	XPO1-USP34|2|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	538.2521362304688	2	538.250754	1074.48696	1.6602	0.0008936	-0.142	-7.643E-05	1.5182	0.00081717	538.2505209706418	74.765	0.89091	74.765	74.478	75.369	0					41	21	3	0	0	0	0.18887	1	7408	7408		78.264	32.312	1	1788900			58492	36309	48258	48303	64126	64126					-0.047308502728583335
TYDYNFHSF	9	Unmodified	_TYDYNFHSF_					0	0	0		ENSG00000116539|ENST00000392403|ASH1L;nc|ENSG00000116539|Q9NR48|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	ENSG00000116539|ENST00000392403|ASH1L	MULTI-MSMS	OvCa99_classI_Rep5	1	597.2501831054688	2	597.248546	1192.48254	2.273	0.0013575	-0.13247	-7.9119E-05	2.1405	0.0012784	597.2483084030054	95.63	1.0495	95.63	95.328	96.378	0					68	24	4	0	0	0	0.046778	2	10435	10435;10464		120.87	62.143	1	2822900			58493	3185	48259	48304	64127;64128	64127					-0.10600314695761881
TYELKKKPI	9	Unmodified	_TYELKKKPI_					0	0	0		nc|ENSG00000146463|Q5VZL5-3|ZMYM4;ZMYM4|p.K1431Nfs*9|1|0.11|ENSG00000146463|chr1:35415698-35415698|G/-|frameshift_variant;nc|ENSG00000146463|Q5VZL5-2|ZMYM4;nc|ENSG00000146463|Q5VZL5-4|ZMYM4;ENSG00000146463|ENST00000314607|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	nc|ENSG00000146463|Q5VZL5-3|ZMYM4	MULTI-MSMS	OvCa9_classI_Rep2	2	560.3407592773438	2	560.342249	1118.66995	-4.5115	-0.002528	1.2493	0.00070003	-3.2622	-0.001828	560.3427660344651	160.69	1.3876	160.47	160.23	161.62	-0.22697					59	27	4	0	0	0	0.65371	1	16354	16354		25.574	0	1	170910			58494	5295	48260	48305	64129	64129					0.11535748579603933
TYFDKNYNL	9	Unmodified	_TYFDKNYNL_					0	0	0		nc|ENSG00000116641|Q96N67-4|DOCK7;nc|ENSG00000116641|Q96N67-3|DOCK7;nc|ENSG00000116641|Q96N67-5|DOCK7;nc|ENSG00000116641|Q96N67-2|DOCK7;nc|ENSG00000116641|Q96N67-6|DOCK7;ENSG00000116641|ENST00000635253|DOCK7;ENST00000467758.1_1_1:62941350-62941566:-|nuORF	nc|ENSG00000116641|Q96N67-4|DOCK7	nc|ENSG00000116641|Q96N67-4|DOCK7	MULTI-MSMS	OvCa99_classI_Rep5	1	589.2814331054688	2	589.279846	1176.54514	2.4617	0.0014507	0.16615	9.7911E-05	2.6279	0.0015486	589.2799333322115	87.739	1.0451	87.739	87.463	88.508	0					59	24	3	0	0	0	0.13504	1	9306	9306		87.696	27.578	1	4116000			58495	3189	48261	48306	64130	64130					-0.03607168627581814
TYFMRYTEDFY	11	Unmodified	_TYFMRYTEDFY_					0	0	0		tr|A0A7D6VUI3|A0A7D6VUI3_9CLOTNAD-dependentproteindeacetylaseOS=ClostridiumintestinaleOX=36845GN=cobBPE=3SV=1	tr|A0A7D6VUI3|A0A7D6VUI3_9CLOTNAD-dependentproteindeacetylaseOS=ClostridiumintestinaleOX=36845GN=cobBPE=3SV=1	tr|A0A7D6VUI3|A0A7D6VUI3_9CLOTNAD-dependentproteindeacetylaseOS=ClostridiumintestinaleOX=36845GN=cobBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.8446960449219	3	512.555232	1534.64387	-1.028	-0.00052693	-2.5799	-0.0013223	-3.6079	-0.0018493	512.5536219378391	100.89	0.67866	98.627	98.342	99.02	-2.2665					28	13	3	0	0	0	0.026401	1	9062	9062		8.4073	0	1	124330			58496	35187	48262	48307	64131	64131					-0.10206933444828792
TYFPMVWLFL	10	Unmodified	_TYFPMVWLFL_					0	0	0		ENST00000455123.5_1_7:95041782-95053829:-|nuORF	ENST00000455123.5_1_7:95041782-95053829:-|nuORF	ENST00000455123.5_1_7:95041782-95053829:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	440.234619140625	3	439.563111	1315.6675	0.38999	0.00017142	-1.3324	-0.00058568	-0.94242	-0.00041425	439.56251677180165	39.568	0.59547	36.858	36.657	37.252	-2.7097					14	11	2	0	0	0	0.02739	1	1969	1969		17.468	0	1	22437			58497	12094	48263	48308	64132	64132					0.022295768502999636
TYFTRLLRVV	10	Unmodified	_TYFTRLLRVV_					0	0	0			REV__ENSG00000067704|ENST00000366922|IARS2	REV__ENSG00000067704|ENST00000366922|IARS2	MULTI-MSMS	OvCa99_classI_Rep5	1	634.3783569335938	2	634.379697	1266.74484	0.70958	0.00045014	-3.9824	-0.0025264	-3.2728	-0.0020762	634.3769097150116	164.24	2.8363	164.24	163	165.84	0					295	106	3	0	0	0	0.7759	1	19161	19161		21.96	3.6978	1	532610	+		58498	16838	48264	48309	64133	64133					0.12213931110818521
TYFTRLLRVV	10	Unmodified	_TYFTRLLRVV_					0	0	0			REV__ENSG00000067704|ENST00000366922|IARS2	REV__ENSG00000067704|ENST00000366922|IARS2	MULTI-MSMS	OvCa9_classI_Rep2	2	634.3745727539062	2	634.379697	1266.74484	-5.7659	-0.0036578	3.1969	0.0020281	-2.569	-0.0016297	634.3814892688545	163.56	1.4089	163.33	162.75	164.16	-0.22696					114	47	3	0	0	0	0.82648	1	16715	16715		15.642	0.77694	1	320930	+		58499	16838	48264	48309	64134	64134					0.12213931110818521
TYFTRLLRVV	10	Unmodified	_TYFTRLLRVV_					0	0	0			REV__ENSG00000067704|ENST00000366922|IARS2	REV__ENSG00000067704|ENST00000366922|IARS2	MULTI-MSMS	OvCa9_classI_Rep3	3	634.3768920898438	2	634.379697	1266.74484	-6.5589	-0.0041609	2.7846	0.0017665	-3.7744	-0.0023944	634.3812595385845	164.92	1.7179	163.51	162.81	164.52	-1.4083					155	61	3	0	0	0	0.72319	1	14352	14352		27.882	7.8855	1	179530	+		58500	16838	48264	48309	64135	64135					0.12213931110818521
TYGEIFEKF	9	Unmodified	_TYGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	OvCa99_classI_Rep5	1	567.2803955078125	2	567.279315	1132.54408	2.2638	0.0012842	-1.1818	-0.0006704	1.082	0.0006138	567.2787878651918	108.24	5.252	108.24	107.31	112.57	0					376	118	6	0	0	0	0.0085876	16	12280	12199;12226;12256;12280;12304;12328;12352;12376;12419;12467;12528;12554;12577;12599;12650;12680		176.44	66.325	1	126230000			58501	5549	48265	48310	64136;64137;64138;64139;64140;64141;64142;64143;64144;64145;64146;64147;64148;64149;64150;64151	64139					-0.016893829964601537
TYGGEWDENSI	11	Unmodified	_TYGGEWDENSI_					0	0	0			REV__tr|A0A7D7AF78|A0A7D7AF78_9CLOTDUF4363familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04960PE=4SV=1	REV__tr|A0A7D7AF78|A0A7D7AF78_9CLOTDUF4363familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04960PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	635.7665405273438	2	635.764757	1269.51496	3.6655	0.0023304	-0.4313	-0.00027421	3.2342	0.0020562	635.7643437376506	88.06	1.2095	88.06	87.794	89.004	0					70	28	3	0	0	0	0.65063	1	9337	9337		40.058	3.6114	1	5128100	+		58502	32712	48266	48311	64152	64152					-0.10901572083412248
TYGRDVYLI	9	Unmodified	_TYGRDVYLI_					0	0	0			REV__tr|A0A7D6ZYD3|A0A7D6ZYD3_9CLOTRibosomalRNAsmallsubunitmethyltransferaseIOS=ClostridiumintestinaleOX=36845GN=rsmIPE=3SV=1	REV__tr|A0A7D6ZYD3|A0A7D6ZYD3_9CLOTRibosomalRNAsmallsubunitmethyltransferaseIOS=ClostridiumintestinaleOX=36845GN=rsmIPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7779541015625	2	550.292756	1098.57096	0.71528	0.00039361	-0.79007	-0.00043477	-0.074799	-4.1161E-05	550.2921990364993	81.499	0.20048	81.499	81.372	81.572	0					7	4	2	0	0	0	0.027462	1	8393	8393		29.15	16.943	1	175020	+		58503	32366	48267	48312	64153	64153					0.025617256147143053
TYHGFPSLQ	9	Unmodified	_TYHGFPSLQ_					0	0	0		nc|ENSG00000114026|O15527-6|OGG1;nc|ENSG00000114026|O15527-8|OGG1;nc|ENSG00000114026|O15527-2|OGG1;ENSG00000114026|ENST00000344629|OGG1;nc|ENSG00000114026|O15527-7|OGG1;nc|ENSG00000114026|O15527-5|OGG1;nc|ENSG00000114026|O15527-3|OGG1;nc|ENSG00000114026|O15527-4|OGG1;ENST00000432857.2_1_3:9792686-9793638:+|nuORF	nc|ENSG00000114026|O15527-6|OGG1	nc|ENSG00000114026|O15527-6|OGG1	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7665405273438	2	525.256174	1048.49779	-0.70056	-0.00036797	0.85943	0.00045142	0.15887	8.3449E-05	525.2566744114561	29.511	0.24968	29.511	29.387	29.636	0					7	4	2	0	0	0	0.027462	1	1046	1046		30.504	0	1	25446			58504	3007	48268	48313	64154	64154					-0.024514031078979315
TYHIIRSA	8	Unmodified	_TYHIIRSA_					0	0	0			REV__ENSG00000112139|ENST00000434837|MDGA1	REV__ENSG00000112139|ENST00000434837|MDGA1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.80126953125	2	480.766709	959.518865	-3.1786	-0.0015282	-2.0138	-0.00096815	-5.1924	-0.0024963	480.7654054502346	151.49	0.25853	150.06	149.88	150.14	-1.4344					6	4	2	0	0	0	0.028476	1	14981	14981		31.955	0	1	7150.7	+		58505	18078	48269	48314	64155	64155					0.03748606991609904
TYIDKSTQL	9	Unmodified	_TYIDKSTQL_					0	0	0		ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	MULTI-MSMS	OvCa99_classI_Rep5	1	534.7819213867188	2	534.782222	1067.54989	0.019272	1.0306E-05	-0.49256	-0.00026341	-0.47329	-0.00025311	534.7817415374647	66.596	0.56931	66.596	66.288	66.857	0					22	13	2	0	0	0	0.10502	1	6179	6179		95.815	16.103	1	2358600			58506	3409	48270	48315	64156	64156					0.01881715515196447
TYIDKSTQL	9	Unmodified	_TYIDKSTQL_					0	0	0		ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	ENSG00000119965|ENST00000481909|C10orf88	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	534.782222	1067.54989	-1.6462	-0.00088036	-3.2923	-0.0017606	-4.9385	-0.002641	534.7837886141481	70.337	0.63974	66.856	66.49	67.13	-3.4812	0.12989	-0.0025755	NaN	95.815	21	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27970			58507	3409	48270	48315							0.01881715515196447
TYIDPDALKEL	11	Unmodified	_TYIDPDALKEL_					0	0	0		nc|ENSG00000165409|P16473|TSHR;ENSG00000165409|ENST00000298171|TSHR;nc|ENSG00000165409|P16473-2|TSHR;nc|ENSG00000165409|P16473-3|TSHR	nc|ENSG00000165409|P16473|TSHR	nc|ENSG00000165409|P16473|TSHR	MULTI-MSMS	OvCa99_classI_Rep5	1	639.3359985351562	2	639.334818	1276.65508	3.0593	0.0019559	-0.63884	-0.00040843	2.4204	0.0015475	639.3343369979194	115.88	1.0573	115.88	115.58	116.64	0					58	22	4	0	0	0	0.10199	1	13247	13247		96.665	18.401	1	768490			58508	6559	48271	48316	64157	64157					0.027822119209531593
TYIFLFAH	8	Unmodified	_TYIFLFAH_					0	0	0			REV__ENST00000535572.5_1_12:1018118-1018226:+|nuORF	REV__ENST00000535572.5_1_12:1018118-1018226:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	506.267333984375	2	506.268553	1010.52255	0.36785	0.00018623	-4.4318	-0.0022437	-4.064	-0.0020575	506.2661426930151	67.368	3.7219	64.48	62.966	66.688	-2.8873					175	73	3	0	0	0	0.72134	2	2805	2805;2841		39.021	5.5059	1	90382	+		58509	27286	48272	48317	64158;64159	64158					0.01771276765452967
TYIIRALLSQ	10	Unmodified	_TYIIRALLSQ_					0	0	0			REV__ENST00000522901.1_1_5:77298728-77311267:-|nuORF	REV__ENST00000522901.1_1_5:77298728-77311267:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.8013916015625	2	589.350606	1176.68666	2.6343	0.0015525	-1.7317	-0.0010206	0.90255	0.00053192	589.3494601862433	99.383	0.37104	99.383	99.076	99.447	0					10	8	2	0	0	0	0.027088	1	10938	10938		26.693	21.135	1	275300	+		58510	27088	48273	48318	64160	64160					0.10538249465571425
TYIKFINLF	9	Unmodified	_TYIKFINLF_					0	0	0		nc|ENSG00000196961|O95782|AP2A1;ENSG00000196961|ENST00000354293|AP2A1;ENST00000597774.5_1_19:50303271-50309027:+|nuORF	nc|ENSG00000196961|O95782|AP2A1	nc|ENSG00000196961|O95782|AP2A1	MULTI-MSMS	OvCa99_classI_Rep5	1	579.833740234375	2	579.831517	1157.64848	0.2628	0.00015238	2.1769	0.0012622	2.4397	0.0014146	579.8326025357406	140.95	2.8241	140.95	140.59	143.41	0					131	56	4	0	0	0	0.064985	4	16479	16455;16479;16505;16529		110.12	38.242	1	881660			58511	8665	48274	48319	64161;64162;64163;64164	64162					0.0759636355087423
TYIKSPPFF	9	Unmodified	_TYIKSPPFF_					0	0	0		ENSG00000122729|ENST00000309951|ACO1	ENSG00000122729|ENST00000309951|ACO1	ENSG00000122729|ENST00000309951|ACO1	MULTI-MSMS	OvCa99_classI_Rep5	1	550.2963256835938	2	550.294768	1098.57498	1.3162	0.00072431	0.98145	0.00054008	2.2977	0.0012644	550.2950756747466	109.88	1.785	109.88	109.5	111.29	0					108	39	5	0	0	0	0.1243	2	12473	12473;12500		90.601	37.249	1	3998900			58512	3552	48275	48320	64165;64166	64165					0.029638151084100173
TYINPFVSF	9	Unmodified	_TYINPFVSF_					0	0	0		ENSG00000113615|ENST00000398844|SEC24A;nc|ENSG00000113615|O95486-2|SEC24A;nc|ENSG00000138802|O95487-2|SEC24B;ENSG00000138802|ENST00000265175|SEC24B;nc|ENSG00000138802|O95487-3|SEC24B	ENSG00000113615|ENST00000398844|SEC24A;nc|ENSG00000138802|O95487-2|SEC24B	ENSG00000113615|ENST00000398844|SEC24A	MULTI-MSMS	OvCa99_classI_Rep5	1	544.278076171875	2	544.276575	1086.5386	0.71802	0.0003908	1.3687	0.00074495	2.0867	0.0011357	544.2771208438678	151.68	1.0636	151.68	151.2	152.26	0					43	21	3	0	0	0	0.2422	2	17745	17745;17767		69.628	14.113	1	221420			58513	2982;4735	48276	48321	64167;64168	64167					-0.0012106178828616976
TYIPVPAKI	9	Unmodified	_TYIPVPAKI_					0	0	0		ENSG00000008513|ENST00000522652|ST3GAL1	ENSG00000008513|ENST00000522652|ST3GAL1	ENSG00000008513|ENST00000522652|ST3GAL1	MULTI-MSMS	OvCa99_classI_Rep5	1	501.30657958984375	2	501.305136	1000.59572	2.7527	0.0013799	-0.14186	-7.1116E-05	2.6108	0.0013088	501.3049841859924	99.002	0.88823	99.002	98.764	99.652	0					38	21	2	0	0	0	0.22621	1	10930	10930		71.877	5.4482	1	8944400			58514	921	48277	48322	64169	64169					0.09544405488077246
TYIQDAFQL	9	Unmodified	_TYIQDAFQL_					0	0	0		nc|ENSG00000197712|Q8IWE2-2|FAM114A1;ENSG00000197712|ENST00000358869|FAM114A1;ENST00000508737.1_1_4:38930819-38945175:+|nuORF;KLF3-FAM114A1|1|fusion	nc|ENSG00000197712|Q8IWE2-2|FAM114A1	nc|ENSG00000197712|Q8IWE2-2|FAM114A1	MULTI-MSMS	OvCa99_classI_Rep5	1	549.7788696289062	2	549.776939	1097.53933	1.6082	0.00088415	0.47286	0.00025997	2.0811	0.0011441	549.7770506861235	133.55	0.74026	133.55	133.17	133.91	0					41	15	4	0	0	0	0.37182	2	15528	15528;15550		54.722	5.2808	1	286090			58515	8738	48278	48323	64170;64171	64170					-0.005542671392504417
TYIQILESF	9	Unmodified	_TYIQILESF_					0	0	0		nc|ENSG00000187790|Q8IYD8-3|FANCM;ENSG00000187790|ENST00000267430|FANCM;FANCM|p.V586Lfs*80|1|0.98|ENSG00000187790|chr14:45164533-45164545|GTTATTATCCTTT/-|frameshift_variant;nc|ENSG00000187790|Q8IYD8-2|FANCM	nc|ENSG00000187790|Q8IYD8-3|FANCM	nc|ENSG00000187790|Q8IYD8-3|FANCM	MULTI-MSMS	OvCa99_classI_Rep5	1	557.296875	2	557.294965	1112.57538	1.1749	0.00065475	0.98764	0.00055041	2.1625	0.0012052	557.2954474951698	157.68	1.2525	157.68	157.4	158.65	0					38	25	2	0	0	0	0.1944	2	18485	18485;18503		77.318	8.5308	1	84904			58516	8435	48279	48324	64172;64173	64172					0.023591900376231933
TYIQKIFRM	9	Unmodified	_TYIQKIFRM_					0	0	0		ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF	ENSG00000087008|ENST00000356406|ACOX3	ENSG00000087008|ENST00000356406|ACOX3	MULTI-MSMS	OvCa99_classI_Rep5	1	600.3353271484375	2	600.333901	1198.65325	1.9448	0.0011675	0.19594	0.00011763	2.1407	0.0012852	600.3338576646245	93.675	1.5186	93.675	93.386	94.905	0					66	35	3	0	0	0	0.036986	2	10160	10160;10188		113.41	40.311	1	6145900			58517	1758	48280	48325	64174;64175	64174					0.06186924421990625
TYIQKIFRM	9	Unmodified	_TYIQKIFRM_					0	0	0		ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF	ENSG00000087008|ENST00000356406|ACOX3	ENSG00000087008|ENST00000356406|ACOX3	MULTI-MSMS	OvCa99_classI_Rep5	1	400.5593566894531	3	400.55836	1198.65325	3.1296	0.0012536	-0.48612	-0.00019472	2.6435	0.0010589	400.558074696185	93.652	0.79412	93.652	93.426	94.22	0					28	18	2	0	0	0	0.2077	1	10172	10172		75.043	36.29	1	1104300			58518	1758	48280	48325	64176	64176					0.06186924421990625
TYIQNFRFF	9	Unmodified	_TYIQNFRFF_					0	0	0		ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B;nc|ENSG00000204084|P32019-3|INPP5B;nc|ENSG00000204084|P32019-4|INPP5B;INPP5B-TRIT1|1|fusion	ENSG00000204084|ENST00000373024|INPP5B	ENSG00000204084|ENST00000373024|INPP5B	MULTI-MSMS	OvCa99_classI_Rep5	1	618.3176879882812	2	618.314023	1234.61349	1.6004	0.00098955	0.12199	7.5431E-05	1.7224	0.001065	618.3141307897517	126.49	0.90904	126.49	126.28	127.18	0					37	19	2	0	0	0	0.094791	2	14631	14623;14631		93.195	33.077	1	913180			58519	8946	48281	48326	64177;64178	64178					0.005571207429284186
TYIRLYGRKF	10	Unmodified	_TYIRLYGRKF_					0	0	0		ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	OvCa99_classI_Rep5	1	439.5882263183594	3	439.587307	1315.74009	1.0588	0.00046544	-0.89642	-0.00039405	0.1624	7.1389E-05	439.58683030577714	69.146	0.94007	69.146	68.9	69.84	0					59	22	4	0	0	0	0.47142	1	6556	6556		58.23	27.661	1	1995900			58520	1399	48282	48327	64179	64179					0.09485046968052302
TYISKTIAL	9	Unmodified	_TYISKTIAL_					0	0	0		nc|ENSG00000283632|Q2M3D2|EXOC3L2;EXOC3L2|p.L134Tfs*25|1|0.26|ENSG00000283632|chr19:45227667-45227668|-/G|frameshift_variant;ENSG00000283632|ENST00000413988|EXOC3L2	nc|ENSG00000283632|Q2M3D2|EXOC3L2	nc|ENSG00000283632|Q2M3D2|EXOC3L2	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.2709045410156	2	505.30005	1008.58555	2.9681	0.0014998	-1.0754	-0.00054341	1.8927	0.00095637	505.2993095695784	89.826	0.75323	89.826	89.516	90.269	0					28	17	2	0	0	0	0.027462	1	9661	9661		47.657	5.2612	1	583180			58521	9616	48283	48328	64180	64180					0.0815979776284621
TYISWKEEL	9	Unmodified	_TYISWKEEL_					0	0	0		nc|ENSG00000129003|Q709C8-3|VPS13C;ENSG00000129003|ENST00000644861|VPS13C;nc|ENSG00000129003|Q709C8-4|VPS13C;nc|ENSG00000129003|Q709C8-2|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	nc|ENSG00000129003|Q709C8-3|VPS13C	MULTI-MSMS	OvCa99_classI_Rep5	1	584.79931640625	2	584.797872	1167.58119	2.2628	0.0013233	-0.051929	-3.0368E-05	2.2108	0.0012929	584.7977450313463	100.77	2.1431	100.77	100.28	102.42	0					128	50	5	0	0	0	0.055627	4	11207	11149;11178;11207;11240		115.49	37.664	1	7603300			58522	3916	48284	48329	64181;64182;64183;64184	64183					0.004102885493011854
TYIYGASSM	9	Unmodified	_TYIYGASSM_					0	0	0			REV__UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	REV__UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.2724914550781	2	496.723318	991.432083	-1.0309	-0.00051206	1.0963	0.00054455	0.06541	3.2491E-05	496.7231178873377	73.464	0.14519	70.067	69.979	70.124	-3.3961					4	2	2	0	0	0	0.027462	1	5697	5697		45.952	6.6991	1	9261.7	+		58523	18816	48285	48330	64185	64185					-0.06397560345101283
TYKDYVDLF	9	Unmodified	_TYKDYVDLF_					0	0	0		PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant;PRKDC|p.P3973Afs*40|1|0.09|ENSG00000253729|chr8:47777811-47777812|-/C|frameshift_variant;nc|ENSG00000253729|P78527-2|PRKDC;ENSG00000253729|ENST00000314191|PRKDC;PRKDC|p.K2221Nfs*18|1|0.7|ENSG00000253729|chr8:47855320-47855320|T/-|frameshift_variant;PRKDC|p.E932Nfs*48|1|0.03|ENSG00000253729|chr8:47912550-47912550|C/-|frameshift_variant	PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant;PRKDC|p.E932Nfs*48|1|0.03|ENSG00000253729|chr8:47912550-47912550|C/-|frameshift_variant	PRKDC|p.M3609Ifs*3|1|0.41|ENSG00000253729|chr8:47788981-47788982|-/T|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	582.2881469726562	2	582.284597	1162.55464	2.1616	0.0012587	0.18491	0.00010767	2.3465	0.0013663	582.2845616582078	115.75	1.294	115.75	115.35	116.64	0					77	27	4	0	0	0	0.094616	2	13226	13205;13226		98.629	21.312	1	1757300			58524	9437;15523	48286	48331	64186;64187	64187					-0.02013400342048044
TYKGSPLVKV	10	Unmodified	_TYKGSPLVKV_					0	0	0			REV__nc|ENSG00000163629|Q12923-2|PTPN13	REV__nc|ENSG00000163629|Q12923-2|PTPN13	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.785888671875	2	546.326599	1090.63865	-1.2562	-0.00068631	-0.85912	-0.00046936	-2.1153	-0.0011557	546.3256593326896	41.263	1.2477	38.283	37.711	38.959	-2.9804					32	23	3	0	0	0	0.026931	1	1898	1898		37.812	8.662	1	20652	+		58525	20865	48287	48332	64188	64188					0.09695175545516577
TYKTSNWY	8	Unmodified	_TYKTSNWY_					0	0	0			REV__ENST00000398970.5_1_17:1340347-1340398:-|nuORF	REV__ENST00000398970.5_1_17:1340347-1340398:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.9510498046875	2	531.748182	1061.48181	-0.26463	-0.00014072	-0.77488	-0.00041204	-1.0395	-0.00055276	531.7477225012037	37.723	0.74727	34.83	34.591	35.339	-2.8925					31	14	3	0	0	0	0.028476	1	1421	1421		16.473	0	1	72740	+		58526	25384	48288	48333	64189	64189					-0.046471093448190004
TYKVISNEF	9	Unmodified	_TYKVISNEF_					0	0	0		ENST00000429033.1_1_21:32434669-32435362:-|nuORF;nc|ENSG00000114062|Q05086-2|UBE3A;ENSG00000114062|ENST00000648336|UBE3A;nc|ENSG00000114062|Q05086|UBE3A	ENST00000429033.1_1_21:32434669-32435362:-|nuORF	ENST00000429033.1_1_21:32434669-32435362:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	550.7870483398438	2	550.784764	1099.55498	1.4756	0.00081273	-0.38881	-0.00021415	1.0868	0.00059858	550.7845920273579	82.97	1.3962	82.97	82.781	84.177	0					41	32	2	0	0	0	0.1243	2	8598	8598;8626		90.601	13.283	1	3731500			58527	3010	48289	48334	64190;64191	64190					0.009180193778092871
TYKVTAVPALA	11	Unmodified	_TYKVTAVPALA_					0	0	0			REV__nc|ENSG00000182333|P07098-2|LIPF	REV__nc|ENSG00000182333|P07098-2|LIPF	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3296508789062	2	567.331882	1132.64921	-3.474	-0.0019709	-0.21845	-0.00012393	-3.6925	-0.0020949	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.69455	1	12323	12323		31.53	3.4483	1	458690	+		58528	22285	48290	48335	64192	64192					0.0881915819995811
TYLDKVENI	9	Unmodified	_TYLDKVENI_					0	0	0		nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.2676391601562	2	547.790047	1093.56554	2.8443	0.0015581	-0.81848	-0.00044835	2.0258	0.0011097	547.7896128035289	89.871	0.90463	89.871	89.516	90.421	0					52	21	4	0	0	0	0.027411	1	9628	9628		90.601	42.944	1	3643500			58529	8279	48291	48336	64193	64193					0.022500020322468117
TYLDKVENI	9	Unmodified	_TYLDKVENI_					0	0	0		nc|ENSG00000185745|P09914-2|IFIT1;ENSG00000185745|ENST00000371804|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	nc|ENSG00000185745|P09914-2|IFIT1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	547.790047	1093.56554	1.5117	0.00082807	4.1248	0.0022595	5.6365	0.0030876	548.2916109915288	90.981	0.78407	89.746	89.488	90.272	-1.2355	-0.062655	0.0051604	NaN	90.601	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13355			58530	8279	48291	48336							0.022500020322468117
TYLEKAIKI	9	Unmodified	_TYLEKAIKI_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	539.8305053710938	2	539.828975	1077.6434	2.2348	0.0012064	-0.75941	-0.00040995	1.4754	0.00079646	539.8285110394729	79.919	1.653	79.919	79.509	81.162	0					122	39	5	0	0	0	0.0072874	5	8203	8144;8172;8203;8236;8264		190.26	5.4204	1	28069000			58531	8413	48292	48337	64194;64195;64196;64197;64198	64196					0.10768059688280118
TYLEREKE	8	Unmodified	_TYLEREKE_					0	0	0		ENST00000471224.5_1_19:23990680-23991588:+|nuORF	ENST00000471224.5_1_19:23990680-23991588:+|nuORF	ENST00000471224.5_1_19:23990680-23991588:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.7584228515625	2	534.272021	1066.52949	-0.49231	-0.00026303	-1.6491	-0.00088109	-2.1415	-0.0011441	534.270525160574	42.534	0.29246	42.534	42.372	42.665	0					11	6	2	0	0	0	0.028476	1	2720	2720		53.351	3.3269	1	71690			58532	12378	48293	48338	64199	64199					-0.0011145514461077255
TYLIRGTNKR	10	Unmodified	_TYLIRGTNKR_					0	0	0		tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	611.356689453125	2	611.356754	1220.69895	-3.7398	-0.0022864	2.6738	0.0016346	-1.0661	-0.00065175	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.70152	2	15295	15254;15295		30.318	2.2362	1	331570			58533	35500	48294	48339	64200;64201	64201					0.09743285928584555
TYLIRGTNKR	10	Unmodified	_TYLIRGTNKR_					0	0	0		tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	611.353515625	2	611.356754	1220.69895	-2.3862	-0.0014588	1.1145	0.00068137	-1.2716	-0.00077742	611.3572929291362	147.43	3.7918	146.48	144.56	148.35	-0.9512					254	75	5	0	0	0	0.74374	1	12447	12447		25.574	0.12388	1	250910			58534	35500	48294	48339	64202	64202					0.09743285928584555
TYLIRGTNKR	10	Unmodified	_TYLIRGTNKR_					0	0	0		tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	611.356201171875	2	611.356754	1220.69895	-3.1571	-0.0019301	2.0725	0.001267	-1.0847	-0.00066312	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.73378	1	12737	12737		26.693	3.1702	1	666990			58535	35500	48294	48339	64203	64203					0.09743285928584555
TYLIRGTNKR	10	Unmodified	_TYLIRGTNKR_					0	0	0		tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	tr|A0A7D6ZF61|A0A7D6ZF61_9CLOTS8familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13575PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3548583984375	2	611.356754	1220.69895	-2.725	-0.001666	1.4566	0.0008905	-1.2684	-0.00077546	611.3575283211214	150.83	4.6872	149.39	148.02	152.71	-1.4344					404	109	6	0	0	0	0.79917	1	15048	15048		19.104	0.84144	1	435030			58536	35500	48294	48339	64204	64204					0.09743285928584555
TYLKAVKLF	9	Unmodified	_TYLKAVKLF_					0	0	0		ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	ENSG00000136381|ENST00000258886|IREB2	MULTI-MSMS	OvCa99_classI_Rep5	1	541.8349609375	2	541.83406	1081.65357	2.5581	0.001386	0.041339	2.2399E-05	2.5994	0.0014084	541.8339096686576	94.356	1.5741	94.356	93.964	95.538	0					74	36	4	0	0	0	0.31122	1	10266	10266		61.691	6.915	1	2483700			58537	4487	48295	48340	64205	64205					0.11600667413495103
TYLKKIPGF	9	Unmodified	_TYLKKIPGF_					0	0	0		nc|ENSG00000132824|Q13530-2|SERINC3;ENSG00000132824|ENST00000342374|SERINC3	nc|ENSG00000132824|Q13530-2|SERINC3	nc|ENSG00000132824|Q13530-2|SERINC3	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.2777709960938	2	533.81841	1065.62227	1.3892	0.00074159	0.4403	0.00023504	1.8295	0.00097663	533.8184865886949	83.144	1.1045	83.144	82.652	83.757	0					51	25	3	0	0	0	0.027462	1	8628	8628		37.159	5.6293	1	756480			58538	4177	48296	48341	64206	64206					0.0920809437943717
TYLKKIPGF	9	Unmodified	_TYLKKIPGF_					0	0	0		nc|ENSG00000132824|Q13530-2|SERINC3;ENSG00000132824|ENST00000342374|SERINC3	nc|ENSG00000132824|Q13530-2|SERINC3	nc|ENSG00000132824|Q13530-2|SERINC3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	533.81841	1065.62227	-2.0206	-0.0010786	5.0618	0.0027021	3.0412	0.0016234	534.3221792879475	84.339	0.87386	82.793	82.378	83.252	-1.5462	-0.17564	0.0030354	NaN	37.159	31	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42050			58539	4177	48296	48341							0.0920809437943717
TYLLNRKEM	9	Unmodified	_TYLLNRKEM_					0	0	0		tr|A0A7D6VTP1|A0A7D6VTP1_9CLOTRibonucleaseJOS=ClostridiumintestinaleOX=36845GN=rnjPE=3SV=1	tr|A0A7D6VTP1|A0A7D6VTP1_9CLOTRibonucleaseJOS=ClostridiumintestinaleOX=36845GN=rnjPE=3SV=1	tr|A0A7D6VTP1|A0A7D6VTP1_9CLOTRibonucleaseJOS=ClostridiumintestinaleOX=36845GN=rnjPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3136596679688	2	584.313166	1166.61178	0.96995	0.00056675	2.2682	0.0013253	3.2381	0.0018921	584.3145190889371	29.632	0.48007	26.922	26.83	27.31	-2.7097					14	9	2	0	0	0	0.70685	1	740	740		15.642	4.1308	1	10952			58540	35130	48297	48342	64207	64207					0.03513743662665547
TYLPAPEGLKF	11	Unmodified	_TYLPAPEGLKF_					0	0	0		nc|ENSG00000041982|P24821-6|TNC;nc|ENSG00000041982|P24821-5|TNC;nc|ENSG00000041982|P24821-2|TNC;nc|ENSG00000041982|P24821-3|TNC;nc|ENSG00000041982|P24821-4|TNC;ENSG00000041982|ENST00000350763|TNC;TNC|p.D866Gfs*3|1|0.06|ENSG00000041982|chr9:115078020-115078021|-/C|frameshift_variant	nc|ENSG00000041982|P24821-6|TNC	nc|ENSG00000041982|P24821-6|TNC	MULTI-MSMS	OvCa99_classI_Rep5	1	618.3386840820312	2	618.337164	1234.65977	1.7575	0.0010867	0.58088	0.00035918	2.3384	0.0014459	618.3374774323363	116.57	1.8786	116.57	116.19	118.06	0					124	40	4	0	0	0	0.043763	4	13333	13313;13333;13357;13381		120.31	46.141	1	9559600			58541	1119	48298	48343	64208;64209;64210;64211	64209					0.05183140854364865
TYLPQSYLI	9	Unmodified	_TYLPQSYLI_					0	0	0		ENSG00000136156|ENST00000647800|ITM2B;nc|ENSG00000136156|Q9Y287-2|ITM2B	ENSG00000136156|ENST00000647800|ITM2B	ENSG00000136156|ENST00000647800|ITM2B	MULTI-MSMS	OvCa99_classI_Rep5	1	549.299072265625	2	549.297507	1096.58046	0.95226	0.00052307	1.1853	0.00065111	2.1376	0.0011742	549.2979508690153	132.65	1.6345	132.65	132.23	133.86	0					76	34	4	0	0	0	0.13504	2	15431	15406;15431		87.696	23.489	1	632800			58542	4466	48299	48344	64212;64213	64213					0.03603493900232024
TYLPQTYII	9	Unmodified	_TYLPQTYII_					0	0	0		nc|ENSG00000135916|Q9NQX7-2|ITM2C;ENSG00000135916|ENST00000326427|ITM2C;nc|ENSG00000135916|Q9NQX7-3|ITM2C	nc|ENSG00000135916|Q9NQX7-2|ITM2C	nc|ENSG00000135916|Q9NQX7-2|ITM2C	MULTI-MSMS	OvCa99_classI_Rep5	1	556.30712890625	2	556.305332	1110.59611	1.9494	0.0010845	0.4695	0.00026118	2.4189	0.0013457	556.3054367784165	133.4	1.3028	133.4	133.04	134.34	0					90	27	4	0	0	0	0.029147	2	15525	15500;15525		136.27	15.647	1	1728600			58543	4429	48300	48345	64214;64215	64215					0.045237804172757023
TYLPREIL	8	Unmodified	_TYLPREIL_					0	0	0		ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	ENSG00000163428|ENST00000295628|LRRC58	MULTI-MSMS	OvCa99_classI_Rep5	1	502.791015625	2	502.792392	1003.57023	2.3996	0.0012065	0.011654	5.8597E-06	2.4112	0.0012123	502.79221693021276	98.819	0.72458	98.819	98.552	99.276	0					34	17	3	0	0	0	0.50747	1	10902	10902		76.774	5.4784	1	2365600			58544	6302	48301	48346	64216	64216					0.06858930965665877
TYLPTSPLL	9	Unmodified	_TYLPTSPLL_					0	0	0		ENSG00000078618|ENST00000352171|NRDC;nc|ENSG00000078618|O43847-2|NRDC	ENSG00000078618|ENST00000352171|NRDC	ENSG00000078618|ENST00000352171|NRDC	MULTI-MSMS	OvCa99_classI_Rep5	1	502.7887878417969	2	502.786776	1003.559	1.607	0.000808	0.19537	9.8228E-05	1.8024	0.00090623	502.78657629909475	133.31	1.3501	133.31	132.99	134.34	0					66	28	3	0	0	0	0.023378	2	15507	15507;15531		143.02	43.644	1	1054800			58545	1595	48302	48347	64217;64218	64217					0.057361088715197184
TYLRDQHFL	9	Unmodified	_TYLRDQHFL_					0	0	0		chr19:29812776-29812978|402|19.78|0.44|5.5|+|ENST00000575243|CCNE1,CCNE1;chr19:29821817-29822240|415|28.89|0.48|5.91|+|ENST00000576532|CCNE1,CCNE1;nc|ENSG00000105173|P24864-2|CCNE1;nc|ENSG00000105173|P24864-3|CCNE1;ENSG00000105173|ENST00000262643|CCNE1	chr19:29812776-29812978|402|19.78|0.44|5.5|+|ENST00000575243|CCNE1,CCNE1	chr19:29812776-29812978|402|19.78|0.44|5.5|+|ENST00000575243|CCNE1,CCNE1	MULTI-MSMS	OvCa99_classI_Rep5	1	596.8106689453125	2	596.809105	1191.60366	2.3001	0.0013727	-0.46334	-0.00027652	1.8368	0.0010962	596.8087943125465	76.386	1.5055	76.386	75.956	77.461	0					112	36	6	0	0	0	0.55011	1	7661	7661		37.812	4.9991	1	6926100			58546	409	48303	48348	64219	64219					0.015519327375614012
TYLRKIPRF	9	Unmodified	_TYLRKIPRF_					0	0	0		nc|ENSG00000175455|Q49A88-5|CCDC14;ENSG00000175455|ENST00000409697|CCDC14;nc|ENSG00000175455|Q49A88-6|CCDC14;nc|ENSG00000175455|Q49A88|CCDC14;ENST00000438440.2_1_3:123674869-123680035:-|nuORF;ENST00000485727.5_1_3:123675165-123675318:-|nuORF	nc|ENSG00000175455|Q49A88-5|CCDC14	nc|ENSG00000175455|Q49A88-5|CCDC14	MULTI-MSMS	OvCa99_classI_Rep5	1	597.3631591796875	2	597.361308	1192.70806	0.30952	0.0001849	0.051458	3.0739E-05	0.36098	0.00021564	597.3612445516357	67.355	1.2564	67.355	66.977	68.233	0					81	31	4	0	0	0	0.13482	2	6311	6282;6311		87.754	8.1414	1	4452900			58547	7545	48304	48349	64220;64221	64221					0.11941679284927886
TYLRLVFIP	9	Unmodified	_TYLRLVFIP_					0	0	0		ENST00000376062.6_1_20:30252428-30253052:-|nuORF	ENST00000376062.6_1_20:30252428-30253052:-|nuORF	ENST00000376062.6_1_20:30252428-30253052:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.8041381835938	2	561.33951	1120.66447	2.1629	0.0012141	2.0755	0.0011651	4.2384	0.0023792	561.340943099469	130.17	0.33066	130.17	130.01	130.34	0					12	6	3	0	0	0	0.027462	1	15114	15114		21.96	6.3181	1	59343			58548	11066	48305	48350	64222	64222					0.10896069787804663
TYLVNEDHI	9	Unmodified	_TYLVNEDHI_					0	0	0			REV__tr|A0A7D6VPF2|A0A7D6VPF2_9CLOTPTSglucitol/sorbitoltransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_22670PE=4SV=1	REV__tr|A0A7D6VPF2|A0A7D6VPF2_9CLOTPTSglucitol/sorbitoltransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_22670PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	551.8211669921875	2	552.272021	1102.52949	-1.1435	-0.0006315	0.99843	0.0005514	-0.14504	-8.0102E-05	552.7737883970811	62.746	1.0428	60.002	59.646	60.689	-2.7444					29	19	2	0	0	0	0.027461	1	4797	4797		49.442	0	1	16594	+		58549	31242	48306	48351	64223	64223					-0.017674551446361875
TYLYWIYN	8	Unmodified	_TYLYWIYN_					0	0	0			REV__ENST00000548283.6_1_12:112374453-112450904:-|nuORF	REV__ENST00000548283.6_1_12:112374453-112450904:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.81103515625	2	568.276575	1134.5386	0.12893	7.3269E-05	-4.11	-0.0023356	-3.981	-0.0022623	568.2741094823232	114.1	0.76314	113.04	112.79	113.55	-1.055					23	14	2	0	0	0	0.028476	1	8429	8429		42.474	3.6683	1	17677	+		58550	23006	48307	48352	64224	64224					-0.023290617882821607
TYMAEEMQE	9	Unmodified	_TYMAEEMQE_					0	0	0		ENSG00000169605|ENST00000377938|GKN1	ENSG00000169605|ENST00000377938|GKN1	ENSG00000169605|ENST00000377938|GKN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.291259765625	2	566.220282	1130.42601	2.0721	0.0011732	0.23215	0.00013145	2.3042	0.0013047	566.2203677799337	138.06	0.29128	138.06	137.82	138.11	0					10	6	2	0	0	0	0.027462	1	16095	16095		21.96	7.095	1	30876			58551	7024	48308	48353	64225	64225					-0.13398446638939276
TYMDRLIIF	9	Unmodified	_TYMDRLIIF_					0	0	0		tr|A0A7D6VZ97|A0A7D6VZ97_9CLOTOligosaccharideflippasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18760PE=4SV=1	tr|A0A7D6VZ97|A0A7D6VZ97_9CLOTOligosaccharideflippasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18760PE=4SV=1	tr|A0A7D6VZ97|A0A7D6VZ97_9CLOTOligosaccharideflippasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18760PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	586.312744140625	2	586.312635	1170.61072	2.8796	0.0016884	-3.0381	-0.0017813	-0.15843	-9.2891E-05	586.3107516361531	26.153	0.76175	23.443	23.311	24.073	-2.7097					35	18	3	0	0	0	0.59983	1	336	336		31.955	1.386	1	95087			58552	35354	48309	48354	64226	64226					0.03223529293768479
TYMGHTGAVW	10	Unmodified	_TYMGHTGAVW_					0	0	0		ENST00000474371.1_1_1:32688150-32694122:+|nuORF;ENST00000489353.5_1_1:32688042-32691823:+|nuORF;ENSG00000084623|ENST00000677711|EIF3I	ENST00000474371.1_1_1:32688150-32694122:+|nuORF	ENST00000474371.1_1_1:32688150-32694122:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	561.7564697265625	2	561.755484	1121.49641	2.836	0.0015931	-0.97575	-0.00054813	1.8602	0.001045	561.7548285802817	79.993	1.1614	79.993	79.666	80.827	0					47	27	2	0	0	0	0.24387	1	8190	8190		87.754	34.403	1	1319200			58553	1716	48310	48355	64227	64227					-0.059473604683034864
TYMKDLYQL	9	Unmodified	_TYMKDLYQL_					0	0	0		nc|ENSG00000146376|Q8N392-2|ARHGAP18;ENSG00000146376|ENST00000368149|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	nc|ENSG00000146376|Q8N392-2|ARHGAP18	MULTI-MSMS	OvCa99_classI_Rep5	1	587.7963256835938	2	587.794275	1173.574	2.3265	0.0013675	-0.38963	-0.00022902	1.9369	0.0011385	587.7940327813749	100.59	2.6533	100.59	100.28	102.93	0					122	62	2	0	0	0	0.0072874	4	11146	11146;11176;11206;11257		190.26	88.661	1	30143000			58554	5286	48311	48356	64228;64229;64230;64231	64228					-0.005847673228117856
TYMLERKPL	9	Unmodified	_TYMLERKPL_					0	0	0			REV__IL1RAPL1|p.H350P|1|0.24|ENSG00000169306|chrX:29920086-29920086|A/C|missense_variant	REV__IL1RAPL1|p.H350P|1|0.24|ENSG00000169306|chrX:29920086-29920086|A/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8178100585938	2	575.818084	1149.62162	-0.060542	-3.4861E-05	-0.35862	-0.0002065	-0.41916	-0.00024136	575.8178355273783	92.029	1.9727	90.793	90.326	92.298	-1.2355					102	37	4	0	0	0	0.35444	1	8177	8177		56.721	19.562	1	777100	+		58555	28302	48312	48357	64232	64232					0.05278931668090081
TYMLERKPL	9	Unmodified	_TYMLERKPL_					0	0	0			REV__IL1RAPL1|p.H350P|1|0.24|ENSG00000169306|chrX:29920086-29920086|A/C|missense_variant	REV__IL1RAPL1|p.H350P|1|0.24|ENSG00000169306|chrX:29920086-29920086|A/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8204956054688	2	575.818084	1149.62162	-0.88976	-0.00051234	0.42323	0.00024371	-0.46652	-0.00026863	575.8182150623272	93.926	1.9141	91.419	91.059	92.973	-2.5072					94	39	4	0	0	0	0.35444	1	8189	8189		56.721	16.148	1	736500	+		58556	28302	48312	48357	64233	64233					0.05278931668090081
TYMPHVHIL	9	Unmodified	_TYMPHVHIL_					0	0	0		nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38;ENST00000508326.5_1_5:147774339-147782111:+|nuORF	nc|ENSG00000145868|Q6PIJ6-3|FBXO38	nc|ENSG00000145868|Q6PIJ6-3|FBXO38	MULTI-MSMS	OvCa99_classI_Rep5	1	555.7929077148438	2	555.791869	1109.56919	3.5911	0.0019959	-1.4781	-0.00082152	2.113	0.0011744	555.7910573720231	88.103	0.7991	88.103	87.838	88.637	0					41	18	3	0	0	0	0.11842	1	9348	9348		92.191	44.275	1	2055700			58557	5250	48313	48358	64234	64234					0.018783933251143026
TYMPHVHIL	9	Unmodified	_TYMPHVHIL_					0	0	0		nc|ENSG00000145868|Q6PIJ6-3|FBXO38;nc|ENSG00000145868|Q6PIJ6-2|FBXO38;ENSG00000145868|ENST00000340253|FBXO38;ENST00000508326.5_1_5:147774339-147782111:+|nuORF	nc|ENSG00000145868|Q6PIJ6-3|FBXO38	nc|ENSG00000145868|Q6PIJ6-3|FBXO38	MULTI-MATCH	OvCa9_classI_Rep3	3		2	555.791869	1109.56919	-1.0439	-0.00058021	1.4627	0.00081294	0.41874	0.00023273	556.2929498263405	90.45	0.30795	88.369	88.259	88.567	-2.0805	0.13322	0.0029929	NaN	92.191	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7821.9			58558	5250	48313	48358							0.018783933251143026
TYNKVLHFF	9	Unmodified	_TYNKVLHFF_					0	0	0		ENSG00000150961|ENST00000280551|SEC24D;nc|ENSG00000150961|O94855-2|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	ENSG00000150961|ENST00000280551|SEC24D	MULTI-MSMS	OvCa99_classI_Rep5	1	584.8121948242188	2	584.811116	1167.60768	1.7612	0.00103	0.29204	0.00017079	2.0532	0.0012008	584.8111792023838	93.685	1.8173	93.685	93.386	95.204	0					128	42	4	0	0	0	0.036687	3	10158	10158;10187;10216		129.68	63.253	1	6830900			58559	5524	48314	48359	64235;64236;64237	64235					0.030580222312892147
TYNQKHSLF	9	Unmodified	_TYNQKHSLF_					0	0	0		ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	ENSG00000165175|ENST00000614558|MID1IP1	MULTI-MSMS	OvCa99_classI_Rep5	1	569.2887573242188	2	569.288005	1136.56146	-0.62475	-0.00035566	0.18524	0.00010545	-0.43951	-0.00025021	569.2881293973894	53.411	1.5064	53.411	52.828	54.334	0					114	35	5	0	0	0	0.055627	3	4252	4230;4252;4278		115.49	22.299	1	8327900			58560	6531	48315	48360	64238;64239;64240	64239					-0.001360426708288287
TYPAELNNI	9	Unmodified	_TYPAELNNI_					0	0	0		ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	ENSG00000106546|ENST00000242057|AHR	MULTI-MSMS	OvCa99_classI_Rep5	1	517.762451171875	2	517.761289	1033.50803	0.28283	0.00014644	1.8726	0.00096956	2.1554	0.001116	517.7621007707916	101.47	1.353	101.47	101.19	102.55	0					79	31	4	0	0	0	0.013607	2	11299	11273;11299		157.33	52.582	1	5016900			58561	2561	48316	48361	64241;64242	64242					-0.007388401733351202
TYPASPCSDGY	11	Unmodified	_TYPASPCSDGY_					0	0	0		ENSG00000179292|ENST00000327259|TMEM151A	ENSG00000179292|ENST00000327259|TMEM151A	ENSG00000179292|ENST00000327259|TMEM151A	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.7573852539062	2	580.731871	1159.44919	-0.25144	-0.00014602	-3.4234	-0.0019881	-3.6748	-0.0021341	580.7293827550956	64.866	0.41124	64.866	64.544	64.955	0					10	9	2	0	0	0	0.025257	1	5884	5884		44.377	10.205	1	90751			58562	7812	48317	48362	64243	64243					-0.1241568452996944
TYPEVKNKL	9	Unmodified	_TYPEVKNKL_					0	0	0		ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENST00000504558.1_1_5:75967701-75969415:+|nuORF;ENST00000512383.1_1_5:75964652-75969784:+|nuORF	ENSG00000145703|ENST00000274364|IQGAP2;ENST00000512383.1_1_5:75964652-75969784:+|nuORF	ENSG00000145703|ENST00000274364|IQGAP2	MULTI-MSMS	OvCa99_classI_Rep5	1	546.3101196289062	2	546.308406	1090.60226	-0.016484	-9.0056E-06	-0.36275	-0.00019817	-0.37923	-0.00020718	546.3081143298717	52.851	0.60868	52.851	52.522	53.131	0					34	13	3	0	0	0	0.1804	2	4175	4151;4175		79.713	20.457	1	4240600			58563	5238;12995	48318	48363	64244;64245	64245					0.06058298648804339
TYPEVKNKL	9	Unmodified	_TYPEVKNKL_					0	0	0		ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENST00000504558.1_1_5:75967701-75969415:+|nuORF;ENST00000512383.1_1_5:75964652-75969784:+|nuORF	ENSG00000145703|ENST00000274364|IQGAP2;ENST00000512383.1_1_5:75964652-75969784:+|nuORF	ENSG00000145703|ENST00000274364|IQGAP2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	546.308406	1090.60226	-1.044	-0.00057036	3.3594	0.0018353	2.3154	0.0012649	546.3099013495383	55.51	0.84385	52.706	52.282	53.126	-2.804	-0.041864	0.0028243	NaN	79.713	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58488			58564	5238;12995	48318	48363							0.06058298648804339
TYPEVKNKL	9	Unmodified	_TYPEVKNKL_					0	0	0		ENSG00000145703|ENST00000274364|IQGAP2;nc|ENSG00000145703|Q13576-3|IQGAP2;nc|ENSG00000145703|Q13576-2|IQGAP2;ENST00000504558.1_1_5:75967701-75969415:+|nuORF;ENST00000512383.1_1_5:75964652-75969784:+|nuORF	ENSG00000145703|ENST00000274364|IQGAP2;ENST00000512383.1_1_5:75964652-75969784:+|nuORF	ENSG00000145703|ENST00000274364|IQGAP2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	546.308406	1090.60226	-0.77326	-0.00042244	7.2885	0.0039818	6.5152	0.0035593	546.3127607778982	55.982	0.85977	52.687	52.412	53.272	-3.2944	-0.060722	0.0071173	NaN	79.713	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197130			58565	5238;12995	48318	48363							0.06058298648804339
TYPKIWVKV	9	Unmodified	_TYPKIWVKV_					0	0	0		nc|ENSG00000243649|P00751-2|CFB;ENSG00000243649|ENST00000425368|CFB	nc|ENSG00000243649|P00751-2|CFB	nc|ENSG00000243649|P00751-2|CFB	MULTI-MSMS	OvCa99_classI_Rep5	1	567.3416137695312	2	567.33951	1132.66447	3.7655	0.0021363	-1.2881	-0.00073078	2.4775	0.0014056	567.3386503038771	88.38	0.95581	88.38	88.087	89.043	0					65	22	4	0	0	0	0.1804	2	9389	9389;9419		79.713	22.992	1	3718900			58566	9378	48319	48364	64246;64247	64246					0.10344069787788612
TYPNTYIF	8	Unmodified	_TYPNTYIF_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-MSMS	OvCa99_classI_Rep5	1	509.74847412109375	2	509.74765	1017.48075	2.3295	0.0011875	-0.55141	-0.00028108	1.7781	0.00090638	509.747268773949	120.71	1.131	120.71	120.44	121.57	0					47	25	3	0	0	0	0.50674	1	13888	13888		76.847	11.043	1	561530			58567	2130	48320	48365	64248	64248					-0.027293237137314463
TYPQLEGFKF	10	Unmodified	_TYPQLEGFKF_					0	0	0		nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4;nc|ENSG00000128815|Q6ZS81-5|WDFY4;nc|ENSG00000128815|Q6ZS81-2|WDFY4;nc|ENSG00000128815|Q6ZS81-3|WDFY4	nc|ENSG00000128815|Q6ZS81-4|WDFY4	nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-MSMS	OvCa99_classI_Rep5	1	615.3145141601562	2	615.313689	1228.61282	1.9786	0.0012175	0.71031	0.00043707	2.6889	0.0016545	615.3139652772866	118.23	0.88717	118.23	117.93	118.81	0					52	18	4	0	0	0	0.44722	1	13548	13548		61.691	6.915	1	1194800			58568	3905	48321	48366	64249	64249					0.007662813032311533
TYPTKSKA	8	Unmodified	_TYPTKSKA_					0	0	0			REV__ENSG00000232040|ENST00000452236|SCAND3	REV__ENSG00000232040|ENST00000452236|SCAND3	MULTI-SECPEP	OvCa99_classI_Rep5	1	448.25634765625	2	448.247818	894.481082	0.62992	0.00028236	-1.6956	-0.00076006	-1.0657	-0.0004777	448.24683212828853	32.363	0.44682	32.363	32.204	32.651	0					16	8	3	0	0	0	0.028476	1	1428	1428		18.324	0	1	30896	+		58569	23391	48322	48367	64250	64250					0.029620960061379265
TYQDIQNTI	9	Unmodified	_TYQDIQNTI_					0	0	0		ENSG00000181222|ENST00000674977|POLR2A;nc|ENSG00000181222|P24928|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	ENSG00000181222|ENST00000674977|POLR2A	MULTI-MSMS	OvCa99_classI_Rep5	1	548.270751953125	2	548.269478	1094.5244	1.0493	0.00057533	1.361	0.00074618	2.4103	0.0013215	548.2701661184642	90.835	1.2902	90.835	90.504	91.794	0					59	31	2	0	0	0	0.066102	2	9775	9744;9775		109.48	24.318	1	9499600			58570	7923	48323	48368	64251;64252	64252					-0.019077590072356543
TYQEVAQKF	9	Unmodified	_TYQEVAQKF_					0	0	0		nc|ENSG00000093072|Q9NZK5-2|ADA2;ENSG00000093072|ENST00000399837|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	nc|ENSG00000093072|Q9NZK5-2|ADA2	MULTI-MSMS	OvCa99_classI_Rep5	1	557.2839965820312	2	557.282389	1112.55022	-0.63118	-0.00035175	0.18127	0.00010102	-0.44991	-0.00025073	557.2824184132563	69.896	2.3256	69.896	69.552	71.877	0					162	57	5	0	0	0	0.0070026	3	6707	6652;6676;6707		199.7	89.903	1	12497000			58571	1907	48324	48369	64253;64254;64255	64255					-0.001548647649542545
TYQRWQFTL	9	Unmodified	_TYQRWQFTL_					0	0	0		PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant;PRPF8|p.Q2065Hfs*8|1|0.04|ENSG00000174231|chr17:1653809-1653810|-/G|frameshift_variant;ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.Q1835Afs*4|1|0.07|ENSG00000174231|chr17:1658255-1658256|-/C|frameshift_variant;PRPF8|p.F1684Dfs*30|1|0.07|ENSG00000174231|chr17:1659445-1659446|-/AAGTCAGGAGATCGAGACCATC|frameshift_variant;PRPF8|p.L371Dfs*10|1|0.04|ENSG00000174231|chr17:1679787-1679788|-/ATATATACTGCAATCCATC|frameshift_variant	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	621.8181762695312	2	621.81693	1241.61931	1.0719	0.00066652	0.89269	0.00055509	1.9646	0.0012216	621.8173898923072	111.69	1.9997	111.69	111.29	113.29	0					130	43	5	0	0	0	0.0441	3	12700	12679;12700;12724		123.21	46.434	1	4630400			58572	7449	48325	48370	64256;64257;64258	64257					0.008162192546024016
TYQSITERI	9	Unmodified	_TYQSITERI_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF;EXOC4-TRUB2|1|fusion	ENSG00000131558|ENST00000253861|EXOC4;EXOC4-TRUB2|1|fusion	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	OvCa99_classI_Rep5	1	555.7936401367188	2	555.793121	1109.57169	2.767	0.0015379	-1.5736	-0.00087459	1.1934	0.00066327	555.7923300191742	75.569	0.58844	75.569	75.407	75.996	0					30	14	3	0	0	0	0.1149	1	7530	7530		93.143	26.714	1	1307400			58573	4075;14316	48326	48371	64259	64259					0.021285202637500333
TYQSITERI	9	Unmodified	_TYQSITERI_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4;nc|ENSG00000131558|Q96A65-2|EXOC4;ENST00000462055.5_1_7:132937857-133164897:+|nuORF;ENST00000486013.5_1_7:132937857-133314895:+|nuORF;EXOC4-TRUB2|1|fusion	ENSG00000131558|ENST00000253861|EXOC4;EXOC4-TRUB2|1|fusion	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	555.793121	1109.57169	-1.2439	-0.00069135	4.1563	0.0023101	2.9124	0.0016187	555.7948636597563	77.663	0.70317	75.31	74.995	75.698	-2.3527	-0.12943	0.0053595	NaN	93.143	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85317			58574	4075;14316	48326	48371							0.021285202637500333
TYQWNIPE	8	Unmodified	_TYQWNIPE_					0	0	0		nc|ENSG00000089472|Q9BQS7-3|HEPH;nc|ENSG00000089472|Q9BQS7-2|HEPH;ENSG00000089472|ENST00000343002|HEPH;nc|ENSG00000089472|Q9BQS7-4|HEPH	nc|ENSG00000089472|Q9BQS7-3|HEPH	nc|ENSG00000089472|Q9BQS7-3|HEPH	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7754516601562	2	525.748182	1049.48181	1.4692	0.00077241	0.94603	0.00049738	2.4152	0.0012698	525.7485045355083	98.201	0.37808	98.201	97.912	98.29	0					14	8	2	0	0	0	0.028476	1	10772	10772		15.642	0	1	157310			58575	14913	48327	48372	64260	64260					-0.040951093448029496
TYRNVMEQF	9	Unmodified	_TYRNVMEQF_					0	0	0		ENSG00000006453|ENST00000005260|BAIAP2L1;ENST00000462558.5_1_7:97937677-98030347:-|nuORF	ENSG00000006453|ENST00000005260|BAIAP2L1	ENSG00000006453|ENST00000005260|BAIAP2L1	MULTI-MSMS	OvCa99_classI_Rep5	1	594.2796020507812	2	594.279323	1186.54409	2.2148	0.0013162	-0.25544	-0.0001518	1.9594	0.0011644	594.2789115587465	85.737	0.84944	85.737	85.462	86.311	0					42	20	3	0	0	0	0.34132	1	9012	9012		58.23	5.2932	1	1108600			58576	877	48328	48373	64261	64261					-0.041717062681300376
TYSKKHFRI	9	Unmodified	_TYSKKHFRI_					0	0	0		nc|ENSG00000183765|O96017-6|CHEK2;nc|ENSG00000183765|O96017-5|CHEK2;nc|ENSG00000183765|O96017-2|CHEK2;nc|ENSG00000183765|O96017-8|CHEK2;nc|ENSG00000183765|O96017-7|CHEK2;nc|ENSG00000183765|O96017-12|CHEK2;ENSG00000183765|ENST00000404276|CHEK2;nc|ENSG00000183765|O96017-9|CHEK2	nc|ENSG00000183765|O96017-6|CHEK2	nc|ENSG00000183765|O96017-6|CHEK2	MULTI-MSMS	OvCa99_classI_Rep5	1	590.3355712890625	2	590.33529	1178.65603	-1.033	-0.00060979	0.88509	0.0005225	-0.14786	-8.729E-05	590.335585619461	34.407	0.84351	34.407	34.161	35.004	0					36	17	3	0	0	0	0.38969	1	1663	1663		52.937	20.124	1	446510			58577	8104	48329	48374	64262	64262					0.0738451587117197
TYSLTILDVKI	11	Unmodified	_TYSLTILDVKI_					0	0	0			REV__ENSG00000166260|ENST00000299335|COX11	REV__ENSG00000166260|ENST00000299335|COX11	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3692626953125	2	633.371204	1264.72785	-4.5141	-0.0028591	1.3189	0.00083537	-3.1952	-0.0020238	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.70761	1	15619	15619		27.047	0.3544	1	369460	+		58578	21170	48330	48375	64263	64263					0.10607965714393686
TYSPALNKMF	10	Oxidation (M)	_TYSPALNKM(Oxidation (M))F_		TYSPALNKM(1)F		TYSPALNKM(75)F	0	0	1		ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-4|TP53;TP53|p.R273Lfs*72|1|0.81|ENSG00000141510|chr17:7673802-7673802|C/-|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;TP53|p.N288Kfs*18|1|0.7|ENSG00000141510|chr17:7673756-7673757|-/T|frameshift_variant;nc|ENSG00000141510|P04637-6|TP53;TP53|p.P316Sfs*21|1|0.91|ENSG00000141510|chr17:7673582-7673583|-/A|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;TP53|p.E343Gfs*2|1|0.53|ENSG00000141510|chr17:7670681-7670681|T/-|frameshift_variant;TP53|p.C277Vfs*68|1|0.58|ENSG00000141510|chr17:7673792-7673792|G/-|frameshift_variant;TP53|p.K320Rfs*25|1|0.82|ENSG00000141510|chr17:7673571-7673571|C/-|frameshift_variant;TP53|p.R333Vfs*12|1|0.81|ENSG00000141510|chr17:7670712-7670712|G/-|frameshift_variant;TP53|p.R342Efs*3|1|0.71|ENSG00000141510|chr17:7670685-7670685|G/-|frameshift_variant;TP53|p.T284Qfs*61|1|0.58|ENSG00000141510|chr17:7673770-7673770|T/-|frameshift_variant;TP53|p.V272Cfs*73|1|0.61|ENSG00000141510|chr17:7673806-7673806|C/-|frameshift_variant;TP53|p.R282Pfs*65|1|0.8|ENSG00000141510|chr17:7673775-7673776|-/CGGCG|frameshift_variant;nc|ENSG00000141510|P04637-3|TP53;TP53|p.M340Sfs*8|1|0.75|ENSG00000141510|chr17:7670690-7670691|-/TCAC|frameshift_variant;TP53|p.L348Wfs*22|1|0.63|ENSG00000141510|chr17:7670666-7670666|A/-|frameshift_variant;TP53|p.N345Mfs*25|1|0.68|ENSG00000141510|chr17:7670677-7670677|C/-|frameshift_variant;TP53|p.F338Lfs*7|1|0.55|ENSG00000141510|chr17:7670695-7670695|G/-|frameshift_variant;TP53|p.N210Tfs*37|1|0.89|ENSG00000141510|chr17:7674902-7674902|T/-|frameshift_variant;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;TP53|p.H178Tfs*69|1|1.0|ENSG00000141510|chr17:7675080-7675080|G/-|frameshift_variant;TP53|p.C242Afs*5|2|0.84|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;TP53|p.V218Cfs*29|1|0.71|ENSG00000141510|chr17:7674879-7674879|C/-|frameshift_variant;TP53|p.C141Afs*29|2|0.6|ENSG00000141510|chr17:7675192-7675192|G/-|frameshift_variant;TP53|p.Q167Tfs*14|1|0.69|ENSG00000141510|chr17:7675113-7675114|-/T|frameshift_variant;TP53|p.Q144Lfs*5|1|0.58|ENSG00000141510|chr17:7675181-7675182|-/A|frameshift_variant;TP53|p.Q144Afs*16|1|0.53|ENSG00000141510|chr17:7675152-7675182|CGGGCGGGGGTGTGGAATCAACCCACAGCTG/-|frameshift_variant;TP53|p.T150Afs*16|1|0.7|ENSG00000141510|chr17:7675152-7675164|CGGGCGGGGGTGT/-|frameshift_variant;TP53|p.Q192Sfs*55|1|0.96|ENSG00000141510|chr17:7674957-7674957|G/-|frameshift_variant;TP53|p.N239*|1|0.81|ENSG00000141510|chr17:7674248-7674249|-/A|frameshift_variant;TP53|p.P152Rfs*18|1|0.42|ENSG00000141510|chr17:7675157-7675157|G/-|frameshift_variant;TP53|p.Y163Lfs*18|1|0.43|ENSG00000141510|chr17:7675125-7675126|-/G|frameshift_variant;TP53|p.S149Ffs*32|1|0.88|ENSG00000141510|chr17:7675166-7675167|-/A|frameshift_variant;TP53|p.I195Nfs*14|1|0.72|ENSG00000141510|chr17:7674947-7674948|-/T|frameshift_variant;TP53|p.R209Hfs*5|1|0.75|ENSG00000141510|chr17:7674902-7674906|TTTCT/-|frameshift_variant;TP53|p.T140Mfs*28|1|0.79|ENSG00000141510|chr17:7675187-7675193|GGGCAGG/-|frameshift_variant;TP53|p.P223*|1|0.76|ENSG00000141510|chr17:7674864-7674865|GC/-|frameshift_variant;TP53|p.D228*|2|0.86|ENSG00000141510|chr17:7674281-7674282|-/A|frameshift_variant;TP53|p.C135Y|1|0.47|ENSG00000141510|chr17:7675208-7675208|C/T|missense_variant;TP53|p.L330Ffs*15|1|0.51|ENSG00000141510|chr17:7673540-7673540|G/-|frameshift_variant	ENSG00000141510|ENST00000269305|TP53;TP53|p.L330Ffs*15|1|0.51|ENSG00000141510|chr17:7673540-7673540|G/-|frameshift_variant	ENSG00000141510|ENST00000269305|TP53	MULTI-MSMS	OvCa99_classI_Rep5	1	594.2918701171875	2	594.291899	1186.56925	2.1573	0.0012821	0.060254	3.5808E-05	2.2176	0.0013179	594.2917970470467	78.187	0.5327	78.187	77.924	78.457	0					41	12	4	0	0	0	0.34811	1	7916	7916		75.043	23.516	1	2056500			58579	4919;32977	48331	48376	64264	64264		157			-0.016576514655525898
TYSPALNKMF	10	Oxidation (M)	_TYSPALNKM(Oxidation (M))F_		TYSPALNKM(1)F		TYSPALNKM(110)F	0	0	1		ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-4|TP53;TP53|p.R273Lfs*72|1|0.81|ENSG00000141510|chr17:7673802-7673802|C/-|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;TP53|p.N288Kfs*18|1|0.7|ENSG00000141510|chr17:7673756-7673757|-/T|frameshift_variant;nc|ENSG00000141510|P04637-6|TP53;TP53|p.P316Sfs*21|1|0.91|ENSG00000141510|chr17:7673582-7673583|-/A|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;TP53|p.E343Gfs*2|1|0.53|ENSG00000141510|chr17:7670681-7670681|T/-|frameshift_variant;TP53|p.C277Vfs*68|1|0.58|ENSG00000141510|chr17:7673792-7673792|G/-|frameshift_variant;TP53|p.K320Rfs*25|1|0.82|ENSG00000141510|chr17:7673571-7673571|C/-|frameshift_variant;TP53|p.R333Vfs*12|1|0.81|ENSG00000141510|chr17:7670712-7670712|G/-|frameshift_variant;TP53|p.R342Efs*3|1|0.71|ENSG00000141510|chr17:7670685-7670685|G/-|frameshift_variant;TP53|p.T284Qfs*61|1|0.58|ENSG00000141510|chr17:7673770-7673770|T/-|frameshift_variant;TP53|p.V272Cfs*73|1|0.61|ENSG00000141510|chr17:7673806-7673806|C/-|frameshift_variant;TP53|p.R282Pfs*65|1|0.8|ENSG00000141510|chr17:7673775-7673776|-/CGGCG|frameshift_variant;nc|ENSG00000141510|P04637-3|TP53;TP53|p.M340Sfs*8|1|0.75|ENSG00000141510|chr17:7670690-7670691|-/TCAC|frameshift_variant;TP53|p.L348Wfs*22|1|0.63|ENSG00000141510|chr17:7670666-7670666|A/-|frameshift_variant;TP53|p.N345Mfs*25|1|0.68|ENSG00000141510|chr17:7670677-7670677|C/-|frameshift_variant;TP53|p.F338Lfs*7|1|0.55|ENSG00000141510|chr17:7670695-7670695|G/-|frameshift_variant;TP53|p.N210Tfs*37|1|0.89|ENSG00000141510|chr17:7674902-7674902|T/-|frameshift_variant;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;TP53|p.H178Tfs*69|1|1.0|ENSG00000141510|chr17:7675080-7675080|G/-|frameshift_variant;TP53|p.C242Afs*5|2|0.84|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;TP53|p.V218Cfs*29|1|0.71|ENSG00000141510|chr17:7674879-7674879|C/-|frameshift_variant;TP53|p.C141Afs*29|2|0.6|ENSG00000141510|chr17:7675192-7675192|G/-|frameshift_variant;TP53|p.Q167Tfs*14|1|0.69|ENSG00000141510|chr17:7675113-7675114|-/T|frameshift_variant;TP53|p.Q144Lfs*5|1|0.58|ENSG00000141510|chr17:7675181-7675182|-/A|frameshift_variant;TP53|p.Q144Afs*16|1|0.53|ENSG00000141510|chr17:7675152-7675182|CGGGCGGGGGTGTGGAATCAACCCACAGCTG/-|frameshift_variant;TP53|p.T150Afs*16|1|0.7|ENSG00000141510|chr17:7675152-7675164|CGGGCGGGGGTGT/-|frameshift_variant;TP53|p.Q192Sfs*55|1|0.96|ENSG00000141510|chr17:7674957-7674957|G/-|frameshift_variant;TP53|p.N239*|1|0.81|ENSG00000141510|chr17:7674248-7674249|-/A|frameshift_variant;TP53|p.P152Rfs*18|1|0.42|ENSG00000141510|chr17:7675157-7675157|G/-|frameshift_variant;TP53|p.Y163Lfs*18|1|0.43|ENSG00000141510|chr17:7675125-7675126|-/G|frameshift_variant;TP53|p.S149Ffs*32|1|0.88|ENSG00000141510|chr17:7675166-7675167|-/A|frameshift_variant;TP53|p.I195Nfs*14|1|0.72|ENSG00000141510|chr17:7674947-7674948|-/T|frameshift_variant;TP53|p.R209Hfs*5|1|0.75|ENSG00000141510|chr17:7674902-7674906|TTTCT/-|frameshift_variant;TP53|p.T140Mfs*28|1|0.79|ENSG00000141510|chr17:7675187-7675193|GGGCAGG/-|frameshift_variant;TP53|p.P223*|1|0.76|ENSG00000141510|chr17:7674864-7674865|GC/-|frameshift_variant;TP53|p.D228*|2|0.86|ENSG00000141510|chr17:7674281-7674282|-/A|frameshift_variant;TP53|p.C135Y|1|0.47|ENSG00000141510|chr17:7675208-7675208|C/T|missense_variant;TP53|p.L330Ffs*15|1|0.51|ENSG00000141510|chr17:7673540-7673540|G/-|frameshift_variant	ENSG00000141510|ENST00000269305|TP53;TP53|p.L330Ffs*15|1|0.51|ENSG00000141510|chr17:7673540-7673540|G/-|frameshift_variant	ENSG00000141510|ENST00000269305|TP53	MULTI-MSMS	OvCa99_classI_Rep5	1	594.2947998046875	2	594.291899	1186.56925	1.9978	0.0011873	0.46383	0.00027565	2.4617	0.0014629	594.2920206182376	78.641	0.78705	78.641	78.415	79.202	0					43	18	3	0	0	0	0.12609	1	7976	7976		107.01	48.778	1	2844400			58580	4919;32977	48331	48376	64265	64265		157			-0.016576514655525898
TYSPALNKMF	10	Oxidation (M)	_TYSPALNKM(Oxidation (M))F_					0	0	1		ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-4|TP53;TP53|p.R273Lfs*72|1|0.81|ENSG00000141510|chr17:7673802-7673802|C/-|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;TP53|p.N288Kfs*18|1|0.7|ENSG00000141510|chr17:7673756-7673757|-/T|frameshift_variant;nc|ENSG00000141510|P04637-6|TP53;TP53|p.P316Sfs*21|1|0.91|ENSG00000141510|chr17:7673582-7673583|-/A|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;TP53|p.E343Gfs*2|1|0.53|ENSG00000141510|chr17:7670681-7670681|T/-|frameshift_variant;TP53|p.C277Vfs*68|1|0.58|ENSG00000141510|chr17:7673792-7673792|G/-|frameshift_variant;TP53|p.K320Rfs*25|1|0.82|ENSG00000141510|chr17:7673571-7673571|C/-|frameshift_variant;TP53|p.R333Vfs*12|1|0.81|ENSG00000141510|chr17:7670712-7670712|G/-|frameshift_variant;TP53|p.R342Efs*3|1|0.71|ENSG00000141510|chr17:7670685-7670685|G/-|frameshift_variant;TP53|p.T284Qfs*61|1|0.58|ENSG00000141510|chr17:7673770-7673770|T/-|frameshift_variant;TP53|p.V272Cfs*73|1|0.61|ENSG00000141510|chr17:7673806-7673806|C/-|frameshift_variant;TP53|p.R282Pfs*65|1|0.8|ENSG00000141510|chr17:7673775-7673776|-/CGGCG|frameshift_variant;nc|ENSG00000141510|P04637-3|TP53;TP53|p.M340Sfs*8|1|0.75|ENSG00000141510|chr17:7670690-7670691|-/TCAC|frameshift_variant;TP53|p.L348Wfs*22|1|0.63|ENSG00000141510|chr17:7670666-7670666|A/-|frameshift_variant;TP53|p.N345Mfs*25|1|0.68|ENSG00000141510|chr17:7670677-7670677|C/-|frameshift_variant;TP53|p.F338Lfs*7|1|0.55|ENSG00000141510|chr17:7670695-7670695|G/-|frameshift_variant;TP53|p.N210Tfs*37|1|0.89|ENSG00000141510|chr17:7674902-7674902|T/-|frameshift_variant;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;TP53|p.H178Tfs*69|1|1.0|ENSG00000141510|chr17:7675080-7675080|G/-|frameshift_variant;TP53|p.C242Afs*5|2|0.84|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;TP53|p.V218Cfs*29|1|0.71|ENSG00000141510|chr17:7674879-7674879|C/-|frameshift_variant;TP53|p.C141Afs*29|2|0.6|ENSG00000141510|chr17:7675192-7675192|G/-|frameshift_variant;TP53|p.Q167Tfs*14|1|0.69|ENSG00000141510|chr17:7675113-7675114|-/T|frameshift_variant;TP53|p.Q144Lfs*5|1|0.58|ENSG00000141510|chr17:7675181-7675182|-/A|frameshift_variant;TP53|p.Q144Afs*16|1|0.53|ENSG00000141510|chr17:7675152-7675182|CGGGCGGGGGTGTGGAATCAACCCACAGCTG/-|frameshift_variant;TP53|p.T150Afs*16|1|0.7|ENSG00000141510|chr17:7675152-7675164|CGGGCGGGGGTGT/-|frameshift_variant;TP53|p.Q192Sfs*55|1|0.96|ENSG00000141510|chr17:7674957-7674957|G/-|frameshift_variant;TP53|p.N239*|1|0.81|ENSG00000141510|chr17:7674248-7674249|-/A|frameshift_variant;TP53|p.P152Rfs*18|1|0.42|ENSG00000141510|chr17:7675157-7675157|G/-|frameshift_variant;TP53|p.Y163Lfs*18|1|0.43|ENSG00000141510|chr17:7675125-7675126|-/G|frameshift_variant;TP53|p.S149Ffs*32|1|0.88|ENSG00000141510|chr17:7675166-7675167|-/A|frameshift_variant;TP53|p.I195Nfs*14|1|0.72|ENSG00000141510|chr17:7674947-7674948|-/T|frameshift_variant;TP53|p.R209Hfs*5|1|0.75|ENSG00000141510|chr17:7674902-7674906|TTTCT/-|frameshift_variant;TP53|p.T140Mfs*28|1|0.79|ENSG00000141510|chr17:7675187-7675193|GGGCAGG/-|frameshift_variant;TP53|p.P223*|1|0.76|ENSG00000141510|chr17:7674864-7674865|GC/-|frameshift_variant;TP53|p.D228*|2|0.86|ENSG00000141510|chr17:7674281-7674282|-/A|frameshift_variant;TP53|p.C135Y|1|0.47|ENSG00000141510|chr17:7675208-7675208|C/T|missense_variant;TP53|p.L330Ffs*15|1|0.51|ENSG00000141510|chr17:7673540-7673540|G/-|frameshift_variant	ENSG00000141510|ENST00000269305|TP53;TP53|p.L330Ffs*15|1|0.51|ENSG00000141510|chr17:7673540-7673540|G/-|frameshift_variant	ENSG00000141510|ENST00000269305|TP53	MULTI-MATCH	OvCa9_classI_Rep2	2		2	594.291899	1186.56925	-0.16243	-9.6534E-05	5.6474	0.0033562	5.4849	0.0032597	594.7967611811995	80.256	0.34915	78.561	78.419	78.769	-1.6951	-0.039881	0.0058981	NaN	107.01	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6695.6			58581	4919;32977	48331	48376				157			-0.016576514655525898
TYSPALNKMF	10	Unmodified	_TYSPALNKMF_					0	0	0		ENSG00000141510|ENST00000269305|TP53;nc|ENSG00000141510|P04637-4|TP53;TP53|p.R273Lfs*72|1|0.81|ENSG00000141510|chr17:7673802-7673802|C/-|frameshift_variant;nc|ENSG00000141510|P04637-5|TP53;TP53|p.N288Kfs*18|1|0.7|ENSG00000141510|chr17:7673756-7673757|-/T|frameshift_variant;nc|ENSG00000141510|P04637-6|TP53;TP53|p.P316Sfs*21|1|0.91|ENSG00000141510|chr17:7673582-7673583|-/A|frameshift_variant;nc|ENSG00000141510|P04637-2|TP53;TP53|p.E343Gfs*2|1|0.53|ENSG00000141510|chr17:7670681-7670681|T/-|frameshift_variant;TP53|p.C277Vfs*68|1|0.58|ENSG00000141510|chr17:7673792-7673792|G/-|frameshift_variant;TP53|p.K320Rfs*25|1|0.82|ENSG00000141510|chr17:7673571-7673571|C/-|frameshift_variant;TP53|p.R333Vfs*12|1|0.81|ENSG00000141510|chr17:7670712-7670712|G/-|frameshift_variant;TP53|p.R342Efs*3|1|0.71|ENSG00000141510|chr17:7670685-7670685|G/-|frameshift_variant;TP53|p.T284Qfs*61|1|0.58|ENSG00000141510|chr17:7673770-7673770|T/-|frameshift_variant;TP53|p.V272Cfs*73|1|0.61|ENSG00000141510|chr17:7673806-7673806|C/-|frameshift_variant;TP53|p.R282Pfs*65|1|0.8|ENSG00000141510|chr17:7673775-7673776|-/CGGCG|frameshift_variant;nc|ENSG00000141510|P04637-3|TP53;TP53|p.M340Sfs*8|1|0.75|ENSG00000141510|chr17:7670690-7670691|-/TCAC|frameshift_variant;TP53|p.L348Wfs*22|1|0.63|ENSG00000141510|chr17:7670666-7670666|A/-|frameshift_variant;TP53|p.N345Mfs*25|1|0.68|ENSG00000141510|chr17:7670677-7670677|C/-|frameshift_variant;TP53|p.F338Lfs*7|1|0.55|ENSG00000141510|chr17:7670695-7670695|G/-|frameshift_variant;TP53|p.N210Tfs*37|1|0.89|ENSG00000141510|chr17:7674902-7674902|T/-|frameshift_variant;ENST00000505014.5_1_17:7578140-7579834:-|nuORF;TP53|p.H178Tfs*69|1|1.0|ENSG00000141510|chr17:7675080-7675080|G/-|frameshift_variant;TP53|p.C242Afs*5|2|0.84|ENSG00000141510|chr17:7674240-7674240|G/-|frameshift_variant;TP53|p.V218Cfs*29|1|0.71|ENSG00000141510|chr17:7674879-7674879|C/-|frameshift_variant;TP53|p.C141Afs*29|2|0.6|ENSG00000141510|chr17:7675192-7675192|G/-|frameshift_variant;TP53|p.Q167Tfs*14|1|0.69|ENSG00000141510|chr17:7675113-7675114|-/T|frameshift_variant;TP53|p.Q144Lfs*5|1|0.58|ENSG00000141510|chr17:7675181-7675182|-/A|frameshift_variant;TP53|p.Q144Afs*16|1|0.53|ENSG00000141510|chr17:7675152-7675182|CGGGCGGGGGTGTGGAATCAACCCACAGCTG/-|frameshift_variant;TP53|p.T150Afs*16|1|0.7|ENSG00000141510|chr17:7675152-7675164|CGGGCGGGGGTGT/-|frameshift_variant;TP53|p.Q192Sfs*55|1|0.96|ENSG00000141510|chr17:7674957-7674957|G/-|frameshift_variant;TP53|p.N239*|1|0.81|ENSG00000141510|chr17:7674248-7674249|-/A|frameshift_variant;TP53|p.P152Rfs*18|1|0.42|ENSG00000141510|chr17:7675157-7675157|G/-|frameshift_variant;TP53|p.Y163Lfs*18|1|0.43|ENSG00000141510|chr17:7675125-7675126|-/G|frameshift_variant;TP53|p.S149Ffs*32|1|0.88|ENSG00000141510|chr17:7675166-7675167|-/A|frameshift_variant;TP53|p.I195Nfs*14|1|0.72|ENSG00000141510|chr17:7674947-7674948|-/T|frameshift_variant;TP53|p.R209Hfs*5|1|0.75|ENSG00000141510|chr17:7674902-7674906|TTTCT/-|frameshift_variant;TP53|p.T140Mfs*28|1|0.79|ENSG00000141510|chr17:7675187-7675193|GGGCAGG/-|frameshift_variant;TP53|p.P223*|1|0.76|ENSG00000141510|chr17:7674864-7674865|GC/-|frameshift_variant;TP53|p.D228*|2|0.86|ENSG00000141510|chr17:7674281-7674282|-/A|frameshift_variant;TP53|p.C135Y|1|0.47|ENSG00000141510|chr17:7675208-7675208|C/T|missense_variant;TP53|p.L330Ffs*15|1|0.51|ENSG00000141510|chr17:7673540-7673540|G/-|frameshift_variant	ENSG00000141510|ENST00000269305|TP53;TP53|p.L330Ffs*15|1|0.51|ENSG00000141510|chr17:7673540-7673540|G/-|frameshift_variant	ENSG00000141510|ENST00000269305|TP53	MULTI-MSMS	OvCa99_classI_Rep5	1	586.2957153320312	2	586.294442	1170.57433	2.6412	0.0015485	-0.61393	-0.00035994	2.0273	0.0011886	586.2941850862919	98.979	1.9812	98.979	98.506	100.49	0					103	47	5	0	0	0	4.5772E-07	3	10936	10906;10936;10967		204.62	116.87	1	71861000			58582	4919;32977	48331	48377	64266;64267;64268	64267					-0.004133476029210215
TYSSLLVI	8	Unmodified	_TYSSLLVI_					0	0	0			REV__tr|A0A7D6W1X6|A0A7D6W1X6_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04360PE=4SV=1	REV__tr|A0A7D6W1X6|A0A7D6W1X6_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04360PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	448.25897216796875	2	448.260394	894.506234	-2.462	-0.0011036	-0.24807	-0.0001112	-2.71	-0.0012148	448.2601337945915	142.71	1.2357	141.7	141.38	142.62	-1.0102					68	24	5	0	0	0	0.75915	1	11828	11828		20.482	0	1	329850	+		58583	31891	48332	48378	64269	64269					0.05476150808715374
TYSSQIRKL	9	Unmodified	_TYSSQIRKL_					0	0	0		nc|ENSG00000134369|Q8NEY1-7|NAV1;nc|ENSG00000134369|Q8NEY1-2|NAV1;nc|ENSG00000134369|Q8NEY1-6|NAV1;ENST00000469130.5_1_1:201751782-201763782:+|nuORF	nc|ENSG00000134369|Q8NEY1-7|NAV1	nc|ENSG00000134369|Q8NEY1-7|NAV1	MULTI-MSMS	OvCa99_classI_Rep5	1	548.312255859375	2	548.31148	1094.60841	-0.90646	-0.00049702	0.39009	0.00021389	-0.51636	-0.00028313	548.3115968054894	50.279	1.3471	50.279	49.944	51.291	0					98	30	5	0	0	0	0.13504	1	3815	3815		87.696	5.4559	1	4443600			58584	15028	48333	48379	64270	64270					0.06488816880346349
TYSVLKPLTSI	11	Unmodified	_TYSVLKPLTSI_					0	0	0		tr|A0A7D7A027|A0A7D7A027_9CLOTHDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22400PE=4SV=1	tr|A0A7D7A027|A0A7D7A027_9CLOTHDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22400PE=4SV=1	tr|A0A7D7A027|A0A7D7A027_9CLOTHDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22400PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3558959960938	2	611.358096	1220.70164	-3.1571	-0.0019301	-0.12375	-7.5658E-05	-3.2809	-0.0020058	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.70142	1	12930	12930		29.17	1.2878	1	666990			58585	35984	48334	48380	64271	64271					0.1001169654291516
TYSVLKPLTSI	11	Unmodified	_TYSVLKPLTSI_					0	0	0		tr|A0A7D7A027|A0A7D7A027_9CLOTHDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22400PE=4SV=1	tr|A0A7D7A027|A0A7D7A027_9CLOTHDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22400PE=4SV=1	tr|A0A7D7A027|A0A7D7A027_9CLOTHDdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22400PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3557739257812	2	611.358096	1220.70164	-2.725	-0.001666	-0.73961	-0.00045217	-3.4646	-0.0021181	611.3575283211214	150.83	4.6872	149.39	148.02	152.71	-1.4344					404	109	6	0	0	0	0.72324	1	15012	15012		21.686	1.689	1	435030			58586	35984	48334	48380	64272	64272					0.1001169654291516
TYSYSSKPT	9	Unmodified	_TYSYSSKPT_					0	0	0		nc|ENSG00000172403|Q9UMS6-4|SYNPO2;ENSG00000172403|ENST00000307142|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.269287109375	2	517.245472	1032.47639	-0.47792	-0.0002472	2.3078	0.0011937	1.8298	0.00094648	517.2465956555548	30.168	0.49795	30.168	29.935	30.433	0					11	9	2	0	0	0	0.027462	1	1127	1127		14.865	0	1	30129			58587	7296	48335	48381	64273	64273					-0.0385483292727713
TYTDRVFFL	9	Unmodified	_TYTDRVFFL_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF;TUBGCP6-PLXNB2|1|fusion	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-MSMS	OvCa99_classI_Rep5	1	581.30224609375	2	581.300581	1160.58661	2.1098	0.0012265	-0.058698	-3.4121E-05	2.0511	0.0011923	581.3005520808222	121.36	2.5025	121.36	120.97	123.47	0					160	54	5	0	0	0	0.022645	5	13969	13945;13969;13993;14017;14044		143.89	69.632	1	9553200			58588	8628	48336	48382	64274;64275;64276;64277;64278	64275					0.012740121317847297
TYTDVTPRQF	10	Unmodified	_TYTDVTPRQF_					0	0	0		ENSG00000084090|ENST00000337288|STARD7;ENST00000462501.1_1_2:96858901-96861247:-|nuORF	ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	MULTI-MSMS	OvCa99_classI_Rep5	1	614.3056030273438	2	614.303852	1226.59315	1.7712	0.001088	0.25564	0.00015704	2.0268	0.0012451	614.3039482666868	78.768	1.1686	78.768	78.457	79.625	0					75	28	5	0	0	0	6.83E-06	2	8009	7981;8009		190.62	120.99	1	10891000			58589	1709	48337	48383	64279;64280	64280					-0.011080947075242875
TYTEFVPQI	9	Unmodified	_TYTEFVPQI_					0	0	0		ENST00000482108.1_2_7:94293788-94294991:+|nuORF;nc|ENSG00000242265|Q86TG7|PEG10;ENSG00000242265|ENST00000612748|PEG10;nc|ENSG00000242265|Q86TG7-4|PEG10	ENST00000482108.1_2_7:94293788-94294991:+|nuORF	ENST00000482108.1_2_7:94293788-94294991:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.3035888671875	2	549.279315	1096.54408	1.5956	0.00087644	-0.63453	-0.00034853	0.96109	0.00052791	549.2789726799508	129.49	0.74791	129.49	129.12	129.87	0					37	15	4	0	0	0	0.027426	1	15018	15018		63.306	0	1	139130			58590	9363	48338	48384	64281	64281					-0.0003338299648021348
TYTIAGGTNSV	11	Unmodified	_TYTIAGGTNSV_					0	0	0			REV__tr|A0A553SGB1|A0A553SGB1_NIACILPXTGcellwallanchordomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10515PE=3SV=1	REV__tr|A0A553SGB1|A0A553SGB1_NIACILPXTGcellwallanchordomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10515PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.7841796875	2	542.269478	1082.5244	1.2362	0.00067034	-1.917	-0.0010395	-0.68083	-0.00036919	542.7706676885479	90.165	0.3472	88.863	88.68	89.028	-1.302					9	6	2	0	0	0	0.025541	1	7965	7965		70.816	9.8443	1	9140.2	+		58591	29680	48339	48385	64282	64282					-0.013557590072423409
TYTLRVFEL	9	Unmodified	_TYTLRVFEL_					0	0	0		nc|ENSG00000081237|P08575-4|PTPRC;nc|ENSG00000081237|P08575-9|PTPRC;nc|ENSG00000081237|P08575-10|PTPRC;nc|ENSG00000081237|P08575-8|PTPRC;nc|ENSG00000081237|P08575-7|PTPRC;nc|ENSG00000081237|P08575-5|PTPRC;nc|ENSG00000081237|P08575-6|PTPRC;ENSG00000081237|ENST00000442510|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	nc|ENSG00000081237|P08575-4|PTPRC	MULTI-MSMS	OvCa99_classI_Rep5	1	571.3172607421875	2	571.316232	1140.61791	0.92498	0.00052846	1.2132	0.00069311	2.1382	0.0012216	571.3170200258664	123.81	1.1015	123.81	123.14	124.24	0					48	23	3	0	0	0	0.18887	2	14296	14269;14296		78.264	26.928	1	584040			58592	1657	48340	48386	64283;64284	64284					0.053225851658453394
TYTSNLVRL	9	Unmodified	_TYTSNLVRL_					0	0	0		nc|ENSG00000116138|Q9Y2G8-2|DNAJC16;ENSG00000116138|ENST00000375847|DNAJC16;ENST00000475133.5_1_1:15892828-15894669:+|nuORF	nc|ENSG00000116138|Q9Y2G8-2|DNAJC16	nc|ENSG00000116138|Q9Y2G8-2|DNAJC16	MULTI-MSMS	OvCa99_classI_Rep5	1	533.80078125	2	533.798206	1065.58186	2.5692	0.0013714	-0.062556	-3.3392E-05	2.5066	0.001338	533.7981290594075	89.169	1.0049	89.169	88.843	89.848	0					47	24	3	0	0	0	0.48047	1	9512	9512		44.377	10.205	1	2258800			58593	3158	48341	48387	64285	64285					0.051691279890064834
TYTSYLDKF	9	Unmodified	_TYTSYLDKF_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	MULTI-MSMS	OvCa99_classI_Rep5	1	569.2774047851562	2	569.276772	1136.53899	2.5225	0.001436	-0.040951	-2.3312E-05	2.4816	0.0014127	569.2765051094765	98.817	0.89509	98.817	98.552	99.447	0					62	21	5	0	0	0	0.029147	2	10891	10891;10921		136.27	62.013	1	5058700			58594	1411	48342	48388	64286;64287	64286					-0.023816868590984086
TYTSYLDKF	9	Unmodified	_TYTSYLDKF_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	569.276772	1136.53899	-1.2603	-0.00071744	0.92275	0.0005253	-0.33752	-0.00019214	569.7778098899086	99.755	0.14815	98.925	98.816	98.964	-0.83051	0.054057	0.0010623	NaN	136.27	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5279			58595	1411	48342	48388							-0.023816868590984086
TYTVAVKSVIL	11	Unmodified	_TYTVAVKSVIL_					0	0	0		ENSG00000172497|ENST00000307624|ACOT12	ENSG00000172497|ENST00000307624|ACOT12	ENSG00000172497|ENST00000307624|ACOT12	MULTI-MSMS	OvCa9_classI_Rep3	3	597.3583374023438	2	597.360639	1192.70673	-5.052	-0.0030179	1.7912	0.00107	-3.2607	-0.0019478	597.3615454958483	157.14	0.96848	155.97	155.65	156.62	-1.1707					64	22	4	0	0	0	0.72516	1	13534	13534		13.454	0	1	132000			58596	7300	48343	48389	64288	64288					0.11808000405517305
TYVDSSHTI	9	Unmodified	_TYVDSSHTI_					0	0	0		VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant;nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;VCAN|p.Q2143Kfs*20|1|0.07|ENSG00000038427|chr5:83539428-83539429|-/AAAAAGAAGAA|frameshift_variant;VCAN|p.G2239Afs*2|1|0.05|ENSG00000038427|chr5:83539715-83539715|A/-|frameshift_variant;nc|ENSG00000038427|P13611-3|VCAN	VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant	VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	511.7449035644531	2	511.743096	1021.47164	-0.52017	-0.00026619	0.039921	2.0429E-05	-0.48025	-0.00024576	511.7430306914372	59.804	0.66216	59.804	59.533	60.195	0					52	16	4	0	0	0	0.010619	1	5173	5173		166.78	70.592	1	3964000			58597	1099	48344	48390	64289	64289					-0.03823717070042676
TYVDWHFLL	9	Unmodified	_TYVDWHFLL_					0	0	0		ENSG00000131471|ENST00000308423|AOC3;nc|ENSG00000131471|Q16853-2|AOC3	ENSG00000131471|ENST00000308423|AOC3	ENSG00000131471|ENST00000308423|AOC3	MULTI-MSMS	OvCa99_classI_Rep5	1	597.3052368164062	2	597.303124	1192.5917	1.3875	0.00082876	0.61741	0.00036878	2.0049	0.0011975	597.3034059452169	145.95	1.9749	145.95	145.53	147.5	0					128	39	6	0	0	0	0.079296	2	17083	17059;17083		102.77	51.581	1	2443200			58598	4069	48345	48391	64290;64291	64291					0.0031031599437483237
TYVIYAHLL	9	Unmodified	_TYVIYAHLL_					0	0	0		ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	ENSG00000165338|ENST00000298068|HECTD2	MULTI-MSMS	OvCa99_classI_Rep5	1	546.8060302734375	2	546.808042	1091.60153	1.5905	0.00086972	-0.50385	-0.00027551	1.0867	0.00059421	546.8075270697968	116.84	1.0027	116.84	116.51	117.51	0					61	21	5	0	0	0	0.22913	1	13361	13361		71.378	8.0716	1	666940			58599	6553	48346	48392	64292	64292					0.059395039997752974
TYVKEIEVW	9	Unmodified	_TYVKEIEVW_					0	0	0		RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.T5031Rfs*29|1|0.06|ENSG00000173821|chr17:80389261-80389262|-/TCGG|frameshift_variant;RNF213|p.G5057Vfs*8|1|0.18|ENSG00000173821|chr17:80389340-80389340|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.N2986Tfs*32|1|0.9|ENSG00000173821|chr17:80347289-80347289|G/-|frameshift_variant;ENST00000559070.5_1_17:78261823-78310301:+|nuORF;nc|ENSG00000173821|Q63HN8-5|RNF213;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	583.80810546875	2	583.808239	1165.60193	2.6325	0.0015369	-0.29864	-0.00017435	2.3338	0.0013625	583.8079903781755	102.55	1.0522	102.55	102.21	103.26	0					58	24	3	0	0	0	0.2422	2	11431	11431;11461		69.628	14.851	1	1749700			58600	7416;32788	48347	48393	64293;64294	64293					0.025748789289536944
TYVLANGKSFN	11	Unmodified	_TYVLANGKSFN_					0	0	0			REV__tr|A0A553SQS0|A0A553SQS0_NIACISensordomain-containingdiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_07075PE=4SV=1	REV__tr|A0A553SQS0|A0A553SQS0_NIACISensordomain-containingdiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_07075PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	607.314208984375	2	607.31422	1212.61389	-1.2203	-0.00074109	0.97942	0.00059482	-0.24085	-0.00014627	607.314776519483	107.39	1.3422	105.51	105.17	106.51	-1.8785					88	26	5	0	0	0	0.56391	1	9791	9791		47.96	6.5329	1	1457500	+		58601	30651	48348	48394	64295	64295					0.016084956721442722
TYVNVIDFF	9	Unmodified	_TYVNVIDFF_					0	0	0			REV__tr|A0A553SI33|A0A553SI33_NIACICytochromedubiquinoloxidasesubunitIIOS=NialliacirculansOX=1397GN=cydBPE=3SV=1	REV__tr|A0A553SI33|A0A553SI33_NIACICytochromedubiquinoloxidasesubunitIIOS=NialliacirculansOX=1397GN=cydBPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	559.2827758789062	2	559.281857	1116.54916	1.895	0.0010598	0.017596	9.8411E-06	1.9125	0.0010697	559.28183521166	113.86	2.1525	113.86	113.57	115.73	0					119	46	5	0	0	0	0.16524	1	13004	13004		82.305	2.854	1	9382900	+		58602	29860	48349	48395	64296	64296					-0.004450791338513227
TYVRLSVSLL	10	Unmodified	_TYVRLSVSLL_					0	0	0		ADGRE3|p.G363R|1|0.19|ENSG00000131355|chr19:14641580-14641580|C/T|missense_variant	ADGRE3|p.G363R|1|0.19|ENSG00000131355|chr19:14641580-14641580|C/T|missense_variant	ADGRE3|p.G363R|1|0.19|ENSG00000131355|chr19:14641580-14641580|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8430786132812	2	575.845156	1149.67576	-1.5734	-0.00090602	-1.7064	-0.00098265	-3.2798	-0.0018887	575.8439449675558	145.55	4.7888	144.12	142.78	147.57	-1.4357					360	93	6	0	0	0	0.69073	1	14439	14439		31.53	2.3598	1	565210			58603	38	48350	48396	64297	64297					0.10690847091291289
TYVSGTLRF	9	Unmodified	_TYVSGTLRF_					0	0	0		ENSG00000134255|ENST00000357172|CEPT1	ENSG00000134255|ENST00000357172|CEPT1	ENSG00000134255|ENST00000357172|CEPT1	MULTI-MSMS	OvCa99_classI_Rep5	1	522.2810668945312	2	522.279649	1042.54475	1.5824	0.00082645	0.25812	0.00013481	1.8405	0.00096126	522.27974372886	91.398	1.6197	91.398	91.057	92.677	0					86	38	3	0	0	0	0.025955	3	9862	9833;9862;9918		139.97	60.519	1	16793000			58604	4272	48351	48397	64298;64299;64300	64299					0.02517456443251831
TYVTEVREL	9	Unmodified	_TYVTEVREL_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MSMS	OvCa99_classI_Rep5	1	555.2968139648438	2	555.295496	1108.57644	2.3558	0.0013082	0.18844	0.00010464	2.5442	0.0014128	555.29523723997	82.466	1.1937	82.466	82.141	83.335	0					72	27	4	0	0	0	0.023079	1	8543	8543		143.37	71.496	1	3462500			58605	3800	48352	48398	64301	64301					0.026494044065202615
TYVTEVREL	9	Unmodified	_TYVTEVREL_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	555.295496	1108.57644	-0.30459	-0.00016913	-0.48178	-0.00026753	-0.78637	-0.00043667	555.29489190338	84.276	0.36499	82.73	82.483	82.848	-1.5462	0.064009	-0.00067705	NaN	143.37	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20527			58606	3800	48352	48398							0.026494044065202615
TYVTEVREL	9	Unmodified	_TYVTEVREL_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	555.295496	1108.57644	-1.5038	-0.00083505	-0.069056	-3.8346E-05	-1.5729	-0.0008734	555.2953613739986	85.023	0.58946	82.802	82.299	82.888	-2.2204	0.13633	-0.00021868	NaN	143.37	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52120			58607	3800	48352	48398							0.026494044065202615
TYVTKTRLN	9	Unmodified	_TYVTKTRLN_					0	0	0		ENST00000544879.5_1_10:74870289-74879224:+|nuORF	ENST00000544879.5_1_10:74870289-74879224:+|nuORF	ENST00000544879.5_1_10:74870289-74879224:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	548.2968139648438	2	548.31148	1094.60841	-0.90646	-0.00049702	0.39009	0.00021389	-0.51636	-0.00028313	548.3115968054894	50.279	1.3471	50.279	49.944	51.291	0					98	30	5	0	0	0	0.55011	1	3847	3847		37.812	1.3648	1	4443600			58608	13513	48353	48399	64302	64302					0.06488816880346349
TYVYFTNEL	9	Unmodified	_TYVYFTNEL_					0	0	0		ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF;ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF;nc|ENSG00000121858|P50591-2|TNFSF10	ENST00000472804.1_1_3:172229350-172241222:-|nuORF	ENST00000472804.1_1_3:172229350-172241222:-|nuORF	MSMS	OvCa99_classI_Rep5	1	575.2781372070312	2	575.276772	1148.53899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.29	1	126.29	125.79	126.79	0								0	0	0	0.025443	1	14603	14603		124.08	56.586	1				58609	3502	48354	48400	64303	64303					-0.02933686859091722
TYVYFTNEL	9	Unmodified	_TYVYFTNEL_					0	0	0		ENST00000472804.1_1_3:172229350-172241222:-|nuORF;ENST00000494851.5_1_3:172226989-172241222:-|nuORF;ENSG00000121858|ENST00000241261|TNFSF10;ENST00000466777.1_1_3:172236192-172241222:-|nuORF;nc|ENSG00000121858|P50591-2|TNFSF10	ENST00000472804.1_1_3:172229350-172241222:-|nuORF	ENST00000472804.1_1_3:172229350-172241222:-|nuORF	MSMS	OvCa99_classI_Rep5	1	575.27880859375	2	575.276772	1148.53899	NaN	NaN	NaN	NaN	NaN	NaN	NaN	126.47	1	126.47	125.97	126.97	0								0	0	0	0.028307	1	14626	14626		90.601	35.825	1				58610	3502	48354	48400	64304	64304					-0.02933686859091722
TYYFVLSI	8	Unmodified	_TYYFVLSI_					0	0	0		nc|ENSG00000188992|Q6XZB0-4|LIPI;nc|ENSG00000188992|Q6XZB0-5|LIPI;ENSG00000188992|ENST00000681601|LIPI;nc|ENSG00000188992|Q6XZB0-2|LIPI;nc|ENSG00000188992|Q6XZB0-8|LIPI	nc|ENSG00000188992|Q6XZB0-4|LIPI	nc|ENSG00000188992|Q6XZB0-4|LIPI	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.8031921386719	2	503.268219	1004.52188	-0.50343	-0.00025336	2.3407	0.001178	1.8373	0.00092465	503.26975054487644	58.97	0.8989	55.578	55.3	56.199	-3.392					25	17	2	0	0	0	0.028476	1	3903	3903		35.201	5.3592	1	28529			58611	8523	48355	48401	64305	64305					0.01980437325778439
TYYLQTDN	8	Unmodified	_TYYLQTDN_					0	0	0		ENST00000594859.5_1_19:18723732-18728463:+|nuORF;ENST00000598660.1_1_19:18723732-18729158:+|nuORF;ENSG00000105696|ENST00000262817|TMEM59L	ENST00000594859.5_1_19:18723732-18728463:+|nuORF	ENST00000594859.5_1_19:18723732-18728463:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.3014831542969	2	509.229822	1016.44509	-0.71222	-0.00036268	-4.0887	-0.0020821	-4.8009	-0.0024448	509.2277989774781	64.33	0.32912	64.33	64.132	64.461	0					16	7	3	0	0	0	0.028476	1	5840	5840		37.159	9.2769	1	212820			58612	14170	48356	48402	64306	64306					-0.062474059613805366
TYYRVTHETID	11	Unmodified	_TYYRVTHETID_					0	0	0			REV__tr|A0A553SU64|A0A553SU64_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_06425PE=4SV=1	REV__tr|A0A553SU64|A0A553SU64_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_06425PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.2496337890625	3	466.561375	1396.66229	0.33047	0.00015418	3.5558	0.001659	3.8863	0.0018132	466.5628748043074	58.108	0.29434	58.108	57.859	58.153	0					10	6	2	0	0	0	0.026277	1	4907	4907		23.378	0.81632	1	90816	+		58613	31043	48357	48403	64307	64307					-0.020170554786318462
TYYYRRRHRHE	11	Unmodified	_TYYYRRRHRHE_					0	0	0		ENSG00000170464|ENST00000302060|DNAJC18;ENST00000507405.5_1_5:138755893-138773164:-|nuORF;DNAJC18|p.A290Lfs*10|1|0.08|ENSG00000170464|chr5:139420138-139420138|T/-|frameshift_variant	ENSG00000170464|ENST00000302060|DNAJC18	ENSG00000170464|ENST00000302060|DNAJC18	MULTI-SECPEP	OvCa9_classI_Rep3	3	546.300537109375	3	546.278306	1635.81309	-0.12086	-6.6026E-05	1.7375	0.00094916	1.6166	0.00088313	546.279434078925	71.984	1.1856	69.382	68.932	70.117	-2.6023					63	23	3	0	0	0	0.026488	1	3416	3416		10.104	0.45776	1	79694			58614	7105	48358	48404	64308	64308					0.020615687433974017
VAAAAREE	8	Unmodified	_VAAAAREE_					0	0	0		ENST00000323037.4_1_7:30324457-30324679:+|nuORF	ENST00000323037.4_1_7:30324457-30324679:+|nuORF	ENST00000323037.4_1_7:30324457-30324679:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.2264709472656	2	408.714142	815.413731	0.63779	0.00026067	2.7007	0.0011038	3.3385	0.0013645	408.71405927131383	38.29	0.37122	38.29	38.114	38.486	0					10	7	2	0	0	0	0.028476	1	2158	2158		29.842	0	1	16391			58615	10387	48359	48405	64309	64309					-0.001359342048090184
VAAAESHPL	9	Unmodified	_VAAAESHPL_					0	0	0		ENST00000489392.1_1_9:136216448-136216496:+|nuORF;ENST00000416120.1_1_6:64259201-64259360:-|nuORF	ENST00000489392.1_1_9:136216448-136216496:+|nuORF	ENST00000489392.1_1_9:136216448-136216496:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	447.7383728027344	2	447.737617	893.460681	0.65541	0.00029345	-0.39866	-0.0001785	0.25675	0.00011496	447.73729599169997	46.61	1.0959	46.61	46.369	47.465	0					55	24	4	0	0	0	0.085069	1	3301	3301		101.21	26.957	1	3521600			58616	11600	48360	48406	64310	64310					0.009689253463307068
VAAAPYGGPIA	11	Unmodified	_VAAAPYGGPIA_					0	0	0		nc|ENSG00000215305|Q9H269-2|VPS16;ENSG00000215305|ENST00000380445|VPS16	nc|ENSG00000215305|Q9H269-2|VPS16	nc|ENSG00000215305|Q9H269-2|VPS16	MULTI-MSMS	OvCa99_classI_Rep5	1	493.7701416015625	2	493.768917	985.523281	2.3013	0.0011363	1.6477	0.00081359	3.9491	0.0019499	493.7686979753511	95.996	0.79916	95.996	95.743	96.543	0					39	18	3	0	0	0	0.64499	1	10488	10488		40.573	2.7611	1	1239900			58617	9205	48361	48407	64311	64311					0.0299407141451411
VAAAVMTPLPG	11	Unmodified	_VAAAVMTPLPG_					0	0	0		nc|ENSG00000140995|Q6ZN54|DEF8	nc|ENSG00000140995|Q6ZN54|DEF8	nc|ENSG00000140995|Q6ZN54|DEF8	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.7893676757812	2	513.786253	1025.55795	-0.34711	-0.00017834	3.1782	0.0016329	2.8311	0.0014546	513.7878714786193	39.389	2.2851	36.463	35.948	38.233	-2.9264					123	44	5	0	0	0	0.64273	1	1581	1581		40.778	7.2626	1	2914100			58618	15061	48362	48408	64312	64312					0.04619571230955444
VAADDGLNLV	10	Unmodified	_VAADDGLNLV_					0	0	0			REV__tr|A0A7D6ZYR1|A0A7D6ZYR1_9CLOTIronABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03550PE=3SV=1	REV__tr|A0A7D6ZYR1|A0A7D6ZYR1_9CLOTIronABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03550PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	493.76068115234375	2	493.761289	985.508025	0.8033	0.00039664	-1.2682	-0.00062621	-0.46495	-0.00022957	493.76049372344386	132.63	1.2336	132.4	131.98	133.21	-0.22696					64	24	4	0	0	0	0.74374	1	13092	13092		25.574	0	1	306710	+		58619	32385	48363	48409	64313	64313					0.014691598266722394
VAAEIDAKNE	10	Unmodified	_VAAEIDAKNE_					0	0	0			REV__tr|A0A553SNV1|A0A553SNV1_NIACIBMPfamilyABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_25175PE=3SV=1	REV__tr|A0A553SNV1|A0A553SNV1_NIACIBMPfamilyABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_25175PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.2698974609375	2	530.269478	1058.5244	0.99478	0.0005275	-1.9658	-0.0010424	-0.97106	-0.00051492	530.2680849686909	137.83	0.6871	136.3	136.07	136.76	-1.5284					28	15	2	0	0	0	0.73378	1	13411	13411		26.693	2.4902	1	36612	+		58620	30458	48364	48410	64314	64314					-0.002517590072557141
VAAESGIIKVK	11	Unmodified	_VAAESGIIKVK_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	557.8473510742188	2	557.845156	1113.67576	2.8413	0.001585	-0.2616	-0.00014593	2.5797	0.0014391	557.8449224602508	86.278	0.84981	86.278	85.994	86.844	0					49	20	3	0	0	0	0.060105	1	9104	9104		109.48	9.6905	1	5928300			58621	13545	48365	48411	64315	64315					0.12346847091271229
VAAESGIIKVK	11	Unmodified	_VAAESGIIKVK_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	557.8453369140625	2	557.845156	1113.67576	2.1411	0.0011944	-2.8378	-0.0015831	-0.69676	-0.00038868	557.8434469672433	87.694	1.4738	86.263	85.94	87.414	-1.4311					85	29	4	0	0	0	0.092969	1	7656	7656		98.582	6.3431	1	624360			58622	13545	48365	48411	64316	64316					0.12346847091271229
VAAESGIIKVK	11	Unmodified	_VAAESGIIKVK_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.8455200195312	2	557.845156	1113.67576	-0.20864	-0.00011639	-0.31416	-0.00017526	-0.5228	-0.00029164	557.8448466771104	88.815	1.6405	86.213	85.882	87.523	-2.6027					83	32	5	0	0	0	0.19643	1	7616	7616		80.455	8.2114	1	751530			58623	13545	48365	48411	64317	64317					0.12346847091271229
VAAGSIALLS	10	Unmodified	_VAAGSIALLS_					0	0	0		sp|Q6SW94|VGLI_HCMVMUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL37PE=3SV=1;sp|P16778|VGLI_HCMVAUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL37PE=1SV=2	sp|Q6SW94|VGLI_HCMVMUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL37PE=3SV=1	sp|Q6SW94|VGLI_HCMVMUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL37PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.2221374511719	2	451.271293	900.528032	0.2499	0.00011277	-1.3029	-0.00058798	-1.053	-0.00047521	451.2706772861864	93.937	0.95888	91.43	91.212	92.171	-2.5072					36	19	3	0	0	0	0.026688	1	8266	8266		32.812	7.2384	1	112300			58624	32911	48366	48412	64318	64318					0.07378955557271638
VAAGSIALLS	10	Unmodified	_VAAGSIALLS_					0	0	0		sp|Q6SW94|VGLI_HCMVMUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL37PE=3SV=1;sp|P16778|VGLI_HCMVAUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL37PE=1SV=2	sp|Q6SW94|VGLI_HCMVMUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL37PE=3SV=1	sp|Q6SW94|VGLI_HCMVMUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL37PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	451.271293	900.528032	2.6293	0.0011865	-2.6762	-0.0012077	-0.046858	-2.1146E-05	451.269936269684	92.629	0.92516	91.461	91.129	92.054	-1.168	0.052776	-0.0015657	NaN	32.812	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93184			58625	32911	48366	48412							0.07378955557271638
VAAGSIALLS	10	Unmodified	_VAAGSIALLS_					0	0	0		sp|Q6SW94|VGLI_HCMVMUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL37PE=3SV=1;sp|P16778|VGLI_HCMVAUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL37PE=1SV=2	sp|Q6SW94|VGLI_HCMVMUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL37PE=3SV=1	sp|Q6SW94|VGLI_HCMVMUL37immediateearlyglycoproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL37PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	451.271293	900.528032	-1.137	-0.00051309	1.1056	0.00049891	-0.031431	-1.4184E-05	451.2716366382633	93.296	1.415	91.334	91.03	92.445	-1.9617	-0.074336	0.0018474	NaN	32.812	46	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143460			58626	32911	48366	48412							0.07378955557271638
VAAKKMKK	8	Unmodified	_VAAKKMKK_					0	0	0			REV__ENSG00000066279|ENST00000367409|ASPM	REV__ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.28411865234375	2	452.294048	902.573543	0.77441	0.00035026	1.8943	0.0008568	2.6688	0.0012071	452.2953406004017	47.42	0.29687	44.312	44.185	44.482	-3.1077					9	5	3	0	0	0	0.028476	1	2569	2569		46.766	18.512	1	32657	+		58627	16812	48367	48413	64319	64319					0.11835902538678056
VAAKRARK	8	Unmodified	_VAAKRARK_					0	0	0		tr|A0A553SP70|A0A553SP70_NIACIDNA-directedRNApolymerasesubunitomegaOS=NialliacirculansOX=1397GN=rpoZPE=3SV=1	tr|A0A553SP70|A0A553SP70_NIACIDNA-directedRNApolymerasesubunitomegaOS=NialliacirculansOX=1397GN=rpoZPE=3SV=1	tr|A0A553SP70|A0A553SP70_NIACIDNA-directedRNApolymerasesubunitomegaOS=NialliacirculansOX=1397GN=rpoZPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.27008056640625	2	450.29851	898.582468	0.50032	0.0002253	-3.1753	-0.0014298	-2.6749	-0.0012045	450.29811528149247	62.264	0.34368	58.806	58.618	58.962	-3.4577					9	6	2	0	0	0	0.028476	1	4322	4322		12.959	0.75233	1	11270			58628	34009	48368	48414	64320	64320					0.12912012219362623
VAALGITPAK	10	Unmodified	_VAALGITPAK_					0	0	0			REV__ENST00000564774.5_1_16:84212549-84214094:-|nuORF	REV__ENST00000564774.5_1_16:84212549-84214094:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	470.7956848144531	2	470.794935	939.575317	0.20993	9.8834E-05	-0.69896	-0.00032907	-0.48903	-0.00023024	470.79448322254706	79.584	1.8764	77.889	77.241	79.118	-1.6951					106	36	4	0	0	0	0.26627	1	6691	6691		84.916	18.486	1	702100	+		58629	17599	48369	48415	64321	64321					0.10311234828270699
VAALGITPAK	10	Unmodified	_VAALGITPAK_					0	0	0			REV__ENST00000564774.5_1_16:84212549-84214094:-|nuORF	REV__ENST00000564774.5_1_16:84212549-84214094:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.7961730957031	2	470.794935	939.575317	-0.080631	-3.7961E-05	-0.4788	-0.00022542	-0.55943	-0.00026338	470.7946553269519	80.301	1.9102	77.59	77.123	79.033	-2.7106					99	38	4	0	0	0	0.32926	3	6547	6547;6573;6587		77.318	3.4007	1	2410000	+		58630	17599	48369	48415	64322;64323;64324	64322					0.10311234828270699
VAALGITPAK	10	Unmodified	_VAALGITPAK_					0	0	0			REV__ENST00000564774.5_1_16:84212549-84214094:-|nuORF	REV__ENST00000564774.5_1_16:84212549-84214094:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	470.794935	939.575317	0.20993	9.8834E-05	-0.69896	-0.00032907	-0.48903	-0.00023024	470.79448322254706	79.584	1.8764	77.889	77.241	79.118	-1.6951	0.14903	-0.00011646	NaN	84.916	106	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	702100	+		58631	17599	48369	48415							0.10311234828270699
VAALMGKKT	9	Unmodified	_VAALMGKKT_					0	0	0			REV__tr|A0A553SP38|A0A553SP38_NIACIRibonucleaseHIIOS=NialliacirculansOX=1397GN=rnhBPE=3SV=1	REV__tr|A0A553SP38|A0A553SP38_NIACIRibonucleaseHIIOS=NialliacirculansOX=1397GN=rnhBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	459.7745666503906	2	459.775688	917.536823	-2.4241	-0.0011145	2.1864	0.0010053	-0.23766	-0.00010927	459.77660984110486	36.567	1.1832	33.858	33.647	34.83	-2.7097					59	23	4	0	0	0	0.50149	1	1597	1597		42.396	1.8235	1	232640	+		58632	30487	48370	48416	64325	64325					0.07475605922115847
VAALVQEKT	9	Unmodified	_VAALVQEKT_					0	0	0			REV__ENST00000479501.5_1_20:61926459-61943880:+|nuORF	REV__ENST00000479501.5_1_20:61926459-61943880:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	478.7931823730469	2	479.782025	957.549496	-0.57996	-0.00027826	0.35205	0.00016891	-0.22791	-0.00010935	479.7821324298492	82.26	2.0302	79.964	79.634	81.664	-2.2963					106	41	4	0	0	0	0.027448	1	4692	4692		44.117	6.9577	1	1620000	+		58633	17480	48371	48417	64326	64326					0.06902340586009359
VAAPAEQIS	9	Unmodified	_VAAPAEQIS_					0	0	0			REV__ENST00000527867.5_1_1:179853135-179857037:+|nuORF	REV__ENST00000527867.5_1_1:179853135-179857037:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	443.23870849609375	2	443.23745	884.460347	3.0443	0.0013494	-1.0041	-0.00044504	2.0403	0.00090433	443.2369017258248	85.105	0.70255	85.105	84.841	85.544	0					36	16	3	0	0	0	0.11171	1	8922	8922		94.006	11.701	1	1693400	+		58634	27160	48372	48418	64327	64327					0.013495056264787308
VAAPEPKKETE	11	Unmodified	_VAAPEPKKETE_					0	0	0		ENSG00000133226|ENST00000323848|SRRM1;nc|ENSG00000133226|Q8IYB3-2|SRRM1	ENSG00000133226|ENST00000323848|SRRM1	ENSG00000133226|ENST00000323848|SRRM1	MULTI-MSMS	OvCa99_classI_Rep5	1	400.2189636230469	3	400.215316	1197.62412	1.1484	0.0004596	-0.12825	-5.1328E-05	1.0201	0.00040827	400.21520208928615	44.759	0.80463	44.759	44.484	45.289	0					36	17	3	0	0	0	0.52842	1	3043	3043		44.639	0	1	1065400			58635	4213	48373	48419	64328	64328					0.033210586067070835
VAAPLGPLL	9	Unmodified	_VAAPLGPLL_					0	0	0		ENSG00000163516|ENST00000323348|ANKZF1;ENST00000463792.5_1_2:220099420-220100035:+|nuORF;ENST00000477479.5_1_2:220099420-220101164:+|nuORF	ENSG00000163516|ENST00000323348|ANKZF1;ENST00000463792.5_1_2:220099420-220100035:+|nuORF	ENSG00000163516|ENST00000323348|ANKZF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	425.775634765625	2	425.773471	849.53239	-0.54738	-0.00023306	3.7264	0.0015866	3.179	0.0013535	425.7749745888364	69.607	2.0379	66.126	65.811	67.849	-3.4812					126	41	5	0	0	0	0.68641	1	5251	5251		21.702	0	1	3927600			58636	6319;12234	48374	48420	64329	64329					0.10160464770854105
VAAPPPKNSF	10	Unmodified	_VAAPPPKNSF_					0	0	0		nc|ENSG00000165458|O15357-2|INPPL1;ENSG00000165458|ENST00000298229|INPPL1	nc|ENSG00000165458|O15357-2|INPPL1	nc|ENSG00000165458|O15357-2|INPPL1	MULTI-MSMS	OvCa99_classI_Rep5	1	514.2828979492188	2	514.282192	1026.54983	-0.30044	-0.00015451	-0.16104	-8.282E-05	-0.46148	-0.00023733	514.2820526803347	56.394	1.1647	56.394	55.973	57.138	0					71	27	3	0	0	0	0.42082	1	4698	4698		65.465	4.4934	1	4126000			58637	6562	48375	48421	64330	64330					0.037617603058379245
VAAPTHWMP	9	Unmodified	_VAAPTHWMP_					0	0	0			REV__ENST00000456357.6_1_7:97920663-97920753:+|nuORF	REV__ENST00000456357.6_1_7:97920663-97920753:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.3253479003906	2	505.249837	1008.48512	-0.32367	-0.00016353	-4.4739	-0.0022604	-4.7976	-0.002424	505.24772997810555	60.134	0.43522	60.134	59.879	60.314	0					16	10	2	0	0	0	0.027462	1	5249	5249		26.796	10.323	1	333730	+		58638	26029	48376	48422	64331	64331					-0.018781377717914438
VAAQRKGGF	9	Unmodified	_VAAQRKGGF_					0	0	0		ENST00000341247.8_1_12:50677206-50677239:-|nuORF	ENST00000341247.8_1_12:50677206-50677239:-|nuORF	ENST00000341247.8_1_12:50677206-50677239:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.26605224609375	2	467.266876	932.519199	0.056921	2.6597E-05	0.21509	0.0001005	0.27201	0.0001271	467.2668397699727	22.187	1.3509	20.848	20.321	21.672	-1.3386					61	30	3	0	0	0	0.59983	1	308	308		31.955	0	1	128670			58639	10565	48377	48423	64332	64332					0.05024026711475926
VAARSDKK	8	Unmodified	_VAARSDKK_					0	0	0		tr|A0A553SHF3|A0A553SHF3_NIACIATP-dependentzincmetalloproteaseFtsHOS=NialliacirculansOX=1397GN=ftsHPE=3SV=1	tr|A0A553SHF3|A0A553SHF3_NIACIATP-dependentzincmetalloproteaseFtsHOS=NialliacirculansOX=1397GN=ftsHPE=3SV=1	tr|A0A553SHF3|A0A553SHF3_NIACIATP-dependentzincmetalloproteaseFtsHOS=NialliacirculansOX=1397GN=ftsHPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	437.7626037597656	2	437.758884	873.503215	3.1055	0.0013595	3.8737	0.0016957	6.9792	0.0030552	437.76042264485415	110.63	1.1136	110.63	110.31	111.42	0					53	24	4	0	0	0	0.68714	1	12545	12545		45.952	5.3793	1	1263100			58640	33265	48378	48424	64333	64333					0.061403204745602125
VAATGGAG	8	Unmodified	_VAATGGAG_					0	0	0			REV__sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1	REV__sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	602.9120483398438	1	603.309666	602.30239	0.46714	0.00028183	-0.73564	-0.00044382	-0.2685	-0.00016199	603.3090970482223	58.317	1.1045	54.927	54.602	55.707	-3.3903					46	21	3	0	0	0	0.028476	1	3803	3803		14.664	0	1	399810	+		58641	29417	48379	48425	64334	64334					-0.014669488420963717
VAAWAWRRM	9	Unmodified	_VAAWAWRRM_					0	0	0			REV__ENSG00000184163|ENST00000330388|C1QTNF12	REV__ENSG00000184163|ENST00000330388|C1QTNF12	MULTI-MSMS	OvCa9_classI_Rep2	2	573.8045043945312	2	573.803103	1145.59165	0.92271	0.00052945	0.25143	0.00014427	1.1741	0.00067372	573.803123072616	28.582	0.45703	25.873	25.592	26.049	-2.7097					14	9	2	0	0	0	0.6959	1	589	589		19.36	3.7182	1	17979	+		58642	22407	48380	48426	64335	64335					0.02468037513381205
VADKKRVE	8	Unmodified	_VADKKRVE_					0	0	0			REV__ENST00000477250.1_1_13:36855391-36871856:-|nuORF	REV__ENST00000477250.1_1_13:36855391-36871856:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.7665710449219	2	472.779816	943.545079	0.3178	0.00015025	0.50311	0.00023786	0.82091	0.00038811	472.77983929483537	57.92	1.2419	57.92	57.65	58.892	0					56	29	3	0	0	0	0.028476	1	4892	4892		54.776	34.78	1	990090	+		58643	23460	48381	48427	64336	64336					0.07104876163089102
VADRLIKEA	9	Unmodified	_VADRLIKEA_					0	0	0			REV__ENSG00000165914|ENST00000328459|TTC7B	REV__ENSG00000165914|ENST00000328459|TTC7B	MULTI-MSMS	OvCa9_classI_Rep2	2	507.79998779296875	2	507.800749	1013.58694	-1.3545	-0.0006878	0.98637	0.00050088	-0.3681	-0.00018692	507.8011650052205	54.128	1.8434	51.314	50.529	52.372	-2.8139					84	36	4	0	0	0	0.24951	1	3727	3727		68.787	1.2932	1	436050	+		58644	21136	48382	48428	64337	64337					0.08069431851617992
VADRLIKEA	9	Unmodified	_VADRLIKEA_					0	0	0			REV__ENSG00000165914|ENST00000328459|TTC7B	REV__ENSG00000165914|ENST00000328459|TTC7B	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.8017272949219	2	507.800749	1013.58694	-1.2338	-0.00062655	0.78921	0.00040076	-0.44464	-0.00022579	507.8011244097221	54.456	2.4006	51.208	50.466	52.866	-3.2474					94	46	4	0	0	0	0.19758	1	3404	3404		76.774	0	1	1499800	+		58645	21136	48382	48428	64338	64338					0.08069431851617992
VADSPPNR	8	Unmodified	_VADSPPNR_					0	0	0			REV__MTHFD1-CASK|2|fusion	REV__MTHFD1-CASK|2|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	427.7597351074219	2	428.219591	854.42463	0.16716	7.1582E-05	-0.93329	-0.00039965	-0.76613	-0.00032807	428.2192663553801	63.595	0.35871	63.595	63.455	63.814	0					11	8	2	0	0	0	0.028476	1	5728	5728		68.485	29.679	1	237930	+		58646	28684	48383	48429	64339	64339					-0.00840531830533564
VADTRQAM	8	Unmodified	_VADTRQAM_					0	0	0			REV__ENSG00000197417|ENST00000225519|SHPK	REV__ENSG00000197417|ENST00000225519|SHPK	MULTI-MSMS	OvCa99_classI_Rep5	1	446.22119140625	2	446.221277	890.428001	-0.28111	-0.00012544	0.052727	2.3528E-05	-0.22839	-0.00010191	446.2212038641237	34.378	1.9582	34.378	34.161	36.119	0					65	41	4	0	0	0	0.42208	1	1648	1648		85.359	2.0723	1	1747700	+		58647	22921	48384	48430	64340	64340					-0.021596050481662132
VADTVARVL	9	Unmodified	_VADTVARVL_					0	0	0		ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	OvCa99_classI_Rep5	1	472.28326416015625	2	472.282192	942.549831	2.2856	0.0010795	-0.32513	-0.00015355	1.9605	0.00092592	472.28185743601097	78.42	0.86158	78.42	78.093	78.955	0					58	20	4	0	0	0	0.075543	2	7961	7933;7961		104.06	10.861	1	5616700			58648	5233	48385	48431	64341;64342	64342					0.0762576030585933
VAEAIARIRQR	11	Unmodified	_VAEAIARIRQR_					0	0	0		tr|A0A7D6VSH7|A0A7D6VSH7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22835PE=4SV=1	tr|A0A7D6VSH7|A0A7D6VSH7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22835PE=4SV=1	tr|A0A7D6VSH7|A0A7D6VSH7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22835PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8826293945312	2	641.888752	1281.76295	-5.3554	-0.0034376	-4.2627	-0.0027362	-9.6181	-0.0061737	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.72473	1	12961	12961		19.104	0	1	804890			58649	35026	48386	48432	64343	64343					0.1333406608553105
VAEDSRLIS	9	Unmodified	_VAEDSRLIS_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.754638671875	2	495.266739	988.518924	0.29156	0.0001444	-1.3031	-0.00064538	-1.0115	-0.00050098	495.2659294181387	66.774	0.8017	66.774	66.372	67.173	0					43	19	3	0	0	0	0.027462	1	6190	6190		21.96	0	1	5427300	+		58650	21477	48387	48433	64344	64344					0.024205622009503713
VAEDSRLIS	9	Unmodified	_VAEDSRLIS_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	495.266739	988.518924	-0.46232	-0.00022897	0.051457	2.5485E-05	-0.41087	-0.00020349	495.2666617976369	69.144	0.79765	66.523	66.118	66.915	-2.6203	-0.069436	0.00021697	NaN	15.642	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97503	+		58651	21477	48387	48433							0.024205622009503713
VAEENTRVL	9	Unmodified	_VAEENTRVL_					0	0	0		nc|ENSG00000156256|Q9Y5T5-3|USP16;nc|ENSG00000156256|Q9Y5T5-2|USP16;ENSG00000156256|ENST00000399976|USP16;nc|ENSG00000156256|Q9Y5T5-4|USP16;ENST00000485067.1_1_21:30426080-30426505:+|nuORF	nc|ENSG00000156256|Q9Y5T5-3|USP16	nc|ENSG00000156256|Q9Y5T5-3|USP16	MULTI-MSMS	OvCa99_classI_Rep5	1	515.781982421875	2	515.780013	1029.54547	-0.55341	-0.00028544	0.55221	0.00028482	-0.001194	-6.1585E-07	515.7801802251417	56.046	0.69377	56.046	55.804	56.498	0					36	16	3	0	0	0	0.1149	1	4615	4615		93.143	7.9824	1	3904300			58652	5829	48388	48434	64345	64345					0.03188251092274186
VAELASHEGW	10	Unmodified	_VAELASHEGW_					0	0	0		ENSG00000070182|ENST00000644917|SPTB;nc|ENSG00000070182|P11277-3|SPTB;nc|ENSG00000070182|P11277|SPTB	ENSG00000070182|ENST00000644917|SPTB	ENSG00000070182|ENST00000644917|SPTB	MULTI-MSMS	OvCa99_classI_Rep5	1	549.7633666992188	2	549.764363	1097.51417	0.74232	0.0004081	-2.4274	-0.0013345	-1.6851	-0.0009264	549.7629575946962	154.06	4.3631	154.06	151.88	156.24	0					128	91	2	0	0	0	0.65434	1	17914	17914		35.618	0	1	70978			58653	1421	48389	48435	64346	64346					-0.03068321941805152
VAELWKDV	8	Unmodified	_VAELWKDV_					0	0	0		nc|ENSG00000133026|P35580|MYH10;nc|ENSG00000133026|P35580-5|MYH10;nc|ENSG00000133026|P35580-2|MYH10	nc|ENSG00000133026|P35580|MYH10	nc|ENSG00000133026|P35580|MYH10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.94134521484375	2	480.263468	958.512382	-0.22408	-0.00010762	-4.0108	-0.0019262	-4.2348	-0.0020338	480.2614574114945	62.544	0.63391	59.086	58.864	59.498	-3.4577					22	12	2	0	0	0	0.028476	1	4395	4395		38.806	13.232	1	87131			58654	15021	48390	48436	64347	64347					0.031466690402339736
VAEQPAGGQL	10	Unmodified	_VAEQPAGGQL_					0	0	0			REV__ENSG00000176641|ENST00000312828|RNF152	REV__ENSG00000176641|ENST00000312828|RNF152	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.2549133300781	2	485.253631	968.49271	-0.35802	-0.00017373	0.071183	3.4542E-05	-0.28684	-0.00013919	485.25359607245366	62.791	1.4583	59.333	58.715	60.174	-3.4577					57	29	2	0	0	0	0.20801	1	4376	4376		93.195	5.499	1	1014200	+		58655	21961	48391	48437	64348	64348					0.007202930294738508
VAEQPAGGQL	10	Unmodified	_VAEQPAGGQL_					0	0	0			REV__ENSG00000176641|ENST00000312828|RNF152	REV__ENSG00000176641|ENST00000312828|RNF152	MULTI-MATCH	OvCa99_classI_Rep5	1		2	485.253631	968.49271	-0.67959	-0.00032978	0.88388	0.00042891	0.20429	9.9131E-05	485.25374604406693	59.694	0.15453	59.694	59.611	59.766	0	0.13525	0.00039592	NaN	93.195	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88238	+		58656	21961	48391	48437							0.007202930294738508
VAEQPAGGQL	10	Unmodified	_VAEQPAGGQL_					0	0	0			REV__ENSG00000176641|ENST00000312828|RNF152	REV__ENSG00000176641|ENST00000312828|RNF152	MULTI-MATCH	OvCa9_classI_Rep2	2		2	485.253631	968.49271	-1.7089	-0.00082925	1.9654	0.00095372	0.2565	0.00012447	485.25435461553076	62.409	0.95917	59.65	59.187	60.146	-2.7593	0.090776	0.0014455	NaN	93.195	40	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95821	+		58657	21961	48391	48437							0.007202930294738508
VAEQPAGGQL	10	Unmodified	_VAEQPAGGQL_					0	0	0			REV__ENSG00000176641|ENST00000312828|RNF152	REV__ENSG00000176641|ENST00000312828|RNF152	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	485.253631	968.49271	-0.35802	-0.00017373	0.071183	3.4542E-05	-0.28684	-0.00013919	485.25359607245366	62.791	1.4583	59.333	58.715	60.174	-3.4577	-0.22603	-0.00039281	NaN	93.195	57	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1014200	+		58658	21961	48391	48437							0.007202930294738508
VAERLAPV	8	Unmodified	_VAERLAPV_					0	0	0			REV__ENST00000546956.1_1_19:58514724-58514835:+|nuORF	REV__ENST00000546956.1_1_19:58514724-58514835:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	427.7597351074219	2	427.758352	853.502152	0.42162	0.00018035	-0.67233	-0.0002876	-0.25071	-0.00010724	427.7580284822098	63.552	2.1307	63.552	63.14	65.271	0					119	52	4	0	0	0	0.33245	2	5728	5728;5759		101.21	5.1639	1	26073000	+		58659	27429	48392	48438	64349;64350	64349					0.06954106105649771
VAERLAPV	8	Unmodified	_VAERLAPV_					0	0	0			REV__ENST00000546956.1_1_19:58514724-58514835:+|nuORF	REV__ENST00000546956.1_1_19:58514724-58514835:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	427.7593994140625	2	427.758352	853.502152	0.7314	0.00031286	-0.74228	-0.00031752	-0.010883	-4.6551E-06	427.7579611607295	66.908	1.7684	63.418	63.049	64.818	-3.4902					70	35	4	0	0	0	0.35894	1	4904	4904		96.048	0	1	622930	+		58660	27429	48392	48438	64351	64351					0.06954106105649771
VAESRARQL	9	Unmodified	_VAESRARQL_					0	0	0		nc|ENSG00000198467|P07951-3|TPM2;nc|ENSG00000198467|P07951-2|TPM2;CON__Q3SX28;ENST00000471212.5_1_9:35684790-35689844:-|nuORF	nc|ENSG00000198467|P07951-3|TPM2	nc|ENSG00000198467|P07951-3|TPM2	MULTI-MSMS	OvCa99_classI_Rep5	1	515.2932739257812	2	515.293622	1028.57269	-0.12853	-6.6231E-05	-1.2758	-0.0006574	-1.4043	-0.00072363	515.2930270331328	32.772	0.83178	32.772	32.503	33.335	0					67	16	5	0	0	0	0.55588	1	1494	1494		37.159	1.5408	1	13477000		+	58661	15257	48393	48439	64352	64352					0.05954779423313994
VAESRQAGL	9	Unmodified	_VAESRQAGL_					0	0	0			REV__ENST00000463001.5_1_1:157765953-157771747:-|nuORF	REV__ENST00000463001.5_1_1:157765953-157771747:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.7507629394531	2	465.753798	929.493044	-0.081161	-3.7801E-05	-3.8228	-0.0017805	-3.904	-0.0018183	465.7514399168433	47.319	2.4038	44.246	42.876	45.279	-3.0724					87	46	3	0	0	0	0.27001	1	2513	2513		66.429	8.618	1	2414500	+		58662	20848	48394	48440	64353	64353					0.025477127493331864
VAFAGFILLG	10	Unmodified	_VAFAGFILLG_					0	0	0			REV__PTCH1|p.S1176Yfs*8|1|0.05|ENSG00000185920|chr9:95449863-95449864|-/T|frameshift_variant	REV__PTCH1|p.S1176Yfs*8|1|0.05|ENSG00000185920|chr9:95449863-95449864|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.2967529296875	2	504.299853	1006.58515	-0.73291	-0.00036961	-3.7994	-0.0019161	-4.5323	-0.0022857	504.2978909366257	105.14	3.2976	103.13	102.58	105.88	-2.0161					166	64	4	0	0	0	0.49566	1	9605	9605		54.765	4.7401	1	823080	+		58663	22544	48395	48441	64354	64354					0.08212422833673827
VAFGIGLVQ	9	Unmodified	_VAFGIGLVQ_					0	0	0			REV__tr|A0A553SR92|A0A553SR92_NIACIROKfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_00645PE=3SV=1	REV__tr|A0A553SR92|A0A553SR92_NIACIROKfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_00645PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.28485107421875	2	452.268553	902.522553	0.99599	0.00045045	-3.7233	-0.0016839	-2.7273	-0.0012335	452.266633815331	47.754	0.3069	44.646	44.531	44.838	-3.1077					7	5	2	0	0	0	0.027326	1	2581	2581		76.847	2.8719	1	5188.5	+		58664	30705	48396	48442	64355	64355					0.06739276765472368
VAFISVKNNE	10	Unmodified	_VAFISVKNNE_					0	0	0		ENST00000318876.9_1_14:73437074-73437530:-|nuORF	ENST00000318876.9_1_14:73437074-73437530:-|nuORF	ENST00000318876.9_1_14:73437074-73437530:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.8013916015625	2	560.803488	1119.59242	3.0616	0.001717	-3.6261	-0.0020335	-0.56448	-0.00031656	560.8014582088352	129.77	2.693	128.31	127.94	130.63	-1.4565					149	54	4	0	0	0	0.62299	1	12649	12649		39.253	5.0803	1	2469500			58665	10364	48397	48443	64356	64356					0.03741110643431966
VAFNLVKSF	9	Unmodified	_VAFNLVKSF_					0	0	0		nc|ENSG00000133488|Q9UDX3-2|SEC14L4;ENST00000320982.3_1_22:30886116-30899718:-|nuORF;ENSG00000133488|ENST00000255858|SEC14L4;ENST00000321205.9_1_22:30886096-30899699:-|nuORF	nc|ENSG00000133488|Q9UDX3-2|SEC14L4	nc|ENSG00000133488|Q9UDX3-2|SEC14L4	MULTI-SECPEP	OvCa9_classI_Rep2	2	512.259033203125	2	512.794935	1023.57532	-0.6936	-0.00035567	-4.1749	-0.0021409	-4.8685	-0.0024965	512.7929280651239	56.748	1.0408	53.944	53.572	54.613	-2.804					28	20	2	0	0	0	0.027462	1	3978	3978		42.396	15.703	1	14850			58666	4223	48398	48444	64357	64357					0.0644723482827203
VAFRAQPIQL	10	Unmodified	_VAFRAQPIQL_					0	0	0			REV__ENSG00000117707|ENST00000366958|PROX1	REV__ENSG00000117707|ENST00000366958|PROX1	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.2549438476562	2	571.837665	1141.66078	-1.0309	-0.0005895	0.22108	0.00012642	-0.8098	-0.00046308	571.8377110406706	36.569	0.39897	36.569	36.397	36.796	0					19	8	3	0	0	0	0.027056	1	1920	1920		27.882	0	1	354820	+		58667	18365	48399	48445	64358	64358					0.09561400013944876
VAFTFEVEEA	10	Unmodified	_VAFTFEVEEA_					0	0	0			REV__ENST00000572438.1_1_17:4802033-4804946:-|nuORF	REV__ENST00000572438.1_1_17:4802033-4804946:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	571.2745361328125	2	571.274229	1140.53391	0.84935	0.00048521	-1.419	-0.00081063	-0.56964	-0.00032542	571.2732198528677	142.39	1.5314	142.39	141.64	143.17	0					65	30	3	0	0	0	0.50656	1	16646	16646		53.351	2.016	1	933830	+		58668	17895	48400	48446	64359	64359					-0.030739907217139262
VAFVIGIVGI	10	Unmodified	_VAFVIGIVGI_					0	0	0			REV__tr|A0A553SSP4|A0A553SSP4_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_03520PE=4SV=1	REV__tr|A0A553SSP4|A0A553SSP4_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_03520PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.76092529296875	2	494.315503	986.616454	-0.5892	-0.00029125	0.63662	0.00031469	0.047422	2.3441E-05	494.3158790642008	133.4	0.83649	132.28	132.12	132.96	-1.1249					25	16	2	0	0	0	0.026839	1	10715	10715		12.959	0	1	14958	+		58669	30859	48401	48447	64360	64360					0.12260995867757174
VAGAAAVPR	9	Unmodified	_VAGAAAVPR_					0	0	0			REV__ENST00000529731.5_1_11:126081674-126104922:+|nuORF	REV__ENST00000529731.5_1_11:126081674-126104922:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	406.2440490722656	2	406.24287	810.471186	3.8208	0.0015522	-0.82904	-0.00033679	2.9918	0.0012154	406.2424159191672	75.38	0.80245	75.38	74.92	75.723	0					41	19	3	0	0	0	0.32337	1	7501	7501		60.294	0	1	2852300	+		58670	27120	48402	48448	64361	64361					0.058369527914123864
VAGELPHLVK	10	Unmodified	_VAGELPHLVK_					0	0	0			REV__ENST00000481337.5_1_3:105238990-105260608:+|nuORF	REV__ENST00000481337.5_1_3:105238990-105260608:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8177490234375	2	531.818941	1061.62333	0.089047	4.7357E-05	-3.7428	-0.0019905	-3.6538	-0.0019431	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.64063	1	13775	13775		37.159	2.9866	1	263230	+		58671	21509	48403	48449	64362	64362					0.09498308748334239
VAGFLCSQ	8	Unmodified	_VAGFLCSQ_					0	0	0		ENST00000479976.5_1_16:840331-840735:+|nuORF;ENST00000464728.5_1_16:838721-840735:+|nuORF	ENST00000479976.5_1_16:840331-840735:+|nuORF	ENST00000479976.5_1_16:840331-840735:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	412.7042541503906	2	412.702189	823.389824	0.87685	0.00036188	2.4527	0.0010122	3.3295	0.0013741	412.7035160350844	30.816	1.8233	30.816	29.835	31.658	0					92	36	3	0	0	0	0.59148	2	1236	1210;1236		65.803	7.9919	1	467700			58672	12262	48404	48450	64363;64364	64364					-0.028934909628333116
VAGGAGGF	8	Unmodified	_VAGGAGGF_					0	0	0			REV__ENST00000413316.1_1_2:223726360-223765478:+|nuORF	REV__ENST00000413316.1_1_2:223726360-223765478:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	635.3126220703125	1	635.314751	634.307475	1.8892	0.0012003	0.59693	0.00037924	2.4861	0.0015795	635.3151513835896	115.22	0.79548	115.22	114.98	115.77	0					26	16	2	0	0	0	0.73579	1	13192	13192		10.185	0	1	290860	+		58673	25510	48405	48451	64365	64365					-0.02430644979472163
VAGGEVGKPP	10	Unmodified	_VAGGEVGKPP_					0	0	0		ENST00000513268.1_1_5:134681592-134686603:-|nuORF	ENST00000513268.1_1_5:134681592-134686603:-|nuORF	ENST00000513268.1_1_5:134681592-134686603:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.74407958984375	2	455.753267	909.491981	0.24923	0.00011359	0.2765	0.00012602	0.52573	0.0002396	455.7533067729004	70.867	0.38651	70.867	70.722	71.109	0					11	9	2	0	0	0	0.026551	1	6839	6839		51.193	0	1	233380			58674	13011	48406	48452	64366	64366					0.03361498380422745
VAGGGGGG	8	Unmodified	_VAGGGGGG_					0	0	0		ENSG00000165462|ENST00000298231|PHOX2A;tr|A0A7D6W3F2|A0A7D6W3F2_9CLOTAlanine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=alaSPE=3SV=1	REV__PRRC2A|p.G1884Rfs*57|1|0.07|ENSG00000204469|chr6:31636227-31636228|-/C|frameshift_variant;REV__nc|ENSG00000204469|P48634-2|PRRC2A	REV__nc|ENSG00000204469|P48634-2|PRRC2A	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.3070068359375	1	531.252151	530.244875	-0.44541	-0.00023663	3.4291	0.0018217	2.9837	0.0015851	531.2550981134117	54.638	0.21308	54.638	54.505	54.718	0					5	4	2	0	0	0	0.028476	1	4427	4427		10.185	0	1	36782	+		58675	23157;29102	48407	48453	64367	64367					-0.03903791047662253
VAGGGGGG	8	Unmodified	_VAGGGGGG_					0	0	0		ENSG00000165462|ENST00000298231|PHOX2A;tr|A0A7D6W3F2|A0A7D6W3F2_9CLOTAlanine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=alaSPE=3SV=1	REV__PRRC2A|p.G1884Rfs*57|1|0.07|ENSG00000204469|chr6:31636227-31636228|-/C|frameshift_variant;REV__nc|ENSG00000204469|P48634-2|PRRC2A	REV__nc|ENSG00000204469|P48634-2|PRRC2A	MULTI-MATCH	OvCa9_classI_Rep4_	4		1	531.252151	530.244875	-1.0652	-0.00056587	1.8188	0.00096626	0.75367	0.00040039	531.2539073661839	58.177	0.25095	54.832	54.698	54.949	-3.3449	0.09707	-0.00038948	NaN	10.185	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9699.1	+		58676	23157;29102	48407	48453							-0.03903791047662253
VAGGPGGG	8	Unmodified	_VAGGPGGG_					0	0	0		ENSG00000108352|ENST00000620260|RAPGEFL1;nc|ENSG00000108352|Q9UHV5|RAPGEFL1;ENST00000526559.5_1_11:64693020-64693122:+|nuORF	ENSG00000108352|ENST00000620260|RAPGEFL1	ENSG00000108352|ENST00000620260|RAPGEFL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.2549438476562	1	571.283451	570.276175	-0.91323	-0.00052171	-0.30859	-0.00017629	-1.2218	-0.00069801	571.284328628813	36.465	0.22783	36.465	36.304	36.532	0					6	4	2	0	0	0	0.028476	1	1920	1920		5.0869	0	1	14542			58677	2648	48408	48454	64368	64368					-0.026152180135568415
VAGGPRPVC	9	Unmodified	_VAGGPRPVC_					0	0	0			REV__ENSG00000168056|ENST00000301873|LTBP3	REV__ENSG00000168056|ENST00000301873|LTBP3	MULTI-MSMS	OvCa9_classI_Rep4_	4	428.2299499511719	2	428.228905	854.443257	1.121	0.00048003	2.1713	0.0009298	3.2922	0.0014098	428.2295825744896	141.19	1.095	139.73	139.4	140.5	-1.4627					35	20	3	0	0	0	0.64339	1	13801	13801		26.796	1.3459	1	39109	+		58678	21341	48409	48455	64369	64369					0.01021306539678335
VAGHRAVGL	9	Unmodified	_VAGHRAVGL_					0	0	0			REV__ENST00000392038.6_1_19:40739256-40739472:-|nuORF	REV__ENST00000392038.6_1_19:40739256-40739472:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	440.2749938964844	2	440.261594	878.508634	0.28199	0.00012415	-2.7032	-0.0011901	-2.4212	-0.001066	440.25937658736007	68.862	0.29848	66.241	66.018	66.316	-2.6203					6	5	2	0	0	0	0.027449	1	5437	5437		50.025	7.5501	1	5488.2	+		58679	25246	48410	48456	64370	64370					0.06452044057050443
VAGHRAVGL	9	Unmodified	_VAGHRAVGL_					0	0	0			REV__ENST00000392038.6_1_19:40739256-40739472:-|nuORF	REV__ENST00000392038.6_1_19:40739256-40739472:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	440.2752990722656	2	440.261594	878.508634	-0.8486	-0.00037361	-2.7966	-0.0012312	-3.6452	-0.0016049	440.26034472821806	69.61	0.28831	66.129	66.009	66.297	-3.4812					7	5	2	0	0	0	0.027433	1	5221	5221		68.485	36.53	1	13428	+		58680	25246	48410	48456	64371	64371					0.06452044057050443
VAGKLSDI	8	Unmodified	_VAGKLSDI_					0	0	0		ENSG00000078687|ENST00000696270|TNRC6C;nc|ENSG00000078687|Q9HCJ0-2|TNRC6C;ENGASE-TNRC6C|2|fusion	ENSG00000078687|ENST00000696270|TNRC6C	ENSG00000078687|ENST00000696270|TNRC6C	MULTI-MSMS	OvCa9_classI_Rep4_	4	401.7381591796875	2	401.737086	801.459619	2.0635	0.00082899	-2.0155	-0.00080968	0.048055	1.9305E-05	401.73618628885004	64.039	2.0315	60.564	60.109	62.141	-3.475					93	41	4	0	0	0	0.40148	3	4537	4529;4537;4549		87.754	16.376	1	2260900			58681	1598	48411	48457	64372;64373;64374	64373					0.050947109774256205
VAGKSVKSK	9	Unmodified	_VAGKSVKSK_					0	0	0		tr|A0A553SLB0|A0A553SLB0_NIACIClassISAM-dependentRNAmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_20300PE=4SV=1	tr|A0A553SLB0|A0A553SLB0_NIACIClassISAM-dependentRNAmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_20300PE=4SV=1	tr|A0A553SLB0|A0A553SLB0_NIACIClassISAM-dependentRNAmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_20300PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	452.28460693359375	2	452.284734	902.554916	1.4891	0.00067351	-2.0239	-0.00091536	-0.53473	-0.00024185	452.2836299597544	47.138	2.5308	44.428	43.993	46.524	-2.7097					129	50	4	0	0	0	0.35444	1	2922	2922		56.721	9.0637	1	825520			58682	33706	48412	48458	64375	64375					0.09974064168466157
VAGLPWWFL	9	Unmodified	_VAGLPWWFL_					0	0	0		nc|ENSG00000198625|O15151-5|MDM4;ENSG00000198625|ENST00000367182|MDM4	nc|ENSG00000198625|O15151-5|MDM4	nc|ENSG00000198625|O15151-5|MDM4	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.2620849609375	2	544.80002	1087.58549	1.1975	0.00065239	3.7354	0.002035	4.9329	0.0026874	544.8020238799662	149.91	0.59409	149.91	149.6	150.19	0					23	11	3	0	0	0	0.027462	1	17528	17528		39.021	14.517	1	88992			58683	8836	48413	48459	64376	64376					0.04519842553509079
VAGLVSMII	9	Unmodified	_VAGLVSMII_					0	0	0			REV__tr|A0A7D6VS48|A0A7D6VS48_9CLOTNrampfamilydivalentmetaltransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_04260PE=4SV=1	REV__tr|A0A7D6VS48|A0A7D6VS48_9CLOTNrampfamilydivalentmetaltransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_04260PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	451.7738342285156	2	451.772614	901.530675	NaN	NaN	NaN	NaN	NaN	NaN	NaN	149.66	1	149.66	149.16	150.16	0								0	0	0	0.18089	1	17519	17519		33.516	0	1		+		58684	31469	48414	48460	64377	64377					0.07597087690589888
VAGQLVTVYAL	11	Unmodified	_VAGQLVTVYAL_					0	0	0		tr|A0A553SU99|A0A553SU99_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_06620PE=4SV=1	tr|A0A553SU99|A0A553SU99_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_06620PE=4SV=1	tr|A0A553SU99|A0A553SU99_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_06620PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3280029296875	2	567.331882	1132.64921	0.76229	0.00043247	-4.4537	-0.0025267	-3.6914	-0.0020943	567.3291667889723	142.3	3.0938	140.84	139.71	142.81	-1.4627					144	59	3	0	0	0	0.67529	1	13893	13893		37.812	11.119	1	54551			58685	34588	48415	48461	64378	64378					0.08819158199935373
VAGRLKEDVL	10	Unmodified	_VAGRLKEDVL_					0	0	0		ENSG00000114767|ENST00000232888|RRP9	ENSG00000114767|ENST00000232888|RRP9	ENSG00000114767|ENST00000232888|RRP9	MULTI-MSMS	OvCa9_classI_Rep3	3	550.3279418945312	2	550.327131	1098.63971	-1.5395	-0.00084725	0.74414	0.00040952	-0.79539	-0.00043772	550.3275660732565	84.687	1.7638	82.426	81.881	83.645	-2.261					107	35	5	0	0	0	0.41408	1	4951	4951		66.429	2.222	1	1227100			58686	3039	48416	48462	64379	64379					0.09433389914420331
VAGRPAGVL	9	Unmodified	_VAGRPAGVL_					0	0	0			REV__KRTAP5-10|p.K111Wfs*116|1|0.04|ENSG00000204572|chr11:71565889-71565890|-/GGGAGGCTGTGGCTCCTGTGGGGGCTCCT|frameshift_variant	REV__KRTAP5-10|p.K111Wfs*116|1|0.04|ENSG00000204572|chr11:71565889-71565890|-/GGGAGGCTGTGGCTCCTGTGGGGGCTCCT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.752685546875	2	420.25852	838.502486	0.49751	0.00020908	-1.6341	-0.00068674	-1.1366	-0.00047766	420.257658277994	62.49	0.28592	62.49	62.335	62.621	0					9	6	2	0	0	0	0.027408	1	5556	5556		47.916	18.766	1	463070	+		58687	28343	48417	48463	64380	64380					0.0767752582552248
VAGSAVLPAI	10	Unmodified	_VAGSAVLPAI_					0	0	0			REV__ENST00000523277.6_1_8:41399408-41399603:+|nuORF	REV__ENST00000523277.6_1_8:41399408-41399603:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	449.2744140625	2	449.273835	896.533118	-0.25213	-0.00011328	0.07883	3.5416E-05	-0.1733	-7.7859E-05	449.2737182607347	93.211	1.2701	90.704	90.262	91.532	-2.5072					62	26	4	0	0	0	0.26259	1	8120	8120		85.359	0.44396	1	445970	+		58688	20071	48418	48464	64381	64381					0.08071259419898524
VAGTPSIVD	9	Unmodified	_VAGTPSIVD_					0	0	0			REV__tr|A0A7D6ZYM0|A0A7D6ZYM0_9CLOTAmmoniumtransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_16725PE=3SV=1	REV__tr|A0A7D6ZYM0|A0A7D6ZYM0_9CLOTAmmoniumtransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_16725PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	429.8862609863281	2	429.732	857.449448	-0.6631	-0.00028496	3.0499	0.0013106	2.3868	0.0010257	429.73379504837555	34.977	0.47252	34.977	34.725	35.198	0					19	9	3	0	0	0	0.027462	1	1747	1747		10.265	0.5596	1	45191	+		58689	32382	48419	48465	64382	64382					0.015021032521985944
VAGVHLFP	8	Unmodified	_VAGVHLFP_					0	0	0			REV__nc|ENSG00000158555|Q8WTR4-3|GDPD5	REV__nc|ENSG00000158555|Q8WTR4-3|GDPD5	MULTI-MSMS	OvCa9_classI_Rep2	2	420.24053955078125	2	420.242338	838.470124	-0.13393	-5.6284E-05	-4.3446	-0.0018258	-4.4785	-0.0018821	420.2403796182225	58.579	1.3779	55.799	55.285	56.662	-2.7801					64	26	3	0	0	0	0.7363	1	4249	4249		33.493	0	1	306450	+		58690	20572	48420	48466	64383	64383					0.04442738422517323
VAHITFTR	8	Unmodified	_VAHITFTR_					0	0	0			REV__nc|ENSG00000273777|Q6UY09-4|CEACAM20	REV__nc|ENSG00000273777|Q6UY09-4|CEACAM20	MULTI-MSMS	OvCa99_classI_Rep5	1	472.7665710449219	2	472.769252	943.52395	0.31769	0.0001502	-0.2141	-0.00010122	0.10359	4.8975E-05	472.76893237104906	57.625	1.3487	57.625	57.264	58.613	0					87	31	4	0	0	0	0.66992	1	4892	4892		49.442	10.189	1	4633200	+		58691	15777	48421	48467	64384	64384					0.04992910854218735
VAHYMPTF	8	Unmodified	_VAHYMPTF_					0	0	0			REV__nc|ENSG00000104687|P00390-5|GSR	REV__nc|ENSG00000104687|P00390-5|GSR	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.7664794921875	2	483.231113	964.447674	-0.48832	-0.00023597	0.11645	5.6271E-05	-0.37187	-0.0001797	483.23107601576424	29.161	0.64901	29.161	28.987	29.636	0					16	12	2	0	0	0	0.028476	1	1052	1052		28.254	0	1	149290	+		58692	17674	48422	48468	64385	64385					-0.03597229037404759
VAIADEITRA	10	Unmodified	_VAIADEITRA_					0	0	0			REV__ENSG00000007080|ENST00000445755|CCDC124	REV__ENSG00000007080|ENST00000445755|CCDC124	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2857666015625	2	529.795663	1057.57677	2.3241	0.0012313	-0.20466	-0.00010843	2.1194	0.0011229	529.795452788595	76.091	0.68465	76.091	75.874	76.558	0					37	16	3	0	0	0	0.026714	1	7579	7579		51.193	25.743	1	2731000	+		58693	16429	48423	48469	64386	64386					0.05028824126361542
VAIALAHCLLL	11	Unmodified	_VAIALAHCLLL_					0	0	0			REV__nc|ENSG00000150556|Q8NI32|LYPD6B	REV__nc|ENSG00000150556|Q8NI32|LYPD6B	MULTI-MSMS	OvCa9_classI_Rep3	3	568.8474731445312	2	568.846645	1135.67874	1.1361	0.00064626	-1.1496	-0.00065395	-0.013528	-7.6955E-06	568.845786397459	122.98	2.0826	121.95	121	123.08	-1.034					125	39	4	0	0	0	0.71591	1	9522	9522		24.203	1.1603	1	474050	+		58694	20194	48424	48470	64387	64387					0.11632398944448141
VAIALPSSFAN	11	Unmodified	_VAIALPSSFAN_					0	0	0			REV__ENSG00000088881|ENST00000609451|EBF4	REV__ENSG00000088881|ENST00000609451|EBF4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.7474365234375	2	545.300581	1088.58661	0.045209	2.4652E-05	-0.13717	-7.4798E-05	-0.091959	-5.0145E-05	545.3004044373608	111.43	1.7893	109.92	109.16	110.95	-1.5111					58	33	4	0	0	0	0.025638	1	10248	10248		23.523	0.94304	1	79471	+		58695	17186	48425	48471	64388	64388					0.045860121317673475
VAIALPSSFAN	11	Unmodified	_VAIALPSSFAN_					0	0	0			REV__ENSG00000088881|ENST00000609451|EBF4	REV__ENSG00000088881|ENST00000609451|EBF4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	545.300581	1088.58661	-0.079063	-4.3113E-05	-0.32851	-0.00017914	-0.40757	-0.00022225	545.3002501152504	110.06	1.088	109.88	109.61	110.7	-0.17237	-0.0094905	0.00037772	NaN	23.523	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94545	+		58696	17186	48425	48471							0.045860121317673475
VAIALPSSFAN	11	Unmodified	_VAIALPSSFAN_					0	0	0			REV__ENSG00000088881|ENST00000609451|EBF4	REV__ENSG00000088881|ENST00000609451|EBF4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	545.300581	1088.58661	0.709	0.00038662	-1.137	-0.00062003	-0.42804	-0.00023341	545.2996540385213	110.98	0.85055	109.88	109.6	110.45	-1.1038	-0.018268	-0.00050407	NaN	23.523	37	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80298	+		58697	17186	48425	48471							0.045860121317673475
VAIKAGTTL	9	Unmodified	_VAIKAGTTL_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-MSMS	OvCa99_classI_Rep5	1	437.2753601074219	2	437.273835	872.533118	1.3018	0.00056926	-1.6465	-0.00071997	-0.34467	-0.00015071	437.2730840272514	66.749	0.8058	66.749	66.531	67.337	0					43	19	4	0	0	0	0.13504	1	6202	6202		87.696	16.401	1	2637600			58698	6685	48426	48472	64389	64389					0.0917525941989652
VAILGRPE	8	Unmodified	_VAILGRPE_					0	0	0			REV__nc|ENSG00000167962|Q86UK7-4|ZNF598	REV__nc|ENSG00000167962|Q86UK7-4|ZNF598	MULTI-SECPEP	OvCa99_classI_Rep5	1	428.23944091796875	2	427.758352	853.502152	0.095259	4.0748E-05	0.70047	0.00029963	0.79573	0.00034038	427.75798897429706	51.206	0.54948	51.206	51.036	51.585	0					20	12	2	0	0	0	0.028476	1	3938	3938		33.516	0	1	147470	+		58699	27683	48427	48473	64390	64390					0.0695410610566114
VAINSAIVGI	10	Unmodified	_VAINSAIVGI_					0	0	0			REV__tr|A0A553SRE8|A0A553SRE8_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_00935PE=4SV=1	REV__tr|A0A553SRE8|A0A553SRE8_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_00935PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	478.7921142578125	2	478.792392	955.570232	0.14193	6.7955E-05	-1.2477	-0.00059739	-1.1058	-0.00052944	478.7916935444692	82.342	2.8721	80.713	80.198	83.07	-1.6293					121	56	4	0	0	0	0.45822	1	7024	7024		60.118	1.3363	1	897530	+		58700	30724	48428	48474	64391	64391					0.09066930965661868
VAIPTFRQL	9	Unmodified	_VAIPTFRQL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;COL6A3|p.T1393Cfs*9|1|0.09|ENSG00000163359|chr2:237371828-237371840|GCTCCCGGAAGGT/-|frameshift_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	522.814453125	2	522.813659	1043.61277	1.1954	0.00062498	-0.27266	-0.00014255	0.92276	0.00048243	522.8136505877889	107.08	2.4376	107.08	106.54	108.97	0					140	56	5	0	0	0	0.043101	4	12070	12046;12070;12094;12125		124.08	39.165	1	119360000			58701	6293	48429	48475	64392;64393;64394;64395	64393					0.09270326093883341
VAIQAVLSL	9	Unmodified	_VAIQAVLSL_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ACTB|p.K238Rfs*46|1|0.21|ENSG00000075624|chr7:5528372-5528372|C/-|frameshift_variant;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENST00000418351.1_1_15:44281927-44282254:-|nuORF;ENST00000428275.1_1_X:53172669-53172729:-|nuORF;ENST00000507366.1_1_5:79596158-79596224:-|nuORF;ENST00000403258.1_1_6:88986231-88986483:-|nuORF;ENST00000437653.1_1_3:175695849-175696008:-|nuORF;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OvCa99_classI_Rep5	1	457.29083251953125	2	457.289485	912.564418	0.99148	0.00045339	1.428	0.000653	2.4195	0.0011064	457.28999347617025	141.89	2.9183	141.89	141.44	144.35	0					112	58	3	0	0	0	0.059253	1	16599	16599		113.41	14.037	1	466050			58702	1537;8634;5081	48430	48476	64396	64396					0.10463832454001931
VAIVLIFMVI	10	Unmodified	_VAIVLIFMVI_					0	0	0			REV__tr|A0A553SKJ9|A0A553SKJ9_NIACIStageIIsporulationproteinPOS=NialliacirculansOX=1397GN=CEQ21_18915PE=4SV=1	REV__tr|A0A553SKJ9|A0A553SKJ9_NIACIStageIIsporulationproteinPOS=NialliacirculansOX=1397GN=CEQ21_18915PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.3380126953125	2	559.356314	1116.69807	0.6207	0.00034719	2.577	0.0014414	3.1977	0.0017886	559.3575288560635	62.592	0.90765	62.592	61.994	62.902	0					34	21	2	0	0	0	0.027265	1	5540	5540		12.959	0	1	278170	+		58703	30134	48431	48477	64397	64397					0.1443935523534492
VAKACSQFFVP	11	Unmodified	_VAKACSQFFVP_					0	0	0			REV__ENSG00000158486|ENST00000698260|DNAH3	REV__ENSG00000158486|ENST00000698260|DNAH3	MULTI-MSMS	OvCa9_classI_Rep2	2	598.8088989257812	2	598.810259	1195.60597	-0.27081	-0.00016216	-2.345	-0.0014042	-2.6158	-0.0015664	598.8089070417255	110.82	1.5782	110.68	110.34	111.91	-0.13961					110	31	5	0	0	0	0.60323	1	10455	10455		44.377	5.571	1	950560	+		58704	20568	48432	48478	64398	64398					0.01598645151011624
VAKAFAGADFV	11	Unmodified	_VAKAFAGADFV_					0	0	0		chr6:16285835-16290465|109|10.16|0.39|4.69|+|2|GMPR,None|1	chr6:16285835-16290465|109|10.16|0.39|4.69|+|2|GMPR,None|1	chr6:16285835-16290465|109|10.16|0.39|4.69|+|2|GMPR,None|1	MULTI-MSMS	OvCa9_classI_Rep2	2	548.2952880859375	2	548.295299	1094.57605	-1.4493	-0.00079464	1.5915	0.0008726	0.14219	7.7962E-05	548.2961982412694	34.285	4.3001	31.575	31.119	35.419	-2.7097					197	86	6	0	0	0	0.65947	1	1439	1439		39.253	0.44669	1	2359300			58705	507	48433	48479	64399	64399					0.032540294773070855
VAKALADAVV	10	Unmodified	_VAKALADAVV_					0	0	0			REV__ENSG00000158863|ENST00000289921|FHIP2B	REV__ENSG00000158863|ENST00000289921|FHIP2B	MULTI-MSMS	OvCa9_classI_Rep3	3	478.79327392578125	2	478.792392	955.570232	-0.51114	-0.00024473	-0.47899	-0.00022934	-0.99013	-0.00047407	478.79207532118255	82.802	1.8434	80.505	80.235	82.079	-2.2963					87	38	5	0	0	0	0.3976	1	4719	4719		68.787	2.3575	1	1894200	+		58706	20587	48434	48480	64400	64400					0.09066930965650499
VAKAVTQAL	9	Unmodified	_VAKAVTQAL_					0	0	0		ENSG00000137076|ENST00000314888|TLN1;nc|ENSG00000137076|Q9Y490-2|TLN1;TLN1|p.D1277Afs*54|1|0.12|ENSG00000137076|chr9:35711644-35711645|-/G|frameshift_variant	ENSG00000137076|ENST00000314888|TLN1	ENSG00000137076|ENST00000314888|TLN1	MULTI-MSMS	OvCa99_classI_Rep5	1	450.7817687988281	2	450.779285	899.544017	0.58102	0.00026191	-0.73621	-0.00033187	-0.15518	-6.9953E-05	450.77881318227406	57.755	0.8816	57.755	57.522	58.403	0					47	20	4	0	0	0	0.1149	1	4866	4866		93.143	7.7838	1	2548100			58707	4552	48435	48481	64401	64401					0.09022661794165288
VAKCLGRGSV	10	Unmodified	_VAKCLGRGSV_					0	0	0			REV__PYROXD2|p.A3V|1|0.31|ENSG00000119943|chr10:98415128-98415128|G/A|missense_variant	REV__PYROXD2|p.A3V|1|0.31|ENSG00000119943|chr10:98415128-98415128|G/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.7672119140625	2	495.281669	988.548785	0.91716	0.00045425	-3.1289	-0.0015497	-2.2118	-0.0010954	495.28020223543257	68.247	0.43799	64.757	64.478	64.916	-3.4902					14	8	2	0	0	0	0.026915	1	5071	5071		35.618	0	1	29750	+		58708	29326	48436	48482	64402	64402					0.0540522266529706
VAKCLGRGSV	10	Unmodified	_VAKCLGRGSV_					0	0	0			REV__PYROXD2|p.A3V|1|0.31|ENSG00000119943|chr10:98415128-98415128|G/A|missense_variant	REV__PYROXD2|p.A3V|1|0.31|ENSG00000119943|chr10:98415128-98415128|G/A|missense_variant	MULTI-MATCH	OvCa99_classI_Rep5	1		2	495.281669	988.548785	-0.37481	-0.00018564	-2.8685	-0.0014207	-3.2433	-0.0016063	495.2802124142458	64.522	0.41567	64.522	64.294	64.71	0	-0.11725	4.4849E-05	NaN	27.882	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	384900	+		58709	29326	48436	48482							0.0540522266529706
VAKKSGEILDK	11	Unmodified	_VAKKSGEILDK_					0	0	0		tr|A0A553SH94|A0A553SH94_NIACILargeribosomalsubunitproteinuL24OS=NialliacirculansOX=1397GN=rplXPE=3SV=1	tr|A0A553SH94|A0A553SH94_NIACILargeribosomalsubunitproteinuL24OS=NialliacirculansOX=1397GN=rplXPE=3SV=1	tr|A0A553SH94|A0A553SH94_NIACILargeribosomalsubunitproteinuL24OS=NialliacirculansOX=1397GN=rplXPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	594.35302734375	2	594.353345	1186.69214	1.0636	0.00063218	-3.8559	-0.0022917	-2.7922	-0.0016596	594.3509100676877	142.44	0.98456	142.44	142.04	143.02	0					50	19	4	0	0	0	0.56391	1	16653	16653		47.96	2.9373	1	406610			58710	33249	48437	48483	64403	64403					0.10625928257377382
VAKKVSHELL	10	Unmodified	_VAKKVSHELL_					0	0	0			REV__ENST00000538334.1_1_12:121766117-121768505:-|nuORF	REV__ENST00000538334.1_1_12:121766117-121768505:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	562.34375	2	562.345323	1122.67609	-2.9015	-0.0016316	-0.70711	-0.00039764	-3.6086	-0.0020293	562.3448419475409	142.33	4.504	141.32	140	144.5	-1.0106					205	90	3	0	0	0	0.75313	1	11954	11954		24.519	1.4767	1	106680	+		58711	17196	48438	48484	64404	64404					0.11966266811123205
VAKNKPLLI	9	Unmodified	_VAKNKPLLI_					0	0	0		tr|A0A553SUQ6|A0A553SUQ6_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_05585PE=3SV=1	tr|A0A553SUQ6|A0A553SUQ6_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_05585PE=3SV=1	tr|A0A553SUQ6|A0A553SUQ6_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_05585PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.33331298828125	2	498.334227	994.653902	0.034655	1.727E-05	-0.51496	-0.00025662	-0.48031	-0.00023935	498.3339335091273	123.54	3.2541	123.31	122.99	126.25	-0.23193					175	65	5	0	0	0	0.55588	1	12133	12133		37.159	6.6555	1	3004600			58712	34631	48439	48485	64405	64405					0.15636087133384535
VAKNKPLLI	9	Unmodified	_VAKNKPLLI_					0	0	0		tr|A0A553SUQ6|A0A553SUQ6_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_05585PE=3SV=1	tr|A0A553SUQ6|A0A553SUQ6_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_05585PE=3SV=1	tr|A0A553SUQ6|A0A553SUQ6_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_05585PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.33367919921875	2	498.334227	994.653902	1.2643	0.00063007	-1.8659	-0.00092985	-0.60157	-0.00029978	498.3332884380841	124.71	3.4398	123.66	123.27	126.71	-1.0519					179	65	5	0	0	0	0.53957	1	9798	9798		38.806	5.9937	1	3929400			58713	34631	48439	48485	64406	64406					0.15636087133384535
VAKPLIIRRVV	11	Unmodified	_VAKPLIIRRVV_					0	0	0			REV__ENST00000287025.3_1_8:97270644-97270794:-|nuORF	REV__ENST00000287025.3_1_8:97270644-97270794:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	632.4312744140625	2	632.434807	1262.85506	-5.7395	-0.0036299	-0.067111	-4.2443E-05	-5.8066	-0.0036723	632.4345273657251	163.44	1.2114	163.21	162.72	163.93	-0.22696					106	40	3	0	0	0	0.72545	1	16647	16647		9.7057	3.393	1	356230	+		58714	24141	48440	48486	64407	64407					0.2341477616987504
VAKPNVIL	8	Unmodified	_VAKPNVIL_					0	0	0		ENSG00000198576|ENST00000356613|ARC	ENSG00000198576|ENST00000356613|ARC	ENSG00000198576|ENST00000356613|ARC	MULTI-MSMS	OvCa9_classI_Rep4_	4	427.2794494628906	2	427.278921	852.543289	0.021764	9.2995E-06	-0.35637	-0.00015227	-0.3346	-0.00014297	427.2786176360932	101.69	1.1846	99.421	99.16	100.34	-2.2665					48	22	3	0	0	0	0.64377	1	9149	9149		54.765	0	1	148530			58715	8831	48441	48487	64408	64408					0.11111867145143606
VAKPNVIL	8	Unmodified	_VAKPNVIL_					0	0	0		ENSG00000198576|ENST00000356613|ARC	ENSG00000198576|ENST00000356613|ARC	ENSG00000198576|ENST00000356613|ARC	MULTI-MATCH	OvCa9_classI_Rep2	2		2	427.278921	852.543289	-1.1035	-0.00047149	1.1998	0.00051263	0.096295	4.1145E-05	427.2792782686328	100.11	0.99191	99.282	99.014	100.01	-0.83051	-0.093343	0.00054789	NaN	54.765	47	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112550			58716	8831	48441	48487							0.11111867145143606
VAKPNVIL	8	Unmodified	_VAKPNVIL_					0	0	0		ENSG00000198576|ENST00000356613|ARC	ENSG00000198576|ENST00000356613|ARC	ENSG00000198576|ENST00000356613|ARC	MULTI-MATCH	OvCa9_classI_Rep3	3		2	427.278921	852.543289	-0.3533	-0.00015096	0.33541	0.00014332	-0.017883	-7.641E-06	427.2789030290117	101.03	0.98505	99.423	99.144	100.13	-1.6053	0.047592	-0.00019075	NaN	54.765	44	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169430			58717	8831	48441	48487							0.11111867145143606
VAKQLLPEL	9	Unmodified	_VAKQLLPEL_					0	0	0			REV__ENSG00000198883|ENST00000535214|PNMA5	REV__ENSG00000198883|ENST00000535214|PNMA5	MSMS	OvCa9_classI_Rep4_	4	505.81549072265625	2	505.815867	1009.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	109.27	1	107.54	107.04	108.04	-1.7256								0	0	0	0.17442	1	10026	10026		42.396	5.237	1		+		58718	23084	48442	48488	64409	64409					0.11275790516799589
VAKVEFSKGTT	11	Unmodified	_VAKVEFSKGTT_					0	0	0			REV__tr|A0A553SRL4|A0A553SRL4_NIACIMn2+/Zn2+ABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_01185PE=3SV=1	REV__tr|A0A553SRL4|A0A553SRL4_NIACIMn2+/Zn2+ABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_01185PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	583.8231201171875	2	583.824421	1165.63429	-0.17595	-0.00010273	-0.13861	-8.0926E-05	-0.31457	-0.00018365	583.8242751435387	106.81	1.1772	106.5	106.23	107.4	-0.30836					69	23	4	0	0	0	0.5804	1	9965	9965		46.457	3.5925	1	455720	+		58719	30745	48443	48489	64410	64410					0.0580966633197022
VAKVVNSGR	9	Unmodified	_VAKVVNSGR_					0	0	0		ENSG00000182606|ENST00000327628|TRAK1	ENSG00000182606|ENST00000327628|TRAK1	ENSG00000182606|ENST00000327628|TRAK1	MULTI-MSMS	OvCa99_classI_Rep5	1	465.27984619140625	2	465.279983	928.545414	0.13103	6.0966E-05	-0.20859	-9.7052E-05	-0.077557	-3.6086E-05	465.2797695644388	32.577	0.63533	32.577	32.403	33.039	0					29	12	4	0	0	0	0.42676	1	1436	1436		49.442	10.189	1	283130			58720	8013	48444	48490	64411	64411					0.07828295882950442
VALADGGRP	9	Unmodified	_VALADGGRP_					0	0	0		ENSG00000090861|ENST00000261772|AARS1;nc|ENSG00000090861|P49588-2|AARS1	ENSG00000090861|ENST00000261772|AARS1	ENSG00000090861|ENST00000261772|AARS1	MULTI-MSMS	OvCa99_classI_Rep5	1	428.23980712890625	2	428.237784	854.461016	-0.46611	-0.00019961	0.27316	0.00011698	-0.19295	-8.2627E-05	428.2377264438821	64.354	0.65887	64.354	64.091	64.75	0					31	15	3	0	0	0	0.40667	1	5844	5844		51.335	0	1	1741900			58721	1849	48445	48491	64412	64412					0.027963450661900424
VALEALSISI	10	Unmodified	_VALEALSISI_					0	0	0			REV__ENSG00000158315|ENST00000372990|RHBDL2	REV__ENSG00000158315|ENST00000372990|RHBDL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.7654724121094	2	508.305332	1014.59611	-0.65963	-0.00033529	2.8611	0.0014543	2.2015	0.001119	508.30622193869715	63.56	0.62136	60.085	59.772	60.393	-3.475					16	12	2	0	0	0	0.026802	1	4448	4448		34.173	0	1	22458	+		58722	20563	48446	48492	64413	64413					0.08939780417290422
VALEDWIH	8	Unmodified	_VALEDWIH_					0	0	0			REV__ENST00000413606.5_1_1:93791451-93805219:-|nuORF	REV__ENST00000413606.5_1_1:93791451-93805219:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.2915954589844	2	491.753267	981.491981	0.9808	0.00048231	0.55537	0.00027311	1.5362	0.00075542	491.75274759259696	81.401	2.3752	79.752	79.215	81.59	-1.6485					120	46	5	0	0	0	0.028476	1	7092	7092		21.702	9.4955	1	124840	+		58723	25514	48447	48493	64414	64414					0.0004949838042875854
VALKKFVA	8	Unmodified	_VALKKFVA_					0	0	0		nc|ENSG00000116260|O00391-2|QSOX1;ENSG00000116260|ENST00000367602|QSOX1	nc|ENSG00000116260|O00391-2|QSOX1	nc|ENSG00000116260|O00391-2|QSOX1	MULTI-SECPEP	OvCa99_classI_Rep5	1	438.2782287597656	2	438.289288	874.564024	1.125	0.00049308	-1.9348	-0.000848	-0.8098	-0.00035493	438.28801375296956	62.693	0.23607	62.693	62.541	62.777	0					7	5	2	0	0	0	0.028476	1	5608	5608		37.028	3.5355	1	130210			58724	3169	48448	48494	64415	64415					0.12172457524798119
VALKNLDLS	9	Unmodified	_VALKNLDLS_					0	0	0			REV__tr|A0A553SK47|A0A553SK47_NIACICelldivisionproteinZapAOS=NialliacirculansOX=1397GN=zapAPE=4SV=1	REV__tr|A0A553SK47|A0A553SK47_NIACICelldivisionproteinZapAOS=NialliacirculansOX=1397GN=zapAPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.7637023925781	2	486.78985	971.565146	-0.16037	-7.8065E-05	4.0921	0.001992	3.9317	0.0019139	486.79169032620894	62.471	0.78213	59.013	58.715	59.498	-3.4577					36	15	3	0	0	0	0.027425	1	4347	4347		69.628	23.655	1	149730	+		58725	30075	48449	48495	64416	64416					0.07822627103041668
VALKNLDLS	9	Unmodified	_VALKNLDLS_					0	0	0			REV__tr|A0A553SK47|A0A553SK47_NIACICelldivisionproteinZapAOS=NialliacirculansOX=1397GN=zapAPE=4SV=1	REV__tr|A0A553SK47|A0A553SK47_NIACICelldivisionproteinZapAOS=NialliacirculansOX=1397GN=zapAPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	486.78985	971.565146	-1.188	-0.0005783	5.6716	0.0027609	4.4836	0.0021826	486.79227353027613	61.576	1.1182	58.817	58.464	59.582	-2.7593	-0.098471	0.00073087	NaN	69.628	45	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	91141	+		58726	30075	48449	48495							0.07822627103041668
VALLAGLPP	9	Unmodified	_VALLAGLPP_					0	0	0			REV__ENSG00000136628|ENST00000366923|EPRS1	REV__ENSG00000136628|ENST00000366923|EPRS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	425.77569580078125	2	425.773471	849.53239	-0.54738	-0.00023306	3.7264	0.0015866	3.179	0.0013535	425.7749745888364	69.607	2.0379	66.126	65.811	67.849	-3.4812					126	41	5	0	0	0	0.68641	1	5204	5204		21.702	0	1	3927600	+		58727	19395	48450	48496	64417	64417					0.10160464770854105
VALLAPKTQ	9	Unmodified	_VALLAPKTQ_					0	0	0			REV__nc|ENSG00000105793|A4D1E9-2|GTPBP10	REV__nc|ENSG00000105793|A4D1E9-2|GTPBP10	MULTI-MSMS	OvCa9_classI_Rep2	2	470.7958984375	2	470.794935	939.575317	0.20993	9.8834E-05	-0.69896	-0.00032907	-0.48903	-0.00023024	470.79448322254706	79.584	1.8764	77.889	77.241	79.118	-1.6951					106	36	4	0	0	0	0.24951	1	6697	6697		68.787	0	1	702100	+		58728	15552	48451	48497	64418	64418					0.10311234828293436
VALLLLLL	8	Unmodified	_VALLLLLL_					0	0	0		ENST00000502974.1_1_4:74904133-74904340:-|nuORF;ENST00000510048.1_1_4:74964514-74964837:-|nuORF;ENST00000510390.1_1_4:74903808-74904340:-|nuORF;ENST00000509101.1_1_4:74735175-74735707:+|nuORF;ENSG00000163739|ENST00000395761|CXCL1;ENSG00000163734|ENST00000296026|CXCL3;ENSG00000081041|ENST00000508487|CXCL2;ENST00000511669.1_1_4:74904005-74904475:-|nuORF;ENST00000527315.5_1_15:69323805-69349033:+|nuORF;nc|ENSG00000290203|Q96PH1-4|NOX5;nc|ENSG00000290203|Q96PH1-6|NOX5;nc|ENSG00000290203|Q96PH1-3|NOX5;nc|ENSG00000290203|Q96PH1-2|NOX5;ENSG00000255346|ENST00000388866|NOX5;nc|ENSG00000290203|Q96PH1-5|NOX5	ENST00000502974.1_1_4:74904133-74904340:-|nuORF;ENST00000527315.5_1_15:69323805-69349033:+|nuORF	ENST00000527315.5_1_15:69323805-69349033:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.28948974609375	2	434.317515	866.620476	1.9604	0.00085144	-4.3586	-0.001893	-2.3982	-0.0010416	434.31572167970825	85.567	0.58324	82.921	82.66	83.243	-2.6463					19	11	2	0	0	0	0.028476	1	7173	7173		24.504	0	1	39710			58729	12858;9455	48452	48498	64419	64419					0.1818308536147697
VALLLPGAP	9	Unmodified	_VALLLPGAP_					0	0	0		ENSG00000167992|ENST00000335613|VWCE;nc|ENSG00000167992|Q96DN2-2|VWCE;VWCE|p.P189Lfs*42|1|0.05|ENSG00000167992|chr11:61282881-61282882|-/AATTGCTGCGTGGTAGGGGTAAGCCCCAATGA|frameshift_variant	ENSG00000167992|ENST00000335613|VWCE	ENSG00000167992|ENST00000335613|VWCE	MULTI-MSMS	OvCa9_classI_Rep4_	4	425.77569580078125	2	425.773471	849.53239	-0.54738	-0.00023306	3.7264	0.0015866	3.179	0.0013535	425.7749745888364	69.607	2.0379	66.126	65.811	67.849	-3.4812					126	41	5	0	0	0	0.61768	1	5278	5278		29.842	0	1	3927600			58730	6861	48453	48499	64420	64420					0.10160464770854105
VALLPPGAL	9	Unmodified	_VALLPPGAL_					0	0	0		ENSG00000137642|ENST00000260197|SORL1;ENST00000532451.1_1_11:121323091-121416136:+|nuORF;SORL1-SC5DL|1|fusion;SORL1-TECTA|1|fusion;SORL1-TECTA|2|fusion;SORL1-CEP164|1|fusion	ENSG00000137642|ENST00000260197|SORL1;SORL1-CEP164|1|fusion	ENSG00000137642|ENST00000260197|SORL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	425.7760009765625	2	425.773471	849.53239	-0.86174	-0.00036691	3.963	0.0016873	3.1013	0.0013204	425.7750552355212	71.84	1.752	68.383	67.924	69.676	-3.4563					99	35	4	0	0	0	0.70973	1	5487	5487		14.664	0	1	1857400			58731	4603;32844	48454	48500	64421	64421					0.10160464770854105
VALLQPPL	8	Unmodified	_VALLQPPL_					0	0	0		ENSG00000183161|ENST00000327470|FANCF	ENSG00000183161|ENST00000327470|FANCF	ENSG00000183161|ENST00000327470|FANCF	MULTI-MSMS	OvCa9_classI_Rep4_	4	425.7751159667969	2	425.773471	849.53239	-0.86174	-0.00036691	3.963	0.0016873	3.1013	0.0013204	425.7750552355212	71.84	1.752	68.383	67.924	69.676	-3.4563					99	35	4	0	0	0	0.74816	1	5510	5510		15.636	0	1	1857400			58732	8056	48455	48501	64422	64422					0.10160464770854105
VALLSFTT	8	Unmodified	_VALLSFTT_					0	0	0		sp|P09719|US14_HCMVAUncharacterizedproteinHVLF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US14PE=3SV=2;sp|F5HD92|US14_HCMVMMembraneproteinUS14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US14PE=3SV=1	sp|P09719|US14_HCMVAUncharacterizedproteinHVLF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US14PE=3SV=2	sp|P09719|US14_HCMVAUncharacterizedproteinHVLF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US14PE=3SV=2	MULTI-MSMS	OvCa9_classI_Rep2	2	426.2458801269531	2	426.247286	850.48002	-0.93249	-0.00039747	-2.0488	-0.0008733	-2.9813	-0.0012708	426.2463036759244	138.33	1.7168	138.1	137.59	139.3	-0.22696					83	34	3	0	0	0	0.74679	1	13809	13809		28.254	0	1	161940			58733	32887	48456	48502	64423	64423					0.04879881637236849
VALLSFTT	8	Unmodified	_VALLSFTT_					0	0	0		sp|P09719|US14_HCMVAUncharacterizedproteinHVLF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US14PE=3SV=2;sp|F5HD92|US14_HCMVMMembraneproteinUS14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US14PE=3SV=1	sp|P09719|US14_HCMVAUncharacterizedproteinHVLF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US14PE=3SV=2	sp|P09719|US14_HCMVAUncharacterizedproteinHVLF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US14PE=3SV=2	MULTI-MSMS	OvCa9_classI_Rep3	3	426.2458801269531	2	426.247286	850.48002	-1.1759	-0.00050123	-1.8651	-0.00079498	-3.041	-0.0012962	426.2464135300909	139.12	1.5749	138.06	137.54	139.11	-1.0595					80	31	4	0	0	0	0.74971	1	11418	11418		26.796	0	1	422340			58734	32887	48456	48502	64424	64424					0.04879881637236849
VALPRLFCVAV	11	Unmodified	_VALPRLFCVAV_					0	0	0		ENST00000396862.1_1_16:3351968-3355329:-|nuORF	ENST00000396862.1_1_16:3351968-3355329:-|nuORF	ENST00000396862.1_1_16:3351968-3355329:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.8301391601562	2	594.352094	1186.68964	-0.84551	-0.00050253	2.458	0.0014609	1.6124	0.00095836	594.3535019121944	36.94	0.45396	36.94	36.751	37.205	0					21	9	3	0	0	0	0.026187	1	1976	1976		15.642	0	1	140000			58735	11326	48457	48503	64425	64425					0.10375801318718914
VALQPPLL	8	Unmodified	_VALQPPLL_					0	0	0		ENSG00000205710|ENST00000381365|C17orf107	ENSG00000205710|ENST00000381365|C17orf107	ENSG00000205710|ENST00000381365|C17orf107	MULTI-MSMS	OvCa9_classI_Rep2	2	425.7750549316406	2	425.773471	849.53239	-0.95445	-0.00040638	4.1695	0.0017752	3.215	0.0013689	425.7751660668595	68.762	2.1455	66.142	65.721	67.866	-2.6203					132	42	5	0	0	0	0.74816	1	5445	5445		15.636	0	1	3515300			58736	9083	48458	48504	64426	64426					0.10160464770854105
VALRLSVTI	9	Unmodified	_VALRLSVTI_					0	0	0		ENST00000432176.6_1_7:22984841-22985015:-|nuORF	ENST00000432176.6_1_7:22984841-22985015:-|nuORF	ENST00000432176.6_1_7:22984841-22985015:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.79290771484375	2	486.316035	970.617516	0.02702	1.314E-05	0.46404	0.00022567	0.49106	0.00023881	486.31623795099983	73.654	0.42785	73.654	73.44	73.868	0					21	10	3	0	0	0	0.027441	1	7237	7237		55.504	28.811	1	771850			58737	11805	48459	48505	64427	64427					0.13103210236681662
VALSLGVQAV	10	Unmodified	_VALSLGVQAV_					0	0	0			REV__ENST00000336576.9_2_2:220150715-220151078:+|nuORF	REV__ENST00000336576.9_2_2:220150715-220151078:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.793212890625	2	478.792392	955.570232	0.15994	7.658E-05	-1.1093	-0.0005311	-0.94931	-0.00045452	478.7917117307407	83.32	2.5938	80.657	80.145	82.738	-2.6629					118	53	4	0	0	0	0.53885	1	6916	6916		49.442	5.3247	1	1612900	+		58738	24587	48460	48506	64428	64428					0.09066930965661868
VALWPGLGL	9	Unmodified	_VALWPGLGL_					0	0	0			REV__ENSG00000143222|ENST00000368003|UFC1	REV__ENSG00000143222|ENST00000368003|UFC1	MULTI-MSMS	OvCa9_classI_Rep3	3	463.2769470214844	2	463.278921	924.543289	-1.4838	-0.0006874	-3.6912	-0.00171	-5.1749	-0.0023974	463.27705250407473	92.796	1.1692	90.834	90.56	91.729	-1.9617					62	23	3	0	0	0	0.32242	1	5912	5912		60.404	11.193	1	373330	+		58739	19824	48461	48507	64429	64429					0.0779986714513825
VALWPGLGL	9	Unmodified	_VALWPGLGL_					0	0	0			REV__ENSG00000143222|ENST00000368003|UFC1	REV__ENSG00000143222|ENST00000368003|UFC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.2767639160156	2	463.278921	924.543289	-1.0708	-0.00049607	-3.6923	-0.0017106	-4.7631	-0.0022067	463.2770923414436	93.403	1.1588	90.896	90.614	91.772	-2.5072					46	24	3	0	0	0	0.32242	1	8164	8164		60.404	5.5091	1	356190	+		58740	19824	48461	48507	64430	64430					0.0779986714513825
VAMQARVT	8	Unmodified	_VAMQARVT_					0	0	0			REV__FNBP1|p.Q503Pfs*31|1|0.07|ENSG00000187239|chr9:129900470-129900471|-/GA|frameshift_variant	REV__FNBP1|p.Q503Pfs*31|1|0.07|ENSG00000187239|chr9:129900470-129900471|-/GA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	437.7259216308594	2	438.242012	874.469472	0.73717	0.00032306	4.3736	0.0019167	5.1107	0.0022397	438.2448782033361	58.794	0.15697	58.794	58.655	58.812	0					5	3	2	0	0	0	0.028476	1	5014	5014		20.482	0	1	51813	+		58741	28140	48462	48508	64431	64431					0.027215757111662242
VANAIIHLF	9	Unmodified	_VANAIIHLF_					0	0	0		ENSG00000169442|ENST00000374213|CD52	ENSG00000169442|ENST00000374213|CD52	ENSG00000169442|ENST00000374213|CD52	MULTI-MSMS	OvCa99_classI_Rep5	1	499.2951965332031	2	499.295102	996.575651	1.7976	0.00089755	-1.9936	-0.00099538	-0.19595	-9.7836E-05	499.29377074948854	120.16	0.27232	120.16	120	120.27	0					9	5	2	0	0	0	0.14739	1	13802	13802		85.359	30.465	1	346010			58742	7012	48463	48509	64432	64432					0.07722654548126684
VANGRIQSL	9	Unmodified	_VANGRIQSL_					0	0	0		ENSG00000065882|ENST00000698857|TBC1D1;nc|ENSG00000065882|Q86TI0|TBC1D1;nc|ENSG00000065882|Q86TI0-2|TBC1D1;ENST00000401554.5_1_4:38112345-38138953:+|nuORF;ENST00000407365.5_1_4:38113700-38138953:+|nuORF;ENST00000405444.3_1_4:38134403-38138953:+|nuORF	ENSG00000065882|ENST00000698857|TBC1D1	ENSG00000065882|ENST00000698857|TBC1D1	MULTI-MSMS	OvCa99_classI_Rep5	1	479.27850341796875	2	479.277441	956.540328	-0.34345	-0.00016461	-0.10844	-5.1973E-05	-0.45189	-0.00021658	479.2774607014744	55.497	0.77898	55.497	55.273	56.052	0					47	18	4	0	0	0	0.013607	1	4537	4537		157.33	27.646	1	3538900			58743	1338	48464	48510	64433	64433					0.06031992020336929
VANGSMHNI	9	Unmodified	_VANGSMHNI_					0	0	0			REV__nc|ENSG00000240038|P19961-2|AMY2B	REV__nc|ENSG00000240038|P19961-2|AMY2B	MULTI-MSMS	OvCa99_classI_Rep5	1	471.7264709472656	2	471.726726	941.4389	0.47579	0.00022444	-0.3909	-0.0001844	0.084899	4.0049E-05	471.72638331272515	45.353	0.68604	45.353	45.068	45.754	0					37	15	4	0	0	0	0.28934	1	3119	3119		64.207	10.856	1	2552300	+		58744	23436	48465	48511	64434	64434					-0.03416202673884072
VANPNSAIF	9	Unmodified	_VANPNSAIF_					0	0	0		nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	MULTI-MSMS	OvCa99_classI_Rep5	1	466.749755859375	2	466.745442	931.476331	2.6976	0.0012591	0.023441	1.0941E-05	2.721	0.00127	466.74535139231847	94.1	0.42351	94.1	93.883	94.306	0					22	9	3	0	0	0	0.27001	1	10224	10224		66.429	3.123	1	765970			58745	2570	48466	48512	64435	64435					0.007852118633763894
VANVERSIV	9	Unmodified	_VANVERSIV_					0	0	0			REV__tr|A0A553SMD7|A0A553SMD7_NIACITransportpermeaseproteinOS=NialliacirculansOX=1397GN=CEQ21_22320PE=3SV=1	REV__tr|A0A553SMD7|A0A553SMD7_NIACITransportpermeaseproteinOS=NialliacirculansOX=1397GN=CEQ21_22320PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	493.7862854003906	2	493.785099	985.555644	2.0784	0.0010263	0.064763	3.1979E-05	2.1432	0.0010583	493.78502512503246	90.526	0.75587	90.526	90.06	90.816	0					48	18	3	0	0	0	0.059253	1	9706	9706		113.41	6.4041	1	5823400	+		58746	30319	48467	48513	64436	64436					0.06228858817519267
VAPCAHAR	8	Unmodified	_VAPCAHAR_					0	0	0			REV__ENSG00000102195|ENST00000218316|GPR50	REV__ENSG00000102195|ENST00000218316|GPR50	MULTI-MSMS	OvCa99_classI_Rep5	1	412.7137145996094	2	412.713422	823.412291	2.1865	0.00090239	-0.94271	-0.00038907	1.2438	0.00051333	412.7129103733273	119.45	0.98956	119.45	119.19	120.18	0					46	23	3	0	0	0	0.75915	1	13715	13715		20.482	0	1	843960	+		58747	17543	48468	48514	64437	64437					-0.006478467745751004
VAPGKGILA	9	Unmodified	_VAPGKGILA_					0	0	0		nc|ENSG00000149925|P04075|ALDOA;ENSG00000149925|ENST00000642816|ALDOA;ENST00000567555.1_1_16:30077179-30078758:+|nuORF;ENST00000566012.1_1_16:30077179-30079547:+|nuORF;ENST00000564521.6_1_16:30075769-30079042:+|nuORF;ENST00000582381.1_1_17:26902119-26903857:-|nuORF;ENSG00000109107|ENST00000226253|ALDOC	nc|ENSG00000149925|P04075|ALDOA;ENST00000582381.1_1_17:26902119-26903857:-|nuORF	nc|ENSG00000149925|P04075|ALDOA	MSMS	OvCa9_classI_Rep3	3	413.2622375488281	2	413.263271	824.511988	NaN	NaN	NaN	NaN	NaN	NaN	NaN	58.129	1	55.003	54.503	55.503	-3.1264								0	0	0	0.24998	1	1785	1785		18.324	2.6882	1				58748	5491;2699	48469	48515	64438	64438					0.09271294111033512
VAPGKLDLPQ	10	Unmodified	_VAPGKLDLPQ_					0	0	0			REV__ENSG00000187678|ENST00000434127|SPRY4	REV__ENSG00000187678|ENST00000434127|SPRY4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.8209228515625	2	519.303124	1036.5917	1.7422	0.00090473	-3.3667	-0.0017483	-1.6245	-0.00084359	519.3016671371163	137.45	0.589	135.91	135.52	136.11	-1.5437					25	11	3	0	0	0	0.026849	1	13327	13327		40.778	11.629	1	15730	+		58749	22654	48470	48516	64439	64439					0.07486315994378856
VAPGKLDLPQ	10	Unmodified	_VAPGKLDLPQ_					0	0	0			REV__ENSG00000187678|ENST00000434127|SPRY4	REV__ENSG00000187678|ENST00000434127|SPRY4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	519.303124	1036.5917	-0.95152	-0.00049413	0.20475	0.00010633	-0.74677	-0.0003878	519.3033446469502	137.07	0.53665	135.99	135.71	136.24	-1.0858	-0.0027694	0.0006499	NaN	40.778	26	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21515	+		58750	22654	48470	48516							0.07486315994378856
VAPHGNAVPPV	11	Unmodified	_VAPHGNAVPPV_					0	0	0			REV__ENST00000467144.5_1_6:3298407-3324352:-|nuORF	REV__ENST00000467144.5_1_6:3298407-3324352:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.3281860351562	2	529.293091	1056.57163	0.54683	0.00028943	-4.2673	-0.0022586	-3.7205	-0.0019692	529.2906214691467	128.99	1.336	128.76	128.13	129.46	-0.22697					55	26	3	0	0	0	0.025496	1	12579	12579		49.442	10.189	1	36381	+		58751	26197	48471	48517	64440	64440					0.04560565054430299
VAPIKALR	8	Unmodified	_VAPIKALR_					0	0	0		ENSG00000185313|ENST00000449082|SCN10A	ENSG00000185313|ENST00000449082|SCN10A	ENSG00000185313|ENST00000449082|SCN10A	MULTI-MSMS	OvCa9_classI_Rep4_	4	434.2912902832031	2	434.292362	866.570172	0.63845	0.00027727	0.96231	0.00041792	1.6008	0.0006952	434.2919816887499	123.38	1.4847	122.02	121.31	122.79	-1.3666					75	29	4	0	0	0	0.73626	1	11692	11692		33.516	0	1	82753			58752	8247	48472	48518	64441	64441					0.13154975756310705
VAPIKALR	8	Unmodified	_VAPIKALR_					0	0	0		ENSG00000185313|ENST00000449082|SCN10A	ENSG00000185313|ENST00000449082|SCN10A	ENSG00000185313|ENST00000449082|SCN10A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	434.292362	866.570172	-0.43167	-0.00018747	0.25441	0.00011049	-0.17726	-7.6984E-05	434.29237887444947	121.75	1.2368	121.56	121.05	122.29	-0.19719	-0.25093	0.00089374	NaN	33.516	40	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56429			58753	8247	48472	48518							0.13154975756310705
VAPIKALR	8	Unmodified	_VAPIKALR_					0	0	0		ENSG00000185313|ENST00000449082|SCN10A	ENSG00000185313|ENST00000449082|SCN10A	ENSG00000185313|ENST00000449082|SCN10A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	434.292362	866.570172	1.8086	0.00078544	-1.9367	-0.00084108	-0.12812	-5.564E-05	434.29138621818595	122.88	1.2522	121.85	121.32	122.57	-1.0286	0.040146	-0.0010094	NaN	33.516	40	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75712			58754	8247	48472	48518							0.13154975756310705
VAPLASATEV	10	Unmodified	_VAPLASATEV_					0	0	0		nc|ENSG00000183169|Q3SYA9|POM121L1P	nc|ENSG00000183169|Q3SYA9|POM121L1P	nc|ENSG00000183169|Q3SYA9|POM121L1P	MULTI-SECPEP	OvCa9_classI_Rep3	3	479.28021240234375	2	479.266207	956.517862	-0.16165	-7.7471E-05	-0.26718	-0.00012805	-0.42883	-0.00020552	479.2661713252687	75.457	0.25902	73.046	72.969	73.228	-2.4106					7	4	2	0	0	0	0.026982	1	3830	3830		2.9294	0	1	13299			58755	15210	48473	48519	64442	64442					0.03786347832055981
VAPPLGRRVVF	11	Unmodified	_VAPPLGRRVVF_					0	0	0			REV__ENST00000598497.1_1_19:58598487-58598820:-|nuORF	REV__ENST00000598497.1_1_19:58598487-58598820:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	605.8712768554688	2	605.874582	1209.73461	-4.9831	-0.0030191	0.6461	0.00039145	-4.337	-0.0026277	605.874829866227	157.02	0.88571	156.79	156.54	157.42	-0.22696					68	24	4	0	0	0	0.70865	1	15980	15980		26.693	1.1189	1	101120	+		58756	27976	48474	48520	64443	64443					0.13813368176238328
VAPPLQLL	8	Unmodified	_VAPPLQLL_					0	0	0			REV__NYNRIN|p.A1061Lfs*9|1|0.04|ENSG00000205978|chr14:24414928-24414929|-/TCTTACAAGAACATTTTCCACTTGGT|frameshift_variant	REV__NYNRIN|p.A1061Lfs*9|1|0.04|ENSG00000205978|chr14:24414928-24414929|-/TCTTACAAGAACATTTTCCACTTGGT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	425.7751159667969	2	425.773471	849.53239	-0.95445	-0.00040638	4.1695	0.0017752	3.215	0.0013689	425.7751660668595	68.762	2.1455	66.142	65.721	67.866	-2.6203					132	42	5	0	0	0	0.75991	1	5473	5473		21.702	0	1	3515300	+		58757	29262	48475	48521	64444	64444					0.10160464770854105
VAQDGPGIW	9	Unmodified	_VAQDGPGIW_					0	0	0			REV__ENSG00000196440|ENST00000423738|ARMCX4	REV__ENSG00000196440|ENST00000423738|ARMCX4	MULTI-MSMS	OvCa99_classI_Rep5	1	471.7360534667969	2	471.737617	941.460681	-0.59968	-0.00028289	-2.6986	-0.001273	-3.2983	-0.0015559	471.73611069837017	37.553	0.64271	37.553	37.298	37.94	0					29	13	3	0	0	0	0.40667	1	2065	2065		51.335	5.3835	1	537020	+		58758	22826	48476	48522	64445	64445					-0.012390746536766528
VAQERSPVL	9	Unmodified	_VAQERSPVL_					0	0	0			REV__ENSG00000215529|ENST00000400522|EFCAB8	REV__ENSG00000215529|ENST00000400522|EFCAB8	MULTI-MSMS	OvCa9_classI_Rep3	3	499.78564453125	2	499.785099	997.555644	-0.41373	-0.00020678	0.037157	1.8571E-05	-0.37657	-0.0001882	499.785001315598	118.5	0.54613	117.47	117.19	117.73	-1.0271					28	10	3	0	0	0	0.46356	1	8966	8966		45.972	3.5761	1	170150	+		58759	23318	48477	48523	64446	64446					0.05676858817525954
VAQEWLNSP	9	Unmodified	_VAQEWLNSP_					0	0	0		nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.829345703125	2	522.261456	1042.50836	-1.6612	-0.00086759	0.88646	0.00046297	-0.77475	-0.00040462	522.2623615457761	106.91	0.78899	105.03	104.64	105.43	-1.8784					30	14	3	0	0	0	0.027433	1	9746	9746		54.776	19.624	1	32434			58760	2599	48478	48524	64447	64447					-0.011194204534831442
VAQEWLNSP	9	Unmodified	_VAQEWLNSP_					0	0	0		nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-MATCH	OvCa9_classI_Rep2	2		2	522.261456	1042.50836	-0.023761	-1.2409E-05	0.52066	0.00027192	0.4969	0.00025951	522.2613887426585	105.47	0.89775	105.04	104.65	105.55	-0.43642	0.0025821	-0.00017093	NaN	54.776	33	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20979			58761	2599	48478	48524							-0.011194204534831442
VAQPPGKETL	10	Unmodified	_VAQPPGKETL_					0	0	0		ENST00000474534.1_1_9:131798902-131809484:+|nuORF	ENST00000474534.1_1_9:131798902-131809484:+|nuORF	ENST00000474534.1_1_9:131798902-131809484:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	520.2921752929688	2	520.292756	1038.57096	-0.96898	-0.00050415	0.61629	0.00032065	-0.35268	-0.0001835	520.2929878067442	117.73	1.1913	117.58	117.19	118.38	-0.14754					43	23	2	0	0	0	0.64697	1	11304	11304		36.447	0.82846	1	211520			58762	12434	48479	48525	64448	64448					0.053217256147036096
VAQSEAPQV	9	Unmodified	_VAQSEAPQV_					0	0	0		ENST00000452761.1_1_2:110745136-110745940:-|nuORF	ENST00000452761.1_1_2:110745136-110745940:-|nuORF	ENST00000452761.1_1_2:110745136-110745940:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	464.7402038574219	2	464.740357	927.46616	-0.41282	-0.00019186	0.5406	0.00025124	0.12777	5.9382E-05	464.74051895425464	41.442	0.65916	41.442	41.149	41.809	0					36	14	4	0	0	0	0.2422	1	2606	2606		69.628	7.9363	1	1210200			58763	12058	48480	48526	64449	64449					-0.0004739586186133238
VAQWNIGSL	9	Unmodified	_VAQWNIGSL_					0	0	0		nc|ENSG00000127663|O94953-2|KDM4B;nc|ENSG00000127663|O94953|KDM4B;ENSG00000127663|ENST00000159111|KDM4B	nc|ENSG00000127663|O94953-2|KDM4B	nc|ENSG00000127663|O94953-2|KDM4B	MULTI-MSMS	OvCa99_classI_Rep5	1	494.2640686035156	2	494.266542	986.51853	-0.42646	-0.00021079	-3.1623	-0.001563	-3.5887	-0.0017738	494.2646612871469	41.065	0.9283	41.065	40.838	41.766	0					31	20	2	0	0	0	0.3076	1	2538	2538		62.107	10.915	1	642330			58764	3842	48481	48527	64450	64450					0.024731872717552505
VARGFRGL	8	Unmodified	_VARGFRGL_					0	0	0			REV__tr|A0A7D6ZFG6|A0A7D6ZFG6_9CLOTTrkAfamilypotassiumuptakeproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14810PE=4SV=1	REV__tr|A0A7D6ZFG6|A0A7D6ZFG6_9CLOTTrkAfamilypotassiumuptakeproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14810PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	438.2646789550781	2	438.264136	874.51372	1.7194	0.00075355	-3.1424	-0.0013772	-1.423	-0.00062366	438.26265014927577	66.907	1.2325	66.907	66.372	67.604	0					63	30	3	0	0	0	0.73288	1	6220	6220		35.201	0	1	3607700	+		58765	31970	48482	48528	64451	64451					0.07144347919643224
VARNVLGL	8	Unmodified	_VARNVLGL_					0	0	0			REV__ENST00000221086.7_1_8:11142021-11142231:+|nuORF	REV__ENST00000221086.7_1_8:11142021-11142231:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	421.2662353515625	2	421.266345	840.518136	-1.2006	-0.00050579	0.72037	0.00030347	-0.48026	-0.00020232	421.26666345540275	40.83	2.0659	37.876	37.421	39.487	-2.9541					132	39	5	0	0	0	0.65582	1	1783	1783		52.299	0	1	2205900	+		58766	23745	48483	48529	64452	64452					0.09149812342559471
VARPLSTAL	9	Unmodified	_VARPLSTAL_					0	0	0		ENSG00000004779|ENST00000007516|NDUFAB1	ENSG00000004779|ENST00000007516|NDUFAB1	ENSG00000004779|ENST00000007516|NDUFAB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	464.28521728515625	2	464.284734	926.554916	-0.37207	-0.00017275	0.22751	0.00010563	-0.14456	-6.7118E-05	464.2847085180901	74.835	1.3058	71.605	71.192	72.498	-3.2308					62	26	3	0	0	0	0.11471	1	5871	5871		93.195	13.744	1	501900			58767	832	48484	48530	64453	64453					0.08870064168456793
VARPLSTAL	9	Unmodified	_VARPLSTAL_					0	0	0		ENSG00000004779|ENST00000007516|NDUFAB1	ENSG00000004779|ENST00000007516|NDUFAB1	ENSG00000004779|ENST00000007516|NDUFAB1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	464.284734	926.554916	-0.38583	-0.00017913	0.25001	0.00011608	-0.13581	-6.3056E-05	464.28470900904	73.779	1.469	71.379	70.636	72.105	-2.3999	-0.016307	4.3024E-05	NaN	93.195	78	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	167290			58768	832	48484	48530							0.08870064168456793
VARPLSTAL	9	Unmodified	_VARPLSTAL_					0	0	0		ENSG00000004779|ENST00000007516|NDUFAB1	ENSG00000004779|ENST00000007516|NDUFAB1	ENSG00000004779|ENST00000007516|NDUFAB1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	464.284734	926.554916	-0.29303	-0.00013605	0.1192	5.5341E-05	-0.17384	-8.071E-05	464.28467451742534	73.69	0.99266	71.203	70.925	71.917	-2.4873	-0.19278	-7.8448E-05	NaN	93.195	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55544			58769	832	48484	48530							0.08870064168456793
VARQVALVE	9	Unmodified	_VARQVALVE_					0	0	0		ENSG00000139567|ENST00000388922|ACVRL1	ENSG00000139567|ENST00000388922|ACVRL1	ENSG00000139567|ENST00000388922|ACVRL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.31134033203125	2	492.795466	983.57638	0.25911	0.00012769	3.5472	0.0017481	3.8063	0.0018757	492.797091375477	161.97	0.46039	161.97	161.72	162.18	0					15	8	2	0	0	0	0.027462	1	18988	18988		32.812	0	1	55077			58770	4783	48485	48531	64454	64454					0.08393449197183145
VARRAVWEF	9	Unmodified	_VARRAVWEF_					0	0	0			REV__nc|ENSG00000134109|Q92611-2|EDEM1	REV__nc|ENSG00000134109|Q92611-2|EDEM1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3155517578125	2	567.314358	1132.61416	2.0704	0.0011746	-0.40446	-0.00022945	1.666	0.00094513	567.3139739099872	57.536	1.95	54.41	53.788	55.738	-3.1264					89	52	3	0	0	0	0.68424	1	1740	1740		21.96	0	1	66904	+		58771	19174	48486	48532	64455	64455					0.053159601826337166
VARSSAVLSTV	11	Unmodified	_VARSSAVLSTV_					0	0	0			REV__ENSG00000181143|ENST00000397910|MUC16	REV__ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3156127929688	2	545.316763	1088.61897	-1.7047	-0.0009296	1.3026	0.00071033	-0.40209	-0.00021926	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.71191	1	14379	14379		25.574	4.6271	1	202430	+		58772	22219	48487	48533	64456	64456					0.07820799534761136
VARWLYRLT	9	Unmodified	_VARWLYRLT_					0	0	0			REV__ENSG00000182687|ENST00000329003|GALR2	REV__ENSG00000182687|ENST00000329003|GALR2	MULTI-MSMS	OvCa9_classI_Rep3	3	589.34423828125	2	589.345658	1176.67676	-5.1334	-0.0030254	0.48454	0.00028556	-4.6489	-0.0027398	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.67509	1	12812	12812		23.042	0	1	589610	+		58773	22312	48488	48534	64457	64457					0.09549106250847217
VARYRNLN	8	Unmodified	_VARYRNLN_					0	0	0		ENSG00000107140|ENST00000336395|TESK1	ENSG00000107140|ENST00000336395|TESK1	ENSG00000107140|ENST00000336395|TESK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.3004150390625	2	503.283057	1004.55156	-0.23074	-0.00011613	2.4077	0.0012118	2.177	0.0010956	503.28432307664224	115.82	0.49471	114.42	114.07	114.56	-1.3977					15	9	2	0	0	0	0.028476	1	10797	10797		33.516	0	1	21931			58774	2588	48489	48535	64458	64458					0.04946814114452991
VASEHSNS	8	Unmodified	_VASEHSNS_					0	0	0		nc|ENSG00000215864|P0C2Y1|NBPF7P	nc|ENSG00000215864|P0C2Y1|NBPF7P	nc|ENSG00000215864|P0C2Y1|NBPF7P	MULTI-MSMS	OvCa99_classI_Rep5	1	415.68414306640625	2	415.685581	829.35661	2.4337	0.0010117	-4.0429	-0.0016806	-1.6092	-0.00066892	415.68384061000364	127.99	0.46576	127.99	127.72	128.18	0					15	9	2	0	0	0	0.74679	1	14832	14832		28.254	0	1	93945			58775	15319	48490	48536	64459	64459					-0.06489401481178447
VASFPKKQE	9	Unmodified	_VASFPKKQE_					0	0	0		ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	MULTI-MSMS	OvCa99_classI_Rep5	1	517.287353515625	2	517.287474	1032.5604	-1.3454	-0.00069593	0.41006	0.00021212	-0.93529	-0.00048381	517.2876353263929	34.748	1.2621	34.748	34.351	35.614	0					85	26	6	0	0	0	0.046778	2	1708	1687;1708		120.87	25.053	1	10038000			58776	2919	48491	48537	64460;64461	64461					0.04541742960304873
VASFPKKQE	9	Unmodified	_VASFPKKQE_					0	0	0		ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	ENSG00000112695|ENST00000684430|COX7A2	MULTI-MSMS	OvCa99_classI_Rep5	1	517.287841796875	2	517.287474	1032.5604	-1.0484	-0.00054233	1.1022	0.00057016	0.053786	2.7823E-05	517.2878506586209	39.844	0.6174	39.844	39.63	40.247	0					37	13	4	0	0	0	0.094791	1	2375	2375		98.582	2.7668	1	1457800			58777	2919	48491	48537	64462	64462					0.04541742960304873
VASILMEQEQT	11	Unmodified	_VASILMEQEQT_					0	0	0		PLCE1|p.M1919Hfs*27|1|0.04|ENSG00000138193|chr10:94306554-94306555|-/T|frameshift_variant;ENSG00000138193|ENST00000371380|PLCE1;nc|ENSG00000138193|Q9P212-2|PLCE1	PLCE1|p.M1919Hfs*27|1|0.04|ENSG00000138193|chr10:94306554-94306555|-/T|frameshift_variant;nc|ENSG00000138193|Q9P212-2|PLCE1	PLCE1|p.M1919Hfs*27|1|0.04|ENSG00000138193|chr10:94306554-94306555|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	624.83154296875	2	624.810653	1247.60675	-0.89437	-0.00055881	-4.1083	-0.0025669	-5.0027	-0.0031257	624.8077542544187	93.8	1.3866	92.7	92.122	93.509	-1.0995					50	26	3	0	0	0	0.025615	1	8359	8359		58.246	1.614	1	79759			58778	4669;15043	48492	48538	64463	64463					-0.007146049906168628
VASILMEQEQT	11	Unmodified	_VASILMEQEQT_					0	0	0		PLCE1|p.M1919Hfs*27|1|0.04|ENSG00000138193|chr10:94306554-94306555|-/T|frameshift_variant;ENSG00000138193|ENST00000371380|PLCE1;nc|ENSG00000138193|Q9P212-2|PLCE1	PLCE1|p.M1919Hfs*27|1|0.04|ENSG00000138193|chr10:94306554-94306555|-/T|frameshift_variant;nc|ENSG00000138193|Q9P212-2|PLCE1	PLCE1|p.M1919Hfs*27|1|0.04|ENSG00000138193|chr10:94306554-94306555|-/T|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	624.810653	1247.60675	-0.953	-0.00059545	-4.4471	-0.0027786	-5.4001	-0.003374	624.8076560462621	95.159	0.90195	92.69	92.41	93.312	-2.4685	-0.0021308	0.00025436	NaN	58.246	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118370			58779	4669;15043	48492	48538							-0.007146049906168628
VASLAGHSV	9	Unmodified	_VASLAGHSV_					0	0	0		ENST00000543164.5_1_12:6602847-6602940:-|nuORF	ENST00000543164.5_1_12:6602847-6602940:-|nuORF	ENST00000543164.5_1_12:6602847-6602940:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	420.2413330078125	2	420.732335	839.450116	-0.51961	-0.00021861	2.0089	0.00084522	1.4893	0.0006266	420.7330463097697	59.035	0.89698	55.643	55.4	56.297	-3.392					23	17	2	0	0	0	0.027279	1	3949	3949		60.972	15.02	1	42965			58780	13489	48493	48539	64464	64464					0.023969426919165926
VASVMRTEL	9	Oxidation (M)	_VASVM(Oxidation (M))RTEL_		VASVM(1)RTEL		VASVM(74)RTEL	0	0	1			REV__ENST00000430114.1_1_1:202827276-202830656:-|nuORF	REV__ENST00000430114.1_1_1:202827276-202830656:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.2696533203125	2	511.270967	1020.52738	-0.47461	-0.00024266	-2.7769	-0.0014198	-3.2516	-0.0016624	511.2693055881392	89.061	1.1349	86.458	86.237	87.371	-2.6027					61	22	3	0	0	0	0.21231	1	7627	7627		74.255	13.961	1	494480	+		58781	25709	48494	48540	64465	64465		579			0.01793792845921871
VATACASYIA	10	Unmodified	_VATACASYIA_					0	0	0			REV__TIAM1|p.H543Y|1|0.07|ENSG00000156299|chr21:31225908-31225908|G/A|missense_variant	REV__TIAM1|p.H543Y|1|0.07|ENSG00000156299|chr21:31225908-31225908|G/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	484.2698059082031	2	485.239135	968.463718	-0.91342	-0.00044323	0.72101	0.00034986	-0.19241	-9.3366E-05	485.2393102132467	49.341	0.39494	46.58	46.424	46.819	-2.7603					11	7	2	0	0	0	0.026665	1	3121	3121		34.173	0	1	13297	+		58782	29499	48495	48541	64466	64466					-0.021775675911726466
VATEGSREL	9	Unmodified	_VATEGSREL_					0	0	0		ENSG00000108771|ENST00000251642|DHX58;ENST00000586522.5_1_17:40255624-40263910:-|nuORF	ENSG00000108771|ENST00000251642|DHX58	ENSG00000108771|ENST00000251642|DHX58	MULTI-MSMS	OvCa99_classI_Rep5	1	481.2510681152344	2	481.251089	960.487624	-0.093071	-4.479E-05	-0.19644	-9.4536E-05	-0.28951	-0.00013933	481.25091264103446	43.035	0.89791	43.035	42.796	43.694	0					50	20	4	0	0	0	0.10502	1	2801	2801		95.815	1.8087	1	3269500			58783	2672	48496	48542	64467	64467					0.005799891668516466
VATEKAVEL	9	Unmodified	_VATEKAVEL_					0	0	0		ENST00000461139.5_1_3:53259774-53265639:-|nuORF;ENSG00000163931|ENST00000462138|TKT;nc|ENSG00000163931|P29401-2|TKT;ENST00000460243.1_1_3:53262881-53263452:-|nuORF;ENST00000469678.1_1_3:53259917-53265542:-|nuORF;ENST00000460343.5_1_3:53261754-53265639:-|nuORF	ENST00000461139.5_1_3:53259774-53265639:-|nuORF	ENST00000461139.5_1_3:53259774-53265639:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	480.2792053222656	2	480.274032	958.533512	0.4655	0.00022357	-0.58755	-0.00028219	-0.12205	-5.8617E-05	480.27360489569963	63.549	0.51542	63.549	63.257	63.773	0					35	12	4	0	0	0	0.2077	1	5711	5711		75.043	6.2565	1	5961900			58784	6380	48497	48543	64468	64468					0.05258634349092972
VATGKKKA	8	Unmodified	_VATGKKKA_					0	0	0			REV__tr|A0A7D6ZW07|A0A7D6ZW07_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17125PE=4SV=1	REV__tr|A0A7D6ZW07|A0A7D6ZW07_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17125PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	402.5741271972656	2	401.760895	801.507237	1.0667	0.00042856	-1.1646	-0.0004679	-0.097912	-3.9337E-05	401.7603459527977	47.143	0.69351	44.433	44.142	44.836	-2.7097					17	13	2	0	0	0	0.028476	1	2893	2893		24.203	17.467	1	8362.4	+		58785	32269	48498	48544	64469	64469					0.09854409968272648
VATRTRLALV	10	Unmodified	_VATRTRLALV_					0	0	0			REV__ENST00000514928.1_1_17:48447708-48450531:-|nuORF	REV__ENST00000514928.1_1_17:48447708-48450531:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.3272094726562	2	550.35094	1098.68733	1.047	0.00057621	3.3672	0.0018532	4.4142	0.0024294	550.352922381164	86.705	0.19517	84.078	83.957	84.152	-2.6269					5	3	2	0	0	0	0.026523	1	7350	7350		68.787	10.557	1	9587.1	+		58786	17904	48499	48545	64470	64470					0.1419308890526736
VATVSEKSRI	10	Unmodified	_VATVSEKSRI_					0	0	0		nc|ENSG00000130779|P30622-2|CLIP1;nc|ENSG00000130779|P30622-1|CLIP1;ENSG00000130779|ENST00000620786|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	nc|ENSG00000130779|P30622-2|CLIP1	MULTI-MSMS	OvCa9_classI_Rep2	2	545.31591796875	2	545.316763	1088.61897	-1.7047	-0.0009296	1.3026	0.00071033	-0.40209	-0.00021926	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.762	1	14302	14302		23.523	2.5758	1	202430			58787	4015	48500	48546	64471	64471					0.07820799534783873
VATVVMLGIF	10	Unmodified	_VATVVMLGIF_					0	0	0		tr|A0A7D6VWQ7|A0A7D6VWQ7_9CLOTVanWfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05110PE=4SV=1	tr|A0A7D6VWQ7|A0A7D6VWQ7_9CLOTVanWfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05110PE=4SV=1	tr|A0A7D6VWQ7|A0A7D6VWQ7_9CLOTVanWfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05110PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.7849731445312	2	525.306821	1048.59909	-0.65334	-0.0003432	-1.8661	-0.00098027	-2.5194	-0.0013235	525.3077249235783	102.82	0.78816	100.62	100.15	100.94	-2.1994					22	14	3	0	0	0	0.026822	1	9248	9248		30.504	0	1	23671			58788	35257	48501	48547	64472	64472					0.07673332270428546
VAVELIAPG	9	Unmodified	_VAVELIAPG_					0	0	0			REV__ENST00000564227.5_1_16:1833324-1833408:+|nuORF	REV__ENST00000564227.5_1_16:1833324-1833408:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	434.7586669921875	2	434.760561	867.506569	-1.3377	-0.00058158	-1.6289	-0.00070818	-2.9666	-0.0012898	434.7597358333452	139.11	1.8707	138.05	137.63	139.51	-1.0595					91	37	4	0	0	0	0.64339	1	11485	11485		26.796	1.3459	1	610970	+		58789	27666	48502	48548	64473	64473					0.06751570528570028
VAVGVRKGSE	10	Unmodified	_VAVGVRKGSE_					0	0	0			REV__ENSG00000198862|ENST00000361371|LTN1	REV__ENSG00000198862|ENST00000361371|LTN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.2899475097656	2	501.290548	1000.56654	1.3674	0.00068548	-1.5595	-0.00078175	-0.19204	-9.6267E-05	501.2895121117765	137.98	2.3901	136.45	135.78	138.17	-1.5284					99	50	3	0	0	0	0.74374	1	13386	13386		25.574	0	1	64432	+		58790	23081	48503	48549	64474	64474					0.06628261191804086
VAVKNHNPD	9	Unmodified	_VAVKNHNPD_					0	0	0		ENST00000462859.5_1_10:124608765-124615222:-|nuORF;ENSG00000213185|ENST00000368898|FAM24B;ENSG00000203795|ENST00000368894|FAM24A	ENST00000462859.5_1_10:124608765-124615222:-|nuORF	ENST00000462859.5_1_10:124608765-124615222:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.26739501953125	2	497.259248	992.503943	0.081854	4.0703E-05	4.2733	0.0021249	4.3552	0.0021657	497.2611163086616	56.829	0.55967	53.484	53.273	53.832	-3.3449					15	10	2	0	0	0	0.027456	1	3655	3655		38.806	0	1	20369			58791	8934	48504	48550	64475	64475					0.007391151236106452
VAVKTSAKKDS	11	Unmodified	_VAVKTSAKKDS_					0	0	0		nc|ENSG00000173406|O75553-3|DAB1;nc|ENSG00000173406|O75553-4|DAB1;nc|ENSG00000173406|O75553-5|DAB1;ENSG00000173406|ENST00000371236|DAB1;nc|ENSG00000173406|O75553|DAB1;nc|ENSG00000173406|O75553-2|DAB1	nc|ENSG00000173406|O75553-3|DAB1	nc|ENSG00000173406|O75553-3|DAB1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3297119140625	2	567.32987	1132.64519	-2.3399	-0.0013275	2.1766	0.0012349	-0.16324	-9.2608E-05	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.7046	1	14733	14733		28.081	1.3886	1	241060			58792	7373	48505	48551	64476	64476					0.08417068706262398
VAVLRLRVQ	9	Unmodified	_VAVLRLRVQ_					0	0	0			REV__nc|ENSG00000214357|A8MQ27-3|NEURL1B	REV__nc|ENSG00000214357|A8MQ27-3|NEURL1B	MULTI-MSMS	OvCa99_classI_Rep5	1	527.3514404296875	2	527.3482	1052.68185	0.3087	0.00016279	0.61603	0.00032486	0.92473	0.00048766	527.347506863759	161.45	0.35281	161.45	161.21	161.56	0					17	6	3	0	0	0	0.6653	1	18933	18933		24.203	1.1603	1	52141	+		58793	23289	48506	48552	64477	64477					0.1576141011346408
VAVMISNLK	9	Oxidation (M)	_VAVM(Oxidation (M))ISNLK_		VAVM(1)ISNLK		VAVM(100)ISNLK	0	0	1		ENSG00000235631|ENST00000434824|RNF148	ENSG00000235631|ENST00000434824|RNF148	ENSG00000235631|ENST00000434824|RNF148	MSMS	OvCa99_classI_Rep5	1	495.788818359375	2	495.786253	989.557952	NaN	NaN	NaN	NaN	NaN	NaN	NaN	71.876	1	71.876	71.376	72.376	0								0	0	0	0.024917	1	6972	6972		101.6	19.36	1				58794	9308	48507	48553	64478	64478		280			0.0627557123096949
VAVNGVHSL	9	Unmodified	_VAVNGVHSL_					0	0	0		ENSG00000116977|ENST00000366584|LGALS8;nc|ENSG00000116977|O00214-2|LGALS8;ENST00000489586.6_1_1:236706790-236711458:+|nuORF	ENSG00000116977|ENST00000366584|LGALS8	ENSG00000116977|ENST00000366584|LGALS8	MULTI-MSMS	OvCa99_classI_Rep5	1	448.25445556640625	2	448.253434	894.492316	0.63205	0.00028332	-0.70052	-0.00031401	-0.068467	-3.0691E-05	448.25293526199414	65.076	0.51225	65.076	64.834	65.347	0					25	12	3	0	0	0	0.030815	1	5953	5953		134.81	49.451	1	1310000			58795	3222	48508	48554	64479	64479					0.04084918100284085
VAVPWFPPAW	10	Unmodified	_VAVPWFPPAW_					0	0	0			REV__ENST00000296577.8_1_4:146019436-146019514:+|nuORF	REV__ENST00000296577.8_1_4:146019436-146019514:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	584.3157348632812	2	585.310752	1168.60695	0.30994	0.00018141	3.3032	0.0019334	3.6131	0.0021148	585.8148172310601	35.561	0.59949	32.712	32.391	32.99	-2.849					15	11	2	0	0	0	0.026839	1	1114	1114		26.796	0	1	16733	+		58796	24204	48509	48555	64480	64480					0.029392275822146985
VAVRFNNAR	9	Unmodified	_VAVRFNNAR_					0	0	0		tr|A0A553SL92|A0A553SL92_NIACIPantothenatesynthetaseOS=NialliacirculansOX=1397GN=panCPE=3SV=1	tr|A0A553SL92|A0A553SL92_NIACIPantothenatesynthetaseOS=NialliacirculansOX=1397GN=panCPE=3SV=1	tr|A0A553SL92|A0A553SL92_NIACIPantothenatesynthetaseOS=NialliacirculansOX=1397GN=panCPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7803344726562	2	523.796332	1045.57811	-0.98547	-0.00051619	3.3186	0.0017383	2.3332	0.0012221	524.3006548321737	42.379	0.16678	42.379	42.286	42.453	0					5	3	2	0	0	0	0.027462	1	2712	2712		45.952	1.8352	1	43513			58797	33698	48510	48556	64481	64481					0.05714503005788174
VAVTRAKAL	9	Unmodified	_VAVTRAKAL_					0	0	0		ENSG00000155363|ENST00000369645|MOV10;ENST00000468624.5_1_1:113242306-113242605:+|nuORF;ENST00000494319.1_1_1:113242363-113243003:+|nuORF	ENSG00000155363|ENST00000369645|MOV10	ENSG00000155363|ENST00000369645|MOV10	MULTI-MSMS	OvCa99_classI_Rep5	1	464.80084228515625	2	464.800552	927.58655	-0.69265	-0.00032194	0.7164	0.00033298	0.023752	1.104E-05	464.80065555749513	41.873	0.60498	41.873	41.637	42.242	0					26	13	3	0	0	0	0.24951	1	2654	2654		68.787	0.30212	1	348620			58798	5781	48511	48557	64482	64482					0.11986056922410171
VAYGKVGTKAI	11	Unmodified	_VAYGKVGTKAI_					0	0	0		tr|A0A7D7A192|A0A7D7A192_9CLOTProbablemultidrugresistanceproteinNorMOS=ClostridiumintestinaleOX=36845GN=HZF06_14300PE=4SV=1	tr|A0A7D7A192|A0A7D7A192_9CLOTProbablemultidrugresistanceproteinNorMOS=ClostridiumintestinaleOX=36845GN=HZF06_14300PE=4SV=1	tr|A0A7D7A192|A0A7D7A192_9CLOTProbablemultidrugresistanceproteinNorMOS=ClostridiumintestinaleOX=36845GN=HZF06_14300PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8294067382812	2	553.832049	1105.64954	-2.2198	-0.0012294	-1.4062	-0.0007788	-3.626	-0.0020082	553.8311075714116	139.08	3.9663	138.02	135.98	139.95	-1.0595					202	80	4	0	0	0	0.69455	1	11353	11353		31.53	4.7337	1	74733			58799	36030	48512	48558	64483	64483					0.10094577919812764
VAYNKNIND	9	Unmodified	_VAYNKNIND_					0	0	0		ENSG00000080839|ENST00000373664|RBL1;nc|ENSG00000080839|P28749-2|RBL1	ENSG00000080839|ENST00000373664|RBL1	ENSG00000080839|ENST00000373664|RBL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.7891845703125	2	525.764363	1049.51417	2.1233	0.0011163	3.8953	0.002048	6.0186	0.0031644	525.7660237319196	84.717	0.70111	84.717	84.303	85.004	0					31	16	3	0	0	0	0.027441	1	8803	8803		55.504	13.108	1	435980			58800	1644	48513	48559	64484	64484					-0.008603219418091612
VCAIMIEA	8	Unmodified	_VCAIMIEA_					0	0	0		tr|A0A7D7A1N2|A0A7D7A1N2_9CLOTAcetylornithineaminotransferaseOS=ClostridiumintestinaleOX=36845GN=argDPE=3SV=1	tr|A0A7D7A1N2|A0A7D7A1N2_9CLOTAcetylornithineaminotransferaseOS=ClostridiumintestinaleOX=36845GN=argDPE=3SV=1	tr|A0A7D7A1N2|A0A7D7A1N2_9CLOTAcetylornithineaminotransferaseOS=ClostridiumintestinaleOX=36845GN=argDPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	424.911376953125	2	425.214075	848.413596	-0.81088	-0.0003448	0.69228	0.00029437	-0.1186	-5.043E-05	425.2153013934327	65.916	0.14692	62.431	62.325	62.472	-3.4854					4	2	2	0	0	0	0.028476	1	4765	4765		20.482	8.9708	1	17798			58801	36044	48514	48560	64485	64485					-0.016673935206767965
VCARHRSLF	9	Unmodified	_VCARHRSLF_					0	0	0			REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B	REV__nc|ENSG00000135436|Q8IYM0-2|FAM186B	MULTI-MSMS	OvCa99_classI_Rep5	1	544.7936401367188	2	544.792735	1087.57092	2.2483	0.0012249	-0.83696	-0.00045597	1.4113	0.00076889	544.7920843844432	100.51	1.627	100.51	99.856	101.48	0					84	38	4	0	0	0	0.21395	1	11183	11183		73.975	2.679	1	15408000	+		58802	19288	48515	48561	64486	64486					0.030634471337180003
VCEAPAVRQI	10	Unmodified	_VCEAPAVRQI_					0	0	0		ENST00000427587.8_1_16:5141858-5143548:-|nuORF	ENST00000427587.8_1_16:5141858-5143548:-|nuORF	ENST00000427587.8_1_16:5141858-5143548:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8296508789062	2	543.292233	1084.56991	1.6653	0.00090476	-2.2499	-0.0012224	-0.5846	-0.00031761	543.2908102309718	87.403	0.65929	87.403	87.135	87.794	0					24	15	2	0	0	0	0.026681	1	9294	9294		36.447	0	1	658960			58803	11761	48516	48562	64487	64487					0.031011879741527082
VCFDIYLLI	9	Unmodified	_VCFDIYLLI_					0	0	0		ENST00000370982.3_1_1:68168948-68169056:-|nuORF	ENST00000370982.3_1_1:68168948-68169056:-|nuORF	ENST00000370982.3_1_1:68168948-68169056:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	549.7979736328125	2	549.798829	1097.5831	2.1569	0.0011859	-3.8021	-0.0020904	-1.6452	-0.00090452	549.7965023408917	84.535	2.3878	84.535	82.992	85.38	0					122	56	3	0	0	0	0.32337	1	8862	8862		60.294	5.5176	1	5325900			58804	10943	48517	48563	64488	64488					0.03821626033550274
VCFVLRSY	8	Unmodified	_VCFVLRSY_					0	0	0			REV__chr12:69359236-69362788|199|14.18|0.22|6.03|+|0|TE_info:HAL1,HAL1_dup16795,L1,LINE,donor,-,69358807,69359236|None,YEATS4|4	REV__chr12:69359236-69362788|199|14.18|0.22|6.03|+|0|TE_info:HAL1,HAL1_dup16795,L1,LINE,donor,-,69358807,69359236|None,YEATS4|4	MULTI-MSMS	OvCa9_classI_Rep3	3	493.76055908203125	2	493.760038	985.505523	-0.567	-0.00027996	2.7109	0.0013386	2.1439	0.0010586	493.7612320121243	133.32	1.1284	132.19	131.88	133.01	-1.1249					55	22	3	0	0	0	0.75241	1	10690	10690		25.45	1.2474	1	214690	+		58805	15890	48518	48564	64489	64489					0.012190328880137713
VCGISRNKY	9	Unmodified	_VCGISRNKY_					0	0	0		ENST00000592345.5_1_18:14084909-14085017:-|nuORF	ENST00000592345.5_1_18:14084909-14085017:-|nuORF	ENST00000592345.5_1_18:14084909-14085017:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.7415161132812	2	520.271301	1038.52805	-0.59898	-0.00031163	4.0877	0.0021267	3.4887	0.0018151	520.2740368287668	56.61	0.36251	56.61	56.382	56.744	0					11	8	2	0	0	0	0.027462	1	4685	4685		27.882	0	1	54666			58806	14134	48519	48565	64490	64490					0.010326322856371917
VCHIWFVLC	9	Unmodified	_VCHIWFVLC_					0	0	0		L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|188|1|anti-sense	L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|188|1|anti-sense	L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|188|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	560.2764282226562	2	560.277541	1118.54053	0.059706	3.3452E-05	-4.3922	-0.0024608	-4.3325	-0.0024274	560.2749568783789	106.86	2.1744	105.6	105.27	107.44	-1.267					110	42	3	0	0	0	0.61768	2	7564	7564;7576		29.842	0.69198	1	1807000			58807	14561	48520	48566	64491;64492	64491					-0.014000475756802189
VCHIWFVLC	9	Unmodified	_VCHIWFVLC_					0	0	0		L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|188|1|anti-sense	L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|188|1|anti-sense	L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|188|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.2767944335938	2	560.277541	1118.54053	-0.75477	-0.00042288	-3.2569	-0.0018247	-4.0116	-0.0022476	560.2756192604105	107.44	1.9511	105.56	105.22	107.17	-1.8785					106	38	4	0	0	0	0.42921	3	9796	9796;9806;9843		49.211	10.405	1	1542600			58808	14561	48520	48566	64493;64494;64495	64493					-0.014000475756802189
VCICLVGIVL	10	2 Carbamidomethyl (C)	_VC(Carbamidomethyl (C))IC(Carbamidomethyl (C))LVGIVL_	VC(1)IC(1)LVGIVL		VC(78)IC(78)LVGIVL		0	2	0			REV__ENST00000397885.2_1_9:2804184-2804304:-|nuORF	REV__ENST00000397885.2_1_9:2804184-2804304:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	573.3226318359375	2	573.324688	1144.63482	-1.9245	-0.0011034	0.81997	0.00047011	-1.1046	-0.00063327	573.3250796745639	102.5	1.4317	101.81	101.29	102.72	-0.68459					80	28	4	0	0	0	0.32406	1	9445	9445		77.944	14.638	1	398330	+		58809	25363	48521	48567	64496	64496	314;315				0.0682904645580038
VCICLVGIVL	10	2 Carbamidomethyl (C)	_VC(Carbamidomethyl (C))IC(Carbamidomethyl (C))LVGIVL_	VC(1)IC(1)LVGIVL		VC(91)IC(91)LVGIVL		0	2	0			REV__ENST00000397885.2_1_9:2804184-2804304:-|nuORF	REV__ENST00000397885.2_1_9:2804184-2804304:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	573.3223266601562	2	573.324688	1144.63482	-0.55529	-0.00031836	-0.6481	-0.00037157	-1.2034	-0.00068993	573.3241366548903	103.22	1.3117	101.79	101.4	102.71	-1.4347					74	24	4	0	0	0	0.22288	1	7139	7139		90.939	18.696	1	516010	+		58810	25363	48521	48567	64497	64497	314;315				0.0682904645580038
VCILLFPIT	9	Unmodified	_VCILLFPIT_					0	0	0			REV__ENSG00000180475|ENST00000316770|OR10Q1	REV__ENSG00000180475|ENST00000316770|OR10Q1	MULTI-MSMS	OvCa9_classI_Rep3	3	509.80364990234375	2	509.803914	1017.59328	-1.31	-0.00066782	0.8449	0.00043073	-0.46505	-0.00023708	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.64339	1	11024	11024		26.796	0	1	99460	+		58811	22175	48522	48568	64498	64498					0.08518233758763927
VCILSDKVRIT	11	Unmodified	_VCILSDKVRIT_					0	0	0			REV__nc|ENSG00000184979|Q9UMW8-2|USP18	REV__nc|ENSG00000184979|Q9UMW8-2|USP18	MULTI-SECPEP	OvCa9_classI_Rep4_	4	415.722900390625	3	416.244441	1245.71149	1.0484	0.00043639	1.2991	0.00054073	2.3474	0.00097711	416.2439618241189	68.07	0.24182	64.58	64.478	64.72	-3.4902					6	4	2	0	0	0	0.025806	1	5021	5021		16.53	11.644	1	8588	+		58812	22464	48523	48569	64499	64499					0.09846561276617649
VCIRLLLDI	9	Unmodified	_VCIRLLLDI_					0	0	0			REV__ENST00000461724.5_1_3:101546970-101547009:+|nuORF	REV__ENST00000461724.5_1_3:101546970-101547009:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.27001953125	2	529.325545	1056.63654	1.6976	0.00089857	1.6516	0.00087424	3.3492	0.0017728	529.3267099611423	110.18	0.17928	110.18	110.09	110.27	0					5	3	2	0	0	0	0.027462	1	12503	12503		29.15	0	1	84733	+		58813	26099	48524	48570	64500	64500					0.11048423536067276
VCIRLLLDI	9	Unmodified	_VCIRLLLDI_					0	0	0			REV__ENST00000461724.5_1_3:101546970-101547009:+|nuORF	REV__ENST00000461724.5_1_3:101546970-101547009:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	529.325545	1056.63654	0.80854	0.00042798	-1.1045	-0.00058462	-0.29591	-0.00015663	529.3248510808767	110.97	1.1506	109.87	109.55	110.7	-1.1038	-0.088235	-0.00067437	NaN	34.173	50	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84250	+		58814	26099	48524	48570							0.11048423536067276
VCIRLLLDI	9	Unmodified	_VCIRLLLDI_					0	0	0			REV__ENST00000461724.5_1_3:101546970-101547009:+|nuORF	REV__ENST00000461724.5_1_3:101546970-101547009:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	529.325545	1056.63654	-0.34345	-0.0001818	0.022448	1.1882E-05	-0.32101	-0.00016992	529.3253363813766	111.43	1.1058	109.92	109.63	110.74	-1.5111	-0.033421	0.00051863	NaN	34.173	49	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105240	+		58815	26099	48524	48570							0.11048423536067276
VCKGQNRDL	9	Unmodified	_VCKGQNRDL_					0	0	0			REV__nc|ENSG00000091831|P03372-4|ESR1	REV__nc|ENSG00000091831|P03372-4|ESR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.7826538085938	2	516.766383	1031.51821	-0.81873	-0.00042309	0.70294	0.00036326	-0.11579	-5.9835E-05	516.7666533791302	41.551	0.47778	41.551	41.375	41.853	0					19	10	3	0	0	0	0.027462	1	2629	2629		34.173	0	1	280970	+		58816	16070	48525	48571	64501	64501					0.003714442802447593
VCLAWVLDVQL	11	Unmodified	_VCLAWVLDVQL_					0	0	0			REV__nc|ENSG00000136270|Q969Z0-2|TBRG4	REV__nc|ENSG00000136270|Q969Z0-2|TBRG4	MULTI-MSMS	OvCa9_classI_Rep2	2	420.23486328125	3	420.233653	1257.67913	1.4258	0.00059916	1.3764	0.00057842	2.8022	0.0011776	420.23426080527724	91.222	3.0164	89.987	89.439	92.456	-1.2355					163	57	5	0	0	0	0.52474	2	8098	8098;8104		51.528	3.5682	1	1547900	+		58817	19373	48526	48572	64502;64503	64502					0.0605977387360781
VCLAWVLDVQL	11	Unmodified	_VCLAWVLDVQL_					0	0	0			REV__nc|ENSG00000136270|Q969Z0-2|TBRG4	REV__nc|ENSG00000136270|Q969Z0-2|TBRG4	MULTI-MSMS	OvCa9_classI_Rep3	3	420.23541259765625	3	420.233653	1257.67913	-0.48401	-0.0002034	2.9312	0.0012318	2.4472	0.0010284	420.2348652404624	92.172	2.6968	90.147	89.584	92.281	-2.0241					147	54	4	0	0	0	0.67712	1	5858	5858		37.508	1.0614	1	1866100	+		58818	19373	48526	48572	64504	64504					0.0605977387360781
VCLCNNETPN	10	Unmodified	_VCLCNNETPN_					0	0	0		nc|ENSG00000151746|Q96G01-4|BICD1;nc|ENSG00000151746|Q96G01-3|BICD1;ENSG00000151746|ENST00000652176|BICD1	nc|ENSG00000151746|Q96G01-4|BICD1	nc|ENSG00000151746|Q96G01-4|BICD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.7742309570312	2	553.733891	1105.45323	-0.84436	-0.00046755	1.0292	0.00056989	0.18482	0.00010234	553.7341850276496	34.888	0.65881	34.888	34.725	35.384	0					30	13	4	0	0	0	0.027021	1	1753	1753		21.96	10.449	1	362330			58819	5581	48527	48573	64505	64505					-0.09527918307890104
VCLDNIDI	8	Unmodified	_VCLDNIDI_					0	0	0			REV__tr|A0A7D6ZJD8|A0A7D6ZJD8_9CLOTPHPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10770PE=4SV=1	REV__tr|A0A7D6ZJD8|A0A7D6ZJD8_9CLOTPHPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10770PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.28411865234375	2	452.725861	903.437169	0.95399	0.0004319	-0.41354	-0.00018722	0.54045	0.00024468	452.7253535083165	47.907	0.50499	44.799	44.433	44.938	-3.1077					12	9	2	0	0	0	0.028476	1	2569	2569		63.306	22.734	1	14853	+		58820	32083	48528	48574	64506	64506					-0.018412564824984656
VCLFFVFLSL	10	Unmodified	_VCLFFVFLSL_					0	0	0		GABRQ|p.T557Ifs*5|1|0.04|ENSG00000268089|chrX:152653051-152653052|-/T|frameshift_variant;ENSG00000268089|ENST00000598523|GABRQ	GABRQ|p.T557Ifs*5|1|0.04|ENSG00000268089|chrX:152653051-152653052|-/T|frameshift_variant	GABRQ|p.T557Ifs*5|1|0.04|ENSG00000268089|chrX:152653051-152653052|-/T|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.2523193359375	2	594.330296	1186.64604	1.9992	0.0011882	-1.1631	-0.00069128	0.83612	0.00049693	594.3296831305074	117.44	0.5192	117.44	117.18	117.7	0					16	10	2	0	0	0	0.026797	1	13473	13473		55.504	0	1	200800			58821	9536	48529	48575	64507	64507					0.06018191821590335
VCLIPAFTET	10	Unmodified	_VCLIPAFTET_					0	0	0			REV__ALDH7A1|p.Y434C|1|0.17|ENSG00000164904|chr5:126552037-126552037|T/C|missense_variant	REV__ALDH7A1|p.Y434C|1|0.17|ENSG00000164904|chr5:126552037-126552037|T/C|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	547.283935546875	2	547.283543	1092.55253	0.82891	0.00045365	-0.5049	-0.00027633	0.32401	0.00017732	547.2828502072887	153.85	0.72375	153.85	153.5	154.22	0					19	14	2	0	0	0	0.46756	1	18022	18022		58.782	3.2778	1	56232	+		58822	15588	48530	48576	64508	64508					0.009958476484825951
VCLLLLPGPA	10	Unmodified	_VCLLLLPGPA_					0	0	0		ENST00000553772.5_1_14:31344123-31349661:+|nuORF;nc|ENSG00000100473|O43405-2|COCH;ENSG00000100473|ENST00000396618|COCH	ENST00000553772.5_1_14:31344123-31349661:+|nuORF	ENST00000553772.5_1_14:31344123-31349661:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.33502197265625	2	498.301539	994.588524	-1.7038	-0.00084899	-2.4195	-0.0012056	-4.1232	-0.0020546	498.2996795090578	125.12	0.36757	123.72	123.54	123.91	-1.3908					11	6	2	0	0	0	0.026839	1	11869	11869		12.959	0	1	9493.1			58823	2073	48531	48577	64509	64509					0.09101349616014431
VCLPNIKFKP	10	Unmodified	_VCLPNIKFKP_					0	0	0		nc|ENSG00000293416|E5RG02|PRSS46P	nc|ENSG00000293416|E5RG02|PRSS46P	nc|ENSG00000293416|E5RG02|PRSS46P	MULTI-SECPEP	OvCa9_classI_Rep4_	4	579.7858276367188	2	579.83882	1157.66309	-0.74887	-0.00043422	2.6897	0.0015596	1.9408	0.0011253	579.8403179531149	58.772	1.1471	55.38	55.15	56.297	-3.392					43	22	3	0	0	0	0.026915	1	3950	3950		27.882	5.9224	1	164020			58824	15406	48532	48578	64510	64510					0.09056112427379048
VCLPNIKFKP	10	Unmodified	_VCLPNIKFKP_					0	0	0		nc|ENSG00000293416|E5RG02|PRSS46P	nc|ENSG00000293416|E5RG02|PRSS46P	nc|ENSG00000293416|E5RG02|PRSS46P	MULTI-MATCH	OvCa9_classI_Rep2	2		2	579.83882	1157.66309	-0.92816	-0.00053819	3.0557	0.0017718	2.1276	0.0012336	579.8405939232499	58.155	0.95318	55.363	54.922	55.876	-2.792	-0.0086163	0.00031835	NaN	27.882	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46823			58825	15406	48532	48578							0.09056112427379048
VCLVIFHL	8	Unmodified	_VCLVIFHL_					0	0	0			REV__ENSG00000171502|ENST00000370571|COL24A1	REV__ENSG00000171502|ENST00000370571|COL24A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.2274475097656	2	472.275324	942.536095	0.16047	7.5785E-05	-0.14472	-6.8349E-05	0.015745	7.436E-06	472.2748850860452	31.111	0.57981	31.111	30.979	31.559	0					20	11	3	0	0	0	0.028476	1	1280	1280		10.185	0	1	234590	+		58826	21621	48533	48579	64511	64511					0.06252811273043335
VCLYLTVLL	9	Unmodified	_VCLYLTVLL_					0	0	0		ENST00000540865.5_1_11:62620891-62622014:-|nuORF	ENST00000540865.5_1_11:62620891-62622014:-|nuORF	ENST00000540865.5_1_11:62620891-62622014:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	518.8106079101562	2	518.809196	1035.60384	0.19699	0.0001022	2.8505	0.0014789	3.0475	0.0015811	518.8106079583728	97.496	1.0791	96.538	96.217	97.296	-0.95857					54	21	3	0	0	0	0.42057	1	8832	8832		50.025	0.48849	1	506810			58827	13458	48534	48580	64512	64512					0.08746216413192087
VCMIPVRGQ	9	Unmodified	_VCMIPVRGQ_					0	0	0		ENST00000484442.5_1_X:110339628-110339947:+|nuORF	ENST00000484442.5_1_X:110339628-110339947:+|nuORF	ENST00000484442.5_1_X:110339628-110339947:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.78289794921875	2	501.764797	1001.51504	-1.6752	-0.00084054	0.38266	0.000192	-1.2925	-0.00064853	501.764990616443	67.874	0.59115	65.213	64.842	65.433	-2.661					15	11	2	0	0	0	0.027462	1	5334	5334		40.573	23.208	1	25215			58828	12601	48535	48581	64513	64513					0.014344779019097587
VCNRVLLLV	9	Unmodified	_VCNRVLLLV_					0	0	0			REV__L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|274|2|anti-sense	REV__L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|274|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.8169555664062	2	514.817887	1027.62122	-1.3937	-0.00071748	-2.4955	-0.0012847	-3.8892	-0.0020022	514.8164939747522	118.6	0.93716	117.25	116.94	117.88	-1.3444					32	17	3	0	0	0	0.53957	1	11121	11121		38.806	1.647	1	169580	+		58829	16043	48536	48582	64514	64514					0.108515567388622
VCNVEQVRI	9	Unmodified	_VCNVEQVRI_					0	0	0		nc|ENSG00000276644|Q9UI36-4|DACH1;nc|ENSG00000276644|Q9UI36-3|DACH1;ENSG00000276644|ENST00000613252|DACH1;nc|ENSG00000276644|Q9UI36|DACH1	nc|ENSG00000276644|Q9UI36-4|DACH1	nc|ENSG00000276644|Q9UI36-4|DACH1	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.321533203125	2	530.284408	1058.55426	-2.2798	-0.0012089	1.4534	0.00077069	-0.82643	-0.00043824	530.2851325523636	38.272	0.44611	35.562	35.37	35.816	-2.7097					13	8	2	0	0	0	0.027461	1	1757	1757		58.782	9.2459	1	8980.4			58830	9580	48537	48583	64515	64515					0.02732901457125081
VCPLLTSL	8	Carbamidomethyl (C)	_VC(Carbamidomethyl (C))PLLTSL_	VC(1)PLLTSL		VC(75)PLLTSL		0	1	0		nc|ENSG00000125337|Q9UIL4-2|KIF25;ENSG00000125337|ENST00000643607|KIF25	nc|ENSG00000125337|Q9UIL4-2|KIF25	nc|ENSG00000125337|Q9UIL4-2|KIF25	MULTI-MSMS	OvCa9_classI_Rep4_	4	451.7552185058594	2	451.754421	901.494289	-1.4338	-0.00064771	1.5741	0.0007111	0.14032	6.3392E-05	451.75493826468085	108.11	1.2952	106.23	105.88	107.17	-1.8784					51	25	3	0	0	0	0.52992	1	9875	9875		74.517	10.309	1	146240			58831	3699	48538	48584	64516	64516	37				0.0396021079387765
VCPLLTSL	8	Carbamidomethyl (C)	_VC(Carbamidomethyl (C))PLLTSL_					0	1	0		nc|ENSG00000125337|Q9UIL4-2|KIF25;ENSG00000125337|ENST00000643607|KIF25	nc|ENSG00000125337|Q9UIL4-2|KIF25	nc|ENSG00000125337|Q9UIL4-2|KIF25	MULTI-MATCH	OvCa9_classI_Rep2	2		2	451.754421	901.494289	2.1274	0.00096105	-1.9841	-0.00089632	0.1433	6.4735E-05	451.75335825969097	106.86	1.1298	106.56	106.23	107.36	-0.30836	0.18239	-0.0013782	NaN	74.517	48	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103440			58832	3699	48538	48584			37				0.0396021079387765
VCPLLTSL	8	Carbamidomethyl (C)	_VC(Carbamidomethyl (C))PLLTSL_					0	1	0		nc|ENSG00000125337|Q9UIL4-2|KIF25;ENSG00000125337|ENST00000643607|KIF25	nc|ENSG00000125337|Q9UIL4-2|KIF25	nc|ENSG00000125337|Q9UIL4-2|KIF25	MULTI-MATCH	OvCa9_classI_Rep3	3		2	451.754421	901.494289	0.35184	0.00015895	-0.2375	-0.00010729	0.11434	5.1655E-05	451.75416100466805	107.6	1.4443	106.33	106	107.44	-1.267	-0.043094	0.00019984	NaN	74.517	66	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142390			58833	3699	48538	48584			37				0.0396021079387765
VCPVCGDRPLH	11	Unmodified	_VCPVCGDRPLH_					0	0	0		chr2:70921285-70958046|236|24.32|0.28|6.46|+|2|VAX2,VAX2|1	chr2:70921285-70958046|236|24.32|0.28|6.46|+|2|VAX2,VAX2|1	chr2:70921285-70958046|236|24.32|0.28|6.46|+|2|VAX2,VAX2|1	MULTI-MSMS	OvCa99_classI_Rep5	1	598.2874755859375	2	598.289168	1194.56378	0.23027	0.00013777	-3.9937	-0.0023894	-3.7635	-0.0022516	598.2865848540729	31.534	0.64523	31.534	31.361	32.006	0					21	12	3	0	0	0	0.64273	1	1303	1303		40.778	1.972	1	455960			58834	445	48539	48585	64517	64517					-0.025716535290257525
VCQEMVTEL	9	Unmodified	_VCQEMVTEL_					0	0	0		ENSG00000149403|ENST00000527524|GRIK4	ENSG00000149403|ENST00000527524|GRIK4	ENSG00000149403|ENST00000527524|GRIK4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.8136596679688	2	526.24356	1050.47257	-0.60894	-0.00032045	-0.54774	-0.00028824	-1.1567	-0.00060869	526.2427111327291	96.234	0.56129	93.808	93.659	94.22	-2.4256					13	10	2	0	0	0	0.027411	1	8502	8502		87.696	34.345	1	9691.8			58835	5456	48540	48586	64518	64518					-0.05064962017013386
VCRKSLYF	8	Unmodified	_VCRKSLYF_					0	0	0			REV__ENST00000478069.1_1_4:95290987-95291311:+|nuORF	REV__ENST00000478069.1_1_4:95290987-95291311:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.80426025390625	2	508.273312	1014.53207	0.048953	2.4882E-05	0.35633	0.00018111	0.40528	0.00020599	508.77447478733706	60.31	0.74446	56.88	56.65	57.395	-3.43					18	14	2	0	0	0	0.028476	1	4124	4124		23.037	3.0399	1	55669	+		58836	26403	48541	48587	64519	64519					0.02538721779342268
VCRLVKAVN	9	Unmodified	_VCRLVKAVN_					0	0	0			REV__nc|ENSG00000285053|Q15813-2|TBCE	REV__nc|ENSG00000285053|Q15813-2|TBCE	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.3054504394531	2	501.299862	1000.58517	-0.68069	-0.00034123	-3.9249	-0.0019676	-4.6056	-0.0023088	501.2977842449269	98.887	0.46483	96.562	96.33	96.795	-2.3253					15	8	2	0	0	0	0.027462	1	8802	8802		21.96	8.1846	1	132670	+		58837	29203	48542	48588	64520	64520					0.08490099562004616
VCSKRRRN	8	Unmodified	_VCSKRRRN_					0	0	0		DTX3L|p.L492Dfs*33|1|0.16|ENSG00000163840|chr3:122569562-122569563|TT/-|frameshift_variant	DTX3L|p.L492Dfs*33|1|0.16|ENSG00000163840|chr3:122569562-122569563|TT/-|frameshift_variant	DTX3L|p.L492Dfs*33|1|0.16|ENSG00000163840|chr3:122569562-122569563|TT/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.78680419921875	2	509.787984	1017.56142	-0.7461	-0.00038035	-1.3285	-0.00067724	-2.0746	-0.0010576	509.7871621199848	101.45	1.9722	99.184	98.792	100.76	-2.2665					54	38	3	0	0	0	0.6962	1	9096	9096		44.117	1.7207	1	508430			58838	763	48543	48589	64521	64521					0.05333678848205636
VCSVLRTIAPN	11	Unmodified	_VCSVLRTIAPN_					0	0	0			REV__L1MEd_dup8982|chr6:160099964-160100724:+|2.2579659231395626|0.0849947119753676|4.73|429.0|45|2|anti-sense	REV__L1MEd_dup8982|chr6:160099964-160100724:+|2.2579659231395626|0.0849947119753676|4.73|429.0|45|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	586.8233642578125	2	586.82644	1171.63833	-3.1356	-0.00184	-1.6799	-0.00098583	-4.8155	-0.0028259	586.8253279417393	148.8	1.3036	148.57	148.17	149.47	-0.22696					68	25	4	0	0	0	0.67529	1	15069	15069		37.812	7.4938	1	137330	+		58839	28445	48544	48590	64522	64522					0.05937432554060251
VCTWKSKN	8	Unmodified	_VCTWKSKN_					0	0	0		ROS1|p.T1963Dfs*18|1|0.07|ENSG00000047936|chr6:117319921-117319922|-/GGCATGTTTGAAGAAAAATGATTGCCTGATAGGTC|frameshift_variant;ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1	ROS1|p.T1963Dfs*18|1|0.07|ENSG00000047936|chr6:117319921-117319922|-/GGCATGTTTGAAGAAAAATGATTGCCTGATAGGTC|frameshift_variant	ROS1|p.T1963Dfs*18|1|0.07|ENSG00000047936|chr6:117319921-117319922|-/GGCATGTTTGAAGAAAAATGATTGCCTGATAGGTC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	482.27978515625	2	483.247295	964.480036	-0.92472	-0.00044687	2.2245	0.001075	1.2998	0.00062811	483.2481911079878	109.11	0.71167	107.39	107.02	107.73	-1.7256					20	13	2	0	0	0	0.028476	1	9999	9999		47.916	21.119	1	31953			58840	1153	48545	48591	64523	64523					-0.003624416344223391
VCVCVCVLLFL	11	Unmodified	_VCVCVCVLLFL_					0	0	0		ENST00000525141.1_11:93211864-93211963:-|nuORF	ENST00000525141.1_11:93211864-93211963:-|nuORF	ENST00000525141.1_11:93211864-93211963:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	404.2193603515625	3	404.21807	1209.63238	3.2514	0.0013143	-0.81488	-0.00032939	2.4365	0.00098489	404.2178648039015	90.477	4.4615	90.477	90.186	94.648	0					287	107	5	0	0	0	0.5466	1	9960	9960		49.536	4.5138	1	88373000			58841	13183	48546	48592	64524	64524					0.03594874726491071
VCVFLSHGE	9	Unmodified	_VCVFLSHGE_					0	0	0		ENSG00000138794|ENST00000265164|CASP6;nc|ENSG00000138794|P55212-2|CASP6	ENSG00000138794|ENST00000265164|CASP6	ENSG00000138794|ENST00000265164|CASP6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.30523681640625	2	495.739302	989.464052	2.9493	0.0014621	-1.9396	-0.00096153	1.0097	0.00050057	495.7380249140249	134.99	0.84128	133.44	133.16	134.01	-1.5437					29	16	3	0	0	0	0.027462	1	13107	13107		18.324	4.5491	1	37164			58842	4732	48547	48593	64525	64525					-0.03110147871313984
VCVFLSHGE	9	Unmodified	_VCVFLSHGE_					0	0	0		ENSG00000138794|ENST00000265164|CASP6;nc|ENSG00000138794|P55212-2|CASP6	ENSG00000138794|ENST00000265164|CASP6	ENSG00000138794|ENST00000265164|CASP6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	495.739302	989.464052	0.31573	0.00015652	0.4908	0.00024331	0.80653	0.00039983	495.7395002261354	133.93	0.58914	133.7	133.51	134.1	-0.22696	0.12829	0.0011665	NaN	18.324	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17827			58843	4732	48547	48593							-0.03110147871313984
VCVTEMVPLA	10	Carbamidomethyl (C)	_VC(Carbamidomethyl (C))VTEMVPLA_	VC(1)VTEMVPLA		VC(46)VTEMVPLA		0	1	0			REV__ENST00000377047.8_1_13:95056729-95057002:+|nuORF	REV__ENST00000377047.8_1_13:95056729-95057002:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	559.7822875976562	2	559.782853	1117.55115	-2.5577	-0.0014318	2.6164	0.0014646	0.058728	3.2875E-05	559.7841057030945	140.78	1.9736	139.75	139.43	141.41	-1.0339					83	39	3	0	0	0	0.56767	1	11637	11637		45.952	8.7928	1	163230	+		58844	25110	48548	48594	64526	64526	307				-0.002921097119042315
VCWTAHAII	9	Unmodified	_VCWTAHAII_					0	0	0		ENSG00000213937|ENST00000445369|CLDN9;ENSG00000184697|ENST00000328796|CLDN6	ENSG00000213937|ENST00000445369|CLDN9	ENSG00000213937|ENST00000445369|CLDN9	MULTI-MSMS	OvCa9_classI_Rep2	2	507.2657165527344	2	507.265487	1012.51642	0.14965	7.5915E-05	1.468	0.00074466	1.6176	0.00082058	507.26616198895925	86.781	2.5585	85.35	84.856	87.414	-1.4311					145	50	4	0	0	0	0.50066	1	7595	7595		42.474	1.6963	1	1141800			58845	8183	48549	48595	64527	64527					0.010664352623052764
VDADPHGIEI	10	Unmodified	_VDADPHGIEI_					0	0	0		nc|ENSG00000054796|Q9Y5K1-2|SPO11;ENSG00000054796|ENST00000371263|SPO11	nc|ENSG00000054796|Q9Y5K1-2|SPO11	nc|ENSG00000054796|Q9Y5K1-2|SPO11	MULTI-MSMS	OvCa99_classI_Rep5	1	533.2638549804688	2	533.264196	1064.51384	0.18193	9.7015E-05	-1.2354	-0.00065882	-1.0535	-0.0005618	533.2633611078462	45.18	0.56417	45.18	44.932	45.496	0					37	12	4	0	0	0	0.53885	1	3096	3096		49.442	10.189	1	1958500			58846	1214	48550	48596	64528	64528					-0.015837416616705013
VDAERRLTI	9	Unmodified	_VDAERRLTI_					0	0	0			REV__ENSG00000133422|ENST00000397641|MORC2	REV__ENSG00000133422|ENST00000397641|MORC2	MULTI-MSMS	OvCa9_classI_Rep2	2	536.807861328125	2	536.809105	1071.60366	0.23953	0.00012858	-0.72479	-0.00038907	-0.48525	-0.00026049	536.808594253858	65.887	1.3438	63.191	62.771	64.114	-2.6958					79	26	4	0	0	0	0.51865	1	5112	5112		40.778	2.9666	1	1324500	+		58847	19144	48551	48597	64529	64529					0.07071932737562747
VDAGFEARKAQ	11	Unmodified	_VDAGFEARKAQ_					0	0	0		ENST00000434735.6_1_12:109973723-109974035:+|nuORF	ENST00000434735.6_1_12:109973723-109974035:+|nuORF	ENST00000434735.6_1_12:109973723-109974035:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	596.3052978515625	2	596.309469	1190.60439	-1.7026	-0.0010153	-4.1067	-0.0024489	-5.8094	-0.0034642	596.3063733554482	51.837	3.4202	49.024	48.253	51.674	-2.8129					160	68	4	0	0	0	0.69081	1	3401	3401		32.812	0	1	554130			58848	11849	48552	48598	64530	64530					0.0167072738661318
VDARGRNQW	9	Unmodified	_VDARGRNQW_					0	0	0		tr|A0A553SQ31|A0A553SQ31_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	tr|A0A553SQ31|A0A553SQ31_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	tr|A0A553SQ31|A0A553SQ31_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3182373046875	2	551.281046	1100.54754	-0.67219	-0.00037057	-1.7974	-0.00099086	-2.4696	-0.0013614	551.280006899035	53.237	0.43242	53.237	52.956	53.389	0					16	9	2	0	0	0	0.02741	1	4235	4235		60.972	0	1	903000			58849	34112	48553	48599	64531	64531					0.0012872462073119095
VDARRGPLV	9	Unmodified	_VDARRGPLV_					0	0	0			REV__ENST00000486040.1_1_7:2274759-2277695:-|nuORF	REV__ENST00000486040.1_1_7:2274759-2277695:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.76507568359375	2	491.793258	981.571963	1.2184	0.00059921	-3.1101	-0.0015295	-1.8917	-0.00093032	491.79166962592774	81.673	0.20073	81.673	81.613	81.814	0					6	4	2	0	0	0	0.027441	1	8429	8429		55.504	30.054	1	124110	+		58850	18608	48554	48600	64532	64532					0.08043984774280943
VDAVLRNI	8	Unmodified	_VDAVLRNI_					0	0	0			REV__ENSG00000114737|ENST00000348721|CISH	REV__ENSG00000114737|ENST00000348721|CISH	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.2685852050781	2	450.269084	898.523616	-0.59426	-0.00026758	0.24146	0.00010872	-0.3528	-0.00015886	450.2691842813432	72.264	1.3123	68.808	68.364	69.676	-3.4563					84	26	5	0	0	0	0.62934	1	5569	5569		57.811	0	1	1672500	+		58851	18198	48555	48601	64533	64533					0.07029491134380805
VDCFQMANTV	10	Oxidation (M)	_VDCFQM(Oxidation (M))ANTV_		VDCFQM(1)ANTV		VDCFQM(53)ANTV	0	0	1			REV__tr|A0A553SQY8|A0A553SQY8_NIACIHADfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_00020PE=4SV=1	REV__tr|A0A553SQY8|A0A553SQY8_NIACIHADfamilyhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_00020PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	572.2451171875	2	572.244092	1142.47363	1.507	0.00086235	0.091015	5.2083E-05	1.598	0.00091443	572.2439466102973	111.1	1.1227	111.1	110.8	111.93	0					53	24	4	0	0	0	0.50999	1	12630	12630		52.937	8.8199	1	3022100	+		58852	30671	48556	48602	64534	64534		678			-0.091907476481083
VDCIRSSID	9	Unmodified	_VDCIRSSID_					0	0	0			REV__nc|ENSG00000144406|Q8N2C7-7|UNC80	REV__nc|ENSG00000144406|Q8N2C7-7|UNC80	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.7837829589844	2	504.244949	1006.47534	-0.42293	-0.00021326	2.6397	0.0013311	2.2168	0.0011178	504.24818216156325	54.281	1.3392	54.281	53.854	55.193	0					48	31	4	0	0	0	0.027461	1	4387	4387		32.812	0	1	411020	+		58853	19910	48557	48603	64535	64535					-0.02763370567822676
VDDARQLVL	9	Unmodified	_VDDARQLVL_					0	0	0			REV__ENST00000354752.5_1_9:99942307-99949763:-|nuORF	REV__ENST00000354752.5_1_9:99942307-99949763:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	514.7921142578125	2	514.790381	1027.56621	-1.2306	-0.00063352	4.247	0.0021863	3.0164	0.0015528	514.7926768309699	117.99	1.8353	117.84	117.39	119.22	-0.14755					94	36	4	0	0	0	0.27001	1	11335	11335		66.429	9.7082	1	124280	+		58854	24740	48558	48604	64536	64536					0.05352841471949432
VDDIIDVVIQ	10	Unmodified	_VDDIIDVVIQ_					0	0	0		tr|A0A553SGX2|A0A553SGX2_NIACIMagnesiumtransporterMgtEOS=NialliacirculansOX=1397GN=mgtEPE=3SV=1	tr|A0A553SGX2|A0A553SGX2_NIACIMagnesiumtransporterMgtEOS=NialliacirculansOX=1397GN=mgtEPE=3SV=1	tr|A0A553SGX2|A0A553SGX2_NIACIMagnesiumtransporterMgtEOS=NialliacirculansOX=1397GN=mgtEPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.8113403320312	2	564.810979	1127.6074	1.1343	0.00064069	-1.2378	-0.00069912	-0.10345	-5.8432E-05	564.8100500057338	109.48	1.6202	107.75	107.38	109	-1.7256					83	30	4	0	0	0	0.12609	1	10059	10059		107.01	19.311	1	731720			58855	33204	48559	48605	64537	64537					0.04870557720778379
VDDIKSINI	9	Unmodified	_VDDIKSINI_					0	0	0			REV__tr|A0A7D6ZIP8|A0A7D6ZIP8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07925PE=4SV=1	REV__tr|A0A7D6ZIP8|A0A7D6ZIP8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07925PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.7861022949219	2	508.784764	1015.55498	-0.50601	-0.00025745	-0.27633	-0.00014059	-0.78234	-0.00039804	508.78461024196775	67.921	1.2496	67.921	67.566	68.815	0					79	28	5	0	0	0	0.3249	1	6434	6434		60.118	0.18749	1	22094000	+		58856	32065	48560	48606	64538	64538					0.04782019377796587
VDDKKLERV	9	Unmodified	_VDDKKLERV_					0	0	0			REV__ENSG00000163092|ENST00000409195|XIRP2	REV__ENSG00000163092|ENST00000409195|XIRP2	MULTI-MSMS	OvCa99_classI_Rep5	1	551.3182373046875	2	551.316763	1100.61897	-0.56257	-0.00031016	-0.39729	-0.00021904	-0.95987	-0.00052919	551.3165723110063	53.108	2.3201	53.108	52.873	55.193	0					149	54	5	0	0	0	0.1698	1	4235	4235		81.525	8.6458	1	48498000	+		58857	20806	48561	48607	64539	64539					0.07268799534745085
VDDKLLLSH	9	Unmodified	_VDDKLLLSH_					0	0	0			REV__tr|A0A553SQ71|A0A553SQ71_NIACIRestrictionendonucleaseOS=NialliacirculansOX=1397GN=CEQ21_21225PE=4SV=1	REV__tr|A0A553SQ71|A0A553SQ71_NIACIRestrictionendonucleaseOS=NialliacirculansOX=1397GN=CEQ21_21225PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.7562866210938	2	520.292756	1038.57096	1.2779	0.00066486	0.99503	0.00051771	2.2729	0.0011826	520.2931662376745	83.732	1.0095	83.732	83.463	84.472	0					65	23	4	0	0	0	0.027462	1	8696	8696		20.947	1.8434	1	4591500	+		58858	30610	48562	48608	64540	64540					0.053217256147036096
VDDKTPAHRI	10	Unmodified	_VDDKTPAHRI_					0	0	0			REV__tr|A0A553SK53|A0A553SK53_NIACIProbableGTP-bindingproteinEngBOS=NialliacirculansOX=1397GN=engBPE=3SV=1	REV__tr|A0A553SK53|A0A553SK53_NIACIProbableGTP-bindingproteinEngBOS=NialliacirculansOX=1397GN=engBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.7943115234375	2	576.312012	1150.60947	1.4778	0.00085169	-0.59558	-0.00034324	0.88225	0.00050845	576.3120304483232	127.84	0.2789	127.84	127.72	128	0					6	5	2	0	0	0	0.026734	1	14818	14818		47.657	8.4045	1	67922	+		58859	30078	48563	48609	64541	64541					0.04019031249231375
VDDNQYLF	8	Unmodified	_VDDNQYLF_					0	0	0			REV__ENSG00000188596|ENST00000524981|CFAP54	REV__ENSG00000188596|ENST00000524981|CFAP54	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.31365966796875	2	507.232364	1012.45018	-0.028271	-1.434E-05	-0.79758	-0.00040456	-0.82585	-0.0004189	507.2320397272925	106.14	0.52183	104.79	104.56	105.08	-1.3482					14	9	2	0	0	0	0.028476	1	7501	7501		19.36	0	1	14899	+		58860	22722	48564	48610	64542	64542					-0.055551020987536504
VDDPQWKN	8	Unmodified	_VDDPQWKN_					0	0	0			REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1	REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.7754821777344	2	501.237981	1000.46141	0.39456	0.00019777	3.4225	0.0017155	3.8171	0.0019133	501.23960119342587	72.565	0.15981	72.565	72.45	72.61	0					5	3	2	0	0	0	0.028476	1	7061	7061		26.796	0	1	109560	+		58861	17129	48565	48611	64543	64543					-0.03880280004625547
VDDPQWKN	8	Unmodified	_VDDPQWKN_					0	0	0			REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1	REV__nc|ENSG00000085185|Q5H9F3-4|BCORL1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	501.237981	1000.46141	-0.99672	-0.0004996	-2.864	-0.0014356	-3.8607	-0.0019352	501.2364304346114	74.321	0.36716	72.35	72.167	72.534	-1.9711	-0.10762	-0.004127	NaN	19.36	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11620	+		58862	17129	48565	48611							-0.03880280004625547
VDDQSPPA	8	Unmodified	_VDDQSPPA_					0	0	0		nc|ENSG00000143502|Q5VX71-2|SUSD4;ENSG00000143502|ENST00000366878|SUSD4	nc|ENSG00000143502|Q5VX71-2|SUSD4	nc|ENSG00000143502|Q5VX71-2|SUSD4	MULTI-MSMS	OvCa99_classI_Rep5	1	414.6912536621094	2	414.690333	827.366112	0.068801	2.8531E-05	-0.082108	-3.405E-05	-0.013308	-5.5186E-06	414.6902149638678	51.985	0.76179	51.985	51.585	52.347	0					38	17	3	0	0	0	0.71369	1	4058	4058		40.573	7.057	1	816740			58863	5063	48566	48612	64544	64544					-0.05447633195660728
VDDWKMRGY	9	Unmodified	_VDDWKMRGY_					0	0	0			REV__tr|A0A7D6VSV2|A0A7D6VSV2_9CLOTDNA(cytosine-5-)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06595PE=3SV=1	REV__tr|A0A7D6VSV2|A0A7D6VSV2_9CLOTDNA(cytosine-5-)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06595PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	585.3499755859375	2	585.274041	1168.53353	-0.18493	-0.00010824	3.5459	0.0020753	3.361	0.0019671	585.7756754830873	72.909	0.57249	70.509	70.167	70.74	-2.3999					13	10	2	0	0	0	0.027462	1	5926	5926		37.159	19.794	1	18658	+		58864	31542	48567	48613	64545	64545					-0.04399688922535461
VDDWKSLV	8	Unmodified	_VDDWKSLV_					0	0	0			REV__ENST00000447767.1_1_20:57099850-57100060:+|nuORF	REV__ENST00000447767.1_1_20:57099850-57100060:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	481.2508239746094	2	481.2531	960.491647	-0.34781	-0.00016738	-1.3668	-0.00065779	-1.7146	-0.00082518	481.2510943102669	48.123	0.73145	48.123	47.724	48.455	0					48	16	5	0	0	0	0.60331	1	3518	3518		63.306	2.3343	1	1312600	+		58865	25921	48568	48614	64546	64546					0.009820786605587273
VDEHVYPD	8	Unmodified	_VDEHVYPD_					0	0	0		ENST00000482108.1_2_7:94293788-94294991:+|nuORF;nc|ENSG00000242265|Q86TG7|PEG10;ENSG00000242265|ENST00000612748|PEG10;nc|ENSG00000242265|Q86TG7-4|PEG10	ENST00000482108.1_2_7:94293788-94294991:+|nuORF	ENST00000482108.1_2_7:94293788-94294991:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	487.282470703125	2	487.216714	972.418876	-1.0109	-0.00049253	1.5075	0.00073449	0.4966	0.00024195	487.2191048008287	97.554	0.54517	95.794	95.465	96.011	-1.7595					16	10	2	0	0	0	0.028476	1	6460	6460		35.201	6.0512	1	16604			58866	9363	48569	48615	64547	64547					-0.06843675132859062
VDEIKNLLI	9	Unmodified	_VDEIKNLLI_					0	0	0			REV__ENST00000415778.1_1_6:93801823-93802168:-|nuORF	REV__ENST00000415778.1_1_6:93801823-93802168:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.8182373046875	2	528.818607	1055.62266	0.74463	0.00039377	-0.83544	-0.0004418	-0.090816	-4.8025E-05	528.8181216301339	138.8	0.89726	137.27	137.01	137.91	-1.5284					29	17	2	0	0	0	0.55588	1	13526	13526		37.159	1.5408	1	48587	+		58867	25536	48570	48616	64548	64548					0.09707469308614236
VDEINLNIN	9	Unmodified	_VDEINLNIN_					0	0	0			REV__tr|A0A7D7AAS9|A0A7D7AAS9_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12615PE=4SV=1	REV__tr|A0A7D7AAS9|A0A7D7AAS9_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12615PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.33642578125	2	522.272021	1042.52949	0.88868	0.00046413	-1.1728	-0.0006125	-0.28408	-0.00014837	522.2715195843938	109.28	0.84019	109.28	108.93	109.77	0					36	18	3	0	0	0	0.027418	1	12367	12367		52.937	3.4952	1	375580	+		58868	32670	48571	48617	64549	64549					0.009925448553985916
VDEKIQSYLT	10	Unmodified	_VDEKIQSYLT_					0	0	0			REV__nc|ENSG00000151914|Q03001|DST	REV__nc|ENSG00000151914|Q03001|DST	MULTI-SECPEP	OvCa99_classI_Rep5	1	599.2918090820312	2	598.313886	1194.61322	1.2531	0.00074976	3.6797	0.0022016	4.9328	0.0029514	598.3168871033976	155.97	1.5258	155.97	155.12	156.65	0					77	29	4	0	0	0	0.027088	1	18243	18243		26.693	0	1	67311	+		58869	20262	48572	48618	64550	64550					0.02369656232417583
VDEKMAYVDM	10	Unmodified	_VDEKMAYVDM_					0	0	0		ENSG00000168917|ENST00000446465|SLC35G2	ENSG00000168917|ENST00000446465|SLC35G2	ENSG00000168917|ENST00000446465|SLC35G2	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.2294921875	3	400.847359	1199.52025	0.78889	0.00031623	4.4709	0.0017921	5.2598	0.0021084	400.84951117493995	40.083	0.13546	40.083	39.971	40.106	0					4	2	2	0	0	0	0.027062	1	2406	2406		32.751	6.6872	1	15337			58870	6955	48573	48619	64551	64551					-0.07153307816815868
VDELIKIE	8	Unmodified	_VDELIKIE_					0	0	0		tr|A0A553SGA7|A0A553SGA7_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10500PE=4SV=1	tr|A0A553SGA7|A0A553SGA7_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10500PE=4SV=1	tr|A0A553SGA7|A0A553SGA7_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10500PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.7760009765625	2	479.776408	957.538263	0.70363	0.00033759	-0.98794	-0.00047399	-0.28431	-0.0001364	479.77571836296624	114.45	1.1917	113.05	112.73	113.92	-1.3977					49	22	3	0	0	0	0.36013	2	10626	10626;10638		95.815	0	1	169510			58871	33135	48574	48620	64552;64553	64552					0.057795184918518316
VDELIKIE	8	Unmodified	_VDELIKIE_					0	0	0		tr|A0A553SGA7|A0A553SGA7_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10500PE=4SV=1	tr|A0A553SGA7|A0A553SGA7_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10500PE=4SV=1	tr|A0A553SGA7|A0A553SGA7_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10500PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	479.776408	957.538263	0.24116	0.0001157	-0.48562	-0.00023299	-0.24446	-0.00011729	479.77604164238966	113.41	1.4323	113.29	113.07	114.5	-0.1215	0.18828	0.0002922	NaN	95.815	56	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115680			58872	33135	48574	48620							0.057795184918518316
VDELIKIE	8	Unmodified	_VDELIKIE_					0	0	0		tr|A0A553SGA7|A0A553SGA7_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10500PE=4SV=1	tr|A0A553SGA7|A0A553SGA7_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10500PE=4SV=1	tr|A0A553SGA7|A0A553SGA7_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10500PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	479.776408	957.538263	0.69933	0.00033552	-0.98173	-0.00047101	-0.28239	-0.00013549	479.7758271710013	114.03	1.3146	112.97	112.63	113.95	-1.055	-0.13292	-0.00018383	NaN	95.815	49	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	175920			58873	33135	48574	48620							0.057795184918518316
VDELLLNSD	9	Unmodified	_VDELLLNSD_					0	0	0			REV__PDPR|p.H811Mfs*23|1|0.02|ENSG00000090857|chr16:70156669-70156670|-/ATGGATTT|frameshift_variant	REV__PDPR|p.H811Mfs*23|1|0.02|ENSG00000090857|chr16:70156669-70156670|-/ATGGATTT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	509.2590026855469	2	509.258579	1016.50261	-0.85681	-0.00043634	2.3242	0.0011836	1.4674	0.00074728	509.25962304760935	34.185	0.61747	34.185	33.969	34.586	0					25	12	3	0	0	0	0.38529	1	1633	1633		53.351	3.9099	1	331940	+		58874	17234	48575	48621	64554	64554					-0.0049856375580930035
VDELMKKI	8	Oxidation (M)	_VDELM(Oxidation (M))KKI_		VDELM(1)KKI		VDELM(61)KKI	0	0	1		nc|ENSG00000107290|Q7Z333-3|SETX;ENSG00000107290|ENST00000224140|SETX;nc|ENSG00000107290|Q7Z333-4|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	nc|ENSG00000107290|Q7Z333-3|SETX	MULTI-MSMS	OvCa99_classI_Rep5	1	496.276123046875	2	496.27826	990.541968	-0.0024928	-1.2371E-06	2.8751	0.0014269	2.8726	0.0014256	496.2792152587779	101.88	0.38911	101.88	101.61	102	0					17	8	3	0	0	0	0.61436	1	11347	11347		60.972	7.6205	1	260560			58875	2599	48576	48622	64555	64555		85			0.04631864994064472
VDFFLFLN	8	Unmodified	_VDFFLFLN_					0	0	0		ENST00000566220.1_1_22:31367482-31368995:+|nuORF	ENST00000566220.1_1_22:31367482-31368995:+|nuORF	ENST00000566220.1_1_22:31367482-31368995:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.2939147949219	2	507.768386	1013.52222	2.4384	0.0012381	-1.1838	-0.00060109	1.2546	0.00063705	507.76746789654266	98.8	0.8151	98.8	98.461	99.276	0					26	19	2	0	0	0	0.028476	1	10898	10898		26.796	4.8362	1	314940			58876	13842	48577	48623	64556	64556					0.015998570456190464
VDFFPINIP	9	Unmodified	_VDFFPINIP_					0	0	0			REV__ENSG00000112659|ENST00000252050|CUL9;REV__ENSG00000044090|ENST00000265348|CUL7	REV__ENSG00000112659|ENST00000252050|CUL9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.8004150390625	2	531.286943	1060.55933	-2.1335	-0.0011335	-3.3939	-0.0018031	-5.5274	-0.0029366	531.2853243405909	118.65	0.57973	117.3	117.05	117.63	-1.3444					15	10	2	0	0	0	0.027441	1	11097	11097		49.442	17.487	1	19869	+		58877	18111;16646	48578	48624	64557	64557					0.031475285913757034
VDFFVPLGA	9	Unmodified	_VDFFVPLGA_					0	0	0		ENSG00000203734|ENST00000541398|ECT2L	ENSG00000203734|ENST00000541398|ECT2L	ENSG00000203734|ENST00000541398|ECT2L	MULTI-SECPEP	OvCa9_classI_Rep3	3	483.2541198730469	2	482.760561	963.506569	1.7417	0.00084081	-3.7552	-0.0018129	-2.0135	-0.00097206	482.7585822783143	60.896	0.22517	57.827	57.732	57.957	-3.0685					6	5	2	0	0	0	0.027462	1	2084	2084		13.775	4.3048	1	4656			58878	8929	48579	48625	64558	64558					0.023355705285666772
VDFHAMLL	8	Unmodified	_VDFHAMLL_					0	0	0			REV__ENSG00000162877|ENST00000367136|PM20D1	REV__ENSG00000162877|ENST00000367136|PM20D1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.7718811035156	2	473.246763	944.478974	0.26192	0.00012395	-1.6008	-0.00075757	-1.3389	-0.00063361	473.244634245615	106	0.61179	103.99	103.74	104.36	-2.0161					26	11	3	0	0	0	0.028476	1	9676	9676		20.482	0	1	56490	+		58879	20786	48580	48626	64559	64559					0.0045134399667858816
VDFHIVMNP	9	Unmodified	_VDFHIVMNP_					0	0	0			REV__tr|A0A7D6ZIW7|A0A7D6ZIW7_9CLOTLonproteaseOS=ClostridiumintestinaleOX=36845GN=lonPE=2SV=1	REV__tr|A0A7D6ZIW7|A0A7D6ZIW7_9CLOTLonproteaseOS=ClostridiumintestinaleOX=36845GN=lonPE=2SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.8085327148438	2	536.268227	1070.5219	0.23684	0.00012701	0.70017	0.00037548	0.93701	0.00050249	536.2686087320761	65.511	0.75354	62.815	62.417	63.17	-2.6958					19	14	2	0	0	0	0.027462	1	5079	5079		45.952	21.433	1	16518	+		58880	32072	48581	48627	64560	64560					-0.010538859458847583
VDFHIVMNP	9	Unmodified	_VDFHIVMNP_					0	0	0			REV__tr|A0A7D6ZIW7|A0A7D6ZIW7_9CLOTLonproteaseOS=ClostridiumintestinaleOX=36845GN=lonPE=2SV=1	REV__tr|A0A7D6ZIW7|A0A7D6ZIW7_9CLOTLonproteaseOS=ClostridiumintestinaleOX=36845GN=lonPE=2SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	536.268227	1070.5219	-1.8867	-0.0010118	1.8502	0.0009922	-0.036512	-1.958E-05	536.2689949484501	65.967	0.63084	62.481	62.227	62.858	-3.4854	-0.1668	0.0004787	NaN	45.952	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64576	+		58881	32072	48581	48627							-0.010538859458847583
VDFKFDDIL	9	Unmodified	_VDFKFDDIL_					0	0	0			REV__ENST00000555422.5_1_14:76165571-76198516:+|nuORF	REV__ENST00000555422.5_1_14:76165571-76198516:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	555.8095703125	2	556.28714	1110.55973	-0.13273	-7.3837E-05	-2.7581	-0.0015343	-2.8908	-0.0016081	556.7860439880079	99.586	0.24887	98.756	98.567	98.816	-0.83051					6	4	2	0	0	0	0.027462	1	9066	9066		45.972	5.3996	1	4745.6	+		58882	18460	48582	48628	64561	64561					0.008869035205634646
VDFLFSSKA	9	Unmodified	_VDFLFSSKA_					0	0	0			REV__ENSG00000164751|ENST00000357039|PEX2	REV__ENSG00000164751|ENST00000357039|PEX2	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.3148193359375	2	507.26875	1012.52295	-0.013341	-6.7676E-06	1.3943	0.00070727	1.3809	0.00070051	507.2686328767704	105.2	0.52962	105.2	104.91	105.44	0					30	11	4	0	0	0	0.027455	1	11801	11801		26.693	0	1	379830	+		58883	21018	48583	48629	64562	64562					0.017186516946594566
VDFMSKEV	8	Unmodified	_VDFMSKEV_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.7366638183594	2	477.733686	953.452819	-0.80703	-0.00038554	4.4806	0.0021406	3.6736	0.001755	477.7357549598144	44.477	2.0109	41.438	41.106	43.117	-3.0385					107	38	4	0	0	0	0.35821	2	2248	2236;2248		96.19	2.995	1	902910	+		58884	22537	48584	48630	64563;64564	64564					-0.025769699654460965
VDFMSKEV	8	Unmodified	_VDFMSKEV_					0	0	0			REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	REV__nc|ENSG00000185842|Q0VDD8-4|DNAH14	MULTI-MATCH	OvCa9_classI_Rep2	2		2	477.733686	953.452819	0.0057171	2.7312E-06	3.7208	0.0017775	3.7265	0.0017803	477.7353326189103	44.391	1.4446	41.681	41.452	42.897	-2.7097	0.12155	-0.00037503	NaN	96.19	57	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135110	+		58885	22537	48584	48630							-0.025769699654460965
VDFQLLLD	8	Unmodified	_VDFQLLLD_					0	0	0			REV__nc|ENSG00000185238|O60678-2|PRMT3	REV__nc|ENSG00000185238|O60678-2|PRMT3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.7682800292969	2	481.7633	961.512048	-0.27174	-0.00013092	-3.9451	-0.0019006	-4.2168	-0.0020315	481.76121924431516	56.24	0.90941	52.945	52.516	53.425	-3.2944					25	17	2	0	0	0	0.028476	1	3640	3640		29.15	0	1	122810	+		58886	22488	48585	48631	64565	64565					0.029752493203773156
VDFSDFIVD	9	Unmodified	_VDFSDFIVD_					0	0	0		tr|A0A553SQU8|A0A553SQU8_NIACIConjugaltransferproteinOS=NialliacirculansOX=1397GN=CEQ21_07300PE=3SV=1	tr|A0A553SQU8|A0A553SQU8_NIACIConjugaltransferproteinOS=NialliacirculansOX=1397GN=CEQ21_07300PE=3SV=1	tr|A0A553SQU8|A0A553SQU8_NIACIConjugaltransferproteinOS=NialliacirculansOX=1397GN=CEQ21_07300PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.3414916992188	2	528.747847	1055.48114	-1.0317	-0.00054548	1.7116	0.000905	0.67994	0.00035952	528.7487510843563	137.02	1.5262	136.79	136.4	137.93	-0.22697					59	31	2	0	0	0	0.027462	1	13739	13739		35.618	0	1	32914			58887	34200	48586	48632	64566	64566					-0.044379487844935284
VDFVIPKEL	9	Unmodified	_VDFVIPKEL_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;CSDE1|p.Y690*|1|0.04|ENSG00000009307|chr1:114719725-114719725|A/-|frameshift_variant;CSDE1|p.H375Tfs*17|1|0.05|ENSG00000009307|chr1:114730576-114730576|G/-|frameshift_variant	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	OvCa9_classI_Rep2	2	530.3078002929688	2	530.307875	1058.6012	-1.9566	-0.0010376	1.7389	0.00092217	-0.21762	-0.0001154	530.308639141227	117.63	1.2915	117.5	117.26	118.55	-0.12869					60	25	4	0	0	0	0.066171	4	11277	11265;11271;11277;11285		109.44	32.121	1	331320			58888	927	48587	48633	64567;64568;64569;64570	64569					0.07424084279909948
VDFVIPKEL	9	Unmodified	_VDFVIPKEL_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;CSDE1|p.Y690*|1|0.04|ENSG00000009307|chr1:114719725-114719725|A/-|frameshift_variant;CSDE1|p.H375Tfs*17|1|0.05|ENSG00000009307|chr1:114730576-114730576|G/-|frameshift_variant	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	OvCa9_classI_Rep3	3	530.3076782226562	2	530.307875	1058.6012	-0.14461	-7.6688E-05	-0.31297	-0.00016597	-0.45758	-0.00024266	530.3076035340549	118.34	1.4886	117.31	117.03	118.52	-1.0324					73	29	4	0	0	0	0.051592	3	8921	8921;8927;8941		117.81	24.668	1	450800			58889	927	48587	48633	64571;64572;64573	64571					0.07424084279909948
VDFVIPKEL	9	Unmodified	_VDFVIPKEL_					0	0	0		nc|ENSG00000009307|O75534-2|CSDE1;ENSG00000009307|ENST00000358528|CSDE1;nc|ENSG00000009307|O75534-3|CSDE1;nc|ENSG00000009307|O75534-4|CSDE1;CSDE1|p.Y690*|1|0.04|ENSG00000009307|chr1:114719725-114719725|A/-|frameshift_variant;CSDE1|p.H375Tfs*17|1|0.05|ENSG00000009307|chr1:114730576-114730576|G/-|frameshift_variant	nc|ENSG00000009307|O75534-2|CSDE1	nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.3072509765625	2	530.307875	1058.6012	-2.078	-0.001102	1.8794	0.00099666	-0.19863	-0.00010534	530.3087641100136	118.53	1.6171	117.18	116.89	118.51	-1.3444					78	30	4	0	0	0	0.14445	3	11103	11103;11115;11127		85.862	27.08	1	478330			58890	927	48587	48633	64574;64575;64576	64574					0.07424084279909948
VDFYSAAR	8	Unmodified	_VDFYSAAR_					0	0	0		nc|ENSG00000169862|Q9UQB3-2|CTNND2;ENSG00000169862|ENST00000304623|CTNND2	nc|ENSG00000169862|Q9UQB3-2|CTNND2	nc|ENSG00000169862|Q9UQB3-2|CTNND2	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.27020263671875	2	464.729792	927.445031	1.5527	0.00072161	0.44413	0.0002064	1.9969	0.00092801	464.7298808213227	107.04	0.3833	107.04	106.89	107.27	0					14	8	2	0	0	0	0.028476	1	12060	12060		21.96	0	1	265390			58891	7045	48588	48634	64577	64577					-0.02159361170720331
VDGASLQDIPL	11	Unmodified	_VDGASLQDIPL_					0	0	0			REV__tr|A0A7D7A1Q7|A0A7D7A1Q7_9CLOTElongationfactor4OS=ClostridiumintestinaleOX=36845GN=lepAPE=3SV=1	REV__tr|A0A7D7A1Q7|A0A7D7A1Q7_9CLOTElongationfactor4OS=ClostridiumintestinaleOX=36845GN=lepAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	564.302001953125	2	564.300778	1126.587	2.1679	0.0012233	0.056586	3.1931E-05	2.2245	0.0012553	564.3005422942158	126.38	0.78378	126.38	126.09	126.87	0					38	16	3	0	0	0	0.5804	1	14613	14613		46.457	0	1	390500	+		58892	32507	48589	48635	64578	64578					0.028773870609711594
VDGENELASPK	11	Unmodified	_VDGENELASPK_					0	0	0		nc|ENSG00000127831|P09327-2|VIL1;ENSG00000127831|ENST00000248444|VIL1	nc|ENSG00000127831|P09327-2|VIL1	nc|ENSG00000127831|P09327-2|VIL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.737060546875	2	579.785492	1157.55643	0.39501	0.00022902	-3.237	-0.0018768	-2.842	-0.0016477	579.7834731802085	158.92	1.4062	158.92	158.65	160.06	0					53	28	4	0	0	0	0.025344	1	18628	18628		41.427	9.7923	1	366530			58893	3847	48590	48636	64579	64579					-0.01604391324099197
VDGFRFDL	8	Unmodified	_VDGFRFDL_					0	0	0		tr|A0A553SJR8|A0A553SJR8_NIACIpullulanaseOS=NialliacirculansOX=1397GN=pulAPE=4SV=1	tr|A0A553SJR8|A0A553SJR8_NIACIpullulanaseOS=NialliacirculansOX=1397GN=pulAPE=4SV=1	tr|A0A553SJR8|A0A553SJR8_NIACIpullulanaseOS=NialliacirculansOX=1397GN=pulAPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.28155517578125	2	484.745442	967.476331	0.78628	0.00038115	2.0534	0.00099536	2.8397	0.0013765	484.74633046578106	86.771	0.93875	84.144	83.86	84.799	-2.6269					31	18	2	0	0	0	0.028476	1	7347	7347		30.504	0	1	202120			58894	33537	48591	48637	64580	64580					-0.008707881366149195
VDGFRFDL	8	Unmodified	_VDGFRFDL_					0	0	0		tr|A0A553SJR8|A0A553SJR8_NIACIpullulanaseOS=NialliacirculansOX=1397GN=pulAPE=4SV=1	tr|A0A553SJR8|A0A553SJR8_NIACIpullulanaseOS=NialliacirculansOX=1397GN=pulAPE=4SV=1	tr|A0A553SJR8|A0A553SJR8_NIACIpullulanaseOS=NialliacirculansOX=1397GN=pulAPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	484.745442	967.476331	-0.82464	-0.00039974	4.4336	0.0021492	3.6089	0.0017494	484.7474084581247	85.91	0.81326	84.419	84.196	85.009	-1.4906	0.19522	-6.1982E-05	NaN	30.504	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51160			58895	33537	48591	48637							-0.008707881366149195
VDGFRFDL	8	Unmodified	_VDGFRFDL_					0	0	0		tr|A0A553SJR8|A0A553SJR8_NIACIpullulanaseOS=NialliacirculansOX=1397GN=pulAPE=4SV=1	tr|A0A553SJR8|A0A553SJR8_NIACIpullulanaseOS=NialliacirculansOX=1397GN=pulAPE=4SV=1	tr|A0A553SJR8|A0A553SJR8_NIACIpullulanaseOS=NialliacirculansOX=1397GN=pulAPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	484.745442	967.476331	-1.424	-0.0006903	4.963	0.0024058	3.539	0.0017155	484.74773983981027	86.328	1.3613	84.108	83.785	85.146	-2.2204	-0.11552	0.0004513	NaN	30.504	52	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	234980			58896	33537	48591	48637							-0.008707881366149195
VDGGREMESAR	11	Unmodified	_VDGGREMESAR_					0	0	0		ENST00000374017.3_1_6:34725332-34725551:+|nuORF	ENST00000374017.3_1_6:34725332-34725551:+|nuORF	ENST00000374017.3_1_6:34725332-34725551:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	603.7778930664062	2	603.780219	1205.54588	0.53688	0.00032416	-3.7529	-0.0022659	-3.216	-0.0019417	603.7777222283132	102.22	1.6689	100.02	99.371	101.04	-2.1994					67	31	3	0	0	0	0.39237	1	9209	9209		61.691	1.7605	1	130430			58897	11022	48592	48638	64581	64581					-0.048666972501678174
VDGGREMESAR	11	Unmodified	_VDGGREMESAR_					0	0	0		ENST00000374017.3_1_6:34725332-34725551:+|nuORF	ENST00000374017.3_1_6:34725332-34725551:+|nuORF	ENST00000374017.3_1_6:34725332-34725551:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	603.780219	1205.54588	-1.5142	-0.00091425	-1.9072	-0.0011515	-3.4214	-0.0020658	603.7788564334205	100.75	1.7853	99.98	99.466	101.25	-0.77408	-0.013277	0.0014389	NaN	61.691	79	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66176			58898	11022	48592	48638							-0.048666972501678174
VDGGREMESAR	11	Unmodified	_VDGGREMESAR_					0	0	0		ENST00000374017.3_1_6:34725332-34725551:+|nuORF	ENST00000374017.3_1_6:34725332-34725551:+|nuORF	ENST00000374017.3_1_6:34725332-34725551:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	603.780219	1205.54588	0.96	0.00057963	-3.9919	-0.0024102	-3.0319	-0.0018306	603.7775262914416	101.59	2.0899	99.984	99.344	101.43	-1.6053	-0.0096823	-0.0010785	NaN	61.691	83	39	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134390			58899	11022	48592	48638							-0.048666972501678174
VDGHISRNRA	10	Unmodified	_VDGHISRNRA_					0	0	0			REV__ENST00000524795.5_1_15:66587446-66615029:+|nuORF	REV__ENST00000524795.5_1_15:66587446-66615029:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.8214111328125	2	562.799603	1123.58465	1.9995	0.0011253	1.761	0.00099108	3.7605	0.0021164	562.8012320780985	109.16	0.39359	109.16	108.89	109.28	0					13	8	2	0	0	0	0.026782	1	12341	12341		23.523	0	1	135720	+		58900	21239	48593	48639	64582	64582					0.027803961665085808
VDGPGIRVVV	10	Unmodified	_VDGPGIRVVV_					0	0	0		tr|A0A7D6VS02|A0A7D6VS02_9CLOTPyruvateformate-lyase-activatingenzymeOS=ClostridiumintestinaleOX=36845GN=pflAPE=3SV=1	tr|A0A7D6VS02|A0A7D6VS02_9CLOTPyruvateformate-lyase-activatingenzymeOS=ClostridiumintestinaleOX=36845GN=pflAPE=3SV=1	tr|A0A7D6VS02|A0A7D6VS02_9CLOTPyruvateformate-lyase-activatingenzymeOS=ClostridiumintestinaleOX=36845GN=pflAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.8056335449219	2	505.803291	1009.59203	-0.50118	-0.0002535	0.082917	4.194E-05	-0.41826	-0.00021156	505.8032776556792	102.71	1.307	100.51	100.15	101.46	-2.1994					40	24	2	0	0	0	0.49558	1	9269	9269		54.776	0.053964	1	217980			58901	34971	48594	48640	64583	64583					0.0876173571423351
VDGQGAESC	9	Unmodified	_VDGQGAESC_					0	0	0			REV__FLNC|p.I2110Tfs*16|1|0.33|ENSG00000128591|chr7:128853588-128853591|ATCA/-|frameshift_variant	REV__FLNC|p.I2110Tfs*16|1|0.33|ENSG00000128591|chr7:128853588-128853591|ATCA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	433.17156982421875	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.5811	1	1552	1552		34.173	3.6689	1	60065	+		58902	18860	48595	48641	64584	64584					-0.10924467452775843
VDGTVLSSLL	10	Unmodified	_VDGTVLSSLL_					0	0	0		ENST00000341550.8_1_12:6760208-6760307:-|nuORF	ENST00000341550.8_1_12:6760208-6760307:-|nuORF	ENST00000341550.8_1_12:6760208-6760307:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	502.28814697265625	2	502.28714	1002.55973	-1.4406	-0.00072361	1.0515	0.00052816	-0.38912	-0.00019545	502.2875527369838	84.598	1.8708	82.337	81.974	83.845	-2.261					101	37	4	0	0	0	0.18827	1	4934	4934		96.19	5.5896	1	654570			58903	10568	48596	48642	64585	64585					0.058549035205942346
VDGVLKPK	8	Unmodified	_VDGVLKPK_					0	0	0			REV__nc|ENSG00000065911|P13995-2|MTHFD2	REV__nc|ENSG00000065911|P13995-2|MTHFD2	MULTI-MSMS	OvCa9_classI_Rep2	2	428.2688293457031	2	428.268553	854.522553	-1.0602	-0.00045404	1.3366	0.00057244	0.27646	0.0001184	428.2689736144851	56.503	1.4866	53.699	53.275	54.761	-2.804					91	29	4	0	0	0	0.68714	1	4032	4032		45.952	5.3793	1	554390	+		58904	16804	48597	48643	64586	64586					0.0894727676546836
VDGVSTVAR	9	Unmodified	_VDGVSTVAR_					0	0	0		ENSG00000136824|ENST00000374793|SMC2	ENSG00000136824|ENST00000374793|SMC2	ENSG00000136824|ENST00000374793|SMC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	451.746826171875	2	452.248349	902.482145	2.5211	0.0011401	-1.0522	-0.00047584	1.4689	0.0006643	452.24781409656885	84.937	0.24618	84.937	84.758	85.004	0					9	5	2	0	0	0	0.027433	1	8898	8898		19.997	0	1	849840			58905	4519	48598	48644	64587	64587					0.0270031037505305
VDHQAVLVK	9	Unmodified	_VDHQAVLVK_					0	0	0			REV__nc|ENSG00000140374|P13804-2|ETFA	REV__nc|ENSG00000140374|P13804-2|ETFA	MULTI-MSMS	OvCa99_classI_Rep5	1	504.7965393066406	2	504.795466	1007.57638	-0.084318	-4.2563E-05	0.032569	1.6441E-05	-0.051749	-2.6123E-05	504.79535144095587	56.71	0.50655	56.71	56.498	57.004	0					25	11	3	0	0	0	0.3076	1	4730	4730		62.107	14.192	1	978090	+		58906	19664	48599	48645	64588	64588					0.0728944919718515
VDHVFPLL	8	Unmodified	_VDHVFPLL_					0	0	0		nc|ENSG00000134324|Q14693|LPIN1;nc|ENSG00000134324|Q14693-2|LPIN1;nc|ENSG00000134324|Q14693-4|LPIN1;ENSG00000134324|ENST00000674199|LPIN1;nc|ENSG00000134324|Q14693-5|LPIN1;nc|ENSG00000134324|Q14693-7|LPIN1;ENST00000487576.1_1_2:11963299-11964914:+|nuORF;ENST00000475922.1_1_2:11959598-11964914:+|nuORF	nc|ENSG00000134324|Q14693|LPIN1	nc|ENSG00000134324|Q14693|LPIN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.28021240234375	2	470.268553	938.522553	0.44052	0.00020716	-0.030489	-1.4338E-05	0.41003	0.00019282	470.2684399297101	102.5	2.1327	100.3	99.323	101.46	-2.1994					73	40	3	0	0	0	0.028476	1	9197	9197		54.765	0	1	109050			58907	4284	48600	48646	64589	64589					0.050832767654810596
VDIAVGVVR	9	Unmodified	_VDIAVGVVR_					0	0	0			REV__nc|ENSG00000142609|Q9C0B2|CFAP74	REV__nc|ENSG00000142609|Q9C0B2|CFAP74	MULTI-MSMS	OvCa9_classI_Rep2	2	464.28460693359375	2	464.284734	926.554916	-0.47758	-0.00022173	-0.04427	-2.0554E-05	-0.52185	-0.00024229	464.2847749072464	94.677	2.282	93.578	92.958	95.24	-1.0995					133	45	5	0	0	0	0.31747	1	8542	8542		60.972	5.4677	1	4671500	+		58908	19794	48601	48647	64590	64590					0.0887006416847953
VDIKEGIEF	9	Unmodified	_VDIKEGIEF_					0	0	0		tr|A0A7D7A5G0|A0A7D7A5G0_9CLOTHomoserinekinaseOS=ClostridiumintestinaleOX=36845GN=thrBPE=3SV=1	tr|A0A7D7A5G0|A0A7D7A5G0_9CLOTHomoserinekinaseOS=ClostridiumintestinaleOX=36845GN=thrBPE=3SV=1	tr|A0A7D7A5G0|A0A7D7A5G0_9CLOTHomoserinekinaseOS=ClostridiumintestinaleOX=36845GN=thrBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2985229492188	2	525.279315	1048.54408	1.3662	0.00071763	2.2742	0.0011946	3.6404	0.0019122	525.2810240319344	92.462	0.46043	92.462	92.26	92.721	0					18	10	3	0	0	0	0.027433	1	10013	10013		45.972	6.7194	1	415550			58909	36169	48602	48648	64591	64591					0.02174617003538515
VDIKLHLL	8	Unmodified	_VDIKLHLL_					0	0	0			REV__ENSG00000131018|ENST00000367255|SYNE1	REV__ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.7927551269531	2	475.805303	949.596052	0.20288	9.6529E-05	-2.9769	-0.0014164	-2.774	-0.0013199	475.80380266544756	80.504	0.14972	78.809	78.719	78.868	-1.6951					4	2	2	0	0	0	0.028476	1	6791	6791		60.294	24.676	1	9743.6	+		58910	18991	48603	48649	64592	64592					0.11923825207952632
VDIKPIQVQ	9	Unmodified	_VDIKPIQVQ_					0	0	0			REV__ENSG00000134698|ENST00000373210|AGO4	REV__ENSG00000134698|ENST00000373210|AGO4	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.322021484375	2	520.310949	1038.60735	0.59914	0.00031174	3.602	0.0018742	4.2012	0.0021859	520.3114642957802	106.32	0.78333	105.05	104.49	105.27	-1.267					25	14	3	0	0	0	0.027462	1	7510	7510		38.806	15.764	1	45884	+		58911	19222	48604	48650	64593	64593					0.08958602511415847
VDILGIVCQL	10	Unmodified	_VDILGIVCQL_					0	0	0		ENST00000492977.5_1_1:202119404-202127449:-|nuORF;ENSG00000143851|ENST00000691036|PTPN7;nc|ENSG00000143851|P35236-2|PTPN7;nc|ENSG00000143851|P35236-3|PTPN7	ENST00000492977.5_1_1:202119404-202127449:-|nuORF	ENST00000492977.5_1_1:202119404-202127449:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.8097534179688	2	536.807185	1071.59982	-0.85455	-0.00045873	3.8389	0.0020608	2.9844	0.001602	536.8091929671385	66.71	1.4792	63.22	62.805	64.284	-3.4902					90	29	6	0	0	0	0.6104	1	4855	4855		40.778	1.972	1	2051100			58912	5101	48605	48651	64594	64594					0.06688126919493698
VDIQFLYKLI	10	Unmodified	_VDIQFLYKLI_					0	0	0			REV__ENSG00000150527|ENST00000640607|MIA2	REV__ENSG00000150527|ENST00000640607|MIA2	MULTI-MSMS	OvCa99_classI_Rep5	1	417.9168701171875	3	417.91643	1250.72746	0.54834	0.00022916	0.18664	7.7999E-05	0.73498	0.00030716	417.91631392614664	32.398	1.5243	32.398	32.204	33.728	0					59	30	4	0	0	0	0.73378	1	1412	1412		25.126	0	1	267590	+		58913	20192	48606	48652	64595	64595					0.1121259078518051
VDIQFLYKLI	10	Unmodified	_VDIQFLYKLI_					0	0	0			REV__ENSG00000150527|ENST00000640607|MIA2	REV__ENSG00000150527|ENST00000640607|MIA2	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	417.91643	1250.72746	0.54834	0.00022916	0.18664	7.7999E-05	0.73498	0.00030716	417.91631392614664	32.398	1.5243	32.398	32.204	33.728	0	0	0	NaN	25.126	59	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	267590	+		58914	20192	48606	48652							0.1121259078518051
VDISAPKI	8	Unmodified	_VDISAPKI_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep3	3	421.7535095214844	2	421.752736	841.490919	-0.38303	-0.00016154	0.26345	0.00011111	-0.11958	-5.0432E-05	421.7527469423962	86.784	1.5253	84.607	84.18	85.706	-2.1768					69	29	4	0	0	0	0.26545	1	5185	5185		113.41	31.107	1	552940			58915	3687	48607	48653	64596	64596					0.06383284011531032
VDISAPKI	8	Unmodified	_VDISAPKI_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep4_	4	421.75390625	2	421.752736	841.490919	-0.75372	-0.00031788	0.41066	0.0001732	-0.34306	-0.00014469	421.7528017276431	87.151	1.5556	84.524	84.201	85.757	-2.6269					68	30	3	0	0	0	0.55617	1	7400	7400		71.877	3.3928	1	486540			58916	3687	48607	48653	64597	64597					0.06383284011531032
VDISAPKI	8	Unmodified	_VDISAPKI_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MATCH	OvCa9_classI_Rep2	2		2	421.752736	841.490919	-0.34362	-0.00014492	0.34719	0.00014643	0.0035662	1.5041E-06	421.75271267013636	86.096	1.831	84.605	83.801	85.632	-1.4906	0.026485	1.1822E-05	NaN	113.41	85	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	193740			58917	3687	48607	48653							0.06383284011531032
VDISGPKV	8	Unmodified	_VDISGPKV_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep4_	4	407.7376708984375	2	407.737086	813.459619	0.43828	0.0001787	-0.19168	-7.8156E-05	0.2466	0.00010055	407.73689363862377	69.706	1.0234	66.225	65.91	66.934	-3.4812					51	20	3	0	0	0	0.29515	1	5230	5230		108.09	8.7125	1	716350			58918	3687	48608	48654	64598	64598					0.04542710977432307
VDISGPKV	8	Unmodified	_VDISGPKV_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MATCH	OvCa9_classI_Rep2	2		2	407.737086	813.459619	0.30698	0.00012517	0.30317	0.00012362	0.61015	0.00024878	407.73705065327175	68.959	1.3903	66.338	65.425	66.815	-2.6203	0.056948	0.000202	NaN	108.09	65	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128740			58919	3687	48608	48654							0.04542710977432307
VDISLPKL	8	Unmodified	_VDISLPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep2	2	442.7762451171875	2	442.776211	883.537869	1.7658	0.00078185	-1.5731	-0.00069653	0.19268	8.5315E-05	442.77539906506104	113.91	1.5302	113.79	113.47	115	-0.11777					66	30	3	0	0	0	0.35821	3	10835	10829;10835;10855		96.19	8.2799	1	257310			58920	3687	48609	48655	64599;64600;64601	64600					0.09144143562662066
VDISLPKL	8	Unmodified	_VDISLPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep3	3	442.7759704589844	2	442.776211	883.537869	0.19053	8.4361E-05	-0.046582	-2.0626E-05	0.14395	6.3736E-05	442.77602560643373	114.63	1.6302	113.58	113.15	114.78	-1.055					71	32	4	0	0	0	0.33046	3	8478	8461;8478;8498		101.6	13.904	1	301840			58921	3687	48609	48655	64602;64603;64604	64603					0.09144143562662066
VDISLPKL	8	Unmodified	_VDISLPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep4_	4	442.7754211425781	2	442.776211	883.537869	0.33152	0.00014679	-0.19995	-8.8533E-05	0.13157	5.8254E-05	442.77600255654266	114.89	1.5649	113.49	113.15	114.71	-1.3977					72	30	4	0	0	0	0.31378	4	10672	10672;10696;10709;10722		104.75	8.5712	1	313930			58922	3687	48609	48655	64605;64606;64607;64608	64605					0.09144143562662066
VDISQDNAL	9	Unmodified	_VDISQDNAL_					0	0	0		ENSG00000142669|ENST00000270792|SH3BGRL3;WAC-SH3BGRL3|1|fusion	ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.7673034667969	2	487.743096	973.47164	0.80864	0.00039441	-0.81685	-0.00039841	-0.0082177	-4.0081E-06	487.74264063840263	89.728	1.2078	87.153	86.851	88.058	-2.575					38	23	3	0	0	0	0.027462	1	7701	7701		37.812	12.237	1	92242			58923	4989	48610	48656	64609	64609					-0.016157170700353163
VDISQDNAL	9	Unmodified	_VDISQDNAL_					0	0	0		ENSG00000142669|ENST00000270792|SH3BGRL3;WAC-SH3BGRL3|1|fusion	ENSG00000142669|ENST00000270792|SH3BGRL3	ENSG00000142669|ENST00000270792|SH3BGRL3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	487.743096	973.47164	-0.87087	-0.00042476	1.2399	0.00060475	0.36903	0.00017999	487.74355880129735	88.998	0.98689	86.867	86.607	87.594	-2.1309	-0.14273	0.00083074	NaN	42.864	44	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119760			58924	4989	48610	48656							-0.016157170700353163
VDISVPKI	8	Unmodified	_VDISVPKI_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa9_classI_Rep3	3	435.7706298828125	2	435.768386	869.522219	-0.21212	-9.2437E-05	0.26706	0.00011638	0.054934	2.3938E-05	435.7684264752771	102.12	1.778	100.6	100.06	101.83	-1.5211					85	33	4	0	0	0	0.29515	1	7010	7010		108.09	14.081	1	204430			58925	28942;32737;3687	48611	48657	64610	64610					0.08223857045629757
VDISVPKI	8	Unmodified	_VDISVPKI_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa9_classI_Rep4_	4	435.7684326171875	2	435.768386	869.522219	0.27664	0.00012055	-0.043426	-1.8924E-05	0.23321	0.00010163	435.7682707561548	102.74	1.9393	100.54	99.884	101.82	-2.1994					76	36	4	0	0	0	0.42649	1	9263	9263		84.916	2.6105	1	213360			58926	28942;32737;3687	48611	48657	64611	64611					0.08223857045629757
VDISVPKI	8	Unmodified	_VDISVPKI_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK	REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;ENSG00000124942|ENST00000378024|AHNAK	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	435.768386	869.522219	-0.77098	-0.00033597	0.9132	0.00039794	0.14221	6.1972E-05	435.7686737743369	101.52	1.2388	100.76	100.32	101.56	-0.76401	0.12547	0.00054904	NaN	108.09	57	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161940			58927	28942;32737;3687	48611	48657							0.08223857045629757
VDIVTGRLL	9	Unmodified	_VDIVTGRLL_					0	0	0			REV__ENSG00000113600|ENST00000263408|C9	REV__ENSG00000113600|ENST00000263408|C9	MULTI-MSMS	OvCa99_classI_Rep5	1	493.30572509765625	2	493.305667	984.596781	0.66511	0.0003281	1.316	0.00064921	1.9812	0.00097732	493.30625366563197	139.96	3.1759	139.96	139.56	142.73	0					177	64	5	0	0	0	0.38969	1	16314	16314		52.937	5.2794	1	2536200	+		58928	18164	48612	48658	64612	64612					0.1038661985702447
VDKALADDL	9	Unmodified	_VDKALADDL_					0	0	0		ENSG00000166788|ENST00000524803|SAAL1	ENSG00000166788|ENST00000524803|SAAL1	ENSG00000166788|ENST00000524803|SAAL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.94110107421875	2	480.25584	958.497126	-0.48618	-0.00023349	0.60541	0.00029075	0.11923	5.7263E-05	480.2560849801888	63.303	0.53176	59.828	59.48	60.012	-3.475					18	10	2	0	0	0	0.027455	1	4409	4409		34.173	11.13	1	140010			58929	6711	48613	48659	64613	64613					0.016217574523693656
VDKIEIEPP	9	Unmodified	_VDKIEIEPP_					0	0	0			REV__KIAA0146-DSCAM|1|fusion	REV__KIAA0146-DSCAM|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3135375976562	2	520.28714	1038.55973	1.0154	0.00052831	3.3518	0.0017439	4.3672	0.0022722	520.28892599047	85.115	0.93258	82.469	82.361	83.293	-2.6463					29	18	2	0	0	0	0.027448	1	7188	7188		35.618	0	1	133670	+		58930	16284	48614	48660	64614	64614					0.04198903520591557
VDKKASRWLI	10	Unmodified	_VDKKASRWLI_					0	0	0			REV__nc|ENSG00000146414|Q149N8-4|SHPRH	REV__nc|ENSG00000146414|Q149N8-4|SHPRH	MULTI-MSMS	OvCa9_classI_Rep3	3	405.9118957519531	3	405.91179	1214.71354	2.1896	0.00088878	-2.2743	-0.00092318	-0.08475	-3.4401E-05	405.91079461880264	64.995	0.70951	62.001	61.746	62.456	-2.9933					33	13	3	0	0	0	0.64812	1	2577	2577		36.318	8.6737	1	77611	+		58931	20017	48615	48661	64615	64615					0.11477358076763267
VDKKNLIIP	9	Unmodified	_VDKKNLIIP_					0	0	0			REV__tr|A0A7D6VU93|A0A7D6VU93_9CLOTDUF4317domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11660PE=4SV=1	REV__tr|A0A7D6VU93|A0A7D6VU93_9CLOTDUF4317domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11660PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.3117065429688	2	520.329142	1038.64373	-0.90551	-0.00047116	1.485	0.00077268	0.57946	0.00030151	520.8318048645264	84.802	0.58946	82.541	82.258	82.848	-2.261					17	11	2	0	0	0	0.027448	1	4967	4967		35.618	8.9254	1	41408	+		58932	31660	48616	48662	64616	64616					0.12595479408128085
VDKKRDKIERK	11	Unmodified	_VDKKRDKIERK_					0	0	0		nc|ENSG00000182901|P49802-4|RGS7;nc|ENSG00000182901|P49802-2|RGS7;nc|ENSG00000182901|P49802-3|RGS7;nc|ENSG00000182901|P49802-5|RGS7;ENSG00000182901|ENST00000440928|RGS7	nc|ENSG00000182901|P49802-4|RGS7	nc|ENSG00000182901|P49802-4|RGS7	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.28460693359375	3	472.287808	1413.8416	-5.3968	-0.0025489	-2.9674	-0.0014015	-8.3642	-0.0039503	472.28668669654706	159.46	3.529	157.88	156.69	160.22	-1.5858					186	88	4	0	0	0	0.72516	1	15708	15708		13.508	2.9211	1	120390			58933	8036	48617	48663	64617	64617					0.15122873599966624
VDKLNPLDGG	10	Unmodified	_VDKLNPLDGG_					0	0	0		tr|A0A7D6VPJ3|A0A7D6VPJ3_9CLOTMannonatedehydrataseOS=ClostridiumintestinaleOX=36845GN=uxuAPE=3SV=1	tr|A0A7D6VPJ3|A0A7D6VPJ3_9CLOTMannonatedehydrataseOS=ClostridiumintestinaleOX=36845GN=uxuAPE=3SV=1	tr|A0A7D6VPJ3|A0A7D6VPJ3_9CLOTMannonatedehydrataseOS=ClostridiumintestinaleOX=36845GN=uxuAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.3095703125	2	514.274564	1026.53457	-0.43393	-0.00022316	2.0376	0.0010479	1.6037	0.00082474	514.2746388451487	76.574	2.9606	73.635	73.27	76.231	-2.9389					94	61	2	0	0	0	0.026551	1	6273	6273		42.864	0	1	322390			58934	34774	48618	48664	64618	64618					0.022368487180074226
VDKPLQKNLL	10	Unmodified	_VDKPLQKNLL_					0	0	0			REV__tr|A0A553SSY0|A0A553SSY0_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_03825PE=3SV=1	REV__tr|A0A553SSY0|A0A553SSY0_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_03825PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3550415039062	2	584.358431	1166.70231	-1.7162	-0.0010029	-1.68	-0.00098173	-3.3962	-0.0019846	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.69073	1	14385	14385		31.53	10.583	1	833330	+		58935	30892	48619	48665	64619	64619					0.1256253598260173
VDKQYVNLI	9	Unmodified	_VDKQYVNLI_					0	0	0			REV__nc|ENSG00000236320|P0C7P3-2|SLFN14	REV__nc|ENSG00000236320|P0C7P3-2|SLFN14	MULTI-MSMS	OvCa9_classI_Rep2	2	546.3077392578125	2	546.308406	1090.60226	0.4224	0.00023076	-1.3003	-0.00071036	-0.87789	-0.0004796	546.3075818804031	132.15	1.3726	131.93	131.54	132.92	-0.22696					63	27	3	0	0	0	0.35444	1	13051	13051		56.721	1.9447	1	122140	+		58936	23410	48620	48666	64620	64620					0.06058298648804339
VDKSKPDKALS	11	Unmodified	_VDKSKPDKALS_					0	0	0		ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	ENSG00000023608|ENST00000216294|SNAPC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	593.8079833984375	2	594.335153	1186.65575	1.3093	0.00077819	-2.1814	-0.0012965	-0.87202	-0.00051827	594.3335412934722	84.559	0.80486	81.896	81.639	82.444	-2.6629					23	16	2	0	0	0	0.025701	1	7119	7119		11.636	0	1	31950			58937	1040	48621	48667	64621	64621					0.06989051360665144
VDKWNVIK	8	Unmodified	_VDKWNVIK_					0	0	0			REV__tr|A0A553SL25|A0A553SL25_NIACIsuperoxidedismutaseOS=NialliacirculansOX=1397GN=CEQ21_19845PE=3SV=1	REV__tr|A0A553SL25|A0A553SL25_NIACIsuperoxidedismutaseOS=NialliacirculansOX=1397GN=CEQ21_19845PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2897033691406	2	501.292559	1000.57057	-1.4695	-0.00073667	-2.6975	-0.0013522	-4.167	-0.0020889	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.74229	1	11240	11240		30.504	1.3541	1	97838	+		58938	30176	48622	48668	64622	64622					0.07030350685511166
VDLDADSDPN	10	Unmodified	_VDLDADSDPN_					0	0	0			REV__ENST00000480686.5_1_1:45110332-45115698:+|nuORF	REV__ENST00000480686.5_1_1:45110332-45115698:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2620239257812	2	530.725101	1059.43565	1.7872	0.00094853	1.0061	0.00053394	2.7933	0.0014825	530.7256941918142	91.375	0.48449	91.375	91.057	91.542	0					23	11	3	0	0	0	0.026956	1	9858	9858		26.693	7.5894	1	574350	+		58939	22633	48623	48669	64623	64623					-0.0916921903756247
VDLERTIAL	9	Unmodified	_VDLERTIAL_					0	0	0		ENSG00000103657|ENST00000443617|HERC1;HERC1|p.Q2480Lfs*11|1|0.07|ENSG00000103657|chr15:63674749-63674750|-/A|frameshift_variant	ENSG00000103657|ENST00000443617|HERC1	ENSG00000103657|ENST00000443617|HERC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.3013305664062	2	515.300581	1028.58661	-0.50013	-0.00025772	0.54002	0.00027827	0.039894	2.0557E-05	515.3008077340658	104.73	1.3153	102.61	102.38	103.69	-2.1192					43	25	2	0	0	0	0.44568	1	9501	9501		47.657	0	1	436850			58940	2336	48624	48670	64624	64624					0.07346012131756652
VDLFRSLDI	9	Unmodified	_VDLFRSLDI_					0	0	0		tr|A0A7D7A3G9|A0A7D7A3G9_9CLOTserine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=serSPE=4SV=1	tr|A0A7D7A3G9|A0A7D7A3G9_9CLOTserine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=serSPE=4SV=1	tr|A0A7D7A3G9|A0A7D7A3G9_9CLOTserine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=serSPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	539.3028564453125	2	539.300581	1076.58661	2.1157	0.001141	-1.4549	-0.00078462	0.66083	0.00035639	539.2996242141986	78.313	1.5061	78.313	77.968	79.474	0					106	36	5	0	0	0	0.049969	1	7973	7973		118.74	0.93201	1	39372000			58941	36116	48625	48671	64625	64625					0.05138012131783398
VDLKGPKV	8	Unmodified	_VDLKGPKV_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep2	2	428.26898193359375	2	428.268553	854.522553	-1.0602	-0.00045404	1.3366	0.00057244	0.27646	0.0001184	428.2689736144851	56.503	1.4866	53.699	53.275	54.761	-2.804					91	29	4	0	0	0	0.50747	4	4008	3976;3981;4008;4039		76.774	0	1	554390			58942	3687	48626	48672	64626;64627;64628;64629	64628					0.08947276765479728
VDLKGPKV	8	Unmodified	_VDLKGPKV_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep4_	4	428.269775390625	2	428.268553	854.522553	0.62739	0.00026869	-0.80861	-0.0003463	-0.18122	-7.7609E-05	428.26814430976907	57.133	2.0733	53.788	53.324	55.397	-3.3449					106	40	4	0	0	0	0.3457	3	3685	3685;3697;3761		98.629	0	1	1846200			58943	3687	48626	48672	64630;64631;64632	64630					0.08947276765479728
VDLLLLSISGL	11	Unmodified	_VDLLLLSISGL_					0	0	0			REV__ENSG00000205409|ENST00000329322|OR52E6	REV__ENSG00000205409|ENST00000329322|OR52E6	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.8226318359375	2	571.855189	1141.69583	0.069862	3.9951E-05	2.9518	0.001688	3.0216	0.0017279	571.8568723492928	73.736	0.19226	73.736	73.636	73.829	0					10	4	3	0	0	0	0.02605	1	7264	7264		30.318	9.3708	1	517220	+		58944	23215	48627	48673	64633	64633					0.13064598031246533
VDLLVEIL	8	Unmodified	_VDLLVEIL_					0	0	0		ENSG00000100991|ENST00000252015|TRPC4AP;nc|ENSG00000100991|Q8TEL6-3|TRPC4AP;nc|ENSG00000100991|Q8TEL6-2|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	ENSG00000100991|ENST00000252015|TRPC4AP	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.3149108886719	2	457.283869	912.553185	0.070521	3.2248E-05	-0.23156	-0.00010589	-0.16104	-7.364E-05	457.2841324146015	71.077	0.11491	71.077	70.994	71.109	0					6	2	3	0	0	0	0.028476	1	6845	6845		26.796	0	1	136660			58945	2130	48628	48674	64634	64634					0.09341010359855773
VDLMDLKYL	9	Unmodified	_VDLMDLKYL_					0	0	0		ENST00000274569.8_1_5:148748707-148748803:+|nuORF	ENST00000274569.8_1_5:148748707-148748803:+|nuORF	ENST00000274569.8_1_5:148748707-148748803:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	555.2958984375	2	555.299193	1108.58383	1.4162	0.0007864	-2.5804	-0.0014329	-1.1642	-0.00064648	555.2976715081353	143.83	1.8933	143.83	143.46	145.36	0					90	38	5	0	0	0	0.059253	1	16793	16793		113.41	14.782	1	1703400			58946	10020	48629	48675	64635	64635					0.03388420682586002
VDLPGTYSIF	10	Unmodified	_VDLPGTYSIF_					0	0	0		tr|A0A7D6VQZ7|A0A7D6VQZ7_9CLOTFerrousirontransportproteinBOS=ClostridiumintestinaleOX=36845GN=feoBPE=3SV=1	tr|A0A7D6VQZ7|A0A7D6VQZ7_9CLOTFerrousirontransportproteinBOS=ClostridiumintestinaleOX=36845GN=feoBPE=3SV=1	tr|A0A7D6VQZ7|A0A7D6VQZ7_9CLOTFerrousirontransportproteinBOS=ClostridiumintestinaleOX=36845GN=feoBPE=3SV=1	MSMS	OvCa99_classI_Rep5	1	556.288330078125	2	556.28714	1110.55973	NaN	NaN	NaN	NaN	NaN	NaN	NaN	145.89	1	145.89	145.39	146.39	0								0	0	0	0.15238	1	17062	17062		47.657	1.6851	1				58947	34883	48630	48676	64636	64636					0.008869035205634646
VDLPRKKLA	9	Unmodified	_VDLPRKKLA_					0	0	0			REV__nc|ENSG00000068024|P56524-2|HDAC4	REV__nc|ENSG00000068024|P56524-2|HDAC4	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3341674804688	2	520.334759	1038.65496	-0.059232	-3.082E-05	-0.65104	-0.00033876	-0.71027	-0.00036958	520.3343753837619	67.127	1.729	64.466	64.099	65.828	-2.661					90	34	4	0	0	0	0.55588	1	5237	5237		37.159	0	1	916860	+		58948	16846	48631	48677	64637	64637					0.13718301502285613
VDLQQQGTV	9	Unmodified	_VDLQQQGTV_					0	0	0			REV__ENSG00000260325|ENST00000565659|HSPB9	REV__ENSG00000260325|ENST00000565659|HSPB9	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2923889160156	2	494.258914	986.503274	1.8381	0.0009085	-0.078921	-3.9007E-05	1.7592	0.00086949	494.2592703124097	85.357	0.536	85.357	85.169	85.705	0					19	12	3	0	0	0	0.027453	1	8930	8930		37.812	11.119	1	239330	+		58949	23560	48632	48678	64638	64638					0.009482756839247486
VDLSEEFT	8	Unmodified	_VDLSEEFT_					0	0	0		tr|A0A553SP03|A0A553SP03_NIACIFlagellarbasalbodyrodproteinFlgGOS=NialliacirculansOX=1397GN=flgGPE=3SV=1	tr|A0A553SP03|A0A553SP03_NIACIFlagellarbasalbodyrodproteinFlgGOS=NialliacirculansOX=1397GN=flgGPE=3SV=1	tr|A0A553SP03|A0A553SP03_NIACIFlagellarbasalbodyrodproteinFlgGOS=NialliacirculansOX=1397GN=flgGPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	470.21551513671875	2	470.218923	938.423293	-1.0139	-0.00047675	-3.0371	-0.0014281	-4.051	-0.0019048	470.2173791241091	44.101	0.48133	44.101	43.823	44.305	0					15	10	2	0	0	0	0.47599	1	2966	2966		79.939	8.5613	1	270660			58950	33987	48633	48679	64639	64639					-0.04838210709931445
VDLSGESSQVL	11	Unmodified	_VDLSGESSQVL_					0	0	0			REV__ENSG00000164880|ENST00000404767|INTS1	REV__ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	OvCa99_classI_Rep5	1	567.2901611328125	2	567.287868	1132.56118	0.49828	0.00028267	0.95195	0.00054003	1.4502	0.0008227	567.2881799345449	73.871	0.57889	73.871	73.597	74.176	0					32	14	3	0	0	0	0.36853	1	7268	7268		63.426	6.7054	1	3794500	+		58951	21030	48634	48680	64640	64640					0.0002049281868039543
VDLSGESSQVL	11	Unmodified	_VDLSGESSQVL_					0	0	0			REV__ENSG00000164880|ENST00000404767|INTS1	REV__ENSG00000164880|ENST00000404767|INTS1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	567.287868	1132.56118	-0.77583	-0.00044012	2.0043	0.001137	1.2284	0.00069688	567.2885980951481	75.478	1.4543	73.624	73.116	74.571	-1.854	-0.065525	0.00073655	NaN	63.426	57	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83154	+		58952	21030	48634	48680							0.0002049281868039543
VDLSGESSQVL	11	Unmodified	_VDLSGESSQVL_					0	0	0			REV__ENSG00000164880|ENST00000404767|INTS1	REV__ENSG00000164880|ENST00000404767|INTS1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	567.287868	1132.56118	0.42906	0.0002434	0.90393	0.00051279	1.333	0.00075619	567.2883290233452	76.513	1.0478	73.574	73.318	74.366	-2.9389	-0.1154	-0.00051187	NaN	63.426	37	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	174030	+		58953	21030	48634	48680							0.0002049281868039543
VDLSQLELPN	10	Unmodified	_VDLSQLELPN_					0	0	0			REV__nc|ENSG00000162006|Q96KJ4|MSLNL	REV__nc|ENSG00000162006|Q96KJ4|MSLNL	MULTI-MSMS	OvCa99_classI_Rep5	1	564.3013916015625	2	564.300778	1126.587	1.2176	0.00068712	1.0125	0.00057134	2.2301	0.0012585	564.3012702664091	158.01	1.9734	158.01	157.55	159.52	0					67	40	3	0	0	0	0.62299	1	18557	18557		39.253	1.4413	1	117740	+		58954	20718	48635	48681	64641	64641					0.028773870609711594
VDLTVPDSRN	10	Unmodified	_VDLTVPDSRN_					0	0	0			REV__nc|ENSG00000105388|P06731-2|CEACAM5	REV__nc|ENSG00000105388|P06731-2|CEACAM5	MULTI-SECPEP	OvCa9_classI_Rep3	3	557.8456420898438	2	558.288202	1114.56185	-0.94615	-0.00052822	0.77976	0.00043533	-0.16639	-9.2894E-05	558.7888318366246	88.064	0.71568	85.933	85.648	86.364	-2.1309					20	13	2	0	0	0	0.026802	1	5378	5378		51.335	15.717	1	27671	+		58955	17719	48636	48682	64642	64642					0.00915332258387025
VDLTVQQPD	9	Unmodified	_VDLTVQQPD_					0	0	0			REV__nc|ENSG00000073614|P29375-2|KDM5A	REV__nc|ENSG00000073614|P29375-2|KDM5A	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.30194091796875	2	507.758746	1013.50294	-0.74788	-0.00037974	-1.4708	-0.00074683	-2.2187	-0.0011266	507.7578468849195	115.47	0.74047	114.43	114.11	114.85	-1.0414					32	14	3	0	0	0	0.027462	1	8550	8550		34.173	0	1	115940	+		58956	16938	48637	48683	64643	64643					-0.003271440359526423
VDLVKVQVT	9	Unmodified	_VDLVKVQVT_					0	0	0			REV__tr|A0A553SL58|A0A553SL58_NIACI30SribosomalproteinS1OS=NialliacirculansOX=1397GN=rpsAPE=3SV=1	REV__tr|A0A553SL58|A0A553SL58_NIACI30SribosomalproteinS1OS=NialliacirculansOX=1397GN=rpsAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.2781066894531	2	500.8055	999.596446	1.2625	0.00063226	-1.5677	-0.00078512	-0.30523	-0.00015286	500.8044690489757	90.237	2.2469	88.935	88.433	90.68	-1.302					96	43	4	0	0	0	0.027462	1	7908	7908		19.104	0	1	552940	+		58957	30189	48638	48684	64644	64644					0.09663200137140393
VDMIDSIRV	9	Unmodified	_VDMIDSIRV_					0	0	0			REV__nc|ENSG00000163507|Q8TCG1-2|CIP2A	REV__nc|ENSG00000163507|Q8TCG1-2|CIP2A	MULTI-MSMS	OvCa9_classI_Rep3	3	524.2779541015625	2	524.278792	1046.54303	1.2201	0.00063968	-1.4168	-0.00074281	-0.1967	-0.00010313	524.2778574863617	62.52	2.1768	59.486	58.872	61.049	-3.0339					76	45	2	0	0	0	0.60342	1	2242	2242		31.53	1.2121	1	81064	+		58958	20842	48639	48685	64645	64645					0.021620793629836044
VDMYLKLVQL	10	Unmodified	_VDMYLKLVQL_					0	0	0		ENSG00000187741|ENST00000389301|FANCA;nc|ENSG00000187741|O15360-3|FANCA;ENST00000562424.1_1_16:89805011-89806109:-|nuORF	ENSG00000187741|ENST00000389301|FANCA	ENSG00000187741|ENST00000389301|FANCA	MULTI-MSMS	OvCa9_classI_Rep2	2	611.3515014648438	2	611.349217	1220.68388	0.023819	1.4562E-05	3.0503	0.0018648	3.0741	0.0018794	611.3510154511714	125.27	1.2863	125.03	124.66	125.95	-0.2359					68	25	4	0	0	0	0.42962	1	12209	12209		64.207	4.089	1	393690			58959	8427	48640	48686	64646	64646					0.08236658016380716
VDNCSCHQV	9	Unmodified	_VDNCSCHQV_					0	0	0		ENST00000339174.9_2_Y:16734079-16734118:+|nuORF	ENST00000339174.9_2_Y:16734079-16734118:+|nuORF	ENST00000339174.9_2_Y:16734079-16734118:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.5682373046875	2	502.699851	1003.38515	-0.32962	-0.0001657	3.4715	0.0017451	3.1419	0.0015794	502.70149343960685	56.2	0.65004	56.2	55.973	56.623	0					33	15	3	0	0	0	0.027459	1	4682	4682		36.447	12.924	1	1596300			58960	10547	48641	48687	64647	64647					-0.1164074316791357
VDNFWGPVEI	10	Unmodified	_VDNFWGPVEI_					0	0	0			REV__nc|ENSG00000145850|Q96H15-2|TIMD4	REV__nc|ENSG00000145850|Q96H15-2|TIMD4	MULTI-MSMS	OvCa99_classI_Rep5	1	588.290283203125	2	588.290214	1174.56587	0.87267	0.00051338	-0.47889	-0.00028173	0.39378	0.00023165	588.2898431689212	153.79	1.2271	153.79	153.5	154.72	0					43	24	2	0	0	0	0.55359	1	18046	18046		47.657	1.7054	1	333800	+		58961	19986	48642	48688	64648	64648					-0.0144257824788383
VDNPGHPFIK	10	Unmodified	_VDNPGHPFIK_					0	0	0		ENSG00000237289|ENST00000441322|CKMT1B;ENSG00000223572|ENST00000413453|CKMT1A;nc|ENSG00000237289|P12532-2|CKMT1A;ENST00000505135.1_1_5:80548598-80553554:+|nuORF;ENSG00000131730|ENST00000254035|CKMT2	ENSG00000237289|ENST00000441322|CKMT1B	ENSG00000237289|ENST00000441322|CKMT1B	MULTI-MSMS	OvCa99_classI_Rep5	1	562.2996826171875	2	562.298373	1122.58219	1.0891	0.00061241	0.52919	0.00029756	1.6183	0.00090997	562.2985969904474	105.6	1.0528	105.6	105.09	106.14	0					49	23	4	0	0	0	0.42962	1	11878	11878		64.207	10.856	1	4943900			58962	9250	48643	48689	64649	64649					0.02580547708839731
VDPEVLHSL	9	Unmodified	_VDPEVLHSL_					0	0	0		nc|ENSG00000167772|Q9BY76-2|ANGPTL4;ANGPTL4|p.D330Efs*46|1|0.08|ENSG00000167772|chr19:8371471-8371472|-/A|frameshift_variant;ENSG00000167772|ENST00000301455|ANGPTL4;ENST00000598255.5_1_19:8429205-8436046:+|nuORF;ENST00000594348.1_1_19:8429070-8436049:+|nuORF	nc|ENSG00000167772|Q9BY76-2|ANGPTL4	nc|ENSG00000167772|Q9BY76-2|ANGPTL4	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.7723083496094	2	504.771657	1007.52876	0.36183	0.00018264	-0.46662	-0.00023554	-0.1048	-5.2898E-05	504.7711967535326	96.567	1.8177	94.142	93.76	95.577	-2.4256					62	35	4	0	0	0	0.21231	1	8530	8530		74.255	28.283	1	256490			58963	90	48644	48690	64650	64650					0.025297502063381216
VDPEVLHSL	9	Unmodified	_VDPEVLHSL_					0	0	0		nc|ENSG00000167772|Q9BY76-2|ANGPTL4;ANGPTL4|p.D330Efs*46|1|0.08|ENSG00000167772|chr19:8371471-8371472|-/A|frameshift_variant;ENSG00000167772|ENST00000301455|ANGPTL4;ENST00000598255.5_1_19:8429205-8436046:+|nuORF;ENST00000594348.1_1_19:8429070-8436049:+|nuORF	nc|ENSG00000167772|Q9BY76-2|ANGPTL4	nc|ENSG00000167772|Q9BY76-2|ANGPTL4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	504.771657	1007.52876	-0.60222	-0.00030398	0.34363	0.00017345	-0.25859	-0.00013053	504.77162686276495	95.286	1.7356	94.258	93.923	95.658	-1.0281	0.064312	-0.00021091	NaN	74.255	58	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157880			58964	90	48644	48690							0.025297502063381216
VDPEVLHSL	9	Unmodified	_VDPEVLHSL_					0	0	0		nc|ENSG00000167772|Q9BY76-2|ANGPTL4;ANGPTL4|p.D330Efs*46|1|0.08|ENSG00000167772|chr19:8371471-8371472|-/A|frameshift_variant;ENSG00000167772|ENST00000301455|ANGPTL4;ENST00000598255.5_1_19:8429205-8436046:+|nuORF;ENST00000594348.1_1_19:8429070-8436049:+|nuORF	nc|ENSG00000167772|Q9BY76-2|ANGPTL4	nc|ENSG00000167772|Q9BY76-2|ANGPTL4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	504.771657	1007.52876	-1.2792	-0.00064571	1.1012	0.00055584	-0.17805	-8.9877E-05	504.7720317257245	96.011	1.5184	94.182	93.93	95.448	-1.8286	-0.01187	0.00055386	NaN	74.255	57	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	271730			58965	90	48644	48690							0.025297502063381216
VDPGFLKQV	9	Unmodified	_VDPGFLKQV_					0	0	0			REV__nc|ENSG00000162843|B1ANS9-2|WDR64	REV__nc|ENSG00000162843|B1ANS9-2|WDR64	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.2903747558594	2	501.784567	1001.55458	-0.34871	-0.00017498	-3.3124	-0.0016621	-3.6611	-0.0018371	501.7829178903039	35.824	0.64447	35.824	35.52	36.164	0					38	13	4	0	0	0	0.027448	1	1832	1832		44.117	8.4985	1	426360	+		58966	20784	48645	48691	64651	64651					0.05386644448606148
VDPHLGYRQV	10	Unmodified	_VDPHLGYRQV_					0	0	0			REV__TEX14|p.S1106Rfs*18|1|0.46|ENSG00000121101|chr17:58579723-58579724|-/AATCAGAGACTTTTTCACATACTTCATGTGT|frameshift_variant	REV__TEX14|p.S1106Rfs*18|1|0.46|ENSG00000121101|chr17:58579723-58579724|-/AATCAGAGACTTTTTCACATACTTCATGTGT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	591.372314453125	2	592.314554	1182.61456	-0.37269	-0.00022075	3.9017	0.002311	3.529	0.0020903	592.3165660030546	72.621	1.5665	70.221	69.645	71.211	-2.3999					56	29	3	0	0	0	0.026681	1	5911	5911		29.17	1.0886	1	138730	+		58967	18530	48646	48692	64652	64652					0.03055335111844215
VDPKALVK	8	Unmodified	_VDPKALVK_					0	0	0		ENSG00000070915|ENST00000563236|SLC12A3	ENSG00000070915|ENST00000563236|SLC12A3	ENSG00000070915|ENST00000563236|SLC12A3	MULTI-MSMS	OvCa9_classI_Rep4_	4	435.2773132324219	2	435.276378	868.538203	0.43024	0.00018728	-0.74147	-0.00032274	-0.31122	-0.00013547	435.2759022786098	74.933	1.3076	71.702	71.385	72.693	-3.2308					69	26	4	0	0	0	0.32444	3	5888	5888;5902;5915		102.77	13.82	1	935820			58968	1441	48647	48693	64653;64654;64655	64653					0.09867563282523406
VDPKGSYIN	9	Unmodified	_VDPKGSYIN_					0	0	0		tr|A0A7D6VRH2|A0A7D6VRH2_9CLOTEF2563familyselenium-dependentmolybdenumhydroxylasesystemproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02145PE=4SV=1	tr|A0A7D6VRH2|A0A7D6VRH2_9CLOTEF2563familyselenium-dependentmolybdenumhydroxylasesystemproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02145PE=4SV=1	tr|A0A7D6VRH2|A0A7D6VRH2_9CLOTEF2563familyselenium-dependentmolybdenumhydroxylasesystemproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02145PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.75799560546875	2	496.756007	991.497461	0.075313	3.7412E-05	3.5228	0.00175	3.5981	0.0017874	496.7577856449057	59.48	1.9777	56.088	55.655	57.632	-3.392					83	39	4	0	0	0	0.33652	1	3983	3983		58.782	5.8453	1	596370			58969	34931	48648	48694	64656	64656					0.0013717717223471482
VDPKGSYIN	9	Unmodified	_VDPKGSYIN_					0	0	0		tr|A0A7D6VRH2|A0A7D6VRH2_9CLOTEF2563familyselenium-dependentmolybdenumhydroxylasesystemproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02145PE=4SV=1	tr|A0A7D6VRH2|A0A7D6VRH2_9CLOTEF2563familyselenium-dependentmolybdenumhydroxylasesystemproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02145PE=4SV=1	tr|A0A7D6VRH2|A0A7D6VRH2_9CLOTEF2563familyselenium-dependentmolybdenumhydroxylasesystemproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02145PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	496.756007	991.497461	-0.31874	-0.00015833	3.9359	0.0019552	3.6171	0.0017968	496.7577898289336	59.018	1.439	56.238	55.789	57.228	-2.7801	0.075139	0.00010924	NaN	58.782	47	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100260			58970	34931	48648	48694							0.0013717717223471482
VDPLEAIQWE	10	Unmodified	_VDPLEAIQWE_					0	0	0		nc|ENSG00000235217|Q9H489|TSPY26P;ENST00000476365.2_1_20:30777007-30778297:-|nuORF	nc|ENSG00000235217|Q9H489|TSPY26P	nc|ENSG00000235217|Q9H489|TSPY26P	MULTI-MSMS	OvCa9_classI_Rep2	2	600.2991943359375	2	600.300778	1198.587	0.023114	1.3875E-05	-3.0498	-0.0018308	-3.0267	-0.0018169	600.2989237607527	71.554	2.0411	69.047	68.229	70.27	-2.5071					84	38	3	0	0	0	0.57535	1	5784	5784		25.574	0	1	1019300			58971	12465	48649	48695	64657	64657					-0.004346129390569331
VDPLPSSVEI	10	Unmodified	_VDPLPSSVEI_					0	0	0			REV__ENSG00000113716|ENST00000502717|HMGXB3	REV__ENSG00000113716|ENST00000502717|HMGXB3	MULTI-MSMS	OvCa9_classI_Rep2	2	528.2846069335938	2	528.284597	1054.55464	-1.7589	-0.00092921	1.7414	0.00091994	-0.017547	-9.2698E-06	528.2853995863809	141.02	1.0894	140.79	140.48	141.57	-0.22697					51	21	4	0	0	0	0.53885	1	14139	14139		49.442	1.7842	1	215050	+		58972	18167	48650	48696	64658	64658					0.029545996579599887
VDPMAIVVF	9	Unmodified	_VDPMAIVVF_					0	0	0		ENST00000562523.1_1_16:69375146-69375552:+|nuORF;nc|ENSG00000132603|Q9Y221-2|NIP7;ENSG00000132603|ENST00000254940|NIP7	ENST00000562523.1_1_16:69375146-69375552:+|nuORF	ENST00000562523.1_1_16:69375146-69375552:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.7720642089844	2	495.770071	989.52559	-0.76828	-0.00038089	4.4297	0.0021961	3.6614	0.0018152	495.772156309207	81.033	1.3138	78.323	78.052	79.365	-2.7106					54	26	4	0	0	0	0.34496	1	6664	6664		57.811	4.8746	1	904820			58973	4151	48651	48697	64659	64659					0.030407838279757016
VDPRIFAVL	9	Unmodified	_VDPRIFAVL_					0	0	0			REV__ENST00000467982.6_1_1:150463888-150471031:+|nuORF	REV__ENST00000467982.6_1_1:150463888-150471031:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	514.559814453125	2	515.30821	1028.60187	-0.16293	-8.3959E-05	1.4215	0.00073252	1.2586	0.00064856	515.8101769725464	100.2	3.6326	98.597	98.064	101.7	-1.6053					115	70	3	0	0	0	0.027456	1	6806	6806		38.806	0	1	383200	+		58974	26214	48652	48698	64660	64660					0.08870923719587154
VDPVLVKS	8	Unmodified	_VDPVLVKS_					0	0	0		ENSG00000148840|ENST00000278070|PPRC1;nc|ENSG00000148840|Q5VV67-2|PPRC1	ENSG00000148840|ENST00000278070|PPRC1	ENSG00000148840|ENST00000278070|PPRC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	429.56365966796875	2	428.760561	855.506569	1.6143	0.00069213	-2.3902	-0.0010248	-0.77593	-0.00033269	428.75955769648414	86.656	0.48903	84.03	83.86	84.349	-2.6269					14	9	2	0	0	0	0.028476	1	7348	7348		60.972	15.02	1	14875			58975	5427	48653	48699	64661	64661					0.07303570528563341
VDPVLVKS	8	Unmodified	_VDPVLVKS_					0	0	0		ENSG00000148840|ENST00000278070|PPRC1;nc|ENSG00000148840|Q5VV67-2|PPRC1	ENSG00000148840|ENST00000278070|PPRC1	ENSG00000148840|ENST00000278070|PPRC1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	428.760561	855.506569	-1.5892	-0.00068137	1.3568	0.00058174	-0.23237	-9.9629E-05	428.76107538766604	85.652	0.59301	84.161	83.801	84.394	-1.4906	0.17218	0.00077418	NaN	60.972	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13910			58976	5427	48653	48699							0.07303570528563341
VDPVLVKS	8	Unmodified	_VDPVLVKS_					0	0	0		ENSG00000148840|ENST00000278070|PPRC1;nc|ENSG00000148840|Q5VV67-2|PPRC1	ENSG00000148840|ENST00000278070|PPRC1	ENSG00000148840|ENST00000278070|PPRC1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	428.760561	855.506569	-0.54429	-0.00023337	1.394	0.00059771	0.84975	0.00036434	428.7609984511584	85.996	1.5005	83.776	82.937	84.437	-2.2204	-0.21306	0.00080612	NaN	60.972	35	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24385			58977	5427	48653	48699							0.07303570528563341
VDQCQTGD	8	Unmodified	_VDQCQTGD_					0	0	0			REV__ENSG00000125810|ENST00000246006|CD93	REV__ENSG00000125810|ENST00000246006|CD93	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1707458496094	2	433.17145	864.328346	2.6506	0.0011482	-2.8357	-0.0012284	-0.18511	-8.0186E-05	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.7224	3	1912	1327;1631;1912		38.806	6.8513	1	60065	+		58978	18746	48654	48700	64662;64663;64664	64664					-0.10924467452775843
VDQLEYKM	8	Unmodified	_VDQLEYKM_					0	0	0			REV__ENSG00000088854|ENST00000252032|DNAAF9	REV__ENSG00000088854|ENST00000252032|DNAAF9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.3095703125	2	513.252243	1024.48993	-0.214	-0.00010983	-0.058832	-3.0196E-05	-0.27283	-0.00014003	513.2519573372753	78.039	0.53535	75.223	74.97	75.506	-2.8165					18	10	2	0	0	0	0.028476	1	6273	6273		58.782	0	1	29391	+		58979	17184	48655	48701	64665	64665					-0.021332984196988036
VDQLLTDY	8	Unmodified	_VDQLLTDY_					0	0	0		CON__Q1A7A4	CON__Q1A7A4	CON__Q1A7A4	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.767578125	2	483.742565	965.470577	0.21659	0.00010477	1.0714	0.00051829	1.288	0.00062307	483.74287109403355	73.724	0.46742	73.724	73.44	73.907	0					13	11	2	0	0	0	0.028476	1	7208	7208		27.882	0	1	315110		+	58980	636	48656	48702	64666	64666					-0.013539314389504398
VDRAAQAAAEL	11	Unmodified	_VDRAAQAAAEL_					0	0	0			REV__ENSG00000178896|ENST00000316052|EXOSC4	REV__ENSG00000178896|ENST00000316052|EXOSC4	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.7965698242188	2	557.796195	1113.57784	0.49114	0.00027396	-1.3644	-0.00076105	-0.87324	-0.00048709	557.7953291619052	63.705	1.5015	60.23	59.916	61.417	-3.475					51	30	2	0	0	0	0.36705	1	4497	4497		63.534	0	1	994850	+		58981	22085	48657	48703	64667	64667					0.025590384952693057
VDRAYLIQAP	10	Unmodified	_VDRAYLIQAP_					0	0	0			REV__ENST00000392357.1_1_17:80014616-80015000:+|nuORF	REV__ENST00000392357.1_1_17:80014616-80015000:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.302001953125	2	573.319306	1144.62406	0.049907	2.8613E-05	-3.6231	-0.0020772	-3.5732	-0.0020486	573.3177983674625	46.316	0.30247	46.316	46.154	46.456	0					10	6	2	0	0	0	0.026915	1	3247	3247		27.882	4.8398	1	163240	+		58982	25256	48658	48704	64668	64668					0.05753103397364612
VDRFLLPAI	9	Unmodified	_VDRFLLPAI_					0	0	0			REV__nc|ENSG00000170909|Q8IYS5-6|OSCAR	REV__nc|ENSG00000170909|Q8IYS5-6|OSCAR	MULTI-MSMS	OvCa99_classI_Rep5	1	522.3154907226562	2	522.316035	1042.61752	-0.92668	-0.00048402	-3.3823	-0.0017666	-4.3089	-0.0022506	522.3141740282837	55.317	0.53395	55.317	55.107	55.641	0					22	12	3	0	0	0	0.21395	1	4526	4526		73.975	5.1286	1	998700	+		58983	21573	48659	48705	64669	64669					0.09791210236653569
VDRFLLPAI	9	Unmodified	_VDRFLLPAI_					0	0	0			REV__nc|ENSG00000170909|Q8IYS5-6|OSCAR	REV__nc|ENSG00000170909|Q8IYS5-6|OSCAR	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	522.316035	1042.61752	-0.52628	-0.00027488	-1.6082	-0.00084001	-2.1345	-0.0011149	522.315035419512	58.308	0.70358	54.926	54.407	55.111	-3.3819	-0.19521	0.0016521	NaN	73.975	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19877	+		58984	21573	48659	48705							0.09791210236653569
VDRIGLNLL	9	Unmodified	_VDRIGLNLL_					0	0	0			REV__tr|A0A7D6ZUQ2|A0A7D6ZUQ2_9CLOTAlpha-1,4glucanphosphorylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01110PE=3SV=1	REV__tr|A0A7D6ZUQ2|A0A7D6ZUQ2_9CLOTAlpha-1,4glucanphosphorylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01110PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	506.8114318847656	2	506.811116	1011.60768	-1.285	-0.00065125	-0.29635	-0.00015019	-1.5813	-0.00080144	506.8109472666925	100.58	3.0909	98.975	98.659	101.75	-1.6053					152	59	4	0	0	0	0.12365	2	6826	6826;6832		90.777	3.0224	1	2966100	+		58985	32226	48660	48706	64670;64671	64670					0.10234022231270501
VDRIGLNLL	9	Unmodified	_VDRIGLNLL_					0	0	0			REV__tr|A0A7D6ZUQ2|A0A7D6ZUQ2_9CLOTAlpha-1,4glucanphosphorylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01110PE=3SV=1	REV__tr|A0A7D6ZUQ2|A0A7D6ZUQ2_9CLOTAlpha-1,4glucanphosphorylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01110PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.8104553222656	2	506.811116	1011.60768	-0.91945	-0.00046599	-1.1845	-0.0006003	-2.1039	-0.0010663	506.81048510289196	101.22	3.3613	98.954	98.29	101.65	-2.2665					172	65	4	0	0	0	0.21231	1	9068	9068		74.255	0	1	2669900	+		58986	32226	48660	48706	64672	64672					0.10234022231270501
VDRLRELDH	9	Unmodified	_VDRLRELDH_					0	0	0			REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	REV__nc|ENSG00000178104|Q5VU43-4|PDE4DIP	MULTI-SECPEP	OvCa9_classI_Rep2	2	576.3536987304688	2	576.809636	1151.60472	-0.10278	-5.9285E-05	4.1441	0.0023904	4.0414	0.0023311	576.8114892150148	71.158	1.5176	68.651	68.177	69.695	-2.5072					76	28	4	0	0	0	0.027304	1	5787	5787		87.696	18.069	1	132700	+		58987	29026	48661	48707	64673	64673					0.03498147106461147
VDRMETKNI	9	Unmodified	_VDRMETKNI_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;ENST00000591369.5_1_17:76419989-76422610:-|nuORF	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.8367919921875	2	553.287148	1104.55974	0.99545	0.00055077	-4.262	-0.0023581	-3.2666	-0.0018073	553.284772614335	110.27	1.3677	108.67	108.23	109.59	-1.6011					78	25	5	0	0	0	0.027462	1	10108	10108		40.778	25.136	1	1056000			58988	8432	48662	48708	64674	64674					0.011645802489283597
VDRPLLEN	8	Unmodified	_VDRPLLEN_					0	0	0			REV__tr|A0A7D6VQU9|A0A7D6VQU9_9CLOTL-aspartateoxidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16635PE=3SV=1	REV__tr|A0A7D6VQU9|A0A7D6VQU9_9CLOTL-aspartateoxidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16635PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.8091735839844	2	478.263999	954.513445	-2.0864	-0.00099787	1.1041	0.00052805	-0.98235	-0.00046982	478.2658101695152	126.01	0.38937	124.59	124.39	124.78	-1.4143					11	7	2	0	0	0	0.028476	1	11999	11999		30.504	11.144	1	8437.6	+		58989	31359	48663	48709	64675	64675					0.03436883409131042
VDRRPGQGIKL	11	Unmodified	_VDRRPGQGIKL_					0	0	0		tr|A0A7D6VW02|A0A7D6VW02_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07250PE=4SV=1	tr|A0A7D6VW02|A0A7D6VW02_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07250PE=4SV=1	tr|A0A7D6VW02|A0A7D6VW02_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07250PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8697509765625	2	619.870028	1237.7255	-1.8762	-0.001163	0.9332	0.00057847	-0.94295	-0.00058451	619.8704234308321	147.79	3.8764	146.35	144.25	148.12	-1.4351					189	77	4	0	0	0	0.69808	1	14365	14365		30.318	1.1682	1	269210			58990	35241	48664	48710	64676	64676					0.11614974819940471
VDRVHLIL	8	Unmodified	_VDRVHLIL_					0	0	0			REV__ENST00000485332.7_1_X:221743-228403:-|nuORF	REV__ENST00000485332.7_1_X:221743-228403:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	482.28509521484375	2	482.800552	963.58655	-0.52921	-0.0002555	-0.57945	-0.00027976	-1.1087	-0.00053526	482.8000301506567	89.336	0.90179	87.205	86.846	87.748	-2.1309					36	17	3	0	0	0	0.028476	1	5485	5485		25.45	8.0852	1	76443	+		58991	22067	48665	48711	64677	64677					0.10330056922430231
VDRYLKRKS	9	Unmodified	_VDRYLKRKS_					0	0	0			REV__nc|ENSG00000214534|A8MWA4|ZNF705EP	REV__nc|ENSG00000214534|A8MWA4|ZNF705EP	MULTI-SECPEP	OvCa9_classI_Rep2	2	583.8018188476562	2	582.846022	1163.67749	-1.3302	-0.00077528	1.1167	0.00065084	-0.21351	-0.00012444	582.8465806480813	53.283	1.3397	50.469	49.985	51.325	-2.8139					58	26	3	0	0	0	0.027462	1	3677	3677		6.3127	0	1	79112	+		58992	22878	48666	48712	64678	64678					0.10219900899892309
VDRYLRVK	8	Unmodified	_VDRYLRVK_					0	0	0		nc|ENSG00000163485|P30542-2|ADORA1;ENSG00000163485|ENST00000337894|ADORA1;ENSG00000282608|ENST00000241356|ADORA3;ENSG00000121933|ENST00000369716|TMIGD3	nc|ENSG00000163485|P30542-2|ADORA1;ENSG00000282608|ENST00000241356|ADORA3	ENSG00000282608|ENST00000241356|ADORA3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.7653198242188	2	524.816733	1047.61891	-0.45458	-0.00023857	0.040283	2.1141E-05	-0.4143	-0.00021743	524.8167267133479	64.922	1.2603	61.437	61.163	62.423	-3.4854					55	25	3	0	0	0	0.028476	1	4622	4622		26.796	0	1	360830			58993	9605;6315	48667	48713	64679	64679					0.09700844325402613
VDSFFCDLPRV	11	Unmodified	_VDSFFCDLPRV_					0	0	0		ENSG00000176281|ENST00000315915|OR4K5	ENSG00000176281|ENST00000315915|OR4K5	ENSG00000176281|ENST00000315915|OR4K5	MULTI-MSMS	OvCa99_classI_Rep5	1	649.3143920898438	2	649.315906	1296.61726	1.1528	0.00074854	-3.7093	-0.0024085	-2.5565	-0.00166	649.3129921451787	150.87	0.96156	150.87	150.54	151.5	0					30	18	2	0	0	0	0.5466	1	17662	17662		49.536	5.1589	1	216440			58994	7598	48668	48714	64680	64680					-0.019185775455298426
VDSIQQALS	9	Unmodified	_VDSIQQALS_					0	0	0			REV__ROBO1|p.C1437Sfs*15|1|0.21|ENSG00000169855|chr3:78614773-78614774|-/TG|frameshift_variant	REV__ROBO1|p.C1437Sfs*15|1|0.21|ENSG00000169855|chr3:78614773-78614774|-/TG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	480.76690673828125	2	480.753464	959.492375	-1.3484	-0.00064825	1.3525	0.00065023	0.0041295	1.9853E-06	480.75387811253063	53.928	0.74707	51.114	50.776	51.523	-2.8139					22	14	2	0	0	0	0.027295	1	3701	3701		84.916	2.675	1	13179	+		58995	21489	48669	48715	64681	64681					0.011008733096218748
VDSKKVVLT	9	Unmodified	_VDSKKVVLT_					0	0	0			REV__nc|ENSG00000092199|P07910-3|HNRNPC	REV__nc|ENSG00000092199|P07910-3|HNRNPC	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.7571105957031	2	494.8055	987.596446	-0.37459	-0.00018535	0.40659	0.00020118	0.031999	1.5834E-05	494.80567159377074	47.404	0.5158	47.404	47.208	47.724	0					22	11	3	0	0	0	0.027462	1	3450	3450		31.53	3.6476	1	160370	+		58996	17264	48670	48716	64682	64682					0.10215200137145075
VDSRLVNPD	9	Unmodified	_VDSRLVNPD_					0	0	0			REV__ENSG00000174226|ENST00000311812|SNX31	REV__ENSG00000174226|ENST00000311812|SNX31	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.30194091796875	2	507.764363	1013.51417	-0.61863	-0.00031412	-1.9537	-0.000992	-2.5723	-0.0013061	507.76327922220634	115.04	0.74026	113.98	113.6	114.34	-1.055					32	14	3	0	0	0	0.027462	1	8550	8550		36.447	0	1	88347	+		58997	21816	48671	48717	64683	64683					0.007956780581821477
VDSRVPLNK	9	Unmodified	_VDSRVPLNK_					0	0	0			REV__tr|A0A553SMC1|A0A553SMC1_NIACIGlycosidehydrolasefamily25OS=NialliacirculansOX=1397GN=CEQ21_22285PE=3SV=1	REV__tr|A0A553SMC1|A0A553SMC1_NIACIGlycosidehydrolasefamily25OS=NialliacirculansOX=1397GN=CEQ21_22285PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.8143920898438	2	514.298373	1026.58219	-0.47042	-0.00024194	0.12521	6.4397E-05	-0.34521	-0.00017754	514.2986038675938	96.374	0.96756	94.545	94.172	95.14	-1.8286					39	18	4	0	0	0	0.027295	1	6348	6348		64.207	3.2353	1	63442	+		58998	30314	48672	48718	64684	64684					0.0699654770885445
VDSRVPLNK	9	Unmodified	_VDSRVPLNK_					0	0	0			REV__tr|A0A553SMC1|A0A553SMC1_NIACIGlycosidehydrolasefamily25OS=NialliacirculansOX=1397GN=CEQ21_22285PE=3SV=1	REV__tr|A0A553SMC1|A0A553SMC1_NIACIGlycosidehydrolasefamily25OS=NialliacirculansOX=1397GN=CEQ21_22285PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	514.298373	1026.58219	0.93006	0.00047833	1.0015	0.00051507	1.9316	0.0009934	514.2986068297205	97.004	1.2581	94.579	93.811	95.069	-2.4256	0.016648	0.00054822	NaN	64.207	39	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59596	+		58999	30314	48672	48718							0.0699654770885445
VDSSTEEDS	9	Unmodified	_VDSSTEEDS_					0	0	0			REV__FAM135A|p.W1194Cfs*23|1|0.12|ENSG00000082269|chr6:70526665-70526666|-/TTCCTGCT|frameshift_variant	REV__FAM135A|p.W1194Cfs*23|1|0.12|ENSG00000082269|chr6:70526665-70526666|-/TTCCTGCT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	484.68768310546875	2	484.688184	967.361815	0.19066	9.241E-05	-0.21569	-0.00010454	-0.025036	-1.2135E-05	484.68750179101164	112.49	1.3015	110.97	110.69	111.99	-1.5111					64	25	3	0	0	0	0.55588	1	10402	10402		37.159	8.0096	1	378830	+		59000	17084	48673	48719	64685	64685					-0.12317187199880664
VDSSTEEDS	9	Unmodified	_VDSSTEEDS_					0	0	0			REV__FAM135A|p.W1194Cfs*23|1|0.12|ENSG00000082269|chr6:70526665-70526666|-/TTCCTGCT|frameshift_variant	REV__FAM135A|p.W1194Cfs*23|1|0.12|ENSG00000082269|chr6:70526665-70526666|-/TTCCTGCT|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	484.688184	967.361815	0.2847	0.00013799	-0.67918	-0.00032919	-0.39448	-0.0001912	484.6875972543521	111.3	1.2811	111.17	110.68	111.96	-0.13961	0.13114	0.00017684	NaN	37.159	63	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	137560	+		59001	17084	48673	48719							-0.12317187199880664
VDSSTEEDS	9	Unmodified	_VDSSTEEDS_					0	0	0			REV__FAM135A|p.W1194Cfs*23|1|0.12|ENSG00000082269|chr6:70526665-70526666|-/TTCCTGCT|frameshift_variant	REV__FAM135A|p.W1194Cfs*23|1|0.12|ENSG00000082269|chr6:70526665-70526666|-/TTCCTGCT|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	484.688184	967.361815	1.446	0.00070085	-1.9628	-0.00095136	-0.51684	-0.00025051	484.6869409576807	112.07	1.2325	110.96	110.65	111.88	-1.1038	-0.070953	-0.0010675	NaN	37.159	98	24	7	NaN	NaN	NaN	NaN	0				NaN	NaN	0	296610	+		59002	17084	48673	48719							-0.12317187199880664
VDSVAQLW	8	Unmodified	_VDSVAQLW_					0	0	0		ENST00000534225.1_1_11:112024082-112024223:-|nuORF	ENST00000534225.1_1_11:112024082-112024223:-|nuORF	ENST00000534225.1_1_11:112024082-112024223:-|nuORF	MSMS	OvCa99_classI_Rep5	1	459.23822021484375	2	459.239993	916.465432	NaN	NaN	NaN	NaN	NaN	NaN	NaN	27.902	1	27.902	27.402	28.402	0								0	0	0	0.30129	1	865	865		49.442	2.6751	1				59003	13350	48674	48720	64686	64686					0.0038580948910293955
VDSYLLLEI	9	Unmodified	_VDSYLLLEI_					0	0	0		tr|A0A553ST98|A0A553ST98_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04570PE=3SV=1	tr|A0A553ST98|A0A553ST98_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04570PE=3SV=1	tr|A0A553ST98|A0A553ST98_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04570PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	532.7987670898438	2	532.79734	1063.58013	1.1695	0.00062309	-1.1102	-0.0005915	0.059293	3.1591E-05	532.7965885921914	150.22	1.6615	150.22	149.89	151.55	0					86	32	4	0	0	0	0.091859	1	17593	17593		99.375	12.44	1	1399900			59004	34471	48675	48721	64687	64687					0.05088074180366675
VDTDILFLR	9	Unmodified	_VDTDILFLR_					0	0	0		ENSG00000151233|ENST00000398675|GXYLT1;nc|ENSG00000151233|Q4G148-2|GXYLT1;GXYLT1|p.T239Hfs*15|1|0.3|ENSG00000151233|chr12:42105967-42105967|T/-|frameshift_variant	ENSG00000151233|ENST00000398675|GXYLT1	ENSG00000151233|ENST00000398675|GXYLT1	MULTI-MSMS	OvCa9_classI_Rep3	3	546.3070678710938	2	546.308406	1090.60226	-0.64672	-0.00035331	0.015544	8.4917E-06	-0.63118	-0.00034482	546.3082137989046	132.95	1.326	131.82	131.49	132.81	-1.1249					59	26	3	0	0	0	0.38529	1	10668	10668		53.351	0	1	118050			59005	5543	48676	48722	64688	64688					0.060582986487816015
VDTHLTVSM	9	Unmodified	_VDTHLTVSM_					0	0	0			REV__nc|ENSG00000240344|Q9H2H8-2|PPIL3	REV__nc|ENSG00000240344|Q9H2H8-2|PPIL3	MULTI-SECPEP	OvCa9_classI_Rep3	3	502.2882080078125	2	501.749867	1001.48518	-1.4247	-0.00071484	-1.7057	-0.00085583	-3.1304	-0.0015707	501.74884001074514	85.28	1.1378	83.06	82.498	83.636	-2.2204					41	22	2	0	0	0	0.027448	1	4952	4952		35.618	12.096	1	109100	+		59006	29155	48677	48723	64689	64689					-0.015501825624596677
VDTHLTVSM	9	Unmodified	_VDTHLTVSM_					0	0	0			REV__nc|ENSG00000240344|Q9H2H8-2|PPIL3	REV__nc|ENSG00000240344|Q9H2H8-2|PPIL3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	501.749867	1001.48518	0.86597	0.0004345	-4.0434	-0.0020288	-3.1774	-0.0015943	501.7477835579396	85.65	1.1819	83.004	82.61	83.792	-2.6463	-0.023817	-0.0020925	NaN	35.618	46	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77853	+		59007	29155	48677	48723							-0.015501825624596677
VDTIPQVI	8	Unmodified	_VDTIPQVI_					0	0	0		tr|A0A7D6ZVA5|A0A7D6ZVA5_9CLOTGerWfamilysporulationproteinOS=ClostridiumintestinaleOX=36845GN=ytfJPE=4SV=1	tr|A0A7D6ZVA5|A0A7D6ZVA5_9CLOTGerWfamilysporulationproteinOS=ClostridiumintestinaleOX=36845GN=ytfJPE=4SV=1	tr|A0A7D6ZVA5|A0A7D6ZVA5_9CLOTGerWfamilysporulationproteinOS=ClostridiumintestinaleOX=36845GN=ytfJPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	442.2720947265625	2	442.758018	883.501483	1.4875	0.00065861	-1.4141	-0.00062609	0.073449	3.252E-05	442.75729621774207	95.515	1.5873	94.486	94.12	95.707	-1.0281					79	31	3	0	0	0	0.028476	1	8689	8689		29.15	13.508	1	188040			59008	35797	48678	48724	64690	64690					0.055072666659384595
VDTLFYDPK	9	Unmodified	_VDTLFYDPK_					0	0	0		tr|A0A553SFL3|A0A553SFL3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09110PE=3SV=1	tr|A0A553SFL3|A0A553SFL3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09110PE=3SV=1	tr|A0A553SFL3|A0A553SFL3_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09110PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.8470458984375	2	549.279315	1096.54408	-0.44211	-0.00024284	-2.0406	-0.0011209	-2.4827	-0.0013637	549.2797986687914	71.393	0.19872	71.393	71.267	71.466	0					6	4	2	0	0	0	0.027462	1	6901	6901		24.203	0	1	125130			59009	33048	48679	48725	64691	64691					-0.00033382996502950846
VDTVEEAHI	9	Unmodified	_VDTVEEAHI_					0	0	0		ENST00000263826.9_1_1:243667799-243667916:-|nuORF	ENST00000263826.9_1_1:243667799-243667916:-|nuORF	ENST00000263826.9_1_1:243667799-243667916:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	506.75152587890625	2	506.750921	1011.48729	-0.7762	-0.00039334	0.074788	3.7899E-05	-0.70141	-0.00035544	506.7508954668636	42.093	0.55534	42.093	41.897	42.453	0					17	12	3	0	0	0	0.27546	1	2681	2681		65.803	2.8247	1	201840			59010	9917	48680	48726	64692	64692					-0.017994305530010024
VDTVLSPTSP	10	Unmodified	_VDTVLSPTSP_					0	0	0		nc|ENSG00000170921|Q9HCD6|TANC2;nc|ENSG00000170921|Q9HCD6-2|TANC2;ENSG00000170921|ENST00000689528|TANC2	nc|ENSG00000170921|Q9HCD6|TANC2	nc|ENSG00000170921|Q9HCD6|TANC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.75103759765625	2	508.268947	1014.52334	-0.22399	-0.00011385	0.58978	0.00029976	0.36578	0.00018592	508.7711123915422	78.29	0.38351	75.474	75.312	75.696	-2.8165					9	7	2	0	0	0	0.026915	1	6301	6301		27.882	0	1	45113			59011	7153	48681	48727	64693	64693					0.01666026623865946
VDVDVPKL	8	Unmodified	_VDVDVPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep4_	4	442.7590026855469	2	442.758018	883.501483	0.89447	0.00039603	-1.1091	-0.00049108	-0.21467	-9.5048E-05	442.7575892581801	96.782	1.6624	94.357	94.015	95.678	-2.4256					75	32	4	0	0	0	0.53252	1	8562	8562		74.255	13.283	1	302290			59012	3687	48682	48728	64694	64694					0.055072666659384595
VDVEIGLAKLI	11	Unmodified	_VDVEIGLAKLI_					0	0	0			REV__nc|ENSG00000133135|Q8TEB7-2|RNF128	REV__nc|ENSG00000133135|Q8TEB7-2|RNF128	MULTI-MSMS	OvCa99_classI_Rep5	1	585.371826171875	2	585.360639	1168.70673	1.5903	0.00093093	-0.19992	-0.00011703	1.3904	0.0008139	585.3604305986904	126.21	1.2449	126.21	125.81	127.05	0					67	26	4	0	0	0	0.36853	1	14593	14593		63.426	3.4957	1	865220	+		59013	19132	48683	48729	64695	64695					0.1291200040552667
VDVEIGLAKLI	11	Unmodified	_VDVEIGLAKLI_					0	0	0			REV__nc|ENSG00000133135|Q8TEB7-2|RNF128	REV__nc|ENSG00000133135|Q8TEB7-2|RNF128	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	585.360639	1168.70673	1.5903	0.00093093	-0.19992	-0.00011703	1.3904	0.0008139	585.3604305986904	126.21	1.2449	126.21	125.81	127.05	0	0	0	NaN	63.426	67	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	865220	+		59014	19132	48683	48729							0.1291200040552667
VDVFRPSLL	9	Unmodified	_VDVFRPSLL_					0	0	0			REV__ENSG00000153207|ENST00000648844|AHCTF1;REV__ENST00000470300.5_1_1:247027247-247061635:-|nuORF	REV__ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MSMS	OvCa9_classI_Rep2	2	523.305419921875	2	523.305667	1044.59678	0.3552	0.00018588	-1.1012	-0.00057627	-0.74601	-0.00039039	523.3049818602126	107.67	1.863	107.37	107.07	108.93	-0.30836					109	37	6	0	0	0	0.27001	1	10091	10091		66.429	2.222	1	586410	+		59015	20327;26259	48684	48730	64696	64696					0.0762661985700106
VDVHAAFFHG	10	Unmodified	_VDVHAAFFHG_					0	0	0		ENST00000490639.5_1_3:148895590-148939579:-|nuORF;ENSG00000047457|ENST00000264613|CP;ENST00000489736.5_1_3:148904295-148925363:-|nuORF	ENST00000490639.5_1_3:148895590-148939579:-|nuORF	ENST00000490639.5_1_3:148895590-148939579:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.8074951171875	2	550.269616	1098.52468	-0.25162	-0.00013846	1.4436	0.00079437	1.192	0.00065591	550.269941256758	69.085	0.8378	65.595	65.113	65.951	-3.4902					24	16	2	0	0	0	0.026697	1	5182	5182		29.15	0	1	26971			59016	1145	48685	48731	64697	64697					-0.02064294496722141
VDVHMELSY	9	Unmodified	_VDVHMELSY_					0	0	0			REV__tr|A0A7D6ZW54|A0A7D6ZW54_9CLOTPhosphatepropanoyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17660PE=3SV=1	REV__tr|A0A7D6ZW54|A0A7D6ZW54_9CLOTPhosphatepropanoyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17660PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.789306640625	2	546.755149	1091.49575	0.9852	0.00053867	3.9483	0.0021588	4.9335	0.0026974	546.7566288897824	155.8	0.30681	155.8	155.68	155.99	0					8	5	2	0	0	0	0.027462	1	18261	18261		51.335	29.633	1	15019	+		59017	32272	48686	48732	64698	64698					-0.04634199908014125
VDVPENTVILD	11	Unmodified	_VDVPENTVILD_					0	0	0		ENSG00000107771|ENST00000372088|CCSER2;CCSER2|p.A763Efs*315|1|0.03|ENSG00000107771|chr10:84477626-84477627|-/AA|frameshift_variant;nc|ENSG00000107771|Q9H7U1|CCSER2;ENST00000498300.5_1_10:86198319-86273265:+|nuORF;nc|ENSG00000107771|Q9H7U1-4|CCSER2	ENSG00000107771|ENST00000372088|CCSER2	ENSG00000107771|ENST00000372088|CCSER2	MULTI-SECPEP	OvCa99_classI_Rep5	1	606.3517456054688	2	607.319168	1212.62378	1.0105	0.00061367	-0.6984	-0.00042415	0.31206	0.00018952	607.3193496260637	132.32	0.42279	132.32	132.18	132.6	0					11	8	2	0	0	0	0.025551	1	15365	15365		37.508	19.246	1	28585			59018	2615	48687	48733	64699	64699					0.025976388868684808
VDVPRLFSI	9	Unmodified	_VDVPRLFSI_					0	0	0			REV__TBK1|p.E437Nfs*2|1|0.06|ENSG00000183735|chr12:64485985-64485985|G/-|frameshift_variant	REV__TBK1|p.E437Nfs*2|1|0.06|ENSG00000183735|chr12:64485985-64485985|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3027954101562	2	523.305667	1044.59678	-0.69596	-0.0003642	-3.2951	-0.0017244	-3.9911	-0.0020886	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.6653	1	13899	13899		24.203	0	1	130240	+		59019	22380	48688	48734	64700	64700					0.0762661985700106
VDVPRLFSI	9	Unmodified	_VDVPRLFSI_					0	0	0			REV__TBK1|p.E437Nfs*2|1|0.06|ENSG00000183735|chr12:64485985-64485985|G/-|frameshift_variant	REV__TBK1|p.E437Nfs*2|1|0.06|ENSG00000183735|chr12:64485985-64485985|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.3064575195312	2	523.305667	1044.59678	-0.97551	-0.00051049	0.61481	0.00032173	-0.3607	-0.00018876	523.3058336734236	109.12	1.9233	107.4	107.13	109.05	-1.7256					82	36	4	0	0	0	0.22961	2	10010	10010;10022		71.296	10.324	1	878890	+		59020	22380	48688	48734	64701;64702	64701					0.0762661985700106
VDVRVPLFI	9	Unmodified	_VDVRVPLFI_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000584025.1_1_17:73738673-73744941:+|nuORF	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.3236083984375	2	529.32386	1056.63317	1.5855	0.00083925	-2.3365	-0.0012368	-0.75102	-0.00039753	529.3226028011923	136.4	1.1682	134.86	134.6	135.76	-1.5437					62	23	4	0	0	0	0.3249	1	13224	13224		60.118	10.677	1	101290			59021	4140	48689	48735	64703	64703					0.10711496753697247
VDVRVPLFI	9	Unmodified	_VDVRVPLFI_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000584025.1_1_17:73738673-73744941:+|nuORF	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	529.32386	1056.63317	-0.71815	-0.00038014	0.054736	2.8973E-05	-0.66342	-0.00035116	529.3237552531555	135.22	1.1763	134.99	134.54	135.72	-0.22697	0.061743	0.00067446	NaN	60.118	51	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67938			59022	4140	48689	48735							0.10711496753697247
VDVSDLVGAL	10	Unmodified	_VDVSDLVGAL_					0	0	0			REV__ENSG00000169105|ENST00000306243|CHST14	REV__ENSG00000169105|ENST00000306243|CHST14	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2583312988281	2	494.27149	986.528426	-0.52407	-0.00025903	0.2758	0.00013632	-0.24827	-0.00012271	494.27153658499486	68.496	0.62354	68.496	68.192	68.815	0					39	14	4	0	0	0	0.026639	1	6500	6500		44.117	13.799	1	1532600	+		59023	21432	48690	48736	64704	64704					0.034623304864680904
VDVSLPKL	8	Unmodified	_VDVSLPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep4_	4	435.76971435546875	2	435.768386	869.522219	-0.31477	-0.00013716	0.19307	8.4135E-05	-0.12169	-5.303E-05	435.7683670187142	106.31	1.6574	104.29	103.9	105.55	-2.0161					72	31	4	0	0	0	0.4531	2	9672	9672;9684		82.241	15.811	1	244900			59024	3687	48691	48737	64705;64706	64705					0.08223857045607019
VDVSLPKL	8	Unmodified	_VDVSLPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MATCH	OvCa9_classI_Rep2	2		2	435.768386	869.522219	-0.038694	-1.6862E-05	0.076735	3.3439E-05	0.038041	1.6577E-05	435.7683119545509	105.08	1.2894	104.64	104.21	105.5	-0.43642	0.2203	7.4954E-05	NaN	82.241	62	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	192500			59025	3687	48691	48737							0.08223857045607019
VDVSLPKL	8	Unmodified	_VDVSLPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MATCH	OvCa9_classI_Rep3	3		2	435.768386	869.522219	0.83537	0.00036403	-1.0729	-0.00046752	-0.23749	-0.00010349	435.76780658513997	105.67	1.9769	104.33	103.47	105.44	-1.3482	-0.092982	-0.00092696	NaN	82.241	75	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222160			59026	3687	48691	48737							0.08223857045607019
VDVSLPKV	8	Unmodified	_VDVSLPKV_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep2	2	428.75982666015625	2	428.760561	855.506569	-0.71253	-0.00030551	0.71599	0.00030699	0.0034558	1.4817E-06	428.76078178002126	94.242	2.4443	93.143	92.696	95.14	-1.0995					113	48	4	0	0	0	0.052043	6	8447	8435;8441;8447;8453;8459;8467		161.9	44.995	1	910210			59027	3687	48692	48738	64707;64708;64709;64710;64711;64712	64709					0.07303570528563341
VDVSLPKV	8	Unmodified	_VDVSLPKV_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep3	3	428.76129150390625	2	428.760561	855.506569	0.0075819	3.2508E-06	-0.10604	-4.5466E-05	-0.098458	-4.2215E-05	428.76041657774715	94.979	2.1472	93.083	92.561	94.709	-1.8956					118	42	4	0	0	0	0.082392	5	6156	6156;6168;6174;6180;6192		148.04	28.486	1	1311200			59028	3687	48692	48738	64713;64714;64715;64716;64717	64713					0.07303570528563341
VDVSLPKV	8	Unmodified	_VDVSLPKV_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep4_	4	428.7615966796875	2	428.760561	855.506569	-0.58625	-0.00025136	0.4078	0.00017485	-0.17845	-7.6511E-05	428.7606629974035	95.506	1.9118	93.037	92.561	94.473	-2.4685					106	37	4	0	0	0	0.082392	4	8422	8397;8410;8422;8436		148.04	39.955	1	1234700			59029	3687	48692	48738	64718;64719;64720;64721	64720					0.07303570528563341
VDVSVPKL	8	Unmodified	_VDVSVPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep2	2	428.7606201171875	2	428.760561	855.506569	-0.71253	-0.00030551	0.71599	0.00030699	0.0034558	1.4817E-06	428.76078178002126	94.242	2.4443	93.143	92.696	95.14	-1.0995					113	48	4	0	0	0	0.11987	2	8425	8425;8429		138.83	25.414	1	910210			59030	3687	48693	48739	64722;64723	64722					0.07303570528563341
VDVSVPKL	8	Unmodified	_VDVSVPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep3	3	428.7615661621094	2	428.760561	855.506569	0.0075819	3.2508E-06	-0.10604	-4.5466E-05	-0.098458	-4.2215E-05	428.76041657774715	94.979	2.1472	93.083	92.561	94.709	-1.8956					118	42	4	0	0	0	0.19367	2	6162	6162;6186		125.81	0	1	1311200			59031	3687	48693	48739	64724;64725	64724					0.07303570528563341
VDVSVPKV	8	Unmodified	_VDVSVPKV_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	OvCa9_classI_Rep2	2	421.7757263183594	2	421.752736	841.490919	-0.12665	-5.3416E-05	-0.12788	-5.3932E-05	-0.25453	-0.00010735	421.7528533159964	83.35	1.6279	81.751	81.321	82.948	-1.5988					82	32	5	0	0	0	0.028476	1	7123	7123		34.173	0	1	101100			59032	3687	48694	48740	64726	64726					0.06383284011531032
VDVSVPKV	8	Unmodified	_VDVSVPKV_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MATCH	OvCa9_classI_Rep3	3		2	421.752736	841.490919	-0.36563	-0.00015421	0.56378	0.00023778	0.19815	8.3571E-05	421.7528471157151	84.054	1.5553	81.793	81.39	82.945	-2.261	0.053224	0.00040411	NaN	71.877	69	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236100			59033	3687	48694	48740							0.06383284011531032
VDWLTEKM	8	Unmodified	_VDWLTEKM_					0	0	0		ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000497177.1_1_3:186504924-186505672:+|nuORF;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENST00000575978.1_1_17:78111144-78112096:-|nuORF;ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000161960|ENST00000293831|EIF4A1;ZNF586-EIF4A1|4|fusion;ZNF586-EIF4A1|1|fusion;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ZNF586-EIF4A1|3|fusion;nc|ENSG00000161960|P60842-2|EIF4A1;ZNF586-EIF4A1|2|fusion;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000156976|ENST00000323963|EIF4A2;ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000156976|ENST00000323963|EIF4A2	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.25604248046875	2	511.254785	1020.49502	-0.37059	-0.00018947	0.43616	0.00022299	0.065569	3.3523E-05	511.25479364147463	102.94	1.4119	100.74	100.36	101.77	-2.1994					50	26	3	0	0	0	0.33046	1	9280	9280		101.6	35.171	1	271920			59034	5867;6146	48695	48741	64727	64727					-0.014409945570719174
VDWLTEKM	8	Unmodified	_VDWLTEKM_					0	0	0		ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000497177.1_1_3:186504924-186505672:+|nuORF;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENST00000575978.1_1_17:78111144-78112096:-|nuORF;ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000161960|ENST00000293831|EIF4A1;ZNF586-EIF4A1|4|fusion;ZNF586-EIF4A1|1|fusion;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ZNF586-EIF4A1|3|fusion;nc|ENSG00000161960|P60842-2|EIF4A1;ZNF586-EIF4A1|2|fusion;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000156976|ENST00000323963|EIF4A2;ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000156976|ENST00000323963|EIF4A2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	511.254785	1020.49502	-1.224	-0.00062576	1.0755	0.00054988	-0.14842	-7.5879E-05	511.2551153082287	101.58	1.1394	100.82	100.47	101.61	-0.76401	0.042128	0.00043077	NaN	101.6	49	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	224150			59035	5867;6146	48695	48741							-0.014409945570719174
VDWLTEKM	8	Unmodified	_VDWLTEKM_					0	0	0		ENSG00000156976|ENST00000323963|EIF4A2;nc|ENSG00000156976|Q14240-2|EIF4A2;ENST00000497177.1_1_3:186504924-186505672:+|nuORF;ENST00000492144.5_1_3:186503809-186505672:+|nuORF;ENST00000429589.5_1_3:186502413-186505273:+|nuORF;ENST00000475653.5_1_3:186502413-186505086:+|nuORF;ENST00000468362.5_1_3:186503755-186505556:+|nuORF;ENST00000575978.1_1_17:78111144-78112096:-|nuORF;ENSG00000141543|ENST00000649764|EIF4A3;ENSG00000161960|ENST00000293831|EIF4A1;ZNF586-EIF4A1|4|fusion;ZNF586-EIF4A1|1|fusion;ENST00000581621.1_1_17:7476159-7481249:+|nuORF;ZNF586-EIF4A1|3|fusion;nc|ENSG00000161960|P60842-2|EIF4A1;ZNF586-EIF4A1|2|fusion;ENST00000578324.5_1_17:7477602-7481249:+|nuORF;ENST00000581544.5_1_17:7477924-7481249:+|nuORF	ENSG00000156976|ENST00000323963|EIF4A2;ENSG00000161960|ENST00000293831|EIF4A1	ENSG00000156976|ENST00000323963|EIF4A2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	511.254785	1020.49502	-0.55233	-0.00028238	0.38499	0.00019683	-0.16734	-8.5555E-05	511.25480825241266	102.29	1.1472	100.77	100.32	101.47	-1.5211	-0.0048999	-0.00027533	NaN	101.6	44	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	254350			59036	5867;6146	48695	48741							-0.014409945570719174
VDWTLEGPL	9	Unmodified	_VDWTLEGPL_					0	0	0			REV__ENST00000442009.6_1_9:37489340-37503196:+|nuORF	REV__ENST00000442009.6_1_9:37489340-37503196:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.746337890625	2	515.266207	1028.51786	-0.38806	-0.00019995	-0.18299	-9.4286E-05	-0.57104	-0.00029424	515.2663721845651	96.301	0.45088	94.472	94.221	94.672	-1.8286					12	8	2	0	0	0	0.027462	1	6295	6295		30.504	5.0535	1	15118	+		59037	25850	48696	48742	64728	64728					0.004743478320506256
VDWTLEGPL	9	Unmodified	_VDWTLEGPL_					0	0	0			REV__ENST00000442009.6_1_9:37489340-37503196:+|nuORF	REV__ENST00000442009.6_1_9:37489340-37503196:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.266207	1028.51786	-0.0035015	-1.8042E-06	0.33167	0.0001709	0.32817	0.0001691	515.2657362523057	95.492	0.59486	94.464	94.219	94.813	-1.0281	-0.0043526	0.00030515	NaN	23.042	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11441	+		59038	25850	48696	48742							0.004743478320506256
VDYSVVKIP	9	Unmodified	_VDYSVVKIP_					0	0	0		CAD|p.C736S|1|0.04|ENSG00000084774|chr2:27226881-27226881|T/A|missense_variant	CAD|p.C736S|1|0.04|ENSG00000084774|chr2:27226881-27226881|T/A|missense_variant	CAD|p.C736S|1|0.04|ENSG00000084774|chr2:27226881-27226881|T/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.293212890625	2	510.292225	1018.5699	-0.60264	-0.00030752	-0.22965	-0.00011719	-0.83229	-0.00042471	510.2919760033697	79.571	1.3508	76.82	76.514	77.865	-2.7514					83	27	5	0	0	0	0.31747	1	6483	6483		60.972	4.2509	1	972660			59039	175	48697	48743	64729	64729					0.061355112458159056
VEAEARARAK	10	Unmodified	_VEAEARARAK_					0	0	0		nc|ENSG00000197785|Q9NVI7-3|ATAD3A;ENSG00000197785|ENST00000378756|ATAD3A;nc|ENSG00000197785|Q9NVI7|ATAD3A	nc|ENSG00000197785|Q9NVI7-3|ATAD3A	nc|ENSG00000197785|Q9NVI7-3|ATAD3A	MULTI-MSMS	OvCa9_classI_Rep2	2	550.8143310546875	2	550.812179	1099.60981	0.44129	0.00024307	1.5587	0.00085854	2	0.0011016	550.8129439494999	106.56	1.7676	106.25	105.88	107.64	-0.30836					58	35	2	0	0	0	0.50999	1	9925	9925		52.937	8.5595	1	234630			59040	8750	48698	48744	64730	64730					0.06398450969072655
VEAEESAPP	9	Unmodified	_VEAEESAPP_					0	0	0			REV__ENST00000481848.6_2_6:127837311-127837734:-|nuORF	REV__ENST00000481848.6_2_6:127837311-127837734:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.28021240234375	2	464.716547	927.418542	1.1398	0.00052969	-3.96	-0.0018403	-2.8202	-0.0013106	464.7142727532529	81.553	0.12012	81.553	81.493	81.613	0					4	2	2	0	0	0	0.027462	1	8410	8410		24.203	3.7209	1	90818	+		59041	26489	48699	48745	64731	64731					-0.0480709485270836
VEAEEYRL	8	Unmodified	_VEAEEYRL_					0	0	0			REV__ENSG00000138592|ENST00000307179|USP8	REV__ENSG00000138592|ENST00000307179|USP8	MULTI-SECPEP	OvCa9_classI_Rep2	2	504.2981262207031	2	504.753464	1007.49238	-1.4314	-0.00072253	0.80727	0.00040747	-0.62417	-0.00031505	504.7539290363788	102.94	1.2831	102.25	101.34	102.62	-0.68459					44	25	2	0	0	0	0.028476	1	9525	9525		52.299	18.784	1	27580	+		59042	19544	48700	48746	64732	64732					-0.011071266903741162
VEAEEYRL	8	Unmodified	_VEAEEYRL_					0	0	0			REV__ENSG00000138592|ENST00000307179|USP8	REV__ENSG00000138592|ENST00000307179|USP8	MULTI-MATCH	OvCa9_classI_Rep3	3		2	504.753464	1007.49238	-0.40459	-0.00020422	0.28064	0.00014165	-0.12395	-6.2565E-05	504.75355319144535	103.47	0.8411	102.04	101.76	102.6	-1.4347	-0.054555	-0.00045658	NaN	52.299	29	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77478	+		59043	19544	48700	48746							-0.011071266903741162
VEAEEYRL	8	Unmodified	_VEAEEYRL_					0	0	0			REV__ENSG00000138592|ENST00000307179|USP8	REV__ENSG00000138592|ENST00000307179|USP8	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	504.753464	1007.49238	-0.90509	-0.00045685	0.90034	0.00045445	-0.0047475	-2.3963E-06	504.7538509624481	104.1	0.84024	101.98	101.75	102.59	-2.1192	-0.10852	0.00016901	NaN	52.299	34	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88339	+		59044	19544	48700	48746							-0.011071266903741162
VEAEGLHEAL	10	Unmodified	_VEAEGLHEAL_					0	0	0			REV__ENST00000462189.1_1_2:74688404-74690534:-|nuORF	REV__ENST00000462189.1_1_2:74688404-74690534:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.8152465820312	2	534.272021	1066.52949	-0.82201	-0.00043918	-1.6367	-0.00087445	-2.4587	-0.0013136	534.2707635867137	75.72	0.82368	72.782	72.304	73.128	-2.9389					23	16	2	0	0	0	0.026639	1	5950	5950		63.306	13.282	1	28384	+		59045	18231	48701	48747	64733	64733					-0.0011145514463350992
VEAENKGLAV	10	Unmodified	_VEAENKGLAV_					0	0	0			REV__tr|A0A7D6VSN8|A0A7D6VSN8_9CLOTABC3transporterpermeaseproteindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13645PE=4SV=1	REV__tr|A0A7D6VSN8|A0A7D6VSN8_9CLOTABC3transporterpermeaseproteindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13645PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	515.2832641601562	2	515.282389	1028.55022	0.94124	0.00048501	-1.1969	-0.00061674	-0.25566	-0.00013174	515.2818157223961	106.61	4.2629	105.34	104.28	108.54	-1.267					165	82	5	0	0	0	0.59317	1	7616	7616		42.864	1.4377	1	4317700	+		59046	31525	48702	48748	64734	64734					0.03709135235044414
VEAFILILI	9	Unmodified	_VEAFILILI_					0	0	0			REV__ENSG00000185883|ENST00000330398|ATP6V0C	REV__ENSG00000185883|ENST00000330398|ATP6V0C	MULTI-MSMS	OvCa99_classI_Rep5	1	515.8302001953125	2	515.830986	1029.64742	-0.12488	-6.4415E-05	-3.9004	-0.002012	-4.0253	-0.0020764	515.8288744311794	71.729	0.90448	71.729	71.507	72.412	0					50	21	4	0	0	0	0.44294	1	6947	6947		47.916	0.25827	1	3726600	+		59047	22541	48703	48749	64735	64735					0.13378149181994559
VEAGAKKATI	10	Unmodified	_VEAGAKKATI_					0	0	0			REV__tr|A0A7D6VSJ4|A0A7D6VSJ4_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10920PE=4SV=1	REV__tr|A0A7D6VSJ4|A0A7D6VSJ4_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10920PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.3241271972656	2	494.295299	986.576045	-0.59224	-0.00029274	3.5926	0.0017758	3.0004	0.0014831	494.2969453341512	115.64	1.6288	114.6	114.01	115.64	-1.0414					64	32	3	0	0	0	0.026551	1	8621	8621		51.193	5.2204	1	89619	+		59048	31510	48704	48750	64736	64736					0.08222029477337855
VEAGCVEISE	10	Unmodified	_VEAGCVEISE_					0	0	0			REV__tr|A0A7D7AGL9|A0A7D7AGL9_9CLOTPhosphoribosylformylglycinamidinesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09215PE=4SV=1	REV__tr|A0A7D7AGL9|A0A7D7AGL9_9CLOTPhosphoribosylformylglycinamidinesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09215PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.78759765625	2	518.23679	1034.45903	0.54686	0.0002834	-8.2555E-05	-4.2783E-08	0.54678	0.00028336	518.7381625379071	80.007	1.2503	78.312	77.767	79.017	-1.6951					55	24	3	0	0	0	0.026782	1	6751	6751		30.318	11.214	1	47913	+		59049	32724	48705	48751	64737	64737					-0.05682496524605085
VEAGCVEISE	10	Unmodified	_VEAGCVEISE_					0	0	0			REV__tr|A0A7D7AGL9|A0A7D7AGL9_9CLOTPhosphoribosylformylglycinamidinesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09215PE=4SV=1	REV__tr|A0A7D7AGL9|A0A7D7AGL9_9CLOTPhosphoribosylformylglycinamidinesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09215PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	518.23679	1034.45903	0.46653	0.00024177	1.1057	0.00057304	1.5723	0.00081481	518.738727741922	80.289	0.91648	77.949	77.66	78.577	-2.3399	-0.18147	0.00056649	NaN	37.812	46	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133550	+		59050	32724	48705	48751							-0.05682496524605085
VEAIDGILYH	10	Unmodified	_VEAIDGILYH_					0	0	0			REV__tr|A0A553SRX9|A0A553SRX9_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_02000PE=4SV=1	REV__tr|A0A553SRX9|A0A553SRX9_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_02000PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	564.32568359375	2	565.298039	1128.58152	-0.63846	-0.00036092	1.612	0.00091126	0.97354	0.00055034	565.2986328679309	102.49	0.77933	100.97	100.58	101.36	-1.5211					21	10	3	0	0	0	0.026639	1	7043	7043		44.117	17.069	1	85200	+		59051	30776	48706	48752	64738	64738					0.02237708269126415
VEAITLGHDL	10	Unmodified	_VEAITLGHDL_					0	0	0		tr|A0A7D6VYD7|A0A7D6VYD7_9CLOTDeoxyguanosinetriphosphatetriphosphohydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16385PE=4SV=1	tr|A0A7D6VYD7|A0A7D6VYD7_9CLOTDeoxyguanosinetriphosphatetriphosphohydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16385PE=4SV=1	tr|A0A7D6VYD7|A0A7D6VYD7_9CLOTDeoxyguanosinetriphosphatetriphosphohydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16385PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.8152465820312	2	534.290214	1066.56587	-0.77119	-0.00041204	-0.87605	-0.00046806	-1.6472	-0.0008801	534.2895567466609	75.51	1.1083	72.571	72.304	73.412	-2.9389					59	22	5	0	0	0	0.026688	1	5950	5950		49.442	0	1	485110			59052	35329	48707	48753	64739	64739					0.03525421752101465
VEAKCLTVN	9	Unmodified	_VEAKCLTVN_					0	0	0		nc|ENSG00000142784|Q8N5D0-5|WDTC1;ENST00000491239.2_1_1:27614218-27630434:+|nuORF;nc|ENSG00000142784|Q8N5D0-3|WDTC1;nc|ENSG00000142784|Q8N5D0-6|WDTC1;nc|ENSG00000142784|Q8N5D0-4|WDTC1;nc|ENSG00000142784|Q8N5D0-2|WDTC1;ENSG00000142784|ENST00000319394|WDTC1	nc|ENSG00000142784|Q8N5D0-5|WDTC1	nc|ENSG00000142784|Q8N5D0-5|WDTC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.7599182128906	2	488.760235	975.505917	-0.34209	-0.0001672	-2.4463	-0.0011957	-2.7884	-0.0013629	488.7589893675679	69.269	1.9571	65.787	65.221	67.178	-3.4812					98	39	4	0	0	0	0.38969	1	5152	5152		52.937	3.4952	1	1253600			59053	15071	48708	48754	64740	64740					0.017184078172022055
VEALEYGVE	9	Unmodified	_VEALEYGVE_					0	0	0		tr|A0A7D6ZYS3|A0A7D6ZYS3_9CLOTBifunctional4-hydroxy-2-oxoglutaratealdolase/2-dehydro-3-deoxy-phosphogluconatealdolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03650PE=3SV=1	tr|A0A7D6ZYS3|A0A7D6ZYS3_9CLOTBifunctional4-hydroxy-2-oxoglutaratealdolase/2-dehydro-3-deoxy-phosphogluconatealdolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03650PE=3SV=1	tr|A0A7D6ZYS3|A0A7D6ZYS3_9CLOTBifunctional4-hydroxy-2-oxoglutaratealdolase/2-dehydro-3-deoxy-phosphogluconatealdolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03650PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.7965393066406	2	504.747847	1007.48114	-0.088646	-4.4744E-05	-2.6727	-0.001349	-2.7613	-0.0013938	504.7459842734655	56.682	0.25257	56.682	56.623	56.875	0					8	5	2	0	0	0	0.027448	1	4730	4730		44.117	0	1	86580			59054	35928	48709	48755	64741	64741					-0.022299487845202748
VEALKEPAVIL	11	Unmodified	_VEALKEPAVIL_					0	0	0			REV__ENSG00000173581|ENST00000586790|CCDC106	REV__ENSG00000173581|ENST00000586790|CCDC106	MULTI-MSMS	OvCa9_classI_Rep4_	4	591.35986328125	2	591.360639	1180.70673	2.5475	0.0015065	-3.5026	-0.0020713	-0.9551	-0.00056481	591.3582010005824	130.25	0.78531	128.77	128.56	129.35	-1.4779					27	15	2	0	0	0	0.68399	1	12509	12509		35.152	1.2304	1	156150	+		59055	21787	48710	48756	64742	64742					0.12360000405510618
VEALPGPVL	9	Unmodified	_VEALPGPVL_					0	0	0			REV__ENST00000416904.4_1_12:53581564-53581708:+|nuORF	REV__ENST00000416904.4_1_12:53581564-53581708:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	448.2872619628906	2	447.768386	893.522219	2.312	0.0010352	0.023173	1.0376E-05	2.3352	0.0010456	447.7683542067989	138.08	0.47092	138.08	137.93	138.4	0					14	9	2	0	0	0	0.027462	1	16141	16141		25.45	1.2474	1	34906	+		59056	25555	48711	48757	64743	64743					0.07119857045631761
VEALRQLL	8	Unmodified	_VEALRQLL_					0	0	0			REV__tr|A0A7D6ZZ96|A0A7D6ZZ96_9CLOTVWAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05450PE=4SV=1	REV__tr|A0A7D6ZZ96|A0A7D6ZZ96_9CLOTVWAdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05450PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.29351806640625	2	471.292559	940.570566	0.20034	9.4418E-05	-0.50937	-0.00024006	-0.30903	-0.00014564	471.29218878217125	82.54	1.368	79.857	79.489	80.857	-2.6829					80	27	4	0	0	0	0.53531	1	6823	6823		73.975	0	1	1141500	+		59057	32401	48712	48758	64744	64744					0.09790350685523208
VEAMRPTVL	9	Unmodified	_VEAMRPTVL_					0	0	0			REV__ENSG00000105851|ENST00000496166|PIK3CG	REV__ENSG00000105851|ENST00000496166|PIK3CG	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.3024597167969	2	508.283877	1014.5532	-0.72412	-0.00036806	-2.7305	-0.0013879	-3.4546	-0.0017559	508.2813866278259	88.567	0.78283	86.436	86.112	86.895	-2.1309					27	15	2	0	0	0	0.027411	1	5436	5436		74.255	8.4519	1	45300	+		59058	17761	48713	48759	64745	64745					0.04650687088201266
VEAMRPTVL	9	Unmodified	_VEAMRPTVL_					0	0	0			REV__ENSG00000105851|ENST00000496166|PIK3CG	REV__ENSG00000105851|ENST00000496166|PIK3CG	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.3032531738281	2	508.283877	1014.5532	-1.0749	-0.00054634	-2.7681	-0.001407	-3.8429	-0.0019533	508.2821888069244	88.944	1.1902	86.341	85.882	87.073	-2.6027					27	23	2	0	0	0	0.027403	1	7658	7658		79.713	8.4169	1	44923	+		59059	17761	48713	48759	64746	64746					0.04650687088201266
VEAPHLPSF	9	Unmodified	_VEAPHLPSF_					0	0	0		ENST00000370096.7_1_1:103574000-103574030:-|nuORF	ENST00000370096.7_1_1:103574000-103574030:-|nuORF	ENST00000370096.7_1_1:103574000-103574030:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.76092529296875	2	498.761092	995.507631	-0.46341	-0.00023113	-0.01646	-8.2095E-06	-0.47987	-0.00023934	498.7609469123516	105	1.6204	102.89	102.55	104.17	-2.1069					71	31	3	0	0	0	0.10363	1	9521	9521		96.19	27.404	1	198460			59060	10918	48714	48760	64747	64747					0.009697848974724366
VEAPHLPSF	9	Unmodified	_VEAPHLPSF_					0	0	0		ENST00000370096.7_1_1:103574000-103574030:-|nuORF	ENST00000370096.7_1_1:103574000-103574030:-|nuORF	ENST00000370096.7_1_1:103574000-103574030:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	498.761092	995.507631	-0.94517	-0.00047142	0.30869	0.00015396	-0.63648	-0.00031745	498.7611677653154	103.7	1.5339	103.12	102.78	104.32	-0.57639	0.1057	0.00045544	NaN	96.19	73	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165750			59061	10918	48714	48760							0.009697848974724366
VEAPHLPSF	9	Unmodified	_VEAPHLPSF_					0	0	0		ENST00000370096.7_1_1:103574000-103574030:-|nuORF	ENST00000370096.7_1_1:103574000-103574030:-|nuORF	ENST00000370096.7_1_1:103574000-103574030:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	498.761092	995.507631	0.12421	6.195E-05	-0.62047	-0.00030947	-0.49626	-0.00024752	498.7606890753454	104.46	1.56	103.03	102.6	104.16	-1.4347	0.015375	-0.00047142	NaN	96.19	53	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	214620			59062	10918	48714	48760							0.009697848974724366
VEAPMPKL	8	Unmodified	_VEAPMPKL_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1;ENST00000423240.1_1_9:74622799-74623024:-|nuORF	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	442.7498474121094	2	442.749139	883.483725	1.1182	0.0004951	-1.222	-0.00054102	-0.10371	-4.5918E-05	442.74846347833846	86.196	1.5371	83.55	83.142	84.679	-2.6463					71	30	4	0	0	0	0.50747	1	7286	7286		76.774	7.9873	1	400360			59063	2535	48715	48761	64748	64748					0.037322281394494894
VEAPMPKL	8	Unmodified	_VEAPMPKL_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1;ENST00000423240.1_1_9:74622799-74623024:-|nuORF	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	442.749139	883.483725	-0.061744	-2.7337E-05	0.098286	4.3516E-05	0.036542	1.6179E-05	442.74904714816273	85.065	1.903	83.519	83.104	85.007	-1.5462	-0.046656	0.00014152	NaN	76.774	85	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	247590			59064	2535	48715	48761							0.037322281394494894
VEAPMPKL	8	Unmodified	_VEAPMPKL_					0	0	0		ENSG00000106211|ENST00000248553|HSPB1;ENST00000423240.1_1_9:74622799-74623024:-|nuORF	ENSG00000106211|ENST00000248553|HSPB1	ENSG00000106211|ENST00000248553|HSPB1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	442.749139	883.483725	-0.80307	-0.00035556	0.71559	0.00031683	-0.087479	-3.8731E-05	442.7493294592902	85.849	1.9092	83.628	83.134	85.043	-2.2204	0.062765	0.00068814	NaN	76.774	74	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	427950			59065	2535	48715	48761							0.037322281394494894
VEAPPPSSPSV	11	Unmodified	_VEAPPPSSPSV_					0	0	0		nc|ENSG00000144677|O15194-2|CTDSPL;ENSG00000144677|ENST00000273179|CTDSPL	nc|ENSG00000144677|O15194-2|CTDSPL	nc|ENSG00000144677|O15194-2|CTDSPL	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.276611328125	2	533.774396	1065.53424	1.7366	0.00092693	4.481	0.0023918	6.2176	0.0033188	533.776468021615	78.744	0.89511	78.744	78.457	79.352	0					34	21	3	0	0	0	0.025521	1	8003	8003		64.207	2.0999	1	1400600			59066	5174	48716	48762	64749	64749					0.004094289981367183
VEAPPPSSPSV	11	Unmodified	_VEAPPPSSPSV_					0	0	0		nc|ENSG00000144677|O15194-2|CTDSPL;ENSG00000144677|ENST00000273179|CTDSPL	nc|ENSG00000144677|O15194-2|CTDSPL	nc|ENSG00000144677|O15194-2|CTDSPL	MULTI-MATCH	OvCa9_classI_Rep2	2		2	533.774396	1065.53424	-0.61959	-0.00033072	-0.25005	-0.00013347	-0.86965	-0.0004642	533.773881279416	80.452	0.99734	78.757	78.271	79.269	-1.6951	0.1852	-0.00094574	NaN	64.207	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25125			59067	5174	48716	48762							0.004094289981367183
VEAPPPSSPSV	11	Unmodified	_VEAPPPSSPSV_					0	0	0		nc|ENSG00000144677|O15194-2|CTDSPL;ENSG00000144677|ENST00000273179|CTDSPL	nc|ENSG00000144677|O15194-2|CTDSPL	nc|ENSG00000144677|O15194-2|CTDSPL	MULTI-MATCH	OvCa9_classI_Rep3	3		2	533.774396	1065.53424	0.47023	0.00025099	-1.2876	-0.0006873	-0.81739	-0.0004363	533.7738291480096	80.752	0.82471	78.43	78.182	79.007	-2.3226	-0.14191	-0.0020534	NaN	64.207	33	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63543			59068	5174	48716	48762							0.004094289981367183
VEAPPPSSPSV	11	Unmodified	_VEAPPPSSPSV_					0	0	0		nc|ENSG00000144677|O15194-2|CTDSPL;ENSG00000144677|ENST00000273179|CTDSPL	nc|ENSG00000144677|O15194-2|CTDSPL	nc|ENSG00000144677|O15194-2|CTDSPL	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	533.774396	1065.53424	-1.7294	-0.00092313	1.2018	0.0006415	-0.52762	-0.00028163	533.7748787528327	81.066	0.68748	78.355	78.052	78.739	-2.7106	-0.21625	0.00060422	NaN	64.207	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59469			59069	5174	48716	48762							0.004094289981367183
VEAPPSVVL	9	Unmodified	_VEAPPSVVL_					0	0	0		nc|ENSG00000133121|Q9Y3M8-3|STARD13;nc|ENSG00000133121|Q9Y3M8-4|STARD13;nc|ENSG00000133121|Q9Y3M8-2|STARD13;ENSG00000133121|ENST00000336934|STARD13	nc|ENSG00000133121|Q9Y3M8-3|STARD13	nc|ENSG00000133121|Q9Y3M8-3|STARD13	MULTI-MSMS	OvCa99_classI_Rep5	1	455.7663269042969	2	455.765843	909.517133	1.383	0.00063033	1.3221	0.00060255	2.7051	0.0012329	455.76623088204866	109.65	0.89371	109.65	109.24	110.13	0					48	19	3	0	0	0	0.079296	1	12427	12427		102.77	5.3007	1	708830			59070	4206	48717	48763	64750	64750					0.05875553183000193
VEARVQPN	8	Unmodified	_VEARVQPN_					0	0	0		ENST00000452385.5_1_3:48982572-49020700:+|nuORF;ENSG00000177479|ENST00000356401|ARIH2;ENST00000584680.1_1_18:26231883-26232303:+|nuORF;ENST00000459976.2_1_3:49002373-49005591:+|nuORF	ENST00000452385.5_1_3:48982572-49020700:+|nuORF	ENST00000452385.5_1_3:48982572-49020700:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	456.74359130859375	2	456.748516	911.482479	-6.3306	-0.0028915	0.70985	0.00032422	-5.6207	-0.0025673	456.7479075440041	163.68	0.72723	162.05	161.7	162.43	-1.6336					28	20	2	0	0	0	0.73626	1	16166	16166		33.516	3.0119	1	22117			59071	7687	48718	48764	64751	64751					0.02319730094905026
VEASGGITLD	10	Unmodified	_VEASGGITLD_					0	0	0		ENST00000564967.1_1_16:29708453-29708729:+|nuORF;ENST00000219771.7_1_16:29690360-29708729:+|nuORF;ENSG00000103485|ENST00000395384|QPRT	ENST00000564967.1_1_16:29708453-29708729:+|nuORF	ENST00000564967.1_1_16:29708453-29708729:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2557373046875	2	481.245472	960.476391	-0.46285	-0.00022274	0.17536	8.4393E-05	-0.28749	-0.00013835	481.24616813298366	61.439	0.54772	61.439	61.156	61.704	0					22	12	3	0	0	0	0.026679	1	5395	5395		44.377	0	1	363110			59072	2319	48719	48765	64752	64752					-0.0054283292729451205
VEASIKGVN	9	Unmodified	_VEASIKGVN_					0	0	0			REV__ENSG00000130477|ENST00000519716|UNC13A	REV__ENSG00000130477|ENST00000519716|UNC13A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.7766418457031	2	458.758549	915.502546	-1.1913	-0.00054652	2.9244	0.0013416	1.7331	0.00079506	458.7596335852221	45.105	0.72774	42.066	41.867	42.595	-3.0385					16	13	2	0	0	0	0.027462	1	2333	2333		29.15	3.6994	1	22395	+		59073	18947	48720	48766	64753	64753					0.04141481034866956
VEATVKLDEL	10	Unmodified	_VEATVKLDEL_					0	0	0		ENST00000426925.5_1_3:15314864-15374612:-|nuORF;SH3BP5|p.I205Tfs*9|1|0.04|ENSG00000131370|chr3:15262171-15262172|-/G|frameshift_variant;ENSG00000131370|ENST00000383791|SH3BP5	ENST00000426925.5_1_3:15314864-15374612:-|nuORF	ENST00000426925.5_1_3:15314864-15374612:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	558.8120727539062	2	558.810979	1115.6074	2.7514	0.0015375	-2.3261	-0.0012999	0.42532	0.00023767	558.8104434034885	93.904	0.88464	93.904	93.59	94.475	0					47	19	4	0	0	0	0.073842	1	10206	10206		120.31	21.677	1	1775700			59074	4056	48721	48767	64754	64754					0.05422557720748955
VEAVGIRKI	9	Unmodified	_VEAVGIRKI_					0	0	0			REV__tr|A0A553SG35|A0A553SG35_NIACISporulationproteinSpoIISAOS=NialliacirculansOX=1397GN=CEQ21_10025PE=4SV=1	REV__tr|A0A553SG35|A0A553SG35_NIACISporulationproteinSpoIISAOS=NialliacirculansOX=1397GN=CEQ21_10025PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.7962646484375	2	492.813659	983.612765	0.28193	0.00013894	-0.88911	-0.00043817	-0.60717	-0.00029922	492.8127480865593	76.007	0.52923	73.068	72.741	73.27	-2.9389					14	10	2	0	0	0	0.027441	1	5992	5992		49.442	0	1	24413	+		59075	29655	48722	48768	64755	64755					0.12030326093884014
VEAVRDQP	8	Unmodified	_VEAVRDQP_					0	0	0			REV__nc|ENSG00000124159|O95460-4|MATN4	REV__nc|ENSG00000124159|O95460-4|MATN4	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.75177001953125	2	457.240524	912.466495	0.2338	0.0001069	-0.33387	-0.00015266	-0.10007	-4.5756E-05	457.240178072136	64.975	0.47983	64.975	64.631	65.111	0					15	11	2	0	0	0	0.028476	1	5886	5886		38.806	1.647	1	482630	+		59076	18668	48723	48769	64756	64756					0.0067602385800000775
VEAYEYLN	8	Unmodified	_VEAYEYLN_					0	0	0		nc|ENSG00000013374|Q9Y5A7-2|NUB1;PRKAG2-NUB1|3|fusion;ENSG00000013374|ENST00000568733|NUB1;PRKAG2-NUB1|4|fusion;PRKAG2-NUB1|5|fusion;PRKAG2-NUB1|6|fusion;PRKAG2-NUB1|1|fusion;PRKAG2-NUB1|2|fusion	nc|ENSG00000013374|Q9Y5A7-2|NUB1	nc|ENSG00000013374|Q9Y5A7-2|NUB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.73095703125	2	500.73474	999.454927	-0.19642	-9.8356E-05	-4.1619	-0.002084	-4.3583	-0.0021823	500.73182037322005	122.32	1.0502	120.95	120.65	121.7	-1.3666					48	20	3	0	0	0	0.73205	1	11542	11542		35.618	1.4457	1	68046			59077	984	48724	48770	64757	64757					-0.04482217956012846
VECARLEP	8	Carbamidomethyl (C)	_VEC(Carbamidomethyl (C))ARLEP_	VEC(1)ARLEP		VEC(100)ARLEP		0	1	0			REV__ENST00000425455.2_1_1:121244673-121244892:+|nuORF	REV__ENST00000425455.2_1_1:121244673-121244892:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.78082275390625	2	487.242209	972.469866	0.3882	0.00018915	0.74669	0.00036382	1.1349	0.00055297	487.2425180700265	74.155	0.53316	74.155	73.945	74.478	0					19	13	2	0	0	0	0.028476	1	7328	7328		104.75	46.935	1	590020	+		59078	25654	48725	48771	64758	64758	316				-0.017470493596420056
VECNLIANG	9	Unmodified	_VECNLIANG_					0	0	0			REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	REV__nc|ENSG00000143341|Q96RW7-2|HMCN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.76214599609375	2	466.728935	931.443317	1.0615	0.00049545	1.784	0.00083266	2.8456	0.0013281	466.72966712052175	142.56	0.19873	142.56	142.44	142.64	0					5	3	2	0	0	0	0.027462	1	16661	16661		14.865	0	1	13746	+		59079	19832	48726	48772	64759	64759					-0.025147382509885574
VECQLKTTL	9	Unmodified	_VECQLKTTL_					0	0	0		PIGS-SPAG5|1|fusion;ENSG00000076382|ENST00000321765|SPAG5;ENSG00000258472|ENST00000531839|unknown	PIGS-SPAG5|1|fusion	PIGS-SPAG5|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.2824096679688	2	517.781167	1033.54778	0.86489	0.00044782	-1.5738	-0.00081486	-0.70887	-0.00036704	518.281671868075	67.751	1.9638	64.261	63.888	65.852	-3.4902					131	39	4	0	0	0	0.2784	1	4988	4988		65.465	14.13	1	4272300			59080	15499	48727	48773	64760	64760					0.03234963505747146
VEDAQDVSL	9	Unmodified	_VEDAQDVSL_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	488.23577880859375	2	488.235104	974.455655	1.3398	0.00065415	0.43119	0.00021052	1.771	0.00086467	488.2352365968101	83.057	1.6933	83.057	82.694	84.388	0					84	39	4	0	0	0	0.011767	1	8632	8632		163.15	32.12	1	7943400			59081	6293	48728	48774	64761	64761					-0.03259423306951703
VEDDPKVTL	9	Unmodified	_VEDDPKVTL_					0	0	0		ENSG00000121068|ENST00000240328|TBX2;ENST00000477081.1_1_17:59477759-59482423:+|nuORF	ENSG00000121068|ENST00000240328|TBX2	ENSG00000121068|ENST00000240328|TBX2	MULTI-MSMS	OvCa99_classI_Rep5	1	508.27008056640625	2	508.268947	1014.52334	0.29202	0.00014842	-0.5839	-0.00029678	-0.29189	-0.00014836	508.26855951113436	72.743	0.82538	72.743	72.45	73.276	0					45	20	3	0	0	0	0.051592	1	7094	7094		117.81	24.616	1	5421100			59082	3469	48729	48775	64762	64762					0.01666026623865946
VEDDSRLLL	9	Unmodified	_VEDDSRLLL_					0	0	0		nc|ENSG00000173575|O14647-2|CHD2;ENSG00000173575|ENST00000394196|CHD2	nc|ENSG00000173575|O14647-2|CHD2	nc|ENSG00000173575|O14647-2|CHD2	MULTI-MSMS	OvCa99_classI_Rep5	1	530.2885131835938	2	530.287671	1058.56079	1.5314	0.0008121	0.076131	4.0371E-05	1.6076	0.00085247	530.2875073132171	92.28	0.5018	92.28	92.092	92.594	0					29	11	4	0	0	0	0.1149	1	9972	9972		93.143	10.903	1	2751500			59083	7391	48730	48776	64763	64763					0.03385117889479261
VEDDSRLLL	9	Unmodified	_VEDDSRLLL_					0	0	0		nc|ENSG00000173575|O14647-2|CHD2;ENSG00000173575|ENST00000394196|CHD2	nc|ENSG00000173575|O14647-2|CHD2	nc|ENSG00000173575|O14647-2|CHD2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.287671	1058.56079	-0.73747	-0.00039107	0.067625	3.5861E-05	-0.66985	-0.00035521	530.2877071717318	93.47	0.36441	92.302	92.054	92.418	-1.168	0.0058492	-0.00035022	NaN	93.143	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34609			59084	7391	48730	48776							0.03385117889479261
VEDDSRLLL	9	Unmodified	_VEDDSRLLL_					0	0	0		nc|ENSG00000173575|O14647-2|CHD2;ENSG00000173575|ENST00000394196|CHD2	nc|ENSG00000173575|O14647-2|CHD2	nc|ENSG00000173575|O14647-2|CHD2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	530.287671	1058.56079	-0.8366	-0.00044364	1.8423	0.00097694	1.0057	0.00053331	530.2887011741005	94.176	0.40836	92.281	92.001	92.409	-1.8956	-0.015653	0.0015319	NaN	93.143	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49593			59085	7391	48730	48776							0.03385117889479261
VEDDSRLLL	9	Unmodified	_VEDDSRLLL_					0	0	0		nc|ENSG00000173575|O14647-2|CHD2;ENSG00000173575|ENST00000394196|CHD2	nc|ENSG00000173575|O14647-2|CHD2	nc|ENSG00000173575|O14647-2|CHD2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	530.287671	1058.56079	-1.2208	-0.00064739	1.681	0.00089141	0.46018	0.00024403	530.2886797353206	94.791	0.35062	92.322	92.11	92.46	-2.4685	0.025958	0.0013609	NaN	93.143	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37936			59086	7391	48730	48776							0.03385117889479261
VEDEEGVSLI	10	Unmodified	_VEDEEGVSLI_					0	0	0			REV__ENST00000531473.5_1_8:144695082-144696778:-|nuORF	REV__ENST00000531473.5_1_8:144695082-144696778:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.7835693359375	2	545.269144	1088.52373	0.33143	0.00018072	1.255	0.0006843	1.5864	0.00086502	545.2697473009948	63.188	0.36044	63.188	63.016	63.376	0					15	8	2	0	0	0	0.026994	1	5650	5650		40.778	6.6056	1	746880	+		59087	17668	48731	48777	64764	64764					-0.016985984469329196
VEDIHGLFSL	10	Unmodified	_VEDIHGLFSL_					0	0	0		ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	MULTI-MSMS	OvCa99_classI_Rep5	1	565.3002319335938	2	565.298039	1128.58152	2.0722	0.0011714	-0.17307	-9.7838E-05	1.8992	0.0010736	565.2979398954998	125.71	0.69392	125.71	125.49	126.18	0					26	14	2	0	0	0	0.22663	1	14530	14530		90.37	13.596	1	594050			59088	2604	48732	48778	64765	64765					0.02237708269126415
VEDLARISL	9	Unmodified	_VEDLARISL_					0	0	0		ENSG00000088205|ENST00000263239|DDX18;ENST00000476149.1_1_2:118582113-118584081:+|nuORF	ENSG00000088205|ENST00000263239|DDX18	ENSG00000088205|ENST00000263239|DDX18	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.2932434082031	2	508.292756	1014.57096	-0.42178	-0.00021439	0.45827	0.00023294	0.036493	1.8549E-05	508.2928156701234	102.69	1.2545	100.5	100.2	101.46	-2.1994					50	23	3	0	0	0	0.38807	1	9256	9256		53.089	6.6322	1	192160			59089	1783	48733	48779	64766	64766					0.06425725614712974
VEDLGPTLAPL	11	Unmodified	_VEDLGPTLAPL_					0	0	0			REV__chr10:100781341-100806430|116|11.18|0.34|5.05|+|ENST00000554172|PAX2,PAX2	REV__chr10:100781341-100806430|116|11.18|0.34|5.05|+|ENST00000554172|PAX2,PAX2	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.8167724609375	2	562.813522	1123.61249	1.6842	0.0009479	-1.5573	-0.00087646	0.12694	7.1442E-05	562.8125678819742	142	1.2569	140.53	140.18	141.44	-1.4627					71	23	4	0	0	0	0.52842	1	13883	13883		51.193	3.2332	1	309470	+		59090	15838	48734	48780	64767	64767					0.05562861583371159
VEDLGSKILL	10	Unmodified	_VEDLGSKILL_					0	0	0		chr19:579656-581444|428|26.64|0.0|21.35|+|ENST00000618112|BSG,None;nc|ENSG00000172270|P35613-2|BSG;ENSG00000172270|ENST00000333511|BSG;ENST00000576925.3_1_19:572634-579657:+|nuORF	chr19:579656-581444|428|26.64|0.0|21.35|+|ENST00000618112|BSG,None	chr19:579656-581444|428|26.64|0.0|21.35|+|ENST00000618112|BSG,None	MULTI-MSMS	OvCa99_classI_Rep5	1	543.82568359375	2	543.823889	1085.63323	1.5955	0.00086766	1.1097	0.00060348	2.7052	0.0014711	543.8240471327339	105.9	0.96697	105.9	105.66	106.63	0					48	21	5	0	0	0	0.0061832	2	11897	11897;11921		164.46	45.712	1	3870500			59091	425	48735	48781	64768;64769	64768					0.09383451963049083
VEDNLENQ	8	Unmodified	_VEDNLENQ_					0	0	0			REV__NOD1|p.Q907Rfs*20|1|0.04|ENSG00000106100|chr7:30429444-30429444|G/-|frameshift_variant	REV__NOD1|p.Q907Rfs*20|1|0.04|ENSG00000106100|chr7:30429444-30429444|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.29205322265625	2	480.717079	959.419604	0.57168	0.00027482	-1.5658	-0.00075269	-0.99409	-0.00047788	480.7163388023801	111.15	0.84216	109.55	109.23	110.07	-1.6011					24	15	2	0	0	0	0.028476	1	10224	10224		23.042	0	1	20818	+		59092	17778	48736	48782	64770	64770					-0.06172880483802601
VEDPETGLRL	10	Unmodified	_VEDPETGLRL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MSMS	OvCa99_classI_Rep5	1	564.800048828125	2	564.798403	1127.58225	NaN	NaN	NaN	NaN	NaN	NaN	NaN	88.442	1	88.442	87.942	88.942	0								0	0	0	0.097594	1	9404	9404		70.816	8.7088	1				59093	7740	48737	48783	64771	64771					0.023565029181781938
VEDPTFLNQL	10	Unmodified	_VEDPTFLNQL_					0	0	0		DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.F3496Wfs*92|1|0.14|ENSG00000197102|chr14:102034043-102034044|-/GACCTGGCAGCTGTCGAGGC|frameshift_variant;DYNC1H1|p.P2596Tfs*19|1|0.06|ENSG00000197102|chr14:102016936-102016937|-/A|frameshift_variant;DYNC1H1|p.E1316*|1|0.12|ENSG00000197102|chr14:102000128-102000129|-/C|frameshift_variant;DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	588.3021240234375	2	588.300778	1174.587	1.204	0.0007083	0.92291	0.00054295	2.1269	0.0012512	588.3012680331245	131.05	1.0407	131.05	130.68	131.72	0					59	21	5	0	0	0	0.020903	2	15202	15202;15227		146.79	50.92	1	1527700			59094	767;768	48738	48784	64772;64773	64772					0.006693870609524311
VEDSALLMQTL	11	Unmodified	_VEDSALLMQTL_					0	0	0		nc|ENSG00000179222|Q9Y5V3-2|MAGED1;ENSG00000179222|ENST00000326587|MAGED1;ENST00000485420.5_1_X:51636757-51640983:+|nuORF;ENST00000494718.5_1_X:51637400-51640272:+|nuORF	nc|ENSG00000179222|Q9Y5V3-2|MAGED1	nc|ENSG00000179222|Q9Y5V3-2|MAGED1	MULTI-MSMS	OvCa99_classI_Rep5	1	610.3214111328125	2	610.315571	1218.61659	2.1988	0.001342	0.09956	6.0763E-05	2.2984	0.0014027	610.315425715288	133.97	0.85027	133.97	133.44	134.29	0					34	17	3	0	0	0	0.34475	2	15581	15581;15605		65.157	10.435	1	580860			59095	7811	48739	48785	64774;64775	64774					0.016025830148009845
VEDSNNHHL	9	Unmodified	_VEDSNNHHL_					0	0	0		ENSG00000214717|ENST00000652001|ZBED1	ENSG00000214717|ENST00000652001|ZBED1	ENSG00000214717|ENST00000652001|ZBED1	MULTI-MSMS	OvCa99_classI_Rep5	1	532.7413330078125	2	532.741419	1063.46829	-0.42333	-0.00022553	-0.012046	-6.4175E-06	-0.43538	-0.00023194	532.7413105555255	29.362	0.49948	29.362	29.186	29.686	0					27	9	4	0	0	0	0.10363	1	1039	1039		96.19	19.416	1	591860			59096	9180	48740	48786	64776	64776					-0.06090967124055169
VEEAKLLK	8	Unmodified	_VEEAKLLK_					0	0	0			REV__ENSG00000111145|ENST00000228741|ELK3	REV__ENSG00000111145|ENST00000228741|ELK3	MULTI-MSMS	OvCa9_classI_Rep3	3	465.2858581542969	2	465.286943	928.559333	1.3406	0.00062376	-2.0993	-0.00097679	-0.75874	-0.00035303	465.28596646402366	125.96	2.9835	124.9	124.53	127.51	-1.0519					156	57	5	0	0	0	0.57734	1	9926	9926		68.787	0	1	4345900	+		59097	18019	48741	48787	64777	64777					0.09219528591381732
VEEAVATRTAL	11	Unmodified	_VEEAVATRTAL_					0	0	0		ENSG00000100813|ENST00000605057|ACIN1;nc|ENSG00000100813|Q9UKV3-5|ACIN1;nc|ENSG00000100813|Q9UKV3|ACIN1;nc|ENSG00000100813|Q9UKV3-3|ACIN1;nc|ENSG00000100813|Q9UKV3-2|ACIN1	ENSG00000100813|ENST00000605057|ACIN1	ENSG00000100813|ENST00000605057|ACIN1	MULTI-MSMS	OvCa99_classI_Rep5	1	580.3221435546875	2	580.319502	1158.62445	-0.3749	-0.00021756	0.60813	0.00035291	0.23323	0.00013535	580.3196308024442	67.466	0.70644	67.466	67.173	67.88	0					49	17	5	0	0	0	0.043701	1	6306	6306		120.27	21.691	1	5097100			59098	2107	48742	48788	64778	64778					0.05148478326600525
VEEEQRQL	8	Unmodified	_VEEEQRQL_					0	0	0		ENSG00000132109|ENST00000254436|TRIM21	ENSG00000132109|ENST00000254436|TRIM21	ENSG00000132109|ENST00000254436|TRIM21	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.281005859375	2	515.76182	1029.50909	-0.070328	-3.6273E-05	-0.12334	-6.3616E-05	-0.19367	-9.9888E-05	515.7615777815035	62.912	0.43748	62.912	62.621	63.058	0					18	10	2	0	0	0	0.028476	1	5616	5616		54.776	16.023	1	434310			59099	4109	48743	48789	64779	64779					-0.004486258044153146
VEEFRKIAI	9	Unmodified	_VEEFRKIAI_					0	0	0			REV__tr|A0A553SL73|A0A553SL73_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20105PE=4SV=1	REV__tr|A0A553SL73|A0A553SL73_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20105PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.2796020507812	2	552.824224	1103.63389	1.3773	0.00076138	-1.3582	-0.00075083	0.019077	1.0546E-05	552.8229805415951	113.12	1.235	113	112.67	113.91	-0.12174					41	24	3	0	0	0	0.027462	1	10794	10794		42.396	8.2236	1	75430	+		59100	30195	48744	48790	64780	64780					0.08622291402753035
VEEFRTTK	8	Unmodified	_VEEFRTTK_					0	0	0			REV__ENSG00000196208|ENST00000381486|GREB1	REV__ENSG00000196208|ENST00000381486|GREB1	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.2597961425781	2	505.269281	1008.52401	-0.62688	-0.00031674	1.4396	0.00072741	0.81277	0.00041067	505.2691958559303	80.741	0.309	78.418	78.234	78.543	-2.3226					6	5	2	0	0	0	0.028476	1	4423	4423		21.96	0	1	7164	+		59101	22799	48745	48791	64781	64781					0.020088660635678934
VEEGVKHHL	9	Unmodified	_VEEGVKHHL_					0	0	0		ENST00000486701.1_1_2:27663393-27664286:+|nuORF;ENST00000460499.5_1_2:27659579-27664676:+|nuORF;ENSG00000115216|ENST00000379852|NRBP1	ENST00000486701.1_1_2:27663393-27664286:+|nuORF	ENST00000486701.1_1_2:27663393-27664286:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	524.2833251953125	2	524.282723	1046.55089	-0.28547	-0.00014967	-0.27759	-0.00014553	-0.56306	-0.0002952	524.282576384049	32.031	0.54576	32.031	31.807	32.353	0					26	10	3	0	0	0	0.27001	1	1361	1361		66.429	3.123	1	928850			59102	3070	48746	48792	64782	64782					0.02947974674748366
VEEKLKAEI	9	Unmodified	_VEEKLKAEI_					0	0	0		nc|ENSG00000029725|Q15276-2|RABEP1;ENSG00000029725|ENST00000537505|RABEP1;ENST00000575475.2_1_17:5185712-5281605:+|nuORF	nc|ENSG00000029725|Q15276-2|RABEP1	nc|ENSG00000029725|Q15276-2|RABEP1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.8093872070312	2	529.808239	1057.60193	-0.58449	-0.00030967	-1.5012	-0.00079536	-2.0857	-0.001105	529.807658457611	104.6	3.6666	104.6	104.15	107.82	0					240	84	6	0	0	0	0.10502	1	11868	11868		95.815	0	1	177490000			59103	1063	48747	48793	64783	64783					0.0754287892893899
VEEKTKESL	9	Unmodified	_VEEKTKESL_					0	0	0		nc|ENSG00000117385|Q32P28-4|P3H1;ENSG00000117385|ENST00000296388|P3H1;nc|ENSG00000117385|Q32P28-3|P3H1;ENST00000460031.5_1_1:43212370-43220777:-|nuORF	nc|ENSG00000117385|Q32P28-4|P3H1	nc|ENSG00000117385|Q32P28-4|P3H1	MULTI-MSMS	OvCa99_classI_Rep5	1	531.7872314453125	2	531.787504	1061.56045	-0.30129	-0.00016022	0.022364	1.1893E-05	-0.27893	-0.00014833	531.7874224006141	33.46	1.1205	33.46	33.136	34.257	0					50	22	5	0	0	0	0.036986	1	1530	1530		129.42	22.414	1	996700			59104	3251	48748	48794	64784	64784					0.03213698169633972
VEEKTKESL	9	Unmodified	_VEEKTKESL_					0	0	0		nc|ENSG00000117385|Q32P28-4|P3H1;ENSG00000117385|ENST00000296388|P3H1;nc|ENSG00000117385|Q32P28-3|P3H1;ENST00000460031.5_1_1:43212370-43220777:-|nuORF	nc|ENSG00000117385|Q32P28-4|P3H1	nc|ENSG00000117385|Q32P28-4|P3H1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	531.787504	1061.56045	-3.3179	-0.0017644	4.5184	0.0024028	1.2005	0.00063841	531.789615113018	35.936	0.34792	33.226	33.052	33.4	-2.7097	-0.15763	0.0034429	NaN	129.42	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17651			59105	3251	48748	48794							0.03213698169633972
VEEKTKESL	9	Unmodified	_VEEKTKESL_					0	0	0		nc|ENSG00000117385|Q32P28-4|P3H1;ENSG00000117385|ENST00000296388|P3H1;nc|ENSG00000117385|Q32P28-3|P3H1;ENST00000460031.5_1_1:43212370-43220777:-|nuORF	nc|ENSG00000117385|Q32P28-4|P3H1	nc|ENSG00000117385|Q32P28-4|P3H1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	531.787504	1061.56045	-0.019661	-1.0455E-05	2.4783	0.0013179	2.4586	0.0013075	531.7890908502956	36.313	0.49965	33.465	33.288	33.788	-2.849	0.081031	0.0012731	NaN	129.42	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34004			59106	3251	48748	48794							0.03213698169633972
VEEKTNWKS	9	Unmodified	_VEEKTNWKS_					0	0	0			REV__tr|A0A553SRR8|A0A553SRR8_NIACIDUF4304domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01605PE=4SV=1	REV__tr|A0A553SRR8|A0A553SRR8_NIACIDUF4304domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_01605PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	560.8043823242188	2	560.785296	1119.55604	-1.0376	-0.00058187	1.7805	0.00099848	0.7429	0.00041661	560.7859490392188	96.943	0.92547	95.114	94.775	95.701	-1.8286					27	17	2	0	0	0	0.027459	1	6462	6462		62.107	12.666	1	37574	+		59107	30758	48749	48795	64785	64785					0.0010423374671972852
VEELVAKVRKT	11	Unmodified	_VEELVAKVRKT_					0	0	0			REV__tr|A0A7D6ZIR4|A0A7D6ZIR4_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_05685PE=4SV=1	REV__tr|A0A7D6ZIR4|A0A7D6ZIR4_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_05685PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	423.94061279296875	3	424.594238	1270.76089	-0.70065	-0.00029749	0.31397	0.00013331	-0.38669	-0.00016419	424.5942255984499	80.591	0.68353	77.88	77.516	78.199	-2.7106					17	13	2	0	0	0	0.025943	1	6550	6550		18.332	0	1	19707	+		59108	32066	48750	48796	64786	64786					0.13633592557062002
VEENRGPVL	9	Unmodified	_VEENRGPVL_					0	0	0		ENST00000472348.1_1_7:100204024-100205723:+|nuORF;ENSG00000106333|ENST00000223061|PCOLCE	ENST00000472348.1_1_7:100204024-100205723:+|nuORF	ENST00000472348.1_1_7:100204024-100205723:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	506.7765197753906	2	506.774731	1011.53491	0.18467	9.3584E-05	-0.75968	-0.00038499	-0.57501	-0.0002914	506.774529439607	58.188	0.99335	58.188	57.899	58.892	0					29	23	2	0	0	0	0.35694	1	4933	4933		56.434	0.92959	1	1652500			59109	2542	48751	48797	64787	64787					0.029602684378687627
VEEPSINLE	9	Unmodified	_VEEPSINLE_					0	0	0		chr1:632552-632616|234|15.1|0.0|20.53|+|1|None,MTCO1P12|1	chr1:632552-632616|234|15.1|0.0|20.53|+|1|None,MTCO1P12|1	chr1:632552-632616|234|15.1|0.0|20.53|+|1|None,MTCO1P12|1	MULTI-SECPEP	OvCa9_classI_Rep3	3	514.3115844726562	2	515.258579	1028.50261	0.87995	0.0004534	-3.8453	-0.0019813	-2.9654	-0.0015279	515.7556679553501	105.09	0.36574	103.74	103.52	103.89	-1.3482					8	6	2	0	0	0	0.027232	1	7343	7343		76.774	12.567	1	7148.7			59110	265	48752	48798	64788	64788					-0.010505637558026137
VEERQGRFA	9	Unmodified	_VEERQGRFA_					0	0	0			REV__nc|ENSG00000133265|Q9NZL4-3|HSPBP1	REV__nc|ENSG00000133265|Q9NZL4-3|HSPBP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	546.33154296875	2	546.283254	1090.55196	-2.5018	-0.0013667	0.89452	0.00048866	-1.6073	-0.00087803	546.7843928593319	37.096	0.19738	34.386	34.287	34.485	-2.7097					5	3	2	0	0	0	0.027462	1	1638	1638		34.173	3.6689	1	5966.6	+		59111	19138	48753	48799	64789	64789					0.010301890436721806
VEESGEHVIL	10	Unmodified	_VEESGEHVIL_					0	0	0		nc|ENSG00000108883|Q15029-2|EFTUD2;nc|ENSG00000108883|Q15029-3|EFTUD2;ENSG00000108883|ENST00000426333|EFTUD2;ENST00000590367.5_1_17:42931463-42950195:-|nuORF;ENST00000590977.5_1_17:42931463-42936567:-|nuORF;ENST00000586276.5_1_17:42931463-42937758:-|nuORF	nc|ENSG00000108883|Q15029-2|EFTUD2	nc|ENSG00000108883|Q15029-2|EFTUD2	MULTI-MSMS	OvCa99_classI_Rep5	1	556.2858276367188	2	556.285128	1110.5557	0.51795	0.00028813	0.022624	1.2586E-05	0.54057	0.00030071	556.2850269164804	73.81	0.9176	73.81	73.56	74.478	0					68	23	4	0	0	0	0.20801	1	7278	7278		93.195	25.702	1	10937000			59112	2685	48754	48800	64790	64790					0.0048481402686775255
VEESKKII	8	Unmodified	_VEESKKII_					0	0	0		tr|A0A553SLX2|A0A553SLX2_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_21490PE=4SV=1	tr|A0A553SLX2|A0A553SLX2_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_21490PE=4SV=1	tr|A0A553SLX2|A0A553SLX2_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_21490PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.30096435546875	2	473.2844	944.554247	2.7575	0.0013051	0.56971	0.00026964	3.3272	0.0015747	473.2845810927753	86.405	0.68846	86.405	86.073	86.761	0					35	16	3	0	0	0	0.028476	1	9145	9145		60.972	26.799	1	2994000			59113	33772	48755	48801	64791	64791					0.079752247287729
VEESKKII	8	Unmodified	_VEESKKII_					0	0	0		tr|A0A553SLX2|A0A553SLX2_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_21490PE=4SV=1	tr|A0A553SLX2|A0A553SLX2_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_21490PE=4SV=1	tr|A0A553SLX2|A0A553SLX2_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_21490PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	473.2844	944.554247	0.28261	0.00013375	-0.96773	-0.00045801	-0.68512	-0.00032426	473.28380137598265	88.516	1.6364	86.385	86.009	87.645	-2.1309	-0.08041	-0.00019992	NaN	60.972	90	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	663130			59114	33772	48755	48801							0.079752247287729
VEFDEVDSL	9	Unmodified	_VEFDEVDSL_					0	0	0		nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H;ENST00000479338.5_1_7:73588713-73604094:+|nuORF;ENST00000489484.5_1_7:73588713-73604262:+|nuORF	nc|ENSG00000106682|Q15056-2|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	MULTI-MSMS	OvCa9_classI_Rep3	3	526.7423095703125	2	526.742762	1051.47097	-0.55517	-0.00029243	0.59701	0.00031447	0.041839	2.2038E-05	526.7428720492791	118.59	1.6845	117.56	117.29	118.97	-1.0271					63	33	3	0	0	0	0.18193	2	8959	8959;8972		79.451	23.947	1	107930			59115	2570	48756	48802	64792;64793	64792					-0.052705565097539875
VEFDEVDSL	9	Unmodified	_VEFDEVDSL_					0	0	0		nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H;ENST00000479338.5_1_7:73588713-73604094:+|nuORF;ENST00000489484.5_1_7:73588713-73604262:+|nuORF	nc|ENSG00000106682|Q15056-2|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.7425537109375	2	526.742762	1051.47097	-2.0479	-0.0010787	2.3311	0.0012279	0.2832	0.00014918	526.7436709093864	118.89	1.5117	117.54	117.21	118.72	-1.3444					69	28	4	0	0	0	0.56889	1	11164	11164		35.618	5.1146	1	176740			59116	2570	48756	48802	64794	64794					-0.052705565097539875
VEFDEVDSL	9	Unmodified	_VEFDEVDSL_					0	0	0		nc|ENSG00000106682|Q15056-2|EIF4H;ENSG00000106682|ENST00000265753|EIF4H;ENST00000479338.5_1_7:73588713-73604094:+|nuORF;ENST00000489484.5_1_7:73588713-73604262:+|nuORF	nc|ENSG00000106682|Q15056-2|EIF4H	nc|ENSG00000106682|Q15056-2|EIF4H	MULTI-MATCH	OvCa9_classI_Rep2	2		2	526.742762	1051.47097	-1.5839	-0.00083428	2.3017	0.0012124	0.71782	0.0003781	526.7433170005112	118.05	1.3427	117.9	117.39	118.73	-0.14754	0.2305	0.00069111	NaN	79.451	68	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65418			59117	2570	48756	48802							-0.052705565097539875
VEFFHVEDL	9	Unmodified	_VEFFHVEDL_					0	0	0		ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.7764892578125	2	567.776939	1133.53933	-0.86752	-0.00049256	0.67697	0.00038437	-0.19054	-0.00010819	567.7771994508223	121.62	2.1249	121.42	121.15	123.27	-0.19719					95	42	4	0	0	0	0.28934	2	11769	11757;11769		64.207	9.431	1	400470			59118	5047	48757	48803	64795;64796	64796					-0.02210267139230382
VEFFHVEDL	9	Unmodified	_VEFFHVEDL_					0	0	0		ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.7756958007812	2	567.776939	1133.53933	1.1775	0.00066856	-1.2971	-0.00073645	-0.11958	-6.7897E-05	567.776073067757	122.33	1.7732	121.3	121.01	122.78	-1.0286					90	33	4	0	0	0	0.053172	5	9395	9390;9395;9407;9413;9421		116.9	34.663	1	552320			59119	5047	48757	48803	64797;64798;64799;64800;64801	64798					-0.02210267139230382
VEFFHVEDL	9	Unmodified	_VEFFHVEDL_					0	0	0		ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	ENSG00000143384|ENST00000369026|MCL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.7766723632812	2	567.776939	1133.53933	0.90154	0.00051187	-1.1941	-0.00067796	-0.29252	-0.00016608	567.7761146108131	122.65	1.6329	121.28	121.01	122.64	-1.3666					99	32	4	0	0	0	0.19758	1	11592	11592		76.774	13.24	1	480490			59120	5047	48757	48803	64802	64802					-0.02210267139230382
VEFFNLVL	8	Unmodified	_VEFFNLVL_					0	0	0		MED12|p.K1768Qfs*3|1|0.17|ENSG00000184634|chrX:71136550-71136551|-/C|frameshift_variant;nc|ENSG00000184634|Q93074-3|MED12;ENSG00000184634|ENST00000374080|MED12;nc|ENSG00000184634|Q93074-2|MED12	MED12|p.K1768Qfs*3|1|0.17|ENSG00000184634|chrX:71136550-71136551|-/C|frameshift_variant	MED12|p.K1768Qfs*3|1|0.17|ENSG00000184634|chrX:71136550-71136551|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.7751159667969	2	490.776211	979.537869	-0.32966	-0.00016179	-3.824	-0.0018767	-4.1537	-0.0020385	490.77419441775845	91.729	2.1166	89.186	88.811	90.928	-2.5425					87	41	5	0	0	0	0.47599	1	7930	7930		79.939	0.48821	1	882540			59121	8177	48758	48804	64803	64803					0.04728143562670084
VEFKNVYF	8	Unmodified	_VEFKNVYF_					0	0	0		tr|A0A7D6ZU43|A0A7D6ZU43_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22705PE=4SV=1	tr|A0A7D6ZU43|A0A7D6ZU43_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22705PE=4SV=1	tr|A0A7D6ZU43|A0A7D6ZU43_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22705PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.26904296875	2	523.271293	1044.52803	-0.22588	-0.0001182	-4.2352	-0.0022162	-4.4611	-0.0023344	523.2690065306967	112.28	1.4786	110.77	110.21	111.69	-1.5111					72	28	4	0	0	0	0.64026	1	10386	10386		55.504	3.205	1	617760			59122	35766	48759	48805	64804	64804					0.007549555572722966
VEFREVTEL	9	Unmodified	_VEFREVTEL_					0	0	0		ENST00000267869.8_1_15:59931333-59949661:-|nuORF;ENSG00000140307|ENST00000396060|GTF2A2	ENST00000267869.8_1_15:59931333-59949661:-|nuORF	ENST00000267869.8_1_15:59931333-59949661:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	561.2949829101562	2	561.295496	1120.57644	3.2953	0.0018497	-0.78443	-0.00044029	2.5109	0.0014094	561.2948530707204	96.27	0.92582	96.27	95.997	96.923	0					44	21	3	0	0	0	0.2784	1	10536	10536		65.465	5.1714	1	2336400			59123	4831	48760	48806	64805	64805					0.02097404406526948
VEFREVTEL	9	Unmodified	_VEFREVTEL_					0	0	0		ENST00000267869.8_1_15:59931333-59949661:-|nuORF;ENSG00000140307|ENST00000396060|GTF2A2	ENST00000267869.8_1_15:59931333-59949661:-|nuORF	ENST00000267869.8_1_15:59931333-59949661:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	561.295496	1120.57644	1.135	0.00063707	-0.77181	-0.00043321	0.36319	0.00020386	561.294805334661	98.528	0.81916	96.149	95.871	96.69	-2.3786	-0.060619	1.0262E-05	NaN	65.465	23	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84218			59124	4831	48760	48806							0.02097404406526948
VEGDLKGPEI	10	Unmodified	_VEGDLKGPEI_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.8518676757812	2	528.782222	1055.54989	2.3493	0.0012423	-2.4709	-0.0013066	-0.12157	-6.4282E-05	528.7808755524204	107.58	0.71329	107.58	107.27	107.99	0					26	16	2	0	0	0	0.027363	1	12112	12112		85.161	8.3142	1	913570			59125	3687	48761	48807	64806	64806					0.024337155151897605
VEGDTFVF	8	Unmodified	_VEGDTFVF_					0	0	0			REV__ENSG00000110002|ENST00000456829|VWA5A	REV__ENSG00000110002|ENST00000456829|VWA5A	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.26165771484375	2	457.218726	912.422899	-0.28918	-0.00013222	3.0885	0.0014121	2.7993	0.0012799	457.22009916196254	55.823	0.29124	55.823	55.641	55.932	0					8	6	2	0	0	0	0.028476	1	4586	4586		83.287	25.476	1	96932	+		59126	17963	48762	48808	64807	64807					-0.03681585639139939
VEGESMMPTL	10	Unmodified	_VEGESMMPTL_					0	0	0		tr|A0A553SFS8|A0A553SFS8_NIACISignalpeptidaseIOS=NialliacirculansOX=1397GN=lepBPE=3SV=1	tr|A0A553SFS8|A0A553SFS8_NIACISignalpeptidaseIOS=NialliacirculansOX=1397GN=lepBPE=3SV=1	tr|A0A553SFS8|A0A553SFS8_NIACISignalpeptidaseIOS=NialliacirculansOX=1397GN=lepBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	546.7994995117188	2	547.248843	1092.48313	0.80691	0.00044158	-1.2615	-0.00069036	-0.45459	-0.00024878	547.2480305684608	121.81	1.0477	120.79	120.43	121.48	-1.0286					43	19	3	0	0	0	0.026802	1	9300	9300		26.693	4.733	1	84268			59127	33071	48763	48809	64808	64808					-0.05940979362571852
VEGGGVGAWWR	11	Unmodified	_VEGGGVGAWWR_					0	0	0			REV__ENST00000495957.1_1_8:22459568-22459924:+|nuORF	REV__ENST00000495957.1_1_8:22459568-22459924:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	587.2978515625	2	587.293622	1172.57269	-1.6508	-0.00096953	4.0757	0.0023937	2.4249	0.0014241	587.2959537221889	118.79	0.67799	117.44	117.15	117.83	-1.3444					47	12	4	0	0	0	0.71789	1	11180	11180		23.523	3.5259	1	1069100	+		59128	26753	48764	48810	64809	64809					-0.006692205766739789
VEGIFKRGI	9	Unmodified	_VEGIFKRGI_					0	0	0		tr|A0A7D7A4I5|A0A7D7A4I5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03260PE=3SV=1	tr|A0A7D7A4I5|A0A7D7A4I5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03260PE=3SV=1	tr|A0A7D7A4I5|A0A7D7A4I5_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03260PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	509.803466796875	2	509.805834	1017.59712	-1.3099	-0.00066782	-2.9211	-0.0014892	-4.231	-0.002157	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.6653	1	11215	11215		24.203	0	1	99460			59129	36146	48765	48811	64810	64810					0.08902039576844345
VEGKFDILF	9	Unmodified	_VEGKFDILF_					0	0	0		ENSG00000095485|ENST00000354105|CWF19L1;ENST00000468709.5_1_10:102020031-102027350:-|nuORF;ENST00000482452.5_1_10:102013195-102027350:-|nuORF	ENSG00000095485|ENST00000354105|CWF19L1	ENSG00000095485|ENST00000354105|CWF19L1	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.8053588867188	2	534.292225	1066.5699	2.4923	0.0013316	-0.53938	-0.00028819	1.9529	0.0010434	534.2919053796608	86.757	0.86726	86.757	86.511	87.378	0					41	19	4	0	0	0	0.027462	1	9209	9209		42.864	24.602	1	3098100			59130	1930	48766	48812	64811	64811					0.03927511245797177
VEGKRRRV	8	Unmodified	_VEGKRRRV_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa9_classI_Rep3	3	500.3141784667969	2	500.312149	998.609745	0.37155	0.00018589	1.9282	0.00096469	2.2997	0.0011506	500.31302313941114	128.99	2.6573	127.9	127.57	130.22	-1.0933					135	53	5	0	0	0	0.73626	1	10298	10298		33.516	0.70317	1	747300	+		59131	28942;32737	48767	48813	64812	64812					0.11038495759748912
VEGLPLLI	8	Unmodified	_VEGLPLLI_					0	0	0		SACS|p.V3288Tfs*46|1|0.07|ENSG00000151835|chr13:23334014-23334015|-/TGAAGGGATACTTTTTGTAAGTACGT|frameshift_variant;ENSG00000151835|ENST00000382292|SACS;nc|ENSG00000151835|Q9NZJ4-2|SACS	SACS|p.V3288Tfs*46|1|0.07|ENSG00000151835|chr13:23334014-23334015|-/TGAAGGGATACTTTTTGTAAGTACGT|frameshift_variant	SACS|p.V3288Tfs*46|1|0.07|ENSG00000151835|chr13:23334014-23334015|-/TGAAGGGATACTTTTTGTAAGTACGT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	427.274658203125	2	427.273304	852.532055	1.6743	0.0007154	0.61065	0.00026091	2.285	0.00097632	427.27342207211217	147.57	2.1036	147.57	147.21	149.31	0					75	42	3	0	0	0	0.68312	1	17326	17326		46.766	7.7449	1	231720			59132	5587	48768	48814	64813	64813					0.09989045050997447
VEGPAALTR	9	Unmodified	_VEGPAALTR_					0	0	0			REV__nc|ENSG00000138769|Q92772|CDKL2	REV__nc|ENSG00000138769|Q92772|CDKL2	MULTI-MSMS	OvCa99_classI_Rep5	1	457.26165771484375	2	457.258717	912.50288	-0.29696	-0.00013579	0.58038	0.00026539	0.28342	0.0001296	457.2588339396136	55.702	0.90096	55.702	55.193	56.094	0					31	21	2	0	0	0	0.14998	1	4586	4586		84.916	0	1	1591800	+		59133	19570	48769	48815	64814	64814					0.043129007547122455
VEGQEKAHNQ	10	Unmodified	_VEGQEKAHNQ_					0	0	0		ENSG00000197565|ENST00000334504|COL4A6;nc|ENSG00000197565|Q14031|COL4A6	ENSG00000197565|ENST00000334504|COL4A6	ENSG00000197565|ENST00000334504|COL4A6	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.8099975585938	2	570.275626	1138.5367	0.81626	0.0004655	2.4806	0.0014146	3.2968	0.0018801	570.2776243726996	153.06	0.54782	153.06	152.8	153.35	0					20	10	3	0	0	0	0.026968	1	17946	17946		29.17	12.453	1	34162			59134	8723	48770	48816	64815	64815					-0.02702722544199787
VEGQRLVYQF	10	Unmodified	_VEGQRLVYQF_					0	0	0		ENSG00000102034|ENST00000308167|ELF4;nc|ENSG00000120690|P32519-2|ELF1;ENSG00000120690|ENST00000239882|ELF1;nc|ENSG00000109381|Q15723-4|ELF2;nc|ENSG00000109381|Q15723-2|ELF2;nc|ENSG00000109381|Q15723-3|ELF2;nc|ENSG00000109381|Q15723-1|ELF2;ENSG00000109381|ENST00000686138|ELF2	ENSG00000102034|ENST00000308167|ELF4;nc|ENSG00000109381|Q15723-4|ELF2	ENSG00000102034|ENST00000308167|ELF4	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8311157226562	2	619.830037	1237.64552	0.91758	0.00056874	-0.86974	-0.00053909	0.047834	2.9649E-05	619.829353529556	96.765	1.9179	94.34	93.76	95.678	-2.4256					93	37	4	0	0	0	0.53396	1	8556	8556		50.034	0.49747	1	399430			59135	2219;2711	48771	48817	64816	64816					0.03620488426076918
VEGQRLVYQF	10	Unmodified	_VEGQRLVYQF_					0	0	0		ENSG00000102034|ENST00000308167|ELF4;nc|ENSG00000120690|P32519-2|ELF1;ENSG00000120690|ENST00000239882|ELF1;nc|ENSG00000109381|Q15723-4|ELF2;nc|ENSG00000109381|Q15723-2|ELF2;nc|ENSG00000109381|Q15723-3|ELF2;nc|ENSG00000109381|Q15723-1|ELF2;ENSG00000109381|ENST00000686138|ELF2	ENSG00000102034|ENST00000308167|ELF4;nc|ENSG00000109381|Q15723-4|ELF2	ENSG00000102034|ENST00000308167|ELF4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	619.830037	1237.64552	-0.77464	-0.00048014	0.3925	0.00024328	-0.38213	-0.00023686	619.8301330708233	95.304	1.5382	94.276	93.923	95.461	-1.0281	-0.044284	0.00071239	NaN	50.034	79	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	285370			59136	2219;2711	48771	48817							0.03620488426076918
VEGQRLVYQF	10	Unmodified	_VEGQRLVYQF_					0	0	0		ENSG00000102034|ENST00000308167|ELF4;nc|ENSG00000120690|P32519-2|ELF1;ENSG00000120690|ENST00000239882|ELF1;nc|ENSG00000109381|Q15723-4|ELF2;nc|ENSG00000109381|Q15723-2|ELF2;nc|ENSG00000109381|Q15723-3|ELF2;nc|ENSG00000109381|Q15723-1|ELF2;ENSG00000109381|ENST00000686138|ELF2	ENSG00000102034|ENST00000308167|ELF4;nc|ENSG00000109381|Q15723-4|ELF2	ENSG00000102034|ENST00000308167|ELF4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	619.830037	1237.64552	0.17147	0.00010628	-0.15131	-9.3787E-05	0.020161	1.2497E-05	619.8297919350564	96.175	1.7223	94.346	93.88	95.602	-1.8286	0.025463	3.8247E-05	NaN	50.034	88	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	397700			59137	2219;2711	48771	48817							0.03620488426076918
VEGRLSHSSLV	11	Unmodified	_VEGRLSHSSLV_					0	0	0		ENST00000595661.5_1_19:50534227-50534323:+|nuORF	ENST00000595661.5_1_19:50534227-50534323:+|nuORF	ENST00000595661.5_1_19:50534227-50534323:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	592.3170776367188	2	592.325119	1182.63569	1.4984	0.00088752	3.7684	0.0022321	5.2667	0.0031196	592.3270549951537	147.28	0.72966	147.28	147.01	147.74	0					38	14	5	0	0	0	0.34051	1	17233	17233		65.465	9.0316	1	282160			59138	14178	48772	48818	64817	64817					0.051673004207032136
VEGRRWRRRRR	11	Unmodified	_VEGRRWRRRRR_					0	0	0		ENST00000492275.5_1_21:38445580-38480706:+|nuORF;ENST00000355666.5_1_21:38445580-38459609:+|nuORF	ENST00000492275.5_1_21:38445580-38480706:+|nuORF	ENST00000492275.5_1_21:38445580-38480706:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3317260742188	3	528.317318	1581.93013	-0.4957	-0.00026189	3.9948	0.0021105	3.4991	0.0018486	528.3195906223914	50.921	0.47905	50.921	50.685	51.164	0					26	10	4	0	0	0	0.026416	1	3917	3917		4.8861	0	1	1008000			59139	10681	48773	48819	64818	64818					0.16243771473637025
VEGSFAKQL	9	Unmodified	_VEGSFAKQL_					0	0	0		nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;MYLK|p.E1444Sfs*9|1|0.06|ENSG00000065534|chr3:123649056-123649056|C/-|frameshift_variant;ENST00000506361.5_1_3:123456168-123512688:-|nuORF;MYLK|p.G628Efs*4|1|0.04|ENSG00000065534|chr3:123709815-123709816|-/T|frameshift_variant;MYLK|p.S609Rfs*34|1|0.05|ENSG00000065534|chr3:123709871-123709871|A/-|frameshift_variant	nc|ENSG00000065534|Q15746-5|MYLK	nc|ENSG00000065534|Q15746-5|MYLK	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.7678527832031	2	489.766374	977.518196	-0.52675	-0.00025799	0.61126	0.00029937	0.084507	4.1389E-05	489.7664019513592	70.732	1.1646	67.251	66.885	68.05	-3.4812					70	23	4	0	0	0	0.055627	1	5369	5369		115.49	44.198	1	640150			59140	1330	48774	48820	64819	64819					0.028537675519032746
VEGSFAKQL	9	Unmodified	_VEGSFAKQL_					0	0	0		nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;nc|ENSG00000065534|Q15746-4|MYLK;nc|ENSG00000065534|Q15746-3|MYLK;MYLK|p.E1444Sfs*9|1|0.06|ENSG00000065534|chr3:123649056-123649056|C/-|frameshift_variant;ENST00000506361.5_1_3:123456168-123512688:-|nuORF;MYLK|p.G628Efs*4|1|0.04|ENSG00000065534|chr3:123709815-123709816|-/T|frameshift_variant;MYLK|p.S609Rfs*34|1|0.05|ENSG00000065534|chr3:123709871-123709871|A/-|frameshift_variant	nc|ENSG00000065534|Q15746-5|MYLK	nc|ENSG00000065534|Q15746-5|MYLK	MULTI-MATCH	OvCa9_classI_Rep2	2		2	489.766374	977.518196	0.19893	9.7431E-05	-0.21816	-0.00010685	-0.019222	-9.4142E-06	489.76600639385987	69.823	1.2006	67.252	66.765	67.965	-2.5707	0.00070737	-0.0004035	NaN	115.49	63	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	132670			59141	1330	48774	48820							0.028537675519032746
VEGSRPVTEL	10	Unmodified	_VEGSRPVTEL_					0	0	0			REV__ENST00000411500.5_1_6:32520814-32525810:-|nuORF	REV__ENST00000411500.5_1_6:32520814-32525810:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	543.7941284179688	2	543.793121	1085.57169	-1.4073	-0.0007653	0.96398	0.00052421	-0.44336	-0.00024109	543.7933054901422	64.03	0.89576	64.03	63.607	64.503	0					30	21	2	0	0	0	0.48198	1	5803	5803		56.721	0	1	1562700	+		59142	22786	48775	48821	64820	64820					0.032325202637593975
VEGTTNWSPAS	11	Unmodified	_VEGTTNWSPAS_					0	0	0			REV__nc|ENSG00000115155|Q9HC10-4|OTOF	REV__nc|ENSG00000115155|Q9HC10-4|OTOF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	574.7871704101562	2	574.76456	1147.51457	-1.3758	-0.00079075	-2.7851	-0.0016008	-4.1608	-0.0023915	574.7630857048762	42.26	0.76398	39.279	39.011	39.775	-2.9804					25	14	2	0	0	0	0.025701	1	1948	1948		29.17	10.067	1	29503	+		59143	28809	48776	48822	64821	64821					-0.053289470125946536
VEGVVRILL	9	Unmodified	_VEGVVRILL_					0	0	0		INTS4-CYP2R1|1|fusion;ENSG00000149262|ENST00000534064|INTS4;INTS4-ALG8|2|fusion;INTS4-ALG8|1|fusion;nc|ENSG00000149262|Q96HW7-2|INTS4;INTS4-ALG8|4|fusion;INTS4-ALG8|3|fusion	INTS4-CYP2R1|1|fusion;INTS4-ALG8|4|fusion	INTS4-CYP2R1|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	499.3245849609375	2	499.32386	996.633166	1.8902	0.00094382	-0.16806	-8.3916E-05	1.7221	0.0008599	499.3236299609418	115.47	0.46957	115.47	115.21	115.68	0					14	9	2	0	0	0	0.37135	1	13187	13187		54.776	2.4771	1	177800			59144	14507;14506	48777	48823	64822	64822					0.13471496753720658
VEGYGILGLI	10	Unmodified	_VEGYGILGLI_					0	0	0			REV__tr|A0A7D6VUF6|A0A7D6VUF6_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07185PE=4SV=1	REV__tr|A0A7D6VUF6|A0A7D6VUF6_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07185PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.2996826171875	2	517.30005	1032.58555	-1.4707	-0.0007608	0.82914	0.00042891	-0.64158	-0.00033189	517.3004830920398	118.57	1.6171	117.22	116.89	118.51	-1.3444					59	30	3	0	0	0	0.50656	1	11122	11122		53.351	9.2347	1	192910	+		59145	31673	48778	48824	64823	64823					0.07055797762882321
VEHCQAIRH	9	Unmodified	_VEHCQAIRH_					0	0	0			REV__DGKK|p.N1110Cfs*6|1|0.17|ENSG00000274588|chrX:50376111-50376112|-/ACAG|frameshift_variant	REV__DGKK|p.N1110Cfs*6|1|0.17|ENSG00000274588|chrX:50376111-50376112|-/ACAG|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	546.7998657226562	2	546.772	1091.52945	0.84698	0.0004631	-1.4885	-0.00081384	-0.64148	-0.00035074	546.770999824489	121.62	0.94191	120.59	120.27	121.22	-1.0286					26	17	3	0	0	0	0.027462	1	9294	9294		23.042	0	1	25424	+		59146	16291	48779	48825	64824	64824					-0.012657336256097551
VEHDHPHAL	9	Unmodified	_VEHDHPHAL_					0	0	0		ENSG00000124784|ENST00000379834|RIOK1;ENST00000484626.1_1_6:7404210-7405259:+|nuORF	ENSG00000124784|ENST00000379834|RIOK1	ENSG00000124784|ENST00000379834|RIOK1	MULTI-MSMS	OvCa99_classI_Rep5	1	527.7569580078125	2	527.756872	1053.49919	-0.17476	-9.2228E-05	0.075303	3.9742E-05	-0.099452	-5.2487E-05	527.7568478405644	30.889	0.72813	30.889	30.682	31.41	0					30	14	3	0	0	0	0.11171	1	1222	1222		94.006	36.195	1	581290			59147	3680	48780	48826	64825	64825					-0.025417690191488873
VEHLGNLL	8	Unmodified	_VEHLGNLL_					0	0	0		ENSG00000128052|ENST00000263923|KDR	ENSG00000128052|ENST00000263923|KDR	ENSG00000128052|ENST00000263923|KDR	MULTI-MSMS	OvCa9_classI_Rep3	3	447.75616455078125	2	447.75581	893.497067	-0.88836	-0.00039777	0.11275	5.0485E-05	-0.77561	-0.00034728	447.7557112812271	91.834	1.8322	89.81	89.483	91.315	-2.0241					70	37	4	0	0	0	0.45246	1	5780	5780		82.305	10.927	1	520650			59148	3864	48781	48827	64826	64826					0.04605802243054313
VEHLGNLL	8	Unmodified	_VEHLGNLL_					0	0	0		ENSG00000128052|ENST00000263923|KDR	ENSG00000128052|ENST00000263923|KDR	ENSG00000128052|ENST00000263923|KDR	MULTI-MSMS	OvCa9_classI_Rep4_	4	447.7564697265625	2	447.75581	893.497067	-0.47418	-0.00021232	0.24589	0.0001101	-0.22829	-0.00010222	447.75580281894975	92.393	1.411	89.851	89.517	90.928	-2.5425					65	27	4	0	0	0	0.10246	2	8014	8014;8024		143.11	36.692	1	470300			59149	3864	48781	48827	64827;64828	64827					0.04605802243054313
VEHLGNLL	8	Unmodified	_VEHLGNLL_					0	0	0		ENSG00000128052|ENST00000263923|KDR	ENSG00000128052|ENST00000263923|KDR	ENSG00000128052|ENST00000263923|KDR	MULTI-MATCH	OvCa9_classI_Rep2	2		2	447.75581	893.497067	3.5912	0.001608	-3.8409	-0.0017198	-0.24973	-0.00011182	447.75399807709255	91.145	1.8406	89.909	89.538	91.378	-1.2355	0.052472	-0.0015946	NaN	143.11	76	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	295770			59150	3864	48781	48827							0.04605802243054313
VEHLMCLI	8	Unmodified	_VEHLMCLI_					0	0	0			REV__L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|237|1|anti-sense	REV__L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|237|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.7465515136719	2	479.248449	956.482345	2.1343	0.0010229	-2.599	-0.0012456	-0.46463	-0.00022267	479.24727526428256	95.463	0.3332	95.463	95.244	95.577	0					13	7	2	0	0	0	0.028476	1	10424	10424		19.36	0	1	491510	+		59151	28561	48782	48828	64829	64829					0.0023627077904393445
VEHLPLREG	9	Unmodified	_VEHLPLREG_					0	0	0			REV__chr6:31271868-31272583|229|23.39|0.0|21.16|-|1|HLA-C,None|1	REV__chr6:31271868-31272583|229|23.39|0.0|21.16|-|1|HLA-C,None|1	MULTI-MSMS	OvCa99_classI_Rep5	1	525.290771484375	2	525.290548	1048.56654	-0.75235	-0.0003952	0.38485	0.00020216	-0.3675	-0.00019305	525.2906740514139	55.335	1.4952	55.335	54.805	56.3	0					85	35	4	0	0	0	0.1944	1	4501	4501		77.318	11.514	1	8053300	+		59152	16072	48783	48829	64830	64830					0.044202611917853574
VEHMAEVHI	9	Unmodified	_VEHMAEVHI_					0	0	0		ENSG00000136273|ENST00000258774|HUS1;nc|ENSG00000136273|O60921-2|HUS1	ENSG00000136273|ENST00000258774|HUS1	ENSG00000136273|ENST00000258774|HUS1	MULTI-MSMS	OvCa9_classI_Rep3	3	532.763916015625	2	532.763309	1063.51206	1.0974	0.00058466	-1.2286	-0.00065458	-0.13123	-6.9913E-05	532.7625104763312	113.64	2.2165	112.57	112.01	114.22	-1.0753					113	43	4	0	0	0	0.50149	1	8389	8389		42.396	4.5846	1	496900			59153	4480	48784	48830	64831	64831					-0.017150739512771906
VEHPEVARL	9	Unmodified	_VEHPEVARL_					0	0	0		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF	nc|ENSG00000100201|Q92841-1|DDX17	nc|ENSG00000100201|Q92841-1|DDX17	MULTI-MSMS	OvCa99_classI_Rep5	1	525.2911376953125	2	525.290548	1048.56654	-0.75235	-0.0003952	0.38485	0.00020216	-0.3675	-0.00019305	525.2906740514139	55.335	1.4952	55.335	54.805	56.3	0					85	35	4	0	0	0	0.1804	1	4528	4528		79.713	10.926	1	8053300			59154	2023	48785	48831	64832	64832					0.044202611917853574
VEHTDGQSVL	10	Unmodified	_VEHTDGQSVL_					0	0	0		ENST00000471751.5_1_3:125166625-125239024:-|nuORF;ENSG00000114520|ENST00000251775|SNX4;ENST00000473417.5_1_3:125188296-125239016:-|nuORF	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	ENST00000471751.5_1_3:125166625-125239024:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	542.7658081054688	2	542.767103	1083.51965	-0.74671	-0.00040529	0.65549	0.00035578	-0.091221	-4.9512E-05	542.7672983319433	53.497	0.63917	53.497	53.214	53.854	0					56	14	6	0	0	0	0.41408	1	4255	4255		66.429	2.222	1	2355000			59155	3025	48786	48832	64833	64833					-0.018766431499670944
VEHVPGDYL	9	Unmodified	_VEHVPGDYL_					0	0	0			REV__ENSG00000151640|ENST00000338492|DPYSL4	REV__ENSG00000151640|ENST00000338492|DPYSL4	MULTI-MSMS	OvCa99_classI_Rep5	1	514.755126953125	2	514.756007	1027.49746	1.382	0.00071139	-1.7718	-0.00091205	-0.38982	-0.00020066	514.7548524737875	109.04	1.1888	109.04	108.71	109.9	0					64	26	4	0	0	0	0.46377	1	12332	12332		45.952	10.334	1	2183400	+		59156	20244	48787	48833	64834	64834					-0.01518822827756594
VEHYFEKP	8	Unmodified	_VEHYFEKP_					0	0	0			REV__ENSG00000174231|ENST00000304992|PRPF8	REV__ENSG00000174231|ENST00000304992|PRPF8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.2836303710938	2	524.758549	1047.50255	-0.22276	-0.0001169	0.099428	5.2176E-05	-0.12334	-6.4722E-05	524.7583438112887	115.45	0.64285	114.05	113.82	114.46	-1.3977					17	12	2	0	0	0	0.028476	1	10731	10731		40.573	6.4001	1	25484	+		59157	21818	48788	48834	64835	64835					-0.019305189651277033
VEIAEKNVL	9	Unmodified	_VEIAEKNVL_					0	0	0		AKAP9-CDK14|2|fusion;AKAP9-CDK14|1|fusion;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9	AKAP9-CDK14|2|fusion	AKAP9-CDK14|2|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	507.7970275878906	2	507.795132	1013.57571	2.1567	0.0010952	-0.48881	-0.00024821	1.6679	0.00084696	507.7949370376373	78.428	1.0267	78.428	78.134	79.16	0					63	24	4	0	0	0	0.033166	1	7950	7950		132.76	25.75	1	3078700			59158	58	48789	48835	64836	64836					0.06946609757483202
VEIAEKNVL	9	Unmodified	_VEIAEKNVL_					0	0	0		AKAP9-CDK14|2|fusion;AKAP9-CDK14|1|fusion;nc|ENSG00000127914|Q99996-5|AKAP9;nc|ENSG00000127914|Q99996-3|AKAP9;ENSG00000127914|ENST00000356239|AKAP9;nc|ENSG00000127914|Q99996-1|AKAP9;nc|ENSG00000127914|Q99996-6|AKAP9	AKAP9-CDK14|2|fusion	AKAP9-CDK14|2|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	507.795132	1013.57571	0.053827	2.7333E-05	-0.94631	-0.00048053	-0.89248	-0.0004532	507.79429210489553	79.818	1.1566	78.123	77.662	78.819	-1.6951	-0.1528	-0.00028608	NaN	132.76	35	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47013			59159	58	48789	48835							0.06946609757483202
VEIDGRIFL	9	Unmodified	_VEIDGRIFL_					0	0	0			REV__tr|A0A7D6VS25|A0A7D6VS25_9CLOTProline--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=proSPE=3SV=1	REV__tr|A0A7D6VS25|A0A7D6VS25_9CLOTProline--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=proSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	531.3025512695312	2	531.303124	1060.5917	-1.6359	-0.00086914	1.1184	0.00059418	-0.51752	-0.00027496	531.3036361456938	121.24	1.2365	121.04	120.75	121.99	-0.19718					54	24	3	0	0	0	0.40667	1	11711	11711		51.335	0	1	173930	+		59160	31462	48790	48836	64837	64837					0.06382315994369492
VEIEERGVKL	10	Unmodified	_VEIEERGVKL_					0	0	0		ENSG00000168385|ENST00000391971|SEPTIN2;nc|ENSG00000168385|Q15019-3|SEPTIN2;nc|ENSG00000168385|Q15019-2|SEPTIN2;ENST00000366210.2_1_2:242263647-242276275:+|nuORF;ENST00000467971.5_1_2:242255375-242276932:+|nuORF;ENST00000473479.5_1_2:242274588-242275589:+|nuORF	ENSG00000168385|ENST00000391971|SEPTIN2	ENSG00000168385|ENST00000391971|SEPTIN2	MULTI-MSMS	OvCa99_classI_Rep5	1	586.340087890625	2	586.337695	1170.66084	-0.31569	-0.0001851	0.41556	0.00024366	0.099867	5.8556E-05	586.3379624033115	71.486	1.4938	71.486	71.23	72.723	0					65	36	2	0	0	0	0.073842	3	6928	6898;6928;6962		120.31	21.677	1	39101000			59161	6897	48791	48837	64838;64839;64840	64839					0.08233355223296712
VEIFDIFDQ	9	Unmodified	_VEIFDIFDQ_					0	0	0			REV__TXNL4B|p.L115F|1|0.36|ENSG00000140830|chr16:72086742-72086742|C/A|missense_variant	REV__TXNL4B|p.L115F|1|0.36|ENSG00000140830|chr16:72086742-72086742|C/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.8163452148438	2	563.276772	1124.53899	0.88271	0.00049721	0.44597	0.00025121	1.3287	0.00074842	563.2769005370167	71.963	0.49801	71.963	71.835	72.333	0					18	11	3	0	0	0	0.027426	1	7027	7027		44.117	6.9577	1	278340	+		59162	32740	48792	48838	64841	64841					-0.018296868591050952
VEIGQFFGKPI	11	Unmodified	_VEIGQFFGKPI_					0	0	0			REV__tr|A0A7D6ZZY0|A0A7D6ZZY0_9CLOTDUF445domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21985PE=3SV=1	REV__tr|A0A7D6ZZY0|A0A7D6ZZY0_9CLOTDUF445domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21985PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	412.23175048828125	3	412.23253	1233.67576	1.934	0.00079726	-3.9345	-0.0016219	-2.0005	-0.00082465	412.2308161483838	65.879	3.828	62.933	62.452	66.28	-2.9459					181	75	4	0	0	0	0.70142	1	2647	2647		20.315	0	1	1016400	+		59163	32428	48793	48839	64842	64842					0.06826847091269883
VEIIEHGL	8	Unmodified	_VEIIEHGL_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	OvCa99_classI_Rep5	1	455.2568054199219	2	455.255643	908.496732	2.4319	0.0011072	-0.45803	-0.00020852	1.9739	0.00089864	455.2553455454906	82.629	1.2398	82.629	82.264	83.504	0					67	28	5	0	0	0	0.23117	2	8573	8552;8573		119.56	22.084	1	5255500			59164	3103	48794	48840	64843;64844	64844					0.03882382523192973
VEIKCFYI	8	Unmodified	_VEIKCFYI_					0	0	0			REV__ENSG00000178562|ENST00000324106|CD28	REV__ENSG00000178562|ENST00000324106|CD28	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.30303955078125	2	507.770071	1013.52559	-0.63768	-0.00032379	3.2	0.0016249	2.5623	0.0013011	507.7713557603193	82.864	0.97648	80.181	79.832	80.808	-2.683					31	18	2	0	0	0	0.028476	1	6830	6830		47.916	9.1095	1	106670	+		59165	22064	48795	48841	64845	64845					0.019367838279663374
VEILINNI	8	Unmodified	_VEILINNI_					0	0	0			REV__tr|A0A7D6VSK1|A0A7D6VSK1_9CLOTRecombinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13210PE=4SV=1	REV__tr|A0A7D6VSK1|A0A7D6VSK1_9CLOTRecombinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13210PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	463.3006591796875	2	464.279118	926.543683	-1.5683	-0.00072813	1.3232	0.00061435	-0.24505	-0.00011377	464.2794891830727	84.836	1.6454	83.29	82.693	84.338	-1.5462					51	32	2	0	0	0	0.028476	1	7278	7278		40.573	0	1	58636	+		59166	31512	48796	48842	64846	64846					0.07747242074333371
VEILKAVLPN	10	Unmodified	_VEILKAVLPN_					0	0	0		SPZ1|p.E340Afs*21|1|0.07|ENSG00000164299|chr5:80321233-80321234|-/CTGTGTTGCCC|frameshift_variant	SPZ1|p.E340Afs*21|1|0.07|ENSG00000164299|chr5:80321233-80321234|-/CTGTGTTGCCC|frameshift_variant	SPZ1|p.E340Afs*21|1|0.07|ENSG00000164299|chr5:80321233-80321234|-/CTGTGTTGCCC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	548.3433227539062	2	548.342249	1094.66995	0.60085	0.00032947	0.98165	0.00053828	1.5825	0.00086775	548.342897456207	151.81	0.42062	151.81	151.55	151.97	0					12	8	2	0	0	0	0.53807	1	17780	17780		49.536	13.089	1	77609			59167	32920	48797	48843	64847	64847					0.12639748579613297
VEILKEKN	8	Unmodified	_VEILKEKN_					0	0	0		nc|ENSG00000104133|Q96JI7-3|SPG11;ENSG00000104133|ENST00000261866|SPG11;nc|ENSG00000104133|Q96JI7-2|SPG11;RBFA-SPG11|2|fusion;RBFA-SPG11|1|fusion	nc|ENSG00000104133|Q96JI7-3|SPG11;RBFA-SPG11|2|fusion	nc|ENSG00000104133|Q96JI7-3|SPG11	MSMS	OvCa9_classI_Rep4_	4	486.7921447753906	2	486.78985	971.565146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.991	1	79.308	78.808	79.808	-2.6829								0	0	0	0.30129	1	6760	6760		76.774	5.4784	1				59168	2354;15543	48798	48844	64848	64848					0.07822627103041668
VEILTALR	8	Unmodified	_VEILTALR_					0	0	0		ENSG00000162441|ENST00000377223|LZIC;nc|ENSG00000162441|Q8WZA0-2|LZIC	ENSG00000162441|ENST00000377223|LZIC	ENSG00000162441|ENST00000377223|LZIC	MULTI-MSMS	OvCa99_classI_Rep5	1	457.7875061035156	2	457.78711	913.559667	-0.3404	-0.00015583	0.071595	3.2775E-05	-0.26881	-0.00012306	457.787009896286	48.239	1.1355	48.239	48.028	49.164	0					42	25	2	0	0	0	0.65062	1	3523	3523		53.351	0	1	3257400			59169	6183	48799	48845	64849	64849					0.09942948311220334
VEIPMLKR	8	Unmodified	_VEIPMLKR_					0	0	0			REV__tr|A0A553SK96|A0A553SK96_NIACIStageIVsporulationproteinFBOS=NialliacirculansOX=1397GN=CEQ21_18435PE=3SV=1	REV__tr|A0A553SK96|A0A553SK96_NIACIStageIVsporulationproteinFBOS=NialliacirculansOX=1397GN=CEQ21_18435PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	493.2990417480469	2	493.296788	984.579022	3.1299	0.001544	0.74498	0.0003675	3.8749	0.0019115	493.29693905803276	26.988	0.77444	24.278	24.097	24.871	-2.7097					47	21	3	0	0	0	0.75241	1	428	428		25.45	5.4534	1	72756	+		59170	30098	48800	48846	64850	64850					0.08611581330478657
VEISITDDTFT	11	Unmodified	_VEISITDDTFT_					0	0	0		nc|ENSG00000165478|Q14CZ8-2|HEPACAM;ENSG00000165478|ENST00000298251|HEPACAM	nc|ENSG00000165478|Q14CZ8-2|HEPACAM	nc|ENSG00000165478|Q14CZ8-2|HEPACAM	MULTI-SECPEP	OvCa99_classI_Rep5	1	413.7149658203125	3	414.202964	1239.58706	0.093042	3.8538E-05	-0.74978	-0.00031056	-0.65674	-0.00027202	414.2025013084786	65.542	0.23978	65.542	65.385	65.625	0					7	5	2	0	0	0	0.025638	1	6007	6007		26.75	0.85799	1	134600			59171	6564	48801	48847	64851	64851					-0.023146577297438853
VEISSTIL	8	Unmodified	_VEISSTIL_					0	0	0			REV__tr|A0A7D7A1Q0|A0A7D7A1Q0_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13470PE=4SV=1	REV__tr|A0A7D7A1Q0|A0A7D7A1Q0_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13470PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	431.7295837402344	2	431.250026	860.485499	-0.41331	-0.00017824	1.931	0.00083275	1.5177	0.00065451	431.25064315338574	25.508	0.45138	25.508	25.292	25.743	0					10	8	2	0	0	0	0.028476	1	595	595		24.203	0	1	20535	+		59172	32506	48802	48848	64852	64852					0.04967560429054174
VEITEESKALL	11	Unmodified	_VEITEESKALL_					0	0	0		nc|ENSG00000137100|O75935-3|DCTN3;ENSG00000137100|ENST00000259632|DCTN3;ENST00000479399.5_1_9:34613781-34614146:-|nuORF;ENST00000472418.5_1_9:34613781-34614781:-|nuORF;ENST00000481438.1_1_9:34614020-34614733:-|nuORF	nc|ENSG00000137100|O75935-3|DCTN3;ENST00000481438.1_1_9:34614020-34614733:-|nuORF	nc|ENSG00000137100|O75935-3|DCTN3	MSMS	OvCa99_classI_Rep5	1	616.3422241210938	2	616.342643	1230.67073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	95.126	1	95.126	94.626	95.626	0								0	0	0	0.039985	1	10375	10375		79.489	15.282	1				59173	4556;12545	48803	48849	64853	64853					0.06462498438008879
VEITELPVR	9	Unmodified	_VEITELPVR_					0	0	0		nc|ENSG00000077097|Q02880-2|TOP2B;ENSG00000077097|ENST00000264331|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	nc|ENSG00000077097|Q02880-2|TOP2B	MULTI-MSMS	OvCa9_classI_Rep2	2	528.3084716796875	2	528.308406	1054.60226	-0.56939	-0.00030082	0.45869	0.00024233	-0.1107	-5.8485E-05	528.3085291604756	95.417	1.4392	94.389	94.022	95.461	-1.0281					70	28	4	0	0	0	0.27001	2	8575	8575;8593		66.429	0	1	438090			59174	1564	48804	48850	64854;64855	64854					0.07714298648807016
VEITGMTEY	9	Unmodified	_VEITGMTEY_					0	0	0			REV__ENSG00000154174|ENST00000284320|TOMM70	REV__ENSG00000154174|ENST00000284320|TOMM70	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.2730712890625	2	521.741708	1041.46886	-1.6017	-0.00083567	-2.3548	-0.0012286	-3.9565	-0.0020643	522.2414720018453	95.491	1.0055	93.022	92.511	93.516	-2.4685					27	19	2	0	0	0	0.027462	1	8452	8452		15.642	0	1	19500	+		59175	20364	48805	48851	64856	64856					-0.05021308519212653
VEIYSSDVIT	10	Unmodified	_VEIYSSDVIT_					0	0	0		tr|A0A553STS9|A0A553STS9_NIACIPeptidoglycanbindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05705PE=4SV=1	tr|A0A553STS9|A0A553STS9_NIACIPeptidoglycanbindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05705PE=4SV=1	tr|A0A553STS9|A0A553STS9_NIACIPeptidoglycanbindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_05705PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.76611328125	2	563.287337	1124.56012	-0.87884	-0.00049504	-1.7845	-0.0010052	-2.6633	-0.0015002	563.2862804329046	43.906	0.55985	43.906	43.478	44.038	0					24	12	3	0	0	0	0.026688	1	2900	2900		25.574	2.5316	1	189400			59176	34529	48806	48852	64857	64857					0.0028227844975390326
VEKAIENAL	9	Unmodified	_VEKAIENAL_					0	0	0			REV__tr|A0A7D7A2V9|A0A7D7A2V9_9CLOTProbablebutyratekinaseOS=ClostridiumintestinaleOX=36845GN=bukPE=3SV=1	REV__tr|A0A7D7A2V9|A0A7D7A2V9_9CLOTProbablebutyratekinaseOS=ClostridiumintestinaleOX=36845GN=bukPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.7809143066406	2	493.779482	985.544411	0.32848	0.0001622	-0.89608	-0.00044247	-0.56761	-0.00028027	493.7789253241967	47.887	1.1148	44.779	44.336	45.451	-3.1077					40	21	2	0	0	0	0.53483	1	2603	2603		39.253	0	1	293860	+		59177	32554	48807	48853	64858	64858					0.0510603672336174
VEKAIENAL	9	Unmodified	_VEKAIENAL_					0	0	0			REV__tr|A0A7D7A2V9|A0A7D7A2V9_9CLOTProbablebutyratekinaseOS=ClostridiumintestinaleOX=36845GN=bukPE=3SV=1	REV__tr|A0A7D7A2V9|A0A7D7A2V9_9CLOTProbablebutyratekinaseOS=ClostridiumintestinaleOX=36845GN=bukPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	493.779482	985.544411	-0.18343	-9.0575E-05	-0.40036	-0.00019769	-0.58379	-0.00028826	493.7791536921806	47.543	1.0889	44.834	44.44	45.529	-2.7097	0.027332	0.00024543	NaN	39.253	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62478	+		59178	32554	48807	48853							0.0510603672336174
VEKAIENAL	9	Unmodified	_VEKAIENAL_					0	0	0			REV__tr|A0A7D7A2V9|A0A7D7A2V9_9CLOTProbablebutyratekinaseOS=ClostridiumintestinaleOX=36845GN=bukPE=3SV=1	REV__tr|A0A7D7A2V9|A0A7D7A2V9_9CLOTProbablebutyratekinaseOS=ClostridiumintestinaleOX=36845GN=bukPE=3SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	493.779482	985.544411	0.32848	0.0001622	-0.89608	-0.00044247	-0.56761	-0.00028027	493.7789253241967	47.887	1.1148	44.779	44.336	45.451	-3.1077	-0.027332	-0.00024412	NaN	39.253	40	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	293860	+		59179	32554	48807	48853							0.0510603672336174
VEKARVKTKSH	11	Unmodified	_VEKARVKTKSH_					0	0	0			REV__tr|A0A553SRX1|A0A553SRX1_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_01960PE=3SV=1	REV__tr|A0A553SRX1|A0A553SRX1_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_01960PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	641.882080078125	2	641.883136	1281.75172	-4.6434	-0.0029805	3.7859	0.0024301	-0.85746	-0.00055039	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.72479	1	15474	15474		18.262	0.79408	1	543390	+		59180	30772	48808	48854	64859	64859					0.12211243991396259
VEKAVAVF	8	Unmodified	_VEKAVAVF_					0	0	0		nc|ENSG00000138821|Q9C0K1-2|SLC39A8;nc|ENSG00000138821|Q9C0K1-3|SLC39A8;ENSG00000138821|ENST00000356736|SLC39A8	nc|ENSG00000138821|Q9C0K1-2|SLC39A8	nc|ENSG00000138821|Q9C0K1-2|SLC39A8	MSMS	OvCa9_classI_Rep4_	4	431.7557373046875	2	431.755278	861.496004	NaN	NaN	NaN	NaN	NaN	NaN	NaN	77.895	1	75.078	74.578	75.578	-2.8165								0	0	0	0.30129	1	6250	6250		94.006	20.032	1				59181	4736	48809	48855	64860	64860					0.05971587874137185
VEKCQRAII	9	Unmodified	_VEKCQRAII_					0	0	0		ENSG00000198203|ENST00000251481|SULT1C2;nc|ENSG00000198203|O00338-2|SULT1C2	ENSG00000198203|ENST00000251481|SULT1C2	ENSG00000198203|ENST00000251481|SULT1C2	MULTI-MSMS	OvCa9_classI_Rep2	2	530.2984619140625	2	530.302601	1058.59065	-1.5885	-0.00084236	-2.5378	-0.0013458	-4.1262	-0.0021882	530.3012131218308	99.958	1.4879	99.127	98.666	100.15	-0.83052					62	29	4	0	0	0	0.3076	1	9120	9120		62.107	0	1	407780			59182	8796	48810	48856	64861	64861					0.06369778353814581
VEKDKQKSYK	10	Unmodified	_VEKDKQKSYK_					0	0	0			REV__tr|A0A7D6ZGE0|A0A7D6ZGE0_9CLOTClassIIaldolase/adducinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18115PE=4SV=1	REV__tr|A0A7D6ZGE0|A0A7D6ZGE0_9CLOTClassIIaldolase/adducinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18115PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	626.8501586914062	2	626.848427	1251.6823	0.21989	0.00013784	0.056836	3.5628E-05	0.27673	0.00017347	626.848250380794	64.282	1.3113	60.807	60.49	61.802	-3.475					81	26	5	0	0	0	0.43433	1	4573	4573		63.534	0	1	1309000	+		59183	31995	48811	48857	64862	64862					0.06652740252002332
VEKDKQKSYK	10	Unmodified	_VEKDKQKSYK_					0	0	0			REV__tr|A0A7D6ZGE0|A0A7D6ZGE0_9CLOTClassIIaldolase/adducinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18115PE=4SV=1	REV__tr|A0A7D6ZGE0|A0A7D6ZGE0_9CLOTClassIIaldolase/adducinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18115PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	626.848427	1251.6823	-1.9964	-0.0012514	3.1735	0.0019893	1.1771	0.00073788	626.8494393676852	63.613	1.5747	60.869	60.004	61.579	-2.7444	0.030952	0.0033874	NaN	63.534	82	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	210400	+		59184	31995	48811	48857							0.06652740252002332
VEKDLDEVL	9	Unmodified	_VEKDLDEVL_					0	0	0		ENSG00000126524|ENST00000246868|SBDS	ENSG00000126524|ENST00000246868|SBDS	ENSG00000126524|ENST00000246868|SBDS	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.2838134765625	2	530.282054	1058.54956	-2.0777	-0.0011018	1.4983	0.0007945	-0.57942	-0.00030726	530.2827739364845	88.643	1.4385	86.04	85.832	87.27	-2.6027					68	28	3	0	0	0	0.2784	1	7576	7576		65.465	6.6834	1	234840			59185	3786	48812	48858	64863	64863					0.02262295795344471
VEKDLDEVL	9	Unmodified	_VEKDLDEVL_					0	0	0		ENSG00000126524|ENST00000246868|SBDS	ENSG00000126524|ENST00000246868|SBDS	ENSG00000126524|ENST00000246868|SBDS	MULTI-MATCH	OvCa9_classI_Rep3	3		2	530.282054	1058.54956	-0.48746	-0.00025849	0.36407	0.00019306	-0.12339	-6.5434E-05	530.2822116081029	88.203	1.7418	86.072	85.545	87.287	-2.1309	0.015833	-0.00055783	NaN	65.465	83	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	278160			59186	3786	48812	48858							0.02262295795344471
VEKEFEPLL	9	Unmodified	_VEKEFEPLL_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;HSP90B1|p.I687Vfs*9|1|0.07|ENSG00000166598|chr12:103946648-103946649|-/GTGCTCCAGGTACTTGGGACTC|frameshift_variant;ENST00000415545.2_1_1:92108345-92109332:+|nuORF;ENST00000551983.1_1_12:104335630-104337190:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	OvCa9_classI_Rep2	2	552.3020629882812	2	552.30279	1102.59103	-0.39855	-0.00022012	-0.57118	-0.00031547	-0.96973	-0.00053558	552.3024243356685	101.75	4.8536	100.98	100.62	105.47	-0.76401					212	97	3	0	0	0	0.0070314	14	9339	9324;9329;9333;9339;9345;9351;9357;9363;9370;9376;9389;9400;9413;9419		195.06	58.795	1	3368600			59187	6697	48813	48859	64864;64865;64866;64867;64868;64869;64870;64871;64872;64873;64874;64875;64876;64877	64867					0.043834765546762355
VEKEFEPLL	9	Unmodified	_VEKEFEPLL_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;HSP90B1|p.I687Vfs*9|1|0.07|ENSG00000166598|chr12:103946648-103946649|-/GTGCTCCAGGTACTTGGGACTC|frameshift_variant;ENST00000415545.2_1_1:92108345-92109332:+|nuORF;ENST00000551983.1_1_12:104335630-104337190:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	OvCa9_classI_Rep3	3	552.3032836914062	2	552.30279	1102.59103	-0.82911	-0.00045792	-0.12485	-6.8957E-05	-0.95397	-0.00052688	552.3026423287465	102.49	3.7537	100.97	100.53	104.28	-1.5211					161	71	3	0	0	0	0.0083158	15	7066	7037;7042;7048;7054;7066;7072;7079;7086;7093;7098;7104;7110;7116;7121;7127		219.56	62.235	1	4641500			59188	6697	48813	48859	64878;64879;64880;64881;64882;64883;64884;64885;64886;64887;64888;64889;64890;64891;64892	64882					0.043834765546762355
VEKEFEPLL	9	Unmodified	_VEKEFEPLL_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;HSP90B1|p.I687Vfs*9|1|0.07|ENSG00000166598|chr12:103946648-103946649|-/GTGCTCCAGGTACTTGGGACTC|frameshift_variant;ENST00000415545.2_1_1:92108345-92109332:+|nuORF;ENST00000551983.1_1_12:104335630-104337190:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.3032836914062	2	552.30279	1102.59103	-0.31636	-0.00017473	-0.40677	-0.00022466	-0.72313	-0.00039939	552.3025424347279	103.16	3.6037	100.96	100.57	104.17	-2.1994					157	69	3	0	0	0	0.0086488	10	9302	9291;9302;9314;9326;9339;9352;9363;9375;9386;9400		176.09	32.2	1	4317600			59189	6697	48813	48859	64893;64894;64895;64896;64897;64898;64899;64900;64901;64902	64894					0.043834765546762355
VEKETRSKL	9	Unmodified	_VEKETRSKL_					0	0	0		ENSG00000205726|ENST00000381318|ITSN1;nc|ENSG00000205726|Q15811-13|ITSN1;nc|ENSG00000205726|Q15811-8|ITSN1;nc|ENSG00000205726|Q15811-9|ITSN1;nc|ENSG00000205726|Q15811-4|ITSN1;ITSN1|p.S1555Tfs*2|1|0.04|ENSG00000205726|chr21:33883659-33883659|G/-|frameshift_variant;ITSN1|p.V1253Sfs*9|1|0.27|ENSG00000205726|chr21:33856831-33856849|GTGAATGACCTGCAGCTGG/-|frameshift_variant;CON__ENSEMBL:ENSBTAP00000001528;nc|ENSG00000205726|Q15811-2|ITSN1;nc|ENSG00000205726|Q15811-7|ITSN1;nc|ENSG00000205726|Q15811-10|ITSN1;nc|ENSG00000205726|Q15811-3|ITSN1;nc|ENSG00000205726|Q15811-11|ITSN1;nc|ENSG00000205726|Q15811-12|ITSN1;nc|ENSG00000205726|Q15811-5|ITSN1;nc|ENSG00000205726|Q15811-6|ITSN1;ITSN1|p.G971Wfs*19|1|0.03|ENSG00000205726|chr21:33818449-33818450|-/T|frameshift_variant	ENSG00000205726|ENST00000381318|ITSN1	ENSG00000205726|ENST00000381318|ITSN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.318115234375	2	545.316763	1088.61897	-0.51373	-0.00028014	0.45215	0.00024656	-0.061581	-3.3581E-05	545.3169196404446	142.63	4.7541	141.19	139.73	144.49	-1.4427					172	91	2	0	0	0	0.57283	1	13860	13860		35.152	4.6484	1	155190		+	59190	602	48814	48860	64903	64903					0.07820799534783873
VEKEYMKQL	9	Unmodified	_VEKEYMKQL_					0	0	0		ENSG00000146263|ENST00000683635|MMS22L	ENSG00000146263|ENST00000683635|MMS22L	ENSG00000146263|ENST00000683635|MMS22L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	584.7816772460938	2	584.307549	1166.60055	0.58897	0.00034414	1.9359	0.0011312	2.5249	0.0014753	584.3089134012044	86.537	0.63883	83.91	83.562	84.201	-2.6269					23	12	3	0	0	0	0.027441	1	7334	7334		40.778	0	1	40502			59191	5280	48815	48861	64904	64904					0.023909215685534946
VEKFGDLIL	9	Unmodified	_VEKFGDLIL_					0	0	0		PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant;PRPF8|p.Q2065Hfs*8|1|0.04|ENSG00000174231|chr17:1653809-1653810|-/G|frameshift_variant;ENSG00000174231|ENST00000304992|PRPF8;PITPNA-PRPF8|1|fusion	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant;PITPNA-PRPF8|1|fusion	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	517.2988891601562	2	517.30005	1032.58555	-0.97738	-0.0005056	0.77818	0.00040255	-0.19919	-0.00010304	517.3002641504664	117.39	1.7876	117.26	116.96	118.75	-0.12869					61	35	4	0	0	0	0.42576	1	11256	11256		49.536	1.6204	1	137800			59192	7449;15503	48816	48862	64905	64905					0.07055797762882321
VEKGHFAEL	9	Unmodified	_VEKGHFAEL_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.272705078125	2	515.271824	1028.5291	-0.15764	-8.1228E-05	-1.2502	-0.00064418	-1.4078	-0.00072541	515.2717360531351	59.214	1.1861	55.822	55.502	56.689	-3.392					51	23	4	0	0	0	0.084918	1	3941	3941		101.25	37.045	1	699720			59193	1827	48817	48863	64906	64906					0.015971699261854155
VEKIDFDSV	9	Unmodified	_VEKIDFDSV_					0	0	0		ENSG00000178982|ENST00000248342|EIF3K	ENSG00000178982|ENST00000248342|EIF3K	ENSG00000178982|ENST00000248342|EIF3K	MULTI-MSMS	OvCa9_classI_Rep3	3	526.267578125	2	526.268947	1050.52334	-1.3095	-0.00068913	1.7311	0.00091105	0.42168	0.00022192	526.2697868812403	90.772	1.7683	88.692	88.31	90.079	-2.0805					73	34	3	0	0	0	0.040625	3	5653	5653;5658;5666		126.24	48.925	1	643660			59194	7789	48818	48864	64907;64908;64909	64907					0.00010026623863268469
VEKIDFDSV	9	Unmodified	_VEKIDFDSV_					0	0	0		ENSG00000178982|ENST00000248342|EIF3K	ENSG00000178982|ENST00000248342|EIF3K	ENSG00000178982|ENST00000248342|EIF3K	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.2676391601562	2	526.268947	1050.52334	-1.0375	-0.00054601	1.3029	0.00068569	0.2654	0.00013967	526.2696090049877	91.277	1.3725	88.734	88.449	89.822	-2.5425					52	26	2	0	0	0	0.11322	3	7890	7880;7890;7905		93.598	29.141	1	566040			59195	7789	48818	48864	64910;64911;64912	64911					0.00010026623863268469
VEKIYRCDD	9	Unmodified	_VEKIYRCDD_					0	0	0			REV__ENSG00000270379|ENST00000604834|HEATR9	REV__ENSG00000270379|ENST00000604834|HEATR9	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.33984375	2	570.771331	1139.52811	2.1689	0.0012379	-1.611	-0.00091952	0.55787	0.00031842	570.7701758071208	78.488	0.24635	78.488	78.294	78.54	0					8	5	2	0	0	0	0.027426	1	7951	7951		47.657	0	1	120630	+		59196	23604	48819	48865	64913	64913					-0.036074125050163275
VEKKKEPSV	9	Unmodified	_VEKKKEPSV_					0	0	0		nc|ENSG00000167674|Q7Z4V5-2|HDGFL2;ENSG00000167674|ENST00000616600|HDGFL2;nc|ENSG00000167674|Q7Z4V5-4|HDGFL2;nc|ENSG00000167674|Q7Z4V5-3|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	nc|ENSG00000167674|Q7Z4V5-2|HDGFL2	MULTI-MSMS	OvCa9_classI_Rep2	2	522.3086547851562	2	522.308406	1042.60226	1.1225	0.00058629	-1.4353	-0.00074966	-0.31279	-0.00016338	522.3075429307077	30.251	0.69123	27.542	27.31	28.002	-2.7097					32	13	4	0	0	0	0.48047	2	809	803;809		44.377	1.5129	1	77361			59197	6829	48820	48866	64914;64915	64915					0.08266298648823067
VEKKKIRSL	9	Unmodified	_VEKKKIRSL_					0	0	0		ENST00000483992.5_1_2:27995243-28002346:+|nuORF;ENSG00000243147|ENST00000296102|MRPL33	ENST00000483992.5_1_2:27995243-28002346:+|nuORF	ENST00000483992.5_1_2:27995243-28002346:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.8601684570312	2	550.861141	1099.70773	0.60137	0.00033127	-0.19761	-0.00010886	0.40376	0.00022241	550.8607980085386	32.86	1.1654	30.165	29.782	30.947	-2.6954					52	23	3	0	0	0	0.44248	2	814	814;830		47.96	3.5823	1	105340			59198	9372	48821	48867	64916;64917	64916					0.16186259565097316
VEKKKVRKI	9	Unmodified	_VEKKKVRKI_					0	0	0			REV__ENSG00000206530|ENST00000393845|CFAP44	REV__ENSG00000206530|ENST00000393845|CFAP44	MULTI-MSMS	OvCa99_classI_Rep5	1	564.384521484375	2	564.384783	1126.75501	0.44554	0.00025146	-0.74926	-0.00042287	-0.30372	-0.00017141	564.3842699877241	32.13	0.64601	32.13	31.956	32.602	0					32	12	4	0	0	0	0.60342	1	1374	1374		31.53	3.6476	1	606860	+		59199	23240	48822	48868	64918	64918					0.1967053883608969
VEKKSVAKL	9	Unmodified	_VEKKSVAKL_					0	0	0		nc|ENSG00000101182|O14818-4|PSMA7;ENST00000484488.5_1_20:60714188-60718428:-|nuORF;ENSG00000101182|ENST00000370873|PSMA7;ENSG00000154611|ENST00000415576|PSMA8;nc|ENSG00000154611|Q8TAA3|PSMA8	nc|ENSG00000101182|O14818-4|PSMA7	nc|ENSG00000101182|O14818-4|PSMA7	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.3216857910156	2	501.321317	1000.62808	0.32656	0.00016371	-0.3343	-0.00016759	-0.0077429	-3.8817E-06	501.3209974321088	33.877	1.0418	31.089	30.854	31.896	-2.7881					45	20	3	0	0	0	0.2077	1	952	952		75.043	5.4157	1	67674			59200	2146	48823	48869	64919	64919					0.1277919289109377
VEKLDSSVVI	10	Unmodified	_VEKLDSSVVI_					0	0	0		ENSG00000146243|ENST00000369940|IRAK1BP1	ENSG00000146243|ENST00000369940|IRAK1BP1	ENSG00000146243|ENST00000369940|IRAK1BP1	MULTI-MSMS	OvCa99_classI_Rep5	1	544.8148803710938	2	544.813522	1087.61249	1.5185	0.00082731	1.4071	0.00076663	2.9257	0.0015939	544.8137290970839	92.321	0.80341	92.321	91.668	92.472	0					25	18	2	0	0	0	0.17251	1	9965	9965		98.582	10.828	1	2994700			59201	5277	48824	48870	64920	64920					0.07218861583396574
VEKLDSSVVI	10	Unmodified	_VEKLDSSVVI_					0	0	0		ENSG00000146243|ENST00000369940|IRAK1BP1	ENSG00000146243|ENST00000369940|IRAK1BP1	ENSG00000146243|ENST00000369940|IRAK1BP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	544.813522	1087.61249	-0.34215	-0.00018641	0.19115	0.00010414	-0.15101	-8.2271E-05	544.8135984443109	93.507	1.2902	92.339	91.806	93.096	-1.168	0.019612	-0.00026188	NaN	98.582	46	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189440			59202	5277	48824	48870							0.07218861583396574
VEKLDSSVVI	10	Unmodified	_VEKLDSSVVI_					0	0	0		ENSG00000146243|ENST00000369940|IRAK1BP1	ENSG00000146243|ENST00000369940|IRAK1BP1	ENSG00000146243|ENST00000369940|IRAK1BP1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	544.813522	1087.61249	-0.87957	-0.0004792	0.58162	0.00031688	-0.29795	-0.00016232	544.813766172701	94.189	1.0642	92.294	91.95	93.014	-1.8956	-0.025854	0.0001636	NaN	98.582	50	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	290110			59203	5277	48824	48870							0.07218861583396574
VEKLEDEEL	9	Unmodified	_VEKLEDEEL_					0	0	0			REV__tr|A0A7D7A2L5|A0A7D7A2L5_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17590PE=4SV=1	REV__tr|A0A7D7A2L5|A0A7D7A2L5_9CLOTDEAD/DEAHboxhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17590PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	552.2796020507812	2	552.276969	1102.53938	1.0377	0.0005731	4.2026	0.002321	5.2403	0.0028941	552.2789463348428	113.66	1.6789	113.54	113.02	114.7	-0.11777					68	33	3	0	0	0	0.51865	1	10794	10794		40.778	0	1	104970	+		59204	32544	48825	48871	64921	64921					-0.007783119298892416
VEKLEQLI	8	Unmodified	_VEKLEQLI_					0	0	0		LRRK2|p.R1462Qfs*6|1|0.1|ENSG00000188906|chr12:40310497-40310498|CG/-|frameshift_variant;ENSG00000188906|ENST00000298910|LRRK2	LRRK2|p.R1462Qfs*6|1|0.1|ENSG00000188906|chr12:40310497-40310498|CG/-|frameshift_variant	LRRK2|p.R1462Qfs*6|1|0.1|ENSG00000188906|chr12:40310497-40310498|CG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.29217529296875	2	486.292225	970.569897	-0.66971	-0.00032568	0.52562	0.00025561	-0.14409	-7.0069E-05	486.29220881915757	82.112	0.77226	79.429	79.109	79.881	-2.6829					33	15	3	0	0	0	0.42649	1	6771	6771		84.916	0	1	483200			59205	8515	48826	48872	64922	64922					0.08343511245811897
VEKLEQLI	8	Unmodified	_VEKLEQLI_					0	0	0		LRRK2|p.R1462Qfs*6|1|0.1|ENSG00000188906|chr12:40310497-40310498|CG/-|frameshift_variant;ENSG00000188906|ENST00000298910|LRRK2	LRRK2|p.R1462Qfs*6|1|0.1|ENSG00000188906|chr12:40310497-40310498|CG/-|frameshift_variant	LRRK2|p.R1462Qfs*6|1|0.1|ENSG00000188906|chr12:40310497-40310498|CG/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	486.292225	970.569897	0.50397	0.00024508	-0.049578	-2.411E-05	0.45439	0.00022097	486.29174011135547	81.3	0.75525	79.652	79.164	79.919	-1.6485	0.11145	-0.00024143	NaN	84.916	27	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	260110			59206	8515	48826	48872							0.08343511245811897
VEKLSIPV	8	Unmodified	_VEKLSIPV_					0	0	0		tr|A0A7D6ZV40|A0A7D6ZV40_9CLOTPF03932familyproteinCutCOS=ClostridiumintestinaleOX=36845GN=cutCPE=3SV=1	tr|A0A7D6ZV40|A0A7D6ZV40_9CLOTPF03932familyproteinCutCOS=ClostridiumintestinaleOX=36845GN=cutCPE=3SV=1	tr|A0A7D6ZV40|A0A7D6ZV40_9CLOTPF03932familyproteinCutCOS=ClostridiumintestinaleOX=36845GN=cutCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	442.7757873535156	2	442.776211	883.537869	1.7658	0.00078185	-1.5731	-0.00069653	0.19268	8.5315E-05	442.77539906506104	113.91	1.5302	113.79	113.47	115	-0.11777					66	30	3	0	0	0	0.59904	1	10849	10849		64.207	2.0999	1	257310			59207	35791	48827	48873	64923	64923					0.09144143562650697
VEKLSIPV	8	Unmodified	_VEKLSIPV_					0	0	0		tr|A0A7D6ZV40|A0A7D6ZV40_9CLOTPF03932familyproteinCutCOS=ClostridiumintestinaleOX=36845GN=cutCPE=3SV=1	tr|A0A7D6ZV40|A0A7D6ZV40_9CLOTPF03932familyproteinCutCOS=ClostridiumintestinaleOX=36845GN=cutCPE=3SV=1	tr|A0A7D6ZV40|A0A7D6ZV40_9CLOTPF03932familyproteinCutCOS=ClostridiumintestinaleOX=36845GN=cutCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	442.7758483886719	2	442.776211	883.537869	0.19053	8.4361E-05	-0.046582	-2.0626E-05	0.14395	6.3736E-05	442.77602560643373	114.63	1.6302	113.58	113.15	114.78	-1.055					71	32	4	0	0	0	0.35821	1	8484	8484		96.19	5.4138	1	301840			59208	35791	48827	48873	64924	64924					0.09144143562650697
VEKMTSILL	9	Unmodified	_VEKMTSILL_					0	0	0		tr|A0A7D7A0X1|A0A7D7A0X1_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02280PE=4SV=1	tr|A0A7D7A0X1|A0A7D7A0X1_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02280PE=4SV=1	tr|A0A7D7A0X1|A0A7D7A0X1_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02280PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	517.2994384765625	2	517.301736	1032.58892	-0.97737	-0.0005056	-2.4799	-0.0012829	-3.4573	-0.0017885	517.3002641504664	117.39	1.7876	117.26	116.96	118.75	-0.12869					61	35	4	0	0	0	0.2077	2	11237	11237;11250		75.043	11.509	1	137800			59209	36012	48828	48874	64925;64926	64925					0.07392724545229612
VEKMTSILL	9	Unmodified	_VEKMTSILL_					0	0	0		tr|A0A7D7A0X1|A0A7D7A0X1_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02280PE=4SV=1	tr|A0A7D7A0X1|A0A7D7A0X1_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02280PE=4SV=1	tr|A0A7D7A0X1|A0A7D7A0X1_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02280PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.2998657226562	2	517.301736	1032.58892	-1.4707	-0.0007608	-2.4289	-0.0012565	-3.8997	-0.0020173	517.3004830920398	118.57	1.6171	117.22	116.89	118.51	-1.3444					59	30	3	0	0	0	0.1804	1	11109	11109		79.713	2.395	1	192910			59210	36012	48828	48874	64927	64927					0.07392724545229612
VEKMTSILL	9	Unmodified	_VEKMTSILL_					0	0	0		tr|A0A7D7A0X1|A0A7D7A0X1_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02280PE=4SV=1	tr|A0A7D7A0X1|A0A7D7A0X1_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02280PE=4SV=1	tr|A0A7D7A0X1|A0A7D7A0X1_9CLOTTetR/AcrRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02280PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	517.301736	1032.58892	0.34597	0.00017897	-4.3078	-0.0022284	-3.9618	-0.0020495	517.2994697498979	118.26	1.5873	117.23	116.89	118.47	-1.0324	-0.010464	-0.0015602	NaN	79.713	65	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163090			59211	36012	48828	48874							0.07392724545229612
VEKPAETHL	9	Unmodified	_VEKPAETHL_					0	0	0		nc|ENSG00000198171|Q96HY6-2|DDRGK1;ENSG00000198171|ENST00000354488|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	MULTI-MSMS	OvCa9_classI_Rep2	2	512.276611328125	2	512.277106	1022.53966	-0.24147	-0.0001237	0.13914	7.1279E-05	-0.10232	-5.2418E-05	512.2769230549994	45.935	1.1952	43.225	42.947	44.142	-2.7097					43	23	3	0	0	0	0.29519	2	2706	2706;2710		63.534	8.7575	1	204710			59212	15255	48829	48875	64928;64929	64928					0.029291525806115715
VEKPAETHL	9	Unmodified	_VEKPAETHL_					0	0	0		nc|ENSG00000198171|Q96HY6-2|DDRGK1;ENSG00000198171|ENST00000354488|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	nc|ENSG00000198171|Q96HY6-2|DDRGK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.2767333984375	2	512.277106	1022.53966	-0.72136	-0.00036954	0.65403	0.00033504	-0.067335	-3.4494E-05	512.2771889104965	46.288	1.8452	43.215	42.771	44.616	-3.0724					64	35	2	0	0	0	0.064985	3	2408	2408;2419;2433		110.12	30.669	1	848700			59213	15255	48829	48875	64930;64931;64932	64930					0.029291525806115715
VEKPSPLTL	9	Unmodified	_VEKPSPLTL_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	OvCa9_classI_Rep2	2	492.29168701171875	2	492.292225	982.569897	0.6588	0.00032432	-0.65774	-0.0003238	0.0010603	5.22E-07	492.291809784017	83.004	2.1974	81.406	80.854	83.051	-1.5988					101	43	4	0	0	0	0.014964	7	7103	7079;7087;7092;7098;7103;7109;7115		153.04	35.575	1	1078600			59214	3919	48830	48876	64933;64934;64935;64936;64937;64938;64939	64937					0.07791511245807214
VEKPSPLTL	9	Unmodified	_VEKPSPLTL_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	OvCa9_classI_Rep3	3	492.2931823730469	2	492.292225	982.569897	-1.283	-0.00063162	0.94513	0.00046528	-0.33789	-0.00016634	492.29261306996517	83.445	2.3277	81.184	80.766	83.094	-2.261					111	48	4	0	0	0	0.012051	6	4761	4761;4765;4771;4779;4785;4791		162.25	45.349	1	2426500			59215	3919	48830	48876	64940;64941;64942;64943;64944;64945	64940					0.07791511245807214
VEKPSPLTL	9	Unmodified	_VEKPSPLTL_					0	0	0		ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	ENSG00000129083|ENST00000439561|COPB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.2929382324219	2	492.292225	982.569897	0.75239	0.00037039	-0.56752	-0.00027939	0.18487	9.1008E-05	492.29184067576455	84.001	1.6711	81.338	81.022	82.693	-2.6629					83	34	4	0	0	0	0.0086488	4	7003	6993;7003;7015;7027		176.09	47.386	1	1979900			59216	3919	48830	48876	64946;64947;64948;64949	64947					0.07791511245807214
VEKPVGVAA	9	Unmodified	_VEKPVGVAA_					0	0	0		GSE1|p.S1070Gfs*49|1|0.1|ENSG00000131149|chr16:85668211-85668268|CTGCAGTCCTCCAGCCGCGCCCCTCCACCCCAGCACAATGGGCAGCAGGAGCCCCCCA/-|frameshift_variant;GSE1|p.I1065Ffs*73|1|0.28|ENSG00000131149|chr16:85668202-85668202|A/-|frameshift_variant;ENST00000562659.1_1_16:85698640-85699994:+|nuORF;nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1	GSE1|p.S1070Gfs*49|1|0.1|ENSG00000131149|chr16:85668211-85668268|CTGCAGTCCTCCAGCCGCGCCCCTCCACCCCAGCACAATGGGCAGCAGGAGCCCCCCA/-|frameshift_variant	GSE1|p.S1070Gfs*49|1|0.1|ENSG00000131149|chr16:85668211-85668268|CTGCAGTCCTCCAGCCGCGCCCCTCCACCCCAGCACAATGGGCAGCAGGAGCCCCCCA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	435.2594299316406	2	435.258185	868.501818	-0.25326	-0.00011023	0.49423	0.00021512	0.24097	0.00010488	435.25828083554745	53.122	1.2646	49.914	49.651	50.915	-3.208					73	24	5	0	0	0	0.16562	3	3215	3215;3225;3237		82.241	21.269	1	754620			59217	14354	48831	48877	64950;64951;64952	64950					0.06230686385811168
VEKPVGVAA	9	Unmodified	_VEKPVGVAA_					0	0	0		GSE1|p.S1070Gfs*49|1|0.1|ENSG00000131149|chr16:85668211-85668268|CTGCAGTCCTCCAGCCGCGCCCCTCCACCCCAGCACAATGGGCAGCAGGAGCCCCCCA/-|frameshift_variant;GSE1|p.I1065Ffs*73|1|0.28|ENSG00000131149|chr16:85668202-85668202|A/-|frameshift_variant;ENST00000562659.1_1_16:85698640-85699994:+|nuORF;nc|ENSG00000131149|Q14687-2|GSE1;nc|ENSG00000131149|Q14687-3|GSE1;ENSG00000131149|ENST00000253458|GSE1	GSE1|p.S1070Gfs*49|1|0.1|ENSG00000131149|chr16:85668211-85668268|CTGCAGTCCTCCAGCCGCGCCCCTCCACCCCAGCACAATGGGCAGCAGGAGCCCCCCA/-|frameshift_variant	GSE1|p.S1070Gfs*49|1|0.1|ENSG00000131149|chr16:85668211-85668268|CTGCAGTCCTCCAGCCGCGCCCCTCCACCCCAGCACAATGGGCAGCAGGAGCCCCCCA/-|frameshift_variant	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	435.258185	868.501818	-0.83065	-0.00036155	3.1909	0.0013889	2.3603	0.0010273	435.2599214188876	52.924	0.98755	50.11	49.788	50.776	-2.8139	0.097889	0.0022424	NaN	82.241	45	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142060			59218	14354	48831	48877							0.06230686385811168
VEKPVSSIL	9	Unmodified	_VEKPVSSIL_					0	0	0		nc|ENSG00000196405|Q9UI08-4|EVL;nc|ENSG00000196405|Q9UI08-3|EVL;nc|ENSG00000196405|Q9UI08-5|EVL;nc|ENSG00000196405|Q9UI08|EVL;ENSG00000196405|ENST00000392920|EVL;ENST00000553694.5_1_14:100603907-100610072:+|nuORF	nc|ENSG00000196405|Q9UI08-4|EVL	nc|ENSG00000196405|Q9UI08-4|EVL	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.292724609375	2	486.292225	970.569897	-0.66971	-0.00032568	0.52562	0.00025561	-0.14409	-7.0069E-05	486.29220881915757	82.112	0.77226	79.429	79.109	79.881	-2.6829					33	15	3	0	0	0	0.22621	1	6785	6785		71.877	3.0906	1	483200			59219	8601	48832	48878	64953	64953					0.08343511245811897
VEKQPPQVL	9	Unmodified	_VEKQPPQVL_					0	0	0		ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6	ENSG00000166888|ENST00000300134|STAT6	ENSG00000166888|ENST00000300134|STAT6	MULTI-MSMS	OvCa9_classI_Rep2	2	519.3026123046875	2	519.303124	1036.5917	1.3724	0.00071271	-1.9233	-0.00099875	-0.55081	-0.00028604	519.3019918582057	65.742	1.8958	63.047	62.417	64.313	-2.6958					88	37	3	0	0	0	0.22621	1	5083	5083		71.877	18.526	1	486100			59220	6730	48833	48879	64954	64954					0.07486315994378856
VEKQPPQVL	9	Unmodified	_VEKQPPQVL_					0	0	0		ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6	ENSG00000166888|ENST00000300134|STAT6	ENSG00000166888|ENST00000300134|STAT6	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.3033447265625	2	519.303124	1036.5917	-0.85734	-0.00044522	0.3365	0.00017475	-0.52083	-0.00027047	519.3031891777122	66.368	2.5447	62.878	62.029	64.574	-3.4902					126	51	4	0	0	0	0.024645	7	4849	4805;4815;4825;4837;4849;4861;4876		141.52	52.104	1	2167400			59221	6730	48833	48879	64955;64956;64957;64958;64959;64960;64961	64959					0.07486315994378856
VEKSKVKQP	9	Unmodified	_VEKSKVKQP_					0	0	0			REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.8146362304688	2	521.816399	1041.61824	-0.050483	-2.6343E-05	-0.070159	-3.661E-05	-0.12064	-6.2953E-05	521.8161194968234	111.82	1.7882	110.31	110	111.79	-1.5111					76	34	4	0	0	0	0.2422	1	10329	10329		69.628	1.1429	1	478680	+		59222	19085	48834	48880	64962	64962					0.09910004885728085
VEKTIASK	8	Unmodified	_VEKTIASK_					0	0	0		tr|A0A553SJY9|A0A553SJY9_NIACIIsocitratedehydrogenase[NADP]OS=NialliacirculansOX=1397GN=CEQ21_17855PE=3SV=1	tr|A0A553SJY9|A0A553SJY9_NIACIIsocitratedehydrogenase[NADP]OS=NialliacirculansOX=1397GN=CEQ21_17855PE=3SV=1	tr|A0A553SJY9|A0A553SJY9_NIACIIsocitratedehydrogenase[NADP]OS=NialliacirculansOX=1397GN=CEQ21_17855PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	437.2753601074219	2	438.263468	874.512382	1.7194	0.00075355	-1.6166	-0.00070851	0.10277	4.5039E-05	438.26265014927577	66.907	1.2325	66.907	66.372	67.604	0					63	30	3	0	0	0	0.028476	1	6202	6202		16.473	0	1	3607700			59223	33555	48835	48881	64963	64963					0.07010669040232642
VEKVHFFL	8	Unmodified	_VEKVHFFL_					0	0	0			REV__nc|ENSG00000009307|O75534-2|CSDE1	REV__nc|ENSG00000009307|O75534-2|CSDE1	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.7872619628906	2	509.789653	1017.56475	-1.2446	-0.00063447	-3.0939	-0.0015773	-4.3385	-0.0022117	509.7880425312576	100.01	1.413	97.686	97.366	98.779	-2.3253					76	27	4	0	0	0	0.61758	1	8963	8963		60.294	6.9425	1	950250	+		59224	16463	48836	48882	64964	64964					0.056672521738505566
VEKVLTIDEL	10	Unmodified	_VEKVLTIDEL_					0	0	0			REV__tr|A0A553SJY0|A0A553SJY0_NIACIArgininosuccinatesynthaseOS=NialliacirculansOX=1397GN=argGPE=3SV=1	REV__tr|A0A553SJY0|A0A553SJY0_NIACIArgininosuccinatesynthaseOS=NialliacirculansOX=1397GN=argGPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.8358764648438	2	579.834454	1157.65436	-0.72254	-0.00041895	1.6155	0.00093673	0.89297	0.00051778	579.8352563131114	102.66	1.0986	100.46	100.2	101.3	-2.1994					51	20	4	0	0	0	0.6104	1	9252	9252		40.778	1.5253	1	176550	+		59225	30055	48837	48883	64965	64965					0.08183417271902726
VEKVPNPSL	9	Unmodified	_VEKVPNPSL_					0	0	0		ENST00000576679.1_2_17:79781125-79782334:-|nuORF;ENST00000575090.1_1_17:79781125-79781671:-|nuORF;ENSG00000225663|ENST00000455127|MCRIP1	ENST00000576679.1_2_17:79781125-79782334:-|nuORF	ENST00000576679.1_2_17:79781125-79782334:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	491.78253173828125	2	491.782025	981.549496	0.98088	0.00048238	-1.7176	-0.00084467	-0.73668	-0.00036229	491.78114912073016	70.818	1.968	68.248	67.663	69.631	-2.5707					94	37	4	0	0	0	0.030867	8	5688	5670;5675;5681;5688;5692;5701;5707;5713		134.77	38.95	1	1108700			59226	13950	48838	48884	64966;64967;64968;64969;64970;64971;64972;64973	64969					0.05798340585999995
VEKVPNPSL	9	Unmodified	_VEKVPNPSL_					0	0	0		ENST00000576679.1_2_17:79781125-79782334:-|nuORF;ENST00000575090.1_1_17:79781125-79781671:-|nuORF;ENSG00000225663|ENST00000455127|MCRIP1	ENST00000576679.1_2_17:79781125-79782334:-|nuORF	ENST00000576679.1_2_17:79781125-79782334:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	491.7829895019531	2	491.782025	981.549496	-0.75254	-0.00037009	-0.22326	-0.0001098	-0.97581	-0.00047988	491.7819265210721	71.75	2.1895	68.294	67.874	70.064	-3.4563					135	44	6	0	0	0	0.020196	8	5485	5461;5473;5485;5497;5509;5521;5534;5549		146.79	43.243	1	4865000			59227	13950	48838	48884	64974;64975;64976;64977;64978;64979;64980;64981	64976					0.05798340585999995
VEKVVLVSL	9	Unmodified	_VEKVVLVSL_					0	0	0		ENSG00000125730|ENST00000245907|C3;C3|p.Y686Cfs*19|1|0.14|ENSG00000125730|chr19:6707264-6707265|-/AC|frameshift_variant	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	OvCa99_classI_Rep5	1	493.319580078125	2	493.318243	984.621933	0.99329	0.00049001	0.37108	0.00018306	1.3644	0.00067307	493.3183162280539	103.18	1.3889	103.18	102.93	104.32	0					69	32	4	0	0	0	0.075618	1	11524	11524		104.01	13.644	1	7377100			59228	3725	48839	48885	64982	64982					0.12900674659567812
VEKVVLVSL	9	Unmodified	_VEKVVLVSL_					0	0	0		ENSG00000125730|ENST00000245907|C3;C3|p.Y686Cfs*19|1|0.14|ENSG00000125730|chr19:6707264-6707265|-/AC|frameshift_variant	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	OvCa9_classI_Rep2	2	493.3186340332031	2	493.318243	984.621933	-0.29859	-0.0001473	-0.49169	-0.00024256	-0.79028	-0.00038986	493.31794941561196	103.58	2.8206	103	102.39	105.21	-0.57639					183	56	5	0	0	0	0.023079	10	9567	9551;9555;9561;9567;9585;9598;9604;9610;9616;9629		143.37	24.301	1	4529700			59229	3725	48839	48885	64983;64984;64985;64986;64987;64988;64989;64990;64991;64992	64986					0.12900674659567812
VEKVVLVSL	9	Unmodified	_VEKVVLVSL_					0	0	0		ENSG00000125730|ENST00000245907|C3;C3|p.Y686Cfs*19|1|0.14|ENSG00000125730|chr19:6707264-6707265|-/AC|frameshift_variant	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	OvCa9_classI_Rep3	3	493.3178405761719	2	493.318243	984.621933	0.12487	6.16E-05	-1.0842	-0.00053487	-0.95935	-0.00047327	493.31767935049726	104.38	2.8555	102.94	102.55	105.41	-1.4347					178	54	5	0	0	0	0.023079	13	7258	7252;7258;7264;7270;7276;7282;7288;7294;7301;7308;7314;7320;7327		143.37	24.642	1	5582100			59230	3725	48839	48885	64993;64994;64995;64996;64997;64998;64999;65000;65001;65002;65003;65004;65005	64994					0.12900674659567812
VEKVVLVSL	9	Unmodified	_VEKVVLVSL_					0	0	0		ENSG00000125730|ENST00000245907|C3;C3|p.Y686Cfs*19|1|0.14|ENSG00000125730|chr19:6707264-6707265|-/AC|frameshift_variant	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.3179626464844	2	493.318243	984.621933	-0.045161	-2.2279E-05	-0.87216	-0.00043025	-0.91732	-0.00045253	493.3177637339079	105.04	2.7633	103.03	102.64	105.4	-2.0161					193	53	7	0	0	0	0.034473	4	9542	9506;9518;9542;9554		131.62	16.283	1	5257600			59231	3725	48839	48885	65006;65007;65008;65009	65008					0.12900674659567812
VEKYIEEQL	9	Unmodified	_VEKYIEEQL_					0	0	0		nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	MULTI-MSMS	OvCa99_classI_Rep5	1	575.8056030273438	2	575.803154	1149.59175	1.7767	0.001023	1.0369	0.00059704	2.8136	0.0016201	575.8036461528687	78.588	0.53605	78.588	78.374	78.911	0					40	12	4	0	0	0	0.094791	1	7987	7987		98.582	16.341	1	2604200			59232	2270	48840	48886	65010	65010					0.02294271203709286
VEKYIEEQL	9	Unmodified	_VEKYIEEQL_					0	0	0		nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	MULTI-MSMS	OvCa9_classI_Rep3	3	575.80419921875	2	575.803154	1149.59175	-0.83863	-0.00048288	0.2711	0.0001561	-0.56753	-0.00032678	575.8032304593291	80.583	2.3362	78.261	77.726	80.062	-2.3226					140	45	5	0	0	0	0.0020283	6	4424	4424;4428;4434;4441;4448;4454		232.83	88.947	1	1289200			59233	2270	48840	48886	65011;65012;65013;65014;65015;65016	65011					0.02294271203709286
VEKYIEEQL	9	Unmodified	_VEKYIEEQL_					0	0	0		nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8048706054688	2	575.803154	1149.59175	-1.2204	-0.00070272	0.6104	0.00035147	-0.61002	-0.00035125	575.8034119884476	80.935	1.9974	78.224	77.954	79.951	-2.7106					127	40	5	0	0	0	0.0073712	6	6632	6623;6632;6645;6657;6669;6683		191.45	67.369	1	1450400			59234	2270	48840	48886	65017;65018;65019;65020;65021;65022	65018					0.02294271203709286
VEKYIEEQL	9	Unmodified	_VEKYIEEQL_					0	0	0		nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	575.803154	1149.59175	-0.38772	-0.00022325	-0.43119	-0.00024828	-0.8189	-0.00047153	575.8027057153794	80.225	2.1059	78.53	77.923	80.029	-1.6951	0.12951	-0.00063139	NaN	232.83	136	41	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	440440			59235	2270	48840	48886							0.02294271203709286
VEKYIEEQLL	10	Unmodified	_VEKYIEEQLL_					0	0	0		nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP;ENSG00000102931|ENST00000219204|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	nc|ENSG00000102931|Q9Y2Y0-2|ARL2BP	MULTI-MSMS	OvCa9_classI_Rep3	3	632.3467407226562	2	632.345186	1262.67582	-0.43212	-0.00027325	-1.8425	-0.0011651	-2.2747	-0.0014384	632.3439392672452	100.58	1.7995	98.97	98.802	100.6	-1.6053					74	34	3	0	0	0	0.42298	1	6834	6834		65.157	5.2265	1	286850			59236	2270	48841	48887	65023	65023					0.05498802300621719
VELAVTVLKS	10	Unmodified	_VELAVTVLKS_					0	0	0		ENST00000357162.6_1_8:100589829-100654156:+|nuORF	ENST00000357162.6_1_8:100589829-100654156:+|nuORF	ENST00000357162.6_1_8:100589829-100654156:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	530.2825927734375	2	529.826432	1057.63831	-0.67062	-0.00035531	1.097	0.00058124	0.42642	0.00022593	529.8270324355816	90.342	1.3832	88.261	87.49	88.873	-2.0805					49	26	2	0	0	0	0.026994	1	5563	5563		25.574	6.2141	1	103340			59237	10714	48842	48888	65024	65024					0.11179755825651227
VELAVTVLKS	10	Unmodified	_VELAVTVLKS_					0	0	0		ENST00000357162.6_1_8:100589829-100654156:+|nuORF	ENST00000357162.6_1_8:100589829-100654156:+|nuORF	ENST00000357162.6_1_8:100589829-100654156:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	529.826432	1057.63831	-1.0244	-0.00054274	1.4427	0.00076438	0.41832	0.00022164	529.8270470942763	90.881	1.2225	88.306	88.007	89.23	-2.575	0.022393	0.00025236	NaN	30.318	31	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85696			59238	10714	48842	48888							0.11179755825651227
VELDDLGKDEL	11	Unmodified	_VELDDLGKDEL_					0	0	0		nc|ENSG00000143870|Q15084-3|PDIA6;ENSG00000143870|ENST00000272227|PDIA6;nc|ENSG00000143870|Q15084-4|PDIA6;nc|ENSG00000143870|Q15084-5|PDIA6;nc|ENSG00000143870|Q15084-2|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	MULTI-MSMS	OvCa99_classI_Rep5	1	623.3153076171875	2	623.314083	1244.61361	-2.1204	-0.0013217	-0.68149	-0.00042478	-2.8019	-0.0017464	623.3136651322908	103.79	1.3543	103.79	103.34	104.7	0					109	31	5	0	0	0	3.1395E-22	5	11614	11594;11614;11647;11650;11682		251.56	111.44	1	31777000			59239	5103	48843	48889	65025;65026;65027;65028;65029	65026					0.0010903116162808146
VELDDLGKDEL	11	Unmodified	_VELDDLGKDEL_					0	0	0		nc|ENSG00000143870|Q15084-3|PDIA6;ENSG00000143870|ENST00000272227|PDIA6;nc|ENSG00000143870|Q15084-4|PDIA6;nc|ENSG00000143870|Q15084-5|PDIA6;nc|ENSG00000143870|Q15084-2|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	MULTI-MSMS	OvCa9_classI_Rep2	2	623.3143310546875	2	623.314083	1244.61361	-1.2668	-0.00078959	0.90696	0.00056532	-0.35979	-0.00022426	623.314589325417	104.27	2.1322	103.69	103.23	105.36	-0.57639					122	42	5	0	0	0	2.145E-08	6	9648	9641;9648;9655;9660;9666;9673		205.59	80.821	1	644620			59240	5103	48843	48889	65030;65031;65032;65033;65034;65035	65031					0.0010903116162808146
VELDDLGKDEL	11	Unmodified	_VELDDLGKDEL_					0	0	0		nc|ENSG00000143870|Q15084-3|PDIA6;ENSG00000143870|ENST00000272227|PDIA6;nc|ENSG00000143870|Q15084-4|PDIA6;nc|ENSG00000143870|Q15084-5|PDIA6;nc|ENSG00000143870|Q15084-2|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	MULTI-MSMS	OvCa9_classI_Rep3	3	623.315185546875	2	623.314083	1244.61361	1.2132	0.00075622	-1.4127	-0.00088055	-0.19948	-0.00012434	623.3131166591115	104.85	1.9247	103.5	103.21	105.14	-1.3482					97	36	3	0	0	0	2.9455E-19	7	7345	7322;7326;7332;7338;7345;7351;7358		251.56	119.94	1	919520			59241	5103	48843	48889	65036;65037;65038;65039;65040;65041;65042	65040					0.0010903116162808146
VELDDLGKDEL	11	Unmodified	_VELDDLGKDEL_					0	0	0		nc|ENSG00000143870|Q15084-3|PDIA6;ENSG00000143870|ENST00000272227|PDIA6;nc|ENSG00000143870|Q15084-4|PDIA6;nc|ENSG00000143870|Q15084-5|PDIA6;nc|ENSG00000143870|Q15084-2|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	nc|ENSG00000143870|Q15084-3|PDIA6	MULTI-MSMS	OvCa9_classI_Rep4_	4	623.3131713867188	2	623.314083	1244.61361	-0.21144	-0.00013179	-0.35303	-0.00022005	-0.56446	-0.00035184	623.3138286333433	105.49	2.5018	103.48	102.69	105.19	-2.0161					137	48	5	0	0	0	9.6993E-14	5	9578	9569;9578;9590;9603;9616		223.87	93.479	1	849820			59242	5103	48843	48889	65043;65044;65045;65046;65047	65044					0.0010903116162808146
VELEAKEVL	9	Unmodified	_VELEAKEVL_					0	0	0		nc|ENSG00000126777|Q86UP2-2|KTN1;nc|ENSG00000126777|Q86UP2-3|KTN1;nc|ENSG00000126777|Q86UP2-4|KTN1;ENSG00000126777|ENST00000395314|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	nc|ENSG00000126777|Q86UP2-2|KTN1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.2969970703125	2	515.294965	1028.57538	2.3087	0.0011897	-0.10494	-5.4075E-05	2.2038	0.0011356	515.294767034523	86.72	0.86416	86.72	86.271	87.135	0					27	14	3	0	0	0	0.040625	1	9163	9163		126.24	7.4995	1	2458200			59243	3800	48844	48890	65048	65048					0.06223190037621862
VELEKRQL	8	Unmodified	_VELEKRQL_					0	0	0		ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	ENSG00000134318|ENST00000315872|ROCK2	MULTI-MSMS	OvCa99_classI_Rep5	1	507.8012390136719	2	507.800749	1013.58694	0.20586	0.00010454	-0.30898	-0.0001569	-0.10312	-5.2364E-05	507.80047337946723	45.176	0.86861	45.176	44.886	45.754	0					43	19	4	0	0	0	0.50674	1	3102	3102		76.847	0	1	2052100			59244	4281	48845	48891	65049	65049					0.08069431851606623
VELEMKELL	9	Unmodified	_VELEMKELL_					0	0	0			REV__nc|ENSG00000173230|Q14789|GOLGB1	REV__nc|ENSG00000173230|Q14789|GOLGB1	MULTI-MSMS	OvCa9_classI_Rep2	2	552.3026123046875	2	552.304475	1102.5944	-0.39855	-0.00022012	-3.6228	-0.0020009	-4.0213	-0.002221	552.3024243356685	101.75	4.8536	100.98	100.62	105.47	-0.76401					212	97	3	0	0	0	0.022645	4	9383	9383;9395;9407;9426		143.89	5.0612	1	3368600	+		59245	21758	48846	48892	65050;65051;65052;65053	65050					0.047204033370235265
VELEMKELL	9	Unmodified	_VELEMKELL_					0	0	0			REV__nc|ENSG00000173230|Q14789|GOLGB1	REV__nc|ENSG00000173230|Q14789|GOLGB1	MULTI-MSMS	OvCa9_classI_Rep3	3	552.3032836914062	2	552.304475	1102.5944	-0.82911	-0.00045792	-3.1764	-0.0017544	-4.0056	-0.0022123	552.3026423287465	102.49	3.7537	100.97	100.53	104.28	-1.5211					161	71	3	0	0	0	0.013607	1	7060	7060		157.33	4.2932	1	4641500	+		59246	21758	48846	48892	65054	65054					0.047204033370235265
VELERQNP	8	Unmodified	_VELERQNP_					0	0	0			REV__ENSG00000155875|ENST00000380534|SAXO1	REV__ENSG00000155875|ENST00000380534|SAXO1	MULTI-MSMS	OvCa99_classI_Rep5	1	492.7601318359375	2	492.759081	983.503609	-0.2255	-0.00011112	0.26419	0.00013018	0.038691	1.9065E-05	492.7590050675706	64.52	0.66277	64.52	64.253	64.916	0					31	15	3	0	0	0	0.60331	1	5876	5876		63.306	1.1989	1	930450	+		59247	20445	48847	48893	65055	65055					0.011196954037586693
VELEVIIQRL	10	Unmodified	_VELEVIIQRL_					0	0	0		ENSG00000100314|ENST00000216144|CABP7	ENSG00000100314|ENST00000216144|CABP7	ENSG00000100314|ENST00000216144|CABP7	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.368896484375	2	606.371538	1210.72852	-0.26856	-0.00016285	-2.8049	-0.0017008	-3.0734	-0.0018636	606.369699493104	145.24	3.8933	143.8	141.64	145.53	-1.4357					226	74	4	0	0	0	0.80581	1	14165	14165		18.262	0	1	336140			59248	2044	48848	48894	65056	65056					0.13158805154080255
VELGNNQDRPL	11	Unmodified	_VELGNNQDRPL_					0	0	0			REV__KIDINS220|p.H1622Qfs*20|1|0.07|ENSG00000134313|chr2:8731170-8731171|-/CACTTTGTTGGCAATTTTTAAAGCCC|frameshift_variant	REV__KIDINS220|p.H1622Qfs*20|1|0.07|ENSG00000134313|chr2:8731170-8731171|-/CACTTTGTTGGCAATTTTTAAAGCCC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	627.8252563476562	2	627.825483	1253.63641	1.5608	0.00097993	-3.0227	-0.0018977	-1.4619	-0.00091779	627.8235614037209	109.17	0.65861	109.17	108.85	109.5	0					23	14	2	0	0	0	0.27255	1	12366	12366		70.816	2.0294	1	648250	+		59249	19193	48849	48895	65057	65057					0.019740950697496373
VELGVEKALGI	11	Unmodified	_VELGVEKALGI_					0	0	0		tr|A0A553SH31|A0A553SH31_NIACIIsoleucine--tRNAligaseOS=NialliacirculansOX=1397GN=ileSPE=3SV=1	tr|A0A553SH31|A0A553SH31_NIACIIsoleucine--tRNAligaseOS=NialliacirculansOX=1397GN=ileSPE=3SV=1	tr|A0A553SH31|A0A553SH31_NIACIIsoleucine--tRNAligaseOS=NialliacirculansOX=1397GN=ileSPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	564.3375854492188	2	564.337164	1126.65977	2.9845	0.0016843	-2.1796E-05	-1.2301E-08	2.9845	0.0016843	564.33702469029	94.363	0.59621	94.363	94.136	94.732	0					32	13	3	0	0	0	0.36853	1	10256	10256		63.426	1.7352	1	1225500			59250	33230	48850	48896	65058	65058					0.10151140854372898
VELILIQVF	9	Unmodified	_VELILIQVF_					0	0	0			REV__nc|ENSG00000274150|A8MWK0|FADS2B	REV__nc|ENSG00000274150|A8MWK0|FADS2B	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.302734375	2	537.333893	1072.65323	-1.9658	-0.0010563	-2.118	-0.0011381	-4.0839	-0.0021944	537.3326349381869	50.552	1.4375	47.758	47.281	48.719	-2.794					71	28	3	0	0	0	0.027462	1	3355	3355		33.516	0	1	137920	+		59251	29192	48851	48897	65059	65059					0.11981247693665864
VELITNILT	9	Unmodified	_VELITNILT_					0	0	0			REV__ENSG00000115423|ENST00000389394|DNAH6	REV__ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.30743408203125	2	508.305332	1014.59611	3.1906	0.0016218	2.5445	0.0012934	5.7351	0.0029152	508.8084197658581	102.49	0.63931	102.49	102.12	102.76	0					20	14	2	0	0	0	0.027462	1	11428	11428		37.159	1.5408	1	287990	+		59252	18244	48852	48898	65060	65060					0.08939780417267684
VELIVNKTE	9	Unmodified	_VELIVNKTE_					0	0	0			REV__DIAPH1|p.I874T|1|0.1|ENSG00000131504|chr5:141529658-141529658|A/G|missense_variant	REV__DIAPH1|p.I874T|1|0.1|ENSG00000131504|chr5:141529658-141529658|A/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.80126953125	2	522.800414	1043.58628	-0.5616	-0.00029361	1.4792	0.00077333	0.9176	0.00047972	522.8011306629728	21.387	1.7669	20.049	19.77	21.537	-1.3386					100	36	4	0	0	0	0.50149	1	237	237		42.396	0	1	978010	+		59253	16299	48853	48899	65061	65061					0.06622592411895312
VELIVRVVL	9	Unmodified	_VELIVRVVL_					0	0	0			REV__ENST00000310078.12_1_2:228395842-228398285:+|nuORF	REV__ENST00000310078.12_1_2:228395842-228398285:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	520.346923828125	2	520.347335	1038.68012	2.9948	0.0015583	-3.7019	-0.0019263	-0.70713	-0.00036795	520.3453507640438	130.94	2.3528	129.46	129.06	131.41	-1.4779					149	47	5	0	0	0	0.51865	1	12717	12717		40.778	17.736	1	2675200	+		59254	24334	48854	48900	65062	65062					0.1623235630486306
VELKEMEIL	9	Unmodified	_VELKEMEIL_					0	0	0			REV__ENST00000442250.5_1_2:173339673-173339736:+|nuORF	REV__ENST00000442250.5_1_2:173339673-173339736:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	552.3029174804688	2	552.304475	1102.5944	-0.82911	-0.00045792	-3.1764	-0.0017544	-4.0056	-0.0022123	552.3026423287465	102.49	3.7537	100.97	100.53	104.28	-1.5211					161	71	3	0	0	0	0.083631	1	7141	7141		101.6	8.4052	1	4641500	+		59255	25851	48855	48901	65063	65063					0.047204033370235265
VELKLFVD	8	Unmodified	_VELKLFVD_					0	0	0			REV__nc|ENSG00000154265|Q8WWZ7-3|ABCA5	REV__nc|ENSG00000154265|Q8WWZ7-3|ABCA5	MULTI-SECPEP	OvCa9_classI_Rep2	2	481.29559326171875	2	481.781493	961.548434	0.60438	0.00029118	-1.2927	-0.00062279	-0.68831	-0.00033161	481.77924438810675	91.873	0.78941	90.637	90.167	90.956	-1.2355					17	14	2	0	0	0	0.028476	1	8191	8191		25.45	0	1	9447.5	+		59256	20374	48856	48902	65064	65064					0.06612126217078185
VELKLPKIQ	9	Unmodified	_VELKLPKIQ_					0	0	0			REV__ENSG00000025796|ENST00000369002|SEC63	REV__ENSG00000025796|ENST00000369002|SEC63	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.8106689453125	2	534.344792	1066.67503	-0.036253	-1.9372E-05	-0.571	-0.00030511	-0.60726	-0.00032448	534.3443980232996	91.732	0.78924	90.497	90.219	91.009	-1.2355					25	14	3	0	0	0	0.027462	1	8134	8134		35.618	5.3006	1	49201	+		59257	16569	48857	48903	65065	65065					0.1443605244221544
VELKQRIF	8	Unmodified	_VELKQRIF_					0	0	0			REV__nc|ENSG00000149201|Q6ZN84-2|CCDC81	REV__nc|ENSG00000149201|Q6ZN84-2|CCDC81	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.8029174804688	2	516.813659	1031.61277	0.39713	0.00020524	-0.9238	-0.00047743	-0.52667	-0.00027219	516.8131565450773	109.89	0.94862	108.29	107.96	108.91	-1.6011					40	17	3	0	0	0	0.028476	1	10109	10109		26.796	4.8362	1	166200	+		59258	20147	48858	48904	65066	65066					0.09822326093899392
VELLAILRL	9	Unmodified	_VELLAILRL_					0	0	0			REV__nc|ENSG00000136068|O75369-8|FLNB;REV__nc|ENSG00000196924|P21333-2|FLNA;REV__FLNC|p.I2110Tfs*16|1|0.33|ENSG00000128591|chr7:128853588-128853591|ATCA/-|frameshift_variant	REV__nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3462524414062	2	520.347335	1038.68012	1.3364	0.00069541	-1.6775	-0.00087287	-0.34103	-0.00017745	520.346442572037	129.27	2.7244	129.04	128.62	131.35	-0.22697					153	54	5	0	0	0	0.55588	1	12767	12767		37.159	0	1	2451300	+		59259	22875;19356;18860	48859	48905	65067	65067					0.16232356304840323
VELLARKI	8	Unmodified	_VELLARKI_					0	0	0		ENST00000498600.2_1_1:170508481-170511691:+|nuORF	ENST00000498600.2_1_1:170508481-170511691:+|nuORF	ENST00000498600.2_1_1:170508481-170511691:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.7576599121094	2	471.310752	940.606951	2.0863	0.00098331	-0.065942	-3.1079E-05	2.0204	0.00095223	471.3107260371945	77.552	0.80066	77.552	77.252	78.053	0					29	18	2	0	0	0	0.028476	1	7876	7876		85.359	27.548	1	897490			59260	12827	48860	48906	65068	65068					0.13427227582224077
VELLEDNLL	9	Unmodified	_VELLEDNLL_					0	0	0			REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.3579652635712427|0.3175433071941228|2.1|429.0|27|2|sense	REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.3579652635712427|0.3175433071941228|2.1|429.0|27|2|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.7772216796875	2	529.292422	1056.57029	-0.67899	-0.00035938	1.7918	0.00094837	1.1128	0.00058899	529.2931088480909	93.666	0.62824	92.567	92.225	92.853	-1.0995					16	11	2	0	0	0	0.027448	1	8370	8370		35.618	0	1	12023	+		59261	28428	48861	48907	65069	65069					0.0442688617499698
VELLLPRKL	9	Unmodified	_VELLLPRKL_					0	0	0		ENST00000460343.5_1_3:53260493-53260973:-|nuORF	ENST00000460343.5_1_3:53260493-53260973:-|nuORF	ENST00000460343.5_1_3:53260493-53260973:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.8310546875	2	540.860609	1079.70667	2.0352	0.0011008	-1.1582	-0.00062642	0.87703	0.00047435	540.8595553978624	124.56	0.3654	123.51	123.43	123.79	-1.0519					10	6	2	0	0	0	0.027462	1	9652	9652		27.882	0	1	24548			59262	12150	48862	48908	65070	65070					0.17000045196186875
VELLRIPSY	9	Unmodified	_VELLRIPSY_					0	0	0			REV__ENSG00000115020|ENST00000264380|PIKFYVE	REV__ENSG00000115020|ENST00000264380|PIKFYVE	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3177490234375	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.70177	1	14391	14391		17.365	0.89182	1	202430	+		59263	18214	48863	48909	65071	65071					0.08222889028479585
VELLRMSVD	9	Unmodified	_VELLRMSVD_					0	0	0		ENSG00000185818|ENST00000423729|NAT8L	ENSG00000185818|ENST00000423729|NAT8L	ENSG00000185818|ENST00000423729|NAT8L	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.830322265625	2	531.286617	1060.55868	1.4026	0.00074518	-3.0887	-0.001641	-1.6861	-0.00089581	531.2847973284578	111.29	0.4023	111.29	111.11	111.51	0					12	8	2	0	0	0	0.027461	1	12641	12641		32.812	6.1195	1	95424			59264	8287	48864	48910	65072	65072					0.030823658800272824
VELNKKAKFT	10	Unmodified	_VELNKKAKFT_					0	0	0			REV__ENSG00000185149|ENST00000329476|NPY2R	REV__ENSG00000185149|ENST00000329476|NPY2R	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3509521484375	2	589.350606	1176.68666	0.83977	0.00049492	-1.4765	-0.00087016	-0.6367	-0.00037524	589.3496588808903	87.347	1.5748	85.916	85.593	87.168	-1.4311					104	31	5	0	0	0	0.42962	1	7651	7651		64.207	9.431	1	1092400	+		59265	22483	48865	48911	65073	65073					0.10538249465548688
VELPELPRL	9	Unmodified	_VELPELPRL_					0	0	0		ENSG00000073614|ENST00000399788|KDM5A;nc|ENSG00000073614|P29375-2|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	ENSG00000073614|ENST00000399788|KDM5A	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.3190307617188	2	533.318774	1064.623	-0.80981	-0.00043189	0.31819	0.00016969	-0.49162	-0.00026219	533.3187898534811	123.14	1.0894	121.77	121.46	122.55	-1.3666					47	21	3	0	0	0	0.35694	1	11655	11655		56.434	5.2411	1	110230			59266	1495	48866	48912	65074	65074					0.09326889028466212
VELQKIANLG	10	Unmodified	_VELQKIANLG_					0	0	0			REV__tr|A0A7D6ZSZ2|A0A7D6ZSZ2_9CLOTYhcH/YjgK/YiaLfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17970PE=4SV=1	REV__tr|A0A7D6ZSZ2|A0A7D6ZSZ2_9CLOTYhcH/YjgK/YiaLfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17970PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.301513671875	2	542.821681	1083.62881	-0.39804	-0.00021607	-0.66911	-0.0003632	-1.0671	-0.00057927	542.8215423170135	83.737	0.76591	81.074	80.828	81.594	-2.6629					22	15	2	0	0	0	0.027174	1	7005	7005		20.947	0	1	55835	+		59267	32197	48867	48913	65075	65075					0.09033987540124144
VELRPRIFPL	10	Unmodified	_VELRPRIFPL_					0	0	0			REV__ENST00000403681.6_2_12:66218097-66218241:+|nuORF	REV__ENST00000403681.6_2_12:66218097-66218241:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	413.9224853515625	3	413.923919	1238.74993	0.26902	0.00011136	-3.5639	-0.0014752	-3.2948	-0.0013638	413.9224547119415	58.292	1.633	55.5	55.122	56.755	-2.792					103	31	5	0	0	0	0.52439	1	4225	4225		51.193	13.685	1	599060	+		59268	25429	48868	48914	65076	65076					0.1401023497346614
VELRTTVAHCI	11	Unmodified	_VELRTTVAHCI_					0	0	0		nc|ENSG00000137802|O60336-2|MAPKBP1;ENSG00000137802|ENST00000457542|MAPKBP1;ENST00000505061.5_1_15:42105116-42107966:+|nuORF	nc|ENSG00000137802|O60336-2|MAPKBP1;ENST00000505061.5_1_15:42105116-42107966:+|nuORF	nc|ENSG00000137802|O60336-2|MAPKBP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	621.8165893554688	2	621.337172	1240.65979	0.094922	5.8979E-05	-2.7978	-0.0017384	-2.7029	-0.0016794	621.336602886315	63.543	0.11462	63.543	63.455	63.57	0					4	2	2	0	0	0	0.025638	1	5724	5724		37.812	8.6415	1	101370			59269	4616;12886	48869	48915	65077	65077					0.049088175827364466
VELRVCHLLLA	11	Unmodified	_VELRVCHLLLA_					0	0	0		ENST00000524965.5_1_8:145540219-145541001:-|nuORF	ENST00000524965.5_1_8:145540219-145541001:-|nuORF	ENST00000524965.5_1_8:145540219-145541001:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	633.36865234375	2	633.373558	1264.73256	-4.5141	-0.0028591	-2.3979	-0.0015187	-6.912	-0.0043779	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.72473	1	15535	15535		19.104	0	1	369460			59270	13175	48870	48916	65078	65078					0.11078571376151558
VELRVLPM	8	Unmodified	_VELRVLPM_					0	0	0			REV__ENST00000461241.1_1_22:31523357-31529733:+|nuORF	REV__ENST00000461241.1_1_22:31523357-31529733:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	478.78240966796875	2	478.783513	955.552473	-2.3081	-0.0011051	-1.9297	-0.00092392	-4.2378	-0.002029	478.7820510150217	104.19	0.7263	104.19	103.85	104.58	0					38	16	3	0	0	0	0.23117	1	11663	11663		119.56	0.33563	1	783820	+		59271	22482	48871	48917	65079	65079					0.07291892439161529
VELSHRYI	8	Unmodified	_VELSHRYI_					0	0	0		tr|A0A553SPH4|A0A553SPH4_NIACIATP-dependentClpproteaseATP-bindingsubunitOS=NialliacirculansOX=1397GN=CEQ21_26375PE=3SV=1	tr|A0A553SPH4|A0A553SPH4_NIACIATP-dependentClpproteaseATP-bindingsubunitOS=NialliacirculansOX=1397GN=CEQ21_26375PE=3SV=1	tr|A0A553SPH4|A0A553SPH4_NIACIATP-dependentClpproteaseATP-bindingsubunitOS=NialliacirculansOX=1397GN=CEQ21_26375PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.749755859375	2	508.779816	1015.54508	-0.12295	-6.2554E-05	-2.1239	-0.0010806	-2.2468	-0.0011431	509.27951238060206	43.053	0.72898	43.053	42.624	43.353	0					27	16	2	0	0	0	0.028476	1	2827	2827		73.975	22.639	1	474090			59272	34045	48872	48918	65080	65080					0.03792876163083747
VELSKLLQ	8	Unmodified	_VELSKLLQ_					0	0	0		nc|ENSG00000079156|Q9BZF3-3|OSBPL6;nc|ENSG00000079156|Q9BZF3-5|OSBPL6;nc|ENSG00000079156|Q9BZF3-2|OSBPL6;nc|ENSG00000079156|Q9BZF3-4|OSBPL6;ENSG00000079156|ENST00000190611|OSBPL6;nc|ENSG00000079156|Q9BZF3-6|OSBPL6;OSBPL6|p.E654Vfs*11|1|0.05|ENSG00000079156|chr2:178384123-178384124|-/TCTCATACTCCTTAGAGGTTGA|frameshift_variant	nc|ENSG00000079156|Q9BZF3-3|OSBPL6	nc|ENSG00000079156|Q9BZF3-3|OSBPL6	MULTI-MSMS	OvCa9_classI_Rep3	3	465.28570556640625	2	465.286943	928.559333	1.3406	0.00062376	-2.0993	-0.00097679	-0.75874	-0.00035303	465.28596646402366	125.96	2.9835	124.9	124.53	127.51	-1.0519					156	57	5	0	0	0	0.59904	1	9938	9938		64.207	0	1	4345900			59273	14896	48873	48919	65081	65081					0.09219528591370363
VELSRWLL	8	Unmodified	_VELSRWLL_					0	0	0			REV__ENST00000264649.10_1_17:40610912-40612943:+|nuORF	REV__ENST00000264649.10_1_17:40610912-40612943:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	508.302978515625	2	508.300384	1014.58622	-1.2021	-0.00061101	3.5757	0.0018175	2.3737	0.0012065	508.30219341276	91.129	3.5554	89.105	88.52	92.076	-2.0241					114	71	2	0	0	0	0.50747	1	5670	5670		76.774	2.5191	1	1119200	+		59274	24019	48874	48920	65082	65082					0.07950637202554844
VELTLRKC	8	Unmodified	_VELTLRKC_					0	0	0			REV__nc|ENSG00000170364|Q53H47-2|SETMAR	REV__nc|ENSG00000170364|Q53H47-2|SETMAR	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.298095703125	2	481.278595	960.542637	2.9069	0.001399	-3.6185	-0.0017415	-0.71169	-0.00034252	481.2767845478725	87.849	0.66996	87.849	87.628	88.298	0					26	15	2	0	0	0	0.028476	1	9300	9300		38.806	0	1	338880	+		59275	29000	48875	48921	65083	65083					0.06078704433764415
VELTLRKC	8	Unmodified	_VELTLRKC_					0	0	0			REV__nc|ENSG00000170364|Q53H47-2|SETMAR	REV__nc|ENSG00000170364|Q53H47-2|SETMAR	MULTI-MATCH	OvCa9_classI_Rep2	2		2	481.278595	960.542637	1.5069	0.00072523	-4.9741	-0.0023939	-3.4672	-0.0016687	481.2760469006613	89.29	0.64284	87.922	87.675	88.318	-1.3676	0.054593	-0.0010795	NaN	30.504	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17255	+		59276	29000	48875	48921							0.06078704433764415
VELTLRKC	8	Unmodified	_VELTLRKC_					0	0	0			REV__nc|ENSG00000170364|Q53H47-2|SETMAR	REV__nc|ENSG00000170364|Q53H47-2|SETMAR	MULTI-MATCH	OvCa9_classI_Rep3	3		2	481.278595	960.542637	-0.40928	-0.00019698	-3.0548	-0.0014702	-3.4641	-0.0016672	481.27710624920695	89.971	0.87162	87.891	87.439	88.31	-2.0805	0.023224	0.00076792	NaN	30.504	23	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38276	+		59277	29000	48875	48921							0.06078704433764415
VELTLRKC	8	Unmodified	_VELTLRKC_					0	0	0			REV__nc|ENSG00000170364|Q53H47-2|SETMAR	REV__nc|ENSG00000170364|Q53H47-2|SETMAR	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	481.278595	960.542637	0.11541	5.5542E-05	-3.9241	-0.0018886	-3.8087	-0.001833	481.2766204682156	90.383	0.61139	87.808	87.6	88.212	-2.575	-0.059566	-6.883E-05	NaN	30.504	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27333	+		59278	29000	48875	48921							0.06078704433764415
VELTMSKAGLR	11	Unmodified	_VELTMSKAGLR_					0	0	0			REV__tr|A0A553SGT5|A0A553SGT5_NIACI[RibosomalproteinbS18]-alanineN-acetyltransferaseOS=NialliacirculansOX=1397GN=rimIPE=3SV=1	REV__tr|A0A553SGT5|A0A553SGT5_NIACI[RibosomalproteinbS18]-alanineN-acetyltransferaseOS=NialliacirculansOX=1397GN=rimIPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	402.2303161621094	3	402.228791	1203.66454	1.0484	0.00042169	3.4881	0.001403	4.5365	0.0018247	402.2302216852369	23.79	0.28895	23.79	23.597	23.886	0					10	5	3	0	0	0	0.72069	1	372	372		22.562	4.0305	1	30897	+		59279	29735	48876	48922	65084	65084					0.07085701725486615
VELVAPPT	8	Unmodified	_VELVAPPT_					0	0	0			REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	MSMS	OvCa99_classI_Rep5	1	413.24169921875	2	413.239461	824.46437	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.6	1	133.6	133.1	134.1	0								0	0	0	0.30129	1	15540	15540		62.978	21.77	1		+		59280	17136	48877	48923	65085	65085					0.04511595120175116
VELVSLLKN	9	Unmodified	_VELVSLLKN_					0	0	0		tr|A0A553ST43|A0A553ST43_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_04320PE=4SV=1	tr|A0A553ST43|A0A553ST43_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_04320PE=4SV=1	tr|A0A553ST43|A0A553ST43_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_04320PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.2742919921875	2	507.813325	1013.6121	-0.32027	-0.00016264	0.52783	0.00026804	0.20756	0.0001054	507.8134660031615	108.4	0.67242	107.2	106.69	107.36	-1.1978					18	12	2	0	0	0	0.027462	1	7705	7705		35.618	0	1	29656			59281	34453	48878	48924	65086	65086					0.10583486654184071
VELYILFII	9	Unmodified	_VELYILFII_					0	0	0		tr|A0A553STV2|A0A553STV2_NIACIDamage-inducibleproteinCinAOS=NialliacirculansOX=1397GN=CEQ21_05675PE=4SV=1	tr|A0A553STV2|A0A553STV2_NIACIDamage-inducibleproteinCinAOS=NialliacirculansOX=1397GN=CEQ21_05675PE=4SV=1	tr|A0A553STV2|A0A553STV2_NIACIDamage-inducibleproteinCinAOS=NialliacirculansOX=1397GN=CEQ21_05675PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	561.8475952148438	2	561.844093	1121.67363	1.4749	0.00082867	3.1944	0.0017948	4.6693	0.0026234	561.845750192742	157.32	1.5158	157.32	156.95	158.46	0					97	30	5	0	0	0	0.59983	1	18482	18482		31.955	5.2619	1	1429200			59282	34539	48879	48925	65087	65087					0.11766418353477093
VEMCIGCA	8	Unmodified	_VEMCIGCA_					0	0	0			REV__MKRN3|p.V310A|1|0.13|ENSG00000179455|chr15:23566711-23566711|T/C|missense_variant	REV__MKRN3|p.V310A|1|0.13|ENSG00000179455|chr15:23566711-23566711|T/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.70391845703125	2	413.16881	824.323067	0.82101	0.00033922	0.94944	0.00039228	1.7705	0.0007315	413.169097944298	33.099	0.39407	33.099	32.941	33.335	0					12	7	3	0	0	0	0.028476	1	1519	1519		46.766	2.2354	1	31632	+		59283	28668	48880	48926	65088	65088					-0.09612185840603615
VEMDIVEKL	9	Unmodified	_VEMDIVEKL_					0	0	0		nc|ENSG00000075945|Q92845-4|KIFAP3;nc|ENSG00000075945|Q92845-2|KIFAP3;nc|ENSG00000075945|Q92845-3|KIFAP3;ENSG00000075945|ENST00000361580|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	nc|ENSG00000075945|Q92845-4|KIFAP3	MULTI-MSMS	OvCa99_classI_Rep5	1	538.2899169921875	2	538.288825	1074.5631	1.6587	0.00089286	0.13588	7.3144E-05	1.7946	0.000966	538.2888362744802	106.95	0.93164	106.95	106.67	107.6	0					34	21	2	0	0	0	0.027568	1	12059	12059		138.06	25.651	1	2454800			59284	1547	48881	48927	65089	65089					0.028798303029361705
VEMGLRIDEL	10	Unmodified	_VEMGLRIDEL_					0	0	0			REV__ENSG00000151461|ENST00000357604|UPF2	REV__ENSG00000151461|ENST00000357604|UPF2	MULTI-MSMS	OvCa99_classI_Rep5	1	587.8107299804688	2	587.810456	1173.60636	0.10021	5.8903E-05	-3.2298	-0.0018985	-3.1296	-0.0018396	587.8085026746925	57.589	1.0136	57.589	57.309	58.322	0					62	23	4	0	0	0	0.063542	2	4834	4834;4864		124.08	11.669	1	8108500	+		59285	20234	48882	48928	65090;65091	65090					0.026500200802047402
VENGGISKAH	10	Unmodified	_VENGGISKAH_					0	0	0		tr|A0A553SH44|A0A553SH44_NIACISqualene--hopenecyclaseOS=NialliacirculansOX=1397GN=CEQ21_12070PE=3SV=1	tr|A0A553SH44|A0A553SH44_NIACISqualene--hopenecyclaseOS=NialliacirculansOX=1397GN=CEQ21_12070PE=3SV=1	tr|A0A553SH44|A0A553SH44_NIACISqualene--hopenecyclaseOS=NialliacirculansOX=1397GN=CEQ21_12070PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	506.26495361328125	2	506.26453	1010.51451	1.0906	0.00055212	-2.7336	-0.0013839	-1.643	-0.00083179	506.2630342285008	155.02	0.8555	155.02	154.72	155.58	0					32	16	3	0	0	0	0.59317	1	18161	18161		42.864	4.0581	1	100960			59286	33236	48883	48929	65092	65092					0.009670977780388057
VENIVYEFDL	10	Unmodified	_VENIVYEFDL_					0	0	0			REV__ENSG00000132017|ENST00000254337|DCAF15	REV__ENSG00000132017|ENST00000254337|DCAF15	MULTI-MSMS	OvCa99_classI_Rep5	1	414.2110900878906	3	414.20805	1239.60232	0.28415	0.0001177	3.5654	0.0014768	3.8495	0.0015945	414.2094540183585	49.088	5.926	49.088	48.204	54.13	0					277	137	3	0	0	0	0.63752	1	3720	3720		37.508	6.9393	1	1950600	+		59287	19049	48884	48930	65093	65093					-0.007897461418451712
VENREAVL	8	Unmodified	_VENREAVL_					0	0	0		nc|ENSG00000137337|Q14676-4|MDC1;nc|ENSG00000137337|Q14676-3|MDC1;nc|ENSG00000137337|Q14676-2|MDC1;ENSG00000137337|ENST00000376406|MDC1	nc|ENSG00000137337|Q14676-4|MDC1	nc|ENSG00000137337|Q14676-4|MDC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.256591796875	2	465.256174	928.497795	-0.29719	-0.00013827	0.27937	0.00012998	-0.017825	-8.2931E-06	465.2561910297744	66.663	0.88394	63.173	62.756	63.64	-3.4902					30	17	2	0	0	0	0.35163	1	4862	4862		97.473	3.4663	1	655460			59288	4578	48885	48931	65094	65094					0.03068596892092046
VENSASIKVI	10	Unmodified	_VENSASIKVI_					0	0	0			REV__ENSG00000166450|ENST00000389286|PRTG	REV__ENSG00000166450|ENST00000389286|PRTG	MULTI-MSMS	OvCa99_classI_Rep5	1	530.3094482421875	2	530.305864	1058.59717	-0.46676	-0.00024753	0.44177	0.00023427	-0.024994	-1.3255E-05	530.3060152079323	48.275	1.1773	48.275	48.028	49.206	0					50	26	4	0	0	0	0.30325	1	3530	3530		80.455	7.5754	1	1793900	+		59289	21196	48886	48932	65095	65095					0.07021994786191499
VEPAVFEPT	9	Unmodified	_VEPAVFEPT_					0	0	0			REV__nc|ENSG00000065534|Q15746-2|MYLK	REV__nc|ENSG00000065534|Q15746-2|MYLK	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.78070068359375	2	494.752933	987.491313	1.4989	0.00074158	-3.3762	-0.0016704	-1.8773	-0.00092879	494.75137696676205	93.186	0.41827	93.186	92.968	93.386	0					12	9	2	0	0	0	0.027462	1	10081	10081		23.042	7.4007	1	301740	+		59290	16797	48887	48933	65096	65096					-0.0029334105927318888
VEPEKKISVPI	11	Unmodified	_VEPEKKISVPI_					0	0	0			REV__nc|ENSG00000065613|Q9H2G2-2|SLK	REV__nc|ENSG00000065613|Q9H2G2-2|SLK	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8683471679688	2	619.871371	1237.72819	-3.8587	-0.0023919	0.76872	0.00047651	-3.09	-0.0019154	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.72473	1	15140	15140		19.104	0	1	492670	+		59291	16799	48888	48934	65097	65097					0.11883385434225602
VEPEKKISVPI	11	Unmodified	_VEPEKKISVPI_					0	0	0			REV__nc|ENSG00000065613|Q9H2G2-2|SLK	REV__nc|ENSG00000065613|Q9H2G2-2|SLK	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8685302734375	2	619.871371	1237.72819	-3.6059	-0.0022352	0.4254	0.00026369	-3.1805	-0.0019715	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.71498	1	12855	12855		24.519	0.31644	1	664560	+		59292	16799	48888	48934	65098	65098					0.11883385434225602
VEPIPSHLALP	11	Unmodified	_VEPIPSHLALP_					0	0	0		nc|ENSG00000197714|Q14592-2|ZNF460;ENSG00000197714|ENST00000360338|ZNF460	nc|ENSG00000197714|Q14592-2|ZNF460	nc|ENSG00000197714|Q14592-2|ZNF460	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.8330078125	2	586.837331	1171.66011	-1.3959	-0.00081919	-4.3296	-0.0025408	-5.7256	-0.00336	586.8348196312893	145.67	2.8806	144.23	143.04	145.92	-1.4357					88	55	2	0	0	0	0.70865	1	14312	14312		26.693	0	1	38613			59293	8739	48889	48935	65099	65099					0.08114560574222196
VEPITLQLV	9	Unmodified	_VEPITLQLV_					0	0	0			REV__tr|A0A553SFB0|A0A553SFB0_NIACIRibulokinaseOS=NialliacirculansOX=1397GN=araBPE=3SV=1	REV__tr|A0A553SFB0|A0A553SFB0_NIACIRibulokinaseOS=NialliacirculansOX=1397GN=araBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.2593078613281	2	506.307875	1010.6012	-0.45562	-0.00023068	-3.3286	-0.0016853	-3.7842	-0.001916	506.30709892048327	80.336	0.25333	77.999	77.864	78.117	-2.337					6	4	2	0	0	0	0.027433	1	4397	4397		54.776	10.66	1	8539.5	+		59294	29558	48890	48936	65100	65100					0.09632084279905939
VEPLEDPQP	9	Unmodified	_VEPLEDPQP_					0	0	0			REV__ENSG00000170458|ENST00000302014|CD14	REV__ENSG00000170458|ENST00000302014|CD14	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.8351440429688	2	512.253297	1022.49204	0.34687	0.00017768	-0.83395	-0.00042719	-0.48708	-0.00024951	512.252962533371	89.623	1.2933	87.048	86.559	87.853	-2.575					37	25	2	0	0	0	0.027462	1	7772	7772		21.96	0	1	20919	+		59295	21540	48891	48937	65101	65101					-0.018305464102354563
VEPLTKLLTH	10	Unmodified	_VEPLTKLLTH_					0	0	0		ENST00000483596.5_1_10:23220925-23250957:+|nuORF;nc|ENSG00000165309|Q5W041-5|ARMC3;nc|ENSG00000165309|Q5W041-3|ARMC3;chr10:23008931-23014100|376|20.19|0.93|4.43|+|ENST00000409049|ARMC3,ARMC3;nc|ENSG00000165309|Q5W041-4|ARMC3;ENSG00000165309|ENST00000298032|ARMC3	ENST00000483596.5_1_10:23220925-23250957:+|nuORF	ENST00000483596.5_1_10:23220925-23250957:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8431396484375	2	575.845156	1149.67576	-4.018	-0.0023138	0.54994	0.00031668	-3.4681	-0.0019971	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.58282	1	12324	12324		44.117	18.667	1	445630			59296	271	48892	48938	65102	65102					0.10690847091291289
VEPMYYSL	8	Unmodified	_VEPMYYSL_					0	0	0			REV__tr|A0A7D7A1C6|A0A7D7A1C6_9CLOTMurR/RpiRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_18130PE=4SV=1	REV__tr|A0A7D7A1C6|A0A7D7A1C6_9CLOTMurR/RpiRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_18130PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	501.2353210449219	2	501.236061	1000.45757	2.3234	0.0011646	-3.9632	-0.0019865	-1.6398	-0.00082192	501.2340704483743	76.073	1.6705	76.073	75.087	76.757	0					72	41	2	0	0	0	0.64026	1	7596	7596		55.504	0.60963	1	3580000	+		59297	32484	48893	48939	65103	65103					-0.04264085822683228
VEPPPGLISL	10	Unmodified	_VEPPPGLISL_					0	0	0			REV__ENSG00000117425|ENST00000372192|PTCH2	REV__ENSG00000117425|ENST00000372192|PTCH2	MULTI-MSMS	OvCa99_classI_Rep5	1	511.30230712890625	2	511.30005	1020.58555	1.1749	0.00060074	0.49465	0.00025291	1.6696	0.00085365	511.3001027660248	155.33	0.66136	155.33	155.02	155.68	0					23	12	3	0	0	0	0.55359	1	18208	18208		47.657	8.4045	1	72075	+		59298	18351	48894	48940	65104	65104					0.07607797762875634
VEPQYQEL	8	Unmodified	_VEPQYQEL_					0	0	0		ENST00000476381.5_1_X:15447791-15497935:-|nuORF;ENSG00000087842|ENST00000380420|PIR	ENST00000476381.5_1_X:15447791-15497935:-|nuORF	ENST00000476381.5_1_X:15447791-15497935:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.2286682128906	2	503.248015	1004.48148	-0.62844	-0.00031626	-2.4693	-0.0012426	-3.0977	-0.0015589	503.24684370969356	37.958	0.49295	37.958	37.714	38.207	0					17	10	3	0	0	0	0.028476	1	2128	2128		34.173	7.4796	1	176840			59299	1779	48895	48941	65105	65105					-0.020585290646749854
VEPSDLKISL	10	Unmodified	_VEPSDLKISL_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MSMS	OvCa9_classI_Rep2	2	550.8128662109375	2	550.813522	1099.61249	0.44129	0.00024307	-0.87894	-0.00048413	-0.43765	-0.00024106	550.8129439494999	106.56	1.7676	106.25	105.88	107.64	-0.30836					58	35	2	0	0	0	0.61634	1	9936	9936		40.058	1.252	1	234630			59300	2078	48896	48942	65106	65106					0.06666861583380523
VEPSDLKISL	10	Unmodified	_VEPSDLKISL_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MSMS	OvCa9_classI_Rep3	3	550.8140869140625	2	550.813522	1099.61249	-0.16415	-9.0414E-05	-0.94122	-0.00051844	-1.1054	-0.00060885	550.8129696109856	107.26	1.4858	105.99	105.76	107.25	-1.267					67	28	4	0	0	0	0.35539	2	7614	7609;7614		74.165	9.9577	1	254060			59301	2078	48896	48942	65107;65108	65108					0.06666861583380523
VEPSDLKISL	10	Unmodified	_VEPSDLKISL_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.813720703125	2	550.813522	1099.61249	-2.1422	-0.00118	0.87934	0.00048435	-1.2629	-0.00069562	550.813949243727	107.78	1.8325	105.9	105.64	107.47	-1.8785					70	36	4	0	0	0	0.47131	2	9849	9849;9862		58.246	10.482	1	230570			59302	2078	48896	48942	65109;65110	65109					0.06666861583380523
VEPTRESTL	9	Unmodified	_VEPTRESTL_					0	0	0		tr|A0A7D6ZPZ2|A0A7D6ZPZ2_9CLOTDUF348domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22440PE=4SV=1	tr|A0A7D6ZPZ2|A0A7D6ZPZ2_9CLOTDUF348domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22440PE=4SV=1	tr|A0A7D6ZPZ2|A0A7D6ZPZ2_9CLOTDUF348domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22440PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.271728515625	2	516.272021	1030.52949	-0.89294	-0.000461	-1.1264	-0.00058155	-2.0194	-0.0010426	516.2711421933835	82.279	1.3083	79.596	79.109	80.417	-2.683					92	26	5	0	0	0	0.31747	1	6797	6797		60.972	2.19	1	796880			59303	35695	48897	48943	65111	65111					0.01544544855391905
VEPVGTADVVV	11	Unmodified	_VEPVGTADVVV_					0	0	0			REV__tr|A0A553SM78|A0A553SM78_NIACINAD(P)-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_22065PE=4SV=1	REV__tr|A0A553SM78|A0A553SM78_NIACINAD(P)-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_22065PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	542.7984008789062	2	542.797872	1083.58119	0.86019	0.00046691	0.29504	0.00016015	1.1552	0.00062706	542.7978567793076	153.16	2.0687	153.16	152.45	154.52	0					102	45	3	0	0	0	0.69081	1	17990	17990		32.812	2.4947	1	105310	+		59304	30304	48898	48944	65112	65112					0.042742885492771165
VEPVGTADVVV	11	Unmodified	_VEPVGTADVVV_					0	0	0			REV__tr|A0A553SM78|A0A553SM78_NIACINAD(P)-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_22065PE=4SV=1	REV__tr|A0A553SM78|A0A553SM78_NIACINAD(P)-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_22065PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	542.7963256835938	2	542.797872	1083.58119	-2.5657	-0.0013927	1.6016	0.00086937	-0.96407	-0.00052329	542.7985901751956	143.31	1.137	142.32	141.94	143.08	-0.9903					51	22	3	0	0	0	0.68684	1	11936	11936		34.173	0	1	119450	+		59305	30304	48898	48944	65113	65113					0.042742885492771165
VEPVKTYAL	9	Unmodified	_VEPVKTYAL_					0	0	0		nc|ENSG00000156958|Q01415-2|GALK2;ENSG00000156958|ENST00000560031|GALK2;ENST00000559040.1_1_15:49448112-49518881:+|nuORF	nc|ENSG00000156958|Q01415-2|GALK2	nc|ENSG00000156958|Q01415-2|GALK2	MULTI-MSMS	OvCa9_classI_Rep3	3	510.29351806640625	2	510.292225	1018.5699	-0.10295	-5.2533E-05	-0.35586	-0.00018159	-0.45881	-0.00023413	510.29192022253056	78.974	1.4952	76.634	76.264	77.759	-2.3399					95	29	5	0	0	0	0.3249	1	4261	4261		60.118	8.7828	1	970550			59306	5865	48899	48945	65114	65114					0.061355112458159056
VEPYIIQIV	9	Unmodified	_VEPYIIQIV_					0	0	0			REV__ENST00000370025.8_1_1:109238340-109238789:+|nuORF	REV__ENST00000370025.8_1_1:109238340-109238789:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.2637329101562	2	537.3157	1072.61685	-0.19656	-0.00010562	-3.9043	-0.0020979	-4.1009	-0.0022035	537.3133010795265	61.141	0.81299	61.141	60.772	61.585	0					37	18	3	0	0	0	0.027462	1	5404	5404		16.473	0	1	436990	+		59307	24952	48900	48946	65115	65115					0.08344370796953626
VEQAEPIH	8	Unmodified	_VEQAEPIH_					0	0	0			REV__nc|ENSG00000100099|Q9NQG7-4|HPS4	REV__nc|ENSG00000100099|Q9NQG7-4|HPS4	MULTI-MSMS	OvCa99_classI_Rep5	1	461.7364501953125	2	461.735074	921.455596	-0.40701	-0.00018793	0.22541	0.00010408	-0.1816	-8.3853E-05	461.7351141276986	51.647	1.5796	51.647	51.248	52.828	0					101	36	5	0	0	0	0.53531	1	4012	4012		73.975	5.1879	1	16940000	+		59308	17365	48901	48947	65116	65116					-0.00827378516294175
VEQEEALRAL	10	Unmodified	_VEQEEALRAL_					0	0	0			REV__ENSG00000100092|ENST00000649765|SH3BP1	REV__ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.3118896484375	2	579.311677	1156.6088	-1.698	-0.00098369	1.3073	0.00075733	-0.39074	-0.00022636	579.3123798976957	100.15	1.4185	97.825	97.315	98.734	-2.3253					83	27	4	0	0	0	0.32926	1	9006	9006		77.318	8.5308	1	1089800	+		59309	17363	48902	48948	65117	65117					0.03676191809518059
VEQEKEILL	9	Unmodified	_VEQEKEILL_					0	0	0		nc|ENSG00000112208|O95816-2|BAG2;ENSG00000112208|ENST00000370693|BAG2	nc|ENSG00000112208|O95816-2|BAG2	nc|ENSG00000112208|O95816-2|BAG2	MULTI-MSMS	OvCa99_classI_Rep5	1	550.81494140625	2	550.813522	1099.61249	1.8949	0.0010438	0.56062	0.0003088	2.4556	0.0013526	550.8137140260889	82.213	0.71556	82.213	81.979	82.694	0					45	16	3	0	0	0	0.17606	1	8503	8503		80.455	0	1	4488600			59310	2886	48903	48949	65118	65118					0.06666861583403261
VEQERLMQL	9	Unmodified	_VEQERLMQL_					0	0	0			REV__tr|A0A7D7A059|A0A7D7A059_9CLOTDUF421domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08645PE=3SV=1	REV__tr|A0A7D7A059|A0A7D7A059_9CLOTDUF421domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08645PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.3394775390625	2	573.302798	1144.59104	0.10637	6.0981E-05	-1.5736	-0.00090215	-1.4672	-0.00084117	573.3019083001236	71.905	0.33742	71.905	71.707	72.045	0					11	7	2	0	0	0	0.027353	1	6966	6966		93.195	21.318	1	334390	+		59311	32437	48904	48950	65119	65119					0.024531532830224023
VEQHLKVA	8	Unmodified	_VEQHLKVA_					0	0	0			REV__tr|A0A553SHN9|A0A553SHN9_NIACILargeribosomalsubunitproteinbL9OS=NialliacirculansOX=1397GN=rplIPE=3SV=1	REV__tr|A0A553SHN9|A0A553SHN9_NIACILargeribosomalsubunitproteinbL9OS=NialliacirculansOX=1397GN=rplIPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	461.7365417480469	2	462.269084	922.523616	-0.19537	-9.0313E-05	0.34553	0.00015973	0.15016	6.9413E-05	462.2691844684551	51.511	0.25282	51.511	51.332	51.585	0					10	5	2	0	0	0	0.028476	1	3983	3983		18.324	0	1	122710	+		59312	29822	48905	48951	65120	65120					0.05925491134371441
VEQITAMLL	9	Oxidation (M)	_VEQITAM(Oxidation (M))LL_		VEQITAM(1)LL		VEQITAM(49)LL	0	0	1		nc|ENSG00000120694|Q92598-2|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-MSMS	OvCa9_classI_Rep2	2	517.2803955078125	2	517.283543	1032.55253	-0.6066	-0.00031378	-2.6448	-0.0013681	-3.2514	-0.0016819	517.2820749382582	138.49	1.03	138.26	137.98	139.01	-0.22697					46	20	3	0	0	0	0.42676	1	13818	13818		49.442	10.42	1	90025			59313	3442	48906	48952	65121	65121		109			0.03755847648494637
VEQITAMLL	9	Oxidation (M)	_VEQITAM(Oxidation (M))LL_					0	0	1		nc|ENSG00000120694|Q92598-2|HSPH1;ENSG00000120694|ENST00000320027|HSPH1;nc|ENSG00000120694|Q92598-4|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	nc|ENSG00000120694|Q92598-2|HSPH1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	517.283543	1032.55253	-1.1941	-0.00061769	-1.8951	-0.0009803	-3.0892	-0.001598	517.2823844230106	139.06	1.1803	138	137.63	138.82	-1.0595	-0.080779	0.00094602	NaN	49.442	50	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95224			59314	3442	48906	48952				109			0.03755847648494637
VEQLELQL	8	Unmodified	_VEQLELQL_					0	0	0		nc|ENSG00000053702|Q9BQI9-2|NRIP2;ENSG00000053702|ENST00000337508|NRIP2	nc|ENSG00000053702|Q9BQI9-2|NRIP2	nc|ENSG00000053702|Q9BQI9-2|NRIP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.77960205078125	2	486.274032	970.533512	1.8419	0.00089566	-0.78462	-0.00038154	1.0573	0.00051412	486.2741009626131	122.46	0.4557	122.46	122.17	122.63	0					12	9	2	0	0	0	0.028476	1	14104	14104		30.504	5.0535	1	96029			59315	1199	48907	48953	65122	65122					0.047066343491110274
VEQLRHPE	8	Unmodified	_VEQLRHPE_					0	0	0			REV__ENST00000467169.1_1_13:114506155-114514873:+|nuORF	REV__ENST00000467169.1_1_13:114506155-114514873:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.3536682128906	2	504.267073	1006.51959	1.8893	0.00095272	-3.293	-0.0016606	-1.4037	-0.00070784	504.2653807439437	136.4	0.66335	136.4	136.16	136.82	0					22	13	2	0	0	0	0.028476	1	15953	15953		39.253	0	1	199340	+		59316	26200	48908	48954	65123	65123					0.016594016406543233
VEQPPKPK	8	Unmodified	_VEQPPKPK_					0	0	0		nc|ENSG00000138347|Q86TC9-2|MYPN;ENSG00000138347|ENST00000358913|MYPN	nc|ENSG00000138347|Q86TC9-2|MYPN	nc|ENSG00000138347|Q86TC9-2|MYPN	MULTI-SECPEP	OvCa9_classI_Rep3	3	462.32476806640625	2	461.77146	921.528367	-1.0188	-0.00047046	0.8709	0.00040216	-0.14792	-6.8307E-05	461.7716421406342	82.668	0.54037	80.371	80.039	80.579	-2.2963					18	10	2	0	0	0	0.028476	1	4653	4653		29.15	0	1	29277			59317	4676	48909	48955	65124	65124					0.0644637527714167
VEQPPKPK	8	Unmodified	_VEQPPKPK_					0	0	0		nc|ENSG00000138347|Q86TC9-2|MYPN;ENSG00000138347|ENST00000358913|MYPN	nc|ENSG00000138347|Q86TC9-2|MYPN	nc|ENSG00000138347|Q86TC9-2|MYPN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	461.77146	921.528367	0.35032	0.00016177	-0.25994	-0.00012003	0.090376	4.1733E-05	461.77116108009056	82.094	0.78116	80.446	80.127	80.908	-1.6485	0.052945	-0.00067172	NaN	29.15	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22426			59318	4676	48909	48955							0.0644637527714167
VEQRQLHQL	9	Unmodified	_VEQRQLHQL_					0	0	0			REV__EXT1|p.R83Pfs*106|1|0.17|ENSG00000182197|chr8:118110799-118110800|-/G|frameshift_variant	REV__EXT1|p.R83Pfs*106|1|0.17|ENSG00000182197|chr8:118110799-118110800|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8182983398438	2	575.820004	1149.62546	-0.060541	-3.4861E-05	-3.6928	-0.0021264	-3.7534	-0.0021613	575.8178355273783	92.029	1.9727	90.793	90.326	92.298	-1.2355					102	37	4	0	0	0	0.38969	1	8202	8202		52.937	5.2794	1	777100	+		59319	28122	48910	48956	65125	65125					0.056627374861591306
VEQRTVPQLV	10	Unmodified	_VEQRTVPQLV_					0	0	0		ENST00000392680.6_2_11:126159701-126160841:+|nuORF;ENST00000488598.5_1_11:126159678-126160841:+|nuORF	ENST00000392680.6_2_11:126159701-126160841:+|nuORF	ENST00000392680.6_2_11:126159701-126160841:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	584.7816772460938	2	584.837862	1167.66117	0.36689	0.00021457	-2.7826	-0.0016274	-2.4157	-0.0014128	584.8363932127572	86.632	1.5906	84.005	83.663	85.253	-2.6269					87	31	4	0	0	0	0.026464	1	7334	7334		69.628	0	1	899460			59320	11232	48911	48957	65126	65126					0.08404774943119264
VEQTAIKVSL	10	Unmodified	_VEQTAIKVSL_					0	0	0		ENST00000480964.5_1_7:44801441-44805210:+|nuORF;ENST00000478045.5_1_7:44801192-44807219:+|nuORF;ENST00000463056.5_1_7:44799906-44807219:+|nuORF;nc|ENSG00000122515|Q8NF64-3|ZMIZ2;nc|ENSG00000122515|Q8NF64-2|ZMIZ2;ENSG00000122515|ENST00000309315|ZMIZ2;ZMIZ2|p.I660Rfs*6|1|0.03|ENSG00000122515|chr7:44764988-44764989|-/CAGGGTCATCT|frameshift_variant;ZMIZ2|p.G659Vfs*11|1|0.04|ENSG00000122515|chr7:44764987-44764988|-/TTAT|frameshift_variant;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1;ENSG00000108175|ENST00000334512|ZMIZ1	ENST00000480964.5_1_7:44801441-44805210:+|nuORF;nc|ENSG00000108175|Q9ULJ6-3|ZMIZ1	ENST00000480964.5_1_7:44801441-44805210:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	544.3218994140625	2	544.321514	1086.62847	3.5154	0.0019135	-2.089	-0.0011371	1.4264	0.00077641	544.32055884955	88.429	0.58836	88.429	88.255	88.843	0					25	13	3	0	0	0	0.23547	1	9410	9410		89.029	18.213	1	1504800			59321	3538;2639	48912	48958	65127	65127					0.08862567820278855
VERAEGVEP	9	Unmodified	_VERAEGVEP_					0	0	0			REV__PAXIP1|p.A840Lfs*22|1|0.08|ENSG00000157212|chr7:154957256-154957256|T/-|frameshift_variant	REV__PAXIP1|p.A840Lfs*22|1|0.08|ENSG00000157212|chr7:154957256-154957256|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.3067321777344	2	493.251089	984.487624	0.52265	0.0002578	-1.1693	-0.00057678	-0.64669	-0.00031898	493.2510188013104	112.98	0.14828	111.53	111.41	111.56	-1.4461					4	2	2	0	0	0	0.027118	1	10438	10438		96.19	27.706	1	7332.1	+		59322	29280	48913	48959	65128	65128					-0.005240108331349802
VERCLSVL	8	Carbamidomethyl (C)	_VERC(Carbamidomethyl (C))LSVL_	VERC(1)LSVL		VERC(96)LSVL		0	1	0		ENSG00000130368|ENST00000674077|MAS1	ENSG00000130368|ENST00000674077|MAS1	ENSG00000130368|ENST00000674077|MAS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.2694091796875	2	488.268227	974.521901	-0.66992	-0.0003271	1.0989	0.00053658	0.42903	0.00020948	488.26881844340147	71.073	1.7956	67.617	67.251	69.047	-3.4563					76	36	3	0	0	0	0.35821	1	5408	5408		96.19	24.813	1	1035500			59323	3983	48914	48960	65129	65129	39				0.033621140541072236
VERCLSVL	8	Carbamidomethyl (C)	_VERC(Carbamidomethyl (C))LSVL_					0	1	0		ENSG00000130368|ENST00000674077|MAS1	ENSG00000130368|ENST00000674077|MAS1	ENSG00000130368|ENST00000674077|MAS1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	488.268227	974.521901	0.21663	0.00010577	-0.29147	-0.00014231	-0.074834	-3.6539E-05	488.2679223464467	70.105	1.5113	67.534	66.915	68.426	-2.5707	-0.04132	-0.00030977	NaN	96.19	75	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	290820			59324	3983	48914	48960			39				0.033621140541072236
VERDFSVRI	9	Unmodified	_VERDFSVRI_					0	0	0		ENSG00000184845|ENST00000393752|DRD1	ENSG00000184845|ENST00000393752|DRD1	ENSG00000184845|ENST00000393752|DRD1	MULTI-SECPEP	OvCa9_classI_Rep2	2	561.3497924804688	2	560.809105	1119.60366	-0.76485	-0.00042893	1.0971	0.00061525	0.33222	0.00018631	560.8096612504578	52.232	0.69429	49.419	49.046	49.74	-2.8129					22	13	2	0	0	0	0.027462	1	3483	3483		31.53	5.9558	1	26899			59325	8195	48915	48961	65130	65130					0.04863932737566756
VERDLTPLI	9	Unmodified	_VERDLTPLI_					0	0	0		RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.T5031Rfs*29|1|0.06|ENSG00000173821|chr17:80389261-80389262|-/TCGG|frameshift_variant;RNF213|p.G5057Vfs*8|1|0.18|ENSG00000173821|chr17:80389340-80389340|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;nc|ENSG00000173821|Q63HN8-6|RNF213;ENST00000427003.7_1_17:78356226-78367295:+|nuORF;ENST00000411702.7_1_17:78356744-78367295:+|nuORF;ENST00000560083.1_1_17:78360201-78362555:+|nuORF	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	528.30859375	2	528.308406	1054.60226	-1.1947	-0.00063115	1.3812	0.00072969	0.18651	9.8533E-05	528.3090685319486	96.257	1.529	94.428	94.123	95.652	-1.8286					52	29	2	0	0	0	0.12515	1	6320	6320		90.37	18.492	1	573190			59326	7416	48916	48962	65131	65131					0.07714298648807016
VERESAKLR	9	Unmodified	_VERESAKLR_					0	0	0		ENSG00000186472|ENST00000333891|PCLO;nc|ENSG00000186472|Q9Y6V0-6|PCLO	ENSG00000186472|ENST00000333891|PCLO	ENSG00000186472|ENST00000333891|PCLO	MULTI-SECPEP	OvCa9_classI_Rep2	2	543.3252563476562	2	544.314554	1086.61456	-0.10857	-5.9099E-05	3.8853	0.0021148	3.7767	0.0020557	544.3164499883992	64.801	0.88644	62.077	61.705	62.591	-2.7245					39	16	3	0	0	0	0.027441	1	4984	4984		40.778	0	1	83423			59327	8338	48917	48963	65132	65132					0.07471335111836197
VERFESKGFQL	11	Unmodified	_VERFESKGFQL_					0	0	0		tr|A0A553SL63|A0A553SL63_NIACINucleosidediphosphatekinaseOS=NialliacirculansOX=1397GN=ndkPE=3SV=1	tr|A0A553SL63|A0A553SL63_NIACINucleosidediphosphatekinaseOS=NialliacirculansOX=1397GN=ndkPE=3SV=1	tr|A0A553SL63|A0A553SL63_NIACINucleosidediphosphatekinaseOS=NialliacirculansOX=1397GN=ndkPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	446.24212646484375	3	447.238343	1338.6932	1.7703	0.00079173	-0.62806	-0.00028089	1.1422	0.00051083	447.2376285375375	58.212	0.25277	55.42	55.273	55.525	-2.7921					6	4	2	0	0	0	0.025524	1	4177	4177		30.139	0	1	8670.4			59328	33687	48918	48964	65133	65133					0.037401426262931636
VERGMPLAL	9	Unmodified	_VERGMPLAL_					0	0	0		ENST00000349048.8_1_21:45746814-45747210:+|nuORF	ENST00000349048.8_1_21:45746814-45747210:+|nuORF	ENST00000349048.8_1_21:45746814-45747210:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.8180236816406	2	493.278595	984.542637	-1.1536	-0.00056903	1.7904	0.00088319	0.63686	0.00031415	493.2792765580065	62.218	0.59329	59.459	59.187	59.78	-2.7593					17	11	2	0	0	0	0.027433	1	4630	4630		51.335	0	1	28929			59329	10641	48919	48965	65134	65134					0.049747044337550506
VERGTDPAL	9	Unmodified	_VERGTDPAL_					0	0	0			REV__ENST00000326685.11_1_5:148521193-148521631:+|nuORF	REV__ENST00000326685.11_1_5:148521193-148521631:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.7778015136719	2	479.253631	956.49271	-0.70123	-0.00033607	0.48299	0.00023148	-0.21824	-0.00010459	479.2539361845625	74.295	0.99574	72.324	71.851	72.847	-1.9711					37	18	3	0	0	0	0.027411	1	6028	6028		64.207	0	1	55026	+		59330	24492	48920	48966	65135	65135					0.012722930294785328
VERISGKF	8	Unmodified	_VERISGKF_					0	0	0		tr|A0A553SP07|A0A553SP07_NIACIFlagellarbasalbodyrodproteinFlgBOS=NialliacirculansOX=1397GN=flgBPE=3SV=1	tr|A0A553SP07|A0A553SP07_NIACIFlagellarbasalbodyrodproteinFlgBOS=NialliacirculansOX=1397GN=flgBPE=3SV=1	tr|A0A553SP07|A0A553SP07_NIACIFlagellarbasalbodyrodproteinFlgBOS=NialliacirculansOX=1397GN=flgBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	468.27001953125	2	468.269084	934.523616	0.66351	0.0003107	-2.3599	-0.0011051	-1.6964	-0.00079438	468.2685558729289	68.381	2.543	64.891	64.333	66.876	-3.4902					125	51	5	0	0	0	0.67745	1	5111	5111		47.916	1.9636	1	649160			59331	33990	48921	48967	65136	65136					0.053734911343894964
VERITVIL	8	Unmodified	_VERITVIL_					0	0	0			REV__nc|ENSG00000153930|Q8N957-2|ANKFN1	REV__nc|ENSG00000153930|Q8N957-2|ANKFN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.76800537109375	2	471.80276	941.590967	0.30635	0.00014454	-0.76478	-0.00036082	-0.45843	-0.00021629	471.80234488676376	55.937	0.70677	52.643	52.464	53.171	-3.2944					15	13	2	0	0	0	0.028476	1	3539	3539		58.782	4.0056	1	25541	+		59332	20353	48922	48968	65137	65137					0.11783521345330428
VERITVIL	8	Unmodified	_VERITVIL_					0	0	0			REV__nc|ENSG00000153930|Q8N957-2|ANKFN1	REV__nc|ENSG00000153930|Q8N957-2|ANKFN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	471.80276	941.590967	-1.0657	-0.00050281	-0.32002	-0.00015098	-1.3857	-0.0006538	471.80233878635823	55.411	0.39729	52.597	52.472	52.869	-2.8139	-0.023061	0.00027295	NaN	58.782	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9876.3	+		59333	20353	48922	48968							0.11783521345330428
VERKLVTK	8	Unmodified	_VERKLVTK_					0	0	0			REV__ENST00000398505.7_1_21:43413696-43413789:-|nuORF	REV__ENST00000398505.7_1_21:43413696-43413789:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	486.8131408691406	2	486.813659	971.612765	-0.51721	-0.00025178	0.25856	0.00012587	-0.25865	-0.00012592	486.8136606093423	57.145	2.3904	54.353	53.634	56.024	-2.792					128	47	4	0	0	0	0.40148	1	4071	4071		87.754	4.1073	1	495540	+		59334	25376	48923	48969	65138	65138					0.12582326093900065
VERKLVTK	8	Unmodified	_VERKLVTK_					0	0	0			REV__ENST00000398505.7_1_21:43413696-43413789:-|nuORF	REV__ENST00000398505.7_1_21:43413696-43413789:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.814208984375	2	486.813659	971.612765	0.0092768	4.5161E-06	-0.57834	-0.00028154	-0.56906	-0.00027703	486.81330722283235	57.818	1.9114	54.473	54.138	56.049	-3.3449					99	37	4	0	0	0	0.55617	1	3813	3813		71.877	0.58177	1	1449700	+		59335	25376	48923	48969	65139	65139					0.12582326093900065
VERKTLSVI	9	Unmodified	_VERKTLSVI_					0	0	0		ENST00000342409.3_1_10:14050278-14050311:-|nuORF	ENST00000342409.3_1_10:14050278-14050311:-|nuORF	ENST00000342409.3_1_10:14050278-14050311:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	522.8236694335938	2	522.824224	1043.63389	0.6555	0.00034271	-1.635	-0.00085481	-0.97949	-0.0005121	522.8233249021611	80.518	1.853	78.823	78.124	79.977	-1.6951					130	36	6	0	0	0	0.37135	1	6841	6841		54.776	4.7518	1	1770100			59336	10579	48924	48970	65140	65140					0.11382291402765077
VERLEKLHKN	10	Unmodified	_VERLEKLHKN_					0	0	0			REV__tr|A0A7D6VNM4|A0A7D6VNM4_9CLOTDinBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15930PE=4SV=1	REV__tr|A0A7D6VNM4|A0A7D6VNM4_9CLOTDinBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15930PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.3699951171875	2	633.369861	1264.72517	-3.7067	-0.0023477	2.7994	0.0017731	-0.90726	-0.00057463	633.3714685413702	153.42	3.7144	151.96	150.68	154.4	-1.4516					273	94	4	0	0	0	0.74374	1	15116	15116		25.574	0	1	395790	+		59337	31193	48925	48971	65141	65141					0.10339555100085818
VERLTGVSI	9	Unmodified	_VERLTGVSI_					0	0	0		nc|ENSG00000137312|O75955-2|FLOT1;ENSG00000137312|ENST00000376389|FLOT1;ENST00000487376.5_1_6:30695895-30698542:-|nuORF	nc|ENSG00000137312|O75955-2|FLOT1	nc|ENSG00000137312|O75955-2|FLOT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.28839111328125	2	487.287474	972.560395	1.1989	0.00058423	-1.8531	-0.00090301	-0.65419	-0.00031878	487.286391356687	84.786	0.72565	82.139	81.884	82.609	-2.6472					32	14	3	0	0	0	0.42576	1	7126	7126		49.536	0	1	223970			59338	4577	48926	48972	65142	65142					0.07301742960294177
VERNESLIKS	10	Unmodified	_VERNESLIKS_					0	0	0		ENSG00000150667|ENST00000350221|FSIP1	ENSG00000150667|ENST00000350221|FSIP1	ENSG00000150667|ENST00000350221|FSIP1	MULTI-MSMS	OvCa99_classI_Rep5	1	587.8250732421875	2	587.824952	1173.63535	-0.51206	-0.000301	-0.49008	-0.00028808	-1.0021	-0.00058908	587.8248809858263	29.411	0.34887	29.411	29.288	29.636	0					17	6	4	0	0	0	0.6349	1	1049	1049		37.812	0	1	153160			59339	5514	48927	48973	65143	65143					0.055478807008512376
VERTRAEGTSQ	11	Unmodified	_VERTRAEGTSQ_					0	0	0			REV__ENSG00000064932|ENST00000361757|SBNO2	REV__ENSG00000064932|ENST00000361757|SBNO2	MULTI-SECPEP	OvCa99_classI_Rep5	1	617.7692260742188	2	617.31274	1232.61093	-0.49403	-0.00030497	-4.403	-0.002718	-4.897	-0.003023	617.3105639392514	49.204	0.43294	49.204	48.94	49.373	0					14	9	2	0	0	0	0.025864	1	3677	3677		26.063	8.5954	1	170120	+		59340	16779	48928	48974	65144	65144					0.003926205473362643
VERVIQQL	8	Unmodified	_VERVIQQL_					0	0	0		GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant;ENSG00000131459|ENST00000253778|GFPT2;nc|ENSG00000198380|Q06210-2|GFPT1;ENSG00000198380|ENST00000357308|GFPT1	GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant;nc|ENSG00000198380|Q06210-2|GFPT1	GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.7955627441406	2	492.795466	983.57638	0.36921	0.00018195	-1.3709	-0.00067559	-1.0017	-0.00049364	492.79468651326295	75.568	1.8138	72.629	72.112	73.926	-2.9389					93	37	3	0	0	0	0.50747	3	5955	5955;5967;5980		76.774	0	1	958700			59341	4066;8812	48929	48975	65145;65146;65147	65145					0.08393449197183145
VERVNEPSI	9	Unmodified	_VERVNEPSI_					0	0	0		nc|ENSG00000100342|O14791-3|APOL1;ENSG00000100342|ENST00000397278|APOL1;nc|ENSG00000100342|O14791-2|APOL1	nc|ENSG00000100342|O14791-3|APOL1	nc|ENSG00000100342|O14791-3|APOL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.7816772460938	2	521.780013	1041.54547	-0.16608	-8.6658E-05	-0.13751	-7.1751E-05	-0.30359	-0.00015841	521.7798827964735	66.858	1.3817	63.368	62.951	64.333	-3.4902					80	27	4	0	0	0	0.14445	1	4886	4886		85.862	13.984	1	1215400			59342	2048	48930	48976	65148	65148					0.026362510922808724
VESEAFVTCM	10	Unmodified	_VESEAFVTCM_					0	0	0			REV__tr|A0A7D7A4J7|A0A7D7A4J7_9CLOTATPaseBadF/BadG/BcrA/BcrDtypedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02115PE=4SV=1	REV__tr|A0A7D7A4J7|A0A7D7A4J7_9CLOTATPaseBadF/BadG/BcrA/BcrDtypedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02115PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	558.7432861328125	2	558.241018	1114.46748	1.9541	0.0010908	0.26672	0.00014889	2.2208	0.0012397	558.2410180558279	122.82	1.7006	122.82	122.49	124.19	0					83	36	4	0	0	0	0.33376	1	14133	14133		76.774	14.667	1	1218400	+		59343	32611	48931	48977	65149	65149					-0.08517265879618208
VESEHQVKI	9	Unmodified	_VESEHQVKI_					0	0	0		ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	ENSG00000162434|ENST00000342505|JAK1	MSMS	OvCa99_classI_Rep5	1	534.7885131835938	2	534.787838	1067.56112	NaN	NaN	NaN	NaN	NaN	NaN	NaN	42.554	1	42.554	42.054	43.054	0								0	0	0	0.035748	1	2744	2744		85.161	19.695	1				59344	6182	48932	48978	65150	65150					0.030045376093539744
VESGLKTIL	9	Unmodified	_VESGLKTIL_					0	0	0		ENSG00000138279|ENST00000372921|ANXA7;nc|ENSG00000138279|P20073|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	ENSG00000138279|ENST00000372921|ANXA7	MULTI-MSMS	OvCa99_classI_Rep5	1	480.2933654785156	2	480.292225	958.569897	1.9991	0.00096015	-0.95408	-0.00045824	1.045	0.00050191	480.2913508441543	87.137	0.82713	87.137	86.844	87.671	0					58	19	4	0	0	0	0.029147	2	9203	9203;9233		136.27	28.181	1	4073600			59345	4672	48933	48979	65151;65152	65151					0.08895511245816579
VESHIQHSL	9	Unmodified	_VESHIQHSL_					0	0	0		ENSG00000168612|ENST00000372523|ZSWIM1	ENSG00000168612|ENST00000372523|ZSWIM1	ENSG00000168612|ENST00000372523|ZSWIM1	MULTI-MSMS	OvCa99_classI_Rep5	1	525.2717895507812	2	525.272355	1048.53016	-0.7751	-0.00040714	0.40355	0.00021197	-0.37155	-0.00019517	525.2724208030912	42.561	0.46677	42.561	42.372	42.839	0					19	10	2	0	0	0	0.13504	1	2742	2742		87.696	20.203	1	891860			59346	6924	48934	48980	65153	65153					0.00783384295095857
VESHLSDQL	9	Unmodified	_VESHLSDQL_					0	0	0		nc|ENSG00000161671|Q5UCC4-2|EMC10;ENSG00000161671|ENST00000334976|EMC10	nc|ENSG00000161671|Q5UCC4-2|EMC10	nc|ENSG00000161671|Q5UCC4-2|EMC10	MULTI-MSMS	OvCa99_classI_Rep5	1	514.2578125	2	514.256371	1026.49819	-1.4986	-0.00077066	0.79854	0.00041065	-0.70005	-0.00036	514.2566859172309	63.966	0.98184	63.966	63.69	64.672	0					54	23	3	0	0	0	0.3076	1	5783	5783		62.107	6.6032	1	6434600			59347	6135	48935	48981	65154	65154					-0.014000281787048152
VESIISPKV	9	Unmodified	_VESIISPKV_					0	0	0		ENSG00000164754|ENST00000297338|RAD21;RAD21-EIF3H|4|fusion;RAD21-EIF3H|1|fusion;RAD21-EIF3H|3|fusion;RAD21-EIF3H|2|fusion	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	OvCa9_classI_Rep2	2	486.2919616699219	2	486.292225	970.569897	0.50608	0.0002461	-0.982	-0.00047754	-0.47593	-0.00023144	486.2914139596311	82.009	3.1326	80.36	79.818	82.951	-1.6485					102	61	3	0	0	0	0.011767	3	6984	6984;6991;6997		163.15	24.325	1	435170			59348	6484	48936	48982	65155;65156;65157	65155					0.08343511245811897
VESIISPKV	9	Unmodified	_VESIISPKV_					0	0	0		ENSG00000164754|ENST00000297338|RAD21;RAD21-EIF3H|4|fusion;RAD21-EIF3H|1|fusion;RAD21-EIF3H|3|fusion;RAD21-EIF3H|2|fusion	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	OvCa9_classI_Rep3	3	486.29302978515625	2	486.292225	970.569897	-1.455	-0.00070755	0.68678	0.00033398	-0.76821	-0.00037357	486.29231840691455	82.504	1.7456	80.208	79.785	81.531	-2.2963					87	35	4	0	0	0	0.010478	2	4659	4659;4671		167.23	32.418	1	834200			59349	6484	48936	48982	65158;65159	65158					0.08343511245811897
VESIISPKV	9	Unmodified	_VESIISPKV_					0	0	0		ENSG00000164754|ENST00000297338|RAD21;RAD21-EIF3H|4|fusion;RAD21-EIF3H|1|fusion;RAD21-EIF3H|3|fusion;RAD21-EIF3H|2|fusion	ENSG00000164754|ENST00000297338|RAD21	ENSG00000164754|ENST00000297338|RAD21	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.29278564453125	2	486.292225	970.569897	-0.30024	-0.00014601	0.30327	0.00014748	0.0030294	1.4732E-06	486.29215054920974	82.909	1.4624	80.226	79.684	81.147	-2.683					87	29	4	0	0	0	0.0072874	4	6868	6857;6868;6880;6892		190.26	32.418	1	700380			59350	6484	48936	48982	65160;65161;65162;65163	65161					0.08343511245811897
VESIYLNVE	9	Unmodified	_VESIYLNVE_					0	0	0		nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3;ENST00000487989.1_1_10:6264793-6268376:+|nuORF;nc|ENSG00000158571|P16118-2|PFKFB1;ENSG00000158571|ENST00000375006|PFKFB1	nc|ENSG00000170525|Q16875-3|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.8095092773438	2	533.276772	1064.53899	-1.3142	-0.00070084	1.3698	0.00073046	0.055545	2.9621E-05	533.2773563273346	77.197	1.4562	74.38	74.001	75.457	-2.8165					59	29	3	0	0	0	0.027137	1	6272	6272		98.629	0	1	303810			59351	7114	48937	48983	65164	65164					0.009303131409296839
VESKQNAEL	9	Unmodified	_VESKQNAEL_					0	0	0		ENSG00000125844|ENST00000377813|RRBP1;nc|ENSG00000125844|Q9P2E9-3|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	ENSG00000125844|ENST00000377813|RRBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	509.2646179199219	2	509.264196	1016.51384	-0.45312	-0.00023076	0.73374	0.00037367	0.28062	0.00014291	509.2642176702353	38.417	1.2129	38.417	38.207	39.42	0					40	26	3	0	0	0	0.024645	1	2176	2176		141.52	28.109	1	1142500			59352	3744	48938	48984	65165	65165					0.006242583383254896
VESLKREL	8	Unmodified	_VESLKREL_					0	0	0		nc|ENSG00000178104|Q5VU43-3|PDE4DIP;nc|ENSG00000178104|Q5VU43|PDE4DIP;nc|ENSG00000178104|Q5VU43-4|PDE4DIP;ENSG00000178104|ENST00000695795|PDE4DIP;nc|ENSG00000178104|Q5VU43-6|PDE4DIP;nc|ENSG00000178104|Q5VU43-7|PDE4DIP;ENST00000533259.1_1_1:144952356-145039598:-|nuORF;ENST00000477941.2_1_1:144952199-144955307:-|nuORF;nc|ENSG00000178104|Q5VU43-11|PDE4DIP;nc|ENSG00000178104|Q5VU43-10|PDE4DIP;nc|ENSG00000178104|Q5VU43-12|PDE4DIP;nc|ENSG00000178104|Q5VU43-8|PDE4DIP;nc|ENSG00000178104|Q5VU43-9|PDE4DIP;PDE4DIP|p.R419Vfs*21|1|0.19|ENSG00000178104|chr1:148965542-148965542|T/-|frameshift_variant;nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;CDK5RAP2|p.Y1498Gfs*4|1|0.29|ENSG00000136861|chr9:120409227-120409240|TCACGCTGGCATAC/-|frameshift_variant	nc|ENSG00000178104|Q5VU43-3|PDE4DIP;PDE4DIP|p.R419Vfs*21|1|0.19|ENSG00000178104|chr1:148965542-148965542|T/-|frameshift_variant;nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.2608947753906	2	487.287474	972.560395	-0.16041	-7.8166E-05	-0.72054	-0.00035111	-0.88095	-0.00042927	487.2871571352957	68.806	0.41339	68.806	68.606	69.019	0					11	9	2	0	0	0	0.028476	1	6526	6526		51.335	0	1	560360			59353	4524;7732;15485	48939	48985	65166	65166					0.0730174296027144
VESLLLQGL	9	Unmodified	_VESLLLQGL_					0	0	0		nc|ENSG00000144045|Q8TE96-2|DQX1;ENSG00000144045|ENST00000404568|DQX1;nc|ENSG00000144045|Q8TE96-3|DQX1;ENST00000473508.1_1_2:74750418-74753390:-|nuORF	nc|ENSG00000144045|Q8TE96-2|DQX1	nc|ENSG00000144045|Q8TE96-2|DQX1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.29254150390625	2	486.292225	970.569897	-1.455	-0.00070755	0.68678	0.00033398	-0.76821	-0.00037357	486.29231840691455	82.504	1.7456	80.208	79.785	81.531	-2.2963					87	35	4	0	0	0	0.041116	1	4665	4665		125.81	4.9456	1	834200			59354	5126	48940	48986	65167	65167					0.08343511245811897
VESLQRVKS	9	Unmodified	_VESLQRVKS_					0	0	0		nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	MSMS	OvCa9_classI_Rep4_	4	523.302490234375	2	523.303655	1044.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.51	1	139.01	138.51	139.51	-1.4952								0	0	0	0.17671	1	13712	13712		39.253	0	1				59355	14857	48941	48987	65168	65168					0.07224530363282611
VESLVRWL	8	Unmodified	_VESLVRWL_					0	0	0			REV__tr|A0A7D6ZHE0|A0A7D6ZHE0_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22620PE=4SV=1	REV__tr|A0A7D6ZHE0|A0A7D6ZHE0_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22620PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2901611328125	2	501.292559	1000.57057	-1.4695	-0.00073667	-2.6975	-0.0013522	-4.167	-0.0020889	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.75241	1	10968	10968		25.45	4.5032	1	97838	+		59356	32022	48942	48988	65169	65169					0.07030350685522535
VESNSVGTTT	10	Unmodified	_VESNSVGTTT_					0	0	0			REV__ENST00000498106.1_1_7:30085848-30088836:+|nuORF	REV__ENST00000498106.1_1_7:30085848-30088836:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.8101501464844	2	497.738011	993.461469	-0.91735	-0.0004566	0.55475	0.00027612	-0.3626	-0.00018048	497.73802155967763	117.87	1.1006	116.53	115.9	117	-1.3444					30	20	2	0	0	0	0.026891	1	10985	10985		31.53	7.3271	1	25400	+		59357	26788	48943	48989	65170	65170					-0.03552324795282402
VESNSVGTTT	10	Unmodified	_VESNSVGTTT_					0	0	0			REV__ENST00000498106.1_1_7:30085848-30088836:+|nuORF	REV__ENST00000498106.1_1_7:30085848-30088836:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	497.738011	993.461469	-0.89323	-0.00044459	-0.31824	-0.0001584	-1.2115	-0.00060299	497.7376144361123	117.65	0.94061	116.61	116.19	117.13	-1.0324	0.043023	-0.00025	NaN	31.53	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19750	+		59358	26788	48943	48989							-0.03552324795282402
VESPFLKEVL	10	Unmodified	_VESPFLKEVL_					0	0	0		ENSG00000110090|ENST00000265641|CPT1A;nc|ENSG00000110090|P50416-2|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	ENSG00000110090|ENST00000265641|CPT1A	MULTI-MSMS	OvCa99_classI_Rep5	1	580.8338623046875	2	580.831714	1159.64888	1.2971	0.00075342	0.56605	0.00032878	1.8632	0.0010822	580.8318452838573	116.9	0.77257	116.9	116.64	117.41	0					36	16	3	0	0	0	0.25842	2	13373	13373;13395		85.862	17.075	1	761970			59359	2757	48944	48990	65171;65172	65171					0.07543738480103457
VESRFVDY	8	Unmodified	_VESRFVDY_					0	0	0			REV__ENST00000264377.7_1_2:207459520-207459607:+|nuORF	REV__ENST00000264377.7_1_2:207459520-207459607:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.79388427734375	2	507.748182	1013.48181	0.10144	5.1506E-05	0.65853	0.00033437	0.75997	0.00038587	508.25052793339245	128.65	0.19806	127.19	127.05	127.25	-1.4565					6	3	2	0	0	0	0.028476	1	12283	12283		25.45	0	1	6356	+		59360	24015	48945	48991	65173	65173					-0.024391093448116408
VESRPLLLL	9	Unmodified	_VESRPLLLL_					0	0	0		ENST00000483330.1_1_7:43908587-43908701:-|nuORF	ENST00000483330.1_1_7:43908587-43908701:-|nuORF	ENST00000483330.1_1_7:43908587-43908701:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	520.3278198242188	2	520.329142	1038.64373	-0.29574	-0.00015388	-0.27656	-0.0001439	-0.57231	-0.00029779	520.3288824399598	115.77	1.6292	114.72	114.06	115.69	-1.0414					54	32	2	0	0	0	0.28934	1	8626	8626		64.207	12.872	1	448460			59361	12586	48946	48992	65174	65174					0.12595479408150823
VESRTTDLL	9	Unmodified	_VESRTTDLL_					0	0	0		DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.F3496Wfs*92|1|0.14|ENSG00000197102|chr14:102034043-102034044|-/GACCTGGCAGCTGTCGAGGC|frameshift_variant;DYNC1H1|p.P2596Tfs*19|1|0.06|ENSG00000197102|chr14:102016936-102016937|-/A|frameshift_variant;DYNC1H1|p.E1316*|1|0.12|ENSG00000197102|chr14:102000128-102000129|-/C|frameshift_variant;DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	517.2809448242188	2	517.279846	1032.54514	-0.37256	-0.00019272	-0.26524	-0.0001372	-0.63779	-0.00032992	517.2798968291082	69.231	0.73604	69.231	68.815	69.552	0					32	17	2	0	0	0	0.14855	1	6572	6572		85.161	7.8432	1	1403800			59362	767;768	48947	48993	65175	65175					0.030168313724288964
VESRTTDLL	9	Unmodified	_VESRTTDLL_					0	0	0		DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.F3496Wfs*92|1|0.14|ENSG00000197102|chr14:102034043-102034044|-/GACCTGGCAGCTGTCGAGGC|frameshift_variant;DYNC1H1|p.P2596Tfs*19|1|0.06|ENSG00000197102|chr14:102016936-102016937|-/A|frameshift_variant;DYNC1H1|p.E1316*|1|0.12|ENSG00000197102|chr14:102000128-102000129|-/C|frameshift_variant;DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	517.279846	1032.54514	-1.5548	-0.00080424	-6.151	-0.0031818	-7.7058	-0.003986	517.2748169476598	72.593	0.43655	69.197	69.009	69.446	-3.3961	-0.016938	-0.0057725	NaN	85.161	10	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21449			59363	767;768	48947	48993							0.030168313724288964
VESSGILNVL	10	Unmodified	_VESSGILNVL_					0	0	0		nc|ENSG00000086758|Q7Z6Z7-2|HUWE1;nc|ENSG00000086758|Q7Z6Z7-3|HUWE1;ENSG00000086758|ENST00000262854|HUWE1;ENST00000218328.12_1_X:53611240-53681066:-|nuORF	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	nc|ENSG00000086758|Q7Z6Z7-2|HUWE1	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.2923583984375	2	515.792589	1029.57063	-0.90446	-0.00046651	-4.0761	-0.0021024	-4.9806	-0.002569	515.7927149545123	93.41	2.0609	90.902	90.01	92.071	-2.5072					115	42	4	0	0	0	0.15262	3	8151	8151;8163;8173		101.6	17.722	1	273020			59364	1754	48948	48994	65176;65177;65178	65176					0.057023058948516336
VESTLAGLPKT	11	Unmodified	_VESTLAGLPKT_					0	0	0			REV__ENST00000424989.1_1_1:37920801-37921029:-|nuORF	REV__ENST00000424989.1_1_1:37920801-37921029:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	559.2905883789062	2	558.318971	1114.62339	1.0547	0.00058884	-1.1569	-0.00064593	-0.10225	-5.7088E-05	558.3181913130499	124.23	1.2446	123.19	122.72	123.96	-1.0377					40	23	3	0	0	0	0.025277	1	9606	9606		40.058	0	1	37434	+		59365	25649	48949	48995	65179	65179					0.0706626395767671
VESTVKCSLLK	11	Carbamidomethyl (C)	_VESTVKC(Carbamidomethyl (C))SLLK_	VESTVKC(1)SLLK		VESTVKC(78)SLLK		0	1	0			REV__nc|ENSG00000157654|Q9Y2D5-7|PALM2AKAP2	REV__nc|ENSG00000157654|Q9Y2D5-7|PALM2AKAP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	632.351318359375	2	632.352488	1262.69042	-0.81799	-0.00051726	-1.7455	-0.0011038	-2.5635	-0.001621	632.3512790362679	100.73	0.69672	98.465	98.187	98.883	-2.2665					42	13	5	0	0	0	0.21275	1	9016	9016		78.264	11.302	1	547900	+		59366	28948	48950	48996	65180	65180	354				0.069585511771038
VESVRQEL	8	Unmodified	_VESVRQEL_					0	0	0			REV__nc|ENSG00000073605|Q8TAX9-5|GSDMB	REV__nc|ENSG00000073605|Q8TAX9-5|GSDMB	MULTI-MSMS	OvCa99_classI_Rep5	1	480.26312255859375	2	480.261456	958.50836	2.2674	0.001089	0.83238	0.00039976	3.0998	0.0014887	480.26195783643885	77.107	0.53724	77.107	76.799	77.336	0					22	12	3	0	0	0	0.56195	1	7760	7760		71.296	0	1	681470	+		59367	16937	48951	48997	65181	65181					0.027445795465382616
VESVVSPPEL	10	Unmodified	_VESVVSPPEL_					0	0	0		ENSG00000168918|ENST00000445964|INPP5D	ENSG00000168918|ENST00000445964|INPP5D	ENSG00000168918|ENST00000445964|INPP5D	MULTI-MSMS	OvCa9_classI_Rep2	2	528.2847290039062	2	528.284597	1054.55464	-1.7589	-0.00092921	1.7414	0.00091994	-0.017547	-9.2698E-06	528.2853995863809	141.02	1.0894	140.79	140.48	141.57	-0.22697					51	21	4	0	0	0	0.41408	1	14121	14121		66.429	4.3219	1	215050			59368	6956	48952	48998	65182	65182					0.029545996579599887
VESWFSLIMP	10	Unmodified	_VESWFSLIMP_					0	0	0		ENSG00000145740|ENST00000396591|SLC30A5;nc|ENSG00000145740|Q8TAD4-2|SLC30A5;ENST00000507354.5_1_5:68398890-68419336:+|nuORF	ENSG00000145740|ENST00000396591|SLC30A5	ENSG00000145740|ENST00000396591|SLC30A5	MULTI-SECPEP	OvCa99_classI_Rep5	1	604.2725219726562	2	604.804642	1207.59473	2.1219	0.0012833	-2.4839	-0.0015023	-0.36201	-0.00021894	604.8032161338424	128.55	0.56201	128.55	128.28	128.84	0					13	11	2	0	0	0	0.026822	1	14933	14933		23.042	0	1	43118			59369	5242	48953	48999	65183	65183					-0.0007617694311647938
VESYNKTTV	9	Unmodified	_VESYNKTTV_					0	0	0			REV__nc|ENSG00000020922|P49959-2|MRE11	REV__nc|ENSG00000020922|P49959-2|MRE11	MULTI-MSMS	OvCa9_classI_Rep2	2	520.7672119140625	2	520.766571	1039.51859	-0.29569	-0.00015399	-0.060329	-3.1417E-05	-0.35602	-0.0001854	520.7664487988831	76.367	3.2453	74.513	73.837	77.082	-1.854					155	62	5	0	0	0	0.48047	1	6341	6341		44.377	0	1	1235300	+		59370	16543	48954	49000	65184	65184					0.00041142481086353655
VESYNKTTV	9	Unmodified	_VESYNKTTV_					0	0	0			REV__nc|ENSG00000020922|P49959-2|MRE11	REV__nc|ENSG00000020922|P49959-2|MRE11	MULTI-MSMS	OvCa9_classI_Rep3	3	520.7665405273438	2	520.766571	1039.51859	-0.63486	-0.00033061	0.077139	4.0171E-05	-0.55772	-0.00029044	520.766555060983	76.275	3.5537	73.903	73.518	77.072	-2.3715					215	69	5	0	0	0	0.35444	1	3987	3987		56.721	10.749	1	4347000	+		59371	16543	48954	49000	65185	65185					0.00041142481086353655
VETAFERL	8	Unmodified	_VETAFERL_					0	0	0		ENSG00000204610|ENST00000376694|TRIM15	ENSG00000204610|ENST00000376694|TRIM15	ENSG00000204610|ENST00000376694|TRIM15	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.2933654785156	2	482.758549	963.502546	-0.56764	-0.00027403	0.25585	0.00012351	-0.31179	-0.00015052	482.7586744184734	91.483	1.5267	88.94	88.193	89.72	-2.5425					59	29	3	0	0	0	0.028476	1	7867	7867		37.159	7.3176	1	256560			59372	9008	48955	49001	65186	65186					0.019334810348709652
VETAKVYQL	9	Unmodified	_VETAKVYQL_					0	0	0		RTF1|p.L620Nfs*2|1|0.12|ENSG00000137815|chr15:41479141-41479142|-/AA|frameshift_variant;ENSG00000137815|ENST00000389629|RTF1	RTF1|p.L620Nfs*2|1|0.12|ENSG00000137815|chr15:41479141-41479142|-/AA|frameshift_variant	RTF1|p.L620Nfs*2|1|0.12|ENSG00000137815|chr15:41479141-41479142|-/AA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.796630859375	2	525.795132	1049.57571	-0.8723	-0.00045865	0.44164	0.00023221	-0.43066	-0.00022644	525.7952629336942	77.425	1.882	74.608	73.86	75.742	-2.8165					94	38	4	0	0	0	0.03923	1	6195	6195		127.46	34.266	1	832020			59373	4621	48956	49002	65187	65187					0.052906097574805244
VETAKVYQL	9	Unmodified	_VETAKVYQL_					0	0	0		RTF1|p.L620Nfs*2|1|0.12|ENSG00000137815|chr15:41479141-41479142|-/AA|frameshift_variant;ENSG00000137815|ENST00000389629|RTF1	RTF1|p.L620Nfs*2|1|0.12|ENSG00000137815|chr15:41479141-41479142|-/AA|frameshift_variant	RTF1|p.L620Nfs*2|1|0.12|ENSG00000137815|chr15:41479141-41479142|-/AA|frameshift_variant	MULTI-MATCH	OvCa99_classI_Rep5	1		2	525.795132	1049.57571	0.8438	0.00044367	1.0964	0.00057646	1.9402	0.0010201	525.7955175759819	74.615	0.55437	74.615	74.366	74.92	0	-0.007052	0.00042065	NaN	127.46	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	945510			59374	4621	48956	49002							0.052906097574805244
VETAKVYQL	9	Unmodified	_VETAKVYQL_					0	0	0		RTF1|p.L620Nfs*2|1|0.12|ENSG00000137815|chr15:41479141-41479142|-/AA|frameshift_variant;ENSG00000137815|ENST00000389629|RTF1	RTF1|p.L620Nfs*2|1|0.12|ENSG00000137815|chr15:41479141-41479142|-/AA|frameshift_variant	RTF1|p.L620Nfs*2|1|0.12|ENSG00000137815|chr15:41479141-41479142|-/AA|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	525.795132	1049.57571	-0.7302	-0.00038394	0.80629	0.00042394	0.076086	4.0006E-05	525.7953021087728	76.497	1.5114	74.643	73.788	75.299	-1.854	0.020797	0.00011561	NaN	127.46	79	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	230800			59375	4621	48956	49002							0.052906097574805244
VETGGSTFII	10	Unmodified	_VETGGSTFII_					0	0	0			REV__ENST00000497256.5_1_2:238969671-238976836:+|nuORF	REV__ENST00000497256.5_1_2:238969671-238976836:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	512.2545166015625	2	512.27149	1022.52843	-0.94555	-0.00048438	-1.1417	-0.00058488	-2.0873	-0.0010693	512.2723622030009	86.256	0.40092	84.035	83.936	84.337	-2.2204					13	7	3	0	0	0	0.026915	1	5150	5150		20.947	0	1	14951	+		59376	26772	48957	49003	65188	65188					0.01806330486465413
VETHELIR	8	Unmodified	_VETHELIR_					0	0	0		ENSG00000100170|ENST00000266088|SLC5A1	ENSG00000100170|ENST00000266088|SLC5A1	ENSG00000100170|ENST00000266088|SLC5A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.2668151855469	2	498.777274	995.539994	-0.57537	-0.00028698	-1.8434	-0.00091946	-2.4188	-0.0012064	498.77593892889087	38.509	0.4487	38.509	38.301	38.75	0					14	9	2	0	0	0	0.028476	1	2196	2196		26.693	0	1	478320			59377	2021	48958	49004	65189	65189					0.04204572300477594
VETICFYLTE	10	Unmodified	_VETICFYLTE_					0	0	0		tr|A0A553SSR5|A0A553SSR5_NIACIIntegraseOS=NialliacirculansOX=1397GN=CEQ21_03485PE=4SV=1	tr|A0A553SSR5|A0A553SSR5_NIACIIntegraseOS=NialliacirculansOX=1397GN=CEQ21_03485PE=4SV=1	tr|A0A553SSR5|A0A553SSR5_NIACIIntegraseOS=NialliacirculansOX=1397GN=CEQ21_03485PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.8944091796875	3	406.530135	1216.56858	1.6412	0.00066719	3.0547	0.0012418	4.6959	0.001909	406.5313242193561	45.872	0.57406	45.872	45.624	46.198	0					25	12	3	0	0	0	0.026849	1	3210	3210		30.569	14.648	1	448520			59378	34407	48959	49005	65190	65190					-0.0310449090527527
VETIETMTAVF	11	Unmodified	_VETIETMTAVF_					0	0	0			REV__tr|A0A553SNW9|A0A553SNW9_NIACIDNApolymeraseIIIPolC-typeOS=NialliacirculansOX=1397GN=polCPE=3SV=1	REV__tr|A0A553SNW9|A0A553SNW9_NIACIDNApolymeraseIIIPolC-typeOS=NialliacirculansOX=1397GN=polCPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	414.2100524902344	3	414.209173	1239.60569	0.43498	0.00018017	0.4869	0.00020168	0.92188	0.00038185	414.20937081363417	47.903	0.78231	47.903	47.422	48.204	0					33	17	2	0	0	0	0.69015	1	3486	3486		33.039	1.0053	1	3046500	+		59379	30468	48960	49006	65191	65191					-0.004528193594978802
VETIKLNT	8	Unmodified	_VETIKLNT_					0	0	0			REV__nc|ENSG00000111799|Q99715-4|COL12A1	REV__nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	459.2701110839844	2	459.26875	916.522947	-0.67934	-0.000312	1.7903	0.00082221	1.1109	0.00051021	459.2693859903413	46.45	1.4871	43.377	43.03	44.517	-3.0724					80	28	5	0	0	0	0.66057	1	2440	2440		51.335	0	1	496780	+		59380	18060	48961	49007	65192	65192					0.06134651694674176
VETIKLNT	8	Unmodified	_VETIKLNT_					0	0	0			REV__nc|ENSG00000111799|Q99715-4|COL12A1	REV__nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	459.26875	916.522947	0.077063	3.5393E-05	1.3821	0.00063474	1.4591	0.00067013	459.26924038620825	46.167	1.3406	43.458	43.099	44.44	-2.7097	0.04015	-0.00020893	NaN	51.335	45	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124560	+		59381	18060	48961	49007							0.06134651694674176
VETIQAQLL	9	Unmodified	_VETIQAQLL_					0	0	0		nc|ENSG00000174672|Q8IWQ3-6|BRSK2;nc|ENSG00000174672|Q8IWQ3-3|BRSK2;nc|ENSG00000174672|Q8IWQ3-2|BRSK2;nc|ENSG00000174672|Q8IWQ3-4|BRSK2;ENSG00000174672|ENST00000528841|BRSK2;nc|ENSG00000174672|Q8IWQ3-5|BRSK2;ENST00000526768.5_1_11:1475616-1478267:+|nuORF;ENST00000531932.1_1_11:1475661-1480576:+|nuORF;ENSG00000160469|ENST00000309383|BRSK1;nc|ENSG00000160469|Q8TDC3-2|BRSK1	nc|ENSG00000174672|Q8IWQ3-6|BRSK2	nc|ENSG00000174672|Q8IWQ3-6|BRSK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.33502197265625	2	507.795132	1013.57571	0.98878	0.0005021	1.3633	0.00069229	2.3521	0.0011944	507.79556729943073	139.53	0.19411	139.53	139.41	139.61	0					5	3	2	0	0	0	0.027462	1	16287	16287		39.253	0	1	11942			59382	7480	48962	49008	65193	65193					0.06946609757483202
VETLEDFDN	9	Unmodified	_VETLEDFDN_					0	0	0			REV__L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|76|2|sense	REV__L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|76|2|sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.772705078125	2	541.237844	1080.46113	0.3009	0.00016286	-0.50035	-0.00027081	-0.19944	-0.00010795	541.2372808579244	98.703	0.72366	97.018	96.801	97.524	-1.685					18	13	2	0	0	0	0.027462	1	6583	6583		19.997	0	1	22043	+		59383	28528	48963	49009	65194	65194					-0.07587744515149097
VETPPNNFNI	10	Unmodified	_VETPPNNFNI_					0	0	0			REV__L1MEg_dup1746|chr2:99099337-99100538:+|1.3153921071676258|0.3908750287807103|1.75|429.0|59|1|anti-sense	REV__L1MEg_dup1746|chr2:99099337-99100538:+|1.3153921071676258|0.3908750287807103|1.75|429.0|59|1|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	572.7890014648438	2	572.785296	1143.55604	2.8484	0.0016315	-0.85349	-0.00048887	1.9949	0.0011426	572.7846053669392	89.649	0.66728	89.649	89.352	90.02	0					35	15	4	0	0	0	0.42082	1	9588	9588		65.465	19.009	1	1235800	+		59384	28449	48964	49010	65195	65195					-0.009997662532896356
VETRDGQVI	9	Unmodified	_VETRDGQVI_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|2|fusion;ENST00000487938.5_1_10:17278234-17279267:+|nuORF;PPFIBP1-VIM|1|fusion	ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|1|fusion	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa99_classI_Rep5	1	508.7732238769531	2	508.772188	1015.52982	-0.62832	-0.00031967	-0.27988	-0.00014239	-0.9082	-0.00046207	508.7722528188697	52.041	0.68704	52.041	51.747	52.434	0					64	15	6	0	0	0	0.049969	1	4061	4061		118.74	17.142	1	3700500			59385	1049;15514	48965	49011	65196	65196					0.022679645752418764
VETRDGQVI	9	Unmodified	_VETRDGQVI_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|2|fusion;ENST00000487938.5_1_10:17278234-17279267:+|nuORF;PPFIBP1-VIM|1|fusion	ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|1|fusion	ENSG00000026025|ENST00000544301|VIM	MULTI-MSMS	OvCa99_classI_Rep5	1	508.77471923828125	2	508.772188	1015.52982	-0.43443	-0.00022103	-0.30017	-0.00015272	-0.7346	-0.00037375	508.77187263243826	55.175	0.83152	55.175	54.891	55.723	0					45	19	4	0	0	0	0.12515	1	4499	4499		90.37	2.6155	1	4557100			59386	1049;15514	48965	49011	65197	65197					0.022679645752418764
VETRDGQVI	9	Unmodified	_VETRDGQVI_					0	0	0		ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|2|fusion;ENST00000487938.5_1_10:17278234-17279267:+|nuORF;PPFIBP1-VIM|1|fusion	ENSG00000026025|ENST00000544301|VIM;PPFIBP1-VIM|1|fusion	ENSG00000026025|ENST00000544301|VIM	MULTI-MATCH	OvCa9_classI_Rep2	2		2	508.772188	1015.52982	-1.2278	-0.00062468	-1.5311	-0.00077896	-2.7589	-0.0014036	509.27196201977824	55.101	0.24973	52.287	52.172	52.422	-2.8139	0.12299	-0.00070891	NaN	118.74	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13515			59387	1049;15514	48965	49011							0.022679645752418764
VETRLGRPS	9	Unmodified	_VETRLGRPS_					0	0	0			REV__ENSG00000132470|ENST00000200181|ITGB4	REV__ENSG00000132470|ENST00000200181|ITGB4	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.266357421875	2	507.788173	1013.56179	-0.5844	-0.00029675	3.624	0.0018402	3.0396	0.0015435	507.78931124272543	86.311	0.98737	84.82	84.444	85.431	-1.4906					46	18	4	0	0	0	0.027455	1	7533	7533		42.396	0	1	135250	+		59388	19082	48966	49012	65198	65198					0.05555377049051913
VETVGKPKAKG	11	Unmodified	_VETVGKPKAKG_					0	0	0		ENST00000420969.1_1_2:162357550-162357775:-|nuORF	ENST00000420969.1_1_2:162357550-162357775:-|nuORF	ENST00000420969.1_1_2:162357550-162357775:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.318115234375	2	557.334956	1112.65536	0.20899	0.00011647	-2.7702	-0.001544	-2.5613	-0.0014275	557.8349124198443	30.508	0.29858	30.508	30.334	30.632	0					8	5	2	0	0	0	0.025806	1	1177	1177		8.2351	0	1	25927			59389	11677	48967	49013	65199	65199					0.10353676431441272
VETVYTHVL	9	Unmodified	_VETVYTHVL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;RPN1|p.R263Tfs*3|1|0.4|ENSG00000163902|chr3:128632004-128632005|-/T|frameshift_variant	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OvCa99_classI_Rep5	1	530.7883911132812	2	530.787307	1059.56006	1.9881	0.0010553	-0.84937	-0.00045083	1.1387	0.00060442	530.7867028605534	85.274	1.3483	85.274	84.963	86.311	0					70	32	5	0	0	0	0.01029	1	8933	8933		167.82	79.182	1	7983400			59390	6376	48968	49014	65200	65200					0.03266323240427482
VETVYTHVL	9	Unmodified	_VETVYTHVL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;RPN1|p.R263Tfs*3|1|0.4|ENSG00000163902|chr3:128632004-128632005|-/T|frameshift_variant	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.7880249023438	2	530.787307	1059.56006	-2.6427	-0.0014027	0.61721	0.00032761	-2.0255	-0.0010751	530.787582237461	87.643	1.2087	85.016	84.599	85.808	-2.6269					60	23	4	0	0	0	0.037627	1	7455	7455		128.86	27.65	1	746510			59391	6376	48968	49014	65201	65201					0.03266323240427482
VETVYTHVL	9	Unmodified	_VETVYTHVL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;RPN1|p.R263Tfs*3|1|0.4|ENSG00000163902|chr3:128632004-128632005|-/T|frameshift_variant	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.787307	1059.56006	-0.61803	-0.00032804	-0.69581	-0.00036933	-1.3138	-0.00069737	530.7864575458445	86.497	2.5685	85.006	84.394	86.963	-1.4906	-0.076211	-0.00076483	NaN	167.82	92	50	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345160			59392	6376	48968	49014							0.03266323240427482
VETVYTHVL	9	Unmodified	_VETVYTHVL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1;RPN1|p.R263Tfs*3|1|0.4|ENSG00000163902|chr3:128632004-128632005|-/T|frameshift_variant	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	530.787307	1059.56006	-0.7837	-0.00041598	0.38641	0.0002051	-0.39729	-0.00021087	530.7874544159661	87.21	1.378	85.033	84.431	85.809	-2.1768	-0.049606	0.00038403	NaN	167.82	66	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	767810			59393	6376	48968	49014							0.03266323240427482
VETWPWQVL	9	Unmodified	_VETWPWQVL_					0	0	0		HEBP1|p.R152Lfs*24|1|0.04|ENSG00000013583|chr12:12975423-12975423|C/-|frameshift_variant;ENSG00000013583|ENST00000014930|HEBP1	HEBP1|p.R152Lfs*24|1|0.04|ENSG00000013583|chr12:12975423-12975423|C/-|frameshift_variant	HEBP1|p.R152Lfs*24|1|0.04|ENSG00000013583|chr12:12975423-12975423|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	579.30517578125	2	579.303124	1156.5917	0.065215	3.7779E-05	-0.043081	-2.4957E-05	0.022134	1.2823E-05	579.3032307396103	162.09	0.76715	162.09	161.82	162.58	0					34	15	4	0	0	0	0.37135	1	19002	19002		54.776	3.2486	1	207810			59394	991	48969	49015	65202	65202					0.0196631599437751
VEVAEESGRL	10	Unmodified	_VEVAEESGRL_					0	0	0		nc|ENSG00000113621|Q96J42-2|TXNDC15;ENSG00000113621|ENST00000358387|TXNDC15	nc|ENSG00000113621|Q96J42-2|TXNDC15	nc|ENSG00000113621|Q96J42-2|TXNDC15	MULTI-MSMS	OvCa99_classI_Rep5	1	544.7835693359375	2	544.782753	1087.55095	0.28358	0.00015449	-1.4703	-0.00080101	-1.1868	-0.00064652	544.7823072870236	63.122	0.78782	63.122	62.86	63.648	0					54	19	4	0	0	0	0.23547	1	5650	5650		89.029	20.242	1	5146200			59395	2983	48970	49016	65203	65203					0.010679298841068885
VEVAEESGRL	10	Unmodified	_VEVAEESGRL_					0	0	0		nc|ENSG00000113621|Q96J42-2|TXNDC15;ENSG00000113621|ENST00000358387|TXNDC15	nc|ENSG00000113621|Q96J42-2|TXNDC15	nc|ENSG00000113621|Q96J42-2|TXNDC15	MULTI-MATCH	OvCa9_classI_Rep2	2		2	544.782753	1087.55095	0.92041	0.00050142	-6.4005	-0.0034869	-5.4801	-0.0029855	544.7788397614386	65.693	1.0468	62.997	62.57	63.617	-2.6958	-0.055466	-0.0019619	NaN	89.029	49	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58176			59396	2983	48970	49016							0.010679298841068885
VEVAEESGRL	10	Unmodified	_VEVAEESGRL_					0	0	0		nc|ENSG00000113621|Q96J42-2|TXNDC15;ENSG00000113621|ENST00000358387|TXNDC15	nc|ENSG00000113621|Q96J42-2|TXNDC15	nc|ENSG00000113621|Q96J42-2|TXNDC15	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	544.782753	1087.55095	-0.82755	-0.00045084	-5.1696	-0.0028163	-5.9971	-0.0032671	544.7798796099742	66.529	0.98402	63.038	62.805	63.789	-3.4902	-0.014222	-0.00062066	NaN	89.029	34	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82262			59397	2983	48970	49016							0.010679298841068885
VEVALLPL	8	Unmodified	_VEVALLPL_					0	0	0		tr|A0A553STV5|A0A553STV5_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_05740PE=3SV=1	tr|A0A553STV5|A0A553STV5_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_05740PE=3SV=1	tr|A0A553STV5|A0A553STV5_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_05740PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	427.2740783691406	2	427.273304	852.532055	1.6743	0.0007154	0.61065	0.00026091	2.285	0.00097632	427.27342207211217	147.57	2.1036	147.57	147.21	149.31	0					75	42	3	0	0	0	0.65582	1	17252	17252		52.299	7.7681	1	231720			59398	34540	48971	49017	65204	65204					0.09989045050997447
VEVCAHRSAKL	11	Unmodified	_VEVCAHRSAKL_					0	0	0			REV__MSH2|p.G751Efs*12|1|0.6|ENSG00000095002|chr2:47478311-47478311|G/-|frameshift_variant	REV__MSH2|p.G751Efs*12|1|0.6|ENSG00000095002|chr2:47478311-47478311|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	606.8333740234375	2	606.829514	1211.64448	0.87439	0.00053061	4.315	0.0026185	5.1894	0.0031491	606.8318108251257	87.469	2.3648	86.038	85.642	88.007	-1.4311					115	47	6	0	0	0	0.19299	1	7662	7662		63.534	0	1	1990900	+		59399	17281	48972	49018	65205	65205					0.047119507855313714
VEVEFRNLI	9	Unmodified	_VEVEFRNLI_					0	0	0			REV__nc|ENSG00000124721|Q96JB1-2|DNAH8	REV__nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-MSMS	OvCa99_classI_Rep5	1	559.8167724609375	2	559.813856	1117.61316	2.0742	0.0011611	3.1356	0.0017553	5.2097	0.0029165	559.8156915922438	133.1	8.2265	133.1	132.6	140.83	0					464	175	6	0	0	0	0.31747	1	15651	15651		60.972	0.85368	1	47573000	+		59400	18702	48973	49019	65206	65206					0.05905701023107213
VEVEIQRL	8	Unmodified	_VEVEIQRL_					0	0	0		ENSG00000177575|ENST00000432237|CD163;nc|ENSG00000177575|Q86VB7|CD163;nc|ENSG00000177575|Q86VB7-2|CD163;ENST00000537044.1_1_12:7633616-7656286:-|nuORF;nc|ENSG00000177575|Q86VB7-4|CD163	ENSG00000177575|ENST00000432237|CD163	ENSG00000177575|ENST00000432237|CD163	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.2873229980469	2	493.287474	984.560395	-0.97379	-0.00048036	0.13829	6.8216E-05	-0.8355	-0.00041214	493.2873193559384	87.353	1.8103	84.726	84.25	86.061	-2.6269					76	35	3	0	0	0	0.30117	1	7426	7426		107.01	30.233	1	376310			59401	7695	48974	49020	65207	65207					0.06749742960278127
VEVEIQRL	8	Unmodified	_VEVEIQRL_					0	0	0		ENSG00000177575|ENST00000432237|CD163;nc|ENSG00000177575|Q86VB7|CD163;nc|ENSG00000177575|Q86VB7-2|CD163;ENST00000537044.1_1_12:7633616-7656286:-|nuORF;nc|ENSG00000177575|Q86VB7-4|CD163	ENSG00000177575|ENST00000432237|CD163	ENSG00000177575|ENST00000432237|CD163	MULTI-MATCH	OvCa9_classI_Rep2	2		2	493.287474	984.560395	0.29789	0.00014694	-0.43748	-0.00021581	-0.13959	-6.886E-05	493.28684040962366	86.311	2.2252	84.82	84.146	86.372	-1.4906	-0.013336	-0.00012369	NaN	107.01	87	43	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202660			59402	7695	48974	49020							0.06749742960278127
VEVEIQRL	8	Unmodified	_VEVEIQRL_					0	0	0		ENSG00000177575|ENST00000432237|CD163;nc|ENSG00000177575|Q86VB7|CD163;nc|ENSG00000177575|Q86VB7-2|CD163;ENST00000537044.1_1_12:7633616-7656286:-|nuORF;nc|ENSG00000177575|Q86VB7-4|CD163	ENSG00000177575|ENST00000432237|CD163	ENSG00000177575|ENST00000432237|CD163	MULTI-MATCH	OvCa9_classI_Rep3	3		2	493.287474	984.560395	-1.1766	-0.00058042	-0.95313	-0.00047017	-2.1298	-0.0010506	493.2877465669139	87.131	1.9365	84.954	84.18	86.117	-2.1768	0.12072	-0.00063241	NaN	107.01	126	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	435230			59403	7695	48974	49020							0.06749742960278127
VEVGFIEEV	9	Unmodified	_VEVGFIEEV_					0	0	0			REV__tr|A0A553SHB3|A0A553SHB3_NIACILargeribosomalsubunitproteinuL23OS=NialliacirculansOX=1397GN=rplWPE=3SV=1	REV__tr|A0A553SHB3|A0A553SHB3_NIACILargeribosomalsubunitproteinuL23OS=NialliacirculansOX=1397GN=rplWPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	510.7640686035156	2	510.76604	1019.51753	0.77819	0.00039747	-4.094	-0.0020911	-3.3159	-0.0016936	510.7638851971749	42.502	1.0859	39.792	39.473	40.559	-2.7097					43	21	3	0	0	0	0.55588	1	2299	2299		37.159	0	1	120810	+		59404	29787	48975	49021	65208	65208					0.00854928112187281
VEVHDGHSQHS	11	Unmodified	_VEVHDGHSQHS_					0	0	0		ENSG00000121904|ENST00000373381|CSMD2;nc|ENSG00000121904|Q7Z408|CSMD2;nc|ENSG00000121904|Q7Z408-2|CSMD2	ENSG00000121904|ENST00000373381|CSMD2	ENSG00000121904|ENST00000373381|CSMD2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	615.3467407226562	2	616.276158	1230.53776	0.24948	0.00015375	1.5943	0.00098252	1.8438	0.0011363	616.2771347648329	83.676	0.63342	81.014	80.73	81.363	-2.6629					22	12	2	0	0	0	0.025806	1	7006	7006		12.812	0	1	40501			59405	3506	48976	49022	65209	65209					-0.06828508175271963
VEVHQVVKL	9	Unmodified	_VEVHQVVKL_					0	0	0		tr|A0A553SRU9|A0A553SRU9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01955PE=4SV=1	tr|A0A553SRU9|A0A553SRU9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01955PE=4SV=1	tr|A0A553SRU9|A0A553SRU9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01955PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	525.8169555664062	2	525.818941	1049.62333	-0.034605	-1.8196E-05	-0.18638	-9.8E-05	-0.22098	-0.0001162	525.8186752814286	93.147	1.4956	91.979	91.55	93.046	-1.168					63	28	4	0	0	0	0.22621	1	8314	8314		71.877	0.49956	1	591320			59406	34301	48977	49023	65210	65210					0.10050308748327552
VEVIKTVSVG	10	Unmodified	_VEVIKTVSVG_					0	0	0			REV__tr|A0A7D6ZWJ8|A0A7D6ZWJ8_9CLOTLPXTGcellwallanchordomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18135PE=4SV=1	REV__tr|A0A7D6ZWJ8|A0A7D6ZWJ8_9CLOTLPXTGcellwallanchordomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18135PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.2681274414062	2	515.810782	1029.60701	-0.47597	-0.00024551	-0.59293	-0.00030584	-1.0689	-0.00055135	515.8100678483072	56.234	1.7414	56.234	55.48	57.221	0					98	41	4	0	0	0	0.026653	1	4603	4603		58.23	10.27	1	2836100	+		59407	32291	48978	49024	65211	65211					0.09339182791563871
VEVKATKDNY	10	Unmodified	_VEVKATKDNY_					0	0	0			REV__tr|A0A553SIX1|A0A553SIX1_NIACIRibosomehibernationpromotingfactorOS=NialliacirculansOX=1397GN=raiAPE=3SV=1	REV__tr|A0A553SIX1|A0A553SIX1_NIACIRibosomehibernationpromotingfactorOS=NialliacirculansOX=1397GN=raiAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	583.8058471679688	2	583.806228	1165.5979	-0.73896	-0.00043141	-0.80366	-0.00046918	-1.5426	-0.00090059	583.8058014433414	35.269	1.0716	35.269	34.957	36.029	0					60	22	5	0	0	0	0.6349	1	1756	1756		37.812	0.65241	1	2869500	+		59408	29940	48979	49025	65212	65212					0.02172789435235245
VEVKRPRGVSL	11	Unmodified	_VEVKRPRGVSL_					0	0	0		nc|ENSG00000130175|P14314-2|PRKCSH;nc|ENSG00000130175|P14314|PRKCSH;ENSG00000130175|ENST00000677123|PRKCSH	nc|ENSG00000130175|P14314-2|PRKCSH	nc|ENSG00000130175|P14314-2|PRKCSH	MULTI-MSMS	OvCa9_classI_Rep2	2	413.92315673828125	3	413.922578	1238.7459	0.26902	0.00011136	-0.32433	-0.00013425	-0.05531	-2.2894E-05	413.9224547119415	58.292	1.633	55.5	55.122	56.755	-2.792					103	31	5	0	0	0	0.69015	1	4212	4212		33.039	2.4705	1	599060			59409	3962	48980	49026	65213	65213					0.1360814547974769
VEVLVPLPQ	9	Unmodified	_VEVLVPLPQ_					0	0	0		nc|ENSG00000141985|Q99961-2|SH3GL1;nc|ENSG00000141985|Q99961-3|SH3GL1;ENSG00000141985|ENST00000269886|SH3GL1	nc|ENSG00000141985|Q99961-2|SH3GL1	nc|ENSG00000141985|Q99961-2|SH3GL1	MULTI-MSMS	OvCa99_classI_Rep5	1	497.30316162109375	2	497.302593	992.590633	0.91197	0.00045353	0.60241	0.00029958	1.5144	0.0007531	497.30275444745587	131.58	0.69975	131.58	131.29	131.99	0					22	14	2	0	0	0	0.56889	1	15287	15287		35.618	0	1	383250			59410	15066	48981	49027	65214	65214					0.09404101625477779
VEVNSSVLADP	11	Unmodified	_VEVNSSVLADP_					0	0	0		ENST00000560717.5_2_15:65295402-65319196:-|nuORF;ENSG00000103707|ENST00000220058|MTFMT	ENST00000560717.5_2_15:65295402-65319196:-|nuORF	ENST00000560717.5_2_15:65295402-65319196:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.33203125	2	565.290411	1128.56627	-0.1656	-9.3614E-05	-0.64816	-0.0003664	-0.81377	-0.00046001	565.2895799069057	118.53	1.0903	117.18	116.94	118.03	-1.3444					27	20	2	0	0	0	0.02568	1	11108	11108		59.931	29.613	1	119230			59411	2337	48982	49028	65215	65215					0.00712796681295913
VEVQGPDWHL	10	Unmodified	_VEVQGPDWHL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant;AHNAK|p.P895Cfs*7|1|0.12|ENSG00000124942|chr11:62531725-62531735|CCACTTCTGGG/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa99_classI_Rep5	1	590.2940673828125	2	590.293288	1178.57202	-2.7181	-0.0016045	0.72433	0.00042757	-1.9938	-0.0011769	590.2936181764509	104.04	1.0131	104.04	103.73	104.74	0					66	23	4	0	0	0	0.023817	2	11639	11639;11669		143.37	58.213	1	5529700			59412	3687	48983	49029	65216;65217	65216					-0.010120600163645577
VEVREELR	8	Unmodified	_VEVREELR_					0	0	0		ENST00000558906.5_1_15:50152393-50311102:-|nuORF;ENST00000559726.5_1_15:50152393-50311102:-|nuORF;ENSG00000104043|ENST00000284509|ATP8B4	ENST00000558906.5_1_15:50152393-50311102:-|nuORF	ENST00000558906.5_1_15:50152393-50311102:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.309326171875	2	515.288005	1028.56146	1.0394	0.00053561	-1.3253	-0.0006829	-0.28583	-0.00014729	515.2876624908406	144.83	0.29276	144.83	144.69	144.99	0					7	5	2	0	0	0	0.028476	1	16933	16933		42.396	0	1	39412			59413	2347	48984	49030	65218	65218					0.04831957329179204
VEVSIPAKL	9	Unmodified	_VEVSIPAKL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OvCa99_classI_Rep5	1	478.2957458496094	2	478.294768	954.574983	2.7055	0.001294	-0.81977	-0.00039209	1.8858	0.00090195	478.2942891255155	97.188	1.324	97.188	96.923	98.247	0					67	30	4	0	0	0	0.012051	2	10657	10657;10679		162.25	42.916	1	13297000			59414	3119	48985	49031	65219;65220	65219					0.09587815108432096
VEVSIPAKL	9	Unmodified	_VEVSIPAKL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OvCa9_classI_Rep2	2	478.2952880859375	2	478.294768	954.574983	-0.047514	-2.2725E-05	0.070843	3.3884E-05	0.023329	1.1158E-05	478.29464206408153	97.007	1.8152	96.048	95.777	97.592	-0.95857					83	36	4	0	0	0	0.03923	5	8767	8767;8772;8778;8784;8791		127.46	47.749	1	729080			59415	3119	48985	49031	65221;65222;65223;65224;65225	65221					0.09587815108432096
VEVSIPAKL	9	Unmodified	_VEVSIPAKL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OvCa9_classI_Rep3	3	478.2950744628906	2	478.294768	954.574983	0.064944	3.1062E-05	-1.3309	-0.00063656	-1.2659	-0.0006055	478.29444132140264	97.771	2.1872	96.012	95.362	97.55	-1.7595					82	42	3	0	0	0	0.025955	3	6500	6500;6506;6518		139.97	41.341	1	1014000			59416	3119	48985	49031	65226;65227;65228	65226					0.09587815108432096
VEVSIPAKL	9	Unmodified	_VEVSIPAKL_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.2956848144531	2	478.294768	954.574983	0.34101	0.0001631	-0.34556	-0.00016528	-0.0045507	-2.1766E-06	478.2944577068411	98.272	1.989	95.893	95.624	97.614	-2.3786					73	38	3	0	0	0	0.049969	3	8724	8724;8736;8751		118.74	28.373	1	920160			59417	3119	48985	49031	65229;65230;65231	65229					0.09587815108432096
VEVSPAVTKGL	11	Unmodified	_VEVSPAVTKGL_					0	0	0		ENSG00000133104|ENST00000438666|SPART;ENST00000475603.5_1_13:36886596-36900733:-|nuORF;ENST00000482146.1_1_13:36888157-36888547:-|nuORF	ENSG00000133104|ENST00000438666|SPART	ENSG00000133104|ENST00000438666|SPART	MULTI-MSMS	OvCa99_classI_Rep5	1	550.3246459960938	2	550.321514	1098.62847	2.9295	0.0016121	-0.0042944	-2.3633E-06	2.9252	0.0016098	550.3216471903193	102.45	0.68148	102.45	102.17	102.85	0					31	15	3	0	0	0	0.39237	1	11436	11436		61.691	3.4614	1	1194200			59418	4198	48986	49032	65232	65232					0.08310567820285542
VEVSWSPYL	9	Unmodified	_VEVSWSPYL_					0	0	0			REV__ENSG00000101574|ENST00000574538|METTL4	REV__ENSG00000101574|ENST00000574538|METTL4	MULTI-MSMS	OvCa9_classI_Rep3	3	540.2723388671875	2	540.274032	1078.53351	0.11467	6.1953E-05	-3.9676	-0.0021436	-3.8529	-0.0020816	540.2718433132188	89.741	1.4827	87.66	87.239	88.722	-2.0805					86	28	5	0	0	0	0.46377	1	5539	5539		45.952	1.5748	1	580510	+		59419	17505	48987	49033	65233	65233					-0.0026136565090837394
VEVVITHL	8	Unmodified	_VEVVITHL_					0	0	0		ENSG00000153048|ENST00000311052|CARHSP1	ENSG00000153048|ENST00000311052|CARHSP1	ENSG00000153048|ENST00000311052|CARHSP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	455.2743225097656	2	455.273835	908.533118	1.4867	0.00067687	-1.3987	-0.00063678	0.088072	4.0097E-05	455.2731021537892	96.917	1.2023	94.492	94.22	95.423	-2.4256					49	23	3	0	0	0	0.36941	1	8585	8585		94.006	28.203	1	218010			59420	5657	48988	49034	65234	65234					0.07519259419893842
VEVVITHL	8	Unmodified	_VEVVITHL_					0	0	0		ENSG00000153048|ENST00000311052|CARHSP1	ENSG00000153048|ENST00000311052|CARHSP1	ENSG00000153048|ENST00000311052|CARHSP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	455.273835	908.533118	1.2877	0.00058627	-1.3163	-0.00059927	-0.028555	-1.3E-05	455.2731333798739	95.612	0.99355	94.584	94.268	95.262	-1.0281	0.06557	-0.00061745	NaN	94.006	50	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	154790			59421	5657	48988	49034							0.07519259419893842
VEVVITHL	8	Unmodified	_VEVVITHL_					0	0	0		ENSG00000153048|ENST00000311052|CARHSP1	ENSG00000153048|ENST00000311052|CARHSP1	ENSG00000153048|ENST00000311052|CARHSP1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	455.273835	908.533118	-0.79875	-0.00036365	1.1043	0.00050278	0.30559	0.00013913	455.2741989117315	96.308	1.381	94.48	94.221	95.602	-1.8286	-0.038861	0.0015866	NaN	94.006	57	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226390			59422	5657	48988	49034							0.07519259419893842
VEVVRRTI	8	Unmodified	_VEVVRRTI_					0	0	0			REV__tr|A0A553SIL2|A0A553SIL2_NIACIGlycosyltransferasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_15070PE=4SV=1	REV__tr|A0A553SIL2|A0A553SIL2_NIACIGlycosyltransferasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_15070PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.7637023925781	2	486.303458	970.592364	-0.27193	-0.00013224	3.9739	0.0019325	3.702	0.0018003	486.30526274643734	62.661	1.4042	59.203	58.864	60.268	-3.4577					63	28	3	0	0	0	0.028476	1	4347	4347		19.997	0	1	364910	+		59423	29902	48989	49035	65235	65235					0.10589155434104214
VEWRVLGM	8	Unmodified	_VEWRVLGM_					0	0	0		ENSG00000129749|ENST00000250699|CHRNA10	ENSG00000129749|ENST00000250699|CHRNA10	ENSG00000129749|ENST00000250699|CHRNA10	MULTI-SECPEP	OvCa9_classI_Rep3	3	494.302001953125	2	495.265487	988.516422	1.2195	0.00060396	-1.7456	-0.00086455	-0.52616	-0.00026059	495.2643882982151	126.22	0.47208	125.15	125.02	125.49	-1.0715					12	8	2	0	0	0	0.028476	1	9864	9864		18.324	0	1	15380			59424	3944	48990	49036	65236	65236					0.02170435262303272
VEYLKFVLQD	10	Unmodified	_VEYLKFVLQD_					0	0	0		sp|P16761|PP85_HCMVAPhosphoprotein85OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL25PE=3SV=1;sp|F5HGJ4|PP85_HCMVMPhosphoprotein85OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL25PE=1SV=1	sp|P16761|PP85_HCMVAPhosphoprotein85OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL25PE=3SV=1	sp|P16761|PP85_HCMVAPhosphoprotein85OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL25PE=3SV=1	MSMS	OvCa99_classI_Rep5	1	418.5634460449219	3	418.564056	1252.67034	NaN	NaN	NaN	NaN	NaN	NaN	NaN	37.347	1	37.347	36.847	37.847	0								0	0	0	0.15165	1	2040	2040		47.96	7.9014	1				59425	32875	48991	49037	65237	65237					0.05411123508815763
VEYPYKEL	8	Unmodified	_VEYPYKEL_					0	0	0			REV__tr|A0A553SSZ0|A0A553SSZ0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_03780PE=3SV=1	REV__tr|A0A553SSZ0|A0A553SSZ0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_03780PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	520.767578125	2	520.768583	1039.52261	0.016547	8.6173E-06	-3.8341	-0.0019967	-3.8176	-0.0019881	520.7665795556696	73.986	3.2446	73.986	73.678	76.922	0					206	81	5	0	0	0	0.56195	1	7477	7477		71.296	5.4925	1	128020000	+		59426	30896	48992	49038	65238	65238					0.00443231974804803
VFAGAIPIFI	10	Unmodified	_VFAGAIPIFI_					0	0	0		tr|A0A553SPG7|A0A553SPG7_NIACIAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_26175PE=3SV=1	tr|A0A553SPG7|A0A553SPG7_NIACIAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_26175PE=3SV=1	tr|A0A553SPG7|A0A553SPG7_NIACIAminotransferaseclassI/II-foldpyridoxalphosphate-dependentenzymeOS=NialliacirculansOX=1397GN=CEQ21_26175PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.3036499023438	2	524.315503	1046.61645	1.3586	0.00071234	-3.7056	-0.0019429	-2.347	-0.0012306	524.3139175255354	101.22	0.37792	101.22	101.06	101.44	0					17	8	3	0	0	0	0.027007	1	11244	11244		26.796	13.021	1	508090			59427	34041	48993	49039	65239	65239					0.09500995867756501
VFAGVFNTF	9	Unmodified	_VFAGVFNTF_					0	0	0		ENSG00000124491|ENST00000264870|F13A1;F13A1|p.T497Dfs*8|1|0.03|ENSG00000124491|chr6:6174838-6174839|-/C|frameshift_variant	ENSG00000124491|ENST00000264870|F13A1	ENSG00000124491|ENST00000264870|F13A1	MULTI-MSMS	OvCa99_classI_Rep5	1	501.2594909667969	2	501.258185	1000.50182	1.1939	0.00059847	0.98173	0.0004921	2.1757	0.0010906	501.25854766123564	143.61	1.283	143.61	143.27	144.55	0					52	25	3	0	0	0	0.36502	1	16771	16771		55.504	18.345	1	438890			59428	3654	48994	49040	65240	65240					0.0015868638580514016
VFALNLKPN	9	Unmodified	_VFALNLKPN_					0	0	0			REV__ENSG00000120756|ENST00000457734|PLS1	REV__ENSG00000120756|ENST00000457734|PLS1	MULTI-MSMS	OvCa9_classI_Rep2	2	508.3009948730469	2	508.300384	1014.58622	1.4265	0.00072511	1.171	0.00059521	2.5975	0.0013203	508.30093068725466	90.387	2.8271	89.085	88.433	91.26	-1.302					94	54	2	0	0	0	0.46377	1	7962	7962		45.952	5.1738	1	695110	+		59429	18515	48995	49041	65241	65241					0.07950637202554844
VFALSNEDPL	10	Unmodified	_VFALSNEDPL_					0	0	0		EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant;nc|ENSG00000110723|Q8NEV8-2|EXPH5;ENSG00000110723|ENST00000265843|EXPH5	EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant	EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.7813110351562	2	552.782222	1103.54989	0.63173	0.00034921	-0.68389	-0.00037804	-0.052168	-2.8837E-05	552.7817648589835	113.92	0.90338	112.47	112.2	113.1	-1.4461					30	17	2	0	0	0	0.59703	1	10572	10572		42.396	3.1433	1	119140			59430	2792	48996	49042	65242	65242					0.0022571551517103217
VFALSNEDPL	10	Unmodified	_VFALSNEDPL_					0	0	0		EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant;nc|ENSG00000110723|Q8NEV8-2|EXPH5;ENSG00000110723|ENST00000265843|EXPH5	EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant	EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	552.782222	1103.54989	1.4177	0.0007837	-2.1333	-0.0011793	-0.7156	-0.00039557	552.7808148802254	112.87	1.0853	112.75	112.28	113.36	-0.12174	0.16954	-0.0011252	NaN	42.396	39	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60176			59431	2792	48996	49042							0.0022571551517103217
VFALSNEDPL	10	Unmodified	_VFALSNEDPL_					0	0	0		EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant;nc|ENSG00000110723|Q8NEV8-2|EXPH5;ENSG00000110723|ENST00000265843|EXPH5	EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant	EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	552.782222	1103.54989	0.34181	0.00018894	-1.4806	-0.00081848	-1.1388	-0.00062953	552.781833925225	113.59	0.92855	112.51	112.1	113.03	-1.0753	-0.065033	-0.00040359	NaN	42.396	37	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	102510			59432	2792	48996	49042							0.0022571551517103217
VFANNWDEW	9	Unmodified	_VFANNWDEW_					0	0	0		tr|A0A553STB6|A0A553STB6_NIACICDIimmunityproteindomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04685PE=4SV=1	tr|A0A553STB6|A0A553STB6_NIACICDIimmunityproteindomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04685PE=4SV=1	tr|A0A553STB6|A0A553STB6_NIACICDIimmunityproteindomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04685PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	591.3599243164062	2	590.756538	1179.49852	1.6201	0.00095708	-3.7505	-0.0022156	-2.1304	-0.0012585	590.7540681612363	130.11	0.85764	130.11	129.87	130.72	0					28	17	3	0	0	0	0.027462	1	15130	15130		29.15	0	1	159040			59433	34473	48997	49043	65243	65243					-0.0840460845886355
VFASILLVDG	10	Unmodified	_VFASILLVDG_					0	0	0			REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.8087158203125	2	517.30005	1032.58555	0.67274	0.00034801	1.2149	0.00062848	1.8877	0.00097649	517.3006557136239	156.81	0.60118	156.81	156.65	157.25	0					17	11	2	0	0	0	0.026982	1	18357	18357		38.806	13.356	1	37055	+		59434	22662	48998	49044	65244	65244					0.07055797762882321
VFAVHKPK	8	Unmodified	_VFAVHKPK_					0	0	0		ENST00000485065.1_1_10:116698192-116719580:+|nuORF;ENSG00000165832|ENST00000298746|TRUB1	ENST00000485065.1_1_10:116698192-116719580:+|nuORF	ENST00000485065.1_1_10:116698192-116719580:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	462.7918701171875	2	463.284537	924.554522	-1.3616	-0.00063081	-2.9384	-0.0013613	-4.3	-0.0019921	463.2829228823728	54.661	0.461	51.414	51.132	51.593	-3.2474					14	8	2	0	0	0	0.028476	1	3418	3418		13.775	0	1	52380			59435	6605	48999	49045	65245	65245					0.0892268923927304
VFAVVIYF	8	Unmodified	_VFAVVIYF_					0	0	0		ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000058262|P61619-3|SEC61A1;chr3:128065037-128067421|89|20.82|0.63|5.05|+|0|SEC61A1,SEC61A1|1;chr3:128065037-128066927|95|33.95|0.34|6.63|+|0|SEC61A1,SEC61A1|1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENSG00000065665|ENST00000298428|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1;nc|ENSG00000065665|Q9H9S3-3|SEC61A2;ENST00000495368.1_1_10:12184516-12209761:+|nuORF;nc|ENSG00000065665|Q9H9S3-2|SEC61A2	ENSG00000058262|ENST00000243253|SEC61A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.2774963378906	2	479.275847	956.537141	3.5568	0.0017047	-0.49887	-0.00023909	3.0579	0.0014656	479.27553640678605	133.27	4.5468	131.74	130.46	135.01	-1.5257					141	91	2	0	0	0	0.7363	1	13053	13053		33.493	0	1	46858			59436	1242;1335;12773;14885	49000	49046	65246	65246					0.05713348913616301
VFCAPFLI	8	Carbamidomethyl (C)	_VFC(Carbamidomethyl (C))APFLI_	VFC(1)APFLI		VFC(67)APFLI		0	1	0			REV__tr|A0A553STI4|A0A553STI4_NIACIFormate/nitritetransporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05035PE=4SV=1	REV__tr|A0A553STI4|A0A553STI4_NIACIFormate/nitritetransporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05035PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	483.759765625	2	483.759507	965.50446	1.787	0.00086446	-2.8433	-0.0013755	-1.0564	-0.00051102	483.75798479305814	134.7	2.7244	134.7	134.34	137.06	0					135	58	4	0	0	0	0.58426	1	15658	15658		67.327	12.433	1	4346500	+		59437	30967	49001	49047	65247	65247	368				0.020328185191260673
VFDAFVIVI	9	Unmodified	_VFDAFVIVI_					0	0	0		MCOLN2|p.F420Vfs*15|1|0.17|ENSG00000153898|chr1:84937832-84937833|-/CCTTCCTCATCAACTTTCTTTAC|frameshift_variant;ENST00000531325.5_1_1:85403252-85462600:-|nuORF;nc|ENSG00000153898|Q8IZK6-2|MCOLN2;ENSG00000153898|ENST00000370608|MCOLN2	MCOLN2|p.F420Vfs*15|1|0.17|ENSG00000153898|chr1:84937832-84937833|-/CCTTCCTCATCAACTTTCTTTAC|frameshift_variant	MCOLN2|p.F420Vfs*15|1|0.17|ENSG00000153898|chr1:84937832-84937833|-/CCTTCCTCATCAACTTTCTTTAC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.254150390625	2	511.799686	1021.58482	2.2737	0.0011637	-3.6833	-0.0018851	-1.4095	-0.0007214	511.7977732791987	86.072	0.68185	86.072	85.75	86.431	0					26	16	3	0	0	0	0.027425	1	9024	9024		60.294	38.334	1	894000			59438	5698	49002	49048	65248	65248					0.07489003113801118
VFDESTRKI	9	Unmodified	_VFDESTRKI_					0	0	0		ENST00000503370.5_1_4:123814341-123838767:-|nuORF;ENST00000513517.1_1_4:123818758-123838869:-|nuORF;ENSG00000170917|ENST00000304430|NUDT6	ENST00000503370.5_1_4:123814341-123838767:-|nuORF	ENST00000503370.5_1_4:123814341-123838767:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	547.7976684570312	2	547.795663	1093.57677	2.7177	0.0014888	1.0717	0.00058705	3.7894	0.0020758	547.7960579499785	99.056	0.72786	99.056	98.801	99.529	0					52	17	4	0	0	0	0.38529	1	10962	10962		53.351	0	1	5845100			59439	7151	49003	49049	65249	65249					0.03372824126381602
VFDLGWTKT	9	Unmodified	_VFDLGWTKT_					0	0	0			REV__nc|ENSG00000143952|Q9P1Q0-4|VPS54	REV__nc|ENSG00000143952|Q9P1Q0-4|VPS54	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.80810546875	2	533.782025	1065.5495	-0.27165	-0.000145	-4.0572	-0.0021657	-4.3289	-0.0023107	533.7798381901702	77.023	0.88683	74.651	74.348	75.234	-2.3715					30	16	2	0	0	0	0.027118	1	4037	4037		84.916	53.386	1	103060	+		59440	19878	49004	49050	65250	65250					0.01934340586012695
VFDLGWTKT	9	Unmodified	_VFDLGWTKT_					0	0	0			REV__nc|ENSG00000143952|Q9P1Q0-4|VPS54	REV__nc|ENSG00000143952|Q9P1Q0-4|VPS54	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.8095092773438	2	533.782025	1065.5495	-1.0497	-0.00056031	-3.5671	-0.0019041	-4.6168	-0.0024644	533.7798415171906	77.957	0.67976	75.14	74.922	75.601	-2.8165					22	13	2	0	0	0	0.027232	1	6272	6272		76.774	0	1	116890	+		59441	19878	49004	49050	65251	65251					0.01934340586012695
VFDLGWTKT	9	Unmodified	_VFDLGWTKT_					0	0	0			REV__nc|ENSG00000143952|Q9P1Q0-4|VPS54	REV__nc|ENSG00000143952|Q9P1Q0-4|VPS54	MULTI-MATCH	OvCa99_classI_Rep5	1		2	533.782025	1065.5495	1.0602	0.00056592	-1.6635	-0.00088797	-0.60333	-0.00032205	533.7805556108312	74.574	0.24046	74.574	74.478	74.718	0	-0.038658	0.0022622	NaN	84.916	9	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122810	+		59442	19878	49004	49050							0.01934340586012695
VFDLPEAEAEP	11	Unmodified	_VFDLPEAEAEP_					0	0	0			REV__nc|ENSG00000167011|Q8N8M0-2|NAT16	REV__nc|ENSG00000167011|Q8N8M0-2|NAT16	MULTI-MSMS	OvCa9_classI_Rep3	3	608.789306640625	2	608.790244	1215.56593	0.77672	0.00047286	-0.58707	-0.0003574	0.18964	0.00011545	608.7896927819082	135.16	1.3782	134.05	133.72	135.1	-1.1076					76	27	4	0	0	0	0.50928	1	10923	10923		52.937	0	1	189180	+		59443	21247	49005	49051	65252	65252					-0.03322623038570782
VFDLTSVALL	10	Unmodified	_VFDLTSVALL_					0	0	0			REV__nc|ENSG00000221955|A0AV02-2|SLC12A8	REV__nc|ENSG00000221955|A0AV02-2|SLC12A8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.7214965820312	2	539.313158	1076.61176	-1.9663	-0.0010605	1.715	0.00092492	-0.25135	-0.00013555	539.31392456282	118.64	0.78676	117.29	117	117.78	-1.3444					33	14	3	0	0	0	0.026669	1	11153	11153		38.806	0	1	66711	+		59444	23350	49006	49052	65253	65253					0.07652066934338109
VFDPKVFTF	9	Unmodified	_VFDPKVFTF_					0	0	0		nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;ENSG00000112297|ENST00000633556|CRYBG1	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	MULTI-MSMS	OvCa99_classI_Rep5	1	550.2959594726562	2	550.294768	1098.57498	1.6084	0.00088511	0.46041	0.00025336	2.0688	0.0011385	550.2947563742177	126.37	1.0539	126.37	126.09	127.14	0					48	22	4	0	0	0	0.024645	2	14617	14595;14617		141.52	50.744	1	1601900			59445	2894	49007	49053	65254;65255	65255					0.029638151084100173
VFDPKVFTF	9	Unmodified	_VFDPKVFTF_					0	0	0		nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;ENSG00000112297|ENST00000633556|CRYBG1	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	550.294768	1098.57498	1.1904	0.00065507	-3.8289	-0.002107	-2.6385	-0.0014519	550.2921702569395	126.41	0.58985	126.17	125.8	126.39	-0.2359	-0.037303	-0.0035178	NaN	141.52	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25994			59446	2894	49007	49053							0.029638151084100173
VFDPKVFTF	9	Unmodified	_VFDPKVFTF_					0	0	0		nc|ENSG00000112297|Q9Y4K1-1|CRYBG1;ENSG00000112297|ENST00000633556|CRYBG1	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	nc|ENSG00000112297|Q9Y4K1-1|CRYBG1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	550.294768	1098.57498	0.70253	0.0003866	-2.7996	-0.0015406	-2.097	-0.001154	550.2931238032021	127.15	0.67548	126.08	125.76	126.43	-1.0715	-0.12677	-0.0023849	NaN	141.52	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24478			59447	2894	49007	49053							0.029638151084100173
VFDRGRFDAI	10	Unmodified	_VFDRGRFDAI_					0	0	0			REV__ENSG00000128731|ENST00000261609|HERC2	REV__ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	598.3157348632812	2	598.314554	1194.61456	-0.10474	-6.2667E-05	2.3361	0.0013977	2.2314	0.0013351	598.316223305457	109.07	8.6473	107.34	106.82	115.46	-1.7256					380	168	6	0	0	0	0.60504	1	10151	10151		41.427	4.9799	1	25436000	+		59448	18868	49008	49054	65256	65256					0.025033351118509017
VFDSLVHII	9	Unmodified	_VFDSLVHII_					0	0	0		DOCK4|p.F1456Lfs*4|1|0.11|ENSG00000128512|chr7:111755521-111755536|ACGCTTTTCCACTTCA/-|frameshift_variant;ENST00000492532.1_7:111509614-111512393:-|nuORF;ENST00000476846.1_7:111503332-111846439:-|nuORF;nc|ENSG00000128512|Q8N1I0-2|DOCK4;nc|ENSG00000128512|Q8N1I0|DOCK4;ENSG00000128512|ENST00000428084|DOCK4	DOCK4|p.F1456Lfs*4|1|0.11|ENSG00000128512|chr7:111755521-111755536|ACGCTTTTCCACTTCA/-|frameshift_variant;nc|ENSG00000128512|Q8N1I0-2|DOCK4	nc|ENSG00000128512|Q8N1I0-2|DOCK4	MULTI-MSMS	OvCa9_classI_Rep3	3	521.7996215820312	2	521.800217	1041.58588	1.4995	0.00078246	-3.035	-0.0015837	-1.5355	-0.00080122	521.7982124194368	125.43	1.0915	124.38	124.11	125.2	-1.0519					48	20	3	0	0	0	0.44294	1	9756	9756		47.916	9.1095	1	205620			59449	3882;758	49009	49055	65257	65257					0.0667521748271156
VFDTAIAHLF	10	Unmodified	_VFDTAIAHLF_					0	0	0		ENSG00000181788|ENST00000312960|SIAH2	ENSG00000181788|ENST00000312960|SIAH2	ENSG00000181788|ENST00000312960|SIAH2	MULTI-SECPEP	OvCa9_classI_Rep3	3	566.3111572265625	2	567.303124	1132.5917	0.30156	0.00017107	0.30581	0.00017348	0.60736	0.00034456	567.3033776099176	106.32	0.72684	105.06	104.8	105.53	-1.267					22	13	2	0	0	0	0.027021	1	7471	7471		15.642	0	1	33580			59450	7954	49010	49056	65258	65258					0.030703159943413993
VFEFDVIN	8	Unmodified	_VFEFDVIN_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.7653503417969	2	491.74765	981.480748	0.30026	0.00014765	-3.2579	-0.0016021	-2.9576	-0.0014544	491.74595568107384	72.409	0.47263	72.409	72.291	72.764	0					14	11	2	0	0	0	0.028476	1	7040	7040		27.882	10.517	1	174950			59451	5891	49011	49057	65259	65259					-0.010733237137060314
VFEFDVIN	8	Unmodified	_VFEFDVIN_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	491.74765	981.480748	0.071979	3.5395E-05	-2.8035	-0.0013786	-2.7316	-0.0013432	491.7456904274329	74.569	0.82999	72.597	72.324	73.154	-1.9711	0.093992	0.00028265	NaN	20.947	18	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12245			59452	5891	49011	49057							-0.010733237137060314
VFEGVLVRA	9	Unmodified	_VFEGVLVRA_					0	0	0			REV__ENSG00000059378|ENST00000263549|PARP12	REV__ENSG00000059378|ENST00000263549|PARP12	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.7679748535156	2	495.292559	988.570566	2.6057	0.0012906	-1.9257	-0.00095376	0.68002	0.00033681	495.2919895839013	90.309	0.19545	90.309	90.186	90.382	0					7	4	2	0	0	0	0.027462	1	9682	9682		53.351	12.573	1	150130	+		59453	16733	49012	49058	65260	65260					0.0758235068550448
VFERVYYLI	9	Unmodified	_VFERVYYLI_					0	0	0			REV__nc|ENSG00000129810|Q5FBB7-7|SGO1	REV__nc|ENSG00000129810|Q5FBB7-7|SGO1	MULTI-SECPEP	OvCa99_classI_Rep5	1	601.305419921875	2	601.334424	1200.6543	1.5122	0.00090932	-0.58061	-0.00034914	0.93157	0.00056019	601.8359130451975	149.72	0.44525	149.72	149.55	149.99	0					14	8	3	0	0	0	0.027425	1	17557	17557		47.657	5.2612	1	33014	+		59454	28846	49013	49059	65261	65261					0.06199462062568273
VFFDDVQVI	9	Unmodified	_VFFDDVQVI_					0	0	0		tr|A0A7D6VSL7|A0A7D6VSL7_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23255PE=4SV=1	tr|A0A7D6VSL7|A0A7D6VSL7_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23255PE=4SV=1	tr|A0A7D6VSL7|A0A7D6VSL7_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23255PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.8063354492188	2	541.281857	1080.54916	0.6209	0.00033608	-3.4982	-0.0018935	-2.8773	-0.0015574	541.2797933231345	84.992	0.39536	82.346	82.215	82.61	-2.6463					10	7	2	0	0	0	0.027447	1	7160	7160		56.721	26.88	1	65623			59455	35035	49014	49060	65262	65262					0.012109208661513549
VFFFCCVSAR	10	Unmodified	_VFFFCCVSAR_					0	0	0		L1PA8A_dup160|chr1:247133953-247136664:+|1.5135014545884105|0.4971293307696565|1.61|429.0|133|2|anti-sense	L1PA8A_dup160|chr1:247133953-247136664:+|1.5135014545884105|0.4971293307696565|1.61|429.0|133|2|anti-sense	L1PA8A_dup160|chr1:247133953-247136664:+|1.5135014545884105|0.4971293307696565|1.61|429.0|133|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.7778930664062	2	589.777905	1177.54126	-1.6016	-0.00094457	3.4563	0.0020384	1.8547	0.0010939	589.7798878399616	126.92	1.9262	125.49	125.15	127.07	-1.4357					52	37	2	0	0	0	0.67931	1	12116	12116		32.812	3.6424	1	186430			59456	14768	49015	49061	65263	65263					-0.040412529266177444
VFFFFRRVQV	10	Unmodified	_VFFFFRRVQV_					0	0	0		ENSG00000179165|ENST00000454782|PXT1	ENSG00000179165|ENST00000454782|PXT1	ENSG00000179165|ENST00000454782|PXT1	MSMS	OvCa9_classI_Rep2	2	448.9252624511719	3	448.92403	1343.75026	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.676	1	25.967	25.467	26.467	-2.7097								0	0	0	0.14088	1	618	618		22.58	0.79923	1				59457	7809	49016	49062	65264	65264					0.09213654693303397
VFFFGLSIIL	10	Unmodified	_VFFFGLSIIL_					0	0	0			REV__ENSG00000165794|ENST00000298681|SLC39A2	REV__ENSG00000165794|ENST00000298681|SLC39A2	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.318603515625	2	578.344261	1154.67397	0.12668	7.3264E-05	4.0706	0.0023542	4.1973	0.0024275	578.3464138434332	81.228	0.25102	81.228	81.037	81.288	0					7	5	2	0	0	0	0.026697	1	8369	8369		37.159	10.363	1	110310	+		59458	21116	49017	49063	65265	65265					0.10281838073365179
VFFFGYVLF	9	Unmodified	_VFFFGYVLF_					0	0	0		L1PB1_dup435|chr1:148902763-148905178:-|1.8547645190966555|0.2878265206874703|2.69|429.0|125|2|anti-sense	L1PB1_dup435|chr1:148902763-148905178:-|1.8547645190966555|0.2878265206874703|2.69|429.0|125|2|anti-sense	L1PB1_dup435|chr1:148902763-148905178:-|1.8547645190966555|0.2878265206874703|2.69|429.0|125|2|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	569.807861328125	2	569.802229	1137.5899	1.2083	0.00068847	1.8208	0.0010375	3.0291	0.001726	569.8015066811995	131.23	1.1369	131.23	130.58	131.72	0					35	23	3	0	0	0	0.32242	1	15240	15240		60.404	17.929	1	152040			59459	14773	49018	49064	65266	65266					0.026613069764152897
VFFILKNKVM	10	Unmodified	_VFFILKNKVM_					0	0	0		nc|ENSG00000169031|Q01955-2|COL4A3	nc|ENSG00000169031|Q01955-2|COL4A3	nc|ENSG00000169031|Q01955-2|COL4A3	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8693237304688	2	619.87012	1237.72569	-1.8762	-0.001163	0.78566	0.000487	-1.0905	-0.00067597	619.8704234308321	147.79	3.8764	146.35	144.25	148.12	-1.4351					189	77	4	0	0	0	0.69986	1	14620	14620		30.504	4.9296	1	269210			59460	15170	49019	49065	65267	65267					0.11633258495589871
VFFKGFKW	8	Unmodified	_VFFKGFKW_					0	0	0		ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	ENSG00000119013|ENST00000237889|NDUFB3	MULTI-MSMS	OvCa99_classI_Rep5	1	529.7968139648438	2	529.794738	1057.57492	-1.9668	-0.001042	1.1013	0.00058345	-0.86557	-0.00045857	529.7947537790475	104.36	1.2747	104.36	103.55	104.83	0					44	21	4	0	0	0	0.53531	1	11690	11690		73.975	8.1716	1	1999700			59461	3338	49020	49066	65268	65268					0.048438598990969695
VFFLFFFL	8	Unmodified	_VFFLFFFL_					0	0	0			REV__nc|ENSG00000284680|Q96RD0|OR8B2	REV__nc|ENSG00000284680|Q96RD0|OR8B2	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3028564453125	2	540.301865	1078.58918	-1.3439	-0.00072612	3.0288	0.0016365	1.6849	0.00091034	540.3033043083178	124.06	1.3781	122.67	122.37	123.75	-1.3908					61	26	4	0	0	0	0.69862	1	11742	11742		43.626	0	1	233120	+		59462	29199	49021	49067	65269	65269					0.053025123273755526
VFFPRKRTL	9	Unmodified	_VFFPRKRTL_					0	0	0			REV__ENST00000078429.8_1_19:3122902-3123160:+|nuORF	REV__ENST00000078429.8_1_19:3122902-3123160:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	582.8599243164062	2	582.356025	1162.6975	0.028574	1.664E-05	2.4006	0.001398	2.4291	0.0014146	582.3572078090978	164.27	1.1813	164.27	163.8	164.98	0					70	44	2	0	0	0	0.65476	1	19181	19181		25.45	1.2474	1	30700	+		59463	23677	49022	49068	65270	65270					0.12265696630515777
VFFRPRPK	8	Unmodified	_VFFRPRPK_					0	0	0		ENST00000315302.6_1_4:183064290-183064563:-|nuORF	ENST00000315302.6_1_4:183064290-183064563:-|nuORF	ENST00000315302.6_1_4:183064290-183064563:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7754516601562	2	523.816536	1045.61852	2.0301	0.0010634	3.9976	0.002094	6.0277	0.0031574	523.8186882789613	97.995	0.21393	97.995	97.823	98.037	0					7	4	2	0	0	0	0.028476	1	10772	10772		13.775	1.5685	1	68444			59464	10332	49023	49069	65271	65271					0.09753469396218861
VFFWWLNPL	9	Unmodified	_VFFWWLNPL_					0	0	0		ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-2|ABCC4;ABCC4-UPF3A|1|fusion;nc|ENSG00000125257|O15439-4|ABCC4;nc|ENSG00000125257|O15439-3|ABCC4	ENSG00000125257|ENST00000645237|ABCC4;nc|ENSG00000125257|O15439-4|ABCC4	ENSG00000125257|ENST00000645237|ABCC4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	611.3523559570312	2	611.326402	1220.63825	-1.5745	-0.00096253	-0.034837	-2.1297E-05	-1.6093	-0.00098383	611.3261496354351	148.29	2.0974	146.86	145.78	147.87	-1.4351					86	42	3	0	0	0	0.027462	1	14586	14586		20.482	0	1	55008			59465	3695;15001	49024	49070	65272	65272					0.03675800616338165
VFGASLFLLL	10	Unmodified	_VFGASLFLLL_					0	0	0		nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4;ENSG00000115310|ENST00000337526|RTN4;nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-5|RTN4;RTN4-KIAA0196|2|fusion;RTN4-KIAA0196|1|fusion	nc|ENSG00000115310|Q9NQC3-4|RTN4;RTN4-KIAA0196|2|fusion	nc|ENSG00000115310|Q9NQC3-4|RTN4	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3341674804688	2	540.328611	1078.64267	2.2836	0.0012339	3.9102	0.0021128	6.1938	0.0033467	540.3305756334044	111.82	1.4803	110.72	110.35	111.83	-1.1038					62	29	3	0	0	0	0.47435	1	8144	8144		57.811	2.3071	1	208000			59466	3085;32793	49025	49071	65273	65273					0.1064926503922834
VFGEINKQI	9	Unmodified	_VFGEINKQI_					0	0	0		tr|A0A7D6VNY2|A0A7D6VNY2_9CLOTTypeIIsecretionsystemFfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20245PE=3SV=1	tr|A0A7D6VNY2|A0A7D6VNY2_9CLOTTypeIIsecretionsystemFfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20245PE=3SV=1	tr|A0A7D6VNY2|A0A7D6VNY2_9CLOTTypeIIsecretionsystemFfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20245PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	524.291015625	2	524.295299	1046.57605	-0.99087	-0.00051951	1.1997	0.000629	0.20884	0.00010949	524.2958937271763	117.65	1.4861	116.61	116.39	117.88	-1.0324					59	29	5	0	0	0	0.068524	1	8867	8867		108.09	11.897	1	844470			59467	34737	49026	49072	65274	65274					0.05462029477325814
VFGHFYKTL	9	Unmodified	_VFGHFYKTL_					0	0	0			REV__nc|ENSG00000100888|Q9HCK8-2|CHD8	REV__nc|ENSG00000100888|Q9HCK8-2|CHD8	MULTI-MSMS	OvCa9_classI_Rep3	3	556.296142578125	2	556.300384	1110.58622	-3.9321	-0.0021874	-1.8803	-0.001046	-5.8124	-0.0032335	556.2991914868587	146.26	1.5443	145.3	144.9	146.44	-0.95946					66	30	3	0	0	0	0.48324	1	12279	12279		44.117	6.9577	1	177360	+		59468	17456	49027	49073	65275	65275					0.03534637202551494
VFGHFYKTL	9	Unmodified	_VFGHFYKTL_					0	0	0			REV__nc|ENSG00000100888|Q9HCK8-2|CHD8	REV__nc|ENSG00000100888|Q9HCK8-2|CHD8	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	556.300384	1110.58622	-1.6853	-0.00093754	-4.1904	-0.0023311	-5.8757	-0.0032687	556.2978707720932	145.91	1.2406	145.68	145.33	146.57	-0.22696	0.28109	-0.00084841	NaN	44.117	55	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88978	+		59469	17456	49027	49073							0.03534637202551494
VFGHLYTILT	10	Unmodified	_VFGHLYTILT_					0	0	0		nc|ENSG00000128654|O75431-2|MTX2;ENST00000420864.5_1_2:177135134-177202389:+|nuORF;ENSG00000128654|ENST00000249442|MTX2	nc|ENSG00000128654|O75431-2|MTX2	nc|ENSG00000128654|O75431-2|MTX2	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.8096313476562	2	582.326599	1162.63865	1.8164	0.0010577	2.4992	0.0014553	4.3156	0.0025131	582.828879549432	108.39	0.4283	108.39	108.2	108.63	0					15	9	2	0	0	0	0.026752	1	12240	12240		44.117	0	1	126360			59470	3898	49028	49074	65276	65276					0.06383175545511222
VFGIAEPIAL	10	Unmodified	_VFGIAEPIAL_					0	0	0			REV__ENSG00000151617|ENST00000651419|EDNRA	REV__ENSG00000151617|ENST00000651419|EDNRA	MULTI-MSMS	OvCa9_classI_Rep2	2	515.296875	2	515.302593	1028.59063	-0.71327	-0.00036755	-2.5549	-0.0013165	-3.2681	-0.0016841	515.3010385104841	103.22	1.4324	102.53	102.23	103.66	-0.68459					89	28	4	0	0	0	0.50656	1	9515	9515		53.351	0.41475	1	289490	+		59471	20243	49029	49075	65277	65277					0.07748101625452364
VFGKEVTLE	9	Unmodified	_VFGKEVTLE_					0	0	0		ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	ENSG00000184898|ENST00000331426|RBM43	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.2696533203125	2	511.281857	1020.54916	-0.0020758	-1.0613E-06	-0.64678	-0.00033069	-0.64885	-0.00033175	511.28144759515357	89.269	1.4398	86.666	86.385	87.825	-2.6027					45	28	3	0	0	0	0.027402	1	7627	7627		87.754	31.321	1	106880			59472	8200	49030	49076	65278	65278					0.03970920866140659
VFGKNILTE	9	Unmodified	_VFGKNILTE_					0	0	0			REV__DARS-R3HDM1|1|fusion	REV__DARS-R3HDM1|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.220703125	2	510.78985	1019.56515	1.5856	0.00080993	-0.35037	-0.00017896	1.2353	0.00063097	511.2914641205565	138.21	1.2527	138.21	137.97	139.22	0					34	25	2	0	0	0	0.027433	1	16205	16205		17.468	0	1	43535	+		59473	16267	49031	49077	65279	65279					0.05614627103034309
VFGLIGAVFVI	11	Unmodified	_VFGLIGAVFVI_					0	0	0			REV__tr|A0A553SKZ1|A0A553SKZ1_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_19630PE=3SV=1	REV__tr|A0A553SKZ1|A0A553SKZ1_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_19630PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.31298828125	2	567.84971	1133.68487	2.8311	0.0016077	-3.6765	-0.0020877	-0.8454	-0.00048006	567.8475136215519	89.343	0.24155	89.343	89.193	89.435	0					8	5	2	0	0	0	0.025902	1	9535	9535		11.511	0	1	232470	+		59474	30169	49032	49078	65280	65280					0.12337240447595832
VFGLILGVIK	10	Unmodified	_VFGLILGVIK_					0	0	0			REV__tr|A0A553SR70|A0A553SR70_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_00520PE=3SV=1	REV__tr|A0A553SR70|A0A553SR70_NIACIDMTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_00520PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	529.85400390625	2	529.852253	1057.68995	0.98215	0.0005204	1.3628	0.00072211	2.345	0.0012425	529.8527884735163	132.6	0.89706	132.6	132.23	133.13	0					49	18	4	0	0	0	0.62668	1	15426	15426		38.806	1.647	1	244740	+		59475	30698	49033	49079	65281	65281					0.16341544310216705
VFGLLITAAP	10	Unmodified	_VFGLLITAAP_					0	0	0		tr|A0A7D7ADP1|A0A7D7ADP1_9CLOTOFAfamilyMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23610PE=4SV=1	tr|A0A7D7ADP1|A0A7D7ADP1_9CLOTOFAfamilyMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23610PE=4SV=1	tr|A0A7D7ADP1|A0A7D7ADP1_9CLOTOFAfamilyMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23610PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	501.30291748046875	2	501.305136	1000.59572	-0.60395	-0.00030276	-2.6332	-0.00132	-3.2371	-0.0016228	501.3036625968001	45.316	1.7944	42.606	42.199	43.993	-2.7097					88	35	4	0	0	0	0.73286	1	2650	2650		26.796	3.7536	1	439250			59476	36241	49034	49080	65282	65282					0.09544405488077246
VFGTILVAI	9	Unmodified	_VFGTILVAI_					0	0	0			REV__ENSG00000251154|ENST00000509356|PTTG1IP2	REV__ENSG00000251154|ENST00000509356|PTTG1IP2	MULTI-SECPEP	OvCa9_classI_Rep2	2	467.2742004394531	2	466.794404	931.574254	-0.6208	-0.00028979	0.4292	0.00020035	-0.1916	-8.944E-05	466.79451929968087	115.4	1.2356	115.28	114.85	116.08	-0.11777					38	24	2	0	0	0	0.027462	1	11052	11052		42.474	8.9589	1	34229	+		59477	23497	49035	49081	65283	65283					0.10573020459389681
VFGTILVAI	9	Unmodified	_VFGTILVAI_					0	0	0			REV__ENSG00000251154|ENST00000509356|PTTG1IP2	REV__ENSG00000251154|ENST00000509356|PTTG1IP2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	466.794404	931.574254	-0.58405	-0.00027263	0.25066	0.00011701	-0.33339	-0.00015562	466.79449778683846	116.34	0.93854	115.3	114.9	115.84	-1.0414	0.016152	0.00013764	NaN	42.474	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29882	+		59478	23497	49035	49081							0.10573020459389681
VFGTILVAI	9	Unmodified	_VFGTILVAI_					0	0	0			REV__ENSG00000251154|ENST00000509356|PTTG1IP2	REV__ENSG00000251154|ENST00000509356|PTTG1IP2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	466.794404	931.574254	-0.081923	-3.8241E-05	-0.2833	-0.00013224	-0.36522	-0.00017048	466.79422495599573	116.64	2.126	115.27	114.75	116.87	-1.3645	-0.013218	-0.00036086	NaN	42.474	59	40	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44819	+		59479	23497	49035	49081							0.10573020459389681
VFGVMWIV	8	Oxidation (M)	_VFGVM(Oxidation (M))WIV_		VFGVM(1)WIV		VFGVM(55)WIV	0	0	1			REV__tr|A0A7D6VV88|A0A7D6VV88_9CLOTDUF4825domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23445PE=4SV=1	REV__tr|A0A7D6VV88|A0A7D6VV88_9CLOTDUF4825domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23445PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	483.7580261230469	2	483.759507	965.50446	1.787	0.00086446	-2.8433	-0.0013755	-1.0564	-0.00051102	483.75798479305814	134.7	2.7244	134.7	134.34	137.06	0					135	58	4	0	0	0	0.64315	1	15634	15634		54.895	24.391	1	4346500	+		59480	31709	49036	49082	65284	65284		702			0.020328185191146986
VFGYHGYTF	9	Unmodified	_VFGYHGYTF_					0	0	0		nc|ENSG00000142230|Q9UBE0-2|SAE1;nc|ENSG00000142230|Q9UBE0-3|SAE1;ENSG00000142230|ENST00000270225|SAE1	nc|ENSG00000142230|Q9UBE0-2|SAE1	nc|ENSG00000142230|Q9UBE0-2|SAE1	MULTI-MSMS	OvCa99_classI_Rep5	1	545.7545166015625	2	545.753267	1089.49198	-1.0301	-0.00056218	-0.68261	-0.00037254	-1.7127	-0.00093472	545.752344790234	103.6	1.4775	103.6	103.22	104.7	0					60	34	4	0	0	0	0.1595	1	11586	11586		83.287	16.858	1	1240400			59481	4963	49037	49083	65285	65285					-0.049185016195679054
VFGYNCICI	9	Unmodified	_VFGYNCICI_					0	0	0			REV__nc|ENSG00000106868|Q6UWL2-3|SUSD1	REV__nc|ENSG00000106868|Q6UWL2-3|SUSD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.769287109375	2	516.238081	1030.46161	0.24094	0.00012438	4.4687	0.0023069	4.7097	0.0024313	516.2404085283246	72.498	0.73313	72.498	71.877	72.61	0					20	17	2	0	0	0	0.027462	1	7063	7063		42.474	0	1	191800	+		59482	17830	49038	49084	65286	65286					-0.05240319600648036
VFHIRSGL	8	Unmodified	_VFHIRSGL_					0	0	0			REV__tr|A0A7D6ZZN7|A0A7D6ZZN7_9CLOTMannonatedehydrataseOS=ClostridiumintestinaleOX=36845GN=uxuAPE=3SV=1	REV__tr|A0A7D6ZZN7|A0A7D6ZZN7_9CLOTMannonatedehydrataseOS=ClostridiumintestinaleOX=36845GN=uxuAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	464.77294921875	2	464.771794	927.529036	0.010658	4.9535E-06	-0.3484	-0.00016193	-0.33774	-0.00015697	464.77154826400294	52.883	1.5238	52.883	52.566	54.089	0					98	35	4	0	0	0	0.66704	1	4198	4198		50.025	2.1089	1	10355000	+		59483	32416	49039	49085	65287	65287					0.06237214716861672
VFHITTGS	8	Unmodified	_VFHITTGS_					0	0	0		nc|ENSG00000100206|Q14565-2|DMC1;ENSG00000100206|ENST00000216024|DMC1	nc|ENSG00000100206|Q14565-2|DMC1	nc|ENSG00000100206|Q14565-2|DMC1	MULTI-SECPEP	OvCa9_classI_Rep2	2	430.7581787109375	2	431.226885	860.439217	0.13289	5.7306E-05	1.603	0.00069128	1.7359	0.00074858	431.2277890005156	71.141	0.2616	68.634	68.437	68.699	-2.5072					5	4	2	0	0	0	0.028476	1	5694	5694		35.201	8.4046	1	5304.3			59484	2024	49040	49086	65288	65288					0.0034154031760635917
VFHLCFYL	8	Unmodified	_VFHLCFYL_					0	0	0			REV__L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|322|3|anti-sense	REV__L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|322|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.830322265625	2	521.264956	1040.51536	0.49258	0.00025676	1.4823	0.00077268	1.9749	0.0010294	521.265522071542	105.9	0.73077	104.55	104.35	105.08	-1.3482					25	13	2	0	0	0	0.028476	1	7494	7494		33.493	21.286	1	20693	+		59485	28348	49041	49087	65289	65289					-0.003277791066238933
VFHLCFYL	8	Unmodified	_VFHLCFYL_					0	0	0			REV__L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|322|3|anti-sense	REV__L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|322|3|anti-sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.264956	1040.51536	-0.11227	-5.8524E-05	2.7207	0.0014182	2.6084	0.0013597	521.2664337632733	105.1	0.64439	104.66	104.5	105.15	-0.43642	0.041664	3.4608E-05	NaN	33.493	25	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21202	+		59486	28348	49041	49087							-0.003277791066238933
VFHLNYIN	8	Unmodified	_VFHLNYIN_					0	0	0			REV__tr|A0A553SS06|A0A553SS06_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_02195PE=4SV=1	REV__tr|A0A553SS06|A0A553SS06_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_02195PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.2358093261719	2	510.269084	1018.52362	0.14354	7.3242E-05	2.3801	0.0012145	2.5236	0.0012877	510.269711064257	70.904	0.7473	70.904	70.641	71.389	0					28	18	3	0	0	0	0.028476	1	6823	6823		52.299	0	1	531140	+		59487	30786	49042	49088	65290	65290					0.015094911343680906
VFHLVMPL	8	Unmodified	_VFHLVMPL_					0	0	0		ENSG00000119720|ENST00000354366|NRDE2	ENSG00000119720|ENST00000354366|NRDE2	ENSG00000119720|ENST00000354366|NRDE2	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.7914733886719	2	478.275324	954.536095	2.1908	0.0010478	2.3136	0.0011065	4.5044	0.0021544	478.2757431103348	85.71	0.36905	85.71	85.585	85.954	0					9	8	2	0	0	0	0.028476	1	8989	8989		16.705	0	1	109200			59488	3391	49043	49089	65291	65291					0.0570081127306139
VFHLYEKL	8	Unmodified	_VFHLYEKL_					0	0	0			REV__nc|ENSG00000111859|Q14511-3|NEDD9	REV__nc|ENSG00000111859|Q14511-3|NEDD9	MULTI-MSMS	OvCa99_classI_Rep5	1	524.79541015625	2	524.794935	1047.57532	0.49507	0.00025981	-2.042	-0.0010716	-1.5469	-0.00081181	524.7935645406973	151.5	0.49924	151.5	151.2	151.7	0					15	9	2	0	0	0	0.72922	1	17741	17741		37.028	1.8278	1	46101	+		59489	18065	49044	49090	65292	65292					0.05343234828274035
VFHPRQELI	9	Unmodified	_VFHPRQELI_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA;COPA|p.H613Tfs*3|1|0.05|ENSG00000122218|chr1:160298986-160298986|C/-|frameshift_variant	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	OvCa99_classI_Rep5	1	569.8236694335938	2	569.822015	1137.62948	-0.69082	-0.00039365	0.83962	0.00047843	0.1488	8.4787E-05	569.8222893037168	68.159	0.60704	68.159	67.916	68.523	0					41	14	4	0	0	0	0.094616	1	6419	6419		98.629	0.047388	1	4432900			59490	3523	49045	49091	65293	65293					0.06616826979848156
VFHSKAVEL	9	Unmodified	_VFHSKAVEL_					0	0	0			REV__ENST00000565493.1_1_20:34637479-34637734:-|nuORF	REV__ENST00000565493.1_1_20:34637479-34637734:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2794189453125	2	515.290017	1028.56548	1.71	0.00088116	-1.0008	-0.00051569	0.70925	0.00036547	515.2893259814424	87.219	0.44952	87.219	87.013	87.463	0					16	10	2	0	0	0	0.027462	1	9227	9227		27.882	1.1893	1	364840	+		59491	27687	49046	49092	65294	65294					0.05234046822897653
VFHSKAVEL	9	Unmodified	_VFHSKAVEL_					0	0	0			REV__ENST00000565493.1_1_20:34637479-34637734:-|nuORF	REV__ENST00000565493.1_1_20:34637479-34637734:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.290017	1028.56548	1.8538	0.00095527	-1.1218	-0.00057804	0.73206	0.00037722	515.2884915125298	88.705	0.93476	87.338	86.987	87.922	-1.3676	0.007716	-0.0013796	NaN	27.882	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37214	+		59492	27687	49046	49092							0.05234046822897653
VFHSKAVEL	9	Unmodified	_VFHSKAVEL_					0	0	0			REV__ENST00000565493.1_1_20:34637479-34637734:-|nuORF	REV__ENST00000565493.1_1_20:34637479-34637734:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	515.290017	1028.56548	0.0028205	1.4534E-06	1.2156	0.00062638	1.2184	0.00062784	515.2897751997306	89.494	1.3157	87.413	86.995	88.31	-2.0805	0.082993	0.0010293	NaN	27.882	37	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75460	+		59493	27687	49046	49092							0.05234046822897653
VFHSKAVEL	9	Unmodified	_VFHSKAVEL_					0	0	0			REV__ENST00000565493.1_1_20:34637479-34637734:-|nuORF	REV__ENST00000565493.1_1_20:34637479-34637734:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	515.290017	1028.56548	0.36522	0.00018819	0.64686	0.00033332	1.0121	0.00052151	515.7923273417008	89.925	1.2078	87.35	86.851	88.058	-2.575	0.019897	0.00044314	NaN	27.882	32	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67028	+		59494	27687	49046	49092							0.05234046822897653
VFHSPVGVGGW	11	Unmodified	_VFHSPVGVGGW_					0	0	0		ENSG00000150893|ENST00000280481|FREM2	ENSG00000150893|ENST00000280481|FREM2	ENSG00000150893|ENST00000280481|FREM2	MULTI-MSMS	OvCa99_classI_Rep5	1	571.2914428710938	2	571.293091	1140.57163	0.96711	0.0005525	-1.9622	-0.001121	-0.99511	-0.0005685	571.2918730266416	150.66	0.59984	150.66	150.34	150.94	0					25	11	3	0	0	0	0.69081	1	17656	17656		32.812	2.3088	1	103520			59495	5522	49047	49093	65295	65295					0.006965650544316304
VFHTVASRTQL	11	Unmodified	_VFHTVASRTQL_					0	0	0		ENSG00000023287|ENST00000025008|RB1CC1;nc|ENSG00000023287|Q8TDY2-2|RB1CC1	ENSG00000023287|ENST00000025008|RB1CC1	ENSG00000023287|ENST00000025008|RB1CC1	MULTI-MSMS	OvCa9_classI_Rep3	3	420.2353515625	3	420.234933	1257.68297	-0.48401	-0.0002034	-0.11454	-4.8134E-05	-0.59855	-0.00025153	420.2348652404624	92.172	2.6968	90.147	89.584	92.281	-2.0241					147	54	4	0	0	0	0.63942	1	5845	5845		41.08	0	1	1866100			59496	1037	49048	49094	65296	65296					0.06443579691699597
VFHVKEAAL	9	Unmodified	_VFHVKEAAL_					0	0	0			REV__tr|A0A553SJZ2|A0A553SJZ2_NIACIDNApolymeraseIIIsubunitalphaOS=NialliacirculansOX=1397GN=CEQ21_17785PE=3SV=1	REV__tr|A0A553SJZ2|A0A553SJZ2_NIACIDNApolymeraseIIIsubunitalphaOS=NialliacirculansOX=1397GN=CEQ21_17785PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.841064453125	2	507.292559	1012.57057	0.4756	0.00024127	-0.58127	-0.00029488	-0.10567	-5.3607E-05	507.29226202220127	110.52	2.2631	108.91	108.28	110.54	-1.6011					95	42	4	0	0	0	0.027448	1	10239	10239		53.351	0	1	396390	+		59497	30059	49049	49095	65297	65297					0.06478350685517853
VFIDKQTNL	9	Unmodified	_VFIDKQTNL_					0	0	0		nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2	nc|ENSG00000149187|Q92879-5|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	MULTI-MSMS	OvCa99_classI_Rep5	1	539.3010864257812	2	539.300581	1076.58661	2.1157	0.001141	-1.4549	-0.00078462	0.66083	0.00035639	539.2996242141986	78.313	1.5061	78.313	77.968	79.474	0					106	36	5	0	0	0	0.023079	2	7942	7912;7942		143.37	30.195	1	39372000			59498	1160	49050	49096	65298;65299	65299					0.05138012131760661
VFIDKQTNL	9	Unmodified	_VFIDKQTNL_					0	0	0		nc|ENSG00000149187|Q92879-5|CELF1;nc|ENSG00000149187|Q92879-2|CELF1;nc|ENSG00000149187|Q92879-3|CELF1;nc|ENSG00000149187|Q92879-6|CELF1;nc|ENSG00000149187|Q92879|CELF1;nc|ENSG00000048740|O95319-5|CELF2;nc|ENSG00000048740|O95319-2|CELF2;nc|ENSG00000048740|O95319|CELF2;nc|ENSG00000048740|O95319-4|CELF2;nc|ENSG00000149187|Q92879-4|CELF1;ENSG00000149187|ENST00000687097|CELF1;nc|ENSG00000048740|O95319-3|CELF2;ENSG00000048740|ENST00000633077|CELF2	nc|ENSG00000149187|Q92879-5|CELF1	nc|ENSG00000149187|Q92879-5|CELF1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	539.300581	1076.58661	0.92918	0.00050111	-4.0958	-0.0022088	-3.1666	-0.0017077	539.2981981152001	80.466	0.85725	78.143	77.48	78.337	-2.3226	-0.085033	-0.0025755	NaN	143.37	27	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45980			59499	1160	49050	49096							0.05138012131760661
VFIDWVLE	8	Unmodified	_VFIDWVLE_					0	0	0		ENSG00000144362|ENST00000359744|PHOSPHO2	ENSG00000144362|ENST00000359744|PHOSPHO2	ENSG00000144362|ENST00000359744|PHOSPHO2	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.220703125	2	510.773668	1019.53278	1.3421	0.0006855	-0.54227	-0.00027698	0.79981	0.00040852	510.77191068391227	138.71	0.62268	138.71	138.4	139.03	0					18	12	2	0	0	0	0.028476	1	16205	16205		29.15	0	1	36591			59500	5145	49051	49097	65300	65300					0.02379839700051889
VFIETKIYKT	10	Unmodified	_VFIETKIYKT_					0	0	0			REV__ENST00000271628.8_1_1:149899933-149900005:-|nuORF	REV__ENST00000271628.8_1_1:149899933-149900005:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	621.3615112304688	2	621.360639	1240.70673	2.0456	0.0012711	1.1262	0.00069978	3.1718	0.0019708	621.3611905465596	106.25	1.4022	106.25	105.62	107.02	0					76	31	5	0	0	0	0.57535	1	11947	11947		45.022	2.1579	1	2539900	+		59501	24073	49052	49098	65301	65301					0.09600000405498577
VFIFDYVD	8	Unmodified	_VFIFDYVD_					0	0	0			REV__tr|A0A7D6ZUK1|A0A7D6ZUK1_9CLOTKetopantoatereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12240PE=4SV=1	REV__tr|A0A7D6ZUK1|A0A7D6ZUK1_9CLOTKetopantoatereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12240PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.8199462890625	2	509.250026	1016.4855	1.6893	0.00086026	-0.29254	-0.00014898	1.3967	0.00071128	509.2497687878625	83.005	0.5989	83.005	82.694	83.293	0					30	13	3	0	0	0	0.028476	1	8600	8600		21.702	0	1	561520	+		59502	32222	49053	49099	65302	65302					-0.02208439570961218
VFIFEYLSPV	10	Unmodified	_VFIFEYLSPV_					0	0	0		ENSG00000105464|ENST00000263269|GRIN2D;GRIN2D|p.S691Lfs*18|1|0.08|ENSG00000105464|chr19:48419795-48419795|C/-|frameshift_variant;RHPN2-GRIN2D|1|fusion	ENSG00000105464|ENST00000263269|GRIN2D;RHPN2-GRIN2D|1|fusion	RHPN2-GRIN2D|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	606.3298950195312	2	607.328808	1212.64306	1.836	0.0011151	-2.7751	-0.0016854	-0.93902	-0.00057029	607.3273961084969	129.88	0.66492	129.88	129.72	130.39	0					25	13	3	0	0	0	0.026982	1	15047	15047		10.866	0	1	115130			59503	32786;2461	49054	49100	65303	65303					0.04524639968394695
VFIFPNKLK	9	Unmodified	_VFIFPNKLK_					0	0	0		nc|ENSG00000124786|Q9H1N7-3|SLC35B3	nc|ENSG00000124786|Q9H1N7-3|SLC35B3	nc|ENSG00000124786|Q9H1N7-3|SLC35B3	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.3230590820312	2	553.342052	1104.66955	-0.291	-0.00016102	-2.0722	-0.0011466	-2.3632	-0.0013077	553.3404759970175	67.623	0.19339	67.623	67.489	67.683	0					5	4	2	0	0	0	0.027462	1	6326	6326		31.955	0	1	77146			59504	15000	49055	49101	65304	65304					0.12140373650390757
VFIGRYDD	8	Unmodified	_VFIGRYDD_					0	0	0		tr|A0A553SGA9|A0A553SGA9_NIACIDUF3139domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10520PE=4SV=1	tr|A0A553SGA9|A0A553SGA9_NIACIDUF3139domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10520PE=4SV=1	tr|A0A553SGA9|A0A553SGA9_NIACIDUF3139domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_10520PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.78369140625	2	492.742899	983.471246	0.83317	0.00041054	1.6118	0.00079422	2.445	0.0012048	492.7434652800952	83.331	0.46772	83.331	83.161	83.629	0					15	10	2	0	0	0	0.028476	1	8698	8698		71.378	11.084	1	162490			59505	33137	49056	49102	65305	65305					-0.02115091999246488
VFIIFVLLI	9	Unmodified	_VFIIFVLLI_					0	0	0			REV__ENSG00000205359|ENST00000506729|SLCO6A1	REV__ENSG00000205359|ENST00000506729|SLCO6A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.862060546875	2	538.859547	1075.70454	2.6704	0.0014389	2.5078	0.0013513	5.1781	0.0027903	538.8612720845362	133.45	7.6689	131.93	131.41	139.08	-1.5257					434	157	6	0	0	0	0.53728	1	13378	13378		39.021	0	1	17348000	+		59506	23213	49057	49103	65306	65306					0.16971616458386052
VFIITTLEL	9	Unmodified	_VFIITTLEL_					0	0	0		nc|ENSG00000157181|Q5SWX8-3|ODR4;nc|ENSG00000157181|Q5SWX8-2|ODR4;ENSG00000157181|ENST00000287859|ODR4	nc|ENSG00000157181|Q5SWX8-3|ODR4	nc|ENSG00000157181|Q5SWX8-3|ODR4	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.248779296875	2	524.818076	1047.6216	-0.085814	-4.5037E-05	-1.8526	-0.00097228	-1.9384	-0.0010173	524.8166647151185	58.11	0.42173	58.11	57.941	58.363	0					16	9	3	0	0	0	0.027462	1	4920	4920		27.882	17.617	1	203780			59507	5878	49058	49104	65307	65307					0.09969254939687744
VFIKSIVKV	9	Unmodified	_VFIKSIVKV_					0	0	0		tr|A0A7D6ZI02|A0A7D6ZI02_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05055PE=4SV=1	tr|A0A7D6ZI02|A0A7D6ZI02_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05055PE=4SV=1	tr|A0A7D6ZI02|A0A7D6ZI02_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05055PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.8270874023438	2	516.844428	1031.6743	0.59598	0.00030803	2.8471	0.0014715	3.4431	0.0017795	516.8461950934653	90.954	0.3192	90.954	90.816	91.135	0					11	7	2	0	0	0	0.027462	1	9784	9784		47.657	23.455	1	162200			59508	35597	49059	49105	65308	65308					0.1597325779316634
VFIKWIVTF	9	Unmodified	_VFIKWIVTF_					0	0	0		nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2;nc|ENSG00000188559|Q2PPJ7-2|RALGAPA2;ENSG00000188559|ENST00000202677|RALGAPA2;ENST00000424981.1_1_20:20616022-20621447:-|nuORF	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	nc|ENSG00000188559|Q2PPJ7-3|RALGAPA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	577.293212890625	2	576.844428	1151.6743	1.1752	0.00067788	-0.40553	-0.00023393	0.76963	0.00044396	576.843813859321	149.09	1.3241	149.09	148.67	149.99	0					65	26	3	0	0	0	0.027462	1	17443	17443		45.952	15.448	1	96230			59509	8478	49060	49106	65309	65309					0.10453257793164994
VFIKYLPEW	9	Unmodified	_VFIKYLPEW_					0	0	0		nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1;nc|ENSG00000288674|P49810-2|PSEN2;nc|ENSG00000288674|P49810-3|PSEN2;ENSG00000143801|ENST00000366783|PSEN2;nc|ENSG00000080815|P49768-7|PSEN1	nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1	nc|ENSG00000080815|P49768-7|PSEN1	MULTI-MSMS	OvCa99_classI_Rep5	1	597.8339233398438	2	597.831517	1193.64848	1.9112	0.0011426	0.25769	0.00015405	2.1689	0.0012966	597.8313962652186	129.38	1.5576	129.38	129.12	130.68	0					110	32	4	0	0	0	0.030815	2	15017	14993;15017		134.81	66.024	1	1050800			59510	1641;14901	49061	49107	65310;65311	65311					0.059403635508715524
VFILDARNI	9	Unmodified	_VFILDARNI_					0	0	0			REV__SRL|p.D216N|1|0.29|ENSG00000185739|chr16:4192929-4192929|C/T|missense_variant	REV__SRL|p.D216N|1|0.29|ENSG00000185739|chr16:4192929-4192929|C/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	530.8143920898438	2	530.811116	1059.60768	0.30695	0.00016293	2.7054	0.0014361	3.0124	0.001599	530.8123721680603	72.663	1.4181	72.663	72.374	73.792	0					71	35	4	0	0	0	0.1804	1	7087	7087		79.713	4.6693	1	4526000	+		59511	29454	49062	49108	65312	65312					0.0802602223127451
VFIMKKNTL	9	Unmodified	_VFIMKKNTL_					0	0	0			REV__nc|ENSG00000170509|Q7Z5P4-2|HSD17B13	REV__nc|ENSG00000170509|Q7Z5P4-2|HSD17B13	MULTI-MSMS	OvCa9_classI_Rep2	2	547.3267822265625	2	547.325545	1092.63654	-0.1345	-7.3618E-05	2.9942	0.0016388	2.8597	0.0015652	547.3271925205654	93.792	1.8234	92.692	92.225	94.048	-1.0995					97	35	4	0	0	0	0.38529	1	8395	8395		53.351	2.016	1	1121100	+		59512	21545	49063	49109	65313	65313					0.09392423536064598
VFINPGDFA	9	Unmodified	_VFINPGDFA_					0	0	0		tr|A0A553SJ97|A0A553SJ97_NIACICopper-exportingP-typeATPaseOS=NialliacirculansOX=1397GN=CEQ21_16430PE=3SV=1	tr|A0A553SJ97|A0A553SJ97_NIACICopper-exportingP-typeATPaseOS=NialliacirculansOX=1397GN=CEQ21_16430PE=3SV=1	tr|A0A553SJ97|A0A553SJ97_NIACICopper-exportingP-typeATPaseOS=NialliacirculansOX=1397GN=CEQ21_16430PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	490.24560546875	2	490.247818	978.481082	-1.2971	-0.00063592	-4.1064	-0.0020132	-5.4036	-0.0026491	490.24574571549454	62.48	3.0118	59.721	59.187	62.199	-2.7593					88	57	2	0	0	0	0.6653	1	4701	4701		24.203	1.1603	1	956700			59513	33479	49064	49110	65314	65314					-0.009019039938493734
VFISFKLCL	9	Unmodified	_VFISFKLCL_					0	0	0			REV__ENST00000262133.10_1_16:53480967-53485629:+|nuORF	REV__ENST00000262133.10_1_16:53480967-53485629:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.3135986328125	2	535.309364	1068.60417	-2.9644	-0.0015869	3.2094	0.001718	0.24496	0.00013113	535.3119148598201	108.15	1.7459	106.35	105.92	107.67	-1.7917					66	34	3	0	0	0	0.34496	1	9874	9874		57.811	11.859	1	117250	+		59514	23968	49065	49111	65315	65315					0.07261636133057436
VFISFKLCL	9	Unmodified	_VFISFKLCL_					0	0	0			REV__ENST00000262133.10_1_16:53480967-53485629:+|nuORF	REV__ENST00000262133.10_1_16:53480967-53485629:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	535.309364	1068.60417	1.1808	0.00063208	1.4075	0.00075343	2.5882	0.0013855	535.3099978284367	107.45	1.487	106.18	105.81	107.3	-1.267	-0.086777	-0.00011692	NaN	57.811	45	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105830	+		59515	23968	49065	49111							0.07261636133057436
VFISIYLIC	9	Unmodified	_VFISIYLIC_					0	0	0		tr|A0A7D6VXH3|A0A7D6VXH3_9CLOTCDP-alcoholphosphatidyltransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08635PE=3SV=1	tr|A0A7D6VXH3|A0A7D6VXH3_9CLOTCDP-alcoholphosphatidyltransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08635PE=3SV=1	tr|A0A7D6VXH3|A0A7D6VXH3_9CLOTCDP-alcoholphosphatidyltransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08635PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.3135986328125	2	535.801371	1069.58819	-3.1408	-0.0016828	2.7462	0.0014714	-0.39458	-0.00021141	535.8031419439254	108.07	0.244	106.19	106.02	106.26	-1.8785					7	4	2	0	0	0	0.027462	1	9874	9874		35.201	1.6851	1	18140			59516	35281	49066	49112	65316	65316					0.056179298961751556
VFISLPMEL	9	Unmodified	_VFISLPMEL_					0	0	0			REV__ENSG00000197651|ENST00000358859|CCER1	REV__ENSG00000197651|ENST00000358859|CCER1	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.7861328125	2	524.791004	1047.56745	-5.6375	-0.0029585	-2.1001	-0.0011021	-7.7375	-0.0040606	524.789776272221	156.64	0.66867	155.09	154.82	155.49	-1.545					36	19	3	0	0	0	0.67509	1	15484	15484		23.042	1.0826	1	32606	+		59517	22940	49067	49113	65317	65317					0.045573395165092734
VFISSSLNTF	10	Unmodified	_VFISSSLNTF_					0	0	0		ENST00000481742.1_1_19:36606435-36607215:+|nuORF;ENST00000392178.8_1_19:36606435-36612715:+|nuORF;ENSG00000105254|ENST00000221855|TBCB	ENST00000481742.1_1_19:36606435-36607215:+|nuORF	ENST00000481742.1_1_19:36606435-36607215:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	557.7963256835938	2	557.792589	1113.57063	2.158	0.0012037	-0.2609	-0.00014553	1.8971	0.0010582	557.7921159817597	129.31	0.74622	129.31	129.02	129.77	0					33	15	3	0	0	0	0.048965	1	14988	14988		129.42	28.169	1	340060			59518	2435	49068	49114	65318	65318					0.01838305894852965
VFIYGFLQLLI	11	Unmodified	_VFIYGFLQLLI_					0	0	0		tr|A0A553SNB0|A0A553SNB0_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_24135PE=4SV=1	tr|A0A553SNB0|A0A553SNB0_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_24135PE=4SV=1	tr|A0A553SNB0|A0A553SNB0_NIACINADHdehydrogenasesubunit6OS=NialliacirculansOX=1397GN=CEQ21_24135PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	442.6020812988281	3	442.600442	1324.7795	0.47843	0.00021175	2.7187	0.0012033	3.1971	0.0014151	442.60159734649346	49.766	2.5262	47.006	46.523	49.049	-2.7603					125	50	5	0	0	0	0.69424	1	3203	3203		31.634	0	1	549840			59519	33913	49069	49115	65319	65319					0.13009754198969858
VFIYQGVEMSF	11	Unmodified	_VFIYQGVEMSF_					0	0	0			REV__nc|ENSG00000007952|Q9Y5S8-3|NOX1	REV__nc|ENSG00000007952|Q9Y5S8-3|NOX1	MULTI-SECPEP	OvCa99_classI_Rep5	1	440.767333984375	3	440.54953	1318.62676	3.1351	0.0013812	-1.4933	-0.00065788	1.6418	0.00072329	440.5489576236959	81.998	0.44585	81.998	81.776	82.222	0					16	10	2	0	0	0	0.026079	1	8500	8500		19.263	0.73163	1	305830	+		59520	16442	49070	49116	65320	65320					-0.01980809259976013
VFKAKTSAPP	10	Unmodified	_VFKAKTSAPP_					0	0	0		ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	ENSG00000175820|ENST00000322527|CCDC168	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3038330078125	2	523.305667	1044.59678	-2.1227	-0.0011108	-1.8084	-0.00094634	-3.9311	-0.0020572	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.65434	1	11556	11556		35.618	5.3006	1	183010			59521	7566	49071	49117	65321	65321					0.07626619856978323
VFKEKHHSW	9	Unmodified	_VFKEKHHSW_					0	0	0		MUC16-RNASEH2B|1|fusion;MUC16-RNASEH2B|2|fusion;nc|ENSG00000136104|Q5TBB1-2|RNASEH2B;ENST00000495244.6_1_13:51502574-51530607:+|nuORF;ENSG00000136104|ENST00000336617|RNASEH2B;RNASEH2B|p.F194Lfs*20|1|0.13|ENSG00000136104|chr13:50945497-50945503|TTTTCTC/-|frameshift_variant	MUC16-RNASEH2B|1|fusion;RNASEH2B|p.F194Lfs*20|1|0.13|ENSG00000136104|chr13:50945497-50945503|TTTTCTC/-|frameshift_variant	MUC16-RNASEH2B|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	599.3115234375	2	599.311815	1196.60908	0.2482	0.00014875	-0.57197	-0.00034279	-0.32377	-0.00019404	599.3114258162587	32.378	0.73795	32.378	32.154	32.892	0					32	14	4	0	0	0	0.2077	1	1410	1410		75.043	22.107	1	354210			59522	14844;32787	49072	49118	65322	65322					0.01863656320051632
VFKELSKKM	9	Unmodified	_VFKELSKKM_					0	0	0			REV__nc|ENSG00000175054|Q13535-2|ATR	REV__nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.3257446289062	2	555.323002	1108.63145	0.66952	0.0003718	2.3593	0.0013102	3.0288	0.001682	555.3242686655811	83.812	1.7126	81.149	80.632	82.344	-2.6629					84	35	7	0	0	0	0.5811	1	6982	6982		34.173	1.3601	1	648290	+		59523	21866	49073	49119	65323	65323					0.0814811967343303
VFKELSKKM	9	Unmodified	_VFKELSKKM_					0	0	0			REV__nc|ENSG00000175054|Q13535-2|ATR	REV__nc|ENSG00000175054|Q13535-2|ATR	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.3279418945312	2	555.323002	1108.63145	1.7364	0.00096424	2.6162	0.0014529	4.3526	0.0024171	555.3243692772734	85.535	1.5268	82.888	82.411	83.937	-2.6463					80	30	4	0	0	0	0.5811	1	7196	7196		34.173	7.3764	1	734270	+		59524	21866	49073	49119	65324	65324					0.0814811967343303
VFKELSKKM	9	Unmodified	_VFKELSKKM_					0	0	0			REV__nc|ENSG00000175054|Q13535-2|ATR	REV__nc|ENSG00000175054|Q13535-2|ATR	MULTI-MATCH	OvCa9_classI_Rep2	2		2	555.323002	1108.63145	0.97143	0.00053946	1.9926	0.0011066	2.9641	0.001646	555.3239669247192	82.712	1.5777	81.113	80.593	82.171	-1.5989	-0.071368	-0.00051825	NaN	34.173	72	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	266040	+		59525	21866	49073	49119							0.0814811967343303
VFKELSKKM	9	Unmodified	_VFKELSKKM_					0	0	0			REV__nc|ENSG00000175054|Q13535-2|ATR	REV__nc|ENSG00000175054|Q13535-2|ATR	MULTI-MATCH	OvCa9_classI_Rep3	3		2	555.323002	1108.63145	-1.4447	-0.00080227	4.1427	0.0023006	2.6981	0.0014983	555.3251953126188	83.552	1.4398	81.291	80.967	82.407	-2.261	0.10683	0.0018698	NaN	34.173	67	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	733690	+		59526	21866	49073	49119							0.0814811967343303
VFKFLQTK	8	Unmodified	_VFKFLQTK_					0	0	0		ENST00000518477.5_1_5:78317432-78365396:-|nuORF;nc|ENSG00000132837|Q9UI17-2|DMGDH;ENSG00000132837|ENST00000255189|DMGDH	ENST00000518477.5_1_5:78317432-78365396:-|nuORF	ENST00000518477.5_1_5:78317432-78365396:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.8257141113281	2	505.805303	1009.59605	0.5368	0.00027151	-4.0942	-0.0020709	-3.5574	-0.0017993	505.80282669531454	35.697	0.69875	32.848	32.69	33.389	-2.849					18	13	2	0	0	0	0.028476	1	1216	1216		18.324	0	1	51106			59527	13071	49074	49120	65325	65325					0.0916382520794059
VFKGRAQNY	9	Unmodified	_VFKGRAQNY_					0	0	0			REV__ENSG00000237988|ENST00000641137|OR2I1P	REV__ENSG00000237988|ENST00000641137|OR2I1P	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.7557373046875	2	541.790715	1081.56688	0.048987	2.654E-05	3.3823	0.0018325	3.4313	0.0018591	541.792233269154	31.278	2.2075	31.278	30.831	33.039	0					91	44	4	0	0	0	0.027456	1	1409	1409		30.504	0	1	435290	+		59528	23425	49075	49121	65326	65326					0.029356809116507065
VFKISPAAVGT	11	Unmodified	_VFKISPAAVGT_					0	0	0		tr|A0A553SSW9|A0A553SSW9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_03895PE=3SV=1	tr|A0A553SSW9|A0A553SSW9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_03895PE=3SV=1	tr|A0A553SSW9|A0A553SSW9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_03895PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	545.31640625	2	545.318774	1088.623	-2.8527	-0.0015556	-0.96726	-0.00052747	-3.8199	-0.0020831	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.71498	1	11790	11790		24.519	0	1	337600			59529	34428	49076	49122	65327	65327					0.08222889028479585
VFKKGKIVN	9	Unmodified	_VFKKGKIVN_					0	0	0		ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.2923583984375	2	516.831852	1031.64915	-1.1338	-0.00058598	1.0422	0.00053865	-0.09158	-4.7331E-05	516.832192115591	92.666	1.151	90.158	89.908	91.059	-2.5072					50	22	3	0	0	0	0.027462	1	8151	8151		45.952	20.502	1	127230			59530	7002	49077	49123	65328	65328					0.1345920299061163
VFKKGKIVN	9	Unmodified	_VFKKGKIVN_					0	0	0		ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	MULTI-MATCH	OvCa9_classI_Rep2	2		2	516.831852	1031.64915	1.5178	0.00078446	-1.7982	-0.00092937	-0.28039	-0.00014491	516.8308720433375	90.871	1.7633	89.636	89.193	90.956	-1.2355	-0.3015	-0.0014293	NaN	45.952	63	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120700			59531	7002	49077	49123							0.1345920299061163
VFKKGKIVN	9	Unmodified	_VFKKGKIVN_					0	0	0		ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	ENSG00000169340|ENST00000302451|PDILT	MULTI-MATCH	OvCa9_classI_Rep3	3		2	516.831852	1031.64915	-0.5842	-0.00030193	-0.76687	-0.00039634	-1.3511	-0.00069827	516.8312893776425	92.041	1.4794	90.017	89.737	91.216	-2.0241	0.080091	-0.00036324	NaN	45.952	52	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	143800			59532	7002	49077	49123							0.1345920299061163
VFKKYWTRKVY	11	Unmodified	_VFKKYWTRKVY_					0	0	0			REV__ENSG00000154175|ENST00000471714|ABI3BP	REV__ENSG00000154175|ENST00000471714|ABI3BP	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.8260192871094	3	506.625761	1516.85546	-0.93801	-0.00047522	-2.0883	-0.001058	-3.0263	-0.0015332	506.9591011748687	76.594	0.99142	74.74	74.308	75.299	-1.854					41	18	3	0	0	0	0.026321	1	6400	6400		10.104	0.45776	1	63561	+		59533	20365	49078	49124	65329	65329					0.11770151099040049
VFKLFCLVV	9	Unmodified	_VFKLFCLVV_					0	0	0			REV__ENST00000243997.7_1_20:57601245-57601359:-|nuORF	REV__ENST00000243997.7_1_20:57601245-57601359:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.8131103515625	2	534.319731	1066.62491	0.60918	0.0003255	3.2569	0.0017402	3.8661	0.0020657	534.3213583150491	160.45	0.65208	160.45	160.11	160.76	0					29	12	3	0	0	0	0.027462	1	18793	18793		40.573	19.626	1	119970	+		59534	23827	49079	49125	65330	65330					0.09426226512709945
VFKLLAVA	8	Unmodified	_VFKLLAVA_					0	0	0			REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|338|2|anti-sense	REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|338|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	430.75946044921875	2	430.783839	859.553125	-0.16938	-7.2966E-05	-2.885	-0.0012428	-3.0544	-0.0013158	430.78233253746043	71.784	0.33595	68.328	68.124	68.46	-3.4563					8	6	2	0	0	0	0.028476	1	5469	5469		20.482	0	1	10279	+		59535	28501	49080	49126	65331	65331					0.11773055150513301
VFKMCYNY	8	Unmodified	_VFKMCYNY_					0	0	0		ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	ENSG00000117983|ENST00000529681|MUC5B	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.8748168945312	2	534.238081	1066.46161	2.0575	0.0010992	-3.3374	-0.001783	-1.2799	-0.00068379	534.2363131885834	117.86	0.60286	117.86	117.51	118.11	0					16	12	2	0	0	0	0.028476	1	13511	13511		25.45	2.8705	1	105590			59536	3283	49081	49127	65332	65332					-0.06896319600627976
VFKPLGSNPD	10	Unmodified	_VFKPLGSNPD_					0	0	0			REV__ENST00000458579.5_1_7:44091436-44097592:+|nuORF	REV__ENST00000458579.5_1_7:44091436-44097592:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.8065795898438	2	537.284931	1072.55531	-1.5447	-0.00082994	-4.2967	-0.0023085	-5.8414	-0.0031385	537.2835210894281	70.402	1.3102	66.921	66.539	67.849	-3.4812					62	26	4	0	0	0	0.026606	1	5402	5402		52.937	28.433	1	323790	+		59537	19375	49082	49128	65333	65333					0.021934390976639406
VFKPLGSNPD	10	Unmodified	_VFKPLGSNPD_					0	0	0			REV__ENST00000458579.5_1_7:44091436-44097592:+|nuORF	REV__ENST00000458579.5_1_7:44091436-44097592:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	537.284931	1072.55531	0.83194	0.00044699	-3.5619	-0.0019138	-2.73	-0.0014668	537.2828801172589	67.035	0.51421	67.035	66.857	67.371	0	0.071263	0.00030439	NaN	52.937	30	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1687600	+		59538	19375	49082	49128							0.021934390976639406
VFKRRTPH	8	Unmodified	_VFKRRTPH_					0	0	0		ENSG00000137642|ENST00000260197|SORL1;ENST00000532451.1_1_11:121323091-121416136:+|nuORF	ENSG00000137642|ENST00000260197|SORL1	ENSG00000137642|ENST00000260197|SORL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.7761840820312	2	520.809242	1039.60393	-1.0456	-0.00054457	3.0561	0.0015916	2.0104	0.0010471	520.8106599888662	59.859	0.30968	59.859	59.647	59.957	0					17	7	3	0	0	0	0.028476	1	5155	5155		35.201	0	1	387450			59539	4603	49083	49129	65334	65334					0.08571397248078938
VFKTPVVKAS	10	Unmodified	_VFKTPVVKAS_					0	0	0			REV__ENST00000513016.5_1_5:82832752-82876250:+|nuORF	REV__ENST00000513016.5_1_5:82832752-82876250:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	538.3271484375	2	538.329142	1074.64373	-5.6218	-0.0030264	1.9414	0.0010451	-3.6804	-0.0019813	538.3300395836094	158.87	1.4268	157.61	157.3	158.73	-1.267					79	27	5	0	0	0	0.6349	1	13714	13714		37.812	0.65241	1	528870	+		59540	16619	49084	49130	65335	65335					0.10939479408125408
VFKVVPMLNPD	11	Unmodified	_VFKVVPMLNPD_					0	0	0		nc|ENSG00000146856|Q8NEM8-2|AGBL3;ENSG00000146856|ENST00000436302|AGBL3;nc|ENSG00000146856|Q8NEM8|AGBL3	nc|ENSG00000146856|Q8NEM8-2|AGBL3	nc|ENSG00000146856|Q8NEM8-2|AGBL3	MULTI-MSMS	OvCa9_classI_Rep2	2	629.8478393554688	2	629.846842	1257.67913	0.41848	0.00026358	3.115	0.001962	3.5335	0.0022256	629.8484322050896	91.238	2.6459	90.003	89.341	91.986	-1.2355					108	50	4	0	0	0	0.41331	1	8093	8093		51.193	5.2204	1	840130			59541	5311	49085	49131	65336	65336					0.06059773873630547
VFLADWATI	9	Unmodified	_VFLADWATI_					0	0	0			REV__tr|A0A553SQ14|A0A553SQ14_NIACIQuinoneoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_17080PE=4SV=1	REV__tr|A0A553SQ14|A0A553SQ14_NIACIQuinoneoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_17080PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	518.2785034179688	2	518.279118	1034.54368	0.30513	0.00015814	-1.1342	-0.00058784	-0.82909	-0.0004297	518.2776323156559	105.62	0.96203	105.62	105.22	106.18	0					40	21	3	0	0	0	0.36502	1	11860	11860		55.504	2.5675	1	2576400	+		59542	30596	49086	49132	65337	65337					0.027792420743253388
VFLANFALVL	10	Unmodified	_VFLANFALVL_					0	0	0		ENST00000582590.1_1_17:26731487-26733159:-|nuORF;nc|ENSG00000076351|Q96NT5-2|SLC46A1;ENSG00000076351|ENST00000612814|SLC46A1	ENST00000582590.1_1_17:26731487-26733159:-|nuORF	ENST00000582590.1_1_17:26731487-26733159:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8299560546875	2	553.83406	1105.65357	-3.0788	-0.0017052	-4.2569	-0.0023576	-7.3358	-0.0040628	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.75594	1	11813	11813		24.203	0	1	308210			59543	1555	49087	49133	65338	65338					0.10496667413508476
VFLDKFILK	9	Unmodified	_VFLDKFILK_					0	0	0		DSEL|p.A1119Sfs*13|1|0.11|ENSG00000171451|chr18:67511285-67511286|-/A|frameshift_variant;ENSG00000171451|ENST00000310045|DSEL	DSEL|p.A1119Sfs*13|1|0.11|ENSG00000171451|chr18:67511285-67511286|-/A|frameshift_variant	DSEL|p.A1119Sfs*13|1|0.11|ENSG00000171451|chr18:67511285-67511286|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	561.8455810546875	2	561.84971	1121.68487	-3.2196	-0.001809	-4.0749	-0.0022895	-7.2945	-0.0040984	561.8472802195274	152.47	1.17	152.24	151.83	153	-0.22697					70	23	4	0	0	0	0.65476	1	15518	15518		25.45	3.4903	1	142980			59544	762	49088	49134	65339	65339					0.12889240447611883
VFLEDGVLY	9	Unmodified	_VFLEDGVLY_					0	0	0			REV__DLG1-PAK2|1|fusion	REV__DLG1-PAK2|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.943115234375	2	527.776408	1053.53826	1.3726	0.00072442	-4.1607	-0.0021959	-2.7882	-0.0014715	527.7742360071908	83.649	0.71573	83.649	83.335	84.051	0					25	16	2	0	0	0	0.027462	1	8729	8729		42.474	21.993	1	707160	+		59545	16302	49089	49135	65340	65340					0.013635184918712184
VFLEDGVLY	9	Unmodified	_VFLEDGVLY_					0	0	0			REV__DLG1-PAK2|1|fusion	REV__DLG1-PAK2|1|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	527.776408	1053.53826	-1.9053	-0.0010056	-8.7235	-0.004604	-10.629	-0.0056096	527.7713509249347	85.183	0.83982	83.654	83.516	84.355	-1.5294	0.00236	-0.0030607	NaN	42.474	21	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13597	+		59546	16302	49089	49135							0.013635184918712184
VFLFAMLPN	9	Unmodified	_VFLFAMLPN_					0	0	0			REV__nc|ENSG00000173611|Q8N9R8-2|SCAI	REV__nc|ENSG00000173611|Q8N9R8-2|SCAI	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.29833984375	2	526.285889	1050.55722	0.83101	0.00043735	1.4062	0.00074006	2.2372	0.0011774	526.2865952254014	112.77	1.4545	111.69	111.37	112.82	-1.0753					45	28	2	0	0	0	0.027462	1	8300	8300		31.955	17.818	1	167840	+		59547	29009	49090	49136	65341	65341					0.03396776581917038
VFLFGEATK	9	Unmodified	_VFLFGEATK_					0	0	0			REV__nc|ENSG00000029153|Q8WYA1-9|BMAL2	REV__nc|ENSG00000029153|Q8WYA1-9|BMAL2	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.2593078613281	2	506.279118	1010.54368	-0.4038	-0.00020443	-1.1935	-0.00060422	-1.5973	-0.00080866	506.27892464903346	80.132	0.6044	77.792	77.612	78.217	-2.3399					20	11	2	0	0	0	0.027295	1	4397	4397		64.207	0	1	20588	+		59548	16579	49091	49137	65342	65342					0.03883242074323334
VFLGRLFPV	9	Unmodified	_VFLGRLFPV_					0	0	0			REV__ENST00000356731.9_1_5:179050489-179050636:-|nuORF	REV__ENST00000356731.9_1_5:179050489-179050636:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.776611328125	2	524.32112	1046.62769	0.70581	0.00037007	-2.9321	-0.0015374	-2.2263	-0.0011673	524.3192580595553	74.628	0.62738	74.628	74.214	74.841	0					27	15	2	0	0	0	0.027462	1	7412	7412		33.516	12.569	1	400510	+		59549	24770	49092	49138	65343	65343					0.10623817961891291
VFLHFFIGDE	10	Unmodified	_VFLHFFIGDE_					0	0	0			REV__L1P3_dup682|chr3:196908842-196910335:+|1.1693758815815145|0.2885488685750818|2.02|428.0|62|2|anti-sense	REV__L1P3_dup682|chr3:196908842-196910335:+|1.1693758815815145|0.2885488685750818|2.02|428.0|62|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	611.3292846679688	2	612.308406	1222.60226	-0.82377	-0.0005044	0.77254	0.00047303	-0.051231	-3.1369E-05	612.8107200717454	69.8	0.29289	69.8	69.712	70.005	0					10	6	2	0	0	0	0.027147	1	6685	6685		29.15	13.508	1	118980	+		59550	28456	49093	49139	65344	65344					-0.00013701351167583198
VFLKAGASF	9	Unmodified	_VFLKAGASF_					0	0	0		ENST00000368875.6_2_1:151298654-151299818:-|nuORF	ENST00000368875.6_2_1:151298654-151299818:-|nuORF	ENST00000368875.6_2_1:151298654-151299818:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	470.2699890136719	2	470.268553	938.522553	2.9728	0.001398	-0.42091	-0.00019794	2.5519	0.0012001	470.26820425991565	89.5	1.9008	89.5	89.235	91.135	0					91	46	4	0	0	0	0.12515	2	9551	9551;9613		90.37	34.866	1	4873700			59551	10885	49094	49140	65345;65346	65345					0.05083276765469691
VFLKQMILW	9	Unmodified	_VFLKQMILW_					0	0	0		ENST00000567229.5_1_15:66793594-66793627:-|nuORF	ENST00000567229.5_1_15:66793594-66793627:-|nuORF	ENST00000567229.5_1_15:66793594-66793627:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3421630859375	2	589.343738	1176.67292	-4.3129	-0.0025418	2.8541	0.001682	-1.4588	-0.00085974	589.3453728975387	144.79	3.9151	143.81	141.71	145.63	-0.97299					242	78	5	0	0	0	0.6959	1	12015	12015		19.36	1.0979	1	192050			59552	13857	49095	49141	65347	65347					0.09165300432778167
VFLLFVSHL	9	Unmodified	_VFLLFVSHL_					0	0	0		nc|nan|A1L170-2|C1orf226	nc|nan|A1L170-2|C1orf226	nc|nan|A1L170-2|C1orf226	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.2781372070312	2	537.820953	1073.62735	-0.62183	-0.00033443	-2.2454	-0.0012076	-2.8673	-0.0015421	537.8195189709445	35.173	0.28667	35.173	34.911	35.198	0					6	5	2	0	0	0	0.027462	1	1748	1748		18.324	0	1	11140			59553	15414	49096	49142	65348	65348					0.09348398242059375
VFLLPACLYPF	11	Unmodified	_VFLLPACLYPF_					0	0	0		PAQR6|p.T233*|1|0.09|ENSG00000160781|chr1:156244824-156244825|-/CA|frameshift_variant;nc|ENSG00000160781|Q6TCH4-4|PAQR6;nc|ENSG00000160781|Q6TCH4-5|PAQR6;ENSG00000160781|ENST00000292291|PAQR6	PAQR6|p.T233*|1|0.09|ENSG00000160781|chr1:156244824-156244825|-/CA|frameshift_variant	PAQR6|p.T233*|1|0.09|ENSG00000160781|chr1:156244824-156244825|-/CA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	428.2197265625	3	428.234994	1281.68315	-0.23228	-9.9471E-05	0.60795	0.00026035	0.37567	0.00016088	428.23521028790844	38.859	0.53539	38.859	38.661	39.196	0					14	11	2	0	0	0	0.025594	1	2248	2248		33.922	0	1	56490			59554	6088	49097	49143	65349	65349					0.053578633673396325
VFLLPELQL	9	Unmodified	_VFLLPELQL_					0	0	0		ENST00000489408.1_1_3:32023272-32027845:+|nuORF	ENST00000489408.1_1_3:32023272-32027845:+|nuORF	ENST00000489408.1_1_3:32023272-32027845:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	536.327880859375	2	536.326068	1070.63758	2.4843	0.0013324	-0.14502	-7.7776E-05	2.3393	0.0012546	536.3259756048828	121.21	0.64684	121.21	120.87	121.52	0					32	14	3	0	0	0	0.27001	1	13937	13937		66.429	0	1	442560			59555	12677	49098	49144	65350	65350					0.10508961176606135
VFLLPELQL	9	Unmodified	_VFLLPELQL_					0	0	0		ENST00000489408.1_1_3:32023272-32027845:+|nuORF	ENST00000489408.1_1_3:32023272-32027845:+|nuORF	ENST00000489408.1_1_3:32023272-32027845:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	536.326068	1070.63758	2.411	0.0012931	7.2992	0.0039147	9.7102	0.0052078	536.3302770253397	122.35	0.62958	121.32	121.06	121.69	-1.0286	0.054	0.0072638	NaN	66.429	20	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19035			59556	12677	49098	49144							0.10508961176606135
VFLLTRCL	8	Carbamidomethyl (C)	_VFLLTRC(Carbamidomethyl (C))L_	VFLLTRC(1)L		VFLLTRC(63)L		0	1	0		nc|ENSG00000164828|O94901-6|SUN1;nc|ENSG00000164828|O94901-5|SUN1;ENSG00000164828|ENST00000401592|SUN1;nc|ENSG00000164828|O94901-9|SUN1;ENST00000413171.6_1_7:872152-892516:+|nuORF	nc|ENSG00000164828|O94901-6|SUN1	nc|ENSG00000164828|O94901-6|SUN1	MSMS	OvCa99_classI_Rep5	1	511.2955322265625	2	511.296788	1020.57902	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.94	1	112.94	112.44	113.44	0								0	0	0	0.30129	1	12866	12866		63.306	13.865	1				59557	6490	49099	49145	65351	65351	63				0.06955581330487348
VFLLTVWPLF	10	Unmodified	_VFLLTVWPLF_					0	0	0		L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|445|3|anti-sense	L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|445|3|anti-sense	L1PA3_dup2320|chr3:189017230-189025537:-|1.0543404175743978|0.1456232774921604|2.86|424.0|445|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	412.5701599121094	3	412.245999	1233.71617	0.35283	0.00014545	3.1925	0.0013161	3.5453	0.0014615	412.247112521867	20.369	0.6091	19.03	18.803	19.412	-1.3386					16	11	2	0	0	0	0.762	1	34	34		23.523	0.96111	1	16437			59558	14681	49100	49146	65352	65352					0.10865813481677833
VFLLVVSYWL	10	Unmodified	_VFLLVVSYWL_					0	0	0		ENSG00000162738|ENST00000368061|VANGL2	ENSG00000162738|ENST00000368061|VANGL2	ENSG00000162738|ENST00000368061|VANGL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.2140808105469	3	413.577637	1237.71108	0.39715	0.00016425	2.4483	0.0010126	2.8455	0.0011768	413.57829051152237	39.181	0.59606	36.255	35.799	36.395	-2.9264					16	11	2	0	0	0	0.026968	1	1567	1567		36.447	0	1	12205			59559	6225	49101	49147	65353	65353					0.10173509619085053
VFLMLYLITL	10	Unmodified	_VFLMLYLITL_					0	0	0		ENSG00000172457|ENST00000641668|OR9G4;nc|ENSG00000172457|Q8NGQ1|OR9G4	ENSG00000172457|ENST00000641668|OR9G4	ENSG00000172457|ENST00000641668|OR9G4	MULTI-MSMS	OvCa9_classI_Rep2	2	409.24566650390625	3	409.247011	1224.7192	0.47988	0.00019639	-0.62403	-0.00025538	-0.14415	-5.8995E-05	409.2467621212051	60.008	1.3036	57.237	56.672	57.976	-2.7702					78	24	4	0	0	0	0.49558	1	4409	4409		54.776	1.6874	1	597550			59560	7298	49102	49148	65354	65354					0.11583320544195885
VFLMLYLITL	10	Unmodified	_VFLMLYLITL_					0	0	0		ENSG00000172457|ENST00000641668|OR9G4;nc|ENSG00000172457|Q8NGQ1|OR9G4	ENSG00000172457|ENST00000641668|OR9G4	ENSG00000172457|ENST00000641668|OR9G4	MULTI-MSMS	OvCa9_classI_Rep4_	4	409.24713134765625	3	409.247011	1224.7192	1.239	0.00050705	-1.628	-0.00066627	-0.38905	-0.00015922	409.24634722106185	60.775	1.4236	57.345	56.848	58.272	-3.43					97	28	5	0	0	0	0.50999	1	4161	4161		52.937	2.1455	1	1129100			59561	7298	49102	49148	65355	65355					0.11583320544195885
VFLNFMAVQD	10	Unmodified	_VFLNFMAVQD_					0	0	0		nc|ENSG00000149782|Q01970-2|PLCB3;ENSG00000149782|ENST00000279230|PLCB3	nc|ENSG00000149782|Q01970-2|PLCB3	nc|ENSG00000149782|Q01970-2|PLCB3	MULTI-SECPEP	OvCa99_classI_Rep5	1	591.3599243164062	2	592.294442	1182.57433	1.5195	0.00090001	2.4156	0.0014307	3.9351	0.0023307	592.296144780612	130.7	0.47968	130.7	130.34	130.82	0					13	9	2	0	0	0	0.026931	1	15130	15130		30.318	4.7437	1	37872			59562	5488	49103	49149	65356	65356					-0.009653476029598096
VFLNIRSLG	9	Unmodified	_VFLNIRSLG_					0	0	0			REV__ENSG00000157445|ENST00000474759|CACNA2D3	REV__ENSG00000157445|ENST00000474759|CACNA2D3	MULTI-MSMS	OvCa9_classI_Rep2	2	509.80377197265625	2	509.805834	1017.59712	-0.41042	-0.00020923	-3.6368	-0.0018541	-4.0473	-0.0020633	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.6959	1	13499	13499		19.36	1.995	1	150140	+		59563	20521	49104	49150	65357	65357					0.08902039576855714
VFLNVIPQP	9	Unmodified	_VFLNVIPQP_					0	0	0		ENST00000318493.10_1_7:116397827-116398583:+|nuORF	ENST00000318493.10_1_7:116397827-116398583:+|nuORF	ENST00000318493.10_1_7:116397827-116398583:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	512.8141479492188	2	513.80276	1025.59097	-0.64593	-0.00033188	-4.0141	-0.0020625	-4.66	-0.0023943	513.8003653291865	82.672	1.2442	80.375	79.836	81.081	-2.2963					33	24	2	0	0	0	0.027462	1	4682	4682		12.207	0	1	26164			59564	10362	49105	49151	65358	65358					0.0791952134532039
VFLPCPIIF	9	Unmodified	_VFLPCPIIF_					0	0	0		ENST00000521913.6_3_8:26514019-26514187:+|nuORF	ENST00000521913.6_3_8:26514019-26514187:+|nuORF	ENST00000521913.6_3_8:26514019-26514187:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	524.7999267578125	2	524.798632	1047.58271	-0.044328	-2.3263E-05	3.0388	0.0015948	2.9945	0.0015715	524.8003676874375	130.37	0.98898	129.26	129.03	130.02	-1.1121					41	19	3	0	0	0	0.42921	2	10350	10350;10362		49.211	5.5847	1	97930			59565	13132	49106	49152	65359;65360	65359					0.06082251104339775
VFLPCPIIF	9	Unmodified	_VFLPCPIIF_					0	0	0		ENST00000521913.6_3_8:26514019-26514187:+|nuORF	ENST00000521913.6_3_8:26514019-26514187:+|nuORF	ENST00000521913.6_3_8:26514019-26514187:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.8009643554688	2	524.798632	1047.58271	2.5467	0.0013365	0.3369	0.00017681	2.8836	0.0015133	524.7989032554841	130.75	1.3336	129.27	128.91	130.24	-1.4779					53	27	3	0	0	0	0.32242	1	12581	12581		60.404	12.488	1	116520			59566	13132	49106	49152	65361	65361					0.06082251104339775
VFLPDNGAFF	10	Unmodified	_VFLPDNGAFF_					0	0	0		nc|ENSG00000137216|Q5T3F8-3|TMEM63B;ENSG00000137216|ENST00000323267|TMEM63B;TMEM63C|p.K647Hfs*4|1|0.07|ENSG00000165548|chr14:77249358-77249359|-/CACAG|frameshift_variant;TMEM63C|p.L648Cfs*87|1|0.06|ENSG00000165548|chr14:77249360-77249361|-/GTGTAGACAAATGCTTGTGAAC|frameshift_variant;TMEM63C|p.E778Gfs*4|1|0.05|ENSG00000165548|chr14:77256638-77256638|A/-|frameshift_variant;ENSG00000165548|ENST00000298351|TMEM63C	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	nc|ENSG00000137216|Q5T3F8-3|TMEM63B	MULTI-MSMS	OvCa99_classI_Rep5	1	563.7828369140625	2	563.782025	1125.5495	1.2206	0.00068813	0.69043	0.00038925	1.911	0.0010774	563.7822176256036	151.58	0.728	151.58	151.25	151.97	0					29	14	3	0	0	0	0.62299	1	17738	17738		39.253	1.4413	1	205300			59567	4569	49107	49153	65362	65362					-0.008256594139993467
VFLPLGPI	8	Unmodified	_VFLPLGPI_					0	0	0			REV__HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|135|1|anti-sense	REV__HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|135|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	427.7593994140625	2	428.270564	854.526576	-0.17794	-7.6208E-05	-4.0422	-0.0017311	-4.2201	-0.0018073	428.2688129409501	66.354	0.97804	62.864	62.612	63.59	-3.4902					35	19	2	0	0	0	0.028476	1	4904	4904		24.504	0	1	252600	+		59568	28278	49108	49154	65363	65363					0.0934936625917544
VFLQQMQNP	9	Unmodified	_VFLQQMQNP_					0	0	0		ENSG00000160803|ENST00000368309|UBQLN4	ENSG00000160803|ENST00000368309|UBQLN4	ENSG00000160803|ENST00000368309|UBQLN4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.762451171875	2	552.778959	1103.54336	-0.71861	-0.00039723	2.0889	0.0011547	1.3703	0.00075746	552.779254864681	81.085	0.8349	78.375	78.052	78.887	-2.7106					19	16	2	0	0	0	0.02741	1	6628	6628		60.972	0	1	32801			59569	6095	49109	49155	65364	65364					-0.00426500917183148
VFLRAINKF	9	Unmodified	_VFLRAINKF_					0	0	0		ENSG00000134516|ENST00000520908|DOCK2;ENST00000523351.5_1_5:169188379-169509859:+|nuORF;ENST00000522994.1_1_5:169412837-169427133:+|nuORF	ENSG00000134516|ENST00000520908|DOCK2	ENSG00000134516|ENST00000520908|DOCK2	MULTI-MSMS	OvCa99_classI_Rep5	1	554.3391723632812	2	554.337301	1106.66005	2.4095	0.0013356	-0.65609	-0.0003637	1.7534	0.00097195	554.3366320178965	84.734	0.78	84.734	84.512	85.292	0					46	18	4	0	0	0	0.22961	1	8858	8858		71.296	21.271	1	2263200			59570	4305	49110	49156	65365	65365					0.11098605364873038
VFLRSRNKGT	10	Unmodified	_VFLRSRNKGT_					0	0	0		tr|A0A553SSQ2|A0A553SSQ2_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_03500PE=4SV=1	tr|A0A553SSQ2|A0A553SSQ2_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_03500PE=4SV=1	tr|A0A553SSQ2|A0A553SSQ2_NIACIPTSbeta-glucosidetransportersubunitEIIBCAOS=NialliacirculansOX=1397GN=CEQ21_03500PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3428955078125	2	589.343646	1176.67274	-5.1334	-0.0030254	3.8974	0.0022969	-1.236	-0.00072842	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.74374	1	12611	12611		25.574	1.0549	1	589610			59571	34401	49111	49157	65366	65366					0.09147016757128767
VFLSGSRVW	9	Unmodified	_VFLSGSRVW_					0	0	0			REV__tr|A0A553SUE1|A0A553SUE1_NIACILassopeptidebiosynthesisB2proteinOS=NialliacirculansOX=1397GN=CEQ21_06815PE=4SV=1	REV__tr|A0A553SUE1|A0A553SUE1_NIACILassopeptidebiosynthesisB2proteinOS=NialliacirculansOX=1397GN=CEQ21_06815PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.767822265625	2	525.790184	1049.56581	2.0526	0.0010793	-4.4488	-0.0023391	-2.3962	-0.0012599	525.7876675090548	84.257	0.91827	84.257	83.671	84.589	0					47	21	3	0	0	0	0.027462	1	8756	8756		38.806	21.441	1	1369600	+		59572	31069	49112	49158	65367	65367					0.04301466542779053
VFLSNLLKQSI	11	Unmodified	_VFLSNLLKQSI_					0	0	0			REV__ENST00000575285.1_1_16:3273894-3274698:-|nuORF	REV__ENST00000575285.1_1_16:3273894-3274698:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	421.71307373046875	3	421.255334	1260.74417	0.010729	4.5195E-06	0.90538	0.00038139	0.9161	0.00038591	421.25558253701183	58.789	0.90562	58.789	58.322	59.228	0					42	22	3	0	0	0	0.02595	1	4952	4952		33.039	5.3955	1	2235100	+		59573	27774	49113	49159	65368	65368					0.12423091671121256
VFLSVFAVVTI	11	Unmodified	_VFLSVFAVVTI_					0	0	0		ENSG00000165029|ENST00000374736|ABCA1;ENST00000494467.1_1_9:107587931-107593243:-|nuORF	ENSG00000165029|ENST00000374736|ABCA1	ENSG00000165029|ENST00000374736|ABCA1	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8565063476562	2	597.860275	1193.706	-2.7036	-0.0016164	-3.9017	-0.0023327	-6.6053	-0.0039491	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.64273	1	12533	12533		40.778	1.5253	1	591030			59574	6511	49114	49160	65369	65369					0.11689205756488263
VFLTVLLLH	9	Unmodified	_VFLTVLLLH_					0	0	0		ENST00000571572.2_1_17:6353382-6353613:+|nuORF	ENST00000571572.2_1_17:6353382-6353613:+|nuORF	ENST00000571572.2_1_17:6353382-6353613:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.3056640625	2	527.836603	1053.65865	-1.7049	-0.00089989	-2.5902	-0.0013672	-4.2951	-0.0022671	527.8351268506144	50.82	1.3158	47.647	47.36	48.676	-3.1734					63	25	4	0	0	0	0.027462	1	2930	2930		26.796	0	1	394940			59575	13900	49115	49161	65370	65370					0.13396971276142722
VFLTVSYIN	9	Unmodified	_VFLTVSYIN_					0	0	0		ENST00000479838.2_1_7:104742652-104742796:+|nuORF	ENST00000479838.2_1_7:104742652-104742796:+|nuORF	ENST00000479838.2_1_7:104742652-104742796:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.3056640625	2	528.292225	1054.5699	-1.9237	-0.0010163	-1.6559	-0.0008748	-3.5796	-0.0018911	528.2909986759645	50.611	1.2189	47.438	47.153	48.372	-3.1734					36	23	2	0	0	0	0.027448	1	2930	2930		35.618	12.576	1	140170			59576	12511	49116	49162	65371	65371					0.04479511245813228
VFLVARNMAI	10	Unmodified	_VFLVARNMAI_					0	0	0		tr|A0A553SH24|A0A553SH24_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_12030PE=4SV=1	tr|A0A553SH24|A0A553SH24_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_12030PE=4SV=1	tr|A0A553SH24|A0A553SH24_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_12030PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.329345703125	2	567.328619	1132.64269	-0.48412	-0.00027465	2.6482	0.0015024	2.1641	0.0012278	567.3299446868054	145.54	4.8872	144.11	142.68	147.57	-1.4357					247	95	4	0	0	0	0.69986	1	14321	14321		30.504	0.18592	1	208760			59577	33226	49117	49163	65372	65372					0.08166941767581193
VFLVFSMK	8	Unmodified	_VFLVFSMK_					0	0	0			REV__ENST00000503602.6_1_12:1085932-1086073:-|nuORF	REV__ENST00000503602.6_1_12:1085932-1086073:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.7740783691406	2	485.775157	969.53576	-1.0285	-0.00049961	0.1098	5.334E-05	-0.91867	-0.00044627	485.7752351689222	43.149	1.3869	40.142	39.801	41.188	-3.0074					74	26	5	0	0	0	0.7224	1	2045	2045		38.806	8.3025	1	1096600	+		59578	26846	49118	49164	65373	65373					0.04977391553211419
VFLVKQGEP	9	Unmodified	_VFLVKQGEP_					0	0	0			REV__ENSG00000181958|ENST00000641526|OR4A15	REV__ENSG00000181958|ENST00000641526|OR4A15	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.8124694824219	2	508.792392	1015.57023	-0.056859	-2.893E-05	-2.1742	-0.0011062	-2.231	-0.0011351	508.7924475861172	108.53	0.69228	108.31	108.03	108.72	-0.22498					23	13	3	0	0	0	0.027447	1	10140	10140		66.429	3.123	1	22775	+		59579	22254	49119	49165	65374	65374					0.06306930965661195
VFLVNVLIV	9	Unmodified	_VFLVNVLIV_					0	0	0		sp|P09717|US16_HCMVAUncharacterizedproteinHVLF2OS=Humancytomegalovirus(strainAD169)OX=10360GN=US16PE=3SV=2	sp|P09717|US16_HCMVAUncharacterizedproteinHVLF2OS=Humancytomegalovirus(strainAD169)OX=10360GN=US16PE=3SV=2	sp|P09717|US16_HCMVAUncharacterizedproteinHVLF2OS=Humancytomegalovirus(strainAD169)OX=10360GN=US16PE=3SV=2	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.296630859375	2	508.331153	1014.64775	0.57252	0.00029103	-1.8917	-0.0009616	-1.3192	-0.00067057	508.32997646929283	45.632	0.21383	45.632	45.54	45.754	0					7	4	2	0	0	0	0.027408	1	3172	3172		79.939	0	1	65504			59580	32886	49120	49166	65375	65375					0.1410156890184453
VFLVVLLVC	9	Unmodified	_VFLVVLLVC_					0	0	0			REV__nc|ENSG00000140538|Q16288-2|NTRK3	REV__nc|ENSG00000140538|Q16288-2|NTRK3	MULTI-MSMS	OvCa9_classI_Rep2	2	502.81463623046875	2	502.814282	1003.61401	-4.4511	-0.0022381	4.0456	0.0020342	-0.40549	-0.00020389	502.8162192928447	153.83	1.4178	153.6	153.28	154.7	-0.22696					88	30	4	0	0	0	0.68641	1	15712	15712		21.702	7.0382	1	684970	+		59581	19684	49121	49167	65376	65376					0.11234824138443855
VFLVWELI	8	Unmodified	_VFLVWELI_					0	0	0		tr|A0A7D6VRX1|A0A7D6VRX1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13735PE=3SV=1	tr|A0A7D6VRX1|A0A7D6VRX1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13735PE=3SV=1	tr|A0A7D6VRX1|A0A7D6VRX1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13735PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.802734375	2	509.802229	1017.5899	2.0238	0.0010317	0.96983	0.00049442	2.9936	0.0015261	509.80258654056354	136.53	4.9049	134.99	133.61	138.51	-1.5437					290	101	5	0	0	0	0.72922	1	13148	13148		37.028	6.5248	1	173450			59582	34961	49122	49168	65377	65377					0.08181306976428004
VFMHAMALL	9	Unmodified	_VFMHAMALL_					0	0	0			REV__DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	REV__DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.801025390625	2	516.772091	1031.52963	-0.41517	-0.00021455	2.5141	0.0012992	2.099	0.0010847	517.2746439734227	65.172	0.96741	61.686	61.358	62.325	-3.4854					41	19	3	0	0	0	0.027462	1	4660	4660		29.842	3.0454	1	153880	+		59583	16340	49123	49169	65378	65378					0.01512550050028949
VFMLVMFLI	9	Unmodified	_VFMLVMFLI_					0	0	0			REV__tr|A0A7D6VN41|A0A7D6VN41_9CLOTDUF58domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17355PE=4SV=1	REV__tr|A0A7D6VN41|A0A7D6VN41_9CLOTDUF58domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17355PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.2872924804688	2	556.815967	1111.61738	0.49774	0.00027715	0.35346	0.00019681	0.8512	0.00047396	557.3165037024481	73.752	0.34735	73.752	73.56	73.907	0					24	8	4	0	0	0	0.027462	1	7247	7247		39.021	12.225	1	841500	+		59584	31159	49124	49170	65379	65379					0.0660375092081722
VFMLVMFLI	9	Unmodified	_VFMLVMFLI_					0	0	0			REV__tr|A0A7D6VN41|A0A7D6VN41_9CLOTDUF58domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17355PE=4SV=1	REV__tr|A0A7D6VN41|A0A7D6VN41_9CLOTDUF58domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17355PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	556.815967	1111.61738	0.006061	3.3749E-06	-3.7643	-0.002096	-3.7582	-0.0020926	557.31575731766	75.736	0.77393	73.882	73.534	74.308	-1.854	0.096945	-0.0012885	NaN	29.842	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28745	+		59585	31159	49124	49170							0.0660375092081722
VFMLVMFLI	9	Unmodified	_VFMLVMFLI_					0	0	0			REV__tr|A0A7D6VN41|A0A7D6VN41_9CLOTDUF58domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17355PE=4SV=1	REV__tr|A0A7D6VN41|A0A7D6VN41_9CLOTDUF58domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17355PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	556.815967	1111.61738	-1.0945	-0.00060941	-2.5938	-0.0014443	-3.6883	-0.0020537	556.8142256337202	75.973	0.97392	73.602	73.164	74.138	-2.3715	-0.18339	1.4934E-05	NaN	29.842	32	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29293	+		59586	31159	49124	49170							0.0660375092081722
VFMLVMFLI	9	Unmodified	_VFMLVMFLI_					0	0	0			REV__tr|A0A7D6VN41|A0A7D6VN41_9CLOTDUF58domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17355PE=4SV=1	REV__tr|A0A7D6VN41|A0A7D6VN41_9CLOTDUF58domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17355PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	556.815967	1111.61738	0.18835	0.00010487	-3.2106	-0.0017877	-3.0222	-0.0016828	556.8138226621334	76.843	0.71977	73.904	73.598	74.317	-2.9389	0.11925	-0.00067193	NaN	29.842	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31290	+		59587	31159	49124	49170							0.0660375092081722
VFMPILSIF	9	Unmodified	_VFMPILSIF_					0	0	0			REV__tr|A0A7D7AB20|A0A7D7AB20_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13600PE=4SV=1	REV__tr|A0A7D7AB20|A0A7D7AB20_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13600PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.2722778320312	2	533.803914	1065.59328	2.0693	0.0011046	3.3023	0.0017628	5.3716	0.0028674	533.8054560940293	87.137	0.45403	87.137	86.844	87.298	0					29	10	4	0	0	0	0.027441	1	9200	9200		42.474	5.446	1	1640000	+		59588	32674	49125	49171	65380	65380					0.06310233758790673
VFMRWKEQF	9	Unmodified	_VFMRWKEQF_					0	0	0		ENSG00000141034|ENST00000268719|GID4	ENSG00000141034|ENST00000268719|GID4	ENSG00000141034|ENST00000268719|GID4	MULTI-MSMS	OvCa99_classI_Rep5	1	635.8256225585938	2	635.823701	1269.63285	3.7513	0.0023852	-1.1849	-0.00075337	2.5664	0.0016318	635.8228585147383	88.497	0.6312	88.497	88.212	88.843	0					28	14	3	0	0	0	0.049969	1	9415	9415		118.74	44.768	1	1136800			59589	4892	49126	49172	65381	65381					0.008817537621780502
VFMVLQKGQ	9	Unmodified	_VFMVLQKGQ_					0	0	0		nc|ENSG00000187288|Q96AQ7-2|CIDEC;ENSG00000187288|ENST00000336832|CIDEC;nc|ENSG00000187288|Q96AQ7-4|CIDEC	nc|ENSG00000187288|Q96AQ7-2|CIDEC	nc|ENSG00000187288|Q96AQ7-2|CIDEC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.7716064453125	2	525.294245	1048.57394	-1.5516	-0.00081503	0.22598	0.0001187	-1.3256	-0.00069633	525.2944501501727	100.84	0.56532	98.576	98.135	98.7	-2.2665					16	10	2	0	0	0	0.027462	1	9032	9032		31.955	11.008	1	33040			59590	8396	49127	49173	65382	65382					0.05159277467873835
VFNDLRLH	8	Unmodified	_VFNDLRLH_					0	0	0			REV__ENSG00000147155|ENST00000495186|EBP	REV__ENSG00000147155|ENST00000495186|EBP	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.6769104003906	2	507.279983	1012.54541	-0.19274	-9.7774E-05	3.5951	0.0018237	3.4024	0.001726	507.78237715099783	52.476	0.26317	52.476	52.259	52.522	0					8	5	2	0	0	0	0.028476	1	4102	4102		38.806	3.6054	1	169490	+		59591	20048	49128	49174	65383	65383					0.03964295882940405
VFNDVRLLL	9	Unmodified	_VFNDVRLLL_					0	0	0		ENSG00000116489|ENST00000263168|CAPZA1;ENST00000485542.5_1_1:113162466-113192092:+|nuORF;ENST00000476936.5_1_1:113162466-113209756:+|nuORF;ENST00000464669.1_1_7:116502674-116546397:+|nuORF;nc|ENSG00000198898|P47755-2|CAPZA2;CAPZA2-C7orf33|1|fusion;ENSG00000198898|ENST00000361183|CAPZA2	ENSG00000116489|ENST00000263168|CAPZA1;ENSG00000198898|ENST00000361183|CAPZA2	ENSG00000198898|ENST00000361183|CAPZA2	MULTI-MSMS	OvCa99_classI_Rep5	1	544.8281860351562	2	544.826766	1087.63898	1.6234	0.00088447	0.43284	0.00023582	2.0562	0.0011203	544.8268416229996	126.72	1.0838	126.72	126.28	127.36	0					67	23	4	0	0	0	0.021573	2	14664	14642;14664		145.16	40.929	1	1358200			59592	3181;8903	49129	49175	65384;65385	65385					0.09866595265384603
VFNGGTIL	8	Unmodified	_VFNGGTIL_					0	0	0		ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	ENSG00000008018|ENST00000262193|PSMB1	MULTI-MSMS	OvCa99_classI_Rep5	1	410.73480224609375	2	410.731803	819.449054	1.3973	0.00057392	2.8013	0.0011506	4.1986	0.0017245	410.73283021043034	71.935	0.50023	71.935	71.707	72.208	0					18	11	2	0	0	0	0.56195	1	6984	6984		71.296	2.5089	1	1019800			59593	910	49130	49176	65386	65386					0.0321072832301752
VFNHCAVA	8	Unmodified	_VFNHCAVA_					0	0	0			REV__ENSG00000165669|ENST00000369183|FAM204A	REV__ENSG00000165669|ENST00000369183|FAM204A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	430.75946044921875	2	430.707805	859.401058	-0.17203	-7.4095E-05	-1.3847	-0.00059639	-1.5567	-0.00067049	430.70680646608463	71.797	0.28632	68.34	68.174	68.46	-3.4563					7	5	2	0	0	0	0.028476	1	5469	5469		28.254	9.9922	1	9774.7	+		59594	21107	49131	49177	65387	65387					-0.03426668868701199
VFNKELTF	8	Unmodified	_VFNKELTF_					0	0	0			REV__nc|ENSG00000142173|P12110-3|COL6A2	REV__nc|ENSG00000142173|P12110-3|COL6A2	MULTI-MSMS	OvCa9_classI_Rep3	3	499.27166748046875	2	499.271293	996.528032	-0.72327	-0.00036111	0.40151	0.00020046	-0.32177	-0.00016065	499.271356214281	89.338	1.5163	87.207	86.846	88.362	-2.1309					90	29	4	0	0	0	0.47599	1	5503	5503		79.939	0	1	2067700	+		59595	19770	49132	49178	65388	65388					0.02962955557291025
VFNNKNTYTI	10	Unmodified	_VFNNKNTYTI_					0	0	0			REV__ENST00000319357.5_1_7:43664520-43664628:+|nuORF	REV__ENST00000319357.5_1_7:43664520-43664628:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	607.3147583007812	2	607.31422	1212.61389	-0.66897	-0.00040628	0.41703	0.00025327	-0.25194	-0.00015301	607.3143684506753	105.84	1.7433	105.4	104.95	106.69	-0.43642					110	34	4	0	0	0	0.47142	3	9852	9852;9870;9875		58.23	18.764	1	513880	+		59596	24435	49133	49179	65389;65390;65391	65389					0.016084956721442722
VFNNKNTYTI	10	Unmodified	_VFNNKNTYTI_					0	0	0			REV__ENST00000319357.5_1_7:43664520-43664628:+|nuORF	REV__ENST00000319357.5_1_7:43664520-43664628:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	607.3155517578125	2	607.31422	1212.61389	2.0773	0.0012616	-2.5709	-0.0015614	-0.49364	-0.00029979	607.3125547207642	106.87	1.4593	105.6	105.22	106.68	-1.267					86	28	4	0	0	0	0.12609	1	7559	7559		107.01	5.7549	1	1736200	+		59597	24435	49133	49179	65392	65392					0.016084956721442722
VFNNKNTYTI	10	Unmodified	_VFNNKNTYTI_					0	0	0			REV__ENST00000319357.5_1_7:43664520-43664628:+|nuORF	REV__ENST00000319357.5_1_7:43664520-43664628:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	607.31422	1212.61389	-1.2203	-0.00074109	0.97942	0.00059482	-0.24085	-0.00014627	607.314776519483	107.39	1.3422	105.51	105.17	106.51	-1.8785	0.0094873	0.0010841	NaN	107.01	88	26	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1457500	+		59598	24435	49133	49179							0.016084956721442722
VFNQASYLT	9	Unmodified	_VFNQASYLT_					0	0	0		ENSG00000167555|ENST00000360465|ZNF528;nc|ENSG00000167555|Q3MIS6-2|ZNF528;ENST00000598479.1_1_19:52918345-52919989:+|nuORF	ENSG00000167555|ENST00000360465|ZNF528	ENSG00000167555|ENST00000360465|ZNF528	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.7681884765625	2	521.763832	1041.51311	-0.56269	-0.00029359	0.92762	0.000484	0.36493	0.00019041	522.2654168677396	77.786	0.72687	74.969	74.536	75.263	-2.8165					28	14	3	0	0	0	0.027426	1	6236	6236		47.657	8.8512	1	60441			59599	6807	49134	49180	65393	65393					-0.00598536310712916
VFNSGRSIL	9	Unmodified	_VFNSGRSIL_					0	0	0			REV__tr|A0A7D6VND3|A0A7D6VND3_9CLOTPhageholinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14845PE=4SV=1	REV__tr|A0A7D6VND3|A0A7D6VND3_9CLOTPhageholinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14845PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.2979736328125	2	496.779816	991.545079	0.63969	0.00031778	-1.3818	-0.00068645	-0.74211	-0.00036866	496.77898234436253	68.249	1.421	64.759	64.381	65.802	-3.4902					56	28	3	0	0	0	0.027462	1	5105	5105		35.618	6.4687	1	311830	+		59600	31173	49135	49181	65394	65394					0.048968761631158486
VFNSGRSIL	9	Unmodified	_VFNSGRSIL_					0	0	0			REV__tr|A0A7D6VND3|A0A7D6VND3_9CLOTPhageholinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14845PE=4SV=1	REV__tr|A0A7D6VND3|A0A7D6VND3_9CLOTPhageholinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14845PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	496.779816	991.545079	-0.71059	-0.00035301	-0.11556	-5.741E-05	-0.82615	-0.00041042	496.77955393642196	67.498	1.1352	64.837	64.446	65.581	-2.661	0.039043	0.00081047	NaN	40.778	43	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71494	+		59601	31173	49135	49181							0.048968761631158486
VFNSIVSSLV	10	Unmodified	_VFNSIVSSLV_					0	0	0		tr|A0A7D6VQR5|A0A7D6VQR5_9CLOTAECfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23310PE=4SV=1	tr|A0A7D6VQR5|A0A7D6VQR5_9CLOTAECfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23310PE=4SV=1	tr|A0A7D6VQR5|A0A7D6VQR5_9CLOTAECfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23310PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.8240356445312	2	532.802957	1063.59136	1.8313	0.00097572	-0.77669	-0.00041382	1.0546	0.0005619	532.8026691056674	113.71	0.56202	113.71	113.5	114.06	0					17	12	2	0	0	0	0.026849	1	12994	12994		25.574	0	1	187790			59602	34866	49136	49182	65395	65395					0.062108962745242025
VFNTIDVIN	9	Unmodified	_VFNTIDVIN_					0	0	0			REV__tr|A0A7D6VMC5|A0A7D6VMC5_9CLOTPhenylalanine--tRNAligasebetasubunitOS=ClostridiumintestinaleOX=36845GN=pheTPE=3SV=1	REV__tr|A0A7D6VMC5|A0A7D6VMC5_9CLOTPhenylalanine--tRNAligasebetasubunitOS=ClostridiumintestinaleOX=36845GN=pheTPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.782470703125	2	517.779482	1033.54441	0.86489	0.00044782	1.6813	0.00087055	2.5462	0.0013184	518.281671868075	67.751	1.9638	64.261	63.888	65.852	-3.4902					131	39	4	0	0	0	0.1149	2	5063	5000;5063		93.143	21.266	1	4272300	+		59603	31130	49137	49183	65396;65397	65397					0.028980367233771176
VFPDKGYSF	9	Unmodified	_VFPDKGYSF_					0	0	0		nc|ENSG00000116001|P31483-2|TIA1;ENSG00000116001|ENST00000433529|TIA1;ENST00000477415.5_1_2:70443338-70451751:-|nuORF;ENST00000482876.5_1_2:70442329-70444102:-|nuORF;MAP4K5-TIA1|1|fusion	nc|ENSG00000116001|P31483-2|TIA1	nc|ENSG00000116001|P31483-2|TIA1	MULTI-MSMS	OvCa99_classI_Rep5	1	530.26220703125	2	530.260925	1058.5073	1.3843	0.00073402	0.85597	0.00045389	2.2402	0.0011879	530.2613416701934	90.796	2.9926	90.796	90.143	93.136	0					230	72	6	0	0	0	0.1243	4	9766	9736;9766;9796;9858		90.601	37.249	1	64525000			59604	3147	49138	49184	65398;65399;65400;65401	65399					-0.019616348223962632
VFPEKGYSF	9	Unmodified	_VFPEKGYSF_					0	0	0		ENST00000497671.5_1_10:121335179-121339984:-|nuORF;ENSG00000151923|ENST00000436547|TIAL1;nc|ENSG00000151923|Q01085-2|TIAL1;ENST00000489822.5_1_10:121336540-121356247:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	ENST00000497671.5_1_10:121335179-121339984:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	537.27001953125	2	537.26875	1072.52295	2.6082	0.0014013	-0.56337	-0.00030268	2.0449	0.0010986	537.2684896382216	88.872	4.5522	88.872	88.003	92.555	0					290	110	5	0	0	0	0.2784	2	9466	9436;9466		65.465	5.5634	1	72679000			59605	5595	49139	49185	65402;65403	65403					-0.010413483053298478
VFPFCFFC	8	Unmodified	_VFPFCFFC_					0	0	0			REV__chr17:38736170-38737338|228|24.64|0.81|4.94|-|1|TE_info:AluSz6,AluSz6_dup40748,Alu,SINE,donor,+,38737338,38737476|PCGF2,None|1	REV__chr17:38736170-38737338|228|24.64|0.81|4.94|-|1|TE_info:AluSz6,AluSz6_dup40748,Alu,SINE,donor,+,38737338,38737476|PCGF2,None|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.3269348144531	2	505.21916	1008.42377	-0.9333	-0.00047152	2.8625	0.0014462	1.9292	0.00097469	505.2205674002511	27.117	0.34933	27.117	26.942	27.291	0					10	6	2	0	0	0	0.028476	1	763	763		16.705	0	1	91575	+		59606	15943	49140	49186	65404	65404					-0.0801078579543173
VFPGPSFR	8	Unmodified	_VFPGPSFR_					0	0	0		nc|ENSG00000064607|Q8IX01-4|SUGP2;nc|ENSG00000064607|Q8IX01-3|SUGP2;ENSG00000064607|ENST00000452918|SUGP2;SUGP2|p.D303Vfs*22|1|0.07|ENSG00000064607|chr19:19025440-19025441|-/TCACAGATGCAATCATAGGTCA|frameshift_variant	nc|ENSG00000064607|Q8IX01-4|SUGP2	nc|ENSG00000064607|Q8IX01-4|SUGP2	MULTI-MSMS	OvCa99_classI_Rep5	1	453.7491455078125	2	453.745245	905.475937	1.9274	0.00087457	-0.14256	-6.4685E-05	1.7849	0.00080988	453.74507239472524	126.81	0.27258	126.81	126.69	126.96	0					9	5	2	0	0	0	0.72896	1	14678	14678		37.159	0	1	53935			59607	1301	49141	49187	65405	65405					0.019418369341906327
VFPGPSFR	8	Unmodified	_VFPGPSFR_					0	0	0		nc|ENSG00000064607|Q8IX01-4|SUGP2;nc|ENSG00000064607|Q8IX01-3|SUGP2;ENSG00000064607|ENST00000452918|SUGP2;SUGP2|p.D303Vfs*22|1|0.07|ENSG00000064607|chr19:19025440-19025441|-/TCACAGATGCAATCATAGGTCA|frameshift_variant	nc|ENSG00000064607|Q8IX01-4|SUGP2	nc|ENSG00000064607|Q8IX01-4|SUGP2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	453.745245	905.475937	2.5423	0.0011535	2.1538	0.00097726	4.696	0.0021308	453.7459846046254	126.85	0.64311	126.61	126.24	126.89	-0.2359	0.0032821	0.00094129	NaN	37.159	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13885			59608	1301	49141	49187							0.019418369341906327
VFPGPSFR	8	Unmodified	_VFPGPSFR_					0	0	0		nc|ENSG00000064607|Q8IX01-4|SUGP2;nc|ENSG00000064607|Q8IX01-3|SUGP2;ENSG00000064607|ENST00000452918|SUGP2;SUGP2|p.D303Vfs*22|1|0.07|ENSG00000064607|chr19:19025440-19025441|-/TCACAGATGCAATCATAGGTCA|frameshift_variant	nc|ENSG00000064607|Q8IX01-4|SUGP2	nc|ENSG00000064607|Q8IX01-4|SUGP2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	453.745245	905.475937	-0.11023	-5.0015E-05	2.7238	0.0012359	2.6136	0.0011859	453.74729054539984	127.84	1.7176	126.4	125.1	126.81	-1.4357	-0.20636	0.0014586	NaN	37.159	37	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25047			59609	1301	49141	49187							0.019418369341906327
VFPLDRKL	8	Unmodified	_VFPLDRKL_					0	0	0			REV__ENST00000538588.2_1_7:99821243-99844125:-|nuORF	REV__ENST00000538588.2_1_7:99821243-99844125:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.8154602050781	2	494.302927	986.591301	0.6075	0.00030029	-1.415	-0.00069942	-0.80747	-0.00039913	494.3022044543204	111.37	0.94799	109.86	109.63	110.58	-1.5111					33	17	3	0	0	0	0.028476	1	10251	10251		33.516	5.6333	1	39209	+		59610	27325	49142	49188	65406	65406					0.09746941065179726
VFPLRAEGLA	10	Unmodified	_VFPLRAEGLA_					0	0	0			REV__ENST00000557373.1_1_14:35343833-35343968:+|nuORF	REV__ENST00000557373.1_1_14:35343833-35343968:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.8330688476562	2	536.811116	1071.60768	-0.78345	-0.00042056	-1.6271	-0.00087342	-2.4105	-0.001294	536.8096026240305	93.37	0.45493	92.202	91.806	92.261	-1.168					13	8	2	0	0	0	0.026994	1	8329	8329		32.812	17.948	1	26484	+		59611	27573	49143	49189	65407	65407					0.07474022231281197
VFPLRLGSV	9	Unmodified	_VFPLRLGSV_					0	0	0			REV__ENST00000299320.9_1_16:4786559-4787880:+|nuORF	REV__ENST00000299320.9_1_16:4786559-4787880:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.305419921875	2	494.302927	986.591301	1.5318	0.00075718	1.1671	0.00057689	2.6989	0.0013341	494.3035297351817	108.92	0.52171	108.92	108.63	109.15	0					23	11	3	0	0	0	0.027462	1	12308	12308		33.516	0	1	331000	+		59612	24221	49144	49190	65408	65408					0.09746941065179726
VFPQMIVKV	9	Unmodified	_VFPQMIVKV_					0	0	0		nc|ENSG00000253771|Q5T6R2-2|TPTE2P1;nc|ENSG00000253771|Q5T6R2|TPTE2P1	nc|ENSG00000253771|Q5T6R2-2|TPTE2P1	nc|ENSG00000253771|Q5T6R2-2|TPTE2P1	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.2678833007812	2	530.814813	1059.61507	1.694	0.00089921	3.7912	0.0020124	5.4853	0.0029117	530.8167033652293	92.435	0.33323	92.435	92.301	92.635	0					13	7	2	0	0	0	0.027462	1	10015	10015		29.15	3.6994	1	686490			59613	15351	49145	49191	65409	65409					0.0876503850734025
VFPRLHNVLF	10	Unmodified	_VFPRLHNVLF_					0	0	0		ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	ENSG00000135763|ENST00000258243|URB2	MULTI-MSMS	OvCa99_classI_Rep5	1	621.3628540039062	2	621.361308	1240.70806	2.0456	0.0012711	0.050009	3.1073E-05	2.0956	0.0013021	621.3611905465596	106.25	1.4022	106.25	105.62	107.02	0					76	31	5	0	0	0	0.52321	1	11972	11972		51.335	12.083	1	2539900			59614	4412	49146	49192	65410	65410					0.09733679284931895
VFPSMPIKLQL	11	Unmodified	_VFPSMPIKLQL_					0	0	0		ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	ENSG00000128915|ENST00000261520|ICE2	MULTI-MSMS	OvCa99_classI_Rep5	1	636.8759155273438	2	636.872859	1271.73117	1.4047	0.00089461	1.1926	0.00075955	2.5973	0.0016542	636.8732542748858	139.08	0.82175	139.08	138.74	139.56	0					39	16	4	0	0	0	0.65063	1	16230	16230		40.058	0.80534	1	314290			59615	3912	49147	49193	65411	65411					0.106169372874092
VFPSSVLKM	9	Unmodified	_VFPSSVLKM_					0	0	0			REV__tr|A0A7D7A5N9|A0A7D7A5N9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06880PE=4SV=1	REV__tr|A0A7D7A5N9|A0A7D7A5N9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06880PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	504.28204345703125	2	504.283346	1006.55214	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.52	1	112.52	112.02	113.02	0								0	0	0	0.16648	1	12810	12810		60.972	2.19	1		+		59616	32640	49148	49194	65412	65412					0.04912472719320249
VFPTSASVQV	10	Unmodified	_VFPTSASVQV_					0	0	0		ENSG00000108510|ENST00000397786|MED13;ENST00000582786.1_1_17:60032737-60033083:-|nuORF	ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.7819213867188	2	517.779482	1033.54441	0.86489	0.00044782	1.6813	0.00087055	2.5462	0.0013184	518.281671868075	67.751	1.9638	64.261	63.888	65.852	-3.4902					131	39	4	0	0	0	0.19075	1	5023	5023		95.815	7.6382	1	4272300			59617	2659	49149	49195	65413	65413					0.028980367233771176
VFPVRAVAL	9	Unmodified	_VFPVRAVAL_					0	0	0		ENST00000300648.6_1_12:120621448-120621924:-|nuORF	ENST00000300648.6_1_12:120621448-120621924:-|nuORF	ENST00000300648.6_1_12:120621448-120621924:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	486.3054504394531	2	486.30547	970.596387	-1.0237	-0.00049782	0.68907	0.0003351	-0.3346	-0.00016272	486.3057082440577	120.4	1.6293	120.23	119.94	121.57	-0.17138					88	32	4	0	0	0	0.61208	1	11651	11651		30.504	3.7075	1	594410			59618	10174	49150	49196	65414	65414					0.10991244927799926
VFPVREKN	8	Unmodified	_VFPVREKN_					0	0	0			REV__ENSG00000105851|ENST00000496166|PIK3CG	REV__ENSG00000105851|ENST00000496166|PIK3CG	MULTI-MSMS	OvCa9_classI_Rep2	2	494.78216552734375	2	494.782359	987.550165	-1.0978	-0.00054319	0.84812	0.00041963	-0.24972	-0.00012356	494.7826271232193	61.627	1.8441	58.867	58.04	59.884	-2.7593					92	35	4	0	0	0	0.60331	1	4590	4590		63.306	11.971	1	363280	+		59619	17761	49151	49197	65415	65415					0.05589180025708629
VFQDRQYQI	9	Unmodified	_VFQDRQYQI_					0	0	0		nc|ENSG00000158290|Q13620-3|CUL4B;ENSG00000158290|ENST00000371322|CUL4B;nc|ENSG00000158290|Q13620|CUL4B;nc|ENSG00000139842|Q13619-2|CUL4A;ENSG00000139842|ENST00000375440|CUL4A	nc|ENSG00000158290|Q13620-3|CUL4B	nc|ENSG00000158290|Q13620-3|CUL4B	MULTI-MSMS	OvCa99_classI_Rep5	1	598.8075561523438	2	598.806562	1195.59857	2.3258	0.0013927	-0.2787	-0.00016688	2.0471	0.0012258	598.8061020346853	77.052	0.99039	77.052	76.639	77.629	0					49	23	4	0	0	0	0.070405	1	7753	7753		107.01	5.4068	1	1612300			59620	5942	49152	49198	65416	65416					0.008596288749458836
VFQDVAQKI	9	Unmodified	_VFQDVAQKI_					0	0	0		nc|ENSG00000157985|Q9UPQ3-3|AGAP1;nc|ENSG00000157985|Q9UPQ3-2|AGAP1;ENSG00000157985|ENST00000304032|AGAP1	nc|ENSG00000157985|Q9UPQ3-3|AGAP1	nc|ENSG00000157985|Q9UPQ3-3|AGAP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.2977294921875	2	524.295299	1046.57605	-1.345	-0.00070517	1.8057	0.00094673	0.46073	0.00024156	524.2963346453154	117.9	1.5252	116.55	116.21	117.73	-1.3444					53	28	4	0	0	0	0.10363	1	11036	11036		96.19	0	1	1011100			59621	5923	49153	49199	65417	65417					0.05462029477325814
VFQEMYIC	8	Unmodified	_VFQEMYIC_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.801025390625	2	516.730089	1031.44562	-0.12441	-6.4285E-05	-3.7077	-0.0019159	-3.8321	-0.0019802	516.7278953433604	64.246	1.2166	60.771	60.393	61.61	-3.475					41	24	3	0	0	0	0.028476	1	4660	4660		13.775	0	1	94548			59622	8768	49154	49200	65418	65418					-0.06884025837507579
VFQGAPKTVV	10	Unmodified	_VFQGAPKTVV_					0	0	0		ENST00000433302.7_1_17:5357282-5372070:-|nuORF	ENST00000433302.7_1_17:5357282-5372070:-|nuORF	ENST00000433302.7_1_17:5357282-5372070:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3035888671875	2	523.305667	1044.59678	-0.69596	-0.0003642	-3.2951	-0.0017244	-3.9911	-0.0020886	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.74374	1	13750	13750		25.574	3.6142	1	130240			59623	11829	49155	49201	65419	65419					0.0762661985700106
VFQGVGCGA	9	Unmodified	_VFQGVGCGA_					0	0	0			REV__ENST00000397358.7_1_8:28748272-28748464:+|nuORF	REV__ENST00000397358.7_1_8:28748272-28748464:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	419.1981506347656	2	419.199813	836.385073	-0.68643	-0.00028775	-3.1691	-0.0013285	-3.8556	-0.0016162	419.1983518447222	49.852	2.9249	47.058	46.686	49.611	-2.794					110	58	3	0	0	0	0.42057	1	3177	3177		50.025	0	1	731490	+		59624	25351	49156	49202	65420	65420					-0.03966375105596853
VFQILDSKLF	10	Unmodified	_VFQILDSKLF_					0	0	0		ENSG00000064763|ENST00000536681|FAR2	ENSG00000064763|ENST00000536681|FAR2	ENSG00000064763|ENST00000536681|FAR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	604.8448486328125	2	605.347532	1208.68051	1.4477	0.00087636	-4.4234	-0.0026777	-2.9757	-0.0018013	605.3448467461735	132.87	0.5188	132.87	132.65	133.17	0					18	10	2	0	0	0	0.026956	1	15449	15449		19.997	0	1	187520			59625	1306	49157	49203	65421	65421					0.08451731234026738
VFQSLAAS	8	Unmodified	_VFQSLAAS_					0	0	0			REV__ENSG00000054793|ENST00000338821|ATP9A	REV__ENSG00000054793|ENST00000338821|ATP9A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	412.23236083984375	2	411.721436	821.428318	0.43044	0.00017722	-0.30031	-0.00012364	0.13014	5.3581E-05	411.721282730187	66.675	0.73807	63.185	62.951	63.689	-3.4902					23	14	3	0	0	0	0.028476	1	4853	4853		24.203	0	1	50757	+		59626	16703	49158	49204	65422	65422					0.010461379433309048
VFQSVRTAVEV	11	Unmodified	_VFQSVRTAVEV_					0	0	0			REV__ENST00000396846.7_1_16:3447471-3447711:-|nuORF	REV__ENST00000396846.7_1_16:3447471-3447711:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	412.2314453125	3	412.231189	1233.67174	1.8624	0.00076774	-0.68691	-0.00028317	1.1755	0.00048458	412.2308612365413	65.473	2.1985	62.778	62.262	64.461	-2.6958					106	43	3	0	0	0	0.69455	1	5047	5047		27.644	0	1	733070	+		59627	25338	49159	49205	65423	65423					0.06424757597551434
VFQVLVVYL	9	Unmodified	_VFQVLVVYL_					0	0	0			REV__sp|P09729|US09_HCMVAUniqueshortUS9glycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=US9PE=3SV=1	REV__sp|P09729|US09_HCMVAUniqueshortUS9glycoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=US9PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3303833007812	2	540.328611	1078.64267	0.34656	0.00018726	2.5593	0.0013829	2.9059	0.0015701	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.50066	1	13746	13746		42.474	5.3154	1	342200	+		59628	29394	49160	49206	65424	65424					0.1064926503922834
VFQYEHILSF	10	Unmodified	_VFQYEHILSF_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	OvCa99_classI_Rep5	1	428.21942138671875	3	428.220401	1281.63937	-0.24555	-0.00010515	-2.4396	-0.0010447	-2.6852	-0.0011499	428.2193867744313	38.772	2.0402	38.772	38.486	40.526	0					115	45	6	0	0	0	0.64697	2	2275	2224;2275		36.447	8.3653	1	8888100			59629	5231	49161	49207	65425;65426	65426					0.009819701945616544
VFQYFTQV	8	Unmodified	_VFQYFTQV_					0	0	0			REV__tr|A0A553SMP9|A0A553SMP9_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22990PE=3SV=1	REV__tr|A0A553SMP9|A0A553SMP9_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_22990PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.801025390625	2	516.263468	1030.51238	-0.04545	-2.3464E-05	-3.8765	-0.0020013	-3.922	-0.0020248	516.2610549965999	64.839	0.82228	61.354	61.018	61.84	-3.4854					47	16	4	0	0	0	0.028476	1	4660	4660		31.955	0	1	236770	+		59630	30357	49162	49208	65427	65427					-0.0016533095977138146
VFREKILHIQ	10	Unmodified	_VFREKILHIQ_					0	0	0		nc|ENSG00000107201|O95786-2|RIGI;ENSG00000107201|ENST00000379883|RIGI	nc|ENSG00000107201|O95786-2|RIGI	nc|ENSG00000107201|O95786-2|RIGI	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8821411132812	2	641.885147	1281.75574	-1.8585	-0.0011929	-2.0743	-0.0013315	-3.9328	-0.0025244	641.8836457762243	148.91	0.99602	147.48	146.88	147.87	-1.4344					50	20	3	0	0	0	0.81992	1	14664	14664		16.473	1.6083	1	64864			59631	2596	49163	49209	65428	65428					0.12613333485137446
VFRGYAMAAL	10	Unmodified	_VFRGYAMAAL_					0	0	0			REV__ENSG00000172459|ENST00000624596|OR5AR1	REV__ENSG00000172459|ENST00000624596|OR5AR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.8175659179688	2	549.791869	1097.56919	1.2425	0.00068312	1.2392	0.00068131	2.4817	0.0013644	549.7925601618726	74.74	0.4025	74.74	74.478	74.88	0					14	9	2	0	0	0	0.027147	1	7379	7379		21.96	0	1	169020	+		59632	21700	49164	49210	65429	65429					0.02430393325107616
VFRKKHQKP	9	Unmodified	_VFRKKHQKP_					0	0	0		ENSG00000234828|ENST00000636793|IQCM	ENSG00000234828|ENST00000636793|IQCM	ENSG00000234828|ENST00000636793|IQCM	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3563842773438	2	584.359099	1166.70365	-2.312	-0.0013511	-2.2933	-0.0013401	-4.6053	-0.0026912	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.6959	1	14542	14542		19.36	4.4951	1	180810			59633	9302	49165	49211	65430	65430					0.1269621486203505
VFRKKHQKP	9	Unmodified	_VFRKKHQKP_					0	0	0		ENSG00000234828|ENST00000636793|IQCM	ENSG00000234828|ENST00000636793|IQCM	ENSG00000234828|ENST00000636793|IQCM	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.356689453125	2	584.359099	1166.70365	-1.7162	-0.0010029	-2.8243	-0.0016504	-4.5405	-0.0026533	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.6653	1	14526	14526		24.203	1.1603	1	833330			59634	9302	49165	49211	65431	65431					0.1269621486203505
VFRKTRKRWNR	11	Unmodified	_VFRKTRKRWNR_					0	0	0		ENST00000476966.5_1_1:156383609-156383882:-|nuORF	ENST00000476966.5_1_1:156383609-156383882:-|nuORF	ENST00000476966.5_1_1:156383609-156383882:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	516.3070068359375	3	516.31117	1545.91168	-4.8011	-0.0024789	2.0617	0.0010645	-2.7394	-0.0014144	516.3122700311526	161.49	2.0313	161.27	159.91	161.94	-0.22696					101	40	4	0	0	0	0.72582	1	16465	16465		1.4188	0	1	52729			59635	12473	49166	49212	65432	65432					0.1605621677911131
VFRNAASF	8	Unmodified	_VFRNAASF_					0	0	0		ENSG00000147872|ENST00000276914|PLIN2;PLIN2|p.Q379Lfs*8|1|0.08|ENSG00000147872|chr9:19116426-19116427|-/TGTTTTCATGGAGA|frameshift_variant;ENST00000464326.1_1_9:19108613-19116611:-|nuORF	ENSG00000147872|ENST00000276914|PLIN2	ENSG00000147872|ENST00000276914|PLIN2	MULTI-MSMS	OvCa99_classI_Rep5	1	456.2419128417969	2	456.240327	910.466101	-0.8412	-0.00038379	0.70723	0.00032267	-0.13397	-6.1123E-05	456.2404228096246	65.656	0.63251	65.656	65.426	66.059	0					39	15	3	0	0	0	0.17531	1	6041	6041		128.86	13.402	1	2300600			59636	5378	49167	49213	65433	65433					0.00728648928804887
VFRPPIIL	8	Unmodified	_VFRPPIIL_					0	0	0			REV__ENST00000511950.1_1_4:120376187-120379216:+|nuORF	REV__ENST00000511950.1_1_4:120376187-120379216:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.7773742675781	2	477.810388	953.606223	0.34566	0.00016516	1.5229	0.00072768	1.8686	0.00089284	477.8112301958979	43.591	0.24816	40.882	40.658	40.906	-2.7097					5	4	2	0	0	0	0.028476	1	2427	2427		60.294	0	1	8968.8	+		59637	26965	49168	49214	65434	65434					0.12756432933190354
VFRTDYVIFI	10	Unmodified	_VFRTDYVIFI_					0	0	0			REV__ENSG00000163810|ENST00000296125|TGM4	REV__ENSG00000163810|ENST00000296125|TGM4	MULTI-SECPEP	OvCa99_classI_Rep5	1	636.2581176757812	2	636.852981	1271.69141	2.8463	0.0018127	1.7818	0.0011347	4.6281	0.0029474	637.3548180895153	121.34	0.50877	121.34	121.25	121.75	0					13	10	2	0	0	0	0.026688	1	13985	13985		13.454	0	1	124920	+		59638	20893	49169	49215	65435	65435					0.06643133608326934
VFRTLVSQI	9	Unmodified	_VFRTLVSQI_					0	0	0		ENSG00000111913|ENST00000643898|RIPOR2;nc|ENSG00000111913|Q9Y4F9|RIPOR2	ENSG00000111913|ENST00000643898|RIPOR2	ENSG00000111913|ENST00000643898|RIPOR2	MULTI-MSMS	OvCa9_classI_Rep2	2	531.817138671875	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.64427	1	13911	13911		26.693	1.1189	1	166960			59639	2868	49170	49216	65436	65436					0.09498308748334239
VFRYKYRRWRQ	11	Unmodified	_VFRYKYRRWRQ_					0	0	0			REV__ENSG00000155542|ENST00000285947|SETD9	REV__ENSG00000155542|ENST00000285947|SETD9	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.3196411132812	3	553.311059	1656.91135	-0.26282	-0.00014542	-3.5538	-0.0019664	-3.8167	-0.0021118	553.3091317120401	29.955	0.25117	29.955	29.785	30.036	0					9	4	3	0	0	0	0.026553	1	1110	1110		3.2113	1.7926	1	19590	+		59640	20429	49171	49217	65437	65437					0.1091679705923525
VFSAPIKMSE	10	Unmodified	_VFSAPIKMSE_					0	0	0			REV__tr|A0A553SFB9|A0A553SFB9_NIACIHigh-affinityhemeuptakesystemproteinIsdEOS=NialliacirculansOX=1397GN=isdEPE=3SV=1	REV__tr|A0A553SFB9|A0A553SFB9_NIACIHigh-affinityhemeuptakesystemproteinIsdEOS=NialliacirculansOX=1397GN=isdEPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.3279418945312	2	554.788992	1107.56343	1.6955	0.00094064	0.21369	0.00011855	1.9092	0.0010592	555.2905158720603	85.567	0.14426	82.921	82.8	82.945	-2.6463					4	2	2	0	0	0	0.026602	1	7196	7196		56.434	0	1	46158	+		59641	29561	49172	49218	65438	65438					0.013952500227787823
VFSFFVHNV	9	Unmodified	_VFSFFVHNV_					0	0	0		ENSG00000158220|ENST00000389567|ESYT3;ENST00000486831.5_1_3:138153640-138188991:+|nuORF	ENSG00000158220|ENST00000389567|ESYT3	ENSG00000158220|ENST00000389567|ESYT3	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.2986450195312	2	548.284734	1094.55492	1.9897	0.0010909	-2.4722	-0.0013555	-0.48248	-0.00026453	548.2823997207721	82.272	0.84744	82.272	82.101	82.949	0					23	19	2	0	0	0	0.027462	1	8576	8576		26.693	0	1	445130			59642	5938	49173	49219	65439	65439					0.011420641684708244
VFSIPEGQKLF	11	Unmodified	_VFSIPEGQKLF_					0	0	0		ENST00000465102.5_1_7:5254197-5262304:+|nuORF;nc|ENSG00000157954|Q9Y4P8-3|WIPI2;ENST00000466014.5_1_7:5232953-5270575:+|nuORF;nc|ENSG00000157954|Q9Y4P8-2|WIPI2;nc|ENSG00000157954|Q9Y4P8-4|WIPI2;nc|ENSG00000157954|Q9Y4P8-5|WIPI2;nc|ENSG00000157954|Q9Y4P8-6|WIPI2;ENSG00000157954|ENST00000288828|WIPI2;ENST00000488359.1_1_7:5256722-5265562:+|nuORF	ENST00000465102.5_1_7:5254197-5262304:+|nuORF	ENST00000465102.5_1_7:5254197-5262304:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	632.85107421875	2	632.850438	1263.68632	1.2659	0.00080115	-0.27576	-0.00017452	0.99017	0.00062663	632.8500489645866	151.19	0.71045	151.19	150.84	151.55	0					37	12	4	0	0	0	0.41398	1	17690	17690		60.118	5.3959	1	131540			59643	5921	49174	49220	65440	65440					0.0650282974570473
VFSPRPSLL	9	Unmodified	_VFSPRPSLL_					0	0	0			REV__ENST00000265896.9_1_8:126010981-126011170:+|nuORF	REV__ENST00000265896.9_1_8:126010981-126011170:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	508.302978515625	2	508.300384	1014.58622	1.47	0.00074719	0.99347	0.00050498	2.4634	0.0012522	508.3008087559392	88.242	3.2882	86.874	85.079	88.367	-1.3676					151	65	4	0	0	0	0.1804	2	7703	7698;7703		79.713	10.085	1	1204300	+		59644	24037	49175	49221	65441;65442	65442					0.07950637202577582
VFSPRPSLL	9	Unmodified	_VFSPRPSLL_					0	0	0			REV__ENST00000265896.9_1_8:126010981-126011170:+|nuORF	REV__ENST00000265896.9_1_8:126010981-126011170:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	508.3024597167969	2	508.300384	1014.58622	-0.75191	-0.0003822	3.3863	0.0017213	2.6344	0.0013391	508.3020452283535	89.004	2.3018	86.873	86.112	88.414	-2.1309					130	45	4	0	0	0	0.14998	1	5436	5436		84.916	10.941	1	1985700	+		59645	24037	49175	49221	65443	65443					0.07950637202577582
VFSPRPSLL	9	Unmodified	_VFSPRPSLL_					0	0	0			REV__ENST00000265896.9_1_8:126010981-126011170:+|nuORF	REV__ENST00000265896.9_1_8:126010981-126011170:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.3029479980469	2	508.300384	1014.58622	-0.06012	-3.0559E-05	2.5599	0.0013012	2.4998	0.0012707	508.30166355972597	89.428	2.3042	86.841	86.1	88.404	-2.5874					123	45	4	0	0	0	0.083631	2	7646	7646;7658		101.6	7.5943	1	1748000	+		59646	24037	49175	49221	65444;65445	65444					0.07950637202577582
VFSPRPSLL	9	Unmodified	_VFSPRPSLL_					0	0	0			REV__ENST00000265896.9_1_8:126010981-126011170:+|nuORF	REV__ENST00000265896.9_1_8:126010981-126011170:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.30328369140625	2	508.300384	1014.58622	-0.76496	-0.00038883	3.3715	0.0017138	2.6066	0.0013249	508.30206090776204	91.63	3.1704	89.087	88.142	91.312	-2.5425					143	63	4	0	0	0	0.28934	1	7902	7902		64.207	3.2353	1	903450	+		59647	24037	49175	49221	65446	65446					0.07950637202577582
VFSRIGPLN	9	Unmodified	_VFSRIGPLN_					0	0	0			REV__ENST00000535593.5_1_12:21654733-21668638:+|nuORF	REV__ENST00000535593.5_1_12:21654733-21668638:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.26104736328125	2	501.790184	1001.56581	1.5788	0.00079223	1.0949	0.00054943	2.6737	0.0013417	501.790575063021	92.417	0.71056	92.417	92.052	92.762	0					34	16	3	0	0	0	0.027455	1	9984	9984		26.693	0	1	1011000	+		59648	18050	49176	49222	65447	65447					0.06509466542763676
VFSTVVIHF	9	Unmodified	_VFSTVVIHF_					0	0	0		nc|ENSG00000113161|P04035-2|HMGCR;ENSG00000113161|ENST00000287936|HMGCR;nc|ENSG00000113161|P04035-3|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	nc|ENSG00000113161|P04035-2|HMGCR	MULTI-MSMS	OvCa99_classI_Rep5	1	524.79345703125	2	524.794935	1047.57532	2.1329	0.0011194	0.49052	0.00025742	2.6235	0.0013768	524.7949396631067	121.13	1.4362	121.13	120.87	122.31	0					72	31	5	0	0	0	0.048552	2	13922	13922;13946		119.56	64.053	1	1473000			59649	2951	49177	49223	65448;65449	65448					0.05343234828274035
VFSVYLSNL	9	Unmodified	_VFSVYLSNL_					0	0	0		nc|ENSG00000096088|P20142-2|PGC	nc|ENSG00000096088|P20142-2|PGC	nc|ENSG00000096088|P20142-2|PGC	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.2833251953125	2	521.2844	1040.55425	-1.1175	-0.00058251	-3.2664	-0.0017027	-4.3839	-0.0022852	521.2827229081506	70.873	2.6683	67.416	67.008	69.676	-3.4563					119	54	3	0	0	0	0.48047	1	5413	5413		44.377	5.1244	1	8738000			59650	14922	49178	49224	65450	65450					0.035592247287468126
VFSYWWRRKQL	11	Unmodified	_VFSYWWRRKQL_					0	0	0		MST1R|p.F1128Wfs*30|1|0.12|ENSG00000164078|chr3:49891550-49891551|-/TTACTGTTCC|frameshift_variant;MST1R|p.D1208Efs*20|1|0.82|ENSG00000164078|chr3:49891217-49891218|-/GTAC|frameshift_variant;nc|ENSG00000164078|Q04912-7|MST1R;nc|ENSG00000164078|Q04912-2|MST1R;ENSG00000164078|ENST00000296474|MST1R	MST1R|p.F1128Wfs*30|1|0.12|ENSG00000164078|chr3:49891550-49891551|-/TTACTGTTCC|frameshift_variant	MST1R|p.F1128Wfs*30|1|0.12|ENSG00000164078|chr3:49891550-49891551|-/TTACTGTTCC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.8070068359375	3	523.62101	1567.8412	0.16264	8.5163E-05	2.0841	0.0010913	2.2467	0.0011764	523.6220069426289	78.172	1.7347	76.432	76.039	77.774	-1.7398					60	33	2	0	0	0	0.02625	1	6581	6581		24.232	10.146	1	121050			59651	6403	49179	49225	65451	65451					0.07999498670756111
VFTAAFAVVLI	11	Unmodified	_VFTAAFAVVLI_					0	0	0			REV__tr|A0A553SLE1|A0A553SLE1_NIACIDUF475domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20490PE=3SV=1	REV__tr|A0A553SLE1|A0A553SLE1_NIACIDUF475domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20490PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.842041015625	2	575.847167	1149.67978	-2.8608	-0.0016474	-4.0802	-0.0023496	-6.941	-0.0039969	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.70865	1	14666	14666		26.693	0	1	356230	+		59652	30215	49180	49226	65452	65452					0.11092936585009738
VFTEKALEL	9	Unmodified	_VFTEKALEL_					0	0	0			REV__nc|ENSG00000104131|O75822-2|EIF3J	REV__nc|ENSG00000104131|O75822-2|EIF3J	MULTI-MSMS	OvCa99_classI_Rep5	1	525.2938232421875	2	525.297507	1048.58046	0.69806	0.00036669	1.187	0.00062353	1.8851	0.00099022	525.2977804234142	139.49	0.53229	139.49	139.12	139.66	0					18	10	3	0	0	0	0.28934	1	16282	16282		64.207	4.089	1	84584	+		59653	28778	49181	49227	65453	65453					0.05811493900228015
VFTEVANLF	9	Unmodified	_VFTEVANLF_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B;SIN3B|p.G223A|1|0.07|ENSG00000127511|chr19:16847055-16847055|G/C|missense_variant;nc|ENSG00000127511|O75182-3|SIN3B;SIN3B|p.E481Lfs*18|1|0.11|ENSG00000127511|chr19:16863757-16863758|-/CTGAGATGGTTGCTGTCTGACCCTTTGCAGA|frameshift_variant	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	MULTI-MSMS	OvCa99_classI_Rep5	1	520.2778930664062	2	520.276575	1038.5386	0.71333	0.00037113	1.0902	0.00056721	1.8035	0.00093834	520.2770143543554	145.55	1.535	145.55	145.18	146.72	0					69	31	4	0	0	0	0.045281	2	17023	17002;17023		122.18	28.17	1	536440			59654	3836	49182	49228	65454;65455	65455					0.020869382116870838
VFTGLLKPI	9	Unmodified	_VFTGLLKPI_					0	0	0			REV__ENSG00000221931|ENST00000327930|OR6X1	REV__ENSG00000221931|ENST00000327930|OR6X1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.29583740234375	2	494.315503	986.616454	-0.58377	-0.00028857	-3.7034	-0.0018306	-4.2871	-0.0021192	494.31320769203893	92.177	0.45813	89.635	89.364	89.822	-2.5425					10	8	2	0	0	0	0.027418	1	8012	8012		58.782	23.164	1	17362	+		59655	23347	49183	49229	65456	65456					0.12260995867757174
VFTKSIPIMA	10	Unmodified	_VFTKSIPIMA_					0	0	0			REV__tr|A0A553SUS9|A0A553SUS9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_06750PE=4SV=1	REV__tr|A0A553SUS9|A0A553SUS9_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_06750PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8199462890625	2	553.817553	1105.62055	0.35055	0.00019414	3.0198	0.0016724	3.3703	0.0018665	553.8191095428485	32.261	1.2872	29.551	29.233	30.52	-2.7097					61	25	4	0	0	0	0.69986	1	1079	1079		30.504	1.3541	1	380430	+		59656	31118	49184	49230	65457	65457					0.07196717299166266
VFTNSSWLW	9	Unmodified	_VFTNSSWLW_					0	0	0		ENST00000503467.1_1_4:17587853-17609209:+|nuORF;nc|ENSG00000002549|P28838-2|LAP3;ENSG00000002549|ENST00000226299|LAP3	ENST00000503467.1_1_4:17587853-17609209:+|nuORF	ENST00000503467.1_1_4:17587853-17609209:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	570.2810668945312	2	570.279649	1138.54475	1.1163	0.0006366	-0.92738	-0.00052887	0.18891	0.00010773	570.2789392973547	150.22	1.711	150.22	149.89	151.6	0					69	33	4	0	0	0	0.068524	3	17594	17571;17594;17619		108.09	25.337	1	736260			59657	810	49185	49231	65458;65459;65460	65459					-0.018985435567628883
VFTQSTDLL	9	Unmodified	_VFTQSTDLL_					0	0	0			REV__ENSG00000058335|ENST00000558480|RASGRF1	REV__ENSG00000058335|ENST00000558480|RASGRF1	MULTI-MSMS	OvCa99_classI_Rep5	1	512.2734985351562	2	512.27149	1022.52843	1.2042	0.00061687	-0.36326	-0.00018609	0.84093	0.00043078	512.2711634540926	143.63	2.7616	143.63	141.83	144.6	0					129	55	4	0	0	0	0.65371	1	16859	16859		25.574	0.12388	1	558690	+		59658	16727	49186	49232	65461	65461					0.018063304864881502
VFTRLIPVL	9	Unmodified	_VFTRLIPVL_					0	0	0			REV__nc|ENSG00000076555|O00763-3|ACACB	REV__nc|ENSG00000076555|O00763-3|ACACB	MULTI-MSMS	OvCa99_classI_Rep5	1	529.3408203125	2	529.342052	1056.66955	0.86524	0.00045801	2.4618	0.0013032	3.3271	0.0017612	529.3427007082557	139.55	1.7094	139.55	139.22	140.93	0					119	35	5	0	0	0	0.46377	1	16321	16321		45.952	0	1	1514600	+		59659	16994	49187	49233	65462	65462					0.14348373650409485
VFTRMFFPL	9	Unmodified	_VFTRMFFPL_					0	0	0		ENST00000295628.3_1_3:120050110-120050173:-|nuORF	ENST00000295628.3_1_3:120050110-120050173:-|nuORF	ENST00000295628.3_1_3:120050110-120050173:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	579.3148193359375	2	579.312438	1156.61032	3.0753	0.0017816	-2.1301	-0.001234	0.94529	0.00054762	579.3110749799329	97.689	0.9416	97.689	97.18	98.121	0					58	21	4	0	0	0	0.27001	1	10753	10753		66.429	6.311	1	3232600			59660	10122	49188	49234	65463	65463					0.0382815436457804
VFTSTHELGSF	11	Unmodified	_VFTSTHELGSF_					0	0	0			REV__ENSG00000160294|ENST00000291688|MCM3AP	REV__ENSG00000160294|ENST00000291688|MCM3AP	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.8791809082031	3	408.868027	1223.58225	0.51348	0.00020995	-1.7935	-0.00073329	-1.28	-0.00052335	408.86768957730476	59.741	0.30582	59.741	59.533	59.839	0					11	7	2	0	0	0	0.025668	1	5176	5176		35.178	13.398	1	377950	+		59661	20653	49189	49235	65464	65464					-0.02059497081813788
VFTSVTKTVPV	11	Unmodified	_VFTSVTKTVPV_					0	0	0			REV__HAVCR1|p.T206K|1|0.07|ENSG00000113249|chr5:157052417-157052417|G/T|missense_variant	REV__HAVCR1|p.T206K|1|0.07|ENSG00000113249|chr5:157052417-157052417|G/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3433837890625	2	589.344989	1176.67542	-3.0463	-0.0017953	-0.38122	-0.00022467	-3.4276	-0.00202	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.72466	1	14975	14975		19.997	1.7347	1	272220	+		59662	28195	49190	49236	65465	65465					0.09415427371413898
VFTVLAILGSN	11	Unmodified	_VFTVLAILGSN_					0	0	0			REV__ENSG00000181927|ENST00000641760|OR4P4	REV__ENSG00000181927|ENST00000641760|OR4P4	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3295288085938	2	567.331882	1132.64921	-3.474	-0.0019709	-0.21845	-0.00012393	-3.6925	-0.0020949	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.69081	1	12155	12155		32.812	0	1	458690	+		59663	22252	49191	49237	65466	65466					0.0881915819995811
VFTVRAEVP	9	Unmodified	_VFTVRAEVP_					0	0	0			REV__ENSG00000160161|ENST00000291495|CILP2	REV__ENSG00000160161|ENST00000291495|CILP2	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.30279541015625	2	509.290017	1016.56548	-0.94254	-0.00048002	0.6426	0.00032727	-0.29993	-0.00015275	509.290199420438	90.903	0.90993	88.822	88.567	89.477	-2.0805					35	17	3	0	0	0	0.027433	1	5702	5702		64.207	8.7031	1	65729	+		59664	20641	49192	49238	65467	65467					0.05786046822890967
VFTYTLPQLKF	11	Unmodified	_VFTYTLPQLKF_					0	0	0			REV__ENST00000269701.6_1_19:15465203-15465326:-|nuORF	REV__ENST00000269701.6_1_19:15465203-15465326:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	452.26080322265625	3	452.923585	1355.74892	0.72771	0.0003296	-4.4561	-0.0020183	-3.7284	-0.0016887	453.25564877999767	45.495	0.51392	45.495	45.068	45.582	0					13	11	2	0	0	0	0.026189	1	3114	3114		14.694	11.668	1	52197	+		59665	24067	49193	49239	65468	65468					0.08527975813899502
VFTYVGALF	9	Unmodified	_VFTYVGALF_					0	0	0		nc|ENSG00000115310|Q9NQC3-4|RTN4;nc|ENSG00000115310|Q9NQC3-6|RTN4;ENSG00000115310|ENST00000337526|RTN4;nc|ENSG00000115310|Q9NQC3-3|RTN4;nc|ENSG00000115310|Q9NQC3-2|RTN4;nc|ENSG00000115310|Q9NQC3-5|RTN4	nc|ENSG00000115310|Q9NQC3-4|RTN4	nc|ENSG00000115310|Q9NQC3-4|RTN4	MULTI-MSMS	OvCa99_classI_Rep5	1	509.27752685546875	2	508.776211	1015.53787	1.0269	0.00052246	1.2048	0.00061298	2.2317	0.0011354	508.7765559243982	154.2	1.1938	154.2	153.78	154.98	0					47	23	3	0	0	0	0.22913	1	18054	18054		71.378	2.5911	1	316470			59666	3085	49194	49240	65469	65469					0.030721435626787752
VFVGIVLGNLL	11	Unmodified	_VFVGIVLGNLL_					0	0	0		ENSG00000176253|ENST00000641904|OR4K13	ENSG00000176253|ENST00000641904|OR4K13	ENSG00000176253|ENST00000641904|OR4K13	MULTI-MSMS	OvCa9_classI_Rep3	3	572.3585205078125	2	572.360442	1142.70633	0.633	0.0003623	-2.8034	-0.0016046	-2.1704	-0.0012423	572.3586945598181	65.982	0.86411	63.036	62.806	63.67	-2.9459					34	16	3	0	0	0	0.72459	1	2685	2685		20.947	0.95016	1	43652			59667	7595	49195	49241	65470	65470					0.14068625476329544
VFVGIVLGNLL	11	Unmodified	_VFVGIVLGNLL_					0	0	0		ENSG00000176253|ENST00000641904|OR4K13	ENSG00000176253|ENST00000641904|OR4K13	ENSG00000176253|ENST00000641904|OR4K13	MULTI-MATCH	OvCa9_classI_Rep2	2		2	572.360442	1142.70633	0.33409	0.00019122	-3.2935	-0.0018851	-2.9594	-0.0016939	572.3583158498687	65.643	0.6989	62.947	62.62	63.319	-2.6958	-0.12948	-0.0006311	NaN	20.947	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28843			59668	7595	49195	49241							0.14068625476329544
VFVGIVLGNLL	11	Unmodified	_VFVGIVLGNLL_					0	0	0		ENSG00000176253|ENST00000641904|OR4K13	ENSG00000176253|ENST00000641904|OR4K13	ENSG00000176253|ENST00000641904|OR4K13	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	572.360442	1142.70633	-0.3022	-0.00017297	-2.3717	-0.0013575	-2.6739	-0.0015304	572.3590802763554	66.737	0.63962	63.247	63	63.64	-3.4902	0.17046	0.00042411	NaN	20.947	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25211			59669	7595	49195	49241							0.14068625476329544
VFVGKGITF	9	Unmodified	_VFVGKGITF_					0	0	0		ENST00000503467.1_1_4:17587853-17609209:+|nuORF;nc|ENSG00000002549|P28838-2|LAP3;ENSG00000002549|ENST00000226299|LAP3	ENST00000503467.1_1_4:17587853-17609209:+|nuORF	ENST00000503467.1_1_4:17587853-17609209:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	484.28643798828125	2	484.284203	966.553853	2.0496	0.00099259	0.85811	0.00041557	2.9077	0.0014082	484.28460544869444	100.17	0.66805	100.17	99.777	100.44	0					25	15	3	0	0	0	0.3076	1	11102	11102		62.107	7.2128	1	412610			59670	810	49196	49242	65471	65471					0.06923849799568416
VFVGNFLRI	9	Unmodified	_VFVGNFLRI_					0	0	0		nc|ENSG00000152782|Q8TE04|PANK1;ENSG00000152782|ENST00000307534|PANK1;nc|ENSG00000125779|Q9BZ23-2|PANK2;nc|ENSG00000152782|Q8TE04-3|PANK1;nc|ENSG00000152782|Q8TE04-2|PANK1;nc|ENSG00000152782|Q8TE04-4|PANK1;nc|ENSG00000125779|Q9BZ23-3|PANK2;ENSG00000125779|ENST00000610179|PANK2;nc|ENSG00000125779|Q9BZ23|PANK2	nc|ENSG00000152782|Q8TE04|PANK1	nc|ENSG00000152782|Q8TE04|PANK1	MULTI-MSMS	OvCa99_classI_Rep5	1	532.8150634765625	2	532.816202	1063.61785	0.0043467	2.316E-06	-3.1601	-0.0016838	-3.1558	-0.0016815	532.814361506412	68.981	0.61401	68.981	68.733	69.347	0					35	14	4	0	0	0	0.44294	1	6547	6547		47.916	5.0513	1	936630			59671	15101	49197	49243	65472	65472					0.08858629956512232
VFVGNFLRI	9	Unmodified	_VFVGNFLRI_					0	0	0		nc|ENSG00000152782|Q8TE04|PANK1;ENSG00000152782|ENST00000307534|PANK1;nc|ENSG00000125779|Q9BZ23-2|PANK2;nc|ENSG00000152782|Q8TE04-3|PANK1;nc|ENSG00000152782|Q8TE04-2|PANK1;nc|ENSG00000152782|Q8TE04-4|PANK1;nc|ENSG00000125779|Q9BZ23-3|PANK2;ENSG00000125779|ENST00000610179|PANK2;nc|ENSG00000125779|Q9BZ23|PANK2	nc|ENSG00000152782|Q8TE04|PANK1	nc|ENSG00000152782|Q8TE04|PANK1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	532.816202	1063.61785	0.82897	0.00044169	-0.21201	-0.00011296	0.61697	0.00032873	533.3181871547803	71.516	0.5964	68.914	68.584	69.18	-2.6023	-0.033788	0.0029028	NaN	47.916	15	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9408.7			59672	15101	49197	49243							0.08858629956512232
VFVKTRITA	9	Unmodified	_VFVKTRITA_					0	0	0			REV__ENSG00000128731|ENST00000261609|HERC2	REV__ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	OvCa9_classI_Rep2	2	517.8193359375	2	517.821484	1033.62842	-2.2306	-0.0011551	-1.8311	-0.0009482	-4.0617	-0.0021033	517.8203985316244	146.61	1.347	146.38	145.92	147.27	-0.22696					66	26	3	0	0	0	0.69895	1	14813	14813		18.324	1.8513	1	90796	+		59673	18868	49198	49244	65473	65473					0.1129461261095912
VFVLFAICWAP	11	Unmodified	_VFVLFAICWAP_					0	0	0		ENSG00000168412|ENST00000307161|MTNR1A	ENSG00000168412|ENST00000307161|MTNR1A	ENSG00000168412|ENST00000307161|MTNR1A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	633.3671875	2	633.341195	1264.66784	-2.7116	-0.0017174	-1.9653	-0.0012447	-4.6769	-0.0029621	633.339765454599	150.9	2.2282	149.46	148.02	150.25	-1.4344					118	48	3	0	0	0	0.025902	1	14877	14877		31.955	0	1	59509			59674	6906	49199	49245	65474	65474					0.04608996570163981
VFVLFGSLI	9	Unmodified	_VFVLFGSLI_					0	0	0		ENSG00000258083|ENST00000641559|OR9A4	ENSG00000258083|ENST00000641559|OR9A4	ENSG00000258083|ENST00000641559|OR9A4	MULTI-MSMS	OvCa99_classI_Rep5	1	497.8017578125	2	497.802229	993.589904	1.2092	0.00060192	-3.1761	-0.0015811	-1.967	-0.00097917	497.8004964460781	111.65	0.91527	111.65	111.33	112.25	0					46	19	4	0	0	0	0.52083	1	12706	12706		40.573	1.5511	1	1289100			59675	9477	49200	49246	65475	65475					0.09285306976426
VFVLIFKD	8	Unmodified	_VFVLIFKD_					0	0	0		tr|A0A553SIK9|A0A553SIK9_NIACIPolysaccharidebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_15065PE=4SV=1	tr|A0A553SIK9|A0A553SIK9_NIACIPolysaccharidebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_15065PE=4SV=1	tr|A0A553SIK9|A0A553SIK9_NIACIPolysaccharidebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_15065PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.80975341796875	2	490.794404	979.574254	0.27267	0.00013383	-3.2285	-0.0015845	-2.9558	-0.0014507	490.7926993898221	63.294	0.99216	63.294	63.058	64.051	0					47	24	3	0	0	0	0.028476	1	5734	5734		38.806	9.6566	1	2138900			59676	33393	49201	49247	65476	65476					0.08365020459382322
VFVMIVLPVY	10	Unmodified	_VFVMIVLPVY_					0	0	0			REV__ENSG00000169252|ENST00000305988|ADRB2	REV__ENSG00000169252|ENST00000305988|ADRB2	MULTI-SECPEP	OvCa99_classI_Rep5	1	590.8008422851562	2	590.345946	1178.67734	1.2869	0.00075972	3.6053	0.0021283	4.8922	0.0028881	590.3477908357434	143.69	0.69357	143.69	143.32	144.01	0					22	13	2	0	0	0	0.026672	1	16756	16756		44.531	18.957	1	192510	+		59677	21451	49202	49248	65477	65477					0.09514764855680369
VFVNIQYTL	9	Unmodified	_VFVNIQYTL_					0	0	0		ENST00000480452.5_1_21:38605608-38639601:-|nuORF;ENST00000399000.7_1_21:38604874-38639643:-|nuORF;ENSG00000157538|ENST00000309117|VPS26C	ENST00000480452.5_1_21:38605608-38639601:-|nuORF	ENST00000480452.5_1_21:38605608-38639601:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	548.8074340820312	2	548.8055	1095.59645	1.8168	0.00099707	0.034074	1.87E-05	1.8509	0.0010158	548.8052379084394	137.7	0.95464	137.7	137.45	138.4	0					44	20	3	0	0	0	0.38529	1	16079	16079		53.351	8.8204	1	380180			59678	5897	49203	49249	65478	65478					0.052472001371370425
VFVVILGDSG	10	Unmodified	_VFVVILGDSG_					0	0	0			REV__tr|A0A553STI4|A0A553STI4_NIACIFormate/nitritetransporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05035PE=4SV=1	REV__tr|A0A553STI4|A0A553STI4_NIACIFormate/nitritetransporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05035PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	502.300048828125	2	503.2844	1004.55425	-0.73258	-0.00036869	-1.3205	-0.00066458	-2.0531	-0.0010333	503.2833729324429	115.42	0.88831	114.38	113.76	114.65	-1.0414					21	17	2	0	0	0	0.026697	1	8542	8542		37.159	12.64	1	23316	+		59679	30967	49204	49250	65479	65479					0.052152247287722275
VFVVPPKPI	9	Unmodified	_VFVVPPKPI_					0	0	0			REV__tr|A0A553SL38|A0A553SL38_NIACIDiaminopimelatedecarboxylaseOS=NialliacirculansOX=1397GN=lysAPE=3SV=1	REV__tr|A0A553SL38|A0A553SL38_NIACIDiaminopimelatedecarboxylaseOS=NialliacirculansOX=1397GN=lysAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3160400390625	2	498.318046	994.621539	-0.044391	-2.2121E-05	-4.2549	-0.0021203	-4.2993	-0.0021424	498.3157300992715	110.05	1.7303	109.88	109.41	111.14	-0.17236					105	34	7	0	0	0	0.42057	1	10371	10371		50.025	0.58299	1	1087000	+		59680	30182	49205	49251	65480	65480					0.12401299730379378
VFVYILIGVP	10	Unmodified	_VFVYILIGVP_					0	0	0			REV__tr|A0A7D6ZGD0|A0A7D6ZGD0_9CLOTDUF4386domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17900PE=4SV=1	REV__tr|A0A7D6ZGD0|A0A7D6ZGD0_9CLOTDUF4386domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17900PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.3399658203125	2	560.344261	1118.67397	-5.405	-0.0030286	-1.7878	-0.0010018	-7.1928	-0.0040304	560.3432112723539	161.88	2.7705	160.26	159.52	162.29	-1.6239					146	74	5	0	0	0	0.73286	1	16036	16036		26.796	3.2734	1	403070	+		59681	31994	49206	49252	65481	65481					0.1193783807334512
VFWELLVL	8	Unmodified	_VFWELLVL_					0	0	0		nc|ENSG00000141497|Q9H091-2|ZMYND15;ENSG00000141497|ENST00000433935|ZMYND15;ENST00000571782.1_1_17:4647099-4647876:+|nuORF;nc|ENSG00000141497|Q9H091-3|ZMYND15	nc|ENSG00000141497|Q9H091-2|ZMYND15;nc|ENSG00000141497|Q9H091-3|ZMYND15	nc|ENSG00000141497|Q9H091-2|ZMYND15	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.8026123046875	2	509.802229	1017.5899	2.0238	0.0010317	0.96983	0.00049442	2.9936	0.0015261	509.80258654056354	136.53	4.9049	134.99	133.61	138.51	-1.5437					290	101	5	0	0	0	0.73288	1	13395	13395		35.201	4.6971	1	173450			59682	15062;15063	49207	49253	65482	65482					0.08181306976428004
VFWGTHVQ	8	Unmodified	_VFWGTHVQ_					0	0	0			REV__tr|A0A553SRS3|A0A553SRS3_NIACINa+/H+antiportersubunitAOS=NialliacirculansOX=1397GN=CEQ21_01800PE=3SV=1	REV__tr|A0A553SRS3|A0A553SRS3_NIACINa+/H+antiportersubunitAOS=NialliacirculansOX=1397GN=CEQ21_01800PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	487.2464599609375	2	487.248152	972.481751	-0.75518	-0.00036796	-3.2205	-0.0015692	-3.9757	-0.0019371	487.2464012536918	25.618	0.30106	25.618	25.442	25.743	0					14	5	3	0	0	0	0.71369	1	590	590		40.573	4.1259	1	96713	+		59683	30760	49208	49254	65483	65483					-0.0055906455414742595
VFWGVSFGSV	10	Unmodified	_VFWGVSFGSV_					0	0	0			REV__ENSG00000167680|ENST00000586582|SEMA6B	REV__ENSG00000167680|ENST00000586582|SEMA6B	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.7284545898438	2	542.776742	1083.53893	2.8502	0.001547	2.0407	0.0011077	4.8909	0.0026547	542.7776591838553	88.646	0.6591	88.646	88.384	89.043	0					31	13	3	0	0	0	0.02661	1	9464	9464		58.782	29.632	1	1504400	+		59684	21300	49209	49255	65484	65484					0.0005035793155911961
VFWLCEKV	8	Unmodified	_VFWLCEKV_					0	0	0			REV__nc|ENSG00000083642|Q9NTI5-2|PDS5B	REV__nc|ENSG00000083642|Q9NTI5-2|PDS5B	MULTI-MSMS	OvCa99_classI_Rep5	1	512.2721557617188	2	512.270238	1022.52592	1.2042	0.00061687	2.0792	0.0010651	3.2834	0.001682	512.2711634540926	143.63	2.7616	143.63	141.83	144.6	0					129	55	4	0	0	0	0.71369	1	16791	16791		40.573	4.9543	1	558690	+		59685	17107	49210	49256	65485	65485					0.015562035478183134
VFWLLGII	8	Unmodified	_VFWLLGII_					0	0	0		nc|ENSG00000005483|Q8IZD2-5|KMT2E	nc|ENSG00000005483|Q8IZD2-5|KMT2E	nc|ENSG00000005483|Q8IZD2-5|KMT2E	MULTI-MSMS	OvCa9_classI_Rep3	3	480.7975158691406	2	480.799489	959.584425	-0.37436	-0.00017999	-3.9767	-0.001912	-4.351	-0.002092	480.7973622689828	116.04	2.9694	115	114.65	117.62	-1.0414					124	59	3	0	0	0	0.64315	1	8646	8646		54.895	0	1	286570			59686	14858	49211	49257	65486	65486					0.1030162818460667
VFWLLGIIPH	10	Unmodified	_VFWLLGIIPH_					0	0	0		nc|ENSG00000005483|Q8IZD2-5|KMT2E	nc|ENSG00000005483|Q8IZD2-5|KMT2E	nc|ENSG00000005483|Q8IZD2-5|KMT2E	MULTI-MSMS	OvCa9_classI_Rep3	3	597.85546875	2	597.855327	1193.6961	-2.7036	-0.0016164	4.3745	0.0026153	1.6709	0.00099894	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.79715	1	12359	12359		19.36	0.25645	1	591030			59687	14858	49212	49258	65487	65487					0.10700062541741318
VFWRELRDNVI	11	Unmodified	_VFWRELRDNVI_					0	0	0		nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-2|ATP2C1	nc|ENSG00000017260|P98194-3|ATP2C1	nc|ENSG00000017260|P98194-3|ATP2C1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.2734069824219	3	482.933254	1445.77793	-2.0589	-0.00099431	-4.0052	-0.0019343	-6.0641	-0.0029286	482.93136759083154	49.226	0.93559	46.084	45.832	46.767	-3.1416					39	17	4	0	0	0	0.026324	1	2752	2752		21.78	8.2725	1	70515			59688	14865	49213	49259	65488	65488					0.07287513162896175
VFWRKKWTKIK	11	Unmodified	_VFWRKKWTKIK_					0	0	0			REV__nc|ENSG00000144824|Q86SQ0-2|PHLDB2	REV__nc|ENSG00000144824|Q86SQ0-2|PHLDB2	MULTI-MSMS	OvCa9_classI_Rep2	2	507.3098449707031	3	507.313518	1518.91872	-5.239	-0.0026578	-2.1451	-0.0010882	-7.3841	-0.0037461	507.3121827583452	162.21	1.6448	161.98	160.99	162.64	-0.22697					94	32	4	0	0	0	0.7257	1	16511	16511		6.3209	0.31984	1	66373	+		59689	19937	49214	49260	65489	65489					0.18002136606946806
VFWRKKWTKIK	11	Unmodified	_VFWRKKWTKIK_					0	0	0			REV__nc|ENSG00000144824|Q86SQ0-2|PHLDB2	REV__nc|ENSG00000144824|Q86SQ0-2|PHLDB2	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.3119201660156	3	507.313518	1518.91872	-6.7743	-0.0034367	-0.46911	-0.00023798	-7.2434	-0.0036747	507.3132483041696	164.06	2.2283	162.43	160.34	162.57	-1.6336					157	61	4	0	0	0	0.72573	1	16160	16160		6.001	2.382	1	124560	+		59690	19937	49214	49260	65490	65490					0.18002136606946806
VFWRRLLGLLP	11	Unmodified	_VFWRRLLGLLP_					0	0	0		ENSG00000087157|ENST00000262764|PGS1;PGS1|p.K158Rfs*53|1|0.03|ENSG00000087157|chr17:78398312-78398313|-/G|frameshift_variant;ENST00000585521.2_1_17:76374779-76411070:+|nuORF;PGS1|p.Y224Sfs*9|1|0.33|ENSG00000087157|chr17:78399507-78399507|A/-|frameshift_variant;nc|ENSG00000087157|Q32NB8-3|PGS1;nc|ENSG00000087157|Q32NB8-2|PGS1;nc|ENSG00000087157|Q32NB8-4|PGS1;ENST00000586325.5_1_17:76374746-76376988:+|nuORF	ENSG00000087157|ENST00000262764|PGS1	ENSG00000087157|ENST00000262764|PGS1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	456.7669677734375	3	457.28708	1368.83941	0.99632	0.0004556	2.4642	0.0011268	3.4605	0.0015824	457.2881318400119	35.963	0.5499	33.114	32.889	33.439	-2.849					16	10	2	0	0	0	0.026189	1	1198	1198		20.03	0	1	12277			59691	1765	49215	49261	65491	65491					0.16974489652830016
VFWVWVLLL	9	Unmodified	_VFWVWVLLL_					0	0	0			REV__L1PB1_dup441|chr1:149223496-149224383:+|1.3737885701039012|0.2382426944183741|2.53|427.0|35|2|anti-sense	REV__L1PB1_dup441|chr1:149223496-149224383:+|1.3737885701039012|0.2382426944183741|2.53|427.0|35|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.7747192382812	2	587.854796	1173.69504	0.86884	0.00051075	3.7374	0.0021971	4.6063	0.0027078	587.856940771986	81.002	0.66959	81.002	80.702	81.372	0					26	15	2	0	0	0	0.027462	1	8324	8324		21.702	0	1	401540	+		59692	28591	49216	49262	65492	65492					0.11513848172853614
VFYIKSIE	8	Unmodified	_VFYIKSIE_					0	0	0		ENSG00000136040|ENST00000258526|PLXNC1	ENSG00000136040|ENST00000258526|PLXNC1	ENSG00000136040|ENST00000258526|PLXNC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.7647399902344	2	499.781493	997.548434	-1.1615	-0.00058051	1.5524	0.00077588	0.39092	0.00019538	499.7827215937631	127.63	0.50833	126.19	125.99	126.5	-1.4357					21	9	4	0	0	0	0.028476	1	12166	12166		33.516	0	1	73860			59693	4449	49217	49263	65493	65493					0.049561262170982445
VFYKLLNTV	9	Unmodified	_VFYKLLNTV_					0	0	0		ENST00000591030.5_1_19:6477238-6481723:-|nuORF;ENST00000592543.5_1_19:6476946-6479902:-|nuORF;nc|ENSG00000205744|Q8IV53-2|DENND1C;ENSG00000205744|ENST00000381480|DENND1C	ENST00000591030.5_1_19:6477238-6481723:-|nuORF	ENST00000591030.5_1_19:6477238-6481723:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7937622070312	2	548.823692	1095.63283	2.2544	0.0012373	-1.1045	-0.00060616	1.1499	0.00063109	548.8232398961616	86.156	0.76717	86.156	85.912	86.679	0					29	18	2	0	0	0	0.027462	1	9143	9143		23.042	2.0956	1	1557800			59694	9085	49218	49264	65494	65494					0.0888407703384928
VFYLVRHLHL	10	Unmodified	_VFYLVRHLHL_					0	0	0			REV__ENST00000555953.1_1_14:31142550-31144373:+|nuORF	REV__ENST00000555953.1_1_14:31142550-31144373:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	432.9266357421875	3	432.92403	1295.75026	1.6734	0.00072447	3.8683	0.0016747	5.5418	0.0023992	432.9256048538329	64.918	2.5849	61.925	61.446	64.031	-2.9933					130	50	4	0	0	0	0.72142	1	2568	2568		28.081	7.0493	1	231790	+		59695	27552	49219	49265	65495	65495					0.11421654693322125
VFYLWSAI	8	Unmodified	_VFYLWSAI_					0	0	0		nc|ENSG00000074696|Q9P035-2|HACD3;ENSG00000074696|ENST00000261875|HACD3	nc|ENSG00000074696|Q9P035-2|HACD3	nc|ENSG00000074696|Q9P035-2|HACD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.8214111328125	2	499.770929	997.527304	1.2947	0.00064704	4.1138	0.0020559	5.4084	0.002703	500.2748496119694	109.85	0.26955	109.85	109.73	110	0					7	5	2	0	0	0	0.028476	1	12462	12462		54.765	2.4655	1	69966			59696	1516	49220	49266	65496	65496					0.028441609082278774
VFYPYPQYF	9	Unmodified	_VFYPYPQYF_					0	0	0		ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	ENSG00000103160|ENST00000219439|HSDL1	MULTI-MSMS	OvCa99_classI_Rep5	1	612.2944946289062	2	612.292225	1222.5699	0.75129	0.00046001	1.482	0.00090739	2.2333	0.0013674	612.293080600761	141.01	2.8708	141.01	140.49	143.37	0					183	57	5	0	0	0	0.037679	3	16478	16454;16478;16502		128.82	66.708	1	5613600			59697	2288	49221	49267	65497;65498;65499	65498					-0.032484887542068464
VFYRMHSVGGL	11	Unmodified	_VFYRMHSVGGL_					0	0	0		ENSG00000182938|ENST00000328801|OTOP3;nc|ENSG00000182938|Q7RTS5|OTOP3	ENSG00000182938|ENST00000328801|OTOP3	ENSG00000182938|ENST00000328801|OTOP3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	634.3250732421875	2	633.326608	1264.63866	0.1276	8.0813E-05	1.8668	0.0011823	1.9944	0.0012631	633.3278549103902	102.37	0.73689	100.17	99.727	100.46	-2.1994					18	13	2	0	0	0	0.025792	1	9204	9204		21.96	0	1	36000			59698	8041	49222	49268	65500	65500					0.016928522738453466
VFYRMHSVGGL	11	Unmodified	_VFYRMHSVGGL_					0	0	0		ENSG00000182938|ENST00000328801|OTOP3;nc|ENSG00000182938|Q7RTS5|OTOP3	ENSG00000182938|ENST00000328801|OTOP3	ENSG00000182938|ENST00000328801|OTOP3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	633.326608	1264.63866	-0.51924	-0.00032885	1.2197	0.00077244	0.70041	0.00044359	633.3267641965931	101.81	0.78641	100.29	99.951	100.74	-1.5211	0.058927	-0.000522	NaN	26.693	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36081			59699	8041	49222	49268							0.016928522738453466
VFYSWGDPTI	10	Unmodified	_VFYSWGDPTI_					0	0	0			REV__ENST00000504674.1_1_5:39720798-39721572:-|nuORF	REV__ENST00000504674.1_1_5:39720798-39721572:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	592.8132934570312	2	592.784764	1183.55498	2.1306	0.001263	3.6395	0.0021574	5.7701	0.0034204	593.287887070327	118.18	0.37302	118.18	118.02	118.39	0					9	7	2	0	0	0	0.026639	1	13530	13530		44.117	19.598	1	33406	+		59700	26862	49223	49269	65501	65501					-0.029459806221893814
VFYTVVTPLL	10	Unmodified	_VFYTVVTPLL_					0	0	0		ENSG00000176567|ENST00000320048|OR4X1	ENSG00000176567|ENST00000320048|OR4X1	ENSG00000176567|ENST00000320048|OR4X1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	576.3736572265625	2	576.339175	1150.6638	-1.1906	-0.00068618	1.3252	0.00076376	0.1346	7.7577E-05	576.3398461280398	53.056	1.0562	49.848	49.602	50.659	-3.208					31	20	2	0	0	0	0.027117	1	3304	3304		16.473	6.7675	1	61769			59701	7615	49224	49270	65502	65502					0.09449230348081983
VFYTVVTPLL	10	Unmodified	_VFYTVVTPLL_					0	0	0		ENSG00000176567|ENST00000320048|OR4X1	ENSG00000176567|ENST00000320048|OR4X1	ENSG00000176567|ENST00000320048|OR4X1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	576.339175	1150.6638	-1.8748	-0.0010805	1.6088	0.00092724	-0.26599	-0.0001533	576.33989891749	52.578	0.93654	49.765	49.493	50.43	-2.8129	-0.04187	0.0001533	NaN	16.473	34	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41566			59702	7615	49224	49270							0.09449230348081983
VFYVLVLL	8	Unmodified	_VFYVLVLL_					0	0	0			REV__ENSG00000152749|ENST00000376958|GPR180	REV__ENSG00000152749|ENST00000376958|GPR180	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.7584228515625	2	483.307147	964.599741	2.0293	0.00098079	-3.9184	-0.0018938	-1.889	-0.00091299	483.30512018771293	133.94	0.42944	133.94	133.77	134.2	0					15	8	2	0	0	0	0.028476	1	15606	15606		24.504	2.8017	1	79560	+		59703	20300	49225	49271	65503	65503					0.11602494981798372
VGAAGHNTN	9	Unmodified	_VGAAGHNTN_					0	0	0			REV__nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	REV__nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	MSMS	OvCa99_classI_Rep5	1	420.7021179199219	2	420.701566	839.388579	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.454	1	24.454	23.954	24.954	0								0	0	0	0.24998	1	452	452		18.324	0.95945	1		+		59704	23510	49226	49272	65504	65504					-0.03753989007373093
VGAAHRQEL	9	Unmodified	_VGAAHRQEL_					0	0	0		ENST00000568087.5_1_15:74212283-74220177:-|nuORF;ENST00000565756.5_1_15:74211671-74220273:-|nuORF	ENST00000568087.5_1_15:74212283-74220177:-|nuORF	ENST00000568087.5_1_15:74212283-74220177:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.7636413574219	2	490.76724	979.519927	-3.8369	-0.001883	1.1186	0.00054896	-2.7183	-0.0013341	490.76737842371836	153.9	0.52286	152.45	152.25	152.77	-1.4516					26	16	2	0	0	0	0.46377	1	15255	15255		45.952	10.334	1	19214			59705	13829	49227	49273	65505	65505					0.029348213605089768
VGAAPVSSVLP	11	Unmodified	_VGAAPVSSVLP_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000001528	REV__CON__ENSEMBL:ENSBTAP00000001528	MULTI-SECPEP	OvCa9_classI_Rep2	2	499.7854309082031	2	498.78985	995.565146	-1.6324	-0.00081421	1.6194	0.00080772	-0.013021	-6.495E-06	498.7904566530189	118.44	1.3921	118.3	117.54	118.93	-0.14755					48	27	3	0	0	0	0.02557	1	11317	11317		39.253	13.679	1	60091	+	+	59706	16169	49228	49274	65506	65506					0.06718627103043673
VGAEADRELE	10	Unmodified	_VGAEADRELE_					0	0	0		ENST00000524939.1_1_1:160252194-160254914:-|nuORF;ENSG00000162735|ENST00000368072|PEX19;nc|ENSG00000162735|P40855-6|PEX19	ENST00000524939.1_1_1:160252194-160254914:-|nuORF	ENST00000524939.1_1_1:160252194-160254914:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	544.7862548828125	2	544.76456	1087.51457	-0.07142	-3.8907E-05	2.172	0.0011832	2.1006	0.0011443	544.7654916501372	79.1	1.1464	76.761	76.466	77.612	-2.3399					43	22	3	0	0	0	0.026782	1	4239	4239		30.318	1.1682	1	67873			59707	6224	49229	49275	65507	65507					-0.025689470126280867
VGAFNPGMED	10	Unmodified	_VGAFNPGMED_					0	0	0		nc|ENSG00000184371|P09603-2|CSF1;ENSG00000184371|ENST00000329608|CSF1;CSF1|p.V497Lfs*50|1|0.22|ENSG00000184371|chr1:109924109-109924110|TG/-|frameshift_variant	nc|ENSG00000184371|P09603-2|CSF1	nc|ENSG00000184371|P09603-2|CSF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.3258056640625	2	518.723849	1035.43315	-1.0622	-0.00055101	0.21375	0.00011088	-0.84849	-0.00044013	518.7242168333984	71.238	0.67276	67.782	67.251	67.924	-3.4563					17	13	2	0	0	0	0.026665	1	5360	5360		51.335	5.3835	1	19697			59708	8153	49230	49276	65508	65508					-0.08315345976188837
VGAFWIMLTIN	11	Unmodified	_VGAFWIMLTIN_					0	0	0		tr|A0A553SM08|A0A553SM08_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_21670PE=4SV=1	tr|A0A553SM08|A0A553SM08_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_21670PE=4SV=1	tr|A0A553SM08|A0A553SM08_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_21670PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	632.775634765625	2	632.841559	1263.66857	-0.13027	-8.2443E-05	1.3518	0.00085548	1.2215	0.00077304	632.8428528354204	56.065	0.85843	52.771	52.567	53.425	-3.2944					36	16	3	0	0	0	0.025806	1	3634	3634		24.519	0	1	80964			59709	33781	49231	49277	65509	65509					0.04727791219193023
VGAGGSARPL	10	Unmodified	_VGAGGSARPL_					0	0	0		ENSG00000156860|ENST00000356166|FBRS	ENSG00000156860|ENST00000356166|FBRS	ENSG00000156860|ENST00000356166|FBRS	MULTI-SECPEP	OvCa99_classI_Rep5	1	442.92926025390625	2	442.751059	883.487565	0.31772	0.00014067	-0.57734	-0.00025562	-0.25963	-0.00011495	442.75111910157506	36.327	0.45847	36.327	36.029	36.487	0					34	9	5	0	0	0	0.026802	1	1902	1902		26.693	9.3279	1	560630			59710	5859	49232	49278	65510	65510					0.0411603395750717
VGAGHKLK	8	Unmodified	_VGAGHKLK_					0	0	0			REV__ENSG00000110799|ENST00000261405|VWF	REV__ENSG00000110799|ENST00000261405|VWF	MULTI-MSMS	OvCa99_classI_Rep5	1	405.2537841796875	2	405.253237	808.491922	2.2681	0.00091914	-0.24641	-9.9859E-05	2.0216	0.00081928	405.25313133238205	103.23	0.54003	103.23	103.01	103.55	0					21	12	2	0	0	0	0.72134	1	11540	11540		39.021	3.8208	1	635470	+		59711	18003	49233	49279	65511	65511					0.08001543171076264
VGAGIVAVKK	10	Unmodified	_VGAGIVAVKK_					0	0	0			REV__ENST00000209929.9_1_1:171154426-171178089:+|nuORF	REV__ENST00000209929.9_1_1:171154426-171178089:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.3105773925781	2	471.310752	940.606951	0.63501	0.00029929	-0.99591	-0.00046938	-0.36089	-0.00017009	471.31024904441927	22.362	2.2823	21.024	20.523	22.806	-1.3386					219	69	5	0	0	0	0.71192	1	373	373		29.15	4.9468	1	1692100	+		59712	17279	49234	49280	65512	65512					0.13427227582235446
VGAGLLGKKV	10	Unmodified	_VGAGLLGKKV_					0	0	0		tr|A0A7D6ZTU9|A0A7D6ZTU9_9CLOTTranscriptionelongationfactorGreAOS=ClostridiumintestinaleOX=36845GN=greAPE=3SV=1	tr|A0A7D6ZTU9|A0A7D6ZTU9_9CLOTTranscriptionelongationfactorGreAOS=ClostridiumintestinaleOX=36845GN=greAPE=3SV=1	tr|A0A7D6ZTU9|A0A7D6ZTU9_9CLOTTranscriptionelongationfactorGreAOS=ClostridiumintestinaleOX=36845GN=greAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.3109130859375	2	471.310752	940.606951	1.3289	0.00062632	-1.6854	-0.00079433	-0.35646	-0.000168	471.3099028886094	32.057	2.5601	29.362	28.732	31.293	-2.6954					224	67	4	0	0	0	0.69986	1	836	836		30.504	1.3541	1	1074400			59713	35758	49235	49281	65513	65513					0.13427227582246815
VGAGVGRQEP	10	Unmodified	_VGAGVGRQEP_					0	0	0		ENST00000383814.7_2_3:9957693-9957840:+|nuORF	ENST00000383814.7_2_3:9957693-9957840:+|nuORF	ENST00000383814.7_2_3:9957693-9957840:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	485.2593688964844	2	485.259248	968.503943	-0.48806	-0.00023684	0.31832	0.00015447	-0.16974	-8.237E-05	485.25934622911825	44.625	1.158	44.625	44.215	45.373	0					51	25	4	0	0	0	0.55359	1	3022	3022		47.657	1.6851	1	2059600			59714	11191	49236	49282	65514	65514					0.018431151236086407
VGAIVLHCI	9	Unmodified	_VGAIVLHCI_					0	0	0		tr|A0A7D6ZIL9|A0A7D6ZIL9_9CLOTArgininosuccinatelyaseOS=ClostridiumintestinaleOX=36845GN=argHPE=3SV=1	tr|A0A7D6ZIL9|A0A7D6ZIL9_9CLOTArgininosuccinatelyaseOS=ClostridiumintestinaleOX=36845GN=argHPE=3SV=1	tr|A0A7D6ZIL9|A0A7D6ZIL9_9CLOTArgininosuccinatelyaseOS=ClostridiumintestinaleOX=36845GN=argHPE=3SV=1	MSMS	OvCa9_classI_Rep4_	4	462.77325439453125	2	462.770406	923.526258	NaN	NaN	NaN	NaN	NaN	NaN	NaN	36.84	1	33.947	33.447	34.447	-2.8925								0	0	0	0.17688	1	1305	1305		39.021	7.0666	1				59715	35620	49237	49283	65515	65515					0.06143623267666953
VGAMGYVAG	9	Unmodified	_VGAMGYVAG_					0	0	0		tr|A0A553SRM9|A0A553SRM9_NIACIECFtransporterScomponentOS=NialliacirculansOX=1397GN=CEQ21_01360PE=4SV=1	tr|A0A553SRM9|A0A553SRM9_NIACIECFtransporterScomponentOS=NialliacirculansOX=1397GN=CEQ21_01360PE=4SV=1	tr|A0A553SRM9|A0A553SRM9_NIACIECFtransporterScomponentOS=NialliacirculansOX=1397GN=CEQ21_01360PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	412.7040100097656	2	412.702189	823.389824	0.74793	0.00030867	2.4921	0.0010285	3.24	0.0013372	412.70357783628623	32.14	6.2924	32.14	31.559	37.851	0					232	132	4	0	0	0	0.32242	1	1422	1422		60.404	4.8994	1	839830			59716	34277	49238	49284	65516	65516					-0.028934909628333116
VGAPAVAG	8	Unmodified	_VGAPAVAG_					0	0	0			REV__ENST00000357575.8_1_18:77663724-77663979:-|nuORF	REV__ENST00000357575.8_1_18:77663724-77663979:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	641.3405151367188	1	641.361702	640.354425	2.3708	0.0015205	0.060566	3.8844E-05	2.4314	0.0015594	641.3614900505565	78.359	1.5072	78.359	77.844	79.352	0					99	36	4	0	0	0	0.028476	1	7885	7885		16.705	6.5202	1	18960000	+		59717	24787	49239	49285	65517	65517					0.019862145716615487
VGARVVKF	8	Unmodified	_VGARVVKF_					0	0	0			REV__ENST00000465315.1_1_2:131099168-131099453:-|nuORF	REV__ENST00000465315.1_1_2:131099168-131099453:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	437.7527770996094	2	438.276712	874.538872	1.4618	0.00064069	-1.5545	-0.00068128	-0.092629	-4.0597E-05	438.27574976385324	45.762	0.35227	45.762	45.582	45.934	0					11	7	2	0	0	0	0.028476	1	3178	3178		44.531	27.166	1	47208	+		59718	19399	49240	49286	65518	65518					0.09658402722220671
VGASLCLTQLL	11	Unmodified	_VGASLCLTQLL_					0	0	0			REV__ENSG00000128731|ENST00000261609|HERC2	REV__ENSG00000128731|ENST00000261609|HERC2	MULTI-MSMS	OvCa9_classI_Rep2	2	559.3217163085938	2	559.317917	1116.62128	0.65117	0.00036421	2.7426	0.001534	3.3938	0.0018982	559.3212204417131	110.71	1.3328	110.57	110.24	111.57	-0.13961					58	26	3	0	0	0	0.68021	1	10441	10441		36.447	1.2947	1	288630	+		59719	18868	49241	49287	65519	65519					0.06763511948201995
VGASTPHFF	9	Unmodified	_VGASTPHFF_					0	0	0		ENST00000420022.3_1_19:50193401-50193710:+|nuORF	ENST00000420022.3_1_19:50193401-50193710:+|nuORF	ENST00000420022.3_1_19:50193401-50193710:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.2508239746094	2	481.74016	961.465767	-0.3807	-0.0001834	-3.1084	-0.0014974	-3.4891	-0.0016808	481.738497176005	48.203	0.29932	48.203	48.073	48.372	0					10	6	2	0	0	0	0.027456	1	3518	3518		35.201	0	1	126320			59720	11663	49242	49288	65520	65520					-0.01650770791047762
VGASVSRDD	9	Unmodified	_VGASVSRDD_					0	0	0			REV__tr|A0A7D6VS25|A0A7D6VS25_9CLOTProline--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=proSPE=3SV=1	REV__tr|A0A7D6VS25|A0A7D6VS25_9CLOTProline--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=proSPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	452.76800537109375	2	453.219788	904.425024	0.33774	0.00015307	3.9525	0.0017913	4.2902	0.0019444	453.22145439965703	32.675	0.48659	32.675	32.503	32.989	0					15	9	2	0	0	0	0.027462	1	1475	1475		29.15	3.6994	1	126160	+		59721	31462	49243	49289	65521	65521					-0.031011569013344342
VGATVNQGPL	10	Unmodified	_VGATVNQGPL_					0	0	0		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-MSMS	OvCa99_classI_Rep5	1	478.2635192871094	2	478.263999	954.513445	0.17284	8.2662E-05	-0.30706	-0.00014686	-0.13423	-6.4195E-05	478.26374550651815	32.19	0.4475	32.19	32.006	32.453	0					19	8	3	0	0	0	0.50999	1	1385	1385		52.937	1.4089	1	151690			59722	2585	49244	49290	65522	65522					0.03436883409131042
VGAVLKTDLD	10	Unmodified	_VGAVLKTDLD_					0	0	0		tr|A0A553SUS2|A0A553SUS2_NIACIRegulatoryproteinMsrROS=NialliacirculansOX=1397GN=CEQ21_06595PE=3SV=1	tr|A0A553SUS2|A0A553SUS2_NIACIRegulatoryproteinMsrROS=NialliacirculansOX=1397GN=CEQ21_06595PE=3SV=1	tr|A0A553SUS2|A0A553SUS2_NIACIRegulatoryproteinMsrROS=NialliacirculansOX=1397GN=CEQ21_06595PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.2669677734375	2	515.792589	1029.57063	2.3073	0.0011901	-0.47735	-0.00024621	1.83	0.00094389	515.7922952344753	107.55	0.54515	107.55	107.36	107.9	0					24	12	3	0	0	0	0.026659	1	12156	12156		37.812	11.119	1	719290			59723	34635	49245	49291	65523	65523					0.057023058948516336
VGCHHIWLA	9	Unmodified	_VGCHHIWLA_					0	0	0			REV__ENST00000380737.7_1_8:26228077-26228125:+|nuORF	REV__ENST00000380737.7_1_8:26228077-26228125:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.2841796875	2	518.263279	1034.51201	-0.69653	-0.00036099	0.32154	0.00016664	-0.37499	-0.00019435	518.2631977696267	58.854	0.27635	58.854	58.734	59.011	0					11	6	2	0	0	0	0.027462	1	5011	5011		29.842	12.477	1	510640	+		59724	25185	49246	49292	65524	65524					-0.0038702916058355186
VGCRQKLADSY	11	Unmodified	_VGCRQKLADSY_					0	0	0			REV__nc|ENSG00000225697|Q9BXS9-6|SLC26A6;REV__nc|ENSG00000225697|Q9BXS9-7|SLC26A6	REV__nc|ENSG00000225697|Q9BXS9-7|SLC26A6	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.2350158691406	3	413.876529	1238.60776	-0.45715	-0.0001892	1.1455	0.00047411	0.68839	0.00028491	413.8767141073318	43.801	0.60202	43.801	43.478	44.08	0					18	13	2	0	0	0	0.025612	1	2902	2902		43.651	0	1	112240	+		59725	29139;29140	49247	49293	65525	65525					-0.002003458310582573
VGCTSERLVQ	10	Unmodified	_VGCTSERLVQ_					0	0	0			REV__ENST00000527494.5_1_11:18014527-18021108:-|nuORF	REV__ENST00000527494.5_1_11:18014527-18021108:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	546.280029296875	2	546.279323	1090.54409	-0.58978	-0.00032218	4.3951	0.0024009	3.8053	0.0020788	546.2815975076795	64.153	1.9349	61.428	60.606	62.541	-2.7245					98	36	5	0	0	0	0.28845	1	4891	4891		82.241	13.454	1	342820	+		59726	27154	49248	49294	65526	65526					0.002442937318846816
VGDIIEVV	8	Unmodified	_VGDIIEVV_					0	0	0		SH3KBP1|p.P255Qfs*20|1|0.01|ENSG00000147010|chrX:19645438-19645438|G/-|frameshift_variant;SH3KBP1|p.D256Afs*27|1|0.03|ENSG00000147010|chrX:19645435-19645436|-/ATTCTCCCACATGCTTAGGCAAG|frameshift_variant;nc|ENSG00000147010|Q96B97-2|SH3KBP1;SH3KBP1|p.S575Gfs*71|1|0.08|ENSG00000147010|chrX:19542094-19542095|-/TTGATTCTCTCAAGAAACAGCTAACTGATCC|frameshift_variant;ENSG00000147010|ENST00000397821|SH3KBP1	SH3KBP1|p.P255Qfs*20|1|0.01|ENSG00000147010|chrX:19645438-19645438|G/-|frameshift_variant	SH3KBP1|p.P255Qfs*20|1|0.01|ENSG00000147010|chrX:19645438-19645438|G/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	422.24359130859375	2	422.244744	842.474934	0.32043	0.0001353	-2.8883	-0.0012196	-2.5679	-0.0010843	422.2432741367522	31.182	0.53014	31.182	30.979	31.509	0					26	10	3	0	0	0	0.73288	1	1265	1265		35.201	1.6851	1	254670			59727	5323	49249	49295	65527	65527					0.04739577774626014
VGDKFPIT	8	Unmodified	_VGDKFPIT_					0	0	0			REV__tr|A0A7D7A5G0|A0A7D7A5G0_9CLOTHomoserinekinaseOS=ClostridiumintestinaleOX=36845GN=thrBPE=3SV=1	REV__tr|A0A7D7A5G0|A0A7D7A5G0_9CLOTHomoserinekinaseOS=ClostridiumintestinaleOX=36845GN=thrBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	438.24755859375	2	438.744911	875.475269	1.069	0.000469	3.2842	0.0014409	4.3531	0.0019099	438.7463742186028	44.6	0.89581	41.89	41.402	42.298	-2.7097					25	17	2	0	0	0	0.028476	1	2514	2514		18.324	8.8539	1	30340	+		59728	32637	49250	49296	65528	65528					0.032549974944686255
VGDLGIARVL	10	Unmodified	_VGDLGIARVL_					0	0	0		nc|ENSG00000114904|P51957-2|NEK4;NEK4|p.L411Hfs*20|1|0.04|ENSG00000114904|chr3:52752068-52752069|-/ATGAGGCAGGGTCCAGT|frameshift_variant;nc|ENSG00000114904|P51957-3|NEK4;ENSG00000114904|ENST00000233027|NEK4	nc|ENSG00000114904|P51957-2|NEK4	nc|ENSG00000114904|P51957-2|NEK4	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.282958984375	2	506.811116	1011.60768	0.022734	1.1522E-05	-1.785	-0.00090465	-1.7622	-0.00089313	506.8108263815688	31.092	0.29475	28.382	28.199	28.494	-2.7097					7	5	2	0	0	0	0.026915	1	904	904		14.865	0	1	8669.1			59729	14972	49251	49297	65529	65529					0.10234022231270501
VGDPSVHLL	9	Unmodified	_VGDPSVHLL_					0	0	0		nc|ENSG00000099364|Q6PCT2-2|FBXL19;nc|ENSG00000099364|Q6PCT2-3|FBXL19;ENSG00000099364|ENST00000338343|FBXL19;nc|ENSG00000099364|Q6PCT2|FBXL19	nc|ENSG00000099364|Q6PCT2-2|FBXL19	nc|ENSG00000099364|Q6PCT2-2|FBXL19	MULTI-MSMS	OvCa99_classI_Rep5	1	468.76324462890625	2	468.761092	935.507631	2.8139	0.001319	-0.37029	-0.00017358	2.4436	0.0011455	468.76079396434204	89.32	0.89418	89.32	89.082	89.977	0					44	21	3	0	0	0	0.071436	1	9527	9527		106.42	37.628	1	2862600			59730	1971	49252	49298	65530	65530					0.03729784897484478
VGDTQVVVFKH	11	Unmodified	_VGDTQVVVFKH_					0	0	0		nc|ENSG00000156261|P50990-3|CCT8;nc|ENSG00000156261|P50990-2|CCT8;ENSG00000156261|ENST00000286788|CCT8;ENST00000475205.1_1_21:30434643-30435788:-|nuORF	nc|ENSG00000156261|P50990-3|CCT8	nc|ENSG00000156261|P50990-3|CCT8	MULTI-MSMS	OvCa9_classI_Rep2	2	410.2281494140625	3	410.227667	1227.66117	-0.59157	-0.00024268	1.2075	0.00049536	0.61596	0.00025268	410.22807386978417	38.111	1.8292	35.402	35.124	36.953	-2.7097					84	36	4	0	0	0	0.71831	1	1795	1795		23.378	0.81632	1	218460			59731	5830	49253	49299	65531	65531					0.05644774943152697
VGEDLDVLIKL	11	Unmodified	_VGEDLDVLIKL_					0	0	0		tr|A0A7D6ZV19|A0A7D6ZV19_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02080PE=4SV=1	tr|A0A7D6ZV19|A0A7D6ZV19_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02080PE=4SV=1	tr|A0A7D6ZV19|A0A7D6ZV19_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02080PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	405.2395324707031	3	405.239461	1212.69655	0.69282	0.00028076	-3.2163	-0.0013034	-2.5235	-0.0010226	405.23816410818705	45.869	1.9179	42.797	42.405	44.323	-3.0717					124	36	5	0	0	0	0.39136	1	2390	2390		61.765	0	1	2187400			59732	35788	49254	49300	65532	65532					0.09871392680292956
VGEFFGYQYPS	11	Unmodified	_VGEFFGYQYPS_					0	0	0			REV__tr|A0A7D6W3Q2|A0A7D6W3Q2_9CLOTAldo/ketoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11015PE=4SV=1	REV__tr|A0A7D6W3Q2|A0A7D6W3Q2_9CLOTAldo/ketoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11015PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	431.8641662597656	3	431.864394	1292.57135	0.044498	1.9217E-05	0.84271	0.00036394	0.88721	0.00038315	431.86461566952937	40.815	0.62038	40.815	40.619	41.24	0					28	13	3	0	0	0	0.70032	1	2509	2509		29.551	1.4693	1	538900	+		59733	31921	49255	49301	65533	65533					-0.06322899456085906
VGEGVVWSSP	10	Unmodified	_VGEGVVWSSP_					0	0	0			REV__ENST00000374023.7_2_6:34556733-34556940:-|nuORF	REV__ENST00000374023.7_2_6:34556733-34556940:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.7892761230469	2	508.756007	1015.49746	-0.71802	-0.0003653	-2.5375	-0.0012909	-3.2555	-0.0016562	508.75477529498966	46.568	1.503	43.495	42.666	44.169	-3.0724					38	28	2	0	0	0	0.02661	1	2509	2509		49.442	15.269	1	88566	+		59734	25056	49256	49302	65534	65534					-0.00966822827751912
VGEKMMGRLF	10	Oxidation (M)	_VGEKMM(Oxidation (M))GRLF_		VGEKM(0.111)M(0.889)GRLF		VGEKM(-9)M(9)GRLF	0	0	1		ENST00000453015.1_1_1:44169233-44170247:-|nuORF	ENST00000453015.1_1_1:44169233-44170247:-|nuORF	ENST00000453015.1_1_1:44169233-44170247:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	592.3020629882812	2	592.301744	1182.58893	-1.1031	-0.00065338	-0.56626	-0.0003354	-1.6694	-0.00098878	592.301413895625	81.905	2.5111	79.609	78.932	81.443	-2.2963					125	50	5	0	0	0	0.42082	1	4616	4616		65.465	10.689	2	2078200			59735	12061	49257	49303	65535	65535		331			0.004944012735677461
VGFAATGLFSF	11	Unmodified	_VGFAATGLFSF_					0	0	0		ENST00000355196.6_1_4:83821605-83821683:-|nuORF	ENST00000355196.6_1_4:83821605-83821683:-|nuORF	ENST00000355196.6_1_4:83821605-83821683:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	558.790771484375	2	558.78985	1115.56515	1.0194	0.00056962	-0.90589	-0.0005062	0.11349	6.342E-05	558.7890736933357	126.17	1.36	125.1	124.76	126.12	-1.0715					58	25	4	0	0	0	0.3578	2	9836	9836;9847		64.207	2.0999	1	130080			59736	10675	49258	49304	65536;65537	65536					0.011986271030536955
VGFAATGLFSF	11	Unmodified	_VGFAATGLFSF_					0	0	0		ENST00000355196.6_1_4:83821605-83821683:-|nuORF	ENST00000355196.6_1_4:83821605-83821683:-|nuORF	ENST00000355196.6_1_4:83821605-83821683:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.7893676757812	2	558.78985	1115.56515	-1.3026	-0.00072791	1.1336	0.00063343	-0.16908	-9.4481E-05	558.7902918355239	126.44	1.2335	125.02	124.78	126.01	-1.4143					61	24	4	0	0	0	0.48738	1	12031	12031		54.776	0	1	117080			59737	10675	49258	49304	65538	65538					0.011986271030536955
VGFFIRTLLL	10	Unmodified	_VGFFIRTLLL_					0	0	0		ENSG00000063127|ENST00000335875|SLC6A16;nc|ENSG00000063127|Q9GZN6-2|SLC6A16	ENSG00000063127|ENST00000335875|SLC6A16	ENSG00000063127|ENST00000335875|SLC6A16	MULTI-MSMS	OvCa99_classI_Rep5	1	589.8671264648438	2	589.868434	1177.72232	1.5659	0.00092365	-3.3087	-0.0019517	-1.7428	-0.001028	589.866386150264	112.27	0.55029	112.27	111.97	112.52	0					28	11	3	0	0	0	0.59703	1	12779	12779		42.396	0	1	452690			59738	1284	49259	49305	65539	65539					0.14056331713254622
VGFIALLF	8	Unmodified	_VGFIALLF_					0	0	0		ENSG00000166391|ENST00000198801|MOGAT2;nc|ENSG00000166391|Q3SYC2-3|MOGAT2	ENSG00000166391|ENST00000198801|MOGAT2	ENSG00000166391|ENST00000198801|MOGAT2	MULTI-MSMS	OvCa9_classI_Rep4_	4	440.2691345214844	2	440.270564	878.526576	-4.3853	-0.0019307	0.084088	3.7022E-05	-4.3012	-0.0018937	440.2705323197611	154.51	0.65776	153.06	152.77	153.43	-1.4516					21	14	2	0	0	0	0.73579	1	15296	15296		10.185	0	1	23892			59739	6672	49260	49306	65540	65540					0.08245366259188813
VGFMAATQ	8	Unmodified	_VGFMAATQ_					0	0	0			REV__nc|ENSG00000146216|Q5TCY1-2|TTBK1	REV__nc|ENSG00000146216|Q5TCY1-2|TTBK1	MULTI-MSMS	OvCa99_classI_Rep5	1	412.7038879394531	2	412.702189	823.389824	0.74793	0.00030867	2.4921	0.0010285	3.24	0.0013372	412.70357783628623	32.14	6.2924	32.14	31.559	37.851	0					232	132	4	0	0	0	0.50674	1	1372	1372		76.847	13.868	1	839830	+		59740	19999	49261	49307	65541	65541					-0.028934909628446803
VGGEALGRL	9	Unmodified	_VGGEALGRL_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__P02070;ENSG00000223609|ENST00000650601|HBD;CON__Q3SX09	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	OvCa99_classI_Rep5	1	436.25592041015625	2	436.253434	870.492316	2.5996	0.0011341	-0.48875	-0.00021322	2.1108	0.00092086	436.25312453260625	128.08	0.9825	128.08	127.81	128.79	0					32	20	2	0	0	0	0.16562	1	14870	14870		82.241	13.454	1	81406		+	59741	9402	49262	49308	65542	65542					0.051889181002820806
VGGLHCKP	8	Unmodified	_VGGLHCKP_					0	0	0		ENSG00000196620|ENST00000338206|UGT2B15;ENSG00000197888|ENST00000317746|UGT2B17;nc|ENSG00000156096|P06133-3|UGT2B4;nc|ENSG00000156096|P06133-2|UGT2B4;nc|ENSG00000109181|P36537-2|UGT2B10;nc|ENSG00000271271|P0DTE5-2|UGT2A2;ENSG00000135220|ENST00000251566|UGT2A3;ENSG00000156096|ENST00000305107|UGT2B4;ENSG00000109181|ENST00000265403|UGT2B10;ENSG00000271271|ENST00000604629|UGT2A2;ENSG00000171234|ENST00000305231|UGT2B7;nc|ENSG00000135226|Q9BY64-2|UGT2B28;ENSG00000135226|ENST00000335568|UGT2B28;ENSG00000173610|ENST00000286604|UGT2A1;nc|ENSG00000173610|P0DTE4-1|UGT2A1;nc|ENSG00000173610|P0DTE4-4|UGT2A1	ENSG00000196620|ENST00000338206|UGT2B15;ENSG00000171234|ENST00000305231|UGT2B7;nc|ENSG00000135226|Q9BY64-2|UGT2B28;ENSG00000173610|ENST00000286604|UGT2A1	ENSG00000196620|ENST00000338206|UGT2B15	MULTI-MSMS	OvCa9_classI_Rep2	2	405.7183532714844	2	405.718173	809.421793	-0.3042	-0.00012342	1.8181	0.00073763	1.5139	0.00061421	405.7187689414806	119.3	1.6269	119.13	118.76	120.38	-0.17137					76	32	4	0	0	0	0.72922	1	11457	11457		37.028	8.7742	1	350390			59742	8636;7188;4359;7395	49263	49309	65543	65543					0.00945921510970038
VGGLPSFF	8	Unmodified	_VGGLPSFF_					0	0	0		ENST00000470322.5_1_10:104242584-104242881:-|nuORF	ENST00000470322.5_1_10:104242584-104242881:-|nuORF	ENST00000470322.5_1_10:104242584-104242881:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	412.221435546875	2	412.221072	822.42759	1.9325	0.00079662	-1.5505	-0.00063915	0.382	0.00015747	412.2203090945695	127.92	0.98666	127.69	127.44	128.43	-0.22697					42	19	3	0	0	0	0.49583	1	12523	12523		77.944	20.491	1	133760			59743	12362	49264	49310	65544	65544					0.00927343294279126
VGGLPSFF	8	Unmodified	_VGGLPSFF_					0	0	0		ENST00000470322.5_1_10:104242584-104242881:-|nuORF	ENST00000470322.5_1_10:104242584-104242881:-|nuORF	ENST00000470322.5_1_10:104242584-104242881:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	412.2208557128906	2	412.221072	822.42759	1.6419	0.00067681	-1.2008	-0.000495	0.44107	0.00018182	412.2204880004127	129.13	1.1861	127.67	127.35	128.53	-1.4565					47	23	3	0	0	0	0.68312	1	12372	12372		46.766	5.5581	1	137310			59744	12362	49264	49310	65545	65545					0.00927343294279126
VGGLPSFF	8	Unmodified	_VGGLPSFF_					0	0	0		ENST00000470322.5_1_10:104242584-104242881:-|nuORF	ENST00000470322.5_1_10:104242584-104242881:-|nuORF	ENST00000470322.5_1_10:104242584-104242881:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	412.221072	822.42759	1.6229	0.00066899	-1.4799	-0.00061006	0.14296	5.8931E-05	412.22039528190413	128.73	0.74095	127.64	127.42	128.16	-1.0933	-0.028746	-9.1482E-05	NaN	77.944	22	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30934			59745	12362	49264	49310							0.00927343294279126
VGGMENMS	8	Unmodified	_VGGMENMS_					0	0	0		tr|A0A7D6ZWB1|A0A7D6ZWB1_9CLOTAcetyl-CoAacetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18295PE=3SV=1	tr|A0A7D6ZWB1|A0A7D6ZWB1_9CLOTAcetyl-CoAacetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18295PE=3SV=1	tr|A0A7D6ZWB1|A0A7D6ZWB1_9CLOTAcetyl-CoAacetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18295PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.9031066894531	2	412.667489	823.320424	0.70866	0.00029244	-0.64775	-0.00026731	0.060902	2.5132E-05	412.667178669082	68.684	0.41837	68.684	68.44	68.858	0					16	9	2	0	0	0	0.028476	1	6488	6488		13.775	5.544	1	207010			59746	35835	49265	49311	65546	65546					-0.09830317973899128
VGGNLGVTI	9	Unmodified	_VGGNLGVTI_					0	0	0			REV__tr|A0A553STH2|A0A553STH2_NIACI4-hydroxythreonine-4-phosphatedehydrogenasePdxAOS=NialliacirculansOX=1397GN=pdxAPE=3SV=1	REV__tr|A0A553STH2|A0A553STH2_NIACI4-hydroxythreonine-4-phosphatedehydrogenasePdxAOS=NialliacirculansOX=1397GN=pdxAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	416.2306213378906	2	415.242535	828.470518	0.62018	0.00025752	-2.0096	-0.00083445	-1.3894	-0.00057693	415.2430410206697	51.228	0.17084	51.228	51.078	51.248	0					5	3	2	0	0	0	0.027462	1	3924	3924		15.642	3.435	1	71260	+		59747	30962	49266	49312	65547	65547					0.049421133517171256
VGGPTVRKP	9	Unmodified	_VGGPTVRKP_					0	0	0			REV__ENST00000490470.5_1_3:133407133-133426371:+|nuORF	REV__ENST00000490470.5_1_3:133407133-133426371:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	456.7668151855469	2	455.777077	909.5396	-0.88174	-0.00040188	1.1067	0.00050439	0.22492	0.00010251	455.7773757228475	37.498	0.93415	34.788	34.436	35.37	-2.7097					33	18	2	0	0	0	0.027462	1	1701	1701		31.955	0	1	75091	+		59748	26654	49267	49313	65548	65548					0.08121197371269773
VGGRPHVC	8	Unmodified	_VGGRPHVC_					0	0	0			REV__nc|ENSG00000152242|Q96B23-2|ARK2N	REV__nc|ENSG00000152242|Q96B23-2|ARK2N	MULTI-MSMS	OvCa9_classI_Rep2	2	412.71307373046875	2	412.713422	823.412291	-0.80466	-0.00033209	0.3213	0.00013261	-0.48335	-0.00019949	412.7134511863073	119.3	1.2808	119.13	118.81	120.09	-0.17137					50	25	3	0	0	0	0.75915	1	11483	11483		20.482	2.1574	1	145920	+		59749	20278	49268	49314	65549	65549					-0.006478467745637317
VGGVTHLHH	9	Unmodified	_VGGVTHLHH_					0	0	0			REV__ENSG00000181826|ENST00000454158|RELL1	REV__ENSG00000181826|ENST00000454158|RELL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.74652099609375	2	478.756675	955.498798	1.1652	0.00055785	1.0998	0.00052656	2.265	0.0010844	478.7572568564432	36.91	0.34824	34.018	33.894	34.242	-2.8925					9	6	2	0	0	0	0.027462	1	1331	1331		25.45	0	1	8009.4	+		59750	22250	49269	49315	65550	65550					0.019268560516593425
VGIEVFTI	8	Unmodified	_VGIEVFTI_					0	0	0			REV__ENSG00000123609|ENST00000243346|NMI	REV__ENSG00000123609|ENST00000243346|NMI	MULTI-SECPEP	OvCa99_classI_Rep5	1	439.7470397949219	2	439.255111	876.49567	0.41847	0.00018381	-3.4499	-0.0015154	-3.0314	-0.0013316	439.25348546662326	59.313	1.0331	59.313	59.083	60.116	0					56	26	3	0	0	0	0.028476	1	5141	5141		26.796	6.3143	1	957870	+		59751	18650	49270	49316	65551	65551					0.052481681542985825
VGIHLTDIGII	11	Unmodified	_VGIHLTDIGII_					0	0	0		tr|A0A7D6VXH1|A0A7D6VXH1_9CLOTEpoxidehydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12855PE=3SV=1	tr|A0A7D6VXH1|A0A7D6VXH1_9CLOTEpoxidehydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12855PE=3SV=1	tr|A0A7D6VXH1|A0A7D6VXH1_9CLOTEpoxidehydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12855PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8422241210938	2	575.845156	1149.67576	-2.8608	-0.0016474	-0.58729	-0.00033819	-3.4481	-0.0019856	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.70865	1	14798	14798		26.693	3.6504	1	356230			59752	35280	49271	49317	65552	65552					0.10690847091291289
VGIPLRNTERS	11	Unmodified	_VGIPLRNTERS_					0	0	0		nc|ENSG00000095637|Q9BX66-11|SORBS1;ENSG00000095637|ENST00000371247|SORBS1;nc|ENSG00000095637|Q9BX66-2|SORBS1;nc|ENSG00000095637|Q9BX66-7|SORBS1;nc|ENSG00000095637|Q9BX66-4|SORBS1;nc|ENSG00000095637|Q9BX66-9|SORBS1;nc|ENSG00000095637|Q9BX66-8|SORBS1;nc|ENSG00000095637|Q9BX66-10|SORBS1;nc|ENSG00000095637|Q9BX66-6|SORBS1;SORBS1|p.L812Kfs*54|1|0.07|ENSG00000095637|chr10:95341675-95341676|-/AATTCTTTTTT|frameshift_variant;ENST00000474353.6_1_10:97106208-97250794:-|nuORF;nc|ENSG00000095637|Q9BX66-3|SORBS1;nc|ENSG00000095637|Q9BX66-5|SORBS1;nc|ENSG00000095637|Q9BX66-12|SORBS1	nc|ENSG00000095637|Q9BX66-11|SORBS1	nc|ENSG00000095637|Q9BX66-11|SORBS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.571044921875	3	414.570204	1240.68878	0.04639	1.9232E-05	0.34656	0.00014367	0.39295	0.0001629	414.5702589986125	20.778	1.7206	19.439	18.803	20.523	-1.3386					74	34	4	0	0	0	0.71498	1	115	115		21.78	0.94327	1	188380			59753	1936	49272	49318	65553	65553					0.07806678203382944
VGISRIEA	8	Unmodified	_VGISRIEA_					0	0	0		ENSG00000138399|ENST00000453153|FASTKD1;nc|ENSG00000138399|Q53R41-2|FASTKD1	ENSG00000138399|ENST00000453153|FASTKD1	ENSG00000138399|ENST00000453153|FASTKD1	MULTI-MSMS	OvCa99_classI_Rep5	1	422.7478942871094	2	422.747985	843.481417	-0.22673	-9.5849E-05	0.19733	8.3422E-05	-0.029396	-1.2427E-05	422.7479622334734	39.31	1.1361	39.31	39.017	40.154	0					43	25	5	0	0	0	0.62934	1	2297	2297		57.811	2.3071	1	1129300			59754	4684	49273	49319	65554	65554					0.053415157259905754
VGITGSTLVT	10	Unmodified	_VGITGSTLVT_					0	0	0			REV__tr|A0A553SNG0|A0A553SNG0_NIACIPhagetailsheathfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_24415PE=4SV=1	REV__tr|A0A553SNG0|A0A553SNG0_NIACIPhagetailsheathfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_24415PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.2761535644531	2	474.274032	946.533512	-0.31465	-0.00014923	2.2948	0.0010884	1.9801	0.00093913	474.27486541235845	53.715	1.7921	50.468	50.058	51.85	-3.2474					77	34	4	0	0	0	0.65434	1	3297	3297		35.618	1.4457	1	339520	+		59755	30420	49274	49320	65555	65555					0.05810634349109023
VGITTTSK	8	Unmodified	_VGITTTSK_					0	0	0		tr|A0A553SKY2|A0A553SKY2_NIACIAECfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_19575PE=4SV=1	tr|A0A553SKY2|A0A553SKY2_NIACIAECfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_19575PE=4SV=1	tr|A0A553SKY2|A0A553SKY2_NIACIAECfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_19575PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.21759033203125	2	403.734543	805.454533	1.3807	0.00055745	0.95	0.00038355	2.3307	0.000941	403.7346590794724	46.642	0.43802	46.642	46.456	46.894	0					11	9	2	0	0	0	0.028476	1	3311	3311		17.365	10.172	1	72117			59756	33665	49275	49321	65556	65556					0.044024071148214716
VGIVETKT	8	Unmodified	_VGIVETKT_					0	0	0			REV__tr|A0A553SRK4|A0A553SRK4_NIACICd(2+)-exportingATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	REV__tr|A0A553SRK4|A0A553SRK4_NIACICd(2+)-exportingATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	422.9197082519531	2	423.750193	845.485833	-0.24633	-0.00010438	0.17905	7.5872E-05	-0.067279	-2.851E-05	423.75029680437683	76.392	0.89868	73.453	73.222	74.121	-2.9389					27	18	3	0	0	0	0.028476	1	6095	6095		37.159	1.5408	1	43712	+		59757	30739	49276	49322	65557	65557					0.056909801489041456
VGKDEAIRR	9	Unmodified	_VGKDEAIRR_					0	0	0		ENST00000478856.5_1_3:100067842-100068019:+|nuORF	ENST00000478856.5_1_3:100067842-100068019:+|nuORF	ENST00000478856.5_1_3:100067842-100068019:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	522.303955078125	2	522.301447	1042.58834	-0.92916	-0.0004853	0.19892	0.0001039	-0.73024	-0.00038141	522.3016685667023	54.71	0.64493	54.71	54.505	55.15	0					24	14	3	0	0	0	0.34132	1	4424	4424		58.23	3.4536	1	2716700			59758	12498	49277	49323	65558	65558					0.06875065940357672
VGKFHPKKV	9	Unmodified	_VGKFHPKKV_					0	0	0			REV__ENSG00000165805|ENST00000298699|C12orf50	REV__ENSG00000165805|ENST00000298699|C12orf50	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3029174804688	2	520.324194	1038.63383	-2.1337	-0.0011102	-3.6805	-0.0019151	-5.8142	-0.0030253	520.3220998075252	49.991	0.57368	46.85	46.663	47.236	-3.1416					22	10	3	0	0	0	0.027462	1	2870	2870		31.955	3.7006	1	35573	+		59759	21121	49278	49324	65559	65559					0.11606336193403877
VGKFIAVLFV	10	Unmodified	_VGKFIAVLFV_					0	0	0			REV__nc|ENSG00000223648|A0A075B6Q5|IGHV3-64	REV__nc|ENSG00000223648|A0A075B6Q5|IGHV3-64	MULTI-MSMS	OvCa9_classI_Rep3	3	546.8400268554688	2	546.844428	1091.6743	-7.0438	-0.0038519	-0.3814	-0.00020857	-7.4252	-0.0040605	546.8440760274939	158.88	1.6198	157.61	157.26	158.88	-1.267					96	31	5	0	0	0	0.80532	1	13774	13774		18.324	2.6826	1	890150	+		59760	29136	49279	49325	65560	65560					0.13213257793177036
VGKHAVQT	8	Unmodified	_VGKHAVQT_					0	0	0		TENM3|p.D1682Efs*31|1|0.11|ENSG00000218336|chr4:182773624-182773625|-/AATGGGCCTGGGGTCAGCTGCACAAAAGTCCCAG|frameshift_variant;ENSG00000218336|ENST00000511685|TENM3;ENST00000502950.1_1_4:183601480-183676413:+|nuORF	TENM3|p.D1682Efs*31|1|0.11|ENSG00000218336|chr4:182773624-182773625|-/AATGGGCCTGGGGTCAGCTGCACAAAAGTCCCAG|frameshift_variant	TENM3|p.D1682Efs*31|1|0.11|ENSG00000218336|chr4:182773624-182773625|-/AATGGGCCTGGGGTCAGCTGCACAAAAGTCCCAG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.5599670410156	2	420.240327	838.466101	-0.068378	-2.8735E-05	-0.91571	-0.00038482	-0.98409	-0.00041355	420.23983872053356	42.643	0.73135	42.643	42.412	43.143	0					21	16	2	0	0	0	0.028476	1	2818	2818		17.365	9.1337	1	180570			59761	9218	49280	49326	65561	65561					0.040406489287988734
VGKIKAVIN	9	Unmodified	_VGKIKAVIN_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa9_classI_Rep2	2	471.3106384277344	2	471.310752	940.606951	-1.3467	-0.0006347	0.9748	0.00045943	-0.37187	-0.00017526	471.31115558776486	33.805	2.3785	31.096	30.823	33.201	-2.7097					116	47	5	0	0	0	0.59983	1	1338	1338		31.955	5.1588	1	1913400	+		59762	28942;32737	49281	49327	65562	65562					0.13427227582212709
VGKLLKGTSS	10	Unmodified	_VGKLLKGTSS_					0	0	0		ENST00000538434.5_1_19:39109908-39114769:+|nuORF	ENST00000538434.5_1_19:39109908-39114769:+|nuORF	ENST00000538434.5_1_19:39109908-39114769:+|nuORF	MSMS	OvCa99_classI_Rep5	1	495.30291748046875	2	495.303124	988.591695	NaN	NaN	NaN	NaN	NaN	NaN	NaN	21.364	1	21.364	20.864	21.864	0								0	0	0	0.14592	1	114	114		16.473	2.6978	1				59763	13421	49282	49328	65563	65563					0.09694315994374847
VGKLRQPP	8	Unmodified	_VGKLRQPP_					0	0	0		ENST00000307365.3_1_10:74034942-74035086:+|nuORF	ENST00000307365.3_1_10:74034942-74035086:+|nuORF	ENST00000307365.3_1_10:74034942-74035086:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	448.2915954589844	2	447.779619	893.544686	3.0676	0.0013736	-0.98776	-0.0004423	2.0799	0.00093132	447.77915974125096	84.598	0.49452	84.598	84.388	84.882	0					16	11	2	0	0	0	0.028476	1	8863	8863		50.025	14.824	1	443850			59764	10255	49283	49329	65564	65564					0.09365501233878604
VGKMFRRW	8	Unmodified	_VGKMFRRW_					0	0	0		tr|A0A553SIF0|A0A553SIF0_NIACINa+/H+antiporterOS=NialliacirculansOX=1397GN=CEQ21_14735PE=3SV=1	tr|A0A553SIF0|A0A553SIF0_NIACINa+/H+antiporterOS=NialliacirculansOX=1397GN=CEQ21_14735PE=3SV=1	tr|A0A553SIF0|A0A553SIF0_NIACINa+/H+antiporterOS=NialliacirculansOX=1397GN=CEQ21_14735PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	540.2984619140625	2	540.300196	1078.58584	-1.8908	-0.0010216	-2.2131	-0.0011957	-4.1039	-0.0022173	540.2989536670705	38.535	2.9688	35.825	35.469	38.438	-2.7097					158	59	5	0	0	0	0.69415	1	1792	1792		44.531	2.0566	1	1380400			59765	33375	49284	49330	65565	65565					0.04968939001742001
VGKRESTRRL	10	Unmodified	_VGKRESTRRL_					0	0	0		ENST00000556434.5_1_14:50394420-50412914:-|nuORF	ENST00000556434.5_1_14:50394420-50412914:-|nuORF	ENST00000556434.5_1_14:50394420-50412914:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.54913330078125	3	401.242311	1200.7051	1.4971	0.00060069	2.0025	0.0008035	3.4996	0.0014042	401.24305875258835	46.572	0.48307	46.572	46.326	46.809	0					14	10	2	0	0	0	0.026665	1	3317	3317		46.457	24.381	1	106750			59766	13659	49285	49331	65566	65566					0.11277804160135929
VGKRLDPIVVS	11	Unmodified	_VGKRLDPIVVS_					0	0	0			REV__ROBO1|p.C1437Sfs*15|1|0.21|ENSG00000169855|chr3:78614773-78614774|-/TG|frameshift_variant	REV__ROBO1|p.C1437Sfs*15|1|0.21|ENSG00000169855|chr3:78614773-78614774|-/TG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	591.8645629882812	2	591.86388	1181.71321	0.72408	0.00042856	0.6408	0.00037927	1.3649	0.00080783	591.8641978183085	65.182	2.2339	62.236	61.844	64.078	-2.9459					105	43	4	0	0	0	0.68021	1	2625	2625		36.447	0.12911	1	184170	+		59767	21489	49286	49332	65567	65567					0.12961938356897917
VGKVRKTNL	9	Unmodified	_VGKVRKTNL_					0	0	0			REV__tr|A0A7D6ZYR1|A0A7D6ZYR1_9CLOTIronABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03550PE=3SV=1	REV__tr|A0A7D6ZYR1|A0A7D6ZYR1_9CLOTIronABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03550PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	507.8249206542969	2	507.824558	1013.63456	-0.25901	-0.00013153	0.027469	1.395E-05	-0.23154	-0.00011758	507.8244393299816	29.857	0.29988	29.857	29.686	29.986	0					15	5	4	0	0	0	0.55011	1	1106	1106		37.812	2.1932	1	128040	+		59768	32385	49287	49333	65568	65568					0.1282913084245365
VGLAGPVMK	9	Unmodified	_VGLAGPVMK_					0	0	0			REV__ENSG00000105227|ENST00000324001|PRX	REV__ENSG00000105227|ENST00000324001|PRX	MULTI-SECPEP	OvCa9_classI_Rep2	2	436.21453857421875	2	436.257131	870.499709	-0.48402	-0.00021116	4.3504	0.0018979	3.8664	0.0016867	436.25863152739834	39.082	0.39609	36.372	36.261	36.657	-2.7097					9	7	2	0	0	0	0.027462	1	1872	1872		31.955	5.1588	1	8059.2	+		59769	17706	49288	49334	65569	65569					0.05927934376347821
VGLFVFIC	8	Unmodified	_VGLFVFIC_					0	0	0		ENSG00000253304|ENST00000521452|TMEM200B	ENSG00000253304|ENST00000521452|TMEM200B	ENSG00000253304|ENST00000521452|TMEM200B	MULTI-MSMS	OvCa99_classI_Rep5	1	449.24871826171875	2	449.248775	896.482997	0.35548	0.0001597	-0.84953	-0.00038165	-0.49405	-0.00022195	449.2482321096053	33.161	0.73904	33.161	32.989	33.728	0					32	14	3	0	0	0	0.69862	1	1502	1502		43.626	0	1	354270			59770	9428	49289	49335	65570	65570					0.030614334903930285
VGLGYDVHAL	10	Unmodified	_VGLGYDVHAL_					0	0	0		tr|A0A7D6VTV1|A0A7D6VTV1_9CLOT2-C-methyl-D-erythritol2,4-cyclodiphosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=ispFPE=3SV=1	tr|A0A7D6VTV1|A0A7D6VTV1_9CLOT2-C-methyl-D-erythritol2,4-cyclodiphosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=ispFPE=3SV=1	tr|A0A7D6VTV1|A0A7D6VTV1_9CLOT2-C-methyl-D-erythritol2,4-cyclodiphosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=ispFPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.2814331054688	2	522.279649	1042.54475	-0.15416	-8.0512E-05	-0.54853	-0.00028649	-0.70269	-0.000367	522.2792472116954	98.127	1.5847	95.749	95.47	97.054	-2.3786					53	30	2	0	0	0	0.56767	1	8705	8705		45.952	1.8352	1	488360			59771	35147	49290	49336	65571	65571					0.025174564432290936
VGLGYDVHAL	10	Unmodified	_VGLGYDVHAL_					0	0	0		tr|A0A7D6VTV1|A0A7D6VTV1_9CLOT2-C-methyl-D-erythritol2,4-cyclodiphosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=ispFPE=3SV=1	tr|A0A7D6VTV1|A0A7D6VTV1_9CLOT2-C-methyl-D-erythritol2,4-cyclodiphosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=ispFPE=3SV=1	tr|A0A7D6VTV1|A0A7D6VTV1_9CLOT2-C-methyl-D-erythritol2,4-cyclodiphosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=ispFPE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	522.279649	1042.54475	1.6034	0.00083742	0.75227	0.0003929	2.3557	0.0012303	522.2798884579397	95.444	1.2632	95.444	95.075	96.338	0	-0.26106	0.0011384	NaN	45.952	70	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4972800			59772	35147	49290	49336							0.025174564432290936
VGLGYDVHAL	10	Unmodified	_VGLGYDVHAL_					0	0	0		tr|A0A7D6VTV1|A0A7D6VTV1_9CLOT2-C-methyl-D-erythritol2,4-cyclodiphosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=ispFPE=3SV=1	tr|A0A7D6VTV1|A0A7D6VTV1_9CLOT2-C-methyl-D-erythritol2,4-cyclodiphosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=ispFPE=3SV=1	tr|A0A7D6VTV1|A0A7D6VTV1_9CLOT2-C-methyl-D-erythritol2,4-cyclodiphosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=ispFPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	522.279649	1042.54475	0.56113	0.00029307	-1.1567	-0.0006041	-0.59553	-0.00031103	522.2788616190721	96.743	1.6264	95.785	95.331	96.958	-0.95857	0.080278	-0.00085558	NaN	45.952	76	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	284170			59773	35147	49290	49336							0.025174564432290936
VGLGYDVHAL	10	Unmodified	_VGLGYDVHAL_					0	0	0		tr|A0A7D6VTV1|A0A7D6VTV1_9CLOT2-C-methyl-D-erythritol2,4-cyclodiphosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=ispFPE=3SV=1	tr|A0A7D6VTV1|A0A7D6VTV1_9CLOT2-C-methyl-D-erythritol2,4-cyclodiphosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=ispFPE=3SV=1	tr|A0A7D6VTV1|A0A7D6VTV1_9CLOT2-C-methyl-D-erythritol2,4-cyclodiphosphatesynthaseOS=ClostridiumintestinaleOX=36845GN=ispFPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	522.279649	1042.54475	-0.58381	-0.00030491	-0.077136	-4.0287E-05	-0.66094	-0.0003452	522.2794284578163	97.601	1.5736	95.841	95.517	97.091	-1.7595	0.13679	0.00027205	NaN	45.952	68	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	565170			59774	35147	49290	49336							0.025174564432290936
VGLLAAGAR	9	Unmodified	_VGLLAAGAR_					0	0	0			REV__ENST00000478184.1_1_1:172411833-172412978:-|nuORF	REV__ENST00000478184.1_1_1:172411833-172412978:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	413.8945617675781	2	414.25852	826.502486	-0.23812	-9.8642E-05	-0.68261	-0.00028278	-0.92072	-0.00038142	414.2580489392383	36.783	0.26696	36.783	36.618	36.885	0					9	5	2	0	0	0	0.027462	1	1950	1950		18.324	0	1	22961	+		59775	26406	49291	49337	65572	65572					0.08229525825515793
VGLLLSSK	8	Unmodified	_VGLLLSSK_					0	0	0			REV__Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|241|3|anti-sense	REV__Harlequin-int_dup238|chr6:111284651-111288187:-|5.62970209908365|0.2813414849289727|4.32|429.0|241|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.5677185058594	2	408.763104	815.511654	0.68245	0.00027896	0.049972	2.0427E-05	0.73242	0.00029939	408.76297443664015	54.682	0.51782	54.682	54.505	55.023	0					16	11	2	0	0	0	0.028476	1	4430	4430		23.042	0	1	204630	+		59776	28183	49292	49338	65573	65573					0.09651874391192905
VGLLMELRL	9	Unmodified	_VGLLMELRL_					0	0	0			REV__ENST00000593829.5_1_19:18417881-18418118:-|nuORF	REV__ENST00000593829.5_1_19:18417881-18418118:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.3153076171875	2	522.31772	1042.62089	-6.4384	-0.0033629	2.9681	0.0015503	-3.4703	-0.0018126	522.3190787634154	159.18	0.69006	157.6	157.38	158.07	-1.5858					28	16	2	0	0	0	0.65371	1	15701	15701		25.574	0.12388	1	32086	+		59777	27969	49293	49339	65574	65574					0.1012813701900086
VGLLRCPL	8	Acetyl (Protein N-term),Carbamidomethyl (C)	_(Acetyl (Protein N-term))VGLLRC(Carbamidomethyl (C))PL_	VGLLRC(1)PL		VGLLRC(52)PL		1	1	0		ENST00000590156.5_1_18:43671730-43674948:-|nuORF	ENST00000590156.5_1_18:43671730-43674948:-|nuORF	ENST00000590156.5_1_18:43671730-43674948:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.2825622558594	2	485.281137	968.547722	0.7704	0.00037386	3.1018	0.0015052	3.8722	0.0018791	485.28250543597454	33.895	1.5942	31.106	30.706	32.301	-2.7881					60	31	3	0	0	0	0.65582	1	968	968		52.299	13.493	1	135770			59778	14100	49294	49340	65575	65575	159				0.0621900829637525
VGLPSVLGPAL	11	Unmodified	_VGLPSVLGPAL_					0	0	0			REV__ENST00000488620.5_1_9:116353701-116353836:+|nuORF	REV__ENST00000488620.5_1_9:116353701-116353836:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	511.81414794921875	2	511.815867	1021.61718	-1.0737	-0.00054956	-1.8225	-0.00093277	-2.8962	-0.0014823	511.81478887315143	50.018	2.3782	47.224	46.637	49.015	-2.794					105	47	4	0	0	0	0.70518	1	3227	3227		27.882	2.4321	1	277830	+		59779	26623	49295	49341	65576	65576					0.10723790516806275
VGLRRLGL	8	Unmodified	_VGLRRLGL_					0	0	0		nc|ENSG00000148339|Q6KCM7-2|SLC25A25;ENSG00000148339|ENST00000373069|SLC25A25	nc|ENSG00000148339|Q6KCM7-2|SLC25A25	nc|ENSG00000148339|Q6KCM7-2|SLC25A25	MULTI-MSMS	OvCa9_classI_Rep3	3	442.2952575683594	2	442.295436	882.57632	1.1711	0.00051796	-1.1461	-0.00050691	0.024984	1.105E-05	442.29478158901236	67.455	1.5001	64.568	64.341	65.841	-2.8873					61	29	3	0	0	0	0.73288	2	2874	2868;2874		35.201	6.9464	1	227400			59780	5401	49296	49342	65577;65578	65578					0.13033493987848033
VGLTEEELSK	10	Unmodified	_VGLTEEELSK_					0	0	0		tr|A0A553SFS6|A0A553SFS6_NIACIATP-dependenthelicase/nucleasesubunitAOS=NialliacirculansOX=1397GN=addAPE=3SV=1	tr|A0A553SFS6|A0A553SFS6_NIACIATP-dependenthelicase/nucleasesubunitAOS=NialliacirculansOX=1397GN=addAPE=3SV=1	tr|A0A553SFS6|A0A553SFS6_NIACIATP-dependenthelicase/nucleasesubunitAOS=NialliacirculansOX=1397GN=addAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.2583618164062	2	552.792786	1103.57102	0.090991	5.0299E-05	1.7669	0.00097675	1.8579	0.001027	552.7938046310059	69.115	1.4932	66.495	65.622	67.115	-2.6203					58	21	3	0	0	0	0.026849	1	5376	5376		25.574	0	1	269550			59781	33069	49297	49343	65579	65579					0.02337680824052768
VGLTFAPLII	10	Unmodified	_VGLTFAPLII_					0	0	0			REV__tr|A0A553STW5|A0A553STW5_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05835PE=3SV=1	REV__tr|A0A553STW5|A0A553STW5_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05835PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	522.33154296875	2	522.328611	1042.64267	0.34893	0.00018226	1.2258	0.00064025	1.5747	0.0008225	522.3291530697765	158.45	0.64937	158.45	158.19	158.84	0					30	13	3	0	0	0	0.64063	1	18563	18563		37.159	0	1	120070	+		59782	31017	49298	49344	65580	65580					0.12305265039231017
VGLVGARAV	9	Unmodified	_VGLVGARAV_					0	0	0			REV__ENST00000529437.1_1_10:102286710-102289623:-|nuORF	REV__ENST00000529437.1_1_10:102286710-102289623:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	421.2664794921875	2	421.266345	840.518136	0.38381	0.00016169	-0.26705	-0.0001125	0.11676	4.9187E-05	421.2661241842314	40.583	1.4287	37.873	37.551	38.98	-2.7097					85	28	4	0	0	0	0.42057	1	2056	2056		50.025	3.2581	1	557040	+		59783	21160	49299	49345	65581	65581					0.09149812342559471
VGMLRAPRRTD	11	Unmodified	_VGMLRAPRRTD_					0	0	0		chr5:179833191-179833587|118|21.09|0.03|9.44|+|2|None,SQSTM1|1	chr5:179833191-179833587|118|21.09|0.03|9.44|+|2|None,SQSTM1|1	chr5:179833191-179833587|118|21.09|0.03|9.44|+|2|None,SQSTM1|1	MULTI-MSMS	OvCa99_classI_Rep5	1	424.5730285644531	3	424.571551	1270.69282	2.306	0.00097908	0.28262	0.00011999	2.5887	0.0010991	424.57165494115384	76.587	1.2207	76.587	76.28	77.501	0					91	29	5	0	0	0	0.68059	2	7704	7673;7704		36.318	6.1785	1	9216000			59784	500	49300	49346	65582;65583	65583					0.06830444425418136
VGNGEQAVQ	9	Unmodified	_VGNGEQAVQ_					0	0	0		tr|A0A7D7A203|A0A7D7A203_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17680PE=4SV=1	tr|A0A7D7A203|A0A7D7A203_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17680PE=4SV=1	tr|A0A7D7A203|A0A7D7A203_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17680PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.78497314453125	2	451.222331	900.430109	-0.35084	-0.00015831	0.89447	0.00040361	0.54363	0.0002453	451.22388515777476	42.192	0.55772	42.192	41.982	42.539	0					23	12	3	0	0	0	0.027462	1	2723	2723		55.504	31.301	1	131820			59785	36056	49301	49347	65584	65584					-0.024088530387189167
VGNLNLGVEGL	11	Unmodified	_VGNLNLGVEGL_					0	0	0		tr|A0A7D7A129|A0A7D7A129_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02090PE=4SV=1	tr|A0A7D7A129|A0A7D7A129_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02090PE=4SV=1	tr|A0A7D7A129|A0A7D7A129_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02090PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	542.3041381835938	2	542.803488	1083.59242	-0.64374	-0.00034943	-2.2717	-0.0012331	-2.9155	-0.0015825	542.8021562660439	37.843	0.81891	37.843	37.621	38.44	0					31	14	4	0	0	0	0.41398	1	2118	2118		60.118	3.3972	1	1285000			59786	36022	49302	49348	65585	65585					0.05397110643434644
VGNLSNFISF	10	Unmodified	_VGNLSNFISF_					0	0	0		ENST00000555952.5_1_14:52037087-52045744:+|nuORF	ENST00000555952.5_1_14:52037087-52045744:+|nuORF	ENST00000555952.5_1_14:52037087-52045744:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	548.33447265625	2	549.284931	1096.55531	-0.47795	-0.00026253	-3.5608	-0.0019559	-4.0387	-0.0022184	549.2827436905123	48.558	0.99477	45.798	45.528	46.523	-2.7603					40	19	3	0	0	0	0.026606	1	3087	3087		52.937	28.734	1	62668			59787	13653	49303	49349	65586	65586					0.010894390976545765
VGNQEKVL	8	Unmodified	_VGNQEKVL_					0	0	0			REV__ENSG00000142319|ENST00000270349|SLC6A3	REV__ENSG00000142319|ENST00000270349|SLC6A3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	443.2703857421875	2	443.753267	885.491981	-1.1202	-0.0004971	3.9373	0.0017472	2.8171	0.0012501	443.75469637949686	44.22	0.80104	41.212	40.744	41.545	-3.0074					20	15	2	0	0	0	0.028476	1	2195	2195		25.45	0	1	51498	+		59788	19781	49304	49350	65587	65587					0.04465498380432109
VGNRHGLLV	9	Unmodified	_VGNRHGLLV_					0	0	0		ENSG00000242372|ENST00000374450|EIF6	ENSG00000242372|ENST00000374450|EIF6	ENSG00000242372|ENST00000374450|EIF6	MULTI-MSMS	OvCa9_classI_Rep2	2	482.7872009277344	2	482.787976	963.561398	-0.60357	-0.0002914	0.26672	0.00012877	-0.33686	-0.00016263	482.7880567690855	58.692	2.2697	55.912	55.487	57.756	-2.7801					62	43	2	0	0	0	0.14739	8	4264	4236;4239;4245;4251;4257;4264;4271;4278		85.359	35.335	1	737640			59789	9365	49305	49351	65588;65589;65590;65591;65592;65593;65594;65595	65593					0.07816002119841414
VGNRHGLLV	9	Unmodified	_VGNRHGLLV_					0	0	0		ENSG00000242372|ENST00000374450|EIF6	ENSG00000242372|ENST00000374450|EIF6	ENSG00000242372|ENST00000374450|EIF6	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.7889709472656	2	482.787976	963.561398	0.070569	3.407E-05	-0.71091	-0.00034322	-0.64034	-0.00030915	482.787546504129	59.467	2.1768	56.075	55.705	57.882	-3.392					84	43	4	0	0	0	0.19716	2	3973	3964;3973		76.847	19.394	1	1125800			59790	9365	49305	49351	65596;65597	65597					0.07816002119841414
VGNTKVLEI	9	Unmodified	_VGNTKVLEI_					0	0	0		nc|ENSG00000101096|Q13469-5|NFATC2;nc|ENSG00000101096|Q13469-3|NFATC2;nc|ENSG00000101096|Q13469-4|NFATC2;ENSG00000101096|ENST00000371564|NFATC2;nc|ENSG00000101096|Q13469|NFATC2	nc|ENSG00000101096|Q13469-5|NFATC2	nc|ENSG00000101096|Q13469-5|NFATC2	MSMS	OvCa9_classI_Rep4_	4	486.7914123535156	2	486.78985	971.565146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	81.889	1	79.206	78.706	79.706	-2.6829								0	0	0	0.047399	1	6747	6747		78.264	6.9681	1				59791	2138	49306	49352	65598	65598					0.07822627103041668
VGPAHLPSLPP	11	Unmodified	_VGPAHLPSLPP_					0	0	0		nc|ENSG00000111642|Q14839-2|CHD4	nc|ENSG00000111642|Q14839-2|CHD4	nc|ENSG00000111642|Q14839-2|CHD4	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.818603515625	2	542.811116	1083.60768	-0.60187	-0.0003267	0.072303	3.9247E-05	-0.52957	-0.00028745	542.8109450478728	73.024	2.3043	70.624	69.959	72.263	-2.3999					81	43	3	0	0	0	0.025416	1	5855	5855		42.396	30.885	1	366740			59792	14960	49307	49353	65599	65599					0.06922022231287883
VGPALAAYRL	10	Unmodified	_VGPALAAYRL_					0	0	0		ENSG00000118523|ENST00000367976|CCN2	ENSG00000118523|ENST00000367976|CCN2	ENSG00000118523|ENST00000367976|CCN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.8047485351562	2	515.805834	1029.59712	-1.1855	-0.00061147	-2.9289	-0.0015107	-4.1143	-0.0021222	515.804239918851	55.171	1.7783	51.924	51.439	53.218	-3.2474					69	34	4	0	0	0	0.65434	1	3465	3465		35.618	10.168	1	658930			59793	3314	49308	49354	65600	65600					0.08350039576839663
VGPARKVR	8	Unmodified	_VGPARKVR_					0	0	0		ENST00000372336.3_1_10:81142122-81142245:-|nuORF	ENST00000372336.3_1_10:81142122-81142245:-|nuORF	ENST00000372336.3_1_10:81142122-81142245:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	441.78533935546875	2	441.785236	881.555919	-0.37742	-0.00016674	0.51159	0.00022601	0.13417	5.9274E-05	441.78528087802897	21.53	1.3162	20.191	19.864	21.18	-1.3386					43	25	3	0	0	0	0.74595	1	196	196		14.664	0.88877	1	101430			59794	10976	49309	49355	65601	65601					0.11040323328040813
VGPDICGF	8	Unmodified	_VGPDICGF_					0	0	0		nc|ENSG00000257335|O43451-1|MGAM;MGAM|p.P1829Sfs*7|1|0.02|ENSG00000257335|chr7:142103427-142103428|-/AG|frameshift_variant;ENSG00000257335|ENST00000475668|MGAM	nc|ENSG00000257335|O43451-1|MGAM	nc|ENSG00000257335|O43451-1|MGAM	MULTI-MSMS	OvCa9_classI_Rep4_	4	404.1860656738281	2	404.188914	806.363275	-4.7754	-0.0019302	-4.1855	-0.0016917	-8.961	-0.0036219	404.1871951904172	163.68	0.75046	162.04	161.73	162.48	-1.6336					39	20	2	0	0	0	0.74816	2	16174	16174;16185		23.037	7.4005	1	62332			59795	9471	49310	49356	65602;65603	65602					-0.047651798541551216
VGPETTKL	8	Unmodified	_VGPETTKL_					0	0	0			REV__ENSG00000148843|ENST00000369797|PDCD11	REV__ENSG00000148843|ENST00000369797|PDCD11	MULTI-SECPEP	OvCa9_classI_Rep2	2	422.9192199707031	2	422.742368	843.470183	-0.41898	-0.00017712	0.87836	0.00037132	0.45938	0.0001942	422.7426662631286	74.945	0.88283	72.974	72.534	73.417	-1.9711					22	16	2	0	0	0	0.028476	1	6126	6126		33.516	5.2613	1	22846	+		59796	20133	49311	49357	65604	65604					0.04218693631844417
VGPETTKL	8	Unmodified	_VGPETTKL_					0	0	0			REV__ENSG00000148843|ENST00000369797|PDCD11	REV__ENSG00000148843|ENST00000369797|PDCD11	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	422.742368	843.470183	-0.14564	-6.1566E-05	-0.048007	-2.0295E-05	-0.19364	-8.1861E-05	422.74229766614195	75.852	0.72003	72.913	72.692	73.412	-2.9389	-0.030441	-0.00027611	NaN	33.516	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112620	+		59797	20133	49311	49357							0.04218693631844417
VGPGAKGRK	9	Unmodified	_VGPGAKGRK_					0	0	0			REV__ENST00000556440.6_2_17:62502712-62502835:+|nuORF	REV__ENST00000556440.6_2_17:62502712-62502835:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	435.2691955566406	2	435.269419	868.524284	0.29131	0.0001268	-0.70002	-0.0003047	-0.40872	-0.0001779	435.26897806617785	40.282	1.3859	37.572	37.052	38.438	-2.7097					82	27	6	0	0	0	0.6653	1	2026	2026		24.203	1.1603	1	329020	+		59798	27560	49312	49358	65605	65605					0.08476330574092117
VGPIVPQGT	9	Unmodified	_VGPIVPQGT_					0	0	0		tr|A0A553SS75|A0A553SS75_NIACIProtein-ADP-ribosehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_02545PE=4SV=1	tr|A0A553SS75|A0A553SS75_NIACIProtein-ADP-ribosehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_02545PE=4SV=1	tr|A0A553SS75|A0A553SS75_NIACIProtein-ADP-ribosehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_02545PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	434.2527160644531	2	434.25036	866.486168	0.94438	0.0004101	0.49402	0.00021453	1.4384	0.00062462	434.25044558710437	63.312	1.6957	63.312	62.976	64.672	0					78	41	3	0	0	0	0.46377	2	5682	5682;5710		45.952	5.1738	1	3733100			59799	34340	49313	49359	65606;65607	65606					0.04758399868762808
VGPLGHLNHV	10	Unmodified	_VGPLGHLNHV_					0	0	0			REV__ENSG00000112077|ENST00000371175|RHAG	REV__ENSG00000112077|ENST00000371175|RHAG	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.79541015625	2	521.793258	1041.57196	-0.36391	-0.00018989	4.1871	0.0021848	3.8232	0.0019949	521.7948031991656	78.268	1.4789	75.451	75.018	76.497	-2.8165					79	30	4	0	0	0	0.49049	1	6311	6311		55.504	0.72789	1	539800	+		59800	18074	49314	49360	65608	65608					0.05283984774268902
VGPLRPRG	8	Unmodified	_VGPLRPRG_					0	0	0			REV__ENST00000548278.1_2_12:113623609-113623997:+|nuORF	REV__ENST00000548278.1_2_12:113623609-113623997:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	426.2644958496094	2	426.264136	850.51372	-0.55634	-0.00023715	0.54267	0.00023132	-0.013668	-5.826E-06	426.2642911999857	40.717	1.6154	37.763	37.527	39.142	-2.9541					48	30	2	0	0	0	0.74361	1	1775	1775		29.842	1.5873	1	276410	+		59801	27441	49315	49361	65609	65609					0.08248347919663956
VGPLRPRG	8	Unmodified	_VGPLRPRG_					0	0	0			REV__ENST00000548278.1_2_12:113623609-113623997:+|nuORF	REV__ENST00000548278.1_2_12:113623609-113623997:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	426.264136	850.51372	0.15683	6.6853E-05	-0.067615	-2.8822E-05	0.089219	3.8031E-05	426.2640094786581	40.786	1.2802	38.076	37.7	38.98	-2.7097	0.15677	-0.00030151	NaN	29.842	47	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68248	+		59802	27441	49315	49361							0.08248347919663956
VGPLRPRG	8	Unmodified	_VGPLRPRG_					0	0	0			REV__ENST00000548278.1_2_12:113623609-113623997:+|nuORF	REV__ENST00000548278.1_2_12:113623609-113623997:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	426.264136	850.51372	-0.55634	-0.00023715	0.54267	0.00023132	-0.013668	-5.826E-06	426.2642911999857	40.717	1.6154	37.763	37.527	39.142	-2.9541	-0.15677	0.00021877	NaN	29.842	48	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	276410	+		59803	27441	49315	49361							0.08248347919663956
VGPLVRGDG	9	Unmodified	_VGPLVRGDG_					0	0	0			REV__ENST00000318130.12_1_1:184723646-184723757:-|nuORF	REV__ENST00000318130.12_1_1:184723646-184723757:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	435.2454833984375	2	435.245609	868.476666	0.63418	0.00027602	-0.35472	-0.00015439	0.27946	0.00012163	435.24533408325397	44.124	1.2939	41.415	41.104	42.398	-2.7097					53	25	3	0	0	0	0.27546	1	2496	2496		65.803	12.452	1	259220	+		59804	24422	49316	49362	65610	65610					0.03716631583245089
VGPNLPIF	8	Unmodified	_VGPNLPIF_					0	0	0			REV__HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|182|2|anti-sense	REV__HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|182|2|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	428.7513122558594	2	428.749996	855.485439	0.94948	0.00040709	1.7737	0.00076046	2.7231	0.0011675	428.75051460289086	158.83	0.53041	158.83	158.61	159.14	0					20	10	3	0	0	0	0.72134	1	18610	18610		39.021	0.21535	1	88503	+		59805	28228	49317	49363	65611	65611					0.05191605219704343
VGPPEPLL	8	Unmodified	_VGPPEPLL_					0	0	0			REV__ENST00000559009.1_1_15:102312406-102316387:-|nuORF	REV__ENST00000559009.1_1_15:102312406-102316387:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	411.2406311035156	2	411.242004	820.469455	0.092715	3.8128E-05	-2.8625	-0.0011772	-2.7698	-0.0011391	411.24067930398303	27.965	0.5994	27.965	27.741	28.34	0					23	11	3	0	0	0	0.68312	1	874	874		46.766	9.6073	1	316040	+		59806	27591	49318	49364	65612	65612					0.052038989828247395
VGPQLSPQ	8	Unmodified	_VGPQLSPQ_					0	0	0		nc|ENSG00000100354|Q9UPQ9-1|TNRC6B;TNRC6B|p.Q1753Rfs*11|1|0.24|ENSG00000100354|chr22:40322995-40322995|C/-|frameshift_variant;ENSG00000100354|ENST00000454349|TNRC6B;nc|ENSG00000100354|Q9UPQ9-2|TNRC6B	nc|ENSG00000100354|Q9UPQ9-1|TNRC6B	nc|ENSG00000100354|Q9UPQ9-1|TNRC6B	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.7481994628906	2	413.226885	824.439217	0.93539	0.00038653	-1.9126	-0.00079033	-0.9772	-0.00040381	413.22574133145037	31.62	0.39721	31.62	31.46	31.857	0					12	7	2	0	0	0	0.028476	1	1313	1313		53.351	17.733	1	17402			59807	2055	49319	49365	65613	65613					0.019975403176204054
VGPSLGFF	8	Unmodified	_VGPSLGFF_					0	0	0			REV__ENST00000313064.2_1_2:232378846-232379035:-|nuORF	REV__ENST00000313064.2_1_2:232378846-232379035:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	412.220458984375	2	412.221072	822.42759	1.6419	0.00067681	-1.2008	-0.000495	0.44107	0.00018182	412.2204880004127	129.13	1.1861	127.67	127.35	128.53	-1.4565					47	23	3	0	0	0	0.72922	1	12347	12347		37.028	0	1	137310	+		59808	24363	49320	49366	65614	65614					0.00927343294279126
VGPSPAGRART	11	Unmodified	_VGPSPAGRART_					0	0	0			REV__nc|ENSG00000130669|O96013-3|PAK4	REV__nc|ENSG00000130669|O96013-3|PAK4	MULTI-MSMS	OvCa9_classI_Rep3	3	534.80029296875	2	534.799072	1067.58359	1.4912	0.00079751	2.2537	0.0012053	3.7449	0.0020028	534.800052583582	68.925	1.398	66.111	65.813	67.211	-2.8144					53	27	3	0	0	0	0.26821	2	3061	3047;3061		70.816	12.586	1	614880	+		59809	18958	49321	49367	65615;65616	65616					0.05250181797600817
VGPTGRGSSL	10	Unmodified	_VGPTGRGSSL_					0	0	0			REV__ENST00000570123.5_1_16:85833238-85834834:+|nuORF	REV__ENST00000570123.5_1_16:85833238-85834834:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	465.75360107421875	2	465.753798	929.493044	-0.66211	-0.00030838	0.59578	0.00027749	-0.066328	-3.0893E-05	465.7539083170596	59.929	2.3565	57.159	56.567	58.924	-2.7702					98	44	5	0	0	0	0.1722	1	4396	4396		98.629	5.4861	1	1317300	+		59810	27735	49322	49368	65617	65617					0.025477127493331864
VGQLWPRG	8	Unmodified	_VGQLWPRG_					0	0	0		ENST00000559126.5_1_15:85197121-85197442:-|nuORF	ENST00000559126.5_1_15:85197121-85197442:-|nuORF	ENST00000559126.5_1_15:85197121-85197442:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.2802734375	2	456.756144	911.497735	-0.43657	-0.00019941	0.10393	4.7471E-05	-0.33264	-0.00015193	456.75614973242205	36.145	0.41195	36.145	35.892	36.304	0					20	8	4	0	0	0	0.028476	1	1859	1859		44.531	9.3304	1	121540			59811	13713	49323	49369	65618	65618					0.03844641682758265
VGQRVLAV	8	Unmodified	_VGQRVLAV_					0	0	0		ENST00000264805.9_1_4:120548597-120548699:-|nuORF	ENST00000264805.9_1_4:120548597-120548699:-|nuORF	ENST00000264805.9_1_4:120548597-120548699:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	421.26690673828125	2	421.266345	840.518136	-1.2006	-0.00050579	0.72037	0.00030347	-0.48026	-0.00020232	421.26666345540275	40.83	2.0659	37.876	37.421	39.487	-2.9541					132	39	5	0	0	0	0.66704	1	1773	1773		50.025	0	1	2205900			59812	9938	49324	49370	65619	65619					0.09149812342559471
VGRGRLPK	8	Unmodified	_VGRGRLPK_					0	0	0			REV__ENSG00000116544|ENST00000373347|DLGAP3	REV__ENSG00000116544|ENST00000373347|DLGAP3	MULTI-MSMS	OvCa99_classI_Rep5	1	441.78680419921875	2	441.785236	881.555919	1.3466	0.00059492	-1.2588	-0.00055613	0.0878	3.8789E-05	441.7845069281058	57.702	1.0084	57.702	57.522	58.53	0					47	23	3	0	0	0	0.71369	1	4868	4868		40.573	0	1	1275900	+		59813	18306	49325	49371	65620	65620					0.11040323328029444
VGRIGSLGHL	10	Unmodified	_VGRIGSLGHL_					0	0	0			REV__ENST00000293894.3_1_16:1035736-1036009:+|nuORF	REV__ENST00000293894.3_1_16:1035736-1036009:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	504.80072021484375	2	504.801083	1007.58761	-1.3473	-0.00068012	1.0581	0.00053415	-0.28917	-0.00014597	504.80145583104496	39.099	1.0401	36.39	36.112	37.152	-2.7097					52	20	4	0	0	0	0.69986	1	1903	1903		30.504	1.3541	1	219820	+		59814	24176	49326	49372	65621	65621					0.0841227129130857
VGRKLMTFIE	10	Unmodified	_VGRKLMTFIE_					0	0	0		tr|A0A7D7A606|A0A7D7A606_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08265PE=4SV=1	tr|A0A7D7A606|A0A7D7A606_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08265PE=4SV=1	tr|A0A7D7A606|A0A7D7A606_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08265PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.3414306640625	2	597.339184	1192.66381	1.4504	0.00086641	-1.3095	-0.00078223	0.14091	8.4174E-05	597.3381612394743	97.246	1.961	94.852	93.944	95.905	-2.3943					108	38	4	0	0	0	0.28845	1	8622	8622		82.241	5.4664	1	322410			59815	36181	49327	49373	65622	65622					0.07518907076450887
VGRKRGRL	8	Unmodified	_VGRKRGRL_					0	0	0		ENST00000394198.6_1_3:97686370-97686451:-|nuORF	ENST00000394198.6_1_3:97686370-97686451:-|nuORF	ENST00000394198.6_1_3:97686370-97686451:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	471.3092041015625	2	471.30941	940.604266	-0.32195	-0.00015174	-0.54095	-0.00025496	-0.8629	-0.00040669	471.30924086054455	24.361	1.905	24.361	24.137	26.042	0					86	37	5	0	0	0	0.56113	1	454	454		71.378	0	1	6134900			59816	11260	49328	49374	65623	65623					0.13158816967927578
VGRKSARYTE	10	Unmodified	_VGRKSARYTE_					0	0	0		ENST00000466084.1_1_3:44959495-44960555:-|nuORF	ENST00000466084.1_1_3:44959495-44960555:-|nuORF	ENST00000466084.1_1_3:44959495-44960555:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8170166015625	2	583.817461	1165.62037	-2.0009	-0.0011681	-1.5597	-0.00091061	-3.5606	-0.0020787	583.816415272618	81.845	2.948	79.543	78.666	81.614	-2.3016					145	59	4	0	0	0	0.37436	1	4578	4578		71.877	6.4121	1	2106500			59817	12282	49329	49375	65624	65624					0.04418433623527562
VGRKVVFA	8	Unmodified	_VGRKVVFA_					0	0	0			REV__nc|ENSG00000128159|Q96RT7-2|TUBGCP6;REV__ENST00000498611.5_1_22:50657979-50682900:-|nuORF	REV__nc|ENSG00000128159|Q96RT7-2|TUBGCP6	MULTI-MSMS	OvCa99_classI_Rep5	1	438.2782287597656	2	438.276712	874.538872	1.1374	0.00049851	-1.1676	-0.00051175	-0.030205	-1.3238E-05	438.27613755563544	62.748	1.5164	62.748	62.418	63.935	0					97	37	5	0	0	0	0.7043	1	5608	5608		42.474	0	1	20685000	+		59818	18841;26798	49330	49376	65625	65625					0.09658402722220671
VGRLPALR	8	Unmodified	_VGRLPALR_					0	0	0			REV__ENST00000361951.4_1_1:173794025-173794118:+|nuORF	REV__ENST00000361951.4_1_1:173794025-173794118:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	441.2875061035156	2	441.287611	880.56067	0.25147	0.00011097	-0.13098	-5.7799E-05	0.1205	5.3173E-05	441.28737558775805	37.046	0.55114	37.046	36.84	37.391	0					32	11	4	0	0	0	0.61758	1	2000	2000		60.294	2.4827	1	731500	+		59819	24870	49331	49377	65626	65626					0.11561207470776935
VGRPPTATA	9	Unmodified	_VGRPPTATA_					0	0	0			REV__ENST00000471119.5_1_1:33546965-33585780:+|nuORF	REV__ENST00000471119.5_1_1:33546965-33585780:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	435.2467956542969	2	435.245609	868.476666	-0.58655	-0.00025529	0.9078	0.00039512	0.32125	0.00013982	435.2459349866964	44.17	1.4738	41.163	40.891	42.365	-3.0074					76	28	4	0	0	0	0.19758	1	2187	2187		76.774	4.8967	1	1830900	+		59820	26271	49332	49378	65627	65627					0.037166315832337204
VGRRKKVPQ	9	Unmodified	_VGRRKKVPQ_					0	0	0		ENST00000589716.5_1_17:40911856-40912972:-|nuORF	ENST00000589716.5_1_17:40911856-40912972:-|nuORF	ENST00000589716.5_1_17:40911856-40912972:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	534.343505859375	2	534.343449	1066.67235	1.9733	0.0010544	-1.9799	-0.0010579	-0.0065619	-3.5063E-06	534.3423036869325	64.763	1.4145	61.77	61.395	62.809	-2.9933					70	27	3	0	0	0	0.61208	1	2521	2521		30.504	2.6214	1	193540			59821	14092	49333	49379	65628	65628					0.1416764182793031
VGRRKRFH	8	Unmodified	_VGRRKRFH_					0	0	0			REV__ENST00000368218.8_2_1:156698377-156698662:+|nuORF	REV__ENST00000368218.8_2_1:156698377-156698662:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	528.31884765625	2	528.320309	1054.62606	-1.2877	-0.00068031	-0.20218	-0.00010681	-1.4899	-0.00078712	528.3201028484496	56.253	2.2315	53.449	52.879	55.11	-2.804					126	44	4	0	0	0	0.69415	1	3953	3953		44.531	3.9584	1	541320	+		59822	24916	49334	49380	65629	65629					0.10093621716487178
VGRRKRFH	8	Unmodified	_VGRRKRFH_					0	0	0			REV__ENST00000368218.8_2_1:156698377-156698662:+|nuORF	REV__ENST00000368218.8_2_1:156698377-156698662:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.3207397460938	2	528.320309	1054.62606	-0.59889	-0.00031641	-1.0274	-0.00054277	-1.6263	-0.00085918	528.3196947884122	56.923	1.3748	53.578	53.222	54.596	-3.3449					88	26	4	0	0	0	0.73626	1	3663	3663		33.516	0	1	903090	+		59823	24916	49334	49380	65630	65630					0.10093621716487178
VGRSLESIM	9	Unmodified	_VGRSLESIM_					0	0	0			REV__tr|A0A553SFI6|A0A553SFI6_NIACIEnoyl-[acyl-carrier-protein]reductase[NADH]OS=NialliacirculansOX=1397GN=fabIPE=3SV=1	REV__tr|A0A553SFI6|A0A553SFI6_NIACIEnoyl-[acyl-carrier-protein]reductase[NADH]OS=NialliacirculansOX=1397GN=fabIPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	496.2663879394531	2	496.265684	990.516816	1.8637	0.0009249	-2.3177	-0.0011502	-0.454	-0.0002253	496.2643848501877	59.438	2.028	56.339	55.347	57.375	-3.0993					83	55	2	0	0	0	0.67509	1	1870	1870		23.042	1.0826	1	32593	+		59824	29583	49335	49381	65631	65631					0.02117810191487024
VGRTPQAAI	9	Unmodified	_VGRTPQAAI_					0	0	0			REV__ENST00000556412.4_1_14:77917607-77919698:-|nuORF	REV__ENST00000556412.4_1_14:77917607-77919698:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	456.7668151855469	2	456.766709	911.518865	-1.0943	-0.00049982	1.1247	0.00051372	0.03042	1.3895E-05	456.76710390256716	37.466	1.7255	34.756	34.386	36.112	-2.7097					82	34	4	0	0	0	0.27001	1	1701	1701		66.429	13.078	1	799280	+		59825	27558	49336	49382	65632	65632					0.05956606991605895
VGRTRLTP	8	Unmodified	_VGRTRLTP_					0	0	0			REV__ENST00000522079.5_1_8:136569738-136660819:+|nuORF	REV__ENST00000522079.5_1_8:136569738-136660819:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.2741394042969	2	450.274701	898.534849	-1.3926	-0.00062703	1.3713	0.00061744	-0.0213	-9.5907E-06	450.2752805302911	148.27	1.3965	146.84	146.48	147.87	-1.435					87	28	5	0	0	0	0.75426	1	14693	14693		18.324	0	1	541000	+		59826	19032	49337	49383	65633	65633					0.08152313228504227
VGRVRASVLKI	11	Unmodified	_VGRVRASVLKI_					0	0	0		ENST00000535011.6_1_7:128409887-128409977:+|nuORF	ENST00000535011.6_1_7:128409887-128409977:+|nuORF	ENST00000535011.6_1_7:128409887-128409977:+|nuORF	MSMS	OvCa99_classI_Rep5	1	599.394287109375	2	599.393139	1196.77173	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.87	1	20.87	20.37	21.37	0								0	0	0	0.19474	1	64	64		18.262	2.6203	1				59827	13368	49338	49384	65634	65634					0.18121039722018395
VGSAITTTNI	10	Unmodified	_VGSAITTTNI_					0	0	0			REV__tr|A0A7D6VZ48|A0A7D6VZ48_9CLOTGlucosaminidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18685PE=4SV=1	REV__tr|A0A7D6VZ48|A0A7D6VZ48_9CLOTGlucosaminidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18685PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	488.7693786621094	2	488.769114	975.523675	-0.8737	-0.00042704	0.82988	0.00040562	-0.04382	-2.1418E-05	488.7696377476148	28.563	0.298	28.563	28.34	28.638	0					15	5	4	0	0	0	0.50999	1	948	948		52.937	16.49	1	85057	+		59828	31831	49339	49385	65635	65635					0.03493446343702544
VGSARVRRR	9	Unmodified	_VGSARVRRR_					0	0	0		ENST00000413384.6_1_7:150756719-150759034:+|nuORF	ENST00000413384.6_1_7:150756719-150759034:+|nuORF	ENST00000413384.6_1_7:150756719-150759034:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.8109741210938	2	528.828498	1055.64244	-1.4747	-0.00077985	2.5539	0.0013506	1.0793	0.00057074	528.829954986563	43.857	0.34372	43.857	43.694	44.038	0					10	7	2	0	0	0	0.027462	1	2929	2929		17.365	9.1337	1	58373			59829	11562	49340	49386	65636	65636					0.11684702882598685
VGSDIVKK	8	Unmodified	_VGSDIVKK_					0	0	0			REV__tr|A0A553SS11|A0A553SS11_NIACIOxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_02200PE=4SV=1	REV__tr|A0A553SS11|A0A553SS11_NIACIOxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_02200PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	423.9225769042969	2	423.258185	844.501818	-1.2114	-0.00051273	1.4524	0.00061474	0.24103	0.00010202	423.2587376981858	43.539	0.71249	40.532	40.326	41.038	-3.0074					17	13	2	0	0	0	0.028476	1	2145	2145		23.042	6.3375	1	26544	+		59830	30788	49341	49387	65637	65637					0.07334686385797795
VGSDVIKK	8	Unmodified	_VGSDVIKK_					0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-MSMS	OvCa99_classI_Rep5	1	423.2591247558594	2	423.258185	844.501818	-0.37634	-0.00015929	0.17524	7.4174E-05	-0.20109	-8.5115E-05	423.2581905661982	39.568	1.8175	39.568	39.332	41.149	0					108	40	4	0	0	0	0.68714	2	2408	2408;2424		45.952	1.8352	1	10398000	+		59831	22589	49342	49388	65638;65639	65638					0.07334686385797795
VGSEGKSGI	9	Unmodified	_VGSEGKSGI_					0	0	0			REV__nc|ENSG00000124749|Q96P44-3|COL21A1	REV__nc|ENSG00000124749|Q96P44-3|COL21A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	416.2323913574219	2	417.2218	832.429047	-0.32303	-0.00013477	1.7565	0.00073287	1.4335	0.00059809	417.22232756442565	34.912	0.37506	34.912	34.725	35.1	0					10	7	2	0	0	0	0.027462	1	1724	1724		39.253	7.298	1	30853	+		59832	18703	49343	49389	65640	65640					0.006129325923780016
VGSFKPKLLL	10	Unmodified	_VGSFKPKLLL_					0	0	0			REV__ENST00000568930.1_1_16:50347751-50349413:+|nuORF	REV__ENST00000568930.1_1_16:50347751-50349413:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3261108398438	2	551.35516	1100.69577	-0.28507	-0.00015717	-2.6805	-0.0014779	-2.9655	-0.0016351	551.353345907095	62.102	0.38428	62.102	61.869	62.253	0					12	8	2	0	0	0	0.026681	1	5516	5516		44.377	0.26039	1	278970	+		59833	18535	49344	49390	65641	65641					0.1494464282188801
VGSHMDLV	8	Unmodified	_VGSHMDLV_					0	0	0		ENST00000354485.5_1_9:676972-730286:+|nuORF;ENST00000489369.5_1_9:676972-732786:+|nuORF;nc|ENSG00000107104|Q14678-2|KANK1;ENSG00000107104|ENST00000382297|KANK1	ENST00000354485.5_1_9:676972-730286:+|nuORF	ENST00000354485.5_1_9:676972-730286:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	428.7491760253906	2	429.212921	856.411288	-0.051759	-2.2215E-05	-3.4	-0.0014593	-3.4518	-0.0014815	429.21134185564847	58.728	0.36231	58.728	58.53	58.892	0					14	8	2	0	0	0	0.028476	1	5030	5030		35.201	3.2459	1	506680			59834	2586	49345	49391	65642	65642					-0.022661059341317014
VGSIFMVL	8	Unmodified	_VGSIFMVL_					0	0	0			REV__ENSG00000180205|ENST00000326000|WFDC9	REV__ENSG00000180205|ENST00000326000|WFDC9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	433.7469787597656	2	433.246232	864.477911	0.93245	0.00040398	3.6051	0.0015619	4.5375	0.0019659	433.2475578984569	47.781	0.9634	44.673	44.384	45.348	-3.1077					37	18	3	0	0	0	0.028476	1	2668	2668		20.482	0	1	128680	+		59835	22163	49346	49392	65643	65643					0.040251296277801885
VGSIFMVL	8	Unmodified	_VGSIFMVL_					0	0	0			REV__ENSG00000180205|ENST00000326000|WFDC9	REV__ENSG00000180205|ENST00000326000|WFDC9	MULTI-MATCH	OvCa9_classI_Rep2	2		2	433.246232	864.477911	-0.61419	-0.0002661	5.0484	0.0021872	4.4342	0.0019211	433.2482890629192	47.633	0.59413	44.923	44.687	45.281	-2.7097	0.125	0.00076437	NaN	20.482	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24354	+		59836	22163	49346	49392							0.040251296277801885
VGSIIPILSL	10	Unmodified	_VGSIIPILSL_					0	0	0			REV__nc|ENSG00000127526|Q96K37-3|SLC35E1	REV__nc|ENSG00000127526|Q96K37-3|SLC35E1	MULTI-MSMS	OvCa9_classI_Rep3	3	506.3250732421875	2	506.326068	1010.63758	-1.1859	-0.00060045	-1.3158	-0.00066623	-2.5017	-0.0012667	506.3252171865675	75.863	1.6032	73.491	73.112	74.715	-2.3715					111	30	6	0	0	0	0.46756	1	3859	3859		58.782	9.3404	1	794960	+		59837	18819	49347	49393	65644	65644					0.13268961176606808
VGSIIPILSL	10	Unmodified	_VGSIIPILSL_					0	0	0			REV__nc|ENSG00000127526|Q96K37-3|SLC35E1	REV__nc|ENSG00000127526|Q96K37-3|SLC35E1	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.3254089355469	2	506.326068	1010.63758	-0.73274	-0.000371	-2.0809	-0.0010536	-2.8136	-0.0014246	506.3247571344643	76.963	1.4521	74.091	73.804	75.256	-2.8727					91	29	6	0	0	0	0.3976	1	6131	6131		68.787	10.005	1	929890	+		59838	18819	49347	49393	65645	65645					0.13268961176606808
VGSKLEIRN	9	Unmodified	_VGSKLEIRN_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3287048339844	2	508.298373	1014.58219	-0.35519	-0.00018054	-0.16498	-8.386E-05	-0.52018	-0.00026441	508.29797329836134	65.365	0.75867	65.365	65.072	65.831	0					37	18	4	0	0	0	0.027462	1	5974	5974		49.442	17.487	1	6071500			59839	5793;36288	49348	49394	65646	65646					0.07548547708859132
VGSKPLYV	8	Unmodified	_VGSKPLYV_					0	0	0		nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	MULTI-MSMS	OvCa9_classI_Rep4_	4	431.75628662109375	2	431.755278	861.496004	2.0731	0.00089509	-2.2195	-0.00095829	-0.14638	-6.32E-05	431.7541716949021	67.47	2.0665	63.98	63.344	65.411	-3.4902					91	41	3	0	0	0	0.30448	4	4949	4949;4957;4971;4985		106.42	40.612	1	775040			59840	1844	49349	49395	65647;65648;65649;65650	65647					0.059715878741258166
VGSKPLYV	8	Unmodified	_VGSKPLYV_					0	0	0		nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	431.755278	861.496004	-0.15297	-6.6047E-05	0.35856	0.00015481	0.20558	8.8761E-05	431.75531757844453	66.747	1.8338	64.052	63.418	65.252	-2.6958	0.035962	0.00075638	NaN	106.42	78	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185270			59841	1844	49349	49395							0.059715878741258166
VGSLLKGR	8	Unmodified	_VGSLLKGR_					0	0	0		ENSG00000253251|ENST00000510585|SHLD3	ENSG00000253251|ENST00000510585|SHLD3	ENSG00000253251|ENST00000510585|SHLD3	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.5682067871094	2	415.266345	828.518136	0.3637	0.00015103	-1.0731	-0.00044562	-0.70939	-0.00029459	415.2656935133043	41.293	0.22633	41.293	41.104	41.33	0					7	4	2	0	0	0	0.028476	1	2545	2545		12.959	0.75233	1	21177			59842	9426	49350	49396	65651	65651					0.09701812342564153
VGSLPGLVK	9	Unmodified	_VGSLPGLVK_					0	0	0			REV__tr|A0A553ST11|A0A553ST11_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_03900PE=3SV=1	REV__tr|A0A553ST11|A0A553ST11_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_03900PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	435.2777404785156	2	435.276378	868.538203	0.43024	0.00018728	-0.74147	-0.00032274	-0.31122	-0.00013547	435.2759022786098	74.933	1.3076	71.702	71.385	72.693	-3.2308					69	26	4	0	0	0	0.071436	1	5876	5876		106.42	0	1	935820	+		59843	30903	49351	49397	65652	65652					0.09867563282523406
VGSLPGLVK	9	Unmodified	_VGSLPGLVK_					0	0	0			REV__tr|A0A553ST11|A0A553ST11_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_03900PE=3SV=1	REV__tr|A0A553ST11|A0A553ST11_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_03900PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	435.276378	868.538203	0.21427	9.3268E-05	-0.014283	-6.217E-06	0.19999	8.7051E-05	435.27632956663933	73.836	0.5453	71.349	71.125	71.67	-2.4873	-0.17676	0.00040867	NaN	106.42	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22293	+		59844	30903	49351	49397							0.09867563282523406
VGSLRRVI	8	Unmodified	_VGSLRRVI_					0	0	0		ENSG00000118231|ENST00000264376|CRYGD	ENSG00000118231|ENST00000264376|CRYGD	ENSG00000118231|ENST00000264376|CRYGD	MULTI-SECPEP	OvCa9_classI_Rep3	3	450.2825927734375	2	450.292894	898.571235	-0.82381	-0.00037096	2.9358	0.001322	2.112	0.00095101	450.2942110771354	82.886	0.29997	80.589	80.431	80.731	-2.2963					7	5	2	0	0	0	0.028476	1	4712	4712		8.2313	0	1	10651			59845	3296	49352	49398	65653	65653					0.11789190125227833
VGSMGVAAIV	10	Unmodified	_VGSMGVAAIV_					0	0	0		ENSG00000167664|ENST00000595645|TMIGD2;nc|ENSG00000167664|Q96BF3|TMIGD2	ENSG00000167664|ENST00000595645|TMIGD2	ENSG00000167664|ENST00000595645|TMIGD2	MULTI-MSMS	OvCa9_classI_Rep4_	4	452.2541809082031	2	452.252046	902.489538	0.61622	0.00027869	3.7958	0.0017166	4.412	0.0019953	452.25355541518655	21.533	1.7415	20.194	19.77	21.512	-1.3386					84	35	3	0	0	0	0.64063	1	225	225		37.159	9.2769	1	281670			59846	6827	49353	49399	65654	65654					0.034393266511074216
VGSNYRPSFLQ	11	Unmodified	_VGSNYRPSFLQ_					0	0	0		nc|ENSG00000029153|Q8WYA1-9|BMAL2;nc|ENSG00000029153|Q8WYA1-6|BMAL2;nc|ENSG00000029153|Q8WYA1-8|BMAL2;nc|ENSG00000029153|Q8WYA1-7|BMAL2;nc|ENSG00000029153|Q8WYA1-4|BMAL2;nc|ENSG00000029153|Q8WYA1-3|BMAL2;nc|ENSG00000029153|Q8WYA1-5|BMAL2;nc|ENSG00000029153|Q8WYA1-2|BMAL2;ENSG00000029153|ENST00000266503|BMAL2	nc|ENSG00000029153|Q8WYA1-9|BMAL2	nc|ENSG00000029153|Q8WYA1-9|BMAL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	422.7433166503906	3	423.219172	1266.63569	-1.0431	-0.00044148	0.67444	0.00028544	-0.36869	-0.00015604	423.21864873341497	45.843	0.67973	42.788	42.526	43.206	-3.0551					27	12	3	0	0	0	0.026174	1	2345	2345		12.433	0	1	32709			59847	1061	49354	49400	65655	65655					0.013033004207045451
VGSPDQDL	8	Unmodified	_VGSPDQDL_					0	0	0		ENSG00000169126|ENST00000305242|ODAD2	ENSG00000169126|ENST00000305242|ODAD2	ENSG00000169126|ENST00000305242|ODAD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.92236328125	2	415.698158	829.381762	0.40014	0.00016634	1.3101	0.00054462	1.7103	0.00071096	415.6986810044733	40.791	0.39444	40.791	40.619	41.014	0					18	8	3	0	0	0	0.028476	1	2479	2479		18.324	3.6603	1	147690			59848	6978	49355	49401	65656	65656					-0.03975346678612368
VGSREGHL	8	Unmodified	_VGSREGHL_					0	0	0		ENSG00000103064|ENST00000219343|SLC7A6;ENSG00000103257|ENST00000261622|SLC7A5;ENSG00000155465|ENST00000674313|SLC7A7	ENSG00000103064|ENST00000219343|SLC7A6;ENSG00000103257|ENST00000261622|SLC7A5;ENSG00000155465|ENST00000674313|SLC7A7	ENSG00000103064|ENST00000219343|SLC7A6	MULTI-SECPEP	OvCa99_classI_Rep5	1	427.7402038574219	2	427.727584	853.440614	-0.34496	-0.00014755	1.2037	0.00051487	0.85877	0.00036732	427.728008068102	40.323	0.37025	40.323	40.016	40.386	0					10	7	2	0	0	0	0.028476	1	2440	2440		47.916	10.887	1	74927			59849	2280;5785;2300	49356	49402	65657	65657					0.008031744063714541
VGSRTSPRSRT	11	Unmodified	_VGSRTSPRSRT_					0	0	0		ENST00000372480.1_1_9:132396519-132396564:+|nuORF	ENST00000372480.1_1_9:132396519-132396564:+|nuORF	ENST00000372480.1_1_9:132396519-132396564:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	402.2470703125	3	401.889937	1202.64798	1.2454	0.00050052	1.3613	0.0005471	2.6067	0.0010476	401.890486452585	59.405	0.98687	56.625	56.137	57.124	-2.7801					26	18	2	0	0	0	0.026089	1	4333	4333		15.337	4.7756	1	15133			59850	10982	49357	49403	65658	65658					0.05476336883748445
VGSRTSPRSRT	11	Unmodified	_VGSRTSPRSRT_					0	0	0		ENST00000372480.1_1_9:132396519-132396564:+|nuORF	ENST00000372480.1_1_9:132396519-132396564:+|nuORF	ENST00000372480.1_1_9:132396519-132396564:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	401.889937	1202.64798	2.3442	0.00094212	-0.26562	-0.00010675	2.0786	0.00083536	401.88979972339763	60.105	0.987	56.675	56.358	57.345	-3.43	0.025147	-0.00071416	NaN	15.337	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56278			59851	10982	49357	49403							0.05476336883748445
VGSSFPVRPA	10	Unmodified	_VGSSFPVRPA_					0	0	0			REV__ENST00000320876.10_2_18:2655788-2655884:+|nuORF	REV__ENST00000320876.10_2_18:2655788-2655884:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.2785949707031	2	508.779816	1015.54508	2.1786	0.0011084	-4.0149	-0.0020427	-1.8363	-0.00093427	508.77809003985755	77.018	0.37016	77.018	76.841	77.211	0					15	8	2	0	0	0	0.026734	1	7735	7735		47.657	0	1	1998900	+		59852	24443	49358	49404	65659	65659					0.03792876163083747
VGSTRGLVI	9	Unmodified	_VGSTRGLVI_					0	0	0			REV__nc|ENSG00000105699|Q86X29-2|LSR	REV__nc|ENSG00000105699|Q86X29-2|LSR	MULTI-MSMS	OvCa9_classI_Rep2	2	451.279052734375	2	451.276909	900.539266	2.3933	0.00108	1.8354	0.00082829	4.2287	0.0019083	451.277592402024	110.6	2.0227	110.43	110.06	112.08	-0.17237					101	40	4	0	0	0	0.31747	1	10457	10457		60.972	0	1	1089100	+		59853	17751	49359	49405	65660	65660					0.08501777651417797
VGSVTMSVK	9	Unmodified	_VGSVTMSVK_					0	0	0			REV__tr|A0A7D7A5N2|A0A7D7A5N2_9CLOTDUF2922domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06770PE=4SV=1	REV__tr|A0A7D7A5N2|A0A7D7A5N2_9CLOTDUF2922domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06770PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	454.2784729003906	2	454.249503	906.484453	0.098873	4.4913E-05	1.2557	0.00057042	1.3546	0.00061533	454.24981860988163	68.696	0.37672	68.696	68.523	68.9	0					15	8	2	0	0	0	0.027441	1	6493	6493		15.642	0	1	257660	+		59854	32633	49360	49406	65661	65661					0.02747022788491904
VGTAAGVAR	9	Unmodified	_VGTAAGVAR_					0	0	0		ENST00000487162.1_1_22:50967616-50968379:-|nuORF	ENST00000487162.1_1_22:50967616-50968379:-|nuORF	ENST00000487162.1_1_22:50967616-50968379:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.8826904296875	2	401.232502	800.450451	0.7347	0.00029478	-0.19575	-7.854E-05	0.53895	0.00021624	401.2323791580314	51.994	0.51789	51.994	51.829	52.347	0					17	11	2	0	0	0	0.027462	1	4096	4096		11.511	0	1	373730			59855	12638	49361	49407	65662	65662					0.04224362411741822
VGTAWFFG	8	Unmodified	_VGTAWFFG_					0	0	0		ENSG00000172640|ENST00000310248|OR10AD1	ENSG00000172640|ENST00000310248|OR10AD1	ENSG00000172640|ENST00000310248|OR10AD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.2442321777344	2	442.718696	883.422839	0.51401	0.00022756	-3.9645	-0.0017552	-3.4505	-0.0015276	442.71681504532603	59.101	0.18184	59.101	59.011	59.192	0					7	4	2	0	0	0	0.028476	1	5070	5070		49.211	28.729	1	165000			59856	7309	49362	49408	65663	65663					-0.023535408484804066
VGTFHNGA	8	Unmodified	_VGTFHNGA_					0	0	0			REV__ENST00000334370.8_1_19:42875512-42879797:+|nuORF	REV__ENST00000334370.8_1_19:42875512-42879797:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	401.69580078125	2	401.695752	801.376952	1.4743	0.00059223	-0.90907	-0.00036517	0.56526	0.00022706	401.6952824496091	32.082	0.64614	32.082	31.906	32.553	0					24	12	3	0	0	0	0.7224	1	1379	1379		38.806	10.552	1	469390	+		59857	24565	49363	49409	65664	65664					-0.03168186030711695
VGTLQVLGV	9	Unmodified	_VGTLQVLGV_					0	0	0			REV__tr|A0A553SIQ4|A0A553SIQ4_NIACIPurinepermeaseOS=NialliacirculansOX=1397GN=CEQ21_15300PE=3SV=1	REV__tr|A0A553SIQ4|A0A553SIQ4_NIACIPurinepermeaseOS=NialliacirculansOX=1397GN=CEQ21_15300PE=3SV=1	MSMS	OvCa99_classI_Rep5	1	443.27789306640625	2	443.273835	884.533118	NaN	NaN	NaN	NaN	NaN	NaN	NaN	51.135	1	51.135	50.635	51.635	0								0	0	0	0.16648	1	3926	3926		60.972	9.6365	1		+		59858	29917	49364	49410	65665	65665					0.08623259419891838
VGTLVTAAF	9	Unmodified	_VGTLVTAAF_					0	0	0			REV__tr|A0A553SH38|A0A553SH38_NIACISulPfamilyinorganicaniontransporterOS=NialliacirculansOX=1397GN=CEQ21_12060PE=4SV=1	REV__tr|A0A553SH38|A0A553SH38_NIACISulPfamilyinorganicaniontransporterOS=NialliacirculansOX=1397GN=CEQ21_12060PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	439.7532043457031	2	439.752736	877.490919	0.67889	0.00029855	-0.077368	-3.4023E-05	0.60153	0.00026452	439.7524642053137	104.1	1.1438	102.67	102.39	103.54	-1.4347					53	21	4	0	0	0	0.34496	1	7250	7250		57.811	2.3071	1	231150	+		59859	29770	49365	49411	65666	65666					0.047272840115169856
VGTPPQAH	8	Unmodified	_VGTPPQAH_					0	0	0		NLRP1|p.M686Rfs*73|1|0.05|ENSG00000091592|chr17:5558638-5558639|CA/-|frameshift_variant;ENST00000571307.1_1_17:5433304-5487319:-|nuORF;nc|ENSG00000091592|Q9C000-5|NLRP1;nc|ENSG00000091592|Q9C000-3|NLRP1;nc|ENSG00000091592|Q9C000-2|NLRP1;nc|ENSG00000091592|Q9C000-4|NLRP1;ENSG00000091592|ENST00000572272|NLRP1	NLRP1|p.M686Rfs*73|1|0.05|ENSG00000091592|chr17:5558638-5558639|CA/-|frameshift_variant	NLRP1|p.M686Rfs*73|1|0.05|ENSG00000091592|chr17:5558638-5558639|CA/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.22808837890625	2	403.711402	805.408252	0.39295	0.00015864	-0.56814	-0.00022936	-0.17519	-7.0725E-05	403.71251193005645	27.945	0.24953	27.945	27.841	28.091	0					6	4	2	0	0	0	0.028476	1	866	866		35.201	14.719	1	4502.8			59860	1873	49366	49412	65667	65667					-0.0022361299662634337
VGTPRGALA	9	Unmodified	_VGTPRGALA_					0	0	0		ENST00000586689.5_2_17:74733959-74734425:+|nuORF;ENST00000588460.5_1_17:74733800-74734238:+|nuORF	ENST00000586689.5_2_17:74733959-74734425:+|nuORF	ENST00000586689.5_2_17:74733959-74734425:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	421.23602294921875	2	421.248152	840.481751	-1.4519	-0.00061162	-0.54671	-0.0002303	-1.9986	-0.00084192	421.2470733223607	43.726	0.4531	40.718	40.536	40.989	-3.0074					13	8	2	0	0	0	0.027462	1	2146	2146		35.618	0	1	13098			59861	14050	49367	49413	65668	65668					0.05512935445858602
VGTTHDGK	8	Unmodified	_VGTTHDGK_					0	0	0			REV__ENST00000460688.1_1_9:72783617-72785588:+|nuORF	REV__ENST00000460688.1_1_9:72783617-72785588:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.2497253417969	2	407.706317	813.398081	0.78191	0.00031879	-1.2063	-0.00049183	-0.42442	-0.00017304	407.705860208861	39.08	0.45033	39.08	38.882	39.332	0					13	9	2	0	0	0	0.028476	1	2302	2302		12.959	0	1	28891	+		59862	21052	49368	49414	65669	65669					-0.0160822072184601
VGTTQECYIF	10	Unmodified	_VGTTQECYIF_					0	0	0		ENST00000297145.8_1_7:112461974-112462037:-|nuORF	ENST00000297145.8_1_7:112461974-112462037:-|nuORF	ENST00000297145.8_1_7:112461974-112462037:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.3433227539062	2	580.768257	1159.52196	-0.58986	-0.00034257	-0.28314	-0.00016444	-0.873	-0.00050701	580.7679335243386	30.069	0.25151	30.069	29.885	30.136	0					7	4	2	0	0	0	0.027117	1	1112	1112		30.504	4.9296	1	12583			59863	10148	49369	49415	65670	65670					-0.051419307365677014
VGTVLLLI	8	Unmodified	_VGTVLLLI_					0	0	0		nc|ENSG00000143952|Q9P1Q0-3|VPS54;nc|ENSG00000143952|Q9P1Q0-4|VPS54;nc|ENSG00000143952|Q9P1Q0-2|VPS54;ENSG00000143952|ENST00000272322|VPS54	nc|ENSG00000143952|Q9P1Q0-3|VPS54	nc|ENSG00000143952|Q9P1Q0-3|VPS54	MULTI-SECPEP	OvCa9_classI_Rep2	2	414.5556640625	2	414.283672	826.552791	-0.33035	-0.00013686	-2.6382	-0.001093	-2.9685	-0.0012298	414.2824761193808	55.111	0.74931	52.297	51.972	52.721	-2.8139					19	14	2	0	0	0	0.028476	1	3864	3864		9.4706	0	1	22108			59864	15076	49370	49416	65671	65671					0.1325763543065932
VGTVLLLI	8	Unmodified	_VGTVLLLI_					0	0	0		nc|ENSG00000143952|Q9P1Q0-3|VPS54;nc|ENSG00000143952|Q9P1Q0-4|VPS54;nc|ENSG00000143952|Q9P1Q0-2|VPS54;ENSG00000143952|ENST00000272322|VPS54	nc|ENSG00000143952|Q9P1Q0-3|VPS54	nc|ENSG00000143952|Q9P1Q0-3|VPS54	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	414.283672	826.552791	-0.46345	-0.000192	-2.8849	-0.0011951	-3.3483	-0.0013872	414.28218696249775	55.63	0.55783	52.336	52.16	52.718	-3.2944	0.019422	-0.00015632	NaN	9.4706	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17024			59865	15076	49370	49416							0.1325763543065932
VGTWVVYLV	9	Unmodified	_VGTWVVYLV_					0	0	0		tr|A0A7D6VS33|A0A7D6VS33_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04470PE=4SV=1	tr|A0A7D6VS33|A0A7D6VS33_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04470PE=4SV=1	tr|A0A7D6VS33|A0A7D6VS33_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04470PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.2962646484375	2	518.29731	1034.58007	-0.7282	-0.00037742	-4.0478	-0.002098	-4.776	-0.0024754	518.2952267332782	93.923	2.6605	91.416	91.171	93.831	-2.5072					159	53	5	0	0	0	0.44294	1	8246	8246		47.916	0.25827	1	7836100			59866	34981	49371	49417	65672	65672					0.06416118971037577
VGVEQVQT	8	Unmodified	_VGVEQVQT_					0	0	0		ENSG00000136383|ENST00000258888|ALPK3	ENSG00000136383|ENST00000258888|ALPK3	ENSG00000136383|ENST00000258888|ALPK3	MULTI-SECPEP	OvCa99_classI_Rep5	1	429.73809814453125	2	430.229625	858.444697	-0.044926	-1.9329E-05	0.72119	0.00031028	0.67626	0.00029095	430.22993282981713	47.323	0.51715	47.323	47.121	47.638	0					17	11	2	0	0	0	0.028476	1	3392	3392		12.207	0.69583	1	125240			59867	4488	49372	49418	65673	65673					0.009812191094397349
VGVLKGAMP	9	Unmodified	_VGVLKGAMP_					0	0	0		tr|A0A553SHE9|A0A553SHE9_NIACIHypoxanthinephosphoribosyltransferaseOS=NialliacirculansOX=1397GN=hptPE=3SV=1	tr|A0A553SHE9|A0A553SHE9_NIACIHypoxanthinephosphoribosyltransferaseOS=NialliacirculansOX=1397GN=hptPE=3SV=1	tr|A0A553SHE9|A0A553SHE9_NIACIHypoxanthinephosphoribosyltransferaseOS=NialliacirculansOX=1397GN=hptPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	435.26885986328125	2	436.257131	870.499709	0.25411	0.00011086	3.6898	0.0016097	3.944	0.0017206	436.2585719325193	39.385	0.84397	36.458	36.196	37.04	-2.9264					22	16	2	0	0	0	0.027462	1	1647	1647		26.796	9.4311	1	50042			59868	33262	49373	49419	65674	65674					0.05927934376336452
VGVLLLFVLLL	11	Unmodified	_VGVLLLFVLLL_					0	0	0		ENSG00000171587|ENST00000400454|DSCAM;KIAA0146-DSCAM|1|fusion	ENSG00000171587|ENST00000400454|DSCAM	ENSG00000171587|ENST00000400454|DSCAM	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.5790100097656	3	400.277299	1197.81007	0.80378	0.00032173	1.2818	0.00051309	2.0856	0.00083482	400.277764912065	42.301	1.0326	42.301	42.024	43.057	0					32	23	2	0	0	0	0.025814	1	2803	2803		33.922	18.589	1	632660			59869	7215	49374	49420	65675	65675					0.2190753258400946
VGVRDKGISRL	11	Unmodified	_VGVRDKGISRL_					0	0	0		ENST00000545217.5_1_19:52074658-52074724:+|nuORF	ENST00000545217.5_1_19:52074658-52074724:+|nuORF	ENST00000545217.5_1_19:52074658-52074724:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	400.5781555175781	3	400.578811	1198.7146	1.5163	0.00060738	-1.5729	-0.00063005	-0.056599	-2.2672E-05	400.5781196658877	32.43	0.69144	32.43	32.105	32.796	0					36	11	5	0	0	0	0.69015	1	1414	1414		33.039	1.4051	1	640250			59870	13519	49375	49421	65676	65676					0.12319572445653648
VGVRDKGISRL	11	Unmodified	_VGVRDKGISRL_					0	0	0		ENST00000545217.5_1_19:52074658-52074724:+|nuORF	ENST00000545217.5_1_19:52074658-52074724:+|nuORF	ENST00000545217.5_1_19:52074658-52074724:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	400.578811	1198.7146	3.0449	0.0012197	-2.4349	-0.00097535	0.61009	0.00024439	400.57777080056775	35.543	0.34878	32.694	32.491	32.839	-2.849	0.13205	-0.00076675	NaN	33.039	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21324			59871	13519	49375	49421							0.12319572445653648
VGVRVLLLR	9	Unmodified	_VGVRVLLLR_					0	0	0			REV__ENST00000475011.1_1_7:100230563-100231157:-|nuORF	REV__ENST00000475011.1_1_7:100230563-100231157:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	512.8544311523438	2	512.853119	1023.69168	2.9418	0.0015087	-0.80065	-0.00041061	2.1412	0.0010981	512.8525880054339	97.837	1.0728	97.837	97.479	98.552	0					53	24	4	0	0	0	0.36502	1	10742	10742		55.504	0	1	1631900	+		59872	17793	49376	49422	65677	65677					0.18078598118847822
VGWAASGLLLL	11	Unmodified	_VGWAASGLLLL_					0	0	0		ENSG00000189143|ENST00000340958|CLDN4	ENSG00000189143|ENST00000340958|CLDN4	ENSG00000189143|ENST00000340958|CLDN4	MULTI-MSMS	OvCa9_classI_Rep3	3	550.3263549804688	2	550.329142	1098.64373	-1.5659	-0.00086175	-2.871	-0.00158	-4.4368	-0.0024417	550.3275336090328	86.284	1.4089	84.064	83.686	85.095	-2.2204					106	27	5	0	0	0	0.37018	1	5172	5172		63.306	0	1	3899600			59873	8539	49377	49423	65678	65678					0.09835479408161518
VGYAVSTF	8	Unmodified	_VGYAVSTF_					0	0	0		DHCR7|p.L187V|1|0.08|ENSG00000172893|chr11:71441294-71441294|G/C|missense_variant	DHCR7|p.L187V|1|0.08|ENSG00000172893|chr11:71441294-71441294|G/C|missense_variant	DHCR7|p.L187V|1|0.08|ENSG00000172893|chr11:71441294-71441294|G/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	422.5498352050781	2	422.215986	842.417419	0.33972	0.00014344	-2.8286	-0.0011943	-2.4889	-0.0010508	422.21454931658246	32.638	0.44334	32.638	32.353	32.796	0					10	8	2	0	0	0	0.028476	1	1406	1406		14.664	0	1	14015			59874	734	49378	49424	65679	65679					-0.010092644309565912
VGYILTSIL	9	Unmodified	_VGYILTSIL_					0	0	0			REV__tr|A0A553STL3|A0A553STL3_NIACIGntPfamilypermeaseOS=NialliacirculansOX=1397GN=CEQ21_05095PE=4SV=1	REV__tr|A0A553STL3|A0A553STL3_NIACIGntPfamilypermeaseOS=NialliacirculansOX=1397GN=CEQ21_05095PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	489.8007507324219	2	489.797143	977.579734	0.35762	0.00017516	4.1576	0.0020364	4.5152	0.0022115	489.79900077673824	160.64	3.1469	160.64	159.38	162.53	0					149	62	3	0	0	0	0.46377	1	18801	18801		45.952	3.4775	1	288360	+		59875	30980	49379	49425	65680	65680					0.09004699251204329
VHALEVIGI	9	Unmodified	_VHALEVIGI_					0	0	0			REV__nc|ENSG00000104327|P05937-2|CALB1	REV__nc|ENSG00000104327|P05937-2|CALB1	MULTI-MSMS	OvCa9_classI_Rep3	3	475.7872314453125	2	475.78711	949.559667	-1.1284	-0.0005369	1.2052	0.00057342	0.07677	3.6526E-05	475.7874490810867	140.15	0.93607	139.11	138.74	139.68	-1.0339					36	18	3	0	0	0	0.57242	1	11517	11517		35.201	1.6851	1	94016	+		59876	17659	49380	49426	65681	65681					0.08286948311229025
VHALIGITK	9	Unmodified	_VHALIGITK_					0	0	0			REV__tr|A0A7D6VP39|A0A7D6VP39_9CLOTTetM/TetW/TetO/TetSfamilytetracyclineresistanceribosomalprotectionproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15735PE=4SV=1	REV__tr|A0A7D6VP39|A0A7D6VP39_9CLOTTetM/TetW/TetO/TetSfamilytetracyclineresistanceribosomalprotectionproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15735PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.293701171875	2	476.302927	950.591301	0.49754	0.00023698	-0.094822	-4.5164E-05	0.40271	0.00019181	476.3027226757016	72.598	0.86184	72.598	72.333	73.195	0					40	21	3	0	0	0	0.027462	1	7123	7123		12.207	8.5225	1	963140	+		59877	31227	49381	49427	65682	65682					0.11402941065171035
VHAMIRKS	8	Unmodified	_VHAMIRKS_					0	0	0		tr|A0A553SKJ2|A0A553SKJ2_NIACIRibosomebiogenesisGTPaseYqeHOS=NialliacirculansOX=1397GN=yqeHPE=4SV=1	tr|A0A553SKJ2|A0A553SKJ2_NIACIRibosomebiogenesisGTPaseYqeHOS=NialliacirculansOX=1397GN=yqeHPE=4SV=1	tr|A0A553SKJ2|A0A553SKJ2_NIACIRibosomebiogenesisGTPaseYqeHOS=NialliacirculansOX=1397GN=yqeHPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.2560119628906	2	471.271104	940.527655	0.48805	0.00023	1.331	0.00062724	1.819	0.00085724	471.27178443099956	46.002	0.26763	46.002	45.844	46.112	0					10	5	2	0	0	0	0.028476	1	3208	3208		8.8223	6.298	1	1124000			59878	33621	49382	49428	65683	65683					0.055012573564454215
VHAVLLPQP	9	Unmodified	_VHAVLLPQP_					0	0	0		ENST00000460362.5_1_10:7830170-7838675:+|nuORF	ENST00000460362.5_1_10:7830170-7838675:+|nuORF	ENST00000460362.5_1_10:7830170-7838675:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.2516784667969	2	487.295102	972.575651	-0.028825	-1.4046E-05	4.0151	0.0019565	3.9862	0.0019425	487.29848172368895	31.704	0.24812	31.704	31.559	31.807	0					6	4	2	0	0	0	0.027462	1	1332	1332		25.45	2.4077	1	17177			59879	12152	49383	49429	65684	65684					0.08826654548136048
VHCESRSYTTL	11	Unmodified	_VHCESRSYTTL_					0	0	0			REV__ENSG00000180638|ENST00000433844|SLC47A2	REV__ENSG00000180638|ENST00000433844|SLC47A2	MULTI-SECPEP	OvCa99_classI_Rep5	1	432.24371337890625	3	432.539805	1294.59759	-0.67762	-0.0002931	-1.913	-0.00082744	-2.5906	-0.0011205	432.87342652075705	43.629	0.51595	43.629	43.393	43.909	0					28	11	3	0	0	0	0.025624	1	2904	2904		38.714	12.651	1	149910	+		59880	22183	49384	49430	65685	65685					-0.03792953556262546
VHCGSGPNR	9	Unmodified	_VHCGSGPNR_					0	0	0		nc|ENSG00000109189|P62068-2|USP46;ENST00000514536.5_1_4:53464769-53497293:-|nuORF;nc|ENSG00000109189|P62068-4|USP46;nc|ENSG00000109189|P62068-3|USP46;ENSG00000109189|ENST00000441222|USP46;ENSG00000152484|ENST00000282344|USP12	nc|ENSG00000109189|P62068-2|USP46;ENSG00000152484|ENST00000282344|USP12	ENSG00000152484|ENST00000282344|USP12	MULTI-MSMS	OvCa9_classI_Rep2	2	463.71343994140625	2	463.716693	925.418833	-4.8795	-0.0022627	-1.9261	-0.00089316	-6.8056	-0.0031559	463.7156659367406	158.37	0.54906	158.15	157.93	158.48	-0.22696					26	14	2	0	0	0	0.6926	1	16101	16101		20.482	2.1574	1	28002			59881	2704;5626	49385	49431	65686	65686					-0.046859536138413205
VHCKKKAI	8	Unmodified	_VHCKKKAI_					0	0	0			REV__SLC24A2|p.S531Rfs*7|1|0.08|ENSG00000155886|chr9:19521037-19521037|A/-|frameshift_variant	REV__SLC24A2|p.S531Rfs*7|1|0.08|ENSG00000155886|chr9:19521037-19521037|A/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	463.7698669433594	2	463.783847	925.553142	-0.38023	-0.00017634	-1.2024	-0.00055767	-1.5827	-0.00073402	463.7849372071674	54.445	0.17075	54.445	54.334	54.505	0					5	3	2	0	0	0	0.028476	1	4396	4396		28.254	1.4582	1	32194	+		59882	20446	49386	49432	65687	65687					0.08738731878850103
VHCLDGRA	8	Unmodified	_VHCLDGRA_					0	0	0		nc|ENSG00000116675|O75061-3|DNAJC6;nc|ENSG00000116675|O75061-4|DNAJC6;nc|ENSG00000116675|O75061|DNAJC6;ENSG00000116675|ENST00000371069|DNAJC6	nc|ENSG00000116675|O75061-3|DNAJC6	nc|ENSG00000116675|O75061-3|DNAJC6	MULTI-MSMS	OvCa99_classI_Rep5	1	435.7195129394531	2	435.716162	869.41777	3.2494	0.0014158	3.505	0.0015272	6.7544	0.002943	435.7176844785988	75.581	2.3802	75.581	75.292	77.672	0					162	58	5	0	0	0	0.66704	1	7506	7506		50.025	0	1	26670000			59883	3193	49387	49433	65688	65688					-0.022161679827377156
VHDSQGFFKK	10	Unmodified	_VHDSQGFFKK_					0	0	0			REV__tr|A0A7D7A2H6|A0A7D7A2H6_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16950PE=4SV=1	REV__tr|A0A7D7A2H6|A0A7D7A2H6_9CLOTGlycosyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_16950PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	597.329345703125	2	596.809105	1191.60366	2.5984	0.0015508	-3.5609	-0.0021252	-0.96247	-0.00057441	597.3084341956692	80.466	0.54819	80.466	80.111	80.659	0					17	12	2	0	0	0	0.026891	1	8214	8214		39.253	0	1	171580	+		59884	32537	49388	49434	65689	65689					0.015519327375614012
VHDTSGTAL	9	Unmodified	_VHDTSGTAL_					0	0	0			REV__BRWD1|p.V1635Wfs*6|1|0.05|ENSG00000185658|chr21:39199514-39199514|A/-|frameshift_variant	REV__BRWD1|p.V1635Wfs*6|1|0.05|ENSG00000185658|chr21:39199514-39199514|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.2701110839844	2	450.724707	899.43486	0.55402	0.00024971	-0.36527	-0.00016463	0.18875	8.5075E-05	450.7244047933883	62.256	0.43941	58.799	58.523	58.962	-3.4577					12	8	2	0	0	0	0.027417	1	4285	4285		37.159	5.2042	1	12260	+		59885	15714	49389	49435	65690	65690					-0.01887968895960057
VHEKCLVLLR	10	Unmodified	_VHEKCLVLLR_					0	0	0		ENST00000470910.5_1_3:39142410-39149053:-|nuORF;ENST00000466443.1_1_3:39142410-39149053:-|nuORF	ENST00000470910.5_1_3:39142410-39149053:-|nuORF	ENST00000470910.5_1_3:39142410-39149053:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	403.5509338378906	3	403.909392	1208.70635	0.51114	0.00020645	3.207	0.0012953	3.7182	0.0015018	403.91062378884743	37.289	0.2331	37.289	37.205	37.438	0					8	4	2	0	0	0	0.026975	1	2039	2039		14.086	0	1	15207			59886	12372	49390	49436	65691	65691					0.11034302204666346
VHEPPRKI	8	Unmodified	_VHEPPRKI_					0	0	0		ENSG00000048544|ENST00000053468|MRPS10	ENSG00000048544|ENST00000053468|MRPS10	ENSG00000048544|ENST00000053468|MRPS10	MULTI-MSMS	OvCa99_classI_Rep5	1	488.2913513183594	2	488.290351	974.566149	2.6783	0.0013078	-0.32962	-0.00016095	2.3486	0.0011468	488.2901522145805	90.208	0.57067	90.208	89.891	90.462	0					25	13	3	0	0	0	0.50674	1	9660	9660		76.847	8.3619	1	2180600			59887	1157	49391	49437	65692	65692					0.0778488626260696
VHEQKVSVI	9	Unmodified	_VHEQKVSVI_					0	0	0		ENSG00000076201|ENST00000265562|PTPN23;PTPN23|p.R1398Cfs*54|1|0.11|ENSG00000076201|chr3:47412295-47412296|-/TG|frameshift_variant	ENSG00000076201|ENST00000265562|PTPN23	ENSG00000076201|ENST00000265562|PTPN23	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.289794921875	2	519.800749	1037.58694	-0.88994	-0.00046259	1.7641	0.00091697	0.87414	0.00045438	519.8012606059568	53.929	0.77079	53.929	53.564	54.334	0					23	18	2	0	0	0	0.027462	1	4318	4318		23.042	0	1	453980			59888	1551	49392	49438	65693	65693					0.06965431851631365
VHERIVIL	8	Unmodified	_VHERIVIL_					0	0	0			REV__LGALS8|p.G37E|1|0.17|ENSG00000116977|chr1:236537561-236537561|G/A|missense_variant	REV__LGALS8|p.G37E|1|0.17|ENSG00000116977|chr1:236537561-236537561|G/A|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	489.80975341796875	2	489.808377	977.6022	0.19085	9.348E-05	-1.1225	-0.00054981	-0.93164	-0.00045633	489.8078535098852	63.358	2.9277	63.358	62.976	65.904	0					190	72	4	0	0	0	0.67745	1	5764	5764		47.916	1.9636	1	51424000	+		59889	28618	49393	49439	65694	65694					0.11250343439473909
VHFGIKMLC	9	Unmodified	_VHFGIKMLC_					0	0	0			REV__nc|ENSG00000090020|P19634-2|SLC9A1	REV__nc|ENSG00000090020|P19634-2|SLC9A1	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.7985229492188	2	524.277541	1046.54053	0.29135	0.00015275	-0.77453	-0.00040607	-0.48318	-0.00025332	524.2779117742405	40.729	0.2947	38.019	37.798	38.093	-2.7097					7	5	2	0	0	0	0.027462	1	2068	2068		26.796	0	1	20144	+		59890	17216	49394	49440	65695	65695					0.019119524243251362
VHFKGLQI	8	Unmodified	_VHFKGLQI_					0	0	0		tr|A0A553SJM5|A0A553SJM5_NIACIHDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_17010PE=4SV=1	tr|A0A553SJM5|A0A553SJM5_NIACIHDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_17010PE=4SV=1	tr|A0A553SJM5|A0A553SJM5_NIACIHDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_17010PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	471.28338623046875	2	471.281995	940.549437	0.81966	0.00038629	1.3526	0.00063746	2.1723	0.0010238	471.28160884070303	81.115	0.66573	81.115	80.827	81.493	0					33	15	3	0	0	0	0.73288	1	8341	8341		35.201	0	1	622410			59891	33519	49395	49441	65696	65696					0.0767838537666421
VHFLGIPV	8	Unmodified	_VHFLGIPV_					0	0	0		tr|A0A7D6VT24|A0A7D6VT24_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_15205PE=4SV=1	tr|A0A7D6VT24|A0A7D6VT24_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_15205PE=4SV=1	tr|A0A7D6VT24|A0A7D6VT24_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_15205PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	441.30120849609375	2	441.265813	880.517074	0.054632	2.4107E-05	-3.8704	-0.0017079	-3.8158	-0.0016838	441.26403146669475	60.838	0.45074	57.408	57.144	57.594	-3.43					18	8	3	0	0	0	0.028476	1	4133	4133		16.705	0	1	32181			59892	35082	49396	49442	65697	65697					0.07203597973648357
VHFLPLNSAQT	11	Unmodified	_VHFLPLNSAQT_					0	0	0		nc|ENSG00000167646|Q8N9W5-7|DNAAF3;ENSG00000167646|ENST00000524407|DNAAF3;nc|ENSG00000167646|Q8N9W5-6|DNAAF3;nc|ENSG00000167646|Q8N9W5-3|DNAAF3	nc|ENSG00000167646|Q8N9W5-7|DNAAF3	nc|ENSG00000167646|Q8N9W5-7|DNAAF3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	410.2278137207031	3	409.555784	1225.64552	1.2982	0.0005317	2.7414	0.0011227	4.0396	0.0016544	409.5567992951561	38.371	1.0399	35.444	35.057	36.097	-2.9264					38	20	2	0	0	0	0.026056	1	1450	1450		9.2118	0	1	47689			59893	6823	49397	49443	65698	65698					0.04172488426070231
VHFSTVLLL	9	Unmodified	_VHFSTVLLL_					0	0	0			REV__ENST00000517921.1_1_8:101730310-101730355:-|nuORF	REV__ENST00000517921.1_1_8:101730310-101730355:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.8388061523438	2	514.810585	1027.60662	1.7282	0.00088971	3.9963	0.0020573	5.7245	0.0029471	514.8122743198236	112.75	0.44865	112.75	112.52	112.97	0					18	9	3	0	0	0	0.027462	1	12811	12811		7.6903	0	1	815670	+		59894	27022	49398	49444	65699	65699					0.0939180786238012
VHFSTVLLL	9	Unmodified	_VHFSTVLLL_					0	0	0			REV__ENST00000517921.1_1_8:101730310-101730355:-|nuORF	REV__ENST00000517921.1_1_8:101730310-101730355:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.810585	1027.60662	0.74721	0.00038467	-3.116	-0.0016042	-2.3688	-0.0012195	514.8087965229664	112.67	0.54179	112.55	112.28	112.82	-0.12174	-0.10179	-0.0014941	NaN	7.6903	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20326	+		59895	27022	49398	49444							0.0939180786238012
VHFTDWLK	8	Unmodified	_VHFTDWLK_					0	0	0			REV__nc|ENSG00000054796|Q9Y5K1-2|SPO11	REV__nc|ENSG00000054796|Q9Y5K1-2|SPO11	MULTI-MSMS	OvCa9_classI_Rep2	2	523.277587890625	2	523.276909	1044.53927	1.3652	0.0007144	1.5063	0.00078822	2.8716	0.0015026	523.2775136788366	29.663	0.92439	26.953	26.732	27.656	-2.7097					38	18	3	0	0	0	0.73288	1	733	733		35.201	0	1	85060	+		59896	16704	49399	49445	65700	65700					0.01877777651429824
VHGRTALLF	9	Unmodified	_VHGRTALLF_					0	0	0		ENST00000309534.10_1_3:88104282-88104384:-|nuORF	ENST00000309534.10_1_3:88104282-88104384:-|nuORF	ENST00000309534.10_1_3:88104282-88104384:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.29571533203125	2	507.298176	1012.5818	0.22454	0.00011391	-1.038	-0.00052659	-0.81349	-0.00041268	507.2956796701824	30.801	1.0836	28.091	27.656	28.74	-2.7097					58	21	5	0	0	0	0.55588	1	886	886		37.159	5.6293	1	97785			59897	10274	49400	49446	65701	65701					0.07601172779652643
VHHPQPER	8	Unmodified	_VHHPQPER_					0	0	0			REV__ENST00000511915.1_1_12:112123944-112130701:+|nuORF	REV__ENST00000511915.1_1_12:112123944-112130701:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.809814453125	2	500.259582	998.504612	0.097816	4.8934E-05	-1.4612	-0.000731	-1.3634	-0.00068206	500.2588301934203	62.454	0.32794	62.454	62.253	62.581	0					13	7	2	0	0	0	0.028476	1	5543	5543		35.201	0	1	259950	+		59898	26931	49401	49447	65702	65702					0.005299545633306479
VHHPQPER	8	Unmodified	_VHHPQPER_					0	0	0			REV__ENST00000511915.1_1_12:112123944-112130701:+|nuORF	REV__ENST00000511915.1_1_12:112123944-112130701:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	500.259582	998.504612	-1.3943	-0.00069753	-1.1411	-0.00057086	-2.5355	-0.0012684	500.25901025667275	66.043	0.53315	62.557	62.276	62.809	-3.4854	0.051862	0.00018629	NaN	50.025	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56222	+		59899	26931	49401	49447							0.005299545633306479
VHHSKVSII	9	Unmodified	_VHHSKVSII_					0	0	0		ENSG00000171989|ENST00000307144|LDHAL6B	ENSG00000171989|ENST00000307144|LDHAL6B	ENSG00000171989|ENST00000307144|LDHAL6B	MULTI-MSMS	OvCa99_classI_Rep5	1	510.303955078125	2	510.303458	1018.59236	2.5139	0.0012828	-0.40368	-0.000206	2.1102	0.0010768	510.30304009885623	84.487	0.99165	84.487	84.177	85.169	0					54	23	3	0	0	0	0.34132	1	8839	8839		58.23	3.4536	1	3917400			59900	7257	49402	49448	65703	65703					0.08381155434108223
VHHTQHILP	9	Unmodified	_VHHTQHILP_					0	0	0		ENSG00000104941|ENST00000221538|RSPH6A	ENSG00000104941|ENST00000221538|RSPH6A	ENSG00000104941|ENST00000221538|RSPH6A	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.3126831054688	2	541.298707	1080.58286	1.9152	0.0010367	-0.65681	-0.00035553	1.2584	0.00068118	541.2995056940101	113.72	0.26096	113.72	113.57	113.83	0					7	5	2	0	0	0	0.027462	1	12951	12951		12.207	2.7363	1	73963			59901	2409	49403	49449	65704	65704					0.04579387148555725
VHICDLTR	8	Unmodified	_VHICDLTR_					0	0	0			REV__nc|ENSG00000131653|Q6Q0C0-2|TRAF7	REV__nc|ENSG00000131653|Q6Q0C0-2|TRAF7	MULTI-MSMS	OvCa9_classI_Rep2	2	478.75262451171875	2	478.752744	955.490935	-1.4226	-0.0006811	1.1828	0.00056628	-0.23984	-0.00011482	478.7532346703681	50.895	2.769	48.101	47.63	50.399	-2.794					110	55	3	0	0	0	0.7224	1	3335	3335		38.806	1.647	1	1064500	+		59902	19025	49404	49450	65705	65705					0.011409607398604749
VHIEVKENP	9	Unmodified	_VHIEVKENP_					0	0	0		ENSG00000158417|ENST00000289371|EIF5B;TXNDC9-EIF5B|1|fusion	ENSG00000158417|ENST00000289371|EIF5B	ENSG00000158417|ENST00000289371|EIF5B	MULTI-MSMS	OvCa99_classI_Rep5	1	532.7904052734375	2	532.790381	1063.56621	1.0864	0.00057882	1.1164	0.00059482	2.2028	0.0011736	532.7910217995403	155.89	1.117	155.89	155.58	156.7	0					42	21	2	0	0	0	0.5811	1	18292	18292		34.173	1.3601	1	53609			59903	5950	49405	49451	65706	65706					0.036968414719467546
VHKAKPTLK	9	Unmodified	_VHKAKPTLK_					0	0	0		nc|ENSG00000102786|Q9UL03-3|INTS6;ENSG00000102786|ENST00000311234|INTS6;ENST00000504674.1_1_5:39719945-39720791:-|nuORF	nc|ENSG00000102786|Q9UL03-3|INTS6	nc|ENSG00000102786|Q9UL03-3|INTS6	MULTI-MSMS	OvCa9_classI_Rep3	3	511.3269348144531	2	511.329476	1020.6444	-5.3559	-0.0027386	0.93899	0.00048013	-4.4169	-0.0022585	511.3298778479252	153.96	1.1884	152.95	152.62	153.81	-1.0076					68	24	4	0	0	0	0.64427	2	13199	13199;13213		26.693	3.6504	1	338570			59904	2253	49406	49452	65707;65708	65707					0.13490318847857452
VHKAVLKIR	9	Unmodified	_VHKAVLKIR_					0	0	0		ENSG00000136144|ENST00000378302|RCBTB1	ENSG00000136144|ENST00000378302|RCBTB1	ENSG00000136144|ENST00000378302|RCBTB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.3220825195312	2	532.358568	1062.70258	-0.27385	-0.00014579	-3.894	-0.002073	-4.1679	-0.0022188	532.3566136682495	44.772	0.22343	44.772	44.662	44.886	0					6	4	2	0	0	0	0.027462	1	3052	3052		17.365	5.8539	1	75894			59905	4462	49407	49453	65709	65709					0.1737400049310054
VHKGNESL	8	Unmodified	_VHKGNESL_					0	0	0			REV__EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant	REV__EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	442.2348937988281	2	442.235242	882.45593	0.32938	0.00014566	-0.3863	-0.00017083	-0.056917	-2.5171E-05	442.2349881641812	53.455	1.2924	50.641	50.28	51.573	-2.8139					56	25	3	0	0	0	0.50674	1	3635	3635		76.847	5.4687	1	308550	+		59906	18000	49408	49454	65710	65710					0.010000412035765294
VHKGNESL	8	Unmodified	_VHKGNESL_					0	0	0			REV__EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant	REV__EXPH5|p.E1682Dfs*12|1|0.05|ENSG00000110723|chr11:108510461-108510462|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	442.236572265625	2	442.235242	882.45593	-1.0791	-0.00047723	1.0634	0.00047025	-0.015772	-6.9749E-06	442.23567133771746	53.587	2.1485	50.379	49.844	51.992	-3.208					94	41	4	0	0	0	0.45246	2	3278	3278;3315		82.305	11.043	1	1837400	+		59907	18000	49408	49454	65711;65712	65711					0.010000412035765294
VHKINLSVK	9	Unmodified	_VHKINLSVK_					0	0	0			REV__tr|A0A7D6ZIG6|A0A7D6ZIG6_9CLOTLatecompetencedevelopmentComFBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04095PE=4SV=1	REV__tr|A0A7D6ZIG6|A0A7D6ZIG6_9CLOTLatecompetencedevelopmentComFBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04095PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.7723388671875	2	519.326934	1036.63931	-0.66182	-0.0003437	-0.02403	-1.2479E-05	-0.68585	-0.00035618	519.3268439959422	56.088	0.55371	52.794	52.567	53.12	-3.2944					17	10	2	0	0	0	0.027426	1	3553	3553		44.117	9.9443	1	34238	+		59908	32055	49409	49455	65713	65713					0.12246014985248621
VHKKKRPVL	9	Unmodified	_VHKKKRPVL_					0	0	0		ENST00000495775.1_1_2:148683508-148684840:+|nuORF;nc|ENSG00000121989|P27037-2|ACVR2A;ENSG00000121989|ENST00000241416|ACVR2A	ENST00000495775.1_1_2:148683508-148684840:+|nuORF	ENST00000495775.1_1_2:148683508-148684840:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.7701416015625	2	552.871843	1103.72913	2.529	0.0013982	0.23813	0.00013165	2.7671	0.0015299	552.8719820889243	75.503	0.15427	75.503	75.369	75.523	0					5	3	2	0	0	0	0.027462	1	7504	7504		8.2313	1.4958	1	188360			59909	3509	49410	49456	65714	65714					0.1814168938444709
VHKPRVEKE	9	Unmodified	_VHKPRVEKE_					0	0	0			REV__PCNT|p.A2734Qfs*36|1|0.3|ENSG00000160299|chr21:46431663-46431664|-/CAGAA|frameshift_variant	REV__PCNT|p.A2734Qfs*36|1|0.3|ENSG00000160299|chr21:46431663-46431664|-/CAGAA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.7678833007812	2	561.324922	1120.63529	0.75074	0.00042141	-2.6244	-0.0014731	-1.8737	-0.0010517	561.3238309260845	62.625	0.48119	62.625	62.335	62.816	0					24	11	3	0	0	0	0.027462	1	5558	5558		47.657	12.505	1	312720	+		59910	20654	49411	49457	65715	65715					0.07979925491508766
VHKRVLSK	8	Unmodified	_VHKRVLSK_					0	0	0		HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|105|2|anti-sense;HERVH-int_dup4149|chr11:122547028-122555153:+|2.025780284758017|0.230452238566459|3.14|428.0|442|3|anti-sense	HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|105|2|anti-sense	HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|105|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.7918701171875	2	483.813993	965.613434	-0.84954	-0.00041102	-0.27578	-0.00013343	-1.1253	-0.00054445	483.81339985056997	50.006	0.60888	50.006	49.679	50.288	0					25	13	3	0	0	0	0.028476	1	3754	3754		18.324	2.6882	1	433010			59911	14410	49412	49458	65716	65716					0.12925165533602012
VHKTKVPLAMA	11	Unmodified	_VHKTKVPLAMA_					0	0	0		nc|ENSG00000170037|Q8N137-5|CNTROB;ENSG00000170037|ENST00000563694|CNTROB;nc|ENSG00000170037|Q8N137-3|CNTROB;nc|ENSG00000170037|Q8N137-2|CNTROB;ENST00000576723.5_1_17:7843028-7852016:+|nuORF	nc|ENSG00000170037|Q8N137-5|CNTROB	nc|ENSG00000170037|Q8N137-5|CNTROB	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8563232421875	2	597.855001	1193.69545	-0.38237	-0.0002286	2.6587	0.0015895	2.2763	0.0013609	597.8564103488146	145.14	4.0194	143.71	141.51	145.53	-1.4357					229	77	4	0	0	0	0.71498	1	14290	14290		24.519	0.99649	1	217250			59912	7067	49413	49459	65717	65717					0.10634899830392897
VHKVRATLP	9	Unmodified	_VHKVRATLP_					0	0	0			REV__ENST00000373425.7_1_9:129871009-129884789:-|nuORF	REV__ENST00000373425.7_1_9:129871009-129884789:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.8174743652344	2	510.819276	1019.624	1.2675	0.00064746	-3.5143	-0.0017952	-2.2468	-0.0011477	510.81763090631114	145.25	1.1403	145.25	144.94	146.08	0					33	23	2	0	0	0	0.027462	1	17017	17017		37.159	15.457	1	93696	+		59913	25041	49414	49460	65718	65718					0.11497148188038864
VHKYYFVKIL	10	Unmodified	_VHKYYFVKIL_					0	0	0		ENST00000432358.1_1_6:158703326-158703404:+|nuORF	ENST00000432358.1_1_6:158703326-158703404:+|nuORF	ENST00000432358.1_1_6:158703326-158703404:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	437.2559509277344	3	437.26042	1308.75943	-3.525	-0.0015413	-3.4237	-0.0014971	-6.9487	-0.0030384	437.25900137272055	155.13	2.0506	154.9	154.06	156.11	-0.22697					105	58	2	0	0	0	0.818	1	15848	15848		16.717	2.0237	1	24211			59914	11810	49415	49461	65719	65719					0.11740003259001242
VHLCPLFQ	8	Unmodified	_VHLCPLFQ_					0	0	0		nc|ENSG00000269313|Q9H6Y5-3|MAGIX;nc|ENSG00000269313|Q9H6Y5-2|MAGIX;chrX:49162745-49163783|400|13.56|0.3|5.49|+|ENST00000616266|MAGIX,MAGIX	nc|ENSG00000269313|Q9H6Y5-3|MAGIX	nc|ENSG00000269313|Q9H6Y5-3|MAGIX	MULTI-MSMS	OvCa9_classI_Rep2	2	478.75262451171875	2	478.754756	955.494958	-1.4226	-0.0006811	-3.0185	-0.0014451	-4.4411	-0.0021262	478.7532346703681	50.895	2.769	48.101	47.63	50.399	-2.794					110	55	3	0	0	0	0.63104	1	3328	3328		57.453	4.1012	1	1064500			59915	571	49416	49462	65720	65720					0.015430502335789242
VHLHFEIH	8	Unmodified	_VHLHFEIH_					0	0	0		tr|A0A553SL40|A0A553SL40_NIACIM23familymetallopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_19890PE=4SV=1	tr|A0A553SL40|A0A553SL40_NIACIM23familymetallopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_19890PE=4SV=1	tr|A0A553SL40|A0A553SL40_NIACIM23familymetallopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_19890PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.829833984375	2	516.274701	1030.53485	0.16951	8.7511E-05	-1.3707	-0.00070767	-1.2012	-0.00062016	516.2739115134167	133.71	0.93698	132.59	132.27	133.21	-1.1226					42	18	3	0	0	0	0.028476	1	10821	10821		13.775	0	1	60538			59916	33682	49417	49463	65721	65721					0.020803132284981984
VHLKFSAKL	9	Unmodified	_VHLKFSAKL_					0	0	0		nc|ENSG00000007237|O60861-2|GAS7;nc|ENSG00000007237|O60861-1|GAS7;nc|ENSG00000007237|O60861-4|GAS7;ENSG00000007237|ENST00000432992|GAS7	nc|ENSG00000007237|O60861-2|GAS7	nc|ENSG00000007237|O60861-2|GAS7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.7913818359375	2	521.824027	1041.6335	-6.0381	-0.0031508	-3.7846	-0.0019749	-9.8227	-0.0051257	522.3241102144367	158.13	0.20645	156.55	156.49	156.69	-1.5859					9	6	2	0	0	0	0.027462	1	15635	15635		24.519	0	1	13214			59917	897	49418	49464	65722	65722					0.11434916473558587
VHLKIFKMSCS	11	Unmodified	_VHLKIFKMSCS_					0	0	0		chr1:103745227-103750424|224|26.5|0.0|21.34|+|2|TE_info:HERVE_a-int,HERVE_a-int_dup8,ERV1,LTR,donor,-,103742654,103745227|None,AMY1C|43;chr1:103651089-103750424|169|18.98|0.0|20.86|+|2|TE_info:HERVE_a-int,HERVE_a-int_dup2,ERV1,LTR,donor,-,103648516,103651089|None,AMY1C|43;chr1:103745515-103750424|261|25.86|0.0|21.3|+|2|TE_info:HERVE_a-int,HERVE_a-int_dup8,ERV1,LTR,donor,-,103742654,103745515|None,AMY1C|43;chr1:103651377-103750424|201|17.3|0.0|20.72|+|2|TE_info:HERVE_a-int,HERVE_a-int_dup2,ERV1,LTR,donor,-,103648516,103651377|None,AMY1C|43;chr1:103651250-103750424|173|10.4|0.0|19.99|+|0|TE_info:HERVE_a-int,HERVE_a-int_dup2,ERV1,LTR,donor,-,103648516,103651250|None,AMY1C|43	chr1:103745227-103750424|224|26.5|0.0|21.34|+|2|TE_info:HERVE_a-int,HERVE_a-int_dup8,ERV1,LTR,donor,-,103742654,103745227|None,AMY1C|43	chr1:103745227-103750424|224|26.5|0.0|21.34|+|2|TE_info:HERVE_a-int,HERVE_a-int_dup8,ERV1,LTR,donor,-,103742654,103745227|None,AMY1C|43	MULTI-MSMS	OvCa99_classI_Rep5	1	646.8488159179688	2	646.846319	1291.67808	1.8867	0.0012204	-0.53563	-0.00034647	1.351	0.00087391	646.8459676358829	78.778	0.81128	78.778	78.54	79.352	0					58	19	4	0	0	0	0.29709	1	8023	8023		60.118	0	1	4237200			59918	236	49419	49465	65723	65723					0.04391236233095697
VHLMNALLLI	10	Unmodified	_VHLMNALLLI_					0	0	0			REV__tr|A0A553SGF7|A0A553SGF7_NIACIThiaminephosphatesynthaseOS=NialliacirculansOX=1397GN=CEQ21_10790PE=4SV=1	REV__tr|A0A553SGF7|A0A553SGF7_NIACIThiaminephosphatesynthaseOS=NialliacirculansOX=1397GN=CEQ21_10790PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	568.84619140625	2	568.846645	1135.67874	1.1361	0.00064626	-1.1496	-0.00065395	-0.013528	-7.6955E-06	568.845786397459	122.98	2.0826	121.95	121	123.08	-1.034					125	39	4	0	0	0	0.65434	1	9515	9515		35.618	5.3006	1	474050	+		59919	29694	49420	49466	65724	65724					0.11632398944448141
VHLRRKDF	8	Unmodified	_VHLRRKDF_					0	0	0		nc|ENSG00000186866|Q9Y2G5-2|POFUT2;nc|ENSG00000186866|Q9Y2G5-1|POFUT2;ENSG00000186866|ENST00000349485|POFUT2	nc|ENSG00000186866|Q9Y2G5-2|POFUT2	nc|ENSG00000186866|Q9Y2G5-2|POFUT2	MULTI-MSMS	OvCa9_classI_Rep2	2	535.813720703125	2	535.814525	1069.6145	-0.76164	-0.0004081	1.2462	0.00066774	0.48458	0.00025964	535.8146268259228	44.821	1.2946	42.112	41.653	42.947	-2.7097					61	25	4	0	0	0	0.68312	1	2550	2550		46.766	0.81448	1	428190			59920	8368	49421	49467	65725	65725					0.08247379902491048
VHLSGRPIL	9	Unmodified	_VHLSGRPIL_					0	0	0			REV__ENST00000488630.1_1_9:95872816-95873383:+|nuORF	REV__ENST00000488630.1_1_9:95872816-95873383:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.3049621582031	2	496.306001	990.597449	-4.4709	-0.0022189	0.17198	8.5355E-05	-4.2989	-0.0021336	496.30601677718755	154.78	0.74774	153.33	153.16	153.9	-1.4516					30	18	2	0	0	0	0.69895	1	15342	15342		18.324	1.8513	1	66174	+		59921	26625	49422	49468	65726	65726					0.10177459296698999
VHLTFSGKD	9	Unmodified	_VHLTFSGKD_					0	0	0		tr|A0A7D6VXA7|A0A7D6VXA7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12095PE=4SV=1	tr|A0A7D6VXA7|A0A7D6VXA7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12095PE=4SV=1	tr|A0A7D6VXA7|A0A7D6VXA7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12095PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	502.26568603515625	2	502.263999	1002.51345	1.0064	0.00050549	0.91494	0.00045954	1.9214	0.00096503	502.2644452882271	155.8	1.52	155.8	155.43	156.95	0					46	29	2	0	0	0	0.50149	1	18293	18293		42.396	0	1	31097			59922	35270	49423	49469	65727	65727					0.012288834091464196
VHLTSSELT	9	Unmodified	_VHLTSSELT_					0	0	0			REV__ENSG00000122188|ENST00000442561|LAX1	REV__ENSG00000122188|ENST00000442561|LAX1	MULTI-MSMS	OvCa9_classI_Rep3	3	493.7611083984375	2	493.761289	985.508025	-0.567	-0.00027996	0.17689	8.7342E-05	-0.39011	-0.00019262	493.7612320121243	133.32	1.1284	132.19	131.88	133.01	-1.1249					55	22	3	0	0	0	0.55588	1	10696	10696		37.159	1.9584	1	214690	+		59923	18581	49424	49470	65728	65728					0.014691598266608707
VHLYDAAR	8	Unmodified	_VHLYDAAR_					0	0	0			REV__nc|ENSG00000005381|P05164-2|MPO	REV__nc|ENSG00000005381|P05164-2|MPO	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.7665710449219	2	472.751059	943.487565	0.36444	0.00017229	2.7558	0.0013028	3.1202	0.0014751	472.75154578261544	57.864	0.1663	57.864	57.775	57.941	0					5	3	2	0	0	0	0.028476	1	4892	4892		33.516	0	1	59952	+		59924	16400	49425	49471	65729	65729					0.013560339575064972
VHMFNIIAKK	10	Unmodified	_VHMFNIIAKK_					0	0	0		tr|A0A553SRE9|A0A553SRE9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00870PE=4SV=1	tr|A0A553SRE9|A0A553SRE9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00870PE=4SV=1	tr|A0A553SRE9|A0A553SRE9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00870PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	601.3468017578125	2	600.849719	1199.68488	0.26672	0.00016026	2.6575	0.0015968	2.9243	0.001757	600.8507071323504	32.048	0.34746	32.048	31.857	32.204	0					12	6	3	0	0	0	0.027117	1	1351	1351		10.866	4.5529	1	46916			59925	34256	49426	49472	65730	65730					0.09302917175955372
VHMVKQAQMEV	11	Unmodified	_VHMVKQAQMEV_					0	0	0			REV__nc|ENSG00000134242|Q9Y2R2-6|PTPN22	REV__nc|ENSG00000134242|Q9Y2R2-6|PTPN22	MULTI-SECPEP	OvCa9_classI_Rep4_	4	433.2491760253906	3	433.889781	1298.64751	0.3387	0.00014696	-2.9248	-0.001269	-2.5861	-0.0011221	433.888251112421	52.136	1.3546	48.928	48.539	49.893	-3.208					65	26	4	0	0	0	0.025378	1	3087	3087		23.378	0	1	171500	+		59926	19183	49427	49473	65731	65731					0.010134578480347045
VHPDLSLLVL	10	Unmodified	_VHPDLSLLVL_					0	0	0			REV__ENST00000528699.1_1_11:65417824-65418183:+|nuORF	REV__ENST00000528699.1_1_11:65417824-65418183:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	553.33203125	2	553.334424	1104.6543	-2.8766	-0.0015917	-0.88706	-0.00049084	-3.7637	-0.0020826	553.3337794849177	152.41	1.17	152.18	151.83	153	-0.22696					55	23	3	0	0	0	0.74484	1	15489	15489		25.45	2.4077	1	86016	+		59927	27174	49428	49474	65732	65732					0.10615462062582992
VHPFRLLF	8	Unmodified	_VHPFRLLF_					0	0	0			REV__NOD1|p.Q907Rfs*20|1|0.04|ENSG00000106100|chr7:30429444-30429444|G/-|frameshift_variant;REV__NOD1|p.F591Dfs*24|1|0.19|ENSG00000106100|chr7:30451646-30451647|-/TC|frameshift_variant	REV__NOD1|p.Q907Rfs*20|1|0.04|ENSG00000106100|chr7:30429444-30429444|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.7893676757812	2	514.805637	1027.59672	-0.2366	-0.0001218	-0.0741	-3.8147E-05	-0.3107	-0.00015995	515.3057484867034	39.22	0.89374	36.294	35.997	36.891	-2.9264					33	17	3	0	0	0	0.028476	1	1581	1581		20.482	8.275	1	65091	+		59928	17778;29257	49429	49475	65733	65733					0.08402664647655911
VHPHPAGR	8	Unmodified	_VHPHPAGR_					0	0	0		nc|ENSG00000090316|Q7L5Y9-5|MAEA	nc|ENSG00000090316|Q7L5Y9-5|MAEA	nc|ENSG00000090316|Q7L5Y9-5|MAEA	MULTI-SECPEP	OvCa99_classI_Rep5	1	435.7196350097656	2	435.738286	869.462019	0.98438	0.00042893	-1.4902	-0.00064935	-0.50585	-0.00022042	435.73722724918207	57.812	0.50368	57.812	57.566	58.069	0					38	11	5	0	0	0	0.028476	1	4876	4876		40.573	0	1	333140			59929	14915	49430	49476	65734	65734					0.022066042257506524
VHPIQSPQNR	10	Unmodified	_VHPIQSPQNR_					0	0	0		ENST00000463795.5_1_22:30682689-30685486:-|nuORF;ENSG00000239282|ENST00000407689|CASTOR1;ENST00000497605.6_1_22:30682689-30683547:-|nuORF;ENST00000418047.5_3_22:30682067-30689721:-|nuORF;ENST00000434987.5_3_22:30681611-30689737:-|nuORF;ENST00000447976.1_3_22:30681611-30689721:-|nuORF;ENST00000330168.9_3_22:30681611-30688778:-|nuORF	ENST00000463795.5_1_22:30682689-30685486:-|nuORF	ENST00000463795.5_1_22:30682689-30685486:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	588.3187866210938	2	588.317628	1174.6207	-0.14986	-8.8168E-05	-0.9234	-0.00054325	-1.0733	-0.00063142	588.3171667010001	47.453	2.2552	44.346	43.978	46.233	-3.1077					150	43	5	0	0	0	0.72319	1	2644	2644		27.882	2.3082	1	4526700			59930	9324	49431	49477	65735	65735					0.04037853343356801
VHPQQERV	8	Unmodified	_VHPQQERV_					0	0	0			REV__ENSG00000100441|ENST00000553935|KHNYN	REV__ENSG00000100441|ENST00000553935|KHNYN	MULTI-MSMS	OvCa99_classI_Rep5	1	496.76708984375	2	496.76724	991.519927	0.028532	1.4174E-05	0.059437	2.9526E-05	0.087969	4.37E-05	496.76715619515596	20.95	0.28508	20.95	20.776	21.061	0					10	5	3	0	0	0	0.74394	1	82	82		13.775	0	1	71280	+		59931	17418	49432	49478	65736	65736					0.02382821360527032
VHPRGIFV	8	Unmodified	_VHPRGIFV_					0	0	0			REV__ENSG00000152127|ENST00000281923|MGAT5	REV__ENSG00000152127|ENST00000281923|MGAT5	MULTI-MSMS	OvCa99_classI_Rep5	1	462.7754211425781	2	462.774337	923.534121	-1.0369	-0.00047986	0.66975	0.00030994	-0.36718	-0.00016992	462.77449259712506	63.965	1.7789	63.965	63.648	65.426	0					103	43	3	0	0	0	0.59103	1	5779	5779		65.897	11.133	1	4874800	+		59932	20271	49433	49479	65737	65737					0.0692951857947719
VHQGHQEWGD	10	Unmodified	_VHQGHQEWGD_					0	0	0			REV__ENST00000604727.1_1_1:44570005-44570080:-|nuORF	REV__ENST00000604727.1_1_1:44570005-44570080:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	595.8527221679688	2	596.760143	1191.50573	0.49975	0.00029823	-1.117	-0.00066656	-0.61722	-0.00036833	596.759498314586	88.3	1.4836	86.169	85.803	87.287	-2.1309					59	29	4	0	0	0	0.026849	1	5324	5324		25.574	0	1	97008	+		59933	26321	49434	49480	65738	65738					-0.08235875858440522
VHQGHQEWGD	10	Unmodified	_VHQGHQEWGD_					0	0	0			REV__ENST00000604727.1_1_1:44570005-44570080:-|nuORF	REV__ENST00000604727.1_1_1:44570005-44570080:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	596.760143	1191.50573	0.96581	0.00057636	-1.772	-0.0010574	-0.80615	-0.00048108	596.758804588655	87.573	1.2798	86.142	85.791	87.071	-1.4311	-0.032382	-0.00067381	NaN	25.574	58	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36565	+		59934	26321	49434	49480							-0.08235875858440522
VHQGHQEWGD	10	Unmodified	_VHQGHQEWGD_					0	0	0			REV__ENST00000604727.1_1_1:44570005-44570080:-|nuORF	REV__ENST00000604727.1_1_1:44570005-44570080:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	596.760143	1191.50573	-0.5387	-0.00032147	0.0068864	4.1095E-06	-0.53181	-0.00031736	596.7598495425764	88.815	1.1378	86.212	85.984	87.122	-2.6027	0.037724	0.0014493	NaN	25.574	39	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118440	+		59935	26321	49434	49480							-0.08235875858440522
VHQIKRKAQP	10	Unmodified	_VHQIKRKAQP_					0	0	0			REV__nc|nan|Q9BVC5-2|C2orf49	REV__nc|nan|Q9BVC5-2|C2orf49	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.8792724609375	3	402.247285	1203.72002	0.92603	0.00037249	-0.90218	-0.0003629	0.02385	9.5935E-06	402.246824989132	53.178	0.65209	53.178	52.956	53.609	0					41	14	4	0	0	0	0.026975	1	4267	4267		25.126	4.2888	1	1474500	+		59936	19344	49435	49481	65739	65739					0.12631296028121142
VHQNRFIR	8	Unmodified	_VHQNRFIR_					0	0	0		nc|ENSG00000146112|Q6NYC8-3|PPP1R18;ENSG00000146112|ENST00000274853|PPP1R18;nc|ENSG00000146112|Q6NYC8-2|PPP1R18	nc|ENSG00000146112|Q6NYC8-3|PPP1R18	nc|ENSG00000146112|Q6NYC8-3|PPP1R18	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.8211059570312	2	535.304324	1068.5941	0.08352	4.4708E-05	-3.3807	-0.0018097	-3.2971	-0.001765	535.3024910952455	57.147	0.43336	57.147	56.875	57.309	0					12	9	2	0	0	0	0.028476	1	4805	4805		13.775	0	1	92845			59937	5267	49436	49482	65740	65740					0.06254209242683828
VHQSYPHH	8	Unmodified	_VHQSYPHH_					0	0	0		nc|ENSG00000168488|Q8WWM7-8|ATXN2L;nc|ENSG00000168488|Q8WWM7-5|ATXN2L;nc|ENSG00000168488|Q8WWM7-4|ATXN2L;nc|ENSG00000168488|Q8WWM7-9|ATXN2L;nc|ENSG00000168488|Q8WWM7-2|ATXN2L;ENSG00000168488|ENST00000336783|ATXN2L;nc|ENSG00000168488|Q8WWM7-3|ATXN2L;nc|ENSG00000168488|Q8WWM7-6|ATXN2L;ENST00000563314.5_1_16:28834580-28846939:+|nuORF	nc|ENSG00000168488|Q8WWM7-8|ATXN2L	nc|ENSG00000168488|Q8WWM7-8|ATXN2L	MULTI-MSMS	OvCa99_classI_Rep5	1	502.7427978515625	2	502.738483	1003.46241	1.0042	0.00050483	4.2955	0.0021595	5.2996	0.0026643	502.7401406606946	139.17	0.77559	139.17	138.83	139.61	0					26	15	2	0	0	0	0.69415	1	16259	16259		44.531	11.015	1	84809			59938	15167	49437	49483	65741	65741					-0.03918020845048886
VHREIRVP	8	Unmodified	_VHREIRVP_					0	0	0		tr|A0A553SJT0|A0A553SJT0_NIACIAminopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_17565PE=3SV=1	tr|A0A553SJT0|A0A553SJT0_NIACIAminopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_17565PE=3SV=1	tr|A0A553SJT0|A0A553SJT0_NIACIAminopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_17565PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.78076171875	2	503.30125	1004.58795	-2.162	-0.0010881	-2.804	-0.0014113	-4.966	-0.0024994	503.2997129299142	88.611	1.3975	86.008	85.327	86.725	-2.6027					60	27	3	0	0	0	0.028476	1	7579	7579		38.806	19.446	1	52991			59939	33540	49438	49484	65742	65742					0.08583691011187966
VHRISKLP	8	Unmodified	_VHRISKLP_					0	0	0			REV__SPRED1|p.C418Nfs*10|1|0.04|ENSG00000166068|chr15:38351580-38351581|-/AACGTTCTCGC|frameshift_variant	REV__SPRED1|p.C418Nfs*10|1|0.04|ENSG00000166068|chr15:38351580-38351581|-/AACGTTCTCGC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	475.2995910644531	2	475.300719	948.586885	0.83712	0.00039788	-1.305	-0.00062029	-0.46792	-0.0002224	475.30006565058653	65.392	2.5484	62.696	62.21	64.758	-2.6958					145	50	5	0	0	0	0.73626	1	5062	5062		33.516	3.0119	1	2264200	+		59940	21153	49439	49485	65743	65743					0.11053476642268834
VHRIVFPPK	9	Unmodified	_VHRIVFPPK_					0	0	0			REV__ENST00000463938.5_1_1:48864995-48878812:-|nuORF	REV__ENST00000463938.5_1_1:48864995-48878812:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.2863159179688	2	546.837468	1091.66038	-0.48123	-0.00026316	-3.4905	-0.0019087	-3.9717	-0.0021719	546.8354871258746	55.936	0.93896	55.936	55.599	56.538	0					53	22	4	0	0	0	0.027462	1	4672	4672		29.15	6.1071	1	2463800	+		59941	19052	49440	49486	65744	65744					0.11822025084734378
VHRLGRRF	8	Unmodified	_VHRLGRRF_					0	0	0			REV__nc|ENSG00000112029|Q9UKT4-2|FBXO5	REV__nc|ENSG00000112029|Q9UKT4-2|FBXO5	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.300537109375	2	520.814859	1039.61517	-0.7635	-0.00039764	1.3588	0.0007077	0.59534	0.00031006	521.3166068675639	50.043	0.4979	47.249	47.033	47.531	-2.794					12	9	2	0	0	0	0.028476	1	3215	3215		28.254	6.5519	1	11438	+		59942	18072	49441	49487	65745	65745					0.09694219342213728
VHRLLGLVI	9	Unmodified	_VHRLLGLVI_					0	0	0		chr14:94062621-94065779|133|19.53|0.06|8.3|-|1|TE_info:L1PB1,L1PB1_dup11175,L1,LINE,donor,+,94065779,94071367|DDX24,None|90	chr14:94062621-94065779|133|19.53|0.06|8.3|-|1|TE_info:L1PB1,L1PB1_dup11175,L1,LINE,donor,+,94065779,94071367|DDX24,None|90	chr14:94062621-94065779|133|19.53|0.06|8.3|-|1|TE_info:L1PB1,L1PB1_dup11175,L1,LINE,donor,+,94065779,94071367|DDX24,None|90	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.76422119140625	2	510.339844	1018.66514	0.52102	0.0002659	-0.40553	-0.00020696	0.11549	5.8938E-05	510.33944435364	33.148	0.39817	30.452	30.302	30.7	-2.6954					9	7	2	0	0	0	0.027462	1	869	869		12.959	5.2689	1	12453			59943	352	49442	49488	65746	65746					0.15654909227498592
VHRLWFELTE	10	Unmodified	_VHRLWFELTE_					0	0	0			REV__nc|ENSG00000164169|Q6P2P2-2|PRMT9	REV__nc|ENSG00000164169|Q6P2P2-2|PRMT9	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.9324951171875	3	443.903183	1328.68772	0.31248	0.00013871	2.5597	0.0011363	2.8722	0.001275	443.9042856707851	28.814	0.19956	28.814	28.688	28.888	0					5	3	2	0	0	0	0.027142	1	970	970		20.837	0	1	26250	+		59944	20953	49443	49489	65747	65747					0.036524638344417326
VHSELDPLL	9	Unmodified	_VHSELDPLL_					0	0	0			REV__nc|ENSG00000243708|P0C869-8|PLA2G4B	REV__nc|ENSG00000243708|P0C869-8|PLA2G4B	MULTI-MSMS	OvCa99_classI_Rep5	1	511.7802734375	2	511.779482	1021.54441	0.4784	0.00024484	-3.4463	-0.0017638	-2.9679	-0.0015189	511.7783161058636	161.64	0.61235	161.64	161.41	162.02	0					18	11	2	0	0	0	0.53957	1	18957	18957		38.806	0	1	40489	+		59945	29161	49444	49490	65748	65748					0.034500367233818
VHSEYILP	8	Unmodified	_VHSEYILP_					0	0	0			REV__ENST00000467434.5_1_9:115142409-115167948:+|nuORF	REV__ENST00000467434.5_1_9:115142409-115167948:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.7987060546875	2	479.255643	956.496732	-0.45103	-0.00021616	1.8596	0.00089121	1.4085	0.00067505	479.2564253079434	59.772	1.0255	59.772	59.533	60.559	0					42	25	2	0	0	0	0.028476	1	5290	5290		28.254	0	1	2875400	+		59946	25380	49445	49491	65749	65749					0.016743825231969822
VHSGGSHTHS	10	Unmodified	_VHSGGSHTHS_					0	0	0		FLG2|p.Q1698Dfs*22|1|0.02|ENSG00000143520|chr1:152352694-152352695|-/TCCATGAGTAGTTCCGTGTC|frameshift_variant;FLG2|p.I2147Tfs*10|1|0.05|ENSG00000143520|chr1:152351346-152351347|-/G|frameshift_variant;ENSG00000143520|ENST00000388718|FLG2;CON__Q5D862	FLG2|p.Q1698Dfs*22|1|0.02|ENSG00000143520|chr1:152352694-152352695|-/TCCATGAGTAGTTCCGTGTC|frameshift_variant	FLG2|p.Q1698Dfs*22|1|0.02|ENSG00000143520|chr1:152352694-152352695|-/TCCATGAGTAGTTCCGTGTC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.7596130371094	2	503.228479	1004.44241	-0.63537	-0.00031974	0.49189	0.00024753	-0.14348	-7.2204E-05	503.2288174360839	33.823	0.14434	33.823	33.728	33.873	0					4	2	2	0	0	0	0.027056	1	1572	1572		14.865	0	1	5842.4		+	59947	652	49446	49492	65750	65750					-0.05963816575660985
VHSHIWVSQ	9	Unmodified	_VHSHIWVSQ_					0	0	0			REV__nc|ENSG00000168016|O15050|TRANK1	REV__nc|ENSG00000168016|O15050|TRANK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.8182373046875	2	546.78289	1091.55123	0.44011	0.00024065	-3.3402	-0.0018264	-2.9001	-0.0015857	546.7810196792058	37.617	0.44925	34.725	34.492	34.941	-2.8925					16	8	3	0	0	0	0.027462	1	1371	1371		19.104	0	1	22875	+		59948	21335	49447	49493	65751	65751					0.009113943946204017
VHSNLTKKRVT	11	Unmodified	_VHSNLTKKRVT_					0	0	0		ENSG00000171517|ENST00000370611|LPAR3;LPAR3|p.A175Pfs*61|1|0.4|ENSG00000171517|chr1:84865598-84865598|C/-|frameshift_variant	ENSG00000171517|ENST00000370611|LPAR3	ENSG00000171517|ENST00000370611|LPAR3	MSMS	OvCa9_classI_Rep2	2	641.8803100585938	2	641.883136	1281.75172	NaN	NaN	NaN	NaN	NaN	NaN	NaN	156.89	1	156.67	156.17	157.17	-0.22696								0	0	0	0.19474	1	15963	15963		8.2351	0.43057	1				59949	7210	49448	49494	65752	65752					0.12211243991373522
VHSQNGIVL	9	Unmodified	_VHSQNGIVL_					0	0	0		ATF7IP|p.Q1172H|1|0.08|ENSG00000171681|chr12:14497776-14497776|G/T|missense_variant	ATF7IP|p.Q1172H|1|0.08|ENSG00000171681|chr12:14497776-14497776|G/T|missense_variant	ATF7IP|p.Q1172H|1|0.08|ENSG00000171681|chr12:14497776-14497776|G/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	483.7727355957031	2	483.771991	965.529429	0.72662	0.00035152	-0.73157	-0.00035391	-0.0049556	-2.3974E-06	483.7715678036083	67.119	0.74966	67.119	66.816	67.566	0					39	18	3	0	0	0	0.35444	1	6258	6258		56.721	6.6965	1	2793100			59950	125	49449	49495	65753	65753					0.04528589646054115
VHSRGGLIS	9	Unmodified	_VHSRGGLIS_					0	0	0		ENSG00000149260|ENST00000648180|CAPN5	ENSG00000149260|ENST00000648180|CAPN5	ENSG00000149260|ENST00000648180|CAPN5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.7933044433594	2	463.264333	924.514114	-0.30326	-0.00014049	-1.5403	-0.00071358	-1.8436	-0.00085407	463.2639301273173	56.892	1.7242	53.547	52.413	54.138	-3.3449					40	33	2	0	0	0	0.027462	1	3544	3544		29.15	4.9468	1	35088			59951	5449	49450	49496	65754	65754					0.04883722848865091
VHSWHWTI	8	Unmodified	_VHSWHWTI_					0	0	0		ENST00000382103.6_1_4:25158569-25160637:-|nuORF;nc|ENSG00000109618|Q9HD40-2|SEPSECS	ENST00000382103.6_1_4:25158569-25160637:-|nuORF	ENST00000382103.6_1_4:25158569-25160637:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.828369140625	2	533.266876	1064.5192	1.3873	0.00073978	-4.4824	-0.0023903	-3.0951	-0.0016505	533.2644709268801	83.195	0.4706	83.195	82.906	83.377	0					17	10	2	0	0	0	0.028476	1	8647	8647		26.796	8.4717	1	218820			59952	11176	49451	49497	65755	65755					-0.010479732885414705
VHSWLTRGHG	10	Unmodified	_VHSWLTRGHG_					0	0	0			REV__ENST00000248076.3_1_19:17000717-17000960:+|nuORF	REV__ENST00000248076.3_1_19:17000717-17000960:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.8508911132812	2	575.299239	1148.58392	-1.0674	-0.00061408	-2.5271	-0.0014538	-3.5945	-0.0020679	575.2951278123795	89.027	0.63055	86.896	86.607	87.237	-2.1309					22	12	3	0	0	0	0.026915	1	5489	5489		44.117	8.4985	1	30002	+		59953	23843	49452	49498	65756	65756					0.015576015174701752
VHSYRIAPDI	10	Unmodified	_VHSYRIAPDI_					0	0	0		tr|A0A553SKY3|A0A553SKY3_NIACIGlycerophosphodiesterphosphodiesteraseOS=NialliacirculansOX=1397GN=CEQ21_19585PE=4SV=1	tr|A0A553SKY3|A0A553SKY3_NIACIGlycerophosphodiesterphosphodiesteraseOS=NialliacirculansOX=1397GN=CEQ21_19585PE=4SV=1	tr|A0A553SKY3|A0A553SKY3_NIACIGlycerophosphodiesterphosphodiesteraseOS=NialliacirculansOX=1397GN=CEQ21_19585PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.31689453125	2	585.81693	1169.61931	1.4412	0.00084426	-1.0301	-0.00060344	0.41108	0.00024082	586.3170373551154	138.28	0.86906	138.28	137.82	138.69	0					48	18	4	0	0	0	0.027028	1	16116	16116		31.53	16.665	1	161440			59954	33666	49453	49499	65757	65757					0.04128219254630494
VHTGELGAEL	10	Unmodified	_VHTGELGAEL_					0	0	0			REV__ENST00000438380.1_1_9:127533958-127535075:+|nuORF	REV__ENST00000438380.1_1_9:127533958-127535075:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.2677001953125	2	513.266739	1024.51892	0.9461	0.0004856	-0.4889	-0.00025094	0.4572	0.00023466	513.266364363024	84.6	1.8418	81.937	81.685	83.526	-2.6629					65	37	2	0	0	0	0.52321	1	7084	7084		51.335	1.8939	1	227870	+		59955	25810	49454	49500	65758	65758					0.007645622009476938
VHTGELGAEL	10	Unmodified	_VHTGELGAEL_					0	0	0			REV__ENST00000438380.1_1_9:127533958-127535075:+|nuORF	REV__ENST00000438380.1_1_9:127533958-127535075:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	513.266739	1024.51892	-0.53756	-0.00027591	0.73928	0.00037945	0.20172	0.00010353	513.2669554575934	83.549	2.0446	81.951	81.55	83.594	-1.5988	0.056946	0.00031748	NaN	51.335	81	40	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125050	+		59956	25810	49454	49500							0.007645622009476938
VHTGELGAEL	10	Unmodified	_VHTGELGAEL_					0	0	0			REV__ENST00000438380.1_1_9:127533958-127535075:+|nuORF	REV__ENST00000438380.1_1_9:127533958-127535075:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	513.266739	1024.51892	-0.78417	-0.00040249	1.6246	0.00083384	0.8404	0.00043135	513.2674565959933	84.054	0.68769	81.793	81.522	82.21	-2.261	-0.10044	0.0012263	NaN	51.335	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	228200	+		59957	25810	49454	49500							0.007645622009476938
VHTILTADLVI	11	Unmodified	_VHTILTADLVI_					0	0	0		ENSG00000069431|ENST00000261200|ABCC9	ENSG00000069431|ENST00000261200|ABCC9	ENSG00000069431|ENST00000261200|ABCC9	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8564453125	2	597.858264	1193.70197	-3.1766	-0.0018991	0.037639	2.2503E-05	-3.1389	-0.0018766	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.69081	2	15044	15044;15105		32.812	0.94304	1	436470			59958	1409	49455	49501	65759;65760	65759					0.11287116262747077
VHTILTADLVI	11	Unmodified	_VHTILTADLVI_					0	0	0		ENSG00000069431|ENST00000261200|ABCC9	ENSG00000069431|ENST00000261200|ABCC9	ENSG00000069431|ENST00000261200|ABCC9	MULTI-MSMS	OvCa9_classI_Rep3	3	597.856201171875	2	597.858264	1193.70197	-2.7036	-0.0016164	-0.53743	-0.00032131	-3.241	-0.0019377	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.58572	1	12643	12643		45.972	18.09	1	591030			59959	1409	49455	49501	65761	65761					0.11287116262747077
VHTLRQTS	8	Unmodified	_VHTLRQTS_					0	0	0		nc|ENSG00000009950|Q9NP71-4|MLXIPL;nc|ENSG00000009950|Q9NP71-2|MLXIPL;nc|ENSG00000009950|Q9NP71-3|MLXIPL;ENSG00000009950|ENST00000313375|MLXIPL;nc|ENSG00000009950|Q9NP71-6|MLXIPL	nc|ENSG00000009950|Q9NP71-4|MLXIPL	nc|ENSG00000009950|Q9NP71-4|MLXIPL	MULTI-MSMS	OvCa99_classI_Rep5	1	471.2666015625	2	471.261791	940.509028	2.507	0.0011814	3.6719	0.0017304	6.1789	0.0029119	471.26321950268084	76.118	0.49139	76.118	75.874	76.365	0					22	11	3	0	0	0	0.7043	1	7619	7619		42.474	0	1	814530			59960	934	49456	49502	65762	65762					0.03639418986244891
VHVFLSAH	8	Unmodified	_VHVFLSAH_					0	0	0			REV__nc|ENSG00000154822|Q9UPR0-2|PLCL2	REV__nc|ENSG00000154822|Q9UPR0-2|PLCL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	455.280517578125	2	455.250695	908.486836	2.296	0.0010452	0.34303	0.00015616	2.639	0.0012014	455.2511068986731	76.823	0.6132	76.823	76.639	77.252	0					27	14	3	0	0	0	0.028476	1	7724	7724		29.842	9.3597	1	671300	+		59961	20400	49457	49503	65763	65763					0.028932393084801333
VHVGKRAS	8	Unmodified	_VHVGKRAS_					0	0	0		tr|A0A7D7A2Y7|A0A7D7A2Y7_9CLOTLargeribosomalsubunitproteinuL23OS=ClostridiumintestinaleOX=36845GN=rplWPE=3SV=1	tr|A0A7D7A2Y7|A0A7D7A2Y7_9CLOTLargeribosomalsubunitproteinuL23OS=ClostridiumintestinaleOX=36845GN=rplWPE=3SV=1	tr|A0A7D7A2Y7|A0A7D7A2Y7_9CLOTLargeribosomalsubunitproteinuL23OS=ClostridiumintestinaleOX=36845GN=rplWPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	427.91021728515625	2	427.253769	852.492984	1.0503	0.00044875	-0.36255	-0.0001549	0.68776	0.00029385	427.25346781209646	37.732	0.79708	34.839	34.541	35.339	-2.8925					37	15	3	0	0	0	0.028476	1	1389	1389		8.2313	0	1	80455			59962	36096	49458	49504	65764	65764					0.0608375753998871
VHVLALLSGCA	11	Unmodified	_VHVLALLSGCA_					0	0	0			REV__ENSG00000221836|ENST00000641693|OR2A5	REV__ENSG00000221836|ENST00000641693|OR2A5	MULTI-MSMS	OvCa9_classI_Rep3	3	541.805908203125	2	541.804977	1081.5954	0.70177	0.00038022	-1.2555	-0.00068022	-0.5537	-0.0003	541.8042248143938	79.731	1.1616	77.391	76.902	78.063	-2.3399					51	22	4	0	0	0	0.52685	1	4329	4329		51.335	15.717	1	706290	+		59963	23341	49459	49505	65765	65765					0.0578666249662092
VHVQLPTI	8	Unmodified	_VHVQLPTI_					0	0	0			REV__PAN2|p.L519Afs*9|1|0.31|ENSG00000135473|chr12:56325049-56325053|TCTAA/-|frameshift_variant	REV__PAN2|p.L519Afs*9|1|0.31|ENSG00000135473|chr12:56325049-56325053|TCTAA/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	453.75738525390625	2	453.774003	905.533452	0.31777	0.0001442	0.64883	0.00029442	0.9666	0.00043862	453.77414893096665	73.579	0.31313	73.579	73.479	73.792	0					13	7	2	0	0	0	0.028476	1	7250	7250		7.6903	0	1	223990	+		59964	19291	49460	49506	65766	65766					0.076906791397505
VHWENLVYI	9	Unmodified	_VHWENLVYI_					0	0	0		ENSG00000180219|ENST00000324341|GARIN6	ENSG00000180219|ENST00000324341|GARIN6	ENSG00000180219|ENST00000324341|GARIN6	MULTI-MSMS	OvCa9_classI_Rep3	3	586.8027954101562	2	586.808574	1171.60259	-8.2813	-0.0048596	-0.94955	-0.0005572	-9.2309	-0.0054168	586.8077830487384	159.82	3.6388	158.49	157.91	161.55	-1.3316					146	73	3	0	0	0	0.6959	1	13938	13938		19.36	3.7182	1	151840			59965	7860	49461	49507	65767	65767					0.02365718368673697
VHYEAFSHM	9	Unmodified	_VHYEAFSHM_					0	0	0			REV__KLHL23|p.F148Y|1|0.05|ENSG00000213160|chr2:169735457-169735457|T/A|missense_variant	REV__KLHL23|p.F148Y|1|0.05|ENSG00000213160|chr2:169735457-169735457|T/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	560.7454223632812	2	560.747659	1119.48076	0.041098	2.3046E-05	-4.0182	-0.0022532	-3.9771	-0.0022301	560.745216104529	32.314	0.89012	29.605	29.382	30.272	-2.7097					27	17	2	0	0	0	0.61208	1	1062	1062		30.504	0	1	71572	+		59966	28340	49462	49508	65768	65768					-0.07419646985363215
VIAAVIKN	8	Unmodified	_VIAAVIKN_					0	0	0		ENSG00000171517|ENST00000370611|LPAR3;LPAR3|p.A175Pfs*61|1|0.4|ENSG00000171517|chr1:84865598-84865598|C/-|frameshift_variant	ENSG00000171517|ENST00000370611|LPAR3	ENSG00000171517|ENST00000370611|LPAR3	MULTI-MSMS	OvCa99_classI_Rep5	1	414.2740783691406	2	414.271096	826.527639	3.1726	0.0013143	3.307	0.00137	6.4796	0.0026843	414.2721788816035	120.97	0.46092	120.97	120.78	121.25	0					15	10	2	0	0	0	0.73288	1	13918	13918		35.201	1.6851	1	105390			59967	7210	49463	49509	65769	65769					0.10743580628081872
VIAECFEE	8	Unmodified	_VIAECFEE_					0	0	0		tr|A0A7D6ZRE2|A0A7D6ZRE2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12335PE=4SV=1	tr|A0A7D6ZRE2|A0A7D6ZRE2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12335PE=4SV=1	tr|A0A7D6ZRE2|A0A7D6ZRE2_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12335PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.2110595703125	2	470.210043	938.405534	0.76717	0.00036073	1.4222	0.00066872	2.1893	0.0010294	470.21060850617636	112.48	1.7553	110.97	110.42	112.18	-1.5111					84	34	4	0	0	0	0.64377	1	10394	10394		54.765	0	1	831100			59968	35713	49464	49510	65770	65770					-0.06613249236443153
VIAEILRGV	9	Unmodified	_VIAEILRGV_					0	0	0		ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	OvCa99_classI_Rep5	1	485.3096008300781	2	485.30821	968.601866	2.3265	0.0011291	0.26107	0.0001267	2.5876	0.0012558	485.30822394326566	106.41	1.0467	106.41	106.1	107.14	0					43	23	3	0	0	0	0.025955	2	11977	11977;12002		139.97	43.78	1	1089900			59969	2172	49465	49511	65771;65772	65771					0.11630923719633302
VIAEILRGV	9	Unmodified	_VIAEILRGV_					0	0	0		ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	OvCa9_classI_Rep2	2	485.30780029296875	2	485.30821	968.601866	0.15282	7.4165E-05	-0.5293	-0.00025687	-0.37648	-0.00018271	485.30783567122637	107.59	2.853	107.28	106.92	109.77	-0.30836					106	57	3	0	0	0	0.045281	1	10075	10075		122.18	39.935	1	204120			59970	2172	49465	49511	65773	65773					0.11630923719633302
VIAEILRGV	9	Unmodified	_VIAEILRGV_					0	0	0		ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.30908203125	2	485.30821	968.601866	-0.269	-0.00013055	0.21359	0.00010366	-0.055407	-2.6889E-05	485.3081229712648	109.12	3.0783	107.4	106.87	109.94	-1.7256					120	58	3	0	0	0	0.03923	3	10019	10007;10019;10032		127.46	33.455	1	249350			59971	2172	49465	49511	65774;65775;65776	65775					0.11630923719633302
VIAIVSGLAFM	11	Unmodified	_VIAIVSGLAFM_					0	0	0			REV__tr|A0A553SLM6|A0A553SLM6_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_20910PE=3SV=1	REV__tr|A0A553SLM6|A0A553SLM6_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_20910PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	561.7510375976562	2	560.825378	1119.6362	1.4041	0.00078748	-3.7733	-0.0021161	-2.3691	-0.0013287	561.3248279784693	123.06	1.2392	121.69	121.26	122.5	-1.3666					42	24	3	0	0	0	0.025681	1	11588	11588		26.693	6.6961	1	30469	+		59972	30240	49466	49512	65777	65777					0.08117003816209944
VIAIVSGLAFM	11	Unmodified	_VIAIVSGLAFM_					0	0	0			REV__tr|A0A553SLM6|A0A553SLM6_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_20910PE=3SV=1	REV__tr|A0A553SLM6|A0A553SLM6_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_20910PE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	560.825378	1119.6362	3.0888	0.0017323	2.7255	0.0015285	5.8143	0.0032608	560.8268397014074	121.59	0.32272	121.59	121.38	121.71	0	-0.062832	0.0047238	NaN	26.693	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106600	+		59973	30240	49466	49512							0.08117003816209944
VIAIVSGLAFM	11	Unmodified	_VIAIVSGLAFM_					0	0	0			REV__tr|A0A553SLM6|A0A553SLM6_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_20910PE=3SV=1	REV__tr|A0A553SLM6|A0A553SLM6_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_20910PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	560.825378	1119.6362	1.0382	0.00058225	-3.6076	-0.0020233	-2.5694	-0.001441	561.3248510768992	122.71	0.89265	121.68	121.32	122.21	-1.0286	0.027312	-0.0023797	NaN	26.693	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64972	+		59974	30240	49466	49512							0.08117003816209944
VIAKKRDSA	9	Unmodified	_VIAKKRDSA_					0	0	0			REV__tr|A0A553SJA9|A0A553SJA9_NIACIAlpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_16360PE=3SV=1	REV__tr|A0A553SJA9|A0A553SJA9_NIACIAlpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_16360PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	494.3027038574219	2	494.300916	986.587279	0.64985	0.00032122	0.97144	0.00048019	1.6213	0.00080141	494.30133224197016	158.55	0.81053	158.55	158.23	159.04	0					38	16	3	0	0	0	0.67509	1	18575	18575		23.042	1.0826	1	650660	+		59975	29987	49467	49513	65778	65778					0.09344851571472645
VIAKKRDSA	9	Unmodified	_VIAKKRDSA_					0	0	0			REV__tr|A0A553SJA9|A0A553SJA9_NIACIAlpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_16360PE=3SV=1	REV__tr|A0A553SJA9|A0A553SJA9_NIACIAlpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_16360PE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	494.300916	986.587279	0.64985	0.00032122	0.97144	0.00048019	1.6213	0.00080141	494.30133224197016	158.55	0.81053	158.55	158.23	159.04	0	0	0	NaN	23.042	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	650660	+		59976	29987	49467	49513							0.09344851571472645
VIAKRRKN	8	Unmodified	_VIAKRRKN_					0	0	0			REV__tr|A0A553SHB3|A0A553SHB3_NIACILargeribosomalsubunitproteinuL23OS=NialliacirculansOX=1397GN=rplWPE=3SV=1	REV__tr|A0A553SHB3|A0A553SHB3_NIACILargeribosomalsubunitproteinuL23OS=NialliacirculansOX=1397GN=rplWPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.2889404296875	2	492.824892	983.635232	1.7105	0.00084295	2.1021	0.001036	3.8126	0.0018789	492.8258487678162	110.31	0.54158	110.31	109.95	110.49	0					18	11	2	0	0	0	0.028476	1	12508	12508		28.254	0	1	140800	+		59977	29787	49468	49514	65779	65779					0.1427597028217633
VIAKVAFKMYL	11	Unmodified	_VIAKVAFKMYL_					0	0	0		nc|ENSG00000054116|O43617-2|TRAPPC3;ENST00000462715.1_1_1:36603336-36605749:-|nuORF;TRAPPC3|p.G159Efs*7|1|0.06|ENSG00000054116|chr1:36137270-36137271|-/TACAGCTAGCAATT|frameshift_variant;ENSG00000054116|ENST00000373166|TRAPPC3	nc|ENSG00000054116|O43617-2|TRAPPC3	nc|ENSG00000054116|O43617-2|TRAPPC3	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8831787109375	2	641.883227	1281.7519	-1.8585	-0.0011929	0.91676	0.00058845	-0.94174	-0.00060448	641.8836457762243	148.91	0.99602	147.48	146.88	147.87	-1.4344					50	20	3	0	0	0	0.72466	1	14640	14640		19.997	0.89325	1	64864			59978	1203	49469	49515	65780	65780					0.12229527667068396
VIALEMAKLP	10	Unmodified	_VIALEMAKLP_					0	0	0			REV__ENST00000327470.4_1_11:22645918-22646086:-|nuORF	REV__ENST00000327470.4_1_11:22645918-22646086:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.821044921875	2	542.825378	1083.6362	1.9313	0.0010483	3.2286	0.0017526	5.1599	0.0028009	542.8268200652998	74.887	0.41131	74.887	74.676	75.087	0					18	9	2	0	0	0	0.026931	1	7444	7444		30.318	0	1	737500	+		59979	24498	49470	49516	65781	65781					0.09773003816212622
VIALPKGVC	9	Unmodified	_VIALPKGVC_					0	0	0			REV__ZNF583|p.G330Afs*43|1|0.13|ENSG00000198440|chr19:56423646-56423647|-/CATTGGACAAGGAT|frameshift_variant	REV__ZNF583|p.G330Afs*43|1|0.13|ENSG00000198440|chr19:56423646-56423647|-/CATTGGACAAGGAT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	450.27435302734375	2	450.272781	898.531009	-0.13529	-6.0919E-05	4.3545	0.0019607	4.2192	0.0018998	450.27464677011136	147.54	1.7967	147.31	146.82	148.62	-0.22696					100	35	5	0	0	0	0.65476	2	14889	14889;14895		25.45	2.5004	1	344090	+		59980	32776	49471	49517	65782;65783	65782					0.07768507410446546
VIAMVFIK	8	Unmodified	_VIAMVFIK_					0	0	0		tr|A0A7D6ZI02|A0A7D6ZI02_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05055PE=4SV=1	tr|A0A7D6ZI02|A0A7D6ZI02_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05055PE=4SV=1	tr|A0A7D6ZI02|A0A7D6ZI02_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05055PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	460.25933837890625	2	460.785524	919.556496	-0.17062	-7.8621E-05	4.3681	0.0020128	4.1975	0.0019341	460.78738387999	56.429	0.86926	56.429	56.135	57.004	0					46	20	4	0	0	0	0.028476	1	4692	4692		26.796	0	1	2175700			59981	35597	49472	49518	65784	65784					0.09349981932882656
VIANQPVVIY	10	Unmodified	_VIANQPVVIY_					0	0	0		ACTR1A|p.D15Y|1|0.07|ENSG00000138107|chr10:102502605-102502605|C/A|missense_variant	ACTR1A|p.D15Y|1|0.07|ENSG00000138107|chr10:102502605-102502605|C/A|missense_variant	ACTR1A|p.D15Y|1|0.07|ENSG00000138107|chr10:102502605-102502605|C/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	558.3004150390625	2	558.326599	1114.63865	-1.5299	-0.00085421	-2.2957	-0.0012817	-3.8256	-0.0021359	558.3252493719632	108.18	0.44373	106.46	106.17	106.62	-1.7256					15	8	2	0	0	0	0.026982	1	9900	9900		30.504	0	1	30771			59982	24	49473	49519	65785	65785					0.0859117554552995
VIAPVRAVL	9	Unmodified	_VIAPVRAVL_					0	0	0		ENSG00000198113|ENST00000357503|TOR4A	ENSG00000198113|ENST00000357503|TOR4A	ENSG00000198113|ENST00000357503|TOR4A	MULTI-MSMS	OvCa9_classI_Rep4_	4	469.31427001953125	2	469.313295	936.612037	1.1761	0.00055197	-1.0607	-0.00049782	0.11538	5.4148E-05	469.3126614542236	96.616	1.1047	94.19	93.913	95.018	-2.4256					46	21	3	0	0	0	0.44294	1	8531	8531		47.916	10.756	1	227230			59983	8786	49474	49520	65786	65786					0.14119531444839595
VIAPVRAVL	9	Unmodified	_VIAPVRAVL_					0	0	0		ENSG00000198113|ENST00000357503|TOR4A	ENSG00000198113|ENST00000357503|TOR4A	ENSG00000198113|ENST00000357503|TOR4A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	469.313295	936.612037	-0.32257	-0.00015139	0.42881	0.00020125	0.10624	4.9859E-05	469.3133217076989	95.105	1.239	94.077	93.824	95.063	-1.0281	-0.061266	0.0004924	NaN	47.916	51	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	173300			59984	8786	49474	49520							0.14119531444839595
VIAPVRAVL	9	Unmodified	_VIAPVRAVL_					0	0	0		ENSG00000198113|ENST00000357503|TOR4A	ENSG00000198113|ENST00000357503|TOR4A	ENSG00000198113|ENST00000357503|TOR4A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	469.313295	936.612037	-0.51717	-0.00024271	0.57366	0.00026923	0.056495	2.6514E-05	469.31345397237516	95.976	1.4132	94.148	93.88	95.293	-1.8286	0.0094834	0.00062836	NaN	47.916	57	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	222570			59985	8786	49474	49520							0.14119531444839595
VIAPWTQV	8	Unmodified	_VIAPWTQV_					0	0	0			REV__nc|ENSG00000068878|Q14997-3|PSME4	REV__nc|ENSG00000068878|Q14997-3|PSME4	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.2373962402344	2	457.260728	912.506903	-0.43079	-0.00019699	-3.9692	-0.001815	-4.4	-0.002012	457.2588081996669	40.224	1.449	40.224	39.926	41.375	0					58	31	4	0	0	0	0.028476	1	2555	2555		33.516	17.042	1	2333500	+		59986	16860	49475	49521	65787	65787					0.04714990248430695
VIASFITLFI	10	Unmodified	_VIASFITLFI_					0	0	0			REV__tr|A0A7D6VTP5|A0A7D6VTP5_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22060PE=4SV=1	REV__tr|A0A7D6VTP5|A0A7D6VTP5_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22060PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	562.3426513671875	2	562.341718	1122.66888	-1.142	-0.00064221	3.7902	0.0021314	2.6482	0.0014892	562.3438081477608	141.84	4.7959	141.62	140.24	145.03	-0.22697					133	96	2	0	0	0	0.76627	1	14367	14367		23.042	0	1	113870	+		59987	31621	49476	49522	65788	65788					0.11245534210706865
VIASLGLRV	9	Unmodified	_VIASLGLRV_					0	0	0			REV__ENSG00000144559|ENST00000455809|TAMM41	REV__ENSG00000144559|ENST00000455809|TAMM41	MULTI-MSMS	OvCa99_classI_Rep5	1	464.3038635253906	2	464.302927	926.591301	1.5084	0.00070036	0.34552	0.00016042	1.8539	0.00086078	464.30297293374707	119.72	0.32294	119.72	119.56	119.88	0					11	7	2	0	0	0	0.44568	1	13749	13749		47.657	4.7931	1	294850	+		59988	19919	49477	49523	65789	65789					0.125069410651804
VIASLVFILI	10	Unmodified	_VIASLVFILI_					0	0	0			REV__nc|ENSG00000087995|Q96IZ6-2|METTL2A	REV__nc|ENSG00000087995|Q96IZ6-2|METTL2A	MULTI-MSMS	OvCa99_classI_Rep5	1	544.36181640625	2	544.359911	1086.70527	0.80347	0.00043738	1.1955	0.00065078	1.999	0.0010882	544.3604048753967	157.41	4.9209	157.41	156.9	161.82	0					252	99	4	0	0	0	0.41408	1	18658	18658		66.429	11.665	1	913740	+		59989	17170	49478	49524	65790	65790					0.16538411107444517
VIATLPAIA	9	Unmodified	_VIATLPAIA_					0	0	0		tr|A0A553SR16|A0A553SR16_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00145PE=3SV=1	tr|A0A553SR16|A0A553SR16_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00145PE=3SV=1	tr|A0A553SR16|A0A553SR16_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00145PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	434.7803039550781	2	434.778754	867.542954	-0.57428	-0.00024968	3.6175	0.0015728	3.0432	0.0013231	434.7802329991387	60.785	2.8032	58.015	56.62	59.423	-2.7702					118	53	4	0	0	0	0.59983	1	4477	4477		31.955	5.1588	1	373020			59990	34219	49479	49525	65791	65791					0.10388447425282266
VIAYKIKVD	9	Unmodified	_VIAYKIKVD_					0	0	0		tr|A0A7D7A6K9|A0A7D7A6K9_9CLOTTransportersubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11190PE=4SV=1	tr|A0A7D7A6K9|A0A7D7A6K9_9CLOTTransportersubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11190PE=4SV=1	tr|A0A7D7A6K9|A0A7D7A6K9_9CLOTTransportersubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11190PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.3389892578125	2	524.823692	1047.63283	0.95247	0.00049988	0.41697	0.00021883	1.3694	0.00071871	524.8237307649796	79.148	0.68254	79.148	78.791	79.474	0					34	16	3	0	0	0	0.027462	1	8070	8070		45.952	1.8352	1	882310			59991	36195	49480	49526	65792	65792					0.11092077033845271
VIAYYWSE	8	Unmodified	_VIAYYWSE_					0	0	0		ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	ENSG00000149418|ENST00000278742|ST14	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7498168945312	2	515.74765	1029.48075	3.5779	0.0018453	3.9966	0.0020612	7.5744	0.0039065	515.7496284830565	132.62	1.8654	131.12	130.75	132.61	-1.5014					104	37	5	0	0	0	0.69415	1	12768	12768		44.531	7.372	1	443820			59992	5457	49481	49527	65793	65793					-0.03281323713713391
VICLFPVILV	10	Unmodified	_VICLFPVILV_					0	0	0			REV__ENSG00000171505|ENST00000304880|OR1N1	REV__ENSG00000171505|ENST00000304880|OR1N1	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.3511352539062	2	558.348489	1114.68242	0.95616	0.00053387	1.7859	0.00099713	2.742	0.001531	558.3495032263	83.609	2.0584	80.946	80.486	82.544	-2.6629					122	42	4	0	0	0	0.49566	1	6981	6981		54.765	3.4292	1	1274500	+		59993	21622	49482	49528	65794	65794					0.1296706871828519
VICVMAMVCF	10	Carbamidomethyl (C),Oxidation (M)	_VICVM(Oxidation (M))AMVC(Carbamidomethyl (C))F_	VIC(0.017)VMAMVC(0.983)F	VICVM(0.5)AM(0.5)VCF	VIC(-18)VMAMVC(18)F	VICVM(0)AM(0)VCF	0	1	1		ENST00000334534.9_1_20:10604129-10604219:+|nuORF	ENST00000334534.9_1_20:10604129-10604219:+|nuORF	ENST00000334534.9_1_20:10604129-10604219:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	594.7667846679688	2	594.767834	1187.52111	1.7302	0.001029	-3.4531	-0.0020538	-1.7229	-0.0010248	594.7656888910103	127.31	1.4135	127.31	127.01	128.42	0					79	30	4	0	0	0	0.5794	1	14802	14802		44.531	8.0843	4	1053200			59994	10487	49483	49529	65795	65795	106	298;299			-0.06514507973110994
VIDATLRTI	9	Unmodified	_VIDATLRTI_					0	0	0			REV__tr|A0A553SUD0|A0A553SUD0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06780PE=4SV=1	REV__tr|A0A553SUD0|A0A553SUD0_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06780PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.3017883300781	2	501.303124	1000.5917	-0.7967	-0.00039939	0.63541	0.00031853	-0.16129	-8.0855E-05	501.30331602589735	104.52	1.9398	102.4	102.01	103.95	-2.1192					90	35	4	0	0	0	0.1804	1	9471	9471		79.713	8.8964	1	367440	+		59995	31062	49484	49530	65796	65796					0.09142315994392902
VIDGHIYAV	9	Unmodified	_VIDGHIYAV_					0	0	0		ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	ENSG00000079999|ENST00000171111|KEAP1	MSMS	OvCa99_classI_Rep5	1	493.770751953125	2	493.768917	985.523281	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.175	1	83.175	82.675	83.675	0								0	0	0	0.057846	1	8642	8642		76.847	8.3619	1				59996	1626	49485	49531	65797	65797					0.0299407141451411
VIDIKFIKYIF	11	Unmodified	_VIDIKFIKYIF_					0	0	0			REV__ENSG00000115594|ENST00000410023|IL1R1	REV__ENSG00000115594|ENST00000410023|IL1R1	MULTI-MSMS	OvCa9_classI_Rep3	3	466.95208740234375	3	466.951363	1397.83226	1.5916	0.00074322	0.2613	0.00012202	1.853	0.00086524	466.9514863874782	62.714	2.1935	59.681	59.362	61.555	-3.0339					129	43	5	0	0	0	0.72472	1	2356	2356		19.263	0	1	504980	+		59997	18257	49486	49532	65798	65798					0.14925712261742774
VIDISKDTVVE	11	Unmodified	_VIDISKDTVVE_					0	0	0			REV__tr|A0A553ST41|A0A553ST41_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_04140PE=4SV=1	REV__tr|A0A553ST41|A0A553ST41_NIACIGfo/Idh/MocAfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_04140PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	609.3348999023438	2	609.334818	1216.65508	0.48024	0.00029263	4.016	0.0024471	4.4962	0.0027397	609.3372206509321	123.24	1.3877	121.87	121.56	122.94	-1.3666					71	27	4	0	0	0	0.56391	1	11667	11667		47.96	7.9014	1	110090	+		59998	30915	49487	49533	65799	65799					0.05542211920965201
VIDLLTQIYF	10	Unmodified	_VIDLLTQIYF_					0	0	0			REV__ENST00000568777.5_1_15:72638642-72646100:-|nuORF	REV__ENST00000568777.5_1_15:72638642-72646100:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.8791809082031	3	408.900668	1223.68018	0.51093	0.00020892	3.2055	0.0013107	3.7164	0.0015197	408.90192969640464	59.666	0.22789	59.666	59.611	59.839	0					11	5	3	0	0	0	0.026665	1	5176	5176		38.754	8.1847	1	355410	+		59999	23261	49488	49534	65800	65800					0.07728311514188135
VIDTLVRTVTT	11	Unmodified	_VIDTLVRTVTT_					0	0	0			REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	REV__nc|ENSG00000135905|Q96BY6-3|DOCK10	MULTI-SECPEP	OvCa99_classI_Rep5	1	610.319580078125	2	609.358628	1216.7027	2.1254	0.0012951	-2.5681	-0.0015649	-0.44275	-0.00026979	609.3560867453017	134.32	0.23497	134.32	134.1	134.34	0					6	4	2	0	0	0	0.025861	1	15605	15605		17.468	0	1	39062	+		60000	28871	49489	49535	65801	65801					0.10301910911812229
VIDVIDVARQA	11	Unmodified	_VIDVIDVARQA_					0	0	0		ENSG00000006459|ENST00000397560|KDM7A;nc|ENSG00000006459|Q6ZMT4-2|KDM7A	ENSG00000006459|ENST00000397560|KDM7A	ENSG00000006459|ENST00000397560|KDM7A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	400.904541015625	3	400.231189	1197.67174	1.9881	0.00079571	-4.2002	-0.0016811	-2.2121	-0.00088535	400.22947299564385	83.252	0.97429	80.589	80.29	81.265	-2.6629					32	19	2	0	0	0	0.02539	1	6975	6975		44.639	31.682	1	110130			60001	878	49490	49536	65802	65802					0.08080757597554111
VIDVLPIIE	9	Unmodified	_VIDVLPIIE_					0	0	0		tr|A0A553SPC1|A0A553SPC1_NIACIDUF177domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26045PE=4SV=1	tr|A0A553SPC1|A0A553SPC1_NIACIDUF177domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26045PE=4SV=1	tr|A0A553SPC1|A0A553SPC1_NIACIDUF177domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26045PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.827880859375	2	505.810251	1009.60595	-0.40979	-0.00020728	-2.9723	-0.0015034	-3.3821	-0.0017107	505.8087170705397	78.116	0.87143	75.3	74.777	75.649	-2.8165					25	17	2	0	0	0	0.027462	1	6313	6313		37.159	0	1	54877			60002	34026	49491	49537	65803	65803					0.10152968422664799
VIEAGEQLAK	10	Unmodified	_VIEAGEQLAK_					0	0	0			REV__ENSG00000198231|ENST00000389924|DDX42	REV__ENSG00000198231|ENST00000389924|DDX42	MULTI-MSMS	OvCa99_classI_Rep5	1	529.2990112304688	2	529.298039	1056.58152	2.8314	0.0014987	-0.68806	-0.00036419	2.1434	0.0011345	529.2976130755292	89.558	0.78555	89.558	89.275	90.06	0					57	18	4	0	0	0	0.48198	2	9580	9553;9580		56.721	3.3696	1	9592900	+		60003	23004	49492	49538	65804;65805	65805					0.055497082691545074
VIEAGIFLSL	10	Unmodified	_VIEAGIFLSL_					0	0	0			REV__ENSG00000140274|ENST00000323030|DUOXA2	REV__ENSG00000140274|ENST00000323030|DUOXA2	MULTI-MSMS	OvCa99_classI_Rep5	1	531.3175048828125	2	531.3157	1060.61685	1.9961	0.0010606	-0.36135	-0.00019199	1.6347	0.00086856	531.3153054546185	106.7	0.99451	106.7	106.36	107.36	0					50	22	3	0	0	0	0.18827	1	12005	12005		96.19	8.494	1	4217500	+		60004	19657	49493	49539	65806	65806					0.0889637079694694
VIECTGAALQS	11	Unmodified	_VIECTGAALQS_					0	0	0			REV__ENSG00000219438|ENST00000402357|TAFA5	REV__ENSG00000219438|ENST00000402357|TAFA5	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2830200195312	2	546.273706	1090.53286	0.96535	0.00052735	1.6557	0.00090448	2.6211	0.0014318	546.2743304574128	83.351	0.9729	83.351	82.949	83.921	0					55	22	5	0	0	0	0.025457	1	8644	8644		36.447	4.9169	1	1446700	+		60005	23332	49494	49540	65807	65807					-0.008785283622728457
VIEDVSFCK	9	Unmodified	_VIEDVSFCK_					0	0	0			REV__nc|ENSG00000112964|P10912-3|GHR	REV__nc|ENSG00000112964|P10912-3|GHR	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.8080444335938	2	520.260068	1038.50558	-1.2344	-0.00064223	-4.4626	-0.0023217	-5.697	-0.0029639	520.2576925693045	37.522	0.2766	37.522	37.344	37.621	0					9	5	2	0	0	0	0.027462	1	2050	2050		23.042	0	1	45564	+		60006	18128	49495	49541	65808	65808					-0.012130119026551256
VIEFRHKRKVF	11	Unmodified	_VIEFRHKRKVF_					0	0	0		nc|ENSG00000169181|Q6UXU4-2|GSG1L;nc|ENSG00000169181|Q6UXU4-4|GSG1L;nc|ENSG00000169181|Q6UXU4-3|GSG1L;ENSG00000169181|ENST00000447459|GSG1L	nc|ENSG00000169181|Q6UXU4-2|GSG1L	nc|ENSG00000169181|Q6UXU4-2|GSG1L	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.9586486816406	3	486.961256	1457.86194	-6.3941	-0.0031137	1.5633	0.00076127	-4.8308	-0.0023524	486.96182500070705	161.6	3.2719	159.97	158.36	161.63	-1.6239					171	80	4	0	0	0	0.72548	1	15973	15973		9.2118	0.41249	1	99720			60007	6984	49496	49542	65809	65809					0.15132089050416653
VIEGLETPI	9	Unmodified	_VIEGLETPI_					0	0	0			REV__tr|A0A553SP40|A0A553SP40_NIACIDNAtopoisomerase1OS=NialliacirculansOX=1397GN=topAPE=3SV=1	REV__tr|A0A553SP40|A0A553SP40_NIACIDNAtopoisomerase1OS=NialliacirculansOX=1397GN=topAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	485.7765808105469	2	485.776408	969.538263	-0.82826	-0.00040235	-0.085153	-4.1365E-05	-0.91341	-0.00044371	485.7762722854873	115.47	1.184	114.42	114.06	115.24	-1.0414					46	23	3	0	0	0	0.29717	1	8576	8576		63.306	5.495	1	125370	+		60008	30488	49497	49543	65810	65810					0.05227518491858518
VIEGNIDIV	9	Unmodified	_VIEGNIDIV_					0	0	0			REV__tr|A0A7D6VUR9|A0A7D6VUR9_9CLOTGlutaredoxinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21465PE=4SV=1	REV__tr|A0A7D6VUR9|A0A7D6VUR9_9CLOTGlutaredoxinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21465PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.27447509765625	2	486.274032	970.533512	0.041941	2.0395E-05	-0.60136	-0.00029243	-0.55942	-0.00027203	486.2735759942041	78.751	0.94266	76	75.761	76.703	-2.7514					38	19	2	0	0	0	0.14998	1	6359	6359		84.916	13.038	1	454450	+		60009	31690	49498	49544	65811	65811					0.04706634349099659
VIEGNIDIV	9	Unmodified	_VIEGNIDIV_					0	0	0			REV__tr|A0A7D6VUR9|A0A7D6VUR9_9CLOTGlutaredoxinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21465PE=4SV=1	REV__tr|A0A7D6VUR9|A0A7D6VUR9_9CLOTGlutaredoxinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21465PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	486.274032	970.533512	-0.095014	-4.6203E-05	-0.12597	-6.1258E-05	-0.22099	-0.00010746	486.2738561396492	77.945	1.0868	76.156	75.623	76.709	-1.7894	0.078061	0.00013946	NaN	84.916	38	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135700	+		60010	31690	49498	49544							0.04706634349099659
VIEGNIDIV	9	Unmodified	_VIEGNIDIV_					0	0	0			REV__tr|A0A7D6VUR9|A0A7D6VUR9_9CLOTGlutaredoxinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21465PE=4SV=1	REV__tr|A0A7D6VUR9|A0A7D6VUR9_9CLOTGlutaredoxinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21465PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	486.274032	970.533512	0.041941	2.0395E-05	-0.60136	-0.00029243	-0.55942	-0.00027203	486.2735759942041	78.751	0.94266	76	75.761	76.703	-2.7514	-0.078061	-0.00032288	NaN	84.916	38	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	454450	+		60011	31690	49498	49544							0.04706634349099659
VIEHQGDIT	9	Unmodified	_VIEHQGDIT_					0	0	0		L1M1_dup621|chr1:224985612-224987088:+|1.1406864670825911|0.0275683224481481|5.37|427.0|6|1|sense	L1M1_dup621|chr1:224985612-224987088:+|1.1406864670825911|0.0275683224481481|5.37|427.0|6|1|sense	L1M1_dup621|chr1:224985612-224987088:+|1.1406864670825911|0.0275683224481481|5.37|427.0|6|1|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	506.26080322265625	2	506.258914	1010.50327	-0.50726	-0.0002568	0.36554	0.00018506	-0.14172	-7.1748E-05	506.2592188272637	80.284	3.2748	77.944	77.563	80.838	-2.3399					161	64	6	0	0	0	0.48324	1	4430	4430		44.117	0	1	3690200			60012	14537	49499	49545	65812	65812					-0.0015572431610735293
VIEIHHPEP	9	Unmodified	_VIEIHHPEP_					0	0	0		ENSG00000103569|ENST00000219919|AQP9	ENSG00000103569|ENST00000219919|AQP9	ENSG00000103569|ENST00000219919|AQP9	MULTI-SECPEP	OvCa9_classI_Rep2	2	535.813232421875	2	535.785099	1069.55564	-1.1118	-0.00059567	4.0099	0.0021485	2.8982	0.0015528	535.7872061697536	95.13	0.93906	94.102	93.775	94.714	-1.0281					36	18	3	0	0	0	0.027462	1	8586	8586		35.618	0	1	64423			60013	2332	49500	49546	65813	65813					0.023648588175319674
VIEINPLVE	9	Unmodified	_VIEINPLVE_					0	0	0			REV__tr|A0A553SP84|A0A553SP84_NIACIPyridoxalphosphatehomeostasisproteinOS=NialliacirculansOX=1397GN=CEQ21_25900PE=3SV=1	REV__tr|A0A553SP84|A0A553SP84_NIACIPyridoxalphosphatehomeostasisproteinOS=NialliacirculansOX=1397GN=CEQ21_25900PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.2958374023438	2	513.297507	1024.58046	-1.0624	-0.00054535	-1.7461	-0.00089628	-2.8086	-0.0014416	513.2960537048449	41.497	1.5965	38.516	38.231	39.828	-2.9804					63	30	3	0	0	0	0.42676	1	1874	1874		49.442	5.3247	1	585930	+		60014	30511	49501	49547	65814	65814					0.0691549390023738
VIEKESQIL	9	Unmodified	_VIEKESQIL_					0	0	0			REV__nc|ENSG00000165929|Q8N9U0-2|TC2N	REV__nc|ENSG00000165929|Q8N9U0-2|TC2N	MULTI-SECPEP	OvCa9_classI_Rep2	2	530.279541015625	2	529.808239	1057.60193	-1.2967	-0.00068698	3.6337	0.0019252	2.3371	0.0012382	529.8104601183544	121.42	1.0885	121.22	121	122.09	-0.19719					27	21	2	0	0	0	0.027462	1	11827	11827		60.118	5.3419	1	36692	+		60015	21140	49502	49548	65815	65815					0.07542878928961727
VIELFIPSGFR	11	Unmodified	_VIELFIPSGFR_					0	0	0		ENSG00000154511|ENST00000370310|DIPK1A	ENSG00000154511|ENST00000370310|DIPK1A	ENSG00000154511|ENST00000370310|DIPK1A	MULTI-MSMS	OvCa9_classI_Rep4_	4	639.3639526367188	2	639.366256	1276.71796	-4.0344	-0.0025795	-0.8848	-0.00056571	-4.9192	-0.0031452	639.3655564998056	154.53	1.1695	153.08	152.77	153.94	-1.4516					91	28	4	0	0	0	0.72485	1	15336	15336		17.468	0.99486	1	586460			60016	5743	49503	49549	65816	65816					0.09066822499653426
VIERIPRLRR	10	Unmodified	_VIERIPRLRR_					0	0	0		ENSG00000123143|ENST00000242783|PKN1;nc|ENSG00000123143|Q16512-2|PKN1;nc|ENSG00000123143|Q16512-3|PKN1;ENST00000585839.5_1_19:14544333-14578454:+|nuORF;PKN1|p.M704Sfs*38|1|0.04|ENSG00000123143|chr19:14469475-14469475|T/-|frameshift_variant;ENST00000586900.1_1_19:14574367-14578454:+|nuORF	ENSG00000123143|ENST00000242783|PKN1	ENSG00000123143|ENST00000242783|PKN1	MULTI-SECPEP	OvCa9_classI_Rep3	3	436.2617492675781	3	436.6176	1306.83097	1.7123	0.00074763	-1.9483	-0.00085067	-0.236	-0.00010304	436.61681342903813	64.457	0.25206	61.464	61.344	61.596	-2.9933					7	4	2	0	0	0	0.027193	1	2495	2495		16.717	9.6987	1	14528			60017	3576	49504	49550	65817	65817					0.18982935736175932
VIERSLILL	9	Unmodified	_VIERSLILL_					0	0	0		nc|ENSG00000188917|Q96GJ1-2|TRMT2B	nc|ENSG00000188917|Q96GJ1-2|TRMT2B	nc|ENSG00000188917|Q96GJ1-2|TRMT2B	MULTI-MSMS	OvCa99_classI_Rep5	1	528.3439331054688	2	528.344792	1054.67503	1.3138	0.00069413	0.37068	0.00019585	1.6845	0.00088997	528.3449888979545	149.25	0.53596	149.25	149.01	149.55	0					19	10	2	0	0	0	0.2422	1	17461	17461		69.628	6.3214	1	86065			60018	15233	49505	49551	65818	65818					0.14988052442231492
VIETGTIPLK	10	Unmodified	_VIETGTIPLK_					0	0	0			REV__ENSG00000065615|ENST00000369681|CYB5R4	REV__ENSG00000065615|ENST00000369681|CYB5R4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.294921875	2	535.826432	1069.63831	-1.8971	-0.0010165	1.9415	0.0010403	0.044384	2.3782E-05	535.8273660489784	71.797	0.58022	68.34	68.124	68.704	-3.4563					23	11	3	0	0	0	0.026665	1	5524	5524		60.972	33.09	1	150030	+		60019	16800	49506	49552	65819	65819					0.10627755825657914
VIETGTIPLK	10	Unmodified	_VIETGTIPLK_					0	0	0			REV__ENSG00000065615|ENST00000369681|CYB5R4	REV__ENSG00000065615|ENST00000369681|CYB5R4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	535.826432	1069.63831	-0.62184	-0.0003332	-0.83239	-0.00044602	-1.4542	-0.00077922	535.8269093891598	70.687	0.86852	68.116	67.714	68.583	-2.5707	-0.030259	-0.0019053	NaN	40.778	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98498	+		60020	16800	49506	49552							0.10627755825657914
VIETGTIPLK	10	Unmodified	_VIETGTIPLK_					0	0	0			REV__ENSG00000065615|ENST00000369681|CYB5R4	REV__ENSG00000065615|ENST00000369681|CYB5R4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	535.826432	1069.63831	1.4159	0.00075869	-3.1291	-0.0016767	-1.7132	-0.00091796	535.8257085156553	70.702	1.2137	67.982	67.75	68.964	-2.7196	-0.16384	-0.0043665	NaN	40.778	61	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	178810	+		60021	16800	49506	49552							0.10627755825657914
VIEVKRPK	8	Unmodified	_VIEVKRPK_					0	0	0			REV__tr|A0A7D6W3Z8|A0A7D6W3Z8_9CLOTTyrosine-typerecombinase/integraseOS=ClostridiumintestinaleOX=36845GN=HZF06_11845PE=4SV=1	REV__tr|A0A7D6W3Z8|A0A7D6W3Z8_9CLOTTyrosine-typerecombinase/integraseOS=ClostridiumintestinaleOX=36845GN=HZF06_11845PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.68768310546875	2	484.816202	967.617851	0.33262	0.00016126	-0.43202	-0.00020945	-0.099406	-4.8194E-05	484.8157219699877	111.8	1.2938	110.29	110	111.29	-1.5111					56	24	4	0	0	0	0.028476	1	10402	10402		29.15	0	1	187250	+		60022	31928	49507	49553	65820	65820					0.13274629956515582
VIEVRSNPRPV	11	Unmodified	_VIEVRSNPRPV_					0	0	0			REV__NOS1AP|p.S460Vfs*43|1|0.07|ENSG00000198929|chr1:162367321-162367322|-/A|frameshift_variant	REV__NOS1AP|p.S460Vfs*43|1|0.07|ENSG00000198929|chr1:162367321-162367322|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3687133789062	2	633.369861	1264.72517	-4.8824	-0.0030923	3.9881	0.002526	-0.89421	-0.00056637	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.7046	1	13083	13083		28.081	2.5074	1	765700	+		60023	23095	49508	49554	65821	65821					0.1033955510006308
VIEYLSKGKL	10	Unmodified	_VIEYLSKGKL_					0	0	0		tr|A0A7D6ZX79|A0A7D6ZX79_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=mutSPE=3SV=1	tr|A0A7D6ZX79|A0A7D6ZX79_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=mutSPE=3SV=1	tr|A0A7D6ZX79|A0A7D6ZX79_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=mutSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8436889648438	2	575.347532	1148.68051	-6.2917	-0.0036199	2.5771	0.0014827	-3.7146	-0.0021372	575.3489585356984	154.97	1.0558	153.9	153.56	154.61	-1.073					68	25	4	0	0	0	0.82648	1	13368	13368		15.642	0	1	137860			60024	35866	49509	49555	65822	65822					0.11211731234061517
VIFEEDPTV	9	Unmodified	_VIFEEDPTV_					0	0	0		tr|A0A7D6VTB3|A0A7D6VTB3_9CLOTendopeptidaseLaOS=ClostridiumintestinaleOX=36845GN=HZF06_16610PE=3SV=1	tr|A0A7D6VTB3|A0A7D6VTB3_9CLOTendopeptidaseLaOS=ClostridiumintestinaleOX=36845GN=HZF06_16610PE=3SV=1	tr|A0A7D6VTB3|A0A7D6VTB3_9CLOTendopeptidaseLaOS=ClostridiumintestinaleOX=36845GN=HZF06_16610PE=3SV=1	MSMS	OvCa9_classI_Rep4_	4	524.7664184570312	2	524.763497	1047.51244	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.9	1	128.43	127.93	128.93	-1.469								0	0	0	0.17575	1	12450	12450		40.573	1.7665	1				60025	35103	49510	49556	65823	65823					-0.009413757504489695
VIFFFFFWYFR	11	Unmodified	_VIFFFFFWYFR_					0	0	0		ENST00000316423.10_1_4:39501678-39501759:-|nuORF	ENST00000316423.10_1_4:39501678-39501759:-|nuORF	ENST00000316423.10_1_4:39501678-39501759:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.7991333007812	3	540.279703	1617.81728	2.3285	0.001258	-3.5085	-0.0018956	-1.18	-0.00063755	540.2776292186293	82.719	0.2591	82.719	82.522	82.781	0					7	5	2	0	0	0	0.02653	1	8574	8574		3.4087	0.19739	1	205290			60026	10344	49511	49557	65824	65824					0.0330826518440972
VIFIGALF	8	Unmodified	_VIFIGALF_					0	0	0		tr|A0A553SQG8|A0A553SQG8_NIACIYbfB/YjiJfamilyMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_07620PE=4SV=1	tr|A0A553SQG8|A0A553SQG8_NIACIYbfB/YjiJfamilyMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_07620PE=4SV=1	tr|A0A553SQG8|A0A553SQG8_NIACIYbfB/YjiJfamilyMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_07620PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	440.26885986328125	2	440.270564	878.526576	-2.654	-0.0011685	-2.194	-0.00096596	-4.848	-0.0021344	440.26950058570867	153.36	0.68338	153.13	152.88	153.56	-0.22696					26	17	2	0	0	0	0.75058	1	15606	15606		16.705	0	1	20899			60027	34160	49512	49558	65825	65825					0.08245366259166076
VIFIIFLIDG	10	Unmodified	_VIFIIFLIDG_					0	0	0			REV__L1PA8_dup7672|chr19:21549449-21550650:-|1.0893067253068611|0.363832208290546|1.58|386.0|46|1|anti-sense	REV__L1PA8_dup7672|chr19:21549449-21550650:-|1.0893067253068611|0.363832208290546|1.58|386.0|46|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	575.345458984375	2	575.349543	1148.68453	-6.2917	-0.0036199	-0.91883	-0.00052865	-7.2105	-0.0041486	575.3489585356984	154.97	1.0558	153.9	153.56	154.61	-1.073					68	25	4	0	0	0	0.81289	1	13304	13304		17.365	0.89182	1	137860	+		60028	28579	49513	49559	65826	65826					0.11613820727757229
VIFIIGGFLL	10	Unmodified	_VIFIIGGFLL_					0	0	0		tr|A0A553SKS7|A0A553SKS7_NIACIDUF456familyproteinOS=NialliacirculansOX=1397GN=CEQ21_19190PE=4SV=1	tr|A0A553SKS7|A0A553SKS7_NIACIDUF456familyproteinOS=NialliacirculansOX=1397GN=CEQ21_19190PE=4SV=1	tr|A0A553SKS7|A0A553SKS7_NIACIDUF456familyproteinOS=NialliacirculansOX=1397GN=CEQ21_19190PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.2808227539062	2	546.346803	1090.67905	2.5928	0.0014166	4.0498	0.0022126	6.6426	0.0036292	546.3492239472043	96.261	0.59064	96.261	95.869	96.459	0					23	13	3	0	0	0	0.026839	1	10555	10555		19.36	0	1	355210			60029	33649	49514	49560	65827	65827					0.13734141935947264
VIFKTTTAATA	11	Unmodified	_VIFKTTTAATA_					0	0	0			REV__nc|ENSG00000170054|Q86WD7-5|SERPINA9	REV__nc|ENSG00000170054|Q86WD7-5|SERPINA9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.29931640625	2	562.321514	1122.62847	-0.15285	-8.5952E-05	-3.6682	-0.0020627	-3.821	-0.0021487	562.8198048053151	119.62	0.52669	118.27	118.09	118.61	-1.3444					14	9	2	0	0	0	0.025909	1	11232	11232		14.137	0	1	18703	+		60030	21512	49515	49561	65828	65828					0.07206567820276177
VIFNKYNN	8	Unmodified	_VIFNKYNN_					0	0	0			REV__tr|A0A7D6VZE2|A0A7D6VZE2_9CLOTdITP/XTPpyrophosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_19955PE=3SV=1	REV__tr|A0A7D6VZE2|A0A7D6VZE2_9CLOTdITP/XTPpyrophosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_19955PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	506.2666931152344	2	506.266542	1010.51853	0.36786	0.00018623	-0.45891	-0.00023233	-0.091056	-4.6099E-05	506.2661426930151	67.368	3.7219	64.48	62.966	66.688	-2.8873					175	73	3	0	0	0	0.74679	1	2847	2847		28.254	1.4582	1	90382	+		60031	31836	49516	49562	65829	65829					0.013691872717458864
VIFNLLQKL	9	Unmodified	_VIFNLLQKL_					0	0	0		ENST00000310653.10_2_11:73388880-73388949:-|nuORF	ENST00000310653.10_2_11:73388880-73388949:-|nuORF	ENST00000310653.10_2_11:73388880-73388949:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8204345703125	2	544.347335	1086.68012	-0.33265	-0.00018108	2.7263	0.0014841	2.3937	0.001303	544.3483937017772	60.149	0.39522	60.149	59.997	60.392	0					19	9	3	0	0	0	0.027462	1	5256	5256		37.159	0	1	460100			60032	10288	49517	49563	65830	65830					0.14024356304844332
VIFPHKVEEL	10	Unmodified	_VIFPHKVEEL_					0	0	0			REV__nc|ENSG00000108443|P23443-4|RPS6KB1;REV__RPS6KB1-VMP1|5|fusion	REV__RPS6KB1-VMP1|5|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	606.3002319335938	2	605.845156	1209.67576	2.0123	0.0012192	3.712	0.0022489	5.7243	0.0034681	606.3495203128929	129.28	0.60579	129.28	129.07	129.68	0					13	12	2	0	0	0	0.026685	1	14981	14981		37.812	3.639	1	41973	+		60033	17888;29341	49518	49564	65831	65831					0.07930847091279247
VIFPRGMPK	9	Unmodified	_VIFPRGMPK_					0	0	0		ENST00000396920.7_3_10:13344313-13344355:-|nuORF	ENST00000396920.7_3_10:13344313-13344355:-|nuORF	ENST00000396920.7_3_10:13344313-13344355:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.2919921875	2	522.80478	1043.59501	-0.50965	-0.00026645	3.4569	0.0018073	2.9473	0.0015409	522.8059875731174	56.726	0.33728	56.726	56.538	56.875	0					12	7	2	0	0	0	0.027441	1	4732	4732		37.159	0	1	230360			60034	11327	49519	49565	65832	65832					0.07495287567394371
VIFPVLSELLL	11	Unmodified	_VIFPVLSELLL_					0	0	0			REV__nc|ENSG00000138036|Q8TCX1-4|DYNC2LI1	REV__nc|ENSG00000138036|Q8TCX1-4|DYNC2LI1	MULTI-SECPEP	OvCa99_classI_Rep5	1	621.2796630859375	2	621.889032	1241.76351	1.9249	0.0011971	-2.7808	-0.0017294	-0.85594	-0.0005323	621.887169312762	121.97	0.55918	121.97	121.71	122.27	0					31	11	4	0	0	0	0.025239	1	14036	14036		49.442	29.445	1	676350	+		60035	28881	49520	49566	65833	65833					0.1523004796204077
VIFSVVSLISN	11	Unmodified	_VIFSVVSLISN_					0	0	0			REV__RAB12|p.L224Vfs*11|1|0.06|ENSG00000206418|chr18:8638195-8638196|-/TGTTGTTTCCTTTATT|frameshift_variant	REV__RAB12|p.L224Vfs*11|1|0.06|ENSG00000206418|chr18:8638195-8638196|-/TGTTGTTTCCTTTATT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3427734375	2	589.344989	1176.67542	-2.1868	-0.0012888	-1.3084	-0.00077111	-3.4952	-0.0020599	589.3441619466173	148.26	4.549	146.82	145.53	150.08	-1.435					304	95	6	0	0	0	0.71191	1	14576	14576		25.574	5.5773	1	385010	+		60036	29327	49521	49567	65834	65834					0.09415427371459373
VIFSYSADL	9	Unmodified	_VIFSYSADL_					0	0	0			REV__ENSG00000176294|ENST00000557677|OR4N2	REV__ENSG00000176294|ENST00000557677|OR4N2	MULTI-MSMS	OvCa9_classI_Rep3	3	507.7626953125	2	507.760758	1013.50696	0.78302	0.00039759	3.1816	0.0016155	3.9646	0.0020131	507.76227016858786	127.25	3.6353	126.18	123.46	127.1	-1.0715					121	69	3	0	0	0	0.29717	1	9954	9954		63.306	7.8021	1	658450	+		60037	21946	49522	49568	65835	65835					0.0007494545775443839
VIFTLLLISYG	11	Unmodified	_VIFTLLLISYG_					0	0	0		nc|ENSG00000225997|P0C604|OR4A8	nc|ENSG00000225997|P0C604|OR4A8	nc|ENSG00000225997|P0C604|OR4A8	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8677978515625	2	619.873382	1237.73221	-3.1788	-0.0019704	-3.1308	-0.0019407	-6.3096	-0.0039111	619.8711859647292	147.21	3.9856	146.98	144.83	148.82	-0.22696					207	79	4	0	0	0	0.72459	1	14831	14831		20.947	0.95016	1	163200			60038	15322	49523	49569	65836	65836					0.12285474927966789
VIFTPVLLN	9	Unmodified	_VIFTPVLLN_					0	0	0		ENST00000543251.5_1_5:72861615-72861666:+|nuORF	ENST00000543251.5_1_5:72861615-72861666:+|nuORF	ENST00000543251.5_1_5:72861615-72861666:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.8143615722656	2	508.312961	1014.61137	0.50064	0.00025448	1.8849	0.00095809	2.3855	0.0012126	508.31390114872255	97.718	0.55937	95.339	94.808	95.368	-2.3786					33	10	4	0	0	0	0.027091	1	8667	8667		71.296	2.5089	1	877360			60039	13492	49524	49570	65837	65837					0.10464692005120924
VIFVFSLFK	9	Unmodified	_VIFVFSLFK_					0	0	0		tr|A0A553SSK9|A0A553SSK9_NIACISrtBfamilysortaseOS=NialliacirculansOX=1397GN=srtBPE=4SV=1	tr|A0A553SSK9|A0A553SSK9_NIACISrtBfamilysortaseOS=NialliacirculansOX=1397GN=srtBPE=4SV=1	tr|A0A553SSK9|A0A553SSK9_NIACISrtBfamilysortaseOS=NialliacirculansOX=1397GN=srtBPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3184814453125	2	550.331153	1098.64775	-0.3105	-0.00017088	2.4846	0.0013674	2.1741	0.0011965	550.332661683082	51.397	0.50481	51.397	51.164	51.669	0					23	11	3	0	0	0	0.027462	1	3960	3960		47.916	9.1095	1	554360			60040	34387	49525	49571	65838	65838					0.1023756890185723
VIFVIPEKF	9	Unmodified	_VIFVIPEKF_					0	0	0		tr|A0A7D6ZRX0|A0A7D6ZRX0_9CLOTCysteinesynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05390PE=4SV=1	tr|A0A7D6ZRX0|A0A7D6ZRX0_9CLOTCysteinesynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05390PE=4SV=1	tr|A0A7D6ZRX0|A0A7D6ZRX0_9CLOTCysteinesynthasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05390PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	546.32763671875	2	546.328611	1090.64267	0.029432	1.608E-05	-4.2686	-0.002332	-4.2391	-0.002316	546.3261926719827	105.36	1.6666	104.02	103.73	105.4	-1.3482					74	31	4	0	0	0	0.33652	1	7398	7398		58.782	0.55203	1	592090			60041	35725	49526	49572	65839	65839					0.10097265039212289
VIGAMVLAMSI	11	2 Oxidation (M)	_VIGAM(Oxidation (M))VLAM(Oxidation (M))SI_		VIGAM(1)VLAM(1)SI		VIGAM(77)VLAM(77)SI	0	0	2			REV__tr|A0A553SRH4|A0A553SRH4_NIACINa+/H+antiporterNhaCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00930PE=3SV=1	REV__tr|A0A553SRH4|A0A553SRH4_NIACINa+/H+antiporterNhaCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00930PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	568.812255859375	2	568.806328	1135.5981	1.8124	0.0010309	3.541	0.0020141	5.3534	0.003045	568.8083349173353	125.69	1.8805	125.69	125.39	127.27	0					152	41	6	0	0	0	0.22384	1	14661	14661		76.774	10.345	1	10570000	+		60042	30730	49527	49573	65840	65840		680;681			0.03572749839236167
VIGCVKTLVP	10	Unmodified	_VIGCVKTLVP_					0	0	0		ENSG00000189339|ENST00000617444|SLC35E2B;nc|ENSG00000215790|P0CK97-2|SLC35E2A;nc|ENSG00000215790|P0CK97|SLC35E2A;ENST00000481276.1_1_1:1602946-1608282:-|nuORF	ENSG00000189339|ENST00000617444|SLC35E2B	ENSG00000189339|ENST00000617444|SLC35E2B	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.8104858398438	2	514.81227	1027.60999	0.21733	0.00011188	-3.986	-0.002052	-3.7687	-0.0019402	514.8099201928084	115.09	2.1184	113.69	112.99	115.11	-1.3977					90	41	5	0	0	0	0.33376	1	10752	10752		76.774	12.567	1	518660			60043	8551	49528	49574	65841	65841					0.09728734644750148
VIGESTLLTL	10	Unmodified	_VIGESTLLTL_					0	0	0			REV__ENSG00000120008|ENST00000263461|WDR11	REV__ENSG00000120008|ENST00000263461|WDR11	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.3238525390625	2	523.310615	1044.60668	0.964	0.00050447	-0.79679	-0.00041697	0.1672	8.7498E-05	523.3099189461428	131.08	0.74696	130.86	130.5	131.25	-0.22696					22	14	2	0	0	0	0.026688	1	12915	12915		40.778	5.5774	1	14425	+		60044	18480	49529	49575	65842	65842					0.08615763071725269
VIGGFHLLE	9	Unmodified	_VIGGFHLLE_					0	0	0		tr|A0A553SU10|A0A553SU10_NIACIMBLfoldmetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_06095PE=4SV=1	tr|A0A553SU10|A0A553SU10_NIACIMBLfoldmetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_06095PE=4SV=1	tr|A0A553SU10|A0A553SU10_NIACIMBLfoldmetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_06095PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.7778625488281	2	492.779285	983.544017	0.050489	2.488E-05	-4.1704	-0.0020551	-4.1199	-0.0020302	492.7770261100685	76.331	1.8631	73.392	72.985	74.848	-2.9389					78	38	3	0	0	0	0.45513	1	6083	6083		46.766	7.9603	1	1161800			60045	34560	49530	49576	65843	65843					0.05158661794177988
VIGGKWKP	8	Unmodified	_VIGGKWKP_					0	0	0		tr|A0A7D6ZVA8|A0A7D6ZVA8_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03235PE=4SV=1	tr|A0A7D6ZVA8|A0A7D6ZVA8_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03235PE=4SV=1	tr|A0A7D6ZVA8|A0A7D6ZVA8_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03235PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	441.7861328125	2	442.771263	883.527973	0.085586	3.7895E-05	0.53578	0.00023723	0.62137	0.00027512	442.771155906057	102.93	0.89066	101.41	101.1	101.99	-1.5211					24	16	2	0	0	0	0.028476	1	7129	7129		8.8223	0	1	13841			60046	35798	49531	49577	65844	65844					0.08155000347937857
VIGHHIHA	8	Unmodified	_VIGHHIHA_					0	0	0			REV__L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|185|3|sense	REV__L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|185|3|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.7590026855469	2	442.248486	882.48242	0.92486	0.00040902	-3.165	-0.0013997	-2.2401	-0.00099068	442.2470835887968	97.076	0.84801	94.651	94.118	94.966	-2.4256					36	16	3	0	0	0	0.028476	1	8562	8562		24.504	0	1	75412	+		60047	28532	49532	49578	65845	65845					0.036477748855645586
VIGIKKPTENI	11	Unmodified	_VIGIKKPTENI_					0	0	0		tr|A0A7D6ZYS4|A0A7D6ZYS4_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_17565PE=4SV=1	tr|A0A7D6ZYS4|A0A7D6ZYS4_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_17565PE=4SV=1	tr|A0A7D6ZYS4|A0A7D6ZYS4_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_17565PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3707885742188	2	606.371538	1210.72852	-2.264	-0.0013728	-1.0272	-0.00062285	-3.2912	-0.0019957	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.70142	1	12621	12621		29.17	4.6509	1	205770			60048	35929	49533	49579	65846	65846					0.13158805154080255
VIGITGDPAEI	11	Unmodified	_VIGITGDPAEI_					0	0	0		tr|A0A553STJ0|A0A553STJ0_NIACICarbohydratediacidregulatorOS=NialliacirculansOX=1397GN=CEQ21_05100PE=3SV=1	tr|A0A553STJ0|A0A553STJ0_NIACICarbohydratediacidregulatorOS=NialliacirculansOX=1397GN=CEQ21_05100PE=3SV=1	tr|A0A553STJ0|A0A553STJ0_NIACICarbohydratediacidregulatorOS=NialliacirculansOX=1397GN=CEQ21_05100PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	542.7977294921875	2	542.797872	1083.58119	0.86019	0.00046691	0.29504	0.00016015	1.1552	0.00062706	542.7978567793076	153.16	2.0687	153.16	152.45	154.52	0					102	45	3	0	0	0	0.68263	1	17930	17930		35.618	0.46626	1	105310			60049	34494	49534	49580	65847	65847					0.042742885492771165
VIGNTSALP	9	Unmodified	_VIGNTSALP_					0	0	0		OR1A2|p.L233Pfs*27|1|0.1|ENSG00000172150|chr17:3198215-3198224|CTATTCAAAG/-|frameshift_variant;ENSG00000172150|ENST00000381951|OR1A2	OR1A2|p.L233Pfs*27|1|0.1|ENSG00000172150|chr17:3198215-3198224|CTATTCAAAG/-|frameshift_variant	OR1A2|p.L233Pfs*27|1|0.1|ENSG00000172150|chr17:3198215-3198224|CTATTCAAAG/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	436.2491760253906	2	436.247818	870.481082	0.44557	0.00019438	-0.24406	-0.00010647	0.20151	8.7908E-05	436.24760929436394	50.959	1.1893	50.959	50.64	51.829	0					61	27	4	0	0	0	0.16524	1	3911	3911		82.305	4.9875	1	4993700			60050	7269	49535	49581	65848	65848					0.04066096006135922
VIGQMFGWRA	10	Unmodified	_VIGQMFGWRA_					0	0	0		tr|A0A7D6VYV8|A0A7D6VYV8_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17960PE=4SV=1	tr|A0A7D6VYV8|A0A7D6VYV8_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17960PE=4SV=1	tr|A0A7D6VYV8|A0A7D6VYV8_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17960PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	582.80224609375	2	582.802768	1163.59098	1.1315	0.00065944	-3.6047	-0.0021008	-2.4732	-0.0014414	582.8006818033648	147.53	6.6763	147.53	147.01	153.69	0					349	139	4	0	0	0	0.66721	1	17645	17645		34.173	1.422	1	20317000			60051	35340	49536	49582	65849	65849					0.015731980736973128
VIGSLPAHLS	10	Unmodified	_VIGSLPAHLS_					0	0	0		ENST00000442865.1_1_7:29638488-29724509:-|nuORF;ENST00000426767.1_1_7:29690917-29724509:-|nuORF;ENST00000459998.1_1_7:30325231-30328375:+|nuORF;ENSG00000180233|ENST00000323037|ZNRF2	ENST00000442865.1_1_7:29638488-29724509:-|nuORF	ENST00000442865.1_1_7:29638488-29724509:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.8018798828125	2	497.290017	992.565481	1.1532	0.00057348	1.041	0.00051767	2.1942	0.0010911	497.29050287726074	111.39	0.45296	111.39	111.24	111.7	0					12	9	2	0	0	0	0.026752	1	12684	12684		14.865	0	1	135900			60052	7862	49537	49583	65850	65850					0.06890046822900331
VIGSSFEFI	9	Unmodified	_VIGSSFEFI_					0	0	0			REV__ENSG00000133962|ENST00000256343|CATSPERB	REV__ENSG00000133962|ENST00000256343|CATSPERB	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.7651672363281	2	499.7633	997.512048	-1.053	-0.00052626	4.0977	0.0020479	3.0447	0.0015216	499.76572667649543	127.6	4.5409	126.16	125.39	129.93	-1.4357					197	90	5	0	0	0	0.34496	1	12238	12238		57.811	1.0902	1	12586000	+		60053	19164	49538	49584	65851	65851					0.013192493203860067
VIGVFFWFY	9	Unmodified	_VIGVFFWFY_					0	0	0			REV__tr|A0A553SPP3|A0A553SPP3_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_26770PE=4SV=1	REV__tr|A0A553SPP3|A0A553SPP3_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_26770PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3049926757812	2	589.307678	1176.6008	0.1981	0.00011674	-3.5096	-0.0020682	-3.3115	-0.0019515	589.3055016640016	123.01	1.6103	121.97	121.47	123.08	-1.0377					75	30	4	0	0	0	0.42921	1	9482	9482		49.211	3.2385	1	176050	+		60054	30558	49539	49585	65852	65852					0.0195670935072485
VIGVVRNEL	9	Unmodified	_VIGVVRNEL_					0	0	0			REV__ENST00000317287.5_1_12:56224102-56224336:-|nuORF	REV__ENST00000317287.5_1_12:56224102-56224336:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.7647399902344	2	499.803291	997.59203	-1.1931	-0.00059631	-3.3903	-0.0016945	-4.5834	-0.0022908	499.8018551794955	127.62	0.50551	126.18	125.94	126.45	-1.4357					22	9	3	0	0	0	0.027441	1	12166	12166		68.787	12.066	1	35341	+		60055	24412	49540	49586	65853	65853					0.09313735714226823
VIHKVKMGK	9	Unmodified	_VIHKVKMGK_					0	0	0			REV__tr|A0A7D7A297|A0A7D7A297_9CLOTCadmiumresistancetransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_15895PE=4SV=1	REV__tr|A0A7D7A297|A0A7D7A297_9CLOTCadmiumresistancetransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_15895PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.3125	2	520.325879	1038.63721	1.9289	0.0010036	1.7251	0.00089762	3.654	0.0019013	520.3267389081442	80.549	0.43155	80.549	80.354	80.786	0					13	9	2	0	0	0	0.027462	1	8284	8284		19.36	6.4008	1	303890	+		60056	32529	49541	49587	65854	65854					0.11943262975773905
VIHNLLFMT	9	Unmodified	_VIHNLLFMT_					0	0	0			REV__DSEL|p.A1119Sfs*13|1|0.11|ENSG00000171451|chr18:67511285-67511286|-/A|frameshift_variant	REV__DSEL|p.A1119Sfs*13|1|0.11|ENSG00000171451|chr18:67511285-67511286|-/A|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.821044921875	2	544.30207	1086.58959	1.3614	0.00074102	-3.1238	-0.0017003	-1.7624	-0.00095929	544.8028994304314	74.643	0.76268	74.643	74.324	75.087	0					34	18	3	0	0	0	0.027462	1	7444	7444		17.365	0	1	388430	+		60057	16339	49542	49588	65855	65855					0.04975563984908149
VIHPDFRM	8	Unmodified	_VIHPDFRM_					0	0	0		nc|ENSG00000102763|A3KMH1-2|VWA8;nc|ENSG00000102763|A3KMH1-3|VWA8;ENSG00000102763|ENST00000379310|VWA8	nc|ENSG00000102763|A3KMH1-2|VWA8	nc|ENSG00000102763|A3KMH1-2|VWA8	MULTI-MSMS	OvCa9_classI_Rep2	2	507.763427734375	2	507.763112	1013.51167	0.48571	0.00024663	-1.1787	-0.0005985	-0.69299	-0.00035187	507.76242082287587	126.44	3.901	126.2	123.43	127.33	-0.2359					157	78	4	0	0	0	0.61758	1	12329	12329		60.294	0	1	953460			60058	2252	49543	49589	65856	65856					0.005455511195464169
VIHTHPDIL	9	Unmodified	_VIHTHPDIL_					0	0	0			REV__tr|A0A553SS59|A0A553SS59_NIACIImidazolonepropionaseOS=NialliacirculansOX=1397GN=hutIPE=3SV=1	REV__tr|A0A553SS59|A0A553SS59_NIACIImidazolonepropionaseOS=NialliacirculansOX=1397GN=hutIPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.798583984375	2	522.795466	1043.57638	-0.43864	-0.00022932	2.8502	0.0014901	2.4115	0.0012607	522.7969484658958	59.021	1.2408	55.629	55.35	56.591	-3.392					45	24	2	0	0	0	0.52083	1	3922	3922		40.573	1.7665	1	778790	+		60059	30805	49544	49590	65857	65857					0.056334491971938405
VIHTHPDIL	9	Unmodified	_VIHTHPDIL_					0	0	0			REV__tr|A0A553SS59|A0A553SS59_NIACIImidazolonepropionaseOS=NialliacirculansOX=1397GN=hutIPE=3SV=1	REV__tr|A0A553SS59|A0A553SS59_NIACIImidazolonepropionaseOS=NialliacirculansOX=1397GN=hutIPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	522.795466	1043.57638	-0.12464	-6.5161E-05	2.6585	0.0013898	2.5338	0.0013247	522.7968519528712	58.444	1.3779	55.664	55.285	56.662	-2.7801	0.017487	-0.00010792	NaN	40.573	47	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243710	+		60060	30805	49544	49590							0.056334491971938405
VIHTHPDIL	9	Unmodified	_VIHTHPDIL_					0	0	0			REV__tr|A0A553SS59|A0A553SS59_NIACIImidazolonepropionaseOS=NialliacirculansOX=1397GN=hutIPE=3SV=1	REV__tr|A0A553SS59|A0A553SS59_NIACIImidazolonepropionaseOS=NialliacirculansOX=1397GN=hutIPE=3SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	522.795466	1043.57638	-0.43864	-0.00022932	2.8502	0.0014901	2.4115	0.0012607	522.7969484658958	59.021	1.2408	55.629	55.35	56.591	-3.392	-0.017487	9.2539E-05	NaN	40.573	45	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	778790	+		60061	30805	49544	49590							0.056334491971938405
VIIDPEVL	8	Unmodified	_VIIDPEVL_					0	0	0		tr|A0A7D7AF59|A0A7D7AF59_9CLOT3-dehydroquinatesynthaseOS=ClostridiumintestinaleOX=36845GN=aroBPE=3SV=1	tr|A0A7D7AF59|A0A7D7AF59_9CLOT3-dehydroquinatesynthaseOS=ClostridiumintestinaleOX=36845GN=aroBPE=3SV=1	tr|A0A7D7AF59|A0A7D7AF59_9CLOT3-dehydroquinatesynthaseOS=ClostridiumintestinaleOX=36845GN=aroBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	449.2681884765625	2	449.268219	896.521884	3.2258	0.0014492	-1.8722	-0.00084112	1.3536	0.00060812	449.26732371902864	112.43	2.5171	112.3	111.93	114.45	-0.12174					121	50	4	0	0	0	0.64377	1	10685	10685		54.765	0	1	1472600			60062	36251	49545	49591	65858	65858					0.06948437325752366
VIIEVPEPSG	10	Unmodified	_VIIEVPEPSG_					0	0	0		tr|A0A7D6VZE4|A0A7D6VZE4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19330PE=4SV=1	tr|A0A7D6VZE4|A0A7D6VZE4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19330PE=4SV=1	tr|A0A7D6VZE4|A0A7D6VZE4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19330PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.3123168945312	2	520.28714	1038.55973	1.8463	0.00096061	3.6539	0.0019011	5.5002	0.0028617	520.2890865788104	80.053	0.79852	80.053	79.987	80.786	0					30	18	2	0	0	0	0.026822	1	8260	8260		38.806	16.846	1	1893100			60063	35357	49546	49592	65859	65859					0.0419890352056882
VIIGDYNYAF	10	Unmodified	_VIIGDYNYAF_					0	0	0		tr|A0A7D6VT89|A0A7D6VT89_9CLOTATP-dependentDNAhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01885PE=3SV=1	tr|A0A7D6VT89|A0A7D6VT89_9CLOTATP-dependentDNAhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01885PE=3SV=1	tr|A0A7D6VT89|A0A7D6VT89_9CLOTATP-dependentDNAhelicaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01885PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	587.7932739257812	2	587.792589	1173.57063	1.9612	0.0011528	-2.8486	-0.0016744	-0.8874	-0.00052161	587.7907612515596	106.02	0.70128	106.02	105.83	106.54	0					33	15	4	0	0	0	0.65434	1	11930	11930		35.618	1.5318	1	930290			60064	35098	49547	49593	65860	65860					-0.009216941051590766
VIIGSELKQKL	11	Unmodified	_VIIGSELKQKL_					0	0	0			REV__tr|A0A553SKF9|A0A553SKF9_NIACIAlanine--tRNAligaseOS=NialliacirculansOX=1397GN=alaSPE=3SV=1	REV__tr|A0A553SKF9|A0A553SKF9_NIACIAlanine--tRNAligaseOS=NialliacirculansOX=1397GN=alaSPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	614.385498046875	2	614.387188	1226.75982	-5.2638	-0.003234	1.9349	0.0011888	-3.3289	-0.0020452	614.3881829227306	157.6	1.278	156.06	155.71	156.98	-1.545					89	35	4	0	0	0	0.72466	1	15569	15569		19.997	0.89325	1	332270	+		60065	30120	49548	49594	65861	65861					0.15551378188183662
VIIGSKVALL	10	Unmodified	_VIIGSKVALL_					0	0	0			REV__tr|A0A7D6VTJ9|A0A7D6VTJ9_9CLOTCarbohydrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02740PE=4SV=1	REV__tr|A0A7D6VTJ9|A0A7D6VTJ9_9CLOTCarbohydrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_02740PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.3254089355469	2	506.841885	1011.66922	-0.7012	-0.0003554	-1.3471	-0.00068274	-2.0483	-0.0010381	506.8409545606878	77.187	0.87385	74.371	74.096	74.97	-2.8165					49	17	4	0	0	0	0.026665	1	6131	6131		51.335	3.6781	1	417430	+		60066	31608	49549	49595	65862	65862					0.16384953930560187
VIIHQNNRP	9	Unmodified	_VIIHQNNRP_					0	0	0			REV__tr|A0A7D6VRA1|A0A7D6VRA1_9CLOTCarboxypeptidaseregulatory-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18615PE=3SV=1	REV__tr|A0A7D6VRA1|A0A7D6VRA1_9CLOTCarboxypeptidaseregulatory-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18615PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.352783203125	2	545.809439	1089.60433	1.1506	0.00062801	1.8807	0.0010265	3.0313	0.0016545	545.810363765823	144.44	0.58365	144.44	144.16	144.74	0					17	11	2	0	0	0	0.027462	1	16897	16897		31.955	6.3808	1	91069	+		60067	31398	49550	49596	65863	65863					0.06310772177266699
VIIHTTSGEV	10	Unmodified	_VIIHTTSGEV_					0	0	0			REV__tr|A0A553SQC0|A0A553SQC0_NIACIAcyl-CoAthioesteraseOS=NialliacirculansOX=1397GN=CEQ21_23375PE=3SV=1	REV__tr|A0A553SQC0|A0A553SQC0_NIACIAcyl-CoAthioesteraseOS=NialliacirculansOX=1397GN=CEQ21_23375PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	528.291748046875	2	528.290214	1054.56587	2.1433	0.0011323	-0.33444	-0.00017668	1.8089	0.00095561	528.2900671712318	86.911	1.034	86.911	86.594	87.628	0					44	24	3	0	0	0	0.50656	1	9168	9168		53.351	0.41475	1	3371300	+		60068	30622	49551	49597	65864	65864					0.040774217520947786
VIIHTTSGEV	10	Unmodified	_VIIHTTSGEV_					0	0	0			REV__tr|A0A553SQC0|A0A553SQC0_NIACIAcyl-CoAthioesteraseOS=NialliacirculansOX=1397GN=CEQ21_23375PE=3SV=1	REV__tr|A0A553SQC0|A0A553SQC0_NIACIAcyl-CoAthioesteraseOS=NialliacirculansOX=1397GN=CEQ21_23375PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	528.290214	1054.56587	-0.80266	-0.00042404	0.06084	3.2141E-05	-0.74182	-0.0003919	528.2905465085059	89.328	1.3605	87.197	86.798	88.158	-2.1309	0.11538	0.00016772	NaN	53.351	34	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	407570	+		60069	30622	49551	49597							0.040774217520947786
VIIIGLAFVSM	11	Unmodified	_VIIIGLAFVSM_					0	0	0			REV__ENSG00000204704|ENST00000377175|OR2W1	REV__ENSG00000204704|ENST00000377175|OR2W1	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.76953125	2	581.848853	1161.68315	0.89511	0.00052082	-1.0174	-0.00059199	-0.12233	-7.1175E-05	581.8481384732736	146.17	0.841	146.17	145.88	146.72	0					36	16	3	0	0	0	0.026099	1	17161	17161		26.693	6.6961	1	60873	+		60070	23182	49552	49598	65865	65865					0.10877863367318241
VIIIHAVD	8	Unmodified	_VIIIHAVD_					0	0	0		ENSG00000124215|ENST00000348616|CDH26;nc|ENSG00000124215|Q8IXH8-1|CDH26	ENSG00000124215|ENST00000348616|CDH26	ENSG00000124215|ENST00000348616|CDH26	MULTI-MSMS	OvCa9_classI_Rep2	2	440.2675476074219	2	440.268553	878.522553	-2.654	-0.0011685	2.3745	0.0010454	-0.27952	-0.00012306	440.26950058570867	153.36	0.68338	153.13	152.88	153.56	-0.22696					26	17	2	0	0	0	0.74816	1	15602	15602		15.636	0.97212	1	20899			60071	3635	49553	49599	65866	65866					0.07843276765458995
VIIIHPGKGT	10	Unmodified	_VIIIHPGKGT_					0	0	0		nc|ENSG00000079215|P43003-2|SLC1A3;ENSG00000079215|ENST00000265113|SLC1A3	nc|ENSG00000079215|P43003-2|SLC1A3	nc|ENSG00000079215|P43003-2|SLC1A3	MULTI-MSMS	OvCa9_classI_Rep3	3	517.8197631835938	2	517.821484	1033.62842	-3.1809	-0.0016471	-0.94149	-0.00048752	-4.1224	-0.0021347	517.8208401920543	146.89	1.3501	145.93	145.54	146.89	-0.95947					60	26	3	0	0	0	0.73378	1	12369	12369		26.693	4.733	1	132640			60072	1606	49554	49600	65867	65867					0.1129461261095912
VIIIIDLGE	9	Unmodified	_VIIIIDLGE_					0	0	0			REV__tr|A0A7D6VQ12|A0A7D6VQ12_9CLOTPatatin-likephospholipasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01050PE=4SV=1	REV__tr|A0A7D6VQ12|A0A7D6VQ12_9CLOTPatatin-likephospholipasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01050PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.8028869628906	2	492.802426	983.590298	0.31013	0.00015283	-3.6079	-0.001778	-3.2978	-0.0016251	492.8006535263743	57.337	1.4719	53.992	53.527	54.999	-3.3449					50	28	2	0	0	0	0.53957	1	3703	3703		38.806	1.647	1	1133100	+		60073	31292	49555	49601	65868	65868					0.09784681905625803
VIIIPPEKL	9	Unmodified	_VIIIPPEKL_					0	0	0			REV__ENSG00000181555|ENST00000409792|SETD2;REV__SETD2|p.E983Kfs*23|1|0.1|ENSG00000181555|chr3:47121689-47121689|C/-|frameshift_variant	REV__SETD2|p.E983Kfs*23|1|0.1|ENSG00000181555|chr3:47121689-47121689|C/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.270263671875	2	511.336436	1020.65832	1.806	0.00092348	0.63059	0.00032245	2.4366	0.0012459	511.3366722714009	127.88	0.79205	127.88	127.67	128.47	0					27	16	2	0	0	0	0.027462	1	14838	14838		51.335	16.135	1	115660	+		60074	22239;29354	49556	49602	65869	65869					0.14881551556277373
VIIIPPEKL	9	Unmodified	_VIIIPPEKL_					0	0	0			REV__ENSG00000181555|ENST00000409792|SETD2;REV__SETD2|p.E983Kfs*23|1|0.1|ENSG00000181555|chr3:47121689-47121689|C/-|frameshift_variant	REV__SETD2|p.E983Kfs*23|1|0.1|ENSG00000181555|chr3:47121689-47121689|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	511.33538818359375	2	511.336436	1020.65832	0.67261	0.00034393	-0.86721	-0.00044344	-0.19461	-9.9509E-05	511.33582601620805	126.08	1.3814	125.85	125.5	126.89	-0.23589					66	27	4	0	0	0	0.29717	1	12299	12299		63.306	0	1	172330	+		60075	22239;29354	49556	49602	65870	65870					0.14881551556277373
VIIIPPEKL	9	Unmodified	_VIIIPPEKL_					0	0	0			REV__ENSG00000181555|ENST00000409792|SETD2;REV__SETD2|p.E983Kfs*23|1|0.1|ENSG00000181555|chr3:47121689-47121689|C/-|frameshift_variant	REV__SETD2|p.E983Kfs*23|1|0.1|ENSG00000181555|chr3:47121689-47121689|C/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	511.336436	1020.65832	-1.284	-0.00065654	1.0372	0.00053036	-0.24678	-0.00012619	511.3367947979322	127.3	1.1635	125.86	125.49	126.66	-1.4357	-0.023257	0.0014684	NaN	63.306	58	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	233180	+		60076	22239;29354	49556	49602							0.14881551556277373
VIIISHKKGR	10	Unmodified	_VIIISHKKGR_					0	0	0			REV__tr|A0A553SQ45|A0A553SQ45_NIACIATP-dependent6-phosphofructokinaseOS=NialliacirculansOX=1397GN=pfkAPE=3SV=1	REV__tr|A0A553SQ45|A0A553SQ45_NIACIATP-dependent6-phosphofructokinaseOS=NialliacirculansOX=1397GN=pfkAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.8516845703125	2	575.874582	1149.73461	-0.85396	-0.00049177	2.7457	0.0015812	1.8917	0.0010894	575.8761514484603	89.158	0.24294	86.555	86.385	86.628	-2.6027					8	4	2	0	0	0	0.027284	1	7644	7644		14.865	11.455	1	23168	+		60077	30605	49557	49603	65871	65871					0.16573368176273107
VIIIVLCTFIF	11	Unmodified	_VIIIVLCTFIF_					0	0	0			REV__tr|A0A7D6ZX89|A0A7D6ZX89_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22080PE=4SV=1	REV__tr|A0A7D6ZX89|A0A7D6ZX89_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22080PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	640.8895263671875	2	640.887978	1279.7614	4.2244	0.0027074	-1.2746	-0.00081689	2.9498	0.0018905	640.8870407090299	132.38	1.5362	130.88	130.54	132.07	-1.5015					82	30	4	0	0	0	0.65947	1	12738	12738		39.253	7.6186	1	355310	+		60078	32321	49558	49604	65872	65872					0.13271295952563378
VIIKQPIPL	9	Unmodified	_VIIKQPIPL_					0	0	0			REV__tr|A0A7D6ZFV8|A0A7D6ZFV8_9CLOTPatatin-likephospholipasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16645PE=4SV=1	REV__tr|A0A7D6ZFV8|A0A7D6ZFV8_9CLOTPatatin-likephospholipasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16645PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	510.84454345703125	2	510.844428	1019.6743	0.099341	5.0748E-05	-0.6189	-0.00031616	-0.51956	-0.00026541	510.8440612216227	123.45	4.7392	123.21	122.74	127.48	-0.23193					211	95	5	0	0	0	0.32337	1	12066	12066		60.294	2.4827	1	2560200	+		60079	31984	49559	49605	65873	65873					0.1652525779318239
VIIKVQNAR	9	Unmodified	_VIIKVQNAR_					0	0	0			REV__ENSG00000139910|ENST00000539517|NOVA1	REV__ENSG00000139910|ENST00000539517|NOVA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2755737304688	2	520.832383	1039.65021	-0.4849	-0.00025255	-0.23815	-0.00012404	-0.72305	-0.00037659	520.832482832496	72.948	0.27171	72.948	72.764	73.035	0					11	6	2	0	0	0	0.027417	1	7141	7141		45.952	0	1	219170	+		60080	19642	49560	49606	65874	65874					0.13197417359515384
VIILKSLAKV	10	Unmodified	_VIILKSLAKV_					0	0	0			REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.3579652635712427|0.3175433071941228|2.1|429.0|123|3|anti-sense	REV__L1MCa_dup1455|chr3:161109768-161111719:+|1.3579652635712427|0.3175433071941228|2.1|429.0|123|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.741943359375	2	542.378635	1082.74272	0.20067	0.00010884	0.47003	0.00025494	0.6707	0.00036377	542.3787235487443	73.774	0.3101	73.774	73.597	73.907	0					12	7	2	0	0	0	0.027088	1	7272	7272		26.693	5.746	1	431290	+		60081	28425	49561	49607	65875	65875					0.20465502373008349
VIILTCLLM	9	Unmodified	_VIILTCLLM_					0	0	0		tr|A0A553SMQ5|A0A553SMQ5_NIACILycopenecyclasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22970PE=4SV=1	tr|A0A553SMQ5|A0A553SMQ5_NIACILycopenecyclasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22970PE=4SV=1	tr|A0A553SMQ5|A0A553SMQ5_NIACILycopenecyclasedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22970PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8035888671875	2	509.805599	1017.59665	-0.41042	-0.00020923	-3.1769	-0.0016196	-3.5873	-0.0018288	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.59983	1	13505	13505		31.955	6.5047	1	150140			60082	33862	49562	49608	65876	65876					0.08855160541133955
VIIMFGLVI	9	Oxidation (M)	_VIIM(Oxidation (M))FGLVI_		VIIM(1)FGLVI		VIIM(49)FGLVI	0	0	1			REV__nc|ENSG00000197822|Q16625-3|OCLN	REV__nc|ENSG00000197822|Q16625-3|OCLN	MULTI-MSMS	OvCa9_classI_Rep3	3	510.81488037109375	2	510.811739	1019.60893	0.66578	0.00034009	2.7619	0.0014108	3.4277	0.0017509	510.81303107097773	129.05	1.0381	127.95	127.51	128.55	-1.1018					49	20	3	0	0	0	0.42921	1	10200	10200		49.211	6.7363	1	128600	+		60083	22953	49563	49609	65877	65877		533			0.09990520275835024
VIIMLLLAHW	10	Unmodified	_VIIMLLLAHW_					0	0	0		ENST00000401050.7_1_1:53133125-53134458:+|nuORF	ENST00000401050.7_1_1:53133125-53134458:+|nuORF	ENST00000401050.7_1_1:53133125-53134458:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	604.8641357421875	2	604.864837	1207.71512	1.4861	0.00089888	2.8379	0.0017165	4.324	0.0026154	604.8665892229517	146.4	0.64099	146.4	146.08	146.72	0					33	12	4	0	0	0	0.75313	1	17123	17123		35.201	26.966	1	66969			60084	11414	49564	49610	65878	65878					0.11957275841155024
VIIMMKVVK	9	Unmodified	_VIIMMKVVK_					0	0	0			REV__ENSG00000169836|ENST00000304883|TACR3	REV__ENSG00000169836|ENST00000304883|TACR3	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.2781982421875	2	530.834691	1059.65483	2.2662	0.001203	-0.67056	-0.00035595	1.5956	0.00084701	530.8345883704908	82.565	0.72697	82.565	82.222	82.949	0					37	16	3	0	0	0	0.027462	1	8526	8526		37.159	12.956	1	622500	+		60085	21486	49565	49611	65879	65879					0.1273884218639978
VIIPIINSI	9	Unmodified	_VIIPIINSI_					0	0	0			REV__tr|A0A553SNB1|A0A553SNB1_NIACIPTS2-O-a-mannosyl-D-glyceratetransportersubunitIIABCOS=NialliacirculansOX=1397GN=CEQ21_24110PE=4SV=1	REV__tr|A0A553SNB1|A0A553SNB1_NIACIPTS2-O-a-mannosyl-D-glyceratetransportersubunitIIABCOS=NialliacirculansOX=1397GN=CEQ21_24110PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	491.3221740722656	2	491.320786	980.627018	2.0782	0.0010211	0.10871	5.3413E-05	2.187	0.0010745	491.32069839029094	108.3	0.60178	108.3	108.07	108.67	0					32	13	3	0	0	0	0.16562	1	12235	12235		82.241	7.9855	1	1457900	+		60086	30405	49566	49612	65880	65880					0.1359297852217196
VIIPIINSI	9	Unmodified	_VIIPIINSI_					0	0	0			REV__tr|A0A553SNB1|A0A553SNB1_NIACIPTS2-O-a-mannosyl-D-glyceratetransportersubunitIIABCOS=NialliacirculansOX=1397GN=CEQ21_24110PE=4SV=1	REV__tr|A0A553SNB1|A0A553SNB1_NIACIPTS2-O-a-mannosyl-D-glyceratetransportersubunitIIABCOS=NialliacirculansOX=1397GN=CEQ21_24110PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	491.320786	980.627018	2.0782	0.0010211	0.10871	5.3413E-05	2.187	0.0010745	491.32069839029094	108.3	0.60178	108.3	108.07	108.67	0	0	0	NaN	82.241	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1457900	+		60087	30405	49566	49612							0.1359297852217196
VIIQKKEKL	9	Unmodified	_VIIQKKEKL_					0	0	0			REV__tr|A0A7D7A5L2|A0A7D7A5L2_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06535PE=4SV=1	REV__tr|A0A7D7A5L2|A0A7D7A5L2_9CLOTAAAfamilyATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06535PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.7933959960938	2	549.865892	1097.71723	1.576	0.00086659	0.61146	0.00033622	2.1875	0.0012028	549.8661110841896	116.65	0.62526	116.65	116.46	117.09	0					20	13	2	0	0	0	0.027462	1	13325	13325		21.96	0	1	162630	+		60088	32639	49567	49613	65881	65881					0.17228027850592298
VIISQILFIPV	11	Unmodified	_VIISQILFIPV_					0	0	0			REV__chr2:182748376-182751658|104|12.19|0.28|5.42|+|2|TE_info:L1PA3,L1PA3_dup1364,L1,LINE,donor,-,182745742,182748376|None,DNAJC10|4	REV__chr2:182748376-182751658|104|12.19|0.28|5.42|+|2|TE_info:L1PA3,L1PA3_dup1364,L1,LINE,donor,-,182745742,182748376|None,DNAJC10|4	MULTI-MSMS	OvCa9_classI_Rep2	2	621.3980712890625	2	621.397025	1240.7795	-5.5953	-0.0034769	2.4426	0.0015179	-3.1526	-0.001959	621.3985001848658	162.79	0.23622	162.57	162.4	162.64	-0.22696					15	4	5	0	0	0	0.72473	1	16584	16584		19.104	0	1	1093900	+		60089	15994	49568	49614	65882	65882					0.16873754198923052
VIISSYFAD	9	Unmodified	_VIISSYFAD_					0	0	0			REV__ENSG00000198678|ENST00000328207|OR5BS1P	REV__ENSG00000198678|ENST00000328207|OR5BS1P	MULTI-MSMS	OvCa9_classI_Rep3	3	507.7626037597656	2	507.760758	1013.50696	0.78302	0.00039759	3.1816	0.0016155	3.9646	0.0020131	507.76227016858786	127.25	3.6353	126.18	123.46	127.1	-1.0715					121	69	3	0	0	0	0.44294	1	9979	9979		47.916	0.25827	1	658450	+		60090	23042	49569	49615	65883	65883					0.0007494545775443839
VIITDKKP	8	Unmodified	_VIITDKKP_					0	0	0		tr|A0A7D7A631|A0A7D7A631_9CLOTDeoR/GlpRtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08675PE=4SV=1	tr|A0A7D7A631|A0A7D7A631_9CLOTDeoR/GlpRtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08675PE=4SV=1	tr|A0A7D7A631|A0A7D7A631_9CLOTDeoR/GlpRtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08675PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.2316589355469	2	457.289485	912.564418	0.32537	0.00014879	0.0090741	4.1495E-06	0.33445	0.00015294	457.28934999875514	112.08	0.57687	110.57	110.42	111	-1.5111					18	10	2	0	0	0	0.028476	1	10390	10390		33.516	0	1	18364			60091	36182	49570	49616	65884	65884					0.10463832454001931
VIITSDDRY	9	Unmodified	_VIITSDDRY_					0	0	0			REV__PDP1|p.I518S|1|0.24|ENSG00000164951|chr8:93923612-93923612|T/G|missense_variant	REV__PDP1|p.I518S|1|0.24|ENSG00000164951|chr8:93923612-93923612|T/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.2876586914062	2	541.279846	1080.54514	1.2116	0.0006558	1.0685	0.00057834	2.28	0.0012341	541.7822903675792	145.9	0.35037	145.9	145.73	146.08	0					10	6	2	0	0	0	0.027462	1	17072	17072		53.351	7.3792	1	13550	+		60092	29285	49571	49617	65885	65885					0.008088313724329055
VIITSQLLP	9	Unmodified	_VIITSQLLP_					0	0	0			REV__ENSG00000131558|ENST00000253861|EXOC4	REV__ENSG00000131558|ENST00000253861|EXOC4	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.8007507324219	2	492.310418	982.606283	-0.40014	-0.00019699	-2.6736	-0.0013162	-3.0737	-0.0015132	492.3089485699103	55.456	1.888	52.642	51.972	53.86	-2.8139					68	37	3	0	0	0	0.027461	1	3995	3995		58.782	21.623	1	107680	+		60093	19022	49572	49618	65886	65886					0.11428388142508084
VIIVGNKGDL	10	Unmodified	_VIIVGNKGDL_					0	0	0		ENSG00000122035|ENST00000241463|RASL11A	ENSG00000122035|ENST00000241463|RASL11A	ENSG00000122035|ENST00000241463|RASL11A	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.3130493164062	2	514.310949	1026.60735	-0.82174	-0.00042263	0.017687	9.0967E-06	-0.80406	-0.00041353	514.310966463184	52.835	1.8731	49.627	49.4	51.273	-3.208					72	36	2	0	0	0	0.48198	1	3226	3226		56.721	1.9447	1	2119300			60094	3514	49573	49619	65887	65887					0.09510602511431898
VIIVGNLN	8	Unmodified	_VIIVGNLN_					0	0	0		ENSG00000145794|ENST00000503335|MEGF10	ENSG00000145794|ENST00000503335|MEGF10	ENSG00000145794|ENST00000503335|MEGF10	MULTI-MSMS	OvCa9_classI_Rep2	2	421.25927734375	2	421.260728	840.506903	0.1688	7.111E-05	-3.1201	-0.0013144	-2.9513	-0.0012433	421.2592965587955	134.89	1.4682	134.66	133.66	135.13	-0.22696					55	29	3	0	0	0	0.74971	1	13379	13379		26.796	1.3459	1	378840			60095	5245	49574	49620	65888	65888					0.0802699024843605
VIIVSELGDK	10	Unmodified	_VIIVSELGDK_					0	0	0		ENST00000502797.1_1_4:56269487-56278062:+|nuORF;nc|ENSG00000134851|Q9HC07-2|TMEM165;ENST00000508404.5_1_4:56269487-56291616:+|nuORF;ENSG00000134851|ENST00000381334|TMEM165	ENST00000502797.1_1_4:56269487-56278062:+|nuORF	ENST00000502797.1_1_4:56269487-56278062:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.8186645507812	2	536.816064	1071.61758	0.21032	0.0001129	3.5293	0.0018946	3.7396	0.0020075	536.8177736754573	67.975	1.5176	64.485	64.136	65.654	-3.4902					80	30	5	0	0	0	0.59703	1	5018	5018		42.396	0	1	1357400			60096	4337	49575	49621	65889	65889					0.08463165446005405
VIKAVFTRG	9	Unmodified	_VIKAVFTRG_					0	0	0			REV__ENSG00000072195|ENST00000312358|SPEG	REV__ENSG00000072195|ENST00000312358|SPEG	MULTI-SECPEP	OvCa9_classI_Rep2	2	495.7527770996094	2	495.808377	989.6022	-0.22688	-0.00011249	-0.40941	-0.00020299	-0.63629	-0.00031548	495.8079083267146	69.499	0.99934	66.878	66.665	67.664	-2.6203					26	19	2	0	0	0	0.027462	1	5587	5587		23.042	10.836	1	41853	+		60097	16913	49576	49622	65890	65890					0.10698343439469227
VIKAVFTRG	9	Unmodified	_VIKAVFTRG_					0	0	0			REV__ENSG00000072195|ENST00000312358|SPEG	REV__ENSG00000072195|ENST00000312358|SPEG	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	495.808377	989.6022	-0.71988	-0.00035692	0.092729	4.5976E-05	-0.62716	-0.00031095	495.80836004133835	70.604	0.66944	67.123	66.934	67.603	-3.4812	0.1223	0.00031698	NaN	10.866	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62689	+		60098	16913	49576	49622							0.10698343439469227
VIKEHSEYTE	10	Unmodified	_VIKEHSEYTE_					0	0	0		nc|ENSG00000154263|Q8WWZ4-2|ABCA10;ENSG00000154263|ENST00000690296|ABCA10;nc|ENSG00000154263|Q8WWZ4-5|ABCA10;nc|ENSG00000154263|Q8WWZ4-4|ABCA10	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	nc|ENSG00000154263|Q8WWZ4-2|ABCA10	MULTI-SECPEP	OvCa9_classI_Rep2	2	412.7709655761719	3	412.203187	1233.58773	1.1797	0.00048629	2.5004	0.0010307	3.6802	0.001517	412.20394451521753	92.802	0.41542	91.634	91.341	91.756	-1.168					10	7	2	0	0	0	0.026906	1	8250	8250		33.922	0	1	12529			60099	5725	49577	49623	65891	65891					-0.019718182900078318
VIKKKKVI	8	Unmodified	_VIKKKKVI_					0	0	0		ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	ENSG00000088882|ENST00000380605|CPXM1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.7784118652344	2	478.354963	954.695373	-0.87274	-0.00041748	0.71098	0.0003401	-0.16176	-7.7379E-05	478.35412223306685	43.875	0.14719	40.867	40.744	40.891	-3.0074					4	2	2	0	0	0	0.028476	1	2137	2137		8.8223	0	1	9177.1			60100	1796	49578	49624	65892	65892					0.216212678927036
VIKLAPLVGLQ	11	Unmodified	_VIKLAPLVGLQ_					0	0	0			REV__nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C	REV__nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8812866210938	2	575.881542	1149.74853	0.38494	0.00022168	-0.56152	-0.00032337	-0.17658	-0.00010169	575.8811011364741	129.09	1.384	128.87	128.43	129.81	-0.22697					68	27	4	0	0	0	0.69808	1	12685	12685		30.318	2.4355	1	149030	+		60101	23361	49579	49625	65893	65893					0.17964600884693027
VIKLAPLVGLQ	11	Unmodified	_VIKLAPLVGLQ_					0	0	0			REV__nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C	REV__nc|ENSG00000224960|Q6ZMV5-2|PPP4R3C	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8796997070312	2	575.881542	1149.74853	-0.33635	-0.0001937	0.13878	7.9921E-05	-0.19757	-0.00011378	575.8816146863785	130.37	1.3721	129.25	128.83	130.21	-1.1121					69	27	4	0	0	0	0.69081	1	10331	10331		32.812	2.3088	1	151570	+		60102	23361	49579	49625	65894	65894					0.17964600884693027
VIKLLPNANG	10	Unmodified	_VIKLLPNANG_					0	0	0		ENSG00000185873|ENST00000332644|TMPRSS11B	ENSG00000185873|ENST00000332644|TMPRSS11B	ENSG00000185873|ENST00000332644|TMPRSS11B	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.8424072265625	2	519.818941	1037.62333	0.5787	0.00030082	-3.0248	-0.0015723	-2.4461	-0.0012715	519.8183682706914	104.44	0.5205	103	102.6	103.12	-1.4347					14	9	3	0	0	0	0.026493	1	7254	7254		84.916	24.797	1	56347			60103	8293	49580	49626	65895	65895					0.10602308748298128
VIKLLPNANG	10	Unmodified	_VIKLLPNANG_					0	0	0		ENSG00000185873|ENST00000332644|TMPRSS11B	ENSG00000185873|ENST00000332644|TMPRSS11B	ENSG00000185873|ENST00000332644|TMPRSS11B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	519.818941	1037.62333	-0.52628	-0.00027357	-1.9633	-0.0010205	-2.4896	-0.0012941	520.318972501274	103.66	0.44438	103.08	102.83	103.28	-0.57639	0.039781	0.00035905	NaN	84.916	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40466			60104	8293	49580	49626							0.10602308748298128
VIKNKLDN	8	Unmodified	_VIKNKLDN_					0	0	0		ENSG00000188738|ENST00000424728|FSIP2;nc|ENSG00000188738|Q5CZC0-2|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	ENSG00000188738|ENST00000424728|FSIP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.2688293457031	2	472.282192	942.549831	-0.29455	-0.00013911	-0.017176	-8.1118E-06	-0.31173	-0.00014722	472.2816866655673	44.477	0.60897	41.439	41.207	41.816	-3.0385					16	11	2	0	0	0	0.028476	1	2181	2181		26.796	0	1	44999			60105	8495	49581	49627	65896	65896					0.07625760305847962
VIKNLILVV	9	Unmodified	_VIKNLILVV_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa99_classI_Rep5	1	505.8537292480469	2	505.852253	1009.68995	1.9411	0.00098193	0.18901	9.5613E-05	2.1302	0.0010775	505.8521968075669	118.32	0.65492	118.32	118.02	118.67	0					24	13	3	0	0	0	0.13154	1	13564	13564		88.643	20.158	1	131090			60106	4906	49582	49628	65897	65897					0.18549544310224064
VIKNLKKT	8	Unmodified	_VIKNLKKT_					0	0	0		nc|ENSG00000138119|Q9NZM1-3|MYOF;nc|ENSG00000138119|Q9NZM1-2|MYOF;nc|ENSG00000138119|Q9NZM1-6|MYOF;ENSG00000138119|ENST00000359263|MYOF	nc|ENSG00000138119|Q9NZM1-3|MYOF	nc|ENSG00000138119|Q9NZM1-3|MYOF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.2688293457031	2	472.318577	942.622602	-0.30212	-0.0001427	0.11399	5.384E-05	-0.18813	-8.8857E-05	472.3183149519539	44.22	0.35755	41.212	41.137	41.495	-3.0074					9	6	2	0	0	0	0.028476	1	2181	2181		26.796	0	1	13934			60107	15042	49583	49629	65898	65898					0.1489951409926107
VIKQEYQKL	9	Unmodified	_VIKQEYQKL_					0	0	0		ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	ENSG00000081800|ENST00000194130|SLC13A1	MULTI-MSMS	OvCa9_classI_Rep3	3	574.8370971679688	2	574.837331	1147.66011	-1.4106	-0.00081085	0.80962	0.0004654	-0.60095	-0.00034545	574.8376960382861	90.862	4.6623	88.781	88.464	93.126	-2.0805					220	93	6	0	0	0	0.46377	1	5680	5680		45.952	3.5558	1	4849000			60108	1665	49584	49630	65899	65899					0.09218560574208823
VIKRTNSVH	9	Unmodified	_VIKRTNSVH_					0	0	0			REV__tr|A0A7D6VQW8|A0A7D6VQW8_9CLOTO-acetylhomoserineaminocarboxypropyltransferase/cysteinesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03150PE=3SV=1	REV__tr|A0A7D6VQW8|A0A7D6VQW8_9CLOTO-acetylhomoserineaminocarboxypropyltransferase/cysteinesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03150PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.3124389648438	2	527.311815	1052.60908	0.015558	8.2042E-06	-0.0018204	-9.599E-07	0.013738	7.2443E-06	527.3116773423632	33.079	1.7375	30.384	29.903	31.641	-2.6954					77	33	4	0	0	0	0.5811	1	892	892		34.173	9.9698	1	327680	+		60109	31366	49585	49631	65900	65900					0.08487656320039605
VIKRVVLS	8	Unmodified	_VIKRVVLS_					0	0	0		ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	ENSG00000167721|ENST00000301364|TSR1	MULTI-MSMS	OvCa99_classI_Rep5	1	457.3144836425781	2	457.313295	912.612037	0.011787	5.3902E-06	-0.14941	-6.8326E-05	-0.13762	-6.2936E-05	457.3132274150166	71.13	2.4399	71.13	70.877	73.317	0					162	60	5	0	0	0	0.56113	2	6905	6845;6905		71.378	2.8932	1	56551000			60110	6837	49586	49632	65901;65902	65902					0.1522353144483759
VILATIATPI	10	Unmodified	_VILATIATPI_					0	0	0			REV__tr|A0A553SGR3|A0A553SGR3_NIACIDUF969domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11365PE=4SV=1	REV__tr|A0A553SGR3|A0A553SGR3_NIACIDUF969domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_11365PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3023986816406	2	506.326068	1010.63758	-0.12655	-6.4074E-05	0.26916	0.00013628	0.14261	7.2207E-05	506.32553851232774	115.81	0.89122	114.41	114.07	114.96	-1.3977					38	17	3	0	0	0	0.027021	1	10754	10754		21.96	1.013	1	49563	+		60111	29731	49587	49633	65903	65903					0.13268961176606808
VILAVQGDGLI	11	Unmodified	_VILAVQGDGLI_					0	0	0			REV__tr|A0A553SNX3|A0A553SNX3_NIACIChemotaxisproteinCheAOS=NialliacirculansOX=1397GN=CEQ21_25390PE=4SV=1	REV__tr|A0A553SNX3|A0A553SNX3_NIACIChemotaxisproteinCheAOS=NialliacirculansOX=1397GN=CEQ21_25390PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.2854614257812	2	549.331882	1096.64921	1.209	0.00066412	-0.83814	-0.00046042	0.37082	0.0002037	549.3309886320369	119.17	0.18768	119.17	119.05	119.24	0					6	3	2	0	0	0	0.025806	1	13680	13680		24.519	3.682	1	33734	+		60112	30470	49588	49634	65904	65904					0.10475158199960788
VILCNILNNF	10	Unmodified	_VILCNILNNF_					0	0	0		Tigger4b_dup2156|chr16:29442250-29442588:-|1.197703121402909|0.4872832370944458|1.3|428.0|23|3|anti-sense;Tigger4_dup110|chr1:206077707-206078236:+|1.8187903530330864|0.069581210185122|4.71|424.0|18|1|anti-sense	Tigger4b_dup2156|chr16:29442250-29442588:-|1.197703121402909|0.4872832370944458|1.3|428.0|23|3|anti-sense	Tigger4b_dup2156|chr16:29442250-29442588:-|1.197703121402909|0.4872832370944458|1.3|428.0|23|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	581.8213500976562	2	581.818084	1161.62162	1.4281	0.00083087	3.8724	0.002253	5.3004	0.0030839	581.820406598656	137.16	1.0973	135.62	135.27	136.37	-1.5437					52	22	3	0	0	0	0.64063	1	13314	13314		37.159	2.0071	1	91028			60113	32959	49589	49635	65905	65905					0.04726931668051293
VILDLPLVI	9	Unmodified	_VILDLPLVI_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-SECPEP	OvCa9_classI_Rep2	2	497.2543029785156	2	497.830986	993.647419	-0.71882	-0.00035785	-2.1735	-0.001082	-2.8923	-0.0014399	497.8296690393332	76.493	1.2555	74.639	74.044	75.299	-1.854					61	23	4	0	0	0	0.027425	1	6342	6342		40.573	10.069	1	184500			60114	9525	49590	49636	65906	65906					0.15034149181985867
VILDPPLVAL	10	Unmodified	_VILDPPLVAL_					0	0	0		ENST00000511524.1_1_3:139654198-140275504:+|nuORF;ENSG00000158258|ENST00000458420|CLSTN2	ENST00000511524.1_1_3:139654198-140275504:+|nuORF	ENST00000511524.1_1_3:139654198-140275504:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.7623901367188	2	525.333893	1048.65323	-0.486	-0.00025531	-2.0042	-0.0010529	-2.4902	-0.0013082	525.3326036996032	64.202	0.89498	61.478	61.181	62.076	-2.7245					29	16	4	0	0	0	0.026768	1	4867	4867		40.573	10.069	1	62446			60115	5940	49591	49637	65907	65907					0.1308524769365249
VILDSPHEVIR	11	Unmodified	_VILDSPHEVIR_					0	0	0			REV__ROBO1|p.C1437Sfs*15|1|0.21|ENSG00000169855|chr3:78614773-78614774|-/TG|frameshift_variant	REV__ROBO1|p.C1437Sfs*15|1|0.21|ENSG00000169855|chr3:78614773-78614774|-/TG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	639.3632202148438	2	639.364244	1276.71394	-4.8018	-0.0030701	3.0607	0.0019569	-1.741	-0.0011131	639.3660260364965	154.07	1.1512	153.84	153.46	154.62	-0.22696					54	23	3	0	0	0	0.69455	1	15679	15679		31.53	2.3598	1	99157	+		60116	21489	49592	49638	65908	65908					0.08664733005934977
VILEGELERA	10	Unmodified	_VILEGELERA_					0	0	0		ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000167460|P67936-2|TPM4;ENST00000587201.5_1_19:16187360-16198908:+|nuORF;ENST00000520239.1_1_8:70041855-70042335:+|nuORF	ENSG00000167460|ENST00000643579|TPM4	ENSG00000167460|ENST00000643579|TPM4	MULTI-MSMS	OvCa99_classI_Rep5	1	564.818115234375	2	564.816596	1127.61864	2.5775	0.0014558	-0.95008	-0.00053662	1.6274	0.00091919	564.8162277754152	86.022	1.0933	86.022	85.544	86.637	0					84	26	4	0	0	0	0.22073	1	9036	9036		91.265	36.543	1	6765000			60117	6790	49593	49639	65909	65909					0.05993379814913169
VILEGELERA	10	Unmodified	_VILEGELERA_					0	0	0		ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000167460|P67936-2|TPM4;ENST00000587201.5_1_19:16187360-16198908:+|nuORF;ENST00000520239.1_1_8:70041855-70042335:+|nuORF	ENSG00000167460|ENST00000643579|TPM4	ENSG00000167460|ENST00000643579|TPM4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	564.816596	1127.61864	1.0546	0.00059567	-2.1936	-0.001239	-1.139	-0.00064333	564.8156304560789	87.145	1.4064	85.714	85.122	86.528	-1.4311	-0.044692	-0.0016177	NaN	91.265	56	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84142			60118	6790	49593	49639							0.05993379814913169
VILEGELERA	10	Unmodified	_VILEGELERA_					0	0	0		ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000167460|P67936-2|TPM4;ENST00000587201.5_1_19:16187360-16198908:+|nuORF;ENST00000520239.1_1_8:70041855-70042335:+|nuORF	ENSG00000167460|ENST00000643579|TPM4	ENSG00000167460|ENST00000643579|TPM4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	564.816596	1127.61864	-0.80925	-0.00045708	0.446	0.00025191	-0.36325	-0.00020517	564.8170406786429	87.857	1.2746	85.68	85.19	86.464	-2.1768	-0.078427	0.0013641	NaN	91.265	62	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	176590			60119	6790	49593	49639							0.05993379814913169
VILEGELERA	10	Unmodified	_VILEGELERA_					0	0	0		ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000167460|P67936-2|TPM4;ENST00000587201.5_1_19:16187360-16198908:+|nuORF;ENST00000520239.1_1_8:70041855-70042335:+|nuORF	ENSG00000167460|ENST00000643579|TPM4	ENSG00000167460|ENST00000643579|TPM4	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	564.816596	1127.61864	-1.5267	-0.00086229	0.49482	0.00027948	-1.0319	-0.00058281	564.8171111915846	88.221	0.85562	85.618	85.179	86.034	-2.6027	-0.1401	0.0014193	NaN	91.265	41	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	150490			60120	6790	49593	49639							0.05993379814913169
VILEILIFC	9	Unmodified	_VILEILIFC_					0	0	0		STK3-NIPAL2|1|fusion;STK3-NIPAL2|3|fusion;STK3-NIPAL2|2|fusion;nc|ENSG00000104361|Q9H841-1|NIPAL2;ENSG00000104361|ENST00000430223|NIPAL2	STK3-NIPAL2|1|fusion	STK3-NIPAL2|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8165283203125	2	531.817021	1061.61949	-1.8698	-0.0009944	1.6543	0.0008798	-0.21549	-0.0001146	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.64339	1	14022	14022		26.796	1.222	1	166960			60121	32925	49594	49640	65910	65910					0.09114502930265189
VILFIAFDL	9	Unmodified	_VILFIAFDL_					0	0	0			REV__ENSG00000162763|ENST00000294818|LRRC52	REV__ENSG00000162763|ENST00000294818|LRRC52	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.784423828125	2	525.815336	1049.61612	-0.65169	-0.00034267	1.0279	0.0005405	0.37623	0.00019783	525.8163843635601	102.64	0.31601	100.44	100.25	100.57	-2.1994					7	5	2	0	0	0	0.027462	1	9261	9261		18.324	0	1	10523	+		60122	20777	49595	49641	65911	65911					0.09329576147911212
VILGFRKAS	9	Unmodified	_VILGFRKAS_					0	0	0			REV__ENST00000481622.1_1_3:23848730-23850221:+|nuORF	REV__ENST00000481622.1_1_3:23848730-23850221:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	495.8070983886719	2	495.808377	989.6022	-1.6284	-0.00080736	-2.787	-0.0013818	-4.4154	-0.0021892	495.8069614829561	143.45	1.4815	143.22	142.7	144.19	-0.22696					60	29	3	0	0	0	0.70685	1	14442	14442		15.642	0.0055962	1	72131	+		60123	26482	49596	49642	65912	65912					0.10698343439457858
VILGNGLLS	9	Unmodified	_VILGNGLLS_					0	0	0			REV__ENSG00000165204|ENST00000277309|OR1K1	REV__ENSG00000165204|ENST00000277309|OR1K1	MULTI-MSMS	OvCa9_classI_Rep3	3	443.2730407714844	2	443.273835	884.533118	-1.4905	-0.00066069	-1.4677	-0.00065059	-2.9582	-0.0013113	443.2730906196648	139.11	1.2789	138.05	137.68	138.96	-1.0595					59	25	3	0	0	0	0.55588	1	11401	11401		37.159	3.6435	1	174030	+		60124	21068	49597	49643	65913	65913					0.08623259419914575
VILHLTVLL	9	Unmodified	_VILHLTVLL_					0	0	0		ENSG00000153207|ENST00000648844|AHCTF1;nc|ENSG00000153207|Q8WYP5-3|AHCTF1;nc|ENSG00000153207|Q8WYP5-2|AHCTF1;ENST00000420969.1_1_2:162360026-162361742:-|nuORF;ENST00000470300.5_1_1:247027247-247061635:-|nuORF	ENSG00000153207|ENST00000648844|AHCTF1	ENSG00000153207|ENST00000648844|AHCTF1	MULTI-MSMS	OvCa99_classI_Rep5	1	510.84576416015625	2	510.844428	1019.6743	1.7378	0.00088774	-0.45049	-0.00023013	1.2873	0.00065761	510.844151205605	125.22	2.5768	125.22	124.65	127.23	0					181	58	5	0	0	0	0.29717	1	14578	14578		63.306	5.495	1	21123000			60125	5666	49598	49644	65914	65914					0.16525257793159653
VILHQLNVL	9	Unmodified	_VILHQLNVL_					0	0	0			REV__ENSG00000156564|ENST00000338305|LRFN2	REV__ENSG00000156564|ENST00000338305|LRFN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.8268432617188	2	524.829309	1047.64407	-5.767	-0.0030267	1.6173	0.0008488	-4.1497	-0.0021779	524.8300427930473	156.94	1.6972	155.39	155.01	156.7	-1.545					136	47	6	0	0	0	0.58665	1	15558	15558		33.516	12.569	1	1010500	+		60126	20487	49599	49645	65915	65915					0.12214899127980061
VILHSSCTN	9	Carbamidomethyl (C)	_VILHSSC(Carbamidomethyl (C))TN_	VILHSSC(1)TN		VILHSSC(64)TN		0	1	0			REV__nc|ENSG00000168126|Q8NHA6|OR2W6P	REV__nc|ENSG00000168126|Q8NHA6|OR2W6P	MULTI-MSMS	OvCa9_classI_Rep2	2	515.7510986328125	2	515.752941	1029.49133	0.78461	0.00040466	-3.3864	-0.0017465	-2.6018	-0.0013419	515.7511516443681	131.35	1.919	131.12	130.7	132.62	-0.22696					91	38	4	0	0	0	0.28934	1	12945	12945		64.207	6.7546	1	572010	+		60127	28990	49600	49646	65916	65916	357				-0.02223664330927022
VILHVKRR	8	Unmodified	_VILHVKRR_					0	0	0		ENSG00000151882|ENST00000361115|CCL28	ENSG00000151882|ENST00000361115|CCL28	ENSG00000151882|ENST00000361115|CCL28	MULTI-MSMS	OvCa9_classI_Rep2	2	510.8434753417969	2	510.843085	1019.67162	0.099341	5.0748E-05	2.0094	0.0010265	2.1088	0.0010773	510.8440612216227	123.45	4.7392	123.21	122.74	127.48	-0.23193					211	95	5	0	0	0	0.71369	1	12163	12163		40.573	8.6178	1	2560200			60128	5590	49601	49647	65917	65917					0.16256847178885891
VILKDDNIL	9	Unmodified	_VILKDDNIL_					0	0	0		tr|A0A7D6W2Z1|A0A7D6W2Z1_9CLOTNUDIXdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08170PE=4SV=1	tr|A0A7D6W2Z1|A0A7D6W2Z1_9CLOTNUDIXdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08170PE=4SV=1	tr|A0A7D6W2Z1|A0A7D6W2Z1_9CLOTNUDIXdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08170PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.8130493164062	2	521.810782	1041.60701	-0.59233	-0.00030908	4.4862	0.0023409	3.8938	0.0020318	521.8131591315095	68.904	2.2928	65.414	65.113	67.406	-3.4902					139	46	6	0	0	0	0.59259	1	5115	5115		32.812	0	1	4748000			60129	35444	49602	49648	65918	65918					0.0878718279154782
VILLAIMAF	9	Unmodified	_VILLAIMAF_					0	0	0		OR12D3|p.A110V|1|0.39|ENSG00000112462|chr6:29374959-29374959|G/A|missense_variant	OR12D3|p.A110V|1|0.39|ENSG00000112462|chr6:29374959-29374959|G/A|missense_variant	OR12D3|p.A110V|1|0.39|ENSG00000112462|chr6:29374959-29374959|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	495.8084716796875	2	495.806457	989.598361	-1.6284	-0.00080736	1.0853	0.0005381	-0.54308	-0.00026926	495.8069614829561	143.45	1.4815	143.22	142.7	144.19	-0.22696					60	29	3	0	0	0	0.68641	1	14387	14387		21.702	0	1	72131			60130	15451	49603	49649	65919	65919					0.10314537621400177
VILLKKFE	8	Unmodified	_VILLKKFE_					0	0	0			REV__tr|A0A7D6VN13|A0A7D6VN13_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_15725PE=4SV=1	REV__tr|A0A7D6VN13|A0A7D6VN13_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_15725PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	495.3223571777344	2	495.323328	988.632104	-0.33743	-0.00016714	0.094885	4.6999E-05	-0.24255	-0.00012014	495.32325174233563	104.47	2.4848	103.9	103.57	106.06	-0.57639					111	49	3	0	0	0	0.59148	1	9697	9697		65.803	2.4969	1	462520	+		60131	31154	49604	49650	65920	65920					0.13733282384794165
VILLPQPLK	9	Unmodified	_VILLPQPLK_					0	0	0		chr6:7904723-7908706|153|12.88|0.0|20.3|-|0|TE_info:AluJo,AluJo_dup23316,Alu,SINE,donor,+,7908706,7908867|TXNDC5,None|1	chr6:7904723-7908706|153|12.88|0.0|20.3|-|0|TE_info:AluJo,AluJo_dup23316,Alu,SINE,donor,+,7908706,7908867|TXNDC5,None|1	chr6:7904723-7908706|153|12.88|0.0|20.3|-|0|TE_info:AluJo,AluJo_dup23316,Alu,SINE,donor,+,7908706,7908867|TXNDC5,None|1	MULTI-MSMS	OvCa99_classI_Rep5	1	510.84576416015625	2	510.844428	1019.6743	1.7378	0.00088774	-0.45049	-0.00023013	1.2873	0.00065761	510.844151205605	125.22	2.5768	125.22	124.65	127.23	0					181	58	5	0	0	0	0.25214	1	14527	14527		68.485	2.6815	1	21123000			60132	519	49605	49651	65921	65921					0.16525257793171022
VILLPQPLK	9	Unmodified	_VILLPQPLK_					0	0	0		chr6:7904723-7908706|153|12.88|0.0|20.3|-|0|TE_info:AluJo,AluJo_dup23316,Alu,SINE,donor,+,7908706,7908867|TXNDC5,None|1	chr6:7904723-7908706|153|12.88|0.0|20.3|-|0|TE_info:AluJo,AluJo_dup23316,Alu,SINE,donor,+,7908706,7908867|TXNDC5,None|1	chr6:7904723-7908706|153|12.88|0.0|20.3|-|0|TE_info:AluJo,AluJo_dup23316,Alu,SINE,donor,+,7908706,7908867|TXNDC5,None|1	MULTI-MSMS	OvCa9_classI_Rep3	3	510.8430480957031	2	510.844428	1019.6743	1.4399	0.00073557	-1.9888	-0.001016	-0.54888	-0.00028039	510.84340100881786	124.3	4.2588	123.26	122.82	127.08	-1.0377					208	81	5	0	0	0	0.39645	1	9746	9746		52.299	2.2746	1	3150800			60133	519	49605	49651	65922	65922					0.16525257793171022
VILMLNPLI	9	Unmodified	_VILMLNPLI_					0	0	0		ENSG00000181518|ENST00000641687|OR8D4	ENSG00000181518|ENST00000641687|OR8D4	ENSG00000181518|ENST00000641687|OR8D4	MULTI-MSMS	OvCa9_classI_Rep3	3	513.3283081054688	2	513.325014	1024.63547	1.1851	0.00060836	-0.96302	-0.00049434	0.22213	0.00011402	513.8246530993847	67.449	2.102	64.562	64.137	66.239	-2.8873					146	41	6	0	0	0	0.58665	1	2940	2940		33.516	1.5607	1	2025700			60134	7934	49606	49652	65923	65923					0.12414209167150148
VILNELEDLA	10	Unmodified	_VILNELEDLA_					0	0	0			REV__JMJD1C-CTNNA3|1|fusion	REV__JMJD1C-CTNNA3|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.8115234375	2	564.810979	1127.6074	-0.32119	-0.00018141	-0.53819	-0.00030397	-0.85937	-0.00048538	564.8105266478774	146.61	1.7739	145.17	144.75	146.53	-1.4357					75	34	3	0	0	0	0.78463	1	14447	14447		20.947	0	1	178590	+		60135	22350	49607	49653	65924	65924					0.048705577207556416
VILNIRLQV	9	Unmodified	_VILNIRLQV_					0	0	0		ENSG00000256537|ENST00000622602|SMIM10L1	ENSG00000256537|ENST00000622602|SMIM10L1	ENSG00000256537|ENST00000622602|SMIM10L1	MULTI-MSMS	OvCa99_classI_Rep5	1	534.3518676757812	2	534.350409	1066.68626	1.7201	0.00091915	0.45969	0.00024564	2.1798	0.0011648	534.3504196658696	119.92	0.66956	119.92	119.65	120.32	0					43	15	4	0	0	0	0.019428	2	13787	13760;13787		147.69	32.234	1	755320			60136	9465	49608	49654	65925;65926	65926					0.1555887453635023
VILNTVVFFV	10	Unmodified	_VILNTVVFFV_					0	0	0			REV__ENST00000547933.1_1_17:3593719-3599299:-|nuORF	REV__ENST00000547933.1_1_17:3593719-3599299:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8419189453125	2	575.847167	1149.67978	-3.1773	-0.0018296	-3.5706	-0.0020561	-6.7479	-0.0038857	575.8447773729116	141.87	3.8997	140.86	138.96	142.86	-1.0106					243	78	6	0	0	0	0.71173	1	11787	11787		29.17	0.020503	1	129610	+		60137	17102	49609	49655	65927	65927					0.11092936584987001
VILNTVVFFV	10	Unmodified	_VILNTVVFFV_					0	0	0			REV__ENST00000547933.1_1_17:3593719-3599299:-|nuORF	REV__ENST00000547933.1_1_17:3593719-3599299:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8429565429688	2	575.847167	1149.67978	-4.018	-0.0023138	-2.943	-0.0016947	-6.9609	-0.0040084	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.73378	1	12357	12357		26.693	4.733	1	445630	+		60138	17102	49609	49655	65928	65928					0.11092936584987001
VILQKPGVLA	10	Unmodified	_VILQKPGVLA_					0	0	0			REV__ENSG00000084092|ENST00000264230|NOA1	REV__ENSG00000084092|ENST00000264230|NOA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2815551757812	2	519.33951	1036.66447	1.3416	0.00069673	-2.0753	-0.0010778	-0.73374	-0.00038106	519.3399953102476	102.09	0.38313	102.09	101.95	102.34	0					12	8	2	0	0	0	0.026697	1	11366	11366		29.15	0	1	158000	+		60139	17118	49610	49656	65929	65929					0.1476006978782607
VILSFAQLFL	10	Unmodified	_VILSFAQLFL_					0	0	0			REV__tr|A0A553SIN4|A0A553SIN4_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_15220PE=4SV=1	REV__tr|A0A553SIN4|A0A553SIN4_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_15220PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8428344726562	2	575.847167	1149.67978	-4.018	-0.0023138	-2.943	-0.0016947	-6.9609	-0.0040084	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.70152	1	12294	12294		30.318	2.4355	1	445630	+		60140	29912	49611	49657	65930	65930					0.11092936584987001
VILSKILKKK	10	Unmodified	_VILSKILKKK_					0	0	0			REV__tr|A0A7D6ZY52|A0A7D6ZY52_9CLOTEffluxRNDtransporterperiplasmicadaptorsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_01870PE=3SV=1	REV__tr|A0A7D6ZY52|A0A7D6ZY52_9CLOTEffluxRNDtransporterperiplasmicadaptorsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_01870PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	585.3501586914062	2	585.420834	1168.82712	-1.3669	-0.00080019	-3.1195	-0.0018262	-4.4864	-0.0026264	585.4199565381092	73.024	0.24567	70.537	70.432	70.677	-2.4873					6	4	2	0	0	0	0.027198	1	3511	3511		19.997	12.803	1	11724	+		60141	32359	49612	49658	65931	65931					0.24945453189798172
VILSLILHL	9	Unmodified	_VILSLILHL_					0	0	0		ENSG00000113249|ENST00000523175|HAVCR1	ENSG00000113249|ENST00000523175|HAVCR1	ENSG00000113249|ENST00000523175|HAVCR1	MULTI-MSMS	OvCa9_classI_Rep2	2	510.8424987792969	2	510.844428	1019.6743	0.099341	5.0748E-05	-0.6189	-0.00031616	-0.51956	-0.00026541	510.8440612216227	123.45	4.7392	123.21	122.74	127.48	-0.23193					211	95	5	0	0	0	0.39645	1	12121	12121		52.299	0	1	2560200			60142	2956	49613	49659	65932	65932					0.1652525779318239
VILSLILHL	9	Unmodified	_VILSLILHL_					0	0	0		ENSG00000113249|ENST00000523175|HAVCR1	ENSG00000113249|ENST00000523175|HAVCR1	ENSG00000113249|ENST00000523175|HAVCR1	MULTI-MSMS	OvCa9_classI_Rep3	3	510.84381103515625	2	510.844428	1019.6743	1.4399	0.00073557	-1.9888	-0.001016	-0.54888	-0.00028039	510.84340100881786	124.3	4.2588	123.26	122.82	127.08	-1.0377					208	81	5	0	0	0	0.42057	1	9740	9740		50.025	2.1089	1	3150800			60143	2956	49613	49659	65933	65933					0.1652525779318239
VILSPIFAF	9	Unmodified	_VILSPIFAF_					0	0	0			REV__ENST00000263168.3_1_1:113213397-113213451:+|nuORF	REV__ENST00000263168.3_1_1:113213397-113213451:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	503.80206298828125	2	503.802229	1005.5899	1.9668	0.00099089	-3.5768	-0.001802	-1.61	-0.00081111	503.80022479391795	92.923	1.5406	92.923	92.008	93.549	0					70	36	4	0	0	0	0.25214	1	10050	10050		68.485	5.1784	1	3215500	+		60144	23991	49614	49660	65934	65934					0.08733306976409949
VILVTGPTHL	10	Unmodified	_VILVTGPTHL_					0	0	0		tr|A0A553SP79|A0A553SP79_NIACICoenzymeAbiosynthesisbifunctionalproteinCoaBCOS=NialliacirculansOX=1397GN=coaBCPE=3SV=1	tr|A0A553SP79|A0A553SP79_NIACICoenzymeAbiosynthesisbifunctionalproteinCoaBCOS=NialliacirculansOX=1397GN=coaBCPE=3SV=1	tr|A0A553SP79|A0A553SP79_NIACICoenzymeAbiosynthesisbifunctionalproteinCoaBCOS=NialliacirculansOX=1397GN=coaBCPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.8563842773438	2	525.321317	1048.62808	1.423	0.00074751	0.33315	0.00017501	1.7561	0.00092253	525.3213780011491	126.6	0.9119	126.6	126.23	127.14	0					34	19	2	0	0	0	0.026802	1	14705	14705		51.335	22.186	1	239880			60145	34012	49615	49661	65935	65935					0.1057119289109778
VILWLMVEL	9	Unmodified	_VILWLMVEL_					0	0	0		nc|ENSG00000110911|P49281-5|SLC11A2;ENSG00000110911|ENST00000262052|SLC11A2;nc|ENSG00000110911|P49281|SLC11A2;nc|ENSG00000110911|P49281-3|SLC11A2;chr12:51028411-51028511|402|14.17|0.24|5.88|-|ENST00000394904|SLC11A2,SLC11A2;nc|ENSG00000110911|P49281-4|SLC11A2	nc|ENSG00000110911|P49281-5|SLC11A2	nc|ENSG00000110911|P49281-5|SLC11A2	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.811279296875	2	558.330296	1114.64604	2.5859	0.0014438	2.1359	0.0011925	4.7218	0.0026363	558.3311795040221	82.416	0.43051	82.416	82.222	82.652	0					15	9	2	0	0	0	0.027462	1	8564	8564		25.45	4.5032	1	272650			60146	316	49616	49662	65936	65936					0.09330191821572953
VIMACFYPNI	10	Unmodified	_VIMACFYPNI_					0	0	0		nc|ENSG00000177058|Q8NBW4-4|SLC38A9;nc|ENSG00000177058|Q8NBW4-3|SLC38A9;ENSG00000177058|ENST00000396865|SLC38A9;ENST00000515159.5_1_5:54922324-54929566:-|nuORF	nc|ENSG00000177058|Q8NBW4-4|SLC38A9	nc|ENSG00000177058|Q8NBW4-4|SLC38A9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	585.3132934570312	2	585.787938	1169.56132	-1.2573	-0.00073652	-3.0178	-0.0017678	-4.2751	-0.0025043	586.2872962521922	80.648	0.48744	77.937	77.81	78.298	-2.7106					12	9	2	0	0	0	0.026871	1	6615	6615		29.15	16.943	1	27126			60147	7654	49617	49663	65937	65937					-0.01667501986685238
VIMIILMIP	9	Unmodified	_VIMIILMIP_					0	0	0		nc|ENSG00000291104|Q96KV6|BTN2A3P;ENST00000463944.1_1_6:26426426-26428241:+|nuORF	nc|ENSG00000291104|Q96KV6|BTN2A3P	nc|ENSG00000291104|Q96KV6|BTN2A3P	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.798583984375	2	521.823792	1041.63303	-0.20104	-0.00010491	-0.60872	-0.00031764	-0.80976	-0.00042255	522.3256122685335	59.586	0.93599	56.194	55.655	56.591	-3.392					37	18	3	0	0	0	0.027462	1	3922	3922		8.8223	0	1	49350			60148	15400	49618	49664	65938	65938					0.11388037437814091
VIMIILMIP	9	Unmodified	_VIMIILMIP_					0	0	0		nc|ENSG00000291104|Q96KV6|BTN2A3P;ENST00000463944.1_1_6:26426426-26428241:+|nuORF	nc|ENSG00000291104|Q96KV6|BTN2A3P	nc|ENSG00000291104|Q96KV6|BTN2A3P	MULTI-MATCH	OvCa99_classI_Rep5	1		2	521.823792	1041.63303	-0.8169	-0.00042628	-2.9692	-0.0015494	-3.7861	-0.0019757	521.8221982853846	56.085	0.37242	56.085	55.888	56.261	0	-0.054614	-0.00020592	NaN	8.8223	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	427500			60149	15400	49618	49664							0.11388037437814091
VIMVRKWN	8	Unmodified	_VIMVRKWN_					0	0	0			REV__ENSG00000136213|ENST00000618655|CHST12	REV__ENSG00000136213|ENST00000618655|CHST12	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3030395507812	2	523.302404	1044.59026	-0.69596	-0.0003642	2.9395	0.0015382	2.2435	0.001174	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.74679	1	13923	13923		28.254	1.4582	1	130240	+		60150	19368	49619	49665	65939	65939					0.06974403424624143
VIMWKNSLF	9	Unmodified	_VIMWKNSLF_					0	0	0		nc|ENSG00000125046|Q9Y2M2-3|SSUH2;ENST00000413305.5_1_3:8661556-8676112:-|nuORF;nc|ENSG00000125046|Q9Y2M2-1|SSUH2;ENSG00000125046|ENST00000544814|SSUH2;ENST00000420394.5_1_3:8661556-8693727:-|nuORF	nc|ENSG00000125046|Q9Y2M2-3|SSUH2	nc|ENSG00000125046|Q9Y2M2-3|SSUH2	MULTI-MSMS	OvCa99_classI_Rep5	1	569.311279296875	2	569.309895	1136.60524	0.81678	0.000465	1.5453	0.00087977	2.3621	0.0013448	569.310553719728	132.23	0.80034	132.23	131.85	132.65	0					50	16	4	0	0	0	0.33652	1	15347	15347		58.782	5.8453	1	1234700			60151	3689	49620	49666	65940	65940					0.042398505019491495
VINFLLPLL	9	Unmodified	_VINFLLPLL_					0	0	0			REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|106|2|sense	REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|106|2|sense	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.3070678710938	2	521.338978	1040.6634	-0.53703	-0.00027997	3.5866	0.0018698	3.0495	0.0015898	521.3409758435355	90.247	0.3577	88.167	87.953	88.31	-2.0805					9	6	2	0	0	0	0.027462	1	5585	5585		52.299	2.2746	1	10546	+		60152	28543	49621	49667	65941	65941					0.14469855418906263
VINKKQLQL	9	Unmodified	_VINKKQLQL_					0	0	0		nc|ENSG00000013374|Q9Y5A7-2|NUB1;PRKAG2-NUB1|3|fusion;ENSG00000013374|ENST00000568733|NUB1;PRKAG2-NUB1|4|fusion;PRKAG2-NUB1|5|fusion;PRKAG2-NUB1|6|fusion;PRKAG2-NUB1|1|fusion;PRKAG2-NUB1|2|fusion;ENST00000470316.5_1_7:151049232-151057334:+|nuORF	nc|ENSG00000013374|Q9Y5A7-2|NUB1	nc|ENSG00000013374|Q9Y5A7-2|NUB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.3489379882812	2	542.347866	1082.68118	-0.44501	-0.00024135	0.00017241	9.3508E-08	-0.44484	-0.00024126	542.3476980873517	59.42	2.0278	56.028	55.755	57.782	-3.392					97	40	4	0	0	0	0.11171	1	3963	3963		94.006	0.81096	1	794850			60153	984	49622	49668	65942	65942					0.14314570673764138
VINKVKLEV	9	Unmodified	_VINKVKLEV_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OvCa99_classI_Rep5	1	521.338623046875	2	521.336967	1040.65938	-0.93181	-0.00048579	1.2175	0.00063474	0.28571	0.00014895	521.3374352817234	66.407	0.68292	66.407	66.174	66.857	0					42	16	4	0	0	0	0.014622	1	6157	6157		154.12	10.232	1	1881400			60154	15005	49623	49669	65943	65943					0.14067765925165077
VINKVKLEV	9	Unmodified	_VINKVKLEV_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	521.336967	1040.65938	-1.1121	-0.00057975	0.66923	0.0003489	-0.44282	-0.00023086	521.3372311707042	69.962	0.73415	66.481	66.249	66.983	-3.4812	0.06942	-0.0001054	NaN	154.12	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106070			60155	15005	49623	49669							0.14067765925165077
VINLLITSFAS	11	Unmodified	_VINLLITSFAS_					0	0	0		ENST00000547250.5_1_12:57033951-57037708:-|nuORF	ENST00000547250.5_1_12:57033951-57037708:-|nuORF	ENST00000547250.5_1_12:57033951-57037708:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3419189453125	2	589.344989	1176.67542	-4.3129	-0.0025418	0.73104	0.00043083	-3.5818	-0.0021109	589.3453728975387	144.79	3.9151	143.81	141.71	145.63	-0.97299					242	78	5	0	0	0	0.7046	2	12225	12134;12225		28.081	2.5074	1	192050			60156	13549	49624	49670	65944;65945	65945					0.09415427371436635
VINLLITSFAS	11	Unmodified	_VINLLITSFAS_					0	0	0		ENST00000547250.5_1_12:57033951-57037708:-|nuORF	ENST00000547250.5_1_12:57033951-57037708:-|nuORF	ENST00000547250.5_1_12:57033951-57037708:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3435668945312	2	589.344989	1176.67542	-5.1334	-0.0030254	1.6192	0.00095427	-3.5142	-0.0020711	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.67529	5	12617	12437;12516;12528;12617;12771		37.812	8.6415	1	589610			60157	13549	49624	49670	65946;65947;65948;65949;65950	65949					0.09415427371436635
VINLLITSFAS	11	Unmodified	_VINLLITSFAS_					0	0	0		ENST00000547250.5_1_12:57033951-57037708:-|nuORF	ENST00000547250.5_1_12:57033951-57037708:-|nuORF	ENST00000547250.5_1_12:57033951-57037708:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3435668945312	2	589.344989	1176.67542	-2.1868	-0.0012888	-1.3084	-0.00077111	-3.4952	-0.0020599	589.3441619466173	148.26	4.549	146.82	145.53	150.08	-1.435					304	95	6	0	0	0	0.69808	4	14685	14494;14553;14603;14685		30.318	2.5593	1	385010			60158	13549	49624	49670	65951;65952;65953;65954	65954					0.09415427371436635
VINNETLNL	9	Unmodified	_VINNETLNL_					0	0	0			REV__tr|A0A7D6W0V3|A0A7D6W0V3_9CLOTAminotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01320PE=3SV=1	REV__tr|A0A7D6W0V3|A0A7D6W0V3_9CLOTAminotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01320PE=3SV=1	MSMS	OvCa9_classI_Rep2	2	515.2819213867188	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.69	1	106.38	105.88	106.88	-0.30836								0	0	0	0.16939	1	9941	9941		52.937	0	1		+		60159	31866	49625	49671	65955	65955					0.037091352350216766
VINWVACGAL	10	Unmodified	_VINWVACGAL_					0	0	0			REV__nc|ENSG00000155755|Q96Q45-4|TMEM237	REV__nc|ENSG00000155755|Q96Q45-4|TMEM237	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8068237304688	2	523.278595	1044.54264	-0.82337	-0.00043085	2.431	0.0012721	1.6076	0.00084121	523.279922063298	55.81	0.4527	55.81	55.599	56.052	0					14	10	2	0	0	0	0.026639	1	4582	4582		53.351	0	1	1128500	+		60160	20440	49626	49672	65956	65956					0.022147044337543775
VINYSIVKGL	10	Unmodified	_VINYSIVKGL_					0	0	0		nc|ENSG00000196405|Q9UI08-4|EVL;nc|ENSG00000196405|Q9UI08-3|EVL;nc|ENSG00000196405|Q9UI08-5|EVL;nc|ENSG00000196405|Q9UI08|EVL;ENSG00000196405|ENST00000392920|EVL;ENST00000556921.1_1_14:100551177-100572452:+|nuORF;ENST00000557637.1_1_14:100531783-100564000:+|nuORF;ENST00000554460.5_1_14:100540857-100568654:+|nuORF	nc|ENSG00000196405|Q9UI08-4|EVL	nc|ENSG00000196405|Q9UI08-4|EVL	MULTI-MSMS	OvCa99_classI_Rep5	1	553.33349609375	2	553.334424	1104.6543	0.91649	0.00050712	-2.7282	-0.0015096	-1.8117	-0.0010025	553.3328003393297	157.32	1.3723	157.32	157	158.37	0					80	27	4	0	0	0	0.72319	1	18475	18475		27.882	6.9353	1	1199000			60161	8601	49627	49673	65957	65957					0.10615462062582992
VIPIDEVI	8	Unmodified	_VIPIDEVI_					0	0	0		tr|A0A7D6ZWA2|A0A7D6ZWA2_9CLOTCopper-exportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18195PE=3SV=1	tr|A0A7D6ZWA2|A0A7D6ZWA2_9CLOTCopper-exportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18195PE=3SV=1	tr|A0A7D6ZWA2|A0A7D6ZWA2_9CLOTCopper-exportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18195PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	449.2689514160156	2	449.268219	896.521884	3.2258	0.0014492	-1.8722	-0.00084112	1.3536	0.00060812	449.26732371902864	112.43	2.5171	112.3	111.93	114.45	-0.12174					121	50	4	0	0	0	0.72922	1	10671	10671		37.028	0	1	1472600			60162	35833	49628	49674	65958	65958					0.06948437325752366
VIPMKAKTSLE	11	Unmodified	_VIPMKAKTSLE_					0	0	0			REV__nc|ENSG00000227471|C9JRZ8|AKR1B15	REV__nc|ENSG00000227471|C9JRZ8|AKR1B15	MULTI-SECPEP	OvCa99_classI_Rep5	1	608.305419921875	2	608.852124	1215.68969	2.1096	0.0012845	-1.9565	-0.0011912	0.15312	9.3228E-05	608.8508238041469	98.67	0.74664	98.67	98.29	99.036	0					32	17	3	0	0	0	0.025638	1	10896	10896		23.523	0	1	383930	+		60163	22982	49629	49675	65959	65959					0.09047756528048012
VIPMVSLFI	9	Unmodified	_VIPMVSLFI_					0	0	0		tr|A0A7D6ZYA2|A0A7D6ZYA2_9CLOTDUF2975domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01375PE=4SV=1	tr|A0A7D6ZYA2|A0A7D6ZYA2_9CLOTDUF2975domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01375PE=4SV=1	tr|A0A7D6ZYA2|A0A7D6ZYA2_9CLOTDUF2975domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01375PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	509.8033142089844	2	509.803914	1017.59328	-1.31	-0.00066782	0.8449	0.00043073	-0.46505	-0.00023708	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.6653	1	11124	11124		24.203	0	1	99460			60164	35912	49630	49676	65960	65960					0.08518233758763927
VIPNLLFYL	9	Unmodified	_VIPNLLFYL_					0	0	0			REV__tr|A0A553SK58|A0A553SK58_NIACIAI-2EfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_17955PE=3SV=1	REV__tr|A0A553SK58|A0A553SK58_NIACIAI-2EfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_17955PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.3302001953125	2	546.328611	1090.64267	-0.86645	-0.00047337	-3.3985	-0.0018567	-4.265	-0.0023301	546.3266961035738	105.99	2.0074	103.98	103.55	105.55	-2.0161					87	38	4	0	0	0	0.30002	1	9665	9665		62.978	0.87101	1	594290	+		60165	30081	49631	49677	65961	65961					0.10097265039235026
VIPNRIFVGGI	11	Unmodified	_VIPNRIFVGGI_					0	0	0		ENSG00000152430|ENST00000392296|BOLL;nc|ENSG00000152430|Q8N9W6-4|BOLL;nc|ENSG00000152430|Q8N9W6-3|BOLL;nc|ENSG00000152430|Q8N9W6-2|BOLL	ENSG00000152430|ENST00000392296|BOLL	ENSG00000152430|ENST00000392296|BOLL	MULTI-MSMS	OvCa99_classI_Rep5	1	592.8611450195312	2	592.861141	1183.70773	-1.0436	-0.00061873	0.63611	0.00037713	-0.40752	-0.0002416	592.8614945782524	34.609	0.98764	34.609	34.351	35.339	0					58	20	5	0	0	0	0.70865	1	1704	1704		26.693	1.1189	1	2553700			60166	5622	49632	49678	65962	65962					0.12322259565098648
VIPPSIFIAH	10	Unmodified	_VIPPSIFIAH_					0	0	0		nc|ENSG00000173728|Q5SVJ3-2|SPMIP3;ENSG00000173728|ENST00000308105|C1orf100	nc|ENSG00000173728|Q5SVJ3-2|SPMIP3	nc|ENSG00000173728|Q5SVJ3-2|SPMIP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.3084716796875	2	547.32386	1092.63317	1.1585	0.0006341	2.2817	0.0012488	3.4402	0.0018829	547.3255049260293	146.4	0.491	146.4	146.13	146.62	0					13	9	2	0	0	0	0.027084	1	17132	17132		17.365	0	1	36267			60167	7410	49633	49679	65963	65963					0.0905549675369457
VIPRDDPLV	9	Unmodified	_VIPRDDPLV_					0	0	0		nc|ENSG00000146192|Q7Z6J4-2|FGD2;ENST00000487920.1_1_6:36989957-36995408:+|nuORF;ENST00000493635.1_1_6:36993330-36995936:+|nuORF;ENST00000464083.5_1_6:36982408-36995936:+|nuORF;ENST00000494343.5_1_6:36981367-36995936:+|nuORF;ENSG00000146192|ENST00000274963|FGD2	nc|ENSG00000146192|Q7Z6J4-2|FGD2	nc|ENSG00000146192|Q7Z6J4-2|FGD2	MULTI-MSMS	OvCa99_classI_Rep5	1	512.2960815429688	2	512.295299	1022.57605	2.1746	0.001114	-0.22178	-0.00011362	1.9528	0.0010004	512.2951603101329	97.058	0.68456	97.058	96.838	97.522	0					33	15	4	0	0	0	0.31747	1	10658	10658		60.972	4.2509	1	2297700			60168	5270	49634	49680	65964	65964					0.06566029477323809
VIPRPEPMLRV	11	Unmodified	_VIPRPEPMLRV_					0	0	0		ENSG00000168005|ENST00000294244|SPINDOC	ENSG00000168005|ENST00000294244|SPINDOC	ENSG00000168005|ENST00000294244|SPINDOC	MULTI-MSMS	OvCa9_classI_Rep3	3	436.2617492675781	3	436.260314	1305.75911	1.694	0.00073904	0.86623	0.0003779	2.5603	0.0011169	436.26077678089143	64.483	2.8395	61.49	61.14	63.98	-2.9933					174	55	5	0	0	0	0.71831	1	2586	2586		23.378	0	1	3808000			60169	6862	49635	49681	65965	65965					0.11846260267452635
VIPSIGPFIL	10	Unmodified	_VIPSIGPFIL_					0	0	0			REV__tr|A0A553SUG6|A0A553SUG6_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06990PE=3SV=1	REV__tr|A0A553SUG6|A0A553SUG6_NIACILLMclassflavin-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06990PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.3278198242188	2	528.328611	1054.64267	0.83538	0.00044135	-1.0239	-0.00054094	-0.18848	-9.9581E-05	528.3278477712166	129.01	4.1824	127.56	127.15	131.33	-1.4565					215	84	4	0	0	0	0.3976	1	12522	12522		68.787	12.066	1	383740	+		60170	31073	49636	49682	65966	65966					0.11753265039237704
VIPSQDDHVLE	11	Unmodified	_VIPSQDDHVLE_					0	0	0		ENSG00000160218|ENST00000291574|TRAPPC10	ENSG00000160218|ENST00000291574|TRAPPC10	ENSG00000160218|ENST00000291574|TRAPPC10	MULTI-MSMS	OvCa9_classI_Rep2	2	626.3120727539062	2	626.314417	1250.61428	-1.9352	-0.001212	-3.1955	-0.0020014	-5.1307	-0.0032134	626.3122135037435	51.065	2.6216	48.271	47.827	50.449	-2.794					97	52	3	0	0	0	0.60035	1	3325	3325		35.152	0.97948	1	202770			60171	6049	49637	49683	65967	65967					-0.0010012939865191584
VIPTWIPSL	9	Unmodified	_VIPTWIPSL_					0	0	0			REV__tr|A0A553SKH4|A0A553SKH4_NIACIAI-2EfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_18680PE=3SV=1	REV__tr|A0A553SKH4|A0A553SKH4_NIACIAI-2EfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_18680PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	513.302734375	2	513.305136	1024.59572	-0.90798	-0.00046607	-3.6367	-0.0018667	-4.5446	-0.0023328	513.303241645798	102.61	2.5703	101.93	101.49	104.06	-0.68459					128	51	4	0	0	0	0.21395	1	9424	9424		73.975	17.254	1	1179700	+		60172	30126	49638	49684	65968	65968					0.08440405488090619
VIPVRIHTI	9	Unmodified	_VIPVRIHTI_					0	0	0		MAT1A|p.T341Wfs*12|1|0.1|ENSG00000151224|chr10:80274584-80274585|-/CCCA|frameshift_variant;ENSG00000151224|ENST00000372213|MAT1A	MAT1A|p.T341Wfs*12|1|0.1|ENSG00000151224|chr10:80274584-80274585|-/CCCA|frameshift_variant	MAT1A|p.T341Wfs*12|1|0.1|ENSG00000151224|chr10:80274584-80274585|-/CCCA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	524.3395385742188	2	524.337301	1046.66005	1.0578	0.00055463	-0.39222	-0.00020565	0.66555	0.00034897	524.3371760351496	79.279	1.6081	79.279	78.54	80.148	0					71	39	4	0	0	0	0.18193	1	8099	8099		79.451	7.5735	1	4532600			60173	5541	49639	49685	65969	65969					0.1385860536488508
VIQEILLII	9	Unmodified	_VIQEILLII_					0	0	0			REV__ENSG00000198793|ENST00000361445|MTOR	REV__ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.313232421875	2	527.349543	1052.68453	-1.6099	-0.00084898	-1.3152	-0.00069357	-2.9251	-0.0015425	527.3487686639753	53.938	0.81967	50.691	50.517	51.336	-3.2474					31	15	3	0	0	0	0.027462	1	3353	3353		38.806	3.1879	1	56144	+		60174	23062	49640	49686	65970	65970					0.16029820727771948
VIQEILLII	9	Unmodified	_VIQEILLII_					0	0	0			REV__ENSG00000198793|ENST00000361445|MTOR	REV__ENSG00000198793|ENST00000361445|MTOR	MULTI-MATCH	OvCa9_classI_Rep2	2		2	527.349543	1052.68453	-1.4502	-0.00076474	-1.3093	-0.00069045	-2.7594	-0.0014552	527.3487076459633	53.422	0.79547	50.608	50.379	51.175	-2.8139	-0.041469	1.4218E-06	NaN	38.806	31	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40270	+		60175	23062	49640	49686							0.16029820727771948
VIQFAAMAKET	11	Unmodified	_VIQFAAMAKET_					0	0	0			REV__ENSG00000151687|ENST00000684021|ANKAR	REV__ENSG00000151687|ENST00000684021|ANKAR	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.5547180175781	3	403.549641	1207.62709	0.52472	0.00021175	2.9362	0.0011849	3.461	0.0013967	403.5507583921456	37.321	0.41697	37.321	37.114	37.531	0					15	8	2	0	0	0	0.02595	1	2057	2057		26.75	5.9126	1	675800	+		60176	20247	49641	49687	65971	65971					0.03158610459854572
VIQGQLVSI	9	Unmodified	_VIQGQLVSI_					0	0	0			REV__tr|A0A7D6ZRQ2|A0A7D6ZRQ2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13105PE=4SV=1	REV__tr|A0A7D6ZRQ2|A0A7D6ZRQ2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13105PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	478.7937316894531	2	478.792392	955.570232	-0.12544	-6.006E-05	0.76674	0.00036711	0.6413	0.00030705	478.7926156912613	71.368	1.2652	71.368	71.109	72.374	0					62	30	4	0	0	0	0.064985	1	6886	6886		110.12	3.1124	1	6452400	+		60177	32163	49642	49688	65972	65972					0.0906693096563913
VIRALDLVT	9	Unmodified	_VIRALDLVT_					0	0	0		nc|ENSG00000159363|Q9NQ11-2|ATP13A2;nc|ENSG00000159363|Q9NQ11-3|ATP13A2;ENSG00000159363|ENST00000326735|ATP13A2;ATP13A2|p.P905Sfs*10|1|0.15|ENSG00000159363|chr1:16988371-16988372|-/A|frameshift_variant	nc|ENSG00000159363|Q9NQ11-2|ATP13A2	nc|ENSG00000159363|Q9NQ11-2|ATP13A2	MULTI-MSMS	OvCa9_classI_Rep2	2	500.3133850097656	2	500.313492	998.612431	0.59332	0.00029685	-0.99705	-0.00049884	-0.40373	-0.00020199	500.3129079797688	127.44	1.7293	127.21	126.84	128.57	-0.2359					109	34	4	0	0	0	0.61208	1	12589	12589		30.504	0	1	1360100			60178	6007	49643	49689	65973	65973					0.11306906374034043
VIRDQDSHI	9	Unmodified	_VIRDQDSHI_					0	0	0			REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	REV__ENST00000515682.5_1_4:8207046-8242679:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.3088989257812	2	541.783087	1081.55162	1.2255	0.00066397	-2.4874	-0.0013476	-1.2619	-0.00068366	541.7816832613332	144.7	0.48459	144.7	144.5	144.99	0					13	9	2	0	0	0	0.027462	1	16943	16943		40.778	0	1	66108	+		60179	18712	49644	49690	65974	65974					0.014107693237974672
VIREPPATVT	10	Unmodified	_VIREPPATVT_					0	0	0			REV__nc|ENSG00000124006|O75147-4|OBSL1	REV__nc|ENSG00000124006|O75147-4|OBSL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.3045654296875	2	541.813856	1081.61316	1.1909	0.00064524	4.4134	0.0023912	5.6043	0.0030365	541.8162599467719	105.66	0.52586	105.66	105.57	106.1	0					15	11	2	0	0	0	0.026891	1	11899	11899		24.519	11.707	1	164660	+		60180	18659	49645	49691	65975	65975					0.07561701023087153
VIRKIPALTE	10	Unmodified	_VIRKIPALTE_					0	0	0		nc|ENSG00000113163|Q9Y5P4-3|CERT1;nc|ENSG00000113163|Q9Y5P4-2|CERT1;ENSG00000113163|ENST00000643780|CERT1	nc|ENSG00000113163|Q9Y5P4-3|CERT1	nc|ENSG00000113163|Q9Y5P4-3|CERT1	MULTI-MSMS	OvCa9_classI_Rep3	3	570.3646240234375	2	570.360973	1138.70739	0.61321	0.00034975	2.7854	0.0015887	3.3986	0.0019384	570.3624601174047	66.945	1.9604	64.058	63.78	65.74	-2.8873					102	38	5	0	0	0	0.76627	1	2829	2829		23.042	3.0457	1	407820			60181	14965	49646	49692	65976	65976					0.14358839845181137
VIRKLGLSDTL	11	Unmodified	_VIRKLGLSDTL_					0	0	0			REV__tr|A0A553STU8|A0A553STU8_NIACIFour-carbonacidsugarkinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05650PE=3SV=1	REV__tr|A0A553STU8|A0A553STU8_NIACIFour-carbonacidsugarkinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05650PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	404.73846435546875	3	405.587084	1213.73942	1.3959	0.00056617	-0.565	-0.00022916	0.83093	0.00033702	405.5868017126045	58.059	0.60452	54.714	54.444	55.049	-3.3449					17	11	2	0	0	0	0.025746	1	3779	3779		12.433	5.4141	1	14493	+		60182	31014	49647	49693	65977	65977					0.14110207528347019
VIRKLGLSDTL	11	Unmodified	_VIRKLGLSDTL_					0	0	0			REV__tr|A0A553STU8|A0A553STU8_NIACIFour-carbonacidsugarkinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05650PE=3SV=1	REV__tr|A0A553STU8|A0A553STU8_NIACIFour-carbonacidsugarkinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05650PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	405.587084	1213.73942	0.6548	0.00026558	0.53691	0.00021776	1.1917	0.00048334	405.5872992523817	57.16	0.89283	54.368	54.08	54.972	-2.792	-0.17316	0.00037203	NaN	12.433	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24667	+		60183	31014	49647	49693							0.14110207528347019
VIRLVQGPEL	10	Unmodified	_VIRLVQGPEL_					0	0	0			REV__tr|A0A553SSA6|A0A553SSA6_NIACIDUF1989domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02750PE=4SV=1	REV__tr|A0A553SSA6|A0A553SSA6_NIACIDUF1989domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_02750PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	562.3417358398438	2	562.345323	1122.67609	-2.9015	-0.0016316	-0.70711	-0.00039764	-3.6086	-0.0020293	562.3448419475409	142.33	4.504	141.32	140	144.5	-1.0106					205	90	3	0	0	0	0.78463	1	11919	11919		20.947	1.8434	1	106680	+		60184	30816	49648	49694	65978	65978					0.11966266811123205
VIRNDEPVI	9	Unmodified	_VIRNDEPVI_					0	0	0		chr19:32731883-32738856|104|28.57|0.86|5.06|+|ENST00000647536|TDRD12,TDRD12;chr19:32798435-32800167|100|13.01|0.19|6.13|+|ENST00000647536|TDRD12,TDRD12;chr19:32821139-32826098|165|14.05|0.47|4.9|+|ENST00000647536|TDRD12,TDRD12;chr19:32818157-32821033|152|13.22|0.53|4.64|+|ENST00000647536|TDRD12,TDRD12;chr19:32815620-32818089|135|13.1|0.49|4.75|+|ENST00000647536|TDRD12,TDRD12;chr19:32813776-32815448|139|16.72|0.53|4.98|+|ENST00000647536|TDRD12,TDRD12;chr19:32811420-32813684|131|15.54|0.45|5.12|+|ENST00000647536|TDRD12,TDRD12;chr19:32810277-32811210|156|14.54|0.46|4.99|+|ENST00000647536|TDRD12,TDRD12;chr19:32807648-32810093|114|14.91|0.34|5.48|+|ENST00000647536|TDRD12,TDRD12;chr19:32801873-32802656|139|14.81|0.36|5.35|+|ENST00000647536|TDRD12,TDRD12;chr19:32800772-32801756|126|14.63|0.37|5.31|+|ENST00000647536|TDRD12,TDRD12;chr19:32802789-32802922|108|15.69|0.41|5.25|+|ENST00000647536|TDRD12,TDRD12;chr19:32797891-32798308|119|12.01|0.22|5.75|+|ENST00000647536|TDRD12,TDRD12;chr19:32794813-32797735|98|12.42|0.27|5.5|+|ENST00000647536|TDRD12,TDRD12;chr19:32791068-32794628|119|12.08|0.3|5.31|+|ENST00000647536|TDRD12,TDRD12;chr19:32790591-32790964|124|10.79|0.19|5.84|+|ENST00000647536|TDRD12,TDRD12;chr19:32749869-32755992|122|31.96|0.99|5.02|+|ENST00000647536|TDRD12,TDRD12;chr19:32748531-32749784|99|29.09|0.97|4.91|+|ENST00000647536|TDRD12,TDRD12;chr19:32738992-32742781|92|29.05|0.94|4.95|+|ENST00000647536|TDRD12,TDRD12;chr19:32800358-32800644|113|15.08|0.33|5.5|+|ENST00000647536|TDRD12,TDRD12;ENSG00000173809|ENST00000639142|TDRD12	chr19:32731883-32738856|104|28.57|0.86|5.06|+|ENST00000647536|TDRD12,TDRD12	chr19:32731883-32738856|104|28.57|0.86|5.06|+|ENST00000647536|TDRD12,TDRD12	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3317260742188	2	527.798206	1053.58186	-0.51432	-0.00027146	-2.8692	-0.0015143	-3.3835	-0.0017858	527.7975616162258	50.875	0.78018	50.875	50.594	51.374	0					24	17	2	0	0	0	0.027426	1	3917	3917		35.618	0	1	230110			60185	411	49649	49695	65979	65979					0.057211279889770594
VIRPQTPPPQ	10	Unmodified	_VIRPQTPPPQ_					0	0	0		nc|ENSG00000188827|Q8IY92-2|SLX4;ENSG00000188827|ENST00000294008|SLX4	nc|ENSG00000188827|Q8IY92-2|SLX4	nc|ENSG00000188827|Q8IY92-2|SLX4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	566.3121948242188	2	566.827298	1131.64004	1.0291	0.00058333	-3.6006	-0.0020409	-2.5715	-0.0014576	566.8249306837603	60.867	0.75027	57.437	57.144	57.894	-3.43					25	14	2	0	0	0	0.026994	1	4115	4115		32.812	6.1195	1	55092			60186	8508	49650	49696	65980	65980					0.07948809634262943
VIRPVLLTL	9	Unmodified	_VIRPVLLTL_					0	0	0		ENSG00000205495|ENST00000380370|OR52J3	ENSG00000205495|ENST00000380370|OR52J3	ENSG00000205495|ENST00000380370|OR52J3	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.3488159179688	2	512.349877	1022.6852	2.4987	0.0012802	-2.2934	-0.001175	0.20531	0.00010519	512.3485567813648	130.31	1.0325	128.83	128.66	129.69	-1.4779					38	20	3	0	0	0	0.67509	1	12518	12518		23.042	0	1	32401			60187	9074	49651	49697	65981	65981					0.17476660167460523
VIRQHTATIR	10	Unmodified	_VIRQHTATIR_					0	0	0		ZNF462|p.Q1930Rfs*3|1|0.04|ENSG00000148143|chr9:106929701-106929701|A/-|frameshift_variant;ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;ZNF462|p.K1242Rfs*39|1|0.04|ENSG00000148143|chr9:106927636-106927636|A/-|frameshift_variant;nc|ENSG00000148143|Q96JM2-2|ZNF462	ZNF462|p.Q1930Rfs*3|1|0.04|ENSG00000148143|chr9:106929701-106929701|A/-|frameshift_variant	ZNF462|p.Q1930Rfs*3|1|0.04|ENSG00000148143|chr9:106929701-106929701|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8570556640625	2	597.856921	1193.69929	-0.38237	-0.0002286	-0.55263	-0.00033039	-0.935	-0.00055899	597.8564103488146	145.14	4.0194	143.71	141.51	145.53	-1.4357					229	77	4	0	0	0	0.762	1	14241	14241		23.523	2.5758	1	217250			60188	5386	49652	49698	65982	65982					0.11018705648439209
VIRRLQRHH	9	Unmodified	_VIRRLQRHH_					0	0	0		ENST00000339020.7_1_5:60454855-60455020:-|nuORF	ENST00000339020.7_1_5:60454855-60455020:-|nuORF	ENST00000339020.7_1_5:60454855-60455020:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	607.8486938476562	2	607.870697	1213.72684	-0.24125	-0.00014665	2.4673	0.0014998	2.226	0.0013531	607.8718656413539	69.788	0.53116	66.307	65.91	66.442	-3.4812					20	10	3	0	0	0	0.027462	1	5253	5253		18.324	0	1	28923			60189	10544	49653	49699	65983	65983					0.12852653699360417
VIRTVSIS	8	Unmodified	_VIRTVSIS_					0	0	0		nc|ENSG00000248905|Q68DA7-2|FMN1	nc|ENSG00000248905|Q68DA7-2|FMN1	nc|ENSG00000248905|Q68DA7-2|FMN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	437.2752380371094	2	437.77146	873.528367	-0.10356	-4.5336E-05	-2.6055	-0.0011406	-2.7091	-0.001186	437.7701501610266	65.811	0.47035	65.811	65.625	66.096	0					20	11	2	0	0	0	0.028476	1	6042	6042		35.201	9.7505	1	429780			60190	15347	49654	49700	65984	65984					0.08654375277126292
VIRWALPLLM	10	Unmodified	_VIRWALPLLM_					0	0	0			REV__nc|ENSG00000112237|P24863-2|CCNC	REV__nc|ENSG00000112237|P24863-2|CCNC	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3697509765625	2	606.370287	1210.72602	-2.264	-0.0013728	1.0363	0.00062836	-1.2278	-0.00074448	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.76627	1	12553	12553		23.042	3.0457	1	205770	+		60191	18088	49655	49701	65985	65985					0.12908678215421787
VISAAAISLT	10	Unmodified	_VISAAAISLT_					0	0	0			REV__tr|A0A553SPE7|A0A553SPE7_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_26270PE=3SV=1	REV__tr|A0A553SPE7|A0A553SPE7_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_26270PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	474.22564697265625	2	473.2844	944.554247	1.3229	0.0006261	-2.1097	-0.00099849	-0.78683	-0.00037239	473.2835894021784	86.732	0.94139	84.105	83.908	84.85	-2.6269					24	18	2	0	0	0	0.026752	1	7413	7413		53.351	21.397	1	22458	+		60192	30530	49656	49702	65986	65986					0.07975224728750163
VISAAAISLT	10	Unmodified	_VISAAAISLT_					0	0	0			REV__tr|A0A553SPE7|A0A553SPE7_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_26270PE=3SV=1	REV__tr|A0A553SPE7|A0A553SPE7_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_26270PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	473.2844	944.554247	-1.3609	-0.00064408	1.2981	0.00061438	-0.062756	-2.9701E-05	473.28507082535026	85.592	0.64268	84.101	83.85	84.493	-1.4906	-0.021657	0.0014107	NaN	53.351	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12925	+		60193	30530	49656	49702							0.07975224728750163
VISAAAISLT	10	Unmodified	_VISAAAISLT_					0	0	0			REV__tr|A0A553SPE7|A0A553SPE7_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_26270PE=3SV=1	REV__tr|A0A553SPE7|A0A553SPE7_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_26270PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	473.2844	944.554247	-0.4134	-0.00019566	0.64264	0.00030415	0.22923	0.00010849	473.2846617419279	86.382	0.85448	84.162	83.936	84.79	-2.2203	0.039281	0.0007903	NaN	53.351	26	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25203	+		60194	30530	49656	49702							0.07975224728750163
VISAIMRKI	9	Unmodified	_VISAIMRKI_					0	0	0			REV__tr|A0A7D6VR59|A0A7D6VR59_9CLOTCarbohydratekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18105PE=4SV=1	REV__tr|A0A7D6VR59|A0A7D6VR59_9CLOTCarbohydratekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18105PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.794921875	2	515.825712	1029.63687	-2.2034	-0.0011366	-3.4038	-0.0017557	-5.6071	-0.0028923	515.8238950639417	87.797	1.2114	85.171	84.799	86.01	-2.6269					48	23	3	0	0	0	0.027343	1	7460	7460		79.451	7.5735	1	155730	+		60195	31390	49657	49703	65987	65987					0.12323843255899192
VISAIMRKI	9	Unmodified	_VISAIMRKI_					0	0	0			REV__tr|A0A7D6VR59|A0A7D6VR59_9CLOTCarbohydratekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18105PE=4SV=1	REV__tr|A0A7D6VR59|A0A7D6VR59_9CLOTCarbohydratekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18105PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.825712	1029.63687	-0.12968	-6.6893E-05	-3.8478	-0.0019848	-3.9775	-0.0020517	515.8235511686488	86.292	1.1884	84.801	84.444	85.632	-1.4906	-0.23072	-0.00023899	NaN	79.451	54	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129530	+		60196	31390	49657	49703							0.12323843255899192
VISAIMRKI	9	Unmodified	_VISAIMRKI_					0	0	0			REV__tr|A0A7D6VR59|A0A7D6VR59_9CLOTCarbohydratekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18105PE=4SV=1	REV__tr|A0A7D6VR59|A0A7D6VR59_9CLOTCarbohydratekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18105PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	515.825712	1029.63687	-0.28235	-0.00014564	-3.4581	-0.0017838	-3.7404	-0.0019294	515.823750724902	87.3	1.2306	85.124	84.784	86.015	-2.1768	0.091939	0.00016309	NaN	79.451	57	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187940	+		60197	31390	49657	49703							0.12323843255899192
VISCLLNSC	9	Unmodified	_VISCLLNSC_					0	0	0		ENST00000481519.5_1_7:148975234-148975309:+|nuORF	ENST00000481519.5_1_7:148975234-148975309:+|nuORF	ENST00000481519.5_1_7:148975234-148975309:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	476.7643737792969	2	476.235538	950.456524	-0.39129	-0.00018635	-0.31336	-0.00014923	-0.70465	-0.00033558	476.23514689116655	33.674	0.53352	33.674	33.483	34.017	0					21	10	3	0	0	0	0.027462	1	1555	1555		14.865	0	1	64089			60198	12547	49658	49704	65988	65988					-0.020686234632421474
VISCSSIVS	9	Unmodified	_VISCSSIVS_					0	0	0			REV__ENST00000468633.1_1_10:23408104-23409788:+|nuORF	REV__ENST00000468633.1_1_10:23408104-23409788:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	447.7355651855469	2	447.733686	893.452819	2.4692	0.0011056	1.8114	0.00081102	4.2806	0.0019166	447.73432565366414	128.35	0.84058	128.35	128.04	128.88	0					25	17	3	0	0	0	0.48324	1	14862	14862		44.117	5.3107	1	111600	+		60199	26230	49659	49705	65989	65989					0.0018303003455457656
VISDDVLVI	9	Unmodified	_VISDDVLVI_					0	0	0			REV__ENST00000496669.1_1_3:87100344-87100812:-|nuORF	REV__ENST00000496669.1_1_3:87100344-87100812:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	486.78521728515625	2	486.784233	971.553913	-0.65795	-0.00032028	1.7634	0.00085839	1.1054	0.00053811	486.7849740245438	73.688	1.2894	71.201	70.727	72.016	-2.4873					78	25	4	0	0	0	0.34496	1	3627	3627		57.811	8.6005	1	611920	+		60200	18840	49660	49706	65990	65990					0.0669980500889551
VISDDVLVI	9	Unmodified	_VISDDVLVI_					0	0	0			REV__ENST00000496669.1_1_3:87100344-87100812:-|nuORF	REV__ENST00000496669.1_1_3:87100344-87100812:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.7862548828125	2	486.784233	971.553913	-0.0090994	-4.4294E-06	0.32166	0.00015658	0.31256	0.00015215	486.78425321749165	74.933	0.67478	71.702	71.483	72.157	-3.2308					25	13	2	0	0	0	0.13154	1	5885	5885		88.643	6.3378	1	636500	+		60201	18840	49660	49706	65991	65991					0.0669980500889551
VISEELDKP	9	Unmodified	_VISEELDKP_					0	0	0			REV__ENSG00000167202|ENST00000300584|TBC1D2B	REV__ENSG00000167202|ENST00000300584|TBC1D2B	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.82373046875	2	515.276772	1028.53899	1.4766	0.00076084	-2.3938	-0.0012335	-0.91727	-0.00047265	515.2756745034345	120.19	0.54095	119.17	118.87	119.41	-1.0271					11	8	2	0	0	0	0.027462	1	9121	9121		23.042	0	1	16011	+		60202	21262	49661	49707	65992	65992					0.025863131408868867
VISFAQKVSV	10	Unmodified	_VISFAQKVSV_					0	0	0		ENST00000475011.1_1_7:100230563-100231157:-|nuORF	ENST00000475011.1_1_7:100230563-100231157:-|nuORF	ENST00000475011.1_1_7:100230563-100231157:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	539.3182983398438	2	539.318774	1076.623	0.13855	7.4723E-05	-0.35134	-0.00018949	-0.21279	-0.00011476	539.3184004878584	126.78	1.1383	126.54	126.24	127.38	-0.2359					45	22	3	0	0	0	0.58067	1	12397	12397		44.377	5.1244	1	124630			60203	12442	49662	49708	65993	65993					0.08774889028472899
VISINIADI	9	Unmodified	_VISINIADI_					0	0	0			REV__tr|A0A7D6W0N1|A0A7D6W0N1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00110PE=4SV=1	REV__tr|A0A7D6W0N1|A0A7D6W0N1_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00110PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.8200378417969	2	479.2844	956.554247	2.0781	0.00099598	-1.4717	-0.00070537	0.60635	0.00029061	479.28624295528454	92.077	0.92985	92.077	91.372	92.301	0					40	21	3	0	0	0	0.027462	1	9848	9848		20.947	0	1	1077000	+		60204	31860	49663	49709	65994	65994					0.0742322472875685
VISNFVALI	9	Unmodified	_VISNFVALI_					0	0	0			REV__tr|A0A7D6VQR5|A0A7D6VQR5_9CLOTAECfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23310PE=4SV=1	REV__tr|A0A7D6VQR5|A0A7D6VQR5_9CLOTAECfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23310PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.2980041503906	2	488.29731	974.580068	-1.012	-0.00049416	1.0324	0.00050413	0.020404	9.963E-06	488.29763994024694	124.62	1.6404	123.23	122.82	124.46	-1.3908					82	31	4	0	0	0	0.31747	1	11839	11839		60.972	0	1	255520	+		60205	31352	49664	49710	65995	65995					0.0917611897103825
VISRVNALA	9	Unmodified	_VISRVNALA_					0	0	0		nc|ENSG00000180264|Q7Z7M1|ADGRD2;ENSG00000180264|ENST00000696331|ADGRD2	nc|ENSG00000180264|Q7Z7M1|ADGRD2	nc|ENSG00000180264|Q7Z7M1|ADGRD2	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.7890930175781	2	471.790184	941.565815	-0.23491	-0.00011083	0.15446	7.2875E-05	-0.080447	-3.7954E-05	471.7901203345079	42.468	1.6027	39.487	38.645	40.247	-2.9804					65	30	3	0	0	0	0.50149	1	1977	1977		42.396	3.1433	1	271720			60206	7867	49665	49711	65996	65996					0.09269466542741611
VISVAIFLLYT	11	Unmodified	_VISVAIFLLYT_					0	0	0			REV__tr|A0A553SSV0|A0A553SSV0_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03775PE=3SV=1	REV__tr|A0A553SSV0|A0A553SSV0_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_03775PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8699951171875	2	619.873382	1237.73221	-2.7857	-0.0017268	-3.6209	-0.0022445	-6.4066	-0.0039713	619.8709153162803	147.4	3.9416	146.45	144.36	148.3	-0.9512					241	78	4	0	0	0	0.69455	1	12548	12548		31.53	13.268	1	225770	+		60207	30883	49666	49712	65997	65997					0.12285474927944051
VISVPLNLVR	10	Unmodified	_VISVPLNLVR_					0	0	0		nc|ENSG00000139364|Q14DG7|TMEM132B;ENSG00000139364|ENST00000682704|TMEM132B;ENST00000534945.2_1_12:125834026-126068624:+|nuORF;nc|ENSG00000139364|Q14DG7-2|TMEM132B;TMEM132B|p.E609Rfs*32|1|0.03|ENSG00000139364|chr12:125650878-125650879|-/C|frameshift_variant	nc|ENSG00000139364|Q14DG7|TMEM132B	nc|ENSG00000139364|Q14DG7|TMEM132B	MULTI-MSMS	OvCa9_classI_Rep2	2	555.3530883789062	2	555.355691	1108.69683	-4.1933	-0.0023288	0.44804	0.00024882	-3.7453	-0.00208	555.3557970844861	158.57	1.1439	158.34	158.06	159.2	-0.22696					59	23	4	0	0	0	0.7759	1	16121	16121		21.96	1.013	1	239990			60208	4770	49667	49713	65998	65998					0.14682857190791765
VISVYSTMV	9	Unmodified	_VISVYSTMV_					0	0	0		nc|ENSG00000080815|P49768-7|PSEN1	nc|ENSG00000080815|P49768-7|PSEN1	nc|ENSG00000080815|P49768-7|PSEN1	MULTI-MSMS	OvCa9_classI_Rep2	2	499.7652282714844	2	499.764986	997.515419	0.42626	0.00021303	-0.30435	-0.00015211	0.1219	6.0922E-05	499.76512722989173	126.31	4.05	126.07	125.5	129.55	-0.2359					192	81	3	0	0	0	0.21395	1	12376	12376		73.975	0	1	11682000			60209	14901	49668	49714	65999	65999					0.016561761027446664
VISVYSTMV	9	Unmodified	_VISVYSTMV_					0	0	0		nc|ENSG00000080815|P49768-7|PSEN1	nc|ENSG00000080815|P49768-7|PSEN1	nc|ENSG00000080815|P49768-7|PSEN1	MULTI-MSMS	OvCa9_classI_Rep3	3	499.76531982421875	2	499.764986	997.515419	0.8461	0.00042285	-0.85495	-0.00042727	-0.0088517	-4.4238E-06	499.7649286167221	127.27	5.5139	126.2	124.35	129.86	-1.0715					229	108	5	0	0	0	0.36502	1	10018	10018		55.504	0	1	11725000			60210	14901	49668	49714	66000	66000					0.016561761027446664
VISVYSTMV	9	Unmodified	_VISVYSTMV_					0	0	0		nc|ENSG00000080815|P49768-7|PSEN1	nc|ENSG00000080815|P49768-7|PSEN1	nc|ENSG00000080815|P49768-7|PSEN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.7654724121094	2	499.764986	997.515419	-1.053	-0.00052626	0.72527	0.00036247	-0.32774	-0.00016379	499.76572667649543	127.6	4.5409	126.16	125.39	129.93	-1.4357					197	90	5	0	0	0	0.36502	1	12214	12214		55.504	0.72789	1	12586000			60211	14901	49668	49714	66001	66001					0.016561761027446664
VITETVVEV	9	Unmodified	_VITETVVEV_					0	0	0		nc|ENSG00000109381|Q15723-4|ELF2;nc|ENSG00000109381|Q15723-2|ELF2;nc|ENSG00000109381|Q15723-3|ELF2;nc|ENSG00000109381|Q15723-1|ELF2;ENSG00000109381|ENST00000686138|ELF2;ENST00000514606.1_1_4:139988805-140005344:-|nuORF	nc|ENSG00000109381|Q15723-4|ELF2	nc|ENSG00000109381|Q15723-4|ELF2	MULTI-MSMS	OvCa99_classI_Rep5	1	494.7837219238281	2	494.78169	987.548827	1.9563	0.00096796	0.40889	0.00020231	2.3652	0.0011703	494.7817770546899	106.6	1.3315	106.6	106.27	107.6	0					64	30	4	0	0	0	0.027416	1	11992	11992		138.24	31.827	1	3981500			60212	2711	49669	49715	66002	66002					0.054555011462980474
VITIIVSQK	9	Unmodified	_VITIIVSQK_					0	0	0			REV__ENSG00000128606|ENST00000339431|LRRC17	REV__ENSG00000128606|ENST00000339431|LRRC17	MULTI-MSMS	OvCa9_classI_Rep3	3	500.8237609863281	2	500.823692	999.632832	1.0654	0.00053359	0.2043	0.00010232	1.2697	0.00063591	500.82361488266986	63.401	2.6056	60.367	60.113	62.718	-3.0339					105	51	3	0	0	0	0.62352	1	2432	2432		29.15	0	1	62518	+		60213	18864	49670	49716	66003	66003					0.1330007703385263
VITKPYSIS	9	Unmodified	_VITKPYSIS_					0	0	0		tr|A0A553SGN1|A0A553SGN1_NIACIadeninedeaminaseOS=NialliacirculansOX=1397GN=CEQ21_11155PE=3SV=1	tr|A0A553SGN1|A0A553SGN1_NIACIadeninedeaminaseOS=NialliacirculansOX=1397GN=CEQ21_11155PE=3SV=1	tr|A0A553SGN1|A0A553SGN1_NIACIadeninedeaminaseOS=NialliacirculansOX=1397GN=CEQ21_11155PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.2923583984375	2	504.292225	1006.5699	1.8388	0.00092727	-1.335	-0.00067325	0.50371	0.00025402	504.291175899768	130.15	1.2309	128.67	128.17	129.4	-1.4779					43	24	2	0	0	0	0.56889	1	12482	12482		35.618	7.364	1	43213			60214	33176	49671	49717	66004	66004					0.06687511245809219
VITKPYSIS	9	Unmodified	_VITKPYSIS_					0	0	0		tr|A0A553SGN1|A0A553SGN1_NIACIadeninedeaminaseOS=NialliacirculansOX=1397GN=CEQ21_11155PE=3SV=1	tr|A0A553SGN1|A0A553SGN1_NIACIadeninedeaminaseOS=NialliacirculansOX=1397GN=CEQ21_11155PE=3SV=1	tr|A0A553SGN1|A0A553SGN1_NIACIadeninedeaminaseOS=NialliacirculansOX=1397GN=CEQ21_11155PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	504.292225	1006.5699	0.6533	0.00032945	-0.35374	-0.00017839	0.29956	0.00015107	504.2918377506333	128.98	1.0884	128.75	128.38	129.46	-0.22696	0.055802	-3.953E-06	NaN	35.618	35	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41137			60215	33176	49671	49717							0.06687511245809219
VITKPYSIS	9	Unmodified	_VITKPYSIS_					0	0	0		tr|A0A553SGN1|A0A553SGN1_NIACIadeninedeaminaseOS=NialliacirculansOX=1397GN=CEQ21_11155PE=3SV=1	tr|A0A553SGN1|A0A553SGN1_NIACIadeninedeaminaseOS=NialliacirculansOX=1397GN=CEQ21_11155PE=3SV=1	tr|A0A553SGN1|A0A553SGN1_NIACIadeninedeaminaseOS=NialliacirculansOX=1397GN=CEQ21_11155PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	504.292225	1006.5699	0.074346	3.7492E-05	0.60061	0.00030288	0.67496	0.00034038	504.2920446379027	129.77	1.1376	128.66	128.29	129.43	-1.1121	-0.032136	0.00095859	NaN	35.618	36	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27069			60216	33176	49671	49717							0.06687511245809219
VITLDTSFE	9	Unmodified	_VITLDTSFE_					0	0	0		ENSG00000183454|ENST00000330684|GRIN2A;nc|ENSG00000183454|Q12879-2|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	ENSG00000183454|ENST00000330684|GRIN2A	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.7746887207031	2	512.763497	1023.51244	1.4796	0.00075866	3.7875	0.0019421	5.2671	0.0027008	512.7653951169798	148.97	0.7738	148.97	148.67	149.44	0					23	15	2	0	0	0	0.027462	1	17422	17422		25.45	10.786	1	87973			60217	8075	49672	49718	66005	66005					0.0016262424957176336
VITLLMDEPL	10	Unmodified	_VITLLMDEPL_					0	0	0		ENSG00000176177|ENST00000325157|ENTHD1	ENSG00000176177|ENST00000325157|ENTHD1	ENSG00000176177|ENST00000325157|ENTHD1	MSMS	OvCa99_classI_Rep5	1	572.3270263671875	2	572.320125	1142.6257	NaN	NaN	NaN	NaN	NaN	NaN	NaN	120.51	1	120.51	120.01	121.01	0								0	0	0	0.11992	1	13849	13849		60.972	10.947	1				60218	7588	49673	49719	66006	66006					0.06008976371094832
VITPVLLHF	9	Unmodified	_VITPVLLHF_					0	0	0		nc|ENSG00000175606|Q9BUB7-2|TMEM70;ENSG00000175606|ENST00000312184|TMEM70	nc|ENSG00000175606|Q9BUB7-2|TMEM70	nc|ENSG00000175606|Q9BUB7-2|TMEM70	MULTI-MSMS	OvCa99_classI_Rep5	1	519.822265625	2	519.820953	1037.62735	0.7611	0.00039564	1.1301	0.00058747	1.8912	0.0009831	519.8213971139469	131.12	1.1849	131.12	130.53	131.72	0					65	24	4	0	0	0	0.1595	2	15232	15208;15232		83.287	42.715	1	874390			60219	7557	49674	49720	66007;66008	66008					0.11004398242016578
VITSSRTTIS	10	Unmodified	_VITSSRTTIS_					0	0	0		ENSG00000181143|ENST00000397910|MUC16;MUC16|p.P9131Lfs*70|1|0.1|ENSG00000181143|chr19:8949378-8949379|-/CATCCTTCCACAA|frameshift_variant;MUC16|p.F9515*|1|0.24|ENSG00000181143|chr19:8948225-8948226|AA/-|frameshift_variant;MUC16|p.T9803Vfs*24|1|0.05|ENSG00000181143|chr19:8947363-8947364|-/GGAC|frameshift_variant;MUC16|p.D9802Vfs*25|1|0.05|ENSG00000181143|chr19:8947365-8947366|-/ATCAACAACACCCAACTGGGTAGAAA|frameshift_variant;MUC16|p.E8637Kfs*10|1|0.09|ENSG00000181143|chr19:8950858-8950861|TCTC/-|frameshift_variant	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	OvCa99_classI_Rep5	1	532.7999877929688	2	532.800946	1063.58734	1.0847	0.00057795	-3.5578	-0.0018956	-2.4731	-0.0013177	532.7990838303	101.38	1.3598	101.38	101.06	102.42	0					77	31	4	0	0	0	0.5675	1	11290	11290		45.972	3.5761	1	8485900			60220	7920	49675	49721	66009	66009					0.058088067808284904
VITVATLVSL	10	Unmodified	_VITVATLVSL_					0	0	0		nc|ENSG00000169507|Q08AI6-2|SLC38A11;nc|ENSG00000169507|Q08AI6|SLC38A11;ENSG00000169507|ENST00000685975|SLC38A11	nc|ENSG00000169507|Q08AI6-2|SLC38A11	nc|ENSG00000169507|Q08AI6-2|SLC38A11	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.3029479980469	2	508.323525	1014.6325	-1.0706	-0.00054422	1.7768	0.0009032	0.70621	0.00035898	508.32391078668763	89.022	0.69008	86.42	86.034	86.725	-2.6027					19	13	2	0	0	0	0.026582	1	7646	7646		60.972	9.6365	1	24196			60221	7015	49676	49722	66010	66010					0.1257665731399129
VITVSKTVK	9	Unmodified	_VITVSKTVK_					0	0	0			REV__ENSG00000182631|ENST00000330120|RXFP3	REV__ENSG00000182631|ENST00000330120|RXFP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.79931640625	2	487.815867	973.617182	1.3021	0.00063516	-2.4273	-0.0011841	-1.1253	-0.00054892	487.81469944200995	79.33	0.11131	79.33	79.24	79.352	0					4	2	2	0	0	0	0.027462	1	8076	8076		31.955	6.3808	1	301530	+		60222	22306	49677	49723	66011	66011					0.12931790516802266
VIVAGIVRLG	10	Unmodified	_VIVAGIVRLG_					0	0	0		ENSG00000155465|ENST00000674313|SLC7A7;SLC7A7|p.S266Ifs*29|1|0.04|ENSG00000155465|chr14:22776293-22776294|-/T|frameshift_variant	ENSG00000155465|ENST00000674313|SLC7A7	ENSG00000155465|ENST00000674313|SLC7A7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.7723693847656	2	498.831852	995.649151	-1.2986	-0.0006478	1.1208	0.00055908	-0.17785	-8.8716E-05	498.8322326773205	71.866	0.77571	68.41	68.222	68.998	-3.4563					20	15	2	0	0	0	0.026752	1	5475	5475		44.117	9.9443	1	37622			60223	5785	49678	49724	66012	66012					0.15115202990602938
VIVAGIVRLG	10	Unmodified	_VIVAGIVRLG_					0	0	0		ENSG00000155465|ENST00000674313|SLC7A7;SLC7A7|p.S266Ifs*29|1|0.04|ENSG00000155465|chr14:22776293-22776294|-/T|frameshift_variant	ENSG00000155465|ENST00000674313|SLC7A7	ENSG00000155465|ENST00000674313|SLC7A7	MULTI-MATCH	OvCa9_classI_Rep3	3		2	498.831852	995.649151	0.18069	9.0133E-05	-0.1867	-9.3132E-05	-0.0060123	-2.9991E-06	498.8316025163735	70.886	1.1625	68.167	67.801	68.964	-2.7196	-0.12154	-0.00042796	NaN	44.117	35	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60201			60224	5785	49678	49724							0.15115202990602938
VIVAMKITQ	9	Unmodified	_VIVAMKITQ_					0	0	0			REV__tr|A0A553STM6|A0A553STM6_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05440PE=3SV=1	REV__tr|A0A553STM6|A0A553STM6_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05440PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	502.7804260253906	2	501.804445	1001.59434	-0.74199	-0.00037233	0.6083	0.00030525	-0.13369	-6.7087E-05	501.8046082678945	88.598	1.0808	86.467	86.061	87.141	-2.1309					32	21	2	0	0	0	0.027462	1	5346	5346		26.693	4.733	1	44334	+		60225	30985	49679	49725	66013	66013					0.09360448127665677
VIVDRGEPY	9	Unmodified	_VIVDRGEPY_					0	0	0			REV__nc|ENSG00000076555|O00763-3|ACACB	REV__nc|ENSG00000076555|O00763-3|ACACB	MULTI-MSMS	OvCa9_classI_Rep3	3	524.279296875	2	524.277106	1046.53966	1.2201	0.00063968	1.7979	0.0009426	3.018	0.0015823	524.2778574863617	62.52	2.1768	59.486	58.872	61.049	-3.0339					76	45	2	0	0	0	0.5811	1	2279	2279		34.173	1.3601	1	81064	+		60226	16994	49680	49726	66014	66014					0.01825152580613576
VIVEGSTP	8	Unmodified	_VIVEGSTP_					0	0	0			REV__tr|A0A553SQ09|A0A553SQ09_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15360PE=4SV=1	REV__tr|A0A553SQ09|A0A553SQ09_NIACIATP-bindingcassettedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_15360PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	401.22247314453125	2	401.221268	800.427984	3.2289	0.0012955	1.2014	0.00048202	4.4303	0.0017775	401.2215854687907	87.28	1.1988	87.28	87.013	88.212	0					54	28	3	0	0	0	0.56113	1	9230	9230		71.378	11.084	1	2384400	+		60227	30594	49681	49727	66015	66015					0.019787182234722422
VIVEIPHF	8	Unmodified	_VIVEIPHF_					0	0	0		ENSG00000145362|ENST00000357077|ANK2;nc|ENSG00000145362|Q01484-2|ANK2;nc|ENSG00000145362|Q01484-5|ANK2;nc|ENSG00000029534|P16157-5|ANK1;nc|ENSG00000029534|P16157-14|ANK1;nc|ENSG00000029534|P16157-12|ANK1;nc|ENSG00000029534|P16157-21|ANK1;nc|ENSG00000029534|P16157|ANK1;ENSG00000029534|ENST00000289734|ANK1;nc|ENSG00000029534|P16157-16|ANK1;ENST00000524227.5_1_8:41525962-41555361:-|nuORF;nc|ENSG00000029534|P16157-2|ANK1;nc|ENSG00000029534|P16157-15|ANK1;nc|ENSG00000029534|P16157-10|ANK1;nc|ENSG00000029534|P16157-13|ANK1;nc|ENSG00000029534|P16157-4|ANK1;nc|ENSG00000029534|P16157-7|ANK1;nc|ENSG00000029534|P16157-6|ANK1;nc|ENSG00000029534|P16157-9|ANK1;nc|ENSG00000029534|P16157-11|ANK1;nc|ENSG00000029534|P16157-8|ANK1;ENSG00000151150|ENST00000280772|ANK3;nc|ENSG00000151150|Q12955-5|ANK3;nc|ENSG00000151150|Q12955-4|ANK3;nc|ENSG00000151150|Q12955-6|ANK3;nc|ENSG00000151150|Q12955-7|ANK3	ENSG00000145362|ENST00000357077|ANK2;ENSG00000151150|ENST00000280772|ANK3	ENSG00000151150|ENST00000280772|ANK3	MULTI-SECPEP	OvCa9_classI_Rep3	3	476.79522705078125	2	477.276378	952.538203	1.852	0.0008839	-1.4311	-0.00068302	0.42089	0.00020088	477.2752663039176	111.2	1.6797	110.1	109.8	111.48	-1.1038					53	33	2	0	0	0	0.028476	1	8086	8086		23.037	1.3344	1	117060			60228	5537;5218	49682	49728	66016	66016					0.06003563282513369
VIVFLAKAW	9	Unmodified	_VIVFLAKAW_					0	0	0			REV__ENSG00000147570|ENST00000276570|DNAJC5B	REV__ENSG00000147570|ENST00000276570|DNAJC5B	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.8056030273438	2	523.823495	1045.63244	-1.0188	-0.00053366	-3.653	-0.0019135	-4.6717	-0.0024472	523.8214225127011	117.55	0.84325	117.42	117.06	117.91	-0.12869					30	16	3	0	0	0	0.027462	1	11257	11257		33.516	0	1	39534	+		60229	20072	49683	49729	66017	66017					0.11144702104638782
VIVFLRSK	8	Unmodified	_VIVFLRSK_					0	0	0		tr|A0A7D7A374|A0A7D7A374_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22615PE=4SV=1	tr|A0A7D7A374|A0A7D7A374_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22615PE=4SV=1	tr|A0A7D7A374|A0A7D7A374_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22615PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.787109375	2	481.313295	960.612037	-1.279	-0.00061558	1.4073	0.00067738	0.12839	6.1795E-05	481.3138315889065	106.88	0.78975	105	104.7	105.49	-1.8784					21	14	2	0	0	0	0.028476	1	9756	9756		18.324	1.8513	1	25122			60230	36106	49684	49730	66018	66018					0.130155314448416
VIVFLRSK	8	Unmodified	_VIVFLRSK_					0	0	0		tr|A0A7D7A374|A0A7D7A374_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22615PE=4SV=1	tr|A0A7D7A374|A0A7D7A374_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22615PE=4SV=1	tr|A0A7D7A374|A0A7D7A374_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22615PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	481.313295	960.612037	-0.6483	-0.00031204	0.80636	0.00038811	0.15806	7.6079E-05	481.3135180951771	105.31	0.79549	104.87	104.55	105.35	-0.43642	-0.02668	0.00026515	NaN	18.324	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18012			60231	36106	49684	49730							0.130155314448416
VIVFLRSK	8	Unmodified	_VIVFLRSK_					0	0	0		tr|A0A7D7A374|A0A7D7A374_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22615PE=4SV=1	tr|A0A7D7A374|A0A7D7A374_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22615PE=4SV=1	tr|A0A7D7A374|A0A7D7A374_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22615PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	481.313295	960.612037	0.57903	0.00027869	-0.6852	-0.0003298	-0.10617	-5.1102E-05	481.31286737831806	106.18	0.67857	104.83	104.61	105.29	-1.3482	-0.070894	-0.0011707	NaN	18.324	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16351			60232	36106	49684	49730							0.130155314448416
VIVGALIHSV	10	Unmodified	_VIVGALIHSV_					0	0	0		ENSG00000185313|ENST00000449082|SCN10A;SCN10A|p.S441Ffs*8|1|0.05|ENSG00000185313|chr3:38755902-38755927|AGGTGATCCATTGTGGGAGTGGAGAG/-|frameshift_variant;SCN10A|p.F1193Sfs*12|1|0.06|ENSG00000185313|chr3:38718756-38718757|-/G|frameshift_variant	ENSG00000185313|ENST00000449082|SCN10A	ENSG00000185313|ENST00000449082|SCN10A	MULTI-MSMS	OvCa99_classI_Rep5	1	504.3161926269531	2	504.316035	1006.61752	0.8954	0.00045157	0.4695	0.00023678	1.3649	0.00068834	504.31644615479536	105.71	0.91911	105.71	105.44	106.36	0					45	20	4	0	0	0	0.028201	1	11882	11882		138.24	7.2109	1	1002400			60233	8247	49685	49731	66019	66019					0.11447210236667615
VIVHDVFGR	9	Unmodified	_VIVHDVFGR_					0	0	0			REV__ENST00000331585.6_1_2:196447906-196448179:-|nuORF	REV__ENST00000331585.6_1_2:196447906-196448179:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.7671508789062	2	521.295633	1040.57671	-0.7097	-0.00036996	-0.12385	-6.4565E-05	-0.83355	-0.00043453	521.2951568378434	76.252	1.7668	73.88	73.518	75.285	-2.3715					57	33	3	0	0	0	0.027433	1	3941	3941		38.806	0	1	295130	+		60234	24537	49686	49732	66020	66020					0.0580486891703913
VIVKITHIG	9	Unmodified	_VIVKITHIG_					0	0	0			REV__ENST00000509936.5_1_12:112130513-112147506:+|nuORF	REV__ENST00000509936.5_1_12:112130513-112147506:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.71575927734375	2	490.318577	978.622602	-0.19862	-9.7388E-05	0.43879	0.00021515	0.24016	0.00011776	490.3186762482297	68.856	0.49646	68.856	68.649	69.145	0					25	11	3	0	0	0	0.027462	1	6524	6524		53.351	5.4358	1	667100	+		60235	26932	49687	49733	66021	66021					0.1324351409926976
VIVKPTNKL	9	Unmodified	_VIVKPTNKL_					0	0	0			REV__ENSG00000163510|ENST00000410053|CWC22	REV__ENSG00000163510|ENST00000410053|CWC22	MULTI-MSMS	OvCa9_classI_Rep3	3	506.3307189941406	2	506.331685	1010.64882	0.91139	0.00046147	-0.75798	-0.00038379	0.15341	7.7676E-05	506.33120142616923	123.84	0.92854	122.81	122.46	123.39	-1.0377					43	17	3	0	0	0	0.53483	1	9602	9602		39.253	0.44669	1	77962	+		60236	20843	49688	49734	66022	66022					0.14391783270752967
VIVLMERQVQI	11	Unmodified	_VIVLMERQVQI_					0	0	0			REV__ENSG00000074276|ENST00000261944|CDHR2	REV__ENSG00000074276|ENST00000261944|CDHR2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	443.27508544921875	3	443.263724	1326.76934	-0.68055	-0.00030166	-2.7419	-0.0012154	-3.4225	-0.0015171	443.2614711846808	69.35	1.1711	65.868	65.468	66.639	-3.4812					52	23	3	0	0	0	0.025551	1	5219	5219		37.508	5.474	1	68517	+		60237	16948	49689	49735	66023	66023					0.11902823202058244
VIVLSTAVTV	10	Unmodified	_VIVLSTAVTV_					0	0	0			REV__ENSG00000143515|ENST00000368489|ATP8B2	REV__ENSG00000143515|ENST00000368489|ATP8B2	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.82623291015625	2	501.3157	1000.61685	-0.86475	-0.00043351	-2.6044	-0.0013056	-3.4691	-0.0017391	501.3144164195048	66.156	0.34483	66.156	65.984	66.328	0					11	8	2	0	0	0	0.026639	1	6106	6106		44.117	0	1	403380	+		60238	19848	49690	49736	66024	66024					0.11656370796936244
VIVQGFLRE	9	Unmodified	_VIVQGFLRE_					0	0	0		tr|A0A553SH19|A0A553SH19_NIACISigma-70familyRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=CEQ21_11990PE=4SV=1	tr|A0A553SH19|A0A553SH19_NIACISigma-70familyRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=CEQ21_11990PE=4SV=1	tr|A0A553SH19|A0A553SH19_NIACISigma-70familyRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=CEQ21_11990PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	530.8140869140625	2	530.811116	1059.60768	1.8512	0.00098261	3.8443	0.0020406	5.6955	0.0030232	530.8129789800711	128.16	1.5432	128.16	127.9	129.45	0					75	32	4	0	0	0	0.22961	1	14888	14888		71.296	0	1	590840			60239	33223	49691	49737	66025	66025					0.08026022231297247
VIVQQPTE	8	Unmodified	_VIVQQPTE_					0	0	0		ENSG00000158639|ENST00000374955|PAGE5;nc|ENSG00000158639|Q96GU1|PAGE5	ENSG00000158639|ENST00000374955|PAGE5	ENSG00000158639|ENST00000374955|PAGE5	MULTI-MSMS	OvCa99_classI_Rep5	1	457.25396728515625	2	457.2531	912.491647	1.897	0.00086741	0.70006	0.0003201	2.5971	0.0011875	457.2532322930586	79.534	1.2954	79.534	79.276	80.571	0					63	31	4	0	0	0	0.12128	2	8123	8095;8123		138.48	0	1	3925500			60240	5967	49692	49738	66026;66027	66027					0.03190078660566087
VIVQTGPKL	9	Unmodified	_VIVQTGPKL_					0	0	0			REV__USP46-SCFD2|1|fusion	REV__USP46-SCFD2|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.80328369140625	2	477.80276	953.590967	-2.11	-0.0010082	2.2995	0.0010987	0.18954	9.0563E-05	477.8036012396216	149.24	0.90439	147.81	147.57	148.48	-1.4344					38	18	3	0	0	0	0.53483	1	14740	14740		39.253	7.298	1	51060	+		60241	22408	49693	49739	66028	66028					0.11231521345325746
VIVRGALT	8	Unmodified	_VIVRGALT_					0	0	0			REV__ENST00000523527.5_1_2:220250965-220252516:-|nuORF	REV__ENST00000523527.5_1_2:220250965-220252516:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	414.7699279785156	2	414.76872	827.522887	0.16015	6.6426E-05	-0.2242	-9.2993E-05	-0.064054	-2.6568E-05	414.7684576473128	61.682	0.74849	61.682	61.374	62.122	0					36	17	3	0	0	0	0.56195	1	5454	5454		71.296	10.324	1	2108100	+		60242	18657	49694	49740	66029	66029					0.10222696485311644
VIVRGALT	8	Unmodified	_VIVRGALT_					0	0	0			REV__ENST00000523527.5_1_2:220250965-220252516:-|nuORF	REV__ENST00000523527.5_1_2:220250965-220252516:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	414.76872	827.522887	0.16015	6.6426E-05	-0.2242	-9.2993E-05	-0.064054	-2.6568E-05	414.7684576473128	61.682	0.74849	61.682	61.374	62.122	0	0	0	NaN	71.296	36	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2108100	+		60243	18657	49694	49740							0.10222696485311644
VIVRVAGSSTG	11	Unmodified	_VIVRVAGSSTG_					0	0	0			REV__KCTD3|p.P411Lfs*25|1|0.13|ENSG00000136636|chr1:215604222-215604223|-/CTTACCCCATCCACTGCCTGCACCTGTTCCCT|frameshift_variant	REV__KCTD3|p.P411Lfs*25|1|0.13|ENSG00000136636|chr1:215604222-215604223|-/CTTACCCCATCCACTGCCTGCACCTGTTCCCT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3032836914062	2	523.303655	1044.59276	-2.1228	-0.0011108	2.0352	0.001065	-0.087543	-4.5811E-05	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.68757	2	11327	11327;11407		33.922	8.3476	1	183010	+		60244	19396	49695	49741	66030;66031	66030					0.07224530363282611
VIVSHNTSLAE	11	Unmodified	_VIVSHNTSLAE_					0	0	0			REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3	REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3	MULTI-MSMS	OvCa9_classI_Rep4_	4	585.3123779296875	2	585.311677	1168.6088	-1.3225	-0.00077405	0.66239	0.00038771	-0.66007	-0.00038634	585.312037287661	80.876	2.4858	78.166	77.417	79.902	-2.7106					137	50	5	0	0	0	0.23673	1	6663	6663		75.043	2.8001	1	1602700	+		60245	20190	49696	49742	66032	66032					0.031241918095247456
VIVTVPGVE	9	Unmodified	_VIVTVPGVE_					0	0	0		tr|A0A553SJ36|A0A553SJ36_NIACI2,3-bisphosphoglycerate-independentphosphoglyceratemutaseOS=NialliacirculansOX=1397GN=gpmIPE=3SV=1	tr|A0A553SJ36|A0A553SJ36_NIACI2,3-bisphosphoglycerate-independentphosphoglyceratemutaseOS=NialliacirculansOX=1397GN=gpmIPE=3SV=1	tr|A0A553SJ36|A0A553SJ36_NIACI2,3-bisphosphoglycerate-independentphosphoglyceratemutaseOS=NialliacirculansOX=1397GN=gpmIPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	456.77288818359375	2	456.773668	911.532783	-1.4978	-0.00068416	-1.3282	-0.00060667	-2.826	-0.0012908	456.77287635868555	138.2	0.73259	137.14	136.85	137.59	-1.0595					26	14	3	0	0	0	0.59983	1	11293	11293		31.955	6.5047	1	25128			60246	33460	49697	49743	66033	66033					0.07347839700048553
VIVTVPGVE	9	Unmodified	_VIVTVPGVE_					0	0	0		tr|A0A553SJ36|A0A553SJ36_NIACI2,3-bisphosphoglycerate-independentphosphoglyceratemutaseOS=NialliacirculansOX=1397GN=gpmIPE=3SV=1	tr|A0A553SJ36|A0A553SJ36_NIACI2,3-bisphosphoglycerate-independentphosphoglyceratemutaseOS=NialliacirculansOX=1397GN=gpmIPE=3SV=1	tr|A0A553SJ36|A0A553SJ36_NIACI2,3-bisphosphoglycerate-independentphosphoglyceratemutaseOS=NialliacirculansOX=1397GN=gpmIPE=3SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	456.773668	911.532783	1.7609	0.00080431	-4.5442	-0.0020757	-2.7834	-0.0012714	456.771431034772	138.57	1.0127	137.04	136.79	137.8	-1.5284	-0.048891	-0.0012231	NaN	31.955	33	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54510			60247	33460	49697	49743							0.07347839700048553
VIVVSGIVSL	10	Unmodified	_VIVVSGIVSL_					0	0	0			REV__ENSG00000016602|ENST00000370563|CLCA4	REV__ENSG00000016602|ENST00000370563|CLCA4	MULTI-MSMS	OvCa9_classI_Rep2	2	493.31805419921875	2	493.318243	984.621933	-0.29859	-0.0001473	-0.49169	-0.00024256	-0.79028	-0.00038986	493.31794941561196	103.58	2.8206	103	102.39	105.21	-0.57639					183	56	5	0	0	0	0.050494	2	9573	9573;9591		128.86	2.6185	1	4529700	+		60248	16525	49698	49744	66034;66035	66034					0.12900674659567812
VIVVSGIVSL	10	Unmodified	_VIVVSGIVSL_					0	0	0			REV__ENSG00000016602|ENST00000370563|CLCA4	REV__ENSG00000016602|ENST00000370563|CLCA4	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.31787109375	2	493.318243	984.621933	-0.045161	-2.2279E-05	-0.87216	-0.00043025	-0.91732	-0.00045253	493.3177637339079	105.04	2.7633	103.03	102.64	105.4	-2.0161					193	53	7	0	0	0	0.015906	2	9530	9530;9566		152.63	9.2598	1	5257600	+		60249	16525	49698	49744	66036;66037	66036					0.12900674659567812
VIWHYPES	8	Unmodified	_VIWHYPES_					0	0	0		ENST00000554132.1_1_14:76099973-76129466:+|nuORF	ENST00000554132.1_1_14:76099973-76129466:+|nuORF	ENST00000554132.1_1_14:76099973-76129466:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	515.7510986328125	2	515.753267	1029.49198	0.78461	0.00040466	-4.0184	-0.0020725	-3.2338	-0.0016678	515.7511516443681	131.35	1.919	131.12	130.7	132.62	-0.22696					91	38	4	0	0	0	0.63104	2	12927	12927;12951		57.453	14.588	1	572010			60250	13632	49699	49745	66038;66039	66038					-0.02158501619578601
VIWHYPES	8	Unmodified	_VIWHYPES_					0	0	0		ENST00000554132.1_1_14:76099973-76129466:+|nuORF	ENST00000554132.1_1_14:76099973-76129466:+|nuORF	ENST00000554132.1_1_14:76099973-76129466:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	515.7515869140625	2	515.753267	1029.49198	0.44781	0.00023096	-3.4906	-0.0018003	-3.0428	-0.0015693	515.7513503783326	132.24	1.5304	131.12	130.79	132.32	-1.1249					72	30	3	0	0	0	0.59103	5	10574	10557;10562;10568;10574;10580		65.897	19.131	1	308860			60251	13632	49699	49745	66040;66041;66042;66043;66044	66043					-0.02158501619578601
VIWVFHFTF	9	Unmodified	_VIWVFHFTF_					0	0	0		tr|A0A553SHP7|A0A553SHP7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_13380PE=4SV=1	tr|A0A553SHP7|A0A553SHP7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_13380PE=4SV=1	tr|A0A553SHP7|A0A553SHP7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_13380PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	599.3016967773438	2	598.318577	1194.6226	-0.98768	-0.00059095	-2.8993	-0.0017347	-3.8869	-0.0023256	598.3164772289305	115.32	1.5815	115.2	114.6	116.18	-0.11777					44	31	2	0	0	0	0.027462	1	10969	10969		26.796	0	1	27038			60252	33296	49700	49746	66045	66045					0.03307514099265063
VIWYDKGII	9	Unmodified	_VIWYDKGII_					0	0	0		tr|A0A7D6ZQQ9|A0A7D6ZQQ9_9CLOTDUF4367domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01380PE=4SV=1	tr|A0A7D6ZQQ9|A0A7D6ZQQ9_9CLOTDUF4367domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01380PE=4SV=1	tr|A0A7D6ZQQ9|A0A7D6ZQQ9_9CLOTDUF4367domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01380PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	553.8388671875	2	553.815867	1105.61718	-0.090839	-5.0308E-05	-3.4303	-0.0018998	-3.5212	-0.0019501	553.8147568210247	104.46	0.62166	103.02	102.76	103.38	-1.4347					19	11	2	0	0	0	0.027456	1	7279	7279		38.806	12.113	1	49046			60253	35705	49701	49747	66046	66046					0.06859790516796238
VIYADGYMFV	10	Unmodified	_VIYADGYMFV_					0	0	0		nc|ENSG00000130270|O60423-3|ATP8B3	nc|ENSG00000130270|O60423-3|ATP8B3	nc|ENSG00000130270|O60423-3|ATP8B3	MULTI-MSMS	OvCa99_classI_Rep5	1	589.2803955078125	2	589.283543	1176.55253	1.78	0.0010489	-2.6921	-0.0015864	-0.91212	-0.0005375	589.28169171831	117.26	0.55706	117.26	116.95	117.51	0					26	11	3	0	0	0	0.58282	1	13438	13438		44.117	1.7207	1	202620			60254	15011	49702	49748	66047	66047					-0.028681523515160734
VIYDDAGLGL	10	Unmodified	_VIYDDAGLGL_					0	0	0			REV__tr|A0A7D6VPL8|A0A7D6VPL8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_23525PE=4SV=1	REV__tr|A0A7D6VPL8|A0A7D6VPL8_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_23525PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.797607421875	2	518.27149	1034.52843	1.0457	0.00054197	2.2546	0.0011685	3.3003	0.0017105	518.2727364050833	110.66	0.42034	109.51	109.29	109.71	-1.1444					10	7	2	0	0	0	0.027056	1	8020	8020		27.882	11.177	1	8281.8	+		60255	31261	49703	49749	66048	66048					0.012543304864720994
VIYLVALAII	10	Unmodified	_VIYLVALAII_					0	0	0			REV__tr|A0A553SR99|A0A553SR99_NIACISigmafactorregulatorC-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00600PE=4SV=1	REV__tr|A0A553SR99|A0A553SR99_NIACISigmafactorregulatorC-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00600PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	544.864013671875	2	544.359911	1086.70527	0.80347	0.00043738	1.1955	0.00065078	1.999	0.0010882	544.3604048753967	157.41	4.9209	157.41	156.9	161.82	0					252	99	4	0	0	0	0.5794	1	18672	18672		44.531	2.1349	1	913740	+		60256	30709	49704	49750	66049	66049					0.1653841110742178
VIYPARISL	9	Unmodified	_VIYPARISL_					0	0	0		DNAJB1-MED26|1|fusion;nc|ENSG00000132002|P25685-2|DNAJB1;DNAJB1|p.D287Rfs*31|1|0.04|ENSG00000132002|chr19:14516105-14516106|-/C|frameshift_variant;ENSG00000132002|ENST00000254322|DNAJB1	DNAJB1-MED26|1|fusion	DNAJB1-MED26|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	516.317138671875	2	516.316035	1030.61752	2.691	0.0013894	-0.65228	-0.00033678	2.0387	0.0010526	516.3155984833777	102.36	0.93449	102.36	102.08	103.01	0					70	21	5	0	0	0	0.14855	1	11395	11395		85.161	26.379	1	12684000			60257	751	49705	49751	66050	66050					0.10343210236646883
VIYPYVYEK	9	Unmodified	_VIYPYVYEK_					0	0	0		ENSG00000127954|ENST00000380079|STEAP4	ENSG00000127954|ENST00000380079|STEAP4	ENSG00000127954|ENST00000380079|STEAP4	MULTI-MSMS	OvCa9_classI_Rep4_	4	587.314697265625	2	587.313158	1172.61176	-1.7382	-0.0010209	1.8109	0.0010636	0.072695	4.2695E-05	587.3141162245051	88.66	1.1933	86.057	85.679	86.873	-2.6027					60	22	4	0	0	0	0.42676	1	7575	7575		49.442	8.6634	1	446980			60258	3856	49706	49752	66051	66051					0.03236066934300652
VIYQWGFDK	9	Unmodified	_VIYQWGFDK_					0	0	0			REV__tr|A0A553SFE0|A0A553SFE0_NIACIAlpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_08580PE=3SV=1	REV__tr|A0A553SFE0|A0A553SFE0_NIACIAlpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_08580PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.2887573242188	2	578.295299	1154.57605	-7.0214	-0.0040605	-2.7674	-0.0016004	-9.7888	-0.0056608	578.2935937226971	160.38	4.1596	158.77	158.05	162.21	-1.6101					391	105	5	0	0	0	0.67509	1	15786	15786		23.042	1.0826	1	1912500	+		60259	29567	49707	49753	66052	66052					0.004940294773405185
VIYRGEDI	8	Unmodified	_VIYRGEDI_					0	0	0		tr|A0A553STL9|A0A553STL9_NIACINickelimportsystemATP-bindingproteinNikEOS=NialliacirculansOX=1397GN=CEQ21_05380PE=3SV=1	tr|A0A553STL9|A0A553STL9_NIACINickelimportsystemATP-bindingproteinNikEOS=NialliacirculansOX=1397GN=CEQ21_05380PE=3SV=1	tr|A0A553STL9|A0A553STL9_NIACINickelimportsystemATP-bindingproteinNikEOS=NialliacirculansOX=1397GN=CEQ21_05380PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	482.2855529785156	2	482.758549	963.502546	-0.57973	-0.00027987	0.64969	0.00031364	0.069954	3.3771E-05	482.75899290964765	89.869	0.6167	87.788	87.388	88.004	-2.0805					18	11	2	0	0	0	0.028476	1	5528	5528		40.573	13.88	1	16090			60260	34504	49708	49754	66053	66053					0.019334810348709652
VKADAIGLVS	10	Unmodified	_VKADAIGLVS_					0	0	0		tr|A0A553SPE4|A0A553SPE4_NIACIPhoHfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_26130PE=4SV=1	tr|A0A553SPE4|A0A553SPE4_NIACIPhoHfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_26130PE=4SV=1	tr|A0A553SPE4|A0A553SPE4_NIACIPhoHfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_26130PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.7354736328125	2	486.78985	971.565146	3.6801	0.0017915	0.26471	0.00012886	3.9449	0.0019203	486.78949054337613	88.203	0.59017	88.203	88.087	88.677	0					18	13	2	0	0	0	0.026688	1	9434	9434		25.574	11.437	1	624540			60261	34034	49709	49755	66054	66054					0.078226271030303
VKAEVQKVKD	10	Unmodified	_VKAEVQKVKD_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5;DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	572.2537841796875	2	572.340238	1142.66592	0.0051014	2.9197E-06	-0.15775	-9.0289E-05	-0.15265	-8.737E-05	572.3400323292811	83.749	0.71684	81.087	80.877	81.594	-2.6629					28	14	3	0	0	0	0.026931	1	6952	6952		23.523	6.1577	1	58805			60262	1103	49710	49756	66055	66055					0.10029659085898857
VKAEVQKVKD	10	Unmodified	_VKAEVQKVKD_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5;DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	572.340238	1142.66592	-0.46464	-0.00026593	0.084548	4.839E-05	-0.38009	-0.00021754	572.340355014534	82.652	0.61336	81.053	80.802	81.415	-1.5988	-0.082461	-0.00031719	NaN	23.523	22	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60771			60263	1103	49710	49756							0.10029659085898857
VKAEVQKVKD	10	Unmodified	_VKAEVQKVKD_					0	0	0		ENSG00000039139|ENST00000265104|DNAH5;DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant	ENSG00000039139|ENST00000265104|DNAH5	ENSG00000039139|ENST00000265104|DNAH5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	572.340238	1142.66592	-1.4684	-0.00084043	0.91702	0.00052485	-0.55138	-0.00031558	572.3405896423475	83.527	0.81836	81.266	81.017	81.836	-2.261	0.13116	0.00063573	NaN	23.523	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82149			60264	1103	49710	49756							0.10029659085898857
VKAEWLAAIV	10	Unmodified	_VKAEWLAAIV_					0	0	0			REV__AluSz6_dup29664|chr11:57605301-57605529:-|1.5743849053106609|0.3820210182941402|2.04|429.0|6|3|sense	REV__AluSz6_dup29664|chr11:57605301-57605529:-|1.5743849053106609|0.3820210182941402|2.04|429.0|6|3|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	550.3259887695312	2	550.329142	1098.64373	-0.8792	-0.00048385	-4.099	-0.0022558	-4.9782	-0.0027397	550.3268942315257	85.56	1.6104	84.069	83.505	85.115	-1.4907					109	31	5	0	0	0	0.44431	1	7401	7401		62.107	2.1766	1	1857300	+		60265	15620	49711	49757	66056	66056					0.09835479408116043
VKAFGFDTLK	10	Unmodified	_VKAFGFDTLK_					0	0	0			REV__ENSG00000162526|ENST00000373534|TSSK3	REV__ENSG00000162526|ENST00000373534|TSSK3	MULTI-MSMS	OvCa9_classI_Rep2	2	563.3194580078125	2	563.318774	1124.623	-3.8795	-0.0021854	3.8788	0.002185	-0.00068761	-3.8734E-07	563.3208339373161	155.36	0.8447	155.13	154.8	155.64	-0.22697					43	26	2	0	0	0	0.72142	1	15841	15841		28.081	1.3886	1	63890	+		60266	20743	49712	49758	66057	66057					0.06566889028476908
VKAFMKLRSSP	11	Unmodified	_VKAFMKLRSSP_					0	0	0			REV__ENST00000464432.5_1_2:131100487-131103076:+|nuORF	REV__ENST00000464432.5_1_2:131100487-131103076:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	632.36376953125	2	632.365733	1262.71691	-6.31	-0.0039902	-0.39664	-0.00025082	-6.7066	-0.004241	632.3652537766649	163.68	0.89803	162.05	161.68	162.57	-1.6336					70	24	4	0	0	0	0.68757	1	16182	16182		33.922	1.1092	1	384570	+		60267	26150	49713	49759	66058	66058					0.09606284859091829
VKAGDKVAVFG	11	Unmodified	_VKAGDKVAVFG_					0	0	0		tr|A0A553SS88|A0A553SS88_NIACI2,3-butanedioldehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_02645PE=3SV=1	tr|A0A553SS88|A0A553SS88_NIACI2,3-butanedioldehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_02645PE=3SV=1	tr|A0A553SS88|A0A553SS88_NIACI2,3-butanedioldehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_02645PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	545.8165283203125	2	545.816399	1089.61824	-1.197	-0.00065337	0.89777	0.00049002	-0.29928	-0.00016335	545.8167800423154	120.61	1.2338	120.42	120.06	121.3	-0.19718					56	24	3	0	0	0	0.60323	1	11646	11646		44.377	6.5657	1	190390			60268	34345	49714	49760	66059	66059					0.07702004885709357
VKAGSKVL	8	Unmodified	_VKAGSKVL_					0	0	0			REV__tr|A0A553SQ28|A0A553SQ28_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_17075PE=3SV=1	REV__tr|A0A553SQ28|A0A553SQ28_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_17075PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	401.2620544433594	2	401.263271	800.511988	1.296	0.00052003	-4.2066	-0.001688	-2.9106	-0.0011679	401.26147123184654	136.26	1.7613	136.04	135.22	136.99	-0.22696					76	35	3	0	0	0	0.75915	1	13575	13575		20.482	1.1219	1	533840	+		60269	30600	49715	49761	66060	66060					0.10375294111042876
VKAGSKVL	8	Unmodified	_VKAGSKVL_					0	0	0			REV__tr|A0A553SQ28|A0A553SQ28_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_17075PE=3SV=1	REV__tr|A0A553SQ28|A0A553SQ28_NIACISDRfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_17075PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	401.26202392578125	2	401.263271	800.511988	-0.21441	-8.6037E-05	-2.9352	-0.0011778	-3.1496	-0.0012638	401.26203375308216	137.05	1.2653	135.96	135.51	136.78	-1.0858					61	25	3	0	0	0	0.75241	1	11175	11175		25.45	4.9683	1	224680	+		60270	30600	49715	49761	66061	66061					0.10375294111042876
VKAHGSLAHK	10	Unmodified	_VKAHGSLAHK_					0	0	0			REV__ENSG00000129167|ENST00000682019|TPH1	REV__ENSG00000129167|ENST00000682019|TPH1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2646484375	2	524.306532	1046.59851	1.4322	0.00075093	1.0686	0.00056025	2.5008	0.0013112	524.307981256856	135.96	0.70306	135.96	135.6	136.3	0					17	14	2	0	0	0	0.026826	1	15849	15849		29.17	10.846	1	58448	+		60271	18887	49716	49762	66062	66062					0.07707673665595394
VKAIYTKYLNK	11	Unmodified	_VKAIYTKYLNK_					0	0	0			REV__tr|A0A7D6ZJE9|A0A7D6ZJE9_9CLOTPseudouridinesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10885PE=3SV=1	REV__tr|A0A7D6ZJE9|A0A7D6ZJE9_9CLOTPseudouridinesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10885PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	448.25390625	3	447.602734	1339.78637	1.8283	0.00081835	3.1102	0.0013922	4.9385	0.0022105	447.6040378276873	74.675	1.2482	72.704	72.324	73.572	-1.9711					51	22	4	0	0	0	0.026364	1	6169	6169		13.508	0	1	128830	+		60272	32084	49717	49763	66063	66063					0.1300706707952486
VKAKKRKR	8	Unmodified	_VKAKKRKR_					0	0	0		nc|ENSG00000113649|O14776-2|TCERG1;nc|ENSG00000113649|O14776|TCERG1;ENSG00000113649|ENST00000679501|TCERG1	nc|ENSG00000113649|O14776-2|TCERG1	nc|ENSG00000113649|O14776-2|TCERG1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3353271484375	2	507.35636	1012.69817	0.94834	0.00048114	-2.2845	-0.0011591	-1.3362	-0.00067792	507.3555313947031	132.5	0.19189	132.5	132.41	132.6	0					5	3	2	0	0	0	0.028476	1	15398	15398		8.8223	0	1	11181			60273	2988	49718	49764	66064	66064					0.19232536070217066
VKAKLREV	8	Unmodified	_VKAKLREV_					0	0	0			REV__nc|ENSG00000178209|Q15149-7|PLEC	REV__nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	OvCa99_classI_Rep5	1	471.80963134765625	2	471.808377	941.6022	0.52211	0.00024634	-1.1764	-0.00055505	-0.65432	-0.00030871	471.80782218339226	63.476	2.0907	63.476	63.14	65.231	0					105	51	4	0	0	0	0.57734	1	5692	5692		68.787	2.3575	1	39476000	+		60274	22051	49719	49765	66065	66065					0.12906343439465218
VKAKLVELK	9	Unmodified	_VKAKLVELK_					0	0	0			REV__ENSG00000225528|ENST00000424496|TMA7B	REV__ENSG00000225528|ENST00000424496|TMA7B	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.3003540039062	2	514.347335	1026.68012	1.1639	0.00059867	0.57867	0.00029764	1.7426	0.00089631	514.3472560925472	80.922	0.33484	80.922	80.786	81.12	0					10	7	2	0	0	0	0.027462	1	8339	8339		29.15	7.1897	1	138760	+		60275	23363	49720	49766	66066	66066					0.16784356304833636
VKAKWVLLE	9	Unmodified	_VKAKWVLLE_					0	0	0		chr2:188994082-188995692|114|201.92|0.14|10.48|+|1|COL3A1,MIR3606|1	chr2:188994082-188995692|114|201.92|0.14|10.48|+|1|COL3A1,MIR3606|1	chr2:188994082-188995692|114|201.92|0.14|10.48|+|1|COL3A1,MIR3606|1	MULTI-MSMS	OvCa99_classI_Rep5	1	543.34130859375	2	543.33951	1084.66447	1.2159	0.00066066	0.83208	0.0004521	2.048	0.0011128	543.3398505063399	146.15	1.7738	146.15	145.78	147.55	0					91	35	4	0	0	0	0.29717	1	17164	17164		63.306	6.5852	1	1432900			60276	436	49721	49767	66067	66067					0.1255206978780734
VKAKYKKNYI	10	Unmodified	_VKAKYKKNYI_					0	0	0			REV__tr|A0A553STB1|A0A553STB1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04720PE=4SV=1	REV__tr|A0A553STB1|A0A553STB1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_04720PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	627.8890380859375	2	627.882073	1253.74959	1.5846	0.00099492	4.2409	0.0026628	5.8255	0.0036577	627.8845502144422	27.594	0.6021	24.885	24.742	25.344	-2.7097					21	13	3	0	0	0	0.85907	1	509	509		11.511	1.2458	1	23299	+		60277	30941	49722	49768	66068	66068					0.132868152536048
VKAQDKVLL	9	Unmodified	_VKAQDKVLL_					0	0	0			REV__ENSG00000254585|ENST00000650528|MAGEL2	REV__ENSG00000254585|ENST00000650528|MAGEL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.7627258300781	2	507.321317	1012.62808	0.092526	4.694E-05	0.069086	3.5049E-05	0.16161	8.1989E-05	507.32134670041205	122.77	0.64524	121.4	121.21	121.85	-1.3666					17	12	2	0	0	0	0.027426	1	11632	11632		31.53	0	1	19734	+		60278	23518	49723	49769	66069	66069					0.12227192891100458
VKAQTASLFY	10	Unmodified	_VKAQTASLFY_					0	0	0		ENST00000506793.5_1_4:44680541-44700695:+|nuORF;ENSG00000151806|ENST00000281543|GUF1	ENST00000506793.5_1_4:44680541-44700695:+|nuORF	ENST00000506793.5_1_4:44680541-44700695:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	564.30859375	2	564.308406	1126.60226	-0.64094	-0.00036169	0.38666	0.0002182	-0.25427	-0.00014349	564.3086346308005	121.22	1.0377	121.03	120.61	121.64	-0.19718					60	20	5	0	0	0	0.50999	1	11736	11736		52.937	10.072	1	328140			60279	5585	49724	49770	66070	66070					0.04402298648778924
VKAQTASLFY	10	Unmodified	_VKAQTASLFY_					0	0	0		ENST00000506793.5_1_4:44680541-44700695:+|nuORF;ENSG00000151806|ENST00000281543|GUF1	ENST00000506793.5_1_4:44680541-44700695:+|nuORF	ENST00000506793.5_1_4:44680541-44700695:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.3078002929688	2	564.308406	1126.60226	1.4941	0.00084313	-1.7569	-0.00099143	-0.26281	-0.00014831	564.3073525636003	122.58	1.342	121.21	120.76	122.1	-1.3666					64	26	5	0	0	0	0.50999	3	11568	11559;11568;11580		52.937	12.364	1	439730			60280	5585	49724	49770	66071;66072;66073	66072					0.04402298648778924
VKARIGYHN	9	Unmodified	_VKARIGYHN_					0	0	0			REV__ENSG00000071991|ENST00000262150|CDH19	REV__ENSG00000071991|ENST00000262150|CDH19	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.3008422851562	2	529.298707	1056.58286	0.016215	8.5826E-06	-1.7394	-0.00092064	-1.7231	-0.00091206	529.2976255669407	140.62	1.5493	139.13	138.65	140.2	-1.4952					64	29	3	0	0	0	0.55588	1	13790	13790		37.159	0	1	125420	+		60281	16907	49725	49771	66074	66074					0.05683387148565089
VKARLGMLT	9	Unmodified	_VKARLGMLT_					0	0	0		ENST00000555173.1_1_12:57629348-57630441:-|nuORF	ENST00000555173.1_1_12:57629348-57630441:-|nuORF	ENST00000555173.1_1_12:57629348-57630441:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.2710266113281	2	494.802237	987.589921	-0.84845	-0.00041982	-3.1516	-0.0015594	-4.0001	-0.0019792	494.80030983076455	50.547	0.83162	50.547	49.988	50.819	0					32	18	3	0	0	0	0.027462	1	3800	3800		21.96	0	1	239590			60282	13641	49726	49772	66075	66075					0.09562983704768158
VKARLGMLT	9	Unmodified	_VKARLGMLT_					0	0	0		ENST00000555173.1_1_12:57629348-57630441:-|nuORF	ENST00000555173.1_1_12:57629348-57630441:-|nuORF	ENST00000555173.1_1_12:57629348-57630441:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	494.802237	987.589921	-0.86946	-0.00043021	-10.125	-0.0050101	-10.995	-0.0054403	494.7971113294872	53.01	0.69085	50.196	49.838	50.529	-2.8139	-0.10943	-0.0012492	NaN	15.642	33	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66256			60283	13641	49726	49772							0.09562983704768158
VKARLGMLT	9	Unmodified	_VKARLGMLT_					0	0	0		ENST00000555173.1_1_12:57629348-57630441:-|nuORF	ENST00000555173.1_1_12:57629348-57630441:-|nuORF	ENST00000555173.1_1_12:57629348-57630441:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	494.802237	987.589921	-0.75111	-0.00037165	-10.701	-0.0052949	-11.452	-0.0056666	494.7969373305552	53.382	0.91816	50.174	49.844	50.762	-3.208	-0.13166	-0.0018189	NaN	15.642	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	196300			60284	13641	49726	49772							0.09562983704768158
VKARWRQQP	9	Unmodified	_VKARWRQQP_					0	0	0			REV__ENSG00000111341|ENST00000539261|MGP	REV__ENSG00000111341|ENST00000539261|MGP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	585.3543701171875	2	584.838531	1167.66251	-0.44545	-0.00026052	-0.78009	-0.00045622	-1.2255	-0.00071674	584.8380976145796	64.344	0.68272	60.869	60.539	61.222	-3.475					17	13	2	0	0	0	0.027462	1	4557	4557		21.96	0	1	31468	+		60285	18029	49727	49773	66076	66076					0.08538453822552583
VKARWRQQP	9	Unmodified	_VKARWRQQP_					0	0	0			REV__ENSG00000111341|ENST00000539261|MGP	REV__ENSG00000111341|ENST00000539261|MGP	MULTI-MATCH	OvCa9_classI_Rep2	2		2	584.838531	1167.66251	-1.5363	-0.00089851	-0.85535	-0.00050024	-2.3917	-0.0013988	584.8379364275327	63.474	0.628	60.73	60.48	61.108	-2.7444	-0.069369	-4.7002E-05	NaN	21.96	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20171	+		60286	18029	49727	49773							0.08538453822552583
VKASLLPGG	9	Unmodified	_VKASLLPGG_					0	0	0		ENSG00000148400|ENST00000651671|NOTCH1;ENST00000494783.1_1_9:139397150-139399267:-|nuORF	ENSG00000148400|ENST00000651671|NOTCH1	ENSG00000148400|ENST00000651671|NOTCH1	MULTI-MSMS	OvCa9_classI_Rep2	2	421.2590026855469	2	421.260728	840.506903	0.30073	0.00012669	-3.3692	-0.0014193	-3.0685	-0.0012926	421.25922240366054	134.3	0.7355	134.07	133.56	134.29	-0.22696					27	14	2	0	0	0	0.6653	1	13301	13301		24.203	1.1603	1	153990			60287	5409	49728	49774	66077	66077					0.08026990248447419
VKASTKLV	8	Unmodified	_VKASTKLV_					0	0	0			REV__tr|A0A553SPJ4|A0A553SPJ4_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26530PE=4SV=1	REV__tr|A0A553SPJ4|A0A553SPJ4_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26530PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	423.27508544921875	2	423.276378	844.538203	0.49298	0.00020867	-3.7053	-0.0015684	-3.2124	-0.0013597	423.27473332954634	141.2	1.9317	139.74	139.4	141.33	-1.4627					94	36	4	0	0	0	0.75208	1	13867	13867		17.365	1.7232	1	1644700	+		60288	30542	49729	49775	66078	66078					0.10971563282510033
VKATEKALP	9	Unmodified	_VKATEKALP_					0	0	0		nc|ENSG00000151726|P33121-3|ACSL1	nc|ENSG00000151726|P33121-3|ACSL1	nc|ENSG00000151726|P33121-3|ACSL1	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.7781066894531	2	478.792392	955.570232	-0.36966	-0.00017699	-0.41249	-0.0001975	-0.78215	-0.00037449	478.7919492722263	73.375	1.0973	70.975	70.325	71.422	-2.3999					47	20	3	0	0	0	0.027295	1	6006	6006		64.207	0	1	114860			60289	15095	49730	49776	66079	66079					0.09066930965661868
VKAWNVDEL	9	Unmodified	_VKAWNVDEL_					0	0	0		nc|ENSG00000277149|Q6NUM6-2|TYW1B;ENSG00000277149|ENST00000620995|TYW1B;ENSG00000198874|ENST00000359626|TYW1	nc|ENSG00000277149|Q6NUM6-2|TYW1B	nc|ENSG00000277149|Q6NUM6-2|TYW1B	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.3087768554688	2	537.284931	1072.55531	-1.4111	-0.00075816	1.7241	0.00092632	0.31298	0.00016816	537.2856505768405	76.422	1.9867	74.568	73.938	75.925	-1.854					71	37	3	0	0	0	0.027448	1	6340	6340		44.117	19.914	1	255420			60290	8895	49731	49777	66080	66080					0.021934390976412033
VKCFEGEGGH	10	Unmodified	_VKCFEGEGGH_					0	0	0		ZBTB40|p.Q1047Sfs*26|1|0.06|ENSG00000184677|chr1:22521585-22521585|C/-|frameshift_variant;ENSG00000184677|ENST00000375647|ZBTB40	ZBTB40|p.Q1047Sfs*26|1|0.06|ENSG00000184677|chr1:22521585-22521585|C/-|frameshift_variant	ZBTB40|p.Q1047Sfs*26|1|0.06|ENSG00000184677|chr1:22521585-22521585|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	531.7371826171875	2	531.737291	1061.46003	0.42225	0.00022453	0.061412	3.2655E-05	0.48366	0.00025718	531.7372552159616	131.11	1.6243	129.98	129.46	131.09	-1.1249					58	32	2	0	0	0	0.66721	1	10428	10428		34.173	8.7224	1	92622			60291	8182	49732	49778	66081	66081					-0.06824237365003682
VKDADSGDKKP	11	Unmodified	_VKDADSGDKKP_					0	0	0		ENSG00000139354|ENST00000547754|GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	ENSG00000139354|ENST00000547754|GAS2L3	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.7803955078125	2	580.30131	1158.58807	-1.3172	-0.00076436	-1.3609	-0.00078973	-2.6781	-0.0015541	580.3004715006794	70.225	0.84699	70.225	69.756	70.603	0					45	20	3	0	0	0	0.025297	1	6746	6746		43.651	0	1	1219900			60292	4769	49733	49779	66082	66082					0.015116014298428126
VKDEKETKP	9	Unmodified	_VKDEKETKP_					0	0	0			REV__ENSG00000168310|ENST00000393593|IRF2	REV__ENSG00000168310|ENST00000393593|IRF2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.3444213867188	2	537.295496	1072.57644	-1.8793	-0.0010097	-0.46038	-0.00024736	-2.3397	-0.0012571	537.2959020390709	45.243	0.83368	42.204	41.971	42.805	-3.0385					28	15	3	0	0	0	0.027462	1	2312	2312		47.657	12.039	1	37929	+		60293	21362	49734	49780	66083	66083					0.04305404406522939
VKDEVKPL	8	Unmodified	_VKDEVKPL_					0	0	0			REV__ENST00000468790.1_1_10:115479033-115479252:+|nuORF	REV__ENST00000468790.1_1_10:115479033-115479252:+|nuORF	MSMS	OvCa99_classI_Rep5	1	464.28021240234375	2	464.279118	926.543683	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.016	1	72.016	71.516	72.516	0								0	0	0	0.30129	1	6992	6992		64.207	0.901	1		+		60294	26235	49735	49781	66084	66084					0.07747242074333371
VKDFGLAKL	9	Unmodified	_VKDFGLAKL_					0	0	0			REV__tr|A0A7D6VR49|A0A7D6VR49_9CLOTIronhydrogenasesmallsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_01045PE=4SV=1	REV__tr|A0A7D6VR49|A0A7D6VR49_9CLOTIronhydrogenasesmallsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_01045PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.3241271972656	2	495.80276	989.590967	-0.61799	-0.0003064	-0.72731	-0.0003606	-1.3453	-0.00066701	495.80187303065	106.11	1.1233	104.1	103.65	104.77	-2.0161					31	21	2	0	0	0	0.027462	1	9657	9657		35.618	3.6634	1	21570	+		60295	31385	49736	49782	66085	66085					0.09575521345323068
VKDILKNVI	9	Unmodified	_VKDILKNVI_					0	0	0		tr|A0A7D6VXS9|A0A7D6VXS9_9CLOTAminoglycosidephosphotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13955PE=4SV=1	tr|A0A7D6VXS9|A0A7D6VXS9_9CLOTAminoglycosidephosphotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13955PE=4SV=1	tr|A0A7D6VXS9|A0A7D6VXS9_9CLOTAminoglycosidephosphotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13955PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.2472534179688	2	521.336967	1040.65938	-1.7498	-0.00091226	1.5764	0.00082183	-0.17345	-9.0428E-05	521.337527547336	70.091	0.44547	70.091	69.84	70.286	0					21	10	3	0	0	0	0.027462	1	6673	6673		26.693	7.5894	1	493870			60296	35301	49737	49783	66086	66086					0.14067765925165077
VKDIRWLV	8	Unmodified	_VKDIRWLV_					0	0	0		ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-2|PSME4;nc|ENSG00000068878|Q14997-3|PSME4;nc|ENSG00000068878|Q14997-4|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	OvCa9_classI_Rep2	2	514.817138671875	2	514.816202	1027.61785	-0.99197	-0.00051068	0.66613	0.00034293	-0.32584	-0.00016775	514.8162066002304	117.21	0.74255	117.08	116.86	117.61	-0.12868					29	14	3	0	0	0	0.6962	1	11233	11233		44.117	6.9577	1	119960			60297	1399	49738	49784	66087	66087					0.10514629956492172
VKDKKEDKK	9	Unmodified	_VKDKKEDKK_					0	0	0			REV__nc|ENSG00000137033|O95760-3|IL33	REV__nc|ENSG00000137033|O95760-3|IL33	MULTI-MSMS	OvCa9_classI_Rep2	2	559.3338623046875	2	559.332413	1116.65027	0.022736	1.2717E-05	1.9367	0.0010832	1.9594	0.001096	559.3338875168262	104.92	4.6529	104.34	102.39	107.04	-0.57639					237	93	5	0	0	0	0.37135	1	9799	9799		54.776	5.2403	1	7580000	+		60298	19428	49739	49785	66088	66088					0.09661372568848492
VKDKKEDKK	9	Unmodified	_VKDKKEDKK_					0	0	0			REV__nc|ENSG00000137033|O95760-3|IL33	REV__nc|ENSG00000137033|O95760-3|IL33	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.3356323242188	2	559.332413	1116.65027	0.1153	6.449E-05	2.4074	0.0013466	2.5227	0.001411	559.3338934185311	106.4	2.878	104.38	103.6	106.47	-2.0161					138	56	4	0	0	0	0.2422	2	9692	9692;9740		69.628	3.108	1	9929600	+		60299	19428	49739	49785	66089;66090	66089					0.09661372568848492
VKDKLRAIVVT	11	Unmodified	_VKDKLRAIVVT_					0	0	0		nc|ENSG00000135424|Q13683-13|ITGA7;nc|ENSG00000135424|Q13683-9|ITGA7;ENSG00000135424|ENST00000257879|ITGA7;nc|ENSG00000135424|Q13683-3|ITGA7;nc|ENSG00000135424|Q13683-10|ITGA7;nc|ENSG00000135424|Q13683|ITGA7;ITGA7-MIP|1|fusion;ITGA7-MIP|3|fusion;ITGA7-MIP|2|fusion	nc|ENSG00000135424|Q13683-13|ITGA7	nc|ENSG00000135424|Q13683-13|ITGA7	MULTI-MSMS	OvCa9_classI_Rep2	2	621.3948974609375	2	621.40063	1240.78671	-5.5952	-0.0034769	-3.3593	-0.0020875	-8.9545	-0.0055644	621.3985001848658	162.79	0.23622	162.57	162.4	162.64	-0.22696					15	4	5	0	0	0	0.69099	1	16587	16587		32.751	1.2207	1	1093900			60300	4377	49740	49786	66091	66091					0.17594486799339393
VKDKVPSL	8	Unmodified	_VKDKVPSL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OvCa9_classI_Rep2	2	443.2724304199219	2	443.273835	884.533118	0.83529	0.00037026	-3.8589	-0.0017105	-3.0236	-0.0013403	443.27205335230417	138.39	1.523	138.16	137.68	139.21	-0.22696					79	30	3	0	0	0	0.75426	1	13782	13782		18.324	0.95945	1	138730			60301	1212	49741	49787	66092	66092					0.08623259419891838
VKDKVPSL	8	Unmodified	_VKDKVPSL_					0	0	0		ENSG00000054654|ENST00000555002|SYNE2;nc|ENSG00000054654|Q8WXH0|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	ENSG00000054654|ENST00000555002|SYNE2	MULTI-MSMS	OvCa9_classI_Rep4_	4	443.27386474609375	2	443.273835	884.533118	1.1525	0.00051086	-4.3689	-0.0019366	-3.2165	-0.0014258	443.27180064343105	139.52	2.0991	138.02	137.22	139.32	-1.4952					91	40	3	0	0	0	0.75241	1	13632	13632		25.45	1.2474	1	858700			60302	1212	49741	49787	66093	66093					0.08623259419891838
VKDPGISFM	9	Unmodified	_VKDPGISFM_					0	0	0			REV__nc|ENSG00000172752|A8TX70|COL6A5	REV__nc|ENSG00000172752|A8TX70|COL6A5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.7989196777344	2	497.257328	992.500103	-0.92499	-0.00045996	-3.0638	-0.0015235	-3.9888	-0.0019835	497.25569943814924	55.647	1.068	52.352	51.751	52.819	-3.2944					33	20	2	0	0	0	0.027448	1	3485	3485		44.117	13.613	1	52334	+		60303	21722	49742	49788	66094	66094					0.0035530930555296436
VKDVEDKPE	9	Unmodified	_VKDVEDKPE_					0	0	0		ENSG00000154429|ENST00000284617|CCSAP;nc|ENSG00000154429|Q6IQ19-2|CCSAP;ENST00000483092.1_1_1:229460984-229462796:-|nuORF	ENSG00000154429|ENST00000284617|CCSAP	ENSG00000154429|ENST00000284617|CCSAP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.7899780273438	2	529.771854	1057.52915	-1.1059	-0.0005859	1.7112	0.00090655	0.60526	0.00032065	529.7724557704587	77.492	0.57863	74.676	74.44	75.018	-2.8165					15	11	2	0	0	0	0.027462	1	6173	6173		22.58	0	1	40092			60304	5735	49743	49789	66095	66095					0.002691251355145141
VKDVEDKPE	9	Unmodified	_VKDVEDKPE_					0	0	0		ENSG00000154429|ENST00000284617|CCSAP;nc|ENSG00000154429|Q6IQ19-2|CCSAP;ENST00000483092.1_1_1:229460984-229462796:-|nuORF	ENSG00000154429|ENST00000284617|CCSAP	ENSG00000154429|ENST00000284617|CCSAP	MULTI-MATCH	OvCa99_classI_Rep5	1		2	529.771854	1057.52915	0.73299	0.00038832	5.9042	0.0031279	6.6372	0.0035162	529.7750732135604	74.495	0.47546	74.495	74.286	74.761	0	-0.090172	0.00075722	NaN	10.587	19	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	395900			60305	5735	49743	49789							0.002691251355145141
VKDVSVPV	8	Unmodified	_VKDVSVPV_					0	0	0		ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1;ENST00000527224.1_1_11:65837957-65984297:+|nuORF	ENSG00000175115|ENST00000320580|PACS1	ENSG00000175115|ENST00000320580|PACS1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	421.7757568359375	2	421.752736	841.490919	0.42684	0.00018002	-0.1783	-7.5198E-05	0.24854	0.00010482	421.7526101827495	84.338	1.3774	81.675	81.167	82.544	-2.6629					59	28	3	0	0	0	0.028476	1	7053	7053		62.107	0	1	252850			60306	7518	49744	49790	66096	66096					0.06383284011531032
VKDYIKDRVTI	11	Unmodified	_VKDYIKDRVTI_					0	0	0			REV__nc|ENSG00000164649|Q96GN5-5|CDCA7L	REV__nc|ENSG00000164649|Q96GN5-5|CDCA7L	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.59918212890625	3	450.59776	1348.77145	0.73789	0.00033249	-0.63207	-0.00028481	0.10582	4.7682E-05	450.5974910542259	75.612	2.2066	72.673	72.255	74.462	-2.9389					135	45	5	0	0	0	0.66539	1	5968	5968		38.714	1.1142	1	959650	+		60307	21007	49745	49791	66097	66097					0.11101575211500858
VKEADWIL	8	Unmodified	_VKEADWIL_					0	0	0		ENST00000533200.5_1_11:43904193-43919192:+|nuORF;nc|ENSG00000166199|Q96Q83-2|ALKBH3;ENSG00000166199|ENST00000302708|ALKBH3;ENST00000532410.1_1_11:43905559-43940676:+|nuORF	ENST00000533200.5_1_11:43904193-43919192:+|nuORF	ENST00000533200.5_1_11:43904193-43919192:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.7798156738281	2	487.271293	972.528032	-1.4591	-0.00071097	-1.9218	-0.00093645	-3.3809	-0.0016474	487.2697028314486	43.867	0.60865	43.867	43.651	44.26	0					18	13	3	0	0	0	0.028476	1	2957	2957		33.516	0	1	442580			60308	6651	49746	49792	66098	66098					0.04066955557277652
VKEDAFYSK	9	Unmodified	_VKEDAFYSK_					0	0	0		ENST00000405676.2_1_6:25140296-25141628:+|nuORF	ENST00000405676.2_1_6:25140296-25141628:+|nuORF	ENST00000405676.2_1_6:25140296-25141628:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	543.794189453125	2	543.776939	1085.53933	-0.41704	-0.00022677	-1.359	-0.00073901	-1.7761	-0.00096578	544.2762730015263	106.91	0.14867	106.6	106.47	106.62	-0.30836					4	2	2	0	0	0	0.027461	1	9969	9969		32.812	0	1	9529.6			60309	11468	49747	49793	66099	66099					-2.2671392343909247E-05
VKEDIVTIN	9	Unmodified	_VKEDIVTIN_					0	0	0		tr|A0A7D6VNV6|A0A7D6VNV6_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20500PE=4SV=1	tr|A0A7D6VNV6|A0A7D6VNV6_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20500PE=4SV=1	tr|A0A7D6VNV6|A0A7D6VNV6_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20500PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7913818359375	2	515.792589	1029.57063	-0.27379	-0.00014122	0.021588	1.1135E-05	-0.2522	-0.00013008	515.7924868825856	121.83	1.5653	120.48	120.21	121.77	-1.3479					77	30	4	0	0	0	0.34132	1	11499	11499		58.23	8.6939	1	178230			60310	34732	49748	49794	66100	66100					0.05702305894874371
VKEDPLAADG	10	Unmodified	_VKEDPLAADG_					0	0	0		nc|ENSG00000157613|Q96BA8-2|CREB3L1;ENSG00000157613|ENST00000621158|CREB3L1	nc|ENSG00000157613|Q96BA8-2|CREB3L1	nc|ENSG00000157613|Q96BA8-2|CREB3L1	MULTI-MSMS	OvCa99_classI_Rep5	1	507.7589416503906	2	507.758746	1013.50294	0.85468	0.00043397	1.1647	0.0005914	2.0194	0.0010254	507.75921835508785	158.03	1.2386	158.03	157.7	158.94	0					46	25	2	0	0	0	0.64697	1	18543	18543		36.447	0.82846	1	92663			60311	5905	49749	49795	66101	66101					-0.003271440359526423
VKEDRKEN	8	Unmodified	_VKEDRKEN_					0	0	0			REV__tr|A0A7D7A171|A0A7D7A171_9CLOTMannitol-1-phosphate5-dehydrogenaseOS=ClostridiumintestinaleOX=36845GN=mtlDPE=3SV=1	REV__tr|A0A7D7A171|A0A7D7A171_9CLOTMannitol-1-phosphate5-dehydrogenaseOS=ClostridiumintestinaleOX=36845GN=mtlDPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.6207275390625	2	509.269813	1016.52507	0.28133	0.00014327	-0.67756	-0.00034506	-0.39623	-0.00020179	509.2695463651614	57.877	0.41814	57.877	57.609	58.027	0					18	9	3	0	0	0	0.028476	1	4870	4870		14.865	8.5522	1	448040	+		60312	32475	49750	49796	66102	66102					0.017470804324716482
VKEEDYMDN	9	Unmodified	_VKEEDYMDN_					0	0	0			REV__ENST00000565455.5_1_16:8987857-9023250:-|nuORF;REV__ENST00000505925.1_1_5:107062182-107062734:+|nuORF	REV__ENST00000505925.1_1_5:107062182-107062734:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.316162109375	2	571.737154	1141.45975	0.79075	0.0004521	-2.1766	-0.0012444	-1.3858	-0.00079232	571.7357312853806	153.51	0.73795	153.51	153.05	153.78	0					25	14	2	0	0	0	0.027462	1	17986	17986		42.864	12.361	1	36295	+		60313	22646;26883	49751	49797	66103	66103					-0.10531701875515864
VKEEEYEK	8	Unmodified	_VKEEEYEK_					0	0	0			REV__tr|A0A7D6ZUJ0|A0A7D6ZUJ0_9CLOTPhosphatidylserinedecarboxylaseproenzymeOS=ClostridiumintestinaleOX=36845GN=psdPE=3SV=1	REV__tr|A0A7D6ZUJ0|A0A7D6ZUJ0_9CLOTPhosphatidylserinedecarboxylaseproenzymeOS=ClostridiumintestinaleOX=36845GN=psdPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	527.3561401367188	2	527.258579	1052.50261	-1.6028	-0.00084508	-1.891	-0.00099703	-3.4938	-0.0018421	527.2578339482326	85.239	0.39243	83.018	82.792	83.184	-2.2204					11	7	2	0	0	0	0.028476	1	4980	4980		30.504	3.7075	1	19274	+		60314	32221	49752	49798	66104	66104					-0.02154563755811978
VKEGILSDD	9	Unmodified	_VKEGILSDD_					0	0	0		ENST00000511640.1_1_5:25909808-25910855:+|nuORF	ENST00000511640.1_1_5:25909808-25910855:+|nuORF	ENST00000511640.1_1_5:25909808-25910855:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.7802429199219	2	488.253297	974.492041	-0.59605	-0.00029102	1.5614	0.00076238	0.9654	0.00047136	488.25399251307954	70.427	0.35574	70.427	70.21	70.565	0					13	8	2	0	0	0	0.027462	1	6720	6720		44.117	0	1	299270			60315	12984	49753	49799	66105	66105					0.0037745358977190335
VKEGIYRL	8	Unmodified	_VKEGIYRL_					0	0	0			REV__tr|A0A7D7A1L8|A0A7D7A1L8_9CLOTPyruvatecarboxylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15885PE=4SV=1	REV__tr|A0A7D7A1L8|A0A7D7A1L8_9CLOTPyruvatecarboxylaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15885PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.29364013671875	2	489.292559	976.570566	-0.21147	-0.00010347	-0.27227	-0.00013322	-0.48374	-0.00023669	489.2923227920162	62.85	1.4513	59.392	58.864	60.315	-3.4577					71	29	4	0	0	0	0.61436	1	4396	4396		60.972	7.6205	1	595490	+		60316	32498	49754	49800	66106	66106					0.0813435068552053
VKELLARLPE	10	Unmodified	_VKELLARLPE_					0	0	0			REV__ENSG00000204480|ENST00000376101|PRAMEF19	REV__ENSG00000204480|ENST00000376101|PRAMEF19	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3567504882812	2	584.358431	1166.70231	-2.312	-0.0013511	-1.149	-0.00067141	-3.461	-0.0020225	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.73378	1	14560	14560		26.693	2.1737	1	180810	+		60317	23159	49755	49801	66107	66107					0.12562535982578993
VKEPAKIIE	9	Unmodified	_VKEPAKIIE_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.P12974Lfs*4|1|0.05|ENSG00000155657|chr2:178631204-178631205|-/GTACA|frameshift_variant;TTN|p.E11597Rfs*5|1|0.5|ENSG00000155657|chr2:178651954-178651954|A/-|frameshift_variant;TTN|p.R11195Efs*5|1|0.15|ENSG00000155657|chr2:178674318-178674318|A/-|frameshift_variant;TTN|p.E9011Nfs*14|1|0.03|ENSG00000155657|chr2:178711255-178711255|T/-|frameshift_variant;TTN|p.G8550Tfs*3|1|0.05|ENSG00000155657|chr2:178714032-178714059|ATTTGTTGTCACTTGTTAGCTCTTTTCC/-|frameshift_variant;TTN|p.S7694Qfs*32|1|0.04|ENSG00000155657|chr2:178719360-178719360|G/-|frameshift_variant;TTN|p.C7689Pfs*18|1|0.03|ENSG00000155657|chr2:178719373-178719374|CA/-|frameshift_variant;TTN|p.L7641Yfs*6|1|0.07|ENSG00000155657|chr2:178719621-178719621|T/-|frameshift_variant;TTN|p.T6904Lfs*6|1|0.08|ENSG00000155657|chr2:178723439-178723439|T/-|frameshift_variant;TTN|p.V5150Afs*3|1|0.06|ENSG00000155657|chr2:178732661-178732661|A/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OvCa9_classI_Rep2	2	513.8150024414062	2	513.813325	1025.6121	-0.4504	-0.00023142	3.9685	0.002039	3.5181	0.0018076	513.8152848157494	74.741	2.4404	72.77	72.324	74.764	-1.9711					110	46	3	0	0	0	0.40667	1	6114	6114		51.335	1.3109	1	2623500			60318	5793;36288	49756	49802	66108	66108					0.10031486654202126
VKEPAKIIE	9	Unmodified	_VKEPAKIIE_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.P12974Lfs*4|1|0.05|ENSG00000155657|chr2:178631204-178631205|-/GTACA|frameshift_variant;TTN|p.E11597Rfs*5|1|0.5|ENSG00000155657|chr2:178651954-178651954|A/-|frameshift_variant;TTN|p.R11195Efs*5|1|0.15|ENSG00000155657|chr2:178674318-178674318|A/-|frameshift_variant;TTN|p.E9011Nfs*14|1|0.03|ENSG00000155657|chr2:178711255-178711255|T/-|frameshift_variant;TTN|p.G8550Tfs*3|1|0.05|ENSG00000155657|chr2:178714032-178714059|ATTTGTTGTCACTTGTTAGCTCTTTTCC/-|frameshift_variant;TTN|p.S7694Qfs*32|1|0.04|ENSG00000155657|chr2:178719360-178719360|G/-|frameshift_variant;TTN|p.C7689Pfs*18|1|0.03|ENSG00000155657|chr2:178719373-178719374|CA/-|frameshift_variant;TTN|p.L7641Yfs*6|1|0.07|ENSG00000155657|chr2:178719621-178719621|T/-|frameshift_variant;TTN|p.T6904Lfs*6|1|0.08|ENSG00000155657|chr2:178723439-178723439|T/-|frameshift_variant;TTN|p.V5150Afs*3|1|0.06|ENSG00000155657|chr2:178732661-178732661|A/-|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OvCa9_classI_Rep3	3	513.8154296875	2	513.813325	1025.6121	-0.17927	-9.2113E-05	3.3719	0.0017325	3.1926	0.0016404	513.8151245610528	74.922	2.6818	72.512	71.994	74.676	-2.4106					138	52	4	0	0	0	0.27001	3	3743	3743;3792;3810		66.429	15.094	1	3292300			60319	5793;36288	49756	49802	66109;66110;66111	66109					0.10031486654202126
VKEPRYLL	8	Unmodified	_VKEPRYLL_					0	0	0		ENSG00000124201|ENST00000396105|ZNFX1;ZNFX1|p.V1053Afs*12|1|0.06|ENSG00000124201|chr20:49252778-49252779|-/TCTCGGCTCACTGCAACCACCG|frameshift_variant;nc|ENSG00000124201|Q9P2E3-2|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	ENSG00000124201|ENST00000396105|ZNFX1	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.26739501953125	2	509.30821	1016.60187	2.5301	0.0012886	-0.33582	-0.00017103	2.1943	0.0011176	509.30799617602537	80.495	0.42782	80.495	80.274	80.702	0					15	9	2	0	0	0	0.028476	1	8243	8243		26.693	0	1	369050			60320	3631	49758	49803	66112	66112					0.09422923719614573
VKERAQNN	8	Unmodified	_VKERAQNN_					0	0	0		ENST00000490128.1_1_4:75147152-75154058:+|nuORF	ENST00000490128.1_1_4:75147152-75154058:+|nuORF	ENST00000490128.1_1_4:75147152-75154058:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.80010986328125	2	479.756872	957.499192	-0.47858	-0.0002296	0.6111	0.00029318	0.13252	6.3576E-05	479.757351631504	39.511	0.12667	39.511	39.42	39.547	0					4	2	2	0	0	0	0.028476	1	2320	2320		79.451	0	1	46231			60321	12691	49759	49804	66113	66113					0.018742309808544633
VKERHIQLVK	10	Unmodified	_VKERHIQLVK_					0	0	0		GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant;ENSG00000131459|ENST00000253778|GFPT2;GFPT2|p.K136Qfs*18|1|0.12|ENSG00000131459|chr5:180330828-180330829|-/TG|frameshift_variant	GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant	GFPT2|p.D670Gfs*14|1|0.07|ENSG00000131459|chr5:180301604-180301605|-/TTGGCCGTTAC|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	626.3397827148438	2	625.390596	1248.76664	2.1467	0.0013426	0.49055	0.00030678	2.6373	0.0016493	625.3907672647966	123.76	0.77522	122.72	122.46	123.24	-1.0377					28	14	3	0	0	0	0.026826	1	9557	9557		44.377	3.599	1	56346			60322	4066	49760	49805	66114	66114					0.1522073585938415
VKERSVTIGT	10	Unmodified	_VKERSVTIGT_					0	0	0			REV__nc|ENSG00000131016|Q02952-3|AKAP12	REV__nc|ENSG00000131016|Q02952-3|AKAP12	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3169555664062	2	545.316763	1088.61897	-1.7047	-0.0009296	1.3026	0.00071033	-0.40209	-0.00021926	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.75313	1	14193	14193		24.519	0.31644	1	202430	+		60323	18990	49761	49806	66115	66115					0.07820799534783873
VKESHGKDI	9	Unmodified	_VKESHGKDI_					0	0	0		ENSG00000177181|ENST00000431473|RIMKLA	ENSG00000177181|ENST00000431473|RIMKLA	ENSG00000177181|ENST00000431473|RIMKLA	MULTI-MSMS	OvCa99_classI_Rep5	1	506.7762145996094	2	506.774731	1011.53491	-0.45548	-0.00023083	0.21911	0.00011104	-0.23638	-0.00011979	506.7747341409929	55.336	0.69942	55.336	55.064	55.764	0					42	16	4	0	0	0	0.13482	1	4516	4516		87.754	0.057861	1	6911000			60324	7665	49762	49807	66116	66116					0.029602684378687627
VKESKPTQ	8	Unmodified	_VKESKPTQ_					0	0	0		tr|A0A7D6W0P3|A0A7D6W0P3_9CLOTDNApolymeraseIIIsubunitgamma/tauOS=ClostridiumintestinaleOX=36845GN=dnaXPE=3SV=1	tr|A0A7D6W0P3|A0A7D6W0P3_9CLOTDNApolymeraseIIIsubunitgamma/tauOS=ClostridiumintestinaleOX=36845GN=dnaXPE=3SV=1	tr|A0A7D6W0P3|A0A7D6W0P3_9CLOTDNApolymeraseIIIsubunitgamma/tauOS=ClostridiumintestinaleOX=36845GN=dnaXPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.7870788574219	2	458.758549	915.502546	-0.089948	-4.1264E-05	0.65947	0.00030254	0.56953	0.00026128	458.7582872366396	56.604	0.60984	56.604	56.052	56.662	0					21	14	2	0	0	0	0.028476	1	4626	4626		19.997	0	1	431960			60325	35383	49763	49808	66117	66117					0.04141481034866956
VKETVEVTPL	10	Unmodified	_VKETVEVTPL_					0	0	0			REV__nc|ENSG00000100629|Q6ZU80-1|CEP128	REV__nc|ENSG00000100629|Q6ZU80-1|CEP128	MULTI-MSMS	OvCa9_classI_Rep2	2	557.8206787109375	2	557.821347	1113.62814	0.27631	0.00015413	0.87873	0.00049017	1.155	0.00064431	557.8217188413842	98.133	1.2816	97.24	96.924	98.206	-0.89305					56	25	3	0	0	0	0.64697	1	8916	8916		36.447	0	1	327620	+		60326	17440	49764	49809	66118	66118					0.07587148100446939
VKEVKKDL	8	Unmodified	_VKEVKKDL_					0	0	0			REV__ENSG00000096384|ENST00000371646|HSP90AB1;REV__nc|ENSG00000183199|Q58FF7|HSP90AB3P	REV__ENSG00000096384|ENST00000371646|HSP90AB1	MULTI-MSMS	OvCa99_classI_Rep5	1	479.800048828125	2	479.800217	957.585882	-0.52766	-0.00025317	-0.49274	-0.00023642	-1.0204	-0.00048959	479.8000047500225	39.553	4.148	39.553	39.287	43.435	0					132	94	2	0	0	0	0.062366	3	2350	2350;2381;2405		153.04	13.065	1	33169000	+		60327	17305;29047	49765	49810	66119;66120;66121	66119					0.1053921748269886
VKEVKKVE	8	Unmodified	_VKEVKKVE_					0	0	0		ENSG00000167880|ENST00000301607|EVPL	ENSG00000167880|ENST00000301607|EVPL	ENSG00000167880|ENST00000301607|EVPL	MULTI-MSMS	OvCa99_classI_Rep5	1	479.8004455566406	2	479.800217	957.585882	-0.52766	-0.00025317	-0.49274	-0.00023642	-1.0204	-0.00048959	479.8000047500225	39.553	4.148	39.553	39.287	43.435	0					132	94	2	0	0	0	0.60899	1	2467	2467		62.107	1.9892	1	33169000			60328	6845	49766	49811	66122	66122					0.10539217482710228
VKEYIRAIEE	10	Unmodified	_VKEYIRAIEE_					0	0	0		tr|A0A7D6ZWW4|A0A7D6ZWW4_9CLOTCytosine-specificmethyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09470PE=3SV=1	tr|A0A7D6ZWW4|A0A7D6ZWW4_9CLOTCytosine-specificmethyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09470PE=3SV=1	tr|A0A7D6ZWW4|A0A7D6ZWW4_9CLOTCytosine-specificmethyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09470PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	625.345458984375	2	625.342978	1248.6714	2.0578	0.0012868	1.1995	0.00075011	3.2573	0.0020369	625.3438117346375	78.321	0.69813	78.321	78.011	78.709	0					32	16	3	0	0	0	0.61634	1	7940	7940		40.058	4.9061	1	987050			60329	35857	49767	49812	66123	66123					0.05701337877735568
VKFHRSRRL	9	Unmodified	_VKFHRSRRL_					0	0	0		nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	MULTI-MSMS	OvCa9_classI_Rep4_	4	400.24896240234375	3	400.247507	1197.72069	2.3259	0.00093092	-3.6555	-0.0014631	-1.3296	-0.00053217	400.2459940700074	56.884	1.8279	53.539	53.171	54.999	-3.3449					107	35	5	0	0	0	0.40818	1	3657	3657		51.193	1.1592	1	994040			60330	5228	49768	49813	66124	66124					0.12974135467834458
VKFKDTVI	8	Unmodified	_VKFKDTVI_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MSMS	OvCa99_classI_Rep5	1	475.2915954589844	2	475.289485	948.564418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	94.662	1	94.662	94.162	95.162	0								0	0	0	0.30129	1	10310	10310		47.916	1.9636	1				60331	5793;36288	49769	49814	66125	66125					0.08807832453976516
VKFKSEEQAMK	11	Unmodified	_VKFKSEEQAMK_					0	0	0		ENSG00000183808|ENST00000520560|RBM12B	ENSG00000183808|ENST00000520560|RBM12B	ENSG00000183808|ENST00000520560|RBM12B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	441.7796325683594	3	442.235834	1323.68567	-1.1103	-0.000491	-3.2203	-0.0014241	-4.3306	-0.0019151	442.56842822197535	41.807	0.31263	38.827	38.593	38.906	-2.9804					7	5	2	0	0	0	0.026174	1	1901	1901		17.167	1.8336	1	8139.2			60332	8109	49770	49815	66126	66126					0.036776670343442674
VKFLDGDVKI	10	Unmodified	_VKFLDGDVKI_					0	0	0			REV__tr|A0A7D6ZZ24|A0A7D6ZZ24_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04710PE=4SV=1	REV__tr|A0A7D6ZZ24|A0A7D6ZZ24_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04710PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3289184570312	2	567.331882	1132.64921	-1.6483	-0.00093515	-2.1618	-0.0012264	-3.8101	-0.0021616	567.3305014697371	141.66	3.9446	141.43	139.35	143.3	-0.22697					200	79	3	0	0	0	0.71173	1	14177	14177		29.17	2.4771	1	83872	+		60333	32397	49771	49816	66127	66127					0.0881915819995811
VKFLDKPMR	9	Unmodified	_VKFLDKPMR_					0	0	0			REV__ENST00000445681.1_1_7:65958944-65960296:+|nuORF	REV__ENST00000445681.1_1_7:65958944-65960296:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3292236328125	2	567.328619	1132.64269	-2.3399	-0.0013275	4.3821	0.0024861	2.0422	0.0011586	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.70177	1	14680	14680		17.365	0.89182	1	241060	+		60334	25890	49772	49817	66128	66128					0.08166941767581193
VKFLRWEL	8	Unmodified	_VKFLRWEL_					0	0	0		tr|A0A553SKP6|A0A553SKP6_NIACISporulationproteinYqfDOS=NialliacirculansOX=1397GN=yqfDPE=4SV=1	tr|A0A553SKP6|A0A553SKP6_NIACISporulationproteinYqfDOS=NialliacirculansOX=1397GN=yqfDPE=4SV=1	tr|A0A553SKP6|A0A553SKP6_NIACISporulationproteinYqfDOS=NialliacirculansOX=1397GN=yqfDPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	545.8263549804688	2	545.824027	1089.6335	1.7429	0.0009513	3.3443	0.0018254	5.0872	0.0027767	545.8256638681223	92.097	1.0554	92.097	91.459	92.515	0					53	24	4	0	0	0	0.66057	1	9955	9955		51.335	3.6781	1	3759400			60335	33640	49773	49818	66129	66129					0.09226916473539859
VKFVGKTLTGT	11	Unmodified	_VKFVGKTLTGT_					0	0	0			REV__tr|A0A7D6ZSI3|A0A7D6ZSI3_9CLOTCd(2+)-exportingATPaseOS=ClostridiumintestinaleOX=36845GN=cadAPE=3SV=1	REV__tr|A0A7D6ZSI3|A0A7D6ZSI3_9CLOTCd(2+)-exportingATPaseOS=ClostridiumintestinaleOX=36845GN=cadAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8430786132812	2	575.845156	1149.67576	-4.018	-0.0023138	0.54994	0.00031668	-3.4681	-0.0019971	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.70142	1	12270	12270		29.17	2.4771	1	445630	+		60336	32189	49774	49819	66130	66130					0.10690847091268552
VKFVNNLIK	9	Unmodified	_VKFVNNLIK_					0	0	0		ENST00000389805.8_1_5:179264101-179264254:+|nuORF	ENST00000389805.8_1_5:179264101-179264254:+|nuORF	ENST00000389805.8_1_5:179264101-179264254:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	537.807373046875	2	537.837134	1073.65972	0.67277	0.00036184	-2.3023	-0.0012382	-1.6295	-0.00087641	537.8358125350637	98.079	0.92358	96.32	96.011	96.934	-1.7595					28	17	3	0	0	0	0.027448	1	6547	6547		53.351	0	1	36189			60337	11199	49775	49820	66131	66131					0.12583185645030426
VKFWLESR	8	Unmodified	_VKFWLESR_					0	0	0		ENST00000429345.5_1_6:6564539-6569721:-|nuORF	ENST00000429345.5_1_6:6564539-6569721:-|nuORF	ENST00000429345.5_1_6:6564539-6569721:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.278076171875	2	532.798009	1063.58147	2.9359	0.0015643	1.9562	0.0010423	4.8922	0.0026065	533.3011333791753	115.98	0.18532	115.98	115.82	116	0					5	3	2	0	0	0	0.028476	1	13262	13262		25.574	0.12388	1	40279			60338	11779	49776	49821	66132	66132					0.05221753059799994
VKGEKKSLD	9	Unmodified	_VKGEKKSLD_					0	0	0			REV__ENSG00000241322|ENST00000395906|FBXW10B	REV__ENSG00000241322|ENST00000395906|FBXW10B	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.310302734375	2	502.292756	1002.57096	-0.36116	-0.00018141	0.17649	8.8652E-05	-0.18467	-9.2756E-05	502.29283372725735	47.689	0.43237	47.689	47.465	47.897	0					15	9	2	0	0	0	0.027462	1	3464	3464		21.96	6.3181	1	314240	+		60339	23446	49777	49822	66133	66133					0.06977725614717656
VKGGEIPGR	9	Unmodified	_VKGGEIPGR_					0	0	0		ENST00000483588.2_1_17:16366606-16367262:+|nuORF	ENST00000483588.2_1_17:16366606-16367262:+|nuORF	ENST00000483588.2_1_17:16366606-16367262:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.2520751953125	2	456.766709	911.518865	0.87745	0.00040079	-0.25568	-0.00011679	0.62176	0.000284	456.76621487174356	67.085	0.74968	67.085	66.739	67.489	0					46	18	4	0	0	0	0.027455	1	6234	6234		34.173	0	1	1044700			60340	12588	49778	49823	66134	66134					0.05956606991605895
VKGGEIPGR	9	Unmodified	_VKGGEIPGR_					0	0	0		ENST00000483588.2_1_17:16366606-16367262:+|nuORF	ENST00000483588.2_1_17:16366606-16367262:+|nuORF	ENST00000483588.2_1_17:16366606-16367262:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	456.766709	911.518865	0.5245	0.00023958	-0.67631	-0.00030892	-0.15181	-6.9341E-05	456.76613063065014	69.504	1.3981	66.883	66.266	67.664	-2.6203	-0.082495	-0.0005776	NaN	26.693	49	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32526			60341	12588	49778	49823							0.05956606991605895
VKGGEIPGR	9	Unmodified	_VKGGEIPGR_					0	0	0		ENST00000483588.2_1_17:16366606-16367262:+|nuORF	ENST00000483588.2_1_17:16366606-16367262:+|nuORF	ENST00000483588.2_1_17:16366606-16367262:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	456.766709	911.518865	-0.59874	-0.00027348	1.9244	0.00087901	1.3257	0.00060553	456.76659237794655	70.41	1.4078	66.929	66.442	67.849	-3.4812	-0.037136	0.0017983	NaN	26.693	38	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88137			60342	12588	49778	49823							0.05956606991605895
VKGHTVLL	8	Unmodified	_VKGHTVLL_					0	0	0			REV__nc|ENSG00000004838|O75800-2|ZMYND10	REV__nc|ENSG00000004838|O75800-2|ZMYND10	MULTI-MSMS	OvCa9_classI_Rep4_	4	433.777099609375	2	433.776545	865.538538	1.3486	0.00058498	-1.5043	-0.00065254	-0.15575	-6.7562E-05	433.775716822817	84.294	1.329	81.632	81.265	82.594	-2.6629					64	27	3	0	0	0	0.64026	1	7037	7037		55.504	0	1	776900	+		60343	16383	49779	49824	66135	66135					0.10038983002368695
VKGKGRIK	8	Unmodified	_VKGKGRIK_					0	0	0			REV__tr|A0A553SP28|A0A553SP28_NIACISignalrecognitionparticleproteinOS=NialliacirculansOX=1397GN=ffhPE=3SV=1	REV__tr|A0A553SP28|A0A553SP28_NIACISignalrecognitionparticleproteinOS=NialliacirculansOX=1397GN=ffhPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.2931823730469	2	443.303262	884.59197	0.88537	0.00039249	2.9107	0.0012903	3.7961	0.0016828	443.3046965402194	56.559	0.24663	56.559	56.498	56.744	0					6	5	2	0	0	0	0.028476	1	4715	4715		33.516	1.5607	1	83292	+		60344	30481	49780	49825	66136	66136					0.14505780504873655
VKGKGSHTF	9	Unmodified	_VKGKGSHTF_					0	0	0			REV__LCTL|p.W241Gfs*20|1|0.09|ENSG00000188501|chr15:66558022-66558022|G/-|frameshift_variant	REV__LCTL|p.W241Gfs*20|1|0.09|ENSG00000188501|chr15:66558022-66558022|G/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.717529296875	2	480.766709	959.518865	-0.3121	-0.00015005	3.6426	0.0017512	3.3305	0.0016012	480.7686109314529	38.914	0.26986	38.914	38.793	39.063	0					9	5	2	0	0	0	0.027462	1	2232	2232		27.882	19.651	1	87624	+		60345	22714	49781	49826	66137	66137					0.037486069915985354
VKGLAVNLTL	10	Unmodified	_VKGLAVNLTL_					0	0	0			REV__nc|ENSG00000111325|Q6N063-4|OGFOD2	REV__nc|ENSG00000111325|Q6N063-4|OGFOD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.799560546875	2	514.329142	1026.64373	-0.74017	-0.00038069	-0.26765	-0.00013766	-1.0078	-0.00051835	514.3292740734563	61.48	0.25294	61.48	61.289	61.542	0					7	5	2	0	0	0	0.027174	1	5420	5420		14.865	0	1	64533	+		60346	18026	49782	49827	66138	66138					0.13147479408144136
VKGLISRGA	9	Unmodified	_VKGLISRGA_					0	0	0		nc|ENSG00000132952|Q5W0Q7-2|USPL1;USPL1|p.M998Dfs*4|1|0.03|ENSG00000132952|chr13:30659068-30659069|-/G|frameshift_variant;ENSG00000132952|ENST00000255304|USPL1	nc|ENSG00000132952|Q5W0Q7-2|USPL1	nc|ENSG00000132952|Q5W0Q7-2|USPL1	MULTI-MSMS	OvCa99_classI_Rep5	1	450.78497314453125	2	450.784902	899.55525	-0.14553	-6.5601E-05	-0.99428	-0.00044821	-1.1398	-0.00051381	450.78450405514036	42.518	3.0461	42.518	42.199	45.245	0					153	69	5	0	0	0	0.11471	1	2723	2723		93.195	2.4188	1	39385000			60347	4185	49783	49828	66139	66139					0.10145483888322815
VKGLLFVL	8	Unmodified	_VKGLLFVL_					0	0	0			REV__ENST00000533685.1_1_11:64900606-64900720:-|nuORF	REV__ENST00000533685.1_1_11:64900606-64900720:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.9089660644531	2	444.799489	887.584425	0.54821	0.00024384	-3.5971	-0.0016	-3.0489	-0.0013561	444.7977750166684	41.205	0.49163	41.205	41.014	41.505	0					24	10	3	0	0	0	0.028476	1	2532	2532		8.8223	0	1	235430	+		60348	20726	49784	49829	66140	66140					0.13613628184612026
VKGLLLQV	8	Unmodified	_VKGLLLQV_					0	0	0			REV__ENSG00000168495|ENST00000306433|POLR3D	REV__ENSG00000168495|ENST00000306433|POLR3D	MULTI-SECPEP	OvCa9_classI_Rep4_	4	435.2777404785156	2	435.294571	868.574589	0.52205	0.00022724	-1.3727	-0.00059752	-0.85064	-0.00037028	435.29387598719137	75.122	0.96694	71.891	71.629	72.596	-3.2308					34	19	3	0	0	0	0.028476	1	5876	5876		85.359	3.0545	1	100470	+		60349	21382	49785	49830	66141	66141					0.13504440179235644
VKGLLLQV	8	Unmodified	_VKGLLLQV_					0	0	0			REV__ENSG00000168495|ENST00000306433|POLR3D	REV__ENSG00000168495|ENST00000306433|POLR3D	MULTI-MATCH	OvCa9_classI_Rep2	2		2	435.294571	868.574589	-0.082002	-3.5695E-05	-0.17024	-7.4106E-05	-0.25225	-0.0001098	435.29433049268073	73.888	1.1046	71.806	71.476	72.581	-2.0821	0.040299	0.00010966	NaN	85.359	44	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83545	+		60350	21382	49785	49830							0.13504440179235644
VKGLLLQV	8	Unmodified	_VKGLLLQV_					0	0	0			REV__ENSG00000168495|ENST00000306433|POLR3D	REV__ENSG00000168495|ENST00000306433|POLR3D	MULTI-MATCH	OvCa9_classI_Rep3	3		2	435.294571	868.574589	0.14496	6.3102E-05	-0.17112	-7.4489E-05	-0.026158	-1.1387E-05	435.29438055250665	74.087	1.1846	71.599	71.275	72.459	-2.4873	-0.16603	0.00010889	NaN	85.359	44	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85442	+		60351	21382	49785	49830							0.13504440179235644
VKGMVQVK	8	Unmodified	_VKGMVQVK_					0	0	0			REV__ZMPSTE24-CAP1|1|fusion	REV__ZMPSTE24-CAP1|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.9210510253906	2	444.770406	887.526258	-0.038726	-1.7224E-05	-0.38766	-0.00017242	-0.42639	-0.00018964	444.77019874532283	37.092	1.2743	37.092	36.84	38.114	0					65	27	4	0	0	0	0.028476	1	1978	1978		18.324	14.64	1	3470000	+		60352	32772	49786	49831	66142	66142					0.07799623267681
VKGRFTISR	9	Unmodified	_VKGRFTISR_					0	0	0		nc|ENSG00000211955|P0DP02|IGHV3-30-3;nc|ENSG00000270550|P0DP03|IGHV3-30-5;nc|ENSG00000211955|P01772|IGHV3-33;ENSG00000259680|ENST00000569103|IGHV3OR16-17;nc|ENSG00000211964|P01763|IGHV3-48;nc|ENSG00000211976|A0A0B4J1V6|IGHV3-73;nc|ENSG00000211965|A0A0A0MS15|IGHV3-49;nc|ENSG00000211943|A0A0B4J1V0|IGHV3-15;nc|ENSG00000223648|A0A075B6Q5|IGHV3-64;nc|ENSG00000232216|A0A0B4J1X8|IGHV3-43;nc|ENSG00000224650|A0A0B4J1X5|IGHV3-74;nc|ENSG00000211946|A0A0C4DH32|IGHV3-20;nc|ENSG00000211949|P01764|IGHV3-23;nc|ENSG00000211972|A0A0C4DH42|IGHV3-66;nc|ENSG00000211941|P01762|IGHV3-11;nc|ENSG00000211938|P01780|IGHV3-7;nc|ENSG00000211947|A0A0B4J1V1|IGHV3-21;nc|ENSG00000282639|A0A0J9YX35|IGHV3-64D;nc|ENSG00000211942|P01766|IGHV3-13;nc|ENSG00000211967|P01767|IGHV3-53;nc|ENSG00000225698|A0A0B4J1Y9|IGHV3-72	nc|ENSG00000211955|P0DP02|IGHV3-30-3	nc|ENSG00000211955|P0DP02|IGHV3-30-3	MULTI-MSMS	OvCa99_classI_Rep5	1	532.322021484375	2	532.322183	1062.62981	-0.27651	-0.00014719	-0.51225	-0.00027268	-0.78876	-0.00041987	532.3219154166727	44.728	1.585	44.728	44.484	46.069	0					88	35	5	0	0	0	0.51865	1	3077	3077		40.778	2.9666	1	12016000			60353	15303	49787	49832	66143	66143					0.101002466996988
VKGRTEILKW	10	Unmodified	_VKGRTEILKW_					0	0	0		nc|ENSG00000136758|Q96TA2-3|YME1L1;ENSG00000136758|ENST00000376016|YME1L1;nc|ENSG00000136758|Q96TA2|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	nc|ENSG00000136758|Q96TA2-3|YME1L1	MULTI-SECPEP	OvCa99_classI_Rep5	1	614.8331909179688	2	615.371872	1228.72919	1.0598	0.00065218	2.5538	0.0015715	3.6136	0.0022237	615.373877538827	150.62	0.15138	150.62	150.54	150.69	0					4	2	2	0	0	0	0.02661	1	17636	17636		68.787	6.6794	1	18476			60354	4511	49788	49833	66144	66144					0.1239764459376147
VKGSEFSANL	10	Unmodified	_VKGSEFSANL_					0	0	0		ENSG00000180884|ENST00000404801|ZNF792	ENSG00000180884|ENST00000404801|ZNF792	ENSG00000180884|ENST00000404801|ZNF792	MULTI-MSMS	OvCa99_classI_Rep5	1	526.2733154296875	2	526.274564	1050.53457	0.48606	0.0002558	-2.9419	-0.0015483	-2.4558	-0.0012925	526.2726202383727	105.65	0.74136	105.65	105.4	106.14	0					21	11	3	0	0	0	0.17251	1	11875	11875		98.582	16.341	1	1682800			60355	7895	49789	49834	66145	66145					0.011328487179980584
VKGSKIDLIF	10	Unmodified	_VKGSKIDLIF_					0	0	0		tr|A0A7D6VRT5|A0A7D6VRT5_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13410PE=4SV=1	tr|A0A7D6VRT5|A0A7D6VRT5_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13410PE=4SV=1	tr|A0A7D6VRT5|A0A7D6VRT5_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13410PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	560.3392944335938	2	560.342249	1118.66995	-7.144	-0.0040031	3.6168	0.0020266	-3.5273	-0.0019765	560.3441648343594	161.4	2.0053	160.03	159.58	161.59	-1.3692					105	41	5	0	0	0	0.79213	1	14075	14075		19.997	2.5288	1	475740			60356	34954	49790	49835	66146	66146					0.11535748579603933
VKGSKPIVKL	10	Unmodified	_VKGSKPIVKL_					0	0	0			REV__tr|A0A7D6VQJ0|A0A7D6VQJ0_9CLOTLargeribosomalsubunitproteinuL24OS=ClostridiumintestinaleOX=36845GN=rplXPE=3SV=1	REV__tr|A0A7D6VQJ0|A0A7D6VQJ0_9CLOTLargeribosomalsubunitproteinuL24OS=ClostridiumintestinaleOX=36845GN=rplXPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	534.8619384765625	2	534.860609	1067.70667	1.8051	0.00096546	0.18511	9.9008E-05	1.9902	0.0010645	534.8605314220739	112.63	0.72067	112.63	112.3	113.02	0					39	15	4	0	0	0	0.40664	1	12817	12817		67.494	3.2864	1	551110	+		60357	31329	49791	49836	66147	66147					0.17552045196180188
VKGSSLEVFLV	11	Unmodified	_VKGSSLEVFLV_					0	0	0			REV__nc|ENSG00000168843|Q8N475-3|FSTL5	REV__nc|ENSG00000168843|Q8N475-3|FSTL5	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3423461914062	2	589.344989	1176.67542	-3.0463	-0.0017953	-0.38122	-0.00022467	-3.4276	-0.00202	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.71191	1	15113	15113		25.574	0	1	272220	+		60358	21410	49792	49837	66148	66148					0.09415427371413898
VKGTGANGSF	10	Unmodified	_VKGTGANGSF_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.2322998046875	2	469.240524	936.466495	-0.46951	-0.00022031	-0.042427	-1.9908E-05	-0.51193	-0.00024022	469.2408756434535	49.325	0.34456	49.325	49.206	49.55	0					9	7	2	0	0	0	0.026681	1	3685	3685		36.447	7.2972	1	100910			60359	8199	49793	49838	66149	66149					-0.00427976141986619
VKGVNIIP	8	Unmodified	_VKGVNIIP_					0	0	0		tr|A0A7D6VY79|A0A7D6VY79_9CLOTDUF1449familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11675PE=4SV=1	tr|A0A7D6VY79|A0A7D6VY79_9CLOTDUF1449familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11675PE=4SV=1	tr|A0A7D6VY79|A0A7D6VY79_9CLOTDUF1449familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11675PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	420.27117919921875	2	420.271096	838.527639	-1.0256	-0.00043103	1.3954	0.00058645	0.36979	0.00015541	420.2715248845695	120.07	1.0858	119.9	119.59	120.68	-0.17138					43	21	3	0	0	0	0.7043	1	11574	11574		42.474	0	1	82171			60360	35322	49794	49839	66150	66150					0.1019158062807719
VKHKKGNG	8	Unmodified	_VKHKKGNG_					0	0	0			REV__nc|ENSG00000118058|Q03164-2|KMT2A	REV__nc|ENSG00000118058|Q03164-2|KMT2A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.78155517578125	2	434.261594	866.508634	0.92314	0.00040088	1.9181	0.00083296	2.8412	0.0012338	434.26088613129633	60.145	1.5349	56.715	56.309	57.844	-3.43					44	30	2	0	0	0	0.028476	1	4181	4181		7.6903	0	1	60045	+		60361	18378	49795	49840	66151	66151					0.07004044057043757
VKHKLLRQ	8	Unmodified	_VKHKLLRQ_					0	0	0		ENSG00000163541|ENST00000393868|SUCLG1	ENSG00000163541|ENST00000393868|SUCLG1	ENSG00000163541|ENST00000393868|SUCLG1	MULTI-SECPEP	OvCa9_classI_Rep2	2	511.3101501464844	2	511.335093	1020.65563	-1.1547	-0.00059042	4.1159	0.0021046	2.9612	0.0015142	511.83839158500103	53.764	0.19925	50.95	50.826	51.025	-2.8139					5	3	2	0	0	0	0.028476	1	3645	3645		13.775	0	1	3061.5			60362	6323	49796	49841	66152	66152					0.14613140941992242
VKHQKLLF	8	Unmodified	_VKHQKLLF_					0	0	0			REV__nc|ENSG00000140199|Q9UHW9-6|SLC12A6	REV__nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.7324523925781	2	506.818744	1011.62294	-0.27487	-0.00013931	-3.7633	-0.0019073	-4.0382	-0.0020466	506.8167595956446	65.027	1.1612	61.541	61.066	62.227	-3.4854					38	23	2	0	0	0	0.028476	1	4678	4678		28.254	15.295	1	85613	+		60363	28892	49797	49842	66153	66153					0.11758933819146478
VKHQKLLF	8	Unmodified	_VKHQKLLF_					0	0	0			REV__nc|ENSG00000140199|Q9UHW9-6|SLC12A6	REV__nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	506.818744	1011.62294	-0.91027	-0.00046134	-3.0296	-0.0015355	-3.9399	-0.0019968	506.8170929434534	64.207	1.4194	61.482	60.709	62.128	-2.7245	-0.029684	0.00030417	NaN	28.254	44	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58492	+		60364	28892	49797	49842							0.11758933819146478
VKHRSCKVK	9	Unmodified	_VKHRSCKVK_					0	0	0			REV__SPOCK2|p.D206Efs*25|1|0.11|ENSG00000107742|chr10:72067701-72067704|CAGG/-|frameshift_variant	REV__SPOCK2|p.D206Efs*25|1|0.11|ENSG00000107742|chr10:72067701-72067704|CAGG/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	542.8258056640625	2	542.824035	1083.63352	-0.26046	-0.00014139	4.0964	0.0022236	3.8359	0.0020822	542.8260636034571	23.17	0.40549	23.17	22.991	23.397	0					14	7	3	0	0	0	0.48324	1	296	296		44.117	1.2525	1	239010	+		60365	17856	49798	49843	66154	66154					0.09504593201927491
VKHVKTHFK	9	Unmodified	_VKHVKTHFK_					0	0	0		tr|A0A7D6ZFM3|A0A7D6ZFM3_9CLOTcarbonicanhydraseOS=ClostridiumintestinaleOX=36845GN=HZF06_15575PE=3SV=1	tr|A0A7D6ZFM3|A0A7D6ZFM3_9CLOTcarbonicanhydraseOS=ClostridiumintestinaleOX=36845GN=HZF06_15575PE=3SV=1	tr|A0A7D6ZFM3|A0A7D6ZFM3_9CLOTcarbonicanhydraseOS=ClostridiumintestinaleOX=36845GN=HZF06_15575PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3434448242188	2	562.340375	1122.6662	1.2434	0.00069921	4.1981	0.0023608	5.4415	0.00306	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.68424	1	13994	13994		21.96	4.5949	1	683710			60366	35516	49799	49844	66155	66155					0.10977123596421734
VKIDKEEFKL	10	Unmodified	_VKIDKEEFKL_					0	0	0		tr|A0A553STF5|A0A553STF5_NIACIHelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04905PE=3SV=1	tr|A0A553STF5|A0A553STF5_NIACIHelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04905PE=3SV=1	tr|A0A553STF5|A0A553STF5_NIACIHelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04905PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	624.86767578125	2	624.863546	1247.71254	0.056052	3.5025E-05	2.1029	0.001314	2.1589	0.001349	624.8647443003554	83.515	1.3803	80.852	80.534	81.914	-2.6629					68	28	4	0	0	0	0.55939	1	6947	6947		42.338	10.704	1	527020			60367	34482	49800	49845	66156	66156					0.0985909891717256
VKIDKEEFKL	10	Unmodified	_VKIDKEEFKL_					0	0	0		tr|A0A553STF5|A0A553STF5_NIACIHelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04905PE=3SV=1	tr|A0A553STF5|A0A553STF5_NIACIHelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04905PE=3SV=1	tr|A0A553STF5|A0A553STF5_NIACIHelix-turn-helixdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04905PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	624.863546	1247.71254	-0.25492	-0.00015929	2.6008	0.0016251	2.3459	0.0014658	624.8651416313201	83.4	1.5912	81.139	80.765	82.356	-2.2616	0.14354	0.0002297	NaN	42.338	86	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	714650			60368	34482	49800	49845							0.0985909891717256
VKIFSQSQD	9	Unmodified	_VKIFSQSQD_					0	0	0		tr|A0A7D6VSU2|A0A7D6VSU2_9CLOTDUF2207domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00300PE=4SV=1	tr|A0A7D6VSU2|A0A7D6VSU2_9CLOTDUF2207domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00300PE=4SV=1	tr|A0A7D6VSU2|A0A7D6VSU2_9CLOTDUF2207domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00300PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	526.2688598632812	2	526.274564	1050.53457	0.48606	0.0002558	-2.9419	-0.0015483	-2.4558	-0.0012925	526.2726202383727	105.65	0.74136	105.65	105.4	106.14	0					21	11	3	0	0	0	0.14998	1	11863	11863		84.916	7.5979	1	1682800			60369	35058	49801	49846	66157	66157					0.011328487180207958
VKIGKKRIR	9	Unmodified	_VKIGKKRIR_					0	0	0			REV__tr|A0A7D6VRK0|A0A7D6VRK0_9CLOTRibulose-phosphate3-epimeraseOS=ClostridiumintestinaleOX=36845GN=HZF06_02455PE=4SV=1	REV__tr|A0A7D6VRK0|A0A7D6VRK0_9CLOTRibulose-phosphate3-epimeraseOS=ClostridiumintestinaleOX=36845GN=HZF06_02455PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.3353881835938	2	549.385117	1096.75568	-0.14535	-7.9851E-05	2.4415	0.0013413	2.2962	0.0012615	549.3861548044823	31.077	0.19365	31.077	30.93	31.124	0					6	3	2	0	0	0	0.027462	1	1234	1234		11.511	0	1	11410	+		60370	31423	49802	49847	66158	66158					0.21117378275766896
VKIINLKPL	9	Unmodified	_VKIINLKPL_					0	0	0			REV__ENSG00000155962|ENST00000369449|CLIC2	REV__ENSG00000155962|ENST00000369449|CLIC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.3211059570312	2	519.357702	1036.70085	-1.7203	-0.00089347	0.5852	0.00030393	-1.1351	-0.00058954	519.3559315692614	107.16	0.26357	105.28	105.07	105.33	-1.8785					7	4	2	0	0	0	0.027462	1	9770	9770		31.955	6.5047	1	7307.3	+		60371	20451	49803	49848	66159	66159					0.18396946684492832
VKIISVITEGY	11	Unmodified	_VKIISVITEGY_					0	0	0		tr|A0A7D6VQA7|A0A7D6VQA7_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22455PE=3SV=1	tr|A0A7D6VQA7|A0A7D6VQA7_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22455PE=3SV=1	tr|A0A7D6VQA7|A0A7D6VQA7_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22455PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3556518554688	2	611.358096	1220.70164	-3.1571	-0.0019301	-0.12375	-7.5658E-05	-3.2809	-0.0020058	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.69455	1	12708	12708		31.53	3.6476	1	666990			60372	34834	49804	49849	66160	66160					0.1001169654291516
VKIIYKNTP	9	Unmodified	_VKIIYKNTP_					0	0	0		ENSG00000147592|ENST00000276590|LACTB2	ENSG00000147592|ENST00000276590|LACTB2	ENSG00000147592|ENST00000276590|LACTB2	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.330078125	2	538.329142	1074.64373	-6.8958	-0.0037122	3.0059	0.0016182	-3.8899	-0.002094	538.3306472316852	159.34	1.4158	157.75	157.44	158.85	-1.5859					96	33	4	0	0	0	0.69403	1	15789	15789		19.997	0.6368	1	453340			60373	5364	49805	49850	66161	66161					0.10939479408125408
VKILHVNNLD	10	Unmodified	_VKILHVNNLD_					0	0	0			REV__tr|A0A7D6ZT77|A0A7D6ZT77_9CLOTMetalABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19035PE=4SV=1	REV__tr|A0A7D6ZT77|A0A7D6ZT77_9CLOTMetalABCtransportersubstrate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19035PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	582.8392944335938	2	582.840405	1163.66626	-3.0911	-0.0018016	-2.6859	-0.0015655	-5.777	-0.0033671	582.8383087821258	126.11	0.92725	124.7	124.39	125.32	-1.4143					45	18	4	0	0	0	0.66721	1	11984	11984		34.173	5.023	1	52224	+		60374	32201	49806	49851	66162	66162					0.09097078805734782
VKILIWKWK	9	Unmodified	_VKILIWKWK_					0	0	0			REV__Tigger2_dup43|chr1:52036089-52037207:-|1.0572414785124398|0.4218533099472232|1.33|428.0|77|3|anti-sense	REV__Tigger2_dup43|chr1:52036089-52037207:-|1.0572414785124398|0.4218533099472232|1.33|428.0|77|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	405.5530090332031	3	405.265505	1212.77469	0.84227	0.00034134	4.3183	0.00175	5.1605	0.0020914	405.26711801244426	47.005	1.1391	44.295	44.043	45.182	-2.7097					52	22	4	0	0	0	0.027462	1	2911	2911		23.523	8.7439	1	87190	+		60375	29502	49807	49852	66163	66163					0.17680914846823725
VKILVFKM	8	Unmodified	_VKILVFKM_					0	0	0		ENST00000468309.1_1_10:21957921-21959695:+|nuORF	ENST00000468309.1_1_10:21957921-21959695:+|nuORF	ENST00000468309.1_1_10:21957921-21959695:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	489.31365966796875	2	489.314449	976.614345	-2.9034	-0.0014207	2.5319	0.0012389	-0.37155	-0.00018181	489.3155696010777	150.8	1.5265	150.57	150.17	151.7	-0.22696					77	30	4	0	0	0	0.74971	1	15330	15330		26.796	6.3143	1	380370			60376	12326	49808	49853	66164	66164					0.1251024385828714
VKIPIIGVGGV	11	Unmodified	_VKIPIIGVGGV_					0	0	0		tr|A0A7D7A4K7|A0A7D7A4K7_9CLOTDihydroorotatedehydrogenaseB(NAD(+)),catalyticsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_02215PE=3SV=1	tr|A0A7D7A4K7|A0A7D7A4K7_9CLOTDihydroorotatedehydrogenaseB(NAD(+)),catalyticsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_02215PE=3SV=1	tr|A0A7D7A4K7|A0A7D7A4K7_9CLOTDihydroorotatedehydrogenaseB(NAD(+)),catalyticsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_02215PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.2921142578125	2	526.347335	1050.68012	-1.4482	-0.00076224	-0.15359	-8.0841E-05	-1.6018	-0.00084308	526.3470390199549	100.85	0.61457	99.242	99.094	99.708	-1.6053					17	11	2	0	0	0	0.026099	1	6907	6907		19.997	12.803	1	32610			60377	36147	49809	49854	66165	66165					0.1568035630484701
VKIRGIIP	8	Unmodified	_VKIRGIIP_					0	0	0		ENSG00000078142|ENST00000262039|PIK3C3	ENSG00000078142|ENST00000262039|PIK3C3	ENSG00000078142|ENST00000262039|PIK3C3	MULTI-MSMS	OvCa99_classI_Rep5	1	448.3092956542969	2	448.308013	894.601472	2.6557	0.0011906	-0.20708	-9.2836E-05	2.4486	0.0010977	448.3077722296738	78.305	0.78253	78.305	77.968	78.75	0					40	18	3	0	0	0	0.65582	1	7928	7928		52.299	7.7681	1	1238400			60378	1588	49810	49855	66166	66166					0.14995548790420798
VKISFEDEP	9	Unmodified	_VKISFEDEP_					0	0	0		nc|ENSG00000033867|Q9Y6M7-4|SLC4A7;nc|ENSG00000033867|Q9Y6M7-2|SLC4A7;nc|ENSG00000033867|Q9Y6M7-9|SLC4A7;nc|ENSG00000033867|Q9Y6M7-6|SLC4A7;nc|ENSG00000033867|Q9Y6M7-13|SLC4A7;nc|ENSG00000033867|Q9Y6M7-12|SLC4A7;nc|ENSG00000033867|Q9Y6M7|SLC4A7;nc|ENSG00000033867|Q9Y6M7-8|SLC4A7;ENSG00000033867|ENST00000454389|SLC4A7;nc|ENSG00000033867|Q9Y6M7-5|SLC4A7;ENST00000465487.5_1_3:27418257-27433320:-|nuORF	nc|ENSG00000033867|Q9Y6M7-4|SLC4A7	nc|ENSG00000033867|Q9Y6M7-4|SLC4A7	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.291748046875	2	532.268947	1062.52334	3.5197	0.0018734	3.2188	0.0017133	6.7385	0.0035867	532.2705906540973	88.124	0.62973	88.124	87.921	88.551	0					24	14	2	0	0	0	0.027447	1	9340	9340		39.253	5.0803	1	1375300			60379	1077	49811	49856	66167	66167					-0.005419733761300449
VKISKVKYV	9	Unmodified	_VKISKVKYV_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA;COPA|p.H613Tfs*3|1|0.05|ENSG00000122218|chr1:160298986-160298986|C/-|frameshift_variant;ENST00000481522.1_1_1:160275221-160275586:-|nuORF	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.3466796875	2	532.347335	1062.68012	0.65024	0.00034615	-0.6405	-0.00034097	0.0097436	5.187E-06	532.3468678674839	138.42	1.5747	136.89	136.6	138.17	-1.5284					45	32	2	0	0	0	0.64427	1	13488	13488		26.693	2.4902	1	47987			60380	3523	49812	49857	66168	66168					0.1512835630483096
VKITYGLKEG	10	Unmodified	_VKITYGLKEG_					0	0	0			REV__tr|A0A553SKZ2|A0A553SKZ2_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_19625PE=3SV=1	REV__tr|A0A553SKZ2|A0A553SKZ2_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_19625PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.8016357421875	2	554.324057	1106.63356	-0.30962	-0.00017163	0.39832	0.0002208	0.088696	4.9166E-05	554.3243029366141	121.13	0.76187	119.78	119.44	120.21	-1.3479					24	14	2	0	0	0	0.026659	1	11453	11453		45.972	18.09	1	43165	+		60381	30170	49813	49858	66169	66169					0.08450871682885008
VKITYGLKEG	10	Unmodified	_VKITYGLKEG_					0	0	0			REV__tr|A0A553SKZ2|A0A553SKZ2_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_19625PE=3SV=1	REV__tr|A0A553SKZ2|A0A553SKZ2_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_19625PE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	554.324057	1106.63356	1.7362	0.00096242	0.01027	5.6928E-06	1.7465	0.00096811	554.3238399811278	119.92	0.56779	119.92	119.62	120.18	0	0.072356	-0.00034319	NaN	45.972	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	341060	+		60382	30170	49813	49858							0.08450871682885008
VKITYGLKEG	10	Unmodified	_VKITYGLKEG_					0	0	0			REV__tr|A0A553SKZ2|A0A553SKZ2_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_19625PE=3SV=1	REV__tr|A0A553SKZ2|A0A553SKZ2_NIACIABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_19625PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	554.324057	1106.63356	-0.62594	-0.00034698	0.56329	0.00031224	-0.062654	-3.4731E-05	554.3241997138385	120.02	0.98741	119.85	119.59	120.58	-0.17138	-0.0030822	0.00026992	NaN	45.972	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39221	+		60383	30170	49813	49858							0.08450871682885008
VKIVKIHPL	9	Unmodified	_VKIVKIHPL_					0	0	0		ENSG00000009954|ENST00000339594|BAZ1B;nc|ENSG00000009954|Q9UIG0-2|BAZ1B;BAZ1B|p.K150Dfs*13|1|0.06|ENSG00000009954|chr7:73498620-73498621|-/TCACAACTGTCTCCTTCTTCTGATGGTC|frameshift_variant	ENSG00000009954|ENST00000339594|BAZ1B	ENSG00000009954|ENST00000339594|BAZ1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.8410034179688	2	523.85787	1045.70119	2.4394	0.0012779	0.00717	3.756E-06	2.4465	0.0012816	523.8582394118307	99.175	0.51662	99.175	98.801	99.318	0					18	12	3	0	0	0	0.027326	1	10972	10972		88.643	0	1	589440			60384	935	49814	49859	66170	66170					0.18016366404367545
VKIVRVKIEK	10	Unmodified	_VKIVRVKIEK_					0	0	0			REV__ENST00000518409.1_1_5:133640182-133644414:-|nuORF	REV__ENST00000518409.1_1_5:133640182-133644414:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.5569763183594	3	404.611452	1210.81253	0.52591	0.00021279	3.8968	0.0015767	4.4227	0.0017895	404.61248526567766	42.178	0.1751	42.178	42.024	42.199	0					5	3	2	0	0	0	0.027207	1	2692	2692		24.232	2.5461	1	15874	+		60385	15774	49815	49860	66171	66171					0.21555381041662258
VKKAGAKK	8	Unmodified	_VKKAGAKK_					0	0	0			REV__tr|A0A553SNP7|A0A553SNP7_NIACIGMCfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_24960PE=3SV=1	REV__tr|A0A553SNP7|A0A553SNP7_NIACIGMCfamilyoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_24960PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	415.2132263183594	2	415.284537	828.554522	-0.93858	-0.00038978	1.068	0.00044354	0.12947	5.3765E-05	415.2848351903198	43.632	1.0148	40.624	40.378	41.393	-3.0074					38	19	3	0	0	0	0.028476	1	2119	2119		35.201	27.51	1	90130	+		60386	30437	49816	49861	66172	66172					0.1333868923927639
VKKAKKLI	8	Unmodified	_VKKAKKLI_					0	0	0			REV__ENSG00000178409|ENST00000369042|BEND3	REV__ENSG00000178409|ENST00000369042|BEND3	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.28021240234375	2	464.339313	926.664072	1.2191	0.00056609	-1.357	-0.00063012	-0.1379	-6.4031E-05	464.3379339656539	81.608	0.32243	81.608	81.413	81.736	0					11	7	2	0	0	0	0.028476	1	8410	8410		20.482	6.7065	1	241140	+		60387	22058	49817	49862	66173	66173					0.19780694858604875
VKKANIPSN	9	Unmodified	_VKKANIPSN_					0	0	0			REV__ENSG00000075539|ENST00000358350|FRYL	REV__ENSG00000075539|ENST00000358350|FRYL	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.78765869140625	2	485.787641	969.56073	0.75456	0.00036655	-2.2769	-0.0011061	-1.5224	-0.00073956	485.78635313915237	86.758	1.3398	84.132	83.613	84.952	-2.6269					47	26	3	0	0	0	0.22961	1	7359	7359		71.296	0	1	380410	+		60388	16974	49818	49863	66174	66174					0.07473162680139467
VKKANIPSN	9	Unmodified	_VKKANIPSN_					0	0	0			REV__ENSG00000075539|ENST00000358350|FRYL	REV__ENSG00000075539|ENST00000358350|FRYL	MULTI-MATCH	OvCa9_classI_Rep2	2		2	485.787641	969.56073	-1.3005	-0.00063178	1.9073	0.00092653	0.60675	0.00029475	485.78765789375285	85.628	1.7433	84.137	83.159	84.903	-1.4906	0.038589	0.0015976	NaN	71.296	78	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	156500	+		60389	16974	49818	49863							0.07473162680139467
VKKANIPSN	9	Unmodified	_VKKANIPSN_					0	0	0			REV__ENSG00000075539|ENST00000358350|FRYL	REV__ENSG00000075539|ENST00000358350|FRYL	MULTI-MATCH	OvCa9_classI_Rep3	3		2	485.787641	969.56073	-1.5639	-0.0007597	1.4522	0.00070548	-0.11161	-5.4216E-05	485.78806322020455	86.247	1.5555	84.027	83.386	84.941	-2.2204	-0.071698	0.0011555	NaN	71.296	59	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	423430	+		60390	16974	49818	49863							0.07473162680139467
VKKANIPSN	9	Unmodified	_VKKANIPSN_					0	0	0			REV__ENSG00000075539|ENST00000358350|FRYL	REV__ENSG00000075539|ENST00000358350|FRYL	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	485.787641	969.56073	0.75456	0.00036655	-2.2769	-0.0011061	-1.5224	-0.00073956	485.78635313915237	86.758	1.3398	84.132	83.613	84.952	-2.6269	0.033109	-0.0024677	NaN	71.296	47	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	380410	+		60391	16974	49818	49863							0.07473162680139467
VKKATKKT	8	Unmodified	_VKKATKKT_					0	0	0			REV__ENST00000544421.1_1_11:60674414-60674495:+|nuORF	REV__ENST00000544421.1_1_11:60674414-60674495:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.28411865234375	2	452.302927	902.591301	0.86226	0.00039	1.3703	0.00061981	2.2326	0.0010098	452.30335501144754	47.565	0.34541	44.458	44.287	44.632	-3.1077					8	6	2	0	0	0	0.028476	1	2569	2569		16.473	0	1	16205	+		60392	27395	49819	49864	66175	66175					0.13610941065178395
VKKCKKSK	8	Unmodified	_VKKCKKSK_					0	0	0			REV__nc|ENSG00000107485|P23771|GATA3	REV__nc|ENSG00000107485|P23771|GATA3	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.79718017578125	2	474.80478	947.595007	1.2106	0.0005748	1.0952	0.00051999	2.3058	0.0010948	474.8051704440205	155.05	1.5209	155.05	154.52	156.04	0					47	29	2	0	0	0	0.028476	1	18197	18197		6.7355	5.5304	1	56467	+		60393	17846	49820	49865	66176	66176					0.11911287567386353
VKKEAEKR	8	Unmodified	_VKKEAEKR_					0	0	0		ENSG00000138785|ENST00000340139|INTS12	ENSG00000138785|ENST00000340139|INTS12	ENSG00000138785|ENST00000340139|INTS12	MULTI-MSMS	OvCa9_classI_Rep3	3	494.3006896972656	2	494.300916	986.587279	1.1771	0.00058186	2.3792	0.0011761	3.5564	0.0017579	494.3019240355176	126.28	1.1552	125.2	124.86	126.02	-1.0715					43	21	3	0	0	0	0.745	1	9876	9876		29.15	2.3535	1	106780			60394	4731	49821	49866	66177	66177					0.09344851571472645
VKKEKGFMKM	10	Unmodified	_VKKEKGFMKM_					0	0	0			REV__tr|A0A7D6W3P5|A0A7D6W3P5_9CLOTPolyribonucleotidenucleotidyltransferaseOS=ClostridiumintestinaleOX=36845GN=pnpPE=3SV=1	REV__tr|A0A7D6W3P5|A0A7D6W3P5_9CLOTPolyribonucleotidenucleotidyltransferaseOS=ClostridiumintestinaleOX=36845GN=pnpPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	613.3464965820312	2	613.343412	1224.67227	1.3203	0.00080977	-0.35544	-0.000218	0.96483	0.00059177	613.3436121753967	145.05	0.53041	145.05	144.79	145.32	0					22	10	3	0	0	0	0.48198	1	16966	16966		56.721	9.0637	1	127520	+		60395	31920	49822	49867	66178	66178					0.0689213772138828
VKKELLASMA	10	Unmodified	_VKKELLASMA_					0	0	0			REV__ENST00000587990.1_1_17:76061005-76071362:+|nuORF	REV__ENST00000587990.1_1_17:76061005-76071362:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	545.3162841796875	2	545.32046	1088.62637	-2.8527	-0.0015556	-4.0579	-0.0022129	-6.9106	-0.0037685	545.3180675646769	142.32	5.7928	141.31	139.8	145.59	-1.0106					333	116	5	0	0	0	0.69073	1	11834	11834		31.53	5.9558	1	337600	+		60396	17028	49823	49868	66179	66179					0.08559815810826876
VKKEMRQK	8	Oxidation (M)	_VKKEM(Oxidation (M))RQK_		VKKEM(1)RQK		VKKEM(120)RQK	0	0	1			REV__ENST00000382162.7_1_22:31904270-32000328:+|nuORF	REV__ENST00000382162.7_1_22:31904270-32000328:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8062744140625	2	531.808051	1061.60155	-1.8902	-0.0010052	-2.0642	-0.0010978	-3.9544	-0.002103	531.806891935509	41.675	2.0149	38.695	38.023	40.037	-2.9804					85	38	5	0	0	0	0.25402	1	1880	1880		115.46	22.264	1	829150	+		60397	22986	49824	49869	66180	66180		535			0.07321180728081345
VKKFGAQNV	9	Unmodified	_VKKFGAQNV_					0	0	0		ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	MULTI-SECPEP	OvCa9_classI_Rep2	2	496.7612609863281	2	495.790184	989.565815	0.18112	8.9796E-05	-1.408	-0.00069808	-1.2269	-0.00060828	495.78991318883914	72.721	1.4637	70.321	69.959	71.422	-2.3999					50	27	4	0	0	0	0.027417	1	5901	5901		45.952	0	1	49579			60398	6722	49825	49870	66181	66181					0.0706146654274562
VKKFGAQNV	9	Unmodified	_VKKFGAQNV_					0	0	0		ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	ENSG00000166848|ENST00000300086|TERF2IP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.7627258300781	2	495.790184	989.565815	-0.64543	-0.00032	0.18373	9.1092E-05	-0.4617	-0.00022891	495.79029215157806	73.883	1.1447	70.652	70.095	71.24	-3.2308					29	23	2	0	0	0	0.027417	1	5779	5779		45.952	0	1	92473			60399	6722	49825	49870	66182	66182					0.0706146654274562
VKKGFERA	8	Unmodified	_VKKGFERA_					0	0	0			REV__ENSG00000144821|ENST00000693548|MYH15	REV__ENSG00000144821|ENST00000693548|MYH15	MULTI-MSMS	OvCa99_classI_Rep5	1	467.77728271484375	2	467.777077	933.5396	-0.52355	-0.00024491	0.51473	0.00024078	-0.0088251	-4.1282E-06	467.7770841520459	39.568	0.63897	39.568	39.332	39.971	0					24	14	2	0	0	0	0.59148	1	2333	2333		65.803	2.8247	1	912480	+		60400	19936	49826	49871	66183	66183					0.07017197371271777
VKKGGPRS	8	Unmodified	_VKKGGPRS_					0	0	0			REV__ENST00000548278.1_2_12:113623609-113623997:+|nuORF	REV__ENST00000548278.1_2_12:113623609-113623997:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	415.2133483886719	2	414.756144	827.497735	-0.85636	-0.00035518	1.2948	0.00053703	0.43846	0.00018185	414.75674738631153	43.691	0.50584	40.684	40.483	40.989	-3.0074					13	9	2	0	0	0	0.028476	1	2132	2132		30.504	3.7075	1	18657	+		60401	27441	49827	49872	66184	66184					0.07708641682745565
VKKHGGVK	8	Unmodified	_VKKHGGVK_					0	0	0			REV__FARP1|p.E353V|1|0.14|ENSG00000152767|chr13:98390850-98390850|A/T|missense_variant	REV__FARP1|p.E353V|1|0.14|ENSG00000152767|chr13:98390850-98390850|A/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	426.7749938964844	2	426.774337	851.534121	0.36169	0.00015436	0.95401	0.00040715	1.3157	0.00056151	426.7742314650023	20.25	0.23856	20.25	20.114	20.352	0					11	8	2	0	0	0	0.73626	1	14	14		33.516	13.034	1	20827	+		60402	28128	49828	49873	66185	66185					0.10241518579471176
VKKHSVYW	8	Unmodified	_VKKHSVYW_					0	0	0		ENST00000506915.1_1_4:190394709-190394793:+|nuORF	ENST00000506915.1_1_4:190394709-190394793:+|nuORF	ENST00000506915.1_1_4:190394709-190394793:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	524.2761840820312	2	523.792727	1045.5709	0.95821	0.00050191	2.855	0.0014954	3.8132	0.0019973	523.7931699600467	41.517	0.14788	38.807	38.684	38.832	-2.7097					4	2	2	0	0	0	0.028476	1	2171	2171		12.207	0.69583	1	10644			60403	12919	49829	49874	66186	66186					0.049937704053718335
VKKIQHLHY	9	Unmodified	_VKKIQHLHY_					0	0	0			REV__ENST00000509031.5_1_4:106290877-106307731:-|nuORF	REV__ENST00000509031.5_1_4:106290877-106307731:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	584.0072021484375	2	583.345658	1164.67676	0.12937	7.5468E-05	1.0383	0.0006057	1.1677	0.00068117	583.8472117213001	35.734	0.44944	32.885	32.64	33.09	-2.849					13	8	2	0	0	0	0.027462	1	1181	1181		40.573	10.069	1	11208	+		60404	26920	49830	49875	66187	66187					0.1010110625084053
VKKKLVECK	9	Unmodified	_VKKKLVECK_					0	0	0			REV__ENST00000496886.1_1_2:74213725-74220404:+|nuORF	REV__ENST00000496886.1_1_2:74213725-74220404:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.271240234375	2	537.83882	1073.66309	2.8173	0.0015152	-3.7564	-0.0020203	-0.93912	-0.0005051	537.8365945909826	90.164	0.44401	90.164	89.977	90.421	0					22	10	3	0	0	0	0.027462	1	9644	9644		26.693	0	1	572340	+		60405	22650	49831	49876	66188	66188					0.12920112427377717
VKKKRIFTPL	10	Unmodified	_VKKKRIFTPL_					0	0	0		tr|A0A553SGV6|A0A553SGV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_11665PE=4SV=1	tr|A0A553SGV6|A0A553SGV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_11665PE=4SV=1	tr|A0A553SGV6|A0A553SGV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_11665PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	614.7800903320312	2	615.408258	1228.80196	1.2947	0.00079679	-0.69676	-0.00042879	0.59797	0.00036799	615.4080721490085	124.75	0.60248	124.75	124.42	125.02	0					23	12	3	0	0	0	0.027021	1	14427	14427		21.96	0	1	103550			60406	33200	49832	49877	66189	66189					0.19671398387208683
VKKKRKANF	9	Unmodified	_VKKKRKANF_					0	0	0			REV__ENSG00000125875|ENST00000354200|TBC1D20	REV__ENSG00000125875|ENST00000354200|TBC1D20	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.2683715820312	2	559.861475	1117.7084	-0.45686	-0.00025578	-0.33127	-0.00018547	-0.78813	-0.00044125	559.8612839685248	36.939	0.45238	36.939	36.707	37.159	0					17	9	2	0	0	0	0.027462	1	1970	1970		23.042	8.1776	1	105970	+		60407	18754	49833	49878	66190	66190					0.1542509900477853
VKKKSNSI	8	Unmodified	_VKKKSNSI_					0	0	0		LRRK2|p.R1462Qfs*6|1|0.1|ENSG00000188906|chr12:40310497-40310498|CG/-|frameshift_variant;ENSG00000188906|ENST00000298910|LRRK2	LRRK2|p.R1462Qfs*6|1|0.1|ENSG00000188906|chr12:40310497-40310498|CG/-|frameshift_variant	LRRK2|p.R1462Qfs*6|1|0.1|ENSG00000188906|chr12:40310497-40310498|CG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	452.2843322753906	2	452.284734	902.554916	1.4891	0.00067351	-2.0239	-0.00091536	-0.53473	-0.00024185	452.2836299597544	47.138	2.5308	44.428	43.993	46.524	-2.7097					129	50	4	0	0	0	0.70469	1	2879	2879		42.396	0	1	825520			60408	8515	49834	49879	66191	66191					0.09974064168454788
VKKKSNSI	8	Unmodified	_VKKKSNSI_					0	0	0		LRRK2|p.R1462Qfs*6|1|0.1|ENSG00000188906|chr12:40310497-40310498|CG/-|frameshift_variant;ENSG00000188906|ENST00000298910|LRRK2	LRRK2|p.R1462Qfs*6|1|0.1|ENSG00000188906|chr12:40310497-40310498|CG/-|frameshift_variant	LRRK2|p.R1462Qfs*6|1|0.1|ENSG00000188906|chr12:40310497-40310498|CG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	452.2847900390625	2	452.284734	902.554916	0.79908	0.00036141	-2.9996	-0.0013567	-2.2005	-0.00099525	452.2831496497707	47.481	2.9264	44.373	44.082	47.008	-3.1077					143	56	4	0	0	0	0.68704	1	2593	2593		45.972	0.020292	1	3311000			60409	8515	49834	49879	66192	66192					0.09974064168454788
VKKLEKHINQ	10	Unmodified	_VKKLEKHINQ_					0	0	0		nc|ENSG00000145476|Q6ZWL3-2|CYP4V2;ENSG00000145476|ENST00000378802|CYP4V2;ENST00000507209.5_1_4:187117965-187118319:+|nuORF	nc|ENSG00000145476|Q6ZWL3-2|CYP4V2;ENST00000507209.5_1_4:187117965-187118319:+|nuORF	nc|ENSG00000145476|Q6ZWL3-2|CYP4V2	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.70391845703125	3	412.918945	1235.73501	0.61616	0.00025442	-0.10157	-4.194E-05	0.51459	0.00021248	412.9186336541264	33.423	0.19795	33.423	33.285	33.483	0					6	3	2	0	0	0	0.026949	1	1519	1519		42.338	14.694	1	19394			60410	5226;12923	49835	49880	66193	66193					0.1265674310545819
VKKLHFSGRK	10	Unmodified	_VKKLHFSGRK_					0	0	0			REV__nc|ENSG00000152409|Q8N9B5-2|JMY	REV__nc|ENSG00000152409|Q8N9B5-2|JMY	MULTI-MSMS	OvCa9_classI_Rep2	2	400.58734130859375	3	400.583897	1198.72986	4.6344	0.0018565	3.7415	0.0014988	8.3759	0.0033553	400.58524212682823	26.421	0.50592	23.711	23.567	24.073	-2.7097					20	12	2	0	0	0	0.80369	1	371	371		18.531	2.5243	1	24033	+		60411	20282	49836	49881	66194	66194					0.13844484033506887
VKKLHRER	8	Unmodified	_VKKLHRER_					0	0	0			REV__ENST00000471231.6_1_16:30937150-30941463:+|nuORF	REV__ENST00000471231.6_1_16:30937150-30941463:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.318359375	2	533.335624	1064.6567	-2.0825	-0.0011107	3.2529	0.0017349	1.1704	0.0006242	533.3369277802555	54.386	0.29838	51.572	51.424	51.722	-2.8139					9	5	2	0	0	0	0.028476	1	3747	3747		10.866	0	1	6858.6	+		60412	17324	49837	49882	66195	66195					0.1269535531089332
VKKLLIMKV	9	Unmodified	_VKKLLIMKV_					0	0	0			REV__ENST00000346348.7_1_6:86243499-86246529:-|nuORF	REV__ENST00000346348.7_1_6:86243499-86246529:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3421020507812	2	536.369756	1070.72496	-0.57957	-0.00031086	2.6559	0.0014246	2.0764	0.0011137	536.3708312927835	39.56	0.56693	39.56	39.063	39.63	0					22	12	4	0	0	0	0.027462	1	2344	2344		29.15	4.9468	1	663050	+		60413	24698	49838	49883	66196	66196					0.19242463846512692
VKKLNKLIE	9	Unmodified	_VKKLNKLIE_					0	0	0		ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	ENSG00000102580|ENST00000602402|DNAJC3	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.796630859375	2	542.858067	1083.70158	1.0236	0.00055565	4.1524	0.0022542	5.176	0.0028098	542.8603001608421	156.13	1.059	156.13	155.84	156.9	0					27	20	2	0	0	0	0.027462	1	18379	18379		16.473	0.83134	1	40148			60414	2245	49839	49884	66197	66197					0.1630774133354862
VKKMLEARIQ	10	Unmodified	_VKKMLEARIQ_					0	0	0			REV__ENSG00000239810|ENST00000619922|PRAMEF11	REV__ENSG00000239810|ENST00000619922|PRAMEF11	MULTI-SECPEP	OvCa99_classI_Rep5	1	405.931640625	3	405.912914	1214.71691	0.011827	4.8008E-06	2.2964	0.00093214	2.3082	0.00093694	406.2476629526123	43.736	0.1721	43.736	43.608	43.78	0					5	3	2	0	0	0	0.027088	1	2903	2903		9.6461	0	1	12162	+		60415	23433	49840	49885	66198	66198					0.1181428485908782
VKKNRLTYI	9	Unmodified	_VKKNRLTYI_					0	0	0			REV__ENSG00000237988|ENST00000641137|OR2I1P	REV__ENSG00000237988|ENST00000641137|OR2I1P	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.8306884765625	2	567.853316	1133.69208	1.4702	0.00083484	-1.3603	-0.00077247	0.10984	6.2375E-05	568.3544525415105	149.63	0.43355	149.63	149.36	149.79	0					10	8	2	0	0	0	0.027462	1	17534	17534		24.203	0	1	14045	+		60416	23425	49841	49886	66199	66199					0.13057973048012173
VKKNVRQL	8	Unmodified	_VKKNVRQL_					0	0	0			REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	REV__nc|ENSG00000132972|Q9BXT8-4|RNF17	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.8188781738281	2	492.819276	983.623999	-0.15633	-7.7044E-05	-0.23118	-0.00011393	-0.38752	-0.00019098	492.8190082291614	62.974	3.1431	59.501	59.195	62.338	-3.4731					139	64	4	0	0	0	0.65582	1	4390	4390		52.299	0	1	1132000	+		60417	19117	49842	49887	66200	66200					0.13153148188030173
VKKPKSSTL	9	Unmodified	_VKKPKSSTL_					0	0	0		ENSG00000173705|ENST00000309558|SUSD5	ENSG00000173705|ENST00000309558|SUSD5	ENSG00000173705|ENST00000309558|SUSD5	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.7868957519531	2	494.313492	986.612431	0.47032	0.00023249	-0.98836	-0.00048856	-0.51804	-0.00025607	494.31289624355475	97.133	0.88694	96.174	95.873	96.76	-0.95856					32	17	2	0	0	0	0.027462	1	8749	8749		31.53	0	1	70220			60418	7406	49843	49888	66201	66201					0.11858906374038725
VKKRGVPRDP	10	Unmodified	_VKKRGVPRDP_					0	0	0			REV__tr|A0A553SP50|A0A553SP50_NIACIMethionyl-tRNAformyltransferaseOS=NialliacirculansOX=1397GN=fmtPE=3SV=1	REV__tr|A0A553SP50|A0A553SP50_NIACIMethionyl-tRNAformyltransferaseOS=NialliacirculansOX=1397GN=fmtPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	576.3536987304688	2	576.354014	1150.69348	-0.29031	-0.00016732	-0.5669	-0.00032673	-0.85721	-0.00049406	576.3537371528553	71.759	4.075	69.252	68.91	72.985	-2.5071					188	77	5	0	0	0	0.50999	1	5787	5787		52.937	1.744	1	5146300	+		60419	30492	49844	49889	66202	66202					0.12415607136813378
VKKRGVPRDP	10	Unmodified	_VKKRGVPRDP_					0	0	0			REV__tr|A0A553SP50|A0A553SP50_NIACIMethionyl-tRNAformyltransferaseOS=NialliacirculansOX=1397GN=fmtPE=3SV=1	REV__tr|A0A553SP50|A0A553SP50_NIACIMethionyl-tRNAformyltransferaseOS=NialliacirculansOX=1397GN=fmtPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	576.3535766601562	2	576.354014	1150.69348	-0.5103	-0.00029411	-0.49695	-0.00028642	-1.0073	-0.00058053	576.3538085628105	72.001	4.4609	69.399	69.081	73.542	-2.6023					248	89	5	0	0	0	0.47142	1	3452	3452		58.23	6.8945	1	7516400	+		60420	30492	49844	49889	66203	66203					0.12415607136813378
VKKSNTVK	8	Unmodified	_VKKSNTVK_					0	0	0			REV__tr|A0A7D6ZED3|A0A7D6ZED3_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13260PE=4SV=1	REV__tr|A0A7D6ZED3|A0A7D6ZED3_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13260PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	452.2837829589844	2	452.284734	902.554916	1.4891	0.00067351	-2.0239	-0.00091536	-0.53473	-0.00024185	452.2836299597544	47.138	2.5308	44.428	43.993	46.524	-2.7097					129	50	4	0	0	0	0.71267	1	2890	2890		40.778	6.6056	1	825520	+		60421	31944	49845	49890	66204	66204					0.09974064168454788
VKKSNTVK	8	Unmodified	_VKKSNTVK_					0	0	0			REV__tr|A0A7D6ZED3|A0A7D6ZED3_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13260PE=4SV=1	REV__tr|A0A7D6ZED3|A0A7D6ZED3_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13260PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	452.28411865234375	2	452.284734	902.554916	0.79908	0.00036141	-2.9996	-0.0013567	-2.2005	-0.00099525	452.2831496497707	47.481	2.9264	44.373	44.082	47.008	-3.1077					143	56	4	0	0	0	0.65062	2	2569	2569;2581		53.351	0	1	3311000	+		60422	31944	49845	49890	66205;66206	66205					0.09974064168454788
VKKTPLIEGNY	11	Unmodified	_VKKTPLIEGNY_					0	0	0			REV__tr|A0A7D6ZX12|A0A7D6ZX12_9CLOTSmallribosomalsubunitproteinuS3OS=ClostridiumintestinaleOX=36845GN=rpsCPE=3SV=1	REV__tr|A0A7D6ZX12|A0A7D6ZX12_9CLOTSmallribosomalsubunitproteinuS3OS=ClostridiumintestinaleOX=36845GN=rpsCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	631.3632202148438	2	631.36117	1260.70779	0.51322	0.00032403	0.37657	0.00023775	0.88979	0.00056178	631.3614756771998	109.66	1.2643	107.98	107.67	108.93	-1.6846					61	23	3	0	0	0	0.69099	1	10062	10062		32.751	1.2207	1	244860	+		60423	32310	49846	49891	66207	66207					0.08786214774454493
VKKTTQAVR	9	Unmodified	_VKKTTQAVR_					0	0	0			REV__ENSG00000106244|ENST00000350498|PDAP1	REV__ENSG00000106244|ENST00000350498|PDAP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	516.2959594726562	2	515.822015	1029.62948	0.67261	0.00034695	-0.80869	-0.00041714	-0.13607	-7.019E-05	515.8214911544	30.687	0.78774	27.977	27.804	28.592	-2.7097					34	15	3	0	0	0	0.027462	1	845	845		16.473	0	1	108550	+		60424	17782	49847	49892	66208	66208					0.11584826979833451
VKKVKKPET	9	Unmodified	_VKKVKKPET_					0	0	0		tr|A0A7D6ZK12|A0A7D6ZK12_9CLOTProteinRecAOS=ClostridiumintestinaleOX=36845GN=recAPE=3SV=1	tr|A0A7D6ZK12|A0A7D6ZK12_9CLOTProteinRecAOS=ClostridiumintestinaleOX=36845GN=recAPE=3SV=1	tr|A0A7D6ZK12|A0A7D6ZK12_9CLOTProteinRecAOS=ClostridiumintestinaleOX=36845GN=recAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8167114257812	2	528.842416	1055.67028	0.48155	0.00025467	-0.9633	-0.00050943	-0.48175	-0.00025477	528.84150759053	63.354	0.35506	63.354	63.179	63.534	0					13	8	2	0	0	0	0.027462	1	5701	5701		10.265	0	1	184090			60425	35655	49848	49893	66209	66209					0.14467168299461264
VKKVKRKVK	9	Unmodified	_VKKVKRKVK_					0	0	0		ENST00000371826.3_1_10:91066380-91066419:+|nuORF	ENST00000371826.3_1_10:91066380-91066419:+|nuORF	ENST00000371826.3_1_10:91066380-91066419:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.8787231445312	2	556.903143	1111.79173	-0.30223	-0.00016831	-0.1664	-9.2668E-05	-0.46863	-0.00026098	556.9026728996439	37.962	0.21816	37.962	37.806	38.024	0					5	4	2	0	0	0	0.027462	1	2107	2107		12.207	0	1	87000			60426	10967	49849	49894	66210	66210					0.2403083545264053
VKKVVNPLL	9	Unmodified	_VKKVVNPLL_					0	0	0		ENST00000441433.1_1_7:26961755-26962307:+|nuORF	ENST00000441433.1_1_7:26961755-26962307:+|nuORF	ENST00000441433.1_1_7:26961755-26962307:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.3409729003906	2	505.342052	1008.66955	2.4457	0.0012359	-3.7738	-0.0019071	-1.3281	-0.00067113	505.33994217432223	135.22	1.8729	133.68	133.11	134.99	-1.5437					124	33	5	0	0	0	0.44294	1	13170	13170		47.916	3.7988	1	1621800			60427	11929	49850	49895	66211	66211					0.16556373650416845
VKKYLSIKN	9	Unmodified	_VKKYLSIKN_					0	0	0			REV__ENSG00000131781|ENST00000254090|FMO5	REV__ENSG00000131781|ENST00000254090|FMO5	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.3162231445312	2	546.842416	1091.67028	1.7237	0.0009426	0.22392	0.00012245	1.9476	0.001065	546.8420183477427	87.278	0.24301	87.278	87.135	87.378	0					7	5	2	0	0	0	0.027426	1	9246	9246		47.657	10.498	1	159870	+		60428	19035	49851	49896	66212	66212					0.12811168299458586
VKLALIIKA	9	Unmodified	_VKLALIIKA_					0	0	0			REV__nc|ENSG00000118690|Q8NEN0-2|ARMC2	REV__nc|ENSG00000118690|Q8NEN0-2|ARMC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.7755432128906	2	484.846971	967.679388	2.9362	0.0014236	-1.1052	-0.00053585	1.831	0.00088773	484.8464970066806	89.628	0.4971	89.628	89.394	89.891	0					16	11	2	0	0	0	0.027462	1	9592	9592		23.042	12.777	1	147800	+		60429	18411	49852	49897	66213	66213					0.1942556165578253
VKLANNIDP	9	Unmodified	_VKLANNIDP_					0	0	0			REV__tr|A0A553SI96|A0A553SI96_NIACIATPsynthasesubunitbetaOS=NialliacirculansOX=1397GN=atpDPE=3SV=1	REV__tr|A0A553SI96|A0A553SI96_NIACIATPsynthasesubunitbetaOS=NialliacirculansOX=1397GN=atpDPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.20379638671875	2	492.279649	982.544745	1.9512	0.00096054	0.88125	0.00043382	2.8325	0.0013944	492.2801780670414	91.942	0.84329	91.942	91.542	92.385	0					26	19	2	0	0	0	0.027411	1	9877	9877		74.255	2.3776	1	371430	+		60430	29874	49853	49898	66214	66214					0.05277456443218398
VKLAQMAILL	10	Unmodified	_VKLAQMAILL_					0	0	0		ENSG00000013523|ENST00000251089|ANGEL1	ENSG00000013523|ENST00000251089|ANGEL1	ENSG00000013523|ENST00000251089|ANGEL1	MULTI-MSMS	OvCa99_classI_Rep5	1	550.3482666015625	2	550.34902	1098.68349	0.53002	0.00029169	-1.9824	-0.001091	-1.4524	-0.00079934	550.3478385445093	159.18	1.1164	159.18	158.94	160.06	0					51	22	3	0	0	0	0.58282	1	18653	18653		44.117	5.3107	1	290840			60431	988	49854	49899	66215	66215					0.1380928308719831
VKLCFPCLL	9	Unmodified	_VKLCFPCLL_					0	0	0			REV__nc|ENSG00000285253|Q6N043-4|ZNF280D	REV__nc|ENSG00000285253|Q6N043-4|ZNF280D	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.2846069335938	2	518.290117	1034.56568	-0.97757	-0.00050666	-4.4577	-0.0023104	-5.4353	-0.0028171	518.2880527822747	93.045	0.47633	91.083	90.652	91.128	-1.9617					13	9	2	0	0	0	0.027462	1	5882	5882		18.324	0	1	43149	+		60432	29205	49855	49900	66216	66216					0.0497800722687316
VKLEKLVSSL	10	Unmodified	_VKLEKLVSSL_					0	0	0		ENSG00000108733|ENST00000225873|PEX12	ENSG00000108733|ENST00000225873|PEX12	ENSG00000108733|ENST00000225873|PEX12	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.3438720703125	2	558.355357	1114.69616	2.0618	0.0011512	1.719	0.00095981	3.7808	0.002111	558.3564518670431	111.13	0.44304	111.13	110.85	111.29	0					12	9	2	0	0	0	0.026867	1	12604	12604		83.647	8.6037	1	109440			60433	2671	49856	49901	66217	66217					0.1434001775107845
VKLFLLLII	9	Unmodified	_VKLFLLLII_					0	0	0			REV__MER57A-int_dup1703|chr19:23112751-23113886:+|1.0685339057591443|0.266030358890427|2.01|427.0|66|2|anti-sense	REV__MER57A-int_dup1703|chr19:23112751-23113886:+|1.0685339057591443|0.266030358890427|2.01|427.0|66|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3411254882812	2	536.380646	1070.74674	-0.62192	-0.00033359	3.5194	0.0018878	2.8975	0.0015542	536.3830428542481	39.61	0.46357	39.61	39.376	39.84	0					22	10	4	0	0	0	0.027462	1	2369	2369		25.45	0.93098	1	765820	+		60434	28659	49857	49902	66218	66218					0.21419591866765586
VKLFVALGPI	10	Unmodified	_VKLFVALGPI_					0	0	0		ENSG00000138399|ENST00000453153|FASTKD1;nc|ENSG00000138399|Q53R41-2|FASTKD1;ENST00000487293.2_1_2:170416895-170419880:-|nuORF	ENSG00000138399|ENST00000453153|FASTKD1	ENSG00000138399|ENST00000453153|FASTKD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.3067016601562	2	528.844428	1055.6743	-2.3007	-0.0012167	-4.1989	-0.0022205	-6.4996	-0.0034373	528.842002164554	103.87	1.0618	103.87	103.34	104.41	0					51	24	3	0	0	0	0.026697	1	11633	11633		55.504	16.698	1	1427400			60435	4684	49858	49903	66219	66219					0.14869257793156976
VKLFVALGPI	10	Unmodified	_VKLFVALGPI_					0	0	0		ENSG00000138399|ENST00000453153|FASTKD1;nc|ENSG00000138399|Q53R41-2|FASTKD1;ENST00000487293.2_1_2:170416895-170419880:-|nuORF	ENSG00000138399|ENST00000453153|FASTKD1	ENSG00000138399|ENST00000453153|FASTKD1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	528.844428	1055.6743	0.15948	8.4341E-05	-5.1394	-0.0027179	-4.9799	-0.0026336	528.8413881939357	105.59	0.15508	104.24	104.15	104.3	-1.3482	0.18803	-0.00088801	NaN	37.159	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5131.8			60436	4684	49858	49903							0.14869257793156976
VKLGKNSII	9	Unmodified	_VKLGKNSII_					0	0	0		tr|A0A7D7A5W3|A0A7D7A5W3_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07715PE=3SV=1	tr|A0A7D7A5W3|A0A7D7A5W3_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07715PE=3SV=1	tr|A0A7D7A5W3|A0A7D7A5W3_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07715PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.2900695800781	2	486.316035	970.617516	-1.3375	-0.00065043	-1.017	-0.00049459	-2.3545	-0.001145	486.31487068193934	96.154	1.1133	94.326	94.027	95.14	-1.8286					30	21	2	0	0	0	0.027392	1	6330	6330		27.882	0	1	18145			60437	36179	49859	49904	66220	66220					0.13103210236658924
VKLGRACI	8	Unmodified	_VKLGRACI_					0	0	0		ENST00000581471.2_1_18:5238694-5238925:+|nuORF	ENST00000581471.2_1_18:5238694-5238925:+|nuORF	ENST00000581471.2_1_18:5238694-5238925:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	430.23565673828125	2	430.262748	858.510943	-0.65267	-0.00028082	-1.9161	-0.00082443	-2.5688	-0.0011052	430.26209015941964	50.094	0.3013	50.094	49.944	50.245	0					12	6	3	0	0	0	0.028476	1	3792	3792		42.474	0	1	105420			60438	13997	49860	49905	66221	66221					0.07602756470464556
VKLGRYDP	8	Unmodified	_VKLGRYDP_					0	0	0		ENST00000379834.6_1_6:7389749-7389923:+|nuORF	ENST00000379834.6_1_6:7389749-7389923:+|nuORF	ENST00000379834.6_1_6:7389749-7389923:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	473.2825622558594	2	474.269084	946.523616	0.73763	0.00034984	-1.2377	-0.00058699	-0.50004	-0.00023715	474.2683815043239	87.147	0.95377	85.716	85.334	86.288	-1.4311					36	18	2	0	0	0	0.028476	1	7567	7567		26.796	0	1	115890			60439	11133	49861	49906	66222	66222					0.04821491134362077
VKLGTVFRI	9	Unmodified	_VKLGTVFRI_					0	0	0		ENST00000352187.5_1_11:57193806-57195036:-|nuORF	ENST00000352187.5_1_11:57193806-57195036:-|nuORF	ENST00000352187.5_1_11:57193806-57195036:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.8314208984375	2	516.831852	1031.64915	-1.3742	-0.00071021	3.2026	0.0016552	1.8285	0.00094501	516.8331364143661	95.409	1.4654	92.941	92.661	94.127	-2.4685					61	28	3	0	0	0	0.28934	1	8381	8381		64.207	4.089	1	240470			60440	10653	49862	49907	66223	66223					0.1345920299061163
VKLGTVFRI	9	Unmodified	_VKLGTVFRI_					0	0	0		ENST00000352187.5_1_11:57193806-57195036:-|nuORF	ENST00000352187.5_1_11:57193806-57195036:-|nuORF	ENST00000352187.5_1_11:57193806-57195036:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	516.831852	1031.64915	0.080102	4.1399E-05	2.1839	0.0011287	2.264	0.0011701	516.8324772277805	94.806	1.6424	92.91	92.561	94.204	-1.8956	-0.015183	-0.00063491	NaN	64.207	74	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263000			60441	10653	49862	49907							0.1345920299061163
VKLILNINIE	10	Unmodified	_VKLILNINIE_					0	0	0		nc|ENSG00000048707|Q5THJ4-2|VPS13D;ENSG00000048707|ENST00000620676|VPS13D;VPS13D|p.M3578Ifs*3|1|0.03|ENSG00000048707|chr1:12369624-12369625|-/TATAT|frameshift_variant;VPS13D|p.G1592Yfs*19|1|0.06|ENSG00000048707|chr1:12282875-12282876|-/TACAAGTGTGACCAGCCGCGCCCAGGCA|frameshift_variant	nc|ENSG00000048707|Q5THJ4-2|VPS13D	nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.81689453125	2	584.868631	1167.72271	1.2994	0.00075995	1.2023	0.00070319	2.5017	0.0014631	584.8694572046494	109.06	0.70013	109.06	108.76	109.46	0					22	15	2	0	0	0	0.026802	1	12373	12373		19.997	9.7315	1	213530			60442	1159	49863	49908	66224	66224					0.1455570664240895
VKLKLNEEE	9	Unmodified	_VKLKLNEEE_					0	0	0			REV__tr|A0A7D6VNH1|A0A7D6VNH1_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12845PE=4SV=1	REV__tr|A0A7D6VNH1|A0A7D6VNH1_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12845PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.2957763671875	2	551.311146	1100.60774	1.6386	0.00090337	-0.22576	-0.00012447	1.4128	0.0007789	551.3109994230438	93.136	0.41821	93.136	92.803	93.221	0					19	9	3	0	0	0	0.027462	1	10103	10103		21.96	0	1	416930	+		60443	31181	49864	49909	66225	66225					0.06145977440610295
VKLLQIIVN	9	Unmodified	_VKLLQIIVN_					0	0	0		ENST00000395505.6_1_9:95608217-95608430:-|nuORF	ENST00000395505.6_1_9:95608217-95608430:-|nuORF	ENST00000395505.6_1_9:95608217-95608430:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	520.3473510742188	2	520.347335	1038.68012	0.45282	0.00023562	-0.76983	-0.00040058	-0.31702	-0.00016496	520.346854726536	130.58	2.2687	129.46	129.13	131.39	-1.1166					144	45	5	0	0	0	0.55588	1	10481	10481		37.159	0	1	1601100			60444	11292	49865	49910	66226	66226					0.16232356304840323
VKLLVYQTL	9	Unmodified	_VKLLVYQTL_					0	0	0		ENST00000570269.2_3_3:114047125-114047275:-|nuORF	ENST00000570269.2_3_3:114047125-114047275:-|nuORF	ENST00000570269.2_3_3:114047125-114047275:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.8624877929688	2	538.839342	1075.66413	2.7588	0.0014866	3.7195	0.0020042	6.4784	0.0034908	538.8416018555305	133.4	0.88089	131.87	131.66	132.54	-1.5257					27	17	3	0	0	0	0.027462	1	12917	12917		19.997	0	1	79173			60445	13893	49866	49911	66227	66227					0.12932650067932627
VKLMAPLQP	9	Unmodified	_VKLMAPLQP_					0	0	0			REV__ENST00000529462.5_1_8:145637924-145638077:-|nuORF	REV__ENST00000529462.5_1_8:145637924-145638077:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.2878723144531	2	498.799163	995.583773	-0.65964	-0.00032903	1.5276	0.00076195	0.86793	0.00043292	498.7980761679842	76.96	0.82324	74.078	73.889	74.712	-2.8818					25	16	3	0	0	0	0.027455	1	6172	6172		60.972	15.02	1	51191	+		60446	27191	49867	49912	66228	66228					0.08580465473244203
VKLMAPLQP	9	Unmodified	_VKLMAPLQP_					0	0	0			REV__ENST00000529462.5_1_8:145637924-145638077:-|nuORF	REV__ENST00000529462.5_1_8:145637924-145638077:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	498.799163	995.583773	-0.78763	-0.00039287	-2.7486	-0.001371	-3.5362	-0.0017639	498.7976471474038	75.734	0.61658	73.88	73.638	74.255	-1.854	-0.098952	-0.00021812	NaN	49.442	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32796	+		60447	27191	49867	49912							0.08580465473244203
VKLMPVIVY	9	Unmodified	_VKLMPVIVY_					0	0	0		ENST00000394524.7_1_4:114469862-114473202:-|nuORF	ENST00000394524.7_1_4:114469862-114473202:-|nuORF	ENST00000394524.7_1_4:114469862-114473202:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	531.324462890625	2	531.325014	1060.63547	-4.4352	-0.0023566	3.7376	0.0019859	-0.69763	-0.00037067	531.3268566643337	152.26	0.93442	152.03	151.7	152.63	-0.22697					42	18	4	0	0	0	0.64339	1	15472	15472		26.796	3.7536	1	63566			60448	11269	49868	49913	66229	66229					0.1075820916714747
VKLPRSRPQGT	11	Unmodified	_VKLPRSRPQGT_					0	0	0			REV__ENSG00000113555|ENST00000231484|PCDH12	REV__ENSG00000113555|ENST00000231484|PCDH12	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8685913085938	2	619.870028	1237.7255	-3.1194	-0.0019336	2.0434	0.0012667	-1.076	-0.00066696	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.71498	1	15092	15092		24.519	4.5224	1	806750	+		60449	18155	49869	49914	66230	66230					0.11614974819917734
VKLQGNKLV	9	Unmodified	_VKLQGNKLV_					0	0	0		tr|A0A7D6VXB0|A0A7D6VXB0_9CLOTFlagellinFlp1-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07880PE=4SV=1	tr|A0A7D6VXB0|A0A7D6VXB0_9CLOTFlagellinFlp1-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07880PE=4SV=1	tr|A0A7D6VXB0|A0A7D6VXB0_9CLOTFlagellinFlp1-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07880PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.2878723144531	2	499.821484	997.628415	-0.67896	-0.00033936	0.20705	0.00010349	-0.47191	-0.00023587	499.82153107180693	76.7	0.91241	73.761	73.598	74.51	-2.9389					32	18	2	0	0	0	0.027462	1	6172	6172		37.159	0	1	104530			60450	35271	49870	49915	66231	66231					0.1295061261093906
VKLQGNKLV	9	Unmodified	_VKLQGNKLV_					0	0	0		tr|A0A7D6VXB0|A0A7D6VXB0_9CLOTFlagellinFlp1-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07880PE=4SV=1	tr|A0A7D6VXB0|A0A7D6VXB0_9CLOTFlagellinFlp1-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07880PE=4SV=1	tr|A0A7D6VXB0|A0A7D6VXB0_9CLOTFlagellinFlp1-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07880PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	499.821484	997.628415	-0.90862	-0.00045415	0.66267	0.00033122	-0.24595	-0.00012293	499.8217546741082	75.678	1.1928	73.824	73.586	74.779	-1.854	0.031231	0.00025856	NaN	29.15	40	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	106800			60451	35271	49870	49915							0.1295061261093906
VKLRALTDF	9	Unmodified	_VKLRALTDF_					0	0	0		ENSG00000115271|ENST00000437150|GCA	ENSG00000115271|ENST00000437150|GCA	ENSG00000115271|ENST00000437150|GCA	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8162231445312	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.63422	1	11432	11432		27.882	5.9224	1	178650			60452	3079	49871	49916	66232	66232					0.09498308748311501
VKLRAQNML	9	Unmodified	_VKLRAQNML_					0	0	0			REV__ENST00000545001.2_1_12:64732273-64732573:-|nuORF	REV__ENST00000545001.2_1_12:64732273-64732573:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.8182373046875	2	536.818418	1071.62228	0.21032	0.0001129	-0.85606	-0.00045955	-0.64574	-0.00034664	536.8177736754573	67.975	1.5176	64.485	64.136	65.654	-3.4902					80	30	5	0	0	0	0.46377	1	5008	5008		45.952	1.8352	1	1357400	+		60453	18999	49872	49917	66233	66233					0.08933771107763278
VKLRRSGT	8	Unmodified	_VKLRRSGT_					0	0	0			REV__nc|ENSG00000135439|Q99490|AGAP2	REV__nc|ENSG00000135439|Q99490|AGAP2	MULTI-MSMS	OvCa9_classI_Rep2	2	458.787109375	2	458.787976	915.561398	-2.0925	-0.00096003	2.0092	0.00092177	-0.083388	-3.8258E-05	458.7887619770069	147.55	1.9467	147.32	146.82	148.77	-0.22697					104	38	4	0	0	0	0.75661	1	14900	14900		19.36	1.0356	1	613710	+		60454	19289	49873	49918	66234	66234					0.10024002119860143
VKLRRSGT	8	Unmodified	_VKLRRSGT_					0	0	0			REV__nc|ENSG00000135439|Q99490|AGAP2	REV__nc|ENSG00000135439|Q99490|AGAP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.7881164550781	2	458.787976	915.561398	-2.1404	-0.00098197	1.985	0.00091071	-0.15532	-7.1258E-05	458.78877967166295	148.29	2.0994	146.85	146.22	148.32	-1.435					112	42	4	0	0	0	0.75661	1	14606	14606		19.36	0	1	1351300	+		60455	19289	49873	49918	66235	66235					0.10024002119860143
VKLRSLIN	8	Unmodified	_VKLRSLIN_					0	0	0		ENSG00000156469|ENST00000287025|MTERF3	ENSG00000156469|ENST00000287025|MTERF3	ENSG00000156469|ENST00000287025|MTERF3	MULTI-MSMS	OvCa99_classI_Rep5	1	471.8096923828125	2	471.808377	941.6022	0.52211	0.00024634	-1.1764	-0.00055505	-0.65432	-0.00030871	471.80782218339226	63.476	2.0907	63.476	63.14	65.231	0					105	51	4	0	0	0	0.27528	1	5722	5722		111.65	6.9017	1	39476000			60456	5840	49874	49919	66236	66236					0.12906343439465218
VKLRTWVES	9	Unmodified	_VKLRTWVES_					0	0	0		nc|ENSG00000171606|Q96GC6-3|ZNF274;nc|ENSG00000171606|Q96GC6-2|ZNF274;ENSG00000171606|ENST00000617501|ZNF274	nc|ENSG00000171606|Q96GC6-3|ZNF274	nc|ENSG00000171606|Q96GC6-3|ZNF274	MULTI-MSMS	OvCa9_classI_Rep2	2	559.8262329101562	2	559.321848	1116.62914	0.41481	0.00023201	-0.30046	-0.00016805	0.11435	6.3957E-05	559.3203026302189	31.753	0.79087	29.043	28.789	29.58	-2.7097					35	15	3	0	0	0	0.69123	1	991	991		20.947	6.0821	1	39216			60457	7218	49875	49920	66237	66237					0.07549407259989493
VKLSDRKW	8	Unmodified	_VKLSDRKW_					0	0	0			REV__nc|ENSG00000214189|Q6ZQV5-2|ZNF788P	REV__nc|ENSG00000214189|Q6ZQV5-2|ZNF788P	MULTI-MSMS	OvCa9_classI_Rep2	2	516.3029174804688	2	516.303458	1030.59236	-1.364	-0.00070426	0.62015	0.00032019	-0.7439	-0.00038408	516.3037096883031	61.9	2.366	59.14	58.568	60.934	-2.7593					127	45	4	0	0	0	0.53531	1	4623	4623		73.975	2.679	1	1077700	+		60458	29128	49876	49921	66238	66238					0.07829155434069435
VKLSIFIAR	9	Unmodified	_VKLSIFIAR_					0	0	0		ENST00000560933.5_1_22:39487593-39488026:+|nuORF	ENST00000560933.5_1_22:39487593-39488026:+|nuORF	ENST00000560933.5_1_22:39487593-39488026:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.8405151367188	2	523.839677	1045.6648	-0.84837	-0.00044441	0.57936	0.00030349	-0.26901	-0.00014092	523.8398892974864	103.3	2.59	101.1	100.67	103.26	-2.1994					128	49	4	0	0	0	0.16562	1	9328	9328		82.241	5.3939	1	841680			60459	13744	49877	49922	66239	66239					0.14379489507655308
VKLSVDRPLV	10	Unmodified	_VKLSVDRPLV_					0	0	0			REV__tr|A0A553SHL2|A0A553SHL2_NIACIInosine-5'-monophosphatedehydrogenaseOS=NialliacirculansOX=1397GN=guaBPE=3SV=1	REV__tr|A0A553SHL2|A0A553SHL2_NIACIInosine-5'-monophosphatedehydrogenaseOS=NialliacirculansOX=1397GN=guaBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.7975463867188	2	563.353148	1124.69174	1.1792	0.00066433	-1.6659	-0.00093851	-0.4867	-0.00027418	563.3517167410921	58.393	0.70059	55.001	54.802	55.502	-3.392					19	13	2	0	0	0	0.027028	1	3887	3887		31.53	6.0796	1	30480	+		60460	29815	49878	49923	66240	66240					0.13438553328182934
VKLVEVLD	8	Unmodified	_VKLVEVLD_					0	0	0		nc|ENSG00000110931|Q96RR4-7|CAMKK2;nc|ENSG00000110931|Q96RR4-2|CAMKK2;nc|ENSG00000110931|Q96RR4-3|CAMKK2;ENSG00000110931|ENST00000404169|CAMKK2;nc|ENSG00000110931|Q96RR4-6|CAMKK2;nc|ENSG00000110931|Q96RR4-5|CAMKK2;nc|ENSG00000110931|Q96RR4-4|CAMKK2	nc|ENSG00000110931|Q96RR4-7|CAMKK2	nc|ENSG00000110931|Q96RR4-7|CAMKK2	MULTI-SECPEP	OvCa9_classI_Rep2	2	456.7973937988281	2	457.781493	913.548434	0.15991	7.3203E-05	-0.14729	-6.7426E-05	0.012619	5.7769E-06	457.7812925954705	104.21	1.8333	103.63	103.32	105.16	-0.57639					61	36	2	0	0	0	0.028476	1	9630	9630		55.504	9.5523	1	221250			60461	14958	49879	49924	66241	66241					0.08820126217085544
VKLVTLTATN	10	Unmodified	_VKLVTLTATN_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.3195190429688	2	530.324057	1058.63356	-0.48553	-0.00025749	-0.13082	-6.9379E-05	-0.61636	-0.00032687	530.3238090065903	33.657	0.38947	33.657	33.483	33.873	0					11	7	2	0	0	0	0.027028	1	1564	1564		24.519	7.1542	1	102200	+		60462	28942;32737	49880	49925	66242	66242					0.10658871682903737
VKLVVKNT	8	Unmodified	_VKLVVKNT_					0	0	0			REV__nc|ENSG00000114455|Q9UM44-2|HHLA2	REV__nc|ENSG00000114455|Q9UM44-2|HHLA2	MULTI-MSMS	OvCa99_classI_Rep5	1	450.79766845703125	2	450.797478	899.580402	0.067732	3.0533E-05	-0.079561	-3.5866E-05	-0.011829	-5.3324E-06	450.7973125245638	41.158	0.49298	41.158	40.969	41.462	0					25	10	4	0	0	0	0.42649	1	2557	2557		84.916	0	1	499710	+		60463	18188	49881	49926	66243	66243					0.12659538690888894
VKLVVKNT	8	Unmodified	_VKLVVKNT_					0	0	0			REV__nc|ENSG00000114455|Q9UM44-2|HHLA2	REV__nc|ENSG00000114455|Q9UM44-2|HHLA2	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	450.797478	899.580402	0.067732	3.0533E-05	-0.079561	-3.5866E-05	-0.011829	-5.3324E-06	450.7973125245638	41.158	0.49298	41.158	40.969	41.462	0	0	0	NaN	84.916	25	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	499710	+		60464	18188	49881	49926							0.12659538690888894
VKLVVPKEP	9	Unmodified	_VKLVVPKEP_					0	0	0			REV__ENSG00000160868|ENST00000651514|CYP3A4	REV__ENSG00000160868|ENST00000651514|CYP3A4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.82098388671875	2	504.826235	1007.63792	0.083586	4.2196E-05	-0.17478	-8.8233E-05	-0.091194	-4.6037E-05	504.8258878932431	111.43	0.73717	109.92	109.68	110.42	-1.5111					20	13	2	0	0	0	0.027462	1	10308	10308		26.693	0	1	41936	+		60465	20678	49882	49927	66244	66244					0.13440380896463466
VKLWDTGYK	9	Unmodified	_VKLWDTGYK_					0	0	0			REV__tr|A0A7D6VRM0|A0A7D6VRM0_9CLOTNitrogenaseproteinalphachainOS=ClostridiumintestinaleOX=36845GN=nifDPE=3SV=1	REV__tr|A0A7D6VRM0|A0A7D6VRM0_9CLOTNitrogenaseproteinalphachainOS=ClostridiumintestinaleOX=36845GN=nifDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	555.3026733398438	2	555.303124	1108.5917	0.26089	0.00014487	-4.2962	-0.0023857	-4.0353	-0.0022408	555.3006478022181	74.771	1.3559	71.541	71.24	72.596	-3.2308					77	27	4	0	0	0	0.2422	1	5879	5879		69.628	14.851	1	924810	+		60466	31427	49883	49928	66245	66245					0.041743159943507635
VKLWLKPD	8	Unmodified	_VKLWLKPD_					0	0	0		ENST00000549913.6_1_12:113307544-113334582:+|nuORF;nc|ENSG00000089169|Q9Y2J0-2|RPH3A;ENSG00000089169|ENST00000389385|RPH3A	ENST00000549913.6_1_12:113307544-113334582:+|nuORF	ENST00000549913.6_1_12:113307544-113334582:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.323486328125	2	499.805303	997.596052	-0.41436	-0.0002071	1.5874	0.0007934	1.1731	0.0005863	500.3064912358984	52.368	0.26322	52.368	52.127	52.39	0					8	5	2	0	0	0	0.028476	1	4087	4087		17.365	0	1	70915			60467	1814	49884	49929	66246	66246					0.09715825207933904
VKLYVSRKKV	10	Unmodified	_VKLYVSRKKV_					0	0	0			REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	REV__nc|ENSG00000048342|Q9P2K1-2|CC2D2A	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.2497253417969	3	407.267686	1218.78123	0.67664	0.00027557	-2.1235	-0.00086485	-1.4469	-0.00058928	407.2660298888966	39.415	0.22138	39.415	39.242	39.463	0					7	4	2	0	0	0	0.026658	1	2302	2302		63.426	29.34	1	16855	+		60468	16668	49885	49930	66247	66247					0.1805880800752675
VKMFTERDLL	10	Unmodified	_VKMFTERDLL_					0	0	0		ENSG00000058453|ENST00000375541|CROCC;CROCC|p.Q1162Hfs*65|1|0.07|ENSG00000058453|chr1:16955332-16955332|G/-|frameshift_variant	ENSG00000058453|ENST00000375541|CROCC	ENSG00000058453|ENST00000375541|CROCC	MULTI-SECPEP	OvCa9_classI_Rep4_	4	417.9103698730469	3	417.897041	1250.66929	0.64287	0.00026865	0.33861	0.0001415	0.98148	0.00041016	417.8962658936572	35.251	0.2509	32.402	32.24	32.491	-2.849					7	4	2	0	0	0	0.026942	1	1111	1111		32.751	6.6872	1	7946.6			60469	1245	49886	49931	66248	66248					0.05398585868260852
VKMGALCS	8	Unmodified	_VKMGALCS_					0	0	0			REV__tr|A0A553SPB2|A0A553SPB2_NIACIDUF523domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26035PE=4SV=1	REV__tr|A0A553SPB2|A0A553SPB2_NIACIDUF523domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26035PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	404.7071533203125	2	404.706417	807.398281	1.1299	0.00045728	-2.0081	-0.0008127	-0.87821	-0.00035542	404.70593607710475	43.123	1.7338	43.123	42.839	44.573	0					94	39	4	0	0	0	0.67745	1	2807	2807		47.916	3.3845	1	8967400	+		60470	30520	49887	49932	66249	66249					-0.013122603178771897
VKMGERLLL	9	Unmodified	_VKMGERLLL_					0	0	0		ENST00000260605.12_1_2:44001254-44010677:+|nuORF	ENST00000260605.12_1_2:44001254-44010677:+|nuORF	ENST00000260605.12_1_2:44001254-44010677:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	529.8251342773438	2	529.823169	1057.63179	1.0185	0.00053961	-0.32111	-0.00017013	0.69737	0.00036948	529.8228960607835	150.49	2.2581	150.49	150.14	152.4	0					127	45	5	0	0	0	0.53483	1	17698	17698		39.253	0.23134	1	1624000			60471	9851	49888	49933	66250	66250					0.10527539393319785
VKMLKKPK	8	Unmodified	_VKMLKKPK_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A;ENST00000488297.2_1_5:87678278-87678506:+|nuORF;ENST00000472161.1_1_18:57817108-57817555:+|nuORF	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.3088684082031	2	486.325348	970.636143	-0.19159	-9.3176E-05	3.7218	0.00181	3.5302	0.0017168	486.3272946385565	30.444	0.2471	30.444	30.285	30.532	0					9	4	3	0	0	0	0.028476	1	1180	1180		35.201	6.0512	1	49463			60472	5224	49889	49934	66251	66251					0.14965048606859455
VKMMASSA	8	Unmodified	_VKMMASSA_					0	0	0		ENSG00000151388|ENST00000504830|ADAMTS12;nc|ENSG00000151388|P58397-3|ADAMTS12;nc|ENSG00000151388|P58397-2|ADAMTS12	ENSG00000151388|ENST00000504830|ADAMTS12	ENSG00000151388|ENST00000504830|ADAMTS12	MULTI-MSMS	OvCa99_classI_Rep5	1	412.70404052734375	2	412.703874	823.393195	0.74792	0.00030867	-1.5917	-0.00065691	-0.84379	-0.00034824	412.70357783628623	32.14	6.2924	32.14	31.559	37.851	0					232	132	4	0	0	0	0.7043	1	1454	1454		42.474	0	1	839830			60473	5550	49890	49935	66252	66252					-0.025565641804860206
VKMTNEAPK	9	Unmodified	_VKMTNEAPK_					0	0	0		ENSG00000118997|ENST00000312428|DNAH7;nc|ENSG00000118997|Q8WXX0-2|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	ENSG00000118997|ENST00000312428|DNAH7	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.2823486328125	2	509.273509	1016.53247	-0.037308	-1.9E-05	-0.66023	-0.00033624	-0.69754	-0.00035524	509.77445453537314	70.682	1.0314	70.682	69.883	70.915	0					45	25	3	0	0	0	0.027457	1	6703	6703		56.434	8.7765	1	615560			60474	3337	49891	49936	66253	66253					0.024860967085373886
VKMWYVNTF	9	Unmodified	_VKMWYVNTF_					0	0	0			REV__ENST00000562949.1_2_16:69362927-69368484:-|nuORF	REV__ENST00000562949.1_2_16:69362927-69368484:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.7926635742188	2	594.299527	1186.5845	1.4919	0.00088664	-1.1585	-0.00068848	0.33343	0.00019816	594.2984364588517	147.06	0.53957	147.06	146.82	147.36	0					25	10	3	0	0	0	0.027462	1	17239	17239		14.865	0.72775	1	110130	+		60475	23551	49892	49937	66254	66254					-0.0013273987769935047
VKNEKVIYDTI	11	Unmodified	_VKNEKVIYDTI_					0	0	0			REV__tr|A0A7D6VSV8|A0A7D6VSV8_9CLOTAdenylyl-sulfatereductasesubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_00540PE=4SV=1	REV__tr|A0A7D6VSV8|A0A7D6VSV8_9CLOTAdenylyl-sulfatereductasesubunitalphaOS=ClostridiumintestinaleOX=36845GN=HZF06_00540PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	441.30120849609375	3	441.250249	1320.72892	0.04692	2.0703E-05	-3.675	-0.0016216	-3.6281	-0.0016009	441.58356300362084	60.85	0.14893	57.42	57.345	57.494	-3.43					4	2	2	0	0	0	0.026145	1	4133	4133		17.833	0	1	10791	+		60476	31545	49893	49938	66255	66255					0.08138180083278712
VKNFAKHQNI	10	Unmodified	_VKNFAKHQNI_					0	0	0		tr|A0A7D6VQU2|A0A7D6VQU2_9CLOTPhagereplisomeorganizerN-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23620PE=4SV=1	tr|A0A7D6VQU2|A0A7D6VQU2_9CLOTPhagereplisomeorganizerN-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23620PE=4SV=1	tr|A0A7D6VQU2|A0A7D6VQU2_9CLOTPhagereplisomeorganizerN-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23620PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.1905822753906	3	400.22789	1197.66184	1.4786	0.00059178	4.107	0.0016438	5.5857	0.0022355	400.2297101841964	33.063	0.43777	33.063	32.748	33.186	0					11	8	2	0	0	0	0.027147	1	1492	1492		6.6596	3.2509	1	32945			60477	34869	49894	49939	66256	66256					0.0709161438285264
VKNLCVIFK	9	Unmodified	_VKNLCVIFK_					0	0	0			REV__nc|ENSG00000253729|P78527-2|PRKDC	REV__nc|ENSG00000253729|P78527-2|PRKDC	MULTI-SECPEP	OvCa9_classI_Rep2	2	532.3450927734375	2	532.320263	1062.62597	-1.4292	-0.00076077	-1.2571	-0.00066919	-2.6863	-0.00143	532.319424063831	136.81	0.77861	136.58	136.21	136.99	-0.22696					21	15	2	0	0	0	0.027462	1	13602	13602		44.117	17.321	1	11761	+		60478	23506	49895	49940	66257	66257					0.09716440881629751
VKNPAVLIPI	10	Unmodified	_VKNPAVLIPI_					0	0	0			REV__tr|A0A7D6ZFK7|A0A7D6ZFK7_9CLOTSGNHhydrolase-typeesterasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15360PE=4SV=1	REV__tr|A0A7D6ZFK7|A0A7D6ZFK7_9CLOTSGNHhydrolase-typeesterasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15360PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	532.3450927734375	2	532.347335	1062.68012	-1.4454	-0.00076948	1.2224	0.00065073	-0.22307	-0.00011875	532.3478924642602	136.75	0.82806	136.53	136.31	137.13	-0.22696					28	16	2	0	0	0	0.66721	1	13602	13602		34.173	5.023	1	42614	+		60479	31973	49896	49941	66258	66258					0.15128356304853696
VKNPAVLIPI	10	Unmodified	_VKNPAVLIPI_					0	0	0			REV__tr|A0A7D6ZFK7|A0A7D6ZFK7_9CLOTSGNHhydrolase-typeesterasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15360PE=4SV=1	REV__tr|A0A7D6ZFK7|A0A7D6ZFK7_9CLOTSGNHhydrolase-typeesterasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15360PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	532.347335	1062.68012	-1.4454	-0.00076948	1.2224	0.00065073	-0.22307	-0.00011875	532.3478924642602	136.75	0.82806	136.53	136.31	137.13	-0.22696	0	0	NaN	34.173	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42614	+		60480	31973	49896	49941							0.15128356304853696
VKNQRRWTIYH	11	Unmodified	_VKNQRRWTIYH_					0	0	0			REV__nc|ENSG00000163378|Q5NDL2-3|EOGT	REV__nc|ENSG00000163378|Q5NDL2-3|EOGT	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.71929931640625	3	500.944265	1499.81096	-0.26623	-0.00013337	-3.2283	-0.0016172	-3.4946	-0.0017506	501.277108665712	40.991	0.22388	40.991	40.926	41.149	0					7	4	2	0	0	0	0.026344	1	2540	2540		14.086	0	1	45461	+		60481	20831	49897	49942	66259	66259					0.08105140005613976
VKNRCYAKY	9	Unmodified	_VKNRCYAKY_					0	0	0			REV__nc|ENSG00000268758|Q86SQ3-2|ADGRE4P	REV__nc|ENSG00000268758|Q86SQ3-2|ADGRE4P	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.3270263671875	2	572.800226	1143.5859	2.0207	0.0011574	-0.72088	-0.00041292	1.2998	0.00074451	572.7984970160071	120.53	0.46062	120.53	120.32	120.78	0					16	10	3	0	0	0	0.027462	1	13849	13849		35.618	2.8059	1	381050	+		60482	29189	49898	49943	66260	66260					0.019848942110456846
VKNRDPSI	8	Unmodified	_VKNRDPSI_					0	0	0			REV__tr|A0A7D7A1G2|A0A7D7A1G2_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12370PE=4SV=1	REV__tr|A0A7D7A1G2|A0A7D7A1G2_9CLOTLipoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12370PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	464.76385498046875	2	464.764166	927.513779	-0.11336	-5.2684E-05	-0.30597	-0.00014221	-0.41933	-0.00019489	464.7639016708347	66.87	1.1907	64.209	63.751	64.941	-2.661					57	23	4	0	0	0	0.66057	1	5202	5202		51.335	0	1	303690	+		60483	32490	49899	49944	66261	66261					0.047123031289856954
VKNTTILLL	9	Unmodified	_VKNTTILLL_					0	0	0		ENST00000317025.12_1_8:38131368-38131458:-|nuORF	ENST00000317025.12_1_8:38131368-38131458:-|nuORF	ENST00000317025.12_1_8:38131368-38131458:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.7488708496094	2	507.831517	1013.64848	-0.35975	-0.00018269	-1.1191	-0.00056833	-1.4789	-0.00075102	507.83047028512397	78.21	0.51537	76.47	76.196	76.712	-1.7398					17	9	3	0	0	0	0.027462	1	6515	6515		20.947	3.4789	1	54629			60484	10350	49900	49945	66262	66262					0.14220363550907678
VKNTTILLL	9	Unmodified	_VKNTTILLL_					0	0	0		ENST00000317025.12_1_8:38131368-38131458:-|nuORF	ENST00000317025.12_1_8:38131368-38131458:-|nuORF	ENST00000317025.12_1_8:38131368-38131458:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	507.831517	1013.64848	-0.72396	-0.00036765	0.24438	0.00012411	-0.47958	-0.00024354	507.8314497759698	78.527	0.5534	76.175	75.9	76.453	-2.3527	-0.14774	0.00025426	NaN	20.947	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50690			60485	10350	49900	49945							0.14220363550907678
VKNVGKPSNKV	11	Unmodified	_VKNVGKPSNKV_					0	0	0		nc|ENSG00000196263|Q9BX82-2|ZNF471	nc|ENSG00000196263|Q9BX82-2|ZNF471	nc|ENSG00000196263|Q9BX82-2|ZNF471	MULTI-MSMS	OvCa99_classI_Rep5	1	585.3557739257812	2	585.35368	1168.69281	-0.15836	-9.2697E-05	-0.49355	-0.0002889	-0.65191	-0.0003816	585.3534354979967	72.896	1.4088	72.896	72.574	73.983	0					88	35	4	0	0	0	0.068862	1	7104	7104		104.01	5.4316	1	23515000			60486	15240	49901	49946	66263	66263					0.11520767697084011
VKNVRVWR	8	Unmodified	_VKNVRVWR_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.3164672851562	2	528.824892	1055.63523	1.9604	0.0010367	1.145	0.00060553	3.1054	0.0016422	528.8241509520707	95.39	0.70744	95.39	95.161	95.869	0					22	16	2	0	0	0	0.028476	1	10384	10384		45.952	0	1	793670	+		60487	28942	49902	49947	66264	66264					0.10963970282182345
VKPAVTTTTEG	11	Unmodified	_VKPAVTTTTEG_					0	0	0			REV__nc|ENSG00000075275|Q9NYQ6|CELSR1	REV__nc|ENSG00000075275|Q9NYQ6|CELSR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.3245239257812	2	552.300778	1102.587	-0.62131	-0.00034315	-3.9287	-0.0021699	-4.5501	-0.002513	552.799042837219	29.135	0.14904	29.135	29.037	29.186	0					4	2	2	0	0	0	0.025958	1	1006	1006		28.081	9.7571	1	13290	+		60488	16968	49903	49948	66265	66265					0.03981387060935049
VKPDKVLPPAS	11	Unmodified	_VKPDKVLPPAS_					0	0	0		tr|A0A553SNR7|A0A553SNR7_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_25055PE=3SV=1	tr|A0A553SNR7|A0A553SNR7_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_25055PE=3SV=1	tr|A0A553SNR7|A0A553SNR7_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_25055PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8429565429688	2	575.845156	1149.67576	-3.1773	-0.0018296	-0.077675	-4.4729E-05	-3.255	-0.0018744	575.8447773729116	141.87	3.8997	140.86	138.96	142.86	-1.0106					243	78	6	0	0	0	0.72064	1	11744	11744		22.58	0.61977	1	129610			60489	33951	49904	49949	66266	66266					0.10690847091291289
VKPFKGWVP	9	Unmodified	_VKPFKGWVP_					0	0	0		ENSG00000107957|ENST00000369774|SH3PXD2A;nc|ENSG00000107957|Q5TCZ1-2|SH3PXD2A;nc|ENSG00000107957|Q5TCZ1-3|SH3PXD2A	ENSG00000107957|ENST00000369774|SH3PXD2A	ENSG00000107957|ENST00000369774|SH3PXD2A	MULTI-MSMS	OvCa9_classI_Rep2	2	529.3086547851562	2	529.313295	1056.61204	-1.2294	-0.00065075	-2.8405	-0.0015035	-4.07	-0.0021543	529.309695523309	47.811	1.2925	45.101	44.687	45.979	-2.7097					50	25	3	0	0	0	0.59983	1	2933	2933		31.955	0	1	311230			60490	2631	49905	49950	66267	66267					0.08599531444860986
VKPLEAALTT	10	Unmodified	_VKPLEAALTT_					0	0	0			REV__ENSG00000109738|ENST00000264428|GLRB	REV__ENSG00000109738|ENST00000264428|GLRB	MULTI-MSMS	OvCa9_classI_Rep3	3	521.8134765625	2	521.810782	1041.60701	0.66684	0.00034797	3.6814	0.001921	4.3482	0.002269	521.8125550496435	68.201	4.7433	65.386	65.063	69.806	-2.8144					153	94	3	0	0	0	0.6349	1	2987	2987		37.812	0.65241	1	529900	+		60491	17945	49906	49951	66268	66268					0.0878718279154782
VKPLELLII	9	Unmodified	_VKPLELLII_					0	0	0			REV__ENST00000337339.6_1_X:11785039-11785279:+|nuORF	REV__ENST00000337339.6_1_X:11785039-11785279:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.3212890625	2	519.352086	1036.68962	-1.6301	-0.00084661	-3.8616	-0.0020055	-5.4917	-0.0028521	519.349665364655	107.02	0.21135	105.14	105.01	105.22	-1.8785					5	3	2	0	0	0	0.027462	1	9747	9747		14.865	8.1293	1	7152.2	+		60492	24597	49907	49952	66269	66269					0.17274124590403517
VKPLFIILL	9	Unmodified	_VKPLFIILL_					0	0	0			REV__Harlequin-int_dup372|chr10:84170027-84170994:-|2.0484706391337646|0.252139802420439|3.02|427.0|51|1|anti-sense	REV__Harlequin-int_dup372|chr10:84170027-84170994:-|2.0484706391337646|0.252139802420439|3.02|427.0|51|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.345947265625	2	528.364996	1054.71544	2.0764	0.0010971	-4.4384	-0.0023451	-2.362	-0.001248	528.3625730284433	87.651	0.62419	87.651	87.505	88.13	0					19	14	2	0	0	0	0.027462	1	9304	9304		23.042	0	1	540800	+		60493	28184	49908	49953	66270	66270					0.1902701883266218
VKPLPAPLD	9	Unmodified	_VKPLPAPLD_					0	0	0		nc|ENSG00000105618|Q8WWY3-3|PRPF31;ENST00000466404.5_1_19:54621832-54631576:+|nuORF;nc|ENSG00000105618|Q8WWY3-4|PRPF31;ENSG00000105618|ENST00000321030|PRPF31	nc|ENSG00000105618|Q8WWY3-3|PRPF31	nc|ENSG00000105618|Q8WWY3-3|PRPF31	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.2732849121094	2	475.289485	948.564418	-0.53614	-0.00025482	1.6764	0.00079677	1.1402	0.00054194	475.2902163851802	68.071	0.60122	68.071	67.88	68.481	0					18	14	2	0	0	0	0.027462	1	6389	6389		26.693	0	1	878010			60494	2475	49909	49954	66271	66271					0.08807832453976516
VKPLPSQFLLP	11	Unmodified	_VKPLPSQFLLP_					0	0	0		nc|ENSG00000167614|Q9H313-5|TTYH1	nc|ENSG00000167614|Q9H313-5|TTYH1	nc|ENSG00000167614|Q9H313-5|TTYH1	MULTI-MSMS	OvCa9_classI_Rep3	3	413.5878601074219	3	413.588425	1237.74344	1.5895	0.00065738	-3.7084	-0.0015338	-2.119	-0.00087638	413.5867931980936	68.355	2.099	65.541	64.862	66.961	-2.8144					118	41	5	0	0	0	0.72477	1	2947	2947		18.531	0.69791	1	366370			60495	15160	49910	49955	66272	66272					0.1340829702207884
VKPMGRQPKKQ	11	Unmodified	_VKPMGRQPKKQ_					0	0	0			REV__ENSG00000180611|ENST00000392452|MB21D2	REV__ENSG00000180611|ENST00000392452|MB21D2	MULTI-MSMS	OvCa9_classI_Rep3	3	432.9263916015625	3	432.923813	1295.74961	1.6734	0.00072447	4.3703	0.001892	6.0437	0.0026165	432.9256048538329	64.918	2.5849	61.925	61.446	64.031	-2.9933					130	50	4	0	0	0	0.70315	1	2587	2587		28.577	0.93281	1	231790	+		60496	22182	49911	49956	66273	66273					0.11356491981950967
VKPPASAR	8	Unmodified	_VKPPASAR_					0	0	0		ENSG00000135912|ENST00000392102|TTLL4;ENST00000465558.5_1_2:219610891-219612857:+|nuORF;ENST00000475950.5_1_2:219610891-219612096:+|nuORF	ENSG00000135912|ENST00000392102|TTLL4	ENSG00000135912|ENST00000392102|TTLL4	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.7042236328125	2	413.250695	824.486836	0.93565	0.00038666	-0.94978	-0.0003925	-0.014131	-5.8398E-06	413.2501772702125	32.478	0.54236	32.478	32.254	32.796	0					17	10	2	0	0	0	0.028476	1	1396	1396		37.159	8.9048	1	43525			60497	4426	49912	49957	66274	66274					0.06757239308467433
VKPPKPPDE	9	Unmodified	_VKPPKPPDE_					0	0	0			REV__ENSG00000272333|ENST00000420124|KMT2B	REV__ENSG00000272333|ENST00000420124|KMT2B	MULTI-MSMS	OvCa9_classI_Rep2	2	503.7783508300781	2	503.782025	1005.5495	-3.0867	-0.001555	-3.4935	-0.00176	-6.5803	-0.003315	503.78006253314857	36.309	2.2758	33.6	32.75	35.026	-2.7097					126	45	4	0	0	0	0.31747	1	1541	1541		60.972	5.4677	1	296190	+		60498	23613	49913	49958	66275	66275					0.046943405859906306
VKPQLRPLL	9	Unmodified	_VKPQLRPLL_					0	0	0		nc|ENSG00000007174|Q9NYC9-2|DNAH9;DNAH9|p.H4399Qfs*22|1|0.04|ENSG00000007174|chr17:11962220-11962220|T/-|frameshift_variant;ENSG00000007174|ENST00000262442|DNAH9	nc|ENSG00000007174|Q9NYC9-2|DNAH9	nc|ENSG00000007174|Q9NYC9-2|DNAH9	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.80810546875	2	532.352951	1062.69135	-0.53316	-0.00028383	-2.0586	-0.0010959	-2.5917	-0.0013797	532.3533241751869	77.08	0.62575	74.709	74.558	75.184	-2.3715					15	11	2	0	0	0	0.027456	1	4037	4037		23.042	0	1	13329			60499	749	49914	49959	66276	66276					0.16251178398988486
VKPRAPNPWL	10	Unmodified	_VKPRAPNPWL_					0	0	0		ENSG00000187105|ENST00000553558|HEATR4	ENSG00000187105|ENST00000553558|HEATR4	ENSG00000187105|ENST00000553558|HEATR4	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.34423828125	2	589.345658	1176.67676	-2.1868	-0.0012888	-2.4431	-0.0014398	-4.6299	-0.0027286	589.3441619466173	148.26	4.549	146.82	145.53	150.08	-1.435					304	95	6	0	0	0	0.7759	1	14750	14750		21.96	0	1	385010			60500	8386	49915	49960	66277	66277					0.09549106250847217
VKPRLCCIW	9	Unmodified	_VKPRLCCIW_					0	0	0			REV__HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|315|2|anti-sense	REV__HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|315|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.2702026367188	2	559.30409	1116.59363	2.3407	0.0013092	4.1335	0.0023119	6.4742	0.0036211	559.3065608232737	112.6	0.67577	112.6	112.25	112.92	0					18	14	2	0	0	0	0.027462	1	12832	12832		25.45	1.2474	1	75838	+		60501	28273	49916	49961	66278	66278					0.03999330206988816
VKPSWVIL	8	Unmodified	_VKPSWVIL_					0	0	0		PAXIP1|p.A840Lfs*22|1|0.08|ENSG00000157212|chr7:154957256-154957256|T/-|frameshift_variant;PAXIP1|p.G890Efs*52|1|0.09|ENSG00000157212|chr7:154954407-154954408|-/T|frameshift_variant;ENSG00000157212|ENST00000404141|PAXIP1	PAXIP1|p.A840Lfs*22|1|0.08|ENSG00000157212|chr7:154957256-154957256|T/-|frameshift_variant	PAXIP1|p.A840Lfs*22|1|0.08|ENSG00000157212|chr7:154957256-154957256|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	471.29339599609375	2	471.294571	940.574589	-0.27751	-0.00013079	-4.1621	-0.0019616	-4.4396	-0.0020924	471.2925260681946	81.937	1.3959	79.64	79.284	80.68	-2.2963					82	27	4	0	0	0	0.48084	1	4592	4592		79.451	10.664	1	1242100			60502	5882	49917	49962	66279	66279					0.10192440179241657
VKPVLLHLT	9	Unmodified	_VKPVLLHLT_					0	0	0		HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|190|3|sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|190|3|sense	HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|190|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.34564208984375	2	510.334227	1018.6539	1.8613	0.00094989	0.19023	9.7079E-05	2.0515	0.001047	510.33416991799726	117	1.3317	117	116.6	117.93	0					40	28	2	0	0	0	0.027462	1	13487	13487		15.642	0	1	108110			60503	14400	49918	49963	66280	66280					0.1453208713337517
VKQGPISDN	9	Unmodified	_VKQGPISDN_					0	0	0		ENSG00000013288|ENST00000285599|MAN2B2;nc|ENSG00000013288|Q9Y2E5-2|MAN2B2;ENST00000504960.1_1_4:6606979-6611590:+|nuORF	ENSG00000013288|ENST00000285599|MAN2B2	ENSG00000013288|ENST00000285599|MAN2B2	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.7831115722656	2	479.253631	956.49271	-0.44436	-0.00021296	0.48866	0.00023419	0.044298	2.123E-05	479.2538051371992	53.686	0.70057	53.686	53.389	54.089	0					35	16	3	0	0	0	0.027441	1	4291	4291		32.812	3.6629	1	1422900			60504	981	49919	49964	66281	66281					0.012722930294671642
VKQGPISDN	9	Unmodified	_VKQGPISDN_					0	0	0		ENSG00000013288|ENST00000285599|MAN2B2;nc|ENSG00000013288|Q9Y2E5-2|MAN2B2;ENST00000504960.1_1_4:6606979-6611590:+|nuORF	ENSG00000013288|ENST00000285599|MAN2B2	ENSG00000013288|ENST00000285599|MAN2B2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	479.253631	956.49271	0.22533	0.00010799	0.60586	0.00029036	0.83119	0.00039835	479.2537161830162	57.144	0.91745	53.799	53.577	54.495	-3.3449	0.056539	9.0548E-05	NaN	25.574	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45409			60505	981	49919	49964							0.012722930294671642
VKQITMSGP	9	Unmodified	_VKQITMSGP_					0	0	0			REV__nc|ENSG00000285053|Q15813-2|TBCE	REV__nc|ENSG00000285053|Q15813-2|TBCE	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.7826843261719	2	480.762778	959.511002	0.16104	7.7424E-05	-0.61167	-0.00029407	-0.45063	-0.00021665	480.7622498881352	81.402	1.4775	79.754	79.013	80.491	-1.6485					65	28	4	0	0	0	0.027462	1	6988	6988		6.3127	0	1	99601	+		60506	29203	49920	49965	66282	66282					0.02962711679822405
VKQKSADLPII	11	Unmodified	_VKQKSADLPII_					0	0	0		tr|A0A553SKZ7|A0A553SKZ7_NIACIMetallophosphoesteraseOS=NialliacirculansOX=1397GN=CEQ21_19665PE=4SV=1	tr|A0A553SKZ7|A0A553SKZ7_NIACIMetallophosphoesteraseOS=NialliacirculansOX=1397GN=CEQ21_19665PE=4SV=1	tr|A0A553SKZ7|A0A553SKZ7_NIACIMetallophosphoesteraseOS=NialliacirculansOX=1397GN=CEQ21_19665PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3690185546875	2	606.371538	1210.72852	-3.14	-0.001904	-0.05994	-3.6346E-05	-3.1999	-0.0019404	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.72511	1	15112	15112		14.137	1.3254	1	257720			60507	33670	49921	49966	66283	66283					0.13158805154080255
VKQLQHSGP	9	Unmodified	_VKQLQHSGP_					0	0	0		nc|ENSG00000105639|P52333-2|JAK3;ENSG00000105639|ENST00000458235|JAK3	nc|ENSG00000105639|P52333-2|JAK3	nc|ENSG00000105639|P52333-2|JAK3	MULTI-MSMS	OvCa99_classI_Rep5	1	497.27911376953125	2	497.277441	992.540328	-0.12151	-6.0423E-05	-0.27875	-0.00013862	-0.40026	-0.00019904	497.27718902003966	60.911	0.5982	60.911	60.602	61.2	0					27	13	3	0	0	0	0.50149	1	5340	5340		42.396	1.8235	1	1564000			60508	2476	49922	49967	66284	66284					0.04375992020334252
VKQRVINL	8	Unmodified	_VKQRVINL_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;ENST00000586052.5_1_17:76435259-76454697:-|nuORF;DNAH17|p.D3708E|1|0.62|ENSG00000187775|chr17:78449501-78449501|G/C|missense_variant	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-MSMS	OvCa99_classI_Rep5	1	485.3149108886719	2	485.313826	968.613099	0.13308	6.4584E-05	-0.89036	-0.0004321	-0.75728	-0.00036752	485.3134395319715	62.422	2.2946	62.422	62.122	64.417	0					138	56	5	0	0	0	0.62934	1	5566	5566		57.811	0	1	62495000			60509	8432	49923	49968	66285	66285					0.12753745813745354
VKRAKLIHAM	10	Unmodified	_VKRAKLIHAM_					0	0	0			REV__ENSG00000145632|ENST00000274289|PLK2	REV__ENSG00000145632|ENST00000274289|PLK2	MULTI-MSMS	OvCa9_classI_Rep2	2	583.8588256835938	2	583.86316	1165.71177	-4.259	-0.0024867	-3.0218	-0.0017643	-7.2808	-0.004251	583.8612282732444	154.9	1.2136	154.67	154.34	155.56	-0.22696					82	33	4	0	0	0	0.81992	1	15772	15772		16.473	1.6083	1	148650	+		60510	19972	49924	49969	66286	66286					0.13554025787152568
VKRALLLLVP	10	Unmodified	_VKRALLLLVP_					0	0	0		ENSG00000109736|ENST00000355443|MFSD10;ENST00000514031.5_1_4:2932567-2933551:-|nuORF	ENSG00000109736|ENST00000355443|MFSD10	ENSG00000109736|ENST00000355443|MFSD10	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.288330078125	2	561.392077	1120.7696	1.1336	0.00063642	-2.0296	-0.0011394	-0.89593	-0.00050297	561.390874148175	160.89	0.6539	160.89	160.61	161.26	0					20	12	2	0	0	0	0.027302	1	18866	18866		3.41	0	1	23857			60511	2730	49925	49970	66287	66287					0.21404610984222927
VKRDIITIN	9	Unmodified	_VKRDIITIN_					0	0	0			REV__nc|ENSG00000145649|P12544-2|GZMA	REV__nc|ENSG00000145649|P12544-2|GZMA	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.7743530273438	2	536.329673	1070.64479	-1.1922	-0.00063941	-0.4936	-0.00026473	-1.6858	-0.00090414	536.3293607021229	64.144	0.40605	64.144	64.011	64.417	0					18	9	3	0	0	0	0.027255	1	5809	5809		72.879	3.2516	1	457630	+		60512	19973	49926	49971	66288	66288					0.1122969377706795
VKREGRLLPGN	11	Unmodified	_VKREGRLLPGN_					0	0	0		nc|ENSG00000173193|Q460N5-4|PARP14;ENSG00000173193|ENST00000474629|PARP14;nc|ENSG00000173193|Q460N5-1|PARP14;nc|ENSG00000173193|Q460N5-3|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	nc|ENSG00000173193|Q460N5-4|PARP14	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8682861328125	2	619.870028	1237.7255	-3.1788	-0.0019704	2.28	0.0014133	-0.89873	-0.00055709	619.8711859647292	147.21	3.9856	146.98	144.83	148.82	-0.22696					207	79	4	0	0	0	0.72466	1	14880	14880		19.997	0	1	163200			60513	7356	49927	49972	66289	66289					0.11614974819940471
VKRFFFEEII	10	Unmodified	_VKRFFFEEII_					0	0	0			REV__tr|A0A553SUH6|A0A553SUH6_NIACICPBPfamilyintramembranemetalloproteaseOS=NialliacirculansOX=1397GN=CEQ21_07045PE=4SV=1	REV__tr|A0A553SUH6|A0A553SUH6_NIACICPBPfamilyintramembranemetalloproteaseOS=NialliacirculansOX=1397GN=CEQ21_07045PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	443.268798828125	3	443.251813	1326.73361	-1.1781	-0.00052218	3.571	0.0015828	2.3929	0.0010607	443.25338405804825	44.2	0.95084	41.193	40.744	41.695	-3.0074					40	18	3	0	0	0	0.027001	1	2204	2204		21.686	1.3707	1	177000	+		60514	31079	49928	49973	66290	66290					0.08331109016717164
VKRFLIYL	8	Unmodified	_VKRFLIYL_					0	0	0			REV__ENST00000366600.7_1_1:235622034-235634192:-|nuORF	REV__ENST00000366600.7_1_1:235622034-235634192:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.315185546875	2	526.33677	1050.65899	0.14494	7.6289E-05	2.3022	0.0012117	2.4471	0.001288	526.3380825336423	124.25	0.44388	124.02	123.83	124.27	-0.23193					13	8	2	0	0	0	0.028476	1	12065	12065		21.702	7.0382	1	11729	+		60515	24880	49929	49974	66291	66291					0.1356839099598801
VKRFSYEVS	9	Unmodified	_VKRFSYEVS_					0	0	0			REV__ENSG00000220008|ENST00000698372|LINGO3	REV__ENSG00000220008|ENST00000698372|LINGO3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	558.3514404296875	2	557.798206	1113.58186	0.38044	0.00021221	-1.1098	-0.00061903	-0.72933	-0.00040682	557.7975213907073	82.978	0.9752	80.295	79.979	80.954	-2.6829					22	19	2	0	0	0	0.027455	1	6956	6956		51.335	0	1	71049	+		60516	23334	49930	49975	66292	66292					0.02961127988987755
VKRGPPPRS	9	Unmodified	_VKRGPPPRS_					0	0	0		nc|ENSG00000147274|P38159-2|RBMX;ENSG00000213516|ENST00000652648|RBMXL1;ENSG00000147274|ENST00000320676|RBMX	nc|ENSG00000147274|P38159-2|RBMX	nc|ENSG00000147274|P38159-2|RBMX	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.2861633300781	2	497.30125	992.587947	1.6494	0.00082023	-2.9705	-0.0014772	-1.3211	-0.00065698	497.299506798486	77.892	0.29641	77.892	77.757	78.053	0					11	6	2	0	0	0	0.027462	1	7895	7895		37.159	3.6435	1	299560			60517	5348	49931	49976	66293	66293					0.0913569101118128
VKRIYRLWMFY	11	Unmodified	_VKRIYRLWMFY_					0	0	0		nc|ENSG00000227500|Q969E2-3|SCAMP4;ENST00000489554.1_1_19:1905413-1918987:+|nuORF;ENST00000452128.6_1_19:1905392-1918990:+|nuORF;nc|ENSG00000227500|Q969E2-2|SCAMP4;ENSG00000227500|ENST00000316097|SCAMP4	nc|ENSG00000227500|Q969E2-3|SCAMP4	nc|ENSG00000227500|Q969E2-3|SCAMP4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.2756958007812	3	525.626997	1573.85916	-2.2118	-0.0011626	1.0215	0.00053695	-1.1903	-0.00062564	525.6276261221027	50.217	0.67635	47.076	46.82	47.496	-3.1416					16	12	2	0	0	0	0.026497	1	2876	2876		6.001	2.7897	1	33458			60518	9278	49932	49977	66294	66294					0.09518497601266063
VKRKKEQPP	9	Unmodified	_VKRKKEQPP_					0	0	0			REV__ENST00000513666.5_1_5:96073558-96090478:+|nuORF	REV__ENST00000513666.5_1_5:96073558-96090478:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.3026733398438	2	555.343115	1108.67168	-0.065621	-3.6442E-05	-0.74647	-0.00041455	-0.81209	-0.00045099	555.3427448552947	74.215	1.8195	70.984	70.192	72.012	-3.2308					73	37	3	0	0	0	0.027455	1	5879	5879		42.396	0	1	352080	+		60519	20322	49933	49978	66295	66295					0.12168802388214317
VKRKQGKV	8	Unmodified	_VKRKQGKV_					0	0	0			REV__ENSG00000136807|ENST00000373264|CDK9	REV__ENSG00000136807|ENST00000373264|CDK9	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.7360534667969	2	471.813993	941.613434	-0.61403	-0.00028971	0.66774	0.00031505	0.05371	2.5341E-05	471.8141300824489	37.508	0.64271	37.508	37.298	37.94	0					23	13	3	0	0	0	0.028476	1	2065	2065		33.516	0	1	441030	+		60520	19403	49934	49979	66296	66296					0.14029165533611376
VKRLEQIP	8	Unmodified	_VKRLEQIP_					0	0	0			REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L	REV__nc|ENSG00000169607|Q8IYA6-3|CKAP2L	MULTI-MSMS	OvCa9_classI_Rep2	2	491.8049621582031	2	491.805834	981.597115	-0.58237	-0.00028641	0.39596	0.00019474	-0.18641	-9.1676E-05	491.8059066811213	50.582	1.7337	47.788	47.331	49.065	-2.794					87	34	4	0	0	0	0.71369	1	3294	3294		40.573	0	1	434780	+		60521	21473	49935	49980	66297	66297					0.10558039576847023
VKRLSLSII	9	Unmodified	_VKRLSLSII_					0	0	0		tr|A0A7D6ZXA4|A0A7D6ZXA4_9CLOTAscorbate-specificPTSsystemEIIAcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11260PE=4SV=1	tr|A0A7D6ZXA4|A0A7D6ZXA4_9CLOTAscorbate-specificPTSsystemEIIAcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11260PE=4SV=1	tr|A0A7D6ZXA4|A0A7D6ZXA4_9CLOTAscorbate-specificPTSsystemEIIAcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11260PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.8035888671875	2	514.844959	1027.67537	-0.65971	-0.00033965	0.85328	0.00043931	0.19358	9.9663E-05	514.8452961003827	94.785	1.2017	92.316	92.01	93.211	-2.4685					37	23	2	0	0	0	0.027462	1	8392	8392		21.96	10.449	1	57314			60522	35871	49936	49981	66298	66298					0.16263472162086146
VKRPPLFW	8	Unmodified	_VKRPPLFW_					0	0	0			REV__HERVH-int_dup2924|chr7:120779458-120782483:-|3.6914275035513295|0.0201601709888603|7.52|415.0|136|2|anti-sense	REV__HERVH-int_dup2924|chr7:120779458-120782483:-|3.6914275035513295|0.0201601709888603|7.52|415.0|136|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	521.8130493164062	2	521.813462	1041.61237	0.66684	0.00034797	-1.4547	-0.00075908	-0.78785	-0.00041111	521.8125550496435	68.201	4.7433	65.386	65.063	69.806	-2.8144					153	94	3	0	0	0	0.72922	1	2971	2971		37.028	10.336	1	529900	+		60523	28224	49937	49982	66299	66299					0.09322951164699589
VKRQPLWTLV	10	Unmodified	_VKRQPLWTLV_					0	0	0		ENSG00000144452|ENST00000272895|ABCA12;ABCA12|p.L901Ffs*6|1|0.06|ENSG00000144452|chr2:215001718-215001719|-/G|frameshift_variant;ABCA12|p.H1013Tfs*31|1|0.35|ENSG00000144452|chr2:215000844-215000847|TGTG/-|frameshift_variant	ENSG00000144452|ENST00000272895|ABCA12	ENSG00000144452|ENST00000272895|ABCA12	MULTI-SECPEP	OvCa9_classI_Rep4_	4	413.2276611328125	3	413.923919	1238.74993	0.34206	0.00014159	-3.8498	-0.0015935	-3.5078	-0.0014519	413.922351368244	59.123	1.5364	55.731	55.35	56.886	-3.392					87	30	5	0	0	0	0.027142	1	4029	4029		27.047	0	1	700600			60524	5152	49938	49983	66300	66300					0.14010234973443403
VKRRRRWYFRV	11	Unmodified	_VKRRRRWYFRV_					0	0	0		ENST00000181839.8_1_7:39989715-39990237:+|nuORF	ENST00000181839.8_1_7:39989715-39990237:+|nuORF	ENST00000181839.8_1_7:39989715-39990237:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	406.19793701171875	4	406.247018	1620.95897	0.78091	0.00031724	2.4546	0.00099718	3.2355	0.0013144	406.2473443868878	48.271	0.17235	48.271	48.16	48.332	0					5	3	2	0	0	0	0.026488	1	3520	3520		6.3209	2.9122	1	87161			60525	9645	49939	49984	66301	66301					0.17332496050084956
VKRSETPI	8	Unmodified	_VKRSETPI_					0	0	0		ENST00000344626.8_3_19:11071760-11094916:+|nuORF	ENST00000344626.8_3_19:11071760-11094916:+|nuORF	ENST00000344626.8_3_19:11071760-11094916:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	465.27545166015625	2	465.274367	928.53418	-0.2702	-0.00012572	0.091392	4.2522E-05	-0.17881	-8.3197E-05	465.27433808649687	63.669	1.579	63.669	63.376	64.955	0					78	38	5	0	0	0	0.04514	2	5758	5731;5758		167.82	12.428	1	16432000			60526	10612	49940	49985	66302;66303	66303					0.06705473788792915
VKRSRSLSP	9	Unmodified	_VKRSRSLSP_					0	0	0		nc|ENSG00000044459|Q9NXG0|CNTLN;ENSG00000044459|ENST00000380647|CNTLN;CNTLN|p.K1206Sfs*15|1|0.3|ENSG00000044459|chr9:17466063-17466063|A/-|frameshift_variant	nc|ENSG00000044459|Q9NXG0|CNTLN	nc|ENSG00000044459|Q9NXG0|CNTLN	MULTI-MSMS	OvCa9_classI_Rep2	2	515.3109130859375	2	515.311815	1028.60908	-2.0827	-0.0010732	1.7149	0.00088368	-0.36786	-0.00018956	515.312623228854	35.485	1.3896	32.775	32.503	33.893	-2.7097					66	27	3	0	0	0	0.42676	2	1432	1432;1443		49.442	0	1	694720			60527	1133	49941	49986	66304;66305	66304					0.09591656320048969
VKRVHLLM	8	Unmodified	_VKRVHLLM_					0	0	0			REV__nc|ENSG00000183091|P20929-4|NEB	REV__nc|ENSG00000183091|P20929-4|NEB	MSMS	OvCa99_classI_Rep5	1	498.3137512207031	2	498.312772	994.610991	NaN	NaN	NaN	NaN	NaN	NaN	NaN	85.475	1	85.475	84.975	85.975	0								0	0	0	0.30129	1	8972	8972		44.531	5.7249	1		+		60528	22341	49942	49987	66306	66306					0.1134699380429538
VKRVIGIP	8	Unmodified	_VKRVIGIP_					0	0	0		tr|A0A553SFS8|A0A553SFS8_NIACISignalpeptidaseIOS=NialliacirculansOX=1397GN=lepBPE=3SV=1	tr|A0A553SFS8|A0A553SFS8_NIACISignalpeptidaseIOS=NialliacirculansOX=1397GN=lepBPE=3SV=1	tr|A0A553SFS8|A0A553SFS8_NIACISignalpeptidaseIOS=NialliacirculansOX=1397GN=lepBPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	441.30169677734375	2	441.300188	880.585822	0.96708	0.00042677	-1.0695	-0.00047196	-0.1024	-4.5189E-05	441.2996001374922	70.51	1.3015	70.51	70.246	71.548	0					65	32	3	0	0	0	0.52992	1	6778	6778		74.517	3.1387	1	9691500			60529	33071	49943	49988	66307	66307					0.14075262273365752
VKRVKPSL	8	Unmodified	_VKRVKPSL_					0	0	0			REV__ENST00000402913.2_1_X:26704220-26705692:+|nuORF	REV__ENST00000402913.2_1_X:26704220-26705692:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	463.81231689453125	2	463.810919	925.607286	-0.57347	-0.00026598	0.11312	5.2468E-05	-0.46035	-0.00021351	463.81086781731744	61.496	1.3407	61.496	61.2	62.541	0					71	31	4	0	0	0	0.60331	1	5442	5442		63.306	0	1	8632100	+		60530	25422	49944	49989	66308	66308					0.1415064730207405
VKRWILDPQP	10	Unmodified	_VKRWILDPQP_					0	0	0		ENST00000301454.8_1_19:6441086-6441584:-|nuORF	ENST00000301454.8_1_19:6441086-6441584:-|nuORF	ENST00000301454.8_1_19:6441086-6441584:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	626.3619995117188	2	626.364047	1250.71354	0.91603	0.00057377	-4.0591	-0.0025425	-3.143	-0.0019687	626.3614117570846	35.259	1.4998	32.41	32.139	33.639	-2.849					82	29	4	0	0	0	0.74374	1	1157	1157		25.574	0.44807	1	384260			60531	10187	49945	49990	66309	66309					0.09821358076760589
VKRWKKQL	8	Unmodified	_VKRWKKQL_					0	0	0			REV__ENST00000430841.6_1_6:127652154-127664493:-|nuORF	REV__ENST00000430841.6_1_6:127652154-127664493:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.796630859375	2	543.350743	1084.68693	0.99064	0.00053826	3.7006	0.0020107	4.6912	0.002549	543.35265017036	156.42	0.80489	156.42	156.14	156.95	0					30	15	3	0	0	0	0.028476	1	18379	18379		25.45	6.0902	1	147890	+		60532	25716	49946	49991	66310	66310					0.1479771397607692
VKRYNEFSI	9	Unmodified	_VKRYNEFSI_					0	0	0			REV__ENSG00000101782|ENST00000339486|RIOK3	REV__ENSG00000101782|ENST00000339486|RIOK3	MULTI-MSMS	OvCa9_classI_Rep2	2	578.3099365234375	2	578.31148	1154.60841	-3.4092	-0.0019716	1.3378	0.00077367	-2.0714	-0.0011979	578.3120607814013	148.81	1.2534	148.59	148.22	149.47	-0.22697					59	24	4	0	0	0	0.6959	1	15060	15060		19.36	0.25645	1	94207	+		60533	17518	49947	49992	66311	66311					0.03728816880334307
VKSIQGKLD	9	Unmodified	_VKSIQGKLD_					0	0	0		nc|ENSG00000134160|Q7Z4N2-5|TRPM1;nc|ENSG00000134160|Q7Z4N2-2|TRPM1;nc|ENSG00000134160|Q7Z4N2-3|TRPM1;nc|ENSG00000134160|Q7Z4N2|TRPM1;ENSG00000134160|ENST00000256552|TRPM1	nc|ENSG00000134160|Q7Z4N2-5|TRPM1	nc|ENSG00000134160|Q7Z4N2-5|TRPM1	MULTI-MSMS	OvCa9_classI_Rep2	2	494.29412841796875	2	494.295299	986.576045	1.7975	0.0008885	-2.2609	-0.0011176	-0.46343	-0.00022907	494.2941466087284	90.898	1.7806	89.662	88.598	90.379	-1.2355					117	34	4	0	0	0	0.3249	1	8077	8077		60.118	0	1	1147000			60534	4264	49948	49993	66312	66312					0.08222029477337855
VKSIREKI	8	Unmodified	_VKSIREKI_					0	0	0		ENSG00000172817|ENST00000310193|CYP7B1;CYP7B1|p.T427Ifs*44|1|0.25|ENSG00000172817|chr8:64596882-64596883|GG/-|frameshift_variant	ENSG00000172817|ENST00000310193|CYP7B1	ENSG00000172817|ENST00000310193|CYP7B1	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.7955017089844	2	486.813659	971.612765	2.4957	0.0012149	-0.98131	-0.00047772	1.5143	0.00073721	486.8130268873797	75.193	0.40985	75.193	74.92	75.33	0					17	9	3	0	0	0	0.028476	1	7454	7454		40.573	0	1	291780			60535	704	49949	49994	66313	66313					0.12582326093888696
VKSKESISN	9	Unmodified	_VKSKESISN_					0	0	0			REV__nc|ENSG00000166669|Q5U623-2|ATF7IP2	REV__nc|ENSG00000166669|Q5U623-2|ATF7IP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.79449462890625	2	496.274564	990.534574	-0.46086	-0.00022871	1.915	0.00095036	1.4541	0.00072165	496.2757112424268	53.075	0.39095	53.075	52.956	53.347	0					10	8	2	0	0	0	0.027433	1	4189	4189		45.972	0	1	182750	+		60536	21212	49950	49995	66314	66314					0.038928487179987314
VKSKNVVPQ	9	Unmodified	_VKSKNVVPQ_					0	0	0			REV__ENSG00000088305|ENST00000328111|DNMT3B	REV__ENSG00000088305|ENST00000328111|DNMT3B	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.7940979003906	2	499.803291	997.59203	-1.3523	-0.0006759	1.2794	0.00063945	-0.072941	-3.6456E-05	499.80384385868405	85.2	1.8889	82.98	82.348	84.237	-2.2204					74	37	4	0	0	0	0.027462	1	5095	5095		35.152	12.11	1	563040	+		60537	17176	49951	49996	66315	66315					0.09313735714226823
VKSKNVVPQ	9	Unmodified	_VKSKNVVPQ_					0	0	0			REV__ENSG00000088305|ENST00000328111|DNMT3B	REV__ENSG00000088305|ENST00000328111|DNMT3B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	499.803291	997.59203	-1.4061	-0.00070278	1.1859	0.0005927	-0.22025	-0.00011008	499.8037916136731	84.318	1.5223	82.772	82.223	83.745	-1.5462	-0.10732	-1.4353E-05	NaN	28.081	68	29	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	302540	+		60538	17176	49951	49996							0.09313735714226823
VKSKVYLIA	9	Unmodified	_VKSKVYLIA_					0	0	0		CAPZA3|p.E149V|1|0.09|ENSG00000177938|chr12:18738714-18738714|A/T|missense_variant	CAPZA3|p.E149V|1|0.09|ENSG00000177938|chr12:18738714-18738714|A/T|missense_variant	CAPZA3|p.E149V|1|0.09|ENSG00000177938|chr12:18738714-18738714|A/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	511.3101501464844	2	510.826235	1019.63792	-1.2081	-0.00061715	-1.9642	-0.0010034	-3.1724	-0.0016205	510.8252598879849	53.338	0.69375	50.524	50.231	50.925	-2.8139					21	13	2	0	0	0	0.027462	1	3645	3645		24.203	5.8783	1	15277			60539	184	49952	49997	66316	66316					0.12888380896458784
VKSPCRKGLGL	11	Unmodified	_VKSPCRKGLGL_					0	0	0			REV__nc|ENSG00000198216|Q15878-2|CACNA1E	REV__nc|ENSG00000198216|Q15878-2|CACNA1E	MULTI-MSMS	OvCa99_classI_Rep5	1	579.8271484375	2	579.3448	1156.67505	0.246	0.00014252	-4.4029	-0.0025508	-4.1569	-0.0024083	579.842763234047	160.4	0.55214	160.4	160.21	160.76	0					14	10	2	0	0	0	0.68757	1	18806	18806		33.922	2.3918	1	77610	+		60540	23002	49953	49998	66317	66317					0.10297729170588354
VKSPHLRKASA	11	Unmodified	_VKSPHLRKASA_					0	0	0		ENST00000510003.5_1_5:121726829-121776497:+|nuORF;nc|ENSG00000064692|Q9Y6H5-6|SNCAIP;nc|ENSG00000064692|Q9Y6H5-4|SNCAIP;ENSG00000064692|ENST00000261368|SNCAIP;nc|ENSG00000064692|Q9Y6H5-3|SNCAIP	ENST00000510003.5_1_5:121726829-121776497:+|nuORF	ENST00000510003.5_1_5:121726829-121776497:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	597.357177734375	2	597.359296	1192.70404	-5.052	-0.0030179	4.0389	0.0024127	-1.0131	-0.00060517	597.3615454958483	157.14	0.96848	155.97	155.65	156.62	-1.1707					64	22	4	0	0	0	0.72324	1	13585	13585		21.686	1.689	1	132000			60541	1304	49954	49999	66318	66318					0.11539589791232174
VKSPLHTISDN	11	Unmodified	_VKSPLHTISDN_					0	0	0			REV__ENST00000558173.5_1_15:45047145-45048685:+|nuORF	REV__ENST00000558173.5_1_15:45047145-45048685:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	606.279052734375	2	605.824952	1209.63535	1.605	0.00097235	-1.9459	-0.0011789	-0.34086	-0.0002065	605.8243733542831	109.92	1.2511	109.92	109.19	110.45	0					39	27	2	0	0	0	0.025418	1	12450	12450		32.751	0	1	82968	+		60542	22540	49955	50000	66319	66319					0.0389188070084856
VKSPVQVIL	9	Unmodified	_VKSPVQVIL_					0	0	0		nc|ENSG00000188807|Q5SNT2-2|TMEM201;ENSG00000188807|ENST00000340381|TMEM201	nc|ENSG00000188807|Q5SNT2-2|TMEM201	nc|ENSG00000188807|Q5SNT2-2|TMEM201	MULTI-SECPEP	OvCa9_classI_Rep2	2	491.7995300292969	2	491.81841	981.622267	0.074366	3.6575E-05	1.3132	0.00064583	1.3875	0.00068241	491.81880198179533	104.32	2.284	103.75	103.32	105.61	-0.57639					79	45	2	0	0	0	0.027461	1	9880	9880		40.778	0	1	48282			60543	8504	49956	50001	66320	66320					0.1307209437942447
VKSRLPKAL	9	Unmodified	_VKSRLPKAL_					0	0	0		PPM1L|p.E145K|1|0.07|ENSG00000163590|chr3:160961769-160961769|G/A|missense_variant	PPM1L|p.E145K|1|0.07|ENSG00000163590|chr3:160961769-160961769|G/A|missense_variant	PPM1L|p.E145K|1|0.07|ENSG00000163590|chr3:160961769-160961769|G/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.32537841796875	2	506.337301	1010.66005	-1.2002	-0.00060771	2.2823	0.0011556	1.0821	0.0005479	506.33845722619435	76.08	0.25472	73.709	73.518	73.773	-2.3715					5	4	2	0	0	0	0.027462	1	3872	3872		35.618	0	1	9054.8			60544	15515	49957	50002	66321	66321					0.15514605364876388
VKSSIWLLLL	10	Unmodified	_VKSSIWLLLL_					0	0	0			REV__ENST00000542077.5_1_1:212238288-212240202:+|nuORF	REV__ENST00000542077.5_1_1:212238288-212240202:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	586.3805541992188	2	586.376092	1170.73763	0.27539	0.00016148	2.7747	0.001627	3.0501	0.0017885	586.377547850614	161.87	1.2169	161.87	161.26	162.48	0					63	23	3	0	0	0	0.52439	1	19017	19017		51.193	0	1	183130	+		60545	27380	49958	50003	66322	66322					0.15909198510439637
VKSSYRVE	8	Unmodified	_VKSSYRVE_					0	0	0		tr|A0A553SJJ2|A0A553SJJ2_NIACIHomoserinedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16790PE=3SV=1	tr|A0A553SJJ2|A0A553SJJ2_NIACIHomoserinedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16790PE=3SV=1	tr|A0A553SJJ2|A0A553SJJ2_NIACIHomoserinedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_16790PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.2696838378906	2	484.263999	966.513445	-1.1678	-0.00056554	1.0695	0.00051794	-0.09828	-4.7594E-05	484.2644273014387	87.448	1.2048	84.821	84.349	85.554	-2.6269					38	23	3	0	0	0	0.028476	1	7431	7431		17.365	0	1	103130			60546	33510	49959	50004	66323	66323					0.028848834091377284
VKSTAYLSPQ	10	Unmodified	_VKSTAYLSPQ_					0	0	0		ENSG00000168404|ENST00000308807|MLKL;ENST00000575695.5_1_16:74709220-74709647:-|nuORF;ENST00000570846.1_1_16:74709401-74709647:-|nuORF	ENSG00000168404|ENST00000308807|MLKL	ENSG00000168404|ENST00000308807|MLKL	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.8155517578125	2	547.298039	1092.58152	2.1336	0.0011677	-0.48629	-0.00026614	1.6474	0.0009016	547.297695088243	82.648	0.72778	82.648	82.307	83.035	0					47	16	4	0	0	0	0.026666	1	8536	8536		59.931	23.484	1	1275800			60547	6904	49960	50005	66324	66324					0.038937082691290925
VKSTPAGPLL	10	Unmodified	_VKSTPAGPLL_					0	0	0		ENST00000400331.9_1_7:20199405-20199441:-|nuORF	ENST00000400331.9_1_7:20199405-20199441:-|nuORF	ENST00000400331.9_1_7:20199405-20199441:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	491.7994079589844	2	491.800217	981.585882	0.015139	7.4454E-06	-0.71075	-0.00034955	-0.69561	-0.0003421	491.79978875845774	107.24	3.4509	105.98	105.67	109.12	-1.267					161	66	5	0	0	0	0.48398	1	7664	7664		56.434	1.6575	1	2343100			60548	11406	49961	50006	66325	66325					0.09435217482700864
VKTAQKVHRTA	11	Unmodified	_VKTAQKVHRTA_					0	0	0		ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8699340820312	2	619.870028	1237.7255	-4.2915	-0.0026601	3.7439	0.0023207	-0.54759	-0.00033943	619.871941810291	154.44	0.79832	152.99	152.59	153.38	-1.4517					35	20	2	0	0	0	0.72491	1	15268	15268		16.717	1.0756	1	27339			60549	5345	49962	50007	66326	66326					0.11614974819917734
VKTAQKVHRTA	11	Unmodified	_VKTAQKVHRTA_					0	0	0		ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	ENSG00000147251|ENST00000276202|DOCK11	MULTI-MATCH	OvCa9_classI_Rep3	3		2	619.870028	1237.7255	-4.369	-0.0027082	3.5587	0.0022059	-0.81036	-0.00050232	619.8718045903129	153.99	0.81076	152.98	152.66	153.47	-1.0076	-0.0046031	-0.00012692	NaN	16.717	28	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25748			60550	5345	49962	50007							0.11614974819917734
VKTARLPIQ	9	Unmodified	_VKTARLPIQ_					0	0	0		ENST00000488673.6_1_9:37763841-37777701:+|nuORF;nc|ENSG00000165275|Q6PF06-2|TRMT10B;nc|ENSG00000165275|Q6PF06-4|TRMT10B;nc|ENSG00000165275|Q6PF06-5|TRMT10B;ENSG00000165275|ENST00000297994|TRMT10B	ENST00000488673.6_1_9:37763841-37777701:+|nuORF	ENST00000488673.6_1_9:37763841-37777701:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.8162231445312	2	513.326934	1024.63931	0.0042391	2.1761E-06	-1.7858	-0.00091668	-1.7815	-0.00091451	513.3259185715602	75.544	0.91851	72.605	72.304	73.222	-2.9389					30	18	2	0	0	0	0.027447	1	6008	6008		47.657	4.0313	1	99635			60551	6544	49963	50008	66327	66327					0.12798014985219197
VKTEAVGRK	9	Unmodified	_VKTEAVGRK_					0	0	0		ENST00000602599.1_1_2:61245156-61245288:-|nuORF	ENST00000602599.1_1_2:61245156-61245288:-|nuORF	ENST00000602599.1_1_2:61245156-61245288:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	494.30084228515625	2	494.300916	986.587279	-3.5514	-0.0017554	3.5081	0.0017341	-0.043274	-2.139E-05	494.3024982316327	153.87	1.3713	153.64	153.28	154.65	-0.22696					70	29	4	0	0	0	0.70177	1	15709	15709		17.365	0.89182	1	375650			60552	14245	49964	50009	66328	66328					0.09344851571472645
VKTEDLSSNF	10	Unmodified	_VKTEDLSSNF_					0	0	0		TMEM48-MTMR12|1|fusion;TMEM48-MTMR12|2|fusion;nc|ENSG00000150712|Q9C0I1-3|MTMR12;nc|ENSG00000150712|Q9C0I1-2|MTMR12;ENSG00000150712|ENST00000382142|MTMR12	TMEM48-MTMR12|1|fusion	TMEM48-MTMR12|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.8031616210938	2	570.282586	1138.55062	0.98104	0.00055947	3.5312	0.0020138	4.5122	0.0025732	570.2847031949623	154.41	0.45219	154.41	154.22	154.67	0					16	8	3	0	0	0	0.026714	1	18102	18102		51.193	0	1	37620			60553	32967	49965	50010	66329	66329					-0.013114898357571292
VKTGIAEEL	9	Unmodified	_VKTGIAEEL_					0	0	0			REV__tr|A0A7D6VP12|A0A7D6VP12_9CLOTGTPaseHflXOS=ClostridiumintestinaleOX=36845GN=hflXPE=3SV=1	REV__tr|A0A7D6VP12|A0A7D6VP12_9CLOTGTPaseHflXOS=ClostridiumintestinaleOX=36845GN=hflXPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	480.2756652832031	2	480.274032	958.533512	0.4655	0.00022357	-0.58755	-0.00028219	-0.12205	-5.8617E-05	480.27360489569963	63.549	0.51542	63.549	63.257	63.773	0					35	12	4	0	0	0	0.070405	1	5740	5740		107.01	5.4068	1	5961900	+		60554	31222	49966	50011	66330	66330					0.05258634349092972
VKTILNVTLD	10	Unmodified	_VKTILNVTLD_					0	0	0		tr|A0A7D6VVM4|A0A7D6VVM4_9CLOTPhagemajorcapsidproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11800PE=4SV=1	tr|A0A7D6VVM4|A0A7D6VVM4_9CLOTPhagemajorcapsidproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11800PE=4SV=1	tr|A0A7D6VVM4|A0A7D6VVM4_9CLOTPhagemajorcapsidproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11800PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.3104248046875	2	558.337164	1114.65977	-0.19722	-0.00011011	-0.60991	-0.00034054	-0.80713	-0.00045065	558.3368711351543	71.619	0.53316	68.163	68.024	68.558	-3.4563					15	10	2	0	0	0	0.02709	1	5477	5477		16.717	0	1	28485			60555	35225	49967	50012	66331	66331					0.10703140854366211
VKTLSIFIFV	10	Unmodified	_VKTLSIFIFV_					0	0	0		ENST00000522590.1_1_6:154480965-154534056:-|nuORF	ENST00000522590.1_1_6:154480965-154534056:-|nuORF	ENST00000522590.1_1_6:154480965-154534056:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	583.8600463867188	2	583.862818	1165.71108	-5.3703	-0.0031355	-1.4651	-0.00085544	-6.8354	-0.0039909	583.8618452827162	155.36	1.2983	153.87	153.54	154.84	-1.4911					100	37	4	0	0	0	0.72319	1	15388	15388		27.882	2.3082	1	230740			60556	13139	49968	50013	66332	66332					0.1348550961906767
VKTLVQAQN	9	Unmodified	_VKTLVQAQN_					0	0	0		ENSG00000112486|ENST00000341935|CCR6	ENSG00000112486|ENST00000341935|CCR6	ENSG00000112486|ENST00000341935|CCR6	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.7754821777344	2	500.792924	999.571294	0.38688	0.00019374	0.14498	7.2605E-05	0.53186	0.00026635	500.79267515712985	72.525	0.544	72.525	72.333	72.877	0					21	13	2	0	0	0	0.027462	1	7061	7061		24.203	0	1	791740			60557	2908	49969	50014	66333	66333					0.07149145334551577
VKTNDFALLL	10	Unmodified	_VKTNDFALLL_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MULTI-MSMS	OvCa9_classI_Rep3	3	567.328369140625	2	567.331882	1132.64921	-2.6412	-0.0014984	-1.2123	-0.00068778	-3.8535	-0.0021862	567.3310908608092	141.92	3.9983	140.91	138.91	142.91	-1.0106					224	80	5	0	0	0	0.73378	1	11815	11815		26.693	0	1	127690	+		60558	19860	49970	50015	66334	66334					0.0881915819995811
VKTNRISDL	9	Unmodified	_VKTNRISDL_					0	0	0			REV__tr|A0A553SNW1|A0A553SNW1_NIACITranslationinitiationfactorIF-2OS=NialliacirculansOX=1397GN=infBPE=3SV=1	REV__tr|A0A553SNW1|A0A553SNW1_NIACITranslationinitiationfactorIF-2OS=NialliacirculansOX=1397GN=infBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	523.30419921875	2	523.303655	1044.59276	-2.1228	-0.0011108	2.0352	0.001065	-0.087543	-4.5811E-05	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.59259	1	11477	11477		32.812	3.6629	1	183010	+		60559	30463	49971	50016	66335	66335					0.07224530363282611
VKTPEIVLVP	10	Unmodified	_VKTPEIVLVP_					0	0	0			REV__ENSG00000180815|ENST00000338883|MAP3K15	REV__ENSG00000180815|ENST00000338883|MAP3K15	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.8433837890625	2	547.844625	1093.6747	-1.5321	-0.00083933	-3.3444	-0.0018322	-4.8765	-0.0026716	547.8426338015213	72.701	2.9908	69.305	68.424	71.415	-3.3961					128	61	3	0	0	0	0.72319	1	5593	5593		27.882	4.8398	1	1444700	+		60560	22198	49972	50017	66336	66336					0.13160632722360788
VKTPVPLKL	9	Unmodified	_VKTPVPLKL_					0	0	0		ENST00000361609.4_1_2:172950292-172950334:+|nuORF	ENST00000361609.4_1_2:172950292-172950334:+|nuORF	ENST00000361609.4_1_2:172950292-172950334:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	497.83685302734375	2	497.836603	993.658653	2.0463	0.0010187	-0.34466	-0.00017158	1.7017	0.00084715	497.83626575181387	113	0.72227	113	112.66	113.38	0					33	15	3	0	0	0	0.40667	1	12896	12896		51.335	0	1	742350			60561	10800	49973	50018	66337	66337					0.16156971276120657
VKTQERERRKR	11	Unmodified	_VKTQERERRKR_					0	0	0			REV__ENST00000425141.5_1_2:220498093-220506447:+|nuORF	REV__ENST00000425141.5_1_2:220498093-220506447:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	495.95806884765625	3	495.962207	1484.86479	-4.8163	-0.0023887	-2.3422	-0.0011617	-7.1585	-0.0035504	495.96094978154576	162.14	1.4092	161.91	160.94	162.35	-0.22696					77	27	3	0	0	0	0.72516	1	16527	16527		13.508	3.8618	1	83644	+		60562	18209	49974	50019	66338	66338					0.14175312437282628
VKTQERERRKR	11	Unmodified	_VKTQERERRKR_					0	0	0			REV__ENST00000425141.5_1_2:220498093-220506447:+|nuORF	REV__ENST00000425141.5_1_2:220498093-220506447:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	496.2933044433594	3	495.962207	1484.86479	-6.9468	-0.0034453	-0.084622	-4.1969E-05	-7.0314	-0.0034873	495.96210445138047	163.05	2.2058	161.66	160.17	162.38	-1.3926					163	48	5	0	0	0	0.72548	1	14170	14170		9.2118	2.8909	1	227040	+		60563	18209	49974	50019	66339	66339					0.14175312437282628
VKTQERERRKR	11	Unmodified	_VKTQERERRKR_					0	0	0			REV__ENST00000425141.5_1_2:220498093-220506447:+|nuORF	REV__ENST00000425141.5_1_2:220498093-220506447:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.9585876464844	3	495.962207	1484.86479	-6.4865	-0.003217	-0.53126	-0.00026348	-7.0177	-0.0034805	495.96187478588956	163.63	1.693	161.99	160.63	162.32	-1.6336					149	48	4	0	0	0	0.72545	2	16110	16110;16119		9.6461	0.80454	1	106460	+		60564	18209	49974	50019	66340;66341	66340					0.14175312437282628
VKTRLPLLQ	9	Unmodified	_VKTRLPLLQ_					0	0	0			REV__ENSG00000123213|ENST00000380985|NLN	REV__ENSG00000123213|ENST00000380985|NLN	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.3338623046875	2	534.350409	1066.68626	-0.92131	-0.0004923	0.39117	0.00020902	-0.53014	-0.00028328	534.3505040786	69.818	0.37332	69.818	69.632	70.005	0					13	8	2	0	0	0	0.027441	1	6643	6643		49.442	12.282	1	280780	+		60565	18631	49975	50020	66342	66342					0.15558874536372969
VKTTFSIEN	9	Unmodified	_VKTTFSIEN_					0	0	0			REV__nc|ENSG00000264058|Q8N1A0-2|KRT222	REV__nc|ENSG00000264058|Q8N1A0-2|KRT222	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.3201293945312	2	519.776939	1037.53933	-0.096669	-5.0246E-05	-0.14603	-7.5903E-05	-0.2427	-0.00012615	519.7767663288032	105.4	1.0482	104.97	104.7	105.75	-0.43642					34	20	3	0	0	0	0.027403	1	9813	9813		60.118	17.722	1	45751	+	+	60566	16221	49976	50021	66343	66343					0.022057328607616
VKTTGWFTL	9	Unmodified	_VKTTGWFTL_					0	0	0			REV__ENST00000503921.5_1_5:96133011-96143586:-|nuORF	REV__ENST00000503921.5_1_5:96133011-96143586:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	526.7944946289062	2	526.792392	1051.57023	0.61825	0.00032569	1.628	0.00085763	2.2463	0.0011833	526.7931501133561	139.72	2.4171	139.72	139.32	141.74	0					103	49	3	0	0	0	0.49652	1	16288	16288		42.864	7.7122	1	159380	+		60567	20972	49977	50022	66344	66344					0.046509309656585174
VKTTIITIPSK	11	Unmodified	_VKTTIITIPSK_					0	0	0			REV__nc|ENSG00000172534|P51610-2|HCFC1	REV__nc|ENSG00000172534|P51610-2|HCFC1	MULTI-SECPEP	OvCa9_classI_Rep3	3	600.8521728515625	2	600.881739	1199.74892	0.99548	0.00059817	-2.3226	-0.0013956	-1.3271	-0.00079745	600.8808009583473	83.673	0.22285	81.412	81.211	81.434	-2.261					6	4	2	0	0	0	0.025418	1	4778	4778		40.058	8.5284	1	18860	+		60568	21708	49978	50023	66345	66345					0.15703975813880788
VKTVVQLEGDN	11	Unmodified	_VKTVVQLEGDN_					0	0	0		nc|ENSG00000170325|Q9NQV6-6|PRDM10;ENSG00000163586|ENST00000295834|FABP1	nc|ENSG00000170325|Q9NQV6-6|PRDM10	nc|ENSG00000170325|Q9NQV6-6|PRDM10	MULTI-MSMS	OvCa9_classI_Rep4_	4	601.3177490234375	2	601.324785	1200.63502	-1.2994	-0.00078135	-3.8115	-0.0022919	-5.1109	-0.0030733	601.3224087879404	148.17	1.6513	146.74	145.78	147.43	-1.4351					68	32	3	0	0	0	0.7246	1	14574	14574		20.837	0.84038	1	37406			60569	15176	49979	50024	66346	66346					0.04272460980996584
VKTVVQLEGDN	11	Unmodified	_VKTVVQLEGDN_					0	0	0		nc|ENSG00000170325|Q9NQV6-6|PRDM10;ENSG00000163586|ENST00000295834|FABP1	nc|ENSG00000170325|Q9NQV6-6|PRDM10	nc|ENSG00000170325|Q9NQV6-6|PRDM10	MULTI-MATCH	OvCa9_classI_Rep3	3		2	601.324785	1200.63502	-1.8441	-0.0011089	-3.9498	-0.0023751	-5.794	-0.0034841	601.3227179485348	147.78	1.7469	146.83	145.7	147.45	-0.9512	0.047804	-0.00010508	NaN	20.837	74	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25868			60570	15176	49979	50024							0.04272460980996584
VKVAVREG	8	Unmodified	_VKVAVREG_					0	0	0			REV__ENST00000403332.2_1_6:129478670-129479855:-|nuORF	REV__ENST00000403332.2_1_6:129478670-129479855:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	429.26348876953125	2	429.263802	856.513051	-0.2469	-0.00010599	0.063722	2.7354E-05	-0.18318	-7.8633E-05	429.26374368244154	41.185	2.2742	38.205	37.606	39.88	-2.9804					97	43	4	0	0	0	0.6962	1	1832	1832		44.117	0	1	644380	+		60571	25426	49980	50025	66347	66347					0.0790550847995064
VKVEAPRRR	9	Unmodified	_VKVEAPRRR_					0	0	0			REV__ENST00000205402.9_1_7:107531628-107542186:+|nuORF	REV__ENST00000205402.9_1_7:107531628-107542186:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	556.8085327148438	2	555.846356	1109.67816	0.5793	0.000322	0.67984	0.00037788	1.2591	0.00069989	556.3480049788487	122.39	1.468	121.02	120.04	121.51	-1.3666					37	28	2	0	0	0	0.027462	1	11475	11475		42.396	17.877	1	8949.2	+		60572	23702	49981	50026	66348	66348					0.12770740339601616
VKVEAPRRR	9	Unmodified	_VKVEAPRRR_					0	0	0			REV__ENST00000205402.9_1_7:107531628-107542186:+|nuORF	REV__ENST00000205402.9_1_7:107531628-107542186:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	555.846356	1109.67816	0.8833	0.00049098	0.3249	0.00018059	1.2082	0.00067157	556.3479033225944	121.94	1.1003	120.91	120.48	121.58	-1.0286	-0.055283	-0.00019579	NaN	42.396	27	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10878	+		60573	23702	49981	50026							0.12770740339601616
VKVFCKNLS	9	Unmodified	_VKVFCKNLS_					0	0	0			REV__ENSG00000176165|ENST00000313071|FOXG1	REV__ENSG00000176165|ENST00000313071|FOXG1	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.8107299804688	2	519.294245	1036.57394	0.36048	0.0001872	-3.1543	-0.001638	-2.7938	-0.0014508	519.2925810165003	109.55	1.3356	109.37	109.17	110.5	-0.17237					43	26	2	0	0	0	0.027462	1	10267	10267		15.642	0	1	115850	+		60574	21935	49982	50027	66349	66349					0.057112774678671485
VKVFHQFSN	9	Unmodified	_VKVFHQFSN_					0	0	0		ENST00000311237.4_19:20578692-20592633:-|nuORF;ENSG00000256229|ENST00000335117|ZNF486	ENST00000311237.4_19:20578692-20592633:-|nuORF	ENST00000311237.4_19:20578692-20592633:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.808837890625	2	553.293091	1104.57163	0.49767	0.00027536	-0.17139	-9.4831E-05	0.32628	0.00018053	553.2936286594625	98.047	0.50328	95.669	95.368	95.871	-2.3786					14	9	2	0	0	0	0.027462	1	8722	8722		11.511	0	1	16026			60575	9464	49983	50028	66350	66350					0.023525650544115706
VKVFHQFSN	9	Unmodified	_VKVFHQFSN_					0	0	0		ENST00000311237.4_19:20578692-20592633:-|nuORF;ENSG00000256229|ENST00000335117|ZNF486	ENST00000311237.4_19:20578692-20592633:-|nuORF	ENST00000311237.4_19:20578692-20592633:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	553.293091	1104.57163	1.0153	0.00056177	-0.76144	-0.0004213	0.25389	0.00014047	553.2928869074362	96.682	0.44049	95.723	95.481	95.921	-0.95857	0.0018287	-0.00098386	NaN	16.473	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12111			60576	9464	49983	50028							0.023525650544115706
VKVFHQFSN	9	Unmodified	_VKVFHQFSN_					0	0	0		ENST00000311237.4_19:20578692-20592633:-|nuORF;ENSG00000256229|ENST00000335117|ZNF486	ENST00000311237.4_19:20578692-20592633:-|nuORF	ENST00000311237.4_19:20578692-20592633:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	553.293091	1104.57163	-1.012	-0.00055992	2.0519	0.0011353	1.0399	0.00057536	553.7954880569176	97.532	0.30065	95.772	95.517	95.818	-1.7595	0.050873	0.0021293	NaN	16.473	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18650			60577	9464	49983	50028							0.023525650544115706
VKVFSVVHS	9	Unmodified	_VKVFSVVHS_					0	0	0		nc|ENSG00000156414|Q8NDG6-2|TDRD9;ENSG00000156414|ENST00000409874|TDRD9	nc|ENSG00000156414|Q8NDG6-2|TDRD9	nc|ENSG00000156414|Q8NDG6-2|TDRD9	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2899475097656	2	501.292559	1000.57057	-1.4695	-0.00073667	-2.6975	-0.0013522	-4.167	-0.0020889	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.63422	1	11060	11060		27.882	3.3631	1	97838			60578	5838	49984	50029	66351	66351					0.07030350685522535
VKVGNCNTP	9	Unmodified	_VKVGNCNTP_					0	0	0		ENSG00000230124|ENST00000367595|ACBD6	ENSG00000230124|ENST00000367595|ACBD6	ENSG00000230124|ENST00000367595|ACBD6	MULTI-MSMS	OvCa9_classI_Rep2	2	466.2369079589844	2	466.236927	930.459301	0.31116	0.00014507	-0.31655	-0.00014759	-0.0053896	-2.5128E-06	466.23662450729495	43.901	2.5422	41.191	40.658	43.2	-2.7097					104	50	4	0	0	0	0.5811	1	2479	2479		34.173	2.2177	1	381230			60579	9286	49985	50030	66352	66352					-0.008710320140835393
VKVGRPPDP	9	Unmodified	_VKVGRPPDP_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa9_classI_Rep3	3	482.7838439941406	2	482.782359	963.550165	1.1629	0.00056142	2.6735	0.0012907	3.8364	0.0018521	482.7834710585416	120.81	2.5422	119.78	119.46	122	-1.0271					114	48	4	0	0	0	0.60342	1	9272	9272		31.53	1.6883	1	731330	+		60580	28942	49986	50031	66353	66353					0.06693180025695256
VKVGSQRL	8	Unmodified	_VKVGSQRL_					0	0	0			REV__nc|ENSG00000196159|Q6V0I7-3|FAT4;REV__nc|ENSG00000196159|Q6V0I7-2|FAT4	REV__nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.2933044433594	2	443.777077	885.5396	0.92954	0.00041251	-0.89437	-0.0003969	0.035174	1.5609E-05	443.77655593152366	56.854	0.30196	56.854	56.702	57.004	0					10	6	2	0	0	0	0.028476	1	4751	4751		37.159	12.956	1	334130	+		60581	22791;29073	49987	50032	66354	66354					0.09225197371267768
VKVKIGASWG	10	Unmodified	_VKVKIGASWG_					0	0	0		ENSG00000051341|ENST00000264233|POLQ;nc|ENSG00000051341|O75417-2|POLQ	ENSG00000051341|ENST00000264233|POLQ	ENSG00000051341|ENST00000264233|POLQ	MULTI-MSMS	OvCa99_classI_Rep5	1	522.8116455078125	2	522.813659	1043.61277	-1.0446	-0.00054611	-3.0146	-0.0015761	-4.0591	-0.0021222	522.8119901844366	25.414	1.1018	25.414	24.99	26.092	0					52	21	4	0	0	0	0.66721	1	558	558		34.173	5.023	1	970860			60582	1186	49988	50033	66355	66355					0.09270326093883341
VKVLDWVD	8	Unmodified	_VKVLDWVD_					0	0	0			REV__sp|P16800|CEP2_HCMVACytoplasmicenvelopmentprotein2OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL94PE=1SV=1	REV__sp|P16800|CEP2_HCMVACytoplasmicenvelopmentprotein2OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL94PE=1SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.289794921875	2	487.271293	972.528032	-1.1773	-0.00057366	0.48036	0.00023406	-0.69694	-0.0003396	487.2714559876378	96.915	0.87847	95.087	94.621	95.5	-1.8286					23	16	2	0	0	0	0.028476	1	6344	6344		37.159	0	1	13684	+		60583	29386	49989	50034	66356	66356					0.04066955557277652
VKVLIKERGY	10	Unmodified	_VKVLIKERGY_					0	0	0		nc|ENSG00000147124|P51814-4|ZNF41;nc|ENSG00000147124|P51814-8|ZNF41;nc|ENSG00000147124|P51814-7|ZNF41;ENSG00000147124|ENST00000684689|ZNF41;nc|ENSG00000147124|P51814-2|ZNF41;nc|ENSG00000147124|P51814-3|ZNF41;nc|ENSG00000147124|P51814-5|ZNF41;nc|ENSG00000147124|P51814|ZNF41	nc|ENSG00000147124|P51814-4|ZNF41	nc|ENSG00000147124|P51814-4|ZNF41	MULTI-MSMS	OvCa9_classI_Rep3	3	602.8737182617188	2	602.874248	1203.73394	2.2502	0.0013566	-2.7856	-0.0016794	-0.53541	-0.00032278	602.8725233476795	104.38	1.6621	102.94	102.6	104.27	-1.4347					105	31	5	0	0	0	0.47142	1	7260	7260		58.23	21.783	1	1606000			60584	5332	49990	50035	66357	66357					0.140225287365638
VKVLIKERGY	10	Unmodified	_VKVLIKERGY_					0	0	0		nc|ENSG00000147124|P51814-4|ZNF41;nc|ENSG00000147124|P51814-8|ZNF41;nc|ENSG00000147124|P51814-7|ZNF41;ENSG00000147124|ENST00000684689|ZNF41;nc|ENSG00000147124|P51814-2|ZNF41;nc|ENSG00000147124|P51814-3|ZNF41;nc|ENSG00000147124|P51814-5|ZNF41;nc|ENSG00000147124|P51814|ZNF41	nc|ENSG00000147124|P51814-4|ZNF41	nc|ENSG00000147124|P51814-4|ZNF41	MULTI-MSMS	OvCa9_classI_Rep4_	4	602.8741455078125	2	602.874248	1203.73394	0.39799	0.00023994	-0.97219	-0.00058611	-0.57421	-0.00034617	602.8736249948932	105.04	1.9216	103.03	102.69	104.61	-2.0161					116	37	5	0	0	0	0.49558	2	9519	9519;9557		54.776	1.8396	1	1590400			60585	5332	49990	50035	66358;66359	66358					0.140225287365638
VKVLRRGIV	9	Unmodified	_VKVLRRGIV_					0	0	0		ENST00000523936.5_1_8:56985761-56985797:-|nuORF	ENST00000523936.5_1_8:56985761-56985797:-|nuORF	ENST00000523936.5_1_8:56985761-56985797:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.30517578125	2	520.358568	1038.70258	-1.4171	-0.00073742	1.2367	0.00064353	-0.18043	-9.3888E-05	520.3587499425753	43.57	0.31475	40.562	40.378	40.693	-3.0074					6	5	2	0	0	0	0.027462	1	2102	2102		23.042	0	1	7501.2			60586	13159	49991	50036	66360	66360					0.1847800049313264
VKVMDLVPI	9	Oxidation (M)	_VKVM(Oxidation (M))DLVPI_		VKVM(1)DLVPI		VKVM(71)DLVPI	0	0	1			REV__tr|A0A553SP41|A0A553SP41_NIACISuccinate--CoAligase[ADP-forming]subunitalphaOS=NialliacirculansOX=1397GN=sucDPE=3SV=1	REV__tr|A0A553SP41|A0A553SP41_NIACISuccinate--CoAligase[ADP-forming]subunitalphaOS=NialliacirculansOX=1397GN=sucDPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.3062744140625	2	515.304278	1028.594	1.4607	0.00075269	0.33121	0.00017067	1.7919	0.00092336	515.3044060419797	118.72	0.61537	118.72	118.49	119.1	0					22	12	2	0	0	0	0.22961	1	13616	13616		71.296	19.96	1	79394	+		60587	30489	49992	50037	66361	66361		667			0.08085028407822392
VKVNEGGVF	9	Unmodified	_VKVNEGGVF_					0	0	0			REV__tr|A0A553SKE1|A0A553SKE1_NIACILargeribosomalsubunitproteinbL21OS=NialliacirculansOX=1397GN=rplUPE=3SV=1	REV__tr|A0A553SKE1|A0A553SKE1_NIACILargeribosomalsubunitproteinbL21OS=NialliacirculansOX=1397GN=rplUPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	475.2892150878906	2	474.761092	947.507631	-0.20149	-9.5661E-05	0.2024	9.609E-05	0.000902	4.2823E-07	474.76102250910316	95.573	1.2916	94.545	94.219	95.51	-1.0281					47	25	3	0	0	0	0.027462	1	8625	8625		53.351	29.829	1	63670	+		60588	30114	49993	50038	66362	66362					0.03177784897491165
VKVPGCIL	8	Unmodified	_VKVPGCIL_					0	0	0			REV__ENST00000467457.5_1_3:49053892-49055376:-|nuORF	REV__ENST00000467457.5_1_3:49053892-49055376:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.7439270019531	2	414.754224	827.493896	0.11827	4.9051E-05	0.49493	0.00020527	0.61319	0.00025432	414.75453764656265	39.59	0.59491	39.59	39.376	39.971	0					18	13	2	0	0	0	0.028476	1	2335	2335		46.766	0	1	84425	+		60589	22046	49994	50039	66363	66363					0.07324835864676515
VKVQNVYVP	9	Unmodified	_VKVQNVYVP_					0	0	0			REV__ENSG00000135312|ENST00000369947|HTR1B	REV__ENSG00000135312|ENST00000369947|HTR1B	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3030395507812	2	523.305667	1044.59678	-2.1227	-0.0011108	-1.8084	-0.00094634	-3.9311	-0.0020572	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.53957	1	11460	11460		38.806	8.3025	1	183010	+		60590	19271	49995	50040	66364	66364					0.07626619856978323
VKVSLTKGFQ	10	Unmodified	_VKVSLTKGFQ_					0	0	0			REV__ENST00000525751.5_1_1:40034389-40035574:-|nuORF	REV__ENST00000525751.5_1_1:40034389-40035574:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8302001953125	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.5675	1	11742	11742		45.972	13.16	1	308210	+		60591	17228	49996	50041	66365	66365					0.10094577919790026
VKVTVIVESK	10	Unmodified	_VKVTVIVESK_					0	0	0			REV__ENST00000480937.5_1_1:25678121-25683295:+|nuORF	REV__ENST00000480937.5_1_1:25678121-25683295:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3182373046875	2	551.347532	1100.68051	-0.59157	-0.00032616	0.53298	0.00029385	-0.058595	-3.2306E-05	551.3465073213226	53.192	0.17279	53.192	53.087	53.26	0					5	3	2	0	0	0	0.026891	1	4210	4210		24.519	3.5723	1	96150	+		60592	26469	49997	50042	66366	66366					0.1341973123403477
VKVVLDELE	9	Unmodified	_VKVVLDELE_					0	0	0		tr|A0A7D6ZTD2|A0A7D6ZTD2_9CLOTCyanophycinsynthetaseOS=ClostridiumintestinaleOX=36845GN=cphAPE=3SV=1	tr|A0A7D6ZTD2|A0A7D6ZTD2_9CLOTCyanophycinsynthetaseOS=ClostridiumintestinaleOX=36845GN=cphAPE=3SV=1	tr|A0A7D6ZTD2|A0A7D6ZTD2_9CLOTCyanophycinsynthetaseOS=ClostridiumintestinaleOX=36845GN=cphAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	522.3046875	2	522.30279	1042.59103	0.91988	0.00048046	1.2346	0.00064482	2.1545	0.0011253	522.3033291692852	147.13	0.78285	147.13	146.77	147.55	0					30	15	3	0	0	0	0.18193	1	17222	17222		79.451	9.8234	1	250050			60593	35752	49998	50043	66367	66367					0.0714347655466554
VKVVNVIALDP	11	Unmodified	_VKVVNVIALDP_					0	0	0			REV__ENST00000587366.1_1_18:55280911-55288994:-|nuORF	REV__ENST00000587366.1_1_18:55280911-55288994:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8583374023438	2	583.860806	1165.70706	-6.9005	-0.0040289	3.2924	0.0019223	-3.608	-0.0021066	583.8626216517176	154.95	1.1831	153.88	153.56	154.74	-1.073					81	29	4	0	0	0	0.72491	1	13291	13291		16.717	1.0756	1	200380	+		60594	27873	49999	50044	66368	66368					0.1308342012534922
VKVWPGSLPQ	10	Unmodified	_VKVWPGSLPQ_					0	0	0		ENST00000332549.7_1_2:102608419-102626165:+|nuORF	ENST00000332549.7_1_2:102608419-102626165:+|nuORF	ENST00000332549.7_1_2:102608419-102626165:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	555.8223266601562	2	555.818941	1109.62333	4.315	0.0023984	1.8397	0.0010225	6.1547	0.0034209	555.8198103416565	25.114	1.0176	22.405	22.261	23.279	-2.7097					54	22	4	0	0	0	0.55359	1	214	214		47.657	3.5405	1	302060			60595	10458	50000	50045	66369	66369					0.0729030874831551
VKVWVKEQKVQ	11	Unmodified	_VKVWVKEQKVQ_					0	0	0		JMJD1C|p.G987Efs*15|1|0.12|ENSG00000171988|chr10:63208709-63208709|C/-|frameshift_variant;ENSG00000171988|ENST00000399262|JMJD1C	JMJD1C|p.G987Efs*15|1|0.12|ENSG00000171988|chr10:63208709-63208709|C/-|frameshift_variant	JMJD1C|p.G987Efs*15|1|0.12|ENSG00000171988|chr10:63208709-63208709|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	457.606689453125	3	457.61	1369.80817	-6.2055	-0.0028397	2.1368	0.00097783	-4.0687	-0.0018619	457.6108688134911	157.03	3.4081	155.86	154.91	158.32	-1.1707					147	80	2	0	0	0	0.72528	1	13522	13522		11.932	0.29645	1	68588			60596	7256	50001	50046	66370	66370					0.13805871828071759
VKVWVKEQKVQ	11	Unmodified	_VKVWVKEQKVQ_					0	0	0		JMJD1C|p.G987Efs*15|1|0.12|ENSG00000171988|chr10:63208709-63208709|C/-|frameshift_variant;ENSG00000171988|ENST00000399262|JMJD1C	JMJD1C|p.G987Efs*15|1|0.12|ENSG00000171988|chr10:63208709-63208709|C/-|frameshift_variant	JMJD1C|p.G987Efs*15|1|0.12|ENSG00000171988|chr10:63208709-63208709|C/-|frameshift_variant	MSMS	OvCa9_classI_Rep4_	4	457.6078796386719	3	457.61	1369.80817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	157.47	1	155.92	155.42	156.42	-1.545								0	0	0	0.19474	1	15564	15564		15.921	0	1				60597	7256	50001	50046	66371	66371					0.13805871828071759
VKWLDGLDL	9	Unmodified	_VKWLDGLDL_					0	0	0			REV__ENST00000335730.6_1_18:44089558-44181581:-|nuORF	REV__ENST00000335730.6_1_18:44089558-44181581:-|nuORF	MSMS	OvCa99_classI_Rep5	1	529.8005981445312	2	529.797675	1057.5808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.35	1	137.35	136.85	137.85	0								0	0	0	0.16872	1	16020	16020		54.776	0	1		+		60598	21263	50002	50047	66372	66372					0.05430913620079991
VKYAKTLLP	9	Unmodified	_VKYAKTLLP_					0	0	0		tr|A0A553STD5|A0A553STD5_NIACI2-isopropylmalatesynthaseOS=NialliacirculansOX=1397GN=leuAPE=3SV=1	tr|A0A553STD5|A0A553STD5_NIACI2-isopropylmalatesynthaseOS=NialliacirculansOX=1397GN=leuAPE=3SV=1	tr|A0A553STD5|A0A553STD5_NIACI2-isopropylmalatesynthaseOS=NialliacirculansOX=1397GN=leuAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.3243408203125	2	516.826235	1031.63792	0.048308	2.4967E-05	0.10389	5.3692E-05	0.1522	7.8659E-05	516.8259592714085	83.854	0.48392	81.191	80.974	81.458	-2.6629					14	9	2	0	0	0	0.027462	1	7013	7013		45.972	8.1607	1	29324			60599	34475	50003	50048	66373	66373					0.12336380896454102
VKYFDAGDIPL	11	Unmodified	_VKYFDAGDIPL_					0	0	0		tr|A0A553SI50|A0A553SI50_NIACIAgmatinaseOS=NialliacirculansOX=1397GN=speBPE=3SV=1	tr|A0A553SI50|A0A553SI50_NIACIAgmatinaseOS=NialliacirculansOX=1397GN=speBPE=3SV=1	tr|A0A553SI50|A0A553SI50_NIACIAgmatinaseOS=NialliacirculansOX=1397GN=speBPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	413.219970703125	3	413.22029	1236.63904	0.70327	0.00029061	-2.8031	-0.0011583	-2.0998	-0.00086769	413.2190213728746	30.261	0.94416	30.261	29.986	30.93	0					36	18	4	0	0	0	0.66539	1	1148	1148		38.714	3.2184	1	329300			60600	33343	50004	50049	66374	66374					0.03018550474712356
VKYFVHYNWWN	11	Unmodified	_VKYFVHYNWWN_					0	0	0		ENST00000433352.1_1_X:64550801-64551062:-|nuORF	ENST00000433352.1_1_X:64550801-64551062:-|nuORF	ENST00000433352.1_1_X:64550801-64551062:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.8308715820312	3	519.254216	1554.74082	-0.27958	-0.00014517	3.6212	0.0018803	3.3417	0.0017352	519.5903484055594	62.7	0.44128	62.7	62.418	62.86	0					20	10	3	0	0	0	0.026364	1	5580	5580		13.508	2.9211	1	295090			60601	11830	50005	50050	66375	66375					-0.01436158382875874
VKYGIDGNF	9	Unmodified	_VKYGIDGNF_					0	0	0		tr|A0A7D6VVS5|A0A7D6VVS5_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13610PE=4SV=1	tr|A0A7D6VVS5|A0A7D6VVS5_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13610PE=4SV=1	tr|A0A7D6VVS5|A0A7D6VVS5_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13610PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.320068359375	2	506.758549	1011.50255	2.4458	0.0012394	-0.53422	-0.00027072	1.9116	0.00096873	506.75806646240306	84.423	0.37255	84.423	84.177	84.55	0					12	8	2	0	0	0	0.027462	1	8832	8832		34.173	14.813	1	181270			60602	35233	50006	50051	66376	66376					-0.002745189651477631
VKYHRKELY	9	Unmodified	_VKYHRKELY_					0	0	0			REV__ENST00000494957.5_1_X:134713813-134716222:+|nuORF	REV__ENST00000494957.5_1_X:134713813-134716222:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	619.3119506835938	2	618.348397	1234.68224	0.76386	0.00047233	4.4923	0.0027778	5.2562	0.0032502	618.3508741751798	153.65	1.1762	153.65	153	154.17	0					45	23	3	0	0	0	0.027462	1	17980	17980		40.778	5.5999	1	97408	+		60603	26737	50007	50052	66377	66377					0.07428785042657182
VKYLGQRLEK	10	Unmodified	_VKYLGQRLEK_					0	0	0			REV__ENSG00000181017|ENST00000641377|OR56B2P	REV__ENSG00000181017|ENST00000641377|OR56B2P	MULTI-SECPEP	OvCa99_classI_Rep5	1	617.320068359375	2	617.36933	1232.72411	1.0864	0.00067069	-4.3547	-0.0026885	-3.2684	-0.0020178	617.3667305453932	131.17	0.70677	131.17	130.96	131.67	0					23	14	3	0	0	0	0.026849	1	15275	15275		32.812	4.9302	1	96145	+		60604	22213	50008	50053	66378	66378					0.11705340731191427
VKYNDLHEG	9	Unmodified	_VKYNDLHEG_					0	0	0			REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1	REV__nc|ENSG00000158683|Q8TDX9-2|PKD1L1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.2857666015625	2	537.764363	1073.51417	2.6123	0.0014048	4.0065	0.0021545	6.6187	0.0035593	537.7659527264976	106.26	0.35088	106.26	106.1	106.45	0					10	7	2	0	0	0	0.027418	1	11940	11940		71.877	21.853	1	102820	+		60605	20578	50009	50054	66379	66379					-0.019643219418185254
VKYPMSEFF	9	Unmodified	_VKYPMSEFF_					0	0	0			REV__ENST00000579558.5_1_17:18243959-18259295:-|nuORF	REV__ENST00000579558.5_1_17:18243959-18259295:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.798828125	2	574.27826	1146.54197	2.4239	0.001392	0.12607	7.2398E-05	2.55	0.0014644	574.2774616046075	115.75	0.14036	115.75	115.68	115.82	0					4	2	2	0	0	0	0.027462	1	13221	13221		20.947	0	1	27776	+		60606	21979	50010	50055	66380	66380					-0.02544135005928183
VKYTSEQAN	9	Unmodified	_VKYTSEQAN_					0	0	0			REV__nc|ENSG00000060749|Q2KHR3|QSER1	REV__nc|ENSG00000060749|Q2KHR3|QSER1	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.2928466796875	2	520.256371	1038.49819	0.31467	0.00016371	-1.568	-0.00081577	-1.2533	-0.00065206	520.2549081544914	110.11	0.78851	108.96	108.77	109.56	-1.1444					22	14	3	0	0	0	0.027462	1	7988	7988		24.519	6.1948	1	21009	+		60607	16742	50011	50056	66381	66381					-0.019520281786981286
VKYVPVGSTAL	11	Unmodified	_VKYVPVGSTAL_					0	0	0			REV__nc|ENSG00000137968|Q8NCS7-5|SLC44A5	REV__nc|ENSG00000137968|Q8NCS7-5|SLC44A5	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.327880859375	2	567.331882	1132.64921	0.76229	0.00043247	-4.4537	-0.0025267	-3.6914	-0.0020943	567.3291667889723	142.3	3.0938	140.84	139.71	142.81	-1.4627					144	59	3	0	0	0	0.63561	1	13911	13911		41.427	9.4718	1	54551	+		60608	19497	50012	50057	66382	66382					0.0881915819995811
VLAARQINPV	10	Unmodified	_VLAARQINPV_					0	0	0			REV__nc|ENSG00000153291|O95847-2|SLC25A27	REV__nc|ENSG00000153291|O95847-2|SLC25A27	MULTI-MSMS	OvCa9_classI_Rep3	3	540.830810546875	2	540.82984	1079.64513	2.013	0.0010887	0.75549	0.00040859	2.7684	0.0014973	540.8302826822948	124.41	3.5435	123.37	123.03	126.57	-1.0377					194	67	5	0	0	0	0.58282	1	9707	9707		44.117	1.7207	1	8697600	+		60609	20335	50013	50058	66383	66383					0.10849113496897189
VLAAVAMMR	9	Unmodified	_VLAAVAMMR_					0	0	0			REV__ENSG00000123213|ENST00000380985|NLN	REV__ENSG00000123213|ENST00000380985|NLN	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.71905517578125	2	481.269716	960.524878	-0.13695	-6.591E-05	-1.2318	-0.00059281	-1.3687	-0.00065872	481.2689849726942	60.322	0.324	60.322	60.153	60.477	0					13	7	2	0	0	0	0.027449	1	5269	5269		50.025	19.521	1	187070	+		60610	18631	50014	50059	66384	66384					0.043036659072754446
VLADLKVQL	9	Unmodified	_VLADLKVQL_					0	0	0		ENSG00000101132|ENST00000371419|PFDN4;ENST00000487129.1_1_20:52825073-52835686:+|nuORF	ENSG00000101132|ENST00000371419|PFDN4	ENSG00000101132|ENST00000371419|PFDN4	MULTI-MSMS	OvCa99_classI_Rep5	1	499.8169860839844	2	499.815867	997.617182	1.5668	0.0007831	0.21309	0.00010651	1.7799	0.00088961	499.81587566696845	108.87	1.1865	108.87	108.58	109.77	0					74	26	4	0	0	0	0.055627	3	12334	12311;12334;12360		115.49	12.936	1	5459600			60611	2140	50015	50060	66385;66386;66387	66386					0.11827790516804271
VLADQEVRL	9	Unmodified	_VLADQEVRL_					0	0	0		nc|ENSG00000169220|O43566-5|RGS14;ENSG00000169220|ENST00000408923|RGS14;nc|ENSG00000169220|O43566-6|RGS14;ENST00000425155.6_1_5:176795054-176799073:+|nuORF	nc|ENSG00000169220|O43566-5|RGS14	nc|ENSG00000169220|O43566-5|RGS14	MULTI-MSMS	OvCa99_classI_Rep5	1	521.7974243164062	2	521.798206	1041.58186	1.6796	0.00087643	1.3034	0.00068012	2.983	0.0015565	521.798401460309	82.389	0.72237	82.389	82.101	82.824	0					53	16	4	0	0	0	0.043101	1	8525	8525		124.08	11.669	1	1934300			60612	6988	50016	50061	66388	66388					0.06273127989015848
VLADQVWTL	9	Unmodified	_VLADQVWTL_					0	0	0		nc|ENSG00000114026|O15527-6|OGG1;nc|ENSG00000114026|O15527-8|OGG1;nc|ENSG00000114026|O15527-2|OGG1;ENSG00000114026|ENST00000344629|OGG1;nc|ENSG00000114026|O15527-7|OGG1;nc|ENSG00000114026|O15527-5|OGG1;nc|ENSG00000114026|O15527-3|OGG1;nc|ENSG00000114026|O15527-4|OGG1	nc|ENSG00000114026|O15527-6|OGG1	nc|ENSG00000114026|O15527-6|OGG1	MULTI-MSMS	OvCa99_classI_Rep5	1	522.791015625	2	522.78985	1043.56515	1.1735	0.00061348	1.3541	0.00070792	2.5276	0.0013214	522.7904069029332	138.24	1.0569	138.24	137.97	139.03	0					49	21	4	0	0	0	0.1944	1	16127	16127		77.318	11.514	1	573490			60613	3007	50017	50062	66389	66389					0.04510627103036313
VLAEKLAAI	9	Unmodified	_VLAEKLAAI_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	OvCa99_classI_Rep5	1	464.2984313964844	2	464.29731	926.580068	2.4796	0.0011513	0.052773	2.4502E-05	2.5323	0.0011758	464.2971938723598	90.438	0.7556	90.438	90.101	90.857	0					45	18	4	0	0	0	0.075543	1	9691	9691		104.06	0	1	3454400			60614	7740	50018	50063	66390	66390					0.1138411897103424
VLAFFLTLLS	10	Unmodified	_VLAFFLTLLS_					0	0	0			REV__tr|A0A553ST22|A0A553ST22_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_04220PE=4SV=1	REV__tr|A0A553ST22|A0A553ST22_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_04220PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	562.34326171875	2	562.341718	1122.66888	-1.142	-0.00064221	3.7902	0.0021314	2.6482	0.0014892	562.3438081477608	141.84	4.7959	141.62	140.24	145.03	-0.22697					133	96	2	0	0	0	0.7759	1	14392	14392		21.96	0	1	113870	+		60615	30906	50019	50064	66391	66391					0.11245534210706865
VLAFHSAA	8	Unmodified	_VLAFHSAA_					0	0	0		ENST00000460402.5_1_22:19776234-19842274:-|nuORF;ENSG00000185838|ENST00000329517|GNB1L	ENST00000460402.5_1_22:19776234-19842274:-|nuORF	ENST00000460402.5_1_22:19776234-19842274:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	408.221923828125	2	408.224146	814.433738	-0.027736	-1.1322E-05	-4.4652	-0.0018228	-4.4929	-0.0018341	408.22219810033897	33.657	1.3881	30.947	30.571	31.959	-2.7097					59	27	3	0	0	0	0.59103	1	1235	1235		65.897	12.961	1	367700			60616	8292	50020	50065	66392	66392					0.019098615258030804
VLAFIICW	8	Unmodified	_VLAFIICW_					0	0	0		ENSG00000102539|ENST00000218721|MLNR;ENSG00000180772|ENST00000371906|AGTR2	ENSG00000102539|ENST00000218721|MLNR;ENSG00000180772|ENST00000371906|AGTR2	ENSG00000180772|ENST00000371906|AGTR2	MULTI-SECPEP	OvCa9_classI_Rep2	2	482.2842102050781	2	482.769874	963.525196	1.4943	0.00072138	1.6416	0.0007925	3.1358	0.0015139	482.7703011122702	88.393	1.6197	87.026	86.302	87.922	-1.3676					50	32	2	0	0	0	0.028476	1	7769	7769		43.626	0	1	53078			60617	2242;7884	50021	50066	66393	66393					0.04197408898778576
VLAFIICW	8	Unmodified	_VLAFIICW_					0	0	0		ENSG00000102539|ENST00000218721|MLNR;ENSG00000180772|ENST00000371906|AGTR2	ENSG00000102539|ENST00000218721|MLNR;ENSG00000180772|ENST00000371906|AGTR2	ENSG00000180772|ENST00000371906|AGTR2	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	482.769874	963.525196	2.638	0.0012736	2.7213	0.0013137	5.3593	0.0025873	482.77111251617384	86.646	0.78458	86.646	86.431	87.216	0	-0.19111	9.1941E-05	NaN	54.895	41	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1930500			60618	2242;7884	50021	50066							0.04197408898778576
VLAFRISPL	9	Unmodified	_VLAFRISPL_					0	0	0		ENST00000423477.2_1_2:74376112-74376253:+|nuORF	ENST00000423477.2_1_2:74376112-74376253:+|nuORF	ENST00000423477.2_1_2:74376112-74376253:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.3032531738281	2	508.318577	1014.6226	0.022791	1.1585E-05	2.9119	0.0014802	2.9347	0.0014918	508.32026503511395	89.483	0.29407	86.908	86.656	86.95	-2.575					9	5	2	0	0	0	0.027392	1	7658	7658		73.975	5.1879	1	14575			60619	11705	50022	50067	66394	66394					0.11587514099278451
VLAGALAWAL	10	Unmodified	_VLAGALAWAL_					0	0	0		ENSG00000114812|ENST00000325123|VIPR1	ENSG00000114812|ENST00000325123|VIPR1	ENSG00000114812|ENST00000325123|VIPR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.2723083496094	2	492.797478	983.580402	-0.090491	-4.4594E-05	-4.3774	-0.0021572	-4.4679	-0.0022018	492.79524905028313	77.3	1.409	74.483	74.048	75.457	-2.8165					78	28	4	0	0	0	0.026578	1	6196	6196		54.765	27.969	1	685020			60620	3044	50023	50068	66395	66395					0.08795538690890226
VLAGALAWAL	10	Unmodified	_VLAGALAWAL_					0	0	0		ENSG00000114812|ENST00000325123|VIPR1	ENSG00000114812|ENST00000325123|VIPR1	ENSG00000114812|ENST00000325123|VIPR1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	492.797478	983.580402	-0.081859	-4.034E-05	-4.4916	-0.0022135	-4.5735	-0.0022538	492.7951726405159	76.282	1.7142	74.428	73.689	75.403	-1.854	0.11047	-0.00020983	NaN	54.765	81	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	301790			60621	3044	50023	50068							0.08795538690890226
VLAGHLLH	8	Unmodified	_VLAGHLLH_					0	0	0		ENST00000457668.1_1_2:60579119-60579293:-|nuORF	ENST00000457668.1_1_2:60579119-60579293:-|nuORF	ENST00000457668.1_1_2:60579119-60579293:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	430.2733459472656	2	430.261062	858.507572	-0.30275	-0.00013026	2.3985	0.001032	2.0957	0.00090171	430.2621882260158	107.43	0.28982	107.13	107.02	107.31	-0.30836					6	5	2	0	0	0	0.028476	1	10037	10037		16.705	3.7458	1	3980.9			60622	12130	50024	50069	66396	66396					0.07265829688128633
VLAGIMSR	8	Unmodified	_VLAGIMSR_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4;ITGB4|p.D539*|1|0.13|ENSG00000132470|chr17:75733648-75733649|-/C|frameshift_variant;ITGB4|p.L550Ifs*220|1|0.07|ENSG00000132470|chr17:75733682-75733683|-/AT|frameshift_variant;ITGB4|p.N318Tfs*58|1|0.73|ENSG00000132470|chr17:75730454-75730454|A/-|frameshift_variant	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	OvCa99_classI_Rep5	1	423.74664306640625	2	423.746931	845.479308	2.8319	0.0012	-4.1323	-0.001751	-1.3003	-0.00055102	423.74507974570287	75.473	0.3926	75.473	75.33	75.723	0					20	9	3	0	0	0	0.66704	1	7517	7517		50.025	2.1089	1	1460100			60623	4140	50025	50070	66397	66397					0.050387637165499655
VLAGITDI	8	Unmodified	_VLAGITDI_					0	0	0		tr|A0A7D6VP71|A0A7D6VP71_9CLOTCationtransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_16060PE=4SV=1	tr|A0A7D6VP71|A0A7D6VP71_9CLOTCationtransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_16060PE=4SV=1	tr|A0A7D6VP71|A0A7D6VP71_9CLOTCationtransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_16060PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	401.2413635253906	2	401.239461	800.46437	3.0037	0.0012052	-0.76165	-0.0003056	2.2421	0.00089961	401.2390309742827	74.777	0.57034	74.777	74.517	75.087	0					27	13	3	0	0	0	0.49583	1	7410	7410		77.944	8.8509	1	1207800			60624	34755	50026	50071	66398	66398					0.05615595120195849
VLAGITDI	8	Unmodified	_VLAGITDI_					0	0	0		tr|A0A7D6VP71|A0A7D6VP71_9CLOTCationtransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_16060PE=4SV=1	tr|A0A7D6VP71|A0A7D6VP71_9CLOTCationtransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_16060PE=4SV=1	tr|A0A7D6VP71|A0A7D6VP71_9CLOTCationtransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_16060PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	401.239461	800.46437	1.0379	0.00041643	-0.31819	-0.00012767	0.71967	0.00028876	401.2392076359306	76.762	0.98965	74.972	74.478	75.468	-1.7894	0.10085	0.00033728	NaN	77.944	21	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15388			60625	34755	50026	50071							0.05615595120195849
VLAGITDI	8	Unmodified	_VLAGITDI_					0	0	0		tr|A0A7D6VP71|A0A7D6VP71_9CLOTCationtransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_16060PE=4SV=1	tr|A0A7D6VP71|A0A7D6VP71_9CLOTCationtransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_16060PE=4SV=1	tr|A0A7D6VP71|A0A7D6VP71_9CLOTCationtransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_16060PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	401.239461	800.46437	1.9124	0.00076734	-1.2613	-0.00050609	0.6511	0.00026125	401.23881349538595	77.682	0.58261	74.865	74.681	75.263	-2.8165	-0.0061748	-0.00041957	NaN	77.944	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36960			60626	34755	50026	50071							0.05615595120195849
VLAGLSILVL	10	Unmodified	_VLAGLSILVL_					0	0	0			REV__nc|ENSG00000170909|Q8IYS5-6|OSCAR	REV__nc|ENSG00000170909|Q8IYS5-6|OSCAR	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.34100341796875	2	499.336436	996.658318	1.1993	0.00059887	-0.30854	-0.00015407	0.89078	0.0004448	499.3360402852364	130.99	0.28485	130.99	130.87	131.15	0					10	5	3	0	0	0	0.026752	1	15204	15204		44.117	6.9577	1	142730	+		60627	21573	50027	50072	66399	66399					0.15985551556275368
VLAHPNLTV	9	Unmodified	_VLAHPNLTV_					0	0	0			REV__ENSG00000198924|ENST00000361384|DCLRE1A	REV__ENSG00000198924|ENST00000361384|DCLRE1A	MULTI-MSMS	OvCa9_classI_Rep2	2	482.28436279296875	2	482.284734	962.554916	1.4873	0.00071731	-1.7499	-0.00084393	-0.26255	-0.00012662	482.2838148117403	88.658	2.4683	87.29	86.839	89.307	-1.3676					116	49	4	0	0	0	0.42676	1	7812	7812		49.442	0	1	1008100	+		60628	23094	50028	50073	66400	66400					0.07214064168465484
VLAISTKNPLQ	11	Unmodified	_VLAISTKNPLQ_					0	0	0		ENST00000552279.1_1_12:58149512-58151020:+|nuORF;ENSG00000139266|ENST00000266643|MARCHF9	ENST00000552279.1_1_12:58149512-58151020:+|nuORF	ENST00000552279.1_1_12:58149512-58151020:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	592.3565063476562	2	592.355888	1182.69722	-0.064566	-3.8246E-05	1.1441	0.00067771	1.0795	0.00063946	592.3561570930796	33.215	0.6421	33.215	33.039	33.681	0					20	12	3	0	0	0	0.72064	1	1514	1514		22.58	0	1	130850			60629	4760	50029	50074	66401	66401					0.11318232119992899
VLAIYIGAGI	10	Unmodified	_VLAIYIGAGI_					0	0	0		tr|A0A7D6VS71|A0A7D6VS71_9CLOTTryptophan--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=trpSPE=3SV=1	tr|A0A7D6VS71|A0A7D6VS71_9CLOTTryptophan--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=trpSPE=3SV=1	tr|A0A7D6VS71|A0A7D6VS71_9CLOTTryptophan--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=trpSPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.28741455078125	2	495.305136	988.595718	1.0404	0.00051533	0.16803	8.3225E-05	1.2084	0.00059855	495.3051242699104	109.47	0.17708	109.47	109.37	109.55	0					5	3	2	0	0	0	0.026839	1	12406	12406		26.796	4.8362	1	47655			60630	34993	50030	50075	66402	66402					0.10096405488093296
VLAKDQAET	9	Unmodified	_VLAKDQAET_					0	0	0			REV__tr|A0A7D6VVM4|A0A7D6VVM4_9CLOTPhagemajorcapsidproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11800PE=4SV=1	REV__tr|A0A7D6VVM4|A0A7D6VVM4_9CLOTPhagemajorcapsidproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11800PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.767822265625	2	487.761289	973.508025	-0.6233	-0.00030402	1.1365	0.00055433	0.51318	0.00025031	487.7614329498061	70.359	0.83229	66.878	66.249	67.081	-3.4812					20	16	2	0	0	0	0.027462	1	5243	5243		34.173	8.7224	1	115600	+		60631	31724	50031	50076	66403	66403					0.02021159826665553
VLAKKMLRK	9	Unmodified	_VLAKKMLRK_					0	0	0		nc|ENSG00000143199|Q96PN6-4|ADCY10;nc|ENSG00000143199|Q96PN6-2|ADCY10;ENSG00000143199|ENST00000367851|ADCY10;nc|ENSG00000143199|Q96PN6-3|ADCY10	nc|ENSG00000143199|Q96PN6-4|ADCY10	nc|ENSG00000143199|Q96PN6-4|ADCY10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.7918701171875	2	543.862629	1085.71071	0.13822	7.5172E-05	0.25455	0.00013844	0.39277	0.00021361	543.863329173755	32.674	0.24935	29.978	29.903	30.153	-2.6954					6	4	2	0	0	0	0.027462	1	820	820		11.511	2.6887	1	5706.3			60632	5021	50032	50077	66404	66404					0.17127811418254169
VLALATGWSG	10	Unmodified	_VLALATGWSG_					0	0	0			REV__tr|A0A553SL81|A0A553SL81_NIACIGlycerol-3-phosphatedehydrogenase[NAD(P)+]OS=NialliacirculansOX=1397GN=gpsAPE=3SV=1	REV__tr|A0A553SL81|A0A553SL81_NIACIGlycerol-3-phosphatedehydrogenase[NAD(P)+]OS=NialliacirculansOX=1397GN=gpsAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	488.2852783203125	2	487.768917	973.523281	-0.243	-0.00011853	1.3529	0.00065991	1.1099	0.00054138	487.7708621553493	101.85	0.25484	99.583	99.354	99.609	-2.2665					5	4	2	0	0	0	0.026752	1	9147	9147		35.618	18.253	1	13044	+		60633	30197	50033	50078	66405	66405					0.03546071414530161
VLALGLGRLL	10	Unmodified	_VLALGLGRLL_					0	0	0		nc|ENSG00000054392|Q5VTY9-6|HHAT;nc|ENSG00000054392|Q5VTY9-5|HHAT;nc|ENSG00000054392|Q5VTY9-2|HHAT;ENSG00000054392|ENST00000261458|HHAT;nc|ENSG00000054392|Q5VTY9-7|HHAT;nc|ENSG00000054392|Q5VTY9-3|HHAT	nc|ENSG00000054392|Q5VTY9-6|HHAT	nc|ENSG00000054392|Q5VTY9-6|HHAT	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.2760009765625	2	512.847502	1023.68045	1.7911	0.00091856	0.95766	0.00049113	2.7488	0.0014097	512.847493723891	78.016	0.49743	78.016	77.757	78.254	0					16	11	2	0	0	0	0.027204	1	7909	7909		11.511	0	1	127620			60634	1209	50034	50079	66406	66406					0.16955776024713032
VLALQAARLV	10	Unmodified	_VLALQAARLV_					0	0	0			REV__ENSG00000171773|ENST00000301944|NXNL1	REV__ENSG00000171773|ENST00000301944|NXNL1	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.9415283203125	2	527.342584	1052.67061	-1.8483	-0.00097468	0.98133	0.0005175	-0.86696	-0.00045718	527.3428783862978	84.789	0.6418	83.243	83.104	83.745	-1.5462					20	12	2	0	0	0	0.027117	1	7327	7327		10.866	0	1	22526	+		60635	21643	50035	50080	66407	66407					0.14638588019306553
VLALRTIQV	9	Unmodified	_VLALRTIQV_					0	0	0		ENSG00000111249|ENST00000261726|CUX2	ENSG00000111249|ENST00000261726|CUX2	ENSG00000111249|ENST00000261726|CUX2	MULTI-MSMS	OvCa99_classI_Rep5	1	506.82916259765625	2	506.829309	1011.64407	1.989	0.0010081	-0.016765	-8.4968E-06	1.9722	0.00099958	506.8291826861078	113.65	1.0898	113.65	113.38	114.47	0					62	25	4	0	0	0	0.51865	1	13006	13006		40.778	0.20554	1	5550400			60636	2815	50036	50081	66408	66408					0.13870899127994107
VLALVLQR	8	Unmodified	_VLALVLQR_					0	0	0		ENSG00000165370|ENST00000651716|GPR101	ENSG00000165370|ENST00000651716|GPR101	ENSG00000165370|ENST00000651716|GPR101	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.268798828125	2	456.30547	910.596387	-0.14471	-6.603E-05	2.8822	0.0013152	2.7375	0.0012491	456.3061111605836	40.762	0.17556	40.762	40.619	40.795	0					5	3	2	0	0	0	0.028476	1	2494	2494		31.579	3.3246	1	20918			60637	6555	50037	50082	66409	66409					0.1375124492778923
VLAMLFGGR	9	Unmodified	_VLAMLFGGR_					0	0	0		ENST00000601803.5_1_19:19032626-19032992:+|nuORF	ENST00000601803.5_1_19:19032626-19032992:+|nuORF	ENST00000601803.5_1_19:19032626-19032992:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.2966613769531	2	482.275855	962.537157	-0.86733	-0.00041829	-1.1789	-0.00056854	-2.0462	-0.00098683	482.27483704942694	93.295	0.19958	90.788	90.714	90.913	-2.5072					5	3	2	0	0	0	0.027462	1	8125	8125		25.45	0	1	5449.1			60638	14230	50038	50083	66410	66410					0.054390256419878824
VLAPIFSYLI	10	Unmodified	_VLAPIFSYLI_					0	0	0			REV__ENSG00000138075|ENST00000405322|ABCG5	REV__ENSG00000138075|ENST00000405322|ABCG5	MULTI-SECPEP	OvCa9_classI_Rep3	3	568.311767578125	2	568.341718	1134.66888	-0.79386	-0.00045118	-1.7494	-0.00099425	-2.5432	-0.0014454	568.3407739994473	87.941	0.25716	85.793	85.683	85.94	-2.1478					6	4	2	0	0	0	0.026768	1	5314	5314		40.573	10.255	1	12149	+		60639	19506	50039	50084	66411	66411					0.10693534210713551
VLAPLLHS	8	Unmodified	_VLAPLLHS_					0	0	0			REV__nc|ENSG00000177943|Q6UXC1|MAMDC4	REV__nc|ENSG00000177943|Q6UXC1|MAMDC4	MULTI-SECPEP	OvCa9_classI_Rep2	2	424.91094970703125	2	425.263271	848.511988	0.27617	0.00011745	2.1258	0.00090402	2.402	0.0010215	425.26398237389117	64.919	0.15767	62.195	62.076	62.233	-2.7245					4	2	2	0	0	0	0.028476	1	4971	4971		28.254	19.432	1	6729.6	+		60640	29025	50040	50085	66412	66412					0.08167294111046886
VLAQLISPK	9	Unmodified	_VLAQLISPK_					0	0	0			REV__ENST00000457147.1_1_10:75012601-75012799:+|nuORF	REV__ENST00000457147.1_1_10:75012601-75012799:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.7756042480469	2	484.810585	967.606617	-0.93377	-0.0004527	3.0908	0.0014985	2.157	0.0010458	484.81192594196625	92.694	0.15074	90.186	90.061	90.212	-2.5072					4	2	2	0	0	0	0.027462	1	8058	8058		29.15	2.4566	1	19077	+		60641	26041	50041	50086	66413	66413					0.12151807862380792
VLARHTQR	8	Unmodified	_VLARHTQR_					0	0	0			REV__ENST00000471382.5_1_1:212859903-212859990:-|nuORF	REV__ENST00000471382.5_1_1:212859903-212859990:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	490.7940673828125	2	490.79105	979.567546	1.3442	0.00065974	1.0617	0.00052109	2.406	0.0011808	490.7914818857912	130.45	1.2409	130.22	129.71	130.95	-0.22696					37	24	2	0	0	0	0.7549	1	12799	12799		24.203	1.1603	1	18977	+		60642	26278	50042	50087	66414	66414					0.07694520351367373
VLARHTQR	8	Unmodified	_VLARHTQR_					0	0	0			REV__ENST00000471382.5_1_1:212859903-212859990:-|nuORF	REV__ENST00000471382.5_1_1:212859903-212859990:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	490.79105	979.567546	1.3442	0.00065974	1.0617	0.00052109	2.406	0.0011808	490.7914818857912	130.45	1.2409	130.22	129.71	130.95	-0.22696	0.14979	0.00033012	NaN	24.203	37	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18977	+		60643	26278	50042	50087							0.07694520351367373
VLARHTQR	8	Unmodified	_VLARHTQR_					0	0	0			REV__ENST00000471382.5_1_1:212859903-212859990:-|nuORF	REV__ENST00000471382.5_1_1:212859903-212859990:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	490.79105	979.567546	-0.11978	-5.8788E-05	2.1351	0.0010479	2.0153	0.00098909	490.79207606842476	131.13	1.3728	130	129.17	130.54	-1.1249	-0.066765	0.0013837	NaN	24.203	39	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26485	+		60644	26278	50042	50087							0.07694520351367373
VLARHTQR	8	Unmodified	_VLARHTQR_					0	0	0			REV__ENST00000471382.5_1_1:212859903-212859990:-|nuORF	REV__ENST00000471382.5_1_1:212859903-212859990:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	490.79105	979.567546	3.9461	0.0019367	-1.4882	-0.00073039	2.4579	0.0012063	490.79018805809756	131.47	1.3002	129.99	129.2	130.5	-1.4871	-0.083027	-0.0021729	NaN	24.203	43	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30023	+		60645	26278	50042	50087							0.07694520351367373
VLARVAVP	8	Unmodified	_VLARVAVP_					0	0	0		ENST00000361256.9_1_9:131585006-131586171:-|nuORF	ENST00000361256.9_1_9:131585006-131586171:-|nuORF	ENST00000361256.9_1_9:131585006-131586171:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	412.7714538574219	2	412.771263	823.527973	0.061376	2.5334E-05	0.66446	0.00027427	0.72584	0.00029961	412.7713807300369	93.938	1.2597	91.431	91.212	92.472	-2.5072					53	25	3	0	0	0	0.72922	1	8256	8256		37.028	1.8278	1	408510			60646	10789	50043	50088	66415	66415					0.10915000347949899
VLASLGLTK	9	Unmodified	_VLASLGLTK_					0	0	0		ENST00000527765.1_1_11:64896153-64897501:-|nuORF	ENST00000527765.1_1_11:64896153-64897501:-|nuORF	ENST00000527765.1_1_11:64896153-64897501:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	451.2908935546875	2	451.289485	900.564418	0.24558	0.00011083	-0.62488	-0.000282	-0.3793	-0.00017117	451.28909551125827	74.128	2.1614	70.897	70.579	72.741	-3.2308					113	44	5	0	0	0	0.3076	1	5805	5805		62.107	6.6032	1	1762500			60647	13242	50044	50089	66416	66416					0.11015832453983876
VLASLIIRL	9	Unmodified	_VLASLIIRL_					0	0	0		nc|ENSG00000113522|Q92878-3|RAD50;ENSG00000113522|ENST00000378823|RAD50;nc|ENSG00000113522|Q92878-2|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	nc|ENSG00000113522|Q92878-3|RAD50	MULTI-MSMS	OvCa99_classI_Rep5	1	499.3436584472656	2	499.342052	996.669552	1.2559	0.00062712	0.74467	0.00037184	2.0006	0.00099896	499.34225923220697	130.77	2.4091	130.77	130.39	132.8	0					94	50	4	0	0	0	0.013607	2	15179	15156;15179		157.33	43.917	1	815670			60648	2975	50045	50090	66417;66418	66418					0.17108373650421527
VLATAAPLL	9	Unmodified	_VLATAAPLL_					0	0	0			REV__ENST00000417559.1_1_10:82289453-82295456:-|nuORF	REV__ENST00000417559.1_1_10:82289453-82295456:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	434.7801818847656	2	434.778754	867.542954	-0.48498	-0.00021086	3.6911	0.0016048	3.2061	0.001394	434.7802589078916	56.649	1.9357	53.845	53.225	55.161	-2.804					98	38	3	0	0	0	0.52083	1	4033	4033		40.573	7.057	1	165960	+		60649	25563	50046	50091	66419	66419					0.10388447425293634
VLAVDHLAAV	10	Unmodified	_VLAVDHLAAV_					0	0	0		ENSG00000184530|ENST00000329722|C6orf58	ENSG00000184530|ENST00000329722|C6orf58	ENSG00000184530|ENST00000329722|C6orf58	MULTI-MSMS	OvCa9_classI_Rep3	3	504.2977600097656	2	504.297842	1006.58113	-0.082287	-4.1497E-05	-0.36053	-0.00018182	-0.44282	-0.00022331	504.2976378271559	104.41	3.9037	102.97	102.5	106.4	-1.4347					184	75	5	0	0	0	0.62668	1	7253	7253		38.806	5.2906	1	927760			60650	8168	50047	50092	66420	66420					0.07810333339944009
VLAVGYTAFNG	11	Unmodified	_VLAVGYTAFNG_					0	0	0		THBS4|p.G768V|1|0.05|ENSG00000113296|chr5:80078958-80078958|G/T|missense_variant	THBS4|p.G768V|1|0.05|ENSG00000113296|chr5:80078958-80078958|G/T|missense_variant	THBS4|p.G768V|1|0.05|ENSG00000113296|chr5:80078958-80078958|G/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.3260498046875	2	556.292756	1110.57096	0.88896	0.00049452	3.1682	0.0017625	4.0572	0.002257	556.7948672189186	83.995	0.29359	81.332	81.118	81.412	-2.6629					6	5	2	0	0	0	0.025239	1	6992	6992		32.812	3.6424	1	9197.5			60651	32951	50048	50093	66421	66421					0.02009725614720992
VLAVLCKGP	9	Unmodified	_VLAVLCKGP_					0	0	0		ENST00000423894.5_1_3:28283112-28361002:+|nuORF	ENST00000423894.5_1_3:28283112-28361002:+|nuORF	ENST00000423894.5_1_3:28283112-28361002:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	450.23199462890625	2	450.272781	898.531009	2.7857	0.0012543	1.2075	0.00054372	3.9932	0.001798	450.27315596363513	44.287	0.69682	41.578	41.353	42.049	-2.7097					18	13	2	0	0	0	0.027462	1	2487	2487		35.201	5.3592	1	20974			60652	11707	50049	50094	66422	66422					0.07768507410457914
VLAVVVRLAR	10	Unmodified	_VLAVVVRLAR_					0	0	0			REV__ENSG00000184451|ENST00000332438|CCR10	REV__ENSG00000184451|ENST00000332438|CCR10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.3135375976562	2	548.371675	1094.7288	0.53812	0.00029509	-1.1447	-0.00062772	-0.60657	-0.00033263	548.3708381994124	37.576	0.64835	34.683	34.442	35.09	-2.8925					19	12	2	0	0	0	0.027021	1	1377	1377		15.642	0	1	25962	+		60653	22429	50050	50095	66423	66423					0.18522269664595115
VLAWANTH	8	Unmodified	_VLAWANTH_					0	0	0		ENST00000550861.1_1_12:50236507-50236870:-|nuORF	ENST00000550861.1_1_12:50236507-50236870:-|nuORF	ENST00000550861.1_1_12:50236507-50236870:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.27044677734375	2	456.240327	910.466101	-0.14997	-6.8423E-05	3.4882	0.0015914	3.3382	0.001523	456.24203179436984	40.727	0.31618	40.727	40.479	40.795	0					13	6	3	0	0	0	0.028476	1	2472	2472		26.796	6.3143	1	51282			60654	13594	50051	50096	66424	66424					0.00728648928804887
VLAYVRVL	8	Unmodified	_VLAYVRVL_					0	0	0			REV__sp|P09720|US13_HCMVAUncharacterizedproteinHVLF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US13PE=3SV=1	REV__sp|P09720|US13_HCMVAUncharacterizedproteinHVLF5OS=Humancytomegalovirus(strainAD169)OX=10360GN=US13PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.7992248535156	2	466.80002	931.585488	-0.22234	-0.00010379	0.26069	0.00012169	0.038357	1.7905E-05	466.8000170196389	104.75	1.1173	102.63	102.38	103.49	-2.1192					51	21	3	0	0	0	0.69415	1	9498	9498		44.531	5.5096	1	198530	+		60655	29381	50052	50097	66425	66425					0.11695842553513103
VLCDRALLL	9	Unmodified	_VLCDRALLL_					0	0	0			REV__ENST00000304987.3_1_11:111596525-111596654:+|nuORF	REV__ENST00000304987.3_1_11:111596525-111596654:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	508.30181884765625	2	508.30207	1014.58959	0.17446	8.8677E-05	-0.8286	-0.00042118	-0.65415	-0.0003325	508.3016033253037	81.716	3.6233	80.067	78.915	82.538	-1.6485					135	71	4	0	0	0	0.36502	1	6964	6964		55.504	2.1528	1	1275400	+		60656	24281	50053	50098	66426	66426					0.08287563984913504
VLCEIEEVE	9	Unmodified	_VLCEIEEVE_					0	0	0			REV__OPRL1|p.D195V|1|0.56|ENSG00000125510|chr20:64098152-64098152|A/T|missense_variant	REV__OPRL1|p.D195V|1|0.56|ENSG00000125510|chr20:64098152-64098152|A/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.8090209960938	2	531.754815	1061.49508	-1.2944	-0.0006883	2.1089	0.0011214	0.81451	0.00043312	531.754687542914	79.511	0.23441	76.759	76.657	76.891	-2.7514					6	4	2	0	0	0	0.027462	1	6463	6463		17.365	5.8539	1	16095	+		60657	29263	50054	50099	66427	66427					-0.033210393477247635
VLCSANQLLI	10	Unmodified	_VLCSANQLLI_					0	0	0			REV__chr12:56286645-56299289|126|11.6|0.45|4.7|-|0|CS,None|1	REV__chr12:56286645-56299289|126|11.6|0.45|4.7|-|0|CS,None|1	MULTI-MSMS	OvCa99_classI_Rep5	1	537.3077392578125	2	537.30481	1072.59507	1.326	0.00071244	0.79936	0.0004295	2.1253	0.0011419	537.305073906003	111.43	2.0374	111.43	111.02	113.06	0					107	44	4	0	0	0	0.20801	1	12714	12714		93.195	10.89	1	4205600	+		60658	15884	50055	50100	66428	66428					0.061672427767234694
VLCVFFLQRI	10	Unmodified	_VLCVFFLQRI_					0	0	0		ENST00000296504.3_1_4:174298503-174298614:+|nuORF	ENST00000296504.3_1_4:174298503-174298614:+|nuORF	ENST00000296504.3_1_4:174298503-174298614:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	413.2400207519531	3	413.242372	1236.70529	0.33192	0.00013716	-3.1783	-0.0013134	-2.8464	-0.0011762	413.2408992743728	64.284	2.2446	61.559	60.447	62.691	-2.7245					113	42	4	0	0	0	0.59317	1	4896	4896		42.864	4.1107	1	551860			60659	10138	50056	50101	66429	66429					0.09640087835759914
VLCVRSIL	8	Unmodified	_VLCVRSIL_					0	0	0		ENST00000433834.5_1_1:19810851-19811010:-|nuORF	ENST00000433834.5_1_1:19810851-19811010:-|nuORF	ENST00000433834.5_1_1:19810851-19811010:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	451.7802429199219	2	451.778231	901.541908	2.6917	0.0012161	1.5788	0.00071328	4.2705	0.0019293	451.7788715133923	137.54	1.2376	136	135.67	136.9	-1.5437					54	27	4	0	0	0	0.75241	1	13417	13417		25.45	0	1	51174			60660	11834	50057	50102	66430	66430					0.08719909784736046
VLCVVTIFSI	10	Unmodified	_VLCVVTIFSI_					0	0	0		ENSG00000267534|ENST00000646641|S1PR2	ENSG00000267534|ENST00000646641|S1PR2	ENSG00000267534|ENST00000646641|S1PR2	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.3497314453125	2	547.319928	1092.6253	1.7987	0.00098446	3.6187	0.0019806	5.4174	0.0029651	547.3216791164799	79.624	0.39794	79.624	79.509	79.907	0					18	9	3	0	0	0	0.026939	1	8131	8131		24.203	2.2429	1	478580			60661	9533	50058	50103	66431	66431					0.0826960144190707
VLCWCLFFPL	10	Unmodified	_VLCWCLFFPL_					0	0	0			REV__ENSG00000063127|ENST00000335875|SLC6A16	REV__ENSG00000063127|ENST00000335875|SLC6A16	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.898681640625	3	414.213425	1239.61844	0.34694	0.00014371	1.5834	0.00065585	1.9303	0.00079956	414.2140822138603	38.915	2.2177	35.989	35.651	37.868	-2.9264					117	43	4	0	0	0	0.027007	1	1761	1761		8.2351	0	1	957150	+		60662	16757	50059	50104	66432	66432					0.00821965289696891
VLDAAVGGKPE	11	Unmodified	_VLDAAVGGKPE_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3465576171875	2	528.290214	1054.56587	2.1433	0.0011323	-0.33444	-0.00017668	1.8089	0.00095561	528.2900671712318	86.911	1.034	86.911	86.594	87.628	0					44	24	3	0	0	0	0.025265	1	9277	9277		42.864	7.246	1	3371300			60663	5793	50060	50105	66433	66433					0.04077421752117516
VLDADVPI	8	Unmodified	_VLDADVPI_					0	0	0			REV__tr|A0A7D7A165|A0A7D7A165_9CLOTRNaseadapterRapZOS=ClostridiumintestinaleOX=36845GN=rapZPE=3SV=1	REV__tr|A0A7D7A165|A0A7D7A165_9CLOTRNaseadapterRapZOS=ClostridiumintestinaleOX=36845GN=rapZPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	421.2662353515625	2	421.236919	840.459284	-1.2089	-0.00050925	0.4842	0.00020396	-0.72474	-0.00030529	421.23756244093914	40.873	0.20783	37.919	37.789	37.997	-2.9541					5	3	2	0	0	0	0.028476	1	1783	1783		25.45	0	1	10010	+		60664	32474	50061	50106	66434	66434					0.032672912575776536
VLDCGWIKP	9	Unmodified	_VLDCGWIKP_					0	0	0		ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	ENSG00000173769|ENST00000309765|TOPAZ1	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.774169921875	2	515.773145	1029.53174	0.53479	0.00027583	1.6593	0.0008558	2.1941	0.0011316	515.7739881743894	110.55	2.0527	108.95	108.49	110.54	-1.6011					79	38	3	0	0	0	0.44294	1	10199	10199		47.916	1.9434	1	288720			60665	7413	50062	50107	66435	66435					0.018153020594809277
VLDDEGRNL	9	Unmodified	_VLDDEGRNL_					0	0	0		ENSG00000166402|ENST00000299506|TUB;nc|ENSG00000166402|P50607-2|TUB	ENSG00000166402|ENST00000299506|TUB	ENSG00000166402|ENST00000299506|TUB	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7579956054688	2	515.76182	1029.50909	-0.91978	-0.00047439	-2.2845	-0.0011782	-3.2042	-0.0016526	515.7604705609308	127.55	1.5787	126.12	125.79	127.37	-1.4357					77	29	4	0	0	0	0.31747	1	12173	12173		60.972	9.6365	1	263920			60666	6675	50063	50108	66436	66436					-0.004486258044153146
VLDDEITKF	9	Unmodified	_VLDDEITKF_					0	0	0			REV__ENST00000544662.1_1_12:132414461-132416977:+|nuORF	REV__ENST00000544662.1_1_12:132414461-132416977:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.2863159179688	2	540.284597	1078.55464	-1.4173	-0.00076575	1.0049	0.00054296	-0.41236	-0.00022279	540.2850976781742	92.085	1.1145	89.542	89.313	90.427	-2.5425					56	21	3	0	0	0	0.22621	1	7976	7976		71.877	10.906	1	1077100	+		60667	21990	50064	50109	66437	66437					0.018505996579506245
VLDDKLVFV	9	Unmodified	_VLDDKLVFV_					0	0	0		nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6;ENST00000426898.2_1_12:45610123-45776982:+|nuORF	nc|ENSG00000177119|Q4KMQ2-3|ANO6	nc|ENSG00000177119|Q4KMQ2-3|ANO6	MULTI-MSMS	OvCa99_classI_Rep5	1	524.3093872070312	2	524.307875	1046.6012	1.9339	0.001014	-0.28786	-0.00015093	1.646	0.00086302	524.3076848280905	116.34	1.0389	116.34	115.96	117	0					50	22	3	0	0	0	0.043101	2	13292	13292;13315		124.08	44.629	1	9393000			60668	7661	50065	50110	66438;66439	66438					0.07976084279880524
VLDDKLVFV	9	Unmodified	_VLDDKLVFV_					0	0	0		nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6;ENST00000426898.2_1_12:45610123-45776982:+|nuORF	nc|ENSG00000177119|Q4KMQ2-3|ANO6	nc|ENSG00000177119|Q4KMQ2-3|ANO6	MULTI-MSMS	OvCa9_classI_Rep2	2	524.3070678710938	2	524.307875	1046.6012	-0.88547	-0.00046426	0.16866	8.8432E-05	-0.7168	-0.00037583	524.3077943814858	116.75	1.7338	116.62	116.22	117.96	-0.12869					71	34	4	0	0	0	0.084918	4	11157	11151;11157;11163;11169		101.25	34.843	1	781710			60669	7661	50065	50110	66440;66441;66442;66443	66441					0.07976084279880524
VLDDKLVFV	9	Unmodified	_VLDDKLVFV_					0	0	0		nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6;ENST00000426898.2_1_12:45610123-45776982:+|nuORF	nc|ENSG00000177119|Q4KMQ2-3|ANO6	nc|ENSG00000177119|Q4KMQ2-3|ANO6	MULTI-MSMS	OvCa9_classI_Rep3	3	524.3082885742188	2	524.307875	1046.6012	-1.067	-0.00055945	0.1853	9.7154E-05	-0.88173	-0.0004623	524.3078003096332	117.55	1.8829	116.51	116.04	117.93	-1.0324					72	37	5	0	0	0	0.055627	3	8824	8815;8819;8824		115.49	41.519	1	1005800			60670	7661	50065	50110	66444;66445;66446	66446					0.07976084279880524
VLDDKLVFV	9	Unmodified	_VLDDKLVFV_					0	0	0		nc|ENSG00000177119|Q4KMQ2-3|ANO6;ENSG00000177119|ENST00000320560|ANO6;nc|ENSG00000177119|Q4KMQ2-4|ANO6;nc|ENSG00000177119|Q4KMQ2-2|ANO6;ENST00000426898.2_1_12:45610123-45776982:+|nuORF	nc|ENSG00000177119|Q4KMQ2-3|ANO6	nc|ENSG00000177119|Q4KMQ2-3|ANO6	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.3070678710938	2	524.307875	1046.6012	-1.3343	-0.00069956	-1.3146	-0.00068926	-2.6489	-0.0013888	524.3077292741302	117.79	1.8803	116.44	116	117.88	-1.3444					65	35	2	0	0	0	0.1149	2	11018	11007;11018		93.143	23.377	1	1315600			60671	7661	50065	50110	66447;66448	66448					0.07976084279880524
VLDGLKSRTT	10	Unmodified	_VLDGLKSRTT_					0	0	0		ENST00000378052.5_1_7:148994191-148994263:+|nuORF	ENST00000378052.5_1_7:148994191-148994263:+|nuORF	ENST00000378052.5_1_7:148994191-148994263:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3172607421875	2	545.316763	1088.61897	-1.7047	-0.0009296	1.3026	0.00071033	-0.40209	-0.00021926	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.75313	1	14272	14272		24.519	0.31644	1	202430			60672	11099	50066	50111	66449	66449					0.07820799534761136
VLDGVLFEAAV	11	Unmodified	_VLDGVLFEAAV_					0	0	0			REV__nc|ENSG00000166448|Q8N3G9-3|TMEM130	REV__nc|ENSG00000166448|Q8N3G9-3|TMEM130	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.8160400390625	2	566.816064	1131.61758	1.6155	0.00091566	-2.2296	-0.0012638	-0.61416	-0.00034811	566.8149073889535	110.19	2.7767	108.59	108.28	111.06	-1.6011					118	52	4	0	0	0	0.48738	1	10148	10148		54.776	3.5836	1	1542500	+		60673	28979	50067	50112	66450	66450					0.05703165445970626
VLDHHLSSK	9	Unmodified	_VLDHHLSSK_					0	0	0		ENST00000537645.5_2_19:57803730-57803808:+|nuORF	ENST00000537645.5_2_19:57803730-57803808:+|nuORF	ENST00000537645.5_2_19:57803730-57803808:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.8250732421875	2	518.282723	1034.55089	0.87927	0.00045571	-2.2795	-0.0011814	-1.4003	-0.00072573	518.7825701947963	132.95	0.66083	132.95	132.56	133.22	0					31	13	4	0	0	0	0.027462	1	15435	15435		44.117	19.914	1	90305			60674	13408	50068	50113	66451	66451					0.03499974674764417
VLDHYVKKL	9	Unmodified	_VLDHYVKKL_					0	0	0			REV__tr|A0A7D6VT78|A0A7D6VT78_9CLOT4Fe-4SbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01775PE=4SV=1	REV__tr|A0A7D6VT78|A0A7D6VT78_9CLOT4Fe-4SbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01775PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.7693481445312	2	557.834591	1113.65463	1.855	0.0010348	-0.22749	-0.0001269	1.6275	0.00090789	557.8343240381087	107.04	0.59183	107.04	106.85	107.44	0					19	13	2	0	0	0	0.027462	1	12049	12049		42.396	0	1	1182700	+		60675	31578	50069	50114	66452	66452					0.10234881782434968
VLDINKYGEN	10	Unmodified	_VLDINKYGEN_					0	0	0			REV__tr|A0A7D6VZZ6|A0A7D6VZZ6_9CLOTAminotransferaseclassV-foldPLP-dependentenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_21530PE=3SV=1	REV__tr|A0A7D6VZZ6|A0A7D6VZZ6_9CLOTAminotransferaseclassV-foldPLP-dependentenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_21530PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	582.802001953125	2	582.798403	1163.58225	1.1315	0.00065944	3.8859	0.0022647	5.0174	0.0029241	582.8006818033648	147.53	6.6763	147.53	147.01	153.69	0					349	139	4	0	0	0	0.59317	1	17747	17747		42.864	0	1	20317000	+		60676	31849	50070	50115	66453	66453					0.007005029181982536
VLDLARIVI	9	Unmodified	_VLDLARIVI_					0	0	0			REV__nc|ENSG00000159363|Q9NQ11-2|ATP13A2;REV__ENSG00000159363|ENST00000326735|ATP13A2	REV__ENSG00000159363|ENST00000326735|ATP13A2	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.3185729980469	2	506.331685	1010.64882	-0.71287	-0.00036095	3.0995	0.0015694	2.3867	0.0012084	506.33346234851973	58.981	0.36015	56.201	55.986	56.347	-2.7801					10	6	2	0	0	0	0.027392	1	4287	4287		85.359	11.385	1	14136	+		60677	28955;20612	50071	50116	66454	66454					0.14391783270752967
VLDLVLVLAQQ	11	Unmodified	_VLDLVLVLAQQ_					0	0	0		ENST00000506098.5_1_4:77065364-77065620:-|nuORF	ENST00000506098.5_1_4:77065364-77065620:-|nuORF	ENST00000506098.5_1_4:77065364-77065620:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	605.8720703125	2	605.873914	1209.73327	-4.4328	-0.0026857	1.2467	0.00075536	-3.186	-0.0019303	605.8745511795182	157.17	1.2501	156	155.65	156.91	-1.1707					83	31	4	0	0	0	0.72466	1	13545	13545		19.997	0.89325	1	204530			60678	12903	50072	50117	66455	66455					0.13679689296827746
VLDNHAFLI	9	Unmodified	_VLDNHAFLI_					0	0	0			REV__MCM4|p.A741Lfs*8|1|0.32|ENSG00000104738|chr8:47974817-47974818|-/TT|frameshift_variant	REV__MCM4|p.A741Lfs*8|1|0.32|ENSG00000104738|chr8:47974817-47974818|-/TT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.3201904296875	2	521.290017	1040.56548	-0.49202	-0.00025648	3.6366	0.0018957	3.1446	0.0016393	521.2920455043884	105.36	0.44122	105.36	105.04	105.49	0					14	9	2	0	0	0	0.02741	1	11820	11820		60.972	0	1	177970	+		60679	17677	50073	50118	66456	66456					0.0468204682290434
VLDNVKMNL	9	Unmodified	_VLDNVKMNL_					0	0	0		ENSG00000155393|ENST00000299192|HEATR3;nc|ENSG00000155393|Q7Z4Q2-2|HEATR3	ENSG00000155393|ENST00000299192|HEATR3	ENSG00000155393|ENST00000299192|HEATR3	MULTI-MSMS	OvCa99_classI_Rep5	1	523.29052734375	2	523.289159	1044.56377	1.4999	0.00078489	0.71596	0.00037465	2.2159	0.0011595	523.2893230822277	92.665	1.1662	92.665	92.301	93.468	0					71	27	3	0	0	0	0.03923	1	10024	10024		127.46	53.207	1	4444500			60680	5783	50074	50119	66457	66457					0.043266697426361134
VLDRPRHAF	9	Unmodified	_VLDRPRHAF_					0	0	0		ENST00000409652.4_1_22:36055657-36055768:+|nuORF	ENST00000409652.4_1_22:36055657-36055768:+|nuORF	ENST00000409652.4_1_22:36055657-36055768:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	555.7979125976562	2	555.811982	1109.60941	0.66716	0.00037081	2.4878	0.0013827	3.155	0.0017536	555.812713223507	66.835	0.69386	64.174	63.9	64.594	-2.661					18	13	2	0	0	0	0.027448	1	5205	5205		35.618	0	1	12576			60681	11532	50075	50120	66458	66458					0.0589907603989559
VLDSTGALAL	10	Unmodified	_VLDSTGALAL_					0	0	0		tr|A0A553SPE0|A0A553SPE0_NIACIDihydrolipoyldehydrogenaseOS=NialliacirculansOX=1397GN=lpdAPE=3SV=1	tr|A0A553SPE0|A0A553SPE0_NIACIDihydrolipoyldehydrogenaseOS=NialliacirculansOX=1397GN=lpdAPE=3SV=1	tr|A0A553SPE0|A0A553SPE0_NIACIDihydrolipoyldehydrogenaseOS=NialliacirculansOX=1397GN=lpdAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	480.2746276855469	2	480.274032	958.533512	0.012097	5.8097E-06	3.9734	0.0019083	3.9855	0.0019141	480.2738764674431	73.032	1.1838	73.032	72.533	73.717	0					99	29	6	0	0	0	0.28791	1	7146	7146		82.305	1.8504	1	5282700			60682	34033	50076	50121	66459	66459					0.05258634349092972
VLDSTGALAL	10	Unmodified	_VLDSTGALAL_					0	0	0		tr|A0A553SPE0|A0A553SPE0_NIACIDihydrolipoyldehydrogenaseOS=NialliacirculansOX=1397GN=lpdAPE=3SV=1	tr|A0A553SPE0|A0A553SPE0_NIACIDihydrolipoyldehydrogenaseOS=NialliacirculansOX=1397GN=lpdAPE=3SV=1	tr|A0A553SPE0|A0A553SPE0_NIACIDihydrolipoyldehydrogenaseOS=NialliacirculansOX=1397GN=lpdAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.2734680175781	2	480.274032	958.533512	-0.60525	-0.00029068	-0.16153	-7.758E-05	-0.76678	-0.00036826	480.27392490834393	80.008	1.8075	77.257	76.891	78.698	-2.7514					121	36	5	0	0	0	0.14489	1	6506	6506		102.77	11.997	1	3550800			60683	34033	50076	50121	66460	66460					0.05258634349092972
VLDSTGALALQ	11	Unmodified	_VLDSTGALALQ_					0	0	0		tr|A0A553SPE0|A0A553SPE0_NIACIDihydrolipoyldehydrogenaseOS=NialliacirculansOX=1397GN=lpdAPE=3SV=1	tr|A0A553SPE0|A0A553SPE0_NIACIDihydrolipoyldehydrogenaseOS=NialliacirculansOX=1397GN=lpdAPE=3SV=1	tr|A0A553SPE0|A0A553SPE0_NIACIDihydrolipoyldehydrogenaseOS=NialliacirculansOX=1397GN=lpdAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.3018188476562	2	544.303321	1086.59209	0.25493	0.00013876	1.5305	0.00083305	1.7854	0.0009718	544.3041307480145	84.127	1.5747	81.465	81.118	82.693	-2.6629					59	32	2	0	0	0	0.02567	1	7125	7125		36.447	0	1	159900			60684	34033	50077	50122	66461	66461					0.05225690923566617
VLDSTIKKVM	10	Unmodified	_VLDSTIKKVM_					0	0	0			REV__tr|A0A7D6VTQ1|A0A7D6VTQ1_9CLOTHeme-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17750PE=4SV=1	REV__tr|A0A7D6VTQ1|A0A7D6VTQ1_9CLOTHeme-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17750PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.330078125	2	567.333567	1132.65258	-2.3399	-0.0013275	-4.3394	-0.0024619	-6.6793	-0.0037894	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.70152	1	14794	14794		30.318	7.2752	1	241060	+		60685	31622	50078	50123	66462	66462					0.09156084982305401
VLDSVDVRL	9	Unmodified	_VLDSVDVRL_					0	0	0		ENSG00000169105|ENST00000306243|CHST14	ENSG00000169105|ENST00000306243|CHST14	ENSG00000169105|ENST00000306243|CHST14	MULTI-MSMS	OvCa99_classI_Rep5	1	508.2939147949219	2	508.292756	1014.57096	2.4691	0.001255	-0.46578	-0.00023675	2.0033	0.0010183	508.29226759993867	98.853	0.35754	98.853	98.638	98.996	0					23	8	3	0	0	0	0.075543	1	10898	10898		104.06	29.013	1	4029300			60686	6977	50079	50124	66463	66463					0.06425725614712974
VLDSVDVRL	9	Unmodified	_VLDSVDVRL_					0	0	0		ENSG00000169105|ENST00000306243|CHST14	ENSG00000169105|ENST00000306243|CHST14	ENSG00000169105|ENST00000306243|CHST14	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	508.292756	1014.57096	-1.2013	-0.0006106	0.082189	4.1776E-05	-1.1191	-0.00056883	508.292127444339	100.85	0.65129	98.584	98.187	98.838	-2.2665	-0.13455	0.00046856	NaN	104.06	21	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72497			60687	6977	50079	50124							0.06425725614712974
VLDVIPALEF	10	Unmodified	_VLDVIPALEF_					0	0	0			REV__ENSG00000039537|ENST00000337836|C6	REV__ENSG00000039537|ENST00000337836|C6	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.2981567382812	2	558.320983	1114.62741	2.546	0.0014215	-2.8331	-0.0015818	-0.28713	-0.00016031	559.3239104954507	108.49	0.60142	108.49	108.2	108.8	0					24	13	3	0	0	0	0.026665	1	12277	12277		26.693	0	1	203890	+		60688	16623	50080	50125	66464	66464					0.07468353451372423
VLDVPLTVK	9	Unmodified	_VLDVPLTVK_					0	0	0		nc|ENSG00000141994|Q96G46-2|DUS3L;ENSG00000141994|ENST00000309061|DUS3L;ENST00000589085.5_1_19:5787014-5789688:-|nuORF;nc|ENSG00000141994|Q96G46-3|DUS3L	nc|ENSG00000141994|Q96G46-2|DUS3L;nc|ENSG00000141994|Q96G46-3|DUS3L	nc|ENSG00000141994|Q96G46-3|DUS3L	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.8028869628906	2	492.310418	982.606283	-0.11433	-5.6288E-05	-2.9313	-0.0014431	-3.0456	-0.0014994	492.3088031362697	55.923	1.5724	52.628	52.361	53.934	-3.2944					51	30	4	0	0	0	0.027418	1	3703	3703		62.107	7.3311	1	265120			60689	4951;15067	50081	50126	66465	66465					0.11428388142508084
VLDVPLTVK	9	Unmodified	_VLDVPLTVK_					0	0	0		nc|ENSG00000141994|Q96G46-2|DUS3L;ENSG00000141994|ENST00000309061|DUS3L;ENST00000589085.5_1_19:5787014-5789688:-|nuORF;nc|ENSG00000141994|Q96G46-3|DUS3L	nc|ENSG00000141994|Q96G46-2|DUS3L;nc|ENSG00000141994|Q96G46-3|DUS3L	nc|ENSG00000141994|Q96G46-3|DUS3L	MULTI-MATCH	OvCa99_classI_Rep5	1		2	492.310418	982.606283	-0.41413	-0.00020388	-2.2404	-0.001103	-2.6545	-0.0013069	492.30927085949423	52.368	0.39558	52.368	52.17	52.566	0	-0.17797	0.0004943	NaN	62.107	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	217470			60690	4951;15067	50081	50126							0.11428388142508084
VLDYYPLQY	9	Unmodified	_VLDYYPLQY_					0	0	0			REV__nc|ENSG00000135503|P36896-5|ACVR1B	REV__nc|ENSG00000135503|P36896-5|ACVR1B	MULTI-MSMS	OvCa9_classI_Rep2	2	587.295166015625	2	587.294965	1172.57538	-1.7713	-0.0010403	1.8839	0.0011064	0.11261	6.6138E-05	587.2959419520926	118.58	1.9781	118.43	118.08	120.06	-0.14754					123	39	5	0	0	0	0.5811	1	11442	11442		34.173	2.6427	1	499840	+		60691	19293	50082	50127	66466	66466					-0.00400809962366111
VLEAQRLI	8	Unmodified	_VLEAQRLI_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-MSMS	OvCa9_classI_Rep2	2	471.2925720214844	2	471.292559	940.570566	0.33373	0.00015729	-0.47934	-0.00022591	-0.14561	-6.8623E-05	471.2921963660587	81.554	1.3417	79.906	79.514	80.856	-1.6485					81	25	4	0	0	0	0.59148	1	6930	6930		65.803	2.4969	1	678110	+		60692	18516	50083	50128	66467	66467					0.09790350685523208
VLEAQRLIAF	10	Unmodified	_VLEAQRLIAF_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	OvCa99_classI_Rep5	1	579.8414916992188	2	580.345323	1158.67609	0.17809	0.00010335	2.6329	0.001528	2.811	0.0016313	580.3466539230848	160.77	1.3039	160.77	160.21	161.51	0					39	25	2	0	0	0	0.026915	1	18814	18814		27.882	4.8398	1	40218	+		60693	18516	50084	50129	66468	66468					0.10310266811143265
VLECLFLI	8	Unmodified	_VLECLFLI_					0	0	0			REV__ENSG00000130385|ENST00000252677|BMP15	REV__ENSG00000130385|ENST00000252677|BMP15	MULTI-MSMS	OvCa99_classI_Rep5	1	475.27520751953125	2	475.274989	948.535426	0.4621	0.00021962	-3.5475	-0.001686	-3.0854	-0.0014664	475.27310259806933	105.63	2.1672	105.63	104.15	106.32	0					99	49	3	0	0	0	0.49583	1	11876	11876		77.944	0	1	1047800	+		60694	18945	50085	50130	66469	66469					0.05909971833352756
VLEDIQNSL	9	Unmodified	_VLEDIQNSL_					0	0	0		ENSG00000077009|ENST00000168977|NMRK2;nc|ENSG00000077009|Q9NPI5-3|NMRK2	ENSG00000077009|ENST00000168977|NMRK2	ENSG00000077009|ENST00000168977|NMRK2	MULTI-MSMS	OvCa9_classI_Rep2	2	515.7742309570312	2	515.774396	1029.53424	0.25666	0.00013238	-0.44158	-0.00022776	-0.18492	-9.5376E-05	515.7741357954794	109.36	1.83	109.19	108.52	110.35	-0.17237					68	36	2	0	0	0	0.22621	1	10294	10294		71.877	0	1	218150			60695	1563	50086	50131	66470	66470					0.02065428998139396
VLEDIQNSL	9	Unmodified	_VLEDIQNSL_					0	0	0		ENSG00000077009|ENST00000168977|NMRK2;nc|ENSG00000077009|Q9NPI5-3|NMRK2	ENSG00000077009|ENST00000168977|NMRK2	ENSG00000077009|ENST00000168977|NMRK2	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7739868164062	2	515.774396	1029.53424	0.53479	0.00027583	-0.76663	-0.00039541	-0.23184	-0.00011958	515.7739881743894	110.55	2.0527	108.95	108.49	110.54	-1.6011					79	38	3	0	0	0	0.18887	1	10187	10187		78.264	11.835	1	288720			60696	1563	50086	50131	66471	66471					0.02065428998139396
VLEEAQRK	8	Unmodified	_VLEEAQRK_					0	0	0		nc|ENSG00000134812|P27352-2|CBLIF;ENSG00000134812|ENST00000257248|CBLIF	nc|ENSG00000134812|P27352-2|CBLIF	nc|ENSG00000134812|P27352-2|CBLIF	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.8079833984375	2	486.777274	971.539994	-0.77597	-0.00037773	0.74367	0.000362	-0.032303	-1.5724E-05	486.77742859776953	37.619	0.27562	37.619	37.485	37.761	0					8	5	2	0	0	0	0.028476	1	2059	2059		37.159	6.6555	1	40350			60697	4332	50087	50132	66472	66472					0.05308572300475589
VLEENIDAK	9	Unmodified	_VLEENIDAK_					0	0	0			REV__tr|A0A553SP75|A0A553SP75_NIACIYicCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25795PE=3SV=1	REV__tr|A0A553SP75|A0A553SP75_NIACIYicCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25795PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7750244140625	2	515.774396	1029.53424	0.53479	0.00027583	-0.76663	-0.00039541	-0.23184	-0.00011958	515.7739881743894	110.55	2.0527	108.95	108.49	110.54	-1.6011					79	38	3	0	0	0	0.11471	1	10175	10175		93.195	5.499	1	288720	+		60698	30505	50088	50133	66473	66473					0.02065428998139396
VLEENIDAK	9	Unmodified	_VLEENIDAK_					0	0	0			REV__tr|A0A553SP75|A0A553SP75_NIACIYicCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25795PE=3SV=1	REV__tr|A0A553SP75|A0A553SP75_NIACIYicCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_25795PE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	515.774396	1029.53424	1.2353	0.00063714	0.15281	7.8817E-05	1.3881	0.00071596	515.774716077517	109.19	0.35212	109.19	109.02	109.37	0	0.13665	0.00084581	NaN	93.195	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114980	+		60699	30505	50088	50133							0.02065428998139396
VLEGSVPE	8	Unmodified	_VLEGSVPE_					0	0	0			REV__PBDC1|p.S17Lfs*22|1|0.16|ENSG00000102390|chrX:76173603-76173604|-/TGCAAGATGGCGG|frameshift_variant	REV__PBDC1|p.S17Lfs*22|1|0.16|ENSG00000102390|chrX:76173603-76173604|-/TGCAAGATGGCGG|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	415.220458984375	2	415.218726	828.422899	0.50297	0.00020884	1.1912	0.00049463	1.6942	0.00070347	415.2190721203063	56.319	1.344	56.319	56.094	57.438	0					51	31	3	0	0	0	0.65582	1	4688	4688		52.299	6.3472	1	3166600	+		60700	17555	50089	50134	66474	66474					0.001824143608587292
VLEKGEHQLK	10	Unmodified	_VLEKGEHQLK_					0	0	0			REV__nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	REV__nc|ENSG00000144036|Q9Y2D4-2|EXOC6B	MULTI-SECPEP	OvCa99_classI_Rep5	1	590.8543090820312	2	590.837862	1179.66117	1.257	0.0007427	2.046	0.0012088	3.303	0.0019515	590.8391260063128	149.81	1.8084	149.81	149.7	151.5	0					58	35	3	0	0	0	0.026931	1	17561	17561		37.812	13.609	1	124810	+		60701	19887	50090	50135	66475	66475					0.07852774943125951
VLELLGGEDE	10	Unmodified	_VLELLGGEDE_					0	0	0			REV__ENSG00000204851|ENST00000599531|PNMA8B	REV__ENSG00000204851|ENST00000599531|PNMA8B	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3223876953125	2	537.271687	1072.52882	2.1575	0.0011591	-2.5359	-0.0013625	-0.37841	-0.00020331	537.772135522544	102.89	0.55166	102.89	102.55	103.1	0					16	12	2	0	0	0	0.026802	1	11494	11494		34.173	0	1	302790	+		60702	23189	50091	50136	66476	66476					-0.0045429458432408865
VLENNQANL	9	Unmodified	_VLENNQANL_					0	0	0		ZEB1|p.P680Ffs*5|1|0.05|ENSG00000148516|chr10:31521372-31521373|TC/-|frameshift_variant;nc|ENSG00000148516|P37275-3|ZEB1;nc|ENSG00000148516|P37275-4|ZEB1;nc|ENSG00000148516|P37275-5|ZEB1;ENST00000488625.6_1_10:31676182-31816189:+|nuORF;nc|ENSG00000148516|P37275|ZEB1;ENSG00000148516|ENST00000424869|ZEB1	ZEB1|p.P680Ffs*5|1|0.05|ENSG00000148516|chr10:31521372-31521373|TC/-|frameshift_variant	ZEB1|p.P680Ffs*5|1|0.05|ENSG00000148516|chr10:31521372-31521373|TC/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	507.7628173828125	2	507.764363	1013.51417	0.78302	0.00039759	-3.9188	-0.0019898	-3.1358	-0.0015922	507.76227016858786	127.25	3.6353	126.18	123.46	127.1	-1.0715					121	69	3	0	0	0	0.42676	1	9986	9986		49.442	0	1	658450			60703	5417	50092	50137	66477	66477					0.007956780581821477
VLEPIPMEA	9	Unmodified	_VLEPIPMEA_					0	0	0		ENSG00000171587|ENST00000400454|DSCAM;KIAA0146-DSCAM|1|fusion	ENSG00000171587|ENST00000400454|DSCAM	ENSG00000171587|ENST00000400454|DSCAM	MULTI-MSMS	OvCa9_classI_Rep3	3	499.7650146484375	2	499.764986	997.515419	0.8461	0.00042285	-0.85495	-0.00042727	-0.0088517	-4.4238E-06	499.7649286167221	127.27	5.5139	126.2	124.35	129.86	-1.0715					229	108	5	0	0	0	0.29717	1	10093	10093		63.306	5.495	1	11725000			60704	7215	50093	50138	66478	66478					0.016561761027332977
VLETAVILL	9	Unmodified	_VLETAVILL_					0	0	0		ENSG00000258839|ENST00000555147|MC1R	ENSG00000258839|ENST00000555147|MC1R	ENSG00000258839|ENST00000555147|MC1R	MULTI-MSMS	OvCa99_classI_Rep5	1	485.81378173828125	2	485.812793	969.611034	1.4031	0.00068165	0.38188	0.00018552	1.785	0.00086717	485.8128285577155	147.57	4.5874	147.57	147.11	151.7	0					195	92	4	0	0	0	0.34496	1	17479	17479		57.811	9.8957	1	1725900			60705	9483	50094	50139	66479	66479					0.12501272285282994
VLEVASKAEL	10	Unmodified	_VLEVASKAEL_					0	0	0			REV__nc|ENSG00000174442|Q9H900-2|ZWILCH	REV__nc|ENSG00000174442|Q9H900-2|ZWILCH	MULTI-MSMS	OvCa9_classI_Rep4_	4	530.310302734375	2	529.808239	1057.60193	-1.3206	-0.00069964	-2.8954	-0.001534	-4.216	-0.0022337	529.8038544668168	106.03	2.0556	104.01	103.55	105.6	-2.0161					158	39	6	0	0	0	0.44431	1	9650	9650		62.107	0	1	4614300	+		60706	21831	50095	50140	66480	66480					0.0754287892893899
VLEVRTPVLEQ	11	Unmodified	_VLEVRTPVLEQ_					0	0	0		nc|ENSG00000204248|P13942-8|COL11A2;nc|ENSG00000204248|P13942-6|COL11A2;nc|ENSG00000204248|P13942-7|COL11A2;nc|ENSG00000204248|P13942-4|COL11A2;nc|ENSG00000204248|P13942-5|COL11A2;nc|ENSG00000204248|P13942-2|COL11A2;nc|ENSG00000204248|P13942-3|COL11A2;nc|ENSG00000204248|P13942|COL11A2;ENSG00000204248|ENST00000341947|COL11A2;ENST00000477772.1_1_6:33131457-33145620:-|nuORF	nc|ENSG00000204248|P13942-8|COL11A2	nc|ENSG00000204248|P13942-8|COL11A2	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8630981445312	2	641.871902	1281.72925	-5.5826	-0.0035833	-2.6606	-0.0017078	-8.2432	-0.0052911	641.8699076405258	158.89	0.54123	157.31	157.12	157.66	-1.5858					24	15	2	0	0	0	0.72521	1	15690	15690		12.812	0.60486	1	21255			60707	8960	50096	50141	66481	66481					0.09965599803103942
VLFELKLLL	9	Unmodified	_VLFELKLLL_					0	0	0		nc|ENSG00000102900|Q8N1F7-2|NUP93;ENSG00000102900|ENST00000308159|NUP93;NUP93|p.A632Qfs*4|1|0.04|ENSG00000102900|chr16:56836712-56836713|GC/-|frameshift_variant;NUP93|p.L692Yfs*5|1|0.15|ENSG00000102900|chr16:56839006-56839007|-/TA|frameshift_variant	nc|ENSG00000102900|Q8N1F7-2|NUP93	nc|ENSG00000102900|Q8N1F7-2|NUP93	MULTI-MSMS	OvCa99_classI_Rep5	1	544.3612670898438	2	544.359911	1086.70527	0.80347	0.00043738	1.1955	0.00065078	1.999	0.0010882	544.3604048753967	157.41	4.9209	157.41	156.9	161.82	0					252	99	4	0	0	0	0.055627	8	18434	18413;18434;18458;18481;18505;18527;18547;18571		115.49	33.189	1	913740			60708	2265	50097	50142	66482;66483;66484;66485;66486;66487;66488;66489	66483					0.1653841110742178
VLFENTDSVHL	11	Unmodified	_VLFENTDSVHL_					0	0	0		ENST00000495224.1_1_1:235295030-235299397:-|nuORF;ENSG00000188739|ENST00000408888|RBM34	ENST00000495224.1_1_1:235295030-235299397:-|nuORF	ENST00000495224.1_1_1:235295030-235299397:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	637.3317260742188	2	637.324785	1272.63502	2.7248	0.0017366	-0.31144	-0.00019849	2.4134	0.0015381	637.3244590663527	107.54	0.50163	107.54	107.27	107.77	0					28	11	3	0	0	0	0.059072	1	12140	12140		128.6	59.756	1	1713200			60709	8496	50098	50143	66490	66490					0.009604609810139664
VLFENTDSVHL	11	Unmodified	_VLFENTDSVHL_					0	0	0		ENST00000495224.1_1_1:235295030-235299397:-|nuORF;ENSG00000188739|ENST00000408888|RBM34	ENST00000495224.1_1_1:235295030-235299397:-|nuORF	ENST00000495224.1_1_1:235295030-235299397:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	637.324785	1272.63502	0.16149	0.00010292	-0.13868	-8.8382E-05	0.022809	1.4537E-05	637.3246258498548	108.34	0.91887	107.14	106.9	107.82	-1.1978	-0.13026	-0.00030225	NaN	128.6	30	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59984			60710	8496	50098	50143							0.009604609810139664
VLFENTDSVHL	11	Unmodified	_VLFENTDSVHL_					0	0	0		ENST00000495224.1_1_1:235295030-235299397:-|nuORF;ENSG00000188739|ENST00000408888|RBM34	ENST00000495224.1_1_1:235295030-235299397:-|nuORF	ENST00000495224.1_1_1:235295030-235299397:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	637.324785	1272.63502	-0.84583	-0.00053907	0.91002	0.00057998	0.064196	4.0914E-05	637.3254541815143	108.86	0.76309	107.13	106.92	107.68	-1.7256	-0.13636	0.0010345	NaN	128.6	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46048			60711	8496	50098	50143							0.009604609810139664
VLFETIPLV	9	Unmodified	_VLFETIPLV_					0	0	0			REV__ENSG00000166448|ENST00000339375|TMEM130	REV__ENSG00000166448|ENST00000339375|TMEM130	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7631225585938	2	515.812793	1029.61103	-0.50757	-0.00026181	-4.0984	-0.002114	-4.606	-0.0023758	515.8102582538481	60.156	0.59825	60.156	59.879	60.477	0					32	10	4	0	0	0	0.027462	1	5221	5221		40.573	21.469	1	2045300	+		60712	21195	50099	50144	66491	66491					0.09741272285282321
VLFFLAVIL	9	Unmodified	_VLFFLAVIL_					0	0	0		nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2;ENSG00000253910|ENST00000522605|PCDHGB2	nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.77001953125	2	517.836071	1033.65759	-0.72438	-0.00037511	-3.5049	-0.0018149	-4.2292	-0.0021901	517.8339533133721	82.637	0.97631	79.954	79.733	80.71	-2.6829					31	19	2	0	0	0	0.027462	1	6825	6825		21.702	0	1	91383			60713	9440	50100	50145	66492	66492					0.1421075690723228
VLFFYIIY	8	Unmodified	_VLFFYIIY_					0	0	0		tr|A0A7D6VT22|A0A7D6VT22_9CLOTOligosacchariderepeatunitpolymeraseOS=ClostridiumintestinaleOX=36845GN=HZF06_18900PE=4SV=1	tr|A0A7D6VT22|A0A7D6VT22_9CLOTOligosacchariderepeatunitpolymeraseOS=ClostridiumintestinaleOX=36845GN=HZF06_18900PE=4SV=1	tr|A0A7D6VT22|A0A7D6VT22_9CLOTOligosacchariderepeatunitpolymeraseOS=ClostridiumintestinaleOX=36845GN=HZF06_18900PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	538.8262329101562	2	539.304604	1076.59466	0.049647	2.6775E-05	2.9843	0.0016094	3.0339	0.0016362	539.3065108804533	92.014	0.9475	90.778	90.379	91.326	-1.2355					40	17	3	0	0	0	0.028476	1	8194	8194		33.493	0	1	134840			60714	35081	50101	50146	66493	66493					0.059421911191975596
VLFGLLREV	9	Unmodified	_VLFGLLREV_					0	0	0		ENSG00000140829|ENST00000268482|DHX38;ENST00000569935.1_1_16:72137048-72138114:+|nuORF	ENSG00000140829|ENST00000268482|DHX38	ENSG00000140829|ENST00000268482|DHX38	MULTI-MSMS	OvCa99_classI_Rep5	1	523.3248901367188	2	523.32386	1044.63317	0.76246	0.00039901	1.0916	0.00057126	1.8541	0.00097027	523.3243608926477	131.24	2.2597	131.24	130.87	133.13	0					84	47	4	0	0	0	0.030815	2	15231	15231;15255		134.81	33.21	1	1527700			60715	4875	50102	50147	66494;66495	66494					0.1126349675369056
VLFHLVLD	8	Unmodified	_VLFHLVLD_					0	0	0			REV__ENSG00000132718|ENST00000368324|SYT11	REV__ENSG00000132718|ENST00000368324|SYT11	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.75701904296875	2	478.284203	954.553853	2.5866	0.0012372	-4.1918	-0.0020049	-1.6052	-0.00076774	478.28210355661963	75.946	0.68222	75.946	75.723	76.405	0					32	16	3	0	0	0	0.028476	1	7622	7622		44.531	8.9128	1	1235000	+		60716	19101	50103	50148	66496	66496					0.07475849799561729
VLFIMKLRV	9	Unmodified	_VLFIMKLRV_					0	0	0			REV__ENST00000526129.5_1_1:76198579-76227103:+|nuORF	REV__ENST00000526129.5_1_1:76198579-76227103:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.8174438476562	2	559.859555	1117.70456	2.377	0.0013308	2.5335	0.0014184	4.9105	0.0027492	559.860439720391	133.67	0.18727	133.67	133.53	133.72	0					5	3	2	0	0	0	0.027462	1	15554	15554		18.324	0	1	23219	+		60717	27130	50104	50149	66497	66497					0.1504129318670948
VLFIPKNIS	9	Unmodified	_VLFIPKNIS_					0	0	0		tr|A0A553SR32|A0A553SR32_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00260PE=4SV=1	tr|A0A553SR32|A0A553SR32_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00260PE=4SV=1	tr|A0A553SR32|A0A553SR32_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00260PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7750244140625	2	515.81841	1029.62227	0.52081	0.00026864	-0.91811	-0.00047358	-0.3973	-0.00020494	515.817817401456	110.59	1.4205	108.99	108.75	110.17	-1.6011					54	26	3	0	0	0	0.027118	1	10175	10175		84.916	0	1	235400			60718	34226	50105	50150	66498	66498					0.10864094379417111
VLFIRDLGI	9	Unmodified	_VLFIRDLGI_					0	0	0			REV__ENSG00000168135|ENST00000303592|KCNJ4	REV__ENSG00000168135|ENST00000303592|KCNJ4	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3236083984375	2	523.32386	1044.63317	0.90245	0.00047227	-1.0468	-0.00054782	-0.14435	-7.5541E-05	523.3231203427081	131.19	1.3271	130.96	130.65	131.98	-0.22696					57	26	3	0	0	0	0.50149	1	12934	12934		42.396	1.618	1	194020	+		60719	21348	50106	50151	66499	66499					0.1126349675369056
VLFIVFLIL	9	Unmodified	_VLFIVFLIL_					0	0	0			REV__nc|ENSG00000249730|P0C629|OR10J4	REV__nc|ENSG00000249730|P0C629|OR10J4	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.8623657226562	2	538.859547	1075.70454	2.6704	0.0014389	2.5078	0.0013513	5.1781	0.0027903	538.8612720845362	133.45	7.6689	131.93	131.41	139.08	-1.5257					434	157	6	0	0	0	0.42921	2	13344	13344;13355		49.211	10.189	1	17348000	+		60720	29169	50107	50152	66500;66501	66500					0.16971616458363314
VLFIYGCCL	9	Unmodified	_VLFIYGCCL_					0	0	0		tr|A0A553SK69|A0A553SK69_NIACICytochromeCassemblyproteinOS=NialliacirculansOX=1397GN=CEQ21_18240PE=4SV=1	tr|A0A553SK69|A0A553SK69_NIACICytochromeCassemblyproteinOS=NialliacirculansOX=1397GN=CEQ21_18240PE=4SV=1	tr|A0A553SK69|A0A553SK69_NIACICytochromeCassemblyproteinOS=NialliacirculansOX=1397GN=CEQ21_18240PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	515.7593994140625	2	515.758649	1029.50275	0.89793	0.00046311	2.1686	0.0011185	3.0665	0.0015816	515.7596346022517	126.45	1.4315	126.22	125.75	127.18	-0.2359					75	28	3	0	0	0	0.22187	2	12336	12324;12336		72.62	11.648	1	408360			60721	33585	50108	50153	66502;66503	66503					-0.010825585611428323
VLFIYGCCL	9	Unmodified	_VLFIYGCCL_					0	0	0		tr|A0A553SK69|A0A553SK69_NIACICytochromeCassemblyproteinOS=NialliacirculansOX=1397GN=CEQ21_18240PE=4SV=1	tr|A0A553SK69|A0A553SK69_NIACICytochromeCassemblyproteinOS=NialliacirculansOX=1397GN=CEQ21_18240PE=4SV=1	tr|A0A553SK69|A0A553SK69_NIACICytochromeCassemblyproteinOS=NialliacirculansOX=1397GN=CEQ21_18240PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	515.757568359375	2	515.758649	1029.50275	1.669	0.00086082	1.5739	0.00081174	3.2429	0.0016726	515.759338830879	127.24	1.6255	126.17	125.91	127.54	-1.0715					72	31	4	0	0	0	0.32242	2	9962	9962;9967		60.404	2.5924	1	296160			60722	33585	50108	50153	66504;66505	66504					-0.010825585611428323
VLFKLPSLN	9	Unmodified	_VLFKLPSLN_					0	0	0			REV__ENST00000494412.1_1_3:99895157-99897229:+|nuORF	REV__ENST00000494412.1_1_3:99895157-99897229:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	515.7739868164062	2	515.81841	1029.62227	0.79708	0.00041115	-0.921	-0.00047507	-0.12392	-6.3921E-05	515.817744739493	110.13	1.5948	108.99	108.66	110.26	-1.1444					69	30	4	0	0	0	0.027232	1	7938	7938		87.754	8.3033	1	181560	+		60723	22414	50109	50154	66506	66506					0.10864094379417111
VLFLAAPPR	9	Unmodified	_VLFLAAPPR_					0	0	0		ENST00000448759.1_1_1:43352460-43353038:-|nuORF	ENST00000448759.1_1_1:43352460-43353038:-|nuORF	ENST00000448759.1_1_1:43352460-43353038:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.7997741699219	2	492.30547	982.596387	0.22844	0.00011246	-3.4315	-0.0016893	-3.203	-0.0015769	492.30301149684686	59.489	1.5659	56.709	56.137	57.703	-2.7801					39	29	2	0	0	0	0.027462	1	4413	4413		18.324	0	1	56337			60724	12022	50110	50155	66507	66507					0.10439244927795244
VLFLLNLRL	9	Unmodified	_VLFLLNLRL_					0	0	0			REV__tr|A0A553SKQ9|A0A553SKQ9_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_19210PE=3SV=1	REV__tr|A0A553SKQ9|A0A553SKQ9_NIACIserine-typeD-Ala-D-AlacarboxypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_19210PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3123168945312	2	550.863152	1099.71175	1.1964	0.00065906	1.4762	0.00081318	2.6726	0.0014722	550.8643299273607	147.22	0.29395	147.22	146.96	147.26	0					7	5	2	0	0	0	0.027462	1	17210	17210		21.96	4.5949	1	17790	+		60725	30146	50111	50156	66508	66508					0.16588349058793028
VLFLYQLV	8	Unmodified	_VLFLYQLV_					0	0	0		tr|A0A553SFV7|A0A553SFV7_NIACINCS2familypermeaseOS=NialliacirculansOX=1397GN=CEQ21_09615PE=3SV=1	tr|A0A553SFV7|A0A553SFV7_NIACINCS2familypermeaseOS=NialliacirculansOX=1397GN=CEQ21_09615PE=3SV=1	tr|A0A553SFV7|A0A553SFV7_NIACINCS2familypermeaseOS=NialliacirculansOX=1397GN=CEQ21_09615PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	497.8300476074219	2	497.802229	993.589904	-0.69606	-0.0003465	-2.5804	-0.0012846	-3.2765	-0.001631	497.8007166147045	89.473	1.1158	87.372	87.123	88.239	-2.101					34	21	3	0	0	0	0.028476	1	5598	5598		65.897	8.0862	1	45297			60726	33082	50112	50157	66509	66509					0.09285306976414631
VLFLYQLV	8	Unmodified	_VLFLYQLV_					0	0	0		tr|A0A553SFV7|A0A553SFV7_NIACINCS2familypermeaseOS=NialliacirculansOX=1397GN=CEQ21_09615PE=3SV=1	tr|A0A553SFV7|A0A553SFV7_NIACINCS2familypermeaseOS=NialliacirculansOX=1397GN=CEQ21_09615PE=3SV=1	tr|A0A553SFV7|A0A553SFV7_NIACINCS2familypermeaseOS=NialliacirculansOX=1397GN=CEQ21_09615PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	497.802229	993.589904	0.32001	0.0001593	-3.6906	-0.0018372	-3.3706	-0.0016779	497.80037011914044	89.92	1.0592	87.345	87.05	88.11	-2.575	-0.013377	-0.00062617	NaN	65.897	34	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29181			60727	33082	50112	50157							0.09285306976414631
VLFNKVLVN	9	Unmodified	_VLFNKVLVN_					0	0	0		ENSG00000132205|ENST00000254528|EMILIN2;ENST00000308080.9_1_18:2906258-2913399:+|nuORF	ENSG00000132205|ENST00000254528|EMILIN2	ENSG00000132205|ENST00000254528|EMILIN2	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3234252929688	2	523.32386	1044.63317	0.90245	0.00047227	-1.0468	-0.00054782	-0.14435	-7.5541E-05	523.3231203427081	131.19	1.3271	130.96	130.65	131.98	-0.22696					57	26	3	0	0	0	0.34496	1	12928	12928		57.811	0	1	194020			60728	4117	50113	50158	66510	66510					0.1126349675369056
VLFPKLPVL	9	Unmodified	_VLFPKLPVL_					0	0	0			REV__ENST00000505896.5_1_5:49695109-49707239:-|nuORF	REV__ENST00000505896.5_1_5:49695109-49707239:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.3270263671875	2	513.341521	1024.66849	-0.66672	-0.00034225	3.7095	0.0019042	3.0427	0.001562	513.3439063302731	67.578	0.34726	64.917	64.693	65.041	-2.661					11	6	2	0	0	0	0.027373	1	5295	5295		60.294	26.778	1	17476	+		60729	21549	50114	50159	66511	66511					0.15714159281492357
VLFPVNLQL	9	Unmodified	_VLFPVNLQL_					0	0	0		nc|ENSG00000203710|P17927|CR1;ENSG00000203710|ENST00000367049|CR1;ENST00000436595.1_1_1:207669690-207743292:+|nuORF;ENST00000434033.5_1_1:207669690-207707642:+|nuORF;ENST00000367050.8_1_1:207669597-207732429:+|nuORF	nc|ENSG00000203710|P17927|CR1	nc|ENSG00000203710|P17927|CR1	MULTI-MSMS	OvCa99_classI_Rep5	1	521.8192138671875	2	521.81841	1041.62227	-0.055472	-2.8946E-05	0.24878	0.00012982	0.19331	0.00010087	521.8183716191751	161.91	0.66348	161.91	161.61	162.28	0					26	12	3	0	0	0	0.13154	1	18979	18979		88.643	26.535	1	129310			60730	8925	50115	50160	66512	66512					0.10312094379423797
VLFPVSLML	9	Unmodified	_VLFPVSLML_					0	0	0			REV__SSTR1|p.F296Lfs*9|1|0.76|ENSG00000139874|chr14:38210275-38210275|T/-|frameshift_variant	REV__SSTR1|p.F296Lfs*9|1|0.76|ENSG00000139874|chr14:38210275-38210275|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.80291748046875	2	509.803914	1017.59328	2.0238	0.0010317	-2.3362	-0.001191	-0.31239	-0.00015926	509.80258654056354	136.53	4.9049	134.99	133.61	138.51	-1.5437					290	101	5	0	0	0	0.64339	1	13385	13385		26.796	0	1	173450	+		60731	19639	50116	50161	66513	66513					0.08518233758763927
VLFQGLVVY	9	Unmodified	_VLFQGLVVY_					0	0	0			REV__ENST00000524628.1_1_11:65770029-65771240:+|nuORF	REV__ENST00000524628.1_1_11:65770029-65771240:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.2982177734375	2	519.305136	1036.59572	0.21735	0.00011287	-4.4217	-0.0022962	-4.2044	-0.0021834	519.302749267208	70.108	1.1571	67.538	67.165	68.322	-2.5707					43	22	2	0	0	0	0.027462	1	5656	5656		18.324	0	1	576550	+		60732	27103	50117	50162	66514	66514					0.07888405488097305
VLFQRFVM	8	Unmodified	_VLFQRFVM_					0	0	0			REV__RAB33B-SEC24D|1|fusion	REV__RAB33B-SEC24D|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.3081665039062	2	520.291505	1038.56846	-0.8344	-0.00043413	2.5661	0.0013351	1.7317	0.000901	520.2926314548631	61.059	1.5053	58.289	57.819	59.324	-2.7702					53	28	2	0	0	0	0.028476	1	4488	4488		28.254	0	1	159910	+		60733	20207	50118	50163	66515	66515					0.05071598676067879
VLFRFAPE	8	Unmodified	_VLFRFAPE_					0	0	0			REV__ENSG00000164294|ENST00000503787|GPX8	REV__ENSG00000164294|ENST00000503787|GPX8	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.7727966308594	2	489.774003	977.533452	2.0807	0.0010191	3.7541	0.0018387	5.8348	0.0028577	489.77563161325145	98.743	0.53001	98.743	98.506	99.036	0					27	12	3	0	0	0	0.028476	1	10855	10855		24.203	0	1	2360000	+		60734	20968	50119	50164	66516	66516					0.04378679139745145
VLFSAVTWLL	10	Unmodified	_VLFSAVTWLL_					0	0	0			REV__ENSG00000124143|ENST00000373345|ARHGAP40	REV__ENSG00000124143|ENST00000373345|ARHGAP40	MULTI-MSMS	OvCa9_classI_Rep4_	4	574.8389892578125	2	574.839342	1147.66413	-0.87532	-0.00050317	-3.2918	-0.0018922	-4.1671	-0.0023954	574.8373813616681	91.362	5.8049	88.819	88.449	94.254	-2.5425					226	116	5	0	0	0	0.56767	1	7933	7933		45.952	7.1983	1	3993100	+		60735	18664	50120	50165	66517	66517					0.0962065006795001
VLFSGILFAL	10	Unmodified	_VLFSGILFAL_					0	0	0		tr|A0A553SS98|A0A553SS98_NIACICelldivisionproteinFtsQOS=NialliacirculansOX=1397GN=CEQ21_02710PE=4SV=1	tr|A0A553SS98|A0A553SS98_NIACICelldivisionproteinFtsQOS=NialliacirculansOX=1397GN=CEQ21_02710PE=4SV=1	tr|A0A553SS98|A0A553SS98_NIACICelldivisionproteinFtsQOS=NialliacirculansOX=1397GN=CEQ21_02710PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3311157226562	2	540.328611	1078.64267	0.34656	0.00018726	2.5593	0.0013829	2.9059	0.0015701	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.62668	1	13868	13868		38.806	0	1	342200			60736	34348	50121	50166	66518	66518					0.1064926503922834
VLFSPLPRS	9	Unmodified	_VLFSPLPRS_					0	0	0			REV__ENST00000370566.7_1_1:86861873-86861948:-|nuORF	REV__ENST00000370566.7_1_1:86861873-86861948:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	508.30230712890625	2	508.300384	1014.58622	0.17446	8.8677E-05	2.4872	0.0012642	2.6616	0.0013529	508.3016033253037	81.716	3.6233	80.067	78.915	82.538	-1.6485					135	71	4	0	0	0	0.44294	1	6917	6917		47.916	0	1	1275400	+		60737	24964	50122	50167	66519	66519					0.07950637202566213
VLFSVCLIML	10	Unmodified	_VLFSVCLIML_					0	0	0			REV__nc|ENSG00000086717|O14829-4|PPEF1	REV__nc|ENSG00000086717|O14829-4|PPEF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.2752685546875	2	569.324156	1136.63376	-0.068333	-3.8903E-05	3.8446	0.0021888	3.7763	0.0021499	569.3241223067598	56.585	0.41074	56.585	56.422	56.833	0					11	9	2	0	0	0	0.026552	1	4738	4738		63.306	9.9548	1	102420	+		60738	17151	50123	50168	66520	66520					0.07090832086896626
VLFTGLIILSY	11	Unmodified	_VLFTGLIILSY_					0	0	0			REV__tr|A0A553SR01|A0A553SR01_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00030PE=4SV=1	REV__tr|A0A553SR01|A0A553SR01_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_00030PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8685913085938	2	619.873382	1237.73221	-3.8587	-0.0023919	-2.4761	-0.0015349	-6.3348	-0.0039268	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.72473	1	15146	15146		19.104	0	1	492670	+		60739	30676	50124	50169	66521	66521					0.12285474927966789
VLFTGREFFV	10	Unmodified	_VLFTGREFFV_					0	0	0		ENSG00000213722|ENST00000375789|DDAH2;nc|ENSG00000153904|O94760-2|DDAH1;ENST00000480913.5_1_6:31695016-31697893:-|nuORF;ENSG00000153904|ENST00000284031|DDAH1	ENSG00000213722|ENST00000375789|DDAH2;ENSG00000153904|ENST00000284031|DDAH1	ENSG00000213722|ENST00000375789|DDAH2	MULTI-MSMS	OvCa99_classI_Rep5	1	607.8331298828125	2	607.832049	1213.64954	1.7983	0.0010931	0.42414	0.00025781	2.2225	0.0013509	607.8319669178014	127.07	0.36028	127.07	126.91	127.27	0					15	7	3	0	0	0	0.28422	1	14702	14702		82.75	3.0379	1	387590			60740	9143;5700	50125	50170	66522	66522					0.05126577919781994
VLFTGVKEV	9	Unmodified	_VLFTGVKEV_					0	0	0		ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENSG00000089006|ENST00000377759|SNX5	ENST00000490175.5_1_20:17923003-17949420:-|nuORF	ENST00000490175.5_1_20:17923003-17949420:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	496.2965393066406	2	496.294768	990.574983	2.9004	0.0014395	-0.51956	-0.00025785	2.3809	0.0011816	496.2943233264119	89.773	0.58523	89.773	89.516	90.101	0					31	13	3	0	0	0	0.060996	1	9596	9596		112.41	35.637	1	913270			60741	1803	50126	50171	66523	66523					0.07931815108429419
VLFTGVKEV	9	Unmodified	_VLFTGVKEV_					0	0	0		ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENSG00000089006|ENST00000377759|SNX5	ENST00000490175.5_1_20:17923003-17949420:-|nuORF	ENST00000490175.5_1_20:17923003-17949420:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	496.294768	990.574983	1.6003	0.00079422	-2.5345	-0.0012579	-0.93418	-0.00046363	496.29329995635027	90.788	1.3139	89.486	88.68	89.994	-1.302	-0.086218	-0.0023624	NaN	112.41	53	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62244			60742	1803	50126	50171							0.07931815108429419
VLFTGVKEV	9	Unmodified	_VLFTGVKEV_					0	0	0		ENST00000490175.5_1_20:17923003-17949420:-|nuORF;ENSG00000089006|ENST00000377759|SNX5	ENST00000490175.5_1_20:17923003-17949420:-|nuORF	ENST00000490175.5_1_20:17923003-17949420:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	496.294768	990.574983	-1.0564	-0.0005243	0.51941	0.00025778	-0.53702	-0.00026652	496.2948446770008	91.482	1.2095	89.458	88.879	90.089	-2.0241	-0.11418	0.00066888	NaN	112.41	51	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109880			60743	1803	50126	50171							0.07931815108429419
VLFTLLYKIL	10	Unmodified	_VLFTLLYKIL_					0	0	0		ENSG00000144357|ENST00000272793|UBR3;nc|ENSG00000144357|Q6ZT12-4|UBR3	ENSG00000144357|ENST00000272793|UBR3	ENSG00000144357|ENST00000272793|UBR3	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.2264709472656	3	408.265171	1221.77368	0.61697	0.00025189	-4.4023	-0.0017973	-3.7853	-0.0015454	408.26312807635037	38.125	0.18266	38.125	38.024	38.207	0					5	3	2	0	0	0	0.027193	1	2134	2134		16.717	0	1	12822			60744	5144	50127	50172	66524	66524					0.17166655687287857
VLFVDRVAP	9	Unmodified	_VLFVDRVAP_					0	0	0		ENST00000272793.9_1_2:170814982-170843277:+|nuORF	ENST00000272793.9_1_2:170814982-170843277:+|nuORF	ENST00000272793.9_1_2:170814982-170843277:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.30267333984375	2	508.300384	1014.58622	-0.76419	-0.00038844	3.4837	0.0017707	2.7195	0.0013823	508.30206007936306	82.679	2.0447	79.996	79.298	81.343	-2.6829					138	41	5	0	0	0	0.29717	1	6881	6881		63.306	4.5243	1	2020600			60745	10001	50128	50173	66525	66525					0.07950637202554844
VLFVKGTN	8	Unmodified	_VLFVKGTN_					0	0	0		SLC5A7|p.L422I|1|0.09|ENSG00000115665|chr2:108010382-108010382|C/A|missense_variant;ENSG00000115665|ENST00000264047|SLC5A7	SLC5A7|p.L422I|1|0.09|ENSG00000115665|chr2:108010382-108010382|C/A|missense_variant	SLC5A7|p.L422I|1|0.09|ENSG00000115665|chr2:108010382-108010382|C/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	439.26153564453125	2	439.260728	876.506903	-1.0479	-0.0004603	0.96145	0.00042233	-0.086459	-3.7978E-05	439.2609968620854	71.844	2.2359	68.388	67.924	70.16	-3.4563					103	45	3	0	0	0	0.56195	1	5493	5493		71.296	5.4925	1	835890			60746	3118	50129	50174	66526	66526					0.06370990248433372
VLFVKGTN	8	Unmodified	_VLFVKGTN_					0	0	0		SLC5A7|p.L422I|1|0.09|ENSG00000115665|chr2:108010382-108010382|C/A|missense_variant;ENSG00000115665|ENST00000264047|SLC5A7	SLC5A7|p.L422I|1|0.09|ENSG00000115665|chr2:108010382-108010382|C/A|missense_variant	SLC5A7|p.L422I|1|0.09|ENSG00000115665|chr2:108010382-108010382|C/A|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	439.260728	876.506903	1.4235	0.00062527	-1.3215	-0.00058046	0.102	4.4806E-05	439.26000916596564	70.921	1.3473	68.35	67.815	69.163	-2.5707	-0.018649	-0.0011011	NaN	71.296	64	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197150			60747	3118	50129	50174							0.06370990248433372
VLFVLVKDD	9	Unmodified	_VLFVLVKDD_					0	0	0			REV__ENSG00000218819|ENST00000405799|TDRD15	REV__ENSG00000218819|ENST00000405799|TDRD15	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.2982177734375	2	524.307875	1046.6012	0.62498	0.00032768	-0.32052	-0.00016805	0.30446	0.00015963	524.3070512449831	112.03	0.83836	111.89	111.62	112.46	-0.13961					24	16	2	0	0	0	0.027462	1	10627	10627		16.473	0	1	31289	+		60748	23329	50130	50175	66527	66527					0.07976084279880524
VLFVPAKQN	9	Unmodified	_VLFVPAKQN_					0	0	0			REV__tr|A0A7D6VQT4|A0A7D6VQT4_9CLOTGTPaseEraOS=ClostridiumintestinaleOX=36845GN=eraPE=3SV=1	REV__tr|A0A7D6VQT4|A0A7D6VQT4_9CLOTGTPaseEraOS=ClostridiumintestinaleOX=36845GN=eraPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7936096191406	2	508.300384	1014.58622	2.0901	0.0010624	2.88	0.0014639	4.9701	0.0025263	508.30172716358976	136.89	0.57559	136.89	136.58	137.16	0					19	11	2	0	0	0	0.027456	1	15990	15990		47.916	9.1095	1	42987	+		60749	31357	50131	50176	66528	66528					0.07950637202554844
VLFVVLPLYS	10	Unmodified	_VLFVVLPLYS_					0	0	0			REV__ENSG00000127366|ENST00000247883|TAS2R5	REV__ENSG00000127366|ENST00000247883|TAS2R5	MULTI-MSMS	OvCa9_classI_Rep2	2	575.3472900390625	2	575.349543	1148.68453	-4.8722	-0.0028032	-2.1116	-0.0012149	-6.9839	-0.0040182	575.3482857575835	154.87	1.1278	154.64	154.34	155.47	-0.22696					59	30	3	0	0	0	0.81992	1	15818	15818		16.473	1.6083	1	84487	+		60750	18813	50132	50177	66529	66529					0.11613820727779967
VLFYRLLKDHL	11	Unmodified	_VLFYRLLKDHL_					0	0	0		tr|A0A553SGR5|A0A553SGR5_NIACINAD-dependentmalicenzymeOS=NialliacirculansOX=1397GN=CEQ21_11380PE=3SV=1	tr|A0A553SGR5|A0A553SGR5_NIACINAD-dependentmalicenzymeOS=NialliacirculansOX=1397GN=CEQ21_11380PE=3SV=1	tr|A0A553SGR5|A0A553SGR5_NIACINAD-dependentmalicenzymeOS=NialliacirculansOX=1397GN=CEQ21_11380PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	472.94866943359375	3	472.950245	1415.82891	-0.67879	-0.00032104	-2.674	-0.0012647	-3.3528	-0.0015857	472.94894899114564	28.365	0.54736	28.365	28.091	28.638	0					25	10	4	0	0	0	0.66495	1	918	918		38.754	10.177	1	226940			60751	33186	50133	50178	66530	66530					0.13762462207751014
VLGACFYAI	9	Unmodified	_VLGACFYAI_					0	0	0		ENST00000568469.5_1_16:19049201-19056398:+|nuORF;nc|ENSG00000170537|Q7Z402-2|TMC7;ENSG00000170537|ENST00000304381|TMC7	ENST00000568469.5_1_16:19049201-19056398:+|nuORF	ENST00000568469.5_1_16:19049201-19056398:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.2959289550781	2	478.749139	955.483725	0.089164	4.2687E-05	2.0097	0.00096213	2.0988	0.0010048	478.75038562013737	98.559	0.97441	96.18	95.871	96.845	-2.3786					34	18	2	0	0	0	0.027462	1	8751	8751		21.702	0	1	42502			60752	7115	50134	50179	66531	66531					0.004202281394213969
VLGAVGMRI	9	Unmodified	_VLGAVGMRI_					0	0	0			REV__ENST00000472992.1_1_19:55089081-55098810:+|nuORF	REV__ENST00000472992.1_1_19:55089081-55098810:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	458.27734375	2	458.275855	914.537157	2.1455	0.00098325	1.9379	0.00088809	4.0834	0.0018713	458.27659438720013	29.056	0.74896	26.346	26.18	26.929	-2.7097					27	15	2	0	0	0	0.6959	1	670	670		19.36	0	1	55737	+		60753	23435	50135	50180	66532	66532					0.07647025641961136
VLGDTEGLNL	10	Unmodified	_VLGDTEGLNL_					0	0	0		nc|ENSG00000115221|P18564-2|ITGB6;ENSG00000115221|ENST00000283249|ITGB6	nc|ENSG00000115221|P18564-2|ITGB6	nc|ENSG00000115221|P18564-2|ITGB6	MULTI-MSMS	OvCa9_classI_Rep2	2	515.7747192382812	2	515.774396	1029.53424	0.25666	0.00013238	-0.44158	-0.00022776	-0.18492	-9.5376E-05	515.7741357954794	109.36	1.83	109.19	108.52	110.35	-0.17237					68	36	2	0	0	0	0.39172	1	10272	10272		69.628	0.78148	1	218150			60754	3071	50136	50181	66533	66533					0.02065428998139396
VLGEALGLALP	11	Unmodified	_VLGEALGLALP_					0	0	0		tr|A0A7D6VN02|A0A7D6VN02_9CLOTDihydroxy-aciddehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_15615PE=3SV=1;tr|A0A7D7AEQ8|A0A7D7AEQ8_9CLOTDihydroxy-aciddehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_03400PE=3SV=1	tr|A0A7D6VN02|A0A7D6VN02_9CLOTDihydroxy-aciddehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_15615PE=3SV=1	tr|A0A7D6VN02|A0A7D6VN02_9CLOTDihydroxy-aciddehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_15615PE=3SV=1	MSMS	OvCa9_classI_Rep3	3	526.8201293945312	2	526.82115	1051.62775	NaN	NaN	NaN	NaN	NaN	NaN	NaN	72.037	1	69.434	68.934	69.934	-2.6023								0	0	0	0.19306	1	3404	3404		40.778	3.6191	1				60755	34673	50137	50182	66534	66534					0.10399773171229754
VLGEFLKEI	9	Unmodified	_VLGEFLKEI_					0	0	0		ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.79345703125	2	524.307875	1046.6012	2.0883	0.0010949	-1.9471	-0.0010209	0.14125	7.4056E-05	524.306691438198	121.11	0.92683	121.11	120.87	121.8	0					29	20	3	0	0	0	0.027462	1	13922	13922		51.193	17.02	1	323510			60756	2276	50138	50183	66535	66535					0.07976084279903262
VLGEFLKEI	9	Unmodified	_VLGEFLKEI_					0	0	0		ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	MULTI-MATCH	OvCa9_classI_Rep3	3		2	524.307875	1046.6012	0.97787	0.0005127	-2.1493	-0.0011269	-1.1714	-0.00061418	524.3065454744558	122.22	0.68076	121.19	120.69	121.37	-1.0286	0.019165	-0.0011434	NaN	42.864	22	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78210			60757	2276	50138	50183							0.07976084279903262
VLGEFLKEI	9	Unmodified	_VLGEFLKEI_					0	0	0		ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	524.307875	1046.6012	-0.27906	-0.00014631	-0.46204	-0.00024225	-0.7411	-0.00038856	524.307504522323	122.58	1.0174	121.21	120.34	121.36	-1.3666	0.040545	0.00062591	NaN	42.864	22	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44977			60758	2276	50138	50183							0.07976084279903262
VLGGPNKEAN	10	Unmodified	_VLGGPNKEAN_					0	0	0			REV__ENST00000295851.9_2_2:204293378-204293543:+|nuORF	REV__ENST00000295851.9_2_2:204293378-204293543:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	499.7659606933594	2	499.766906	997.519259	0.42625	0.00021303	-4.146	-0.002072	-3.7197	-0.001859	499.76512722989173	126.31	4.05	126.07	125.5	129.55	-0.2359					192	81	3	0	0	0	0.32926	2	12315	12315;12351		77.318	8.5308	1	11682000	+		60759	24195	50139	50184	66536;66537	66536					0.020399819208023473
VLGHLLGLLTL	11	Unmodified	_VLGHLLGLLTL_					0	0	0			REV__ENSG00000117425|ENST00000372192|PTCH2	REV__ENSG00000117425|ENST00000372192|PTCH2	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.8372802734375	2	574.873717	1147.73288	1.1375	0.00065393	-2.0341	-0.0011693	-0.89656	-0.00051541	574.8729724528866	81.592	0.56521	81.592	81.455	82.02	0					23	13	3	0	0	0	0.025611	1	8399	8399		20.947	0	1	687510	+		60760	18351	50140	50185	66538	66538					0.16492314367656036
VLGILGKADL	10	Unmodified	_VLGILGKADL_					0	0	0			REV__tr|A0A7D7ADT0|A0A7D7ADT0_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00105PE=4SV=1	REV__tr|A0A7D7ADT0|A0A7D7ADT0_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00105PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.7358093261719	2	499.815867	997.617182	2.3481	0.0011736	-0.4612	-0.00023052	1.8869	0.00094311	499.8153609417523	75.991	0.43651	75.991	75.801	76.238	0					17	10	2	0	0	0	0.027056	1	7612	7612		20.947	0	1	387420	+		60761	32698	50141	50186	66539	66539					0.11827790516804271
VLGKEVLLL	9	Unmodified	_VLGKEVLLL_					0	0	0		nc|ENSG00000291033|Q9BZA5|TXLNGY	nc|ENSG00000291033|Q9BZA5|TXLNGY	nc|ENSG00000291033|Q9BZA5|TXLNGY	MULTI-MSMS	OvCa99_classI_Rep5	1	492.3301086425781	2	492.328611	982.642668	0.73144	0.00036011	1.0531	0.00051848	1.7845	0.00087858	492.3289718100356	157.57	0.84967	157.57	157.3	158.15	0					34	16	3	0	0	0	0.48324	1	18476	18476		44.117	0	1	85973			60762	15399	50142	50187	66540	66540					0.1506526503923169
VLGKIEKV	8	Unmodified	_VLGKIEKV_					0	0	0		nc|ENSG00000198589|P50851-2|LRBA;ENSG00000198589|ENST00000651943|LRBA;nc|ENSG00000198589|P50851|LRBA	nc|ENSG00000198589|P50851-2|LRBA	nc|ENSG00000198589|P50851-2|LRBA	MULTI-MSMS	OvCa99_classI_Rep5	1	443.2928466796875	2	443.292028	884.569503	0.82832	0.00036719	-1.1549	-0.00051195	-0.32656	-0.00014476	443.29148912060225	56.403	2.6018	56.403	56.094	58.696	0					125	61	3	0	0	0	0.48084	1	4776	4776		79.451	8.0731	1	44959000			60763	8832	50143	50188	66541	66541					0.12260136316604076
VLGKNGLLV	9	Unmodified	_VLGKNGLLV_					0	0	0		ENST00000531086.1_1_11:66012415-66012523:-|nuORF	ENST00000531086.1_1_11:66012415-66012523:-|nuORF	ENST00000531086.1_1_11:66012415-66012523:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	456.7952575683594	2	456.797478	911.580402	0.45168	0.00020633	-0.42864	-0.0001958	0.023038	1.0524E-05	456.7970931669125	115.48	1.1861	115.37	114.9	116.08	-0.11777					40	23	2	0	0	0	0.44294	1	11023	11023		47.916	1.9636	1	86613			60764	13301	50144	50189	66542	66542					0.1210753869089558
VLGKNGLLV	9	Unmodified	_VLGKNGLLV_					0	0	0		ENST00000531086.1_1_11:66012415-66012523:-|nuORF	ENST00000531086.1_1_11:66012415-66012523:-|nuORF	ENST00000531086.1_1_11:66012415-66012523:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	456.79656982421875	2	456.797478	911.580402	-0.66271	-0.00030272	0.84711	0.00038696	0.1844	8.4234E-05	456.7976692814701	116.51	2.4237	115.47	114.8	117.22	-1.0414					75	48	3	0	0	0	0.44294	1	8708	8708		47.916	0	1	83149			60765	13301	50144	50189	66543	66543					0.1210753869089558
VLGKRVATP	9	Unmodified	_VLGKRVATP_					0	0	0		sp|P08318|PP150_HCMVALargestructuralphosphoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL32PE=1SV=1;sp|Q6SW99|PP150_HCMVMTegumentproteinpp150OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL32PE=3SV=1	sp|P08318|PP150_HCMVALargestructuralphosphoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL32PE=1SV=1	sp|P08318|PP150_HCMVALargestructuralphosphoproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL32PE=1SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.78253173828125	2	470.800552	939.58655	-0.032805	-1.5445E-05	-0.57958	-0.00027287	-0.61239	-0.00028831	470.80005154008984	43.139	0.63736	43.139	42.97	43.608	0					25	14	3	0	0	0	0.027462	1	2820	2820		24.203	8.5665	1	225460			60766	32883	50145	50190	66544	66544					0.11434056922405489
VLGLLQNEET	10	Unmodified	_VLGLLQNEET_					0	0	0			REV__ENST00000360264.7_1_7:101897702-101897876:+|nuORF	REV__ENST00000360264.7_1_7:101897702-101897876:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.811279296875	2	558.300778	1114.587	2.6618	0.0014861	4.32	0.0024119	6.9819	0.003898	558.3032747316895	82.614	0.51202	82.614	82.394	82.906	0					16	11	2	0	0	0	0.026802	1	8564	8564		19.997	0	1	386380	+		60767	24825	50146	50191	66545	66545					0.034293870609417354
VLGLMWTI	8	Unmodified	_VLGLMWTI_					0	0	0		ENSG00000131018|ENST00000367255|SYNE1;nc|ENSG00000131018|Q8NF91-4|SYNE1;nc|ENSG00000131018|Q8NF91-7|SYNE1;SYNE1|p.A5284Rfs*31|1|0.11|ENSG00000131018|chr6:152323546-152323547|-/C|frameshift_variant;SYNE1|p.T4511Lfs*10|1|0.03|ENSG00000131018|chr6:152331155-152331155|G/-|frameshift_variant;SYNE1|p.R3674Tfs*53|1|0.12|ENSG00000131018|chr6:152353650-152353651|-/ATAATTGCTTCAAAAATTTGAG|frameshift_variant;nc|ENSG00000131018|Q8NF91-10|SYNE1;ENST00000461872.6_1_6:152697909-152949466:-|nuORF;nc|ENSG00000131018|Q8NF91-6|SYNE1;SYNE1|p.V2560Dfs*2|1|0.09|ENSG00000131018|chr6:152395549-152395550|-/T|frameshift_variant;nc|ENSG00000131018|Q8NF91-5|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	ENSG00000131018|ENST00000367255|SYNE1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	466.264404296875	2	466.767332	931.52011	-0.846	-0.00039488	-3.0943	-0.0014443	-3.9403	-0.0018392	466.76591174515653	71.306	1.1241	67.85	67.58	68.704	-3.4563					42	22	2	0	0	0	0.028476	1	5429	5429		21.702	0	1	160800			60768	4036	50147	50192	66546	66546					0.051611050361543676
VLGPTPLL	8	Unmodified	_VLGPTPLL_					0	0	0			REV__ENST00000324685.10_1_16:30785454-30785649:+|nuORF	REV__ENST00000324685.10_1_16:30785454-30785649:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	404.5705261230469	2	405.260197	808.50584	0.29755	0.00012058	1.8279	0.00074078	2.1255	0.00086137	405.26206489536577	50.067	0.24835	47.273	47.083	47.331	-2.794					5	4	2	0	0	0	0.028476	1	3193	3193		39.021	0	1	4113.2	+		60769	24475	50148	50193	66547	66547					0.09392775879518922
VLGRLLTLI	9	Unmodified	_VLGRLLTLI_					0	0	0		nc|ENSG00000067167|Q15629-2|TRAM1;ENSG00000067167|ENST00000262213|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	nc|ENSG00000067167|Q15629-2|TRAM1	MULTI-MSMS	OvCa99_classI_Rep5	1	499.3432922363281	2	499.342052	996.669552	1.8078	0.00090272	0.14997	7.4887E-05	1.9578	0.00097761	499.3419985600127	137.63	1.8206	137.63	137.35	139.17	0					73	38	3	0	0	0	0.22961	1	16077	16077		71.296	0	1	204070			60770	1368	50149	50194	66548	66548					0.17108373650421527
VLGRVPQSRIP	11	Unmodified	_VLGRVPQSRIP_					0	0	0		ENST00000262866.8_1_20:35274416-35274512:-|nuORF	ENST00000262866.8_1_20:35274416-35274512:-|nuORF	ENST00000262866.8_1_20:35274416-35274512:-|nuORF	MSMS	OvCa99_classI_Rep5	1	611.3682861328125	2	611.374946	1220.73534	NaN	NaN	NaN	NaN	NaN	NaN	NaN	157.6	1	157.6	157.1	158.1	0								0	0	0	0.19474	1	18470	18470		24.519	0	1				60771	9901	50150	50195	66549	66549					0.1338016282531953
VLGSLLNLP	9	Unmodified	_VLGSLLNLP_					0	0	0		ENST00000535593.5_1_12:21654733-21668638:+|nuORF;ENST00000539663.5_1_12:21661040-21668177:+|nuORF;ENSG00000111711|ENST00000229314|GOLT1B	ENST00000535593.5_1_12:21654733-21668638:+|nuORF	ENST00000535593.5_1_12:21654733-21668638:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.7591247558594	2	463.289485	924.564418	-2.5811	-0.0011958	2.4207	0.0011215	-0.16036	-7.4294E-05	463.2906235087393	49.534	0.77708	46.392	46.043	46.82	-3.1416					17	14	2	0	0	0	0.027462	1	2819	2819		24.203	0	1	11248			60772	2846	50151	50196	66550	66550					0.09911832453997249
VLGSVERLLG	10	Unmodified	_VLGSVERLLG_					0	0	0		nc|ENSG00000143374|Q9BW92-2|TARS2;ENSG00000143374|ENST00000369064|TARS2	nc|ENSG00000143374|Q9BW92-2|TARS2	nc|ENSG00000143374|Q9BW92-2|TARS2	MULTI-MSMS	OvCa9_classI_Rep2	2	521.8153686523438	2	521.816399	1041.61824	0.79827	0.00041655	-3.2909	-0.0017172	-2.4926	-0.0013007	521.8145751675044	30.789	0.8863	28.08	27.903	28.789	-2.7097					32	17	3	0	0	0	0.75313	1	893	893		24.519	2.5593	1	123530			60773	5044	50152	50197	66551	66551					0.09910004885705348
VLGTELLKAV	10	Unmodified	_VLGTELLKAV_					0	0	0			REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.7947998046875	2	521.828975	1041.6434	-0.57019	-0.00029754	-1.1686	-0.00060981	-1.7388	-0.00090735	521.8280260798231	77.618	0.92118	74.801	74.584	75.506	-2.8165					42	18	3	0	0	0	0.027088	1	6293	6293		14.137	1.3254	1	133450	+		60774	16748	50153	50198	66552	66552					0.12424059688282796
VLGTELLKAV	10	Unmodified	_VLGTELLKAV_					0	0	0			REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	REV__nc|ENSG00000061987|Q7Z3U7-2|MON2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.828975	1041.6434	-0.28121	-0.00014675	-1.8148	-0.000947	-2.096	-0.0010937	521.8277926465342	76.451	1.1985	74.597	74.308	75.506	-1.854	0.018923	-0.00065305	NaN	14.137	52	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117170	+		60775	16748	50153	50198							0.12424059688282796
VLGTKSWKGL	10	Unmodified	_VLGTKSWKGL_					0	0	0			REV__nc|ENSG00000111641|P46087-4|NOP2	REV__nc|ENSG00000111641|P46087-4|NOP2	MULTI-MSMS	OvCa9_classI_Rep2	2	544.8245239257812	2	544.826766	1087.63898	-4.363	-0.0023771	0.3268	0.00017805	-4.0362	-0.002199	544.82700234604	154.97	0.71278	154.74	154.48	155.19	-0.22696					46	16	4	0	0	0	0.69986	1	15824	15824		30.504	2.6214	1	60082	+		60776	28796	50154	50199	66553	66553					0.09866595265361866
VLGVCLCAWQH	11	Unmodified	_VLGVCLCAWQH_					0	0	0		ENST00000357461.6_1_14:67937818-67938346:-|nuORF	ENST00000357461.6_1_14:67937818-67938346:-|nuORF	ENST00000357461.6_1_14:67937818-67938346:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	613.8603515625	2	614.801911	1227.58927	1.3166	0.00080945	2.5614	0.0015748	3.878	0.0023842	614.8029032907825	130.99	0.61745	130.99	130.68	131.29	0					18	12	2	0	0	0	0.025853	1	15173	15173		35.618	14.781	1	126290			60777	10717	50155	50200	66554	66554					-0.015421790065829555
VLGVPPIPVV	10	Unmodified	_VLGVPPIPVV_					0	0	0		ENST00000461023.5_1_16:337901-338117:-|nuORF	ENST00000461023.5_1_16:337901-338117:-|nuORF	ENST00000461023.5_1_16:337901-338117:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	495.32403564453125	2	495.323328	988.632104	0.25011	0.00012389	-0.49017	-0.00024279	-0.24006	-0.00011891	495.3229391083299	105.42	1.8167	104.07	103.68	105.49	-1.3482					105	34	4	0	0	0	0.49566	1	7412	7412		54.765	4.7401	1	538610			60778	12166	50156	50201	66555	66555					0.13733282384794165
VLHEGTNFV	9	Unmodified	_VLHEGTNFV_					0	0	0		nc|ENSG00000166333|Q13418-3|ILK;nc|ENSG00000166333|Q13418-2|ILK;ENSG00000166333|ENST00000299421|ILK	nc|ENSG00000166333|Q13418-3|ILK	nc|ENSG00000166333|Q13418-3|ILK	MULTI-MSMS	OvCa99_classI_Rep5	1	508.2666320800781	2	508.263999	1014.51345	-0.062598	-3.1816E-05	0.32203	0.00016368	0.25943	0.00013186	508.26406718959277	71.091	0.55106	71.091	70.915	71.466	0					36	13	4	0	0	0	0.12365	1	6852	6852		90.777	8.4716	1	2628200			60779	6665	50157	50202	66556	66556					0.006768834091417375
VLHEGTNFV	9	Unmodified	_VLHEGTNFV_					0	0	0		nc|ENSG00000166333|Q13418-3|ILK;nc|ENSG00000166333|Q13418-2|ILK;ENSG00000166333|ENST00000299421|ILK	nc|ENSG00000166333|Q13418-3|ILK	nc|ENSG00000166333|Q13418-3|ILK	MULTI-MATCH	OvCa9_classI_Rep2	2		2	508.263999	1014.51345	-0.46854	-0.00023814	0.32455	0.00016496	-0.144	-7.3189E-05	508.26437581977837	73.584	1.1002	71.184	70.585	71.685	-2.3999	-0.039033	8.766E-05	NaN	90.777	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20296			60780	6665	50157	50202							0.006768834091417375
VLHEGTNFV	9	Unmodified	_VLHEGTNFV_					0	0	0		nc|ENSG00000166333|Q13418-3|ILK;nc|ENSG00000166333|Q13418-2|ILK;ENSG00000166333|ENST00000299421|ILK	nc|ENSG00000166333|Q13418-3|ILK	nc|ENSG00000166333|Q13418-3|ILK	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	508.263999	1014.51345	-0.47863	-0.00024327	-0.32843	-0.00016693	-0.80706	-0.0004102	508.2635334608955	74.625	1.2538	71.394	71	72.253	-3.2308	0.17091	-0.00057611	NaN	90.777	33	25	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57592			60781	6665	50157	50202							0.006768834091417375
VLHENCRK	8	Unmodified	_VLHENCRK_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa9_classI_Rep3	3	499.76483154296875	2	499.763643	997.512734	0.8461	0.00042285	1.8317	0.0009154	2.6778	0.0013382	499.7649286167221	127.27	5.5139	126.2	124.35	129.86	-1.0715					229	108	5	0	0	0	0.53531	1	10072	10072		73.975	16.163	1	11725000	+		60782	28942;32737	50158	50203	66557	66557					0.013877654884481672
VLHENGTLE	9	Unmodified	_VLHENGTLE_					0	0	0		nc|ENSG00000091129|Q92823-3|NRCAM;nc|ENSG00000091129|Q92823-4|NRCAM;nc|ENSG00000091129|Q92823-6|NRCAM;ENSG00000091129|ENST00000379028|NRCAM;nc|ENSG00000091129|Q92823-5|NRCAM;nc|ENSG00000091129|Q92823-2|NRCAM	nc|ENSG00000091129|Q92823-3|NRCAM	nc|ENSG00000091129|Q92823-3|NRCAM	MULTI-MSMS	OvCa9_classI_Rep2	2	506.2615661621094	2	506.258914	1010.50327	-0.0082329	-4.168E-06	-0.72144	-0.00036523	-0.72967	-0.0003694	506.2584999623091	80.238	2.521	78.542	77.819	80.34	-1.6951					182	49	6	0	0	0	0.16562	1	6799	6799		82.241	14.747	1	1626600			60783	1864	50159	50204	66558	66558					-0.0015572431607324688
VLHFLKNI	8	Unmodified	_VLHFLKNI_					0	0	0		nc|ENSG00000197653|Q8IVF4|DNAH10;ENSG00000197653|ENST00000673944|DNAH10;DNAH10|p.N3904Vfs*37|1|0.07|ENSG00000197653|chr12:123926777-123926778|-/GGTACAGAGAAGTCCCTGCC|frameshift_variant;DNAH10|p.R2161Nfs*35|1|0.03|ENSG00000197653|chr12:123861095-123861096|-/TAACAGTGAAGGGAAG|frameshift_variant;nc|ENSG00000197653|Q8IVF4-2|DNAH10;DNAH10|p.I1041Lfs*26|1|0.09|ENSG00000197653|chr12:123813493-123813493|A/-|frameshift_variant	nc|ENSG00000197653|Q8IVF4|DNAH10	nc|ENSG00000197653|Q8IVF4|DNAH10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.2933654785156	2	492.30547	982.596387	0.62847	0.0003094	1.4278	0.0007029	2.0562	0.0010123	492.3065482887181	83.99	0.29359	81.327	81.118	81.412	-2.6629					8	5	2	0	0	0	0.028476	1	6993	6993		15.636	6.1657	1	9234.1			60784	8733	50160	50205	66559	66559					0.10439244927806612
VLHHFKRVL	9	Unmodified	_VLHHFKRVL_					0	0	0			REV__nc|ENSG00000154328|Q969S2-4|NEIL2	REV__nc|ENSG00000154328|Q969S2-4|NEIL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.8375244140625	2	574.856193	1147.69783	0.99424	0.00057154	-1.2855	-0.00073897	-0.29124	-0.00016742	575.355998123441	81.676	0.32125	81.676	81.455	81.776	0					10	7	2	0	0	0	0.027462	1	8428	8428		25.45	6.0902	1	1217100	+		60785	20379	50161	50206	66560	66560					0.1298911635035438
VLHLVKRKR	9	Unmodified	_VLHLVKRKR_					0	0	0			REV__ENSG00000136237|ENST00000665637|RAPGEF5	REV__ENSG00000136237|ENST00000665637|RAPGEF5	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.8375244140625	2	574.890567	1147.76658	1.2218	0.00070241	-0.69335	-0.0003986	0.52847	0.00030381	574.890734129804	81.717	0.36449	81.717	81.572	81.937	0					13	8	3	0	0	0	0.027462	1	8428	8428		18.324	6.8134	1	335310	+		60786	19370	50162	50207	66561	66561					0.19860780650083143
VLHNKSIYL	9	Unmodified	_VLHNKSIYL_					0	0	0			REV__ENST00000492658.1_1_X:152771329-152774230:+|nuORF	REV__ENST00000492658.1_1_X:152771329-152774230:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.8187255859375	2	543.818941	1085.62333	-1.0476	-0.0005697	0.4417	0.0002402	-0.6059	-0.0003295	543.8192276601923	103.89	1.4672	101.77	101.43	102.9	-2.1192					89	27	4	0	0	0	0.31747	1	9405	9405		60.972	2.742	1	1545600	+		60787	22298	50163	50208	66562	66562					0.08394308748302137
VLHTAQHSV	9	Unmodified	_VLHTAQHSV_					0	0	0		ENST00000373313.2_1_20:39317299-39317872:-|nuORF	ENST00000373313.2_1_20:39317299-39317872:-|nuORF	ENST00000373313.2_1_20:39317299-39317872:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	496.26934814453125	2	496.269616	990.524678	-0.33447	-0.00016599	0.05809	2.8828E-05	-0.27638	-0.00013716	496.26957150343145	33.308	0.4955	33.308	33.087	33.583	0					19	9	3	0	0	0	0.29519	1	1523	1523		63.534	8.0296	1	200530			60788	11006	50164	50209	66563	66563					0.029037055032858916
VLIARPVYKHS	11	Unmodified	_VLIARPVYKHS_					0	0	0			REV__ENSG00000258947|ENST00000315491|TUBB3	REV__ENSG00000258947|ENST00000315491|TUBB3	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8822631835938	2	641.885147	1281.75574	-4.6434	-0.0029805	0.6524	0.00041876	-3.991	-0.0025618	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.72064	1	15569	15569		22.58	0.61977	1	543390	+		60789	23555	50165	50210	66564	66564					0.12613333485114708
VLIARPVYKHS	11	Unmodified	_VLIARPVYKHS_					0	0	0			REV__ENSG00000258947|ENST00000315491|TUBB3	REV__ENSG00000258947|ENST00000315491|TUBB3	MULTI-MSMS	OvCa9_classI_Rep3	3	641.882568359375	2	641.885147	1281.75574	-5.3554	-0.0034376	1.3541	0.00086916	-4.0013	-0.0025684	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.70142	1	13234	13234		29.17	5.6474	1	804890	+		60790	23555	50165	50210	66565	66565					0.12613333485114708
VLICISLMTS	10	Carbamidomethyl (C)	_VLIC(Carbamidomethyl (C))ISLMTS_	VLIC(1)ISLMTS		VLIC(53)ISLMTS		0	1	0		L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|191|1|anti-sense;L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|185|1|anti-sense;L1PA7_dup282|chr1:88818677-88820142:+|1.0289078366989055|0.4624574098713206|1.15|428.0|70|2|anti-sense;L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|191|1|anti-sense	L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|191|1|anti-sense	L1PA6_dup2301|chr6:12139363-12145531:+|1.565126959046357|0.4276956720776814|1.87|429.0|191|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	568.8098754882812	2	568.806328	1135.5981	1.116	0.00063479	2.5941	0.0014755	3.7101	0.0021103	568.807870244778	126.33	1.1001	125.26	125.07	126.17	-1.0715					36	20	2	0	0	0	0.50656	1	9877	9877		53.351	15.54	1	58868			60791	14721	50166	50211	66566	66566	168				0.03572749839236167
VLIDGIRDI	9	Unmodified	_VLIDGIRDI_					0	0	0			REV__nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	REV__nc|ENSG00000214944|Q8N1W1-4|ARHGEF28	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.3201599121094	2	507.303124	1012.5917	-0.21882	-0.00011101	1.1843	0.00060081	0.9655	0.0004898	507.3024828562956	59.296	0.79057	55.904	55.655	56.445	-3.392					17	15	2	0	0	0	0.027462	1	3998	3998		40.573	3.5441	1	30723	+		60792	23305	50167	50212	66567	66567					0.08590315994376851
VLIDPPIR	8	Unmodified	_VLIDPPIR_					0	0	0			REV__MAP3K9|p.Q696Sfs*20|1|0.12|ENSG00000006432|chr14:70733283-70733284|-/A|frameshift_variant	REV__MAP3K9|p.Q696Sfs*20|1|0.12|ENSG00000006432|chr14:70733283-70733284|-/A|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	461.7912292480469	2	461.789653	921.564752	2.322	0.0010723	0.2053	9.4806E-05	2.5273	0.0011671	461.78967546256064	96.596	1.3578	96.596	96.296	97.654	0					63	31	4	0	0	0	0.35163	1	10574	10574		97.473	8.8298	1	1962400	+		60793	16415	50168	50213	66568	66568					0.10083252173842538
VLIDPQWVL	9	Unmodified	_VLIDPQWVL_					0	0	0		ENSG00000113088|ENST00000231009|GZMK	ENSG00000113088|ENST00000231009|GZMK	ENSG00000113088|ENST00000231009|GZMK	MSMS	OvCa99_classI_Rep5	1	541.8163452148438	2	541.815867	1081.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	159.13	1	159.13	158.63	159.63	0								0	0	0	0.13464	1	18651	18651		66.429	0	1				60794	2948	50169	50214	66569	66569					0.07963790516805602
VLIDPVLET	9	Unmodified	_VLIDPVLET_					0	0	0		ENST00000595115.1_1_19:44030583-44031338:-|nuORF;ENSG00000105755|ENST00000292147|ETHE1	ENST00000595115.1_1_19:44030583-44031338:-|nuORF	ENST00000595115.1_1_19:44030583-44031338:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.7649841308594	2	499.792058	997.569563	0.86672	0.00043318	0.42852	0.00021417	1.2952	0.00064735	499.7927282815432	127.22	0.83331	126.15	125.91	126.75	-1.0715					25	15	3	0	0	0	0.02741	1	9952	9952		71.296	5.4925	1	56325			60795	2496	50170	50215	66570	66570					0.07068091525957243
VLIDYQRNV	9	Unmodified	_VLIDYQRNV_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OvCa99_classI_Rep5	1	560.3126831054688	2	560.31148	1118.60841	2.0901	0.0011711	-0.41768	-0.00023403	1.6724	0.00093708	560.3113062169448	80.829	1.4111	80.829	80.443	81.854	0					105	33	5	0	0	0	0.03923	2	8314	8286;8314		127.46	46.613	1	34594000			60796	1685	50171	50216	66571;66572	66572					0.05384816880314247
VLIDYQRNV	9	Unmodified	_VLIDYQRNV_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OvCa9_classI_Rep3	3	560.312744140625	2	560.31148	1118.60841	-1.3129	-0.00073563	0.43933	0.00024616	-0.87356	-0.00048947	560.311626192983	82.826	1.8919	80.529	80.187	82.079	-2.2963					94	39	4	0	0	0	0.075543	2	4707	4701;4707		104.06	34.429	1	913920			60797	1685	50171	50216	66573;66574	66574					0.05384816880314247
VLIDYQRNV	9	Unmodified	_VLIDYQRNV_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.3120727539062	2	560.31148	1118.60841	0.79687	0.00044649	-1.3526	-0.00075785	-0.55569	-0.00031136	560.3105709541911	83.027	1.2663	80.344	80.028	81.294	-2.6829					66	25	4	0	0	0	0.055627	3	6884	6884;6896;6911		115.49	49.691	1	1009400			60798	1685	50171	50216	66575;66576;66577	66575					0.05384816880314247
VLIDYQRNV	9	Unmodified	_VLIDYQRNV_					0	0	0		ENSG00000082898|ENST00000401558|XPO1;ENST00000461407.5_1_2:61712881-61715780:-|nuORF;ENST00000492182.5_1_2:61710065-61713073:-|nuORF;ENST00000428210.5_1_2:61705957-61719950:-|nuORF	ENSG00000082898|ENST00000401558|XPO1	ENSG00000082898|ENST00000401558|XPO1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	560.31148	1118.60841	0.86587	0.00048516	-1.3927	-0.00078036	-0.52686	-0.0002952	560.3105802718761	82.197	2.1496	80.549	79.971	82.121	-1.6485	-0.014092	-0.00072538	NaN	127.46	85	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	338530			60799	1685	50171	50216							0.05384816880314247
VLIECARREL	10	Carbamidomethyl (C)	_VLIEC(Carbamidomethyl (C))ARREL_	VLIEC(1)ARREL		VLIEC(60)ARREL		0	1	0		nc|ENSG00000138336|Q8NFU7-2|TET1;ENSG00000138336|ENST00000373644|TET1;nc|ENSG00000138336|Q8NFU7-3|TET1	nc|ENSG00000138336|Q8NFU7-2|TET1	nc|ENSG00000138336|Q8NFU7-2|TET1	MULTI-MSMS	OvCa9_classI_Rep3	3	420.23577880859375	3	420.236057	1257.68634	-0.48401	-0.0002034	-2.7883	-0.0011717	-3.2723	-0.0013751	420.2348652404624	92.172	2.6968	90.147	89.584	92.281	-2.0241					147	54	4	0	0	0	0.45822	1	5819	5819		60.118	7.1816	1	1866100			60800	4674	50172	50217	66578	66578	47				0.06780506474046888
VLIFHLGG	8	Unmodified	_VLIFHLGG_					0	0	0		HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|4|1|sense	HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|4|1|sense	HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|4|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	428.27569580078125	2	428.257988	854.501424	1.2797	0.00054803	1.3097	0.0005609	2.5894	0.0011089	428.2583612838397	102.04	0.51443	102.04	101.78	102.29	0					21	11	3	0	0	0	0.028476	1	11369	11369		16.705	6.5202	1	139830			60801	14437	50173	50218	66579	66579					0.0683531145662073
VLIGETKIY	9	Unmodified	_VLIGETKIY_					0	0	0		nc|ENSG00000116675|O75061-3|DNAJC6;nc|ENSG00000116675|O75061-4|DNAJC6;nc|ENSG00000116675|O75061|DNAJC6;ENSG00000116675|ENST00000371069|DNAJC6	nc|ENSG00000116675|O75061-3|DNAJC6	nc|ENSG00000116675|O75061-3|DNAJC6	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.2897338867188	2	518.307875	1034.6012	1.4152	0.00073351	0.080059	4.1495E-05	1.4953	0.00077501	518.3077734354781	126	0.56187	126	125.71	126.28	0					21	11	2	0	0	0	0.027462	1	14560	14560		24.203	0	1	186350			60802	3193	50174	50219	66580	66580					0.08528084279896575
VLIGSHPDL	9	Unmodified	_VLIGSHPDL_					0	0	0		ENSG00000140961|ENST00000393306|OSGIN1	ENSG00000140961|ENST00000393306|OSGIN1	ENSG00000140961|ENST00000393306|OSGIN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.29022216796875	2	475.768917	949.523281	1.4183	0.0006748	-1.1823	-0.00056249	0.23605	0.0001123	475.76816712327224	97.337	0.50816	94.959	94.708	95.216	-2.3786					9	9	2	0	0	0	0.027462	1	8619	8619		40.573	10.069	1	6274.9			60803	4883	50175	50220	66581	66581					0.04650071414505419
VLIILPLLF	9	Unmodified	_VLIILPLLF_					0	0	0			REV__ENST00000429243.6_1_12:53840105-53840219:+|nuORF	REV__ENST00000429243.6_1_12:53840105-53840219:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.3116455078125	2	520.859547	1039.70454	-0.9154	-0.00047679	3.7863	0.0019721	2.8709	0.0014953	520.8607833808993	83.95	0.31499	81.689	81.566	81.881	-2.261					8	6	2	0	0	0	0.027462	1	4822	4822		39.021	0	1	21700	+		60804	25699	50176	50221	66582	66582					0.18627616458365992
VLIINPRIN	9	Unmodified	_VLIINPRIN_					0	0	0			REV__ENST00000463221.2_1_20:46318868-46386107:-|nuORF	REV__ENST00000463221.2_1_20:46318868-46386107:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.2871704101562	2	526.334759	1050.65496	-0.70503	-0.00037108	-0.16784	-8.834E-05	-0.87287	-0.00045942	526.334583605038	103.12	1.0501	101.6	101.26	102.31	-1.5211					33	19	3	0	0	0	0.027462	1	7196	7196		17.365	6.4994	1	50008	+		60805	19462	50177	50222	66583	66583					0.13166301502269562
VLIITFCIV	9	Unmodified	_VLIITFCIV_					0	0	0		ENSG00000139514|ENST00000380752|SLC7A1;ENST00000473577.1_1_13:30091265-30093642:-|nuORF	ENSG00000139514|ENST00000380752|SLC7A1	ENSG00000139514|ENST00000380752|SLC7A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.8130798339844	2	510.811739	1019.60893	1.1975	0.00061168	2.2274	0.0011378	3.4249	0.0017495	510.81271666238405	129.4	1.3345	127.95	127.5	128.83	-1.4565					56	26	3	0	0	0	0.59983	1	12383	12383		31.955	1.6371	1	185240			60806	4778	50178	50223	66584	66584					0.09990520275812287
VLIKDTTAL	9	Unmodified	_VLIKDTTAL_					0	0	0		ENSG00000138095|ENST00000260665|LRPPRC	ENSG00000138095|ENST00000260665|LRPPRC	ENSG00000138095|ENST00000260665|LRPPRC	MULTI-MSMS	OvCa9_classI_Rep2	2	487.298583984375	2	487.30005	972.585547	-2.0582	-0.0010029	-0.86892	-0.00042342	-2.9271	-0.0014264	487.29953188884207	145.86	1.1405	145.64	145.18	146.32	-0.22696					53	22	3	0	0	0	0.56889	1	14705	14705		35.618	2.1027	1	104880			60807	4658	50179	50224	66585	66585					0.0981579776282615
VLIKEEDAVI	10	Unmodified	_VLIKEEDAVI_					0	0	0		TEK|p.K215Nfs*10|1|0.11|ENSG00000120156|chr9:27172629-27172641|GAAGTGGGGACCT/-|frameshift_variant;nc|ENSG00000120156|Q02763-3|TEK;nc|ENSG00000120156|Q02763-2|TEK;ENSG00000120156|ENST00000380036|TEK	TEK|p.K215Nfs*10|1|0.11|ENSG00000120156|chr9:27172629-27172641|GAAGTGGGGACCT/-|frameshift_variant	TEK|p.K215Nfs*10|1|0.11|ENSG00000120156|chr9:27172629-27172641|GAAGTGGGGACCT/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.8175048828125	2	564.829172	1127.64379	2.895	0.0016352	2.0736	0.0011712	4.9686	0.0028064	564.8296903277136	86.332	0.43776	86.332	86.073	86.511	0					23	10	3	0	0	0	0.026891	1	9067	9067		47.657	8.6358	1	334900			60808	3417	50180	50225	66586	66586					0.0850743461746788
VLIKKKSYN	9	Unmodified	_VLIKKKSYN_					0	0	0			REV__tr|A0A553SIR7|A0A553SIR7_NIACIZIPfamilymetaltransporterOS=NialliacirculansOX=1397GN=CEQ21_15370PE=4SV=1	REV__tr|A0A553SIR7|A0A553SIR7_NIACIZIPfamilymetaltransporterOS=NialliacirculansOX=1397GN=CEQ21_15370PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	546.8399658203125	2	546.842416	1091.67028	-4.8246	-0.0026383	1.033	0.00056488	-3.7916	-0.0020734	546.8429110027589	158.57	1.287	158.34	158.06	159.35	-0.22697					77	26	5	0	0	0	0.69123	1	16119	16119		20.947	0	1	487190	+		60809	29920	50181	50226	66587	66587					0.12811168299458586
VLILLHTVL	9	Unmodified	_VLILLHTVL_					0	0	0		ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	ENSG00000204442|ENST00000375915|NALF1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.8120422363281	2	510.844428	1019.6743	1.1887	0.00060725	-2.0988	-0.0010722	-0.91006	-0.0004649	510.8432458866713	129.47	0.64246	128.01	127.64	128.29	-1.4565					16	12	2	0	0	0	0.027462	1	12407	12407		33.516	1.5607	1	11386			60810	8986	50182	50227	66588	66588					0.16525257793159653
VLILLISLLG	10	Unmodified	_VLILLISLLG_					0	0	0			REV__ENSG00000134569|ENST00000378623|LRP4	REV__ENSG00000134569|ENST00000378623|LRP4	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2836303710938	2	527.367736	1052.72092	-0.58584	-0.00030895	3.4689	0.0018294	2.8831	0.0015204	527.3705394402973	51.647	0.28413	51.647	51.504	51.788	0					11	6	2	0	0	0	0.027177	1	4006	4006		7.1934	0	1	200780	+		60811	19211	50183	50228	66589	66589					0.1966669762446145
VLILQIQTPDV	11	Unmodified	_VLILQIQTPDV_					0	0	0			REV__ENST00000289316.2_1_6:26171232-26171412:+|nuORF	REV__ENST00000289316.2_1_6:26171232-26171412:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8690795898438	2	619.871371	1237.72819	-1.8762	-0.001163	-1.2328	-0.00076421	-3.109	-0.0019272	619.8704234308321	147.79	3.8764	146.35	144.25	148.12	-1.4351					189	77	4	0	0	0	0.7246	1	14703	14703		20.837	0.84038	1	269210	+		60812	24147	50184	50229	66590	66590					0.11883385434202864
VLINQIKSSLL	11	Unmodified	_VLINQIKSSLL_					0	0	0		tr|A0A553SM66|A0A553SM66_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21985PE=4SV=1	tr|A0A553SM66|A0A553SM66_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21985PE=4SV=1	tr|A0A553SM66|A0A553SM66_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21985PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	614.3855590820312	2	614.387188	1226.75982	-4.8757	-0.0029956	1.5212	0.00093458	-3.3545	-0.002061	614.3879084256669	157.16	1.131	155.99	155.65	156.79	-1.1707					59	27	4	0	0	0	0.72473	1	13565	13565		19.104	2.3861	1	104880			60813	33807	50185	50230	66591	66591					0.15551378188183662
VLINQKYKG	9	Unmodified	_VLINQKYKG_					0	0	0			REV__JPH3|p.I414Mfs*29|1|0.31|ENSG00000154118|chr16:87684222-87684223|-/G|frameshift_variant	REV__JPH3|p.I414Mfs*29|1|0.31|ENSG00000154118|chr16:87684222-87684223|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	531.816162109375	2	531.818941	1061.62333	-6.4726	-0.0034422	2.2386	0.0011905	-4.234	-0.0022517	531.8202040929181	159.64	0.95506	158.31	157.96	158.91	-1.3316					28	18	3	0	0	0	0.6653	1	13819	13819		24.203	1.1603	1	50777	+		60814	20359	50186	50231	66592	66592					0.09498308748334239
VLIPEINLN	9	Unmodified	_VLIPEINLN_					0	0	0		ENSG00000101871|ENST00000317552|MID1;nc|ENSG00000101871|O15344-2|MID1	ENSG00000101871|ENST00000317552|MID1	ENSG00000101871|ENST00000317552|MID1	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.8046264648438	2	512.8055	1023.59645	3.2957	0.0016901	-3.2916	-0.0016879	0.0041479	2.1271E-06	512.8036235885786	131.04	1.1454	129.57	129.26	130.4	-1.4779					53	23	3	0	0	0	0.62352	1	12643	12643		29.15	0	1	241460			60815	2204	50187	50232	66593	66593					0.08559200137131029
VLIPKEDSLL	10	Unmodified	_VLIPKEDSLL_					0	0	0		ENSG00000266074|ENST00000675386|BAHCC1;nc|ENSG00000266074|Q9P281|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.8165893554688	2	563.839539	1125.66453	0.90364	0.00050951	-3.7791	-0.0021308	-2.8755	-0.0016213	563.8371881136717	62.862	0.77472	59.404	59.111	59.885	-3.4577					33	15	3	0	0	0	0.027088	1	4397	4397		26.693	1.2427	1	102530			60816	9526	50188	50233	66594	66594					0.10672024997143126
VLIPKEDSLL	10	Unmodified	_VLIPKEDSLL_					0	0	0		ENSG00000266074|ENST00000675386|BAHCC1;nc|ENSG00000266074|Q9P281|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	ENSG00000266074|ENST00000675386|BAHCC1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	563.839539	1125.66453	-1.2056	-0.00067979	-1.614	-0.00091006	-2.8197	-0.0015898	563.8384916405871	61.917	1.2659	59.157	58.464	59.73	-2.7593	-0.12336	0.0012705	NaN	34.173	50	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66057			60817	9526	50188	50233							0.10672024997143126
VLIPKLPQL	9	Unmodified	_VLIPKLPQL_					0	0	0		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-MSMS	OvCa99_classI_Rep5	1	510.84490966796875	2	510.844428	1019.6743	1.7378	0.00088774	-0.45049	-0.00023013	1.2873	0.00065761	510.844151205605	125.22	2.5768	125.22	124.65	127.23	0					181	58	5	0	0	0	0.11171	5	14454	14432;14454;14478;14503;14553		94.006	22.629	1	21123000			60818	7264	50189	50234	66595;66596;66597;66598;66599	66596					0.1652525779318239
VLIPKLPQL	9	Unmodified	_VLIPKLPQL_					0	0	0		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-MSMS	OvCa9_classI_Rep2	2	510.84423828125	2	510.844428	1019.6743	0.099341	5.0748E-05	-0.6189	-0.00031616	-0.51956	-0.00026541	510.8440612216227	123.45	4.7392	123.21	122.74	127.48	-0.23193					211	95	5	0	0	0	0.027416	18	11980	11947;11955;11961;11968;11974;11980;11993;11999;12011;12023;12029;12035;12053;12059;12077;12084;12090;12115		138.24	43.982	1	2560200			60819	7264	50189	50234	66600;66601;66602;66603;66604;66605;66606;66607;66608;66609;66610;66611;66612;66613;66614;66615;66616;66617	66605					0.1652525779318239
VLIPKLPQL	9	Unmodified	_VLIPKLPQL_					0	0	0		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-MSMS	OvCa9_classI_Rep3	3	510.8442077636719	2	510.844428	1019.6743	1.4399	0.00073557	-1.9888	-0.001016	-0.54888	-0.00028039	510.84340100881786	124.3	4.2588	123.26	122.82	127.08	-1.0377					208	81	5	0	0	0	0.055688	19	9647	9605;9610;9616;9622;9629;9635;9641;9647;9653;9660;9672;9678;9684;9690;9696;9702;9708;9714;9727		115.46	33.572	1	3150800			60820	7264	50189	50234	66618;66619;66620;66621;66622;66623;66624;66625;66626;66627;66628;66629;66630;66631;66632;66633;66634;66635;66636	66625					0.1652525779318239
VLIPKLPQL	9	Unmodified	_VLIPKLPQL_					0	0	0		nc|ENSG00000172057|Q8N138-4|ORMDL3;ENSG00000172057|ENST00000304046|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	nc|ENSG00000172057|Q8N138-4|ORMDL3	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.84521484375	2	510.844428	1019.6743	-1.3602	-0.00069483	0.80064	0.000409	-0.55952	-0.00028583	510.84481256309454	124.63	4.041	123.24	122.82	126.86	-1.3908					202	79	5	0	0	0	0.055688	14	11838	11792;11802;11814;11826;11838;11850;11862;11874;11886;11898;11910;11935;11962;12085		115.46	52.153	1	3429700			60821	7264	50189	50234	66637;66638;66639;66640;66641;66642;66643;66644;66645;66646;66647;66648;66649;66650	66641					0.1652525779318239
VLIPPEAPPR	10	Unmodified	_VLIPPEAPPR_					0	0	0			REV__ENST00000478260.5_1_11:3109453-3111165:-|nuORF	REV__ENST00000478260.5_1_11:3109453-3111165:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	544.8248901367188	2	544.826766	1087.63898	-5.7876	-0.0031532	1.5349	0.00083624	-4.2527	-0.002317	544.8275981477423	155.03	0.91966	153.96	153.65	154.57	-1.073					57	22	4	0	0	0	0.79917	1	13322	13322		19.104	0.77911	1	91973	+		60822	26411	50190	50235	66651	66651					0.09866595265361866
VLIPPLRIL	9	Unmodified	_VLIPPLRIL_					0	0	0		ENSG00000174373|ENST00000680220|RALGAPA1;nc|ENSG00000174373|Q6GYQ0|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-7|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-5|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-6|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-2|RALGAPA1;nc|ENSG00000174373|Q6GYQ0-4|RALGAPA1;ENST00000443361.1_1_9:108285096-108287232:+|nuORF	ENSG00000174373|ENST00000680220|RALGAPA1	ENSG00000174373|ENST00000680220|RALGAPA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.359130859375	2	517.360245	1032.70594	1.8735	0.00096925	-2.5299	-0.0013089	-0.65645	-0.00033962	517.3588470360384	137.04	2.3917	135.5	135.08	137.47	-1.5437					132	51	5	0	0	0	0.50066	1	13372	13372		42.474	3.6683	1	756000			60823	7460	50191	50236	66652	66652					0.1908925054710835
VLIQKNLGPK	10	Unmodified	_VLIQKNLGPK_					0	0	0		ADD1-FAM193A|2|fusion;ADD1-FAM193A|1|fusion;ADD1-FAM193A|3|fusion;ADD1-FAM193A|4|fusion;ENST00000509039.5_1_4:2877642-2901297:+|nuORF;ENST00000503169.5_1_4:2877642-2906862:+|nuORF;nc|ENSG00000087274|P35611-5|ADD1;nc|ENSG00000087274|P35611-2|ADD1;nc|ENSG00000087274|P35611-6|ADD1;nc|ENSG00000087274|P35611-4|ADD1;nc|ENSG00000087274|P35611|ADD1;nc|ENSG00000087274|P35611-3|ADD1;ENST00000508684.5_1_4:2877642-2900342:+|nuORF;ENSG00000087274|ENST00000683351|ADD1;ENST00000506157.1_1_4:2889441-2900342:+|nuORF	ADD1-FAM193A|2|fusion	ADD1-FAM193A|2|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	555.3528442382812	2	555.355691	1108.69683	-4.1933	-0.0023288	0.44804	0.00024882	-3.7453	-0.00208	555.3557970844861	158.57	1.1439	158.34	158.06	159.2	-0.22696					59	23	4	0	0	0	0.7759	1	16132	16132		21.96	1.013	1	239990			60824	37	50192	50237	66653	66653					0.14682857190791765
VLIRCSNSK	9	Unmodified	_VLIRCSNSK_					0	0	0			REV__nc|ENSG00000136153|Q8WWI1-4|LMO7	REV__nc|ENSG00000136153|Q8WWI1-4|LMO7	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.3202819824219	2	510.286951	1018.55935	-0.40031	-0.00020427	-2.92	-0.00149	-3.3203	-0.0016943	510.2853073905763	53.931	0.94525	53.931	53.347	54.293	0					34	22	2	0	0	0	0.027462	1	4308	4308		31.53	0	1	190870	+		60825	28872	50193	50238	66654	66654					0.050812053197319074
VLIRMDYQLH	10	Unmodified	_VLIRMDYQLH_					0	0	0		ENSG00000187612|ENST00000344514|OR5W2	ENSG00000187612|ENST00000344514|OR5W2	ENSG00000187612|ENST00000344514|OR5W2	MULTI-MSMS	OvCa9_classI_Rep2	2	645.347900390625	2	644.34754	1286.68053	-5.9103	-0.0038083	-3.2142	-0.0020711	-9.1245	-0.0058794	644.3481939078952	161.98	1.0774	161.75	161.23	162.31	-0.22696					70	20	6	0	0	0	0.71192	1	16487	16487		29.15	7.1897	1	104250			60826	8420	50194	50239	66655	66655					0.04865407962392965
VLISFPPVF	9	Unmodified	_VLISFPPVF_					0	0	0		ENST00000216468.7_1_14:77805123-77805273:-|nuORF	ENST00000216468.7_1_14:77805123-77805273:-|nuORF	ENST00000216468.7_1_14:77805123-77805273:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	509.8034362792969	2	509.802229	1017.5899	-1.31	-0.00066782	4.1509	0.0021161	2.841	0.0014483	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.57242	1	11234	11234		35.201	4.6971	1	99460			60827	9678	50195	50240	66656	66656					0.08181306976428004
VLISIPINL	9	Unmodified	_VLISIPINL_					0	0	0			REV__tr|A0A7D7A1R1|A0A7D7A1R1_9CLOTDUF4013domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05345PE=4SV=1	REV__tr|A0A7D7A1R1|A0A7D7A1R1_9CLOTDUF4013domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05345PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	491.3208312988281	2	491.320786	980.627018	0.027599	1.356E-05	-3.0796	-0.0015131	-3.052	-0.0014995	491.3191338566146	57.713	1.2126	57.713	57.522	58.734	0					64	28	3	0	0	0	0.21231	1	4867	4867		74.255	5.4682	1	1637400	+		60828	32508	50196	50241	66657	66657					0.1359297852217196
VLITSLIYY	9	Unmodified	_VLITSLIYY_					0	0	0		tr|A0A7D6VRV7|A0A7D6VRV7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08505PE=4SV=1	tr|A0A7D6VRV7|A0A7D6VRV7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08505PE=4SV=1	tr|A0A7D6VRV7|A0A7D6VRV7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08505PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.2745971679688	2	542.818076	1083.6216	-0.32079	-0.00017413	-2.3523	-0.0012769	-2.6731	-0.001451	542.8167341104217	40.8	0.30885	40.8	40.573	40.881	0					8	6	2	0	0	0	0.027462	1	2497	2497		18.324	0	1	35636			60829	34958	50197	50242	66658	66658					0.08313254939707804
VLITSPINI	9	Unmodified	_VLITSPINI_					0	0	0			REV__tr|A0A7D6ZZT9|A0A7D6ZZT9_9CLOTIg-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07480PE=4SV=1	REV__tr|A0A7D6ZZT9|A0A7D6ZZT9_9CLOTIg-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07480PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	484.318359375	2	485.302593	968.590633	0.25706	0.00012475	-0.56654	-0.00027494	-0.30947	-0.00015019	485.302170520324	114.01	0.98709	113.89	113.47	114.45	-0.11777					36	19	3	0	0	0	0.027462	1	10897	10897		29.15	0	1	27797	+		60830	32422	50198	50243	66659	66659					0.10508101625453037
VLITSPINI	9	Unmodified	_VLITSPINI_					0	0	0			REV__tr|A0A7D6ZZT9|A0A7D6ZZT9_9CLOTIg-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07480PE=4SV=1	REV__tr|A0A7D6ZZT9|A0A7D6ZZT9_9CLOTIg-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07480PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	485.302593	968.590633	-0.54887	-0.00026637	0.36036	0.00017488	-0.18852	-9.1487E-05	485.3025225819054	114.71	0.98726	113.65	113.3	114.29	-1.055	-0.096922	0.00068849	NaN	29.15	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31730	+		60831	32422	50198	50243							0.10508101625453037
VLITSPINI	9	Unmodified	_VLITSPINI_					0	0	0			REV__tr|A0A7D6ZZT9|A0A7D6ZZT9_9CLOTIg-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07480PE=4SV=1	REV__tr|A0A7D6ZZT9|A0A7D6ZZT9_9CLOTIg-likedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07480PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	485.302593	968.590633	0.43269	0.00020999	-0.56339	-0.00027341	-0.1307	-6.3427E-05	485.3020087843403	115.1	1.0119	113.7	113.3	114.32	-1.3977	-0.044682	-0.0002081	NaN	29.15	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37645	+		60832	32422	50198	50243							0.10508101625453037
VLIVLLCPE	9	Unmodified	_VLIVLLCPE_					0	0	0			REV__ENST00000317012.4_1_3:111313844-111314278:-|nuORF	REV__ENST00000317012.4_1_3:111313844-111314278:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.7644958496094	2	499.801371	997.58819	0.86947	0.00043456	-1.8961	-0.00094766	-1.0266	-0.0005131	499.8009979056583	127.21	0.62325	126.14	125.97	126.59	-1.0715					23	11	3	0	0	0	0.027408	1	9944	9944		68.485	0	1	31762	+		60833	24410	50199	50244	66660	66660					0.08929929896169142
VLIVYNFLLLY	11	Unmodified	_VLIVYNFLLLY_					0	0	0			REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	REV__nc|ENSG00000134160|Q7Z4N2-2|TRPM1	MULTI-SECPEP	OvCa9_classI_Rep2	2	456.7795104980469	3	457.275847	1368.80571	1.2715	0.00058142	-1.8322	-0.00083783	-0.56073	-0.00025641	457.2748273214179	80.244	0.39926	78.549	78.419	78.819	-1.6951					11	7	2	0	0	0	0.026079	1	6757	6757		25.126	11.618	1	65327	+		60834	19179	50200	50245	66661	66661					0.13606023370425646
VLIWGNDAEKL	11	Unmodified	_VLIWGNDAEKL_					0	0	0		ENST00000582293.1_1_17:56440599-56440737:-|nuORF;RNF43|p.R296Tfs*2|1|0.03|ENSG00000108375|chr17:58360215-58360216|-/T|frameshift_variant;nc|ENSG00000108375|Q68DV7-3|RNF43;RNF43|p.D671Vfs*29|1|0.04|ENSG00000108375|chr17:58357764-58357764|T/-|frameshift_variant;nc|ENSG00000108375|Q68DV7-2|RNF43;ENSG00000108375|ENST00000407977|RNF43;nc|ENSG00000108375|Q68DV7-4|RNF43	ENST00000582293.1_1_17:56440599-56440737:-|nuORF	ENST00000582293.1_1_17:56440599-56440737:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	628.8294067382812	2	629.34552	1256.67649	1.6493	0.001038	3.5624	0.002242	5.2116	0.0032799	629.3474763589837	130.71	0.57513	130.71	130.34	130.91	0					20	11	2	0	0	0	0.025656	1	15129	15129		26.063	6.9599	1	39361			60835	2650	50201	50246	66662	66662					0.05841641740335035
VLIYELEE	8	Unmodified	_VLIYELEE_					0	0	0		PRKAG2|p.Q337L|1|0.13|ENSG00000106617|chr7:151572705-151572705|T/A|missense_variant	PRKAG2|p.Q337L|1|0.13|ENSG00000106617|chr7:151572705-151572705|T/A|missense_variant	PRKAG2|p.Q337L|1|0.13|ENSG00000106617|chr7:151572705-151572705|T/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.80206298828125	2	504.268416	1006.52228	2.0333	0.0010253	-3.7804	-0.0019063	-1.7471	-0.00088102	504.266345022475	92.729	0.6666	92.729	92.555	93.221	0					19	15	2	0	0	0	0.028476	1	10050	10050		50.025	30.921	1	335810			60836	15522	50202	50247	66663	66663					0.01927812254939454
VLKALQSSA	9	Unmodified	_VLKALQSSA_					0	0	0		nc|ENSG00000176659|Q8N268|LINC02910	nc|ENSG00000176659|Q8N268|LINC02910	nc|ENSG00000176659|Q8N268|LINC02910	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.78790283203125	2	458.776742	915.538931	-2.06	-0.00094507	-2.8831	-0.0013227	-4.9431	-0.0022678	458.77551311511	148.19	0.19969	146.75	146.63	146.83	-1.435					5	3	2	0	0	0	0.027462	1	14583	14583		23.042	10.836	1	9365.9			60837	15191	50203	50248	66664	66664					0.07778357931556457
VLKAMGYTK	9	Unmodified	_VLKAMGYTK_					0	0	0		nc|ENSG00000103154|Q7Z6G3-2|NECAB2;ENSG00000103154|ENST00000305202|NECAB2	nc|ENSG00000103154|Q7Z6G3-2|NECAB2	nc|ENSG00000103154|Q7Z6G3-2|NECAB2	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.7911071777344	2	505.788795	1009.56304	0.089118	4.5075E-05	3.4114	0.0017254	3.5005	0.0017705	505.7903946746284	38.2	1.0399	35.274	35.007	36.047	-2.9264					41	20	3	0	0	0	0.53483	1	1474	1474		39.253	1.4413	1	120350			60838	2287	50204	50249	66665	66665					0.058638750935756434
VLKAMGYTK	9	Unmodified	_VLKAMGYTK_					0	0	0		nc|ENSG00000103154|Q7Z6G3-2|NECAB2;ENSG00000103154|ENST00000305202|NECAB2	nc|ENSG00000103154|Q7Z6G3-2|NECAB2	nc|ENSG00000103154|Q7Z6G3-2|NECAB2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	505.788795	1009.56304	-2.046	-0.0010348	5.7942	0.0029307	3.7482	0.0018958	505.79161027745613	38.154	0.79034	35.444	35.075	35.865	-2.7097	0.085271	0.0016873	NaN	39.253	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28827			60839	2287	50204	50249							0.058638750935756434
VLKANLSNT	9	Unmodified	_VLKANLSNT_					0	0	0		tr|A0A7D6VTY5|A0A7D6VTY5_9CLOTLPXTGcellwallanchordomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23330PE=3SV=1	tr|A0A7D6VTY5|A0A7D6VTY5_9CLOTLPXTGcellwallanchordomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23330PE=3SV=1	tr|A0A7D6VTY5|A0A7D6VTY5_9CLOTLPXTGcellwallanchordomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23330PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	480.2569274902344	2	480.279649	958.544745	2.4492	0.0011763	-0.86417	-0.00041504	1.585	0.00076125	480.2802094108172	84.272	0.42297	84.272	83.965	84.388	0					17	9	3	0	0	0	0.027462	1	8784	8784		42.396	6.7778	1	172030			60840	35151	50205	50250	66666	66666					0.06381456443239131
VLKANLSNT	9	Unmodified	_VLKANLSNT_					0	0	0		tr|A0A7D6VTY5|A0A7D6VTY5_9CLOTLPXTGcellwallanchordomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23330PE=3SV=1	tr|A0A7D6VTY5|A0A7D6VTY5_9CLOTLPXTGcellwallanchordomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23330PE=3SV=1	tr|A0A7D6VTY5|A0A7D6VTY5_9CLOTLPXTGcellwallanchordomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23330PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	480.279649	958.544745	0.27705	0.00013306	4.3522	0.0020903	4.6293	0.0022234	480.28189328472763	87.046	0.64437	84.419	84.054	84.698	-2.6269	0.073311	0.0018338	NaN	26.693	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30540			60841	35151	50205	50250							0.06381456443239131
VLKARVII	8	Unmodified	_VLKARVII_					0	0	0			REV__nc|ENSG00000162775|Q96T37-3|RBM15	REV__nc|ENSG00000162775|Q96T37-3|RBM15	MULTI-MSMS	OvCa99_classI_Rep5	1	456.3265686035156	2	456.323663	910.632772	0.20258	9.244E-05	0.67483	0.00030794	0.8774	0.00040038	456.3237910885909	73.602	0.77783	73.602	73.317	74.095	0					48	19	4	0	0	0	0.64377	1	7218	7218		54.765	2.4655	1	3921100	+		60842	28963	50206	50251	66667	66667					0.17388121824501468
VLKAWFPPL	9	Unmodified	_VLKAWFPPL_					0	0	0			REV__nc|ENSG00000125247|Q5T4D3-2|TMTC4	REV__nc|ENSG00000125247|Q5T4D3-2|TMTC4	MULTI-MSMS	OvCa99_classI_Rep5	1	535.8263549804688	2	535.823495	1069.63244	1.1807	0.00063265	-0.23583	-0.00012636	0.94488	0.00050629	535.823677598145	131.24	0.61343	131.24	131.01	131.62	0					30	12	3	0	0	0	0.53957	1	15239	15239		38.806	1.647	1	155670	+		60843	18715	50207	50252	66668	66668					0.10040702104652155
VLKCGPWTDL	10	Unmodified	_VLKCGPWTDL_					0	0	0		nc|ENSG00000118961|Q9H6V9-3|LDAH;ENSG00000118961|ENST00000237822|LDAH;nc|ENSG00000118961|Q9H6V9-2|LDAH	nc|ENSG00000118961|Q9H6V9-3|LDAH	nc|ENSG00000118961|Q9H6V9-3|LDAH	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.2989501953125	2	566.296985	1130.57942	0.10051	5.6916E-05	0.21597	0.00012231	0.31648	0.00017922	566.2967524823343	101.11	1.1121	98.846	98.394	99.506	-2.2665					60	22	3	0	0	0	0.42962	1	9093	9093		64.207	4.2765	1	1286000			60844	3333	50208	50253	66669	66669					0.019349562596744363
VLKEIVERV	9	Unmodified	_VLKEIVERV_					0	0	0		nc|ENSG00000135387|Q14444-2|CAPRIN1;ENSG00000135387|ENST00000341394|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	nc|ENSG00000135387|Q14444-2|CAPRIN1	MULTI-MSMS	OvCa99_classI_Rep5	1	542.8410034179688	2	542.839874	1083.66519	2.5539	0.0013863	-0.66019	-0.00035838	1.8937	0.001028	542.8394292389945	75.212	1.2788	75.212	74.92	76.199	0					54	31	4	0	0	0	0.17606	1	7468	7468		80.455	0.74203	1	3856500			60845	4372	50209	50254	66670	66670					0.12670864436836382
VLKERDFY	8	Unmodified	_VLKERDFY_					0	0	0		L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|32|1|sense	L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|32|1|sense	L1MA1_dup2764|chrX:115931094-115936482:-|2.805996385563428|0.2242833538996142|3.65|427.0|32|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.2506103515625	2	535.287474	1068.5604	-1.8909	-0.0010122	1.6797	0.00089914	-0.21118	-0.00011304	535.2876644466735	120.5	0.72983	119.15	118.72	119.45	-1.3444					25	13	3	0	0	0	0.028476	1	11361	11361		28.254	6.2944	1	22318			60846	14567	50210	50255	66671	66671					0.028857429602794582
VLKFLFVY	8	Unmodified	_VLKFLFVY_					0	0	0		nc|ENSG00000167723|Q8NET8-3|TRPV3;ENSG00000167723|ENST00000576742|TRPV3;nc|ENSG00000167723|Q8NET8-2|TRPV3	nc|ENSG00000167723|Q8NET8-3|TRPV3	nc|ENSG00000167723|Q8NET8-3|TRPV3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.8121337890625	2	514.812596	1027.61064	-0.03296	-1.6968E-05	4.1398	0.0021312	4.1068	0.0021142	514.8135696626656	56.952	1.319	53.607	52.87	54.189	-3.3449					38	25	2	0	0	0	0.028476	1	3689	3689		26.796	0	1	33665			60847	6838	50211	50256	66672	66672					0.09793897356098569
VLKGGESIHI	10	Unmodified	_VLKGGESIHI_					0	0	0			REV__nc|ENSG00000103888|Q8WUJ3-2|CEMIP	REV__nc|ENSG00000103888|Q8WUJ3-2|CEMIP	MULTI-MSMS	OvCa99_classI_Rep5	1	526.80908203125	2	526.808574	1051.60259	0.33046	0.00017409	-2.2	-0.001159	-1.8696	-0.00098491	526.8075062539502	160.94	1.1563	160.94	160.35	161.51	0					55	22	3	0	0	0	0.67931	1	18878	18878		32.812	2.3088	1	140160	+		60848	17635	50212	50257	66673	66673					0.07885718368675043
VLKGGPKLI	9	Unmodified	_VLKGGPKLI_					0	0	0			REV__tr|A0A7D6ZE77|A0A7D6ZE77_9CLOTMethyltransferasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12595PE=4SV=1	REV__tr|A0A7D6ZE77|A0A7D6ZE77_9CLOTMethyltransferasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12595PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.8150939941406	2	462.81567	923.616788	-1.3705	-0.00063427	1.6365	0.00075741	0.26607	0.00012314	462.8162525867665	124.35	1.1392	122.96	122.72	123.86	-1.3908					41	21	3	0	0	0	0.61208	1	11812	11812		30.504	1.3541	1	70673	+		60849	31940	50213	50258	66674	66674					0.15192415587614505
VLKGHRLYN	9	Unmodified	_VLKGHRLYN_					0	0	0			REV__ENST00000570005.5_1_16:2732549-2747193:+|nuORF	REV__ENST00000570005.5_1_16:2732549-2747193:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.3417358398438	2	550.322183	1098.62981	-1.0681	-0.00058781	-0.015413	-8.4823E-06	-1.0835	-0.00059629	550.3220709996989	99.931	1.2802	97.606	96.951	98.231	-2.3253					50	24	3	0	0	0	0.027462	1	8904	8904		55.504	3.205	1	84591	+		60850	21326	50214	50259	66675	66675					0.08444246699673386
VLKGNLIV	8	Unmodified	_VLKGNLIV_					0	0	0			REV__tr|A0A553SMQ6|A0A553SMQ6_NIACI(2Fe-2S)-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_23070PE=4SV=1	REV__tr|A0A553SMQ6|A0A553SMQ6_NIACI(2Fe-2S)-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_23070PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	428.28863525390625	2	428.286746	854.558939	2.3152	0.00099156	0.17192	7.363E-05	2.4871	0.0010652	428.28670621321993	102.88	0.71461	102.88	102.59	103.3	0					41	16	4	0	0	0	0.52992	1	11473	11473		74.517	8.6191	1	3068000	+		60851	30362	50215	50260	66676	66676					0.12584153662191966
VLKGNLIV	8	Unmodified	_VLKGNLIV_					0	0	0			REV__tr|A0A553SMQ6|A0A553SMQ6_NIACI(2Fe-2S)-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_23070PE=4SV=1	REV__tr|A0A553SMQ6|A0A553SMQ6_NIACI(2Fe-2S)-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_23070PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	428.286376953125	2	428.286746	854.558939	-0.73284	-0.00031386	0.96879	0.00041492	0.23595	0.00010106	428.2870129067913	105	1.3901	104.51	104.21	105.6	-0.48513					76	27	4	0	0	0	0.60486	1	9738	9738		62.978	8.2138	1	441820	+		60852	30362	50215	50260	66677	66677					0.12584153662191966
VLKGNLIV	8	Unmodified	_VLKGNLIV_					0	0	0			REV__tr|A0A553SMQ6|A0A553SMQ6_NIACI(2Fe-2S)-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_23070PE=4SV=1	REV__tr|A0A553SMQ6|A0A553SMQ6_NIACI(2Fe-2S)-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_23070PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	428.286746	854.558939	2.3152	0.00099156	0.17192	7.363E-05	2.4871	0.0010652	428.28670621321993	102.88	0.71461	102.88	102.59	103.3	0	0	0	NaN	74.517	41	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3068000	+		60853	30362	50215	50260							0.12584153662191966
VLKHFPVRFL	10	Unmodified	_VLKHFPVRFL_					0	0	0			REV__ENST00000382252.5_1_7:6694764-6695430:+|nuORF	REV__ENST00000382252.5_1_7:6694764-6695430:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	419.2603759765625	3	419.260642	1254.7601	3.419	0.0014335	-4.07	-0.0017064	-0.65104	-0.00027295	419.25878852351644	89.8	0.46091	89.8	89.6	90.06	0					21	10	3	0	0	0	0.5675	1	9607	9607		45.972	10.794	1	840840	+		60854	25213	50216	50261	66678	66678					0.14290842698710549
VLKHFPVRFL	10	Unmodified	_VLKHFPVRFL_					0	0	0			REV__ENST00000382252.5_1_7:6694764-6695430:+|nuORF	REV__ENST00000382252.5_1_7:6694764-6695430:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	419.260642	1254.7601	3.419	0.0014335	-4.07	-0.0017064	-0.65104	-0.00027295	419.25878852351644	89.8	0.46091	89.8	89.6	90.06	0	0	0	NaN	45.972	21	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	840840	+		60855	25213	50216	50261							0.14290842698710549
VLKIEKTTE	9	Unmodified	_VLKIEKTTE_					0	0	0			REV__nc|ENSG801|P63132|HERVK_113_pro	REV__nc|ENSG801|P63132|HERVK_113_pro	MULTI-MSMS	OvCa9_classI_Rep3	3	530.8165283203125	2	530.816064	1059.61758	0.30148	0.00016003	0.76221	0.00040459	1.0637	0.00056463	530.816354509631	72.1	2.7704	69.497	69.18	71.951	-2.6023					121	55	4	0	0	0	0.67104	1	3428	3428		23.523	0.48021	1	935120	+		60856	29228	50217	50262	66679	66679					0.09015165445975981
VLKISGLTY	9	Unmodified	_VLKISGLTY_					0	0	0		ENSG00000139985|ENST00000603540|ADAM21	ENSG00000139985|ENST00000603540|ADAM21	ENSG00000139985|ENST00000603540|ADAM21	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.3022155761719	2	497.302593	992.590633	2.82	0.0014024	-3.3796	-0.0016807	-0.55966	-0.00027832	497.3007748176588	130.65	1.3336	129.17	128.91	130.24	-1.478					47	27	3	0	0	0	0.55588	1	12544	12544		37.159	2.9866	1	51596			60857	4816	50218	50263	66680	66680					0.0940410162546641
VLKISGLTY	9	Unmodified	_VLKISGLTY_					0	0	0		ENSG00000139985|ENST00000603540|ADAM21	ENSG00000139985|ENST00000603540|ADAM21	ENSG00000139985|ENST00000603540|ADAM21	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	497.302593	992.590633	0.2	9.9459E-05	-0.090354	-4.4933E-05	0.10964	5.4525E-05	497.30242744427414	130.35	0.84021	129.24	128.98	129.82	-1.1121	0.035284	0.0014763	NaN	37.159	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31795			60858	4816	50218	50263							0.0940410162546641
VLKKATLKV	9	Unmodified	_VLKKATLKV_					0	0	0		nc|ENSG00000117676|Q15418-4|RPS6KA1;nc|ENSG00000117676|Q15418-2|RPS6KA1;ENSG00000117676|ENST00000374168|RPS6KA1;ENST00000524436.5_1_1:26856411-26877988:+|nuORF;ENST00000530607.1_1_1:26872355-26877988:+|nuORF;RPS6KA3|p.H412Sfs*9|1|0.09|ENSG00000177189|chrX:20172865-20172866|-/A|frameshift_variant;RPS6KA3|p.R458Lfs*33|1|0.06|ENSG00000177189|chrX:20169473-20169474|-/GCTGCGCTGGCTGGAGTGCAGTGGTGCGATAA|frameshift_variant;RPS6KA3|p.V489Gfs*13|1|0.09|ENSG00000177189|chrX:20167725-20167726|-/AAAAATAAGCCAGGCACGGTGGTGTTCTC|frameshift_variant;nc|ENSG00000117676|Q15418-3|RPS6KA1;ENSG00000177189|ENST00000379565|RPS6KA3;nc|ENSG00000071242|Q15349-3|RPS6KA2;ENSG00000071242|ENST00000265678|RPS6KA2;ENST00000527264.5_1_1:26873736-26880810:+|nuORF;nc|ENSG00000071242|Q15349-2|RPS6KA2	nc|ENSG00000117676|Q15418-4|RPS6KA1	nc|ENSG00000117676|Q15418-4|RPS6KA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.7185363769531	2	500.349877	998.685202	-0.47976	-0.00024005	0.24947	0.00012482	-0.23029	-0.00011523	500.3498218980684	40.524	0.54129	40.524	40.34	40.881	0					30	11	4	0	0	0	0.027462	1	2468	2468		51.335	34.862	1	397860			60859	3272	50219	50264	66681	66681					0.18580660167458518
VLKKGEHQI	9	Unmodified	_VLKKGEHQI_					0	0	0		DTX3L|p.L492Dfs*33|1|0.16|ENSG00000163840|chr3:122569562-122569563|TT/-|frameshift_variant;nc|ENSG00000163840|Q8TDB6-2|DTX3L;DTX3L|p.D473Efs*3|1|0.03|ENSG00000163840|chr3:122569507-122569508|-/G|frameshift_variant;ENSG00000163840|ENST00000296161|DTX3L	DTX3L|p.L492Dfs*33|1|0.16|ENSG00000163840|chr3:122569562-122569563|TT/-|frameshift_variant	DTX3L|p.L492Dfs*33|1|0.16|ENSG00000163840|chr3:122569562-122569563|TT/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	526.3163452148438	2	526.316566	1050.61858	-0.63341	-0.00033337	0.14307	7.5301E-05	-0.49034	-0.00025807	526.3164974648266	29.511	0.5982	29.511	29.337	29.935	0					24	11	4	0	0	0	0.12515	1	1055	1055		90.37	33.649	1	486130			60860	763	50220	50265	66682	66682					0.09529424605557324
VLKKPNISMKI	11	Unmodified	_VLKKPNISMKI_					0	0	0			REV__ENSG00000117151|ENST00000370630|CTBS	REV__ENSG00000117151|ENST00000370630|CTBS	MULTI-MSMS	OvCa9_classI_Rep3	3	424.60406494140625	3	424.268698	1269.78426	2.1849	0.00092699	0.81372	0.00034523	2.9986	0.0012722	424.26901414012116	62.593	1.0533	59.559	59.313	60.366	-3.0339					48	20	4	0	0	0	0.72483	1	2290	2290		17.833	2.5	1	93226	+		60861	18340	50221	50266	66683	66683					0.1601631507003276
VLKKSSIGK	9	Unmodified	_VLKKSSIGK_					0	0	0			REV__ENSG00000134757|ENST00000257189|DSG3	REV__ENSG00000134757|ENST00000257189|DSG3	MULTI-MSMS	OvCa9_classI_Rep3	3	480.3177185058594	2	480.316035	958.617516	0.28938	0.000139	3.8552	0.0018517	4.1446	0.0019907	480.317700980333	131.71	1.0449	130.58	130.29	131.34	-1.1249					43	20	3	0	0	0	0.50149	1	10517	10517		42.396	1.8235	1	66984	+		60862	19227	50222	50267	66684	66684					0.13655210236652238
VLKKTCKKK	9	Unmodified	_VLKKTCKKK_					0	0	0		ENSG00000154144|ENST00000441174|TBRG1	ENSG00000154144|ENST00000441174|TBRG1	ENSG00000154144|ENST00000441174|TBRG1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.8535766601562	2	538.354637	1074.69472	-0.89282	-0.00048066	1.6562	0.00089161	0.76335	0.00041095	538.3553426066112	27.032	0.39942	27.032	26.792	27.191	0					9	7	2	0	0	0	0.027462	1	767	767		3.9852	0	1	39303			60863	5715	50223	50268	66685	66685					0.16036105181342464
VLKLLLLAL	9	Unmodified	_VLKLLLLAL_					0	0	0			REV__nc|ENSG00000133731|P29218-2|IMPA1	REV__nc|ENSG00000133731|P29218-2|IMPA1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.33428955078125	2	498.364996	994.715439	-0.91302	-0.00045502	4.0791	0.0020329	3.1661	0.0015779	498.3671067033897	124.27	0.30032	122.88	122.62	122.92	-1.3908					6	5	2	0	0	0	0.027462	1	11772	11772		30.504	11.144	1	8385.4	+		60864	28858	50224	50269	66686	66686					0.21787018832628746
VLKLRPLRRR	10	Unmodified	_VLKLRPLRRR_					0	0	0			REV__ENST00000557989.1_1_15:30115015-30115315:+|nuORF	REV__ENST00000557989.1_1_15:30115015-30115315:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	436.2606201171875	3	436.301724	1305.88334	-0.25943	-0.00011319	-4.2072	-0.0018356	-4.4666	-0.0019488	436.6351147903733	63.985	0.20866	61.26	61.181	61.389	-2.7245					5	3	2	0	0	0	0.027117	1	4863	4863		21.686	8.7283	1	15113	+		60865	27582	50225	50270	66687	66687					0.24263518869815925
VLKMIPAP	8	Unmodified	_VLKMIPAP_					0	0	0			REV__tr|A0A7D6VUF8|A0A7D6VUF8_9CLOT3-hydroxybutyryl-CoAdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20375PE=4SV=1	REV__tr|A0A7D6VUF8|A0A7D6VUF8_9CLOT3-hydroxybutyryl-CoAdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20375PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	434.7695007324219	2	434.769874	867.525196	1.2559	0.00054602	3.0597	0.0013303	4.3155	0.0018763	434.7711959531507	41.911	2.4713	39.201	38.881	41.353	-2.7097					118	49	4	0	0	0	0.7043	1	2285	2285		42.474	3.453	1	2230100	+		60866	31674	50226	50271	66688	66688					0.0861340889875919
VLKNHLSWV	9	Unmodified	_VLKNHLSWV_					0	0	0		tr|A0A553SR98|A0A553SR98_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00710PE=3SV=1	tr|A0A553SR98|A0A553SR98_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00710PE=3SV=1	tr|A0A553SR98|A0A553SR98_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00710PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	548.3174438476562	2	548.319109	1094.62366	-0.84164	-0.00046149	-3.3806	-0.0018536	-4.2222	-0.0023151	548.3171569301378	74.411	2.3795	72	71.151	73.531	-2.4106					140	47	5	0	0	0	0.55588	1	3691	3691		37.159	2.9866	1	1829400			60867	34238	50227	50272	66689	66689					0.08013728468154113
VLKNLTPQI	9	Unmodified	_VLKNLTPQI_					0	0	0		nc|ENSG00000090905|Q8NDV7-6|TNRC6A;nc|ENSG00000090905|Q8NDV7-5|TNRC6A;ENSG00000090905|ENST00000395799|TNRC6A;nc|ENSG00000090905|Q8NDV7-2|TNRC6A;ENST00000464539.1_1_16:24833345-24835125:+|nuORF	nc|ENSG00000090905|Q8NDV7-6|TNRC6A	nc|ENSG00000090905|Q8NDV7-6|TNRC6A	MULTI-MSMS	OvCa99_classI_Rep5	1	513.82568359375	2	513.321317	1024.62808	0.41765	0.00021439	3.9198	0.0020121	4.3375	0.0022265	513.3230597969497	161.37	0.55679	161.37	161.16	161.72	0					16	10	2	0	0	0	0.59259	1	18922	18922		32.812	0.85756	1	44114			60868	1851	50228	50273	66690	66690					0.11675192891084407
VLKNLVSSI	9	Unmodified	_VLKNLVSSI_					0	0	0			REV__ENST00000494536.5_1_2:64083453-64109797:+|nuORF	REV__ENST00000494536.5_1_2:64083453-64109797:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	486.8091735839844	2	486.808042	971.601532	-0.8997	-0.00043798	0.29766	0.00014491	-0.60204	-0.00029308	486.80812317351786	50.125	0.96187	50.125	49.813	50.775	0					45	21	4	0	0	0	0.24951	1	3781	3781		68.787	5.4806	1	1364400	+		60869	21482	50229	50274	66691	66691					0.11459503999742537
VLKNNYAAA	9	Unmodified	_VLKNNYAAA_					0	0	0			REV__ENSG00000148602|ENST00000372105|LRIT1	REV__ENSG00000148602|ENST00000372105|LRIT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.248291015625	2	482.266542	962.51853	-0.94794	-0.00045716	0.90181	0.00043491	-0.046137	-2.225E-05	482.2667062027585	65.727	0.71393	65.727	65.231	65.945	0					23	17	2	0	0	0	0.027462	1	6055	6055		55.504	0	1	599850	+		60870	20117	50230	50275	66692	66692					0.03577187271730509
VLKNREVIL	9	Unmodified	_VLKNREVIL_					0	0	0		ENST00000367106.1_1_1:206809561-206811012:+|nuORF;ENST00000367108.7_1_1:206809048-206811012:+|nuORF	ENST00000367106.1_1_1:206809561-206811012:+|nuORF	ENST00000367106.1_1_1:206809561-206811012:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	542.3477172851562	2	542.347866	1082.68118	-0.95939	-0.00052032	0.8125	0.00044066	-0.14689	-7.9663E-05	542.3481198723362	58.668	1.9518	55.888	55.487	57.438	-2.7801					90	37	4	0	0	0	0.29717	1	4255	4255		63.306	2.3343	1	339760			60871	10834	50231	50276	66693	66693					0.14314570673764138
VLKPLFVI	8	Unmodified	_VLKPLFVI_					0	0	0			REV__ENSG00000196208|ENST00000381486|GREB1	REV__ENSG00000196208|ENST00000381486|GREB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.7469177246094	2	464.815139	927.615725	-0.4126	-0.00019178	-4.1504	-0.0019292	-4.563	-0.002121	464.813138351757	54.957	0.43196	54.957	54.761	55.193	0					12	9	2	0	0	0	0.028476	1	4468	4468		52.299	5.5327	1	188850	+		60872	22799	50232	50277	66694	66694					0.14902201218706068
VLKPMQPK	8	Unmodified	_VLKPMQPK_					0	0	0		ZDBF2|p.G2318Rfs*12|1|0.09|ENSG00000204186|chr2:206311479-206311480|-/AGAGCTGTGGATATAAT|frameshift_variant;ENSG00000204186|ENST00000374423|ZDBF2	ZDBF2|p.G2318Rfs*12|1|0.09|ENSG00000204186|chr2:206311479-206311480|-/AGAGCTGTGGATATAAT|frameshift_variant	ZDBF2|p.G2318Rfs*12|1|0.09|ENSG00000204186|chr2:206311479-206311480|-/AGAGCTGTGGATATAAT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.7879943847656	2	470.786056	939.557558	-0.18553	-8.7345E-05	2.9418	0.001385	2.7563	0.0012976	470.78744487463723	40.717	3.4773	37.763	37.112	40.589	-2.9541					147	66	5	0	0	0	0.74679	1	1876	1876		28.254	3.7351	1	6500500			60873	8955	50233	50278	66695	66695					0.0853619630177036
VLKPPRSEE	9	Unmodified	_VLKPPRSEE_					0	0	0			REV__ENSG00000055609|ENST00000262189|KMT2C	REV__ENSG00000055609|ENST00000262189|KMT2C	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.3207397460938	2	527.798206	1053.58186	-0.5295	-0.00027947	-0.38972	-0.00020569	-0.91922	-0.00048516	527.797619170757	56.65	0.50764	53.356	53.12	53.628	-3.2944					12	9	2	0	0	0	0.027441	1	3663	3663		40.778	0	1	19834	+		60874	16712	50234	50279	66696	66696					0.05721127988999797
VLKQKCLLT	9	Unmodified	_VLKQKCLLT_					0	0	0		nc|ENSG00000115109|Q9HCM4-3|EPB41L5;ENSG00000115109|ENST00000263713|EPB41L5	nc|ENSG00000115109|Q9HCM4-3|EPB41L5	nc|ENSG00000115109|Q9HCM4-3|EPB41L5	MULTI-MSMS	OvCa9_classI_Rep2	2	523.32421875	2	523.325545	1044.63654	0.90245	0.00047227	-4.2674	-0.0022332	-3.3649	-0.001761	523.3231203427081	131.19	1.3271	130.96	130.65	131.98	-0.22696					57	26	3	0	0	0	0.46377	1	12922	12922		45.952	0	1	194020			60875	3062	50235	50280	66697	66697					0.11600423536060589
VLKQKMVIL	9	Unmodified	_VLKQKMVIL_					0	0	0		nc|ENSG00000009790|Q9Y228-3|TRAF3IP3;nc|ENSG00000009790|Q9Y228-2|TRAF3IP3;ENSG00000009790|ENST00000367025|TRAF3IP3	nc|ENSG00000009790|Q9Y228-3|TRAF3IP3	nc|ENSG00000009790|Q9Y228-3|TRAF3IP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3294067382812	2	536.351563	1070.68857	-0.96463	-0.00051738	1.8835	0.0010102	0.91884	0.00049282	536.3526696447652	34.281	0.23555	34.281	34.209	34.444	0					10	4	3	0	0	0	0.027462	1	1654	1654		24.203	3.7209	1	56476			60876	932	50236	50281	66698	66698					0.15605586949823191
VLKQRTVIE	9	Unmodified	_VLKQRTVIE_					0	0	0		ENST00000371394.6_1_9:140611085-140686569:+|nuORF;nc|ENSG00000181090|Q9H9B1-3|EHMT1;ENSG00000181090|ENST00000460843|EHMT1;nc|ENSG00000181090|Q9H9B1-4|EHMT1	ENST00000371394.6_1_9:140611085-140686569:+|nuORF	ENST00000371394.6_1_9:140611085-140686569:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	544.2841186523438	2	543.337498	1084.66044	0.50091	0.00027216	3.2577	0.00177	3.7586	0.0020422	543.3392121744766	127.35	0.64357	127.12	126.89	127.53	-0.2359					19	12	2	0	0	0	0.027462	1	12427	12427		30.504	8.5438	1	25276			60877	7919	50237	50282	66699	66699					0.12149980294088891
VLKRVHSVI	9	Unmodified	_VLKRVHSVI_					0	0	0			REV__GMIP|p.S830Rfs*8|1|0.07|ENSG00000089639|chr19:19630519-19630520|CA/-|frameshift_variant	REV__GMIP|p.S830Rfs*8|1|0.07|ENSG00000089639|chr19:19630519-19630520|CA/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	525.7962646484375	2	525.842751	1049.67095	-1.6179	-0.00085079	-0.3083	-0.00016212	-1.9263	-0.0010129	525.8428046085327	85.681	0.60143	83.461	83.084	83.686	-2.2204					19	11	2	0	0	0	0.027462	1	5050	5050		37.159	7.3176	1	33003	+		60878	17210	50238	50283	66700	66700					0.1481000773917458
VLKTVKGG	8	Unmodified	_VLKTVKGG_					0	0	0		ENSG00000111331|ENST00000228928|OAS3;OAS3|p.R188Pfs*10|1|0.05|ENSG00000111331|chr12:112944575-112944576|-/TCCTCAGCTATCAA|frameshift_variant	ENSG00000111331|ENST00000228928|OAS3	ENSG00000111331|ENST00000228928|OAS3	MULTI-MSMS	OvCa9_classI_Rep2	2	401.2620849609375	2	401.263271	800.511988	1.296	0.00052003	-4.2066	-0.001688	-2.9106	-0.0011679	401.26147123184654	136.26	1.7613	136.04	135.22	136.99	-0.22696					76	35	3	0	0	0	0.74394	1	13569	13569		13.775	0	1	533840			60879	2822	50239	50284	66701	66701					0.10375294111042876
VLKVGKSA	8	Unmodified	_VLKVGKSA_					0	0	0			REV__ACTN4|p.M373Tfs*31|1|0.33|ENSG00000130402|chr19:38717290-38717291|-/CT|frameshift_variant	REV__ACTN4|p.M373Tfs*31|1|0.33|ENSG00000130402|chr19:38717290-38717291|-/CT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	401.261962890625	2	401.263271	800.511988	1.296	0.00052003	-4.2066	-0.001688	-2.9106	-0.0011679	401.26147123184654	136.26	1.7613	136.04	135.22	136.99	-0.22696					76	35	3	0	0	0	0.74209	1	13498	13498		12.959	0	1	533840	+		60880	15559	50240	50285	66702	66702					0.10375294111042876
VLKVGWLFPL	10	Unmodified	_VLKVGWLFPL_					0	0	0		nc|ENSG00000138193|Q9P212-2|PLCE1	nc|ENSG00000138193|Q9P212-2|PLCE1	nc|ENSG00000138193|Q9P212-2|PLCE1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	586.3358764648438	2	586.365527	1170.7165	-0.79026	-0.00046338	-2.1952	-0.0012872	-2.9854	-0.0017506	586.3641457216861	121.51	0.6685	120.17	119.9	120.57	-1.3479					28	12	3	0	0	0	0.027117	1	11429	11429		30.504	2.6214	1	37337			60881	15043	50241	50286	66703	66703					0.137972332015579
VLKWSILSV	9	Unmodified	_VLKWSILSV_					0	0	0			REV__tr|A0A7D6VXA8|A0A7D6VXA8_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11140PE=4SV=1	REV__tr|A0A7D6VXA8|A0A7D6VXA8_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11140PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	522.8250732421875	2	522.826235	1043.63792	-0.61715	-0.00032266	-3.9689	-0.002075	-4.5861	-0.0023977	522.8241473129543	81.355	1.6752	79.033	78.337	80.012	-2.3226					150	32	6	0	0	0	0.22961	1	4514	4514		71.296	1.6681	1	2046900	+		60882	31773	50242	50287	66704	66704					0.11784380896460789
VLLAAPWLL	9	Unmodified	_VLLAAPWLL_					0	0	0		ENST00000549621.5_2_12:113623505-113623625:+|nuORF	ENST00000549621.5_2_12:113623505-113623625:+|nuORF	ENST00000549621.5_2_12:113623505-113623625:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3140869140625	2	498.318046	994.621539	0.13626	6.7901E-05	-4.3129	-0.0021492	-4.1766	-0.0020813	498.3155716071176	112.96	0.84042	111.52	111.16	112	-1.4461					41	16	3	0	0	0	0.53728	1	10451	10451		39.021	0	1	145370			60883	13577	50243	50288	66705	66705					0.12401299730356641
VLLAEKTSL	9	Unmodified	_VLLAEKTSL_					0	0	0			REV__ENSG00000137877|ENST00000320955|SPTBN5	REV__ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.2988586425781	2	487.30005	972.585547	0.38475	0.00018749	-3.5198	-0.0017152	-3.1351	-0.0015277	487.29815611355156	142.04	0.99402	140.58	140.34	141.33	-1.4627					35	18	3	0	0	0	0.5811	1	13905	13905		34.173	5.023	1	33451	+		60884	19493	50244	50289	66706	66706					0.09815797762848888
VLLAEKTSL	9	Unmodified	_VLLAEKTSL_					0	0	0			REV__ENSG00000137877|ENST00000320955|SPTBN5	REV__ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	487.30005	972.585547	-2.8457	-0.0013867	-0.31277	-0.00015241	-3.1584	-0.0015391	487.2998212597326	141.69	0.49651	140.68	140.54	141.03	-1.0106	0.051572	0.0026659	NaN	34.173	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7442.3	+		60885	19493	50244	50289							0.09815797762848888
VLLAEKTSL	9	Unmodified	_VLLAEKTSL_					0	0	0			REV__ENSG00000137877|ENST00000320955|SPTBN5	REV__ENSG00000137877|ENST00000320955|SPTBN5	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	487.30005	972.585547	0.38475	0.00018749	-3.5198	-0.0017152	-3.1351	-0.0015277	487.29815611355156	142.04	0.99402	140.58	140.34	141.33	-1.4627	-0.051572	-0.00045965	NaN	34.173	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33451	+		60886	19493	50244	50289							0.09815797762848888
VLLAFWCL	8	Unmodified	_VLLAFWCL_					0	0	0		ENST00000598636.1_1_19:47730148-47730220:-|nuORF	ENST00000598636.1_1_19:47730148-47730220:-|nuORF	ENST00000598636.1_1_19:47730148-47730220:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	482.2857971191406	2	482.769874	963.525196	-0.46835	-0.0002261	3.6757	0.0017745	3.2074	0.0015484	482.77132451952286	88.921	1.6374	86.79	86.265	87.902	-2.1309					55	32	3	0	0	0	0.028476	1	5495	5495		43.626	0	1	83151			60887	14197	50245	50290	66707	66707					0.041974088987672076
VLLAGPPGT	9	Unmodified	_VLLAGPPGT_					0	0	0		ENSG00000175792|ENST00000322623|RUVBL1;RUVBL1|p.I344Hfs*9|1|0.15|ENSG00000175792|chr3:128087794-128087795|AT/-|frameshift_variant;nc|ENSG00000175792|Q9Y265-2|RUVBL1	ENSG00000175792|ENST00000322623|RUVBL1	ENSG00000175792|ENST00000322623|RUVBL1	MULTI-MSMS	OvCa9_classI_Rep2	2	412.7457275390625	2	412.747453	823.480354	0.89602	0.00036983	-3.8761	-0.0015999	-2.9801	-0.00123	412.745727074971	134.3	1.3763	134.07	133.07	134.44	-0.22697					63	27	4	0	0	0	0.65476	1	13317	13317		25.45	0	1	259910			60888	7564	50246	50291	66708	66708					0.06155301357091503
VLLAGPPGT	9	Unmodified	_VLLAGPPGT_					0	0	0		ENSG00000175792|ENST00000322623|RUVBL1;RUVBL1|p.I344Hfs*9|1|0.15|ENSG00000175792|chr3:128087794-128087795|AT/-|frameshift_variant;nc|ENSG00000175792|Q9Y265-2|RUVBL1	ENSG00000175792|ENST00000322623|RUVBL1	ENSG00000175792|ENST00000322623|RUVBL1	MULTI-MSMS	OvCa9_classI_Rep3	3	412.7461242675781	2	412.747453	823.480354	-0.0041108	-1.6967E-06	-3.0137	-0.0012439	-3.0178	-0.0012456	412.74611275073886	135.39	1.6252	134.28	133.62	135.24	-1.1076					83	32	4	0	0	0	0.65476	1	10929	10929		25.45	0	1	589310			60889	7564	50246	50291	66709	66709					0.06155301357091503
VLLAHCMKRE	10	Unmodified	_VLLAHCMKRE_					0	0	0		ENSG00000150764|ENST00000440460|DIXDC1;nc|ENSG00000150764|Q155Q3-2|DIXDC1;ENST00000526500.5_1_11:111859671-111889757:+|nuORF	ENSG00000150764|ENST00000440460|DIXDC1	ENSG00000150764|ENST00000440460|DIXDC1	MULTI-MSMS	OvCa9_classI_Rep3	3	600.322998046875	2	600.323011	1198.63147	-2.9075	-0.0017454	3.7829	0.002271	0.87545	0.00052555	600.3251735089444	151.69	1.358	150.74	150.35	151.71	-0.95645					71	26	4	0	0	0	0.66721	1	12925	12925		34.173	3.6689	1	229880			60890	5518	50247	50292	66710	66710					0.04009796401805943
VLLAIELE	8	Unmodified	_VLLAIELE_					0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	MULTI-MSMS	OvCa99_classI_Rep5	1	450.2761535644531	2	450.276044	898.537535	1.2148	0.00054698	-2.9744	-0.0013393	-1.7596	-0.00079232	450.2746495413925	151.48	0.78206	151.48	151.15	151.93	0					30	15	3	0	0	0	0.74679	1	17721	17721		28.254	1.4582	1	291230	+		60891	22473	50248	50293	66711	66711					0.08420723842800726
VLLAIELE	8	Unmodified	_VLLAIELE_					0	0	0			REV__ENSG00000185038|ENST00000389758|MROH2A	REV__ENSG00000185038|ENST00000389758|MROH2A	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	450.276044	898.537535	1.2148	0.00054698	-2.9744	-0.0013393	-1.7596	-0.00079232	450.2746495413925	151.48	0.78206	151.48	151.15	151.93	0	0	0	NaN	28.254	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	291230	+		60892	22473	50248	50293							0.08420723842800726
VLLALADSH	9	Unmodified	_VLLALADSH_					0	0	0		ENSG00000141314|ENST00000269051|RHBDL3;nc|ENSG00000141314|P58872-3|RHBDL3	ENSG00000141314|ENST00000269051|RHBDL3	ENSG00000141314|ENST00000269051|RHBDL3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	470.7565002441406	2	469.768917	937.523281	0.58721	0.00027585	0.28082	0.00013192	0.86803	0.00040777	469.7685048914326	59.413	1.1922	56.021	55.35	56.542	-3.392					52	23	3	0	0	0	0.027449	1	4027	4027		40.573	0	1	175990			60893	4904	50249	50294	66712	66712					0.0520207141452147
VLLALELVAM	10	Unmodified	_VLLALELVAM_					0	0	0		ENST00000497700.1_1_15:44068610-44069126:-|nuORF	ENST00000497700.1_1_15:44068610-44069126:-|nuORF	ENST00000497700.1_1_15:44068610-44069126:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.7947387695312	2	536.327753	1070.64095	-1.7964	-0.00096346	4.4639	0.0023941	2.6675	0.0014307	536.3297638374421	41.908	1.859	38.928	38.336	40.195	-2.9804					57	35	3	0	0	0	0.027084	1	2039	2039		24.203	0	1	107150			60894	12815	50250	50295	66713	66713					0.10845887958953426
VLLALRLDGI	10	Unmodified	_VLLALRLDGI_					0	0	0		ENSG00000269556|ENST00000600449|TMEM185A	ENSG00000269556|ENST00000600449|TMEM185A	ENSG00000269556|ENST00000600449|TMEM185A	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.2267456054688	2	541.850242	1081.68593	1.5126	0.00081962	0.70241	0.0003806	2.215	0.0012002	541.85045029481	122.9	0.65086	122.9	122.72	123.37	0					23	13	2	0	0	0	0.026582	1	14213	14213		71.296	14.575	1	69406			60895	9542	50251	50296	66714	66714					0.14835454816511628
VLLAPRSPWR	10	Unmodified	_VLLAPRSPWR_					0	0	0		ENST00000373640.4_1_2:231911758-231911950:+|nuORF	ENST00000373640.4_1_2:231911758-231911950:+|nuORF	ENST00000373640.4_1_2:231911758-231911950:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8556518554688	2	597.858932	1193.70331	-2.7036	-0.0016164	-1.6559	-0.00099001	-4.3595	-0.0026064	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.75313	2	12656	12588;12656		24.519	0.31644	1	591030			60896	11012	50252	50297	66715;66716	66716					0.11420795142157658
VLLAPRSPWR	10	Unmodified	_VLLAPRSPWR_					0	0	0		ENST00000373640.4_1_2:231911758-231911950:+|nuORF	ENST00000373640.4_1_2:231911758-231911950:+|nuORF	ENST00000373640.4_1_2:231911758-231911950:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	597.8558349609375	2	597.858932	1193.70331	NaN	NaN	NaN	NaN	NaN	NaN	NaN	150.32	1	148.88	148.38	149.38	-1.4344								0	0	0	0.1401	1	14846	14846		23.523	1.8369	1				60897	11012	50252	50297	66717	66717					0.11420795142157658
VLLARPALL	9	Unmodified	_VLLARPALL_					0	0	0			REV__chr17:50187537-50188742|164|236.39|0.1|11.19|-|1|COL1A1,COL1A1|1	REV__chr17:50187537-50188742|164|236.39|0.1|11.19|-|1|COL1A1,COL1A1|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	483.3297424316406	2	483.328945	964.643337	2.4246	0.0011719	-2.8561	-0.0013804	-0.4315	-0.00020856	483.327447833265	136.12	0.97223	134.57	134.3	135.27	-1.5437					29	19	2	0	0	0	0.6653	1	13215	13215		24.203	0	1	31891	+		60898	15947	50253	50298	66718	66718					0.1596010447893832
VLLASTRFSL	10	Unmodified	_VLLASTRFSL_					0	0	0			REV__ENST00000480575.1_1_X:100603308-100603359:-|nuORF	REV__ENST00000480575.1_1_X:100603308-100603359:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	553.82958984375	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.53885	1	11922	11922		49.442	1.7842	1	308210	+		60899	26465	50254	50299	66719	66719					0.10094577919812764
VLLCFTKFLKA	11	Unmodified	_VLLCFTKFLKA_					0	0	0		ENSG00000145740|ENST00000396591|SLC30A5;nc|ENSG00000145740|Q8TAD4-3|SLC30A5	ENSG00000145740|ENST00000396591|SLC30A5	ENSG00000145740|ENST00000396591|SLC30A5	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8817749023438	2	641.883227	1281.7519	-5.3554	-0.0034376	4.3451	0.0027891	-1.0103	-0.00064849	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.69455	1	13217	13217		31.53	7.0106	1	804890			60900	5242	50255	50300	66720	66720					0.12229527667068396
VLLCVQLHVL	10	Unmodified	_VLLCVQLHVL_					0	0	0			REV__chr12:14789013-14790456|159|70.58|0.19|8.52|-|0|None,WBP11|1	REV__chr12:14789013-14790456|159|70.58|0.19|8.52|-|0|None,WBP11|1	MULTI-MSMS	OvCa9_classI_Rep3	3	568.8455200195312	2	568.846645	1135.67874	1.1361	0.00064626	-1.1496	-0.00065395	-0.013528	-7.6955E-06	568.845786397459	122.98	2.0826	121.95	121	123.08	-1.034					125	39	4	0	0	0	0.58282	1	9433	9433		44.117	3.3386	1	474050	+		60901	15874	50256	50301	66721	66721					0.11632398944425404
VLLCVQLHVL	10	Unmodified	_VLLCVQLHVL_					0	0	0			REV__chr12:14789013-14790456|159|70.58|0.19|8.52|-|0|None,WBP11|1	REV__chr12:14789013-14790456|159|70.58|0.19|8.52|-|0|None,WBP11|1	MULTI-SECPEP	OvCa9_classI_Rep3	3	568.8094482421875	2	568.846645	1135.67874	1.2401	0.00070541	-1.4137	-0.00080416	-0.17361	-9.8756E-05	568.8457117773926	124.98	3.4383	123.93	122.96	126.4	-1.0519					96	65	2	0	0	0	0.026982	1	9866	9866		30.504	1.3541	1	33042	+		60902	15874	50256	50301	66722	66722					0.11632398944425404
VLLDKIKNLQV	11	Unmodified	_VLLDKIKNLQV_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238252944-238263658:-|nuORF	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	641.9100952148438	2	641.908288	1281.80202	2.2382	0.0014367	-0.59119	-0.00037949	1.6471	0.0010573	641.9079108231467	102.15	2.7994	102.15	101.65	104.45	0					173	65	5	0	0	0	0.00012562	3	11368	11368;11392;11426		174.86	65.639	1	41720000			60903	6293	50257	50302	66723;66724;66725	66723					0.17239353596551155
VLLDLEPRVI	10	Unmodified	_VLLDLEPRVI_					0	0	0		ENST00000588870.1_1_17:40811874-40817754:+|nuORF;TUBG2|p.Q175Hfs*86|1|0.04|ENSG00000037042|chr17:42663421-42663422|-/CTTTAAAATATCCTTTATAACAAAT|frameshift_variant;ENST00000589613.1_1_17:40761741-40762767:+|nuORF;ENST00000588056.1_1_17:40761755-40764233:+|nuORF;ENSG00000131462|ENST00000251413|TUBG1;ENSG00000037042|ENST00000251412|TUBG2	ENST00000588870.1_1_17:40811874-40817754:+|nuORF	ENST00000588870.1_1_17:40811874-40817754:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8589477539062	2	583.860806	1165.70706	-6.9005	-0.0040289	3.2924	0.0019223	-3.608	-0.0021066	583.8626216517176	154.95	1.1831	153.88	153.56	154.74	-1.073					81	29	4	0	0	0	0.73378	1	13314	13314		26.693	2.1737	1	200380			60904	14079	50258	50303	66726	66726					0.1308342012534922
VLLDVQMPEMD	11	Oxidation (M)	_VLLDVQMPEM(Oxidation (M))D_		VLLDVQM(0.15)PEM(0.85)D		VLLDVQM(-7.5)PEM(7.5)D	0	0	1		tr|A0A7D7A3G4|A0A7D7A3G4_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_15715PE=4SV=1	tr|A0A7D7A3G4|A0A7D7A3G4_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_15715PE=4SV=1	tr|A0A7D7A3G4|A0A7D7A3G4_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_15715PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	435.87432861328125	3	435.873685	1304.59922	0.77097	0.00033605	0.13792	6.0115E-05	0.90889	0.00039616	435.8736197101725	111.8	1.2971	110.29	109.95	111.24	-1.5111					62	24	3	0	0	0	0.55686	1	10338	10338		48.602	16.567	2	362070			60905	36114	50259	50304	66727	66727		780			-0.04089080582548377
VLLDWINDV	9	Unmodified	_VLLDWINDV_					0	0	0		nc|ENSG00000188677|Q9HBI1-3|PARVB;ENSG00000188677|ENST00000338758|PARVB;nc|ENSG00000188677|Q9HBI1-2|PARVB;ENST00000402876.3_1_22:44420219-44515718:+|nuORF;PARVB|p.D251Ifs*6|1|0.16|ENSG00000188677|chr22:44147898-44147898|G/-|frameshift_variant	nc|ENSG00000188677|Q9HBI1-3|PARVB	nc|ENSG00000188677|Q9HBI1-3|PARVB	MULTI-MSMS	OvCa99_classI_Rep5	1	543.796630859375	2	543.795132	1085.57571	0.92111	0.0005009	0.76325	0.00041505	1.6844	0.00091595	543.7953451961573	156.88	1.1538	156.88	156.45	157.6	0					51	22	4	0	0	0	0.26076	1	18379	18379		67.494	0	1	170350			60906	8492	50260	50305	66728	66728					0.036346097574551095
VLLDYHLNYL	10	Unmodified	_VLLDYHLNYL_					0	0	0		nc|ENSG00000102081|Q06787-8|FMR1;nc|ENSG00000102081|Q06787-6|FMR1;nc|ENSG00000102081|Q06787-2|FMR1;nc|ENSG00000102081|Q06787-4|FMR1;nc|ENSG00000102081|Q06787-5|FMR1;nc|ENSG00000102081|Q06787-9|FMR1;nc|ENSG00000102081|Q06787-7|FMR1;nc|ENSG00000102081|Q06787-3|FMR1;ENSG00000102081|ENST00000370475|FMR1;nc|ENSG00000102081|Q06787-11|FMR1;nc|ENSG00000102081|Q06787-10|FMR1	nc|ENSG00000102081|Q06787-8|FMR1;nc|ENSG00000102081|Q06787-11|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	MULTI-MSMS	OvCa99_classI_Rep5	1	631.843505859375	2	631.842613	1261.67067	1.9632	0.0012404	0.28622	0.00018084	2.2494	0.0014213	631.8425437709003	127.13	1.1249	127.13	126.73	127.86	0					61	24	4	0	0	0	0.32926	1	14699	14699		77.318	15.21	1	1234800			60907	2221;14932	50261	50306	66729	66729					0.05030543228667739
VLLDYHLNYL	10	Unmodified	_VLLDYHLNYL_					0	0	0		nc|ENSG00000102081|Q06787-8|FMR1;nc|ENSG00000102081|Q06787-6|FMR1;nc|ENSG00000102081|Q06787-2|FMR1;nc|ENSG00000102081|Q06787-4|FMR1;nc|ENSG00000102081|Q06787-5|FMR1;nc|ENSG00000102081|Q06787-9|FMR1;nc|ENSG00000102081|Q06787-7|FMR1;nc|ENSG00000102081|Q06787-3|FMR1;ENSG00000102081|ENST00000370475|FMR1;nc|ENSG00000102081|Q06787-11|FMR1;nc|ENSG00000102081|Q06787-10|FMR1	nc|ENSG00000102081|Q06787-8|FMR1;nc|ENSG00000102081|Q06787-11|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	MULTI-MSMS	OvCa9_classI_Rep4_	4	631.8412475585938	2	631.842613	1261.67067	-1.1245	-0.00071052	1.0053	0.00063518	-0.11924	-7.5341E-05	631.8431300978218	127.18	1.1635	125.75	125.49	126.66	-1.4357					55	22	4	0	0	0	0.49558	2	12127	12127;12139		54.776	13.998	1	112280			60908	2221;14932	50261	50306	66730;66731	66730					0.05030543228667739
VLLDYHLNYL	10	Unmodified	_VLLDYHLNYL_					0	0	0		nc|ENSG00000102081|Q06787-8|FMR1;nc|ENSG00000102081|Q06787-6|FMR1;nc|ENSG00000102081|Q06787-2|FMR1;nc|ENSG00000102081|Q06787-4|FMR1;nc|ENSG00000102081|Q06787-5|FMR1;nc|ENSG00000102081|Q06787-9|FMR1;nc|ENSG00000102081|Q06787-7|FMR1;nc|ENSG00000102081|Q06787-3|FMR1;ENSG00000102081|ENST00000370475|FMR1;nc|ENSG00000102081|Q06787-11|FMR1;nc|ENSG00000102081|Q06787-10|FMR1	nc|ENSG00000102081|Q06787-8|FMR1;nc|ENSG00000102081|Q06787-11|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	631.842613	1261.67067	-0.081374	-5.1415E-05	0.00039241	2.4794E-07	-0.080981	-5.1168E-05	631.8425261096913	126.06	0.98593	125.82	125.5	126.49	-0.2359	0.019137	0.00027121	NaN	54.776	42	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73644			60909	2221;14932	50261	50306							0.05030543228667739
VLLDYHLNYL	10	Unmodified	_VLLDYHLNYL_					0	0	0		nc|ENSG00000102081|Q06787-8|FMR1;nc|ENSG00000102081|Q06787-6|FMR1;nc|ENSG00000102081|Q06787-2|FMR1;nc|ENSG00000102081|Q06787-4|FMR1;nc|ENSG00000102081|Q06787-5|FMR1;nc|ENSG00000102081|Q06787-9|FMR1;nc|ENSG00000102081|Q06787-7|FMR1;nc|ENSG00000102081|Q06787-3|FMR1;ENSG00000102081|ENST00000370475|FMR1;nc|ENSG00000102081|Q06787-11|FMR1;nc|ENSG00000102081|Q06787-10|FMR1	nc|ENSG00000102081|Q06787-8|FMR1;nc|ENSG00000102081|Q06787-11|FMR1	nc|ENSG00000102081|Q06787-11|FMR1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	631.842613	1261.67067	1.5857	0.0010019	-1.5647	-0.00098864	0.020998	1.3267E-05	631.8415717748688	126.91	1.3482	125.83	125.6	126.95	-1.0715	0.034334	-0.0017066	NaN	54.776	50	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	125720			60910	2221;14932	50261	50306							0.05030543228667739
VLLEELLPK	9	Unmodified	_VLLEELLPK_					0	0	0		ENST00000473527.5_1_7:100883089-100895220:-|nuORF;ENSG00000214253|ENST00000223136|FIS1	ENST00000473527.5_1_7:100883089-100895220:-|nuORF	ENST00000473527.5_1_7:100883089-100895220:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.2904052734375	2	527.33135	1052.64815	-1.8976	-0.0010007	2.1124	0.0011139	0.21479	0.00011326	527.3321736317665	118.91	1.0366	118.77	118.53	119.57	-0.14755					29	20	3	0	0	0	0.027462	1	11503	11503		40.573	11.423	1	23298			60911	9167	50262	50307	66732	66732					0.12392943831036973
VLLEHLSTI	9	Unmodified	_VLLEHLSTI_					0	0	0			REV__ENST00000526180.5_2_11:111782575-111782635:-|nuORF	REV__ENST00000526180.5_2_11:111782575-111782635:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	512.80517578125	2	512.8055	1023.59645	0.96769	0.00049623	-0.86044	-0.00044124	0.10725	5.4996E-05	512.8048988441653	129.99	1.0876	129.77	129.46	130.55	-0.22696					55	21	4	0	0	0	0.5811	1	12762	12762		34.173	5.023	1	154290	+		60912	27132	50263	50308	66733	66733					0.08559200137142398
VLLEINLPTF	10	Unmodified	_VLLEINLPTF_					0	0	0		tr|A0A7D6VPN3|A0A7D6VPN3_9CLOTAECfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17530PE=3SV=1	tr|A0A7D6VPN3|A0A7D6VPN3_9CLOTAECfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17530PE=3SV=1	tr|A0A7D6VPN3|A0A7D6VPN3_9CLOTAECfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17530PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	579.2674560546875	2	579.842082	1157.66961	0.48885	0.00028346	3.5042	0.0020319	3.993	0.0023153	579.8436747306115	67.973	1.2744	64.483	63.839	65.113	-3.4902					31	25	2	0	0	0	0.027056	1	4942	4942		27.882	11.409	1	55309			60913	34781	50264	50309	66734	66734					0.09708328859733228
VLLEINLPTF	10	Unmodified	_VLLEINLPTF_					0	0	0		tr|A0A7D6VPN3|A0A7D6VPN3_9CLOTAECfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17530PE=3SV=1	tr|A0A7D6VPN3|A0A7D6VPN3_9CLOTAECfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17530PE=3SV=1	tr|A0A7D6VPN3|A0A7D6VPN3_9CLOTAECfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17530PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	579.842082	1157.66961	-0.47494	-0.00027539	5.3688	0.003113	4.8939	0.0028377	579.8449813636402	66.949	0.69379	64.288	64	64.693	-2.661	-0.084926	-0.00071105	NaN	42.396	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32766			60914	34781	50264	50309							0.09708328859733228
VLLEINLPTF	10	Unmodified	_VLLEINLPTF_					0	0	0		tr|A0A7D6VPN3|A0A7D6VPN3_9CLOTAECfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17530PE=3SV=1	tr|A0A7D6VPN3|A0A7D6VPN3_9CLOTAECfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17530PE=3SV=1	tr|A0A7D6VPN3|A0A7D6VPN3_9CLOTAECfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_17530PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	579.842082	1157.66961	-0.046669	-2.7061E-05	6.1863	0.0035871	6.1396	0.00356	579.8454274333418	67.236	0.75291	64.348	64.137	64.889	-2.8873	-0.02487	0.00023701	NaN	42.396	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53954			60915	34781	50264	50309							0.09708328859733228
VLLELQQHL	9	Unmodified	_VLLELQQHL_					0	0	0		ENSG00000182158|ENST00000330387|CREB3L2	ENSG00000182158|ENST00000330387|CREB3L2	ENSG00000182158|ENST00000330387|CREB3L2	MULTI-MSMS	OvCa99_classI_Rep5	1	546.8270874023438	2	546.824224	1091.63389	-0.18858	-0.00010312	0.063478	3.4711E-05	-0.1251	-6.8409E-05	546.8242450150746	105.08	0.78726	105.08	104.83	105.62	0					27	17	2	0	0	0	0.045281	1	11785	11785		122.18	37.015	1	1205200			60916	7974	50265	50310	66735	66735					0.09174291402769086
VLLERKKF	8	Unmodified	_VLLERKKF_					0	0	0		ENSG00000183914|ENST00000572933|DNAH2;nc|ENSG00000183914|Q9P225-2|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	ENSG00000183914|ENST00000572933|DNAH2	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.8156127929688	2	516.831852	1031.64915	0.5161	0.00026674	-0.73279	-0.00037873	-0.21668	-0.00011199	516.8313058038922	114.7	0.93779	113.65	113.3	114.24	-1.055					44	18	3	0	0	0	0.028476	1	8528	8528		15.636	0.97212	1	76078			60917	8123	50266	50311	66736	66736					0.1345920299061163
VLLERLGIPTG	11	Unmodified	_VLLERLGIPTG_					0	0	0		tr|A0A553SI44|A0A553SI44_NIACISite-2proteasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_14160PE=3SV=1	tr|A0A553SI44|A0A553SI44_NIACISite-2proteasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_14160PE=3SV=1	tr|A0A553SI44|A0A553SI44_NIACISite-2proteasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_14160PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3566284179688	2	584.358431	1166.70231	-0.5033	-0.0002941	-2.654	-0.0015509	-3.1573	-0.001845	584.3567763295431	142.42	4.015	140.98	138.81	142.83	-1.4427					242	77	4	0	0	0	0.69455	1	13956	13956		31.53	1.2121	1	214670			60918	33341	50267	50312	66737	66737					0.12562535982578993
VLLERNSK	8	Unmodified	_VLLERNSK_					0	0	0			REV__NOD1|p.Q907Rfs*20|1|0.04|ENSG00000106100|chr7:30429444-30429444|G/-|frameshift_variant;REV__NOD1|p.F591Dfs*24|1|0.19|ENSG00000106100|chr7:30451646-30451647|-/TC|frameshift_variant	REV__NOD1|p.Q907Rfs*20|1|0.04|ENSG00000106100|chr7:30429444-30429444|G/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.63226318359375	2	479.787641	957.56073	-0.29832	-0.00014313	-0.099166	-4.7579E-05	-0.39749	-0.00019071	479.787436941091	29.511	0.39841	29.511	29.337	29.735	0					9	7	2	0	0	0	0.028476	1	1069	1069		37.159	0	1	66137	+		60919	17778;29257	50268	50313	66738	66738					0.08025162680144149
VLLFFFFF	8	Unmodified	_VLLFFFFF_					0	0	0		ENST00000318522.9_1_2:42557683-42557836:+|nuORF;ENST00000574285.2_1_16:9203969-9204164:+|nuORF;L1MA4A_dup2646|chr7:55461716-55462655:-|2.470314538974461|0.4304615177296836|2.52|429.0|47|1|anti-sense	ENST00000318522.9_1_2:42557683-42557836:+|nuORF	ENST00000318522.9_1_2:42557683-42557836:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	540.300048828125	2	540.301865	1078.58918	-0.5107	-0.00027593	-0.5496	-0.00029695	-1.0603	-0.00057288	540.3014676271473	29.128	0.49893	29.128	28.937	29.436	0					14	9	2	0	0	0	0.69862	1	1013	1013		43.626	0	1	435900			60920	10363	50269	50314	66739	66739					0.053025123273755526
VLLFIAMPL	9	Unmodified	_VLLFIAMPL_					0	0	0		tr|A0A553SQF3|A0A553SQF3_NIACIDUF3817domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07580PE=4SV=1	tr|A0A553SQF3|A0A553SQF3_NIACIDUF3817domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07580PE=4SV=1	tr|A0A553SQF3|A0A553SQF3_NIACIDUF3817domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07580PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.30230712890625	2	508.814282	1015.61401	0.22056	0.00011223	1.6902	0.00085998	1.9107	0.0009722	509.3175326823386	81.514	0.15233	79.865	79.767	79.919	-1.6485					4	2	2	0	0	0	0.02744	1	6917	6917		39.021	0	1	10841			60921	34152	50270	50315	66740	66740					0.10682824138450542
VLLFIAMPL	9	Unmodified	_VLLFIAMPL_					0	0	0		tr|A0A553SQF3|A0A553SQF3_NIACIDUF3817domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07580PE=4SV=1	tr|A0A553SQF3|A0A553SQF3_NIACIDUF3817domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07580PE=4SV=1	tr|A0A553SQF3|A0A553SQF3_NIACIDUF3817domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_07580PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.2854309082031	2	508.814282	1015.61401	-0.55151	-0.00028061	4.2257	0.0021501	3.6742	0.0018695	509.3188071364135	83.003	0.39003	80.32	80.222	80.612	-2.6829					9	7	2	0	0	0	0.027462	1	6907	6907		49.211	0	1	9386.8			60922	34152	50270	50315	66741	66741					0.10682824138450542
VLLFILFTE	9	Unmodified	_VLLFILFTE_					0	0	0			REV__ASAH2|p.M20R|1|0.05|ENSG00000188611|chr10:50248552-50248552|A/C|missense_variant	REV__ASAH2|p.M20R|1|0.05|ENSG00000188611|chr10:50248552-50248552|A/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	547.7969360351562	2	547.828443	1093.64233	-0.99073	-0.00054275	3.2605	0.0017862	2.2698	0.0012434	548.3317300884142	89.529	1.221	87.448	87.192	88.413	-2.0805					64	23	4	0	0	0	0.027462	1	5580	5580		12.959	0	1	136010	+		60923	15666	50271	50316	66742	66742					0.09925845319412474
VLLFLHLL	8	Unmodified	_VLLFLHLL_					0	0	0			REV__ENST00000593901.5_1_19:51140923-51142361:-|nuORF	REV__ENST00000593901.5_1_19:51140923-51142361:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	484.31866455078125	2	484.320589	966.626624	-0.15674	-7.5911E-05	-3.8603	-0.0018696	-4.017	-0.0019455	484.3185907532153	114.55	1.2339	114.43	114.16	115.39	-0.11777					49	24	3	0	0	0	0.69862	1	10902	10902		43.626	0	1	168710	+		60924	27972	50272	50317	66743	66743					0.1419760359300426
VLLFQMGNP	9	Unmodified	_VLLFQMGNP_					0	0	0			REV__nc|ENSG00000078403|P55197-2|MLLT10	REV__nc|ENSG00000078403|P55197-2|MLLT10	MULTI-SECPEP	OvCa9_classI_Rep3	3	509.8043212890625	2	509.773145	1017.53174	1.6223	0.00082702	1.3273	0.0006766	2.9496	0.0015036	509.77368793188765	112	0.64071	110.89	110.7	111.34	-1.1038					22	12	3	0	0	0	0.027462	1	8207	8207		52.299	26.849	1	42706	+		60925	28737	50273	50318	66744	66744					0.023673020594969785
VLLFTAMLL	9	Unmodified	_VLLFTAMLL_					0	0	0		tr|A0A553SR07|A0A553SR07_NIACIIron-hydroxamateABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_00065PE=3SV=1	tr|A0A553SR07|A0A553SR07_NIACIIron-hydroxamateABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_00065PE=3SV=1	tr|A0A553SR07|A0A553SR07_NIACIIron-hydroxamateABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_00065PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.81280517578125	2	510.811739	1019.60893	1.1975	0.00061168	2.2274	0.0011378	3.4249	0.0017495	510.81271666238405	129.4	1.3345	127.95	127.5	128.83	-1.4565					56	26	3	0	0	0	0.39645	1	12395	12395		52.299	2.2746	1	185240			60926	34215	50274	50319	66745	66745					0.09990520275823656
VLLFVITCL	9	Unmodified	_VLLFVITCL_					0	0	0			REV__ENSG00000163251|ENST00000295417|FZD5	REV__ENSG00000163251|ENST00000295417|FZD5	MULTI-MSMS	OvCa9_classI_Rep2	2	510.8133850097656	2	510.811739	1019.60893	1.0663	0.00054468	2.2821	0.0011657	3.3484	0.0017104	510.8128294751169	128.19	1.0362	127.96	127.49	128.53	-0.22697					40	20	3	0	0	0	0.65476	1	12582	12582		25.45	2.4077	1	158260	+		60927	20821	50275	50320	66746	66746					0.09990520275800918
VLLGKVYVV	9	Unmodified	_VLLGKVYVV_					0	0	0		nc|ENSG00000114796|Q6TFL4-2|KLHL24;ENSG00000114796|ENST00000242810|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	MULTI-MSMS	OvCa99_classI_Rep5	1	495.3243103027344	2	495.323328	988.632104	-2.6448	-0.00131	0.34242	0.00016961	-2.3024	-0.0011404	495.32343607693826	103.94	1.7588	103.94	103.64	105.4	0					107	40	4	0	0	0	0.11171	2	11617	11617;11644		94.006	25.522	1	11551000			60928	3042	50276	50321	66747;66748	66747					0.13733282384794165
VLLGKVYVV	9	Unmodified	_VLLGKVYVV_					0	0	0		nc|ENSG00000114796|Q6TFL4-2|KLHL24;ENSG00000114796|ENST00000242810|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	MULTI-MSMS	OvCa9_classI_Rep2	2	495.3221435546875	2	495.323328	988.632104	-0.33743	-0.00016714	0.094885	4.6999E-05	-0.24255	-0.00012014	495.32325174233563	104.47	2.4848	103.9	103.57	106.06	-0.57639					111	49	3	0	0	0	0.11171	3	9677	9671;9677;9683		94.006	40.828	1	462520			60929	3042	50276	50321	66749;66750;66751	66750					0.13733282384794165
VLLGKVYVV	9	Unmodified	_VLLGKVYVV_					0	0	0		nc|ENSG00000114796|Q6TFL4-2|KLHL24;ENSG00000114796|ENST00000242810|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	MULTI-MSMS	OvCa9_classI_Rep3	3	495.3231506347656	2	495.323328	988.632104	0.25011	0.00012389	-0.49017	-0.00024279	-0.24006	-0.00011891	495.3229391083299	105.42	1.8167	104.07	103.68	105.49	-1.3482					105	34	4	0	0	0	0.21395	5	7386	7381;7386;7391;7397;7404		73.975	29.858	1	538610			60930	3042	50276	50321	66752;66753;66754;66755;66756	66753					0.13733282384794165
VLLGKVYVV	9	Unmodified	_VLLGKVYVV_					0	0	0		nc|ENSG00000114796|Q6TFL4-2|KLHL24;ENSG00000114796|ENST00000242810|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.3243103027344	2	495.323328	988.632104	-0.52688	-0.00026097	0.32729	0.00016211	-0.19959	-9.8859E-05	495.3233286333838	106.07	1.8591	104.06	103.7	105.55	-2.0161					100	35	4	0	0	0	0.16524	3	9645	9645;9657;9670		82.305	28.954	1	565860			60931	3042	50276	50321	66757;66758;66759	66757					0.13733282384794165
VLLGLIMCVSL	11	Unmodified	_VLLGLIMCVSL_					0	0	0		ENSG00000184194|ENST00000332582|GPR173	ENSG00000184194|ENST00000332582|GPR173	ENSG00000184194|ENST00000332582|GPR173	MULTI-SECPEP	OvCa9_classI_Rep2	2	580.30224609375	2	580.842713	1159.67087	-1.9604	-0.0011387	-3.7314	-0.0021673	-5.6918	-0.003306	580.8408462357191	63.319	0.89417	60.574	60.161	61.055	-2.7444					22	16	2	0	0	0	0.025329	1	4834	4834		35.618	11.416	1	19465			60932	8135	50277	50322	66760	66760					0.09742503632651278
VLLGTSKK	8	Unmodified	_VLLGTSKK_					0	0	0		tr|A0A553SHF1|A0A553SHF1_NIACIDihydropteroatesynthaseOS=NialliacirculansOX=1397GN=folPPE=3SV=1	tr|A0A553SHF1|A0A553SHF1_NIACIDihydropteroatesynthaseOS=NialliacirculansOX=1397GN=folPPE=3SV=1	tr|A0A553SHF1|A0A553SHF1_NIACIDihydropteroatesynthaseOS=NialliacirculansOX=1397GN=folPPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	423.2749328613281	2	423.276378	844.538203	-1.0746	-0.00045487	-1.9263	-0.00081535	-3.0009	-0.0012702	423.27545611036373	140.26	1.6211	140.03	139.45	141.07	-0.22696					84	32	4	0	0	0	0.75208	1	14032	14032		17.365	3.5896	1	166850			60933	33264	50278	50323	66761	66761					0.10971563282521402
VLLHKRQK	8	Unmodified	_VLLHKRQK_					0	0	0			REV__ENST00000569901.1_1_16:89804185-89804651:+|nuORF	REV__ENST00000569901.1_1_16:89804185-89804651:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	511.3349304199219	2	511.335093	1020.65563	1.2132	0.00062035	1.2086	0.00061798	2.4218	0.0012383	511.33557175390297	127.02	1.4474	125.94	125.6	127.05	-1.0715					62	27	4	0	0	0	0.69415	1	9948	9948		44.531	2.1349	1	200840	+		60934	20583	50279	50324	66762	66762					0.14613140941980873
VLLHSAAVVL	10	Unmodified	_VLLHSAAVVL_					0	0	0			REV__ENSG00000164742|ENST00000297323|ADCY1	REV__ENSG00000164742|ENST00000297323|ADCY1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.843994140625	2	511.32386	1020.63317	-2.3952	-0.0012247	1.6866	0.00086241	-0.70863	-0.00036234	511.3244934606247	125.93	0.58757	124.52	124.24	124.83	-1.4143					18	11	2	0	0	0	0.026982	1	11948	11948		23.042	3.6825	1	22739	+		60935	21016	50280	50325	66763	66763					0.12367496753699925
VLLHSAAVVL	10	Unmodified	_VLLHSAAVVL_					0	0	0			REV__ENSG00000164742|ENST00000297323|ADCY1	REV__ENSG00000164742|ENST00000297323|ADCY1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	511.32386	1020.63317	1.5427	0.00078882	-2.4381	-0.0012467	-0.89538	-0.00045783	511.32256767028895	125.63	0.5144	124.58	124.37	124.88	-1.0519	0.071587	-0.0011914	NaN	23.042	18	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26492	+		60936	21016	50280	50325							0.12367496753699925
VLLHTLLVI	9	Unmodified	_VLLHTLLVI_					0	0	0			REV__nc|ENSG00000138613|Q8WW43-2|APH1B	REV__nc|ENSG00000138613|Q8WW43-2|APH1B	MULTI-MSMS	OvCa9_classI_Rep2	2	510.84423828125	2	510.844428	1019.6743	0.099341	5.0748E-05	-0.6189	-0.00031616	-0.51956	-0.00026541	510.8440612216227	123.45	4.7392	123.21	122.74	127.48	-0.23193					211	95	5	0	0	0	0.52083	1	12101	12101		40.573	3.4135	1	2560200	+		60937	19547	50281	50326	66764	66764					0.1652525779318239
VLLHTLLVI	9	Unmodified	_VLLHTLLVI_					0	0	0			REV__nc|ENSG00000138613|Q8WW43-2|APH1B	REV__nc|ENSG00000138613|Q8WW43-2|APH1B	MULTI-MSMS	OvCa9_classI_Rep3	3	510.8436279296875	2	510.844428	1019.6743	1.4399	0.00073557	-1.9888	-0.001016	-0.54888	-0.00028039	510.84340100881786	124.3	4.2588	123.26	122.82	127.08	-1.0377					208	81	5	0	0	0	0.27546	1	9666	9666		65.803	0	1	3150800	+		60938	19547	50281	50326	66765	66765					0.1652525779318239
VLLHTLLVI	9	Unmodified	_VLLHTLLVI_					0	0	0			REV__nc|ENSG00000138613|Q8WW43-2|APH1B	REV__nc|ENSG00000138613|Q8WW43-2|APH1B	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.843994140625	2	510.844428	1019.6743	-1.3602	-0.00069483	0.80064	0.000409	-0.55952	-0.00028583	510.84481256309454	124.63	4.041	123.24	122.82	126.86	-1.3908					202	79	5	0	0	0	0.59983	1	11948	11948		31.955	0	1	3429700	+		60939	19547	50281	50326	66766	66766					0.1652525779318239
VLLHVSVLL	9	Unmodified	_VLLHVSVLL_					0	0	0		ENSG00000174165|ENST00000310442|ZDHHC24	ENSG00000174165|ENST00000310442|ZDHHC24	ENSG00000174165|ENST00000310442|ZDHHC24	MULTI-MSMS	OvCa99_classI_Rep5	1	496.82965087890625	2	496.828778	991.643003	1.6069	0.00079835	0.2617	0.00013002	1.8686	0.00092837	496.82874976340844	126.52	1.0483	126.52	126.18	127.23	0					56	22	3	0	0	0	0.13154	2	14620	14620;14643		88.643	38.618	1	432270			60940	7444	50282	50327	66767;66768	66767					0.14684684759083666
VLLIDRDN	8	Unmodified	_VLLIDRDN_					0	0	0			REV__tr|A0A7D6ZJ76|A0A7D6ZJ76_9CLOTTyrosine-typerecombinase/integraseOS=ClostridiumintestinaleOX=36845GN=HZF06_10145PE=4SV=1	REV__tr|A0A7D6ZJ76|A0A7D6ZJ76_9CLOTTyrosine-typerecombinase/integraseOS=ClostridiumintestinaleOX=36845GN=HZF06_10145PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	479.2735595703125	2	479.271824	956.529095	1.0531	0.00050473	-0.11138	-5.3381E-05	0.94175	0.00045135	479.27146410383295	157.16	0.55061	157.16	156.85	157.4	0					23	10	3	0	0	0	0.73938	1	18418	18418		31.955	2.7848	1	111060	+		60941	32080	50283	50328	66769	66769					0.049091699261907706
VLLIDRDN	8	Unmodified	_VLLIDRDN_					0	0	0			REV__tr|A0A7D6ZJ76|A0A7D6ZJ76_9CLOTTyrosine-typerecombinase/integraseOS=ClostridiumintestinaleOX=36845GN=HZF06_10145PE=4SV=1	REV__tr|A0A7D6ZJ76|A0A7D6ZJ76_9CLOTTyrosine-typerecombinase/integraseOS=ClostridiumintestinaleOX=36845GN=HZF06_10145PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	479.271824	956.529095	1.0531	0.00050473	-0.11138	-5.3381E-05	0.94175	0.00045135	479.27146410383295	157.16	0.55061	157.16	156.85	157.4	0	0	0	NaN	31.955	23	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	111060	+		60942	32080	50283	50328							0.049091699261907706
VLLIFFMF	8	Unmodified	_VLLIFFMF_					0	0	0			REV__tr|A0A7D7A2J7|A0A7D7A2J7_9CLOTMultidrugresistanceeffluxtransporterfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08755PE=4SV=1	REV__tr|A0A7D7A2J7|A0A7D7A2J7_9CLOTMultidrugresistanceeffluxtransporterfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08755PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.2821655273438	2	515.295725	1028.5769	-1.6453	-0.00084781	4.148	0.0021374	2.5027	0.0012896	515.2965469049786	107.18	0.21082	105.3	105.12	105.33	-1.8785					8	3	3	0	0	0	0.028476	1	9766	9766		16.705	0	1	28604	+		60943	32540	50284	50329	66770	66770					0.06375152592681843
VLLIILSHI	9	Unmodified	_VLLIILSHI_					0	0	0		ENSG00000205409|ENST00000329322|OR52E6	ENSG00000205409|ENST00000329322|OR52E6	ENSG00000205409|ENST00000329322|OR52E6	MULTI-MSMS	OvCa9_classI_Rep2	2	510.8440246582031	2	510.844428	1019.6743	0.099341	5.0748E-05	-0.6189	-0.00031616	-0.51956	-0.00026541	510.8440612216227	123.45	4.7392	123.21	122.74	127.48	-0.23193					211	95	5	0	0	0	0.1595	1	12017	12017		83.287	0.98216	1	2560200			60944	9071	50285	50330	66771	66771					0.1652525779318239
VLLIILSHI	9	Unmodified	_VLLIILSHI_					0	0	0		ENSG00000205409|ENST00000329322|OR52E6	ENSG00000205409|ENST00000329322|OR52E6	ENSG00000205409|ENST00000329322|OR52E6	MULTI-MSMS	OvCa9_classI_Rep3	3	510.8434143066406	2	510.844428	1019.6743	1.4399	0.00073557	-1.9888	-0.001016	-0.54888	-0.00028039	510.84340100881786	124.3	4.2588	123.26	122.82	127.08	-1.0377					208	81	5	0	0	0	0.39645	1	9734	9734		52.299	0	1	3150800			60945	9071	50285	50330	66772	66772					0.1652525779318239
VLLILSPRL	9	Unmodified	_VLLILSPRL_					0	0	0			REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|299|2|anti-sense	REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|299|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	512.71533203125	2	512.349877	1022.6852	1.159	0.0005938	-0.8964	-0.00045927	0.26258	0.00013453	512.3494035460366	128.93	1.0881	128.7	128.43	129.51	-0.22696					27	21	2	0	0	0	0.027462	1	12727	12727		37.159	0	1	51039	+		60946	28209	50286	50331	66773	66773					0.17476660167460523
VLLILSPRL	9	Unmodified	_VLLILSPRL_					0	0	0			REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|299|2|anti-sense	REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|299|2|anti-sense	MULTI-MATCH	OvCa9_classI_Rep3	3		2	512.349877	1022.6852	0.60508	0.00031001	-0.37854	-0.00019394	0.22654	0.00011607	512.3494221051783	130.11	0.69246	129	128.68	129.38	-1.1121	0.15591	0.00084479	NaN	37.159	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28307	+		60947	28209	50286	50331							0.17476660167460523
VLLIRNKEWRV	11	Unmodified	_VLLIRNKEWRV_					0	0	0			REV__ENSG00000130702|ENST00000252999|LAMA5	REV__ENSG00000130702|ENST00000252999|LAMA5	MULTI-MSMS	OvCa9_classI_Rep2	2	475.9612121582031	3	475.961144	1424.8616	-0.45243	-0.00021534	-0.005534	-2.634E-06	-0.45797	-0.00021797	475.961148400905	105.53	2.2396	105.1	104.7	106.94	-0.43642					127	44	4	0	0	0	0.72516	1	9805	9805		13.508	0	1	485280	+		60948	18961	50287	50332	66774	66774					0.1661666933057404
VLLIRNKEWRV	11	Unmodified	_VLLIRNKEWRV_					0	0	0			REV__ENSG00000130702|ENST00000252999|LAMA5	REV__ENSG00000130702|ENST00000252999|LAMA5	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.9621276855469	3	475.961144	1424.8616	-1.6329	-0.00077717	1.0267	0.00048867	-0.60615	-0.0002885	475.9615468309244	107.77	2.2527	105.89	105.54	107.79	-1.8785					122	44	4	0	0	0	0.72542	1	9855	9855		10.104	0	1	542170	+		60949	18961	50287	50332	66775	66775					0.1661666933057404
VLLISKVSD	9	Unmodified	_VLLISKVSD_					0	0	0			REV__ENST00000376723.7_1_2:128947470-128947854:+|nuORF	REV__ENST00000376723.7_1_2:128947470-128947854:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.2982482910156	2	487.30005	972.585547	-1.2796	-0.00062354	-1.8069	-0.00088051	-3.0865	-0.0015041	487.29906414689214	146.58	1.2256	145.15	144.7	145.92	-1.4357					56	23	3	0	0	0	0.63422	1	14403	14403		27.882	0	1	319100	+		60950	25105	50288	50333	66776	66776					0.09815797762848888
VLLIVICLL	9	Unmodified	_VLLIVICLL_					0	0	0			REV__ENSG00000113361|ENST00000265071|CDH6	REV__ENSG00000113361|ENST00000265071|CDH6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.7647399902344	2	499.837757	997.660961	-1.2364	-0.00061797	-3.6093	-0.0018041	-4.8456	-0.002422	499.8368124287051	127.61	0.24901	126.17	126.04	126.29	-1.4357					7	4	3	0	0	0	0.02744	1	12166	12166		60.404	0	1	24687	+		60951	18147	50289	50334	66777	66777					0.16203683689559512
VLLKARLVPA	10	Unmodified	_VLLKARLVPA_					0	0	0		nc|ENSG00000144369|Q6P995-2|FAM171B;ENSG00000144369|ENST00000304698|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	nc|ENSG00000144369|Q6P995-2|FAM171B	MULTI-MSMS	OvCa99_classI_Rep5	1	540.3696899414062	2	540.368601	1078.72265	2.1544	0.0011642	0.051138	2.7633E-05	2.2055	0.0011918	540.3684979024346	77.228	1.0017	77.228	76.882	77.884	0					51	23	3	0	0	0	0.31157	1	7766	7766		79.451	31.535	1	1727800			60952	5146	50290	50335	66778	66778					0.18643751433069156
VLLKGLNKLV	10	Unmodified	_VLLKGLNKLV_					0	0	0			REV__tr|A0A7D6VTC2|A0A7D6VTC2_9CLOTTrkHfamilypotassiumuptakeproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16710PE=3SV=1	REV__tr|A0A7D6VTC2|A0A7D6VTC2_9CLOTTrkHfamilypotassiumuptakeproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16710PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.7835693359375	2	548.876259	1095.73797	2.1521	0.0011813	-0.39197	-0.00021514	1.7602	0.00096612	548.8759495737477	120.8	0.68549	120.8	120.61	121.29	0					28	15	3	0	0	0	0.027021	1	13886	13886		29.15	3.6994	1	441960	+		60953	31592	50291	50336	66779	66779					0.19392618230267544
VLLKIVEQI	9	Unmodified	_VLLKIVEQI_					0	0	0		nc|ENSG00000149781|Q86UX7|FERMT3;ENSG00000149781|ENST00000345728|FERMT3	nc|ENSG00000149781|Q86UX7|FERMT3	nc|ENSG00000149781|Q86UX7|FERMT3	MULTI-MSMS	OvCa99_classI_Rep5	1	527.84814453125	2	527.847167	1053.67978	2.2162	0.0011698	0.0030904	1.6312E-06	2.2193	0.0011715	527.8469930228465	116.3	1.7395	116.3	115.91	117.65	0					81	37	4	0	0	0	0.013371	1	13294	13294		158.07	18.104	1	1089000			60954	15087	50292	50337	66780	66780					0.1550893658500172
VLLKKSGG	8	Unmodified	_VLLKKSGG_					0	0	0			REV__ENSG00000101596|ENST00000320876|SMCHD1	REV__ENSG00000101596|ENST00000320876|SMCHD1	MULTI-MSMS	OvCa9_classI_Rep3	3	401.2622985839844	2	401.263271	800.511988	-0.21441	-8.6037E-05	-2.9352	-0.0011778	-3.1496	-0.0012638	401.26203375308216	137.05	1.2653	135.96	135.51	136.78	-1.0858					61	25	3	0	0	0	0.74595	1	11134	11134		14.664	0	1	224680	+		60955	17507	50293	50338	66781	66781					0.10375294111054245
VLLKRLQDV	9	Unmodified	_VLLKRLQDV_					0	0	0		ENSG00000080839|ENST00000373664|RBL1	ENSG00000080839|ENST00000373664|RBL1	ENSG00000080839|ENST00000373664|RBL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.348876953125	2	542.347866	1082.68118	-0.44501	-0.00024135	0.00017241	9.3509E-08	-0.44484	-0.00024126	542.3476980873517	59.42	2.0278	56.028	55.755	57.782	-3.392					97	40	4	0	0	0	0.22961	1	3974	3974		71.296	5.4925	1	794850			60956	1644	50294	50339	66782	66782					0.143145706737414
VLLKRSLIA	9	Unmodified	_VLLKRSLIA_					0	0	0			REV__ENSG00000120800|ENST00000261637|UTP20	REV__ENSG00000120800|ENST00000261637|UTP20	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.3248291015625	2	506.847502	1011.68045	-0.87724	-0.00044463	0.65155	0.00033024	-0.22568	-0.00011439	506.84768957369596	75.4	1.0331	73.547	73.116	74.149	-1.854					58	19	4	0	0	0	0.027462	1	6247	6247		26.796	0	1	197650	+		60957	18516	50295	50340	66783	66783					0.17507776024694977
VLLKVDRVT	9	Unmodified	_VLLKVDRVT_					0	0	0			REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B;REV__KDM2B|p.T484Hfs*28|1|0.13|ENSG00000089094|chr12:121509765-121509766|-/A|frameshift_variant	REV__nc|ENSG00000089094|Q8NHM5-4|KDM2B	MULTI-MSMS	OvCa99_classI_Rep5	1	521.8328247070312	2	521.834591	1041.65463	-0.62411	-0.00032568	1.3965	0.00072876	0.77242	0.00040308	521.8351197363555	71.145	0.96175	71.145	70.954	71.916	0					54	23	3	0	0	0	0.16524	1	6854	6854		82.305	0.064519	1	2409600	+		60958	17199;28329	50296	50341	66784	66784					0.13546881782417586
VLLLCISLF	9	Unmodified	_VLLLCISLF_					0	0	0			REV__tr|A0A553SFB9|A0A553SFB9_NIACIHigh-affinityhemeuptakesystemproteinIsdEOS=NialliacirculansOX=1397GN=isdEPE=3SV=1	REV__tr|A0A553SFB9|A0A553SFB9_NIACIHigh-affinityhemeuptakesystemproteinIsdEOS=NialliacirculansOX=1397GN=isdEPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	510.81414794921875	2	510.811739	1019.60893	1.0663	0.00054468	2.2821	0.0011657	3.3484	0.0017104	510.8128294751169	128.19	1.0362	127.96	127.49	128.53	-0.22697					40	20	3	0	0	0	0.6653	1	12595	12595		24.203	0	1	158260	+		60959	29561	50297	50342	66785	66785					0.09990520275835024
VLLLDEPSL	9	Unmodified	_VLLLDEPSL_					0	0	0		tr|A0A7D6VXD3|A0A7D6VXD3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12430PE=3SV=1	tr|A0A7D6VXD3|A0A7D6VXD3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12430PE=3SV=1	tr|A0A7D6VXD3|A0A7D6VXD3_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12430PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.7647399902344	2	499.792058	997.569563	-1.228	-0.00061372	0.67757	0.00033864	-0.55038	-0.00027508	499.79270612874143	127.49	0.60812	126.05	125.89	126.5	-1.4357					24	11	4	0	0	0	0.027433	1	12166	12166		57.811	2.3071	1	36041			60960	35275	50298	50343	66786	66786					0.07068091525957243
VLLLHQLS	8	Unmodified	_VLLLHQLS_					0	0	0		nc|ENSG00000183977|A8MPX8-2|PP2D1;nc|ENSG00000183977|A8MPX8-3|PP2D1;ENSG00000183977|ENST00000389050|PP2D1	nc|ENSG00000183977|A8MPX8-2|PP2D1	nc|ENSG00000183977|A8MPX8-2|PP2D1	MULTI-MSMS	OvCa99_classI_Rep5	1	461.7915344238281	2	461.789653	921.564752	2.053	0.00094805	0.35347	0.00016323	2.4065	0.0011113	461.78968729403266	95.565	0.79732	95.565	95.328	96.126	0					40	18	3	0	0	0	0.32444	1	10436	10436		102.77	1.5618	1	1409500			60961	8126	50299	50344	66787	66787					0.10083252173853907
VLLLISHII	9	Unmodified	_VLLLISHII_					0	0	0			REV__ENSG00000153404|ENST00000637938|PLEKHG4B	REV__ENSG00000153404|ENST00000637938|PLEKHG4B	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.8442077636719	2	510.844428	1019.6743	-1.3602	-0.00069483	0.80064	0.000409	-0.55952	-0.00028583	510.84481256309454	124.63	4.041	123.24	122.82	126.86	-1.3908					202	79	5	0	0	0	0.44294	1	11923	11923		47.916	0	1	3429700	+		60962	20340	50300	50345	66788	66788					0.1652525779318239
VLLLKELSP	9	Unmodified	_VLLLKELSP_					0	0	0			REV__ENST00000336498.7_1_4:148993662-148993770:+|nuORF	REV__ENST00000336498.7_1_4:148993662-148993770:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	506.3248291015625	2	506.326068	1010.63758	-0.92734	-0.00046954	-1.9121	-0.00096816	-2.8395	-0.0014377	506.3249489842302	75.656	1.4	73.802	73.481	74.881	-1.854					86	26	4	0	0	0	0.53957	1	6247	6247		38.806	0	1	667480	+		60963	24586	50301	50346	66789	66789					0.13268961176606808
VLLLKPGDRV	10	Unmodified	_VLLLKPGDRV_					0	0	0		COL8A1|p.R709K|1|0.58|ENSG00000144810|chr3:99796027-99796027|G/A|missense_variant	COL8A1|p.R709K|1|0.58|ENSG00000144810|chr3:99796027-99796027|G/A|missense_variant	COL8A1|p.R709K|1|0.58|ENSG00000144810|chr3:99796027-99796027|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	555.3526611328125	2	555.355691	1108.69683	-4.1933	-0.0023288	0.44804	0.00024882	-3.7453	-0.00208	555.3557970844861	158.57	1.1439	158.34	158.06	159.2	-0.22696					59	23	4	0	0	0	0.7759	1	16093	16093		21.96	1.013	1	239990			60964	597	50302	50347	66790	66790					0.14682857190791765
VLLLLAPAR	9	Unmodified	_VLLLLAPAR_					0	0	0		nc|ENSG00000100399|Q6NUI6-2|CHADL;ENSG00000100399|ENST00000216241|CHADL	nc|ENSG00000100399|Q6NUI6-2|CHADL	nc|ENSG00000100399|Q6NUI6-2|CHADL	MULTI-SECPEP	OvCa9_classI_Rep2	2	484.31866455078125	2	483.328945	964.643337	-0.13272	-6.4147E-05	-0.17739	-8.5737E-05	-0.31011	-0.00014988	483.3287763989876	114.48	0.44395	114.36	114.06	114.5	-0.11777					14	8	2	0	0	0	0.027462	1	10902	10902		20.482	12.251	1	15415			60965	2062	50303	50348	66791	66791					0.1596010447892695
VLLLLGHYI	9	Unmodified	_VLLLLGHYI_					0	0	0			REV__tr|A0A553SSP7|A0A553SSP7_NIACIYwiC-likeproteinOS=NialliacirculansOX=1397GN=CEQ21_03390PE=4SV=1	REV__tr|A0A553SSP7|A0A553SSP7_NIACIYwiC-likeproteinOS=NialliacirculansOX=1397GN=CEQ21_03390PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.3123168945312	2	520.828778	1039.643	1.7489	0.00091086	1.5314	0.00079762	3.2803	0.0017085	520.8306549524142	79.965	0.70495	79.965	79.783	80.487	0					19	16	2	0	0	0	0.027462	1	8200	8200		29.842	8.1392	1	790990	+		60966	30861	50304	50349	66792	66792					0.12476684759076306
VLLLLKKLT	9	Unmodified	_VLLLLKKLT_					0	0	0			REV__ENSG00000066279|ENST00000367409|ASPM	REV__ENSG00000066279|ENST00000367409|ASPM	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.3098754882812	2	520.875728	1039.7369	0.22929	0.00011943	3.9644	0.0020649	4.1937	0.0021844	520.8773082394065	83.189	0.40985	81.59	81.415	81.825	-1.5988					12	8	2	0	0	0	0.027462	1	7113	7113		25.45	4.5032	1	23337	+		60967	16812	50305	50350	66793	66793					0.2186240386135978
VLLLMPRLI	9	Unmodified	_VLLLMPRLI_					0	0	0		nc|ENSG00000204843|Q14203-5|DCTN1;nc|ENSG00000204843|Q14203-2|DCTN1;nc|ENSG00000204843|Q14203-3|DCTN1;nc|ENSG00000204843|Q14203-4|DCTN1;nc|ENSG00000204843|Q14203-6|DCTN1;ENSG00000204843|ENST00000628224|DCTN1;ENST00000466110.5_1_2:74595806-74598423:-|nuORF	nc|ENSG00000204843|Q14203-5|DCTN1	nc|ENSG00000204843|Q14203-5|DCTN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.7862548828125	2	534.354105	1066.69366	1.1271	0.00060229	0.32366	0.00017295	1.4508	0.00077524	534.354187980378	155.11	0.75343	155.11	154.88	155.63	0					23	14	2	0	0	0	0.027462	1	18194	18194		45.952	0	1	46795			60968	9031	50306	50351	66794	66794					0.1629789081243871
VLLLMYGV	8	Oxidation (M)	_VLLLM(Oxidation (M))YGV_		VLLLM(1)YGV		VLLLM(44)YGV	0	0	1			REV__ENSG00000188582|ENST00000340634|PAQR9	REV__ENSG00000188582|ENST00000340634|PAQR9	MULTI-MSMS	OvCa99_classI_Rep5	1	462.26873779296875	2	462.267164	922.519776	-0.59068	-0.00027305	4.4745	0.0020684	3.8838	0.0017953	462.2691368471352	44.506	0.44522	44.506	44.305	44.75	0					21	9	3	0	0	0	0.69862	1	3008	3008		43.626	8.0078	1	707210	+		60969	22720	50307	50352	66795	66795		526			0.055416853163023916
VLLLMYGV	8	Oxidation (M)	_VLLLM(Oxidation (M))YGV_					0	0	1			REV__ENSG00000188582|ENST00000340634|PAQR9	REV__ENSG00000188582|ENST00000340634|PAQR9	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	462.267164	922.519776	-0.59068	-0.00027305	4.4745	0.0020684	3.8838	0.0017953	462.2691368471352	44.506	0.44522	44.506	44.305	44.75	0	0	0	NaN	43.626	21	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	707210	+		60970	22720	50307	50352				526			0.055416853163023916
VLLLPRGAR	9	Unmodified	_VLLLPRGAR_					0	0	0			REV__ENSG00000149633|ENST00000279024|KIAA1755	REV__ENSG00000149633|ENST00000279024|KIAA1755	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.7723693847656	2	497.829643	993.644734	-1.1649	-0.0005799	0.6845	0.00034077	-0.48036	-0.00023914	497.8299698533985	71.825	0.63119	68.369	68.024	68.656	-3.4563					18	12	2	0	0	0	0.027462	1	5475	5475		18.324	5.3652	1	18468	+		60971	20173	50308	50353	66796	66796					0.14765738567689368
VLLLQPKIP	9	Unmodified	_VLLLQPKIP_					0	0	0		nc|ENSG00000174606|Q5VTE6-2|ANGEL2;ANGEL2|p.I403Sfs*15|1|0.07|ENSG00000174606|chr1:213000840-213000840|T/-|frameshift_variant;ENSG00000174606|ENST00000366962|ANGEL2	nc|ENSG00000174606|Q5VTE6-2|ANGEL2	nc|ENSG00000174606|Q5VTE6-2|ANGEL2	MULTI-MSMS	OvCa9_classI_Rep2	2	510.8442687988281	2	510.844428	1019.6743	0.099341	5.0748E-05	-0.6189	-0.00031616	-0.51956	-0.00026541	510.8440612216227	123.45	4.7392	123.21	122.74	127.48	-0.23193					211	95	5	0	0	0	0.14739	2	11986	11986;12005		85.359	3.0545	1	2560200			60972	89	50309	50354	66797;66798	66797					0.16525257793159653
VLLLQPKIP	9	Unmodified	_VLLLQPKIP_					0	0	0		nc|ENSG00000174606|Q5VTE6-2|ANGEL2;ANGEL2|p.I403Sfs*15|1|0.07|ENSG00000174606|chr1:213000840-213000840|T/-|frameshift_variant;ENSG00000174606|ENST00000366962|ANGEL2	nc|ENSG00000174606|Q5VTE6-2|ANGEL2	nc|ENSG00000174606|Q5VTE6-2|ANGEL2	MULTI-MSMS	OvCa9_classI_Rep3	3	510.8434143066406	2	510.844428	1019.6743	1.4399	0.00073557	-1.9888	-0.001016	-0.54888	-0.00028039	510.84340100881786	124.3	4.2588	123.26	122.82	127.08	-1.0377					208	81	5	0	0	0	0.25214	1	9599	9599		68.485	16.186	1	3150800			60973	89	50309	50354	66799	66799					0.16525257793159653
VLLLQWWR	8	Unmodified	_VLLLQWWR_					0	0	0			REV__ENSG00000141012|ENST00000268695|GALNS	REV__ENSG00000141012|ENST00000268695|GALNS	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.27783203125	2	557.332019	1112.64948	2.0579	0.0011469	-3.0067	-0.0016757	-0.94879	-0.00052879	557.3303478179155	125.72	0.50938	125.72	125.53	126.04	0					16	10	2	0	0	0	0.028476	1	14569	14569		8.8223	2.5097	1	145460	+		60974	19716	50310	50355	66800	66800					0.09766622710435513
VLLLRKAEKRW	11	Unmodified	_VLLLRKAEKRW_					0	0	0			REV__ENST00000477859.1_1_7:20421307-20421520:+|nuORF	REV__ENST00000477859.1_1_7:20421307-20421520:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	471.30145263671875	3	471.301389	1410.88234	-0.63869	-0.00030102	0.16063	7.5706E-05	-0.47806	-0.00022531	471.3014299108496	26.199	0.50008	26.199	26.042	26.542	0					26	9	4	0	0	0	0.72477	1	662	662		18.531	1.3643	1	143580	+		60975	17762	50311	50356	66801	66801					0.193332597102426
VLLLSNIPA	9	Unmodified	_VLLLSNIPA_					0	0	0			REV__ENST00000506393.5_1_5:140047926-140048692:+|nuORF	REV__ENST00000506393.5_1_5:140047926-140048692:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	470.2960205078125	2	470.29731	938.580068	-0.49251	-0.00023162	-2.9033	-0.0013654	-3.3958	-0.001597	470.29591238963496	32.315	1.7376	29.606	29.382	31.119	-2.7097					90	34	5	0	0	0	0.69123	1	1134	1134		20.947	0	1	1326000	+		60976	18495	50312	50357	66802	66802					0.1083211897101819
VLLLVLPSAE	10	Unmodified	_VLLLVLPSAE_					0	0	0			REV__ENST00000606019.5_1_7:96275054-96276828:-|nuORF	REV__ENST00000606019.5_1_7:96275054-96276828:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.3140258789062	2	527.33135	1052.64815	-0.91823	-0.00048421	-2.7736	-0.0014626	-3.6918	-0.0019468	527.3294663906065	74.705	0.54204	72.295	71.994	72.536	-2.4106					20	10	3	0	0	0	0.026939	1	3715	3715		24.203	0	1	17484	+		60977	28073	50313	50358	66803	66803					0.12392943831036973
VLLLVPVASAL	11	Unmodified	_VLLLVPVASAL_					0	0	0		sp|P09717|US16_HCMVAUncharacterizedproteinHVLF2OS=Humancytomegalovirus(strainAD169)OX=10360GN=US16PE=3SV=2;sp|Q6SVZ0|US16_HCMVMProteinUS16OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US16PE=3SV=1	sp|P09717|US16_HCMVAUncharacterizedproteinHVLF2OS=Humancytomegalovirus(strainAD169)OX=10360GN=US16PE=3SV=2	sp|P09717|US16_HCMVAUncharacterizedproteinHVLF2OS=Humancytomegalovirus(strainAD169)OX=10360GN=US16PE=3SV=2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.2482299804688	2	547.862818	1093.71108	-0.48519	-0.00026582	-0.13725	-7.5194E-05	-0.62244	-0.00034101	547.8625870194727	121.8	0.92912	120.45	119.95	120.88	-1.3479					28	17	2	0	0	0	0.025853	1	11526	11526		27.882	6.9353	1	19625			60978	32886	50314	50359	66804	66804					0.16797509619073026
VLLLVPVASAL	11	Unmodified	_VLLLVPVASAL_					0	0	0		sp|P09717|US16_HCMVAUncharacterizedproteinHVLF2OS=Humancytomegalovirus(strainAD169)OX=10360GN=US16PE=3SV=2;sp|Q6SVZ0|US16_HCMVMProteinUS16OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US16PE=3SV=1	sp|P09717|US16_HCMVAUncharacterizedproteinHVLF2OS=Humancytomegalovirus(strainAD169)OX=10360GN=US16PE=3SV=2	sp|P09717|US16_HCMVAUncharacterizedproteinHVLF2OS=Humancytomegalovirus(strainAD169)OX=10360GN=US16PE=3SV=2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	547.862818	1093.71108	-0.97846	-0.00053606	0.62794	0.00034403	-0.35052	-0.00019203	547.8629491968811	120.58	0.93736	120.38	119.96	120.9	-0.19718	-0.023127	0.00096515	NaN	27.882	25	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10702			60979	32886	50314	50359							0.16797509619073026
VLLLVPVASAL	11	Unmodified	_VLLLVPVASAL_					0	0	0		sp|P09717|US16_HCMVAUncharacterizedproteinHVLF2OS=Humancytomegalovirus(strainAD169)OX=10360GN=US16PE=3SV=2;sp|Q6SVZ0|US16_HCMVMProteinUS16OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US16PE=3SV=1	sp|P09717|US16_HCMVAUncharacterizedproteinHVLF2OS=Humancytomegalovirus(strainAD169)OX=10360GN=US16PE=3SV=2	sp|P09717|US16_HCMVAUncharacterizedproteinHVLF2OS=Humancytomegalovirus(strainAD169)OX=10360GN=US16PE=3SV=2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	547.862818	1093.71108	0.7814	0.0004281	-1.2524	-0.00068615	-0.47101	-0.00025805	547.861932134737	121.4	1.0993	120.38	119.91	121.01	-1.0271	-0.023247	-0.0010952	NaN	27.882	36	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19794			60980	32886	50314	50359							0.16797509619073026
VLLLVSAN	8	Unmodified	_VLLLVSAN_					0	0	0			REV__VN1R1|p.N203Kfs*28|1|0.21|ENSG00000178201|chr19:57455878-57455878|G/-|frameshift_variant	REV__VN1R1|p.N203Kfs*28|1|0.21|ENSG00000178201|chr19:57455878-57455878|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	414.76177978515625	2	414.763104	827.511654	-1.3763	-0.00057084	-1.7682	-0.00073337	-3.1445	-0.0013042	414.7623056204016	140.83	3.4972	139.8	137.66	141.16	-1.0339					138	70	4	0	0	0	0.75241	1	11697	11697		25.45	1.2474	1	1080700	+		60981	22050	50315	50360	66805	66805					0.09099874391176854
VLLLVSVRS	9	Unmodified	_VLLLVSVRS_					0	0	0		ENST00000305943.7_2_1:228675067-228675130:+|nuORF	ENST00000305943.7_2_1:228675067-228675130:+|nuORF	ENST00000305943.7_2_1:228675067-228675130:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2703552246094	2	493.32386	984.633166	1.569	0.00077404	4.2506	0.0020969	5.8197	0.002871	493.32591094427164	133.4	0.50952	133.4	133.31	133.82	0					15	10	2	0	0	0	0.027462	1	15508	15508		42.396	10.441	1	51295			60982	10240	50316	50361	66806	66806					0.14023496753702602
VLLLYCLI	8	Unmodified	_VLLLYCLI_					0	0	0			REV__ENSG00000182631|ENST00000330120|RXFP3	REV__ENSG00000182631|ENST00000330120|RXFP3	MULTI-MSMS	OvCa99_classI_Rep5	1	475.79718017578125	2	475.293182	948.571812	1.2052	0.0005728	-1.43	-0.00067965	-0.2248	-0.00010685	475.2915587518552	154.98	1.6202	154.98	154.37	155.99	0					67	31	4	0	0	0	0.69862	1	18197	18197		43.626	10.133	1	116170	+		60983	22306	50317	50362	66807	66807					0.09546848730053625
VLLMLYRA	8	Unmodified	_VLLMLYRA_					0	0	0			REV__nc|ENSG00000132361|O75153|CLUH	REV__nc|ENSG00000132361|O75153|CLUH	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.7631530761719	2	489.793881	977.573209	-0.52727	-0.00025825	3.8872	0.0019039	3.36	0.0016457	489.7957382967155	58.886	0.3872	58.886	58.696	59.083	0					16	9	2	0	0	0	0.028476	1	5026	5026		20.482	0	1	409750	+		60984	19071	50318	50363	66808	66808					0.08352482818816043
VLLMRLRRP	9	Unmodified	_VLLMRLRRP_					0	0	0			REV__nc|ENSG00000006534|P43353-2|ALDH3B1	REV__nc|ENSG00000006534|P43353-2|ALDH3B1	MULTI-MSMS	OvCa9_classI_Rep4_	4	577.3660888671875	2	577.371153	1152.72775	-6.9908	-0.0040363	-0.91541	-0.00052853	-7.9062	-0.0045648	577.3704843168063	161.9	1.6912	160.28	159.86	161.55	-1.6239					125	44	4	0	0	0	0.6653	1	16018	16018		24.203	3.2558	1	1020600	+		60985	16417	50319	50364	66809	66809					0.157497320240509
VLLNYMDD	8	Oxidation (M)	_VLLNYM(Oxidation (M))DD_		VLLNYM(1)DD		VLLNYM(74)DD	0	0	1		tr|A0A7D6ZZ20|A0A7D6ZZ20_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18605PE=4SV=1	tr|A0A7D6ZZ20|A0A7D6ZZ20_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18605PE=4SV=1	tr|A0A7D6ZZ20|A0A7D6ZZ20_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18605PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	499.7659606933594	2	499.7286	997.442648	0.40167	0.00020073	-2.9704	-0.0014844	-2.5687	-0.0012836	499.7274852375854	126.26	0.24626	126.02	125.85	126.1	-0.2359					7	4	2	0	0	0	0.028476	1	12315	12315		73.975	26.059	1	25140			60986	35940	50320	50365	66810	66810		778			-0.05617577690691178
VLLPCCRPGG	10	Unmodified	_VLLPCCRPGG_					0	0	0		nc|ENSG00000121210|A2VDJ0-3|TMEM131L;nc|ENSG00000121210|A2VDJ0|TMEM131L;ENSG00000121210|ENST00000409959|TMEM131L	nc|ENSG00000121210|A2VDJ0-3|TMEM131L	nc|ENSG00000121210|A2VDJ0-3|TMEM131L	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7629089355469	2	507.764797	1013.51504	-1.0595	-0.00053799	-3.0649	-0.0015563	-4.1245	-0.0020943	507.76307961190355	127.55	2.4705	126.11	125.15	127.62	-1.4357					106	48	4	0	0	0	0.58282	1	12217	12217		44.117	9.9443	1	646950			60987	3473	50321	50366	66811	66811					0.008824779018937079
VLLPLRVTL	9	Unmodified	_VLLPLRVTL_					0	0	0		ENSG00000138678|ENST00000264409|GPAT3	ENSG00000138678|ENST00000264409|GPAT3	ENSG00000138678|ENST00000264409|GPAT3	MULTI-MSMS	OvCa99_classI_Rep5	1	512.3516235351562	2	512.349877	1022.6852	1.4232	0.0007292	0.48878	0.00025043	1.912	0.00097962	512.3499940622985	130.62	0.7175	130.62	130.34	131.06	0					39	14	4	0	0	0	0.3076	1	15172	15172		62.107	5.3864	1	809300			60988	4711	50322	50367	66812	66812					0.17476660167460523
VLLPRLPGPG	10	Unmodified	_VLLPRLPGPG_					0	0	0		ENST00000234610.5_1_1:1631484-1633139:+|nuORF	ENST00000234610.5_1_1:1631484-1633139:+|nuORF	ENST00000234610.5_1_1:1631484-1633139:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	509.8043212890625	2	509.824027	1017.6335	1.7801	0.00090752	-3.614	-0.0018425	-1.8339	-0.00093498	509.82226593625563	112.24	0.3443	111.13	110.94	111.29	-1.1038					9	6	2	0	0	0	0.026697	1	8207	8207		55.504	6.2934	1	8678.2			60989	9737	50323	50368	66813	66813					0.12538916473567951
VLLPRSAR	8	Unmodified	_VLLPRSAR_					0	0	0		nc|ENSG00000113163|Q9Y5P4-3|CERT1	nc|ENSG00000113163|Q9Y5P4-3|CERT1	nc|ENSG00000113163|Q9Y5P4-3|CERT1	MULTI-SECPEP	OvCa9_classI_Rep2	2	457.2823181152344	2	456.292894	910.571235	0.56897	0.00025961	-0.75163	-0.00034296	-0.18266	-8.3348E-05	456.2922918649217	57.826	1.0032	55.034	54.674	55.678	-2.792					27	19	2	0	0	0	0.028476	1	4222	4222		17.365	5.8539	1	21586			60990	14965	50324	50369	66814	66814					0.11237190125223151
VLLPRSAR	8	Unmodified	_VLLPRSAR_					0	0	0		nc|ENSG00000113163|Q9Y5P4-3|CERT1	nc|ENSG00000113163|Q9Y5P4-3|CERT1	nc|ENSG00000113163|Q9Y5P4-3|CERT1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	456.292894	910.571235	0.021766	9.9317E-06	-0.75703	-0.00034543	-0.73526	-0.00033549	456.2923758505359	58.492	0.75307	55.1	54.952	55.705	-3.392	0.033228	-2.3962E-06	NaN	17.365	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25343			60991	14965	50324	50369							0.11237190125223151
VLLPRVLVLE	10	Unmodified	_VLLPRVLVLE_					0	0	0		LAMB2|p.A1715Sfs*4|1|0.69|ENSG00000172037|chr3:49121550-49121551|-/T|frameshift_variant;ENSG00000172037|ENST00000305544|LAMB2;LAMB2|p.P767Lfs*29|1|0.06|ENSG00000172037|chr3:49126011-49126012|-/TCCAAGACTTA|frameshift_variant;ENST00000493571.1_1_3:49163084-49163812:-|nuORF	LAMB2|p.A1715Sfs*4|1|0.69|ENSG00000172037|chr3:49121550-49121551|-/T|frameshift_variant	LAMB2|p.A1715Sfs*4|1|0.69|ENSG00000172037|chr3:49121550-49121551|-/T|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.852294921875	2	575.881542	1149.74853	2.2687	0.0013065	0.051428	2.9617E-05	2.3201	0.0013361	575.8811655382224	84.531	0.28478	84.531	84.388	84.672	0					9	6	2	0	0	0	0.02725	1	8836	8836		21.96	12.777	1	213260			60992	7262	50325	50370	66815	66815					0.1796460088467029
VLLPSGLTWLL	11	Unmodified	_VLLPSGLTWLL_					0	0	0			REV__KIF12|p.M112Ifs*35|1|0.18|ENSG00000136883|chr9:114096196-114096197|-/TATTTCCCAAATTAGCATGGAACTTT|frameshift_variant	REV__KIF12|p.M112Ifs*35|1|0.18|ENSG00000136883|chr9:114096196-114096197|-/TATTTCCCAAATTAGCATGGAACTTT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3699951171875	2	606.373549	1210.73255	-2.264	-0.0013728	-4.3442	-0.0026342	-6.6082	-0.0040071	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.72466	1	12429	12429		19.997	1.7347	1	205770	+		60993	28333	50326	50371	66816	66816					0.13560894647821442
VLLQLRYTG	9	Unmodified	_VLLQLRYTG_					0	0	0		ENSG00000095777|ENST00000642920|MYO3A	ENSG00000095777|ENST00000642920|MYO3A	ENSG00000095777|ENST00000642920|MYO3A	MULTI-MSMS	OvCa9_classI_Rep3	3	531.81640625	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.63422	1	11483	11483		27.882	0	1	178650			60994	1939	50327	50372	66817	66817					0.09498308748311501
VLLQLRYTG	9	Unmodified	_VLLQLRYTG_					0	0	0		ENSG00000095777|ENST00000642920|MYO3A	ENSG00000095777|ENST00000642920|MYO3A	ENSG00000095777|ENST00000642920|MYO3A	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.818359375	2	531.818941	1061.62333	0.089047	4.7357E-05	-3.7428	-0.0019905	-3.6538	-0.0019431	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.63422	1	13693	13693		27.882	1.1893	1	263230			60995	1939	50327	50372	66818	66818					0.09498308748311501
VLLQNQQSK	9	Unmodified	_VLLQNQQSK_					0	0	0			REV__ENSG00000155980|ENST00000455537|KIF5A	REV__ENSG00000155980|ENST00000455537|KIF5A	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.3139038085938	2	529.303655	1056.59276	-0.50748	-0.00026861	1.3667	0.0007234	0.85923	0.00045479	529.3039496980945	74.355	1.1787	71.945	71.548	72.726	-2.4106					55	23	3	0	0	0	0.027462	1	3708	3708		30.504	5.0535	1	133650	+		60996	20456	50328	50373	66819	66819					0.0667253036326656
VLLQVGTEAL	10	Unmodified	_VLLQVGTEAL_					0	0	0			REV__tr|A0A553SJK7|A0A553SJK7_NIACINucleotidaseOS=NialliacirculansOX=1397GN=CEQ21_16980PE=3SV=1	REV__tr|A0A553SJK7|A0A553SJK7_NIACINucleotidaseOS=NialliacirculansOX=1397GN=CEQ21_16980PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	521.8126220703125	2	521.810782	1041.60701	0.66684	0.00034797	3.6814	0.001921	4.3482	0.002269	521.8125550496435	68.201	4.7433	65.386	65.063	69.806	-2.8144					153	94	3	0	0	0	0.67931	1	2939	2939		32.812	0	1	529900	+		60997	30014	50329	50374	66820	66820					0.08787182791570558
VLLRAPLL	8	Unmodified	_VLLRAPLL_					0	0	0		ENST00000354700.9_1_1:1228553-1228895:-|nuORF	ENST00000354700.9_1_1:1228553-1228895:-|nuORF	ENST00000354700.9_1_1:1228553-1228895:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	447.809814453125	2	447.810388	893.606223	2.7892	0.001249	-2.8374	-0.0012706	-0.048227	-2.1597E-05	447.80901078809313	136.31	1.365	134.77	134.4	135.76	-1.5437					55	27	3	0	0	0	0.72922	1	13250	13250		37.028	0	1	73419			60998	10665	50330	50375	66821	66821					0.1551643293316829
VLLRGQVNI	9	Unmodified	_VLLRGQVNI_					0	0	0			REV__nc|ENSG00000183844|P58499-2|FAM3B	REV__nc|ENSG00000183844|P58499-2|FAM3B	MULTI-MSMS	OvCa9_classI_Rep2	2	506.3185729980469	2	506.319109	1010.62366	-0.7007	-0.00035478	0.29142	0.00014755	-0.40928	-0.00020722	506.31921288144724	59.031	1.6985	56.251	55.74	57.438	-2.7801					106	32	5	0	0	0	0.32337	1	4287	4287		60.294	0	1	1253400	+		60999	29049	50331	50376	66822	66822					0.11877728468175519
VLLRLKVTF	9	Unmodified	_VLLRLKVTF_					0	0	0			REV__nc|ENSG00000115415|P42224-2|STAT1	REV__nc|ENSG00000115415|P42224-2|STAT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.7503051757812	2	544.863152	1087.71175	2.029	0.0011055	-0.17314	-9.4339E-05	1.8558	0.0010112	544.8626349252465	100.33	0.42342	100.33	100.11	100.53	0					15	9	2	0	0	0	0.027462	1	11113	11113		45.952	0	1	126970	+		61000	18243	50332	50377	66823	66823					0.17140349058786342
VLLRLLRRL	9	Unmodified	_VLLRLLRRL_					0	0	0			REV__nc|ENSG00000006327|Q9NP84-2|TNFRSF12A	REV__nc|ENSG00000006327|Q9NP84-2|TNFRSF12A	MULTI-SECPEP	OvCa9_classI_Rep2	2	576.3541259765625	2	576.408592	1150.80263	-0.23909	-0.00013781	2.4871	0.0014336	2.248	0.0012958	576.4097903860181	71.77	0.20742	69.263	69.121	69.329	-2.5072					5	3	2	0	0	0	0.027462	1	5781	5781		30.504	0	1	6074.1	+		61001	16414	50333	50378	66824	66824					0.23326237826950091
VLLRQEKEM	9	Unmodified	_VLLRQEKEM_					0	0	0			REV__nc|ENSG00000126001|Q9BV73-2|CEP250	REV__nc|ENSG00000126001|Q9BV73-2|CEP250	MULTI-MSMS	OvCa99_classI_Rep5	1	573.3265380859375	2	573.320991	1144.62743	1.0215	0.00058562	3.772	0.0021625	4.7934	0.0027482	573.3230447646893	150.13	1.1006	150.13	149.84	150.94	0					44	21	3	0	0	0	0.56889	1	17588	17588		35.618	4.0885	1	205480	+		61002	18766	50334	50379	66825	66825					0.0609003017973464
VLLSDRFLL	9	Unmodified	_VLLSDRFLL_					0	0	0			REV__ENST00000398073.6_1_12:58216199-58216532:-|nuORF	REV__ENST00000398073.6_1_12:58216199-58216532:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.2835693359375	2	538.329142	1074.64373	2.7149	0.0014615	-0.90182	-0.00048548	1.8131	0.00097605	538.3283004902398	96.205	0.50315	96.205	95.956	96.459	0					19	11	2	0	0	0	0.027426	1	10523	10523		56.721	5.3856	1	389830	+		61003	25371	50335	50380	66826	66826					0.10939479408125408
VLLSEILHL	9	Unmodified	_VLLSEILHL_					0	0	0		nc|ENSG00000075151|O43432|EIF4G3;nc|ENSG00000075151|O43432-3|EIF4G3;ENSG00000075151|ENST00000602326|EIF4G3;nc|ENSG00000075151|O43432-4|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	nc|ENSG00000075151|O43432|EIF4G3	MULTI-MSMS	OvCa99_classI_Rep5	1	518.8248901367188	2	518.823692	1035.63283	0.85922	0.00044578	1.2828	0.00066554	2.142	0.0011113	518.8243139868886	143.93	1.2242	143.93	143.61	144.84	0					46	24	2	0	0	0	0.037627	3	16815	16815;16837;16862		128.86	30.914	1	471590			61004	1524	50336	50381	66827;66828;66829	66827					0.11644077033861322
VLLSFIWL	8	Unmodified	_VLLSFIWL_					0	0	0			REV__ENSG00000187474|ENST00000339223|FPR3	REV__ENSG00000187474|ENST00000339223|FPR3	MULTI-MSMS	OvCa9_classI_Rep2	2	495.8066711425781	2	495.804771	989.59499	-1.6284	-0.00080736	4.4846	0.0022235	2.8563	0.0014161	495.8069614829561	143.45	1.4815	143.22	142.7	144.19	-0.22696					60	29	3	0	0	0	0.74679	1	14393	14393		28.254	5.2118	1	72131	+		61005	22640	50337	50382	66830	66830					0.09977610839052886
VLLSGLHADLL	11	Unmodified	_VLLSGLHADLL_					0	0	0		ENST00000285518.10_1_8:6615806-6616025:+|nuORF	ENST00000285518.10_1_8:6615806-6616025:+|nuORF	ENST00000285518.10_1_8:6615806-6616025:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.843017578125	2	575.845156	1149.67576	-1.5734	-0.00090602	-1.7064	-0.00098265	-3.2798	-0.0018887	575.8439449675558	145.55	4.7888	144.12	142.78	147.57	-1.4357					360	93	6	0	0	0	0.70518	1	14474	14474		27.882	1.1893	1	565210			61006	10075	50338	50383	66831	66831					0.10690847091291289
VLLSGVLLL	9	Unmodified	_VLLSGVLLL_					0	0	0		tr|A0A553SJY9|A0A553SJY9_NIACIIsocitratedehydrogenase[NADP]OS=NialliacirculansOX=1397GN=CEQ21_17855PE=3SV=1	tr|A0A553SJY9|A0A553SJY9_NIACIIsocitratedehydrogenase[NADP]OS=NialliacirculansOX=1397GN=CEQ21_17855PE=3SV=1	tr|A0A553SJY9|A0A553SJY9_NIACIIsocitratedehydrogenase[NADP]OS=NialliacirculansOX=1397GN=CEQ21_17855PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	463.8193054199219	2	463.817879	925.621205	1.1332	0.00052558	0.89992	0.0004174	2.0331	0.00094298	463.8181384508825	155.12	2.5278	155.12	154.47	157	0					119	49	3	0	0	0	0.14739	2	18251	18177;18251		85.359	5.4203	1	188430			61007	33555	50339	50384	66832;66833	66833					0.15541880010528075
VLLSHLSYL	9	Unmodified	_VLLSHLSYL_					0	0	0		nc|ENSG00000151702|Q01543-2|FLI1;nc|ENSG00000151702|Q01543-3|FLI1;ENSG00000151702|ENST00000527786|FLI1	nc|ENSG00000151702|Q01543-2|FLI1	nc|ENSG00000151702|Q01543-2|FLI1	MULTI-MSMS	OvCa99_classI_Rep5	1	522.8087768554688	2	522.808042	1043.60153	1.2142	0.0006348	0.66389	0.00034709	1.8781	0.00098188	522.8081793589023	111.08	1.3487	111.08	110.67	112.02	0					50	29	2	0	0	0	0.037627	1	12612	12612		128.86	41.107	1	1414600			61008	5577	50340	50385	66834	66834					0.08147503999748551
VLLSIQGVT	9	Unmodified	_VLLSIQGVT_					0	0	0			REV__tr|A0A553ST96|A0A553ST96_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_04445PE=4SV=1	REV__tr|A0A553ST96|A0A553ST96_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_04445PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	465.2851867675781	2	465.286943	928.559333	-1.6358	-0.00076114	-1.5296	-0.00071171	-3.1655	-0.0014728	465.28614320640764	142.28	1.4816	142.05	141.52	143	-0.22697					68	29	3	0	0	0	0.60342	1	14262	14262		31.53	1.2121	1	102120	+		61009	30933	50341	50386	66835	66835					0.09219528591370363
VLLSSFVFR	9	Unmodified	_VLLSSFVFR_					0	0	0		ENST00000555611.5_1_14:77576167-77579819:+|nuORF	ENST00000555611.5_1_14:77576167-77579819:+|nuORF	ENST00000555611.5_1_14:77576167-77579819:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.2930297851562	2	534.316035	1066.61752	1.8883	0.0010089	0.3871	0.00020683	2.2754	0.0012158	534.3160985549454	98.099	0.59399	98.099	97.867	98.461	0					19	13	2	0	0	0	0.027456	1	10771	10771		23.042	0	1	310500			61010	13649	50342	50387	66836	66836					0.08687210236666942
VLLSSLEVL	9	Unmodified	_VLLSSLEVL_					0	0	0			REV__ENSG00000108465|ENST00000338399|CDK5RAP3	REV__ENSG00000108465|ENST00000338399|CDK5RAP3	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.78521728515625	2	486.802426	971.590298	-0.72404	-0.00035246	1.2767	0.00062151	0.55269	0.00026905	486.8026648049431	74.014	0.34602	71.527	71.373	71.719	-2.4873					9	6	2	0	0	0	0.027462	1	3627	3627		50.025	6.3985	1	10348	+		61011	17889	50343	50388	66837	66837					0.10336681905619116
VLLSVIKNYE	10	Unmodified	_VLLSVIKNYE_					0	0	0			REV__ENSG00000179468|ENST00000350513|OR9A2	REV__ENSG00000179468|ENST00000350513|OR9A2	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3368530273438	2	589.344989	1176.67542	-2.1868	-0.0012888	-1.3084	-0.00077111	-3.4952	-0.0020599	589.3441619466173	148.26	4.549	146.82	145.53	150.08	-1.435					304	95	6	0	0	0	0.72319	1	14936	14936		27.882	7.8855	1	385010	+		61012	22125	50344	50389	66838	66838					0.09415427371459373
VLLSVMGITL	10	Unmodified	_VLLSVMGITL_					0	0	0		nc|ENSG00000100346|Q9P0X4-3|CACNA1I;nc|ENSG00000100346|Q9P0X4-2|CACNA1I;nc|ENSG00000100346|Q9P0X4-4|CACNA1I;ENSG00000100346|ENST00000402142|CACNA1I;CACNA1I|p.I1558T|1|0.18|ENSG00000100346|chr22:39672972-39672972|T/C|missense_variant	nc|ENSG00000100346|Q9P0X4-3|CACNA1I	nc|ENSG00000100346|Q9P0X4-3|CACNA1I	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.3226928710938	2	523.319928	1044.6253	3.2837	0.0017184	3.5635	0.0018649	6.8472	0.0035833	523.3216227934925	132.7	1.7146	131.2	130.95	132.66	-1.5015					74	34	3	0	0	0	0.18827	1	12830	12830		96.19	19.344	1	157630			61013	2051	50345	50390	66839	66839					0.10477601441925799
VLLSYLNET	9	Unmodified	_VLLSYLNET_					0	0	0		ENSG00000175899|ENST00000318602|A2M;ENST00000467091.1_1_12:9265282-9268445:-|nuORF;A2M|p.T119Pfs*11|1|0.05|ENSG00000175899|chr12:9112453-9112454|-/CCTCATTTTAGACAGAGGA|frameshift_variant;A2M|p.R360Dfs*12|1|0.05|ENSG00000175899|chr12:9106263-9106263|A/-|frameshift_variant	ENSG00000175899|ENST00000318602|A2M	ENSG00000175899|ENST00000318602|A2M	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.2982177734375	2	526.28714	1050.55973	0.34392	0.000181	-0.14161	-7.4528E-05	0.2023	0.00010647	526.2870591251481	112.03	1.3305	111.89	111.57	112.9	-0.13961					47	26	2	0	0	0	0.027462	1	10627	10627		17.365	0	1	146520			61014	7570	50346	50391	66840	66840					0.03646903520575506
VLLTASSVL	9	Unmodified	_VLLTASSVL_					0	0	0			REV__ENST00000287263.8_1_8:37719381-37719483:-|nuORF	REV__ENST00000287263.8_1_8:37719381-37719483:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	451.7798156738281	2	451.781493	901.548434	-1.186	-0.00053581	-2.2466	-0.001015	-3.4325	-0.0015508	451.78046832513644	137.21	1.1187	136.13	135.81	136.93	-1.0858					37	22	2	0	0	0	0.71234	1	11195	11195		13.775	0.81615	1	36642	+		61015	24142	50347	50392	66841	66841					0.09372126217101595
VLLVASAPATL	11	Unmodified	_VLLVASAPATL_					0	0	0		ENSG00000120332|ENST00000239462|TNN;TNN|p.R111Qfs*8|1|0.05|ENSG00000120332|chr1:175077749-175077750|-/AAGTCTGCCTTGGTTCA|frameshift_variant	ENSG00000120332|ENST00000239462|TNN	ENSG00000120332|ENST00000239462|TNN	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3283081054688	2	527.828975	1053.6434	1.8895	0.00099733	0.52151	0.00027527	2.411	0.0012726	527.8292639556681	117.83	0.55406	117.83	117.6	118.16	0					16	11	2	0	0	0	0.025681	1	13532	13532		34.173	1.3601	1	107590			61016	3428	50348	50393	66842	66842					0.11872059688289482
VLLVLMLSM	9	Unmodified	_VLLVLMLSM_					0	0	0		tr|A0A7D7A231|A0A7D7A231_9CLOTDUF4878domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18000PE=4SV=1	tr|A0A7D7A231|A0A7D7A231_9CLOTDUF4878domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18000PE=4SV=1	tr|A0A7D7A231|A0A7D7A231_9CLOTDUF4878domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18000PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	509.80389404296875	2	509.805599	1017.59665	-1.3099	-0.00066782	-2.4611	-0.0012547	-3.771	-0.0019225	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.69895	1	11154	11154		18.324	0	1	99460			61017	36059	50349	50394	66843	66843					0.08855160541133955
VLLVLMPPM	9	Unmodified	_VLLVLMPPM_					0	0	0		ENSG00000176555|ENST00000319988|OR4S1	ENSG00000176555|ENST00000319988|OR4S1	ENSG00000176555|ENST00000319988|OR4S1	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.8267517089844	2	506.800317	1011.58608	-0.68648	-0.00034791	4.4496	0.0022551	3.7631	0.0019071	507.30335365917597	77.386	0.67841	75.597	75.364	76.042	-1.7894					13	12	2	0	0	0	0.027462	1	6407	6407		21.702	0	1	9529.8			61018	7614	50350	50395	66844	66844					0.08075177886712481
VLLYSMNSQP	10	Unmodified	_VLLYSMNSQP_					0	0	0			REV__ENSG00000280165|ENST00000409204|PCDH20	REV__ENSG00000280165|ENST00000409204|PCDH20	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.2942504882812	2	576.291899	1150.56925	-0.33935	-0.00019556	4.0436	0.0023303	3.7043	0.0021348	576.2940717581542	75.364	0.33946	72.133	72.012	72.351	-3.2308					9	6	2	0	0	0	0.026635	1	5937	5937		24.519	0	1	109550	+		61019	23658	50351	50396	66845	66845					-1.6514655499122455E-05
VLLYVRKES	9	Unmodified	_VLLYVRKES_					0	0	0		nc|ENSG00000134317|Q9NZI5-2|GRHL1;ENSG00000134317|ENST00000324907|GRHL1	nc|ENSG00000134317|Q9NZI5-2|GRHL1	nc|ENSG00000134317|Q9NZI5-2|GRHL1	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8291015625	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.6959	1	14414	14414		19.36	0.25645	1	245610			61020	4280	50352	50397	66846	66846					0.10094577919812764
VLMAAVILA	9	Unmodified	_VLMAAVILA_					0	0	0			REV__tr|A0A553SIR1|A0A553SIR1_NIACINupC/NupGfamilynucleosideCNTtransporterOS=NialliacirculansOX=1397GN=CEQ21_15305PE=3SV=1	REV__tr|A0A553SIR1|A0A553SIR1_NIACINupC/NupGfamilynucleosideCNTtransporterOS=NialliacirculansOX=1397GN=CEQ21_15305PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.7626647949219	2	450.782982	899.55141	0.28609	0.00012896	4.1934	0.0018903	4.4795	0.0020193	450.7847439468086	51.325	0.25377	51.325	51.207	51.461	0					7	5	2	0	0	0	0.027462	1	3946	3946		39.021	9.18	1	59168	+		61021	29919	50353	50398	66847	66847					0.09761678070242397
VLMDRLPSL	9	Unmodified	_VLMDRLPSL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	OvCa99_classI_Rep5	1	522.3006591796875	2	522.299527	1042.5845	1.5083	0.0007878	0.6577	0.00034351	2.166	0.0011313	522.2997389978688	112.74	1.0604	112.74	112.39	113.45	0					60	23	4	0	0	0	0.066102	1	12830	12830		109.48	35.223	1	2286200			61022	4962	50354	50399	66848	66848					0.06491260122288622
VLMDRLPSL	9	Unmodified	_VLMDRLPSL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	522.299527	1042.5845	0.98936	0.00051674	-0.68375	-0.00035712	0.30561	0.00015962	522.2989564185945	112.78	1.5795	112.66	111.83	113.41	-0.12174	0.058926	-0.00086505	NaN	109.48	41	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49315			61023	4962	50354	50399							0.06491260122288622
VLMDRLPSL	9	Unmodified	_VLMDRLPSL_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	522.299527	1042.5845	0.70985	0.00037075	-0.30402	-0.00015879	0.40583	0.00021196	522.2989360982714	113.48	1.2339	112.41	112.15	113.38	-1.0753	-0.1948	-0.00046838	NaN	109.48	34	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63054			61024	4962	50354	50399							0.06491260122288622
VLMGLRNL	8	Unmodified	_VLMGLRNL_					0	0	0		tr|A0A7D6ZIS8|A0A7D6ZIS8_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08270PE=4SV=1	tr|A0A7D6ZIS8|A0A7D6ZIS8_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08270PE=4SV=1	tr|A0A7D6ZIS8|A0A7D6ZIS8_9CLOTMarRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08270PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	458.275146484375	2	458.275855	914.537157	2.4811	0.001137	-3.5959	-0.0016479	-1.1148	-0.0005109	458.2740205112957	88.897	0.77698	88.897	88.342	89.119	0					27	18	3	0	0	0	0.68312	1	9469	9469		46.766	0.81448	1	1061300			61025	35625	50355	50400	66849	66849					0.07647025641961136
VLMGVIAWIA	10	Unmodified	_VLMGVIAWIA_					0	0	0			REV__tr|A0A7D6VT06|A0A7D6VT06_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_08815PE=3SV=1	REV__tr|A0A7D6VT06|A0A7D6VT06_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_08815PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.8330688476562	2	536.814813	1071.61507	-0.95868	-0.00051463	2.8658	0.0015384	1.9072	0.0010238	536.8162652016066	93.556	1.4814	92.388	92.105	93.586	-1.168					53	28	4	0	0	0	0.026839	1	8329	8329		35.201	6.0512	1	141840	+		61026	31562	50356	50401	66850	66850					0.082130385073242
VLMGVIAWIA	10	Unmodified	_VLMGVIAWIA_					0	0	0			REV__tr|A0A7D6VT06|A0A7D6VT06_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_08815PE=3SV=1	REV__tr|A0A7D6VT06|A0A7D6VT06_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_08815PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	536.814813	1071.61507	0.46426	0.00024922	1.3235	0.0007105	1.7878	0.00095972	536.8155386501995	94.327	1.6606	92.431	92.102	93.763	-1.8956	-0.013853	-0.0013697	NaN	44.531	64	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200620	+		61027	31562	50356	50401							0.082130385073242
VLMHILLFQ	9	Unmodified	_VLMHILLFQ_					0	0	0		ENST00000461125.1_1_3:179304300-179305795:+|nuORF	ENST00000461125.1_1_3:179304300-179305795:+|nuORF	ENST00000461125.1_1_3:179304300-179305795:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.3296508789062	2	557.328088	1112.64162	-0.031635	-1.7631E-05	1.3769	0.00076741	1.3453	0.00074978	557.3287360893569	82.001	2.0398	79.318	78.914	80.954	-2.6829					73	41	4	0	0	0	0.39645	1	6754	6754		52.299	4.6418	1	770810			61028	12170	50357	50402	66851	66851					0.08980727398670751
VLMKRTVNL	9	Unmodified	_VLMKRTVNL_					0	0	0		ENST00000432901.3_1_20:18123720-18123792:+|nuORF	ENST00000432901.3_1_20:18123720-18123792:+|nuORF	ENST00000432901.3_1_20:18123720-18123792:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3077392578125	2	537.328619	1072.64269	1.3073	0.00070245	-1.2909	-0.00069363	0.016418	8.8219E-06	537.3273705159112	111.66	0.45382	111.66	111.38	111.83	0					15	9	2	0	0	0	0.027247	1	12714	12714		79.713	0	1	98547			61029	11818	50358	50403	66852	66852					0.10926941767570497
VLMLQEPLL	9	Unmodified	_VLMLQEPLL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OvCa99_classI_Rep5	1	528.3151245117188	2	528.312103	1054.60965	1.2923	0.00068273	-0.8031	-0.00042429	0.48918	0.00025844	528.3113620689925	149.28	0.63593	149.28	149.06	149.7	0					23	12	3	0	0	0	0.22621	1	17478	17478		71.877	13.648	1	117730			61030	6376	50359	50404	66853	66853					0.08453314924872757
VLMPTVLQALP	11	Unmodified	_VLMPTVLQALP_					0	0	0		nc|ENSG00000111783|Q33E94-4|RFX4;ENST00000536688.5_1_12:106995054-107126892:+|nuORF;nc|ENSG00000111783|Q33E94-3|RFX4;ENSG00000111783|ENST00000392842|RFX4;nc|ENSG00000111783|Q33E94-2|RFX4	nc|ENSG00000111783|Q33E94-4|RFX4	nc|ENSG00000111783|Q33E94-4|RFX4	MULTI-SECPEP	OvCa9_classI_Rep2	2	591.3723754882812	2	591.35176	1180.68897	-0.24447	-0.00014457	-2.0881	-0.0012348	-2.3326	-0.0013794	591.3513834092113	72.438	0.26051	69.935	69.803	70.063	-2.5036					5	4	2	0	0	0	0.025265	1	5865	5865		42.864	11.334	1	12343			61031	2851	50360	50405	66854	66854					0.10584961878998911
VLMPTVLQALP	11	Unmodified	_VLMPTVLQALP_					0	0	0		nc|ENSG00000111783|Q33E94-4|RFX4;ENST00000536688.5_1_12:106995054-107126892:+|nuORF;nc|ENSG00000111783|Q33E94-3|RFX4;ENSG00000111783|ENST00000392842|RFX4;nc|ENSG00000111783|Q33E94-2|RFX4	nc|ENSG00000111783|Q33E94-4|RFX4	nc|ENSG00000111783|Q33E94-4|RFX4	MULTI-SECPEP	OvCa9_classI_Rep2	2	591.3726196289062	2	591.35176	1180.68897	-0.40431	-0.00023909	3.7131	0.0021957	3.3088	0.0019567	591.3539030789386	72.776	0.83425	70.376	70.167	71.001	-2.3999					35	15	4	0	0	0	0.025257	1	5883	5883		52.937	3.4952	1	38359			61032	2851	50360	50405	66855	66855					0.10584961878998911
VLMPWIHEL	9	Unmodified	_VLMPWIHEL_					0	0	0		NLRP1|p.M686Rfs*73|1|0.05|ENSG00000091592|chr17:5558638-5558639|CA/-|frameshift_variant;ENST00000571307.1_1_17:5433304-5487319:-|nuORF;nc|ENSG00000091592|Q9C000-5|NLRP1;nc|ENSG00000091592|Q9C000-3|NLRP1;nc|ENSG00000091592|Q9C000-2|NLRP1;nc|ENSG00000091592|Q9C000-4|NLRP1;ENSG00000091592|ENST00000572272|NLRP1	NLRP1|p.M686Rfs*73|1|0.05|ENSG00000091592|chr17:5558638-5558639|CA/-|frameshift_variant	NLRP1|p.M686Rfs*73|1|0.05|ENSG00000091592|chr17:5558638-5558639|CA/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	569.3106079101562	2	569.309895	1136.60524	0.81678	0.000465	1.5453	0.00087977	2.3621	0.0013448	569.310553719728	132.23	0.80034	132.23	131.85	132.65	0					50	16	4	0	0	0	0.064607	2	15369	15369;15392		110.34	41.55	1	1234700			61033	1873	50361	50406	66856;66857	66856					0.042398505019491495
VLMRYIII	8	Unmodified	_VLMRYIII_					0	0	0			REV__tr|A0A7D6ZFM1|A0A7D6ZFM1_9CLOTRodshape-determiningproteinRodAOS=ClostridiumintestinaleOX=36845GN=rodAPE=4SV=1	REV__tr|A0A7D6ZFM1|A0A7D6ZFM1_9CLOTRodshape-determiningproteinRodAOS=ClostridiumintestinaleOX=36845GN=rodAPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.2678527832031	2	510.817356	1019.62016	-1.8138	-0.00092652	-1.6475	-0.00084158	-3.4613	-0.0017681	510.81621579192915	88.803	1.2511	86.2	85.377	86.628	-2.6027					61	24	4	0	0	0	0.028476	1	7641	7641		26.796	0	1	57807	+		61034	31975	50362	50407	66858	66858					0.11113342369969814
VLMTEDIKL	9	Unmodified	_VLMTEDIKL_					0	0	0		ENST00000442406.5_1_3:184038690-184052693:+|nuORF;nc|ENSG00000114867|Q04637-6|EIF4G1;nc|ENSG00000114867|Q04637-7|EIF4G1;nc|ENSG00000114867|Q04637-5|EIF4G1;nc|ENSG00000114867|Q04637-4|EIF4G1;nc|ENSG00000114867|Q04637-3|EIF4G1;ENSG00000114867|ENST00000346169|EIF4G1;nc|ENSG00000114867|Q04637-8|EIF4G1;nc|ENSG00000114867|Q04637-9|EIF4G1;EIF4G1|p.E1239Rfs*4|1|0.06|ENSG00000114867|chr3:184327639-184327639|G/-|frameshift_variant	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	ENST00000442406.5_1_3:184038690-184052693:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	531.2992553710938	2	531.299193	1060.58383	2.2791	0.0012109	-1.2212	-0.00064881	1.0579	0.00056205	531.2985024487831	106.11	1.1009	106.11	105.75	106.85	0					87	24	5	0	0	0	0.0086488	3	11917	11917;11938;11964		176.09	64.439	1	8127900			61035	3048	50363	50408	66859;66860;66861	66859					0.05596420682581993
VLMTIMVVL	9	Unmodified	_VLMTIMVVL_					0	0	0			REV__ENSG00000174502|ENST00000367135|SLC26A9	REV__ENSG00000174502|ENST00000367135|SLC26A9	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8058776855469	2	509.805599	1017.59665	0.17054	8.6941E-05	-0.20871	-0.0001064	-0.038176	-1.9462E-05	509.80544933708404	111.24	1.4787	111.1	110.78	112.26	-0.13961					90	29	5	0	0	0	0.39645	1	10479	10479		52.299	7.922	1	1582600	+		61036	21838	50364	50409	66862	66862					0.08855160541122586
VLMTIVILN	9	Unmodified	_VLMTIVILN_					0	0	0			REV__PEAK1|p.N564Tfs*75|1|0.06|ENSG00000173517|chr15:77180241-77180241|C/-|frameshift_variant	REV__PEAK1|p.N564Tfs*75|1|0.06|ENSG00000173517|chr15:77180241-77180241|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.81353759765625	2	508.314646	1014.61474	-0.075008	-3.8128E-05	-0.8058	-0.0004096	-0.88081	-0.00044773	508.314163408211	96.272	0.6473	95.244	94.813	95.461	-1.0281					37	12	4	0	0	0	0.027164	1	8697	8697		79.451	8.1553	1	622730	+		61037	29286	50365	50410	66863	66863					0.10801618787479583
VLMVLTDKL	9	Oxidation (M)	_VLM(Oxidation (M))VLTDKL_		VLM(1)VLTDKL		VLM(94)VLTDKL	0	0	1			REV__ENST00000481915.5_1_3:32574447-32611850:-|nuORF	REV__ENST00000481915.5_1_3:32574447-32611850:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	524.3094482421875	2	524.309561	1046.60457	-1.067	-0.00055945	-3.0292	-0.0015883	-4.0963	-0.0021477	524.3078003096332	117.55	1.8829	116.51	116.04	117.93	-1.0324					72	37	5	0	0	0	0.11171	1	8830	8830		94.006	9.0909	1	1005800	+		61038	19922	50366	50411	66864	66864		460			0.08313011062227815
VLMVLVVFI	9	Unmodified	_VLMVLVVFI_					0	0	0		nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	nc|ENSG00000140199|Q9UHW9-6|SLC12A6	nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	517.816162109375	2	516.829932	1031.64531	0.19205	9.9259E-05	3.2351	0.001672	3.4272	0.0017713	516.8313770715205	115.04	0.96246	113.64	113.3	114.27	-1.3977					41	18	3	0	0	0	0.027462	1	10726	10726		29.842	5.6388	1	94613			61039	4827	50367	50412	66865	66865					0.13075397172519843
VLMVLVVFI	9	Unmodified	_VLMVLVVFI_					0	0	0		nc|ENSG00000140199|Q9UHW9-6|SLC12A6;nc|ENSG00000140199|Q9UHW9-5|SLC12A6;nc|ENSG00000140199|Q9UHW9-2|SLC12A6;nc|ENSG00000140199|Q9UHW9-3|SLC12A6;nc|ENSG00000140199|Q9UHW9-4|SLC12A6;ENSG00000140199|ENST00000354181|SLC12A6	nc|ENSG00000140199|Q9UHW9-6|SLC12A6	nc|ENSG00000140199|Q9UHW9-6|SLC12A6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	516.829932	1031.64531	0.54465	0.00028149	2.8473	0.0014716	3.392	0.0017531	516.8311689365156	113.66	1.0371	113.55	113.22	114.26	-0.11777	-0.065207	-0.00017603	NaN	39.021	40	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63825			61040	4827	50367	50412							0.13075397172519843
VLNAAKRNV	9	Unmodified	_VLNAAKRNV_					0	0	0		nc|ENSG00000118200|Q08AD1-2|CAMSAP2;ENSG00000118200|ENST00000358823|CAMSAP2;nc|ENSG00000118200|Q08AD1|CAMSAP2	nc|ENSG00000118200|Q08AD1-2|CAMSAP2	nc|ENSG00000118200|Q08AD1-2|CAMSAP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.8022155761719	2	492.801083	983.587613	0.31013	0.00015283	-0.88334	-0.00043531	-0.57321	-0.00028248	492.8006535263743	57.337	1.4719	53.992	53.527	54.999	-3.3449					50	28	2	0	0	0	0.38529	1	3728	3728		53.351	5.4358	1	1133100			61041	3294	50368	50413	66866	66866					0.09516271291317935
VLNARLALSLD	11	Unmodified	_VLNARLALSLD_					0	0	0			REV__ENST00000534988.1_1_11:63996737-63997202:-|nuORF	REV__ENST00000534988.1_1_11:63996737-63997202:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	592.8244018554688	2	592.853512	1183.69247	-0.68347	-0.0004052	-0.60987	-0.00036157	-1.2933	-0.00076676	592.8544447845092	95.321	0.34592	94.293	94.071	94.417	-1.0281					8	6	2	0	0	0	0.02557	1	8577	8577		39.253	17.293	1	16480	+		61042	27280	50369	50414	66867	66867					0.10797347977222671
VLNASVTSPLL	11	Unmodified	_VLNASVTSPLL_					0	0	0		ENSG00000150337|ENST00000369168|FCGR1A;ENST00000472543.1_1:120928502-120934612:-|nuORF;nc|ENSG00000291135|Q92637-2|FCGR1BP;nc|ENSG00000150337|P12314-2|FCGR1A	ENSG00000150337|ENST00000369168|FCGR1A	ENSG00000150337|ENST00000369168|FCGR1A	MULTI-MSMS	OvCa9_classI_Rep3	3	557.3291015625	2	557.329339	1112.64412	-0.56024	-0.00031224	-2.874	-0.0016017	-3.4342	-0.001914	557.3293455738343	109.32	1.5759	108.18	107.72	109.29	-1.1444					86	29	5	0	0	0	0.68021	1	7836	7836		36.447	0.12911	1	360550			61043	5504	50370	50415	66868	66868					0.09230854337351957
VLNDDVPSR	9	Unmodified	_VLNDDVPSR_					0	0	0		ENST00000209929.9_1_1:171154426-171178089:+|nuORF;ENSG00000094963|ENST00000209929|FMO2	ENST00000209929.9_1_1:171154426-171178089:+|nuORF	ENST00000209929.9_1_1:171154426-171178089:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7656555175781	2	507.764363	1013.51417	3.7041	0.0018808	0.31932	0.00016214	4.0235	0.002043	507.76435878537296	132.17	1.6916	130.67	129.94	131.63	-1.5015					93	33	4	0	0	0	0.5811	1	12710	12710		34.173	7.4796	1	152800			61044	1916	50371	50416	66869	66869					0.007956780581935163
VLNFRTGIV	9	Unmodified	_VLNFRTGIV_					0	0	0		ENSG00000138622|ENST00000261917|HCN4;HCN4|p.E321V|1|0.19|ENSG00000138622|chr15:73343632-73343632|T/A|missense_variant;ENST00000467204.1_1_1:155252337-155256975:+|nuORF;ENST00000496230.5_1_1:155247534-155253965:+|nuORF;ENSG00000143630|ENST00000368358|HCN3;ENSG00000099822|ENST00000251287|HCN2	ENSG00000138622|ENST00000261917|HCN4	ENSG00000138622|ENST00000261917|HCN4	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8052673339844	2	509.805834	1017.59712	0.17054	8.6941E-05	-0.6687	-0.00034091	-0.49816	-0.00025397	509.80544933708404	111.24	1.4787	111.1	110.78	112.26	-0.13961					90	29	5	0	0	0	0.21395	1	10477	10477		73.975	10.668	1	1582600			61045	4698	50372	50417	66870	66870					0.08902039576832976
VLNFRTGIV	9	Unmodified	_VLNFRTGIV_					0	0	0		ENSG00000138622|ENST00000261917|HCN4;HCN4|p.E321V|1|0.19|ENSG00000138622|chr15:73343632-73343632|T/A|missense_variant;ENST00000467204.1_1_1:155252337-155256975:+|nuORF;ENST00000496230.5_1_1:155247534-155253965:+|nuORF;ENSG00000143630|ENST00000368358|HCN3;ENSG00000099822|ENST00000251287|HCN2	ENSG00000138622|ENST00000261917|HCN4	ENSG00000138622|ENST00000261917|HCN4	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.8052673339844	2	509.805834	1017.59712	0.057438	2.9282E-05	-0.93178	-0.00047503	-0.87434	-0.00044574	509.80536418182953	112.63	1.3865	111.12	110.79	112.18	-1.5111					84	27	4	0	0	0	0.29717	1	10430	10430		63.306	10.37	1	1928800			61046	4698	50372	50417	66871	66871					0.08902039576832976
VLNGNPLLH	9	Unmodified	_VLNGNPLLH_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;ENST00000584444.5_1_17:18156710-18162004:-|nuORF;ENST00000478416.1_1_17:18157237-18162004:-|nuORF	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.78338623046875	2	488.782359	975.550165	1.4584	0.00071282	1.3694	0.00066932	2.8277	0.0013821	488.7817171433016	85.055	1.6236	82.409	82.12	83.743	-2.6463					67	32	4	0	0	0	0.25214	1	7148	7148		68.485	8.0811	1	377250			61047	7708	50373	50418	66872	66872					0.06141180025713311
VLNGNPLLH	9	Unmodified	_VLNGNPLLH_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;ENST00000584444.5_1_17:18156710-18162004:-|nuORF;ENST00000478416.1_1_17:18157237-18162004:-|nuORF	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MATCH	OvCa9_classI_Rep2	2		2	488.782359	975.550165	-0.44385	-0.00021695	3.1092	0.0015197	2.6653	0.0013028	488.78243837163285	83.966	1.4758	82.42	81.974	83.449	-1.5462	0.082199	0.00039831	NaN	68.485	68	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161250			61048	7708	50373	50418							0.06141180025713311
VLNGNPLLH	9	Unmodified	_VLNGNPLLH_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;ENST00000584444.5_1_17:18156710-18162004:-|nuORF;ENST00000478416.1_1_17:18157237-18162004:-|nuORF	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MATCH	OvCa9_classI_Rep3	3		2	488.782359	975.550165	-1.4639	-0.00071554	3.4656	0.0016939	2.0017	0.00097839	488.78275809133254	84.445	1.6598	82.184	81.836	83.495	-2.261	-0.1538	0.00074676	NaN	68.485	77	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	373210			61049	7708	50373	50418							0.06141180025713311
VLNKKIGDK	9	Unmodified	_VLNKKIGDK_					0	0	0		tr|A0A553SQ80|A0A553SQ80_NIACIPyrimidine-nucleosidephosphorylaseOS=NialliacirculansOX=1397GN=CEQ21_19760PE=3SV=1	tr|A0A553SQ80|A0A553SQ80_NIACIPyrimidine-nucleosidephosphorylaseOS=NialliacirculansOX=1397GN=CEQ21_19760PE=3SV=1	tr|A0A553SQ80|A0A553SQ80_NIACIPyrimidine-nucleosidephosphorylaseOS=NialliacirculansOX=1397GN=CEQ21_19760PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.6207275390625	2	507.818941	1013.62333	0.25367	0.00012882	-0.27501	-0.00013965	-0.021332	-1.0833E-05	507.818704070724	57.779	0.54457	57.779	57.609	58.153	0					18	12	2	0	0	0	0.027462	1	4870	4870		14.137	0	1	87138			61050	34131	50374	50419	66873	66873					0.1170630874833023
VLNKLQTYI	9	Unmodified	_VLNKLQTYI_					0	0	0			REV__ENSG00000122484|ENST00000610020|RPAP2	REV__ENSG00000122484|ENST00000610020|RPAP2	MULTI-MSMS	OvCa9_classI_Rep2	2	546.3271484375	2	546.326599	1090.63865	-0.59086	-0.0003228	-0.12835	-7.012E-05	-0.71921	-0.00039292	546.32648005172	104.57	2.5343	103.99	103.67	106.21	-0.57639					97	50	4	0	0	0	0.33652	1	9702	9702		58.782	0	1	511310	+		61051	18601	50375	50420	66874	66874					0.0969517554549384
VLNLDEPAF	9	Unmodified	_VLNLDEPAF_					0	0	0			REV__tr|A0A553SHL0|A0A553SHL0_NIACIDNAreplicationandrepairproteinRecFOS=NialliacirculansOX=1397GN=recFPE=3SV=1	REV__tr|A0A553SHL0|A0A553SHL0_NIACIDNAreplicationandrepairproteinRecFOS=NialliacirculansOX=1397GN=recFPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.7665100097656	2	509.266207	1016.51786	0.73288	0.00037323	3.2739	0.0016673	4.0067	0.0020405	509.267770825125	36.482	1.1463	33.616	33.122	34.268	-2.866					47	22	3	0	0	0	0.027462	1	1280	1280		29.15	12.676	1	94801	+		61052	29813	50376	50421	66875	66875					0.01026347832043939
VLNLIFDSEW	10	Unmodified	_VLNLIFDSEW_					0	0	0		nc|ENSG00000138400|Q5I0G3-2|MDH1B;ENSG00000138400|ENST00000374412|MDH1B	nc|ENSG00000138400|Q5I0G3-2|MDH1B	nc|ENSG00000138400|Q5I0G3-2|MDH1B	MULTI-MSMS	OvCa9_classI_Rep3	3	618.3202514648438	2	618.318971	1234.62339	2.5456	0.001574	0.55221	0.00034144	3.0978	0.0019154	618.31904891024	124.24	1.3023	123.2	122.87	124.17	-1.0377					63	24	4	0	0	0	0.72319	1	9614	9614		27.882	0.83493	1	134840			61053	4685	50377	50422	66876	66876					0.015462639576753645
VLNLLKDLQK	10	Unmodified	_VLNLLKDLQK_					0	0	0		tr|A0A553SPV6|A0A553SPV6_NIACIDipeptideABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10855PE=3SV=1	tr|A0A553SPV6|A0A553SPV6_NIACIDipeptideABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10855PE=3SV=1	tr|A0A553SPV6|A0A553SPV6_NIACIDipeptideABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_10855PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	592.3727416992188	2	592.374081	1182.73361	-4.4138	-0.0026146	1.0011	0.00059302	-3.4127	-0.0020216	592.3745667748314	155.34	1.3333	153.85	153.54	154.88	-1.4911					97	38	4	0	0	0	0.6349	1	15391	15391		37.812	6.2817	1	262760			61054	34092	50378	50423	66877	66877					0.149551090166824
VLNNKRPD	8	Unmodified	_VLNNKRPD_					0	0	0			REV__nc|ENSG00000142687|Q8IZA0-3|KIAA0319L	REV__nc|ENSG00000142687|Q8IZA0-3|KIAA0319L	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.2735595703125	2	478.269616	954.524678	-0.43016	-0.00020573	-3.0558	-0.0014615	-3.486	-0.0016672	478.2679666577027	77.805	1.5378	76.016	75.364	76.901	-1.7894					71	29	3	0	0	0	0.028476	1	6504	6504		35.618	13.658	1	169680	+		61055	19803	50379	50424	66878	66878					0.04559705503265832
VLNPRLFL	8	Unmodified	_VLNPRLFL_					0	0	0			REV__ENST00000254853.9_1_17:4938496-4938706:-|nuORF	REV__ENST00000254853.9_1_17:4938496-4938706:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	486.3052978515625	2	486.30547	970.596387	-1.0237	-0.00049782	0.68907	0.0003351	-0.3346	-0.00016272	486.3057082440577	120.4	1.6293	120.23	119.94	121.57	-0.17138					88	32	4	0	0	0	0.69415	1	11604	11604		44.531	16.277	1	594410	+		61056	23882	50380	50425	66879	66879					0.10991244927777188
VLNPRLFLVF	10	Unmodified	_VLNPRLFLVF_					0	0	0			REV__ENST00000254853.9_1_17:4938496-4938706:-|nuORF	REV__ENST00000254853.9_1_17:4938496-4938706:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	609.376220703125	2	609.373884	1216.73321	0.56551	0.00034461	-0.78329	-0.00047732	-0.21778	-0.00013271	609.3731861911076	164.45	1.5748	164.45	163.72	165.3	0					107	58	2	0	0	0	0.85907	1	19179	19179		11.511	1.2458	1	34749	+		61057	23882	50381	50426	66880	66880					0.13351734087473233
VLNQAVRLTEP	11	Unmodified	_VLNQAVRLTEP_					0	0	0			REV__nc|ENSG00000136824|O95347-2|SMC2	REV__nc|ENSG00000136824|O95347-2|SMC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	620.8336791992188	2	620.356419	1238.69829	-1.1731	-0.00072772	-0.63232	-0.00039226	-1.8054	-0.00112	620.8566750457661	100.53	0.72507	98.262	97.825	98.55	-2.2665					24	13	3	0	0	0	0.025332	1	8972	8972		41.427	0	1	25057	+		61058	19406	50382	50427	66881	66881					0.08848446488900663
VLNRKGPTK	9	Unmodified	_VLNRKGPTK_					0	0	0		ENSG00000066629|ENST00000262233|EML1;nc|ENSG00000066629|O00423-3|EML1;ENST00000556758.1_1_14:100317215-100349650:+|nuORF;EML1|p.D357Efs*15|1|0.06|ENSG00000066629|chr14:99907699-99907700|-/G|frameshift_variant	ENSG00000066629|ENST00000262233|EML1	ENSG00000066629|ENST00000262233|EML1	MULTI-MSMS	OvCa9_classI_Rep2	2	506.81683349609375	2	506.816733	1011.61891	2.1164	0.0010726	-2.3647	-0.0011984	-0.24822	-0.0001258	506.8154810941395	27.373	0.47915	24.664	24.515	24.994	-2.7097					16	10	2	0	0	0	0.69123	1	463	463		20.947	1.8434	1	26185			61059	1355	50383	50428	66882	66882					0.1135684432541666
VLNRSLLSGS	10	Unmodified	_VLNRSLLSGS_					0	0	0		ENST00000474227.1_1_1:53685810-53685894:-|nuORF	ENST00000474227.1_1_1:53685810-53685894:-|nuORF	ENST00000474227.1_1_1:53685810-53685894:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3032836914062	2	523.303655	1044.59276	-0.69596	-0.0003642	0.54848	0.00028702	-0.14748	-7.7179E-05	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.72319	1	13986	13986		27.882	0	1	130240			61060	12428	50384	50429	66883	66883					0.07224530363282611
VLNRVRDI	8	Unmodified	_VLNRVRDI_					0	0	0		ENST00000037869.7_1_2:70524190-70524229:-|nuORF	ENST00000037869.7_1_2:70524190-70524229:-|nuORF	ENST00000037869.7_1_2:70524190-70524229:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	492.801025390625	2	492.801083	983.587613	-0.24793	-0.00012218	-0.089465	-4.4088E-05	-0.33739	-0.00016627	492.8009419082902	56.6	1.5858	53.796	53.175	54.761	-2.804					103	31	4	0	0	0	0.65582	1	4006	4006		52.299	0	1	477380			61061	9630	50385	50430	66884	66884					0.09516271291306566
VLNTIQTLL	9	Unmodified	_VLNTIQTLL_					0	0	0			REV__nc|ENSG00000107798|P38571-2|LIPA	REV__nc|ENSG00000107798|P38571-2|LIPA	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.812744140625	2	507.813325	1013.6121	-3.7776	-0.0019183	3.6163	0.0018364	-0.16133	-8.1927E-05	507.8150097852563	152.29	1.1068	150.85	150.6	151.71	-1.435					49	23	3	0	0	0	0.63422	1	15099	15099		27.882	0	1	90122	+		61062	17858	50386	50431	66885	66885					0.10583486654184071
VLNVSFEKL	9	Unmodified	_VLNVSFEKL_					0	0	0		PPP1R3A|p.H470Tfs*2|1|0.45|ENSG00000154415|chr7:113879684-113879685|-/T|frameshift_variant;ENSG00000154415|ENST00000284601|PPP1R3A	PPP1R3A|p.H470Tfs*2|1|0.45|ENSG00000154415|chr7:113879684-113879685|-/T|frameshift_variant	PPP1R3A|p.H470Tfs*2|1|0.45|ENSG00000154415|chr7:113879684-113879685|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	524.8073120117188	2	524.8055	1047.59645	-0.80273	-0.00042128	-1.7483	-0.0009175	-2.551	-0.0013388	524.8041196356187	117.99	1.0403	116.96	116.79	117.83	-1.0324					61	20	4	0	0	0	0.27001	2	8880	8880;8911		66.429	9.7082	1	347220			61063	5734	50387	50432	66886;66887	66886					0.07455200137133033
VLPAGHTLAL	10	Unmodified	_VLPAGHTLAL_					0	0	0			REV__nc|ENSG00000166391|Q3SYC2-2|MOGAT2	REV__nc|ENSG00000166391|Q3SYC2-2|MOGAT2	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.29998779296875	2	496.300384	990.586216	-0.20996	-0.0001042	-0.013117	-6.5099E-06	-0.22308	-0.00011071	496.30023015612176	123.47	1.2954	122.1	121.8	123.1	-1.3666					64	25	3	0	0	0	0.50656	1	11694	11694		53.351	5.4358	1	220800	+		61064	21186	50388	50433	66888	66888					0.0905463720255284
VLPAPDLI	8	Unmodified	_VLPAPDLI_					0	0	0		ENST00000373366.2_1_1:35247033-35247153:+|nuORF	ENST00000373366.2_1_1:35247033-35247153:+|nuORF	ENST00000373366.2_1_1:35247033-35247153:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	419.256591796875	2	419.257654	836.500755	-0.30894	-0.00012953	-2.6366	-0.0011054	-2.9456	-0.001235	419.2564271002057	38.885	1.3396	35.959	35.601	36.941	-2.9264					48	26	2	0	0	0	0.72134	1	1547	1547		39.021	0	1	347090			61065	11008	50389	50434	66889	66889					0.0759647201689404
VLPAPDLI	8	Unmodified	_VLPAPDLI_					0	0	0		ENST00000373366.2_1_1:35247033-35247153:+|nuORF	ENST00000373366.2_1_1:35247033-35247153:+|nuORF	ENST00000373366.2_1_1:35247033-35247153:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	419.257654	836.500755	-0.8569	-0.00035926	-1.9998	-0.00083844	-2.8567	-0.0011977	419.2566953098637	38.747	0.84102	36.038	35.717	36.558	-2.7097	0.039484	0.00033769	NaN	39.021	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89123			61066	11008	50389	50434							0.0759647201689404
VLPDASHKMLV	11	Unmodified	_VLPDASHKMLV_					0	0	0		nc|ENSG00000138347|Q86TC9-2|MYPN;ENSG00000138347|ENST00000358913|MYPN	nc|ENSG00000138347|Q86TC9-2|MYPN	nc|ENSG00000138347|Q86TC9-2|MYPN	MULTI-SECPEP	OvCa99_classI_Rep5	1	605.4015502929688	2	605.336641	1208.65873	1.643	0.00099455	-3.4622	-0.0020958	-1.8193	-0.0011013	605.8379243797538	149.25	0.24347	149.25	149.16	149.4	0					6	4	2	0	0	0	0.025306	1	17483	17483		30.569	0.25114	1	14580			61067	4676	50390	50435	66890	66890					0.06274603213819319
VLPEEAHYF	9	Unmodified	_VLPEEAHYF_					0	0	0		nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1	nc|ENSG00000060237|Q9H4A3-5|WNK1	nc|ENSG00000060237|Q9H4A3-5|WNK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.770751953125	2	552.771657	1103.52876	4.1379	0.0022873	-4.0559	-0.002242	0.082032	4.5345E-05	552.769306948834	131.85	0.62689	130.35	130.17	130.8	-1.5015					19	11	2	0	0	0	0.30002	1	12692	12692		62.978	2.0065	1	41015			61068	14880	50391	50436	66891	66891					-0.018862497936879663
VLPEEAHYF	9	Unmodified	_VLPEEAHYF_					0	0	0		nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1	nc|ENSG00000060237|Q9H4A3-5|WNK1	nc|ENSG00000060237|Q9H4A3-5|WNK1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	552.771657	1103.52876	1.4702	0.00081269	-1.5524	-0.00085813	-0.082204	-4.544E-05	552.7708283511016	131.01	0.79672	130.79	130.45	131.25	-0.22696	0.22653	0.0001821	NaN	62.978	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26443			61069	14880	50391	50436							-0.018862497936879663
VLPEEAHYF	9	Unmodified	_VLPEEAHYF_					0	0	0		nc|ENSG00000060237|Q9H4A3-5|WNK1;nc|ENSG00000060237|Q9H4A3-6|WNK1;nc|ENSG00000060237|Q9H4A3-7|WNK1	nc|ENSG00000060237|Q9H4A3-5|WNK1	nc|ENSG00000060237|Q9H4A3-5|WNK1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	552.771657	1103.52876	-0.37216	-0.00020572	-0.10447	-5.775E-05	-0.47664	-0.00026347	552.771533260769	131.67	0.64548	130.54	130.19	130.84	-1.1249	-0.017063	0.0017829	NaN	62.978	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32315			61070	14880	50391	50436							-0.018862497936879663
VLPEPVLR	8	Unmodified	_VLPEPVLR_					0	0	0			REV__nc|ENSG00000135502|Q8NG04-2|SLC26A10P	REV__nc|ENSG00000135502|Q8NG04-2|SLC26A10P	MULTI-MSMS	OvCa99_classI_Rep5	1	461.791259765625	2	461.789653	921.564752	2.322	0.0010723	0.2053	9.4806E-05	2.5273	0.0011671	461.78967546256064	96.596	1.3578	96.596	96.296	97.654	0					63	31	4	0	0	0	0.35163	1	10603	10603		97.473	0	1	1962400	+		61071	28869	50392	50437	66892	66892					0.10083252173842538
VLPERKKTK	9	Unmodified	_VLPERKKTK_					0	0	0			REV__ENST00000334746.9_2_14:93761061-93761256:-|nuORF	REV__ENST00000334746.9_2_14:93761061-93761256:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.2879028320312	2	549.853316	1097.69208	-1.1055	-0.00060787	0.4076	0.00022412	-0.6979	-0.00038374	549.8534821619307	41.982	0.4109	39.001	38.853	39.264	-2.9804					12	7	2	0	0	0	0.027462	1	1918	1918		22.58	3.2197	1	17908	+		61072	24572	50393	50438	66893	66893					0.14713973048037587
VLPGHGLCGAL	11	Unmodified	_VLPGHGLCGAL_					0	0	0			REV__nc|ENSG00000090659|Q9NNX6-4|CD209	REV__nc|ENSG00000090659|Q9NNX6-4|CD209	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.7722778320312	2	518.784044	1035.55354	-0.41085	-0.00021314	-1.5721	-0.0008156	-1.983	-0.0010287	518.7833882861055	56.289	0.75723	52.995	52.668	53.425	-3.2944					26	14	2	0	0	0	0.025652	1	3566	3566		17.365	0	1	26394	+		61073	17229	50394	50439	66894	66894					0.03718106808059929
VLPHFNVLF	9	Unmodified	_VLPHFNVLF_					0	0	0		ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	ENSG00000103043|ENST00000261776|VAC14	MULTI-MSMS	OvCa99_classI_Rep5	1	543.3131713867188	2	543.310752	1084.60695	1.7151	0.00093183	0.16667	9.0552E-05	1.8818	0.0010224	543.3106919254462	133.53	0.69241	133.53	133.17	133.86	0					33	14	3	0	0	0	0.17908	1	15538	15538		79.939	26.588	1	179900			61074	2276	50395	50440	66895	66895					0.06803227582213367
VLPIKLRQKS	10	Unmodified	_VLPIKLRQKS_					0	0	0			REV__MKI67|p.K2670Nfs*23|1|0.03|ENSG00000148773|chr10:128103824-128103836|CTTTTCCTTAGGT/-|frameshift_variant	REV__MKI67|p.K2670Nfs*23|1|0.03|ENSG00000148773|chr10:128103824-128103836|CTTTTCCTTAGGT/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	591.3734130859375	2	591.390065	1180.76558	-0.60285	-0.00035652	0.53079	0.0003139	-0.072058	-4.2614E-05	591.3907368848458	73.834	0.1919	70.438	70.366	70.557	-3.3961					6	3	2	0	0	0	0.027088	1	5749	5749		14.137	0	1	23169	+		61075	20125	50396	50441	66896	66896					0.18242521490515173
VLPKAVSKV	9	Unmodified	_VLPKAVSKV_					0	0	0			REV__ENST00000600120.5_1_19:53612282-53612552:-|nuORF	REV__ENST00000600120.5_1_19:53612282-53612552:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	470.2115783691406	2	470.813128	939.611703	0.29796	0.00014028	-0.84343	-0.0003971	-0.54547	-0.00025681	470.8126762442574	111.59	0.7384	111.45	111.18	111.91	-0.13961					26	14	2	0	0	0	0.027462	1	10505	10505		35.618	17.294	1	38034	+		61076	28027	50397	50442	66897	66897					0.13948111724982937
VLPKAVSKV	9	Unmodified	_VLPKAVSKV_					0	0	0			REV__ENST00000600120.5_1_19:53612282-53612552:-|nuORF	REV__ENST00000600120.5_1_19:53612282-53612552:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	470.813128	939.611703	2.1085	0.0009927	-2.285	-0.0010758	-0.17656	-8.3126E-05	470.81188390415423	112.56	0.68979	111.49	111.27	111.96	-1.0753	-0.005726	-0.0007739	NaN	20.947	24	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46882	+		61077	28027	50397	50442							0.13948111724982937
VLPKKRAH	8	Unmodified	_VLPKKRAH_					0	0	0			REV__ZNF473|p.R712Pfs*8|1|0.23|ENSG00000142528|chr19:50046575-50046576|-/C|frameshift_variant	REV__ZNF473|p.R712Pfs*8|1|0.23|ENSG00000142528|chr19:50046575-50046576|-/C|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.78594970703125	2	474.808711	947.602869	-0.63459	-0.00030131	-1.9961	-0.00094776	-2.6307	-0.0012491	474.8098160160223	52.016	0.16691	52.016	51.871	52.038	0					5	3	2	0	0	0	0.028476	1	4048	4048		13.775	0	1	89441	+		61078	19789	50398	50443	66898	66898					0.12697182879162483
VLPKLYVKL	9	Unmodified	_VLPKLYVKL_					0	0	0		nc|ENSG00000196933|Q5JNZ5|RPS26P11;ENSG00000197728|ENST00000646449|RPS26;ENST00000444468.1_1_X:128542382-128542532:+|nuORF;ENST00000471178.2_1_19:35024355-35024547:-|nuORF;ENST00000465478.1_1_8:93156318-93156576:-|nuORF;chr12:56043049-56043363|135|553.61|0.95|9.19|+|2|None,RPS26|1	nc|ENSG00000196933|Q5JNZ5|RPS26P11	nc|ENSG00000196933|Q5JNZ5|RPS26P11	MULTI-MSMS	OvCa99_classI_Rep5	1	536.8614501953125	2	536.860078	1071.7056	2.4621	0.0013218	-0.40029	-0.0002149	2.0618	0.0011069	536.8598179112886	96.481	2.251	96.481	96.21	98.461	0					158	52	6	0	0	0	0.079296	3	10553	10553;10583;10612		102.77	20.468	1	32808000			61079	8740	50399	50444	66899;66900;66901	66899					0.17261830827260383
VLPPASLAT	9	Unmodified	_VLPPASLAT_					0	0	0		L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|196|1|anti-sense	L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|196|1|anti-sense	L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|196|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	435.2627868652344	2	434.760561	867.506569	2.2015	0.00095713	0.28549	0.00012412	2.487	0.0010813	434.760561099661	119.89	0.34784	119.89	119.7	120.05	0					11	7	2	0	0	0	0.027462	1	13778	13778		11.511	0	1	66166			61080	14784	50400	50445	66902	66902					0.06751570528570028
VLPPRRLQ	8	Unmodified	_VLPPRRLQ_					0	0	0		ENST00000302754.5_1_19:12903636-12903888:+|nuORF	ENST00000302754.5_1_19:12903636-12903888:+|nuORF	ENST00000302754.5_1_19:12903636-12903888:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.7808837890625	2	489.813993	977.613434	-1.0244	-0.00050176	0.95462	0.00046759	-0.069755	-3.4167E-05	489.81419183641106	49.879	0.56576	49.879	49.679	50.245	0					24	12	3	0	0	0	0.028476	1	3803	3803		42.474	8.9589	1	259770			61081	10207	50401	50446	66903	66903					0.1237316553359733
VLPQIITNYIL	11	Unmodified	_VLPQIITNYIL_					0	0	0		tr|A0A553STT7|A0A553STT7_NIACIClassAbeta-lactamase-relatedserinehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05735PE=4SV=1	tr|A0A553STT7|A0A553STT7_NIACIClassAbeta-lactamase-relatedserinehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05735PE=4SV=1	tr|A0A553STT7|A0A553STT7_NIACIClassAbeta-lactamase-relatedserinehydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05735PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	429.25177001953125	3	429.595468	1285.76457	-0.50899	-0.00021866	2.1678	0.00093128	1.6588	0.00071262	429.59622782835794	91.801	0.25558	89.777	89.685	89.941	-2.0241					5	4	2	0	0	0	0.025338	1	5788	5788		33.039	0	1	8561.1			61082	34532	50402	50447	66904	66904					0.1331226233094185
VLPSVLNKF	9	Unmodified	_VLPSVLNKF_					0	0	0		nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	MULTI-MSMS	OvCa99_classI_Rep5	1	508.8127136230469	2	508.810585	1015.60662	2.476	0.0012598	0.15381	7.8262E-05	2.6299	0.0013381	508.8104441193225	106.38	0.61996	106.38	106.14	106.76	0					37	13	4	0	0	0	0.3076	1	11966	11966		62.107	12.083	1	2328700			61083	8748	50403	50448	66905	66905					0.09943807862373433
VLPTLTSR	8	Unmodified	_VLPTLTSR_					0	0	0		ENST00000274853.7_1_6:30653758-30653977:-|nuORF	ENST00000274853.7_1_6:30653758-30653977:-|nuORF	ENST00000274853.7_1_6:30653758-30653977:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.77276611328125	2	443.77146	885.528367	-0.44442	-0.00019722	0.36717	0.00016294	-0.077249	-3.4281E-05	443.7714442908195	105.95	1.1166	103.94	103.55	104.66	-2.0161					36	21	2	0	0	0	0.028476	1	9600	9600		33.516	9.3128	1	93486			61084	10022	50404	50449	66906	66906					0.08102375277144347
VLPTLTSR	8	Unmodified	_VLPTLTSR_					0	0	0		ENST00000274853.7_1_6:30653758-30653977:-|nuORF	ENST00000274853.7_1_6:30653758-30653977:-|nuORF	ENST00000274853.7_1_6:30653758-30653977:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	443.77146	885.528367	1.1723	0.00052023	-0.90664	-0.00040234	0.26566	0.00011789	443.7709379025655	104.62	1.2878	104.04	103.77	105.06	-0.57639	0.071898	-0.00031627	NaN	33.516	45	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90346			61085	10022	50404	50449							0.08102375277144347
VLPTLTSR	8	Unmodified	_VLPTLTSR_					0	0	0		ENST00000274853.7_1_6:30653758-30653977:-|nuORF	ENST00000274853.7_1_6:30653758-30653977:-|nuORF	ENST00000274853.7_1_6:30653758-30653977:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	443.77146	885.528367	0.6661	0.0002956	-0.76148	-0.00033792	-0.095378	-4.2326E-05	443.7709839581242	105.28	1.0415	103.93	103.68	104.72	-1.3482	-0.040822	-0.00018744	NaN	33.516	28	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94031			61086	10022	50404	50449							0.08102375277144347
VLPVGATELI	10	Unmodified	_VLPVGATELI_					0	0	0			REV__ENSG00000164855|ENST00000297477|TMEM184A	REV__ENSG00000164855|ENST00000297477|TMEM184A	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.3307189941406	2	506.307875	1010.6012	0.92848	0.00047009	-1.4	-0.00070884	-0.47154	-0.00023874	506.3069174049992	124.23	0.51908	123.19	122.97	123.49	-1.0377					15	9	3	0	0	0	0.026802	1	9602	9602		42.396	0	1	14725	+		61087	21027	50405	50450	66907	66907					0.0963208427989457
VLPVSTGILF	10	Unmodified	_VLPVSTGILF_					0	0	0			REV__ENST00000553355.1_1_14:58818057-58818162:+|nuORF	REV__ENST00000553355.1_1_14:58818057-58818162:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.6450805664062	2	523.318243	1044.62193	1.3829	0.00072369	0.70647	0.00036971	2.0894	0.0010934	523.3183719029342	126.09	0.74806	126.09	125.57	126.32	0					29	15	3	0	0	0	0.027021	1	14584	14584		21.96	0	1	114600	+		61088	27512	50406	50451	66908	66908					0.1014067465955577
VLQAADILLYK	11	Unmodified	_VLQAADILLYK_					0	0	0		ENSG00000116874|ENST00000235521|WARS2;nc|ENSG00000116874|Q9UGM6-2|WARS2	ENSG00000116874|ENST00000235521|WARS2	ENSG00000116874|ENST00000235521|WARS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	623.8732299804688	2	623.873914	1245.73327	-0.47704	-0.00029762	0.16669	0.00010399	-0.31035	-0.00019362	623.8740510173809	117.3	0.99458	115.93	115.61	116.61	-1.3645					51	18	4	0	0	0	0.54737	1	10973	10973		49.466	16.653	1	63615			61089	3216	50407	50452	66909	66909					0.12023689296825069
VLQAADILLYK	11	Unmodified	_VLQAADILLYK_					0	0	0		ENSG00000116874|ENST00000235521|WARS2;nc|ENSG00000116874|Q9UGM6-2|WARS2	ENSG00000116874|ENST00000235521|WARS2	ENSG00000116874|ENST00000235521|WARS2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	623.873914	1245.73327	-1.4711	-0.00091777	1.4189	0.00088518	-0.052229	-3.2584E-05	623.874703802253	116.2	0.89163	116.08	115.79	116.68	-0.11777	0.083544	0.0013468	NaN	49.466	41	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56650			61090	3216	50407	50452							0.12023689296825069
VLQAADILLYK	11	Unmodified	_VLQAADILLYK_					0	0	0		ENSG00000116874|ENST00000235521|WARS2;nc|ENSG00000116874|Q9UGM6-2|WARS2	ENSG00000116874|ENST00000235521|WARS2	ENSG00000116874|ENST00000235521|WARS2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	623.873914	1245.73327	-0.02467	-1.5391E-05	-0.14282	-8.91E-05	-0.16749	-0.00010449	623.8737489977119	117.02	0.84222	115.98	115.75	116.59	-1.0324	-0.01539	-0.00060174	NaN	49.466	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62487			61091	3216	50407	50452							0.12023689296825069
VLQAGVGVAIL	11	Unmodified	_VLQAGVGVAIL_					0	0	0			REV__ENSG00000135404|ENST00000257857|CD63	REV__ENSG00000135404|ENST00000257857|CD63	MULTI-MSMS	OvCa9_classI_Rep3	3	520.329345703125	2	520.329142	1038.64373	-0.29574	-0.00015388	-0.27656	-0.0001439	-0.57231	-0.00029779	520.3288824399598	115.77	1.6292	114.72	114.06	115.69	-1.0414					54	32	2	0	0	0	0.62497	1	8641	8641		42.396	0	1	448460	+		61092	19283	50408	50453	66910	66910					0.12595479408128085
VLQASIDAAII	11	Unmodified	_VLQASIDAAII_					0	0	0		ENSG00000154265|ENST00000392676|ABCA5;nc|ENSG00000154265|Q8WWZ7-2|ABCA5	ENSG00000154265|ENST00000392676|ABCA5	ENSG00000154265|ENST00000392676|ABCA5	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.3304443359375	2	557.329339	1112.64412	-0.031635	-1.7631E-05	-0.86807	-0.0004838	-0.8997	-0.00050143	557.3287360893569	82.001	2.0398	79.318	78.914	80.954	-2.6829					73	41	4	0	0	0	0.14417	1	6765	6765		87.696	9.4327	1	770810			61093	5726	50409	50454	66911	66911					0.0923085433732922
VLQAWLEEA	9	Unmodified	_VLQAWLEEA_					0	0	0		ENSG00000091010|ENST00000646991|POU4F3	ENSG00000091010|ENST00000646991|POU4F3	ENSG00000091010|ENST00000646991|POU4F3	MULTI-SECPEP	OvCa9_classI_Rep3	3	530.3082275390625	2	529.779482	1057.54441	-0.35365	-0.00018736	-0.10099	-5.3505E-05	-0.45465	-0.00024086	529.779003987753	118.32	0.14926	117.29	117.18	117.33	-1.0324					4	2	2	0	0	0	0.027462	1	8915	8915		29.15	2.3535	1	5213.7			61094	1858	50410	50455	66912	66912					0.017940367233904908
VLQCDGCDFRA	11	Unmodified	_VLQCDGCDFRA_					0	0	0		ZNF462|p.Q1930Rfs*3|1|0.04|ENSG00000148143|chr9:106929701-106929701|A/-|frameshift_variant;ENSG00000148143|ENST00000277225|ZNF462;nc|ENSG00000148143|Q96JM2-3|ZNF462;ZNF462|p.K1242Rfs*39|1|0.04|ENSG00000148143|chr9:106927636-106927636|A/-|frameshift_variant	ZNF462|p.Q1930Rfs*3|1|0.04|ENSG00000148143|chr9:106929701-106929701|A/-|frameshift_variant	ZNF462|p.Q1930Rfs*3|1|0.04|ENSG00000148143|chr9:106929701-106929701|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	613.768310546875	2	613.768265	1225.52198	0.13526	8.3016E-05	0.16224	9.9579E-05	0.2975	0.00018259	613.7682235165312	62.227	0.6266	62.227	61.994	62.621	0					33	14	3	0	0	0	0.56391	1	5519	5519		47.96	3.5823	1	3400000			61095	5386	50411	50456	66913	66913					-0.08176254008185424
VLQEKIEVV	9	Unmodified	_VLQEKIEVV_					0	0	0		nc|ENSG00000163681|Q14BN4-3|SLMAP;nc|ENSG00000163681|Q14BN4|SLMAP;ENSG00000163681|ENST00000671191|SLMAP;nc|ENSG00000163681|Q14BN4-2|SLMAP;nc|ENSG00000163681|Q14BN4-7|SLMAP;ENST00000467901.1_1_3:57743378-57875870:+|nuORF;nc|ENSG00000163681|Q14BN4-6|SLMAP	nc|ENSG00000163681|Q14BN4-3|SLMAP	nc|ENSG00000163681|Q14BN4-3|SLMAP	MULTI-MSMS	OvCa99_classI_Rep5	1	528.8198852539062	2	528.818607	1055.62266	2.0567	0.0010876	0.25441	0.00013454	2.3112	0.0012222	528.8185947375962	84.021	0.71661	84.021	83.671	84.388	0					41	16	4	0	0	0	0.29519	1	8749	8749		63.534	14.092	1	2265400			61096	6345	50412	50457	66914	66914					0.09707469308591499
VLQFSYLE	8	Unmodified	_VLQFSYLE_					0	0	0			REV__ENST00000311275.11_1_20:45838157-45838328:-|nuORF	REV__ENST00000311275.11_1_20:45838157-45838328:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.7647399902344	2	499.7633	997.512048	-1.053	-0.00052626	4.0977	0.0020479	3.0447	0.0015216	499.76572667649543	127.6	4.5409	126.16	125.39	129.93	-1.4357					197	90	5	0	0	0	0.64026	1	12166	12166		55.504	0.72789	1	12586000	+		61097	24348	50413	50458	66915	66915					0.01319249320374638
VLQGKLAEV	9	Unmodified	_VLQGKLAEV_					0	0	0		MACF1-CMTM4|1|fusion;MACF1-CMTM4|2|fusion;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1	MACF1-CMTM4|1|fusion;nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OvCa99_classI_Rep5	1	478.79400634765625	2	478.792392	955.570232	-0.12544	-6.006E-05	0.76674	0.00036711	0.6413	0.00030705	478.7926156912613	71.368	1.2652	71.368	71.109	72.374	0					62	30	4	0	0	0	0.12515	1	6918	6918		90.37	13.596	1	6452400			61098	15005;14812	50414	50459	66916	66916					0.09066930965650499
VLQIFLDHSLP	11	Unmodified	_VLQIFLDHSLP_					0	0	0			REV__tr|A0A553SPL9|A0A553SPL9_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_26665PE=4SV=1	REV__tr|A0A553SPL9|A0A553SPL9_NIACIYitTfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_26665PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	427.9090881347656	3	427.911568	1280.71287	-2.4401	-0.0010441	-2.8797	-0.0012323	-5.3198	-0.0022764	427.91030319374806	37.38	1.1325	34.67	34.337	35.469	-2.7097					47	22	3	0	0	0	0.70032	1	1669	1669		29.551	5.3189	1	126010	+		61099	30549	50415	50460	66917	66917					0.08374518637037909
VLQIHNRATIS	11	Unmodified	_VLQIHNRATIS_					0	0	0			REV__nc|ENSG00000184047|Q9NR28-2|DIABLO	REV__nc|ENSG00000184047|Q9NR28-2|DIABLO	MULTI-MSMS	OvCa9_classI_Rep4_	4	417.9107971191406	3	417.910449	1250.70952	0.64477	0.00026946	-0.59893	-0.0002503	0.045838	1.9156E-05	417.9101922569634	35.248	1.798	32.399	32.139	33.937	-2.849					112	35	5	0	0	0	0.71498	1	1186	1186		16.53	0	1	905560	+		61100	22399	50416	50461	66918	66918					0.0941926858304214
VLQIRRDD	8	Unmodified	_VLQIRRDD_					0	0	0		ENSG00000182752|ENST00000328252|PAPPA	ENSG00000182752|ENST00000328252|PAPPA	ENSG00000182752|ENST00000328252|PAPPA	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7882080078125	2	507.788173	1013.56179	-0.71966	-0.00036543	0.16666	8.4628E-05	-0.553	-0.00028081	507.78818211844305	46.857	1.6349	44.147	43.646	45.281	-2.7097					89	32	4	0	0	0	0.7043	1	2824	2824		42.474	3.6683	1	755080			61101	8022	50417	50462	66919	66919					0.055553770490291754
VLQKNSYGIVI	11	Unmodified	_VLQKNSYGIVI_					0	0	0		HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|25|1|sense	HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|25|1|sense	HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|25|1|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	617.3450927734375	2	617.363713	1232.71287	-0.82929	-0.00051197	-0.38647	-0.00023859	-1.2158	-0.00075057	617.3634570072147	106.03	0.30063	105.59	105.35	105.65	-0.43642					6	5	2	0	0	0	0.025624	1	9838	9838		22.58	9.1256	1	4777.5			61102	14467	50418	50463	66920	66920					0.105825186370339
VLQKSLQEC	9	Unmodified	_VLQKSLQEC_					0	0	0		ENST00000464510.5_1_7:100016692-100018272:-|nuORF;ZCWPW1|p.M406Hfs*6|1|0.06|ENSG00000078487|chr7:100405020-100405048|CTGATCTGTTCTGCCTCTTGAGCCATCAT/-|frameshift_variant;nc|ENSG00000078487|Q9H0M4-2|ZCWPW1;nc|ENSG00000078487|Q9H0M4-5|ZCWPW1;nc|ENSG00000078487|Q9H0M4|ZCWPW1;ENSG00000078487|ENST00000684423|ZCWPW1	ENST00000464510.5_1_7:100016692-100018272:-|nuORF	ENST00000464510.5_1_7:100016692-100018272:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	524.2785034179688	2	524.278792	1046.54303	1.2201	0.00063968	-1.4168	-0.00074281	-0.1967	-0.00010313	524.2778574863617	62.52	2.1768	59.486	58.872	61.049	-3.0339					76	45	2	0	0	0	0.63422	1	2265	2265		27.882	3.6795	1	81064			61103	1593	50419	50464	66921	66921					0.021620793629836044
VLQLEDADI	9	Unmodified	_VLQLEDADI_					0	0	0			REV__ENSG00000083857|ENST00000441802|FAT1	REV__ENSG00000083857|ENST00000441802|FAT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.8514404296875	2	508.268947	1014.52334	2.7569	0.0014013	1.3036	0.00066258	4.0605	0.0020638	508.2691999630864	90.316	0.48508	90.316	89.977	90.462	0					20	11	3	0	0	0	0.027462	1	9652	9652		56.721	12.604	1	629990	+		61104	17113	50420	50465	66922	66922					0.016660266238432087
VLQLEESIPPL	11	Unmodified	_VLQLEESIPPL_					0	0	0			REV__nc|ENSG00000290292|Q8IX15|HOMEZ	REV__nc|ENSG00000290292|Q8IX15|HOMEZ	MULTI-MSMS	OvCa99_classI_Rep5	1	619.3554077148438	2	619.355554	1236.69655	0.70522	0.00043678	-0.2292	-0.00014195	0.47603	0.00029483	619.3553399165137	151.16	0.66	151.16	150.84	151.5	0					28	12	3	0	0	0	0.17873	1	17692	17692		65.465	3.7741	1	141400	+		61105	29211	50421	50466	66923	66923					0.08767392680283592
VLQLKLGDEV	10	Unmodified	_VLQLKLGDEV_					0	0	0		ENSG00000240654|ENST00000332018|C1QTNF9	ENSG00000240654|ENST00000332018|C1QTNF9	ENSG00000240654|ENST00000332018|C1QTNF9	MULTI-MSMS	OvCa9_classI_Rep3	3	557.3307495117188	2	557.329339	1112.64412	-1.125	-0.00062701	0.78724	0.00043875	-0.33778	-0.00018825	557.3296777876608	81.591	2.7852	79.269	78.543	81.328	-2.3226					143	55	5	0	0	0	0.5675	1	4551	4551		45.972	0	1	858080			61106	9343	50422	50467	66924	66924					0.09230854337306482
VLQLLKVF	8	Unmodified	_VLQLLKVF_					0	0	0			REV__tr|A0A553SFU6|A0A553SFU6_NIACIEcsCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09520PE=4SV=1	REV__tr|A0A553SFU6|A0A553SFU6_NIACIEcsCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09520PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.31573486328125	2	480.318046	958.621539	4.0104	0.0019263	-4.1147	-0.0019764	-0.10425	-5.0071E-05	480.3158855709112	132.07	1.2133	130.57	130.27	131.48	-1.5014					57	23	4	0	0	0	0.75915	1	12766	12766		20.482	1.1219	1	95732	+		61107	29624	50423	50468	66925	66925					0.14057299730370687
VLQLLQALT	9	Unmodified	_VLQLLQALT_					0	0	0			REV__ENSG00000221821|ENST00000408925|C6orf226	REV__ENSG00000221821|ENST00000408925|C6orf226	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.3059387207031	2	499.815867	997.617182	2.237	0.0011181	-0.071498	-3.5736E-05	2.1655	0.0010824	499.8159729947327	96.603	0.45992	96.603	96.378	96.838	0					16	10	3	0	0	0	0.027462	1	10601	10601		23.042	0	1	401000	+		61108	23338	50424	50469	66926	66926					0.11827790516781533
VLQLLRQGVWA	11	Unmodified	_VLQLLRQGVWA_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	MULTI-MSMS	OvCa9_classI_Rep2	2	641.885498046875	2	641.885147	1281.75574	-5.2309	-0.0033576	1.1487	0.00073734	-4.0822	-0.0026203	641.8857521172959	156.09	0.52438	155.87	155.59	156.11	-0.22697					29	17	2	0	0	0	0.72511	1	15881	15881		14.137	0	1	12639			61109	4411	50425	50470	66927	66927					0.12613333485114708
VLQLLRQGVWA	11	Unmodified	_VLQLLRQGVWA_					0	0	0		ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	ENSG00000135749|ENST00000258229|PCNX2	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8833618164062	2	641.885147	1281.75574	-5.3554	-0.0034376	1.3541	0.00086916	-4.0013	-0.0025684	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.70865	1	13206	13206		26.693	0	1	804890			61110	4411	50425	50470	66928	66928					0.12613333485114708
VLQLSLRILD	10	Unmodified	_VLQLSLRILD_					0	0	0		ENSG00000100749|ENST00000216639|VRK1	ENSG00000100749|ENST00000216639|VRK1	ENSG00000100749|ENST00000216639|VRK1	MULTI-SECPEP	OvCa9_classI_Rep3	3	585.3501586914062	2	585.366256	1168.71796	-1.3804	-0.00080802	2.908	0.0017023	1.5277	0.00089424	585.3673524295357	73.05	0.44392	70.563	70.332	70.776	-2.4873					19	8	3	0	0	0	0.027088	1	3511	3511		14.137	0	1	38154			61111	2102	50426	50471	66929	66929					0.1403482249966146
VLQPGRALAL	10	Unmodified	_VLQPGRALAL_					0	0	0			REV__ENST00000263269.3_1_19:48946008-48947172:+|nuORF	REV__ENST00000263269.3_1_19:48946008-48947172:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	519.325927734375	2	519.326934	1036.63931	0.91528	0.00047533	-0.11424	-5.9329E-05	0.80104	0.000416	519.3263854293617	112.97	1.2349	112.84	112.62	113.86	-0.12174					63	24	3	0	0	0	0.50656	1	10741	10741		53.351	2.016	1	264040	+		61112	23997	50427	50472	66930	66930					0.12246014985225884
VLQPGRALAL	10	Unmodified	_VLQPGRALAL_					0	0	0			REV__ENST00000263269.3_1_19:48946008-48947172:+|nuORF	REV__ENST00000263269.3_1_19:48946008-48947172:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	519.3263549804688	2	519.326934	1036.63931	0.66301	0.00034432	0.14394	7.475E-05	0.80694	0.00041907	519.3265708894658	114.02	1.3609	112.96	112.68	114.04	-1.055					61	26	3	0	0	0	0.56767	1	8417	8417		45.952	1.8352	1	324950	+		61113	23997	50427	50472	66931	66931					0.12246014985225884
VLQQAVPVD	9	Unmodified	_VLQQAVPVD_					0	0	0		nc|ENSG00000188917|Q96GJ1-3|TRMT2B;ENSG00000188917|ENST00000372936|TRMT2B	nc|ENSG00000188917|Q96GJ1-3|TRMT2B	nc|ENSG00000188917|Q96GJ1-3|TRMT2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.7688903808594	2	484.7742	967.533846	-1.4814	-0.00071817	1.9534	0.00094696	0.47197	0.0002288	484.7745605280292	64.03	0.40006	64.03	63.894	64.294	0					15	9	2	0	0	0	0.027462	1	5795	5795		30.504	7.924	1	399110			61114	8518	50428	50473	66932	66932					0.04878054068944948
VLQRCGPHF	9	Unmodified	_VLQRCGPHF_					0	0	0			REV__ENST00000590772.1_1_19:14184406-14185180:+|nuORF	REV__ENST00000590772.1_1_19:14184406-14185180:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.3176879882812	2	528.774011	1055.53347	1.4877	0.00078666	-3.8999	-0.0020622	-2.4122	-0.0012755	528.7714899541293	109	0.78599	109	108.63	109.41	0					36	17	3	0	0	0	0.027456	1	12306	12306		47.916	14.423	1	633540	+		61115	27921	50429	50474	66933	66933					0.007923558680886345
VLQRLIHDR	9	Unmodified	_VLQRLIHDR_					0	0	0		nc|ENSG00000102763|A3KMH1-2|VWA8;nc|ENSG00000102763|A3KMH1-3|VWA8;ENSG00000102763|ENST00000379310|VWA8	nc|ENSG00000102763|A3KMH1-2|VWA8	nc|ENSG00000102763|A3KMH1-2|VWA8	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.34521484375	2	575.346189	1148.67783	-5.0623	-0.0029126	3.5523	0.0020438	-1.51	-0.00086875	575.3482262989531	155.36	0.8739	153.87	153.58	154.45	-1.4911					58	23	3	0	0	0	0.66262	1	15371	15371		24.519	1.4767	1	87893			61116	2252	50430	50475	66934	66934					0.10943320619730912
VLQRSLVTV	9	Unmodified	_VLQRSLVTV_					0	0	0		ENSG00000180104|ENST00000512944|EXOC3	ENSG00000180104|ENST00000512944|EXOC3	ENSG00000180104|ENST00000512944|EXOC3	MULTI-MSMS	OvCa99_classI_Rep5	1	507.819580078125	2	507.818941	1013.62333	1.3567	0.00068897	0.56369	0.00028625	1.9204	0.00097522	507.819224608109	79.219	0.75554	79.219	78.911	79.666	0					38	18	3	0	0	0	0.1944	1	8060	8060		77.318	0.54344	1	2098000			61117	7856	50431	50476	66935	66935					0.11706308748341598
VLQRVPLL	8	Unmodified	_VLQRVPLL_					0	0	0		L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|253|2|anti-sense	L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|253|2|anti-sense	L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|253|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	469.3134765625	2	469.313295	936.612037	-1.6036	-0.00075258	1.7508	0.00082167	0.14723	6.9096E-05	469.31392700337	119.59	0.88689	119.42	119.15	120.04	-0.17137					36	17	3	0	0	0	0.72922	1	11509	11509		37.028	7.1869	1	86272			61118	14757	50432	50477	66936	66936					0.14119531444839595
VLQSPNDQIQ	10	Unmodified	_VLQSPNDQIQ_					0	0	0			REV__ENSG00000111727|ENST00000229330|HCFC2	REV__ENSG00000111727|ENST00000229330|HCFC2	MULTI-SECPEP	OvCa9_classI_Rep2	2	571.8456420898438	2	571.296027	1140.5775	-1.5982	-0.00091307	1.8197	0.0010396	0.22143	0.0001265	571.296890800053	121.01	0.69119	120.81	120.65	121.35	-0.19718					22	13	2	0	0	0	0.027056	1	11719	11719		20.947	0	1	38072	+		61119	18053	50433	50478	66937	66937					0.012836187754373896
VLQSSLLP	8	Unmodified	_VLQSSLLP_					0	0	0			REV__nc|ENSG00000187243|Q96JG8-3|MAGED4	REV__nc|ENSG00000187243|Q96JG8-3|MAGED4	MULTI-MSMS	OvCa99_classI_Rep5	1	428.76171875	2	428.760561	855.506569	0.30422	0.00013044	0.21494	9.216E-05	0.51917	0.0002226	428.76054110725323	70.754	0.82037	70.754	70.447	71.267	0					35	20	2	0	0	0	0.56195	1	6794	6794		71.296	2.5089	1	1378200	+		61120	26264	50434	50479	66938	66938					0.07303570528563341
VLQSSLLP	8	Unmodified	_VLQSSLLP_					0	0	0			REV__nc|ENSG00000187243|Q96JG8-3|MAGED4	REV__nc|ENSG00000187243|Q96JG8-3|MAGED4	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	428.760561	855.506569	0.30422	0.00013044	0.21494	9.216E-05	0.51917	0.0002226	428.76054110725323	70.754	0.82037	70.754	70.447	71.267	0	0	0	NaN	71.296	35	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1378200	+		61121	26264	50434	50479							0.07303570528563341
VLQSTFSS	8	Unmodified	_VLQSTFSS_					0	0	0		nc|ENSG00000122376|Q86V20|SHLD2;ENSG00000122376|ENST00000298786|SHLD2;ENST00000554755.1_1_14:88420325-88420703:+|nuORF;ENST00000323387.5_10:47380981-47400428:+|nuORF	nc|ENSG00000122376|Q86V20|SHLD2	nc|ENSG00000122376|Q86V20|SHLD2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.7707214355469	2	434.724175	867.433798	-0.4246	-0.00018458	-0.24749	-0.00010759	-0.67208	-0.00029217	434.72397229108293	42.415	0.41069	39.435	39.312	39.723	-2.9804					9	7	2	0	0	0	0.028476	1	1999	1999		63.306	31.351	1	12605			61122	3528	50435	50480	66939	66939					-0.005221832648430791
VLQVPGPL	8	Unmodified	_VLQVPGPL_					0	0	0		ENST00000369037.8_1_6:107655524-107780637:-|nuORF	ENST00000369037.8_1_6:107655524-107780637:-|nuORF	ENST00000369037.8_1_6:107655524-107780637:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	411.75823974609375	2	411.757821	821.501089	2.1793	0.00089733	0.39798	0.00016387	2.5772	0.0010612	411.7577520903636	145.54	0.70364	145.54	145.27	145.98	0					23	14	2	0	0	0	0.72134	1	17026	17026		39.021	0	1	48806			61123	10888	50436	50481	66940	66940					0.0831989173675538
VLQWSPGDL	9	Unmodified	_VLQWSPGDL_					0	0	0			REV__ENST00000264220.6_1_4:57273852-57301749:-|nuORF	REV__ENST00000264220.6_1_4:57273852-57301749:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7666015625	2	507.766374	1013.5182	0.43978	0.0002233	-0.32354	-0.00016428	0.11624	5.9022E-05	507.76605298589374	131.19	1.6749	130.96	130.26	131.93	-0.22696					79	33	3	0	0	0	0.59259	1	12893	12893		32.812	2.3088	1	124560	+		61124	24014	50437	50482	66941	66941					0.01197767551900597
VLRAPPAPLS	10	Unmodified	_VLRAPPAPLS_					0	0	0		ENST00000261797.6_1_5:149933023-149933737:+|nuORF	ENST00000261797.6_1_5:149933023-149933737:+|nuORF	ENST00000261797.6_1_5:149933023-149933737:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	511.2696228027344	2	510.813659	1019.61277	-0.54304	-0.00027739	4.4042	0.0022497	3.8612	0.0019724	510.81576868169776	88.38	1.4145	86.249	85.287	86.702	-2.1309					64	27	3	0	0	0	0.027147	1	5396	5396		15.642	0	1	74940			61125	9873	50438	50483	66942	66942					0.10374326093892705
VLRAPPAPLS	10	Unmodified	_VLRAPPAPLS_					0	0	0		ENST00000261797.6_1_5:149933023-149933737:+|nuORF	ENST00000261797.6_1_5:149933023-149933737:+|nuORF	ENST00000261797.6_1_5:149933023-149933737:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	510.813659	1019.61277	0.75571	0.00038602	2.4721	0.0012628	3.2278	0.0016488	510.81469225942476	87.293	1.2766	85.862	84.962	86.239	-1.4311	-0.24164	-0.0017639	NaN	5.9211	56	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37887			61126	9873	50438	50483							0.10374326093892705
VLRAPPRSL	9	Unmodified	_VLRAPPRSL_					0	0	0		nc|ENSG00000130038|Q9BSW2-1|CRACR2A	nc|ENSG00000130038|Q9BSW2-1|CRACR2A	nc|ENSG00000130038|Q9BSW2-1|CRACR2A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.78619384765625	2	504.819276	1007.624	-0.59704	-0.0003014	-0.48132	-0.00024298	-1.0784	-0.00054438	504.8188480858217	74.787	0.53165	71.556	71.289	71.82	-3.2308					12	10	2	0	0	0	0.027462	1	5878	5878		18.324	0	1	16455			61127	15010	50439	50484	66943	66943					0.12049148188032177
VLRDLQLRKER	11	Unmodified	_VLRDLQLRKER_					0	0	0			REV__sp|Q6SW55|UL87_HCMVMUncharacterizedproteinUL87OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL87PE=3SV=1	REV__sp|Q6SW55|UL87_HCMVMUncharacterizedproteinUL87OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL87PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	476.32073974609375	3	475.959803	1424.85758	-0.027088	-1.2893E-05	3.7014	0.0017617	3.6743	0.0017488	476.29607086599515	108.67	0.24715	108.45	108.37	108.62	-0.22498					7	4	2	0	0	0	0.026101	1	10180	10180		26.75	9.583	1	10671	+		61128	29424	50440	50485	66944	66944					0.1621457983687833
VLRELPLRLFD	11	Unmodified	_VLRELPLRLFD_					0	0	0			REV__KLHL26|p.G315Rfs*20|1|0.47|ENSG00000167487|chr19:18668340-18668341|GG/-|frameshift_variant	REV__KLHL26|p.G315Rfs*20|1|0.47|ENSG00000167487|chr19:18668340-18668341|GG/-|frameshift_variant	MSMS	OvCa9_classI_Rep4_	4	457.6082763671875	3	457.61	1369.80817	NaN	NaN	NaN	NaN	NaN	NaN	NaN	156.88	1	155.34	154.84	155.84	-1.545								0	0	0	0.19474	1	15507	15507		13.508	0.55046	1		+		61129	21280	50441	50486	66945	66945					0.1380587182804902
VLREQALA	8	Unmodified	_VLREQALA_					0	0	0		ENSG00000170178|ENST00000406506|HOXD12	ENSG00000170178|ENST00000406506|HOXD12	ENSG00000170178|ENST00000406506|HOXD12	MULTI-MSMS	OvCa9_classI_Rep2	2	450.2692565917969	2	450.269084	898.523616	1.3254	0.0005968	-1.7002	-0.00076554	-0.37475	-0.00016874	450.2680012991639	61.146	3.3168	58.387	57.67	60.987	-2.7593					139	63	5	0	0	0	0.64026	1	4595	4595		55.504	4.1688	1	6706400			61130	7078	50442	50487	66946	66946					0.07029491134369437
VLRGLDTLV	9	Unmodified	_VLRGLDTLV_					0	0	0		ENSG00000237700|ENST00000437300|PRAMEF33;ENSG00000187545|ENST00000235347|PRAMEF10	ENSG00000237700|ENST00000437300|PRAMEF33	ENSG00000237700|ENST00000437300|PRAMEF33	MULTI-MSMS	OvCa9_classI_Rep2	2	493.3041076660156	2	493.305667	984.596781	0.47386	0.00023376	-0.28166	-0.00013895	0.19219	9.481E-05	493.30541764477005	114.35	1.2334	114.23	113.96	115.19	-0.11777					61	24	4	0	0	0	0.18193	1	10891	10891		79.451	16.145	1	230960			61131	8409	50443	50488	66947	66947					0.10386619856990364
VLRGPAVL	8	Unmodified	_VLRGPAVL_					0	0	0		ENST00000490362.1_1_2:217526523-217526805:+|nuORF;ENST00000436812.1_3_2:217526523-217528824:+|nuORF	ENST00000490362.1_1_2:217526523-217526805:+|nuORF	ENST00000490362.1_1_2:217526523-217526805:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	412.7710266113281	2	412.771263	823.527973	1.187	0.00048995	-0.67717	-0.00027952	0.5098	0.00021043	412.77082954843223	92.604	1.5518	91.436	91.024	92.575	-1.168					68	29	4	0	0	0	0.7043	1	8262	8262		42.474	14.22	1	349930			61132	11880	50444	50489	66948	66948					0.1091500034793853
VLRGPTAIIID	11	Unmodified	_VLRGPTAIIID_					0	0	0			REV__ENSG00000123064|ENST00000306014|DDX54	REV__ENSG00000123064|ENST00000306014|DDX54	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3564453125	2	584.358431	1166.70231	-2.312	-0.0013511	-1.149	-0.00067141	-3.461	-0.0020225	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.72516	1	14460	14460		13.454	0.49486	1	180810	+		61133	18620	50445	50490	66949	66949					0.12562535982578993
VLRGQNLVL	9	Unmodified	_VLRGQNLVL_					0	0	0		ENSG00000174456|ENST00000615315|C12orf76	ENSG00000174456|ENST00000615315|C12orf76	ENSG00000174456|ENST00000615315|C12orf76	MULTI-MSMS	OvCa9_classI_Rep2	2	506.3185729980469	2	506.319109	1010.62366	-0.7007	-0.00035478	0.29142	0.00014755	-0.40928	-0.00020722	506.31921288144724	59.031	1.6985	56.251	55.74	57.438	-2.7801					106	32	5	0	0	0	0.44294	1	4305	4305		47.916	1.9434	1	1253400			61134	7468	50446	50491	66950	66950					0.11877728468152782
VLRGQNLVL	9	Unmodified	_VLRGQNLVL_					0	0	0		ENSG00000174456|ENST00000615315|C12orf76	ENSG00000174456|ENST00000615315|C12orf76	ENSG00000174456|ENST00000615315|C12orf76	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.31976318359375	2	506.319109	1010.62366	-0.043025	-2.1785E-05	-0.723	-0.00036607	-0.76602	-0.00038785	506.3186788425481	59.763	1.7305	56.371	56.002	57.732	-3.392					100	34	4	0	0	0	0.25214	1	4009	4009		68.485	5.5063	1	2002600			61135	7468	50446	50491	66951	66951					0.11877728468152782
VLRHAPIK	8	Unmodified	_VLRHAPIK_					0	0	0			REV__ENSG00000150361|ENST00000377844|KLHL1	REV__ENSG00000150361|ENST00000377844|KLHL1	MULTI-MSMS	OvCa9_classI_Rep2	2	467.2996520996094	2	467.303262	932.59197	-2.6989	-0.0012612	-1.7541	-0.00081971	-4.453	-0.0020809	467.3023498206503	147.52	1.7467	147.29	146.82	148.57	-0.22696					88	34	4	0	0	0	0.74595	1	14909	14909		14.664	0	1	302680	+		61136	20187	50447	50492	66952	66952					0.12297780504877664
VLRHKALP	8	Unmodified	_VLRHKALP_					0	0	0			REV__TRIM9|p.L284Tfs*73|1|0.08|ENSG00000100505|chr14:51025333-51025334|-/GAAGAAAAGAAGAGAAAACTGTGGCCTGT|frameshift_variant	REV__TRIM9|p.L284Tfs*73|1|0.08|ENSG00000100505|chr14:51025333-51025334|-/GAAGAAAAGAAGAGAAAACTGTGGCCTGT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.300537109375	2	467.303262	932.59197	-1.8409	-0.00086028	-2.653	-0.0012397	-4.4939	-0.0021	467.30195282681905	148.29	1.8981	146.85	146.48	148.37	-1.435					87	38	4	0	0	0	0.75915	1	14600	14600		20.482	5.8177	1	733350	+		61137	17425	50448	50493	66953	66953					0.12297780504889033
VLRIRGLVP	9	Unmodified	_VLRIRGLVP_					0	0	0		ENSG00000205076|ENST00000378626|LGALS7;ENSG00000178934|ENST00000314980|LGALS7B;ACTN4-LGALS7B|1|fusion	ENSG00000205076|ENST00000378626|LGALS7	ENSG00000205076|ENST00000378626|LGALS7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.2548217773438	2	511.845294	1021.67603	-2.7263	-0.0013954	-2.8708	-0.0014694	-5.5971	-0.0028648	512.3441183065747	88.039	0.35225	85.437	85.327	85.679	-2.6027					8	6	2	0	0	0	0.027462	1	7503	7503		17.365	0	1	10510			61138	23	50449	50494	66954	66954					0.16606311601788093
VLRIRVDETN	10	Unmodified	_VLRIRVDETN_					0	0	0		tr|A0A553SKD7|A0A553SKD7_NIACIATP-dependentRecD2DNAhelicaseOS=NialliacirculansOX=1397GN=recD2PE=3SV=1	tr|A0A553SKD7|A0A553SKD7_NIACIATP-dependentRecD2DNAhelicaseOS=NialliacirculansOX=1397GN=recD2PE=3SV=1	tr|A0A553SKD7|A0A553SKD7_NIACIATP-dependentRecD2DNAhelicaseOS=NialliacirculansOX=1397GN=recD2PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	405.7445068359375	3	405.566571	1213.67788	1.5094	0.00061218	1.6706	0.00067756	3.1801	0.0012897	405.5671144430352	72.341	1.252	69.834	69.537	70.789	-2.5072					65	23	4	0	0	0	0.027006	1	5958	5958		18.531	0	1	222560			61139	33607	50450	50495	66955	66955					0.0795927582908007
VLRIVINKY	9	Unmodified	_VLRIVINKY_					0	0	0			REV__tr|A0A7D6VRF7|A0A7D6VRF7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00700PE=4SV=1	REV__tr|A0A7D6VRF7|A0A7D6VRF7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00700PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.74072265625	2	559.358234	1116.70191	3.8417	0.0021489	-2.5091	-0.0014035	1.3326	0.00074539	559.3566920045192	97.5	1.0264	97.5	97.18	98.206	0					67	23	4	0	0	0	0.027462	1	10669	10669		24.203	15.971	1	4960100	+		61140	31411	50451	50496	66956	66956					0.1482316105341397
VLRKDLVV	8	Unmodified	_VLRKDLVV_					0	0	0		tr|A0A553ST60|A0A553ST60_NIACIShikimatedehydrogenase(NADP(+))OS=NialliacirculansOX=1397GN=aroEPE=3SV=1	tr|A0A553ST60|A0A553ST60_NIACIShikimatedehydrogenase(NADP(+))OS=NialliacirculansOX=1397GN=aroEPE=3SV=1	tr|A0A553ST60|A0A553ST60_NIACIShikimatedehydrogenase(NADP(+))OS=NialliacirculansOX=1397GN=aroEPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	471.3117370605469	2	471.310752	940.606951	-0.25579	-0.00012056	0.44295	0.00020877	0.18716	8.8208E-05	471.31074535934926	52.251	0.96124	52.251	51.995	52.956	0					49	21	4	0	0	0	0.56195	1	4075	4075		71.296	8.3173	1	3788200			61141	34458	50452	50497	66957	66957					0.13427227582224077
VLRKDMEY	8	Unmodified	_VLRKDMEY_					0	0	0			REV__ENST00000443361.1_1_9:108285096-108287232:+|nuORF	REV__ENST00000443361.1_1_9:108285096-108287232:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.2725830078125	2	527.273509	1052.53247	0.077421	4.0822E-05	-2.783	-0.0014674	-2.7055	-0.0014266	527.2714560231624	97.529	1.6228	95.15	94.808	96.431	-2.3786					55	29	2	0	0	0	0.7224	1	8663	8663		38.806	2.3594	1	622050	+		61142	21827	50453	50498	66958	66958					0.008300967085460798
VLRKGQTE	8	Unmodified	_VLRKGQTE_					0	0	0			REV__tr|A0A7D6VW45|A0A7D6VW45_9CLOTGlutamine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=glnSPE=3SV=1	REV__tr|A0A7D6VW45|A0A7D6VW45_9CLOTGlutamine--tRNAligaseOS=ClostridiumintestinaleOX=36845GN=glnSPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	466.5392150878906	2	465.771991	929.529429	-1.1233	-0.00052322	1.5827	0.0007372	0.4594	0.00021398	465.77271225607717	43.704	0.3441	43.704	43.565	43.909	0					11	7	2	0	0	0	0.028476	1	2926	2926		29.15	3.6994	1	85351	+		61143	31741	50454	50499	66959	66959					0.061845896460340555
VLRKIIDSV	9	Unmodified	_VLRKIIDSV_					0	0	0		DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.F3496Wfs*92|1|0.14|ENSG00000197102|chr14:102034043-102034044|-/GACCTGGCAGCTGTCGAGGC|frameshift_variant;DYNC1H1|p.P2596Tfs*19|1|0.06|ENSG00000197102|chr14:102016936-102016937|-/A|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	521.835693359375	2	521.834591	1041.65463	-0.62411	-0.00032568	1.3965	0.00072876	0.77242	0.00040308	521.8351197363555	71.145	0.96175	71.145	70.954	71.916	0					54	23	3	0	0	0	0.13482	1	6884	6884		87.754	13.499	1	2409600			61144	767	50455	50500	66960	66960					0.13546881782394848
VLRKTAHRVD	10	Unmodified	_VLRKTAHRVD_					0	0	0		nc|ENSG00000070985|Q9NZQ8-2|TRPM5;ENSG00000070985|ENST00000696290|TRPM5	nc|ENSG00000070985|Q9NZQ8-2|TRPM5	nc|ENSG00000070985|Q9NZQ8-2|TRPM5	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8565063476562	2	597.856921	1193.69929	-0.38237	-0.0002286	-0.55263	-0.00033039	-0.935	-0.00055899	597.8564103488146	145.14	4.0194	143.71	141.51	145.53	-1.4357					229	77	4	0	0	0	0.79213	1	14120	14120		19.997	0	1	217250			61145	1442	50456	50501	66961	66961					0.11018705648439209
VLRKTLDP	8	Unmodified	_VLRKTLDP_					0	0	0		nc|ENSG00000132872|Q9H2B2-2|SYT4;ENSG00000132872|ENST00000255224|SYT4;SYT11|p.T212N|1|0.36|ENSG00000132718|chr1:155868565-155868565|C/A|missense_variant;ENSG00000132718|ENST00000368324|SYT11	nc|ENSG00000132872|Q9H2B2-2|SYT4	nc|ENSG00000132872|Q9H2B2-2|SYT4	MULTI-MSMS	OvCa9_classI_Rep2	2	471.2928771972656	2	471.292559	940.570566	0.33373	0.00015729	-0.47934	-0.00022591	-0.14561	-6.8623E-05	471.2921963660587	81.554	1.3417	79.906	79.514	80.856	-1.6485					81	25	4	0	0	0	0.59148	2	6919	6919;6942		65.803	0	1	678110			61146	4181	50457	50502	66962;66963	66962					0.09790350685523208
VLRLDSLDI	9	Unmodified	_VLRLDSLDI_					0	0	0		ENSG00000120696|ENST00000379483|KBTBD7	ENSG00000120696|ENST00000379483|KBTBD7	ENSG00000120696|ENST00000379483|KBTBD7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.7947998046875	2	522.308406	1042.60226	-0.53802	-0.00028101	-1.2855	-0.0006714	-1.8235	-0.00095242	522.3075458256926	77.719	0.82485	74.902	74.632	75.457	-2.8165					27	16	2	0	0	0	0.027462	1	6293	6293		10.265	0	1	84014			61147	3443	50458	50503	66964	66964					0.08266298648823067
VLRLEPLL	8	Unmodified	_VLRLEPLL_					0	0	0		ENSG00000165943|ENST00000298894|MOAP1;nc|ENSG00000183837|Q9UL41-2|PNMA3;ENSG00000183837|ENST00000593810|PNMA3	ENSG00000165943|ENST00000298894|MOAP1;nc|ENSG00000183837|Q9UL41-2|PNMA3	ENSG00000165943|ENST00000298894|MOAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	476.8145751953125	2	476.813128	951.611703	1.7196	0.00081992	0.031091	1.4825E-05	1.7507	0.00083475	476.8129673120749	112.36	0.63396	112.36	112.11	112.74	0					27	13	3	0	0	0	0.53531	1	12792	12792		73.975	0	1	376350			61148	6618;8116	50459	50504	66965	66965					0.13396111724989623
VLRLHRGAT	9	Unmodified	_VLRLHRGAT_					0	0	0			REV__ENST00000215555.6_1_19:8495585-8503477:+|nuORF	REV__ENST00000215555.6_1_19:8495585-8503477:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	511.81396484375	2	511.814525	1021.6145	-1.0737	-0.00054956	0.80088	0.0004099	-0.27287	-0.00013966	511.81478887315143	50.018	2.3782	47.224	46.637	49.015	-2.794					105	47	4	0	0	0	0.69895	1	3221	3221		18.324	1.8513	1	277830	+		61149	23708	50460	50505	66966	66966					0.10455379902521145
VLRLPTALL	9	Unmodified	_VLRLPTALL_					0	0	0		ENST00000492378.1_1_16:58756047-58768228:-|nuORF;ENST00000564400.5_1_16:58750074-58768228:-|nuORF;ENST00000496461.5_1_16:58752244-58768198:-|nuORF	ENST00000492378.1_1_16:58756047-58768228:-|nuORF	ENST00000492378.1_1_16:58756047-58768228:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	498.333251953125	2	498.334227	994.653902	1.2643	0.00063007	-1.8659	-0.00092985	-0.60157	-0.00029978	498.3332884380841	124.71	3.4398	123.66	123.27	126.71	-1.0519					179	65	5	0	0	0	0.63422	1	9785	9785		27.882	0	1	3929400			61150	12725	50461	50506	66967	66967					0.15636087133361798
VLRPGGWL	8	Unmodified	_VLRPGGWL_					0	0	0		ENST00000413170.1_1_13:101143948-101144026:+|nuORF	ENST00000413170.1_1_13:101143948-101144026:+|nuORF	ENST00000413170.1_1_13:101143948-101144026:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	449.2684326171875	2	449.268887	896.523222	3.2258	0.0014492	-3.3606	-0.0015098	-0.13485	-6.0583E-05	449.26732371902864	112.43	2.5171	112.3	111.93	114.45	-0.12174					121	50	4	0	0	0	0.72134	1	10679	10679		39.021	1.993	1	1472600			61151	11558	50462	50507	66968	66968					0.07082116205185685
VLRPGGWL	8	Unmodified	_VLRPGGWL_					0	0	0		ENST00000413170.1_1_13:101143948-101144026:+|nuORF	ENST00000413170.1_1_13:101143948-101144026:+|nuORF	ENST00000413170.1_1_13:101143948-101144026:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	449.2685852050781	2	449.268887	896.523222	0.9461	0.00042505	-1.0666	-0.00047918	-0.12048	-5.4127E-05	449.26835717612227	113.5	2.9115	112.42	112.15	115.06	-1.0753					133	57	4	0	0	0	0.72134	1	8344	8344		39.021	1.993	1	1514000			61152	11558	50462	50507	66969	66969					0.07082116205185685
VLRPGGWL	8	Unmodified	_VLRPGGWL_					0	0	0		ENST00000413170.1_1_13:101143948-101144026:+|nuORF	ENST00000413170.1_1_13:101143948-101144026:+|nuORF	ENST00000413170.1_1_13:101143948-101144026:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	449.2686767578125	2	449.268887	896.523222	1.103	0.00049553	-1.2615	-0.00056675	-0.15852	-7.1219E-05	449.26826553228875	113.95	2.2702	112.5	112.2	114.47	-1.4461					120	44	4	0	0	0	0.68312	2	10562	10562;10598		46.766	7.7449	1	1786500			61153	11558	50462	50507	66970;66971	66970					0.07082116205185685
VLRPLRRA	8	Unmodified	_VLRPLRRA_					0	0	0		ENST00000568223.6_1_16:767979-768486:+|nuORF	ENST00000568223.6_1_16:767979-768486:+|nuORF	ENST00000568223.6_1_16:767979-768486:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	490.7815246582031	2	490.827435	979.640317	-1.0439	-0.00051237	-3.6737	-0.0018031	-4.7176	-0.0023155	490.82605171643235	49.921	0.25983	49.921	49.813	50.073	0					8	5	2	0	0	0	0.028476	1	3748	3748		13.775	5.544	1	119320			61154	13867	50463	50508	66972	66972					0.1496827414479185
VLRPSRGGVG	10	Unmodified	_VLRPSRGGVG_					0	0	0			REV__chr14:19062466-19066001|365|14.16|0.48|4.89|+|1|DUXAP9,DUXAP9|1	REV__chr14:19062466-19066001|365|14.16|0.48|4.89|+|1|DUXAP9,DUXAP9|1	MULTI-MSMS	OvCa9_classI_Rep2	2	499.29864501953125	2	499.298707	996.582862	-0.29321	-0.0001464	0.22629	0.00011299	-0.066926	-3.3416E-05	499.2986442067123	31.671	0.84046	28.961	28.789	29.63	-2.7097					27	16	2	0	0	0	0.74374	1	985	985		25.574	0	1	54741	+		61155	15905	50464	50509	66973	66973					0.0844338714857713
VLRQITYA	8	Unmodified	_VLRQITYA_					0	0	0			REV__tr|A0A553SKJ7|A0A553SKJ7_NIACIFructose-1,6-bisphosphataseclass3OS=NialliacirculansOX=1397GN=fbpPE=3SV=1	REV__tr|A0A553SKJ7|A0A553SKJ7_NIACIFructose-1,6-bisphosphataseclass3OS=NialliacirculansOX=1397GN=fbpPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.2860107421875	2	482.284734	962.554916	0.4153	0.00020029	-0.83845	-0.00040437	-0.42314	-0.00020407	482.28428570779477	89.843	3.2427	87.268	86.851	90.093	-2.575					120	63	4	0	0	0	0.59148	1	7717	7717		65.803	2.4969	1	1527800	+		61156	30132	50465	50510	66974	66974					0.07214064168454115
VLRRLWYI	8	Unmodified	_VLRRLWYI_					0	0	0			REV__ENST00000409592.7_1_2:225761057-225796351:-|nuORF	REV__ENST00000409592.7_1_2:225761057-225796351:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.8173828125	2	559.845294	1117.67603	2.3559	0.001319	-2.0299	-0.0011364	0.32601	0.00018252	559.8440157379238	136.12	0.5166	136.12	135.92	136.44	0					17	10	2	0	0	0	0.028476	1	15899	15899		21.702	0	1	78418	+		61157	25472	50466	50511	66975	66975					0.12190311601762005
VLRRPPIL	8	Unmodified	_VLRRPPIL_					0	0	0		nc|ENSG00000127586|Q8WVB6-2|CHTF18;ENSG00000127586|ENST00000262315|CHTF18;ENST00000471202.5_1_16:838684-840117:+|nuORF;ENST00000479976.5_1_16:838624-840569:+|nuORF	nc|ENSG00000127586|Q8WVB6-2|CHTF18	nc|ENSG00000127586|Q8WVB6-2|CHTF18	MULTI-SECPEP	OvCa9_classI_Rep3	3	482.28521728515625	2	482.326737	962.63892	-0.43093	-0.00020785	-0.12416	-5.9886E-05	-0.55509	-0.00026773	482.32645244281224	88.97	1.0385	86.839	86.607	87.645	-2.1309					26	20	2	0	0	0	0.028476	1	5491	5491		37.028	8.7742	1	18037			61158	15004	50467	50512	66976	66976					0.1561064005602475
VLRRPPIL	8	Unmodified	_VLRRPPIL_					0	0	0		nc|ENSG00000127586|Q8WVB6-2|CHTF18;ENSG00000127586|ENST00000262315|CHTF18;ENST00000471202.5_1_16:838684-840117:+|nuORF;ENST00000479976.5_1_16:838624-840569:+|nuORF	nc|ENSG00000127586|Q8WVB6-2|CHTF18	nc|ENSG00000127586|Q8WVB6-2|CHTF18	MULTI-MATCH	OvCa9_classI_Rep2	2		2	482.326737	962.63892	1.4439	0.00069644	-1.865	-0.00089956	-0.42112	-0.00020312	482.3257268226121	88	0.73444	86.589	86.308	87.043	-1.4105	-0.20024	-0.0007015	NaN	37.028	21	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12747			61159	15004	50467	50512							0.1561064005602475
VLRSDDEND	9	Unmodified	_VLRSDDEND_					0	0	0		tr|A0A7D6ZZX2|A0A7D6ZZX2_9CLOTYopXproteindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07930PE=4SV=1	tr|A0A7D6ZZX2|A0A7D6ZZX2_9CLOTYopXproteindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07930PE=4SV=1	tr|A0A7D6ZZX2|A0A7D6ZZX2_9CLOTYopXproteindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07930PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.7373657226562	2	531.738542	1061.46253	2.9257	0.0015557	-4.4686	-0.0023761	-1.5429	-0.0008204	531.7359528583855	131.53	2.1105	130.03	128.93	131.05	-1.5014					80	42	3	0	0	0	0.50149	1	12646	12646		42.396	3.59	1	90158			61160	35978	50468	50513	66977	66977					-0.06574110426390689
VLRSIVSII	9	Unmodified	_VLRSIVSII_					0	0	0			REV__tr|A0A7D7A052|A0A7D7A052_9CLOTGlycogensynthaseOS=ClostridiumintestinaleOX=36845GN=glgAPE=3SV=1	REV__tr|A0A7D7A052|A0A7D7A052_9CLOTGlycogensynthaseOS=ClostridiumintestinaleOX=36845GN=glgAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.3128662109375	2	500.331685	998.648816	0.84335	0.00042195	2.2297	0.0011156	3.0731	0.0015376	500.33400654875584	129.31	0.24635	127.85	127.69	127.94	-1.4565					6	4	2	0	0	0	0.027462	1	12370	12370		37.159	8.0096	1	5801.1	+		61161	32436	50469	50514	66978	66978					0.1494378327075765
VLRSLGRQV	9	Unmodified	_VLRSLGRQV_					0	0	0			REV__sp|P16736|HELI_HCMVADNAreplicationhelicaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=HELIPE=3SV=1	REV__sp|P16736|HELI_HCMVADNAreplicationhelicaseOS=Humancytomegalovirus(strainAD169)OX=10360GN=HELIPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.755615234375	2	514.322183	1026.62981	1.3247	0.00068135	2.706	0.0013917	4.0307	0.0020731	514.8261239989127	109.15	0.21914	109.15	109.06	109.28	0					5	4	2	0	0	0	0.027462	1	12354	12354		47.657	12.039	1	23070	+		61162	29408	50470	50515	66979	66979					0.11756246699701478
VLRSNYKF	8	Unmodified	_VLRSNYKF_					0	0	0			REV__nc|ENSG00000278970|Q8NB50-2|ZFP62	REV__nc|ENSG00000278970|Q8NB50-2|ZFP62	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.317626953125	2	513.790184	1025.56581	-1.1578	-0.00059489	-3.5152	-0.0018061	-4.673	-0.002401	513.78867673992	55.133	0.81651	51.885	51.491	52.307	-3.2474					24	15	2	0	0	0	0.028476	1	3503	3503		12.959	0	1	76583	+		61163	22855	50471	50516	66980	66980					0.05405466542742943
VLRTALHYVAR	11	Unmodified	_VLRTALHYVAR_					0	0	0			REV__ENSG00000057468|ENST00000263187|MSH4	REV__ENSG00000057468|ENST00000263187|MSH4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.2565002441406	3	433.594573	1297.76189	1.5177	0.00065808	-4.1054	-0.0017801	-2.5876	-0.001122	433.59272120376585	37.472	0.54869	34.58	34.392	34.941	-2.8925					14	10	2	0	0	0	0.02625	1	1409	1409		9.2118	0	1	16580	+		61164	16720	50472	50517	66981	66981					0.12491851716640667
VLRTKEAF	8	Unmodified	_VLRTKEAF_					0	0	0		ENST00000462159.1_1_1:100573356-100598412:-|nuORF;ENSG00000156876|ENST00000287482|SASS6	ENST00000462159.1_1_1:100573356-100598412:-|nuORF	ENST00000462159.1_1_1:100573356-100598412:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	482.2839660644531	2	482.284734	962.554916	1.4873	0.00071731	-1.7499	-0.00084393	-0.26255	-0.00012662	482.2838148117403	88.658	2.4683	87.29	86.839	89.307	-1.3676					116	49	4	0	0	0	0.61758	1	7763	7763		60.294	3.5729	1	1008100			61165	5862	50473	50518	66982	66982					0.07214064168454115
VLRTKEAF	8	Unmodified	_VLRTKEAF_					0	0	0		ENST00000462159.1_1_1:100573356-100598412:-|nuORF;ENSG00000156876|ENST00000287482|SASS6	ENST00000462159.1_1_1:100573356-100598412:-|nuORF	ENST00000462159.1_1_1:100573356-100598412:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	482.2851867675781	2	482.284734	962.554916	-0.49751	-0.00023994	0.076092	3.6698E-05	-0.42142	-0.00020325	482.2847079453586	89.393	3.1361	87.262	86.846	89.982	-2.1309					129	61	4	0	0	0	0.65062	2	5480	5480;5520		53.351	2.016	1	1830700			61166	5862	50473	50518	66983;66984	66983					0.07214064168454115
VLRVELKHSAN	11	Unmodified	_VLRVELKHSAN_					0	0	0			REV__nc|ENSG00000107669|O95260-2|ATE1	REV__nc|ENSG00000107669|O95260-2|ATE1	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.3690795898438	2	633.369861	1264.72517	-3.7067	-0.0023477	2.7994	0.0017731	-0.90726	-0.00057463	633.3714685413702	153.42	3.7144	151.96	150.68	154.4	-1.4516					273	94	4	0	0	0	0.70142	1	15207	15207		29.17	2.4771	1	395790	+		61167	28785	50474	50519	66985	66985					0.10339555100085818
VLRVKHAGPA	10	Unmodified	_VLRVKHAGPA_					0	0	0		ABHD8|p.D175Rfs*30|1|0.1|ENSG00000127220|chr19:17301094-17301095|-/T|frameshift_variant;ABHD8|p.A222Pfs*47|2|0.55|ENSG00000127220|chr19:17300953-17300953|C/-|frameshift_variant;ENSG00000127220|ENST00000247706|ABHD8	ABHD8|p.D175Rfs*30|1|0.1|ENSG00000127220|chr19:17301094-17301095|-/T|frameshift_variant	ABHD8|p.D175Rfs*30|1|0.1|ENSG00000127220|chr19:17301094-17301095|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.806396484375	2	524.324725	1046.6349	-1.3186	-0.00069137	1.9221	0.0010078	0.6035	0.00031643	524.8277359840763	93.196	0.29984	90.689	90.513	90.813	-2.5072					7	5	2	0	0	0	0.026982	1	8101	8101		23.042	0	1	21602			61168	7	50475	50520	66986	66986					0.11344550562330369
VLRVNAGALS	10	Unmodified	_VLRVNAGALS_					0	0	0		ENSG00000075089|ENST00000188312|ACTR6	ENSG00000075089|ENST00000188312|ACTR6	ENSG00000075089|ENST00000188312|ACTR6	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.7185363769531	2	500.300916	998.587279	-0.67428	-0.00033734	0.5288	0.00026456	-0.14548	-7.2784E-05	500.30089298478254	40.178	0.64637	40.178	39.926	40.573	0					24	13	3	0	0	0	0.026734	1	2468	2468		39.253	3.6345	1	158840			61169	1523	50476	50521	66987	66987					0.08792851571456595
VLRVPVPPN	9	Unmodified	_VLRVPVPPN_					0	0	0		ENST00000600274.5_1_19:42396347-42410935:+|nuORF;nc|ENSG00000076928|Q92888-2|ARHGEF1;ENSG00000076928|ENST00000354532|ARHGEF1;nc|ENSG00000076928|Q92888-3|ARHGEF1;nc|ENSG00000076928|Q92888-4|ARHGEF1	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	ENST00000600274.5_1_19:42396347-42410935:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	495.805908203125	2	495.808377	989.6022	-3.0687	-0.0015215	-1.3757	-0.00068209	-4.4444	-0.0022036	495.80768519755566	143.85	1.3844	142.86	142.49	143.87	-0.9903					67	27	4	0	0	0	0.69895	1	11982	11982		18.324	0	1	103180			61170	1560	50477	50522	66988	66988					0.10698343439457858
VLRVQGVS	8	Unmodified	_VLRVQGVS_					0	0	0		ENSG00000176595|ENST00000320248|KBTBD11	ENSG00000176595|ENST00000320248|KBTBD11	ENSG00000176595|ENST00000320248|KBTBD11	MULTI-MSMS	OvCa9_classI_Rep4_	4	429.2634582519531	2	429.263802	856.513051	-0.2469	-0.00010599	0.063722	2.7354E-05	-0.18318	-7.8633E-05	429.26374368244154	41.185	2.2742	38.205	37.606	39.88	-2.9804					97	43	4	0	0	0	0.75241	1	1857	1857		25.45	0	1	644380			61171	7616	50478	50523	66989	66989					0.0790550847995064
VLRVTDPSGIL	11	Unmodified	_VLRVTDPSGIL_					0	0	0		ENST00000216797.9_1_14:35870881-35871004:-|nuORF	ENST00000216797.9_1_14:35870881-35871004:-|nuORF	ENST00000216797.9_1_14:35870881-35871004:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	585.7431030273438	2	585.348063	1168.68157	-2.3603	-0.0013816	1.568	0.00091783	-0.79232	-0.00046378	585.3489210509081	101.28	0.94308	99.672	99.344	100.29	-1.6053					48	17	4	0	0	0	0.025344	1	6938	6938		49.536	0	1	118970			61172	9680	50479	50524	66990	66990					0.10397945602949221
VLRVVATSF	9	Unmodified	_VLRVVATSF_					0	0	0			REV__nc|ENSG00000144406|Q8N2C7-7|UNC80	REV__nc|ENSG00000144406|Q8N2C7-7|UNC80	MULTI-MSMS	OvCa9_classI_Rep2	2	496.3003234863281	2	496.300384	990.586216	-0.35919	-0.00017827	0.21743	0.00010791	-0.14176	-7.0356E-05	496.30031555631194	121.97	1.1373	121.75	121.47	122.61	-0.21803					58	22	4	0	0	0	0.61208	1	11801	11801		30.504	0	1	202890	+		61173	19910	50480	50525	66991	66991					0.09054637202564209
VLRWAPFF	8	Unmodified	_VLRWAPFF_					0	0	0		AVPR2|p.C283R|1|0.08|ENSG00000126895|chrX:153906353-153906353|T/C|missense_variant	AVPR2|p.C283R|1|0.08|ENSG00000126895|chrX:153906353-153906353|T/C|missense_variant	AVPR2|p.C283R|1|0.08|ENSG00000126895|chrX:153906353-153906353|T/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.8098754882812	2	518.292362	1034.57017	0.687	0.00035607	-1.9149	-0.00099247	-1.2279	-0.0006364	518.2904416534158	110.25	0.73611	109.11	108.82	109.56	-1.1444					21	13	2	0	0	0	0.028476	1	7925	7925		14.664	0	1	38986			61174	137	50481	50526	66992	66992					0.05426975756313368
VLRWWRAGQG	10	Unmodified	_VLRWWRAGQG_					0	0	0			REV__ENST00000460501.2_1_X:48957923-48958031:-|nuORF	REV__ENST00000460501.2_1_X:48957923-48958031:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	410.22821044921875	3	410.228113	1227.66251	1.4103	0.00057854	-1.8859	-0.00077364	-0.47561	-0.00019511	410.2273104732907	37.909	1.7383	35.016	34.541	36.28	-2.8925					77	34	4	0	0	0	0.73063	1	1426	1426		27.047	0.98393	1	312400	+		61175	26084	50482	50527	66993	66993					0.05778453822540541
VLRYRHKRL	9	Unmodified	_VLRYRHKRL_					0	0	0		ENST00000366591.4_1_1:236305922-236343463:+|nuORF;ENSG00000077585|ENST00000366592|GPR137B	ENST00000366591.4_1_1:236305922-236343463:+|nuORF	ENST00000366591.4_1_1:236305922-236343463:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.2625732421875	3	414.263157	1239.76764	0.073708	3.0534E-05	-3.1109	-0.0012887	-3.0372	-0.0012582	414.2618187943835	20.482	1.3692	19.143	18.851	20.22	-1.3386					77	27	4	0	0	0	0.61365	1	81	81		30.318	0	1	397370			61176	1577	50483	50528	66994	66994					0.1573499501898823
VLSCPWPLPL	10	Unmodified	_VLSCPWPLPL_					0	0	0			REV__ENST00000394311.6_1_X:131520811-131524888:-|nuORF	REV__ENST00000394311.6_1_X:131520811-131524888:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	562.8148803710938	2	562.81227	1123.60999	1.7169	0.0009663	2.3913	0.0013458	4.1082	0.0023121	562.8135640109886	143.44	1.6242	143.44	143.02	144.64	0					83	32	4	0	0	0	0.43592	1	16741	16741		63.306	11.971	1	3982000	+		61177	25296	50484	50529	66995	66995					0.053127346447354284
VLSDVPILN	9	Unmodified	_VLSDVPILN_					0	0	0			REV__ENSG00000196407|ENST00000368817|THEM5	REV__ENSG00000196407|ENST00000368817|THEM5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.27325439453125	2	485.2844	968.554247	-0.83579	-0.0004056	3.7511	0.0018204	2.9153	0.0014148	485.2862736632148	53.434	0.30821	50.226	49.995	50.303	-3.208					9	5	2	0	0	0	0.027462	1	3231	3231		29.15	0	1	216730	+		61178	22823	50485	50530	66996	66996					0.06871224728763536
VLSEPHPLVL	10	Unmodified	_VLSEPHPLVL_					0	0	0		ENST00000533428.2_1_15:97300531-97301611:+|nuORF	ENST00000533428.2_1_15:97300531-97301611:+|nuORF	ENST00000533428.2_1_15:97300531-97301611:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	552.3281860351562	2	552.326599	1102.63865	0.085244	4.7082E-05	0.76512	0.0004226	0.85037	0.00046968	552.3269063152999	105.34	0.92335	105.34	105.09	106.01	0					52	20	4	0	0	0	0.56767	1	11825	11825		45.952	0	1	1828200			61179	13339	50486	50531	66997	66997					0.09143175545523263
VLSFDAILK	9	Unmodified	_VLSFDAILK_					0	0	0			REV__tr|A0A7D6VPL4|A0A7D6VPL4_9CLOTDUF2461domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17310PE=4SV=1	REV__tr|A0A7D6VPL4|A0A7D6VPL4_9CLOTDUF2461domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17310PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	503.2812194824219	2	503.302593	1004.59063	1.2913	0.00064992	-2.4007	-0.0012083	-1.1094	-0.00055834	503.3010657699775	112.51	1.1321	111.44	110.87	112.01	-1.0753					42	22	3	0	0	0	0.027441	1	8227	8227		58.782	21.623	1	90524	+		61180	31258	50487	50532	66998	66998					0.08852101625461728
VLSFNYVI	8	Unmodified	_VLSFNYVI_					0	0	0			REV__ENST00000496932.1_1_1:43830832-43833598:-|nuORF	REV__ENST00000496932.1_1_1:43830832-43833598:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	477.76702880859375	2	477.768386	953.522219	0.045401	2.1691E-05	-4.2715	-0.0020408	-4.2261	-0.0020191	477.7661495550662	88.014	1.3475	85.883	85.597	86.944	-2.1309					74	26	4	0	0	0	0.50674	1	5341	5341		76.847	0	1	814090	+		61181	16813	50488	50533	66999	66999					0.04359857045608351
VLSGDVQPNT	10	Unmodified	_VLSGDVQPNT_					0	0	0		tr|A0A7D6W0A9|A0A7D6W0A9_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22660PE=4SV=1	tr|A0A7D6W0A9|A0A7D6W0A9_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22660PE=4SV=1	tr|A0A7D6W0A9|A0A7D6W0A9_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22660PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.7510986328125	2	515.264196	1028.51384	0.7358	0.00037913	3.0712	0.0015825	3.807	0.0019616	515.2657339922158	131.5	0.73276	131.27	131.05	131.78	-0.22696					25	14	2	0	0	0	0.02676	1	12945	12945		58.23	19.424	1	43758			61182	35375	50489	50534	67000	67000					0.0007225833833217621
VLSGDVQPNT	10	Unmodified	_VLSGDVQPNT_					0	0	0		tr|A0A7D6W0A9|A0A7D6W0A9_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22660PE=4SV=1	tr|A0A7D6W0A9|A0A7D6W0A9_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22660PE=4SV=1	tr|A0A7D6W0A9|A0A7D6W0A9_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22660PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	515.264196	1028.51384	1.0427	0.00053726	5.705	0.0029396	6.7477	0.0034769	515.2671067574715	131.16	0.28328	131.16	131.01	131.29	0	0.0535	0.0031963	NaN	58.23	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23693			61183	35375	50489	50534							0.0007225833833217621
VLSGIFFVE	9	Unmodified	_VLSGIFFVE_					0	0	0			REV__ENST00000553737.5_1_12:56094921-56109781:-|nuORF	REV__ENST00000553737.5_1_12:56094921-56109781:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.77874755859375	2	505.781493	1009.54843	-6.8358	-0.0034574	1.0856	0.00054907	-5.7502	-0.0029083	505.7818207814875	162	0.56514	160.38	160.18	160.75	-1.6239					25	13	2	0	0	0	0.59983	1	16029	16029		31.955	10.253	1	23727	+		61184	27518	50490	50535	67001	67001					0.044041262170935624
VLSGLHMMEGQ	11	Oxidation (M)	_VLSGLHMM(Oxidation (M))EGQ_		VLSGLHM(0.003)M(0.997)EGQ		VLSGLHM(-25)M(25)EGQ	0	0	1		nc|ENSG00000159322|Q9BRR6-3|ADPGK;ENST00000569534.5_1_15:73044684-73076051:-|nuORF;ENST00000567941.5_1_15:73044684-73075795:-|nuORF;nc|ENSG00000159322|Q9BRR6-2|ADPGK;ENSG00000159322|ENST00000456471|ADPGK;ENST00000562621.1_1_15:73048204-73048867:-|nuORF;nc|ENSG00000159322|Q9BRR6-5|ADPGK	nc|ENSG00000159322|Q9BRR6-3|ADPGK;nc|ENSG00000159322|Q9BRR6-5|ADPGK	nc|ENSG00000159322|Q9BRR6-3|ADPGK	MULTI-MSMS	OvCa99_classI_Rep5	1	609.79345703125	2	609.286291	1216.55803	1.3908	0.00084742	2.1979	0.0013392	3.5888	0.0021866	609.2878342887697	150.12	1.9884	150.12	149.31	151.3	0					79	39	3	0	0	0	0.60323	1	17523	17523		44.377	6.5657	2	143700			61185	6003;15124	50491	50536	67002	67002		190			-0.041587968313478996
VLSGLKKG	8	Unmodified	_VLSGLKKG_					0	0	0			REV__ENSG00000102452|ENST00000251127|NALCN	REV__ENSG00000102452|ENST00000251127|NALCN	MULTI-MSMS	OvCa9_classI_Rep2	2	401.2618408203125	2	401.263271	800.511988	1.296	0.00052003	-4.2066	-0.001688	-2.9106	-0.0011679	401.26147123184654	136.26	1.7613	136.04	135.22	136.99	-0.22696					76	35	3	0	0	0	0.74394	1	13522	13522		13.775	0	1	533840	+		61186	17557	50492	50537	67003	67003					0.10375294111042876
VLSHLKTTS	9	Unmodified	_VLSHLKTTS_					0	0	0		POF1B|p.P77H|1|0.08|ENSG00000124429|chrX:85379225-85379225|G/T|missense_variant	POF1B|p.P77H|1|0.08|ENSG00000124429|chrX:85379225-85379225|G/T|missense_variant	POF1B|p.P77H|1|0.08|ENSG00000124429|chrX:85379225-85379225|G/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.81573486328125	2	493.287474	984.560395	0.71954	0.00035494	-1.085	-0.0005352	-0.36542	-0.00018026	493.28678223141844	111	1.1472	109.9	109.6	110.75	-1.1038					46	22	3	0	0	0	0.027462	1	8017	8017		23.042	6.5693	1	143110			61187	15510	50493	50538	67004	67004					0.06749742960278127
VLSHTLSGGQ	10	Unmodified	_VLSHTLSGGQ_					0	0	0			REV__ENST00000531636.5_1_11:125448863-125448914:+|nuORF	REV__ENST00000531636.5_1_11:125448863-125448914:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	499.76513671875	2	499.766906	997.519259	0.42625	0.00021303	-4.146	-0.002072	-3.7197	-0.001859	499.76512722989173	126.31	4.05	126.07	125.5	129.55	-0.2359					192	81	3	0	0	0	0.42962	2	12388	12388;12424		64.207	6.396	1	11682000	+		61188	27218	50494	50539	67005;67006	67005					0.020399819208250847
VLSIYLFLI	9	Unmodified	_VLSIYLFLI_					0	0	0			REV__tr|A0A7D6VUB4|A0A7D6VUB4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06520PE=4SV=1	REV__tr|A0A7D6VUB4|A0A7D6VUB4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06520PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.8203735351562	2	540.838811	1079.66307	-5.5876	-0.003022	1.4999	0.00081119	-4.0877	-0.0022108	540.8397083872856	156.31	1.1892	154.82	154.16	155.35	-1.4911					55	37	2	0	0	0	0.027462	1	15465	15465		13.775	0	1	12782	+		61189	31665	50495	50540	67007	67007					0.1264243569903556
VLSKRFKS	8	Unmodified	_VLSKRFKS_					0	0	0			REV__ENSG00000104549|ENST00000265896|SQLE	REV__ENSG00000104549|ENST00000265896|SQLE	MULTI-SECPEP	OvCa9_classI_Rep4_	4	482.285400390625	2	482.800552	963.58655	0.50199	0.00024236	-2.0149	-0.00097279	-1.5129	-0.00073043	482.79941346621825	89.834	0.90451	87.259	87	87.904	-2.575					27	17	2	0	0	0	0.028476	1	7729	7729		21.96	0	1	55131	+		61190	17670	50496	50541	67008	67008					0.10330056922418862
VLSLLLLCVF	10	Unmodified	_VLSLLLLCVF_					0	0	0		ENST00000546516.5_1_16:712885-713302:+|nuORF	ENST00000546516.5_1_16:712885-713302:+|nuORF	ENST00000546516.5_1_16:712885-713302:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	560.3399047851562	2	560.345946	1118.67734	-7.144	-0.0040031	-2.9806	-0.0016702	-10.125	-0.0056733	560.3441648343594	161.4	2.0053	160.03	159.58	161.59	-1.3692					105	41	5	0	0	0	0.76627	1	14056	14056		23.042	1.0826	1	475740			61191	13535	50497	50542	67009	67009					0.12274764855669673
VLSLPHMV	8	Unmodified	_VLSLPHMV_					0	0	0		nc|ENSG00000168903|Q6UXE8-2|BTNL3	nc|ENSG00000168903|Q6UXE8-2|BTNL3	nc|ENSG00000168903|Q6UXE8-2|BTNL3	MULTI-MSMS	OvCa9_classI_Rep4_	4	448.25909423828125	2	448.257131	894.499709	0.30648	0.00013738	4.1631	0.0018661	4.4696	0.0020035	448.2589237443711	143.15	0.90617	141.71	141.41	142.31	-1.4427					48	17	3	0	0	0	0.73288	1	14000	14000		35.201	7.3185	1	179280			61192	15169	50498	50543	67010	67010					0.04823934376338457
VLSLPLLL	8	Unmodified	_VLSLPLLL_					0	0	0		ENSG00000220008|ENST00000698372|LINGO3	ENSG00000220008|ENST00000698372|LINGO3	ENSG00000220008|ENST00000698372|LINGO3	MULTI-SECPEP	OvCa9_classI_Rep3	3	434.2874755859375	2	434.299322	866.584091	-0.63053	-0.00027384	0.59132	0.00025681	-0.039215	-1.7031E-05	434.29727786583453	84.94	0.29394	82.72	82.498	82.792	-2.2204					10	5	3	0	0	0	0.028476	1	4944	4944		23.037	0	1	37690			61193	9224	50499	50544	67011	67011					0.14546208464753363
VLSLVSRYVKT	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))VLSLVSRYVKT_					1	0	0		ENST00000372981.1_1_X:99941666-99941798:-|nuORF	ENST00000372981.1_1_X:99941666-99941798:-|nuORF	ENST00000372981.1_1_X:99941666-99941798:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	436.2608947753906	3	436.262489	1305.76564	0.012007	5.2382E-06	-2.4715	-0.0010782	-2.4594	-0.001073	436.2615773396781	64.106	2.7222	61.381	60.915	63.637	-2.7245					177	52	5	0	0	0	0.49333	1	4893	4893		54.343	7.1157	1	5858100			61194	10993	50500	50545	67012	67012					0.12498476699829553
VLSMMLNSTS	10	Oxidation (M)	_VLSM(Oxidation (M))MLNSTS_		VLSM(0.837)M(0.163)LNSTS		VLSM(7.1)M(-7.1)LNSTS	0	0	1		ENST00000333942.10_1_17:30519265-30520176:+|nuORF	ENST00000333942.10_1_17:30519265-30520176:+|nuORF	ENST00000333942.10_1_17:30519265-30520176:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	549.7642822265625	2	549.762117	1097.50968	0.74232	0.0004081	1.6578	0.00091137	2.4001	0.0013195	549.7629575946962	154.06	4.3631	154.06	151.88	156.24	0					128	91	2	0	0	0	0.49558	1	17873	17873		54.776	14.204	2	70978			61195	10472	50501	50546	67013	67013		297			-0.0351729047124536
VLSMRRLR	8	Unmodified	_VLSMRRLR_					0	0	0			REV__nc|ENSG00000068976|P11217-2|PYGM	REV__nc|ENSG00000068976|P11217-2|PYGM	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.7631225585938	2	515.818753	1029.62295	-0.58561	-0.00030207	-1.6551	-0.00085372	-2.2407	-0.0011558	515.8174247881379	60.032	0.19786	60.032	59.918	60.116	0					7	4	2	0	0	0	0.028476	1	5221	5221		25.45	7.1258	1	219970	+		61196	16863	50502	50547	67014	67014					0.10932610547479271
VLSQKVIAH	9	Unmodified	_VLSQKVIAH_					0	0	0		ENSG00000136371|ENST00000258874|MTHFS	ENSG00000136371|ENST00000258874|MTHFS	ENSG00000136371|ENST00000258874|MTHFS	MSMS	OvCa9_classI_Rep4_	4	497.8069152832031	2	497.805834	993.597115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	50.448	1	47.306	46.806	47.806	-3.1416								0	0	0	0.054374	1	2903	2903		77.318	11.852	1				61197	4485	50503	50548	67015	67015					0.1000603957684234
VLSRLSLFP	9	Unmodified	_VLSRLSLFP_					0	0	0		nc|ENSG00000151553|Q5W0V3-2|FHIP2A;ENSG00000151553|ENST00000369248|FHIP2A	nc|ENSG00000151553|Q5W0V3-2|FHIP2A	nc|ENSG00000151553|Q5W0V3-2|FHIP2A	MULTI-MSMS	OvCa99_classI_Rep5	1	516.3175659179688	2	516.316035	1030.61752	2.691	0.0013894	-0.65228	-0.00033678	2.0387	0.0010526	516.3155984833777	102.36	0.93449	102.36	102.08	103.01	0					70	21	5	0	0	0	0.55011	1	11441	11441		37.812	0	1	12684000			61198	5563	50504	50549	67016	67016					0.1034321023666962
VLSSAPLLTHL	11	Unmodified	_VLSSAPLLTHL_					0	0	0			REV__ENST00000392547.6_1_2:175427025-175427217:-|nuORF	REV__ENST00000392547.6_1_2:175427025-175427217:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8436279296875	2	575.845156	1149.67576	-1.5734	-0.00090602	-1.7064	-0.00098265	-3.2798	-0.0018887	575.8439449675558	145.55	4.7888	144.12	142.78	147.57	-1.4357					360	93	6	0	0	0	0.62497	1	14228	14228		42.396	3.1433	1	565210	+		61199	25263	50505	50550	67017	67017					0.10690847091291289
VLSTLLTVN	9	Unmodified	_VLSTLLTVN_					0	0	0			REV__TFAP2D|p.A283E|1|0.08|ENSG00000008197|chr6:50729277-50729277|C/A|missense_variant	REV__TFAP2D|p.A283E|1|0.08|ENSG00000008197|chr6:50729277-50729277|C/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.75115966796875	2	480.292225	958.569897	-2.0664	-0.0009925	-0.18953	-9.1032E-05	-2.256	-0.0010835	480.29046736187684	49.377	0.36068	46.235	46.043	46.403	-3.1416					10	6	2	0	0	0	0.027462	1	2779	2779		37.159	3.6435	1	7599.4	+		61200	16446	50506	50551	67018	67018					0.08895511245793841
VLSTTLRDPPL	11	Unmodified	_VLSTTLRDPPL_					0	0	0		ENST00000343505.9_2_6:138768140-138794549:-|nuORF	ENST00000343505.9_2_6:138768140-138794549:-|nuORF	ENST00000343505.9_2_6:138768140-138794549:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	404.5707092285156	3	404.571322	1210.69214	0.36741	0.00014864	-2.4416	-0.00098779	-2.0742	-0.00083915	404.5702198985251	49.813	1.7345	47.045	46.614	48.348	-2.768					90	34	4	0	0	0	0.69735	1	3199	3199		30.569	3.5215	1	257950			61201	10600	50507	50552	67019	67019					0.09521928257390755
VLSVALFAFS	10	Unmodified	_VLSVALFAFS_					0	0	0			REV__nc|ENSG00000109572|P51790-4|CLCN3;REV__nc|ENSG00000109572|P51790-2|CLCN3	REV__nc|ENSG00000109572|P51790-2|CLCN3	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.7720336914062	2	527.302593	1052.59063	0.57171	0.00030147	1.8133	0.00095614	2.385	0.0012576	527.3029202026963	151.74	0.18292	151.74	151.6	151.79	0					6	3	2	0	0	0	0.027056	1	17755	17755		20.947	0	1	29586	+		61202	17934;28790	50508	50553	67020	67020					0.06644101625443
VLSVMFGKPGL	11	Unmodified	_VLSVMFGKPGL_					0	0	0		ENST00000332647.5_1_X:92929206-92953480:+|nuORF	ENST00000332647.5_1_X:92929206-92953480:+|nuORF	ENST00000332647.5_1_X:92929206-92953480:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	574.3287353515625	2	574.330827	1146.6471	1.026	0.00058926	-1.7353	-0.00099665	-0.70933	-0.00040739	574.3296910290093	145.9	0.6991	145.9	145.68	146.38	0					31	13	3	0	0	0	0.52842	1	17056	17056		51.193	3.2771	1	231220			61203	10461	50509	50554	67021	67021					0.07964406190490081
VLSVRKVL	8	Unmodified	_VLSVRKVL_					0	0	0		ENST00000473380.1_1_X:11786546-11786591:+|nuORF	ENST00000473380.1_1_X:11786546-11786591:+|nuORF	ENST00000473380.1_1_X:11786546-11786591:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	457.3148498535156	2	457.313295	912.612037	0.011787	5.3902E-06	-0.14941	-6.8326E-05	-0.13762	-6.2936E-05	457.3132274150166	71.13	2.4399	71.13	70.877	73.317	0					162	60	5	0	0	0	0.66704	1	6874	6874		50.025	2.1089	1	56551000			61204	12408	50510	50555	67022	67022					0.1522353144483759
VLSYFLEQ	8	Unmodified	_VLSYFLEQ_					0	0	0		L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|332|3|anti-sense;L1PA8A_dup160|chr1:247133953-247136664:+|1.5135014545884105|0.4971293307696565|1.61|429.0|92|1|anti-sense;L1P3_dup682|chr3:196908842-196910335:+|1.1693758815815145|0.2885488685750818|2.02|428.0|43|1|anti-sense	L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|332|3|anti-sense	L1PA7_dup6474|chr8:106560725-106567124:+|1.632823151869906|0.1128517605864482|3.85|427.0|332|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.76544189453125	2	499.7633	997.512048	-1.053	-0.00052626	4.0977	0.0020479	3.0447	0.0015216	499.76572667649543	127.6	4.5409	126.16	125.39	129.93	-1.4357					197	90	5	0	0	0	0.64026	1	12286	12286		55.504	2.1528	1	12586000			61205	14643	50511	50556	67023	67023					0.01319249320374638
VLSYLFMIKQ	10	Unmodified	_VLSYLFMIKQ_					0	0	0			REV__nc|ENSG00000163357|Q5T197-2|DCST1	REV__nc|ENSG00000163357|Q5T197-2|DCST1	MULTI-SECPEP	OvCa9_classI_Rep2	2	414.5911560058594	3	414.570265	1240.68897	-0.2046	-8.4819E-05	0.36118	0.00014973	0.15658	6.4913E-05	414.5703277647207	33.336	0.40176	30.626	30.371	30.772	-2.7097					12	7	2	0	0	0	0.027233	1	1194	1194		27.047	1.9213	1	10666	+		61206	28966	50512	50557	67024	67024					0.07824961879009606
VLSYRRRYRWH	11	Unmodified	_VLSYRRRYRWH_					0	0	0			REV__ENST00000465608.1_1_10:99344097-99344382:+|nuORF	REV__ENST00000465608.1_1_10:99344097-99344382:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.27685546875	3	531.295409	1590.8644	-0.20849	-0.00011077	1.5806	0.00083979	1.3722	0.00072902	531.2979675392261	35.726	0.41893	35.726	35.52	35.939	0					15	8	3	0	0	0	0.026448	1	1844	1844		5.6988	4.3769	1	46240	+		61207	26172	50513	50558	67025	67025					0.09259937508090843
VLTAHDLEV	9	Unmodified	_VLTAHDLEV_					0	0	0			REV__ENST00000452475.5_1_7:72986280-72992879:-|nuORF	REV__ENST00000452475.5_1_7:72986280-72992879:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.8193359375	2	498.771657	995.528761	0.71625	0.00035725	0.011443	5.7073E-06	0.72769	0.00036295	498.7716804505034	140.05	0.56744	140.05	139.83	140.4	0					18	11	2	0	0	0	0.027462	1	16335	16335		24.203	0	1	43733	+		61208	17817	50514	50559	67026	67026					0.030817502063200664
VLTALGHCII	10	Unmodified	_VLTALGHCII_					0	0	0			REV__nc|ENSG00000145495|O60337-6|MARCHF6	REV__nc|ENSG00000145495|O60337-6|MARCHF6	MULTI-SECPEP	OvCa9_classI_Rep3	3	520.328125	2	520.30207	1038.58959	-0.27929	-0.00014531	-3.4586	-0.0017995	-3.7379	-0.0019448	520.300155328525	115.67	1.8276	114.63	114.31	116.13	-1.0414					56	36	2	0	0	0	0.026519	1	8633	8633		65.803	0	1	157780	+		61209	19965	50515	50560	67027	67027					0.07183563984926877
VLTATTLT	8	Unmodified	_VLTATTLT_					0	0	0			REV__CON__P0C1U8	REV__CON__P0C1U8	MULTI-SECPEP	OvCa99_classI_Rep5	1	409.5509338378906	2	410.244744	818.474934	3.5622	0.0014614	0.4593	0.00018842	4.0215	0.0016498	410.24475932984046	84.45	0.70289	84.45	84.22	84.923	0					38	16	3	0	0	0	0.028476	1	8872	8872		12.207	8.2216	1	1448900	+	+	61210	16192	50516	50561	67028	67028					0.058435777746126405
VLTAVEGTI	9	Unmodified	_VLTAVEGTI_					0	0	0		ENSG00000185164|ENST00000622306|NOMO2;ENSG00000103512|ENST00000287667|NOMO1;ENSG00000103226|ENST00000399336|NOMO3;nc|ENSG00000185164|Q5JPE7|NOMO2;nc|ENSG00000185164|Q5JPE7-3|NOMO2;ENST00000574894.1_1_16:16367711-16371421:+|nuORF	ENSG00000185164|ENST00000622306|NOMO2	ENSG00000185164|ENST00000622306|NOMO2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.771240234375	2	451.7633	901.512048	-0.25413	-0.00011481	2.0491	0.00092571	1.795	0.0008109	451.7649111477884	95.443	1.3063	92.974	92.21	93.516	-2.4685					40	25	2	0	0	0	0.027448	1	8382	8382		44.117	0	1	17518			61211	2296	50517	50562	67029	67029					0.057352493203779886
VLTEAGSPVKL	11	Unmodified	_VLTEAGSPVKL_					0	0	0		nc|ENSG00000124256|Q9H171-5|ZBP1;ENST00000480037.1_1_20:56191111-56195351:-|nuORF;ENST00000432548.2_1_20:56190212-56195528:-|nuORF;ENST00000461547.5_1_20:56191111-56191654:-|nuORF;nc|ENSG00000124256|Q9H171-6|ZBP1;nc|ENSG00000124256|Q9H171-3|ZBP1;nc|ENSG00000124256|Q9H171-4|ZBP1;ENSG00000124256|ENST00000371173|ZBP1;nc|ENSG00000124256|Q9H171-2|ZBP1	nc|ENSG00000124256|Q9H171-5|ZBP1	nc|ENSG00000124256|Q9H171-5|ZBP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.330810546875	2	557.329339	1112.64412	-0.031635	-1.7631E-05	-0.86807	-0.0004838	-0.8997	-0.00050143	557.3287360893569	82.001	2.0398	79.318	78.914	80.954	-2.6829					73	41	4	0	0	0	0.39237	1	6778	6778		61.691	2.9093	1	770810			61212	3642	50518	50563	67030	67030					0.0923085433732922
VLTFPEYI	8	Unmodified	_VLTFPEYI_					0	0	0		nc|ENSG00000152092|O14525-3|ASTN1;ENSG00000152092|ENST00000361833|ASTN1;nc|ENSG00000152092|O14525|ASTN1	nc|ENSG00000152092|O14525-3|ASTN1	nc|ENSG00000152092|O14525-3|ASTN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.7809753417969	2	491.268219	980.521884	-0.63815	-0.0003135	-1.911	-0.0009388	-2.5491	-0.0012523	491.2668263830275	55.427	1.1691	52.133	51.751	52.92	-3.2944					42	22	3	0	0	0	0.028476	1	3557	3557		19.36	0	1	130760			61213	5603	50519	50564	67031	67031					0.030844373257536972
VLTGFLHSPL	10	Unmodified	_VLTGFLHSPL_					0	0	0			REV__ENST00000264203.7_1_1:19665671-19665956:-|nuORF	REV__ENST00000264203.7_1_1:19665671-19665956:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.2855224609375	2	542.313492	1082.61243	0.41604	0.00022562	1.1574	0.00062765	1.5734	0.00085328	542.3130692409533	105.57	0.39009	105.57	105.36	105.75	0					11	8	2	0	0	0	0.027021	1	11881	11881		15.642	0	1	123590	+		61214	24013	50520	50565	67032	67032					0.07442906374035374
VLTGLSIRL	9	Unmodified	_VLTGLSIRL_					0	0	0		ENSG00000141858|ENST00000533683|SAMD1;nc|ENSG00000141858|Q6SPF0|SAMD1	ENSG00000141858|ENST00000533683|SAMD1	ENSG00000141858|ENST00000533683|SAMD1	MULTI-MSMS	OvCa99_classI_Rep5	1	486.3168640136719	2	486.316035	970.617516	0.18206	8.8536E-05	2.1402	0.0010408	2.3223	0.0011294	486.3169693319367	114.37	0.77802	114.37	114.15	114.93	0					35	16	3	0	0	0	0.075543	1	13054	13054		104.06	13.687	1	544850			61215	4942	50521	50566	67033	67033					0.13103210236658924
VLTKGEGTKME	11	Unmodified	_VLTKGEGTKME_					0	0	0			REV__tr|A0A7D6VNS2|A0A7D6VNS2_9CLOTProteintranslocasesubunitSecAOS=ClostridiumintestinaleOX=36845GN=secAPE=3SV=1	REV__tr|A0A7D6VNS2|A0A7D6VNS2_9CLOTProteintranslocasesubunitSecAOS=ClostridiumintestinaleOX=36845GN=secAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	596.8150634765625	2	596.815738	1191.61692	3.1335	0.0018701	-2.1449	-0.0012801	0.98864	0.00059003	596.8143723057162	57.305	2.9299	54.154	53.228	56.158	-3.1504					108	83	2	0	0	0	0.72491	1	1696	1696		16.717	1.0756	1	40554	+		61216	31203	50522	50567	67034	67034					0.02878002734655638
VLTLKPTKN	9	Unmodified	_VLTLKPTKN_					0	0	0		ENST00000544191.1_1_12:22826493-22826559:+|nuORF	ENST00000544191.1_1_12:22826493-22826559:+|nuORF	ENST00000544191.1_1_12:22826493-22826559:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	507.3233947753906	2	507.321317	1012.62808	-2.1125	-0.0010717	-0.29678	-0.00015056	-2.4092	-0.0012223	507.3214530279846	104.27	0.93134	104.27	103.81	104.74	0					39	21	3	0	0	0	0.26076	1	11671	11671		67.494	5.3863	1	564180			61217	13503	50523	50568	67035	67035					0.1222719289107772
VLTTLIAGAL	10	Unmodified	_VLTTLIAGAL_					0	0	0		tr|A0A553SLM6|A0A553SLM6_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_20910PE=3SV=1	tr|A0A553SLM6|A0A553SLM6_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_20910PE=3SV=1	tr|A0A553SLM6|A0A553SLM6_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_20910PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.3110046386719	2	486.310418	970.606283	0.91435	0.00044466	1.4675	0.00071368	2.3819	0.0011583	486.31179030634246	123.42	1.603	122.39	122.15	123.75	-1.0377					64	30	3	0	0	0	0.56767	1	9520	9520		45.952	3.5558	1	196800			61218	33742	50524	50569	67036	67036					0.11980388142512766
VLTTVRPTAW	10	Unmodified	_VLTTVRPTAW_					0	0	0		ENST00000461783.7_3_6:155532388-155561841:+|nuORF	ENST00000461783.7_3_6:155532388-155561841:+|nuORF	ENST00000461783.7_3_6:155532388-155561841:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	572.3272705078125	2	572.329673	1142.64479	-0.3182	-0.00018212	-3.6212	-0.0020725	-3.9394	-0.0022547	572.3274499626856	39.245	1.8689	36.319	35.948	37.817	-2.9264					87	34	4	0	0	0	0.70152	1	1597	1597		30.318	1.1477	1	787270			61219	12187	50525	50570	67037	67037					0.07917693777039858
VLTVHCNN	8	Carbamidomethyl (C)	_VLTVHC(Carbamidomethyl (C))NN_	VLTVHC(1)NN		VLTVHC(94)NN		0	1	0			REV__ENST00000476766.5_1_10:102747125-102750779:+|nuORF	REV__ENST00000476766.5_1_10:102747125-102750779:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.7937316894531	2	478.734551	955.45455	0.10934	5.2346E-05	-3.5205	-0.0016854	-3.4112	-0.0016331	478.73268809071493	71.663	0.60995	71.663	71.267	71.877	0					22	14	2	0	0	0	0.028476	1	6886	6886		94.006	14.067	1	211250	+		61220	17859	50526	50571	67038	67038	197				-0.024959161568403943
VLTVLCHLI	9	Unmodified	_VLTVLCHLI_					0	0	0			REV__nc|ENSG00000133687|Q8IUR5-1|TMTC1	REV__nc|ENSG00000133687|Q8IUR5-1|TMTC1	MULTI-MSMS	OvCa9_classI_Rep2	2	505.8086853027344	2	505.806988	1009.59942	-0.42662	-0.00021579	3.4623	0.0017513	3.0357	0.0015355	505.8086512781618	72.909	1.6754	70.509	70.115	71.79	-2.3999					58	31	2	0	0	0	0.58665	1	5923	5923		33.516	0	1	489790	+		61221	19152	50527	50572	67039	67039					0.09500751990287881
VLVAELVGVFG	11	Unmodified	_VLVAELVGVFG_					0	0	0		ENST00000470216.1_1_2:37426847-37428252:+|nuORF;ENSG00000218739|ENST00000402297|CEBPZOS	ENST00000470216.1_1_2:37426847-37428252:+|nuORF	ENST00000470216.1_1_2:37426847-37428252:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.832763671875	2	551.828975	1101.6434	0.66152	0.00036504	0.31956	0.00017634	0.98107	0.00054138	551.8291885360787	32.876	1.2809	30.18	29.716	30.997	-2.6954					54	26	3	0	0	0	0.71929	1	790	790		23.042	6.5693	1	118130			61222	9219	50528	50573	67040	67040					0.09664059688270754
VLVATWKTK	9	Unmodified	_VLVATWKTK_					0	0	0			REV__tr|A0A553SGV0|A0A553SGV0_NIACISugarfermentationstimulationproteinhomologOS=NialliacirculansOX=1397GN=sfsAPE=3SV=1	REV__tr|A0A553SGV0|A0A553SGV0_NIACISugarfermentationstimulationproteinhomologOS=NialliacirculansOX=1397GN=sfsAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3245239257812	2	523.32386	1044.63317	0.90245	0.00047227	-1.0468	-0.00054782	-0.14435	-7.5541E-05	523.3231203427081	131.19	1.3271	130.96	130.65	131.98	-0.22696					57	26	3	0	0	0	0.55588	1	12940	12940		37.159	1.5408	1	194020	+		61223	29741	50529	50574	67041	67041					0.1126349675369056
VLVCVLPLCLL	11	Unmodified	_VLVCVLPLCLL_					0	0	0		ENST00000609516.1_1_1:38148756-38148999:-|nuORF	ENST00000609516.1_1_1:38148756-38148999:-|nuORF	ENST00000609516.1_1_1:38148756-38148999:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	592.8248901367188	2	592.860906	1183.70726	-1.0978	-0.00065084	-0.36858	-0.00021852	-1.4664	-0.00086935	592.8610926819579	96.446	0.25219	94.617	94.471	94.724	-1.8286					8	4	2	0	0	0	0.025652	1	6340	6340		31.955	0	1	10485			61224	14306	50530	50575	67042	67042					0.12275380529354152
VLVDRTIYI	9	Unmodified	_VLVDRTIYI_					0	0	0		ENSG00000132541|ENST00000254878|RIDA	ENSG00000132541|ENST00000254878|RIDA	ENSG00000132541|ENST00000254878|RIDA	MULTI-MSMS	OvCa9_classI_Rep2	2	546.3261108398438	2	546.326599	1090.63865	-0.59086	-0.0003228	-0.12835	-7.012E-05	-0.71921	-0.00039292	546.32648005172	104.57	2.5343	103.99	103.67	106.21	-0.57639					97	50	4	0	0	0	0.075543	3	9689	9684;9689;9695		104.06	29.802	1	511310			61225	4145	50531	50576	67043;67044;67045	67044					0.09695175545516577
VLVDRTIYI	9	Unmodified	_VLVDRTIYI_					0	0	0		ENSG00000132541|ENST00000254878|RIDA	ENSG00000132541|ENST00000254878|RIDA	ENSG00000132541|ENST00000254878|RIDA	MULTI-MSMS	OvCa9_classI_Rep3	3	546.3272094726562	2	546.326599	1090.63865	0.029432	1.608E-05	-0.58695	-0.00032067	-0.55752	-0.00030459	546.3261926719827	105.36	1.6666	104.02	103.73	105.4	-1.3482					74	31	4	0	0	0	0.13504	4	7385	7376;7380;7385;7392		87.696	21.893	1	592090			61226	4145	50531	50576	67046;67047;67048;67049	67048					0.09695175545516577
VLVDRTIYI	9	Unmodified	_VLVDRTIYI_					0	0	0		ENSG00000132541|ENST00000254878|RIDA	ENSG00000132541|ENST00000254878|RIDA	ENSG00000132541|ENST00000254878|RIDA	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.3280029296875	2	546.326599	1090.63865	-0.86646	-0.00047337	0.28307	0.00015465	-0.58339	-0.00031872	546.3266961035738	105.99	2.0074	103.98	103.55	105.55	-2.0161					87	38	4	0	0	0	0.1944	2	9630	9630;9638		77.318	24.381	1	594290			61227	4145	50531	50576	67050;67051	67050					0.09695175545516577
VLVEKLLL	8	Unmodified	_VLVEKLLL_					0	0	0			REV__ENST00000468127.1_1_7:137684448-137686451:-|nuORF	REV__ENST00000468127.1_1_7:137684448-137686451:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	463.81854248046875	2	463.817879	925.621205	1.1332	0.00052558	0.89992	0.0004174	2.0331	0.00094298	463.8181384508825	155.12	2.5278	155.12	154.47	157	0					119	49	3	0	0	0	0.61436	1	18154	18154		60.972	0.67798	1	188430	+		61228	26216	50532	50577	67052	67052					0.15541880010528075
VLVERGNHSKI	11	Unmodified	_VLVERGNHSKI_					0	0	0		nc|ENSG00000102007|Q04941-2|PLP2;ENSG00000102007|ENST00000376327|PLP2	nc|ENSG00000102007|Q04941-2|PLP2	nc|ENSG00000102007|Q04941-2|PLP2	MULTI-MSMS	OvCa9_classI_Rep2	2	626.3619384765625	2	626.362036	1250.70952	-2.9019	-0.0018177	2.9867	0.0018707	0.084754	5.3086E-05	626.3637485969008	35.53	1.0444	32.82	32.553	33.597	-2.7097					51	20	4	0	0	0	0.70142	1	1453	1453		29.17	21.977	1	112650			61229	2215	50533	50578	67053	67053					0.0941926858304214
VLVEVQFDEF	10	Unmodified	_VLVEVQFDEF_					0	0	0			REV__UBR1|p.D1423Vfs*11|1|0.83|ENSG00000159459|chr15:42976794-42976818|GAACTAACTGAAGAAGGCTGCAGAT/-|frameshift_variant	REV__UBR1|p.D1423Vfs*11|1|0.83|ENSG00000159459|chr15:42976794-42976818|GAACTAACTGAAGAAGGCTGCAGAT/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	409.5510559082031	3	408.876411	1223.6074	3.2913	0.0013457	0.53151	0.00021732	3.8228	0.0015631	408.8765907375586	83.993	0.46073	83.993	83.801	84.261	0					17	10	2	0	0	0	0.026956	1	8746	8746		25.126	5.8633	1	306190	+		61230	20617	50534	50579	67054	67054					0.0045455772076365974
VLVFCSKIM	9	Unmodified	_VLVFCSKIM_					0	0	0		nc|ENSG00000204920|Q12901-2|ZNF155	nc|ENSG00000204920|Q12901-2|ZNF155	nc|ENSG00000204920|Q12901-2|ZNF155	MULTI-MSMS	OvCa99_classI_Rep5	1	520.2947998046875	2	520.287574	1038.56059	-0.37765	-0.00019649	3.5673	0.001856	3.1896	0.0016595	520.289331661458	57.259	1.4918	57.259	56.788	58.28	0					85	34	4	0	0	0	0.13482	1	4817	4817		87.754	15.877	1	13614000			61231	15273	50535	50580	67055	67055					0.042857033642576425
VLVFLSNML	9	Unmodified	_VLVFLSNML_					0	0	0			REV__ENST00000462770.5_1_3:133661447-133748739:-|nuORF	REV__ENST00000462770.5_1_3:133661447-133748739:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.781005859375	2	518.298996	1034.58344	2.0594	0.0010674	-1.29	-0.00066859	0.7694	0.00039878	518.2972686164137	107.5	0.92467	107.5	107.14	108.07	0					31	21	3	0	0	0	0.027462	1	12092	12092		33.516	16.151	1	709640	+		61232	21844	50536	50581	67056	67056					0.06753045753384868
VLVFNVTDADD	11	Unmodified	_VLVFNVTDADD_					0	0	0		nc|ENSG00000196159|Q6V0I7-3|FAT4;nc|ENSG00000196159|Q6V0I7|FAT4;ENSG00000196159|ENST00000394329|FAT4;nc|ENSG00000196159|Q6V0I7-2|FAT4;FAT4|p.I3243Efs*10|1|0.29|ENSG00000196159|chr4:125450742-125450743|-/GAAAA|frameshift_variant;FAT4|p.D3244Lfs*13|1|0.23|ENSG00000196159|chr4:125450744-125450745|-/ACTTACTGTTTCGGCAA|frameshift_variant	nc|ENSG00000196159|Q6V0I7-3|FAT4	nc|ENSG00000196159|Q6V0I7-3|FAT4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	603.7778930664062	2	604.295693	1206.57683	0.64484	0.00038968	1.7526	0.0010591	2.3974	0.0014487	604.7997032007198	102.51	0.26332	100.31	100.1	100.36	-2.1994					5	4	2	0	0	0	0.025861	1	9209	9209		30.318	2.2362	1	6546.3			61233	8571	50537	50582	67057	67057					-0.018192206642879682
VLVGCFALLH	10	Unmodified	_VLVGCFALLH_					0	0	0			REV__ENST00000302926.6_1_17:7322687-7322795:+|nuORF	REV__ENST00000302926.6_1_17:7322687-7322795:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.3485107421875	2	536.304613	1070.59467	1.9565	0.0010493	0.12222	6.5545E-05	2.0788	0.0011148	536.3058581510434	134.25	0.3307	134.25	134.01	134.34	0					8	6	2	0	0	0	0.027147	1	15612	15612		26.796	0	1	37145	+		61234	24267	50538	50583	67058	67058					0.0621986784751698
VLVIILTWV	9	Unmodified	_VLVIILTWV_					0	0	0			REV__tr|A0A553SSL0|A0A553SSL0_NIACIPLDc_Ndomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03325PE=4SV=1	REV__tr|A0A553SSL0|A0A553SSL0_NIACIPLDc_Ndomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03325PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.3221435546875	2	528.346803	1054.67905	-0.030922	-1.6338E-05	-3.2106	-0.0016963	-3.2415	-0.0017126	528.3451321238758	130.6	0.79169	129.48	129.27	130.06	-1.1215					27	15	2	0	0	0	0.027462	1	10358	10358		12.959	0	1	23277	+		61235	30846	50539	50584	67059	67059					0.15390141935904467
VLVKAVNPSL	10	Unmodified	_VLVKAVNPSL_					0	0	0			REV__tr|A0A7D6W422|A0A7D6W422_9CLOTHydroxylaminereductaseOS=ClostridiumintestinaleOX=36845GN=hcpPE=3SV=1	REV__tr|A0A7D6W422|A0A7D6W422_9CLOTHydroxylaminereductaseOS=ClostridiumintestinaleOX=36845GN=hcpPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	520.3284301757812	2	520.329142	1038.64373	-0.29574	-0.00015388	-0.27656	-0.0001439	-0.57231	-0.00029779	520.3288824399598	115.77	1.6292	114.72	114.06	115.69	-1.0414					54	32	2	0	0	0	0.28845	1	8614	8614		82.241	29.941	1	448460	+		61236	31931	50540	50585	67060	67060					0.12595479408128085
VLVKTELAL	9	Unmodified	_VLVKTELAL_					0	0	0			REV__ENST00000409926.2_1_22:25083578-25083761:+|nuORF	REV__ENST00000409926.2_1_22:25083578-25083761:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.8152160644531	2	493.318243	984.621933	0.59611	0.00029407	-0.0053179	-2.6234E-06	0.59079	0.00029145	493.31817175075986	108.77	1.4349	108.54	108.17	109.61	-0.22498					39	28	2	0	0	0	0.027462	1	10312	10312		20.947	0	1	21639	+		61237	25486	50541	50586	67061	67061					0.12900674659545075
VLVKVKAKD	9	Unmodified	_VLVKVKAKD_					0	0	0			REV__tr|A0A553SHC3|A0A553SHC3_NIACITranscriptiontermination/antiterminationproteinNusGOS=NialliacirculansOX=1397GN=nusGPE=3SV=1	REV__tr|A0A553SHC3|A0A553SHC3_NIACITranscriptiontermination/antiterminationproteinNusGOS=NialliacirculansOX=1397GN=nusGPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.3315124511719	2	500.331685	998.648816	0.60553	0.00030297	-0.78338	-0.00039195	-0.17785	-8.8985E-05	500.3310623628908	37.044	1.0973	34.151	33.844	34.941	-2.8925					45	21	3	0	0	0	0.56889	1	1325	1325		35.618	0	1	191230	+		61238	29790	50542	50587	67062	67062					0.1494378327074628
VLVKVKAKD	9	Unmodified	_VLVKVKAKD_					0	0	0			REV__tr|A0A553SHC3|A0A553SHC3_NIACITranscriptiontermination/antiterminationproteinNusGOS=NialliacirculansOX=1397GN=nusGPE=3SV=1	REV__tr|A0A553SHC3|A0A553SHC3_NIACITranscriptiontermination/antiterminationproteinNusGOS=NialliacirculansOX=1397GN=nusGPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	500.331685	998.648816	-2.9687	-0.0014854	2.9538	0.0014779	-0.014947	-7.4786E-06	500.3328425884962	36.842	0.73981	34.132	33.942	34.682	-2.7097	-0.0096618	0.002352	NaN	35.618	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48196	+		61239	29790	50542	50587							0.1494378327074628
VLVLLPLVPGM	11	Unmodified	_VLVLLPLVPGM_					0	0	0			REV__CYP4F22|p.F349Lfs*21|1|0.04|ENSG00000171954|chr19:15544190-15544190|C/-|frameshift_variant	REV__CYP4F22|p.F349Lfs*21|1|0.04|ENSG00000171954|chr19:15544190-15544190|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.8516845703125	2	575.867046	1149.71954	-0.76369	-0.00043978	-0.81733	-0.00047067	-1.581	-0.00091046	575.8665353244965	89.158	0.38809	86.555	86.385	86.773	-2.6027					12	7	2	0	0	0	0.026108	1	7644	7644		24.203	21.044	1	89730	+		61240	16263	50543	50588	67063	67063					0.1506674026404653
VLVLLTTNTVV	11	Unmodified	_VLVLLTTNTVV_					0	0	0		ENST00000547095.5_1_12:62864501-62986526:+|nuORF;nc|ENSG00000061987|Q7Z3U7-2|MON2;nc|ENSG00000061987|Q7Z3U7-6|MON2;nc|ENSG00000061987|Q7Z3U7-5|MON2;ENSG00000061987|ENST00000393630|MON2	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	ENST00000547095.5_1_12:62864501-62986526:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.3701782226562	2	586.368464	1170.72238	-0.81014	-0.00047504	1.6526	0.00096906	0.8425	0.00049402	586.3692629340027	94.416	2.9527	91.947	91.666	94.618	-2.4685					167	58	5	0	0	0	0.60323	1	8339	8339		44.377	6.5657	1	1387500			61241	13545	50544	50589	67064	67064					0.14384286922540923
VLVLNRGVV	9	Unmodified	_VLVLNRGVV_					0	0	0			REV__ENSG00000180974|ENST00000641726|OR52E4	REV__ENSG00000180974|ENST00000641726|OR52E4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.775146484375	2	484.816202	967.617851	-0.95654	-0.00046374	-2.5136	-0.0012186	-3.4701	-0.0016824	484.81685139129746	92.845	0.15062	90.337	90.262	90.412	-2.5072					4	2	2	0	0	0	0.027462	1	8082	8082		25.45	7.1258	1	10973	+		61242	22208	50545	50590	67065	67065					0.1327462995652695
VLVLQRRK	8	Unmodified	_VLVLQRRK_					0	0	0		ENST00000332858.10_1_12:49523953-49524016:-|nuORF	ENST00000332858.10_1_12:49523953-49524016:-|nuORF	ENST00000332858.10_1_12:49523953-49524016:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.7938537597656	2	506.342918	1010.67128	-0.57523	-0.00029127	0.20038	0.00010146	-0.37485	-0.0001898	506.3429483778278	48.209	0.71509	45.101	44.838	45.553	-3.1077					25	13	2	0	0	0	0.028476	1	2685	2685		40.573	8.6178	1	50872			61243	10464	50546	50591	67066	67066					0.16637427459022547
VLVLSVVFLL	10	Unmodified	_VLVLSVVFLL_					0	0	0			REV__L1MA6_dup4553|chr14:32965001-32966588:+|1.0811544242595916|0.0860524180403581|3.65|423.0|72|1|anti-sense	REV__L1MA6_dup4553|chr14:32965001-32966588:+|1.0811544242595916|0.0860524180403581|3.65|423.0|72|1|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	551.369873046875	2	551.367736	1100.72092	1.3931	0.00076813	-3.0245	-0.0016676	-1.6314	-0.00089949	551.3666350328323	118.87	0.75572	118.87	118.49	119.24	0					23	15	2	0	0	0	0.69986	1	13636	13636		30.504	7.4612	1	94667	+		61244	28402	50547	50592	67067	67067					0.17458697624465458
VLVNKMVVMP	10	2 Oxidation (M)	_VLVNKM(Oxidation (M))VVM(Oxidation (M))P_		VLVNKM(1)VVM(1)P		VLVNKM(48)VVM(48)P	0	0	2			REV__ENSG00000198894|ENST00000361786|CIPC	REV__ENSG00000198894|ENST00000361786|CIPC	MULTI-MSMS	OvCa9_classI_Rep4_	4	581.3257446289062	2	581.322145	1160.62974	-1.145	-0.00066559	4.0717	0.002367	2.9268	0.0017014	581.3243833721342	101.53	1.4228	99.263	98.974	100.4	-2.2665					81	27	4	0	0	0	0.55145	1	9137	9137		47.916	8.6628	1	357890	+		61245	23088	50548	50593	67068	67068		538;539			0.055847425931915495
VLVQDFYI	8	Unmodified	_VLVQDFYI_					0	0	0			REV__ENSG00000102924|ENST00000219197|CBLN1	REV__ENSG00000102924|ENST00000219197|CBLN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.7723693847656	2	498.773668	995.532783	-1.2541	-0.00062552	-2.7747	-0.0013839	-4.0288	-0.0020095	498.77187921749646	71.734	1.3677	68.278	67.825	69.193	-3.4563					81	27	5	0	0	0	0.59148	1	5475	5475		65.803	2.2693	1	587260	+		61246	17582	50549	50594	67069	67069					0.03483839700038516
VLVQFAAATT	10	Unmodified	_VLVQFAAATT_					0	0	0			REV__ENSG00000091137|ENST00000644269|SLC26A4	REV__ENSG00000091137|ENST00000644269|SLC26A4	MULTI-SECPEP	OvCa9_classI_Rep2	2	509.8049011230469	2	510.78985	1019.56515	0.25289	0.00012917	-0.40332	-0.00020601	-0.15043	-7.684E-05	510.78947678508734	111.44	1.1328	111.3	110.68	111.82	-0.13961					39	22	2	0	0	0	0.026752	1	10522	10522		27.882	5.9224	1	60358	+		61247	17243	50550	50595	67070	67070					0.0561462710302294
VLVQKVVTT	9	Unmodified	_VLVQKVVTT_					0	0	0		ENSG00000164080|ENST00000684192|RAD54L2;ENST00000461680.1_1_3:51673299-51697433:+|nuORF;ENST00000487093.5_1_3:51669772-51697433:+|nuORF	ENSG00000164080|ENST00000684192|RAD54L2	ENSG00000164080|ENST00000684192|RAD54L2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.7812805175781	2	493.815867	985.617182	-0.77375	-0.00038209	0.61312	0.00030277	-0.16063	-7.9321E-05	493.8159950008902	66.144	1.3683	62.654	62.272	63.64	-3.4902					45	27	3	0	0	0	0.027462	1	4761	4761		24.203	1.1603	1	73346			61248	6404	50551	50596	67071	67071					0.12379790516808953
VLVQSGLTIA	10	Unmodified	_VLVQSGLTIA_					0	0	0		ENSG00000107611|ENST00000377833|CUBN;CUBN|p.N2467Tfs*26|1|0.51|ENSG00000107611|chr10:16913949-16913949|A/-|frameshift_variant;CUBN|p.R2817Mfs*39|1|0.03|ENSG00000107611|chr10:16899144-16899145|-/CATTCCCA|frameshift_variant	ENSG00000107611|ENST00000377833|CUBN	ENSG00000107611|ENST00000377833|CUBN	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.777587890625	2	500.8055	999.596446	1.5376	0.00077003	0.67137	0.00033623	2.2089	0.0011063	500.805701309764	98.172	0.46471	98.172	97.954	98.419	0					20	10	3	0	0	0	0.02658	1	10777	10777		64.207	2.0999	1	662300			61249	2605	50552	50597	67072	67072					0.09663200137129024
VLVRLHPTL	9	Unmodified	_VLVRLHPTL_					0	0	0			REV__ENST00000311413.4_1_11:119207130-119207223:+|nuORF	REV__ENST00000311413.4_1_11:119207130-119207223:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	524.3389892578125	2	524.337301	1046.66005	1.0578	0.00055463	-0.39222	-0.00020565	0.66555	0.00034897	524.3371760351496	79.279	1.6081	79.279	78.54	80.148	0					71	39	4	0	0	0	0.18193	1	8070	8070		79.451	7.5735	1	4532600	+		61250	24352	50553	50598	67073	67073					0.1385860536488508
VLVRLHTQSR	10	Unmodified	_VLVRLHTQSR_					0	0	0			REV__ENST00000344458.6_1_2:220414823-220415117:+|nuORF	REV__ENST00000344458.6_1_2:220414823-220415117:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	604.8631591796875	2	604.864746	1207.71494	1.4861	0.00089888	2.9891	0.001808	4.4752	0.0027069	604.8665892229517	146.4	0.64099	146.4	146.08	146.72	0					33	12	4	0	0	0	0.67729	1	17129	17129		35.152	13.192	1	66969	+		61251	24680	50554	50599	67074	67074					0.11938992165482887
VLVRNQLL	8	Unmodified	_VLVRNQLL_					0	0	0			REV__ENSG00000118491|ENST00000237275|ZC2HC1B	REV__ENSG00000118491|ENST00000237275|ZC2HC1B	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.7752990722656	2	477.808377	953.6022	0.31722	0.00015157	-0.51399	-0.00024559	-0.19677	-9.4019E-05	477.8079938321619	103.42	0.58905	103.42	103.14	103.73	0					23	13	2	0	0	0	0.028476	1	11600	11600		28.254	0	1	337030	+		61252	18399	50555	50600	67075	67075					0.12354343439471904
VLVSGILLL	9	Unmodified	_VLVSGILLL_					0	0	0		tr|A0A553SP33|A0A553SP33_NIACIFlagellarM-ringproteinOS=NialliacirculansOX=1397GN=fliFPE=3SV=1	tr|A0A553SP33|A0A553SP33_NIACIFlagellarM-ringproteinOS=NialliacirculansOX=1397GN=fliFPE=3SV=1	tr|A0A553SP33|A0A553SP33_NIACIFlagellarM-ringproteinOS=NialliacirculansOX=1397GN=fliFPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	463.8187561035156	2	463.817879	925.621205	1.1332	0.00052558	0.89992	0.0004174	2.0331	0.00094298	463.8181384508825	155.12	2.5278	155.12	154.47	157	0					119	49	3	0	0	0	0.25214	1	18225	18225		68.485	2.5872	1	188430			61253	33999	50556	50601	67076	67076					0.15541880010528075
VLVSQQNLLL	10	Unmodified	_VLVSQQNLLL_					0	0	0		nc|ENSG00000258628|A8MT19|RHPN2P1	nc|ENSG00000258628|A8MT19|RHPN2P1	nc|ENSG00000258628|A8MT19|RHPN2P1	MULTI-MSMS	OvCa9_classI_Rep3	3	563.8455200195312	2	563.845156	1125.67576	-0.9348	-0.00052708	0.78994	0.00044541	-0.14486	-8.1679E-05	563.8454049954004	116.57	0.84015	115.53	115.14	115.98	-1.0414					46	16	4	0	0	0	0.59317	1	8744	8744		42.864	0.46813	1	486550			61254	15361	50557	50602	67077	67077					0.11794847091277916
VLVSYKGE	8	Unmodified	_VLVSYKGE_					0	0	0		ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000204390|ENST00000375654|HSPA1L	ENSG00000204390|ENST00000375654|HSPA1L	MULTI-MSMS	OvCa99_classI_Rep5	1	447.75091552734375	2	447.750193	893.485833	2.3046	0.0010319	1.5782	0.00070664	3.8828	0.0017385	447.75067724240495	126.76	0.54251	126.76	126.42	126.96	0					18	11	2	0	0	0	0.62934	1	14660	14660		57.811	0	1	96531			61255	8979	50558	50603	67078	67078					0.03482980148908155
VLVTAPPMSPG	11	Unmodified	_VLVTAPPMSPG_					0	0	0		ENST00000512174.1_3_4:1006226-1006274:+|nuORF	ENST00000512174.1_3_4:1006226-1006274:+|nuORF	ENST00000512174.1_3_4:1006226-1006274:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	534.791748046875	2	534.791535	1067.56852	3.0352	0.0016232	-3.1332	-0.0016756	-0.09798	-5.2399E-05	534.7896759823677	56.343	2.6096	53.193	52.451	55.06	-3.1504					179	83	3	0	0	0	0.70865	1	1584	1584		26.693	0	1	87189			61256	12991	50559	50604	67079	67079					0.037435538853969774
VLVTLAGIIVY	11	Unmodified	_VLVTLAGIIVY_					0	0	0		nc|ENSG00000151651|P78325-2|ADAM8;ENSG00000151651|ENST00000445355|ADAM8	nc|ENSG00000151651|P78325-2|ADAM8	nc|ENSG00000151651|P78325-2|ADAM8	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.2613525390625	2	580.8681	1159.72165	1.4025	0.00081465	-3.9235	-0.0022791	-2.5211	-0.0014644	580.8659413090181	129.37	0.79222	129.37	128.98	129.77	0					27	16	2	0	0	0	0.025681	1	15040	15040		42.396	19.354	1	49575			61257	5573	50560	50605	67080	67080					0.14817492273527932
VLVVLDKP	8	Unmodified	_VLVVLDKP_					0	0	0			REV__ENSG00000172497|ENST00000307624|ACOT12	REV__ENSG00000172497|ENST00000307624|ACOT12	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.77276611328125	2	441.786579	881.558604	-0.62831	-0.00027758	1.1726	0.00051802	0.54425	0.00024044	441.7869306843168	106.06	0.90932	104.04	103.55	104.46	-2.0161					27	17	2	0	0	0	0.028476	1	9600	9600		18.324	0	1	21954	+		61258	21705	50561	50606	67081	67081					0.11308733942314575
VLVVPGGYL	9	Unmodified	_VLVVPGGYL_					0	0	0			REV__ENST00000565460.1_1_16:68289553-68293557:+|nuORF	REV__ENST00000565460.1_1_16:68289553-68293557:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.2373962402344	2	458.778754	915.542954	-0.15344	-7.0396E-05	-2.9633	-0.0013595	-3.1167	-0.0014299	458.77716442440925	41.061	0.53542	41.061	40.795	41.33	0					21	11	3	0	0	0	0.027462	1	2555	2555		39.021	11.139	1	102070	+		61259	17596	50562	50607	67082	67082					0.08180447425286275
VLVVRAKPRLI	11	Unmodified	_VLVVRAKPRLI_					0	0	0			REV__tr|A0A7D6ZH07|A0A7D6ZH07_9CLOT[FeFe]hydrogenaseH-clustermaturationGTPaseHydFOS=ClostridiumintestinaleOX=36845GN=hydFPE=4SV=1	REV__tr|A0A7D6ZH07|A0A7D6ZH07_9CLOT[FeFe]hydrogenaseH-clustermaturationGTPaseHydFOS=ClostridiumintestinaleOX=36845GN=hydFPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	632.4310913085938	2	632.434807	1262.85506	-5.7395	-0.0036299	-0.067111	-4.2443E-05	-5.8066	-0.0036723	632.4345273657251	163.44	1.2114	163.21	162.72	163.93	-0.22696					106	40	3	0	0	0	0.72567	2	16657	16619;16657		6.7355	0.42289	1	356230	+		61260	32014	50563	50608	67083;67084	67084					0.2341477616987504
VLVVRYFRKKR	11	Unmodified	_VLVVRYFRKKR_					0	0	0		tr|A0A553SLQ9|A0A553SLQ9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_21130PE=4SV=1	tr|A0A553SLQ9|A0A553SLQ9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_21130PE=4SV=1	tr|A0A553SLQ9|A0A553SLQ9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_21130PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	487.7850036621094	3	488.6489	1462.92487	-0.67664	-0.00033064	-4.2838	-0.0020933	-4.9605	-0.0024239	488.6465637159656	24.99	0.3036	24.99	24.738	25.042	0					8	5	2	0	0	0	0.026435	1	497	497		9.6461	1.2389	1	14099			61261	33753	50564	50609	67085	67085					0.21192654838455383
VLVVVFLP	8	Unmodified	_VLVVVFLP_					0	0	0		VAMP5|p.L89V|1|0.05|ENSG00000168899|chr2:85593071-85593071|C/G|missense_variant	VAMP5|p.L89V|1|0.05|ENSG00000168899|chr2:85593071-85593071|C/G|missense_variant	VAMP5|p.L89V|1|0.05|ENSG00000168899|chr2:85593071-85593071|C/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	443.7091064453125	2	443.29404	884.573526	-0.38802	-0.00017201	-3.6562	-0.0016208	-4.0442	-0.0017928	443.2922416803008	94.413	1.6182	92.517	91.744	93.362	-1.8956					67	31	3	0	0	0	0.028476	1	6006	6006		33.493	2.9893	1	79513			61262	36298	50565	50610	67086	67086					0.12662225810322525
VLVVVFLP	8	Unmodified	_VLVVVFLP_					0	0	0		VAMP5|p.L89V|1|0.05|ENSG00000168899|chr2:85593071-85593071|C/G|missense_variant	VAMP5|p.L89V|1|0.05|ENSG00000168899|chr2:85593071-85593071|C/G|missense_variant	VAMP5|p.L89V|1|0.05|ENSG00000168899|chr2:85593071-85593071|C/G|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	443.29404	884.573526	1.4602	0.0006473	-5.6528	-0.0025058	-4.1925	-0.0018585	443.291374221797	93.692	1.1855	92.592	92.225	93.411	-1.0995	0.056158	-0.0013849	NaN	33.493	52	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66833			61263	36298	50565	50610							0.12662225810322525
VLVVVFLP	8	Unmodified	_VLVVVFLP_					0	0	0		VAMP5|p.L89V|1|0.05|ENSG00000168899|chr2:85593071-85593071|C/G|missense_variant	VAMP5|p.L89V|1|0.05|ENSG00000168899|chr2:85593071-85593071|C/G|missense_variant	VAMP5|p.L89V|1|0.05|ENSG00000168899|chr2:85593071-85593071|C/G|missense_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	443.29404	884.573526	-0.88433	-0.00039202	-3.4333	-0.001522	-4.3176	-0.001914	443.292340567083	94.967	1.2536	92.499	92.11	93.363	-2.4685	-0.037177	0.00058288	NaN	33.493	61	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72212			61264	36298	50565	50610							0.12662225810322525
VLVWLALVGAL	11	Unmodified	_VLVWLALVGAL_					0	0	0			REV__ENSG00000211584|ENST00000442218|SLC48A1	REV__ENSG00000211584|ENST00000442218|SLC48A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.8275146484375	2	577.37081	1152.72707	-0.51753	-0.00029881	4.3489	0.0025109	3.8313	0.0022121	577.3732175615602	33.359	0.3471	33.359	33.186	33.533	0					13	6	3	0	0	0	0.025902	1	1526	1526		17.365	7.0997	1	84271	+		61265	23245	50566	50611	67087	67087					0.1568121585598874
VLVYSTCTI	9	Unmodified	_VLVYSTCTI_					0	0	0		ENSG00000241058|ENST00000377304|NSUN6	ENSG00000241058|ENST00000377304|NSUN6	ENSG00000241058|ENST00000377304|NSUN6	MULTI-MSMS	OvCa9_classI_Rep2	2	499.7652587890625	2	499.764986	997.515419	0.42626	0.00021303	-0.30435	-0.00015211	0.1219	6.0922E-05	499.76512722989173	126.31	4.05	126.07	125.5	129.55	-0.2359					192	81	3	0	0	0	0.38529	1	12370	12370		53.351	1.0523	1	11682000			61266	9348	50567	50612	67088	67088					0.016561761027446664
VLWDRTFSL	9	Unmodified	_VLWDRTFSL_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	OvCa99_classI_Rep5	1	568.8099975585938	2	568.808574	1135.60259	1.8124	0.0010309	-0.40744	-0.00023176	1.405	0.00079917	568.8083349173353	125.69	1.8805	125.69	125.39	127.27	0					152	41	6	0	0	0	0.013371	5	14521	14500;14521;14545;14570;14596		158.07	49.34	1	10570000			61267	3094	50568	50613	67089;67090;67091;67092;67093	67090					0.04021718368676375
VLWDRTFSLF	10	Unmodified	_VLWDRTFSLF_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	OvCa99_classI_Rep5	1	642.3441772460938	2	642.342781	1282.67101	1.7827	0.0011451	-0.025564	-1.6421E-05	1.7571	0.0011287	642.3426352620904	148.86	1.6215	148.86	148.47	150.1	0					88	32	5	0	0	0	0.35539	2	17418	17418;17448		74.165	4.587	1	1098700			61268	3094	50569	50614	67094;67095	67094					0.04097962948503664
VLWEIMQVD	9	Unmodified	_VLWEIMQVD_					0	0	0		nc|ENSG00000064419|Q9Y5L0-5|TNPO3;nc|ENSG00000064419|Q9Y5L0-3|TNPO3;ENSG00000064419|ENST00000265388|TNPO3;nc|ENSG00000064419|Q9Y5L0-1|TNPO3	nc|ENSG00000064419|Q9Y5L0-5|TNPO3	nc|ENSG00000064419|Q9Y5L0-5|TNPO3	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.8267822265625	2	566.788992	1131.56343	2.5859	0.0014657	1.8	0.0010202	4.3859	0.0024859	566.7899335767357	91.576	0.42082	91.576	91.332	91.753	0					23	9	3	0	0	0	0.027461	1	9880	9880		32.812	0	1	1631200			61269	1300	50570	50615	67096	67096					0.002912500227921555
VLWGRGPL	8	Unmodified	_VLWGRGPL_					0	0	0			REV__nc|ENSG00000113073|Q96Q91-4|SLC4A9	REV__nc|ENSG00000113073|Q96Q91-4|SLC4A9	MULTI-MSMS	OvCa9_classI_Rep2	2	449.26849365234375	2	449.268887	896.523222	3.2258	0.0014492	-3.3606	-0.0015098	-0.13485	-6.0583E-05	449.26732371902864	112.43	2.5171	112.3	111.93	114.45	-0.12174					121	50	4	0	0	0	0.72922	1	10704	10704		37.028	5.0736	1	1472600	+		61270	18134	50571	50616	67097	67097					0.07082116205185685
VLWIVDISF	9	Unmodified	_VLWIVDISF_					0	0	0		ENSG00000169605|ENST00000377938|GKN1	ENSG00000169605|ENST00000377938|GKN1	ENSG00000169605|ENST00000377938|GKN1	MULTI-SECPEP	OvCa9_classI_Rep2	2	546.3271484375	2	546.310418	1090.60628	-0.59467	-0.00032487	-0.25943	-0.00014173	-0.85409	-0.0004666	546.3096776880421	104.72	0.83965	104.15	103.82	104.66	-0.57639					26	16	2	0	0	0	0.027408	1	9702	9702		68.485	6.3773	1	27260			61271	7024	50572	50617	67098	67098					0.06460388142522788
VLWKGLQV	8	Unmodified	_VLWKGLQV_					0	0	0			REV__DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	REV__DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.80963134765625	2	471.792195	941.569838	0.6623	0.00031247	0.53114	0.00025059	1.1934	0.00056306	471.79289210742104	63.517	0.38811	63.517	63.219	63.607	0					12	9	2	0	0	0	0.028476	1	5692	5692		57.811	20.783	1	317160	+		61272	16340	50573	50618	67099	67099					0.0967155603646006
VLWLGNIKI	9	Unmodified	_VLWLGNIKI_					0	0	0		tr|A0A7D6VU81|A0A7D6VU81_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00965PE=4SV=1	tr|A0A7D6VU81|A0A7D6VU81_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00965PE=4SV=1	tr|A0A7D6VU81|A0A7D6VU81_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00965PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	528.3336181640625	2	528.334227	1054.6539	2.2917	0.0012108	-3.4105	-0.0018019	-1.1188	-0.00059112	528.3322125594776	97.99	0.59361	97.99	97.738	98.332	0					18	13	2	0	0	0	0.34496	1	10769	10769		57.811	1.0902	1	1585300			61273	35172	50574	50619	67100	67100					0.12876087133349756
VLWLIFLL	8	Unmodified	_VLWLIFLL_					0	0	0		ENST00000480308.5_1_1:161647083-161647340:+|nuORF	ENST00000480308.5_1_1:161647083-161647340:+|nuORF	ENST00000480308.5_1_1:161647083-161647340:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.2913818359375	2	508.830789	1015.64703	-0.87328	-0.00044435	-3.3225	-0.0016906	-4.1957	-0.0021349	508.8288995697004	116.26	0.83987	115.21	114.95	115.79	-1.0414					37	16	3	0	0	0	0.028476	1	8700	8700		43.626	20.584	1	59669			61274	12521	50575	50620	67101	67101					0.1398277425279275
VLWLIFLL	8	Unmodified	_VLWLIFLL_					0	0	0		ENST00000480308.5_1_1:161647083-161647340:+|nuORF	ENST00000480308.5_1_1:161647083-161647340:+|nuORF	ENST00000480308.5_1_1:161647083-161647340:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.2906188964844	2	508.830789	1015.64703	-0.31876	-0.0001622	-4.4461	-0.0022623	-4.7648	-0.0024245	508.8283696000107	116.59	1.0343	115.23	114.89	115.93	-1.3645					39	19	3	0	0	0	0.028476	1	10899	10899		54.895	0	1	68283			61275	12521	50575	50620	67102	67102					0.1398277425279275
VLWLLLTP	8	Unmodified	_VLWLLLTP_					0	0	0			REV__ENSG00000198911|ENST00000361204|SREBF2	REV__ENSG00000198911|ENST00000361204|SREBF2	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.30126953125	2	477.804771	953.59499	-0.96891	-0.00046295	-3.9042	-0.0018654	-4.8731	-0.0023284	477.8027426497499	85.865	1.7259	84.375	83.653	85.379	-1.4907					77	33	4	0	0	0	0.028476	1	7547	7547		49.211	20.061	1	346340	+		61276	23092	50576	50621	67103	67103					0.11633610839021458
VLWLYELN	8	Unmodified	_VLWLYELN_					0	0	0		nc|ENSG00000183307|Q9BXQ6-2|TMEM121B;ENSG00000183307|ENST00000331437|TMEM121B	nc|ENSG00000183307|Q9BXQ6-2|TMEM121B	nc|ENSG00000183307|Q9BXQ6-2|TMEM121B	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.31494140625	2	525.286943	1048.55933	1.0881	0.00057157	-3.4253	-0.0017993	-2.3372	-0.0012277	525.2851226284461	123.18	0.56221	123.18	122.95	123.51	0					20	11	2	0	0	0	0.028476	1	14193	14193		4.3163	0	1	273160			61277	8063	50577	50622	67104	67104					0.03699528591369017
VLWTMVIHI	9	Unmodified	_VLWTMVIHI_					0	0	0		ENST00000588806.1_1_17:40665776-40673135:+|nuORF;nc|ENSG00000033627|Q93050-1|ATP6V0A1;ENSG00000033627|ENST00000343619|ATP6V0A1;nc|ENSG00000033627|Q93050-3|ATP6V0A1	ENST00000588806.1_1_17:40665776-40673135:+|nuORF	ENST00000588806.1_1_17:40665776-40673135:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	556.3212890625	2	556.320263	1110.62597	1.4499	0.00080662	0.020345	1.1318E-05	1.4703	0.00081793	556.3200769161305	144.98	1.7785	144.98	144.6	146.38	0					72	36	3	0	0	0	0.027215	2	16958	16936;16958		138.48	56.175	1	461560			61278	1076	50578	50623	67105;67106	67106					0.0750844088163376
VLWVTGCPPL	10	Unmodified	_VLWVTGCPPL_					0	0	0		ENST00000355832.9_2_10:50740763-50741003:-|nuORF	ENST00000355832.9_2_10:50740763-50741003:-|nuORF	ENST00000355832.9_2_10:50740763-50741003:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	542.7997436523438	2	542.79662	1083.57869	0.8602	0.00046691	2.6002	0.0014114	3.4604	0.0018783	542.7978567793076	153.16	2.0687	153.16	152.45	154.52	0					102	45	3	0	0	0	0.62668	1	17894	17894		38.806	2.3594	1	105310			61279	10686	50579	50624	67107	67107					0.040241616106186484
VLWVVKTK	8	Unmodified	_VLWVVKTK_					0	0	0			REV__PI4K2B|p.R271Gfs*23|1|0.21|ENSG00000038210|chr4:25259089-25259089|T/-|frameshift_variant	REV__PI4K2B|p.R271Gfs*23|1|0.21|ENSG00000038210|chr4:25259089-25259089|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	486.8127746582031	2	486.81567	971.616788	-0.51721	-0.00025178	-3.8731	-0.0018855	-4.3903	-0.0021373	486.8136606093423	57.145	2.3904	54.353	53.634	56.024	-2.792					128	47	4	0	0	0	0.66704	1	4092	4092		50.025	5.0023	1	495540	+		61280	16615	50580	50625	67108	67108					0.12984415587595777
VLYALSSFD	9	Unmodified	_VLYALSSFD_					0	0	0		nc|ENSG00000253159|O60330-2|PCDHGA12;ENSG00000253159|ENST00000252085|PCDHGA12	nc|ENSG00000253159|O60330-2|PCDHGA12	nc|ENSG00000253159|O60330-2|PCDHGA12	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7628479003906	2	507.760758	1013.50696	0.48572	0.00024663	3.4576	0.0017556	3.9433	0.0020022	507.76242082287587	126.44	3.901	126.2	123.43	127.33	-0.2359					157	78	4	0	0	0	0.25214	1	12311	12311		68.485	10.673	1	953460			61281	9425	50581	50626	67109	67109					0.0007494545776580708
VLYALSSFD	9	Unmodified	_VLYALSSFD_					0	0	0		nc|ENSG00000253159|O60330-2|PCDHGA12;ENSG00000253159|ENST00000252085|PCDHGA12	nc|ENSG00000253159|O60330-2|PCDHGA12	nc|ENSG00000253159|O60330-2|PCDHGA12	MULTI-MSMS	OvCa9_classI_Rep3	3	507.7624816894531	2	507.760758	1013.50696	0.78302	0.00039759	3.1816	0.0016155	3.9646	0.0020131	507.76227016858786	127.25	3.6353	126.18	123.46	127.1	-1.0715					121	69	3	0	0	0	0.27546	1	9972	9972		65.803	7.0212	1	658450			61282	9425	50581	50626	67110	67110					0.0007494545776580708
VLYAPWLL	8	Unmodified	_VLYAPWLL_					0	0	0		ENSG00000167700|ENST00000301327|MFSD3;MFSD3|p.L154Tfs*64|1|0.17|ENSG00000167700|chr8:144509789-144509823|CGCGCTGCTGGCGCTGCTGCCCACCTTCTCGTGGC/-|frameshift_variant;ENST00000528047.5_1_8:145734716-145735997:+|nuORF	ENSG00000167700|ENST00000301327|MFSD3	ENSG00000167700|ENST00000301327|MFSD3	MULTI-MSMS	OvCa9_classI_Rep3	3	487.79144287109375	2	487.789121	973.56369	-5.9707	-0.0029125	3.886	0.0018956	-2.0847	-0.0010169	487.7934424937764	154.43	1.6772	153.42	152.92	154.6	-1.0076					47	37	2	0	0	0	0.75058	1	13255	13255		16.705	0.23182	1	40258			61283	6834	50582	50627	67111	67111					0.0758503780494948
VLYDRVLKY	9	Unmodified	_VLYDRVLKY_					0	0	0		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;nc|ENSG00000167881|Q9UHB9-3|SRP68;ENST00000586859.1_1_17:74039843-74041464:-|nuORF	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	MULTI-MSMS	OvCa9_classI_Rep2	2	584.8385620117188	2	584.839874	1167.66519	-1.2273	-0.00071778	-0.46906	-0.00027432	-1.6964	-0.0009921	584.8402683844083	84.171	1.0739	82.624	82.326	83.4	-1.5462					88	20	5	0	0	0	0.018335	6	7231	7231;7234;7240;7247;7253;7259		148.99	74.732	1	1579000			61284	6846	50583	50628	67112;67113;67114;67115;67116;67117	67112					0.08806864436837714
VLYDRVLKY	9	Unmodified	_VLYDRVLKY_					0	0	0		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;nc|ENSG00000167881|Q9UHB9-3|SRP68;ENST00000586859.1_1_17:74039843-74041464:-|nuORF	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	MULTI-MSMS	OvCa9_classI_Rep3	3	584.8405151367188	2	584.839874	1167.66519	-2.4172	-0.0014137	0.97248	0.00056874	-1.4447	-0.00084492	584.8409888116595	85.165	1.0873	82.945	82.598	83.686	-2.2204					76	21	5	0	0	0	0.021573	7	4991	4981;4985;4991;4997;5004;5011;5018		145.16	67.838	1	2182000			61285	6846	50583	50628	67118;67119;67120;67121;67122;67123;67124	67120					0.08806864436837714
VLYDRVLKY	9	Unmodified	_VLYDRVLKY_					0	0	0		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;nc|ENSG00000167881|Q9UHB9-3|SRP68;ENST00000586859.1_1_17:74039843-74041464:-|nuORF	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.842529296875	2	584.839874	1167.66519	0.73681	0.00043091	1.3932	0.00081478	2.13	0.0012457	584.840409146558	85.448	1.2326	82.802	82.411	83.643	-2.6463					43	24	3	0	0	0	0.043101	6	7201	7168;7179;7189;7201;7213;7227		124.08	57.651	1	842350			61286	6846	50583	50628	67125;67126;67127;67128;67129;67130	67128					0.08806864436837714
VLYDRVLKY	9	Unmodified	_VLYDRVLKY_					0	0	0		nc|ENSG00000167881|Q9UHB9-4|SRP68;nc|ENSG00000167881|Q9UHB9-2|SRP68;ENSG00000167881|ENST00000307877|SRP68;nc|ENSG00000167881|Q9UHB9-3|SRP68;ENST00000586859.1_1_17:74039843-74041464:-|nuORF	nc|ENSG00000167881|Q9UHB9-4|SRP68	nc|ENSG00000167881|Q9UHB9-4|SRP68	MULTI-MATCH	OvCa99_classI_Rep5	1		2	584.839874	1167.66519	2.0478	0.0011976	-3.382	-0.0019779	-1.3342	-0.0007803	584.8377075333494	82.689	0.46906	82.689	82.437	82.906	0	-0.076324	-0.0039185	NaN	148.99	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208510			61287	6846	50583	50628							0.08806864436837714
VLYDYGGPF	9	Unmodified	_VLYDYGGPF_					0	0	0			REV__ENST00000490939.1_1_6:25087010-25108891:-|nuORF	REV__ENST00000490939.1_1_6:25087010-25108891:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	516.27880859375	2	515.74765	1029.48075	-0.19711	-0.00010166	2.9671	0.0015303	2.77	0.0014286	515.7490900947854	67.186	0.7923	64.525	64.149	64.941	-2.661					26	15	2	0	0	0	0.027441	1	5285	5285		52.299	0	1	28336	+		61288	26665	50584	50629	67131	67131					-0.03281323713713391
VLYGKRPLSTL	11	Unmodified	_VLYGKRPLSTL_					0	0	0			REV__tr|A0A7D7A0S2|A0A7D7A0S2_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11200PE=4SV=1	REV__tr|A0A7D7A0S2|A0A7D7A0S2_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11200PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	416.24493408203125	3	416.255446	1245.74451	1.1159	0.00046449	3.1838	0.0013253	4.2997	0.0017898	416.2556682831167	72.431	0.43465	72.431	72.249	72.684	0					17	10	2	0	0	0	0.02523	1	7049	7049		44.639	8.1115	1	149560	+		61289	32455	50585	50630	67132	67132					0.13146511390982596
VLYGVHVLVM	10	Unmodified	_VLYGVHVLVM_					0	0	0			REV__ENSG00000141622|ENST00000269439|RNF165	REV__ENSG00000141622|ENST00000269439|RNF165	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.8248901367188	2	565.325545	1128.63654	2.365	0.001337	-0.023815	-1.3463E-05	2.3412	0.0013235	565.3254633468138	110.38	1.1562	110.38	110.13	111.29	0					49	25	3	0	0	0	0.026672	1	12515	12515		35.201	3.2459	1	1739600	+		61290	19752	50586	50631	67133	67133					0.0773642353606192
VLYLFLKKSW	10	Unmodified	_VLYLFLKKSW_					0	0	0		tr|A0A7D6ZZW5|A0A7D6ZZW5_9CLOTTraB/GumNfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07785PE=4SV=1	tr|A0A7D6ZZW5|A0A7D6ZZW5_9CLOTTraB/GumNfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07785PE=4SV=1	tr|A0A7D6ZZW5|A0A7D6ZZW5_9CLOTTraB/GumNfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07785PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	433.9100646972656	3	432.92867	1295.76418	1.8159	0.00078615	0.33375	0.00014449	2.1496	0.00093064	432.9286513479234	64.169	0.45724	61.175	61.038	61.496	-2.9933					13	8	2	0	0	0	0.02739	1	2498	2498		17.468	5.8321	1	19839			61291	35976	50587	50632	67134	67134					0.12812887401742046
VLYLFLKKSW	10	Unmodified	_VLYLFLKKSW_					0	0	0		tr|A0A7D6ZZW5|A0A7D6ZZW5_9CLOTTraB/GumNfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07785PE=4SV=1	tr|A0A7D6ZZW5|A0A7D6ZZW5_9CLOTTraB/GumNfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07785PE=4SV=1	tr|A0A7D6ZZW5|A0A7D6ZZW5_9CLOTTraB/GumNfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07785PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	432.92867	1295.76418	-0.9511	-0.00041176	-4.0528	-0.0017546	-5.0039	-0.0021664	432.92677350518784	63.769	1.9349	61.025	60.586	62.521	-2.7444	-0.075303	-0.0012833	NaN	12.207	90	36	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	165890			61292	35976	50587	50632							0.12812887401742046
VLYLIFAIR	9	Unmodified	_VLYLIFAIR_					0	0	0			REV__nc|ENSG00000087263|Q8N543-2|OGFOD1	REV__nc|ENSG00000087263|Q8N543-2|OGFOD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.8104248046875	2	554.349877	1106.6852	1.8476	0.0010242	2.5711	0.0014253	4.4187	0.0024495	554.3520082872903	92.54	0.41947	92.54	92.343	92.762	0					14	9	3	0	0	0	0.027462	1	9989	9989		25.45	7.1258	1	395100	+		61293	17161	50588	50633	67135	67135					0.13612660167450485
VLYMDLIL	8	Oxidation (M)	_VLYM(Oxidation (M))DLIL_		VLYM(1)DLIL		VLYM(75)DLIL	0	0	1		ENST00000302640.12_1_3:4888999-4889098:+|nuORF	ENST00000302640.12_1_3:4888999-4889098:+|nuORF	ENST00000302640.12_1_3:4888999-4889098:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.28167724609375	2	498.277729	994.540905	3.4549	0.0017215	4.1533	0.0020695	7.6081	0.003791	498.27969539761534	133.03	1.2718	131.52	131.13	132.4	-1.5114					73	25	4	0	0	0	0.52992	1	12816	12816		74.517	6.0319	1	540930			61294	10205	50589	50634	67136	67136		293			0.04341650625190141
VLYQLAHTL	9	Unmodified	_VLYQLAHTL_					0	0	0		nc|ENSG00000124440|Q9Y2N7-4|HIF3A;ENST00000475432.6_1_19:46800333-46815736:+|nuORF;ENST00000528563.5_1_19:46807167-46825077:+|nuORF;nc|ENSG00000124440|Q9Y2N7-3|HIF3A;ENST00000244302.8_1_19:46800333-46834596:+|nuORF;nc|ENSG00000124440|Q9Y2N7-2|HIF3A;ENSG00000124440|ENST00000377670|HIF3A	nc|ENSG00000124440|Q9Y2N7-4|HIF3A	nc|ENSG00000124440|Q9Y2N7-4|HIF3A	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.2728881835938	2	529.305667	1056.59678	1.9623	0.0010386	-2.2814	-0.0012075	-0.31911	-0.00016891	529.8070468961654	110.84	0.44202	110.84	110.58	111.02	0					13	9	2	0	0	0	0.027462	1	12598	12598		45.952	13.997	1	131900			61295	3651	50590	50635	67137	67137					0.0707461985698501
VLYTIIVPF	9	Unmodified	_VLYTIIVPF_					0	0	0		ENSG00000186440|ENST00000641540|OR6P1	ENSG00000186440|ENST00000641540|OR6P1	ENSG00000186440|ENST00000641540|OR6P1	MULTI-MSMS	OvCa99_classI_Rep5	1	533.3244018554688	2	532.823161	1063.63177	-0.20162	-0.00010743	-3.9213	-0.0020894	-4.123	-0.0021968	532.8197061797522	41.008	0.70888	41.008	40.711	41.42	0					39	15	3	0	0	0	0.50066	1	2542	2542		42.474	1.6963	1	746700			61296	8335	50591	50636	67138	67138					0.10249862664932152
VLYVGSKTK	9	Unmodified	_VLYVGSKTK_					0	0	0		nc|ENSG00000145335|P37840-2|SNCA;ENSG00000145335|ENST00000394991|SNCA	nc|ENSG00000145335|P37840-2|SNCA	nc|ENSG00000145335|P37840-2|SNCA	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.8009948730469	2	497.800217	993.585882	-1.2392	-0.00061686	0.89312	0.0004446	-0.34604	-0.00017226	497.8004818565883	44.22	1.0683	41.212	41.038	42.106	-3.0074					42	20	3	0	0	0	0.18887	1	2182	2182		78.264	11.835	1	387740			61297	5216	50592	50637	67139	67139					0.08883217482718919
VLYVGSKTK	9	Unmodified	_VLYVGSKTK_					0	0	0		nc|ENSG00000145335|P37840-2|SNCA;ENSG00000145335|ENST00000394991|SNCA	nc|ENSG00000145335|P37840-2|SNCA	nc|ENSG00000145335|P37840-2|SNCA	MULTI-MATCH	OvCa9_classI_Rep2	2		2	497.800217	993.585882	0.2721	0.00013545	-0.68744	-0.00034221	-0.41534	-0.00020676	497.79967977251624	43.988	0.74766	41.278	41.054	41.802	-2.7097	0.032861	-0.0010135	NaN	78.264	35	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	78261			61298	5216	50592	50637							0.08883217482718919
VLYYLLPF	8	Unmodified	_VLYYLLPF_					0	0	0		ENST00000473770.5_1_22:32017296-32019834:-|nuORF;nc|ENSG00000241878|Q9UG56-2|PISD	ENST00000473770.5_1_22:32017296-32019834:-|nuORF	ENST00000473770.5_1_22:32017296-32019834:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.317626953125	2	514.296779	1026.57901	-1.0786	-0.0005547	-4.4903	-0.0023094	-5.5689	-0.0028641	514.7981523915956	55.53	0.15016	52.235	52.16	52.311	-3.2944					4	2	2	0	0	0	0.028476	1	3503	3503		10.185	0	1	17334			61299	12421	50593	50638	67140	67140					0.06677904602133822
VMADAFFVM	9	Unmodified	_VMADAFFVM_					0	0	0			REV__DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant	REV__DNAH5|p.Q3841Afs*11|1|0.21|ENSG00000039139|chr5:13735855-13735867|GAAGCGAAGTCTG/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.8103637695312	2	515.740457	1029.46636	0.10022	5.1687E-05	3.6347	0.0018745	3.7349	0.0019262	516.2434303274907	115.46	0.29699	114.06	113.92	114.22	-1.3977					9	5	2	0	0	0	0.027462	1	10737	10737		21.702	3.3779	1	7382.5	+		61300	16314	50594	50639	67141	67141					-0.047194354578778075
VMALIPGSPG	10	Oxidation (M)	_VM(Oxidation (M))ALIPGSPG_		VM(1)ALIPGSPG		VM(63)ALIPGSPG	0	0	1			REV__nc|ENSG00000186470|P78410-2|BTN3A2	REV__nc|ENSG00000186470|P78410-2|BTN3A2	MULTI-MSMS	OvCa99_classI_Rep5	1	479.2604675292969	2	479.257328	956.500103	0.13163	6.3084E-05	3.6522	0.0017503	3.7838	0.0018134	479.2589537931221	52.544	0.69543	52.544	52.304	52.999	0					41	15	4	0	0	0	0.43592	1	4146	4146		63.306	6.5852	1	4831200	+		61301	22588	50595	50640	67142	67142		519			0.02011309305555642
VMANPENGL	9	Unmodified	_VMANPENGL_					0	0	0			REV__tr|A0A7D6ZVT4|A0A7D6ZVT4_9CLOTYncEfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14940PE=4SV=1	REV__tr|A0A7D6ZVT4|A0A7D6ZVT4_9CLOTYncEfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14940PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.75396728515625	2	472.728935	943.443317	1.0708	0.00050619	-0.35063	-0.00016575	0.72015	0.00034044	472.72779733678453	64.652	0.72966	61.167	60.822	61.552	-3.4854					20	14	2	0	0	0	0.027343	1	4598	4598		58.782	0	1	19068	+		61302	32261	50596	50641	67143	67143					-0.03066738250970502
VMAPRTLLL	9	Unmodified	_VMAPRTLLL_					0	0	0		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-MSMS	OvCa99_classI_Rep5	1	507.30780029296875	2	507.312438	1012.61032	3.1408	0.0015934	-1.5359	-0.00077918	1.6049	0.0008142	507.31151232014093	102.52	0.63931	102.52	102.12	102.76	0					46	14	4	0	0	0	0.10502	2	11453	11428;11453		95.815	0	1	18289000			61303	9098	50597	50642	67144;67145	67145					0.10452154364600119
VMAPRTLLL	9	Unmodified	_VMAPRTLLL_					0	0	0		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-MSMS	OvCa9_classI_Rep2	2	507.31353759765625	2	507.312438	1012.61032	-0.61988	-0.00031447	-1.0348	-0.00052494	-1.6546	-0.00083941	507.31232500900717	105.41	1.7939	104.98	104.65	106.44	-0.43642					95	35	6	0	0	0	0.21231	4	9791	9791;9798;9804;9810		74.255	0	1	595350			61304	9098	50597	50642	67146;67147;67148;67149	67146					0.10452154364600119
VMAPRTLLL	9	Unmodified	_VMAPRTLLL_					0	0	0		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-MSMS	OvCa9_classI_Rep3	3	507.31304931640625	2	507.312438	1012.61032	0.0033396	1.6942E-06	-0.43759	-0.000222	-0.43425	-0.0002203	507.3121655394283	106.38	2.033	105.11	104.59	106.62	-1.267					100	39	5	0	0	0	0.12515	3	7505	7501;7505;7512		90.37	0	1	543500			61305	9098	50597	50642	67150;67151;67152	67151					0.10452154364600119
VMAPRTLLL	9	Unmodified	_VMAPRTLLL_					0	0	0		ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000496081.5_1_6:29910330-29912419:+|nuORF;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;ENST00000463348.5_1_6:30227401-30227711:+|nuORF	ENSG00000206503|ENST00000376809|HLA-A	ENSG00000206503|ENST00000376809|HLA-A	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.3126525878906	2	507.312438	1012.61032	-1.7035	-0.00086421	0.33404	0.00016946	-1.3695	-0.00069475	507.3130114268932	107.02	1.6679	105.14	104.7	106.36	-1.8785					81	32	5	0	0	0	0.37135	2	9764	9752;9764		54.776	0	1	675170			61306	9098	50597	50642	67153;67154	67154					0.10452154364600119
VMAPRTVLL	9	Unmodified	_VMAPRTVLL_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa99_classI_Rep5	1	500.305908203125	2	500.304613	998.594672	2.5395	0.0012705	-0.70964	-0.00035503	1.8298	0.00091546	500.3042015104892	96.421	1.6994	96.421	96.168	97.867	0					108	39	4	0	0	0	0.083631	2	10570	10540;10570		101.6	24.827	1	25942000			61307	9301	50598	50643	67155;67156	67156					0.09531867847545072
VMAPRTVLL	9	Unmodified	_VMAPRTVLL_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep2	2	500.30462646484375	2	500.304613	998.594672	-0.5363	-0.00026831	0.028076	1.4047E-05	-0.50822	-0.00025427	500.3045159624648	95.321	1.6372	94.293	93.873	95.51	-1.0281					71	32	3	0	0	0	0.035142	4	8561	8561;8567;8574;8580		131.03	34.991	1	718460			61308	9301	50598	50643	67157;67158;67159;67160	67157					0.09531867847545072
VMAPRTVLL	9	Unmodified	_VMAPRTVLL_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep3	3	500.3047180175781	2	500.304613	998.594672	-1.1361	-0.00056838	0.9054	0.00045298	-0.23067	-0.00011541	500.30496031507863	96.178	1.7229	94.349	93.93	95.652	-1.8286					74	33	3	0	0	0	0.049969	4	6319	6307;6313;6319;6325		118.74	37.746	1	762400			61309	9301	50598	50643	67161;67162;67163;67164	67163					0.09531867847545072
VMAPRTVLL	9	Unmodified	_VMAPRTVLL_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.3054504394531	2	500.304613	998.594672	0.68695	0.00034369	-0.83476	-0.00041763	-0.1478	-7.3947E-05	500.3040616545028	96.797	1.7137	94.371	93.964	95.678	-2.4256					76	33	4	0	0	0	0.094616	3	8571	8571;8583;8596		98.629	21.855	1	779060			61310	9301	50598	50643	67165;67166;67167	67165					0.09531867847545072
VMAPRTVLL	9	Unmodified	_VMAPRTVLL_					0	0	0		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.3054504394531	2	500.304613	998.594672	-0.54138	-0.00027086	-0.20359	-0.00010186	-0.74497	-0.00037271	500.30443519252344	98.755	1.9878	96.399	95.698	97.686	-2.3557					81	38	4	0	0	0	0.21231	1	8802	8802		74.255	17.534	1	402920			61311	9301	50598	50643	67168	67168					0.09531867847545072
VMAPRTVLL	9	Oxidation (M)	_VM(Oxidation (M))APRTVLL_		VM(1)APRTVLL		VM(85)APRTVLL	0	0	1		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep2	2	508.30078125	2	508.30207	1014.58959	1.47	0.00074719	-2.3223	-0.0011804	-0.85233	-0.00043324	508.3008087559392	88.242	3.2882	86.874	85.079	88.367	-1.3676					151	65	4	0	0	0	0.14855	4	7720	7709;7715;7720;7726		85.161	20.267	1	1204300			61312	9301	50598	50644	67169;67170;67171;67172	67171		278			0.08287563984924873
VMAPRTVLL	9	Oxidation (M)	_VM(Oxidation (M))APRTVLL_		VM(1)APRTVLL		VM(85)APRTVLL	0	0	1		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep3	3	508.30242919921875	2	508.30207	1014.58959	-0.75191	-0.0003822	0.070559	3.5865E-05	-0.68135	-0.00034633	508.3020452283535	89.004	2.3018	86.873	86.112	88.414	-2.1309					130	45	4	0	0	0	0.14855	2	5425	5425;5430		85.161	7.8432	1	1985700			61313	9301	50598	50644	67173;67174	67173		278			0.08287563984924873
VMAPRTVLL	9	Oxidation (M)	_VM(Oxidation (M))APRTVLL_		VM(1)APRTVLL		VM(85)APRTVLL	0	0	1		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep3	3	508.302734375	2	508.30207	1014.58959	-1.2021	-0.00061101	0.25996	0.00013214	-0.9421	-0.00047887	508.30219341276	91.129	3.5554	89.105	88.52	92.076	-2.0241					114	71	2	0	0	0	0.14855	1	5677	5677		85.161	16.374	1	1119200			61314	9301	50598	50644	67175	67175		278			0.08287563984924873
VMAPRTVLL	9	Oxidation (M)	_VM(Oxidation (M))APRTVLL_		VM(1)APRTVLL		VM(96)APRTVLL	0	0	1		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.30328369140625	2	508.30207	1014.58959	-0.06012	-3.0559E-05	-0.75584	-0.00038419	-0.81596	-0.00041475	508.30166355972597	89.428	2.3042	86.841	86.1	88.404	-2.5874					123	45	4	0	0	0	0.10502	1	7669	7669		95.815	21.56	1	1748000			61315	9301	50598	50644	67176	67176		278			0.08287563984924873
VMAPRTVLL	9	Oxidation (M)	_VM(Oxidation (M))APRTVLL_		VM(1)APRTVLL		VM(55)APRTVLL	0	0	1		ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;ENST00000434333.1_1_6:31324722-31324935:-|nuORF	ENSG00000234745|ENST00000412585|HLA-B	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.3028259277344	2	508.30207	1014.58959	-0.76495	-0.00038883	0.055771	2.8348E-05	-0.70918	-0.00036048	508.30206090776204	91.63	3.1704	89.087	88.142	91.312	-2.5425					143	63	4	0	0	0	0.37135	1	7915	7915		54.776	6.8607	1	903450			61316	9301	50598	50644	67177	67177		278			0.08287563984924873
VMARAITIL	9	Unmodified	_VMARAITIL_					0	0	0			REV__tr|A0A553SUJ8|A0A553SUJ8_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_00400PE=4SV=1	REV__tr|A0A553SUJ8|A0A553SUJ8_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_00400PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.2918395996094	2	494.304613	986.594672	-1.6677	-0.00082436	-2.2553	-0.0011148	-3.9231	-0.0019392	494.3032858818985	107.55	0.64375	105.67	105.33	105.97	-1.8785					14	12	2	0	0	0	0.027462	1	9826	9826		45.952	10.334	1	31230	+		61317	31088	50599	50645	67178	67178					0.10083867847538386
VMARAITIL	9	Unmodified	_VMARAITIL_					0	0	0			REV__tr|A0A553SUJ8|A0A553SUJ8_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_00400PE=4SV=1	REV__tr|A0A553SUJ8|A0A553SUJ8_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_00400PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	494.304613	986.594672	0.16728	8.2686E-05	-5.2066	-0.0025737	-5.0394	-0.002491	494.3018138426313	106.14	0.74818	105.71	105.45	106.2	-0.43642	0.019861	-0.00053407	NaN	45.952	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19092	+		61318	31088	50599	50645							0.10083867847538386
VMDEISGGHVS	11	Oxidation (M)	_VM(Oxidation (M))DEISGGHVS_		VM(1)DEISGGHVS		VM(55)DEISGGHVS	0	0	1			REV__IFI44L|p.R376Dfs*3|1|0.04|ENSG00000137959|chr1:78641098-78641098|A/-|frameshift_variant;REV__ENST00000486882.5_1_1:79093429-79094083:+|nuORF	REV__IFI44L|p.R376Dfs*3|1|0.04|ENSG00000137959|chr1:78641098-78641098|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	573.7590942382812	2	573.75842	1145.50229	1.9902	0.0011419	-1.9259	-0.001105	0.064271	3.6876E-05	573.7570938549945	82.756	0.89775	82.756	82.522	83.419	0					46	20	4	0	0	0	0.48738	1	8606	8606		54.776	6.8607	1	3604000	+		61319	19495;26592	50600	50646	67179	67179		447			-0.06464306747307091
VMDKTRALI	9	Unmodified	_VMDKTRALI_					0	0	0		nc|ENSG00000137752|P29466-2|CASP1;ENSG00000137752|ENST00000533400|CASP1;ENST00000527065.1_1_11:104915107-104915377:-|nuORF;ENSG00000204397|ENST00000673097|CARD16;ENST00000526511.5_1_11:104901858-104905840:-|nuORF;nc|ENSG00000204397|Q5EG05|CARD16	nc|ENSG00000137752|P29466-2|CASP1	nc|ENSG00000137752|P29466-2|CASP1	MULTI-MSMS	OvCa99_classI_Rep5	1	523.8052368164062	2	523.804977	1045.5954	-1.0316	-0.00054036	0.53574	0.00028062	-0.49588	-0.00025974	523.8051135968562	61.536	0.49397	61.536	61.332	61.826	0					29	11	3	0	0	0	0.1149	2	5426	5426;5432		93.143	24.356	1	1434800			61320	4611	50601	50647	67180;67181	67180					0.07442662496578123
VMDSKIVQV	9	Unmodified	_VMDSKIVQV_					0	0	0		ENSG00000114030|ENST00000344337|KPNA1;KPNA6|p.E517Dfs*11|1|0.17|ENSG00000025800|chr1:32170833-32170834|AA/-|frameshift_variant;ENSG00000025800|ENST00000373625|KPNA6;KHDRBS1-KPNA6|1|fusion;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000114030|ENST00000344337|KPNA1	MULTI-MSMS	OvCa99_classI_Rep5	1	509.78521728515625	2	509.78371	1017.55287	2.0771	0.0010589	0.20961	0.00010686	2.2867	0.0011657	509.78375383283856	78.191	1.1945	78.191	77.884	79.079	0					84	28	5	0	0	0	0.017173	2	7930	7901;7930		150.36	57.166	1	14877000			61321	3008;8657	50602	50648	67182;67183	67183					0.044792673683673456
VMDSKIVQV	9	Unmodified	_VMDSKIVQV_					0	0	0		ENSG00000114030|ENST00000344337|KPNA1;KPNA6|p.E517Dfs*11|1|0.17|ENSG00000025800|chr1:32170833-32170834|AA/-|frameshift_variant;ENSG00000025800|ENST00000373625|KPNA6;KHDRBS1-KPNA6|1|fusion;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000114030|ENST00000344337|KPNA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.7867431640625	2	509.78371	1017.55287	-0.96025	-0.00048952	0.52042	0.0002653	-0.43983	-0.00022422	509.7840471117987	80.739	1.4192	78.029	77.566	78.985	-2.7106					73	28	3	0	0	0	0.066102	3	6608	6597;6608;6621		109.48	19.012	1	1000800			61322	3008;8657	50602	50648	67184;67185;67186	67185					0.044792673683673456
VMDSKIVQV	9	Unmodified	_VMDSKIVQV_					0	0	0		ENSG00000114030|ENST00000344337|KPNA1;KPNA6|p.E517Dfs*11|1|0.17|ENSG00000025800|chr1:32170833-32170834|AA/-|frameshift_variant;ENSG00000025800|ENST00000373625|KPNA6;KHDRBS1-KPNA6|1|fusion;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000114030|ENST00000344337|KPNA1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	509.78371	1017.55287	0.1891	9.6401E-05	-0.48271	-0.00024608	-0.29361	-0.00014968	509.7835364272773	80.04	1.5583	78.345	77.61	79.168	-1.6951	0.22063	-0.00061522	NaN	150.36	55	30	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	341270			61323	3008;8657	50602	50648							0.044792673683673456
VMDSKIVQV	9	Unmodified	_VMDSKIVQV_					0	0	0		ENSG00000114030|ENST00000344337|KPNA1;KPNA6|p.E517Dfs*11|1|0.17|ENSG00000025800|chr1:32170833-32170834|AA/-|frameshift_variant;ENSG00000025800|ENST00000373625|KPNA6;KHDRBS1-KPNA6|1|fusion;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000114030|ENST00000344337|KPNA1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	509.78371	1017.55287	-0.1298	-6.6172E-05	0.31086	0.00015847	0.18106	9.2301E-05	509.78388427512795	80.273	1.8272	77.933	77.563	79.391	-2.3399	-0.19113	0.00019388	NaN	150.36	76	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	995890			61324	3008;8657	50602	50648							0.044792673683673456
VMDSKIVQV	9	Oxidation (M)	_VM(Oxidation (M))DSKIVQV_		VM(1)DSKIVQV		VM(110)DSKIVQV	0	0	1		ENSG00000114030|ENST00000344337|KPNA1;KPNA6|p.E517Dfs*11|1|0.17|ENSG00000025800|chr1:32170833-32170834|AA/-|frameshift_variant;ENSG00000025800|ENST00000373625|KPNA6;KHDRBS1-KPNA6|1|fusion;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000114030|ENST00000344337|KPNA1;ENSG00000196911|ENST00000368564|KPNA5	ENSG00000114030|ENST00000344337|KPNA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.7822265625	2	517.781167	1033.54778	0.86489	0.00044782	-1.5738	-0.00081486	-0.70887	-0.00036704	518.281671868075	67.751	1.9638	64.261	63.888	65.852	-3.4902					131	39	4	0	0	0	0.060996	1	5012	5012		112.41	7.6644	1	4272300			61325	3008;8657	50602	50649	67187	67187		95			0.03234963505747146
VMDSVRRGAQL	11	Unmodified	_VMDSVRRGAQL_					0	0	0		nc|ENSG00000162552|P56705-2|WNT4;ENSG00000162552|ENST00000290167|WNT4	nc|ENSG00000162552|P56705-2|WNT4	nc|ENSG00000162552|P56705-2|WNT4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	412.2201232910156	3	411.22404	1230.65029	0.97323	0.00040021	0.18111	7.4478E-05	1.1543	0.00047469	411.22402853212395	59.714	0.29586	56.322	56.149	56.445	-3.392					6	5	2	0	0	0	0.025909	1	3994	3994		12.957	5.5578	1	11577			61326	6193	50603	50650	67188	67188					0.04419049297212041
VMEALLVGLA	10	Unmodified	_VMEALLVGLA_					0	0	0			REV__ENSG00000167716|ENST00000409644|WDR81	REV__ENSG00000167716|ENST00000409644|WDR81	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.33831787109375	2	508.296453	1014.57835	3.5664	0.0018128	4.3835	0.0022281	7.95	0.0040409	508.29845136399194	131.49	0.59839	129.99	129.63	130.23	-1.4932					16	12	2	0	0	0	0.026939	1	12630	12630		31.955	5.2619	1	11596	+		61327	21303	50604	50651	67189	67189					0.07164741890790083
VMEHVSKGNL	10	Oxidation (M)	_VM(Oxidation (M))EHVSKGNL_		VM(1)EHVSKGNL		VM(60)EHVSKGNL	0	0	1		nc|ENSG00000007264|P42679-3|MATK;ENSG00000007264|ENST00000310132|MATK;nc|ENSG00000007264|P42679-2|MATK	nc|ENSG00000007264|P42679-3|MATK	nc|ENSG00000007264|P42679-3|MATK	MULTI-MSMS	OvCa99_classI_Rep5	1	565.2913208007812	2	565.287148	1128.55974	2.0266	0.0011456	2.7605	0.0015605	4.7871	0.0027061	565.2886348795531	116.97	1.3813	116.97	116.68	118.06	0					79	29	4	0	0	0	0.45822	1	13377	13377		60.118	6.7668	1	9992600			61328	898	50605	50652	67190	67190		28			0.0006058024894173286
VMFCTLIVEK	10	Oxidation (M)	_VM(Oxidation (M))FCTLIVEK_		VM(1)FCTLIVEK		VM(48)FCTLIVEK	0	0	1			REV__tr|A0A7D6VS07|A0A7D6VS07_9CLOTLysEfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_03730PE=3SV=1	REV__tr|A0A7D6VS07|A0A7D6VS07_9CLOTLysEfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_03730PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	400.2117614746094	3	400.211861	1197.61375	1.5319	0.0006131	-2.5061	-0.001003	-0.97412	-0.00038985	400.2107666123062	32.378	0.73635	32.378	32.204	32.941	0					45	14	4	0	0	0	0.55109	1	1408	1408		47.96	10.148	1	593200	+		61329	31459	50606	50653	67191	67191		697			0.022850363562611165
VMFILAHEF	9	Unmodified	_VMFILAHEF_					0	0	0		tr|A0A553SJS4|A0A553SJS4_NIACIPeptidaseM48domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_17470PE=3SV=1	tr|A0A553SJS4|A0A553SJS4_NIACIPeptidaseM48domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_17470PE=3SV=1	tr|A0A553SJS4|A0A553SJS4_NIACIPeptidaseM48domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_17470PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.9617309570312	2	553.788795	1105.56304	-0.096432	-5.3403E-05	-0.59078	-0.00032717	-0.68721	-0.00038057	554.2917548585642	83.027	0.73263	80.344	80.124	80.857	-2.6829					22	14	2	0	0	0	0.027462	1	6899	6899		42.474	0	1	45845			61330	33539	50607	50654	67192	67192					0.014478750935722928
VMGKNLQVIL	10	Unmodified	_VMGKNLQVIL_					0	0	0		tr|A0A553SNU9|A0A553SNU9_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	tr|A0A553SNU9|A0A553SNU9_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	tr|A0A553SNU9|A0A553SNU9_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.8402709960938	2	557.836277	1113.658	1.5895	0.00088667	3.6599	0.0020416	5.2494	0.0029283	557.8380668895444	110.08	1.5782	108.48	108.23	109.8	-1.6011					66	29	4	0	0	0	0.43592	1	10128	10128		63.306	2.3343	1	235860			61331	33964	50608	50655	67193	67193					0.10571808564759522
VMGPGPPR	8	Unmodified	_VMGPGPPR_					0	0	0			REV__ENST00000258428.7_1_2:100081436-100106450:-|nuORF	REV__ENST00000258428.7_1_2:100081436-100106450:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	405.7192687988281	2	405.718173	809.421793	2.542	0.0010313	0.64154	0.00026028	3.1836	0.0012916	405.71835229560304	119.45	0.89767	119.45	119.19	120.09	0					32	21	2	0	0	0	0.72922	1	13702	13702		37.028	8.7742	1	324970	+		61332	23911	50609	50656	67194	67194					0.00945921510970038
VMGPGPPR	8	Unmodified	_VMGPGPPR_					0	0	0			REV__ENST00000258428.7_1_2:100081436-100106450:-|nuORF	REV__ENST00000258428.7_1_2:100081436-100106450:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	405.71868896484375	2	405.718173	809.421793	-0.3042	-0.00012342	1.8181	0.00073763	1.5139	0.00061421	405.7187689414806	119.3	1.6269	119.13	118.76	120.38	-0.17137					76	32	4	0	0	0	0.74679	1	11506	11506		28.254	5.2118	1	350390	+		61333	23911	50609	50656	67195	67195					0.00945921510970038
VMGPGPPR	8	Unmodified	_VMGPGPPR_					0	0	0			REV__ENST00000258428.7_1_2:100081436-100106450:-|nuORF	REV__ENST00000258428.7_1_2:100081436-100106450:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	405.7192077636719	2	405.718173	809.421793	1.9299	0.00078299	-0.41137	-0.0001669	1.5185	0.00061609	405.71788630934805	120.02	2.0709	118.99	118.68	120.75	-1.0271					79	40	4	0	0	0	0.72922	6	9118	9112;9118;9130;9136;9148;9168		37.028	7.1869	1	570100	+		61334	23911	50609	50656	67196;67197;67198;67199;67200;67201	67197					0.00945921510970038
VMGPGPPR	8	Unmodified	_VMGPGPPR_					0	0	0			REV__ENST00000258428.7_1_2:100081436-100106450:-|nuORF	REV__ENST00000258428.7_1_2:100081436-100106450:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	405.71759033203125	2	405.718173	809.421793	0.46862	0.00019013	0.9592	0.00038916	1.4278	0.00057929	405.71843883907457	120.34	1.7473	119	118.72	120.47	-1.3444					77	33	4	0	0	0	0.69415	1	11336	11336		44.531	2.0566	1	591240	+		61335	23911	50609	50656	67202	67202					0.00945921510970038
VMGRNAGWIAL	11	Unmodified	_VMGRNAGWIAL_					0	0	0		tr|A0A7D6VWM2|A0A7D6VWM2_9CLOTATP-dependent6-phosphofructokinaseOS=ClostridiumintestinaleOX=36845GN=pfkAPE=3SV=1	tr|A0A7D6VWM2|A0A7D6VWM2_9CLOTATP-dependent6-phosphofructokinaseOS=ClostridiumintestinaleOX=36845GN=pfkAPE=3SV=1	tr|A0A7D6VWM2|A0A7D6VWM2_9CLOTATP-dependent6-phosphofructokinaseOS=ClostridiumintestinaleOX=36845GN=pfkAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	594.8479614257812	2	594.321325	1186.6281	0.75707	0.00044994	-3.8215	-0.0022712	-3.0644	-0.0018213	594.3190025969327	159.89	0.64386	159.89	159.66	160.31	0					18	12	2	0	0	0	0.025416	1	18740	18740		26.693	0	1	69282			61336	35255	50610	50657	67203	67203					0.04224869619451965
VMGRRPRGV	9	Unmodified	_VMGRRPRGV_					0	0	0		ENST00000504102.5_1_17:47755419-47755581:-|nuORF	ENST00000504102.5_1_17:47755419-47755581:-|nuORF	ENST00000504102.5_1_17:47755419-47755581:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.24267578125	2	514.300727	1026.5869	1.7642	0.00090733	-4.083	-0.0020999	-2.3188	-0.0011925	514.2983030060814	82.885	0.5989	82.885	82.694	83.293	0					24	13	3	0	0	0	0.027449	1	8608	8608		60.294	7.9948	1	732610			61337	12872	50611	50658	67204	67204					0.0746715337063506
VMGRRPRGV	9	Unmodified	_VMGRRPRGV_					0	0	0		ENST00000504102.5_1_17:47755419-47755581:-|nuORF	ENST00000504102.5_1_17:47755419-47755581:-|nuORF	ENST00000504102.5_1_17:47755419-47755581:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.300727	1026.5869	-0.8648	-0.00044477	-4.3555	-0.00224	-5.2203	-0.0026848	514.2984040701915	84.055	1.1287	82.509	82.172	83.301	-1.5462	-0.13437	-0.00015127	NaN	50.025	30	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36855			61338	12872	50611	50658							0.0746715337063506
VMGRRPRGV	9	Unmodified	_VMGRRPRGV_					0	0	0		ENST00000504102.5_1_17:47755419-47755581:-|nuORF	ENST00000504102.5_1_17:47755419-47755581:-|nuORF	ENST00000504102.5_1_17:47755419-47755581:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	514.300727	1026.5869	1.1518	0.00059236	-3.8218	-0.0019656	-2.6701	-0.0013732	514.2989157529486	85.182	0.68181	82.536	81.978	82.66	-2.6463	-0.1076	0.00039762	NaN	50.025	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65398			61339	12872	50611	50658							0.0746715337063506
VMGSPVFPGY	10	Unmodified	_VMGSPVFPGY_					0	0	0			REV__sp|F5HDC7|US22_HCMVMTegumentproteinUS22OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US22PE=3SV=1	REV__sp|F5HDC7|US22_HCMVMTegumentproteinUS22OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US22PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	527.258056640625	2	527.257328	1052.5001	1.516	0.00079934	-2.6806	-0.0014134	-1.1646	-0.00061402	527.255945355817	135.1	3.2133	135.1	134.61	137.82	0					154	68	4	0	0	0	0.45225	2	15704	15704;15750		60.972	5.4677	1	1952100	+		61340	29402	50612	50659	67205;67206	67205					-0.024046906944477087
VMHRVIGLGL	10	Unmodified	_VMHRVIGLGL_					0	0	0		nc|ENSG00000153214|Q96K49-2|TMEM87B;ENSG00000153214|ENST00000283206|TMEM87B;TMEM87B|p.L329V|1|0.64|ENSG00000153214|chr2:112089671-112089671|C/G|missense_variant;ENST00000463427.5_1_2:112843607-112863481:+|nuORF	nc|ENSG00000153214|Q96K49-2|TMEM87B	nc|ENSG00000153214|Q96K49-2|TMEM87B	MULTI-MSMS	OvCa9_classI_Rep3	3	547.8263549804688	2	547.828786	1093.64302	-6.0458	-0.003312	1.7537	0.00096071	-4.2921	-0.0023513	547.8295905768617	154.78	1.79	153.77	152.92	154.71	-1.0076					93	40	3	0	0	0	0.71192	1	13253	13253		29.15	2.4566	1	69775			61341	5668	50613	50660	67207	67207					0.0999436148742916
VMICVVKRN	9	Oxidation (M)	_VM(Oxidation (M))ICVVKRN_		VM(1)ICVVKRN		VM(71)ICVVKRN	0	0	1			REV__nc|ENSG00000213676|Q99941-2|ATF6B	REV__nc|ENSG00000213676|Q99941-2|ATF6B	MULTI-MSMS	OvCa9_classI_Rep3	3	539.3002319335938	2	539.299004	1076.58346	1.4928	0.00080505	1.372	0.00073993	2.8648	0.001545	539.2997469536305	110.68	0.86591	109.54	109.29	110.16	-1.1444					45	16	4	0	0	0	0.22913	1	8006	8006		71.378	16.602	1	140400	+		61342	23266	50614	50661	67208	67208		543			0.048227224817310343
VMICVVKRN	9	Oxidation (M)	_VM(Oxidation (M))ICVVKRN_					0	0	1			REV__nc|ENSG00000213676|Q99941-2|ATF6B	REV__nc|ENSG00000213676|Q99941-2|ATF6B	MULTI-MATCH	OvCa99_classI_Rep5	1		2	539.299004	1076.58346	1.3009	0.00070158	2.8876	0.0015573	4.1885	0.0022588	539.3005805894361	109.76	0.58473	109.76	109.55	110.13	0	0.13236	0.00061337	NaN	71.378	27	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	602060	+		61343	23266	50614	50661				543			0.048227224817310343
VMIIMVWVM	9	Unmodified	_VMIIMVWVM_					0	0	0			REV__nc|ENSG00000129353|Q8IWA5-3|SLC44A2	REV__nc|ENSG00000129353|Q8IWA5-3|SLC44A2	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.2574462890625	2	561.299627	1120.5847	3.3454	0.0018778	1.1586	0.0006503	4.504	0.0025281	561.2999970029143	90.306	0.36047	90.306	90.101	90.462	0					14	8	2	0	0	0	0.027462	1	9672	9672		39.021	0	1	634600	+		61344	18895	50615	50662	67209	67209					0.029232205262815114
VMIVPGVVI	9	Oxidation (M)	_VM(Oxidation (M))IVPGVVI_		VM(1)IVPGVVI		VM(49)IVPGVVI	0	0	1			REV__tr|A0A553SP76|A0A553SP76_NIACIUracilpermeaseOS=NialliacirculansOX=1397GN=CEQ21_25850PE=3SV=1	REV__tr|A0A553SP76|A0A553SP76_NIACIUracilpermeaseOS=NialliacirculansOX=1397GN=CEQ21_25850PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	471.7917785644531	2	471.788264	941.561975	2.7072	0.0012772	3.3905	0.0015996	6.0977	0.0028768	471.7898142974739	75.388	1.3187	75.388	74.962	76.28	0					78	32	4	0	0	0	0.42921	1	7522	7522		49.211	6.3465	1	21316000	+		61345	30506	50616	50663	67210	67210		669			0.08885660724695299
VMKLQKKVQ	9	Unmodified	_VMKLQKKVQ_					0	0	0		ENST00000556340.1_1_9:139265151-139266545:-|nuORF;nc|ENSG00000289701|Q9H257-3|CARD9;nc|ENSG00000289701|Q9H257-2|CARD9;ENSG00000187796|ENST00000371732|CARD9	ENST00000556340.1_1_9:139265151-139266545:-|nuORF	ENST00000556340.1_1_9:139265151-139266545:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.318359375	2	551.344269	1100.67399	-1.0383	-0.00057247	-0.56627	-0.00031221	-1.6046	-0.00088468	551.3436023305247	49.966	0.17487	49.966	49.813	49.988	0					5	3	2	0	0	0	0.027462	1	3766	3766		27.882	0	1	75750			61346	8436	50617	50664	67211	67211					0.1276751480168059
VMKPPASL	8	Unmodified	_VMKPPASL_					0	0	0			REV__nc|ENSG00000166436|O15016-2|TRIM66	REV__nc|ENSG00000166436|O15016-2|TRIM66	MULTI-MSMS	OvCa99_classI_Rep5	1	421.7437438964844	2	421.743857	841.47316	2.1061	0.00088825	-3.4322	-0.0014475	-1.326	-0.00055925	421.74228463682323	98.096	0.72878	98.096	97.823	98.552	0					44	16	4	0	0	0	0.66704	1	10813	10813		50.025	0	1	4898000	+		61347	21193	50618	50665	67212	67212					0.04608245485007956
VMKQYGLGP	9	Unmodified	_VMKQYGLGP_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.75482177734375	2	496.76532	991.516088	0.11587	5.7558E-05	3.1694	0.0015745	3.2853	0.001632	496.7668253000473	115.76	0.89107	114.36	114.12	115.01	-1.3977					30	17	2	0	0	0	0.027462	1	10788	10788		18.324	0.95945	1	62598			61348	8824	50619	50666	67213	67213					0.01999015542435245
VMKQYGLGPN	10	Unmodified	_VMKQYGLGPN_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-SECPEP	OvCa9_classI_Rep3	3	552.8129272460938	2	553.786784	1105.55902	-0.027158	-1.504E-05	3.6735	0.0020343	3.6463	0.0020193	553.7891537857062	105.57	0.93724	104.22	104.04	104.98	-1.3482					26	17	3	0	0	0	0.026665	1	7483	7483		26.693	9.2249	1	38075			61349	8824	50620	50667	67214	67214					0.010457855998765808
VMKQYGLGPN	10	Unmodified	_VMKQYGLGPN_					0	0	0		nc|ENSG00000198522|Q9HCN4-4|GPN1;ENSG00000198522|ENST00000610189|GPN1;nc|ENSG00000198522|Q9HCN4-5|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	nc|ENSG00000198522|Q9HCN4-4|GPN1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	553.786784	1105.55902	-0.43507	-0.00024093	2.1662	0.0011996	1.7311	0.00095867	553.788056987222	106.26	0.45483	104.25	104.05	104.51	-2.0161	0.010717	-0.00027486	NaN	32.812	20	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36981			61350	8824	50620	50667							0.010457855998765808
VMLAVDEDSL	10	Unmodified	_VMLAVDEDSL_					0	0	0			REV__ENSG00000100365|ENST00000248899|NCF4	REV__ENSG00000100365|ENST00000248899|NCF4	MULTI-MSMS	OvCa99_classI_Rep5	1	546.26708984375	2	546.26809	1090.52163	1.2806	0.00069953	-1.9539	-0.0010673	-0.67332	-0.00036781	546.2670208488718	147.09	0.49049	147.09	146.87	147.36	0					21	9	3	0	0	0	0.56767	1	17211	17211		45.952	1.8352	1	122390	+		61351	17407	50621	50668	67215	67215					-0.020013504564076356
VMLDVPIRL	9	Unmodified	_VMLDVPIRL_					0	0	0		nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	MSMS	OvCa99_classI_Rep5	1	528.3189086914062	2	528.31772	1054.62089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.42	1	128.42	127.92	128.92	0								0	0	0	0.07114	1	14880	14880		75.043	27.386	1				61352	1530	50622	50669	67216	67216					0.0957613701898481
VMLDVPIRL	9	Unmodified	_VMLDVPIRL_					0	0	0		nc|ENSG00000075391|Q9UJF2|RASAL2;ENSG00000075391|ENST00000367649|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	nc|ENSG00000075391|Q9UJF2|RASAL2	MSMS	OvCa99_classI_Rep5	1	528.318359375	2	528.31772	1054.62089	NaN	NaN	NaN	NaN	NaN	NaN	NaN	128.6	1	128.6	128.1	129.1	0								0	0	0	0.094478	1	14903	14903		71.877	15.156	1				61353	1530	50622	50669	67217	67217					0.0957613701898481
VMLGIIAGKN	10	Unmodified	_VMLGIIAGKN_					0	0	0			REV__nc|ENSG00000142192|P05067-10|APP	REV__nc|ENSG00000142192|P05067-10|APP	MULTI-MSMS	OvCa9_classI_Rep2	2	508.3015441894531	2	508.30207	1014.58959	1.4265	0.00072511	-2.1448	-0.0010902	-0.71825	-0.00036509	508.30093068725466	90.387	2.8271	89.085	88.433	91.26	-1.302					94	54	2	0	0	0	0.50656	1	7968	7968		53.351	7.3792	1	695110	+		61354	19774	50623	50670	67218	67218					0.08287563984913504
VMLLENIIL	9	Unmodified	_VMLLENIIL_					0	0	0		ENSG00000275591|ENST00000618742|XKR5	ENSG00000275591|ENST00000618742|XKR5	ENSG00000275591|ENST00000618742|XKR5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.2979736328125	2	529.319928	1056.6253	-1.2918	-0.0006838	-2.9422	-0.0015573	-4.234	-0.0022411	529.3186819657622	40.093	1.063	37.138	36.517	37.58	-2.9541					35	20	3	0	0	0	0.027462	1	1637	1637		12.207	0	1	32387			61355	9573	50624	50671	67219	67219					0.09925601441909748
VMLLENIIL	9	Unmodified	_VMLLENIIL_					0	0	0		ENSG00000275591|ENST00000618742|XKR5	ENSG00000275591|ENST00000618742|XKR5	ENSG00000275591|ENST00000618742|XKR5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	529.319928	1056.6253	-0.72527	-0.0003839	-0.34201	-0.00018103	-1.0673	-0.00056493	529.3200123230159	40.225	0.69488	37.515	37.202	37.897	-2.7097	0.1885	0.0021311	NaN	12.207	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12812			61356	9573	50624	50671							0.09925601441909748
VMLLSVEIK	9	Unmodified	_VMLLSVEIK_					0	0	0			REV__tr|A0A553SIC1|A0A553SIC1_NIACIPTSlactose/cellobiosetransportersubunitIIAOS=NialliacirculansOX=1397GN=CEQ21_14550PE=4SV=1	REV__tr|A0A553SIC1|A0A553SIC1_NIACIPTSlactose/cellobiosetransportersubunitIIAOS=NialliacirculansOX=1397GN=CEQ21_14550PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.31396484375	2	516.312103	1030.60965	0.22946	0.00011847	3.5411	0.0018283	3.7706	0.0019468	516.3138686677379	161.44	1.3688	161.44	161.11	162.48	0					57	26	4	0	0	0	0.58665	1	19005	19005		33.516	1.5607	1	928880	+		61357	29881	50625	50672	67220	67220					0.09557314924859384
VMLLSYSI	8	Unmodified	_VMLLSYSI_					0	0	0			REV__tr|A0A553SUH9|A0A553SUH9_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_00075PE=3SV=1	REV__tr|A0A553SUH9|A0A553SUH9_NIACIIronABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_00075PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	463.7402648925781	2	463.256797	924.499041	0.05141	2.3816E-05	2.0353	0.00094285	2.0867	0.00096667	463.2579350941941	72.625	0.7856	70.225	69.697	70.483	-2.3999					22	14	2	0	0	0	0.028476	1	5887	5887		28.254	0	1	15548	+		61358	31081	50626	50673	67221	67221					0.03377094936638514
VMLLVSLLM	9	Unmodified	_VMLLVSLLM_					0	0	0			REV__ENSG00000125895|ENST00000429036|TMEM74B	REV__ENSG00000125895|ENST00000429036|TMEM74B	MULTI-MSMS	OvCa9_classI_Rep2	2	509.802490234375	2	509.805599	1017.59665	-0.41042	-0.00020923	-3.1769	-0.0016196	-3.5873	-0.0018288	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.6653	1	13429	13429		24.203	2.2429	1	150140	+		61359	18756	50627	50674	67222	67222					0.08855160541133955
VMLPRLCL	8	Unmodified	_VMLPRLCL_					0	0	0		ENSG00000283654|ENST00000637218|CIROP	ENSG00000283654|ENST00000637218|CIROP	ENSG00000283654|ENST00000637218|CIROP	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.80352783203125	2	472.774634	943.534715	0.72678	0.0003436	-1.7754	-0.00083936	-1.0486	-0.00049575	472.77349084925964	67.156	0.47127	67.156	66.977	67.448	0					17	11	2	0	0	0	0.028476	1	6251	6251		46.766	24.807	1	531150			61360	9617	50628	50675	67223	67223					0.060688539126317664
VMLPTGRII	9	Unmodified	_VMLPTGRII_					0	0	0			REV__tr|A0A7D6ZK53|A0A7D6ZK53_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11185PE=3SV=1	REV__tr|A0A7D6ZK53|A0A7D6ZK53_9CLOTAminoacidABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11185PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.3053894042969	2	500.304613	998.594672	0.68695	0.00034369	-0.83476	-0.00041763	-0.1478	-7.3947E-05	500.3040616545028	96.797	1.7137	94.371	93.964	95.678	-2.4256					76	33	4	0	0	0	0.068524	1	8559	8559		108.09	6.4868	1	779060	+		61361	32099	50629	50676	67224	67224					0.09531867847545072
VMLVGKWDGG	10	Unmodified	_VMLVGKWDGG_					0	0	0			REV__tr|A0A553SS39|A0A553SS39_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_02205PE=4SV=1	REV__tr|A0A553SS39|A0A553SS39_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=CEQ21_02205PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.2757568359375	2	531.276052	1060.53755	-0.046814	-2.4871E-05	0.45211	0.00024019	0.40529	0.00021532	531.2761980218208	86.656	1.3398	84.03	83.613	84.952	-2.6269					70	26	3	0	0	0	0.53885	1	7327	7327		49.442	7.0454	1	1610400	+		61362	30801	50630	50677	67225	67225					0.00970400571168284
VMLYMRNVS	9	Unmodified	_VMLYMRNVS_					0	0	0		nc|ENSG00000179709|Q86W28-2|NLRP8;ENSG00000179709|ENST00000291971|NLRP8	nc|ENSG00000179709|Q86W28-2|NLRP8	nc|ENSG00000179709|Q86W28-2|NLRP8	MULTI-MSMS	OvCa99_classI_Rep5	1	556.78271484375	2	556.783187	1111.55182	0.103	5.7349E-05	0.4003	0.00022288	0.5033	0.00028023	556.7833361106095	22.771	0.67963	22.771	22.617	23.297	0					38	14	4	0	0	0	0.69895	1	290	290		18.324	0	1	956040			61363	7838	50631	50678	67226	67226					0.0005072972778634721
VMNVKKQTQK	10	Unmodified	_VMNVKKQTQK_					0	0	0		ENST00000479516.1_1_6:37321940-37337593:+|nuORF;nc|ENSG00000112130|O76064-3|RNF8;ENST00000229866.10_1_6:37328318-37358531:+|nuORF;ENSG00000112130|ENST00000373479|RNF8	ENST00000479516.1_1_6:37321940-37337593:+|nuORF	ENST00000479516.1_1_6:37321940-37337593:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	603.2870483398438	2	602.34754	1202.68053	0.35791	0.00021559	-0.22982	-0.00013843	0.12809	7.7152E-05	602.3476681775786	92.066	0.68364	90.83	90.272	90.956	-1.2355					16	12	2	0	0	0	0.026931	1	8178	8178		37.812	11.119	1	14513			61364	2878	50632	50679	67227	67227					0.08729407962391633
VMPLVPGLLI	10	Unmodified	_VMPLVPGLLI_					0	0	0		tr|A0A553SHZ7|A0A553SHZ7_NIACIThreonine/serineexporterOS=NialliacirculansOX=1397GN=CEQ21_13920PE=3SV=1	tr|A0A553SHZ7|A0A553SHZ7_NIACIThreonine/serineexporterOS=NialliacirculansOX=1397GN=CEQ21_13920PE=3SV=1	tr|A0A553SHZ7|A0A553SHZ7_NIACIThreonine/serineexporterOS=NialliacirculansOX=1397GN=CEQ21_13920PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.333251953125	2	526.332839	1050.65112	-2.291	-0.0012058	1.7658	0.00092941	-0.5252	-0.00027643	526.3335579094949	147.21	1.1944	145.78	145.58	146.78	-1.4351					55	23	3	0	0	0	0.65806	1	14514	14514		35.201	0	1	87130			61365	33330	50633	50680	67228	67228					0.1278249568422325
VMPLVPGLLI	10	Unmodified	_VMPLVPGLLI_					0	0	0		tr|A0A553SHZ7|A0A553SHZ7_NIACIThreonine/serineexporterOS=NialliacirculansOX=1397GN=CEQ21_13920PE=3SV=1	tr|A0A553SHZ7|A0A553SHZ7_NIACIThreonine/serineexporterOS=NialliacirculansOX=1397GN=CEQ21_13920PE=3SV=1	tr|A0A553SHZ7|A0A553SHZ7_NIACIThreonine/serineexporterOS=NialliacirculansOX=1397GN=CEQ21_13920PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	526.332839	1050.65112	-4.2514	-0.0022377	3.4181	0.001799	-0.83335	-0.00043862	526.3344058124075	146.86	1.0513	145.9	145.59	146.64	-0.95947	0.061392	0.00094875	NaN	35.201	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40496			61366	33330	50633	50680							0.1278249568422325
VMPSSSRCGD	10	Unmodified	_VMPSSSRCGD_					0	0	0		ENST00000394965.6_1_3:52232228-52232839:+|nuORF	ENST00000394965.6_1_3:52232228-52232839:+|nuORF	ENST00000394965.6_1_3:52232228-52232839:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.8115234375	2	519.720784	1037.42701	-0.028522	-1.4824E-05	4.0307	0.0020948	4.0022	0.00208	520.2261996377649	98.489	0.31108	96.729	96.623	96.934	-1.7595					6	5	2	0	0	0	0.026688	1	6571	6571		49.442	6.5773	1	4604.1			61367	11279	50634	50681	67229	67229					-0.09020187479382002
VMQILAIDL	9	Unmodified	_VMQILAIDL_					0	0	0		tr|A0A7D7AB64|A0A7D7AB64_9CLOTCation-transportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14125PE=4SV=1	tr|A0A7D7AB64|A0A7D7AB64_9CLOTCation-transportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14125PE=4SV=1	tr|A0A7D7AB64|A0A7D7AB64_9CLOTCation-transportingP-typeATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14125PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	508.2966003417969	2	508.296453	1014.57835	0.56082	0.00028506	1.2912	0.00065631	1.852	0.00094138	508.2969585173289	45.601	1.7481	45.601	45.373	47.121	0					89	39	5	0	0	0	0.21231	1	3197	3197		74.255	2.3776	1	25234000			61368	36215	50635	50682	67230	67230					0.07164741890778714
VMQRNASVP	9	Unmodified	_VMQRNASVP_					0	0	0		nc|ENSG00000117640|Q9H019-2|MTFR1L;nc|ENSG00000117640|Q9H019-3|MTFR1L;ENSG00000117640|ENST00000374303|MTFR1L	nc|ENSG00000117640|Q9H019-2|MTFR1L	nc|ENSG00000117640|Q9H019-2|MTFR1L	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.3041687011719	2	501.263476	1000.5124	-0.58549	-0.00029349	-4.1373	-0.0020739	-4.7228	-0.0023673	501.26126486534156	95.473	0.84371	94.445	94.169	95.013	-1.0281					22	16	2	0	0	0	0.027091	1	8587	8587		94.006	39.23	1	16712			61369	3270	50636	50683	67231	67231					0.012163457685801404
VMQSAKLPRSI	11	Unmodified	_VMQSAKLPRSI_					0	0	0			REV__ENSG00000135913|ENST00000258399|USP37	REV__ENSG00000135913|ENST00000258399|USP37	MULTI-MSMS	OvCa99_classI_Rep5	1	615.3580322265625	2	615.355365	1228.69618	1.7493	0.0010765	4.044	0.0024885	5.7933	0.003565	615.35783660833	125.76	1.8636	125.76	125.45	127.32	0					122	40	5	0	0	0	0.69099	1	14621	14621		32.751	1.2207	1	4289000	+		61370	19334	50637	50684	67232	67232					0.09097694479441998
VMQTILKVFK	10	Unmodified	_VMQTILKVFK_					0	0	0			REV__tr|A0A7D6ZW54|A0A7D6ZW54_9CLOTPhosphatepropanoyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17660PE=3SV=1	REV__tr|A0A7D6ZW54|A0A7D6ZW54_9CLOTPhosphatepropanoyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17660PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.928955078125	3	402.914143	1205.7206	0.8632	0.0003478	-3.9686	-0.001599	-3.1054	-0.0012512	402.91310380038055	51.75	0.244	51.75	51.627	51.871	0					9	5	2	0	0	0	0.027062	1	4024	4024		20.03	0	1	69868	+		61371	32272	50638	50685	67233	67233					0.12596954632931556
VMRALVTFG	9	Unmodified	_VMRALVTFG_					0	0	0			REV__chr1:151185950-151194923|177|15.27|0.48|4.98|-|2|TE_info:AluSc8,AluSc8_dup1115,Alu,SINE,donor,+,151194923,151195210|VPS72,None|3	REV__chr1:151185950-151194923|177|15.27|0.48|4.98|-|2|TE_info:AluSc8,AluSc8_dup1115,Alu,SINE,donor,+,151194923,151195210|VPS72,None|3	MULTI-SECPEP	OvCa9_classI_Rep2	2	497.2543029785156	2	497.281137	992.547722	-0.52088	-0.00025902	3.3639	0.0016728	2.843	0.0014138	497.283153176436	77.179	0.98825	75.39	74.582	75.571	-1.7894					24	18	2	0	0	0	0.027164	1	6342	6342		79.451	13.022	1	39050	+		61372	15602	50639	50686	67234	67234					0.05115008296399992
VMRALVTFG	9	Unmodified	_VMRALVTFG_					0	0	0			REV__chr1:151185950-151194923|177|15.27|0.48|4.98|-|2|TE_info:AluSc8,AluSc8_dup1115,Alu,SINE,donor,+,151194923,151195210|VPS72,None|3	REV__chr1:151185950-151194923|177|15.27|0.48|4.98|-|2|TE_info:AluSc8,AluSc8_dup1115,Alu,SINE,donor,+,151194923,151195210|VPS72,None|3	MULTI-MATCH	OvCa99_classI_Rep5	1		2	497.281137	992.547722	2.4657	0.0012261	6.6993	0.0033314	9.165	0.0045576	497.28423743599393	75.449	0.35039	75.449	75.33	75.68	0	-0.019551	0.00088887	NaN	79.451	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	634600	+		61373	15602	50639	50686							0.05115008296399992
VMRATLPIL	9	Unmodified	_VMRATLPIL_					0	0	0			REV__ENSG00000188559|ENST00000202677|RALGAPA2	REV__ENSG00000188559|ENST00000202677|RALGAPA2	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.3142395019531	2	507.312438	1012.61032	-1.7035	-0.00086421	0.33404	0.00016946	-1.3695	-0.00069475	507.3130114268932	107.02	1.6679	105.14	104.7	106.36	-1.8785					81	32	5	0	0	0	0.22961	1	9780	9780		71.296	2.811	1	675170	+		61374	22718	50640	50687	67235	67235					0.10452154364600119
VMRGEFDSL	9	Unmodified	_VMRGEFDSL_					0	0	0		nc|ENSG00000082512|O00463-3|TRAF5;ENSG00000082512|ENST00000261464|TRAF5;nc|ENSG00000082512|O00463-2|TRAF5	nc|ENSG00000082512|O00463-3|TRAF5	nc|ENSG00000082512|O00463-3|TRAF5	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2859497070312	2	527.255317	1052.49608	-0.52622	-0.00027745	-3.7334	-0.0019684	-4.2596	-0.0022459	527.2536961286562	51.73	0.83428	51.73	51.248	52.083	0					16	10	3	0	0	0	0.027433	1	3976	3976		42.396	8.2236	1	419610			61375	1681	50641	50688	67236	67236					-0.02806780188166158
VMRLIGAGSL	10	Unmodified	_VMRLIGAGSL_					0	0	0			REV__SNX2|p.N286T|1|0.06|ENSG00000205302|chr5:122816973-122816973|A/C|missense_variant	REV__SNX2|p.N286T|1|0.06|ENSG00000205302|chr5:122816973-122816973|A/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	508.7972717285156	2	508.799694	1015.58484	-0.073799	-3.7549E-05	-3.3685	-0.0017139	-3.4423	-0.0017514	508.79781426148145	110.04	1.2366	109.86	109.56	110.8	-0.17236					63	24	4	0	0	0	0.70152	1	10368	10368		30.318	0.47618	1	341650	+		61376	23209	50642	50689	67237	67237					0.07766679842154645
VMRPQGHCN	9	Unmodified	_VMRPQGHCN_					0	0	0		nc|ENSG00000237515|B4DS77-2|SHISA9;ENSG00000237515|ENST00000558583|SHISA9	nc|ENSG00000237515|B4DS77-2|SHISA9	nc|ENSG00000237515|B4DS77-2|SHISA9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.3297729492188	2	521.239478	1040.4644	-1.3971	-0.00072823	3.5548	0.0018529	2.1576	0.0011247	521.2414649580189	124.6	0.62366	123.21	122.97	123.59	-1.3908					13	11	2	0	0	0	0.027462	1	11817	11817		23.042	3.6825	1	16373			61377	9318	50643	50690	67238	67238					-0.054210514231044726
VMRQSRRY	8	Unmodified	_VMRQSRRY_					0	0	0		nc|ENSG00000258289|Q8WUH1-3|CHURC1	nc|ENSG00000258289|Q8WUH1-3|CHURC1	nc|ENSG00000258289|Q8WUH1-3|CHURC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.77099609375	2	548.295642	1094.57673	-0.64866	-0.00035566	-0.11737	-6.4355E-05	-0.76603	-0.00042001	548.2958477970471	29.112	0.99685	29.112	28.888	29.885	0					28	19	2	0	0	0	0.028476	1	1088	1088		25.45	13.243	1	236880			61378	15358	50644	50691	67239	67239					0.03322545645391983
VMRRERRLEVP	11	Unmodified	_VMRRERRLEVP_					0	0	0			REV__nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	REV__nc|ENSG00000148308|Q9Y5Q8-2|GTF3C5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.76898193359375	3	480.945388	1439.81434	-0.05872	-2.8241E-05	-3.2713	-0.0015733	-3.33	-0.0016015	480.9439483394635	56.329	1.012	53.034	52.769	53.781	-3.2944					37	19	3	0	0	0	0.025995	1	3653	3653		29.551	2.801	1	54555	+		61379	20102	50645	50692	67240	67240					0.11202066787927834
VMSATFAKF	9	Unmodified	_VMSATFAKF_					0	0	0		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MSMS	OvCa99_classI_Rep5	1	501.26104736328125	2	501.259871	1000.50519	1.524	0.0007639	1.1294	0.0005661	2.6533	0.00133	501.2602681181521	92.376	0.58841	92.376	92.132	92.721	0					33	13	4	0	0	0	0.064985	1	9984	9984		110.12	33.273	1	1901400			61380	1571	50646	50693	67241	67241					0.004956131681524312
VMSATFAKF	9	Unmodified	_VMSATFAKF_					0	0	0		nc|ENSG00000077380|Q13409-6|DYNC1I2;nc|ENSG00000077380|Q13409-3|DYNC1I2;nc|ENSG00000077380|Q13409-7|DYNC1I2;nc|ENSG00000077380|Q13409-2|DYNC1I2;nc|ENSG00000077380|Q13409-5|DYNC1I2;ENSG00000077380|ENST00000397119|DYNC1I2;ENST00000435916.1_1_10:52025510-52026503:+|nuORF;ENST00000479806.1_1_2:172583261-172604396:+|nuORF	nc|ENSG00000077380|Q13409-6|DYNC1I2	nc|ENSG00000077380|Q13409-6|DYNC1I2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	501.259871	1000.50519	-1.0737	-0.00053822	-4.6033	-0.0023075	-5.677	-0.0028457	501.2573710651494	94.326	0.35696	92.431	92.204	92.561	-1.8956	0.027439	-0.0053088	NaN	110.12	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12592			61381	1571	50646	50693							0.004956131681524312
VMSLYIKPP	9	Unmodified	_VMSLYIKPP_					0	0	0			REV__ENST00000579809.1_1_17:77080425-77082428:+|nuORF	REV__ENST00000579809.1_1_17:77080425-77082428:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	524.2984008789062	2	524.298996	1046.58344	0.32036	0.00016797	-0.87925	-0.00046099	-0.55889	-0.00029302	524.2978910059531	101.88	0.98295	101.88	101.61	102.59	0					52	22	3	0	0	0	0.12365	1	11359	11359		90.777	8.4716	1	1384200	+		61382	21266	50647	50694	67242	67242					0.06201045753391554
VMSNPKLLLL	10	Unmodified	_VMSNPKLLLL_					0	0	0		tr|A0A7D6VWR9|A0A7D6VWR9_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09350PE=4SV=1	tr|A0A7D6VWR9|A0A7D6VWR9_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09350PE=4SV=1	tr|A0A7D6VWR9|A0A7D6VWR9_9CLOTATP-bindingcassettedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_09350PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.324462890625	2	564.346477	1126.6784	1.0322	0.00058251	-1.0945	-0.00061766	-0.062272	-3.5143E-05	564.3458741574048	102.85	0.36732	100.65	100.46	100.83	-2.1994					11	6	2	0	0	0	0.026714	1	9254	9254		60.118	12.461	1	26573			61383	35259	50648	50695	67243	67243					0.12012979224596165
VMSPLRTLL	9	Unmodified	_VMSPLRTLL_					0	0	0		nc|ENSG00000205853|P0C7P2|RFPL3S	nc|ENSG00000205853|P0C7P2|RFPL3S	nc|ENSG00000205853|P0C7P2|RFPL3S	MULTI-MSMS	OvCa9_classI_Rep2	2	515.30810546875	2	515.309895	1028.60524	-0.149	-7.6783E-05	-1.2403	-0.00063914	-1.3893	-0.00071593	515.309204834114	98.038	3.959	97.145	96.727	100.69	-0.89306					142	79	4	0	0	0	0.10502	5	8896	8865;8871;8884;8896;8902		95.815	0	1	1571300			61384	15278	50649	50696	67244;67245;67246;67247;67248	67247					0.0920785050197992
VMSPLRTLL	9	Unmodified	_VMSPLRTLL_					0	0	0		nc|ENSG00000205853|P0C7P2|RFPL3S	nc|ENSG00000205853|P0C7P2|RFPL3S	nc|ENSG00000205853|P0C7P2|RFPL3S	MULTI-MSMS	OvCa9_classI_Rep3	3	515.3095703125	2	515.309895	1028.60524	0.30761	0.00015851	-1.2081	-0.00062256	-0.90052	-0.00046405	515.309244982381	98.929	1.4912	97.244	96.852	98.344	-1.685					68	28	3	0	0	0	0.2077	3	6604	6604;6616;6622		75.043	5.3471	1	2164600			61385	15278	50649	50696	67249;67250;67251	67249					0.0920785050197992
VMSPLRTLL	9	Unmodified	_VMSPLRTLL_					0	0	0		nc|ENSG00000205853|P0C7P2|RFPL3S	nc|ENSG00000205853|P0C7P2|RFPL3S	nc|ENSG00000205853|P0C7P2|RFPL3S	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.3096313476562	2	515.309895	1028.60524	-0.86395	-0.0004452	-0.36811	-0.00018969	-1.2321	-0.00063489	515.3096728727091	99.459	2.081	97.134	96.743	98.824	-2.3253					63	40	2	0	0	0	0.2077	4	8864	8840;8852;8864;8888		75.043	5.3471	1	2107800			61386	15278	50649	50696	67252;67253;67254;67255	67254					0.0920785050197992
VMSQALKATF	10	Unmodified	_VMSQALKATF_					0	0	0		ENSG00000157557|ENST00000360938|ETS2;ETS2|p.Q294Hfs*119|1|0.06|ENSG00000157557|chr21:38819573-38819573|G/-|frameshift_variant	ENSG00000157557|ENST00000360938|ETS2	ENSG00000157557|ENST00000360938|ETS2	MULTI-MSMS	OvCa99_classI_Rep5	1	548.2985229492188	2	548.296985	1094.57942	1.8327	0.0010049	0.53169	0.00029153	2.3644	0.0012964	548.2972043385896	85.355	0.49731	85.355	85.127	85.624	0					26	11	3	0	0	0	0.24997	1	8947	8947		86.882	37.44	1	1738000			61387	5900	50650	50697	67256	67256					0.035909562596543765
VMSRLGGLIN	10	Unmodified	_VMSRLGGLIN_					0	0	0			REV__nc|ENSG00000125648|Q9BV35-4|SLC25A23	REV__nc|ENSG00000125648|Q9BV35-4|SLC25A23	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8005981445312	2	530.302601	1058.59065	2.1588	0.0011448	-2.5322	-0.0013428	-0.3734	-0.00019801	530.3011673187021	137.38	0.86844	137.38	136.87	137.74	0					25	17	2	0	0	0	0.026635	1	16020	16020		47.657	15.702	1	152440	+		61388	18735	50651	50698	67257	67257					0.06369778353837319
VMSVGVKRGL	10	Unmodified	_VMSVGVKRGL_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MSMS	OvCa99_classI_Rep5	1	523.31396484375	2	523.312969	1044.61138	-1.0339	-0.00054103	0.027548	1.4416E-05	-1.0063	-0.00052662	523.312924570406	37.798	0.86467	37.798	37.621	38.486	0					34	18	2	0	0	0	0.71192	1	2092	2092		29.15	0	1	1323500	+		61389	29089	50652	50699	67258	67258					0.09086368733483141
VMSVGVKRGL	10	Unmodified	_VMSVGVKRGL_					0	0	0			REV__nc|ENSG00000198198|Q5T011-5|SZT2	REV__nc|ENSG00000198198|Q5T011-5|SZT2	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	523.312969	1044.61138	-1.0339	-0.00054103	0.027548	1.4416E-05	-1.0063	-0.00052662	523.312924570406	37.798	0.86467	37.798	37.621	38.486	0	0	0	NaN	29.15	34	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1323500	+		61390	29089	50652	50699							0.09086368733483141
VMTEFLCYF	9	Carbamidomethyl (C),Oxidation (M)	_VM(Oxidation (M))TEFLC(Carbamidomethyl (C))YF_	VMTEFLC(1)YF	VM(1)TEFLCYF	VMTEFLC(89)YF	VM(89)TEFLCYF	0	1	1			REV__ENSG00000168389|ENST00000372811|MFSD2A	REV__ENSG00000168389|ENST00000372811|MFSD2A	MULTI-MSMS	OvCa99_classI_Rep5	1	613.2688598632812	2	613.267035	1224.51952	1.5355	0.0009417	0.2079	0.0001275	1.7434	0.0010692	613.2670653724402	147.33	2.0045	147.33	146.96	148.97	0					95	40	4	0	0	0	0.13154	1	17226	17226		88.643	31.922	1	839640	+		61391	21370	50653	50700	67259	67259	239	498			-0.08376102465877011
VMTIGFIILEK	11	Unmodified	_VMTIGFIILEK_					0	0	0		tr|A0A7D6ZXC1|A0A7D6ZXC1_9CLOTCation:protonantiporterOS=ClostridiumintestinaleOX=36845GN=HZF06_12775PE=4SV=1	tr|A0A7D6ZXC1|A0A7D6ZXC1_9CLOTCation:protonantiporterOS=ClostridiumintestinaleOX=36845GN=HZF06_12775PE=4SV=1	tr|A0A7D6ZXC1|A0A7D6ZXC1_9CLOTCation:protonantiporterOS=ClostridiumintestinaleOX=36845GN=HZF06_12775PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	421.9169006347656	3	421.917554	1262.73083	-0.4925	-0.00020779	-1.1911	-0.00050254	-1.6836	-0.00071033	421.9169855348621	20.547	1.6698	19.208	18.803	20.473	-1.3386					99	33	4	0	0	0	0.69308	1	108	108		32.034	4.3902	1	609660			61392	35872	50654	50701	67260	67260					0.10997517567534487
VMVFTVAFGM	10	Unmodified	_VMVFTVAFGM_					0	0	0			REV__tr|A0A7D6ZID5|A0A7D6ZID5_9CLOTIon-translocatingoxidoreductasecomplexsubunitAOS=ClostridiumintestinaleOX=36845GN=rsxAPE=3SV=1	REV__tr|A0A7D6ZID5|A0A7D6ZID5_9CLOTIon-translocatingoxidoreductasecomplexsubunitAOS=ClostridiumintestinaleOX=36845GN=rsxAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.2671508789062	2	551.277206	1100.53986	0.020012	1.1032E-05	3.3126	0.0018262	3.3326	0.0018372	551.2788445379371	57.24	0.6631	53.896	53.73	54.393	-3.3449					18	12	2	0	0	0	0.026939	1	3705	3705		24.203	5.0992	1	41279	+		61393	32051	50655	50702	67261	67261					-0.006388870154069082
VMVGMPFPNI	10	Unmodified	_VMVGMPFPNI_					0	0	0		nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9-3|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000256263|A8MPP1|DDX11L8;ENST00000435753.6_1_12:31250908-31256767:+|nuORF;nc|ENSG00000013573|Q96FC9|DDX11;ENST00000537136.1_1_12:31255149-31256026:+|nuORF;ENST00000536265.5_1_12:31242773-31256767:+|nuORF	nc|ENSG00000214826|Q92771|DDX12P;ENST00000536265.5_1_12:31242773-31256767:+|nuORF	nc|ENSG00000214826|Q92771|DDX12P	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.820556640625	2	552.782656	1103.55076	1.4142	0.00078176	0.95828	0.00052972	2.3725	0.0013115	553.2849835105928	130.56	0.43192	130.56	130.34	130.77	0					12	8	2	0	0	0	0.026982	1	15151	15151		16.473	0	1	55087			61394	15313;13388	50656	50703	67262	67262					0.003125153588825924
VMWVLAILF	9	Unmodified	_VMWVLAILF_					0	0	0			REV__PROKR2|p.Y311Sfs*13|1|0.36|ENSG00000101292|chr20:5302263-5302263|T/-|frameshift_variant	REV__PROKR2|p.Y311Sfs*13|1|0.36|ENSG00000101292|chr20:5302263-5302263|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	546.3199462890625	2	546.319731	1090.62491	-1.1603	-0.0006339	3.4446	0.0018818	2.2843	0.0012479	546.3212828896337	140.04	0.97914	139.81	139.5	140.48	-0.22696					42	19	3	0	0	0	0.42921	1	14003	14003		49.211	6.8147	1	96543	+		61395	17487	50657	50704	67263	67263					0.08322226512723319
VMWVLAILF	9	Unmodified	_VMWVLAILF_					0	0	0			REV__PROKR2|p.Y311Sfs*13|1|0.36|ENSG00000101292|chr20:5302263-5302263|T/-|frameshift_variant	REV__PROKR2|p.Y311Sfs*13|1|0.36|ENSG00000101292|chr20:5302263-5302263|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	546.3214111328125	2	546.319731	1090.62491	0.036943	2.0182E-05	2.3077	0.0012607	2.3446	0.0012809	546.3204746576425	141.32	3.3559	139.86	139.56	142.91	-1.4627					97	64	3	0	0	0	0.42921	1	13812	13812		49.211	3.2588	1	132850	+		61396	17487	50657	50704	67264	67264					0.08322226512723319
VMYERTAE	8	Unmodified	_VMYERTAE_					0	0	0			REV__tr|A0A553SST1|A0A553SST1_NIACILipoproteinYvcAOS=NialliacirculansOX=1397GN=CEQ21_03740PE=4SV=1	REV__tr|A0A553SST1|A0A553SST1_NIACILipoproteinYvcAOS=NialliacirculansOX=1397GN=CEQ21_03740PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	499.76495361328125	2	499.734217	997.453881	0.4718	0.00023577	-2.4088	-0.0012038	-1.937	-0.00096801	499.733081748408	126.54	0.49339	126.3	126.15	126.64	-0.2359					16	9	2	0	0	0	0.028476	1	12351	12351		30.504	18.297	1	8286.2	+		61397	30876	50658	50705	67265	67265					-0.04494755596556388
VMYHIKLN	8	Unmodified	_VMYHIKLN_					0	0	0		nc|ENSG00000152092|O14525-3|ASTN1;ENSG00000152092|ENST00000361833|ASTN1;nc|ENSG00000152092|O14525|ASTN1;ENST00000281881.7_1_1:176905297-177133812:-|nuORF	nc|ENSG00000152092|O14525-3|ASTN1	nc|ENSG00000152092|O14525-3|ASTN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.7727966308594	2	509.281137	1016.54772	2.392	0.0012182	1.7144	0.00087311	4.1064	0.0020913	509.2818925436544	76.15	0.53107	76.15	75.874	76.405	0					25	11	3	0	0	0	0.028476	1	7656	7656		8.8223	0	1	1278100			61398	5603	50659	50706	67266	67266					0.04011008296390628
VNAGPGVVP	9	Unmodified	_VNAGPGVVP_					0	0	0			REV__nc|ENSG00000170909|Q8IYS5-6|OSCAR	REV__nc|ENSG00000170909|Q8IYS5-6|OSCAR	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.9118347167969	2	405.229428	808.444303	0.85696	0.00034726	-1.3419	-0.00054377	-0.48492	-0.0001965	405.2286699898901	54.423	0.50314	54.423	54.172	54.675	0					17	11	3	0	0	0	0.027462	1	4361	4361		26.796	8.4717	1	163640	+		61399	21573	50660	50707	67267	67267					0.032418441802292364
VNAGRSILI	9	Unmodified	_VNAGRSILI_					0	0	0		tr|A0A553SJ83|A0A553SJ83_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_16305PE=4SV=1	tr|A0A553SJ83|A0A553SJ83_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_16305PE=4SV=1	tr|A0A553SJ83|A0A553SJ83_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_16305PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.7264709472656	2	471.790184	941.565815	0.59834	0.00028229	-0.43768	-0.00020649	0.16066	7.5798E-05	471.78976739935223	45.474	0.50903	45.474	45.245	45.754	0					23	11	3	0	0	0	0.027137	1	3119	3119		77.318	5.4401	1	475140			61400	33475	50661	50708	67268	67268					0.0926946654275298
VNARARIVAE	10	Unmodified	_VNARARIVAE_					0	0	0		ENSG00000241553|ENST00000397261|ARPC4;ENST00000467289.5_1_3:9834805-9845712:+|nuORF;nc|ENSG00000241553|P59998-3|ARPC4;ENST00000440787.5_1_3:9845376-9847896:+|nuORF;nc|ENSG00000241553|P59998-4|ARPC4	ENSG00000241553|ENST00000397261|ARPC4	ENSG00000241553|ENST00000397261|ARPC4	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.8651123046875	2	549.822547	1097.63054	-0.59356	-0.00032635	-0.29239	-0.00016076	-0.88595	-0.00048711	549.8223324619203	55.714	0.37268	55.714	55.559	55.932	0					14	8	2	0	0	0	0.026802	1	4596	4596		19.997	0	1	457610			61401	9352	50662	50709	67269	67269					0.08563041348725164
VNARIEEEN	9	Unmodified	_VNARIEEEN_					0	0	0			REV__ENST00000522843.5_1_8:59477592-59488665:+|nuORF	REV__ENST00000522843.5_1_8:59477592-59488665:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	537.2659912109375	2	537.264727	1072.5149	1.5965	0.00085776	-2.5222	-0.0013551	-0.92571	-0.00049735	537.2632206474979	106.63	1.7205	105.36	105.01	106.73	-1.267					78	33	4	0	0	0	0.38529	1	7531	7531		53.351	2.016	1	642900	+		61402	19463	50663	50710	67270	67270					-0.018455272927667465
VNASYQFKQK	10	Unmodified	_VNASYQFKQK_					0	0	0			REV__HFM1|p.F1400Lfs*25|1|0.44|ENSG00000162669|chr1:91262279-91262279|A/-|frameshift_variant	REV__HFM1|p.F1400Lfs*25|1|0.44|ENSG00000162669|chr1:91262279-91262279|A/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.9142761230469	3	404.8839	1211.62987	0.74833	0.00030299	-3.4203	-0.0013848	-2.672	-0.0010818	404.8825216935018	29.085	0.29974	29.085	28.937	29.237	0					8	5	2	0	0	0	0.02706	1	994	994		12.433	3.2499	1	19154	+		61403	20763	50664	50711	67271	67271					0.03252201909026553
VNCVGTELLL	10	Unmodified	_VNCVGTELLL_					0	0	0			REV__nc|ENSG00000132854|Q5T7N3-2|KANK4	REV__nc|ENSG00000132854|Q5T7N3-2|KANK4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.7999267578125	2	530.788992	1059.56343	-1.2745	-0.00067647	-1.5533	-0.00082448	-2.8278	-0.001501	530.7880779385372	101.8	0.55717	99.531	99.208	99.765	-2.2665					19	10	2	0	0	0	0.026659	1	9160	9160		45.972	0	1	39763	+		61404	19109	50665	50712	67272	67272					0.03603250022774773
VNEDDFSH	8	Unmodified	_VNEDDFSH_					0	0	0			REV__tr|A0A553SN73|A0A553SN73_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23845PE=4SV=1	REV__tr|A0A553SN73|A0A553SN73_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23845PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	481.78802490234375	2	481.696146	961.377739	-0.68226	-0.00032864	1.454	0.00070038	0.77172	0.00037173	481.6967260688915	81.99	0.75263	79.694	79.434	80.187	-2.2963					21	14	2	0	0	0	0.028476	1	4635	4635		18.324	0	1	18957	+		61405	30398	50666	50713	67273	67273					-0.10449436172325477
VNELTELEALK	11	Unmodified	_VNELTELEALK_					0	0	0		tr|A0A553SKK3|A0A553SKK3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_19000PE=4SV=1	tr|A0A553SKK3|A0A553SKK3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_19000PE=4SV=1	tr|A0A553SKK3|A0A553SKK3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_19000PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	629.8488159179688	2	629.848093	1257.68163	-0.69017	-0.0004347	1.11	0.00069914	0.41984	0.00026444	629.8483567605704	92.117	2.5423	90.093	89.534	92.076	-2.0241					118	51	3	0	0	0	0.41331	1	5840	5840		42.864	3.6114	1	1135500			61406	33625	50667	50714	67274	67274					0.06309900812266278
VNEYKKILL	9	Unmodified	_VNEYKKILL_					0	0	0		ENSG00000163563|ENST00000368141|MNDA;ENST00000491210.1_1_1:158811943-158812264:+|nuORF	ENSG00000163563|ENST00000368141|MNDA	ENSG00000163563|ENST00000368141|MNDA	MULTI-MSMS	OvCa9_classI_Rep2	2	560.33984375	2	560.342249	1118.66995	-4.5115	-0.002528	1.2493	0.00070003	-3.2622	-0.001828	560.3427660344651	160.69	1.3876	160.47	160.23	161.62	-0.22697					59	27	4	0	0	0	0.6653	1	16391	16391		24.203	2.2429	1	170910			61407	6327	50668	50715	67275	67275					0.11535748579603933
VNFHNKAH	8	Unmodified	_VNFHNKAH_					0	0	0			REV__tr|A0A7D6ZUA4|A0A7D6ZUA4_9CLOTRubrerythrinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23345PE=4SV=1	REV__tr|A0A7D6ZUA4|A0A7D6ZUA4_9CLOTRubrerythrinfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23345PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.6365661621094	2	483.74885	965.483148	1.7155	0.00082988	3.4091	0.0016491	5.1246	0.002479	483.75037935205313	125.39	0.31572	125.39	125.17	125.49	0					15	8	2	0	0	0	0.028476	1	14491	14491		19.36	1.0356	1	95406	+		61408	32217	50669	50716	67276	67276					-0.0009743046539369971
VNFIQSSQQY	10	Unmodified	_VNFIQSSQQY_					0	0	0		ENSG00000143669|ENST00000389793|LYST;ENST00000473037.5_1_1:235826242-235897989:-|nuORF	ENSG00000143669|ENST00000389793|LYST	ENSG00000143669|ENST00000389793|LYST	MULTI-SECPEP	OvCa9_classI_Rep4_	4	607.8488159179688	2	607.296027	1212.5775	-0.18809	-0.00011423	0.025134	1.5264E-05	-0.16295	-9.8961E-05	607.2962305278965	70.471	0.86728	66.99	66.688	67.555	-3.4812					29	17	3	0	0	0	0.026849	1	5312	5312		49.442	0	1	67422			61409	5084	50670	50717	67277	67277					-0.020283812245679655
VNFPFLNVQ	9	Unmodified	_VNFPFLNVQ_					0	0	0			REV__ENST00000471743.1_1_2:26435372-26437931:-|nuORF	REV__ENST00000471743.1_1_2:26435372-26437931:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.8624877929688	2	539.290017	1076.56548	2.6895	0.0014504	1.6696	0.00090038	4.3591	0.0023508	539.793174917465	133.55	0.73245	132.02	131.76	132.49	-1.5257					16	14	2	0	0	0	0.027462	1	12869	12869		23.042	4.7181	1	21135	+		61410	26292	50671	50718	67278	67278					0.030260468229016624
VNFSEEIAK	9	Unmodified	_VNFSEEIAK_					0	0	0		tr|A0A7D6VTZ8|A0A7D6VTZ8_9CLOTArgininebiosynthesisbifunctionalproteinArgJOS=ClostridiumintestinaleOX=36845GN=argJPE=3SV=1	tr|A0A7D6VTZ8|A0A7D6VTZ8_9CLOTArgininebiosynthesisbifunctionalproteinArgJOS=ClostridiumintestinaleOX=36845GN=argJPE=3SV=1	tr|A0A7D6VTZ8|A0A7D6VTZ8_9CLOTArgininebiosynthesisbifunctionalproteinArgJOS=ClostridiumintestinaleOX=36845GN=argJPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.2901611328125	2	518.769114	1035.52368	-1.3479	-0.00069924	-2.6286	-0.0013636	-3.9765	-0.0020629	518.767720998797	27.506	1.7465	27.506	26.942	28.688	0					62	34	2	0	0	0	0.027461	1	791	791		49.442	13.823	1	62409			61411	35155	50672	50719	67279	67279					0.007334463437246086
VNGGARRPVLI	11	Unmodified	_VNGGARRPVLI_					0	0	0			REV__nc|ENSG00000196123|Q68EN5-3|MATCAP1	REV__nc|ENSG00000196123|Q68EN5-3|MATCAP1	MULTI-MSMS	OvCa9_classI_Rep2	2	576.3539428710938	2	576.354014	1150.69348	-0.29031	-0.00016732	-0.5669	-0.00032673	-0.85721	-0.00049406	576.3537371528553	71.759	4.075	69.252	68.91	72.985	-2.5071					188	77	5	0	0	0	0.50928	2	5823	5823;5838		52.937	12.159	1	5146300	+		61412	27637	50673	50720	67280;67281	67280					0.12415607136813378
VNGGGRLF	8	Unmodified	_VNGGGRLF_					0	0	0		tr|A0A7D7AE40|A0A7D7AE40_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01385PE=4SV=1	tr|A0A7D7AE40|A0A7D7AE40_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01385PE=4SV=1	tr|A0A7D7AE40|A0A7D7AE40_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01385PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	410.22882080078125	2	410.22722	818.439886	3.0939	0.0012692	-0.7349	-0.00030147	2.359	0.00096774	410.2268245154275	90.429	1.0632	90.429	90.269	91.332	0					40	26	2	0	0	0	0.71369	1	9703	9703		40.573	0	1	867990			61413	36246	50674	50721	67282	67282					0.02340379757310984
VNGHETLQLY	10	Unmodified	_VNGHETLQLY_					0	0	0			REV__ENSG00000109182|ENST00000226432|CWH43	REV__ENSG00000109182|ENST00000226432|CWH43	MULTI-MSMS	OvCa9_classI_Rep2	2	587.295166015625	2	587.29857	1172.58259	-1.7713	-0.0010403	-4.2549	-0.0024989	-6.0262	-0.0035392	587.2959419520926	118.58	1.9781	118.43	118.08	120.06	-0.14754					123	39	5	0	0	0	0.49558	1	11375	11375		54.776	12.38	1	499840	+		61414	17924	50675	50722	67283	67283					0.003199226380502296
VNGRLLLTL	9	Unmodified	_VNGRLLLTL_					0	0	0		nc|ENSG00000103429|Q9NZS9-2|BFAR;BFAR|p.I364Sfs*23|1|0.05|ENSG00000103429|chr16:14665001-14665001|A/-|frameshift_variant;ENSG00000103429|ENST00000261658|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	nc|ENSG00000103429|Q9NZS9-2|BFAR	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.2923889160156	2	499.821484	997.628415	2.2242	0.0011117	0.89501	0.00044735	3.1192	0.001559	499.82157666671725	106.51	0.66428	106.51	106.14	106.81	0					35	14	3	0	0	0	0.02741	1	11965	11965		42.396	3.1433	1	450080			61415	148	50676	50723	67284	67284					0.1295061261095043
VNGYIRIAL	9	Unmodified	_VNGYIRIAL_					0	0	0		nc|ENSG00000266200|P54317|PNLIPRP2	nc|ENSG00000266200|P54317|PNLIPRP2	nc|ENSG00000266200|P54317|PNLIPRP2	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8034362792969	2	509.805834	1017.59712	-0.41042	-0.00020923	-3.6368	-0.0018541	-4.0473	-0.0020633	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.69895	1	13524	13524		18.324	3.6603	1	150140			61416	15367	50677	50724	67285	67285					0.08902039576821608
VNICLQNLI	9	Unmodified	_VNICLQNLI_					0	0	0		nc|ENSG00000228727|Q5SSQ6|SAPCD1;ENSG00000228727|ENST00000415669|SAPCD1;ENST00000476085.1_3_6:31731200-31732414:+|nuORF	nc|ENSG00000228727|Q5SSQ6|SAPCD1	nc|ENSG00000228727|Q5SSQ6|SAPCD1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.2951049804688	2	515.291702	1028.56885	1.3011	0.00067042	-2.7181	-0.0014006	-1.417	-0.00073017	515.2902648335682	123.04	0.41808	123.04	122.81	123.23	0					16	8	3	0	0	0	0.48324	1	14189	14189		44.117	8.4985	1	89929			61417	9281	50678	50725	67286	67286					0.05570973605267682
VNIDLVIEKLV	11	Unmodified	_VNIDLVIEKLV_					0	0	0			REV__tr|A0A7D6ZT99|A0A7D6ZT99_9CLOTRibosomematurationfactorRimMOS=ClostridiumintestinaleOX=36845GN=rimMPE=3SV=1	REV__tr|A0A7D6ZT99|A0A7D6ZT99_9CLOTRibosomematurationfactorRimMOS=ClostridiumintestinaleOX=36845GN=rimMPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	627.8851928710938	2	627.887021	1253.75949	-6.1904	-0.0038869	3.1797	0.0019965	-3.0107	-0.0018904	627.888871662782	159.72	1.1788	158.11	157.75	158.93	-1.6101					65	26	3	0	0	0	0.72491	1	15770	15770		16.717	1.0756	1	136730	+		61418	32203	50679	50726	67287	67287					0.1427595846830627
VNIEPLPPVVT	11	Unmodified	_VNIEPLPPVVT_					0	0	0		IGSF21|p.A38T|1|0.48|ENSG00000117154|chr1:18227939-18227939|G/A|missense_variant	IGSF21|p.A38T|1|0.48|ENSG00000117154|chr1:18227939-18227939|G/A|missense_variant	IGSF21|p.A38T|1|0.48|ENSG00000117154|chr1:18227939-18227939|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3431396484375	2	589.344989	1176.67542	-5.1334	-0.0030254	1.6192	0.00095427	-3.5142	-0.0020711	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.69735	1	12552	12552		30.569	4.9948	1	589610			61419	14501	50680	50727	67288	67288					0.09415427371436635
VNIEPLPPVVT	11	Unmodified	_VNIEPLPPVVT_					0	0	0		IGSF21|p.A38T|1|0.48|ENSG00000117154|chr1:18227939-18227939|G/A|missense_variant	IGSF21|p.A38T|1|0.48|ENSG00000117154|chr1:18227939-18227939|G/A|missense_variant	IGSF21|p.A38T|1|0.48|ENSG00000117154|chr1:18227939-18227939|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.341796875	2	589.344989	1176.67542	-2.1868	-0.0012888	-1.3084	-0.00077111	-3.4952	-0.0020599	589.3441619466173	148.26	4.549	146.82	145.53	150.08	-1.435					304	95	6	0	0	0	0.68021	1	14565	14565		36.447	4.9169	1	385010			61420	14501	50680	50727	67289	67289					0.09415427371436635
VNIGIDALL	9	Unmodified	_VNIGIDALL_					0	0	0		ENSG00000118507|ENST00000431975|AKAP7;ENST00000543815.5_1_6:131486241-131540820:+|nuORF	ENSG00000118507|ENST00000431975|AKAP7	ENSG00000118507|ENST00000431975|AKAP7	MULTI-SECPEP	OvCa9_classI_Rep2	2	463.7979736328125	2	464.279118	926.543683	0.43241	0.00020076	1.4622	0.00067885	1.8946	0.00087961	464.27953323695965	71.03	0.68207	68.468	68.279	68.961	-2.5619					19	12	2	0	0	0	0.027441	1	5711	5711		45.952	0	1	14946			61421	3311	50681	50728	67290	67290					0.07747242074310634
VNIILGRHFE	10	Unmodified	_VNIILGRHFE_					0	0	0		ENST00000399501.2_10:47595144-47595348:+|nuORF	ENST00000399501.2_10:47595144-47595348:+|nuORF	ENST00000399501.2_10:47595144-47595348:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	599.364013671875	2	599.340572	1196.66659	0.27091	0.00016237	-1.4297	-0.00085688	-1.1588	-0.00069451	599.339566183479	126.31	0.98541	126.08	125.8	126.79	-0.23589					42	19	3	0	0	0	0.027198	1	12304	12304		26.693	2.4902	1	76411			61422	11392	50682	50729	67291	67291					0.07612498525622868
VNIILILKIL	10	Unmodified	_VNIILILKIL_					0	0	0			REV__tr|A0A7D7A374|A0A7D7A374_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22615PE=4SV=1	REV__tr|A0A7D7A374|A0A7D7A374_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22615PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	576.353271484375	2	576.409935	1150.80532	-0.46104	-0.00026575	3.2855	0.0018938	2.8244	0.001628	576.9132443072145	72.003	0.2441	69.4	69.18	69.424	-2.6023					6	4	2	0	0	0	0.026915	1	3384	3384		27.882	8.7787	1	22283	+		61423	32571	50683	50730	67292	67292					0.23594648441235222
VNIKDYDG	8	Unmodified	_VNIKDYDG_					0	0	0		ENST00000551191.1_1_12:80222078-80226230:-|nuORF;nc|ENSG00000058272|O14974-5|PPP1R12A;nc|ENSG00000058272|O14974-4|PPP1R12A;nc|ENSG00000058272|O14974-3|PPP1R12A;nc|ENSG00000058272|O14974-2|PPP1R12A;ENSG00000058272|ENST00000450142|PPP1R12A	ENST00000551191.1_1_12:80222078-80226230:-|nuORF;nc|ENSG00000058272|O14974-5|PPP1R12A	nc|ENSG00000058272|O14974-5|PPP1R12A	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.2271423339844	2	462.227082	922.439611	0.30189	0.00013954	-1.9794	-0.00091493	-1.6775	-0.00077539	462.2261682280489	140.61	1.0811	139.11	138.81	139.89	-1.4952					45	20	3	0	0	0	0.73205	1	13713	13713		35.618	0	1	115030			61424	13596;1243	50684	50731	67293	67293					-0.02471084753199193
VNILMCFL	8	Carbamidomethyl (C),Oxidation (M)	_VNILM(Oxidation (M))C(Carbamidomethyl (C))FL_	VNILMC(1)FL	VNILM(1)CFL	VNILMC(69)FL	VNILM(69)CFL	0	1	1		nc|ENSG00000140471|Q8NG48-3|LINS1;ENST00000559149.5_1_15:101113500-101121059:-|nuORF;nc|ENSG00000140471|Q8NG48-2|LINS1;ENSG00000140471|ENST00000314742|LINS1	nc|ENSG00000140471|Q8NG48-3|LINS1	nc|ENSG00000140471|Q8NG48-3|LINS1	MSMS	OvCa99_classI_Rep5	1	513.2618408203125	2	513.261556	1024.50856	NaN	NaN	NaN	NaN	NaN	NaN	NaN	125.08	1	125.08	124.58	125.58	0								0	0	0	0.30129	1	14446	14446		69.093	23.141	1				61425	4845	50685	50732	67294	67294	48	156			-0.0027146004947553593
VNILYQALSI	10	Unmodified	_VNILYQALSI_					0	0	0			REV__ENST00000547048.5_1_12:53862529-53873223:+|nuORF	REV__ENST00000547048.5_1_12:53862529-53873223:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3297729492188	2	567.331882	1132.64921	-3.474	-0.0019709	-0.21845	-0.00012393	-3.6925	-0.0020949	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.70152	1	12043	12043		30.318	1.1477	1	458690	+		61426	22891	50686	50733	67295	67295					0.0881915819995811
VNINHESV	8	Unmodified	_VNINHESV_					0	0	0			REV__tr|A0A7D6VSE0|A0A7D6VSE0_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15845PE=4SV=1	REV__tr|A0A7D6VSE0|A0A7D6VSE0_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15845PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	456.236328125	2	456.232699	910.450845	-0.31834	-0.00014524	-0.26046	-0.00011883	-0.5788	-0.00026407	456.23252540021565	42.539	0.68423	42.539	42.329	43.014	0					35	15	3	0	0	0	0.60331	1	2738	2738		63.306	5.495	1	761100	+		61427	31493	50687	50734	67296	67296					-0.007962626590369837
VNINWIDMI	9	Unmodified	_VNINWIDMI_					0	0	0		tr|A0A7D7ADP1|A0A7D7ADP1_9CLOTOFAfamilyMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23610PE=4SV=1	tr|A0A7D7ADP1|A0A7D7ADP1_9CLOTOFAfamilyMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23610PE=4SV=1	tr|A0A7D7ADP1|A0A7D7ADP1_9CLOTOFAfamilyMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23610PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.3258666992188	2	559.289159	1116.56377	0.36697	0.00020524	1.618	0.00090495	1.985	0.0011102	559.2899134414889	60.555	0.92239	60.555	60.277	61.2	0					38	21	3	0	0	0	0.027462	1	5296	5296		16.473	0.83134	1	854450			61428	36241	50688	50735	67297	67297					0.010146697426307583
VNINWIDMI	9	Unmodified	_VNINWIDMI_					0	0	0		tr|A0A7D7ADP1|A0A7D7ADP1_9CLOTOFAfamilyMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23610PE=4SV=1	tr|A0A7D7ADP1|A0A7D7ADP1_9CLOTOFAfamilyMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23610PE=4SV=1	tr|A0A7D7ADP1|A0A7D7ADP1_9CLOTOFAfamilyMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23610PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	559.289159	1116.56377	-1.4779	-0.00082655	4.9182	0.0027507	3.4404	0.0019242	559.7929511099758	62.959	0.31591	60.215	60.004	60.32	-2.7444	-0.059663	0.0028968	NaN	16.473	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	30014			61429	36241	50688	50735							0.010146697426307583
VNINWIDMI	9	Unmodified	_VNINWIDMI_					0	0	0		tr|A0A7D7ADP1|A0A7D7ADP1_9CLOTOFAfamilyMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23610PE=4SV=1	tr|A0A7D7ADP1|A0A7D7ADP1_9CLOTOFAfamilyMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23610PE=4SV=1	tr|A0A7D7ADP1|A0A7D7ADP1_9CLOTOFAfamilyMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23610PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	559.289159	1116.56377	0.57558	0.00032192	2.7928	0.001562	3.3684	0.0018839	559.2910446098183	63.528	0.67333	60.053	59.964	60.637	-3.475	-0.22098	0.00051942	NaN	16.473	23	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218790			61430	36241	50688	50735							0.010146697426307583
VNISASFRRK	10	Unmodified	_VNISASFRRK_					0	0	0		ENST00000503240.5_1_5:148743537-148748214:+|nuORF;ENST00000505669.5_1_5:148737686-148748214:+|nuORF;ENSG00000145882|ENST00000274569|PCYOX1L	ENST00000503240.5_1_5:148743537-148748214:+|nuORF	ENST00000503240.5_1_5:148743537-148748214:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3419799804688	2	589.343646	1176.67274	-5.1334	-0.0030254	3.8974	0.0022969	-1.236	-0.00072842	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.75313	1	12452	12452		24.519	0.99649	1	589610			61431	5251	50689	50736	67298	67298					0.09147016757128767
VNISKRIN	8	Unmodified	_VNISKRIN_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|35|1|sense;REV__nc|ENSG999|O00370|L1_ORF2	REV__nc|ENSG999|O00370|L1_ORF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.2875061035156	2	472.287808	942.561064	-2.429	-0.0011472	2.5145	0.0011876	0.085513	4.0387E-05	472.2888822731472	151.46	1.6275	150.03	149.41	151.04	-1.4344					87	36	4	0	0	0	0.74992	1	15005	15005		26.693	2.4902	1	477430	+		61432	29238;28487	50690	50737	67299	67299					0.0874858239999412
VNKILKTYTQV	11	Unmodified	_VNKILKTYTQV_					0	0	0		tr|A0A553SNV5|A0A553SNV5_NIACItRNA-2-methylthio-N(6)-dimethylallyladenosinesynthaseOS=NialliacirculansOX=1397GN=miaBPE=3SV=1	tr|A0A553SNV5|A0A553SNV5_NIACItRNA-2-methylthio-N(6)-dimethylallyladenosinesynthaseOS=NialliacirculansOX=1397GN=miaBPE=3SV=1	tr|A0A553SNV5|A0A553SNV5_NIACItRNA-2-methylthio-N(6)-dimethylallyladenosinesynthaseOS=NialliacirculansOX=1397GN=miaBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	436.2603759765625	3	436.262489	1305.76564	0.012007	5.2382E-06	-2.4715	-0.0010782	-2.4594	-0.001073	436.2615773396781	64.106	2.7222	61.381	60.915	63.637	-2.7245					177	52	5	0	0	0	0.60035	1	4906	4906		44.639	1.2209	1	5858100			61433	33967	50691	50738	67300	67300					0.12498476699829553
VNKKFGNLV	9	Unmodified	_VNKKFGNLV_					0	0	0		ENSG00000129317|ENST00000344862|PUS7L	ENSG00000129317|ENST00000344862|PUS7L	ENSG00000129317|ENST00000344862|PUS7L	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.25726318359375	2	509.805834	1017.59712	2.5285	0.0012891	0.26017	0.00013264	2.7887	0.0014217	509.8060878961875	91.619	0.49831	91.619	91.296	91.794	0					15	10	2	0	0	0	0.027462	1	9869	9869		29.15	0	1	616820			61434	3928	50692	50739	67301	67301					0.08902039576855714
VNKLHSLLL	9	Unmodified	_VNKLHSLLL_					0	0	0		tr|A0A553SU43|A0A553SU43_NIACIFour-carbonacidsugarkinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_06260PE=3SV=1	tr|A0A553SU43|A0A553SU43_NIACIFour-carbonacidsugarkinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_06260PE=3SV=1	tr|A0A553SU43|A0A553SU43_NIACIFour-carbonacidsugarkinasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_06260PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	518.828125	2	518.829309	1035.64407	1.7024	0.00088324	-2.0698	-0.0010739	-0.36745	-0.00019064	518.8281964515016	122.5	2.5536	121.47	120.64	123.19	-1.0286					133	48	4	0	0	0	0.48324	1	9494	9494		44.117	0	1	994930			61435	34568	50693	50740	67302	67302					0.1276689912801885
VNKRESLI	8	Unmodified	_VNKRESLI_					0	0	0			REV__ENSG00000188906|ENST00000298910|LRRK2	REV__ENSG00000188906|ENST00000298910|LRRK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.2724609375	2	479.787641	957.56073	-0.97279	-0.00046673	0.68462	0.00032847	-0.28817	-0.00013826	479.7872322722665	69.862	0.37727	69.862	69.712	70.089	0					10	8	2	0	0	0	0.028476	1	6680	6680		30.504	0	1	186830	+		61436	22748	50694	50741	67303	67303					0.08025162680155518
VNKTLKATL	9	Unmodified	_VNKTLKATL_					0	0	0		nc|ENSG00000089820|P98171-2|ARHGAP4;TMX2-ARHGAP4|1|fusion;ENST00000404127.6_1_X:153173185-153186849:-|nuORF;ENSG00000089820|ENST00000350060|ARHGAP4;ENST00000494302.5_1_X:153178504-153191656:-|nuORF;ENST00000470209.5_1_X:153178504-153191656:-|nuORF	nc|ENSG00000089820|P98171-2|ARHGAP4	nc|ENSG00000089820|P98171-2|ARHGAP4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.7882995605469	2	494.313492	986.612431	-0.01916	-9.4711E-06	-0.93545	-0.00046241	-0.95461	-0.00047188	494.3128117900236	98.63	1.1353	96.251	95.971	97.106	-2.3786					36	21	2	0	0	0	0.027462	1	8740	8740		25.574	1.0549	1	76643			61437	14914	50695	50742	67304	67304					0.11858906374038725
VNKVGVIAIVN	11	Unmodified	_VNKVGVIAIVN_					0	0	0			REV__tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	REV__tr|A0A7D6W144|A0A7D6W144_9CLOTSigma54-interactingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_01820PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.3548583984375	2	563.353148	1124.69174	0.72344	0.00040755	-1.5701	-0.00088453	-0.84668	-0.00047698	563.3523799001858	117.47	3.3994	116.13	115.53	118.93	-1.3452					169	64	5	0	0	0	0.67529	1	11082	11082		37.812	0.65241	1	2980000	+		61438	31876	50696	50743	67305	67305					0.13438553328182934
VNLDKIWRSK	10	Unmodified	_VNLDKIWRSK_					0	0	0			REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|111|2|sense	REV__L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|111|2|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	629.8478393554688	2	629.866954	1257.71936	0.51075	0.00032171	1.1097	0.00069896	1.6204	0.0010207	629.8674949562006	91.172	0.31892	89.937	89.742	90.061	-1.2355					9	5	2	0	0	0	0.026867	1	8087	8087		42.864	3.6114	1	8255.8	+		61439	28544	50697	50744	67306	67306					0.10080456588411835
VNLFAPIK	8	Unmodified	_VNLFAPIK_					0	0	0			REV__ENSG00000138430|ENST00000284719|OLA1	REV__ENSG00000138430|ENST00000284719|OLA1	MULTI-MSMS	OvCa9_classI_Rep2	2	451.2786560058594	2	451.278921	900.543289	2.3933	0.00108	-2.6216	-0.0011831	-0.22834	-0.00010304	451.277592402024	110.6	2.0227	110.43	110.06	112.08	-0.17237					101	40	4	0	0	0	0.57878	1	10419	10419		68.485	2.6815	1	1089100	+		61440	19539	50698	50745	67307	67307					0.08903867145124877
VNLFTPMVQPL	11	Unmodified	_VNLFTPMVQPL_					0	0	0			REV__ENSG00000198793|ENST00000361445|MTOR	REV__ENSG00000198793|ENST00000361445|MTOR	MULTI-MSMS	OvCa9_classI_Rep2	2	629.8478393554688	2	629.846842	1257.67913	0.41848	0.00026358	3.115	0.001962	3.5335	0.0022256	629.8484322050896	91.238	2.6459	90.003	89.341	91.986	-1.2355					108	50	4	0	0	0	0.29709	1	8087	8087		42.864	0	1	840130	+		61441	23062	50699	50746	67308	67308					0.06059773873630547
VNLKNVNPGKR	11	Unmodified	_VNLKNVNPGKR_					0	0	0		ENSG00000145794|ENST00000503335|MEGF10;ENST00000515622.1_1_5:126783361-126801299:+|nuORF	ENSG00000145794|ENST00000503335|MEGF10	ENSG00000145794|ENST00000503335|MEGF10	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8677368164062	2	619.870028	1237.7255	-3.6059	-0.0022352	2.5915	0.0016064	-1.0145	-0.00062885	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.71191	1	12965	12965		25.574	0	1	664560			61442	5245	50700	50747	67309	67309					0.11614974819917734
VNLLHIESR	9	Unmodified	_VNLLHIESR_					0	0	0		ENSG00000129167|ENST00000682019|TPH1;nc|ENSG00000129167|P17752-2|TPH1	ENSG00000129167|ENST00000682019|TPH1	ENSG00000129167|ENST00000682019|TPH1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2939453125	2	540.811648	1079.60874	2.3031	0.0012455	-0.61245	-0.00033122	1.6906	0.0009143	541.31224923483	98.772	0.68086	98.772	98.596	99.276	0					26	16	3	0	0	0	0.027462	1	10954	10954		31.53	0	1	953530			61443	3923	50701	50748	67310	67310					0.07212236600184951
VNLLTTIK	8	Unmodified	_VNLLTTIK_					0	0	0			REV__tr|A0A553SG00|A0A553SG00_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09845PE=4SV=1	REV__tr|A0A553SG00|A0A553SG00_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09845PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	451.27825927734375	2	451.289485	900.564418	1.6286	0.00073497	-1.6763	-0.00075648	-0.047671	-2.1513E-05	451.2885916892163	111.69	0.49461	110.59	110.4	110.89	-1.1038					11	9	2	0	0	0	0.028476	1	8116	8116		53.351	0	1	12370	+		61444	29641	50702	50749	67311	67311					0.11015832453983876
VNLMKNEEVLV	11	Unmodified	_VNLMKNEEVLV_					0	0	0		ENSG00000110888|ENST00000695402|CAPRIN2;nc|ENSG00000110888|Q6IMN6-2|CAPRIN2;nc|ENSG00000110888|Q6IMN6-9|CAPRIN2;nc|ENSG00000110888|Q6IMN6|CAPRIN2;ENST00000537553.5_1_12:30862838-30863444:-|nuORF;ENST00000433722.6_1_12:30862838-30864693:-|nuORF;nc|ENSG00000110888|Q6IMN6-4|CAPRIN2;ENST00000454014.6_1_12:30862838-30884436:-|nuORF;ENST00000548676.5_1_12:30862838-30884436:-|nuORF	ENSG00000110888|ENST00000695402|CAPRIN2	ENSG00000110888|ENST00000695402|CAPRIN2	MULTI-MSMS	OvCa9_classI_Rep3	3	644.3482055664062	2	644.352488	1286.69042	-6.1065	-0.0039348	1.9091	0.0012301	-4.1974	-0.0027046	644.3535517231257	156.22	1.1461	155.15	154.82	155.96	-1.073					70	25	4	0	0	0	0.7046	1	13471	13471		28.081	0	1	162170			61445	2801	50703	50750	67312	67312					0.05854551177094436
VNLSNPPAPPK	11	Unmodified	_VNLSNPPAPPK_					0	0	0			REV__ENSG00000142677|ENST00000270800|IL22RA1	REV__ENSG00000142677|ENST00000270800|IL22RA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.302490234375	2	567.319306	1132.62406	2.1302	0.0012085	-2.0602	-0.0011688	0.070023	3.9725E-05	567.3179890742217	96.776	0.4245	96.776	96.584	97.008	0					15	9	3	0	0	0	0.025457	1	10590	10590		22.58	4.3176	1	140670	+		61446	19802	50704	50751	67313	67313					0.06305103397357925
VNLTKIKFS	9	Unmodified	_VNLTKIKFS_					0	0	0			REV__ENST00000609975.1_1_2:96191991-96192402:-|nuORF	REV__ENST00000609975.1_1_2:96191991-96192402:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	525.8062744140625	2	525.321317	1048.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.208	1	18.869	18.369	19.369	-1.3386								0	0	0	0.18141	1	24	24		32.812	8.2932	1		+		61447	28103	50705	50752	67314	67314					0.1057119289109778
VNLVSTGETLM	11	Unmodified	_VNLVSTGETLM_					0	0	0			REV__ENST00000394853.8_1_4:102020854-102030139:-|nuORF	REV__ENST00000394853.8_1_4:102020854-102030139:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	581.3257446289062	2	582.302464	1162.59037	-0.95931	-0.00055861	-2.4466	-0.0014246	-3.4059	-0.0019833	582.3006296102786	101.9	0.62451	99.701	99.471	100.1	-2.1994					16	11	2	0	0	0	0.02557	1	9137	9137		24.519	0	1	20391	+		61448	25304	50706	50753	67315	67315					0.015583138433157728
VNMDYPEV	8	Unmodified	_VNMDYPEV_					0	0	0			REV__tr|A0A7D6ZGH3|A0A7D6ZGH3_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_18625PE=4SV=1	REV__tr|A0A7D6ZGH3|A0A7D6ZGH3_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_18625PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.7599792480469	2	483.715493	965.416433	1.8816	0.00091018	1.5134	0.00073203	3.395	0.0016422	483.716106815505	77.609	0.75263	77.609	77.381	78.134	0					31	17	2	0	0	0	0.028476	1	7867	7867		25.45	0	1	901990	+		61449	31999	50707	50754	67316	67316					-0.06765846862163016
VNMEEPKPK	9	Unmodified	_VNMEEPKPK_					0	0	0			REV__CPD-MYL4|1|fusion	REV__CPD-MYL4|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.3485107421875	2	536.278792	1070.54303	1.0227	0.00054848	1.1642	0.00062436	2.187	0.0011728	536.2791960267131	132.63	0.1918	132.63	132.46	132.65	0					5	3	2	0	0	0	0.027462	1	15401	15401		14.865	0	1	34605	+		61450	16230	50708	50755	67317	67317					0.010580793629742402
VNNLLVIFN	9	Unmodified	_VNNLLVIFN_					0	0	0			REV__ENSG00000257743|ENST00000477922|MGAM2	REV__ENSG00000257743|ENST00000477922|MGAM2	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3029174804688	2	523.305667	1044.59678	-0.69596	-0.0003642	-3.2951	-0.0017244	-3.9911	-0.0020886	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.70177	1	13941	13941		17.365	0.89182	1	130240	+		61451	23548	50709	50756	67318	67318					0.0762661985700106
VNNLNDNVI	9	Unmodified	_VNNLNDNVI_					0	0	0			REV__ENST00000404284.6_1_22:35717823-35727385:+|nuORF	REV__ENST00000404284.6_1_22:35717823-35727385:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.76324462890625	2	507.764363	1013.51417	-0.75433	-0.00038302	-1.6017	-0.00081327	-2.356	-0.0011963	507.7634972764376	115.15	1.4832	115.03	114.8	116.28	-0.11777					77	29	3	0	0	0	0.48324	1	11003	11003		44.117	0	1	179880	+		61452	25432	50710	50757	67319	67319					0.007956780581821477
VNNNPGSIT	9	Unmodified	_VNNNPGSIT_					0	0	0		nc|ENSG00000040341|Q9NUL3-5|STAU2;ENST00000524113.5_1_8:74585313-74650536:-|nuORF;STAU2|p.P96Nfs*29|1|0.3|ENSG00000040341|chr8:73673231-73673232|GA/-|frameshift_variant;ENST00000522962.5_1_8:74566130-74621380:-|nuORF;STAU2|p.K174Tfs*9|1|0.05|ENSG00000040341|chr8:73617341-73617342|-/G|frameshift_variant;nc|ENSG00000040341|Q9NUL3-8|STAU2;nc|ENSG00000040341|Q9NUL3-3|STAU2;nc|ENSG00000040341|Q9NUL3-2|STAU2;ENSG00000040341|ENST00000524300|STAU2	nc|ENSG00000040341|Q9NUL3-5|STAU2	nc|ENSG00000040341|Q9NUL3-5|STAU2	MULTI-MSMS	OvCa9_classI_Rep4_	4	458.23187255859375	2	458.230156	914.445759	0.15484	7.0953E-05	4.1877	0.0019189	4.3426	0.0019899	458.23194107413076	112.48	1.2522	110.97	110.69	111.94	-1.5111					65	24	4	0	0	0	0.33652	1	10414	10414		58.782	7.4465	1	402800			61453	1111	50711	50758	67320	67320					-0.0148856652166387
VNNNTMLPSP	10	Unmodified	_VNNNTMLPSP_					0	0	0			REV__ENSG00000168412|ENST00000307161|MTNR1A	REV__ENSG00000168412|ENST00000307161|MTNR1A	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.226806640625	2	543.766049	1085.51754	0.057762	3.1409E-05	-0.68493	-0.00037244	-0.62717	-0.00034103	543.7658117538824	57.273	0.30023	57.273	57.138	57.438	0					9	6	2	0	0	0	0.026994	1	4796	4796		8.6937	0	1	189880	+		61454	21373	50712	50759	67321	67321					-0.021793951594645478
VNNQYVTWWLH	11	Unmodified	_VNNQYVTWWLH_					0	0	0			REV__ENST00000381161.5_1_X:2748138-2799251:+|nuORF	REV__ENST00000381161.5_1_X:2748138-2799251:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.2967529296875	3	487.242088	1458.70443	0.60323	0.00029392	0.28932	0.00014097	0.89254	0.00043489	487.57539464681173	66.552	1.241	63.857	63.17	64.411	-2.6958					44	24	3	0	0	0	0.026221	1	5226	5226		6.001	0	1	59445	+		61455	16719	50713	50760	67322	67322					-0.006570352795961298
VNNRLIAQGE	10	Unmodified	_VNNRLIAQGE_					0	0	0		tr|A0A553SNY6|A0A553SNY6_NIACIFlagellarmotorswitchphosphataseFliYOS=NialliacirculansOX=1397GN=fliYPE=3SV=1	tr|A0A553SNY6|A0A553SNY6_NIACIFlagellarmotorswitchphosphataseFliYOS=NialliacirculansOX=1397GN=fliYPE=3SV=1	tr|A0A553SNY6|A0A553SNY6_NIACIFlagellarmotorswitchphosphataseFliYOS=NialliacirculansOX=1397GN=fliYPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	557.3196411132812	2	557.304187	1112.59382	0.50103	0.00027923	0.31091	0.00017327	0.81193	0.00045249	557.3040264721499	58.818	0.9991	55.426	55.15	56.149	-3.392					26	19	2	0	0	0	0.026931	1	3923	3923		37.812	0	1	95981			61456	33981	50714	50761	67323	67323					0.04202744732174324
VNNSEHKKME	10	Unmodified	_VNNSEHKKME_					0	0	0			REV__ENSG00000222038|ENST00000409602|POTEJ	REV__ENSG00000222038|ENST00000409602|POTEJ	MULTI-MSMS	OvCa9_classI_Rep3	3	405.86724853515625	3	405.8644	1214.57137	3.0032	0.0012189	3.3306	0.0013518	6.3337	0.0025706	405.8656502294352	58.999	2.532	55.873	55.114	57.646	-3.1264					157	70	3	0	0	0	0.73378	1	1948	1948		19.263	5.7547	1	158560	+		61457	22699	50715	50762	67324	67324					-0.027332227277156562
VNPFTMQED	9	Unmodified	_VNPFTMQED_					0	0	0		ENSG00000127743|ENST00000261796|IL17B	ENSG00000127743|ENST00000261796|IL17B	ENSG00000127743|ENST00000261796|IL17B	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2939453125	2	540.736957	1079.45936	2.7147	0.0014679	3.0023	0.0016235	5.717	0.0030914	540.738238359358	99.297	0.37337	99.297	99.115	99.488	0					13	8	2	0	0	0	0.027462	1	10954	10954		27.882	0	1	365900			61458	3845	50716	50763	67325	67325					-0.0771907680473305
VNPQTFHF	8	Unmodified	_VNPQTFHF_					0	0	0			REV__ENST00000405460.7_2_5:90398078-90449045:+|nuORF	REV__ENST00000405460.7_2_5:90398078-90449045:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.27008056640625	2	495.245609	988.476666	1.1872	0.00058795	-3.0895	-0.0015301	-1.9024	-0.00094214	495.2441232470068	132.96	0.60349	132.96	132.75	133.35	0					15	12	2	0	0	0	0.028476	1	15482	15482		33.516	17.042	1	64870	+		61459	25439	50717	50764	67326	67326					-0.01803368416756257
VNPRDRRVVI	10	Unmodified	_VNPRDRRVVI_					0	0	0		ENSG00000131966|ENST00000254286|ACTR10;ENST00000556748.5_1_14:58666901-58681958:+|nuORF;ENST00000556312.5_1_14:58666935-58675849:+|nuORF	ENSG00000131966|ENST00000254286|ACTR10	ENSG00000131966|ENST00000254286|ACTR10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	611.9104614257812	2	612.370195	1222.72584	0.91216	0.00055858	3.0599	0.0018738	3.9721	0.0024324	612.8726868430085	111.16	0.68384	109.56	109.07	109.75	-1.6011					15	12	2	0	0	0	0.027147	1	10211	10211		29.15	0	1	12527			61460	4102	50718	50765	67327	67327					0.12338394539801811
VNPVLYPL	8	Unmodified	_VNPVLYPL_					0	0	0		nc|ENSG00000101180|Q9Y5N1-5|HRH3;nc|ENSG00000101180|Q9Y5N1-6|HRH3;nc|ENSG00000101180|Q9Y5N1-3|HRH3;nc|ENSG00000101180|Q9Y5N1-7|HRH3;nc|ENSG00000101180|Q9Y5N1-4|HRH3;ENSG00000101180|ENST00000340177|HRH3;nc|ENSG00000101180|Q9Y5N1-2|HRH3	nc|ENSG00000101180|Q9Y5N1-5|HRH3	nc|ENSG00000101180|Q9Y5N1-5|HRH3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	457.7796936035156	2	457.770929	913.527304	-1.0265	-0.00046988	-3.5678	-0.0016333	-4.5943	-0.0021031	457.76917460979774	50.869	0.86617	47.696	47.308	48.174	-3.1734					26	16	2	0	0	0	0.028476	1	2998	2998		49.211	6.7363	1	40477			61461	2145	50719	50766	67328	67328					0.06708160908226546
VNQKLVAAY	9	Unmodified	_VNQKLVAAY_					0	0	0		ENSG00000101928|ENST00000370783|MOSPD1;nc|ENSG00000101928|Q9UJG1-3|MOSPD1	ENSG00000101928|ENST00000370783|MOSPD1	ENSG00000101928|ENST00000370783|MOSPD1	MULTI-SECPEP	OvCa9_classI_Rep3	3	503.76513671875	2	503.290017	1004.56548	-1.3995	-0.00070434	1.9564	0.00098462	0.5569	0.00028028	503.2909611432339	93.819	0.71607	91.858	91.678	92.394	-1.9617					22	13	3	0	0	0	0.027462	1	6017	6017		31.955	4.0726	1	78312			61462	2205	50720	50767	67329	67329					0.06338046822895649
VNQTSQLLL	9	Unmodified	_VNQTSQLLL_					0	0	0			REV__ENSG00000102683|ENST00000218867|SGCG	REV__ENSG00000102683|ENST00000218867|SGCG	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.29364013671875	2	508.292756	1014.57096	-2.4345	-0.0012374	-1.2396	-0.00063008	-3.6741	-0.0018675	508.2900767766504	108.31	0.9006	106.59	106.17	107.07	-1.7256					39	17	3	0	0	0	0.44568	1	9906	9906		47.657	1.6851	1	77138	+		61463	17566	50721	50768	67330	67330					0.06425725614712974
VNQTSQLLL	9	Unmodified	_VNQTSQLLL_					0	0	0			REV__ENSG00000102683|ENST00000218867|SGCG	REV__ENSG00000102683|ENST00000218867|SGCG	MULTI-MATCH	OvCa9_classI_Rep3	3		2	508.292756	1014.57096	-0.07596	-3.861E-05	-4.0029	-0.0020347	-4.0789	-0.0020733	508.2894174368206	107.62	1.0662	106.35	105.71	106.78	-1.267	-0.11801	-0.0013318	NaN	47.657	46	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	127550	+		61464	17566	50721	50768							0.06425725614712974
VNQTSQLLL	9	Unmodified	_VNQTSQLLL_					0	0	0			REV__ENSG00000102683|ENST00000218867|SGCG	REV__ENSG00000102683|ENST00000218867|SGCG	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	508.292756	1014.57096	-2.4345	-0.0012374	-1.2396	-0.00063008	-3.6741	-0.0018675	508.2900767766504	108.31	0.9006	106.59	106.17	107.07	-1.7256	0.11801	0.0014773	NaN	47.657	39	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77138	+		61465	17566	50721	50768							0.06425725614712974
VNRDEFCVTCK	11	Unmodified	_VNRDEFCVTCK_					0	0	0			REV__ENSG00000164674|ENST00000611299|SYTL3	REV__ENSG00000164674|ENST00000611299|SYTL3	MULTI-SECPEP	OvCa99_classI_Rep5	1	437.8759460449219	3	438.537407	1312.59039	1.1198	0.00049108	2.3288	0.0010213	3.4486	0.0015123	438.87325826108673	64.936	0.36111	64.936	64.75	65.111	0					13	8	2	0	0	0	0.025988	1	5921	5921		20.315	0	1	196320	+		61466	21011	50722	50769	67331	67331					-0.05340009428346093
VNRGVHKNNL	10	Unmodified	_VNRGVHKNNL_					0	0	0			REV__nc|ENSG00000128159|Q96RT7-2|TUBGCP6;REV__ENST00000498611.5_1_22:50657979-50682900:-|nuORF;REV__TUBGCP6-PLXNB2|1|fusion	REV__TUBGCP6-PLXNB2|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.8519287109375	2	575.825621	1149.63669	0.29082	0.00016746	3.4938	0.0020118	3.7847	0.0021793	575.8276550007403	89.724	0.29807	87.149	87.05	87.348	-2.575					6	5	2	0	0	0	0.026956	1	7705	7705		19.997	0	1	12375	+		61467	32739;26798;18841	50723	50770	67332	67332					0.06785559580271183
VNRHYAKI	8	Unmodified	_VNRHYAKI_					0	0	0		nc|ENSG00000115085|P43403-3|ZAP70;ENSG00000115085|ENST00000264972|ZAP70;ENST00000495754.1_1_2:98351695-98354405:+|nuORF;nc|ENSG00000115085|P43403-2|ZAP70;ENST00000487283.5_1_2:98351482-98355958:+|nuORF	nc|ENSG00000115085|P43403-3|ZAP70	nc|ENSG00000115085|P43403-3|ZAP70	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.3084716796875	2	500.787976	999.561398	-0.3437	-0.00017212	3.2578	0.0016315	2.9141	0.0014594	500.78956258635816	56.194	0.98805	56.194	55.845	56.833	0					56	23	4	0	0	0	0.028476	1	4634	4634		47.916	12.297	1	1582400			61468	3060	50724	50771	67333	67333					0.06160002119838737
VNRQMGHY	8	Unmodified	_VNRQMGHY_					0	0	0			REV__ENST00000544662.1_1_12:132414461-132416977:+|nuORF	REV__ENST00000544662.1_1_12:132414461-132416977:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.29986572265625	2	502.740168	1003.46578	-0.18713	-9.4076E-05	-0.087152	-4.3815E-05	-0.27428	-0.00013789	502.74023114022685	115.55	0.59341	114.15	113.92	114.51	-1.3977					15	11	2	0	0	0	0.028476	1	10748	10748		20.482	0	1	18414	+		61469	21990	50725	50772	67334	67334					-0.035810940626902266
VNRRLLETE	9	Unmodified	_VNRRLLETE_					0	0	0			REV__ENSG00000214338|ENST00000525778|SOGA3	REV__ENSG00000214338|ENST00000525778|SOGA3	MULTI-SECPEP	OvCa9_classI_Rep2	2	565.799072265625	2	565.319837	1128.62512	-2.3567	-0.0013323	2.7507	0.001555	0.394	0.00022274	565.3209676838056	35.918	0.8955	33.208	32.85	33.745	-2.7097					26	17	2	0	0	0	0.027455	1	1492	1492		34.173	8.5985	1	35904	+		61470	23288	50726	50773	67335	67335					0.06595317766300468
VNRRLVVE	8	Unmodified	_VNRRLVVE_					0	0	0		ENSG00000186862|ENST00000619208|PDZD7;ENST00000474125.6_1_10:102781964-102783431:-|nuORF;nc|ENSG00000186862|Q9H5P4-2|PDZD7;nc|ENSG00000186862|Q9H5P4-1|PDZD7	ENSG00000186862|ENST00000619208|PDZD7	ENSG00000186862|ENST00000619208|PDZD7	MULTI-MSMS	OvCa9_classI_Rep2	2	492.7998352050781	2	492.801083	983.587613	-0.13395	-6.6009E-05	-0.63002	-0.00031047	-0.76397	-0.00037648	492.80080175302294	60.14	2.6551	57.369	56.62	59.275	-2.7702					118	50	3	0	0	0	0.7224	1	4456	4456		38.806	8.3025	1	2695700			61471	8367	50727	50774	67336	67336					0.09516271291317935
VNRSTRRL	8	Unmodified	_VNRSTRRL_					0	0	0		ENST00000470388.5_1_1:35944782-36019985:-|nuORF	ENST00000470388.5_1_1:35944782-36019985:-|nuORF	ENST00000470388.5_1_1:35944782-36019985:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.30535888671875	2	501.301781	1000.58901	-1.4524	-0.0007281	-1.7434	-0.00087396	-3.1958	-0.0016021	501.30032622144455	95.149	0.85084	92.681	92.36	93.211	-2.4685					25	16	2	0	0	0	0.028476	1	8380	8380		37.159	11.709	1	28096			61472	12365	50728	50775	67337	67337					0.08873905380085034
VNRTLGRNVPL	11	Unmodified	_VNRTLGRNVPL_					0	0	0		ENST00000433847.2_1_12:9067399-9086462:+|nuORF;ENSG00000111752|ENST00000544916|PHC1	ENST00000433847.2_1_12:9067399-9086462:+|nuORF	ENST00000433847.2_1_12:9067399-9086462:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8697509765625	2	619.870028	1237.7255	-3.8587	-0.0023919	2.9348	0.0018192	-0.92393	-0.00057272	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.69455	2	15229	15229;15405		31.53	2.3598	1	492670			61473	2850	50729	50776	67338;67339	67338					0.11614974819940471
VNRTPVQR	8	Unmodified	_VNRTPVQR_					0	0	0			REV__ENSG00000185915|ENST00000379499|KLHL34	REV__ENSG00000185915|ENST00000379499|KLHL34	MSMS	OvCa99_classI_Rep5	1	485.2841796875	2	485.283057	968.551562	NaN	NaN	NaN	NaN	NaN	NaN	NaN	75.652	1	75.652	75.152	76.152	0								0	0	0	0.30129	1	7544	7544		42.396	3.1433	1		+		61474	22543	50730	50777	67340	67340					0.06602814114467037
VNSEKLNDK	9	Unmodified	_VNSEKLNDK_					0	0	0			REV__tr|A0A7D7ADC5|A0A7D7ADC5_9CLOT1,4-dihydroxy-2-naphthoatepolyprenyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22445PE=4SV=1	REV__tr|A0A7D7ADC5|A0A7D7ADC5_9CLOT1,4-dihydroxy-2-naphthoatepolyprenyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22445PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.7841186523438	2	523.77747	1045.54039	1.6631	0.00087108	-1.0027	-0.00052518	0.66039	0.0003459	523.7768620296944	90.539	1.078	90.539	90.02	91.098	0					41	26	2	0	0	0	0.027457	1	9758	9758		47.96	17.642	1	534400	+		61475	32694	50731	50778	67341	67341					0.019439472296653548
VNSGLHQL	8	Unmodified	_VNSGLHQL_					0	0	0			REV__nc|ENSG00000197658|Q8N4F4-3|SLC22A24	REV__nc|ENSG00000197658|Q8N4F4-3|SLC22A24	MULTI-SECPEP	OvCa99_classI_Rep5	1	434.8824462890625	2	434.237784	866.461016	-0.71536	-0.00031064	0.72434	0.00031453	0.0089771	3.8982E-06	434.2379181657038	43.974	0.25676	43.974	43.823	44.08	0					9	5	2	0	0	0	0.028476	1	2953	2953		30.504	13.139	1	117540	+		61476	22942	50732	50779	67342	67342					0.022443450661853603
VNSSALPHKLR	11	Unmodified	_VNSSALPHKLR_					0	0	0		ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	ENSG00000165030|ENST00000297689|NFIL3	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3517456054688	2	611.356754	1220.69895	-2.3862	-0.0014588	1.1145	0.00068137	-1.2716	-0.00077742	611.3572929291362	147.43	3.7918	146.48	144.56	148.35	-0.9512					254	75	5	0	0	0	0.71789	1	12566	12566		23.523	0	1	250910			61477	6512	50733	50780	67343	67343					0.09743285928584555
VNTILPFVLL	10	Unmodified	_VNTILPFVLL_					0	0	0		tr|A0A553SUP6|A0A553SUP6_NIACIFattyaciddesaturaseOS=NialliacirculansOX=1397GN=CEQ21_04985PE=4SV=1	tr|A0A553SUP6|A0A553SUP6_NIACIFattyaciddesaturaseOS=NialliacirculansOX=1397GN=CEQ21_04985PE=4SV=1	tr|A0A553SUP6|A0A553SUP6_NIACIFattyaciddesaturaseOS=NialliacirculansOX=1397GN=CEQ21_04985PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	564.8580932617188	2	564.854993	1127.69543	1.0991	0.00062086	3.6711	0.0020736	4.7702	0.0026945	564.856820138611	152.24	0.69955	152.24	151.97	152.67	0					31	17	3	0	0	0	0.50999	1	17822	17822		52.937	6.9645	1	236530			61478	34629	50734	50781	67344	67344					0.13669223102033357
VNTNYGKIQ	9	Unmodified	_VNTNYGKIQ_					0	0	0		nc|ENSG00000165246|Q8NFZ3|NLGN4Y;ENSG00000165246|ENST00000684976|NLGN4Y;nc|ENSG00000165246|Q8NFZ3-4|NLGN4Y;ENST00000476359.1_1_Y:16733999-16863586:+|nuORF	nc|ENSG00000165246|Q8NFZ3|NLGN4Y	nc|ENSG00000165246|Q8NFZ3|NLGN4Y	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.3334350585938	2	518.774731	1035.53491	-0.94838	-0.000492	-0.39752	-0.00020622	-1.3459	-0.00069822	518.7745685028855	73.883	0.75784	70.652	70.337	71.095	-3.2308					23	15	2	0	0	0	0.027462	1	5733	5733		32.812	0	1	54178			61479	6540	50735	50782	67345	67345					0.018562684378593985
VNTVKVPV	8	Unmodified	_VNTVKVPV_					0	0	0			REV__chr9:130458589-130479716|163|311.8|0.0|16.41|+|2|ASS1,ASS1|1	REV__chr9:130458589-130479716|163|311.8|0.0|16.41|+|2|ASS1,ASS1|1	MULTI-MSMS	OvCa9_classI_Rep2	2	428.2685852050781	2	428.268553	854.522553	-1.0602	-0.00045404	1.3366	0.00057244	0.27646	0.0001184	428.2689736144851	56.503	1.4866	53.699	53.275	54.761	-2.804					91	29	4	0	0	0	0.61436	1	4014	4014		60.972	0	1	554390	+		61480	16120	50736	50783	67346	67346					0.0894727676546836
VNTYMHHR	8	Unmodified	_VNTYMHHR_					0	0	0			REV__DPEP3|p.L408Nfs*3|1|0.04|ENSG00000141096|chr16:67976176-67976177|-/TT|frameshift_variant	REV__DPEP3|p.L408Nfs*3|1|0.04|ENSG00000141096|chr16:67976176-67976177|-/TT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.3283081054688	2	529.253443	1056.49233	0.40263	0.00021309	-0.38917	-0.00020597	0.013462	7.1248E-06	529.253261974428	129.48	0.64302	128.36	128.14	128.78	-1.1121					19	12	2	0	0	0	0.028476	1	10219	10219		18.324	0	1	28168	+		61481	16337	50737	50784	67347	67347					-0.03365405171371094
VNTYQVPW	8	Unmodified	_VNTYQVPW_					0	0	0		ENST00000413432.2_1_2:242382773-242383022:+|nuORF	ENST00000413432.2_1_2:242382773-242383022:+|nuORF	ENST00000413432.2_1_2:242382773-242383022:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	503.7519836425781	2	503.753267	1005.49198	-0.47395	-0.00023875	-3.787	-0.0019077	-4.2609	-0.0021465	503.7512732081583	49.198	1.0492	49.198	48.807	49.856	0					70	23	5	0	0	0	0.48084	1	3637	3637		79.451	13.986	1	8950300			61482	11563	50738	50785	67348	67348					-0.01054501619569237
VNVALRAV	8	Unmodified	_VNVALRAV_					0	0	0			REV__nc|ENSG00000108506|Q9H0H0|INTS2	REV__nc|ENSG00000108506|Q9H0H0|INTS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	421.2662353515625	2	421.266345	840.518136	-1.2006	-0.00050579	0.72037	0.00030347	-0.48026	-0.00020232	421.26666345540275	40.83	2.0659	37.876	37.421	39.487	-2.9541					132	39	5	0	0	0	0.67745	1	1807	1807		47.916	3.3845	1	2205900	+		61483	17891	50739	50786	67349	67349					0.09149812342548103
VNVASTVGSY	10	Unmodified	_VNVASTVGSY_					0	0	0			REV__ENSG00000167676|ENST00000301286|PLIN4	REV__ENSG00000167676|ENST00000301286|PLIN4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.2936706542969	2	498.753464	995.492375	0.095182	4.7473E-05	-1.2749	-0.00063586	-1.1797	-0.00058839	498.75264403827305	64.682	0.67866	61.197	60.921	61.599	-3.4854					28	13	3	0	0	0	0.027028	1	4642	4642		24.519	0.31644	1	74805	+		61484	21299	50740	50787	67350	67350					-0.005551266903694341
VNVEAPDVN	9	Unmodified	_VNVEAPDVN_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant;AHNAK|p.P895Cfs*7|1|0.12|ENSG00000124942|chr11:62531725-62531735|CCACTTCTGGG/-|frameshift_variant;AHNAK|p.P767Cfs*7|1|0.15|ENSG00000124942|chr11:62532109-62532119|CCACTTCTGGG/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.737060546875	2	478.737814	955.461075	-0.95748	-0.00045838	0.66057	0.00031624	-0.29691	-0.00014214	478.7379337933485	118.44	1.4586	117.09	116.63	118.09	-1.3444					63	27	4	0	0	0	0.53483	1	11106	11106		39.253	3.6345	1	121010			61485	3687	50741	50788	67351	67351					-0.018436997244748454
VNVKAQNVLK	10	Unmodified	_VNVKAQNVLK_					0	0	0		tr|A0A7D6ZHD0|A0A7D6ZHD0_9CLOTGalactitol-1-phosphate5-dehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02430PE=3SV=1	tr|A0A7D6ZHD0|A0A7D6ZHD0_9CLOTGalactitol-1-phosphate5-dehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02430PE=3SV=1	tr|A0A7D6ZHD0|A0A7D6ZHD0_9CLOTGalactitol-1-phosphate5-dehydrogenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02430PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.822265625	2	556.842948	1111.67134	1.3425	0.00074758	3.8964	0.0021697	5.2389	0.0029173	556.8450841479066	155.95	1.0663	155.95	155.58	156.65	0					33	20	2	0	0	0	0.026849	1	18307	18307		32.812	11.11	1	43817			61486	35571	50742	50789	67352	67352					0.11997382668369028
VNVKFSKPKIT	11	Unmodified	_VNVKFSKPKIT_					0	0	0			REV__ENSG00000138061|ENST00000610745|CYP1B1	REV__ENSG00000138061|ENST00000610745|CYP1B1	MULTI-MSMS	OvCa9_classI_Rep4_	4	420.92828369140625	3	420.927329	1259.76016	-1.1533	-0.00048544	1.0799	0.00045454	-0.073411	-3.0901E-05	420.92781623886106	70.392	1.7502	66.911	66.589	68.339	-3.4812					123	35	5	0	0	0	0.45478	1	5331	5331		57.149	4.0598	1	1320300	+		61487	19504	50743	50790	67353	67353					0.1406679790804901
VNVLLGIQAD	10	Unmodified	_VNVLLGIQAD_					0	0	0		ENST00000453159.5_1_21:37505075-37505291:-|nuORF	ENST00000453159.5_1_21:37505075-37505291:-|nuORF	ENST00000453159.5_1_21:37505075-37505291:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.3072509765625	2	521.300581	1040.58661	1.5694	0.00081812	3.1004	0.0016162	4.6697	0.0024343	521.8040185063466	78.265	0.44488	78.265	78.053	78.498	0					27	10	4	0	0	0	0.026915	1	7937	7937		9.7057	0	1	1373800			61488	12066	50744	50791	67354	67354					0.06794012131763338
VNVLPFMLLAG	11	Unmodified	_VNVLPFMLLAG_					0	0	0			REV__ENSG00000101276|ENST00000645534|SLC52A3	REV__ENSG00000101276|ENST00000645534|SLC52A3	MULTI-MSMS	OvCa99_classI_Rep5	1	587.33935546875	2	587.338652	1172.66275	-0.86789	-0.00050975	1.7725	0.0010411	0.90465	0.00053134	587.3397368574102	28.468	0.39837	28.468	28.34	28.739	0					15	7	3	0	0	0	0.68263	1	938	938		35.618	0.46626	1	165410	+		61489	17486	50745	50792	67355	67355					0.08332692707563183
VNVPGTSLSLP	11	Unmodified	_VNVPGTSLSLP_					0	0	0		tr|A0A553SJA5|A0A553SJA5_NIACIPyruvatekinaseOS=NialliacirculansOX=1397GN=pykPE=3SV=1	tr|A0A553SJA5|A0A553SJA5_NIACIPyruvatekinaseOS=NialliacirculansOX=1397GN=pykPE=3SV=1	tr|A0A553SJA5|A0A553SJA5_NIACIPyruvatekinaseOS=NialliacirculansOX=1397GN=pykPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.3544921875	2	542.305864	1082.59717	-0.10431	-5.6567E-05	-2.3616	-0.0012807	-2.4659	-0.0013373	542.3044653026915	22.311	0.51794	22.311	22.142	22.66	0					29	11	4	0	0	0	0.02605	1	219	219		30.318	3.6248	1	462350			61490	33483	50746	50793	67356	67356					0.05917994786182135
VNVSKLVP	8	Unmodified	_VNVSKLVP_					0	0	0		tr|A0A7D6VZ48|A0A7D6VZ48_9CLOTGlucosaminidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18685PE=4SV=1	tr|A0A7D6VZ48|A0A7D6VZ48_9CLOTGlucosaminidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18685PE=4SV=1	tr|A0A7D6VZ48|A0A7D6VZ48_9CLOTGlucosaminidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18685PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	428.2695617675781	2	428.268553	854.522553	-1.0602	-0.00045404	1.3366	0.00057244	0.27646	0.0001184	428.2689736144851	56.503	1.4866	53.699	53.275	54.761	-2.804					91	29	4	0	0	0	0.58851	3	4027	4000;4020;4027		66.429	9.7082	1	554390			61491	35349	50747	50794	67357;67358;67359	67359					0.0894727676546836
VNVSKLVP	8	Unmodified	_VNVSKLVP_					0	0	0		tr|A0A7D6VZ48|A0A7D6VZ48_9CLOTGlucosaminidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18685PE=4SV=1	tr|A0A7D6VZ48|A0A7D6VZ48_9CLOTGlucosaminidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18685PE=4SV=1	tr|A0A7D6VZ48|A0A7D6VZ48_9CLOTGlucosaminidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18685PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	428.2697448730469	2	428.268553	854.522553	0.62739	0.00026869	-0.80861	-0.0003463	-0.18122	-7.7609E-05	428.26814430976907	57.133	2.0733	53.788	53.324	55.397	-3.3449					106	40	4	0	0	0	0.33046	5	3677	3677;3710;3724;3735;3746		101.6	21.267	1	1846200			61492	35349	50747	50794	67360;67361;67362;67363;67364	67360					0.0894727676546836
VNVTHSIT	8	Unmodified	_VNVTHSIT_					0	0	0			REV__nc|ENSG00000108684|Q16515|ASIC2	REV__nc|ENSG00000108684|Q16515|ASIC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	435.76092529296875	2	435.737617	869.460681	1.2597	0.00054889	2.9673	0.001293	4.227	0.0018419	435.73917149973056	45.563	0.20924	45.563	45.373	45.582	0					5	4	2	0	0	0	0.028476	1	3162	3162		63.306	11.971	1	32964	+		61493	28789	50748	50795	67365	67365					0.020729253463287023
VNWLLAQK	8	Unmodified	_VNWLLAQK_					0	0	0		GIP|p.P123Ifs*16|1|0.12|ENSG00000159224|chr17:48960972-48960973|-/CCCACTCCGTGATA|frameshift_variant;ENSG00000159224|ENST00000357424|GIP	GIP|p.P123Ifs*16|1|0.12|ENSG00000159224|chr17:48960972-48960973|-/CCCACTCCGTGATA|frameshift_variant	GIP|p.P123Ifs*16|1|0.12|ENSG00000159224|chr17:48960972-48960973|-/CCCACTCCGTGATA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.8150329589844	2	486.287277	970.560001	0.081343	3.9556E-05	2.1633	0.001052	2.2447	0.0010916	486.2901424278836	57.387	0.81577	54.042	53.679	54.495	-3.3449					19	15	2	0	0	0	0.028476	1	3764	3764		33.516	17.042	1	11985			61494	5998	50749	50796	67366	67366					0.0735436803107632
VNYNCVILD	9	Unmodified	_VNYNCVILD_					0	0	0		tr|A0A7D6VS15|A0A7D6VS15_9CLOTAcetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03830PE=3SV=1	tr|A0A7D6VS15|A0A7D6VS15_9CLOTAcetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03830PE=3SV=1	tr|A0A7D6VS15|A0A7D6VS15_9CLOTAcetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03830PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.2800903320312	2	526.757692	1051.50083	2.0003	0.0010537	3.1615	0.0016654	5.1619	0.0027191	527.2595297627083	76.313	0.28124	76.313	76.199	76.48	0					12	6	2	0	0	0	0.027455	1	7645	7645		42.396	8.2236	1	132260			61495	34975	50750	50797	67367	67367					-0.022858960454186672
VNYNCVILD	9	Unmodified	_VNYNCVILD_					0	0	0		tr|A0A7D6VS15|A0A7D6VS15_9CLOTAcetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03830PE=3SV=1	tr|A0A7D6VS15|A0A7D6VS15_9CLOTAcetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03830PE=3SV=1	tr|A0A7D6VS15|A0A7D6VS15_9CLOTAcetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03830PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	526.757692	1051.50083	-0.43638	-0.00022986	4.4464	0.0023422	4.01	0.0021123	526.7598859932343	77.827	0.89234	76.038	75.623	76.515	-1.7894	-0.065906	-3.6722E-05	NaN	42.396	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25539			61496	34975	50750	50797							-0.022858960454186672
VNYNCVILD	9	Unmodified	_VNYNCVILD_					0	0	0		tr|A0A7D6VS15|A0A7D6VS15_9CLOTAcetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03830PE=3SV=1	tr|A0A7D6VS15|A0A7D6VS15_9CLOTAcetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03830PE=3SV=1	tr|A0A7D6VS15|A0A7D6VS15_9CLOTAcetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03830PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	526.757692	1051.50083	-1.0409	-0.00054832	4.9574	0.0026113	3.9165	0.002063	526.7602429788376	78.214	0.90714	75.862	75.546	76.453	-2.3527	-0.24211	0.00050166	NaN	42.396	30	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32886			61497	34975	50750	50797							-0.022858960454186672
VNYNCVILD	9	Unmodified	_VNYNCVILD_					0	0	0		tr|A0A7D6VS15|A0A7D6VS15_9CLOTAcetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03830PE=3SV=1	tr|A0A7D6VS15|A0A7D6VS15_9CLOTAcetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03830PE=3SV=1	tr|A0A7D6VS15|A0A7D6VS15_9CLOTAcetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03830PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	526.757692	1051.50083	-0.72605	-0.00038245	4.0486	0.0021326	3.3225	0.0017502	526.76005288668	78.954	0.571	76.203	75.991	76.562	-2.7514	0.098859	-0.00045579	NaN	42.396	21	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43097			61498	34975	50750	50797							-0.022858960454186672
VNYSLLDVV	9	Unmodified	_VNYSLLDVV_					0	0	0			REV__ENSG00000084674|ENST00000233242|APOB	REV__ENSG00000084674|ENST00000233242|APOB	MULTI-SECPEP	OvCa9_classI_Rep3	3	511.2696228027344	2	511.281857	1020.54916	-0.37782	-0.00019317	0.16024	8.1928E-05	-0.21758	-0.00011125	511.28153922889356	88.802	1.5359	86.671	86.315	87.851	-2.1309					48	30	3	0	0	0	0.027462	1	5396	5396		37.159	11.709	1	129720	+		61499	17124	50751	50798	67368	67368					0.03970920866152028
VPAAICFLSLR	11	Unmodified	_VPAAICFLSLR_					0	0	0			REV__ENSG00000063438|ENST00000684583|AHRR	REV__ENSG00000063438|ENST00000684583|AHRR	MULTI-SECPEP	OvCa9_classI_Rep2	2	596.3390502929688	2	595.341726	1188.6689	-1.5766	-0.00093864	4.1502	0.0024708	2.5736	0.0015322	595.3442091994688	54.587	0.44891	51.773	51.573	52.022	-2.8139					15	8	2	0	0	0	0.026089	1	3739	3739		29.17	12.697	1	13872	+		61500	16761	50752	50799	67369	67369					0.08211210939066405
VPAALPGSI	9	Unmodified	_VPAALPGSI_					0	0	0		ENST00000544021.5_1_12:6561434-6562655:+|nuORF	ENST00000544021.5_1_12:6561434-6562655:+|nuORF	ENST00000544021.5_1_12:6561434-6562655:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	412.746337890625	2	412.747453	823.480354	0.89602	0.00036983	-3.8761	-0.0015999	-2.9801	-0.00123	412.745727074971	134.3	1.3763	134.07	133.07	134.44	-0.22697					63	27	4	0	0	0	0.6959	1	13264	13264		19.36	0	1	259910			61501	13501	50753	50800	67370	67370					0.06155301357091503
VPAARSILAL	10	Unmodified	_VPAARSILAL_					0	0	0		ENSG00000101161|ENST00000266079|PRPF6;nc|ENSG00000101161|O94906-2|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	MULTI-MSMS	OvCa9_classI_Rep2	2	505.8213195800781	2	505.821484	1009.62842	-1.3674	-0.00069167	0.91332	0.00046198	-0.45411	-0.0002297	505.8218949665062	102.55	1.5294	101.86	101.59	103.12	-0.68459					74	30	4	0	0	0	0.49595	1	9442	9442		54.722	8.7501	1	446420			61502	2144	50754	50801	67371	67371					0.1239861261092301
VPAARSILAL	10	Unmodified	_VPAARSILAL_					0	0	0		ENSG00000101161|ENST00000266079|PRPF6;nc|ENSG00000101161|O94906-2|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	MULTI-MSMS	OvCa9_classI_Rep4_	4	505.8210754394531	2	505.821484	1009.62842	-0.84667	-0.00042827	0.56914	0.00028788	-0.27753	-0.00014038	505.82169317246957	104.11	1.6015	101.99	101.69	103.3	-2.1192					81	30	4	0	0	0	0.43433	1	9413	9413		63.534	12.198	1	519330			61503	2144	50754	50801	67372	67372					0.1239861261092301
VPAARSILAL	10	Unmodified	_VPAARSILAL_					0	0	0		ENSG00000101161|ENST00000266079|PRPF6;nc|ENSG00000101161|O94906-2|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	ENSG00000101161|ENST00000266079|PRPF6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	505.821484	1009.62842	-0.41928	-0.00021208	-0.13427	-6.7918E-05	-0.55356	-0.00028	505.8213567619826	103.49	1.3107	102.05	101.71	103.02	-1.4347	0.084181	-0.00066149	NaN	63.534	78	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	542310			61504	2144	50754	50801							0.1239861261092301
VPAEPKLAF	9	Unmodified	_VPAEPKLAF_					0	0	0		ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF;ENST00000449200.1_1_22:40502501-40502987:-|nuORF;ENST00000425095.1_1_10:35986317-35986536:+|nuORF	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	OvCa9_classI_Rep2	2	486.28118896484375	2	486.28166	970.548768	0.11902	5.7877E-05	0.21886	0.00010643	0.33788	0.0001643	486.28146624508815	93.351	1.5952	92.183	91.55	93.145	-1.168					65	30	3	0	0	0	0.11471	6	8326	8320;8326;8332;8339;8346;8352		93.195	21.269	1	553480			61505	5366	50755	50802	67373;67374;67375;67376;67377;67378	67374					0.06231545936930161
VPAEPKLAF	9	Unmodified	_VPAEPKLAF_					0	0	0		ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF;ENST00000449200.1_1_22:40502501-40502987:-|nuORF;ENST00000425095.1_1_10:35986317-35986536:+|nuORF	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	OvCa9_classI_Rep3	3	486.2821350097656	2	486.28166	970.548768	-1.3564	-0.00065959	1.6674	0.00081084	0.31105	0.00015126	486.28216569910614	94.023	1.9719	92.061	91.577	93.549	-1.9617					84	38	4	0	0	0	0.064985	5	6044	6044;6049;6055;6061;6066		110.12	22.366	1	831570			61506	5366	50755	50802	67379;67380;67381;67382;67383	67379					0.06231545936930161
VPAEPKLAF	9	Unmodified	_VPAEPKLAF_					0	0	0		ENSG00000147604|ENST00000352983|RPL7;ENST00000461190.1_1_3:123871117-123871351:-|nuORF;ENST00000449200.1_1_22:40502501-40502987:-|nuORF;ENST00000425095.1_1_10:35986317-35986536:+|nuORF	ENSG00000147604|ENST00000352983|RPL7	ENSG00000147604|ENST00000352983|RPL7	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.2810363769531	2	486.28166	970.548768	-0.29519	-0.00014354	0.194	9.434E-05	-0.10118	-4.9203E-05	486.2814884171507	94.6	2.2752	92.132	91.341	93.616	-2.4685					97	45	5	0	0	0	0.094616	3	8280	8280;8289;8301		98.629	32.2	1	721310			61507	5366	50755	50802	67384;67385;67386	67384					0.06231545936930161
VPAEWIKN	8	Unmodified	_VPAEWIKN_					0	0	0		ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	ENSG00000125676|ENST00000245838|THOC2	MULTI-MSMS	OvCa9_classI_Rep2	2	478.7616882324219	2	478.763635	955.512717	-1.3331	-0.00063822	-3.1793	-0.0015222	-4.5124	-0.0021604	478.76197908544503	53.514	1.6905	50.7	50.231	51.922	-2.8139					84	33	4	0	0	0	0.66704	1	3621	3621		50.025	2.1089	1	447130			61508	3721	50756	50803	67387	67387					0.03318088760090632
VPAGADECTFR	11	Carbamidomethyl (C)	_VPAGADEC(Carbamidomethyl (C))TFR_	VPAGADEC(1)TFR		VPAGADEC(49)TFR		0	1	0			REV__nc|ENSG00000188263|Q6ZVW7-2|IL17REL	REV__nc|ENSG00000188263|Q6ZVW7-2|IL17REL	MULTI-MSMS	OvCa9_classI_Rep4_	4	408.1912841796875	3	408.188884	1221.54482	1.3224	0.00053978	1.2196	0.00049782	2.542	0.0010376	408.1893070999877	56.778	1.5272	53.433	53.12	54.647	-3.3449					65	29	3	0	0	0	0.55686	1	3659	3659		48.602	14.515	1	603560	+		61509	22701	50757	50804	67388	67388	263				-0.057089116190809364
VPAGADECTFR	11	Carbamidomethyl (C)	_VPAGADEC(Carbamidomethyl (C))TFR_					0	1	0			REV__nc|ENSG00000188263|Q6ZVW7-2|IL17REL	REV__nc|ENSG00000188263|Q6ZVW7-2|IL17REL	MULTI-MATCH	OvCa9_classI_Rep2	2		3	408.188884	1221.54482	0.32772	0.00013377	2.7481	0.0011217	3.0758	0.0012555	408.18985337247614	56.358	1.0412	53.554	53.225	54.266	-2.804	0.060564	0.001302	NaN	48.602	48	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90492	+		61510	22701	50757	50804			263				-0.057089116190809364
VPAGADECTFR	11	Carbamidomethyl (C)	_VPAGADEC(Carbamidomethyl (C))TFR_					0	1	0			REV__nc|ENSG00000188263|Q6ZVW7-2|IL17REL	REV__nc|ENSG00000188263|Q6ZVW7-2|IL17REL	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		3	408.188884	1221.54482	1.3224	0.00053978	1.2196	0.00049782	2.542	0.0010376	408.1893070999877	56.778	1.5272	53.433	53.12	54.647	-3.3449	-0.060564	-0.00056971	NaN	48.602	65	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	603560	+		61511	22701	50757	50804			263				-0.057089116190809364
VPAGVQKI	8	Unmodified	_VPAGVQKI_					0	0	0		tr|A0A553SLF0|A0A553SLF0_NIACITerDfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20485PE=3SV=1	tr|A0A553SLF0|A0A553SLF0_NIACITerDfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20485PE=3SV=1	tr|A0A553SLF0|A0A553SLF0_NIACITerDfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_20485PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.21783447265625	2	406.255446	810.496338	0.82362	0.0003346	-0.2329	-9.4617E-05	0.59072	0.00023998	406.2552531162709	55.823	0.53174	55.823	55.52	56.052	0					21	12	2	0	0	0	0.028476	1	4622	4622		20.482	0	1	386170			61512	33715	50758	50805	67389	67389					0.08351007593978466
VPAHFVAL	8	Unmodified	_VPAHFVAL_					0	0	0		nc|ENSG00000166278|P06681-3|C2;ENSG00000166278|ENST00000299367|C2;ENST00000486124.5_1_6:31905151-31913001:+|nuORF;nc|ENSG00000166278|P06681-2|C2	nc|ENSG00000166278|P06681-3|C2	nc|ENSG00000166278|P06681-3|C2	MULTI-MSMS	OvCa9_classI_Rep2	2	427.2496337890625	2	427.250163	852.485774	1.5566	0.00066506	-1.1876	-0.00050739	0.36903	0.00015767	427.2495609985841	89.973	1.9784	88.671	88.334	90.312	-1.302					100	38	4	0	0	0	0.64315	5	7930	7930;7936;7942;7948;7963		54.895	12.498	1	774900			61513	6661	50759	50806	67390;67391;67392;67393;67394	67390					0.05363024939561001
VPAHFVAL	8	Unmodified	_VPAHFVAL_					0	0	0		nc|ENSG00000166278|P06681-3|C2;ENSG00000166278|ENST00000299367|C2;ENST00000486124.5_1_6:31905151-31913001:+|nuORF;nc|ENSG00000166278|P06681-2|C2	nc|ENSG00000166278|P06681-3|C2	nc|ENSG00000166278|P06681-3|C2	MULTI-MSMS	OvCa9_classI_Rep3	3	427.25048828125	2	427.250163	852.485774	-0.12002	-5.1277E-05	0.23735	0.00010141	0.11734	5.0132E-05	427.250219939796	90.725	1.7223	88.644	88.31	90.033	-2.0805					97	33	4	0	0	0	0.58426	7	5644	5636;5638;5644;5650;5657;5663;5672		67.327	12.433	1	1166500			61514	6661	50759	50806	67395;67396;67397;67398;67399;67400;67401	67397					0.05363024939561001
VPAHFVAL	8	Unmodified	_VPAHFVAL_					0	0	0		nc|ENSG00000166278|P06681-3|C2;ENSG00000166278|ENST00000299367|C2;ENST00000486124.5_1_6:31905151-31913001:+|nuORF;nc|ENSG00000166278|P06681-2|C2	nc|ENSG00000166278|P06681-3|C2	nc|ENSG00000166278|P06681-3|C2	MULTI-MSMS	OvCa9_classI_Rep4_	4	427.25103759765625	2	427.250163	852.485774	-0.0003826	-1.6347E-07	0.098598	4.2126E-05	0.098215	4.1963E-05	427.2501816902849	91.257	1.6797	88.715	88.346	90.026	-2.5425					92	32	4	0	0	0	0.64315	2	7885	7885;7897		54.895	11.269	1	993980			61515	6661	50759	50806	67402;67403	67402					0.05363024939561001
VPAHWWAW	8	Unmodified	_VPAHWWAW_					0	0	0			REV__AluSz_dup26871|chr5:14396444-14396769:-|1.0029512423417093|0.0144398167027111|6.12|429.0|2|1|sense	REV__AluSz_dup26871|chr5:14396444-14396769:-|1.0029512423417093|0.0144398167027111|6.12|429.0|2|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.7783203125	2	526.758687	1051.50282	-0.47952	-0.00025259	2.7938	0.0014717	2.3143	0.0012191	526.7613227616988	47.548	0.69359	47.548	47.379	48.073	0					13	5	3	0	0	0	0.028476	1	3460	3460		24.504	11.545	1	352690	+		61516	15614	50760	50807	67404	67404					-0.020870544546369274
VPAIVLIVYH	10	Unmodified	_VPAIVLIVYH_					0	0	0			REV__ENST00000486074.2_1_10:60966594-61005348:+|nuORF	REV__ENST00000486074.2_1_10:60966594-61005348:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.31787109375	2	562.347335	1122.68012	-0.42543	-0.00023924	-2.8161	-0.0015836	-3.2415	-0.0018228	562.3445306646272	65.997	0.26904	65.997	65.79	66.059	0					9	6	2	0	0	0	0.027147	1	6094	6094		26.796	7.4361	1	139810	+		61517	21088	50761	50808	67405	67405					0.12368356304841654
VPAKKITAA	9	Unmodified	_VPAKKITAA_					0	0	0		ENSG00000188846|ENST00000396203|RPL14	ENSG00000188846|ENST00000396203|RPL14	ENSG00000188846|ENST00000396203|RPL14	MULTI-MSMS	OvCa9_classI_Rep4_	4	449.78973388671875	2	449.789653	897.564752	1.5125	0.00068032	-1.4489	-0.00065171	0.063615	2.8613E-05	449.788866056534	36.413	1.3964	33.564	33.238	34.635	-2.849					59	27	3	0	0	0	0.21231	3	1251	1251;1262;1275		74.255	28.303	1	197580			61518	8509	50762	50809	67406;67407;67408	67406					0.11187252173829165
VPAKKWDN	8	Unmodified	_VPAKKWDN_					0	0	0		chr19:32731883-32738856|104|28.57|0.86|5.06|+|ENST00000647536|TDRD12,TDRD12;chr19:32798435-32800167|100|13.01|0.19|6.13|+|ENST00000647536|TDRD12,TDRD12;chr19:32821139-32826098|165|14.05|0.47|4.9|+|ENST00000647536|TDRD12,TDRD12;chr19:32818157-32821033|152|13.22|0.53|4.64|+|ENST00000647536|TDRD12,TDRD12;chr19:32815620-32818089|135|13.1|0.49|4.75|+|ENST00000647536|TDRD12,TDRD12;chr19:32813776-32815448|139|16.72|0.53|4.98|+|ENST00000647536|TDRD12,TDRD12;chr19:32811420-32813684|131|15.54|0.45|5.12|+|ENST00000647536|TDRD12,TDRD12;chr19:32810277-32811210|156|14.54|0.46|4.99|+|ENST00000647536|TDRD12,TDRD12;chr19:32807648-32810093|114|14.91|0.34|5.48|+|ENST00000647536|TDRD12,TDRD12;chr19:32801873-32802656|139|14.81|0.36|5.35|+|ENST00000647536|TDRD12,TDRD12;chr19:32800772-32801756|126|14.63|0.37|5.31|+|ENST00000647536|TDRD12,TDRD12;chr19:32802789-32802922|108|15.69|0.41|5.25|+|ENST00000647536|TDRD12,TDRD12;chr19:32797891-32798308|119|12.01|0.22|5.75|+|ENST00000647536|TDRD12,TDRD12;chr19:32794813-32797735|98|12.42|0.27|5.5|+|ENST00000647536|TDRD12,TDRD12;chr19:32791068-32794628|119|12.08|0.3|5.31|+|ENST00000647536|TDRD12,TDRD12;chr19:32790591-32790964|124|10.79|0.19|5.84|+|ENST00000647536|TDRD12,TDRD12;chr19:32749869-32755992|122|31.96|0.99|5.02|+|ENST00000647536|TDRD12,TDRD12;chr19:32748531-32749784|99|29.09|0.97|4.91|+|ENST00000647536|TDRD12,TDRD12;chr19:32738992-32742781|92|29.05|0.94|4.95|+|ENST00000647536|TDRD12,TDRD12;chr19:32800358-32800644|113|15.08|0.33|5.5|+|ENST00000647536|TDRD12,TDRD12;ENSG00000173809|ENST00000639142|TDRD12;nc|ENSG00000173809|Q587J7-2|TDRD12;chr19:32803142-32807549|130|16.52|0.36|5.5|+|ENST00000444215|TDRD12,TDRD12;nc|ENSG00000173809|Q587J7|TDRD12;chr19:32790591-32790674|86|10.87|0.22|5.6|+|ENST00000421545|TDRD12,TDRD12	chr19:32731883-32738856|104|28.57|0.86|5.06|+|ENST00000647536|TDRD12,TDRD12	chr19:32731883-32738856|104|28.57|0.86|5.06|+|ENST00000647536|TDRD12,TDRD12	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.77978515625	2	479.261259	956.507966	0.19729	9.4552E-05	0.39949	0.00019146	0.59677	0.00028601	479.26271380529806	75.282	0.48446	72.051	71.867	72.351	-3.2308					23	9	3	0	0	0	0.028476	1	5905	5905		26.796	17.974	1	86603			61519	411	50763	50810	67409	67409					0.027972046173204035
VPAKRTGIL	9	Unmodified	_VPAKRTGIL_					0	0	0		nc|ENSG00000172403|Q9UMS6-4|SYNPO2;ENSG00000172403|ENST00000307142|SYNPO2;nc|ENSG00000172403|Q9UMS6|SYNPO2;nc|ENSG00000172403|Q9UMS6-3|SYNPO2;nc|ENSG00000172403|Q9UMS6-5|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	nc|ENSG00000172403|Q9UMS6-4|SYNPO2	MULTI-MSMS	OvCa9_classI_Rep2	2	477.8079528808594	2	477.808377	953.6022	-2.2806	-0.0010897	2.086	0.00099673	-0.19457	-9.2967E-05	477.80923760882655	37.498	1.0346	34.788	34.534	35.568	-2.7097					41	20	3	0	0	0	0.64427	1	1697	1697		26.693	2.4902	1	138380			61520	7296	50764	50811	67410	67410					0.12354343439471904
VPALPRTL	8	Unmodified	_VPALPRTL_					0	0	0		ENST00000480424.6_1_16:630268-633631:+|nuORF	ENST00000480424.6_1_16:630268-633631:+|nuORF	ENST00000480424.6_1_16:630268-633631:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	433.7776184082031	2	433.776545	865.538538	-0.17823	-7.7312E-05	0.078129	3.389E-05	-0.1001	-4.3422E-05	433.7764143127158	95.332	1.2932	93.436	93.111	94.404	-1.8956					62	25	4	0	0	0	0.50674	1	6212	6212		76.847	5.5509	1	364400			61521	12528	50765	50812	67411	67411					0.10038983002368695
VPAPAKRA	8	Unmodified	_VPAPAKRA_					0	0	0			REV__ENSG00000225830|ENST00000355832|ERCC6;REV__nc|ENSG00000225830|P0DP91|ERCC6	REV__ENSG00000225830|ENST00000355832|ERCC6	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.877197265625	2	405.253237	808.491922	0.97521	0.00039521	-0.66387	-0.00026903	0.31134	0.00012617	405.252812537588	47.661	0.6508	47.661	47.422	48.073	0					31	14	3	0	0	0	0.028476	1	3482	3482		1.3276	0	1	558670	+		61522	23366;29141	50766	50813	67412	67412					0.08001543171076264
VPAPRAVAV	9	Unmodified	_VPAPRAVAV_					0	0	0			REV__ENSG00000056097|ENST00000265069|ZFR	REV__ENSG00000056097|ENST00000265069|ZFR	MULTI-MSMS	OvCa9_classI_Rep2	2	440.2749938964844	2	440.27417	878.533787	0.28781	0.00012672	-0.049613	-2.1843E-05	0.2382	0.00010487	440.27403271450976	68.809	1.5907	66.189	65.622	67.213	-2.6203					74	31	3	0	0	0	0.25214	1	5437	5437		68.485	8.1907	1	518090	+		61523	16715	50767	50814	67413	67413					0.08966098859605154
VPAPRAVAV	9	Unmodified	_VPAPRAVAV_					0	0	0			REV__ENSG00000056097|ENST00000265069|ZFR	REV__ENSG00000056097|ENST00000265069|ZFR	MULTI-MSMS	OvCa9_classI_Rep4_	4	440.2752990722656	2	440.27417	878.533787	-0.85782	-0.00037767	0.83691	0.00036847	-0.020903	-9.2029E-06	440.27448067049585	69.643	1.5537	66.162	65.861	67.415	-3.4812					80	31	4	0	0	0	0.17908	2	5221	5212;5221		79.939	16.961	1	1986400	+		61524	16715	50767	50814	67414;67415	67415					0.08966098859605154
VPAPRAVAV	9	Unmodified	_VPAPRAVAV_					0	0	0			REV__ENSG00000056097|ENST00000265069|ZFR	REV__ENSG00000056097|ENST00000265069|ZFR	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	440.27417	878.533787	0.28781	0.00012672	-0.049613	-2.1843E-05	0.2382	0.00010487	440.27403271450976	68.809	1.5907	66.189	65.622	67.213	-2.6203	0.04536	-0.0005669	NaN	79.939	74	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	518090	+		61525	16715	50767	50814							0.08966098859605154
VPAPRAVAV	9	Unmodified	_VPAPRAVAV_					0	0	0			REV__ENSG00000056097|ENST00000265069|ZFR	REV__ENSG00000056097|ENST00000265069|ZFR	MULTI-MATCH	OvCa9_classI_Rep3	3		2	440.27417	878.533787	1.0265	0.00045192	-0.4115	-0.00018117	0.61495	0.00027075	440.27406814782523	68.895	0.29785	66.081	65.964	66.261	-2.8144	-0.063204	-0.00088556	NaN	79.939	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7124.6	+		61526	16715	50767	50814							0.08966098859605154
VPAQPAGFGL	10	Unmodified	_VPAQPAGFGL_					0	0	0			REV__nc|ENSG00000110713|P52948-2|NUP98	REV__nc|ENSG00000110713|P52948-2|NUP98	MULTI-MSMS	OvCa9_classI_Rep2	2	478.7614440917969	2	478.763635	955.512717	-1.3331	-0.00063822	-3.1793	-0.0015222	-4.5124	-0.0021604	478.76197908544503	53.514	1.6905	50.7	50.231	51.922	-2.8139					84	33	4	0	0	0	0.56767	1	3654	3654		45.952	6.6991	1	447130	+		61527	17999	50768	50815	67416	67416					0.03318088760090632
VPAQPQLLGP	10	Unmodified	_VPAQPQLLGP_					0	0	0			REV__ENST00000292174.4_1_11:118767763-118768351:+|nuORF	REV__ENST00000292174.4_1_11:118767763-118768351:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.81268310546875	2	510.297842	1018.58113	-0.82615	-0.00042158	0.87407	0.00044604	0.047922	2.4454E-05	510.29832221281833	121.46	0.44473	121.26	121.05	121.49	-0.19718					14	8	2	0	0	0	0.027021	1	11712	11712		21.96	1.9631	1	11849	+		61528	24160	50769	50816	67417	67417					0.07258333339950696
VPARILVDL	9	Unmodified	_VPARILVDL_					0	0	0		ENST00000480182.1_1_2:130940128-130948196:+|nuORF	ENST00000480182.1_1_2:130940128-130948196:+|nuORF	ENST00000480182.1_1_2:130940128-130948196:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3159484863281	2	498.316035	994.617516	0.7807	0.00038904	-1.1222	-0.00055921	-0.3415	-0.00017018	498.31525557924255	111.08	1.6999	109.97	109.44	111.14	-1.1038					98	33	7	0	0	0	0.22621	1	8050	8050		71.877	2.2498	1	1109600			61529	12519	50770	50817	67418	67418					0.11999210236660929
VPARVAPAT	9	Unmodified	_VPARVAPAT_					0	0	0		ENST00000320623.9_1_16:69752155-69760649:-|nuORF	ENST00000320623.9_1_16:69752155-69760649:-|nuORF	ENST00000320623.9_1_16:69752155-69760649:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	440.2752990722656	2	441.263802	880.513051	-0.88564	-0.0003908	0.41538	0.00018329	-0.47027	-0.00020751	441.26354125339145	69.455	0.44075	65.974	65.713	66.153	-3.4812					11	8	2	0	0	0	0.027462	1	5221	5221		45.952	27.628	1	14480			61530	10367	50771	50818	67419	67419					0.06801508479941276
VPASFRLQM	9	Oxidation (M)	_VPASFRLQM(Oxidation (M))_		VPASFRLQM(1)		VPASFRLQM(85)	0	0	1		nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	MULTI-MSMS	OvCa9_classI_Rep2	2	532.7814331054688	2	532.781502	1063.54845	-0.86581	-0.00046129	2.1851	0.0011642	1.3193	0.00070289	532.7817356667078	78.904	2.0765	77.164	76.249	78.325	-1.7398					106	40	4	0	0	0	0.14855	3	6625	6613;6619;6625		85.161	15.195	1	269330			61531	8748	50772	50819	67420;67421;67422	67422		265			0.01921802945435047
VPASFRLQM	9	Oxidation (M)	_VPASFRLQM(Oxidation (M))_		VPASFRLQM(1)		VPASFRLQM(96)	0	0	1		nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	MULTI-MSMS	OvCa9_classI_Rep3	3	532.7839965820312	2	532.781502	1063.54845	0.48988	0.000261	-0.51871	-0.00027636	-0.028826	-1.5358E-05	532.7810344059089	79.091	2.0554	76.751	76.213	78.268	-2.3399					100	40	4	0	0	0	0.10502	6	4242	4242;4248;4254;4260;4266;4274		95.815	35.521	1	1037300			61532	8748	50772	50819	67423;67424;67425;67426;67427;67428	67423		265			0.01921802945435047
VPASFRLQM	9	Oxidation (M)	_VPASFRLQM(Oxidation (M))_		VPASFRLQM(1)		VPASFRLQM(96)	0	0	1		nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.7839965820312	2	532.781502	1063.54845	-1.4585	-0.00077705	1.0096	0.00053788	-0.44891	-0.00023917	532.7819960656624	79.683	1.932	76.932	76.227	78.159	-2.7514					78	39	3	0	0	0	0.10502	3	6475	6475;6487;6499		95.815	24.437	1	1076100			61533	8748	50772	50819	67429;67430;67431	67429		265			0.01921802945435047
VPASFRLQM	9	Unmodified	_VPASFRLQM_					0	0	0		nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	MULTI-MSMS	OvCa9_classI_Rep2	2	524.782958984375	2	524.784044	1047.55354	-0.085912	-4.5085E-05	-0.062593	-3.2848E-05	-0.14851	-7.7933E-05	524.7838587313598	97.743	1.5275	96.785	96.464	97.991	-0.95857					48	30	2	0	0	0	0.22035	3	8856	8856;8862;8868		72.879	20.792	1	355950			61534	8748	50772	50820	67432;67433;67434	67432					0.03166106808043878
VPASFRLQM	9	Unmodified	_VPASFRLQM_					0	0	0		nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	MULTI-MSMS	OvCa9_classI_Rep3	3	524.7843017578125	2	524.784044	1047.55354	-0.62906	-0.00033012	0.7896	0.00041437	0.16054	8.4249E-05	524.7841814450373	98.584	1.5412	96.855	96.09	97.631	-1.7295					53	21	3	0	0	0	0.29519	2	6596	6596;6608		63.534	22.961	1	382370			61535	8748	50772	50820	67435;67436	67435					0.03166106808043878
VPASFRLQM	9	Unmodified	_VPASFRLQM_					0	0	0		nc|ENSG00000197771|Q9BTE3-3|MCMBP;ENSG00000197771|ENST00000369077|MCMBP;nc|ENSG00000197771|Q9BTE3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	nc|ENSG00000197771|Q9BTE3-3|MCMBP	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.7838745117188	2	524.784044	1047.55354	-1	-0.00052481	0.94983	0.00049845	-0.050223	-2.6356E-05	524.7843182315887	99.16	1.3828	96.835	96.433	97.816	-2.3253					57	26	3	0	0	0	0.1944	1	8842	8842		77.318	34.921	1	401470			61536	8748	50772	50820	67437	67437					0.03166106808043878
VPASHMSSL	9	Unmodified	_VPASHMSSL_					0	0	0		RFX7|p.Q1124Nfs*5|1|0.19|ENSG00000181827|chr15:56094059-56094068|GCTTCTTTGA/-|frameshift_variant;nc|ENSG00000181827|Q2KHR2-1|RFX7;nc|ENSG00000181827|Q2KHR2-2|RFX7;ENSG00000181827|ENST00000559447|RFX7;RFX7|p.T435Nfs*16|1|0.15|ENSG00000181827|chr15:56096135-56096136|-/C|frameshift_variant	RFX7|p.Q1124Nfs*5|1|0.19|ENSG00000181827|chr15:56094059-56094068|GCTTCTTTGA/-|frameshift_variant	RFX7|p.Q1124Nfs*5|1|0.19|ENSG00000181827|chr15:56094059-56094068|GCTTCTTTGA/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.2802429199219	2	464.731477	927.448402	0.064941	3.018E-05	0.15088	7.012E-05	0.21582	0.0001003	464.7313603552715	64.719	1.356	61.234	60.969	62.325	-3.4854					57	27	3	0	0	0	0.027426	1	4732	4732		53.351	18.199	1	372940			61537	7958	50773	50821	67438	67438					-0.018224343883503025
VPASHMSSL	9	Unmodified	_VPASHMSSL_					0	0	0		RFX7|p.Q1124Nfs*5|1|0.19|ENSG00000181827|chr15:56094059-56094068|GCTTCTTTGA/-|frameshift_variant;nc|ENSG00000181827|Q2KHR2-1|RFX7;nc|ENSG00000181827|Q2KHR2-2|RFX7;ENSG00000181827|ENST00000559447|RFX7;RFX7|p.T435Nfs*16|1|0.15|ENSG00000181827|chr15:56096135-56096136|-/C|frameshift_variant	RFX7|p.Q1124Nfs*5|1|0.19|ENSG00000181827|chr15:56094059-56094068|GCTTCTTTGA/-|frameshift_variant	RFX7|p.Q1124Nfs*5|1|0.19|ENSG00000181827|chr15:56094059-56094068|GCTTCTTTGA/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	464.731477	927.448402	-0.78516	-0.00036489	1.1424	0.0005309	0.35722	0.00016601	464.7318679175131	64	1.0549	61.275	60.915	61.97	-2.7245	0.020665	0.00031524	NaN	53.351	35	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	59034			61538	7958	50773	50821							-0.018224343883503025
VPASLIQP	8	Unmodified	_VPASLIQP_					0	0	0		CAMTA1|p.V1621Gfs*12|1|0.03|ENSG00000171735|chr1:7751370-7751371|-/GGGACCACGTGGTTATTCAGCTGGAGTGGGTT|frameshift_variant;nc|ENSG00000171735|Q9Y6Y1-2|CAMTA1;ENSG00000171735|ENST00000303635|CAMTA1	CAMTA1|p.V1621Gfs*12|1|0.03|ENSG00000171735|chr1:7751370-7751371|-/GGGACCACGTGGTTATTCAGCTGGAGTGGGTT|frameshift_variant	CAMTA1|p.V1621Gfs*12|1|0.03|ENSG00000171735|chr1:7751370-7751371|-/GGGACCACGTGGTTATTCAGCTGGAGTGGGTT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	412.7459716796875	2	412.747453	823.480354	0.75275	0.0003107	-3.7611	-0.0015524	-3.0083	-0.0012417	412.74581316945023	134.99	1.618	134.76	134.29	135.91	-0.22696					65	32	3	0	0	0	0.72922	1	13417	13417		37.028	0	1	284470			61539	182	50774	50822	67439	67439					0.06155301357091503
VPATDRNAL	9	Unmodified	_VPATDRNAL_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;INADL-EIF3E|1|fusion	ENSG00000104408|ENST00000220849|EIF3E;INADL-EIF3E|1|fusion	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	OvCa9_classI_Rep2	2	478.76141357421875	2	478.761623	955.508694	-1.3331	-0.00063822	1.0218	0.00048922	-0.31121	-0.000149	478.76197908544503	53.514	1.6905	50.7	50.231	51.922	-2.8139					84	33	4	0	0	0	0.12515	4	3611	3611;3616;3627;3639		90.37	28.262	1	447130			61540	2373;14505	50775	50823	67440;67441;67442;67443	67440					0.029159992663721823
VPATDRNAL	9	Unmodified	_VPATDRNAL_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;INADL-EIF3E|1|fusion	ENSG00000104408|ENST00000220849|EIF3E;INADL-EIF3E|1|fusion	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.7629089355469	2	478.761623	955.508694	-0.73243	-0.00035066	0.24325	0.00011646	-0.48918	-0.0002342	478.7617239946443	53.641	1.6889	50.393	50.006	51.695	-3.2474					89	32	5	0	0	0	0.042513	6	3295	3261;3271;3283;3295;3307;3331		124.59	35.865	1	2637300			61541	2373;14505	50775	50823	67444;67445;67446;67447;67448;67449	67447					0.029159992663721823
VPATDRNAL	9	Unmodified	_VPATDRNAL_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;INADL-EIF3E|1|fusion	ENSG00000104408|ENST00000220849|EIF3E;INADL-EIF3E|1|fusion	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MATCH	OvCa99_classI_Rep5	1		2	478.761623	955.508694	-0.49942	-0.0002391	0.68094	0.00032601	0.18152	8.6906E-05	478.7616348506605	50.677	0.5307	50.677	50.376	50.907	0	0.086751	9.2209E-05	NaN	124.59	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	347580			61542	2373;14505	50775	50823							0.029159992663721823
VPATREAEL	9	Unmodified	_VPATREAEL_					0	0	0		AluY_dup98873|chr19:54106194-54106468:-|1.0550791275867215|0.0649823089056785|4.02|429.0|11|3|sense	AluY_dup98873|chr19:54106194-54106468:-|1.0550791275867215|0.0649823089056785|4.02|429.0|11|3|sense	AluY_dup98873|chr19:54106194-54106468:-|1.0550791275867215|0.0649823089056785|4.02|429.0|11|3|sense	MULTI-MSMS	OvCa9_classI_Rep3	3	493.27227783203125	2	493.269281	984.52401	-0.98271	-0.00048474	0.73005	0.00036011	-0.25265	-0.00012463	493.26962580673876	76.279	1.095	73.907	73.62	74.715	-2.3715					68	20	4	0	0	0	0.2422	1	3927	3927		69.628	6.6492	1	878070			61543	83	50776	50824	67450	67450					0.031128660635545202
VPATREAEL	9	Unmodified	_VPATREAEL_					0	0	0		AluY_dup98873|chr19:54106194-54106468:-|1.0550791275867215|0.0649823089056785|4.02|429.0|11|3|sense	AluY_dup98873|chr19:54106194-54106468:-|1.0550791275867215|0.0649823089056785|4.02|429.0|11|3|sense	AluY_dup98873|chr19:54106194-54106468:-|1.0550791275867215|0.0649823089056785|4.02|429.0|11|3|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.27392578125	2	493.269281	984.52401	-0.10647	-5.2519E-05	0.042674	2.105E-05	-0.063798	-3.1469E-05	493.26921613025036	77.343	0.87246	74.527	74.244	75.116	-2.8165					55	17	4	0	0	0	0.3076	1	6183	6183		62.107	9.1707	1	872090			61544	83	50776	50824	67451	67451					0.031128660635545202
VPATREAEL	9	Unmodified	_VPATREAEL_					0	0	0		AluY_dup98873|chr19:54106194-54106468:-|1.0550791275867215|0.0649823089056785|4.02|429.0|11|3|sense	AluY_dup98873|chr19:54106194-54106468:-|1.0550791275867215|0.0649823089056785|4.02|429.0|11|3|sense	AluY_dup98873|chr19:54106194-54106468:-|1.0550791275867215|0.0649823089056785|4.02|429.0|11|3|sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	493.269281	984.52401	-0.11758	-5.7998E-05	-1.7644	-0.00087032	-1.882	-0.00092831	493.26795088604337	76.33	2.2453	74.476	73.837	76.082	-1.854	-0.025344	-0.0016779	NaN	62.107	63	42	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297960			61545	83	50776	50824							0.031128660635545202
VPAVRRLS	8	Unmodified	_VPAVRRLS_					0	0	0			REV__ENST00000323301.8_1_9:130213841-130213949:+|nuORF	REV__ENST00000323301.8_1_9:130213841-130213949:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	449.26239013671875	2	449.285069	896.555585	0.39803	0.00017883	-1.217	-0.00054679	-0.81901	-0.00036797	449.2845149632204	57.969	0.90244	54.624	54.444	55.347	-3.3449					27	17	3	0	0	0	0.028476	1	3869	3869		51.335	6.8044	1	55784	+		61546	24234	50777	50825	67452	67452					0.10316903608190842
VPAVRRLS	8	Unmodified	_VPAVRRLS_					0	0	0			REV__ENST00000323301.8_1_9:130213841-130213949:+|nuORF	REV__ENST00000323301.8_1_9:130213841-130213949:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	449.285069	896.555585	1.957	0.00087924	-2.2856	-0.0010269	-0.32858	-0.00014763	449.2840018580264	57.294	1.4888	54.502	53.634	55.122	-2.792	-0.061296	-0.00019125	NaN	51.335	39	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42123	+		61547	24234	50777	50825							0.10316903608190842
VPCGRLGH	8	Unmodified	_VPCGRLGH_					0	0	0			REV__ENST00000377126.3_1_9:73028163-73028301:-|nuORF	REV__ENST00000377126.3_1_9:73028163-73028301:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.57769775390625	2	419.721247	837.427941	0.20919	8.7802E-05	-0.75468	-0.00031676	-0.54549	-0.00022895	419.7224476645892	33.261	0.19847	33.261	33.136	33.335	0					5	3	2	0	0	0	0.028476	1	1504	1504		26.796	12.132	1	8836.4	+		61548	25114	50778	50826	67453	67453					0.0027243974249131497
VPCIPVTNL	9	Unmodified	_VPCIPVTNL_					0	0	0			REV__ENST00000462410.5_1_1:211526581-211529879:+|nuORF	REV__ENST00000462410.5_1_1:211526581-211529879:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.3013916015625	2	478.267696	954.520839	-2.6017	-0.0012443	-3.4492	-0.0016496	-6.0509	-0.0028939	478.2658169919594	88.103	0.25185	85.501	85.377	85.629	-2.6027					6	4	2	0	0	0	0.02721	1	7497	7497		85.359	8.5128	1	5108.7	+		61549	17087	50779	50827	67454	67454					0.04175899685196782
VPCPLDVTL	9	Unmodified	_VPCPLDVTL_					0	0	0		ENST00000373109.6_1_10:73820069-73820282:-|nuORF	ENST00000373109.6_1_10:73820069-73820282:-|nuORF	ENST00000373109.6_1_10:73820069-73820282:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.76239013671875	2	478.759704	955.504854	-0.73243	-0.00035066	4.2534	0.0020364	3.521	0.0016857	478.7617239946443	53.641	1.6889	50.393	50.006	51.695	-3.2474					89	32	5	0	0	0	0.34496	1	3345	3345		57.811	2.3071	1	2637300			61550	10999	50780	50828	67455	67455					0.025321934483031328
VPDKACLAFI	10	Unmodified	_VPDKACLAFI_					0	0	0			REV__ENSG00000121892|ENST00000303538|PDS5A	REV__ENSG00000121892|ENST00000303538|PDS5A	MULTI-MSMS	OvCa99_classI_Rep5	1	538.7949829101562	2	538.794078	1075.5736	1.5981	0.00086102	1.0132	0.00054592	2.6113	0.0014069	538.7943484862544	133.26	0.68471	133.26	132.94	133.63	0					34	14	3	0	0	0	0.59317	1	15489	15489		42.864	12.361	1	217490	+		61551	18563	50781	50829	67456	67456					0.03883857747996444
VPDMKRPRLQ	10	Unmodified	_VPDMKRPRLQ_					0	0	0			REV__ENST00000412730.1_1_7:47805708-47805840:+|nuORF	REV__ENST00000412730.1_1_7:47805708-47805840:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	413.2688293457031	3	413.90453	1238.69176	0.057274	2.3706E-05	-1.852	-0.00076657	-1.7948	-0.00074286	413.90329596902376	41.899	0.60566	41.899	41.594	42.199	0					28	13	3	0	0	0	0.026646	1	2656	2656		53.089	17.911	1	225790	+		61552	25499	50782	50830	67457	67457					0.08196230056546483
VPDNRRLFEL	10	Unmodified	_VPDNRRLFEL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	OvCa9_classI_Rep2	2	420.2344970703125	3	420.234933	1257.68297	1.4258	0.00059916	-1.6693	-0.00070152	-0.24357	-0.00010236	420.23426080527724	91.222	3.0164	89.987	89.439	92.456	-1.2355					163	57	5	0	0	0	0.40664	5	8092	8068;8073;8085;8092;8124		67.494	5.8024	1	1547900			61553	1044	50783	50831	67458;67459;67460;67461;67462	67461					0.06443579691699597
VPDNRRLFEL	10	Unmodified	_VPDNRRLFEL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	OvCa9_classI_Rep3	3	420.2356872558594	3	420.234933	1257.68297	-0.48401	-0.0002034	-0.11454	-4.8134E-05	-0.59855	-0.00025153	420.2348652404624	92.172	2.6968	90.147	89.584	92.281	-2.0241					147	54	4	0	0	0	0.59317	4	5825	5813;5825;5838;5851		42.864	6.1772	1	1866100			61554	1044	50783	50831	67463;67464;67465;67466	67464					0.06443579691699597
VPDNRRLFEL	10	Unmodified	_VPDNRRLFEL_					0	0	0		ENSG00000024422|ENST00000263277|EHD2;nc|ENSG00000024422|Q9NZN4-2|EHD2	ENSG00000024422|ENST00000263277|EHD2	ENSG00000024422|ENST00000263277|EHD2	MULTI-MSMS	OvCa9_classI_Rep4_	4	420.23590087890625	3	420.234933	1257.68297	-1.395	-0.00058622	0.92433	0.00038843	-0.47065	-0.00019778	420.2353399671116	92.632	2.0245	90.125	89.602	91.627	-2.5072					112	41	4	0	0	0	0.44431	3	8052	8040;8052;8064		62.107	13.506	1	1691700			61555	1044	50783	50831	67467;67468;67469	67468					0.06443579691699597
VPDSSGPERIL	11	Unmodified	_VPDSSGPERIL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;HNRNPK|p.Y280Mfs*4|1|0.05|ENSG00000165119|chr9:83971997-83971997|A/-|frameshift_variant;HNRNPK-PTMS|1|fusion	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	OvCa9_classI_Rep2	2	585.3114013671875	2	585.311677	1168.6088	0.12476	7.3021E-05	-0.86599	-0.00050687	-0.74123	-0.00043385	585.3110910403809	80.11	2.2154	78.415	77.505	79.721	-1.6951					128	43	4	0	0	0	0.14191	5	6744	6744;6750;6755;6762;6769		88.177	29.395	1	548460			61556	6523	50784	50832	67470;67471;67472;67473;67474	67470					0.031241918095247456
VPDSSGPERIL	11	Unmodified	_VPDSSGPERIL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;HNRNPK|p.Y280Mfs*4|1|0.05|ENSG00000165119|chr9:83971997-83971997|A/-|frameshift_variant;HNRNPK-PTMS|1|fusion	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	OvCa9_classI_Rep3	3	585.31298828125	2	585.311677	1168.6088	-1.3695	-0.00080161	0.82304	0.00048174	-0.5465	-0.00031987	585.3121653232128	80.378	2.3814	78.055	77.378	79.759	-2.3226					82	46	2	0	0	0	0.05559	10	4405	4394;4399;4405;4411;4417;4422;4429;4435;4442;4449		112.3	38.04	1	1815500			61557	6523	50784	50832	67475;67476;67477;67478;67479;67480;67481;67482;67483;67484	67477					0.031241918095247456
VPDSSGPERIL	11	Unmodified	_VPDSSGPERIL_					0	0	0		nc|ENSG00000165119|P61978-3|HNRNPK;nc|ENSG00000165119|P61978|HNRNPK;ENSG00000165119|ENST00000376263|HNRNPK;HNRNPK|p.Y280Mfs*4|1|0.05|ENSG00000165119|chr9:83971997-83971997|A/-|frameshift_variant;HNRNPK-PTMS|1|fusion	nc|ENSG00000165119|P61978-3|HNRNPK	nc|ENSG00000165119|P61978-3|HNRNPK	MULTI-MSMS	OvCa9_classI_Rep4_	4	585.3132934570312	2	585.311677	1168.6088	-1.3225	-0.00077405	0.66239	0.00038771	-0.66007	-0.00038634	585.312037287661	80.876	2.4858	78.166	77.417	79.902	-2.7106					137	50	5	0	0	0	0.05374	7	6615	6593;6604;6615;6626;6638;6651;6677		125.71	65.595	1	1602700			61558	6523	50784	50832	67485;67486;67487;67488;67489;67490;67491	67487					0.031241918095247456
VPDTGRVEL	9	Unmodified	_VPDTGRVEL_					0	0	0			REV__nc|ENSG00000142733|O95382-3|MAP3K6	REV__nc|ENSG00000142733|O95382-3|MAP3K6	MULTI-MSMS	OvCa9_classI_Rep3	3	493.27520751953125	2	493.269281	984.52401	-0.98271	-0.00048474	0.73005	0.00036011	-0.25265	-0.00012463	493.26962580673876	76.279	1.095	73.907	73.62	74.715	-2.3715					68	20	4	0	0	0	0.3249	1	3932	3932		60.118	0	1	878070	+		61559	19805	50785	50833	67492	67492					0.031128660635772576
VPDTSRIYVAL	11	Unmodified	_VPDTSRIYVAL_					0	0	0		ENSG00000126756|ENST00000333119|UXT;nc|ENSG00000126756|Q9UBK9-2|UXT	ENSG00000126756|ENST00000333119|UXT	ENSG00000126756|ENST00000333119|UXT	MULTI-MSMS	OvCa9_classI_Rep2	2	617.3450927734375	2	617.34552	1232.67649	-0.81825	-0.00050514	0.39036	0.00024099	-0.42789	-0.00026415	617.3457004863567	105.95	1.8422	105.51	105	106.84	-0.43642					119	36	4	0	0	0	0.21819	7	9838	9835;9838;9844;9851;9857;9863;9876		77.533	33.727	1	806120			61560	3797	50786	50834	67493;67494;67495;67496;67497;67498;67499	67494					0.06945641740321662
VPDTSRIYVAL	11	Unmodified	_VPDTSRIYVAL_					0	0	0		ENSG00000126756|ENST00000333119|UXT;nc|ENSG00000126756|Q9UBK9-2|UXT	ENSG00000126756|ENST00000333119|UXT	ENSG00000126756|ENST00000333119|UXT	MULTI-MSMS	OvCa9_classI_Rep3	3	617.3451538085938	2	617.34552	1232.67649	1.5718	0.00097034	-2.0747	-0.0012808	-0.50286	-0.00031044	617.3441202371515	106.72	2.2943	105.46	104.9	107.2	-1.267					125	44	5	0	0	0	0.10199	9	7535	7530;7535;7541;7547;7555;7561;7567;7573;7579		96.665	47.224	1	1265400			61561	3797	50786	50834	67500;67501;67502;67503;67504;67505;67506;67507;67508	67501					0.06945641740321662
VPDTSRIYVAL	11	Unmodified	_VPDTSRIYVAL_					0	0	0		ENSG00000126756|ENST00000333119|UXT;nc|ENSG00000126756|Q9UBK9-2|UXT	ENSG00000126756|ENST00000333119|UXT	ENSG00000126756|ENST00000333119|UXT	MULTI-MSMS	OvCa9_classI_Rep4_	4	617.3470458984375	2	617.34552	1232.67649	-1.5268	-0.00094257	1.1509	0.00071053	-0.37586	-0.00023204	617.3461300850123	107.21	1.7582	105.34	104.85	106.61	-1.8785					116	34	5	0	0	0	0.2322	6	9807	9771;9783;9795;9807;9819;9834		75.652	31.275	1	955110			61562	3797	50786	50834	67509;67510;67511;67512;67513;67514	67512					0.06945641740321662
VPEEEEHGPTV	11	Unmodified	_VPEEEEHGPTV_					0	0	0			REV__ENSG00000178685|ENST00000313028|PARP10	REV__ENSG00000178685|ENST00000313028|PARP10	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.7830200195312	2	611.78295	1221.55135	0.52313	0.00032004	-3.399	-0.0020795	-2.8759	-0.0017594	611.7809539444518	56.794	1.9791	53.449	53.02	54.999	-3.3449					106	38	5	0	0	0	0.24327	2	3639	3639;3649		39.253	15.73	1	1519200	+		61563	22069	50787	50835	67515;67516	67515					-0.05056695186704019
VPEEEEHGPTV	11	Unmodified	_VPEEEEHGPTV_					0	0	0			REV__ENSG00000178685|ENST00000313028|PARP10	REV__ENSG00000178685|ENST00000313028|PARP10	MULTI-MATCH	OvCa9_classI_Rep2	2		2	611.78295	1221.55135	-1.3182	-0.00080644	-1.3623	-0.00083342	-2.6805	-0.0016399	611.7821360112922	56.384	1.2899	53.58	53.175	54.465	-2.804	0.065532	0.0013945	NaN	39.253	61	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226710	+		61564	22069	50787	50835							-0.05056695186704019
VPEEEEHGPTV	11	Unmodified	_VPEEEEHGPTV_					0	0	0			REV__ENSG00000178685|ENST00000313028|PARP10	REV__ENSG00000178685|ENST00000313028|PARP10	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	611.78295	1221.55135	0.52313	0.00032004	-3.399	-0.0020795	-2.8759	-0.0017594	611.7809539444518	56.794	1.9791	53.449	53.02	54.999	-3.3449	-0.065532	-0.0010975	NaN	39.253	106	38	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1519200	+		61565	22069	50787	50835							-0.05056695186704019
VPEEEIMKL	9	Unmodified	_VPEEEIMKL_					0	0	0		TAF1|p.K1019M|1|0.03|ENSG00000147133|chrX:71393308-71393308|A/T|missense_variant	TAF1|p.K1019M|1|0.03|ENSG00000147133|chrX:71393308-71393308|A/T|missense_variant	TAF1|p.K1019M|1|0.03|ENSG00000147133|chrX:71393308-71393308|A/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.8189086914062	2	544.288825	1086.5631	-0.022163	-1.2063E-05	3.1467	0.0017127	3.1246	0.0017007	544.2903951305291	57.041	0.82156	57.041	56.744	57.566	0					31	18	3	0	0	0	0.027392	1	4836	4836		73.975	13.003	1	902420			61566	32941	50788	50836	67517	67517					0.023278303029201197
VPEFTARIL	9	Unmodified	_VPEFTARIL_					0	0	0		ENSG00000068878|ENST00000404125|PSME4;nc|ENSG00000068878|Q14997-2|PSME4;nc|ENSG00000068878|Q14997-3|PSME4	ENSG00000068878|ENST00000404125|PSME4	ENSG00000068878|ENST00000404125|PSME4	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.3051147460938	2	523.305667	1044.59678	-1.9667	-0.0010292	2.463	0.0012889	0.49627	0.0002597	523.3072747512368	119.54	1.2463	118.19	117.68	118.93	-1.3444					55	23	4	0	0	0	0.3076	1	11229	11229		62.107	4.2961	1	258840			61567	1399	50789	50837	67518	67518					0.0762661985700106
VPEGFAHGF	9	Unmodified	_VPEGFAHGF_					0	0	0		tr|A0A7D7A6Z7|A0A7D7A6Z7_9CLOTdTDP-4-dehydrorhamnose3,5-epimeraseOS=ClostridiumintestinaleOX=36845GN=rfbCPE=3SV=1	tr|A0A7D7A6Z7|A0A7D7A6Z7_9CLOTdTDP-4-dehydrorhamnose3,5-epimeraseOS=ClostridiumintestinaleOX=36845GN=rfbCPE=3SV=1	tr|A0A7D7A6Z7|A0A7D7A6Z7_9CLOTdTDP-4-dehydrorhamnose3,5-epimeraseOS=ClostridiumintestinaleOX=36845GN=rfbCPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	480.76690673828125	2	480.732335	959.450116	-1.3244	-0.00063667	1.2288	0.00059074	-0.095559	-4.5938E-05	480.7325703716171	54.728	1.397	51.914	50.875	52.272	-2.8139					40	27	2	0	0	0	0.027441	1	3701	3701		52.299	2.2746	1	23949			61568	36202	50790	50838	67519	67519					-0.03123057308096122
VPEIKVVSNLP	11	Unmodified	_VPEIKVVSNLP_					0	0	0		ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	ENSG00000124383|ENST00000244230|MPHOSPH10	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8560791015625	2	597.858264	1193.70197	-1.5377	-0.00091935	-1.5701	-0.00093869	-3.1078	-0.001858	597.8570606153338	148.28	4.8676	146.85	145.38	150.25	-1.435					291	102	5	0	0	0	0.70142	1	14498	14498		29.17	1.0886	1	767860			61569	3647	50791	50839	67520	67520					0.11287116262769814
VPELEQVEL	9	Unmodified	_VPELEQVEL_					0	0	0			REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	MULTI-MSMS	OvCa9_classI_Rep3	3	528.2843627929688	2	528.284597	1054.55464	-2.691	-0.0014216	2.5626	0.0013538	-0.12841	-6.7835E-05	528.2858404974387	141.55	1.2874	140.54	140.14	141.43	-1.0106					66	25	4	0	0	0	0.27001	2	11695	11695;11712		66.429	2.222	1	289450	+		61570	17136	50792	50840	67521;67522	67521					0.029545996579599887
VPELEQVEL	9	Unmodified	_VPELEQVEL_					0	0	0			REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	REV__nc|ENSG00000085552|Q9P2J2-2|IGSF9	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.2844848632812	2	528.284597	1054.55464	-0.42245	-0.00022318	0.6144	0.00032458	0.19194	0.0001014	528.284824410708	142.01	0.99675	140.54	140.24	141.23	-1.4627					54	18	4	0	0	0	0.28934	2	13901	13901;13928		64.207	3.596	1	263670	+		61571	17136	50792	50840	67523;67524	67523					0.029545996579599887
VPEQRVARF	9	Unmodified	_VPEQRVARF_					0	0	0			REV__ENSG00000154175|ENST00000471714|ABI3BP	REV__ENSG00000154175|ENST00000471714|ABI3BP	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.7680053710938	2	551.311815	1100.60908	1.466	0.00080823	-3.6911	-0.0020349	-2.2251	-0.0012267	551.3099356823359	107.15	0.62979	107.15	106.89	107.52	0					18	14	2	0	0	0	0.027462	1	12124	12124		29.15	2.4566	1	350320	+		61572	20365	50793	50841	67525	67525					0.06279656320043614
VPEQVLPSVLP	11	Unmodified	_VPEQVLPSVLP_					0	0	0		ENST00000340634.4_1_3:142681054-142682041:-|nuORF	ENST00000340634.4_1_3:142681054-142682041:-|nuORF	ENST00000340634.4_1_3:142681054-142682041:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	589.341796875	2	589.344989	1176.67542	-4.3129	-0.0025418	0.73104	0.00043083	-3.5818	-0.0021109	589.3453728975387	144.79	3.9151	143.81	141.71	145.63	-0.97299					242	78	5	0	0	0	0.72324	1	12127	12127		21.686	0.73882	1	192050			61573	10561	50794	50842	67526	67526					0.09415427371436635
VPERREIIRQI	11	Unmodified	_VPERREIIRQI_					0	0	0		ENSG00000198793|ENST00000361445|MTOR;MTOR|p.L2016Tfs*10|1|0.16|ENSG00000198793|chr1:11127794-11127795|-/T|frameshift_variant;ENST00000495435.1_1_1:11193031-11204809:-|nuORF	ENSG00000198793|ENST00000361445|MTOR	ENSG00000198793|ENST00000361445|MTOR	MULTI-MSMS	OvCa99_classI_Rep5	1	470.616943359375	3	470.284287	1407.83103	-0.22638	-0.00010646	-1.8846	-0.00088628	-2.111	-0.00099275	470.283358283076	23.827	0.33937	23.827	23.647	23.987	0					11	6	2	0	0	0	0.72516	1	373	373		13.508	2.9211	1	86045			61574	8874	50795	50843	67527	67527					0.14342890945567888
VPESFEHL	8	Unmodified	_VPESFEHL_					0	0	0		ENSG00000166669|ENST00000562102|ATF7IP2	ENSG00000166669|ENST00000562102|ATF7IP2	ENSG00000166669|ENST00000562102|ATF7IP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.76263427734375	2	479.23745	956.460347	-0.77878	-0.00037322	-3.0918	-0.0014817	-3.8706	-0.0018549	479.2360084024259	53.906	0.51293	50.658	50.466	50.979	-3.2474					15	9	2	0	0	0	0.028476	1	3319	3319		52.299	24.045	1	17857			61575	6700	50796	50844	67528	67528					-0.019624943735266243
VPETRRKV	8	Unmodified	_VPETRRKV_					0	0	0		ENSG00000172009|ENST00000307741|THOP1	ENSG00000172009|ENST00000307741|THOP1	ENSG00000172009|ENST00000307741|THOP1	MULTI-MSMS	OvCa9_classI_Rep2	2	492.8004455566406	2	492.801083	983.587613	-0.24793	-0.00012218	-0.089465	-4.4088E-05	-0.33739	-0.00016627	492.8009419082902	56.6	1.5858	53.796	53.175	54.761	-2.804					103	31	4	0	0	0	0.64026	1	4019	4019		55.504	11.387	1	477380			61576	7260	50797	50845	67529	67529					0.09516271291317935
VPFAPAELK	9	Unmodified	_VPFAPAELK_					0	0	0		ENST00000559327.1_1_15:65676349-65688574:-|nuORF;nc|ENSG00000103742|Q8TDY8-2|IGDCC4;ENSG00000103742|ENST00000352385|IGDCC4;IGDCC4|p.V638A|1|0.14|ENSG00000103742|chr15:65392343-65392343|A/G|missense_variant	ENST00000559327.1_1_15:65676349-65688574:-|nuORF	ENST00000559327.1_1_15:65676349-65688574:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.2820129394531	2	486.28166	970.548768	-0.29519	-0.00014354	0.194	9.434E-05	-0.10118	-4.9203E-05	486.2814884171507	94.6	2.2752	92.132	91.341	93.616	-2.4685					97	45	5	0	0	0	0.37135	1	8315	8315		54.776	7.119	1	721310			61577	2340	50798	50846	67530	67530					0.062315459369415294
VPFDLHRYVI	10	Unmodified	_VPFDLHRYVI_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000470482.5_1_2:242174669-242176035:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OvCa9_classI_Rep3	3	420.2356872558594	3	420.236274	1257.68699	-0.48401	-0.0002034	-3.3054	-0.001389	-3.7894	-0.0015924	420.2348652404624	92.172	2.6968	90.147	89.584	92.281	-2.0241					147	54	4	0	0	0	0.59317	1	5808	5808		42.864	2.9911	1	1866100			61578	3119	50799	50847	67531	67531					0.06845669185395309
VPFDLHRYVI	10	Unmodified	_VPFDLHRYVI_					0	0	0		ENSG00000115677|ENST00000310931|HDLBP;nc|ENSG00000115677|Q00341-2|HDLBP;ENST00000487169.5_1_2:242174673-242189369:-|nuORF;ENST00000470482.5_1_2:242174669-242176035:-|nuORF	ENSG00000115677|ENST00000310931|HDLBP	ENSG00000115677|ENST00000310931|HDLBP	MULTI-MSMS	OvCa9_classI_Rep4_	4	420.2359619140625	3	420.236274	1257.68699	-1.395	-0.00058622	-2.2665	-0.00095248	-3.6615	-0.0015387	420.2353399671116	92.632	2.0245	90.125	89.602	91.627	-2.5072					112	41	4	0	0	0	0.59317	1	8029	8029		42.864	2.8061	1	1691700			61579	3119	50799	50847	67532	67532					0.06845669185395309
VPFHWNPSQ	9	Unmodified	_VPFHWNPSQ_					0	0	0			REV__nc|ENSG00000005102|P50221-2|MEOX1	REV__nc|ENSG00000005102|P50221-2|MEOX1	MULTI-MSMS	OvCa9_classI_Rep3	3	556.2720947265625	2	556.269616	1110.52468	1.3401	0.00074546	1.5546	0.00086479	2.8947	0.0016103	556.2703298502786	61.128	1.3911	58.06	57.54	58.931	-3.0685					61	39	2	0	0	0	0.63422	1	2125	2125		27.882	4.8398	1	29839	+		61580	16391	50800	50848	67533	67533					-0.026162944967154544
VPFPWGGVRL	10	Unmodified	_VPFPWGGVRL_					0	0	0		chr19:35505021-35505718|208|20.36|0.85|4.58|-|1|TE_info:MER102a,MER102a_dup2550,hAT-Charlie,DNA,acceptor,-,35504753,35505021|None,DMKN|4	chr19:35505021-35505718|208|20.36|0.85|4.58|-|1|TE_info:MER102a,MER102a_dup2550,hAT-Charlie,DNA,acceptor,-,35504753,35505021|None,DMKN|4	chr19:35505021-35505718|208|20.36|0.85|4.58|-|1|TE_info:MER102a,MER102a_dup2550,hAT-Charlie,DNA,acceptor,-,35504753,35505021|None,DMKN|4	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.3709716796875	2	564.321651	1126.62875	-0.020217	-1.1409E-05	1.073	0.00060553	1.0528	0.00059412	564.3221159253983	104.75	0.72482	104.75	104.36	105.09	0					18	13	2	0	0	0	0.027048	1	11770	11770		18.324	0	1	708440			61581	414	50801	50849	67534	67534					0.07050032330812428
VPFQLGRKL	9	Unmodified	_VPFQLGRKL_					0	0	0		nc|ENSG00000100997|Q8N2K0-3|ABHD12;ENSG00000100997|ENST00000339157|ABHD12;nc|ENSG00000100997|Q8N2K0-2|ABHD12	nc|ENSG00000100997|Q8N2K0-3|ABHD12	nc|ENSG00000100997|Q8N2K0-3|ABHD12	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.33154296875	2	529.329476	1056.6444	-0.90205	-0.00047748	-2.0406	-0.0010802	-2.9427	-0.0015577	529.3283760389373	58.003	1.3575	54.658	54.444	55.802	-3.3449					56	26	3	0	0	0	0.46377	1	3800	3800		45.952	1.5748	1	216110			61582	2132	50802	50850	67535	67535					0.11834318847832037
VPGADLRQV	9	Unmodified	_VPGADLRQV_					0	0	0		ENST00000475650.1_1_16:30370373-30370970:-|nuORF	ENST00000475650.1_1_16:30370373-30370970:-|nuORF	ENST00000475650.1_1_16:30370373-30370970:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	477.77203369140625	2	477.771991	953.529429	-1.0546	-0.00050385	1.2213	0.00058348	0.16667	7.9631E-05	477.77244512780453	56.054	1.0897	53.25	52.879	53.969	-2.804					32	21	2	0	0	0	0.37135	1	3930	3930		54.776	8.8041	1	199600			61583	12450	50803	50851	67536	67536					0.05080589646047429
VPGAGGGG	8	Unmodified	_VPGAGGGG_					0	0	0			REV__ENST00000411694.1_1_21:45578646-45579129:-|nuORF	REV__ENST00000411694.1_1_21:45578646-45579129:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.31689453125	1	571.283451	570.276175	0.90775	0.00051858	3.4431	0.001967	4.3508	0.0024856	571.2842938396835	123.78	0.49563	123.78	123.56	124.06	0					15	10	3	0	0	0	0.028476	1	14269	14269		10.185	0	1	48573	+		61584	18755	50804	50852	67537	67537					-0.026152180135568415
VPGARREV	8	Unmodified	_VPGARREV_					0	0	0		ENSG00000163013|ENST00000520530|FBXO41	ENSG00000163013|ENST00000520530|FBXO41	ENSG00000163013|ENST00000520530|FBXO41	MULTI-MSMS	OvCa9_classI_Rep4_	4	442.2592468261719	2	442.259051	882.503549	0.037965	1.679E-05	-0.16544	-7.3169E-05	-0.12748	-5.6379E-05	442.2588141194549	38.55	1.6359	35.623	35.255	36.891	-2.9264					67	32	3	0	0	0	0.71369	1	1516	1516		40.573	3.4135	1	275170			61585	6255	50805	50853	67538	67538					0.05759740194423557
VPGAYTGFATL	11	Unmodified	_VPGAYTGFATL_					0	0	0			REV__nc|ENSG00000174227|Q5H8A4-3|PIGG	REV__nc|ENSG00000174227|Q5H8A4-3|PIGG	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.78759765625	2	548.787307	1095.56006	0.69367	0.00038068	0.75851	0.00041626	1.4522	0.00079694	548.787840350563	35.594	1.9958	32.745	32.391	34.386	-2.849					120	39	4	0	0	0	0.68684	1	1219	1219		34.173	8.5985	1	883440	+		61586	21817	50806	50854	67539	67539					0.01610323240447542
VPGENGAPGPM	11	Unmodified	_VPGENGAPGPM_					0	0	0		CON__P04258	CON__P04258	CON__P04258	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.2607421875	2	513.239667	1024.46478	0.016232	8.3308E-06	-3.4278	-0.0017593	-3.4116	-0.001751	513.2376288447589	57.014	0.81409	53.669	53.324	54.138	-3.3449					23	15	2	0	0	0	0.025329	1	3650	3650		27.882	10.517	1	19053		+	61587	619	50807	50855	67540	67540					-0.04647353222264883
VPGEVGRL	8	Unmodified	_VPGEVGRL_					0	0	0			REV__ENST00000244745.3_2_6:21594483-21594732:+|nuORF	REV__ENST00000244745.3_2_6:21594483-21594732:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	413.2276611328125	2	413.742702	825.470852	0.60718	0.00025122	-0.73343	-0.00030345	-0.12625	-5.2235E-05	413.74230605703224	59.615	1.4774	56.223	55.805	57.282	-3.392					49	29	2	0	0	0	0.028476	1	4029	4029		38.806	0	1	393510	+		61588	23831	50808	50856	67541	67541					0.05113533071573784
VPGFLRFSFS	10	Unmodified	_VPGFLRFSFS_					0	0	0			REV__ENST00000264716.8_1_2:28615973-28616156:+|nuORF	REV__ENST00000264716.8_1_2:28615973-28616156:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	578.8108520507812	2	578.811116	1155.60768	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.487	1	59.029	58.529	59.529	-3.4577								0	0	0	0.14803	1	4343	4343		49.442	8.0149	1		+		61589	24021	50809	50857	67542	67542					0.03610022231259791
VPGHRKGG	8	Unmodified	_VPGHRKGG_					0	0	0		ENST00000456159.1_1_7:116312547-116335818:+|nuORF	ENST00000456159.1_1_7:116312547-116335818:+|nuORF	ENST00000456159.1_1_7:116312547-116335818:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	404.2333679199219	2	404.232836	806.45112	1.3505	0.00054594	-1.1916	-0.00048169	0.15893	6.4246E-05	404.23224424215823	134.98	1.1763	134.75	134.34	135.52	-0.22696					59	23	3	0	0	0	0.74595	1	13374	13374		14.664	2.4572	1	117390			61590	12108	50810	50858	67543	67543					0.040152018514731935
VPGINPSFVF	10	Unmodified	_VPGINPSFVF_					0	0	0		nc|ENSG00000103197|P49815-7|TSC2;nc|ENSG00000103197|P49815-6|TSC2;nc|ENSG00000103197|P49815-5|TSC2;nc|ENSG00000103197|P49815-3|TSC2;nc|ENSG00000103197|P49815-2|TSC2;nc|ENSG00000103197|P49815-4|TSC2;ENSG00000103197|ENST00000219476|TSC2;ENST00000569930.1_1_16:2133412-2138608:+|nuORF;ENST00000497886.5_1_16:2128976-2136835:+|nuORF	nc|ENSG00000103197|P49815-7|TSC2	nc|ENSG00000103197|P49815-7|TSC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.7892456054688	2	538.792392	1075.57023	-2.7556	-0.0014847	-3.9358	-0.0021206	-6.6913	-0.0036052	538.7899651166348	49.263	1.3523	46.121	45.78	47.132	-3.1416					54	25	4	0	0	0	0.62299	1	2764	2764		39.253	2.0937	1	384250			61591	2293	50811	50859	67544	67544					0.035469309656718906
VPGKVSPSPK	10	Unmodified	_VPGKVSPSPK_					0	0	0		ENST00000311601.5_1_5:171764580-171764949:-|nuORF	ENST00000311601.5_1_5:171764580-171764949:-|nuORF	ENST00000311601.5_1_5:171764580-171764949:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.7716979980469	2	498.297842	994.581131	-0.41224	-0.00020542	-0.097048	-4.8359E-05	-0.50929	-0.00025378	498.29758051571633	39.495	1.1035	36.569	36.346	37.449	-2.9264					47	21	3	0	0	0	0.027056	1	1607	1607		20.947	0	1	199960			61592	10300	50812	50860	67545	67545					0.08362333339948691
VPGKVSPSPK	10	Unmodified	_VPGKVSPSPK_					0	0	0		ENST00000311601.5_1_5:171764580-171764949:-|nuORF	ENST00000311601.5_1_5:171764580-171764949:-|nuORF	ENST00000311601.5_1_5:171764580-171764949:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	498.297842	994.581131	-0.95111	-0.00047394	0.62989	0.00031387	-0.32122	-0.00016006	498.29798072122185	39.275	0.64234	36.566	36.36	37.002	-2.7097	-0.001709	0.00039692	NaN	20.947	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34909			61593	10300	50812	50860							0.08362333339948691
VPGLPVHIAPF	11	Unmodified	_VPGLPVHIAPF_					0	0	0		ENST00000490768.1_1_1:161136541-161137045:+|nuORF	ENST00000490768.1_1_1:161136541-161137045:+|nuORF	ENST00000490768.1_1_1:161136541-161137045:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	573.8157348632812	2	573.837134	1145.65972	-1.6633	-0.00095447	-0.12279	-7.0464E-05	-1.7861	-0.0010249	573.8373326274691	60.646	1.6238	57.876	56.933	58.557	-2.7702					63	30	3	0	0	0	0.025902	1	4373	4373		24.203	12.692	1	53793			61594	12705	50813	50861	67546	67546					0.09271185645025071
VPGLPVHIAPF	11	Unmodified	_VPGLPVHIAPF_					0	0	0		ENST00000490768.1_1_1:161136541-161137045:+|nuORF	ENST00000490768.1_1_1:161136541-161137045:+|nuORF	ENST00000490768.1_1_1:161136541-161137045:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	573.837134	1145.65972	-0.18277	-0.00010488	-1.7769	-0.0010197	-1.9597	-0.0011245	573.8361594276587	61.444	0.90151	57.987	57.717	58.618	-3.4577	0.055375	-0.00041438	NaN	24.203	34	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128700			61595	12705	50813	50861							0.09271185645025071
VPGLRRGEHL	10	Unmodified	_VPGLRRGEHL_					0	0	0			REV__nc|ENSG00000168477|P22105-1|TNXB	REV__nc|ENSG00000168477|P22105-1|TNXB	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3294677734375	2	567.330539	1132.64652	-2.3399	-0.0013275	0.99796	0.00056617	-1.3419	-0.00076131	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.72319	1	14507	14507		27.882	4.8398	1	241060	+		61596	21378	50814	50862	67547	67547					0.0855074758567298
VPGLSGALLK	10	Unmodified	_VPGLSGALLK_					0	0	0			REV__ENST00000465407.5_1_10:46168161-46168209:-|nuORF	REV__ENST00000465407.5_1_10:46168161-46168209:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.2828674316406	2	477.80276	953.590967	-0.20418	-9.7559E-05	-0.85658	-0.00040928	-1.0608	-0.00050684	477.8024154464574	82.65	0.8783	79.967	79.733	80.612	-2.683					24	17	2	0	0	0	0.026734	1	6871	6871		39.253	8.7492	1	58823	+		61597	26168	50815	50863	67548	67548					0.11231521345337114
VPGNLRSVD	9	Unmodified	_VPGNLRSVD_					0	0	0			REV__nc|ENSG00000144278|Q8IUC8-3|GALNT13	REV__nc|ENSG00000144278|Q8IUC8-3|GALNT13	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.76263427734375	2	478.761623	955.508694	-0.73243	-0.00035066	0.24325	0.00011646	-0.48918	-0.0002342	478.7617239946443	53.641	1.6889	50.393	50.006	51.695	-3.2474					89	32	5	0	0	0	0.31747	1	3319	3319		60.972	9.6365	1	2637300	+		61598	19898	50816	50864	67549	67549					0.029159992663721823
VPGNVLVIWA	10	Unmodified	_VPGNVLVIWA_					0	0	0		nc|ENSG00000163485|P30542-2|ADORA1;ENSG00000163485|ENST00000337894|ADORA1	nc|ENSG00000163485|P30542-2|ADORA1	nc|ENSG00000163485|P30542-2|ADORA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.7913208007812	2	534.316035	1066.61752	0.71243	0.00038066	-2.5686	-0.0013724	-1.8561	-0.00099177	534.3145100341965	81.322	0.53157	81.322	81.162	81.694	0					27	12	3	0	0	0	0.026939	1	8417	8417		24.203	0	1	506150			61599	6315	50817	50865	67550	67550					0.08687210236666942
VPGPAGHRAPH	11	Unmodified	_VPGPAGHRAPH_					0	0	0		ENST00000314256.11_1_17:73490738-73490822:+|nuORF;ENST00000585105.5_1_17:73489582-73490822:+|nuORF	ENST00000314256.11_1_17:73490738-73490822:+|nuORF	ENST00000314256.11_1_17:73490738-73490822:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	548.2953491210938	2	548.293956	1094.57336	-1.4493	-0.00079464	4.0403	0.0022153	2.591	0.0014206	548.2961982412694	34.285	4.3001	31.575	31.119	35.419	-2.7097					197	86	6	0	0	0	0.69081	1	1329	1329		32.812	2.3088	1	2359300			61600	10320	50818	50866	67551	67551					0.02985618863021955
VPGPCPEGLVQ	11	Unmodified	_VPGPCPEGLVQ_					0	0	0		ENST00000593539.1_1_19:53747022-53747208:-|nuORF	ENST00000593539.1_1_19:53747022-53747208:-|nuORF	ENST00000593539.1_1_19:53747022-53747208:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	548.2892456054688	2	548.278792	1094.54303	-0.81622	-0.00044751	3.6973	0.0020272	2.8811	0.0015796	548.2806213702721	50.568	0.61718	50.568	50.332	50.949	0					32	13	3	0	0	0	0.56391	1	3851	3851		47.96	3.8427	1	1202100			61601	14155	50819	50867	67552	67552					-0.00045920637035123946
VPGPRRSGA	9	Unmodified	_VPGPRRSGA_					0	0	0		ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	ENSG00000125304|ENST00000376387|TM9SF2	MULTI-MSMS	OvCa9_classI_Rep2	2	448.75689697265625	2	448.756675	895.498798	2.4907	0.0011177	-2.4567	-0.0011025	0.033966	1.5243E-05	448.75546213583186	31.682	1.1373	28.972	28.74	29.877	-2.7097					50	22	3	0	0	0	0.50149	1	983	983		42.396	11.892	1	154360			61602	3697	50820	50868	67553	67553					0.046868560516600155
VPGTQPLL	8	Unmodified	_VPGTQPLL_					0	0	0		ENST00000533209.5_1_1:54708906-54792004:-|nuORF;ENST00000326956.11_1_1:54692806-54822351:-|nuORF;nc|ENSG00000157216|Q9BWW4-2|SSBP3;nc|ENSG00000157216|Q9BWW4-3|SSBP3;ENSG00000157216|ENST00000610401|SSBP3	ENST00000533209.5_1_1:54708906-54792004:-|nuORF	ENST00000533209.5_1_1:54708906-54792004:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	412.74566650390625	2	412.747453	823.480354	0.75275	0.0003107	-3.7611	-0.0015524	-3.0083	-0.0012417	412.74581316945023	134.99	1.618	134.76	134.29	135.91	-0.22696					65	32	3	0	0	0	0.72922	1	13398	13398		37.028	0	1	284470			61603	5884	50821	50869	67554	67554					0.06155301357091503
VPGTRRPN	8	Unmodified	_VPGTRRPN_					0	0	0			REV__ENST00000356016.7_1_10:98592747-98593206:+|nuORF	REV__ENST00000356016.7_1_10:98592747-98593206:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	448.7564697265625	2	448.756675	895.498798	2.4907	0.0011177	-2.4567	-0.0011025	0.033966	1.5243E-05	448.75546213583186	31.682	1.1373	28.972	28.74	29.877	-2.7097					50	22	3	0	0	0	0.69415	1	995	995		44.531	3.9584	1	154360	+		61604	24759	50822	50870	67555	67555					0.046868560516600155
VPGVPGAVLTL	11	Unmodified	_VPGVPGAVLTL_					0	0	0		ENSG00000011201|ENST00000262648|ANOS1	ENSG00000011201|ENST00000262648|ANOS1	ENSG00000011201|ENST00000262648|ANOS1	MULTI-MSMS	OvCa9_classI_Rep2	2	511.81427001953125	2	511.815867	1021.61718	-1.0737	-0.00054956	-1.8225	-0.00093277	-2.8962	-0.0014823	511.81478887315143	50.018	2.3782	47.224	46.637	49.015	-2.794					105	47	4	0	0	0	0.72244	1	3198	3198		21.96	1.013	1	277830			61605	957	50823	50871	67556	67556					0.10723790516806275
VPHAIAFCLKE	11	Unmodified	_VPHAIAFCLKE_					0	0	0		nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3	nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3	nc|ENSG00000076826|Q9P1Y5-2|CAMSAP3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	409.8814697265625	3	409.889998	1226.64816	0.46	0.00018855	0.67544	0.00027686	1.1354	0.0004654	409.8903539182921	52.43	0.50561	49.222	49.145	49.651	-3.208					10	9	2	0	0	0	0.025239	1	3158	3158		28.577	0	1	17739			61606	14893	50824	50872	67557	67557					0.04390620559343006
VPHALLTKLD	10	Unmodified	_VPHALLTKLD_					0	0	0			REV__ENSG00000148677|ENST00000371697|ANKRD1	REV__ENSG00000148677|ENST00000371697|ANKRD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.825439453125	2	553.832049	1105.64954	-0.20431	-0.00011315	-0.93142	-0.00051585	-1.1357	-0.000629	553.8316174776917	101.69	1.1728	99.419	99.066	100.24	-2.2665					40	22	3	0	0	0	0.026994	1	9186	9186		25.574	6.4705	1	40987	+		61607	20120	50825	50873	67558	67558					0.10094577919790026
VPHETLPAPY	10	Unmodified	_VPHETLPAPY_					0	0	0		ENST00000483071.1_1_3:50327227-50327497:-|nuORF	ENST00000483071.1_1_3:50327227-50327497:-|nuORF	ENST00000483071.1_1_3:50327227-50327497:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.306396484375	2	562.292756	1122.57096	3.0641	0.0017229	-1.0596	-0.00059581	2.0044	0.0011271	562.2914027263027	107.99	0.42238	107.99	107.86	108.28	0					13	9	2	0	0	0	0.027021	1	12192	12192		21.96	4.5949	1	103900			61608	12582	50826	50874	67559	67559					0.014577256147049411
VPHGHITSL	9	Unmodified	_VPHGHITSL_					0	0	0		ENST00000477882.1_1_X:153197755-153198123:-|nuORF;ENST00000466877.5_1_X:153197755-153200402:-|nuORF;ENST00000494813.5_1_X:153187159-153200402:-|nuORF;nc|ENSG00000102030|P41227-2|NAA10;ENSG00000156269|ENST00000286794|NAA11;ENSG00000102030|ENST00000464845|NAA10	ENST00000477882.1_1_X:153197755-153198123:-|nuORF	ENST00000477882.1_1_X:153197755-153198123:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	480.7669372558594	2	480.766709	959.518865	-1.3373	-0.00064294	1.1754	0.00056509	-0.16193	-7.7853E-05	480.7671509238754	54.147	1.2965	51.333	50.825	52.122	-2.8139					48	25	2	0	0	0	0.27546	1	3720	3720		65.803	2.4969	1	272510			61609	2217	50827	50875	67560	67560					0.03748606991609904
VPHGHITSL	9	Unmodified	_VPHGHITSL_					0	0	0		ENST00000477882.1_1_X:153197755-153198123:-|nuORF;ENST00000466877.5_1_X:153197755-153200402:-|nuORF;ENST00000494813.5_1_X:153187159-153200402:-|nuORF;nc|ENSG00000102030|P41227-2|NAA10;ENSG00000156269|ENST00000286794|NAA11;ENSG00000102030|ENST00000464845|NAA10	ENST00000477882.1_1_X:153197755-153198123:-|nuORF	ENST00000477882.1_1_X:153197755-153198123:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.76824951171875	2	480.766709	959.518865	-0.97225	-0.00046743	0.49361	0.00023731	-0.47864	-0.00023011	480.76685826741743	54.507	1.0255	51.259	50.927	51.953	-3.2474					37	19	2	0	0	0	0.14739	1	3392	3392		85.359	0	1	768700			61610	2217	50827	50875	67561	67561					0.03748606991609904
VPHGQRPKHQL	11	Unmodified	_VPHGQRPKHQL_					0	0	0			REV__ENST00000538872.5_1_12:248427-266301:+|nuORF	REV__ENST00000538872.5_1_12:248427-266301:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	433.171875	3	432.914305	1295.72109	2.701	0.0011693	-0.27897	-0.00012077	2.422	0.0010485	432.91414623285056	57.589	0.53754	54.463	54.157	54.694	-3.1264					18	13	2	0	0	0	0.026145	1	1738	1738		23.378	3.3474	1	11009	+		61611	27330	50828	50876	67562	67562					0.08505510397026228
VPHKIITHL	9	Unmodified	_VPHKIITHL_					0	0	0		nc|ENSG00000173171|Q13505-3|MTX1;ENSG00000173171|ENST00000368376|MTX1;ENST00000440904.1_1_1:155200937-155204113:+|nuORF;nc|ENSG00000173171|Q13505-2|MTX1;ENST00000481771.5_1_1:155179042-155180448:+|nuORF	nc|ENSG00000173171|Q13505-3|MTX1	nc|ENSG00000173171|Q13505-3|MTX1	MULTI-MSMS	OvCa9_classI_Rep2	2	529.3295288085938	2	529.329476	1056.6444	-1.2839	-0.00067959	-0.45447	-0.00024057	-1.7383	-0.00092016	529.3289487726382	57.146	1.093	54.354	54.08	55.173	-2.792					49	21	4	0	0	0	0.46356	2	4068	4063;4068		45.972	13.16	1	235690			61612	7355	50829	50877	67563;67564	67564					0.11834318847832037
VPHPAALDLI	10	Unmodified	_VPHPAALDLI_					0	0	0		tr|A0A7D6ZKB9|A0A7D6ZKB9_9CLOTBacteriocinimmunityproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12100PE=3SV=1	tr|A0A7D6ZKB9|A0A7D6ZKB9_9CLOTBacteriocinimmunityproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12100PE=3SV=1	tr|A0A7D6ZKB9|A0A7D6ZKB9_9CLOTBacteriocinimmunityproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12100PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3045654296875	2	523.305667	1044.59678	-1.1964	-0.0006261	0.3713	0.0001943	-0.82515	-0.0004318	523.3057889023812	118.4	1.191	118.25	117.94	119.13	-0.14755					45	23	3	0	0	0	0.58282	1	11364	11364		44.117	5.3107	1	179960			61613	35662	50830	50878	67565	67565					0.0762661985700106
VPHPAALDLI	10	Unmodified	_VPHPAALDLI_					0	0	0		tr|A0A7D6ZKB9|A0A7D6ZKB9_9CLOTBacteriocinimmunityproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12100PE=3SV=1	tr|A0A7D6ZKB9|A0A7D6ZKB9_9CLOTBacteriocinimmunityproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12100PE=3SV=1	tr|A0A7D6ZKB9|A0A7D6ZKB9_9CLOTBacteriocinimmunityproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12100PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	523.304931640625	2	523.305667	1044.59678	0.28708	0.00015023	0.36831	0.00019274	0.65539	0.00034297	523.306234509621	119.31	1.5798	118.28	117.93	119.51	-1.0271					59	31	3	0	0	0	0.55145	1	9050	9050		47.916	0.25827	1	208980			61614	35662	50830	50878	67566	67566					0.0762661985700106
VPHVFLLF	8	Unmodified	_VPHVFLLF_					0	0	0		ABCC8|p.I1235Dfs*20|1|0.2|ENSG00000006071|chr11:17398359-17398389|TGTTGGCAGCTGTGAGGAAGAGGGAAGCAAT/-|frameshift_variant;ENSG00000006071|ENST00000389817|ABCC8;nc|ENSG00000006071|Q09428-2|ABCC8;nc|ENSG00000006071|Q09428-3|ABCC8;ENSG00000069431|ENST00000261200|ABCC9;ABCC9|p.D1415Gfs*2|1|0.26|ENSG00000069431|chr12:21809923-21809924|-/C|frameshift_variant;nc|ENSG00000069431|O60706|ABCC9	ABCC8|p.I1235Dfs*20|1|0.2|ENSG00000006071|chr11:17398359-17398389|TGTTGGCAGCTGTGAGGAAGAGGGAAGCAAT/-|frameshift_variant;ENSG00000069431|ENST00000261200|ABCC9	ENSG00000069431|ENST00000261200|ABCC9	MULTI-MSMS	OvCa9_classI_Rep2	2	486.2912902832031	2	486.289288	970.564024	-0.28888	-0.00014048	3.221	0.0015663	2.9321	0.0014258	486.2907334904176	46.526	1.9813	43.817	43.349	45.331	-2.7097					83	39	4	0	0	0	0.7363	1	2795	2795		33.493	2.9893	1	653600			61615	1409;5	50831	50879	67567	67567					0.07756457524817506
VPIDEESTKKL	11	Unmodified	_VPIDEESTKKL_					0	0	0		tr|A0A7D7ABP1|A0A7D7ABP1_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16140PE=4SV=1	tr|A0A7D7ABP1|A0A7D7ABP1_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16140PE=4SV=1	tr|A0A7D7ABP1|A0A7D7ABP1_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16140PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	420.2355041503906	3	420.234487	1257.68163	-0.48401	-0.0002034	0.9463	0.00039767	0.46229	0.00019427	420.2348652404624	92.172	2.6968	90.147	89.584	92.281	-2.0241					147	54	4	0	0	0	0.66495	1	5832	5832		38.754	0.94209	1	1866100			61616	36217	50832	50880	67568	67568					0.06309900812289015
VPIDVFTTDTV	11	Unmodified	_VPIDVFTTDTV_					0	0	0			REV__ENSG00000197953|ENST00000356517|AADACL2	REV__ENSG00000197953|ENST00000356517|AADACL2	MULTI-SECPEP	OvCa9_classI_Rep2	2	402.2470703125	3	402.879933	1205.61797	1.1948	0.00048134	4.2758	0.0017226	5.4705	0.002204	403.2164553558336	59.42	0.36802	56.64	56.399	56.767	-2.7801					8	6	2	0	0	0	0.02595	1	4333	4333		26.75	6.7192	1	5241.1	+		61617	22971	50833	50881	67569	67569					0.023385403751717604
VPIEHVGGEV	10	Unmodified	_VPIEHVGGEV_					0	0	0		tr|A0A553SP60|A0A553SP60_NIACIRqc2homologRqcHOS=NialliacirculansOX=1397GN=rqcHPE=3SV=1	tr|A0A553SP60|A0A553SP60_NIACIRqc2homologRqcHOS=NialliacirculansOX=1397GN=rqcHPE=3SV=1	tr|A0A553SP60|A0A553SP60_NIACIRqc2homologRqcHOS=NialliacirculansOX=1397GN=rqcHPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.2945556640625	2	518.277106	1034.53966	0.66562	0.00034498	0.78808	0.00040844	1.4537	0.00075342	518.2770443325263	92.557	0.26289	91.389	91.235	91.498	-1.168					7	4	2	0	0	0	0.026688	1	8241	8241		58.782	3.2778	1	17799			61618	34005	50834	50882	67570	67570					0.023771525806068894
VPIEHVGGEV	10	Unmodified	_VPIEHVGGEV_					0	0	0		tr|A0A553SP60|A0A553SP60_NIACIRqc2homologRqcHOS=NialliacirculansOX=1397GN=rqcHPE=3SV=1	tr|A0A553SP60|A0A553SP60_NIACIRqc2homologRqcHOS=NialliacirculansOX=1397GN=rqcHPE=3SV=1	tr|A0A553SP60|A0A553SP60_NIACIRqc2homologRqcHOS=NialliacirculansOX=1397GN=rqcHPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.2958374023438	2	518.277106	1034.53966	-0.78741	-0.0004081	-1.7779	-0.00092147	-2.5654	-0.0013296	518.2765066155816	93.413	0.45198	91.452	91.328	91.78	-1.9617					12	8	2	0	0	0	0.026802	1	5980	5980		51.335	13.524	1	43845			61619	34005	50834	50882	67571	67571					0.023771525806068894
VPIEHVGGEV	10	Unmodified	_VPIEHVGGEV_					0	0	0		tr|A0A553SP60|A0A553SP60_NIACIRqc2homologRqcHOS=NialliacirculansOX=1397GN=rqcHPE=3SV=1	tr|A0A553SP60|A0A553SP60_NIACIRqc2homologRqcHOS=NialliacirculansOX=1397GN=rqcHPE=3SV=1	tr|A0A553SP60|A0A553SP60_NIACIRqc2homologRqcHOS=NialliacirculansOX=1397GN=rqcHPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.2958984375	2	518.277106	1034.53966	-0.75763	-0.00039266	-0.24379	-0.00012635	-1.0014	-0.00051901	518.2771657870722	93.926	0.41781	91.419	91.257	91.675	-2.5072					12	8	2	0	0	0	0.02661	1	8234	8234		58.782	12.83	1	43062			61620	34005	50834	50882	67572	67572					0.023771525806068894
VPIGELMGLR	10	Unmodified	_VPIGELMGLR_					0	0	0			REV__tr|A0A553SL94|A0A553SL94_NIACIPeptidaseOS=NialliacirculansOX=1397GN=CEQ21_20195PE=4SV=1	REV__tr|A0A553SL94|A0A553SL94_NIACIPeptidaseOS=NialliacirculansOX=1397GN=CEQ21_20195PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	543.2928466796875	2	542.812802	1083.61105	-0.57004	-0.00030943	-2.8061	-0.0015232	-3.3761	-0.0018326	542.8111397166006	82.049	0.79962	79.753	79.484	80.283	-2.2963					22	14	2	0	0	0	0.026582	1	4623	4623		71.296	30.518	1	75454	+		61621	30202	50835	50883	67573	67573					0.07258949013635174
VPIGELMGLR	10	Unmodified	_VPIGELMGLR_					0	0	0			REV__tr|A0A553SL94|A0A553SL94_NIACIPeptidaseOS=NialliacirculansOX=1397GN=CEQ21_20195PE=4SV=1	REV__tr|A0A553SL94|A0A553SL94_NIACIPeptidaseOS=NialliacirculansOX=1397GN=CEQ21_20195PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.812802	1083.61105	-0.12676	-6.8809E-05	-1.5439	-0.00083805	-1.6707	-0.00090686	542.8110060785004	81.308	1.1182	79.659	79.164	80.282	-1.6485	0.021483	0.0012701	NaN	66.429	28	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36226	+		61622	30202	50835	50883							0.07258949013635174
VPIGELMGLR	10	Unmodified	_VPIGELMGLR_					0	0	0			REV__tr|A0A553SL94|A0A553SL94_NIACIPeptidaseOS=NialliacirculansOX=1397GN=CEQ21_20195PE=4SV=1	REV__tr|A0A553SL94|A0A553SL94_NIACIPeptidaseOS=NialliacirculansOX=1397GN=CEQ21_20195PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	542.812802	1083.61105	-1.3122	-0.00071226	-3.2408	-0.0017591	-4.5529	-0.0024714	542.8108092975145	82.184	0.67724	79.501	79.204	79.881	-2.683	-0.13673	-0.00057209	NaN	66.429	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43247	+		61623	30202	50835	50883							0.07258949013635174
VPIGFVVIG	9	Unmodified	_VPIGFVVIG_					0	0	0		tr|A0A7D6VRM2|A0A7D6VRM2_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_20190PE=4SV=1	tr|A0A7D6VRM2|A0A7D6VRM2_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_20190PE=4SV=1	tr|A0A7D6VRM2|A0A7D6VRM2_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_20190PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	450.784423828125	2	450.781296	899.54804	4.7325	0.0021333	3.2092	0.0014466	7.9417	0.00358	450.78259742847797	27.516	0.58479	24.806	24.66	25.245	-2.7097					22	13	2	0	0	0	0.68641	1	493	493		21.702	7.0382	1	50831			61624	34943	50836	50884	67574	67574					0.09424751287895106
VPIIQKLF	8	Unmodified	_VPIIQKLF_					0	0	0			REV__tr|A0A7D6VPJ3|A0A7D6VPJ3_9CLOTMannonatedehydrataseOS=ClostridiumintestinaleOX=36845GN=uxuAPE=3SV=1	REV__tr|A0A7D6VPJ3|A0A7D6VPJ3_9CLOTMannonatedehydrataseOS=ClostridiumintestinaleOX=36845GN=uxuAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.8028259277344	2	479.310221	956.605889	-1.4409	-0.00069064	1.11	0.00053204	-0.33088	-0.00015859	479.31054736806004	125.13	0.62234	123.73	123.54	124.16	-1.3908					13	11	2	0	0	0	0.028476	1	11860	11860		28.254	8.8943	1	14658	+		61625	31251	50837	50885	67575	67575					0.12585013213333696
VPIIQKLF	8	Unmodified	_VPIIQKLF_					0	0	0			REV__tr|A0A7D6VPJ3|A0A7D6VPJ3_9CLOTMannonatedehydrataseOS=ClostridiumintestinaleOX=36845GN=uxuAPE=3SV=1	REV__tr|A0A7D6VPJ3|A0A7D6VPJ3_9CLOTMannonatedehydrataseOS=ClostridiumintestinaleOX=36845GN=uxuAPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	479.310221	956.605889	1.8988	0.00091013	-1.6915	-0.00081074	0.20736	9.939E-05	479.30912286570504	124.73	0.52366	123.68	123.58	124.11	-1.0519	-0.028746	-0.001363	NaN	28.254	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13965	+		61626	31251	50837	50885							0.12585013213333696
VPIITIGTI	9	Unmodified	_VPIITIGTI_					0	0	0			REV__tr|A0A553SK61|A0A553SK61_NIACIendopeptidaseLaOS=NialliacirculansOX=1397GN=lonBPE=3SV=1	REV__tr|A0A553SK61|A0A553SK61_NIACIendopeptidaseLaOS=NialliacirculansOX=1397GN=lonBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.7982177734375	2	463.799686	925.584819	-1.4154	-0.00065646	-2.4017	-0.0011139	-3.8171	-0.0017704	463.7985594679424	71.828	2.2794	68.371	68.074	70.354	-3.4563					134	46	4	0	0	0	0.59983	1	5539	5539		31.955	4.0726	1	2935000	+		61627	30083	50838	50886	67576	67576					0.11905003113827206
VPIIWVPLV	9	Unmodified	_VPIIWVPLV_					0	0	0		ENSG00000103089|ENST00000219368|FA2H	ENSG00000103089|ENST00000219368|FA2H	ENSG00000103089|ENST00000219368|FA2H	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.2962036132812	2	518.333696	1034.65284	-0.55908	-0.00028979	2.8933	0.0014997	2.3342	0.0012099	518.3353142022263	94.453	0.24731	91.984	91.762	92.01	-2.4685					5	4	2	0	0	0	0.02744	1	8258	8258		60.404	11.193	1	7669.9			61628	2281	50839	50887	67577	67577					0.13689872764462052
VPIKVLHEAE	10	Unmodified	_VPIKVLHEAE_					0	0	0		ENSG00000100028|ENST00000215829|SNRPD3;nc|ENSG00000286070|P62318-2|SNRPD3;ENST00000468770.1_1_22:24953642-24953888:+|nuORF	ENSG00000100028|ENST00000215829|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.8484497070312	2	567.829506	1133.64446	0.14859	8.4373E-05	-4.0353	-0.0022914	-3.8867	-0.002207	567.8267567908908	71.659	0.78815	69.057	68.932	69.72	-2.6023					19	15	2	0	0	0	0.027021	1	3414	3414		29.15	14.285	1	38999			61629	1995	50840	50888	67578	67578					0.08298274057165145
VPIPQLAS	8	Unmodified	_VPIPQLAS_					0	0	0			REV__nc|ENSG00000204842|Q99700-5|ATXN2	REV__nc|ENSG00000204842|Q99700-5|ATXN2	MULTI-MSMS	OvCa9_classI_Rep2	2	412.74578857421875	2	412.747453	823.480354	0.75275	0.0003107	-3.7611	-0.0015524	-3.0083	-0.0012417	412.74581316945023	134.99	1.618	134.76	134.29	135.91	-0.22696					65	32	3	0	0	0	0.75915	1	13377	13377		20.482	0	1	284470	+		61630	23187	50841	50889	67579	67579					0.06155301357080134
VPISGWIVAR	10	Unmodified	_VPISGWIVAR_					0	0	0		tr|A0A7D6VQ35|A0A7D6VQ35_9CLOTGlycosyltransferasefamily39proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18675PE=4SV=1	tr|A0A7D6VQ35|A0A7D6VQ35_9CLOTGlycosyltransferasefamily39proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18675PE=4SV=1	tr|A0A7D6VQ35|A0A7D6VQ35_9CLOTGlycosyltransferasefamily39proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18675PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	549.3235473632812	2	549.326934	1096.63931	-1.9795	-0.0010874	-1.9759	-0.0010854	-3.9555	-0.0021728	549.3257656556187	35.686	1.1428	32.977	32.75	33.893	-2.7097					64	22	4	0	0	0	0.65434	1	1467	1467		35.618	1.6967	1	371650			61631	34818	50842	50890	67580	67580					0.09486014985213842
VPISNLQILPG	11	Unmodified	_VPISNLQILPG_					0	0	0		ARID2|p.S1616Rfs*20|1|0.08|ENSG00000189079|chr12:45860874-45860875|-/ACACAAATACTTAACCATTGTGTTACGGT|frameshift_variant;nc|ENSG00000189079|Q68CP9-3|ARID2;ENSG00000189079|ENST00000334344|ARID2	ARID2|p.S1616Rfs*20|1|0.08|ENSG00000189079|chr12:45860874-45860875|-/ACACAAATACTTAACCATTGTGTTACGGT|frameshift_variant	ARID2|p.S1616Rfs*20|1|0.08|ENSG00000189079|chr12:45860874-45860875|-/ACACAAATACTTAACCATTGTGTTACGGT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8435668945312	2	575.845156	1149.67576	-3.1773	-0.0018296	-0.077675	-4.4729E-05	-3.255	-0.0018744	575.8447773729116	141.87	3.8997	140.86	138.96	142.86	-1.0106					243	78	6	0	0	0	0.72466	1	11679	11679		19.997	0.89325	1	129610			61632	115	50843	50891	67581	67581					0.10690847091291289
VPISPEPL	8	Unmodified	_VPISPEPL_					0	0	0		ENST00000477994.1_1_10:104183924-104192326:-|nuORF;ENSG00000107874|ENST00000369937|CUEDC2	ENST00000477994.1_1_10:104183924-104192326:-|nuORF	ENST00000477994.1_1_10:104183924-104192326:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	426.24609375	2	426.247286	850.48002	-0.93249	-0.00039747	-2.0488	-0.0008733	-2.9813	-0.0012708	426.2463036759244	138.33	1.7168	138.1	137.59	139.3	-0.22696					83	34	3	0	0	0	0.75991	1	13852	13852		21.702	0	1	161940			61633	2624	50844	50892	67582	67582					0.04879881637236849
VPITDQHIL	9	Unmodified	_VPITDQHIL_					0	0	0		ENSG00000163874|ENST00000373087|ZC3H12A	ENSG00000163874|ENST00000373087|ZC3H12A	ENSG00000163874|ENST00000373087|ZC3H12A	MULTI-MSMS	OvCa9_classI_Rep2	2	518.2955322265625	2	518.295299	1034.57605	0.55863	0.00028953	-1.1323	-0.00058686	-0.57366	-0.00029732	518.2947779627386	92.589	2.8086	91.421	91.024	93.832	-1.168					161	54	5	0	0	0	0.40667	1	8277	8277		51.335	3.4199	1	5418500			61634	6370	50845	50893	67583	67583					0.060140294773418645
VPIVMVQRP	9	Unmodified	_VPIVMVQRP_					0	0	0			REV__nc|ENSG00000185418|A2RTX5-2|TARS3	REV__nc|ENSG00000185418|A2RTX5-2|TARS3	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.7955932617188	2	519.810062	1037.60557	0.5605	0.00029136	-0.52531	-0.00027306	0.035192	1.8293E-05	520.3111327657581	79.654	0.4679	77.959	77.557	78.025	-1.6951					11	8	2	0	0	0	0.027462	1	6659	6659		12.959	0	1	16149	+		61635	22500	50846	50894	67584	67584					0.08827270221809158
VPKAGKNL	8	Unmodified	_VPKAGKNL_					0	0	0			REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	REV__nc|ENSG00000164190|Q6KC79-2|NIPBL	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.2075500488281	2	413.760895	825.507237	2.983	0.0012342	-0.049051	-2.0295E-05	2.9339	0.0012139	413.76091548794477	80.723	0.4734	80.723	80.354	80.827	0					12	10	2	0	0	0	0.028476	1	8270	8270		35.201	14.719	1	119250	+		61636	20958	50847	50895	67585	67585					0.08750409968274653
VPKIVLEPM	9	Unmodified	_VPKIVLEPM_					0	0	0			REV__tr|A0A7D6VVV8|A0A7D6VVV8_9CLOTDUF262domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06600PE=4SV=1	REV__tr|A0A7D6VVV8|A0A7D6VVV8_9CLOTDUF262domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06600PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	512.8089599609375	2	513.306821	1024.59909	-0.20579	-0.00010563	3.473	0.0017827	3.2672	0.0016771	513.3086432652412	77.976	1.4803	75.159	74.729	76.209	-2.8165					67	29	4	0	0	0	0.53957	1	6233	6233		38.806	4.6336	1	786910	+		61637	31736	50848	50896	67586	67586					0.0877733227043791
VPKKVLRQL	9	Unmodified	_VPKKVLRQL_					0	0	0			REV__ENSG00000142599|ENST00000400908|RERE	REV__ENSG00000142599|ENST00000400908|RERE	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.832763671875	2	540.866226	1079.7179	2.024	0.0010947	-1.5145	-0.00081914	0.50952	0.00027558	540.86552168304	124.45	0.25698	123.42	123.24	123.49	-1.0377					8	4	2	0	0	0	0.027462	1	9634	9634		31.955	0	1	22042	+		61638	19793	50849	50897	67587	67587					0.18122867290298927
VPKLLDLEL	9	Unmodified	_VPKLLDLEL_					0	0	0		tr|A0A553SFD4|A0A553SFD4_NIACIAdeninedeaminaseOS=NialliacirculansOX=1397GN=adePE=3SV=1	tr|A0A553SFD4|A0A553SFD4_NIACIAdeninedeaminaseOS=NialliacirculansOX=1397GN=adePE=3SV=1	tr|A0A553SFD4|A0A553SFD4_NIACIAdeninedeaminaseOS=NialliacirculansOX=1397GN=adePE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3213500976562	2	520.323525	1038.6325	1.6005	0.00083277	-4.2746	-0.0022241	-2.6741	-0.0013914	520.3211025599854	29.328	0.65627	26.619	26.407	27.063	-2.7097					29	13	3	0	0	0	0.53957	1	691	691		38.806	0	1	67532			61639	33028	50850	50898	67588	67588					0.11472657313993295
VPKNFHSMQN	10	Unmodified	_VPKNFHSMQN_					0	0	0		nc|ENSG00000088899|O60299-2|LZTS3;ENSG00000088899|ENST00000337576|LZTS3	nc|ENSG00000088899|O60299-2|LZTS3	nc|ENSG00000088899|O60299-2|LZTS3	MULTI-SECPEP	OvCa99_classI_Rep5	1	600.3321533203125	2	601.292765	1200.57098	-0.032097	-1.93E-05	4.3739	0.00263	4.3418	0.0026107	601.29546296081	73.134	0.24102	73.134	72.954	73.195	0					8	5	2	0	0	0	0.026916	1	7162	7162		31.53	0	1	209250			61640	1798	50851	50899	67589	67589					-0.021285976569288323
VPKPGMLTE	9	Unmodified	_VPKPGMLTE_					0	0	0			REV__ENST00000304032.12_1_2:237036554-237036818:+|nuORF	REV__ENST00000304032.12_1_2:237036554-237036818:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	486.2648620605469	2	486.265153	970.515753	1.1545	0.00056141	-1.3221	-0.0006429	-0.16757	-8.1486E-05	486.26439439503525	61.985	2.2064	58.916	57.872	60.078	-3.0685					97	53	2	0	0	0	0.46377	1	2249	2249		45.952	0	1	48498	+		61641	24273	50852	50900	67590	67590					0.029315958225879513
VPKSGTPQL	9	Unmodified	_VPKSGTPQL_					0	0	0		ENSG00000116977|ENST00000366584|LGALS8;nc|ENSG00000116977|O00214-2|LGALS8;ENST00000366583.6_1_1:236689310-236706138:+|nuORF	ENSG00000116977|ENST00000366584|LGALS8	ENSG00000116977|ENST00000366584|LGALS8	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.77001953125	2	463.768917	925.523281	-0.31118	-0.00014432	0.27402	0.00012708	-0.037165	-1.7236E-05	463.76891380587267	57.494	1.2676	54.15	53.781	55.049	-3.3449					69	24	4	0	0	0	0.045281	3	3740	3730;3740;3753		122.18	31.399	1	601890			61642	3222	50853	50901	67591;67592;67593	67592					0.05754071414526152
VPKTIALTVAH	11	Unmodified	_VPKTIALTVAH_					0	0	0			REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	REV__nc|ENSG00000186472|Q9Y6V0-6|PCLO	MULTI-MSMS	OvCa9_classI_Rep2	2	575.3504638671875	2	575.353148	1148.69174	-5.3555	-0.0030813	1.6434	0.00094551	-3.7121	-0.0021358	575.3541227015148	157.34	0.65527	157.11	156.88	157.53	-0.22696					24	20	2	0	0	0	0.69081	1	16016	16016		32.812	6.1195	1	25583	+		61643	22589	50854	50902	67594	67594					0.1233455332817357
VPKVKRGR	8	Unmodified	_VPKVKRGR_					0	0	0		nc|ENSG00000076108|Q9UIF9-2|BAZ2A;nc|ENSG00000076108|Q9UIF9-3|BAZ2A;ENSG00000076108|ENST00000549884|BAZ2A;nc|ENSG00000076108|Q9UIF9|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	nc|ENSG00000076108|Q9UIF9-2|BAZ2A	MULTI-SECPEP	OvCa9_classI_Rep2	2	470.2961730957031	2	470.314161	938.613768	-0.43392	-0.00020408	-3.417	-0.0016071	-3.8509	-0.0018111	470.312576052318	32.314	0.29738	29.605	29.481	29.778	-2.7097					7	5	2	0	0	0	0.028476	1	1065	1065		12.959	0	1	16402			61644	1550	50855	50903	67595	67595					0.14200585253468034
VPKVYTTL	8	Unmodified	_VPKVYTTL_					0	0	0		ENSG00000118492|ENST00000397944|ADGB;nc|ENSG00000118492|Q8N7X0-2|ADGB	ENSG00000118492|ENST00000397944|ADGB	ENSG00000118492|ENST00000397944|ADGB	MULTI-MSMS	OvCa9_classI_Rep4_	4	460.7748107910156	2	460.776211	919.537869	-0.31989	-0.0001474	-2.7044	-0.0012461	-3.0243	-0.0013935	460.7747904442252	38.902	1.5392	35.976	35.651	37.19	-2.9264					68	30	4	0	0	0	0.69415	2	1546	1546;1556		44.531	9.3304	1	471040			61645	3309	50856	50904	67596;67597	67596					0.07488143562670757
VPKYAHEL	8	Unmodified	_VPKYAHEL_					0	0	0			REV__nc|ENSG00000166889|Q86TB9-2|PATL1	REV__nc|ENSG00000166889|Q86TB9-2|PATL1	MULTI-MSMS	OvCa9_classI_Rep2	2	478.7608337402344	2	478.763635	955.512717	-1.3331	-0.00063822	-3.1793	-0.0015222	-4.5124	-0.0021604	478.76197908544503	53.514	1.6905	50.7	50.231	51.922	-2.8139					84	33	4	0	0	0	0.62934	1	3661	3661		57.811	4.4598	1	447130	+		61646	21232	50857	50905	67598	67598					0.03318088760090632
VPLALLLLSL	10	Unmodified	_VPLALLLLSL_					0	0	0			REV__nc|ENSG00000095917|Q9BZJ3-2|TPSD1	REV__nc|ENSG00000095917|Q9BZJ3-2|TPSD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.7955932617188	2	526.359911	1050.70527	-0.7163	-0.00037703	2.508	0.0013201	1.7917	0.00094307	526.3613450784992	58.934	0.50456	55.542	55.35	55.854	-3.392					12	9	2	0	0	0	0.027302	1	3891	3891		18.324	6.8134	1	15024	+		61647	17298	50858	50906	67599	67599					0.18194411107424457
VPLALLLLSL	10	Unmodified	_VPLALLLLSL_					0	0	0			REV__nc|ENSG00000095917|Q9BZJ3-2|TPSD1	REV__nc|ENSG00000095917|Q9BZJ3-2|TPSD1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	526.359911	1050.70527	-0.65191	-0.00034314	2.769	0.0014575	2.1171	0.0011143	526.3612359566498	58.301	0.55386	55.511	55.275	55.829	-2.79	-0.015472	0.00012667	NaN	12.207	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8988.8	+		61648	17298	50858	50906							0.18194411107424457
VPLALRQQIG	10	Unmodified	_VPLALRQQIG_					0	0	0			REV__ENSG00000154358|ENST00000680850|OBSCN	REV__ENSG00000154358|ENST00000680850|OBSCN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.3231811523438	2	547.837665	1093.66078	-1.2573	-0.00068879	1.8172	0.00099554	0.55993	0.00030675	547.8377329039697	54.913	0.96969	51.666	51.388	52.358	-3.2474					46	18	3	0	0	0	0.027117	1	3466	3466		23.042	1.0826	1	79879	+		61649	20380	50859	50907	67600	67600					0.1176940001391813
VPLFHFIAE	9	Unmodified	_VPLFHFIAE_					0	0	0			REV__tr|A0A7D6VRA6|A0A7D6VRA6_9CLOTPTSsystemtrehalose-specificEIIBCcomponentOS=ClostridiumintestinaleOX=36845GN=trePPE=4SV=1	REV__tr|A0A7D6VRA6|A0A7D6VRA6_9CLOTPTSsystemtrehalose-specificEIIBCcomponentOS=ClostridiumintestinaleOX=36845GN=trePPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.81494140625	2	536.794935	1071.57532	0.04492	2.4113E-05	-3.5765	-0.0019198	-3.5316	-0.0018957	536.7927338651826	105.3	0.30849	105.3	105.13	105.44	0					12	6	2	0	0	0	0.027462	1	11832	11832		33.516	9.3128	1	291310	+		61650	29847	50860	50908	67601	67601					0.04239234828264671
VPLFLVVLV	9	Unmodified	_VPLFLVVLV_					0	0	0		ENST00000260585.11_1_2:26569100-26611935:+|nuORF;ENSG00000138018|ENST00000260585|SELENOI	ENST00000260585.11_1_2:26569100-26611935:+|nuORF	ENST00000260585.11_1_2:26569100-26611935:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	499.8962097167969	2	499.836071	997.65759	-0.51178	-0.0002558	-3.7336	-0.0018662	-4.2454	-0.002122	499.83414556265524	73.802	2.0684	71.315	70.875	72.943	-2.4873					72	41	2	0	0	0	0.027462	1	3585	3585		29.842	4.3914	1	231230			61651	4646	50861	50909	67602	67602					0.15866756907234958
VPLGHKLFLG	10	Unmodified	_VPLGHKLFLG_					0	0	0		sp|P09716|US17_HCMVAUncharacterizedproteinHVLF1OS=Humancytomegalovirus(strainAD169)OX=10360GN=US17PE=3SV=1;sp|F5H9N9|US17_HCMVMProteinUS17OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US17PE=4SV=1	sp|P09716|US17_HCMVAUncharacterizedproteinHVLF1OS=Humancytomegalovirus(strainAD169)OX=10360GN=US17PE=3SV=1	sp|P09716|US17_HCMVAUncharacterizedproteinHVLF1OS=Humancytomegalovirus(strainAD169)OX=10360GN=US17PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.8313598632812	2	540.831852	1079.64915	-2.0025	-0.001083	1.179	0.00063766	-0.82347	-0.00044536	540.8325567076699	124.8	3.4681	123.41	123.02	126.49	-1.3908					189	68	4	0	0	0	0.68695	1	11941	11941		31.955	1.4512	1	9581200			61652	32847	50862	50910	67603	67603					0.11251202990592901
VPLGKWILE	9	Unmodified	_VPLGKWILE_					0	0	0		tr|A0A7D6VSL7|A0A7D6VSL7_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23255PE=4SV=1	tr|A0A7D6VSL7|A0A7D6VSL7_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23255PE=4SV=1	tr|A0A7D6VSL7|A0A7D6VSL7_9CLOTEALdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23255PE=4SV=1	MSMS	OvCa9_classI_Rep3	3	527.8170776367188	2	527.81841	1053.62227	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.71	1	104.36	103.86	104.86	-1.3482								0	0	0	0.036084	1	7423	7423		84.916	2.165	1				61653	35035	50863	50911	67604	67604					0.09760094379407747
VPLGRLKLET	10	Unmodified	_VPLGRLKLET_					0	0	0			REV__nc|ENSG00000186260|Q9ULH7-4|MRTFB	REV__nc|ENSG00000186260|Q9ULH7-4|MRTFB	MULTI-MSMS	OvCa9_classI_Rep3	3	563.3556518554688	2	563.353148	1124.69174	1.3942	0.00078545	-0.18057	-0.00010173	1.2137	0.00068372	563.3529214369328	62.001	0.76881	58.933	58.707	59.476	-3.0685					33	18	3	0	0	0	0.78463	1	2220	2220		20.947	1.8434	1	22286	+		61654	22569	50864	50912	67605	67605					0.13438553328182934
VPLHEKYA	8	Unmodified	_VPLHEKYA_					0	0	0			REV__nc|ENSG00000152910|Q9C0A0-2|CNTNAP4	REV__nc|ENSG00000152910|Q9C0A0-2|CNTNAP4	MULTI-MSMS	OvCa9_classI_Rep2	2	478.7615051269531	2	478.763635	955.512717	-1.3331	-0.00063822	-3.1793	-0.0015222	-4.5124	-0.0021604	478.76197908544503	53.514	1.6905	50.7	50.231	51.922	-2.8139					84	33	4	0	0	0	0.52992	1	3633	3633		74.517	2.6391	1	447130	+		61655	20310	50865	50913	67606	67606					0.03318088760079263
VPLHTYLE	8	Unmodified	_VPLHTYLE_					0	0	0			REV__ENSG00000111231|ENST00000228827|GPN3	REV__ENSG00000111231|ENST00000228827|GPN3	MULTI-MSMS	OvCa9_classI_Rep3	3	486.2645568847656	2	486.263468	970.512382	1.1545	0.00056141	2.1439	0.0010425	3.2985	0.0016039	486.26439439503525	61.985	2.2064	58.916	57.872	60.078	-3.0685					97	53	2	0	0	0	0.7043	1	2217	2217		42.474	0.078325	1	48498	+		61656	18022	50866	50914	67607	67607					0.025946690402292916
VPLLIILTLL	10	Unmodified	_VPLLIILTLL_					0	0	0			REV__nc|ENSG00000138798|P01133-2|EGF	REV__nc|ENSG00000138798|P01133-2|EGF	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.3150634765625	2	554.391211	1106.76787	0.49522	0.00027455	-2.1184	-0.0011744	-1.6232	-0.0008999	554.8915585013139	114.33	0.18113	114.33	114.2	114.38	0					7	3	3	0	0	0	0.027302	1	13035	13035		7.1934	0	1	31605	+		61657	19575	50867	50915	67608	67608					0.21875557175621907
VPLLPCTVLR	10	Unmodified	_VPLLPCTVLR_					0	0	0		ENST00000308153.8_1_7:44875214-44880550:-|nuORF	ENST00000308153.8_1_7:44875214-44880550:-|nuORF	ENST00000308153.8_1_7:44875214-44880550:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.7997436523438	2	555.83882	1109.66309	0.11663	6.483E-05	3.8178	0.0021221	3.9344	0.0021869	555.8406169759553	62.802	0.87232	59.344	59.061	59.933	-3.4577					34	17	3	0	0	0	0.026552	1	4366	4366		53.351	0	1	60161			61658	10264	50868	50916	67609	67609					0.11264112427375039
VPLLRWGR	8	Unmodified	_VPLLRWGR_					0	0	0			REV__chr4:3485341-3485539|245|10.33|0.15|6.07|+|1|None,DOK7|1	REV__chr4:3485341-3485539|245|10.33|0.15|6.07|+|1|None,DOK7|1	MULTI-SECPEP	OvCa9_classI_Rep3	3	497.830078125	2	498.808711	995.602869	-0.82889	-0.00041346	-0.23594	-0.00011769	-1.0648	-0.00053115	498.8086300426569	90.332	0.61458	88.251	88.004	88.619	-2.0805					17	11	2	0	0	0	0.028476	1	5617	5617		18.324	0	1	19999	+		61659	16053	50869	50917	67610	67610					0.10489182879177861
VPLPKIQKL	9	Unmodified	_VPLPKIQKL_					0	0	0			REV__ENST00000317357.9_1_6:107956536-107979693:+|nuORF	REV__ENST00000317357.9_1_6:107956536-107979693:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.3191528320312	2	518.349877	1034.6852	-0.47613	-0.0002468	-0.76271	-0.00039535	-1.2388	-0.00064215	518.3510742382299	94.08	0.40831	92.184	91.898	92.307	-1.8956					10	7	2	0	0	0	0.027462	1	6034	6034		50.025	7.5501	1	17541	+		61660	24413	50870	50918	67611	67611					0.1692466016745584
VPLQTDLR	8	Unmodified	_VPLQTDLR_					0	0	0		ENSG00000178607|ENST00000433197|ERN1	ENSG00000178607|ENST00000433197|ERN1	ENSG00000178607|ENST00000433197|ERN1	MULTI-SECPEP	OvCa9_classI_Rep3	3	470.79736328125	2	471.274367	940.53418	0.6172	0.00029087	-0.30602	-0.00014422	0.31118	0.00014665	471.2740443093329	79.301	1.1468	76.962	76.562	77.709	-2.3399					39	22	2	0	0	0	0.028476	1	4305	4305		31.955	5.1588	1	223970			61661	7766	50871	50919	67612	67612					0.0615347378881097
VPLQVFDGP	9	Unmodified	_VPLQVFDGP_					0	0	0			REV__ENST00000468170.1_1_22:24943827-24950959:-|nuORF	REV__ENST00000468170.1_1_22:24943827-24950959:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	486.26513671875	2	486.263468	970.512382	1.1545	0.00056141	2.1439	0.0010425	3.2985	0.0016039	486.26439439503525	61.985	2.2064	58.916	57.872	60.078	-3.0685					97	53	2	0	0	0	0.62352	1	2207	2207		29.15	2.3535	1	48498	+		61662	19583	50872	50920	67613	67613					0.025946690402406603
VPLRTRQEPGL	11	Unmodified	_VPLRTRQEPGL_					0	0	0			REV__NOC4L-ASPSCR1|2|fusion	REV__NOC4L-ASPSCR1|2|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3693237304688	2	633.369861	1264.72517	-4.8824	-0.0030923	3.9881	0.002526	-0.89421	-0.00056637	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.70761	1	13092	13092		27.047	9.5793	1	765700	+		61663	28995	50873	50921	67614	67614					0.1033955510006308
VPLVALLVLV	10	Unmodified	_VPLVALLVLV_					0	0	0			REV__nc|ENSG00000204655|Q16653-12|MOG	REV__nc|ENSG00000204655|Q16653-12|MOG	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.29541015625	2	518.362453	1034.71035	-0.82902	-0.00042973	-3.338	-0.0017303	-4.167	-0.00216	518.3608731500334	93.432	0.24776	91.47	91.279	91.526	-1.9617					6	4	2	0	0	0	0.026839	1	5986	5986		44.531	0	1	9310.5	+		61664	23176	50874	50922	67615	67615					0.1943871497001055
VPMFLLDNV	9	Unmodified	_VPMFLLDNV_					0	0	0			REV__ENST00000264893.10_1_4:77955861-77956008:+|nuORF	REV__ENST00000264893.10_1_4:77955861-77956008:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.2803344726562	2	524.280803	1046.54705	-0.92062	-0.00048266	-3.6594	-0.0019186	-4.5801	-0.0024012	524.278789793798	63.076	2.1832	59.601	58.649	60.833	-3.475					68	44	2	0	0	0	0.38529	1	4432	4432		53.351	3.9099	1	377140	+		61665	24024	50875	50923	67616	67616					0.025641688567020537
VPMIEAVKTQ	10	Unmodified	_VPMIEAVKTQ_					0	0	0		tr|A0A553SUM1|A0A553SUM1_NIACIAlpha-acetolactatedecarboxylaseOS=NialliacirculansOX=1397GN=budAPE=3SV=1	tr|A0A553SUM1|A0A553SUM1_NIACIAlpha-acetolactatedecarboxylaseOS=NialliacirculansOX=1397GN=budAPE=3SV=1	tr|A0A553SUM1|A0A553SUM1_NIACIAlpha-acetolactatedecarboxylaseOS=NialliacirculansOX=1397GN=budAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	557.8456420898438	2	558.310092	1114.60563	-1.2452	-0.0006952	-2.5008	-0.0013962	-3.746	-0.0020915	558.3085981747147	87.237	1.8272	85.06	84.734	86.561	-2.1768					93	35	4	0	0	0	0.026802	1	5378	5378		26.693	4.733	1	860750			61666	34623	50876	50924	67617	67617					0.05291225431165003
VPMLRRVQ	8	Unmodified	_VPMLRRVQ_					0	0	0			REV__ENSG00000128519|ENST00000249284|TAS2R16	REV__ENSG00000128519|ENST00000249284|TAS2R16	MULTI-MSMS	OvCa9_classI_Rep2	2	499.8032531738281	2	499.800029	997.585505	2.9668	0.0014828	3.0282	0.0015135	5.9951	0.0029963	499.80144783197306	25.905	0.3849	23.195	23.033	23.418	-2.7097					15	9	2	0	0	0	0.74595	1	316	316		14.664	2.4572	1	25775	+		61667	18856	50877	50925	67618	67618					0.08661519281861274
VPMMHQTTE	9	Unmodified	_VPMMHQTTE_					0	0	0		ENSG00000253309|ENST00000681248|SERPINE3;nc|ENSG00000253309|A8MV23|SERPINE3	ENSG00000253309|ENST00000681248|SERPINE3	ENSG00000253309|ENST00000681248|SERPINE3	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3279418945312	2	537.241352	1072.46815	-0.92045	-0.0004945	0.98829	0.00053095	0.06784	3.6446E-05	537.2416714828836	34.855	0.18584	34.855	34.725	34.911	0					5	3	2	0	0	0	0.027462	1	1698	1698		16.473	10.16	1	24482			61668	9429	50878	50926	67619	67619					-0.06518426439902214
VPMTSVPMSTF	11	2 Oxidation (M)	_VPM(Oxidation (M))TSVPM(Oxidation (M))STF_		VPM(1)TSVPM(1)STF		VPM(62)TSVPM(62)STF	0	0	2			REV__nc|ENSG00000169876|Q685J3-2|MUC17	REV__nc|ENSG00000169876|Q685J3-2|MUC17	MULTI-MSMS	OvCa9_classI_Rep4_	4	614.783935546875	2	614.78305	1227.55155	-0.69044	-0.00042447	0.80376	0.00049414	0.11332	6.9664E-05	614.7834486429165	99.769	1.4854	97.443	97.108	98.593	-2.3253					83	28	5	0	0	0	0.38665	1	8897	8897		62.107	9.1707	1	705570	+		61669	21490	50879	50927	67620	67620		502;503			-0.05312734782705775
VPMVLGHLV	9	Unmodified	_VPMVLGHLV_					0	0	0			REV__ENSG00000205108|ENST00000378788|FAM205A	REV__ENSG00000205108|ENST00000378788|FAM205A	MULTI-MSMS	OvCa9_classI_Rep2	2	482.7847900390625	2	482.786056	963.557558	-1.6052	-0.00077495	-2.0927	-0.0010103	-3.6978	-0.0017853	482.78488077781606	119.78	1.8256	119.61	119.25	121.08	-0.17138					103	36	4	0	0	0	0.53728	4	11536	11536;11549;11555;11575		39.021	5.5285	1	403680	+		61670	23202	50880	50928	67621;67622;67623;67624	67621					0.07432196301783733
VPMVLGHLV	9	Unmodified	_VPMVLGHLV_					0	0	0			REV__ENSG00000205108|ENST00000378788|FAM205A	REV__ENSG00000205108|ENST00000378788|FAM205A	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.7845458984375	2	482.786056	963.557558	-0.56756	-0.00027401	-3.2223	-0.0015557	-3.7898	-0.0018297	482.7843636752227	121.17	1.9803	119.83	119.49	121.47	-1.3479					106	38	5	0	0	0	0.42921	3	11400	11400;11420;11432		49.211	12.052	1	662880	+		61671	23202	50880	50928	67625;67626;67627	67625					0.07432196301783733
VPNAGRGLVRL	11	Unmodified	_VPNAGRGLVRL_					0	0	0		ENST00000557159.5_1_14:20924026-20925664:+|nuORF;ENSG00000100823|ENST00000216714|APEX1	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	576.354736328125	2	576.354014	1150.69348	-0.29031	-0.00016732	-0.5669	-0.00032673	-0.85721	-0.00049406	576.3537371528553	71.759	4.075	69.252	68.91	72.985	-2.5071					188	77	5	0	0	0	0.56722	1	5817	5817		47.657	11.211	1	5146300			61672	2109	50881	50929	67628	67628					0.12415607136813378
VPNAGRGLVRL	11	Unmodified	_VPNAGRGLVRL_					0	0	0		ENST00000557159.5_1_14:20924026-20925664:+|nuORF;ENSG00000100823|ENST00000216714|APEX1	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	ENST00000557159.5_1_14:20924026-20925664:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	576.3538818359375	2	576.354014	1150.69348	-0.5103	-0.00029411	-0.49695	-0.00028642	-1.0073	-0.00058053	576.3538085628105	72.001	4.4609	69.399	69.081	73.542	-2.6023					248	89	5	0	0	0	0.46066	1	3425	3425		56.721	0	1	7516400			61673	2109	50881	50929	67629	67629					0.12415607136813378
VPNEIINKN	9	Unmodified	_VPNEIINKN_					0	0	0			REV__tr|A0A7D7A6Q0|A0A7D7A6Q0_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11080PE=4SV=1	REV__tr|A0A7D7A6Q0|A0A7D7A6Q0_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11080PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.798828125	2	520.790381	1039.56621	-0.69246	-0.00036063	3.9341	0.0020488	3.2417	0.0016882	520.7918145665523	68.697	0.29224	68.697	68.523	68.815	0					9	6	2	0	0	0	0.027047	1	6480	6480		99.375	22.601	1	185190	+		61674	32663	50882	50930	67630	67630					0.04800841471956119
VPNGCCSW	8	Unmodified	_VPNGCCSW_					0	0	0		ENST00000230124.7_1_6:110012515-110012560:+|nuORF	ENST00000230124.7_1_6:110012515-110012560:+|nuORF	ENST00000230124.7_1_6:110012515-110012560:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1719055175781	2	433.170198	864.325844	1.9505	0.00084491	2.0412	0.00088417	3.9917	0.0017291	433.17100760562903	63.152	4.2639	60.118	58.202	62.466	-3.0339					141	92	2	0	0	0	0.75241	1	2364	2364		25.45	3.7478	1	38128			61675	9719	50883	50931	67631	67631					-0.11174594391434312
VPNILVIAT	9	Unmodified	_VPNILVIAT_					0	0	0		ENSG00000108559|ENST00000573584|NUP88;ENST00000574867.5_1_17:5292093-5322970:-|nuORF	ENSG00000108559|ENST00000573584|NUP88	ENSG00000108559|ENST00000573584|NUP88	MULTI-MSMS	OvCa9_classI_Rep2	2	470.2959289550781	2	470.29731	938.580068	-0.49251	-0.00023162	-2.9033	-0.0013654	-3.3958	-0.001597	470.29591238963496	32.315	1.7376	29.606	29.382	31.119	-2.7097					90	34	5	0	0	0	0.52083	1	1059	1059		40.573	0	1	1326000			61676	2662	50884	50932	67632	67632					0.10832118971029558
VPNIQQIRL	9	Unmodified	_VPNIQQIRL_					0	0	0		ENSG00000163026|ENST00000295148|WDCP;nc|ENSG00000163026|Q9H6R7-2|WDCP	ENSG00000163026|ENST00000295148|WDCP	ENSG00000163026|ENST00000295148|WDCP	MULTI-MSMS	OvCa9_classI_Rep2	2	540.83154296875	2	540.82984	1079.64513	-0.46856	-0.00025341	3.3565	0.0018153	2.8879	0.0015619	540.8317360682152	123.45	3.5017	123.21	122.89	126.4	-0.23193					177	70	5	0	0	0	0.42057	1	11979	11979		50.025	4.0726	1	7794400			61677	6256	50885	50933	67633	67633					0.10849113496897189
VPNKKVDLR	9	Unmodified	_VPNKKVDLR_					0	0	0			REV__nc|ENSG00000129003|Q709C8-4|VPS13C	REV__nc|ENSG00000129003|Q709C8-4|VPS13C	MULTI-MSMS	OvCa9_classI_Rep2	2	534.8294677734375	2	534.82984	1067.64513	-1.8977	-0.0010149	1.2601	0.00067393	-0.63758	-0.000341	534.8303726686963	55.36	2.2835	52.546	52.122	54.406	-2.8139					113	45	4	0	0	0	0.19758	1	3838	3838		76.774	1.7308	1	786440	+		61678	18881	50886	50934	67634	67634					0.11401113496890503
VPNPVRAAL	9	Unmodified	_VPNPVRAAL_					0	0	0			REV__ENST00000422847.1_1_10:81978568-81978796:+|nuORF	REV__ENST00000422847.1_1_10:81978568-81978796:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	468.7852783203125	2	468.784902	935.55525	-0.19699	-9.2346E-05	0.16822	7.8858E-05	-0.028771	-1.3487E-05	468.7848376187254	47.632	0.99291	47.632	47.379	48.372	0					45	22	3	0	0	0	0.52083	1	3437	3437		40.573	0	1	1836900	+		61679	25625	50887	50935	67635	67635					0.08489483888308769
VPNQKRLTL	9	Unmodified	_VPNQKRLTL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	OvCa9_classI_Rep2	2	534.8291015625	2	534.82984	1067.64513	-1.8977	-0.0010149	1.2601	0.00067393	-0.63758	-0.000341	534.8303726686963	55.36	2.2835	52.546	52.122	54.406	-2.8139					113	45	4	0	0	0	0.083631	7	3855	3843;3849;3855;3862;3869;3875;3880		101.6	37.393	1	786440			61680	1390	50888	50936	67636;67637;67638;67639;67640;67641;67642	67638					0.11401113496890503
VPNQKRLTL	9	Unmodified	_VPNQKRLTL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.8311157226562	2	534.82984	1067.64513	-1.3314	-0.00071208	0.39324	0.00021032	-0.93817	-0.00050176	534.8299661785953	55.92	2.6391	52.626	52.26	54.899	-3.2944					116	51	4	0	0	0	0.094616	4	3535	3535;3547;3560;3572		98.629	27.876	1	1785300			61681	1390	50888	50936	67643;67644;67645;67646	67643					0.11401113496890503
VPNQKRLTLL	10	Unmodified	_VPNQKRLTLL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	OvCa9_classI_Rep2	2	591.3724975585938	2	591.371872	1180.72919	-0.28789	-0.00017025	-0.26936	-0.00015929	-0.55724	-0.00032954	591.3716891406206	72.435	3.4996	69.928	69.329	72.828	-2.5071					176	66	4	0	0	0	0.12738	11	5896	5847;5853;5859;5865;5871;5877;5883;5890;5896;5905;5911		106.68	39.189	1	2901600			61682	1390	50889	50937	67647;67648;67649;67650;67651;67652;67653;67654;67655;67656;67657	67655					0.14605644593802936
VPNQKRLTLL	10	Unmodified	_VPNQKRLTLL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	OvCa9_classI_Rep3	3	591.3723754882812	2	591.371872	1180.72919	-0.52621	-0.00031119	-0.12529	-7.4092E-05	-0.6515	-0.00038528	591.3718596979287	72.64	5.0201	70.038	68.782	73.802	-2.6023					316	100	7	0	0	0	0.025401	15	3467	3459;3461;3467;3473;3479;3485;3491;3498;3504;3510;3518;3524;3531;3537;3567		141.52	56.605	1	4175900			61683	1390	50889	50937	67658;67659;67660;67661;67662;67663;67664;67665;67666;67667;67668;67669;67670;67671;67672	67660					0.14605644593802936
VPNQKRLTLL	10	Unmodified	_VPNQKRLTLL_					0	0	0		ENSG00000068366|ENST00000672401|ACSL4;nc|ENSG00000068366|O60488|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	OvCa9_classI_Rep4_	4	591.373291015625	2	591.371872	1180.72919	-0.56562	-0.00033449	-0.3826	-0.00022626	-0.94822	-0.00056075	591.3716534262408	73.759	2.9314	70.363	69.881	72.813	-3.3961					165	60	4	0	0	0	0.12738	6	5737	5716;5725;5737;5749;5762;5774		106.68	38.367	1	3592700			61684	1390	50889	50937	67673;67674;67675;67676;67677;67678	67675					0.14605644593802936
VPNSRLKAK	9	Unmodified	_VPNSRLKAK_					0	0	0			REV__ENSG00000147234|ENST00000683843|FRMPD3	REV__ENSG00000147234|ENST00000683843|FRMPD3	MSMS	OvCa9_classI_Rep4_	4	506.81536865234375	2	506.816733	1011.61891	NaN	NaN	NaN	NaN	NaN	NaN	NaN	35.15	1	32.301	31.801	32.801	-2.849								0	0	0	0.20617	1	1102	1102		25.574	0	1		+		61685	20054	50890	50938	67679	67679					0.1135684432541666
VPNTLRLEL	9	Unmodified	_VPNTLRLEL_					0	0	0		SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant;nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant	SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	527.81591796875	2	527.816399	1053.61824	-0.85519	-0.00045138	0.36315	0.00019167	-0.49205	-0.00025971	527.8164961822868	104.82	2.1367	104.24	103.87	106.01	-0.57639					74	42	2	0	0	0	0.10502	2	9721	9721;9727		95.815	33.88	1	789880			61686	1794	50891	50939	67680;67681	67680					0.09358004885712035
VPNTLRLEL	9	Unmodified	_VPNTLRLEL_					0	0	0		SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant;nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant	SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant	MSMS	OvCa9_classI_Rep3	3	527.8172607421875	2	527.816399	1053.61824	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.66	1	104.31	103.81	104.81	-1.3482								0	0	0	0.031623	1	7417	7417		88.177	16.299	1				61687	1794	50891	50939	67682	67682					0.09358004885712035
VPNTLRLEL	9	Unmodified	_VPNTLRLEL_					0	0	0		SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant;nc|ENSG00000088827|Q9BZZ2-2|SIGLEC1;nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1;ENSG00000088827|ENST00000344754|SIGLEC1	SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant	SIGLEC1|p.A1506Cfs*9|1|0.15|ENSG00000088827|chr20:3691415-3691416|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.8165283203125	2	527.816399	1053.61824	-1.4424	-0.0007613	1.1647	0.00061473	-0.27769	-0.00014657	527.8169571547911	106.25	1.7574	104.23	103.85	105.6	-2.0161					64	33	2	0	0	0	0.13326	1	9675	9675		88.177	22.374	1	976890			61688	1794	50891	50939	67683	67683					0.09358004885712035
VPNVHGAL	8	Unmodified	_VPNVHGAL_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:806325-806721:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	403.579345703125	2	403.729595	805.444637	0.66191	0.00026723	0.23256	9.3893E-05	0.89448	0.00036113	403.7294889205932	63.929	1.474	61.185	60.739	62.213	-2.7444					58	27	3	0	0	0	0.028476	1	4848	4848		52.299	24.045	1	154680			61689	962	50892	50940	67684	67684					0.03413263900097263
VPNVHGAL	8	Unmodified	_VPNVHGAL_					0	0	0		nc|ENSG00000011304|P26599-1|PTBP1;nc|ENSG00000011304|P26599-2|PTBP1;ENSG00000011304|ENST00000356948|PTBP1;ENST00000586944.5_1_19:806325-806721:+|nuORF	nc|ENSG00000011304|P26599-1|PTBP1	nc|ENSG00000011304|P26599-1|PTBP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	403.7309265136719	2	403.729595	805.444637	2.0547	0.00082953	-1.682	-0.00067908	0.37265	0.00015045	403.7287771578565	64.621	1.552	61.136	60.822	62.374	-3.4854					67	31	4	0	0	0	0.59103	1	4617	4617		65.897	8.4448	1	774830			61690	962	50892	50940	67685	67685					0.03413263900097263
VPNVIPPKSS	10	Unmodified	_VPNVIPPKSS_					0	0	0		HERVH-int_dup82|chr1:53424769-53427698:+|2.2654386177007835|0.0864871400321217|4.71|417.0|7|1|sense	HERVH-int_dup82|chr1:53424769-53427698:+|2.2654386177007835|0.0864871400321217|4.71|417.0|7|1|sense	HERVH-int_dup82|chr1:53424769-53427698:+|2.2654386177007835|0.0864871400321217|4.71|417.0|7|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2852783203125	2	519.303124	1036.5917	-1.0511	-0.00054582	-1.9928	-0.0010349	-3.0438	-0.0015807	519.3019458514315	28.871	0.24914	28.871	28.688	28.937	0					8	4	3	0	0	0	0.026982	1	986	986		10.866	0	1	21515			61691	14447	50893	50941	67686	67686					0.07486315994378856
VPPALHCL	8	Unmodified	_VPPALHCL_					0	0	0			REV__ENST00000412565.2_3_14:24024951-24025206:-|nuORF	REV__ENST00000412565.2_3_14:24024951-24025206:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	424.572509765625	2	425.236199	848.457844	0.34968	0.0001487	-2.6575	-0.0011301	-2.3078	-0.00098137	425.23488817405274	73.64	1.0221	73.64	73.113	74.135	0					52	25	3	0	0	0	0.028476	1	7196	7196		24.504	7.799	1	934720	+		61692	25497	50894	50942	67687	67687					0.02755378687800203
VPPALHCL	8	Unmodified	_VPPALHCL_					0	0	0			REV__ENST00000412565.2_3_14:24024951-24025206:-|nuORF	REV__ENST00000412565.2_3_14:24024951-24025206:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	425.236199	848.457844	-0.19342	-8.2248E-05	-8.3301	-0.0035422	-8.5235	-0.0036245	425.23262636921464	76.684	0.62033	73.745	73.55	74.171	-2.9389	0.052513	-0.001738	NaN	24.504	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40067	+		61693	25497	50894	50942							0.02755378687800203
VPPAQLSL	8	Unmodified	_VPPAQLSL_					0	0	0			REV__ENST00000446874.5_1_7:44073712-44078582:-|nuORF	REV__ENST00000446874.5_1_7:44073712-44078582:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	412.7458801269531	2	412.747453	823.480354	0.89602	0.00036983	-3.8761	-0.0015999	-2.9801	-0.00123	412.745727074971	134.3	1.3763	134.07	133.07	134.44	-0.22697					63	27	4	0	0	0	0.73288	2	13276	13276;13282		35.201	5.3592	1	259910	+		61694	17759	50895	50943	67688;67689	67688					0.06155301357091503
VPPGGARRPR	10	Unmodified	_VPPGGARRPR_					0	0	0		ENST00000396568.1_1_17:7339131-7339299:+|nuORF	ENST00000396568.1_1_17:7339131-7339299:+|nuORF	ENST00000396568.1_1_17:7339131-7339299:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	531.81689453125	2	531.817599	1061.62064	-1.8698	-0.0009944	0.56891	0.00030256	-1.3009	-0.00069184	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.69986	2	13792	13792;13815		30.504	3.7075	1	166960			61695	11318	50896	50944	67690;67691	67690					0.09229898134026371
VPPGLEFVN	9	Unmodified	_VPPGLEFVN_					0	0	0			REV__nc|ENSG00000288640|O00458-2|IFRD1	REV__nc|ENSG00000288640|O00458-2|IFRD1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.26458740234375	2	486.263468	970.512382	1.1545	0.00056141	2.1439	0.0010425	3.2985	0.0016039	486.26439439503525	61.985	2.2064	58.916	57.872	60.078	-3.0685					97	53	2	0	0	0	0.36502	1	2201	2201		55.504	2.1528	1	48498	+		61696	16422	50897	50945	67692	67692					0.025946690402406603
VPPGPRMA	8	Unmodified	_VPPGPRMA_					0	0	0		ENSG00000123576|ENST00000372588|ESX1	ENSG00000123576|ENST00000372588|ESX1	ENSG00000123576|ENST00000372588|ESX1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	412.74603271484375	2	412.725998	823.437443	3.1335	0.0012933	-1.7009	-0.00070202	1.4325	0.00059125	412.724413530623	135.82	0.29565	134.28	134.1	134.4	-1.5437					7	5	2	0	0	0	0.028476	1	13145	13145		29.842	9.3597	1	3986.6			61697	3607	50898	50946	67693	67693					0.018662080280023474
VPPHPSSMP	9	Unmodified	_VPPHPSSMP_					0	0	0		nc|ENSG00000151702|Q01543-2|FLI1;nc|ENSG00000151702|Q01543-3|FLI1;ENSG00000151702|ENST00000527786|FLI1;ENST00000528790.1_1_11:128676959-128680880:+|nuORF;nc|ENSG00000151702|Q01543-4|FLI1	nc|ENSG00000151702|Q01543-2|FLI1	nc|ENSG00000151702|Q01543-2|FLI1	MULTI-MSMS	OvCa99_classI_Rep5	1	474.73419189453125	2	474.73402	947.453487	1.7775	0.00084385	-3.2614	-0.0015483	-1.4838	-0.00070443	474.7323318887259	122.71	0.88103	122.71	122.49	123.37	0					36	18	3	0	0	0	0.47884	1	14153	14153		44.531	0.41427	1	432860			61698	5577	50899	50947	67694	67694					-0.02234130525744149
VPPLLQAS	8	Unmodified	_VPPLLQAS_					0	0	0		ENST00000538930.5_1_16:57075247-57096263:+|nuORF	ENST00000538930.5_1_16:57075247-57096263:+|nuORF	ENST00000538930.5_1_16:57075247-57096263:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	412.7459411621094	2	412.747453	823.480354	-0.0041108	-1.6967E-06	-3.0137	-0.0012439	-3.0178	-0.0012456	412.74611275073886	135.39	1.6252	134.28	133.62	135.24	-1.1076					83	32	4	0	0	0	0.75991	1	10958	10958		21.702	1.2205	1	589310			61699	13427	50900	50948	67695	67695					0.06155301357091503
VPPLRAGSP	9	Unmodified	_VPPLRAGSP_					0	0	0			REV__chr4:1793465-1793833|330|10.14|0.6|4.08|+|1|FGFR3,FGFR3|1	REV__chr4:1793465-1793833|330|10.14|0.6|4.08|+|1|FGFR3,FGFR3|1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	446.2756652832031	2	447.263802	892.513051	-0.45497	-0.00020349	0.45796	0.00020483	0.0029853	1.3352E-06	447.26376171930315	73.834	1.8222	70.438	69.349	71.172	-3.3961					51	37	2	0	0	0	0.027448	1	5632	5632		35.618	24.107	1	146770	+		61700	16051	50901	50949	67696	67696					0.06249508479936594
VPPLRAGSP	9	Unmodified	_VPPLRAGSP_					0	0	0			REV__chr4:1793465-1793833|330|10.14|0.6|4.08|+|1|FGFR3,FGFR3|1	REV__chr4:1793465-1793833|330|10.14|0.6|4.08|+|1|FGFR3,FGFR3|1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	447.263802	892.513051	2.4815	0.0011099	-6.2164	-0.0027804	-3.735	-0.0016705	447.26271004510295	72.581	1.3045	70.182	69.54	70.844	-2.3999	-0.12839	-0.0054845	NaN	35.618	42	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31619	+		61701	16051	50901	50949							0.06249508479936594
VPPLVDKISR	10	Unmodified	_VPPLVDKISR_					0	0	0			REV__ENSG00000135976|ENST00000420699|ANKRD36	REV__ENSG00000135976|ENST00000420699|ANKRD36	MULTI-MSMS	OvCa9_classI_Rep3	3	562.3412475585938	2	562.345323	1122.67609	-2.9015	-0.0016316	-0.70711	-0.00039764	-3.6086	-0.0020293	562.3448419475409	142.33	4.504	141.32	140	144.5	-1.0106					205	90	3	0	0	0	0.72319	1	11883	11883		27.882	7.8855	1	106680	+		61702	19345	50902	50950	67697	67697					0.11966266811100468
VPPNRVYG	8	Unmodified	_VPPNRVYG_					0	0	0			REV__ENSG00000170917|ENST00000304430|NUDT6	REV__ENSG00000170917|ENST00000304430|NUDT6	MULTI-SECPEP	OvCa99_classI_Rep5	1	450.78515625	2	451.248152	900.481751	0.16587	7.4849E-05	-0.02207	-9.9592E-06	0.1438	6.4889E-05	451.24783293785146	42.992	0.59636	42.992	42.839	43.435	0					24	13	3	0	0	0	0.028476	1	2804	2804		28.254	0	1	404470	+		61703	21575	50903	50951	67698	67698					0.02752935445857929
VPPPAAPIPT	10	Unmodified	_VPPPAAPIPT_					0	0	0		nc|ENSG00000119689|P36957-2|DLST;ENSG00000119689|ENST00000334220|DLST	nc|ENSG00000119689|P36957-2|DLST	nc|ENSG00000119689|P36957-2|DLST	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.27947998046875	2	480.28166	958.548768	0.54428	0.00026141	-2.6228	-0.0012597	-2.0785	-0.00099826	480.2801663951703	161.9	0.86447	161.9	161.36	162.23	0					27	16	2	0	0	0	0.026982	1	18982	18982		30.504	0	1	35000			61704	3384	50904	50952	67699	67699					0.06783545936934843
VPPPIGAAMDL	11	Unmodified	_VPPPIGAAMDL_					0	0	0			REV__ENSG00000213079|ENST00000367178|SCAF8	REV__ENSG00000213079|ENST00000367178|SCAF8	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.8194580078125	2	540.791535	1079.56852	1.9477	0.0010533	-2.5725	-0.0013912	-0.62484	-0.00033791	540.7899315207977	134.32	0.4691	134.32	133.96	134.43	0					15	9	2	0	0	0	0.025611	1	15617	15617		14.865	0	1	137310	+		61705	23255	50905	50953	67700	67700					0.03191553885403664
VPPPPRKPLHT	11	Unmodified	_VPPPPRKPLHT_					0	0	0		ENST00000262965.9_1_19:1610831-1610951:-|nuORF	ENST00000262965.9_1_19:1610831-1610951:-|nuORF	ENST00000262965.9_1_19:1610831-1610951:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8695068359375	2	619.87204	1237.72953	-3.1194	-0.0019336	-1.2014	-0.00074472	-4.3208	-0.0026783	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.72473	1	15146	15146		19.104	0	1	806750			61706	9903	50906	50954	67701	67701					0.1201706431365892
VPPPVPVPL	9	Unmodified	_VPPPVPVPL_					0	0	0			REV__ENST00000525715.5_1_11:1244314-1260349:+|nuORF	REV__ENST00000525715.5_1_11:1244314-1260349:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	458.2393493652344	2	457.789121	913.56369	-0.40195	-0.00018401	-4.2518	-0.0019464	-4.6537	-0.0021304	457.7869466457712	52.447	0.64101	49.634	49.394	50.035	-2.8129					18	12	2	0	0	0	0.027462	1	3544	3544		39.021	0	1	28458	+		61707	27118	50907	50955	67702	67702					0.10345037804950152
VPPQPRSQ	8	Unmodified	_VPPQPRSQ_					0	0	0			REV__ENST00000215095.10_2_16:31001393-31001717:-|nuORF	REV__ENST00000215095.10_2_16:31001393-31001717:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	454.7828063964844	2	454.751059	907.487565	-0.44889	-0.00020414	0.58681	0.00026685	0.13792	6.2718E-05	454.751209306093	70.332	0.67178	70.332	70.089	70.761	0					35	16	3	0	0	0	0.028476	1	6710	6710		25.45	8.0852	1	1486400	+		61708	23707	50908	50956	67703	67703					0.030120339575205435
VPPRKASLT	9	Unmodified	_VPPRKASLT_					0	0	0		ENST00000336726.10_1_22:30476373-30489920:+|nuORF	ENST00000336726.10_1_22:30476373-30489920:+|nuORF	ENST00000336726.10_1_22:30476373-30489920:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	484.7989196777344	2	484.798009	967.581465	2.8519	0.0013826	-2.9026	-0.0014072	-0.050769	-2.4613E-05	484.7963669439601	26.614	0.46519	23.905	23.706	24.171	-2.7097					22	13	2	0	0	0	0.71696	1	399	399		12.207	0.69583	1	19778			61709	10513	50909	50957	67704	67704					0.09637753059791976
VPPRLRLGIQG	11	Unmodified	_VPPRLRLGIQG_					0	0	0		ENST00000369295.3_1_10:115805063-115805390:+|nuORF	ENST00000369295.3_1_10:115805063-115805390:+|nuORF	ENST00000369295.3_1_10:115805063-115805390:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	402.58758544921875	3	402.587418	1204.74043	1.9558	0.00078737	-1.8776	-0.00075588	0.078216	3.1489E-05	402.5866179428177	67.03	2.5083	64.142	63.83	66.339	-2.8873					141	49	4	0	0	0	0.70032	1	2889	2889		29.551	0.38069	1	637180			61710	10893	50910	50958	67705	67705					0.1462446668792836
VPPTVVSFGTV	11	Unmodified	_VPPTVVSFGTV_					0	0	0		ENSG00000106246|ENST00000292478|PTCD1	ENSG00000106246|ENST00000292478|PTCD1	ENSG00000106246|ENST00000292478|PTCD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.78369140625	2	551.810782	1101.60701	-1.3904	-0.00076725	-2.9748	-0.0016415	-4.3652	-0.0024088	551.809235836835	44	0.30003	44	43.823	44.123	0					10	6	2	0	0	0	0.025806	1	2963	2963		24.519	13.008	1	83850			61711	2536	50911	50959	67706	67706					0.06027182791558516
VPPVRDRFLAL	11	Unmodified	_VPPVRDRFLAL_					0	0	0			REV__ENST00000546023.1_1_6:160209518-160209776:-|nuORF	REV__ENST00000546023.1_1_6:160209518-160209776:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8812866210938	2	641.885147	1281.75574	-2.5182	-0.0016164	-1.9587	-0.0012572	-4.4768	-0.0028736	641.8839546837315	150.47	2.9704	149.03	147.78	150.75	-1.4344					235	64	4	0	0	0	0.69081	1	14839	14839		32.812	1.2826	1	344900	+		61712	27415	50912	50960	67707	67707					0.12613333485137446
VPPWLVRGP	9	Unmodified	_VPPWLVRGP_					0	0	0			REV__ENST00000531976.1_1_11:1490730-1491405:-|nuORF	REV__ENST00000531976.1_1_11:1490730-1491405:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	511.7729187011719	2	510.803094	1019.59164	-0.46033	-0.00023514	-3.1957	-0.0016324	-3.656	-0.0018675	510.801137263393	39.846	0.94422	37.136	36.805	37.749	-2.7097					26	17	2	0	0	0	0.027462	1	1985	1985		12.959	5.2689	1	43041	+		61713	27223	50913	50961	67708	67708					0.08262360785045075
VPQGAQAYTI	10	Unmodified	_VPQGAQAYTI_					0	0	0		nc|ENSG00000167524|Q96LW2-3|RSKR;nc|ENSG00000167524|Q96LW2|RSKR;ENSG00000167524|ENST00000301037|RSKR	nc|ENSG00000167524|Q96LW2-3|RSKR	nc|ENSG00000167524|Q96LW2-3|RSKR	MULTI-MSMS	OvCa9_classI_Rep3	3	524.278076171875	2	524.277106	1046.53966	1.2201	0.00063968	1.7979	0.0009426	3.018	0.0015823	524.2778574863617	62.52	2.1768	59.486	58.872	61.049	-3.0339					76	45	2	0	0	0	0.65849	1	2309	2309		35.152	2.3396	1	81064			61714	6796	50914	50962	67709	67709					0.01825152580613576
VPQHAAAI	8	Unmodified	_VPQHAAAI_					0	0	0		ENSG00000203867|ENST00000369519|RBM20	ENSG00000203867|ENST00000369519|RBM20	ENSG00000203867|ENST00000369519|RBM20	MULTI-MSMS	OvCa9_classI_Rep4_	4	403.7303161621094	2	403.729595	805.444637	2.0547	0.00082953	-1.682	-0.00067908	0.37265	0.00015045	403.7287771578565	64.621	1.552	61.136	60.822	62.374	-3.4854					67	31	4	0	0	0	0.60486	1	4606	4606		62.978	0	1	774830			61715	8938	50915	50963	67710	67710					0.03413263900074526
VPQISTLAWY	10	Unmodified	_VPQISTLAWY_					0	0	0		ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	ENSG00000081923|ENST00000648908|ATP8B1	MULTI-MSMS	OvCa9_classI_Rep2	2	589.317138671875	2	589.316232	1176.61791	3.3942	0.0020003	-2.6885	-0.0015844	0.70573	0.0004159	589.3144104722435	24.985	0.67472	22.276	22.153	22.828	-2.7097					32	15	3	0	0	0	0.79213	1	192	192		19.997	0.89325	1	69599			61716	1668	50916	50964	67711	67711					0.03666585165842662
VPQLGAVRLQ	10	Unmodified	_VPQLGAVRLQ_					0	0	0			REV__nc|ENSG00000162542|Q5TGY1-2|TMCO4	REV__nc|ENSG00000162542|Q5TGY1-2|TMCO4	MULTI-MSMS	OvCa9_classI_Rep3	3	540.8306274414062	2	540.82984	1079.64513	2.013	0.0010887	0.75549	0.00040859	2.7684	0.0014973	540.8302826822948	124.41	3.5435	123.37	123.03	126.57	-1.0377					194	67	5	0	0	0	0.52321	1	9640	9640		51.335	5.3835	1	8697600	+		61717	20744	50917	50965	67712	67712					0.10849113496897189
VPQLQVPVLDR	11	Unmodified	_VPQLQVPVLDR_					0	0	0		nc|ENSG00000186854|Q86V40-2|TRABD2A;ENSG00000186854|ENST00000409520|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	nc|ENSG00000186854|Q86V40-2|TRABD2A	MULTI-MSMS	OvCa9_classI_Rep4_	4	421.9166259765625	3	421.918834	1262.73467	-0.4925	-0.00020779	-4.2247	-0.0017825	-4.7172	-0.0019903	421.9169855348621	20.547	1.6698	19.208	18.803	20.473	-1.3386					99	33	4	0	0	0	0.72297	1	121	121		21.78	0.74819	1	609660			61718	8366	50918	50966	67713	67713					0.113813233855808
VPQLTSVPL	9	Unmodified	_VPQLTSVPL_					0	0	0		ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	ENSG00000101216|ENST00000370077|GMEB2	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.28839111328125	2	477.286943	952.559333	0.5643	0.00026933	-0.77263	-0.00036877	-0.20834	-9.9436E-05	477.286425541348	89.351	1.3908	86.748	86.434	87.825	-2.6027					41	27	2	0	0	0	0.44294	1	7678	7678		47.916	0	1	326370			61719	2153	50919	50967	67714	67714					0.08115528591372367
VPQPGRYAL	9	Unmodified	_VPQPGRYAL_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5;LAMA5-GRB7|1|fusion;LAMA5-C20orf151|1|fusion	ENSG00000130702|ENST00000252999|LAMA5;LAMA5-C20orf151|1|fusion	LAMA5-C20orf151|1|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	500.7936096191406	2	500.782359	999.550165	-0.84303	-0.00042218	1.3135	0.00065777	0.47046	0.0002356	500.7828935070073	75.167	1.3497	72.757	72.488	73.838	-2.4106					63	26	4	0	0	0	0.27546	1	3789	3789		65.803	0	1	369720			61720	4000;14793	50920	50968	67715	67715					0.05037180025692578
VPQPGRYAL	9	Unmodified	_VPQPGRYAL_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5;LAMA5-GRB7|1|fusion;LAMA5-C20orf151|1|fusion	ENSG00000130702|ENST00000252999|LAMA5;LAMA5-C20orf151|1|fusion	LAMA5-C20orf151|1|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	500.782359	999.550165	-1.0186	-0.0005101	1.3309	0.00066647	0.31224	0.00015637	500.7822412513656	75.083	1.7598	73.112	72.167	73.926	-1.9711	0.10086	4.7229E-05	NaN	65.803	104	33	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129510			61721	4000;14793	50920	50968							0.05037180025692578
VPQPGRYAL	9	Unmodified	_VPQPGRYAL_					0	0	0		ENSG00000130702|ENST00000252999|LAMA5;LAMA5-GRB7|1|fusion;LAMA5-C20orf151|1|fusion	ENSG00000130702|ENST00000252999|LAMA5;LAMA5-C20orf151|1|fusion	LAMA5-C20orf151|1|fusion	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	500.782359	999.550165	-0.48199	-0.00024137	0.99446	0.00049801	0.51247	0.00025664	500.781866640704	76.103	1.3305	73.164	72.643	73.974	-2.9389	0.15345	-0.00028969	NaN	65.803	89	27	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	435930			61722	4000;14793	50920	50968							0.05037180025692578
VPQPLLTG	8	Unmodified	_VPQPLLTG_					0	0	0		ENST00000482301.1_1_3:49714104-49717481:+|nuORF	ENST00000482301.1_1_3:49714104-49717481:+|nuORF	ENST00000482301.1_1_3:49714104-49717481:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	412.7457580566406	2	412.747453	823.480354	-0.0041108	-1.6967E-06	-3.0137	-0.0012439	-3.0178	-0.0012456	412.74611275073886	135.39	1.6252	134.28	133.62	135.24	-1.1076					83	32	4	0	0	0	0.75241	1	10977	10977		25.45	0	1	589310			61723	12567	50921	50969	67716	67716					0.061553013571028714
VPQPSGRTL	9	Unmodified	_VPQPSGRTL_					0	0	0		nc|ENSG00000131196|O95644-17|NFATC1;nc|ENSG00000131196|O95644-8|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;NFATC1|p.P724Rfs*35|1|0.75|ENSG00000131196|chr18:79486325-79486326|-/GG|frameshift_variant;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1;nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1	nc|ENSG00000131196|O95644-17|NFATC1	nc|ENSG00000131196|O95644-17|NFATC1	MULTI-MSMS	OvCa9_classI_Rep2	2	477.7718811035156	2	477.771991	953.529429	-1.0546	-0.00050385	1.2213	0.00058348	0.16667	7.9631E-05	477.77244512780453	56.054	1.0897	53.25	52.879	53.969	-2.804					32	21	2	0	0	0	0.35694	1	3937	3937		56.434	12.057	1	199600			61724	4048	50922	50970	67717	67717					0.05080589646047429
VPQPSGRTL	9	Unmodified	_VPQPSGRTL_					0	0	0		nc|ENSG00000131196|O95644-17|NFATC1;nc|ENSG00000131196|O95644-8|NFATC1;nc|ENSG00000131196|O95644-11|NFATC1;nc|ENSG00000131196|O95644-3|NFATC1;nc|ENSG00000131196|O95644-10|NFATC1;nc|ENSG00000131196|O95644-2|NFATC1;NFATC1|p.P724Rfs*35|1|0.75|ENSG00000131196|chr18:79486325-79486326|-/GG|frameshift_variant;nc|ENSG00000131196|O95644-5|NFATC1;nc|ENSG00000131196|O95644-4|NFATC1;nc|ENSG00000131196|O95644-6|NFATC1;ENSG00000131196|ENST00000427363|NFATC1	nc|ENSG00000131196|O95644-17|NFATC1	nc|ENSG00000131196|O95644-17|NFATC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.77276611328125	2	477.771991	953.529429	0.3308	0.00015805	-0.64723	-0.00030923	-0.31643	-0.00015118	477.771606475266	56.49	1.6751	53.196	52.769	54.444	-3.2944					71	32	4	0	0	0	0.075543	1	3610	3610		104.06	10.05	1	1084300			61725	4048	50922	50970	67718	67718					0.05080589646047429
VPQPSGTRL	9	Unmodified	_VPQPSGTRL_					0	0	0			REV__ENST00000579585.5_1_17:61771267-61771504:+|nuORF	REV__ENST00000579585.5_1_17:61771267-61771504:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.7738342285156	2	477.771991	953.529429	0.3308	0.00015805	-0.64723	-0.00030923	-0.31643	-0.00015118	477.771606475266	56.49	1.6751	53.196	52.769	54.444	-3.2944					71	32	4	0	0	0	0.035142	1	3619	3619		131.03	3.5697	1	1084300	+		61726	27815	50923	50971	67719	67719					0.05080589646047429
VPQQIKLQLPI	11	Unmodified	_VPQQIKLQLPI_					0	0	0		nc|ENSG00000171634|Q12830|BPTF;ENSG00000171634|ENST00000306378|BPTF	nc|ENSG00000171634|Q12830|BPTF	nc|ENSG00000171634|Q12830|BPTF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	425.7759704589844	3	426.271096	1275.79146	0.0075716	3.2275E-06	-0.3716	-0.0001584	-0.36403	-0.00015518	426.27086917864233	69.051	0.83405	65.561	65.262	66.096	-3.4902					34	16	3	0	0	0	0.026145	1	5215	5215		12.957	0	1	106620			61727	7221	50924	50972	67720	67720					0.16459370942152418
VPQQLVRLQ	9	Unmodified	_VPQQLVRLQ_					0	0	0			REV__nc|ENSG00000223731|Q3ZLR7|SUPT20HL1	REV__nc|ENSG00000223731|Q3ZLR7|SUPT20HL1	MULTI-MSMS	OvCa9_classI_Rep2	2	540.831787109375	2	540.82984	1079.64513	-0.46856	-0.00025341	3.3565	0.0018153	2.8879	0.0015619	540.8317360682152	123.45	3.5017	123.21	122.89	126.4	-0.23193					177	70	5	0	0	0	0.55588	1	11991	11991		37.159	1.5408	1	7794400	+		61728	23355	50925	50973	67721	67721					0.10849113496919927
VPQQLVRLQ	9	Unmodified	_VPQQLVRLQ_					0	0	0			REV__nc|ENSG00000223731|Q3ZLR7|SUPT20HL1	REV__nc|ENSG00000223731|Q3ZLR7|SUPT20HL1	MULTI-MSMS	OvCa9_classI_Rep3	3	540.830810546875	2	540.82984	1079.64513	2.013	0.0010887	0.75549	0.00040859	2.7684	0.0014973	540.8302826822948	124.41	3.5435	123.37	123.03	126.57	-1.0377					194	67	5	0	0	0	0.53957	1	9664	9664		38.806	3.6054	1	8697600	+		61729	23355	50925	50973	67722	67722					0.10849113496919927
VPQRPSIVPVL	11	Unmodified	_VPQRPSIVPVL_					0	0	0			REV__ENST00000552338.5_1_12:50571813-50589811:-|nuORF	REV__ENST00000552338.5_1_12:50571813-50589811:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	602.8739624023438	2	602.874248	1203.73394	-1.257	-0.00075783	0.78262	0.00047182	-0.47442	-0.00028601	602.8746995198144	103.48	1.8281	102.8	102.48	104.3	-0.68459					107	36	5	0	0	0	0.60323	1	9576	9576		44.377	8.7589	1	1480000	+		61730	27495	50926	50974	67723	67723					0.140225287365638
VPQRPSIVPVL	11	Unmodified	_VPQRPSIVPVL_					0	0	0			REV__ENST00000552338.5_1_12:50571813-50589811:-|nuORF	REV__ENST00000552338.5_1_12:50571813-50589811:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	602.8748779296875	2	602.874248	1203.73394	2.2502	0.0013566	-2.7856	-0.0016794	-0.53541	-0.00032278	602.8725233476795	104.38	1.6621	102.94	102.6	104.27	-1.4347					105	31	5	0	0	0	0.50928	2	7291	7265;7291		52.937	15.125	1	1606000	+		61731	27495	50926	50974	67724;67725	67725					0.140225287365638
VPQSFRKI	8	Unmodified	_VPQSFRKI_					0	0	0		ENST00000216038.5_1_22:32783708-32783828:-|nuORF	ENST00000216038.5_1_22:32783708-32783828:-|nuORF	ENST00000216038.5_1_22:32783708-32783828:-|nuORF	MSMS	OvCa99_classI_Rep5	1	487.79449462890625	2	487.792727	973.5709	NaN	NaN	NaN	NaN	NaN	NaN	NaN	45.633	1	45.633	45.133	46.133	0								0	0	0	0.30129	1	3169	3169		40.573	0	1				61732	9662	50927	50975	67726	67726					0.08305770405377189
VPQTVIPKKTG	11	Unmodified	_VPQTVIPKKTG_					0	0	0		nc|ENSG00000147548|Q9BZ95-3|NSD3;nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-2|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3	nc|ENSG00000147548|Q9BZ95-3|NSD3	nc|ENSG00000147548|Q9BZ95-3|NSD3	MULTI-MSMS	OvCa9_classI_Rep2	2	584.355712890625	2	584.358431	1166.70231	-1.5993	-0.00093456	-2.1025	-0.0012286	-3.7018	-0.0021632	584.3570635109503	141.67	3.7966	141.44	139.5	143.3	-0.22697					141	76	3	0	0	0	0.7253	1	14190	14190		11.636	1.3707	1	51857			61733	5363	50928	50976	67727	67727					0.12562535982578993
VPRAILVDL	9	Unmodified	_VPRAILVDL_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;ENST00000489942.1_1_6:3155224-3157697:-|nuORF	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000489942.1_1_6:3155224-3157697:-|nuORF	ENSG00000258947|ENST00000315491|TUBB3	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3158264160156	2	498.316035	994.617516	-0.044391	-2.2121E-05	-0.21861	-0.00010894	-0.263	-0.00013106	498.3157300992715	110.05	1.7303	109.88	109.41	111.14	-0.17236					105	34	7	0	0	0	0.14998	3	10335	10335;10365;10383		84.916	7.0454	1	1087000			61734	9485;8579;12689	50929	50977	67728;67729;67730	67728					0.11999210236660929
VPRAILVDL	9	Unmodified	_VPRAILVDL_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;ENST00000489942.1_1_6:3155224-3157697:-|nuORF	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000489942.1_1_6:3155224-3157697:-|nuORF	ENSG00000258947|ENST00000315491|TUBB3	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3150329589844	2	498.316035	994.617516	0.7807	0.00038904	-1.1222	-0.00055921	-0.3415	-0.00017018	498.31525557924255	111.08	1.6999	109.97	109.44	111.14	-1.1038					98	33	7	0	0	0	0.22621	2	8038	8038;8089		71.877	7.6702	1	1109600			61735	9485;8579;12689	50929	50977	67731;67732	67731					0.11999210236660929
VPRAILVDL	9	Unmodified	_VPRAILVDL_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;ENST00000489942.1_1_6:3155224-3157697:-|nuORF	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000489942.1_1_6:3155224-3157697:-|nuORF	ENSG00000258947|ENST00000315491|TUBB3	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3160705566406	2	498.316035	994.617516	0.23096	0.00011509	-0.60423	-0.0003011	-0.37328	-0.00018601	498.315540241021	111.53	1.5703	110.02	109.53	111.1	-1.5111					86	29	7	0	0	0	0.40667	1	10270	10270		51.335	7.2187	1	1295000			61736	9485;8579;12689	50929	50977	67733	67733					0.11999210236660929
VPRAVLYF	8	Unmodified	_VPRAVLYF_					0	0	0		NAP1L4-CFTR|1|fusion;ENST00000492594.6_1_11:2966840-2977015:-|nuORF;ENST00000528363.5_1_11:2975753-2985939:-|nuORF;ENSG00000205531|ENST00000380542|NAP1L4;nc|ENSG00000205531|Q99733-2|NAP1L4	NAP1L4-CFTR|1|fusion	NAP1L4-CFTR|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.7837829589844	2	482.78437	963.554188	-0.56756	-0.00027401	0.26875	0.00012975	-0.29881	-0.00014426	482.7843636752227	121.17	1.9803	119.83	119.49	121.47	-1.3479					106	38	5	0	0	0	0.74361	1	11445	11445		29.842	4.3914	1	662880			61737	14854	50930	50978	67734	67734					0.07095269519413705
VPREPPVSL	9	Unmodified	_VPREPPVSL_					0	0	0		nc|ENSG00000165282|Q8TEQ8-2|PIGO;ENSG00000165282|ENST00000378617|PIGO;PIGO|p.F580Cfs*44|1|0.03|ENSG00000165282|chr9:35092148-35092149|-/GC|frameshift_variant;ENST00000465745.6_1_9:35094156-35095562:-|nuORF;ENST00000474436.1_1_9:35093318-35095562:-|nuORF	nc|ENSG00000165282|Q8TEQ8-2|PIGO	nc|ENSG00000165282|Q8TEQ8-2|PIGO	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.2901611328125	2	497.290017	992.565481	-0.83845	-0.00041696	0.47863	0.00023802	-0.35983	-0.00017894	497.2900687946997	82.066	2.1884	79.383	78.423	80.612	-2.683					102	44	3	0	0	0	0.2422	2	6753	6753;6777		69.628	5.4204	1	598340			61738	6546	50931	50979	67735;67736	67735					0.06890046822900331
VPREPQVV	8	Unmodified	_VPREPQVV_					0	0	0		ENST00000236192.11_1_1:171707540-171711301:-|nuORF	ENST00000236192.11_1_1:171707540-171711301:-|nuORF	ENST00000236192.11_1_1:171707540-171711301:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	462.27081298828125	2	462.269084	922.523616	0.061709	2.8526E-05	0.36101	0.00016688	0.42272	0.00019541	462.26912217108224	71.69	1.1423	71.69	71.308	72.45	0					64	27	4	0	0	0	0.50674	1	6929	6929		76.847	11.043	1	5828800			61739	9740	50932	50980	67737	67737					0.0592549113438281
VPRGLRPLL	9	Unmodified	_VPRGLRPLL_					0	0	0		nc|ENSG00000187848|Q9UBL9-7|P2RX2	nc|ENSG00000187848|Q9UBL9-7|P2RX2	nc|ENSG00000187848|Q9UBL9-7|P2RX2	MULTI-MSMS	OvCa9_classI_Rep2	2	510.8372802734375	2	510.837468	1019.66038	-0.61834	-0.00031587	-0.42904	-0.00021917	-1.0474	-0.00053504	510.8372371276748	75.208	3.0134	73.237	72.847	75.86	-1.9711					146	57	5	0	0	0	0.36502	1	6189	6189		55.504	0	1	2314200			61740	15226	50933	50981	67738	67738					0.15134025084751102
VPRGPTATA	9	Unmodified	_VPRGPTATA_					0	0	0		ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	MULTI-MSMS	OvCa9_classI_Rep2	2	435.2453308105469	2	435.245609	868.476666	0.63418	0.00027602	-0.35472	-0.00015439	0.27946	0.00012163	435.24533408325397	44.124	1.2939	41.415	41.104	42.398	-2.7097					53	25	3	0	0	0	0.22621	1	2489	2489		71.877	10.906	1	259220			61741	5606	50934	50982	67739	67739					0.037166315832337204
VPRGPTATA	9	Unmodified	_VPRGPTATA_					0	0	0		ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	MULTI-MSMS	OvCa9_classI_Rep4_	4	435.24658203125	2	435.245609	868.476666	-0.58655	-0.00025529	0.9078	0.00039512	0.32125	0.00013982	435.2459349866964	44.17	1.4738	41.163	40.891	42.365	-3.0074					76	28	4	0	0	0	0.11471	2	2165	2165;2201		93.195	7.836	1	1830900			61742	5606	50934	50982	67740;67741	67740					0.037166315832337204
VPRGPTATARF	11	Unmodified	_VPRGPTATARF_					0	0	0		ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	ENSG00000152137|ENST00000281938|HSPB8	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.8317260742188	2	586.830372	1171.64619	-0.56371	-0.0003308	0.040302	2.365E-05	-0.5234	-0.00030715	586.8304383801809	58.645	1.4941	55.253	54.902	56.396	-3.392					74	29	3	0	0	0	0.4397	1	3862	3862		58.246	7.0535	1	1176200			61743	5606	50935	50983	67742	67742					0.06723327865779538
VPRGRIGG	8	Unmodified	_VPRGRIGG_					0	0	0			REV__SVA_B_dup173|chr4:48185818-48187447:+|1.7426897649738875|0.0421009603888101|5.37|413.0|57|2|anti-sense	REV__SVA_B_dup173|chr4:48185818-48187447:+|1.7426897649738875|0.0421009603888101|5.37|413.0|57|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	406.2477111816406	2	406.248486	810.48242	-1.2292	-0.00049936	1.4085	0.00057221	0.17932	7.285E-05	406.24894809520566	140.8	1.576	139.77	139.38	140.96	-1.0339					88	31	4	0	0	0	0.75915	1	11658	11658		20.482	0	1	902300	+		61744	29470	50936	50984	67743	67743					0.06959774885569914
VPRGRLLVL	9	Unmodified	_VPRGRLLVL_					0	0	0		ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	MULTI-MSMS	OvCa9_classI_Rep2	2	511.84454345703125	2	511.845294	1021.67603	-0.69047	-0.00035341	0.68874	0.00035253	-0.0017335	-8.8728E-07	511.84548257829687	83.844	1.9051	82.298	81.692	83.597	-1.5462					91	37	4	0	0	0	0.52083	1	7200	7200		40.573	3.5441	1	636290			61745	2674	50937	50985	67744	67744					0.16606311601799462
VPRGRLLVL	9	Unmodified	_VPRGRLLVL_					0	0	0		ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	ENSG00000108784|ENST00000225927|NAGLU	MULTI-MSMS	OvCa9_classI_Rep3	3	511.8459777832031	2	511.845294	1021.67603	-0.9843	-0.00050381	0.68652	0.00035139	-0.29778	-0.00015242	511.8455626377996	85.007	2.3927	82.787	82.398	84.79	-2.2204					106	47	4	0	0	0	0.52083	2	4964	4964;4970		40.573	1.7665	1	859210			61746	2674	50937	50985	67745;67746	67745					0.16606311601799462
VPRHRRRSAS	10	Unmodified	_VPRHRRRSAS_					0	0	0			REV__ENST00000243286.7_1_X:102862879-102862993:+|nuORF	REV__ENST00000243286.7_1_X:102862879-102862993:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	611.35400390625	2	611.355411	1220.69627	-2.3862	-0.0014588	3.3107	0.002024	0.92458	0.00056525	611.3572929291362	147.43	3.7918	146.48	144.56	148.35	-0.9512					254	75	5	0	0	0	0.69073	2	12409	12403;12409		31.53	9.5699	1	250910	+		61747	23825	50938	50986	67747;67748	67748					0.09474875314322162
VPRHRRRSAS	10	Unmodified	_VPRHRRRSAS_					0	0	0			REV__ENST00000243286.7_1_X:102862879-102862993:+|nuORF	REV__ENST00000243286.7_1_X:102862879-102862993:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	611.355712890625	2	611.355411	1220.69627	-3.1571	-0.0019301	4.2687	0.0026097	1.1115	0.00067955	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.62299	3	12804	12749;12804;12849		39.253	8.7492	1	666990	+		61748	23825	50938	50986	67749;67750;67751	67750					0.09474875314322162
VPRHRRRSAS	10	Unmodified	_VPRHRRRSAS_					0	0	0			REV__ENST00000243286.7_1_X:102862879-102862993:+|nuORF	REV__ENST00000243286.7_1_X:102862879-102862993:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.353271484375	2	611.355411	1220.69627	-2.725	-0.001666	3.6528	0.0022332	0.92779	0.00056721	611.3575283211214	150.83	4.6872	149.39	148.02	152.71	-1.4344					404	109	6	0	0	0	0.67931	1	14933	14933		32.812	14.55	1	435030	+		61749	23825	50938	50986	67752	67752					0.09474875314322162
VPRIIHPLT	9	Unmodified	_VPRIIHPLT_					0	0	0			REV__nc|ENSG00000144354|Q9BWT1-3|CDCA7	REV__nc|ENSG00000144354|Q9BWT1-3|CDCA7	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2787475585938	2	523.329476	1044.6444	-0.52214	-0.00027325	0.87654	0.00045872	0.35439	0.00018547	523.3300800722875	71.179	0.43436	71.179	70.954	71.389	0					16	10	2	0	0	0	0.027462	1	6869	6869		17.365	0	1	285780	+		61750	19903	50939	50987	67753	67753					0.12386318847848088
VPRIQPQSL	9	Unmodified	_VPRIQPQSL_					0	0	0		ENSG00000165506|ENST00000298292|DNAAF2;nc|ENSG00000165506|Q9NVR5-2|DNAAF2	ENSG00000165506|ENST00000298292|DNAAF2	ENSG00000165506|ENST00000298292|DNAAF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.31005859375	2	519.308741	1036.60293	-0.46427	-0.0002411	-0.37033	-0.00019231	-0.8346	-0.00043342	519.3084739047164	79.05	1.6821	76.298	75.991	77.673	-2.7514					75	34	3	0	0	0	0.2422	1	6398	6398		69.628	3.1983	1	635090			61751	6570	50940	50988	67754	67754					0.08609138088513646
VPRIWKIWTV	10	Unmodified	_VPRIWKIWTV_					0	0	0		ENST00000493598.6_1_3:142741355-142741412:+|nuORF	ENST00000493598.6_1_3:142741355-142741412:+|nuORF	ENST00000493598.6_1_3:142741355-142741412:+|nuORF	MSMS	OvCa99_classI_Rep5	1	649.3936767578125	2	649.392608	1296.77066	NaN	NaN	NaN	NaN	NaN	NaN	NaN	116.13	1	116.13	115.63	116.63	0								0	0	0	0.1384	1	13280	13280		31.53	3.4483	1				61752	12740	50941	50989	67755	67755					0.1341482535308387
VPRKAILYPH	10	Unmodified	_VPRKAILYPH_					0	0	0		ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	ENSG00000092439|ENST00000646667|TRPM7	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.3557739257812	2	597.361308	1192.70806	-4.9941	-0.0029833	0.34798	0.00020787	-4.6461	-0.0027754	597.361356414137	157.6	0.96988	156.05	155.73	156.7	-1.545					62	25	3	0	0	0	0.81992	1	15605	15605		16.473	1.6083	1	81979			61753	1894	50942	50990	67756	67756					0.11941679284927886
VPRKPVKHTAM	11	Unmodified	_VPRKPVKHTAM_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.H2029Qfs*32|1|0.9|ENSG00000196924|chrX:154353130-154353140|TGCTGGCCACG/-|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OvCa9_classI_Rep4_	4	421.9169616699219	3	421.916658	1262.72815	-0.4925	-0.00020779	0.93046	0.00039258	0.43796	0.00018478	421.9169855348621	20.547	1.6698	19.208	18.803	20.473	-1.3386					99	33	4	0	0	0	0.46188	2	74	51;74		56.632	12.981	1	609660			61754	8659	50943	50991	67757;67758	67758					0.10729106953249357
VPRLFSLTL	9	Unmodified	_VPRLFSLTL_					0	0	0		ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1;ENST00000527224.1_1_11:65837957-65984297:+|nuORF	ENSG00000175115|ENST00000320580|PACS1	ENSG00000175115|ENST00000320580|PACS1	MULTI-MSMS	OvCa9_classI_Rep3	3	523.32421875	2	523.32386	1044.63317	-0.37111	-0.00019421	0.11957	6.2576E-05	-0.25153	-0.00013163	523.3237349076933	132.36	1.5282	131.23	130.94	132.47	-1.1249					65	30	3	0	0	0	0.44568	1	10578	10578		47.657	1.6851	1	96476			61755	7518	50944	50992	67759	67759					0.1126349675369056
VPRLFSLTL	9	Unmodified	_VPRLFSLTL_					0	0	0		ENSG00000175115|ENST00000320580|PACS1;nc|ENSG00000175115|Q6VY07-2|PACS1;ENST00000527224.1_1_11:65837957-65984297:+|nuORF	ENSG00000175115|ENST00000320580|PACS1	ENSG00000175115|ENST00000320580|PACS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.3218994140625	2	523.32386	1044.63317	3.2837	0.0017184	-3.9487	-0.0020664	-0.66495	-0.00034798	523.3216227934925	132.7	1.7146	131.2	130.95	132.66	-1.5015					74	34	3	0	0	0	0.50149	1	12769	12769		42.396	1.8235	1	157630			61756	7518	50944	50992	67760	67760					0.1126349675369056
VPRLGVML	8	Oxidation (M)	_VPRLGVM(Oxidation (M))L_		VPRLGVM(1)L		VPRLGVM(92)L	0	0	1		ENSG00000105655|ENST00000338128|ISYNA1;chr19:18437715-18437860|179|75.23|0.45|7.39|-|0|None,ISYNA1|1;ENST00000577916.6_1_19:18547702-18548789:-|nuORF	ENSG00000105655|ENST00000338128|ISYNA1	ENSG00000105655|ENST00000338128|ISYNA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.77081298828125	2	450.770406	899.526258	-0.48979	-0.00022078	0.35566	0.00016032	-0.13413	-6.0462E-05	450.77047852463477	95.608	2.1192	93.139	92.16	94.279	-2.4685					94	41	4	0	0	0	0.37872	5	8393	8382;8393;8416;8427;8441		92.191	20.569	1	511760			61757	2483	50945	50993	67761;67762;67763;67764;67765	67762		81			0.07247623267687686
VPRLGVML	8	Oxidation (M)	_VPRLGVM(Oxidation (M))L_					0	0	1		ENSG00000105655|ENST00000338128|ISYNA1;chr19:18437715-18437860|179|75.23|0.45|7.39|-|0|None,ISYNA1|1;ENST00000577916.6_1_19:18547702-18548789:-|nuORF	ENSG00000105655|ENST00000338128|ISYNA1	ENSG00000105655|ENST00000338128|ISYNA1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	450.770406	899.526258	2.0304	0.00091523	-1.9515	-0.0008797	0.078816	3.5528E-05	450.7693849758171	94.218	1.716	93.118	92.382	94.098	-1.0995	-0.0011317	-0.0016346	NaN	92.191	72	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	392620			61758	2483	50945	50993				81			0.07247623267687686
VPRLGVML	8	Oxidation (M)	_VPRLGVM(Oxidation (M))L_					0	0	1		ENSG00000105655|ENST00000338128|ISYNA1;chr19:18437715-18437860|179|75.23|0.45|7.39|-|0|None,ISYNA1|1;ENST00000577916.6_1_19:18547702-18548789:-|nuORF	ENSG00000105655|ENST00000338128|ISYNA1	ENSG00000105655|ENST00000338128|ISYNA1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	450.770406	899.526258	-0.39916	-0.00017993	0.30449	0.00013726	-0.094666	-4.2673E-05	450.7704723620583	94.996	1.5931	93.101	92.561	94.154	-1.8956	-0.018613	0.00039931	NaN	92.191	79	31	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	542860			61759	2483	50945	50993				81			0.07247623267687686
VPRLGVML	8	Unmodified	_VPRLGVML_					0	0	0		ENSG00000105655|ENST00000338128|ISYNA1;chr19:18437715-18437860|179|75.23|0.45|7.39|-|0|None,ISYNA1|1;ENST00000577916.6_1_19:18547702-18548789:-|nuORF	ENSG00000105655|ENST00000338128|ISYNA1	ENSG00000105655|ENST00000338128|ISYNA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	442.77276611328125	2	442.772948	883.531344	-0.26911	-0.00011915	0.32246	0.00014278	0.053358	2.3625E-05	442.7729524851268	105.64	0.85847	103.62	103.35	104.21	-2.0161					36	16	3	0	0	0	0.47599	1	9600	9600		79.939	3.0926	1	216410			61760	2483	50945	50994	67766	67766					0.08491927130296517
VPRLGVML	8	Unmodified	_VPRLGVML_					0	0	0		ENSG00000105655|ENST00000338128|ISYNA1;chr19:18437715-18437860|179|75.23|0.45|7.39|-|0|None,ISYNA1|1;ENST00000577916.6_1_19:18547702-18548789:-|nuORF	ENSG00000105655|ENST00000338128|ISYNA1	ENSG00000105655|ENST00000338128|ISYNA1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	442.772948	883.531344	0.86483	0.00038292	-0.82674	-0.00036606	0.038088	1.6864E-05	442.772436901503	104.02	1.1386	103.45	103.18	104.32	-0.57639	-0.10235	-0.00047914	NaN	79.939	52	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	171280			61761	2483	50945	50994							0.08491927130296517
VPRLGVML	8	Unmodified	_VPRLGVML_					0	0	0		ENSG00000105655|ENST00000338128|ISYNA1;chr19:18437715-18437860|179|75.23|0.45|7.39|-|0|None,ISYNA1|1;ENST00000577916.6_1_19:18547702-18548789:-|nuORF	ENSG00000105655|ENST00000338128|ISYNA1	ENSG00000105655|ENST00000338128|ISYNA1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	442.772948	883.531344	0.66578	0.00029479	-0.59778	-0.00026468	0.067994	3.0106E-05	442.77255072577464	104.93	0.98792	103.58	103.31	104.3	-1.3482	0.031397	-0.00027638	NaN	79.939	41	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	204920			61762	2483	50945	50994							0.08491927130296517
VPRLNLQLKAM	11	Unmodified	_VPRLNLQLKAM_					0	0	0			REV__KAT6A|p.F1751Lfs*32|1|0.04|ENSG00000083168|chr8:41932967-41932968|-/CATAGGCTGCTGGGTATAGGCCTGGCTCCCC|frameshift_variant	REV__KAT6A|p.F1751Lfs*32|1|0.04|ENSG00000083168|chr8:41932967-41932968|-/CATAGGCTGCTGGGTATAGGCCTGGCTCCCC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	641.882080078125	2	641.886832	1281.75911	-4.6434	-0.0029805	-1.9733	-0.0012666	-6.6167	-0.0042472	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.68684	2	15660	15546;15660		34.173	10.65	1	543390	+		61763	17097	50946	50995	67767;67768	67768					0.12950260267484737
VPRLNLQLKAM	11	Unmodified	_VPRLNLQLKAM_					0	0	0			REV__KAT6A|p.F1751Lfs*32|1|0.04|ENSG00000083168|chr8:41932967-41932968|-/CATAGGCTGCTGGGTATAGGCCTGGCTCCCC|frameshift_variant	REV__KAT6A|p.F1751Lfs*32|1|0.04|ENSG00000083168|chr8:41932967-41932968|-/CATAGGCTGCTGGGTATAGGCCTGGCTCCCC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8834228515625	2	641.886832	1281.75911	-5.3554	-0.0034376	-1.2716	-0.00081624	-6.627	-0.0042538	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.70865	3	13150	13027;13150;13169		26.693	3.1702	1	804890	+		61764	17097	50946	50995	67769;67770;67771	67770					0.12950260267484737
VPRLNLQLKAM	11	Unmodified	_VPRLNLQLKAM_					0	0	0			REV__KAT6A|p.F1751Lfs*32|1|0.04|ENSG00000083168|chr8:41932967-41932968|-/CATAGGCTGCTGGGTATAGGCCTGGCTCCCC|frameshift_variant	REV__KAT6A|p.F1751Lfs*32|1|0.04|ENSG00000083168|chr8:41932967-41932968|-/CATAGGCTGCTGGGTATAGGCCTGGCTCCCC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8834838867188	2	641.886832	1281.75911	-3.6311	-0.0023307	-2.9625	-0.0019016	-6.5935	-0.0042323	641.8847801872174	153.39	4.0845	151.94	150.68	154.77	-1.4516					420	106	6	0	0	0	0.65947	2	15160	15160;15184		39.253	13.709	1	809780	+		61765	17097	50946	50995	67772;67773	67772					0.12950260267484737
VPRNRLRSK	9	Unmodified	_VPRNRLRSK_					0	0	0			REV__ENSG00000164151|ENST00000296564|ICE1	REV__ENSG00000164151|ENST00000296564|ICE1	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.3497314453125	2	563.351806	1124.68906	-3.4711	-0.0019555	1.7939	0.0010106	-1.6772	-0.00094486	563.3526768291488	155.95	1.0883	154.46	153.97	155.06	-1.4911					49	32	2	0	0	0	0.68424	1	15436	15436		21.96	2.8564	1	20000	+		61766	20949	50947	50996	67774	67774					0.13170142713875066
VPRPAVLDPAL	11	Unmodified	_VPRPAVLDPAL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000506401.6_1_17:48148218-48152910:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	OvCa9_classI_Rep2	2	574.3436279296875	2	574.345323	1146.67609	-1.7317	-0.00099457	0.98094	0.0005634	-0.75071	-0.00043117	574.3458180931545	99.995	2.5316	99.165	98.019	100.55	-0.83051					122	50	4	0	0	0	0.25285	3	9136	9126;9136;9142		72.879	19.943	1	449440			61767	863	50948	50997	67775;67776;67777	67776					0.10862266811136578
VPRPAVLDPAL	11	Unmodified	_VPRPAVLDPAL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000506401.6_1_17:48148218-48152910:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	OvCa9_classI_Rep3	3	574.34619140625	2	574.345323	1146.67609	-1.4737	-0.00084642	0.7903	0.00045391	-0.68341	-0.00039251	574.3456723909679	100.88	1.9333	99.27	98.565	100.5	-1.6053					106	37	4	0	0	0	0.17933	5	6875	6860;6863;6869;6875;6883		82.75	26.029	1	650880			61768	863	50948	50997	67778;67779;67780;67781;67782	67781					0.10862266811136578
VPRPAVLDPAL	11	Unmodified	_VPRPAVLDPAL_					0	0	0		ENSG00000005884|ENST00000320031|ITGA3;ENST00000505306.5_1_17:48133647-48154208:+|nuORF;nc|ENSG00000005884|P26006-1|ITGA3;ENST00000506401.6_1_17:48148218-48152910:+|nuORF	ENSG00000005884|ENST00000320031|ITGA3	ENSG00000005884|ENST00000320031|ITGA3	MULTI-MSMS	OvCa9_classI_Rep4_	4	574.346435546875	2	574.345323	1146.67609	-0.89277	-0.00051276	-0.39225	-0.00022529	-1.285	-0.00073805	574.3449586362831	101.45	2.4722	99.179	98.03	100.5	-2.2665					104	48	3	0	0	0	0.25285	3	9105	9095;9105;9131		72.879	16.158	1	675430			61769	863	50948	50997	67783;67784;67785	67784					0.10862266811136578
VPRPNSRVEIV	11	Unmodified	_VPRPNSRVEIV_					0	0	0		NOS1AP|p.S460Vfs*43|1|0.07|ENSG00000198929|chr1:162367321-162367322|-/A|frameshift_variant;nc|ENSG00000198929|O75052-3|NOS1AP;NOS1AP|p.S460Wfs*44|1|0.07|ENSG00000198929|chr1:162367323-162367324|-/TGGT|frameshift_variant;ENSG00000198929|ENST00000361897|NOS1AP	NOS1AP|p.S460Vfs*43|1|0.07|ENSG00000198929|chr1:162367321-162367322|-/A|frameshift_variant	NOS1AP|p.S460Vfs*43|1|0.07|ENSG00000198929|chr1:162367321-162367322|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	633.368896484375	2	633.369861	1264.72517	-4.5141	-0.0028591	3.4388	0.002178	-1.0753	-0.00068108	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.71789	1	15564	15564		23.523	5.2606	1	369460			61770	8909	50949	50998	67786	67786					0.10339555100085818
VPRPNSRVEIV	11	Unmodified	_VPRPNSRVEIV_					0	0	0		NOS1AP|p.S460Vfs*43|1|0.07|ENSG00000198929|chr1:162367321-162367322|-/A|frameshift_variant;nc|ENSG00000198929|O75052-3|NOS1AP;NOS1AP|p.S460Wfs*44|1|0.07|ENSG00000198929|chr1:162367323-162367324|-/TGGT|frameshift_variant;ENSG00000198929|ENST00000361897|NOS1AP	NOS1AP|p.S460Vfs*43|1|0.07|ENSG00000198929|chr1:162367321-162367322|-/A|frameshift_variant	NOS1AP|p.S460Vfs*43|1|0.07|ENSG00000198929|chr1:162367321-162367322|-/A|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	633.368408203125	2	633.369861	1264.72517	-3.7067	-0.0023477	2.7994	0.0017731	-0.90726	-0.00057463	633.3714685413702	153.42	3.7144	151.96	150.68	154.4	-1.4516					273	94	4	0	0	0	0.71789	2	15188	15093;15188		23.523	4.1198	1	395790			61771	8909	50949	50998	67787;67788	67788					0.10339555100085818
VPRPPLARL	9	Unmodified	_VPRPPLARL_					0	0	0			REV__ENST00000378203.5_1_10:15139264-15139378:+|nuORF	REV__ENST00000378203.5_1_10:15139264-15139378:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.936767578125	2	509.829643	1017.64473	-0.00038962	-1.9864E-07	0.98741	0.00050341	0.98702	0.00050321	509.8299641372915	73.564	0.71236	73.564	73.195	73.907	0					46	17	4	0	0	0	0.027462	1	7246	7246		23.042	0	1	1881400	+		61772	25137	50950	50999	67789	67789					0.13661738567691373
VPRPPQTSL	9	Unmodified	_VPRPPQTSL_					0	0	0		nc|ENSG00000011451|O95785|WIZ;ENSG00000011451|ENST00000673675|WIZ;nc|ENSG00000011451|O95785-4|WIZ;nc|ENSG00000011451|O95785-3|WIZ;ENSG00000011451.21,WIZ,chr19,-,I7.1,15432762,15433164|90|6.04|3|intron;ENSG00000011451.21,WIZ,chr19,-,I7.1,15432762,15433164|90|6.04|2|intron;ENSG00000011451.21,WIZ,chr19,-,I7.1,15432762,15433164|90|6.04|4|intron;ENSG00000011451.21,WIZ,chr19,-,I7.1,15432762,15433164|90|6.04|6|intron;ENSG00000011451.21,WIZ,chr19,-,I7.1,15432762,15433164|90|6.04|5|intron;ENSG00000011451.21,WIZ,chr19,-,I7.1,15432762,15433164|90|6.04|1|intron;ENST00000600632.1_1_19:15534992-15535583:-|nuORF;nc|ENSG00000011451|O95785-2|WIZ;ENSG00000011451.21,WIZ,chr19,-,I7.1,15432762,15433164|90|6.04|7|intron	nc|ENSG00000011451|O95785|WIZ	nc|ENSG00000011451|O95785|WIZ	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.78863525390625	2	497.787641	993.56073	-0.82876	-0.00041255	0.33613	0.00016732	-0.49263	-0.00024522	497.78785735247334	69.488	3.8497	66.007	65.221	69.071	-3.4812					172	78	4	0	0	0	0.029147	5	5197	5157;5177;5185;5197;5209		136.27	34.667	1	2277500			61773	965	50951	51000	67790;67791;67792;67793;67794	67793					0.0636916268015284
VPRPPSLLATL	11	Unmodified	_VPRPPSLLATL_					0	0	0		ENST00000494435.5_1_21:47924311-47965916:+|nuORF;nc|ENSG00000160305|Q14689-3|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;nc|ENSG00000160305|Q14689-5|DIP2A;nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A	ENST00000494435.5_1_21:47924311-47965916:+|nuORF	ENST00000494435.5_1_21:47924311-47965916:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	582.361328125	2	582.360973	1162.70739	-1.051	-0.00061207	0.85213	0.00049625	-0.19889	-0.00011583	582.3613804294387	116.28	1.9799	116.16	115.59	117.57	-0.11777					109	39	5	0	0	0	0.046751	10	11110	11089;11093;11098;11110;11116;11122;11128;11134;11141;11147		117.81	49.024	1	638600			61774	6057	50952	51001	67795;67796;67797;67798;67799;67800;67801;67802;67803;67804	67798					0.13254839845239985
VPRPPSLLATL	11	Unmodified	_VPRPPSLLATL_					0	0	0		ENST00000494435.5_1_21:47924311-47965916:+|nuORF;nc|ENSG00000160305|Q14689-3|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;nc|ENSG00000160305|Q14689-5|DIP2A;nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A	ENST00000494435.5_1_21:47924311-47965916:+|nuORF	ENST00000494435.5_1_21:47924311-47965916:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	582.3603515625	2	582.360973	1162.70739	-1.9743	-0.0011498	1.7664	0.0010287	-0.20794	-0.00012109	582.3619073180486	117.3	2.4773	116.26	115.6	118.07	-1.0324					133	49	5	0	0	0	0.068862	10	8795	8773;8778;8783;8789;8795;8807;8813;8820;8826;8840		104.01	42.998	1	707120			61775	6057	50952	51001	67805;67806;67807;67808;67809;67810;67811;67812;67813;67814	67809					0.13254839845239985
VPRPPSLLATL	11	Unmodified	_VPRPPSLLATL_					0	0	0		ENST00000494435.5_1_21:47924311-47965916:+|nuORF;nc|ENSG00000160305|Q14689-3|DIP2A;nc|ENSG00000160305|Q14689-2|DIP2A;nc|ENSG00000160305|Q14689-4|DIP2A;nc|ENSG00000160305|Q14689-5|DIP2A;nc|ENSG00000160305|Q14689-6|DIP2A;ENSG00000160305|ENST00000417564|DIP2A	ENST00000494435.5_1_21:47924311-47965916:+|nuORF	ENST00000494435.5_1_21:47924311-47965916:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	582.360595703125	2	582.360973	1162.70739	-1.3483	-0.00078517	1.0374	0.00060416	-0.31082	-0.00018101	582.3615197468338	117.53	2.2585	116.19	115.42	117.68	-1.3444					117	42	5	0	0	0	0.055892	5	11000	10967;10977;10988;11000;11012		112.11	38.21	1	861700			61776	6057	50952	51001	67815;67816;67817;67818;67819	67818					0.13254839845239985
VPRPPSNPP	9	Unmodified	_VPRPPSNPP_					0	0	0		ENST00000528599.1_1_6:111894079-111913289:-|nuORF;ENST00000532708.5_1_6:111888790-111922417:-|nuORF;nc|ENSG00000056972|O43734-5|TRAF3IP2;ENSG00000056972|ENST00000368761|TRAF3IP2;nc|ENSG00000056972|O43734|TRAF3IP2	ENST00000528599.1_1_6:111894079-111913289:-|nuORF	ENST00000528599.1_1_6:111894079-111913289:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.76934814453125	2	480.766709	959.518865	0.11463	5.511E-05	-0.42615	-0.00020488	-0.31152	-0.00014977	480.76637305248687	56.948	2.4306	53.603	52.668	55.098	-3.3449					134	47	4	0	0	0	0.37135	1	3675	3675		54.776	1.4249	1	828540			61777	1230	50953	51002	67820	67820					0.03748606991609904
VPRPTKSSF	9	Unmodified	_VPRPTKSSF_					0	0	0		ENST00000401044.7_1_1:59134235-59156019:-|nuORF;ENSG00000162601|ENST00000472487|MYSM1;nc|ENSG00000162601|Q5VVJ2-2|MYSM1	ENST00000401044.7_1_1:59134235-59156019:-|nuORF	ENST00000401044.7_1_1:59134235-59156019:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.7872009277344	2	509.787641	1017.56073	-1.1318	-0.00057695	0.2985	0.00015217	-0.83325	-0.00042478	509.78787191240446	48.635	1.2452	45.528	44.988	46.233	-3.1077					47	23	3	0	0	0	0.16562	2	2703	2691;2703		82.241	27.464	1	581050			61778	6200	50954	51003	67821;67822	67822					0.052651626801548446
VPRPTKSSF	9	Unmodified	_VPRPTKSSF_					0	0	0		ENST00000401044.7_1_1:59134235-59156019:-|nuORF;ENSG00000162601|ENST00000472487|MYSM1;nc|ENSG00000162601|Q5VVJ2-2|MYSM1	ENST00000401044.7_1_1:59134235-59156019:-|nuORF	ENST00000401044.7_1_1:59134235-59156019:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	509.787641	1017.56073	-0.84284	-0.00042967	0.43413	0.00022131	-0.40872	-0.00020836	509.7877201739316	48.167	1.1444	45.458	45.034	46.178	-2.7097	-0.034932	7.8456E-05	NaN	82.241	43	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134260			61779	6200	50954	51003							0.052651626801548446
VPRPVLRAL	9	Unmodified	_VPRPVLRAL_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.8385009765625	2	510.837468	1019.66038	-0.38541	-0.00019688	-0.19758	-0.00010093	-0.58298	-0.00029781	510.8373417068363	76.39	2.3514	73.451	73.128	75.479	-2.9389					135	48	4	0	0	0	0.29717	1	6061	6061		63.306	7.8021	1	2937500			61780	1827	50955	51004	67823	67823					0.15134025084751102
VPRPVLRALSF	11	Unmodified	_VPRPVLRALSF_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	OvCa9_classI_Rep2	2	418.92755126953125	3	418.927552	1253.76083	-0.73942	-0.00030976	0.64071	0.00026841	-0.098707	-4.1351E-05	418.92781017813985	101.87	2.6683	101.1	100.77	103.43	-0.764					149	53	5	0	0	0	0.39136	7	9365	9349;9354;9359;9365;9371;9378;9384		61.765	36.639	1	1200500			61781	1827	50956	51005	67824;67825;67826;67827;67828;67829;67830	67827					0.1440963734773959
VPRPVLRALSF	11	Unmodified	_VPRPVLRALSF_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	OvCa9_classI_Rep2	2	627.887451171875	2	627.88769	1253.76083	-1.8385	-0.0011544	1.3327	0.00083681	-0.50572	-0.00031754	627.8884897156887	101.87	2.0264	101.11	100.77	102.79	-0.764					100	40	3	0	0	0	0.13263	2	9355	9355;9361		72.879	18.157	1	921420			61782	1827	50956	51005	67831;67832	67831					0.1440963734773959
VPRPVLRALSF	11	Unmodified	_VPRPVLRALSF_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	OvCa9_classI_Rep3	3	418.927978515625	3	418.927552	1253.76083	0.79616	0.00033353	-1.2289	-0.00051482	-0.43274	-0.00018129	418.92703805067737	103.36	2.7131	101.93	101.55	104.27	-1.4347					157	51	5	0	0	0	0.29709	10	7145	7140;7145;7150;7158;7164;7170;7177;7183;7189;7195		68.626	44.394	1	1226400			61783	1827	50956	51005	67833;67834;67835;67836;67837;67838;67839;67840;67841;67842	67834					0.1440963734773959
VPRPVLRALSF	11	Unmodified	_VPRPVLRALSF_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	OvCa9_classI_Rep3	3	627.888427734375	2	627.88769	1253.76083	0.65254	0.00040972	-0.92024	-0.00057781	-0.2677	-0.00016808	627.8870607847418	103.34	2.5585	101.9	101.61	104.16	-1.4347					126	48	5	0	0	0	0.32052	7	7172	7146;7154;7159;7165;7172;7178;7184		49.536	23.656	1	1060400			61784	1827	50956	51005	67843;67844;67845;67846;67847;67848;67849	67847					0.1440963734773959
VPRPVLRALSF	11	Unmodified	_VPRPVLRALSF_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	OvCa9_classI_Rep4_	4	627.8875122070312	2	627.88769	1253.76083	-0.40237	-0.00025264	0.21343	0.00013401	-0.18895	-0.00011864	627.8878110583072	104.1	2.1009	101.98	101.64	103.74	-2.1192					118	40	5	0	0	0	0.39136	6	9411	9402;9411;9423;9435;9447;9462		44.377	9.7679	1	1107000			61785	1827	50956	51005	67850;67851;67852;67853;67854;67855	67851					0.1440963734773959
VPRPVLRALSF	11	Unmodified	_VPRPVLRALSF_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;ENST00000555324.1_1_14:94545323-94547480:-|nuORF	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	OvCa9_classI_Rep4_	4	418.9268493652344	3	418.927552	1253.76083	-0.84863	-0.00035552	0.6615	0.00027712	-0.18714	-7.8398E-05	418.927810716126	104.15	2.7626	102.03	101.64	104.4	-2.1192					150	53	5	0	0	0	0.32052	7	9422	9410;9422;9434;9446;9461;9473;9486		66.92	39.873	1	1181400			61786	1827	50956	51005	67856;67857;67858;67859;67860;67861;67862	67857					0.1440963734773959
VPRQPTVTSV	10	Unmodified	_VPRQPTVTSV_					0	0	0		ENSG00000163110|ENST00000317968|PDLIM5	ENSG00000163110|ENST00000317968|PDLIM5	ENSG00000163110|ENST00000317968|PDLIM5	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.31298828125	2	542.31148	1082.60841	-0.40255	-0.00021831	0.29875	0.00016202	-0.1038	-5.6292E-05	542.3116613212275	64.365	1.2627	60.89	60.49	61.753	-3.475					77	25	4	0	0	0	0.083353	2	4579	4568;4579		117.81	30.115	1	1197600			61787	6268	50957	51006	67863;67864	67864					0.07040816880339662
VPRQPTVTSV	10	Unmodified	_VPRQPTVTSV_					0	0	0		ENSG00000163110|ENST00000317968|PDLIM5	ENSG00000163110|ENST00000317968|PDLIM5	ENSG00000163110|ENST00000317968|PDLIM5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	542.31148	1082.60841	-1.6772	-0.00090955	1.5744	0.00085381	-0.10278	-5.5738E-05	542.3125776321714	63.66	0.83498	60.916	60.586	61.421	-2.7444	0.012836	0.0010415	NaN	117.81	49	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	242590			61788	6268	50957	51006							0.07040816880339662
VPRQVHIPP	9	Unmodified	_VPRQVHIPP_					0	0	0		ENSG00000160401|ENST00000373295|CFAP157	ENSG00000160401|ENST00000373295|CFAP157	ENSG00000160401|ENST00000373295|CFAP157	MULTI-MSMS	OvCa9_classI_Rep2	2	521.8118896484375	2	521.811451	1041.60835	-0.83564	-0.00043605	3.6163	0.001887	2.7806	0.001451	521.8134554363941	67.923	3.082	65.262	64.842	67.924	-2.661					124	61	3	0	0	0	0.65476	1	5343	5343		25.45	1.2474	1	4500900			61789	6063	50958	51007	67865	67865					0.08920861671003877
VPRRHRYKKKW	11	Unmodified	_VPRRHRYKKKW_					0	0	0		ENSG00000117481|ENST00000474844|NSUN4;nc|ENSG00000117481|Q96CB9-2|NSUN4;ENST00000472157.1_1_1:46806507-46807258:+|nuORF	ENSG00000117481|ENST00000474844|NSUN4	ENSG00000117481|ENST00000474844|NSUN4	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.8067016601562	3	518.647782	1552.92152	-0.040078	-2.0787E-05	2.8631	0.0014849	2.823	0.0014641	518.6492266769554	89.296	0.59045	87.165	86.798	87.388	-2.1309					14	11	2	0	0	0	0.026488	1	5462	5462		6.3209	0.6221	1	22765			61790	3257	50959	51008	67866	67866					0.16717404784458267
VPRRHRYKKKW	11	Unmodified	_VPRRHRYKKKW_					0	0	0		ENSG00000117481|ENST00000474844|NSUN4;nc|ENSG00000117481|Q96CB9-2|NSUN4;ENST00000472157.1_1_1:46806507-46807258:+|nuORF	ENSG00000117481|ENST00000474844|NSUN4	ENSG00000117481|ENST00000474844|NSUN4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.80810546875	3	518.647782	1552.92152	0.14003	7.2624E-05	3.7724	0.0019566	3.9125	0.0020292	518.6495171068649	89.434	0.49466	86.85	86.695	87.189	-2.5843					12	9	2	0	0	0	0.026497	1	7683	7683		6.001	4.5823	1	22500			61791	3257	50959	51008	67867	67867					0.16717404784458267
VPRRPRVL	8	Unmodified	_VPRRPRVL_					0	0	0		ENST00000368408.3_1_1:155051524-155058895:+|nuORF	ENST00000368408.3_1_1:155051524-155058895:+|nuORF	ENST00000368408.3_1_1:155051524-155058895:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.7620544433594	2	496.827435	991.640317	-0.71036	-0.00035293	-2.5611	-0.0012724	-3.2715	-0.0016254	496.8265573612993	73.976	0.18777	70.745	70.628	70.816	-3.2308					5	3	2	0	0	0	0.028476	1	5767	5767		8.2313	0	1	59442			61792	10869	50960	51009	67868	67868					0.14416274144798535
VPRRRAPLL	9	Unmodified	_VPRRRAPLL_					0	0	0		ENST00000563854.1_2_16:1820656-1821336:-|nuORF	ENST00000563854.1_2_16:1820656-1821336:-|nuORF	ENST00000563854.1_2_16:1820656-1821336:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	539.3536376953125	2	539.353817	1076.69308	2.2939	0.0012372	-2.3996	-0.0012943	-0.10574	-5.7029E-05	539.3523735364151	63.128	1.3441	60.094	59.756	61.1	-3.0339					58	26	3	0	0	0	0.6653	1	2343	2343		24.203	4.8428	1	102560			61793	13793	50961	51010	67869	67869					0.15780232207612244
VPRRVIHFV	9	Unmodified	_VPRRVIHFV_					0	0	0		nc|ENSG00000151327|Q8N128|FAM177A1;ENSG00000151327|ENST00000280987|FAM177A1	nc|ENSG00000151327|Q8N128|FAM177A1	nc|ENSG00000151327|Q8N128|FAM177A1	MULTI-MSMS	OvCa9_classI_Rep3	3	561.845458984375	2	561.848368	1121.68218	-5.3491	-0.0030054	0.54054	0.0003037	-4.8086	-0.0027017	561.8485776281088	152.58	1.5019	151.61	151.19	152.7	-0.97299					81	30	4	0	0	0	0.6653	1	13034	13034		24.203	0.68005	1	218830			61794	5546	50962	51011	67870	67870					0.12620829833326752
VPRSASVLL	9	Unmodified	_VPRSASVLL_					0	0	0		ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	MULTI-MSMS	OvCa9_classI_Rep2	2	471.29254150390625	2	471.292559	940.570566	0.33373	0.00015729	-0.47934	-0.00022591	-0.14561	-6.8623E-05	471.2921963660587	81.554	1.3417	79.906	79.514	80.856	-1.6485					81	25	4	0	0	0	0.37135	1	6935	6935		54.776	1.4249	1	678110			61795	6692	50963	51012	67871	67871					0.09790350685523208
VPRSASVLL	9	Unmodified	_VPRSASVLL_					0	0	0		ENSG00000166557|ENST00000299705|TMED3;nc|ENSG00000166557|Q9Y3Q3-2|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.29327392578125	2	471.292559	940.570566	0.20034	9.4418E-05	-0.50937	-0.00024006	-0.30903	-0.00014564	471.29218878217125	82.54	1.368	79.857	79.489	80.857	-2.6829					80	27	4	0	0	0	0.3076	1	6835	6835		62.107	1.1355	1	1141500			61796	6692	50963	51012	67872	67872					0.09790350685523208
VPRSPFKVKVL	11	Unmodified	_VPRSPFKVKVL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.H2029Qfs*32|1|0.9|ENSG00000196924|chrX:154353130-154353140|TGCTGGCCACG/-|frameshift_variant;ENST00000490936.5_1_X:153579531-153588003:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OvCa9_classI_Rep2	2	423.9381408691406	3	423.939569	1268.79688	0.22468	9.5253E-05	-0.44261	-0.00018764	-0.21793	-9.2389E-05	423.93936295129834	79.002	1.7188	77.263	76.855	78.574	-1.7398					100	33	4	0	0	0	0.16394	3	6642	6628;6636;6642		84.817	37.59	1	391880			61797	8659	50964	51013	67873;67874;67875	67875					0.17323094524590488
VPRSPFKVKVL	11	Unmodified	_VPRSPFKVKVL_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.H2029Qfs*32|1|0.9|ENSG00000196924|chrX:154353130-154353140|TGCTGGCCACG/-|frameshift_variant;ENST00000490936.5_1_X:153579531-153588003:-|nuORF	nc|ENSG00000196924|P21333-2|FLNA	nc|ENSG00000196924|P21333-2|FLNA	MULTI-MSMS	OvCa9_classI_Rep4_	4	423.9401550292969	3	423.939569	1268.79688	-0.74511	-0.00031588	0.44378	0.00018813	-0.30133	-0.00012775	423.93974120654525	80.337	1.5685	77.626	77.22	78.788	-2.7106					89	31	4	0	0	0	0.32052	1	6562	6562		66.92	8.674	1	398430			61798	8659	50964	51013	67876	67876					0.17323094524590488
VPRSSSMVL	9	Oxidation (M)	_VPRSSSM(Oxidation (M))VL_		VPRSSSM(1)VL		VPRSSSM(72)VL	0	0	1		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.26763916015625	2	496.265684	990.516816	0.096742	4.801E-05	-0.30045	-0.0001491	-0.20371	-0.00010109	496.26531883907927	56.638	1.8272	53.343	52.718	54.545	-3.2944					107	35	5	0	0	0	0.22621	1	3643	3643		71.877	13.096	1	946680			61799	4496	50965	51014	67877	67877		144			0.021178101915097614
VPRSSSMVL	9	Oxidation (M)	_VPRSSSM(Oxidation (M))VL_					0	0	1		nc|ENSG00000136536|Q9H992-2|MARCHF7;ENSG00000136536|ENST00000409175|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	nc|ENSG00000136536|Q9H992-2|MARCHF7	MULTI-MATCH	OvCa9_classI_Rep2	2		2	496.265684	990.516816	-0.79797	-0.00039601	0.76716	0.00038071	-0.030817	-1.5293E-05	496.2657408447266	56.051	1.9329	53.247	52.582	54.515	-2.804	-0.04826	0.00056915	NaN	71.877	119	38	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198220			61800	4496	50965	51014				144			0.021178101915097614
VPRTFSTQI	9	Unmodified	_VPRTFSTQI_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-2|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-MSMS	OvCa9_classI_Rep3	3	524.7930908203125	2	524.792924	1047.57129	-0.80965	-0.0004249	-0.048157	-2.5272E-05	-0.85781	-0.00045017	524.7927403803037	78.228	1.5974	75.875	75.596	77.193	-2.3527					60	31	2	0	0	0	0.11471	1	4147	4147		93.195	13.744	1	1037800			61801	8262	50966	51015	67878	67878					0.049411453345555856
VPRTFSTQI	9	Unmodified	_VPRTFSTQI_					0	0	0		nc|ENSG00000185567|Q8IVF2-3|AHNAK2;ENSG00000185567|ENST00000333244|AHNAK2;nc|ENSG00000185567|Q8IVF2-2|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	nc|ENSG00000185567|Q8IVF2-3|AHNAK2	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.79296875	2	524.792924	1047.57129	-0.60368	-0.00031681	-0.68026	-0.00035699	-1.2839	-0.0006738	524.7923661007177	78.859	1.5723	76.108	75.853	77.425	-2.7514					59	32	2	0	0	0	0.16264	3	6365	6365;6374;6389		82.75	26.317	1	1044000			61802	8262	50966	51015	67879;67880;67881	67879					0.049411453345555856
VPRTHRLITL	10	Unmodified	_VPRTHRLITL_					0	0	0		nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;ENST00000464381.5_1_17:15935612-15961439:-|nuORF;ENST00000470782.5_1_17:15935612-15971511:-|nuORF	nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	MULTI-MSMS	OvCa9_classI_Rep2	2	402.58624267578125	3	402.587418	1204.74043	1.7232	0.00069375	-1.6323	-0.00065714	0.090935	3.6609E-05	402.5866891850357	66.627	1.6865	63.932	63.467	65.154	-2.6958					96	33	4	0	0	0	0.49595	3	5197	5179;5190;5197		54.722	21.91	1	322970			61803	4891	50967	51016	67882;67883;67884	67884					0.146244666879511
VPRTHRLITL	10	Unmodified	_VPRTHRLITL_					0	0	0		nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;ENST00000464381.5_1_17:15935612-15961439:-|nuORF;ENST00000470782.5_1_17:15935612-15971511:-|nuORF	nc|ENSG00000141027|O75376-2|NCOR1	nc|ENSG00000141027|O75376-2|NCOR1	MULTI-MSMS	OvCa9_classI_Rep3	3	402.58746337890625	3	402.587418	1204.74043	1.9558	0.00078737	-1.8776	-0.00075588	0.078216	3.1489E-05	402.5866179428177	67.03	2.5083	64.142	63.83	66.339	-2.8873					141	49	4	0	0	0	0.47142	13	2807	2787;2791;2801;2807;2813;2819;2826;2832;2838;2844;2851;2857;2871		58.23	23.473	1	637180			61804	4891	50967	51016	67885;67886;67887;67888;67889;67890;67891;67892;67893;67894;67895;67896;67897	67888					0.146244666879511
VPRTLTSIL	9	Unmodified	_VPRTLTSIL_					0	0	0		nc|ENSG00000189195|Q5XKL5-4|BTBD8;nc|ENSG00000189195|Q5XKL5|BTBD8	nc|ENSG00000189195|Q5XKL5-4|BTBD8	nc|ENSG00000189195|Q5XKL5-4|BTBD8	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.81512451171875	2	500.313492	998.612431	1.0798	0.00054023	-1.5065	-0.0007537	-0.42668	-0.00021347	500.31266361849487	129.33	2.2681	127.88	127.55	129.81	-1.4565					119	45	5	0	0	0	0.48047	1	12548	12548		44.377	3.599	1	1004600			61805	15235	50968	51017	67898	67898					0.1130690637405678
VPRTQQQV	8	Unmodified	_VPRTQQQV_					0	0	0			REV__nc|ENSG00000152672|Q8N1N0-2|CLEC4F	REV__nc|ENSG00000152672|Q8N1N0-2|CLEC4F	MULTI-MSMS	OvCa99_classI_Rep5	1	478.2720947265625	2	478.269616	954.524678	0.73264	0.0003504	3.9999	0.001913	4.7325	0.0022634	478.2715319013167	74.253	1.7299	74.253	73.678	75.407	0					122	43	5	0	0	0	0.72896	1	7307	7307		37.159	1.9584	1	20838000	+		61806	20298	50969	51018	67899	67899					0.045597055032772005
VPRTRAAV	8	Unmodified	_VPRTRAAV_					0	0	0			REV__KANSL1|p.Q968Sfs*46|1|0.43|ENSG00000120071|chr17:46032235-46032235|G/-|frameshift_variant	REV__KANSL1|p.Q968Sfs*46|1|0.43|ENSG00000120071|chr17:46032235-46032235|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	435.2467346191406	2	435.269419	868.524284	-0.60623	-0.00026387	1.1172	0.00048627	0.51093	0.00022239	435.2695913636321	43.82	0.70187	40.813	40.536	41.238	-3.0074					36	13	4	0	0	0	0.028476	1	2175	2175		56.721	0	1	62613	+		61807	18483	50970	51019	67900	67900					0.08476330574080748
VPRTRHHV	8	Unmodified	_VPRTRHHV_					0	0	0		ENST00000473661.5_1_3:9867594-9876502:+|nuORF	ENST00000473661.5_1_3:9867594-9876502:+|nuORF	ENST00000473661.5_1_3:9867594-9876502:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2910461425781	2	501.291217	1000.56788	-1.4695	-0.00073667	-0.019075	-9.562E-06	-1.4886	-0.00074623	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.75426	1	11222	11222		18.324	0	1	97838			61808	12417	50971	51020	67901	67901					0.06761940071226036
VPRTRLAS	8	Unmodified	_VPRTRLAS_					0	0	0		ENSG00000225526|ENST00000564146|MKRN2OS	ENSG00000225526|ENST00000564146|MKRN2OS	ENSG00000225526|ENST00000564146|MKRN2OS	MULTI-MSMS	OvCa9_classI_Rep4_	4	450.274658203125	2	450.274701	898.534849	-1.3926	-0.00062703	1.3713	0.00061744	-0.0213	-9.5907E-06	450.2752805302911	148.27	1.3965	146.84	146.48	147.87	-1.435					87	28	5	0	0	0	0.745	1	14591	14591		29.15	0	1	541000			61809	9262	50972	51021	67902	67902					0.08152313228515595
VPRVGLGL	8	Unmodified	_VPRVGLGL_					0	0	0		ENSG00000146859|ENST00000275767|TMEM140	ENSG00000146859|ENST00000275767|TMEM140	ENSG00000146859|ENST00000275767|TMEM140	MULTI-MSMS	OvCa9_classI_Rep4_	4	405.7641296386719	2	405.763438	809.512323	0.96141	0.00039011	-0.85263	-0.00034597	0.10878	4.4141E-05	405.7629820127453	91.579	1.1639	89.036	88.76	89.924	-2.5425					48	22	3	0	0	0	0.44269	1	7924	7924		83.287	8.7706	1	272650			61810	5314	50973	51022	67903	67903					0.09994713830894852
VPRVGLGL	8	Unmodified	_VPRVGLGL_					0	0	0		ENSG00000146859|ENST00000275767|TMEM140	ENSG00000146859|ENST00000275767|TMEM140	ENSG00000146859|ENST00000275767|TMEM140	MULTI-MATCH	OvCa9_classI_Rep2	2		2	405.763438	809.512323	3.0356	0.0012317	-2.8286	-0.0011477	0.20696	8.3978E-05	405.76217455963626	90.339	1.2073	89.037	88.68	89.888	-1.302	0.010103	-0.00090264	NaN	83.287	49	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	189920			61811	5314	50973	51022							0.09994713830894852
VPRVGLGL	8	Unmodified	_VPRVGLGL_					0	0	0		ENSG00000146859|ENST00000275767|TMEM140	ENSG00000146859|ENST00000275767|TMEM140	ENSG00000146859|ENST00000275767|TMEM140	MULTI-MATCH	OvCa9_classI_Rep3	3		2	405.763438	809.512323	0.17327	7.0305E-05	-0.20163	-8.1812E-05	-0.028359	-1.1507E-05	405.763251635398	91.032	1.3621	89.007	88.727	90.089	-2.0241	-0.01954	0.0012292	NaN	83.287	60	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	319560			61812	5314	50973	51022							0.09994713830894852
VPRVRAAS	8	Unmodified	_VPRVRAAS_					0	0	0		ENST00000602806.1_1_1:226271519-226271639:+|nuORF	ENST00000602806.1_1_1:226271519-226271639:+|nuORF	ENST00000602806.1_1_1:226271519-226271639:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	428.2615966796875	2	428.261594	854.508634	-2.1797	-0.00093349	2.171	0.00092976	-0.0087153	-3.7324E-06	428.2624599299376	144.02	1.6837	143.79	143.2	144.88	-0.22697					114	33	5	0	0	0	0.73938	1	14493	14493		31.955	12.595	1	330270			61813	14252	50974	51023	67904	67904					0.0755604405703707
VPSAGLRIPRQ	11	Unmodified	_VPSAGLRIPRQ_					0	0	0		ENST00000321895.6_1_3:49201648-49203753:-|nuORF	ENST00000321895.6_1_3:49201648-49203753:-|nuORF	ENST00000321895.6_1_3:49201648-49203753:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	597.358154296875	2	597.359296	1192.70404	-5.052	-0.0030179	4.0389	0.0024127	-1.0131	-0.00060517	597.3615454958483	157.14	0.96848	155.97	155.65	156.62	-1.1707					64	22	4	0	0	0	0.72459	1	13574	13574		20.947	1.8434	1	132000			61814	10379	50975	51024	67905	67905					0.11539589791209437
VPSFLQEGAV	10	Unmodified	_VPSFLQEGAV_					0	0	0		ENST00000492632.5_1_20:9288449-9449247:+|nuORF;nc|ENSG00000101333|Q15147|PLCB4;nc|ENSG00000101333|Q15147-5|PLCB4;nc|ENSG00000101333|Q15147-4|PLCB4;ENSG00000101333|ENST00000378473|PLCB4	ENST00000492632.5_1_20:9288449-9449247:+|nuORF	ENST00000492632.5_1_20:9288449-9449247:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.7887573242188	2	523.779482	1045.54441	-2.5198	-0.0013198	-1.1365	-0.00059526	-3.6563	-0.0019151	523.7784370085535	49.708	0.83256	46.567	46.352	47.184	-3.1416					27	15	2	0	0	0	0.026635	1	2829	2829		24.519	11.707	1	92178			61815	2165	50976	51025	67906	67906					0.023460367233838042
VPSFLQEGAV	10	Unmodified	_VPSFLQEGAV_					0	0	0		ENST00000492632.5_1_20:9288449-9449247:+|nuORF;nc|ENSG00000101333|Q15147|PLCB4;nc|ENSG00000101333|Q15147-5|PLCB4;nc|ENSG00000101333|Q15147-4|PLCB4;ENSG00000101333|ENST00000378473|PLCB4	ENST00000492632.5_1_20:9288449-9449247:+|nuORF	ENST00000492632.5_1_20:9288449-9449247:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	523.779482	1045.54441	-0.78245	-0.00040983	-0.73619	-0.0003856	-1.5186	-0.00079543	523.7777947291258	49.484	0.59285	46.724	46.424	47.017	-2.7603	0.07841	0.00033522	NaN	24.519	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12707			61816	2165	50976	51025							0.023460367233838042
VPSFTQQILCP	11	Unmodified	_VPSFTQQILCP_					0	0	0		nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1	nc|ENSG00000166889|Q86TB9-2|PATL1	nc|ENSG00000166889|Q86TB9-2|PATL1	MULTI-MSMS	OvCa9_classI_Rep4_	4	616.8215942382812	2	616.820824	1231.62709	-0.68259	-0.00042104	1.2398	0.00076476	0.55726	0.00034373	616.8212147168359	145	0.89395	143.56	143.25	144.15	-1.4357					39	16	4	0	0	0	0.60323	1	14232	14232		44.377	0.7264	1	70686			61817	6731	50977	51026	67907	67907					0.020546104599134196
VPSFTQQILCP	11	Unmodified	_VPSFTQQILCP_					0	0	0		nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1	nc|ENSG00000166889|Q86TB9-2|PATL1	nc|ENSG00000166889|Q86TB9-2|PATL1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	616.820824	1231.62709	-2.4565	-0.0015153	2.9491	0.0018191	0.49254	0.00030381	616.8223955530575	143.94	0.59251	143.72	143.5	144.09	-0.22696	0.078489	0.0008226	NaN	44.377	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33347			61818	6731	50977	51026							0.020546104599134196
VPSFTQQILCP	11	Unmodified	_VPSFTQQILCP_					0	0	0		nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1	nc|ENSG00000166889|Q86TB9-2|PATL1	nc|ENSG00000166889|Q86TB9-2|PATL1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	616.820824	1231.62709	-1.9223	-0.0011857	2.3637	0.001458	0.44136	0.00027224	616.8219691251431	144.61	0.84222	143.64	143.35	144.19	-0.97301	-0.0018808	0.0001004	NaN	44.377	38	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60520			61819	6731	50977	51026							0.020546104599134196
VPSGSVGPRV	10	Unmodified	_VPSGSVGPRV_					0	0	0			REV__ENST00000593156.1_1_17:73913837-73918141:-|nuORF	REV__ENST00000593156.1_1_17:73913837-73918141:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.7748718261719	2	477.771991	953.529429	0.3308	0.00015805	-0.64723	-0.00030923	-0.31643	-0.00015118	477.771606475266	56.49	1.6751	53.196	52.769	54.444	-3.2944					71	32	4	0	0	0	0.6349	1	3635	3635		37.812	1.3648	1	1084300	+		61820	22746	50978	51027	67908	67908					0.05080589646047429
VPSHKLML	8	Unmodified	_VPSHKLML_					0	0	0		AGFG1-TAF1A|1|fusion;nc|ENSG00000143498|Q15573-2|TAF1A;ENSG00000143498|ENST00000352967|TAF1A	AGFG1-TAF1A|1|fusion	AGFG1-TAF1A|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	462.7698059082031	2	462.770406	923.526258	-0.7448	-0.00034467	-3.3255	-0.0015389	-4.0703	-0.0018836	462.7687561598727	65.998	2.2558	65.998	65.586	67.842	0					122	56	4	0	0	0	0.03224	4	6073	6073;6101;6130;6162		183.89	55.079	1	15179000			61821	48	50979	51028	67909;67910;67911;67912	67909					0.06143623267666953
VPSLELGLP	9	Unmodified	_VPSLELGLP_					0	0	0		ENSG00000178597|ENST00000319098|PSAPL1	ENSG00000178597|ENST00000319098|PSAPL1	ENSG00000178597|ENST00000319098|PSAPL1	MULTI-MSMS	OvCa9_classI_Rep2	2	462.7722473144531	2	462.773668	923.532783	-1.9809	-0.0009167	-1.2212	-0.00056512	-3.202	-0.0014818	462.77307246916536	37.809	0.68848	35.1	34.781	35.469	-2.7097					48	13	5	0	0	0	0.52083	1	1709	1709		40.573	0	1	1223600			61822	7764	50980	51029	67913	67913					0.06795839700043871
VPSLRDPLRVN	11	Unmodified	_VPSLRDPLRVN_					0	0	0			REV__FAT2|p.E1253D|1|0.05|ENSG00000086570|chr5:151554548-151554548|C/A|missense_variant	REV__FAT2|p.E1253D|1|0.05|ENSG00000086570|chr5:151554548-151554548|C/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3692626953125	2	633.369861	1264.72517	-4.1446	-0.0026251	2.9938	0.0018962	-1.1508	-0.00072888	633.3716506579397	149.94	3.0119	148.99	147.85	150.86	-0.9512					218	59	5	0	0	0	0.72485	1	12715	12715		17.468	0.99486	1	281260	+		61823	28129	50981	51030	67914	67914					0.1033955510006308
VPSLRDPLRVN	11	Unmodified	_VPSLRDPLRVN_					0	0	0			REV__FAT2|p.E1253D|1|0.05|ENSG00000086570|chr5:151554548-151554548|C/A|missense_variant	REV__FAT2|p.E1253D|1|0.05|ENSG00000086570|chr5:151554548-151554548|C/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3689575195312	2	633.369861	1264.72517	-4.8824	-0.0030923	3.9881	0.002526	-0.89421	-0.00056637	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.71498	1	13145	13145		24.519	1.9395	1	765700	+		61824	28129	50981	51030	67915	67915					0.1033955510006308
VPSNLCISQK	10	Unmodified	_VPSNLCISQK_					0	0	0			REV__ENST00000467434.5_1_9:115216373-115221761:+|nuORF	REV__ENST00000467434.5_1_9:115216373-115221761:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	544.5974731445312	2	544.792066	1087.56958	-0.65418	-0.00035639	0.22621	0.00012324	-0.42797	-0.00023316	544.7920415375564	21.102	0.66307	19.763	19.456	20.119	-1.3386					21	13	2	0	0	0	0.02706	1	158	158		30.318	0	1	34198	+		61825	26207	50982	51031	67916	67916					0.029297682542846815
VPSPGRCD	8	Unmodified	_VPSPGRCD_					0	0	0			REV__ENSG00000187942|ENST00000344642|LDLRAD2	REV__ENSG00000187942|ENST00000344642|LDLRAD2	MULTI-MSMS	OvCa99_classI_Rep5	1	415.69464111328125	2	415.694895	829.375237	-0.079872	-3.3202E-05	-3.7053	-0.0015403	-3.7852	-0.0015735	415.69322100430526	49.54	0.74369	49.54	49.287	50.031	0					39	16	3	0	0	0	0.62934	1	3703	3703		57.811	5.5121	1	1491100	+		61826	22675	50983	51032	67917	67917					-0.046275631109892856
VPSPPLSK	8	Unmodified	_VPSPPLSK_					0	0	0			REV__ENSG00000154358|ENST00000680850|OBSCN	REV__ENSG00000154358|ENST00000680850|OBSCN	MULTI-MSMS	OvCa9_classI_Rep2	2	412.7462463378906	2	412.747453	823.480354	0.89602	0.00036983	-3.8761	-0.0015999	-2.9801	-0.00123	412.745727074971	134.3	1.3763	134.07	133.07	134.44	-0.22697					63	27	4	0	0	0	0.74394	1	13258	13258		13.775	0	1	259910	+		61827	20380	50984	51033	67918	67918					0.061553013571028714
VPSQHLKVVSV	11	Unmodified	_VPSQHLKVVSV_					0	0	0			REV__chr12:77024185-77025558|408|17.47|0.92|4.25|-|0|E2F7,E2F7|1	REV__chr12:77024185-77025558|408|17.47|0.92|4.25|-|0|E2F7,E2F7|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	596.7997436523438	2	596.856055	1191.69756	-0.76778	-0.00045825	0.21822	0.00013024	-0.54957	-0.00032801	596.856083157061	77.62	1.0466	75.83	75.519	76.566	-1.7894					51	19	4	0	0	0	0.025814	1	6479	6479		27.047	12.91	1	129450	+		61828	15894	50985	51034	67919	67919					0.10937651839844875
VPSQHLKVVSV	11	Unmodified	_VPSQHLKVVSV_					0	0	0			REV__chr12:77024185-77025558|408|17.47|0.92|4.25|-|0|E2F7,E2F7|1	REV__chr12:77024185-77025558|408|17.47|0.92|4.25|-|0|E2F7,E2F7|1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	596.856055	1191.69756	0.68011	0.00040593	-1.1927	-0.00071186	-0.51258	-0.00030593	596.8553291020124	78.53	1.3417	76.178	75.8	77.142	-2.3527	0.14954	-0.00076769	NaN	20.837	63	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166560	+		61829	15894	50985	51034							0.10937651839844875
VPSQHLKVVSV	11	Unmodified	_VPSQHLKVVSV_					0	0	0			REV__chr12:77024185-77025558|408|17.47|0.92|4.25|-|0|E2F7,E2F7|1	REV__chr12:77024185-77025558|408|17.47|0.92|4.25|-|0|E2F7,E2F7|1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	596.856055	1191.69756	0.42736	0.00025507	-1.2367	-0.00073811	-0.8093	-0.00048304	596.8551450027041	78.828	0.98955	76.076	75.714	76.703	-2.7514	0.048079	-0.00082017	NaN	20.837	46	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	179120	+		61830	15894	50985	51034							0.10937651839844875
VPSRSSSAL	9	Unmodified	_VPSRSSSAL_					0	0	0		RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.T5031Rfs*29|1|0.06|ENSG00000173821|chr17:80389261-80389262|-/TCGG|frameshift_variant;RNF213|p.G5057Vfs*8|1|0.18|ENSG00000173821|chr17:80389340-80389340|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.N2986Tfs*32|1|0.9|ENSG00000173821|chr17:80347289-80347289|G/-|frameshift_variant;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	452.2490539550781	2	452.248349	902.482145	-0.29292	-0.00013247	0.39177	0.00017718	0.098845	4.4703E-05	452.24831394899775	45.346	1.5642	42.308	41.919	43.484	-3.0385					69	29	3	0	0	0	0.27001	1	2303	2303		66.429	6.1353	1	376420			61831	7416;32788	50986	51035	67920	67920					0.027003103750644186
VPSRSSSAL	9	Unmodified	_VPSRSSSAL_					0	0	0		RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.T5031Rfs*29|1|0.06|ENSG00000173821|chr17:80389261-80389262|-/TCGG|frameshift_variant;RNF213|p.G5057Vfs*8|1|0.18|ENSG00000173821|chr17:80389340-80389340|G/-|frameshift_variant;nc|ENSG00000173821|Q63HN8|RNF213;ENSG00000173821|ENST00000582970|RNF213;nc|ENSG00000173821|Q63HN8-4|RNF213;RNF213|p.N2986Tfs*32|1|0.9|ENSG00000173821|chr17:80347289-80347289|G/-|frameshift_variant;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant;RNF213|p.I3463Tfs*74|1|0.13|ENSG00000173821|chr17:80353024-80353024|T/-|frameshift_variant	RNF213|p.V5030Tfs*30|1|0.14|ENSG00000173821|chr17:80389259-80389260|-/ACAC|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	452.248349	902.482145	2.0068	0.00090759	-1.776	-0.0008032	0.23081	0.00010438	452.2472971305966	45.186	1.0515	42.477	42.199	43.25	-2.7097	0.084413	-0.00098951	NaN	66.429	37	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61371			61832	7416;32788	50986	51035							0.027003103750644186
VPSSMQPVPE	10	Unmodified	_VPSSMQPVPE_					0	0	0			REV__ENSG00000132549|ENST00000357162|VPS13B	REV__ENSG00000132549|ENST00000357162|VPS13B	MULTI-MSMS	OvCa9_classI_Rep3	3	535.7635498046875	2	535.762975	1069.5114	0.74916	0.00040137	-0.86876	-0.00046545	-0.11961	-6.4081E-05	535.76248491945	78.562	2.0989	76.209	75.85	77.949	-2.3527					134	41	5	0	0	0	0.1722	2	4182	4182;4194		98.629	1.1567	1	1834000	+		61833	19085	50987	51036	67921;67922	67921					-0.020579133909677694
VPSSSYIK	8	Unmodified	_VPSSSYIK_					0	0	0		nc|ENSG00000058668|P23634-8|ATP2B4;nc|ENSG00000058668|P23634|ATP2B4	nc|ENSG00000058668|P23634-8|ATP2B4	nc|ENSG00000058668|P23634-8|ATP2B4	MULTI-MSMS	OvCa99_classI_Rep5	1	440.7411193847656	2	440.742368	879.470183	1.1523	0.00050785	-4.0914	-0.0018032	-2.9391	-0.0012954	440.74042771006077	30.67	0.78147	30.67	30.483	31.264	0					24	15	3	0	0	0	0.61758	1	1199	1199		60.294	2.4827	1	336490			61834	14878	50988	51037	67923	67923					0.02562693631853108
VPSTERMVL	9	Oxidation (M)	_VPSTERM(Oxidation (M))VL_		VPSTERM(1)VL		VPSTERM(75)VL	0	0	1		ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF	ENSG00000108312|ENST00000436088|UBTF;nc|ENSG00000108312|P17480-2|UBTF	nc|ENSG00000108312|P17480-2|UBTF	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.2803955078125	2	524.278792	1046.54303	-0.92062	-0.00048266	0.177	9.2799E-05	-0.74362	-0.00038987	524.278789793798	63.076	2.1832	59.601	58.649	60.833	-3.475					68	44	2	0	0	0	0.2077	1	4420	4420		75.043	18.322	1	377140			61835	2645;14948	50989	51038	67924	67924		86			0.021620793629836044
VPSTIISI	8	Unmodified	_VPSTIISI_					0	0	0		tr|A0A7D7A008|A0A7D7A008_9CLOTSporematurationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22195PE=4SV=1	tr|A0A7D7A008|A0A7D7A008_9CLOTSporematurationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22195PE=4SV=1	tr|A0A7D7A008|A0A7D7A008_9CLOTSporematurationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22195PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	415.256591796875	2	415.255111	828.49567	-0.142	-5.8968E-05	0.82827	0.00034394	0.68626	0.00028497	415.2552479200656	65.928	1.0327	65.928	65.586	66.619	0					63	25	3	0	0	0	0.74361	1	6084	6084		29.842	0	1	1783000			61836	35981	50990	51039	67925	67925					0.07456168154294573
VPSTLPTWA	9	Unmodified	_VPSTLPTWA_					0	0	0		ENST00000321867.5_1_12:132406822-132407029:+|nuORF	ENST00000321867.5_1_12:132406822-132407029:+|nuORF	ENST00000321867.5_1_12:132406822-132407029:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	486.2659606933594	2	486.263468	970.512382	1.1545	0.00056141	2.1439	0.0010425	3.2985	0.0016039	486.26439439503525	61.985	2.2064	58.916	57.872	60.078	-3.0685					97	53	2	0	0	0	0.53957	1	2191	2191		38.806	1.647	1	48498			61837	10378	50991	51040	67926	67926					0.025946690402292916
VPSTPIIAKI	10	Unmodified	_VPSTPIIAKI_					0	0	0			REV__tr|A0A7D6VNU4|A0A7D6VNU4_9CLOTCitratetransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_14355PE=4SV=1	REV__tr|A0A7D6VNU4|A0A7D6VNU4_9CLOTCitratetransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_14355PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.8134765625	2	519.831517	1037.64848	-0.17943	-9.3273E-05	3.4152	0.0017753	3.2358	0.0016821	520.3344261758972	73.998	0.84099	72.027	71.745	72.586	-1.9711					21	15	2	0	0	0	0.027147	1	6085	6085		21.96	0	1	31054	+		61838	31205	50992	51041	67927	67927					0.13116363550898313
VPSYRVMEKIG	11	Unmodified	_VPSYRVMEKIG_					0	0	0		tr|A0A553SK42|A0A553SK42_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_18135PE=4SV=1	tr|A0A553SK42|A0A553SK42_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_18135PE=4SV=1	tr|A0A553SK42|A0A553SK42_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_18135PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	639.841552734375	2	639.847373	1277.68019	-5.8439	-0.0037392	0.10905	6.9779E-05	-5.7349	-0.0036694	639.8468923748331	161.98	0.93561	161.75	161.33	162.26	-0.22697					70	17	6	0	0	0	0.52474	1	16514	16514		51.528	3.5682	1	224130			61839	33575	50993	51042	67928	67928					0.05245988242540989
VPSYRVMEKIG	11	Unmodified	_VPSYRVMEKIG_					0	0	0		tr|A0A553SK42|A0A553SK42_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_18135PE=4SV=1	tr|A0A553SK42|A0A553SK42_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_18135PE=4SV=1	tr|A0A553SK42|A0A553SK42_NIACIN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_18135PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	639.847373	1277.68019	-6.1565	-0.0039392	1.2534	0.00080201	-4.9031	-0.0031372	640.3499777340022	163.66	0.79813	162.03	161.73	162.53	-1.6336	0.20197	0.00047657	NaN	51.528	88	21	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	459410			61840	33575	50993	51042							0.05245988242540989
VPTAIIILD	9	Unmodified	_VPTAIIILD_					0	0	0			REV__tr|A0A553SL78|A0A553SL78_NIACIPrephenatedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_20090PE=3SV=1	REV__tr|A0A553SL78|A0A553SL78_NIACIPrephenatedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_20090PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	477.79833984375	2	477.797143	953.579734	0.67479	0.00032241	-0.28844	-0.00013781	0.38635	0.0001846	477.7969029532152	160.66	0.90506	160.66	160.35	161.26	0					50	17	4	0	0	0	0.59983	1	18825	18825		31.955	0	1	238590	+		61841	30196	50994	51043	67929	67929					0.10108699251179587
VPTAPVAKPST	11	Unmodified	_VPTAPVAKPST_					0	0	0		sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1;sp|F5HC79|TRM1_HCMVMTripartiteterminasesubunit1OS=Humancytomegalovirus(strainMerlin)OX=295027GN=TRM1PE=3SV=1	sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1	sp|P16724|TRM1_HCMVATripartiteterminasesubunit1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRM1PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.2843627929688	2	534.308406	1066.60226	0.83097	0.00044399	-4.4519	-0.0023787	-3.621	-0.0019347	534.8073002414147	152.82	0.25279	152.82	152.64	152.9	0					8	5	2	0	0	0	0.026137	1	17896	17896		8.6937	2.381	1	13823			61842	32855	50995	51044	67930	67930					0.07162298648813703
VPTDGSHWLS	10	Unmodified	_VPTDGSHWLS_					0	0	0		nc|ENSG00000288705|P35504-2|UGT1A5;nc|ENSG00000288705|P35504|UGT1A5	nc|ENSG00000288705|P35504-2|UGT1A5	nc|ENSG00000288705|P35504-2|UGT1A5	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.2867431640625	2	549.764363	1097.51417	2.7242	0.0014976	4.2331	0.0023272	6.9573	0.0038249	549.7673879522675	116.02	0.22865	116.02	115.86	116.09	0					6	4	2	0	0	0	0.026891	1	13271	13271		31.53	1.0262	1	49126			61843	15390	50996	51045	67931	67931					-0.030683219418278895
VPTHRRPVQ	9	Unmodified	_VPTHRRPVQ_					0	0	0		nc|ENSG00000105364|Q9BYD3-2|MRPL4;ENSG00000105364|ENST00000253099|MRPL4;ENST00000588963.1_1_19:10363075-10363378:+|nuORF;ENST00000592071.1_1_19:10363204-10365325:+|nuORF	nc|ENSG00000105364|Q9BYD3-2|MRPL4	nc|ENSG00000105364|Q9BYD3-2|MRPL4	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.317138671875	2	545.317432	1088.62031	-0.51373	-0.00028014	-0.77412	-0.00042214	-1.2878	-0.00070228	545.3169196404446	142.63	4.7541	141.19	139.73	144.49	-1.4427					172	91	2	0	0	0	0.60342	1	14145	14145		31.53	0	1	155190			61844	2446	50997	51046	67932	67932					0.07954478414171717
VPTISVKNIP	10	Unmodified	_VPTISVKNIP_					0	0	0		ENST00000538029.1_1_12:9162377-9162479:+|nuORF	ENST00000538029.1_1_12:9162377-9162479:+|nuORF	ENST00000538029.1_1_12:9162377-9162479:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.8240966796875	2	534.326599	1066.63865	-2.277	-0.0012167	1.7654	0.00094328	-0.51168	-0.0002734	534.3273131527366	118.92	2.405	117.58	116.47	118.88	-1.3444					42	28	3	0	0	0	0.72319	1	11196	11196		27.882	0	1	61485			61845	13415	50998	51047	67933	67933					0.10799175545503203
VPTKAFVTF	9	Unmodified	_VPTKAFVTF_					0	0	0			REV__ENST00000577191.5_1_17:7125289-7125622:+|nuORF	REV__ENST00000577191.5_1_17:7125289-7125622:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.81536865234375	2	505.289485	1008.56442	-0.48659	-0.00024587	0.28827	0.00014566	-0.19831	-0.00010021	505.2895325325593	108.58	0.97292	107.39	107.11	108.09	-1.1978					40	17	3	0	0	0	0.027418	1	7753	7753		68.787	10.976	1	106110	+		61846	16922	50999	51048	67934	67934					0.06047832453987212
VPTKRGCSL	9	Unmodified	_VPTKRGCSL_					0	0	0			REV__DNMT3B|p.N442T|1|0.26|ENSG00000088305|chr20:32796817-32796817|A/C|missense_variant	REV__DNMT3B|p.N442T|1|0.26|ENSG00000088305|chr20:32796817-32796817|A/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	480.76690673828125	2	480.768394	959.522236	-1.3373	-0.00064294	-2.3303	-0.0011203	-3.6676	-0.0017633	480.7671509238754	54.147	1.2965	51.333	50.825	52.122	-2.8139					48	25	2	0	0	0	0.19758	1	3701	3701		76.774	5.4784	1	272510	+		61847	16326	51000	51049	67935	67935					0.04085533773968564
VPTLRSEL	8	Unmodified	_VPTLRSEL_					0	0	0		nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.E3356Afs*12|1|0.31|ENSG00000151914|chr6:56535225-56535226|-/CCAG|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;DST|p.A2546Pfs*8|1|0.39|ENSG00000151914|chr6:56560327-56560327|C/-|frameshift_variant;MACF1-CMTM4|1|fusion;MACF1-CMTM4|2|fusion;ENST00000476350.1_1_1:39768622-39838291:+|nuORF;nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001|DST;MACF1-CMTM4|1|fusion;nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	457.7701110839844	2	457.768917	913.523281	-0.62175	-0.00028462	0.53942	0.00024693	-0.082326	-3.7686E-05	457.7689518843612	80.065	1.1728	77.323	76.996	78.168	-2.7417					42	23	3	0	0	0	0.6345	1	6527	6527		56.721	4.4219	1	211060			61848	15005;5594;14812;15096	51001	51050	67936	67936					0.06306071414530834
VPTPARTLT	9	Unmodified	_VPTPARTLT_					0	0	0		ENSG00000186838|ENST00000335426|SELENOV	ENSG00000186838|ENST00000335426|SELENOV	ENSG00000186838|ENST00000335426|SELENOV	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.28338623046875	2	478.282192	954.549831	0.21934	0.00010491	-0.58265	-0.00027867	-0.36332	-0.00017377	478.28165405077385	78.104	1.4351	75.288	74.584	76.019	-2.8165					61	29	3	0	0	0	0.38529	1	6280	6280		53.351	2.1588	1	456490			61849	8365	51002	51051	67937	67937					0.07073760305854648
VPTPARTLT	9	Unmodified	_VPTPARTLT_					0	0	0		ENSG00000186838|ENST00000335426|SELENOV	ENSG00000186838|ENST00000335426|SELENOV	ENSG00000186838|ENST00000335426|SELENOV	MULTI-MATCH	OvCa99_classI_Rep5	1		2	478.282192	954.549831	2.6955	0.0012892	-0.93952	-0.00044936	1.7559	0.00083983	478.2817178509454	75.287	0.55826	75.287	75.005	75.563	0	0.065267	-0.00097986	NaN	53.351	18	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	263670			61850	8365	51002	51051							0.07073760305854648
VPTPARTLT	9	Unmodified	_VPTPARTLT_					0	0	0		ENSG00000186838|ENST00000335426|SELENOV	ENSG00000186838|ENST00000335426|SELENOV	ENSG00000186838|ENST00000335426|SELENOV	MULTI-MATCH	OvCa9_classI_Rep2	2		2	478.282192	954.549831	-0.68595	-0.00032808	0.70609	0.00033771	0.020145	9.635E-06	478.2822768367858	77.129	1.5118	75.34	74.53	76.042	-1.7894	0.11834	0.00059428	NaN	53.351	70	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	157920			61851	8365	51002	51051							0.07073760305854648
VPTPARTLT	9	Unmodified	_VPTPARTLT_					0	0	0		ENSG00000186838|ENST00000335426|SELENOV	ENSG00000186838|ENST00000335426|SELENOV	ENSG00000186838|ENST00000335426|SELENOV	MULTI-MATCH	OvCa9_classI_Rep3	3		2	478.282192	954.549831	-0.33693	-0.00016115	0.38796	0.00018555	0.051031	2.4407E-05	478.2822267723354	77.325	1.4877	74.972	74.262	75.749	-2.3527	-0.24966	0.00028996	NaN	53.351	62	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	448200			61852	8365	51002	51051							0.07073760305854648
VPTPIQRKTI	10	Unmodified	_VPTPIQRKTI_					0	0	0		nc|ENSG00000123064|Q8TDD1-2|DDX54;ENSG00000123064|ENST00000306014|DDX54	nc|ENSG00000123064|Q8TDD1-2|DDX54	nc|ENSG00000123064|Q8TDD1-2|DDX54	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.2952880859375	2	576.858598	1151.70264	-2.2765	-0.0013132	3.3898	0.0019555	1.1133	0.00064221	576.8606194144551	103.82	0.55146	103.82	103.6	104.15	0					16	12	2	0	0	0	0.02717	1	11605	11605		17.468	3.3309	1	128520			61853	3567	51003	51052	67938	67938					0.1328595570246307
VPTRYPSII	9	Unmodified	_VPTRYPSII_					0	0	0			REV__IGSF10|p.V2314Efs*19|1|0.09|ENSG00000152580|chr3:151437598-151437620|CTCTCCACCTTCATTTCGGGCCA/-|frameshift_variant	REV__IGSF10|p.V2314Efs*19|1|0.09|ENSG00000152580|chr3:151437598-151437620|CTCTCCACCTTCATTTCGGGCCA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3056030273438	2	523.305667	1044.59678	0.3552	0.00018588	-1.1012	-0.00057627	-0.74601	-0.00039039	523.3049818602126	107.67	1.863	107.37	107.07	108.93	-0.30836					109	37	6	0	0	0	0.27001	1	10054	10054		66.429	0	1	586410	+		61854	20294	51004	51053	67939	67939					0.0762661985700106
VPTRYPSII	9	Unmodified	_VPTRYPSII_					0	0	0			REV__IGSF10|p.V2314Efs*19|1|0.09|ENSG00000152580|chr3:151437598-151437620|CTCTCCACCTTCATTTCGGGCCA/-|frameshift_variant	REV__IGSF10|p.V2314Efs*19|1|0.09|ENSG00000152580|chr3:151437598-151437620|CTCTCCACCTTCATTTCGGGCCA/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3052978515625	2	523.305667	1044.59678	-0.23759	-0.00012433	-0.31404	-0.00016434	-0.55163	-0.00028867	523.3053728834569	108.59	1.7075	107.39	107.11	108.82	-1.1978					93	32	5	0	0	0	0.33652	1	7790	7790		58.782	0	1	782850	+		61855	20294	51004	51053	67940	67940					0.0762661985700106
VPTVKQTI	8	Unmodified	_VPTVKQTI_					0	0	0		NAV3|p.A613Gfs*64|1|0.03|ENSG00000067798|chr12:78007376-78007397|CTGTCCAACTCCCTCAACAGCA/-|frameshift_variant;NAV3|p.D810Gfs*7|1|0.22|ENSG00000067798|chr12:78051059-78051060|-/GAAGGTT|frameshift_variant;NAV3|p.Q1458Hfs*24|1|0.04|ENSG00000067798|chr12:78128799-78128799|G/-|frameshift_variant;nc|ENSG00000067798|Q8IVL0-3|NAV3;nc|ENSG00000067798|Q8IVL0-2|NAV3;ENSG00000067798|ENST00000397909|NAV3	NAV3|p.A613Gfs*64|1|0.03|ENSG00000067798|chr12:78007376-78007397|CTGTCCAACTCCCTCAACAGCA/-|frameshift_variant;nc|ENSG00000067798|Q8IVL0-3|NAV3	nc|ENSG00000067798|Q8IVL0-3|NAV3	MULTI-MSMS	OvCa9_classI_Rep4_	4	443.2740173339844	2	443.273835	884.533118	1.1525	0.00051086	-4.3689	-0.0019366	-3.2165	-0.0014258	443.27180064343105	139.52	2.0991	138.02	137.22	139.32	-1.4952					91	40	3	0	0	0	0.745	1	13607	13607		29.15	0	1	858700			61856	14856;1380	51005	51054	67941	67941					0.08623259419891838
VPVAKILTAH	10	Unmodified	_VPVAKILTAH_					0	0	0			REV__ENSG00000182359|ENST00000531837|KBTBD3	REV__ENSG00000182359|ENST00000531837|KBTBD3	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.8268432617188	2	524.829309	1047.64407	-5.767	-0.0030267	1.6173	0.0008488	-4.1497	-0.0021779	524.8300427930473	156.94	1.6972	155.39	155.01	156.7	-1.545					136	47	6	0	0	0	0.7759	1	15549	15549		21.96	0	1	1010500	+		61857	22287	51006	51055	67942	67942					0.12214899127980061
VPVARFPVPI	10	Unmodified	_VPVARFPVPI_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa9_classI_Rep2	2	547.3397827148438	2	547.839677	1093.6648	0.65277	0.00035761	3.8336	0.0021002	4.4864	0.0024578	547.8416503303802	71.419	3.1748	68.911	67.929	71.104	-2.5071					123	60	3	0	0	0	0.69986	1	5791	5791		30.504	0.6621	1	1272400	+		61858	28942;32737	51007	51056	67943	67943					0.12171489507659317
VPVFRNLSL	9	Unmodified	_VPVFRNLSL_					0	0	0		nc|ENSG00000161091|Q6NUT3-2|MFSD12;nc|ENSG00000161091|Q6NUT3-4|MFSD12;ENSG00000161091|ENST00000355415|MFSD12;nc|ENSG00000161091|Q6NUT3-3|MFSD12	nc|ENSG00000161091|Q6NUT3-2|MFSD12	nc|ENSG00000161091|Q6NUT3-2|MFSD12	MULTI-MSMS	OvCa9_classI_Rep2	2	522.8142700195312	2	522.813659	1043.61277	0.42548	0.00022245	-1.9528	-0.0010209	-1.5273	-0.00079849	522.8130438382631	109.79	0.69298	109.61	109.36	110.06	-0.17236					27	13	3	0	0	0	0.59259	1	10319	10319		32.812	0.85756	1	58792			61859	6120	51008	51057	67944	67944					0.09270326093906078
VPVFRNLSL	9	Unmodified	_VPVFRNLSL_					0	0	0		nc|ENSG00000161091|Q6NUT3-2|MFSD12;nc|ENSG00000161091|Q6NUT3-4|MFSD12;ENSG00000161091|ENST00000355415|MFSD12;nc|ENSG00000161091|Q6NUT3-3|MFSD12	nc|ENSG00000161091|Q6NUT3-2|MFSD12	nc|ENSG00000161091|Q6NUT3-2|MFSD12	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.8134155273438	2	522.813659	1043.61277	0.11607	6.0681E-05	-1.639	-0.00085692	-1.523	-0.00079623	522.8128943001187	111.23	1.3163	109.64	109.39	110.71	-1.5905					43	24	3	0	0	0	0.46356	1	10254	10254		45.972	3.5761	1	91799			61860	6120	51008	51057	67945	67945					0.09270326093906078
VPVLIHTL	8	Unmodified	_VPVLIHTL_					0	0	0			REV__nc|ENSG00000131697|O75161-2|NPHP4	REV__nc|ENSG00000131697|O75161-2|NPHP4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	445.7594909667969	2	446.286746	890.558939	0.086835	3.8753E-05	-0.086832	-3.8752E-05	2.5414E-06	1.1342E-09	446.28668239818677	83.331	1.0237	80.668	80.29	81.314	-2.6629					29	20	2	0	0	0	0.028476	1	6963	6963		77.944	20.491	1	35356	+		61861	19027	51009	51058	67946	67946					0.1092815366217792
VPVLIIHIF	9	Unmodified	_VPVLIIHIF_					0	0	0		PTAFR|p.I191M|1|0.05|ENSG00000169403|chr1:28150449-28150449|G/C|missense_variant;ENSG00000169403|ENST00000373857|PTAFR	PTAFR|p.I191M|1|0.05|ENSG00000169403|chr1:28150449-28150449|G/C|missense_variant	PTAFR|p.I191M|1|0.05|ENSG00000169403|chr1:28150449-28150449|G/C|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	525.802490234375	2	525.839146	1049.66374	0.2098	0.00011032	1.4479	0.00076138	1.6577	0.0008717	525.8407115253825	79.913	0.44728	78.218	77.923	78.37	-1.6951					13	8	2	0	0	0	0.027462	1	6712	6712		8.8223	1.132	1	7918.1			61862	7006	51010	51059	67947	67947					0.1408927513875824
VPVLVALTL	9	Unmodified	_VPVLVALTL_					0	0	0			REV__nc|ENSG00000283703|P0DP72|VSIG10L2	REV__nc|ENSG00000283703|P0DP72|VSIG10L2	MULTI-SECPEP	OvCa9_classI_Rep2	2	463.7919921875	2	462.810054	923.605554	-1.1239	-0.00052013	-1.6454	-0.00076153	-2.7693	-0.0012817	462.80915843326295	55.095	1.1444	52.281	51.972	53.116	-2.8139					37	22	2	0	0	0	0.027462	1	3826	3826		40.573	13.777	1	94656	+		61863	23666	51011	51060	67948	67948					0.14069593493468346
VPVPAELI	8	Unmodified	_VPVPAELI_					0	0	0			REV__ENST00000585780.5_1_17:43339330-43339522:+|nuORF	REV__ENST00000585780.5_1_17:43339330-43339522:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	419.25616455078125	2	419.257654	836.500755	-0.30894	-0.00012953	-2.6366	-0.0011054	-2.9456	-0.001235	419.2564271002057	38.885	1.3396	35.959	35.601	36.941	-2.9264					48	26	2	0	0	0	0.75724	1	1570	1570		23.037	0	1	347090	+		61864	27859	51012	51061	67949	67949					0.0759647201689404
VPVPGHRGSGT	11	Unmodified	_VPVPGHRGSGT_					0	0	0		ENST00000496961.5_1_1:110039559-110039661:+|nuORF	ENST00000496961.5_1_1:110039559-110039661:+|nuORF	ENST00000496961.5_1_1:110039559-110039661:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	532.2833251953125	2	532.285797	1062.55704	-4.5287	-0.0024106	1.0391	0.00055308	-3.4896	-0.0018575	532.2861235553668	152.16	0.83319	151.93	151.65	152.48	-0.22696					32	16	3	0	0	0	0.64273	1	15460	15460		40.778	7.9657	1	70988			61865	12797	51013	51062	67950	67950					0.028264929062970623
VPVPGVKLGPS	11	Unmodified	_VPVPGVKLGPS_					0	0	0			REV__ENSG00000106803|ENST00000223641|SEC61B	REV__ENSG00000106803|ENST00000223641|SEC61B	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.7665405273438	2	525.321317	1048.62808	-0.86333	-0.00045353	-0.9531	-0.00050068	-1.8164	-0.00095421	525.3199883146801	37.98	0.35759	37.98	37.896	38.254	0					9	7	2	0	0	0	0.025909	1	2148	2148		26.693	0	1	33960	+		61866	17826	51014	51063	67951	67951					0.10571192891075043
VPVPHTTAL	9	Unmodified	_VPVPHTTAL_					0	0	0		nc|ENSG00000086062|P15291-2|B4GALT1;ENSG00000086062|ENST00000379731|B4GALT1	nc|ENSG00000086062|P15291-2|B4GALT1	nc|ENSG00000086062|P15291-2|B4GALT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.7723083496094	2	467.77146	933.528367	0.31236	0.00014611	-0.69997	-0.00032743	-0.38761	-0.00018131	467.770986644632	75.267	1.0624	72.036	71.773	72.836	-3.2308					56	21	3	0	0	0	0.022571	1	5927	5927		143.97	60.687	1	453660			61867	1747	51015	51064	67952	67952					0.058943752771256186
VPVPHTTAL	9	Unmodified	_VPVPHTTAL_					0	0	0		nc|ENSG00000086062|P15291-2|B4GALT1;ENSG00000086062|ENST00000379731|B4GALT1	nc|ENSG00000086062|P15291-2|B4GALT1	nc|ENSG00000086062|P15291-2|B4GALT1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	467.77146	933.528367	-0.19751	-9.239E-05	0.28496	0.00013329	0.087446	4.0905E-05	467.7714569202947	74.351	1.68	71.94	71.548	73.228	-2.4106	-0.048196	0.0003002	NaN	143.97	78	33	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	342770			61868	1747	51015	51064							0.058943752771256186
VPVTKTVSTFV	11	Unmodified	_VPVTKTVSTFV_					0	0	0		HAVCR1|p.T206K|1|0.07|ENSG00000113249|chr5:157052417-157052417|G/T|missense_variant	HAVCR1|p.T206K|1|0.07|ENSG00000113249|chr5:157052417-157052417|G/T|missense_variant	HAVCR1|p.T206K|1|0.07|ENSG00000113249|chr5:157052417-157052417|G/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3426513671875	2	589.344989	1176.67542	-5.1334	-0.0030254	1.6192	0.00095427	-3.5142	-0.0020711	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.69081	2	12401	12401;12557		32.812	7.2384	1	589610			61869	14389	51016	51065	67953;67954	67953					0.09415427371413898
VPVTKTVSTFV	11	Unmodified	_VPVTKTVSTFV_					0	0	0		HAVCR1|p.T206K|1|0.07|ENSG00000113249|chr5:157052417-157052417|G/T|missense_variant	HAVCR1|p.T206K|1|0.07|ENSG00000113249|chr5:157052417-157052417|G/T|missense_variant	HAVCR1|p.T206K|1|0.07|ENSG00000113249|chr5:157052417-157052417|G/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.3411254882812	2	589.344989	1176.67542	-0.99558	-0.00058674	-2.469	-0.0014551	-3.4645	-0.0020418	589.3433618627441	145.15	3.8411	143.72	141.74	145.58	-1.4357					179	73	4	0	0	0	0.71789	1	14219	14219		23.523	1.5628	1	92509			61870	14389	51016	51065	67955	67955					0.09415427371413898
VPVTWTRLAHT	11	Unmodified	_VPVTWTRLAHT_					0	0	0		PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant;ENSG00000205038|ENST00000378402|PKHD1L1	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	PKHD1L1|p.L3900Ffs*38|1|0.28|ENSG00000205038|chr8:109518174-109518174|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	427.26666259765625	3	427.575178	1279.70371	0.19909	8.5128E-05	1.9548	0.00083584	2.1539	0.00092096	427.910467727913	69.072	0.24341	65.582	65.411	65.654	-3.4902					6	4	2	0	0	0	0.026145	1	5134	5134		23.378	8.6842	1	8931.6			61871	9047	51017	51066	67956	67956					0.07504170071365479
VPVVRPLL	8	Unmodified	_VPVVRPLL_					0	0	0			REV__ENSG00000253117|ENST00000254627|OC90	REV__ENSG00000253117|ENST00000254627|OC90	MULTI-MSMS	OvCa9_classI_Rep4_	4	446.8020324707031	2	446.802563	891.590573	-0.94931	-0.00042415	1.1109	0.00049634	0.16157	7.2189E-05	446.8029099891655	120.04	1.0977	118.69	118.35	119.45	-1.3444					54	20	4	0	0	0	0.67106	1	11295	11295		49.211	0	1	196690	+		61872	23500	51018	51067	67957	67957					0.14044146416131298
VPVWPVPSL	9	Unmodified	_VPVWPVPSL_					0	0	0		ENST00000493195.5_1_1:159898873-159900045:-|nuORF	ENST00000493195.5_1_1:159898873-159900045:-|nuORF	ENST00000493195.5_1_1:159898873-159900045:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.2905578613281	2	497.292028	992.569503	-0.83845	-0.00041696	-3.566	-0.0017734	-4.4045	-0.0021903	497.2900687946997	82.066	2.1884	79.383	78.423	80.612	-2.683					102	44	3	0	0	0	0.22913	3	6803	6766;6791;6803		71.378	3.2216	1	598340			61873	12734	51019	51068	67958;67959;67960	67960					0.0729213631661878
VPVWPVPSL	9	Unmodified	_VPVWPVPSL_					0	0	0		ENST00000493195.5_1_1:159898873-159900045:-|nuORF	ENST00000493195.5_1_1:159898873-159900045:-|nuORF	ENST00000493195.5_1_1:159898873-159900045:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	497.292028	992.569503	0.36892	0.00018346	-4.6165	-0.0022958	-4.2476	-0.0021123	497.2895822572976	81.149	1.9367	79.501	78.815	80.752	-1.6485	0.055181	-0.00073542	NaN	71.378	97	37	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	399680			61874	12734	51019	51068							0.0729213631661878
VPVWPVPSL	9	Unmodified	_VPVWPVPSL_					0	0	0		ENST00000493195.5_1_1:159898873-159900045:-|nuORF	ENST00000493195.5_1_1:159898873-159900045:-|nuORF	ENST00000493195.5_1_1:159898873-159900045:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	497.292028	992.569503	-0.85475	-0.00042506	-3.3372	-0.0016596	-4.1919	-0.0020846	497.2902150660393	81.776	2.3528	79.454	78.749	81.102	-2.3226	0.0077962	0.000537	NaN	71.378	108	46	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	723710			61875	12734	51019	51068							0.0729213631661878
VPWDPPPIDLQ	11	Unmodified	_VPWDPPPIDLQ_					0	0	0		ENSG00000254585|ENST00000650528|MAGEL2	ENSG00000254585|ENST00000650528|MAGEL2	ENSG00000254585|ENST00000650528|MAGEL2	MSMS	OvCa9_classI_Rep4_	4	638.8134155273438	2	638.832246	1275.64994	NaN	NaN	NaN	NaN	NaN	NaN	NaN	151.28	1	149.84	149.34	150.34	-1.4344								0	0	0	0.19474	1	14950	14950		22.58	0.89391	1				61876	9448	51020	51069	67961	67961					0.02313952848999179
VPWTAFRATPL	11	Unmodified	_VPWTAFRATPL_					0	0	0		ENSG00000204033|ENST00000372113|LRIT2;nc|ENSG00000204033|A6NDA9-2|LRIT2	ENSG00000204033|ENST00000372113|LRIT2	ENSG00000204033|ENST00000372113|LRIT2	MULTI-MSMS	OvCa9_classI_Rep4_	4	420.2356262207031	3	420.236274	1257.68699	-1.395	-0.00058622	-2.2665	-0.00095248	-3.6615	-0.0015387	420.2353399671116	92.632	2.0245	90.125	89.602	91.627	-2.5072					112	41	4	0	0	0	0.59615	1	8077	8077		45.022	2.1579	1	1691700			61877	8944	51021	51070	67962	67962					0.06845669185418046
VPYHDSINL	9	Unmodified	_VPYHDSINL_					0	0	0			REV__ENSG00000013563|ENST00000369807|DNASE1L1	REV__ENSG00000013563|ENST00000369807|DNASE1L1	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.310791015625	2	529.269281	1056.52401	-0.95113	-0.0005034	1.6903	0.00089463	0.73918	0.00039123	529.7718651640387	100.64	0.70108	99.039	98.85	99.551	-1.6053					19	13	2	0	0	0	0.027462	1	6817	6817		30.504	11.4	1	19597	+		61878	16509	51022	51071	67963	67963					-0.001991339364394662
VPYLRDLGL	9	Unmodified	_VPYLRDLGL_					0	0	0		ENST00000467818.1_1_21:43696971-43706199:+|nuORF;ENST00000472587.5_1_21:43696971-43716499:+|nuORF;ABCG1|p.R533Pfs*11|1|0.12|ENSG00000160179|chr21:42291565-42291565|G/-|frameshift_variant;nc|ENSG00000160179|P45844-7|ABCG1;nc|ENSG00000160179|P45844-6|ABCG1;nc|ENSG00000160179|P45844-5|ABCG1;ENSG00000160179|ENST00000398449|ABCG1;nc|ENSG00000160179|P45844-3|ABCG1;nc|ENSG00000160179|P45844-2|ABCG1;nc|ENSG00000160179|P45844|ABCG1;nc|ENSG00000160179|P45844-8|ABCG1	ENST00000467818.1_1_21:43696971-43706199:+|nuORF	ENST00000467818.1_1_21:43696971-43706199:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.3048706054688	2	523.305667	1044.59678	-1.9667	-0.0010292	2.463	0.0012889	0.49627	0.0002597	523.3072747512368	119.54	1.2463	118.19	117.68	118.93	-1.3444					55	23	4	0	0	0	0.40818	1	11218	11218		51.193	1.7511	1	258840			61879	6	51023	51072	67964	67964					0.07626619856978323
VPYLVLLII	9	Unmodified	_VPYLVLLII_					0	0	0		ENSG00000197106|ENST00000331565|SLC6A17	ENSG00000197106|ENST00000331565|SLC6A17	ENSG00000197106|ENST00000331565|SLC6A17	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.81201171875	2	521.849179	1041.6838	-0.89293	-0.00046597	-1.348	-0.00070345	-2.2409	-0.0011694	521.8486707405684	67.972	0.39267	65.311	65.09	65.483	-2.661					11	7	2	0	0	0	0.027462	1	5337	5337		14.664	2.4572	1	25404			61880	8676	51024	51073	67965	67965					0.16463026078713483
VPYLWRQYLYV	11	Unmodified	_VPYLWRQYLYV_					0	0	0			REV__ENSG00000049656|ENST00000320895|CLPTM1L	REV__ENSG00000049656|ENST00000320895|CLPTM1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.7908020019531	3	500.606367	1498.79727	-0.81313	-0.00040706	2.8583	0.0014309	2.0452	0.0010238	500.6075721183444	28.531	0.39889	28.531	28.39	28.789	0					15	7	3	0	0	0	0.026478	1	956	956		10.587	0.4829	1	42451	+		61881	16678	51025	51074	67966	67966					0.06782469453787598
VPYVGYRLDD	10	Unmodified	_VPYVGYRLDD_					0	0	0			REV__ENSG00000172687|ENST00000683779|ZNF738	REV__ENSG00000172687|ENST00000683779|ZNF738	MULTI-SECPEP	OvCa9_classI_Rep2	2	598.3146362304688	2	598.800946	1195.58734	-0.3497	-0.0002094	-3.8623	-0.0023127	-4.212	-0.0025221	598.7984222574099	107.57	0.67526	107.26	107.02	107.69	-0.30836					24	13	3	0	0	0	0.026826	1	10025	10025		44.377	11.565	1	58182	+		61882	21719	51026	51075	67967	67967					-0.0026319321921164374
VQAAYGIC	8	Unmodified	_VQAAYGIC_					0	0	0			REV__tr|A0A553SPY6|A0A553SPY6_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_14580PE=4SV=1	REV__tr|A0A553SPY6|A0A553SPY6_NIACIGNATfamilyN-acetyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_14580PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	412.7040100097656	2	412.702189	823.389824	0.74793	0.00030867	2.4921	0.0010285	3.24	0.0013372	412.70357783628623	32.14	6.2924	32.14	31.559	37.851	0					232	132	4	0	0	0	0.69415	1	1568	1568		44.531	3.9584	1	839830	+		61883	30585	51027	51076	67968	67968					-0.028934909628333116
VQAHVDADV	9	Unmodified	_VQAHVDADV_					0	0	0		ENST00000605035.5_1_6:348606-348948:+|nuORF	ENST00000605035.5_1_6:348606-348948:+|nuORF	ENST00000605035.5_1_6:348606-348948:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	477.238037109375	2	477.237981	952.461409	-0.39032	-0.00018628	-0.20551	-9.8076E-05	-0.59583	-0.00028435	477.2378900542606	40.317	1.4897	40.317	40.06	41.55	0					57	32	4	0	0	0	0.019133	1	2453	2453		148.04	17.012	1	4172700			61884	14267	51028	51077	67969	67969					-0.01672280004629556
VQAIFPTPDP	10	Unmodified	_VQAIFPTPDP_					0	0	0		ENSG00000005339|ENST00000262367|CREBBP;nc|ENSG00000005339|Q92793-2|CREBBP;CREBBP|p.G837Rfs*10|1|0.78|ENSG00000005339|chr16:3770935-3770941|GAGGCCC/-|frameshift_variant;CREBBP-SRL|1|fusion;CREBBP-SRL|2|fusion;ENSG00000100393|ENST00000263253|EP300	ENSG00000005339|ENST00000262367|CREBBP;CREBBP-SRL|1|fusion;ENSG00000100393|ENST00000263253|EP300	ENSG00000005339|ENST00000262367|CREBBP	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.77734375	2	542.787307	1083.56006	1.7664	0.00095878	3.3486	0.0018176	5.115	0.0027764	542.788744333962	79.594	0.26787	79.594	79.436	79.704	0					13	6	3	0	0	0	0.026659	1	8100	8100		45.972	11.8	1	493550			61885	851;2061;679	51029	51078	67970	67970					0.02162323240418118
VQAKKLVESLP	11	Unmodified	_VQAKKLVESLP_					0	0	0		ENSG00000262814|ENST00000333676|MRPL12	ENSG00000262814|ENST00000333676|MRPL12	ENSG00000262814|ENST00000333676|MRPL12	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3696899414062	2	606.371538	1210.72852	-3.14	-0.001904	-0.05994	-3.6346E-05	-3.1999	-0.0019404	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.68021	2	14807	14807;14950		36.447	0.89391	1	257720			61886	9512	51030	51079	67971;67972	67971					0.13158805154080255
VQAKLEDI	8	Unmodified	_VQAKLEDI_					0	0	0			REV__tr|A0A7D6ZVS6|A0A7D6ZVS6_9CLOTAldehyde-alcoholdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=adhEPE=3SV=1	REV__tr|A0A7D6ZVS6|A0A7D6ZVS6_9CLOTAldehyde-alcoholdehydrogenaseOS=ClostridiumintestinaleOX=36845GN=adhEPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.78515625	2	458.260925	914.507297	2.3929	0.0010966	-2.9812	-0.0013662	-0.58828	-0.00026959	458.2615694379244	84.176	0.38053	84.176	83.965	84.345	0					13	8	2	0	0	0	0.028476	1	8786	8786		45.952	5.3793	1	42394	+		61887	32259	51031	51080	67973	67973					0.04662365177614447
VQAKSFISKV	10	Unmodified	_VQAKSFISKV_					0	0	0			REV__ENSG00000146263|ENST00000683635|MMS22L	REV__ENSG00000146263|ENST00000683635|MMS22L	MULTI-MSMS	OvCa9_classI_Rep2	2	553.830322265625	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.79917	1	14098	14098		19.104	0	1	245610	+		61888	20003	51032	51081	67974	67974					0.10094577919812764
VQALIKNFMGL	11	Unmodified	_VQALIKNFMGL_					0	0	0			REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	REV__nc|ENSG00000171804|Q6ZQQ6|WDR87	MULTI-MSMS	OvCa9_classI_Rep2	2	617.3497314453125	2	617.354834	1232.69511	-4.0098	-0.0024755	-3.4249	-0.0021144	-7.4347	-0.0045899	617.3525047754998	151.58	1.1368	151.35	150.94	152.08	-0.22696					56	22	4	0	0	0	0.71191	1	15426	15426		25.574	1.0549	1	109310	+		61889	21647	51033	51082	67975	67975					0.0880748011054493
VQALKKSKL	9	Unmodified	_VQALKKSKL_					0	0	0		ENSG00000173581|ENST00000586790|CCDC106	ENSG00000173581|ENST00000586790|CCDC106	ENSG00000173581|ENST00000586790|CCDC106	MULTI-MSMS	OvCa9_classI_Rep2	2	507.8363037109375	2	507.837134	1013.65972	1.5913	0.0008081	-1.9271	-0.00097867	-0.33587	-0.00017057	507.8360989059997	28.421	0.96409	25.712	25.443	26.407	-2.7097					44	20	3	0	0	0	0.50149	1	587	587		42.396	0	1	67466			61890	7393	51034	51083	67976	67976					0.153431856450311
VQALLTVLN	9	Unmodified	_VQALLTVLN_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.78765869140625	2	485.800217	969.585882	1.2205	0.00059292	-1.8845	-0.00091548	-0.66397	-0.00032256	485.79885807272615	86.33	1.5882	83.69	83.3	84.888	-2.6402					50	31	3	0	0	0	0.027062	1	7359	7359		98.629	29.002	1	231060			61891	1888	51035	51084	67977	67977					0.09987217482694177
VQALLTVLN	9	Unmodified	_VQALLTVLN_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	485.800217	969.585882	-1.5507	-0.00075335	1.631	0.00079236	0.080306	3.9013E-05	485.80033406967743	85.218	1.8499	83.727	83.159	85.009	-1.4906	0.10648	0.00088359	NaN	98.629	54	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136240			61892	1888	51035	51084							0.09987217482694177
VQALLTVLN	9	Unmodified	_VQALLTVLN_					0	0	0		ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	ENSG00000092148|ENST00000399332|HECTD1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	485.800217	969.585882	-1.5549	-0.00075538	1.9503	0.00094745	0.39537	0.00019207	485.8006733402495	85.665	1.1019	83.444	83.035	84.137	-2.2204	-0.17617	0.0011938	NaN	98.629	43	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	318920			61893	1888	51035	51084							0.09987217482694177
VQALSPNPM	9	Unmodified	_VQALSPNPM_					0	0	0			REV__nc|ENSG00000152240|Q96CS2-2|HAUS1	REV__nc|ENSG00000152240|Q96CS2-2|HAUS1	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.7781066894531	2	478.747127	955.479702	-0.37813	-0.00018103	0.43435	0.00020794	0.056217	2.6914E-05	478.74723542808545	73.535	0.93933	71.135	70.43	71.369	-2.3999					26	17	2	0	0	0	0.027425	1	6006	6006		60.118	16.001	1	19038	+		61894	20277	51036	51085	67978	67978					0.0001813864572568491
VQALSPNPM	9	Unmodified	_VQALSPNPM_					0	0	0			REV__nc|ENSG00000152240|Q96CS2-2|HAUS1	REV__nc|ENSG00000152240|Q96CS2-2|HAUS1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	478.747127	955.479702	0.3807	0.00018226	-0.46171	-0.00022104	-0.081008	-3.8782E-05	478.7467433552823	73.407	0.34851	70.92	70.776	71.125	-2.4873	-0.20773	-0.0002488	NaN	60.118	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10575	+		61895	20277	51036	51085							0.0001813864572568491
VQAPPFLCSL	10	Unmodified	_VQAPPFLCSL_					0	0	0			REV__chr17:43536479-43542971|378|147.33|0.46|8.34|-|2|ETV4,None|1	REV__chr17:43536479-43542971|378|147.33|0.46|8.34|-|2|ETV4,None|1	MULTI-MSMS	OvCa99_classI_Rep5	1	537.785888671875	2	537.786253	1073.55795	1.2167	0.00065433	-3.1331	-0.0016849	-1.9164	-0.0010306	537.7844053924715	124.58	1.1822	124.58	124.24	125.42	0					69	27	4	0	0	0	0.5675	1	14429	14429		45.972	5.1941	1	2928300	+		61896	15946	51037	51086	67979	67979					0.024115712309594528
VQAQPLLPSPQ	11	Unmodified	_VQAQPLLPSPQ_					0	0	0		ENST00000578711.1_1_17:7128236-7128413:+|nuORF	ENST00000578711.1_1_17:7128236-7128413:+|nuORF	ENST00000578711.1_1_17:7128236-7128413:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.7911987304688	2	589.332413	1176.65027	0.056487	3.329E-05	-3.9737	-0.0023418	-3.9172	-0.0023085	589.329910689287	114.55	0.54338	114.55	114.15	114.7	0					28	11	4	0	0	0	0.02523	1	13041	13041		46.457	11.305	1	149170			61897	13971	51038	51087	67980	67980					0.06901372568859188
VQARIQKT	8	Unmodified	_VQARIQKT_					0	0	0			REV__nc|ENSG00000273085|Q8NGJ3|OR52E1	REV__nc|ENSG00000273085|Q8NGJ3|OR52E1	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.7360534667969	2	472.287808	942.561064	-0.63059	-0.00029782	-1.6138	-0.0007622	-2.2444	-0.00106	472.28787478687065	37.495	0.4158	37.495	37.205	37.621	0					12	8	2	0	0	0	0.028476	1	2065	2065		24.203	0	1	58478	+		61898	29191	51039	51088	67981	67981					0.08748582400005489
VQARLVKS	8	Unmodified	_VQARLVKS_					0	0	0		ENST00000546536.5_1_14:105957646-105963882:+|nuORF;nc|ENSG00000185347|Q86SX3-5|TEDC1;nc|ENSG00000185347|Q86SX3-3|TEDC1;nc|ENSG00000185347|Q86SX3-2|TEDC1;nc|ENSG00000185347|Q86SX3-6|TEDC1;ENSG00000185347|ENST00000392523|TEDC1	ENST00000546536.5_1_14:105957646-105963882:+|nuORF	ENST00000546536.5_1_14:105957646-105963882:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	450.7847595214844	2	450.784902	899.55525	-0.14553	-6.5601E-05	-0.99428	-0.00044821	-1.1398	-0.00051381	450.78450405514036	42.518	3.0461	42.518	42.199	45.245	0					153	69	5	0	0	0	0.38598	1	2752	2752		90.777	14.003	1	39385000			61899	13536	51040	51089	67982	67982					0.10145483888334184
VQARVLEPL	9	Unmodified	_VQARVLEPL_					0	0	0			REV__ENST00000541969.1_1_12:6969646-6972391:+|nuORF	REV__ENST00000541969.1_1_12:6969646-6972391:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	512.8353271484375	2	512.811116	1023.60768	-0.3413	-0.00017502	1.4983	0.00076836	1.157	0.00059334	512.8115736656408	89.92	0.56651	87.84	87.541	88.108	-2.0805					21	10	3	0	0	0	0.027462	1	5540	5540		35.618	0	1	35964	+		61900	18044	51041	51090	67983	67983					0.09682022231265819
VQASILSH	8	Unmodified	_VQASILSH_					0	0	0		NEO1|p.G1147Afs*12|1|0.06|ENSG00000067141|chr15:73288341-73288341|G/-|frameshift_variant;nc|ENSG00000067141|Q92859-3|NEO1;nc|ENSG00000067141|Q92859-2|NEO1;nc|ENSG00000067141|Q92859-4|NEO1;ENSG00000067141|ENST00000261908|NEO1	NEO1|p.G1147Afs*12|1|0.06|ENSG00000067141|chr15:73288341-73288341|G/-|frameshift_variant	NEO1|p.G1147Afs*12|1|0.06|ENSG00000067141|chr15:73288341-73288341|G/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	427.74102783203125	2	427.74016	853.465767	3.0547	0.0013066	-1.0296	-0.00044041	2.0251	0.00086623	427.7395919641251	100.96	0.66828	100.96	100.65	101.32	0					29	15	3	0	0	0	0.45246	1	11215	11215		82.305	2.854	1	964290			61901	1367	51042	51091	67984	67984					0.03317229208948902
VQCLLGAVIV	10	Unmodified	_VQCLLGAVIV_					0	0	0		ENST00000375151.4_1_X:54471110-54471305:+|nuORF	ENST00000375151.4_1_X:54471110-54471305:+|nuORF	ENST00000375151.4_1_X:54471110-54471305:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	507.80450439453125	2	507.804445	1013.59434	1.2531	0.00063632	-2.3212	-0.0011787	-1.0681	-0.00054238	507.8030881472612	144.62	0.82736	144.62	144.31	145.13	0					38	16	3	0	0	0	0.53885	1	16925	16925		49.442	1.5259	1	180160			61902	11049	51043	51092	67985	67985					0.08808448127672364
VQDALHWK	8	Unmodified	_VQDALHWK_					0	0	0		nc|ENSG00000119402|Q9UKT8-2|FBXW2;ENSG00000119402|ENST00000608872|FBXW2	nc|ENSG00000119402|Q9UKT8-2|FBXW2	nc|ENSG00000119402|Q9UKT8-2|FBXW2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.8009948730469	2	498.766709	995.518865	-1.3119	-0.00065434	1.4859	0.0007411	0.17395	8.6762E-05	498.76741779816774	43.973	0.95345	40.966	40.641	41.595	-3.0074					28	18	2	0	0	0	0.028476	1	2182	2182		19.36	0	1	89333			61903	3360	51044	51093	67986	67986					0.02092606991595858
VQDALHWK	8	Unmodified	_VQDALHWK_					0	0	0		nc|ENSG00000119402|Q9UKT8-2|FBXW2;ENSG00000119402|ENST00000608872|FBXW2	nc|ENSG00000119402|Q9UKT8-2|FBXW2	nc|ENSG00000119402|Q9UKT8-2|FBXW2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	498.766709	995.518865	0.2341	0.00011676	-0.53888	-0.00026877	-0.30478	-0.00015201	498.7661240784942	43.805	0.64614	41.096	40.906	41.552	-2.7097	0.064969	-0.0015551	NaN	18.324	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16475			61904	3360	51044	51093							0.02092606991595858
VQDDIKESV	9	Unmodified	_VQDDIKESV_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	OvCa99_classI_Rep5	1	516.7640991210938	2	516.764029	1031.5135	-0.41977	-0.00021692	0.28258	0.00014603	-0.13719	-7.0897E-05	516.7640015947555	56.51	0.83772	56.51	56.3	57.138	0					37	19	3	0	0	0	0.32653	1	4704	4704		59.931	10.489	1	1599200			61905	4517	51045	51094	67987	67987					-0.0009916138151311316
VQDDIKESV	9	Unmodified	_VQDDIKESV_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MATCH	OvCa9_classI_Rep2	2		2	516.764029	1031.5135	-0.15642	-8.083E-05	0.25797	0.00013331	0.10155	5.2478E-05	516.7639261889582	59.459	0.57034	56.679	56.452	57.022	-2.7801	0.12267	-3.441E-05	NaN	59.931	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24259			61906	4517	51045	51094							-0.0009916138151311316
VQDDIKESV	9	Unmodified	_VQDDIKESV_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	516.764029	1031.5135	0.086295	4.4594E-05	0.42983	0.00022212	0.51612	0.00026671	516.7636574437138	59.91	1.2346	56.48	56.259	57.494	-3.43	-0.076722	0.00014321	NaN	59.931	39	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115950			61907	4517	51045	51094							-0.0009916138151311316
VQDKRHELD	9	Unmodified	_VQDKRHELD_					0	0	0			REV__nc|ENSG00000083535|Q8WXW3-2|PIBF1	REV__nc|ENSG00000083535|Q8WXW3-2|PIBF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.7914428710938	2	570.293819	1138.57309	0.74753	0.00042631	-1.2208	-0.00069624	-0.47332	-0.00026993	570.2931516906182	151.8	1.0723	151.8	151.04	152.12	0					29	21	2	0	0	0	0.027461	1	17708	17708		32.812	0	1	56324	+		61908	17105	51046	51095	67988	67988					0.009341543525124507
VQDLGLFSF	9	Unmodified	_VQDLGLFSF_					0	0	0			REV__tr|A0A553SKG0|A0A553SKG0_NIACITIGR04086familymembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_18535PE=4SV=1	REV__tr|A0A553SKG0|A0A553SKG0_NIACITIGR04086familymembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_18535PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	513.2858276367188	2	513.26875	1024.52295	-1.3025	-0.00066853	-2.7723	-0.0014229	-4.0748	-0.0020915	513.2673833798302	88.815	1.3898	86.212	85.781	87.171	-2.6027					40	27	3	0	0	0	0.027462	1	7563	7563		29.15	11.785	1	183100	+		61909	30121	51047	51096	67989	67989					0.011666516946661432
VQDLGLFSF	9	Unmodified	_VQDLGLFSF_					0	0	0			REV__tr|A0A553SKG0|A0A553SKG0_NIACITIGR04086familymembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_18535PE=4SV=1	REV__tr|A0A553SKG0|A0A553SKG0_NIACITIGR04086familymembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_18535PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	513.26875	1024.52295	1.6089	0.00082581	-5.6294	-0.0028894	-4.0205	-0.0020636	513.2659349654775	87.621	1.5246	86.189	85.741	87.266	-1.4311	-0.011219	-0.0012776	NaN	21.96	65	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100250	+		61910	30121	51047	51096							0.011666516946661432
VQDPNERFKAW	11	Unmodified	_VQDPNERFKAW_					0	0	0			REV__ENSG00000196233|ENST00000421806|LCOR	REV__ENSG00000196233|ENST00000421806|LCOR	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.74053955078125	3	463.901843	1388.6837	-0.43124	-0.00020005	-3.1876	-0.0014787	-3.6188	-0.0016788	464.2350492631699	41.528	0.35524	41.528	41.195	41.55	0					9	7	2	0	0	0	0.025772	1	2581	2581		21.032	0	1	73064	+		61911	22804	51048	51097	67990	67990					0.004903743407567163
VQEETINL	8	Unmodified	_VQEETINL_					0	0	0			REV__tr|A0A7D6W3M8|A0A7D6W3M8_9CLOTAdenylosuccinatelyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10790PE=3SV=1	REV__tr|A0A7D6W3M8|A0A7D6W3M8_9CLOTAdenylosuccinatelyaseOS=ClostridiumintestinaleOX=36845GN=HZF06_10790PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	473.24749755859375	2	473.248015	944.481476	-0.62364	-0.00029514	0.22955	0.00010863	-0.39409	-0.0001865	473.24797868285805	44.418	0.53683	44.418	44.169	44.706	0					20	11	3	0	0	0	0.42649	1	3006	3006		84.916	0	1	321310	+		61912	31918	51049	51098	67991	67991					0.007014709353256876
VQEGMDKLMKG	11	Oxidation (M)	_VQEGMDKLM(Oxidation (M))KG_		VQEGM(0.001)DKLM(0.999)KG		VQEGM(-32)DKLM(32)KG	0	0	1		tr|A0A7D7A4N8|A0A7D7A4N8_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03875PE=4SV=1	tr|A0A7D7A4N8|A0A7D7A4N8_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03875PE=4SV=1	tr|A0A7D7A4N8|A0A7D7A4N8_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03875PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	626.3081665039062	2	626.307223	1250.59989	1.5873	0.00099415	0.97988	0.00061371	2.5672	0.0016079	626.3078220024241	91.233	0.9448	91.233	90.976	91.92	0					48	22	3	0	0	0	0.17933	1	9828	9828		82.75	10.873	2	7866100			61913	36149	51050	51099	67992	67992		782			-0.01538241142861807
VQEIVSKSR	9	Unmodified	_VQEIVSKSR_					0	0	0			REV__nc|ENSG00000133030|Q6WCQ1|MPRIP	REV__nc|ENSG00000133030|Q6WCQ1|MPRIP	MSMS	OvCa9_classI_Rep4_	4	523.3053588867188	2	523.303655	1044.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.91	1	138.42	137.92	138.92	-1.4952								0	0	0	0.17408	1	13645	13645		42.864	10.909	1		+		61914	28855	51051	51100	67993	67993					0.07224530363282611
VQEKTLNL	8	Unmodified	_VQEKTLNL_					0	0	0			REV__tr|A0A7D6ZPL2|A0A7D6ZPL2_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_20900PE=4SV=1	REV__tr|A0A7D6ZPL2|A0A7D6ZPL2_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_20900PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	472.7752380371094	2	472.7742	943.533846	0.052889	2.5004E-05	0.30849	0.00014585	0.36138	0.00017085	472.7742503778092	69.223	0.53247	69.223	69.019	69.552	0					26	12	3	0	0	0	0.48084	1	6577	6577		79.451	0	1	1266400	+		61915	32139	51052	51101	67994	67994					0.059820540689429436
VQEKTLNL	8	Unmodified	_VQEKTLNL_					0	0	0			REV__tr|A0A7D6ZPL2|A0A7D6ZPL2_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_20900PE=4SV=1	REV__tr|A0A7D6ZPL2|A0A7D6ZPL2_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_20900PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	472.7742	943.533846	0.052889	2.5004E-05	0.30849	0.00014585	0.36138	0.00017085	472.7742503778092	69.223	0.53247	69.223	69.019	69.552	0	0	0	NaN	79.451	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1266400	+		61916	32139	51052	51101							0.059820540689429436
VQEMAKLDAK	10	Unmodified	_VQEMAKLDAK_					0	0	0		ENSG00000099284|ENST00000373255|MACROH2A2	ENSG00000099284|ENST00000373255|MACROH2A2	ENSG00000099284|ENST00000373255|MACROH2A2	MULTI-MSMS	OvCa99_classI_Rep5	1	566.8037719726562	2	566.805174	1131.59579	0.71755	0.00040671	0.32287	0.000183	1.0404	0.00058972	566.8045162577855	45.665	0.87144	45.665	45.454	46.326	0					63	19	6	0	0	0	0.073842	1	3168	3168		120.31	21.677	1	1786500			61917	1965	51053	51102	67995	67995					0.03526037425785944
VQENQMDKARR	11	Unmodified	_VQENQMDKARR_					0	0	0		ENSG00000089199|ENST00000378961|CHGB	ENSG00000089199|ENST00000378961|CHGB	ENSG00000089199|ENST00000378961|CHGB	MULTI-SECPEP	OvCa99_classI_Rep5	1	458.8763122558594	3	458.901737	1373.68338	0.13048	5.9875E-05	4.483	0.0020573	4.6135	0.0021171	458.90363350883695	31.367	0.73541	31.367	31.171	31.906	0					27	14	4	0	0	0	0.02595	1	1301	1301		15.921	5.3339	1	139980			61918	1816	51054	51103	67996	67996					0.01148631349246898
VQEPYYHYYEL	11	Unmodified	_VQEPYYHYYEL_					0	0	0			REV__ASCC2|p.D497Y|1|0.08|ENSG00000100325|chr22:29802073-29802073|C/A|missense_variant	REV__ASCC2|p.D497Y|1|0.08|ENSG00000100325|chr22:29802073-29802073|C/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	502.3004455566406	3	501.897875	1502.6718	-0.78208	-0.00039252	-3.7417	-0.0018779	-4.5237	-0.0022705	501.8965209985268	115.85	0.59206	114.81	114.45	115.05	-1.0414					15	11	2	0	0	0	0.026364	1	8580	8580		3.026	0	1	10583	+		61919	15669	51055	51104	67997	67997					-0.059432871930994224
VQEQHIWK	8	Unmodified	_VQEQHIWK_					0	0	0		ENST00000327111.7_1_5:92929914-92929986:+|nuORF	ENST00000327111.7_1_5:92929914-92929986:+|nuORF	ENST00000327111.7_1_5:92929914-92929986:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	534.2875366210938	2	534.285266	1066.55598	0.90056	0.00048116	-1.7928	-0.00095787	-0.89225	-0.00047671	534.284212437697	153.37	2.6517	153.37	152.52	155.17	0					122	56	3	0	0	0	0.72896	1	18018	18018		37.159	1.5408	1	129630			61920	10413	51056	51105	67998	67998					0.025362785373545194
VQEQYPPP	8	Unmodified	_VQEQYPPP_					0	0	0			REV__ENSG00000123091|ENST00000242719|RNF11	REV__ENSG00000123091|ENST00000242719|RNF11	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.28558349609375	2	479.23745	956.460347	0.18722	8.9722E-05	-3.8627	-0.0018511	-3.6755	-0.0017614	479.2358504884298	58.323	0.29401	58.323	58.194	58.488	0					9	6	2	0	0	0	0.028476	1	4963	4963		51.335	8.9393	1	117750	+		61921	18622	51057	51106	67999	67999					-0.019624943735266243
VQERAVKAL	9	Unmodified	_VQERAVKAL_					0	0	0			REV__ENSG00000013563|ENST00000369807|DNASE1L1	REV__ENSG00000013563|ENST00000369807|DNASE1L1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.8142395019531	2	507.308741	1012.60293	-0.33268	-0.00016877	-4.3466	-0.0022051	-4.6793	-0.0023738	507.3066245830858	57.724	1.2661	54.379	53.832	55.098	-3.3449					32	24	2	0	0	0	0.027462	1	3817	3817		27.882	0	1	129720	+		61922	16509	51058	51107	68000	68000					0.0971313808852301
VQFEEYSVG	9	Unmodified	_VQFEEYSVG_					0	0	0			REV__PKD2|p.M870Wfs*6|1|0.22|ENSG00000118762|chr4:88074895-88074895|T/-|frameshift_variant	REV__PKD2|p.M870Wfs*6|1|0.22|ENSG00000118762|chr4:88074895-88074895|T/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.3068237304688	2	529.245472	1056.47639	0.16626	8.7994E-05	-4.3222	-0.0022875	-4.1559	-0.0021995	529.2430661014893	104.52	0.46609	103.08	102.81	103.28	-1.4347					15	8	2	0	0	0	0.027462	1	7284	7284		15.642	0.77694	1	43454	+		61923	18414	51059	51108	68001	68001					-0.049588329272637566
VQFFPLLLL	9	Unmodified	_VQFFPLLLL_					0	0	0		ADCK2|p.K109Q|1|0.3|ENSG00000133597|chr7:140673655-140673655|A/C|missense_variant	ADCK2|p.K109Q|1|0.3|ENSG00000133597|chr7:140673655-140673655|A/C|missense_variant	ADCK2|p.K109Q|1|0.3|ENSG00000133597|chr7:140673655-140673655|A/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.3109130859375	2	545.338978	1088.6634	1.9248	0.0010496	0.035132	1.9159E-05	1.9599	0.0010688	545.33882555335	133.94	0.61925	133.94	133.63	134.24	0					21	12	2	0	0	0	0.027425	1	15572	15572		50.025	0	1	151780			61924	32	51060	51109	68002	68002					0.12261855418887535
VQFGPHDQS	9	Unmodified	_VQFGPHDQS_					0	0	0			REV__ENSG00000111452|ENST00000261654|ADGRD1	REV__ENSG00000111452|ENST00000261654|ADGRD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.2499084472656	2	507.735606	1013.45666	-0.70776	-0.00035935	4.0243	0.0020433	3.3165	0.0016839	507.7374123864699	49.484	0.61401	49.484	49.33	49.944	0					21	13	2	0	0	0	0.027462	1	3679	3679		14.137	0	1	413390	+		61925	18035	51061	51110	68003	68003					-0.0495316414737772
VQFLRLLT	8	Unmodified	_VQFLRLLT_					0	0	0		ENSG00000089723|ENST00000203664|OTUB2	ENSG00000089723|ENST00000203664|OTUB2	ENSG00000089723|ENST00000203664|OTUB2	MULTI-SECPEP	OvCa9_classI_Rep2	2	494.7940368652344	2	495.310752	988.606951	0.48124	0.00023836	-0.18137	-8.9834E-05	0.29987	0.00014853	495.31031113117655	96.727	1.0323	95.768	95.481	96.513	-0.95857					33	20	2	0	0	0	0.028476	1	8707	8707		12.959	0	1	76460			61926	1826	51062	51111	68004	68004					0.11219227582216718
VQFLRLLT	8	Unmodified	_VQFLRLLT_					0	0	0		ENSG00000089723|ENST00000203664|OTUB2	ENSG00000089723|ENST00000203664|OTUB2	ENSG00000089723|ENST00000203664|OTUB2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	495.310752	988.606951	-0.60048	-0.00029742	0.12039	5.9629E-05	-0.48009	-0.00023779	495.3105295532567	97.817	1.0168	96.057	95.865	96.882	-1.7595	0.09986	9.5097E-05	NaN	12.959	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98676			61927	1826	51062	51111							0.11219227582216718
VQFLVYQLL	9	Unmodified	_VQFLVYQLL_					0	0	0		ENST00000495277.1_1_22:50705667-50705907:-|nuORF;nc|ENSG00000185386|Q15759-3|MAPK11;ENSG00000185386|ENST00000330651|MAPK11	ENST00000495277.1_1_22:50705667-50705907:-|nuORF	ENST00000495277.1_1_22:50705667-50705907:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.8013305664062	2	561.831517	1121.64848	1.9719	0.0011079	3.4221	0.0019227	5.394	0.0030305	561.8333733803233	130.66	1.0008	130.66	130.34	131.34	0					26	19	2	0	0	0	0.027456	1	15168	15168		30.504	12.179	1	113680			61928	8251	51063	51112	68005	68005					0.09252363550899645
VQFQPHSSTLM	11	Unmodified	_VQFQPHSSTLM_					0	0	0			REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|60|2|sense	REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|60|2|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	637.8507690429688	2	637.81353	1273.61251	-3.0624	-0.0019532	1.5262	0.00097346	-1.5361	-0.00097976	638.3167544306551	151.84	1.1583	150.4	149.93	151.08	-1.4351					41	24	2	0	0	0	0.026258	1	15032	15032		19.997	4.355	1	13898	+		61929	28391	51064	51113	68006	68006					-0.013354616882907067
VQFSNTLLDI	10	Unmodified	_VQFSNTLLDI_					0	0	0		nc|ENSG00000143552|Q5VU65-2|NUP210L;ENSG00000143552|ENST00000368559|NUP210L	nc|ENSG00000143552|Q5VU65-2|NUP210L	nc|ENSG00000143552|Q5VU65-2|NUP210L	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.6341552734375	2	575.311146	1148.60774	1.7961	0.0010333	1.3726	0.00078968	3.1687	0.001823	575.3123099134658	87.03	1.286	87.03	86.844	88.13	0					66	30	4	0	0	0	0.028051	1	9216	9216		68.846	0	1	4199600			61930	5070	51065	51114	68007	68007					0.039379774406370416
VQFTVKLRL	9	Unmodified	_VQFTVKLRL_					0	0	0		nc|ENSG00000115415|P42224-2|STAT1;ENSG00000115415|ENST00000361099|STAT1	nc|ENSG00000115415|P42224-2|STAT1	nc|ENSG00000115415|P42224-2|STAT1	MULTI-MSMS	OvCa99_classI_Rep5	1	552.3516235351562	2	552.350409	1102.68626	1.9153	0.0010579	-0.07354	-4.062E-05	1.8418	0.0010173	552.3503959762068	98.04	1.3823	98.04	97.654	99.036	0					81	32	4	0	0	0	0.094616	2	10816	10786;10816		98.629	24.374	1	10415000			61931	3094	51066	51115	68008;68009	68009					0.13902874536347554
VQGELQLKL	9	Unmodified	_VQGELQLKL_					0	0	0			REV__ENST00000547988.5_1_12:54115751-54119026:-|nuORF	REV__ENST00000547988.5_1_12:54115751-54119026:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	514.3104858398438	2	514.310949	1026.60735	0.77543	0.00039881	-1.0172	-0.00052318	-0.24181	-0.00012437	514.3103043600519	105.05	2.4418	103.7	103	105.44	-1.3482					111	46	4	0	0	0	0.14998	1	7363	7363		84.916	0	1	848940	+		61932	16500	51067	51116	68010	68010					0.09510602511409161
VQGGVIQHI	9	Unmodified	_VQGGVIQHI_					0	0	0		ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	ENSG00000163328|ENST00000392552|GPR155	MULTI-MSMS	OvCa99_classI_Rep5	1	475.7757873535156	2	475.774534	949.534515	0.7273	0.00034603	-0.24859	-0.00011827	0.47871	0.00022776	475.77421462011984	67.169	0.70614	67.169	66.898	67.604	0					36	17	3	0	0	0	0.068524	1	6263	6263		108.09	39.603	1	3424000			61933	6288	51068	51117	68011	68011					0.05772893508674315
VQGIINKR	8	Unmodified	_VQGIINKR_					0	0	0			REV__nc|ENSG00000085511|Q9Y6R4-2|MAP3K4	REV__nc|ENSG00000085511|Q9Y6R4-2|MAP3K4	MULTI-SECPEP	OvCa9_classI_Rep3	3	464.2794494628906	2	464.290351	926.566149	-1.1135	-0.00051698	2.8326	0.0013151	1.7191	0.00079815	464.2919697325989	83.496	0.33481	81.235	80.967	81.302	-2.261					11	6	3	0	0	0	0.028476	1	4782	4782		38.806	16.846	1	80217	+		61934	17135	51069	51118	68012	68012					0.0999288626261432
VQGLAARVVR	10	Unmodified	_VQGLAARVVR_					0	0	0			REV__ENST00000479282.5_1_1:16272460-16274990:-|nuORF	REV__ENST00000479282.5_1_1:16272460-16274990:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	534.8109130859375	2	534.835457	1067.65636	0.15551	8.3171E-05	-2.8305	-0.0015138	-2.675	-0.0014307	534.8343990022325	91.511	0.21182	90.275	90.114	90.326	-1.2355					5	3	2	0	0	0	0.026956	1	8116	8116		26.693	3.6504	1	4620.5	+		61935	26433	51070	51119	68013	68013					0.12523935591025293
VQGLALITI	9	Unmodified	_VQGLALITI_					0	0	0			REV__ENSG00000157240|ENST00000287934|FZD1	REV__ENSG00000157240|ENST00000287934|FZD1	MULTI-SECPEP	OvCa9_classI_Rep3	3	464.2794494628906	2	464.29731	926.580068	-1.1269	-0.0005232	-0.022555	-1.0472E-05	-1.1494	-0.00053367	464.2971101182206	83.686	0.48732	81.425	81.257	81.745	-2.261					19	10	2	0	0	0	0.027461	1	4782	4782		32.812	10.853	1	119760	+		61936	20515	51071	51120	68014	68014					0.1138411897103424
VQGLIHLLV	9	Unmodified	_VQGLIHLLV_					0	0	0		ENST00000480424.6_1_16:630665-633032:+|nuORF;ENSG00000007541|ENST00000321878|PIGQ;nc|ENSG00000007541|Q9BRB3|PIGQ	ENST00000480424.6_1_16:630665-633032:+|nuORF	ENST00000480424.6_1_16:630665-633032:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.2673645019531	2	496.318577	990.622602	-0.039292	-1.9501E-05	0.47811	0.00023729	0.43881	0.00021779	496.31868324607416	67.397	0.74381	67.397	67.136	67.88	0					45	18	3	0	0	0	0.027462	1	6325	6325		18.324	0	1	1518500			61937	905	51072	51121	68015	68015					0.12691514099287815
VQGRGSYTGM	10	Oxidation (M)	_VQGRGSYTGM(Oxidation (M))_		VQGRGSYTGM(1)		VQGRGSYTGM(77)	0	0	1			REV__chr1:54908858-54991836|266|18.28|0.04|8.99|+|0|TE_info:HERVH-int,HERVH-int_dup94,ERV1,LTR,donor,-,54907642,54908858|None,TMEM61|2	REV__chr1:54908858-54991836|266|18.28|0.04|8.99|+|0|TE_info:HERVH-int,HERVH-int_dup94,ERV1,LTR,donor,-,54907642,54908858|None,TMEM61|2	MULTI-MSMS	OvCa9_classI_Rep2	2	536.2453002929688	2	536.248023	1070.48149	-0.69524	-0.00037282	-3.4239	-0.0018361	-4.1191	-0.0022089	536.246148469639	113.89	3.7057	113.77	113.37	117.07	-0.11777					126	74	2	0	0	0	0.32926	1	10827	10827		77.318	10.888	1	608760	+		61938	15833	51073	51122	68016	68016		383			-0.05092852336292708
VQGVQKAR	8	Unmodified	_VQGVQKAR_					0	0	0			REV__ENST00000531589.5_1_11:65819891-65822828:+|nuORF	REV__ENST00000531589.5_1_11:65819891-65822828:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.9210510253906	2	443.266876	884.519199	0.14314	6.3451E-05	-0.18124	-8.0336E-05	-0.038093	-1.6885E-05	443.26680921638933	37.228	0.64481	37.228	36.84	37.485	0					18	13	2	0	0	0	0.028476	1	1978	1978		18.324	0	1	152240	+		61939	27217	51074	51123	68017	68017					0.07232026711460549
VQHAPSESV	9	Unmodified	_VQHAPSESV_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;ENST00000491769.1_1_2:238233419-238250825:-|nuORF;COL6A3|p.D2676E|1|0.17|ENSG00000163359|chr2:237340888-237340888|G/C|missense_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa99_classI_Rep5	1	477.2378845214844	2	477.237981	952.461409	-0.39032	-0.00018628	-0.20551	-9.8076E-05	-0.59583	-0.00028435	477.2378900542606	40.317	1.4897	40.317	40.06	41.55	0					57	32	4	0	0	0	0.022645	1	2431	2431		143.89	37.472	1	4172700			61940	6293	51075	51124	68018	68018					-0.016722800046181874
VQHDKEQEM	9	Unmodified	_VQHDKEQEM_					0	0	0		ENSG00000156395|ENST00000369701|SORCS3	ENSG00000156395|ENST00000369701|SORCS3	ENSG00000156395|ENST00000369701|SORCS3	MULTI-SECPEP	OvCa9_classI_Rep2	2	572.2960205078125	2	572.258588	1142.50262	-1.1678	-0.00066826	2.8724	0.0016438	1.7046	0.00097549	572.2597520752101	105.53	0.59864	105.09	104.9	105.5	-0.43642					19	11	2	0	0	0	0.027462	1	9823	9823		26.693	3.6504	1	12487			61941	5836	51076	51125	68019	68019					-0.06292887027439065
VQHFCGGN	8	Unmodified	_VQHFCGGN_					0	0	0		ENST00000483495.5_1_20:34218821-34220289:-|nuORF;ENSG00000214078|ENST00000397443|CPNE1	ENST00000483495.5_1_20:34218821-34220289:-|nuORF	ENST00000483495.5_1_20:34218821-34220289:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	431.19012451171875	2	431.187237	860.359921	0.065412	2.8205E-05	3.7176	0.001603	3.783	0.0016312	431.18882240621156	53.343	1.3769	50.135	49.795	51.171	-3.208					58	26	5	0	0	0	0.74229	1	3256	3256		30.504	2.2494	1	244170			61942	9163	51077	51126	68020	68020					-0.07584429908160928
VQHFCGGN	8	Unmodified	_VQHFCGGN_					0	0	0		ENST00000483495.5_1_20:34218821-34220289:-|nuORF;ENSG00000214078|ENST00000397443|CPNE1	ENST00000483495.5_1_20:34218821-34220289:-|nuORF	ENST00000483495.5_1_20:34218821-34220289:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	431.187237	860.359921	-1.5537	-0.00066994	5.586	0.0024086	4.0323	0.0017387	431.18953764741303	53.268	1.2396	50.454	49.985	51.225	-2.8139	0.15948	0.0008439	NaN	30.504	35	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	40590			61943	9163	51077	51126							-0.07584429908160928
VQHFLWMVRLY	11	Unmodified	_VQHFLWMVRLY_					0	0	0		sp|P09721|US12_HCMVAUncharacterizedproteinHVLF6OS=Humancytomegalovirus(strainAD169)OX=10360GN=US12PE=3SV=1;sp|F5HE44|US12_HCMVMUncharacterizedproteinUS12OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US12PE=3SV=1	sp|P09721|US12_HCMVAUncharacterizedproteinHVLF6OS=Humancytomegalovirus(strainAD169)OX=10360GN=US12PE=3SV=1	sp|P09721|US12_HCMVAUncharacterizedproteinHVLF6OS=Humancytomegalovirus(strainAD169)OX=10360GN=US12PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.7771301269531	3	497.93583	1490.78566	-0.35952	-0.00017902	-0.59838	-0.00029796	-0.9579	-0.00047697	497.93534811642877	47.475	0.55967	47.475	47.208	47.768	0					30	12	4	0	0	0	0.026145	1	3390	3390		23.378	6.8481	1	420440			61944	32866	51078	51127	68021	68021					0.05989949158811214
VQHGKILL	8	Unmodified	_VQHGKILL_					0	0	0			REV__nc|ENSG00000170500|Q1L5Z9-2|LONRF2	REV__nc|ENSG00000170500|Q1L5Z9-2|LONRF2	MULTI-MSMS	OvCa9_classI_Rep4_	4	454.2901611328125	2	454.28982	906.565087	0.33032	0.00015006	-0.13625	-6.1898E-05	0.19407	8.8163E-05	454.28949180336747	98.685	1.3919	96.306	95.921	97.313	-2.3786					60	26	4	0	0	0	0.71369	1	8783	8783		40.573	0	1	348540	+		61945	21544	51079	51128	68022	68022					0.10806671893703879
VQHGKILL	8	Unmodified	_VQHGKILL_					0	0	0			REV__nc|ENSG00000170500|Q1L5Z9-2|LONRF2	REV__nc|ENSG00000170500|Q1L5Z9-2|LONRF2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	454.28982	906.565087	1.6679	0.00075772	-1.0143	-0.00046078	0.65363	0.00029694	454.2889737831061	97.104	1.7668	96.145	95.825	97.592	-0.95856	-0.08521	-0.00069661	NaN	40.573	74	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	295050	+		61946	21544	51079	51128							0.10806671893703879
VQHGKILL	8	Unmodified	_VQHGKILL_					0	0	0			REV__nc|ENSG00000170500|Q1L5Z9-2|LONRF2	REV__nc|ENSG00000170500|Q1L5Z9-2|LONRF2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	454.28982	906.565087	-0.31399	-0.00014264	0.57335	0.00026047	0.25936	0.00011782	454.28975755321227	97.999	1.5865	96.24	95.913	97.5	-1.7595	0.0094571	0.00074589	NaN	40.573	64	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	371860	+		61947	21544	51079	51128							0.10806671893703879
VQHGKILL	8	Unmodified	_VQHGKILL_					0	0	0			REV__nc|ENSG00000170500|Q1L5Z9-2|LONRF2	REV__nc|ENSG00000170500|Q1L5Z9-2|LONRF2	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	454.28982	906.565087	0.33032	0.00015006	-0.13625	-6.1898E-05	0.19407	8.8163E-05	454.28949180336747	98.685	1.3919	96.306	95.921	97.313	-2.3786	0.075753	0.00010116	NaN	40.573	60	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	348540	+		61948	21544	51079	51128							0.10806671893703879
VQHGQSLLQ	9	Unmodified	_VQHGQSLLQ_					0	0	0			REV__ENST00000489995.1_1_3:171483216-171489014:-|nuORF	REV__ENST00000489995.1_1_3:171483216-171489014:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	505.2756652832031	2	505.274898	1008.53524	-1.8695	-0.0009446	1.2197	0.0006163	-0.64975	-0.0003283	505.2754531740072	84.757	1.4423	83.211	82.797	84.239	-1.5462					73	28	4	0	0	0	0.28934	1	7301	7301		64.207	0.901	1	807860	+		61949	26647	51080	51129	68023	68023					0.03131688157714052
VQHLHGLFA	9	Unmodified	_VQHLHGLFA_					0	0	0			REV__ENST00000470928.3_1_1:167334720-167353117:+|nuORF	REV__ENST00000470928.3_1_1:167334720-167353117:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.2647705078125	2	511.282526	1020.5505	1.0023	0.00051246	-0.60021	-0.00030688	0.40209	0.00020558	511.2831837585952	132.53	0.23972	132.53	132.36	132.6	0					6	4	2	0	0	0	0.027462	1	15404	15404		20.482	1.1219	1	20461	+		61950	19821	51081	51130	68024	68024					0.04104599745562609
VQHSIITDL	9	Unmodified	_VQHSIITDL_					0	0	0		ENSG00000062822|ENST00000440232|POLD1	ENSG00000062822|ENST00000440232|POLD1	ENSG00000062822|ENST00000440232|POLD1	MULTI-MSMS	OvCa99_classI_Rep5	1	513.286376953125	2	513.284931	1024.55531	3.0686	0.0015751	2.5567	0.0013123	5.6253	0.0028874	513.2861142691663	88.015	1.3753	88.015	87.628	89.004	0					113	32	6	0	0	0	0.1804	1	9383	9383		79.713	8.4169	1	11224000			61951	1281	51082	51131	68025	68025					0.04401439097682669
VQHTYSCKV	9	Unmodified	_VQHTYSCKV_					0	0	0		ENSG00000188157|ENST00000379370|AGRN;nc|ENSG00000188157|O00468-7|AGRN;nc|ENSG00000188157|O00468-3|AGRN;nc|ENSG00000188157|O00468-5|AGRN;nc|ENSG00000188157|O00468-4|AGRN;nc|ENSG00000188157|O00468|AGRN;AGRN|p.P119Hfs*38|1|0.13|ENSG00000188157|chr1:1022354-1022355|-/A|frameshift_variant	ENSG00000188157|ENST00000379370|AGRN	ENSG00000188157|ENST00000379370|AGRN	MULTI-MSMS	OvCa9_classI_Rep3	3	532.7650756835938	2	532.763309	1063.51206	1.0974	0.00058466	-1.2286	-0.00065458	-0.13123	-6.9913E-05	532.7625104763312	113.64	2.2165	112.57	112.01	114.22	-1.0753					113	43	4	0	0	0	0.48047	1	8342	8342		44.377	0.26039	1	496900			61952	8454	51083	51132	68026	68026					-0.017150739512771906
VQHYHMKT	8	Unmodified	_VQHYHMKT_					0	0	0		ENSG00000008438|ENST00000008938|PGLYRP1	ENSG00000008438|ENST00000008938|PGLYRP1	ENSG00000008438|ENST00000008938|PGLYRP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.8009033203125	2	522.258194	1042.50183	-0.63202	-0.00033008	3.5477	0.0018528	2.9157	0.0015228	522.2599051864096	33.34	0.8963	30.63	30.42	31.316	-2.7097					31	17	3	0	0	0	0.028476	1	1174	1174		27.882	0	1	84727			61953	920	51084	51133	68027	68027					-0.017716368858373244
VQIEFGFTE	9	Unmodified	_VQIEFGFTE_					0	0	0			REV__ENST00000462109.1_1_2:158290860-158300532:-|nuORF	REV__ENST00000462109.1_1_2:158290860-158300532:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.249267578125	2	535.263665	1068.51278	-2.2947	-0.0012282	0.1327	7.1029E-05	-2.162	-0.0011572	535.2637096470283	119.81	1.3327	119.64	119.35	120.68	-0.17137					51	26	3	0	0	0	0.027461	1	11551	11551		40.778	3.6191	1	68081	+		61954	26108	51085	51134	68028	68028					-0.018739560305448322
VQIFIQLGQ	9	Unmodified	_VQIFIQLGQ_					0	0	0			REV__ENSG00000203995|ENST00000371528|ZYG11A	REV__ENSG00000203995|ENST00000371528|ZYG11A	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3045654296875	2	523.305667	1044.59678	-2.1227	-0.0011108	-1.8084	-0.00094634	-3.9311	-0.0020572	523.3044946336834	139.22	4.874	138.16	136.7	141.58	-1.0595					289	98	5	0	0	0	0.56889	1	11685	11685		35.618	5.1146	1	183010	+		61955	23120	51086	51135	68029	68029					0.0762661985700106
VQIHPCTQL	9	Unmodified	_VQIHPCTQL_					0	0	0		ENST00000495002.5_1_19:54710350-54711440:+|nuORF	ENST00000495002.5_1_19:54710350-54711440:+|nuORF	ENST00000495002.5_1_19:54710350-54711440:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	519.7737426757812	2	519.773677	1037.5328	1.0842	0.00056353	-0.45258	-0.00023524	0.63159	0.00032829	519.7733182741239	128.34	2.792	127.25	126.36	129.15	-1.0933					96	55	4	0	0	0	0.51865	1	10129	10129		40.778	0	1	251840			61956	12766	51087	51136	68030	68030					0.015535164283846825
VQIHQVAQV	9	Unmodified	_VQIHQVAQV_					0	0	0		ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	ENSG00000119681|ENST00000261978|LTBP2	MULTI-MSMS	OvCa99_classI_Rep5	1	511.294921875	2	511.293091	1020.57163	0.13336	6.8188E-05	0.19736	0.00010091	0.33072	0.0001691	511.2929027541233	65.004	0.59665	65.004	64.75	65.347	0					24	14	2	0	0	0	0.062324	1	5941	5941		111.65	29.408	1	1521400			61957	3379	51088	51137	68031	68031					0.06216565054421608
VQIIAIGADEL	11	Unmodified	_VQIIAIGADEL_					0	0	0			REV__tr|A0A553SR59|A0A553SR59_NIACI5-methyltetrahydropteroyltriglutamate--homocysteinemethyltransferaseOS=NialliacirculansOX=1397GN=metEPE=3SV=1	REV__tr|A0A553SR59|A0A553SR59_NIACI5-methyltetrahydropteroyltriglutamate--homocysteinemethyltransferaseOS=NialliacirculansOX=1397GN=metEPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	571.3284912109375	2	571.326796	1140.63904	0.29022	0.00016581	-0.12854	-7.3438E-05	0.16168	9.2372E-05	571.3265621465952	142	1.046	140.54	140.24	141.28	-1.4627					43	19	3	0	0	0	0.68021	1	13886	13886		36.447	4.8125	1	89796	+		61958	30695	51089	51138	68032	68032					0.07434550474727075
VQIIAIGADEL	11	Unmodified	_VQIIAIGADEL_					0	0	0			REV__tr|A0A553SR59|A0A553SR59_NIACI5-methyltetrahydropteroyltriglutamate--homocysteinemethyltransferaseOS=NialliacirculansOX=1397GN=metEPE=3SV=1	REV__tr|A0A553SR59|A0A553SR59_NIACI5-methyltetrahydropteroyltriglutamate--homocysteinemethyltransferaseOS=NialliacirculansOX=1397GN=metEPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	571.326796	1140.63904	-2.7527	-0.0015727	2.5699	0.0014682	-0.18289	-0.00010449	571.3281985069898	141.6	0.89131	140.59	140.24	141.13	-1.0106	-0.03344	0.0012764	NaN	36.447	39	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46260	+		61959	30695	51089	51138							0.07434550474727075
VQIIAIGADEL	11	Unmodified	_VQIIAIGADEL_					0	0	0			REV__tr|A0A553SR59|A0A553SR59_NIACI5-methyltetrahydropteroyltriglutamate--homocysteinemethyltransferaseOS=NialliacirculansOX=1397GN=metEPE=3SV=1	REV__tr|A0A553SR59|A0A553SR59_NIACI5-methyltetrahydropteroyltriglutamate--homocysteinemethyltransferaseOS=NialliacirculansOX=1397GN=metEPE=3SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	571.326796	1140.63904	0.29022	0.00016581	-0.12854	-7.3438E-05	0.16168	9.2372E-05	571.3265621465952	142	1.046	140.54	140.24	141.28	-1.4627	-0.086324	-0.001807	NaN	36.447	43	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	89796	+		61960	30695	51089	51138							0.07434550474727075
VQIIPCQYLL	10	Unmodified	_VQIIPCQYLL_					0	0	0		ENSG00000108510|ENST00000397786|MED13;MED13|p.H1710Lfs*14|1|0.12|ENSG00000108510|chr17:61961717-61961718|-/AGAGCTCAAATTTGTGAAAAACAGATCTCCTTAAT|frameshift_variant	ENSG00000108510|ENST00000397786|MED13	ENSG00000108510|ENST00000397786|MED13	MULTI-MSMS	OvCa9_classI_Rep4_	4	595.3370971679688	2	595.33611	1188.65767	-2.0554	-0.0012237	3.5881	0.0021361	1.5327	0.00091246	595.3381573566538	149.58	1.2857	148.14	147.64	148.93	-1.4344					61	25	3	0	0	0	0.58282	1	14781	14781		44.117	8.4985	1	176250			61961	2659	51090	51139	68033	68033					0.07088388844908877
VQIKMVQP	8	Unmodified	_VQIKMVQP_					0	0	0			REV__ENSG00000150893|ENST00000280481|FREM2	REV__ENSG00000150893|ENST00000280481|FREM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.7576599121094	2	471.775688	941.536823	-0.72345	-0.00034131	-3.3057	-0.0015596	-4.0292	-0.0019009	471.77398513287886	65.992	0.74335	65.992	65.748	66.491	0					29	18	2	0	0	0	0.028476	1	6114	6114		25.45	0	1	380070	+		61962	20206	51091	51140	68034	68034					0.06371605922106482
VQILGLMQK	9	Unmodified	_VQILGLMQK_					0	0	0		tr|A0A7D7A330|A0A7D7A330_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22105PE=4SV=1	tr|A0A7D7A330|A0A7D7A330_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22105PE=4SV=1	tr|A0A7D7A330|A0A7D7A330_9CLOTGHKLdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22105PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.3121337890625	2	515.309895	1028.60524	0.67052	0.00034553	2.3918	0.0012325	3.0623	0.001578	515.3111559710834	35.314	1.6978	32.465	32.19	33.887	-2.849					108	33	5	0	0	0	0.55588	1	1215	1215		37.159	0.71236	1	2437400			61963	36102	51092	51141	68035	68035					0.09207850501957182
VQIQGWGPL	9	Unmodified	_VQIQGWGPL_					0	0	0		ENST00000585348.1_1_17:42428425-42428671:+|nuORF	ENST00000585348.1_1_17:42428425-42428671:+|nuORF	ENST00000585348.1_1_17:42428425-42428671:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.822265625	2	499.276909	996.539266	-0.50779	-0.00025353	-4.3932	-0.0021934	-4.901	-0.0024469	499.2747793903656	61.309	0.55439	61.309	61.071	61.626	0					19	12	3	0	0	0	0.027449	1	5400	5400		50.025	18.07	1	2288500			61964	14027	51093	51142	68036	68036					0.04085777651414446
VQISAPMFLL	10	Unmodified	_VQISAPMFLL_					0	0	0		ENSG00000204687|ENST00000377127|MAS1L	ENSG00000204687|ENST00000377127|MAS1L	ENSG00000204687|ENST00000377127|MAS1L	MULTI-MSMS	OvCa99_classI_Rep5	1	559.8180541992188	2	559.817553	1117.62055	2.0741	0.0011611	-3.468	-0.0019415	-1.3939	-0.00078031	559.8156915922438	133.1	8.2265	133.1	132.6	140.83	0					464	175	6	0	0	0	0.48198	1	16052	16052		56.721	1.2168	1	47573000			61965	9019	51094	51143	68037	68037					0.06644717299172953
VQIVGILNV	9	Unmodified	_VQIVGILNV_					0	0	0			REV__ENSG00000025423|ENST00000322165|HSD17B6	REV__ENSG00000025423|ENST00000322165|HSD17B6	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.8028564453125	2	477.80276	953.590967	-2.11	-0.0010082	2.2995	0.0010987	0.18954	9.0563E-05	477.8036012396216	149.24	0.90439	147.81	147.57	148.48	-1.4344					38	18	3	0	0	0	0.56889	1	14758	14758		35.618	5.1146	1	51060	+		61966	16567	51095	51144	68038	68038					0.11231521345325746
VQKFTPSH	8	Unmodified	_VQKFTPSH_					0	0	0		ENSG00000135426|ENST00000449076|TESPA1;nc|ENSG00000135426|A2RU30-2|TESPA1;nc|ENSG00000135426|A2RU30-3|TESPA1	ENSG00000135426|ENST00000449076|TESPA1	ENSG00000135426|ENST00000449076|TESPA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	472.21905517578125	2	472.253434	942.492316	-0.19689	-9.2981E-05	3.9732	0.0018764	3.7763	0.0017834	472.25541703262877	47.737	0.4758	47.737	47.465	47.941	0					24	10	3	0	0	0	0.028476	1	3420	3420		12.207	0	1	811680			61967	4378	51096	51145	68039	68039					0.018769181002767255
VQKGDVVFPN	10	Unmodified	_VQKGDVVFPN_					0	0	0		tr|A0A553SLH0|A0A553SLH0_NIACIDUF4397domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20595PE=4SV=1	tr|A0A553SLH0|A0A553SLH0_NIACIDUF4397domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20595PE=4SV=1	tr|A0A553SLH0|A0A553SLH0_NIACIDUF4397domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20595PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.8062744140625	2	551.798206	1101.58186	-0.91287	-0.00050372	-2.9915	-0.0016507	-3.9044	-0.0021544	551.7965520545409	42.146	0.34788	42.146	41.982	42.329	0					19	7	3	0	0	0	0.026782	1	2674	2674		54.776	5.3348	1	366270			61968	33721	51097	51146	68040	68040					0.03513127989003806
VQKIRAGRSTP	11	Unmodified	_VQKIRAGRSTP_					0	0	0		ENST00000483474.1_1_1:100731850-100732734:+|nuORF;ENST00000498617.5_1_1:100731850-100733645:+|nuORF;ENSG00000137996|ENST00000370128|RTCA;nc|ENSG00000137996|O00442-2|RTCA	ENST00000483474.1_1_1:100731850-100732734:+|nuORF	ENST00000483474.1_1_1:100731850-100732734:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	404.9117126464844	3	404.910561	1211.70985	2.0403	0.00082616	1.3666	0.00055337	3.407	0.0013795	404.9110205708817	66.24	1.1195	63.294	62.857	63.976	-2.9459					44	21	3	0	0	0	0.71048	1	2714	2714		26.063	0.9374	1	49827			61969	4644	51098	51147	68041	68041					0.11246688302890107
VQKKINAIE	9	Unmodified	_VQKKINAIE_					0	0	0			REV__CON__Q6IFZ6	REV__CON__Q6IFZ6	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.3184814453125	2	521.816399	1041.61824	0.81483	0.00042519	-0.29286	-0.00015282	0.52198	0.00027238	521.815811537448	93.471	0.28578	93.471	93.263	93.549	0					10	6	2	0	0	0	0.027433	1	10115	10115		26.693	16.987	1	251210	+	+	61970	16218	51099	51148	68042	68042					0.0991000488568261
VQKKINAIE	9	Unmodified	_VQKKINAIE_					0	0	0			REV__CON__Q6IFZ6	REV__CON__Q6IFZ6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.816399	1041.61824	-0.094719	-4.9426E-05	0.65375	0.00034114	0.55903	0.00029171	522.3183529919047	94.681	0.39098	93.582	93.411	93.802	-1.0995	-0.022152	-0.00014991	NaN	26.693	12	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22052	+	+	61971	16218	51099	51148							0.0991000488568261
VQKKINAIE	9	Unmodified	_VQKKINAIE_					0	0	0			REV__CON__Q6IFZ6	REV__CON__Q6IFZ6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	521.816399	1041.61824	-0.68455	-0.00035721	1.6181	0.00084437	0.93359	0.00048716	521.817223774949	95.551	0.44672	93.678	93.487	93.934	-1.873	0.074365	0.00085656	NaN	26.693	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25288	+	+	61972	16218	51099	51148							0.0991000488568261
VQKKIRSVEL	10	Unmodified	_VQKKIRSVEL_					0	0	0			REV__ENSG00000178409|ENST00000369042|BEND3	REV__ENSG00000178409|ENST00000369042|BEND3	MULTI-MSMS	OvCa9_classI_Rep2	2	600.3755493164062	2	600.377155	1198.73976	2.4727	0.0014845	-2.4024	-0.0014424	0.070273	4.219E-05	600.3755689581569	26.426	0.84442	23.716	23.517	24.362	-2.7097					46	24	3	0	0	0	0.69073	1	362	362		31.53	1.2121	1	69653	+		61973	22058	51100	51149	68043	68043					0.14833627248231096
VQKLSEFL	8	Unmodified	_VQKLSEFL_					0	0	0		ABCC8|p.I1235Dfs*20|1|0.2|ENSG00000006071|chr11:17398359-17398389|TGTTGGCAGCTGTGAGGAAGAGGGAAGCAAT/-|frameshift_variant;ENSG00000006071|ENST00000389817|ABCC8;nc|ENSG00000006071|Q09428-2|ABCC8	ABCC8|p.I1235Dfs*20|1|0.2|ENSG00000006071|chr11:17398359-17398389|TGTTGGCAGCTGTGAGGAAGAGGGAAGCAAT/-|frameshift_variant	ABCC8|p.I1235Dfs*20|1|0.2|ENSG00000006071|chr11:17398359-17398389|TGTTGGCAGCTGTGAGGAAGAGGGAAGCAAT/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	482.27862548828125	2	482.279118	962.543683	0.49626	0.00023934	-0.7177	-0.00034613	-0.22144	-0.0001068	482.2786603839034	114.36	1.4421	112.96	112.57	114.02	-1.4007					54	27	3	0	0	0	0.66057	1	10630	10630		51.335	0	1	116590			61974	5	51101	51150	68044	68044					0.06091242074330694
VQKLTVLTY	9	Unmodified	_VQKLTVLTY_					0	0	0		tr|A0A553SMV8|A0A553SMV8_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_23295PE=4SV=1	tr|A0A553SMV8|A0A553SMV8_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_23295PE=4SV=1	tr|A0A553SMV8|A0A553SMV8_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_23295PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.8218383789062	2	532.82115	1063.62775	-0.71536	-0.00038116	-0.14523	-7.7384E-05	-0.8606	-0.00045855	532.8208748491254	115.49	1.0886	114.09	113.82	114.91	-1.3977					40	21	3	0	0	0	0.55011	1	10770	10770		37.812	0.65241	1	138760			61975	33876	51102	51151	68045	68045					0.09847773171213703
VQKNIDQQI	9	Unmodified	_VQKNIDQQI_					0	0	0		TRIM35-PRPF38B|1|fusion;ENSG00000134186|ENST00000370025|PRPF38B	TRIM35-PRPF38B|1|fusion	TRIM35-PRPF38B|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	543.3032836914062	2	543.301113	1084.58767	-0.4472	-0.00024296	-0.10311	-5.6018E-05	-0.5503	-0.00029898	543.3010382775714	53.147	0.69082	53.147	52.873	53.564	0					24	13	2	0	0	0	0.010478	1	4204	4204		167.23	27.258	1	3740300			61976	36276	51103	51152	68046	68046					0.04876226500641678
VQKSLQETI	9	Unmodified	_VQKSLQETI_					0	0	0		ENSG00000119777|ENST00000238788|TMEM214;nc|ENSG00000119777|Q6NUQ4-2|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	MULTI-MSMS	OvCa99_classI_Rep5	1	523.29833984375	2	523.298039	1044.58152	-0.76805	-0.00040192	0.68494	0.00035843	-0.083115	-4.3494E-05	523.2982603822487	61.261	0.72165	61.261	60.943	61.665	0					30	16	4	0	0	0	0.13326	1	5382	5382		88.177	15.298	1	1398300			61977	3394	51104	51153	68047	68047					0.06101708269147821
VQLEPVAAPPL	11	Unmodified	_VQLEPVAAPPL_					0	0	0			REV__ENST00000526301.5_1_1:110170404-110170461:+|nuORF	REV__ENST00000526301.5_1_1:110170404-110170461:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3305053710938	2	567.331882	1132.64921	-0.48412	-0.00027465	-3.1025	-0.0017602	-3.5866	-0.0020348	567.3299446868054	145.54	4.8872	144.11	142.68	147.57	-1.4357					247	95	4	0	0	0	0.71191	1	14230	14230		25.574	2.0514	1	208760	+		61978	27135	51105	51154	68048	68048					0.08819158199935373
VQLFNAADID	10	Unmodified	_VQLFNAADID_					0	0	0			REV__GAS2L2|p.V668Wfs*42|1|0.05|ENSG00000270765|chr17:35745496-35745496|T/-|frameshift_variant	REV__GAS2L2|p.V668Wfs*42|1|0.05|ENSG00000270765|chr17:35745496-35745496|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.2809448242188	2	553.279846	1104.54514	-0.015512	-8.5826E-06	0.1845	0.00010208	0.16899	9.3498E-05	553.2794144098413	62.276	1.4469	58.818	58.244	59.691	-3.4577					88	29	5	0	0	0	0.40664	1	4317	4317		67.494	5.3863	1	544500	+		61979	23606	51106	51155	68049	68049					-0.0029516862759919604
VQLFNAADID	10	Unmodified	_VQLFNAADID_					0	0	0			REV__GAS2L2|p.V668Wfs*42|1|0.05|ENSG00000270765|chr17:35745496-35745496|T/-|frameshift_variant	REV__GAS2L2|p.V668Wfs*42|1|0.05|ENSG00000270765|chr17:35745496-35745496|T/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	553.279846	1104.54514	-0.66111	-0.00036578	1.0053	0.00055622	0.3442	0.00019044	553.2797348326826	61.685	1.0196	58.926	58.464	59.483	-2.7593	0.053574	0.00051517	NaN	67.494	63	19	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95399	+		61980	23606	51106	51155							-0.0029516862759919604
VQLKPGEKPV	10	Unmodified	_VQLKPGEKPV_					0	0	0		ENSG00000133997|ENST00000256379|MED6;nc|ENSG00000133997|O75586-2|MED6	ENSG00000133997|ENST00000256379|MED6	ENSG00000133997|ENST00000256379|MED6	MULTI-MSMS	OvCa9_classI_Rep3	3	547.8259887695312	2	547.832049	1093.64954	-6.0457	-0.003312	-4.2018	-0.0023019	-10.248	-0.0056139	547.8295905768617	154.78	1.79	153.77	152.92	154.71	-1.0076					93	40	3	0	0	0	0.77834	1	13271	13271		21.686	2.3258	1	69775			61981	4248	51107	51156	68050	68050					0.10646577919806077
VQLLAKVKP	9	Unmodified	_VQLLAKVKP_					0	0	0			REV__ENST00000579114.5_1_17:10633139-10657581:+|nuORF	REV__ENST00000579114.5_1_17:10633139-10657581:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3334045410156	2	498.334227	994.653902	1.2643	0.00063007	-1.8659	-0.00092985	-0.60157	-0.00029978	498.3332884380841	124.71	3.4398	123.66	123.27	126.71	-1.0519					179	65	5	0	0	0	0.55588	1	9804	9804		37.159	3.6435	1	3929400	+		61982	27809	51108	51157	68051	68051					0.15636087133373167
VQLLGKLFGT	10	Unmodified	_VQLLGKLFGT_					0	0	0			REV__nc|ENSG00000146039|Q9Y2C5-3|SLC17A4	REV__nc|ENSG00000146039|Q9Y2C5-3|SLC17A4	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.3262329101562	2	538.329142	1074.64373	-6.8958	-0.0037122	3.0059	0.0016182	-3.8899	-0.002094	538.3306472316852	159.34	1.4158	157.75	157.44	158.85	-1.5859					96	33	4	0	0	0	0.79213	1	15754	15754		19.997	0	1	453340	+		61983	19993	51109	51158	68052	68052					0.10939479408125408
VQLLPHVKL	9	Unmodified	_VQLLPHVKL_					0	0	0			REV__ENST00000496455.6_1_3:155633889-155633973:+|nuORF	REV__ENST00000496455.6_1_3:155633889-155633973:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	523.8412475585938	2	523.839677	1045.6648	2.4091	0.001262	-0.40573	-0.00021254	2.0034	0.0010495	523.8394983904677	99.097	3.9949	99.097	98.638	102.63	0					211	95	5	0	0	0	0.21395	1	11036	11036		73.975	2.5968	1	55507000	+		61984	26759	51110	51159	68053	68053					0.14379489507655308
VQLNRPGSK	9	Unmodified	_VQLNRPGSK_					0	0	0			REV__nc|ENSG00000111799|Q99715-4|COL12A1	REV__nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.8009948730469	2	499.790715	997.566878	-1.5113	-0.00075531	1.884	0.00094158	0.3727	0.00018627	499.79122633351864	52.418	0.98626	49.605	49.246	50.232	-2.8129					23	19	2	0	0	0	0.027462	1	3456	3456		30.318	0	1	12371	+		61985	18060	51111	51160	68054	68054					0.06799680911660744
VQLNVLVK	8	Unmodified	_VQLNVLVK_					0	0	0			REV__FAM120B|p.D905Vfs*102|1|0.38|ENSG00000112584|chr6:170404570-170404571|-/T|frameshift_variant	REV__FAM120B|p.D905Vfs*102|1|0.38|ENSG00000112584|chr6:170404570-170404571|-/T|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.7445983886719	2	456.797478	911.580402	0.27025	0.00012345	0.47327	0.00021619	0.74351	0.00033964	456.7975082029394	105.42	0.52471	105.42	105.18	105.7	0					24	11	3	0	0	0	0.028476	1	11862	11862		30.504	5.0535	1	773430	+		61986	28125	51112	51161	68055	68055					0.12107538690884212
VQLPNKLK	8	Unmodified	_VQLPNKLK_					0	0	0			REV__nc|ENSG00000196730|P53355-4|DAPK1	REV__nc|ENSG00000196730|P53355-4|DAPK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.2496337890625	2	470.302927	938.591301	0.011956	5.623E-06	-0.16076	-7.5604E-05	-0.1488	-6.9981E-05	470.3026810958806	51.187	0.3816	51.187	50.993	51.374	0					15	8	2	0	0	0	0.028476	1	3920	3920		31.955	6.5047	1	494060	+		61987	22860	51113	51162	68056	68056					0.11954941065164348
VQLQFKPLV	9	Unmodified	_VQLQFKPLV_					0	0	0			REV__ENST00000014930.8_1_12:13128049-13128217:-|nuORF	REV__ENST00000014930.8_1_12:13128049-13128217:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.3072509765625	2	536.331685	1070.64882	0.95049	0.00050978	-0.39686	-0.00021285	0.55363	0.00029693	536.3314044197604	74.538	0.1573	74.538	74.478	74.635	0					5	3	2	0	0	0	0.027462	1	7369	7369		38.806	1.647	1	148710	+		61988	23671	51114	51163	68057	68057					0.11631783270740925
VQLQKFYKDIK	11	Unmodified	_VQLQKFYKDIK_					0	0	0			REV__ENSG00000273749|ENST00000617928|CYFIP1	REV__ENSG00000273749|ENST00000617928|CYFIP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	470.21551513671875	3	470.609889	1408.80784	-0.83147	-0.0003913	-2.1381	-0.0010062	-2.9696	-0.0013975	470.6088058277645	44.222	0.31538	44.222	44.08	44.396	0					8	6	2	0	0	0	0.026204	1	2966	2966		27.644	9.8108	1	85837	+		61989	23618	51115	51164	68058	68058					0.11978452108201054
VQLQVEPEA	9	Unmodified	_VQLQVEPEA_					0	0	0		ENST00000417851.2_1_3:50255182-50255305:+|nuORF;ENSG00000188338|ENST00000614032|SLC38A3	ENST00000417851.2_1_3:50255182-50255305:+|nuORF	ENST00000417851.2_1_3:50255182-50255305:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.7944030761719	2	506.769114	1011.52368	-0.98313	-0.00049822	-2.1449	-0.0010869	-3.128	-0.0015852	507.2673814675378	53.049	0.19474	49.841	49.698	49.893	-3.208					6	3	2	0	0	0	0.027441	1	3218	3218		58.782	7.5893	1	5157			61990	8467	51116	51165	68059	68059					0.018374463437112354
VQLRFCLCET	10	Unmodified	_VQLRFCLCET_					0	0	0		ENST00000498436.2_1_1:145578572-145580415:+|nuORF;ENST00000369299.7_1_1:145575401-145580415:+|nuORF;ENSG00000131788|ENST00000393045|PIAS3	ENST00000498436.2_1_1:145578572-145580415:+|nuORF	ENST00000498436.2_1_1:145578572-145580415:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	606.3580932617188	2	606.299201	1210.58385	1.8774	0.0011383	1.3319	0.00080753	3.2093	0.0019458	606.2999973939583	135.26	1.0411	135.26	134.74	135.78	0					35	22	2	0	0	0	0.026968	1	15703	15703		29.17	9.8101	1	50717			61991	4091	51117	51166	68060	68060					-0.013019025890571356
VQLRINLPL	9	Unmodified	_VQLRINLPL_					0	0	0			REV__MLT2A2_dup201|chr1:206070951-206071492:-|4.984114817840706|0.0926213581955676|5.75|424.0|10|2|sense	REV__MLT2A2_dup201|chr1:206070951-206071492:-|4.984114817840706|0.0926213581955676|5.75|424.0|10|2|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	533.3430786132812	2	533.342584	1064.67061	2.3524	0.0012547	-0.30713	-0.00016381	2.0453	0.0010908	533.3422275901289	108.24	0.8582	108.24	107.94	108.8	0					49	19	4	0	0	0	0.14739	1	12218	12218		85.359	3.0545	1	1895100	+		61992	28672	51118	51167	68061	68061					0.1408658801931324
VQLRLNSI	8	Unmodified	_VQLRLNSI_					0	0	0		nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;PPP2R1A|p.M499*|1|0.2|ENSG00000105568|chr19:52221110-52221110|A/-|frameshift_variant;ENSG00000105568|ENST00000322088|PPP2R1A;nc|ENSG00000137713|P30154-5|PPP2R1B;ENST00000468280.5_1_19:52693376-52714746:+|nuORF	nc|ENSG00000137713|P30154-4|PPP2R1B	nc|ENSG00000137713|P30154-4|PPP2R1B	MULTI-MSMS	OvCa99_classI_Rep5	1	471.7908630371094	2	471.790184	941.565815	2.7046	0.001276	-0.37957	-0.00017908	2.325	0.0010969	471.78985364066017	89.212	1.3003	89.212	88.843	90.143	0					65	31	4	0	0	0	0.082392	2	9539	9509;9539		148.04	13.232	1	9141000			61993	4608	51119	51168	68062;68063	68063					0.0926946654275298
VQLSQGLLL	9	Unmodified	_VQLSQGLLL_					0	0	0			REV__nc|ENSG00000099866|Q13477-3|MADCAM1	REV__nc|ENSG00000099866|Q13477-3|MADCAM1	MULTI-MSMS	OvCa99_classI_Rep5	1	485.8020324707031	2	485.800217	969.585882	1.3451	0.00065347	0.14751	7.1661E-05	1.4926	0.00072513	485.80018279960575	83.128	1.064	83.128	82.736	83.801	0					45	24	3	0	0	0	0.13482	1	8627	8627		87.754	0	1	1273600	+		61994	17337	51120	51169	68064	68064					0.09987217482728283
VQLSWDLSPL	10	Unmodified	_VQLSWDLSPL_					0	0	0		ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	ENSG00000133030|ENST00000651222|MPRIP	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.3113403320312	2	579.313689	1156.61282	-1.698	-0.00098369	-2.1647	-0.001254	-3.8627	-0.0022377	579.3123798976957	100.15	1.4185	97.825	97.315	98.734	-2.3253					83	27	4	0	0	0	0.47142	1	8945	8945		58.23	3.4536	1	1089800			61995	4191	51121	51170	68065	68065					0.040782813032365084
VQLTPSDMNE	10	Unmodified	_VQLTPSDMNE_					0	0	0			REV__ENSG00000042781|ENST00000307340|USH2A	REV__ENSG00000042781|ENST00000307340|USH2A	MULTI-MSMS	OvCa99_classI_Rep5	1	567.2606201171875	2	567.260796	1132.50704	2.5982	0.0014739	-2.225	-0.0012621	0.37324	0.00021173	567.2593337675399	121.68	0.88329	121.68	121.34	122.22	0					50	18	4	0	0	0	0.50999	1	14024	14024		52.937	1.744	1	1472300	+		61996	16642	51122	51171	68066	68066					-0.05391422604566287
VQLTYDTSKL	10	Unmodified	_VQLTYDTSKL_					0	0	0			REV__ENST00000222573.4_1_7:20449902-20450115:+|nuORF	REV__ENST00000222573.4_1_7:20449902-20450115:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	584.317626953125	2	584.316428	1166.6183	2.113	0.0012347	1.0116	0.00059107	3.1246	0.0018257	584.3169576021467	80.19	0.83691	80.19	79.907	80.744	0					54	19	4	0	0	0	0.6349	1	8258	8258		37.812	1.3648	1	8268400	+		61997	23750	51123	51172	68067	68067					0.04165960095042465
VQMFFFVAL	9	Unmodified	_VQMFFFVAL_					0	0	0		ENSG00000172365|ENST00000641342|OR5B2	ENSG00000172365|ENST00000641342|OR5B2	ENSG00000172365|ENST00000641342|OR5B2	MULTI-SECPEP	OvCa9_classI_Rep3	3	550.3263549804688	2	551.293714	1100.57287	-1.3884	-0.0007654	-4.2176	-0.0023252	-5.606	-0.0030906	551.790970469458	87.211	1.4292	85.034	84.431	85.86	-2.1768					100	27	6	0	0	0	0.027462	1	5172	5172		35.201	0	1	151710			61998	7294	51124	51173	68068	68068					0.026610630989580386
VQMIKRDD	8	Unmodified	_VQMIKRDD_					0	0	0			REV__nc|ENSG00000124721|Q96JB1-2|DNAH8	REV__nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-SECPEP	OvCa9_classI_Rep3	3	502.8298645019531	2	502.763309	1003.51206	-0.53923	-0.00027111	-3.2844	-0.0016513	-3.8236	-0.0019224	503.2622618871664	98.968	0.20784	97.283	97.165	97.373	-1.685					5	3	2	0	0	0	0.028476	1	6642	6642		35.618	0	1	8131.4	+		61999	18702	51125	51174	68069	68069					0.010449260487234824
VQMIYGGLFL	10	Unmodified	_VQMIYGGLFL_					0	0	0		tr|A0A553SGF1|A0A553SGF1_NIACIEamAfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_10715PE=3SV=1	tr|A0A553SGF1|A0A553SGF1_NIACIEamAfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_10715PE=3SV=1	tr|A0A553SGF1|A0A553SGF1_NIACIEamAfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_10715PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	571.3218994140625	2	570.809728	1139.6049	0.7843	0.00044769	1.2037	0.00068706	1.988	0.0011347	570.8103705688422	153.07	0.83847	153.07	152.85	153.69	0					37	16	4	0	0	0	0.49049	1	17926	17926		55.504	9.0474	1	289840			62000	33150	51126	51175	68070	68070					0.0406843078210386
VQMVAQLVSE	10	Unmodified	_VQMVAQLVSE_					0	0	0		ENSG00000226174|ENST00000451127|TEX22	ENSG00000226174|ENST00000451127|TEX22	ENSG00000226174|ENST00000451127|TEX22	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.7796630859375	2	552.291899	1102.56925	2.3201	0.0012814	-1.0516	-0.00058081	1.2684	0.00070055	552.291037141126	98.755	1.4051	98.755	98.165	99.57	0					61	33	3	0	0	0	0.026734	1	10945	10945		39.253	7.298	1	3372600			62001	9269	51127	51176	68071	68071					0.022063485344460787
VQMWPWFL	8	Unmodified	_VQMWPWFL_					0	0	0		ENST00000523483.5_2_8:59484817-59488468:+|nuORF;ENST00000522843.5_1_8:59484817-59488468:+|nuORF	ENST00000523483.5_2_8:59484817-59488468:+|nuORF	ENST00000523483.5_2_8:59484817-59488468:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.7813110351562	2	553.778231	1105.54191	0.72381	0.00040083	0.65336	0.00036181	1.3772	0.00076265	553.778969365903	113.89	0.4388	112.45	112.24	112.68	-1.4461					11	8	2	0	0	0	0.028476	1	10572	10572		37.028	10.336	1	40380			62002	13141	51128	51177	68072	68072					-0.006640902152867056
VQMWPWFL	8	Unmodified	_VQMWPWFL_					0	0	0		ENST00000523483.5_2_8:59484817-59488468:+|nuORF;ENST00000522843.5_1_8:59484817-59488468:+|nuORF	ENST00000523483.5_2_8:59484817-59488468:+|nuORF	ENST00000523483.5_2_8:59484817-59488468:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	553.778231	1105.54191	1.3911	0.00077035	-0.52473	-0.00029058	0.86634	0.00047976	553.7780387095801	112.84	0.44308	112.71	112.43	112.87	-0.12174	0.18914	0.00021086	NaN	20.482	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22202			62003	13141	51128	51177							-0.006640902152867056
VQMWPWFL	8	Unmodified	_VQMWPWFL_					0	0	0		ENST00000523483.5_2_8:59484817-59488468:+|nuORF;ENST00000522843.5_1_8:59484817-59488468:+|nuORF	ENST00000523483.5_2_8:59484817-59488468:+|nuORF	ENST00000523483.5_2_8:59484817-59488468:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	553.778231	1105.54191	0.47304	0.00026196	-1.6208	-0.00089755	-1.1477	-0.00063558	553.7773323213356	113.49	0.46519	112.42	112.2	112.66	-1.0753	-0.11002	-0.0010031	NaN	20.482	13	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37688			62004	13141	51128	51177							-0.006640902152867056
VQNDTLLQV	9	Unmodified	_VQNDTLLQV_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MSMS	OvCa9_classI_Rep2	2	515.2826538085938	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.39	1	104.95	104.45	105.45	-0.43642								0	0	0	0.027981	1	9785	9785		115.49	13.893	1				62005	8199	51129	51178	68073	68073					0.03709135235044414
VQNDTLLQV	9	Unmodified	_VQNDTLLQV_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MSMS	OvCa9_classI_Rep2	2	515.2828369140625	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.43	1	104.99	104.49	105.49	-0.43642								0	0	0	0.0026866	1	9789	9789		154.12	14.148	1				62006	8199	51129	51178	68074	68074					0.03709135235044414
VQNDTLLQV	9	Unmodified	_VQNDTLLQV_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MSMS	OvCa9_classI_Rep2	2	515.2822265625	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.48	1	105.04	104.54	105.54	-0.43642								0	0	0	0.0046572	1	9795	9795		148.99	19.304	1				62007	8199	51129	51178	68075	68075					0.03709135235044414
VQNDTLLQV	9	Unmodified	_VQNDTLLQV_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MSMS	OvCa9_classI_Rep2	2	515.282470703125	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.53	1	105.1	104.6	105.6	-0.43642								0	0	0	0.0096097	1	9802	9802		141.52	1.5499	1				62008	8199	51129	51178	68076	68076					0.03709135235044414
VQNDTLLQV	9	Unmodified	_VQNDTLLQV_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MSMS	OvCa9_classI_Rep2	2	515.2825927734375	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.58	1	105.15	104.65	105.65	-0.43642								0	0	0	0.0026866	1	9808	9808		154.12	24.436	1				62009	8199	51129	51178	68077	68077					0.03709135235044414
VQNDTLLQV	9	Unmodified	_VQNDTLLQV_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MSMS	OvCa9_classI_Rep2	2	515.28173828125	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.63	1	105.2	104.7	105.7	-0.43642								0	0	0	5.7752E-05	1	9814	9814		162.25	31.221	1				62010	8199	51129	51178	68078	68078					0.03709135235044414
VQNDTLLQV	9	Unmodified	_VQNDTLLQV_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MSMS	OvCa9_classI_Rep2	2	515.2814331054688	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.68	1	105.25	104.75	105.75	-0.43642								0	0	0	0.0046572	1	9820	9820		148.99	19.304	1				62011	8199	51129	51178	68079	68079					0.03709135235044414
VQNDTLLQV	9	Unmodified	_VQNDTLLQV_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MSMS	OvCa9_classI_Rep2	2	515.2819213867188	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.72	1	105.29	104.79	105.79	-0.43642								0	0	0	0.026392	1	9825	9825		120.87	16.122	1				62012	8199	51129	51178	68080	68080					0.03709135235044414
VQNDTLLQV	9	Unmodified	_VQNDTLLQV_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MSMS	OvCa9_classI_Rep2	2	515.282470703125	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.77	1	105.34	104.84	105.84	-0.43642								0	0	0	0.015318	1	9831	9831		136.27	19.365	1				62013	8199	51129	51178	68081	68081					0.03709135235044414
VQNDTLLQV	9	Unmodified	_VQNDTLLQV_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MSMS	OvCa9_classI_Rep2	2	515.2826538085938	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.82	1	105.39	104.89	105.89	-0.43642								0	0	0	0.022759	1	9837	9837		129.42	7.2453	1				62014	8199	51129	51178	68082	68082					0.03709135235044414
VQNDTLLQV	9	Unmodified	_VQNDTLLQV_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MSMS	OvCa9_classI_Rep2	2	515.2832641601562	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.87	1	105.44	104.94	105.94	-0.43642								0	0	0	0.015318	1	9843	9843		136.27	8.8064	1				62015	8199	51129	51178	68083	68083					0.03709135235044414
VQNDTLLQV	9	Unmodified	_VQNDTLLQV_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MSMS	OvCa9_classI_Rep2	2	515.2827758789062	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.92	1	105.49	104.99	105.99	-0.43642								0	0	0	0.0026866	1	9849	9849		154.12	19.308	1				62016	8199	51129	51178	68084	68084					0.03709135235044414
VQNDTLLQV	9	Unmodified	_VQNDTLLQV_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MSMS	OvCa9_classI_Rep2	2	515.2822265625	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	105.97	1	105.54	105.04	106.04	-0.43642								0	0	0	0.015318	1	9855	9855		136.27	12.188	1				62017	8199	51129	51178	68085	68085					0.03709135235044414
VQNDTLLQV	9	Unmodified	_VQNDTLLQV_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MSMS	OvCa9_classI_Rep2	2	515.282470703125	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.02	1	105.59	105.09	106.09	-0.43642								0	0	0	0.024444	1	9861	9861		127.46	14.05	1				62018	8199	51129	51178	68086	68086					0.03709135235044414
VQNDTLLQV	9	Unmodified	_VQNDTLLQV_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MSMS	OvCa9_classI_Rep2	2	515.2825317382812	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.07	1	105.64	105.14	106.14	-0.43642								0	0	0	0.00070601	1	9867	9867		159.28	37.1	1				62019	8199	51129	51178	68087	68087					0.03709135235044414
VQNDTLLQV	9	Unmodified	_VQNDTLLQV_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MSMS	OvCa9_classI_Rep2	2	515.2818603515625	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.12	1	105.69	105.19	106.19	-0.43642								0	0	0	0.015318	1	9873	9873		136.27	6.5855	1				62020	8199	51129	51178	68088	68088					0.03709135235044414
VQNDTLLQV	9	Unmodified	_VQNDTLLQV_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MSMS	OvCa9_classI_Rep2	2	515.2820434570312	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.18	1	105.74	105.24	106.24	-0.43642								0	0	0	0.0026866	1	9879	9879		154.12	19.308	1				62021	8199	51129	51178	68089	68089					0.03709135235044414
VQNDTLLQV	9	Unmodified	_VQNDTLLQV_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MSMS	OvCa9_classI_Rep2	2	515.2823486328125	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.23	1	105.8	105.3	106.3	-0.43642								0	0	0	0.025443	1	9886	9886		124.08	7.1765	1				62022	8199	51129	51178	68090	68090					0.03709135235044414
VQNDTLLQV	9	Unmodified	_VQNDTLLQV_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MSMS	OvCa9_classI_Rep2	2	515.2826538085938	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.38	1	106	105.5	106.5	-0.38039								0	0	0	0.028532	1	9904	9904		110.12	0	1				62023	8199	51129	51178	68091	68091					0.03709135235044414
VQNDTLLQV	9	Unmodified	_VQNDTLLQV_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MSMS	OvCa9_classI_Rep2	2	515.2830200195312	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.49	1	106.18	105.68	106.68	-0.30836								0	0	0	0.023636	1	9917	9917		98.582	13.421	1				62024	8199	51129	51178	68092	68092					0.03709135235044414
VQNDTLLQV	9	Unmodified	_VQNDTLLQV_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MSMS	OvCa9_classI_Rep2	2	515.2825927734375	2	515.282389	1028.55022	NaN	NaN	NaN	NaN	NaN	NaN	NaN	106.59	1	106.29	105.79	106.79	-0.30836								0	0	0	0.039743	1	9930	9930		82.241	5.4664	1				62025	8199	51129	51178	68093	68093					0.03709135235044414
VQNDTLLQV	9	Unmodified	_VQNDTLLQV_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MSMS	OvCa9_classI_Rep3	3	515.2833862304688	2	515.282389	1028.55022	0.94124	0.00048501	-1.1969	-0.00061674	-0.25566	-0.00013174	515.2818157223961	106.61	4.2629	105.34	104.28	108.54	-1.267					165	82	5	0	0	0	0.0078313	7	7528	7506;7511;7516;7522;7528;7534;7540		180.87	51.187	1	4317700			62026	8199	51129	51178	68094;68095;68096;68097;68098;68099;68100	68098					0.03709135235044414
VQNDTLLQV	9	Unmodified	_VQNDTLLQV_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.283447265625	2	515.282389	1028.55022	-1.8263	-0.00094104	1.5851	0.00081679	-0.24112	-0.00012424	515.2832089324711	107.23	3.0946	105.36	105.01	108.11	-1.8785					136	60	5	0	0	0	0.0070026	5	9776	9766;9776;9788;9800;9812		199.7	23.82	1	4662000			62027	8199	51129	51178	68101;68102;68103;68104;68105	68102					0.03709135235044414
VQNDTLLQV	9	Unmodified	_VQNDTLLQV_					0	0	0		ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	ENSG00000184897|ENST00000333762|H1-10	MULTI-MATCH	OvCa99_classI_Rep5	1		2	515.282389	1028.55022	0.55063	0.00028373	0.79028	0.00040721	1.3409	0.00069095	515.2829170397947	105.64	1.7523	105.64	105.22	106.97	0	0.19177	0.00029539	NaN	180.87	98	39	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26044000			62028	8199	51129	51178							0.03709135235044414
VQNGKVIGV	9	Unmodified	_VQNGKVIGV_					0	0	0		nc|ENSG00000057608|P50395-2|GDI2;ENSG00000057608|ENST00000380191|GDI2	nc|ENSG00000057608|P50395-2|GDI2	nc|ENSG00000057608|P50395-2|GDI2	MULTI-MSMS	OvCa99_classI_Rep5	1	457.2777404785156	2	457.276909	912.539266	-0.31261	-0.00014295	0.27557	0.00012601	-0.037043	-1.6939E-05	457.2769058230287	55.578	0.65285	55.578	55.358	56.011	0					44	15	5	0	0	0	0.019428	1	4554	4554		147.69	42.947	1	5240100			62029	1237	51130	51179	68106	68106					0.07949777651424483
VQNIIMARL	9	Unmodified	_VQNIIMARL_					0	0	0		ENSG00000174844|ENST00000495027|DNAH12;nc|ENSG00000174844|Q6ZR08|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	ENSG00000174844|ENST00000495027|DNAH12	MULTI-MSMS	OvCa99_classI_Rep5	1	529.3154907226562	2	529.312969	1056.61138	-0.30508	-0.00016148	3.7319	0.0019753	3.4268	0.0018138	529.315327513534	33.305	0.5933	33.305	33.087	33.681	0					19	11	2	0	0	0	0.29717	1	1528	1528		63.306	7.8021	1	509640			62030	7498	51131	51180	68107	68107					0.08534368733489828
VQNKKLGNT	9	Unmodified	_VQNKKLGNT_					0	0	0			REV__ENSG00000129534|ENST00000310806|MIS18BP1	REV__ENSG00000129534|ENST00000310806|MIS18BP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.2900390625	2	501.290548	1000.56654	1.9923	0.0009987	-2.262	-0.0011339	-0.26972	-0.00013521	501.28921225940996	136.36	2.694	134.82	133.46	136.15	-1.5437					126	54	3	0	0	0	0.5811	1	13161	13161		34.173	0	1	86011	+		62031	18902	51132	51181	68108	68108					0.06628261191792717
VQNLRKKH	8	Unmodified	_VQNLRKKH_					0	0	0		nc|ENSG00000197694|Q13813-3|SPTAN1;nc|ENSG00000197694|Q13813|SPTAN1;ENSG00000197694|ENST00000372739|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	nc|ENSG00000197694|Q13813-3|SPTAN1	MULTI-MSMS	OvCa9_classI_Rep2	2	511.81451416015625	2	511.814525	1021.6145	-1.0737	-0.00054956	0.80088	0.0004099	-0.27287	-0.00013966	511.81478887315143	50.018	2.3782	47.224	46.637	49.015	-2.794					105	47	4	0	0	0	0.7043	2	3186	3186;3204		42.474	8.9589	1	277830			62032	8736	51133	51182	68109;68110	68109					0.10455379902509776
VQNLVDLNSLN	11	Unmodified	_VQNLVDLNSLN_					0	0	0			REV__ENSG00000164715|ENST00000297293|LMTK2	REV__ENSG00000164715|ENST00000297293|LMTK2	MULTI-MSMS	OvCa99_classI_Rep5	1	614.8331909179688	2	614.830234	1227.64592	1.011	0.00062157	-1.6486	-0.0010136	-0.63766	-0.00039206	614.8291282608154	150.77	1.8206	150.77	150.34	152.16	0					104	36	5	0	0	0	0.23673	1	17636	17636		75.043	8.0814	1	1009500	+		62033	21014	51134	51183	68111	68111					0.041198633552767205
VQNMENPSI	9	Unmodified	_VQNMENPSI_					0	0	0			REV__L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|382|3|anti-sense	REV__L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|382|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	516.7742309570312	2	516.244949	1030.47534	-1.0658	-0.0005502	-2.6745	-0.0013807	-3.7403	-0.0019309	516.2433685459117	73.702	0.57874	70.306	69.979	70.557	-3.3961					27	11	3	0	0	0	0.027453	1	5696	5696		30.318	0	1	48292	+		62034	28537	51135	51184	68112	68112					-0.0386737056783204
VQNPEQEPL	9	Unmodified	_VQNPEQEPL_					0	0	0		nc|ENSG00000124429|Q8WVV4-3|POF1B;ENSG00000124429|ENST00000262753|POF1B;nc|ENSG00000124429|Q8WVV4-1|POF1B	nc|ENSG00000124429|Q8WVV4-3|POF1B	nc|ENSG00000124429|Q8WVV4-3|POF1B	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.26123046875	2	527.264196	1052.51384	-2.3112	-0.0012186	-3.4936	-0.0018421	-5.8048	-0.0030607	527.2622143752221	107.26	1.8139	105.39	104.75	106.56	-1.8785					78	35	4	0	0	0	0.35444	1	9804	9804		56.721	5.3856	1	619300			62035	3650	51136	51185	68113	68113					-0.01031741661677188
VQNPQAQTI	9	Unmodified	_VQNPQAQTI_					0	0	0		nc|ENSG00000185591|P08047-3|SP1;nc|ENSG00000185591|P08047-2|SP1;ENSG00000185591|ENST00000327443|SP1	nc|ENSG00000185591|P08047-3|SP1	nc|ENSG00000185591|P08047-3|SP1	MULTI-MSMS	OvCa99_classI_Rep5	1	499.76837158203125	2	499.766906	997.519259	-0.63556	-0.00031763	0.8793	0.00043945	0.24374	0.00012181	499.7671554692551	61.402	0.58415	61.402	61.2	61.784	0					33	13	4	0	0	0	0.064985	1	5411	5411		110.12	21.943	1	3086900			62036	8264	51137	51186	68114	68114					0.020399819208023473
VQNSIQYIN	9	Unmodified	_VQNSIQYIN_					0	0	0			REV__tr|A0A7D6ZZU4|A0A7D6ZZU4_9CLOTProtein-argininekinaseOS=ClostridiumintestinaleOX=36845GN=mcsBPE=3SV=1	REV__tr|A0A7D6ZZU4|A0A7D6ZZU4_9CLOTProtein-argininekinaseOS=ClostridiumintestinaleOX=36845GN=mcsBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.8258056640625	2	539.780013	1077.54547	-0.59154	-0.0003193	0.61403	0.00033144	0.02249	1.2139E-05	539.780220617332	92.723	0.36658	90.761	90.423	90.79	-1.9617					15	7	3	0	0	0	0.027433	1	5897	5897		34.173	0	1	243080	+		62037	32423	51138	51187	68115	68115					0.009802510922781948
VQNSTHLVD	9	Unmodified	_VQNSTHLVD_					0	0	0		ENSG00000132801|ENST00000255152|ZSWIM3	ENSG00000132801|ENST00000255152|ZSWIM3	ENSG00000132801|ENST00000255152|ZSWIM3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3032531738281	2	506.756538	1011.49852	-1.2293	-0.00062294	0.92839	0.00047047	-0.30088	-0.00015247	506.75647212015787	92.643	0.95567	90.136	89.857	90.813	-2.5072					25	18	2	0	0	0	0.027462	1	8095	8095		23.042	0	1	54314			62038	4175	51139	51188	68116	68116					-0.006766084588434751
VQPDQAHMALI	11	Unmodified	_VQPDQAHMALI_					0	0	0			REV__ENST00000508918.5_1_4:16504706-16675844:-|nuORF	REV__ENST00000508918.5_1_4:16504706-16675844:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	611.2667846679688	2	611.816073	1221.61759	2.6733	0.0016356	-4.3141	-0.0026395	-1.6408	-0.0010039	611.8132681238216	86.744	0.41977	86.744	86.553	86.972	0					16	9	2	0	0	0	0.025746	1	9160	9160		19.104	0	1	236930	+		62039	21480	51140	51189	68117	68117					0.015648421743435392
VQPDRVFPPL	10	Unmodified	_VQPDRVFPPL_					0	0	0		nc|ENSG00000089820|P98171-2|ARHGAP4;TMX2-ARHGAP4|1|fusion;ENST00000404127.6_1_X:153173185-153186849:-|nuORF;ENSG00000089820|ENST00000350060|ARHGAP4;ENST00000461739.1_1_X:153175506-153175857:-|nuORF;ENST00000470209.5_1_X:153173185-153178999:-|nuORF	nc|ENSG00000089820|P98171-2|ARHGAP4	nc|ENSG00000089820|P98171-2|ARHGAP4	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.8099365234375	2	584.329673	1166.64479	2.3398	0.0013672	2.0702	0.0012097	4.41	0.0025769	584.3307507933756	102.38	0.9833	102.38	101.82	102.81	0					42	22	3	0	0	0	0.026994	1	11461	11461		32.812	7.2384	1	361900			62040	14914	51141	51190	68118	68118					0.06813693777030494
VQPGHACP	8	Unmodified	_VQPGHACP_					0	0	0		ENST00000573956.1_1_17:79857674-79857938:+|nuORF	ENST00000573956.1_1_17:79857674-79857938:+|nuORF	ENST00000573956.1_1_17:79857674-79857938:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.7071533203125	2	404.692155	807.369758	1.1859	0.00047992	-4.44	-0.0017968	-3.2541	-0.0013169	404.68953391214467	43.149	0.25675	43.149	42.97	43.227	0					9	5	2	0	0	0	0.028476	1	2807	2807		37.028	3.5355	1	30953			62041	13925	51142	51191	68119	68119					-0.041632419028019285
VQPGLPLT	8	Unmodified	_VQPGLPLT_					0	0	0			REV__ENST00000356798.10_1_16:30484081-30484159:+|nuORF	REV__ENST00000356798.10_1_16:30484081-30484159:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.7041931152344	2	412.747453	823.480354	0.96691	0.00039909	0.6444	0.00026597	1.6113	0.00066506	412.7475222155792	31.584	0.49643	31.584	31.41	31.906	0					20	9	3	0	0	0	0.028476	1	1328	1328		37.159	5.2042	1	288420	+		62042	24771	51143	51192	68120	68120					0.06155301357091503
VQPILSSVPT	10	Unmodified	_VQPILSSVPT_					0	0	0		nc|ENSG00000147548|Q9BZ95-3|NSD3;nc|ENSG00000147548|Q9BZ95-4|NSD3;nc|ENSG00000147548|Q9BZ95-2|NSD3;nc|ENSG00000147548|Q9BZ95-5|NSD3;ENSG00000147548|ENST00000317025|NSD3;ENST00000587110.1_1_17:41796950-41797316:-|nuORF	nc|ENSG00000147548|Q9BZ95-3|NSD3	nc|ENSG00000147548|Q9BZ95-3|NSD3	MULTI-SECPEP	OvCa9_classI_Rep3	3	521.3358764648438	2	520.802957	1039.59136	0.5364	0.00027936	4.0683	0.0021188	4.6047	0.0023981	520.8050182873172	70.736	2.1022	68.017	67.699	69.801	-2.7196					68	41	2	0	0	0	0.027221	1	3338	3338		19.104	2.6304	1	316830			62043	5363	51144	51193	68121	68121					0.07314896274510829
VQPLLSKQP	9	Unmodified	_VQPLLSKQP_					0	0	0		ENSG00000125898|ENST00000381941|FAM110A	ENSG00000125898|ENST00000381941|FAM110A	ENSG00000125898|ENST00000381941|FAM110A	MULTI-MSMS	OvCa99_classI_Rep5	1	505.3087463378906	2	505.305667	1008.59678	2.3737	0.0011994	-0.49663	-0.00025095	1.877	0.00094848	505.3053143814638	113.22	0.68619	113.22	112.92	113.61	0					36	16	3	0	0	0	0.24951	1	12929	12929		68.787	2.3575	1	454830			62044	3751	51145	51194	68122	68122					0.09282619856992369
VQPLNAMLL	9	Unmodified	_VQPLNAMLL_					0	0	0			REV__nc|ENSG00000100099|Q9NQG7-4|HPS4	REV__nc|ENSG00000100099|Q9NQG7-4|HPS4	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.82269287109375	2	499.788795	997.563038	-0.46834	-0.00023407	-0.082064	-4.1015E-05	-0.5504	-0.00027508	499.78877889193774	50.97	0.78691	50.97	50.421	51.207	0					30	17	2	0	0	0	0.027462	1	3880	3880		40.573	24.099	1	947510	+		62045	17365	51146	51195	68123	68123					0.06415875093591694
VQPLNAMLL	9	Unmodified	_VQPLNAMLL_					0	0	0			REV__nc|ENSG00000100099|Q9NQG7-4|HPS4	REV__nc|ENSG00000100099|Q9NQG7-4|HPS4	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	499.788795	997.563038	-1.2533	-0.00062637	5.2963	0.002647	4.043	0.0020207	499.7913552828987	54.265	1.1785	51.017	50.466	51.644	-3.2474	0.023687	0.0018243	NaN	24.203	28	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37562	+		62046	17365	51146	51195							0.06415875093591694
VQPLRTEPN	9	Unmodified	_VQPLRTEPN_					0	0	0			REV__ENST00000308742.8_1_12:38712183-38713996:+|nuORF	REV__ENST00000308742.8_1_12:38712183-38713996:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.341796875	2	527.288005	1052.56146	-1.4321	-0.00075512	0.85483	0.00045074	-0.57726	-0.00030438	527.7900772959159	87.322	0.90381	84.695	84.201	85.105	-2.6269					43	17	4	0	0	0	0.027461	1	7442	7442		49.442	1.7842	1	76513	+		62047	24318	51147	51196	68124	68124					0.0372795732916984
VQPLVLLRHH	10	Unmodified	_VQPLVLLRHH_					0	0	0		ENSG00000127511|ENST00000248054|SIN3B;nc|ENSG00000127511|O75182|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	ENSG00000127511|ENST00000248054|SIN3B	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3692626953125	2	606.372207	1210.72986	-3.14	-0.001904	-1.1627	-0.00070505	-4.3027	-0.0026091	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.85907	1	15027	15027		11.511	1.2458	1	257720			62048	3836	51148	51197	68125	68125					0.13292484033490837
VQPPSLHVLV	10	Unmodified	_VQPPSLHVLV_					0	0	0		ENST00000498115.1_1_1:228334565-228335341:+|nuORF	ENST00000498115.1_1_1:228334565-228335341:+|nuORF	ENST00000498115.1_1_1:228334565-228335341:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	544.826416015625	2	544.826766	1087.63898	-4.363	-0.0023771	0.3268	0.00017805	-4.0362	-0.002199	544.82700234604	154.97	0.71278	154.74	154.48	155.19	-0.22696					46	16	4	0	0	0	0.7759	1	15820	15820		21.96	4.5949	1	60082			62049	12820	51149	51198	68126	68126					0.09866595265361866
VQPRNWLLFA	10	Unmodified	_VQPRNWLLFA_					0	0	0		ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	ENSG00000060762|ENST00000360961|MPC1	MULTI-MSMS	OvCa99_classI_Rep5	1	622.3541259765625	2	622.35094	1242.68733	1.4981	0.00093234	-0.01466	-9.1237E-06	1.4834	0.00092321	622.3509591408077	125.86	0.88245	125.86	125.39	126.28	0					47	19	3	0	0	0	0.52321	1	14552	14552		51.335	17.414	1	594560			62050	1267	51150	51199	68127	68127					0.07569088905279386
VQPSKYHFL	9	Unmodified	_VQPSKYHFL_					0	0	0		ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	MULTI-MSMS	OvCa99_classI_Rep5	1	559.8052978515625	2	559.803291	1117.59203	0.060741	3.4003E-05	-0.94511	-0.00052908	-0.88437	-0.00049507	559.8027489395263	67.788	2.0244	67.788	67.489	69.513	0					131	49	6	0	0	0	0.27001	1	6376	6376		66.429	2.222	1	32943000			62051	7675	51151	51200	68128	68128					0.03793735714225477
VQPSKYHFL	9	Unmodified	_VQPSKYHFL_					0	0	0		ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	ENSG00000177383|ENST00000317897|MAGEF1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	559.803291	1117.59203	0.2626	0.000147	-6.447	-0.0036091	-6.1844	-0.0034621	560.3012136154741	71.048	0.19156	67.592	67.486	67.677	-3.4563	-0.098002	-0.0059391	NaN	66.429	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13763			62052	7675	51151	51200							0.03793735714225477
VQPSLFYHL	9	Unmodified	_VQPSLFYHL_					0	0	0		nc|ENSG00000142733|O95382-3|MAP3K6;ENSG00000142733|ENST00000357582|MAP3K6;MAP3K6|p.P340Lfs*6|1|0.07|ENSG00000142733|chr1:27362974-27362975|-/A|frameshift_variant	nc|ENSG00000142733|O95382-3|MAP3K6	nc|ENSG00000142733|O95382-3|MAP3K6	MULTI-MSMS	OvCa99_classI_Rep5	1	552.3003540039062	2	552.297842	1102.58113	1.1911	0.00065784	0.69918	0.00038615	1.8903	0.001044	552.2981237861362	111.54	1.1861	111.54	111.16	112.34	0					65	25	4	0	0	0	0.33652	2	12671	12671;12695		58.782	7.4465	1	2008500			62053	4994	51152	51201	68129;68130	68129					0.03394333339952027
VQPSVVPVVR	10	Unmodified	_VQPSVVPVVR_					0	0	0			REV__ENST00000468435.6_1_9:6413243-6413303:+|nuORF	REV__ENST00000468435.6_1_9:6413243-6413303:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3316040039062	2	540.332216	1078.64988	0.34656	0.00018726	-4.1131	-0.0022225	-3.7666	-0.0020352	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.69073	1	13643	13643		31.53	3.6476	1	342200	+		62054	26224	51153	51202	68131	68131					0.11369997639667417
VQPWLSPEL	9	Unmodified	_VQPWLSPEL_					0	0	0		nc|ENSG00000082146|Q9C0K7-3|STRADB;nc|ENSG00000082146|Q9C0K7-2|STRADB;ENSG00000082146|ENST00000194530|STRADB;ENST00000468123.1_1_2:202340421-202342983:+|nuORF;ENST00000478954.1_1_7:150210046-150210850:-|nuORF	nc|ENSG00000082146|Q9C0K7-3|STRADB	nc|ENSG00000082146|Q9C0K7-3|STRADB	MULTI-MSMS	OvCa9_classI_Rep3	3	534.7908325195312	2	534.78985	1067.56515	3.0352	0.0016232	0.018347	9.812E-06	3.0536	0.001633	534.7896759823677	56.343	2.6096	53.193	52.451	55.06	-3.1504					179	83	3	0	0	0	0.68424	1	1574	1574		21.96	0.25755	1	87189			62055	1670	51154	51203	68132	68132					0.034066271030496864
VQQAVLQSV	9	Unmodified	_VQQAVLQSV_					0	0	0			REV__nc|ENSG00000015153|Q8IY57-3|YAF2	REV__nc|ENSG00000015153|Q8IY57-3|YAF2	MULTI-MSMS	OvCa99_classI_Rep5	1	486.2815246582031	2	486.279649	970.544745	-0.57568	-0.00027994	0.44154	0.00021471	-0.13414	-6.5229E-05	486.2798125909863	51.707	0.70942	51.707	51.504	52.214	0					39	16	4	0	0	0	0.33652	1	4015	4015		58.782	0	1	1218200	+		62056	16515	51155	51204	68133	68133					0.058294564432458174
VQQDAFPLHT	10	Unmodified	_VQQDAFPLHT_					0	0	0			REV__tr|A0A553SR98|A0A553SR98_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00710PE=3SV=1	REV__tr|A0A553SR98|A0A553SR98_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00710PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2882690429688	2	578.293288	1154.57202	-7.6021	-0.0043963	1.2846	0.00074285	-6.3176	-0.0036534	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.80581	1	13406	13406		18.262	0	1	1429200	+		62057	30708	51156	51205	68134	68134					0.0009193998362206912
VQQILQTKE	9	Unmodified	_VQQILQTKE_					0	0	0			REV__ENSG00000204103|ENST00000373313|MAFB	REV__ENSG00000204103|ENST00000373313|MAFB	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.796630859375	2	543.811313	1085.60807	2.1388	0.0011631	-1.1171	-0.0006075	1.0216	0.00055558	543.8106821939058	107.44	0.50002	107.44	107.19	107.69	0					24	11	4	0	0	0	0.027462	1	12118	12118		34.173	0	1	1235700	+		62058	23125	51157	51206	68135	68135					0.06869397160448898
VQQLDNLLN	9	Unmodified	_VQQLDNLLN_					0	0	0		ENSG00000139144|ENST00000538779|PIK3C2G;nc|ENSG00000139144|O75747-2|PIK3C2G	ENSG00000139144|ENST00000538779|PIK3C2G	ENSG00000139144|ENST00000538779|PIK3C2G	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.2398681640625	2	528.787838	1055.56112	-1.2699	-0.00067153	1.3022	0.00068859	0.032257	1.7057E-05	528.7884817431255	103.74	0.36782	101.62	101.48	101.85	-2.1192					9	6	2	0	0	0	0.027447	1	9359	9359		47.657	0	1	11065			62059	4745	51158	51207	68136	68136					0.03556537609347288
VQQLDNLLN	9	Unmodified	_VQQLDNLLN_					0	0	0		ENSG00000139144|ENST00000538779|PIK3C2G;nc|ENSG00000139144|O75747-2|PIK3C2G	ENSG00000139144|ENST00000538779|PIK3C2G	ENSG00000139144|ENST00000538779|PIK3C2G	MULTI-MATCH	OvCa9_classI_Rep3	3		2	528.787838	1055.56112	-0.4064	-0.0002149	1.1324	0.00059882	0.72605	0.00038392	528.7876208306084	103.13	0.26241	101.63	101.49	101.75	-1.4996	0.0045178	-0.00012573	NaN	47.657	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10537			62060	4745	51158	51207							0.03556537609347288
VQQLVDPN	8	Unmodified	_VQQLVDPN_					0	0	0			REV__ENST00000389118.8_1_5:170395310-170711609:+|nuORF	REV__ENST00000389118.8_1_5:170395310-170711609:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	455.7893981933594	2	456.742899	911.471246	0.94453	0.00043141	-2.648	-0.0012094	-1.7035	-0.00077804	456.7419699172284	106.68	0.4955	106.37	106.18	106.67	-0.30836					13	9	2	0	0	0	0.028476	1	9937	9937		30.504	0	1	4791.8	+		62061	25225	51159	51208	68137	68137					0.011969080007588673
VQQPFLFVL	9	Unmodified	_VQQPFLFVL_					0	0	0		ENSG00000149131|ENST00000278407|SERPING1;nc|ENSG00000149131|P05155-3|SERPING1;nc|ENSG00000149131|P05155-2|SERPING1;ENST00000528996.1_1_11:57374185-57382051:+|nuORF	ENSG00000149131|ENST00000278407|SERPING1	ENSG00000149131|ENST00000278407|SERPING1	MULTI-MSMS	OvCa9_classI_Rep2	2	545.8162841796875	2	545.81841	1089.62227	-1.197	-0.00065337	-2.7873	-0.0015214	-3.9843	-0.0021747	545.8167800423154	120.61	1.2338	120.42	120.06	121.3	-0.19718					56	24	3	0	0	0	0.44294	1	11633	11633		47.916	0	1	190390			62062	5443	51160	51209	68138	68138					0.08104094379427806
VQQPLLPPD	9	Unmodified	_VQQPLLPPD_					0	0	0			REV__ENST00000465591.1_1_20:62368003-62369414:+|nuORF	REV__ENST00000465591.1_1_20:62368003-62369414:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	503.78271484375	2	503.782025	1005.5495	-2.1068	-0.0010614	1.823	0.00091842	-0.28372	-0.00014293	503.78287469818247	142.52	0.93732	142.29	141.97	142.9	-0.22697					31	18	3	0	0	0	0.61208	1	14316	14316		30.504	5.0535	1	38508	+		62063	26171	51161	51210	68139	68139					0.04694340585979262
VQQQQQGP	8	Unmodified	_VQQQQQGP_					0	0	0			REV__ENSG00000167548|ENST00000301067|KMT2D	REV__ENSG00000167548|ENST00000301067|KMT2D	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.74517822265625	2	456.730323	911.446094	1.4741	0.00067328	1.0177	0.00046481	2.4918	0.0011381	456.7306226521037	105.9	0.56914	105.9	105.53	106.1	0					20	12	2	0	0	0	0.028476	1	11887	11887		42.474	6.8562	1	262730	+		62064	21287	51162	51211	68140	68140					-0.013171468018072119
VQQQSHLPL	9	Unmodified	_VQQQSHLPL_					0	0	0			REV__ENSG00000010818|ENST00000367603|HIVEP2	REV__ENSG00000010818|ENST00000367603|HIVEP2	MULTI-MSMS	OvCa99_classI_Rep5	1	525.2930908203125	2	525.290548	1048.56654	1.0357	0.00054403	2.5311	0.0013295	3.5667	0.0018736	525.291843379011	149.59	1.0335	149.59	149.31	150.34	0					37	20	3	0	0	0	0.50149	1	17522	17522		42.396	3.59	1	88429	+		62065	16482	51163	51212	68141	68141					0.044202611917853574
VQQWLGCGGAR	11	Unmodified	_VQQWLGCGGAR_					0	0	0			REV__ENST00000527623.1_1_19:46891683-46893600:+|nuORF	REV__ENST00000527623.1_1_19:46891683-46893600:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.3107299804688	2	587.792932	1173.57131	2.3634	0.0013892	2.3863	0.0014026	4.7497	0.0027918	587.794389414888	75.983	0.84174	75.983	75.482	76.324	0					36	20	2	0	0	0	0.025457	1	7520	7520		29.17	8.3329	1	717980	+		62066	27156	51164	51213	68142	68142					-0.008531779370741788
VQQWQGVRGLT	11	Unmodified	_VQQWQGVRGLT_					0	0	0		Tigger1_dup9834|chr14:19106484-19106883:-|1.64118294126502|0.2064126540684672|2.99|422.0|7|2|sense	Tigger1_dup9834|chr14:19106484-19106883:-|1.64118294126502|0.2064126540684672|2.99|422.0|7|2|sense	Tigger1_dup9834|chr14:19106484-19106883:-|1.64118294126502|0.2064126540684672|2.99|422.0|7|2|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	423.93597412109375	3	424.566683	1270.67822	-0.67084	-0.00028482	-0.58056	-0.00024649	-1.2514	-0.00053131	424.9002179225047	70.247	0.31911	70.247	70.089	70.408	0					11	7	2	0	0	0	0.025677	1	6737	6737		25.068	0	1	151480			62067	32956	51165	51214	68143	68143					0.053706955489587926
VQRASRLVLS	10	Unmodified	_VQRASRLVLS_					0	0	0			REV__ENSG00000162783|ENST00000367577|IER5	REV__ENSG00000162783|ENST00000367577|IER5	MULTI-SECPEP	OvCa9_classI_Rep3	3	564.32568359375	2	564.846022	1127.67749	-0.82075	-0.0004636	-2.8332	-0.0016003	-3.654	-0.0020639	564.8467826201419	102.28	0.31091	100.76	100.58	100.89	-1.5211					8	5	2	0	0	0	0.027149	1	7043	7043		60.118	0	1	11865	+		62068	20780	51166	51215	68144	68144					0.11875900899894987
VQRDADIGV	9	Unmodified	_VQRDADIGV_					0	0	0		ENST00000577789.5_1_17:27207581-27224656:-|nuORF;ENSG00000132589|ENST00000394908|FLOT2	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	ENST00000577789.5_1_17:27207581-27224656:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	486.7602844238281	2	486.759081	971.503609	-0.42304	-0.00020592	0.33087	0.00016105	-0.092171	-4.4865E-05	486.7591917730426	56.03	1.2402	56.03	55.764	57.004	0					68	29	5	0	0	0	0.2077	1	4608	4608		75.043	0.78827	1	7681000			62069	4149	51167	51216	68145	68145					0.016716954037633514
VQRGPRWN	8	Unmodified	_VQRGPRWN_					0	0	0		ENAM|p.E968Afs*96|1|0.07|ENSG00000132464|chr4:70644328-70644329|-/CC|frameshift_variant;ENSG00000132464|ENST00000396073|ENAM	ENAM|p.E968Afs*96|1|0.07|ENSG00000132464|chr4:70644328-70644329|-/CC|frameshift_variant	ENAM|p.E968Afs*96|1|0.07|ENSG00000132464|chr4:70644328-70644329|-/CC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.32452392578125	2	506.7754	1011.53625	-0.33288	-0.00016869	0.66304	0.00033601	0.33017	0.00016732	506.77586877488784	64.469	0.5812	64.469	64.253	64.834	0					22	13	2	0	0	0	0.028476	1	5906	5906		25.45	2.4077	1	300980			62070	795	51168	51217	68146	68146					0.030939473172679754
VQRKNDNR	8	Unmodified	_VQRKNDNR_					0	0	0			REV__nc|ENSG00000257103|Q8ND56-3|LSM14A	REV__nc|ENSG00000257103|Q8ND56-3|LSM14A	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.3101196289062	2	515.281046	1028.54754	-0.8909	-0.00045906	0.68037	0.00035058	-0.21053	-0.00010848	515.281365914091	25.906	0.29843	25.906	25.793	26.092	0					6	5	2	0	0	0	0.028476	1	636	636		24.203	0	1	24163	+		62071	23544	51169	51218	68147	68147					0.03440724620736546
VQRLEKTLQ	9	Unmodified	_VQRLEKTLQ_					0	0	0			REV__ENSG00000123094|ENST00000689635|RASSF8	REV__ENSG00000123094|ENST00000689635|RASSF8	MULTI-SECPEP	OvCa9_classI_Rep2	2	558.3502197265625	2	557.83258	1113.65061	0.94839	0.00052904	-4.4309	-0.0024717	-3.4825	-0.0019426	557.8300534675792	81.035	1.9494	79.387	79.064	81.013	-1.6485					71	37	3	0	0	0	0.027453	1	7033	7033		54.776	0	1	275060	+		62072	18623	51170	51219	68148	68148					0.09832792288693781
VQRLEPVI	8	Unmodified	_VQRLEPVI_					0	0	0		nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3;ENST00000487989.1_1_10:6264793-6268376:+|nuORF;nc|ENSG00000158571|P16118-2|PFKFB1;ENSG00000158571|ENST00000375006|PFKFB1;nc|ENSG00000123836|O60825-2|PFKFB2;ENSG00000123836|ENST00000367080|PFKFB2;ENST00000411990.6_1_1:207235951-207252361:+|nuORF;nc|ENSG00000114268|Q16877-2|PFKFB4;ENSG00000114268|ENST00000232375|PFKFB4;nc|ENSG00000114268|Q16877-3|PFKFB4;ENST00000417753.5_1_3:48557182-48594149:-|nuORF	nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000123836|O60825-2|PFKFB2;nc|ENSG00000114268|Q16877-2|PFKFB4	nc|ENSG00000170525|Q16875-3|PFKFB3	MULTI-MSMS	OvCa99_classI_Rep5	1	477.2940979003906	2	477.292559	952.570566	0.64909	0.00030981	0.96349	0.00045986	1.6126	0.00076967	477.2931302146515	81.276	0.82082	81.276	80.993	81.814	0					68	19	5	0	0	0	0.59904	1	8357	8357		64.207	3.9133	1	5512700			62073	7114;14970;3614	51171	51220	68149	68149					0.09238350685518526
VQRLEPVI	8	Unmodified	_VQRLEPVI_					0	0	0		nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3;ENST00000487989.1_1_10:6264793-6268376:+|nuORF;nc|ENSG00000158571|P16118-2|PFKFB1;ENSG00000158571|ENST00000375006|PFKFB1;nc|ENSG00000123836|O60825-2|PFKFB2;ENSG00000123836|ENST00000367080|PFKFB2;ENST00000411990.6_1_1:207235951-207252361:+|nuORF;nc|ENSG00000114268|Q16877-2|PFKFB4;ENSG00000114268|ENST00000232375|PFKFB4;nc|ENSG00000114268|Q16877-3|PFKFB4;ENST00000417753.5_1_3:48557182-48594149:-|nuORF	nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000123836|O60825-2|PFKFB2;nc|ENSG00000114268|Q16877-2|PFKFB4	nc|ENSG00000170525|Q16875-3|PFKFB3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	477.292559	952.570566	-0.10986	-5.2435E-05	0.57169	0.00027286	0.46183	0.00022043	477.29252481841763	83.051	1.3702	81.452	80.75	82.12	-1.5988	0.092517	0.00019226	NaN	64.207	32	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31891			62074	7114;14970;3614	51171	51220							0.09238350685518526
VQRLEPVI	8	Unmodified	_VQRLEPVI_					0	0	0		nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3;ENST00000487989.1_1_10:6264793-6268376:+|nuORF;nc|ENSG00000158571|P16118-2|PFKFB1;ENSG00000158571|ENST00000375006|PFKFB1;nc|ENSG00000123836|O60825-2|PFKFB2;ENSG00000123836|ENST00000367080|PFKFB2;ENST00000411990.6_1_1:207235951-207252361:+|nuORF;nc|ENSG00000114268|Q16877-2|PFKFB4;ENSG00000114268|ENST00000232375|PFKFB4;nc|ENSG00000114268|Q16877-3|PFKFB4;ENST00000417753.5_1_3:48557182-48594149:-|nuORF	nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000123836|O60825-2|PFKFB2;nc|ENSG00000114268|Q16877-2|PFKFB4	nc|ENSG00000170525|Q16875-3|PFKFB3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	477.292559	952.570566	-0.3336	-0.00015923	0.23709	0.00011316	-0.096511	-4.6064E-05	477.2924562986782	83.569	1.111	81.308	80.816	81.927	-2.261	-0.051128	-0.00012715	NaN	64.207	30	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54639			62075	7114;14970;3614	51171	51220							0.09238350685518526
VQRLEPVI	8	Unmodified	_VQRLEPVI_					0	0	0		nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3;ENST00000487989.1_1_10:6264793-6268376:+|nuORF;nc|ENSG00000158571|P16118-2|PFKFB1;ENSG00000158571|ENST00000375006|PFKFB1;nc|ENSG00000123836|O60825-2|PFKFB2;ENSG00000123836|ENST00000367080|PFKFB2;ENST00000411990.6_1_1:207235951-207252361:+|nuORF;nc|ENSG00000114268|Q16877-2|PFKFB4;ENSG00000114268|ENST00000232375|PFKFB4;nc|ENSG00000114268|Q16877-3|PFKFB4;ENST00000417753.5_1_3:48557182-48594149:-|nuORF	nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000123836|O60825-2|PFKFB2;nc|ENSG00000114268|Q16877-2|PFKFB4	nc|ENSG00000170525|Q16875-3|PFKFB3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	477.292559	952.570566	0.78234	0.00037341	-0.30078	-0.00014356	0.48156	0.00022984	477.292145096986	84.065	0.70836	81.402	81.022	81.73	-2.6629	0.042316	-0.0006406	NaN	64.207	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47100			62076	7114;14970;3614	51171	51220							0.09238350685518526
VQRNKQHEVE	10	Unmodified	_VQRNKQHEVE_					0	0	0		ENST00000480906.5_1_3:195057651-195163594:-|nuORF;ACAP2|p.G564Afs*7|1|0.05|ENSG00000114331|chr3:195294793-195294794|-/G|frameshift_variant;ENSG00000114331|ENST00000326793|ACAP2	ENST00000480906.5_1_3:195057651-195163594:-|nuORF	ENST00000480906.5_1_3:195057651-195163594:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	421.9194030761719	3	422.889825	1265.64765	-0.31349	-0.00013257	-0.048582	-2.0545E-05	-0.36207	-0.00015312	422.8898245706335	37.919	0.7707	37.919	37.761	38.531	0					21	16	2	0	0	0	0.026891	1	2114	2114		8.7993	0	1	96904			62077	17	51172	51221	68150	68150					0.02544917163891114
VQRWQVSK	8	Unmodified	_VQRWQVSK_					0	0	0		ENST00000372025.4_1_1:46153863-46156732:+|nuORF	ENST00000372025.4_1_1:46153863-46156732:+|nuORF	ENST00000372025.4_1_1:46153863-46156732:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.8037719726562	2	515.793258	1029.57196	-1.2957	-0.00066829	0.31066	0.00016024	-0.985	-0.00050806	515.7932751644313	95.521	1.5681	93.052	92.711	94.279	-2.4685					59	30	3	0	0	0	0.028476	1	8404	8404		24.203	0	1	79805			62078	10972	51173	51222	68151	68151					0.05835984774262215
VQSEEKLVI	9	Unmodified	_VQSEEKLVI_					0	0	0		ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	ENSG00000131558|ENST00000253861|EXOC4	MULTI-MSMS	OvCa99_classI_Rep5	1	522.8021240234375	2	522.800414	1043.58628	2.0332	0.0010629	0.04104	2.1456E-05	2.0742	0.0010844	522.800420559171	75.936	1.4055	75.936	75.639	77.044	0					98	34	5	0	0	0	0.022645	2	7577	7577;7607		143.89	35.799	1	15894000			62079	4075	51174	51223	68152;68153	68152					0.06622592411895312
VQSIAGERHS	10	Unmodified	_VQSIAGERHS_					0	0	0			REV__ENSG00000110756|ENST00000349215|HPS5	REV__ENSG00000110756|ENST00000349215|HPS5	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.3045654296875	2	542.280712	1082.54687	1.5562	0.00084388	-1.6705	-0.0009059	-0.11436	-6.2016E-05	542.279655967321	105.86	0.35029	105.86	105.79	106.14	0					12	7	2	0	0	0	0.026891	1	11899	11899		8.2351	0	1	1430000	+		62080	18001	51175	51224	68154	68154					0.00889885181027239
VQSLTVRCWPP	11	Unmodified	_VQSLTVRCWPP_					0	0	0			REV__ENST00000471540.5_1_21:46684211-46684493:-|nuORF	REV__ENST00000471540.5_1_21:46684211-46684493:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	643.286376953125	2	643.339715	1284.66488	1.8118	0.0011656	-3.6858	-0.0023712	-1.874	-0.0012056	643.337544665076	148.42	0.59192	148.42	148.23	148.82	0					23	11	3	0	0	0	0.025487	1	17377	17377		31.634	0	1	89791	+		62081	26287	51176	51225	68155	68155					0.03393121445333236
VQSLVPVK	8	Unmodified	_VQSLVPVK_					0	0	0		nc|ENSG00000167210|Q8IVV2-3|LOXHD1;nc|ENSG00000167210|Q8IVV2|LOXHD1;ENSG00000167210|ENST00000642948|LOXHD1;nc|ENSG00000167210|Q8IVV2-4|LOXHD1;nc|ENSG00000167210|Q8IVV2-5|LOXHD1	nc|ENSG00000167210|Q8IVV2-3|LOXHD1	nc|ENSG00000167210|Q8IVV2-3|LOXHD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.2544250488281	2	435.276378	868.538203	0.037392	1.6276E-05	-0.02836	-1.2345E-05	0.009032	3.9314E-06	435.27621289316187	66.458	1.3772	62.967	62.66	64.037	-3.4902					52	27	3	0	0	0	0.028476	1	4931	4931		16.473	4.2663	1	159920			62082	6773	51177	51226	68156	68156					0.09867563282523406
VQSQTQPRI	9	Unmodified	_VQSQTQPRI_					0	0	0		nc|ENSG00000148337|Q9ULV3-5|CIZ1;nc|ENSG00000148337|Q9ULV3-3|CIZ1;nc|ENSG00000148337|Q9ULV3-4|CIZ1;nc|ENSG00000148337|Q9ULV3-2|CIZ1;ENSG00000148337|ENST00000372938|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	nc|ENSG00000148337|Q9ULV3-5|CIZ1	MULTI-MSMS	OvCa99_classI_Rep5	1	528.7930908203125	2	528.793455	1055.57236	-0.19114	-0.00010107	0.82031	0.00043378	0.62918	0.00033271	528.7938044991954	47.037	0.48492	47.037	46.809	47.294	0					25	10	4	0	0	0	0.3249	1	3366	3366		60.118	3.6845	1	931600			62083	5400	51178	51227	68157	68157					0.046793597034593404
VQSYTNSII	9	Unmodified	_VQSYTNSII_					0	0	0			REV__nc|ENSG00000196335|Q9BXU1-3|STK31	REV__nc|ENSG00000196335|Q9BXU1-3|STK31	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.312255859375	2	512.769114	1023.52368	-0.23192	-0.00011892	1.3036	0.00066847	1.0717	0.00054955	512.7693345865272	104.88	0.6131	104.88	104.7	105.31	0					30	13	4	0	0	0	0.027411	1	11808	11808		54.776	1.8396	1	538000	+		62084	22811	51179	51228	68158	68158					0.01285446343717922
VQTAELTKV	9	Unmodified	_VQTAELTKV_					0	0	0		ENSG00000130755|ENST00000597595|GMFG;ENST00000601731.1_1_19:39819119-39826633:-|nuORF;ENSG00000197045|ENST00000358056|GMFB	ENSG00000130755|ENST00000597595|GMFG	ENSG00000130755|ENST00000597595|GMFG	MULTI-MSMS	OvCa99_classI_Rep5	1	494.7879638671875	2	494.787307	987.560061	-0.31886	-0.00015777	-0.36646	-0.00018132	-0.68532	-0.00033909	494.78705350327994	104.9	0.43609	104.9	104.74	105.18	0					18	9	3	0	0	0	0.16264	1	11773	11773		82.75	0	1	362090			62085	4010	51180	51229	68159	68159					0.06578323240421469
VQTFGLGC	8	Unmodified	_VQTFGLGC_					0	0	0			REV__ENSG00000099326|ENST00000215057|MZF1	REV__ENSG00000099326|ENST00000215057|MZF1	MULTI-MSMS	OvCa99_classI_Rep5	1	412.7040100097656	2	412.702189	823.389824	0.87685	0.00036188	2.4527	0.0010122	3.3295	0.0013741	412.7035160350844	30.816	1.8233	30.816	29.835	31.658	0					92	36	3	0	0	0	0.71369	1	1289	1289		40.573	3.5441	1	467700	+		62086	17321	51181	51230	68160	68160					-0.02893490962821943
VQTGPRLG	8	Unmodified	_VQTGPRLG_					0	0	0			REV__ENSG00000155962|ENST00000369449|CLIC2;REV__ENST00000465553.5_1_X:154508114-154563754:-|nuORF	REV__ENST00000465553.5_1_X:154508114-154563754:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	413.241455078125	2	414.240327	826.466101	0.15506	6.4234E-05	-2.3201	-0.0009611	-2.1651	-0.00089686	414.2389262648117	65.187	0.86948	61.702	61.309	62.179	-3.4854					24	17	2	0	0	0	0.028476	1	4667	4667		23.042	0	1	47766	+		62087	20451;26170	51182	51231	68161	68161					0.04592648928792187
VQTLRPFS	8	Unmodified	_VQTLRPFS_					0	0	0			REV__INSRR|p.A1268Gfs*13|1|0.08|ENSG00000027644|chr1:156840964-156840965|-/C|frameshift_variant	REV__INSRR|p.A1268Gfs*13|1|0.08|ENSG00000027644|chr1:156840964-156840965|-/C|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	474.2704772949219	2	474.269084	946.523616	-0.51239	-0.00024301	4.1569	0.0019715	3.6445	0.0017285	474.2709783740168	25.377	1.1	25.377	25.042	26.142	0					32	21	2	0	0	0	0.64026	1	560	560		55.504	4.1688	1	43984	+		62088	16574	51183	51232	68162	68162					0.04821491134373446
VQTLTLPP	8	Unmodified	_VQTLTLPP_					0	0	0		ENST00000557397.5_1_14:58877654-58893880:-|nuORF;ENST00000555404.5_2_14:58878684-58893904:-|nuORF;ENST00000395159.6_2_14:58878688-58893913:-|nuORF;ENST00000216463.8_1_14:58877574-58893913:-|nuORF	ENST00000557397.5_1_14:58877654-58893880:-|nuORF	ENST00000557397.5_1_14:58877654-58893880:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	434.7590637207031	2	434.760561	867.506569	-0.54476	-0.00023684	-2.3576	-0.001025	-2.9023	-0.0012618	434.7594502813862	138.35	2.0585	138.12	137.54	139.6	-0.22697					104	41	4	0	0	0	0.72896	1	13888	13888		37.159	3.6435	1	279250			62089	9677	51184	51233	68163	68163					0.06751570528570028
VQTPPFLWPH	10	Unmodified	_VQTPPFLWPH_					0	0	0			REV__ENST00000389916.4_1_17:72350510-72351539:+|nuORF	REV__ENST00000389916.4_1_17:72350510-72351539:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	611.3518676757812	2	611.324391	1220.63423	-3.0892	-0.0018885	4.2533	0.0026002	1.1641	0.00071163	611.3269136812297	147.64	1.6457	147.41	146.37	148.02	-0.22697					61	32	2	0	0	0	0.027204	1	14826	14826		24.203	1.1603	1	28608	+		62090	25233	51185	51234	68164	68164					0.032737111225969784
VQTQSLVQN	9	Unmodified	_VQTQSLVQN_					0	0	0			REV__ENSG00000147465|ENST00000276449|STAR	REV__ENSG00000147465|ENST00000276449|STAR	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.7840270996094	2	508.772188	1015.52982	2.2546	0.0011471	0.4045	0.0002058	2.6591	0.0013529	508.77221262996073	79.933	1.2954	79.933	79.276	80.571	0					65	31	4	0	0	0	0.027461	1	8112	8112		40.778	7.2626	1	2723400	+		62091	20068	51186	51235	68165	68165					0.022679645752418764
VQTSQITKI	9	Unmodified	_VQTSQITKI_					0	0	0		ENSG00000198876|ENST00000361264|DCAF12	ENSG00000198876|ENST00000361264|DCAF12	ENSG00000198876|ENST00000361264|DCAF12	MULTI-MSMS	OvCa99_classI_Rep5	1	509.3014831542969	2	509.300581	1016.58661	-0.77858	-0.00039653	-0.21149	-0.00010771	-0.99007	-0.00050424	509.30025103093175	64.28	0.6091	64.28	63.935	64.544	0					30	14	3	0	0	0	0.075618	1	5840	5840		104.01	7.98	1	1269200			62092	8896	51187	51236	68166	68166					0.07898012131749965
VQTTQRKL	8	Unmodified	_VQTTQRKL_					0	0	0		ENST00000578618.5_1_18:5398595-5399237:-|nuORF	ENST00000578618.5_1_18:5398595-5399237:-|nuORF	ENST00000578618.5_1_18:5398595-5399237:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.2803039550781	2	487.293091	972.571629	-0.16399	-7.991E-05	2.568	0.0012514	2.4041	0.0011715	487.29341420640833	94.265	0.70432	93.165	92.853	93.558	-1.0995					26	13	4	0	0	0	0.028476	1	8463	8463		42.396	0	1	27831			62093	13968	51188	51237	68167	68167					0.08424565054417599
VQVAEDLVKL	10	Unmodified	_VQVAEDLVKL_					0	0	0			REV__ENSG00000171811|ENST00000368586|CFAP46	REV__ENSG00000171811|ENST00000368586|CFAP46	MULTI-MSMS	OvCa9_classI_Rep3	3	557.330322265625	2	557.329339	1112.64412	-0.56024	-0.00031224	-2.874	-0.0016017	-3.4342	-0.001914	557.3293455738343	109.32	1.5759	108.18	107.72	109.29	-1.1444					86	29	5	0	0	0	0.50999	1	7832	7832		52.937	1.6012	1	360550	+		62094	21648	51189	51238	68168	68168					0.0923085433732922
VQVAGQEQW	9	Unmodified	_VQVAGQEQW_					0	0	0			REV__ENSG00000145888|ENST00000274576|GLRA1	REV__ENSG00000145888|ENST00000274576|GLRA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.314453125	2	522.759081	1043.50361	-0.5935	-0.00031026	3.3686	0.001761	2.7751	0.0014507	522.760607787912	47.193	0.61314	47.193	46.938	47.551	0					19	13	2	0	0	0	0.027462	1	3431	3431		37.159	15.199	1	95703	+		62095	19989	51190	51239	68169	68169					-0.016403045962533724
VQVFLLMEQE	10	Unmodified	_VQVFLLMEQE_					0	0	0		ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	ENSG00000083097|ENST00000349129|DOP1A	MULTI-MSMS	OvCa9_classI_Rep4_	4	618.3206787109375	2	618.320657	1234.62676	-1.0712	-0.00066232	1.417	0.00087616	0.34584	0.00021384	618.3212200119873	124.54	1.2461	123.15	122.87	124.11	-1.3908					64	23	5	0	0	0	0.6349	1	11823	11823		37.812	1.3648	1	149640			62096	1687	51191	51240	68170	68170					0.018831907400226555
VQVGTFGDG	9	Unmodified	_VQVGTFGDG_					0	0	0			REV__tr|A0A7D7A2W1|A0A7D7A2W1_9CLOTPhagetailtapemeasureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19185PE=4SV=1	REV__tr|A0A7D7A2W1|A0A7D7A2W1_9CLOTPhagetailtapemeasureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19185PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	440.7495422363281	2	440.213975	878.413397	0.50822	0.00022373	-0.94874	-0.00041765	-0.44052	-0.00019393	440.21340227627337	114	1.6768	112.55	112.2	113.87	-1.4461					63	32	3	0	0	0	0.027462	1	10650	10650		21.96	4.5949	1	199710	+		62097	32555	51192	51241	68171	68171					-0.030673539246663495
VQVLIEHI	8	Unmodified	_VQVLIEHI_					0	0	0		nc|ENSG00000141367|Q00610-2|CLTC;ENSG00000141367|ENST00000269122|CLTC;VMP1-CLTC|1|fusion	nc|ENSG00000141367|Q00610-2|CLTC	nc|ENSG00000141367|Q00610-2|CLTC	MULTI-MSMS	OvCa99_classI_Rep5	1	475.788330078125	2	475.78711	949.559667	2.1324	0.0010146	0.3978	0.00018927	2.5302	0.0012038	475.78706440698346	95.517	1.0097	95.517	95.244	96.253	0					52	23	4	0	0	0	0.057506	2	10416	10416;10444		157.21	51.94	1	7140600			62098	4906	51193	51242	68172;68173	68172					0.08286948311229025
VQVLKVVENAL	11	Unmodified	_VQVLKVVENAL_					0	0	0		ENSG00000086200|ENST00000325324|IPO11;nc|ENSG00000086200|Q9UI26-2|IPO11	ENSG00000086200|ENST00000325324|IPO11	ENSG00000086200|ENST00000325324|IPO11	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3698120117188	2	606.371538	1210.72852	-3.14	-0.001904	-0.05994	-3.6346E-05	-3.1999	-0.0019404	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.72491	1	14967	14967		16.717	3.2633	1	257720			62099	1749	51194	51243	68174	68174					0.13158805154102993
VQVLSLKPG	9	Unmodified	_VQVLSLKPG_					0	0	0			REV__tr|A0A553SJD4|A0A553SJD4_NIACIUndecaprenyl-diphosphataseOS=NialliacirculansOX=1397GN=uppPPE=3SV=1	REV__tr|A0A553SJD4|A0A553SJD4_NIACIUndecaprenyl-diphosphataseOS=NialliacirculansOX=1397GN=uppPPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	471.78997802734375	2	470.794935	939.575317	-1.2663	-0.00059615	0.98995	0.00046606	-0.27632	-0.00013009	470.7952731383715	50.707	0.74177	47.913	47.63	48.372	-2.794					24	14	2	0	0	0	0.027462	1	3252	3252		31.955	7.7521	1	60522	+		62100	29998	51195	51244	68175	68175					0.10311234828293436
VQVNAKLVI	9	Unmodified	_VQVNAKLVI_					0	0	0		nc|ENSG00000153922|O14646-2|CHD1;ENSG00000153922|ENST00000614616|CHD1;ENST00000514344.5_1_5:98208119-98208242:-|nuORF	nc|ENSG00000153922|O14646-2|CHD1	nc|ENSG00000153922|O14646-2|CHD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.20379638671875	2	492.316035	982.617516	2.2846	0.0011248	0.324	0.00015951	2.6086	0.0012843	492.31593636135045	91.643	0.59328	91.643	91.415	92.008	0					30	13	3	0	0	0	0.027343	1	9877	9877		79.451	8.1553	1	929860			62101	5701	51196	51245	68176	68176					0.12551210236654242
VQVPPRFVNKV	11	Unmodified	_VQVPPRFVNKV_					0	0	0		ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.P6706Tfs*18|1|0.25|ENSG00000154358|chr1:228370088-228370089|-/GA|frameshift_variant;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN	ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN	ENSG00000154358|ENST00000680850|OBSCN	MULTI-MSMS	OvCa9_classI_Rep2	2	641.88134765625	2	641.885147	1281.75574	-4.6434	-0.0029805	0.6524	0.00041876	-3.991	-0.0025618	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.67529	5	15688	15504;15588;15629;15688;15748		37.812	7.2427	1	543390			62102	5731;15107	51197	51246	68177;68178;68179;68180;68181	68180					0.1261333348509197
VQVPPRFVNKV	11	Unmodified	_VQVPPRFVNKV_					0	0	0		ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.P6706Tfs*18|1|0.25|ENSG00000154358|chr1:228370088-228370089|-/GA|frameshift_variant;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN	ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN	ENSG00000154358|ENST00000680850|OBSCN	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8828735351562	2	641.885147	1281.75574	-5.3554	-0.0034376	1.3541	0.00086916	-4.0013	-0.0025684	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.71498	2	13019	13019;13073		24.519	3.5723	1	804890			62103	5731;15107	51197	51246	68182;68183	68182					0.1261333348509197
VQVPPRFVNKV	11	Unmodified	_VQVPPRFVNKV_					0	0	0		ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.P6706Tfs*18|1|0.25|ENSG00000154358|chr1:228370088-228370089|-/GA|frameshift_variant;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN	ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN	ENSG00000154358|ENST00000680850|OBSCN	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8822021484375	2	641.885147	1281.75574	-3.6311	-0.0023307	-0.33677	-0.00021616	-3.9678	-0.0025469	641.8847801872174	153.39	4.0845	151.94	150.68	154.77	-1.4516					420	106	6	0	0	0	0.72473	1	15326	15326		19.104	0	1	809780			62104	5731;15107	51197	51246	68184	68184					0.1261333348509197
VQVQAVLTTF	10	Unmodified	_VQVQAVLTTF_					0	0	0			REV__ENSG00000204424|ENST00000375832|LY6G6F	REV__ENSG00000204424|ENST00000375832|LY6G6F	MULTI-SECPEP	OvCa9_classI_Rep2	2	553.80712890625	2	553.316232	1104.61791	0.45433	0.00025139	-1.3396	-0.00074121	-0.88526	-0.00048983	553.3153525793638	105.66	2.3731	105.22	104.95	107.32	-0.43642					93	47	4	0	0	0	0.026994	1	10027	10027		25.574	0	1	451800	+		62105	23154	51198	51247	68185	68185					0.0697858516582528
VQVQFRLLI	9	Unmodified	_VQVQFRLLI_					0	0	0		ENST00000431285.5_1_3:9471659-9471731:+|nuORF	ENST00000431285.5_1_3:9471659-9471731:+|nuORF	ENST00000431285.5_1_3:9471659-9471731:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	558.3511352539062	2	558.350409	1114.68626	0.949	0.00052987	-1.8776	-0.0010484	-0.92863	-0.0005185	558.3493850514238	82.213	2.1494	80.564	80.179	82.328	-1.6485					112	42	4	0	0	0	0.29717	2	6989	6989;7012		63.306	6.1956	1	1240000			62106	11800	51199	51248	68186;68187	68186					0.13350874536376978
VQVRPVIAF	9	Unmodified	_VQVRPVIAF_					0	0	0		ENST00000417761.2_1_15:44065316-44087594:-|nuORF	ENST00000417761.2_1_15:44065316-44087594:-|nuORF	ENST00000417761.2_1_15:44065316-44087594:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	514.81689453125	2	514.816202	1027.61785	-0.99197	-0.00051068	0.66613	0.00034293	-0.32584	-0.00016775	514.8162066002304	117.21	0.74255	117.08	116.86	117.61	-0.12868					29	14	3	0	0	0	0.46377	1	11225	11225		45.952	1.8352	1	119960			62107	11626	51200	51249	68188	68188					0.10514629956514909
VQVSVKTQV	9	Unmodified	_VQVSVKTQV_					0	0	0		nc|ENSG00000167258|Q9NYV4-2|CDK12;ENSG00000167258|ENST00000447079|CDK12;CDK12|p.E928Gfs*27|1|0.54|ENSG00000167258|chr17:39515740-39515741|-/G|frameshift_variant;nc|ENSG00000167258|Q9NYV4-3|CDK12;CDK12|p.S785Kfs*4|1|0.92|ENSG00000167258|chr17:39494626-39494627|-/A|frameshift_variant	nc|ENSG00000167258|Q9NYV4-2|CDK12	nc|ENSG00000167258|Q9NYV4-2|CDK12	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.7578430175781	2	494.295299	986.576045	0.28498	0.00014086	-0.70314	-0.00034756	-0.41816	-0.00020669	494.294790695004	63.29	0.71374	63.29	63.1	63.814	0					34	17	3	0	0	0	0.027446	1	5686	5686		60.118	27.306	1	851540			62108	6776	51201	51250	68189	68189					0.08222029477326487
VQVVKYLF	8	Unmodified	_VQVVKYLF_					0	0	0			REV__nc|ENSG00000072958|Q9BXS5-2|AP1M1	REV__nc|ENSG00000072958|Q9BXS5-2|AP1M1	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.2865905761719	2	498.299853	994.585153	-0.55319	-0.00027565	1.2986	0.00064709	0.74541	0.00037144	498.300683870005	67.861	0.27403	67.861	67.642	67.916	0					11	6	2	0	0	0	0.028476	1	6354	6354		35.201	1.6851	1	151170	+		62109	16928	51202	51251	68190	68190					0.08764422833644403
VQVVLITT	8	Unmodified	_VQVVLITT_					0	0	0		tr|A0A553SGB0|A0A553SGB0_NIACI23SrRNA(Uracil(1939)-C(5))-methyltransferaseRlmDOS=NialliacirculansOX=1397GN=rlmDPE=3SV=1	tr|A0A553SGB0|A0A553SGB0_NIACI23SrRNA(Uracil(1939)-C(5))-methyltransferaseRlmDOS=NialliacirculansOX=1397GN=rlmDPE=3SV=1	tr|A0A553SGB0|A0A553SGB0_NIACI23SrRNA(Uracil(1939)-C(5))-methyltransferaseRlmDOS=NialliacirculansOX=1397GN=rlmDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	436.7751159667969	2	436.776211	871.537869	-1.3218	-0.00057733	-1.7819	-0.0007783	-3.1037	-0.0013556	436.77534043072393	144.04	2.131	143.81	143.2	145.33	-0.22697					119	42	4	0	0	0	0.75241	1	14536	14536		25.45	0	1	537180			62110	33138	51203	51252	68191	68191					0.0969614356264401
VQYATEPEL	9	Unmodified	_VQYATEPEL_					0	0	0			REV__nc|ENSG00000120156|Q02763-2|TEK	REV__nc|ENSG00000120156|Q02763-2|TEK	MULTI-MSMS	OvCa99_classI_Rep5	1	525.2630615234375	2	525.261122	1048.50769	1.6724	0.00087845	0.40875	0.0002147	2.0812	0.0010931	525.26118166203	136.55	0.90443	136.55	136.21	137.11	0					46	18	4	0	0	0	0.33652	1	15901	15901		58.782	3.2778	1	775960	+		62111	18487	51204	51253	68192	68192					-0.014622598931964603
VQYHGQHRV	9	Unmodified	_VQYHGQHRV_					0	0	0		ENST00000556605.5_1_14:69865414-69865501:+|nuORF	ENST00000556605.5_1_14:69865414-69865501:+|nuORF	ENST00000556605.5_1_14:69865414-69865501:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	562.2908935546875	2	562.291414	1122.56827	-0.37263	-0.00020952	-0.27281	-0.0001534	-0.64543	-0.00036292	562.2912306224849	28.066	0.79714	28.066	27.891	28.688	0					36	15	4	0	0	0	0.24951	1	880	880		68.787	7.8149	1	1417300			62112	13668	51205	51254	68193	68193					0.011893150004198105
VQYNEPLKV	9	Unmodified	_VQYNEPLKV_					0	0	0		ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	ENSG00000148843|ENST00000369797|PDCD11	MULTI-MSMS	OvCa99_classI_Rep5	1	545.3021240234375	2	545.300581	1088.58661	2.0962	0.001143	-0.54625	-0.00029787	1.5499	0.00084517	545.3002168562239	78.477	0.86291	78.477	78.174	79.037	0					50	20	4	0	0	0	0.055627	1	7948	7948		115.49	13.893	1	7949000			62113	5429	51206	51255	68194	68194					0.0458601213174461
VQYVALRNI	9	Unmodified	_VQYVALRNI_					0	0	0		nc|ENSG00000006125|P63010-3|AP2B1;nc|ENSG00000006125|P63010|AP2B1;ENSG00000006125|ENST00000610402|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	nc|ENSG00000006125|P63010-3|AP2B1	MULTI-MSMS	OvCa99_classI_Rep5	1	538.3184814453125	2	538.316566	1074.61858	2.6595	0.0014317	-1.2234	-0.00065858	1.4361	0.00077309	538.3156955580063	107.88	1.6217	107.88	107.4	109.02	0					104	37	5	0	0	0	0.31747	1	12283	12283		60.972	0	1	37581000			62114	872	51207	51256	68195	68195					0.0842542460554796
VRAALLAQ	8	Unmodified	_VRAALLAQ_					0	0	0			REV__nc|ENSG00000107331|Q9BZC7|ABCA2	REV__nc|ENSG00000107331|Q9BZC7|ABCA2	MULTI-MSMS	OvCa9_classI_Rep2	2	421.2665710449219	2	421.266345	840.518136	0.38381	0.00016169	-0.26705	-0.0001125	0.11676	4.9187E-05	421.2661241842314	40.583	1.4287	37.873	37.551	38.98	-2.7097					85	28	4	0	0	0	0.71369	1	2069	2069		40.573	0	1	557040	+		62115	17843	51208	51257	68196	68196					0.09149812342548103
VRAAQSLLL	9	Unmodified	_VRAAQSLLL_					0	0	0		ENST00000528902.1_1_17:72960370-72968856:-|nuORF	ENST00000528902.1_1_17:72960370-72968856:-|nuORF	ENST00000528902.1_1_17:72960370-72968856:-|nuORF	MSMS	OvCa9_classI_Rep4_	4	485.8030700683594	2	485.805834	969.597115	NaN	NaN	NaN	NaN	NaN	NaN	NaN	151.27	1	149.84	149.34	150.34	-1.4344								0	0	0	0.19223	1	14949	14949		27.882	2.3082	1				62116	13264	51209	51258	68197	68197					0.11110039576851705
VRAEACERP	9	Unmodified	_VRAEACERP_					0	0	0			REV__ENST00000422647.5_1_7:99156430-99158253:+|nuORF	REV__ENST00000422647.5_1_7:99156430-99158253:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.31640625	2	515.758558	1029.50256	-1.5169	-0.00078237	-4.1596	-0.0021453	-5.6765	-0.0029277	515.7561876085812	64.079	0.73366	64.079	63.854	64.588	0					38	17	3	0	0	0	0.027462	1	5868	5868		45.972	3.5761	1	1073300	+		62117	25623	51210	51259	68198	68198					-0.011008422367922321
VRAEVEQKL	9	Unmodified	_VRAEVEQKL_					0	0	0		nc|ENSG00000060339|Q8IX12-2|CCAR1;ENSG00000060339|ENST00000265872|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	nc|ENSG00000060339|Q8IX12-2|CCAR1	MULTI-MSMS	OvCa99_classI_Rep5	1	536.3112182617188	2	536.31148	1070.60841	0.1246	6.6825E-05	-0.2028	-0.00010876	-0.0782	-4.194E-05	536.3113547975499	46.479	1.3591	46.479	45.934	47.294	0					57	30	4	0	0	0	0.060996	1	3276	3276		112.41	4.3234	1	5059100			62118	1260	51211	51260	68199	68199					0.07592816880332975
VRAFAWRRGR	10	Unmodified	_VRAFAWRRGR_					0	0	0			REV__PET112-FAM160A1|1|fusion	REV__PET112-FAM160A1|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep3	3	424.910400390625	3	425.58289	1273.72684	1.8304	0.000779	-2.7773	-0.001182	-0.9469	-0.00040298	425.5815861795021	65.103	0.55698	62.142	61.829	62.386	-2.961					18	10	2	0	0	0	0.027033	1	2603	2603		33.922	10.544	1	29651	+		62119	29287	51212	51261	68200	68200					0.10092653699348375
VRAFLRYKWWR	11	Unmodified	_VRAFLRYKWWR_					0	0	0		ENST00000320934.7_1_11:117076372-117076591:-|nuORF	ENST00000320934.7_1_11:117076372-117076591:-|nuORF	ENST00000320934.7_1_11:117076372-117076591:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.2789306640625	3	527.636883	1579.88882	-1.0209	-0.00053866	1.4755	0.00077854	0.45463	0.00023988	527.6377899297393	46.839	0.771	43.766	43.501	44.272	-3.0724					23	14	2	0	0	0	0.026497	1	2518	2518		9.6461	6.4348	1	34105			62120	10371	51213	51262	68201	68201					0.12207197661609825
VRAGLRSP	8	Unmodified	_VRAGLRSP_					0	0	0		ENST00000269260.6_1_17:4624342-4624531:+|nuORF	ENST00000269260.6_1_17:4624342-4624531:+|nuORF	ENST00000269260.6_1_17:4624342-4624531:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	428.2608337402344	2	428.261594	854.508634	-2.1797	-0.00093349	2.171	0.00092976	-0.0087153	-3.7324E-06	428.2624599299376	144.02	1.6837	143.79	143.2	144.88	-0.22697					114	33	5	0	0	0	0.75006	1	14531	14531		16.473	0.83134	1	330270			62121	9983	51214	51263	68202	68202					0.0755604405703707
VRAGPGLSP	9	Unmodified	_VRAGPGLSP_					0	0	0		ENST00000542267.5_1_5:107717706-107717757:-|nuORF	ENST00000542267.5_1_5:107717706-107717757:-|nuORF	ENST00000542267.5_1_5:107717706-107717757:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	427.2493591308594	2	427.248152	852.481751	1.5566	0.00066506	3.5202	0.001504	5.0768	0.002169	427.2495609985841	89.973	1.9784	88.671	88.334	90.312	-1.302					100	38	4	0	0	0	0.36502	1	7955	7955		55.504	0	1	774900			62122	13476	51215	51264	68203	68203					0.049609354458425514
VRAGRLGEA	9	Unmodified	_VRAGRLGEA_					0	0	0			REV__ENST00000477081.1_1_17:59482609-59483362:+|nuORF	REV__ENST00000477081.1_1_17:59482609-59483362:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	464.77294921875	2	464.769783	927.525013	0.010658	4.9535E-06	3.9793	0.0018494	3.9899	0.0018544	464.77154826400294	52.883	1.5238	52.883	52.566	54.089	0					98	35	4	0	0	0	0.36502	1	4174	4174		55.504	2.1528	1	10355000	+		62123	26378	51216	51265	68204	68204					0.05835125223120485
VRAGSATAAAR	11	Unmodified	_VRAGSATAAAR_					0	0	0		nc|ENSG00000178607|O75460-2|ERN1	nc|ENSG00000178607|O75460-2|ERN1	nc|ENSG00000178607|O75460-2|ERN1	MULTI-MSMS	OvCa9_classI_Rep2	2	515.79296875	2	515.791247	1029.56794	-0.78304	-0.00040389	3.0503	0.0015733	2.2673	0.0011694	515.7927187364921	120.88	1.4824	120.68	120.36	121.84	-0.19718					73	29	3	0	0	0	0.68399	1	11700	11700		35.152	5.982	1	156340			62124	15197	51217	51266	68205	68205					0.05433895280543766
VRAIAVQKL	9	Unmodified	_VRAIAVQKL_					0	0	0		ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	ENSG00000105851|ENST00000496166|PIK3CG	MULTI-MSMS	OvCa99_classI_Rep5	1	499.3304443359375	2	499.329476	996.6444	-0.46158	-0.00023048	0.008489	4.2388E-06	-0.45309	-0.00022624	499.32931144472104	58.935	0.4646	58.935	58.655	59.12	0					31	11	3	0	0	0	0.11171	1	5027	5027		94.006	10.719	1	3964500			62125	2506	51218	51267	68206	68206					0.1459431884784408
VRAILLPL	8	Unmodified	_VRAILLPL_					0	0	0		tr|A0A553SHK6|A0A553SHK6_NIACIHD-GYPdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13160PE=4SV=1	tr|A0A553SHK6|A0A553SHK6_NIACIHD-GYPdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13160PE=4SV=1	tr|A0A553SHK6|A0A553SHK6_NIACIHD-GYPdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13160PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	447.8097229003906	2	447.810388	893.606223	2.3596	0.0010567	-2.2034	-0.00098669	0.15624	6.9965E-05	447.80924171861284	134.58	1.3224	134.35	134.05	135.37	-0.22696					50	26	3	0	0	0	0.75991	1	13338	13338		21.702	0	1	54040			62126	33281	51219	51268	68207	68207					0.1551643293316829
VRAILLPL	8	Unmodified	_VRAILLPL_					0	0	0		tr|A0A553SHK6|A0A553SHK6_NIACIHD-GYPdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13160PE=4SV=1	tr|A0A553SHK6|A0A553SHK6_NIACIHD-GYPdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13160PE=4SV=1	tr|A0A553SHK6|A0A553SHK6_NIACIHD-GYPdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_13160PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	447.810388	893.606223	2.545	0.0011397	-0.45427	-0.00020343	2.0907	0.00093625	447.8102313774978	134.23	0.28279	134.23	134.06	134.34	0	-0.06179	0.0013385	NaN	21.702	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20944			62127	33281	51219	51268							0.1551643293316829
VRALSLGGQV	10	Unmodified	_VRALSLGGQV_					0	0	0		nc|ENSG00000159164|Q7L0J3-2|SV2A;ENSG00000159164|ENST00000369146|SV2A	nc|ENSG00000159164|Q7L0J3-2|SV2A	nc|ENSG00000159164|Q7L0J3-2|SV2A	MULTI-MSMS	OvCa99_classI_Rep5	1	500.3019104003906	2	500.300916	998.587279	-0.53177	-0.00026604	-0.24099	-0.00012057	-0.77276	-0.00038661	500.30078428503873	48.352	1.3453	48.352	48.073	49.418	0					65	30	4	0	0	0	0.22663	1	3539	3539		90.37	8.0648	1	11140000			62128	5988	51220	51269	68208	68208					0.08792851571467963
VRAMLVSRPPI	11	Unmodified	_VRAMLVSRPPI_					0	0	0			REV__ENST00000325888.12_1_7:128484306-128484751:+|nuORF	REV__ENST00000325888.12_1_7:128484306-128484751:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8679809570312	2	619.873725	1237.7329	-3.8587	-0.0023919	-3.029	-0.0018776	-6.8877	-0.0042695	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.68021	1	15158	15158		36.447	6.129	1	492670	+		62129	24487	51221	51270	68209	68209					0.12353991096006212
VRAMLVSRPPI	11	Unmodified	_VRAMLVSRPPI_					0	0	0			REV__ENST00000325888.12_1_7:128484306-128484751:+|nuORF	REV__ENST00000325888.12_1_7:128484306-128484751:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8694458007812	2	619.873725	1237.7329	-3.6059	-0.0022352	-3.3723	-0.0020904	-6.9782	-0.0043256	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.60323	5	12684	12673;12684;12791;12929;12947		44.377	8.662	1	664560	+		62130	24487	51221	51270	68210;68211;68212;68213;68214	68211					0.12353991096006212
VRAMLVSRPPI	11	Unmodified	_VRAMLVSRPPI_					0	0	0			REV__ENST00000325888.12_1_7:128484306-128484751:+|nuORF	REV__ENST00000325888.12_1_7:128484306-128484751:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8705444335938	2	619.873725	1237.7329	-3.1194	-0.0019336	-3.9204	-0.0024301	-7.0397	-0.0043637	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.56391	1	14886	14886		47.96	1.9873	1	806750	+		62131	24487	51221	51270	68215	68215					0.12353991096006212
VRANPDQE	8	Unmodified	_VRANPDQE_					0	0	0			REV__tr|A0A7D7A2C2|A0A7D7A2C2_9CLOTS-adenosylmethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metKPE=3SV=1	REV__tr|A0A7D7A2C2|A0A7D7A2C2_9CLOTS-adenosylmethioninesynthaseOS=ClostridiumintestinaleOX=36845GN=metKPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	464.72760009765625	2	464.727781	927.441008	-0.094047	-4.3706E-05	-0.045604	-2.1193E-05	-0.13965	-6.49E-05	464.72774191107004	30.309	0.54564	30.309	30.136	30.682	0					20	10	3	0	0	0	0.72896	1	1160	1160		37.159	0	1	211380	+		62132	32532	51222	51271	68216	68216					-0.025614506644274115
VRANRHLIQ	9	Unmodified	_VRANRHLIQ_					0	0	0		L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|10|1|sense	L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|10|1|sense	L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|10|1|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8299560546875	2	553.830706	1105.64686	-0.8401	-0.00046527	-0.49633	-0.00027488	-1.3364	-0.00074015	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.6653	1	14150	14150		24.203	0.68005	1	245610			62133	14727	51223	51272	68217	68217					0.09826167305527633
VRAPGRVN	8	Unmodified	_VRAPGRVN_					0	0	0		nc|ENSG00000156958|Q01415-2|GALK2;ENSG00000156958|ENST00000560031|GALK2;ENST00000559040.1_1_15:49448112-49518881:+|nuORF	nc|ENSG00000156958|Q01415-2|GALK2	nc|ENSG00000156958|Q01415-2|GALK2	MULTI-MSMS	OvCa9_classI_Rep4_	4	434.7590026855469	2	434.759218	867.503883	3.5305	0.0015349	-3.4726	-0.0015098	0.05787	2.516E-05	434.7576043872035	134.83	0.98985	133.28	133.02	134.01	-1.5437					40	19	3	0	0	0	0.75661	1	13041	13041		19.36	0	1	52300			62134	5865	51224	51273	68218	68218					0.06483159914273529
VRAPRVGG	8	Unmodified	_VRAPRVGG_					0	0	0		ENST00000290858.10_1_16:67063120-67063363:+|nuORF	ENST00000290858.10_1_16:67063120-67063363:+|nuORF	ENST00000290858.10_1_16:67063120-67063363:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	406.24822998046875	2	406.248486	810.48242	0.12737	5.1745E-05	0.179	7.2718E-05	0.30637	0.00012446	406.2484453732125	140.19	2.0181	139.96	139.4	141.42	-0.22697					109	40	4	0	0	0	0.74679	1	14091	14091		28.254	6.5519	1	304300			62135	10091	51225	51274	68219	68219					0.06959774885569914
VRAPTTTTA	9	Unmodified	_VRAPTTTTA_					0	0	0			REV__ENST00000375114.7_1_20:32581481-32619357:+|nuORF	REV__ENST00000375114.7_1_20:32581481-32619357:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	459.2558288574219	2	459.256174	916.497795	-0.12634	-5.8024E-05	-0.37824	-0.00017371	-0.50458	-0.00023173	459.25582723409684	47.255	0.98959	44.545	44.242	45.231	-2.7097					48	19	3	0	0	0	0.44568	1	2887	2887		47.657	0	1	216050	+		62136	25080	51226	51275	68220	68220					0.03620596892062622
VRAQAGQRPVL	11	Unmodified	_VRAQAGQRPVL_					0	0	0		ENST00000601780.5_1_19:50985512-50985971:+|nuORF	ENST00000601780.5_1_19:50985512-50985971:+|nuORF	ENST00000601780.5_1_19:50985512-50985971:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8563842773438	2	597.856921	1193.69929	-2.7036	-0.0016164	1.7084	0.0010214	-0.99524	-0.00059501	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.69455	1	12558	12558		31.53	3.4483	1	591030			62137	14228	51227	51276	68221	68221					0.11018705648461946
VRAQSGPVR	9	Unmodified	_VRAQSGPVR_					0	0	0			REV__ENSG00000124143|ENST00000373345|ARHGAP40	REV__ENSG00000124143|ENST00000373345|ARHGAP40	MULTI-MSMS	OvCa9_classI_Rep2	2	485.2829895019531	2	485.283057	968.551562	-1.9489	-0.00094577	1.6904	0.00082031	-0.25853	-0.00012546	485.2837680529316	35.087	1.3898	32.377	32.109	33.499	-2.7097					66	27	4	0	0	0	0.68424	1	1426	1426		21.96	2.5999	1	549360	+		62138	18664	51228	51277	68222	68222					0.06602814114478406
VRARPRQQI	9	Unmodified	_VRARPRQQI_					0	0	0			REV__ENSG00000162571|ENST00000379289|TTLL10	REV__ENSG00000162571|ENST00000379289|TTLL10	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3458862304688	2	562.343981	1122.67341	2.5554	0.001437	-3.6335	-0.0020433	-1.0782	-0.0006063	562.341833951132	139.43	3.4203	137.93	136.47	139.89	-1.4952					166	69	3	0	0	0	0.59983	1	13591	13591		31.955	5.1588	1	141360	+		62139	20745	51229	51278	68223	68223					0.11697856196838075
VRARVSEWPPK	11	Unmodified	_VRARVSEWPPK_					0	0	0		ENSG00000116991|ENST00000674635|SIPA1L2	ENSG00000116991|ENST00000674635|SIPA1L2	ENSG00000116991|ENST00000674635|SIPA1L2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	442.6031188964844	3	442.254328	1323.74115	-1.7797	-0.00078709	2.9387	0.0012996	1.159	0.00051256	442.2548304762771	50.227	0.52123	47.086	46.922	47.444	-3.1416					13	9	2	0	0	0	0.025668	1	2884	2884		28.577	0	1	5142			62140	3226	51230	51279	68224	68224					0.09223261336978794
VRASELARDR	10	Unmodified	_VRASELARDR_					0	0	0		ENST00000460289.5_1_2:120517896-120637673:+|nuORF;ENST00000485247.1_1_2:120517896-120640079:+|nuORF;PTPN4|p.L831Qfs*34|1|0.07|ENSG00000088179|chr2:119965578-119965603|CTAGATTTTGTTTGTCATGTACGAAA/-|frameshift_variant;ENSG00000088179|ENST00000263708|PTPN4	ENST00000460289.5_1_2:120517896-120637673:+|nuORF	ENST00000460289.5_1_2:120517896-120637673:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	586.8231811523438	2	586.82836	1171.64217	-5.6685	-0.0033265	-2.5069	-0.0014711	-8.1754	-0.0047976	586.8267226357335	149.07	1.5069	148.12	147.65	149.16	-0.9512					81	29	4	0	0	0	0.72142	1	12585	12585		28.081	0.19925	1	213470			62141	1782	51231	51280	68225	68225					0.06321238372061089
VRASFPSL	8	Unmodified	_VRASFPSL_					0	0	0			REV__ENST00000377424.8_1_1:9129622-9129694:-|nuORF	REV__ENST00000377424.8_1_1:9129622-9129694:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	438.7505187988281	2	438.750527	875.486502	-1.0336	-0.00045351	0.70751	0.00031042	-0.32612	-0.00014309	438.75073825685286	93.031	1.2366	91.069	90.698	91.935	-1.9617					36	24	2	0	0	0	0.62474	1	5936	5936		58.782	0	1	245410	+		62142	25121	51232	51281	68226	68226					0.04377819588614784
VRASKTAVE	9	Unmodified	_VRASKTAVE_					0	0	0			REV__ENST00000590000.1_1_19:5591605-5592858:-|nuORF	REV__ENST00000590000.1_1_19:5591605-5592858:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.7877197265625	2	480.777274	959.539994	0.0071524	3.4387E-06	-1.9025	-0.00091466	-1.8953	-0.00091122	480.7787902130453	78.67	1.3672	75.919	75.619	76.986	-2.7514					67	28	4	0	0	0	0.027447	1	6320	6320		31.53	0	1	763330	+		62143	27913	51233	51282	68227	68227					0.05860572300480271
VRAVEKRGPR	10	Unmodified	_VRAVEKRGPR_					0	0	0		ENST00000486056.1_1_9:35732760-35733244:+|nuORF	ENST00000486056.1_1_9:35732760-35733244:+|nuORF	ENST00000486056.1_1_9:35732760-35733244:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3563232421875	2	584.357088	1166.69962	-1.7162	-0.0010029	0.61767	0.00036094	-1.0985	-0.00064192	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.80581	1	14457	14457		18.262	0.79408	1	833330			62144	12619	51234	51283	68228	68228					0.122941253683166
VRAVLNPTPI	10	Unmodified	_VRAVLNPTPI_					0	0	0		ENSG00000177105|ENST00000351018|RHOG	ENSG00000177105|ENST00000351018|RHOG	ENSG00000177105|ENST00000351018|RHOG	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3311767578125	2	540.332216	1078.64988	0.34656	0.00018726	-4.1131	-0.0022225	-3.7666	-0.0020352	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.72319	1	13783	13783		27.882	2.3082	1	342200			62145	7659	51235	51284	68229	68229					0.11369997639667417
VRAWVKIRWID	11	Unmodified	_VRAWVKIRWID_					0	0	0			REV__nc|ENSG00000167646|Q8N9W5-6|DNAAF3	REV__nc|ENSG00000167646|Q8N9W5-6|DNAAF3	MULTI-MSMS	OvCa9_classI_Rep3	3	481.2820129394531	3	481.285739	1440.83539	-6.6786	-0.0032143	2.0959	0.0010087	-4.5828	-0.0022056	481.2868612614486	161.01	3.7232	159.65	158.49	162.21	-1.3523					206	77	3	0	0	0	0.72524	1	14086	14086		12.433	0	1	127690	+		62146	28983	51236	51285	68230	68230					0.13260400159106212
VRAWVKIRWID	11	Unmodified	_VRAWVKIRWID_					0	0	0			REV__nc|ENSG00000167646|Q8N9W5-6|DNAAF3	REV__nc|ENSG00000167646|Q8N9W5-6|DNAAF3	MULTI-MSMS	OvCa9_classI_Rep4_	4	481.2831726074219	3	481.285739	1440.83539	-6.5406	-0.0031479	2.0344	0.00097915	-4.5062	-0.0021688	481.28689914588375	161.43	3.2893	159.81	158.56	161.85	-1.6239					191	83	3	0	0	0	0.7252	1	15887	15887		12.957	0.7508	1	100850	+		62147	28983	51236	51285	68231	68231					0.13260400159106212
VRAYIPGNQLN	11	Unmodified	_VRAYIPGNQLN_					0	0	0			REV__ENSG00000167193|ENST00000300574|CRK	REV__ENSG00000167193|ENST00000300574|CRK	MULTI-MSMS	OvCa99_classI_Rep5	1	415.56146240234375	3	415.56305	1243.66732	0.16401	6.8155E-05	-3.3634	-0.0013977	-3.1994	-0.0013296	415.56167253593975	24.813	0.35412	24.813	24.636	24.99	0					14	6	3	0	0	0	0.71582	1	493	493		24.232	1.6522	1	68764	+		62148	21260	51237	51286	68232	68232					0.05523293174655919
VRCAPHRRL	9	Unmodified	_VRCAPHRRL_					0	0	0			REV__ENST00000538784.2_1_12:132635515-132636943:+|nuORF	REV__ENST00000538784.2_1_12:132635515-132636943:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.3026733398438	2	554.319451	1106.62435	-0.37999	-0.00021064	1.2273	0.00068034	0.84735	0.0004697	554.3195058663886	103.57	0.21422	103.57	103.43	103.64	0					6	4	2	0	0	0	0.027462	1	11572	11572		45.952	20.502	1	151430	+		62149	22463	51238	51287	68233	68233					0.0753024463622296
VRCGAPAE	8	Unmodified	_VRCGAPAE_					0	0	0			REV__ENSG00000183638|ENST00000382483|RP1L1	REV__ENSG00000183638|ENST00000382483|RP1L1	MULTI-MSMS	OvCa9_classI_Rep2	2	401.6958923339844	2	401.697438	801.380322	-0.73132	-0.00029377	-3.1152	-0.0012514	-3.8465	-0.0015451	401.6960309688072	37.205	0.59149	34.495	34.287	34.879	-2.7097					28	11	3	0	0	0	0.74229	1	1650	1650		30.504	1.3541	1	85690	+		62150	22373	51239	51288	68234	68234					-0.02831259248364404
VRCLRPRF	8	Unmodified	_VRCLRPRF_					0	0	0			REV__ENST00000395443.6_1_3:49094899-49114251:-|nuORF	REV__ENST00000395443.6_1_3:49094899-49114251:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2833251953125	2	523.805645	1045.59674	-0.31187	-0.00016336	-1.5303	-0.0008016	-1.8422	-0.00096496	523.8047951100317	31.981	0.54586	31.981	31.757	32.303	0					26	10	3	0	0	0	0.028476	1	1361	1361		20.482	4.0087	1	101630	+		62151	25316	51240	51289	68235	68235					0.07576341376011442
VRCSSTLVT	9	Unmodified	_VRCSSTLVT_					0	0	0		ENSG00000160190|ENST00000352133|SLC37A1;ENST00000487951.1_1_21:43963642-43967352:+|nuORF	ENSG00000160190|ENST00000352133|SLC37A1	ENSG00000160190|ENST00000352133|SLC37A1	MULTI-SECPEP	OvCa9_classI_Rep2	2	482.7877502441406	2	483.257859	964.501166	-0.67643	-0.00032689	-2.9046	-0.0014036	-3.581	-0.0017305	483.25634297056627	57.989	1.5615	55.197	54.773	56.335	-2.7921					77	30	4	0	0	0	0.027462	1	4239	4239		30.504	0	1	397210			62152	6042	51241	51290	68236	68236					0.017495236744593967
VRCSSTLVT	9	Unmodified	_VRCSSTLVT_					0	0	0		ENSG00000160190|ENST00000352133|SLC37A1;ENST00000487951.1_1_21:43963642-43967352:+|nuORF	ENSG00000160190|ENST00000352133|SLC37A1	ENSG00000160190|ENST00000352133|SLC37A1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	483.257859	964.501166	-0.43853	-0.00021192	-2.4445	-0.0011813	-2.883	-0.0013932	483.2566541856403	55.381	0.48873	55.381	55.193	55.682	0	0.1733	0.00080857	NaN	23.042	24	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1226500			62153	6042	51241	51290							0.017495236744593967
VRCSYYRTN	9	Unmodified	_VRCSYYRTN_					0	0	0			REV__nc|ENSG00000293552|Q9H3R0-2|KDM4C	REV__nc|ENSG00000293552|Q9H3R0-2|KDM4C	MULTI-MSMS	OvCa99_classI_Rep5	1	581.2755737304688	2	581.277115	1160.53968	0.74624	0.00043377	-1.957	-0.0011376	-1.2108	-0.0007038	581.2757132850022	131.33	0.65759	131.33	131.1	131.76	0					29	13	3	0	0	0	0.51865	1	15271	15271		40.778	8.0276	1	345960	+		62154	17834	51242	51291	68237	68237					-0.03417170691022875
VRDEVAVQLL	10	Unmodified	_VRDEVAVQLL_					0	0	0			REV__nc|ENSG00000198947|P11532-3|DMD	REV__nc|ENSG00000198947|P11532-3|DMD	MULTI-MSMS	OvCa9_classI_Rep3	3	571.3319702148438	2	571.332413	1140.65027	-1.1599	-0.00066269	1.3452	0.00076858	0.18534	0.00010589	571.3328176283721	117.47	1.4872	116.44	116.09	117.58	-1.0324					92	29	6	0	0	0	0.59317	1	8821	8821		42.864	2.8061	1	214260	+		62155	23099	51243	51292	68238	68238					0.08557372568861865
VRDGIKGRFPL	11	Unmodified	_VRDGIKGRFPL_					0	0	0		CON__Q0VCM5	CON__Q0VCM5	CON__Q0VCM5	MULTI-SECPEP	OvCa9_classI_Rep2	2	420.2399597167969	3	419.919056	1256.73534	-0.12223	-5.1326E-05	3.6155	0.0015182	3.4933	0.0014669	419.92158639888424	58.627	0.29953	55.847	55.588	55.888	-2.7801					7	5	2	0	0	0	0.025995	1	4237	4237		29.551	0	1	9438.6		+	62156	634	51244	51293	68239	68239					0.11724162825316853
VRDHLGQRKQY	11	Unmodified	_VRDHLGQRKQY_					0	0	0		ENSG00000095110|ENST00000534921|NXPE1	ENSG00000095110|ENST00000534921|NXPE1	ENSG00000095110|ENST00000534921|NXPE1	MULTI-MSMS	OvCa9_classI_Rep2	2	467.2557373046875	3	467.25662	1398.74803	-1.2102	-0.00056548	0.75726	0.00035383	-0.45296	-0.00021165	467.25683535281763	53.74	1.5417	50.926	50.33	51.872	-2.8139					93	30	4	0	0	0	0.71831	1	3660	3660		23.378	0	1	218730			62157	1921	51245	51294	68240	68240					0.06460574217567228
VRDILTPIQI	10	Unmodified	_VRDILTPIQI_					0	0	0		ENSG00000115232|ENST00000397033|ITGA4;ENST00000476824.1_1_2:182363351-182392165:+|nuORF	ENSG00000115232|ENST00000397033|ITGA4	ENSG00000115232|ENST00000397033|ITGA4	MULTI-MSMS	OvCa9_classI_Rep3	3	584.3558349609375	2	584.358431	1166.70231	-4.6254	-0.0027029	1.1397	0.00066599	-3.4857	-0.0020369	584.3589865391973	145.25	4.5766	144.28	142.9	147.48	-0.97299					233	91	4	0	0	0	0.67931	1	12201	12201		32.812	3.6629	1	156220			62158	3072	51246	51295	68241	68241					0.1256253598260173
VRDKASPK	8	Unmodified	_VRDKASPK_					0	0	0			REV__ENSG00000205330|ENST00000642104|OR6C1	REV__ENSG00000205330|ENST00000642104|OR6C1	MULTI-MSMS	OvCa99_classI_Rep5	1	450.7684020996094	2	450.766709	899.518865	0.14315	6.4528E-05	-0.4515	-0.00020352	-0.30835	-0.00013899	450.7663344802516	65.251	0.7493	65.251	64.916	65.665	0					44	18	4	0	0	0	0.70469	1	5969	5969		42.396	3.1433	1	4835300	+		62159	23211	51247	51296	68242	68242					0.06508606991610577
VRDKQVRIV	9	Unmodified	_VRDKQVRIV_					0	0	0			REV__ENSG00000167880|ENST00000301607|EVPL	REV__ENSG00000167880|ENST00000301607|EVPL	MULTI-MSMS	OvCa99_classI_Rep5	1	556.8499145507812	2	556.848564	1111.68258	-0.099847	-5.56E-05	-0.32368	-0.00018024	-0.42353	-0.00023584	556.8482113281652	50.86	0.77798	50.86	50.64	51.418	0					34	17	3	0	0	0	0.31747	1	3883	3883		60.972	2.19	1	1755900	+		62160	21314	51248	51297	68243	68243					0.13120204762503818
VRDLPRHQL	9	Unmodified	_VRDLPRHQL_					0	0	0			REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	REV__nc|ENSG00000205356|Q7Z6L1-3|TECPR1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.329345703125	2	567.330539	1132.64652	-3.474	-0.0019709	2.1482	0.0012187	-1.3258	-0.00075219	567.3316103139003	145.14	4.9243	144.16	142.65	147.58	-0.97301					366	98	5	0	0	0	0.63422	1	12119	12119		27.882	2.7563	1	458690	+		62161	29108	51249	51298	68244	68244					0.08550747585650242
VRDNIADLIIF	11	Unmodified	_VRDNIADLIIF_					0	0	0			REV__nc|ENSG00000119596|P49750-3|YLPM1	REV__nc|ENSG00000119596|P49750-3|YLPM1	MULTI-MSMS	OvCa99_classI_Rep5	1	644.8684692382812	2	644.86662	1287.71869	1.3704	0.00088372	1.1346	0.00073167	2.505	0.0016154	644.8668443058746	124.49	1.7979	124.49	124.15	125.95	0					116	41	5	0	0	0	0.50761	1	14420	14420		53.089	1.8963	1	10185000	+		62162	18452	51250	51299	68245	68245					0.08633617148689154
VRDTLLALH	9	Unmodified	_VRDTLLALH_					0	0	0		IRF2BP2|p.P414Ffs*4|1|0.12|ENSG00000168264|chr1:234607661-234607662|-/AAAA|frameshift_variant;nc|ENSG00000168264|Q7Z5L9-2|IRF2BP2;ENSG00000168264|ENST00000366609|IRF2BP2	IRF2BP2|p.P414Ffs*4|1|0.12|ENSG00000168264|chr1:234607661-234607662|-/AAAA|frameshift_variant	IRF2BP2|p.P414Ffs*4|1|0.12|ENSG00000168264|chr1:234607661-234607662|-/AAAA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.3329467773438	2	519.308741	1036.60293	-0.24418	-0.0001268	-3.6911	-0.0019168	-3.9353	-0.0020436	519.3068822427335	78.459	0.85924	75.643	75.067	75.926	-2.8165					29	17	3	0	0	0	0.027462	1	6254	6254		23.042	6.5693	1	98931			62163	6884	51251	51300	68246	68246					0.08609138088490909
VREEKYIV	8	Unmodified	_VREEKYIV_					0	0	0			REV__tr|A0A7D6VNS2|A0A7D6VNS2_9CLOTProteintranslocasesubunitSecAOS=ClostridiumintestinaleOX=36845GN=secAPE=3SV=1	REV__tr|A0A7D6VNS2|A0A7D6VNS2_9CLOTProteintranslocasesubunitSecAOS=ClostridiumintestinaleOX=36845GN=secAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	518.2947387695312	2	518.295299	1034.57605	0.55863	0.00028953	-1.1323	-0.00058686	-0.57366	-0.00029732	518.2947779627386	92.589	2.8086	91.421	91.024	93.832	-1.168					161	54	5	0	0	0	0.64026	1	8265	8265		55.504	2.1528	1	5418500	+		62164	31203	51252	51301	68247	68247					0.06014029477319127
VREGLPITSLS	11	Unmodified	_VREGLPITSLS_					0	0	0		ENST00000445369.2_1_16:3063604-3064486:+|nuORF	ENST00000445369.2_1_16:3063604-3064486:+|nuORF	ENST00000445369.2_1_16:3063604-3064486:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.3358764648438	2	586.337695	1170.66084	-1.1343	-0.0006651	1.0145	0.00059483	-0.11984	-7.0267E-05	586.3381793495855	120.78	1.9995	119.43	119.03	121.03	-1.3479					99	38	4	0	0	0	0.68391	1	11429	11429		35.178	1.2566	1	268020			62165	11978	51253	51302	68248	68248					0.08233355223296712
VRELLSLTAK	10	Unmodified	_VRELLSLTAK_					0	0	0			REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	REV__nc|ENSG00000081803|Q86UW7-3|CADPS2	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.8299560546875	2	565.350606	1128.68666	0.06767	3.8257E-05	0.48884	0.00027637	0.55651	0.00031462	565.35089673665	23.311	0.25258	23.311	23.144	23.397	0					6	4	2	0	0	0	0.027198	1	306	306		14.137	0	1	20705	+		62166	17076	51254	51303	68249	68249					0.12746249465567416
VRERRAVA	8	Unmodified	_VRERRAVA_					0	0	0		ENST00000464273.1_1_2:28974903-28999853:+|nuORF	ENST00000464273.1_1_2:28974903-28999853:+|nuORF	ENST00000464273.1_1_2:28974903-28999853:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	478.79327392578125	2	478.79105	955.567546	-0.51114	-0.00024473	2.3253	0.0011133	1.8142	0.0008686	478.79207532118255	82.802	1.8434	80.505	80.235	82.079	-2.2963					87	38	5	0	0	0	0.65062	1	4711	4711		53.351	0.41475	1	1894200			62167	12246	51255	51304	68250	68250					0.08798520351365369
VRERVARA	8	Unmodified	_VRERVARA_					0	0	0			REV__ENST00000587705.5_1_17:40937392-40940185:+|nuORF	REV__ENST00000587705.5_1_17:40937392-40940185:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	478.79278564453125	2	478.79105	955.567546	0.14193	6.7955E-05	1.5566	0.00074528	1.6985	0.00081323	478.7916935444692	82.342	2.8721	80.713	80.198	83.07	-1.6293					121	56	4	0	0	0	0.66992	1	7019	7019		49.442	3.4896	1	897530	+		62168	18789	51256	51305	68251	68251					0.08798520351365369
VRFATRLMI	9	Unmodified	_VRFATRLMI_					0	0	0			REV__ENST00000455810.5_1_10:6624147-6625723:+|nuORF	REV__ENST00000455810.5_1_10:6624147-6625723:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8298950195312	2	553.828786	1105.64302	-0.8401	-0.00046527	2.9703	0.001645	2.1302	0.0011798	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.63422	1	14128	14128		27.882	3.3631	1	245610	+		62169	26019	51257	51306	68252	68252					0.09442361487435846
VRFGQQKRY	9	Unmodified	_VRFGQQKRY_					0	0	0		nc|ENSG00000143624|Q68E01-3|INTS3;ENSG00000143624|ENST00000318967|INTS3;nc|ENSG00000143624|Q68E01|INTS3	nc|ENSG00000143624|Q68E01-3|INTS3	nc|ENSG00000143624|Q68E01-3|INTS3	MULTI-MSMS	OvCa99_classI_Rep5	1	591.3310546875	2	591.330539	1180.64652	-0.79676	-0.00047115	0.36034	0.00021308	-0.43642	-0.00025807	591.3306106309358	34.169	0.71712	34.169	33.681	34.398	0					27	14	4	0	0	0	0.46377	1	1628	1628		45.952	3.5558	1	388230			62170	5079	51258	51307	68253	68253					0.06342747585654251
VRFLATLLSS	10	Unmodified	_VRFLATLLSS_					0	0	0			REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8294677734375	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.78463	1	14420	14420		20.947	1.8434	1	245610	+		62171	28896	51259	51308	68254	68254					0.10094577919835501
VRFLMIVGSSI	11	Unmodified	_VRFLMIVGSSI_					0	0	0			REV__tr|A0A553SFR4|A0A553SFR4_NIACIDUF1516familyproteinOS=NialliacirculansOX=1397GN=CEQ21_09360PE=4SV=1	REV__tr|A0A553SFR4|A0A553SFR4_NIACIDUF1516familyproteinOS=NialliacirculansOX=1397GN=CEQ21_09360PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3523559570312	2	611.354834	1220.69511	-1.5159	-0.00092675	3.5051	0.0021428	1.9892	0.0012161	611.3567832501896	147.85	3.7824	146.41	144.39	148.17	-1.4351					181	75	4	0	0	0	0.71789	1	14586	14586		23.523	1.8369	1	164640	+		62172	29613	51260	51309	68255	68255					0.0935948011056098
VRFLMSNIH	9	Unmodified	_VRFLMSNIH_					0	0	0			REV__tr|A0A553SST3|A0A553SST3_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03620PE=4SV=1	REV__tr|A0A553SST3|A0A553SST3_NIACIPRDdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03620PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	559.270751953125	2	558.802768	1115.59098	-0.1352	-7.5549E-05	1.4408	0.00080512	1.3056	0.00072957	558.8032879872294	42.312	1.6045	39.332	39.064	40.668	-2.9804					60	30	3	0	0	0	0.027462	1	1959	1959		23.042	0	1	151050	+		62173	30878	51261	51310	68256	68256					0.03781198073693304
VRFSVYPCTK	10	Unmodified	_VRFSVYPCTK_					0	0	0			REV__nc|ENSG00000095303|P23219-4|PTGS1	REV__nc|ENSG00000095303|P23219-4|PTGS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.2230224609375	3	400.546231	1198.61686	0.97085	0.00038887	-2.9475	-0.0011806	-1.9767	-0.00079176	400.5448668993054	29.246	0.59899	29.246	28.987	29.586	0					25	11	3	0	0	0	0.026714	1	1060	1060		21.032	2.5012	1	28758	+		62174	17286	51262	51311	68257	68257					0.025500475253011246
VRFYELVNPLR	11	Unmodified	_VRFYELVNPLR_					0	0	0		nc|ENSG00000083535|Q8WXW3-4|PIBF1;ENSG00000083535|ENST00000326291|PIBF1	nc|ENSG00000083535|Q8WXW3-4|PIBF1	nc|ENSG00000083535|Q8WXW3-4|PIBF1	MULTI-MSMS	OvCa99_classI_Rep5	1	469.26922607421875	3	469.269866	1404.78777	-0.7579	-0.00035566	-2.4053	-0.0011288	-3.1632	-0.0014844	469.2687057623423	49.806	0.99435	49.806	49.119	50.114	0					40	22	3	0	0	0	0.69015	1	3738	3738		33.039	5.3955	1	1700200			62175	1695	51263	51312	68258	68258					0.10156701168261861
VRFYLPLLI	9	Unmodified	_VRFYLPLLI_					0	0	0		ENSG00000120820|ENST00000360814|GLT8D2	ENSG00000120820|ENST00000360814|GLT8D2	ENSG00000120820|ENST00000360814|GLT8D2	MULTI-MSMS	OvCa99_classI_Rep5	1	567.3599853515625	2	567.357702	1132.70085	1.0899	0.00061836	0.73503	0.00041703	1.8249	0.0010354	567.3579662194804	157.32	1.3723	157.32	157	158.37	0					74	27	4	0	0	0	0.53957	1	18469	18469		38.806	1.647	1	864840			62176	3455	51264	51313	68259	68259					0.13980946684523587
VRGDLQRRVI	10	Unmodified	_VRGDLQRRVI_					0	0	0			REV__ENSG00000171298|ENST00000302262|GAA	REV__ENSG00000171298|ENST00000302262|GAA	MULTI-MSMS	OvCa9_classI_Rep2	2	606.368896484375	2	606.370195	1210.72584	-3.14	-0.001904	2.1543	0.0013063	-0.98567	-0.00059768	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.79917	1	14933	14933		19.104	0.84144	1	257720	+		62177	21607	51265	51314	68260	68260					0.12890394539795125
VRGKKKAF	8	Unmodified	_VRGKKKAF_					0	0	0		tr|A0A7D6VQZ4|A0A7D6VQZ4_9CLOTDegVfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03460PE=4SV=1	tr|A0A7D6VQZ4|A0A7D6VQZ4_9CLOTDegVfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03460PE=4SV=1	tr|A0A7D6VQZ4|A0A7D6VQZ4_9CLOTDegVfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03460PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	467.3001403808594	2	467.303262	932.59197	-2.6989	-0.0012612	-1.7541	-0.00081971	-4.453	-0.0020809	467.3023498206503	147.52	1.7467	147.29	146.82	148.57	-0.22696					88	34	4	0	0	0	0.74595	1	14952	14952		14.664	0	1	302680			62178	34882	51266	51315	68261	68261					0.12297780504889033
VRGLEKIAK	9	Unmodified	_VRGLEKIAK_					0	0	0		ENST00000459912.5_1_10:5682668-5684508:-|nuORF;ENSG00000196372|ENST00000357700|ASB13	ENST00000459912.5_1_10:5682668-5684508:-|nuORF	ENST00000459912.5_1_10:5682668-5684508:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.3081359863281	2	507.326934	1012.63931	-0.87127	-0.00044202	1.5276	0.00077498	0.6563	0.00033296	507.3282769586258	47.62	0.54487	44.91	44.588	45.133	-2.7097					13	10	2	0	0	0	0.027462	1	2923	2923		26.693	4.733	1	8337.1			62179	12142	51267	51316	68262	68262					0.1335001498522388
VRGLNYLIA	9	Unmodified	_VRGLNYLIA_					0	0	0			REV__tr|A0A7D6VZM6|A0A7D6VZM6_9CLOTSulfiteexporterTauE/SafEfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20830PE=4SV=1	REV__tr|A0A7D6VZM6|A0A7D6VZM6_9CLOTSulfiteexporterTauE/SafEfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20830PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	509.8036193847656	2	509.805834	1017.59712	-1.3099	-0.00066782	-2.9211	-0.0014892	-4.231	-0.002157	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.59983	2	11042	11042;11177		31.955	0	1	99460	+		62180	31841	51268	51317	68263;68264	68263					0.08902039576832976
VRGNRLPLR	9	Unmodified	_VRGNRLPLR_					0	0	0			REV__ENSG00000148734|ENST00000277942|NPFFR1	REV__ENSG00000148734|ENST00000277942|NPFFR1	MULTI-MSMS	OvCa9_classI_Rep2	2	540.8412475585938	2	540.841074	1079.66759	-0.50813	-0.00027482	0.34342	0.00018574	-0.16471	-8.9083E-05	540.8411675935439	31.395	0.98717	28.685	28.494	29.481	-2.7097					43	19	3	0	0	0	0.6653	1	941	941		24.203	5.8783	1	162100	+		62181	20122	51269	51318	68265	68265					0.1309475768516677
VRGPLAGR	8	Unmodified	_VRGPLAGR_					0	0	0			REV__ENST00000355631.8_1_20:62711551-62729193:+|nuORF	REV__ENST00000355631.8_1_20:62711551-62729193:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	413.2688293457031	2	413.256311	824.49807	0.14206	5.8707E-05	0.81366	0.00033625	0.95572	0.00039496	413.2568234029444	41.875	0.303	41.875	41.637	41.94	0					13	6	3	0	0	0	0.028476	1	2656	2656		40.573	13.777	1	142920	+		62182	24751	51270	51319	68266	68266					0.07880061402613592
VRGRRRRRRRR	11	Unmodified	_VRGRRRRRRRR_					0	0	0		ENST00000321143.8_1_X:11129465-11130266:+|nuORF	ENST00000321143.8_1_X:11129465-11130266:+|nuORF	ENST00000321143.8_1_X:11129465-11130266:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2836303710938	3	527.34409	1579.01044	-0.61808	-0.00032594	-2.0837	-0.0010988	-2.7018	-0.0014248	527.3415905440564	51.73	0.45105	51.73	51.461	51.912	0					18	10	3	0	0	0	0.02656	1	4006	4006		0.3405	0	1	319060			62183	10373	51271	51320	68267	68267					0.24409677587368606
VRGRWSTKVL	10	Unmodified	_VRGRWSTKVL_					0	0	0			REV__ENST00000396722.2_1_17:41158964-41164381:+|nuORF	REV__ENST00000396722.2_1_17:41158964-41164381:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	401.6958923339844	3	401.243652	1200.70913	-0.58246	-0.00023371	3.8413	0.0015413	3.2588	0.0013076	401.2451283878586	37.353	0.78685	34.643	34.386	35.173	-2.7097					25	15	2	0	0	0	0.026994	1	1650	1650		5.6988	0	1	36051	+		62184	25335	51272	51321	68268	68268					0.11679893653831641
VRGSALIAGTL	11	Unmodified	_VRGSALIAGTL_					0	0	0			REV__tr|A0A553SSN2|A0A553SSN2_NIACIPhosphatetransportsystempermeaseproteinPstAOS=NialliacirculansOX=1397GN=pstAPE=3SV=1	REV__tr|A0A553SSN2|A0A553SSN2_NIACIPhosphatetransportsystempermeaseproteinPstAOS=NialliacirculansOX=1397GN=pstAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.3241577148438	2	529.321848	1056.62914	1.5855	0.00083925	1.4634	0.00077459	3.0489	0.0016138	529.3226028011923	136.4	1.1682	134.86	134.6	135.76	-1.5437					62	23	4	0	0	0	0.48738	1	13262	13262		54.776	5.3348	1	101290	+		62185	30853	51273	51322	68269	68269					0.10309407260001535
VRGVRPQLK	9	Unmodified	_VRGVRPQLK_					0	0	0		ENST00000366641.3_1_1:231499868-231500177:-|nuORF	ENST00000366641.3_1_1:231499868-231500177:-|nuORF	ENST00000366641.3_1_1:231499868-231500177:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.81396484375	2	526.838	1051.66145	-1.1757	-0.00061943	-3.441	-0.0018129	-4.6168	-0.0024323	526.836496912174	27.415	0.24905	27.415	27.191	27.44	0					6	4	2	0	0	0	0.027462	1	796	796		38.806	15.764	1	11444			62186	10823	51274	51323	68270	68270					0.13768239453634123
VRGWEPPPGLD	11	Unmodified	_VRGWEPPPGLD_					0	0	0		nc|ENSG00000290292|Q8IX15|HOMEZ;ENST00000558278.1_1_14:23754797-23755161:-|nuORF	nc|ENSG00000290292|Q8IX15|HOMEZ	nc|ENSG00000290292|Q8IX15|HOMEZ	MULTI-SECPEP	OvCa99_classI_Rep5	1	611.2662353515625	2	611.814387	1221.61422	2.5423	0.0015554	-0.66779	-0.00040857	1.8745	0.0011469	611.8136882391989	86.06	0.59895	86.06	85.954	86.553	0					32	14	4	0	0	0	0.02596	1	9100	9100		25.574	0	1	756970			62187	15392	51275	51324	68271	68271					0.012279153919962482
VRGWLESR	8	Unmodified	_VRGWLESR_					0	0	0		ENST00000487291.1_1_2:175541243-175541375:-|nuORF	ENST00000487291.1_1_2:175541243-175541375:-|nuORF	ENST00000487291.1_1_2:175541243-175541375:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	501.29058837890625	2	501.777608	1001.54066	-1.2877	-0.00064614	0.34989	0.00017557	-0.93781	-0.00047057	501.7775163661584	135.78	0.49156	134.68	134.46	134.95	-1.1076					15	9	2	0	0	0	0.028476	1	10972	10972		24.203	0	1	13451			62188	12641	51276	51325	68272	68272					0.039954117401975964
VRHRQVKHY	9	Unmodified	_VRHRQVKHY_					0	0	0		nc|ENSG00000155926|Q13239-2|SLA;ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA	nc|ENSG00000155926|Q13239-2|SLA	nc|ENSG00000155926|Q13239-2|SLA	MULTI-MSMS	OvCa99_classI_Rep5	1	611.8485717773438	2	611.84943	1221.68431	-0.040917	-2.5035E-05	0.32545	0.00019912	0.28453	0.00017409	611.8495188774772	23.067	0.30521	23.067	22.94	23.246	0					15	5	3	0	0	0	0.53483	1	283	283		31.955	11.008	1	187070			62189	5810	51277	51326	68273	68273					0.08233258571135593
VRHRVINVN	9	Unmodified	_VRHRVINVN_					0	0	0			REV__tr|A0A553SHU1|A0A553SHU1_NIACIFUSCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_13515PE=3SV=1	REV__tr|A0A553SHU1|A0A553SHU1_NIACIFUSCfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_13515PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8295288085938	2	553.830706	1105.64686	-3.0789	-0.0017052	1.7991	0.0009964	-1.2798	-0.00070877	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.61208	1	11833	11833		30.504	11.144	1	308210	+		62190	29839	51278	51327	68274	68274					0.09826167305527633
VRHSSLLCL	9	Unmodified	_VRHSSLLCL_					0	0	0		ENSG00000139988|ENST00000551171|RDH12	ENSG00000139988|ENST00000551171|RDH12	ENSG00000139988|ENST00000551171|RDH12	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.82470703125	2	514.289494	1026.56443	-0.25663	-0.00013198	-3.322	-0.0017085	-3.5786	-0.0018404	514.7898495396813	47.117	0.52654	47.117	46.852	47.379	0					18	11	2	0	0	0	0.027433	1	3344	3344		38.806	0	1	140950			62191	4817	51279	51328	68275	68275					0.05221509182342743
VRIDWRSLIL	10	Unmodified	_VRIDWRSLIL_					0	0	0			REV__ENST00000465215.1_1_3:101659750-101679293:+|nuORF	REV__ENST00000465215.1_1_3:101659750-101679293:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	636.3300170898438	2	635.885147	1269.75574	-1.9144	-0.0012173	1.4861	0.000945	-0.4283	-0.00027235	635.886197148321	88.486	0.25391	85.883	85.73	85.984	-2.6027					7	4	2	0	0	0	0.027028	1	7551	7551		31.53	0	1	9122	+		62192	26167	51280	51329	68276	68276					0.13165333485153496
VRIEKLEKEK	10	Unmodified	_VRIEKLEKEK_					0	0	0			REV__ENSG00000203857|ENST00000369413|HSD3B1	REV__ENSG00000203857|ENST00000369413|HSD3B1	MULTI-MSMS	OvCa9_classI_Rep3	3	424.5948181152344	3	424.594238	1270.76089	1.2652	0.00053719	-0.092175	-3.9137E-05	1.173	0.00049806	424.5941494452476	69.038	2.2056	66.224	65.914	68.119	-2.8144					114	43	4	0	0	0	0.66944	1	3043	3043		33.922	5.3449	1	346080	+		62193	23115	51281	51330	68277	68277					0.1363359255708474
VRIGREEGL	9	Unmodified	_VRIGREEGL_					0	0	0		nc|ENSG00000174032|Q5SVS4-2|SLC25A30;ENSG00000174032|ENST00000519676|SLC25A30	nc|ENSG00000174032|Q5SVS4-2|SLC25A30	nc|ENSG00000174032|Q5SVS4-2|SLC25A30	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.3358154296875	2	514.795998	1027.57744	-1.2133	-0.0006246	4.3646	0.0022469	3.1513	0.0016223	514.7978689006856	65.782	0.51038	65.782	65.625	66.136	0					19	12	2	0	0	0	0.027462	1	6104	6104		42.396	6.7778	1	1289100			62194	7434	51282	51331	68278	68278					0.06475663566084222
VRIHALLVD	9	Unmodified	_VRIHALLVD_					0	0	0		CREBBP-SRL|1|fusion;CREBBP-SRL|2|fusion;ENSG00000185739|ENST00000399609|SRL;nc|ENSG00000185739|Q86TD4-1|SRL;nc|ENSG00000185739|Q86TD4-3|SRL	CREBBP-SRL|1|fusion	CREBBP-SRL|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	518.3187255859375	2	518.319109	1034.62366	0.49653	0.00025736	-2.2235	-0.0011525	-1.727	-0.00089515	518.3179257681784	139.8	5.0824	139.8	139.03	144.11	0					338	103	5	0	0	0	0.42676	1	16494	16494		49.442	1.7842	1	7167300			62195	679	51283	51332	68279	68279					0.10773728468188892
VRIHEERLRN	10	Unmodified	_VRIHEERLRN_					0	0	0			REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6	REV__nc|ENSG00000206384|A6NMZ7-2|COL6A6	MULTI-MSMS	OvCa9_classI_Rep3	3	441.25311279296875	3	441.253098	1320.73747	1.4046	0.00061976	1.5937	0.00070321	2.9982	0.001323	441.2537172485591	65.982	1.8287	63.036	62.554	64.383	-2.9459					68	35	4	0	0	0	0.77039	1	2709	2709		22.58	2.5492	1	107960	+		62196	23238	51284	51333	68280	68280					0.08992591563128371
VRILPTTLPTT	11	Unmodified	_VRILPTTLPTT_					0	0	0		ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	ENSG00000155754|ENST00000439140|C2CD6	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3695068359375	2	606.371538	1210.72852	-3.14	-0.001904	-0.05994	-3.6346E-05	-3.1999	-0.0019404	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.72485	1	14928	14928		17.468	1.4612	1	257720			62197	5798	51285	51334	68281	68281					0.13158805154057518
VRIPAKPPAAM	11	Unmodified	_VRIPAKPPAAM_					0	0	0			REV__nc|ENSG00000269502|Q5HYR2-2|DMRTC1	REV__nc|ENSG00000269502|Q5HYR2-2|DMRTC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8427124023438	2	575.841894	1149.66923	-1.5734	-0.00090602	3.9593	0.0022799	2.3859	0.0013739	575.8439449675558	145.55	4.7888	144.12	142.78	147.57	-1.4357					360	93	6	0	0	0	0.56722	2	14192	14192;14427		47.657	14.845	1	565210	+		62198	22456	51286	51335	68282;68283	68282					0.10038630658914371
VRKAIVDLK	9	Unmodified	_VRKAIVDLK_					0	0	0		nc|ENSG00000007174|Q9NYC9-2|DNAH9;DNAH9|p.H4399Qfs*22|1|0.04|ENSG00000007174|chr17:11962220-11962220|T/-|frameshift_variant;ENSG00000007174|ENST00000262442|DNAH9	nc|ENSG00000007174|Q9NYC9-2|DNAH9	nc|ENSG00000007174|Q9NYC9-2|DNAH9	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.8114013671875	2	521.342584	1040.67061	-0.5225	-0.0002724	1.7848	0.00093048	1.2623	0.00065808	521.3435660529466	67.609	0.3467	64.948	64.793	65.139	-2.661					11	6	2	0	0	0	0.027462	1	5313	5313		5.2201	0	1	17930			62199	749	51287	51336	68284	68284					0.15190588019299867
VRKARLGARC	10	Unmodified	_VRKARLGARC_					0	0	0		ENST00000392323.6_1_2:191873815-191874622:-|nuORF	ENST00000392323.6_1_2:191873815-191874622:-|nuORF	ENST00000392323.6_1_2:191873815-191874622:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	565.3377075195312	2	565.340384	1128.66621	-0.37048	-0.00020945	-3.9955	-0.0022588	-4.366	-0.0024683	565.3381146429751	42.261	0.77234	42.261	42.024	42.796	0					53	17	5	0	0	0	0.66721	1	2699	2699		34.173	1.3601	1	2354800			62200	11216	51288	51337	68285	68285					0.10702800324770578
VRKARRYSA	9	Unmodified	_VRKARRYSA_					0	0	0		nc|ENSG00000155158|Q5VTQ0-5|TTC39B;nc|ENSG00000155158|Q5VTQ0-2|TTC39B;nc|ENSG00000155158|Q5VTQ0-6|TTC39B;ENSG00000155158|ENST00000512701|TTC39B;nc|ENSG00000155158|Q5VTQ0-3|TTC39B;nc|ENSG00000155158|Q5VTQ0-4|TTC39B;nc|ENSG00000155158|Q5VTQ0|TTC39B;nc|ENSG00000155158|Q5VTQ0-7|TTC39B;ENST00000380853.1_1_9:15172019-15185442:-|nuORF	nc|ENSG00000155158|Q5VTQ0-5|TTC39B	nc|ENSG00000155158|Q5VTQ0-5|TTC39B	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8297729492188	2	553.830706	1105.64686	-3.0789	-0.0017052	1.7991	0.0009964	-1.2798	-0.00070877	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.67509	1	11676	11676		23.042	2.0956	1	308210			62201	5771	51289	51338	68286	68286					0.09826167305527633
VRKDHENRL	9	Unmodified	_VRKDHENRL_					0	0	0		nc|ENSG00000165525|O60524-4|NEMF;nc|ENSG00000165525|O60524-3|NEMF;ENSG00000165525|ENST00000298310|NEMF;ENST00000557380.5_1_14:50292586-50301128:-|nuORF;nc|ENSG00000165525|O60524-5|NEMF	nc|ENSG00000165525|O60524-4|NEMF	nc|ENSG00000165525|O60524-4|NEMF	MSMS	OvCa99_classI_Rep5	1	583.8225708007812	2	583.823078	1165.6316	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.076	1	24.076	23.576	24.576	0								0	0	0	0.035748	1	406	406		85.161	26.379	1				62202	6574	51290	51339	68287	68287					0.05541255717639615
VRKFVLKKL	9	Unmodified	_VRKFVLKKL_					0	0	0		ENST00000587994.5_1_18:47322196-47323846:-|nuORF	ENST00000587994.5_1_18:47322196-47323846:-|nuORF	ENST00000587994.5_1_18:47322196-47323846:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.8350830078125	2	565.892244	1129.76993	0.32181	0.00018211	0.81721	0.00046245	1.139	0.00064457	565.8908250806984	31.157	0.28381	31.157	31.027	31.311	0					12	5	3	0	0	0	0.027462	1	1270	1270		38.806	26.599	1	71728			62203	14072	51291	51340	68288	68288					0.2102403070409764
VRKGKKLPI	9	Unmodified	_VRKGKKLPI_					0	0	0			REV__ENSG00000134962|ENST00000257408|KLB	REV__ENSG00000134962|ENST00000257408|KLB	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.8331298828125	2	519.860944	1037.70733	1.4161	0.00073618	0.83968	0.00043652	2.2558	0.0011727	519.861201008359	87.326	0.86537	87.326	87.096	87.962	0					32	20	2	0	0	0	0.027449	1	9296	9296		60.294	6.9425	1	285220	+		62204	19244	51292	51341	68289	68289					0.18998884635902868
VRKIQPGLV	9	Unmodified	_VRKIQPGLV_					0	0	0			REV__HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|173|2|anti-sense	REV__HERVH-int_dup4306|chr11:78081300-78085065:+|1.1939161149346706|0.1845827815547973|2.69|421.0|173|2|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	505.3293762207031	2	505.329476	1008.6444	0.060672	3.0659E-05	-0.5558	-0.00028086	-0.49513	-0.0002502	505.3291044339654	71.654	1.8272	69.147	68.858	70.685	-2.5072					76	34	5	0	0	0	0.55588	1	5779	5779		37.159	3.6435	1	555060	+		62205	28247	51293	51342	68290	68290					0.14042318847850765
VRKKRRRWPWL	11	Unmodified	_VRKKRRRWPWL_					0	0	0			REV__ENST00000456101.6_1_6:109766698-109772967:-|nuORF	REV__ENST00000456101.6_1_6:109766698-109772967:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	527.660888671875	3	527.663544	1579.9688	-5.3143	-0.0028041	0.056999	3.0076E-05	-5.2573	-0.0027741	527.6634511079111	161.08	1.3896	160.85	160.33	161.72	-0.22697					71	27	3	0	0	0	0.72582	1	16397	16397		3.4087	2.0868	1	43512	+		62206	26025	51294	51343	68291	68291					0.20201684055496116
VRKLDLPVL	9	Unmodified	_VRKLDLPVL_					0	0	0		nc|ENSG00000140987|Q9NX65-3|ZSCAN32;ZSCAN32|p.S472Mfs*2|1|0.06|ENSG00000140987|chr16:3383531-3383532|-/A|frameshift_variant;nc|ENSG00000140987|Q9NX65-2|ZSCAN32;ENSG00000140987|ENST00000396852|ZSCAN32	nc|ENSG00000140987|Q9NX65-3|ZSCAN32	nc|ENSG00000140987|Q9NX65-3|ZSCAN32	MULTI-MSMS	OvCa99_classI_Rep5	1	526.8466186523438	2	526.844959	1051.67537	2.6363	0.0013889	-0.50214	-0.00026455	2.1341	0.0011244	526.8446337765208	90.097	0.73698	90.097	89.804	90.541	0					41	17	3	0	0	0	0.11471	1	9637	9637		93.195	18.94	1	2787000			62207	4887	51295	51344	68292	68292					0.1515947216207678
VRKMSNAE	8	Unmodified	_VRKMSNAE_					0	0	0		ENSG00000136770|ENST00000376980|DNAJC1;ENST00000376946.2_1_10:22209591-22217997:-|nuORF	ENSG00000136770|ENST00000376980|DNAJC1	ENSG00000136770|ENST00000376980|DNAJC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.23004150390625	2	467.742376	933.4702	-0.88543	-0.00041415	-3.0667	-0.0014344	-3.9521	-0.0018486	467.7407232744121	36.9	0.40701	36.9	36.707	37.114	0					16	8	3	0	0	0	0.028476	1	2008	2008		30.504	13.139	1	165160			62208	4512	51296	51345	68293	68293					0.0008037036020596133
VRKRAHLLT	9	Unmodified	_VRKRAHLLT_					0	0	0			REV__PSAP-SGPL1|1|fusion	REV__PSAP-SGPL1|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.3286743164062	2	547.351274	1092.688	0.55417	0.00030333	1.5815	0.00086561	2.1356	0.0011689	547.35208840111	110.1	1.2627	108.5	108.17	109.44	-1.6011					47	23	3	0	0	0	0.027462	1	10212	10212		16.473	6.2079	1	97627	+		62209	21168	51297	51346	68294	68294					0.14535928344980675
VRKRAHLLT	9	Unmodified	_VRKRAHLLT_					0	0	0			REV__PSAP-SGPL1|1|fusion	REV__PSAP-SGPL1|1|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	547.351274	1092.688	0.1982	0.00010849	1.9384	0.001061	2.1366	0.0011695	547.3522528689193	108.74	1.0877	108.52	108.22	109.31	-0.22498	0.027842	-0.00019429	NaN	10.866	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88899	+		62210	21168	51297	51346							0.14535928344980675
VRKRAHLLT	9	Unmodified	_VRKRAHLLT_					0	0	0			REV__PSAP-SGPL1|1|fusion	REV__PSAP-SGPL1|1|fusion	MULTI-MATCH	OvCa9_classI_Rep3	3		2	547.351274	1092.688	-0.6618	-0.00036223	2.8687	0.0015702	2.2069	0.001208	547.352777678496	109.6	1.3655	108.46	108.14	109.51	-1.1444	-0.035339	0.00082409	NaN	10.866	48	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93763	+		62211	21168	51297	51346							0.14535928344980675
VRKRDHGDS	9	Unmodified	_VRKRDHGDS_					0	0	0			REV__ENST00000507394.1_1_4:100479199-100480495:-|nuORF	REV__ENST00000507394.1_1_4:100479199-100480495:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.3084106445312	2	535.278503	1068.54245	-0.86302	-0.00046196	-3.2602	-0.0017451	-4.1232	-0.0022071	535.276680977112	49.79	0.4382	49.79	49.593	50.031	0					21	9	3	0	0	0	0.027462	1	3752	3752		44.117	9.9443	1	728440	+		62212	19958	51298	51347	68295	68295					0.010924207581410883
VRKRPYKWKEL	11	Unmodified	_VRKRPYKWKEL_					0	0	0			REV__ENST00000605834.1_1_4:185396718-185397009:+|nuORF	REV__ENST00000605834.1_1_4:185396718-185397009:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.63446044921875	3	501.636661	1501.88815	-6.934	-0.0034783	3.0032	0.0015065	-3.9308	-0.0019718	501.6380201941158	164.12	0.35674	162.49	162.25	162.61	-1.6336					13	7	2	0	0	0	0.72545	1	16204	16204		9.6461	3.9474	1	168490	+		62213	28070	51299	51348	68296	68296					0.15728358221917915
VRKRVDQLH	9	Unmodified	_VRKRVDQLH_					0	0	0			REV__nc|ENSG00000168610|P40763-3|STAT3	REV__nc|ENSG00000168610|P40763-3|STAT3	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8424072265625	2	575.843813	1149.67307	-2.8608	-0.0016474	1.7444	0.0010045	-1.1164	-0.00064289	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.55588	2	14720	14500;14720		37.159	5.6293	1	356230	+		62214	21386	51300	51349	68297;68298	68298					0.10422436476983421
VRLAVPLFG	9	Unmodified	_VRLAVPLFG_					0	0	0			REV__ENST00000315691.7_1_3:143690972-143691332:+|nuORF	REV__ENST00000315691.7_1_3:143690972-143691332:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	486.3050842285156	2	486.30547	970.596387	-1.0237	-0.00049782	0.68907	0.0003351	-0.3346	-0.00016272	486.3057082440577	120.4	1.6293	120.23	119.94	121.57	-0.17138					88	32	4	0	0	0	0.69895	1	11665	11665		18.324	0	1	594410	+		62215	24399	51301	51350	68299	68299					0.10991244927799926
VRLFVGYKN	9	Unmodified	_VRLFVGYKN_					0	0	0			REV__ENSG00000146676|ENST00000395699|PURB	REV__ENSG00000146676|ENST00000395699|PURB	MULTI-MSMS	OvCa9_classI_Rep4_	4	548.3175659179688	2	548.319109	1094.62366	-0.12306	-6.7474E-05	-4.4018	-0.0024136	-4.5248	-0.002481	548.3165681470533	75.391	2.0204	72.16	71.192	73.213	-3.2308					95	41	4	0	0	0	0.61208	1	5961	5961		30.504	2.6214	1	1571700	+		62216	20026	51302	51351	68300	68300					0.0801372846817685
VRLGIPRN	8	Unmodified	_VRLGIPRN_					0	0	0			REV__ENST00000226230.7_1_17:26653793-26654375:+|nuORF	REV__ENST00000226230.7_1_17:26653793-26654375:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.7906188964844	2	462.790518	923.566484	0.27277	0.00012624	-0.18065	-8.3604E-05	0.092117	4.2631E-05	462.7903124837854	33.565	1.4882	30.777	30.259	31.747	-2.7881					68	29	3	0	0	0	0.74971	1	933	933		26.796	2.5934	1	162630	+		62217	23769	51303	51352	68301	68301					0.1016430598245961
VRLGLGLSLA	10	Unmodified	_VRLGLGLSLA_					0	0	0			REV__ENSG00000187905|ENST00000442047|LRRC74B	REV__ENSG00000187905|ENST00000442047|LRRC74B	MULTI-MSMS	OvCa99_classI_Rep5	1	499.8214111328125	2	499.821484	997.628415	1.383	0.00069124	0.81656	0.00040813	2.1995	0.0010994	499.82190914888116	109.91	0.67438	109.91	109.55	110.22	0					58	14	5	0	0	0	0.52439	1	12462	12462		51.193	3.5354	1	1166100	+		62218	22674	51304	51353	68302	68302					0.1295061261093906
VRLGRAAPLK	10	Unmodified	_VRLGRAAPLK_					0	0	0		ENST00000333554.4_9:40307429-40337427:+|nuORF	ENST00000333554.4_9:40307429-40337427:+|nuORF	ENST00000333554.4_9:40307429-40337427:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	540.8533325195312	2	540.85365	1079.69275	-0.39062	-0.00021127	-0.0042362	-2.2912E-06	-0.39485	-0.00021356	540.8535269796657	39.129	0.49304	39.129	38.927	39.42	0					28	10	4	0	0	0	0.65434	1	2280	2280		35.618	6.4687	1	593970			62219	10469	51305	51354	68303	68303					0.1560881248772148
VRLIPCFPD	9	Unmodified	_VRLIPCFPD_					0	0	0			REV__ENSG00000109991|ENST00000263314|P2RX3	REV__ENSG00000109991|ENST00000263314|P2RX3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.3351440429688	2	530.28642	1058.55829	-1.4783	-0.00078395	-1.1616	-0.00061601	-2.64	-0.0014	530.2855683262807	124.08	0.54743	122.69	122.42	122.97	-1.3908					17	10	2	0	0	0	0.027462	1	11731	11731		30.504	8.5438	1	25346	+		62220	17962	51306	51355	68304	68304					0.03134990950820793
VRLIPCFPD	9	Unmodified	_VRLIPCFPD_					0	0	0			REV__ENSG00000109991|ENST00000263314|P2RX3	REV__ENSG00000109991|ENST00000263314|P2RX3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.28642	1058.55829	-0.8484	-0.00044989	-1.3319	-0.00070627	-2.1803	-0.0011562	530.2865615496951	122.85	0.49351	122.64	122.36	122.86	-0.21803	-0.065365	0.00082131	NaN	44.117	16	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16776	+		62221	17962	51306	51355							0.03134990950820793
VRLIPCFPD	9	Unmodified	_VRLIPCFPD_					0	0	0			REV__ENSG00000109991|ENST00000263314|P2RX3	REV__ENSG00000109991|ENST00000263314|P2RX3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	530.28642	1058.55829	1.4286	0.00075758	-3.8674	-0.0020508	-2.4387	-0.0012932	530.2845397540569	123.81	0.67226	122.77	122.51	123.18	-1.0377	0.073749	-0.0018678	NaN	44.117	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24586	+		62222	17962	51306	51355							0.03134990950820793
VRLISTVAFT	10	Unmodified	_VRLISTVAFT_					0	0	0			REV__nc|ENSG00000211895|P01876-1|IGHA1	REV__nc|ENSG00000211895|P01876-1|IGHA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8306884765625	2	553.832049	1105.64954	0.13277	7.3535E-05	-3.4573	-0.0019148	-3.3245	-0.0018412	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.74374	1	13955	13955		25.574	0	1	400120	+		62223	29124	51307	51356	68305	68305					0.10094577919812764
VRLLFQRVH	9	Unmodified	_VRLLFQRVH_					0	0	0		ENST00000392238.2_1_2:203590973-203620291:+|nuORF	ENST00000392238.2_1_2:203590973-203620291:+|nuORF	ENST00000392238.2_1_2:203590973-203620291:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3548583984375	2	584.359099	1166.70365	-2.312	-0.0013511	-2.2933	-0.0013401	-4.6053	-0.0026912	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.69895	1	14532	14532		18.324	1.8513	1	180810			62224	11214	51308	51357	68306	68306					0.1269621486203505
VRLLFYLI	8	Unmodified	_VRLLFYLI_					0	0	0			REV__ENSG00000187554|ENST00000642603|TLR5	REV__ENSG00000187554|ENST00000642603|TLR5	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.2764282226562	2	518.83132	1035.64809	-0.38797	-0.00020129	-4.036	-0.002094	-4.424	-0.0022953	518.8291458724062	116.8	0.94087	115.76	115.44	116.38	-1.0414					33	18	2	0	0	0	0.028476	1	8809	8809		35.201	6.9464	1	60160	+		62225	22645	51309	51358	68307	68307					0.1316898862171456
VRLLLLLLFF	10	Unmodified	_VRLLLLLLFF_					0	0	0			REV__ENST00000453168.5_1_3:31574350-31574467:+|nuORF	REV__ENST00000453168.5_1_3:31574350-31574467:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	623.918212890625	2	623.917927	1245.8213	-6.0051	-0.0037467	4.0143	0.0025046	-1.9909	-0.0012421	623.9202937363024	164.58	0.86269	163.17	162.86	163.73	-1.4083					55	31	2	0	0	0	0.94667	1	14359	14359		3.41	0.25078	1	34551	+		62226	25991	51310	51359	68308	68308					0.2082235467812552
VRLPCAVLR	9	Unmodified	_VRLPCAVLR_					0	0	0		ENSG00000130193|ENST00000336138|THEM6	ENSG00000130193|ENST00000336138|THEM6	ENSG00000130193|ENST00000336138|THEM6	MULTI-MSMS	OvCa9_classI_Rep2	2	513.8151245117188	2	513.815679	1025.6168	-0.4504	-0.00023142	-0.61319	-0.00031507	-1.0636	-0.00054649	513.8152848157494	74.741	2.4404	72.77	72.324	74.764	-1.9711					110	46	3	0	0	0	0.38529	2	6136	6124;6136		53.351	0	1	2623500			62227	3966	51311	51360	68309;68310	68310					0.10502092315959999
VRLPCAVLR	9	Unmodified	_VRLPCAVLR_					0	0	0		ENSG00000130193|ENST00000336138|THEM6	ENSG00000130193|ENST00000336138|THEM6	ENSG00000130193|ENST00000336138|THEM6	MULTI-MSMS	OvCa9_classI_Rep4_	4	513.8165283203125	2	513.815679	1025.6168	-0.22749	-0.00011689	-0.77517	-0.00039829	-1.0027	-0.00051518	513.8151298922651	75.964	2.6418	73.025	72.401	75.043	-2.9389					148	54	4	0	0	0	0.48324	1	6020	6020		44.117	0	1	2672000			62228	3966	51311	51360	68311	68311					0.10502092315959999
VRLPRGAS	8	Unmodified	_VRLPRGAS_					0	0	0			REV__ENST00000277462.9_1_9:130887138-130890631:-|nuORF	REV__ENST00000277462.9_1_9:130887138-130890631:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	428.26171875	2	428.261594	854.508634	-0.2241	-9.5974E-05	0.26636	0.00011407	0.042257	1.8097E-05	428.2616025856162	144.91	1.2947	143.47	143.1	144.39	-1.4357					70	24	4	0	0	0	0.75241	1	14249	14249		25.45	1.2474	1	398580	+		62229	24102	51312	51361	68312	68312					0.0755604405703707
VRLRPLQLR	9	Unmodified	_VRLRPLQLR_					0	0	0			REV__ENSG00000105227|ENST00000324001|PRX	REV__ENSG00000105227|ENST00000324001|PRX	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8809814453125	2	575.880199	1149.74584	2.6187	0.0015081	-0.52451	-0.00030205	2.0942	0.001206	575.8797536026407	130.77	1.5941	129.29	128.86	130.45	-1.4779					88	32	4	0	0	0	0.53957	1	12550	12550		38.806	0	1	237440	+		62230	17706	51313	51362	68313	68313					0.1769619027038516
VRLRTRLL	8	Unmodified	_VRLRTRLL_					0	0	0			REV__ENST00000305544.8_1_3:49168389-49168452:-|nuORF	REV__ENST00000305544.8_1_3:49168389-49168452:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	513.8154296875	2	513.848368	1025.68218	-0.44043	-0.00022632	2.7503	0.0014132	2.3099	0.0011869	513.848515973574	74.754	0.31142	72.783	72.586	72.898	-1.9711					7	5	2	0	0	0	0.028476	1	6130	6130		15.642	0	1	8136	+		62231	24283	51314	51363	68314	68314					0.17036829833318734
VRLSGQRCNI	10	Unmodified	_VRLSGQRCNI_					0	0	0		nc|ENSG00000211452|P49895-7|DIO1;nc|ENSG00000211452|P49895-5|DIO1;nc|ENSG00000211452|P49895-4|DIO1;ENSG00000211452|ENST00000361921|DIO1	nc|ENSG00000211452|P49895-7|DIO1	nc|ENSG00000211452|P49895-7|DIO1	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.7866821289062	2	573.314032	1144.61351	0.80057	0.00045898	1.7911	0.0010268	2.5916	0.0014858	573.3147235876822	151.03	0.35165	151.03	150.79	151.15	0					9	6	2	0	0	0	0.027028	1	17689	17689		24.519	3.5723	1	27546			62232	9106	51315	51364	68315	68315					0.04698797471291982
VRLTTSPSLLW	11	Unmodified	_VRLTTSPSLLW_					0	0	0			REV__ENSG00000117115|ENST00000375486|PADI2	REV__ENSG00000117115|ENST00000375486|PADI2	MULTI-MSMS	OvCa9_classI_Rep4_	4	636.8688354492188	2	636.869163	1271.72377	0.45389	0.00028907	-3.4886	-0.0022218	-3.0347	-0.0019327	636.8669245795504	64.335	1.2624	60.86	60.588	61.851	-3.475					67	25	4	0	0	0	0.56391	1	4577	4577		47.96	14.038	1	784720	+		62233	18337	51316	51365	68316	68316					0.0987792101134346
VRLTTSPSLLW	11	Unmodified	_VRLTTSPSLLW_					0	0	0			REV__ENSG00000117115|ENST00000375486|PADI2	REV__ENSG00000117115|ENST00000375486|PADI2	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	636.869163	1271.72377	0.45389	0.00028907	-3.4886	-0.0022218	-3.0347	-0.0019327	636.8669245795504	64.335	1.2624	60.86	60.588	61.851	-3.475	0.098566	-0.0021706	NaN	47.96	67	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	784720	+		62234	18337	51316	51365							0.0987792101134346
VRLVRSNEP	9	Unmodified	_VRLVRSNEP_					0	0	0			REV__ENSG00000132591|ENST00000254928|ERAL1	REV__ENSG00000132591|ENST00000254928|ERAL1	MULTI-MSMS	OvCa99_classI_Rep5	1	535.3084106445312	2	535.309272	1068.60399	-0.84804	-0.00045397	1.5268	0.00081731	0.67876	0.00036335	535.3094316818523	49.835	0.73795	49.835	49.55	50.288	0					37	16	3	0	0	0	0.44568	1	3752	3752		47.657	0	1	1320300	+		62235	19089	51317	51366	68317	68317					0.07243352457408037
VRLVRSNEP	9	Unmodified	_VRLVRSNEP_					0	0	0			REV__ENSG00000132591|ENST00000254928|ERAL1	REV__ENSG00000132591|ENST00000254928|ERAL1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	535.309272	1068.60399	-0.84804	-0.00045397	1.5268	0.00081731	0.67876	0.00036335	535.3094316818523	49.835	0.73795	49.835	49.55	50.288	0	0	0	NaN	47.657	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1320300	+		62236	19089	51317	51366							0.07243352457408037
VRLWRGSESR	10	Unmodified	_VRLWRGSESR_					0	0	0		nc|ENSG00000167614|Q9H313-5|TTYH1	nc|ENSG00000167614|Q9H313-5|TTYH1	nc|ENSG00000167614|Q9H313-5|TTYH1	MULTI-MSMS	OvCa99_classI_Rep5	1	415.9006042480469	3	415.898544	1244.6738	0.56947	0.00023684	1.6187	0.00067323	2.1882	0.00091007	415.8994143883985	30.582	1.1758	30.582	30.334	31.509	0					59	23	5	0	0	0	0.64697	1	1178	1178		27.644	0	1	3408400			62237	15160	51318	51367	68318	68318					0.061252311260204806
VRMHIKLASL	10	Unmodified	_VRMHIKLASL_					0	0	0			REV__nc|ENSG00000130803|Q96PQ6-3|ZNF317	REV__nc|ENSG00000130803|Q96PQ6-3|ZNF317	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3554077148438	2	584.355168	1166.69578	-1.7162	-0.0010029	3.9032	0.0022809	2.187	0.001278	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.6349	2	14326	14212;14326		37.812	7.3079	1	833330	+		62238	18972	51319	51368	68319;68320	68320					0.1191031955024755
VRMSLMWLL	9	Unmodified	_VRMSLMWLL_					0	0	0		ENST00000428879.5_1_2:150436081-150438721:-|nuORF	ENST00000428879.5_1_2:150436081-150438721:-|nuORF	ENST00000428879.5_1_2:150436081-150438721:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.838623046875	2	574.819573	1147.62459	1.8247	0.0010489	-0.34602	-0.0001989	1.4787	0.00084999	574.8187206144913	82.128	0.37197	82.128	81.979	82.351	0					21	8	4	0	0	0	0.027462	1	8488	8488		51.335	3.4199	1	655550			62239	11776	51320	51369	68321	68321					0.056684835212308826
VRMVKLHDRL	10	Unmodified	_VRMVKLHDRL_					0	0	0			REV__ENSG00000171017|ENST00000306708|LRRC8E	REV__ENSG00000171017|ENST00000306708|LRRC8E	MULTI-MSMS	OvCa9_classI_Rep2	2	422.91925048828125	3	422.920291	1265.73905	-0.42407	-0.00017935	-2.6187	-0.0011075	-3.0428	-0.0012869	422.9191804294928	74.511	2.5984	72.54	72.114	74.713	-1.9711					157	49	5	0	0	0	0.60504	1	6132	6132		41.427	0	1	1026300	+		62240	21585	51321	51370	68322	68322					0.11680509327538857
VRMWKRQQQKW	11	Unmodified	_VRMWKRQQQKW_					0	0	0		nc|ENSG00000150687|O95084-2|PRSS23;ENSG00000150687|ENST00000280258|PRSS23	nc|ENSG00000150687|O95084-2|PRSS23	nc|ENSG00000150687|O95084-2|PRSS23	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.7938232421875	3	525.289266	1572.84597	-1.0516	-0.00055241	1.4932	0.00078436	0.44157	0.00023195	525.2900416507516	34.998	0.42812	34.998	34.818	35.246	0					20	8	3	0	0	0	0.026488	1	1710	1710		6.3209	0	1	264090			62241	5515	51322	51371	68323	68323					0.08246059541897921
VRNGHIKRI	9	Unmodified	_VRNGHIKRI_					0	0	0		ENST00000567660.1_1_16:58150774-58163019:-|nuORF;ENST00000567092.1_1_16:58149929-58163019:-|nuORF;ENST00000562622.5_1_16:58149118-58163019:-|nuORF;ENSG00000070761|ENST00000262498|CFAP20	ENST00000567660.1_1_16:58150774-58163019:-|nuORF	ENST00000567660.1_1_16:58150774-58163019:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	546.8409423828125	2	546.841074	1091.66759	-1.1229	-0.00061405	0.72652	0.00039729	-0.39638	-0.00021676	546.841395262819	27.666	0.55004	27.666	27.491	28.041	0					29	10	5	0	0	0	0.29717	1	838	838		63.306	7.8021	1	570580			62242	1435	51323	51372	68324	68324					0.12542757685173456
VRNIKATDLRP	11	Unmodified	_VRNIKATDLRP_					0	0	0		ENST00000498115.1_1_1:228334565-228335341:+|nuORF;ENST00000464858.5_1_1:228333604-228336395:+|nuORF;nc|ENSG00000143774|Q16774|GUK1;ENST00000486668.5_1_1:228333307-228336550:+|nuORF;ENST00000492871.5_1_1:228328930-228336395:+|nuORF;ENSG00000143774|ENST00000453943|GUK1;ENST00000465025.1_1_1:228335125-228336550:+|nuORF;ENST00000485838.5_1_1:228327993-228336550:+|nuORF;nc|ENSG00000143774|Q16774-3|GUK1	ENST00000498115.1_1_1:228334565-228335341:+|nuORF	ENST00000498115.1_1_1:228334565-228335341:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8826904296875	2	641.883136	1281.75172	-5.3554	-0.0034376	4.4876	0.0028805	-0.86781	-0.00055703	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.72511	1	13281	13281		14.137	0.68308	1	804890			62243	12820	51324	51373	68325	68325					0.12211243991396259
VRNIRLRLEN	10	Unmodified	_VRNIRLRLEN_					0	0	0		nc|ENSG00000151914|Q03001|DST;ENSG00000151914|ENST00000680361|DST;nc|ENSG00000151914|Q03001-8|DST;nc|ENSG00000151914|Q03001-14|DST;DST|p.E3356Afs*12|1|0.31|ENSG00000151914|chr6:56535225-56535226|-/CCAG|frameshift_variant;nc|ENSG00000151914|Q03001-9|DST;DST|p.A2546Pfs*8|1|0.39|ENSG00000151914|chr6:56560327-56560327|C/-|frameshift_variant;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001|DST;nc|ENSG00000151914|Q03001-3|DST	nc|ENSG00000151914|Q03001|DST	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8822631835938	2	641.888752	1281.76295	-5.3554	-0.0034376	-4.2627	-0.0027362	-9.6181	-0.0061737	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.62299	2	13098	13055;13098		39.253	13.679	1	804890			62244	5594;15096	51325	51374	68326;68327	68327					0.13334066085553786
VRNITKKSSHL	11	Unmodified	_VRNITKKSSHL_					0	0	0		ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8822631835938	2	641.883136	1281.75172	-4.7067	-0.0030211	3.8779	0.0024892	-0.82877	-0.00053197	641.8854486748878	156.42	0.77325	154.87	154.64	155.41	-1.545					50	23	3	0	0	0	0.72511	1	15492	15492		14.137	3.2716	1	27475			62245	6011	51326	51375	68328	68328					0.12211243991418996
VRNIVANRL	9	Unmodified	_VRNIVANRL_					0	0	0		ENSG00000151176|ENST00000280800|PLBD2;nc|ENSG00000151176|Q8NHP8-2|PLBD2;PLBD2|p.D510Afs*24|1|0.06|ENSG00000151176|chr12:113387833-113387833|A/-|frameshift_variant	ENSG00000151176|ENST00000280800|PLBD2	ENSG00000151176|ENST00000280800|PLBD2	MULTI-MSMS	OvCa99_classI_Rep5	1	527.8275146484375	2	527.827632	1053.64071	-0.61907	-0.00032676	0.15518	8.191E-05	-0.46389	-0.00024485	527.8276825936094	55.294	0.9499	55.294	55.023	55.973	0					53	22	4	0	0	0	0.18193	2	4506	4506;4538		79.451	22.73	1	8196100			62246	5539	51327	51376	68329;68330	68329					0.11603649073981614
VRNKIKMFA	9	Unmodified	_VRNKIKMFA_					0	0	0		RFC2|p.E293Kfs*20|1|0.1|ENSG00000049541|chr7:74235609-74235609|C/-|frameshift_variant;ENSG00000049541|ENST00000055077|RFC2	RFC2|p.E293Kfs*20|1|0.1|ENSG00000049541|chr7:74235609-74235609|C/-|frameshift_variant	RFC2|p.E293Kfs*20|1|0.1|ENSG00000049541|chr7:74235609-74235609|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8294677734375	2	553.828786	1105.64302	-0.8401	-0.00046527	2.9703	0.001645	2.1302	0.0011798	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.59983	1	14253	14253		31.955	1.4512	1	245610			62247	1171	51328	51377	68331	68331					0.09442361487435846
VRNLFEPKF	9	Unmodified	_VRNLFEPKF_					0	0	0			REV__tr|A0A7D7A537|A0A7D7A537_9CLOTChaperoneproteinClpBOS=ClostridiumintestinaleOX=36845GN=clpBPE=3SV=1	REV__tr|A0A7D7A537|A0A7D7A537_9CLOTChaperoneproteinClpBOS=ClostridiumintestinaleOX=36845GN=clpBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.7965087890625	2	575.324391	1148.63423	-0.51924	-0.00029873	3.3267	0.0019139	2.8074	0.0016152	575.3261354898017	51.591	1.7509	51.591	51.164	52.915	0					57	40	2	0	0	0	0.027462	1	4110	4110		36.447	5.9431	1	307950	+		62248	32625	51329	51378	68332	68332					0.06585711122602333
VRNLHIREL	9	Unmodified	_VRNLHIREL_					0	0	0		nc|ENSG00000146872|Q86UE8-3|TLK2;ENSG00000146872|ENST00000346027|TLK2;nc|ENSG00000146872|Q86UE8|TLK2;nc|ENSG00000198586|Q9UKI8-3|TLK1;nc|ENSG00000198586|Q9UKI8-4|TLK1;nc|ENSG00000198586|Q9UKI8-5|TLK1;ENSG00000198586|ENST00000431350|TLK1;nc|ENSG00000198586|Q9UKI8-2|TLK1;ENST00000456760.1_1_9:125449379-125449940:+|nuORF	nc|ENSG00000146872|Q86UE8-3|TLK2	nc|ENSG00000146872|Q86UE8-3|TLK2	MULTI-MSMS	OvCa99_classI_Rep5	1	575.3492431640625	2	575.346189	1148.67783	-0.29432	-0.00016933	-0.10661	-6.1339E-05	-0.40093	-0.00023067	575.3460951928828	52.47	0.48232	52.47	52.259	52.741	0					30	10	4	0	0	0	0.26076	1	4116	4116		67.494	16.301	1	1689900			62249	5315	51330	51379	68333	68333					0.10943320619753649
VRNLPNIREK	10	Unmodified	_VRNLPNIREK_					0	0	0		tr|A0A553SH36|A0A553SH36_NIACIuroporphyrinogen-IIIC-methyltransferaseOS=NialliacirculansOX=1397GN=cobAPE=3SV=1	tr|A0A553SH36|A0A553SH36_NIACIuroporphyrinogen-IIIC-methyltransferaseOS=NialliacirculansOX=1397GN=cobAPE=3SV=1	tr|A0A553SH36|A0A553SH36_NIACIuroporphyrinogen-IIIC-methyltransferaseOS=NialliacirculansOX=1397GN=cobAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8694458007812	2	619.870028	1237.7255	-3.8587	-0.0023919	2.9348	0.0018192	-0.92393	-0.00057272	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.69073	1	15206	15206		31.53	1.0262	1	492670			62250	33232	51331	51380	68334	68334					0.11614974819917734
VRNLPNIREK	10	Unmodified	_VRNLPNIREK_					0	0	0		tr|A0A553SH36|A0A553SH36_NIACIuroporphyrinogen-IIIC-methyltransferaseOS=NialliacirculansOX=1397GN=cobAPE=3SV=1	tr|A0A553SH36|A0A553SH36_NIACIuroporphyrinogen-IIIC-methyltransferaseOS=NialliacirculansOX=1397GN=cobAPE=3SV=1	tr|A0A553SH36|A0A553SH36_NIACIuroporphyrinogen-IIIC-methyltransferaseOS=NialliacirculansOX=1397GN=cobAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8694458007812	2	619.870028	1237.7255	-3.6059	-0.0022352	2.5915	0.0016064	-1.0145	-0.00062885	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.71173	1	12713	12713		29.17	5.6474	1	664560			62251	33232	51331	51380	68335	68335					0.11614974819917734
VRNLPNIREK	10	Unmodified	_VRNLPNIREK_					0	0	0		tr|A0A553SH36|A0A553SH36_NIACIuroporphyrinogen-IIIC-methyltransferaseOS=NialliacirculansOX=1397GN=cobAPE=3SV=1	tr|A0A553SH36|A0A553SH36_NIACIuroporphyrinogen-IIIC-methyltransferaseOS=NialliacirculansOX=1397GN=cobAPE=3SV=1	tr|A0A553SH36|A0A553SH36_NIACIuroporphyrinogen-IIIC-methyltransferaseOS=NialliacirculansOX=1397GN=cobAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8684692382812	2	619.870028	1237.7255	-3.1194	-0.0019336	2.0434	0.0012667	-1.076	-0.00066696	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.75313	1	14874	14874		24.519	1.9395	1	806750			62252	33232	51331	51380	68336	68336					0.11614974819917734
VRNLPQYV	8	Unmodified	_VRNLPQYV_					0	0	0		ENSG00000147140|ENST00000276079|NONO;ENST00000471419.6_1_X:70511819-70517312:+|nuORF;nc|ENSG00000147140|Q15233-2|NONO	ENSG00000147140|ENST00000276079|NONO	ENSG00000147140|ENST00000276079|NONO	MULTI-MSMS	OvCa99_classI_Rep5	1	494.7835388183594	2	494.782359	987.550165	0.36526	0.00018072	-0.55979	-0.00027697	-0.19453	-9.625E-05	494.78207689146615	72.316	0.95361	72.316	72	72.954	0					58	23	3	0	0	0	0.39692	2	7048	7019;7048		88.643	29.915	1	21033000			62253	5334	51332	51381	68337;68338	68338					0.05589180025708629
VRNLRPQDS	9	Unmodified	_VRNLRPQDS_					0	0	0		ENSG00000154358|ENST00000680850|OBSCN;OBSCN|p.P6706Tfs*18|1|0.25|ENSG00000154358|chr1:228370088-228370089|-/GA|frameshift_variant;nc|ENSG00000154358|Q5VST9|OBSCN;nc|ENSG00000154358|Q5VST9-2|OBSCN;nc|ENSG00000154358|Q5VST9-6|OBSCN;OBSCN|p.G3435Vfs*25|1|0.11|ENSG00000154358|chr1:228288852-228288853|-/T|frameshift_variant;OBSCN|p.E3436Rfs*24|1|0.11|ENSG00000154358|chr1:228288854-228288855|-/A|frameshift_variant;nc|ENSG00000154358|Q5VST9-5|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN	ENSG00000154358|ENST00000680850|OBSCN;nc|ENSG00000154358|Q5VST9-3|OBSCN	ENSG00000154358|ENST00000680850|OBSCN	MULTI-MSMS	OvCa9_classI_Rep3	3	542.7970581054688	2	542.796529	1083.5785	-2.5657	-0.0013927	4.0753	0.002212	1.5095	0.00081938	542.7985901751956	143.31	1.137	142.32	141.94	143.08	-0.9903					51	22	3	0	0	0	0.56889	1	11918	11918		35.618	1.4457	1	119450			62254	5731;15107	51333	51382	68339	68339					0.04005877934991986
VRNNHYNL	8	Unmodified	_VRNNHYNL_					0	0	0			REV__FRMD6|p.F6Y|1|0.26|ENSG00000139926|chr14:51689853-51689853|T/A|missense_variant	REV__FRMD6|p.F6Y|1|0.26|ENSG00000139926|chr14:51689853-51689853|T/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.3355102539062	2	515.264865	1028.51518	1.7118	0.00088205	-0.37407	-0.00019275	1.3378	0.0006893	515.2645239610002	78.654	0.62245	78.654	78.415	79.037	0					25	14	3	0	0	0	0.028476	1	8016	8016		42.474	14.592	1	690820	+		62255	28143	51334	51383	68340	68340					0.0020593721774275764
VRNPKILLL	9	Unmodified	_VRNPKILLL_					0	0	0		nc|ENSG00000005471|P21439-3|ABCB4;ENSG00000005471|ENST00000649586|ABCB4;nc|ENSG00000005471|P21439|ABCB4;nc|ENSG00000085563|P08183-2|ABCB1;ENSG00000085563|ENST00000622132|ABCB1	nc|ENSG00000005471|P21439-3|ABCB4;nc|ENSG00000085563|P08183-2|ABCB1	nc|ENSG00000085563|P08183-2|ABCB1	MULTI-MSMS	OvCa99_classI_Rep5	1	533.362060546875	2	533.360776	1064.707	2.4911	0.0013286	-0.44968	-0.00023984	2.0414	0.0010888	533.3603221989509	84.499	0.62077	84.499	84.261	84.882	0					37	14	3	0	0	0	0.18193	1	8834	8834		79.451	0	1	1533300			62256	1734;855	51335	51384	68341	68341					0.17723464916048215
VRNPSVVVKRG	11	Unmodified	_VRNPSVVVKRG_					0	0	0		ENSG00000163359|ENST00000295550|COL6A3;nc|ENSG00000163359|P12111-2|COL6A3;nc|ENSG00000163359|P12111-4|COL6A3;nc|ENSG00000163359|P12111-5|COL6A3;nc|ENSG00000163359|P12111-3|COL6A3;COL6A3|p.T1393Cfs*9|1|0.09|ENSG00000163359|chr2:237371828-237371840|GCTCCCGGAAGGT/-|frameshift_variant	ENSG00000163359|ENST00000295550|COL6A3	ENSG00000163359|ENST00000295550|COL6A3	MULTI-MSMS	OvCa9_classI_Rep3	3	605.871337890625	2	605.872571	1209.73059	-4.4328	-0.0026857	3.4628	0.002098	-0.96995	-0.00058766	605.8745511795182	157.17	1.2501	156	155.65	156.91	-1.1707					83	31	4	0	0	0	0.71789	1	13533	13533		23.523	0.94304	1	204530			62257	6293	51336	51385	68342	68342					0.13411278682542616
VRNRLILFH	9	Unmodified	_VRNRLILFH_					0	0	0		ENST00000389045.7_1_2:230672980-230673052:-|nuORF	ENST00000389045.7_1_2:230672980-230673052:-|nuORF	ENST00000389045.7_1_2:230672980-230673052:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3569946289062	2	584.359099	1166.70365	-0.50329	-0.0002941	-3.7984	-0.0022196	-4.3017	-0.0025137	584.3567763295431	142.42	4.015	140.98	138.81	142.83	-1.4427					242	77	4	0	0	0	0.69895	1	13826	13826		18.324	2.6826	1	214670			62258	11194	51337	51386	68343	68343					0.1269621486203505
VRNRNLDQL	9	Unmodified	_VRNRNLDQL_					0	0	0			REV__ENSG00000251154|ENST00000509356|PTTG1IP2	REV__ENSG00000251154|ENST00000509356|PTTG1IP2	MULTI-MSMS	OvCa99_classI_Rep5	1	564.3202514648438	2	564.317628	1126.6207	1.4533	0.00082011	-2.345	-0.0013233	-0.89169	-0.00050319	564.3161299316579	155.86	1.9256	155.86	155.17	157.1	0					86	37	3	0	0	0	0.51865	1	18274	18274		40.778	1.5253	1	123060	+		62259	23497	51338	51387	68344	68344					0.06245853343375529
VRNRRIITVQ	10	Unmodified	_VRNRRIITVQ_					0	0	0		ENST00000579014.5_1_18:6942080-7042306:-|nuORF;ENSG00000101680|ENST00000389658|LAMA1	ENST00000579014.5_1_18:6942080-7042306:-|nuORF	ENST00000579014.5_1_18:6942080-7042306:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	627.88427734375	2	627.891295	1253.76804	-6.095	-0.003827	-3.6829	-0.0023125	-9.7779	-0.0061395	627.8888127520664	159.21	1.3634	157.94	157.66	159.03	-1.267					65	26	3	0	0	0	0.81208	1	13768	13768		17.468	1.8262	1	154460			62260	2196	51339	51388	68345	68345					0.15130369948178668
VRNTKKLHFL	10	Unmodified	_VRNTKKLHFL_					0	0	0			REV__ENST00000487535.5_1_22:42177428-42177578:+|nuORF	REV__ENST00000487535.5_1_22:42177428-42177578:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	628.3826904296875	2	628.385314	1254.75608	-4.0512	-0.0025457	-0.39444	-0.00024786	-4.4456	-0.0027935	628.3849132400738	150.53	4.7174	149.58	148	152.71	-0.95647					178	94	2	0	0	0	0.78463	1	12775	12775		20.947	0.95016	1	419100	+		62261	26603	51340	51389	68346	68346					0.13888753204969362
VRNVLNDAV	9	Unmodified	_VRNVLNDAV_					0	0	0		ENSG00000068885|ENST00000326448|IFT80;nc|ENSG00000068885|Q9P2H3-3|IFT80;nc|ENSG00000068885|Q9P2H3-2|IFT80	ENSG00000068885|ENST00000326448|IFT80	ENSG00000068885|ENST00000326448|IFT80	MULTI-MSMS	OvCa99_classI_Rep5	1	500.2837829589844	2	500.282723	998.550893	-0.14715	-7.3619E-05	-0.17726	-8.868E-05	-0.32441	-0.0001623	500.28260755079026	60.709	0.76369	60.709	60.392	61.156	0					35	17	3	0	0	0	0.44568	1	5304	5304		47.657	10.498	1	1692100			62262	1400	51341	51390	68347	68347					0.05155974674744357
VRNVNFKV	8	Unmodified	_VRNVNFKV_					0	0	0			REV__ENSG00000101361|ENST00000329276|NOP56	REV__ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	OvCa99_classI_Rep5	1	488.2884216308594	2	488.290351	974.566149	1.4635	0.00071461	-2.5291	-0.0012349	-1.0656	-0.00052034	488.2893873281165	83.663	0.50185	83.663	83.463	83.965	0					21	11	3	0	0	0	0.56113	1	8742	8742		71.378	0	1	327470	+		62263	17495	51342	51391	68348	68348					0.07784886262618329
VRPDEHDT	8	Unmodified	_VRPDEHDT_					0	0	0			REV__ENSG00000138615|ENST00000261883|CILP	REV__ENSG00000138615|ENST00000261883|CILP	MULTI-SECPEP	OvCa9_classI_Rep2	2	485.30780029296875	2	484.725238	967.435923	0.0097863	4.7437E-06	0.099562	4.826E-05	0.10935	5.3004E-05	484.72521544092575	107.1	1.1225	106.8	106.42	107.55	-0.30836					31	22	2	0	0	0	0.028476	1	10075	10075		24.203	14.018	1	19803	+		62264	19548	51343	51392	68349	68349					-0.049097545270569753
VRPDEHDT	8	Unmodified	_VRPDEHDT_					0	0	0			REV__ENSG00000138615|ENST00000261883|CILP	REV__ENSG00000138615|ENST00000261883|CILP	MULTI-MATCH	OvCa9_classI_Rep3	3		2	484.725238	967.435923	-0.11162	-5.4105E-05	0.54374	0.00026357	0.43212	0.00020946	484.72549382920846	107.83	0.84395	106.63	106.22	107.06	-1.1978	-0.080955	0.0003157	NaN	17.365	20	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19959	+		62265	19548	51343	51392							-0.049097545270569753
VRPDNTYEV	9	Unmodified	_VRPDNTYEV_					0	0	0		NFIX-CALR|1|fusion;NFIX-CALR|4|fusion;NFIX-CALR|2|fusion;ENSG00000179218|ENST00000316448|CALR	NFIX-CALR|1|fusion	NFIX-CALR|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	546.7717895507812	2	546.769645	1091.52474	0.030057	1.6434E-05	-0.12402	-6.7812E-05	-0.093966	-5.1378E-05	546.7693367562432	57.386	1.361	57.386	56.961	58.322	0					69	31	4	0	0	0	0.16264	2	4831	4806;4831		82.75	9.8239	1	3312700			62266	15428	51344	51393	68350;68351	68351					-0.01736339287390365
VRPFGVSLL	9	Unmodified	_VRPFGVSLL_					0	0	0		ENST00000433579.1_1_7:42952135-42964395:-|nuORF;ENST00000411875.1_1_7:42961455-42966220:-|nuORF;ENSG00000106588|ENST00000223321|PSMA2	ENST00000433579.1_1_7:42952135-42964395:-|nuORF	ENST00000433579.1_1_7:42952135-42964395:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	494.30047607421875	2	494.302927	986.591301	-3.5514	-0.0017554	-0.56102	-0.00027732	-4.1124	-0.0020328	494.3024982316327	153.87	1.3713	153.64	153.28	154.65	-0.22696					70	29	4	0	0	0	0.61208	1	15653	15653		30.504	2.6214	1	375650			62267	2563	51345	51394	68352	68352					0.09746941065202464
VRPGAVRGG	9	Unmodified	_VRPGAVRGG_					0	0	0			REV__ENST00000373930.3_1_9:123476433-123476640:-|nuORF	REV__ENST00000373930.3_1_9:123476433-123476640:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	434.7591247558594	2	434.759218	867.503883	-0.54476	-0.00023684	0.73073	0.00031769	0.18597	8.0851E-05	434.7594502813862	138.35	2.0585	138.12	137.54	139.6	-0.22697					104	41	4	0	0	0	0.59983	2	13882	13856;13882		31.955	5.1588	1	279250	+		62268	25053	51346	51395	68353;68354	68354					0.06483159914296266
VRPGCLVALHL	11	Unmodified	_VRPGCLVALHL_					0	0	0			REV__ENST00000505061.5_1_15:42105116-42107966:+|nuORF	REV__ENST00000505061.5_1_15:42105116-42107966:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3418579101562	2	589.347343	1176.68013	-5.1334	-0.0030254	-2.3752	-0.0013998	-7.5086	-0.0044252	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.70518	1	12476	12476		27.882	1.1893	1	589610	+		62269	26871	51347	51396	68355	68355					0.09886033033194508
VRPGILVLI	9	Unmodified	_VRPGILVLI_					0	0	0		ENST00000470840.5_1_9:131140285-131152010:+|nuORF;ENSG00000167118|ENST00000372853|URM1;nc|ENSG00000167118|Q9BTM9-2|URM1	ENST00000470840.5_1_9:131140285-131152010:+|nuORF	ENST00000470840.5_1_9:131140285-131152010:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	490.3384094238281	2	490.33677	978.658987	1.6135	0.00079114	0.42151	0.00020668	2.035	0.00099782	490.3368186446537	126.2	0.7929	126.2	125.85	126.65	0					37	16	3	0	0	0	0.36502	1	14583	14583		55.504	21.989	1	426570			62270	6759	51348	51397	68356	68356					0.16880390995981998
VRPGTALEL	9	Unmodified	_VRPGTALEL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OvCa9_classI_Rep2	2	478.28228759765625	2	478.282192	954.549831	0.23585	0.0001128	-0.47891	-0.00022905	-0.24306	-0.00011625	478.28189034540947	81.857	1.4017	80.209	79.767	81.169	-1.6485					51	26	3	0	0	0	0.37135	2	6947	6947;6963		54.776	3.4409	1	1372200			62271	1949	51349	51398	68357;68358	68357					0.07073760305831911
VRPGTALEL	9	Unmodified	_VRPGTALEL_					0	0	0		ENSG00000096696|ENST00000379802|DSP;nc|ENSG00000096696|P15924-3|DSP;nc|ENSG00000096696|P15924-2|DSP	ENSG00000096696|ENST00000379802|DSP	ENSG00000096696|ENST00000379802|DSP	MULTI-MSMS	OvCa9_classI_Rep3	3	478.28314208984375	2	478.282192	954.549831	-0.36164	-0.00017297	0.070446	3.3693E-05	-0.2912	-0.00013927	478.2821985086724	82.255	1.548	79.959	79.484	81.032	-2.2963					58	30	3	0	0	0	0.37135	2	4638	4638;4652		54.776	2.4771	1	2863700			62272	1949	51349	51398	68359;68360	68359					0.07073760305831911
VRPKKTTTT	9	Unmodified	_VRPKKTTTT_					0	0	0			REV__ENSG00000173402|ENST00000308775|DAG1	REV__ENSG00000173402|ENST00000308775|DAG1	MULTI-MSMS	OvCa99_classI_Rep5	1	516.3148803710938	2	516.314023	1030.61349	0.22946	0.00011847	-0.17742	-9.1602E-05	0.052046	2.6872E-05	516.3138686677379	161.44	1.3688	161.44	161.11	162.48	0					57	26	4	0	0	0	0.63422	1	18936	18936		27.882	5.9224	1	928880	+		62273	21769	51350	51399	68361	68361					0.09941120742928433
VRPKKTTTT	9	Unmodified	_VRPKKTTTT_					0	0	0			REV__ENSG00000173402|ENST00000308775|DAG1	REV__ENSG00000173402|ENST00000308775|DAG1	MULTI-MSMS	OvCa9_classI_Rep2	2	516.3135375976562	2	516.314023	1030.61349	-4.2539	-0.0021964	4.0398	0.0020858	-0.21417	-0.00011058	516.3160035152533	156.4	1.1562	156.18	155.89	157.05	-0.22696					77	28	5	0	0	0	0.64427	1	15908	15908		26.693	2.4902	1	397210	+		62274	21769	51350	51399	68362	68362					0.09941120742928433
VRPKVTVLN	9	Unmodified	_VRPKVTVLN_					0	0	0		ABCA1-PRR5L|2|fusion;ABCA1-PRR5L|3|fusion;nc|ENSG00000135362|Q6MZQ0-2|PRR5L;ENST00000530627.1_1_11:36476971-36484283:+|nuORF;nc|ENSG00000135362|Q6MZQ0-3|PRR5L;ENST00000389693.3_1_11:36397601-36484283:+|nuORF;ENSG00000135362|ENST00000530639|PRR5L	ABCA1-PRR5L|2|fusion	ABCA1-PRR5L|2|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.3126220703125	2	513.326934	1024.63931	-0.21821	-0.00011201	4.2868	0.0022005	4.0685	0.0020885	513.3293067022638	104.99	0.26308	104.99	104.87	105.13	0					6	5	2	0	0	0	0.027181	1	11782	11782		118.74	59.961	1	52178			62275	2	51351	51400	68363	68363					0.12798014985241934
VRPKVVRSV	9	Unmodified	_VRPKVVRSV_					0	0	0		nc|ENSG00000112118|P25205-2|MCM3;ENSG00000112118|ENST00000596288|MCM3	nc|ENSG00000112118|P25205-2|MCM3	nc|ENSG00000112118|P25205-2|MCM3	MULTI-MSMS	OvCa99_classI_Rep5	1	520.3401489257812	2	520.340375	1038.6662	-0.80866	-0.00042078	0.78781	0.00040993	-0.020846	-1.0847E-05	520.3404756594358	35.407	0.69477	35.407	35.198	35.892	0					25	14	3	0	0	0	0.33652	1	1789	1789		58.782	5.4305	1	467600			62276	2877	51352	51401	68364	68364					0.14841123596420402
VRPLARIWVE	10	Unmodified	_VRPLARIWVE_					0	0	0			REV__chr14:94062621-94065779|133|19.53|0.06|8.3|-|1|TE_info:L1PB1,L1PB1_dup11175,L1,LINE,donor,+,94065779,94071367|DDX24,None|113	REV__chr14:94062621-94065779|133|19.53|0.06|8.3|-|1|TE_info:L1PB1,L1PB1_dup11175,L1,LINE,donor,+,94065779,94071367|DDX24,None|113	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8685302734375	2	619.87204	1237.72953	-3.6059	-0.0022352	-0.65337	-0.00040501	-4.2593	-0.0026402	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.67931	1	12876	12876		32.812	1.2826	1	664560	+		62277	15912	51353	51402	68365	68365					0.1201706431365892
VRPPLEVSLP	10	Unmodified	_VRPPLEVSLP_					0	0	0		chr12:53939642-53945000|94|10.98|0.62|4.14|+|1|HOXC13,HOXC13|1	chr12:53939642-53945000|94|10.98|0.62|4.14|+|1|HOXC13,HOXC13|1	chr12:53939642-53945000|94|10.98|0.62|4.14|+|1|HOXC13,HOXC13|1	MULTI-MSMS	OvCa9_classI_Rep3	3	553.829345703125	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.72319	1	11983	11983		27.882	0	1	308210			62278	320	51354	51403	68366	68366					0.10094577919812764
VRPPLIIF	8	Unmodified	_VRPPLIIF_					0	0	0		ENSG00000136960|ENST00000075322|ENPP2;nc|ENSG00000136960|Q13822-3|ENPP2;nc|ENSG00000136960|Q13822-2|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	MULTI-MSMS	OvCa9_classI_Rep2	2	477.8091735839844	2	477.810388	953.606223	0.21295	0.00010175	-0.50532	-0.00024145	-0.29237	-0.0001397	477.8099772174769	124.62	1.9274	124.39	124.03	125.95	-0.23193					69	38	3	0	0	0	0.65582	6	12105	12105;12111;12117;12141;12150;12155		52.299	15.271	1	226270			62279	4544	51355	51404	68367;68368;68369;68370;68371;68372	68367					0.12756432933178985
VRPPLIIF	8	Unmodified	_VRPPLIIF_					0	0	0		ENSG00000136960|ENST00000075322|ENPP2;nc|ENSG00000136960|Q13822-3|ENPP2;nc|ENSG00000136960|Q13822-2|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	MULTI-MSMS	OvCa9_classI_Rep3	3	477.80963134765625	2	477.810388	953.606223	2.0965	0.0010017	-2.3672	-0.0011311	-0.27065	-0.00012932	477.8090798382224	125.72	1.4063	124.66	124.26	125.67	-1.0519					71	26	4	0	0	0	0.60486	6	9797	9776;9778;9784;9790;9797;9803		62.978	11.643	1	261640			62280	4544	51355	51404	68373;68374;68375;68376;68377;68378	68377					0.12756432933178985
VRPPLIIF	8	Unmodified	_VRPPLIIF_					0	0	0		ENSG00000136960|ENST00000075322|ENPP2;nc|ENSG00000136960|Q13822-3|ENPP2;nc|ENSG00000136960|Q13822-2|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	ENSG00000136960|ENST00000075322|ENPP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	477.8085632324219	2	477.810388	953.606223	-2.081	-0.00099433	1.8907	0.0009034	-0.19032	-9.0937E-05	477.811120273045	126.06	1.4727	124.64	124.29	125.76	-1.4143					72	29	4	0	0	0	0.68312	6	12024	11977;11987;11999;12012;12024;12044		46.766	7.5026	1	258230			62281	4544	51355	51404	68379;68380;68381;68382;68383;68384	68383					0.12756432933178985
VRPPPSPQV	9	Unmodified	_VRPPPSPQV_					0	0	0			REV__ENST00000331595.8_1_X:152773909-152774230:+|nuORF	REV__ENST00000331595.8_1_X:152773909-152774230:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.24932861328125	2	488.782359	975.550165	-0.60403	-0.00029524	0.12166	5.9467E-05	-0.48237	-0.00023577	488.7822066849101	54.887	1.7202	54.887	54.253	55.973	0					88	40	3	0	0	0	0.027425	1	4483	4483		60.118	0	1	903120	+		62282	24538	51356	51405	68385	68385					0.06141180025713311
VRPPVQVY	8	Unmodified	_VRPPVQVY_					0	0	0		ENST00000495005.5_1_21:35281377-35288052:-|nuORF;ENST00000491703.5_1_21:35279611-35286837:-|nuORF;ENSG00000241837|ENST00000290299|ATP5PO	ENST00000495005.5_1_21:35281377-35288052:-|nuORF	ENST00000495005.5_1_21:35281377-35288052:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	479.28021240234375	2	479.279452	956.544351	-0.20774	-9.9564E-05	-0.33461	-0.00016037	-0.54235	-0.00025994	479.27924233209876	75.562	2.3444	73.152	72.488	74.832	-2.4106					136	45	4	0	0	0	0.39692	9	3830	3812;3817;3823;3830;3835;3841;3847;3853;3860		88.643	40.986	1	1295000			62283	9355	51357	51406	68386;68387;68388;68389;68390;68391;68392;68393;68394	68389					0.0643408151404401
VRPPVQVY	8	Unmodified	_VRPPVQVY_					0	0	0		ENST00000495005.5_1_21:35281377-35288052:-|nuORF;ENST00000491703.5_1_21:35279611-35286837:-|nuORF;ENSG00000241837|ENST00000290299|ATP5PO	ENST00000495005.5_1_21:35281377-35288052:-|nuORF	ENST00000495005.5_1_21:35281377-35288052:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.28057861328125	2	479.279452	956.544351	-0.1449	-6.9447E-05	0.11553	5.5372E-05	-0.029367	-1.4075E-05	479.27924201869376	76.506	1.7676	73.567	73.08	74.848	-2.9389					94	36	4	0	0	0	0.65582	5	6064	6064;6074;6086;6098;6113		52.299	21.981	1	1497900			62284	9355	51357	51406	68395;68396;68397;68398;68399	68395					0.0643408151404401
VRPPVQVY	8	Unmodified	_VRPPVQVY_					0	0	0		ENST00000495005.5_1_21:35281377-35288052:-|nuORF;ENST00000491703.5_1_21:35279611-35286837:-|nuORF;ENSG00000241837|ENST00000290299|ATP5PO	ENST00000495005.5_1_21:35281377-35288052:-|nuORF	ENST00000495005.5_1_21:35281377-35288052:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	479.279452	956.544351	-0.78751	-0.00037744	0.51694	0.00024776	-0.27057	-0.00012968	479.27929286354646	75.568	2.1266	73.714	72.964	75.091	-1.854	0.073514	0.00024326	NaN	52.299	98	40	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	467570			62285	9355	51357	51406							0.0643408151404401
VRPQSDRAP	9	Unmodified	_VRPQSDRAP_					0	0	0			REV__nc|ENSG00000048649|Q96T23-3|RSF1	REV__nc|ENSG00000048649|Q96T23-3|RSF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.3126220703125	2	513.277972	1024.54139	-0.095901	-4.9224E-05	-2.4638	-0.0012646	-2.5597	-0.0013138	513.2770092182527	105.17	0.44245	105.17	104.96	105.4	0					14	9	2	0	0	0	0.027047	1	11782	11782		87.754	28.972	1	163070	+		62286	16671	51358	51407	68400	68400					0.030102063892172737
VRPRPELR	8	Unmodified	_VRPRPELR_					0	0	0		ENST00000329421.7_1_1:32800654-32801959:-|nuORF	ENST00000329421.7_1_1:32800654-32801959:-|nuORF	ENST00000329421.7_1_1:32800654-32801959:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	511.8142395019531	2	511.814525	1021.6145	-1.0737	-0.00054956	0.80088	0.0004099	-0.27287	-0.00013966	511.81478887315143	50.018	2.3782	47.224	46.637	49.015	-2.794					105	47	4	0	0	0	0.75723	1	3234	3234		23.042	2.0956	1	277830			62287	10429	51359	51408	68401	68401					0.10455379902509776
VRPRTLSA	8	Unmodified	_VRPRTLSA_					0	0	0		ENST00000478153.1_1_2:217363604-217363871:+|nuORF	ENST00000478153.1_1_2:217363604-217363871:+|nuORF	ENST00000478153.1_1_2:217363604-217363871:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	450.2740173339844	2	450.274701	898.534849	-0.13529	-6.0919E-05	0.090648	4.0817E-05	-0.044646	-2.0103E-05	450.27464677011136	147.54	1.7967	147.31	146.82	148.62	-0.22696					100	35	5	0	0	0	0.75006	1	14946	14946		16.473	1.809	1	344090			62288	12486	51360	51409	68402	68402					0.08152313228515595
VRPTRIQVEPA	11	Unmodified	_VRPTRIQVEPA_					0	0	0			REV__ENSG00000105393|ENST00000598188|BABAM1	REV__ENSG00000105393|ENST00000598188|BABAM1	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3687133789062	2	633.369861	1264.72517	-4.1446	-0.0026251	2.9938	0.0018962	-1.1508	-0.00072888	633.3716506579397	149.94	3.0119	148.99	147.85	150.86	-0.9512					218	59	5	0	0	0	0.72064	1	12709	12709		22.58	0.89391	1	281260	+		62289	17720	51361	51410	68403	68403					0.10339555100085818
VRPTRIQVEPA	11	Unmodified	_VRPTRIQVEPA_					0	0	0			REV__ENSG00000105393|ENST00000598188|BABAM1	REV__ENSG00000105393|ENST00000598188|BABAM1	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3692016601562	2	633.369861	1264.72517	-4.8824	-0.0030923	3.9881	0.002526	-0.89421	-0.00056637	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.71789	1	12972	12972		23.523	3.5259	1	765700	+		62290	17720	51361	51410	68404	68404					0.10339555100085818
VRQGKRLR	8	Unmodified	_VRQGKRLR_					0	0	0			REV__ENST00000294517.10_1_1:33547225-33547339:+|nuORF	REV__ENST00000294517.10_1_1:33547225-33547339:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	506.82763671875	2	506.827966	1011.64138	-0.49763	-0.00025221	-0.016497	-8.361E-06	-0.51412	-0.00026057	506.8280160423583	24.713	1.1074	24.713	24.536	25.643	0					48	21	5	0	0	0	0.61758	1	496	496		60.294	0	1	2218800	+		62291	24184	51362	51411	68405	68405					0.1360248851368624
VRQHIIFGISL	11	Unmodified	_VRQHIIFGISL_					0	0	0		ENSG00000081479|ENST00000649046|LRP2;LRP2|p.I2300Sfs*31|1|0.04|ENSG00000081479|chr2:169206821-169206822|-/C|frameshift_variant	ENSG00000081479|ENST00000649046|LRP2	ENSG00000081479|ENST00000649046|LRP2	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8814697265625	2	641.885147	1281.75574	-4.0037	-0.0025699	-0.45506	-0.00029209	-4.4587	-0.002862	642.3862707583961	149.94	3.9275	149.71	147.52	151.45	-0.22696					225	78	5	0	0	0	0.72466	1	15237	15237		19.997	0.89325	1	222110			62292	1662	51363	51412	68406	68406					0.12613333485137446
VRQIVHNVNV	10	Unmodified	_VRQIVHNVNV_					0	0	0			REV__nc|ENSG00000177058|Q8NBW4-2|SLC38A9	REV__nc|ENSG00000177058|Q8NBW4-2|SLC38A9	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3426513671875	2	589.343646	1176.67274	-3.0463	-0.0017953	1.897	0.001118	-1.1493	-0.00067734	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.81992	1	15118	15118		16.473	0.83134	1	272220	+		62293	29022	51364	51413	68407	68407					0.09147016757128767
VRQKIRGSDK	10	Unmodified	_VRQKIRGSDK_					0	0	0			REV__tr|A0A553SRS7|A0A553SRS7_NIACIAminoglycosidephosphotransferaseOS=NialliacirculansOX=1397GN=CEQ21_01660PE=4SV=1	REV__tr|A0A553SRS7|A0A553SRS7_NIACIAminoglycosidephosphotransferaseOS=NialliacirculansOX=1397GN=CEQ21_01660PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.9929809570312	2	593.854378	1185.6942	-0.0012392	-7.3593E-07	2.7984	0.0016618	2.7972	0.0016611	593.8560350859393	69.377	0.29083	69.377	69.184	69.475	0					11	6	2	0	0	0	0.026653	1	6601	6601		49.536	15.614	1	224730	+		62294	30761	51365	51414	68408	68408					0.10878401785839742
VRQKVREHV	9	Unmodified	_VRQKVREHV_					0	0	0		nc|ENSG00000166473|Q7Z442-2|PKD1L2;nc|ENSG00000166473|Q7Z442|PKD1L2;ENST00000533478.5_1_16:81174978-81214887:-|nuORF;nc|ENSG00000166473|Q7Z442-4|PKD1L2;ENST00000299598.11_1_16:81199358-81222588:-|nuORF;nc|ENSG00000166473|Q7Z442-3|PKD1L2	nc|ENSG00000166473|Q7Z442-2|PKD1L2	nc|ENSG00000166473|Q7Z442-2|PKD1L2	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8438720703125	2	575.843813	1149.67307	-2.8608	-0.0016474	1.7444	0.0010045	-1.1164	-0.00064289	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.69123	1	14546	14546		20.947	0	1	356230			62295	15156	51366	51415	68409	68409					0.10422436476960684
VRQLRQVAH	9	Unmodified	_VRQLRQVAH_					0	0	0			REV__nc|ENSG00000122970|Q8WYA0-3|IFT81	REV__nc|ENSG00000122970|Q8WYA0-3|IFT81	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8301391601562	2	553.830706	1105.64686	0.13278	7.3535E-05	-1.033	-0.00057208	-0.90018	-0.00049855	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.64339	1	14207	14207		26.796	0.10319	1	400120	+		62296	18618	51367	51416	68410	68410					0.09826167305504896
VRRGAFGI	8	Unmodified	_VRRGAFGI_					0	0	0			REV__tr|A0A7D7A086|A0A7D7A086_9CLOTAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=accDPE=3SV=1	REV__tr|A0A7D7A086|A0A7D7A086_9CLOTAcetyl-coenzymeAcarboxylasecarboxyltransferasesubunitbetaOS=ClostridiumintestinaleOX=36845GN=accDPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	438.2782287597656	2	438.264136	874.51372	1.12	0.00049084	-1.6715	-0.00073257	-0.55158	-0.00024174	438.26479665650595	62.696	0.32108	62.696	62.581	62.902	0					12	7	2	0	0	0	0.028476	1	5608	5608		44.531	16.277	1	130680	+		62297	32441	51368	51417	68411	68411					0.07144347919665961
VRRHLMARR	9	Unmodified	_VRRHLMARR_					0	0	0			REV__ENST00000596318.1_1_19:49553653-49553959:-|nuORF	REV__ENST00000596318.1_1_19:49553653-49553959:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8560791015625	2	597.859275	1193.704	-3.1766	-0.0018991	-1.6541	-0.00098894	-4.8307	-0.0028881	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.59983	1	14890	14890		31.955	0.42505	1	436470	+		62298	27994	51369	51418	68412	68412					0.11489311310219819
VRRITPTT	8	Unmodified	_VRRITPTT_					0	0	0		tr|A0A7D6VS06|A0A7D6VS06_9CLOTCollagen-likeproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03100PE=4SV=1	tr|A0A7D6VS06|A0A7D6VS06_9CLOTCollagen-likeproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03100PE=4SV=1	tr|A0A7D6VS06|A0A7D6VS06_9CLOTCollagen-likeproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03100PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.2873840332031	2	472.287808	942.561064	-2.429	-0.0011472	2.5145	0.0011876	0.085513	4.0387E-05	472.2888822731472	151.46	1.6275	150.03	149.41	151.04	-1.4344					87	36	4	0	0	0	0.7224	1	14993	14993		38.806	10.552	1	477430			62299	34972	51370	51419	68413	68413					0.08748582399982752
VRRLPNGT	8	Unmodified	_VRRLPNGT_					0	0	0		nc|ENSG00000103152|P29372-5|MPG;nc|ENSG00000103152|P29372-2|MPG;ENSG00000103152|ENST00000356432|MPG;nc|ENSG00000103152|P29372|MPG;chr16:79700-83059|128|15.57|0.91|4.09|+|2|MPG,None|1	nc|ENSG00000103152|P29372-5|MPG	nc|ENSG00000103152|P29372-5|MPG	MULTI-MSMS	OvCa9_classI_Rep2	2	456.7722473144531	2	456.772326	911.530098	-0.55209	-0.00025218	0.40157	0.00018343	-0.15052	-6.8753E-05	456.77237766888294	142.31	1.8774	142.08	141.37	143.25	-0.22697					97	37	4	0	0	0	0.74971	1	14288	14288		26.796	0	1	225920			62300	2286	51371	51420	68414	68414					0.07079429085752054
VRRLQSVLSH	10	Unmodified	_VRRLQSVLSH_					0	0	0			REV__TRRAP|p.Q3700Cfs*14|1|0.37|ENSG00000196367|chr7:99011251-99011252|-/GTGCGTTAAATCTGTCACCAGAA|frameshift_variant	REV__TRRAP|p.Q3700Cfs*14|1|0.37|ENSG00000196367|chr7:99011251-99011252|-/GTGCGTTAAATCTGTCACCAGAA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8561401367188	2	597.856921	1193.69929	-3.1766	-0.0018991	2.2834	0.0013652	-0.89312	-0.00053396	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.73378	1	14858	14858		26.693	8.4308	1	436470	+		62301	22817	51372	51421	68415	68415					0.11018705648461946
VRRLQSVLSH	10	Unmodified	_VRRLQSVLSH_					0	0	0			REV__TRRAP|p.Q3700Cfs*14|1|0.37|ENSG00000196367|chr7:99011251-99011252|-/GTGCGTTAAATCTGTCACCAGAA|frameshift_variant	REV__TRRAP|p.Q3700Cfs*14|1|0.37|ENSG00000196367|chr7:99011251-99011252|-/GTGCGTTAAATCTGTCACCAGAA|frameshift_variant	MSMS	OvCa9_classI_Rep4_	4	597.8553466796875	2	597.856921	1193.69929	NaN	NaN	NaN	NaN	NaN	NaN	NaN	151.04	1	149.6	149.1	150.1	-1.4344								0	0	0	0.14009	1	14926	14926		32.812	6.1195	1		+		62302	22817	51372	51421	68416	68416					0.11018705648461946
VRRMPSLL	8	Unmodified	_VRRMPSLL_					0	0	0		ENST00000474341.5_1_2:9017150-9098660:-|nuORF;ENST00000486484.5_1_2:9002434-9143743:-|nuORF;ENSG00000143797|ENST00000305997|MBOAT2	ENST00000474341.5_1_2:9017150-9098660:-|nuORF	ENST00000474341.5_1_2:9017150-9098660:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.75439453125	2	486.294579	970.574605	1.2541	0.00060985	1.9131	0.00093034	3.1672	0.0015402	486.29594405815806	119.58	0.54426	119.58	119.33	119.88	0					19	13	2	0	0	0	0.028476	1	13696	13696		29.15	11.785	1	233440			62303	5095	51373	51422	68417	68417					0.08814116907581138
VRRPARASPP	10	Unmodified	_VRRPARASPP_					0	0	0			REV__ENST00000588791.1_1_17:27442450-27447678:-|nuORF	REV__ENST00000588791.1_1_17:27442450-27447678:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8292846679688	2	553.830706	1105.64686	-0.8401	-0.00046527	-0.49633	-0.00027488	-1.3364	-0.00074015	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.75594	1	14109	14109		24.203	3.2558	1	245610	+		62304	27894	51374	51423	68418	68418					0.09826167305504896
VRRPHPLTGG	10	Unmodified	_VRRPHPLTGG_					0	0	0		ENST00000527658.1_1_11:644552-646563:-|nuORF	ENST00000527658.1_1_11:644552-646563:-|nuORF	ENST00000527658.1_1_11:644552-646563:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.3165893554688	2	545.317432	1088.62031	-0.51373	-0.00028014	-0.77412	-0.00042214	-1.2878	-0.00070228	545.3169196404446	142.63	4.7541	141.19	139.73	144.49	-1.4427					172	91	2	0	0	0	0.79917	1	14159	14159		19.104	0	1	155190			62305	13239	51375	51424	68419	68419					0.07954478414171717
VRRPLLKE	8	Unmodified	_VRRPLLKE_					0	0	0			REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|9|1|sense	REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|9|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.75982666015625	2	505.827101	1009.63965	-0.26295	-0.00013301	0.70746	0.00035785	0.44451	0.00022484	505.8273766542254	71.369	0.43813	71.369	71.191	71.629	0					18	10	2	0	0	0	0.028476	1	6882	6882		31.955	0	1	588510	+		62306	28218	51376	51425	68420	68420					0.13521434705091906
VRRPTVGIGGD	11	Unmodified	_VRRPTVGIGGD_					0	0	0		nc|ENSG00000096093|Q5JVL4-2|EFHC1;nc|ENSG00000096093|Q5JVL4-3|EFHC1;ENSG00000096093|ENST00000371068|EFHC1	nc|ENSG00000096093|Q5JVL4-2|EFHC1	nc|ENSG00000096093|Q5JVL4-2|EFHC1	MULTI-MSMS	OvCa99_classI_Rep5	1	563.8217163085938	2	563.820004	1125.62546	-0.17221	-9.7097E-05	-0.26273	-0.00014813	-0.43494	-0.00024523	563.8196730419081	61.449	0.75624	61.449	61.156	61.912	0					31	17	3	0	0	0	0.56391	1	5419	5419		47.96	0.30219	1	1947500			62307	1945	51377	51426	68421	68421					0.06766737486145757
VRRRCRDARP	10	Unmodified	_VRRRCRDARP_					0	0	0			REV__ENST00000325083.12_1_8:17780545-17780692:+|nuORF	REV__ENST00000325083.12_1_8:17780545-17780692:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	643.3632202148438	2	642.862546	1283.71054	0.60914	0.00039159	0.52422	0.000337	1.1334	0.0007286	643.3630744343519	164.38	2.1868	164.38	163.43	165.62	0					186	81	3	0	0	0	0.78463	1	19212	19212		20.947	0	1	76612	+		62308	24480	51378	51427	68422	68422					0.08003204470946912
VRRRVIIQGD	10	Unmodified	_VRRRVIIQGD_					0	0	0		nc|ENSG00000145362|Q01484-7|ANK2	nc|ENSG00000145362|Q01484-7|ANK2	nc|ENSG00000145362|Q01484-7|ANK2	MULTI-MSMS	OvCa9_classI_Rep3	3	606.368896484375	2	606.370195	1210.72584	-2.264	-0.0013728	1.1871	0.00071982	-1.0769	-0.00065302	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.79213	1	12471	12471		19.997	3.2794	1	205770			62309	15077	51379	51428	68423	68423					0.12890394539795125
VRRYKQGR	8	Unmodified	_VRRYKQGR_					0	0	0			REV__ENSG00000109111|ENST00000314616|SUPT6H	REV__ENSG00000109111|ENST00000314616|SUPT6H	MSMS	OvCa9_classI_Rep4_	4	531.8161010742188	2	531.817599	1061.62064	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.76	1	136.23	135.73	136.73	-1.5284								0	0	0	0.30129	1	13398	13398		33.516	4.3455	1		+		62310	17918	51380	51429	68424	68424					0.09229898134049108
VRSALRRRWRF	11	Unmodified	_VRSALRRRWRF_					0	0	0		ENST00000566170.1_1_6:13615096-13615348:-|nuORF	ENST00000566170.1_1_6:13615096-13615348:-|nuORF	ENST00000566170.1_1_6:13615096-13615348:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	501.63531494140625	3	501.635765	1501.88547	-7.1576	-0.0035905	3.7637	0.001888	-3.3939	-0.0017025	501.63774554440306	163.54	2.3462	162.14	160.37	162.72	-1.3925					135	52	3	0	0	0	0.7252	2	14210	14177;14210		12.957	4.5502	1	91935			62311	13839	51381	51430	68425;68426	68426					0.15459947607632785
VRSALRRRWRF	11	Unmodified	_VRSALRRRWRF_					0	0	0		ENST00000566170.1_1_6:13615096-13615348:-|nuORF	ENST00000566170.1_1_6:13615096-13615348:-|nuORF	ENST00000566170.1_1_6:13615096-13615348:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.96820068359375	3	501.635765	1501.88547	-6.9477	-0.0034852	3.5011	0.0017563	-3.4467	-0.001729	501.6376473335916	163.82	2.1567	162.19	160.45	162.61	-1.6336					144	60	3	0	0	0	0.72552	1	16103	16103		8.7993	3.6569	1	101620			62312	13839	51381	51430	68427	68427					0.15459947607632785
VRSFLWLAL	9	Unmodified	_VRSFLWLAL_					0	0	0		ENST00000299335.7_1_17:53045900-53046029:-|nuORF	ENST00000299335.7_1_17:53045900-53046029:-|nuORF	ENST00000299335.7_1_17:53045900-53046029:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.2994384765625	2	552.831852	1103.64915	2.7369	0.001513	-0.53379	-0.0002951	2.2031	0.0012179	552.8313750129789	90.248	0.52743	90.248	89.977	90.504	0					32	12	4	0	0	0	0.027462	1	9676	9676		37.159	15.199	1	1601900			62313	10161	51382	51431	68428	68428					0.10147202990606274
VRSGDVDIP	9	Unmodified	_VRSGDVDIP_					0	0	0			REV__ENSG00000166833|ENST00000349880|NAV2	REV__ENSG00000166833|ENST00000349880|NAV2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.77618408203125	2	479.253631	956.49271	0.1462	7.0064E-05	0.25436	0.0001219	0.40055	0.00019197	479.2539216553486	75.122	1.2092	71.891	71.532	72.741	-3.2308					47	24	3	0	0	0	0.027118	1	5870	5870		96.19	19.416	1	422960	+		62314	21225	51383	51432	68429	68429					0.012722930294785328
VRSIVGLPVDL	11	Unmodified	_VRSIVGLPVDL_					0	0	0			REV__nc|ENSG00000063601|Q13613-2|MTMR1	REV__nc|ENSG00000063601|Q13613-2|MTMR1	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3561401367188	2	584.358431	1166.70231	-2.312	-0.0013511	-1.149	-0.00067141	-3.461	-0.0020225	584.3576357597916	144.78	4.7193	144.56	143.3	148.02	-0.22696					267	94	4	0	0	0	0.70865	1	14730	14730		26.693	0	1	180810	+		62315	16763	51384	51433	68430	68430					0.12562535982624468
VRSKRKCY	8	Unmodified	_VRSKRKCY_					0	0	0			REV__PREX1|p.T970Vfs*46|1|0.08|ENSG00000124126|chr20:48650116-48650117|-/CATGGTGGTGATGCAGTGCTGGGTGTAC|frameshift_variant	REV__PREX1|p.T970Vfs*46|1|0.08|ENSG00000124126|chr20:48650116-48650117|-/CATGGTGGTGATGCAGTGCTGGGTGTAC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2676391601562	2	520.295111	1038.57567	-0.71555	-0.0003723	0.42839	0.00022289	-0.28716	-0.00014941	520.2951040250894	30.011	0.45069	30.011	29.735	30.186	0					15	8	3	0	0	0	0.028476	1	1096	1096		25.45	11.675	1	111110	+		62316	18662	51385	51434	68431	68431					0.057923312764842194
VRSLFRDVI	9	Unmodified	_VRSLFRDVI_					0	0	0		tr|A0A7D6ZFV8|A0A7D6ZFV8_9CLOTPatatin-likephospholipasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16645PE=4SV=1	tr|A0A7D6ZFV8|A0A7D6ZFV8_9CLOTPatatin-likephospholipasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16645PE=4SV=1	tr|A0A7D6ZFV8|A0A7D6ZFV8_9CLOTPatatin-likephospholipasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16645PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.8300170898438	2	552.82984	1103.64513	-0.7273	-0.00040207	0.049405	2.7312E-05	-0.6779	-0.00037476	552.8298295070128	81.571	1.6515	78.861	78.494	80.145	-2.7106					90	33	4	0	0	0	0.35444	1	6742	6742		56.721	4.4219	1	1054700			62317	35526	51386	51435	68432	68432					0.09745113496887825
VRSPHPAIQPL	11	Unmodified	_VRSPHPAIQPL_					0	0	0		nc|ENSG00000090621|Q13310-2|PABPC4;nc|ENSG00000090621|Q13310|PABPC4;ENSG00000090621|ENST00000372858|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	nc|ENSG00000090621|Q13310-2|PABPC4	MULTI-SECPEP	OvCa9_classI_Rep2	2	607.3103637695312	2	607.853847	1213.69314	1.2514	0.00076064	-3.0477	-0.0018525	-1.7963	-0.0010919	607.8515484395631	88.403	0.53996	87.036	86.839	87.379	-1.3676					14	10	2	0	0	0	0.025955	1	7782	7782		37.508	4.6958	1	17581			62318	1844	51387	51436	68433	68433					0.09484187416956047
VRSQAHGVI	9	Unmodified	_VRSQAHGVI_					0	0	0			REV__LUC7L3|p.D203H|1|0.39|ENSG00000108848|chr17:50744727-50744727|G/C|missense_variant	REV__LUC7L3|p.D203H|1|0.39|ENSG00000108848|chr17:50744727-50744727|G/C|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	483.77813720703125	2	483.777608	965.540663	-0.24437	-0.00011822	-0.1448	-7.0052E-05	-0.38917	-0.00018827	483.7774886095976	42.905	0.98678	42.905	42.665	43.651	0					51	22	4	0	0	0	0.46356	1	2810	2810		45.972	0.020292	1	3515200	+		62319	28635	51388	51437	68434	68434					0.05651411740200274
VRSRSALSIHI	11	Unmodified	_VRSRSALSIHI_					0	0	0			REV__ENSG00000180720|ENST00000682254|CHRM4	REV__ENSG00000180720|ENST00000682254|CHRM4	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8694458007812	2	619.870028	1237.7255	-3.8587	-0.0023919	2.9348	0.0018192	-0.92393	-0.00057272	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.68757	1	15176	15176		33.922	3.6039	1	492670	+		62320	22187	51389	51438	68435	68435					0.11614974819940471
VRSSLPGD	8	Unmodified	_VRSSLPGD_					0	0	0			REV__ENSG00000131503|ENST00000360839|ANKHD1	REV__ENSG00000131503|ENST00000360839|ANKHD1	MULTI-MSMS	OvCa9_classI_Rep3	3	415.721923828125	2	415.721967	829.429381	1.7526	0.00072857	-1.9593	-0.00081452	-0.20674	-8.5945E-05	415.72103499680065	120.01	1.8058	118.98	118.63	120.43	-1.0271					63	35	3	0	0	0	0.745	1	9158	9158		29.15	2.3535	1	271890	+		62321	19019	51390	51439	68436	68436					0.007843523122346596
VRTADYPLINN	11	Unmodified	_VRTADYPLINN_					0	0	0			REV__nc|ENSG00000127329|P23467-4|PTPRB	REV__nc|ENSG00000127329|P23467-4|PTPRB	MULTI-SECPEP	OvCa99_classI_Rep5	1	637.8330688476562	2	638.338227	1274.6619	1.2181	0.00077757	-2.9753	-0.0018992	-1.7572	-0.0011217	638.3363741508311	124.29	0.59225	124.29	123.92	124.51	0					22	12	3	0	0	0	0.025638	1	14333	14333		37.812	20.447	1	406670	+		62322	18810	51391	51440	68437	68437					0.03555569592208485
VRTFKVRSFV	10	Unmodified	_VRTFKVRSFV_					0	0	0			REV__ENSG00000135040|ENST00000361671|NAA35	REV__ENSG00000135040|ENST00000361671|NAA35	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8692016601562	2	619.87204	1237.72953	-3.8587	-0.0023919	-0.31006	-0.00019219	-4.1687	-0.0025841	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.73378	1	15387	15387		26.693	0	1	492670	+		62323	19249	51392	51441	68438	68438					0.1201706431365892
VRTFKVRSFV	10	Unmodified	_VRTFKVRSFV_					0	0	0			REV__ENSG00000135040|ENST00000361671|NAA35	REV__ENSG00000135040|ENST00000361671|NAA35	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8688354492188	2	619.87204	1237.72953	-3.1194	-0.0019336	-1.2014	-0.00074472	-4.3208	-0.0026783	619.8711316188699	150.89	4.8377	149.46	147.87	152.71	-1.4344					384	112	5	0	0	0	0.66721	1	15057	15057		34.173	2.6427	1	806750	+		62324	19249	51392	51441	68439	68439					0.1201706431365892
VRTGSPRRIQL	11	Unmodified	_VRTGSPRRIQL_					0	0	0		ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8825073242188	2	641.888752	1281.76295	-5.3554	-0.0034376	-4.2627	-0.0027362	-9.6181	-0.0061737	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.65063	1	13067	13067		40.058	2.2467	1	804890			62325	2318	51393	51442	68440	68440					0.13334066085576524
VRTKAKSVF	9	Unmodified	_VRTKAKSVF_					0	0	0			REV__nc|ENSG00000159842|Q12979-2|ABR	REV__nc|ENSG00000159842|Q12979-2|ABR	MULTI-MSMS	OvCa9_classI_Rep2	2	518.3175048828125	2	518.319109	1034.62366	-0.27738	-0.00014377	-3.6187	-0.0018756	-3.8961	-0.0020194	518.317119052338	137.12	1.3347	136.9	136.16	137.49	-0.22697					65	27	3	0	0	0	0.63422	1	13635	13635		27.882	1.0861	1	143020	+		62326	28956	51394	51443	68441	68441					0.10773728468188892
VRTLLQPVSRN	11	Unmodified	_VRTLLQPVSRN_					0	0	0		ENST00000414066.1_1_10:38108659-38108740:-|nuORF	ENST00000414066.1_1_10:38108659-38108740:-|nuORF	ENST00000414066.1_1_10:38108659-38108740:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8818969726562	2	641.883136	1281.75172	-5.3554	-0.0034376	4.4876	0.0028805	-0.86781	-0.00055703	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.68399	2	13159	12971;13159		35.152	2.3396	1	804890			62327	11572	51395	51444	68442;68443	68443					0.12211243991418996
VRTLPEQL	8	Unmodified	_VRTLPEQL_					0	0	0			REV__tr|A0A553SSG8|A0A553SSG8_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=celBPE=4SV=1	REV__tr|A0A553SSG8|A0A553SSG8_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=celBPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	478.2822570800781	2	478.282192	954.549831	0.23585	0.0001128	-0.47891	-0.00022905	-0.24306	-0.00011625	478.28189034540947	81.857	1.4017	80.209	79.767	81.169	-1.6485					51	26	3	0	0	0	0.56195	1	6943	6943		71.296	7.0884	1	1372200	+		62328	30837	51396	51445	68444	68444					0.07073760305854648
VRTLPEQLL	9	Unmodified	_VRTLPEQLL_					0	0	0			REV__tr|A0A553SSG8|A0A553SSG8_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=celBPE=4SV=1	REV__tr|A0A553SSG8|A0A553SSG8_NIACIPermeaseIICcomponentOS=NialliacirculansOX=1397GN=celBPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.3440551757812	2	534.824224	1067.63389	2.0268	0.001084	-1.169	-0.00062521	0.85785	0.0004588	534.8230037366632	95.562	0.58459	95.562	95.284	95.869	0					27	13	3	0	0	0	0.027462	1	10426	10426		37.812	2.1932	1	1318200	+		62329	30837	51397	51446	68445	68445					0.10278291402755713
VRTMGTAL	8	Oxidation (M)	_VRTM(Oxidation (M))GTAL_		VRTM(1)GTAL		VRTM(100)GTAL	0	0	1		ENST00000379066.5_1_2:37501659-37501758:-|nuORF	ENST00000379066.5_1_2:37501659-37501758:-|nuORF	ENST00000379066.5_1_2:37501659-37501758:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	432.7335510253906	2	432.73402	863.453487	-0.13449	-5.8199E-05	-3.7087	-0.0016049	-3.8432	-0.0016631	432.73231227352187	54.095	2.1988	50.848	50.415	52.614	-3.2474					82	42	3	0	0	0	0.33245	1	3314	3314		101.21	15.852	1	735470			62330	11117	51398	51447	68446	68446		315			0.01629869474265888
VRTPSATL	8	Unmodified	_VRTPSATL_					0	0	0		ENST00000542466.2_1_12:58120972-58121218:+|nuORF	ENST00000542466.2_1_12:58120972-58121218:+|nuORF	ENST00000542466.2_1_12:58120972-58121218:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	422.748779296875	2	422.747985	843.481417	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.37	1	76.619	76.119	77.119	-2.7514								0	0	0	0.30129	1	6436	6436		60.972	0	1				62331	13480	51399	51448	68447	68447					0.053415157259905754
VRTPYTMSY	9	Unmodified	_VRTPYTMSY_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	OvCa9_classI_Rep3	3	559.2710571289062	2	559.270967	1116.52738	-0.6652	-0.00037203	0.41261	0.00023076	-0.25259	-0.00014127	559.2710456824908	78.459	2.0517	76.107	75.596	77.647	-2.3527					93	40	4	0	0	0	0.014964	2	4185	4185;4191		153.04	72.591	1	783840			62332	7428	51400	51449	68448;68449	68448					-0.02622207154058742
VRTPYTMSY	9	Unmodified	_VRTPYTMSY_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	559.270967	1116.52738	0.37894	0.00021193	-0.37335	-0.0002088	0.0055914	3.1271E-06	559.2705809002911	78.193	1.5254	76.453	75.777	77.302	-1.7398	0.16738	-0.00010423	NaN	153.04	67	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	202900			62333	7428	51400	51449							-0.02622207154058742
VRTPYTMSY	9	Unmodified	_VRTPYTMSY_					0	0	0		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	559.270967	1116.52738	0.76292	0.00042668	-1.023	-0.00057215	-0.26012	-0.00014548	559.2701882467893	79.05	1.5833	76.298	75.991	77.575	-2.7514	0.012081	-0.00083093	NaN	153.04	69	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	879170			62334	7428	51400	51449							-0.02622207154058742
VRTPYTMSY	9	Oxidation (M)	_VRTPYTM(Oxidation (M))SY_		VRTPYTM(1)SY		VRTPYTM(200)SY	0	0	1		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.2697143554688	2	567.268424	1132.5223	0.82929	0.00047043	1.6616	0.0009426	2.4909	0.001413	567.2678005793906	64.418	1.8446	60.943	60.393	62.238	-3.475					119	37	5	0	0	0	0.0076794	3	4593	4571;4583;4593		200.16	116.36	1	843940			62335	7428	51400	51450	68450;68451;68452	68452		225			-0.038665110166903105
VRTPYTMSY	9	Oxidation (M)	_VRTPYTM(Oxidation (M))SY_					0	0	1		ENSG00000173933|ENST00000310092|RBM4;nc|ENSG00000239306|Q96PK6-5|RBM14	ENSG00000173933|ENST00000310092|RBM4	ENSG00000173933|ENST00000310092|RBM4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	567.268424	1132.5223	-1.2695	-0.00072016	1.1832	0.0006712	-0.086309	-4.896E-05	567.2689573477594	63.791	1.4173	61.047	60.374	61.791	-2.7444	0.052093	-2.1067E-05	NaN	200.16	49	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	124520			62336	7428	51400	51450				225			-0.038665110166903105
VRTSFLLNL	9	Unmodified	_VRTSFLLNL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;ENST00000572615.1_1_17:1372344-1373609:-|nuORF	nc|ENSG00000197879|O00159-2|MYO1C;ENST00000572615.1_1_17:1372344-1373609:-|nuORF	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	OvCa99_classI_Rep5	1	531.8201904296875	2	531.818941	1061.62333	1.7622	0.00093719	0.23522	0.0001251	1.9975	0.0010623	531.8188977891056	120	0.7029	120	119.65	120.36	0					33	16	3	0	0	0	0.1243	1	13782	13782		90.601	19.223	1	778590			62337	8756;13912	51401	51451	68453	68453					0.09498308748334239
VRTSFLLNL	9	Unmodified	_VRTSFLLNL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;ENST00000572615.1_1_17:1372344-1373609:-|nuORF	nc|ENSG00000197879|O00159-2|MYO1C;ENST00000572615.1_1_17:1372344-1373609:-|nuORF	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8164672851562	2	531.818941	1061.62333	-1.6193	-0.00086116	-2.2339	-0.001188	-3.8532	-0.0020492	531.8176416867242	139.25	4.4783	138.19	136.9	141.38	-1.0595					273	90	4	0	0	0	0.59259	1	11561	11561		32.812	2.3088	1	178650			62338	8756;13912	51401	51451	68454	68454					0.09498308748334239
VRTYFFSAE	9	Unmodified	_VRTYFFSAE_					0	0	0		ENSG00000143850|ENST00000272203|PLEKHA6	ENSG00000143850|ENST00000272203|PLEKHA6	ENSG00000143850|ENST00000272203|PLEKHA6	MULTI-MSMS	OvCa9_classI_Rep2	2	560.2764892578125	2	560.277106	1118.53966	0.23753	0.00013308	-3.3666	-0.0018862	-3.1291	-0.0017531	560.2751293232092	105.96	2.1264	105.52	105.15	107.27	-0.43642					121	42	5	0	0	0	0.44568	1	9845	9845		47.657	5.2612	1	1293000			62339	5100	51402	51452	68455	68455					-0.014868474193690417
VRVDRSRSGLG	11	Unmodified	_VRVDRSRSGLG_					0	0	0		ENST00000507210.5_1_4:48833324-48834645:+|nuORF	ENST00000507210.5_1_4:48833324-48834645:+|nuORF	ENST00000507210.5_1_4:48833324-48834645:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	601.298828125	2	601.341635	1200.66872	0.71652	0.00043088	-3.8275	-0.0023016	-3.111	-0.0018708	601.3393305119697	103.37	0.33187	103.37	103.18	103.51	0					11	7	2	0	0	0	0.02557	1	11537	11537		12.812	0	1	158050			62340	12925	51403	51453	68456	68456					0.07640927263423691
VRVHEFRV	8	Unmodified	_VRVHEFRV_					0	0	0			REV__ENST00000547491.1_1_12:112186933-112194274:+|nuORF	REV__ENST00000547491.1_1_12:112186933-112194274:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.3011474609375	2	521.30125	1040.58795	-1.7904	-0.00093334	1.5523	0.0008092	-0.23814	-0.00012414	521.3020127691736	50.387	1.4365	47.245	46.82	48.256	-3.1416					66	27	3	0	0	0	0.745	1	2919	2919		29.15	3.5755	1	883080	+		62341	15547	51404	51454	68457	68457					0.06927691011196657
VRVHGSVAPPR	11	Unmodified	_VRVHGSVAPPR_					0	0	0		ENSG00000167098|ENST00000356173|SUN5	ENSG00000167098|ENST00000356173|SUN5	ENSG00000167098|ENST00000356173|SUN5	MULTI-MSMS	OvCa99_classI_Rep5	1	587.8468017578125	2	587.843813	1173.67307	2.1374	0.0012565	3.1746	0.0018662	5.312	0.0031226	587.8456426252047	107.42	1.9618	107.42	107.14	109.11	0					101	45	5	0	0	0	0.68021	1	12162	12162		36.447	1.2947	1	20291000			62342	6753	51405	51455	68458	68458					0.09318436476996794
VRVKFRKA	8	Unmodified	_VRVKFRKA_					0	0	0			REV__F10|p.V424Efs*20|1|0.22|ENSG00000126218|chr13:113149318-113149319|-/TGAAGCATACATATGCGAAAAATTATTTG|frameshift_variant	REV__F10|p.V424Efs*20|1|0.22|ENSG00000126218|chr13:113149318-113149319|-/TGAAGCATACATATGCGAAAAATTATTTG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.6949462890625	2	502.329811	1002.64507	0.0092148	4.6289E-06	-1.8219	-0.00091521	-1.8127	-0.00091058	502.3286465338501	31.427	0.44324	31.427	31.264	31.708	0					14	8	3	0	0	0	0.028476	1	1304	1304		26.796	18.565	1	69790	+		62343	18776	51406	51456	68459	68459					0.14385158287564082
VRVLELGNI	9	Unmodified	_VRVLELGNI_					0	0	0		ENST00000407595.2_1_2:56602975-56611629:+|nuORF	ENST00000407595.2_1_2:56602975-56611629:+|nuORF	ENST00000407595.2_1_2:56602975-56611629:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	506.8114929199219	2	506.811116	1011.60768	-0.96963	-0.00049142	-0.36531	-0.00018514	-1.3349	-0.00067656	506.8110395873254	89.248	2.4224	87.118	86.702	89.124	-2.1309					173	47	5	0	0	0	0.44568	1	5543	5543		47.657	1.6851	1	9108500			62344	11500	51407	51457	68460	68460					0.10234022231293238
VRVLQPLRA	9	Unmodified	_VRVLQPLRA_					0	0	0		CACNA1G|p.R186Q|1|1.0|ENSG00000006283|chr17:50569774-50569774|G/A|missense_variant	CACNA1G|p.R186Q|1|1.0|ENSG00000006283|chr17:50569774-50569774|G/A|missense_variant	CACNA1G|p.R186Q|1|1.0|ENSG00000006283|chr17:50569774-50569774|G/A|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	526.3410034179688	2	526.340375	1050.6662	2.2537	0.0011862	-0.17007	-8.9517E-05	2.0837	0.0010967	526.3401782230693	75.8	0.91692	75.8	75.563	76.48	0					55	22	3	0	0	0	0.44294	1	7592	7592		47.916	15.961	1	1049600			62345	173	51408	51458	68461	68461					0.14289123596404352
VRVPRQSLL	9	Unmodified	_VRVPRQSLL_					0	0	0		ENSG00000087008|ENST00000356406|ACOX3;nc|ENSG00000087008|O15254-2|ACOX3;ENST00000510365.5_1_4:8376552-8417570:-|nuORF	ENSG00000087008|ENST00000356406|ACOX3	ENSG00000087008|ENST00000356406|ACOX3	MULTI-MSMS	OvCa99_classI_Rep5	1	534.3418579101562	2	534.337833	1066.66111	2.1801	0.0011649	3.8262	0.0020445	6.0063	0.0032094	534.3397114365661	100.42	1.1638	100.42	100.19	101.36	0					50	27	4	0	0	0	0.064985	1	11131	11131		110.12	8.8673	1	2988200			62346	1758	51409	51459	68462	68462					0.1304481973379552
VRVPYELTL	9	Unmodified	_VRVPYELTL_					0	0	0		sp|P16727|UL84_HCMVAProteinUL84OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL84PE=1SV=1;sp|F5HB40|UL84_HCMVMProteinUL84OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL84PE=3SV=1	sp|P16727|UL84_HCMVAProteinUL84OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL84PE=1SV=1	sp|P16727|UL84_HCMVAProteinUL84OS=Humancytomegalovirus(strainAD169)OX=10360GN=UL84PE=1SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3168334960938	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.63422	1	14117	14117		27.882	2.3082	1	202430			62347	32851	51410	51460	68463	68463					0.08222889028479585
VRVRLGET	8	Unmodified	_VRVRLGET_					0	0	0			REV__ENST00000326005.10_1_15:64980692-64980890:-|nuORF	REV__ENST00000326005.10_1_15:64980692-64980890:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	465.2800598144531	2	465.279983	928.545414	-0.45182	-0.00021022	0.50516	0.00023504	0.053332	2.4814E-05	465.28009725389603	35.258	0.70213	35.258	34.818	35.52	0					29	14	3	0	0	0	0.7224	1	1763	1763		38.806	1.647	1	378080	+		62348	24490	51411	51461	68464	68464					0.07828295882939074
VRVRLGET	8	Unmodified	_VRVRLGET_					0	0	0			REV__ENST00000326005.10_1_15:64980692-64980890:-|nuORF	REV__ENST00000326005.10_1_15:64980692-64980890:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	465.279983	928.545414	-0.45182	-0.00021022	0.50516	0.00023504	0.053332	2.4814E-05	465.28009725389603	35.258	0.70213	35.258	34.818	35.52	0	0	0	NaN	38.806	29	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	378080	+		62349	24490	51411	51461							0.07828295882939074
VRVRSALGPGR	11	Unmodified	_VRVRSALGPGR_					0	0	0			REV__ENST00000532888.6_1_11:118899072-118900094:-|nuORF	REV__ENST00000532888.6_1_11:118899072-118900094:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3555908203125	2	584.357088	1166.69962	-1.7162	-0.0010029	0.61767	0.00036094	-1.0985	-0.00064192	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.72064	1	14433	14433		22.58	3.4761	1	833330	+		62350	27247	51412	51462	68465	68465					0.122941253683166
VRVRVGVGDVR	11	Unmodified	_VRVRVGVGDVR_					0	0	0		ENST00000409185.5_1_2:131808281-131808602:-|nuORF	ENST00000409185.5_1_2:131808281-131808602:-|nuORF	ENST00000409185.5_1_2:131808281-131808602:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3697509765625	2	606.370195	1210.72584	-3.14	-0.001904	2.1543	0.0013063	-0.98567	-0.00059768	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.72064	1	14939	14939		22.58	0.89391	1	257720			62351	11517	51413	51463	68466	68466					0.12890394539795125
VRVVIHSPML	10	Unmodified	_VRVVIHSPML_					0	0	0			REV__ENST00000497057.1_1_1:201435542-201435581:-|nuORF	REV__ENST00000497057.1_1_1:201435542-201435581:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8424682617188	2	575.841894	1149.66923	-2.1491	-0.0012375	4.2038	0.0024207	2.0547	0.0011832	575.8441928035448	141.47	4.0925	141.24	139.21	143.3	-0.22696					166	82	3	0	0	0	0.78463	1	14136	14136		20.947	0.95016	1	100260	+		62352	26768	51414	51464	68467	68467					0.10038630658914371
VRVWFQNR	8	Unmodified	_VRVWFQNR_					0	0	0		ENSG00000214513|ENST00000398468|NOTO	ENSG00000214513|ENST00000398468|NOTO	ENSG00000214513|ENST00000398468|NOTO	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.8297729492188	2	552.8067	1103.59885	1.0211	0.00056445	-3.3707	-0.0018633	-2.3496	-0.0012989	552.8049518609582	79.484	2.0716	77.744	76.951	79.023	-1.7398					109	40	4	0	0	0	0.028476	1	6804	6804		44.531	0.41427	1	152060			62353	9174	51415	51465	68468	68468					0.05119093385451379
VRVYLVRRRQN	11	Unmodified	_VRVYLVRRRQN_					0	0	0		ENST00000366783.7_1_1:227083353-227083530:+|nuORF	ENST00000366783.7_1_1:227083353-227083530:+|nuORF	ENST00000366783.7_1_1:227083353-227083530:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	487.2912292480469	3	486.963659	1457.86915	-6.9542	-0.0033864	-2.5955	-0.0012639	-9.5496	-0.0046503	486.9622029105925	158.45	2.296	157.18	156.33	158.63	-1.267					151	56	3	0	0	0	0.72545	1	13649	13649		9.6461	0.43434	1	50747			62354	10828	51416	51466	68469	68469					0.15852821650878468
VRWGPAGSGLG	11	Unmodified	_VRWGPAGSGLG_					0	0	0		ENST00000470670.5_1_1:228284963-228285711:+|nuORF	ENST00000470670.5_1_1:228284963-228285711:+|nuORF	ENST00000470670.5_1_1:228284963-228285711:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3316040039062	2	528.78289	1055.55123	-0.21029	-0.0001112	-0.28492	-0.00015066	-0.49521	-0.00026186	528.7826564365448	51.366	0.4668	51.366	51.078	51.544	0					21	10	3	0	0	0	0.025638	1	3944	3944		45.972	22.45	1	657000			62355	12368	51417	51467	68470	68470					0.02567394394600342
VRWHQILA	8	Unmodified	_VRWHQILA_					0	0	0			REV__nc|ENSG00000131849|P52740-2|ZNF132	REV__nc|ENSG00000131849|P52740-2|ZNF132	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.7504577636719	2	511.798343	1021.58213	-0.84652	-0.00043325	1.0798	0.00055266	0.23333	0.00011942	511.7991316948211	36.494	0.31158	36.494	36.351	36.662	0					9	6	2	0	0	0	0.028476	1	1908	1908		37.028	22.364	1	49784	+		62356	19039	51418	51468	68471	68471					0.07220592499504619
VRWRMRKLKYK	11	Unmodified	_VRWRMRKLKYK_					0	0	0		TBRG4|p.I596Dfs*8|1|0.09|ENSG00000136270|chr7:45101267-45101268|-/T|frameshift_variant;ENSG00000136270|ENST00000258770|TBRG4;nc|ENSG00000136270|Q969Z0-2|TBRG4	TBRG4|p.I596Dfs*8|1|0.09|ENSG00000136270|chr7:45101267-45101268|-/T|frameshift_variant;nc|ENSG00000136270|Q969Z0-2|TBRG4	TBRG4|p.I596Dfs*8|1|0.09|ENSG00000136270|chr7:45101267-45101268|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	521.984619140625	3	521.985407	1562.93439	-4.6275	-0.0024155	4.2783	0.0022332	-0.34923	-0.00018229	521.9874825988561	161.37	1.9376	161.15	159.95	161.88	-0.22696					86	38	3	0	0	0	0.72582	1	16437	16437		1.523	0.20106	1	39687			62357	4479;15036	51419	51469	68472	68472					0.17544099852352701
VRWTDCKNL	9	Unmodified	_VRWTDCKNL_					0	0	0		L1PA7_dup282|chr1:88818677-88820142:+|1.0289078366989055|0.4624574098713206|1.15|428.0|56|1|anti-sense	L1PA7_dup282|chr1:88818677-88820142:+|1.0289078366989055|0.4624574098713206|1.15|428.0|56|1|anti-sense	L1PA7_dup282|chr1:88818677-88820142:+|1.0289078366989055|0.4624574098713206|1.15|428.0|56|1|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	567.7899780273438	2	567.789858	1133.56516	1.6949	0.00096235	-1.2602	-0.00071551	0.43473	0.00024684	567.7892005307236	148.43	1.5127	148.43	147.36	148.87	0					62	30	4	0	0	0	0.35444	1	17391	17391		56.721	15.943	1	134630			62358	14736	51420	51470	68473	68473					0.0037230383138648904
VRWWPSRR	8	Unmodified	_VRWWPSRR_					0	0	0		ENST00000308893.8_1_16:29989133-29989654:+|nuORF	ENST00000308893.8_1_16:29989133-29989654:+|nuORF	ENST00000308893.8_1_16:29989133-29989654:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	571.8186645507812	2	571.820141	1141.62573	0.10677	6.1051E-05	2.2423	0.0012822	2.3491	0.0013433	571.8214194480303	73.66	5.2921	73.66	72.842	78.134	0					327	131	5	0	0	0	0.64026	1	7358	7358		55.504	0.72789	1	98438000			62359	10268	51421	51471	68474	68474					0.0605820199664322
VRYGGTLKL	9	Unmodified	_VRYGGTLKL_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MULTI-MSMS	OvCa99_classI_Rep5	1	503.80670166015625	2	503.805834	1005.59712	-1.0355	-0.00052171	0.29369	0.00014796	-0.74184	-0.00037374	503.805891890955	65.883	0.70641	65.883	65.665	66.372	0					48	17	5	0	0	0	0.091859	1	6071	6071		99.375	14.459	1	11863000			62360	2201	51422	51472	68475	68475					0.09454039576849027
VRYGGTLKL	9	Unmodified	_VRYGGTLKL_					0	0	0		ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	ENSG00000101825|ENST00000217939|MXRA5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	503.805834	1005.59712	-1.6128	-0.00081251	-6.9908	-0.003522	-8.6036	-0.0043345	503.80214177048526	68.486	0.2966	65.866	65.671	65.968	-2.6203	-0.0087647	-0.0069843	NaN	99.375	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7952.4			62361	2201	51422	51472							0.09454039576849027
VSAAACLLGQL	11	Unmodified	_VSAAACLLGQL_					0	0	0		ENST00000486644.1_1_2:219558031-219561354:+|nuORF;nc|ENSG00000163482|Q9NRP7-2|STK36;ENSG00000163482|ENST00000295709|STK36	ENST00000486644.1_1_2:219558031-219561354:+|nuORF	ENST00000486644.1_1_2:219558031-219561354:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.2904052734375	2	523.289159	1044.56377	-0.58138	-0.00030423	-3.1707	-0.0016592	-3.7521	-0.0019634	523.2872096280854	96.142	1.4069	93.717	93.254	94.661	-2.4256					59	27	3	0	0	0	0.4646	1	8466	8466		56.434	6.8977	1	600950			62362	6314	51423	51473	68476	68476					0.043266697426361134
VSAAKNHKDKT	11	Unmodified	_VSAAKNHKDKT_					0	0	0		tr|A0A553SLV5|A0A553SLV5_NIACIPeptidaseOS=NialliacirculansOX=1397GN=CEQ21_21250PE=4SV=1	tr|A0A553SLV5|A0A553SLV5_NIACIPeptidaseOS=NialliacirculansOX=1397GN=CEQ21_21250PE=4SV=1	tr|A0A553SLV5|A0A553SLV5_NIACIPeptidaseOS=NialliacirculansOX=1397GN=CEQ21_21250PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.2143859863281	3	400.222805	1197.64658	1.2026	0.0004813	2.3763	0.00095104	3.5789	0.0014323	400.2223888990402	47.449	0.43036	47.449	47.294	47.724	0					10	9	2	0	0	0	0.025481	1	3421	3421		27.554	1.662	1	44177			62363	33769	51424	51474	68477	68477					0.055667027949766634
VSAAQTKKTL	10	Unmodified	_VSAAQTKKTL_					0	0	0			REV__ENSG00000106628|ENST00000610533|POLD2	REV__ENSG00000106628|ENST00000610533|POLD2	MULTI-MSMS	OvCa9_classI_Rep2	2	523.8138427734375	2	523.813856	1045.61316	2.8114	0.0014727	-2.6468	-0.0013864	0.16465	8.6246E-05	523.812092065733	27.011	0.63779	24.301	24.022	24.66	-2.7097					38	19	3	0	0	0	0.53807	1	425	425		49.536	6.6718	1	44042	+		62364	17815	51425	51475	68478	68478					0.0921770102308983
VSADEWVV	8	Unmodified	_VSADEWVV_					0	0	0			REV__ENST00000263257.5_1_19:46437619-46437739:-|nuORF	REV__ENST00000263257.5_1_19:46437619-46437739:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	452.7224426269531	2	452.724175	903.433798	0.073929	3.3469E-05	-3.6581	-0.0016561	-3.5842	-0.0016226	452.72207639455024	33.249	1.4601	33.249	32.844	34.304	0					65	29	4	0	0	0	0.44269	1	1525	1525		83.287	2.8326	1	189740	+		62365	23996	51426	51476	68479	68479					-0.021781832648571253
VSAELFLFPI	10	Unmodified	_VSAELFLFPI_					0	0	0			REV__CDH16|p.D152V|1|0.43|ENSG00000166589|chr16:66915348-66915348|T/A|missense_variant	REV__CDH16|p.D152V|1|0.43|ENSG00000166589|chr16:66915348-66915348|T/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	568.7945556640625	2	568.323525	1134.6325	-1.0755	-0.00061123	-3.2332	-0.0018375	-4.3087	-0.0024487	568.3213859680078	100.98	0.61457	99.37	99.094	99.708	-1.6053					18	11	2	0	0	0	0.026752	1	6910	6910		35.618	12.096	1	29663	+		62366	15767	51427	51477	68480	68480					0.07056657313978576
VSAEPLPLAK	10	Unmodified	_VSAEPLPLAK_					0	0	0			REV__ENSG00000145362|ENST00000357077|ANK2	REV__ENSG00000145362|ENST00000357077|ANK2	MULTI-MSMS	OvCa9_classI_Rep3	3	512.8046875	2	512.8055	1023.59645	0.48569	0.00024906	-0.496	-0.00025435	-0.010311	-5.2876E-06	512.8051194113467	130.74	1.1749	129.61	129.32	130.49	-1.1249					50	23	3	0	0	0	0.72319	1	10423	10423		27.882	4.3595	1	153750	+		62367	19961	51428	51478	68481	68481					0.08559200137142398
VSAGRTGLRL	10	Unmodified	_VSAGRTGLRL_					0	0	0		ENST00000601837.1_1_19:40022087-40023442:-|nuORF	ENST00000601837.1_1_19:40022087-40023442:-|nuORF	ENST00000601837.1_1_19:40022087-40023442:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	515.3110961914062	2	515.311815	1028.60908	-2.0827	-0.0010732	1.7149	0.00088368	-0.36786	-0.00018956	515.312623228854	35.485	1.3896	32.775	32.503	33.893	-2.7097					66	27	3	0	0	0	0.58067	1	1475	1475		44.377	3.599	1	694720			62368	14233	51429	51479	68482	68482					0.09591656320026232
VSAGSSTCR	9	Unmodified	_VSAGSSTCR_					0	0	0		chr19:11554365-11559181|106|61.49|0.85|6.18|-|2|ELOF1,None|1	chr19:11554365-11559181|106|61.49|0.85|6.18|-|2|ELOF1,None|1	chr19:11554365-11559181|106|61.49|0.85|6.18|-|2|ELOF1,None|1	MULTI-MSMS	OvCa9_classI_Rep2	2	434.203857421875	2	434.203084	866.391615	1.2394	0.00053816	-0.82374	-0.00035767	0.41569	0.00018049	434.2025952345841	127.91	1.6798	127.68	127.34	129.02	-0.22697					69	33	3	0	0	0	0.63422	1	12525	12525		27.882	3.6795	1	238510			62369	401	51430	51480	68483	68483					-0.046924819448804556
VSAGSSTCR	9	Unmodified	_VSAGSSTCR_					0	0	0		chr19:11554365-11559181|106|61.49|0.85|6.18|-|2|ELOF1,None|1	chr19:11554365-11559181|106|61.49|0.85|6.18|-|2|ELOF1,None|1	chr19:11554365-11559181|106|61.49|0.85|6.18|-|2|ELOF1,None|1	MULTI-MSMS	OvCa9_classI_Rep3	3	434.20269775390625	2	434.203084	866.391615	1.2083	0.00052466	-0.70905	-0.00030787	0.49928	0.00021679	434.2025958640944	128.74	0.88927	127.64	127.37	128.26	-1.0933					42	17	3	0	0	0	0.63422	1	10159	10159		27.882	2.3082	1	151830			62370	401	51430	51480	68484	68484					-0.046924819448804556
VSAGSSTCR	9	Unmodified	_VSAGSSTCR_					0	0	0		chr19:11554365-11559181|106|61.49|0.85|6.18|-|2|ELOF1,None|1	chr19:11554365-11559181|106|61.49|0.85|6.18|-|2|ELOF1,None|1	chr19:11554365-11559181|106|61.49|0.85|6.18|-|2|ELOF1,None|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	434.2026672363281	2	434.203084	866.391615	1.6432	0.00071349	-1.2843	-0.00055766	0.35889	0.00015583	434.20235699405873	129.11	2.4152	127.66	126.27	128.68	-1.4565					81	47	4	0	0	0	0.60342	1	12353	12353		31.53	2.3803	1	260680			62371	401	51430	51480	68485	68485					-0.046924819448804556
VSALAAAAR	9	Unmodified	_VSALAAAAR_					0	0	0			REV__nc|ENSG00000288640|O00458-2|IFRD1	REV__nc|ENSG00000288640|O00458-2|IFRD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.5585021972656	2	415.248152	828.481751	0.25099	0.00010422	0.53739	0.00022315	0.78838	0.00032737	415.2481217801773	55.381	0.20702	55.381	55.273	55.48	0					7	4	2	0	0	0	0.027448	1	4541	4541		44.117	6.9577	1	115130	+		62372	16422	51431	51481	68486	68486					0.06064935445840547
VSALGWLIP	9	Unmodified	_VSALGWLIP_					0	0	0			REV__ENST00000481208.5_1_1:55008062-55058232:+|nuORF	REV__ENST00000481208.5_1_1:55008062-55058232:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.8200378417969	2	478.284203	954.553853	2.2626	0.0010822	-3.9733	-0.0019004	-1.7108	-0.00081823	478.28203709659306	91.482	0.41325	91.482	91.255	91.668	0					12	9	2	0	0	0	0.027462	1	9848	9848		25.45	0	1	277400	+		62373	26474	51432	51482	68487	68487					0.07475849799561729
VSAPPMALQN	10	Unmodified	_VSAPPMALQN_					0	0	0			REV__ENST00000576635.6_1_17:4439512-4440234:+|nuORF	REV__ENST00000576635.6_1_17:4439512-4440234:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	513.8143920898438	2	514.265684	1026.51682	-0.38651	-0.00019877	-0.05812	-2.9889E-05	-0.44463	-0.00022866	514.2656694235741	95.859	1.3999	94.03	93.531	94.931	-1.8286					45	27	2	0	0	0	0.026936	1	6348	6348		84.916	28.194	1	88553	+		62374	22333	51433	51483	68488	68488					0.004618101914957151
VSAPPMALQN	10	Unmodified	_VSAPPMALQN_					0	0	0			REV__ENST00000576635.6_1_17:4439512-4440234:+|nuORF	REV__ENST00000576635.6_1_17:4439512-4440234:+|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	514.265684	1026.51682	1.7001	0.00087432	1.0764	0.00055357	2.7766	0.0014279	514.2664681630564	93.767	0.29242	93.767	93.59	93.883	0	-0.16389	0.0011374	NaN	84.916	12	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	313650	+		62375	22333	51433	51483							0.004618101914957151
VSAPSQDLLI	10	Unmodified	_VSAPSQDLLI_					0	0	0		nc|ENSG00000089472|Q9BQS7-3|HEPH	nc|ENSG00000089472|Q9BQS7-3|HEPH	nc|ENSG00000089472|Q9BQS7-3|HEPH	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.6450805664062	2	521.792589	1041.57063	1.2939	0.00067516	1.293	0.00067465	2.5869	0.0013498	521.7928948250682	126.11	0.65633	126.11	125.71	126.37	0					21	13	2	0	0	0	0.026782	1	14584	14584		37.812	0.65241	1	131420			62376	14913	51434	51484	68489	68489					0.0515030589485832
VSAPSVPSSSN	11	Unmodified	_VSAPSVPSSSN_					0	0	0			REV__IRF2BPL|p.E779Kfs*6|1|0.18|ENSG00000119669|chr14:77025459-77025459|G/-|frameshift_variant	REV__IRF2BPL|p.E779Kfs*6|1|0.18|ENSG00000119669|chr14:77025459-77025459|G/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2810668945312	2	516.253828	1030.4931	-0.27664	-0.00014282	2.8329	0.0014625	2.5563	0.0013197	516.2541645110064	60.812	0.46942	60.812	60.559	61.028	0					22	10	3	0	0	0	0.025528	1	5352	5352		35.152	9.578	1	177340	+		62377	18457	51435	51485	68490	68490					-0.020923320412975954
VSAQDRQLL	9	Unmodified	_VSAQDRQLL_					0	0	0		nc|ENSG00000111859|Q14511-3|NEDD9;ENSG00000111859|ENST00000379446|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	nc|ENSG00000111859|Q14511-3|NEDD9	MSMS	OvCa99_classI_Rep5	1	515.2879638671875	2	515.288005	1028.56146	NaN	NaN	NaN	NaN	NaN	NaN	NaN	38.662	1	38.662	38.162	39.162	0								0	0	0	0.17131	1	2214	2214		47.657	0	1				62378	2858	51436	51486	68491	68491					0.04831957329201941
VSARTLVQR	9	Unmodified	_VSARTLVQR_					0	0	0			REV__ENST00000529652.1_1_17:80551333-80551621:+|nuORF	REV__ENST00000529652.1_1_17:80551333-80551621:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.3114013671875	2	515.311815	1028.60908	0.67052	0.00034553	-1.334	-0.00068741	-0.66345	-0.00034188	515.3111559710834	35.314	1.6978	32.465	32.19	33.887	-2.849					108	33	5	0	0	0	0.48047	1	1165	1165		44.377	0	1	2437400	+		62379	27194	51437	51487	68492	68492					0.09591656320048969
VSASHLLL	8	Unmodified	_VSASHLLL_					0	0	0		nc|ENSG00000165973|Q92832-2|NELL1;ENSG00000165973|ENST00000357134|NELL1	nc|ENSG00000165973|Q92832-2|NELL1	nc|ENSG00000165973|Q92832-2|NELL1	MULTI-MSMS	OvCa9_classI_Rep2	2	420.2528991699219	2	420.252903	838.491253	0.41101	0.00017273	-0.075014	-3.1525E-05	0.336	0.0001412	420.2527341495351	108.37	2.424	108.15	107.78	110.2	-0.22498					119	48	4	0	0	0	0.60486	1	10146	10146		62.978	0	1	477420			62380	6624	51438	51488	68493	68493					0.06554703731376321
VSASSRKKK	9	Unmodified	_VSASSRKKK_					0	0	0			REV__nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	REV__nc|ENSG00000163935|Q9UHJ3-2|SFMBT1	MULTI-MSMS	OvCa9_classI_Rep2	2	495.8058776855469	2	495.806365	989.598178	-1.6284	-0.00080736	1.2698	0.00062956	-0.35861	-0.0001778	495.8069614829561	143.45	1.4815	143.22	142.7	144.19	-0.22696					60	29	3	0	0	0	0.7044	1	14398	14398		16.473	1.809	1	72131	+		62381	20915	51439	51489	68494	68494					0.10296253945762146
VSAYFREQ	8	Unmodified	_VSAYFREQ_					0	0	0			REV__nc|ENSG00000187258|Q6W5P4-2|NPSR1	REV__nc|ENSG00000187258|Q6W5P4-2|NPSR1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.29168701171875	2	500.248349	998.482145	2.0194	0.0010102	0.47161	0.00023592	2.491	0.0012461	500.2484151502088	106.63	0.31265	106.63	106.45	106.76	0					10	6	2	0	0	0	0.028476	1	11988	11988		58.782	12.016	1	144580	+		62382	22638	51440	51490	68495	68495					-0.017156896249503006
VSCVLVPPP	9	Unmodified	_VSCVLVPPP_					0	0	0		ENST00000371521.8_3_9:140111080-140111233:+|nuORF	ENST00000371521.8_3_9:140111080-140111233:+|nuORF	ENST00000371521.8_3_9:140111080-140111233:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.236328125	2	455.756964	909.499375	-0.24256	-0.00011055	4.374	0.0019935	4.1314	0.0018829	455.75875538089144	42.643	0.59809	42.643	42.372	42.97	0					27	13	3	0	0	0	0.027462	1	2738	2738		31.955	0	1	477270			62383	10958	51441	51491	68496	68496					0.04100514656499854
VSDFFEKQR	9	Unmodified	_VSDFFEKQR_					0	0	0			REV__ENSG00000124831|ENST00000308482|LRRFIP1	REV__ENSG00000124831|ENST00000308482|LRRFIP1	MULTI-MSMS	OvCa9_classI_Rep2	2	578.2893676757812	2	578.293288	1154.57202	-5.4888	-0.0031741	-0.73844	-0.00042704	-6.2272	-0.0036012	578.2927598597663	159.22	4.1126	158.99	158.53	162.64	-0.22697					262	82	5	0	0	0	0.12515	2	16208	16208;16290		90.37	24.567	1	1073400	+		62384	16301	51442	51492	68497;68498	68497					0.0009193998362206912
VSDFFEKQR	9	Unmodified	_VSDFFEKQR_					0	0	0			REV__ENSG00000124831|ENST00000308482|LRRFIP1	REV__ENSG00000124831|ENST00000308482|LRRFIP1	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2894897460938	2	578.293288	1154.57202	-7.6021	-0.0043963	1.2846	0.00074285	-6.3176	-0.0036534	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.40667	1	13971	13971		51.335	0	1	1429200	+		62385	16301	51442	51492	68499	68499					0.0009193998362206912
VSDFFEKQR	9	Unmodified	_VSDFFEKQR_					0	0	0			REV__ENSG00000124831|ENST00000308482|LRRFIP1	REV__ENSG00000124831|ENST00000308482|LRRFIP1	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.288818359375	2	578.293288	1154.57202	-7.0222	-0.0040609	1.1968	0.00069209	-5.8254	-0.0033688	578.293831134244	164.09	0.43207	162.46	162.1	162.53	-1.6336					20	10	2	0	0	0	0.62352	1	16197	16197		29.15	3.5755	1	95513	+		62386	16301	51442	51492	68500	68500					0.0009193998362206912
VSDKAGLAR	9	Unmodified	_VSDKAGLAR_					0	0	0		ENST00000563592.5_1_15:73075466-73075571:+|nuORF	ENST00000563592.5_1_15:73075466-73075571:+|nuORF	ENST00000563592.5_1_15:73075466-73075571:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	458.28472900390625	2	458.764166	915.513779	0.43165	0.00019803	3.8723	0.0017765	4.304	0.0019745	458.7656800094569	93.605	0.94057	92.437	92.105	93.046	-1.168					26	17	3	0	0	0	0.027462	1	8335	8335		23.042	1.0826	1	34589			62387	13788	51443	51493	68501	68501					0.052643031289903774
VSDKAGLAR	9	Unmodified	_VSDKAGLAR_					0	0	0		ENST00000563592.5_1_15:73075466-73075571:+|nuORF	ENST00000563592.5_1_15:73075466-73075571:+|nuORF	ENST00000563592.5_1_15:73075466-73075571:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	458.764166	915.513779	-0.72699	-0.00033352	4.9705	0.0022803	4.2435	0.0019468	458.76625184029405	94.346	0.70988	92.451	92.204	92.914	-1.8956	-0.020828	0.00042227	NaN	21.96	26	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	56449			62388	13788	51443	51493							0.052643031289903774
VSDLKHTQ	8	Unmodified	_VSDLKHTQ_					0	0	0			REV__NCOA6|p.A1848Wfs*4|1|0.09|ENSG00000198646|chr20:34740711-34740715|CTGCA/-|frameshift_variant	REV__NCOA6|p.A1848Wfs*4|1|0.09|ENSG00000198646|chr20:34740711-34740715|CTGCA/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.2772521972656	2	464.248349	926.482145	-0.68142	-0.00031635	0.94772	0.00043998	0.26631	0.00012363	464.24862243092025	35.028	0.52142	35.028	34.818	35.339	0					21	10	3	0	0	0	0.028476	1	1751	1751		65.803	14.468	1	214880	+		62389	23040	51444	51494	68502	68502					0.01596310375032317
VSDPQQHE	8	Unmodified	_VSDPQQHE_					0	0	0		nc|ENSG00000215695|Q92681|RSC1A1	nc|ENSG00000215695|Q92681|RSC1A1	nc|ENSG00000215695|Q92681|RSC1A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.2108459472656	2	470.211963	938.409374	0.76716	0.00036073	-2.6609	-0.0012512	-1.8938	-0.00089046	470.21060850617636	112.48	1.7553	110.97	110.42	112.18	-1.5111					84	34	4	0	0	0	0.68714	1	10408	10408		45.952	1.4209	1	831100			62390	15317	51445	51495	68503	68503					-0.06229443418374103
VSDQKLFNP	9	Unmodified	_VSDQKLFNP_					0	0	0			REV__nc|ENSG00000144395|Q8NCX0-2|CCDC150	REV__nc|ENSG00000144395|Q8NCX0-2|CCDC150	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.2764282226562	2	524.277106	1046.53966	-1.4064	-0.00073734	0.69358	0.00036363	-0.71282	-0.00037371	524.2773318859194	41.29	2.6423	38.309	37.763	40.405	-2.9804					91	50	4	0	0	0	0.18193	1	1831	1831		79.451	7.5735	1	1482900	+		62391	28905	51446	51496	68504	68504					0.01825152580613576
VSDSGHIVN	9	Unmodified	_VSDSGHIVN_					0	0	0			REV__tr|A0A553SL63|A0A553SL63_NIACINucleosidediphosphatekinaseOS=NialliacirculansOX=1397GN=ndkPE=3SV=1	REV__tr|A0A553SL63|A0A553SL63_NIACINucleosidediphosphatekinaseOS=NialliacirculansOX=1397GN=ndkPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.7883605957031	2	464.230156	926.445759	-0.83008	-0.00038535	-4.4611	-0.002071	-5.2912	-0.0024563	464.2280562592162	52.75	0.69684	49.542	49.247	49.944	-3.208					18	13	2	0	0	0	0.027418	1	3219	3219		49.442	8.6634	1	33531	+		62392	30192	51447	51497	68505	68505					-0.02040566521668552
VSEHHQHS	8	Unmodified	_VSEHHQHS_					0	0	0		ENST00000515394.1_1_5:176963357-176964967:-|nuORF;ENST00000506955.5_1_5:176959168-176966109:-|nuORF;ENSG00000146067|ENST00000514747|FAM193B;nc|ENSG00000146067|Q96PV7|FAM193B	ENST00000515394.1_1_5:176963357-176964967:-|nuORF	ENST00000515394.1_1_5:176963357-176964967:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.249755859375	2	480.717747	959.420942	0.35537	0.00017083	-2.7294	-0.0013121	-2.374	-0.0011412	480.7159967066035	122.95	0.64533	121.58	121.26	121.9	-1.3666					17	12	2	0	0	0	0.028476	1	11644	11644		7.6903	0	1	8474.1			62393	5262	51448	51498	68506	68506					-0.06039201604380651
VSEHSRLLSL	10	Unmodified	_VSEHSRLLSL_					0	0	0		PLXNA2|p.A1834Efs*28|1|0.04|ENSG00000076356|chr1:208028099-208028100|-/CTGCCGCCGTGCCTGCTCATCCTGCTCT|frameshift_variant;ENSG00000076356|ENST00000367033|PLXNA2	PLXNA2|p.A1834Efs*28|1|0.04|ENSG00000076356|chr1:208028099-208028100|-/CTGCCGCCGTGCCTGCTCATCCTGCTCT|frameshift_variant	PLXNA2|p.A1834Efs*28|1|0.04|ENSG00000076356|chr1:208028099-208028100|-/CTGCCGCCGTGCCTGCTCATCCTGCTCT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	570.8236083984375	2	570.822212	1139.62987	-0.84189	-0.00048057	0.42966	0.00024526	-0.41223	-0.00023531	570.8223479788066	81.337	1.9092	79.015	78.594	80.503	-2.3226					88	37	3	0	0	0	0.1722	1	4509	4509		98.629	10.933	1	1098200			62394	1556	51449	51499	68507	68507					0.06564201909054646
VSEKDRMAL	9	Unmodified	_VSEKDRMAL_					0	0	0		tr|A0A7D6ZU35|A0A7D6ZU35_9CLOTPeptidoglycan-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22590PE=4SV=1	tr|A0A7D6ZU35|A0A7D6ZU35_9CLOTPeptidoglycan-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22590PE=4SV=1	tr|A0A7D6ZU35|A0A7D6ZU35_9CLOTPeptidoglycan-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_22590PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.2778930664062	2	524.776416	1047.53828	-1.5461	-0.00081136	1.7827	0.0009355	0.23656	0.00012414	524.777074109305	42.512	1.4463	39.532	39.011	40.458	-2.9804					89	27	6	0	0	0	0.48324	1	1985	1985		44.117	1.6423	1	359970			62395	35765	51450	51500	68508	68508					0.01641195220213376
VSELERSH	8	Unmodified	_VSELERSH_					0	0	0			REV__nc|ENSG00000174840|Q6L8Q7-2|PDE12	REV__nc|ENSG00000174840|Q6L8Q7-2|PDE12	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.2613220214844	2	478.743431	955.472308	-0.43059	-0.00020614	0.47043	0.00022522	0.039843	1.9075E-05	478.7434729307665	36.066	0.72959	36.066	35.846	36.575	0					26	15	3	0	0	0	0.028476	1	1873	1873		26.796	0	1	259680	+		62396	21855	51451	51501	68509	68509					-0.007208776303173181
VSELGPIGIL	10	Unmodified	_VSELGPIGIL_					0	0	0			REV__ENSG00000171944|ENST00000307388|OR52A5	REV__ENSG00000171944|ENST00000307388|OR52A5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.77191162109375	2	499.30005	996.585547	-0.59129	-0.00029523	0.88041	0.00043959	0.28911	0.00014435	499.3001408588967	103.34	1.728	101.14	100.15	101.88	-2.1994					51	32	3	0	0	0	0.026612	1	9226	9226		65.803	21.686	1	26940	+		62397	21662	51452	51502	68510	68510					0.08711797762850892
VSELKEGAI	9	Unmodified	_VSELKEGAI_					0	0	0		ENST00000536241.1_1_12:6958209-6958627:-|nuORF;ENST00000544610.1_1_12:6958209-6958939:-|nuORF;chr12:6849783-6850467|415|13.11|0.36|5.18|-|ENST00000229265|CDCA3,CDCA3;ENSG00000111665|ENST00000538862|CDCA3	ENST00000536241.1_1_12:6958209-6958627:-|nuORF	ENST00000536241.1_1_12:6958209-6958627:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.267578125	2	473.266207	944.517862	0.3521	0.00016664	-0.89076	-0.00042157	-0.53865	-0.00025493	473.2657238801001	79.441	1.004	76.69	76.322	77.326	-2.7514					57	20	4	0	0	0	0.041116	1	6446	6446		125.81	0	1	495860			62398	331	51453	51503	68511	68511					0.04338347832049294
VSELRPIL	8	Unmodified	_VSELRPIL_					0	0	0		nc|ENSG00000065357|P23743-3|DGKA;ENST00000552687.6_1_12:56332455-56333318:+|nuORF;ENST00000551296.5_1_12:56330769-56334129:+|nuORF;ENST00000549097.5_1_12:56325880-56333318:+|nuORF;ENST00000551739.5_1_12:56332068-56333318:+|nuORF;ENST00000547358.5_1_12:56325089-56334578:+|nuORF;ENSG00000065357|ENST00000331886|DGKA	nc|ENSG00000065357|P23743-3|DGKA	nc|ENSG00000065357|P23743-3|DGKA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.7654113769531	2	463.78711	925.559667	-1.0398	-0.00048224	0.81131	0.00037628	-0.22847	-0.00010596	463.7873861971096	53.027	1.1575	49.819	49.553	50.71	-3.208					41	22	2	0	0	0	0.028476	1	3299	3299		31.955	0	1	392140			62399	14884	51454	51504	68512	68512					0.09390948311227021
VSELTIIKE	9	Unmodified	_VSELTIIKE_					0	0	0		nc|ENSG00000163491|Q6ZWH5-4|NEK10;nc|ENSG00000163491|Q6ZWH5-2|NEK10;ENSG00000163491|ENST00000691995|NEK10;nc|ENSG00000163491|Q6ZWH5|NEK10	nc|ENSG00000163491|Q6ZWH5-4|NEK10	nc|ENSG00000163491|Q6ZWH5-4|NEK10	MULTI-MSMS	OvCa9_classI_Rep2	2	516.302490234375	2	516.30279	1030.59103	-1.3641	-0.00070426	1.9153	0.00098889	0.55128	0.00028463	516.3037096883031	61.9	2.366	59.14	58.568	60.934	-2.7593					127	45	4	0	0	0	0.31747	1	4648	4648		60.972	2.19	1	1077700			62400	6316	51455	51505	68513	68513					0.07695476554658853
VSERLHIEV	9	Unmodified	_VSERLHIEV_					0	0	0			REV__ENSG00000171467|ENST00000361428|ZNF318	REV__ENSG00000171467|ENST00000361428|ZNF318	MULTI-MSMS	OvCa99_classI_Rep5	1	541.3052978515625	2	541.303655	1080.59276	0.54127	0.00029299	0.31127	0.00016849	0.85254	0.00046148	541.3035987536223	74.184	1.2202	74.184	73.907	75.128	0					70	30	4	0	0	0	0.24899	1	7338	7338		68.846	8.7279	1	10566000	+		62401	21615	51456	51506	68514	68514					0.055685303633026706
VSESVEIKPL	10	Unmodified	_VSESVEIKPL_					0	0	0			REV__ENSG00000094975|ENST00000263688|SUCO	REV__ENSG00000094975|ENST00000263688|SUCO	MULTI-MSMS	OvCa9_classI_Rep2	2	550.8135986328125	2	550.813522	1099.61249	0.44129	0.00024307	-0.87894	-0.00048413	-0.43765	-0.00024106	550.8129439494999	106.56	1.7676	106.25	105.88	107.64	-0.30836					58	35	2	0	0	0	0.52439	1	9929	9929		51.193	0	1	234630	+		62402	17280	51457	51507	68515	68515					0.06666861583380523
VSFEKADLSL	10	Unmodified	_VSFEKADLSL_					0	0	0			REV__ENST00000490838.6_1_20:3190141-3193989:+|nuORF	REV__ENST00000490838.6_1_20:3190141-3193989:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	554.7992553710938	2	554.797872	1107.58119	-1.2293	-0.00068202	0.45215	0.00025085	-0.77717	-0.00043117	554.7978766641985	117.1	2.2786	116.07	115.75	118.02	-1.0324					77	36	3	0	0	0	0.52162	1	8772	8772		51.528	0.1923	1	174560	+		62403	26660	51458	51508	68516	68516					0.031702885492677524
VSFFIGIIW	9	Unmodified	_VSFFIGIIW_					0	0	0			REV__L1MEf_dup6140|chr8:143855850-143856370:+|1.5610221762686003|0.2389077802373403|2.71|429.0|28|2|anti-sense	REV__L1MEf_dup6140|chr8:143855850-143856370:+|1.5610221762686003|0.2389077802373403|2.71|429.0|28|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.7857055664062	2	541.307678	1080.6008	-1.0191	-0.00055164	-1.7562	-0.00095067	-2.7753	-0.0015023	541.3054997658251	91.248	1.2225	88.705	88.04	89.262	-2.5425					39	23	3	0	0	0	0.027462	1	7909	7909		42.474	0	1	53481	+		62404	28447	51459	51509	68517	68517					0.06372709350694095
VSFLIKLSVD	10	Unmodified	_VSFLIKLSVD_					0	0	0			REV__ENST00000537473.2_1_12:57059942-57081218:-|nuORF	REV__ENST00000537473.2_1_12:57059942-57081218:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.29248046875	2	560.834257	1119.65396	3.1778	0.0017822	-1.7953	-0.0010068	1.3825	0.00077536	560.8330571411072	102.27	0.42275	102.27	102.12	102.55	0					11	9	2	0	0	0	0.027001	1	11383	11383		21.686	13.451	1	210890	+		62405	27308	51460	51510	68518	68518					0.09892042342721652
VSFLSAGQT	9	Unmodified	_VSFLSAGQT_					0	0	0			REV__ENSG00000122194|ENST00000308192|PLG	REV__ENSG00000122194|ENST00000308192|PLG	MULTI-SECPEP	OvCa99_classI_Rep5	1	454.7834777832031	2	455.23745	908.460347	-0.84886	-0.00038643	1.2881	0.00058637	0.4392	0.00019994	455.2378650845512	69.921	0.33394	69.921	69.712	70.046	0					13	7	2	0	0	0	0.027448	1	6682	6682		27.882	0	1	244840	+		62406	18582	51461	51511	68519	68519					0.002455056264693667
VSFPCLPAQ	9	Unmodified	_VSFPCLPAQ_					0	0	0			REV__ENST00000413379.7_1_19:47712635-47712935:+|nuORF	REV__ENST00000413379.7_1_19:47712635-47712935:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.26776123046875	2	481.244221	960.473888	-0.54113	-0.00026041	4.3323	0.0020849	3.7911	0.0018245	481.24597052901265	52.608	0.45469	49.4	49.196	49.651	-3.208					10	8	2	0	0	0	0.02741	1	3173	3173		34.173	0	1	15305	+		62407	25511	51462	51512	68520	68520					-0.007929598659302428
VSFQKRIAD	9	Unmodified	_VSFQKRIAD_					0	0	0		ENST00000493787.5_1_10:75082782-75108210:-|nuORF;CFAP70|p.E930Nfs*32|1|0.04|ENSG00000156042|chr10:73275541-73275541|C/-|frameshift_variant;nc|ENSG00000156042|Q5T0N1-2|CFAP70;nc|ENSG00000156042|Q5T0N1|CFAP70;ENSG00000156042|ENST00000355577|CFAP70	ENST00000493787.5_1_10:75082782-75108210:-|nuORF	ENST00000493787.5_1_10:75082782-75108210:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.2755126953125	2	532.298373	1062.58219	1.892	0.0010071	-0.59686	-0.00031771	1.2952	0.00068942	532.2979529108566	77.694	0.7121	77.694	77.381	78.093	0					22	16	2	0	0	0	0.027462	1	7871	7871		32.812	0	1	315060			62408	229	51463	51513	68521	68521					0.05340547708851773
VSGAERILK	9	Unmodified	_VSGAERILK_					0	0	0			REV__nc|ENSG00000152683|Q6NXT4-3|SLC30A6	REV__nc|ENSG00000152683|Q6NXT4-3|SLC30A6	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.79681396484375	2	486.795466	971.57638	-0.83836	-0.00040811	0.27461	0.00013368	-0.56375	-0.00027443	486.79569045985966	53.777	1.0729	50.529	50.263	51.336	-3.2474					49	20	3	0	0	0	0.24951	1	3305	3305		68.787	0.30212	1	211880	+		62409	28934	51464	51514	68522	68522					0.08945449197199196
VSGAERILK	9	Unmodified	_VSGAERILK_					0	0	0			REV__nc|ENSG00000152683|Q6NXT4-3|SLC30A6	REV__nc|ENSG00000152683|Q6NXT4-3|SLC30A6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	486.795466	971.57638	-0.97556	-0.0004749	0.69292	0.00033731	-0.28264	-0.00013759	486.7956992477278	53.493	0.99523	50.679	50.379	51.375	-2.8139	0.074989	0.00014243	NaN	68.787	33	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48490	+		62410	28934	51464	51514							0.08945449197199196
VSGAERILK	9	Unmodified	_VSGAERILK_					0	0	0			REV__nc|ENSG00000152683|Q6NXT4-3|SLC30A6	REV__nc|ENSG00000152683|Q6NXT4-3|SLC30A6	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	486.795466	971.57638	-0.83836	-0.00040811	0.27461	0.00013368	-0.56375	-0.00027443	486.79569045985966	53.777	1.0729	50.529	50.263	51.336	-3.2474	-0.074989	-0.00026483	NaN	68.787	49	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	211880	+		62411	28934	51464	51514							0.08945449197199196
VSGDILEKL	9	Unmodified	_VSGDILEKL_					0	0	0			REV__tr|A0A7D6VNS2|A0A7D6VNS2_9CLOTProteintranslocasesubunitSecAOS=ClostridiumintestinaleOX=36845GN=secAPE=3SV=1	REV__tr|A0A7D6VNS2|A0A7D6VNS2_9CLOTProteintranslocasesubunitSecAOS=ClostridiumintestinaleOX=36845GN=secAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.2823486328125	2	487.281857	972.549162	0.31716	0.00015454	-1.3078	-0.00063728	-0.99067	-0.00048274	487.2812648001119	98.127	3.3235	95.748	95.216	98.54	-2.3786					197	64	5	0	0	0	0.33652	1	8794	8794		58.782	0.97068	1	10553000	+		62412	31203	51465	51515	68523	68523					0.06178920866148019
VSGFLITKV	9	Unmodified	_VSGFLITKV_					0	0	0		tr|A0A553SS00|A0A553SS00_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_02145PE=4SV=1	tr|A0A553SS00|A0A553SS00_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_02145PE=4SV=1	tr|A0A553SS00|A0A553SS00_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_02145PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	482.2966003417969	2	482.29731	962.580068	1.5127	0.00072959	0.56166	0.00027089	2.0744	0.0010005	482.2974046087433	81.711	1.2791	81.711	81.329	82.609	0					74	30	4	0	0	0	0.23241	1	8454	8454		70.816	1.9701	1	2955400			62413	34318	51466	51516	68524	68524					0.09728118971031563
VSGFMIIT	8	Unmodified	_VSGFMIIT_					0	0	0		tr|A0A553SIJ4|A0A553SIJ4_NIACIAcyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_15005PE=3SV=1	tr|A0A553SIJ4|A0A553SIJ4_NIACIAcyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_15005PE=3SV=1	tr|A0A553SIJ4|A0A553SIJ4_NIACIAcyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_15005PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	434.26220703125	2	434.235864	866.457176	0.43718	0.00018984	4.3924	0.0019073	4.8296	0.0020972	434.2376870618396	47.062	0.70566	47.062	46.631	47.336	0					20	15	2	0	0	0	0.028476	1	3343	3343		16.473	11.791	1	197870			62414	33387	51467	51517	68525	68525					0.018605392481163108
VSGGVLATDL	10	Unmodified	_VSGGVLATDL_					0	0	0		ENST00000497571.5_1_10:3824338-3827372:-|nuORF	ENST00000497571.5_1_10:3824338-3827372:-|nuORF	ENST00000497571.5_1_10:3824338-3827372:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.7392578125	2	466.258382	930.502212	-0.0092153	-4.2967E-06	3.6098	0.0016831	3.6006	0.0016788	466.2593648447473	60.708	0.46364	60.708	60.352	60.816	0					15	10	2	0	0	0	0.026891	1	5281	5281		24.519	0	1	76775			62415	12811	51468	51518	68526	68526					0.03418061315016985
VSGIILVGLG	10	Unmodified	_VSGIILVGLG_					0	0	0		nc|ENSG00000130167|Q9UKR8-4|TSPAN16;nc|ENSG00000130167|Q9UKR8-3|TSPAN16;ENSG00000130167|ENST00000590327|TSPAN16;nc|ENSG00000130167|Q9UKR8|TSPAN16	nc|ENSG00000130167|Q9UKR8-4|TSPAN16	nc|ENSG00000130167|Q9UKR8-4|TSPAN16	MULTI-MSMS	OvCa9_classI_Rep4_	4	464.2973327636719	2	464.29731	926.580068	-1.842	-0.00085524	1.6778	0.00077898	-0.16424	-7.6257E-05	464.29795531086324	107.16	1.5039	105.28	104.96	106.46	-1.8785					60	29	3	0	0	0	0.22395	1	9774	9774		90.777	0.40684	1	205120			62416	3961	51469	51519	68527	68527					0.11384118971045609
VSGIILVGLG	10	Unmodified	_VSGIILVGLG_					0	0	0		nc|ENSG00000130167|Q9UKR8-4|TSPAN16;nc|ENSG00000130167|Q9UKR8-3|TSPAN16;ENSG00000130167|ENST00000590327|TSPAN16;nc|ENSG00000130167|Q9UKR8|TSPAN16	nc|ENSG00000130167|Q9UKR8-4|TSPAN16	nc|ENSG00000130167|Q9UKR8-4|TSPAN16	MULTI-MATCH	OvCa9_classI_Rep2	2		2	464.29731	926.580068	-0.35938	-0.00016686	0.39267	0.00018231	0.033284	1.5454E-05	464.2973403806095	105.71	1.3464	105.27	105	106.35	-0.43642	0.0081814	-0.00020222	NaN	90.777	54	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	185080			62417	3961	51469	51519							0.11384118971045609
VSGIILVGLG	10	Unmodified	_VSGIILVGLG_					0	0	0		nc|ENSG00000130167|Q9UKR8-4|TSPAN16;nc|ENSG00000130167|Q9UKR8-3|TSPAN16;ENSG00000130167|ENST00000590327|TSPAN16;nc|ENSG00000130167|Q9UKR8|TSPAN16	nc|ENSG00000130167|Q9UKR8-4|TSPAN16	nc|ENSG00000130167|Q9UKR8-4|TSPAN16	MULTI-MATCH	OvCa9_classI_Rep3	3		2	464.29731	926.580068	0.32965	0.00015306	-0.40564	-0.00018834	-0.075983	-3.5279E-05	464.29700446893895	106.51	1.4574	105.24	105.01	106.47	-1.267	-0.022334	-0.00094352	NaN	90.777	60	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	215790			62418	3961	51469	51519							0.11384118971045609
VSGKPLLI	8	Unmodified	_VSGKPLLI_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	413.77447509765625	2	413.773471	825.53239	0.36793	0.00015224	-0.33141	-0.00013713	0.03652	1.5111E-05	413.7731798573112	83.482	1.4272	80.82	80.534	81.961	-2.6629					69	29	4	0	0	0	0.27528	1	6946	6946		111.65	14.176	1	412810			62419	5199	51470	51520	68528	68528					0.112644647708521
VSGKPLLI	8	Unmodified	_VSGKPLLI_					0	0	0		ENSG00000145041|ENST00000684031|DCAF1;nc|ENSG00000145041|Q9Y4B6-2|DCAF1;nc|ENSG00000145041|Q9Y4B6-3|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	ENSG00000145041|ENST00000684031|DCAF1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	413.773471	825.53239	1.1556	0.00047815	-1.0563	-0.00043706	0.099309	4.1091E-05	413.7729081267688	82.456	1.7348	80.858	80.436	82.171	-1.5988	0.01899	-0.00016863	NaN	111.65	74	34	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	297980			62420	5199	51470	51520							0.112644647708521
VSGLGIGKKV	10	Unmodified	_VSGLGIGKKV_					0	0	0			REV__ENST00000511682.1_1_4:169819766-169825111:+|nuORF	REV__ENST00000511682.1_1_4:169819766-169825111:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.2744140625	2	479.30821	956.601866	-0.47656	-0.00022842	-1.4035	-0.00067273	-1.8801	-0.00090115	479.3076090382152	80.007	0.49097	77.256	77.034	77.525	-2.7514					18	9	3	0	0	0	0.026915	1	6517	6517		14.865	0.72775	1	28793	+		62421	26963	51471	51521	68529	68529					0.12182923719615246
VSGLIRPSAL	10	Unmodified	_VSGLIRPSAL_					0	0	0		ENST00000448549.1_1_7:23571439-23571577:-|nuORF	ENST00000448549.1_1_7:23571439-23571577:-|nuORF	ENST00000448549.1_1_7:23571439-23571577:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	506.81201171875	2	506.811116	1011.60768	-0.96963	-0.00049142	-0.36531	-0.00018514	-1.3349	-0.00067656	506.8110395873254	89.248	2.4224	87.118	86.702	89.124	-2.1309					173	47	5	0	0	0	0.44431	1	5506	5506		62.107	5.3864	1	9108500			62422	12021	51472	51522	68530	68530					0.10234022231270501
VSGLNYILP	9	Unmodified	_VSGLNYILP_					0	0	0			REV__ENST00000351842.8_1_3:49348069-49362135:-|nuORF	REV__ENST00000351842.8_1_3:49348069-49362135:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	487.2823181152344	2	488.279118	974.543683	-1.4355	-0.00070094	2.6584	0.001298	1.2228	0.00059709	488.2799317521328	83.511	0.36697	81.25	81.067	81.434	-2.261					12	7	2	0	0	0	0.027462	1	4755	4755		18.324	0.95945	1	26506	+		62423	24032	51473	51523	68531	68531					0.055392420743373805
VSGLTSFLPI	10	Unmodified	_VSGLTSFLPI_					0	0	0		ENSG00000169252|ENST00000305988|ADRB2	ENSG00000169252|ENST00000305988|ADRB2	ENSG00000169252|ENST00000305988|ADRB2	MULTI-MSMS	OvCa9_classI_Rep2	2	517.2991943359375	2	517.30005	1032.58555	-0.97738	-0.0005056	0.77818	0.00040255	-0.19919	-0.00010304	517.3002641504664	117.39	1.7876	117.26	116.96	118.75	-0.12869					61	35	4	0	0	0	0.3976	1	11244	11244		68.787	8.6686	1	137800			62424	6995	51474	51524	68532	68532					0.07055797762859584
VSGPERTI	8	Unmodified	_VSGPERTI_					0	0	0		CRYAB|p.Q151R|1|0.4|ENSG00000109846|chr11:111908840-111908840|T/C|missense_variant;ENSG00000109846|ENST00000650687|CRYAB	CRYAB|p.Q151R|1|0.4|ENSG00000109846|chr11:111908840-111908840|T/C|missense_variant	CRYAB|p.Q151R|1|0.4|ENSG00000109846|chr11:111908840-111908840|T/C|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	429.7376403808594	2	429.737617	857.460681	0.040641	1.7465E-05	0.02732	1.174E-05	0.067961	2.9205E-05	429.73751104311236	47.141	1.1351	47.141	46.719	47.854	0					63	25	4	0	0	0	0.27103	2	3365	3365;3392		112.41	16.22	1	2356000			62425	681	51475	51525	68533;68534	68533					0.026249253463333844
VSGPNKIILT	10	Unmodified	_VSGPNKIILT_					0	0	0		ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	ENSG00000132518|ENST00000254854|GUCY2D	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.3222045898438	2	521.318774	1040.623	-0.15243	-7.9463E-05	-0.28998	-0.00015117	-0.4424	-0.00023063	521.3184805483002	59.757	1.3046	56.987	56.514	57.819	-2.7702					60	24	4	0	0	0	0.026782	1	4338	4338		45.972	18.09	1	205210			62426	4144	51476	51526	68535	68535					0.10430889028475576
VSGQVLELEVE	11	Unmodified	_VSGQVLELEVE_					0	0	0		ENST00000596161.5_1_19:46506270-46506498:+|nuORF;nc|ENSG00000104983|Q9Y6R9-2|CCDC61;ENSG00000104983|ENST00000595358|CCDC61	ENST00000596161.5_1_19:46506270-46506498:+|nuORF	ENST00000596161.5_1_19:46506270-46506498:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	602.3157958984375	2	601.319168	1200.62378	0.16207	9.7458E-05	1.0859	0.00065296	1.248	0.00075042	601.8221433121192	56.8	0.29553	56.8	56.623	56.918	0					11	6	2	0	0	0	0.025404	1	4734	4734		36.447	11.928	1	162240			62427	2416	51477	51527	68536	68536					0.03149638886839057
VSGQWEVVT	9	Unmodified	_VSGQWEVVT_					0	0	0		nc|ENSG00000010932|Q01740-2|FMO1;ENSG00000010932|ENST00000617670|FMO1	nc|ENSG00000010932|Q01740-2|FMO1	nc|ENSG00000010932|Q01740-2|FMO1	MULTI-SECPEP	OvCa9_classI_Rep3	3	502.2882080078125	2	502.756007	1003.49746	-1.437	-0.00072246	1.5406	0.00077456	0.10362	5.2097E-05	502.75663813361297	84.164	1.0484	81.903	81.655	82.704	-2.261					59	21	4	0	0	0	0.027453	1	4952	4952		30.318	1.1682	1	357450			62428	951	51478	51528	68537	68537					-0.004148228277585986
VSGRILVV	8	Unmodified	_VSGRILVV_					0	0	0		ENSG00000196976|ENST00000357360|LAGE3	ENSG00000196976|ENST00000357360|LAGE3	ENSG00000196976|ENST00000357360|LAGE3	MULTI-MSMS	OvCa9_classI_Rep2	2	421.77606201171875	2	421.776545	841.538538	0.086702	3.6569E-05	0.18542	7.8206E-05	0.27212	0.00011478	421.7764659786005	83.159	2.3285	81.56	81.167	83.495	-1.5988					97	46	3	0	0	0	0.57734	3	7129	7123;7129;7135		68.787	15.435	1	563820			62429	8668	51479	51529	68538;68539;68540	68539					0.1114298300237806
VSGRILVV	8	Unmodified	_VSGRILVV_					0	0	0		ENSG00000196976|ENST00000357360|LAGE3	ENSG00000196976|ENST00000357360|LAGE3	ENSG00000196976|ENST00000357360|LAGE3	MULTI-MSMS	OvCa9_classI_Rep4_	4	421.7771911621094	2	421.776545	841.538538	0.35255	0.0001487	-0.35346	-0.00014908	-0.00090843	-3.8315E-07	421.7762679282595	84.233	1.3292	81.571	81.314	82.643	-2.6629					67	27	3	0	0	0	0.38598	2	7039	7029;7039		90.777	16.802	1	773250			62430	8668	51479	51529	68541;68542	68542					0.1114298300237806
VSGRILVV	8	Unmodified	_VSGRILVV_					0	0	0		ENSG00000196976|ENST00000357360|LAGE3	ENSG00000196976|ENST00000357360|LAGE3	ENSG00000196976|ENST00000357360|LAGE3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	421.776545	841.538538	-0.34229	-0.00014437	0.28498	0.0001202	-0.057316	-2.4174E-05	421.7765590816636	83.585	2.0265	81.324	81.017	83.044	-2.261	-0.16087	8.513E-05	NaN	90.777	87	42	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	952320			62431	8668	51479	51529							0.1114298300237806
VSGRRHNA	8	Unmodified	_VSGRRHNA_					0	0	0		nc|ENSG00000151240|Q9Y2E4-2|DIP2C;DIP2C|p.H1289Tfs*13|1|0.09|ENSG00000151240|chr10:327065-327065|G/-|frameshift_variant;ENSG00000151240|ENST00000280886|DIP2C;ENSG00000066084|ENST00000301180|DIP2B	nc|ENSG00000151240|Q9Y2E4-2|DIP2C;ENSG00000066084|ENST00000301180|DIP2B	ENSG00000066084|ENST00000301180|DIP2B	MSMS	OvCa99_classI_Rep5	1	448.74603271484375	2	448.744099	895.473646	NaN	NaN	NaN	NaN	NaN	NaN	NaN	33.395	1	33.395	32.895	33.895	0								0	0	0	0.30129	1	1531	1531		33.516	3.0119	1				62432	1343;737	51480	51530	68543	68543					0.021728012490825677
VSGRRLGAR	9	Unmodified	_VSGRRLGAR_					0	0	0			REV__ENST00000495070.2_1_1:155959166-155959268:-|nuORF	REV__ENST00000495070.2_1_1:155959166-155959268:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	487.258544921875	2	486.296499	970.578445	-0.91913	-0.00044697	3.5319	0.0017175	2.6128	0.0012706	486.29806714948313	42.161	0.97417	39.181	38.906	39.88	-2.9804					44	18	3	0	0	0	0.027461	1	1955	1955		25.574	0	1	114230	+		62433	26739	51481	51531	68544	68544					0.09197922725661556
VSGRRLGAR	9	Unmodified	_VSGRRLGAR_					0	0	0			REV__ENST00000495070.2_1_1:155959166-155959268:-|nuORF	REV__ENST00000495070.2_1_1:155959166-155959268:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	486.296499	970.578445	1.1233	0.00054628	1.5021	0.00073044	2.6254	0.0012767	486.2971110515993	41.845	0.73973	39.136	38.931	39.67	-2.7097	-0.022482	-0.00070105	NaN	25.574	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19903	+		62434	26739	51481	51531							0.09197922725661556
VSGRRLSK	8	Unmodified	_VSGRRLSK_					0	0	0			REV__ENST00000409980.5_1_7:27824818-27824893:+|nuORF	REV__ENST00000409980.5_1_7:27824818-27824893:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	452.23016357421875	2	451.780151	901.545748	-0.33382	-0.00015081	-3.861	-0.0017443	-4.1948	-0.0018951	451.77877631997535	43.554	0.26215	40.546	40.431	40.693	-3.0074					6	4	2	0	0	0	0.028476	1	2093	2093		3.6843	0	1	8904.1	+		62435	25487	51482	51532	68545	68545					0.09103715602805096
VSGSLAEVEQL	11	Unmodified	_VSGSLAEVEQL_					0	0	0			REV__nc|ENSG00000184281|Q9Y5U2-2|TSSC4	REV__nc|ENSG00000184281|Q9Y5U2-2|TSSC4	MULTI-MSMS	OvCa9_classI_Rep2	2	566.296142578125	2	566.298236	1130.58192	-0.94412	-0.00053466	-0.19184	-0.00010864	-1.136	-0.00064329	566.2979066209101	99.965	2.3305	99.134	98.418	100.75	-0.83051					77	46	4	0	0	0	0.60323	1	9191	9191		44.377	3.599	1	343040	+		62436	22418	51483	51533	68546	68546					0.021850831983556418
VSGSVDVLIL	10	Unmodified	_VSGSVDVLIL_					0	0	0			REV__ENST00000461275.1_1_7:81680257-81714133:-|nuORF	REV__ENST00000461275.1_1_7:81680257-81714133:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	501.2972717285156	2	501.297507	1000.58046	-1.7009	-0.00085264	1.4294	0.00071655	-0.27147	-0.00013609	501.29808755011607	120.33	1.4803	120.16	119.84	121.32	-0.17137					84	29	5	0	0	0	0.53885	1	11647	11647		49.442	0	1	488720	+		62437	15730	51484	51534	68547	68547					0.08019493900246744
VSGSVPAARGA	11	Unmodified	_VSGSVPAARGA_					0	0	0			REV__ENSG00000161682|ENST00000293443|FAM171A2	REV__ENSG00000161682|ENST00000293443|FAM171A2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.7980041503906	2	486.267073	970.519593	-1.3647	-0.00066359	-2.2406	-0.0010895	-3.6053	-0.0017531	486.2661834082997	50.482	0.20724	47.34	47.236	47.444	-3.1416					5	3	2	0	0	0	0.025453	1	2897	2897		62.107	3.3255	1	6985.3	+		62438	20704	51485	51535	68548	68548					0.03315401640657001
VSGTARPGLV	10	Unmodified	_VSGTARPGLV_					0	0	0			REV__ENST00000245865.10_2_17:61780961-61781237:-|nuORF	REV__ENST00000245865.10_2_17:61780961-61781237:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.7810363769531	2	478.779816	955.545079	-0.59253	-0.00028369	-0.19842	-9.4998E-05	-0.79094	-0.00037869	478.7796788069989	55.63	1.4702	52.335	51.751	53.221	-3.2944					74	28	5	0	0	0	0.46756	1	3517	3517		58.782	0	1	1434900	+		62439	23837	51486	51536	68549	68549					0.06552876163095789
VSGVIVKII	9	Unmodified	_VSGVIVKII_					0	0	0		nc|ENSG00000174720|Q4G0J3-2|LARP7;ENSG00000174720|ENST00000344442|LARP7;nc|ENSG00000174720|Q4G0J3-3|LARP7	nc|ENSG00000174720|Q4G0J3-2|LARP7	nc|ENSG00000174720|Q4G0J3-2|LARP7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.2803039550781	2	464.315503	926.616454	-0.17445	-8.0999E-05	-4.0983	-0.0019029	-4.2728	-0.0019839	464.3135045412132	83.73	0.4371	81.068	80.73	81.167	-2.6629					10	8	2	0	0	0	0.027455	1	6973	6973		51.335	7.2187	1	9883.3			62440	7485	51487	51537	68550	68550					0.15020995867757847
VSGVKLDK	8	Unmodified	_VSGVKLDK_					0	0	0			REV__ENSG00000155363|ENST00000369645|MOV10	REV__ENSG00000155363|ENST00000369645|MOV10	MULTI-MSMS	OvCa99_classI_Rep5	1	423.2585754394531	2	423.258185	844.501818	-0.37634	-0.00015929	0.17524	7.4174E-05	-0.20109	-8.5115E-05	423.2581905661982	39.568	1.8175	39.568	39.332	41.149	0					108	40	4	0	0	0	0.47824	1	2383	2383		79.713	2.9384	1	10398000	+		62441	20422	51488	51538	68551	68551					0.07334686385809164
VSGVLRVL	8	Unmodified	_VSGVLRVL_					0	0	0			REV__ENSG00000112379|ENST00000251691|ARFGEF3	REV__ENSG00000112379|ENST00000251691|ARFGEF3	MULTI-MSMS	OvCa9_classI_Rep4_	4	421.7757568359375	2	421.776545	841.538538	0.35255	0.0001487	-0.35346	-0.00014908	-0.00090843	-3.8315E-07	421.7762679282595	84.233	1.3292	81.571	81.314	82.643	-2.6629					67	27	3	0	0	0	0.53531	2	7053	7053;7067		73.975	10.005	1	773250	+		62442	18098	51489	51539	68552;68553	68552					0.1114298300237806
VSGVVFTGLA	10	Unmodified	_VSGVVFTGLA_					0	0	0		tr|A0A553STI4|A0A553STI4_NIACIFormate/nitritetransporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05035PE=4SV=1	tr|A0A553STI4|A0A553STI4_NIACIFormate/nitritetransporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05035PE=4SV=1	tr|A0A553STI4|A0A553STI4_NIACIFormate/nitritetransporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_05035PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	475.2562561035156	2	475.271293	948.528032	0.64992	0.00030889	-3.4287	-0.0016296	-2.7788	-0.0013207	475.26974150766904	72.203	0.24854	72.203	72	72.249	0					8	5	2	0	0	0	0.026688	1	7001	7001		49.442	17.487	1	148050			62443	34491	51490	51540	68554	68554					0.05170955557287016
VSGYAKSETR	10	Unmodified	_VSGYAKSETR_					0	0	0			REV__nc|ENSG00000116809|Q13105-3|ZBTB17	REV__nc|ENSG00000116809|Q13105-3|ZBTB17	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.8036499023438	2	549.28292	1096.55129	-0.11995	-6.5885E-05	-3.906	-0.0021455	-4.026	-0.0022114	549.2804815103447	65.104	0.51059	65.104	64.875	65.385	0					28	12	3	0	0	0	0.026931	1	5939	5939		37.812	8.6415	1	1237900	+		62444	18321	51491	51541	68555	68555					0.006873496039588645
VSGYPTLKI	9	Unmodified	_VSGYPTLKI_					0	0	0		ENSG00000167004|ENST00000300289|PDIA3;ENST00000434494.5_1_15:44038867-44063413:+|nuORF;ENSG00000155660|ENST00000652332|PDIA4	ENSG00000167004|ENST00000300289|PDIA3;ENSG00000155660|ENST00000652332|PDIA4	ENSG00000167004|ENST00000300289|PDIA3	MULTI-SECPEP	OvCa99_classI_Rep5	1	489.2911682128906	2	489.286943	976.559333	1.8155	0.00088829	-0.99976	-0.00048917	0.81571	0.00039912	489.28547480636456	93.807	0.50385	93.807	93.59	94.094	0					19	11	2	0	0	0	0.027426	1	10214	10214		47.657	0	1	520780			62445	6746;5795	51492	51542	68556	68556					0.07011528591374372
VSGYYPIF	8	Unmodified	_VSGYYPIF_					0	0	0			REV__tr|A0A7D6ZZC8|A0A7D6ZZC8_9CLOTcysteinedesulfuraseOS=ClostridiumintestinaleOX=36845GN=HZF06_05595PE=3SV=1	REV__tr|A0A7D6ZZC8|A0A7D6ZZC8_9CLOTcysteinedesulfuraseOS=ClostridiumintestinaleOX=36845GN=HZF06_05595PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.28326416015625	2	473.239461	944.46437	0.62051	0.00029365	-4.2282	-0.002001	-3.6077	-0.0017073	473.23693299423456	78.049	0.58335	75.233	74.97	75.554	-2.8165					21	11	3	0	0	0	0.028476	1	6303	6303		46.766	5.9883	1	36893	+		62446	32406	51493	51543	68557	68557					-0.010084048798148615
VSHKEIAEN	9	Unmodified	_VSHKEIAEN_					0	0	0		tr|A0A553SP90|A0A553SP90_NIACIDihydroorotatedehydrogenaseB(NAD(+)),electrontransfersubunitOS=NialliacirculansOX=1397GN=pyrKPE=3SV=1	tr|A0A553SP90|A0A553SP90_NIACIDihydroorotatedehydrogenaseB(NAD(+)),electrontransfersubunitOS=NialliacirculansOX=1397GN=pyrKPE=3SV=1	tr|A0A553SP90|A0A553SP90_NIACIDihydroorotatedehydrogenaseB(NAD(+)),electrontransfersubunitOS=NialliacirculansOX=1397GN=pyrKPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	513.7642822265625	2	513.764363	1025.51417	-1.0386	-0.00053358	0.82385	0.00042326	-0.21472	-0.00011032	513.7646502151393	34.232	0.52085	34.232	34.065	34.586	0					19	10	2	0	0	0	0.53483	1	1639	1639		39.253	0	1	326300			62447	34018	51494	51544	68558	68558					0.0024367805820020294
VSHKRKTI	8	Unmodified	_VSHKRKTI_					0	0	0			REV__ENST00000399365.7_1_13:33780050-33780107:-|nuORF	REV__ENST00000399365.7_1_13:33780050-33780107:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	484.7752380371094	2	484.803626	967.592698	-0.8761	-0.00042474	-1.7617	-0.00085407	-2.6378	-0.0012788	484.8023800855427	92.667	0.76015	90.16	89.552	90.312	-2.5072					23	14	2	0	0	0	0.028476	1	8046	8046		25.45	0	1	45964	+		62448	25388	51495	51545	68559	68559					0.10760575153960872
VSHLGTLL	8	Unmodified	_VSHLGTLL_					0	0	0			REV__ENST00000532314.5_1_11:57413456-57414597:-|nuORF	REV__ENST00000532314.5_1_11:57413456-57414597:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	420.252197265625	2	420.252903	838.491253	0.57551	0.00024186	-0.53085	-0.00022309	0.04466	1.8769E-05	420.25256475380445	109.42	2.3842	108.27	107.88	110.26	-1.1444					107	45	4	0	0	0	0.64377	1	7860	7860		54.765	2.4655	1	608560	+		62449	27232	51496	51546	68560	68560					0.06554703731376321
VSHLLRTF	8	Unmodified	_VSHLLRTF_					0	0	0		ENST00000409185.5_1_2:131806798-131807053:-|nuORF	ENST00000409185.5_1_2:131806798-131807053:-|nuORF	ENST00000409185.5_1_2:131806798-131807053:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.2989196777344	2	486.784902	971.55525	0.062123	3.024E-05	-0.19275	-9.383E-05	-0.13063	-6.359E-05	486.7845305782906	64.509	1.2519	61.784	61.389	62.641	-2.7245					47	23	3	0	0	0	0.028476	1	4879	4879		24.203	4.8428	1	107640			62450	11516	51497	51547	68561	68561					0.0683348388831746
VSHNRLEAL	9	Unmodified	_VSHNRLEAL_					0	0	0		ENSG00000099769|ENST00000215539|IGFALS;nc|ENSG00000099769|P35858-2|IGFALS	ENSG00000099769|ENST00000215539|IGFALS	ENSG00000099769|ENST00000215539|IGFALS	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.2881469726562	2	519.788173	1037.56179	-0.32104	-0.00016687	-4.4669	-0.0023218	-4.7879	-0.0024887	519.7857617808224	78.247	0.38956	75.43	75.116	75.506	-2.8165					14	7	3	0	0	0	0.027462	1	6299	6299		42.396	9.5837	1	328020			62451	1975	51498	51548	68562	68562					0.04451377049053917
VSHQATHLV	9	Unmodified	_VSHQATHLV_					0	0	0			REV__ENST00000373313.2_1_20:39317299-39317872:-|nuORF	REV__ENST00000373313.2_1_20:39317299-39317872:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	496.2716979980469	2	496.269616	990.524678	0.34464	0.00017103	3.2988	0.0016371	3.6434	0.0018081	496.2711728280874	72.176	2.3532	69.669	69.277	71.631	-2.5071					78	44	4	0	0	0	0.22621	1	5837	5837		71.877	3.0906	1	799860	+		62452	25036	51499	51549	68563	68563					0.029037055032972603
VSHQATHLV	9	Unmodified	_VSHQATHLV_					0	0	0			REV__ENST00000373313.2_1_20:39317299-39317872:-|nuORF	REV__ENST00000373313.2_1_20:39317299-39317872:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	496.269616	990.524678	0.0093841	4.657E-06	4.355	0.0021613	4.3644	0.0021659	496.2714722147685	72.273	1.7816	69.671	69.328	71.11	-2.6023	0.0011552	0.00080824	NaN	71.877	71	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	129130	+		62453	25036	51499	51549							0.029037055032972603
VSHYTRTK	8	Unmodified	_VSHYTRTK_					0	0	0			REV__IGF2R|p.S1818Ifs*11|1|0.13|ENSG00000197081|chr6:160078335-160078336|-/AT|frameshift_variant	REV__IGF2R|p.S1818Ifs*11|1|0.13|ENSG00000197081|chr6:160078335-160078336|-/AT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	496.2716369628906	2	496.269616	990.524678	0.34464	0.00017103	3.2988	0.0016371	3.6434	0.0018081	496.2711728280874	72.176	2.3532	69.669	69.277	71.631	-2.5071					78	44	4	0	0	0	0.61436	1	5832	5832		60.972	4.2509	1	799860	+		62454	22890	51500	51550	68564	68564					0.029037055032972603
VSIATEPKL	9	Unmodified	_VSIATEPKL_					0	0	0			REV__ENST00000560168.1_1_19:46268761-46269535:-|nuORF	REV__ENST00000560168.1_1_19:46268761-46269535:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	479.28558349609375	2	479.2844	956.554247	0.14301	6.8543E-05	-0.67378	-0.00032293	-0.53077	-0.00025439	479.28388993219005	58.381	0.62226	58.381	58.112	58.734	0					32	14	3	0	0	0	0.19758	1	4963	4963		76.774	0	1	1657700	+		62455	21982	51501	51551	68565	68565					0.0742322472875685
VSICLWSSI	9	Unmodified	_VSICLWSSI_					0	0	0		ENST00000350721.8_1_3:142272141-142272192:-|nuORF	ENST00000350721.8_1_3:142272141-142272192:-|nuORF	ENST00000350721.8_1_3:142272141-142272192:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	504.2628173828125	2	504.265153	1006.51575	0.59616	0.00030062	0.60197	0.00030355	1.1981	0.00060418	504.26543043953114	160.15	0.44893	160.15	159.91	160.35	0					13	8	2	0	0	0	0.36502	1	18770	18770		55.504	0	1	54852			62456	10651	51502	51552	68566	68566					0.012755958225966424
VSIDSKAIVD	10	Unmodified	_VSIDSKAIVD_					0	0	0		nc|ENSG00000196924|P21333-2|FLNA;ENSG00000196924|ENST00000369850|FLNA;FLNA|p.H2029Qfs*32|1|0.9|ENSG00000196924|chrX:154353130-154353140|TGCTGGCCACG/-|frameshift_variant;FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant;FLNB|p.S2513Rfs*5|1|0.04|ENSG00000136068|chr3:58169710-58169711|-/GATTC|frameshift_variant;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;FLNB|p.T1593Ifs*40|1|0.08|ENSG00000136068|chr3:58136084-58136085|-/TCTATCAAGTC|frameshift_variant;FLNB|p.L1100Ffs*93|1|0.04|ENSG00000136068|chr3:58123263-58123263|C/-|frameshift_variant;ENSG00000128591|ENST00000325888|FLNC;nc|ENSG00000128591|Q14315-2|FLNC;FLNC|p.I2110Tfs*16|1|0.33|ENSG00000128591|chr7:128853588-128853591|ATCA/-|frameshift_variant	nc|ENSG00000196924|P21333-2|FLNA;FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant;ENSG00000128591|ENST00000325888|FLNC	nc|ENSG00000196924|P21333-2|FLNA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.8248291015625	2	523.790047	1045.56554	-1.2588	-0.00065932	0.62858	0.00032924	-0.63018	-0.00033008	523.7904471867978	81.275	0.63618	78.564	78.445	79.081	-2.7106					14	12	2	0	0	0	0.026464	1	6721	6721		79.713	26.776	1	50674			62457	8659;4455;3890	51503	51553	68567	68567					0.04458002032242803
VSIEPKNNN	9	Unmodified	_VSIEPKNNN_					0	0	0			REV__ENSG00000152818|ENST00000367545|UTRN	REV__ENSG00000152818|ENST00000367545|UTRN	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7627258300781	2	507.764363	1013.51417	-0.40189	-0.00020406	-2.1442	-0.0010888	-2.5461	-0.0012928	507.7630820065088	122.28	4.4632	120.91	119.72	124.19	-1.3666					201	87	4	0	0	0	0.50149	1	11632	11632		42.396	1.618	1	136110	+		62458	20306	51504	51554	68568	68568					0.007956780581821477
VSIKGKVFEL	10	Unmodified	_VSIKGKVFEL_					0	0	0		tr|A0A553SHG0|A0A553SHG0_NIACISporulationproteinYabPOS=NialliacirculansOX=1397GN=yabPPE=4SV=1	tr|A0A553SHG0|A0A553SHG0_NIACISporulationproteinYabPOS=NialliacirculansOX=1397GN=yabPPE=4SV=1	tr|A0A553SHG0|A0A553SHG0_NIACISporulationproteinYabPOS=NialliacirculansOX=1397GN=yabPPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	560.338623046875	2	560.342249	1118.66995	-7.144	-0.0040031	3.6168	0.0020266	-3.5273	-0.0019765	560.3441648343594	161.4	2.0053	160.03	159.58	161.59	-1.3692					105	41	5	0	0	0	0.7759	1	14083	14083		21.96	0	1	475740			62459	33268	51505	51555	68569	68569					0.11535748579603933
VSINPVRS	8	Unmodified	_VSINPVRS_					0	0	0			REV__nc|ENSG00000168538|Q7Z392-3|TRAPPC11	REV__nc|ENSG00000168538|Q7Z392-3|TRAPPC11	MULTI-MSMS	OvCa99_classI_Rep5	1	436.2532958984375	2	436.253434	870.492316	-0.1324	-5.7758E-05	-1.0063	-0.000439	-1.1387	-0.00049675	436.2533952237566	37.056	0.50194	37.056	36.796	37.298	0					34	10	5	0	0	0	0.57878	1	2005	2005		68.485	9.7027	1	285330	+		62460	28993	51506	51556	68570	68570					0.051889181002820806
VSINPVRS	8	Unmodified	_VSINPVRS_					0	0	0			REV__nc|ENSG00000168538|Q7Z392-3|TRAPPC11	REV__nc|ENSG00000168538|Q7Z392-3|TRAPPC11	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	436.253434	870.492316	-0.1324	-5.7758E-05	-1.0063	-0.000439	-1.1387	-0.00049675	436.2533952237566	37.056	0.50194	37.056	36.796	37.298	0	0	0	NaN	68.485	34	10	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	285330	+		62461	28993	51506	51556							0.051889181002820806
VSIQWRIL	8	Unmodified	_VSIQWRIL_					0	0	0		ENST00000552253.1_1_12:70986014-71031175:-|nuORF;ENST00000538174.6_1_12:70979073-71031175:-|nuORF;nc|ENSG00000127329|P23467-4|PTPRB;nc|ENSG00000127329|P23467-2|PTPRB;nc|ENSG00000127329|P23467|PTPRB;ENSG00000127329|ENST00000334414|PTPRB	ENST00000552253.1_1_12:70986014-71031175:-|nuORF	ENST00000552253.1_1_12:70986014-71031175:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.28009033203125	2	507.808377	1013.6022	0.11289	5.7324E-05	2.5088	0.001274	2.6217	0.0013313	507.8094185166436	80.669	1.2446	78.974	78.124	79.368	-1.6951					51	24	4	0	0	0	0.028476	1	6828	6828		23.042	0	1	152220			62462	3826	51507	51557	68571	68571					0.09594343439471231
VSIRKPASE	9	Unmodified	_VSIRKPASE_					0	0	0		nc|ENSG00000167202|Q9UPU7-2|TBC1D2B;ENSG00000167202|ENST00000300584|TBC1D2B	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.80133056640625	2	493.785099	985.555644	-0.23756	-0.0001173	0.038734	1.9126E-05	-0.19883	-9.8179E-05	493.7849901703885	47.008	0.6172	47.008	46.719	47.336	0					26	13	3	0	0	0	0.027462	1	3358	3358		45.972	3.5761	1	588870			62463	6770	51508	51558	68572	68572					0.06228858817519267
VSITNSPIT	9	Unmodified	_VSITNSPIT_					0	0	0			REV__ENSG00000082438|ENST00000652658|COBLL1	REV__ENSG00000082438|ENST00000652658|COBLL1	MULTI-SECPEP	OvCa9_classI_Rep2	2	466.2822265625	2	466.258382	930.502212	-0.24706	-0.00011519	0.641	0.00029887	0.39394	0.00018368	466.2584957020897	73.333	1.4658	70.933	70.22	71.685	-2.3999					47	27	3	0	0	0	0.027456	1	5899	5899		30.504	0	1	79837	+		62464	17086	51509	51559	68573	68573					0.034180613149942474
VSIVREVAI	9	Unmodified	_VSIVREVAI_					0	0	0			REV__nc|ENSG00000250423|Q9ULL0|KIAA1210	REV__nc|ENSG00000250423|Q9ULL0|KIAA1210	MULTI-MSMS	OvCa9_classI_Rep2	2	493.3056640625	2	493.305667	984.596781	0.47386	0.00023376	-0.28166	-0.00013895	0.19219	9.481E-05	493.30541764477005	114.35	1.2334	114.23	113.96	115.19	-0.11777					61	24	4	0	0	0	0.42676	1	10864	10864		49.442	4.9105	1	230960	+		62465	23494	51510	51560	68574	68574					0.10386619857001733
VSIVVVQW	8	Unmodified	_VSIVVVQW_					0	0	0		ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000105409|P13637-2|ATP1A3;nc|ENSG00000105409|P13637-3|ATP1A3;nc|ENSG00000163399|P05023-3|ATP1A1;nc|ENSG00000163399|P05023-4|ATP1A1;ENSG00000163399|ENST00000295598|ATP1A1;ENST00000479960.1_1_1:116943772-116944278:+|nuORF	ENSG00000105409|ENST00000648268|ATP1A3;nc|ENSG00000163399|P05023-3|ATP1A1	nc|ENSG00000163399|P05023-3|ATP1A1	MULTI-MSMS	OvCa9_classI_Rep2	2	465.27581787109375	2	465.276378	928.538203	-1.1013	-0.00051241	-2.7142	-0.0012628	-3.8155	-0.0017753	465.2750811836519	33.369	0.99477	30.659	30.42	31.415	-2.7097					31	19	3	0	0	0	0.62934	1	1195	1195		57.811	4.4598	1	61984			62466	6300;2455	51511	51561	68575	68575					0.07107563282522733
VSIYELVAD	9	Unmodified	_VSIYELVAD_					0	0	0			REV__tr|A0A553SSU6|A0A553SSU6_NIACIPTSsugartransportersubunitIIAOS=NialliacirculansOX=1397GN=CEQ21_03640PE=4SV=1	REV__tr|A0A553SSU6|A0A553SSU6_NIACIPTSsugartransportersubunitIIAOS=NialliacirculansOX=1397GN=CEQ21_03640PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.7750244140625	2	504.76604	1007.51753	-0.4473	-0.00022578	-2.9271	-0.0014775	-3.3744	-0.0017033	504.7643352693748	38.817	0.62001	38.817	38.576	39.196	0					26	13	3	0	0	0	0.027462	1	2237	2237		21.96	0	1	390390	+		62467	30881	51512	51562	68576	68576					0.014069281121805943
VSKAIVVALGL	11	Unmodified	_VSKAIVVALGL_					0	0	0			REV__tr|A0A553STV6|A0A553STV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_05725PE=3SV=1	REV__tr|A0A553STV6|A0A553STV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_05725PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.3528442382812	2	535.352617	1068.69068	-1.0025	-0.00053668	0.98489	0.00052726	-0.017583	-9.4133E-06	535.3529073853956	121.91	0.67738	120.57	120.25	120.93	-1.3479					29	12	3	0	0	0	0.7046	1	11518	11518		28.081	0.19925	1	53336	+		62468	31016	51513	51563	68577	68577					0.1590833895927517
VSKAIVVALGL	11	Unmodified	_VSKAIVVALGL_					0	0	0			REV__tr|A0A553STV6|A0A553STV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_05725PE=3SV=1	REV__tr|A0A553STV6|A0A553STV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_05725PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	535.352617	1068.69068	-2.0708	-0.0011086	1.9226	0.0010293	-0.14813	-7.93E-05	535.3534386979119	120.38	0.74012	120.21	119.94	120.68	-0.17138	-0.20837	0.0021107	NaN	28.081	28	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43737	+		62469	31016	51513	51563							0.1590833895927517
VSKAIVVALGL	11	Unmodified	_VSKAIVVALGL_					0	0	0			REV__tr|A0A553STV6|A0A553STV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_05725PE=3SV=1	REV__tr|A0A553STV6|A0A553STV6_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_05725PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	535.352617	1068.69068	2.1887	0.0011717	-2.4158	-0.0012933	-0.22718	-0.00012162	535.3511397893661	121.51	0.73317	120.48	120.12	120.85	-1.0286	0.062306	-0.0025346	NaN	28.081	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52795	+		62470	31016	51513	51563							0.1590833895927517
VSKCNVGFWF	10	Unmodified	_VSKCNVGFWF_					0	0	0			REV__Harlequin-int_dup373|chr10:84170978-84171612:-|1.3789702665036672|0.2294773950638092|2.59|421.0|4|1|sense	REV__Harlequin-int_dup373|chr10:84170978-84171612:-|1.3789702665036672|0.2294773950638092|2.59|421.0|4|1|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	593.7926635742188	2	593.789327	1185.5641	1.5634	0.00092831	4.0388	0.0023982	5.6022	0.0033265	593.7916196577046	147.53	3.1371	147.53	147.21	150.34	0					152	63	5	0	0	0	0.31157	1	17262	17262		79.451	5.196	1	2457000	+		62471	28187	51514	51564	68578	68578					-0.0212591053750657
VSKEESTRI	9	Unmodified	_VSKEESTRI_					0	0	0		ENST00000445957.2_1_1:190443635-190443668:-|nuORF	ENST00000445957.2_1_1:190443635-190443668:-|nuORF	ENST00000445957.2_1_1:190443635-190443668:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.7848510742188	2	524.785296	1047.55604	-1	-0.00052481	-1.4344	-0.00075276	-2.4345	-0.0012776	524.7843182315887	99.16	1.3828	96.835	96.433	97.816	-2.3253					57	26	3	0	0	0	0.33652	1	8829	8829		58.782	5.8453	1	401470			62472	11985	51515	51565	68579	68579					0.03416233746702346
VSKKNIFLL	9	Unmodified	_VSKKNIFLL_					0	0	0		nc|ENSG00000160710|P55265-5|ADAR;nc|ENSG00000160710|P55265-3|ADAR;nc|ENSG00000160710|P55265-2|ADAR;ENSG00000160710|ENST00000368474|ADAR;nc|ENSG00000160710|P55265-4|ADAR	nc|ENSG00000160710|P55265-5|ADAR	nc|ENSG00000160710|P55265-5|ADAR	MULTI-MSMS	OvCa99_classI_Rep5	1	531.34033203125	2	531.33951	1060.66447	0.76702	0.00040755	1.4986	0.00079626	2.2656	0.0012038	531.3402607079814	140.29	2.3131	140.29	139.97	142.29	0					124	46	5	0	0	0	0.22621	1	16408	16408		71.877	5.4482	1	3646000			62473	6084	51516	51566	68580	68580					0.13656069787793967
VSKLLEKV	8	Unmodified	_VSKLLEKV_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	OvCa99_classI_Rep5	1	458.29803466796875	2	458.29731	914.580068	-0.37989	-0.0001741	0.3712	0.00017012	-0.008697	-3.9858E-06	458.2973039330149	54.668	1.1456	54.668	54.334	55.48	0					42	26	3	0	0	0	0.39931	1	4429	4429		88.177	18.549	1	1329200			62474	7686	51517	51567	68581	68581					0.11936118971050291
VSKMGVFRLL	10	Unmodified	_VSKMGVFRLL_					0	0	0			REV__PPP2R2A-DHTKD1|2|fusion	REV__PPP2R2A-DHTKD1|2|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	575.3468017578125	2	575.344269	1148.67399	0.41999	0.00024164	3.1112	0.00179	3.5312	0.0020317	575.345898604362	159.91	1.5859	159.91	159.52	161.11	0					89	31	5	0	0	0	0.71173	1	18728	18728		29.17	2.1227	1	1545400	+		62475	29315	51518	51568	68582	68582					0.105595148016846
VSKMIEPSI	9	Unmodified	_VSKMIEPSI_					0	0	0			REV__LGR4|p.F803Sfs*13|1|0.15|ENSG00000205213|chr11:27368315-27368315|A/-|frameshift_variant	REV__LGR4|p.F803Sfs*13|1|0.15|ENSG00000205213|chr11:27368315-27368315|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	502.2784118652344	2	502.27826	1002.54197	-0.23534	-0.00011821	-1.2943	-0.00065008	-1.5296	-0.00076829	502.27748614458244	70.612	0.83441	70.612	70.005	70.839	0					43	20	3	0	0	0	0.13504	1	6793	6793		87.696	24.39	1	2765700	+		62476	23205	51519	51569	68583	68583					0.04079864994048421
VSKNIADAL	9	Unmodified	_VSKNIADAL_					0	0	0		tr|A0A553SLC9|A0A553SLC9_NIACIDNAtopoisomeraseOS=NialliacirculansOX=1397GN=CEQ21_20390PE=3SV=1	tr|A0A553SLC9|A0A553SLC9_NIACIDNAtopoisomeraseOS=NialliacirculansOX=1397GN=CEQ21_20390PE=3SV=1	tr|A0A553SLC9|A0A553SLC9_NIACIDNAtopoisomeraseOS=NialliacirculansOX=1397GN=CEQ21_20390PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	465.7674560546875	2	465.766374	929.518196	-0.17541	-8.1699E-05	0.098118	4.57E-05	-0.077289	-3.5998E-05	465.7662593361904	42.904	0.89759	42.904	42.624	43.521	0					52	20	4	0	0	0	0.26076	1	2794	2794		67.494	9.2637	1	2582400			62477	33709	51520	51570	68584	68584					0.05061767551887897
VSKNIADAL	9	Unmodified	_VSKNIADAL_					0	0	0		tr|A0A553SLC9|A0A553SLC9_NIACIDNAtopoisomeraseOS=NialliacirculansOX=1397GN=CEQ21_20390PE=3SV=1	tr|A0A553SLC9|A0A553SLC9_NIACIDNAtopoisomeraseOS=NialliacirculansOX=1397GN=CEQ21_20390PE=3SV=1	tr|A0A553SLC9|A0A553SLC9_NIACIDNAtopoisomeraseOS=NialliacirculansOX=1397GN=CEQ21_20390PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	465.766374	929.518196	-0.26458	-0.00012323	0.69905	0.0003256	0.43448	0.00020236	465.76638321603724	45.643	0.50385	42.933	42.697	43.2	-2.7097	0.014453	0.00043481	NaN	67.494	13	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14092			62478	33709	51520	51570							0.05061767551887897
VSKPARQE	8	Unmodified	_VSKPARQE_					0	0	0			REV__nc|ENSG00000196586|Q9UM54-5|MYO6	REV__nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-MSMS	OvCa9_classI_Rep4_	4	457.7569274902344	2	457.756341	913.498129	-1.8607	-0.00085173	1.5428	0.00070621	-0.31789	-0.00014552	457.7569376081696	49.899	1.7496	46.758	46.507	48.256	-3.1416					101	33	5	0	0	0	0.38806	1	2853	2853		90.37	18.492	1	729260	+		62479	22846	51521	51571	68585	68585					0.03792016611953386
VSKPARQE	8	Unmodified	_VSKPARQE_					0	0	0			REV__nc|ENSG00000196586|Q9UM54-5|MYO6	REV__nc|ENSG00000196586|Q9UM54-5|MYO6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	457.756341	913.498129	-0.23106	-0.00010577	0.24349	0.00011146	0.01243	5.6901E-06	457.75626367841795	49.673	1.0424	46.912	46.572	47.614	-2.7603	0.077368	-0.00058782	NaN	90.37	52	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109970	+		62480	22846	51521	51571							0.03792016611953386
VSKSKRVIL	9	Unmodified	_VSKSKRVIL_					0	0	0		tr|A0A7D6ZJI4|A0A7D6ZJI4_9CLOTDeoR/GlpRtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08670PE=4SV=1	tr|A0A7D6ZJI4|A0A7D6ZJI4_9CLOTDeoR/GlpRtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08670PE=4SV=1	tr|A0A7D6ZJI4|A0A7D6ZJI4_9CLOTDeoR/GlpRtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_08670PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.311767578125	2	515.342584	1028.67061	0.65827	0.00033924	-2.6382	-0.0013596	-1.98	-0.0010204	515.341190914552	35.292	0.20071	32.443	32.29	32.491	-2.849					5	3	2	0	0	0	0.027462	1	1107	1107		21.96	0	1	7269.4			62481	35642	51522	51572	68586	68586					0.15742588019315917
VSLARWAKV	9	Unmodified	_VSLARWAKV_					0	0	0			REV__RPL30|p.K32Tfs*28|1|0.07|ENSG00000156482|chr8:98045015-98045016|-/ACAGAAAGGGCCCTCCAGGCTTTGACGG|frameshift_variant	REV__RPL30|p.K32Tfs*28|1|0.07|ENSG00000156482|chr8:98045015-98045016|-/ACAGAAAGGGCCCTCCAGGCTTTGACGG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	515.3110961914062	2	515.313826	1028.6131	-2.0827	-0.0010732	-2.1884	-0.0011277	-4.2711	-0.0022009	515.312623228854	35.485	1.3896	32.775	32.503	33.893	-2.7097					66	27	3	0	0	0	0.48324	1	1449	1449		44.117	0	1	694720	+		62482	29338	51523	51573	68587	68587					0.09993745813744681
VSLDKRSD	8	Unmodified	_VSLDKRSD_					0	0	0		ENSG00000176177|ENST00000325157|ENTHD1	ENSG00000176177|ENST00000325157|ENTHD1	ENSG00000176177|ENST00000325157|ENTHD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	459.25604248046875	2	460.245806	918.47706	-0.30011	-0.00013812	-0.37029	-0.00017043	-0.6704	-0.00030855	460.2455499272566	57.61	0.81454	54.265	53.934	54.748	-3.3449					21	15	2	0	0	0	0.028476	1	3718	3718		68.787	31.628	1	15027			62483	7588	51524	51574	68588	68588					0.014560065124214816
VSLEEAWPL	9	Unmodified	_VSLEEAWPL_					0	0	0		nc|ENSG00000137337|Q14676-4|MDC1;nc|ENSG00000137337|Q14676-3|MDC1;nc|ENSG00000137337|Q14676-2|MDC1;ENSG00000137337|ENST00000376406|MDC1	nc|ENSG00000137337|Q14676-4|MDC1	nc|ENSG00000137337|Q14676-4|MDC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.8023071289062	2	522.274032	1042.53351	2.0463	0.0010687	-2.7351	-0.0014285	-0.68884	-0.00035977	522.2724701865247	97.919	1.0655	97.919	97.267	98.332	0					40	24	3	0	0	0	0.027462	1	10681	10681		30.504	9.6665	1	454640			62484	4578	51525	51575	68589	68589					0.013946343490943036
VSLFFTLI	8	Unmodified	_VSLFFTLI_					0	0	0			REV__ENST00000604202.1_1_6:26374788-26375031:+|nuORF	REV__ENST00000604202.1_1_6:26374788-26375031:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	470.28021240234375	2	470.281129	938.547705	0.47771	0.00022466	-4.344	-0.0020429	-3.8663	-0.0018182	470.27884291509423	102.23	1.2091	100.03	99.727	100.94	-2.1994					58	22	4	0	0	0	0.60486	1	9197	9197		62.978	2.0065	1	115140	+		62485	28057	51526	51576	68590	68590					0.07597331568058507
VSLFFTLI	8	Unmodified	_VSLFFTLI_					0	0	0			REV__ENST00000604202.1_1_6:26374788-26375031:+|nuORF	REV__ENST00000604202.1_1_6:26374788-26375031:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	470.281129	938.547705	-1.1088	-0.00052143	-2.9826	-0.0014027	-4.0914	-0.0019241	470.27960225645484	100.62	1.3878	99.792	99.558	100.95	-0.83051	-0.11354	0.00043352	NaN	62.978	57	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109220	+		62486	28057	51526	51576							0.07597331568058507
VSLFFTLI	8	Unmodified	_VSLFFTLI_					0	0	0			REV__ENST00000604202.1_1_6:26374788-26375031:+|nuORF	REV__ENST00000604202.1_1_6:26374788-26375031:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	470.281129	938.547705	-0.56103	-0.00026384	-3.5466	-0.0016679	-4.1077	-0.0019318	470.2793017190243	101.5	1.4152	99.897	99.498	100.91	-1.6053	-0.0078659	-9.697E-05	NaN	62.978	55	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	141320	+		62487	28057	51526	51576							0.07597331568058507
VSLFFTLI	8	Unmodified	_VSLFFTLI_					0	0	0			REV__ENST00000604202.1_1_6:26374788-26375031:+|nuORF	REV__ENST00000604202.1_1_6:26374788-26375031:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	470.281129	938.547705	0.47771	0.00022466	-4.344	-0.0020429	-3.8663	-0.0018182	470.27884291509423	102.23	1.2091	100.03	99.727	100.94	-2.1994	0.12141	-0.00084693	NaN	62.978	58	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115140	+		62488	28057	51526	51576							0.07597331568058507
VSLGAPKVR	9	Unmodified	_VSLGAPKVR_					0	0	0		ENST00000416447.1_1_21:42742240-42742282:+|nuORF	ENST00000416447.1_1_21:42742240-42742282:+|nuORF	ENST00000416447.1_1_21:42742240-42742282:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.7933044433594	2	463.792727	925.5709	-1.1937	-0.00055365	0.4259	0.00019753	-0.76784	-0.00035612	463.79306876032103	55.435	1.8299	52.14	51.341	53.171	-3.2944					91	35	4	0	0	0	0.55588	1	3544	3544		37.159	1.5408	1	2918300			62489	11603	51527	51577	68591	68591					0.1051377040537318
VSLGGHTLILI	11	Unmodified	_VSLGGHTLILI_					0	0	0		ENSG00000184814|ENST00000329447|PRR23B	ENSG00000184814|ENST00000329447|PRR23B	ENSG00000184814|ENST00000329447|PRR23B	MULTI-MSMS	OvCa99_classI_Rep5	1	561.845947265625	2	561.847699	1121.68084	1.4749	0.00082867	-3.2225	-0.0018106	-1.7476	-0.00098188	561.845750192742	157.32	1.5158	157.32	156.95	158.46	0					97	30	5	0	0	0	0.70865	1	18412	18412		26.693	0	1	1429200			62490	8192	51528	51578	68592	68592					0.12487150953893433
VSLGHQAGV	9	Unmodified	_VSLGHQAGV_					0	0	0		ENST00000520820.1_1_8:103251674-103256308:+|nuORF	ENST00000520820.1_1_8:103251674-103256308:+|nuORF	ENST00000520820.1_1_8:103251674-103256308:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.76007080078125	2	434.237784	866.461016	1.1692	0.0005077	2.7762	0.0012055	3.9453	0.0017132	434.2387013233873	141.71	3.24	140.25	138.29	141.53	-1.4627					99	62	2	0	0	0	0.027462	1	13661	13661		29.15	12.676	1	17047			62491	13114	51529	51579	68593	68593					0.022443450661853603
VSLGKGLK	8	Unmodified	_VSLGKGLK_					0	0	0		ENSG00000115423|ENST00000389394|DNAH6;nc|ENSG00000115423|Q9C0G6-4|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	MULTI-MSMS	OvCa9_classI_Rep2	2	401.26202392578125	2	401.263271	800.511988	1.296	0.00052003	-4.2066	-0.001688	-2.9106	-0.0011679	401.26147123184654	136.26	1.7613	136.04	135.22	136.99	-0.22696					76	35	3	0	0	0	0.73136	1	13504	13504		8.2313	0	1	533840			62492	3097	51530	51580	68594	68594					0.10375294111031508
VSLGKRITR	9	Unmodified	_VSLGKRITR_					0	0	0			REV__ENST00000497165.5_1_1:228275846-228275912:+|nuORF	REV__ENST00000497165.5_1_1:228275846-228275912:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.294189453125	2	515.330008	1028.64546	-0.12505	-6.4441E-05	-1.3088	-0.00067446	-1.4338	-0.0007389	515.3295932703872	32.763	0.54236	32.763	32.254	32.796	0					15	10	3	0	0	0	0.027462	1	1445	1445		19.997	0	1	46348	+		62493	26770	51531	51581	68595	68595					0.13228533216715732
VSLHIMDI	8	Unmodified	_VSLHIMDI_					0	0	0			REV__tr|A0A553SMK1|A0A553SMK1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_22625PE=4SV=1	REV__tr|A0A553SMK1|A0A553SMK1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_22625PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.73321533203125	2	464.252046	926.489538	-0.68265	-0.00031692	0.57553	0.00026719	-0.10712	-4.973E-05	464.25035201956933	79.525	0.81577	76.774	76.61	77.425	-2.7514					24	16	2	0	0	0	0.028476	1	6526	6526		26.796	0	1	19532	+		62494	30339	51532	51582	68596	68596					0.023353266510980575
VSLIFKHCL	9	Unmodified	_VSLIFKHCL_					0	0	0		ENST00000578010.1_1_18:9550007-9550464:-|nuORF;ENST00000582594.5_1_18:9547789-9550464:-|nuORF	ENST00000578010.1_1_18:9550007-9550464:-|nuORF	ENST00000578010.1_1_18:9550007-9550464:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.2827758789062	2	530.304613	1058.59467	-0.72131	-0.00038251	2.128	0.0011285	1.4067	0.00074598	530.3056450242282	90.519	0.5093	87.944	87.6	88.11	-2.575					12	9	2	0	0	0	0.027462	1	7789	7789		24.203	0	1	29390			62495	13963	51533	51583	68597	68597					0.06771867847510293
VSLIRRTE	8	Unmodified	_VSLIRRTE_					0	0	0			REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8	REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.29437255859375	2	487.293091	972.571629	-0.15015	-7.3167E-05	-0.30825	-0.00015021	-0.4584	-0.00022337	487.2928615392461	39.498	1.8328	36.572	36.296	38.129	-2.9264					81	35	4	0	0	0	0.62934	1	1623	1623		57.811	0	1	525940	+		62496	17726	51534	51584	68598	68598					0.0842456505440623
VSLIRRTE	8	Unmodified	_VSLIRRTE_					0	0	0			REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8	REV__nc|ENSG00000105429|Q7Z7M0-2|MEGF8	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	487.293091	972.571629	-0.52558	-0.00025611	0.38237	0.00018633	-0.14321	-6.9784E-05	487.2931902266913	39.338	1.0419	36.628	36.41	37.452	-2.7097	0.028081	0.00029028	NaN	57.811	39	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118040	+		62497	17726	51534	51584							0.0842456505440623
VSLIVGIGAV	10	Unmodified	_VSLIVGIGAV_					0	0	0		tr|A0A553STX3|A0A553STX3_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05830PE=3SV=1	tr|A0A553STX3|A0A553STX3_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05830PE=3SV=1	tr|A0A553STX3|A0A553STX3_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_05830PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	464.2979431152344	2	464.29731	926.580068	-1.0473	-0.00048624	0.92276	0.00042844	-0.12449	-5.7801E-05	464.29762801591284	102.69	1.6773	102.01	101.59	103.27	-0.68459					77	33	4	0	0	0	0.28791	1	9451	9451		82.305	10.428	1	474550			62498	34545	51535	51585	68599	68599					0.11384118971045609
VSLLGTRRPRG	11	Unmodified	_VSLLGTRRPRG_					0	0	0			REV__ENSG00000197410|ENST00000357232|DCHS2	REV__ENSG00000197410|ENST00000357232|DCHS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3694458007812	2	606.370195	1210.72584	-0.26856	-0.00016285	-0.5906	-0.00035812	-0.85916	-0.00052097	606.369699493104	145.24	3.8933	143.8	141.64	145.53	-1.4357					226	74	4	0	0	0	0.71498	1	14225	14225		24.519	0	1	336140	+		62499	22920	51536	51586	68600	68600					0.12890394539772387
VSLLLIKLN	9	Unmodified	_VSLLLIKLN_					0	0	0			REV__chr11:77616695-77629763|113|50.0|0.14|8.47|-|0|CLNS1A,CLNS1A|2	REV__chr11:77616695-77629763|113|50.0|0.14|8.47|-|0|CLNS1A,CLNS1A|2	MULTI-MSMS	OvCa9_classI_Rep3	3	506.8415222167969	2	506.841885	1011.66922	0.20474	0.00010377	-0.6526	-0.00033076	-0.44786	-0.00022699	506.8414138702273	110.62	1.4666	109.48	109.19	110.66	-1.1444					67	28	3	0	0	0	0.13504	1	8004	8004		87.696	10.379	1	153370	+		62500	15871	51537	51587	68601	68601					0.16384953930548818
VSLLNLFLK	9	Unmodified	_VSLLNLFLK_					0	0	0			REV__tr|A0A7D6ZY15|A0A7D6ZY15_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00445PE=4SV=1	REV__tr|A0A7D6ZY15|A0A7D6ZY15_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00445PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.2863159179688	2	523.83406	1045.65357	-0.092371	-4.8387E-05	-0.88344	-0.00046278	-0.97581	-0.00051116	523.8336241232752	95.025	0.59124	93.925	93.655	94.246	-1.0995					18	11	2	0	0	0	0.027433	1	8520	8520		45.972	5.1941	1	15767	+		62501	32356	51538	51588	68602	68602					0.1325666741349778
VSLLTVSDF	9	Unmodified	_VSLLTVSDF_					0	0	0		ENST00000519428.5_1_8:64081436-64088020:+|nuORF	ENST00000519428.5_1_8:64081436-64088020:+|nuORF	ENST00000519428.5_1_8:64081436-64088020:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	490.3194885253906	2	490.768583	979.522613	-0.11526	-5.6567E-05	-2.7258	-0.0013378	-2.8411	-0.0013943	490.76683079485997	46.754	0.87373	43.681	43.398	44.272	-3.0724					21	16	2	0	0	0	0.027462	1	2469	2469		35.618	19.976	1	73275			62502	13087	51539	51589	68603	68603					0.03203231974805476
VSLLVGGIGL	10	Unmodified	_VSLLVGGIGL_					0	0	0			REV__tr|A0A7D6VX77|A0A7D6VX77_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07365PE=4SV=1	REV__tr|A0A7D6VX77|A0A7D6VX77_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07365PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	464.2972717285156	2	464.29731	926.580068	-1.0473	-0.00048624	0.92276	0.00042844	-0.12449	-5.7801E-05	464.29762801591284	102.69	1.6773	102.01	101.59	103.27	-0.68459					77	33	4	0	0	0	0.28791	1	9467	9467		82.305	0.064519	1	474550	+		62503	31767	51540	51590	68604	68604					0.1138411897103424
VSLPARRLK	9	Unmodified	_VSLPARRLK_					0	0	0		ENSG00000121898|ENST00000241305|CPXM2	ENSG00000121898|ENST00000241305|CPXM2	ENSG00000121898|ENST00000241305|CPXM2	MULTI-MSMS	OvCa9_classI_Rep2	2	520.3397216796875	2	520.340375	1038.6662	-0.11114	-5.783E-05	-0.1677	-8.7261E-05	-0.27884	-0.00014509	520.3401542748645	39.812	1.4362	37.102	36.805	38.241	-2.7097					67	28	4	0	0	0	0.6653	1	2005	2005		24.203	1.1603	1	306910			62504	3505	51541	51591	68605	68605					0.14841123596397665
VSLPRPGAH	9	Unmodified	_VSLPRPGAH_					0	0	0			REV__nc|ENSG00000182606|Q9UPV9-3|TRAK1	REV__nc|ENSG00000182606|Q9UPV9-3|TRAK1	MULTI-MSMS	OvCa99_classI_Rep5	1	467.266357421875	2	467.266876	932.519199	-0.36383	-0.00017	-0.18713	-8.744E-05	-0.55096	-0.00025744	467.2667923320578	29.362	0.79842	29.362	29.137	29.935	0					34	15	4	0	0	0	0.6653	1	1054	1054		24.203	1.1603	1	2003200	+		62505	29041	51542	51592	68606	68606					0.050240267114645576
VSLRPGLA	8	Unmodified	_VSLRPGLA_					0	0	0		ENST00000574501.1_1_17:1963882-1964287:-|nuORF	ENST00000574501.1_1_17:1963882-1964287:-|nuORF	ENST00000574501.1_1_17:1963882-1964287:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	405.91278076171875	2	406.75307	811.491587	1.6126	0.00065594	-1.3116	-0.0005335	0.30101	0.00012244	406.75238284144365	64.542	1.406	61.057	60.724	62.13	-3.4854					57	28	3	0	0	0	0.028476	1	4724	4724		19.36	0	1	574420			62506	13932	51543	51593	68607	68607					0.07830123451219606
VSLTAVNENK	10	Unmodified	_VSLTAVNENK_					0	0	0			REV__ENSG00000181790|ENST00000517894|ADGRB1	REV__ENSG00000181790|ENST00000517894|ADGRB1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.314208984375	2	537.793121	1073.57169	-1.3403	-0.00072078	0.63484	0.00034141	-0.70542	-0.00037937	537.7936015640759	82.444	1.1718	79.761	79.538	80.71	-2.683					32	23	2	0	0	0	0.02676	1	6839	6839		41.427	0	1	102300	+		62507	22249	51544	51594	68608	68608					0.03784520263752711
VSLTAVNENK	10	Unmodified	_VSLTAVNENK_					0	0	0			REV__ENSG00000181790|ENST00000517894|ADGRB1	REV__ENSG00000181790|ENST00000517894|ADGRB1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	537.793121	1073.57169	2.3767	0.0012782	-0.39217	-0.00021091	1.9845	0.0010673	537.7930925956822	80.193	0.54372	80.193	79.944	80.487	0	0.29765	-0.00056835	NaN	38.754	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	239350	+		62508	22249	51544	51594							0.03784520263752711
VSLTAVNENK	10	Unmodified	_VSLTAVNENK_					0	0	0			REV__ENSG00000181790|ENST00000517894|ADGRB1	REV__ENSG00000181790|ENST00000517894|ADGRB1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	537.793121	1073.57169	-0.36766	-0.00019773	0.3365	0.00018097	-0.031163	-1.6759E-05	537.7930197476101	81.532	0.6681	79.883	79.614	80.282	-1.6485	-0.011842	0.0002154	NaN	38.754	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52570	+		62509	22249	51544	51594							0.03784520263752711
VSLTAVNENK	10	Unmodified	_VSLTAVNENK_					0	0	0			REV__ENSG00000181790|ENST00000517894|ADGRB1	REV__ENSG00000181790|ENST00000517894|ADGRB1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	537.793121	1073.57169	0.27694	0.00014894	-0.37077	-0.0001994	-0.093828	-5.046E-05	537.7926639185754	82.04	0.65458	79.743	79.484	80.138	-2.2963	-0.15183	-0.00054533	NaN	38.754	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	128450	+		62510	22249	51544	51594							0.03784520263752711
VSLTCQKQ	8	Unmodified	_VSLTCQKQ_					0	0	0		nc|ENSG00000151490|Q16827-2|PTPRO;ENSG00000151490|ENST00000281171|PTPRO;nc|ENSG00000151490|Q16827-5|PTPRO	nc|ENSG00000151490|Q16827-2|PTPRO	nc|ENSG00000151490|Q16827-2|PTPRO	MULTI-MSMS	OvCa99_classI_Rep5	1	453.7402038574219	2	453.739302	905.464052	2.4592	0.0011158	0.74206	0.0003367	3.2012	0.0014525	453.7395025518128	84.861	1.7684	84.861	84.345	86.113	0					82	42	3	0	0	0	0.42649	1	8885	8885		84.916	15.288	1	2169200			62511	5558	51545	51595	68609	68609					0.007538521286846844
VSLTEGLIIS	10	Unmodified	_VSLTEGLIIS_					0	0	0			REV__nc|ENSG00000067113|O14494-2|PLPP1	REV__nc|ENSG00000067113|O14494-2|PLPP1	MULTI-MSMS	OvCa9_classI_Rep2	2	516.3026123046875	2	516.30279	1030.59103	-1.3641	-0.00070426	1.9153	0.00098889	0.55128	0.00028463	516.3037096883031	61.9	2.366	59.14	58.568	60.934	-2.7593					127	45	4	0	0	0	0.48198	1	4662	4662		56.721	15.943	1	1077700	+		62512	28727	51546	51596	68610	68610					0.07695476554658853
VSLTKREV	8	Unmodified	_VSLTKREV_					0	0	0			REV__ENST00000342409.3_1_10:14050278-14050311:-|nuORF	REV__ENST00000342409.3_1_10:14050278-14050311:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	466.2822265625	2	466.282192	930.549831	-2.6152	-0.0012194	2.1372	0.00099653	-0.47797	-0.00022287	466.2831375283496	36.825	2.2186	34.116	33.893	36.112	-2.7097					109	44	4	0	0	0	0.7224	1	1680	1680		38.806	0	1	2007800	+		62513	24649	51547	51597	68611	68611					0.08177760305841275
VSLTTVKT	8	Unmodified	_VSLTTVKT_					0	0	0		tr|A0A7D7A4I4|A0A7D7A4I4_9CLOTUPF0316proteinHZF06_01905OS=ClostridiumintestinaleOX=36845GN=HZF06_01905PE=3SV=1	tr|A0A7D7A4I4|A0A7D7A4I4_9CLOTUPF0316proteinHZF06_01905OS=ClostridiumintestinaleOX=36845GN=HZF06_01905PE=3SV=1	tr|A0A7D7A4I4|A0A7D7A4I4_9CLOTUPF0316proteinHZF06_01905OS=ClostridiumintestinaleOX=36845GN=HZF06_01905PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	424.8903503417969	2	424.758018	847.501483	-0.050702	-2.1536E-05	1.6114	0.00068448	1.5607	0.00066294	424.75855261838024	51.525	0.45628	51.525	51.291	51.747	0					16	10	2	0	0	0	0.028476	1	3961	3961		10.265	0	1	238600			62514	36145	51548	51598	68612	68612					0.07163266665941137
VSLVEVSIRN	10	Unmodified	_VSLVEVSIRN_					0	0	0			REV__ENSG00000105877|ENST00000409508|DNAH11;REV__nc|ENSG00000007174|Q9NYC9-2|DNAH9;REV__ENSG00000187775|ENST00000389840|DNAH17	REV__ENSG00000105877|ENST00000409508|DNAH11	MULTI-SECPEP	OvCa9_classI_Rep3	3	557.8456420898438	2	558.324588	1114.63462	-0.77771	-0.00043422	0.72637	0.00040555	-0.051341	-2.8665E-05	558.3249926782019	88.579	0.78554	86.448	86.061	86.846	-2.1309					28	15	3	0	0	0	0.026802	1	5378	5378		42.396	0	1	63088	+		62515	17764;16315;22662	51549	51599	68613	68613					0.081890860518115
VSLVFKNVQEE	11	Unmodified	_VSLVFKNVQEE_					0	0	0			REV__nc|ENSG00000171877|Q7Z6J6-2|FRMD5	REV__nc|ENSG00000171877|Q7Z6J6-2|FRMD5	MULTI-MSMS	OvCa9_classI_Rep4_	4	431.2337341308594	3	431.234599	1290.68197	0.32719	0.00014109	-2.6967	-0.0011629	-2.3696	-0.0010218	431.23348895655243	40.197	2.2301	37.243	36.963	39.193	-2.9541					131	42	5	0	0	0	0.61375	1	1762	1762		43.419	3.5454	1	2708400	+		62516	21655	51550	51600	68614	68614					0.048253205321543646
VSLVIVIH	8	Unmodified	_VSLVIVIH_					0	0	0		ENST00000466845.1_1_3:197581307-197585851:+|nuORF	ENST00000466845.1_1_3:197581307-197585851:+|nuORF	ENST00000466845.1_1_3:197581307-197585851:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	440.6741943359375	2	440.286746	878.558939	0.72389	0.00031872	-0.45977	-0.00020243	0.26412	0.00011629	440.28642545049144	110.05	0.78951	108.45	108.17	108.96	-1.6011					21	14	2	0	0	0	0.028476	1	10103	10103		29.842	9.3597	1	14905			62517	12299	51551	51601	68615	68615					0.11480153662182602
VSLVIVIH	8	Unmodified	_VSLVIVIH_					0	0	0		ENST00000466845.1_1_3:197581307-197585851:+|nuORF	ENST00000466845.1_1_3:197581307-197585851:+|nuORF	ENST00000466845.1_1_3:197581307-197585851:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	440.286746	878.558939	0.13688	6.0265E-05	-0.13417	-5.9074E-05	0.0027047	1.1909E-06	440.2866275896255	109.52	0.6831	108.38	108.03	108.72	-1.1444	-0.036781	0.00014782	NaN	29.842	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19969			62518	12299	51551	51601							0.11480153662182602
VSLVQFVSRI	10	Unmodified	_VSLVQFVSRI_					0	0	0			REV__ENSG00000168917|ENST00000446465|SLC35G2	REV__ENSG00000168917|ENST00000446465|SLC35G2	MULTI-MSMS	OvCa9_classI_Rep2	2	574.3439331054688	2	574.345323	1146.67609	-1.7317	-0.00099457	0.98094	0.0005634	-0.75071	-0.00043117	574.3458180931545	99.995	2.5316	99.165	98.019	100.55	-0.83051					122	50	4	0	0	0	0.54579	1	9130	9130		48.602	0.64203	1	449440	+		62519	21417	51552	51602	68616	68616					0.10862266811136578
VSLVYEGPK	9	Unmodified	_VSLVYEGPK_					0	0	0			REV__ENST00000505323.1_1_5:108260361-108380497:+|nuORF	REV__ENST00000505323.1_1_5:108260361-108380497:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	495.7760925292969	2	496.276575	990.538597	-1.078	-0.00053499	3.9778	0.0019741	2.8998	0.0014391	496.2784695496476	36.625	0.85793	36.625	36.119	36.977	0					30	18	3	0	0	0	0.027462	1	1952	1952		44.117	19.914	1	248300	+		62520	20231	51553	51603	68617	68617					0.04294938211717181
VSMEGLAWV	9	Unmodified	_VSMEGLAWV_					0	0	0		ENST00000166139.8_1_19:682089-682434:+|nuORF	ENST00000166139.8_1_19:682089-682434:+|nuORF	ENST00000166139.8_1_19:682089-682434:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	496.2716979980469	2	496.249503	990.484453	0.63258	0.00031392	-3.9233	-0.0019469	-3.2907	-0.001633	496.2472651291194	71.454	1.466	68.947	68.437	69.903	-2.5072					57	27	4	0	0	0	0.027426	1	5837	5837		63.306	2.3343	1	90936			62521	9639	51554	51604	68618	68618					-0.011169772115067644
VSMYQTVVTSL	11	Unmodified	_VSMYQTVVTSL_					0	0	0		nc|ENSG00000106459|Q16656-3|NRF1;nc|ENSG00000106459|Q16656-2|NRF1;ENSG00000106459|ENST00000393232|NRF1;nc|ENSG00000106459|Q16656-4|NRF1	nc|ENSG00000106459|Q16656-3|NRF1	nc|ENSG00000106459|Q16656-3|NRF1	MULTI-MSMS	OvCa9_classI_Rep2	2	409.88037109375	3	409.881168	1226.62167	-0.17802	-7.2968E-05	-1.5397	-0.00063109	-1.7177	-0.00070406	409.88034409875627	52.182	1.4338	49.369	48.996	50.43	-2.8129					84	28	4	0	0	0	0.55686	1	3471	3471		48.602	0	1	479560			62522	2552	51555	51605	68619	68619					0.017428868774004513
VSNKVVELI	9	Unmodified	_VSNKVVELI_					0	0	0			REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	REV__nc|ENSG00000140525|Q9NVI1-2|FANCI	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.3222961425781	2	500.8055	999.596446	-0.1394	-6.9812E-05	-1.4958	-0.0007491	-1.6352	-0.00081891	500.80434351590236	122.48	0.64444	121.11	120.96	121.6	-1.3666					14	12	2	0	0	0	0.027462	1	11619	11619		20.947	0	1	20497	+		62523	28896	51556	51606	68620	68620					0.09663200137140393
VSNLNHVNSV	10	Unmodified	_VSNLNHVNSV_					0	0	0			REV__nc|ENSG00000276045|Q96D31-2|ORAI1	REV__nc|ENSG00000276045|Q96D31-2|ORAI1	MULTI-MSMS	OvCa9_classI_Rep2	2	541.7839965820312	2	541.783087	1081.55162	1.1001	0.00059603	1.9388	0.0010504	3.039	0.0016465	541.7841459265117	90.242	2.8271	88.94	88.433	91.26	-1.302					140	54	4	0	0	0	0.20836	1	7979	7979		93.143	2.7734	1	1182300	+		62524	23628	51557	51607	68621	68621					0.014107693237974672
VSNQRSWV	8	Unmodified	_VSNQRSWV_					0	0	0			REV__ENSG00000137460|ENST00000511601|FHDC1	REV__ENSG00000137460|ENST00000511601|FHDC1	MULTI-SECPEP	OvCa9_classI_Rep2	2	487.2989196777344	2	488.253966	974.493378	0.65383	0.00031923	-2.001	-0.000977	-1.3472	-0.00065777	488.2529988060244	64.888	1.403	62.163	61.389	62.792	-2.7246					55	26	3	0	0	0	0.028476	1	4879	4879		19.36	9.6543	1	128810	+		62525	19452	51558	51608	68622	68622					0.005111324691938535
VSNVHNLNSV	10	Unmodified	_VSNVHNLNSV_					0	0	0		nc|ENSG00000276045|Q96D31-2|ORAI1;ENSG00000276045|ENST00000617316|ORAI1	nc|ENSG00000276045|Q96D31-2|ORAI1	nc|ENSG00000276045|Q96D31-2|ORAI1	MSMS	OvCa9_classI_Rep3	3	541.7852172851562	2	541.783087	1081.55162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.122	1	89.098	88.598	89.598	-2.0241								0	0	0	0.092377	1	5696	5696		87.696	0	1				62526	9577	51559	51609	68623	68623					0.014107693237974672
VSPDFGETL	9	Unmodified	_VSPDFGETL_					0	0	0			REV__ENST00000525430.1_1_14:39583533-39591807:+|nuORF	REV__ENST00000525430.1_1_14:39583533-39591807:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	482.73187255859375	2	482.73474	963.454927	-0.2265	-0.00010934	-4.3715	-0.0021103	-4.598	-0.0022196	482.7325606301315	35.776	1.0117	35.776	35.339	36.351	0					54	21	4	0	0	0	0.14739	1	1850	1850		85.359	14.064	1	2150300	+		62527	17266	51560	51610	68624	68624					-0.028262179559760625
VSPEMNPT	8	Unmodified	_VSPEMNPT_					0	0	0		nc|ENSG00000172432|Q9BX10-3|GTPBP2;nc|ENSG00000172432|Q9BX10-2|GTPBP2;nc|ENSG00000172432|Q9BX10-4|GTPBP2;ENSG00000172432|ENST00000307126|GTPBP2	nc|ENSG00000172432|Q9BX10-3|GTPBP2	nc|ENSG00000172432|Q9BX10-3|GTPBP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	437.7051696777344	2	437.702386	873.390218	1.258	0.00055064	2.9244	0.00128	4.1824	0.0018306	437.70353463831	67.992	1.3221	64.502	64.136	65.459	-3.4902					49	26	3	0	0	0	0.73288	1	5027	5027		35.201	1.6851	1	393820			62528	7297	51561	51611	68625	68625					-0.05154116033634182
VSPGPWGL	8	Unmodified	_VSPGPWGL_					0	0	0		ENSG00000182253|ENST00000336292|SYNM;nc|ENSG00000182253|O15061-2|SYNM;SYNM|p.V1009Afs*14|1|0.19|ENSG00000182253|chr15:99131385-99131386|-/CTCGGTGTACGGGCAGATCCACA|frameshift_variant	ENSG00000182253|ENST00000336292|SYNM	ENSG00000182253|ENST00000336292|SYNM	MULTI-MSMS	OvCa99_classI_Rep5	1	406.7200012207031	2	406.718696	811.422839	0.679	0.00027616	0.078497	3.1926E-05	0.7575	0.00030809	406.7185668331598	69.582	1.3336	69.582	69.347	70.681	0					68	32	4	0	0	0	0.73288	1	6646	6646		35.201	0	1	7274100			62529	7984	51562	51612	68626	68626					0.009584591515135799
VSPGWGEAVL	10	Unmodified	_VSPGWGEAVL_					0	0	0			REV__ENST00000342665.4_2_20:309233-309338:+|nuORF	REV__ENST00000342665.4_2_20:309233-309338:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	507.76629638671875	2	507.766374	1013.5182	-0.36325	-0.00018445	0.3453	0.00017533	-0.01795	-9.1144E-06	507.76638761877894	131.88	1.6751	130.75	129.96	131.63	-1.1249					88	33	4	0	0	0	0.59703	1	10551	10551		42.396	3.1433	1	127470	+		62530	24654	51563	51613	68627	68627					0.01197767551900597
VSPHSHFFV	9	Unmodified	_VSPHSHFFV_					0	0	0			REV__ENST00000471887.1_1_7:18557286-18557502:+|nuORF	REV__ENST00000471887.1_1_7:18557286-18557502:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.7484741210938	2	528.766709	1055.51886	0.49541	0.00026196	0.81789	0.00043247	1.3133	0.00069443	528.7665029581929	140.86	0.45276	140.86	140.68	141.13	0					14	8	2	0	0	0	0.027462	1	16442	16442		45.952	0	1	73434	+		62531	26297	51564	51614	68628	68628					-0.006673930083934465
VSPLPHLGPL	10	Unmodified	_VSPLPHLGPL_					0	0	0		ENST00000442114.6_2_6:43968492-43968717:+|nuORF	ENST00000442114.6_2_6:43968492-43968717:+|nuORF	ENST00000442114.6_2_6:43968492-43968717:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.3081665039062	2	515.30821	1028.60187	-0.74215	-0.00038243	0.59964	0.000309	-0.14251	-7.3438E-05	515.3083883346414	144.31	1.0396	142.88	142.58	143.62	-1.4357					42	19	3	0	0	0	0.67306	1	14141	14141		33.516	6.7195	1	70173			62532	11938	51565	51615	68629	68629					0.08870923719609891
VSPPLPPPPS	10	Unmodified	_VSPPLPPPPS_					0	0	0		ENST00000242108.8_1_7:36192946-36193138:+|nuORF	ENST00000242108.8_1_7:36192946-36193138:+|nuORF	ENST00000242108.8_1_7:36192946-36193138:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2583312988281	2	494.279118	986.543683	-0.15891	-7.8544E-05	-4.0303	-0.0019921	-4.1892	-0.0020706	494.27684725425115	68.994	0.41444	68.994	68.692	69.106	0					16	9	3	0	0	0	0.026802	1	6500	6500		34.173	11.13	1	352880			62533	9761	51566	51616	68630	68630					0.049872420743326984
VSPQRTAM	8	Unmodified	_VSPQRTAM_					0	0	0			REV__ENST00000526682.5_1_11:36398008-36415533:+|nuORF	REV__ENST00000526682.5_1_11:36398008-36415533:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	444.251220703125	2	445.231645	888.448736	1.5745	0.00070103	-1.2113	-0.00053931	0.36323	0.00016172	445.2309931370043	46.409	0.89234	43.7	43.3	44.192	-2.7097					27	17	2	0	0	0	0.028476	1	2800	2800		40.573	0	1	22974	+		62534	27145	51567	51617	68631	68631					4.985331509033131E-05
VSPRINLT	8	Unmodified	_VSPRINLT_					0	0	0		ENST00000482658.1_1_2:102626076-102632522:+|nuORF;ENST00000464994.5_1_2:102608436-102626289:+|nuORF;nc|ENSG00000115590|P27930-2|IL1R2;ENSG00000115590|ENST00000332549|IL1R2	ENST00000482658.1_1_2:102626076-102632522:+|nuORF	ENST00000482658.1_1_2:102626076-102632522:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	449.27459716796875	2	450.269084	898.523616	-0.31524	-0.00014195	0.28732	0.00012937	-0.027926	-1.2574E-05	450.2690614755416	92.731	0.80557	90.224	89.908	90.714	-2.5072					29	15	3	0	0	0	0.028476	1	8108	8108		11.511	0	1	65236			62535	3108	51568	51618	68632	68632					0.07029491134358068
VSPSSAKVIFV	11	Unmodified	_VSPSSAKVIFV_					0	0	0		ENST00000380138.3_1_5:83476291-83680146:-|nuORF	ENST00000380138.3_1_5:83476291-83680146:-|nuORF	ENST00000380138.3_1_5:83476291-83680146:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3297119140625	2	567.331882	1132.64921	-2.6412	-0.0014984	-1.2123	-0.00068778	-3.8535	-0.0021862	567.3310908608092	141.92	3.9983	140.91	138.91	142.91	-1.0106					224	80	5	0	0	0	0.7046	1	11761	11761		28.081	3.5623	1	127690			62536	11143	51569	51619	68633	68633					0.08819158199935373
VSPTWLLI	8	Unmodified	_VSPTWLLI_					0	0	0			REV__ENSG00000135587|ENST00000258052|SMPD2	REV__ENSG00000135587|ENST00000258052|SMPD2	MULTI-MSMS	OvCa99_classI_Rep5	1	464.7801818847656	2	464.778754	927.542954	2.0172	0.00093755	0.43799	0.00020357	2.4552	0.0011411	464.7788431718824	134.28	0.93726	134.28	133.63	134.56	0					43	19	3	0	0	0	0.66704	1	15576	15576		50.025	9.4519	1	148990	+		62537	19301	51570	51620	68634	68634					0.07628447425292961
VSPVPSYLVL	10	Unmodified	_VSPVPSYLVL_					0	0	0		ENST00000511410.5_1_5:140021383-140021704:+|nuORF;ENST00000505086.2_1_5:140019102-140021704:+|nuORF	ENST00000511410.5_1_5:140021383-140021704:+|nuORF	ENST00000511410.5_1_5:140021383-140021704:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.8106689453125	2	537.3157	1072.61685	0.32363	0.00017389	-2.9906	-0.0016069	-2.667	-0.001433	537.311316528684	67.43	0.64407	63.94	63.64	64.284	-3.4902					29	12	3	0	0	0	0.026915	1	4918	4918		27.882	1.1893	1	90602			62538	12889	51571	51621	68635	68635					0.08344370796953626
VSPVQISFF	9	Unmodified	_VSPVQISFF_					0	0	0		ZNF534|p.R496Gfs*4|1|0.11|ENSG00000198633|chr19:52438905-52438906|-/GGGC|frameshift_variant;ENSG00000198633|ENST00000433050|ZNF534;nc|ENSG00000198633|Q76KX8|ZNF534	ZNF534|p.R496Gfs*4|1|0.11|ENSG00000198633|chr19:52438905-52438906|-/GGGC|frameshift_variant	ZNF534|p.R496Gfs*4|1|0.11|ENSG00000198633|chr19:52438905-52438906|-/GGGC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.7493896484375	2	512.279118	1022.54368	0.66664	0.00034151	3.4821	0.0017838	4.1487	0.0021253	512.2803225233035	159.67	0.33408	159.67	159.52	159.86	0					9	6	2	0	0	0	0.027462	1	18718	18718		26.693	0	1	17127			62539	8838	51572	51622	68636	68636					0.03331242074330021
VSPVRLLL	8	Unmodified	_VSPVRLLL_					0	0	0		ENST00000264995.7_1_3:131181529-131181616:-|nuORF	ENST00000264995.7_1_3:131181529-131181616:-|nuORF	ENST00000264995.7_1_3:131181529-131181616:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	448.7997741699219	2	448.80002	895.585488	0.73618	0.0003304	-0.70585	-0.00031678	0.030333	1.3614E-05	448.7995819385941	119.43	1.6759	118.4	117.98	119.66	-1.0271					86	33	4	0	0	0	0.42208	3	9052	9041;9046;9052		85.359	0	1	762460			62540	9940	51573	51623	68637;68638;68639	68639					0.13351842553538518
VSPVRLLL	8	Unmodified	_VSPVRLLL_					0	0	0		ENST00000264995.7_1_3:131181529-131181616:-|nuORF	ENST00000264995.7_1_3:131181529-131181616:-|nuORF	ENST00000264995.7_1_3:131181529-131181616:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	448.79986572265625	2	448.80002	895.585488	-0.92415	-0.00041476	0.78799	0.00035365	-0.13616	-6.1108E-05	448.8002911925649	119.74	1.6635	118.39	117.98	119.65	-1.3444					91	31	4	0	0	0	0.45246	4	11246	11224;11246;11270;11303		82.305	0	1	858030			62541	9940	51573	51623	68640;68641;68642;68643	68641					0.13351842553538518
VSQAGAVHG	9	Unmodified	_VSQAGAVHG_					0	0	0		EP400|p.D2035Afs*2|1|0.12|ENSG00000183495|chr12:132037992-132037993|-/C|frameshift_variant;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400;nc|ENSG00000183495|Q96L91-4|EP400	EP400|p.D2035Afs*2|1|0.12|ENSG00000183495|chr12:132037992-132037993|-/C|frameshift_variant	EP400|p.D2035Afs*2|1|0.12|ENSG00000183495|chr12:132037992-132037993|-/C|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	412.7130432128906	2	413.214309	824.414065	-0.61587	-0.00025449	0.73464	0.00030356	0.11877	4.9076E-05	413.2151515920776	120.4	1.1472	119.05	118.35	119.5	-1.3444					46	21	3	0	0	0	0.027462	1	11318	11318		12.207	3.3845	1	81053			62542	8079	51574	51624	68644	68644					-0.005165144849456738
VSQAGAVHG	9	Unmodified	_VSQAGAVHG_					0	0	0		EP400|p.D2035Afs*2|1|0.12|ENSG00000183495|chr12:132037992-132037993|-/C|frameshift_variant;nc|ENSG00000183495|Q96L91-3|EP400;nc|ENSG00000183495|Q96L91-5|EP400;ENSG00000183495|ENST00000389561|EP400;nc|ENSG00000183495|Q96L91|EP400;nc|ENSG00000183495|Q96L91-4|EP400	EP400|p.D2035Afs*2|1|0.12|ENSG00000183495|chr12:132037992-132037993|-/C|frameshift_variant	EP400|p.D2035Afs*2|1|0.12|ENSG00000183495|chr12:132037992-132037993|-/C|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	413.214309	824.414065	1.7676	0.00073042	-0.88643	-0.00036629	0.88122	0.00036413	413.21425602246364	120.03	1.675	119.01	118.08	119.75	-1.0271	-0.022252	-0.00071065	NaN	12.207	65	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95085			62543	8079	51574	51624							-0.005165144849456738
VSQHISLTI	9	Unmodified	_VSQHISLTI_					0	0	0			REV__ENST00000478631.6_2_1:53460811-53461279:+|nuORF	REV__ENST00000478631.6_2_1:53460811-53461279:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	499.28826904296875	2	499.287474	996.560395	-1.1559	-0.0005771	0.43608	0.00021773	-0.71978	-0.00035938	499.2876340721799	91.351	1.3453	89.327	88.879	90.225	-2.0241					77	26	4	0	0	0	0.1804	2	5728	5728;5756		79.713	0.26157	1	1681400	+		62544	26418	51575	51625	68645;68646	68645					0.061977429602734446
VSQPARSGL	9	Unmodified	_VSQPARSGL_					0	0	0			REV__ENST00000315266.9_1_14:66974855-66975026:+|nuORF	REV__ENST00000315266.9_1_14:66974855-66975026:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	457.7565612792969	2	457.756341	913.498129	-1.8607	-0.00085173	1.5428	0.00070621	-0.31789	-0.00014552	457.7569376081696	49.899	1.7496	46.758	46.507	48.256	-3.1416					101	33	5	0	0	0	0.18887	3	2841	2831;2841;2867		78.264	14.958	1	729260	+		62545	24395	51576	51626	68647;68648;68649	68648					0.03792016611953386
VSQVGKEL	8	Unmodified	_VSQVGKEL_					0	0	0		ENSG00000168209|ENST00000307365|DDIT4;DDIT4|p.A145Gfs*50|1|0.24|ENSG00000168209|chr10:72274916-72274917|-/G|frameshift_variant	ENSG00000168209|ENST00000307365|DDIT4	ENSG00000168209|ENST00000307365|DDIT4	MULTI-MSMS	OvCa99_classI_Rep5	1	430.24725341796875	2	430.247818	858.481082	-0.18473	-7.948E-05	0.32937	0.00014171	0.14464	6.2232E-05	430.2478921244521	47.834	1.2118	47.834	47.595	48.807	0					38	27	2	0	0	0	0.28739	1	3478	3478		109.48	16.283	1	3029100			62546	717	51577	51627	68650	68650					0.04618096006140604
VSQVRQLQ	8	Unmodified	_VSQVRQLQ_					0	0	0		ENSG00000160460|ENST00000598249|SPTBN4;nc|ENSG00000160460|Q9H254-3|SPTBN4;nc|ENSG00000160460|Q9H254-4|SPTBN4;nc|ENSG00000160460|Q9H254-5|SPTBN4	ENSG00000160460|ENST00000598249|SPTBN4	ENSG00000160460|ENST00000598249|SPTBN4	MULTI-SECPEP	OvCa99_classI_Rep5	1	479.2604675292969	2	479.277441	956.540328	-0.10152	-4.8658E-05	-0.17359	-8.3196E-05	-0.27511	-0.00013185	479.2772697438799	52.368	0.61426	52.368	52.127	52.741	0					32	13	3	0	0	0	0.028476	1	4146	4146		68.787	10.005	1	1391400			62547	6068	51578	51628	68651	68651					0.06031992020314192
VSRFRRLH	8	Unmodified	_VSRFRRLH_					0	0	0			REV__ECM1|p.F499Lfs*17|1|0.03|ENSG00000143369|chr1:150513337-150513338|-/T|frameshift_variant	REV__ECM1|p.F499Lfs*17|1|0.03|ENSG00000143369|chr1:150513337-150513338|-/T|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.307373046875	2	535.820141	1069.62573	0.66924	0.00035859	1.9207	0.0010292	2.59	0.0013878	535.8208110250858	81.452	0.37009	81.452	81.162	81.532	0					13	8	2	0	0	0	0.028476	1	8394	8394		35.618	8.9254	1	177070	+		62548	16344	51579	51629	68652	68652					0.09370201996648575
VSRFRRLH	8	Unmodified	_VSRFRRLH_					0	0	0			REV__ECM1|p.F499Lfs*17|1|0.03|ENSG00000143369|chr1:150513337-150513338|-/T|frameshift_variant	REV__ECM1|p.F499Lfs*17|1|0.03|ENSG00000143369|chr1:150513337-150513338|-/T|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	535.820141	1069.62573	-0.077232	-4.1383E-05	-0.83139	-0.00044547	-0.90862	-0.00048686	535.8202496999468	84.061	0.45629	81.8	81.611	82.067	-2.261	0.1743	-0.0016722	NaN	35.618	15	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27349	+		62549	16344	51579	51629							0.09370201996648575
VSRFRVRMYFH	11	Unmodified	_VSRFRVRMYFH_					0	0	0		ENST00000510923.5_1_3:131217001-131221665:-|nuORF	ENST00000510923.5_1_3:131217001-131221665:-|nuORF	ENST00000510923.5_1_3:131217001-131221665:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	500.8072814941406	3	499.934712	1496.78231	-0.71462	-0.00035727	2.2265	0.0011131	1.5119	0.00075583	500.27018630912426	74.767	0.77736	72.356	72.093	72.87	-2.4106					33	15	4	0	0	0	0.026221	1	3794	3794		14.086	1.1285	1	65523			62550	12978	51580	51630	68653	68653					0.0537869910479003
VSRFRVRMYFH	11	Unmodified	_VSRFRVRMYFH_					0	0	0		ENST00000510923.5_1_3:131217001-131221665:-|nuORF	ENST00000510923.5_1_3:131217001-131221665:-|nuORF	ENST00000510923.5_1_3:131217001-131221665:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	499.934712	1496.78231	-0.85832	-0.0004291	2.3587	0.0011792	1.5004	0.00075009	499.93560382362443	74.531	0.6769	72.56	72.271	72.948	-1.9711	0.10199	0.00015132	NaN	14.086	26	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41735			62551	12978	51580	51630							0.0537869910479003
VSRGIKIP	8	Unmodified	_VSRGIKIP_					0	0	0			REV__nc|ENSG00000163681|Q14BN4-6|SLMAP	REV__nc|ENSG00000163681|Q14BN4-6|SLMAP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	435.2421875	2	435.281995	868.549437	-0.39621	-0.00017246	0.36698	0.00015974	-0.029228	-1.2722E-05	435.2820241440721	53.637	0.40699	50.389	50.212	50.619	-3.2474					10	7	2	0	0	0	0.028476	1	3267	3267		37.159	11.709	1	10679	+		62552	28968	51581	51631	68654	68654					0.10990385376646827
VSRGPCRQP	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))VSRGPCRQP_					1	0	0			REV__ENST00000583244.1_1_17:72954766-72955083:-|nuORF	REV__ENST00000583244.1_1_17:72954766-72955083:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.2682495117188	2	521.26655	1040.51855	-1.2057	-0.00062851	1.4465	0.00075401	0.24075	0.00012549	521.266661833476	88.878	1.4382	86.276	85.882	87.321	-2.6027					85	28	4	0	0	0	0.35444	1	7611	7611		56.721	9.0637	1	402370	+		62553	27835	51582	51632	68655	68655					-9.135999903264747E-05
VSRKKVAL	8	Unmodified	_VSRKKVAL_					0	0	0		ENST00000437071.5_1_22:27068919-27134146:+|nuORF	ENST00000437071.5_1_22:27068919-27134146:+|nuORF	ENST00000437071.5_1_22:27068919-27134146:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.76104736328125	2	450.803094	899.591636	0.2885	0.00013006	2.7153	0.0012241	3.0038	0.0013541	450.8042102022484	62.885	0.24026	59.427	59.21	59.45	-3.4577					6	4	2	0	0	0	0.028476	1	4371	4371		16.473	5.6076	1	52243			62554	11884	51583	51633	68656	68656					0.13782360785035053
VSRKPRPPHT	10	Unmodified	_VSRKPRPPHT_					0	0	0		nc|ENSG00000144847|Q5DX21-3|IGSF11;nc|ENSG00000144847|Q5DX21-2|IGSF11;ENSG00000144847|ENST00000393775|IGSF11	nc|ENSG00000144847|Q5DX21-3|IGSF11	nc|ENSG00000144847|Q5DX21-3|IGSF11	MULTI-MSMS	OvCa99_classI_Rep5	1	587.8475952148438	2	587.843813	1173.67307	2.1374	0.0012565	3.1746	0.0018662	5.312	0.0031226	587.8456426252047	107.42	1.9618	107.42	107.14	109.11	0					101	45	5	0	0	0	0.5675	1	12101	12101		45.972	0.95004	1	20291000			62555	5186	51584	51634	68657	68657					0.09318436476974057
VSRLHLKN	8	Unmodified	_VSRLHLKN_					0	0	0			REV__nc|ENSG00000135476|Q14674-2|ESPL1	REV__nc|ENSG00000135476|Q14674-2|ESPL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.73333740234375	2	483.795801	965.577048	1.102	0.00053313	3.3952	0.0016426	4.4972	0.0021757	483.7971739562589	139.12	0.4864	139.12	138.83	139.32	0					16	9	2	0	0	0	0.028476	1	16207	16207		34.173	3.6689	1	23946	+		62556	19292	51585	51635	68658	68658					0.09288288636889774
VSRPGGRNAL	10	Unmodified	_VSRPGGRNAL_					0	0	0			REV__ENST00000494873.1_1_1:51702296-51736909:+|nuORF	REV__ENST00000494873.1_1_1:51702296-51736909:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	513.7947387695312	2	513.793789	1025.57303	1.119	0.00057493	1.3162	0.00067625	2.4352	0.0012512	513.7943991863143	128.58	1.0865	127.49	127.22	128.31	-1.0933					43	21	3	0	0	0	0.75313	1	10127	10127		24.519	2.5593	1	164730	+		62557	26734	51586	51636	68659	68659					0.061261991431820206
VSRPLLGLI	9	Unmodified	_VSRPLLGLI_					0	0	0		ENSG00000204764|ENST00000523189|RANBP17;ENST00000522533.5_1_5:170395310-170725859:+|nuORF;ENST00000519949.5_1_5:170395310-170725859:+|nuORF	ENSG00000204764|ENST00000523189|RANBP17	ENSG00000204764|ENST00000523189|RANBP17	MULTI-MSMS	OvCa9_classI_Rep3	3	484.3182373046875	2	484.318577	966.622602	-0.71351	-0.00034557	0.30616	0.00014828	-0.40734	-0.00019728	484.318588992095	115.68	1.0854	114.64	114.35	115.44	-1.0414					53	21	3	0	0	0	0.51865	1	8604	8604		40.778	3.6191	1	180240			62558	9028	51587	51637	68660	68660					0.13795514099274442
VSRRGEVY	8	Unmodified	_VSRRGEVY_					0	0	0			REV__ENSG00000155367|ENST00000309276|PPM1J	REV__ENSG00000155367|ENST00000309276|PPM1J	MULTI-SECPEP	OvCa99_classI_Rep5	1	483.27386474609375	2	483.261791	964.509028	-0.74409	-0.00035959	-0.22159	-0.00010709	-0.96568	-0.00046668	483.26142717888445	44.402	0.22397	44.402	44.26	44.484	0					6	4	2	0	0	0	0.028476	1	3004	3004		60.294	0	1	64467	+		62559	20423	51588	51638	68661	68661					0.02535418986235527
VSRTKPAL	8	Unmodified	_VSRTKPAL_					0	0	0		nc|ENSG00000197322|A2RUQ5|TMEM132E-DT	nc|ENSG00000197322|A2RUQ5|TMEM132E-DT	nc|ENSG00000197322|A2RUQ5|TMEM132E-DT	MULTI-SECPEP	OvCa99_classI_Rep5	1	436.2532958984375	2	436.271627	870.528701	-0.12018	-5.2432E-05	0.22144	9.6606E-05	0.10125	4.4173E-05	436.2715333446073	37.17	0.32055	37.17	36.931	37.251	0					10	6	2	0	0	0	0.028476	1	2005	2005		68.787	28.009	1	42395			62560	15249	51589	51639	68662	68662					0.0882579499698295
VSRVILVG	8	Unmodified	_VSRVILVG_					0	0	0		ENST00000310160.7_1_19:49253265-49253331:-|nuORF	ENST00000310160.7_1_19:49253265-49253331:-|nuORF	ENST00000310160.7_1_19:49253265-49253331:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	421.7731628417969	2	421.776545	841.538538	0.35255	0.0001487	-0.35346	-0.00014908	-0.00090843	-3.8315E-07	421.7762679282595	84.233	1.3292	81.571	81.314	82.643	-2.6629					67	27	3	0	0	0	0.64026	1	7078	7078		55.504	0	1	773250			62561	10282	51590	51640	68663	68663					0.1114298300237806
VSRVLLALL	9	Unmodified	_VSRVLLALL_					0	0	0		ENST00000342350.9_2_17:43112307-43138336:-|nuORF	ENST00000342350.9_2_17:43112307-43138336:-|nuORF	ENST00000342350.9_2_17:43112307-43138336:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.2967224121094	2	492.334227	982.653902	0.038433	1.8922E-05	-0.25784	-0.00012694	-0.21941	-0.00010802	492.33397145980115	98.816	1.1452	97.923	97.658	98.803	-0.89305					41	22	3	0	0	0	0.027462	1	9031	9031		40.778	7.9657	1	46617			62562	10577	51591	51641	68664	68664					0.1618808713335511
VSRVTTASLWP	11	Unmodified	_VSRVTTASLWP_					0	0	0			REV__nc|ENSG00000004939|P02730-2|SLC4A1	REV__nc|ENSG00000004939|P02730-2|SLC4A1	MULTI-MSMS	OvCa9_classI_Rep2	2	608.8359375	2	608.837862	1215.66117	-3.9036	-0.0023766	2.3802	0.0014491	-1.5234	-0.0009275	608.8391511731406	151.54	1.2369	151.31	150.94	152.18	-0.22697					74	24	4	0	0	0	0.71789	1	15400	15400		23.523	0.94304	1	158260	+		62563	16386	51592	51642	68665	68665					0.06196774943123273
VSSELVVGIA	10	Unmodified	_VSSELVVGIA_					0	0	0			REV__tr|A0A553ST34|A0A553ST34_NIACICationdiffusionfacilitatorfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_04200PE=4SV=1	REV__tr|A0A553ST34|A0A553ST34_NIACICationdiffusionfacilitatorfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_04200PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	487.27996826171875	2	487.281857	972.549162	-0.17128	-8.3459E-05	-0.55791	-0.00027186	-0.72919	-0.00035532	487.2815643110269	94.239	2.596	93.14	92.644	95.24	-1.0995					171	51	6	0	0	0	0.24387	5	8471	8471;8483;8489;8497;8515		87.754	21.382	1	3277500	+		62564	30911	51593	51643	68666;68667;68668;68669;68670	68666					0.0617892086613665
VSSELVVGIA	10	Unmodified	_VSSELVVGIA_					0	0	0			REV__tr|A0A553ST34|A0A553ST34_NIACICationdiffusionfacilitatorfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_04200PE=4SV=1	REV__tr|A0A553ST34|A0A553ST34_NIACICationdiffusionfacilitatorfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_04200PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	487.28216552734375	2	487.281857	972.549162	-1.0485	-0.0005109	0.41711	0.00020325	-0.63137	-0.00030765	487.2819843698998	95.08	2.6649	93.185	92.561	95.226	-1.8956					196	52	7	0	0	0	0.3976	2	6228	6228;6247		68.787	9.3404	1	4110600	+		62565	30911	51593	51643	68671;68672	68671					0.0617892086613665
VSSHTGGYCN	10	Unmodified	_VSSHTGGYCN_					0	0	0			REV__tr|A0A7D6VRM4|A0A7D6VRM4_9CLOTDUF3189familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12750PE=4SV=1	REV__tr|A0A7D6VRM4|A0A7D6VRM4_9CLOTDUF3189familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12750PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	512.2542724609375	2	512.711273	1023.40799	-2.0311	-0.0010414	0.9901	0.00050764	-1.041	-0.00053373	512.7116447339029	87.738	1.0084	85.111	84.85	85.858	-2.6269					40	19	3	0	0	0	0.026782	1	7473	7473		37.812	18.452	1	126770	+		62566	31429	51594	51644	68673	68673					-0.1027740077878434
VSSKGSSAQH	10	Unmodified	_VSSKGSSAQH_					0	0	0		ENSG00000122547|ENST00000242108|EEPD1	ENSG00000122547|ENST00000242108|EEPD1	ENSG00000122547|ENST00000242108|EEPD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.2492980957031	2	494.246338	986.478122	1.2733	0.00062932	2.7211	0.0013449	3.9943	0.0019742	494.24752708817437	96.962	1.4081	94.536	94.22	95.628	-2.4256					74	27	4	0	0	0	0.53885	1	8579	8579		49.442	1.5259	1	607260			62567	3540	51595	51645	68674	68674					-0.015657791186754366
VSSLLVDEIP	10	Unmodified	_VSSLLVDEIP_					0	0	0			REV__ENST00000398028.3_1_6:151149346-151149517:+|nuORF	REV__ENST00000398028.3_1_6:151149346-151149517:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.8612060546875	2	536.300247	1070.58594	1.3661	0.00073262	3.6634	0.0019647	5.0295	0.0026973	536.3022379965776	130.94	0.52431	130.94	130.63	131.15	0					15	10	2	0	0	0	0.027056	1	15165	15165		20.947	0	1	36830	+		62568	18252	51596	51646	68675	68675					0.05347172692040658
VSSPSISTPPI	11	Unmodified	_VSSPSISTPPI_					0	0	0		nc|ENSG00000165494|O94913|PCF11;ENSG00000165494|ENST00000690938|PCF11	nc|ENSG00000165494|O94913|PCF11	nc|ENSG00000165494|O94913|PCF11	MULTI-MSMS	OvCa9_classI_Rep3	3	542.7969970703125	2	542.797872	1083.58119	-2.5657	-0.0013927	1.6016	0.00086937	-0.96407	-0.00052329	542.7985901751956	143.31	1.137	142.32	141.94	143.08	-0.9903					51	22	3	0	0	0	0.69081	1	11930	11930		32.812	3.6424	1	119450			62569	6567	51597	51647	68676	68676					0.042742885492771165
VSSSNQEEPK	10	Unmodified	_VSSSNQEEPK_					0	0	0		ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	ENSG00000159433|ENST00000290607|STARD9	MULTI-SECPEP	OvCa9_classI_Rep2	2	552.8038940429688	2	552.762017	1103.50948	1.788	0.00098837	-1.0573	-0.00058443	0.73076	0.00040393	552.761024366346	41.876	0.29552	39.167	39.029	39.324	-2.7097					9	5	2	0	0	0	0.026734	1	2217	2217		39.253	0	1	9438.5			62570	6011	51598	51648	68677	68677					-0.038132508752369176
VSSTLVLNGR	10	Unmodified	_VSSTLVLNGR_					0	0	0			REV__ENST00000546859.5_1_12:69979244-69981900:+|nuORF	REV__ENST00000546859.5_1_12:69979244-69981900:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	523.3048706054688	2	523.303655	1044.59276	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.73	1	139.24	138.74	139.74	-1.4952								0	0	0	0.13679	1	13738	13738		30.318	2.2362	1		+		62571	27428	51599	51649	68678	68678					0.07224530363282611
VSSWVSERA	9	Unmodified	_VSSWVSERA_					0	0	0		ENST00000274026.9_1_4:122744913-122744994:-|nuORF	ENST00000274026.9_1_4:122744913-122744994:-|nuORF	ENST00000274026.9_1_4:122744913-122744994:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	510.2987060546875	2	510.759081	1019.50361	-0.22522	-0.00011503	3.1245	0.0015959	2.8993	0.0014808	510.7606869996671	98.84	0.62133	97.155	96.852	97.474	-1.685					14	11	2	0	0	0	0.027462	1	6626	6626		21.96	0	1	25277			62572	10012	51600	51650	68679	68679					-0.005363045962440083
VSTAFVYTKN	10	Unmodified	_VSTAFVYTKN_					0	0	0		APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB	APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant	APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.8248901367188	2	565.298039	1128.58152	2.5121	0.0014201	-1.0824	-0.00061188	1.4297	0.00080821	565.2979812862003	110.59	0.53632	110.59	110.27	110.8	0					35	11	4	0	0	0	0.026906	1	12515	12515		41.427	4.9799	1	339740			62573	102	51601	51651	68680	68680					0.02237708269126415
VSTAFVYTKN	10	Unmodified	_VSTAFVYTKN_					0	0	0		APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB	APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant	APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	565.298039	1128.58152	0.18255	0.0001032	-1.8595	-0.0010512	-1.6769	-0.00094797	565.2982913203737	110.75	1.5292	110.61	110.24	111.77	-0.13961	0.00092474	0.00043881	NaN	27.047	69	30	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41882			62574	102	51601	51651							0.02237708269126415
VSTAFVYTKN	10	Unmodified	_VSTAFVYTKN_					0	0	0		APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB	APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant	APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	565.298039	1128.58152	1.3862	0.00078362	-4.8902	-0.0027644	-3.504	-0.0019808	565.2975882111696	111.68	1.3823	110.58	110.2	111.58	-1.1038	-0.028109	-0.0029877	NaN	27.047	61	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58661			62575	102	51601	51651							0.02237708269126415
VSTAFVYTKN	10	Unmodified	_VSTAFVYTKN_					0	0	0		APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant;ENSG00000084674|ENST00000233242|APOB	APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant	APOB|p.R4105Sfs*16|1|0.41|ENSG00000084674|chr2:21003083-21003107|CTCAGCATTGTTCTGCAGATTTCTT/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	565.298039	1128.58152	1.2314	0.00069612	-2.7187	-0.0015369	-1.4873	-0.00084078	565.2977222079219	112.17	1.4388	110.65	110.05	111.49	-1.5111	0.048014	-0.00053265	NaN	27.047	73	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61690			62576	102	51601	51651							0.02237708269126415
VSTCKRNWSVL	11	Unmodified	_VSTCKRNWSVL_					0	0	0		OVOL1|p.E21V|1|0.4|ENSG00000172818|chr11:65787435-65787435|A/T|missense_variant	OVOL1|p.E21V|1|0.4|ENSG00000172818|chr11:65787435-65787435|A/T|missense_variant	OVOL1|p.E21V|1|0.4|ENSG00000172818|chr11:65787435-65787435|A/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	646.8421020507812	2	646.842622	1291.67069	1.614	0.001044	-3.9703	-0.0025681	-2.3562	-0.0015241	646.8400288661467	130.57	0.81213	130.57	130.34	131.15	0					41	16	3	0	0	0	0.63942	1	15155	15155		41.08	1.0219	1	287460			62577	15471	51602	51652	68681	68681					0.03652219957007219
VSTEEGKGKI	10	Unmodified	_VSTEEGKGKI_					0	0	0		SCN3A|p.Y1443Tfs*18|1|0.09|ENSG00000153253|chr2:165095615-165095615|A/-|frameshift_variant;nc|ENSG00000153253|Q9NY46-4|SCN3A;nc|ENSG00000153253|Q9NY46-2|SCN3A;nc|ENSG00000153253|Q9NY46|SCN3A;ENSG00000153253|ENST00000283254|SCN3A	SCN3A|p.Y1443Tfs*18|1|0.09|ENSG00000153253|chr2:165095615-165095615|A/-|frameshift_variant	SCN3A|p.Y1443Tfs*18|1|0.09|ENSG00000153253|chr2:165095615-165095615|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	524.2884521484375	2	524.287671	1046.56079	-1.062	-0.0005568	0.81695	0.00042831	-0.24506	-0.00012848	524.2882742456546	39.779	3.3775	39.779	39.505	42.883	0					203	76	6	0	0	0	0.5675	1	2346	2346		45.972	3.5761	1	97899000			62578	5673	51603	51653	68682	68682					0.03937117889495312
VSTGEPFTNI	10	Unmodified	_VSTGEPFTNI_					0	0	0		ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	ENSG00000181143|ENST00000397910|MUC16	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.7628784179688	2	532.766571	1063.51859	-2.3357	-0.0012444	-4.3047	-0.0022934	-6.6404	-0.0035378	532.7643813734192	119.79	1.6656	118.45	117.88	119.55	-1.3444					90	31	5	0	0	0	0.64697	1	11316	11316		36.447	0	1	553200			62579	7920	51604	51654	68683	68683					-0.010628575189002731
VSTIYVGRL	9	Unmodified	_VSTIYVGRL_					0	0	0			REV__ENSG00000134243|ENST00000256637|SORT1	REV__ENSG00000134243|ENST00000256637|SORT1	MULTI-MSMS	OvCa9_classI_Rep3	3	504.29840087890625	2	504.297842	1006.58113	-0.082287	-4.1497E-05	-0.36053	-0.00018182	-0.44282	-0.00022331	504.2976378271559	104.41	3.9037	102.97	102.5	106.4	-1.4347					184	75	5	0	0	0	0.37135	1	7304	7304		54.776	0.01164	1	927760	+		62580	19184	51605	51655	68684	68684					0.07810333339955378
VSTLEPLGATL	11	Unmodified	_VSTLEPLGATL_					0	0	0			REV__ENST00000481749.5_1_3:138374233-138426144:-|nuORF	REV__ENST00000481749.5_1_3:138374233-138426144:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	550.8140258789062	2	550.813522	1099.61249	0.78518	0.00043249	2.2867	0.0012595	3.0718	0.001692	550.815149169163	66.552	1.7833	63.856	63.517	65.3	-2.6958					64	35	3	0	0	0	0.67529	1	5167	5167		37.812	0	1	348540	+		62581	16688	51606	51656	68685	68685					0.06666861583380523
VSTLSGALWV	10	Unmodified	_VSTLSGALWV_					0	0	0			REV__ENST00000497139.5_1_6:43746046-43752296:+|nuORF	REV__ENST00000497139.5_1_6:43746046-43752296:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	516.7892456054688	2	516.78985	1031.56515	-0.31406	-0.0001623	-3.8839	-0.0020071	-4.1979	-0.0021695	516.7876762043535	70.661	0.66922	70.661	70.13	70.8	0					37	16	3	0	0	0	0.22395	1	6791	6791		90.777	0.40684	1	4183300	+		62582	26714	51607	51657	68686	68686					0.050626271030296266
VSTLSVTPVP	10	Unmodified	_VSTLSVTPVP_					0	0	0			REV__ENSG00000183354|ENST00000399933|KIAA2026	REV__ENSG00000183354|ENST00000399933|KIAA2026	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.2681884765625	2	500.289682	998.564812	1.3139	0.00065734	1.3628	0.00068177	2.6767	0.0013391	500.2901835263518	147.19	0.54037	147.19	146.91	147.45	0					26	10	3	0	0	0	0.028033	1	17241	17241		66.429	0	1	169730	+		62583	22359	51608	51658	68687	68687					0.06547207383175646
VSTNKPTSI	9	Unmodified	_VSTNKPTSI_					0	0	0		tr|A0A553SMN3|A0A553SMN3_NIACINAD-dependentepimerase/dehydratasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_22890PE=3SV=1	tr|A0A553SMN3|A0A553SMN3_NIACINAD-dependentepimerase/dehydratasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_22890PE=3SV=1	tr|A0A553SMN3|A0A553SMN3_NIACINAD-dependentepimerase/dehydratasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_22890PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.7646179199219	2	473.763832	945.513111	0.54807	0.00025966	-0.88245	-0.00041807	-0.33438	-0.00015842	473.7633142764397	56.24	1.2651	52.945	52.567	53.832	-3.2944					70	24	4	0	0	0	0.24951	1	3617	3617		68.787	1.2932	1	1136500			62584	33854	51609	51659	68688	68688					0.03817463689279066
VSTSHLLIL	9	Unmodified	_VSTSHLLIL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OvCa9_classI_Rep2	2	491.79962158203125	2	491.800217	981.585882	0.45767	0.00022508	-0.86132	-0.0004236	-0.40365	-0.00019852	491.7997614216502	106.26	3.1068	105.82	105.5	108.61	-0.43642					130	62	3	0	0	0	0.14739	3	9933	9885;9891;9933		85.359	13.482	1	1827600			62585	6376	51610	51660	68689;68690;68691	68691					0.09435217482723601
VSTSHLLIL	9	Unmodified	_VSTSHLLIL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OvCa9_classI_Rep3	3	491.80047607421875	2	491.800217	981.585882	0.015139	7.4454E-06	-0.71075	-0.00034955	-0.69561	-0.0003421	491.79978875845774	107.24	3.4509	105.98	105.67	109.12	-1.267					161	66	5	0	0	0	0.14739	3	7600	7588;7594;7600		85.359	26.1	1	2343100			62586	6376	51610	51660	68692;68693;68694	68694					0.09435217482723601
VSTSHLLIL	9	Unmodified	_VSTSHLLIL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	491.8006591796875	2	491.800217	981.585882	-1.7475	-0.00085943	1.401	0.00068899	-0.34656	-0.00017044	491.80078103129136	107.83	3.5166	105.95	105.59	109.11	-1.8785					134	68	3	0	0	0	0.16524	2	9878	9854;9878		82.305	15.876	1	2385200			62587	6376	51610	51660	68695;68696	68696					0.09435217482723601
VSTSHLLIL	9	Unmodified	_VSTSHLLIL_					0	0	0		ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	ENSG00000163902|ENST00000296255|RPN1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	491.800217	981.585882	-0.039426	-1.939E-05	1.3504	0.00066415	1.311	0.00064476	491.80060629340545	105.51	0.39397	105.51	105.18	105.57	0	-0.30688	0.0017014	NaN	85.359	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123850			62588	6376	51610	51660							0.09435217482723601
VSTVKKLA	8	Unmodified	_VSTVKKLA_					0	0	0			REV__nc|ENSG00000179869|Q86UQ4|ABCA13	REV__nc|ENSG00000179869|Q86UQ4|ABCA13	MULTI-MSMS	OvCa9_classI_Rep4_	4	423.27532958984375	2	423.276378	844.538203	0.49298	0.00020867	-3.7053	-0.0015684	-3.2124	-0.0013597	423.27473332954634	141.2	1.9317	139.74	139.4	141.33	-1.4627					94	36	4	0	0	0	0.74394	1	13830	13830		13.775	0	1	1644700	+		62589	22143	51611	51661	68697	68697					0.10971563282510033
VSVAPMLL	8	Unmodified	_VSVAPMLL_					0	0	0			REV__ENSG00000128789|ENST00000317615|PSMG2	REV__ENSG00000128789|ENST00000317615|PSMG2	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.5379333496094	2	415.246232	828.477911	0.08099	3.3631E-05	2.9148	0.0012103	2.9957	0.001244	415.24736522269654	37.776	0.22874	37.776	37.668	37.896	0					6	4	2	0	0	0	0.028476	1	2088	2088		20.482	10.297	1	15644	+		62590	18869	51612	51662	68698	68698					0.05681129627782866
VSVASAISVI	10	Unmodified	_VSVASAISVI_					0	0	0		tr|A0A7D6ZVW1|A0A7D6ZVW1_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05760PE=4SV=1	tr|A0A7D6ZVW1|A0A7D6ZVW1_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05760PE=4SV=1	tr|A0A7D6ZVW1|A0A7D6ZVW1_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05760PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	473.2850646972656	2	473.2844	944.554247	1.5808	0.00074819	-2.0147	-0.00095353	-0.43387	-0.00020535	473.283312291307	87.947	1.6214	86.516	85.99	87.611	-1.4311					81	32	4	0	0	0	0.52321	1	7705	7705		51.335	0	1	353920			62591	35817	51613	51663	68699	68699					0.07975224728750163
VSVDFMEGTTY	11	Unmodified	_VSVDFMEGTTY_					0	0	0			REV__SCN2A|p.D1935Vfs*2|1|0.11|ENSG00000136531|chr2:165389608-165389609|-/GTTT|frameshift_variant	REV__SCN2A|p.D1935Vfs*2|1|0.11|ENSG00000136531|chr2:165389608-165389609|-/GTTT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	416.85498046875	3	416.853278	1247.538	0.73538	0.00030655	0.36416	0.0001518	1.0995	0.00045835	416.8533139158009	62.601	0.84119	62.601	62.378	63.219	0					53	20	5	0	0	0	0.65947	1	5579	5579		34.087	0	1	6023800	+		62592	19391	51614	51664	68700	68700					-0.07586269290277414
VSVGEIPE	8	Unmodified	_VSVGEIPE_					0	0	0			REV__tr|A0A553SSQ8|A0A553SSQ8_NIACIM20/M25/M40familymetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_03525PE=4SV=1	REV__tr|A0A553SSQ8|A0A553SSQ8_NIACIM20/M25/M40familymetallo-hydrolaseOS=NialliacirculansOX=1397GN=CEQ21_03525PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	415.220458984375	2	415.218726	828.422899	0.50297	0.00020884	1.1912	0.00049463	1.6942	0.00070347	415.2190721203063	56.319	1.344	56.319	56.094	57.438	0					51	31	3	0	0	0	0.68714	1	4658	4658		45.952	3.4775	1	3166600	+		62593	30866	51615	51665	68701	68701					0.001824143608587292
VSVGIVIVSL	10	Unmodified	_VSVGIVIVSL_					0	0	0		ENST00000396953.6_2_3:12882746-12883025:-|nuORF	ENST00000396953.6_2_3:12882746-12883025:-|nuORF	ENST00000396953.6_2_3:12882746-12883025:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	493.318115234375	2	493.318243	984.621933	-0.29859	-0.0001473	-0.49169	-0.00024256	-0.79028	-0.00038986	493.31794941561196	103.58	2.8206	103	102.39	105.21	-0.57639					183	56	5	0	0	0	0.11378	1	9622	9622		110.12	11.49	1	4529700			62594	11329	51616	51666	68702	68702					0.12900674659545075
VSVGWETTL	9	Unmodified	_VSVGWETTL_					0	0	0		nc|ENSG00000171606|Q96GC6-3|ZNF274;nc|ENSG00000171606|Q96GC6-2|ZNF274;ENSG00000171606|ENST00000617501|ZNF274;nc|ENSG00000171606|Q96GC6-4|ZNF274;ENST00000595146.1_1_19:58722883-58724506:+|nuORF	nc|ENSG00000171606|Q96GC6-3|ZNF274	nc|ENSG00000171606|Q96GC6-3|ZNF274	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.2591552734375	2	496.258382	990.502212	-1.1503	-0.00057084	-2.1491	-0.0010665	-3.2994	-0.0016373	496.257659816652	48.722	1.9634	45.615	44.838	46.801	-3.1077					80	37	3	0	0	0	0.16524	1	2721	2721		82.305	10.062	1	653910			62595	7218	51617	51667	68703	68703					0.006580613149935743
VSVHSNLNS	9	Unmodified	_VSVHSNLNS_					0	0	0		ENSG00000067334|ENST00000436063|DNTTIP2	ENSG00000067334|ENST00000436063|DNTTIP2	ENSG00000067334|ENST00000436063|DNTTIP2	MULTI-MSMS	OvCa99_classI_Rep5	1	478.74273681640625	2	478.743431	955.472308	-0.057959	-2.7747E-05	-0.099505	-4.7638E-05	-0.15746	-7.5385E-05	478.74330278239637	47.23	0.65347	47.23	46.985	47.638	0					28	14	3	0	0	0	0.42676	1	3398	3398		49.442	1.5259	1	870390			62596	1374	51618	51668	68704	68704					-0.007208776303400555
VSVKVLVLDK	10	Unmodified	_VSVKVLVLDK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OvCa9_classI_Rep3	3	550.3585815429688	2	550.357899	1098.70125	0.94567	0.00052046	-1.0264	-0.00056488	-0.080715	-4.4422E-05	550.3571718874979	123.64	1.1329	122.61	122.36	123.49	-1.0377					40	21	3	0	0	0	0.58067	1	9553	9553		44.377	1.981	1	83854			62597	5793;36288	51619	51669	68705	68705					0.1558432161368728
VSVLAEALGW	10	Unmodified	_VSVLAEALGW_					0	0	0			REV__nc|ENSG00000009694|Q9UKZ4-2|TENM1	REV__nc|ENSG00000009694|Q9UKZ4-2|TENM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.824951171875	2	522.78985	1043.56515	1.7168	0.00089753	-2.6157	-0.0013675	-0.89893	-0.00046995	522.7883290353932	77.275	0.37659	77.275	77.085	77.461	0					18	8	3	0	0	0	0.026871	1	7764	7764		37.159	0	1	368930	+		62598	16466	51620	51670	68706	68706					0.04510627103013576
VSVLAQVCLL	10	Unmodified	_VSVLAQVCLL_					0	0	0			REV__nc|ENSG00000164818|Q86Y56-2|DNAAF5	REV__nc|ENSG00000164818|Q86Y56-2|DNAAF5	MULTI-MSMS	OvCa99_classI_Rep5	1	522.8095092773438	2	522.809728	1043.6049	0.79646	0.0004164	-1.8761	-0.00098086	-1.0797	-0.00056446	522.8085992447949	144.69	0.68085	144.69	144.45	145.13	0					27	13	3	0	0	0	0.46756	1	16922	16922		58.782	14.665	1	301180	+		62599	21022	51621	51671	68707	68707					0.08484430782095842
VSVLKEKY	8	Unmodified	_VSVLKEKY_					0	0	0			REV__ENSG00000163687|ENST00000394549|DNASE1L3	REV__ENSG00000163687|ENST00000394549|DNASE1L3	MULTI-SECPEP	OvCa99_classI_Rep5	1	482.73187255859375	2	483.286943	964.559333	-0.39883	-0.00019275	-2.8698	-0.001387	-3.2687	-0.0015797	483.28567407148296	35.966	0.41218	35.966	35.707	36.119	0					15	8	3	0	0	0	0.028476	1	1850	1850		42.396	0	1	43026	+		62600	20872	51622	51672	68708	68708					0.07563528591379054
VSVLQNSKD	9	Unmodified	_VSVLQNSKD_					0	0	0		nc|ENSG00000088280|Q8TDY4-3|ASAP3;ENSG00000088280|ENST00000336689|ASAP3	nc|ENSG00000088280|Q8TDY4-3|ASAP3	nc|ENSG00000088280|Q8TDY4-3|ASAP3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.3020324707031	2	495.266739	988.518924	-1.9739	-0.00097759	-0.40134	-0.00019877	-2.3752	-0.0011764	495.2659646732821	126.7	0.59134	125.29	124.92	125.51	-1.4143					12	11	2	0	0	0	0.027462	1	12070	12070		45.972	0	1	8915.9			62601	1786	51623	51673	68709	68709					0.024205622009503713
VSVMPKKSI	9	Unmodified	_VSVMPKKSI_					0	0	0		ENSG00000171467|ENST00000361428|ZNF318;nc|ENSG00000171467|Q5VUA4-2|ZNF318;ZNF318|p.E1199Dfs*2|1|0.03|ENSG00000171467|chr6:43340401-43340401|C/-|frameshift_variant	ENSG00000171467|ENST00000361428|ZNF318	ENSG00000171467|ENST00000361428|ZNF318	MULTI-MSMS	OvCa99_classI_Rep5	1	494.7958068847656	2	494.79662	987.578688	-0.7359	-0.00036412	-2.6361	-0.0013043	-3.3719	-0.0016684	494.7949972517665	68.294	0.65317	68.294	67.996	68.649	0					30	15	3	0	0	0	0.37135	1	6446	6446		54.776	1.8396	1	1151600			62602	7198	51624	51674	68710	68710					0.08440161610621999
VSVPRDPQKNE	11	Unmodified	_VSVPRDPQKNE_					0	0	0		ENST00000587859.1_1_19:29704218-29706237:+|nuORF;ENST00000590607.1_1_19:29704218-29706237:+|nuORF	ENST00000587859.1_1_19:29704218-29706237:+|nuORF	ENST00000587859.1_1_19:29704218-29706237:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	423.93597412109375	3	423.557964	1267.65206	0.050041	2.1195E-05	-1.7814	-0.00075451	-1.7313	-0.00073332	423.55710283965817	70.496	0.5929	70.496	70.246	70.839	0					35	14	3	0	0	0	0.025624	1	6737	6737		32.034	4.3902	1	1402800			62603	14070	51625	51675	68711	68711					0.028943815868160527
VSVPRVLKL	9	Unmodified	_VSVPRVLKL_					0	0	0			REV__nc|ENSG00000068028|Q9NS23-3|RASSF1	REV__nc|ENSG00000068028|Q9NS23-3|RASSF1	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.27593994140625	2	505.839677	1009.6648	-1.5892	-0.00080389	1.1719	0.0005928	-0.4173	-0.00021109	505.84011347817113	85.47	1.5448	83.25	82.792	84.337	-2.2204					76	30	4	0	0	0	0.027411	1	5006	5006		54.776	1.8396	1	305140	+		62604	16847	51626	51676	68712	68712					0.16035489507646616
VSVPSIGGL	9	Unmodified	_VSVPSIGGL_					0	0	0		ENST00000573953.1_1_16:3108066-3108384:-|nuORF	ENST00000573953.1_1_16:3108066-3108384:-|nuORF	ENST00000573953.1_1_16:3108066-3108384:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	414.2542724609375	2	414.744911	827.475269	0.13443	5.5754E-05	1.5411	0.00063917	1.6755	0.00069492	414.7455734333555	77.968	1.1472	75.152	74.825	75.973	-2.8165					43	23	4	0	0	0	0.027134	1	6227	6227		55.504	0	1	122640			62605	13924	51627	51677	68713	68713					0.05462997494487354
VSVRPAAL	8	Unmodified	_VSVRPAAL_					0	0	0			REV__ENST00000046640.7_1_17:3539773-3540031:+|nuORF	REV__ENST00000046640.7_1_17:3539773-3540031:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	406.7541198730469	2	406.75307	811.491587	1.4584	0.00059319	-1.8701	-0.00076065	-0.4117	-0.00016746	406.75222437717747	75.366	1.2065	72.136	71.867	73.074	-3.2308					63	24	3	0	0	0	0.50674	1	5932	5932		76.847	13.868	1	669320	+		62606	23674	51628	51678	68714	68714					0.07830123451208237
VSVSTLSL	8	Unmodified	_VSVSTLSL_					0	0	0		nc|ENSG00000110148|P32239-3|CCKBR;ENSG00000110148|ENST00000334619|CCKBR;nc|ENSG00000110148|P32239-2|CCKBR	nc|ENSG00000110148|P32239-3|CCKBR	nc|ENSG00000110148|P32239-3|CCKBR	MULTI-SECPEP	OvCa9_classI_Rep2	2	402.5869140625	2	403.236919	804.459284	2.2037	0.0008886	0.033507	1.3511E-05	2.2372	0.00090211	403.23689351790085	66.337	1.0432	63.641	63.17	64.213	-2.6958					37	20	3	0	0	0	0.028476	1	5185	5185		33.516	0	1	22947			62607	2759	51629	51679	68715	68715					0.04923291257580331
VSVSTLSL	8	Unmodified	_VSVSTLSL_					0	0	0		nc|ENSG00000110148|P32239-3|CCKBR;ENSG00000110148|ENST00000334619|CCKBR;nc|ENSG00000110148|P32239-2|CCKBR	nc|ENSG00000110148|P32239-3|CCKBR	nc|ENSG00000110148|P32239-3|CCKBR	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	403.236919	804.459284	2.3939	0.00096532	-0.50768	-0.00020472	1.8862	0.0007606	403.23663079107644	67.08	0.69333	63.589	63.344	64.037	-3.4902	-0.02569	-0.00019393	NaN	33.516	22	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34771			62608	2759	51629	51679							0.04923291257580331
VSVVSESLTPE	11	Unmodified	_VSVVSESLTPE_					0	0	0		ENSG00000134250|ENST00000256646|NOTCH2	ENSG00000134250|ENST00000256646|NOTCH2	ENSG00000134250|ENST00000256646|NOTCH2	MULTI-MSMS	OvCa99_classI_Rep5	1	573.7965698242188	2	573.798069	1145.58158	1.2843	0.00073691	-3.9994	-0.0022948	-2.7151	-0.0015579	573.7956015018508	147.52	1.6122	147.52	147.21	148.82	0					77	32	4	0	0	0	0.26031	1	17271	17271		71.877	13.648	1	871400			62609	4270	51630	51680	68716	68716					0.014616634784715643
VSWARGPP	8	Unmodified	_VSWARGPP_					0	0	0		ENST00000221566.6_1_19:2754860-2755205:-|nuORF	ENST00000221566.6_1_19:2754860-2755205:-|nuORF	ENST00000221566.6_1_19:2754860-2755205:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	435.23590087890625	2	435.235045	868.455536	1.562	0.00067982	0.14863	6.4691E-05	1.7106	0.00074451	435.23502170861644	124.24	0.55032	124.24	124.06	124.61	0					19	11	2	0	0	0	0.64026	1	14337	14337		55.504	9.5523	1	133910			62610	9692	51631	51681	68717	68717					0.01604666274374722
VSWDIRNI	8	Unmodified	_VSWDIRNI_					0	0	0		ENST00000501830.2_1_15:30917398-30917659:-|nuORF	ENST00000501830.2_1_15:30917398-30917659:-|nuORF	ENST00000501830.2_1_15:30917398-30917659:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.7825012207031	2	501.771991	1001.52943	-0.057229	-2.8716E-05	-0.52622	-0.00026404	-0.58345	-0.00029276	501.7718446852214	71.016	0.39114	71.016	70.8	71.191	0					21	9	3	0	0	0	0.028476	1	6811	6811		60.972	0	1	3563600			62611	12843	51632	51682	68718	68718					0.028725896460514377
VSWFLGHVSN	10	Unmodified	_VSWFLGHVSN_					0	0	0			REV__ENST00000223095.4_1_7:100781305-100781398:+|nuORF	REV__ENST00000223095.4_1_7:100781305-100781398:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	573.2915649414062	2	573.290548	1144.56654	0.8407	0.00048197	0.5067	0.00029049	1.3474	0.00077245	573.2906276182567	156.63	1.7634	156.63	156.09	157.85	0					68	34	3	0	0	0	0.59317	1	18376	18376		42.864	2.2917	1	149720	+		62612	23753	51633	51683	68719	68719					4.2611918161128415E-05
VSWSTAHSL	9	Unmodified	_VSWSTAHSL_					0	0	0		tr|A0A7D6ZZA7|A0A7D6ZZA7_9CLOTAmidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05555PE=4SV=1	tr|A0A7D6ZZA7|A0A7D6ZZA7_9CLOTAmidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05555PE=4SV=1	tr|A0A7D6ZZA7|A0A7D6ZZA7_9CLOTAmidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05555PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.24853515625	2	494.248349	986.482145	1.2733	0.00062932	-1.3485	-0.0006665	-0.075241	-3.7188E-05	494.24752708817437	96.962	1.4081	94.536	94.22	95.628	-2.4256					74	27	4	0	0	0	0.25214	1	8568	8568		68.485	5.1784	1	607260			62613	35952	51634	51684	68720	68720					-0.01163689624968356
VSWTALVHVKA	11	Unmodified	_VSWTALVHVKA_					0	0	0		ENST00000522899.1_1_8:144461534-144462449:+|nuORF;ENSG00000158106|ENST00000289013|RHPN1	ENST00000522899.1_1_8:144461534-144462449:+|nuORF	ENST00000522899.1_1_8:144461534-144462449:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	605.8557739257812	2	605.850773	1209.68699	4.1393	0.0025078	3.6678	0.0022222	7.8072	0.00473	605.852935555119	133.3	2.5623	131.77	131.46	134.02	-1.5257					111	51	4	0	0	0	0.65947	1	12902	12902		39.253	2.0937	1	751530			62614	5931	51635	51685	68721	68721					0.09053669185436775
VSYNRSSPL	9	Unmodified	_VSYNRSSPL_					0	0	0			REV__nc|ENSG00000141258|O43147-5|SGSM2	REV__nc|ENSG00000141258|O43147-5|SGSM2	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.303466796875	2	511.766906	1021.51926	-0.31963	-0.00016357	-0.61474	-0.00031461	-0.93437	-0.00047818	511.7668496047353	67.693	0.42709	67.693	67.489	67.916	0					14	10	2	0	0	0	0.027462	1	6343	6343		39.253	5.0803	1	225790	+		62615	19722	51636	51686	68722	68722					0.009359819208043518
VSYPSAPVGVM	11	Oxidation (M)	_VSYPSAPVGVM(Oxidation (M))_		VSYPSAPVGVM(1)		VSYPSAPVGVM(49)	0	0	1			REV__ENSG00000085998|ENST00000371984|POMGNT1	REV__ENSG00000085998|ENST00000371984|POMGNT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.7774047851562	2	561.778625	1121.5427	3.5797	0.002011	-3.6552	-0.0020534	-0.075419	-4.2369E-05	561.7765558237911	136.61	1.0204	135.07	134.74	135.76	-1.5437					38	20	3	0	0	0	0.54764	1	13249	13249		49.442	7.0454	1	65579	+		62616	17143	51637	51687	68723	68723		403			-0.013213403568897775
VSYSVLTLT	9	Unmodified	_VSYSVLTLT_					0	0	0		ENST00000489985.1_1_1:46661446-46663526:-|nuORF	ENST00000489985.1_1_1:46661446-46663526:-|nuORF	ENST00000489985.1_1_1:46661446-46663526:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	491.77764892578125	2	491.776408	981.538263	2.4951	0.001227	0.10887	5.354E-05	2.604	0.0012806	491.7762280897937	116.1	0.6857	116.1	115.86	116.55	0					25	14	3	0	0	0	0.38529	1	13282	13282		53.351	0	1	275120			62617	12690	51638	51688	68724	68724					0.04675518491865205
VTAGAKCLQL	10	Unmodified	_VTAGAKCLQL_					0	0	0			REV__ENST00000558114.1_1_14:24768105-24768312:-|nuORF	REV__ENST00000558114.1_1_14:24768105-24768312:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.23828125	2	502.283877	1002.5532	-0.3769	-0.00018931	-0.44561	-0.00022383	-0.82252	-0.00041314	502.2836780682306	41.215	0.66772	41.215	40.969	41.637	0					42	14	4	0	0	0	0.026543	1	2560	2560		93.143	18.1	1	529250	+		62618	20518	51639	51689	68725	68725					0.05202687088217317
VTAGGRVTL	9	Unmodified	_VTAGGRVTL_					0	0	0		ENSG00000248385|ENST00000432826|TARM1;nc|ENSG00000248385|B6A8C7-2|TARM1	ENSG00000248385|ENST00000432826|TARM1	ENSG00000248385|ENST00000432826|TARM1	MULTI-MSMS	OvCa99_classI_Rep5	1	437.2611389160156	2	437.261259	872.507966	-0.26987	-0.000118	0.049616	2.1695E-05	-0.22025	-9.6307E-05	437.2613360585854	34.655	0.75246	34.655	34.065	34.818	0					27	15	3	0	0	0	0.55011	1	1684	1684		37.812	0.65241	1	803140			62619	9407	51640	51690	68726	68726					0.0666120461734181
VTAGGRVTL	9	Unmodified	_VTAGGRVTL_					0	0	0		ENSG00000248385|ENST00000432826|TARM1;nc|ENSG00000248385|B6A8C7-2|TARM1	ENSG00000248385|ENST00000432826|TARM1	ENSG00000248385|ENST00000432826|TARM1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	437.261259	872.507966	1.0789	0.00047176	-1.0422	-0.00045571	0.03671	1.6052E-05	437.26080981782286	37.52	0.34885	34.627	34.442	34.791	-2.8925	-0.014218	-0.00087343	NaN	37.812	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12174			62620	9407	51640	51690							0.0666120461734181
VTAKMKTLEL	10	Unmodified	_VTAKMKTLEL_					0	0	0			REV__ENST00000237177.10_1_6:90583761-90583800:+|nuORF	REV__ENST00000237177.10_1_6:90583761-90583800:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3292846679688	2	567.333567	1132.65258	-2.3399	-0.0013275	-4.3394	-0.0024619	-6.6793	-0.0037894	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.60504	1	14513	14513		41.427	6.2746	1	241060	+		62621	23808	51641	51691	68727	68727					0.09156084982305401
VTALDVVGLF	10	Unmodified	_VTALDVVGLF_					0	0	0			REV__nc|ENSG00000167103|Q5T9C9-2|PIP5KL1	REV__nc|ENSG00000167103|Q5T9C9-2|PIP5KL1	MULTI-MSMS	OvCa99_classI_Rep5	1	517.2999877929688	2	517.30005	1032.58555	1.1022	0.00057019	0.7539	0.00038999	1.8561	0.00096018	517.3002267274945	119.72	0.75906	119.72	119.43	120.18	0					42	18	3	0	0	0	0.42962	1	13726	13726		64.207	2.0999	1	1422200	+		62622	21251	51642	51692	68728	68728					0.07055797762859584
VTALLKIGK	9	Unmodified	_VTALLKIGK_					0	0	0		tr|A0A553SFC7|A0A553SFC7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_08660PE=4SV=1	tr|A0A553SFC7|A0A553SFC7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_08660PE=4SV=1	tr|A0A553SFC7|A0A553SFC7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_08660PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.7673034667969	2	471.820953	941.627353	-0.2043	-9.6393E-05	-0.40367	-0.00019046	-0.60797	-0.00028685	471.82055624415995	55.328	0.60975	52.034	51.854	52.464	-3.2944					21	11	2	0	0	0	0.027072	1	3523	3523		79.713	8.4169	1	56765			62623	33025	51643	51693	68729	68729					0.15420398242054034
VTALLKIGK	9	Unmodified	_VTALLKIGK_					0	0	0		tr|A0A553SFC7|A0A553SFC7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_08660PE=4SV=1	tr|A0A553SFC7|A0A553SFC7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_08660PE=4SV=1	tr|A0A553SFC7|A0A553SFC7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_08660PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	471.820953	941.627353	-1.1407	-0.00053821	1.1879	0.00056048	0.047212	2.2276E-05	471.8213312971001	54.961	0.60022	52.147	51.872	52.472	-2.8139	0.056572	0.00080487	NaN	79.713	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16946			62624	33025	51643	51693							0.15420398242054034
VTALQDKAP	9	Unmodified	_VTALQDKAP_					0	0	0			REV__nc|ENSG00000127603|O94854|MACF1	REV__nc|ENSG00000127603|O94854|MACF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.7669372558594	2	471.766374	941.518196	0.05395	2.5452E-05	-0.42053	-0.00019839	-0.36658	-0.00017294	471.7660425312953	55.63	1.8744	52.336	52.008	53.883	-3.2944					88	36	5	0	0	0	0.041116	3	3513	3513;3523;3539		125.81	10.657	1	1283900	+		62625	28838	51644	51694	68730;68731;68732	68730					0.045097675518945834
VTALQDKAP	9	Unmodified	_VTALQDKAP_					0	0	0			REV__nc|ENSG00000127603|O94854|MACF1	REV__nc|ENSG00000127603|O94854|MACF1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	471.766374	941.518196	-1.0715	-0.00050549	1.5819	0.00074631	0.51046	0.00024082	471.7667814862243	55.363	1.6418	52.55	51.673	53.314	-2.8139	0.10681	0.0015299	NaN	125.81	60	32	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	218650	+		62626	28838	51644	51694							0.045097675518945834
VTALQDKAP	9	Unmodified	_VTALQDKAP_					0	0	0			REV__nc|ENSG00000127603|O94854|MACF1	REV__nc|ENSG00000127603|O94854|MACF1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	471.766374	941.518196	0.05395	2.5452E-05	-0.42053	-0.00019839	-0.36658	-0.00017294	471.7660425312953	55.63	1.8744	52.336	52.008	53.883	-3.2944	-0.10681	-0.00035951	NaN	125.81	88	36	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1283900	+		62627	28838	51644	51694							0.045097675518945834
VTALRLSTP	9	Unmodified	_VTALRLSTP_					0	0	0			REV__nc|ENSG00000159363|Q9NQ11-2|ATP13A2	REV__nc|ENSG00000159363|Q9NQ11-2|ATP13A2	MULTI-MSMS	OvCa9_classI_Rep2	2	479.2890319824219	2	479.290017	956.565481	0.48542	0.00023266	-0.92112	-0.00044148	-0.4357	-0.00020882	479.28944941406894	42.946	1.3362	40.237	39.917	41.253	-2.7097					73	26	4	0	0	0	0.62352	1	2382	2382		29.15	1.2673	1	745960	+		62628	28955	51645	51695	68733	68733					0.0854604682289164
VTAPTPKRRKE	11	Unmodified	_VTAPTPKRRKE_					0	0	0			REV__ENST00000182527.3_1_6:52364724-52364970:-|nuORF	REV__ENST00000182527.3_1_6:52364724-52364970:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	641.881591796875	2	641.883136	1281.75172	-4.0037	-0.0025699	2.6785	0.0017193	-1.3252	-0.00085062	642.3862707583961	149.94	3.9275	149.71	147.52	151.45	-0.22696					225	78	5	0	0	0	0.7046	1	15114	15114		28.081	11.364	1	222110	+		62629	23690	51646	51696	68734	68734					0.12211243991396259
VTARDPDI	8	Unmodified	_VTARDPDI_					0	0	0		ENSG00000150394|ENST00000577390|CDH8	ENSG00000150394|ENST00000577390|CDH8	ENSG00000150394|ENST00000577390|CDH8	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.2806091308594	2	443.735074	885.455596	3.0253	0.0013424	-0.64874	-0.00028787	2.3766	0.0010546	443.73468744435485	76.562	0.59826	76.562	76.324	76.922	0					24	14	2	0	0	0	0.028476	1	7688	7688		39.253	7.723	1	821550			62630	5505	51647	51697	68735	68735					0.008286214837085026
VTARSVFGKK	10	Unmodified	_VTARSVFGKK_					0	0	0		ENSG00000134899|ENST00000652225|ERCC5;nc|ENSG00000134899|P28715-2|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	ENSG00000134899|ENST00000652225|ERCC5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.7855224609375	2	546.82984	1091.64513	-1.2775	-0.00069858	0.41427	0.00022654	-0.86324	-0.00047204	546.8300137692823	41.868	0.81827	38.888	38.542	39.361	-2.9804					30	15	3	0	0	0	0.026891	1	1922	1922		31.53	5.9558	1	74190			62631	4343	51648	51698	68736	68736					0.10297113496903876
VTATAVIINL	10	Unmodified	_VTATAVIINL_					0	0	0		nc|ENSG00000131620|Q5XXA6-2|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;nc|ENSG00000131620|Q5XXA6-3|ANO1;ANO1|p.I577Sfs*11|1|0.24|ENSG00000131620|chr11:70161311-70161312|-/GC|frameshift_variant;ENSG00000047617|ENST00000682330|ANO2;nc|ENSG00000047617|Q9NQ90-2|ANO2;nc|ENSG00000047617|Q9NQ90|ANO2	nc|ENSG00000131620|Q5XXA6-2|ANO1	nc|ENSG00000131620|Q5XXA6-2|ANO1	MULTI-MSMS	OvCa99_classI_Rep5	1	507.8155517578125	2	507.813325	1013.6121	2.173	0.0011035	-0.11999	-6.0932E-05	2.053	0.0010425	507.81315166760425	95.634	1.3398	95.634	95.37	96.71	0					72	31	4	0	0	0	0.37436	1	10489	10489		71.877	7.6702	1	2074300			62632	4077	51649	51699	68737	68737					0.10583486654184071
VTATRSSAL	9	Unmodified	_VTATRSSAL_					0	0	0			REV__ENSG00000092445|ENST00000263798|TYRO3	REV__ENSG00000092445|ENST00000263798|TYRO3	MULTI-MSMS	OvCa9_classI_Rep4_	4	453.25750732421875	2	453.256174	904.497795	0.3071	0.00013919	-1.0776	-0.00048843	-0.7705	-0.00034923	453.2556337621711	62.692	0.8271	59.234	58.962	59.789	-3.4577					34	16	4	0	0	0	0.38529	1	4367	4367		53.351	0	1	366920	+		62633	17268	51650	51700	68738	68738					0.0417259689210141
VTAVEYIVAQ	10	Unmodified	_VTAVEYIVAQ_					0	0	0			REV__ENSG00000180638|ENST00000433844|SLC47A2	REV__ENSG00000180638|ENST00000433844|SLC47A2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.7855224609375	2	546.800414	1091.58628	-1.306	-0.00071412	-1.2811	-0.00070049	-2.5871	-0.0014146	546.799566014339	42.009	0.71226	39.028	38.853	39.566	-2.9804					14	13	2	0	0	0	0.026871	1	1922	1922		21.96	5.4867	1	40635	+		62634	22183	51651	51701	68739	68739					0.04414592411899321
VTAVLLVKFF	10	Unmodified	_VTAVLLVKFF_					0	0	0		tr|A0A553SG15|A0A553SG15_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09905PE=4SV=1	tr|A0A553SG15|A0A553SG15_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09905PE=4SV=1	tr|A0A553SG15|A0A553SG15_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_09905PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	568.852783203125	2	568.857535	1135.70052	-6.0827	-0.0034602	-1.2812	-0.00072885	-7.364	-0.0041891	568.856661515311	161.9	1.6548	160.28	159.93	161.59	-1.6239					133	43	5	0	0	0	0.72319	1	15991	15991		27.882	0	1	804000			62635	33104	51652	51702	68740	68740					0.1380952696465556
VTAVLRQYRY	10	Unmodified	_VTAVLRQYRY_					0	0	0			REV__sp|Q6SWC5|UL05_HCMVMProteinUL5OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL5PE=3SV=1	REV__sp|Q6SWC5|UL05_HCMVMProteinUL5OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL5PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	634.8591918945312	2	634.859129	1267.70371	-0.66778	-0.00042395	-0.88367	-0.00056101	-1.5515	-0.00098495	634.8585524737888	96.166	2.5594	95.138	94.813	97.373	-1.0281					149	51	5	0	0	0	0.49558	1	8674	8674		54.776	6.1748	1	1938200	+		62636	29428	51653	51703	68741	68741					0.08056170071358792
VTAVLRQYRY	10	Unmodified	_VTAVLRQYRY_					0	0	0			REV__sp|Q6SWC5|UL05_HCMVMProteinUL5OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL5PE=3SV=1	REV__sp|Q6SWC5|UL05_HCMVMProteinUL5OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL5PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	634.8594970703125	2	634.859129	1267.70371	-0.44071	-0.00027979	-0.89403	-0.00056758	-1.3347	-0.00084738	634.8585186686879	97.001	2.7047	95.173	94.827	97.532	-1.8286					162	52	5	0	0	0	0.48198	2	6419	6419;6432		56.721	5.5284	1	2573100	+		62637	29428	51653	51703	68742;68743	68742					0.08056170071358792
VTAVMRAML	9	Unmodified	_VTAVMRAML_					0	0	0			REV__ENSG00000135632|ENST00000389501|SMYD5	REV__ENSG00000135632|ENST00000389501|SMYD5	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.2636413574219	2	496.274998	990.535443	-0.95183	-0.00047237	-0.73395	-0.00036424	-1.6858	-0.00083661	496.27466126317245	44.327	0.35929	44.327	44.169	44.528	0					10	7	2	0	0	0	0.027461	1	2998	2998		40.778	0	1	235500	+		62638	19307	51654	51704	68744	68744					0.03979648561698923
VTAYRSSEV	9	Unmodified	_VTAYRSSEV_					0	0	0			REV__MID1-SPAG17|2|fusion	REV__MID1-SPAG17|2|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	506.2589111328125	2	506.258914	1010.50327	-0.0082329	-4.168E-06	-0.72144	-0.00036523	-0.72967	-0.0003694	506.2584999623091	80.238	2.521	78.542	77.819	80.34	-1.6951					182	49	6	0	0	0	0.38969	1	6736	6736		52.937	3.4007	1	1626600	+		62639	20441	51655	51705	68745	68745					-0.0015572431608461557
VTAYRSSEV	9	Unmodified	_VTAYRSSEV_					0	0	0			REV__MID1-SPAG17|2|fusion	REV__MID1-SPAG17|2|fusion	MULTI-MSMS	OvCa9_classI_Rep3	3	506.2593078613281	2	506.258914	1010.50327	-0.50726	-0.0002568	0.36554	0.00018506	-0.14172	-7.1748E-05	506.2592188272637	80.284	3.2748	77.944	77.563	80.838	-2.3399					161	64	6	0	0	0	0.21231	1	4397	4397		74.255	2.9593	1	3690200	+		62640	20441	51655	51705	68746	68746					-0.0015572431608461557
VTCFWMIL	8	Unmodified	_VTCFWMIL_					0	0	0		chr16:14935397-14937374|98|76.74|0.0|22.87|+|2|PKD1P3,None|1	chr16:14935397-14937374|98|76.74|0.0|22.87|+|2|PKD1P3,None|1	chr16:14935397-14937374|98|76.74|0.0|22.87|+|2|PKD1P3,None|1	MULTI-SECPEP	OvCa9_classI_Rep3	3	506.8120422363281	2	506.753367	1011.49218	-0.90676	-0.0004595	-3.4634	-0.0017551	-4.3702	-0.0022146	506.7514619861924	88.774	1.433	86.643	86.315	87.748	-2.1309					62	28	3	0	0	0	0.028476	1	5465	5465		54.765	0	1	295650			62641	369	51656	51706	68747	68747					-0.013105412155937302
VTCINCAAKKI	11	Unmodified	_VTCINCAAKKI_					0	0	0			REV__ENSG00000143669|ENST00000389793|LYST	REV__ENSG00000143669|ENST00000389793|LYST	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.34814453125	2	582.317394	1162.62024	-1.1974	-0.00069724	-2.8025	-0.0016319	-3.9999	-0.0023292	582.315516941214	26.717	0.19909	26.717	26.642	26.841	0					5	3	2	0	0	0	0.025344	1	730	730		49.536	19.218	1	26428	+		62642	19860	51657	51707	68748	68748					0.04542974307628356
VTDAVPELQI	10	Unmodified	_VTDAVPELQI_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000037665	REV__CON__ENSEMBL:ENSBTAP00000037665	MULTI-MSMS	OvCa99_classI_Rep5	1	542.7989501953125	2	542.797872	1083.58119	1.3483	0.00073184	0.058999	3.2025E-05	1.4073	0.00076387	542.7977847144131	147.03	0.8853	147.03	146.62	147.5	0					52	17	4	0	0	0	0.67931	1	17220	17220		32.812	0	1	813350	+	+	62643	16177	51658	51708	68749	68749					0.04274288549299854
VTDEFEEGI	9	Unmodified	_VTDEFEEGI_					0	0	0		ENSG00000166170|ENST00000299204|BAG5;nc|ENSG00000166170|Q9UL15-2|BAG5	ENSG00000166170|ENST00000299204|BAG5	ENSG00000166170|ENST00000299204|BAG5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.7781372070312	2	519.734937	1037.45532	-0.76312	-0.00039662	-2.6584	-0.0013816	-3.4215	-0.0017783	519.7331740264221	79.747	0.52695	76.996	76.75	77.277	-2.7514					17	10	2	0	0	0	0.027462	1	6464	6464		35.618	21.481	1	28432			62644	6647	51659	51709	68750	68750					-0.06190843026774928
VTDFPHSTL	9	Unmodified	_VTDFPHSTL_					0	0	0			REV__ENST00000435239.1_1_7:32511604-32512018:+|nuORF	REV__ENST00000435239.1_1_7:32511604-32512018:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.77008056640625	2	508.756007	1015.49746	-0.33056	-0.00016818	-3.4263	-0.0017431	-3.7568	-0.0019113	508.7542294902989	54.162	0.61785	54.162	53.929	54.547	0					26	14	3	0	0	0	0.027462	1	4363	4363		23.042	0	1	726310	+		62645	25768	51660	51710	68751	68751					-0.00966822827751912
VTDFPYSVL	9	Unmodified	_VTDFPYSVL_					0	0	0			REV__ENSG00000151729|ENST00000281456|SLC25A4	REV__ENSG00000151729|ENST00000281456|SLC25A4	MULTI-MSMS	OvCa99_classI_Rep5	1	520.7677612304688	2	520.768583	1039.52261	0.016547	8.6173E-06	-3.8341	-0.0019967	-3.8176	-0.0019881	520.7665795556696	73.986	3.2446	73.986	73.678	76.922	0					206	81	5	0	0	0	0.27546	1	7357	7357		65.803	3.6958	1	128020000	+		62646	20252	51661	51711	68752	68752					0.004432319748275404
VTDFPYSVL	9	Unmodified	_VTDFPYSVL_					0	0	0			REV__ENSG00000151729|ENST00000281456|SLC25A4	REV__ENSG00000151729|ENST00000281456|SLC25A4	MULTI-MSMS	OvCa9_classI_Rep2	2	520.7669677734375	2	520.768583	1039.52261	-0.29569	-0.00015399	-3.9226	-0.0020428	-4.2183	-0.0021968	520.7664487988831	76.367	3.2453	74.513	73.837	77.082	-1.854					155	62	5	0	0	0	0.27546	1	6322	6322		65.803	2.8247	1	1235300	+		62647	20252	51661	51711	68753	68753					0.004432319748275404
VTDFPYSVL	9	Unmodified	_VTDFPYSVL_					0	0	0			REV__ENSG00000151729|ENST00000281456|SLC25A4	REV__ENSG00000151729|ENST00000281456|SLC25A4	MULTI-MSMS	OvCa9_classI_Rep3	3	520.767333984375	2	520.768583	1039.52261	-0.63485	-0.00033061	-3.7852	-0.0019712	-4.42	-0.0023018	520.766555060983	76.275	3.5537	73.903	73.518	77.072	-2.3715					215	69	5	0	0	0	0.098892	1	3935	3935		97.473	15.168	1	4347000	+		62648	20252	51661	51711	68754	68754					0.004432319748275404
VTDGPHTDI	9	Unmodified	_VTDGPHTDI_					0	0	0			REV__tr|A0A553SM89|A0A553SM89_NIACIL-iditol2-dehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_22115PE=3SV=1	REV__tr|A0A553SM89|A0A553SM89_NIACIL-iditol2-dehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_22115PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.9349060058594	2	477.729989	953.445425	-0.043615	-2.0836E-05	0.20631	9.856E-05	0.16269	7.7724E-05	477.729949219406	70.388	0.65525	67.818	67.563	68.218	-2.5707					15	12	2	0	0	0	0.027448	1	5610	5610		44.117	5.3107	1	12970	+		62649	30307	51662	51712	68755	68755					-0.03315986241511837
VTDHNLHEL	9	Unmodified	_VTDHNLHEL_					0	0	0		ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	ENSG00000177971|ENST00000403490|IMP3	MULTI-MSMS	OvCa99_classI_Rep5	1	539.2703857421875	2	539.269813	1076.52507	-0.33416	-0.0001802	0.0836	4.5083E-05	-0.25056	-0.00013512	539.2697560326737	47.803	0.73699	47.803	47.595	48.332	0					36	16	3	0	0	0	0.35694	1	3462	3462		56.434	5.0983	1	2319200			62650	7723	51663	51713	68756	68756					-0.010129195675290248
VTDILAGLK	9	Unmodified	_VTDILAGLK_					0	0	0			REV__ENST00000433480.2_1_13:48876566-48877550:-|nuORF	REV__ENST00000433480.2_1_13:48876566-48877550:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	465.2857666015625	2	465.286943	928.559333	1.3406	0.00062376	-2.0993	-0.00097679	-0.75874	-0.00035303	465.28596646402366	125.96	2.9835	124.9	124.53	127.51	-1.0519					156	57	5	0	0	0	0.19758	1	9931	9931		76.774	2.5191	1	4345900	+		62651	25749	51664	51714	68757	68757					0.09219528591381732
VTDILAGLK	9	Unmodified	_VTDILAGLK_					0	0	0			REV__ENST00000433480.2_1_13:48876566-48877550:-|nuORF	REV__ENST00000433480.2_1_13:48876566-48877550:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.2853088378906	2	465.286943	928.559333	-2.3863	-0.0011103	1.7939	0.00083465	-0.59247	-0.00027567	465.2877596727037	126.27	3.4031	124.85	124.48	127.88	-1.4143					181	67	5	0	0	0	0.42676	1	12169	12169		49.442	1.7842	1	4410500	+		62652	25749	51664	51714	68758	68758					0.09219528591381732
VTDKGDRRPD	10	Unmodified	_VTDKGDRRPD_					0	0	0			REV__ENST00000463516.5_1_7:45009010-45014805:-|nuORF	REV__ENST00000463516.5_1_7:45009010-45014805:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.3018798828125	2	579.796726	1157.5789	0.38941	0.00022578	-1.499	-0.0008691	-1.1096	-0.00064333	579.7960534032795	81.363	0.69237	81.363	81.162	81.854	0					23	16	2	0	0	0	0.02676	1	8364	8364		33.922	13.925	1	1371500	+		62653	19376	51665	51715	68759	68759					0.006412528642158577
VTDLLVGLSL	10	Unmodified	_VTDLLVGLSL_					0	0	0		ENSG00000204882|ENST00000377741|GPR20	ENSG00000204882|ENST00000377741|GPR20	ENSG00000204882|ENST00000377741|GPR20	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.3134765625	2	515.313158	1028.61176	-1.5625	-0.00080518	1.4351	0.00073953	-0.1274	-6.5653E-05	515.3137105845175	146.43	3.1469	145	143.73	146.88	-1.4357					100	61	3	0	0	0	0.6104	1	14376	14376		40.778	0	1	109990			62654	9035	51666	51716	68760	68760					0.09860066934356837
VTDLRLWL	8	Unmodified	_VTDLRLWL_					0	0	0		ENSG00000204869|ENST00000377697|IGFL4	ENSG00000204869|ENST00000377697|IGFL4	ENSG00000204869|ENST00000377697|IGFL4	MULTI-MSMS	OvCa9_classI_Rep2	2	508.30230712890625	2	508.300384	1014.58622	1.4265	0.00072511	1.171	0.00059521	2.5975	0.0013203	508.30093068725466	90.387	2.8271	89.085	88.433	91.26	-1.302					94	54	2	0	0	0	0.70469	1	7998	7998		42.396	5.237	1	695110			62655	9034	51667	51717	68761	68761					0.07950637202554844
VTDLRLWL	8	Unmodified	_VTDLRLWL_					0	0	0		ENSG00000204869|ENST00000377697|IGFL4	ENSG00000204869|ENST00000377697|IGFL4	ENSG00000204869|ENST00000377697|IGFL4	MULTI-MSMS	OvCa9_classI_Rep3	3	508.3030090332031	2	508.300384	1014.58622	-0.75191	-0.0003822	3.3863	0.0017213	2.6344	0.0013391	508.3020452283535	89.004	2.3018	86.873	86.112	88.414	-2.1309					130	45	4	0	0	0	0.50674	1	5441	5441		76.847	1.8033	1	1985700			62656	9034	51667	51717	68762	68762					0.07950637202554844
VTDLRLWL	8	Unmodified	_VTDLRLWL_					0	0	0		ENSG00000204869|ENST00000377697|IGFL4	ENSG00000204869|ENST00000377697|IGFL4	ENSG00000204869|ENST00000377697|IGFL4	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.3031005859375	2	508.300384	1014.58622	-0.06012	-3.0559E-05	2.5599	0.0013012	2.4998	0.0012707	508.30166355972597	89.428	2.3042	86.841	86.1	88.404	-2.5874					123	45	4	0	0	0	0.36941	1	7682	7682		94.006	14.294	1	1748000			62657	9034	51667	51717	68763	68763					0.07950637202554844
VTDLRLWL	8	Unmodified	_VTDLRLWL_					0	0	0		ENSG00000204869|ENST00000377697|IGFL4	ENSG00000204869|ENST00000377697|IGFL4	ENSG00000204869|ENST00000377697|IGFL4	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.302734375	2	508.300384	1014.58622	-0.76496	-0.00038883	3.3715	0.0017138	2.6066	0.0013249	508.30206090776204	91.63	3.1704	89.087	88.142	91.312	-2.5425					143	63	4	0	0	0	0.68714	1	7953	7953		45.952	5.1738	1	903450			62658	9034	51667	51717	68764	68764					0.07950637202554844
VTDPIQTK	8	Unmodified	_VTDPIQTK_					0	0	0			REV__ENSG00000041353|ENST00000262094|RAB27B	REV__ENSG00000041353|ENST00000262094|RAB27B	MULTI-SECPEP	OvCa9_classI_Rep2	2	450.76068115234375	2	451.2531	900.491647	0.40754	0.0001839	-0.027697	-1.2498E-05	0.37984	0.0001714	451.25288456029045	62.718	1.0905	59.973	59.548	60.638	-2.7444					36	20	3	0	0	0	0.028476	1	4671	4671		3.41	0	1	90585	+		62659	16631	51668	51718	68765	68765					0.037420786605594
VTDPPPKVLV	10	Unmodified	_VTDPPPKVLV_					0	0	0		ENST00000466409.1_1_9:95874343-95874505:+|nuORF	ENST00000466409.1_1_9:95874343-95874505:+|nuORF	ENST00000466409.1_1_9:95874343-95874505:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	532.82421875	2	532.82115	1063.62775	1.3647	0.00072713	0.80651	0.00042972	2.1712	0.0011568	532.8214085854088	113.9	0.72277	113.9	113.66	114.38	0					35	15	3	0	0	0	0.49558	1	13020	13020		54.776	5.3348	1	948700			62660	12289	51669	51719	68766	68766					0.09847773171213703
VTDPSKNHTL	10	Unmodified	_VTDPSKNHTL_					0	0	0		ENSG00000147003|ENST00000380342|CLTRN	ENSG00000147003|ENST00000380342|CLTRN	ENSG00000147003|ENST00000380342|CLTRN	MULTI-SECPEP	OvCa99_classI_Rep5	1	556.7352905273438	2	556.290745	1110.56694	2.7659	0.0015386	3.8027	0.0021154	6.5686	0.003654	556.2922754465313	102.27	0.72352	102.27	101.95	102.68	0					42	16	4	0	0	0	0.026544	1	11404	11404		76.17	7.3829	1	1206400			62661	5322	51670	51720	68767	68767					0.016076361210025425
VTDREVLGP	9	Unmodified	_VTDREVLGP_					0	0	0		LMBR1-PTPRN2|2|fusion;nc|ENSG00000155093|Q92932-2|PTPRN2	LMBR1-PTPRN2|2|fusion	LMBR1-PTPRN2|2|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	493.2696533203125	2	493.269281	984.52401	-0.468	-0.00023085	1.7048	0.00084093	1.2368	0.00061008	493.26937316700355	68.502	0.58546	68.502	68.315	68.9	0					24	13	2	0	0	0	0.51865	1	6487	6487		40.778	0	1	1491200			62662	14798	51671	51721	68768	68768					0.031128660635886263
VTDYYYPDI	9	Unmodified	_VTDYYYPDI_					0	0	0		CCR8|p.Y113Ffs*19|1|0.04|ENSG00000179934|chr3:39332668-39332669|-/TTAGGAAAGCA|frameshift_variant;ENSG00000179934|ENST00000326306|CCR8	CCR8|p.Y113Ffs*19|1|0.04|ENSG00000179934|chr3:39332668-39332669|-/TTAGGAAAGCA|frameshift_variant	CCR8|p.Y113Ffs*19|1|0.04|ENSG00000179934|chr3:39332668-39332669|-/TTAGGAAAGCA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	574.7611083984375	2	574.760955	1147.50736	1.2987	0.00074642	-1.9958	-0.0011471	-0.69718	-0.00040071	574.7596658597339	148.97	1.671	148.97	148.37	150.05	0					83	33	4	0	0	0	0.22961	1	17447	17447		71.296	1.6681	1	1389500			62663	201	51672	51722	68769	68769					-0.06049679613056469
VTEGPRIKLRR	11	Unmodified	_VTEGPRIKLRR_					0	0	0			REV__tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	REV__tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	442.2584228515625	3	442.277244	1323.8099	1.0887	0.00048151	-0.02012	-8.8988E-06	1.0686	0.00047261	442.61238003363474	45.067	0.26985	45.067	44.932	45.202	0					6	5	2	0	0	0	0.025995	1	3089	3089		17.833	0.6664	1	34280	+		62664	31603	51673	51723	68770	68770					0.16094925636662083
VTEISIHLSSL	11	Unmodified	_VTEISIHLSSL_					0	0	0			REV__ENST00000264203.7_1_1:19665671-19665956:-|nuORF	REV__ENST00000264203.7_1_1:19665671-19665956:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	599.3629150390625	2	599.837528	1197.6605	-1.387	-0.00083198	-3.0505	-0.0018298	-4.4375	-0.0026618	600.3376382700922	126.69	0.44595	125.27	125.07	125.51	-1.4143					10	8	2	0	0	0	0.025861	1	12090	12090		23.523	0	1	9742.8	+		62665	24013	51674	51724	68771	68771					0.06957935503442059
VTELCTEELL	10	Unmodified	_VTELCTEELL_					0	0	0		ENSG00000072195|ENST00000312358|SPEG;nc|ENSG00000072195|Q15772-1|SPEG	ENSG00000072195|ENST00000312358|SPEG	ENSG00000072195|ENST00000312358|SPEG	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.8141479492188	2	575.289022	1148.56349	1.5299	0.00088016	1.0485	0.00060318	2.5784	0.0014833	575.7907291469177	116.7	1.2297	116.7	116.23	117.46	0					57	26	4	0	0	0	0.027255	1	13406	13406		76.774	21.998	1	780520			62666	1468	51675	51725	68772	68772					-0.004847947678854325
VTELPPGPED	10	Unmodified	_VTELPPGPED_					0	0	0		ENSG00000128805|ENST00000249601|ARHGAP22;nc|ENSG00000128805|Q7Z5H3-2|ARHGAP22;nc|ENSG00000128805|Q7Z5H3-5|ARHGAP22	ENSG00000128805|ENST00000249601|ARHGAP22	ENSG00000128805|ENST00000249601|ARHGAP22	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.285888671875	2	527.258579	1052.50261	-1.2448	-0.00065632	-2.525	-0.0013313	-3.7698	-0.0019877	527.2578557650234	103.28	1.1344	102.59	101.79	102.92	-0.68459					50	22	3	0	0	0	0.02661	1	9516	9516		40.778	0	1	16044			62667	3904	51676	51726	68773	68773					-0.021545637557892405
VTELRRPVAV	10	Unmodified	_VTELRRPVAV_					0	0	0		nc|ENSG00000131620|Q5XXA6-2|ANO1;nc|ENSG00000131620|Q5XXA6-4|ANO1;ENSG00000131620|ENST00000355303|ANO1;nc|ENSG00000131620|Q5XXA6-5|ANO1;ENST00000525494.1_1_11:70016194-70034107:+|nuORF	nc|ENSG00000131620|Q5XXA6-2|ANO1	nc|ENSG00000131620|Q5XXA6-2|ANO1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	571.3331909179688	2	570.348397	1138.68224	0.42309	0.00024131	1.4101	0.00080425	1.8332	0.0010456	570.3489542369418	109.61	0.79075	107.89	107.63	108.42	-1.7256					18	14	2	0	0	0	0.027174	1	10115	10115		14.865	0	1	40937			62668	4077	51677	51727	68774	68774					0.11844785042649164
VTERLAVL	8	Unmodified	_VTERLAVL_					0	0	0		ENSG00000110921|ENST00000228510|MVK;ENST00000537237.5_1_12:110017641-110029070:+|nuORF	ENSG00000110921|ENST00000228510|MVK	ENSG00000110921|ENST00000228510|MVK	MULTI-SECPEP	OvCa9_classI_Rep2	2	450.7618103027344	2	450.779285	899.544017	0.63608	0.00028673	1.9655	0.00088602	2.6016	0.0011728	450.7808106901952	62.525	0.45034	59.769	59.437	59.888	-2.7559					10	8	2	0	0	0	0.028476	1	4677	4677		44.117	0	1	9098.8			62669	2804	51678	51728	68775	68775					0.09022661794188025
VTERWKPFLYR	11	Unmodified	_VTERWKPFLYR_					0	0	0		ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	ENSG00000146802|ENST00000312814|TMEM168	MULTI-MSMS	OvCa9_classI_Rep3	3	498.94427490234375	3	498.945383	1493.81432	-0.78365	-0.000391	-3.2889	-0.001641	-4.0725	-0.002032	498.94375426248735	81.253	6.1948	78.93	78.543	84.738	-2.3226					323	125	6	0	0	0	0.71831	1	4555	4555		23.378	4.1152	1	6828400			62670	5306	51679	51729	68776	68776					0.08716390059612422
VTETPPITQP	10	Unmodified	_VTETPPITQP_					0	0	0		nc|ENSG00000205578|A6NF01|POM121B;nc|ENSG00000196313|Q96HA1-2|POM121;nc|ENSG00000196313|Q96HA1-3|POM121;ENSG00000196313|ENST00000434423|POM121	nc|ENSG00000205578|A6NF01|POM121B	nc|ENSG00000205578|A6NF01|POM121B	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.8511962890625	2	541.790047	1081.56554	2.3071	0.00125	-1.2572	-0.00068113	1.0499	0.00056884	541.7891554301389	91.537	0.46184	91.537	91.332	91.794	0					16	10	2	0	0	0	0.026802	1	9851	9851		26.693	0	1	281380			62671	8589	51680	51730	68777	68777					0.02802002032240125
VTEVILYM	8	Unmodified	_VTEVILYM_					0	0	0			REV__ENST00000485775.5_1_1:110582506-110596531:+|nuORF	REV__ENST00000485775.5_1_1:110582506-110596531:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	484.2613525390625	2	484.262079	966.509605	1.0977	0.00053157	-2.664	-0.0012901	-1.5663	-0.00075852	484.26057341030105	123.64	0.54667	123.64	123.37	123.92	0					26	11	3	0	0	0	0.61758	1	14254	14254		60.294	2.4827	1	390080	+		62672	19815	51681	51731	68778	68778					0.02501077591068679
VTEVILYM	8	Unmodified	_VTEVILYM_					0	0	0			REV__ENST00000485775.5_1_1:110582506-110596531:+|nuORF	REV__ENST00000485775.5_1_1:110582506-110596531:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	484.262079	966.509605	1.0977	0.00053157	-2.664	-0.0012901	-1.5663	-0.00075852	484.26057341030105	123.64	0.54667	123.64	123.37	123.92	0	0	0	NaN	60.294	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	390080	+		62673	19815	51681	51731							0.02501077591068679
VTEVPGPL	8	Unmodified	_VTEVPGPL_					0	0	0			REV__nc|ENSG00000198890|Q96LA8-2|PRMT6	REV__nc|ENSG00000198890|Q96LA8-2|PRMT6	MULTI-MSMS	OvCa99_classI_Rep5	1	406.2285461425781	2	406.231636	810.448719	0.50316	0.0002044	-0.064208	-2.6083E-05	0.43895	0.00017832	406.23143984646464	53.496	0.4777	53.496	53.214	53.692	0					19	10	2	0	0	0	0.60486	1	4250	4250		62.978	2.6845	1	1087100	+		62674	23087	51682	51732	68779	68779					0.03591308603131438
VTEVPGPL	8	Unmodified	_VTEVPGPL_					0	0	0			REV__nc|ENSG00000198890|Q96LA8-2|PRMT6	REV__nc|ENSG00000198890|Q96LA8-2|PRMT6	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	406.231636	810.448719	0.50316	0.0002044	-0.064208	-2.6083E-05	0.43895	0.00017832	406.23143984646464	53.496	0.4777	53.496	53.214	53.692	0	0	0	NaN	62.978	19	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1087100	+		62675	23087	51682	51732							0.03591308603131438
VTFGFEEIV	9	Unmodified	_VTFGFEEIV_					0	0	0			REV__tr|A0A7D6VRW5|A0A7D6VRW5_9CLOTTransketolaseOS=ClostridiumintestinaleOX=36845GN=tktPE=3SV=1	REV__tr|A0A7D6VRW5|A0A7D6VRW5_9CLOTTransketolaseOS=ClostridiumintestinaleOX=36845GN=tktPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	520.7671508789062	2	520.768583	1039.52261	-0.29569	-0.00015399	-3.9226	-0.0020428	-4.2183	-0.0021968	520.7664487988831	76.367	3.2453	74.513	73.837	77.082	-1.854					155	62	5	0	0	0	0.27546	2	6334	6307;6334		65.803	12.452	1	1235300	+		62676	31452	51683	51733	68780;68781	68781					0.00443231974804803
VTFGFEEIV	9	Unmodified	_VTFGFEEIV_					0	0	0			REV__tr|A0A7D6VRW5|A0A7D6VRW5_9CLOTTransketolaseOS=ClostridiumintestinaleOX=36845GN=tktPE=3SV=1	REV__tr|A0A7D6VRW5|A0A7D6VRW5_9CLOTTransketolaseOS=ClostridiumintestinaleOX=36845GN=tktPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	520.7667236328125	2	520.768583	1039.52261	-0.63485	-0.00033061	-3.7852	-0.0019712	-4.42	-0.0023018	520.766555060983	76.275	3.5537	73.903	73.518	77.072	-2.3715					215	69	5	0	0	0	0.31747	2	3966	3966;3979		60.972	9.8957	1	4347000	+		62677	31452	51683	51733	68782;68783	68782					0.00443231974804803
VTFGGIPTVL	10	Unmodified	_VTFGGIPTVL_					0	0	0		ENSG00000196187|ENST00000366835|TMEM63A;TMEM63A|p.T197Sfs*31|1|0.17|ENSG00000196187|chr1:225866660-225866661|-/GA|frameshift_variant;ENST00000487817.1_1_1:226059677-226065160:-|nuORF	ENSG00000196187|ENST00000366835|TMEM63A	ENSG00000196187|ENST00000366835|TMEM63A	MULTI-MSMS	OvCa9_classI_Rep4_	4	502.292724609375	2	502.294768	1002.57498	-0.14149	-7.1071E-05	-0.011996	-6.0256E-06	-0.15349	-7.7097E-05	502.29452806371427	122.65	1.1894	121.28	120.96	122.15	-1.3666					60	23	4	0	0	0	0.31157	1	11584	11584		79.451	5.196	1	102310			62678	8575	51684	51734	68784	68784					0.07379815108413368
VTFHIPSLL	9	Unmodified	_VTFHIPSLL_					0	0	0			REV__tr|A0A553SS44|A0A553SS44_NIACIYafYfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02445PE=4SV=1	REV__tr|A0A553SS44|A0A553SS44_NIACIYafYfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02445PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.263671875	2	513.80276	1025.59097	2.2297	0.0011456	-0.31947	-0.00016414	1.9102	0.00098149	513.8024398068644	99.607	0.57826	99.607	99.318	99.896	0					25	13	2	0	0	0	0.027392	1	10999	10999		63.306	7.8021	1	662990	+		62679	30802	51685	51735	68785	68785					0.0791952134532039
VTFHIPSLL	9	Unmodified	_VTFHIPSLL_					0	0	0			REV__tr|A0A553SS44|A0A553SS44_NIACIYafYfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02445PE=4SV=1	REV__tr|A0A553SS44|A0A553SS44_NIACIYafYfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02445PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	513.80276	1025.59097	-0.90091	-0.00046289	0.95046	0.00048835	0.049548	2.5458E-05	513.8019577888881	100.56	0.64536	99.727	99.41	100.06	-0.83051	0.014008	0.0011599	NaN	63.306	24	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49569	+		62680	30802	51685	51735							0.0791952134532039
VTFHIPSLL	9	Unmodified	_VTFHIPSLL_					0	0	0			REV__tr|A0A553SS44|A0A553SS44_NIACIYafYfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02445PE=4SV=1	REV__tr|A0A553SS44|A0A553SS44_NIACIYafYfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_02445PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	513.80276	1025.59097	-0.4145	-0.00021297	-0.16333	-8.392E-05	-0.57784	-0.00029689	513.8019990297037	102.01	0.52074	99.806	99.522	100.04	-2.1994	0.092189	1.5358E-05	NaN	63.306	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61299	+		62681	30802	51685	51735							0.0791952134532039
VTFKGEGLY	9	Unmodified	_VTFKGEGLY_					0	0	0			REV__tr|A0A553SNE4|A0A553SNE4_NIACINADH:flavinoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_24250PE=4SV=1	REV__tr|A0A553SNE4|A0A553SNE4_NIACINADH:flavinoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_24250PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.27508544921875	2	507.26875	1012.52295	-1.0362	-0.00052562	-0.040607	-2.0599E-05	-1.0768	-0.00054622	507.26858267418885	90.189	1.6274	88.108	87.85	89.477	-2.0805					58	31	4	0	0	0	0.027441	1	5556	5556		40.778	0	1	202960	+		62682	30414	51686	51736	68786	68786					0.017186516946594566
VTFKSILFV	9	Unmodified	_VTFKSILFV_					0	0	0		ENSG00000166598|ENST00000299767|HSP90B1;HSP90B1|p.I687Vfs*9|1|0.07|ENSG00000166598|chr12:103946648-103946649|-/GTGCTCCAGGTACTTGGGACTC|frameshift_variant;ENST00000548462.5_1_12:104324233-104336580:+|nuORF;ENST00000415545.2_1_1:92108345-92109332:+|nuORF;nc|ENSG00000259706|Q58FF3|HSP90B2P;ENST00000550479.1_1_12:104332030-104335334:+|nuORF	ENSG00000166598|ENST00000299767|HSP90B1	ENSG00000166598|ENST00000299767|HSP90B1	MULTI-MSMS	OvCa99_classI_Rep5	1	527.3234252929688	2	527.320786	1052.62702	1.5217	0.00080243	-0.21872	-0.00011534	1.303	0.0006871	527.3204738295128	129.59	1.1741	129.59	129.17	130.34	0					38	24	2	0	0	0	0.37135	1	15025	15025		54.776	6.8168	1	304230			62683	6697	51687	51737	68787	68787					0.10280978522200712
VTFLQLPGL	9	Unmodified	_VTFLQLPGL_					0	0	0			REV__ENST00000534358.5_2_11:118393008-118393158:+|nuORF	REV__ENST00000534358.5_2_11:118393008-118393158:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	494.2969055175781	2	494.29731	986.580068	0.59231	0.00029278	-0.68142	-0.00033682	-0.089108	-4.4046E-05	494.29678378725345	123.89	1.2329	123.66	123.34	124.57	-0.23193					56	24	3	0	0	0	0.48324	1	12042	12042		44.117	0	1	136770	+		62684	27268	51688	51738	68788	68788					0.08624118971033568
VTFLQLPGL	9	Unmodified	_VTFLQLPGL_					0	0	0			REV__ENST00000534358.5_2_11:118393008-118393158:+|nuORF	REV__ENST00000534358.5_2_11:118393008-118393158:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.2982177734375	2	494.29731	986.580068	-1.4465	-0.00071498	1.2801	0.00063276	-0.16635	-8.2228E-05	494.2977438636246	125.06	1.7072	123.67	123.28	124.99	-1.3908					64	33	3	0	0	0	0.5811	1	11895	11895		34.173	0	1	176560	+		62685	27268	51688	51738	68789	68789					0.08624118971033568
VTFLYQIL	8	Unmodified	_VTFLYQIL_					0	0	0		ENST00000468626.2_1_1:235993486-235996891:-|nuORF	ENST00000468626.2_1_1:235993486-235996891:-|nuORF	ENST00000468626.2_1_1:235993486-235996891:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.7904968261719	2	498.791861	995.569169	-0.69611	-0.00034721	-3.8847	-0.0019376	-4.5808	-0.0022849	498.7898766980179	115.24	3.0674	115.12	114.7	117.77	-0.11777					207	61	7	0	0	0	0.59148	1	11061	11061		65.803	0	1	2910400			62686	12332	51689	51739	68790	68790					0.07120716596762122
VTFPLMYR	8	Unmodified	_VTFPLMYR_					0	0	0		tr|A0A7D6VZ45|A0A7D6VZ45_9CLOTMolybdenumtransportsystempermeaseOS=ClostridiumintestinaleOX=36845GN=modBPE=3SV=1	tr|A0A7D6VZ45|A0A7D6VZ45_9CLOTMolybdenumtransportsystempermeaseOS=ClostridiumintestinaleOX=36845GN=modBPE=3SV=1	tr|A0A7D6VZ45|A0A7D6VZ45_9CLOTMolybdenumtransportsystempermeaseOS=ClostridiumintestinaleOX=36845GN=modBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.301025390625	2	513.775688	1025.53682	-1.4602	-0.00075022	1.7346	0.00089119	0.27439	0.00014098	513.7761295491298	50.545	0.97222	47.38	47.109	48.081	-3.1646					32	18	3	0	0	0	0.028476	1	2933	2933		24.203	0	1	54303			62687	35348	51690	51740	68791	68791					0.025076059220964453
VTFQGPQAAPI	11	Unmodified	_VTFQGPQAAPI_					0	0	0			REV__ENSG00000184925|ENST00000371633|LCN12	REV__ENSG00000184925|ENST00000371633|LCN12	MULTI-MSMS	OvCa9_classI_Rep2	2	564.813720703125	2	564.806031	1127.59751	-0.6708	-0.00037887	1.0893	0.00061522	0.41845	0.00023634	564.8065459691159	99.395	2.9276	98.564	97.919	100.85	-0.83052					122	58	4	0	0	0	0.21979	1	9107	9107		77.318	5.4401	1	405350	+		62688	22459	51691	51741	68792	68792					0.038814145060541705
VTFVQKDHSM	10	Unmodified	_VTFVQKDHSM_					0	0	0			REV__ENSG00000149231|ENST00000646818|CCDC82	REV__ENSG00000149231|ENST00000646818|CCDC82	MULTI-SECPEP	OvCa9_classI_Rep3	3	595.8527221679688	2	596.294973	1190.57539	0.028087	1.6748E-05	-4.0682	-0.0024258	-4.0401	-0.0024091	596.2951700740099	87.485	1.0298	85.308	84.985	86.015	-2.1768					40	19	3	0	0	0	0.026802	1	5324	5324		14.137	0	1	27097	+		62689	20149	51692	51742	68793	68793					-0.012271332340560548
VTGDPGAVLW	10	Unmodified	_VTGDPGAVLW_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	OvCa9_classI_Rep2	2	507.76593017578125	2	507.766374	1013.5182	0.43978	0.0002233	-0.32354	-0.00016428	0.11624	5.9022E-05	507.76605298589374	131.19	1.6749	130.96	130.26	131.93	-0.22696					79	33	3	0	0	0	0.71192	1	12918	12918		29.15	1.2673	1	124560			62690	8118	51693	51743	68794	68794					0.01197767551900597
VTGEKQGRLGK	11	Unmodified	_VTGEKQGRLGK_					0	0	0		ENST00000332065.9_1_17:74077409-74078102:-|nuORF	ENST00000332065.9_1_17:74077409-74078102:-|nuORF	ENST00000332065.9_1_17:74077409-74078102:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	587.8141479492188	2	586.840936	1171.66732	-0.45472	-0.00026685	-3.8104	-0.0022361	-4.2651	-0.0025029	587.340068107175	97.842	0.83162	96.884	96.711	97.542	-0.95857					26	16	2	0	0	0	0.025656	1	8935	8935		26.063	0	1	22377			62691	10452	51694	51744	68795	68795					0.08835293174638537
VTGELCVTLKA	11	Unmodified	_VTGELCVTLKA_					0	0	0			REV__ENST00000367846.8_1_1:167887440-167887497:-|nuORF	REV__ENST00000367846.8_1_1:167887440-167887497:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3158569335938	2	567.315374	1132.6162	2.0704	0.0011746	-2.1966	-0.0012462	-0.12617	-7.1576E-05	567.3139739099872	57.536	1.95	54.41	53.788	55.738	-3.1264					89	52	3	0	0	0	0.69808	1	1684	1684		30.318	5.7985	1	66904	+		62692	24908	51695	51745	68796	68796					0.055192080855931636
VTGFLLALF	9	Unmodified	_VTGFLLALF_					0	0	0		ENSG00000145283|ENST00000273905|SLC10A6	ENSG00000145283|ENST00000273905|SLC10A6	ENSG00000145283|ENST00000273905|SLC10A6	MULTI-MSMS	OvCa99_classI_Rep5	1	490.7953796386719	2	490.794404	979.574254	1.5229	0.00074744	0.15935	7.821E-05	1.6823	0.00082565	490.79435925947024	125.41	0.61575	125.41	125.14	125.76	0					32	15	3	0	0	0	0.42057	1	14487	14487		50.025	0.81375	1	393760			62693	5214	51696	51746	68797	68797					0.08365020459382322
VTGHIESVI	9	Unmodified	_VTGHIESVI_					0	0	0			REV__tr|A0A7D6VP67|A0A7D6VP67_9CLOTDNA-directedRNApolymerasesubunitbeta'OS=ClostridiumintestinaleOX=36845GN=rpoCPE=3SV=1	REV__tr|A0A7D6VP67|A0A7D6VP67_9CLOTDNA-directedRNApolymerasesubunitbeta'OS=ClostridiumintestinaleOX=36845GN=rpoCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	477.7675476074219	2	477.766374	953.518196	0.045401	2.1691E-05	-0.061548	-2.9406E-05	-0.016147	-7.7146E-06	477.7661495550662	88.014	1.3475	85.883	85.597	86.944	-2.1309					74	26	4	0	0	0	0.11171	1	5328	5328		94.006	0	1	814090	+		62694	31232	51697	51747	68798	68798					0.0395776755190127
VTGHIESVI	9	Unmodified	_VTGHIESVI_					0	0	0			REV__tr|A0A7D6VP67|A0A7D6VP67_9CLOTDNA-directedRNApolymerasesubunitbeta'OS=ClostridiumintestinaleOX=36845GN=rpoCPE=3SV=1	REV__tr|A0A7D6VP67|A0A7D6VP67_9CLOTDNA-directedRNApolymerasesubunitbeta'OS=ClostridiumintestinaleOX=36845GN=rpoCPE=3SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	477.766374	953.518196	2.5132	0.0012007	0.17733	8.472E-05	2.6905	0.0012854	477.7663198684205	86.157	0.47777	86.157	85.954	86.431	0	0.073045	0.00060161	NaN	94.006	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	812620	+		62695	31232	51697	51747							0.0395776755190127
VTGHIESVI	9	Unmodified	_VTGHIESVI_					0	0	0			REV__tr|A0A7D6VP67|A0A7D6VP67_9CLOTDNA-directedRNApolymerasesubunitbeta'OS=ClostridiumintestinaleOX=36845GN=rpoCPE=3SV=1	REV__tr|A0A7D6VP67|A0A7D6VP67_9CLOTDNA-directedRNApolymerasesubunitbeta'OS=ClostridiumintestinaleOX=36845GN=rpoCPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	477.766374	953.518196	1.261	0.00060247	-1.563	-0.00074674	-0.30198	-0.00014428	477.7654501549179	87.565	1.8741	86.134	85.491	87.365	-1.4311	0.050215	-0.0010613	NaN	94.006	94	37	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	301790	+		62696	31232	51697	51747							0.0395776755190127
VTGILTILII	10	Unmodified	_VTGILTILII_					0	0	0		ENSG00000176681|ENST00000320254|LRRC37A;ENST00000572638.1_1_17:44625595-44632942:+|nuORF;ENSG00000176809|ENST00000584306|LRRC37A3;ENSG00000238083|ENST00000576629|LRRC37A2	ENSG00000176681|ENST00000320254|LRRC37A	ENSG00000176681|ENST00000320254|LRRC37A	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.3333740234375	2	528.357368	1054.70018	-1.0744	-0.00056767	-1.9105	-0.0010095	-2.9849	-0.0015771	528.3562538001256	57.392	1.1467	54.6	54.328	55.475	-2.792					52	22	3	0	0	0	0.026688	1	4097	4097		49.442	7.0454	1	109690			62697	7621	51698	51748	68799	68799					0.1750210724480894
VTGKPKPI	8	Unmodified	_VTGKPKPI_					0	0	0		nc|ENSG00000139915|Q7Z553-2|MDGA2;nc|ENSG00000139915|Q7Z553|MDGA2;ENSG00000139915|ENST00000399232|MDGA2;ENST00000557238.5_1_14:47341050-47530490:-|nuORF	nc|ENSG00000139915|Q7Z553-2|MDGA2	nc|ENSG00000139915|Q7Z553-2|MDGA2	MULTI-MSMS	OvCa9_classI_Rep3	3	420.27130126953125	2	420.271096	838.527639	1.933	0.0008124	-1.9883	-0.00083562	-0.055254	-2.3222E-05	420.27008841995223	120.72	1.123	119.69	119.41	120.54	-1.0271					49	21	3	0	0	0	0.66057	1	9230	9230		51.335	1.3109	1	114340			62698	4810	51699	51749	68800	68800					0.1019158062807719
VTGLHKVTV	9	Unmodified	_VTGLHKVTV_					0	0	0		FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant;FLNB|p.S2513Rfs*5|1|0.04|ENSG00000136068|chr3:58169710-58169711|-/GATTC|frameshift_variant;nc|ENSG00000136068|O75369-6|FLNB;nc|ENSG00000136068|O75369-3|FLNB;nc|ENSG00000136068|O75369-2|FLNB;nc|ENSG00000136068|O75369-9|FLNB;ENSG00000136068|ENST00000295956|FLNB;nc|ENSG00000136068|O75369-8|FLNB;nc|ENSG00000136068|O75369-5|FLNB;nc|ENSG00000136068|O75369-4|FLNB;FLNB|p.T1593Ifs*40|1|0.08|ENSG00000136068|chr3:58136084-58136085|-/TCTATCAAGTC|frameshift_variant;nc|ENSG00000136068|O75369-7|FLNB;FLNB|p.L1100Ffs*93|1|0.04|ENSG00000136068|chr3:58123263-58123263|C/-|frameshift_variant	FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant	FLNB|p.H2355Tfs*98|1|0.04|ENSG00000136068|chr3:58163193-58163194|-/GA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	477.2925109863281	2	477.292559	952.570566	-0.031999	-1.5273E-05	-0.54084	-0.00025814	-0.57284	-0.00027341	477.2922789197233	44.906	0.49648	44.906	44.662	45.159	0					22	10	3	0	0	0	0.14998	1	3068	3068		84.916	10.66	1	659210			62699	4455	51700	51750	68801	68801					0.09238350685507157
VTGLVRTFLV	10	Unmodified	_VTGLVRTFLV_					0	0	0			REV__ENST00000451122.5_1_7:116165410-116165638:+|nuORF	REV__ENST00000451122.5_1_7:116165410-116165638:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.7701416015625	2	552.842416	1103.67028	2.5258	0.0013964	-1.6503	-0.00091235	0.87551	0.00048402	552.8419863610416	75.461	0.15427	75.461	75.369	75.523	0					6	3	2	0	0	0	0.027174	1	7504	7504		20.947	0	1	328040	+		62700	25966	51701	51751	68802	68802					0.12259168299442535
VTGNQKGVAL	10	Unmodified	_VTGNQKGVAL_					0	0	0			REV__NUP214|p.A1512Sfs*24|1|0.04|ENSG00000126883|chr9:131198026-131198027|-/T|frameshift_variant	REV__NUP214|p.A1512Sfs*24|1|0.04|ENSG00000126883|chr9:131198026-131198027|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	493.7862548828125	2	493.785099	985.555644	1.1397	0.00056278	2.6761	0.0013214	3.8158	0.0018842	493.786264516808	122.62	1.6631	121.59	121.32	122.98	-1.0286					75	31	3	0	0	0	0.37436	1	9440	9440		71.877	3.0906	1	255040	+		62701	18801	51702	51752	68803	68803					0.06228858817530636
VTGPAGDNPL	10	Unmodified	_VTGPAGDNPL_					0	0	0		chr7:23260138-23266517|90|13.19|0.48|4.78|+|2|GPNMB,GPNMB|1	chr7:23260138-23266517|90|13.19|0.48|4.78|+|2|GPNMB,GPNMB|1	chr7:23260138-23266517|90|13.19|0.48|4.78|+|2|GPNMB,GPNMB|1	MULTI-MSMS	OvCa99_classI_Rep5	1	470.7467041015625	2	470.740357	939.46616	-0.11275	-5.3076E-05	0.41007	0.00019304	0.29732	0.00013996	470.74040327643075	64.484	0.54031	64.484	64.253	64.793	0					24	12	3	0	0	0	0.39172	1	5875	5875		69.628	0	1	1233200			62702	527	51703	51753	68804	68804					-0.005993958618546458
VTGPKKTYI	9	Unmodified	_VTGPKKTYI_					0	0	0		ENSG00000145012|ENST00000617246|LPP	ENSG00000145012|ENST00000617246|LPP	ENSG00000145012|ENST00000617246|LPP	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.21380615234375	2	503.800217	1005.58588	2.0124	0.0010139	-0.21936	-0.00011051	1.7931	0.00090334	503.7996784531054	95.459	0.96408	95.459	95.033	95.997	0					27	22	2	0	0	0	0.027462	1	10386	10386		25.574	3.8717	1	413010			62703	5196	51704	51754	68805	68805					0.08331217482702868
VTGRKDSL	8	Unmodified	_VTGRKDSL_					0	0	0		nc|ENSG00000138688|Q2LD37-4|BLTP1;nc|ENSG00000138688|Q2LD37|BLTP1;ENSG00000138688|ENST00000679879|BLTP1;nc|ENSG00000138688|Q2LD37-7|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	nc|ENSG00000138688|Q2LD37-4|BLTP1	MULTI-MSMS	OvCa9_classI_Rep2	2	438.25091552734375	2	438.250892	874.48723	0.8337	0.00036537	-0.71804	-0.00031468	0.11567	5.069E-05	438.2504606921411	40.369	1.2824	37.66	37.402	38.684	-2.7097					65	25	5	0	0	0	0.50747	1	2033	2033		76.774	5.4784	1	308830			62704	4713	51705	51755	68806	68806					0.04496614237655194
VTHFNSLEV	9	Unmodified	_VTHFNSLEV_					0	0	0		nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT;nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF;ENST00000544872.1_1_12:120135779-120135884:-|nuORF	nc|ENSG00000122966|O14578|CIT	nc|ENSG00000122966|O14578|CIT	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.3015747070312	2	523.269281	1044.52401	0.81525	0.0004266	0.42336	0.00022153	1.2386	0.00064812	523.2690812362214	84.913	0.82616	82.266	82.167	82.993	-2.6463					17	16	2	0	0	0	0.027462	1	7174	7174		31.53	1.0262	1	35032			62705	3566	51706	51756	68807	68807					0.0035286606357658457
VTHFNSLEV	9	Unmodified	_VTHFNSLEV_					0	0	0		nc|ENSG00000122966|O14578|CIT;ENSG00000122966|ENST00000392521|CIT;nc|ENSG00000122966|O14578-3|CIT;ENST00000545913.5_1_12:120126039-120222037:-|nuORF;ENST00000537607.5_1_12:120126039-120222037:-|nuORF;ENST00000544872.1_1_12:120135779-120135884:-|nuORF	nc|ENSG00000122966|O14578|CIT	nc|ENSG00000122966|O14578|CIT	MULTI-MATCH	OvCa9_classI_Rep3	3		2	523.269281	1044.52401	-1.2698	-0.00066445	2.0809	0.0010889	0.81107	0.00042441	523.2691586203589	84.452	0.92241	82.191	81.974	82.896	-2.261	-0.037806	0.00076174	NaN	39.253	23	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22072			62706	3566	51706	51756							0.0035286606357658457
VTHIFTSDGL	10	Unmodified	_VTHIFTSDGL_					0	0	0		nc|ENSG00000017260|P98194-3|ATP2C1;nc|ENSG00000017260|P98194-5|ATP2C1;nc|ENSG00000017260|P98194-8|ATP2C1;nc|ENSG00000017260|P98194-9|ATP2C1;nc|ENSG00000017260|P98194-6|ATP2C1;nc|ENSG00000017260|P98194-7|ATP2C1;nc|ENSG00000017260|P98194-4|ATP2C1;ENSG00000017260|ENST00000510168|ATP2C1;nc|ENSG00000017260|P98194-2|ATP2C1	nc|ENSG00000017260|P98194-3|ATP2C1	nc|ENSG00000017260|P98194-3|ATP2C1	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.3055419921875	2	545.282389	1088.55022	1.2272	0.00066917	-0.88378	-0.00048191	0.34342	0.00018726	545.2815411507046	109.5	0.61744	109.5	108.93	109.55	0					15	13	2	0	0	0	0.026665	1	12394	12394		42.396	0	1	145770			62707	14865	51707	51757	68808	68808					0.009491352350551097
VTHNVPIYEG	10	Unmodified	_VTHNVPIYEG_					0	0	0		ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;nc|ENSG00000163017|P63267-2|ACTG2;ENST00000480297.5_1_10:90700968-90708687:-|nuORF	ENSG00000159251|ENST00000290378|ACTC1	ENSG00000159251|ENST00000290378|ACTC1	MULTI-MSMS	OvCa9_classI_Rep3	3	565.2916259765625	2	564.787838	1127.56112	2.0131	0.001137	0.71707	0.00040499	2.7302	0.001542	564.7881890961606	52.015	1.7437	48.761	47.755	49.499	-3.2542					100	67	2	0	0	0	0.82648	1	1239	1239		15.642	1.5047	1	21266			62708	5081	51708	51758	68809	68809					0.0024453760931919533
VTIARAIEL	9	Unmodified	_VTIARAIEL_					0	0	0		nc|ENSG00000162819|Q5VW32-2|BROX;ENSG00000162819|ENST00000340934|BROX	nc|ENSG00000162819|Q5VW32-2|BROX	nc|ENSG00000162819|Q5VW32-2|BROX	MULTI-MSMS	OvCa9_classI_Rep2	2	493.30438232421875	2	493.305667	984.596781	-0.18226	-8.9912E-05	0.17995	8.8768E-05	-0.0023189	-1.1439E-06	493.3057495887522	99.024	1.7379	98.131	97.907	99.645	-0.89305					61	34	3	0	0	0	0.26076	1	9025	9025		67.494	8.7117	1	235990			62709	6238	51709	51759	68810	68810					0.10386619856978996
VTIARAIEL	9	Unmodified	_VTIARAIEL_					0	0	0		nc|ENSG00000162819|Q5VW32-2|BROX;ENSG00000162819|ENST00000340934|BROX	nc|ENSG00000162819|Q5VW32-2|BROX	nc|ENSG00000162819|Q5VW32-2|BROX	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.3055419921875	2	493.305667	984.596781	-0.91543	-0.00045158	1.073	0.00052934	0.15761	7.7752E-05	493.30617897670356	100.5	0.95731	98.232	97.926	98.883	-2.2665					46	18	4	0	0	0	0.24899	1	8992	8992		68.846	12.412	1	306130			62710	6238	51709	51759	68811	68811					0.10386619856978996
VTIARSPNL	9	Unmodified	_VTIARSPNL_					0	0	0		ENSG00000182749.6,PAQR7,chr1,-,I1.1,25871254,25875487|66|9.8|1|intron	ENSG00000182749.6,PAQR7,chr1,-,I1.1,25871254,25875487|66|9.8|1|intron	ENSG00000182749.6,PAQR7,chr1,-,I1.1,25871254,25875487|66|9.8|1|intron	MULTI-MSMS	OvCa99_classI_Rep5	1	485.78826904296875	2	485.787641	969.56073	2.208	0.0010726	-0.037157	-1.805E-05	2.1708	0.0010546	485.7874358832171	82.581	0.7705	82.581	82.222	82.992	0					53	17	5	0	0	0	0.075543	1	8550	8550		104.06	18.697	1	3464100			62711	8021	51710	51760	68812	68812					0.07473162680128098
VTIDKLIQ	8	Unmodified	_VTIDKLIQ_					0	0	0			REV__ENST00000596710.1_1_19:21934351-21934702:+|nuORF	REV__ENST00000596710.1_1_19:21934351-21934702:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	465.2865905761719	2	465.286943	928.559333	0.40865	0.00019014	-0.89022	-0.00041421	-0.48157	-0.00022407	465.2865075151942	125.02	3.4561	124.79	124.42	127.87	-0.2359					183	69	5	0	0	0	0.65267	1	12275	12275		52.937	0	1	4060300	+		62712	17873	51711	51761	68813	68813					0.09219528591370363
VTIGGLGGAAL	11	Unmodified	_VTIGGLGGAAL_					0	0	0		ENSG00000213949|ENST00000282588|ITGA1;ITGA1|p.L794Sfs*7|1|0.04|ENSG00000213949|chr5:52922862-52922863|-/T|frameshift_variant;ENST00000504669.5_1_5:52201585-52248278:+|nuORF	ENSG00000213949|ENST00000282588|ITGA1	ENSG00000213949|ENST00000282588|ITGA1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.2970275878906	2	464.776742	927.538931	-0.71736	-0.00033341	0.2886	0.00013414	-0.42876	-0.00019928	464.7772531793189	104.25	0.68231	102.13	101.64	102.32	-2.1192					16	12	2	0	0	0	0.025298	1	9412	9412		31.53	0	1	11662			62713	9157	51712	51762	68814	68814					0.07226357931563143
VTIGIDSLK	9	Unmodified	_VTIGIDSLK_					0	0	0			REV__ENSG00000168152|ENST00000302236|THAP9	REV__ENSG00000168152|ENST00000302236|THAP9	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.283447265625	2	473.2844	944.554247	-1.6606	-0.00078594	1.53	0.00072412	-0.1306	-6.1812E-05	473.2850355269514	126.32	0.98356	124.9	124.58	125.56	-1.4143					31	19	2	0	0	0	0.19758	1	12025	12025		76.774	7.9873	1	75394	+		62714	21352	51713	51763	68815	68815					0.07975224728761532
VTIGLIVAPF	10	Unmodified	_VTIGLIVAPF_					0	0	0		GPR12|p.S123P|1|0.05|ENSG00000132975|chr13:26759461-26759461|A/G|missense_variant	GPR12|p.S123P|1|0.05|ENSG00000132975|chr13:26759461-26759461|A/G|missense_variant	GPR12|p.S123P|1|0.05|ENSG00000132975|chr13:26759461-26759461|A/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.294189453125	2	515.320786	1028.62702	-0.64682	-0.00033332	-4.2569	-0.0021937	-4.9037	-0.002527	515.318314852108	61.752	0.79311	61.752	61.416	62.209	0					48	18	4	0	0	0	0.026523	1	5482	5482		68.787	10.005	1	1791600			62715	14349	51714	51764	68816	68816					0.11384978522164602
VTIHYDLHN	9	Unmodified	_VTIHYDLHN_					0	0	0			REV__ENST00000402768.1_1_6:139935577-139935790:-|nuORF	REV__ENST00000402768.1_1_6:139935577-139935790:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	555.3267211914062	2	556.28018	1110.54581	1.835	0.0010208	-1.9578	-0.0010891	-0.12281	-6.8319E-05	556.2788952018141	86.05	1.2373	83.404	82.945	84.182	-2.6463					62	24	5	0	0	0	0.027462	1	7220	7220		30.504	4.9296	1	259960	+		62716	25420	51715	51765	68817	68817					-0.00504329187856456
VTIIDGAKVN	10	Unmodified	_VTIIDGAKVN_					0	0	0			REV__ENSG00000167971|ENST00000343516|CASKIN1	REV__ENSG00000167971|ENST00000343516|CASKIN1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	514.7728881835938	2	515.300581	1028.58661	-0.93432	-0.00048146	0.14627	7.5371E-05	-0.78805	-0.00040608	515.3005734665575	70.326	0.91915	66.845	66.589	67.508	-3.4812					29	18	2	0	0	0	0.02658	1	5332	5332		37.812	4.9991	1	131150	+		62717	21324	51716	51766	68818	68818					0.07346012131779389
VTIIDGAKVN	10	Unmodified	_VTIIDGAKVN_					0	0	0			REV__ENSG00000167971|ENST00000343516|CASKIN1	REV__ENSG00000167971|ENST00000343516|CASKIN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.300581	1028.58661	-0.35783	-0.00018439	-0.71466	-0.00036827	-1.0725	-0.00055266	515.3000257487781	69.447	0.69846	66.827	66.465	67.164	-2.6203	-0.0093759	-0.00067943	NaN	37.812	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35772	+		62718	21324	51716	51766							0.07346012131779389
VTIISACAP	9	Unmodified	_VTIISACAP_					0	0	0		ENSG00000115423|ENST00000389394|DNAH6;nc|ENSG00000115423|Q9C0G6-4|DNAH6;ENST00000602588.1_2_2:84885442-84924911:+|nuORF	ENSG00000115423|ENST00000389394|DNAH6	ENSG00000115423|ENST00000389394|DNAH6	MULTI-SECPEP	OvCa99_classI_Rep5	1	437.7624816894531	2	437.738771	873.462989	3.0468	0.0013337	1.2768	0.00055888	4.3235	0.0018926	437.73769467628995	110.71	0.26409	110.71	110.58	110.85	0					6	5	2	0	0	0	0.027456	1	12568	12568		38.806	3.6054	1	36559			62719	3097	51717	51767	68819	68819					0.021196377597675564
VTIIVHGTQ	9	Unmodified	_VTIIVHGTQ_					0	0	0			REV__ENSG00000253304|ENST00000521452|TMEM200B	REV__ENSG00000253304|ENST00000521452|TMEM200B	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.2681579589844	2	484.282192	966.549831	-0.71453	-0.00034604	1.3108	0.00063479	0.59625	0.00028875	484.28322500412656	39.779	0.71058	39.779	39.63	40.34	0					24	15	2	0	0	0	0.027462	1	2372	2372		25.574	0	1	228690	+		62720	23502	51718	51768	68820	68820					0.06521760305861335
VTIKRSKSK	9	Unmodified	_VTIKRSKSK_					0	0	0		ENST00000484916.1_1_14:19468684-19468777:+|nuORF	ENST00000484916.1_1_14:19468684-19468777:+|nuORF	ENST00000484916.1_1_14:19468684-19468777:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	523.2805786132812	2	523.837665	1045.66078	-0.6802	-0.00035631	0.5776	0.00030257	-0.1026	-5.3745E-05	523.8383481453677	76.435	0.27943	73.496	73.365	73.645	-2.9389					7	5	2	0	0	0	0.027462	1	6067	6067		16.473	0	1	10618			62721	12606	51719	51769	68821	68821					0.13977400013959596
VTIKWVCN	8	Unmodified	_VTIKWVCN_					0	0	0			REV__nc|ENSG00000164796|Q7Z407-5|CSMD3	REV__nc|ENSG00000164796|Q7Z407-5|CSMD3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	482.7611999511719	2	481.760038	961.505523	-0.29667	-0.00014292	3.2315	0.0015568	2.9348	0.0014139	481.76141105968316	58.582	1.3475	55.19	54.802	56.149	-3.392					58	26	3	0	0	0	0.028476	1	3825	3825		30.504	6.9809	1	578410	+		62722	21020	51720	51770	68822	68822					0.023230328880117668
VTILRTPAI	9	Unmodified	_VTILRTPAI_					0	0	0		ENST00000335281.8_1_14:52434561-52434765:+|nuORF	ENST00000335281.8_1_14:52434561-52434765:+|nuORF	ENST00000335281.8_1_14:52434561-52434765:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	492.3156433105469	2	492.316035	982.617516	0.37522	0.00018473	-0.87519	-0.00043087	-0.49997	-0.00024614	492.31549491018296	97.941	2.2247	97.048	96.776	99.001	-0.89305					86	44	4	0	0	0	0.28934	3	8891	8875;8891;8897		64.207	5.4253	1	574150			62723	10494	51721	51771	68823;68824;68825	68824					0.12551210236631505
VTILRTPAI	9	Unmodified	_VTILRTPAI_					0	0	0		ENST00000335281.8_1_14:52434561-52434765:+|nuORF	ENST00000335281.8_1_14:52434561-52434765:+|nuORF	ENST00000335281.8_1_14:52434561-52434765:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	492.3177490234375	2	492.316035	982.617516	-0.45847	-0.00022571	0.18173	8.9468E-05	-0.27674	-0.00013624	492.31603122769184	98.824	1.4451	97.139	96.852	98.297	-1.685					69	27	4	0	0	0	0.2422	1	6637	6637		69.628	3.1983	1	818000			62724	10494	51721	51771	68826	68826					0.12551210236631505
VTILRTPAI	9	Unmodified	_VTILRTPAI_					0	0	0		ENST00000335281.8_1_14:52434561-52434765:+|nuORF	ENST00000335281.8_1_14:52434561-52434765:+|nuORF	ENST00000335281.8_1_14:52434561-52434765:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.3167724609375	2	492.316035	982.617516	-0.36395	-0.00017918	0.020264	9.9762E-06	-0.34368	-0.0001692	492.3159243507644	99.407	1.3843	97.082	96.795	98.179	-2.3253					64	26	3	0	0	0	0.12515	1	8865	8865		90.37	2.6155	1	745510			62725	10494	51721	51771	68827	68827					0.12551210236631505
VTINVRGTFPL	11	Unmodified	_VTINVRGTFPL_					0	0	0			REV__ENSG00000172901|ENST00000357872|LVRN	REV__ENSG00000172901|ENST00000357872|LVRN	MULTI-SECPEP	OvCa9_classI_Rep2	2	406.7531433105469	3	406.239796	1215.69756	0.78352	0.0003183	0.46658	0.00018954	1.2501	0.00050784	406.23970717742174	74.356	0.26226	72.385	72.272	72.534	-1.9711					8	4	2	0	0	0	0.026033	1	6078	6078		35.178	25.532	1	11459	+		62726	21735	51722	51772	68828	68828					0.09833651839858248
VTIPPKSSL	9	Unmodified	_VTIPPKSSL_					0	0	0		ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	OvCa99_classI_Rep5	1	471.2883605957031	2	471.286943	940.559333	0.39577	0.00018652	0.059333	2.7963E-05	0.45511	0.00021449	471.2868394335814	72.34	7.0488	72.34	69.552	76.6	0					308	176	2	0	0	0	0.1149	1	7037	7037		93.143	8.2277	1	3030900			62727	3725	51723	51773	68829	68829					0.0866752859137705
VTIQLAQKV	9	Unmodified	_VTIQLAQKV_					0	0	0		ENSG00000167098|ENST00000356173|SUN5	ENSG00000167098|ENST00000356173|SUN5	ENSG00000167098|ENST00000356173|SUN5	MULTI-MSMS	OvCa9_classI_Rep3	3	500.3131103515625	2	500.313492	998.612431	0.37155	0.00018589	-0.7555	-0.00037799	-0.38395	-0.00019209	500.31302313941114	128.99	2.6573	127.9	127.57	130.22	-1.0933					135	53	5	0	0	0	0.44568	1	10290	10290		47.657	6.8792	1	747300			62728	6753	51724	51774	68830	68830					0.11306906374045411
VTITDLQGL	9	Unmodified	_VTITDLQGL_					0	0	0		ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	ENSG00000257743|ENST00000477922|MGAM2	MULTI-MSMS	OvCa9_classI_Rep3	3	480.2744140625	2	480.274032	958.533512	-0.25819	-0.000124	0.092774	4.4557E-05	-0.16541	-7.9444E-05	480.2740025164239	94.935	1.8458	93.039	92.358	94.204	-1.8956					93	36	4	0	0	0	0.070405	1	6176	6176		107.01	5.7549	1	1018700			62729	9475	51725	51775	68831	68831					0.05258634349092972
VTITGTNLNAG	11	Unmodified	_VTITGTNLNAG_					0	0	0		ENSG00000221866|ENST00000321063|PLXNA4	ENSG00000221866|ENST00000321063|PLXNA4	ENSG00000221866|ENST00000321063|PLXNA4	MULTI-MSMS	OvCa99_classI_Rep5	1	530.7861938476562	2	530.785296	1059.55604	-0.073297	-3.8905E-05	-0.27967	-0.00014845	-0.35297	-0.00018735	530.7850969297409	69.149	1.5228	69.149	68.523	70.046	0					92	36	4	0	0	0	0.11855	1	6583	6583		93.143	12.689	1	10606000			62730	9231	51726	51776	68832	68832					0.02864233746709033
VTITGTNLNAG	11	Unmodified	_VTITGTNLNAG_					0	0	0		ENSG00000221866|ENST00000321063|PLXNA4	ENSG00000221866|ENST00000321063|PLXNA4	ENSG00000221866|ENST00000321063|PLXNA4	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	530.785296	1059.55604	-2.2214	-0.0011791	0.35322	0.00018748	-1.8682	-0.00099161	530.7850354147179	72.673	0.72761	69.277	68.96	69.688	-3.3961	0.063811	0.00058612	NaN	93.143	23	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57413			62731	9231	51726	51776							0.02864233746709033
VTITKQIN	8	Unmodified	_VTITKQIN_					0	0	0			REV__nc|ENSG00000091409|P23229-7|ITGA6	REV__nc|ENSG00000091409|P23229-7|ITGA6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	457.9253234863281	2	458.776742	915.538931	0.44884	0.00020592	-1.4186	-0.00065083	-0.96977	-0.00044491	458.77590192108244	68.352	0.98251	64.862	64.622	65.605	-3.4902					27	19	2	0	0	0	0.028476	1	5069	5069		17.365	5.8539	1	40528	+		62732	17248	51727	51777	68833	68833					0.07778357931556457
VTKEADISII	10	Unmodified	_VTKEADISII_					0	0	0			REV__L1PA8_dup7672|chr19:21549449-21550650:-|1.0893067253068611|0.363832208290546|1.58|386.0|10|1|sense	REV__L1PA8_dup7672|chr19:21549449-21550650:-|1.0893067253068611|0.363832208290546|1.58|386.0|10|1|sense	MSMS	OvCa99_classI_Rep5	1	544.8153686523438	2	544.813522	1087.61249	NaN	NaN	NaN	NaN	NaN	NaN	NaN	49.388	1	49.388	48.888	49.888	0								0	0	0	0.088001	1	3686	3686		98.629	0	1		+		62733	28577	51728	51778	68834	68834					0.07218861583373837
VTKEFFLL	8	Unmodified	_VTKEFFLL_					0	0	0		ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	ENSG00000138641|ENST00000402738|HERC3	MULTI-MSMS	OvCa9_classI_Rep3	3	498.79010009765625	2	498.791861	995.569169	-0.82368	-0.00041084	-3.8314	-0.0019111	-4.6551	-0.0023219	498.78992392916325	116.11	3.0188	115.07	114.6	117.62	-1.0414					179	60	5	0	0	0	0.65062	1	8734	8734		53.351	3.3269	1	2745900			62734	4702	51729	51779	68835	68835					0.07120716596762122
VTKGIIVDD	9	Unmodified	_VTKGIIVDD_					0	0	0			REV__ENSG00000047315|ENST00000314595|POLR2B	REV__ENSG00000047315|ENST00000314595|POLR2B	MULTI-SECPEP	OvCa9_classI_Rep3	3	479.8012390136719	2	480.274032	958.533512	-0.32652	-0.00015682	1.2431	0.00059703	0.91659	0.00044021	480.27468448868893	97.314	0.4554	95.555	95.362	95.818	-1.7595					14	8	2	0	0	0	0.027433	1	6422	6422		34.173	0	1	39320	+		62735	16653	51730	51780	68836	68836					0.052586343490816034
VTKIYNLDF	9	Unmodified	_VTKIYNLDF_					0	0	0			REV__tr|A0A7D6ZGN9|A0A7D6ZGN9_9CLOTCotSfamilysporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19650PE=4SV=1	REV__tr|A0A7D6ZGN9|A0A7D6ZGN9_9CLOTCotSfamilysporecoatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19650PE=4SV=1	MSMS	OvCa9_classI_Rep4_	4	556.8024291992188	2	556.802957	1111.59136	NaN	NaN	NaN	NaN	NaN	NaN	NaN	142.4	1	140.96	140.46	141.46	-1.4454								0	0	0	0.17936	1	13929	13929		35.618	0	1		+		62736	32004	51731	51781	68837	68837					0.04002896274505474
VTKLLITNN	9	Unmodified	_VTKLLITNN_					0	0	0			REV__tr|A0A7D6ZV68|A0A7D6ZV68_9CLOTBglGfamilytranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02720PE=4SV=1	REV__tr|A0A7D6ZV68|A0A7D6ZV68_9CLOTBglGfamilytranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02720PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.3117370605469	2	508.310949	1014.60735	1.1935	0.00060666	-1.1814	-0.00060052	0.012084	6.1426E-06	508.31022832895366	129.39	1.6322	127.93	127.6	129.23	-1.4565					60	32	3	0	0	0	0.37182	1	12391	12391		54.722	1.7857	1	70621	+		62737	32239	51732	51782	68838	68838					0.10062602511413843
VTKMRSVVV	9	Unmodified	_VTKMRSVVV_					0	0	0			REV__HFM1|p.F1400Lfs*25|1|0.44|ENSG00000162669|chr1:91262279-91262279|A/-|frameshift_variant	REV__HFM1|p.F1400Lfs*25|1|0.44|ENSG00000162669|chr1:91262279-91262279|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.8017272949219	2	509.807519	1017.60049	-0.686	-0.00034973	-3.109	-0.001585	-3.795	-0.0019347	509.80593270745146	75.551	1.3002	73.697	73.323	74.624	-1.854					84	24	6	0	0	0	0.027462	1	6295	6295		24.203	16.512	1	585010	+		62738	20763	51733	51783	68839	68839					0.09238966359214373
VTKNAIAETI	10	Unmodified	_VTKNAIAETI_					0	0	0		nc|ENSG00000005810|O75592-2|MYCBP2;ENSG00000005810|ENST00000544440|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	nc|ENSG00000005810|O75592-2|MYCBP2	MULTI-MSMS	OvCa9_classI_Rep3	3	530.3080444335938	2	530.305864	1058.59717	-0.14461	-7.6688E-05	3.4799	0.0018454	3.3353	0.0017687	530.3076035340549	118.34	1.4886	117.31	117.03	118.52	-1.0324					73	29	4	0	0	0	0.40664	1	8933	8933		67.494	0.53175	1	450800			62739	859	51734	51784	68840	68840					0.07021994786168761
VTKNGIVDAI	10	Unmodified	_VTKNGIVDAI_					0	0	0			REV__nc|ENSG00000117625|Q9P2K3|RCOR3	REV__nc|ENSG00000117625|Q9P2K3|RCOR3	MULTI-MSMS	OvCa9_classI_Rep2	2	515.2979125976562	2	515.300581	1028.58661	-0.71327	-0.00036755	1.3484	0.00069485	0.63517	0.0003273	515.3010385104841	103.22	1.4324	102.53	102.23	103.66	-0.68459					89	28	4	0	0	0	0.45822	1	9520	9520		60.118	8.7828	1	289490	+		62740	18362	51735	51785	68841	68841					0.07346012131756652
VTKNIVRRNDN	11	Unmodified	_VTKNIVRRNDN_					0	0	0		tr|A0A553ST37|A0A553ST37_NIACIDUF1565domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04340PE=3SV=1	tr|A0A553ST37|A0A553ST37_NIACIDUF1565domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04340PE=3SV=1	tr|A0A553ST37|A0A553ST37_NIACIDUF1565domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04340PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	442.7749938964844	3	443.584625	1327.73205	0.66707	0.0002959	1.845	0.00081842	2.5121	0.0011143	443.58515041100344	114.03	0.76598	112.97	112.74	113.5	-1.055					30	14	3	0	0	0	0.026068	1	8461	8461		21.78	0	1	23314			62741	34451	51736	51786	68842	68842					0.08128867980667565
VTKNIVRRNDN	11	Unmodified	_VTKNIVRRNDN_					0	0	0		tr|A0A553ST37|A0A553ST37_NIACIDUF1565domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04340PE=3SV=1	tr|A0A553ST37|A0A553ST37_NIACIDUF1565domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04340PE=3SV=1	tr|A0A553ST37|A0A553ST37_NIACIDUF1565domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_04340PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	443.584625	1327.73205	2.3509	0.0010428	-0.49548	-0.00021979	1.8554	0.00082302	443.58436032992506	112.88	0.83916	112.75	112.57	113.41	-0.12174	-0.11001	-0.0014848	NaN	27.644	25	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19473			62742	34451	51736	51786							0.08128867980667565
VTKQLTIAH	9	Unmodified	_VTKQLTIAH_					0	0	0			REV__ENSG00000175727|ENST00000319080|MLXIP;REV__nc|ENSG00000175727|Q9HAP2-4|MLXIP	REV__ENSG00000175727|ENST00000319080|MLXIP	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.7847595214844	2	505.803291	1009.59203	0.041246	2.0862E-05	-0.51416	-0.00026006	-0.47291	-0.0002392	505.80288428866527	31.148	0.33309	31.148	31.027	31.361	0					10	6	2	0	0	0	0.027456	1	1256	1256		30.504	0	1	81411	+		62743	21911;29017	51737	51787	68843	68843					0.08761735714210772
VTKRLGHS	8	Unmodified	_VTKRLGHS_					0	0	0			REV__HERVH-int_dup2924|chr7:120779458-120782483:-|3.6914275035513295|0.0201601709888603|7.52|415.0|51|3|sense	REV__HERVH-int_dup2924|chr7:120779458-120782483:-|3.6914275035513295|0.0201601709888603|7.52|415.0|51|3|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	449.2681884765625	2	449.266876	896.519199	0.18025	8.0982E-05	0.73266	0.00032916	0.91292	0.00041014	449.26705126503055	69.46	0.61534	69.46	69.268	69.883	0					29	14	3	0	0	0	0.62474	1	6608	6608		58.782	6.4828	1	1614400	+		62744	28225	51738	51788	68844	68844					0.06680026711478604
VTKRPGKRT	9	Unmodified	_VTKRPGKRT_					0	0	0			REV__tr|A0A553SH80|A0A553SH80_NIACISmallribosomalsubunitproteinuS13OS=NialliacirculansOX=1397GN=rpsMPE=3SV=1	REV__tr|A0A553SH80|A0A553SH80_NIACISmallribosomalsubunitproteinuS13OS=NialliacirculansOX=1397GN=rpsMPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.2955932617188	2	521.827632	1041.64071	-0.94897	-0.0004952	0.36512	0.00019053	-0.58385	-0.00030467	521.8279295767607	29.312	0.64817	29.312	29.087	29.735	0					28	12	4	0	0	0	0.027446	1	1012	1012		42.864	7.246	1	368820	+		62745	29783	51739	51789	68845	68845					0.12155649073997665
VTKTVEKITS	10	Unmodified	_VTKTVEKITS_					0	0	0		nc|ENSG00000104722|P07197-2|NEFM;ENSG00000104722|ENST00000221166|NEFM	nc|ENSG00000104722|P07197-2|NEFM	nc|ENSG00000104722|P07197-2|NEFM	MULTI-MSMS	OvCa99_classI_Rep5	1	553.3269653320312	2	553.326796	1104.63904	0.35274	0.00019518	3.0155	0.0016686	3.3683	0.0018637	553.3283407030782	163.74	0.31497	163.74	163.63	163.94	0					21	12	2	0	0	0	0.75313	1	19127	19127		24.519	4.5224	1	44656			62746	2387	51740	51790	68846	68846					0.09090550474707015
VTLALRLR	8	Unmodified	_VTLALRLR_					0	0	0			REV__TP53|p.V218Cfs*29|1|0.71|ENSG00000141510|chr17:7674879-7674879|C/-|frameshift_variant	REV__TP53|p.V218Cfs*29|1|0.71|ENSG00000141510|chr17:7674879-7674879|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	470.79736328125	2	471.316369	940.618185	0.72836	0.00034329	-1.3243	-0.00062417	-0.59595	-0.00028088	471.31561199064475	79.521	1.0603	77.181	76.902	77.962	-2.3399					29	20	2	0	0	0	0.028476	1	4305	4305		35.618	0	1	39192	+		62747	29519	51741	51791	68847	68847					0.14550049676347498
VTLEHPLFV	9	Unmodified	_VTLEHPLFV_					0	0	0		nc|ENSG00000119772|Q9Y6K1-2|DNMT3A;chr2:25249724-25252194|354|12.75|0.26|5.61|-|ENST00000380746|DNMT3A,DNMT3A;chr2:25248252-25249657|378|12.87|0.55|4.54|-|ENST00000380746|DNMT3A,DNMT3A;ENSG00000119772|ENST00000321117|DNMT3A	nc|ENSG00000119772|Q9Y6K1-2|DNMT3A	nc|ENSG00000119772|Q9Y6K1-2|DNMT3A	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.2811889648438	2	527.800217	1053.58588	-0.2477	-0.00013074	-0.41541	-0.00021925	-0.66311	-0.00034999	527.7999055076718	108.46	0.8904	108.24	107.93	108.82	-0.22498					38	17	3	0	0	0	0.027456	1	10195	10195		38.806	1.647	1	77644			62748	440	51742	51792	68848	68848					0.06123217482695509
VTLEKLISK	9	Unmodified	_VTLEKLISK_					0	0	0			REV__ENST00000483120.1_1_1:15684662-15690294:+|nuORF	REV__ENST00000483120.1_1_1:15684662-15690294:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.829833984375	2	515.828975	1029.6434	2.9454	0.0015193	-3.4073	-0.0017576	-0.46192	-0.00023827	515.8271563507058	134.24	2.5208	132.72	132.39	134.91	-1.5257					147	50	5	0	0	0	0.65371	1	13105	13105		25.574	0	1	1356000	+		62749	26518	51743	51793	68849	68849					0.1297605968827611
VTLFPAGLFE	10	Unmodified	_VTLFPAGLFE_					0	0	0			REV__STK3-NIPAL2|2|fusion	REV__STK3-NIPAL2|2|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	547.3001098632812	2	547.30005	1092.58555	0.33936	0.00018573	-4.1464	-0.0022693	-3.8071	-0.0020836	547.297579565995	113.81	1.1845	113.69	113.37	114.55	-0.11777					43	23	2	0	0	0	0.6104	1	10800	10800		40.778	2.9666	1	185430	+		62750	29461	51744	51794	68850	68850					0.04295797762847542
VTLFYVFA	8	Unmodified	_VTLFYVFA_					0	0	0			REV__nc|ENSG00000164078|Q04912-4|MST1R	REV__nc|ENSG00000164078|Q04912-4|MST1R	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.2773132324219	2	480.265479	958.516405	-0.65017	-0.00031225	2.9932	0.0014375	2.343	0.0011253	480.26670068563067	51.12	1.6616	47.947	47.671	49.332	-3.1734					69	32	3	0	0	0	0.028476	1	2954	2954		28.254	0	1	661500	+		62751	20937	51745	51795	68851	68851					0.03548758533941054
VTLGLANSDL	10	Unmodified	_VTLGLANSDL_					0	0	0			REV__ENSG00000142207|ENST00000382751|URB1	REV__ENSG00000142207|ENST00000382751|URB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	501.2860107421875	2	501.776939	1001.53933	2.3879	0.0011982	-3.0967	-0.0015538	-0.70874	-0.00035563	501.77700410908596	80.353	0.55373	80.353	80.148	80.702	0					17	12	2	0	0	0	0.026867	1	8219	8219		51.193	0	1	515420	+		62752	19776	51746	51796	68852	68852					0.038617328607642776
VTLGLANSDL	10	Unmodified	_VTLGLANSDL_					0	0	0			REV__ENSG00000142207|ENST00000382751|URB1	REV__ENSG00000142207|ENST00000382751|URB1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	501.776939	1001.53933	-1.321	-0.00066284	-2.5739	-0.0012915	-3.8949	-0.0019544	501.7777347643766	82.715	1.0838	80.418	80.138	81.222	-2.2963	0.032782	0.00025423	NaN	35.152	44	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57083	+		62753	19776	51746	51796							0.038617328607642776
VTLGRPLLL	9	Unmodified	_VTLGRPLLL_					0	0	0		ENST00000394524.7_1_4:114375561-114375618:-|nuORF	ENST00000394524.7_1_4:114375561-114375618:-|nuORF	ENST00000394524.7_1_4:114375561-114375618:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.29071044921875	2	491.326402	980.638252	0.9217	0.00045285	-1.3056	-0.00064149	-0.38394	-0.00018864	491.3256453389201	111.62	0.93573	111.48	111.08	112.01	-0.1396					31	18	2	0	0	0	0.027462	1	10549	10549		42.396	5.237	1	24307			62754	11268	51747	51797	68853	68853					0.1471580061631812
VTLHNKKALV	10	Unmodified	_VTLHNKKALV_					0	0	0		ENSG00000186190|ENST00000375494|BPIFB3	ENSG00000186190|ENST00000375494|BPIFB3	ENSG00000186190|ENST00000375494|BPIFB3	MULTI-SECPEP	OvCa9_classI_Rep3	3	561.3090209960938	2	561.853316	1121.69208	-0.3951	-0.00022199	0.0042509	2.3884E-06	-0.39085	-0.0002196	561.8533109749388	80.612	0.97729	78.289	78.03	79.007	-2.3226					54	18	4	0	0	0	0.026994	1	4401	4401		25.574	0	1	97639			62755	8322	51748	51798	68854	68854					0.13609973048028223
VTLHRLIL	8	Unmodified	_VTLHRLIL_					0	0	0			REV__VN1R2|p.P228Sfs*27|1|0.41|ENSG00000196131|chr19:53259051-53259052|-/T|frameshift_variant	REV__VN1R2|p.P228Sfs*27|1|0.41|ENSG00000196131|chr19:53259051-53259052|-/T|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	483.2930908203125	2	482.818744	963.622936	-1.2384	-0.00059791	-1.3021	-0.00062868	-2.5405	-0.0012266	482.81865502762923	95.369	0.20072	92.9	92.761	92.962	-2.4685					5	3	2	0	0	0	0.028476	1	8384	8384		26.796	0	1	7643.4	+		62756	22787	51749	51799	68855	68855					0.139669338191311
VTLHVAVTK	9	Unmodified	_VTLHVAVTK_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.2681579589844	2	484.300384	966.586216	-0.68837	-0.00033338	-0.25354	-0.00012279	-0.94191	-0.00045617	484.3001945749014	39.666	0.6903	39.666	39.463	40.154	0					20	15	2	0	0	0	0.027462	1	2372	2372		25.574	8.2091	1	151460	+		62757	28942;32737	51750	51800	68856	68856					0.10158637202573573
VTLILTRPA	9	Unmodified	_VTLILTRPA_					0	0	0			REV__sp|Q6SW92|UL40_HCMVMProteinUL40OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL40PE=3SV=1	REV__sp|Q6SW92|UL40_HCMVMProteinUL40OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL40PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.317138671875	2	492.316035	982.617516	-0.36395	-0.00017918	0.020264	9.9762E-06	-0.34368	-0.0001692	492.3159243507644	99.407	1.3843	97.082	96.795	98.179	-2.3253					64	26	3	0	0	0	0.22621	1	8854	8854		71.877	2.2498	1	745510	+		62758	29429	51751	51801	68857	68857					0.12551210236654242
VTLLEQLE	8	Unmodified	_VTLLEQLE_					0	0	0			REV__nc|ENSG00000073614|P29375-2|KDM5A	REV__nc|ENSG00000073614|P29375-2|KDM5A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	473.25	2	472.768583	943.522613	-0.18419	-8.7082E-05	4.2921	0.0020292	4.1079	0.0019421	472.7705629406367	41.651	0.57082	38.671	38.388	38.959	-2.9804					20	10	2	0	0	0	0.028476	1	1895	1895		53.351	7.3995	1	160500	+		62759	16938	51752	51802	68858	68858					0.048592319748081536
VTLNHAEEV	9	Unmodified	_VTLNHAEEV_					0	0	0			REV__nc|ENSG00000041982|P24821-4|TNC	REV__nc|ENSG00000041982|P24821-4|TNC	MULTI-MSMS	OvCa9_classI_Rep2	2	506.2615966796875	2	506.258914	1010.50327	-0.0082329	-4.168E-06	-0.72144	-0.00036523	-0.72967	-0.0003694	506.2584999623091	80.238	2.521	78.542	77.819	80.34	-1.6951					182	49	6	0	0	0	0.37135	1	6792	6792		54.776	1.8396	1	1626600	+		62760	16634	51753	51803	68859	68859					-0.0015572431609598425
VTLPLTGQI	9	Unmodified	_VTLPLTGQI_					0	0	0			REV__nc|ENSG00000119684|Q9UHC1-2|MLH3	REV__nc|ENSG00000119684|Q9UHC1-2|MLH3	MULTI-MSMS	OvCa99_classI_Rep5	1	471.2881774902344	2	471.286943	940.559333	0.39577	0.00018652	0.059333	2.7963E-05	0.45511	0.00021449	471.2868394335814	72.34	7.0488	72.34	69.552	76.6	0					308	176	2	0	0	0	0.3076	1	6888	6888		62.107	0	1	3030900	+		62761	18459	51754	51804	68860	68860					0.0866752859137705
VTLPQQGR	8	Unmodified	_VTLPQQGR_					0	0	0			REV__PRAMEF20|p.R232Sfs*10|1|0.05|ENSG00000204478|chr1:13418529-13418530|-/T|frameshift_variant	REV__PRAMEF20|p.R232Sfs*10|1|0.05|ENSG00000204478|chr1:13418529-13418530|-/T|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	449.735595703125	2	449.758884	897.503215	0.96888	0.00043576	-0.8669	-0.0003899	0.10198	4.5868E-05	449.7583790937017	45.603	1.2142	45.603	45.373	46.587	0					55	27	4	0	0	0	0.028476	1	3248	3248		30.504	0	1	4176100	+		62762	23158	51755	51805	68861	68861					0.05036320474573586
VTLQCAGNRR	10	Unmodified	_VTLQCAGNRR_					0	0	0		ENSG00000139531|ENST00000266971|SUOX	ENSG00000139531|ENST00000266971|SUOX	ENSG00000139531|ENST00000266971|SUOX	MULTI-SECPEP	OvCa9_classI_Rep3	3	559.2706298828125	2	559.298381	1116.58221	-0.52734	-0.00029494	-0.23084	-0.00012911	-0.75818	-0.00042405	559.2979208373266	78.825	0.59178	76.483	76.161	76.752	-2.3413					21	11	2	0	0	0	0.02706	1	4191	4191		30.318	7.7381	1	27789			62763	4780	51756	51806	68862	68862					0.02858224437204626
VTLRIGYSQ	9	Unmodified	_VTLRIGYSQ_					0	0	0		ENST00000451384.6_2_2:98292117-98319261:+|nuORF	ENST00000451384.6_2_2:98292117-98319261:+|nuORF	ENST00000451384.6_2_2:98292117-98319261:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.3212890625	2	518.792924	1035.57129	-0.46321	-0.00024031	-1.0163	-0.00052726	-1.4795	-0.00076757	518.792280610499	105.4	1.926	103.38	103	104.93	-2.0161					106	35	4	0	0	0	0.027462	1	9747	9747		18.262	8.5564	1	1943200			62764	12047	51757	51807	68863	68863					0.05493145334571636
VTLRYGRILD	10	Unmodified	_VTLRYGRILD_					0	0	0		ENSG00000184857|ENST00000333050|TMEM186	ENSG00000184857|ENST00000333050|TMEM186	ENSG00000184857|ENST00000333050|TMEM186	MULTI-SECPEP	OvCa9_classI_Rep4_	4	402.259521484375	3	402.571545	1204.69281	2.095	0.00084337	-1.6088	-0.00064766	0.48615	0.00019571	402.57091478331665	64.362	0.34253	60.887	60.686	61.028	-3.475					9	6	2	0	0	0	0.026897	1	4580	4580		42.243	16.179	1	22442			62765	8196	51758	51808	68864	68864					0.09864767697104071
VTLSFGPAR	9	Unmodified	_VTLSFGPAR_					0	0	0			REV__ENST00000420915.1_1_X:26576018-26576444:+|nuORF	REV__ENST00000420915.1_1_X:26576018-26576444:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.750244140625	2	474.269084	946.523616	-0.56128	-0.0002662	4.2574	0.0020192	3.6962	0.001753	474.2712029270135	53.557	0.38721	53.557	53.305	53.692	0					12	8	2	0	0	0	0.027462	1	4240	4240		39.253	11.371	1	324330	+		62766	25597	51759	51809	68865	68865					0.048214911343848144
VTLSSLLFIP	10	Unmodified	_VTLSSLLFIP_					0	0	0		ENST00000377918.7_1_13:58206088-58206214:+|nuORF	ENST00000377918.7_1_13:58206088-58206214:+|nuORF	ENST00000377918.7_1_13:58206088-58206214:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.7954711914062	2	545.33135	1088.64815	-2.9407	-0.0016037	-3.5203	-0.0019198	-6.4611	-0.0035234	545.3300354511559	88.096	1.0576	85.493	85.179	86.237	-2.6027					41	20	3	0	0	0	0.026982	1	7597	7597		38.806	1.647	1	49819			62767	11095	51760	51810	68866	68866					0.10736943831057033
VTLSVLTKGL	10	Unmodified	_VTLSVLTKGL_					0	0	0			REV__ROS1|p.T1963Dfs*18|1|0.07|ENSG00000047936|chr6:117319921-117319922|-/GGCATGTTTGAAGAAAAATGATTGCCTGATAGGTC|frameshift_variant	REV__ROS1|p.T1963Dfs*18|1|0.07|ENSG00000047936|chr6:117319921-117319922|-/GGCATGTTTGAAGAAAAATGATTGCCTGATAGGTC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	515.8302001953125	2	515.828975	1029.6434	0.48529	0.00025033	-0.96586	-0.00049822	-0.48057	-0.00024789	515.8284227600024	132.78	1.9202	132.55	132.23	134.15	-0.22696					116	38	5	0	0	0	0.49595	1	13181	13181		54.722	0	1	1299600	+		62768	16664	51761	51811	68867	68867					0.1297605968827611
VTLSVLTKGL	10	Unmodified	_VTLSVLTKGL_					0	0	0			REV__ROS1|p.T1963Dfs*18|1|0.07|ENSG00000047936|chr6:117319921-117319922|-/GGCATGTTTGAAGAAAAATGATTGCCTGATAGGTC|frameshift_variant	REV__ROS1|p.T1963Dfs*18|1|0.07|ENSG00000047936|chr6:117319921-117319922|-/GGCATGTTTGAAGAAAAATGATTGCCTGATAGGTC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	515.8294067382812	2	515.828975	1029.6434	0.047341	2.442E-05	-0.33086	-0.00017066	-0.28352	-0.00014625	515.8287151259711	133.92	2.3165	132.79	132.47	134.79	-1.1226					129	46	5	0	0	0	0.30325	3	10845	10845;10871;10889		80.455	7.5754	1	885720	+		62769	16664	51761	51811	68868;68869;68870	68868					0.1297605968827611
VTLTIFTLLSN	11	Unmodified	_VTLTIFTLLSN_					0	0	0		L1MB2_dup734|chr2:41391481-41393110:-|2.5038669870492565|0.0056028466714037|8.8|420.0|103|3|anti-sense	L1MB2_dup734|chr2:41391481-41393110:-|2.5038669870492565|0.0056028466714037|8.8|420.0|103|3|anti-sense	L1MB2_dup734|chr2:41391481-41393110:-|2.5038669870492565|0.0056028466714037|8.8|420.0|103|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3544921875	2	611.358096	1220.70164	-3.1571	-0.0019301	-0.12375	-7.5658E-05	-3.2809	-0.0020058	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.71498	1	12865	12865		24.519	0.31644	1	666990			62770	14587	51762	51812	68871	68871					0.10011696542937898
VTLTIIAGAL	10	Unmodified	_VTLTIIAGAL_					0	0	0			REV__tr|A0A553SPM3|A0A553SPM3_NIACIAPCfamilypermeaseOS=NialliacirculansOX=1397GN=CEQ21_26690PE=4SV=1	REV__tr|A0A553SPM3|A0A553SPM3_NIACIAPCfamilypermeaseOS=NialliacirculansOX=1397GN=CEQ21_26690PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	486.3108215332031	2	486.310418	970.606283	0.91435	0.00044466	1.4675	0.00071368	2.3819	0.0011583	486.31179030634246	123.42	1.603	122.39	122.15	123.75	-1.0377					64	30	3	0	0	0	0.35697	2	9538	9538;9545		73.975	1.7207	1	196800	+		62771	30550	51763	51813	68872;68873	68872					0.11980388142512766
VTLTIPGPKH	10	Unmodified	_VTLTIPGPKH_					0	0	0			REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF	REV__ENST00000478247.1_1_3:183882805-183888540:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8175659179688	2	531.818941	1061.62333	0.089047	4.7357E-05	-3.7428	-0.0019905	-3.6538	-0.0019431	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.66721	1	13797	13797		34.173	6.0911	1	263230	+		62772	20691	51764	51814	68874	68874					0.09498308748334239
VTLTLLLNK	9	Unmodified	_VTLTLLLNK_					0	0	0			REV__nc|ENSG00000110436|P43004-3|SLC1A2	REV__nc|ENSG00000110436|P43004-3|SLC1A2	MULTI-SECPEP	OvCa9_classI_Rep2	2	507.3143615722656	2	507.831517	1013.64848	-0.9085	-0.00046137	-1.2042	-0.00061152	-2.1127	-0.0010729	507.8307385940268	104.11	0.74485	103.53	103.42	104.17	-0.57639					21	14	2	0	0	0	0.027455	1	9637	9637		42.396	0	1	24538	+		62773	17985	51765	51815	68875	68875					0.14220363550907678
VTLTLLLNK	9	Unmodified	_VTLTLLLNK_					0	0	0			REV__nc|ENSG00000110436|P43004-3|SLC1A2	REV__nc|ENSG00000110436|P43004-3|SLC1A2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	507.831517	1013.64848	-0.012274	-6.2329E-06	-1.5747	-0.0007997	-1.587	-0.00080593	507.83053640810465	105.03	0.52151	103.69	103.47	103.99	-1.3482	0.05946	1.4962E-06	NaN	42.396	17	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32557	+		62774	17985	51765	51815							0.14220363550907678
VTLTRRRTRMR	11	Unmodified	_VTLTRRRTRMR_					0	0	0		ENST00000282570.3_1_2:70057088-70064689:+|nuORF	ENST00000282570.3_1_2:70057088-70064689:+|nuORF	ENST00000282570.3_1_2:70057088-70064689:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	483.29296875	3	482.624649	1444.85212	-0.72602	-0.00035039	0.38091	0.00018384	-0.34511	-0.00016656	482.62494844895997	94.386	0.60774	92.491	92.307	92.914	-1.8956					15	11	2	0	0	0	0.026221	1	6136	6136		19.263	1.4295	1	21094			62775	10060	51766	51816	68876	68876					0.14748577773411853
VTLVRIADL	9	Unmodified	_VTLVRIADL_					0	0	0		ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENST00000529624.5_3_15:28877823-28916776:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	500.3146057128906	2	500.313492	998.612431	1.6895	0.00084528	-0.26775	-0.00013396	1.4218	0.00071132	500.31339006354045	125.88	1.7414	125.88	125.57	127.32	0					117	37	5	0	0	0	0.2784	2	14605	14605;14633		65.465	1.9315	1	17502000			62776	13276	51767	51817	68877;68878	68877					0.11306906374034043
VTLVRIADL	9	Unmodified	_VTLVRIADL_					0	0	0		ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENST00000529624.5_3_15:28877823-28916776:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	500.31378173828125	2	500.313492	998.612431	0.59332	0.00029685	-0.99705	-0.00049884	-0.40373	-0.00020199	500.3129079797688	127.44	1.7293	127.21	126.84	128.57	-0.2359					109	34	4	0	0	0	0.10502	7	12527	12503;12513;12520;12527;12545;12552;12571		95.815	16.103	1	1360100			62777	13276	51767	51817	68879;68880;68881;68882;68883;68884;68885	68882					0.11306906374034043
VTLVRIADL	9	Unmodified	_VTLVRIADL_					0	0	0		ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENST00000529624.5_3_15:28877823-28916776:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	500.3132019042969	2	500.313492	998.612431	0.37155	0.00018589	-0.7555	-0.00037799	-0.38395	-0.00019209	500.31302313941114	128.99	2.6573	127.9	127.57	130.22	-1.0933					135	53	5	0	0	0	0.14855	5	10168	10168;10186;10204;10216;10260		85.161	23.116	1	747300			62778	13276	51767	51817	68886;68887;68888;68889;68890	68886					0.11306906374034043
VTLVRIADL	9	Unmodified	_VTLVRIADL_					0	0	0		ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENST00000529624.5_3_15:28877823-28916776:+|nuORF	ENST00000529624.5_3_15:28877823-28916776:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.31195068359375	2	500.313492	998.612431	1.0798	0.00054023	-1.5065	-0.0007537	-0.42668	-0.00021347	500.31266361849487	129.33	2.2681	127.88	127.55	129.81	-1.4565					119	45	5	0	0	0	0.043101	8	12418	12382;12406;12418;12430;12455;12466;12479;12493		124.08	38.919	1	1004600			62779	13276	51767	51817	68891;68892;68893;68894;68895;68896;68897;68898	68893					0.11306906374034043
VTLYEQGEF	9	Unmodified	_VTLYEQGEF_					0	0	0		tr|A0A553SK13|A0A553SK13_NIACIThreonine--tRNAligaseOS=NialliacirculansOX=1397GN=thrSPE=3SV=1	tr|A0A553SK13|A0A553SK13_NIACIThreonine--tRNAligaseOS=NialliacirculansOX=1397GN=thrSPE=3SV=1	tr|A0A553SK13|A0A553SK13_NIACIThreonine--tRNAligaseOS=NialliacirculansOX=1397GN=thrSPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	543.81982421875	2	543.261122	1084.50769	0.11258	6.1163E-05	-3.7011	-0.0020107	-3.5886	-0.0019495	543.7601589664488	103.33	0.31625	101.89	101.76	102.08	-1.4347					8	5	2	0	0	0	0.027448	1	7144	7144		53.351	0	1	10804			62780	33566	51768	51818	68899	68899					-0.03118259893199138
VTLYSLRSF	9	Unmodified	_VTLYSLRSF_					0	0	0			REV__nc|ENSG00000164631|P17014-3|ZNF12	REV__nc|ENSG00000164631|P17014-3|ZNF12	MULTI-SECPEP	OvCa9_classI_Rep3	3	543.8180541992188	2	543.303124	1084.5917	0.19061	0.00010356	-1.1312	-0.00061461	-0.94063	-0.00051105	543.3021910537892	103.28	1.1025	101.85	101.66	102.76	-1.4347					34	20	2	0	0	0	0.027343	1	7126	7126		58.782	0	1	115340	+		62781	21006	51769	51819	68900	68900					0.05278315994382865
VTLYSLRSF	9	Unmodified	_VTLYSLRSF_					0	0	0			REV__nc|ENSG00000164631|P17014-3|ZNF12	REV__nc|ENSG00000164631|P17014-3|ZNF12	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.8187255859375	2	543.303124	1084.5917	-1.0712	-0.00058201	0.13201	7.1723E-05	-0.93922	-0.00051028	543.3030078975459	103.94	1.2575	101.82	101.64	102.9	-2.1192					48	23	3	0	0	0	0.027426	1	9405	9405		53.351	10.955	1	106270	+		62782	21006	51769	51819	68901	68901					0.05278315994382865
VTLYVSRGK	9	Unmodified	_VTLYVSRGK_					0	0	0		tr|A0A7D6VST0|A0A7D6VST0_9CLOTStk1familyPASTAdomain-containingSer/ThrkinaseOS=ClostridiumintestinaleOX=36845GN=pknBPE=4SV=1	tr|A0A7D6VST0|A0A7D6VST0_9CLOTStk1familyPASTAdomain-containingSer/ThrkinaseOS=ClostridiumintestinaleOX=36845GN=pknBPE=4SV=1	tr|A0A7D6VST0|A0A7D6VST0_9CLOTStk1familyPASTAdomain-containingSer/ThrkinaseOS=ClostridiumintestinaleOX=36845GN=pknBPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.2796630859375	2	511.803291	1021.59203	-0.99682	-0.00051018	0.74481	0.0003812	-0.25201	-0.00012898	511.80353775954643	27.716	0.39938	27.716	27.542	27.941	0					16	7	3	0	0	0	0.027462	1	862	862		32.812	0	1	269950			62783	35054	51770	51820	68902	68902					0.08209735714240196
VTMFFQKI	8	Unmodified	_VTMFFQKI_					0	0	0		ENSG00000111981|ENST00000229708|ULBP1	ENSG00000111981|ENST00000229708|ULBP1	ENSG00000111981|ENST00000229708|ULBP1	MULTI-MSMS	OvCa9_classI_Rep3	3	507.2802734375	2	507.278063	1012.54157	-0.55966	-0.0002839	4.2111	0.0021362	3.6515	0.0018523	507.28005450607697	73.387	1.6842	70.899	70.579	72.264	-2.4873					61	33	4	0	0	0	0.67745	1	3571	3571		47.916	9.1095	1	325510			62784	2870	51771	51821	68903	68903					0.03580490064882724
VTMGGGGG	8	Unmodified	_VTMGGGGG_					0	0	0		ENSG00000106351|ENST00000300176|AGFG2	ENSG00000106351|ENST00000300176|AGFG2	ENSG00000106351|ENST00000300176|AGFG2	MULTI-SECPEP	OvCa99_classI_Rep5	1	634.2894287109375	1	635.281737	634.27446	1.2387	0.00078691	2.3288	0.0014794	3.5675	0.0022664	635.2831901817483	131.89	1.0261	131.89	131.43	132.46	0					33	21	2	0	0	0	0.028476	1	15377	15377		4.3163	2.6972	1	214380			62785	2546	51772	51822	68904	68904					-0.05730595093825741
VTMIEQINL	9	Unmodified	_VTMIEQINL_					0	0	0			REV__ENSG00000170638|ENST00000380909|TRABD	REV__ENSG00000170638|ENST00000380909|TRABD	MULTI-SECPEP	OvCa9_classI_Rep3	3	530.3007202148438	2	530.788992	1059.56343	-0.87471	-0.00046429	-1.1703	-0.00062119	-2.045	-0.0010855	530.7881072952986	101.2	0.67273	99.591	99.194	99.866	-1.6053					18	12	2	0	0	0	0.027402	1	6866	6866		66.429	5.4573	1	35450	+		62786	21555	51773	51823	68905	68905					0.03603250022774773
VTMKEKLAR	9	Unmodified	_VTMKEKLAR_					0	0	0			REV__ENSG00000135835|ENST00000367588|KIAA1614	REV__ENSG00000135835|ENST00000367588|KIAA1614	MULTI-MSMS	OvCa9_classI_Rep3	3	538.3163452148438	2	538.318251	1074.62195	1.2512	0.00067356	-4.3889	-0.0023626	-3.1377	-0.0016891	538.3155795894885	71.752	2.0773	69.15	68.782	70.859	-2.6023					139	41	5	0	0	0	0.44568	1	3393	3393		47.657	0	1	1426400	+		62787	19326	51774	51824	68906	68906					0.08762351387917988
VTMKKIHHLL	10	Unmodified	_VTMKKIHHLL_					0	0	0			REV__ENSG00000111647|ENST00000279907|BLTP3B	REV__ENSG00000111647|ENST00000279907|BLTP3B	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.2238464355469	3	407.249638	1218.72708	0.43972	0.00017907	-3.6818	-0.0014994	-3.2421	-0.0013203	407.24816141533097	42.223	0.60516	42.223	41.681	42.286	0					16	13	2	0	0	0	0.02717	1	2622	2622		7.8045	0	1	41205	+		62788	18043	51775	51825	68907	68907					0.1264689258434828
VTMLFSQFKWF	11	Unmodified	_VTMLFSQFKWF_					0	0	0		ENST00000420283.2_1_6:116573500-116573923:-|nuORF	ENST00000420283.2_1_6:116573500-116573923:-|nuORF	ENST00000420283.2_1_6:116573500-116573923:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.2308044433594	3	478.581053	1432.72133	-0.87596	-0.00041922	-2.1322	-0.0010204	-3.0081	-0.0014396	478.5801878246744	66.193	0.48448	62.703	62.516	63	-3.4902					11	9	2	0	0	0	0.026324	1	4832	4832		11.932	0	1	27414			62789	11668	51776	51826	68908	68908					0.022277492819966938
VTMPPTSGPI	10	Unmodified	_VTMPPTSGPI_					0	0	0			REV__ENSG00000144597|ENST00000396842|EAF1	REV__ENSG00000144597|ENST00000396842|EAF1	MULTI-MSMS	OvCa99_classI_Rep5	1	500.261962890625	2	500.26261	998.510668	1.3743	0.00068751	-2.9651	-0.0014834	-1.5909	-0.00079584	500.2609959121263	147.53	1.7605	147.53	147.21	148.97	0					83	35	4	0	0	0	0.28845	1	17245	17245		82.241	2.5279	1	1454700	+		62790	19921	51777	51827	68909	68909					0.011352919599744382
VTMQGHTP	8	Oxidation (M)	_VTM(Oxidation (M))QGHTP_		VTM(1)QGHTP		VTM(50)QGHTP	0	0	1			REV__ENSG00000162434|ENST00000342505|JAK1	REV__ENSG00000162434|ENST00000342505|JAK1	MULTI-MSMS	OvCa9_classI_Rep3	3	443.7093505859375	2	443.708002	885.401452	-0.83129	-0.00036885	1.7971	0.0007974	0.96584	0.00042855	443.7087028952305	93.614	1.267	91.653	91.328	92.595	-1.9617					45	24	2	0	0	0	0.66704	1	5996	5996		50.025	7.5501	1	406370	+		62791	20735	51778	51828	68910	68910		484			-0.04583293939504074
VTMTASRML	9	Unmodified	_VTMTASRML_					0	0	0		ENSG00000162517|ENST00000373703|PEF1	ENSG00000162517|ENST00000373703|PEF1	ENSG00000162517|ENST00000373703|PEF1	MULTI-MSMS	OvCa99_classI_Rep5	1	505.26080322265625	2	505.262087	1008.50962	2.3047	0.0011645	0.070503	3.5622E-05	2.3752	0.0012001	505.2619238834536	76.154	1.2973	76.154	75.913	77.211	0					67	31	4	0	0	0	0.16562	1	7610	7610		82.241	15.811	1	6407400			62792	6190	51779	51829	68911	68911					0.005707543194148457
VTMVEMFYN	9	2 Oxidation (M)	_VTM(Oxidation (M))VEM(Oxidation (M))FYN_		VTM(1)VEM(1)FYN		VTM(69)VEM(69)FYN	0	0	2			REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14	REV__nc|ENSG00000135317|Q9Y5W7-2|SNX14	MULTI-MSMS	OvCa9_classI_Rep2	2	583.2487182617188	2	583.248843	1164.48313	0.67489	0.00039363	-0.53763	-0.00031357	0.13726	8.0057E-05	583.2484035489165	130.41	1.8783	130.18	129.81	131.69	-0.22696					86	37	3	0	0	0	0.24951	1	12843	12843		68.787	6.6794	1	516500	+		62793	19274	51780	51830	68912	68912		442;443			-0.0925297936255447
VTNAQKQGR	9	Unmodified	_VTNAQKQGR_					0	0	0			REV__tr|A0A553SGC0|A0A553SGC0_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_10580PE=4SV=1	REV__tr|A0A553SGC0|A0A553SGC0_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_10580PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.30487060546875	2	501.277972	1000.54139	0.54237	0.00027188	1.7293	0.00086684	2.2716	0.0011387	501.7836177141856	97.307	0.30669	94.929	94.758	95.065	-2.3786					9	5	3	0	0	0	0.027455	1	8596	8596		34.173	7.4796	1	25131	+		62794	29684	51781	51831	68913	68913					0.041142063892380065
VTNAQKQGR	9	Unmodified	_VTNAQKQGR_					0	0	0			REV__tr|A0A553SGC0|A0A553SGC0_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_10580PE=4SV=1	REV__tr|A0A553SGC0|A0A553SGC0_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_10580PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	501.277972	1000.54139	-0.49431	-0.00024779	-0.33594	-0.0001684	-0.83025	-0.00041619	501.7817347615653	95.916	0.29897	94.888	94.714	95.013	-1.0281	-0.020203	-0.0018195	NaN	19.997	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19627	+		62795	29684	51781	51831							0.041142063892380065
VTNAVLHEV	9	Unmodified	_VTNAVLHEV_					0	0	0		ENSG00000140718|ENST00000471389|FTO;nc|ENSG00000140718|Q9C0B1-4|FTO	ENSG00000140718|ENST00000471389|FTO	ENSG00000140718|ENST00000471389|FTO	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.2718811035156	2	491.271824	980.529095	0.52589	0.00025836	2.1	0.0010317	2.6259	0.00129	491.27243862074477	101.96	0.43269	101.96	101.73	102.17	0					23	9	3	0	0	0	0.027462	1	11372	11372		24.203	0	1	731640			62796	4871	51782	51832	68914	68914					0.03805169926192775
VTNFLLPSL	9	Unmodified	_VTNFLLPSL_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|35|1|sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|35|1|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	502.297607421875	2	502.294768	1002.57498	2.4305	0.0012208	0.071746	3.6038E-05	2.5023	0.0012569	502.2946601592348	121.21	0.69473	121.21	120.97	121.66	0					34	15	3	0	0	0	0.21231	1	13953	13953		74.255	2.9593	1	546560	+		62797	28487	51783	51833	68915	68915					0.07379815108436105
VTNFLLPSL	9	Unmodified	_VTNFLLPSL_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|35|1|sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|35|1|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	502.29205322265625	2	502.294768	1002.57498	-1.2673	-0.00063655	1.0716	0.00053825	-0.1957	-9.8298E-05	502.2950498761891	121.49	0.89074	121.29	121.05	121.94	-0.19719					39	17	3	0	0	0	0.46356	1	11761	11761		45.972	1.8554	1	73003	+		62798	28487	51783	51833	68916	68916					0.07379815108436105
VTNFLLPSL	9	Unmodified	_VTNFLLPSL_					0	0	0			REV__L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|35|1|sense	REV__L1PA3_dup1321|chr2:173527290-173533317:-|3.203320537107827|0.2637255971055219|3.6|413.0|35|1|sense	MULTI-MATCH	OvCa9_classI_Rep3	3		2	502.294768	1002.57498	0.96303	0.00048372	-1.2978	-0.00065187	-0.33476	-0.00016815	502.2938998756346	122.33	1.2072	121.3	121.01	122.21	-1.0286	0.029877	-0.0012117	NaN	74.255	49	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120190	+		62799	28487	51783	51833							0.07379815108436105
VTNIISVPV	9	Unmodified	_VTNIISVPV_					0	0	0			REV__tr|A0A553SPL4|A0A553SPL4_NIACIPTSsugartransportersubunitIIBOS=NialliacirculansOX=1397GN=CEQ21_26590PE=4SV=1	REV__tr|A0A553SPL4|A0A553SPL4_NIACIPTSsugartransportersubunitIIBOS=NialliacirculansOX=1397GN=CEQ21_26590PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	471.28790283203125	2	471.286943	940.559333	0.39577	0.00018652	0.059333	2.7963E-05	0.45511	0.00021449	471.2868394335814	72.34	7.0488	72.34	69.552	76.6	0					308	176	2	0	0	0	0.28934	1	7274	7274		64.207	0	1	3030900	+		62800	30546	51784	51834	68917	68917					0.0866752859137705
VTNIQQLTFE	10	Unmodified	_VTNIQQLTFE_					0	0	0			REV__nc|ENSG00000136603|P12757-3|SKIL	REV__nc|ENSG00000136603|P12757-3|SKIL	MULTI-MSMS	OvCa9_classI_Rep3	3	596.818603515625	2	596.814053	1191.61355	3.1335	0.0018701	0.67913	0.00040531	3.8127	0.0022754	596.8143723057162	57.305	2.9299	54.154	53.228	56.158	-3.1504					108	83	2	0	0	0	0.762	1	1746	1746		23.523	0.94304	1	40554	+		62801	19394	51785	51835	68918	68918					0.025410759522628723
VTNIQQLTFE	10	Unmodified	_VTNIQQLTFE_					0	0	0			REV__nc|ENSG00000136603|P12757-3|SKIL	REV__nc|ENSG00000136603|P12757-3|SKIL	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	596.814053	1191.61355	0.52057	0.00031068	2.4329	0.001452	2.9534	0.0017626	597.3180728920591	57.328	0.3566	53.983	53.883	54.24	-3.3449	-0.08556	0.0020779	NaN	23.523	11	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17124	+		62802	19394	51785	51835							0.025410759522628723
VTNIVISVGN	10	Unmodified	_VTNIVISVGN_					0	0	0			REV__ENST00000258169.8_1_16:82182192-82182318:-|nuORF	REV__ENST00000258169.8_1_16:82182192-82182318:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.7540588378906	2	508.292756	1014.57096	2.5942	0.0013186	-3.7168	-0.0018892	-1.1226	-0.00057059	508.2919331621927	100.62	0.99724	100.62	100.24	101.23	0					71	23	5	0	0	0	0.026653	1	11177	11177		41.427	1.3684	1	2922000	+		62803	23908	51786	51836	68919	68919					0.06425725614724342
VTNKRILLL	9	Unmodified	_VTNKRILLL_					0	0	0			REV__tr|A0A553STB4|A0A553STB4_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_04645PE=4SV=1	REV__tr|A0A553STB4|A0A553STB4_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_04645PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	536.2597045898438	2	535.358234	1068.70191	-0.19042	-0.00010194	-0.76548	-0.00040981	-0.9559	-0.00051175	535.3577668171542	85.957	0.70067	83.737	83.486	84.187	-2.2204					28	13	3	0	0	0	0.027462	1	5130	5130		8.2313	0	1	44699	+		62804	30943	51787	51837	68920	68920					0.1703116105340996
VTNKRILLL	9	Unmodified	_VTNKRILLL_					0	0	0			REV__tr|A0A553STB4|A0A553STB4_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_04645PE=4SV=1	REV__tr|A0A553STB4|A0A553STB4_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_04645PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	535.358234	1068.70191	0.38837	0.00020792	-1.7517	-0.00093781	-1.3634	-0.00072989	535.3571185306046	86.295	0.68938	83.648	83.443	84.133	-2.6463	-0.04431	-0.00087275	NaN	8.2313	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36127	+		62805	30943	51787	51837							0.1703116105340996
VTNSQKLQL	9	Unmodified	_VTNSQKLQL_					0	0	0		ASB6|p.K406Efs*14|1|0.07|ENSG00000148331|chr9:129637840-129637841|-/GAGCTGAGATTGCGCCACTGCACTC|frameshift_variant;ENSG00000148331|ENST00000277458|ASB6	ASB6|p.K406Efs*14|1|0.07|ENSG00000148331|chr9:129637840-129637841|-/GAGCTGAGATTGCGCCACTGCACTC|frameshift_variant	ASB6|p.K406Efs*14|1|0.07|ENSG00000148331|chr9:129637840-129637841|-/GAGCTGAGATTGCGCCACTGCACTC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.801025390625	2	515.798206	1029.58186	-0.2552	-0.00013163	2.1815	0.0011252	1.9263	0.00099356	515.7994265177601	65.061	0.91829	61.576	61.407	62.325	-3.4854					33	18	3	0	0	0	0.48047	1	4660	4660		44.377	5.1244	1	209220			62806	121	51788	51838	68921	68921					0.06825127989009161
VTNYKGKNI	9	Unmodified	_VTNYKGKNI_					0	0	0		tr|A0A7D6ZQU6|A0A7D6ZQU6_9CLOTAbrB/MazE/SpoVTfamilyDNA-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01810PE=4SV=1	tr|A0A7D6ZQU6|A0A7D6ZQU6_9CLOTAbrB/MazE/SpoVTfamilyDNA-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01810PE=4SV=1	tr|A0A7D6ZQU6|A0A7D6ZQU6_9CLOTAbrB/MazE/SpoVTfamilyDNA-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01810PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.3212280273438	2	518.792924	1035.57129	-0.46589	-0.0002417	-0.59981	-0.00031118	-1.0657	-0.00055288	518.7924366427447	103.89	1.8302	103.31	103.03	104.86	-0.57639					109	36	5	0	0	0	0.027462	1	9790	9790		10.265	3.0719	1	1661000			62807	35708	51789	51839	68922	68922					0.05493145334571636
VTNYNTVK	8	Unmodified	_VTNYNTVK_					0	0	0			REV__ENST00000488625.6_1_10:31676182-31816189:+|nuORF	REV__ENST00000488625.6_1_10:31676182-31816189:+|nuORF	MSMS	OvCa9_classI_Rep4_	4	469.7517395019531	2	469.750724	937.486896	NaN	NaN	NaN	NaN	NaN	NaN	NaN	68.849	1	65.358	64.858	65.858	-3.4902								0	0	0	0.30129	1	5126	5126		68.485	6.7934	1		+		62808	26624	51790	51840	68923	68923					0.01565194517809232
VTNYNTVKSFL	11	Unmodified	_VTNYNTVKSFL_					0	0	0			REV__ENST00000488625.6_1_10:31676182-31816189:+|nuORF	REV__ENST00000488625.6_1_10:31676182-31816189:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	643.8462524414062	2	643.342978	1284.6714	1.2513	0.00080502	-1.5004	-0.00096528	-0.2491	-0.00016026	643.3410976845515	150.71	1.0041	150.71	150.29	151.3	0					52	19	5	0	0	0	0.65063	1	17648	17648		40.058	2.2467	1	546800	+		62809	26624	51791	51841	68924	68924					0.040453378777101534
VTPEELVGR	9	Unmodified	_VTPEELVGR_					0	0	0		tr|A0A553SFS9|A0A553SFS9_NIACIATP-dependenthelicase/deoxyribonucleasesubunitBOS=NialliacirculansOX=1397GN=addBPE=3SV=1	tr|A0A553SFS9|A0A553SFS9_NIACIATP-dependenthelicase/deoxyribonucleasesubunitBOS=NialliacirculansOX=1397GN=addBPE=3SV=1	tr|A0A553SFS9|A0A553SFS9_NIACIATP-dependenthelicase/deoxyribonucleasesubunitBOS=NialliacirculansOX=1397GN=addBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.7614440917969	2	500.277106	998.53966	2.4805	0.0012409	-1.0841	-0.00054235	1.3964	0.0006986	500.77709362976725	98.823	0.80901	98.823	98.552	99.361	0					31	19	3	0	0	0	0.027441	1	10956	10956		25.574	1.3713	1	337320			62810	33072	51792	51842	68925	68925					0.040331525806209356
VTPEKAREI	9	Unmodified	_VTPEKAREI_					0	0	0			REV__ENST00000558165.3_1_15:76551458-76551893:-|nuORF	REV__ENST00000558165.3_1_15:76551458-76551893:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.8109741210938	2	521.798206	1041.58186	0.54	0.00028177	1.3701	0.00071491	1.9101	0.00099668	521.7991259521999	90.878	0.39928	90.878	90.698	91.098	0					16	9	2	0	0	0	0.027358	1	9746	9746		75.043	10.836	1	621290	+		62811	27585	51793	51843	68926	68926					0.0627312798899311
VTPIVITNMD	10	Unmodified	_VTPIVITNMD_					0	0	0		tr|A0A7D6ZUN2|A0A7D6ZUN2_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_00875PE=4SV=1	tr|A0A7D6ZUN2|A0A7D6ZUN2_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_00875PE=4SV=1	tr|A0A7D6ZUN2|A0A7D6ZUN2_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_00875PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.2674560546875	2	551.794275	1101.574	0.098279	5.423E-05	3.2634	0.0018007	3.3617	0.0018549	551.7958278454502	56.998	0.91695	53.653	53.476	54.393	-3.3449					27	17	2	0	0	0	0.026931	1	3683	3683		37.812	0	1	49321			62812	35778	51794	51844	68927	68927					0.027272326771935695
VTPIVITNMD	10	Unmodified	_VTPIVITNMD_					0	0	0		tr|A0A7D6ZUN2|A0A7D6ZUN2_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_00875PE=4SV=1	tr|A0A7D6ZUN2|A0A7D6ZUN2_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_00875PE=4SV=1	tr|A0A7D6ZUN2|A0A7D6ZUN2_9CLOTPTSglucosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_00875PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	551.794275	1101.574	-0.14352	-7.9195E-05	4.0158	0.0022159	3.8722	0.0021367	551.7963060662411	56.472	0.84258	53.668	53.424	54.266	-2.804	0.0072714	0.0005851	NaN	69.628	19	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12043			62813	35778	51794	51844							0.027272326771935695
VTPKLHIILA	10	Unmodified	_VTPKLHIILA_					0	0	0			REV__tr|A0A7D6VRY6|A0A7D6VRY6_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07490PE=4SV=1	REV__tr|A0A7D6VRY6|A0A7D6VRY6_9CLOTTranscriptionantiterminatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07490PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.2994384765625	2	552.860609	1103.70667	2.7129	0.0014999	-1.1496	-0.00063555	1.5633	0.00086431	552.8600958233292	90.248	0.36014	90.248	90.06	90.421	0					13	8	2	0	0	0	0.026849	1	9676	9676		32.812	8.6097	1	236270	+		62814	31456	51795	51845	68928	68928					0.1589604519617751
VTPKLPIFG	9	Unmodified	_VTPKLPIFG_					0	0	0			REV__CON__ENSEMBL:ENSBTAP00000024146;REV__nc|ENSG00000126838|P20742-2|PZP;REV__ENSG00000175899|ENST00000318602|A2M	REV__nc|ENSG00000126838|P20742-2|PZP	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.28118896484375	2	486.299853	970.585153	0.40706	0.00019795	-4.4592	-0.0021685	-4.0522	-0.0019706	486.29756054495016	92.827	1.3423	91.659	90.919	92.261	-1.168					41	25	3	0	0	0	0.027426	1	8326	8326		44.117	8.9161	1	40946	+	+	62815	28835;21922;16174	51796	51846	68929	68929					0.09868422833653767
VTPLLYNAV	9	Unmodified	_VTPLLYNAV_					0	0	0		ENSG00000169006|ENST00000306928|NTSR2	ENSG00000169006|ENST00000306928|NTSR2	ENSG00000169006|ENST00000306928|NTSR2	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.2879943847656	2	495.286943	988.559333	0.77728	0.00038497	-1.2443	-0.00061627	-0.46699	-0.00023129	495.28623750914176	110.62	1.8947	109.02	108.75	110.65	-1.6011					75	35	3	0	0	0	0.50149	1	10222	10222		42.396	5.237	1	550260			62816	6965	51797	51847	68930	68930					0.0645952859136969
VTPLRRPP	8	Unmodified	_VTPLRRPP_					0	0	0			REV__ENST00000471892.6_1_5:137503584-137506561:-|nuORF	REV__ENST00000471892.6_1_5:137503584-137506561:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	468.2706604003906	2	468.292894	934.571235	2.2293	0.001044	3.9659	0.0018572	6.1953	0.0029012	468.2945645936169	74.974	0.69506	74.974	74.635	75.33	0					31	16	3	0	0	0	0.028476	1	7422	7422		19.36	0	1	601520	+		62817	18130	51798	51848	68931	68931					0.10133190125225155
VTPPVLGRML	10	Unmodified	_VTPPVLGRML_					0	0	0		PCDHGB6|p.F515Tfs*16|1|0.14|ENSG00000253305|chr5:141409744-141409745|-/ACTCCTCCTGTCCTGGGCCGAATGCTCT|frameshift_variant	PCDHGB6|p.F515Tfs*16|1|0.14|ENSG00000253305|chr5:141409744-141409745|-/ACTCCTCCTGTCCTGGGCCGAATGCTCT|frameshift_variant	PCDHGB6|p.F515Tfs*16|1|0.14|ENSG00000253305|chr5:141409744-141409745|-/ACTCCTCCTGTCCTGGGCCGAATGCTCT|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	541.3453369140625	2	541.823169	1081.63179	-0.21171	-0.00011471	-2.7736	-0.0015028	-2.9853	-0.0016175	541.8214133290991	80.864	0.80332	79.169	78.917	79.721	-1.6951					26	15	3	0	0	0	0.026688	1	6898	6898		49.442	7.0454	1	68479			62818	15480	51799	51849	68932	68932					0.09423539393287683
VTPPVLGRML	10	Unmodified	_VTPPVLGRML_					0	0	0		PCDHGB6|p.F515Tfs*16|1|0.14|ENSG00000253305|chr5:141409744-141409745|-/ACTCCTCCTGTCCTGGGCCGAATGCTCT|frameshift_variant	PCDHGB6|p.F515Tfs*16|1|0.14|ENSG00000253305|chr5:141409744-141409745|-/ACTCCTCCTGTCCTGGGCCGAATGCTCT|frameshift_variant	PCDHGB6|p.F515Tfs*16|1|0.14|ENSG00000253305|chr5:141409744-141409745|-/ACTCCTCCTGTCCTGGGCCGAATGCTCT|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	541.823169	1081.63179	-0.26069	-0.00014125	-2.754	-0.0014922	-3.0147	-0.0016334	541.8213132423516	81.721	0.95621	79.399	79.106	80.062	-2.3226	0.16558	-0.00023721	NaN	49.442	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118660			62819	15480	51799	51849							0.09423539393287683
VTPPVLGRML	10	Unmodified	_VTPPVLGRML_					0	0	0		PCDHGB6|p.F515Tfs*16|1|0.14|ENSG00000253305|chr5:141409744-141409745|-/ACTCCTCCTGTCCTGGGCCGAATGCTCT|frameshift_variant	PCDHGB6|p.F515Tfs*16|1|0.14|ENSG00000253305|chr5:141409744-141409745|-/ACTCCTCCTGTCCTGGGCCGAATGCTCT|frameshift_variant	PCDHGB6|p.F515Tfs*16|1|0.14|ENSG00000253305|chr5:141409744-141409745|-/ACTCCTCCTGTCCTGGGCCGAATGCTCT|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	541.823169	1081.63179	-1.4326	-0.00077624	-1.9437	-0.0010531	-3.3763	-0.0018294	541.8219504404478	81.815	0.86813	79.132	78.963	79.832	-2.6829	-0.10098	0.00064086	NaN	49.442	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114070			62820	15480	51799	51849							0.09423539393287683
VTPQERYS	8	Unmodified	_VTPQERYS_					0	0	0		ENSG00000132763|ENST00000401061|MMACHC	ENSG00000132763|ENST00000401061|MMACHC	ENSG00000132763|ENST00000401061|MMACHC	MULTI-MSMS	OvCa9_classI_Rep4_	4	490.24566650390625	2	490.245806	978.47706	-0.21003	-0.00010296	-1.5886	-0.00077879	-1.7986	-0.00088175	490.2450385240117	63.057	3.0011	59.582	59.044	62.045	-3.475					145	61	4	0	0	0	0.73938	1	4423	4423		31.955	0.42505	1	4610600			62821	4171	51800	51850	68933	68933					-0.013039934875791914
VTPRRSWCT	9	Unmodified	_VTPRRSWCT_					0	0	0			REV__ENST00000314471.10_1_19:39847690-39860405:+|nuORF	REV__ENST00000314471.10_1_19:39847690-39860405:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	553.3101196289062	2	553.2822	1104.54985	0.13336	7.3786E-05	4.1469	0.0022944	4.2803	0.0023682	553.2839595995492	64.033	0.72917	60.558	60.251	60.98	-3.475					22	14	2	0	0	0	0.027462	1	4502	4502		21.96	0	1	24388	+		62822	24382	51801	51851	68934	68934					0.0017543703420415113
VTPTSDLPP	9	Unmodified	_VTPTSDLPP_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa99_classI_Rep5	1	463.7485046386719	2	463.745108	925.475663	1.1623	0.00053901	3.0415	0.0014105	4.2038	0.0019495	463.74645759674024	150.39	0.69867	150.39	150.14	150.84	0					23	13	2	0	0	0	0.52083	1	17603	17603		40.573	1.7665	1	119660	+		62823	28942;32737	51802	51852	68935	68935					0.009943724236563867
VTPTVTFSPL	10	Unmodified	_VTPTVTFSPL_					0	0	0			REV__ENSG00000129226|ENST00000250092|CD68	REV__ENSG00000129226|ENST00000250092|CD68	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.8090209960938	2	531.297507	1060.58046	-1.0643	-0.00056548	-3.9902	-0.00212	-5.0545	-0.0026854	531.29528653219	79.027	1.5723	76.275	75.853	77.425	-2.7514					58	31	3	0	0	0	0.026688	1	6463	6463		25.574	0	1	513600	+		62824	18890	51803	51853	68936	68936					0.05259493900234702
VTPVDPNAL	9	Unmodified	_VTPVDPNAL_					0	0	0		nc|ENSG00000099866|Q13477-4|MADCAM1;nc|ENSG00000099866|Q13477-2|MADCAM1;nc|ENSG00000099866|Q13477-3|MADCAM1;ENSG00000099866|ENST00000215637|MADCAM1	nc|ENSG00000099866|Q13477-4|MADCAM1	nc|ENSG00000099866|Q13477-4|MADCAM1	MULTI-MSMS	OvCa9_classI_Rep4_	4	463.2537841796875	2	463.2531	924.491647	-0.12571	-5.8237E-05	-0.014777	-6.8456E-06	-0.14049	-6.5083E-05	463.25297521688265	59.711	1.43	56.319	55.953	57.383	-3.392					75	28	4	0	0	0	0.2422	1	4003	4003		69.628	0	1	780060			62825	1984	51804	51854	68937	68937					0.02638078660550036
VTPVDPNAL	9	Unmodified	_VTPVDPNAL_					0	0	0		nc|ENSG00000099866|Q13477-4|MADCAM1;nc|ENSG00000099866|Q13477-2|MADCAM1;nc|ENSG00000099866|Q13477-3|MADCAM1;ENSG00000099866|ENST00000215637|MADCAM1	nc|ENSG00000099866|Q13477-4|MADCAM1	nc|ENSG00000099866|Q13477-4|MADCAM1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	463.2531	924.491647	-0.42089	-0.00019498	0.60241	0.00027907	0.18152	8.4088E-05	463.2532497322761	59.228	1.2449	56.448	56.036	57.281	-2.7801	0.071866	0.00030091	NaN	69.628	54	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	133060			62826	1984	51804	51854							0.02638078660550036
VTPVPWRA	8	Unmodified	_VTPVPWRA_					0	0	0			REV__ENST00000418109.5_1_3:49162285-49162342:-|nuORF	REV__ENST00000418109.5_1_3:49162285-49162342:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	463.26336669921875	2	463.266345	924.518136	-1.2798	-0.00059289	-3.0985	-0.0014354	-4.3783	-0.0020283	463.26483300638284	43.92	0.61045	43.92	43.694	44.305	0					26	13	3	0	0	0	0.71369	1	2941	2941		40.573	1.3198	1	535630	+		62827	25567	51805	51855	68938	68938					0.05285812342549434
VTPVQRIEPL	10	Unmodified	_VTPVQRIEPL_					0	0	0			REV__nc|ENSG00000112137|Q9C0D0-2|PHACTR1	REV__nc|ENSG00000112137|Q9C0D0-2|PHACTR1	MULTI-SECPEP	OvCa9_classI_Rep3	3	575.818603515625	2	576.342781	1150.67101	-1.6415	-0.00094609	1.7807	0.0010263	0.13915	8.02E-05	576.3436835927013	93.921	1.1692	91.96	91.526	92.696	-1.9617					71	22	5	0	0	0	0.027193	1	5993	5993		22.58	8.4425	1	477130	+		62828	18077	51806	51856	68939	68939					0.10169962948521061
VTQDEPGRI	9	Unmodified	_VTQDEPGRI_					0	0	0			REV__ENSG00000106628|ENST00000610533|POLD2	REV__ENSG00000106628|ENST00000610533|POLD2	MULTI-MSMS	OvCa9_classI_Rep2	2	507.7629699707031	2	507.764363	1013.51417	-0.75433	-0.00038302	-1.6017	-0.00081327	-2.356	-0.0011963	507.7634972764376	115.15	1.4832	115.03	114.8	116.28	-0.11777					77	29	3	0	0	0	0.44568	1	10972	10972		47.657	1.6851	1	179880	+		62829	17815	51807	51857	68940	68940					0.007956780581821477
VTQFAVHVE	9	Unmodified	_VTQFAVHVE_					0	0	0		ENST00000422665.1_1_1:155170029-155174976:+|nuORF	ENST00000422665.1_1_1:155170029-155174976:+|nuORF	ENST00000422665.1_1_1:155170029-155174976:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	515.301025390625	2	515.271824	1028.5291	-0.92197	-0.00047507	1.4155	0.00072938	0.49354	0.00025431	515.2720852377804	102.24	1.7299	101.55	101.04	102.77	-0.68459					78	34	4	0	0	0	0.027461	1	9533	9533		19.104	0	1	294280			62830	11697	51808	51858	68941	68941					0.015971699261854155
VTQFAVHVE	9	Unmodified	_VTQFAVHVE_					0	0	0		ENST00000422665.1_1_1:155170029-155174976:+|nuORF	ENST00000422665.1_1_1:155170029-155174976:+|nuORF	ENST00000422665.1_1_1:155170029-155174976:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	515.271824	1028.5291	0.91393	0.00047092	1.0244	0.00052782	1.9383	0.00099874	515.2721880846603	101.36	0.54317	101.36	101.06	101.61	0	-0.20155	0.00040494	NaN	32.812	31	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2810300			62831	11697	51808	51858							0.015971699261854155
VTQHQGFPGE	10	Unmodified	_VTQHQGFPGE_					0	0	0		PLEKHG2|p.D757G|1|0.03|ENSG00000090924|chr19:39423324-39423324|A/G|missense_variant	PLEKHG2|p.D757G|1|0.03|ENSG00000090924|chr19:39423324-39423324|A/G|missense_variant	PLEKHG2|p.D757G|1|0.03|ENSG00000090924|chr19:39423324-39423324|A/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.8566284179688	2	550.261988	1098.50942	0.60351	0.00033209	-2.4674	-0.0013577	-1.8639	-0.0010257	550.2603391465359	132.16	0.3721	132.16	131.95	132.32	0					9	7	2	0	0	0	0.026891	1	15339	15339		24.519	2.8169	1	25288			62832	15509	51809	51859	68942	68942					-0.035892060845753804
VTQKVNSLPSQ	11	Unmodified	_VTQKVNSLPSQ_					0	0	0			REV__tr|A0A553SP91|A0A553SP91_NIACICelldivisionproteinDivIBOS=NialliacirculansOX=1397GN=divIBPE=3SV=1	REV__tr|A0A553SP91|A0A553SP91_NIACICelldivisionproteinDivIBOS=NialliacirculansOX=1397GN=divIBPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	600.853271484375	2	600.832777	1199.651	0.49373	0.00029665	-1.6053	-0.00096452	-1.1116	-0.00066787	600.8310916991528	83.522	0.63354	80.859	80.388	81.022	-2.6629					16	12	2	0	0	0	0.025958	1	6962	6962		16.007	4.91	1	27394	+		62833	30514	51810	51860	68943	68943					0.05916167217901602
VTQPASLPR	9	Unmodified	_VTQPASLPR_					0	0	0		ENSG00000163026|ENST00000295148|WDCP;nc|ENSG00000163026|Q9H6R7-2|WDCP;nc|ENSG00000163026|Q9H6R7-3|WDCP	ENSG00000163026|ENST00000295148|WDCP	ENSG00000163026|ENST00000295148|WDCP	MULTI-MSMS	OvCa99_classI_Rep5	1	484.7802734375	2	484.779816	967.545079	-0.57003	-0.00027634	0.92096	0.00044646	0.35094	0.00017013	484.7803754535764	25.067	0.60624	25.067	24.636	25.242	0					15	11	2	0	0	0	0.48324	1	527	527		44.117	0	1	44454			62834	6256	51811	51861	68944	68944					0.06000876163079738
VTQQSQKAL	9	Unmodified	_VTQQSQKAL_					0	0	0			REV__nc|ENSG00000132554|Q8NE09-2|RGS22	REV__nc|ENSG00000132554|Q8NE09-2|RGS22	MSMS	OvCa9_classI_Rep4_	4	501.7821350097656	2	501.782556	1001.55056	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.184	1	65.696	65.196	66.196	-3.4875								0	0	0	0.17002	1	5167	5167		51.193	1.7511	1		+		62835	19086	51812	51862	68945	68945					0.04984554954910436
VTQRRHQP	8	Unmodified	_VTQRRHQP_					0	0	0		nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL	nc|ENSG00000197321|O95425-4|SVIL	nc|ENSG00000197321|O95425-4|SVIL	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.2661743164062	2	511.286131	1020.55771	-0.30227	-0.00015454	-3.9926	-0.0020414	-4.2949	-0.0021959	511.2840133773305	50.885	0.52424	50.885	50.64	51.164	0					17	11	2	0	0	0	0.028476	1	3896	3896		34.173	0	1	565000			62836	8700	51813	51863	68946	68946					0.048253323459903186
VTQYFILI	8	Unmodified	_VTQYFILI_					0	0	0		tr|A0A7D7A2V0|A0A7D7A2V0_9CLOTFlippaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18955PE=4SV=1	tr|A0A7D7A2V0|A0A7D7A2V0_9CLOTFlippaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18955PE=4SV=1	tr|A0A7D7A2V0|A0A7D7A2V0_9CLOTFlippaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18955PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.78863525390625	2	498.791861	995.569169	-0.82368	-0.00041084	-3.8314	-0.0019111	-4.6551	-0.0023219	498.78992392916325	116.11	3.0188	115.07	114.6	117.62	-1.0414					179	60	5	0	0	0	0.56113	1	8636	8636		71.378	0	1	2745900			62837	36091	51814	51864	68947	68947					0.07120716596762122
VTRAKLAFV	9	Unmodified	_VTRAKLAFV_					0	0	0			REV__ENSG00000160791|ENST00000292303|CCR5	REV__ENSG00000160791|ENST00000292303|CCR5	MULTI-MSMS	OvCa9_classI_Rep3	3	502.81304931640625	2	502.816202	1003.61785	-5.7843	-0.0029085	1.4056	0.00070674	-4.3788	-0.0022017	502.8168335130942	153.97	1.772	152.96	152.62	154.39	-1.0076					110	37	4	0	0	0	0.67509	1	13246	13246		23.042	1.0826	1	860080	+		62838	18559	51815	51865	68948	68948					0.11618629956501536
VTRDVLSLL	9	Unmodified	_VTRDVLSLL_					0	0	0		sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1;sp|P08546|DPOL_HCMVADNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL54PE=1SV=2	sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1	sp|Q6SW77|DPOL_HCMVMDNApolymerasecatalyticsubunitOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL54PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.290771484375	2	508.310949	1014.60735	-1.0206	-0.00051879	-0.89751	-0.00045622	-1.9181	-0.00097501	508.810965828453	116.63	0.19812	115.58	115.49	115.69	-1.0414					5	3	2	0	0	0	0.027462	1	8713	8713		53.351	0	1	3656.7			62839	32884	51816	51866	68949	68949					0.1006260251143658
VTRFVSYTP	9	Unmodified	_VTRFVSYTP_					0	0	0			REV__ENSG00000116544|ENST00000373347|DLGAP3	REV__ENSG00000116544|ENST00000373347|DLGAP3	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2474975585938	2	535.287474	1068.5604	1.0092	0.00054023	0.50265	0.00026906	1.5119	0.00080929	535.287703899797	114.08	0.36521	114.08	113.88	114.24	0					12	7	2	0	0	0	0.027462	1	13016	13016		30.318	0	1	116430	+		62840	18306	51817	51867	68950	68950					0.028857429602794582
VTRFYDIG	8	Unmodified	_VTRFYDIG_					0	0	0		tr|A0A553SSJ3|A0A553SSJ3_NIACIClassISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_03110PE=4SV=1	tr|A0A553SSJ3|A0A553SSJ3_NIACIClassISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_03110PE=4SV=1	tr|A0A553SSJ3|A0A553SSJ3_NIACIClassISAM-dependentmethyltransferaseOS=NialliacirculansOX=1397GN=CEQ21_03110PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	485.751953125	2	485.753267	969.491981	-1.0518	-0.00051093	-3.302	-0.001604	-4.3538	-0.0021149	485.75153925136453	44.323	1.3818	41.284	41.056	42.438	-3.0385					64	26	4	0	0	0	0.6962	1	2192	2192		44.117	5.3632	1	669360			62841	34381	51818	51868	68951	68951					0.0060149838041070325
VTRKRPSV	8	Unmodified	_VTRKRPSV_					0	0	0		ENST00000558197.1_1_15:33360200-33360248:-|nuORF	ENST00000558197.1_1_15:33360200-33360248:-|nuORF	ENST00000558197.1_1_15:33360200-33360248:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.7673034667969	2	471.795801	941.577048	-0.060041	-2.8327E-05	-3.8634	-0.0018227	-3.9234	-0.001851	471.79497139982357	55.63	0.35524	52.336	52.16	52.516	-3.2944					9	6	2	0	0	0	0.028476	1	3523	3523		76.774	7.9873	1	18000			62842	13695	51819	51869	68952	68952					0.10392288636899139
VTRLLPQF	8	Unmodified	_VTRLLPQF_					0	0	0			REV__nc|ENSG00000060237|Q9H4A3-5|WNK1	REV__nc|ENSG00000060237|Q9H4A3-5|WNK1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	488.2788391113281	2	487.295102	972.575651	-0.39294	-0.00019148	0.37183	0.00018119	-0.021116	-1.029E-05	487.2951334902635	104.15	1.102	102.03	101.75	102.85	-2.1192					45	20	3	0	0	0	0.028476	1	9507	9507		30.504	0	1	131820	+		62843	28719	51820	51870	68953	68953					0.0882665454812468
VTRLRAQV	8	Unmodified	_VTRLRAQV_					0	0	0		nc|ENSG00000157368|Q6ZMJ4-2|IL34	nc|ENSG00000157368|Q6ZMJ4-2|IL34	nc|ENSG00000157368|Q6ZMJ4-2|IL34	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.2333984375	2	471.795801	941.577048	-0.063236	-2.9834E-05	0.40638	0.00019173	0.34315	0.0001619	471.79584146726955	52.401	0.52691	52.401	52.17	52.697	0					27	11	3	0	0	0	0.028476	1	4103	4103		45.972	5.1941	1	1013800			62844	15116	51821	51871	68954	68954					0.1039228863688777
VTRLRAQV	8	Unmodified	_VTRLRAQV_					0	0	0		nc|ENSG00000157368|Q6ZMJ4-2|IL34	nc|ENSG00000157368|Q6ZMJ4-2|IL34	nc|ENSG00000157368|Q6ZMJ4-2|IL34	MULTI-MATCH	OvCa9_classI_Rep2	2		2	471.795801	941.577048	-1.1088	-0.00052315	-2.8184	-0.0013297	-3.9273	-0.0018529	471.7954759472243	55.267	0.34949	52.453	52.222	52.572	-2.8139	0.056475	-0.0027581	NaN	45.972	9	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	6887.7			62845	15116	51821	51871							0.1039228863688777
VTRPGPALP	9	Unmodified	_VTRPGPALP_					0	0	0		ENST00000581960.1_1_18:812149-812320:-|nuORF	ENST00000581960.1_1_18:812149-812320:-|nuORF	ENST00000581960.1_1_18:812149-812320:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	453.2829895019531	2	454.271627	906.528701	-0.2529	-0.00011489	0.53221	0.00024177	0.27931	0.00012688	454.27162191989385	80.626	0.48494	77.915	77.665	78.15	-2.7106					12	9	2	0	0	0	0.027462	1	6620	6620		25.45	6.3466	1	16001			62846	13999	51822	51872	68955	68955					0.07169794996980272
VTRPVVSLP	9	Unmodified	_VTRPVVSLP_					0	0	0		ENSG00000111145|ENST00000228741|ELK3	ENSG00000111145|ENST00000228741|ELK3	ENSG00000111145|ENST00000228741|ELK3	MULTI-SECPEP	OvCa9_classI_Rep3	3	484.7749328613281	2	484.300384	966.586216	-1.6595	-0.0008037	1.5193	0.00073581	-0.14018	-6.7888E-05	484.3004217651545	92.774	0.28266	90.813	90.698	90.981	-1.9617					8	5	2	0	0	0	0.027447	1	5894	5894		56.721	14.325	1	20708			62847	2810	51823	51873	68956	68956					0.10158637202562204
VTRQQELV	8	Unmodified	_VTRQQELV_					0	0	0		ENST00000595302.1_1_19:58864324-58864802:+|nuORF	ENST00000595302.1_1_19:58864324-58864802:+|nuORF	ENST00000595302.1_1_19:58864324-58864802:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.7781677246094	2	486.777274	971.539994	-0.30373	-0.00014785	0.24613	0.00011981	-0.057596	-2.8037E-05	486.77726950418986	74.302	0.90423	71.071	70.676	71.58	-3.2308					31	18	2	0	0	0	0.62934	1	5818	5818		57.811	0	1	732570			62848	14173	51824	51874	68957	68957					0.05308572300475589
VTRQWLTKS	9	Unmodified	_VTRQWLTKS_					0	0	0			REV__tr|A0A553SNW8|A0A553SNW8_NIACIZincmetalloproteaseOS=NialliacirculansOX=1397GN=rsePPE=3SV=1	REV__tr|A0A553SNW8|A0A553SNW8_NIACIZincmetalloproteaseOS=NialliacirculansOX=1397GN=rsePPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.8193969726562	2	559.819473	1117.62439	1.8922	0.0010593	-1.9168	-0.0010731	-0.024592	-1.3767E-05	559.8182232305395	35.669	1.0488	32.82	32.54	33.589	-2.849					55	20	4	0	0	0	0.62352	1	1192	1192		29.15	2.4566	1	213120	+		62849	30467	51825	51875	68958	68958					0.07028523117196528
VTRTYLFL	8	Unmodified	_VTRTYLFL_					0	0	0		nc|ENSG00000168216|Q9NUN5-3|LMBRD1;ENSG00000168216|ENST00000649934|LMBRD1	nc|ENSG00000168216|Q9NUN5-3|LMBRD1	nc|ENSG00000168216|Q9NUN5-3|LMBRD1	MULTI-MSMS	OvCa9_classI_Rep4_	4	506.794189453125	2	506.794935	1011.57532	-1.3101	-0.00066397	-3.6781	-0.001864	-4.9882	-0.002528	506.79321373025203	48.637	1.5556	45.529	45.141	46.697	-3.1077					92	29	4	0	0	0	0.67745	1	2722	2722		47.916	1.9434	1	1364100			62850	6879	51826	51876	68959	68959					0.06999234828265344
VTSATTLL	8	Unmodified	_VTSATTLL_					0	0	0			REV__ENST00000603731.1_2_7:35734046-35735162:-|nuORF	REV__ENST00000603731.1_2_7:35734046-35735162:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	402.5538330078125	2	403.236919	804.459284	1.519	0.00061252	0.26974	0.00010877	1.7887	0.00072128	403.2369515857148	57.522	0.25521	57.522	57.353	57.609	0					9	5	2	0	0	0	0.028476	1	4847	4847		40.573	8.6178	1	100740	+		62851	24350	51827	51877	68960	68960					0.04923291257580331
VTSDGYTL	8	Unmodified	_VTSDGYTL_					0	0	0			REV__nc|ENSG00000065923|Q96T83|SLC9A7	REV__nc|ENSG00000065923|Q96T83|SLC9A7	MULTI-SECPEP	OvCa99_classI_Rep5	1	427.74102783203125	2	428.208358	854.402163	2.8666	0.0012275	0.049115	2.1031E-05	2.9157	0.0012485	428.2081442517518	101.04	0.38116	101.04	100.81	101.19	0					12	8	2	0	0	0	0.028476	1	11215	11215		33.516	13.034	1	209980	+		62852	16805	51828	51878	68961	68961					-0.03086176018803144
VTSFCTHCD	9	Unmodified	_VTSFCTHCD_					0	0	0			REV__ENST00000392542.6_1_12:118457451-118457520:+|nuORF	REV__ENST00000392542.6_1_12:118457451-118457520:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.82061767578125	2	506.696777	1011.379	-0.77412	-0.00039224	1.8658	0.00094537	1.0916	0.00055313	507.1999110112036	104.31	0.41998	102.19	102.06	102.48	-2.1192					10	7	2	0	0	0	0.027462	1	9425	9425		10.866	2.1719	1	6364.6	+		62853	25262	51829	51879	68962	68962					-0.12623261399448893
VTSGPPRSVD	10	Unmodified	_VTSGPPRSVD_					0	0	0			REV__nc|ENSG00000123453|Q9UL12-2|SARDH	REV__nc|ENSG00000123453|Q9UL12-2|SARDH	MULTI-MSMS	OvCa9_classI_Rep2	2	507.76275634765625	2	507.764363	1013.51417	-0.75433	-0.00038302	-1.6017	-0.00081327	-2.356	-0.0011963	507.7634972764376	115.15	1.4832	115.03	114.8	116.28	-0.11777					77	29	3	0	0	0	0.61634	1	10999	10999		40.058	2.2467	1	179880	+		62854	18641	51830	51880	68963	68963					0.007956780581821477
VTSKALEL	8	Unmodified	_VTSKALEL_					0	0	0		nc|ENSG00000100979|P55058-3|PLTP;nc|ENSG00000100979|P55058-2|PLTP;ENSG00000100979|ENST00000372431|PLTP	nc|ENSG00000100979|P55058-3|PLTP	nc|ENSG00000100979|P55058-3|PLTP	MULTI-MSMS	OvCa99_classI_Rep5	1	430.7599182128906	2	430.758018	859.501483	-0.40159	-0.00017299	0.46454	0.0002001	0.06295	2.7116E-05	430.75807341984745	67.976	0.67557	67.976	67.723	68.398	0					33	16	3	0	0	0	0.53252	1	6392	6392		74.255	5.4682	1	1525800			62855	2127	51831	51881	68964	68964					0.06611266665947824
VTSKALEL	8	Unmodified	_VTSKALEL_					0	0	0		nc|ENSG00000100979|P55058-3|PLTP;nc|ENSG00000100979|P55058-2|PLTP;ENSG00000100979|ENST00000372431|PLTP	nc|ENSG00000100979|P55058-3|PLTP	nc|ENSG00000100979|P55058-3|PLTP	MULTI-MSMS	OvCa9_classI_Rep2	2	430.7579650878906	2	430.758018	859.501483	-0.070518	-3.0376E-05	-0.0041195	-1.7745E-06	-0.074638	-3.2151E-05	430.7579527292077	70.798	3.4249	68.227	67.563	70.988	-2.5707					181	65	5	0	0	0	0.33046	2	5668	5668;5674		101.6	13.846	1	1316200			62856	2127	51831	51881	68965;68966	68965					0.06611266665947824
VTSKALEL	8	Unmodified	_VTSKALEL_					0	0	0		nc|ENSG00000100979|P55058-3|PLTP;nc|ENSG00000100979|P55058-2|PLTP;ENSG00000100979|ENST00000372431|PLTP	nc|ENSG00000100979|P55058-3|PLTP	nc|ENSG00000100979|P55058-3|PLTP	MULTI-MSMS	OvCa9_classI_Rep4_	4	430.7590026855469	2	430.758018	859.501483	-0.18881	-8.133E-05	-0.13604	-5.8602E-05	-0.32485	-0.00013993	430.75794506933937	71.75	3.1403	68.293	67.874	71.015	-3.4563					177	64	5	0	0	0	0.38806	1	5491	5491		90.37	2.6155	1	4667500			62857	2127	51831	51881	68967	68967					0.06611266665947824
VTSKGVIRP	9	Unmodified	_VTSKGVIRP_					0	0	0			REV__ENST00000542905.1_1_12:4699579-4700481:+|nuORF	REV__ENST00000542905.1_1_12:4699579-4700481:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	478.799560546875	2	478.798009	955.581465	-0.016059	-7.6889E-06	-0.29286	-0.00014022	-0.30892	-0.00014791	478.7978201272586	51.187	1.4847	51.187	50.949	52.434	0					89	34	4	0	0	0	0.24951	1	3972	3972		68.787	5.4806	1	11795000	+		62858	27293	51832	51882	68968	68968					0.10189753059796658
VTSKILNKYQL	11	Unmodified	_VTSKILNKYQL_					0	0	0		nc|ENSG00000086717|O14829-2|PPEF1;nc|ENSG00000086717|O14829-3|PPEF1;ENSG00000086717|ENST00000470157|PPEF1	nc|ENSG00000086717|O14829-2|PPEF1	nc|ENSG00000086717|O14829-2|PPEF1	MULTI-MSMS	OvCa9_classI_Rep2	2	436.2615966796875	3	436.262489	1305.76564	0.012007	5.2382E-06	-2.4715	-0.0010782	-2.4594	-0.001073	436.2615773396781	64.106	2.7222	61.381	60.915	63.637	-2.7245					177	52	5	0	0	0	0.63942	1	4943	4943		41.08	6.9936	1	5858100			62859	14907	51833	51883	68969	68969					0.1249847669985229
VTSKILNKYQL	11	Unmodified	_VTSKILNKYQL_					0	0	0		nc|ENSG00000086717|O14829-2|PPEF1;nc|ENSG00000086717|O14829-3|PPEF1;ENSG00000086717|ENST00000470157|PPEF1	nc|ENSG00000086717|O14829-2|PPEF1	nc|ENSG00000086717|O14829-2|PPEF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.2624206542969	3	436.262489	1305.76564	0.30224	0.00013186	-2.8318	-0.0012354	-2.5296	-0.0011036	436.26132611896287	65.037	2.5312	61.551	61.163	63.694	-3.4854					175	51	6	0	0	0	0.57194	1	4721	4721		47.228	6.1476	1	6796800			62860	14907	51833	51883	68970	68970					0.1249847669985229
VTSLEKSLI	9	Unmodified	_VTSLEKSLI_					0	0	0		ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MSMS	OvCa9_classI_Rep2	2	495.2965087890625	2	495.297507	988.580462	1.9287	0.00095527	-2.4176	-0.0011974	-0.48887	-0.00024214	495.29619133273764	88.345	1.7759	86.977	86.641	88.417	-1.3676					106	35	4	0	0	0	0.068524	2	7723	7723;7728		108.09	8.7125	1	1318600			62861	9585	51834	51884	68971;68972	68971					0.08571493900228688
VTSLEKSLI	9	Unmodified	_VTSLEKSLI_					0	0	0		ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MSMS	OvCa9_classI_Rep3	3	495.29840087890625	2	495.297507	988.580462	-0.59494	-0.00029467	0.21543	0.0001067	-0.37951	-0.00018797	495.2974998070993	89.05	2.3659	86.919	86.607	88.973	-2.1309					110	46	4	0	0	0	0.083631	2	5466	5466;5472		101.6	5.4103	1	2173300			62862	9585	51834	51884	68973;68974	68973					0.08571493900228688
VTSLEKSLI	9	Unmodified	_VTSLEKSLI_					0	0	0		ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	ENSG00000277481|ENST00000620267|PKD1L3	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.29888916015625	2	495.297507	988.580462	0.62327	0.0003087	-1.1454	-0.00056733	-0.52216	-0.00025862	495.296795507755	89.52	1.9685	86.945	86.656	88.624	-2.575					102	38	4	0	0	0	0.083631	1	7671	7671		101.6	2.2258	1	1899800			62863	9585	51834	51884	68975	68975					0.08571493900228688
VTSLSLPV	8	Unmodified	_VTSLSLPV_					0	0	0		nc|ENSG00000250120|Q9Y5I2-3|PCDHA10;ENSG00000250120|ENST00000307360|PCDHA10;PCDHA10|p.T460Sfs*119|1|0.04|ENSG00000250120|chr5:140857426-140857427|-/G|frameshift_variant;nc|ENSG00000250120|Q9Y5I2-2|PCDHA10;nc|ENSG00000249158|Q9Y5I1-2|PCDHA11;ENSG00000249158|ENST00000398640|PCDHA11	nc|ENSG00000250120|Q9Y5I2-3|PCDHA10	nc|ENSG00000250120|Q9Y5I2-3|PCDHA10	MULTI-MSMS	OvCa99_classI_Rep5	1	408.248291015625	2	408.247286	814.48002	2.2921	0.00093574	-0.27407	-0.00011189	2.018	0.00082386	408.24705665452126	155.4	0.61375	155.4	155.12	155.73	0					17	11	2	0	0	0	0.74971	1	18214	18214		26.796	0	1	44206			62864	9416	51835	51885	68976	68976					0.06535881637228158
VTSLWGLLT	9	Unmodified	_VTSLWGLLT_					0	0	0		ENST00000246533.7_1_19:36640788-36640950:+|nuORF	ENST00000246533.7_1_19:36640788-36640950:+|nuORF	ENST00000246533.7_1_19:36640788-36640950:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	494.295654296875	2	495.286943	988.559333	-0.94025	-0.00046569	-3.9592	-0.0019609	-4.8994	-0.0024266	495.2848630439648	90.995	1.0099	88.932	88.689	89.699	-2.0624					36	19	2	0	0	0	0.027417	1	5740	5740		55.504	13.108	1	163870			62865	9777	51836	51886	68977	68977					0.0645952859136969
VTSLWGLLT	9	Unmodified	_VTSLWGLLT_					0	0	0		ENST00000246533.7_1_19:36640788-36640950:+|nuORF	ENST00000246533.7_1_19:36640788-36640950:+|nuORF	ENST00000246533.7_1_19:36640788-36640950:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	494.2961120605469	2	495.286943	988.559333	-0.43656	-0.00021622	-4.2421	-0.002101	-4.6786	-0.0023173	495.2847263758762	91.479	1.1645	88.937	88.708	89.873	-2.5425					37	22	2	0	0	0	0.027417	1	7986	7986		55.504	0	1	151950			62866	9777	51836	51886	68978	68978					0.0645952859136969
VTSPLHSIL	9	Unmodified	_VTSPLHSIL_					0	0	0			REV__ENST00000343110.2_1_1:203452523-203452736:+|nuORF	REV__ENST00000343110.2_1_1:203452523-203452736:+|nuORF	MSMS	OvCa99_classI_Rep5	1	483.7861633300781	2	483.784567	965.554582	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.8	1	100.8	100.3	101.3	0								0	0	0	0.13926	1	11189	11189		65.803	0	1		+		62867	24665	51837	51887	68979	68979					0.07042644448631563
VTSPQQKPKE	10	Unmodified	_VTSPQQKPKE_					0	0	0		ENST00000344423.9_1_8:28206100-28206229:-|nuORF	ENST00000344423.9_1_8:28206100-28206229:-|nuORF	ENST00000344423.9_1_8:28206100-28206229:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	571.3157958984375	2	571.31422	1140.61389	-1.292	-0.00073816	4.4564	0.002546	3.1644	0.0018078	571.3165780657878	75.255	1.5581	73.284	72.948	74.507	-1.9711					87	29	4	0	0	0	0.26424	1	6198	6198		85.161	2.4103	1	580650			62868	10611	51838	51888	68980	68980					0.0492049567212689
VTSPSALILL	10	Unmodified	_VTSPSALILL_					0	0	0		ENST00000518618.2_1_20:61917181-61919222:+|nuORF	ENST00000518618.2_1_20:61917181-61919222:+|nuORF	ENST00000518618.2_1_20:61917181-61919222:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.8302001953125	2	507.3157	1012.61685	1.7013	0.00086308	0.15161	7.6916E-05	1.8529	0.00094	507.31575778434126	113.72	0.57902	113.72	113.57	114.15	0					19	12	2	0	0	0	0.027213	1	12962	12962		56.721	7.2795	1	151210			62869	13073	51839	51889	68981	68981					0.11104370796954299
VTSTVCLAVL	10	Unmodified	_VTSTVCLAVL_					0	0	0		ENSG00000145217|ENST00000398516|SLC26A1	ENSG00000145217|ENST00000398516|SLC26A1	ENSG00000145217|ENST00000398516|SLC26A1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.8294372558594	2	503.286085	1004.55762	-1.5508	-0.00078052	-1.9122	-0.00096237	-3.463	-0.0017429	503.28476798879126	100.13	0.81518	97.806	97.468	98.283	-2.3253					25	15	2	0	0	0	0.027048	1	8909	8909		33.516	12.569	1	72367			62870	5209	51840	51890	68982	68982					0.0555215151110815
VTSVAKVVR	9	Unmodified	_VTSVAKVVR_					0	0	0		nc|ENSG00000165949|P40305-1|IFI27;ENSG00000165949|ENST00000612813|IFI27	nc|ENSG00000165949|P40305-1|IFI27	nc|ENSG00000165949|P40305-1|IFI27	MULTI-MSMS	OvCa9_classI_Rep2	2	479.80560302734375	2	479.805834	957.597115	-1.1769	-0.00056468	0.97933	0.00046989	-0.19756	-9.4789E-05	479.80618413013457	55.51	2.1832	52.706	52.282	54.465	-2.804					112	43	4	0	0	0	0.50149	1	3906	3906		42.396	13.247	1	873530			62871	6619	51841	51891	68983	68983					0.11662039576845018
VTSVLICATI	10	Unmodified	_VTSVLICATI_					0	0	0			REV__ENST00000465976.1_1_7:86827133-86832342:-|nuORF	REV__ENST00000465976.1_1_7:86827133-86832342:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	510.2906799316406	2	510.293911	1018.57327	-0.0091299	-4.6589E-06	-3.9247	-0.0020027	-3.9338	-0.0020074	510.291696493787	78.792	1.3673	77.052	76.459	77.826	-1.7398					78	26	4	0	0	0	0.53885	1	6600	6600		49.442	11.63	1	283110	+		62872	26181	51842	51892	68984	68984					0.06472438028151828
VTTALQLEAV	10	Unmodified	_VTTALQLEAV_					0	0	0			REV__ENSG00000083457|ENST00000263087|ITGAE	REV__ENSG00000083457|ENST00000263087|ITGAE	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.8021240234375	2	522.800414	1043.58628	-0.60017	-0.00031377	0.86359	0.00045148	0.26342	0.00013772	522.8007514166023	102.85	1.7277	100.65	100.25	101.98	-2.1994					65	32	4	0	0	0	0.40664	1	9300	9300		67.494	0.53175	1	465810	+		62873	17103	51843	51893	68985	68985					0.06622592411872574
VTTDIQVKV	9	Unmodified	_VTTDIQVKV_					0	0	0		nc|ENSG00000196235|O00267-2|SUPT5H;ENSG00000196235|ENST00000432763|SUPT5H;ENST00000599335.5_1_19:39959399-39965382:+|nuORF	nc|ENSG00000196235|O00267-2|SUPT5H	nc|ENSG00000196235|O00267-2|SUPT5H	MSMS	OvCa99_classI_Rep5	1	501.79736328125	2	501.795132	1001.57571	NaN	NaN	NaN	NaN	NaN	NaN	NaN	79.784	1	79.784	79.284	80.284	0								0	0	0	0.1023	1	8154	8154		70.816	1.1886	1				62874	8581	51844	51894	68986	68986					0.07498609757465147
VTTKLLKGY	9	Unmodified	_VTTKLLKGY_					0	0	0			REV__ENSG00000151704|ENST00000392666|KCNJ1	REV__ENSG00000151704|ENST00000392666|KCNJ1	MULTI-MSMS	OvCa99_classI_Rep5	1	511.8190612792969	2	511.815867	1021.61718	1.2211	0.00062499	0.48111	0.00024624	1.7022	0.00087123	511.8160681947702	145.5	2.3209	145.5	145.13	147.45	0					137	47	4	0	0	0	0.48324	1	17138	17138		44.117	1.6423	1	2939900	+		62875	20249	51845	51895	68987	68987					0.10723790516817644
VTTLHLWQSA	10	Unmodified	_VTTLHLWQSA_					0	0	0		nc|ENSG00000168778|Q96GX1-2|TCTN2;ENSG00000168778|ENST00000303372|TCTN2	nc|ENSG00000168778|Q96GX1-2|TCTN2	nc|ENSG00000168778|Q96GX1-2|TCTN2	MULTI-MSMS	OvCa9_classI_Rep3	3	578.3099975585938	2	578.31148	1154.60841	-5.0394	-0.0029143	2.8881	0.0016702	-2.1513	-0.0012441	578.3129890075253	149.06	1.3548	148.11	147.7	149.05	-0.95119					72	26	4	0	0	0	0.75313	1	12590	12590		24.519	0.99649	1	213080			62876	6940	51846	51896	68988	68988					0.03728816880334307
VTTQQLELL	9	Unmodified	_VTTQQLELL_					0	0	0			REV__nc|ENSG00000158636|Q7Z589-2|EMSY	REV__nc|ENSG00000158636|Q7Z589-2|EMSY	MULTI-MSMS	OvCa9_classI_Rep3	3	522.8019409179688	2	522.800414	1043.58628	-0.78114	-0.00040838	0.97045	0.00050735	0.1893	9.8967E-05	522.8007535698202	102.18	1.6733	100.66	100.27	101.94	-1.5211					69	31	4	0	0	0	0.055627	1	7022	7022		115.49	3.0831	1	499170	+		62877	20576	51847	51897	68989	68989					0.06622592411895312
VTTQQLELL	9	Unmodified	_VTTQQLELL_					0	0	0			REV__nc|ENSG00000158636|Q7Z589-2|EMSY	REV__nc|ENSG00000158636|Q7Z589-2|EMSY	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	522.800414	1043.58628	1.6641	0.00086998	0.68634	0.00035882	2.3504	0.0012288	522.8006218149252	100.37	0.66454	100.37	100.07	100.73	0	-0.23819	-0.00018753	NaN	115.49	44	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4235000	+		62878	20576	51847	51897							0.06622592411895312
VTTVNNVKP	9	Unmodified	_VTTVNNVKP_					0	0	0			REV__tr|A0A553SIJ0|A0A553SIJ0_NIACIPeptidaseS8OS=NialliacirculansOX=1397GN=CEQ21_14910PE=3SV=1	REV__tr|A0A553SIJ0|A0A553SIJ0_NIACIPeptidaseS8OS=NialliacirculansOX=1397GN=CEQ21_14910PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	485.8196105957031	2	486.279649	970.544745	2.6147	0.0012715	-0.89511	-0.00043527	1.7196	0.00083618	486.27951085961	107.67	0.41951	107.67	107.44	107.86	0					14	9	2	0	0	0	0.027462	1	12143	12143		35.618	14.671	1	325420	+		62879	29895	51848	51898	68990	68990					0.05829456443234449
VTTYFVSAVN	10	Unmodified	_VTTYFVSAVN_					0	0	0			REV__ENSG00000196119|ENST00000284287|OR8A1	REV__ENSG00000196119|ENST00000284287|OR8A1	MULTI-SECPEP	OvCa9_classI_Rep3	3	550.3274536132812	2	550.784764	1099.55498	-1.5581	-0.00085816	-1.5824	-0.00087158	-3.1405	-0.0017297	551.2848928789366	86.065	1.1526	83.844	83.134	84.287	-2.2204					32	22	2	0	0	0	0.026659	1	5122	5122		45.972	0	1	38895	+		62880	22785	51849	51899	68991	68991					0.009180193778320245
VTTYRPDL	8	Unmodified	_VTTYRPDL_					0	0	0			REV__nc|ENSG00000166575|Q86UB9-2|TMEM135	REV__nc|ENSG00000166575|Q86UB9-2|TMEM135	MULTI-MSMS	OvCa99_classI_Rep5	1	482.75927734375	2	482.758549	963.502546	1.5197	0.00073363	0.44496	0.00021481	1.9646	0.00094844	482.75863369433216	93.313	0.9147	93.313	92.926	93.841	0					46	21	3	0	0	0	0.42649	1	10114	10114		84.916	5.4645	1	3011600	+		62881	21207	51850	51900	68992	68992					0.01933481034848228
VTVAFHEAI	9	Unmodified	_VTVAFHEAI_					0	0	0			REV__ENST00000600795.1_1_11:77884868-77885513:+|nuORF	REV__ENST00000600795.1_1_11:77884868-77885513:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	493.7666015625	2	493.768917	985.523281	-0.34455	-0.00017013	-4.1087	-0.0020287	-4.4532	-0.0021989	493.76709506077066	63.641	0.99714	63.641	63.337	64.334	0					54	24	3	0	0	0	0.31747	1	5726	5726		60.972	0	1	6905500	+		62882	28032	51851	51901	68993	68993					0.029940714145027414
VTVDKGRR	8	Unmodified	_VTVDKGRR_					0	0	0			REV__ENSG00000186310|ENST00000373079|NAP1L3	REV__ENSG00000186310|ENST00000373079|NAP1L3	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.7766418457031	2	465.777608	929.540663	2.0038	0.00093333	-1.333	-0.0006209	0.67077	0.00031243	465.77638441145956	130.09	6.1548	128.62	125.6	131.75	-1.4779					205	123	4	0	0	0	0.73938	1	12422	12422		31.955	1.4512	1	56999	+		62883	22574	51852	51902	68994	68994					0.07307411740180214
VTVELNMLP	9	Unmodified	_VTVELNMLP_					0	0	0			REV__nc|ENSG00000164347|Q969S9-3|GFM2	REV__nc|ENSG00000164347|Q969S9-3|GFM2	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.3024597167969	2	508.27826	1014.54197	-0.83622	-0.00042503	-2.3942	-0.0012169	-3.2304	-0.001642	508.2770697171262	89.494	1.1627	87.413	86.945	88.108	-2.0805					39	22	2	0	0	0	0.027417	1	5454	5454		65.803	23.329	1	271230	+		62884	20981	51853	51903	68995	68995					0.03527864994077845
VTVEWLRI	8	Unmodified	_VTVEWLRI_					0	0	0			REV__NKIRAS1|p.V144I|1|0.18|ENSG00000197885|chr3:23893244-23893244|C/T|missense_variant	REV__NKIRAS1|p.V144I|1|0.18|ENSG00000197885|chr3:23893244-23893244|C/T|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	508.3020324707031	2	508.300384	1014.58622	1.4265	0.00072511	1.171	0.00059521	2.5975	0.0013203	508.30093068725466	90.387	2.8271	89.085	88.433	91.26	-1.302					94	54	2	0	0	0	0.64026	1	7992	7992		55.504	0	1	695110	+		62885	29254	51854	51904	68996	68996					0.07950637202554844
VTVFQGSKLV	10	Unmodified	_VTVFQGSKLV_					0	0	0			REV__ENST00000450663.1_1_1:173111074-173111284:-|nuORF	REV__ENST00000450663.1_1_1:173111074-173111284:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	539.3182373046875	2	539.318774	1076.623	-1.2049	-0.00064984	0.77502	0.00041798	-0.4299	-0.00023185	539.319023111798	127.88	1.2801	126.44	125.99	127.27	-1.4357					46	24	3	0	0	0	0.59317	1	12210	12210		42.864	0	1	179390	+		62886	25963	51855	51905	68997	68997					0.08774889028472899
VTVFVIMPI	9	Unmodified	_VTVFVIMPI_					0	0	0		tr|A0A7D6VNH8|A0A7D6VNH8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12960PE=4SV=1	tr|A0A7D6VNH8|A0A7D6VNH8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12960PE=4SV=1	tr|A0A7D6VNH8|A0A7D6VNH8_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12960PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.8034973144531	2	509.803914	1017.59328	2.0238	0.0010317	-2.3362	-0.001191	-0.31239	-0.00015926	509.80258654056354	136.53	4.9049	134.99	133.61	138.51	-1.5437					290	101	5	0	0	0	0.58665	1	13136	13136		33.516	4.3455	1	173450			62887	34707	51856	51906	68998	68998					0.08518233758763927
VTVHKPHI	8	Unmodified	_VTVHKPHI_					0	0	0		ENSG00000182950|ENST00000332145|ODF3L1	ENSG00000182950|ENST00000332145|ODF3L1	ENSG00000182950|ENST00000332145|ODF3L1	MULTI-MSMS	OvCa99_classI_Rep5	1	465.78076171875	2	465.779619	929.544686	2.2442	0.0010453	-0.69607	-0.00032422	1.5481	0.00072108	465.77912943432483	80.206	1.5835	80.206	79.16	80.744	0					85	38	3	0	0	0	0.64026	1	8191	8191		55.504	7.5886	1	1515800			62888	8042	51857	51907	68999	68999					0.07709501233898663
VTVIGIPKPK	10	Unmodified	_VTVIGIPKPK_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.P12974Lfs*4|1|0.05|ENSG00000155657|chr2:178631204-178631205|-/GTACA|frameshift_variant;TTN|p.E11597Rfs*5|1|0.5|ENSG00000155657|chr2:178651954-178651954|A/-|frameshift_variant;TTN|p.R11195Efs*5|1|0.15|ENSG00000155657|chr2:178674318-178674318|A/-|frameshift_variant;TTN|p.E9011Nfs*14|1|0.03|ENSG00000155657|chr2:178711255-178711255|T/-|frameshift_variant;TTN|p.G8550Tfs*3|1|0.05|ENSG00000155657|chr2:178714032-178714059|ATTTGTTGTCACTTGTTAGCTCTTTTCC/-|frameshift_variant;TTN|p.S7694Qfs*32|1|0.04|ENSG00000155657|chr2:178719360-178719360|G/-|frameshift_variant;TTN|p.C7689Pfs*18|1|0.03|ENSG00000155657|chr2:178719373-178719374|CA/-|frameshift_variant;TTN|p.L7641Yfs*6|1|0.07|ENSG00000155657|chr2:178719621-178719621|T/-|frameshift_variant;TTN|p.T6904Lfs*6|1|0.08|ENSG00000155657|chr2:178723439-178723439|T/-|frameshift_variant;TTN|p.V5150Afs*3|1|0.06|ENSG00000155657|chr2:178732661-178732661|A/-|frameshift_variant;TTN|p.R4157*|1|0.07|ENSG00000155657|chr2:178739814-178739815|-/C|frameshift_variant;TTN|p.E3802Dfs*59|1|0.05|ENSG00000155657|chr2:178740876-178740877|-/GAAGTAACAAGGTACATGCACATGATGTG|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa9_classI_Rep2	2	527.3216552734375	2	526.347335	1050.68012	-1.0411	-0.00054799	-0.49359	-0.0002598	-1.5347	-0.00080779	526.3467674952052	100.07	0.49487	99.236	99.063	99.558	-0.83051					13	9	2	0	0	0	0.026956	1	9175	9175		34.173	11.13	1	24919			62889	5793;36288	51858	51908	69000	69000					0.15680356304824272
VTVIIPHSSML	11	Unmodified	_VTVIIPHSSML_					0	0	0			REV__ENSG00000138792|ENST00000265162|ENPEP	REV__ENSG00000138792|ENST00000265162|ENPEP	MULTI-MSMS	OvCa9_classI_Rep2	2	598.8381958007812	2	598.839017	1195.66348	-0.083432	-4.9962E-05	-1.096	-0.00065631	-1.1794	-0.00070627	598.8381161590047	81.237	0.7063	79.589	79.265	79.971	-1.6485					40	13	4	0	0	0	0.64273	1	6901	6901		40.778	0	1	815950	+		62890	19573	51859	51909	69001	69001					0.0734748735658286
VTVLKTVTI	9	Unmodified	_VTVLKTVTI_					0	0	0			REV__ENSG00000196700|ENST00000369888|ZNF512B	REV__ENSG00000196700|ENST00000369888|ZNF512B	MULTI-MSMS	OvCa99_classI_Rep5	1	487.31915283203125	2	487.318243	972.621933	1.5885	0.00077411	0.66403	0.00032359	2.2525	0.0010977	487.31843476783564	109.97	2.1463	109.97	109.46	111.6	0					108	47	3	0	0	0	0.13504	1	12536	12536		87.696	2.5356	1	1616700	+		62891	22857	51860	51910	69002	69002					0.13452674659572494
VTVNGFGF	8	Unmodified	_VTVNGFGF_					0	0	0			REV__tr|A0A553SIS5|A0A553SIS5_NIACIPhosphoglucomutaseOS=NialliacirculansOX=1397GN=CEQ21_15425PE=3SV=1	REV__tr|A0A553SIS5|A0A553SIS5_NIACIPhosphoglucomutaseOS=NialliacirculansOX=1397GN=CEQ21_15425PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	420.6863708496094	2	420.716153	839.417754	1.6808	0.00070713	0.56995	0.00023979	2.2507	0.00094692	420.71625183999777	101.32	0.50042	101.32	101.11	101.61	0					17	11	2	0	0	0	0.028476	1	11292	11292		55.504	14.932	1	286050	+		62892	29923	51861	51911	69003	69003					-0.008378447110999332
VTVPPGPSL	9	Unmodified	_VTVPPGPSL_					0	0	0		nc|ENSG00000180764|A2A3N6|PIPSL;ENST00000480546.1_1_10:95718567-95721153:-|nuORF;nc|ENSG00000159352|P55036-2|PSMD4;ENSG00000159352|ENST00000368884|PSMD4	nc|ENSG00000180764|A2A3N6|PIPSL	nc|ENSG00000180764|A2A3N6|PIPSL	MULTI-MSMS	OvCa99_classI_Rep5	1	433.75408935546875	2	433.752736	865.490919	2.6891	0.0011664	-0.11668	-5.061E-05	2.5724	0.0011158	433.75254136505777	100.33	3.1055	100.33	99.318	102.42	0					177	73	3	0	0	0	0.009342	7	11116	11062;11092;11116;11147;11179;11209;11305		172.03	57.152	1	3963700			62893	12529	51862	51912	69004;69005;69006;69007;69008;69009;69010	69006					0.052792840115330364
VTVPRKIKS	9	Unmodified	_VTVPRKIKS_					0	0	0		nc|ENSG00000168619|Q9Y3Q7-3|ADAM18;nc|ENSG00000168619|Q9Y3Q7-2|ADAM18;ENSG00000168619|ENST00000265707|ADAM18	nc|ENSG00000168619|Q9Y3Q7-3|ADAM18	nc|ENSG00000168619|Q9Y3Q7-3|ADAM18	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.8002319335938	2	514.334759	1026.65496	0.071429	3.6738E-05	-0.61853	-0.00031813	-0.5471	-0.00028139	514.3343364267903	46.334	0.65002	46.334	46.069	46.719	0					24	14	2	0	0	0	0.027462	1	3233	3233		25.574	0	1	1665200			62894	6926	51863	51913	69011	69011					0.14270301502256189
VTVRDSVAEL	10	Unmodified	_VTVRDSVAEL_					0	0	0			REV__ENST00000556300.6_1_14:74417008-74425067:+|nuORF	REV__ENST00000556300.6_1_14:74417008-74425067:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	544.8016357421875	2	544.800946	1087.58734	1.7593	0.00095848	4.0301	0.0021956	5.7895	0.0031541	544.8030083171697	117.28	0.70444	117.28	117.04	117.74	0					30	14	3	0	0	0	0.1722	1	13427	13427		98.629	13.714	1	590180	+		62895	18465	51864	51914	69012	69012					0.04704806780796389
VTVRIPPR	8	Unmodified	_VTVRIPPR_					0	0	0			REV__ENSG00000160803|ENST00000368309|UBQLN4	REV__ENSG00000160803|ENST00000368309|UBQLN4	MULTI-SECPEP	OvCa9_classI_Rep2	2	470.2899169921875	2	469.300719	936.586885	-0.40853	-0.00019172	0.18196	8.5392E-05	-0.22657	-0.00010633	469.30056747478733	46.314	0.6437	43.605	43.2	43.844	-2.7097					18	12	2	0	0	0	0.028476	1	2743	2743		38.806	0	1	16110	+		62896	20675	51865	51915	69013	69013					0.11605476642273516
VTVSASAGIGH	11	Unmodified	_VTVSASAGIGH_					0	0	0		chr8:143021433-143031866|139|231.55|0.41|9.15|+|2|TE_info:LTR62,LTR62_dup139,ERVL,LTR,acceptor,+,143031866,143032468|LY6E,None|1	chr8:143021433-143031866|139|231.55|0.41|9.15|+|2|TE_info:LTR62,LTR62_dup139,ERVL,LTR,acceptor,+,143031866,143032468|LY6E,None|1	chr8:143021433-143031866|139|231.55|0.41|9.15|+|2|TE_info:LTR62,LTR62_dup139,ERVL,LTR,acceptor,+,143031866,143032468|LY6E,None|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	499.7647705078125	2	499.766906	997.519259	-1.053	-0.00052626	-3.1163	-0.0015574	-4.1694	-0.0020837	499.76572667649543	127.6	4.5409	126.16	125.39	129.93	-1.4357					197	90	5	0	0	0	0.3578	2	12226	12226;12325		64.207	12.159	1	12586000			62897	538	51866	51916	69014;69015	69014					0.02039981920813716
VTVSGTAVIV	10	Unmodified	_VTVSGTAVIV_					0	0	0		tr|A0A7D6ZHU4|A0A7D6ZHU4_9CLOTUPF0145proteinHZF06_01010OS=ClostridiumintestinaleOX=36845GN=HZF06_01010PE=3SV=1	tr|A0A7D6ZHU4|A0A7D6ZHU4_9CLOTUPF0145proteinHZF06_01010OS=ClostridiumintestinaleOX=36845GN=HZF06_01010PE=3SV=1	tr|A0A7D6ZHU4|A0A7D6ZHU4_9CLOTUPF0145proteinHZF06_01010OS=ClostridiumintestinaleOX=36845GN=HZF06_01010PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	474.2761535644531	2	473.2844	944.554247	0.038132	1.8047E-05	0.057927	2.7416E-05	0.096058	4.5463E-05	473.284300647311	52.804	1.5652	49.596	49.145	50.71	-3.208					59	30	3	0	0	0	0.026849	1	3297	3297		32.812	0	1	136520			62898	35589	51867	51917	69016	69016					0.07975224728761532
VTVTLSQL	8	Unmodified	_VTVTLSQL_					0	0	0			REV__ENSG00000055609|ENST00000262189|KMT2C	REV__ENSG00000055609|ENST00000262189|KMT2C	MULTI-MSMS	OvCa9_classI_Rep4_	4	430.7590026855469	2	430.758018	859.501483	-0.18881	-8.133E-05	-0.13604	-5.8602E-05	-0.32485	-0.00013993	430.75794506933937	71.75	3.1403	68.293	67.874	71.015	-3.4563					177	64	5	0	0	0	0.34187	1	5529	5529		99.375	0	1	4667500	+		62899	16712	51868	51918	69017	69017					0.06611266665947824
VTVTSVSSVL	10	Unmodified	_VTVTSVSSVL_					0	0	0		ENST00000303407.11_3_9:136896057-136896471:-|nuORF	ENST00000303407.11_3_9:136896057-136896471:-|nuORF	ENST00000303407.11_3_9:136896057-136896471:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.2479553222656	2	496.28714	990.559727	-0.2327	-0.00011549	1.1073	0.00054954	0.87459	0.00043405	496.2878836539389	68.743	0.99146	68.743	68.356	69.347	0					48	23	3	0	0	0	0.026936	1	6586	6586		74.255	0	1	1035900			62900	10215	51869	51919	69018	69018					0.0640690352056481
VTVVPPHPV	9	Unmodified	_VTVVPPHPV_					0	0	0		nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	nc|ENSG00000197558|A2VEC9|SSPOP	MULTI-MSMS	OvCa99_classI_Rep5	1	472.7799377441406	2	472.781828	943.549102	-0.55196	-0.00026095	-3.7535	-0.0017746	-4.3055	-0.0020356	472.7799609512212	25.681	0.34954	25.681	25.544	25.893	0					9	6	2	0	0	0	0.58665	1	598	598		33.516	0.70317	1	46857			62901	15250	51870	51920	69019	69019					0.07506965656796183
VTWRLILN	8	Unmodified	_VTWRLILN_					0	0	0			REV__ENSG00000198169|ENST00000292562|ZNF251	REV__ENSG00000198169|ENST00000292562|ZNF251	MULTI-MSMS	OvCa9_classI_Rep3	3	507.814208984375	2	507.808377	1013.6022	-0.96851	-0.00049182	1.2097	0.00061428	0.24116	0.00012246	507.81199809153236	97.179	3.3265	95.419	94.897	98.223	-1.7595					117	64	5	0	0	0	0.20102	2	6420	6391;6420		124.59	9.1353	1	1877500	+		62902	22994	51871	51921	69020;69021	69021					0.09594343439459863
VTWRLLSVE	9	Unmodified	_VTWRLLSVE_					0	0	0		nc|ENSG00000136161|O95199-2|RCBTB2;ENSG00000136161|ENST00000344532|RCBTB2	nc|ENSG00000136161|O95199-2|RCBTB2	nc|ENSG00000136161|O95199-2|RCBTB2	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.3029174804688	2	551.816399	1101.61824	2.182	0.0012041	-0.49053	-0.00027068	1.6915	0.00093341	551.8160998057442	95.847	0.68149	95.847	95.615	96.296	0					36	15	3	0	0	0	0.027448	1	10529	10529		27.882	0	1	2374200			62903	4468	51872	51922	69022	69022					0.07150004885693306
VTWRSHGR	8	Unmodified	_VTWRSHGR_					0	0	0			REV__ENST00000262650.10_3_20:32996490-33000341:+|nuORF	REV__ENST00000262650.10_3_20:32996490-33000341:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.3045959472656	2	499.767575	997.520596	-0.60073	-0.00030022	-3.3433	-0.0016709	-3.944	-0.0019711	499.7656547310055	95.034	1.1858	93.946	93.619	94.804	-1.0871					43	23	3	0	0	0	0.028476	1	8574	8574		17.365	0	1	95376	+		62904	23980	51873	51923	69023	69023					0.021736608002242974
VTYAKPLPT	9	Unmodified	_VTYAKPLPT_					0	0	0			REV__ENSG00000198765|ENST00000369522|SYCP1	REV__ENSG00000198765|ENST00000369522|SYCP1	MULTI-MSMS	OvCa9_classI_Rep3	3	495.288330078125	2	495.286943	988.559333	0.072907	3.611E-05	-0.4151	-0.0002056	-0.3422	-0.00016949	495.28661892712034	110.12	1.7438	108.97	108.66	110.41	-1.1444					79	33	4	0	0	0	0.3249	1	7993	7993		60.118	5.3419	1	451340	+		62905	23058	51874	51924	69024	69024					0.0645952859136969
VTYDSAMLATD	11	Unmodified	_VTYDSAMLATD_					0	0	0			REV__tr|A0A553SQJ4|A0A553SQJ4_NIACIParAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07800PE=4SV=1	REV__tr|A0A553SQJ4|A0A553SQJ4_NIACIParAfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_07800PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.3302001953125	2	593.768454	1185.52235	1.8523	0.0010998	-2.4478	-0.0014534	-0.59551	-0.0003536	593.7668272231937	108.82	0.43544	108.82	108.63	109.06	0					14	9	2	0	0	0	0.025257	1	12314	12314		36.447	11.928	1	96790	+		62906	30636	51875	51925	69025	69025					-0.06298555807347839
VTYLCLLTK	9	Unmodified	_VTYLCLLTK_					0	0	0			REV__sp|P09719|US14_HCMVAUncharacterizedproteinHVLF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US14PE=3SV=2	REV__sp|P09719|US14_HCMVAUncharacterizedproteinHVLF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US14PE=3SV=2	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.3163452148438	2	527.304278	1052.594	-0.60348	-0.00031822	4.0111	0.0021151	3.4076	0.0017969	527.3061595549002	29.493	0.24933	29.493	29.337	29.586	0					6	4	2	0	0	0	0.027462	1	1055	1055		39.253	11.371	1	11982	+		62907	29401	51876	51926	69026	69026					0.06981028407813028
VTYMLLRLN	9	Unmodified	_VTYMLLRLN_					0	0	0			REV__ENST00000355396.7_2_9:114803435-114803552:-|nuORF	REV__ENST00000355396.7_2_9:114803435-114803552:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	561.8214111328125	2	561.820627	1121.6267	2.4263	0.0013631	-3.8078	-0.0021393	-1.3816	-0.00077619	561.8185729824205	108.74	2.4089	108.74	107.9	110.31	0					132	54	4	0	0	0	0.3076	1	12341	12341		62.107	14.148	1	3717600	+		62908	24747	51877	51927	69027	69027					0.07075235530692225
VTYNYPVHY	9	Unmodified	_VTYNYPVHY_					0	0	0		nc|ENSG00000112697|Q9NV96-2|TMEM30A;ENSG00000112697|ENST00000230461|TMEM30A;nc|ENSG00000112697|Q9NV96-3|TMEM30A	nc|ENSG00000112697|Q9NV96-2|TMEM30A	nc|ENSG00000112697|Q9NV96-2|TMEM30A	MULTI-MSMS	OvCa99_classI_Rep5	1	578.278564453125	2	578.277106	1154.53966	0.59979	0.00034684	1.1115	0.00064274	1.7113	0.00098959	578.2775690807576	81.476	0.52805	81.476	81.248	81.776	0					37	12	4	0	0	0	0.047062	1	8395	8395		120.62	56.414	1	2647100			62909	2920	51878	51928	69028	69028					-0.03142847419394457
VTYRSDTL	8	Unmodified	_VTYRSDTL_					0	0	0		tr|A0A7D6VSD7|A0A7D6VSD7_9CLOTPenicillin-bindingtranspeptidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08865PE=3SV=1	tr|A0A7D6VSD7|A0A7D6VSD7_9CLOTPenicillin-bindingtranspeptidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08865PE=3SV=1	tr|A0A7D6VSD7|A0A7D6VSD7_9CLOTPenicillin-bindingtranspeptidasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08865PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	477.7675476074219	2	477.748182	953.481811	-0.24941	-0.00011916	0.15915	7.6033E-05	-0.090267	-4.3125E-05	477.74809284818275	87.187	1.4348	85.01	84.784	86.219	-2.1768					41	27	2	0	0	0	0.028476	1	5328	5328		65.803	0	1	125780			62910	35018	51879	51929	69029	69029					0.0032089065520040094
VTYSVEGFI	9	Unmodified	_VTYSVEGFI_					0	0	0		ENSG00000136286|ENST00000258787|MYO1G;MYO1G|p.N590Kfs*17|1|0.22|ENSG00000136286|chr7:44967617-44967618|-/C|frameshift_variant;nc|ENSG00000136286|B0I1T2-4|MYO1G;ENST00000483585.5_1_7:45006053-45011824:-|nuORF	ENSG00000136286|ENST00000258787|MYO1G	ENSG00000136286|ENST00000258787|MYO1G	MULTI-MSMS	OvCa99_classI_Rep5	1	507.760009765625	2	507.760758	1013.50696	1.8037	0.00091587	-4.1145	-0.0020892	-2.3108	-0.0011733	507.7585826998902	126.35	0.73572	126.35	126.13	126.87	0					33	15	3	0	0	0	0.34496	1	14615	14615		57.811	2.3071	1	296220			62911	4482	51880	51930	69030	69030					0.0007494545777717576
VVAARAKV	8	Unmodified	_VVAARAKV_					0	0	0			REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1	REV__nc|ENSG00000126500|Q9NZU1-1|FLRT1	MULTI-MSMS	OvCa99_classI_Rep5	1	407.26904296875	2	407.268887	812.523222	0.69881	0.0002846	-0.15752	-6.4152E-05	0.54129	0.00022045	407.26869117508505	42.518	0.81417	42.518	42.286	43.1	0					42	18	3	0	0	0	0.52992	1	2754	2754		74.517	0	1	2444500	+		62912	18785	51881	51931	69031	69031					0.10946116205172984
VVAGVARLG	9	Unmodified	_VVAGVARLG_					0	0	0			REV__nc|ENSG00000213638|Q96EY9|ADAT3	REV__nc|ENSG00000213638|Q96EY9|ADAT3	MULTI-MSMS	OvCa9_classI_Rep4_	4	421.26641845703125	2	421.266345	840.518136	-1.2006	-0.00050579	0.72037	0.00030347	-0.48026	-0.00020232	421.26666345540275	40.83	2.0659	37.876	37.421	39.487	-2.9541					132	39	5	0	0	0	0.50066	1	1795	1795		42.474	0	1	2205900	+		62913	23263	51882	51932	69032	69032					0.09149812342548103
VVAGVRAVA	9	Unmodified	_VVAGVRAVA_					0	0	0			REV__ENST00000441170.1_1_4:118496697-118497264:-|nuORF	REV__ENST00000441170.1_1_4:118496697-118497264:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	421.2665710449219	2	421.266345	840.518136	0.38381	0.00016169	-0.26705	-0.0001125	0.11676	4.9187E-05	421.2661241842314	40.583	1.4287	37.873	37.551	38.98	-2.7097					85	28	4	0	0	0	0.52083	1	2083	2083		40.573	5.3719	1	557040	+		62914	25841	51883	51933	69033	69033					0.09149812342548103
VVAKRPVKNWL	11	Unmodified	_VVAKRPVKNWL_					0	0	0			REV__ENSG00000204560|ENST00000376442|DHX16;REV__DHX16|p.C734Sfs*37|1|0.06|ENSG00000204560|chr6:30656707-30656707|C/-|frameshift_variant	REV__ENSG00000204560|ENST00000376442|DHX16	MULTI-MSMS	OvCa9_classI_Rep3	3	437.2742004394531	3	437.274952	1308.80303	1.0101	0.00044167	-4.3098	-0.0018846	-3.2998	-0.0014429	437.27305961907143	69.199	2.757	66.384	66.063	68.82	-2.8144					169	54	5	0	0	0	0.69424	1	3078	3078		31.634	4.8846	1	1037200	+		62915	23167;16292	51884	51934	69034	69034					0.1609761275612982
VVAMAGVCFLL	11	Carbamidomethyl (C),Oxidation (M)	_VVAM(Oxidation (M))AGVC(Carbamidomethyl (C))FLL_	VVAMAGVC(1)FLL	VVAM(1)AGVCFLL	VVAMAGVC(50)FLL	VVAM(50)AGVCFLL	0	1	1			REV__tr|A0A7D6ZPI3|A0A7D6ZPI3_9CLOTDUF554domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20435PE=4SV=1	REV__tr|A0A7D6ZPI3|A0A7D6ZPI3_9CLOTDUF554domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20435PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	598.3159790039062	2	598.31432	1194.61409	-0.34945	-0.00020908	2.6256	0.0015709	2.2761	0.0013618	598.3162323551261	107.59	8.1344	107.28	106.62	114.76	-0.30836					394	164	6	0	0	0	0.54124	1	10187	10187		50.025	10.772	1	20062000	+		62916	32137	51885	51935	69035	69035	372	715			0.024564560761518806
VVAQINLFL	9	Unmodified	_VVAQINLFL_					0	0	0		ENST00000400590.7_2_13:21952859-21957074:-|nuORF	ENST00000400590.7_2_13:21952859-21957074:-|nuORF	ENST00000400590.7_2_13:21952859-21957074:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	508.288330078125	2	508.810585	1015.60662	-1.0002	-0.00050894	0.11628	5.9164E-05	-0.88397	-0.00044977	509.3122384343616	121.25	0.34584	121.06	120.9	121.25	-0.19718					9	6	2	0	0	0	0.027462	1	11713	11713		17.365	0	1	7503.6			62917	11411	51886	51936	69036	69036					0.09943807862362064
VVARVLIPK	9	Unmodified	_VVARVLIPK_					0	0	0			REV__nc|ENSG00000178950|O14976-2|GAK	REV__nc|ENSG00000178950|O14976-2|GAK	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.7992248535156	2	497.84222	993.669886	-0.35432	-0.0001764	1.2419	0.00061825	0.88754	0.00044185	497.84253067158886	71.421	0.55742	71.421	71.15	71.707	0					17	13	2	0	0	0	0.027462	1	6912	6912		38.806	21.441	1	293830	+		62918	22089	51887	51937	69037	69037					0.17279793370278185
VVATAVGVL	9	Unmodified	_VVATAVGVL_					0	0	0		ENSG00000120436|ENST00000366834|GPR31	ENSG00000120436|ENST00000366834|GPR31	ENSG00000120436|ENST00000366834|GPR31	MULTI-MSMS	OvCa9_classI_Rep3	3	414.76153564453125	2	414.763104	827.511654	-1.3763	-0.00057084	-1.7682	-0.00073337	-3.1445	-0.0013042	414.7623056204016	140.83	3.4972	139.8	137.66	141.16	-1.0339					138	70	4	0	0	0	0.58665	1	11587	11587		33.516	0	1	1080700			62919	3430	51888	51938	69038	69038					0.09099874391188223
VVATGVKK	8	Unmodified	_VVATGVKK_					0	0	0		ENST00000440535.5_1_3:197342537-197350198:-|nuORF;ENST00000414207.5_1_3:197342537-197350198:-|nuORF	ENST00000440535.5_1_3:197342537-197350198:-|nuORF	ENST00000440535.5_1_3:197342537-197350198:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	401.26214599609375	2	401.263271	800.511988	1.296	0.00052003	-4.2066	-0.001688	-2.9106	-0.0011679	401.26147123184654	136.26	1.7613	136.04	135.22	136.99	-0.22696					76	35	3	0	0	0	0.75661	1	13563	13563		19.36	4.6959	1	533840			62920	11575	51889	51939	69039	69039					0.10375294111042876
VVATPRPKGRN	11	Unmodified	_VVATPRPKGRN_					0	0	0		ENSG00000044090|ENST00000265348|CUL7;nc|ENSG00000044090|Q14999-2|CUL7	ENSG00000044090|ENST00000265348|CUL7	ENSG00000044090|ENST00000265348|CUL7	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8555297851562	2	597.856921	1193.69929	-2.7036	-0.0016164	1.7084	0.0010214	-0.99524	-0.00059501	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.69455	1	12419	12419		31.53	3.4483	1	591030			62921	1130	51890	51940	69040	69040					0.11018705648461946
VVAVDRYLTI	10	Unmodified	_VVAVDRYLTI_					0	0	0		ENSG00000180245|ENST00000317735|RRH	ENSG00000180245|ENST00000317735|RRH	ENSG00000180245|ENST00000317735|RRH	MULTI-MSMS	OvCa9_classI_Rep4_	4	574.8367309570312	2	574.837331	1147.66011	-1.6765	-0.00096369	1.2277	0.00070574	-0.44875	-0.00025796	574.8376226281281	119.93	1.3637	118.59	117.98	119.35	-1.3444					59	25	3	0	0	0	0.48198	1	11278	11278		56.721	7.2795	1	121950			62922	7863	51891	51941	69041	69041					0.09218560574208823
VVAVDRYLTI	10	Unmodified	_VVAVDRYLTI_					0	0	0		ENSG00000180245|ENST00000317735|RRH	ENSG00000180245|ENST00000317735|RRH	ENSG00000180245|ENST00000317735|RRH	MULTI-MATCH	OvCa9_classI_Rep3	3		2	574.837331	1147.66011	0.081533	4.6868E-05	-0.51121	-0.00029386	-0.42968	-0.00024699	574.836713150853	119.63	1.2328	118.6	118.23	119.46	-1.0271	0.0070214	-0.00052045	NaN	56.721	59	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	119450			62923	7863	51891	51941							0.09218560574208823
VVAVESGNKTL	11	Unmodified	_VVAVESGNKTL_					0	0	0		tr|A0A7D6ZNN1|A0A7D6ZNN1_9CLOTTryptophansynthasebetachainOS=ClostridiumintestinaleOX=36845GN=trpBPE=3SV=1	tr|A0A7D6ZNN1|A0A7D6ZNN1_9CLOTTryptophansynthasebetachainOS=ClostridiumintestinaleOX=36845GN=trpBPE=3SV=1	tr|A0A7D6ZNN1|A0A7D6ZNN1_9CLOTTryptophansynthasebetachainOS=ClostridiumintestinaleOX=36845GN=trpBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	558.816650390625	2	558.816596	1115.61864	0.30325	0.00016946	0.12276	6.86E-05	0.42601	0.00023806	558.8161111583237	45.682	2.04	42.972	42.697	44.737	-2.7097					67	40	2	0	0	0	0.28332	2	2715	2709;2715		69.628	5.2204	1	1772600			62924	35683	51892	51942	69042;69043	69043					0.0654537981492922
VVAYLPVGL	9	Unmodified	_VVAYLPVGL_					0	0	0			REV__nc|ENSG00000122378|Q9BRX8-2|PRXL2A	REV__nc|ENSG00000122378|Q9BRX8-2|PRXL2A	MULTI-SECPEP	OvCa9_classI_Rep2	2	465.7518615722656	2	465.786579	929.558604	-0.60918	-0.00028375	-4.3456	-0.0020241	-4.9548	-0.0023079	465.78440449380065	47.188	0.98986	44.478	44.192	45.182	-2.7097					31	19	2	0	0	0	0.02744	1	2869	2869		49.211	8.6382	1	61301	+		62925	18591	51893	51943	69044	69044					0.09100733942329953
VVCFLIYLTIL	11	Unmodified	_VVCFLIYLTIL_					0	0	0		ENST00000463069.1_1_9:90254582-90254714:+|nuORF	ENST00000463069.1_1_9:90254582-90254714:+|nuORF	ENST00000463069.1_1_9:90254582-90254714:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	433.7756652832031	3	432.926049	1295.75632	-0.48389	-0.00020949	3.516	0.0015222	3.0321	0.0013127	432.9274651447804	83.559	0.69917	81.96	81.731	82.43	-1.5989					30	13	3	0	0	0	0.025714	1	7141	7141		38.754	14.522	1	24734			62926	12218	51894	51944	69045	69045					0.12026992089954547
VVCFLSPSTML	11	Unmodified	_VVCFLSPSTML_					0	0	0		ENST00000440928.5_1_1:240939211-240939331:-|nuORF	ENST00000440928.5_1_1:240939211-240939331:-|nuORF	ENST00000440928.5_1_1:240939211-240939331:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	598.8089599609375	2	598.806328	1195.5981	3.1513	0.001887	1.0543	0.00063132	4.2056	0.0025183	598.8073615391039	111.73	2.1287	110.63	110.35	112.48	-1.1038					128	42	5	0	0	0	0.32727	1	8146	8146		66.429	3.123	1	1163200			62927	11924	51895	51945	69046	69046					0.00812749839224125
VVCLVLCRF	9	Unmodified	_VVCLVLCRF_					0	0	0			REV__ENST00000241416.11_1_2:148602438-148602555:+|nuORF	REV__ENST00000241416.11_1_2:148602438-148602555:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.2932739257812	2	526.293191	1050.57183	-1.2935	-0.00068078	0.41353	0.00021764	-0.88	-0.00046314	526.2933084129968	40.432	1.2015	37.478	37.213	38.414	-2.9541					42	22	3	0	0	0	0.22913	1	1739	1739		71.378	1.7503	1	236120	+		62928	23823	51896	51946	69047	69047					0.04856525458399119
VVCLVLCRF	9	Unmodified	_VVCLVLCRF_					0	0	0			REV__ENST00000241416.11_1_2:148602438-148602555:+|nuORF	REV__ENST00000241416.11_1_2:148602438-148602555:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	526.293191	1050.57183	-1.2935	-0.00068078	0.41353	0.00021764	-0.88	-0.00046314	526.2933084129968	40.432	1.2015	37.478	37.213	38.414	-2.9541	-0.015603	0.00030871	NaN	71.378	42	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	236120	+		62929	23823	51896	51946							0.04856525458399119
VVDEPRLD	8	Unmodified	_VVDEPRLD_					0	0	0			REV__ENSG00000102362|ENST00000372989|SYTL4	REV__ENSG00000102362|ENST00000372989|SYTL4	MULTI-MSMS	OvCa9_classI_Rep2	2	471.7481994628906	2	471.748182	941.481811	-0.87595	-0.00041323	0.52109	0.00024582	-0.35487	-0.00016741	471.7482986041781	116.14	1.3366	116.03	115.69	117.02	-0.11777					59	26	3	0	0	0	0.7043	1	11125	11125		42.474	3.6683	1	260110	+		62930	17551	51897	51947	69048	69048					0.008728906551823457
VVDGVLEDIRL	11	Unmodified	_VVDGVLEDIRL_					0	0	0		ENSG00000151461|ENST00000357604|UPF2	ENSG00000151461|ENST00000357604|UPF2	ENSG00000151461|ENST00000357604|UPF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	409.5863342285156	3	409.902961	1226.68705	0.44393	0.00018197	-2.9384	-0.0012044	-2.4944	-0.0010225	409.9017642511221	35.151	0.47508	35.151	34.864	35.339	0					14	9	2	0	0	0	0.025722	1	1770	1770		48.602	28.571	1	28209			62931	5553	51898	51948	69049	69049					0.08277624394736449
VVDNLEIR	8	Unmodified	_VVDNLEIR_					0	0	0			REV__nc|ENSG00000162687|Q6UVM3-3|KCNT2	REV__nc|ENSG00000162687|Q6UVM3-3|KCNT2	MULTI-MSMS	OvCa9_classI_Rep2	2	479.2715759277344	2	479.271824	956.529095	-4.2096	-0.0020176	3.6975	0.0017721	-0.51213	-0.00024545	479.2735553092833	154.4	0.73885	154.17	153.96	154.7	-0.22696					21	15	2	0	0	0	0.75241	1	15730	15730		25.45	0	1	32049	+		62932	20764	51899	51949	69050	69050					0.049091699261907706
VVDTVVHYV	9	Unmodified	_VVDTVVHYV_					0	0	0		ENSG00000166819|ENST00000300055|PLIN1	ENSG00000166819|ENST00000300055|PLIN1	ENSG00000166819|ENST00000300055|PLIN1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.7793579101562	2	515.782025	1029.5495	2.2399	0.0011553	0.03051	1.5736E-05	2.2704	0.001171	515.7819034027499	84.452	0.49875	84.452	84.051	84.55	0					16	11	2	0	0	0	0.16524	1	8816	8816		82.305	16.84	1	1841700			62933	6716	51900	51950	69051	69051					0.03590340585992635
VVDTVVHYV	9	Unmodified	_VVDTVVHYV_					0	0	0		ENSG00000166819|ENST00000300055|PLIN1	ENSG00000166819|ENST00000300055|PLIN1	ENSG00000166819|ENST00000300055|PLIN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.782025	1029.5495	-0.95941	-0.00049484	-0.06088	-3.1401E-05	-1.0203	-0.00052624	515.7814636496179	85.626	0.79218	84.135	83.9	84.692	-1.4906	-0.15451	7.4351E-06	NaN	82.305	28	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	45460			62934	6716	51900	51950							0.03590340585992635
VVDTVVHYV	9	Unmodified	_VVDTVVHYV_					0	0	0		ENSG00000166819|ENST00000300055|PLIN1	ENSG00000166819|ENST00000300055|PLIN1	ENSG00000166819|ENST00000300055|PLIN1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	515.782025	1029.5495	-0.54661	-0.00028193	0.32692	0.00016862	-0.21969	-0.00011331	515.7818824842733	86.488	0.75417	84.312	83.979	84.734	-2.1768	0.021826	0.00040748	NaN	82.305	24	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	61084			62935	6716	51900	51950							0.03590340585992635
VVDTVVHYV	9	Unmodified	_VVDTVVHYV_					0	0	0		ENSG00000166819|ENST00000300055|PLIN1	ENSG00000166819|ENST00000300055|PLIN1	ENSG00000166819|ENST00000300055|PLIN1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	515.782025	1029.5495	0.33218	0.00017133	-4.0802	-0.0021045	-3.748	-0.0019332	515.7792955351954	86.887	1.0861	84.26	83.713	84.799	-2.6269	-0.029543	-0.0041387	NaN	82.305	30	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50312			62936	6716	51900	51950							0.03590340585992635
VVDVDANKVIL	11	Unmodified	_VVDVDANKVIL_					0	0	0		ENSG00000197892|ENST00000524189|KIF13B;ENST00000522846.1_1_8:29048390-29120551:-|nuORF	ENSG00000197892|ENST00000524189|KIF13B	ENSG00000197892|ENST00000524189|KIF13B	MULTI-MSMS	OvCa99_classI_Rep5	1	592.8497314453125	2	592.847896	1183.68124	2.1846	0.0012952	0.22717	0.00013468	2.4118	0.0014298	592.8478554341722	118.04	0.78732	118.04	117.74	118.53	0					34	16	3	0	0	0	0.43993	1	13522	13522		58.23	3.4536	1	953490			62937	8760	51901	51951	69052	69052					0.09674525883087881
VVEASKDIKLI	11	Unmodified	_VVEASKDIKLI_					0	0	0		tr|A0A553SPM8|A0A553SPM8_NIACIZincABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_26645PE=3SV=1	tr|A0A553SPM8|A0A553SPM8_NIACIZincABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_26645PE=3SV=1	tr|A0A553SPM8|A0A553SPM8_NIACIZincABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_26645PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	607.8698120117188	2	607.871371	1213.72819	0.51993	0.00031605	-3.8146	-0.0023188	-3.2947	-0.0020027	607.8690066923475	114.31	1.2876	114.31	114.06	115.35	0					89	27	4	0	0	0	0.5466	1	13112	13112		49.536	0.094497	1	8458200			62938	34064	51902	51952	69053	69053					0.12987385434234966
VVEDGVLPTIK	11	Unmodified	_VVEDGVLPTIK_					0	0	0			REV__tr|A0A553SP43|A0A553SP43_NIACISmallribosomalsubunitbiogenesisGTPaseRsgAOS=NialliacirculansOX=1397GN=rsgAPE=3SV=1	REV__tr|A0A553SP43|A0A553SP43_NIACISmallribosomalsubunitbiogenesisGTPaseRsgAOS=NialliacirculansOX=1397GN=rsgAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	585.341796875	2	585.342446	1168.67034	-0.27133	-0.00015882	0.069079	4.0435E-05	-0.20225	-0.00011839	585.3421704115536	115.44	1.4924	114.05	113.77	115.26	-1.3977					74	29	4	0	0	0	0.60323	1	10781	10781		44.377	0.7264	1	409870	+		62939	30490	51903	51953	69054	69054					0.09275123508814431
VVEEEEEGVA	10	Unmodified	_VVEEEEEGVA_					0	0	0		ENSG00000205903|ENST00000382252|ZNF316	ENSG00000205903|ENST00000382252|ZNF316	ENSG00000205903|ENST00000382252|ZNF316	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.361328125	2	545.250951	1088.48735	0.9221	0.00050278	-0.69773	-0.00038044	0.22437	0.00012234	545.2503766855739	156.65	1.0022	156.65	156.4	157.4	0					42	19	4	0	0	0	0.026871	1	18413	18413		29.15	15.012	1	275930			62940	9090	51904	51954	69055	69055					-0.053354753436451574
VVEEIHEDN	9	Unmodified	_VVEEIHEDN_					0	0	0			REV__tr|A0A7D6VRS1|A0A7D6VRS1_9CLOTFeMocofactorbiosynthesisproteinNifBOS=ClostridiumintestinaleOX=36845GN=nifBPE=3SV=1	REV__tr|A0A7D6VRS1|A0A7D6VRS1_9CLOTFeMocofactorbiosynthesisproteinNifBOS=ClostridiumintestinaleOX=36845GN=nifBPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.334716796875	2	542.251286	1082.48802	-0.26354	-0.00014291	1.2572	0.0006817	0.99363	0.0005388	542.2517291031322	29.91	0.74734	29.91	29.735	30.483	0					19	14	3	0	0	0	0.027462	1	1086	1086		23.042	0	1	72323	+		62941	31440	51905	51955	69056	69056					-0.04992635903954579
VVEGEPALLK	10	Unmodified	_VVEGEPALLK_					0	0	0			REV__ENSG00000163092|ENST00000409195|XIRP2	REV__ENSG00000163092|ENST00000409195|XIRP2	MULTI-SECPEP	OvCa9_classI_Rep2	2	528.3324584960938	2	527.810782	1053.60701	3.1206	0.0016471	4.325	0.0022828	7.4455	0.0039298	527.8130641853483	25.542	0.35461	22.832	22.679	23.033	-2.7097					12	7	3	0	0	0	0.027021	1	262	262		10.265	0	1	12563	+		62942	20806	51906	51956	69057	69057					0.08235182791554507
VVEKLTPK	8	Unmodified	_VVEKLTPK_					0	0	0			REV__ENST00000524833.5_1_11:107992333-108005114:+|nuORF	REV__ENST00000524833.5_1_11:107992333-108005114:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	457.7765197753906	2	457.289485	912.564418	-0.1163	-5.3183E-05	0.16379	7.4898E-05	0.047488	2.1716E-05	457.28955313240414	102.63	0.49326	101.94	101.64	102.13	-0.68459					20	9	3	0	0	0	0.028476	1	9450	9450		42.474	0	1	29996	+		62943	16966	51907	51957	69058	69058					0.10463832453990562
VVEKRKVT	8	Unmodified	_VVEKRKVT_					0	0	0			REV__tr|A0A553SKH5|A0A553SKH5_NIACITranscriptionelongationfactorGreAOS=NialliacirculansOX=1397GN=greAPE=3SV=1	REV__tr|A0A553SKH5|A0A553SKH5_NIACITranscriptionelongationfactorGreAOS=NialliacirculansOX=1397GN=greAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	479.289794921875	2	479.805834	957.597115	-0.95284	-0.00045718	0.189	9.0683E-05	-0.76384	-0.0003665	479.8056949949209	42.785	1.1528	39.778	39.591	40.744	-3.0074					43	21	3	0	0	0	0.028476	1	2097	2097		58.782	9.3404	1	133640	+		62944	30127	51908	51958	69059	69059					0.11662039576845018
VVEKRSFDL	9	Unmodified	_VVEKRSFDL_					0	0	0			REV__tr|A0A553SJA9|A0A553SJA9_NIACIAlpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_16360PE=3SV=1	REV__tr|A0A553SJA9|A0A553SJA9_NIACIAlpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_16360PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	546.8072509765625	2	546.806031	1091.59751	3.0324	0.0016581	-0.66851	-0.00036555	2.3639	0.0012926	546.8055794996549	97.417	1.0307	97.417	96.881	97.912	0					71	23	4	0	0	0	0.42676	1	10704	10704		49.442	0	1	4745700	+		62945	29987	51909	51959	69060	69060					0.05537414506034111
VVFAAPAYLL	10	Unmodified	_VVFAAPAYLL_					0	0	0			REV__ENSG00000203737|ENST00000367685|GPR52	REV__ENSG00000203737|ENST00000367685|GPR52	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.8169555664062	2	532.312961	1062.61137	1.1827	0.00062958	-1.8707	-0.00099577	-0.68793	-0.0003662	532.310634492149	137.09	0.29396	135.54	135.42	135.72	-1.5437					8	5	2	0	0	0	0.027147	1	13307	13307		12.959	0	1	14226	+		62946	23112	51910	51960	69061	69061					0.08256692005124933
VVFEQTKVIA	10	Unmodified	_VVFEQTKVIA_					0	0	0		chr12:6869390-6870077|334|126.14|0.16|9.63|+|2|TPI1,None|1;chr12:6869390-6870059|144|95.44|0.01|13.48|+|2|TPI1,None|1;chr12:6869390-6870055|101|194.79|0.0|24.22|+|2|TPI1,None|1;nc|ENSG00000111669|P60174-4|TPI1;ENSG00000111669|ENST00000396705|TPI1;nc|ENSG00000111669|P60174-3|TPI1	chr12:6869390-6870077|334|126.14|0.16|9.63|+|2|TPI1,None|1	chr12:6869390-6870077|334|126.14|0.16|9.63|+|2|TPI1,None|1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3296508789062	2	567.331882	1132.64921	-2.3399	-0.0013275	-1.3687	-0.0007765	-3.7086	-0.002104	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.74374	1	14477	14477		25.574	1.0549	1	241060			62947	332	51911	51961	69062	69062					0.0881915819995811
VVFFKTWKI	9	Unmodified	_VVFFKTWKI_					0	0	0			REV__ENSG00000130935|ENST00000253247|NOL11	REV__ENSG00000130935|ENST00000253247|NOL11	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.33251953125	2	584.349877	1166.6852	-0.079127	-4.6238E-05	1.8349	0.0010723	1.7558	0.001026	584.3512168371952	52.719	0.6967	52.719	52.434	53.131	0					22	15	3	0	0	0	0.027462	1	4136	4136		44.117	22.157	1	309820	+		62948	18981	51912	51962	69063	69063					0.10852660167461181
VVFGHEMI	8	Unmodified	_VVFGHEMI_					0	0	0			REV__tr|A0A7D6ZYH0|A0A7D6ZYH0_9CLOTUDP-N-acetylenolpyruvoylglucosaminereductaseOS=ClostridiumintestinaleOX=36845GN=murBPE=3SV=1	REV__tr|A0A7D6ZYH0|A0A7D6ZYH0_9CLOTUDP-N-acetylenolpyruvoylglucosaminereductaseOS=ClostridiumintestinaleOX=36845GN=murBPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.2385559082031	2	466.238938	930.463324	-1.071	-0.00049935	-3.2099	-0.0014966	-4.2809	-0.0019959	466.23740207591294	43.973	3.6033	40.966	40.22	43.824	-3.0074					174	69	4	0	0	0	0.60486	4	2127	2115;2127;2139;2164		62.978	8.2561	1	2152800	+		62949	32372	51913	51963	69064;69065;69066;69067	69065					-0.004689425203537212
VVFHLKRQR	9	Unmodified	_VVFHLKRQR_					0	0	0			REV__ENST00000380559.7_1_9:18706652-18908543:+|nuORF	REV__ENST00000380559.7_1_9:18706652-18908543:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	591.8643188476562	2	591.864549	1181.71454	0.72408	0.00042856	-0.48902	-0.00028943	0.23506	0.00013913	591.8641978183085	65.182	2.2339	62.236	61.844	64.078	-2.9459					105	43	4	0	0	0	0.52083	1	2604	2604		40.573	1.7665	1	184170	+		62950	22041	51914	51964	69068	69068					0.13095617236285761
VVFIFHVLV	9	Unmodified	_VVFIFHVLV_					0	0	0		GJB4|p.R32H|1|0.3|ENSG00000189433|chr1:34761349-34761349|G/A|missense_variant	GJB4|p.R32H|1|0.3|ENSG00000189433|chr1:34761349-34761349|G/A|missense_variant	GJB4|p.R32H|1|0.3|ENSG00000189433|chr1:34761349-34761349|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	536.82861328125	2	536.83132	1071.64809	-0.67581	-0.0003628	-3.1003	-0.0016643	-3.7761	-0.0020271	536.8295123243896	123.43	1.7257	123.2	122.7	124.42	-0.23193					89	34	4	0	0	0	0.22187	1	12013	12013		72.62	23.084	1	336830			62951	14341	51915	51965	69069	69069					0.11512988621689146
VVFIGRPID	9	Unmodified	_VVFIGRPID_					0	0	0			REV__ENSG00000175324|ENST00000311351|LSM1	REV__ENSG00000175324|ENST00000311351|LSM1	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.3028869628906	2	508.300384	1014.58622	-0.76496	-0.00038883	3.3715	0.0017138	2.6066	0.0013249	508.30206090776204	91.63	3.1704	89.087	88.142	91.312	-2.5425					143	63	4	0	0	0	0.40667	1	7892	7892		51.335	1.3109	1	903450	+		62952	21892	51916	51966	69070	69070					0.07950637202554844
VVFIPNIAN	9	Unmodified	_VVFIPNIAN_					0	0	0		tr|A0A7D6ZW84|A0A7D6ZW84_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_06955PE=3SV=1	tr|A0A7D6ZW84|A0A7D6ZW84_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_06955PE=3SV=1	tr|A0A7D6ZW84|A0A7D6ZW84_9CLOTAI-2EfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_06955PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.29986572265625	2	493.78711	985.559667	0.11488	5.6724E-05	-1.7496	-0.00086394	-1.6347	-0.00080722	493.7853866129353	93.955	2.57	92.855	91.825	94.395	-1.0995					98	50	3	0	0	0	0.027462	1	8365	8365		25.45	0	1	200810			62953	35830	51917	51967	69071	69071					0.06630948311226348
VVFLFCLLLL	10	Unmodified	_VVFLFCLLLL_					0	0	0		ENST00000467269.5_1_19:54867963-54872541:-|nuORF;ENST00000460312.1_1_19:54867963-54868654:-|nuORF;nc|ENSG00000167613|Q6GTX8-4|LAIR1;nc|ENSG00000167613|Q6GTX8-3|LAIR1;nc|ENSG00000167613|Q6GTX8-2|LAIR1;ENSG00000167613|ENST00000391742|LAIR1	ENST00000467269.5_1_19:54867963-54872541:-|nuORF	ENST00000467269.5_1_19:54867963-54872541:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	590.2940673828125	2	590.364139	1178.71372	-2.1344	-0.00126	2.3756	0.0014025	0.24126	0.00014243	590.3650742579016	103.84	0.33752	103.84	103.69	104.02	0					13	7	2	0	0	0	0.027147	1	11639	11639		26.796	13.837	1	157770			62954	6814	51918	51968	69072	69072					0.13151641752392607
VVFLTIHHK	9	Unmodified	_VVFLTIHHK_					0	0	0			REV__nc|ENSG00000158731|Q8NGY7|OR10J6P	REV__nc|ENSG00000158731|Q8NGY7|OR10J6P	MULTI-MSMS	OvCa9_classI_Rep3	3	547.3280639648438	2	547.329476	1092.6444	-1.0329	-0.00056535	-3.2087	-0.0017562	-4.2416	-0.0023216	547.3277122576889	94.735	1.8458	92.839	92.358	94.204	-1.8956					106	36	5	0	0	0	0.19716	1	6137	6137		76.847	8.3619	1	1623200	+		62955	28952	51919	51969	69073	69073					0.10178318847852097
VVFPQRKMDM	10	Unmodified	_VVFPQRKMDM_					0	0	0		ENSG00000157423|ENST00000393567|HYDIN;HYDIN|p.D3716Mfs*6|1|0.06|ENSG00000157423|chr16:70868734-70868734|C/-|frameshift_variant;ENST00000309900.11_1_16:70928350-70955090:-|nuORF	ENSG00000157423|ENST00000393567|HYDIN	ENSG00000157423|ENST00000393567|HYDIN	MULTI-SECPEP	OvCa9_classI_Rep2	2	416.8528137207031	3	417.550988	1249.63113	0.24497	0.00010229	-2.614	-0.0010915	-2.369	-0.00098918	417.5499179364272	67.103	0.9914	64.442	64.049	65.041	-2.661					22	19	2	0	0	0	0.026906	1	5196	5196		15.333	0	1	11776			62956	5891	51920	51970	69074	69074					0.01630376681919188
VVFTPGDIF	9	Unmodified	_VVFTPGDIF_					0	0	0		tr|A0A7D6VR44|A0A7D6VR44_9CLOTPLP-dependentaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23425PE=3SV=1	tr|A0A7D6VR44|A0A7D6VR44_9CLOTPLP-dependentaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23425PE=3SV=1	tr|A0A7D6VR44|A0A7D6VR44_9CLOTPLP-dependentaminotransferasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23425PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	497.76580810546875	2	497.765843	993.517133	-0.55339	-0.00027546	-0.88891	-0.00044247	-1.4423	-0.00071793	497.76504307671826	24.358	0.44819	24.358	24.188	24.636	0					18	8	4	0	0	0	0.65476	1	443	443		25.45	0	1	45549			62957	34893	51921	51971	69075	69075					0.020115531829901556
VVFVIDPGFAK	11	Unmodified	_VVFVIDPGFAK_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	OvCa9_classI_Rep3	3	596.3427124023438	2	596.342249	1190.66995	1.842	0.0010985	-1.9823	-0.0011821	-0.14027	-8.3646E-05	596.340927077194	120.1	1.9722	119.07	118.77	120.75	-1.0271					69	38	4	0	0	0	0.13051	2	9139	9139;9144		90.601	52.789	1	149450			62958	2719	51922	51972	69076;69077	69076					0.08223748579621315
VVFVIDPGFAK	11	Unmodified	_VVFVIDPGFAK_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MSMS	OvCa9_classI_Rep4_	4	596.34228515625	2	596.342249	1190.66995	-0.58776	-0.00035051	0.63503	0.00037869	0.047266	2.8186E-05	596.3424608933283	120.31	1.3412	118.96	118.67	120.01	-1.3444					57	25	4	0	0	0	0.11855	2	11309	11309;11322		93.143	30.038	1	162550			62959	2719	51922	51972	69078;69079	69078					0.08223748579621315
VVFVIDPGFAK	11	Unmodified	_VVFVIDPGFAK_					0	0	0		ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	ENSG00000109606|ENST00000336812|DHX15	MULTI-MATCH	OvCa9_classI_Rep2	2		2	596.342249	1190.66995	-2.0968	-0.0012504	2.1376	0.0012748	0.040797	2.4329E-05	596.3433382675313	119.38	1.4286	119.21	118.96	120.38	-0.17137	0.12846	0.0025175	NaN	93.143	51	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110830			62960	2719	51922	51972							0.08223748579621315
VVGAASLGPL	10	Unmodified	_VVGAASLGPL_					0	0	0			REV__ENST00000536690.1_1_11:64064895-64067293:+|nuORF	REV__ENST00000536690.1_1_11:64064895-64067293:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	442.2666931152344	2	442.26601	882.517468	-0.55069	-0.00024355	0.38544	0.00017047	-0.16526	-7.3087E-05	442.26593561826763	62.879	2.7177	59.421	58.57	61.288	-3.4577					114	55	4	0	0	0	0.43592	1	4419	4419		63.306	6.5852	1	936690	+		62961	27302	51923	51973	69080	69080					0.07150972902854846
VVGAKSLK	8	Unmodified	_VVGAKSLK_					0	0	0			REV__ENST00000496567.5_1_9:97782205-97782394:+|nuORF	REV__ENST00000496567.5_1_9:97782205-97782394:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	401.2620849609375	2	401.263271	800.511988	1.296	0.00052003	-4.2066	-0.001688	-2.9106	-0.0011679	401.26147123184654	136.26	1.7613	136.04	135.22	136.99	-0.22696					76	35	3	0	0	0	0.7327	1	13605	13605		8.8223	0.59103	1	533840	+		62962	26761	51924	51974	69081	69081					0.10375294111054245
VVGAPRGR	8	Unmodified	_VVGAPRGR_					0	0	0		nc|ENSG00000204120|Q6Y7W6-4|GIGYF2;nc|ENSG00000204120|Q6Y7W6-5|GIGYF2;ENSG00000204120|ENST00000373563|GIGYF2;nc|ENSG00000204120|Q6Y7W6-3|GIGYF2;GIGYF2|p.R396Hfs*77|1|0.02|ENSG00000204120|chr2:232791349-232791350|-/CATTC|frameshift_variant;ENST00000463554.5_1_2:233599907-233635753:+|nuORF	nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	nc|ENSG00000204120|Q6Y7W6-4|GIGYF2	MULTI-MSMS	OvCa9_classI_Rep2	2	406.24810791015625	2	406.248486	810.48242	0.12737	5.1745E-05	0.179	7.2718E-05	0.30637	0.00012446	406.2484453732125	140.19	2.0181	139.96	139.4	141.42	-0.22697					109	40	4	0	0	0	0.75991	1	14085	14085		21.702	0	1	304300			62963	8948	51925	51975	69082	69082					0.06959774885569914
VVGCTFVAVML	11	Carbamidomethyl (C)	_VVGC(Carbamidomethyl (C))TFVAVML_	VVGC(1)TFVAVML		VVGC(63)TFVAVML		0	1	0		PTCH2|p.D1064Efs*30|1|0.17|ENSG00000117425|chr1:44823308-44823309|-/CTTTGCCCCTCTGCCTTGCCGTT|frameshift_variant;nc|ENSG00000117425|Q9Y6C5-2|PTCH2;ENSG00000117425|ENST00000372192|PTCH2	PTCH2|p.D1064Efs*30|1|0.17|ENSG00000117425|chr1:44823308-44823309|-/CTTTGCCCCTCTGCCTTGCCGTT|frameshift_variant	PTCH2|p.D1064Efs*30|1|0.17|ENSG00000117425|chr1:44823308-44823309|-/CTTTGCCCCTCTGCCTTGCCGTT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	598.3151245117188	2	598.31432	1194.61409	1.4194	0.00084925	1.1166	0.00066805	2.536	0.0015173	598.315419282376	108.54	8.5813	107.34	106.85	115.43	-1.1978					384	169	6	0	0	0	0.37018	1	7885	7885		63.306	12.114	1	23942000			62964	3255	51926	51976	69083	69083	30				0.024564560761291432
VVGDRIGAQVL	11	Unmodified	_VVGDRIGAQVL_					0	0	0			REV__ENSG00000169710|ENST00000306749|FASN	REV__ENSG00000169710|ENST00000306749|FASN	MULTI-MSMS	OvCa9_classI_Rep4_	4	563.8328247070312	2	563.83258	1125.65061	0.49822	0.00028091	-1.1255	-0.0006346	-0.62729	-0.00035369	563.8318552434883	81.704	1.1631	79.021	78.718	79.881	-2.683					43	23	2	0	0	0	0.63561	1	6719	6719		41.427	1.5535	1	451380	+		62965	21477	51927	51977	69084	69084					0.09280792288700468
VVGGGGGG	8	Unmodified	_VVGGGGGG_					0	0	0		ENST00000352800.9_1_3:176782780-176915010:-|nuORF;ENST00000307790.7_3_22:30221719-30234222:-|nuORF	REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|355|3|anti-sense	REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|355|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.268798828125	1	559.283451	558.276175	1.5785	0.00088282	-1.1786	-0.00065916	0.3999	0.00022366	559.2795014717105	132.77	0.48026	132.77	132.36	132.84	0					11	9	2	0	0	0	0.028476	1	15416	15416		0	0	1	22837			62966	10258	51928	51978	69085	69085					-0.020632180135748968
VVGGGGGGG	9	Unmodified	_VVGGGGGGG_					0	0	0		ENST00000352800.9_1_3:176782780-176915010:-|nuORF;ENST00000307790.7_3_22:30221719-30234222:-|nuORF	REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|355|3|anti-sense	REV__HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|355|3|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	616.8215942382812	1	616.304915	615.297639	-0.65189	-0.00040176	-1.3605	-0.0008385	-2.0124	-0.0012403	616.3014914521627	145.03	0.52786	143.6	143.31	143.83	-1.4357					13	9	2	0	0	0	0.027462	1	14232	14232		21.702	0	1	10362			62967	10258	51929	51979	69086	69086					-0.025398329848485446
VVGIKSGVP	9	Unmodified	_VVGIKSGVP_					0	0	0		ENST00000006053.6_2_16:57418282-57418342:+|nuORF	ENST00000006053.6_2_16:57418282-57418342:+|nuORF	ENST00000006053.6_2_16:57418282-57418342:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	428.26861572265625	2	428.268553	854.522553	-1.0602	-0.00045404	1.3366	0.00057244	0.27646	0.0001184	428.2689736144851	56.503	1.4866	53.699	53.275	54.761	-2.804					91	29	4	0	0	0	0.36502	1	3987	3987		55.504	3.205	1	554390			62968	9624	51930	51980	69087	69087					0.08947276765479728
VVGKDLTV	8	Unmodified	_VVGKDLTV_					0	0	0		ENSG00000196976|ENST00000357360|LAGE3	ENSG00000196976|ENST00000357360|LAGE3	ENSG00000196976|ENST00000357360|LAGE3	MULTI-MSMS	OvCa9_classI_Rep4_	4	415.7540283203125	2	415.752736	829.490919	0.57314	0.00023828	-0.61886	-0.00025729	-0.045719	-1.9008E-05	415.7523867988264	67.006	1.9156	63.516	63.099	65.014	-3.4902					103	38	4	0	0	0	0.26545	4	4909	4889;4898;4909;4922		113.41	25.296	1	1816100			62969	8668	51931	51981	69088;69089;69090;69091	69090					0.06935284011512977
VVGKDLTV	8	Unmodified	_VVGKDLTV_					0	0	0		ENSG00000196976|ENST00000357360|LAGE3	ENSG00000196976|ENST00000357360|LAGE3	ENSG00000196976|ENST00000357360|LAGE3	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	415.752736	829.490919	1.1745	0.0004883	-1.0985	-0.0004567	0.075999	3.1597E-05	415.75224317514534	66.337	1.8353	63.641	63.121	64.956	-2.6958	0.06271	-0.00021674	NaN	113.41	65	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	443710			62970	8668	51931	51981							0.06935284011512977
VVGKIRSLH	9	Unmodified	_VVGKIRSLH_					0	0	0		ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	ENSG00000173517|ENST00000682557|PEAK1	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.3290100097656	2	504.819276	1007.624	-0.08854	-4.4697E-05	0.2276	0.0001149	0.13906	7.0198E-05	504.8192213700455	71.18	1.4577	68.503	67.845	69.302	-2.6764					41	28	2	0	0	0	0.027462	1	3385	3385		38.806	16.846	1	93031			62971	7384	51932	51982	69092	69092					0.12049148188032177
VVGLGWWD	8	Unmodified	_VVGLGWWD_					0	0	0			REV__nc|ENSG00000117020|Q9Y243-2|AKT3	REV__nc|ENSG00000117020|Q9Y243-2|AKT3	MULTI-MSMS	OvCa9_classI_Rep2	2	466.23687744140625	2	466.237253	930.459953	0.31116	0.00014507	-1.0157	-0.00047355	-0.70453	-0.00032848	466.23662450729495	43.901	2.5422	41.191	40.658	43.2	-2.7097					104	50	4	0	0	0	0.72134	1	2455	2455		39.021	0.21535	1	381230	+		62972	18333	51933	51983	69093	69093					-0.008058693027237496
VVGLLLTTT	9	Unmodified	_VVGLLLTTT_					0	0	0		ENST00000415986.5_1_X:101908183-101908641:+|nuORF	ENST00000415986.5_1_X:101908183-101908641:+|nuORF	ENST00000415986.5_1_X:101908183-101908641:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	458.7870788574219	2	458.789318	915.564084	-2.0925	-0.00096003	-0.91741	-0.0004209	-3.0099	-0.0013809	458.7887619770069	147.55	1.9467	147.32	146.82	148.77	-0.22697					104	38	4	0	0	0	0.65476	1	14930	14930		25.45	6.0902	1	613710			62973	11598	51934	51984	69094	69094					0.10292412734122536
VVGLVEWGGP	10	Unmodified	_VVGLVEWGGP_					0	0	0			REV__TYRO3|p.A273G|1|0.23|ENSG00000092445|chr15:41567394-41567394|C/G|missense_variant	REV__TYRO3|p.A273G|1|0.23|ENSG00000092445|chr15:41567394-41567394|C/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.82122802734375	2	506.776742	1011.53893	-1.0513	-0.00053276	-2.451	-0.0012421	-3.5022	-0.0017748	506.77552555088636	69.05	0.84731	66.43	66.018	66.865	-2.6203					40	16	3	0	0	0	0.027084	1	5514	5514		24.203	0	1	88868	+		62974	32741	51935	51985	69095	69095					0.033623579315758434
VVGNITLL	8	Unmodified	_VVGNITLL_					0	0	0		ENSG00000279270|ENST00000624978|OR52R1	ENSG00000279270|ENST00000624978|OR52R1	ENSG00000279270|ENST00000624978|OR52R1	MULTI-MSMS	OvCa9_classI_Rep2	2	414.7615966796875	2	414.763104	827.511654	-0.47497	-0.000197	-2.6059	-0.0010808	-3.0808	-0.0012778	414.761930419043	140.08	2.1671	139.86	139.4	141.57	-0.22696					123	43	4	0	0	0	0.73626	1	14084	14084		33.516	6.7195	1	474850			62975	9597	51936	51986	69096	69096					0.09099874391188223
VVGPIVHIEL	10	Unmodified	_VVGPIVHIEL_					0	0	0		tr|A0A553SRA1|A0A553SRA1_NIACISulfate/molybdateABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_00665PE=4SV=1	tr|A0A553SRA1|A0A553SRA1_NIACISulfate/molybdateABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_00665PE=4SV=1	tr|A0A553SRA1|A0A553SRA1_NIACISulfate/molybdateABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_00665PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	538.3265991210938	2	538.329142	1074.64373	-5.5921	-0.0030104	1.7538	0.0009441	-3.8384	-0.0020663	538.3299819955096	158.56	1.0599	158.33	158.09	159.15	-0.22697					66	21	5	0	0	0	0.7759	1	16120	16120		21.96	1.4781	1	327100			62976	34241	51937	51987	69097	69097					0.10939479408125408
VVGPSIVSLI	10	Unmodified	_VVGPSIVSLI_					0	0	0			REV__nc|ENSG00000183023|P32418-2|SLC8A1	REV__nc|ENSG00000183023|P32418-2|SLC8A1	MULTI-MSMS	OvCa99_classI_Rep5	1	492.31134033203125	2	492.310418	982.606283	0.25997	0.00012798	-0.34778	-0.00017121	-0.08781	-4.323E-05	492.3101267422759	161.92	0.66348	161.92	161.61	162.28	0					28	12	3	0	0	0	0.33376	1	18988	18988		76.774	0	1	66589	+		62977	22334	51938	51988	69098	69098					0.11428388142508084
VVGQSLII	8	Unmodified	_VVGQSLII_					0	0	0		sp|Q6SW67|GH_HCMVMEnvelopeglycoproteinHOS=Humancytomegalovirus(strainMerlin)OX=295027GN=gHPE=1SV=1;sp|P12824|GH_HCMVAEnvelopeglycoproteinHOS=Humancytomegalovirus(strainAD169)OX=10360GN=gHPE=1SV=1	sp|Q6SW67|GH_HCMVMEnvelopeglycoproteinHOS=Humancytomegalovirus(strainMerlin)OX=295027GN=gHPE=1SV=1	sp|Q6SW67|GH_HCMVMEnvelopeglycoproteinHOS=Humancytomegalovirus(strainMerlin)OX=295027GN=gHPE=1SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	414.76153564453125	2	414.763104	827.511654	-1.3763	-0.00057084	-1.7682	-0.00073337	-3.1445	-0.0013042	414.7623056204016	140.83	3.4972	139.8	137.66	141.16	-1.0339					138	70	4	0	0	0	0.73288	1	11675	11675		35.201	0	1	1080700			62978	32889	51939	51989	69099	69099					0.09099874391188223
VVGRARGR	8	Unmodified	_VVGRARGR_					0	0	0			REV__ENST00000449351.5_1_20:37075363-37077305:+|nuORF	REV__ENST00000449351.5_1_20:37075363-37077305:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.21221923828125	2	435.77266	869.530767	0.52222	0.00022757	-1.496	-0.00065191	-0.97376	-0.00042434	435.7734786612343	68.733	0.78816	65.243	65.014	65.802	-3.4902					22	15	2	0	0	0	0.028476	1	5108	5108		8.2313	0	1	14070	+		62979	25400	51940	51990	69100	69100					0.09078268525468047
VVGRVDQLL	9	Unmodified	_VVGRVDQLL_					0	0	0			REV__chr17:82050555-82050692|196|24.46|0.69|5.15|-|0|RFNG,None|1	REV__chr17:82050555-82050692|196|24.46|0.69|5.15|-|0|RFNG,None|1	MULTI-MSMS	OvCa99_classI_Rep5	1	499.8068542480469	2	499.803291	997.59203	1.6932	0.00084629	4.3113	0.0021548	6.0045	0.0030011	499.80518189386606	127.96	0.98236	127.96	127.72	128.7	0					35	20	3	0	0	0	0.40667	1	14822	14822		51.335	1.8939	1	152940	+		62980	15955	51941	51991	69101	69101					0.09313735714226823
VVGYLRIL	8	Unmodified	_VVGYLRIL_					0	0	0			REV__nc|ENSG00000061938|Q07912|TNK2	REV__nc|ENSG00000061938|Q07912|TNK2	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.7995300292969	2	466.80002	931.585488	-0.22234	-0.00010379	0.26069	0.00012169	0.038357	1.7905E-05	466.8000170196389	104.75	1.1173	102.63	102.38	103.49	-2.1192					51	21	3	0	0	0	0.68312	1	9484	9484		46.766	2.2354	1	198530	+		62981	16747	51942	51992	69102	69102					0.11695842553513103
VVGYLRIL	8	Unmodified	_VVGYLRIL_					0	0	0			REV__nc|ENSG00000061938|Q07912|TNK2	REV__nc|ENSG00000061938|Q07912|TNK2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	466.80002	931.585488	-0.9503	-0.0004436	0.92256	0.00043065	-0.027739	-1.2949E-05	466.8003106556375	103.19	1.3323	102.5	102.18	103.51	-0.68459	-0.085348	0.00066592	NaN	46.766	56	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197710	+		62982	16747	51942	51992							0.11695842553513103
VVGYLRIL	8	Unmodified	_VVGYLRIL_					0	0	0			REV__nc|ENSG00000061938|Q07912|TNK2	REV__nc|ENSG00000061938|Q07912|TNK2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	466.80002	931.585488	0.38175	0.0001782	-0.45984	-0.00021465	-0.078095	-3.6455E-05	466.7996894113911	104.06	1.1438	102.63	102.34	103.49	-1.4347	0.043419	-0.00062468	NaN	46.766	50	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	248600	+		62983	16747	51942	51992							0.11695842553513103
VVGYLRIL	8	Unmodified	_VVGYLRIL_					0	0	0			REV__nc|ENSG00000061938|Q07912|TNK2	REV__nc|ENSG00000061938|Q07912|TNK2	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	466.80002	931.585488	-0.22234	-0.00010379	0.26069	0.00012169	0.038357	1.7905E-05	466.8000170196389	104.75	1.1173	102.63	102.38	103.49	-2.1192	0.041929	4.8007E-05	NaN	46.766	51	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	198530	+		62984	16747	51942	51992							0.11695842553513103
VVHELRVSL	9	Unmodified	_VVHELRVSL_					0	0	0		nc|ENSG00000137094|O75953|DNAJB5;ENSG00000137094|ENST00000682809|DNAJB5;nc|ENSG00000137094|O75953-5|DNAJB5	nc|ENSG00000137094|O75953|DNAJB5	nc|ENSG00000137094|O75953|DNAJB5	MULTI-SECPEP	OvCa9_classI_Rep3	3	526.3414306640625	2	526.316566	1050.61858	-1.6701	-0.00087899	0.63332	0.00033333	-1.0367	-0.00054566	526.316723713381	85.744	2.0121	83.524	83.134	85.146	-2.2204					108	39	5	0	0	0	0.027447	1	5239	5239		31.53	0	1	704810			62985	4555	51943	51993	69103	69103					0.09529424605580061
VVHGKVLQH	9	Unmodified	_VVHGKVLQH_					0	0	0		ENST00000539759.5_1_11:47639025-47663996:-|nuORF;MTCH2|p.G188Nfs*7|1|0.1|ENSG00000109919|chr11:47629024-47629025|-/ATTCACTACCTTTGTT|frameshift_variant;ENSG00000109919|ENST00000302503|MTCH2	ENST00000539759.5_1_11:47639025-47663996:-|nuORF	ENST00000539759.5_1_11:47639025-47663996:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.8031005859375	2	508.803626	1015.5927	-0.34238	-0.0001742	0.30459	0.00015498	-0.037785	-1.9225E-05	508.8036315522624	22.043	1.1992	20.704	20.473	21.672	-1.3386					60	27	3	0	0	0	0.46377	2	249	236;249		45.952	13.997	1	236460			62986	13443	51944	51994	69104;69105	69105					0.08552575153930775
VVHNDRFGAI	10	Unmodified	_VVHNDRFGAI_					0	0	0		tr|A0A553SP35|A0A553SP35_NIACIL-serinedeaminaseOS=NialliacirculansOX=1397GN=sdaABPE=3SV=1	tr|A0A553SP35|A0A553SP35_NIACIL-serinedeaminaseOS=NialliacirculansOX=1397GN=sdaABPE=3SV=1	tr|A0A553SP35|A0A553SP35_NIACIL-serinedeaminaseOS=NialliacirculansOX=1397GN=sdaABPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	564.3019409179688	2	564.301447	1126.58834	2.1679	0.0012233	-1.1284	-0.00063677	1.0395	0.00058657	564.3005422942158	126.38	0.78378	126.38	126.09	126.87	0					38	16	3	0	0	0	0.52321	1	14638	14638		51.335	4.8787	1	390500			62987	34000	51945	51995	69106	69106					0.030110659403817408
VVHTLALRL	9	Unmodified	_VVHTLALRL_					0	0	0			REV__ENST00000328914.4_1_7:4804488-4804725:+|nuORF	REV__ENST00000328914.4_1_7:4804488-4804725:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.3277587890625	2	511.329476	1020.6444	-4.4323	-0.0022664	-0.073534	-3.76E-05	-4.5058	-0.002304	511.3293417529648	154.42	1.6613	152.97	152.67	154.33	-1.4516					104	42	5	0	0	0	0.6653	2	15311	15311;15381		24.203	7.1531	1	1662600	+		62988	24515	51946	51996	69107;69108	69107					0.13490318847846083
VVHVEVYI	8	Unmodified	_VVHVEVYI_					0	0	0		ENSG00000150269|ENST00000279791|OR5M9	ENSG00000150269|ENST00000279791|OR5M9	ENSG00000150269|ENST00000279791|OR5M9	MULTI-MSMS	OvCa9_classI_Rep2	2	479.2720642089844	2	479.273835	956.533118	-4.2096	-0.0020176	-0.49923	-0.00023927	-4.7088	-0.0022568	479.2735553092833	154.4	0.73885	154.17	153.96	154.7	-0.22696					21	15	2	0	0	0	0.75724	1	15737	15737		23.037	5.6717	1	32049			62989	5502	51947	51997	69109	69109					0.05311259419897851
VVIAELLQE	9	Unmodified	_VVIAELLQE_					0	0	0			REV__nc|ENSG00000163939|Q86U86-6|PBRM1	REV__nc|ENSG00000163939|Q86U86-6|PBRM1	MULTI-MSMS	OvCa9_classI_Rep2	2	508.3052673339844	2	507.297507	1012.58046	0.22454	0.00011391	0.28013	0.00014211	0.50467	0.00025602	507.2956796701824	30.801	1.0836	28.091	27.656	28.74	-2.7097					58	21	5	0	0	0	0.69895	1	865	865		18.324	0.062328	1	97785	+		62990	20916	51948	51998	69110	69110					0.07467493900242061
VVIEYNKYSG	10	Unmodified	_VVIEYNKYSG_					0	0	0			REV__tr|A0A7D6VXW2|A0A7D6VXW2_9CLOTIronhydrogenasesmallsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_14260PE=4SV=1	REV__tr|A0A7D6VXW2|A0A7D6VXW2_9CLOTIronhydrogenasesmallsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_14260PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.2894287109375	2	586.303321	1170.59209	0.65055	0.00038142	1.1619	0.00068124	1.8125	0.0010627	586.3038964791158	158.46	0.69286	158.46	158.15	158.84	0					29	14	3	0	0	0	0.027088	1	18609	18609		19.997	0	1	181580	+		62991	31793	51949	51999	69111	69111					0.013616909235679486
VVIIKRIT	8	Unmodified	_VVIIKRIT_					0	0	0			REV__ENST00000423695.6_1_5:10250480-10261980:+|nuORF	REV__ENST00000423695.6_1_5:10250480-10261980:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.3092041015625	2	471.328945	940.643337	-0.31972	-0.00015069	-3.0638	-0.0014441	-3.3835	-0.0015948	471.3275971576813	24.361	0.29819	24.361	24.237	24.536	0					9	5	2	0	0	0	0.028476	1	454	454		5.9211	0	1	31461	+		62992	25634	51950	52000	69112	69112					0.17064104478913578
VVIKASKG	8	Unmodified	_VVIKASKG_					0	0	0			REV__ENST00000475375.1_1_13:53010343-53024741:-|nuORF	REV__ENST00000475375.1_1_13:53010343-53024741:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	401.2619323730469	2	401.263271	800.511988	1.296	0.00052003	-4.2066	-0.001688	-2.9106	-0.0011679	401.26147123184654	136.26	1.7613	136.04	135.22	136.99	-0.22696					76	35	3	0	0	0	0.75661	1	13558	13558		19.36	1.995	1	533840	+		62993	19358	51951	52001	69113	69113					0.10375294111042876
VVIKKRSNI	9	Unmodified	_VVIKKRSNI_					0	0	0			REV__tr|A0A7D6VS87|A0A7D6VS87_9CLOTPhosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_15085PE=3SV=1	REV__tr|A0A7D6VS87|A0A7D6VS87_9CLOTPhosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_15085PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	528.8518676757812	2	528.848033	1055.68151	2.0513	0.0010848	4.1867	0.0022141	6.2379	0.0032989	528.8500831761676	107.38	0.62969	107.38	107.14	107.77	0					32	14	3	0	0	0	0.13482	1	12112	12112		87.754	8.3033	1	2041500	+		62994	31478	51952	52002	69114	69114					0.1558999039361879
VVILPQNV	8	Unmodified	_VVILPQNV_					0	0	0		ENSG00000136878|ENST00000372429|USP20	ENSG00000136878|ENST00000372429|USP20	ENSG00000136878|ENST00000372429|USP20	MULTI-SECPEP	OvCa99_classI_Rep5	1	440.72271728515625	2	441.276378	880.538203	3.9411	0.0017391	-1.1584	-0.00051119	2.7827	0.0012279	441.2756099520591	99.256	0.41064	99.256	99.036	99.447	0					18	9	3	0	0	0	0.028476	1	10943	10943		3.9852	0	1	363040			62995	4527	51953	52003	69115	69115					0.09315563282518724
VVILPQNV	8	Unmodified	_VVILPQNV_					0	0	0		ENSG00000136878|ENST00000372429|USP20	ENSG00000136878|ENST00000372429|USP20	ENSG00000136878|ENST00000372429|USP20	MULTI-MATCH	OvCa9_classI_Rep2	2		2	441.276378	880.538203	0.41361	0.00018252	-0.29228	-0.00012897	0.12133	5.3542E-05	441.27574683642706	100.24	0.64418	99.412	99.113	99.757	-0.83051	0.07806	0.0003783	NaN	1.2052	21	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14079			62996	4527	51953	52003							0.09315563282518724
VVILSSRVI	9	Unmodified	_VVILSSRVI_					0	0	0			REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1	REV__nc|ENSG00000147255|Q8N6C5-2|IGSF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.32379150390625	2	493.32386	984.633166	0.2425	0.00011963	-1.1229	-0.00055394	-0.88037	-0.00043431	493.3231302299978	116.17	1.6901	114.8	114.5	116.19	-1.3645					62	32	3	0	0	0	0.40667	1	10858	10858		51.335	8.9393	1	214860	+		62997	16132	51954	52004	69116	69116					0.14023496753691234
VVIPNGVGVV	10	Unmodified	_VVIPNGVGVV_					0	0	0		tr|A0A7D6ZVF4|A0A7D6ZVF4_9CLOTNickel-dependentlactateracemaseOS=ClostridiumintestinaleOX=36845GN=larAPE=4SV=1	tr|A0A7D6ZVF4|A0A7D6ZVF4_9CLOTNickel-dependentlactateracemaseOS=ClostridiumintestinaleOX=36845GN=larAPE=4SV=1	tr|A0A7D6ZVF4|A0A7D6ZVF4_9CLOTNickel-dependentlactateracemaseOS=ClostridiumintestinaleOX=36845GN=larAPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	476.79473876953125	2	476.794935	951.575317	-0.041831	-1.9945E-05	-0.26291	-0.00012536	-0.30474	-0.0001453	476.7946913581807	110.41	1.5792	110.23	109.96	111.54	-0.17237					69	31	3	0	0	0	0.69986	1	10384	10384		30.504	0	1	711390			62998	35803	51955	52005	69117	69117					0.09759234828288754
VVIQEEELELA	11	Unmodified	_VVIQEEELELA_					0	0	0		ENSG00000176208|ENST00000321990|ATAD5;nc|ENSG00000176208|Q96QE3-2|ATAD5;ENSG00000176208.9,ATAD5,chr17,+,I17.1,30878097,30879422|79|5.02|7|intron	ENSG00000176208|ENST00000321990|ATAD5	ENSG00000176208|ENST00000321990|ATAD5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	424.9117431640625	3	424.562493	1270.66565	-0.058356	-2.4776E-05	3.8219	0.0016226	3.7635	0.0015979	424.5639780107269	66.663	1.1829	63.173	62.805	63.988	-3.4902					55	23	3	0	0	0	0.025668	1	4852	4852		42.338	4.8299	1	207480			62999	7591	51956	52006	69118	69118					0.041141945753679465
VVIRGNSILM	10	Unmodified	_VVIRGNSILM_					0	0	0		ENST00000456003.1_1_10:13146577-13146709:-|nuORF	ENST00000456003.1_1_10:13146577-13146709:-|nuORF	ENST00000456003.1_1_10:13146577-13146709:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	551.3292846679688	2	551.326076	1100.6376	1.614	0.00088984	0.16705	9.2099E-05	1.781	0.00098193	551.326104797583	92.574	0.79523	92.574	92.008	92.803	0					35	18	2	0	0	0	0.48398	1	10003	10003		56.434	0	1	2522400			63000	12104	51957	52007	69119	69119					0.09130637904945615
VVIRGNSILML	11	Unmodified	_VVIRGNSILML_					0	0	0		ENST00000456003.1_1_10:13146577-13146709:-|nuORF	ENST00000456003.1_1_10:13146577-13146709:-|nuORF	ENST00000456003.1_1_10:13146577-13146709:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	607.8698120117188	2	607.868108	1213.72166	0.51993	0.00031605	1.5526	0.0009438	2.0726	0.0012598	607.8690066923475	114.31	1.2876	114.31	114.06	115.35	0					89	27	4	0	0	0	0.10496	3	13064	13034;13040;13064		96.034	0	1	8458200			63001	12104	51958	52008	69120;69121;69122	69122					0.12335169001858048
VVISKVGAPYG	11	Unmodified	_VVISKVGAPYG_					0	0	0			REV__TLE6|p.D422A|1|0.16|ENSG00000104953|chr19:2991863-2991863|A/C|missense_variant	REV__TLE6|p.D422A|1|0.16|ENSG00000104953|chr19:2991863-2991863|A/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3162231445312	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.70148	1	14405	14405		29.15	6.1071	1	202430	+		63002	29510	51959	52009	69123	69123					0.08222889028479585
VVITVPEVM	9	Unmodified	_VVITVPEVM_					0	0	0		ENSG00000198650|ENST00000355962|TAT	ENSG00000198650|ENST00000355962|TAT	ENSG00000198650|ENST00000355962|TAT	MULTI-SECPEP	OvCa9_classI_Rep2	2	492.8001708984375	2	493.783179	985.551804	-0.18915	-9.3402E-05	-4.2825	-0.0021146	-4.4716	-0.002208	493.7802084793718	60.108	0.31492	57.338	57.186	57.501	-2.7702					8	5	2	0	0	0	0.027462	1	4401	4401		24.203	4.8428	1	12227			63003	8843	51960	52010	69124	69124					0.05845052999438849
VVIVNPETK	9	Unmodified	_VVIVNPETK_					0	0	0		ENSG00000066084|ENST00000301180|DIP2B	ENSG00000066084|ENST00000301180|DIP2B	ENSG00000066084|ENST00000301180|DIP2B	MULTI-MSMS	OvCa9_classI_Rep2	2	499.7965393066406	2	499.797675	997.580796	1.2387	0.00061911	-4.4901	-0.0022442	-3.2514	-0.001625	499.7951854889041	28.84	1.0646	26.13	25.716	26.781	-2.7097					46	22	4	0	0	0	0.63422	1	658	658		27.882	2.3082	1	100180			63004	1343	51961	52011	69125	69125					0.08190913620092033
VVKCLLPI	8	Unmodified	_VVKCLLPI_					0	0	0		ENST00000527217.1_1_11:93343186-93343498:-|nuORF	ENST00000527217.1_1_11:93343186-93343498:-|nuORF	ENST00000527217.1_1_11:93343186-93343498:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	442.2671813964844	2	442.785524	883.556496	0.29675	0.0001314	2.8713	0.0012714	3.1681	0.0014028	442.78680623501356	59.541	0.34896	59.541	59.377	59.726	0					13	8	2	0	0	0	0.028476	1	5158	5158		35.201	1.6851	1	214210			63005	13229	51962	52012	69126	69126					0.11005981932873965
VVKEEKIHFI	10	Unmodified	_VVKEEKIHFI_					0	0	0			REV__tr|A0A7D6VQW0|A0A7D6VQW0_9CLOTGlutamyl-tRNAreductaseOS=ClostridiumintestinaleOX=36845GN=hemAPE=3SV=1	REV__tr|A0A7D6VQW0|A0A7D6VQW0_9CLOTGlutamyl-tRNAreductaseOS=ClostridiumintestinaleOX=36845GN=hemAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	621.39208984375	2	621.366256	1240.71796	-0.64819	-0.00040276	-1.5161	-0.00094207	-2.1643	-0.0013448	621.3644960116189	106.21	0.60988	104.19	103.95	104.56	-2.0161					21	11	3	0	0	0	0.026994	1	9689	9689		32.812	2.4947	1	47561	+		63006	31362	51963	52013	69127	69127					0.10722822499656104
VVKEEKIHFI	10	Unmodified	_VVKEEKIHFI_					0	0	0			REV__tr|A0A7D6VQW0|A0A7D6VQW0_9CLOTGlutamyl-tRNAreductaseOS=ClostridiumintestinaleOX=36845GN=hemAPE=3SV=1	REV__tr|A0A7D6VQW0|A0A7D6VQW0_9CLOTGlutamyl-tRNAreductaseOS=ClostridiumintestinaleOX=36845GN=hemAPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	621.366256	1240.71796	-1.1872	-0.00073767	-1.6214	-0.0010075	-2.8086	-0.0017452	621.365262709911	104.59	0.79135	104.01	103.62	104.41	-0.57639	-0.13735	0.0015587	NaN	32.812	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37825	+		63007	31362	51963	52013							0.10722822499656104
VVKEEKIHFI	10	Unmodified	_VVKEEKIHFI_					0	0	0			REV__tr|A0A7D6VQW0|A0A7D6VQW0_9CLOTGlutamyl-tRNAreductaseOS=ClostridiumintestinaleOX=36845GN=hemAPE=3SV=1	REV__tr|A0A7D6VQW0|A0A7D6VQW0_9CLOTGlutamyl-tRNAreductaseOS=ClostridiumintestinaleOX=36845GN=hemAPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	621.366256	1240.71796	1.3465	0.00083666	-5.14	-0.0031938	-3.7935	-0.0023572	621.3627831913358	105.6	1.0928	104.25	103.83	104.93	-1.3482	0.097801	-0.002814	NaN	32.812	34	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36520	+		63008	31362	51963	52013							0.10722822499656104
VVKEQLPA	8	Unmodified	_VVKEQLPA_					0	0	0			REV__ENSG00000006831|ENST00000357103|ADIPOR2	REV__ENSG00000006831|ENST00000357103|ADIPOR2	MULTI-MSMS	OvCa99_classI_Rep5	1	442.2674255371094	2	442.26601	882.517468	0.40326	0.00017835	-0.67284	-0.00029757	-0.26958	-0.00011923	442.2655579068143	59.582	1.9739	59.582	59.011	60.984	0					105	49	4	0	0	0	0.70469	1	5101	5101		42.396	0	1	6942800	+		63009	16426	51964	52014	69128	69128					0.07150972902843478
VVKFIDTLKD	10	Unmodified	_VVKFIDTLKD_					0	0	0		tr|A0A7D7A118|A0A7D7A118_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13565PE=4SV=1	tr|A0A7D7A118|A0A7D7A118_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13565PE=4SV=1	tr|A0A7D7A118|A0A7D7A118_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13565PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	589.3409423828125	2	589.344989	1176.67542	-3.0463	-0.0017953	-0.38122	-0.00022467	-3.4276	-0.00202	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.75313	1	14796	14796		24.519	1.9395	1	272220			63010	36019	51965	52015	69129	69129					0.09415427371413898
VVKGEKDLKPV	11	Unmodified	_VVKGEKDLKPV_					0	0	0			REV__ENSG00000167522|ENST00000301030|ANKRD11	REV__ENSG00000167522|ENST00000301030|ANKRD11	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3688354492188	2	606.371538	1210.72852	-0.26856	-0.00016285	-2.8049	-0.0017008	-3.0734	-0.0018636	606.369699493104	145.24	3.8933	143.8	141.64	145.53	-1.4357					226	74	4	0	0	0	0.69455	1	14305	14305		31.53	0	1	336140	+		63011	21284	51966	52016	69130	69130					0.13158805154057518
VVKGEKPV	8	Unmodified	_VVKGEKPV_					0	0	0			REV__ENST00000502424.1_1_5:14797477-14798464:-|nuORF	REV__ENST00000502424.1_1_5:14797477-14798464:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	428.2683410644531	2	428.268553	854.522553	-1.0602	-0.00045404	1.3366	0.00057244	0.27646	0.0001184	428.2689736144851	56.503	1.4866	53.699	53.275	54.761	-2.804					91	29	4	0	0	0	0.59904	1	3993	3993		64.207	7.4862	1	554390	+		63012	20742	51967	52017	69131	69131					0.0894727676546836
VVKGRRGG	8	Unmodified	_VVKGRRGG_					0	0	0			REV__ENST00000392900.3_1_7:143551228-143582358:-|nuORF	REV__ENST00000392900.3_1_7:143551228-143582358:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	414.7615966796875	2	414.761761	827.508969	-0.47497	-0.000197	0.63133	0.00026185	0.15636	6.4852E-05	414.761930419043	140.08	2.1671	139.86	139.4	141.57	-0.22696					123	43	4	0	0	0	0.73288	8	14030	13988;14000;14012;14030;14036;14042;14054;14112		35.201	8.4046	1	474850	+		63013	23018	51968	52018	69132;69133;69134;69135;69136;69137;69138;69139	69135					0.08831463776903092
VVKGRRGG	8	Unmodified	_VVKGRRGG_					0	0	0			REV__ENST00000392900.3_1_7:143551228-143582358:-|nuORF	REV__ENST00000392900.3_1_7:143551228-143582358:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	414.7613830566406	2	414.761761	827.508969	-1.3763	-0.00057084	1.469	0.0006093	0.092716	3.8455E-05	414.7623056204016	140.83	3.4972	139.8	137.66	141.16	-1.0339					138	70	4	0	0	0	0.72922	3	11621	11597;11621;11633		37.028	10.232	1	1080700	+		63014	23018	51968	52018	69140;69141;69142	69141					0.08831463776903092
VVKGRRGG	8	Unmodified	_VVKGRRGG_					0	0	0			REV__ENST00000392900.3_1_7:143551228-143582358:-|nuORF	REV__ENST00000392900.3_1_7:143551228-143582358:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.7623291015625	2	414.761761	827.508969	0.81	0.00033596	-0.80556	-0.00033412	0.0044425	1.8426E-06	414.7613377091018	141.2	2.8207	139.74	138.79	141.61	-1.4627					131	54	4	0	0	0	0.74679	3	13794	13794;13817;13853		28.254	1.4582	1	1536400	+		63015	23018	51968	52018	69143;69144;69145	69143					0.08831463776903092
VVKGVLTD	8	Unmodified	_VVKGVLTD_					0	0	0		nc|ENSG00000132321|Q86XH1-5|IQCA1;ENSG00000132321|ENST00000409907|IQCA1;ENST00000479783.1_1_2:237233333-237240271:-|nuORF	nc|ENSG00000132321|Q86XH1-5|IQCA1	nc|ENSG00000132321|Q86XH1-5|IQCA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	415.75384521484375	2	415.752736	829.490919	0.57314	0.00023828	-0.61886	-0.00025729	-0.045719	-1.9008E-05	415.7523867988264	67.006	1.9156	63.516	63.099	65.014	-3.4902					103	38	4	0	0	0	0.39692	1	4935	4935		88.643	17.265	1	1816100			63016	4126	51969	52019	69146	69146					0.06935284011501608
VVKKDYKKA	9	Unmodified	_VVKKDYKKA_					0	0	0		tr|A0A7D6W0Y9|A0A7D6W0Y9_9CLOTSEL1-likerepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01290PE=4SV=1	tr|A0A7D6W0Y9|A0A7D6W0Y9_9CLOTSEL1-likerepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01290PE=4SV=1	tr|A0A7D6W0Y9|A0A7D6W0Y9_9CLOTSEL1-likerepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01290PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	539.8317260742188	2	539.834591	1077.65463	-3.7173	-0.0020067	-0.65874	-0.00035561	-4.3761	-0.0023624	539.83416939196	149.54	1.4287	149.32	148.92	150.35	-0.22697					60	28	3	0	0	0	0.68424	1	15156	15156		21.96	0	1	108190			63017	35394	51970	52020	69147	69147					0.11890881782414908
VVKKRESL	8	Unmodified	_VVKKRESL_					0	0	0		tr|A0A553SFX6|A0A553SFX6_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_09715PE=3SV=1	tr|A0A553SFX6|A0A553SFX6_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_09715PE=3SV=1	tr|A0A553SFX6|A0A553SFX6_NIACIMethyl-acceptingchemotaxisproteinOS=NialliacirculansOX=1397GN=CEQ21_09715PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	479.28955078125	2	479.805834	957.597115	0.61962	0.0002973	-0.98679	-0.00047347	-0.36717	-0.00017617	479.80523355436304	42.534	0.64126	39.824	39.621	40.262	-2.7097					19	12	2	0	0	0	0.028476	1	2337	2337		42.396	6.7778	1	32292			63018	33089	51971	52021	69148	69148					0.11662039576845018
VVKLGKSA	8	Unmodified	_VVKLGKSA_					0	0	0		nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1;ENST00000462818.1_1_3:136219063-136323180:-|nuORF	nc|ENSG00000118007|Q8WVM7-2|STAG1	nc|ENSG00000118007|Q8WVM7-2|STAG1	MULTI-MSMS	OvCa9_classI_Rep2	2	401.2622375488281	2	401.263271	800.511988	1.296	0.00052003	-4.2066	-0.001688	-2.9106	-0.0011679	401.26147123184654	136.26	1.7613	136.04	135.22	136.99	-0.22696					76	35	3	0	0	0	0.74209	3	13581	13581;13599;13610		12.959	4.7279	1	533840			63019	3285	51972	52022	69149;69150;69151	69149					0.10375294111042876
VVKLGKSA	8	Unmodified	_VVKLGKSA_					0	0	0		nc|ENSG00000118007|Q8WVM7-2|STAG1;ENSG00000118007|ENST00000383202|STAG1;ENST00000462818.1_1_3:136219063-136323180:-|nuORF	nc|ENSG00000118007|Q8WVM7-2|STAG1	nc|ENSG00000118007|Q8WVM7-2|STAG1	MULTI-MSMS	OvCa9_classI_Rep3	3	401.2622985839844	2	401.263271	800.511988	-0.21441	-8.6037E-05	-2.9352	-0.0011778	-3.1496	-0.0012638	401.26203375308216	137.05	1.2653	135.96	135.51	136.78	-1.0858					61	25	3	0	0	0	0.74394	1	11145	11145		13.775	0.81615	1	224680			63020	3285	51972	52022	69152	69152					0.10375294111042876
VVKLNIIESY	10	Unmodified	_VVKLNIIESY_					0	0	0			REV__ENSG00000218819|ENST00000405799|TDRD15	REV__ENSG00000218819|ENST00000405799|TDRD15	MULTI-MSMS	OvCa9_classI_Rep3	3	589.342041015625	2	589.344989	1176.67542	-5.1334	-0.0030254	1.6192	0.00095427	-3.5142	-0.0020711	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.69073	1	12420	12420		31.53	0	1	589610	+		63021	23329	51973	52023	69153	69153					0.09415427371436635
VVKLRNAGH	9	Unmodified	_VVKLRNAGH_					0	0	0		ENSG00000248487|ENST00000273596|ABHD14A;ABHD14A|p.H239L|1|0.34|ENSG00000248487|chr3:51980918-51980918|A/T|missense_variant	ENSG00000248487|ENST00000273596|ABHD14A	ENSG00000248487|ENST00000273596|ABHD14A	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.2711181640625	2	497.30125	992.587947	-0.31256	-0.00015543	2.2913	0.0011395	1.9787	0.00098402	497.30272527217113	35.684	0.18655	35.684	35.566	35.753	0					5	3	2	0	0	0	0.027462	1	1816	1816		38.806	1.647	1	21098			63022	9408	51974	52024	69154	69154					0.0913569101118128
VVKLSEIVTLA	11	Unmodified	_VVKLSEIVTLA_					0	0	0		ENSG00000136143|ENST00000646932|SUCLA2;nc|ENSG00000136143|Q9P2R7-2|SUCLA2	ENSG00000136143|ENST00000646932|SUCLA2	ENSG00000136143|ENST00000646932|SUCLA2	MULTI-MSMS	OvCa99_classI_Rep5	1	586.3671264648438	2	586.368464	1170.72238	-0.2873	-0.00016847	-1.7811	-0.0010444	-2.0684	-0.0012129	586.3671648836445	22.556	0.31934	22.556	22.381	22.7	0					12	6	2	0	0	0	0.60323	1	225	225		44.377	0	1	51445			63023	4461	51975	52025	69155	69155					0.14384286922586398
VVKLVDFGVSA	11	Unmodified	_VVKLVDFGVSA_					0	0	0		TNIK|p.E166V|1|0.18|ENSG00000154310|chr3:171190708-171190708|T/A|missense_variant	TNIK|p.E166V|1|0.18|ENSG00000154310|chr3:171190708-171190708|T/A|missense_variant	TNIK|p.E166V|1|0.18|ENSG00000154310|chr3:171190708-171190708|T/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3284301757812	2	567.331882	1132.64921	-2.6412	-0.0014984	-1.2123	-0.00068778	-3.8535	-0.0021862	567.3310908608092	141.92	3.9983	140.91	138.91	142.91	-1.0106					224	80	5	0	0	0	0.71498	1	11780	11780		24.519	3.5723	1	127690			63024	32970	51976	52026	69156	69156					0.0881915819995811
VVKMPSGEF	9	Unmodified	_VVKMPSGEF_					0	0	0		ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	ENSG00000132646|ENST00000379143|PCNA	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.2711181640625	2	497.257328	992.500103	-0.33287	-0.00016552	-2.0324	-0.0010106	-2.3653	-0.0011761	497.25603454840774	35.684	0.41821	35.684	35.566	35.984	0					10	8	2	0	0	0	0.027448	1	1816	1816		53.351	14.545	1	16974			63025	4156	51977	52027	69157	69157					0.0035530930554159568
VVKNTLVLTY	10	Unmodified	_VVKNTLVLTY_					0	0	0			REV__nc|ENSG00000273085|Q8NGJ3|OR52E1	REV__nc|ENSG00000273085|Q8NGJ3|OR52E1	MULTI-MSMS	OvCa99_classI_Rep5	1	575.346435546875	2	575.347532	1148.68051	0.41999	0.00024164	-2.5594	-0.0014725	-2.1394	-0.0012309	575.345898604362	159.91	1.5859	159.91	159.52	161.11	0					89	31	5	0	0	0	0.65849	1	18775	18775		35.152	8.4591	1	1545400	+		63026	29191	51978	52028	69158	69158					0.1121173123403878
VVKPKSPE	8	Unmodified	_VVKPKSPE_					0	0	0		nc|ENSG00000064042|Q9UPQ0-9|LIMCH1;nc|ENSG00000064042|Q9UPQ0-8|LIMCH1;nc|ENSG00000064042|Q9UPQ0-6|LIMCH1;nc|ENSG00000064042|Q9UPQ0-5|LIMCH1;nc|ENSG00000064042|Q9UPQ0-10|LIMCH1;nc|ENSG00000064042|Q9UPQ0-2|LIMCH1;nc|ENSG00000064042|Q9UPQ0-4|LIMCH1;nc|ENSG00000064042|Q9UPQ0|LIMCH1;nc|ENSG00000064042|Q9UPQ0-3|LIMCH1;ENSG00000064042|ENST00000503057|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	nc|ENSG00000064042|Q9UPQ0-9|LIMCH1	MULTI-MSMS	OvCa9_classI_Rep4_	4	442.2666015625	2	442.26601	882.517468	-0.55069	-0.00024355	0.38544	0.00017047	-0.16526	-7.3087E-05	442.26593561826763	62.879	2.7177	59.421	58.57	61.288	-3.4577					114	55	4	0	0	0	0.66057	1	4408	4408		51.335	0	1	936690			63027	1292	51979	52029	69159	69159					0.07150972902843478
VVKPPGSSL	9	Unmodified	_VVKPPGSSL_					0	0	0		BAP1|p.E600Gfs*17|1|0.13|ENSG00000163930|chr3:52403229-52403229|T/-|frameshift_variant;ENSG00000163930|ENST00000460680|BAP1	BAP1|p.E600Gfs*17|1|0.13|ENSG00000163930|chr3:52403229-52403229|T/-|frameshift_variant	BAP1|p.E600Gfs*17|1|0.13|ENSG00000163930|chr3:52403229-52403229|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	442.267578125	2	442.26601	882.517468	0.40326	0.00017835	-0.67284	-0.00029757	-0.26958	-0.00011923	442.2655579068143	59.582	1.9739	59.582	59.011	60.984	0					105	49	4	0	0	0	0.22621	1	5129	5129		71.877	5.4482	1	6942800			63028	144	51980	52030	69160	69160					0.07150972902854846
VVKPPGSSL	9	Unmodified	_VVKPPGSSL_					0	0	0		BAP1|p.E600Gfs*17|1|0.13|ENSG00000163930|chr3:52403229-52403229|T/-|frameshift_variant;ENSG00000163930|ENST00000460680|BAP1	BAP1|p.E600Gfs*17|1|0.13|ENSG00000163930|chr3:52403229-52403229|T/-|frameshift_variant	BAP1|p.E600Gfs*17|1|0.13|ENSG00000163930|chr3:52403229-52403229|T/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	442.26601	882.517468	-0.1272	-5.6258E-05	0.60236	0.00026641	0.47516	0.00021015	442.2660230278863	62.103	1.7371	59.343	58.568	60.305	-2.7593	-0.10532	0.00057595	NaN	71.877	78	33	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166180			63029	144	51980	52030							0.07150972902854846
VVKPPVEP	8	Unmodified	_VVKPPVEP_					0	0	0			REV__tr|A0A7D6W1J6|A0A7D6W1J6_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02985PE=4SV=1	REV__tr|A0A7D6W1J6|A0A7D6W1J6_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02985PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	431.78045654296875	2	432.763104	863.511654	-0.033681	-1.4576E-05	0.41357	0.00017898	0.37989	0.0001644	432.7631275618631	54.401	0.85097	54.401	54.214	55.064	0					27	19	2	0	0	0	0.028476	1	4376	4376		19.36	11.67	1	402230	+		63030	31883	51981	52031	69161	69161					0.07443874391185545
VVKQADVVL	9	Unmodified	_VVKQADVVL_					0	0	0		ENST00000476372.1_1_11:293373-294746:+|nuORF;ENST00000474221.5_1_11:293333-294746:+|nuORF;ENSG00000142102|ENST00000409548|PGGHG	ENST00000476372.1_1_11:293373-294746:+|nuORF;ENSG00000142102|ENST00000409548|PGGHG	ENSG00000142102|ENST00000409548|PGGHG	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.289306640625	2	485.800217	969.585882	-1.1679	-0.00056737	0.51978	0.00025251	-0.64813	-0.00031486	485.80040649504895	95.482	2.9713	93.586	92.358	95.329	-1.8956					92	58	3	0	0	0	0.027426	1	6292	6292		66.429	18.772	1	346120			63031	12466;4954	51982	52032	69162	69162					0.09987217482705546
VVKRQKGKHD	10	Unmodified	_VVKRQKGKHD_					0	0	0			REV__ENSG00000188729|ENST00000682035|OSTN	REV__ENSG00000188729|ENST00000682035|OSTN	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8565673828125	2	597.856921	1193.69929	-2.4902	-0.0014888	1.4044	0.0008396	-1.0859	-0.00064919	597.8575960796461	144.35	4.0594	144.12	142.06	146.12	-0.22696					210	81	4	0	0	0	0.73378	1	14537	14537		26.693	4.733	1	136500	+		63032	22730	51983	52033	69163	69163					0.11018705648439209
VVKSGIYWLT	10	Unmodified	_VVKSGIYWLT_					0	0	0		ENST00000375856.4_1_13:110407955-110408252:-|nuORF	ENST00000375856.4_1_13:110407955-110408252:-|nuORF	ENST00000375856.4_1_13:110407955-110408252:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.3071899414062	2	583.334424	1164.6543	0.76685	0.00044733	1.1841	0.00069071	1.9509	0.001138	583.3351050600103	124.41	0.59901	124.41	124.19	124.79	0					27	12	3	0	0	0	0.026802	1	14345	14345		42.396	25.031	1	249860			63033	11061	51984	52034	69164	69164					0.07855462062548213
VVKTKGYLS	9	Unmodified	_VVKTKGYLS_					0	0	0		tr|A0A7D7A0U0|A0A7D7A0U0_9CLOTArseniteeffluxtransportermetallochaperoneArsDOS=ClostridiumintestinaleOX=36845GN=arsDPE=4SV=1	tr|A0A7D7A0U0|A0A7D7A0U0_9CLOTArseniteeffluxtransportermetallochaperoneArsDOS=ClostridiumintestinaleOX=36845GN=arsDPE=4SV=1	tr|A0A7D7A0U0|A0A7D7A0U0_9CLOTArseniteeffluxtransportermetallochaperoneArsDOS=ClostridiumintestinaleOX=36845GN=arsDPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.2716979980469	2	497.800217	993.585882	-0.4173	-0.00020773	-2.2197	-0.001105	-2.637	-0.0013127	497.7982558159292	35.829	0.27803	35.829	35.661	35.939	0					6	5	2	0	0	0	0.027462	1	1840	1840		17.365	0	1	13505			63034	36008	51985	52035	69165	69165					0.0888321748270755
VVKTRVQR	8	Unmodified	_VVKTRVQR_					0	0	0			REV__CON__Q61782	REV__CON__Q61782	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.31488037109375	2	493.3169	984.619247	0.87215	0.00043025	-1.092	-0.0005387	-0.21984	-0.00010845	493.3162563442904	32.504	1.0687	29.808	29.482	30.551	-2.6954					37	24	2	0	0	0	0.7388	1	785	785		11.511	0	1	32522	+	+	63035	16216	51986	52036	69166	69166					0.12632264045271313
VVKVDPNL	8	Unmodified	_VVKVDPNL_					0	0	0			REV__tr|A0A7D6VT78|A0A7D6VT78_9CLOT4Fe-4SbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01775PE=4SV=1	REV__tr|A0A7D6VT78|A0A7D6VT78_9CLOT4Fe-4SbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01775PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	442.2667541503906	2	442.26601	882.517468	-0.55069	-0.00024355	0.38544	0.00017047	-0.16526	-7.3087E-05	442.26593561826763	62.879	2.7177	59.421	58.57	61.288	-3.4577					114	55	4	0	0	0	0.70469	1	4389	4389		42.396	5.237	1	936690	+		63036	31578	51987	52037	69167	69167					0.07150972902832109
VVKVGENVLPP	11	Unmodified	_VVKVGENVLPP_					0	0	0		nc|ENSG00000117523|Q9Y520-2|PRRC2C;nc|ENSG00000117523|Q9Y520-3|PRRC2C;nc|ENSG00000117523|Q9Y520-6|PRRC2C;nc|ENSG00000117523|Q9Y520-4|PRRC2C;nc|ENSG00000117523|Q9Y520-5|PRRC2C;nc|ENSG00000117523|Q9Y520|PRRC2C;ENSG00000117523|ENST00000647382|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	nc|ENSG00000117523|Q9Y520-2|PRRC2C	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8425903320312	2	575.845156	1149.67576	-2.8608	-0.0016474	-0.58729	-0.00033819	-3.4481	-0.0019856	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.71789	1	14601	14601		23.523	1.5628	1	356230			63037	3261	51988	52038	69168	69168					0.10690847091291289
VVKWKFMVS	9	Unmodified	_VVKWKFMVS_					0	0	0		nc|ENSG00000197321|O95425-4|SVIL;nc|ENSG00000197321|O95425-3|SVIL;ENSG00000197321|ENST00000355867|SVIL;nc|ENSG00000197321|O95425-2|SVIL;ENST00000422642.6_2_10:30987145-31001569:+|nuORF	nc|ENSG00000197321|O95425-4|SVIL	nc|ENSG00000197321|O95425-4|SVIL	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.320556640625	2	562.320263	1122.62597	2.5282	0.0014217	1.4775	0.00083085	4.0058	0.0022525	562.3207017775884	133.97	0.47713	133.97	133.72	134.2	0					16	9	2	0	0	0	0.027462	1	15574	15574		16.473	0	1	45978			63038	8700	51989	52039	69169	69169					0.06956440881640447
VVLCCLMGF	9	Unmodified	_VVLCCLMGF_					0	0	0			REV__ENST00000469230.5_1_6:26383324-26383498:+|nuORF	REV__ENST00000469230.5_1_6:26383324-26383498:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	493.2701110839844	2	492.739402	983.464252	-0.34055	-0.0001678	2.2789	0.0011229	1.9383	0.00095509	492.7403626512126	100.4	1.19	99.565	98.666	99.856	-0.83052					41	23	2	0	0	0	0.027462	1	9103	9103		21.702	0	1	21195	+		63039	26240	51990	52040	69170	69170					-0.028141874673224265
VVLETLVVV	9	Unmodified	_VVLETLVVV_					0	0	0		ENST00000550482.1_1_12:54676362-54677673:+|nuORF	ENST00000550482.1_1_12:54676362-54677673:+|nuORF	ENST00000550482.1_1_12:54676362-54677673:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	485.8135681152344	2	485.812793	969.611034	1.4031	0.00068165	0.38188	0.00018552	1.785	0.00086717	485.8128285577155	147.57	4.5874	147.57	147.11	151.7	0					195	92	4	0	0	0	0.32337	1	17328	17328		60.294	0	1	1725900			63040	13588	51991	52041	69171	69171					0.12501272285294363
VVLFALIFN	9	Unmodified	_VVLFALIFN_					0	0	0		ENST00000539664.2_1_7:28993099-28993321:-|nuORF	ENST00000539664.2_1_7:28993099-28993321:-|nuORF	ENST00000539664.2_1_7:28993099-28993321:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.3204956054688	2	518.315503	1034.61645	0.97813	0.00050698	0.83677	0.00043371	1.8149	0.00094069	518.8181138643072	111.76	0.27398	111.76	111.6	111.88	0					9	5	2	0	0	0	0.027462	1	12701	12701		26.796	1.3459	1	32785			63041	13440	51992	52042	69172	69172					0.10052995867749814
VVLFKARTG	9	Unmodified	_VVLFKARTG_					0	0	0			REV__tr|A0A553SL78|A0A553SL78_NIACIPrephenatedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_20090PE=3SV=1	REV__tr|A0A553SL78|A0A553SL78_NIACIPrephenatedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_20090PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.8066101074219	2	495.808377	989.6022	-0.52816	-0.00026187	-3.8599	-0.0019138	-4.388	-0.0021756	495.80638684951504	144.26	1.4618	142.83	142.48	143.94	-1.4357					68	27	4	0	0	0	0.6653	1	14140	14140		24.203	2.2429	1	117760	+		63042	30196	51993	52043	69173	69173					0.10698343439457858
VVLGLAWYRR	10	Unmodified	_VVLGLAWYRR_					0	0	0			REV__ENST00000461320.5_1_1:150238924-150239633:-|nuORF	REV__ENST00000461320.5_1_1:150238924-150239633:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	412.5455627441406	3	411.580264	1231.71896	0.34956	0.00014387	2.4545	0.0010102	2.8041	0.0011541	411.5810196914185	63.487	1.5484	60.012	59.674	61.222	-3.475					57	31	3	0	0	0	0.027214	1	4604	4604		21.686	0.8486	1	57804	+		63043	18346	51994	52044	69174	69174					0.11237081659191972
VVLGNKVDKE	10	Unmodified	_VVLGNKVDKE_					0	0	0		ENSG00000123570|ENST00000243298|RAB9B	ENSG00000123570|ENST00000243298|RAB9B	ENSG00000123570|ENST00000243298|RAB9B	MULTI-SECPEP	OvCa9_classI_Rep2	2	550.3502197265625	2	550.819138	1099.62372	0.35715	0.00019673	-2.2657	-0.001248	-1.9086	-0.0010513	550.8179483778563	32.017	0.34651	29.307	29.085	29.431	-2.7097					9	6	2	0	0	0	0.026734	1	1031	1031		47.657	0	1	9774.9			63044	3605	51995	52045	69175	69175					0.07789683677492576
VVLGQFLVLK	10	Unmodified	_VVLGQFLVLK_					0	0	0		ENST00000420029.1_1_1:174726080-174726215:-|nuORF;ENST00000524628.1_1_11:65770029-65771240:+|nuORF;ENSG00000175334|ENST00000312175|BANF1	ENST00000420029.1_1_1:174726080-174726215:-|nuORF	ENST00000420029.1_1_1:174726080-174726215:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	558.3627319335938	2	558.362985	1114.71142	1.1312	0.00063164	-1.2351	-0.00068962	-0.10384	-5.7981E-05	558.3621271545404	128.5	1.5467	127.05	126.74	128.29	-1.4565					63	30	4	0	0	0	0.49558	4	12272	12272;12284;12295;12308		54.776	24.615	1	117390			63045	7535	51996	52046	69176;69177;69178;69179	69176					0.1586492933890895
VVLGQFLVLK	10	Unmodified	_VVLGQFLVLK_					0	0	0		ENST00000420029.1_1_1:174726080-174726215:-|nuORF;ENST00000524628.1_1_11:65770029-65771240:+|nuORF;ENSG00000175334|ENST00000312175|BANF1	ENST00000420029.1_1_1:174726080-174726215:-|nuORF	ENST00000420029.1_1_1:174726080-174726215:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	558.362985	1114.71142	1.4635	0.00081717	-1.669	-0.00093193	-0.20551	-0.00011475	558.3618463993029	127.18	1.2343	126.94	126.69	127.92	-0.2359	-0.12161	-0.00066178	NaN	54.776	53	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109800			63046	7535	51996	52046							0.1586492933890895
VVLGQFLVLK	10	Unmodified	_VVLGQFLVLK_					0	0	0		ENST00000420029.1_1_1:174726080-174726215:-|nuORF;ENST00000524628.1_1_11:65770029-65771240:+|nuORF;ENSG00000175334|ENST00000312175|BANF1	ENST00000420029.1_1_1:174726080-174726215:-|nuORF	ENST00000420029.1_1_1:174726080-174726215:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	558.362985	1114.71142	0.49164	0.00027451	-0.65432	-0.00036535	-0.16268	-9.0837E-05	558.3625364901704	128.3	1.2847	127.2	126.87	128.16	-1.0933	0.13978	0.00047137	NaN	54.776	56	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58909			63047	7535	51996	52046							0.1586492933890895
VVLHVITYT	9	Unmodified	_VVLHVITYT_					0	0	0			REV__tr|A0A553SSH6|A0A553SSH6_NIACIMajorfacilitatorsuperfamilydomain-containingprotein1OS=NialliacirculansOX=1397GN=CEQ21_03100PE=4SV=1	REV__tr|A0A553SSH6|A0A553SSH6_NIACIMajorfacilitatorsuperfamilydomain-containingprotein1OS=NialliacirculansOX=1397GN=CEQ21_03100PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.7653198242188	2	522.808042	1043.60153	1.0389	0.00054312	1.4223	0.00074362	2.4612	0.0012867	523.3105412870682	149.18	0.29202	149.18	148.97	149.26	0					6	5	2	0	0	0	0.027462	1	17459	17459		24.203	0	1	20822	+		63048	30840	51997	52047	69180	69180					0.08147503999748551
VVLHWKKL	8	Unmodified	_VVLHWKKL_					0	0	0			REV__tr|A0A7D7A1K8|A0A7D7A1K8_9CLOTTIGR03987familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15780PE=4SV=1	REV__tr|A0A7D7A1K8|A0A7D7A1K8_9CLOTTIGR03987familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15780PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.3262023925781	2	511.829112	1021.64367	-4.7599	-0.0024363	2.3946	0.0012256	-2.3653	-0.0012106	512.3313532043056	155.39	0.29326	153.9	153.82	154.11	-1.4911					8	6	2	0	0	0	0.028476	1	15381	15381		9.4706	0.64823	1	6734	+		63049	32496	51998	52048	69181	69181					0.13371524198794305
VVLIIHSPK	9	Unmodified	_VVLIIHSPK_					0	0	0		ENSG00000170113|ENST00000337435|NIPA1;nc|ENSG00000170113|Q7RTP0-2|NIPA1	ENSG00000170113|ENST00000337435|NIPA1	ENSG00000170113|ENST00000337435|NIPA1	MULTI-MSMS	OvCa9_classI_Rep3	3	503.3257141113281	2	503.326402	1004.63825	0.16809	8.4607E-05	-0.79943	-0.00040237	-0.63134	-0.00031777	503.32592163990955	113.76	2.5159	112.69	112.25	114.76	-1.0753					117	49	4	0	0	0	0.42057	1	8430	8430		50.025	2.3672	1	1085400			63050	7074	51999	52049	69182	69182					0.13611800616320124
VVLIIISF	8	Unmodified	_VVLIIISF_					0	0	0			REV__tr|A0A7D6VS19|A0A7D6VS19_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_14255PE=4SV=1	REV__tr|A0A7D6VS19|A0A7D6VS19_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_14255PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	451.93170166015625	2	452.299322	902.584091	-5.0112	-0.0022666	-2.3683	-0.0010712	-7.3795	-0.0033378	452.2982354116374	158.39	0.55859	156.8	156.66	157.22	-1.5858					22	17	2	0	0	0	0.028476	1	15645	15645		9.4706	0	1	8523.5	+		63051	31461	52000	52050	69183	69183					0.12890208464750685
VVLIILIFSRL	11	Unmodified	_VVLIILIFSRL_					0	0	0		tr|A0A553SUD8|A0A553SUD8_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06810PE=4SV=1	tr|A0A553SUD8|A0A553SUD8_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06810PE=4SV=1	tr|A0A553SUD8|A0A553SUD8_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_06810PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	429.2504577636719	3	429.29172	1284.85333	1.062	0.00045592	1.4831	0.00063668	2.5451	0.0010926	429.62743052425293	90.916	0.20409	89.681	89.538	89.742	-1.2355					5	3	2	0	0	0	0.025612	1	8049	8049		36.318	21.624	1	3619.5			63052	34598	52001	52051	69184	69184					0.22229722361271342
VVLIIPSD	8	Unmodified	_VVLIIPSD_					0	0	0			REV__tr|A0A7D6VTB0|A0A7D6VTB0_9CLOTGTP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07240PE=4SV=1	REV__tr|A0A7D6VTB0|A0A7D6VTB0_9CLOTGTP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07240PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	428.26165771484375	2	428.262936	854.51132	-2.1797	-0.00093349	-0.96416	-0.00041291	-3.1439	-0.0013464	428.2624599299376	144.02	1.6837	143.79	143.2	144.88	-0.22697					114	33	5	0	0	0	0.74816	1	14451	14451		15.636	0.97212	1	330270	+		63053	31588	52002	52052	69185	69185					0.07824454671322201
VVLKEFMWS	9	Unmodified	_VVLKEFMWS_					0	0	0			REV__RPS6KB1-VMP1|5|fusion;REV__RPS6KB1-VMP1|4|fusion	REV__RPS6KB1-VMP1|5|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	569.8013305664062	2	569.801903	1137.58925	-1.9391	-0.0011049	1.496	0.00085244	-0.44305	-0.00025245	569.802665430611	38.437	0.89101	35.728	35.469	36.36	-2.7097					39	17	3	0	0	0	0.61208	1	1806	1806		30.504	3.7075	1	168250	+		63054	29341;29342	52003	52053	69186	69186					0.025961442650668687
VVLKGRSFV	9	Unmodified	_VVLKGRSFV_					0	0	0		ENST00000261015.4_1_2:203776239-203776329:-|nuORF	ENST00000261015.4_1_2:203776239-203776329:-|nuORF	ENST00000261015.4_1_2:203776239-203776329:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	502.81390380859375	2	502.816202	1003.61785	-4.451	-0.0022381	0.22723	0.00011425	-4.2238	-0.0021238	502.8162192928447	153.83	1.4178	153.6	153.28	154.7	-0.22696					88	30	4	0	0	0	0.6653	1	15636	15636		24.203	0	1	684970			63055	9854	52004	52054	69187	69187					0.11618629956524273
VVLLFYGTI	9	Unmodified	_VVLLFYGTI_					0	0	0		nc|ENSG00000203581|Q96R84|OR1F2P;ENSG00000280204|ENST00000641544|OR1S1;ENSG00000168828|ENST00000377981|OR13J1;nc|ENSG00000280204|Q8NH92|OR1S1	nc|ENSG00000203581|Q96R84|OR1F2P	nc|ENSG00000203581|Q96R84|OR1F2P	MULTI-MSMS	OvCa9_classI_Rep3	3	512.804443359375	2	512.807511	1023.60047	0.48569	0.00024906	-4.4183	-0.0022657	-3.9326	-0.0020167	512.8051194113467	130.74	1.1749	129.61	129.32	130.49	-1.1249					50	23	3	0	0	0	0.58665	1	10391	10391		33.516	0	1	153750			63056	6946	52005	52055	69188	69188					0.0896128963083811
VVLLGVVVPS	10	Unmodified	_VVLLGVVVPS_					0	0	0			REV__ENSG00000105668|ENST00000222275|UPK1A	REV__ENSG00000105668|ENST00000222275|UPK1A	MULTI-SECPEP	OvCa9_classI_Rep3	3	492.3179626464844	2	491.320786	980.627018	-0.53218	-0.00026147	0.45868	0.00022536	-0.073497	-3.6111E-05	491.32090861588404	98.649	1.3916	96.964	96.646	98.038	-1.685					45	26	2	0	0	0	0.026822	1	6623	6623		23.042	0	1	233250	+		63057	17744	52006	52056	69189	69189					0.1359297852218333
VVLLNVLMKP	10	Unmodified	_VVLLNVLMKP_					0	0	0			REV__ENSG00000174957|ENST00000312298|OR5J2	REV__ENSG00000174957|ENST00000312298|OR5J2	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.8417358398438	2	563.356845	1124.69914	2.3719	0.0013362	2.7165	0.0015304	5.0884	0.0028666	563.3584214247768	96.945	0.64099	96.945	96.584	97.225	0					20	14	2	0	0	0	0.027021	1	10670	10670		15.642	0	1	341750	+		63058	21864	52007	52057	69190	69190					0.14177569604248674
VVLLPAVPLR	10	Unmodified	_VVLLPAVPLR_					0	0	0		ENST00000349457.7_1_16:57608924-57609494:+|nuORF	ENST00000349457.7_1_16:57608924-57609494:+|nuORF	ENST00000349457.7_1_16:57608924-57609494:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	539.831787109375	2	538.863152	1075.71175	-3.4351	-0.001851	3.1202	0.0016814	-0.31483	-0.00016965	538.8646905244119	150.15	1.8003	148.72	147.97	149.77	-1.4344					47	39	2	0	0	0	0.027084	1	14853	14853		24.203	0	1	12229			63059	10647	52008	52058	69191	69191					0.17692349058779655
VVLLPIFFQ	9	Unmodified	_VVLLPIFFQ_					0	0	0			REV__ENSG00000179639|ENST00000693622|FCER1A	REV__ENSG00000179639|ENST00000693622|FCER1A	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.3258666992188	2	538.331153	1074.64775	-6.8958	-0.0037122	-0.73041	-0.0003932	-7.6262	-0.0041054	538.3306472316852	159.34	1.4158	157.75	157.44	158.85	-1.5859					96	33	4	0	0	0	0.6959	1	15707	15707		19.36	1.0356	1	453340	+		63060	22134	52009	52059	69192	69192					0.11341568901866594
VVLLREPV	8	Unmodified	_VVLLREPV_					0	0	0			REV__ENSG00000111671|ENST00000524270|SPSB2	REV__ENSG00000111671|ENST00000524270|SPSB2	MULTI-SECPEP	OvCa99_classI_Rep5	1	462.7397155761719	2	462.797478	923.580402	-0.38757	-0.00017937	0.45048	0.00020848	0.062906	2.9113E-05	462.7974903899929	48.527	0.47022	48.527	48.292	48.762	0					20	10	3	0	0	0	0.028476	1	3534	3534		54.765	12.29	1	237190	+		63061	18046	52010	52060	69193	69193					0.11555538690890899
VVLMKKQH	8	Unmodified	_VVLMKKQH_					0	0	0		tr|A0A7D6ZTY3|A0A7D6ZTY3_9CLOTDUF951domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23925PE=4SV=1	tr|A0A7D6ZTY3|A0A7D6ZTY3_9CLOTDUF951domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23925PE=4SV=1	tr|A0A7D6ZTY3|A0A7D6ZTY3_9CLOTDUF951domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23925PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	491.25335693359375	2	491.796955	981.579357	-1.2612	-0.00062023	-1.6501	-0.00081149	-2.9112	-0.0014317	491.7958421173494	62.984	1.2574	60.24	59.745	61.002	-2.7444					50	23	3	0	0	0	0.028476	1	4753	4753		20.482	0	1	66817			63062	35761	52011	52061	69194	69194					0.08783001050346684
VVLMYVAVT	9	Unmodified	_VVLMYVAVT_					0	0	0			REV__ENSG00000158023|ENST00000288912|CFAP251	REV__ENSG00000158023|ENST00000288912|CFAP251	MULTI-SECPEP	OvCa9_classI_Rep3	3	498.7602844238281	2	497.785721	993.55689	-0.064419	-3.2067E-05	3.5735	0.0017788	3.5091	0.0017468	497.7872763322273	79.271	1.3493	76.931	76.562	77.912	-2.3399					50	26	3	0	0	0	0.027462	1	4286	4286		26.796	0	1	137830	+		63063	20545	52012	52062	69195	69195					0.05985356862061053
VVLNIVEVLP	10	Unmodified	_VVLNIVEVLP_					0	0	0		nc|ENSG00000140853|Q86WI3-4|NLRC5;ENSG00000140853|ENST00000688547|NLRC5;nc|ENSG00000140853|Q86WI3-2|NLRC5;nc|ENSG00000140853|Q86WI3-5|NLRC5;nc|ENSG00000140853|Q86WI3-6|NLRC5;ENST00000539881.5_1_16:57062253-57068433:+|nuORF	nc|ENSG00000140853|Q86WI3-4|NLRC5	nc|ENSG00000140853|Q86WI3-4|NLRC5	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.3408203125	2	547.844625	1093.6747	-1.5321	-0.00083933	-3.3444	-0.0018322	-4.8765	-0.0026716	547.8426338015213	72.701	2.9908	69.305	68.424	71.415	-3.3961					128	61	3	0	0	0	0.55359	1	5573	5573		47.657	0	1	1444700			63064	4878	52013	52063	69196	69196					0.13160632722360788
VVLPKNVNL	9	Unmodified	_VVLPKNVNL_					0	0	0		SCAP-SMARCC1|1|fusion;ENSG00000173473|ENST00000254480|SMARCC1;SMARCC1|p.K392Ifs*4|1|0.11|ENSG00000173473|chr3:47693291-47693292|-/A|frameshift_variant;ENST00000485737.1_1_3:47721925-47742822:-|nuORF	SCAP-SMARCC1|1|fusion	SCAP-SMARCC1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3158874511719	2	498.316035	994.617516	-0.044391	-2.2121E-05	-0.21861	-0.00010894	-0.263	-0.00013106	498.3157300992715	110.05	1.7303	109.88	109.41	111.14	-0.17236					105	34	7	0	0	0	0.55588	1	10391	10391		37.159	0	1	1087000			63065	7382	52014	52064	69197	69197					0.11999210236660929
VVLPLVFTLLL	11	Unmodified	_VVLPLVFTLLL_					0	0	0			REV__ENSG00000170128|ENST00000304244|GPR25	REV__ENSG00000170128|ENST00000304244|GPR25	MULTI-MSMS	OvCa9_classI_Rep3	3	409.6072082519531	3	409.608937	1225.80498	1.1396	0.00046679	-3.5153	-0.0014399	-2.3757	-0.00097312	409.6074659919173	107.95	5.8573	106.76	106.27	112.13	-1.1978					409	114	4	0	0	0	0.69099	1	7656	7656		32.751	2.4328	1	1037400	+		63066	21516	52015	52065	69198	69198					0.20111228721384578
VVLPRGLIL	9	Unmodified	_VVLPRGLIL_					0	0	0		OR2C3|p.L212R|1|0.24|ENSG00000196242|chr1:247531877-247531877|A/C|missense_variant	OR2C3|p.L212R|1|0.24|ENSG00000196242|chr1:247531877-247531877|A/C|missense_variant	OR2C3|p.L212R|1|0.24|ENSG00000196242|chr1:247531877-247531877|A/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	490.3358459472656	2	490.33677	978.658987	0.31976	0.00015679	-1.1553	-0.00056648	-0.83553	-0.00040969	490.3362879264998	135.18	3.9777	134.96	134.64	138.62	-0.22697					225	81	5	0	0	0	0.65476	1	13626	13626		25.45	1.2474	1	7114000			63067	15454	52016	52066	69199	69199					0.16880390996004735
VVLRPKSSI	9	Unmodified	_VVLRPKSSI_					0	0	0			REV__CABYR|p.S142Ffs*7|1|0.06|ENSG00000154040|chr18:24155922-24155923|-/C|frameshift_variant	REV__CABYR|p.S142Ffs*7|1|0.06|ENSG00000154040|chr18:24155922-24155923|-/C|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.8047790527344	2	499.821484	997.628415	-0.36267	-0.00018127	-3.1174	-0.0015582	-3.4801	-0.0017394	499.8194378138397	59.072	0.30217	55.68	55.502	55.805	-3.392					8	5	2	0	0	0	0.027343	1	3919	3919		90.777	16.522	1	17664	+		63068	15724	52017	52067	69200	69200					0.1295061261095043
VVLRSLLVP	9	Unmodified	_VVLRSLLVP_					0	0	0			REV__nc|ENSG00000179241|Q86YD5-2|LDLRAD3	REV__nc|ENSG00000179241|Q86YD5-2|LDLRAD3	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.3159484863281	2	498.334227	994.653902	-0.02928	-1.4591E-05	-3.2739	-0.0016315	-3.3032	-0.0016461	498.33255675566335	110.01	0.34569	109.83	109.71	110.06	-0.17237					8	6	2	0	0	0	0.027425	1	10359	10359		60.294	6.9425	1	6817	+		63069	22112	52018	52068	69201	69201					0.15636087133373167
VVLRVVQPQ	9	Unmodified	_VVLRVVQPQ_					0	0	0		ENST00000527191.1_1_11:6625447-6625588:-|nuORF	ENST00000527191.1_1_11:6625447-6625588:-|nuORF	ENST00000527191.1_1_11:6625447-6625588:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	518.8114013671875	2	519.326934	1036.63931	1.256	0.00065226	-2.4465	-0.0012705	-1.1905	-0.00061828	519.3255942902791	87.264	0.49687	85.833	85.642	86.139	-1.4311					15	9	2	0	0	0	0.027462	1	7642	7642		25.45	0	1	9867			63070	13228	52019	52069	69202	69202					0.12246014985225884
VVLRVVQPQ	9	Unmodified	_VVLRVVQPQ_					0	0	0		ENST00000527191.1_1_11:6625447-6625588:-|nuORF	ENST00000527191.1_1_11:6625447-6625588:-|nuORF	ENST00000527191.1_1_11:6625447-6625588:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	519.326934	1036.63931	-0.29696	-0.00015422	-9.8949	-0.0051387	-10.192	-0.0052929	519.3213905841362	88.06	0.25725	85.929	85.752	86.009	-2.1309	0.047835	-0.0034774	NaN	18.324	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7818.9			63071	13228	52019	52069							0.12246014985225884
VVLSIKKTF	9	Unmodified	_VVLSIKKTF_					0	0	0			REV__tr|A0A7D6VTK5|A0A7D6VTK5_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02845PE=4SV=1	REV__tr|A0A7D6VTK5|A0A7D6VTK5_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02845PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.6851196289062	2	517.83406	1033.65357	-0.43883	-0.00022724	-0.040732	-2.1092E-05	-0.47956	-0.00024833	517.8338542724023	58.292	0.90218	54.925	54.727	55.629	-3.3663					30	17	3	0	0	0	0.027462	1	3827	3827		21.96	14.767	1	46039	+		63072	31611	52020	52070	69203	69203					0.1380866741351383
VVLSIKKTF	9	Unmodified	_VVLSIKKTF_					0	0	0			REV__tr|A0A7D6VTK5|A0A7D6VTK5_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02845PE=4SV=1	REV__tr|A0A7D6VTK5|A0A7D6VTK5_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02845PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	517.83406	1033.65357	-0.80655	-0.00041766	-1.9716	-0.001021	-2.7781	-0.0014386	517.8328629660197	54.827	0.348	54.827	54.675	55.023	0	-0.0063259	-0.0017837	NaN	21.96	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115180	+		63073	31611	52020	52070							0.1380866741351383
VVLSIKKTF	9	Unmodified	_VVLSIKKTF_					0	0	0			REV__tr|A0A7D6VTK5|A0A7D6VTK5_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02845PE=4SV=1	REV__tr|A0A7D6VTK5|A0A7D6VTK5_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02845PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	517.83406	1033.65357	-0.40436	-0.00020939	-0.15929	-8.2484E-05	-0.56364	-0.00029187	517.8338682492083	57.54	0.99741	54.748	54.477	55.475	-2.792	-0.085291	9.3209E-05	NaN	21.96	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	42480	+		63074	31611	52020	52070							0.1380866741351383
VVMAGLFAF	9	Unmodified	_VVMAGLFAF_					0	0	0			REV__ENST00000562886.1_1_16:84088056-84093058:-|nuORF	REV__ENST00000562886.1_1_16:84088056-84093058:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	478.26483154296875	2	477.759507	953.50446	-1.0996	-0.00052532	-3.0401	-0.0014525	-4.1397	-0.0019778	477.75817044935474	60.529	1.0033	57.759	57.553	58.557	-2.7702					22	18	2	0	0	0	0.027462	1	4548	4548		8.8223	0.59103	1	11450	+		63075	19706	52021	52071	69204	69204					0.02584818519108012
VVMETMFIVA	10	Oxidation (M)	_VVMETM(Oxidation (M))FIVA_		VVM(0.015)ETM(0.985)FIVA		VVM(-18)ETM(18)FIVA	0	0	1			REV__ENSG00000073910|ENST00000542859|FRY	REV__ENSG00000073910|ENST00000542859|FRY	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2880859375	2	578.293053	1154.57155	-7.6654	-0.0044328	2.0514	0.0011863	-5.614	-0.0032465	578.2940529397285	163.97	0.95636	162.57	161.7	162.66	-1.3925					62	21	3	0	0	0	0.53404	1	14257	14257		50.025	13.578	2	144290	+		63076	16942	52022	52072	69205	69205		400			0.000450609478775732
VVMGHELTHAF	11	Unmodified	_VVMGHELTHAF_					0	0	0		ENST00000490579.1_1_3:183995094-184008674:+|nuORF;ENST00000488401.5_1_3:183993962-184009147:+|nuORF;nc|ENSG00000145194|P0DPD6-3|ECE2;ENSG00000145194|ENST00000404464|ECE2;nc|ENSG00000145194|P0DPD6|ECE2;nc|ENSG00000284917|P0DPD8|EEF1AKMT4-ECE2	ENST00000490579.1_1_3:183995094-184008674:+|nuORF	ENST00000490579.1_1_3:183995094-184008674:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	414.2103576660156	3	414.209619	1239.60703	0.28415	0.0001177	-0.22358	-9.2608E-05	0.060574	2.509E-05	414.2094540183585	49.088	5.926	49.088	48.204	54.13	0					277	137	3	0	0	0	0.69424	1	3578	3578		31.634	3.0575	1	1950600			63077	5207	52023	52073	69206	69206					-0.003191404800872988
VVMITMLVL	9	Unmodified	_VVMITMLVL_					0	0	0		nc|ENSG00000174502|Q7LBE3-2|SLC26A9;ENSG00000174502|ENST00000367135|SLC26A9	nc|ENSG00000174502|Q7LBE3-2|SLC26A9	nc|ENSG00000174502|Q7LBE3-2|SLC26A9	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8049011230469	2	509.805599	1017.59665	0.17054	8.6941E-05	-0.20871	-0.0001064	-0.038176	-1.9462E-05	509.80544933708404	111.24	1.4787	111.1	110.78	112.26	-0.13961					90	29	5	0	0	0	0.34496	1	10522	10522		57.811	0	1	1582600			63078	15185	52024	52074	69207	69207					0.08855160541122586
VVMITMLVL	9	Unmodified	_VVMITMLVL_					0	0	0		nc|ENSG00000174502|Q7LBE3-2|SLC26A9;ENSG00000174502|ENST00000367135|SLC26A9	nc|ENSG00000174502|Q7LBE3-2|SLC26A9	nc|ENSG00000174502|Q7LBE3-2|SLC26A9	MULTI-MSMS	OvCa9_classI_Rep3	3	509.8052062988281	2	509.805599	1017.59665	1.7031	0.00086826	-1.872	-0.00095435	-0.16887	-8.6091E-05	509.8046299729127	112.22	1.4743	111.12	110.75	112.22	-1.1038					89	29	4	0	0	0	0.22913	2	8238	8238;8246		71.378	1.5959	1	1564800			63079	15185	52024	52074	69208;69209	69208					0.08855160541122586
VVNDVDLPP	9	Unmodified	_VVNDVDLPP_					0	0	0		ENSG00000172915|ENST00000379939|NBEA;nc|ENSG00000172915|Q8NFP9|NBEA;nc|ENSG00000172915|Q8NFP9-2|NBEA;nc|ENSG00000172915|Q8NFP9-3|NBEA	ENSG00000172915|ENST00000379939|NBEA	ENSG00000172915|ENST00000379939|NBEA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.2442932128906	2	484.258382	966.502212	-0.65893	-0.00031909	-2.5519	-0.0012358	-3.2108	-0.0015549	484.25724796411015	124.1	0.59941	122.71	122.42	123.02	-1.3908					15	11	2	0	0	0	0.027462	1	11756	11756		31.955	5.2619	1	21942			63080	7329	52025	52075	69210	69210					0.017620613149915698
VVNEFMWFF	9	Unmodified	_VVNEFMWFF_					0	0	0			REV__ENSG00000088305|ENST00000328111|DNMT3B	REV__ENSG00000088305|ENST00000328111|DNMT3B	MULTI-MSMS	OvCa99_classI_Rep5	1	407.19476318359375	3	406.859927	1217.55795	1.0426	0.00042418	-0.085001	-3.4584E-05	0.95756	0.00038959	406.85983839171695	22.836	0.19358	22.836	22.7	22.894	0					8	4	2	0	0	0	0.69123	1	262	262		20.947	0.10978	1	34757	+		63081	17176	52026	52076	69211	69211					-0.0421242876902852
VVNILSSSSPQ	11	Unmodified	_VVNILSSSSPQ_					0	0	0		nc|ENSG00000106991|P17813-2|ENG;ENSG00000106991|ENST00000373203|ENG;ENST00000486329.1_1_9:130581879-130586657:-|nuORF	nc|ENSG00000106991|P17813-2|ENG	nc|ENSG00000106991|P17813-2|ENG	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.7822265625	2	565.806228	1129.5979	-0.39924	-0.00022589	-0.55872	-0.00031613	-0.95796	-0.00054202	565.8058032854162	40.028	0.4074	40.028	39.84	40.247	0					15	8	3	0	0	0	0.025759	1	2400	2400		28.081	11.608	1	214270			63082	2580	52027	52077	69212	69212					0.038287894352379226
VVNIQGKSI	9	Unmodified	_VVNIQGKSI_					0	0	0		ENST00000299563.4_1_11:74547841-74547952:+|nuORF	ENST00000299563.4_1_11:74547841-74547952:+|nuORF	ENST00000299563.4_1_11:74547841-74547952:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	479.28973388671875	2	479.290017	956.565481	0.48542	0.00023266	-0.92112	-0.00044148	-0.4357	-0.00020882	479.28944941406894	42.946	1.3362	40.237	39.917	41.253	-2.7097					73	26	4	0	0	0	0.34496	1	2349	2349		57.811	1.0902	1	745960			63083	10162	52028	52078	69213	69213					0.0854604682289164
VVNKIRASS	9	Unmodified	_VVNKIRASS_					0	0	0		ENSG00000214842|ENST00000399080|RAD51AP2	ENSG00000214842|ENST00000399080|RAD51AP2	ENSG00000214842|ENST00000399080|RAD51AP2	MULTI-MSMS	OvCa9_classI_Rep3	3	487.2922668457031	2	487.293091	972.571629	-3.3803	-0.0016472	3.3886	0.0016513	0.0083104	4.0496E-06	487.29467626542595	143.85	1.2856	142.86	142.44	143.72	-0.9903					55	25	3	0	0	0	0.59983	1	12003	12003		31.955	1.4512	1	83168			63084	9185	52029	52079	69214	69214					0.08424565054417599
VVNLQHNRA	9	Unmodified	_VVNLQHNRA_					0	0	0			REV__ENST00000466697.1_1_1:20216953-20224263:+|nuORF	REV__ENST00000466697.1_1_1:20216953-20224263:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.3212280273438	2	525.793789	1049.57303	-0.36809	-0.00019354	2.4471	0.0012866	2.079	0.0010931	525.7950348878154	109.68	1.0531	108.04	107.66	108.71	-1.6419					29	19	2	0	0	0	0.027462	1	10146	10146		23.042	0	1	90098	+		63085	21497	52030	52080	69215	69215					0.050221991431726565
VVNLQHNRA	9	Unmodified	_VVNLQHNRA_					0	0	0			REV__ENST00000466697.1_1_1:20216953-20224263:+|nuORF	REV__ENST00000466697.1_1_1:20216953-20224263:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	525.793789	1049.57303	-0.63846	-0.0003357	2.7438	0.0014427	2.1054	0.001107	525.7952708044882	109.06	1.101	107.87	107.56	108.66	-1.1978	-0.085287	0.00015611	NaN	23.042	30	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103060	+		63086	21497	52030	52080							0.050221991431726565
VVNSQLPLL	9	Unmodified	_VVNSQLPLL_					0	0	0		nc|ENSG00000167851|Q9UGN4-4|CD300A;nc|ENSG00000167851|Q9UGN4-2|CD300A;ENST00000582319.5_1_17:72462842-72477477:+|nuORF;ENSG00000167851|ENST00000360141|CD300A	nc|ENSG00000167851|Q9UGN4-4|CD300A	nc|ENSG00000167851|Q9UGN4-4|CD300A	MULTI-MSMS	OvCa9_classI_Rep2	2	491.8003845214844	2	491.800217	981.585882	0.45767	0.00022508	-0.86132	-0.0004236	-0.40365	-0.00019852	491.7997614216502	106.26	3.1068	105.82	105.5	108.61	-0.43642					130	62	3	0	0	0	0.22621	1	9915	9915		71.877	0	1	1827600			63087	6843	52031	52081	69216	69216					0.09435217482723601
VVPALLHP	8	Unmodified	_VVPALLHP_					0	0	0			REV__tr|A0A553SNT9|A0A553SNT9_NIACIDNAtranslocaseFtsKOS=NialliacirculansOX=1397GN=CEQ21_25185PE=3SV=1	REV__tr|A0A553SNT9|A0A553SNT9_NIACIDNAtranslocaseFtsKOS=NialliacirculansOX=1397GN=CEQ21_25185PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	422.7383117675781	2	423.265813	844.517074	2.0763	0.00087882	0.42904	0.0001816	2.5053	0.0010604	423.26597490371745	87.267	0.36559	87.267	87.054	87.42	0					12	8	2	0	0	0	0.028476	1	9220	9220		33.493	8.989	1	275450	+		63088	30452	52032	52082	69217	69217					0.08859597973651034
VVPALLLTG	9	Unmodified	_VVPALLLTG_					0	0	0		ENST00000526349.5_1_8:42716994-42725245:-|nuORF	ENST00000526349.5_1_8:42716994-42725245:-|nuORF	ENST00000526349.5_1_8:42716994-42725245:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	441.78851318359375	2	441.786579	881.558604	1.974	0.00087209	1.2013	0.00053073	3.1753	0.0014028	441.7869815621319	65.076	1.9762	62.352	61.811	63.787	-2.7245					98	38	4	0	0	0	0.65476	1	4981	4981		25.45	6.0902	1	329800			63089	13213	52033	52083	69218	69218					0.11308733942314575
VVPARPCL	8	Unmodified	_VVPARPCL_					0	0	0			REV__ENST00000356384.4_1_9:137329758-137329917:+|nuORF	REV__ENST00000356384.4_1_9:137329758-137329917:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	427.7491760253906	2	427.749473	853.484393	-0.15778	-6.7491E-05	-3.4736	-0.0014858	-3.6313	-0.0015533	427.7478116597226	54.028	1.1989	54.028	53.692	54.891	0					72	28	4	0	0	0	0.75991	1	4327	4327		21.702	0	1	5728900	+		63090	24761	52034	52084	69219	69219					0.05179067579160801
VVPDKIEL	8	Unmodified	_VVPDKIEL_					0	0	0			REV__nc|ENSG00000129493|Q86XA9-2|HEATR5A	REV__nc|ENSG00000129493|Q86XA9-2|HEATR5A	MULTI-MSMS	OvCa9_classI_Rep3	3	456.7718811035156	2	456.773668	911.532783	-2.6183	-0.001196	-0.38222	-0.00017459	-3.0005	-0.0013706	456.77340273142477	142.71	1.7302	141.7	141.28	143.01	-1.0106					71	34	3	0	0	0	0.73626	1	11831	11831		33.516	0	1	453300	+		63091	18901	52035	52085	69220	69220					0.07347839700048553
VVPGHLITR	9	Unmodified	_VVPGHLITR_					0	0	0		ENSG00000125378|ENST00000245451|BMP4	ENSG00000125378|ENST00000245451|BMP4	ENSG00000125378|ENST00000245451|BMP4	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.3048400878906	2	496.306001	990.597449	-4.4709	-0.0022189	0.17198	8.5355E-05	-4.2989	-0.0021336	496.30601677718755	154.78	0.74774	153.33	153.16	153.9	-1.4516					30	18	2	0	0	0	0.67509	1	15330	15330		23.042	1.3402	1	66174			63092	3703	52036	52086	69221	69221					0.1017745929668763
VVPGPKPGLPA	11	Unmodified	_VVPGPKPGLPA_					0	0	0			REV__ENAM|p.E968Afs*96|1|0.07|ENSG00000132464|chr4:70644328-70644329|-/CC|frameshift_variant	REV__ENAM|p.E968Afs*96|1|0.07|ENSG00000132464|chr4:70644328-70644329|-/CC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.3132934570312	2	516.316035	1030.61752	-5.454	-0.002816	1.4276	0.00073712	-4.0264	-0.0020789	516.3166829666766	156.94	1.6079	155.39	155.01	156.62	-1.545					108	44	5	0	0	0	0.72244	1	15526	15526		21.96	0	1	509660	+		63093	16354	52037	52087	69222	69222					0.10343210236646883
VVPGPMPLPLA	11	Unmodified	_VVPGPMPLPLA_					0	0	0			REV__ENSG00000147799|ENST00000377307|ARHGAP39	REV__ENSG00000147799|ENST00000377307|ARHGAP39	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.8003540039062	2	545.820095	1089.62564	2.1044	0.0011486	-3.179	-0.0017352	-1.0746	-0.00058652	545.8182156743941	100.35	1.8925	100.35	98.877	100.77	0					75	45	3	0	0	0	0.025902	1	11090	11090		17.365	6.4994	1	540230	+		63094	20083	52038	52088	69223	69223					0.08441021161797835
VVPGPYIWGHS	11	Unmodified	_VVPGPYIWGHS_					0	0	0			REV__ENSG00000129450|ENST00000250360|SIGLEC9	REV__ENSG00000129450|ENST00000250360|SIGLEC9	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3150634765625	2	606.314023	1210.61349	-0.36546	-0.00022158	0.090632	5.4951E-05	-0.27483	-0.00016663	606.313846558734	100.21	4.8548	97.886	97.315	102.17	-2.3253					183	94	4	0	0	0	0.56722	1	8988	8988		47.657	3.2801	1	584000	+		63095	18898	52039	52089	69224	69224					0.016611207429377828
VVPHSCGELRV	11	Unmodified	_VVPHSCGELRV_					0	0	0			REV__nc|ENSG00000060069|Q9Y5B0-4|CTDP1	REV__nc|ENSG00000060069|Q9Y5B0-4|CTDP1	MULTI-MSMS	OvCa9_classI_Rep3	3	598.3167114257812	2	598.31624	1194.61793	1.4194	0.00084925	-2.0923	-0.0012519	-0.67292	-0.00040262	598.315419282376	108.54	8.5813	107.34	106.85	115.43	-1.1978					384	169	6	0	0	0	0.5466	1	8012	8012		49.536	5.1589	1	23942000	+		63096	16737	52040	52090	69225	69225					0.028402618941981927
VVPIVLLAV	9	Unmodified	_VVPIVLLAV_					0	0	0			REV__ENST00000462375.5_1_9:134385592-134386855:+|nuORF	REV__ENST00000462375.5_1_9:134385592-134386855:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	461.77020263671875	2	461.820421	921.62629	0.5513	0.0002546	-0.73013	-0.00033719	-0.17883	-8.2587E-05	461.8202716811026	161.06	2.1673	161.06	159.86	162.02	0					54	42	2	0	0	0	0.027462	1	18973	18973		14.664	0	1	31847	+		63097	18963	52041	52091	69226	69226					0.16234183873120855
VVPLAREVNK	10	Unmodified	_VVPLAREVNK_					0	0	0		chr17:50192693-50194721|88|399.06|0.0|25.25|-|1|COL1A1,COL1A1|1	chr17:50192693-50194721|88|399.06|0.0|25.25|-|1|COL1A1,COL1A1|1	chr17:50192693-50194721|88|399.06|0.0|25.25|-|1|COL1A1,COL1A1|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.8273315429688	2	562.842948	1123.67134	2.1954	0.0012356	-1.3112	-0.00073798	0.8842	0.00049767	562.8416979951389	92.464	0.54604	92.464	92.216	92.762	0					15	12	2	0	0	0	0.026915	1	9973	9973		35.618	19.976	1	202990			63098	389	52042	52092	69227	69227					0.11445382668375714
VVPQEHNTLP	10	Unmodified	_VVPQEHNTLP_					0	0	0		ENSG00000175105|ENST00000636215|ZNF654	ENSG00000175105|ENST00000636215|ZNF654	ENSG00000175105|ENST00000636215|ZNF654	MULTI-MSMS	OvCa99_classI_Rep5	1	567.3016967773438	2	567.301113	1132.58767	-0.21997	-0.00012479	-0.81475	-0.00046221	-1.0347	-0.000587	567.3006852173389	58.912	2.4584	58.912	58.613	61.071	0					174	61	6	0	0	0	0.10076	1	5044	5044		113.41	1.0007	1	116410000			63099	7516	52043	52093	69228	69228					0.026682265006684247
VVPRQLLLL	9	Unmodified	_VVPRQLLLL_					0	0	0		ENST00000474541.1_1_1:247241930-247242071:-|nuORF	ENST00000474541.1_1_1:247241930-247242071:-|nuORF	ENST00000474541.1_1_1:247241930-247242071:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	525.8543090820312	2	525.855327	1049.6961	-2.3923	-0.001258	2.3094	0.0012144	-0.082867	-4.3576E-05	525.856409395684	147.69	1.4012	146.25	145.88	147.28	-1.4351					56	27	3	0	0	0	0.65476	1	14568	14568		25.45	1.2474	1	76184			63100	12435	52044	52094	69229	69229					0.17324062541774765
VVPSFLPSR	9	Unmodified	_VVPSFLPSR_					0	0	0			REV__ENSG00000182521|ENST00000247219|TBPL2	REV__ENSG00000182521|ENST00000247219|TBPL2	MULTI-MSMS	OvCa9_classI_Rep3	3	501.29046630859375	2	501.292559	1000.57057	-1.4695	-0.00073667	-2.6975	-0.0013522	-4.167	-0.0020889	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.62352	1	11135	11135		29.15	2.4566	1	97838	+		63101	22300	52045	52095	69230	69230					0.07030350685533904
VVPSRLLLL	9	Unmodified	_VVPSRLLLL_					0	0	0			REV__ENST00000419769.6_1_10:127408273-127409798:+|nuORF	REV__ENST00000419769.6_1_10:127408273-127409798:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	505.3412170410156	2	505.342052	1008.66955	-1.2256	-0.00061935	0.24452	0.00012356	-0.9811	-0.00049579	505.3419478940064	134.8	1.6252	133.68	133.41	135.03	-1.1226					106	32	5	0	0	0	0.33652	1	10904	10904		58.782	0	1	959590	+		63102	25586	52046	52096	69231	69231					0.16556373650439582
VVPTKARE	8	Unmodified	_VVPTKARE_					0	0	0		ENST00000390289.2_1_22:22673091-22673434:+|nuORF	ENST00000390289.2_1_22:22673091-22673434:+|nuORF	ENST00000390289.2_1_22:22673091-22673434:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	450.26904296875	2	450.269084	898.523616	1.9084	0.0008593	-1.9638	-0.00088423	-0.055366	-2.4929E-05	450.26807810544716	61.38	1.5642	58.311	57.573	59.137	-3.0685					65	43	2	0	0	0	0.74754	1	2092	2092		27.882	3.6795	1	26008			63103	11202	52047	52097	69232	69232					0.07029491134369437
VVPVLKMN	8	Unmodified	_VVPVLKMN_					0	0	0			REV__ENSG00000173402|ENST00000308775|DAG1	REV__ENSG00000173402|ENST00000308775|DAG1	MULTI-MSMS	OvCa9_classI_Rep2	2	450.2737731933594	2	450.272781	898.531009	-0.13529	-6.0919E-05	4.3545	0.0019607	4.2192	0.0018998	450.27464677011136	147.54	1.7967	147.31	146.82	148.62	-0.22696					100	35	5	0	0	0	0.75915	2	14934	14934;14940		21.702	2.1574	1	344090	+		63104	21769	52048	52098	69233;69234	69233					0.07768507410457914
VVPVLPSAVQK	11	Unmodified	_VVPVLPSAVQK_					0	0	0		VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant;nc|ENSG00000038427|P13611-5|VCAN;ENSG00000038427|ENST00000265077|VCAN;nc|ENSG00000038427|P13611-2|VCAN;VCAN|p.Q2143Kfs*20|1|0.07|ENSG00000038427|chr5:83539428-83539429|-/AAAAAGAAGAA|frameshift_variant;VCAN|p.G2239Afs*2|1|0.05|ENSG00000038427|chr5:83539715-83539715|A/-|frameshift_variant;ENST00000513016.5_1_5:82832752-82876250:+|nuORF	VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant	VCAN|p.T2961Qfs*8|1|0.08|ENSG00000038427|chr5:83541882-83541882|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	568.8539428710938	2	568.855524	1135.69649	-6.0828	-0.0034602	2.2546	0.0012825	-3.8282	-0.0021777	568.856661515311	161.9	1.6548	160.28	159.93	161.59	-1.6239					133	43	5	0	0	0	0.72473	1	16065	16065		19.104	0	1	804000			63105	1099	52049	52099	69235	69235					0.1340743747093711
VVPWPPASASW	11	Unmodified	_VVPWPPASASW_					0	0	0		ENST00000566501.5_1_16:28699926-28700127:+|nuORF	ENST00000566501.5_1_16:28699926-28700127:+|nuORF	ENST00000566501.5_1_16:28699926-28700127:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	598.8095092773438	2	598.808574	1195.60259	-0.27081	-0.00016216	0.46963	0.00028122	0.19882	0.00011906	598.8089070417255	110.82	1.5782	110.68	110.34	111.91	-0.13961					110	31	5	0	0	0	0.62497	1	10438	10438		42.396	4.5846	1	950560			63106	13845	52050	52100	69236	69236					0.01261718368664333
VVPYKYSRKFY	11	Unmodified	_VVPYKYSRKFY_					0	0	0		tr|A0A553SFN9|A0A553SFN9_NIACIEsteraseOS=NialliacirculansOX=1397GN=CEQ21_09220PE=4SV=1	tr|A0A553SFN9|A0A553SFN9_NIACIEsteraseOS=NialliacirculansOX=1397GN=CEQ21_09220PE=4SV=1	tr|A0A553SFN9|A0A553SFN9_NIACIEsteraseOS=NialliacirculansOX=1397GN=CEQ21_09220PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	483.9366760253906	3	483.934484	1448.78162	0.61076	0.00029557	3.9508	0.0019119	4.5616	0.0022075	483.9363500379811	67.695	1.7974	64.808	64.441	66.239	-2.8873					108	35	5	0	0	0	0.72466	1	2879	2879		20.03	4.6974	1	342710			63107	33057	52051	52101	69237	69237					0.07518182936746598
VVPYYIPE	8	Unmodified	_VVPYYIPE_					0	0	0			REV__nc|ENSG00000165323|Q8TDW7|FAT3	REV__nc|ENSG00000165323|Q8TDW7|FAT3	MULTI-SECPEP	OvCa9_classI_Rep3	3	490.3363952636719	2	490.260394	978.506234	-1.6163	-0.0007924	-0.62238	-0.00030513	-2.2387	-0.0010975	490.2605057633198	137.02	1.5117	135.93	135.41	136.93	-1.0858					50	30	2	0	0	0	0.028476	1	11202	11202		57.453	5.1535	1	56189	+		63108	21079	52052	52102	69238	69238					0.01612150808705337
VVQATPPTIT	10	Unmodified	_VVQATPPTIT_					0	0	0			REV__COX6A1-CAPZA1|1|fusion;REV__ENSG00000116489|ENST00000263168|CAPZA1	REV__ENSG00000116489|ENST00000263168|CAPZA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.8087158203125	2	513.795132	1025.57571	1.1819	0.00060728	3.5384	0.001818	4.7204	0.0024253	513.7969471763984	111.57	0.45323	111.57	111.29	111.74	0					14	9	2	0	0	0	0.026752	1	12662	12662		27.882	3.6795	1	89333	+		63109	16229;18302	52053	52103	69239	69239					0.06394609757467151
VVQDIKDLPVL	11	Unmodified	_VVQDIKDLPVL_					0	0	0			REV__ENSG00000135740|ENST00000299798|SLC9A5	REV__ENSG00000135740|ENST00000299798|SLC9A5	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8687744140625	2	619.871371	1237.72819	-1.8762	-0.001163	-1.2328	-0.00076421	-3.109	-0.0019272	619.8704234308321	147.79	3.8764	146.35	144.25	148.12	-1.4351					189	77	4	0	0	0	0.72466	1	14690	14690		19.997	1.7347	1	269210	+		63110	19316	52054	52104	69240	69240					0.11883385434202864
VVQEQIVEP	9	Unmodified	_VVQEQIVEP_					0	0	0			REV__chr15:53523322-53540662|224|18.24|0.17|6.76|-|2|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|34	REV__chr15:53523322-53540662|224|18.24|0.17|6.76|-|2|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|34	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.3297729492188	2	520.784764	1039.55498	1.5707	0.00081797	1.0159	0.00052909	2.5866	0.0013471	520.7852236066961	122.24	0.36848	122.24	121.94	122.31	0					12	7	2	0	0	0	0.027462	1	14057	14057		47.657	12.039	1	85074	+		63111	15922	52055	52105	69241	69241					0.036780193777985914
VVQEQIVEP	9	Unmodified	_VVQEQIVEP_					0	0	0			REV__chr15:53523322-53540662|224|18.24|0.17|6.76|-|2|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|34	REV__chr15:53523322-53540662|224|18.24|0.17|6.76|-|2|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|34	MULTI-MATCH	OvCa9_classI_Rep3	3		2	520.784764	1039.55498	1.5196	0.00079136	-0.60354	-0.00031432	0.91602	0.00047705	520.7845912274481	123.51	0.46375	122.48	122.2	122.67	-1.0377	0.091655	-0.0011504	NaN	47.657	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12775	+		63112	15922	52055	52105							0.036780193777985914
VVQEQIVEP	9	Unmodified	_VVQEQIVEP_					0	0	0			REV__chr15:53523322-53540662|224|18.24|0.17|6.76|-|2|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|34	REV__chr15:53523322-53540662|224|18.24|0.17|6.76|-|2|TE_info:L1PA2,L1PA2_dup4399,L1,LINE,donor,+,53540662,53546677|WDR72,None|34	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	520.784764	1039.55498	-0.74254	-0.0003867	0.66301	0.00034528	-0.079536	-4.1421E-05	520.7850903518699	123.82	0.39347	122.43	122.27	122.67	-1.3908	0.048407	0.00016877	NaN	47.657	10	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10462	+		63113	15922	52055	52105							0.036780193777985914
VVQGAPLSL	9	Unmodified	_VVQGAPLSL_					0	0	0			REV__nc|ENSG00000155744|Q8IXS8|HYCC2	REV__nc|ENSG00000155744|Q8IXS8|HYCC2	MULTI-MSMS	OvCa99_classI_Rep5	1	442.2671813964844	2	442.26601	882.517468	0.40326	0.00017835	-0.67284	-0.00029757	-0.26958	-0.00011923	442.2655579068143	59.582	1.9739	59.582	59.011	60.984	0					105	49	4	0	0	0	0.28934	1	5158	5158		64.207	2.0999	1	6942800	+		63114	20437	52056	52106	69242	69242					0.07150972902854846
VVQHRRAQ	8	Unmodified	_VVQHRRAQ_					0	0	0			REV__ENST00000426654.6_1_16:69599384-69602431:+|nuORF	REV__ENST00000426654.6_1_16:69599384-69602431:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.2711181640625	2	497.288674	992.562795	-0.29635	-0.00014737	-2.0229	-0.001006	-2.3193	-0.0011533	497.28789988810865	35.657	0.23273	35.657	35.566	35.799	0					6	4	2	0	0	0	0.028476	1	1816	1816		33.516	1.5607	1	18431	+		63115	25668	52057	52107	69243	69243					0.06621636208603832
VVQLVTTGPEV	11	Unmodified	_VVQLVTTGPEV_					0	0	0			REV__nc|ENSG00000023228|P28331-5|NDUFS1	REV__nc|ENSG00000023228|P28331-5|NDUFS1	MULTI-SECPEP	OvCa99_classI_Rep5	1	571.2847900390625	2	571.326796	1140.63904	2.7704	0.0015828	4.11	0.0023482	6.8805	0.003931	571.3288314086708	102.42	1.2313	102.42	101.87	103.1	0					75	28	4	0	0	0	0.023007	1	11513	11513		72.879	14.097	1	2519400	+		63116	28709	52058	52108	69244	69244					0.07434550474704338
VVQMEDGDT	9	Unmodified	_VVQMEDGDT_					0	0	0			REV__ENST00000547226.5_1_12:56716788-56717917:-|nuORF	REV__ENST00000547226.5_1_12:56716788-56717917:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.2711181640625	2	497.213314	992.412076	-0.34405	-0.00017106	2.2329	0.0011102	1.8889	0.00093917	497.21485125076	35.73	0.23199	35.73	35.614	35.846	0					6	4	2	0	0	0	0.027462	1	1816	1816		35.618	8.9254	1	28968	+		63117	27432	52059	52109	69245	69245					-0.08443356075736119
VVQSHLDVRM	10	Oxidation (M)	_VVQSHLDVRM(Oxidation (M))_		VVQSHLDVRM(1)		VVQSHLDVRM(56)	0	0	1		ENST00000556236.1_1_14:75593878-75603574:+|nuORF	ENST00000556236.1_1_14:75593878-75603574:+|nuORF	ENST00000556236.1_1_14:75593878-75603574:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	600.3153076171875	2	600.313697	1198.61284	1.0965	0.00065822	-1.263	-0.00075817	-0.16651	-9.9956E-05	600.3130364211771	100.96	4.107	99.359	98.898	103	-1.6053					207	78	6	0	0	0	0.48398	2	6882	6877;6882		56.434	10.462	1	611030			63118	13655	52060	52110	69246;69247	69247		353			0.021479580315826752
VVQTRLIE	8	Unmodified	_VVQTRLIE_					0	0	0			REV__nc|ENSG00000155657|Q8WZ42-12|TTN;REV__TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant	REV__nc|ENSG00000155657|Q8WZ42-12|TTN	MULTI-MSMS	OvCa9_classI_Rep4_	4	479.289794921875	2	479.290017	956.565481	-0.94369	-0.0004523	-0.031896	-1.5287E-05	-0.97559	-0.00046759	479.2900175316011	43.202	1.4878	40.195	39.853	41.341	-3.0074					79	28	4	0	0	0	0.53531	1	2097	2097		73.975	7.5455	1	3192700	+		63119	28942;32737	52061	52111	69248	69248					0.08546046822903008
VVQVSDNY	8	Unmodified	_VVQVSDNY_					0	0	0			REV__nc|ENSG00000117114|O95490-2|ADGRL2	REV__nc|ENSG00000117114|O95490-2|ADGRL2	MULTI-MSMS	OvCa9_classI_Rep3	3	462.2267761230469	2	462.227082	922.439611	-2.0879	-0.0009651	1.0091	0.00046641	-1.0789	-0.00049868	462.2276154833383	140.15	0.73911	139.11	138.89	139.63	-1.0339					25	14	2	0	0	0	0.73938	1	11535	11535		31.955	1.4512	1	50719	+		63120	18336	52062	52112	69249	69249					-0.02471084753199193
VVRALGMLL	9	Unmodified	_VVRALGMLL_					0	0	0			REV__ENSG00000178301|ENST00000313578|AQP11	REV__ENSG00000178301|ENST00000313578|AQP11	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.3052673339844	2	486.307155	970.599758	0.016353	7.9527E-06	-3.8582	-0.0018763	-3.8419	-0.0018683	486.3051966587704	121.94	2.2082	120.59	120.11	122.32	-1.3479					102	43	4	0	0	0	0.58665	1	11522	11522		33.516	1.5607	1	873390	+		63121	22055	52063	52113	69250	69250					0.11328171710158585
VVRALGMLL	9	Unmodified	_VVRALGMLL_					0	0	0			REV__ENSG00000178301|ENST00000313578|AQP11	REV__ENSG00000178301|ENST00000313578|AQP11	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.30487060546875	2	486.307155	970.599758	-1.8727	-0.00091069	-2.2957	-0.0011164	-4.1684	-0.0020271	486.3060163931478	126.56	4.5912	125.14	124.48	129.07	-1.4143					192	91	5	0	0	0	0.58665	1	12148	12148		33.516	1.5607	1	3302400	+		63122	22055	52063	52113	69251	69251					0.11328171710158585
VVRASSGLK	9	Unmodified	_VVRASSGLK_					0	0	0		ENST00000417689.5_1_16:66968434-66968578:+|nuORF;ENST00000566182.1_1_16:66968434-66968817:+|nuORF	ENST00000417689.5_1_16:66968434-66968578:+|nuORF	ENST00000417689.5_1_16:66968434-66968578:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	458.78204345703125	2	458.782359	915.550165	-1.2943	-0.00059382	1.1634	0.00053377	-0.13089	-6.0052E-05	458.78281032572033	34.903	0.94068	32.193	31.959	32.9	-2.7097					33	18	2	0	0	0	0.47363	1	1368	1368		45.022	0.9054	1	153160			63123	11625	52064	52114	69252	69252					0.08901180025725353
VVRATGVVD	9	Unmodified	_VVRATGVVD_					0	0	0			REV__tr|A0A7D6ZI24|A0A7D6ZI24_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05380PE=4SV=1	REV__tr|A0A7D6ZI24|A0A7D6ZI24_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05380PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	457.3144836425781	2	458.266542	914.51853	-0.0078936	-3.6174E-06	1.2938	0.0005929	1.2859	0.00058928	458.26705633591286	71.581	0.52515	71.581	71.267	71.792	0					20	12	3	0	0	0	0.027462	1	6905	6905		35.618	8.8222	1	284700	+		63124	32045	52065	52115	69253	69253					0.05785187271771974
VVREHSIKL	9	Unmodified	_VVREHSIKL_					0	0	0			REV__LTR2B_dup112|chr5:139531087-139531564:+|5.616613063847069|0.2101401634115403|4.74|424.0|20|1|anti-sense	REV__LTR2B_dup112|chr5:139531087-139531564:+|5.616613063847069|0.2101401634115403|4.74|424.0|20|1|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	540.8314208984375	2	540.82984	1079.64513	-0.4469	-0.0002417	-0.057842	-3.1283E-05	-0.50474	-0.00027298	540.8297387248226	54.568	1.022	54.568	54.293	55.315	0					67	23	4	0	0	0	0.14998	1	4408	4408		84.916	2.165	1	7314400	+		63125	28629	52066	52116	69254	69254					0.10849113496897189
VVRFRVPFTT	10	Unmodified	_VVRFRVPFTT_					0	0	0			REV__nc|ENSG00000126838|P20742-2|PZP	REV__nc|ENSG00000126838|P20742-2|PZP	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3549194335938	2	611.358765	1220.70298	-2.725	-0.001666	-1.8334	-0.0011209	-4.5584	-0.0027868	611.3575283211214	150.83	4.6872	149.39	148.02	152.71	-1.4344					404	109	6	0	0	0	0.73378	1	15000	15000		26.693	5.746	1	435030	+		63126	28835	52067	52117	69255	69255					0.10145375422325742
VVRGDRPAV	9	Unmodified	_VVRGDRPAV_					0	0	0			REV__ENSG00000213445|ENST00000534313|SIPA1	REV__ENSG00000213445|ENST00000534313|SIPA1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.7524108886719	2	484.785433	967.556313	-1.0927	-0.00052974	-4.0281	-0.0019528	-5.1208	-0.0024825	484.78578858112036	44.502	0.50658	41.464	41.258	41.765	-3.0385					14	9	2	0	0	0	0.027462	1	2207	2207		27.882	7.8855	1	26638	+		63127	23259	52068	52118	69256	69256					0.07123698257225897
VVRHQLLKT	9	Unmodified	_VVRHQLLKT_					0	0	0		ENSG00000127184|ENST00000247655|COX7C;ENST00000511472.5_1_5:85913768-85915283:+|nuORF	ENSG00000127184|ENST00000247655|COX7C	ENSG00000127184|ENST00000247655|COX7C	MULTI-MSMS	OvCa99_classI_Rep5	1	547.3455810546875	2	547.345658	1092.67676	-0.7295	-0.00039929	0.16934	9.2687E-05	-0.56016	-0.0003066	547.3457294424909	36.141	1.1306	36.141	35.892	37.023	0					62	24	5	0	0	0	0.28934	2	1894	1872;1894		64.207	18.255	1	3935400			63128	3821	52069	52119	69257;69258	69258					0.13413106250845885
VVRIIYHN	8	Unmodified	_VVRIIYHN_					0	0	0			REV__ENST00000409714.7_1_2:170460711-170470975:+|nuORF	REV__ENST00000409714.7_1_2:170460711-170470975:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.29437255859375	2	507.298176	1012.5818	-1.3684	-0.00069421	-3.1065	-0.0015759	-4.475	-0.0022701	507.29654853374575	44.536	1.0187	41.498	41.056	42.075	-3.0385					53	19	4	0	0	0	0.028476	1	2171	2171		20.482	1.1219	1	145650	+		63129	25476	52070	52120	69259	69259					0.07601172779641274
VVRIIYHN	8	Unmodified	_VVRIIYHN_					0	0	0			REV__ENST00000409714.7_1_2:170460711-170470975:+|nuORF	REV__ENST00000409714.7_1_2:170460711-170470975:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	507.298176	1012.5818	-0.020257	-1.0276E-05	-4.4519	-0.0022584	-4.4722	-0.0022687	507.29598149422924	44.267	0.64757	41.558	41.353	42	-2.7097	0.029973	-0.0006609	NaN	20.482	21	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26923	+		63130	25476	52070	52120							0.07601172779641274
VVRIVPMPK	9	Unmodified	_VVRIVPMPK_					0	0	0			REV__nc|ENSG00000143367|Q9NNX1-3|TUFT1	REV__nc|ENSG00000143367|Q9NNX1-3|TUFT1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	520.2998657226562	2	519.828255	1037.64196	-1.135	-0.00059001	-2.374	-0.0012341	-3.509	-0.0018241	519.8257594115606	71.232	0.14762	67.775	67.677	67.825	-3.4563					4	2	2	0	0	0	0.027462	1	5420	5420		6.3127	0	1	9309	+		63131	19834	52071	52121	69260	69260					0.12464147118521396
VVRKFVHLL	9	Unmodified	_VVRKFVHLL_					0	0	0		ENSG00000140575|ENST00000268182|IQGAP1;ENST00000560020.1_1_15:91017736-91017973:+|nuORF	ENSG00000140575|ENST00000268182|IQGAP1	ENSG00000140575|ENST00000268182|IQGAP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.7854614257812	2	555.860944	1109.70733	1.4632	0.00081335	0.92206	0.00051254	2.3853	0.0013259	555.8612989352911	93.504	0.40921	93.504	93.305	93.714	0					14	9	2	0	0	0	0.027462	1	10146	10146		17.365	0	1	698540			63132	4862	52072	52122	69261	69261					0.15686884635897513
VVRKQRYVF	9	Unmodified	_VVRKQRYVF_					0	0	0		ENSG00000125965|ENST00000374369|GDF5	ENSG00000125965|ENST00000374369|GDF5	ENSG00000125965|ENST00000374369|GDF5	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.8564453125	2	597.858932	1193.70331	-0.38237	-0.0002286	-3.9169	-0.0023418	-4.2993	-0.0025704	597.8564103488146	145.14	4.0194	143.71	141.51	145.53	-1.4357					229	77	4	0	0	0	0.58665	1	14253	14253		33.516	8.0654	1	217250			63133	3756	52073	52123	69262	69262					0.11420795142157658
VVRLLELI	8	Unmodified	_VVRLLELI_					0	0	0		ENSG00000156804|ENST00000517956|FBXO32;ENST00000287396.2_1_8:124515615-124544254:-|nuORF;ENST00000521719.5_1_8:124526414-124553254:-|nuORF	ENSG00000156804|ENST00000517956|FBXO32	ENSG00000156804|ENST00000517956|FBXO32	MULTI-MSMS	OvCa99_classI_Rep5	1	477.82196044921875	2	477.820953	953.627353	1.1425	0.00054592	0.58727	0.00028061	1.7298	0.00082653	477.8210598571918	131.51	0.79417	131.51	131.25	132.04	0					34	16	3	0	0	0	0.56195	1	15265	15265		71.296	13.484	1	401890			63134	5858	52074	52124	69263	69263					0.14868398242026615
VVRLPVAPSP	10	Unmodified	_VVRLPVAPSP_					0	0	0			REV__nc|ENSG00000170322|Q6P4R8-3|NFRKB	REV__nc|ENSG00000170322|Q6P4R8-3|NFRKB	MULTI-MSMS	OvCa9_classI_Rep2	2	517.8193969726562	2	517.821484	1033.62842	-2.2306	-0.0011551	-1.8311	-0.0009482	-4.0617	-0.0021033	517.8203985316244	146.61	1.347	146.38	145.92	147.27	-0.22696					66	26	3	0	0	0	0.7759	1	14781	14781		21.96	1.4781	1	90796	+		63135	21531	52075	52125	69264	69264					0.11294612610936383
VVRPLVSLL	9	Unmodified	_VVRPLVSLL_					0	0	0		nc|ENSG00000140553|Q9H3U1-2|UNC45A;ENSG00000140553|ENST00000418476|UNC45A;nc|ENSG00000140553|Q9H3U1-3|UNC45A;ENST00000471780.1_1_15:91493362-91496943:+|nuORF;ENST00000487875.5_1_15:91491769-91496943:+|nuORF	nc|ENSG00000140553|Q9H3U1-2|UNC45A	nc|ENSG00000140553|Q9H3U1-2|UNC45A	MULTI-MSMS	OvCa9_classI_Rep3	3	498.3330383300781	2	498.334227	994.653902	1.2643	0.00063007	-1.8659	-0.00092985	-0.60157	-0.00029978	498.3332884380841	124.71	3.4398	123.66	123.27	126.71	-1.0519					179	65	5	0	0	0	0.38529	1	9742	9742		53.351	7.3995	1	3929400			63136	4859	52076	52126	69265	69265					0.15636087133384535
VVRPREWTV	9	Unmodified	_VVRPREWTV_					0	0	0			REV__nc|ENSG00000106278|P23471-2|PTPRZ1	REV__nc|ENSG00000106278|P23471-2|PTPRZ1	MULTI-SECPEP	OvCa99_classI_Rep5	1	570.3635864257812	2	571.327465	1140.64038	0.80615	0.00046058	1.7433	0.00099599	2.5494	0.0014566	571.3288935028855	157.6	0.50787	157.6	157.4	157.91	0					14	9	2	0	0	0	0.027462	1	18452	18452		15.642	0	1	24806	+		63137	17788	52077	52127	69266	69266					0.07568229354114919
VVRWLRLR	8	Unmodified	_VVRWLRLR_					0	0	0		ENST00000603271.1_3_19:58331137-58367481:+|nuORF;ENST00000593873.5_3_19:58331110-58369965:+|nuORF	ENST00000603271.1_3_19:58331137-58367481:+|nuORF	ENST00000603271.1_3_19:58331137-58367481:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.3353881835938	2	549.35636	1096.69817	-0.15157	-8.3266E-05	-2.4606	-0.0013518	-2.6122	-0.001435	549.3551946917585	31.004	0.24313	31.004	30.881	31.124	0					11	4	3	0	0	0	0.028476	1	1234	1234		20.482	0	1	83085			63138	14158	52078	52128	69267	69267					0.15368536070218397
VVSARVAPLS	10	Unmodified	_VVSARVAPLS_					0	0	0			REV__ENST00000509077.1_1_3:75378534-75378612:-|nuORF	REV__ENST00000509077.1_1_3:75378534-75378612:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	499.803955078125	2	499.803291	997.59203	-0.79283	-0.00039626	0.56419	0.00028199	-0.22863	-0.00011427	499.803503863494	58.325	1.5782	55.54	55.08	56.658	-2.7844					54	30	2	0	0	0	0.55359	1	4186	4186		47.657	1.7054	1	917370	+		63139	26921	52079	52129	69268	69268					0.09313735714226823
VVSDILFKI	9	Unmodified	_VVSDILFKI_					0	0	0		nc|ENSG00000167202|Q9UPU7-2|TBC1D2B;ENSG00000167202|ENST00000300584|TBC1D2B;ENST00000472786.1_1_15:78295640-78309087:-|nuORF;nc|ENSG00000167202|Q9UPU7-3|TBC1D2B	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	nc|ENSG00000167202|Q9UPU7-2|TBC1D2B	MULTI-MSMS	OvCa99_classI_Rep5	1	517.3200073242188	2	517.318243	1032.62193	1.3683	0.00070784	0.63211	0.000327	2.0004	0.0010348	517.3184716386397	126.74	1.4421	126.74	126.42	127.86	0					68	31	4	0	0	0	0.083631	2	14675	14651;14675		101.6	30.305	1	1608900			63140	6770	52080	52130	69269;69270	69270					0.10692674659571821
VVSFANQL	8	Unmodified	_VVSFANQL_					0	0	0			REV__ENSG00000171798|ENST00000304613|KNDC1	REV__ENSG00000171798|ENST00000304613|KNDC1	MULTI-MSMS	OvCa99_classI_Rep5	1	439.2438659667969	2	439.242535	876.470518	3.4016	0.0014941	-1.026	-0.00045067	2.3755	0.0010434	439.2419716960242	84.185	0.50768	84.185	83.965	84.472	0					20	11	2	0	0	0	0.45246	1	8791	8791		82.305	8.3303	1	781420	+		63141	21646	52081	52131	69271	69271					0.027341133516983973
VVSFANQL	8	Unmodified	_VVSFANQL_					0	0	0			REV__ENSG00000171798|ENST00000304613|KNDC1	REV__ENSG00000171798|ENST00000304613|KNDC1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	439.242535	876.470518	3.4016	0.0014941	-1.026	-0.00045067	2.3755	0.0010434	439.2419716960242	84.185	0.50768	84.185	83.965	84.472	0	-0.19263	-0.0012079	NaN	82.305	20	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	781420	+		63142	21646	52081	52131							0.027341133516983973
VVSFANQL	8	Unmodified	_VVSFANQL_					0	0	0			REV__ENSG00000171798|ENST00000304613|KNDC1	REV__ENSG00000171798|ENST00000304613|KNDC1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	439.242535	876.470518	-0.71638	-0.00031467	1.1295	0.00049614	0.41316	0.00018148	439.24294767332555	86.529	1.7789	84.353	84.081	85.86	-2.1768	-0.025327	0.00068572	NaN	82.305	55	34	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112700	+		63143	21646	52081	52131							0.027341133516983973
VVSFANQL	8	Unmodified	_VVSFANQL_					0	0	0			REV__ENSG00000171798|ENST00000304613|KNDC1	REV__ENSG00000171798|ENST00000304613|KNDC1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	439.242535	876.470518	-0.58604	-0.00025742	0.3758	0.00016507	-0.21025	-9.235E-05	439.242572114577	87.223	1.2542	84.596	84.3	85.554	-2.6269	0.21796	2.3565E-05	NaN	82.305	38	24	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88152	+		63144	21646	52081	52131							0.027341133516983973
VVSGPGLIHAL	11	Unmodified	_VVSGPGLIHAL_					0	0	0		nc|ENSG00000131373|Q9UJ83-3|HACL1;nc|ENSG00000131373|Q9UJ83-4|HACL1;ENSG00000131373|ENST00000321169|HACL1	nc|ENSG00000131373|Q9UJ83-3|HACL1	nc|ENSG00000131373|Q9UJ83-3|HACL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.2647705078125	2	531.818941	1061.62333	-1.1779	-0.00062645	-2.4853	-0.0013217	-3.6633	-0.0019482	531.8174324411541	143.51	1.0399	142.07	141.59	142.63	-1.4427					26	19	2	0	0	0	0.025681	1	14012	14012		26.693	4.733	1	22928			63145	4057	52082	52132	69272	69272					0.09498308748334239
VVSGPGLIHAL	11	Unmodified	_VVSGPGLIHAL_					0	0	0		nc|ENSG00000131373|Q9UJ83-3|HACL1;nc|ENSG00000131373|Q9UJ83-4|HACL1;ENSG00000131373|ENST00000321169|HACL1	nc|ENSG00000131373|Q9UJ83-3|HACL1	nc|ENSG00000131373|Q9UJ83-3|HACL1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	531.818941	1061.62333	-2.4212	-0.0012876	-1.5282	-0.00081274	-3.9494	-0.0021004	531.818119718619	143.11	0.98758	142.12	141.45	142.44	-0.9903	0.027304	0.00042918	NaN	26.693	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18487			63146	4057	52082	52132							0.09498308748334239
VVSGRADEKL	10	Unmodified	_VVSGRADEKL_					0	0	0			REV__ENSG00000135144|ENST00000548759|DTX1	REV__ENSG00000135144|ENST00000548759|DTX1	MULTI-MSMS	OvCa99_classI_Rep5	1	537.3021240234375	2	537.301113	1072.58767	-0.28006	-0.00015048	-0.15346	-8.2453E-05	-0.43352	-0.00023293	537.3008349148846	42.818	0.56152	42.818	42.624	43.185	0					29	12	4	0	0	0	0.48398	1	2792	2792		56.434	6.9922	1	1183400	+		63147	19263	52083	52133	69273	69273					0.05428226500657729
VVSGRHEEWL	10	Unmodified	_VVSGRHEEWL_					0	0	0			REV__ENSG00000013561|ENST00000394520|RNF14	REV__ENSG00000013561|ENST00000394520|RNF14	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3150634765625	2	606.312012	1210.60947	1.4419	0.00087425	1.3167	0.00079836	2.7587	0.0016726	606.3127462529834	98.31	1.5865	96.55	95.913	97.5	-1.7595					93	30	4	0	0	0	0.59317	1	6560	6560		42.864	5.0528	1	683280	+		63148	16508	52084	52134	69274	69274					0.012590312492420708
VVSGSSYRVWG	11	Unmodified	_VVSGSSYRVWG_					0	0	0			REV__nc|ENSG00000225697|Q9BXS9-6|SLC26A6	REV__nc|ENSG00000225697|Q9BXS9-6|SLC26A6	MULTI-MSMS	OvCa9_classI_Rep2	2	598.8074951171875	2	598.806562	1195.59857	-0.27081	-0.00016216	3.8286	0.0022926	3.5578	0.0021304	598.8089070417255	110.82	1.5782	110.68	110.34	111.91	-0.13961					110	31	5	0	0	0	0.60323	1	10461	10461		44.377	0.26039	1	950560	+		63149	29139	52085	52135	69275	69275					0.008596288749458836
VVSHNRSL	8	Unmodified	_VVSHNRSL_					0	0	0		ENST00000587396.1_1_18:47813113-47813998:-|nuORF	ENST00000587396.1_1_18:47813113-47813998:-|nuORF	ENST00000587396.1_1_18:47813113-47813998:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	456.268798828125	2	456.256508	910.498464	-0.2341	-0.00010681	-2.1618	-0.00098631	-2.3958	-0.0010931	456.2554288318059	40.502	0.62933	40.502	40.34	40.969	0					21	13	2	0	0	0	0.028476	1	2494	2494		31.955	0	1	192460			63150	14061	52086	52136	69276	69276					0.039634363317986754
VVSIELSEDQS	11	Unmodified	_VVSIELSEDQS_					0	0	0		ENSG00000174145|ENST00000309447|NWD2	ENSG00000174145|ENST00000309447|NWD2	ENSG00000174145|ENST00000309447|NWD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	603.8462524414062	2	603.298433	1204.58231	-0.2055	-0.00012398	4.3521	0.0026256	4.1466	0.0025016	603.3008094271757	55.792	0.49259	55.792	55.559	56.052	0					32	11	4	0	0	0	0.025466	1	4572	4572		56.434	30.37	1	1175600			63151	7442	52087	52137	69277	69277					-0.011795418724886986
VVSIELSEDQS	11	Unmodified	_VVSIELSEDQS_					0	0	0		ENSG00000174145|ENST00000309447|NWD2	ENSG00000174145|ENST00000309447|NWD2	ENSG00000174145|ENST00000309447|NWD2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	603.298433	1204.58231	0.681	0.00041085	4.7457	0.002863	5.4267	0.0032739	603.3016222891483	59.202	0.74553	55.81	55.502	56.248	-3.392	0.0089327	0.00042967	NaN	56.434	26	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31907			63152	7442	52087	52137							-0.011795418724886986
VVSIHKKFG	9	Unmodified	_VVSIHKKFG_					0	0	0		tr|A0A7D7A3Q3|A0A7D7A3Q3_9CLOTUDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamineN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=pseHPE=4SV=1	tr|A0A7D7A3Q3|A0A7D7A3Q3_9CLOTUDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamineN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=pseHPE=4SV=1	tr|A0A7D7A3Q3|A0A7D7A3Q3_9CLOTUDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamineN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=pseHPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	508.80377197265625	2	507.808377	1013.6022	-0.88644	-0.00045014	1.823	0.00092574	0.93658	0.0004756	508.312095674546	75.083	0.9359	72.672	72.241	73.177	-2.4106					18	15	2	0	0	0	0.027462	1	3725	3725		37.159	12.956	1	13168			63153	36125	52088	52138	69278	69278					0.09594343439471231
VVSIHKKFG	9	Unmodified	_VVSIHKKFG_					0	0	0		tr|A0A7D7A3Q3|A0A7D7A3Q3_9CLOTUDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamineN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=pseHPE=4SV=1	tr|A0A7D7A3Q3|A0A7D7A3Q3_9CLOTUDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamineN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=pseHPE=4SV=1	tr|A0A7D7A3Q3|A0A7D7A3Q3_9CLOTUDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamineN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=pseHPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	507.808377	1013.6022	-0.78898	-0.00040065	-2.6362	-0.0013387	-3.4251	-0.0017393	507.80584525429833	75.021	0.35942	73.05	72.847	73.206	-1.9711	0.10801	-0.00090685	NaN	37.159	10	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7622.9			63154	36125	52088	52138							0.09594343439471231
VVSIHKKFG	9	Unmodified	_VVSIHKKFG_					0	0	0		tr|A0A7D7A3Q3|A0A7D7A3Q3_9CLOTUDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamineN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=pseHPE=4SV=1	tr|A0A7D7A3Q3|A0A7D7A3Q3_9CLOTUDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamineN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=pseHPE=4SV=1	tr|A0A7D7A3Q3|A0A7D7A3Q3_9CLOTUDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamineN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=pseHPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	507.808377	1013.6022	-0.30091	-0.00015281	-3.8912	-0.001976	-4.1921	-0.0021288	508.3089559209374	76.043	0.23744	73.104	73.033	73.27	-2.9389	0.16204	-0.0021815	NaN	37.159	5	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5070.4			63155	36125	52088	52138							0.09594343439471231
VVSIPKLESR	10	Unmodified	_VVSIPKLESR_					0	0	0		tr|A0A553SP06|A0A553SP06_NIACITyrosinerecombinaseXerCOS=NialliacirculansOX=1397GN=xerCPE=3SV=1	tr|A0A553SP06|A0A553SP06_NIACITyrosinerecombinaseXerCOS=NialliacirculansOX=1397GN=xerCPE=3SV=1	tr|A0A553SP06|A0A553SP06_NIACITyrosinerecombinaseXerCOS=NialliacirculansOX=1397GN=xerCPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	563.8224487304688	2	564.342781	1126.67101	-0.39261	-0.00022157	-0.61272	-0.00034579	-1.0053	-0.00056735	564.3421281191606	76.912	0.98825	75.123	74.582	75.571	-1.7894					35	18	3	0	0	0	0.026782	1	6363	6363		30.318	1.1477	1	53319			63156	33989	52089	52139	69279	69279					0.11273962948507688
VVSKTPIYRTT	11	Unmodified	_VVSKTPIYRTT_					0	0	0		tr|A0A553SJ73|A0A553SJ73_NIACICadherin-likebetasandwichdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16270PE=4SV=1	tr|A0A553SJ73|A0A553SJ73_NIACICadherin-likebetasandwichdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16270PE=4SV=1	tr|A0A553SJ73|A0A553SJ73_NIACICadherin-likebetasandwichdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_16270PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	421.2662353515625	3	422.246839	1263.71869	-1.1143	-0.00047052	-1.3485	-0.00056939	-2.4628	-0.0010399	422.24630111153226	41.01	1.8778	38.056	37.315	39.193	-2.9541					54	35	2	0	0	0	0.025624	1	1783	1783		32.034	6.9081	1	13937			63157	33469	52090	52140	69280	69280					0.09737617148698519
VVSLIVFWTT	10	Unmodified	_VVSLIVFWTT_					0	0	0			REV__ENSG00000134780|ENST00000257215|DAGLA	REV__ENSG00000134780|ENST00000257215|DAGLA	MULTI-SECPEP	OvCa9_classI_Rep4_	4	583.6864013671875	2	582.8368	1163.65905	-0.95173	-0.00055471	1.065	0.00062074	0.11329	6.6032E-05	582.8376347505806	20.658	0.69285	19.319	18.902	19.595	-1.3386					15	13	2	0	0	0	0.02725	1	39	39		21.96	1.013	1	9989.8	+		63158	19234	52091	52141	69281	69281					0.08376346205318441
VVSMACVGLFL	11	Carbamidomethyl (C)	_VVSMAC(Carbamidomethyl (C))VGLFL_	VVSMAC(1)VGLFL		VVSMAC(69)VGLFL		0	1	0		nc|ENSG00000167633|P43629-2|KIR3DL1;ENSG00000167633|ENST00000391728|KIR3DL1	nc|ENSG00000167633|P43629-2|KIR3DL1	nc|ENSG00000167633|P43629-2|KIR3DL1	MULTI-MSMS	OvCa9_classI_Rep3	3	598.315185546875	2	598.31432	1194.61409	1.4194	0.00084925	1.1166	0.00066805	2.536	0.0015173	598.315419282376	108.54	8.5813	107.34	106.85	115.43	-1.1978					384	169	6	0	0	0	0.29488	1	7970	7970		68.787	7.8149	1	23942000			63159	6818	52092	52142	69282	69282	68				0.024564560761064058
VVSMIFVP	8	Unmodified	_VVSMIFVP_					0	0	0		ENSG00000255713|ENST00000545221|OR4D2	ENSG00000255713|ENST00000545221|OR4D2	ENSG00000255713|ENST00000545221|OR4D2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	447.2410583496094	2	446.254057	890.493561	0.47455	0.00021177	3.6734	0.0016393	4.1479	0.001851	446.25555965321524	59.794	2.1308	56.402	55.451	57.582	-3.392					88	42	4	0	0	0	0.028476	1	4028	4028		35.201	18.496	1	314220			63160	9461	52093	52143	69283	69283					0.043934161448191844
VVSPIKGSP	9	Unmodified	_VVSPIKGSP_					0	0	0		tr|A0A553SQ53|A0A553SQ53_NIACIPDZdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20650PE=3SV=1	tr|A0A553SQ53|A0A553SQ53_NIACIPDZdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20650PE=3SV=1	tr|A0A553SQ53|A0A553SQ53_NIACIPDZdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_20650PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	442.2670593261719	2	442.26601	882.517468	-0.55069	-0.00024355	0.38544	0.00017047	-0.16526	-7.3087E-05	442.26593561826763	62.879	2.7177	59.421	58.57	61.288	-3.4577					114	55	4	0	0	0	0.31747	1	4377	4377		60.972	3.1607	1	936690			63161	34120	52094	52144	69284	69284					0.07150972902854846
VVSQLAKRNL	10	Unmodified	_VVSQLAKRNL_					0	0	0		nc|ENSG00000100890|O15091-4|PRORP;nc|ENSG00000100890|O15091-2|PRORP;ENSG00000100890|ENST00000534898|PRORP;nc|ENSG00000100890|O15091-3|PRORP	nc|ENSG00000100890|O15091-4|PRORP	nc|ENSG00000100890|O15091-4|PRORP	MULTI-MSMS	OvCa9_classI_Rep3	3	564.3497924804688	2	564.348397	1126.68224	-0.90795	-0.0005124	4.2407	0.0023932	3.3328	0.0018808	564.3506646111761	134.7	0.74165	133.58	133.31	134.05	-1.1226					28	14	3	0	0	0	0.79917	1	10872	10872		19.104	0	1	39657			63162	2117	52095	52145	69285	69285					0.12396785042665215
VVSRAARRH	9	Unmodified	_VVSRAARRH_					0	0	0		ENST00000487632.5_1_3:50387870-50388140:-|nuORF	ENST00000487632.5_1_3:50387870-50388140:-|nuORF	ENST00000487632.5_1_3:50387870-50388140:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.2932739257812	2	526.315223	1050.61589	-1.3002	-0.00068431	4.0797	0.0021472	2.7795	0.0014629	526.3170565866451	40.462	0.94045	37.508	37.213	38.153	-2.9541					30	17	3	0	0	0	0.027461	1	1739	1739		49.442	3.4896	1	20876			63163	12651	52096	52146	69286	69286					0.09261013991249456
VVSSVTTKV	9	Unmodified	_VVSSVTTKV_					0	0	0		ENST00000499638.6_1_12:121647946-121660004:+|nuORF;nc|ENSG00000135124|Q99571-3|P2RX4;ENSG00000135124|ENST00000337233|P2RX4;nc|ENSG00000135124|Q99571-2|P2RX4	ENST00000499638.6_1_12:121647946-121660004:+|nuORF	ENST00000499638.6_1_12:121647946-121660004:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	460.2779541015625	2	460.276575	918.538597	-0.63216	-0.00029097	0.6958	0.00032026	0.063642	2.9293E-05	460.2767639465841	53.324	0.88636	53.324	53.043	53.929	0					49	20	4	0	0	0	0.075543	1	4229	4229		104.06	20.77	1	2584700			63164	4356	52097	52147	69287	69287					0.07606938211711167
VVSTKSLEASF	11	Unmodified	_VVSTKSLEASF_					0	0	0			REV__RTN4-KIAA0196|2|fusion;REV__ENSG00000115310|ENST00000337526|RTN4	REV__ENSG00000115310|ENST00000337526|RTN4	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.31591796875	2	584.316428	1166.6183	0.15167	8.8621E-05	0.82377	0.00048134	0.97544	0.00056996	584.3168907797178	34.71	2.55	31.922	31.249	33.799	-2.7881					139	50	5	0	0	0	0.69808	1	1151	1151		30.318	4.7437	1	1289200	+		63165	18235;29346	52098	52148	69288	69288					0.04165960095042465
VVSTNKKK	8	Unmodified	_VVSTNKKK_					0	0	0			REV__ENST00000374279.3_1_9:114695413-114695467:+|nuORF	REV__ENST00000374279.3_1_9:114695413-114695467:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	452.2859191894531	2	452.284734	902.554916	0.79908	0.00036141	-2.9996	-0.0013567	-2.2005	-0.00099525	452.2831496497707	47.481	2.9264	44.373	44.082	47.008	-3.1077					143	56	4	0	0	0	0.72896	1	2656	2656		37.159	1.9584	1	3311000	+		63166	25060	52099	52149	69289	69289					0.09974064168466157
VVSVMGPGW	9	Unmodified	_VVSVMGPGW_					0	0	0			REV__nc|ENSG00000105426|Q13332-7|PTPRS	REV__nc|ENSG00000105426|Q13332-7|PTPRS	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.2379455566406	2	466.238938	930.463324	-1.071	-0.00049935	-3.2099	-0.0014966	-4.2809	-0.0019959	466.23740207591294	43.973	3.6033	40.966	40.22	43.824	-3.0074					174	69	4	0	0	0	0.50066	1	2217	2217		42.474	3.6683	1	2152800	+		63167	17725	52100	52150	69290	69290					-0.004689425203537212
VVSVVIPPGR	10	Unmodified	_VVSVVIPPGR_					0	0	0		ENST00000543290.1_1_12:1099621-1099747:-|nuORF	ENST00000543290.1_1_12:1099621-1099747:-|nuORF	ENST00000543290.1_1_12:1099621-1099747:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	511.2702941894531	2	511.821484	1021.62842	-0.87894	-0.00044986	0.54142	0.00027711	-0.33753	-0.00017275	511.8214869791123	69.787	1.3133	66.306	66.009	67.322	-3.4812					53	26	3	0	0	0	0.026734	1	5302	5302		56.721	25.191	1	122530			63168	13493	52101	52151	69291	69291					0.11846612610952434
VVSVVIPPGR	10	Unmodified	_VVSVVIPPGR_					0	0	0		ENST00000543290.1_1_12:1099621-1099747:-|nuORF	ENST00000543290.1_1_12:1099621-1099747:-|nuORF	ENST00000543290.1_1_12:1099621-1099747:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	511.821484	1021.62842	-0.8528	-0.00043648	0.72651	0.00037184	-0.12629	-6.464E-05	511.8215193088878	68.733	1.3447	66.113	65.819	67.164	-2.6203	-0.061958	0.00020886	NaN	56.721	56	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	103630			63169	13493	52101	52151							0.11846612610952434
VVSVVIPPGR	10	Unmodified	_VVSVVIPPGR_					0	0	0		ENST00000543290.1_1_12:1099621-1099747:-|nuORF	ENST00000543290.1_1_12:1099621-1099747:-|nuORF	ENST00000543290.1_1_12:1099621-1099747:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	511.821484	1021.62842	0.77588	0.00039711	0.031317	1.6029E-05	0.8072	0.00041314	511.8209612886502	68.919	0.94804	66.105	65.813	66.761	-2.8143	-0.069511	-0.00050277	NaN	56.721	39	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31799			63170	13493	52101	52151							0.11846612610952434
VVTANHRALQI	11	Unmodified	_VVTANHRALQI_					0	0	0		nc|ENSG00000165219|Q14C86-5|GAPVD1;ENSG00000165219|ENST00000297933|GAPVD1;nc|ENSG00000165219|Q14C86|GAPVD1;nc|ENSG00000165219|Q14C86-6|GAPVD1;nc|ENSG00000165219|Q14C86-3|GAPVD1;nc|ENSG00000165219|Q14C86-4|GAPVD1;ENST00000467707.1_1_9:128116999-128121864:+|nuORF;ENST00000474637.5_1_9:128108952-128125022:+|nuORF;RALGPS1-GAPVD1|1|fusion	nc|ENSG00000165219|Q14C86-5|GAPVD1;RALGPS1-GAPVD1|1|fusion	nc|ENSG00000165219|Q14C86-5|GAPVD1	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3555297851562	2	611.356754	1220.69895	-3.1571	-0.0019301	2.0725	0.001267	-1.0847	-0.00066312	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.68021	1	12924	12924		36.447	11.928	1	666990			63171	6537;15540	52102	52152	69292	69292					0.09743285928584555
VVTAPKTL	8	Unmodified	_VVTAPKTL_					0	0	0		sp|P16729|MCP_HCMVAMajorcapsidproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=MCPPE=1SV=1;sp|F5HGT1|MCP_HCMVMMajorcapsidproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=MCPPE=3SV=1	sp|P16729|MCP_HCMVAMajorcapsidproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=MCPPE=1SV=1	sp|P16729|MCP_HCMVAMajorcapsidproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=MCPPE=1SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.7621154785156	2	414.763104	827.511654	0.81	0.00033596	-4.0428	-0.0016768	-3.2328	-0.0013408	414.7613377091018	141.2	2.8207	139.74	138.79	141.61	-1.4627					131	54	4	0	0	0	0.7224	2	13829	13781;13829		38.806	3.7075	1	1536400			63172	32876	52103	52153	69293;69294	69294					0.09099874391188223
VVTAQTILLI	10	Unmodified	_VVTAQTILLI_					0	0	0		tr|A0A7D6ZYY3|A0A7D6ZYY3_9CLOTSdpIfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03895PE=4SV=1	tr|A0A7D6ZYY3|A0A7D6ZYY3_9CLOTSdpIfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03895PE=4SV=1	tr|A0A7D6ZYY3|A0A7D6ZYY3_9CLOTSdpIfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03895PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.3479614257812	2	535.844625	1069.6747	1.5737	0.00084327	-2.6246	-0.0014064	-1.0509	-0.00056309	535.8426366099395	133.3	0.27043	133.3	133.13	133.4	0					8	5	2	0	0	0	0.02717	1	15503	15503		23.523	13.817	1	71359			63173	35936	52104	52154	69295	69295					0.14264632722370152
VVTAVINI	8	Unmodified	_VVTAVINI_					0	0	0			REV__ENSG00000166535|ENST00000299698|A2ML1	REV__ENSG00000166535|ENST00000299698|A2ML1	MULTI-MSMS	OvCa9_classI_Rep3	3	414.76153564453125	2	414.763104	827.511654	-1.3763	-0.00057084	-1.7682	-0.00073337	-3.1445	-0.0013042	414.7623056204016	140.83	3.4972	139.8	137.66	141.16	-1.0339					138	70	4	0	0	0	0.71369	1	11645	11645		40.573	3.4135	1	1080700	+		63174	21205	52105	52155	69296	69296					0.09099874391165486
VVTAVKFTI	9	Unmodified	_VVTAVKFTI_					0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1;ENST00000540319.5_1_12:67701199-67704144:+|nuORF	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	MULTI-MSMS	OvCa99_classI_Rep5	1	489.3060302734375	2	489.305136	976.595718	1.9131	0.0009361	0.01595	7.8046E-06	1.9291	0.00094391	489.3050427763718	102.19	0.63648	102.19	101.91	102.55	0					24	14	2	0	0	0	0.043101	1	11387	11387		124.08	57.651	1	2604100			63175	2828	52106	52156	69297	69297					0.10648405488097978
VVTDRIVVD	9	Unmodified	_VVTDRIVVD_					0	0	0		tr|A0A7D7A424|A0A7D7A424_9CLOTDabbfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01555PE=4SV=1	tr|A0A7D7A424|A0A7D7A424_9CLOTDabbfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01555PE=4SV=1	tr|A0A7D7A424|A0A7D7A424_9CLOTDabbfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01555PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.3230895996094	2	508.292756	1014.57096	2.2213	0.0011291	1.7885	0.00090907	4.0097	0.0020381	508.29354742847187	82.731	0.55505	82.731	82.437	82.992	0					25	12	3	0	0	0	0.027433	1	8540	8540		54.776	0	1	569830			63176	36134	52107	52157	69298	69298					0.06425725614712974
VVTGGILGL	9	Unmodified	_VVTGGILGL_					0	0	0		L1MA1_dup882|chr3:174894625-174897831:+|1.387705056550523|0.3345806313734131|2.05|429.0|194|3|anti-sense	L1MA1_dup882|chr3:174894625-174897831:+|1.387705056550523|0.3345806313734131|2.05|429.0|194|3|anti-sense	L1MA1_dup882|chr3:174894625-174897831:+|1.387705056550523|0.3345806313734131|2.05|429.0|194|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.7623596191406	2	414.763104	827.511654	0.81	0.00033596	-4.0428	-0.0016768	-3.2328	-0.0013408	414.7613377091018	141.2	2.8207	139.74	138.79	141.61	-1.4627					131	54	4	0	0	0	0.63108	1	13841	13841		28.254	7.7724	1	1536400			63177	14571	52108	52158	69299	69299					0.09099874391188223
VVTGVSVAF	9	Unmodified	_VVTGVSVAF_					0	0	0		nc|ENSG00000105609|O75023-2|LILRB5;nc|ENSG00000105609|O75023|LILRB5;ENSG00000105609|ENST00000449561|LILRB5	nc|ENSG00000105609|O75023-2|LILRB5	nc|ENSG00000105609|O75023-2|LILRB5	MULTI-MSMS	OvCa9_classI_Rep4_	4	439.75244140625	2	439.752736	877.490919	-0.33281	-0.00014636	1.1355	0.00049934	0.80268	0.00035298	439.752942214024	104.82	1.3132	102.7	102.43	103.74	-2.1192					51	25	4	0	0	0	0.25214	1	9496	9496		68.485	0	1	220940			63178	2473	52109	52159	69300	69300					0.047272840115169856
VVTGVSVAF	9	Unmodified	_VVTGVSVAF_					0	0	0		nc|ENSG00000105609|O75023-2|LILRB5;nc|ENSG00000105609|O75023|LILRB5;ENSG00000105609|ENST00000449561|LILRB5	nc|ENSG00000105609|O75023-2|LILRB5	nc|ENSG00000105609|O75023-2|LILRB5	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	439.752736	877.490919	0.67889	0.00029855	-0.077368	-3.4023E-05	0.60153	0.00026452	439.7524642053137	104.1	1.1438	102.67	102.39	103.54	-1.4347	-0.03638	-0.00037368	NaN	68.485	53	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	231150			63179	2473	52109	52159							0.047272840115169856
VVTLKQACI	9	Unmodified	_VVTLKQACI_					0	0	0		ENSG00000144136|ENST00000272542|SLC20A1	ENSG00000144136|ENST00000272542|SLC20A1	ENSG00000144136|ENST00000272542|SLC20A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.78997802734375	2	487.788795	973.563038	3.5562	0.0017347	-0.73408	-0.00035808	2.8221	0.0013766	487.7882512057077	132.82	4.8462	131.32	130.38	135.22	-1.5015					236	97	4	0	0	0	0.5811	1	12729	12729		34.173	1.3601	1	143240			63180	5132	52110	52160	69301	69301					0.07519875093566952
VVTLLKDLN	9	Unmodified	_VVTLLKDLN_					0	0	0		tr|A0A553SRM2|A0A553SRM2_NIACIIron-containingalcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_01365PE=4SV=1	tr|A0A553SRM2|A0A553SRM2_NIACIIron-containingalcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_01365PE=4SV=1	tr|A0A553SRM2|A0A553SRM2_NIACIIron-containingalcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_01365PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.81182861328125	2	507.813325	1013.6121	-3.7776	-0.0019183	3.6163	0.0018364	-0.16133	-8.1927E-05	507.8150097852563	152.29	1.1068	150.85	150.6	151.71	-1.435					49	23	3	0	0	0	0.63422	1	15054	15054		27.882	1.0861	1	90122			63181	34276	52111	52161	69302	69302					0.10583486654172702
VVTLMTVDL	9	Unmodified	_VVTLMTVDL_					0	0	0		ENST00000394275.6_1_15:91477270-91478348:+|nuORF	ENST00000394275.6_1_15:91477270-91478348:+|nuORF	ENST00000394275.6_1_15:91477270-91478348:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	495.7821960449219	2	495.780636	989.546719	0.42466	0.00021054	0.78942	0.00039138	1.2141	0.00060192	495.78083557519824	44.24	1.6407	41.53	40.906	42.547	-2.7097					89	32	4	0	0	0	0.61208	1	2515	2515		30.504	0	1	198360			63182	11262	52112	52162	69303	69303					0.051527491368233314
VVTLYWKV	8	Unmodified	_VVTLYWKV_					0	0	0			REV__L1MB3_dup1513|chr1:246270299-246273131:-|1.1805691521590191|0.3959605958472513|1.58|429.0|186|3|anti-sense	REV__L1MB3_dup1513|chr1:246270299-246273131:-|1.1805691521590191|0.3959605958472513|1.58|429.0|186|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	504.2969970703125	2	504.299853	1006.58515	-0.082287	-4.1497E-05	-4.349	-0.0021932	-4.4313	-0.0022347	504.2976378271559	104.41	3.9037	102.97	102.5	106.4	-1.4347					184	75	5	0	0	0	0.66704	1	7352	7352		50.025	12.865	1	927760	+		63183	28414	52113	52163	69304	69304					0.08212422833662458
VVTNAIVL	8	Unmodified	_VVTNAIVL_					0	0	0		tr|A0A553SF65|A0A553SF65_NIACIEffluxRNDtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08280PE=4SV=1	tr|A0A553SF65|A0A553SF65_NIACIEffluxRNDtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08280PE=4SV=1	tr|A0A553SF65|A0A553SF65_NIACIEffluxRNDtransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_08280PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.761962890625	2	414.763104	827.511654	0.81	0.00033596	-4.0428	-0.0016768	-3.2328	-0.0013408	414.7613377091018	141.2	2.8207	139.74	138.79	141.61	-1.4627					131	54	4	0	0	0	0.74229	1	13806	13806		30.504	1.3541	1	1536400			63184	32996	52114	52164	69305	69305					0.09099874391165486
VVTTTLSPL	9	Unmodified	_VVTTTLSPL_					0	0	0			REV__nc|ENSG00000168916|Q9ULD9-2|ZNF608	REV__nc|ENSG00000168916|Q9ULD9-2|ZNF608	MULTI-MSMS	OvCa9_classI_Rep4_	4	465.77777099609375	2	465.778951	929.543348	2.0038	0.00093333	-4.2157	-0.0019636	-2.2119	-0.0010302	465.77638441145956	130.09	6.1548	128.62	125.6	131.75	-1.4779					205	123	4	0	0	0	0.53957	1	12682	12682		38.806	1.647	1	56999	+		63185	21416	52115	52165	69306	69306					0.07575822354476713
VVTVKRKAR	9	Unmodified	_VVTVKRKAR_					0	0	0			REV__ENST00000556933.1_1_14:65067322-65068336:-|nuORF	REV__ENST00000556933.1_1_14:65067322-65068336:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.7978515625	2	528.85365	1055.69275	-1.6825	-0.00088978	3.939	0.0020831	2.2565	0.0011933	528.855575195137	99.705	1.4874	97.379	97.055	98.543	-2.3253					57	28	3	0	0	0	0.027462	1	8886	8886		25.45	3.7478	1	69204	+		63186	26829	52116	52166	69307	69307					0.16712812487730844
VVTVNASKE	9	Unmodified	_VVTVNASKE_					0	0	0		nc|ENSG00000004399|Q9Y4D7-2|PLXND1;ENSG00000004399|ENST00000324093|PLXND1;PLXND1|p.E1457*|1|0.09|ENSG00000004399|chr3:129565492-129565493|-/A|frameshift_variant	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	nc|ENSG00000004399|Q9Y4D7-2|PLXND1	MULTI-MSMS	OvCa99_classI_Rep5	1	473.7646789550781	2	473.763832	945.513111	-0.59409	-0.00028146	1.1325	0.00053654	0.53842	0.00025508	473.764393322028	39.779	2.609	39.779	39.547	42.156	0					136	58	4	0	0	0	0.38969	1	2404	2404		52.937	1.744	1	28423000			63187	825	52117	52167	69308	69308					0.03817463689279066
VVVAISQI	8	Unmodified	_VVVAISQI_					0	0	0		ENSG00000249581|ENST00000511148|CLRN2	ENSG00000249581|ENST00000511148|CLRN2	ENSG00000249581|ENST00000511148|CLRN2	MULTI-MSMS	OvCa9_classI_Rep3	3	414.7613830566406	2	414.763104	827.511654	-1.3763	-0.00057084	-1.7682	-0.00073337	-3.1445	-0.0013042	414.7623056204016	140.83	3.4972	139.8	137.66	141.16	-1.0339					138	70	4	0	0	0	0.73626	1	11657	11657		33.516	0	1	1080700			63188	9411	52118	52168	69309	69309					0.09099874391188223
VVVALQMIRHL	11	Unmodified	_VVVALQMIRHL_					0	0	0			REV__SBF2|p.L1514Ffs*17|1|0.21|ENSG00000133812|chr11:9795861-9795862|-/TTGGGGATGTTGCCTGGACCTTGGAA|frameshift_variant	REV__SBF2|p.L1514Ffs*17|1|0.21|ENSG00000133812|chr11:9795861-9795862|-/TTGGGGATGTTGCCTGGACCTTGGAA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	426.9304504394531	3	426.928676	1277.7642	2.0965	0.00089507	2.7038	0.0011543	4.8004	0.0020494	426.9296455594754	62.872	0.9491	59.838	59.611	60.56	-3.0339					49	18	4	0	0	0	0.72472	1	2340	2340		19.263	0	1	121650	+		63189	19158	52119	52169	69310	69310					0.13642564130077517
VVVAWLLSV	9	Unmodified	_VVVAWLLSV_					0	0	0			REV__nc|ENSG00000211816|A0A0B4J264|TRAV38-1	REV__nc|ENSG00000211816|A0A0B4J264|TRAV38-1	MULTI-MSMS	OvCa9_classI_Rep3	3	493.3045349121094	2	493.307678	984.600803	-0.53214	-0.00026251	-3.952	-0.0019495	-4.4841	-0.0022121	493.3056649294853	115.19	1.6282	114.14	113.7	115.33	-1.055					74	32	4	0	0	0	0.30002	1	8558	8558		62.978	2.6845	1	209660	+		63190	29122	52120	52170	69311	69311					0.10788709350708814
VVVFDISVI	9	Unmodified	_VVVFDISVI_					0	0	0		LRRC2|p.N48Kfs*33|1|0.06|ENSG00000163827|chr3:46545235-46545236|-/C|frameshift_variant;ENST00000469912.1_1_3:46592844-46593081:-|nuORF;ENSG00000163827|ENST00000395905|LRRC2	LRRC2|p.N48Kfs*33|1|0.06|ENSG00000163827|chr3:46545235-46545236|-/C|frameshift_variant	LRRC2|p.N48Kfs*33|1|0.06|ENSG00000163827|chr3:46545235-46545236|-/C|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	495.7533874511719	2	495.797143	989.579734	-0.72226	-0.00035809	-2.4213	-0.0012005	-3.1435	-0.0015585	495.79585984743244	70.701	0.96664	67.22	66.983	67.95	-3.4812					33	19	2	0	0	0	0.027462	1	5423	5423		18.324	0	1	156340			63191	6366	52121	52171	69312	69312					0.0845269925117691
VVVFLLFLV	9	Unmodified	_VVVFLLFLV_					0	0	0		HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|20|1|sense	HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|20|1|sense	HERVS71-int_dup151|chr19:36327347-36330482:-|1.071630613005121|0.3393407502360501|1.66|428.0|20|1|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.8058471679688	2	524.843897	1047.67324	-1.313	-0.0006891	1.763	0.00092528	0.45001	0.00023618	524.8442915691954	93.274	0.29984	90.767	90.513	90.813	-2.5072					6	5	2	0	0	0	0.027462	1	8112	8112		21.702	0	1	14061			63192	14474	52122	52172	69313	69313					0.1513104342425322
VVVGLRALPS	10	Unmodified	_VVVGLRALPS_					0	0	0		ENST00000474116.5_1_13:113863941-113874010:+|nuORF	ENST00000474116.5_1_13:113863941-113874010:+|nuORF	ENST00000474116.5_1_13:113863941-113874010:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	505.82135009765625	2	505.821484	1009.62842	-1.3674	-0.00069167	0.91332	0.00046198	-0.45411	-0.0002297	505.8218949665062	102.55	1.5294	101.86	101.59	103.12	-0.68459					74	30	4	0	0	0	0.6104	1	9457	9457		40.778	5.1599	1	446420			63193	12426	52123	52173	69314	69314					0.1239861261092301
VVVIIFYGTI	10	Unmodified	_VVVIIFYGTI_					0	0	0		ENSG00000188558|ENST00000641804|OR2G6	ENSG00000188558|ENST00000641804|OR2G6	ENSG00000188558|ENST00000641804|OR2G6	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3433837890625	2	562.341718	1122.66888	1.2434	0.00069921	1.8105	0.0010181	3.0539	0.0017173	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.76627	1	14162	14162		23.042	2.0956	1	683710			63194	8477	52124	52174	69315	69315					0.11245534210706865
VVVKIHSANI	10	Unmodified	_VVVKIHSANI_					0	0	0			REV__ENSG00000152104|ENST00000366956|PTPN14	REV__ENSG00000152104|ENST00000366956|PTPN14	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.3325805664062	2	540.332216	1078.64988	0.34656	0.00018726	-4.1131	-0.0022225	-3.7666	-0.0020352	540.3299080097137	139.78	4.9353	138.29	136.52	141.45	-1.4952					262	98	3	0	0	0	0.69073	1	13492	13492		31.53	2.3803	1	342200	+		63195	20270	52125	52175	69316	69316					0.11369997639667417
VVVKVAES	8	Unmodified	_VVVKVAES_					0	0	0			REV__KIF17|p.K764Tfs*27|1|0.06|ENSG00000117245|chr1:20682825-20682826|-/G|frameshift_variant	REV__KIF17|p.K764Tfs*27|1|0.06|ENSG00000117245|chr1:20682825-20682826|-/G|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	415.75384521484375	2	415.752736	829.490919	0.57314	0.00023828	-0.61886	-0.00025729	-0.045719	-1.9008E-05	415.7523867988264	67.006	1.9156	63.516	63.099	65.014	-3.4902					103	38	4	0	0	0	0.62934	1	4955	4955		57.811	0	1	1816100	+		63196	18345	52126	52176	69317	69317					0.06935284011512977
VVVKVPLGATI	11	Unmodified	_VVVKVPLGATI_					0	0	0			REV__ENSG00000062725|ENST00000083182|APPBP2	REV__ENSG00000062725|ENST00000083182|APPBP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.3286743164062	2	548.360442	1094.70633	0.48829	0.00026776	2.2584	0.0012384	2.7467	0.0015062	548.3618479257497	110.68	0.63093	109.08	108.86	109.49	-1.6011					15	11	2	0	0	0	0.025746	1	10212	10212		25.574	5.5773	1	5546.8	+		63197	16754	52127	52177	69318	69318					0.16276625476302797
VVVLTELVV	9	Unmodified	_VVVLTELVV_					0	0	0			REV__ENST00000550482.1_1_12:54676362-54677673:+|nuORF	REV__ENST00000550482.1_1_12:54676362-54677673:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	485.8141174316406	2	485.812793	969.611034	1.4031	0.00068165	0.38188	0.00018552	1.785	0.00086717	485.8128285577155	147.57	4.5874	147.57	147.11	151.7	0					195	92	4	0	0	0	0.25214	1	17379	17379		68.485	0	1	1725900	+		63198	27476	52128	52178	69319	69319					0.12501272285282994
VVVNILVFQA	10	Unmodified	_VVVNILVFQA_					0	0	0			REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I	REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.2674560546875	2	551.336967	1100.65938	8.2337E-05	4.5396E-08	-1.2871	-0.0007096	-1.287	-0.00070955	551.3367275611812	57.388	1.2725	54.043	53.425	54.698	-3.3449					36	24	3	0	0	0	0.026915	1	3683	3683		27.882	22.324	1	37567	+		63199	17404	52129	52179	69320	69320					0.1130776592519851
VVVNILVFQA	10	Unmodified	_VVVNILVFQA_					0	0	0			REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I	REV__nc|ENSG00000100346|Q9P0X4-3|CACNA1I	MULTI-MATCH	OvCa9_classI_Rep2	2		2	551.336967	1100.65938	-0.20556	-0.00011333	-2.6612	-0.0014672	-2.8667	-0.0015805	551.3353685119133	56.583	0.8923	53.779	53.374	54.266	-2.804	-0.13219	-0.00031622	NaN	35.618	27	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26538	+		63200	17404	52129	52179							0.1130776592519851
VVVNVKGKME	10	Oxidation (M)	_VVVNVKGKM(Oxidation (M))E_		VVVNVKGKM(1)E		VVVNVKGKM(42)E	0	0	1			REV__TMEM132D|p.K948Tfs*15|1|0.06|ENSG00000151952|chr12:129074331-129074332|TT/-|frameshift_variant	REV__TMEM132D|p.K948Tfs*15|1|0.06|ENSG00000151952|chr12:129074331-129074332|TT/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	559.8150024414062	2	559.815541	1117.61653	0.75444	0.00042235	-0.39918	-0.00022347	0.35526	0.00019888	559.8149429329505	132.97	1.1835	132.74	132.38	133.56	-0.22696					73	23	4	0	0	0	0.59703	1	13183	13183		42.396	14.514	1	163000	+		63201	20265	52130	52180	69321	69321		475			0.06242627805431766
VVVPGRPM	8	Unmodified	_VVVPGRPM_					0	0	0			REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|13|1|sense	REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|13|1|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	427.7491455078125	2	427.749473	853.484393	-0.15778	-6.7491E-05	-3.4736	-0.0014858	-3.6313	-0.0015533	427.7478116597226	54.028	1.1989	54.028	53.692	54.891	0					72	28	4	0	0	0	0.75724	1	4354	4354		23.037	7.4005	1	5728900	+		63202	28380	52131	52181	69322	69322					0.05179067579160801
VVVPLISVT	9	Unmodified	_VVVPLISVT_					0	0	0			REV__ENST00000550963.1_1_12:72004384-72005014:-|nuORF	REV__ENST00000550963.1_1_12:72004384-72005014:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	463.7978515625	2	463.799686	925.584819	0.21037	9.7568E-05	-3.9036	-0.0018105	-3.6932	-0.0017129	463.7978667804196	70.561	4.2201	67.99	67.714	71.934	-2.5707					173	80	4	0	0	0	0.65476	1	5706	5706		25.45	0	1	2590100	+		63203	27482	52132	52182	69323	69323					0.11905003113804469
VVVPVPAGE	9	Unmodified	_VVVPVPAGE_					0	0	0		ENSG00000006047|ENST00000007699|YBX2	ENSG00000006047|ENST00000007699|YBX2	ENSG00000006047|ENST00000007699|YBX2	MULTI-MSMS	OvCa99_classI_Rep5	1	433.7528991699219	2	433.752736	865.490919	0.5643	0.00024477	-0.57356	-0.00024878	-0.0092565	-4.015E-06	433.7523781215916	31.287	0.53286	31.287	31.076	31.608	0					18	10	3	0	0	0	0.46377	1	1279	1279		45.952	13.997	1	195400			63204	869	52133	52183	69324	69324					0.05279284011521668
VVVQGLYKS	9	Unmodified	_VVVQGLYKS_					0	0	0		ENSG00000170852|ENST00000304056|KBTBD2	ENSG00000170852|ENST00000304056|KBTBD2	ENSG00000170852|ENST00000304056|KBTBD2	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.2716979980469	2	496.792392	991.570232	-0.55151	-0.00027399	-3.2042	-0.0015918	-3.7557	-0.0018658	496.79074463692604	36.007	0.32019	36.007	35.799	36.119	0					8	6	2	0	0	0	0.027441	1	1840	1840		49.442	26.399	1	39356			63205	7144	52134	52184	69325	69325					0.0741093096565919
VVVQHETL	8	Unmodified	_VVVQHETL_					0	0	0			REV__DHX34|p.K176T|1|0.13|ENSG00000134815|chr19:47353557-47353557|A/C|missense_variant	REV__DHX34|p.K176T|1|0.13|ENSG00000134815|chr19:47353557-47353557|A/C|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	462.7989807128906	2	462.761092	923.507631	2.678	0.0012393	0.52289	0.00024198	3.2009	0.0014812	462.76109115001634	94.157	0.33926	94.157	94.051	94.39	0					12	7	2	0	0	0	0.028476	1	10259	10259		29.15	0	1	220920	+		63206	16297	52135	52185	69326	69326					0.04281784897466423
VVVQSVAKLVG	11	Unmodified	_VVVQSVAKLVG_					0	0	0		nc|ENSG00000166589|O75309-3|CDH16;CDH16|p.S747Rfs*15|1|0.06|ENSG00000166589|chr16:66910020-66910021|-/GTAAT|frameshift_variant;nc|ENSG00000166589|O75309-4|CDH16;nc|ENSG00000166589|O75309-2|CDH16;ENSG00000166589|ENST00000299752|CDH16	nc|ENSG00000166589|O75309-3|CDH16	nc|ENSG00000166589|O75309-3|CDH16	MULTI-MSMS	OvCa99_classI_Rep5	1	549.846435546875	2	549.847699	1097.68084	-0.59285	-0.00032598	-2.4467	-0.0013453	-3.0396	-0.0016713	549.8462750376704	29.426	0.79742	29.426	29.087	29.885	0					17	15	2	0	0	0	0.65063	1	1048	1048		40.058	0.80534	1	232550			63207	211	52136	52186	69327	69327					0.1359115095388006
VVVRLRTF	8	Unmodified	_VVVRLRTF_					0	0	0			REV__tr|A0A7D6VSN6|A0A7D6VSN6_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_23470PE=4SV=1	REV__tr|A0A7D6VSN6|A0A7D6VSN6_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_23470PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.2579040527344	2	495.316369	988.618185	-0.53893	-0.00026694	0.52342	0.00025926	-0.015508	-7.6813E-06	495.31650382083194	48.467	0.46325	45.36	45.141	45.604	-3.1077					12	8	2	0	0	0	0.028476	1	2698	2698		8.2313	0	1	13103	+		63208	31523	52137	52187	69328	69328					0.12342049676374245
VVVRQKRAP	9	Unmodified	_VVVRQKRAP_					0	0	0		ENSG00000260734|ENST00000561754|TLE7	ENSG00000260734|ENST00000561754|TLE7	ENSG00000260734|ENST00000561754|TLE7	MULTI-SECPEP	OvCa9_classI_Rep2	2	526.314453125	2	526.838	1051.66145	-0.11457	-6.0361E-05	2.7395	0.0014433	2.6249	0.0013829	526.839370688809	123.36	0.93607	123.14	122.85	123.79	-0.22192					25	18	2	0	0	0	0.027462	1	12024	12024		30.504	0.18592	1	18992			63209	9495	52138	52188	69329	69329					0.13768239453634123
VVVSVPQRI	9	Unmodified	_VVVSVPQRI_					0	0	0		ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	ENSG00000132182|ENST00000254508|NUP210	MULTI-MSMS	OvCa99_classI_Rep5	1	498.8153381347656	2	498.813659	995.612765	1.9359	0.00096565	1.2515	0.00062424	3.1873	0.0015899	498.8140157753971	85.563	0.82211	85.563	85.211	86.033	0					41	19	3	0	0	0	0.56889	1	8988	8988		35.618	2.8059	1	2618000			63210	4115	52139	52189	69330	69330					0.114783260938907
VVVTKGEV	8	Unmodified	_VVVTKGEV_					0	0	0			REV__tr|A0A7D6VSI4|A0A7D6VSI4_9CLOTShikimatedehydrogenase(NADP(+))OS=ClostridiumintestinaleOX=36845GN=aroEPE=3SV=1	REV__tr|A0A7D6VSI4|A0A7D6VSI4_9CLOTShikimatedehydrogenase(NADP(+))OS=ClostridiumintestinaleOX=36845GN=aroEPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	415.7522888183594	2	415.752736	829.490919	1.1745	0.0004883	-1.0985	-0.0004567	0.075999	3.1597E-05	415.75224317514534	66.337	1.8353	63.641	63.121	64.956	-2.6958					65	36	2	0	0	0	0.39692	1	5141	5141		88.643	3.2834	1	443710	+		63211	31505	52140	52190	69331	69331					0.06935284011524345
VVVTLQLGG	9	Unmodified	_VVVTLQLGG_					0	0	0		nc|ENSG00000289720|Q96J02-3|ITCH;ENSG00000078747|ENST00000374864|ITCH;nc|ENSG00000289720|Q96J02|ITCH	nc|ENSG00000289720|Q96J02-3|ITCH	nc|ENSG00000289720|Q96J02-3|ITCH	MULTI-MSMS	OvCa9_classI_Rep4_	4	443.2735900878906	2	443.273835	884.533118	1.1525	0.00051086	-4.3689	-0.0019366	-3.2165	-0.0014258	443.27180064343105	139.52	2.0991	138.02	137.22	139.32	-1.4952					91	40	3	0	0	0	0.62352	1	13714	13714		29.15	4.9468	1	858700			63212	1600	52141	52191	69332	69332					0.08623259419914575
VVVVKAGLYA	10	Unmodified	_VVVVKAGLYA_					0	0	0			REV__nc|ENSG00000133816|O94851-5|MICAL2	REV__nc|ENSG00000133816|O94851-5|MICAL2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.75775146484375	2	509.81841	1017.62227	0.90083	0.00045926	-0.98183	-0.00050055	-0.080996	-4.1293E-05	509.81768324561455	140.01	0.55568	138.52	138.2	138.76	-1.4952					17	10	2	0	0	0	0.027021	1	13677	13677		29.15	1.2673	1	9344.5	+		63213	19159	52142	52192	69333	69333					0.11416094379399055
VVVVTDKL	8	Unmodified	_VVVVTDKL_					0	0	0			REV__tr|A0A553SIU0|A0A553SIU0_NIACIYigZfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15525PE=3SV=1	REV__tr|A0A553SIU0|A0A553SIU0_NIACIYigZfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15525PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	436.7747802734375	2	436.776211	871.537869	-1.3218	-0.00057733	-1.7819	-0.0007783	-3.1037	-0.0013556	436.77534043072393	144.04	2.131	143.81	143.2	145.33	-0.22697					119	42	4	0	0	0	0.75241	1	14516	14516		25.45	0	1	537180	+		63214	29927	52143	52193	69334	69334					0.0969614356264401
VVVVTDKL	8	Unmodified	_VVVVTDKL_					0	0	0			REV__tr|A0A553SIU0|A0A553SIU0_NIACIYigZfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15525PE=3SV=1	REV__tr|A0A553SIU0|A0A553SIU0_NIACIYigZfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_15525PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.7746276855469	2	436.776211	871.537869	-0.44072	-0.00019249	-2.8293	-0.0012358	-3.27	-0.0014283	436.7748691455194	144.87	2.2884	143.44	143.04	145.33	-1.4357					111	43	5	0	0	0	0.74971	1	14198	14198		26.796	0	1	1417100	+		63215	29927	52143	52193	69335	69335					0.0969614356264401
VVVYTLSA	8	Unmodified	_VVVYTLSA_					0	0	0			REV__tr|A0A553SR41|A0A553SR41_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00305PE=4SV=1	REV__tr|A0A553SR41|A0A553SR41_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_00305PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	426.2458190917969	2	426.247286	850.48002	-0.93249	-0.00039747	-2.0488	-0.0008733	-2.9813	-0.0012708	426.2463036759244	138.33	1.7168	138.1	137.59	139.3	-0.22696					83	34	3	0	0	0	0.72922	1	13840	13840		37.028	0	1	161940	+		63216	30690	52144	52194	69336	69336					0.04879881637248218
VVWLFDDRF	9	Unmodified	_VVWLFDDRF_					0	0	0			REV__LCT|p.G910V|1|0.22|ENSG00000115850|chr2:135809618-135809618|C/A|missense_variant	REV__LCT|p.G910V|1|0.22|ENSG00000115850|chr2:135809618-135809618|C/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	598.8096313476562	2	598.808574	1195.60259	-0.27081	-0.00016216	0.46963	0.00028122	0.19882	0.00011906	598.8089070417255	110.82	1.5782	110.68	110.34	111.91	-0.13961					110	31	5	0	0	0	0.40667	1	10443	10443		51.335	1.7994	1	950560	+		63217	28616	52145	52195	69337	69337					0.012617183686415956
VVWLFDDRF	9	Unmodified	_VVWLFDDRF_					0	0	0			REV__LCT|p.G910V|1|0.22|ENSG00000115850|chr2:135809618-135809618|C/A|missense_variant	REV__LCT|p.G910V|1|0.22|ENSG00000115850|chr2:135809618-135809618|C/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	598.807861328125	2	598.808574	1195.60259	3.1513	0.001887	-2.6963	-0.0016146	0.45499	0.00027245	598.8073615391039	111.73	2.1287	110.63	110.35	112.48	-1.1038					128	42	5	0	0	0	0.53957	1	8159	8159		38.806	0	1	1163200	+		63218	28616	52145	52195	69338	69338					0.012617183686415956
VVWLFDDRF	9	Unmodified	_VVWLFDDRF_					0	0	0			REV__LCT|p.G910V|1|0.22|ENSG00000115850|chr2:135809618-135809618|C/A|missense_variant	REV__LCT|p.G910V|1|0.22|ENSG00000115850|chr2:135809618-135809618|C/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	598.8086547851562	2	598.808574	1195.60259	0.75656	0.00045303	-0.75088	-0.00044963	0.0056794	3.4009E-06	598.808152304731	112.14	1.5716	110.62	110.32	111.89	-1.5111					112	30	5	0	0	0	0.46356	1	10371	10371		45.972	1.5951	1	1223900	+		63219	28616	52145	52195	69339	69339					0.012617183686415956
VVWLWLGL	8	Unmodified	_VVWLWLGL_					0	0	0		chr9:34637420-34637607|143|13.34|0.24|5.81|-|2|SIGMAR1,SIGMAR1|1;nc|ENSG00000147955|Q99720-2|SIGMAR1	chr9:34637420-34637607|143|13.34|0.24|5.81|-|2|SIGMAR1,SIGMAR1|1	chr9:34637420-34637607|143|13.34|0.24|5.81|-|2|SIGMAR1,SIGMAR1|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.8319091796875	2	493.297114	984.579674	2.4141	0.0011909	-1.459	-0.00071972	0.95508	0.00047114	493.29585599289703	75.641	0.43131	75.641	75.482	75.913	0					21	10	3	0	0	0	0.028476	1	7531	7531		24.504	0	1	233870			63220	555	52146	52196	69340	69340					0.08676744041838447
VVWRKPQS	8	Unmodified	_VVWRKPQS_					0	0	0		ENST00000514705.5_1_5:176081385-176084696:+|nuORF	ENST00000514705.5_1_5:176081385-176084696:+|nuORF	ENST00000514705.5_1_5:176081385-176084696:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.812255859375	2	500.290351	998.566149	-0.11374	-5.6903E-05	0.5425	0.00027141	0.42876	0.0002145	500.79216966650785	68.77	0.16655	68.77	68.692	68.858	0					5	3	2	0	0	0	0.028476	1	6502	6502		8.2313	0	1	92154			63221	13033	52147	52197	69341	69341					0.06680886262608965
VVWSVIINN	9	Unmodified	_VVWSVIINN_					0	0	0		ENST00000371432.7_1_6:45515222-45515519:+|nuORF	ENST00000371432.7_1_6:45515222-45515519:+|nuORF	ENST00000371432.7_1_6:45515222-45515519:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.325927734375	2	522.297842	1042.58113	1.2691	0.00066285	2.5419	0.0013276	3.811	0.0019905	522.2992090224049	78.85	0.94632	78.85	78.294	79.24	0					43	22	3	0	0	0	0.027462	1	8002	8002		37.159	0	1	1351900			63222	10954	52148	52198	69342	69342					0.06154333339964069
VVWTFQGYIT	10	Unmodified	_VVWTFQGYIT_					0	0	0			REV__tr|A0A553SGM0|A0A553SGM0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_11085PE=4SV=1	REV__tr|A0A553SGM0|A0A553SGM0_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_11085PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	607.3153076171875	2	607.316232	1212.61791	-1.2203	-0.00074109	-2.3325	-0.0014166	-3.5527	-0.0021576	607.314776519483	107.39	1.3422	105.51	105.17	106.51	-1.8785					88	26	5	0	0	0	0.58667	1	9850	9850		31.53	0	1	1457500	+		63223	29718	52149	52199	69343	69343					0.020105851658399843
VVYEPLVLD	9	Unmodified	_VVYEPLVLD_					0	0	0			REV__ENSG00000131951|ENST00000570145|LRRC9	REV__ENSG00000131951|ENST00000570145|LRRC9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.7948608398438	2	523.792058	1045.56956	-3.0052	-0.0015741	-0.86575	-0.00045347	-3.871	-0.0020276	523.7915744502105	88.201	1.0089	85.598	85.327	86.336	-2.6027					58	19	4	0	0	0	0.027462	1	7528	7528		29.15	7.1897	1	200180	+		63224	19044	52150	52200	69344	69344					0.04860091525938515
VVYEPLVLD	9	Unmodified	_VVYEPLVLD_					0	0	0			REV__ENSG00000131951|ENST00000570145|LRRC9	REV__ENSG00000131951|ENST00000570145|LRRC9	MULTI-MATCH	OvCa9_classI_Rep2	2		2	523.792058	1045.56956	1.033	0.00054106	-5.2681	-0.0027594	-4.2351	-0.0022183	523.7891698865309	87.092	1.3423	85.661	85.334	86.676	-1.4311	0.040677	-0.0024188	NaN	29.15	67	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	130030	+		63225	19044	52150	52200							0.04860091525938515
VVYEPLVLD	9	Unmodified	_VVYEPLVLD_					0	0	0			REV__ENSG00000131951|ENST00000570145|LRRC9	REV__ENSG00000131951|ENST00000570145|LRRC9	MULTI-MATCH	OvCa9_classI_Rep3	3		2	523.792058	1045.56956	-0.95467	-0.00050005	-2.4417	-0.001279	-3.3964	-0.001779	523.7906838853373	87.769	1.0766	85.592	85.241	86.318	-2.1768	-0.02776	0.00054204	NaN	29.15	56	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	243040	+		63226	19044	52150	52200							0.04860091525938515
VVYERREKN	9	Unmodified	_VVYERREKN_					0	0	0		tr|A0A553SPI1|A0A553SPI1_NIACIDUF2087domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26420PE=4SV=1	tr|A0A553SPI1|A0A553SPI1_NIACIDUF2087domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26420PE=4SV=1	tr|A0A553SPI1|A0A553SPI1_NIACIDUF2087domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26420PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	597.3052368164062	2	596.825286	1191.63602	1.3615	0.00081258	-0.066643	-3.9774E-05	1.2949	0.00077281	597.3266421610243	145.92	0.3	145.92	145.83	146.13	0					6	5	2	0	0	0	0.027462	1	17083	17083		30.318	7.2752	1	15074			63227	34048	52151	52201	69345	69345					0.047867201405551896
VVYKNLTETE	10	Unmodified	_VVYKNLTETE_					0	0	0			REV__ENSG00000163464|ENST00000295683|CXCR1	REV__ENSG00000163464|ENST00000295683|CXCR1	MULTI-MSMS	OvCa9_classI_Rep3	3	598.3153686523438	2	598.313886	1194.61322	1.4194	0.00084925	1.8423	0.0011022	3.2617	0.0019515	598.315419282376	108.54	8.5813	107.34	106.85	115.43	-1.1978					384	169	6	0	0	0	0.39172	1	7859	7859		69.628	11.398	1	23942000	+		63228	20838	52152	52202	69346	69346					0.02369656232417583
VVYLRIYVYVK	11	Unmodified	_VVYLRIYVYVK_					0	0	0		ENSG00000171517|ENST00000370611|LPAR3	ENSG00000171517|ENST00000370611|LPAR3	ENSG00000171517|ENST00000370611|LPAR3	MULTI-MSMS	OvCa9_classI_Rep3	3	472.28326416015625	3	472.286746	1413.83841	-6.0447	-0.0028549	-0.27842	-0.00013149	-6.3232	-0.0029863	472.28675973301637	159.08	3.3809	157.81	156.71	160.09	-1.267					177	72	4	0	0	0	0.72472	1	13747	13747		19.263	5.1767	1	110830			63229	7210	52153	52203	69347	69347					0.14804230493245996
VVYLVTEVDY	10	Unmodified	_VVYLVTEVDY_					0	0	0		ENST00000457388.1_1_10:37626656-37627235:+|nuORF	ENST00000457388.1_1_10:37626656-37627235:+|nuORF	ENST00000457388.1_1_10:37626656-37627235:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	600.3128051757812	2	600.313354	1198.61216	-1.4044	-0.00084307	1.4786	0.00088764	0.074242	4.4568E-05	600.3143237645828	100.13	3.6625	99.3	98.816	102.48	-0.83051					193	73	6	0	0	0	0.56767	1	9145	9145		45.952	9.5052	1	397560			63230	12125	52154	52204	69348	69348					0.020794418635205147
VVYLVTEVDY	10	Unmodified	_VVYLVTEVDY_					0	0	0		ENST00000457388.1_1_10:37626656-37627235:+|nuORF	ENST00000457388.1_1_10:37626656-37627235:+|nuORF	ENST00000457388.1_1_10:37626656-37627235:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	600.315185546875	2	600.313354	1198.61216	0.10657	6.3974E-05	-0.17492	-0.00010501	-0.06835	-4.1031E-05	600.3133222024811	101.55	3.5557	99.284	98.883	102.44	-2.2665					163	68	6	0	0	0	0.58282	1	9108	9108		44.117	9.9443	1	611890			63231	12125	52154	52204	69349	69349					0.020794418635205147
VVYPMTATIW	10	Oxidation (M)	_VVYPM(Oxidation (M))TATIW_		VVYPM(1)TATIW		VVYPM(56)TATIW	0	0	1			REV__ENSG00000142319|ENST00000270349|SLC6A3	REV__ENSG00000142319|ENST00000270349|SLC6A3	MULTI-MSMS	OvCa9_classI_Rep3	3	598.8082885742188	2	598.804642	1195.59473	3.1513	0.001887	3.8689	0.0023167	7.0202	0.0042037	598.8073615391039	111.73	2.1287	110.63	110.35	112.48	-1.1038					128	42	5	0	0	0	0.49049	2	8118	8118;8134		55.504	11.387	1	1163200	+		63232	19781	52155	52205	69350;69351	69350		449			0.00475823056876834
VVYPWTQRF	9	Unmodified	_VVYPWTQRF_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__P02070;ENSG00000223609|ENST00000650601|HBD;CON__Q3SX09;ENSG00000213934|ENST00000330597|HBG1;ENSG00000213931|ENST00000396895|HBE1;ENSG00000196565|ENST00000336906|HBG2	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	OvCa99_classI_Rep5	1	598.3176879882812	2	598.316566	1194.61858	2.8146	0.001684	-2.2493	-0.0013458	0.56528	0.00033822	598.3157812049378	107.7	3.2476	107.7	106.97	110.22	0					238	74	4	0	0	0	0.029147	11	12184	12127;12154;12184;12214;12244;12268;12293;12359;12382;12433;12457		136.27	51.201	1	352030000		+	63233	9402	52156	52206	69352;69353;69354;69355;69356;69357;69358;69359;69360;69361;69362	69354					0.029054246055238764
VVYPWTQRF	9	Unmodified	_VVYPWTQRF_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__P02070;ENSG00000223609|ENST00000650601|HBD;CON__Q3SX09;ENSG00000213934|ENST00000330597|HBG1;ENSG00000213931|ENST00000396895|HBE1;ENSG00000196565|ENST00000336906|HBG2	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	OvCa99_classI_Rep5	1	598.3231201171875	2	598.316566	1194.61858	2.0964	0.0012543	0.44496	0.00026623	2.5413	0.0015205	598.3169192735461	110.35	1.5661	110.35	110.27	111.83	0					65	34	3	0	0	0	0.5811	1	12715	12715		34.173	1.3601	1	1344000		+	63234	9402	52156	52206	69363	69363					0.029054246055238764
VVYPWTQRF	9	Unmodified	_VVYPWTQRF_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__P02070;ENSG00000223609|ENST00000650601|HBD;CON__Q3SX09;ENSG00000213934|ENST00000330597|HBG1;ENSG00000213931|ENST00000396895|HBE1;ENSG00000196565|ENST00000336906|HBG2	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	OvCa99_classI_Rep5	1	598.3179321289062	2	598.316566	1194.61858	2.3059	0.0013796	0.38201	0.00022856	2.6879	0.0016082	598.3163016858603	120.25	2.4324	120.25	119.74	122.17	0					123	55	3	0	0	0	0.1944	4	13881	13829;13857;13881;13906		77.318	33.201	1	2403400		+	63235	9402	52156	52206	69364;69365;69366;69367	69366					0.029054246055238764
VVYPWTQRF	9	Unmodified	_VVYPWTQRF_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__P02070;ENSG00000223609|ENST00000650601|HBD;CON__Q3SX09;ENSG00000213934|ENST00000330597|HBG1;ENSG00000213931|ENST00000396895|HBE1;ENSG00000196565|ENST00000336906|HBG2	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	OvCa9_classI_Rep2	2	598.3155517578125	2	598.316566	1194.61858	-0.34945	-0.00020908	-1.1281	-0.00067495	-1.4775	-0.00088403	598.3162323551261	107.59	8.1344	107.28	106.62	114.76	-0.30836					394	164	6	0	0	0	0.012051	34	10035	10025;10029;10035;10041;10047;10053;10059;10065;10071;10077;10083;10089;10095;10101;10107;10113;10119;10125;10131;10137;10143;10150;10156;10162;10168;10174;10181;10193;10200;10237;10288;10311;10317;10324		162.25	69.109	1	20062000		+	63236	9402	52156	52206	69368;69369;69370;69371;69372;69373;69374;69375;69376;69377;69378;69379;69380;69381;69382;69383;69384;69385;69386;69387;69388;69389;69390;69391;69392;69393;69394;69395;69396;69397;69398;69399;69400;69401	69370					0.029054246055238764
VVYPWTQRF	9	Unmodified	_VVYPWTQRF_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__P02070;ENSG00000223609|ENST00000650601|HBD;CON__Q3SX09;ENSG00000213934|ENST00000330597|HBG1;ENSG00000213931|ENST00000396895|HBE1;ENSG00000196565|ENST00000336906|HBG2	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	OvCa9_classI_Rep3	3	598.315673828125	2	598.316566	1194.61858	1.4194	0.00084925	-2.6371	-0.0015778	-1.2177	-0.00072858	598.315419282376	108.54	8.5813	107.34	106.85	115.43	-1.1978					384	169	6	0	0	0	0.0086488	29	7786	7727;7732;7738;7744;7750;7756;7762;7768;7774;7780;7786;7792;7798;7804;7810;7816;7822;7828;7834;7840;7846;7853;7865;7877;7964;7979;7992;7999;8005		176.09	60.593	1	23942000		+	63237	9402	52156	52206	69402;69403;69404;69405;69406;69407;69408;69409;69410;69411;69412;69413;69414;69415;69416;69417;69418;69419;69420;69421;69422;69423;69424;69425;69426;69427;69428;69429;69430	69412					0.029054246055238764
VVYPWTQRF	9	Unmodified	_VVYPWTQRF_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__P02070;ENSG00000223609|ENST00000650601|HBD;CON__Q3SX09;ENSG00000213934|ENST00000330597|HBG1;ENSG00000213931|ENST00000396895|HBE1;ENSG00000196565|ENST00000336906|HBG2	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	OvCa9_classI_Rep4_	4	598.3180541992188	2	598.316566	1194.61858	-0.10474	-6.2667E-05	-1.0256	-0.00061363	-1.1303	-0.00067629	598.316223305457	109.07	8.6473	107.34	106.82	115.46	-1.7256					380	168	6	0	0	0	0.0073055	20	10028	9972;9980;9992;10004;10016;10028;10040;10052;10064;10076;10088;10100;10112;10125;10137;10163;10181;10203;10240;10253		190.52	69.649	1	25436000		+	63238	9402	52156	52206	69431;69432;69433;69434;69435;69436;69437;69438;69439;69440;69441;69442;69443;69444;69445;69446;69447;69448;69449;69450	69436					0.029054246055238764
VVYSSGRVFW	10	Unmodified	_VVYSSGRVFW_					0	0	0		ENSG00000184574|ENST00000329858|LPAR5	ENSG00000184574|ENST00000329858|LPAR5	ENSG00000184574|ENST00000329858|LPAR5	MULTI-MSMS	OvCa9_classI_Rep2	2	600.3123779296875	2	600.314023	1198.61349	-1.4044	-0.00084307	0.3647	0.00021894	-1.0397	-0.00062413	600.3143237645828	100.13	3.6625	99.3	98.816	102.48	-0.83051					193	73	6	0	0	0	0.62299	1	9156	9156		39.253	2.8061	1	397560			63239	8172	52157	52207	69451	69451					0.022131207429538335
VWAKAQPMIE	10	Unmodified	_VWAKAQPMIE_					0	0	0			REV__ENST00000261439.8_1_4:38139186-38139444:+|nuORF	REV__ENST00000261439.8_1_4:38139186-38139444:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	586.8126220703125	2	586.810259	1171.60597	-1.1469	-0.00067299	4.4217	0.0025947	3.2749	0.0019217	586.8123641279401	70.202	0.96907	70.202	69.712	70.681	0					52	23	3	0	0	0	0.42962	1	6713	6713		64.207	2.0999	1	2861300	+		63240	23949	52158	52208	69452	69452					0.02702645151020988
VWEKIKIL	8	Unmodified	_VWEKIKIL_					0	0	0			REV__ENSG00000138430|ENST00000284719|OLA1	REV__ENSG00000138430|ENST00000284719|OLA1	MULTI-MSMS	OvCa99_classI_Rep5	1	514.82958984375	2	514.828778	1027.643	0.87834	0.0004522	0.8485	0.00043683	1.7268	0.00088903	514.8290794141726	131.53	0.5143	131.53	131.29	131.81	0					22	10	3	0	0	0	0.65062	1	15281	15281		53.351	7.3995	1	108150	+		63241	19539	52159	52209	69453	69453					0.13028684759092357
VWELSWSVNLG	11	Unmodified	_VWELSWSVNLG_					0	0	0			REV__ENST00000454079.5_1_3:50099151-50099352:+|nuORF	REV__ENST00000454079.5_1_3:50099151-50099352:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	645.3248901367188	2	645.32987	1288.64519	-1.4341	-0.00092546	-4.1165	-0.0026565	-5.5506	-0.003582	645.327117611008	98.778	3.0684	97.885	96.974	100.04	-0.89305					168	61	4	0	0	0	0.69081	1	8976	8976		32.812	2.4947	1	979390	+		63242	25997	52160	52210	69454	69454					0.012410687062356374
VWEPLQHVFG	10	Unmodified	_VWEPLQHVFG_					0	0	0		nc|ENSG00000084693|Q8NDL9-3|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	MULTI-MSMS	OvCa99_classI_Rep5	1	606.3142700195312	2	606.314023	1210.61349	1.4497	0.000879	1.0141	0.00061488	2.4639	0.0014939	606.3143967908018	83.242	1.1407	83.242	82.781	83.921	0					64	26	3	0	0	0	0.6349	1	8654	8654		37.812	2.6595	1	1003900			63243	14906	52161	52211	69455	69455					0.016611207429377828
VWEPLQHVFG	10	Unmodified	_VWEPLQHVFG_					0	0	0		nc|ENSG00000084693|Q8NDL9-3|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	606.314023	1210.61349	-1.5066	-0.00091349	1.6075	0.00097466	0.10089	6.1171E-05	606.3148857894776	84.392	1.8203	82.846	82.122	83.943	-1.5462	-0.13398	0.0016525	NaN	37.812	81	35	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	85687			63244	14906	52161	52211							0.016611207429377828
VWEPLQHVFG	10	Unmodified	_VWEPLQHVFG_					0	0	0		nc|ENSG00000084693|Q8NDL9-3|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	606.314023	1210.61349	0.6449	0.00039101	-1.1584	-0.00070237	-0.51353	-0.00031136	606.3133563371497	85.103	1.7776	82.883	82.108	83.885	-2.2204	-0.096772	-0.0017016	NaN	37.812	83	35	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	166030			63245	14906	52161	52211							0.016611207429377828
VWEPLQHVFG	10	Unmodified	_VWEPLQHVFG_					0	0	0		nc|ENSG00000084693|Q8NDL9-3|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	nc|ENSG00000084693|Q8NDL9-3|AGBL5	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	606.314023	1210.61349	1.9103	0.0011583	-1.4077	-0.00085352	0.50261	0.00030474	606.3133001892185	85.594	2.3149	82.948	82.215	84.53	-2.6463	-0.03148	-0.0020039	NaN	37.812	68	46	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97032			63246	14906	52161	52211							0.016611207429377828
VWFRIPNQF	9	Unmodified	_VWFRIPNQF_					0	0	0		HEBP1|p.R152Lfs*24|1|0.04|ENSG00000013583|chr12:12975423-12975423|C/-|frameshift_variant;ENSG00000013583|ENST00000014930|HEBP1	HEBP1|p.R152Lfs*24|1|0.04|ENSG00000013583|chr12:12975423-12975423|C/-|frameshift_variant	HEBP1|p.R152Lfs*24|1|0.04|ENSG00000013583|chr12:12975423-12975423|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	603.82568359375	2	603.824558	1205.63456	1.9349	0.0011683	-0.20271	-0.0001224	1.7322	0.0010459	603.8242907528492	127.84	0.92911	127.84	127.54	128.47	0					58	19	5	0	0	0	0.062324	2	14794	14794;14819		111.65	51.53	1	1144000			63247	991	52162	52212	69456;69457	69456					0.039971308424583185
VWFVASIGVI	10	Unmodified	_VWFVASIGVI_					0	0	0			REV__ENST00000521195.1_1_8:104320096-104343734:+|nuORF	REV__ENST00000521195.1_1_8:104320096-104343734:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	545.8161010742188	2	545.81841	1089.62227	-1.197	-0.00065337	-2.7873	-0.0015214	-3.9843	-0.0021747	545.8167800423154	120.61	1.2338	120.42	120.06	121.3	-0.19718					56	24	3	0	0	0	0.62668	1	11639	11639		38.806	0	1	190390	+		63248	21038	52163	52213	69458	69458					0.08104094379427806
VWGRKPTMV	9	Unmodified	_VWGRKPTMV_					0	0	0		tr|A0A553SUI3|A0A553SUI3_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00170PE=3SV=1	tr|A0A553SUI3|A0A553SUI3_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00170PE=3SV=1	tr|A0A553SUI3|A0A553SUI3_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00170PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	536.34033203125	2	537.299862	1072.58517	-1.6582	-0.00089095	3.6928	0.0019841	2.0346	0.0010932	537.3017755669003	49.011	0.64329	46.251	45.929	46.572	-2.7603					17	12	2	0	0	0	0.027462	1	3083	3083		17.365	0.89182	1	15339			63249	34613	52164	52214	69459	69459					0.05178099561999261
VWGRKPTMV	9	Unmodified	_VWGRKPTMV_					0	0	0		tr|A0A553SUI3|A0A553SUI3_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00170PE=3SV=1	tr|A0A553SUI3|A0A553SUI3_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00170PE=3SV=1	tr|A0A553SUI3|A0A553SUI3_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_00170PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	537.299862	1072.58517	-2.8347	-0.0015231	4.5335	0.0024358	1.6987	0.00091274	537.3022075300069	49.25	1.1948	46.108	45.728	46.922	-3.1416	-0.026915	0.0030075	NaN	17.365	32	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54929			63250	34613	52164	52214							0.05178099561999261
VWGVFYSIIL	10	Unmodified	_VWGVFYSIIL_					0	0	0			REV__ENSG00000109991|ENST00000263314|P2RX3	REV__ENSG00000109991|ENST00000263314|P2RX3	MULTI-MSMS	OvCa9_classI_Rep4_	4	598.836181640625	2	598.839342	1195.66413	-0.044318	-2.654E-05	-1.807	-0.0010821	-1.8513	-0.0011087	598.8380395804049	82.48	0.8293	79.797	79.441	80.27	-2.683					45	16	3	0	0	0	0.71192	1	6848	6848		29.15	1.2673	1	765930	+		63251	17962	52165	52215	69460	69460					0.07412650067931281
VWHIEKKID	9	Unmodified	_VWHIEKKID_					0	0	0		chr2:170993945-170996653|228|12.74|0.61|4.38|-|2|None,TLK1|2	chr2:170993945-170996653|228|12.74|0.61|4.38|-|2|None,TLK1|2	chr2:170993945-170996653|228|12.74|0.61|4.38|-|2|None,TLK1|2	MSMS	OvCa99_classI_Rep5	1	584.3291015625	2	584.329673	1166.64479	NaN	NaN	NaN	NaN	NaN	NaN	NaN	167.93	1	167.93	167.43	168.43	0								0	0	0	0.28349	1	19331	19331		1.3276	0	1				63252	433	52166	52216	69461	69461					0.06813693777030494
VWILRKPTN	9	Unmodified	_VWILRKPTN_					0	0	0		ENST00000520448.5_1_8:24199244-24211914:+|nuORF	ENST00000520448.5_1_8:24199244-24211914:+|nuORF	ENST00000520448.5_1_8:24199244-24211914:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	563.8399047851562	2	563.840208	1125.66586	-0.19529	-0.00011011	-3.8184	-0.002153	-4.0137	-0.0022631	563.8379584814613	52.105	0.78051	52.105	51.829	52.61	0					40	17	3	0	0	0	0.46377	1	4079	4079		45.952	3.5558	1	3543600			63253	13105	52167	52217	69462	69462					0.10805703876576445
VWISAAALSI	10	Unmodified	_VWISAAALSI_					0	0	0		ENSG00000214943|ENST00000399285|GPR33	ENSG00000214943|ENST00000399285|GPR33	ENSG00000214943|ENST00000399285|GPR33	MSMS	OvCa9_classI_Rep4_	4	515.7947387695312	2	515.800217	1029.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	63.546	1	60.071	59.571	60.571	-3.475								0	0	0	0.1384	1	4474	4474		31.53	1.0262	1				63254	9190	52168	52218	69463	69463					0.07227217482704873
VWLALLQPP	9	Unmodified	_VWLALLQPP_					0	0	0			REV__ENST00000307630.4_1_7:75959536-75988336:-|nuORF	REV__ENST00000307630.4_1_7:75959536-75988336:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.7962036132812	2	518.813128	1035.6117	0.53186	0.00027593	-1.4139	-0.00073353	-0.88201	-0.0004576	518.810239013604	79.476	0.61859	77.736	77.46	78.079	-1.7398					30	11	4	0	0	0	0.027462	1	6708	6708		38.806	4.6336	1	32021	+		63255	24310	52169	52219	69464	69464					0.09532111724979586
VWLLQQFQHLR	11	Unmodified	_VWLLQQFQHLR_					0	0	0			REV__nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1	REV__nc|ENSG00000088827|Q9BZZ2-3|SIGLEC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.94720458984375	3	489.945494	1466.81465	1.1638	0.00057021	3.2871	0.0016105	4.4509	0.0021807	489.9470372776395	37.004	1.6445	34.111	33.496	35.14	-2.8925					108	32	4	0	0	0	0.71048	1	1317	1317		26.063	6.0329	1	179890	+		63256	17182	52170	52220	69465	69465					0.09991809779467076
VWLMILLVG	9	Unmodified	_VWLMILLVG_					0	0	0		KDM3B|p.S522Pfs*43|1|0.54|ENSG00000120733|chr5:138391195-138391195|C/-|frameshift_variant	KDM3B|p.S522Pfs*43|1|0.54|ENSG00000120733|chr5:138391195-138391195|C/-|frameshift_variant	KDM3B|p.S522Pfs*43|1|0.54|ENSG00000120733|chr5:138391195-138391195|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.3160400390625	2	522.319731	1042.62491	-6.4383	-0.0033629	-0.88276	-0.00046108	-7.3211	-0.003824	522.3190787634154	159.18	0.69006	157.6	157.38	158.07	-1.5858					28	16	2	0	0	0	0.61768	1	15712	15712		29.842	0.67148	1	32086			63257	14519	52171	52221	69466	69466					0.10530226512742047
VWLSKEAVSIL	11	Unmodified	_VWLSKEAVSIL_					0	0	0		ENST00000494472.1_1_2:46378245-46386996:+|nuORF;ENSG00000171132|ENST00000306156|PRKCE	ENST00000494472.1_1_2:46378245-46386996:+|nuORF	ENST00000494472.1_1_2:46378245-46386996:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	622.8651733398438	2	622.866089	1243.71762	0.88915	0.00055382	-0.81681	-0.00050876	0.072344	4.5061E-05	622.8654000115959	131.71	1.5392	130.58	130.24	131.78	-1.1249					80	30	4	0	0	0	0.69808	1	10486	10486		30.318	1.1477	1	257180			63258	7175	52172	52222	69467	69467					0.10551402779788077
VWMRSPLSTF	10	Unmodified	_VWMRSPLSTF_					0	0	0		ENST00000559725.5_1_15:60656692-60682421:-|nuORF;ENST00000558985.5_1_15:60656692-60690187:-|nuORF	ENST00000559725.5_1_15:60656692-60682421:-|nuORF	ENST00000559725.5_1_15:60656692-60682421:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	612.3179931640625	2	612.315709	1222.61686	2.4117	0.0014767	-0.21579	-0.00013213	2.1959	0.0013446	612.3155034825821	116.3	1.362	116.3	115.96	117.32	0					97	29	6	0	0	0	0.022626	3	13309	13287;13309;13336		146.79	75.969	1	5796600			63259	13709	52173	52223	69468;69469;69470	69469					0.014460475252917604
VWNPRSHEKL	10	Unmodified	_VWNPRSHEKL_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MULTI-MSMS	OvCa99_classI_Rep5	1	422.5636291503906	3	422.563161	1264.66765	0.23486	9.9242E-05	-0.34013	-0.00014373	-0.10527	-4.4483E-05	422.5630035471102	46.831	1.0065	46.831	46.545	47.551	0					61	22	4	0	0	0	0.38315	2	3323	3323;3346		70.816	20.058	1	4203300			63260	7745	52174	52224	69471;69472	69471					0.045907128945145814
VWNPRSHEKL	10	Unmodified	_VWNPRSHEKL_					0	0	0		ENSG00000178252|ENST00000608424|WDR6;ENST00000471162.5_1_3:49044864-49051550:+|nuORF;ENST00000420783.7_1_3:49044839-49051550:+|nuORF	ENSG00000178252|ENST00000608424|WDR6	ENSG00000178252|ENST00000608424|WDR6	MULTI-MSMS	OvCa99_classI_Rep5	1	633.3425903320312	2	633.341104	1264.66765	0.32852	0.00020807	-0.077359	-4.8995E-05	0.25116	0.00015907	633.3409615119273	46.831	0.62099	46.831	46.587	47.208	0					26	13	2	0	0	0	0.21432	1	3332	3332		70.816	23.589	1	1110500			63261	7745	52174	52224	69473	69473					0.045907128945145814
VWPKGTKRG	9	Unmodified	_VWPKGTKRG_					0	0	0		nc|ENSG00000156650|Q8WYB5-3|KAT6B;KAT6B|p.F1803Rfs*22|1|0.06|ENSG00000156650|chr10:75030230-75030231|-/CG|frameshift_variant;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B	nc|ENSG00000156650|Q8WYB5-3|KAT6B	nc|ENSG00000156650|Q8WYB5-3|KAT6B	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.8052368164062	2	514.803626	1027.5927	-2.0559	-0.0010584	3.6282	0.0018678	1.5723	0.00080941	514.8057503809687	148.03	0.70137	146.59	146.27	146.98	-1.4351					19	13	2	0	0	0	0.64427	1	14562	14562		26.693	1.2427	1	12801			63262	5851	52175	52225	69474	69474					0.08000575153937461
VWPKGTKRG	9	Unmodified	_VWPKGTKRG_					0	0	0		nc|ENSG00000156650|Q8WYB5-3|KAT6B;KAT6B|p.F1803Rfs*22|1|0.06|ENSG00000156650|chr10:75030230-75030231|-/CG|frameshift_variant;nc|ENSG00000156650|Q8WYB5-2|KAT6B;ENSG00000156650|ENST00000287239|KAT6B	nc|ENSG00000156650|Q8WYB5-3|KAT6B	nc|ENSG00000156650|Q8WYB5-3|KAT6B	MULTI-MATCH	OvCa9_classI_Rep3	3		2	514.803626	1027.5927	-3.3588	-0.0017291	5.5456	0.0028549	2.1868	0.0011258	514.8063866459529	147.48	0.50131	146.53	146.35	146.85	-0.9512	-0.033722	0.00096384	NaN	26.693	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10664			63263	5851	52175	52225							0.08000575153937461
VWQMVVSGYF	10	Unmodified	_VWQMVVSGYF_					0	0	0		chr1:32672901-32679472|109|13.18|0.24|5.78|+|0|TE_info:MER58B,MER58B_dup97,hAT-Charlie,DNA,acceptor,+,32679472,32679558|RBBP4,None|1	chr1:32672901-32679472|109|13.18|0.24|5.78|+|0|TE_info:MER58B,MER58B_dup97,hAT-Charlie,DNA,acceptor,+,32679472,32679558|RBBP4,None|1	chr1:32672901-32679472|109|13.18|0.24|5.78|+|0|TE_info:MER58B,MER58B_dup97,hAT-Charlie,DNA,acceptor,+,32679472,32679558|RBBP4,None|1	MULTI-MSMS	OvCa9_classI_Rep3	3	608.2960815429688	2	608.296985	1214.57942	3.6539	0.0022227	-4.1113	-0.0025009	-0.45739	-0.00027823	608.2942855637167	59.026	3.3501	55.911	55.036	58.386	-3.1147					203	93	3	0	0	0	0.52321	1	1877	1877		51.335	6.9583	1	283460			63264	256	52176	52226	69475	69475					-0.01929043740301495
VWRARCGEL	9	Carbamidomethyl (C)	_VWRARC(Carbamidomethyl (C))GEL_	VWRARC(1)GEL		VWRARC(66)GEL		0	1	0			REV__ENST00000441302.6_1_3:39142056-39149053:-|nuORF	REV__ENST00000441302.6_1_3:39142056-39149053:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	573.7962646484375	2	573.795475	1145.5764	1.2843	0.00073691	0.52116	0.00029904	1.8054	0.0010359	573.7956015018508	147.52	1.6122	147.52	147.21	148.82	0					77	32	4	0	0	0	0.27546	1	17246	17246		65.803	10.299	1	871400	+		63265	25843	52177	52227	69476	69476	319				0.009431259255279656
VWRCAQRGAVV	11	Unmodified	_VWRCAQRGAVV_					0	0	0			REV__ENSG00000174332|ENST00000628545|GLIS1	REV__ENSG00000174332|ENST00000628545|GLIS1	MULTI-MSMS	OvCa99_classI_Rep5	1	622.83935546875	2	622.837674	1243.66079	-0.89192	-0.00055552	2.9102	0.0018126	2.0183	0.0012571	622.8394405183653	25.618	0.54994	25.618	25.442	25.992	0					27	10	4	0	0	0	0.72459	1	606	606		20.947	0.95016	1	737010	+		63266	21825	52178	52228	69477	69477					0.04871076742279001
VWRRRFKKRQN	11	Unmodified	_VWRRRFKKRQN_					0	0	0			REV__nc|ENSG00000106484|Q5EB52-2|MEST	REV__nc|ENSG00000106484|Q5EB52-2|MEST	MULTI-MSMS	OvCa9_classI_Rep3	3	525.644287109375	3	525.314803	1572.92258	-7.2846	-0.0038267	-1.2656	-0.00066485	-8.5502	-0.0044916	525.6483283454108	164	0.80278	162.6	161.94	162.74	-1.3925					51	19	3	0	0	0	0.72582	1	14284	14284		3.6191	0.21035	1	737400	+		63267	17806	52179	52229	69478	69478					0.15903619153391446
VWSAVALVTCV	11	Unmodified	_VWSAVALVTCV_					0	0	0			REV__ENSG00000221938|ENST00000641068|OR2A14	REV__ENSG00000221938|ENST00000641068|OR2A14	MULTI-MSMS	OvCa99_classI_Rep5	1	574.3112182617188	2	574.312635	1146.61072	-0.86324	-0.00049577	-1.8899	-0.0010854	-2.7531	-0.0015811	574.3114179844582	28.66	1.0966	28.66	28.439	29.536	0					45	21	3	0	0	0	0.69808	1	947	947		30.318	2.4355	1	418320	+		63268	23348	52180	52230	69479	69479					0.04327529293777843
VWSCIQLFF	9	Carbamidomethyl (C)	_VWSC(Carbamidomethyl (C))IQLFF_	VWSC(1)IQLFF		VWSC(49)IQLFF		0	1	0			REV__ENST00000374994.8_2_9:101911597-101911711:+|nuORF	REV__ENST00000374994.8_2_9:101911597-101911711:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	400.5364074707031	3	400.535444	1198.5845	0.8917	0.00035716	-2.2018	-0.0008819	-1.3101	-0.00052474	400.5346686619648	72.817	2.4545	69.421	69.009	71.464	-3.3961					103	50	5	0	0	0	0.42676	1	5619	5619		49.442	8.3615	1	555120	+		63269	25077	52181	52231	69480	69480	306				-0.006847398777154012
VWSCIQLFF	9	Carbamidomethyl (C)	_VWSC(Carbamidomethyl (C))IQLFF_					0	1	0			REV__ENST00000374994.8_2_9:101911597-101911711:+|nuORF	REV__ENST00000374994.8_2_9:101911597-101911711:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		3	400.535444	1198.5845	1.3218	0.00052944	-1.631	-0.00065326	-0.30913	-0.00012382	400.5346912416706	71.663	2.1764	69.061	68.633	70.81	-2.6023	-0.11496	0.00059477	NaN	49.442	103	43	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	367960	+		63270	25077	52181	52231			306				-0.006847398777154012
VWSDVTPLRF	10	Unmodified	_VWSDVTPLRF_					0	0	0		nc|ENSG00000087245|P08253-2|MMP2;nc|ENSG00000087245|P08253-3|MMP2;ENSG00000087245|ENST00000219070|MMP2	nc|ENSG00000087245|P08253-2|MMP2	nc|ENSG00000087245|P08253-2|MMP2	MULTI-MSMS	OvCa99_classI_Rep5	1	610.32861328125	2	610.327131	1218.63971	2.6327	0.0016068	-0.10086	-6.1556E-05	2.5318	0.0015452	610.3271215555296	121.06	0.87425	121.06	120.74	121.61	0					52	19	3	0	0	0	0.41036	1	13934	13934		66.962	15.626	1	868900			63271	1767	52182	52232	69481	69481					0.039133899144189854
VWSDVTPLTF	10	Unmodified	_VWSDVTPLTF_					0	0	0		chr22:23779368-23780359|404|73.22|0.78|6.56|+|ENST00000437086|MMP11,MMP11;ENST00000465385.5_1_22:24122222-24125728:+|nuORF;ENSG00000099953|ENST00000215743|MMP11	chr22:23779368-23780359|404|73.22|0.78|6.56|+|ENST00000437086|MMP11,MMP11	chr22:23779368-23780359|404|73.22|0.78|6.56|+|ENST00000437086|MMP11,MMP11	MULTI-MSMS	OvCa99_classI_Rep5	1	582.8021240234375	2	582.800414	1163.58628	1.1315	0.00065944	0.43462	0.0002533	1.5661	0.00091273	582.8006818033648	147.53	6.6763	147.53	147.01	153.69	0					349	139	4	0	0	0	0.086943	2	17274	17274;17298		116.9	45.026	1	20317000			63272	465	52183	52233	69482;69483	69482					0.011025924118939656
VWSVVPSEP	9	Unmodified	_VWSVVPSEP_					0	0	0			REV__chr9:136979299-136979925|176|15.05|0.0|20.52|+|1|PTGDS,None|1	REV__chr9:136979299-136979925|176|15.05|0.0|20.52|+|1|PTGDS,None|1	MULTI-MSMS	OvCa99_classI_Rep5	1	500.2681884765625	2	500.260925	998.507297	1.3743	0.00068751	0.40391	0.00020206	1.7782	0.00088957	500.2609959121263	147.53	1.7605	147.53	147.21	148.97	0					83	35	4	0	0	0	0.29717	1	17241	17241		63.306	4.5243	1	1454700	+		63273	16123	52184	52234	69484	69484					0.007983651776271472
VWTLSPAPE	9	Unmodified	_VWTLSPAPE_					0	0	0			REV__nc|ENSG00000139915|Q7Z553-2|MDGA2	REV__nc|ENSG00000139915|Q7Z553-2|MDGA2	MULTI-MSMS	OvCa99_classI_Rep5	1	500.2622375488281	2	500.260925	998.507297	1.3743	0.00068751	0.40391	0.00020206	1.7782	0.00088957	500.2609959121263	147.53	1.7605	147.53	147.21	148.97	0					83	35	4	0	0	0	0.55588	1	17428	17428		37.159	1.5408	1	1454700	+		63274	19643	52185	52235	69485	69485					0.007983651776157785
VWVKNLKAS	9	Unmodified	_VWVKNLKAS_					0	0	0			REV__tr|A0A7D6ZXC1|A0A7D6ZXC1_9CLOTCation:protonantiporterOS=ClostridiumintestinaleOX=36845GN=HZF06_12775PE=4SV=1	REV__tr|A0A7D6ZXC1|A0A7D6ZXC1_9CLOTCation:protonantiporterOS=ClostridiumintestinaleOX=36845GN=HZF06_12775PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	522.8119506835938	2	522.813659	1043.61277	-5.1563	-0.0026958	0.99532	0.00052037	-4.161	-0.0021754	522.8140763744603	152.4	1.0707	151.42	151.09	152.16	-0.97299					54	21	4	0	0	0	0.67509	1	12993	12993		23.042	1.0826	1	172960	+		63275	32325	52186	52236	69486	69486					0.09270326093883341
VWVPFIYS	8	Unmodified	_VWVPFIYS_					0	0	0		ENSG00000143815|ENST00000272163|LBR;ENST00000424022.2_1_1:225594357-225599062:-|nuORF	ENSG00000143815|ENST00000272163|LBR	ENSG00000143815|ENST00000272163|LBR	MULTI-MSMS	OvCa99_classI_Rep5	1	505.7724304199219	2	505.770929	1009.5273	0.87442	0.00044226	1.1917	0.00060273	2.0661	0.001045	505.771376896317	157.73	1.3421	157.73	157.45	158.79	0					66	27	4	0	0	0	0.31268	2	18493	18471;18493		104.94	20.029	1	746880			63276	5098	52187	52237	69487;69488	69488					0.02292160908234564
VWVRSVLL	8	Unmodified	_VWVRSVLL_					0	0	0		ENST00000451139.6_1_3:197687092-197702992:+|nuORF;nc|ENSG00000185621|Q96KR4|LMLN;ENSG00000185621|ENST00000420910|LMLN	ENST00000451139.6_1_3:197687092-197702992:+|nuORF	ENST00000451139.6_1_3:197687092-197702992:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	486.3052673339844	2	486.30547	970.596387	-1.0237	-0.00049782	0.68907	0.0003351	-0.3346	-0.00016272	486.3057082440577	120.4	1.6293	120.23	119.94	121.57	-0.17138					88	32	4	0	0	0	0.7224	1	11599	11599		38.806	1.7777	1	594410			63277	8268	52188	52238	69489	69489					0.10991244927799926
VWWLMPII	8	Unmodified	_VWWLMPII_					0	0	0		ENST00000358015.7_1_9:110093483-110093591:+|nuORF	ENST00000358015.7_1_9:110093483-110093591:+|nuORF	ENST00000358015.7_1_9:110093483-110093591:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2883911132812	2	529.298799	1056.58304	1.9464	0.0010302	-0.7384	-0.00039083	1.208	0.00063937	529.298369487956	101.17	0.71095	101.17	100.86	101.57	0					38	16	3	0	0	0	0.028476	1	11252	11252		54.895	0	1	3663800			63278	10726	52189	52239	69490	69490					0.05701670824191751
VWYDPEGY	8	Unmodified	_VWYDPEGY_					0	0	0		ENSG00000144452|ENST00000272895|ABCA12;nc|ENSG00000144452|Q86UK0-2|ABCA12	ENSG00000144452|ENST00000272895|ABCA12	ENSG00000144452|ENST00000272895|ABCA12	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.2835693359375	2	514.721633	1027.42871	-1.8428	-0.00094853	-1.9952	-0.001027	-3.838	-0.0019755	514.7207627677096	107.39	0.46822	105.51	105.22	105.69	-1.8785					16	8	3	0	0	0	0.028476	1	9812	9812		19.36	0	1	27458			63279	5152	52190	52240	69491	69491					-0.08390487127485358
VWYHKWKRRTA	11	Unmodified	_VWYHKWKRRTA_					0	0	0			REV__ENSG00000156299|ENST00000541036|TIAM1	REV__ENSG00000156299|ENST00000541036|TIAM1	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.9559631347656	3	510.952872	1529.83679	-1.5671	-0.00080073	4.2257	0.0021592	2.6586	0.0013584	510.95512626214276	48.846	2.2344	45.738	45.399	47.634	-3.1077					150	42	6	0	0	0	0.72524	1	2732	2732		12.433	1.8709	1	3416900	+		63280	20472	52191	52241	69492	69492					0.09306034247856587
VYAAHTNLDVA	11	Unmodified	_VYAAHTNLDVA_					0	0	0		tr|A0A553SKP3|A0A553SKP3_NIACIGTPcyclohydrolase1type2homologOS=NialliacirculansOX=1397GN=CEQ21_19105PE=3SV=1	tr|A0A553SKP3|A0A553SKP3_NIACIGTPcyclohydrolase1type2homologOS=NialliacirculansOX=1397GN=CEQ21_19105PE=3SV=1	tr|A0A553SKP3|A0A553SKP3_NIACIGTPcyclohydrolase1type2homologOS=NialliacirculansOX=1397GN=CEQ21_19105PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	587.2958984375	2	587.29857	1172.58259	-1.7713	-0.0010403	-4.2549	-0.0024989	-6.0262	-0.0035392	587.2959419520926	118.58	1.9781	118.43	118.08	120.06	-0.14754					123	39	5	0	0	0	0.69081	1	11448	11448		32.812	3.6629	1	499840			63281	33638	52192	52242	69493	69493					0.003199226380274922
VYAALQRQLL	10	Unmodified	_VYAALQRQLL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	OvCa99_classI_Rep5	1	587.8534545898438	2	587.850773	1173.68699	1.9875	0.0011683	-1.3748	-0.00080816	0.61272	0.00036019	587.8509616242039	96.745	0.97933	96.745	96.418	97.397	0					59	22	3	0	0	0	0.18827	1	10586	10586		96.19	37.961	1	3296500			63282	7740	52193	52243	69494	69494					0.10709669185393977
VYADKLLNI	9	Unmodified	_VYADKLLNI_					0	0	0		ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2;ENST00000560620.1_1_15:44806831-44810879:+|nuORF	ENSG00000137770|ENST00000260327|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	MULTI-MSMS	OvCa99_classI_Rep5	1	524.8082885742188	2	524.8055	1047.59645	-0.25441	-0.00013352	-3.0272	-0.0015887	-3.2816	-0.0017222	524.8054238105832	105.29	1.1803	105.29	104.74	105.92	0					57	26	4	0	0	0	0.1149	1	11831	11831		93.143	2.7734	1	2864500			63283	4615	52194	52244	69495	69495					0.07455200137110296
VYADKLLNI	9	Unmodified	_VYADKLLNI_					0	0	0		ENSG00000137770|ENST00000260327|CTDSPL2;nc|ENSG00000137770|Q05D32-2|CTDSPL2;ENST00000560620.1_1_15:44806831-44810879:+|nuORF	ENSG00000137770|ENST00000260327|CTDSPL2	ENSG00000137770|ENST00000260327|CTDSPL2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	524.8055	1047.59645	-0.14213	-7.459E-05	0.86632	0.00045465	0.72419	0.00038006	524.8058061219327	106.01	1.3942	105.57	105.35	106.74	-0.43642	0.1401	0.0012918	NaN	93.143	38	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35489			63284	4615	52194	52244							0.07455200137110296
VYADQPHIF	9	Unmodified	_VYADQPHIF_					0	0	0		ENSG00000100439|ENST00000428304|ABHD4	ENSG00000100439|ENST00000428304|ABHD4	ENSG00000100439|ENST00000428304|ABHD4	MULTI-MSMS	OvCa99_classI_Rep5	1	545.2730712890625	2	545.271824	1088.5291	2.6425	0.0014409	-0.78683	-0.00042904	1.8557	0.0010119	545.2713260495149	89.377	2.2131	89.377	88.922	91.135	0					112	54	4	0	0	0	0.030815	2	9544	9544;9574		134.81	26.723	1	16166000			63285	2069	52195	52245	69496;69497	69496					-0.011628300738266262
VYAEVSRLLL	10	Unmodified	_VYAEVSRLLL_					0	0	0		ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	ENSG00000114999|ENST00000233336|TTL	MULTI-MSMS	OvCa99_classI_Rep5	1	581.8461303710938	2	581.845156	1161.67576	1.4232	0.00082806	-0.1024	-5.9579E-05	1.3208	0.00076848	581.845004436499	117.15	0.88613	117.15	116.91	117.79	0					39	18	3	0	0	0	0.49595	1	13407	13407		54.722	5.1863	1	1072000			63286	3056	52196	52246	69498	69498					0.10138847091275238
VYAFPFAHW	9	Unmodified	_VYAFPFAHW_					0	0	0		ENSG00000148734|ENST00000277942|NPFFR1	ENSG00000148734|ENST00000277942|NPFFR1	ENSG00000148734|ENST00000277942|NPFFR1	MULTI-MSMS	OvCa99_classI_Rep5	1	569.2813720703125	2	569.279452	1136.54435	2.0356	0.0011588	0.36155	0.00020582	2.3971	0.0013646	569.2795098950963	133.91	0.75842	133.91	133.58	134.34	0					47	15	4	0	0	0	0.088217	2	15567	15567;15591		100.36	50.919	1	945690			63287	5422	52197	52247	69499;69500	69499					-0.01845918485992115
VYAHIYHQHF	10	Unmodified	_VYAHIYHQHF_					0	0	0		ENST00000497054.5_1_2:74386211-74405801:-|nuORF;ENSG00000173542|ENST00000309395|MOB1B;ENSG00000114978|ENST00000396049|MOB1A;nc|ENSG00000173542|Q7L9L4-2|MOB1B	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	ENST00000497054.5_1_2:74386211-74405801:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	439.2201232910156	3	438.884123	1313.63054	0.63565	0.00027898	-0.53131	-0.00023318	0.10434	4.5793E-05	439.21824552996753	53.87	1.5909	53.87	53.432	55.023	0					91	37	4	0	0	0	0.24425	2	4313	4313;4345		87.696	43.057	1	7467500			63288	3052	52198	52248	69501;69502	69501					-0.013729586512681635
VYAILTHGI	9	Unmodified	_VYAILTHGI_					0	0	0		ENSG00000229937|ENST00000506618|PRPS1L1;PRPS1|p.H283Lfs*9|1|0.25|ENSG00000147224|chrX:107647748-107647749|-/T|frameshift_variant;ENSG00000147224|ENST00000372435|PRPS1;nc|ENSG00000147224|P60891-2|PRPS1;ENSG00000101911|ENST00000380668|PRPS2;nc|ENSG00000101911|P11908-2|PRPS2	ENSG00000229937|ENST00000506618|PRPS1L1	ENSG00000229937|ENST00000506618|PRPS1L1	MULTI-MSMS	OvCa99_classI_Rep5	1	493.7882080078125	2	493.78711	985.559667	1.9805	0.00097797	0.51007	0.00025187	2.4906	0.0012298	493.7871058583796	99.77	1.0796	99.77	99.529	100.61	0					46	25	2	0	0	0	0.0078567	2	11053	11023;11053		198.32	106.13	1	4370700			63289	9284	52199	52249	69503;69504	69504					0.06630948311226348
VYAIVATLLI	10	Unmodified	_VYAIVATLLI_					0	0	0		ENST00000515876.5_1_4:941527-949679:+|nuORF;ENST00000452360.6_1_4:942397-950358:+|nuORF;nc|ENSG00000127419|Q9BSA9-2|TMEM175;ENSG00000127419|ENST00000264771|TMEM175	ENST00000515876.5_1_4:941527-949679:+|nuORF	ENST00000515876.5_1_4:941527-949679:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	538.3423461914062	2	538.341718	1074.66888	0.83281	0.00044834	0.98277	0.00052907	1.8156	0.00097741	538.3421353911075	132.05	1.1776	132.05	131.72	132.89	0					56	24	4	0	0	0	0.20267	1	15352	15352		94.006	3.2298	1	804070			63290	3831	52200	52250	69505	69505					0.13453534210702855
VYAKLLHRY	9	Unmodified	_VYAKLLHRY_					0	0	0		nc|ENSG00000103264|Q5XUX0-2|FBXO31;ENSG00000103264|ENST00000311635|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	MULTI-MSMS	OvCa99_classI_Rep5	1	581.8421630859375	2	581.840208	1161.66586	-0.4215	-0.00024524	0.1572	9.1467E-05	-0.26429	-0.00015378	581.8402909153091	52.934	0.95515	52.934	52.653	53.609	0					53	21	4	0	0	0	0.18193	1	4178	4178		79.451	43.833	1	2952300			63291	2301	52201	52251	69506	69506					0.0914970387655103
VYAQKHQQL	9	Unmodified	_VYAQKHQQL_					0	0	0		nc|ENSG00000197323|Q9UPN9-2|TRIM33;ENSG00000197323|ENST00000358465|TRIM33	nc|ENSG00000197323|Q9UPN9-2|TRIM33	nc|ENSG00000197323|Q9UPN9-2|TRIM33	MULTI-MSMS	OvCa99_classI_Rep5	1	557.8031616210938	2	557.803823	1113.59309	-0.16783	-9.3615E-05	-0.55914	-0.00031189	-0.72696	-0.0004055	557.8034857887963	33.705	0.91438	33.705	33.483	34.398	0					60	18	6	0	0	0	0.085069	2	1558	1558;1582		101.21	48.275	1	4301500			63292	8701	52202	52252	69507;69508	69507					0.04083950083122545
VYAQKLGVNI	10	Unmodified	_VYAQKLGVNI_					0	0	0		tr|A0A553SNS3|A0A553SNS3_NIACIProteinRecAOS=NialliacirculansOX=1397GN=recAPE=3SV=1	tr|A0A553SNS3|A0A553SNS3_NIACIProteinRecAOS=NialliacirculansOX=1397GN=recAPE=3SV=1	tr|A0A553SNS3|A0A553SNS3_NIACIProteinRecAOS=NialliacirculansOX=1397GN=recAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	552.8237915039062	2	552.824224	1103.63389	1.4579	0.00080598	-1.5531	-0.00085861	-0.095196	-5.2626E-05	552.8231418896985	126.07	1.3319	125.83	125.55	126.89	-0.2359					72	26	4	0	0	0	0.52321	1	12312	12312		51.335	10.557	1	197830			63293	33953	52203	52253	69509	69509					0.08622291402753035
VYAQVARLF	9	Unmodified	_VYAQVARLF_					0	0	0		ENSG00000169375|ENST00000394947|SIN3A;ENST00000394947.7_1_15:75702535-75702580:-|nuORF	ENSG00000169375|ENST00000394947|SIN3A	ENSG00000169375|ENST00000394947|SIN3A	MULTI-MSMS	OvCa99_classI_Rep5	1	533.806640625	2	533.805834	1065.59712	0.72215	0.00038549	0.42975	0.0002294	1.1519	0.00061489	533.8059696231561	105.6	1.4055	105.6	105.31	106.72	0					77	31	4	0	0	0	0.01029	2	11848	11848;11872		167.82	85.519	1	6599700			63294	7004	52204	52254	69510;69511	69510					0.06694039576836985
VYASDRATF	9	Unmodified	_VYASDRATF_					0	0	0		nc|ENSG00000198721|O75521-2|ECI2;ENSG00000198721|ENST00000380118|ECI2;ENST00000464583.5_1_6:4119386-4125894:-|nuORF;ENST00000496241.6_1_6:4116110-4130478:-|nuORF;ENST00000464057.5_1_6:4116110-4125894:-|nuORF;ENST00000380120.6_1_6:4116110-4130812:-|nuORF	nc|ENSG00000198721|O75521-2|ECI2	nc|ENSG00000198721|O75521-2|ECI2	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.294189453125	2	515.253631	1028.49271	-0.62398	-0.00032151	0.7234	0.00037274	0.099419	5.1226E-05	515.2539224812423	61.763	0.99845	61.763	61.542	62.541	0					59	23	5	0	0	0	0.027255	1	5482	5482		72.879	14.097	1	6291300			63295	8856	52205	52255	69512	69512					-0.020397069705495596
VYATCPQLQL	10	Unmodified	_VYATCPQLQL_					0	0	0			REV__nc|ENSG00000204314|Q99946-2|PRRT1	REV__nc|ENSG00000204314|Q99946-2|PRRT1	MULTI-MSMS	OvCa99_classI_Rep5	1	568.2937622070312	2	568.294442	1134.57433	0.84516	0.0004803	1.0832	0.00061558	1.9284	0.0010959	568.2952088350829	151.8	0.61595	151.8	151.45	152.07	0					23	12	3	0	0	0	0.52439	1	17785	17785		51.193	3.2332	1	165470	+		63296	23142	52206	52256	69513	69513					0.012426523970816561
VYAVIPAEKF	10	Unmodified	_VYAVIPAEKF_					0	0	0		ENST00000474020.5_1_1:47118240-47133739:-|nuORF;nc|ENSG00000123472|Q5TC12-2|ATPAF1;nc|ENSG00000123472|Q5TC12-3|ATPAF1;ENSG00000123472|ENST00000574428|ATPAF1	ENST00000474020.5_1_1:47118240-47133739:-|nuORF	ENST00000474020.5_1_1:47118240-47133739:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.294677734375	2	568.82115	1135.62775	0.78148	0.00044452	1.1123	0.00063268	1.8937	0.0010772	568.8218323282522	101.47	1.1869	101.47	100.98	102.17	0					65	27	4	0	0	0	0.026694	1	11270	11270		63.534	17.582	1	3312800			63297	3596	52207	52257	69514	69514					0.06535773171231085
VYAVIRFLR	9	Unmodified	_VYAVIRFLR_					0	0	0		ENSG00000197860|ENST00000381007|SGTB	ENSG00000197860|ENST00000381007|SGTB	ENSG00000197860|ENST00000381007|SGTB	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.294677734375	2	568.850576	1135.6866	2.3049	0.0013111	-0.12487	-7.1032E-05	2.18	0.0012401	568.8504371663732	101.2	0.67049	101.2	100.86	101.53	0					22	15	2	0	0	0	0.027462	1	11270	11270		45.952	28.587	1	249940			63298	8754	52208	52258	69515	69515					0.12418294256212903
VYCIVLNFI	9	Unmodified	_VYCIVLNFI_					0	0	0			REV__tr|A0A7D6W2P7|A0A7D6W2P7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07125PE=4SV=1	REV__tr|A0A7D6W2P7|A0A7D6W2P7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07125PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	542.2849731445312	2	542.298996	1082.58344	1.6848	0.00091369	-0.32757	-0.00017764	1.3573	0.00073605	542.2984909910541	112.47	0.81404	112.47	112.11	112.92	0					25	17	2	0	0	0	0.30002	1	12800	12800		62.978	8.2138	1	134580	+		63299	31904	52209	52259	69516	69516					0.045450457533888766
VYCNKPVMT	9	Unmodified	_VYCNKPVMT_					0	0	0			REV__ENSG00000135587|ENST00000258052|SMPD2	REV__ENSG00000135587|ENST00000258052|SMPD2	MULTI-MSMS	OvCa99_classI_Rep5	1	527.758056640625	2	527.756638	1053.49872	-0.53102	-0.00028025	-0.035404	-1.8685E-05	-0.56643	-0.00029894	527.7566362367842	68.495	1.1906	68.495	68.077	69.268	0					42	28	2	0	0	0	0.31747	1	6482	6482		60.972	2.19	1	2022700	+		63300	19301	52210	52260	69517	69517					-0.02588648054870646
VYCNKPVMT	9	Unmodified	_VYCNKPVMT_					0	0	0			REV__ENSG00000135587|ENST00000258052|SMPD2	REV__ENSG00000135587|ENST00000258052|SMPD2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	527.756638	1053.49872	-1.7452	-0.00092106	-3.94	-0.0020794	-5.6852	-0.0030004	527.7542242584233	71.871	0.38409	68.415	68.222	68.607	-3.4563	-0.040215	-0.0038797	NaN	60.972	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13371	+		63301	19301	52210	52260							-0.02588648054870646
VYCYRAAIGSV	11	Unmodified	_VYCYRAAIGSV_					0	0	0		ENST00000508669.1_1_4:517631-521020:+|nuORF;nc|ENSG00000174227|Q5H8A4-3|PIGG;nc|ENSG00000174227|Q5H8A4-2|PIGG;ENSG00000174227|ENST00000453061|PIGG;ENST00000503261.5_1_4:520855-527658:+|nuORF	ENST00000508669.1_1_4:517631-521020:+|nuORF	ENST00000508669.1_1_4:517631-521020:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	601.63720703125	2	601.305341	1200.59613	1.1691	0.00070297	-0.6337	-0.00038105	0.53537	0.00032192	601.807152574832	154	1.6793	154	153.05	154.72	0					52	33	2	0	0	0	0.025594	1	17943	17943		49.536	11.725	1	41696			63302	7448	52211	52261	69518	69518					0.003854571456031408
VYDDLKYVW	9	Unmodified	_VYDDLKYVW_					0	0	0		nc|ENSG00000102032|P51606-2|RENBP;nc|ENSG00000102032|P51606-3|RENBP;ENSG00000102032|ENST00000393700|RENBP	nc|ENSG00000102032|P51606-2|RENBP	nc|ENSG00000102032|P51606-2|RENBP	MULTI-MSMS	OvCa99_classI_Rep5	1	600.80078125	2	600.800414	1199.58628	0.67128	0.00040331	1.7735	0.0010655	2.4448	0.0014689	600.8014221828967	114.26	0.63663	114.26	113.97	114.6	0					35	13	3	0	0	0	0.42048	1	13036	13036		60.118	10.907	1	1290700			63303	2218	52212	52262	69519	69519					-0.005534075881087119
VYDIEYKEF	9	Unmodified	_VYDIEYKEF_					0	0	0			REV__tr|A0A7D6ZT72|A0A7D6ZT72_9CLOTdTDP-glucose4,6-dehydrataseOS=ClostridiumintestinaleOX=36845GN=rfbBPE=3SV=1	REV__tr|A0A7D6ZT72|A0A7D6ZT72_9CLOTdTDP-glucose4,6-dehydrataseOS=ClostridiumintestinaleOX=36845GN=rfbBPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	603.294921875	2	603.289879	1204.56521	3.0339	0.0018303	2.9246	0.0017644	5.9585	0.0035947	603.2913324545489	97.27	1.3723	97.27	97.18	98.552	0					59	31	2	0	0	0	0.33652	1	10698	10698		58.782	5.4305	1	2059600	+		63304	32199	52213	52263	69520	69520					-0.028894176876292477
VYDKPALKSI	10	Unmodified	_VYDKPALKSI_					0	0	0			REV__ENSG00000164880|ENST00000404767|INTS1	REV__ENSG00000164880|ENST00000404767|INTS1	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3291015625	2	567.331882	1132.64921	-1.6483	-0.00093515	-2.1618	-0.0012264	-3.8101	-0.0021616	567.3305014697371	141.66	3.9446	141.43	139.35	143.3	-0.22697					200	79	3	0	0	0	0.75313	1	14171	14171		24.519	1.4767	1	83872	+		63305	21030	52214	52264	69521	69521					0.08819158199935373
VYDLFLVRC	9	Unmodified	_VYDLFLVRC_					0	0	0			REV__nc|ENSG00000161405|Q9UKT9-16|IKZF3	REV__nc|ENSG00000161405|Q9UKT9-16|IKZF3	MULTI-MSMS	OvCa99_classI_Rep5	1	564.2988891601562	2	564.299527	1126.5845	1.347	0.00076012	3.9367	0.0022215	5.2837	0.0029816	564.3018330406637	139.52	0.8002	139.52	139.32	140.12	0					24	16	2	0	0	0	0.56889	1	16294	16294		35.618	1.4457	1	84277	+		63306	20696	52215	52265	69522	69522					0.02627260122289954
VYDLQLEKL	9	Unmodified	_VYDLQLEKL_					0	0	0			REV__tr|A0A553SUM0|A0A553SUM0_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_01415PE=4SV=1	REV__tr|A0A553SUM0|A0A553SUM0_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_01415PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	561.3212890625	2	560.816064	1119.61758	-1.3604	-0.00076296	2.8081	0.0015748	1.4476	0.00081186	561.3196477735637	103.85	1.0667	103.85	103.47	104.54	0					49	24	3	0	0	0	0.48047	1	11621	11621		44.377	1.5129	1	4383300	+		63307	31094	52216	52266	69523	69523					0.06255165445986677
VYDPLFSQL	9	Unmodified	_VYDPLFSQL_					0	0	0		ENSG00000100104|ENST00000215917|SRRD	ENSG00000100104|ENST00000215917|SRRD	ENSG00000100104|ENST00000215917|SRRD	MULTI-MSMS	OvCa99_classI_Rep5	1	541.2831420898438	2	541.281857	1080.54916	0.98723	0.00053437	1.117	0.00060464	2.1043	0.001139	541.2822702722539	142.51	1.6747	142.51	142.23	143.91	0					66	33	4	0	0	0	0.018335	1	16652	16652		148.99	85.681	1	958130			63308	2008	52217	52267	69524	69524					0.012109208661286175
VYDPVSEYK	9	Unmodified	_VYDPVSEYK_					0	0	0		ENSG00000063601|ENST00000445323|MTMR1;nc|ENSG00000063601|Q13613|MTMR1;nc|ENSG00000063601|Q13613-2|MTMR1	ENSG00000063601|ENST00000445323|MTMR1	ENSG00000063601|ENST00000445323|MTMR1	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.2664794921875	2	550.268947	1098.52334	0.207	0.00011391	-3.9203	-0.0021572	-3.7133	-0.0020433	550.2666821383556	141.99	0.84273	140.52	140.29	141.13	-1.4627					37	15	3	0	0	0	0.55588	1	13892	13892		37.159	2.9866	1	91853			63309	1290	52218	52268	69525	69525					-0.0219797337615546
VYDPVSEYK	9	Unmodified	_VYDPVSEYK_					0	0	0		ENSG00000063601|ENST00000445323|MTMR1;nc|ENSG00000063601|Q13613|MTMR1;nc|ENSG00000063601|Q13613-2|MTMR1	ENSG00000063601|ENST00000445323|MTMR1	ENSG00000063601|ENST00000445323|MTMR1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	550.268947	1098.52334	-0.84825	-0.00046677	-3.3467	-0.0018416	-4.1949	-0.0023083	550.2669987075811	141.01	0.74165	140.78	140.48	141.22	-0.22697	0.15631	-0.00073796	NaN	37.159	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41418			63310	1290	52218	52268							-0.0219797337615546
VYDPVSEYK	9	Unmodified	_VYDPVSEYK_					0	0	0		ENSG00000063601|ENST00000445323|MTMR1;nc|ENSG00000063601|Q13613|MTMR1;nc|ENSG00000063601|Q13613-2|MTMR1	ENSG00000063601|ENST00000445323|MTMR1	ENSG00000063601|ENST00000445323|MTMR1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	550.268947	1098.52334	-2.829	-0.0015567	-1.3466	-0.00074101	-4.1756	-0.0022977	550.2681553961999	141.58	0.99057	140.57	140.24	141.23	-1.0106	-0.05591	0.0014632	NaN	37.159	29	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51542			63311	1290	52218	52268							-0.0219797337615546
VYDYKNMNNL	10	Unmodified	_VYDYKNMNNL_					0	0	0			REV__nc|ENSG00000160209|O00764-2|PDXK	REV__nc|ENSG00000160209|O00764-2|PDXK	MULTI-SECPEP	OvCa99_classI_Rep5	1	637.8330688476562	2	637.297713	1272.58087	1.2243	0.00078022	-2.7567	-0.0017569	-1.5325	-0.00097664	637.7981581632222	124.29	0.31966	124.29	124.15	124.47	0					8	6	2	0	0	0	0.026931	1	14333	14333		37.812	4.9991	1	43075	+		63312	20647	52219	52269	69526	69526					-0.04451454442209979
VYEKNSHEK	9	Unmodified	_VYEKNSHEK_					0	0	0		tr|A0A7D6VQ64|A0A7D6VQ64_9CLOTserine-typeD-Ala-D-AlacarboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14395PE=3SV=1	tr|A0A7D6VQ64|A0A7D6VQ64_9CLOTserine-typeD-Ala-D-AlacarboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14395PE=3SV=1	tr|A0A7D6VQ64|A0A7D6VQ64_9CLOTserine-typeD-Ala-D-AlacarboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14395PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	567.2871704101562	2	567.28292	1132.55129	-0.36211	-0.00020542	3.1078	0.001763	2.7457	0.0015576	567.2845471468767	65.406	0.75632	65.406	65.111	65.867	0					46	18	3	0	0	0	0.12515	1	5995	5995		90.37	2.6155	1	7349500			63313	34823	52220	52270	69527	69527					-0.009686503960438131
VYEKNSHEK	9	Unmodified	_VYEKNSHEK_					0	0	0		tr|A0A7D6VQ64|A0A7D6VQ64_9CLOTserine-typeD-Ala-D-AlacarboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14395PE=3SV=1	tr|A0A7D6VQ64|A0A7D6VQ64_9CLOTserine-typeD-Ala-D-AlacarboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14395PE=3SV=1	tr|A0A7D6VQ64|A0A7D6VQ64_9CLOTserine-typeD-Ala-D-AlacarboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_14395PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	567.28292	1132.55129	0.74255	0.00042124	7.9321	0.0044997	8.6747	0.004921	567.7889716508787	68.778	0.88635	65.288	64.916	65.802	-3.4902	-0.059241	0.0045404	NaN	90.37	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37999			63314	34823	52220	52270							-0.009686503960438131
VYERELQTF	9	Unmodified	_VYERELQTF_					0	0	0		ENSG00000203791|ENST00000368836|EEF1AKMT2	ENSG00000203791|ENST00000368836|EEF1AKMT2	ENSG00000203791|ENST00000368836|EEF1AKMT2	MULTI-MSMS	OvCa99_classI_Rep5	1	592.8019409179688	2	592.800946	1183.58734	1.7818	0.0010563	0.3787	0.00022449	2.1605	0.0012808	592.801142046752	80.765	1.1247	80.765	80.529	81.654	0					49	26	2	0	0	0	0.010478	2	8308	8281;8308		167.23	74.033	1	10126000			63315	8933	52221	52271	69528;69529	69529					0.0028880678080440703
VYFLLTLLVQ	10	Unmodified	_VYFLLTLLVQ_					0	0	0		ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	ENSG00000198691|ENST00000370225|ABCA4	MULTI-SECPEP	OvCa9_classI_Rep2	2	604.8302612304688	2	604.8681	1207.72165	-0.83147	-0.00050293	-2.1638	-0.0013088	-2.9952	-0.0018117	604.8674964450709	77.402	0.20676	75.613	75.468	75.675	-1.7894					5	3	2	0	0	0	0.027214	1	6431	6431		23.042	6.5693	1	5792.7			63316	8849	52222	52272	69530	69530					0.12609492273509204
VYFLNLFNH	9	Unmodified	_VYFLNLFNH_					0	0	0		ENSG00000081087|ENST00000193322|OSTM1	ENSG00000081087|ENST00000193322|OSTM1	ENSG00000081087|ENST00000193322|OSTM1	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8038940429688	2	583.803291	1165.59203	0.9784	0.0005712	-1.5059	-0.00087913	-0.52746	-0.00030793	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.69895	1	1513	1513		18.324	5.3652	1	155970			63317	1653	52223	52273	69531	69531					0.01585735714229486
VYFLTYLM	8	Oxidation (M)	_VYFLTYLM(Oxidation (M))_		VYFLTYLM(1)		VYFLTYLM(57)	0	0	1			REV__GGNBP2|p.K134M|1|0.11|ENSG00000278311|chr17:36557309-36557309|A/T|missense_variant	REV__GGNBP2|p.K134M|1|0.11|ENSG00000278311|chr17:36557309-36557309|A/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	533.2722778320312	2	533.269904	1064.52526	1.8272	0.00097439	3.4725	0.0018518	5.2997	0.0028262	533.2714892663305	87.309	1.4946	87.309	87.013	88.508	0					81	35	4	0	0	0	0.63104	1	9200	9200		57.453	8.2419	1	12003000	+		63318	28155	52224	52274	69532	69532		623			-0.0044263589190904895
VYFNWKTNK	9	Unmodified	_VYFNWKTNK_					0	0	0		tr|A0A553SSL3|A0A553SSL3_NIACINitratereductasesubunitbetaOS=NialliacirculansOX=1397GN=narHPE=4SV=1	tr|A0A553SSL3|A0A553SSL3_NIACINitratereductasesubunitbetaOS=NialliacirculansOX=1397GN=narHPE=4SV=1	tr|A0A553SSL3|A0A553SSL3_NIACINitratereductasesubunitbetaOS=NialliacirculansOX=1397GN=narHPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	600.3152465820312	2	600.314023	1198.61349	0.10657	6.3974E-05	-1.2888	-0.00077371	-1.1823	-0.00070973	600.3133222024811	101.55	3.5557	99.284	98.883	102.44	-2.2665					163	68	6	0	0	0	0.56189	1	9143	9143		36.447	1.2947	1	611890			63319	34388	52225	52275	69533	69533					0.022131207429310962
VYFPDQHINF	10	Unmodified	_VYFPDQHINF_					0	0	0		nc|ENSG00000116117|Q8TEW8-6|PARD3B;nc|ENSG00000116117|Q8TEW8-3|PARD3B;nc|ENSG00000116117|Q8TEW8-2|PARD3B;ENSG00000116117|ENST00000406610|PARD3B;nc|ENSG00000116117|Q8TEW8-5|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	nc|ENSG00000116117|Q8TEW8-6|PARD3B	MULTI-MSMS	OvCa99_classI_Rep5	1	640.3098754882812	2	640.308938	1278.60332	2.4106	0.0015435	-0.57336	-0.00036713	1.8372	0.0011764	640.3085772637795	110.65	2.3458	110.65	110.27	112.61	0					157	51	6	0	0	0	0.020903	3	12580	12535;12556;12580		146.79	64.545	1	26209000			63320	3153	52226	52276	69534;69535;69536	69536					-0.024834869822825567
VYFPKKTRR	9	Unmodified	_VYFPKKTRR_					0	0	0			REV__ENST00000463181.5_1_7:26239372-26239546:-|nuORF	REV__ENST00000463181.5_1_7:26239372-26239546:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8565063476562	2	597.858932	1193.70331	-3.1766	-0.0018991	-1.0809	-0.0006462	-4.2574	-0.0025453	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.7044	1	15257	15257		16.473	0	1	436470	+		63321	26125	52227	52277	69537	69537					0.11420795142157658
VYFRARNYI	9	Unmodified	_VYFRARNYI_					0	0	0			REV__ENSG00000103642|ENST00000261893|LACTB	REV__ENSG00000103642|ENST00000261893|LACTB	MULTI-SECPEP	OvCa99_classI_Rep5	1	601.30419921875	2	601.327465	1200.64038	1.2236	0.00073581	0.61003	0.00036683	1.8337	0.0011026	601.8295205488467	150.83	0.55128	150.83	150.44	150.99	0					20	10	3	0	0	0	0.027462	1	17678	17678		24.203	0	1	42807	+		63322	17628	52228	52278	69538	69538					0.04808229354148352
VYGCESSKPI	10	Unmodified	_VYGCESSKPI_					0	0	0			REV__ENSG00000145794|ENST00000503335|MEGF10	REV__ENSG00000145794|ENST00000503335|MEGF10	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.8067016601562	2	541.762975	1081.5114	-0.66514	-0.00036035	4.0777	0.0022092	3.4126	0.0018488	541.7648824599519	42.292	0.47164	42.292	42.111	42.583	0					15	10	2	0	0	0	0.026606	1	2704	2704		44.377	0	1	185940	+		63323	19984	52229	52279	69539	69539					-0.0260991339098382
VYGFLRNGF	9	Unmodified	_VYGFLRNGF_					0	0	0		ENST00000343327.6_1_9:115030452-115095785:-|nuORF	ENST00000343327.6_1_9:115030452-115095785:-|nuORF	ENST00000343327.6_1_9:115030452-115095785:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	536.7843627929688	2	536.782359	1071.55016	1.501	0.00080573	0.91773	0.00049262	2.4188	0.0012984	536.7828402070766	105.81	2.1619	105.81	105.44	107.6	0					118	49	5	0	0	0	0.007319	4	11896	11873;11896;11920;11940		190.71	107.42	1	24980000			63324	10597	52230	52280	69540;69541;69542;69543	69541					0.017251800257099603
VYGFVREAL	9	Unmodified	_VYGFVREAL_					0	0	0		ENSG00000167671|ENST00000301281|UBXN6;nc|ENSG00000167671|Q9BZV1-2|UBXN6;ENST00000588238.1_1_19:4446018-4446171:-|nuORF	ENSG00000167671|ENST00000301281|UBXN6	ENSG00000167671|ENST00000301281|UBXN6	MULTI-MSMS	OvCa99_classI_Rep5	1	527.2913818359375	2	527.290017	1052.56548	2.514	0.0013256	-0.17794	-9.3825E-05	2.336	0.0012318	527.2898252076614	96.276	1.5249	96.276	95.913	97.438	0					88	35	5	0	0	0	0.10502	2	10526	10526;10547		95.815	32.509	1	9423800			63325	6828	52231	52281	69544;69545	69544					0.04130046822888289
VYGKVDSF	8	Unmodified	_VYGKVDSF_					0	0	0		ENSG00000152127|ENST00000281923|MGAT5	ENSG00000152127|ENST00000281923|MGAT5	ENSG00000152127|ENST00000281923|MGAT5	MULTI-MSMS	OvCa99_classI_Rep5	1	457.7365417480469	2	457.734543	913.454533	-0.7259	-0.00033227	0.50849	0.00023276	-0.2174	-9.9514E-05	457.7346861357995	66.066	0.58727	66.066	65.904	66.491	0					30	14	3	0	0	0	0.57734	1	6109	6109		68.787	2.9837	1	1462900			63326	5605	52232	52282	69546	69546					-0.005655928851979297
VYGKVGRPIHL	11	Unmodified	_VYGKVGRPIHL_					0	0	0		tr|A0A7D6VTN2|A0A7D6VTN2_9CLOTTranscriptionalregulatoryproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08615PE=4SV=1	tr|A0A7D6VTN2|A0A7D6VTN2_9CLOTTranscriptionalregulatoryproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08615PE=4SV=1	tr|A0A7D6VTN2|A0A7D6VTN2_9CLOTTranscriptionalregulatoryproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08615PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8685913085938	2	619.87204	1237.72953	-3.8587	-0.0023919	-0.31006	-0.00019219	-4.1687	-0.0025841	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.68263	1	15247	15247		35.618	2.8059	1	492670			63327	35127	52233	52283	69547	69547					0.1201706431365892
VYGLPSCCYV	10	Carbamidomethyl (C)	_VYGLPSCC(Carbamidomethyl (C))YV_	VYGLPSC(0.002)C(0.998)YV		VYGLPSC(-27)C(27)YV		0	1	0		ENST00000337338.9_1_1:90398692-90398947:+|nuORF	ENST00000337338.9_1_1:90398692-90398947:+|nuORF	ENST00000337338.9_1_1:90398692-90398947:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	580.7572021484375	2	580.759378	1159.5042	-0.26536	-0.00015411	-3.2563	-0.0018911	-3.5217	-0.0020452	580.7574243092184	64.692	1.3315	64.692	64.334	65.665	0					84	32	5	0	0	0	0.41846	1	5916	5916		65.803	17.844	2	13706000			63328	10523	52234	52284	69548	69548	107				-0.06916969263079409
VYGLPSCCYV	10	Carbamidomethyl (C)	_VYGLPSCC(Carbamidomethyl (C))YV_					0	1	0		ENST00000337338.9_1_1:90398692-90398947:+|nuORF	ENST00000337338.9_1_1:90398692-90398947:+|nuORF	ENST00000337338.9_1_1:90398692-90398947:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	580.759378	1159.5042	0.29722	0.00017261	-4.4571	-0.0025885	-4.1599	-0.0024159	581.2585680306361	68.113	0.53526	64.623	64.43	64.965	-3.4902	-0.034569	-0.0011809	NaN	65.803	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29196			63329	10523	52234	52284			107				-0.06916969263079409
VYGLRKLHG	9	Unmodified	_VYGLRKLHG_					0	0	0			REV__TSEN54|p.S159G|1|0.11|ENSG00000182173|chr17:75519001-75519001|A/G|missense_variant	REV__TSEN54|p.S159G|1|0.11|ENSG00000182173|chr17:75519001-75519001|A/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	521.8112182617188	2	521.811451	1041.60835	-0.83564	-0.00043605	3.6163	0.001887	2.7806	0.001451	521.8134554363941	67.923	3.082	65.262	64.842	67.924	-2.661					124	61	3	0	0	0	0.62352	2	5331	5325;5331		29.15	3.6994	1	4500900	+		63330	32734	52235	52285	69549;69550	69550					0.0892086167098114
VYGLRKLHG	9	Unmodified	_VYGLRKLHG_					0	0	0			REV__TSEN54|p.S159G|1|0.11|ENSG00000182173|chr17:75519001-75519001|A/G|missense_variant	REV__TSEN54|p.S159G|1|0.11|ENSG00000182173|chr17:75519001-75519001|A/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	521.812744140625	2	521.811451	1041.60835	0.66684	0.00034797	2.3999	0.0012523	3.0667	0.0016003	521.8125550496435	68.201	4.7433	65.386	65.063	69.806	-2.8144					153	94	3	0	0	0	0.52083	1	2951	2951		40.573	1.3198	1	529900	+		63331	32734	52235	52285	69551	69551					0.0892086167098114
VYGLTRLVQL	10	Unmodified	_VYGLTRLVQL_					0	0	0			REV__ENST00000465703.5_1_6:31936641-31937206:+|nuORF	REV__ENST00000465703.5_1_6:31936641-31937206:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.8145751953125	2	581.353148	1160.69174	-0.23068	-0.00013411	-0.027012	-1.5703E-05	-0.25769	-0.00014981	581.3531105444222	63.565	0.75333	63.565	63.257	64.011	0					45	18	4	0	0	0	0.026782	1	5772	5772		54.776	6.8607	1	1888800	+		63332	26174	52236	52286	69552	69552					0.11782553328180256
VYGNIVIQKK	10	Unmodified	_VYGNIVIQKK_					0	0	0		ENSG00000175895|ENST00000315367|PLEKHF2	ENSG00000175895|ENST00000315367|PLEKHF2	ENSG00000175895|ENST00000315367|PLEKHF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	580.8155517578125	2	581.353148	1160.69174	-1.7804	-0.0010351	2.0478	0.0011905	0.26743	0.00015547	581.3548836992837	64.071	0.15942	64.071	64.011	64.17	0					5	3	2	0	0	0	0.026956	1	5800	5800		42.396	5.237	1	98574			63333	7569	52237	52287	69553	69553					0.11782553328157519
VYGPLPQSF	9	Unmodified	_VYGPLPQSF_					0	0	0		ENST00000568339.5_1_16:85840315-85840477:+|nuORF;ENST00000562929.1_1_16:85838708-85840477:+|nuORF;ENST00000564648.1_1_16:85839106-85840477:+|nuORF;ENSG00000131143|ENST00000253452|COX4I1	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	ENST00000568339.5_1_16:85840315-85840477:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	504.2655029296875	2	504.263468	1006.51238	2.0546	0.001036	0.71673	0.00036142	2.7713	0.0013975	504.26372126052865	118	0.97766	118	117.46	118.44	0					52	20	4	0	0	0	0.064985	1	13525	13525		110.12	33.273	1	1205500			63334	4046	52238	52288	69554	69554					0.009386690402379827
VYGPTFAF	8	Unmodified	_VYGPTFAF_					0	0	0			REV__tr|A0A553SJZ2|A0A553SJZ2_NIACIDNApolymeraseIIIsubunitalphaOS=NialliacirculansOX=1397GN=CEQ21_17785PE=3SV=1	REV__tr|A0A553SJZ2|A0A553SJZ2_NIACIDNApolymeraseIIIsubunitalphaOS=NialliacirculansOX=1397GN=CEQ21_17785PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	451.7701721191406	2	451.226354	900.438155	0.047209	2.1302E-05	-4.2576	-0.0019212	-4.2104	-0.0018999	451.2241983525717	70.464	0.55158	70.464	70.21	70.761	0					36	13	4	0	0	0	0.028476	1	6769	6769		39.021	1.993	1	1261100	+		63335	30059	52239	52289	69555	69555					-0.016046740512933866
VYGSFASKL	9	Unmodified	_VYGSFASKL_					0	0	0		ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	ENSG00000155096|ENST00000337198|AZIN1	MULTI-MSMS	OvCa99_classI_Rep5	1	486.2649841308594	2	486.263468	970.512382	0.56251	0.00027353	1.2005	0.00058376	1.763	0.00085729	486.26401392255445	81.338	1.3573	81.338	81.037	82.394	0					102	32	6	0	0	0	0.010478	2	8358	8358;8386		167.23	74.033	1	20024000			63336	5769	52240	52290	69556;69557	69556					0.025946690402406603
VYHDDKQPTF	10	Unmodified	_VYHDDKQPTF_					0	0	0		ENSG00000172986|ENST00000389617|GXYLT2	ENSG00000172986|ENST00000389617|GXYLT2	ENSG00000172986|ENST00000389617|GXYLT2	MULTI-MSMS	OvCa99_classI_Rep5	1	417.2009582519531	3	417.199777	1248.5775	-0.065694	-2.7407E-05	0.10162	4.2394E-05	0.035922	1.4987E-05	417.1997548191301	52.103	0.82589	52.103	51.871	52.697	0					54	18	5	0	0	0	0.58667	1	4057	4057		43.651	12.017	1	1934900			63337	7338	52241	52291	69558	69558					-0.036843812245933805
VYHDDKQPTF	10	Unmodified	_VYHDDKQPTF_					0	0	0		ENSG00000172986|ENST00000389617|GXYLT2	ENSG00000172986|ENST00000389617|GXYLT2	ENSG00000172986|ENST00000389617|GXYLT2	MULTI-MSMS	OvCa99_classI_Rep5	1	625.2974853515625	2	625.296027	1248.5775	-0.6873	-0.00042977	0.27339	0.00017095	-0.41392	-0.00025882	625.296066694777	52.105	0.87017	52.105	51.871	52.741	0					27	19	2	0	0	0	0.051894	1	4064	4064		106.68	24.378	1	1358100			63338	7338	52241	52291	69559	69559					-0.036843812245933805
VYHHLVETL	9	Unmodified	_VYHHLVETL_					0	0	0		nc|ENSG00000099998|P36269-2|GGT5;ENSG00000099998|ENST00000327365|GGT5;nc|ENSG00000099998|P36269-3|GGT5	nc|ENSG00000099998|P36269-2|GGT5	nc|ENSG00000099998|P36269-2|GGT5	MULTI-MSMS	OvCa99_classI_Rep5	1	555.8014526367188	2	555.800749	1109.58694	0.24394	0.00013558	-0.86165	-0.0004789	-0.61771	-0.00034332	555.8002380403449	64.84	1.5192	64.84	64.503	66.022	0					112	37	6	0	0	0	0.022571	3	5926	5900;5926;5972		143.97	42.289	1	14387000			63339	1992	52242	52292	69560;69561;69562	69561					0.03653431851603273
VYHILKVLF	9	Unmodified	_VYHILKVLF_					0	0	0		ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	ENSG00000070061|ENST00000374647|ELP1	MULTI-MSMS	OvCa99_classI_Rep5	1	566.3516845703125	2	566.349877	1130.6852	1.9861	0.0011248	0.10681	6.0492E-05	2.0929	0.0011853	566.349776069082	112.44	1.1747	112.44	112.2	113.38	0					77	25	4	0	0	0	0.043206	3	12808	12788;12808;12859		123.99	51.11	1	2674400			63340	1419	52243	52293	69563;69564;69565	69564					0.1250866016746386
VYHIMLQII	9	Unmodified	_VYHIMLQII_					0	0	0		ENSG00000185885|ENST00000408968|IFITM1	ENSG00000185885|ENST00000408968|IFITM1	ENSG00000185885|ENST00000408968|IFITM1	MULTI-MSMS	OvCa99_classI_Rep5	1	565.3253784179688	2	565.325545	1128.63654	1.4516	0.00082064	-3.5081	-0.0019832	-2.0564	-0.0011626	565.3233316310339	123.67	0.5957	123.67	123.28	123.87	0					32	12	3	0	0	0	0.17908	1	14261	14261		79.939	11.455	1	622450			63341	8297	52244	52294	69566	69566					0.0773642353606192
VYIAQISTV	9	Unmodified	_VYIAQISTV_					0	0	0			REV__tr|A0A553SI96|A0A553SI96_NIACIATPsynthasesubunitbetaOS=NialliacirculansOX=1397GN=atpDPE=3SV=1	REV__tr|A0A553SI96|A0A553SI96_NIACIATPsynthasesubunitbetaOS=NialliacirculansOX=1397GN=atpDPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	497.2864074707031	2	497.2844	992.554247	1.8611	0.00092551	0.27188	0.0001352	2.133	0.0010607	497.28438870452453	78.142	1.6035	78.142	77.672	79.276	0					93	38	5	0	0	0	0.12515	1	7925	7925		90.37	10.657	1	8586400	+		63342	29874	52245	52295	69567	69567					0.05767224728765541
VYICIHIHI	9	Unmodified	_VYICIHIHI_					0	0	0		nc|ENSG00000258436|Q7Z5J4-4|RAI1	nc|ENSG00000258436|Q7Z5J4-4|RAI1	nc|ENSG00000258436|Q7Z5J4-4|RAI1	MULTI-SECPEP	OvCa9_classI_Rep2	2	556.7376098632812	2	555.810062	1109.60557	-1.0897	-0.00060566	3.5571	0.0019771	2.4674	0.0013714	555.8118134537332	143.19	0.4454	142.96	142.7	143.15	-0.22697					14	8	2	0	0	0	0.027462	1	14364	14364		29.842	4.3914	1	13473			63343	15359	52246	52296	69568	69568					0.05515270221803803
VYICIHIHI	9	Unmodified	_VYICIHIHI_					0	0	0		nc|ENSG00000258436|Q7Z5J4-4|RAI1	nc|ENSG00000258436|Q7Z5J4-4|RAI1	nc|ENSG00000258436|Q7Z5J4-4|RAI1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	555.810062	1109.60557	-3.3135	-0.0018417	6.0581	0.0033671	2.7446	0.0015255	555.8129380489837	143.73	0.74228	142.74	142.54	143.28	-0.9903	-0.11218	0.0013147	NaN	29.842	27	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18910			63344	15359	52246	52296							0.05515270221803803
VYIDFPGGILS	11	Unmodified	_VYIDFPGGILS_					0	0	0		ENSG00000221926|ENST00000649191|TRIM16;nc|ENSG00000291110|Q309B1|TRIM16L;nc|ENSG00000221926|O95361-2|TRIM16	ENSG00000221926|ENST00000649191|TRIM16	ENSG00000221926|ENST00000649191|TRIM16	MULTI-MSMS	OvCa99_classI_Rep5	1	590.8179931640625	2	590.816064	1179.61758	1.0194	0.00060226	1.2738	0.00075258	2.2932	0.0013548	590.8166485746183	154.06	1.33	154.06	153.55	154.88	0					67	26	3	0	0	0	0.10598	3	18051	18029;18051;18076		95.815	45.782	1	255230			63345	9236	52247	52297	69569;69570;69571	69570					0.0349516544602011
VYIDQTMVL	9	Unmodified	_VYIDQTMVL_					0	0	0		nc|ENSG00000114650|Q12770-3|SCAP;ENSG00000114650|ENST00000265565|SCAP;nc|ENSG00000114650|Q12770-4|SCAP;nc|ENSG00000114650|Q12770-2|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	nc|ENSG00000114650|Q12770-3|SCAP	MULTI-MSMS	OvCa99_classI_Rep5	1	541.284423828125	2	541.283543	1080.55253	1.7735	0.00095998	0.32911	0.00017814	2.1026	0.0011381	541.2835496815616	127.96	0.93504	127.96	127.72	128.65	0					37	19	3	0	0	0	0.084918	1	14820	14820		101.25	21.54	1	457900			63346	3031	52248	52298	69572	69572					0.015478476485213832
VYIDRVRSL	9	Unmodified	_VYIDRVRSL_					0	0	0		nc|ENSG00000160789|P02545-2|LMNA;nc|ENSG00000160789|P02545-6|LMNA;nc|ENSG00000160789|P02545-3|LMNA;ENSG00000160789|ENST00000368300|LMNA	nc|ENSG00000160789|P02545-2|LMNA	nc|ENSG00000160789|P02545-2|LMNA	MULTI-MSMS	OvCa99_classI_Rep5	1	560.8287963867188	2	560.827298	1119.64004	-0.017605	-9.8733E-06	-0.92194	-0.00051705	-0.93955	-0.00052692	560.826858568463	70.307	3.5219	70.307	69.513	73.035	0					204	87	3	0	0	0	0.3249	3	6715	6715;6742;6772		60.118	8.9256	1	81756000			63347	6091	52249	52299	69573;69574;69575	69573					0.08500809634278994
VYIEKNDKL	9	Unmodified	_VYIEKNDKL_					0	0	0		ENST00000549472.1_1_12:56480319-56481575:+|nuORF;ENST00000546884.1_1_12:56474084-56480451:+|nuORF;nc|ENSG00000065361|P21860-3|ERBB3;nc|ENSG00000065361|P21860-4|ERBB3;ENSG00000065361|ENST00000267101|ERBB3	ENST00000549472.1_1_12:56480319-56481575:+|nuORF	ENST00000549472.1_1_12:56480319-56481575:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	561.31689453125	2	561.313689	1120.61282	0.066595	3.7381E-05	-0.31475	-0.00017667	-0.24815	-0.00013929	561.3133380831207	51.767	1.3685	51.767	51.504	52.873	0					72	31	4	0	0	0	0.021573	1	4010	4010		145.16	29.697	1	4839100			63348	1324	52250	52300	69576	69576					0.05734281303239186
VYIFQEVKSS	10	Unmodified	_VYIFQEVKSS_					0	0	0		ENSG00000102024|ENST00000355899|PLS3;nc|ENSG00000102024|P13797-3|PLS3;nc|ENSG00000102024|P13797-2|PLS3	ENSG00000102024|ENST00000355899|PLS3	ENSG00000102024|ENST00000355899|PLS3	MULTI-MSMS	OvCa99_classI_Rep5	1	400.5500793457031	3	400.548406	1198.62339	1.3593	0.00054445	-0.12977	-5.198E-05	1.2295	0.00049247	400.5482760934654	61.007	0.85532	61.007	60.73	61.585	0					55	19	4	0	0	0	0.53807	1	5348	5348		49.536	3.5638	1	3114500			63349	2216	52251	52301	69577	69577					0.03202263957678042
VYIGQLTST	9	Unmodified	_VYIGQLTST_					0	0	0		tr|A0A7D6ZYM5|A0A7D6ZYM5_9CLOTMultidrugeffluxMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_02870PE=4SV=1	tr|A0A7D6ZYM5|A0A7D6ZYM5_9CLOTMultidrugeffluxMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_02870PE=4SV=1	tr|A0A7D6ZYM5|A0A7D6ZYM5_9CLOTMultidrugeffluxMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_02870PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	491.2665710449219	2	491.266207	980.517862	-0.21153	-0.00010392	1.3917	0.0006837	1.1802	0.00057978	491.26662199986725	33.071	0.58962	33.071	32.844	33.434	0					31	11	4	0	0	0	0.56889	1	1495	1495		35.618	5.1146	1	267120			63350	35922	52252	52302	69578	69578					0.02682347832023879
VYIGSTLSYF	10	Unmodified	_VYIGSTLSYF_					0	0	0		nc|ENSG00000089041|Q99572-5|P2RX7;nc|ENSG00000089041|Q99572-2|P2RX7;ENSG00000089041|ENST00000328963|P2RX7;nc|ENSG00000089041|Q99572-7|P2RX7;nc|ENSG00000089041|Q99572-6|P2RX7;ENST00000539606.5_1_12:121592718-121615069:+|nuORF;nc|ENSG00000089041|Q99572-4|P2RX7;nc|ENSG00000089041|Q99572-8|P2RX7;ENST00000538011.5_1_12:121592718-121622602:+|nuORF	nc|ENSG00000089041|Q99572-5|P2RX7	nc|ENSG00000089041|Q99572-5|P2RX7	MULTI-MSMS	OvCa99_classI_Rep5	1	575.2979125976562	2	575.294965	1148.57538	0.8483	0.00048802	0.84087	0.00048375	1.6892	0.00097177	575.295540972545	139.15	0.9101	139.15	138.83	139.74	0					42	18	4	0	0	0	0.41408	2	16233	16233;16258		66.429	13.078	1	219550			63351	1804	52253	52303	69579;69580	69579					0.007031900376205158
VYIHELTFL	9	Unmodified	_VYIHELTFL_					0	0	0		ENST00000284268.6_1_5:14710442-14710625:-|nuORF	ENST00000284268.6_1_5:14710442-14710625:-|nuORF	ENST00000284268.6_1_5:14710442-14710625:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	567.81103515625	2	567.813325	1133.6121	0.016962	9.6314E-06	-3.7397	-0.0021235	-3.7228	-0.0021138	567.811208678959	114.23	1.3057	113.18	112.79	114.09	-1.055					67	25	3	0	0	0	0.59983	1	8422	8422		31.955	1.4512	1	291700			63352	10066	52254	52304	69581	69581					0.05063486654148619
VYIHLETI	8	Unmodified	_VYIHLETI_					0	0	0			REV__tr|A0A7D7A2Y9|A0A7D7A2Y9_9CLOTprotein-serine/threoninephosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_10420PE=4SV=1	REV__tr|A0A7D7A2Y9|A0A7D7A2Y9_9CLOTprotein-serine/threoninephosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_10420PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	493.76953125	2	494.279118	986.543683	2.0391	0.0010079	-0.2393	-0.00011828	1.7998	0.00088959	494.2787641109538	100.29	0.95895	100.29	99.939	100.9	0					44	22	3	0	0	0	0.028476	1	11119	11119		54.765	16.953	1	1196800	+		63353	32559	52255	52305	69582	69582					0.049872420743326984
VYIHPSSALF	10	Unmodified	_VYIHPSSALF_					0	0	0		ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	ENSG00000067596|ENST00000262415|DHX8	MULTI-MSMS	OvCa99_classI_Rep5	1	567.3048095703125	2	567.303124	1132.5917	2.2092	0.0012533	0.6497	0.00036858	2.8589	0.0016218	567.303120202588	102.14	1.9943	102.14	101.73	103.73	0					104	44	5	0	0	0	0.028201	2	11363	11363;11386		138.24	44.236	1	6665200			63354	1377	52256	52306	69583;69584	69583					0.030703159943413993
VYIKHPVSL	9	Unmodified	_VYIKHPVSL_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	OvCa99_classI_Rep5	1	528.3172607421875	2	528.316035	1054.61752	-0.89797	-0.00047441	-0.69825	-0.0003689	-1.5962	-0.00084331	528.3156967686439	66.001	3.5553	66.001	65.507	69.063	0					234	88	6	0	0	0	0.0073837	8	6166	6070;6100;6136;6166;6198;6227;6275;6337		191.63	99.564	1	191920000			63355	1970	52257	52307	69585;69586;69587;69588;69589;69590;69591;69592	69588					0.09239210236660256
VYIKHPVSL	9	Unmodified	_VYIKHPVSL_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MATCH	OvCa9_classI_Rep3	3		2	528.316035	1054.61752	0.33702	0.00017806	4.0532	0.0021414	4.3902	0.0023194	528.317862638337	69.031	0.74835	66.217	65.863	66.612	-2.8144	0.10796	0.0049394	NaN	191.63	21	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16175			63356	1970	52257	52307							0.09239210236660256
VYILFQWGVL	10	Unmodified	_VYILFQWGVL_					0	0	0			REV__STK3-NIPAL2|2|fusion	REV__STK3-NIPAL2|2|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	413.2276611328125	3	413.237504	1236.69068	0.66981	0.00027679	1.2712	0.0005253	1.941	0.00080209	413.2378666744459	59.643	0.88324	56.251	55.904	56.787	-3.392					46	17	3	0	0	0	0.027147	1	4029	4029		12.812	0	1	178760	+		63357	29461	52258	52308	69593	69593					0.08180338959277833
VYINGAKRAL	10	Unmodified	_VYINGAKRAL_					0	0	0			REV__ENST00000425095.1_1_10:35986317-35986536:+|nuORF	REV__ENST00000425095.1_1_10:35986317-35986536:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	552.8274536132812	2	552.82984	1103.64513	2.7369	0.001513	3.1045	0.0017163	5.8414	0.0032293	552.8313750129789	90.248	0.52743	90.248	89.977	90.504	0					32	12	4	0	0	0	0.58282	1	9674	9674		44.117	1.7207	1	1601900	+		63358	25651	52259	52309	69594	69594					0.09745113496887825
VYINLANLI	9	Unmodified	_VYINLANLI_					0	0	0		ENSG00000139324|ENST00000266712|TMTC3;nc|ENSG00000139324|Q6ZXV5|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	ENSG00000139324|ENST00000266712|TMTC3	MULTI-MSMS	OvCa99_classI_Rep5	1	516.8092041015625	2	516.808042	1031.60153	0.1522	7.8656E-05	-0.11571	-5.9801E-05	0.036484	1.8855E-05	516.8080158374888	161.89	0.66307	161.89	161.66	162.33	0					24	12	3	0	0	0	0.36502	1	18980	18980		55.504	7.8469	1	86971			63359	4766	52260	52310	69595	69595					0.08699503999741864
VYIRGSKIRF	10	Unmodified	_VYIRGSKIRF_					0	0	0		ENSG00000100028|ENST00000215829|SNRPD3;nc|ENSG00000286070|P62318-2|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	MULTI-MSMS	OvCa99_classI_Rep5	1	413.5849609375	3	413.583785	1237.72953	1.1371	0.00047029	-1.3987	-0.00057847	-0.26157	-0.00010818	413.5832174620275	63.491	2.1306	63.491	63.1	65.231	0					137	52	5	0	0	0	0.52439	2	5723	5693;5723		68.846	28.248	1	20518000			63360	1995	52261	52311	69596;69597	69597					0.12017064313636183
VYIRGSKIRF	10	Unmodified	_VYIRGSKIRF_					0	0	0		ENSG00000100028|ENST00000215829|SNRPD3;nc|ENSG00000286070|P62318-2|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	MULTI-MSMS	OvCa99_classI_Rep5	1	619.873291015625	2	619.87204	1237.72953	0.054922	3.4045E-05	-0.1799	-0.00011151	-0.12498	-7.7469E-05	619.8718196878166	63.513	1.3647	63.513	63.179	64.544	0					87	33	5	0	0	0	0.32926	1	5702	5702		77.318	25.982	1	7429000			63361	1995	52261	52311	69598	69598					0.12017064313636183
VYISEHEHF	9	Unmodified	_VYISEHEHF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	OvCa99_classI_Rep5	1	580.77392578125	2	580.772188	1159.52982	-0.23385	-0.00013581	-0.21638	-0.00012567	-0.45023	-0.00026148	580.7721006422627	62.836	4.3558	62.836	62.621	66.977	0					264	108	6	0	0	0	0.023378	6	5632	5603;5632;5662;5699;5730;5761		143.02	56.578	1	167370000			63362	2399	52262	52312	69599;69600;69601;69602;69603;69604	69600					-0.043560354247802024
VYISLPHFL	9	Unmodified	_VYISLPHFL_					0	0	0		nc|ENSG00000135218|P16671-4|CD36;nc|ENSG00000135218|P16671-3|CD36;ENSG00000135218|ENST00000447544|CD36;ENST00000464213.1_1_7:80300260-80302160:+|nuORF	nc|ENSG00000135218|P16671-4|CD36	nc|ENSG00000135218|P16671-4|CD36	MULTI-MSMS	OvCa99_classI_Rep5	1	544.8126220703125	2	544.810585	1087.60662	2.0627	0.0011238	-0.5004	-0.00027262	1.5623	0.00085115	544.8101418155541	137.04	0.91412	137.04	136.68	137.59	0					43	18	3	0	0	0	0.19716	1	15999	15999		76.847	2.5916	1	336910			63363	4358	52263	52313	69605	69605					0.06631807862368078
VYISNGQVL	9	Unmodified	_VYISNGQVL_					0	0	0		ENST00000487571.1_1_3:53922418-53925815:-|nuORF;ENSG00000113811|ENST00000495461|SELENOK	ENST00000487571.1_1_3:53922418-53925815:-|nuORF	ENST00000487571.1_1_3:53922418-53925815:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	496.7765808105469	2	496.7742	991.533846	1.7733	0.00088092	0.82796	0.00041131	2.6012	0.0012922	496.7744139093059	98.115	0.50902	98.115	97.867	98.376	0					24	11	3	0	0	0	0.24951	1	10807	10807		68.787	10.976	1	703910			63364	2998	52264	52314	69606	69606					0.037740540689469526
VYISPDPN	8	Unmodified	_VYISPDPN_					0	0	0		tr|A0A7D7AAR3|A0A7D7AAR3_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12505PE=4SV=1	tr|A0A7D7AAR3|A0A7D7AAR3_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12505PE=4SV=1	tr|A0A7D7AAR3|A0A7D7AAR3_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_12505PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	452.7478942871094	2	452.724175	903.433798	0.073929	3.3469E-05	-3.6581	-0.0016561	-3.5842	-0.0016226	452.72207639455024	33.249	1.4601	33.249	32.844	34.304	0					65	29	4	0	0	0	0.028476	1	1600	1600		68.485	0	1	189740			63365	36207	52265	52315	69607	69607					-0.02178183264868494
VYISPHKNET	10	Unmodified	_VYISPHKNET_					0	0	0		ENSG00000103479|ENST00000262133|RBL2;nc|ENSG00000103479|Q08999-2|RBL2	ENSG00000103479|ENST00000262133|RBL2	ENSG00000103479|ENST00000262133|RBL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.9931640625	2	594.306395	1186.59824	0.048128	2.8603E-05	0.88567	0.00052636	0.9338	0.00055497	594.306563403647	69.228	0.28339	69.228	69.106	69.39	0					9	6	2	0	0	0	0.026659	1	6569	6569		45.972	0	1	129600			63366	2318	52266	52316	69608	69608					0.012402091550711702
VYISSFVRL	9	Unmodified	_VYISSFVRL_					0	0	0		tr|A0A7D6VQR5|A0A7D6VQR5_9CLOTAECfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23310PE=4SV=1	tr|A0A7D6VQR5|A0A7D6VQR5_9CLOTAECfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23310PE=4SV=1	tr|A0A7D6VQR5|A0A7D6VQR5_9CLOTAECfamilytransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23310PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	542.3126831054688	2	542.313492	1082.61243	0.51024	0.00027671	-0.71126	-0.00038572	-0.20102	-0.00010901	542.3129599668862	114.13	1.4044	113.08	112.79	114.19	-1.055					49	27	2	0	0	0	0.51865	1	8432	8432		40.778	5.1599	1	114510			63367	34866	52267	52317	69609	69609					0.07442906374035374
VYKAFVDNY	9	Unmodified	_VYKAFVDNY_					0	0	0		nc|ENSG00000159842|Q12979-4|ABR;nc|ENSG00000159842|Q12979-2|ABR;ENSG00000159842|ENST00000302538|ABR;ENST00000573325.1_1_17:986639-994967:-|nuORF;ABR-SMG6|1|fusion;ABR-SMG6|2|fusion;ABR-SMG6|3|fusion	nc|ENSG00000159842|Q12979-4|ABR	nc|ENSG00000159842|Q12979-4|ABR	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.7798461914062	2	559.779482	1117.54441	0.48751	0.0002729	-1.343	-0.00075176	-0.85544	-0.00047886	559.7785887386365	82.541	1.121	79.858	79.393	80.514	-2.683					65	22	4	0	0	0	0.017173	2	6832	6832;6844		150.36	54.171	1	481170			63368	6031	52268	52318	69610;69611	69610					-0.009659632766215509
VYKAFVDNY	9	Unmodified	_VYKAFVDNY_					0	0	0		nc|ENSG00000159842|Q12979-4|ABR;nc|ENSG00000159842|Q12979-2|ABR;ENSG00000159842|ENST00000302538|ABR;ENST00000573325.1_1_17:986639-994967:-|nuORF;ABR-SMG6|1|fusion;ABR-SMG6|2|fusion;ABR-SMG6|3|fusion	nc|ENSG00000159842|Q12979-4|ABR	nc|ENSG00000159842|Q12979-4|ABR	MULTI-MATCH	OvCa9_classI_Rep2	2		2	559.779482	1117.54441	0.88689	0.00049646	-1.2627	-0.00070683	-0.3758	-0.00021037	559.7786335992015	81.629	1.5409	79.98	79.315	80.856	-1.6485	0.092385	-0.00032214	NaN	150.36	70	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182720			63369	6031	52268	52318							-0.009659632766215509
VYKAFVDNY	9	Unmodified	_VYKAFVDNY_					0	0	0		nc|ENSG00000159842|Q12979-4|ABR;nc|ENSG00000159842|Q12979-2|ABR;ENSG00000159842|ENST00000302538|ABR;ENST00000573325.1_1_17:986639-994967:-|nuORF;ABR-SMG6|1|fusion;ABR-SMG6|2|fusion;ABR-SMG6|3|fusion	nc|ENSG00000159842|Q12979-4|ABR	nc|ENSG00000159842|Q12979-4|ABR	MULTI-MATCH	OvCa9_classI_Rep3	3		2	559.779482	1117.54441	-1.1908	-0.0006666	1.242	0.00069524	0.051151	2.8634E-05	559.7797993791488	82.121	1.1979	79.825	79.233	80.431	-2.2963	-0.062737	0.002482	NaN	150.36	73	23	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	395420			63370	6031	52268	52318							-0.009659632766215509
VYKAFVMETF	10	Unmodified	_VYKAFVMETF_					0	0	0		nc|ENSG00000105677|Q9BVK8-2|TMEM147;ENST00000477168.6_1_19:36037622-36038346:+|nuORF;ENST00000593027.6_1_19:36036533-36038346:+|nuORF;ENSG00000105677|ENST00000222284|TMEM147	nc|ENSG00000105677|Q9BVK8-2|TMEM147	nc|ENSG00000105677|Q9BVK8-2|TMEM147	MSMS	OvCa99_classI_Rep5	1	617.8140869140625	2	617.812467	1233.61038	NaN	NaN	NaN	NaN	NaN	NaN	NaN	112.28	1	112.28	111.78	112.78	0								0	0	0	0.10961	1	12778	12778		65.465	10.689	1				63371	2489	52269	52319	69612	69612					0.002921095739111479
VYKDLVLLL	9	Unmodified	_VYKDLVLLL_					0	0	0		ENSG00000179715|ENST00000546455|PCED1B;nc|ENSG00000132635|Q9H1Q7-4|PCED1A;ENSG00000132635|ENST00000360652|PCED1A;nc|ENSG00000132635|Q9H1Q7-3|PCED1A;nc|ENSG00000132635|Q9H1Q7-2|PCED1A	ENSG00000179715|ENST00000546455|PCED1B;nc|ENSG00000132635|Q9H1Q7-3|PCED1A	ENSG00000179715|ENST00000546455|PCED1B	MULTI-MSMS	OvCa99_classI_Rep5	1	538.343505859375	2	538.341718	1074.66888	0.83281	0.00044834	0.98277	0.00052907	1.8156	0.00097741	538.3421353911075	132.05	1.1776	132.05	131.72	132.89	0					56	24	4	0	0	0	0.3249	1	15330	15330		60.118	2.307	1	804070			63372	7839;15018	52270	52320	69613	69613					0.13453534210702855
VYKENLVDGF	10	Unmodified	_VYKENLVDGF_					0	0	0		ENST00000492185.5_1_6:31920080-31921650:-|nuORF;ENST00000488426.5_1_6:31920080-31922695:-|nuORF;nc|ENSG00000204356|P18615-4|NELFE;ENSG00000204356|ENST00000375429|NELFE;nc|ENSG00000204356|P18615-3|NELFE	ENST00000492185.5_1_6:31920080-31921650:-|nuORF	ENST00000492185.5_1_6:31920080-31921650:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	592.3047485351562	2	592.303321	1182.59209	2.2172	0.0013132	-0.65795	-0.00038971	1.5592	0.00092354	592.3032063607029	92.831	0.58109	92.831	92.555	93.136	0					33	13	4	0	0	0	0.0091683	1	10039	10039		160.82	64.788	1	2408100			63373	8973	52271	52321	69614	69614					0.008096909235746352
VYKKLLLYM	9	Unmodified	_VYKKLLLYM_					0	0	0			REV__tr|A0A553SIX8|A0A553SIX8_NIACIYkoSOS=NialliacirculansOX=1397GN=CEQ21_15695PE=4SV=1	REV__tr|A0A553SIX8|A0A553SIX8_NIACIYkoSOS=NialliacirculansOX=1397GN=CEQ21_15695PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.3120727539062	2	585.851396	1169.68824	0.81338	0.00047652	3.5288	0.0020673	4.3422	0.0025439	586.3543672508565	156.7	0.60138	156.7	156.4	157	0					15	11	2	0	0	0	0.027462	1	18340	18340		42.474	3.6683	1	28488	+		63374	29943	52272	52322	69615	69615					0.11018167229963183
VYKKYPNVF	9	Unmodified	_VYKKYPNVF_					0	0	0		nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	MULTI-MSMS	OvCa99_classI_Rep5	1	579.3232421875	2	579.321317	1156.62808	-1.0714	-0.00062069	0.47248	0.00027372	-0.59892	-0.00034697	579.3214304319345	65.523	0.94925	65.523	65.034	65.984	0					56	23	4	0	0	0	0.048552	1	6018	6018		119.56	47.679	1	3384600			63375	6935	52273	52323	69616	69616					0.056031928910670104
VYKPAQNSW	9	Unmodified	_VYKPAQNSW_					0	0	0		ENSG00000120696|ENST00000379483|KBTBD7;ENSG00000165572|ENST00000379485|KBTBD6	ENSG00000120696|ENST00000379483|KBTBD7	ENSG00000120696|ENST00000379483|KBTBD7	MULTI-MSMS	OvCa99_classI_Rep5	1	546.7787475585938	2	546.777274	1091.53999	-0.31458	-0.00017201	-0.17188	-9.3982E-05	-0.48647	-0.00026599	546.776983185253	62.023	1.0764	62.023	61.585	62.661	0					79	25	5	0	0	0	0.010652	1	5494	5494		166.68	78.924	1	7221800			63376	3443	52274	52324	69617	69617					-0.002114276995371256
VYKRWKLK	8	Unmodified	_VYKRWKLK_					0	0	0		ENST00000549913.6_1_12:113306162-113306792:+|nuORF	ENST00000549913.6_1_12:113306162-113306792:+|nuORF	ENST00000549913.6_1_12:113306162-113306792:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.7848510742188	2	560.853119	1119.69168	2.9053	0.0016294	-0.63607	-0.00035674	2.2692	0.0012727	560.8527996155416	84.211	0.16868	84.211	84.093	84.261	0					5	3	2	0	0	0	0.028476	1	8778	8778		12.959	0	1	87283			63377	13578	52275	52325	69618	69618					0.13662598118821734
VYKTIMEQF	9	Unmodified	_VYKTIMEQF_					0	0	0		ENST00000575989.5_1_17:79009009-79027584:+|nuORF;ENST00000570913.5_1_17:79009009-79050117:+|nuORF;nc|ENSG00000175866|Q9UQB8-3|BAIAP2;nc|ENSG00000175866|Q9UQB8-5|BAIAP2;nc|ENSG00000175866|Q9UQB8-4|BAIAP2;nc|ENSG00000175866|Q9UQB8-6|BAIAP2;BAIAP2-RPTOR|2|fusion;ENSG00000175866|ENST00000428708|BAIAP2;nc|ENSG00000175866|Q9UQB8|BAIAP2;BAIAP2-RPTOR|1|fusion	ENST00000575989.5_1_17:79009009-79027584:+|nuORF	ENST00000575989.5_1_17:79009009-79027584:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	579.7982788085938	2	579.796817	1157.57908	1.8883	0.0010948	0.067125	3.8919E-05	1.9554	0.0011338	579.7968209430752	95.787	2.0275	95.787	95.495	97.522	0					122	47	4	0	0	0	7.227E-07	4	10474	10450;10474;10499;10538		258.83	113.67	1	26517000			63378	143	52276	52326	69619;69620;69621;69622	69620					0.006595365398197828
VYKVPPFTF	9	Unmodified	_VYKVPPFTF_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	OvCa99_classI_Rep5	1	549.3069458007812	2	549.305136	1096.59572	1.5925	0.00087479	0.56855	0.00031231	2.1611	0.0011871	549.3052750868056	118	3.0971	118	117.13	120.23	0					200	68	4	0	0	0	0.045281	1	13627	13627		122.18	50.88	1	1464100			63379	7686	52277	52327	69623	69623					0.05128405488062526
VYKVPPFTF	9	Unmodified	_VYKVPPFTF_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	OvCa9_classI_Rep2	2	549.3043823242188	2	549.305136	1096.59572	-0.87906	-0.00048287	0.77007	0.000423	-0.10899	-5.9869E-05	549.3053985969196	117.6	3.268	117.48	116.17	119.44	-0.12869					166	65	4	0	0	0	0.019133	25	11255	11197;11203;11208;11212;11219;11226;11231;11239;11245;11249;11255;11260;11267;11273;11280;11287;11299;11305;11310;11316;11323;11329;11339;11346;11352		148.04	68.592	1	153410			63380	7686	52277	52327	69624;69625;69626;69627;69628;69629;69630;69631;69632;69633;69634;69635;69636;69637;69638;69639;69640;69641;69642;69643;69644;69645;69646;69647;69648	69634					0.05128405488062526
VYKVPPFTF	9	Unmodified	_VYKVPPFTF_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	OvCa9_classI_Rep3	3	549.3054809570312	2	549.305136	1096.59572	-0.55322	-0.00030389	0.35733	0.00019628	-0.19589	-0.00010761	549.3051424140556	118.3	3.4595	117.27	116.19	119.65	-1.0324					160	69	3	0	0	0	0.019133	19	8905	8882;8894;8905;8910;8918;8923;8929;8935;8953;8957;8963;8969;8975;8982;8988;8994;9000;9007;9020		148.04	71.269	1	220590			63381	7686	52277	52327	69649;69650;69651;69652;69653;69654;69655;69656;69657;69658;69659;69660;69661;69662;69663;69664;69665;69666;69667	69651					0.05128405488062526
VYKVPPFTF	9	Unmodified	_VYKVPPFTF_					0	0	0		ENSG00000177469|ENST00000357037|CAVIN1;nc|ENSG00000177469|Q6NZI2-2|CAVIN1;nc|ENSG00000177469|Q6NZI2-3|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	ENSG00000177469|ENST00000357037|CAVIN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.3046264648438	2	549.305136	1096.59572	-1.4005	-0.0007693	1.3323	0.00073184	-0.068195	-3.746E-05	549.3057153974293	118.66	3.3453	117.32	116.1	119.45	-1.3444					163	63	3	0	0	0	0.019133	14	11139	11058;11068;11080;11092;11104;11116;11128;11139;11151;11162;11175;11187;11208;11226		148.04	84.737	1	218870			63382	7686	52277	52327	69668;69669;69670;69671;69672;69673;69674;69675;69676;69677;69678;69679;69680;69681	69675					0.05128405488062526
VYKVVGNLL	9	Unmodified	_VYKVVGNLL_					0	0	0		ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	ENSG00000183856|ENST00000361170|IQGAP3	MULTI-MSMS	OvCa99_classI_Rep5	1	502.8139953613281	2	502.810585	1003.60662	2.7231	0.0013692	-0.097896	-4.9223E-05	2.6252	0.00132	502.8103668113039	98.982	0.93175	98.982	98.638	99.57	0					61	22	4	0	0	0	0.12365	1	10914	10914		90.777	16.522	1	8768200			63383	8118	52278	52328	69682	69682					0.10495807862389483
VYLAARDP	8	Unmodified	_VYLAARDP_					0	0	0			REV__nc|ENSG00000111218|Q9NR22-2|PRMT8	REV__nc|ENSG00000111218|Q9NR22-2|PRMT8	MULTI-MSMS	OvCa99_classI_Rep5	1	452.7478942871094	2	452.747985	903.481417	-0.3965	-0.00017951	0.37387	0.00016927	-0.022627	-1.0244E-05	452.7480641355397	33.897	0.99804	33.897	33.681	34.679	0					48	20	5	0	0	0	0.45246	1	1600	1600		82.305	8.3303	1	1611300	+		63384	18021	52279	52329	69683	69683					0.025815157259899024
VYLAHPRAVNG	11	Unmodified	_VYLAHPRAVNG_					0	0	0		nc|ENSG00000172869|Q9Y485|DMXL1;ENSG00000172869|ENST00000539542|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	598.3163452148438	2	598.830372	1195.64619	0.49083	0.00029392	3.8537	0.0023077	4.3445	0.0026016	598.8326450913469	109.55	0.15833	107.83	107.73	107.89	-1.7256					4	2	2	0	0	0	0.025746	1	10052	10052		40.778	6.6056	1	10480			63385	7324	52280	52330	69684	69684					0.05619327865792911
VYLASHNLI	9	Unmodified	_VYLASHNLI_					0	0	0			REV__ENST00000555937.1_1_14:62200939-62200990:+|nuORF	REV__ENST00000555937.1_1_14:62200939-62200990:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	515.294189453125	2	515.290017	1028.56548	-0.70917	-0.00036543	3.3778	0.0017406	2.6686	0.0013751	515.2916595586944	61.722	1.4211	61.722	61.2	62.621	0					87	33	5	0	0	0	0.24951	1	5482	5482		68.787	2.9837	1	14549000	+		63386	27551	52281	52331	69685	69685					0.05234046822897653
VYLAWILFF	9	Unmodified	_VYLAWILFF_					0	0	0		ENST00000394971.7_1_16:31102457-31105584:-|nuORF;ENSG00000167397|ENST00000394975|VKORC1	ENST00000394971.7_1_16:31102457-31105584:-|nuORF	ENST00000394971.7_1_16:31102457-31105584:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	586.322998046875	2	586.331153	1170.64775	1.6264	0.00095359	-3.6813	-0.0021585	-2.0549	-0.0012049	586.3287235513881	129.37	0.65242	129.37	129.12	129.77	0					32	13	3	0	0	0	0.42921	1	15001	15001		49.211	3.2385	1	163670			63387	6788	52282	52332	69686	69686					0.06925568901851875
VYLDKFIRL	9	Unmodified	_VYLDKFIRL_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L;GNL3L|p.G499Vfs*4|1|0.04|ENSG00000130119|chrX:54558484-54558485|-/T|frameshift_variant;ENST00000462279.5_1_5:60188520-60189039:-|nuORF	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MULTI-MSMS	OvCa99_classI_Rep5	1	583.8515014648438	2	583.850242	1165.68593	1.0844	0.00063311	0.80109	0.00046772	1.8855	0.0011008	583.8506820364943	109.77	1.7397	109.77	109.46	111.2	0					94	38	4	0	0	0	0.018335	3	12426	12426;12448;12474		148.99	61.232	1	6618600			63388	3956	52283	52333	69687;69688;69689	69687					0.1097145481651296
VYLETLITI	9	Unmodified	_VYLETLITI_					0	0	0			REV__ENSG00000197826|ENST00000358105|CFAP299	REV__ENSG00000197826|ENST00000358105|CFAP299	MULTI-MSMS	OvCa99_classI_Rep5	1	532.8180541992188	2	532.815533	1063.61651	1.3107	0.00069836	1.1099	0.00059139	2.4206	0.0012897	532.8158519193153	146.44	1.1298	146.44	146.18	147.31	0					31	18	3	0	0	0	0.19716	1	17121	17121		76.847	8.3619	1	171270	+		63389	22954	52284	52334	69690	69690					0.0872495107710165
VYLGHVIYL	9	Unmodified	_VYLGHVIYL_					0	0	0		ENSG00000187513|ENST00000342280|GJA4	ENSG00000187513|ENST00000342280|GJA4	ENSG00000187513|ENST00000342280|GJA4	MULTI-MSMS	OvCa99_classI_Rep5	1	538.811767578125	2	538.810585	1075.60662	2.2429	0.0012085	0.013684	7.3729E-06	2.2565	0.0012159	538.8105032071121	115.59	0.70416	115.59	115.3	116	0					27	13	3	0	0	0	0.32242	1	13216	13216		60.404	10.379	1	305810			63390	8406	52285	52335	69691	69691					0.07183807862361391
VYLGLPIFRF	10	Unmodified	_VYLGLPIFRF_					0	0	0		ENSG00000105248|ENST00000262962|YJU2	ENSG00000105248|ENST00000262962|YJU2	ENSG00000105248|ENST00000262962|YJU2	MULTI-MSMS	OvCa99_classI_Rep5	1	612.8616943359375	2	612.860609	1223.70667	1.0257	0.00062858	0.63123	0.00038686	1.6569	0.0010154	612.8613633536589	157.51	1.0286	157.51	157.2	158.23	0					51	20	3	0	0	0	0.50656	1	18463	18463		53.351	18.199	1	179100			63391	2433	52286	52336	69692	69692					0.10376045196153427
VYLHNNQLSN	10	Unmodified	_VYLHNNQLSN_					0	0	0		nc|ENSG00000132000|Q6PEZ8-3|PODNL1;nc|ENSG00000132000|Q6PEZ8|PODNL1;ENSG00000132000|ENST00000588872|PODNL1	nc|ENSG00000132000|Q6PEZ8-3|PODNL1	nc|ENSG00000132000|Q6PEZ8-3|PODNL1	MULTI-MSMS	OvCa99_classI_Rep5	1	601.3045654296875	2	601.301644	1200.58874	1.4821	0.00089119	0.24833	0.00014932	1.7304	0.0010405	601.30219782033	149.77	2.5731	149.77	149.4	151.97	0					182	51	8	0	0	0	0.22395	2	17533	17511;17533		90.777	14.003	1	11852000			63392	4104	52287	52337	69693;69694	69694					-0.0035355913041712483
VYLKILSHE	9	Unmodified	_VYLKILSHE_					0	0	0			REV__nc|ENSG00000134769|Q9Y4J8-10|DTNA	REV__nc|ENSG00000134769|Q9Y4J8-10|DTNA	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.7474365234375	2	551.318774	1100.623	1.3879	0.00076517	1.1761	0.00064839	2.564	0.0014136	551.3192244303867	138.33	0.53064	138.33	138.06	138.59	0					17	10	2	0	0	0	0.027448	1	16146	16146		53.351	12.779	1	59506	+		63393	19232	52288	52338	69695	69695					0.07670889028440797
VYLLIMPPI	9	Unmodified	_VYLLIMPPI_					0	0	0			REV__tr|A0A553SI27|A0A553SI27_NIACIThiolreductantABCexportersubunitCydDOS=NialliacirculansOX=1397GN=cydDPE=4SV=1	REV__tr|A0A553SI27|A0A553SI27_NIACIThiolreductantABCexportersubunitCydDOS=NialliacirculansOX=1397GN=cydDPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.2518920898438	2	529.819564	1057.62458	-0.34925	-0.00018504	-0.40935	-0.00021688	-0.7586	-0.00040192	529.81932495474	29.76	0.60033	29.76	29.536	30.136	0					18	11	2	0	0	0	0.027462	1	1124	1124		14.664	4.3988	1	150930	+		63394	29859	52289	52339	69696	69696					0.0980680679285797
VYLLVRKTG	9	Unmodified	_VYLLVRKTG_					0	0	0			REV__nc|ENSG00000083307|Q6ISB3-2|GRHL2	REV__nc|ENSG00000083307|Q6ISB3-2|GRHL2	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.8256225585938	2	524.829309	1047.64407	-5.767	-0.0030267	1.6173	0.0008488	-4.1497	-0.0021779	524.8300427930473	156.94	1.6972	155.39	155.01	156.7	-1.545					136	47	6	0	0	0	0.70177	1	15594	15594		17.365	0	1	1010500	+		63395	17100	52290	52340	69697	69697					0.12214899127980061
VYLNRIDKI	9	Unmodified	_VYLNRIDKI_					0	0	0			REV__ENST00000478361.6_1_10:94240585-94297282:-|nuORF	REV__ENST00000478361.6_1_10:94240585-94297282:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	567.33984375	2	567.337498	1132.66044	1.9384	0.0010997	2.8469	0.0016152	4.7853	0.0027149	567.3389831708672	129.35	2.3163	129.35	129.02	131.34	0					116	48	5	0	0	0	0.12515	1	15010	15010		90.37	7.6193	1	2653000	+		63396	18472	52291	52341	69698	69698					0.09941980294070163
VYLPDVWTI	9	Unmodified	_VYLPDVWTI_					0	0	0		nc|ENSG00000158941|Q8N163-2|CCAR2;ENSG00000158941|ENST00000308511|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	MULTI-MSMS	OvCa99_classI_Rep5	1	553.3004760742188	2	553.30005	1104.58555	0.50069	0.00027703	-1.2133	-0.00067131	-0.71258	-0.00039427	553.29912890614	161.08	2.1208	161.08	160.31	162.43	0					68	41	3	0	0	0	0.19716	1	18895	18895		76.847	10.417	1	194190			63397	5980	52292	52342	69699	69699					0.037437977628542285
VYLPENNAR	9	Unmodified	_VYLPENNAR_					0	0	0		ENSG00000261934|ENST00000573521|PCDHGA9;nc|ENSG00000261934|Q9Y5G4-2|PCDHGA9;PCDHGA9|p.Y586Sfs*3|1|0.04|ENSG00000261934|chr5:141404709-141404709|A/-|frameshift_variant	ENSG00000261934|ENST00000573521|PCDHGA9	ENSG00000261934|ENST00000573521|PCDHGA9	MULTI-MSMS	OvCa99_classI_Rep5	1	538.2835693359375	2	538.28018	1074.54581	2.6037	0.0014015	3.2769	0.0017639	5.8806	0.0031654	538.2816321513895	96.089	0.96729	96.089	95.785	96.753	0					68	22	4	0	0	0	0.18193	1	10523	10523		79.451	10.664	1	4066700			63398	9505	52293	52343	69700	69700					0.011516708121462216
VYLPGSRQTL	10	Unmodified	_VYLPGSRQTL_					0	0	0		nc|ENSG00000178209|Q15149-7|PLEC;nc|ENSG00000178209|Q15149-8|PLEC;nc|ENSG00000178209|Q15149-9|PLEC;nc|ENSG00000178209|Q15149-5|PLEC;ENSG00000178209|ENST00000345136|PLEC;nc|ENSG00000178209|Q15149-6|PLEC;nc|ENSG00000178209|Q15149-3|PLEC;nc|ENSG00000178209|Q15149-2|PLEC;nc|ENSG00000178209|Q15149|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	nc|ENSG00000178209|Q15149-7|PLEC	MULTI-MSMS	OvCa99_classI_Rep5	1	567.3192749023438	2	567.319306	1132.62406	2.1896	0.0012422	-0.12369	-7.0169E-05	2.0659	0.001172	567.3192506256812	80.682	0.71875	80.682	80.443	81.162	0					39	16	4	0	0	0	0.20536	1	8276	8276		93.598	10.847	1	2856700			63399	7740	52294	52344	69701	69701					0.06305103397380662
VYLPLSRGDI	10	Unmodified	_VYLPLSRGDI_					0	0	0		tr|A0A7D6ZZ39|A0A7D6ZZ39_9CLOTCobalaminbiosynthesisproteinCobDOS=ClostridiumintestinaleOX=36845GN=cobDPE=3SV=1	tr|A0A7D6ZZ39|A0A7D6ZZ39_9CLOTCobalaminbiosynthesisproteinCobDOS=ClostridiumintestinaleOX=36845GN=cobDPE=3SV=1	tr|A0A7D6ZZ39|A0A7D6ZZ39_9CLOTCobalaminbiosynthesisproteinCobDOS=ClostridiumintestinaleOX=36845GN=cobDPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	566.8062744140625	2	566.821681	1131.62881	0.47487	0.00026917	-3.4069	-0.0019311	-2.932	-0.0016619	566.8202314372832	103.31	0.67625	101.11	100.73	101.4	-2.1994					15	12	2	0	0	0	0.026635	1	9336	9336		39.253	1.4413	1	21614			63400	35943	52295	52345	69702	69702					0.06825987540150891
VYLPNINKI	9	Unmodified	_VYLPNINKI_					0	0	0		ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	ENSG00000072422|ENST00000337910|RHOBTB1	MULTI-MSMS	OvCa99_classI_Rep5	1	537.3233032226562	2	537.321317	1072.62808	1.9586	0.0010524	-0.55507	-0.00029825	1.4035	0.00075416	537.3210321104771	102.87	2.6649	102.87	102.38	105.04	0					180	62	6	0	0	0	0.0075498	4	11464	11464;11494;11525;11556		193.98	74.421	1	79273000			63401	1473	52296	52346	69703;69704;69705;69706	69703					0.09467192891088416
VYLPTHTSL	9	Unmodified	_VYLPTHTSL_					0	0	0		ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	ENSG00000007944|ENST00000356840|MYLIP	MULTI-MSMS	OvCa99_classI_Rep5	1	515.7819213867188	2	515.782025	1029.5495	2.1054	0.0010859	0.044292	2.2845E-05	2.1497	0.0011088	515.781960436738	86.094	1.2658	86.094	85.83	87.096	0					64	30	3	0	0	0	0.11171	2	9083	9053;9083		94.006	22.629	1	15279000			63402	908	52297	52347	69707;69708	69708					0.035903405860153725
VYLQNWSHVL	10	Unmodified	_VYLQNWSHVL_					0	0	0		ENSG00000169727|ENST00000578552|GPS1;nc|ENSG00000169727|Q13098|GPS1;nc|ENSG00000169727|Q13098-7|GPS1;nc|ENSG00000169727|Q13098-6|GPS1;ENST00000392357.1_1_17:80012338-80013241:+|nuORF	ENSG00000169727|ENST00000578552|GPS1;ENST00000392357.1_1_17:80012338-80013241:+|nuORF	ENSG00000169727|ENST00000578552|GPS1	MSMS	OvCa99_classI_Rep5	1	629.8346557617188	2	629.83258	1257.65061	NaN	NaN	NaN	NaN	NaN	NaN	NaN	115.29	1	115.29	114.79	115.79	0								0	0	0	0.065811	1	13171	13171		104.06	45.827	1				63403	7035;11218	52298	52348	69709	69709					0.03208792288683071
VYLRVAAVQ	9	Unmodified	_VYLRVAAVQ_					0	0	0			REV__UBXN1|p.L236V|1|0.05|ENSG00000162191|chr11:62676951-62676951|G/C|missense_variant	REV__UBXN1|p.L236V|1|0.05|ENSG00000162191|chr11:62676951-62676951|G/C|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	509.803466796875	2	509.805834	1017.59712	-0.41042	-0.00020923	-3.6368	-0.0018541	-4.0473	-0.0020633	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.6653	1	13380	13380		24.203	0	1	150140	+		63404	32746	52299	52349	69710	69710					0.08902039576832976
VYLSLLSLLL	10	Unmodified	_VYLSLLSLLL_					0	0	0		ENSG00000100170|ENST00000266088|SLC5A1;nc|ENSG00000100170|P13866-2|SLC5A1	ENSG00000100170|ENST00000266088|SLC5A1	ENSG00000100170|ENST00000266088|SLC5A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.826171875	2	567.36265	1132.71075	0.12811	7.2685E-05	1.5913	0.00090285	1.7194	0.00097553	567.3633321707669	71.107	0.70767	71.107	70.641	71.349	0					33	17	3	0	0	0	0.027021	1	6832	6832		37.159	0	1	349370			63405	2021	52300	52350	69711	69711					0.14970089899247796
VYLVAMLVL	9	Unmodified	_VYLVAMLVL_					0	0	0			REV__ENSG00000258839|ENST00000555147|MC1R	REV__ENSG00000258839|ENST00000555147|MC1R	MULTI-MSMS	OvCa9_classI_Rep2	2	510.8133239746094	2	510.811739	1019.60893	1.0663	0.00054468	2.2821	0.0011657	3.3484	0.0017104	510.8128294751169	128.19	1.0362	127.96	127.49	128.53	-0.22697					40	20	3	0	0	0	0.53728	1	12556	12556		39.021	3.8208	1	158260	+		63406	23552	52301	52351	69712	69712					0.09990520275800918
VYLVCNYAP	9	Unmodified	_VYLVCNYAP_					0	0	0		ENSG00000137558|ENST00000260113|PI15	ENSG00000137558|ENST00000260113|PI15	ENSG00000137558|ENST00000260113|PI15	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2781372070312	2	521.257328	1040.5001	0.704	0.00036696	2.306	0.001202	3.01	0.001569	521.2602406712044	145.89	0.64932	145.89	145.58	146.23	0					22	12	3	0	0	0	0.027462	1	17050	17050		31.955	8.9124	1	23414			63407	4596	52302	52352	69713	69713					-0.018526906944543953
VYLVDRTTL	9	Unmodified	_VYLVDRTTL_					0	0	0			REV__ENSG00000109927|ENST00000392793|TECTA	REV__ENSG00000109927|ENST00000392793|TECTA	MULTI-MSMS	OvCa99_classI_Rep5	1	540.3082885742188	2	540.308406	1078.60226	1.3861	0.00074891	2.3325	0.0012603	3.7186	0.0020092	540.3095555383816	119.31	1.271	119.31	118.96	120.23	0					57	29	2	0	0	0	0.36502	1	13666	13666		55.504	4.1688	1	798440	+		63408	17959	52303	52353	69714	69714					0.06610298648797652
VYLVPNFCCH	10	Unmodified	_VYLVPNFCCH_					0	0	0			REV__XCR1|p.H300Rfs*28|1|0.14|ENSG00000173578|chr3:46021048-46021049|AT/-|frameshift_variant	REV__XCR1|p.H300Rfs*28|1|0.14|ENSG00000173578|chr3:46021048-46021049|AT/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	598.3155517578125	2	597.775362	1193.53617	1.6012	0.00095713	-0.36918	-0.00022069	1.232	0.00073644	597.7757309146018	110.43	0.31559	109.28	109.08	109.4	-1.1444					6	5	2	0	0	0	0.026915	1	7973	7973		35.618	0	1	6848.1	+		63409	21786	52304	52354	69715	69715					-0.05285556789249313
VYMDWYEKF	9	Unmodified	_VYMDWYEKF_					0	0	0		SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant;ENSG00000144028|ENST00000323853|SNRNP200;ENST00000497539.5_1_2:96940752-96950410:-|nuORF;ENST00000480242.1_1_2:96950056-96950410:-|nuORF	SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	640.7874145507812	2	640.78645	1279.55835	2.094	0.0013418	0.45388	0.00029084	2.5479	0.0016327	640.7866245933342	120.07	0.73039	120.07	119.83	120.56	0					47	17	4	0	0	0	0.1243	2	13780	13780;13804		90.601	30.483	1	4351700			63410	5119	52305	52355	69716;69717	69716					-0.0702505383985681
VYMELSQKL	9	Unmodified	_VYMELSQKL_					0	0	0		ENSG00000139926|ENST00000344768|FRMD6;nc|ENSG00000139926|Q96NE9-2|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	ENSG00000139926|ENST00000344768|FRMD6	MULTI-MSMS	OvCa99_classI_Rep5	1	555.79833984375	2	555.796817	1109.57908	2.0981	0.0011661	0.10163	5.6485E-05	2.1997	0.0012226	555.7966191791318	91.368	1.0215	91.368	90.899	91.92	0					65	24	4	0	0	0	0.066102	2	9830	9830;9859		109.48	36.599	1	5574100			63411	4811	52306	52356	69718;69719	69718					0.028675365398157737
VYMFLDSAP	9	Unmodified	_VYMFLDSAP_					0	0	0		chr11:309393-319744|329|310.5|0.67|8.85|+|0|IFITM2,None|1	chr11:309393-319744|329|310.5|0.67|8.85|+|0|IFITM2,None|1	chr11:309393-319744|329|310.5|0.67|8.85|+|0|IFITM2,None|1	MULTI-SECPEP	OvCa9_classI_Rep3	3	522.3020629882812	2	521.749336	1041.48412	1.1202	0.00058448	-4.4269	-0.0023098	-3.3067	-0.0017253	521.746950222578	127.26	0.88581	126.19	125.86	126.75	-1.0715					35	16	4	0	0	0	0.027462	1	10027	10027		20.482	4.84	1	80629			63412	291	52307	52357	69720	69720					-0.034963969313594134
VYMFLDSAP	9	Unmodified	_VYMFLDSAP_					0	0	0		chr11:309393-319744|329|310.5|0.67|8.85|+|0|IFITM2,None|1	chr11:309393-319744|329|310.5|0.67|8.85|+|0|IFITM2,None|1	chr11:309393-319744|329|310.5|0.67|8.85|+|0|IFITM2,None|1	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	521.749336	1041.48412	1.0627	0.00055446	-4.4821	-0.0023385	-3.4194	-0.0017841	521.7468417167843	126.33	0.83704	126.09	125.85	126.69	-0.2359	-0.054616	-0.00076801	NaN	20.482	42	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	183870			63413	291	52307	52357							-0.034963969313594134
VYMIEPSRQK	10	Unmodified	_VYMIEPSRQK_					0	0	0			REV__nc|ENSG00000170190|O15375-2|SLC16A5	REV__nc|ENSG00000170190|O15375-2|SLC16A5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	417.8759460449219	3	417.556907	1249.64889	-2.1218	-0.00088599	-4.4377	-0.001853	-6.5596	-0.002739	417.5549031647262	49.785	2.0063	46.643	46.2	48.206	-3.1416					62	38	3	0	0	0	0.027089	1	2999	2999		25.126	0.6068	1	36387	+		63414	28999	52308	52358	69721	69721					0.03405415208430895
VYMIEPSRQK	10	Unmodified	_VYMIEPSRQK_					0	0	0			REV__nc|ENSG00000170190|O15375-2|SLC16A5	REV__nc|ENSG00000170190|O15375-2|SLC16A5	MULTI-MATCH	OvCa9_classI_Rep2	2		3	417.556907	1249.64889	-0.47046	-0.00019644	-4.6434	-0.0019389	-5.1139	-0.0021353	417.5549582242657	49.437	0.94042	46.677	46.325	47.266	-2.7603	0.016855	-0.00018459	NaN	25.126	28	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10412	+		63415	28999	52308	52358							0.03405415208430895
VYMIRVYLL	9	Unmodified	_VYMIRVYLL_					0	0	0		ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	ENSG00000157916|ENST00000605895|RER1	MULTI-MSMS	OvCa99_classI_Rep5	1	585.8308715820312	2	585.341195	1168.66784	1.6704	0.00097777	0.6622	0.00038761	2.3326	0.0013654	585.8428267808512	134.47	0.58041	134.47	134.2	134.78	0					16	12	2	0	0	0	0.21395	1	15648	15648		73.975	0	1	237610			63416	5919	52309	52359	69722	69722					0.09024996570155963
VYMKFRQLQ	9	Unmodified	_VYMKFRQLQ_					0	0	0			REV__ENST00000282999.7_1_5:112200154-112203077:+|nuORF	REV__ENST00000282999.7_1_5:112200154-112203077:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.21759033203125	3	404.890109	1211.6485	1.3948	0.00056474	1.7145	0.0006942	3.1093	0.0012589	404.8907394101404	46.522	0.39161	46.522	46.284	46.676	0					23	8	3	0	0	0	0.027462	1	3311	3311		23.523	16.504	1	931920	+		63417	24122	52310	52360	69723	69723					0.05114040279249821
VYMNRVKEI	9	Unmodified	_VYMNRVKEI_					0	0	0		ENSG00000197223|ENST00000410067|C1D;ENST00000455013.2_1_10:81784495-81784867:-|nuORF	ENSG00000197223|ENST00000410067|C1D	ENSG00000197223|ENST00000410067|C1D	MULTI-MSMS	OvCa99_classI_Rep5	1	576.3165893554688	2	576.315709	1150.61686	-0.16021	-9.233E-05	-0.065825	-3.7936E-05	-0.22603	-0.00013027	576.3153895735845	57.227	1.1081	57.227	56.875	57.984	0					65	19	4	0	0	0	0.022645	1	4793	4793		143.89	72.591	1	2991100			63418	8690	52311	52361	69724	69724					0.04758047525319853
VYNALILKN	9	Unmodified	_VYNALILKN_					0	0	0			REV__tr|A0A553SQT1|A0A553SQT1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07240PE=4SV=1	REV__tr|A0A553SQT1|A0A553SQT1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07240PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	523.8181762695312	2	524.313492	1046.61243	1.1046	0.00057914	-1.057	-0.0005542	0.047576	2.4945E-05	524.3126984959089	124.01	2.7467	122.98	122.36	125.11	-1.0377					96	52	3	0	0	0	0.027448	1	9535	9535		53.351	14.099	1	83903	+		63419	30659	52312	52362	69725	69725					0.09098906374038052
VYNENLVHM	9	Unmodified	_VYNENLVHM_					0	0	0		ENSG00000116752|ENST00000369541|BCAS2;ENST00000425064.1_1_1:100858662-100858893:-|nuORF	ENSG00000116752|ENST00000369541|BCAS2	ENSG00000116752|ENST00000369541|BCAS2	MSMS	OvCa99_classI_Rep5	1	559.7715454101562	2	559.768591	1117.52263	NaN	NaN	NaN	NaN	NaN	NaN	NaN	82.396	1	82.396	81.896	82.896	0								0	0	0	0.0070379	1	8532	8532		143.89	90.95	1				63420	3206	52313	52363	69726	69726					-0.031430912968289704
VYNENLVHMI	10	Unmodified	_VYNENLVHMI_					0	0	0		ENSG00000116752|ENST00000369541|BCAS2;ENST00000425064.1_1_1:100858662-100858893:-|nuORF	ENSG00000116752|ENST00000369541|BCAS2	ENSG00000116752|ENST00000369541|BCAS2	MULTI-MSMS	OvCa99_classI_Rep5	1	616.3133544921875	2	616.310623	1230.60669	2.1389	0.0013182	0.71217	0.00043892	2.8511	0.0017571	616.3107841511486	102.82	1.6457	102.82	102.5	104.15	0					111	38	5	0	0	0	0.039859	2	11482	11458;11482		132.76	52.303	1	13274000			63421	3206	52314	52364	69727;69728	69728					0.0006143980008346261
VYNIHLAVNF	10	Unmodified	_VYNIHLAVNF_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000478340.2_1_6:35437033-35438524:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENSG00000198755|ENST00000322203|RPL10A;ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	OvCa99_classI_Rep5	1	595.3239135742188	2	595.321848	1188.62914	1.5099	0.00089888	0.1797	0.00010698	1.6896	0.0010059	595.3219013323954	119.13	0.69277	119.13	118.86	119.56	0					42	15	4	0	0	0	0.43433	2	13662	13662;13687		63.534	17.077	1	1524400			63422	8867;12397	52315	52365	69729;69730	69729					0.04237407260006876
VYNKVHITL	9	Unmodified	_VYNKVHITL_					0	0	0		ENSG00000166228|ENST00000299299|PCBD1;ENST00000493228.1_1_10:72643709-72647885:-|nuORF	ENSG00000166228|ENST00000299299|PCBD1	ENSG00000166228|ENST00000299299|PCBD1	MULTI-MSMS	OvCa99_classI_Rep5	1	543.8192138671875	2	543.818941	1085.62333	0.045536	2.4764E-05	-1.3097	-0.00071223	-1.2641	-0.00068746	543.8180295373327	71.702	1.1837	71.702	71.308	72.492	0					60	28	4	0	0	0	0.064985	1	6942	6942		110.12	41.333	1	4514200			63423	6656	52316	52366	69731	69731					0.08394308748324875
VYNMYMHLI	9	Unmodified	_VYNMYMHLI_					0	0	0		ENSG00000021776|ENST00000156471|AQR;ENST00000543879.6_1_15:35148995-35166226:-|nuORF	ENSG00000021776|ENST00000156471|AQR	ENSG00000021776|ENST00000156471|AQR	MULTI-MSMS	OvCa99_classI_Rep5	1	592.286376953125	2	592.285563	1182.55657	1.7878	0.0010589	0.51233	0.00030345	2.3001	0.0013623	592.2858803466651	116.77	0.90291	116.77	116.37	117.27	0					39	19	3	0	0	0	0.037679	1	13359	13359		128.82	63.013	1	466220			63424	1029	52317	52367	69732	69732					-0.027403861294487797
VYNNNSSRF	9	Unmodified	_VYNNNSSRF_					0	0	0		ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	OvCa99_classI_Rep5	1	550.759521484375	2	550.759612	1099.50467	0.030718	1.6918E-05	-0.17794	-9.8004E-05	-0.14722	-8.1085E-05	550.7594363287329	45.221	0.73533	45.221	44.932	45.667	0					33	16	4	0	0	0	0.094791	1	3107	3107		98.582	18.643	1	1509700			63425	5231	52318	52368	69733	69733					-0.04110090227322871
VYNPMPFEL	9	Unmodified	_VYNPMPFEL_					0	0	0		EIF2C2-TRAPPC9|4|fusion;ENST00000521667.5_1_8:140743306-141301208:-|nuORF;EIF2C2-TRAPPC9|2|fusion;EIF2C2-TRAPPC9|1|fusion;nc|ENSG00000167632|Q96Q05-3|TRAPPC9;ENSG00000167632|ENST00000438773|TRAPPC9;EIF2C2-TRAPPC9|3|fusion;nc|ENSG00000167632|Q96Q05-2|TRAPPC9	EIF2C2-TRAPPC9|4|fusion	EIF2C2-TRAPPC9|4|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	555.2720336914062	2	555.270435	1108.52632	1.3433	0.00074587	1.0356	0.00057506	2.3789	0.0013209	555.2708818898242	145.56	0.80614	145.56	145.32	146.13	0					39	16	3	0	0	0	0.19758	2	17036	17013;17036		76.774	9.2805	1	419590			63426	790	52319	52369	69734;69735	69735					-0.023604215229852343
VYNPTPNSL	9	Unmodified	_VYNPTPNSL_					0	0	0		nc|ENSG00000111799|Q99715-4|COL12A1;ENSG00000111799|ENST00000322507|COL12A1;nc|ENSG00000111799|Q99715-2|COL12A1	nc|ENSG00000111799|Q99715-4|COL12A1	nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-MSMS	OvCa99_classI_Rep5	1	502.75750732421875	2	502.756007	1003.49746	1.9288	0.00096971	0.14162	7.1201E-05	2.0704	0.0010409	502.755975256076	85.259	0.49781	85.259	85.046	85.544	0					35	11	4	0	0	0	0.049969	1	8935	8935		118.74	39.292	1	3683500			63427	2854	52320	52370	69736	69736					-0.0041482282778133595
VYNPVIYVF	9	Unmodified	_VYNPVIYVF_					0	0	0		nc|ENSG00000203668|Q9H1Y3-2|OPN3;ENSG00000054277|ENST00000366554|OPN3;ENST00000462265.5_1_1:241755332-241761290:-|nuORF;ENST00000463155.5_1_1:241757732-241840646:-|nuORF	nc|ENSG00000203668|Q9H1Y3-2|OPN3	nc|ENSG00000203668|Q9H1Y3-2|OPN3	MULTI-MSMS	OvCa99_classI_Rep5	1	557.3045654296875	2	557.302593	1112.59063	1.0659	0.00059404	1.1591	0.00064597	2.225	0.00124	557.3030195594484	151.77	2.0003	151.77	151.15	153.15	0					115	44	6	0	0	0	0.085069	3	17772	17749;17772;17797		101.21	48.074	1	2877800			63428	1207	52321	52371	69737;69738;69739	69738					0.03884101625453695
VYNQLNVADQ	10	Unmodified	_VYNQLNVADQ_					0	0	0			REV__AFF1-UBR5|1|fusion	REV__AFF1-UBR5|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.3521728515625	2	582.288202	1162.56185	1.8324	0.001067	4.3316	0.0025223	6.164	0.0035892	582.290538272616	90.524	0.51061	90.524	90.346	90.857	0					31	12	4	0	0	0	0.026867	1	9721	9721		51.193	17.271	1	2568100	+		63429	15576	52322	52372	69740	69740					-0.01292667741608966
VYNQLNVADQ	10	Unmodified	_VYNQLNVADQ_					0	0	0			REV__AFF1-UBR5|1|fusion	REV__AFF1-UBR5|1|fusion	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	582.288202	1162.56185	-1.6547	-0.00096351	-2.2901	-0.0013335	-3.9447	-0.002297	582.7892364516372	92.744	0.25125	90.237	90.061	90.312	-2.5072	-0.1436	-0.0071101	NaN	56.434	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	7910.5	+		63430	15576	52322	52372							-0.01292667741608966
VYNSEYYHF	9	Unmodified	_VYNSEYYHF_					0	0	0		nc|ENSG00000112655|Q13308-3|PTK7;chr6:43132687-43141668|408|15.38|0.92|4.06|+|ENST00000349241|PTK7,PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;ENST00000487673.5_1_6:43111066-43128616:+|nuORF	nc|ENSG00000112655|Q13308-3|PTK7	nc|ENSG00000112655|Q13308-3|PTK7	MULTI-MSMS	OvCa99_classI_Rep5	1	611.2662353515625	2	611.264196	1220.51384	2.8434	0.0017381	-1.0194	-0.00062313	1.824	0.0011149	611.2635820143689	86.471	2.9999	86.471	86.153	89.153	0					248	72	6	0	0	0	1.2047E-06	7	9100	9100;9130;9160;9191;9221;9253;9282		252.58	161.98	1	147750000			63431	518	52323	52373	69741;69742;69743;69744;69745;69746;69747	69741					-0.08759741661674525
VYNYRKLIL	9	Unmodified	_VYNYRKLIL_					0	0	0		ENSG00000180182|ENST00000324817|MED14;ENST00000496531.2_1_X:40540160-40542133:-|nuORF	ENSG00000180182|ENST00000324817|MED14	ENSG00000180182|ENST00000324817|MED14	MULTI-MSMS	OvCa9_classI_Rep3	3	591.3622436523438	2	591.355691	1180.69683	-0.18923	-0.0001119	3.5193	0.0020812	3.3301	0.0019693	591.3562587131781	130	2.1652	128.88	128.64	130.8	-1.1121					72	43	3	0	0	0	0.46377	1	10307	10307		45.952	4.5253	1	89398			63432	7859	52324	52374	69748	69748					0.1137085719078641
VYPAVMVLL	9	Unmodified	_VYPAVMVLL_					0	0	0		LMBR1-PTPRN2|2|fusion;LMBR1-PTPRN2|3|fusion;LMBR1|p.I303T|1|0.05|ENSG00000105983|chr7:156728651-156728651|A/G|missense_variant;ENSG00000105983|ENST00000353442|LMBR1;nc|ENSG00000105983|Q8WVP7-3|LMBR1;LMBR1-PTPRN2|1|fusion	LMBR1-PTPRN2|2|fusion	LMBR1-PTPRN2|2|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	502.7975158691406	2	502.796089	1003.57763	0.47232	0.00023748	-0.66875	-0.00033624	-0.19643	-9.8764E-05	502.79553120352085	161.11	1.2117	161.11	160.61	161.82	0					52	23	3	0	0	0	0.53728	1	18909	18909		39.021	0	1	256090			63433	14798	52325	52375	69749	69749					0.07597947241731617
VYPDCLPLQLT	11	Unmodified	_VYPDCLPLQLT_					0	0	0			REV__ENSG00000124657|ENST00000244623|OR2B6	REV__ENSG00000124657|ENST00000244623|OR2B6	MULTI-MSMS	OvCa99_classI_Rep5	1	631.32958984375	2	631.328482	1260.64241	0.49594	0.0003131	0.49149	0.00031029	0.98743	0.00062339	631.328843651565	20.986	0.22704	20.986	20.874	21.101	0					10	4	3	0	0	0	0.72479	1	81	81		18.262	0.79408	1	37873	+		63434	18700	52326	52376	69750	69750					0.0225147725707302
VYPDGIRHI	9	Unmodified	_VYPDGIRHI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;SF3B3|p.K976Dfs*14|1|0.12|ENSG00000189091|chr16:70567509-70567510|-/GACTATTTTACCATAATTTTTA|frameshift_variant;SF3B3-DDX19B|4|fusion;SF3B3-DDX19B|1|fusion;ENST00000568291.2_1_16:70588380-70590279:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OvCa99_classI_Rep5	1	535.294189453125	2	535.293091	1068.57163	0.17843	9.5513E-05	-0.98962	-0.00052973	-0.81118	-0.00043422	535.2925523564005	62.642	1.5195	62.642	62.294	63.814	0					118	37	5	0	0	0	0.14998	2	5602	5572;5602		84.916	13.454	1	70230000			63435	8533	52327	52377	69751;69752	69752					0.04008565054414248
VYPDGIRHI	9	Unmodified	_VYPDGIRHI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;SF3B3|p.K976Dfs*14|1|0.12|ENSG00000189091|chr16:70567509-70567510|-/GACTATTTTACCATAATTTTTA|frameshift_variant;SF3B3-DDX19B|4|fusion;SF3B3-DDX19B|1|fusion;ENST00000568291.2_1_16:70588380-70590279:+|nuORF	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	535.293091	1068.57163	-1.6547	-0.00088577	1.7801	0.00095286	0.12535	6.7096E-05	535.7972593973352	65.728	0.34103	62.243	62.082	62.423	-3.4854	-0.19938	0.0028067	NaN	84.916	12	6	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27916			63436	8533	52327	52377							0.04008565054414248
VYPEKLATKF	10	Unmodified	_VYPEKLATKF_					0	0	0		ENSG00000136813|ENST00000684092|ECPAS;nc|ENSG00000136813|Q5VYK3|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	ENSG00000136813|ENST00000684092|ECPAS	MULTI-MSMS	OvCa99_classI_Rep5	1	598.3416137695312	2	598.339707	1194.66486	0.69429	0.00041542	-0.65844	-0.00039397	0.035843	2.1446E-05	598.3392066058362	72.228	1.1174	72.228	71.956	73.074	0					71	27	4	0	0	0	0.29438	2	7012	7012;7044		81.525	27.866	1	13783000			63437	4517	52328	52378	69753;69754	69753					0.07531444716960323
VYPEYVIQY	9	Unmodified	_VYPEYVIQY_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	OvCa9_classI_Rep2	2	587.2951049804688	2	587.294965	1172.57538	-1.7713	-0.0010403	1.8839	0.0011064	0.11261	6.6138E-05	587.2959419520926	118.58	1.9781	118.43	118.08	120.06	-0.14754					123	39	5	0	0	0	0.35444	4	11391	11380;11386;11391;11423		56.721	8.4045	1	499840			63438	1252	52329	52379	69755;69756;69757;69758	69757					-0.00400809962366111
VYPEYVIQY	9	Unmodified	_VYPEYVIQY_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	OvCa9_classI_Rep3	3	587.2946166992188	2	587.294965	1172.57538	-1.0296	-0.0006047	1.0647	0.00062528	0.03504	2.0579E-05	587.295447025385	119.26	2.5013	118.23	117.93	120.43	-1.0271					129	49	5	0	0	0	0.27001	6	9034	9029;9034;9040;9047;9053;9067		66.429	27.176	1	734600			63439	1252	52329	52379	69759;69760;69761;69762;69763;69764	69760					-0.00400809962366111
VYPEYVIQY	9	Unmodified	_VYPEYVIQY_					0	0	0		ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	ENSG00000059378|ENST00000263549|PARP12	MULTI-MSMS	OvCa9_classI_Rep4_	4	587.295166015625	2	587.294965	1172.57538	-1.8305	-0.001075	2.0881	0.0012263	0.25766	0.00015132	587.2961004815837	119.51	2.07	118.17	117.83	119.9	-1.3444					114	39	5	0	0	0	0.46356	1	11216	11216		45.972	11.8	1	737630			63440	1252	52329	52379	69765	69765					-0.00400809962366111
VYPFKPKLTI	10	Unmodified	_VYPFKPKLTI_					0	0	0		ENST00000506359.1_1_4:73012322-73013526:+|nuORF;ENSG00000056291|ENST00000308744|NPFFR2;nc|ENSG00000056291|Q9Y5X5-3|NPFFR2;nc|ENSG00000056291|Q9Y5X5|NPFFR2	ENST00000506359.1_1_4:73012322-73013526:+|nuORF	ENST00000506359.1_1_4:73012322-73013526:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	603.3126831054688	2	603.368267	1204.72198	0.87553	0.00052827	2.7889	0.0016827	3.6645	0.002211	603.3704266401095	91.109	1.4954	89.873	89.094	90.589	-1.2355					50	28	3	0	0	0	0.026849	1	8094	8094		25.574	5.5773	1	46098			63441	1228	52330	52380	69766	69766					0.1278091199337723
VYPGDPLRF	9	Unmodified	_VYPGDPLRF_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MSMS	OvCa99_classI_Rep5	1	532.2835083007812	2	532.282192	1062.54983	-2.0733	-0.0011036	0.52375	0.00027878	-1.5496	-0.00082481	532.2819304789259	103.84	2.217	103.84	103.14	105.36	0					90	51	4	0	0	0	0.2077	2	11645	11615;11645		75.043	7.119	1	16092000			63442	7149	52331	52381	69767;69768	69768					0.021057603058579843
VYPGDPLRF	9	Unmodified	_VYPGDPLRF_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MATCH	OvCa9_classI_Rep2	2		2	532.282192	1062.54983	-1.6883	-0.00089868	4.6923	0.0024976	3.0039	0.0015989	532.7867902915405	104.07	0.94054	103.49	102.93	103.87	-0.57639	-0.10948	0.0021696	NaN	75.043	30	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73288			63443	7149	52331	52381							0.021057603058579843
VYPGDPLRF	9	Unmodified	_VYPGDPLRF_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MATCH	OvCa9_classI_Rep3	3		2	532.282192	1062.54983	0.73231	0.00038979	1.8317	0.000975	2.564	0.0013648	532.2827449539714	104.84	1.0387	103.49	102.95	103.99	-1.3482	-0.10778	-0.00087562	NaN	75.043	36	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47817			63444	7149	52331	52381							0.021057603058579843
VYPGDPLRF	9	Unmodified	_VYPGDPLRF_					0	0	0		ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	ENSG00000170892|ENST00000396388|TSEN34	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	532.282192	1062.54983	-1.1136	-0.00059276	3.0717	0.001635	1.958	0.0010422	532.2835867392206	105.6	0.89982	103.58	103.1	104	-2.0161	-0.022674	0.00044437	NaN	75.043	28	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46220			63445	7149	52331	52381							0.021057603058579843
VYPLLALVAI	10	Unmodified	_VYPLLALVAI_					0	0	0		ENSG00000140323|ENST00000267889|DISP2	ENSG00000140323|ENST00000267889|DISP2	ENSG00000140323|ENST00000267889|DISP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	536.2296142578125	2	536.344261	1070.67397	1.0771	0.00057768	1.6393	0.00087921	2.7163	0.0014569	536.3449101778684	150.59	0.4012	150.59	150.44	150.84	0					11	7	2	0	0	0	0.026672	1	17641	17641		35.201	0	1	36677			63446	4832	52332	52382	69769	69769					0.14145838073318373
VYPLMKEYF	9	Unmodified	_VYPLMKEYF_					0	0	0		ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	ENSG00000100109|ENST00000407690|TFIP11	MULTI-MSMS	OvCa99_classI_Rep5	1	595.30322265625	2	595.301736	1188.58892	0.61441	0.00036576	1.3214	0.00078663	1.9358	0.0011524	595.3024260115109	114.31	2.8947	114.31	113.66	116.55	0					190	62	5	0	0	0	0.10363	3	13052	13028;13052;13076		96.19	26.563	1	10641000			63447	2011	52333	52383	69770;69771;69772	69771					0.0021672454518011364
VYPNWAIGL	9	Unmodified	_VYPNWAIGL_					0	0	0		ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	MULTI-MSMS	OvCa99_classI_Rep5	1	516.78076171875	2	516.779285	1031.54402	0.90967	0.0004701	1.3828	0.00071462	2.2925	0.0011847	516.779739919923	143.29	1.1767	143.29	142.88	144.06	0					58	23	4	0	0	0	0.13154	1	16753	16753		88.643	22.745	1	414680			63448	4062	52334	52384	69773	69773					0.02950661794170628
VYPPENRTL	9	Unmodified	_VYPPENRTL_					0	0	0		ENST00000448093.5_2_6:30028682-30028808:-|nuORF;ENST00000420251.5_1_6:30028682-30028930:-|nuORF	ENST00000448093.5_2_6:30028682-30028808:-|nuORF	ENST00000448093.5_2_6:30028682-30028808:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.8281860351562	2	544.790381	1087.56621	1.5902	0.00086631	3.6442	0.0019853	5.2343	0.0028516	544.792227077483	126.91	0.81717	126.91	126.32	127.14	0					24	17	2	0	0	0	0.027456	1	14664	14664		47.916	15.961	1	192290			63449	11667	52335	52385	69774	69774					0.025928414719373905
VYPPHSHSI	9	Unmodified	_VYPPHSHSI_					0	0	0		ENSG00000166888|ENST00000300134|STAT6;nc|ENSG00000166888|P42226-2|STAT6;nc|ENSG00000166888|P42226-3|STAT6;ENST00000555222.5_1_12:57490357-57492756:-|nuORF	ENSG00000166888|ENST00000300134|STAT6	ENSG00000166888|ENST00000300134|STAT6	MULTI-MSMS	OvCa99_classI_Rep5	1	518.7638549804688	2	518.764166	1035.51378	-1.0767	-0.00055856	0.95813	0.00049704	-0.11859	-6.152E-05	518.7645219853667	42.265	0.81489	42.265	42.024	42.839	0					52	18	4	0	0	0	0.32337	1	2696	2696		60.294	10.269	1	2543200			63450	6730	52336	52386	69775	69775					-0.002556968710223373
VYPPIRHHL	9	Unmodified	_VYPPIRHHL_					0	0	0		nc|ENSG00000155975|Q8NEZ2-3|VPS37A;ENSG00000155975|ENST00000324849|VPS37A;nc|ENSG00000155975|Q8NEZ2-2|VPS37A	nc|ENSG00000155975|Q8NEZ2-3|VPS37A	nc|ENSG00000155975|Q8NEZ2-3|VPS37A	MULTI-MSMS	OvCa99_classI_Rep5	1	566.3262329101562	2	566.324725	1130.6349	-0.32453	-0.00018379	0.11642	6.5929E-05	-0.20811	-0.00011786	566.3246622089753	50.663	1.7288	50.663	49.856	51.585	0					105	39	4	0	0	0	0.46377	3	3854	3829;3854;3874		45.952	11.779	1	1570500			63451	5814	52337	52387	69776;69777;69778	69777					0.07480550562308963
VYPPYLNYL	9	Unmodified	_VYPPYLNYL_					0	0	0		nc|ENSG00000082175|P06401-2|PGR;nc|ENSG00000082175|P06401-5|PGR;PGR|p.E851Sfs*8|1|0.1|ENSG00000082175|chr11:101042041-101042041|T/-|frameshift_variant;ENSG00000082175|ENST00000325455|PGR	nc|ENSG00000082175|P06401-2|PGR	nc|ENSG00000082175|P06401-2|PGR	MULTI-MSMS	OvCa99_classI_Rep5	1	571.3008422851562	2	571.30005	1140.58555	1.1298	0.00064548	2.0161	0.0011518	3.1459	0.0017973	571.3011506170433	144.93	0.77132	144.93	144.5	145.27	0					27	13	3	0	0	0	0.59983	1	16942	16942		31.955	1.4512	1	69885			63452	1672	52338	52388	69779	69779					0.02087797762851551
VYPQYVIEY	9	Unmodified	_VYPQYVIEY_					0	0	0		nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1;ENSG00000105939|ENST00000242351|ZC3HAV1	nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1	nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1	MULTI-MSMS	OvCa9_classI_Rep2	2	587.2949829101562	2	587.294965	1172.57538	-1.5529	-0.000912	1.6237	0.00095357	0.070786	4.1572E-05	587.29575999412	117.87	0.74495	117.72	117.34	118.08	-0.14755					53	14	4	0	0	0	0.27001	9	11295	11284;11289;11295;11301;11307;11313;11319;11326;11338		66.429	25.651	1	675310			63453	2514	52339	52389	69780;69781;69782;69783;69784;69785;69786;69787;69788	69782					-0.004008099623888484
VYPQYVIEY	9	Unmodified	_VYPQYVIEY_					0	0	0		nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1;ENSG00000105939|ENST00000242351|ZC3HAV1	nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1	nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1	MULTI-MSMS	OvCa9_classI_Rep3	3	587.2955932617188	2	587.294965	1172.57538	-1.5752	-0.00092511	1.7804	0.0010456	0.20518	0.0001205	587.295888726077	118.54	0.74387	117.51	117.19	117.93	-1.0271					51	14	4	0	0	0	0.14998	4	8950	8938;8944;8950;8956		84.916	35.474	1	1066300			63454	2514	52339	52389	69789;69790;69791;69792	69791					-0.004008099623888484
VYPQYVIEY	9	Unmodified	_VYPQYVIEY_					0	0	0		nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1;ENSG00000105939|ENST00000242351|ZC3HAV1	nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1	nc|ENSG00000105939|Q7Z2W4-4|ZC3HAV1	MULTI-MSMS	OvCa9_classI_Rep4_	4	587.2950439453125	2	587.294965	1172.57538	-1.6508	-0.00096953	1.7895	0.001051	0.1387	8.1455E-05	587.2959537221889	118.79	0.67799	117.44	117.15	117.83	-1.3444					47	12	4	0	0	0	0.19758	4	11144	11123;11132;11144;11156		76.774	34.378	1	1069100			63455	2514	52339	52389	69793;69794;69795;69796	69795					-0.004008099623888484
VYPSSLSKI	9	Unmodified	_VYPSSLSKI_					0	0	0		nc|ENSG00000111530|Q86VP6-2|CAND1;ENSG00000111530|ENST00000545606|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	nc|ENSG00000111530|Q86VP6-2|CAND1	MULTI-MSMS	OvCa99_classI_Rep5	1	497.2861633300781	2	497.2844	992.554247	1.8611	0.00092551	0.27188	0.0001352	2.133	0.0010607	497.28438870452453	78.142	1.6035	78.142	77.672	79.276	0					93	38	5	0	0	0	0.1804	1	7895	7895		79.713	15.505	1	8586400			63456	2828	52340	52390	69797	69797					0.05767224728754172
VYPTKKHLI	9	Unmodified	_VYPTKKHLI_					0	0	0		ENSG00000185115|ENST00000332303|NSMCE3	ENSG00000185115|ENST00000332303|NSMCE3	ENSG00000185115|ENST00000332303|NSMCE3	MULTI-MSMS	OvCa99_classI_Rep5	1	549.837158203125	2	549.837134	1097.65972	-0.6997	-0.00038472	-0.16898	-9.2911E-05	-0.86868	-0.00047763	549.8367354258074	42.431	0.98872	42.431	42.111	43.1	0					40	22	3	0	0	0	0.34496	1	2732	2732		57.811	11.859	1	525550			63457	8226	52341	52391	69798	69798					0.11479185645021062
VYPTTSRVL	9	Unmodified	_VYPTTSRVL_					0	0	0		ENST00000360244.8_1_1:150238759-150238873:-|nuORF	ENST00000360244.8_1_1:150238759-150238873:-|nuORF	ENST00000360244.8_1_1:150238759-150238873:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	518.2962036132812	2	518.295299	1034.57605	-0.7849	-0.00040681	0.069296	3.5916E-05	-0.7156	-0.00037089	518.2953894902441	93.364	2.7661	91.402	91.079	93.845	-1.9617					164	54	5	0	0	0	0.48324	1	5953	5953		44.117	1.2525	1	8061400			63458	10770	52342	52392	69799	69799					0.060140294773418645
VYPVKYLLSL	10	Unmodified	_VYPVKYLLSL_					0	0	0			REV__nc|ENSG00000084234|Q06481-5|APLP2	REV__nc|ENSG00000084234|Q06481-5|APLP2	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8560791015625	2	597.860275	1193.706	-2.7036	-0.0016164	-3.9017	-0.0023327	-6.6053	-0.0039491	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.65434	1	12539	12539		35.618	1.4457	1	591030	+		63459	17121	52343	52393	69800	69800					0.11689205756488263
VYPWTQRF	8	Unmodified	_VYPWTQRF_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENST00000485743.1_1_11:5247788-5248251:-|nuORF;CON__P02070;ENSG00000223609|ENST00000650601|HBD;CON__Q3SX09;ENSG00000213934|ENST00000330597|HBG1;ENSG00000213931|ENST00000396895|HBE1;ENSG00000196565|ENST00000336906|HBG2	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	OvCa99_classI_Rep5	1	548.7839965820312	2	548.782359	1095.55016	1.9742	0.0010834	0.61671	0.00033844	2.5909	0.0014218	548.7824739396441	120.3	3.6821	120.3	119.83	123.51	0					197	82	4	0	0	0	0.48084	2	13862	13833;13862		79.451	33.479	1	5725800		+	63460	9402	52344	52394	69801;69802	69802					0.006211800257005962
VYQGHTALL	9	Unmodified	_VYQGHTALL_					0	0	0		nc|ENSG00000112655|Q13308-3|PTK7;chr6:43132687-43141668|408|15.38|0.92|4.06|+|ENST00000349241|PTK7,PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;nc|ENSG00000112655|Q13308-5|PTK7	nc|ENSG00000112655|Q13308-3|PTK7	nc|ENSG00000112655|Q13308-3|PTK7	MSMS	OvCa99_classI_Rep5	1	501.2752990722656	2	501.274367	1000.53418	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.329	1	70.329	69.829	70.829	0								0	0	0	0.028596	1	6738	6738		113.41	10.638	1				63461	518	52345	52395	69803	69803					0.033934737887989286
VYQGPQKEP	9	Unmodified	_VYQGPQKEP_					0	0	0		ENSG00000155903|ENST00000286364|RASA2;nc|ENSG00000155903|Q15283|RASA2	ENSG00000155903|ENST00000286364|RASA2	ENSG00000155903|ENST00000286364|RASA2	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.2810668945312	2	523.269281	1044.52401	1.9981	0.0010456	0.33299	0.00017424	2.3311	0.0012198	523.2695188244525	91.76	0.54889	91.76	91.459	92.008	0					24	12	3	0	0	0	0.027455	1	9862	9862		42.396	1.618	1	761280			63462	5808	52346	52396	69804	69804					0.0035286606357658457
VYQHLFTRI	9	Unmodified	_VYQHLFTRI_					0	0	0		ENSG00000242802|ENST00000649063|AP5Z1;nc|ENSG00000242802|O43299-3|AP5Z1;ENST00000477680.5_1_7:4815294-4829561:+|nuORF;nc|ENSG00000242802|O43299-2|AP5Z1;ENST00000496303.5_1_7:4815289-4829878:+|nuORF	ENSG00000242802|ENST00000649063|AP5Z1	ENSG00000242802|ENST00000649063|AP5Z1	MULTI-MSMS	OvCa99_classI_Rep5	1	588.8309326171875	2	588.82984	1175.64513	2.0329	0.001197	0.0034632	2.0392E-06	2.0363	0.001199	588.8298298567888	78.27	1.427	78.27	77.884	79.311	0					96	34	5	0	0	0	0.11322	3	7913	7913;7943;7974		93.598	22.225	1	13253000			63463	9368	52347	52397	69805;69806;69807	69805					0.0643311349688247
VYQKIHNEKF	10	Unmodified	_VYQKIHNEKF_					0	0	0		ENSG00000186020|ENST00000591340|ZNF529	ENSG00000186020|ENST00000591340|ZNF529	ENSG00000186020|ENST00000591340|ZNF529	MSMS	OvCa99_classI_Rep5	1	435.903076171875	3	435.903183	1304.68772	NaN	NaN	NaN	NaN	NaN	NaN	NaN	40.481	1	40.481	39.981	40.981	0								0	0	0	0.12657	1	2460	2460		58.246	0	1				63464	8309	52348	52398	69808	69808					0.04756463834451097
VYQLRFQFL	9	Unmodified	_VYQLRFQFL_					0	0	0		ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	ENSG00000068654|ENST00000263857|POLR1A	MULTI-MSMS	OvCa99_classI_Rep5	1	607.3406982421875	2	607.340041	1212.66553	1.2339	0.00074942	0.2072	0.00012584	1.4411	0.00087527	607.3401790981469	131.55	1.7888	131.55	131.1	132.89	0					110	37	6	0	0	0	0.023378	2	15286	15261;15286		143.02	38.273	1	6899600			63465	1394	52349	52399	69809;69810	69810					0.06770284156687012
VYQLWLDD	8	Unmodified	_VYQLWLDD_					0	0	0		ENST00000503969.5_1_5:76383363-76414258:+|nuORF;ENST00000505918.5_1_5:76383363-76383474:+|nuORF;ENST00000515419.5_1_5:76383372-76414170:+|nuORF;ENST00000514905.5_1_5:76383363-76394499:+|nuORF;ENST00000514640.5_1_5:76383363-76396087:+|nuORF;ENST00000502433.5_1_5:76383363-76414170:+|nuORF;ENST00000512213.5_1_5:76383363-76396087:+|nuORF	ENST00000503969.5_1_5:76383363-76414258:+|nuORF;ENST00000514640.5_1_5:76383363-76396087:+|nuORF	ENST00000514640.5_1_5:76383363-76396087:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.7843017578125	2	526.258382	1050.50221	0.9213	0.00048484	1.6372	0.0008616	2.5585	0.0013464	526.2591431507493	91.117	0.43915	91.117	90.857	91.296	0					19	10	2	0	0	0	0.028476	1	9780	9780		38.806	7.2763	1	804140			63466	12871;12848	52350	52400	69811	69811					-0.021019386850184674
VYQLWLDD	8	Unmodified	_VYQLWLDD_					0	0	0		ENST00000503969.5_1_5:76383363-76414258:+|nuORF;ENST00000505918.5_1_5:76383363-76383474:+|nuORF;ENST00000515419.5_1_5:76383372-76414170:+|nuORF;ENST00000514905.5_1_5:76383363-76394499:+|nuORF;ENST00000514640.5_1_5:76383363-76396087:+|nuORF;ENST00000502433.5_1_5:76383363-76414170:+|nuORF;ENST00000512213.5_1_5:76383363-76396087:+|nuORF	ENST00000503969.5_1_5:76383363-76414258:+|nuORF;ENST00000514640.5_1_5:76383363-76396087:+|nuORF	ENST00000514640.5_1_5:76383363-76396087:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	526.258382	1050.50221	0.42839	0.00022544	-1.3795	-0.00072597	-0.9511	-0.00050053	526.2580267985705	92.174	1.2998	90.938	90.537	91.837	-1.2355	-0.029409	-0.0023098	NaN	38.806	49	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76640			63467	12871;12848	52350	52400							-0.021019386850184674
VYQLWLDD	8	Unmodified	_VYQLWLDD_					0	0	0		ENST00000503969.5_1_5:76383363-76414258:+|nuORF;ENST00000505918.5_1_5:76383363-76383474:+|nuORF;ENST00000515419.5_1_5:76383372-76414170:+|nuORF;ENST00000514905.5_1_5:76383363-76394499:+|nuORF;ENST00000514640.5_1_5:76383363-76396087:+|nuORF;ENST00000502433.5_1_5:76383363-76414170:+|nuORF;ENST00000512213.5_1_5:76383363-76396087:+|nuORF	ENST00000503969.5_1_5:76383363-76414258:+|nuORF;ENST00000514640.5_1_5:76383363-76396087:+|nuORF	ENST00000514640.5_1_5:76383363-76396087:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	526.258382	1050.50221	-1.9969	-0.0010509	0.87368	0.00045978	-1.1232	-0.0005911	526.258882507401	92.9	0.87042	90.938	90.606	91.476	-1.9617	-0.029815	6.1748E-05	NaN	38.806	35	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	120410			63468	12871;12848	52350	52400							-0.021019386850184674
VYQLWLDD	8	Unmodified	_VYQLWLDD_					0	0	0		ENST00000503969.5_1_5:76383363-76414258:+|nuORF;ENST00000505918.5_1_5:76383363-76383474:+|nuORF;ENST00000515419.5_1_5:76383372-76414170:+|nuORF;ENST00000514905.5_1_5:76383363-76394499:+|nuORF;ENST00000514640.5_1_5:76383363-76396087:+|nuORF;ENST00000502433.5_1_5:76383363-76414170:+|nuORF;ENST00000512213.5_1_5:76383363-76396087:+|nuORF	ENST00000503969.5_1_5:76383363-76414258:+|nuORF;ENST00000514640.5_1_5:76383363-76396087:+|nuORF	ENST00000514640.5_1_5:76383363-76396087:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	526.258382	1050.50221	-1.3426	-0.00070657	-0.050474	-2.6562E-05	-1.3931	-0.00073314	526.2587461189528	93.386	0.59637	90.878	90.463	91.059	-2.5072	-0.089426	-0.00091094	NaN	38.806	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	110000			63469	12871;12848	52350	52400							-0.021019386850184674
VYQNEHEVGEA	11	Unmodified	_VYQNEHEVGEA_					0	0	0		ENSG00000198074|ENST00000359579|AKR1B10	ENSG00000198074|ENST00000359579|AKR1B10	ENSG00000198074|ENST00000359579|AKR1B10	MULTI-MSMS	OvCa99_classI_Rep5	1	637.7877197265625	2	637.786024	1273.55749	1.3255	0.00084536	2.763	0.0017622	4.0884	0.0026076	637.7875540326419	156.3	1.6115	156.3	155.79	157.4	0					69	31	3	0	0	0	0.67529	1	18303	18303		37.812	2.6595	1	124730			63470	8780	52351	52401	69812	69812					-0.06834176955158
VYQNHVQHL	9	Unmodified	_VYQNHVQHL_					0	0	0		ENSG00000100852|ENST00000345122|ARHGAP5;nc|ENSG00000100852|Q13017-2|ARHGAP5	ENSG00000100852|ENST00000345122|ARHGAP5	ENSG00000100852|ENST00000345122|ARHGAP5	MULTI-MSMS	OvCa99_classI_Rep5	1	569.2916259765625	2	569.293622	1136.57269	-0.16966	-9.6584E-05	-0.14075	-8.013E-05	-0.31041	-0.00017671	569.2935515452224	40.964	1.0581	40.964	40.795	41.853	0					39	23	2	0	0	0	0.071436	2	2514	2514;2536		106.42	36.344	1	3688400			63471	2112	52352	52402	69813;69814	69813					0.009867794233286986
VYQTTCCLQP	10	Unmodified	_VYQTTCCLQP_					0	0	0		ENSG00000154309|ENST00000675850|DISP1;ENST00000482856.1_1_1:223116165-223116675:+|nuORF	ENSG00000154309|ENST00000675850|DISP1	ENSG00000154309|ENST00000675850|DISP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.85009765625	2	578.262284	1154.51002	-0.23863	-0.00013799	-3.5875	-0.0020745	-3.8261	-0.0022125	578.2601058135133	32.478	0.34775	32.478	32.303	32.651	0					13	6	3	0	0	0	0.027228	1	1404	1404		10.866	0	1	117360			63472	5728	52353	52403	69815	69815					-0.06105870751389375
VYQVLQEHL	9	Unmodified	_VYQVLQEHL_					0	0	0		BMP7-DYNC2LI1|1|fusion;ENSG00000101144|ENST00000395863|BMP7	BMP7-DYNC2LI1|1|fusion	BMP7-DYNC2LI1|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	564.8075561523438	2	564.806031	1127.59751	2.6	0.0014685	0.20711	0.00011697	2.8071	0.0015855	564.8055267351622	91.555	1.0762	91.555	90.976	92.052	0					62	25	4	0	0	0	0.036986	1	9878	9878		129.42	33.388	1	1567500			63473	155	52354	52404	69816	69816					0.038814145060541705
VYQVQGSGLF	10	Unmodified	_VYQVQGSGLF_					0	0	0		tr|A0A553SFD3|A0A553SFD3_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08675PE=4SV=1	tr|A0A553SFD3|A0A553SFD3_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08675PE=4SV=1	tr|A0A553SFD3|A0A553SFD3_NIACIGntRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_08675PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	549.7857666015625	2	549.284931	1096.55531	1.1959	0.00065689	0.32323	0.00017754	1.5191	0.00083443	549.2851249095758	119.17	1.0634	119.17	118.81	119.88	0					74	24	5	0	0	0	0.13777	1	13727	13727		104.06	21.816	1	12749000			63474	33027	52355	52405	69817	69817					0.010894390976773138
VYRALQNHS	9	Unmodified	_VYRALQNHS_					0	0	0		ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENST00000495368.1_1_10:12184516-12209761:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	543.2948608398438	2	544.285797	1086.55704	-0.14499	-7.8915E-05	1.994	0.0010853	1.849	0.0010064	544.2866332804779	118.52	0.74387	117.49	117.19	117.93	-1.0271					22	14	2	0	0	0	0.027462	1	8984	8984		42.396	0	1	18648			63475	12773	52356	52406	69818	69818					0.017224929062649608
VYRALQNHS	9	Unmodified	_VYRALQNHS_					0	0	0		ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENST00000495368.1_1_10:12184516-12209761:+|nuORF	ENST00000495368.1_1_10:12184516-12209761:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	544.285797	1086.55704	-1.6082	-0.00087531	3.3858	0.0018428	1.7776	0.00096751	544.2874567130676	117.88	0.59633	117.73	117.44	118.04	-0.14755	0.21001	0.00020936	NaN	42.396	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15805			63476	12773	52356	52406							0.017224929062649608
VYRARMKGKS	10	Unmodified	_VYRARMKGKS_					0	0	0			REV__ENSG00000134153|ENST00000256545|EMC7	REV__ENSG00000134153|ENST00000256545|EMC7	MULTI-SECPEP	OvCa9_classI_Rep3	3	598.316162109375	2	598.340049	1194.66555	1.3923	0.00083306	-0.33134	-0.00019826	1.0609	0.0006348	598.3390605253079	108.47	0.25603	107.27	107.06	107.32	-1.1978					5	4	2	0	0	0	0.026915	1	7750	7750		14.865	0.72775	1	124660	+		63477	19178	52357	52407	69819	69819					0.07599960885067958
VYRDLRWRFWW	11	Unmodified	_VYRDLRWRFWW_					0	0	0			REV__ENSG00000127995|ENST00000297273|CASD1	REV__ENSG00000127995|ENST00000297273|CASD1	MULTI-MSMS	OvCa99_classI_Rep5	1	561.6279907226562	3	561.628276	1681.863	3.0594	0.0017182	-2.1076	-0.0011837	0.9518	0.00053456	561.627095049437	87.815	0.66912	87.815	87.586	88.255	0					51	15	5	0	0	0	0.72575	1	9308	9308		5.6988	4.3769	1	4786700	+		63478	18836	52358	52408	69820	69820					0.04934303419349817
VYRDLRWRFWW	11	Unmodified	_VYRDLRWRFWW_					0	0	0			REV__ENSG00000127995|ENST00000297273|CASD1	REV__ENSG00000127995|ENST00000297273|CASD1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	561.3515625	3	561.628276	1681.863	0.47653	0.00026763	-0.27578	-0.00015488	0.20076	0.00011275	561.6285122235173	53.15	0.40551	49.942	49.795	50.2	-3.208					10	7	2	0	0	0	0.026553	1	3221	3221		1.3219	0	1	19372	+		63479	18836	52358	52408	69821	69821					0.04934303419349817
VYRDYAMVL	9	Unmodified	_VYRDYAMVL_					0	0	0			REV__nc|ENSG00000254769|Q8NGN8|OR4A4P	REV__nc|ENSG00000254769|Q8NGN8|OR4A4P	MULTI-MSMS	OvCa99_classI_Rep5	1	565.290283203125	2	565.289159	1128.56377	2.0266	0.0011456	-0.7976	-0.00045088	1.229	0.00069473	565.2886348795531	116.97	1.3813	116.97	116.68	118.06	0					79	29	4	0	0	0	0.35444	1	13399	13399		56.721	5.3856	1	9992600	+		63480	29175	52359	52409	69822	69822					0.004626697426374449
VYRLPFPI	8	Unmodified	_VYRLPFPI_					0	0	0		nc|ENSG00000213901|Q6PIS1-2|SLC23A3;ENSG00000213901|ENST00000409878|SLC23A3;nc|ENSG00000213901|Q6PIS1-5|SLC23A3	nc|ENSG00000213901|Q6PIS1-2|SLC23A3	nc|ENSG00000213901|Q6PIS1-2|SLC23A3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.3004150390625	2	502.80002	1003.58549	-0.19275	-9.6917E-05	3.522	0.0017709	3.3293	0.001674	502.80178395469164	115.53	0.64285	114.13	113.82	114.46	-1.3977					34	12	3	0	0	0	0.028476	1	10760	10760		42.474	8.9589	1	384270			63481	9154	52360	52410	69823	69823					0.08383842553507748
VYRNKDALSHF	11	Unmodified	_VYRNKDALSHF_					0	0	0		ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	ENSG00000113845|ENST00000494664|TIMMDC1	MULTI-MSMS	OvCa99_classI_Rep5	1	450.5716552734375	3	450.570204	1348.68878	-0.49872	-0.00022471	0.053084	2.3918E-05	-0.44564	-0.00020079	450.5701716374599	49.84	0.95855	49.84	49.593	50.551	0					51	21	4	0	0	0	0.063347	1	3745	3745		107.45	38.609	1	2134400			63482	3000	52361	52411	69824	69824					0.02838678203352174
VYRRIIKR	8	Unmodified	_VYRRIIKR_					0	0	0			REV__ENSG00000145362|ENST00000357077|ANK2;REV__nc|ENSG00000145362|Q01484-7|ANK2	REV__ENSG00000145362|ENST00000357077|ANK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.8311157226562	2	552.361642	1102.70873	1.9272	0.0010645	2.6637	0.0014713	4.5909	0.0025358	552.8648190573334	77.54	0.46126	77.54	77.211	77.672	0					14	10	2	0	0	0	0.028476	1	7780	7780		19.36	1.0356	1	219780	+		63483	19961;28913	52362	52412	69825	69825					0.1614851872463987
VYRTVIEYY	9	Unmodified	_VYRTVIEYY_					0	0	0		ENSG00000173418|ENST00000334982|NAA20	ENSG00000173418|ENST00000334982|NAA20	ENSG00000173418|ENST00000334982|NAA20	MULTI-MSMS	OvCa9_classI_Rep2	2	603.3129272460938	2	603.313689	1204.61282	0.62584	0.00037758	-0.40815	-0.00024624	0.21769	0.00013133	603.3133341526485	91.307	1.7928	90.071	89.795	91.588	-1.2355					106	33	4	0	0	0	0.3076	1	8100	8100		62.107	8.756	1	687170			63484	7374	52363	52413	69826	69826					0.0187028130321778
VYRTVIEYY	9	Unmodified	_VYRTVIEYY_					0	0	0		ENSG00000173418|ENST00000334982|NAA20	ENSG00000173418|ENST00000334982|NAA20	ENSG00000173418|ENST00000334982|NAA20	MULTI-MSMS	OvCa9_classI_Rep4_	4	603.3128051757812	2	603.313689	1204.61282	-0.24225	-0.00014615	0.31086	0.00018755	0.068616	4.1397E-05	603.3138016507503	92.619	1.2824	90.111	89.857	91.14	-2.5072					84	25	4	0	0	0	0.16562	2	8043	8043;8054		82.241	27.464	1	920840			63485	7374	52363	52413	69827;69828	69827					0.0187028130321778
VYSAGVYRL	9	Unmodified	_VYSAGVYRL_					0	0	0		nc|ENSG00000176248|Q9UJX6-2|ANAPC2;ENSG00000176248|ENST00000323927|ANAPC2	nc|ENSG00000176248|Q9UJX6-2|ANAPC2	nc|ENSG00000176248|Q9UJX6-2|ANAPC2	MULTI-MSMS	OvCa99_classI_Rep5	1	514.2838134765625	2	514.282192	1026.54983	1.8189	0.00093543	0.33805	0.00017385	2.157	0.0011093	514.2822250651142	82.023	0.95835	82.023	81.736	82.694	0					42	22	3	0	0	0	0.064985	1	8479	8479		110.12	33.346	1	1396800			63486	7594	52364	52414	69829	69829					0.037617603058379245
VYSDYLQTI	9	Unmodified	_VYSDYLQTI_					0	0	0		ENSG00000179715|ENST00000546455|PCED1B	ENSG00000179715|ENST00000546455|PCED1B	ENSG00000179715|ENST00000546455|PCED1B	MULTI-MSMS	OvCa99_classI_Rep5	1	551.275634765625	2	551.276772	1100.53899	1.8377	0.0010131	0.61664	0.00033994	2.4543	0.001353	551.276889976966	118.22	0.46729	118.22	118.02	118.49	0					26	9	4	0	0	0	0.2784	1	13558	13558		65.465	14.13	1	225240			63487	7839	52365	52415	69830	69830					-0.0072568685909573105
VYSEAARVLQF	11	Unmodified	_VYSEAARVLQF_					0	0	0		nc|ENSG00000156958|Q01415-2|GALK2;ENSG00000156958|ENST00000560031|GALK2;ENST00000560119.5_1_15:49584731-49620353:+|nuORF	nc|ENSG00000156958|Q01415-2|GALK2	nc|ENSG00000156958|Q01415-2|GALK2	MULTI-MSMS	OvCa99_classI_Rep5	1	641.8458251953125	2	641.843145	1281.67174	1.5748	0.0010108	0.87681	0.00056277	2.4516	0.0015736	641.843541902777	105.8	0.87653	105.8	105.53	106.41	0					41	19	3	0	0	0	0.15616	1	11898	11898		85.862	30.778	1	1269200			63488	5865	52366	52416	69831	69831					0.04216757597555443
VYSEVAAYEF	10	Unmodified	_VYSEVAAYEF_					0	0	0		ENSG00000185721|ENST00000331457|DRG1;ENST00000433341.5_1_22:31795606-31819296:+|nuORF	ENSG00000185721|ENST00000331457|DRG1	ENSG00000185721|ENST00000331457|DRG1	MULTI-MSMS	OvCa99_classI_Rep5	1	589.2765502929688	2	589.274229	1176.53391	1.964	0.0011573	0.56282	0.00033166	2.5268	0.001489	589.2744411454266	116.54	0.85453	116.54	116.23	117.09	0					51	18	4	0	0	0	0.26627	2	13318	13318;13339		84.916	26.134	1	2576600			63489	8275	52367	52417	69832;69833	69832					-0.04729990721716604
VYSEVHFTL	9	Unmodified	_VYSEVHFTL_					0	0	0		nc|ENSG00000171992|Q8N3V7-3|SYNPO;ENSG00000171992|ENST00000307662|SYNPO;nc|ENSG00000171992|Q8N3V7|SYNPO	nc|ENSG00000171992|Q8N3V7-3|SYNPO	nc|ENSG00000171992|Q8N3V7-3|SYNPO	MULTI-MSMS	OvCa99_classI_Rep5	1	547.7814331054688	2	547.779482	1093.54441	-2.0313	-0.0011127	-0.49534	-0.00027134	-2.5266	-0.001384	547.7792891383142	103.78	1.1931	103.78	103.34	104.54	0					75	27	4	0	0	0	0.019428	1	11596	11596		147.69	48.318	1	6305800			63490	7258	52368	52418	69834	69834					0.0013803672338781325
VYSFGFERL	9	Unmodified	_VYSFGFERL_					0	0	0		nc|ENSG00000152683|Q6NXT4-4|SLC30A6;nc|ENSG00000152683|Q6NXT4-3|SLC30A6;SLC30A6|p.G434Efs*10|1|0.06|ENSG00000152683|chr2:32220624-32220640|ATTGGAGCAACTCAAGG/-|frameshift_variant;ENSG00000152683|ENST00000282587|SLC30A6;nc|ENSG00000152683|Q6NXT4-2|SLC30A6	nc|ENSG00000152683|Q6NXT4-4|SLC30A6	nc|ENSG00000152683|Q6NXT4-4|SLC30A6	MULTI-MSMS	OvCa99_classI_Rep5	1	559.28955078125	2	559.287474	1116.5604	1.9715	0.0011026	0.13892	7.7695E-05	2.1104	0.0011803	559.2877919110167	112.12	1.2769	112.12	111.38	112.66	0					68	22	5	0	0	0	0.1149	1	12760	12760		93.143	26.714	1	1915000			63491	5637	52369	52419	69835	69835					0.006777429603062046
VYSHVIQKL	9	Unmodified	_VYSHVIQKL_					0	0	0		ENSG00000135094|ENST00000257549|SDS;SDS|p.N307Rfs*6|1|0.39|ENSG00000135094|chr12:113392982-113393012|GCGCCCGCAGCTGGGCCAGGCTGATGTTGCT/-|frameshift_variant	ENSG00000135094|ENST00000257549|SDS	ENSG00000135094|ENST00000257549|SDS	MULTI-MSMS	OvCa99_classI_Rep5	1	543.8200073242188	2	543.818941	1085.62333	-0.35177	-0.0001913	-0.019044	-1.0357E-05	-0.37081	-0.00020166	543.8189701879855	60.061	1.7351	60.061	59.766	61.501	0					124	41	5	0	0	0	0.010652	4	5198	5198;5224;5256;5316		166.68	59.671	1	45267000			63492	4354	52370	52420	69836;69837;69838;69839	69836					0.08394308748324875
VYSHVIQKL	9	Unmodified	_VYSHVIQKL_					0	0	0		ENSG00000135094|ENST00000257549|SDS;SDS|p.N307Rfs*6|1|0.39|ENSG00000135094|chr12:113392982-113393012|GCGCCCGCAGCTGGGCCAGGCTGATGTTGCT/-|frameshift_variant	ENSG00000135094|ENST00000257549|SDS	ENSG00000135094|ENST00000257549|SDS	MULTI-MATCH	OvCa9_classI_Rep2	2		2	543.818941	1085.62333	-2.0711	-0.0011263	2.9663	0.0016131	0.89515	0.0004868	544.3227175867161	63.108	0.78841	60.364	60.213	61.002	-2.7444	0.15144	0.0031383	NaN	166.68	20	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17834			63493	4354	52370	52420							0.08394308748324875
VYSIISVQL	9	Unmodified	_VYSIISVQL_					0	0	0		ENSG00000135926|ENST00000258412|TMBIM1;ENST00000476429.5_1_2:219143236-219144163:-|nuORF;ENST00000492966.5_1_2:219142618-219144772:-|nuORF;ENST00000466012.5_1_2:219142848-219157252:-|nuORF;ENST00000495113.5_1_2:219143236-219146864:-|nuORF	ENSG00000135926|ENST00000258412|TMBIM1	ENSG00000135926|ENST00000258412|TMBIM1	MULTI-MSMS	OvCa99_classI_Rep5	1	511.3013610839844	2	511.30005	1020.58555	0.94525	0.00048331	0.77606	0.0003968	1.7213	0.00088011	511.3002748466442	142.21	1.0414	142.21	141.93	142.98	0					59	20	5	0	0	0	0.074342	2	16623	16602;16623		104.75	16.992	1	448350			63494	4433	52371	52421	69840;69841	69841					0.07607797762852897
VYSIQLESL	9	Unmodified	_VYSIQLESL_					0	0	0			REV__ENST00000588083.5_1_19:39104803-39108481:-|nuORF	REV__ENST00000588083.5_1_19:39104803-39108481:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	526.285888671875	2	526.28714	1050.55973	-1.0499	-0.00055253	0.59261	0.00031188	-0.45725	-0.00024065	526.2872771805119	103.05	1.5798	102.37	102.03	103.61	-0.68459					85	31	4	0	0	0	0.35444	1	9516	9516		56.721	7.2795	1	429040	+		63495	17683	52372	52422	69842	69842					0.03646903520575506
VYSKTQQSF	9	Unmodified	_VYSKTQQSF_					0	0	0		nc|ENSG00000143569|Q14157-3|UBAP2L;ENSG00000143569|ENST00000428931|UBAP2L;nc|ENSG00000143569|Q14157-5|UBAP2L;WDR59-UBAP2L|1|fusion;CTSB-UBAP2L|1|fusion;ENST00000484819.1_1_1:154238957-154241481:+|nuORF	nc|ENSG00000143569|Q14157-3|UBAP2L	nc|ENSG00000143569|Q14157-3|UBAP2L	MULTI-MSMS	OvCa99_classI_Rep5	1	544.2743530273438	2	544.274564	1086.53457	-0.1147	-6.2427E-05	0.17434	9.4888E-05	0.059641	3.2461E-05	544.2743365498226	46.937	0.87775	46.937	46.587	47.465	0					39	19	3	0	0	0	0.024645	1	3347	3347		141.52	42.891	1	1361900			63496	5073	52373	52423	69843	69843					-0.005231512820046191
VYSLQQFGF	9	Unmodified	_VYSLQQFGF_					0	0	0		ENSG00000049656|ENST00000320895|CLPTM1L;nc|ENSG00000049656|Q96KA5-2|CLPTM1L	ENSG00000049656|ENST00000320895|CLPTM1L	ENSG00000049656|ENST00000320895|CLPTM1L	MULTI-MSMS	OvCa99_classI_Rep5	1	544.7755126953125	2	544.7742	1087.53385	0.82534	0.00044962	1.7195	0.00093675	2.5449	0.0013864	544.775037950738	142.23	0.65054	142.23	141.98	142.64	0					35	12	4	0	0	0	0.053172	2	16629	16607;16629		116.9	20.713	1	318500			63497	1172	52374	52424	69844;69845	69845					-0.00641945931056398
VYSMAILLK	9	Unmodified	_VYSMAILLK_					0	0	0		tr|A0A7D6VNK1|A0A7D6VNK1_9CLOTProtein-glutamateO-methyltransferaseCheROS=ClostridiumintestinaleOX=36845GN=HZF06_15720PE=4SV=1	tr|A0A7D6VNK1|A0A7D6VNK1_9CLOTProtein-glutamateO-methyltransferaseCheROS=ClostridiumintestinaleOX=36845GN=HZF06_15720PE=4SV=1	tr|A0A7D6VNK1|A0A7D6VNK1_9CLOTProtein-glutamateO-methyltransferaseCheROS=ClostridiumintestinaleOX=36845GN=HZF06_15720PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.7694702148438	2	519.306821	1036.59909	-0.67298	-0.00034948	3.7261	0.001935	3.0532	0.0015855	519.3084924212626	55.777	0.59338	52.973	52.681	53.275	-2.804					14	11	2	0	0	0	0.027462	1	3870	3870		26.693	10.22	1	15664			63498	34710	52375	52425	69846	69846					0.08225332270444596
VYSMAILLK	9	Unmodified	_VYSMAILLK_					0	0	0		tr|A0A7D6VNK1|A0A7D6VNK1_9CLOTProtein-glutamateO-methyltransferaseCheROS=ClostridiumintestinaleOX=36845GN=HZF06_15720PE=4SV=1	tr|A0A7D6VNK1|A0A7D6VNK1_9CLOTProtein-glutamateO-methyltransferaseCheROS=ClostridiumintestinaleOX=36845GN=HZF06_15720PE=4SV=1	tr|A0A7D6VNK1|A0A7D6VNK1_9CLOTProtein-glutamateO-methyltransferaseCheROS=ClostridiumintestinaleOX=36845GN=HZF06_15720PE=4SV=1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	519.306821	1036.59909	-0.40285	-0.0002092	0.10904	5.6627E-05	-0.29381	-0.00015258	519.3070271724271	52.576	0.26288	52.576	52.434	52.697	0	-0.32558	-0.0027643	NaN	26.693	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	54476			63499	34710	52375	52425							0.08225332270444596
VYSMAILLK	9	Unmodified	_VYSMAILLK_					0	0	0		tr|A0A7D6VNK1|A0A7D6VNK1_9CLOTProtein-glutamateO-methyltransferaseCheROS=ClostridiumintestinaleOX=36845GN=HZF06_15720PE=4SV=1	tr|A0A7D6VNK1|A0A7D6VNK1_9CLOTProtein-glutamateO-methyltransferaseCheROS=ClostridiumintestinaleOX=36845GN=HZF06_15720PE=4SV=1	tr|A0A7D6VNK1|A0A7D6VNK1_9CLOTProtein-glutamateO-methyltransferaseCheROS=ClostridiumintestinaleOX=36845GN=HZF06_15720PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	519.306821	1036.59909	-0.27314	-0.00014184	3.2758	0.0017011	3.0026	0.0015593	519.3083791306535	56.449	0.80885	53.155	52.769	53.577	-3.2944	0.2536	0.00052468	NaN	26.693	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47830			63500	34710	52375	52425							0.08225332270444596
VYSNSIYEL	9	Unmodified	_VYSNSIYEL_					0	0	0		ENST00000509573.5_1_5:138855949-138860944:-|nuORF;ENST00000507297.5_1_5:138855848-138858268:-|nuORF;ENSG00000184584|ENST00000330794|STING1	ENST00000509573.5_1_5:138855949-138860944:-|nuORF	ENST00000509573.5_1_5:138855949-138860944:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	544.2710571289062	2	544.268947	1086.52334	1.73	0.00094156	0.35817	0.00019494	2.0881	0.0011365	544.2690517715992	110.15	0.9878	110.15	109.81	110.8	0					52	21	4	0	0	0	0.064985	1	12499	12499		110.12	24.76	1	1668100			63501	8173	52376	52426	69847	69847					-0.01645973376139409
VYSPHLIPG	9	Unmodified	_VYSPHLIPG_					0	0	0			REV__ENST00000593832.1_1_19:17691448-17692250:+|nuORF	REV__ENST00000593832.1_1_19:17691448-17692250:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.2809753417969	2	491.77146	981.528367	1.5796	0.00077683	0.85467	0.0004203	2.4343	0.0011971	491.7715131523431	113.74	0.79103	113.74	113.5	114.29	0					35	17	3	0	0	0	0.027462	1	12952	12952		31.955	0	1	621730	+		63502	27971	52377	52427	69848	69848					0.03686375277140996
VYSPHVLNL	9	Unmodified	_VYSPHVLNL_					0	0	0		nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3;DNM1|p.M272Tfs*25|1|0.31|ENSG00000106976|chr9:128220306-128220307|-/CCCAGCACTTTGGGAGGCCAAGCCGGGAGGAT|frameshift_variant;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1	nc|ENSG00000079805|P50570-3|DNM2	nc|ENSG00000079805|P50570-3|DNM2	MULTI-MSMS	OvCa99_classI_Rep5	1	521.29150390625	2	521.290017	1040.56548	1.7156	0.00089434	0.50781	0.00026472	2.2234	0.0011591	521.2902795536878	96.603	1.4024	96.603	96.378	97.78	0					71	32	3	0	0	0	0.0080801	3	10600	10571;10600;10627		201.49	107.48	1	30485000			63503	1621	52378	52428	69849;69850;69851	69850					0.0468204682290434
VYSPHVLNLTL	11	Unmodified	_VYSPHVLNLTL_					0	0	0		nc|ENSG00000079805|P50570-3|DNM2;nc|ENSG00000079805|P50570-2|DNM2;nc|ENSG00000079805|P50570-5|DNM2;nc|ENSG00000079805|P50570|DNM2;ENSG00000079805|ENST00000389253|DNM2;nc|ENSG00000197959|Q9UQ16-5|DNM3;nc|ENSG00000197959|Q9UQ16-2|DNM3;ENSG00000197959|ENST00000627582|DNM3;nc|ENSG00000197959|Q9UQ16|DNM3;nc|ENSG00000197959|Q9UQ16-4|DNM3;DNM1|p.M272Tfs*25|1|0.31|ENSG00000106976|chr9:128220306-128220307|-/CCCAGCACTTTGGGAGGCCAAGCCGGGAGGAT|frameshift_variant;ENST00000441149.6_1_9:130980552-131010310:+|nuORF;nc|ENSG00000106976|Q05193-5|DNM1;nc|ENSG00000106976|Q05193-3|DNM1;nc|ENSG00000106976|Q05193-2|DNM1;ENSG00000106976|ENST00000372923|DNM1	nc|ENSG00000079805|P50570-3|DNM2	nc|ENSG00000079805|P50570-3|DNM2	MULTI-MSMS	OvCa99_classI_Rep5	1	628.355224609375	2	628.355888	1254.69722	1.6405	0.0010308	0.42442	0.00026669	2.065	0.0012975	628.3561759451613	119.77	0.61367	119.77	119.52	120.14	0					34	14	4	0	0	0	0.055892	1	13754	13754		112.11	55.673	1	982910			63504	1621	52379	52429	69852	69852					0.08006232119987544
VYSPKSPSL	9	Unmodified	_VYSPKSPSL_					0	0	0		nc|ENSG00000102858|O60291-4|MGRN1;nc|ENSG00000102858|O60291|MGRN1;nc|ENSG00000102858|O60291-3|MGRN1;ENSG00000102858|ENST00000262370|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	nc|ENSG00000102858|O60291-4|MGRN1	MSMS	OvCa99_classI_Rep5	1	489.2704772949219	2	489.26875	976.522947	NaN	NaN	NaN	NaN	NaN	NaN	NaN	65.899	1	65.899	65.399	66.399	0								0	0	0	0.035748	1	6077	6077		85.161	5.4482	1				63505	2259	52380	52430	69853	69853					0.03374651694673503
VYSQILRKL	9	Unmodified	_VYSQILRKL_					0	0	0		ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF;nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85;ENST00000583548.1_1_17:73204633-73212422:+|nuORF;ENST00000577208.5_1_17:73201841-73212422:+|nuORF	ENST00000449421.6_1_17:73205928-73222855:+|nuORF	ENST00000449421.6_1_17:73205928-73222855:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	560.351318359375	2	560.347866	1118.68118	2.3652	0.0013253	-0.30377	-0.00017021	2.0614	0.0011551	560.3476278464186	77.898	1.0394	77.898	77.544	78.583	0					54	24	4	0	0	0	0.094616	1	7865	7865		98.629	21.855	1	3506500			63506	3709	52381	52431	69854	69854					0.1265857067376146
VYSQIPAAVKL	11	Unmodified	_VYSQIPAAVKL_					0	0	0		AFF1-UBR5|1|fusion;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	AFF1-UBR5|1|fusion	AFF1-UBR5|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	594.85546875	2	594.852981	1187.69141	2.1977	0.0013073	-0.14045	-8.3546E-05	2.0573	0.0012238	594.852792212693	100.14	1.0831	100.14	99.856	100.94	0					77	25	5	0	0	0	0.070445	1	11077	11077		134.77	49.605	1	9126100			63507	45	52382	52432	69855	69855					0.10507133608325603
VYSQIPAAVKL	11	Unmodified	_VYSQIPAAVKL_					0	0	0		AFF1-UBR5|1|fusion;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	AFF1-UBR5|1|fusion	AFF1-UBR5|1|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	594.852981	1187.69141	-1.5141	-0.00090067	1.236	0.00073526	-0.27807	-0.00016541	594.8535693706139	100.65	1.042	99.818	99.558	100.6	-0.83051	-0.1086	0.0010424	NaN	134.77	41	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87068			63508	45	52382	52432							0.10507133608325603
VYSQIPAAVKL	11	Unmodified	_VYSQIPAAVKL_					0	0	0		AFF1-UBR5|1|fusion;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	AFF1-UBR5|1|fusion	AFF1-UBR5|1|fusion	MULTI-MATCH	OvCa9_classI_Rep3	3		2	594.852981	1187.69141	-0.57409	-0.0003415	0.58527	0.00034815	0.011179	6.65E-06	594.8531244591178	101.47	1.206	99.862	99.498	100.7	-1.6053	-0.065166	0.00026815	NaN	134.77	53	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	96053			63509	45	52382	52432							0.10507133608325603
VYSQIPAAVKL	11	Unmodified	_VYSQIPAAVKL_					0	0	0		AFF1-UBR5|1|fusion;nc|ENSG00000104517|O95071-2|UBR5;ENSG00000104517|ENST00000520539|UBR5	AFF1-UBR5|1|fusion	AFF1-UBR5|1|fusion	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	594.852981	1187.69141	0.23338	0.00013883	-0.50888	-0.00030271	-0.2755	-0.00016388	594.8524756069795	102.09	1.5195	99.89	99.573	101.09	-2.1994	-0.037274	-0.0010336	NaN	134.77	54	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81875			63510	45	52382	52432							0.10507133608325603
VYSRTFTW	8	Unmodified	_VYSRTFTW_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	OvCa99_classI_Rep5	1	530.2694091796875	2	530.266542	1058.51853	2.7759	0.001472	0.17886	9.4843E-05	2.9548	0.0015668	530.2663955164675	89.431	0.86681	89.431	89.153	90.02	0					44	20	3	0	0	0	0.57734	1	9545	9545		68.787	12.066	1	2508100			63511	8756	52383	52433	69856	69856					-0.008388127282387359
VYSRTFTWL	9	Unmodified	_VYSRTFTWL_					0	0	0		nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	OvCa99_classI_Rep5	1	586.8096923828125	2	586.808574	1171.60259	1.1527	0.0006764	0.81194	0.00047645	1.9646	0.0011528	586.8089620538643	111.49	1.632	111.49	111.07	112.7	0					84	35	3	0	0	0	0.060996	3	12670	12648;12670;12694		112.41	24.867	1	3926300			63512	8756	52384	52434	69857;69858;69859	69858					0.02365718368673697
VYSRYILVPR	10	Unmodified	_VYSRYILVPR_					0	0	0		tr|A0A553SK60|A0A553SK60_NIACIDUF4288domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18035PE=4SV=1	tr|A0A553SK60|A0A553SK60_NIACIDUF4288domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18035PE=4SV=1	tr|A0A553SK60|A0A553SK60_NIACIDUF4288domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18035PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3685302734375	2	633.371872	1264.72919	-4.1446	-0.0026251	-0.18183	-0.00011517	-4.3265	-0.0027403	633.3716506579397	149.94	3.0119	148.99	147.85	150.86	-0.9512					218	59	5	0	0	0	0.69073	1	12806	12806		31.53	8.0071	1	281260			63513	33581	52385	52435	69860	69860					0.10741644593804267
VYSWRSHGAE	10	Unmodified	_VYSWRSHGAE_					0	0	0		HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|186|1|anti-sense	HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|186|1|anti-sense	HERVH48-int_dup24|chr4:19887557-19893979:+|2.177795351046405|0.1078513195373675|4.34|428.0|186|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	595.3024291992188	2	596.280712	1190.54687	1.5948	0.00095093	-2.4319	-0.0014501	-0.83712	-0.00049916	596.2792825209567	113.91	0.3605	113.91	113.7	114.06	0					12	7	2	0	0	0	0.026891	1	13005	13005		31.53	0	1	151750			63514	14453	52386	52436	69861	69861					-0.04078114818958056
VYTAQPRP	8	Unmodified	_VYTAQPRP_					0	0	0			REV__ENSG00000174332|ENST00000628545|GLIS1	REV__ENSG00000174332|ENST00000628545|GLIS1	MULTI-MSMS	OvCa99_classI_Rep5	1	466.25457763671875	2	466.253434	930.492316	1.8467	0.00086104	0.90601	0.00042243	2.7527	0.0012835	466.25358825221014	93.124	0.54315	93.124	92.803	93.346	0					22	12	2	0	0	0	0.60331	1	10093	10093		63.306	6.5852	1	988890	+		63515	21825	52387	52437	69862	69862					0.024289181002814075
VYTDFAFRI	9	Unmodified	_VYTDFAFRI_					0	0	0		ENSG00000162408|ENST00000377705|NOL9;ENST00000462798.1_1_1:6592521-6593409:-|nuORF	ENSG00000162408|ENST00000377705|NOL9	ENSG00000162408|ENST00000377705|NOL9	MULTI-MSMS	OvCa99_classI_Rep5	1	566.2962646484375	2	566.295299	1130.57605	2.739	0.0015511	-1.0233	-0.0005795	1.7157	0.00097157	566.2950724448119	121.45	1.0341	121.45	121.19	122.22	0					106	22	7	0	0	0	0.010652	2	13981	13959;13981		166.68	89.904	1	1516100			63516	6178	52388	52438	69863;69864	69864					0.015980294773271453
VYTHNLYYL	9	Unmodified	_VYTHNLYYL_					0	0	0		ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	ENSG00000198954|ENST00000361983|KIFBP	MULTI-MSMS	OvCa99_classI_Rep5	1	593.299560546875	2	593.300581	1184.58661	2.2713	0.0013476	-0.29137	-0.00017287	1.98	0.0011747	593.2994408285551	95.258	0.8366	95.258	94.819	95.656	0					46	19	4	0	0	0	0.44568	1	10393	10393		47.657	1.6851	1	2543000			63517	8917	52389	52439	69865	69865					0.001700121317526282
VYTKKTTKL	9	Unmodified	_VYTKKTTKL_					0	0	0		nc|ENSG00000148396|O15027-2|SEC16A;nc|ENSG00000148396|O15027-4|SEC16A;nc|ENSG00000148396|O15027-3|SEC16A;ENSG00000148396|ENST00000684901|SEC16A;nc|ENSG00000148396|O15027-5|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	nc|ENSG00000148396|O15027-2|SEC16A	MULTI-MSMS	OvCa99_classI_Rep5	1	541.334716796875	2	541.334424	1080.6543	-0.30139	-0.00016315	-0.43399	-0.00023493	-0.73538	-0.00039809	541.3340461540552	29.76	0.74977	29.76	29.436	30.186	0					28	14	4	0	0	0	0.44248	1	1086	1086		47.96	15.147	1	412180			63518	5408	52390	52440	69866	69866					0.11719462062546881
VYTKTISLW	9	Unmodified	_VYTKTISLW_					0	0	0		ENSG00000063601|ENST00000445323|MTMR1;nc|ENSG00000063601|Q13613|MTMR1	ENSG00000063601|ENST00000445323|MTMR1	ENSG00000063601|ENST00000445323|MTMR1	MULTI-MSMS	OvCa99_classI_Rep5	1	555.81494140625	2	555.813325	1109.6121	-1.1311	-0.00062866	-0.23997	-0.00013338	-1.371	-0.00076204	555.8130299854377	104.38	1.2937	104.38	104.11	105.4	0					51	28	3	0	0	0	0.035142	1	11702	11702		131.03	32.402	1	1293800			63519	1290	52391	52441	69867	69867					0.061674866541807205
VYTLLTTHL	9	Unmodified	_VYTLLTTHL_					0	0	0		nc|ENSG00000173715|Q8N6T0-5|TOP6BL;ENSG00000173715|ENST00000540737|C11orf80;nc|ENSG00000173715|Q8N6T0-4|TOP6BL;nc|ENSG00000173715|Q8N6T0-1|TOP6BL	nc|ENSG00000173715|Q8N6T0-5|TOP6BL	nc|ENSG00000173715|Q8N6T0-5|TOP6BL	MULTI-MSMS	OvCa99_classI_Rep5	1	530.806396484375	2	530.8055	1059.59645	2.5162	0.0013356	-0.53181	-0.00028229	1.9844	0.0010533	530.805050390683	108.02	0.5947	108.02	107.82	108.41	0					36	13	4	0	0	0	0.14739	1	12206	12206		85.359	26.578	1	1096200			63520	7408	52392	52442	69868	69868					0.06903200137116983
VYTPTDTLVF	10	Unmodified	_VYTPTDTLVF_					0	0	0		ENSG00000173120|ENST00000529006|KDM2A;nc|ENSG00000173120|Q9Y2K7-3|KDM2A;ENST00000525379.1_1_11:66985159-66986889:+|nuORF	ENSG00000173120|ENST00000529006|KDM2A	ENSG00000173120|ENST00000529006|KDM2A	MULTI-MSMS	OvCa99_classI_Rep5	1	578.3027954101562	2	578.300247	1154.58594	1.6656	0.0009632	0.68783	0.00039777	2.3534	0.001361	578.3004581589761	134.09	0.51993	134.09	133.86	134.38	0					28	10	3	0	0	0	0.37918	1	15592	15592		71.296	13.484	1	393490			63521	7350	52393	52443	69869	69869					0.014831726920419896
VYTRHMTWI	9	Unmodified	_VYTRHMTWI_					0	0	0		ENST00000481352.6_1_6:43488011-43488806:+|nuORF;nc|ENSG00000171453|O15160-2|POLR1C;ENSG00000171453|ENST00000642195|POLR1C;ENST00000455605.2_1_6:43488011-43488227:+|nuORF	ENST00000481352.6_1_6:43488011-43488806:+|nuORF	ENST00000481352.6_1_6:43488011-43488806:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	603.809326171875	2	603.808051	1205.60155	2.7923	0.001686	-0.95955	-0.00057939	1.8327	0.0011066	603.8072369911515	75.388	0.79626	75.388	75.005	75.801	0					38	19	3	0	0	0	0.16264	1	7502	7502		82.75	21.059	1	2704200			63522	7196	52394	52444	69870	69870					0.006971807281161091
VYTRVVRRT	9	Unmodified	_VYTRVVRRT_					0	0	0		ENST00000477618.1_1_9:74817496-74842957:+|nuORF;nc|ENSG00000119125|Q9Y2T3-2|GDA;ENSG00000119125|ENST00000358399|GDA;nc|ENSG00000119125|Q9Y2T3-3|GDA	ENST00000477618.1_1_9:74817496-74842957:+|nuORF	ENST00000477618.1_1_9:74817496-74842957:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	575.3450317382812	2	575.346189	1148.67783	-4.8723	-0.0028032	3.718	0.0021391	-1.1543	-0.00066411	575.3482857575835	154.87	1.1278	154.64	154.34	155.47	-0.22696					59	30	3	0	0	0	0.69403	1	15773	15773		19.997	1.7347	1	84487			63523	3342	52395	52445	69871	69871					0.10943320619730912
VYTSGVYHI	9	Unmodified	_VYTSGVYHI_					0	0	0		TNS2|p.P1240Lfs*67|1|0.09|ENSG00000111077|chr12:53062426-53062427|-/T|frameshift_variant;ENST00000549311.7_1_12:53443879-53456445:+|nuORF;nc|ENSG00000111077|Q63HR2-6|TNS2;ENSG00000111077|ENST00000314250|TNS2;nc|ENSG00000111077|Q63HR2-4|TNS2;nc|ENSG00000111077|Q63HR2-5|TNS2;nc|ENSG00000111077|Q63HR2-2|TNS2	TNS2|p.P1240Lfs*67|1|0.09|ENSG00000111077|chr12:53062426-53062427|-/T|frameshift_variant	TNS2|p.P1240Lfs*67|1|0.09|ENSG00000111077|chr12:53062426-53062427|-/T|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	519.7673950195312	2	519.766374	1037.5182	1.5746	0.00081844	0.78664	0.00040887	2.3613	0.0012273	519.766847882521	78.567	1.7016	78.567	77.844	79.546	0					93	41	5	0	0	0	0.037679	2	7990	7960;7990		128.82	63.013	1	24426000			63524	2809	52396	52446	69872;69873	69873					0.0009376755190260155
VYTTKIITKVV	11	Unmodified	_VYTTKIITKVV_					0	0	0		nc|ENSG00000133110|Q15063-10|POSTN;nc|ENSG00000133110|Q15063-9|POSTN;nc|ENSG00000133110|Q15063-8|POSTN;POSTN|p.V823Sfs*5|1|0.55|ENSG00000133110|chr13:37564525-37564526|-/T|frameshift_variant;ENSG00000133110|ENST00000379747|POSTN	nc|ENSG00000133110|Q15063-10|POSTN	nc|ENSG00000133110|Q15063-10|POSTN	MULTI-SECPEP	OvCa9_classI_Rep3	3	632.3621215820312	2	632.897389	1263.78022	-6.4807	-0.0041016	-1.5384	-0.00097367	-8.0192	-0.0050753	633.3980653756672	163.17	0.37059	161.78	161.53	161.9	-1.3925					12	7	2	0	0	0	0.026259	1	14211	14211		29.17	9.1733	1	18469			63525	4201	52397	52447	69874	69874					0.1588854884794273
VYTTLYRGQL	10	Unmodified	_VYTTLYRGQL_					0	0	0			REV__tr|A0A7D7ABP1|A0A7D7ABP1_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16140PE=4SV=1	REV__tr|A0A7D7ABP1|A0A7D7ABP1_9CLOTSubstrate-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16140PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	405.22454833984375	3	405.224034	1212.65027	0.82412	0.00033395	0.046199	1.8721E-05	0.87031	0.00035267	405.22394745011525	33.608	1.0168	33.608	33.335	34.351	0					47	20	5	0	0	0	0.53807	1	1552	1552		49.536	0.094497	1	810610	+		63526	32678	52398	52448	69875	69875					0.0524537256885651
VYTTTVHWL	9	Unmodified	_VYTTTVHWL_					0	0	0		PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant;PRPF8|p.Q2065Hfs*8|1|0.04|ENSG00000174231|chr17:1653809-1653810|-/G|frameshift_variant;ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.Q1835Afs*4|1|0.07|ENSG00000174231|chr17:1658255-1658256|-/C|frameshift_variant;PRPF8|p.F1684Dfs*30|1|0.07|ENSG00000174231|chr17:1659445-1659446|-/AAGTCAGGAGATCGAGACCATC|frameshift_variant	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	560.2964477539062	2	560.295299	1118.57605	1.3237	0.00074164	0.96858	0.00054269	2.2923	0.0012843	560.2957416562074	101.93	1.1963	101.93	101.57	102.76	0					76	27	4	0	0	0	0.064607	2	11333	11333;11356		110.34	41.55	1	8532600			63527	7449	52399	52449	69876;69877	69876					0.021500294773204587
VYTVHHVVW	9	Unmodified	_VYTVHHVVW_					0	0	0		ENSG00000099308|ENST00000687212|MAST3;nc|ENSG00000099308|O60307|MAST3	ENSG00000099308|ENST00000687212|MAST3	ENSG00000099308|ENST00000687212|MAST3	MULTI-MSMS	OvCa99_classI_Rep5	1	570.3045654296875	2	570.303458	1138.59236	0.40759	0.00023245	0.12745	7.2685E-05	0.53504	0.00030513	570.303598870118	72.551	0.55063	72.551	72.291	72.842	0					37	13	4	0	0	0	0.073432	1	7068	7068		105.27	44.297	1	2014400			63528	1967	52400	52450	69878	69878					0.028611554340841394
VYTVVDEMF	9	Unmodified	_VYTVVDEMF_					0	0	0		GANC-AP2S1|1|fusion;ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	GANC-AP2S1|1|fusion	GANC-AP2S1|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	551.76171875	2	551.759901	1101.50525	1.9317	0.0010659	0.059516	3.2839E-05	1.9912	0.0010987	551.7597581865883	136.86	1.0103	136.86	136.58	137.59	0					33	20	2	0	0	0	0.12365	1	15966	15966		90.777	27.47	1	612590			63529	1125	52401	52451	69879	69879					-0.04144431622512457
VYTVVDEMFL	10	Unmodified	_VYTVVDEMFL_					0	0	0		GANC-AP2S1|1|fusion;ENSG00000042753|ENST00000263270|AP2S1;nc|ENSG00000042753|P53680-2|AP2S1	GANC-AP2S1|1|fusion	GANC-AP2S1|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	608.30322265625	2	608.301933	1214.58931	1.3085	0.00079599	0.82738	0.0005033	2.1359	0.0012993	608.3023250841394	155.63	1.0704	155.63	155.33	156.4	0					32	20	2	0	0	0	0.48198	1	18232	18232		56.721	12.604	1	235060			63530	1125	52402	52452	69880	69880					-0.009399005256000237
VYTVVLTG	8	Unmodified	_VYTVVLTG_					0	0	0			REV__ENSG00000162654|ENST00000355754|GBP4	REV__ENSG00000162654|ENST00000355754|GBP4	MULTI-MSMS	OvCa9_classI_Rep3	3	426.24591064453125	2	426.247286	850.48002	-1.1759	-0.00050123	-1.8651	-0.00079498	-3.041	-0.0012962	426.2464135300909	139.12	1.5749	138.06	137.54	139.11	-1.0595					80	31	4	0	0	0	0.75661	1	11450	11450		19.36	0	1	422340	+		63531	20761	52403	52453	69881	69881					0.048798816372254805
VYVAAVREF	9	Unmodified	_VYVAAVREF_					0	0	0		WDR75|p.V629Wfs*34|1|0.04|ENSG00000115368|chr2:189470140-189470141|-/TGGAACCCGATCCTAATTCAGAGAATATTGCT|frameshift_variant;ENST00000436347.5_1_2:190313199-190340140:+|nuORF;ENSG00000115368|ENST00000314761|WDR75	WDR75|p.V629Wfs*34|1|0.04|ENSG00000115368|chr2:189470140-189470141|-/TGGAACCCGATCCTAATTCAGAGAATATTGCT|frameshift_variant	WDR75|p.V629Wfs*34|1|0.04|ENSG00000115368|chr2:189470140-189470141|-/TGGAACCCGATCCTAATTCAGAGAATATTGCT|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	527.2922973632812	2	527.290017	1052.56548	2.7683	0.0014597	-1.1086	-0.00058456	1.6596	0.00087512	527.2895082023208	88.632	0.82771	88.632	88.255	89.082	0					61	19	5	0	0	0	0.22035	1	9446	9446		72.879	20.58	1	1303000			63532	3091	52404	52454	69882	69882					0.04130046822888289
VYVAGAPRF	9	Unmodified	_VYVAGAPRF_					0	0	0		ENSG00000137809|ENST00000315757|ITGA11;nc|ENSG00000137809|Q9UKX5-2|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	ENSG00000137809|ENST00000315757|ITGA11	MULTI-MSMS	OvCa99_classI_Rep5	1	490.27349853515625	2	490.271627	978.528701	0.84711	0.00041531	1.0438	0.00051176	1.8909	0.00092707	490.2719598890651	83.311	0.55102	83.311	83.078	83.629	0					33	12	3	0	0	0	0.27546	1	8657	8657		65.803	7.9919	1	2250200			63533	4619	52405	52455	69883	69883					0.03857794996986286
VYVATRPTI	9	Unmodified	_VYVATRPTI_					0	0	0		ENSG00000166002|ENST00000298966|SMCO4	ENSG00000166002|ENST00000298966|SMCO4	ENSG00000166002|ENST00000298966|SMCO4	MULTI-MSMS	OvCa99_classI_Rep5	1	510.2999572753906	2	510.297842	1018.58113	0.56293	0.00028726	0.1387	7.0777E-05	0.70163	0.00035804	510.2978016499381	74.197	0.76713	74.197	73.868	74.635	0					33	19	3	0	0	0	0.043101	1	7318	7318		124.08	52.203	1	3241200			63534	6627	52406	52456	69884	69884					0.07258333339962064
VYVDGKPEIQ	10	Unmodified	_VYVDGKPEIQ_					0	0	0		SLC17A8|p.R189Efs*6|1|0.05|ENSG00000179520|chr12:100393459-100393459|C/-|frameshift_variant;nc|ENSG00000179520|Q8NDX2-2|SLC17A8;ENSG00000179520|ENST00000323346|SLC17A8	SLC17A8|p.R189Efs*6|1|0.05|ENSG00000179520|chr12:100393459-100393459|C/-|frameshift_variant	SLC17A8|p.R189Efs*6|1|0.05|ENSG00000179520|chr12:100393459-100393459|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	574.3023681640625	2	574.303321	1146.59209	-0.32227	-0.00018508	-3.9222	-0.0022525	-4.2445	-0.0024376	574.3012965384783	30.687	0.83693	27.977	27.804	28.641	-2.7097					34	16	3	0	0	0	0.79917	1	894	894		19.104	2.6304	1	116960			63535	7827	52407	52457	69885	69885					0.024656909235773128
VYVDLGGSHVF	11	Unmodified	_VYVDLGGSHVF_					0	0	0		ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	ENSG00000165733|ENST00000374518|BMS1	MULTI-MSMS	OvCa99_classI_Rep5	1	596.8043212890625	2	596.803488	1191.59242	1.8472	0.0011024	-0.17686	-0.00010555	1.6704	0.00099689	596.8033923923639	108.87	2.8826	108.87	108.54	111.42	0					143	64	3	0	0	0	1.7896E-13	3	12305	12305;12329;12353		205.58	123.34	1	28301000			63536	6596	52408	52458	69886;69887;69888	69886					0.004291106434266112
VYVERAEVL	9	Unmodified	_VYVERAEVL_					0	0	0		ENSG00000089234|ENST00000419234|BRAP	ENSG00000089234|ENST00000419234|BRAP	ENSG00000089234|ENST00000419234|BRAP	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.8270874023438	2	539.300581	1076.58661	2.1035	0.0011344	-0.04532	-2.4441E-05	2.0582	0.00111	539.3002713795431	79.786	1.6424	79.786	79.394	81.037	0					72	39	4	0	0	0	0.027425	1	8144	8144		82.75	31.558	1	6465200			63537	1817	52409	52459	69889	69889					0.05138012131760661
VYVGAVNRI	9	Unmodified	_VYVGAVNRI_					0	0	0		ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	MULTI-MSMS	OvCa99_classI_Rep5	1	495.79205322265625	2	495.790184	989.565815	2.4583	0.0012188	-0.59716	-0.00029607	1.8612	0.00092274	495.78961837500447	75.226	0.67693	75.226	74.962	75.639	0					32	16	3	0	0	0	0.21395	1	7483	7483		73.975	2.5968	1	1180900			63538	3028	52410	52460	69890	69890					0.0706146654274562
VYVGSFSWW	9	Unmodified	_VYVGSFSWW_					0	0	0		ENSG00000149532|ENST00000439958|CPSF7;nc|ENSG00000149532|Q8N684|CPSF7;nc|ENSG00000149532|Q8N684-3|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	ENSG00000149532|ENST00000439958|CPSF7	MULTI-MSMS	OvCa99_classI_Rep5	1	565.7706909179688	2	565.768917	1129.52328	1.0921	0.0006179	2.6498	0.0014992	3.7419	0.002117	565.769104952001	158.21	1.4829	158.21	157.75	159.24	0					82	30	5	0	0	0	0.14739	1	18539	18539		85.359	27.548	1	233690			63539	5467	52411	52461	69891	69891					-0.03629928585473863
VYVKDLSSF	9	Unmodified	_VYVKDLSSF_					0	0	0		ENSG00000101350|ENST00000375712|KIF3B;KIF3B|p.E250Cfs*25|1|0.1|ENSG00000101350|chr20:32310524-32310525|-/TGTACGATGAGACGTTCCGACCACTTGTTGACTCT|frameshift_variant	ENSG00000101350|ENST00000375712|KIF3B	ENSG00000101350|ENST00000375712|KIF3B	MULTI-MSMS	OvCa99_classI_Rep5	1	529.2830810546875	2	529.281857	1056.54916	1.9613	0.0010381	-0.36008	-0.00019059	1.6013	0.00084752	529.2817497969754	92.713	0.9196	92.713	92.385	93.305	0					62	21	5	0	0	0	0.070405	2	10048	10018;10048		107.01	41.204	1	10186000			63540	2170	52412	52462	69892;69893	69893					0.023149208661379816
VYVKHSISF	9	Unmodified	_VYVKHSISF_					0	0	0		ENSG00000185009|ENST00000355264|AP3M1;AP3M1|p.G307Rfs*5|1|0.04|ENSG00000185009|chr10:74126240-74126241|-/CT|frameshift_variant	ENSG00000185009|ENST00000355264|AP3M1	ENSG00000185009|ENST00000355264|AP3M1	MULTI-MSMS	OvCa99_classI_Rep5	1	540.29931640625	2	540.297842	1078.58113	-0.77394	-0.00041816	-0.42763	-0.00023105	-1.2016	-0.0006492	540.2974390877117	66.162	1.067	66.162	65.79	66.857	0					36	26	2	0	0	0	0.070405	2	6095	6095;6126		107.01	40.578	1	3812300			63541	8211	52413	52463	69894;69895	69894					0.04498333339938654
VYVKMIIQLD	10	Unmodified	_VYVKMIIQLD_					0	0	0		tr|A0A7D6VTS6|A0A7D6VTS6_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_18070PE=3SV=1	tr|A0A7D6VTS6|A0A7D6VTS6_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_18070PE=3SV=1	tr|A0A7D6VTS6|A0A7D6VTS6_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_18070PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	611.3502197265625	2	611.349217	1220.68388	0.023819	1.4562E-05	3.0503	0.0018648	3.0741	0.0018794	611.3510154511714	125.27	1.2863	125.03	124.66	125.95	-0.2359					68	25	4	0	0	0	0.62299	1	12203	12203		39.253	6.4404	1	393690			63542	35138	52414	52464	69896	69896					0.08236658016403453
VYVKMVRF	8	Unmodified	_VYVKMVRF_					0	0	0			REV__ENST00000545135.5_1_12:124429208-124429382:-|nuORF	REV__ENST00000545135.5_1_12:124429208-124429382:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	521.3006591796875	2	521.29933	1040.58411	-0.71732	-0.00037394	3.9303	0.0020488	3.213	0.0016749	521.3013451951931	49.755	2.2298	46.995	46.325	48.555	-2.7603					109	44	4	0	0	0	0.69415	2	3159	3159;3165		44.531	11.015	1	840970	+		63543	27409	52415	52465	69897;69898	69897					0.0654388519310487
VYVLAGAVAR	10	Unmodified	_VYVLAGAVAR_					0	0	0		ENSG00000139514|ENST00000380752|SLC7A1	ENSG00000139514|ENST00000380752|SLC7A1	ENSG00000139514|ENST00000380752|SLC7A1	MULTI-MSMS	OvCa9_classI_Rep2	2	509.80364990234375	2	509.805834	1017.59712	-0.41042	-0.00020923	-3.6368	-0.0018541	-4.0473	-0.0020633	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.81289	1	13530	13530		17.365	1.7232	1	150140			63544	4778	52416	52466	69899	69899					0.08902039576844345
VYVPHPRNTE	10	Unmodified	_VYVPHPRNTE_					0	0	0		ENSG00000108826|ENST00000225969|MRPL27	ENSG00000108826|ENST00000225969|MRPL27	ENSG00000108826|ENST00000225969|MRPL27	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3158569335938	2	606.312012	1210.60947	-0.36546	-0.00022158	3.408	0.0020663	3.0426	0.0018447	606.313846558734	100.21	4.8548	97.886	97.315	102.17	-2.3253					183	94	4	0	0	0	0.65434	1	9000	9000		35.618	1.4457	1	584000			63545	2677	52417	52467	69900	69900					0.012590312492420708
VYVQHPITF	9	Unmodified	_VYVQHPITF_					0	0	0		nc|ENSG00000189067|Q99732-3|LITAF;ENSG00000189067|ENST00000622633|LITAF;nc|ENSG00000189067|Q99732-2|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	nc|ENSG00000189067|Q99732-3|LITAF	MULTI-MSMS	OvCa99_classI_Rep5	1	552.2994384765625	2	552.297842	1102.58113	2.3737	0.001311	-0.36207	-0.00019997	2.0116	0.001111	552.297563324546	90.4	1.652	90.4	90.101	91.753	0					105	40	5	0	0	0	0.0085934	2	9676	9676;9715		176.41	88.656	1	19054000			63546	8532	52418	52468	69901;69902	69901					0.033943333399292897
VYVQNVVKL	9	Unmodified	_VYVQNVVKL_					0	0	0		nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1	nc|ENSG00000065000|O14617-4|AP3D1	nc|ENSG00000065000|O14617-4|AP3D1	MSMS	OvCa99_classI_Rep5	1	531.3226928710938	2	531.321317	1060.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.661	1	93.661	93.161	94.161	0								0	0	0	2.0518E-05	1	10168	10168		172.03	67.974	1				63547	1312	52419	52469	69903	69903					0.10019192891104467
VYVQNVVKL	9	Unmodified	_VYVQNVVKL_					0	0	0		nc|ENSG00000065000|O14617-4|AP3D1;nc|ENSG00000065000|O14617|AP3D1;ENSG00000065000|ENST00000643116|AP3D1;nc|ENSG00000065000|O14617-3|AP3D1;nc|ENSG00000065000|O14617-2|AP3D1	nc|ENSG00000065000|O14617-4|AP3D1	nc|ENSG00000065000|O14617-4|AP3D1	MSMS	OvCa99_classI_Rep5	1	531.3171997070312	2	531.321317	1060.62808	NaN	NaN	NaN	NaN	NaN	NaN	NaN	93.872	1	93.872	93.372	94.372	0								0	0	0	0.013172	1	10198	10198		138.24	42.209	1				63548	1312	52419	52469	69904	69904					0.10019192891104467
VYVSDSVSR	9	Unmodified	_VYVSDSVSR_					0	0	0			REV__Tigger4b_dup2156|chr16:29442250-29442588:-|1.197703121402909|0.4872832370944458|1.3|428.0|12|1|anti-sense	REV__Tigger4b_dup2156|chr16:29442250-29442588:-|1.197703121402909|0.4872832370944458|1.3|428.0|12|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	506.25848388671875	2	506.258914	1010.50327	-0.0082329	-4.168E-06	-0.72144	-0.00036523	-0.72967	-0.0003694	506.2584999623091	80.238	2.521	78.542	77.819	80.34	-1.6951					182	49	6	0	0	0	0.35444	1	6765	6765		56.721	1.2168	1	1626600	+		63549	29508	52420	52470	69905	69905					-0.0015572431608461557
VYVSRPSHF	9	Unmodified	_VYVSRPSHF_					0	0	0		nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF	nc|ENSG00000170581|P52630-4|STAT2	nc|ENSG00000170581|P52630-4|STAT2	MULTI-MSMS	OvCa99_classI_Rep5	1	546.2863159179688	2	546.285266	1090.55598	-0.31362	-0.00017133	-0.18658	-0.00010193	-0.5002	-0.00027325	546.2851200797325	56.323	1.8859	56.323	55.723	57.609	0					112	44	4	0	0	0	0.14855	3	4672	4644;4672;4703		85.161	26.907	1	20055000			63550	7120	52421	52471	69906;69907;69908	69907					0.0143227853739063
VYVVGTAHF	9	Unmodified	_VYVVGTAHF_					0	0	0		ENST00000463233.1_1_22:50624392-50636456:+|nuORF;nc|ENSG00000170638|Q9H4I3-2|TRABD;ENSG00000170638|ENST00000380909|TRABD	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	ENST00000463233.1_1_22:50624392-50636456:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	496.7644958496094	2	496.763635	991.512717	3.302	0.0016403	-1.5038	-0.00074706	1.7982	0.00089328	496.76291989157335	88.449	2.4469	88.449	88.13	90.577	0					133	59	3	0	0	0	0.0071229	4	9406	9382;9406;9437;9577		187.93	83.561	1	63290000			63551	7128	52422	52472	69909;69910;69911;69912	69910					0.01662088760087954
VYWFLNVTGG	10	Unmodified	_VYWFLNVTGG_					0	0	0			REV__nc|ENSG00000211782|A0A0A6YYK1|TRAV8-1	REV__nc|ENSG00000211782|A0A0A6YYK1|TRAV8-1	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2931518554688	2	578.295299	1154.57605	-7.6021	-0.0043963	-2.1936	-0.0012685	-9.7957	-0.0056648	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.71192	1	13154	13154		29.15	4.9468	1	1429200	+		63552	29114	52423	52473	69913	69913					0.004940294773177811
VYWFPIFTE	9	Unmodified	_VYWFPIFTE_					0	0	0		ENSG00000083444|ENST00000196061|PLOD1;nc|ENSG00000083444|Q02809-2|PLOD1;ENST00000491536.5_1_1:12024755-12035393:+|nuORF	ENSG00000083444|ENST00000196061|PLOD1	ENSG00000083444|ENST00000196061|PLOD1	MULTI-MSMS	OvCa99_classI_Rep5	1	601.3053588867188	2	601.30005	1200.58555	1.4821	0.00089119	2.8992	0.0017433	4.3813	0.0026345	601.30219782033	149.77	2.5731	149.77	149.4	151.97	0					182	51	8	0	0	0	0.32337	1	17582	17582		60.294	7.3573	1	11852000			63553	1691	52424	52474	69914	69914					-0.006722022371604908
VYWKIYNSI	9	Unmodified	_VYWKIYNSI_					0	0	0		ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	ENSG00000115524|ENST00000335508|SF3B1	MULTI-MSMS	OvCa99_classI_Rep5	1	593.3208618164062	2	593.318774	1184.623	1.2764	0.0007573	0.5945	0.00035273	1.8709	0.00111	593.3190897920522	109.51	1.028	109.51	109.19	110.22	0					43	22	3	0	0	0	0.014964	2	12420	12396;12420		153.04	70.285	1	3665500			63554	3103	52425	52475	69915;69916	69916					0.03806889028464866
VYYFTYHITVF	11	Unmodified	_VYYFTYHITVF_					0	0	0		ENSG00000240654|ENST00000332018|C1QTNF9;ENSG00000205863|ENST00000382137|C1QTNF9B	ENSG00000240654|ENST00000332018|C1QTNF9	ENSG00000240654|ENST00000332018|C1QTNF9	MULTI-SECPEP	OvCa9_classI_Rep2	2	484.7984924316406	3	484.911456	1451.71254	0.099026	4.8019E-05	1.1482	0.00055679	1.2473	0.00060481	484.91195874809887	97.073	1.083	96.115	95.825	96.908	-0.95857					50	21	3	0	0	0	0.026189	1	8747	8747		20.03	0.7678	1	54190			63555	9343	52426	52476	69917	69917					0.004750989171498077
VYYPVRHHL	9	Unmodified	_VYYPVRHHL_					0	0	0		TRRAP|p.L2853Nfs*14|1|0.37|ENSG00000196367|chr7:98978847-98978848|-/AA|frameshift_variant;TRRAP|p.Q3700Cfs*14|1|0.37|ENSG00000196367|chr7:99011251-99011252|-/GTGCGTTAAATCTGTCACCAGAA|frameshift_variant;nc|ENSG00000196367|Q9Y4A5-2|TRRAP;nc|ENSG00000196367|Q9Y4A5|TRRAP;ENSG00000196367|ENST00000456197|TRRAP	TRRAP|p.L2853Nfs*14|1|0.37|ENSG00000196367|chr7:98978847-98978848|-/AA|frameshift_variant	TRRAP|p.L2853Nfs*14|1|0.37|ENSG00000196367|chr7:98978847-98978848|-/AA|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	592.3236083984375	2	592.322183	1182.62981	-0.76537	-0.00045334	0.50183	0.00029724	-0.26354	-0.0001561	592.3224671718584	49.921	0.69707	49.921	49.679	50.376	0					34	15	3	0	0	0	0.14739	1	3763	3763		85.359	40.982	1	1605000			63556	8597	52427	52477	69918	69918					0.045802466996974545
WAAPLLLLL	9	Unmodified	_WAAPLLLLL_					0	0	0		IL21R|p.C109Hfs*18|1|0.33|ENSG00000103522|chr16:27437657-27437682|GAGTGTGGCAGCTTTCTCCTGGCTGA/-|frameshift_variant;IL21R|p.P220Gfs*54|1|0.15|ENSG00000103522|chr16:27444691-27444692|CC/-|frameshift_variant;ENSG00000103522|ENST00000337929|IL21R	IL21R|p.C109Hfs*18|1|0.33|ENSG00000103522|chr16:27437657-27437682|GAGTGTGGCAGCTTTCTCCTGGCTGA/-|frameshift_variant	IL21R|p.C109Hfs*18|1|0.33|ENSG00000103522|chr16:27437657-27437682|GAGTGTGGCAGCTTTCTCCTGGCTGA/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.7804260253906	2	505.325871	1008.63719	-0.55998	-0.00028297	-3.3188	-0.0016771	-3.8788	-0.00196	505.32416446672056	102.95	0.57584	100.76	100.46	101.04	-2.1994					21	10	3	0	0	0	0.027462	1	9287	9287		39.021	9.18	1	23411			63557	2324	52428	52478	69919	69919					0.13321586247445794
WAEWETPI	8	Unmodified	_WAEWETPI_					0	0	0			REV__ENSG00000164182|ENST00000296597|NDUFAF2	REV__ENSG00000164182|ENST00000296597|NDUFAF2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.272216796875	2	516.245275	1030.476	0.062592	3.2313E-05	-1.5037	-0.00077628	-1.4411	-0.00074397	516.2445319304288	60.532	0.5468	57.102	56.848	57.395	-3.43					17	10	2	0	0	0	0.028476	1	4079	4079		20.482	10.217	1	21711	+		63558	20957	52429	52479	69920	69920					-0.03802207856460882
WAFLHCCGQ	9	Unmodified	_WAFLHCCGQ_					0	0	0			REV__nc|ENSG00000013619|Q13495-4|MAMLD1	REV__nc|ENSG00000013619|Q13495-4|MAMLD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.7874755859375	2	532.725672	1063.43679	-0.21061	-0.0001122	-4.2207	-0.0022485	-4.4313	-0.0023607	532.7232785217826	71.329	0.55965	71.329	71.109	71.668	0					21	13	2	0	0	0	0.027462	1	6900	6900		18.324	0	1	984790	+		63559	16511	52430	52480	69921	69921					-0.09238954683360134
WAGGGGLVM	9	Unmodified	_WAGGGGLVM_					0	0	0		HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|82|1|anti-sense	HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|82|1|anti-sense	HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|82|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	424.2028503417969	2	424.210181	846.405809	-0.84451	-0.00035825	3.0936	0.0013124	2.2491	0.00095411	424.2114071960132	55.57	0.40552	52.276	52.11	52.516	-3.2944					12	7	2	0	0	0	0.027462	1	3533	3533		21.702	2.5988	1	20342			63560	14413	52431	52481	69922	69922					-0.023537847259376576
WAGGGGLVM	9	Unmodified	_WAGGGGLVM_					0	0	0		HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|82|1|anti-sense	HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|82|1|anti-sense	HERVH-int_dup1805|chr4:134680244-134683143:-|1.6874641175724838|0.0814635120779963|4.37|415.0|82|1|anti-sense	MULTI-MATCH	OvCa99_classI_Rep5	1		2	424.210181	846.405809	-0.3601	-0.00015276	0.43902	0.00018624	0.078923	3.348E-05	424.2105969066804	52.078	0.76179	52.078	51.585	52.347	0	-0.099097	-0.0014324	NaN	14.664	19	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	160820			63561	14413	52431	52481							-0.023537847259376576
WAHHRTGTTG	10	Unmodified	_WAHHRTGTTG_					0	0	0			REV__nc|ENSG00000170379|A6NFQ2-3|TCAF2	REV__nc|ENSG00000170379|A6NFQ2-3|TCAF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.8475952148438	2	562.273221	1122.53189	1.4056	0.00079035	-2.7935	-0.0015707	-1.3878	-0.00078034	562.2713020406487	157.77	0.7001	157.77	157.45	158.15	0					29	13	3	0	0	0	0.026931	1	18482	18482		30.318	7.2752	1	115320	+		63562	29001	52432	52482	69923	69923					-0.024475618962924273
WAIQVIVAII	10	Unmodified	_WAIQVIVAII_					0	0	0		nc|ENSG00000107147|Q5JUK3-4|KCNT1;nc|ENSG00000107147|Q5JUK3|KCNT1;ENSG00000107147|ENST00000371757|KCNT1;nc|ENSG00000107147|Q5JUK3-2|KCNT1	nc|ENSG00000107147|Q5JUK3-4|KCNT1	nc|ENSG00000107147|Q5JUK3-4|KCNT1	MULTI-MSMS	OvCa9_classI_Rep3	3	563.3534545898438	2	563.35516	1124.69577	-1.0854	-0.00061147	-3.2928	-0.001855	-4.3782	-0.0024665	563.3535121729102	117.2	1.8826	116.17	115.84	117.73	-1.0324					63	37	2	0	0	0	0.58282	1	8869	8869		44.117	6.6086	1	2467900			63563	2589	52433	52483	69924	69924					0.13840642821901383
WAIVELIVI	9	Unmodified	_WAIVELIVI_					0	0	0			REV__tr|A0A7D7A2W1|A0A7D7A2W1_9CLOTPhagetailtapemeasureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19185PE=4SV=1	REV__tr|A0A7D7A2W1|A0A7D7A2W1_9CLOTPhagetailtapemeasureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19185PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	528.3317260742188	2	528.328611	1054.64267	-0.30278	-0.00015997	1.0003	0.00052851	0.69756	0.00036854	528.3289725579709	51.11	0.7249	51.11	50.819	51.544	0					39	16	4	0	0	0	0.65476	1	3917	3917		25.45	1.2474	1	1754900	+		63564	32555	52434	52484	69925	69925					0.11753265039237704
WALMLLLPES	10	Unmodified	_WALMLLLPES_					0	0	0		ENST00000506025.1_2_5:176922079-176930550:+|nuORF	ENST00000506025.1_2_5:176922079-176930550:+|nuORF	ENST00000506025.1_2_5:176922079-176930550:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.8240966796875	2	586.822835	1171.63112	-2.8595	-0.001678	4.319	0.0025345	1.4596	0.0008565	586.8252260558515	149.49	1.5706	148.05	147.61	149.18	-1.4344					87	31	4	0	0	0	0.58282	1	14730	14730		44.117	1.2525	1	272440			63565	12902	52435	52485	69926	69926					0.05216699953598436
WALRLDLP	8	Unmodified	_WALRLDLP_					0	0	0			REV__ENSG00000188177|ENST00000409871|ZC3H6	REV__ENSG00000188177|ENST00000409871|ZC3H6	MULTI-MSMS	OvCa9_classI_Rep2	2	492.2848815917969	2	492.287277	982.560001	-2.3423	-0.0011531	-1.542	-0.00075913	-3.8844	-0.0019122	492.28641322443195	149.16	1.1047	148.94	148.52	149.62	-0.22696					49	21	3	0	0	0	0.75915	1	15102	15102		20.482	1.1219	1	83456	+		63566	22698	52436	52486	69927	69927					0.06802368031083006
WALSLHFSPD	10	Unmodified	_WALSLHFSPD_					0	0	0			REV__ENSG00000103005|ENST00000219281|USB1	REV__ENSG00000103005|ENST00000219281|USB1	MULTI-MSMS	OvCa9_classI_Rep2	2	586.7874145507812	2	586.790381	1171.56621	-1.8442	-0.0010822	-2.1449	-0.0012586	-3.9891	-0.0023408	586.7890662323969	62.07	2.0506	59.311	58.777	60.827	-2.7593					109	39	4	0	0	0	0.58282	1	4651	4651		44.117	3.0367	1	690190	+		63567	17587	52437	52487	69928	69928					-0.01271158528061278
WALVFLIVA	9	Unmodified	_WALVFLIVA_					0	0	0			REV__tr|A0A7D6ZHS4|A0A7D6ZHS4_9CLOTAmmoniumtransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_00655PE=3SV=1	REV__tr|A0A7D6ZHS4|A0A7D6ZHS4_9CLOTAmmoniumtransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_00655PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	516.314208984375	2	516.318046	1030.62154	-5.3969	-0.0027865	-2.4808	-0.0012809	-7.8778	-0.0040674	516.3166994253895	156.49	2.0589	155.32	154.75	156.81	-1.1707					101	49	4	0	0	0	0.68641	1	13463	13463		21.702	0	1	710990	+		63568	32035	52438	52488	69929	69929					0.10745299730388069
WALWGSSEP	9	Unmodified	_WALWGSSEP_					0	0	0			REV__ENST00000539112.5_1_15:102194787-102197157:-|nuORF	REV__ENST00000539112.5_1_15:102194787-102197157:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.3197021484375	2	516.742899	1031.47125	0.72675	0.00037555	-1.7136	-0.0008855	-0.98686	-0.00050995	516.7420137040449	112.23	0.74031	112.11	111.83	112.57	-0.12174					19	14	2	0	0	0	0.027441	1	10666	10666		21.96	0	1	12982	+		63569	27333	52439	52489	69930	69930					-0.0432309199923111
WAMDLRPEL	9	Unmodified	_WAMDLRPEL_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MSMS	OvCa9_classI_Rep3	3	565.7887573242188	2	565.786784	1129.55902	-0.7707	-0.00043605	2.86	0.0016182	2.0893	0.0011821	565.7883795547209	95.127	2.1472	93.231	92.561	94.709	-1.8956					107	42	3	0	0	0	0.18193	1	6181	6181		79.451	2.1334	1	776060			63570	2309	52440	52490	69931	69931					-0.0005821440013278334
WAMDLRPEL	9	Unmodified	_WAMDLRPEL_					0	0	0		ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	ENSG00000103335|ENST00000301015|PIEZO1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	565.786784	1129.55902	1.9167	0.0010845	0.74128	0.0004194	2.658	0.0015039	565.7869231373945	93.257	0.21176	93.257	93.093	93.305	0	0.001015	-0.0017244	NaN	79.451	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	306650			63571	2309	52440	52490							-0.0005821440013278334
WAMISAKLG	9	Unmodified	_WAMISAKLG_					0	0	0			REV__tr|A0A7D6ZGE4|A0A7D6ZGE4_9CLOTHomocitratesynthaseOS=ClostridiumintestinaleOX=36845GN=nifVPE=3SV=1	REV__tr|A0A7D6ZGE4|A0A7D6ZGE4_9CLOTHomocitratesynthaseOS=ClostridiumintestinaleOX=36845GN=nifVPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	488.7702941894531	2	488.767863	975.521173	1.2932	0.0006321	2.4986	0.0012212	3.7919	0.0018533	488.768982247457	29.946	0.5435	27.236	27.113	27.656	-2.7097					14	10	2	0	0	0	0.71475	1	792	792		12.959	0	1	33067	+		63572	31996	52441	52491	69932	69932					0.03243319405055445
WANRLTSL	8	Unmodified	_WANRLTSL_					0	0	0			REV__tr|A0A7D7A3D0|A0A7D7A3D0_9CLOTProteintranslocasesubunitSecYOS=ClostridiumintestinaleOX=36845GN=secYPE=3SV=1	REV__tr|A0A7D7A3D0|A0A7D7A3D0_9CLOTProteintranslocasesubunitSecYOS=ClostridiumintestinaleOX=36845GN=secYPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.76849365234375	2	480.766709	959.518865	-0.97225	-0.00046743	0.49361	0.00023731	-0.47864	-0.00023011	480.76685826741743	54.507	1.0255	51.259	50.927	51.953	-3.2474					37	19	2	0	0	0	0.39692	1	3405	3405		88.643	9.1918	1	768700	+		63573	32580	52442	52492	69933	69933					0.03748606991609904
WAPALRRHCV	10	Unmodified	_WAPALRRHCV_					0	0	0			REV__nc|ENSG00000243543|Q9BQY6|WFDC6	REV__nc|ENSG00000243543|Q9BQY6|WFDC6	MULTI-SECPEP	OvCa99_classI_Rep5	1	604.7921752929688	2	604.827109	1207.63967	2.6528	0.0016045	-0.96755	-0.0005852	1.6852	0.0010193	605.328001083967	121.12	0.32584	121.12	120.97	121.29	0					13	7	2	0	0	0	0.026822	1	13919	13919		38.806	32.493	1	117890	+		63574	29159	52443	52493	69934	69934					0.04415111433445418
WAPKPYHKF	9	Unmodified	_WAPKPYHKF_					0	0	0		nc|ENSG00000071054|O95819-4|MAP4K4;nc|ENSG00000071054|O95819-2|MAP4K4;nc|ENSG00000071054|O95819|MAP4K4;nc|ENSG00000071054|O95819-5|MAP4K4;nc|ENSG00000071054|O95819-6|MAP4K4;nc|ENSG00000071054|O95819-3|MAP4K4;ENSG00000071054|ENST00000324219|MAP4K4;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;ENST00000484051.5_1_3:170784284-170800202:-|nuORF;nc|ENSG00000154310|Q9UKE5-8|TNIK;nc|ENSG00000154310|Q9UKE5-5|TNIK;nc|ENSG00000154310|Q9UKE5-7|TNIK;nc|ENSG00000154310|Q9UKE5-3|TNIK;nc|ENSG00000154310|Q9UKE5-6|TNIK;nc|ENSG00000154310|Q9UKE5-2|TNIK;nc|ENSG00000154310|Q9UKE5-4|TNIK;ENSG00000154310|ENST00000436636|TNIK;nc|ENSG00000141503|Q8N4C8-3|MINK1;nc|ENSG00000141503|Q8N4C8-5|MINK1;nc|ENSG00000141503|Q8N4C8-2|MINK1;nc|ENSG00000141503|Q8N4C8-4|MINK1;ENSG00000141503|ENST00000355280|MINK1	nc|ENSG00000071054|O95819-4|MAP4K4;ENST00000459881.1_1_3:170784284-170789158:-|nuORF;nc|ENSG00000141503|Q8N4C8-3|MINK1	nc|ENSG00000071054|O95819-4|MAP4K4	MULTI-MSMS	OvCa99_classI_Rep5	1	587.3162841796875	2	587.313826	1172.6131	-0.54643	-0.00032092	0.37828	0.00022217	-0.16815	-9.8756E-05	587.3138521767048	55.567	0.77914	55.567	55.315	56.094	0					55	18	4	0	0	0	0.38529	1	4565	4565		53.351	6.8947	1	1949400			63575	1444;15064;5729	52444	52494	69935	69935					0.033697458137112335
WARATHLVE	9	Unmodified	_WARATHLVE_					0	0	0		ESPL1|p.G999Afs*12|1|0.05|ENSG00000135476|chr12:53283456-53283457|-/CCTCTCACACTCCCTGT|frameshift_variant;nc|ENSG00000135476|Q14674-2|ESPL1;ENSG00000135476|ENST00000257934|ESPL1	ESPL1|p.G999Afs*12|1|0.05|ENSG00000135476|chr12:53283456-53283457|-/CCTCTCACACTCCCTGT|frameshift_variant	ESPL1|p.G999Afs*12|1|0.05|ENSG00000135476|chr12:53283456-53283457|-/CCTCTCACACTCCCTGT|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.3052978515625	2	541.790715	1081.56688	0.48528	0.00026292	-2.6916	-0.0014583	-2.2063	-0.0011953	541.7904597836266	74.154	0.53355	74.154	73.907	74.441	0					15	13	2	0	0	0	0.02744	1	7338	7338		44.377	11.565	1	535620			63576	4383	52445	52495	69936	69936					0.029356809116507065
WARAYKQL	8	Unmodified	_WARAYKQL_					0	0	0			REV__ENSG00000128833|ENST00000261839|MYO5C	REV__ENSG00000128833|ENST00000261839|MYO5C	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.3809204101562	2	518.290351	1034.56615	0.53889	0.0002793	0.10683	5.5369E-05	0.64572	0.00033467	518.2905019838196	157.49	1.1067	157.49	156.75	157.85	0					32	21	3	0	0	0	0.028476	1	18389	18389		42.474	8.9589	1	49269	+		63577	18872	52446	52496	69937	69937					0.05024886262594919
WARKRLVW	8	Unmodified	_WARKRLVW_					0	0	0			REV__ENST00000564578.5_1_16:75670441-75675529:-|nuORF	REV__ENST00000564578.5_1_16:75670441-75675529:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	557.8305053710938	2	557.83526	1113.65597	-5.3847	-0.0030038	-1.7425	-0.000972	-7.1272	-0.0039758	557.8340443185826	159.37	0.89273	157.79	157.47	158.36	-1.5858					38	20	3	0	0	0	0.75915	1	15713	15713		20.482	3.1169	1	65515	+		63578	24259	52447	52497	69938	69938					0.10368560661822812
WARLAAVL	8	Unmodified	_WARLAAVL_					0	0	0			REV__ENSG00000229972|ENST00000440739|IQCF3	REV__ENSG00000229972|ENST00000440739|IQCF3	MULTI-MSMS	OvCa9_classI_Rep3	3	450.2742614746094	2	450.276712	898.538872	-3.7498	-0.0016884	-0.89868	-0.00040465	-4.6485	-0.0020931	450.27623858459356	147.83	1.7988	146.88	146.5	148.3	-0.95119					100	35	5	0	0	0	0.75915	1	12488	12488		20.482	0	1	751980	+		63579	23379	52448	52498	69939	69939					0.08554402722199939
WASGKSPRLT	10	Unmodified	_WASGKSPRLT_					0	0	0		ENST00000591661.1_1_18:47801613-47802282:-|nuORF	ENST00000591661.1_1_18:47801613-47802282:-|nuORF	ENST00000591661.1_1_18:47801613-47802282:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3358154296875	2	551.803823	1101.59309	1.3625	0.00075185	-3.1831	-0.0017564	-1.8205	-0.0010046	551.802012296221	130.46	1.0008	130.46	129.72	130.72	0					21	20	2	0	0	0	0.026994	1	15094	15094		25.574	0	1	86626			63580	14123	52449	52499	69940	69940					0.046359500831158584
WATGSQRPP	9	Unmodified	_WATGSQRPP_					0	0	0		ENST00000534336.1_1_11:65265625-65265937:+|nuORF	ENST00000534336.1_1_11:65265625-65265937:+|nuORF	ENST00000534336.1_1_11:65265625-65265937:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.3243408203125	2	500.253966	998.493378	-0.25912	-0.00012963	3.3788	0.0016902	3.1197	0.0015606	500.2553896078305	52.427	0.3067	52.427	52.259	52.566	0					9	6	2	0	0	0	0.027462	1	4108	4108		23.042	0	1	123160			63581	13354	52450	52500	69941	69941					-0.005928675308155107
WAVIWRKL	8	Unmodified	_WAVIWRKL_					0	0	0		ENSG00000147459|ENST00000276440|DOCK5;nc|ENSG00000147459|Q9H7D0-2|DOCK5;DOCK5|p.A389Dfs*5|1|0.03|ENSG00000147459|chr8:25308898-25308899|-/AT|frameshift_variant	ENSG00000147459|ENST00000276440|DOCK5	ENSG00000147459|ENST00000276440|DOCK5	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.827392578125	2	536.326737	1070.63892	2.1881	0.0011735	-0.24261	-0.00013012	1.9455	0.0010434	536.8269565826089	77.149	0.58176	77.149	76.841	77.422	0					27	13	4	0	0	0	0.028476	1	7784	7784		14.664	0.88877	1	1140100			63582	5360	52451	52501	69942	69942					0.10642640056016717
WCCQHTPLK	9	Unmodified	_WCCQHTPLK_					0	0	0		ENST00000436530.1_1_14:54080561-54080735:-|nuORF	ENST00000436530.1_1_14:54080561-54080735:-|nuORF	ENST00000436530.1_1_14:54080561-54080735:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.2931518554688	2	558.259879	1114.50521	2.2257	0.0012425	-1.2608	-0.00070386	0.96488	0.00053866	558.258980708844	134.59	0.47557	134.59	134.34	134.81	0					16	10	2	0	0	0	0.027462	1	15687	15687		38.806	0	1	285280			63583	11877	52452	52502	69943	69943					-0.047467101034953885
WCFDMNPLIT	10	Unmodified	_WCFDMNPLIT_					0	0	0			REV__tr|A0A7D6VVB4|A0A7D6VVB4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10125PE=4SV=1	REV__tr|A0A7D6VVB4|A0A7D6VVB4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10125PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	620.2823486328125	2	620.280477	1238.5464	3.8884	0.0024119	0.96776	0.00060028	4.8562	0.0030122	620.2809544212865	132.27	0.90417	130.77	130.48	131.39	-1.5015					38	17	3	0	0	0	0.70152	1	12747	12747		30.318	2.2362	1	65414	+		63584	31712	52453	52503	69944	69944					-0.06332993854698543
WCFVLRRLWF	10	Unmodified	_WCFVLRRLWF_					0	0	0		ENST00000535622.5_1_22:32174140-32179938:+|nuORF	ENST00000535622.5_1_22:32174140-32179938:+|nuORF	ENST00000535622.5_1_22:32174140-32179938:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.92431640625	3	475.925265	1424.75397	0.22423	0.00010671	-3.4822	-0.0016573	-3.258	-0.0015506	475.9235414221273	20.474	1.4677	19.136	18.803	20.27	-1.3386					73	29	5	0	0	0	0.81208	1	64	64		17.468	1.5474	1	385230			63585	13380	52454	52504	69945	69945					0.05858001195520046
WCLQKLVSM	9	Unmodified	_WCLQKLVSM_					0	0	0			REV__ENST00000420557.2_1_6:170195286-170195361:+|nuORF	REV__ENST00000420557.2_1_6:170195286-170195361:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.3331909179688	2	554.288105	1106.56166	0.9383	0.00052009	3.9975	0.0022157	4.9358	0.0027358	554.2907698068121	157.76	0.51019	157.76	157.5	158.01	0					15	9	2	0	0	0	0.027462	1	18500	18500		16.473	0	1	116910	+		63586	25593	52455	52505	69946	69946					0.01263917733172093
WCRRQTRRRRW	11	Unmodified	_WCRRQTRRRRW_					0	0	0			REV__ENST00000447310.5_1_19:58067715-58071064:-|nuORF	REV__ENST00000447310.5_1_19:58067715-58071064:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.5633544921875	4	415.730101	1658.8913	0.55223	0.00022958	-3.8775	-0.001612	-3.3253	-0.0013824	415.97932043927784	33.235	0.34569	33.235	33.039	33.384	0					10	6	2	0	0	0	0.026559	1	1529	1529		0.37141	0	1	52654	+		63587	25915	52456	52506	69947	69947					0.08820722847622164
WCRRQTRRRRW	11	Unmodified	_WCRRQTRRRRW_					0	0	0			REV__ENST00000447310.5_1_19:58067715-58071064:-|nuORF	REV__ENST00000447310.5_1_19:58067715-58071064:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.3237915039062	3	553.971042	1658.8913	-0.46413	-0.00025711	-2.6869	-0.0014885	-3.1511	-0.0017456	553.9683590612835	51.322	0.45244	48.149	47.821	48.274	-3.1734					10	8	2	0	0	0	0.026549	1	3008	3008		3.6191	3.6191	1	14688	+		63588	25915	52456	52506	69948	69948					0.08820722847622164
WCSTSASMTLL	11	Unmodified	_WCSTSASMTLL_					0	0	0		ENST00000480353.5_1_9:130549866-130550303:+|nuORF	ENST00000480353.5_1_9:130549866-130550303:+|nuORF	ENST00000480353.5_1_9:130549866-130550303:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	600.2723388671875	2	600.275392	1198.53623	-5.4284	-0.0032585	-0.13736	-8.2452E-05	-5.5658	-0.003341	600.275203760979	160.29	1.5488	160.06	159.78	161.33	-0.22697					74	31	3	0	0	0	0.72459	1	16295	16295		20.947	2.6848	1	65724			63589	12525	52457	52507	69949	69949					-0.0550960157991085
WCWVNYLL	8	Unmodified	_WCWVNYLL_					0	0	0		nc|ENSG00000179397|Q5SY80-3|CATSPERE;nc|ENSG00000179397|Q5SY80-2|CATSPERE;ENSG00000179397|ENST00000366534|CATSPERE	nc|ENSG00000179397|Q5SY80-3|CATSPERE	nc|ENSG00000179397|Q5SY80-3|CATSPERE	MULTI-MSMS	OvCa99_classI_Rep5	1	548.77099609375	2	548.767863	1095.52117	1.9945	0.0010945	2.122	0.0011645	4.1165	0.002259	548.7688961985147	137.08	0.81824	137.08	136.77	137.59	0					34	15	3	0	0	0	0.64377	1	16009	16009		54.765	5.3231	1	290770			63590	7820	52458	52508	69950	69950					-0.022766805949459012
WDEGLQVALP	10	Unmodified	_WDEGLQVALP_					0	0	0			REV__ENST00000266058.8_1_10:98781017-98781140:-|nuORF	REV__ENST00000266058.8_1_10:98781017-98781140:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.2959594726562	2	564.290214	1126.56587	1.3401	0.00075618	-1.3586	-0.00076665	-0.018545	-1.0465E-05	564.7918370287582	142.41	0.74702	142.41	142.14	142.88	0					25	14	2	0	0	0	0.026782	1	16616	16616		54.776	7.119	1	32485	+		63591	24040	52459	52509	69951	69951					0.007654217520894235
WDFHCTPQ	8	Unmodified	_WDFHCTPQ_					0	0	0		ENST00000382073.3_1_12:8610503-8612214:+|nuORF	ENST00000382073.3_1_12:8610503-8612214:+|nuORF	ENST00000382073.3_1_12:8610503-8612214:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.2510986328125	2	517.213452	1032.41235	2.2683	0.0011732	0.30832	0.00015947	2.5766	0.0013327	517.21331207755	75.618	0.54848	75.618	75.407	75.956	0					16	13	2	0	0	0	0.028476	1	7510	7510		30.504	8.5438	1	352800			63592	11175	52460	52510	69952	69952					-0.10255891565225284
WDGVAPYSER	10	Unmodified	_WDGVAPYSER_					0	0	0			REV__tr|A0A7D6W0D5|A0A7D6W0D5_9CLOTSmallribosomalsubunitbiogenesisGTPaseRsgAOS=ClostridiumintestinaleOX=36845GN=rsgAPE=3SV=1	REV__tr|A0A7D6W0D5|A0A7D6W0D5_9CLOTSmallribosomalsubunitbiogenesisGTPaseRsgAOS=ClostridiumintestinaleOX=36845GN=rsgAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	590.2664794921875	2	590.275095	1178.53564	-6.4648	-0.003816	-4.355	-0.0025706	-10.82	-0.0063866	590.272448811586	160.41	2.659	158.8	158.24	160.9	-1.6101					174	63	4	0	0	0	0.58067	1	15813	15813		44.377	3.8046	1	264810	+		63593	31854	52461	52511	69953	69953					-0.04648936913099533
WDIAQPQQGI	10	Unmodified	_WDIAQPQQGI_					0	0	0			REV__ENSG00000283434|ENST00000637986|CSNKA2IP	REV__ENSG00000283434|ENST00000637986|CSNKA2IP	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2902221679688	2	578.293288	1154.57202	-7.6021	-0.0043963	1.2846	0.00074285	-6.3176	-0.0036534	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.67931	1	13429	13429		32.812	9.2897	1	1429200	+		63594	23663	52462	52512	69954	69954					0.0009193998362206912
WDLPRRLE	8	Unmodified	_WDLPRRLE_					0	0	0		ENST00000290079.8_1_9:139687350-139687656:+|nuORF	ENST00000290079.8_1_9:139687350-139687656:+|nuORF	ENST00000290079.8_1_9:139687350-139687656:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	542.7971801757812	2	542.79854	1083.58253	-2.2011	-0.0011947	-0.1673	-9.0808E-05	-2.3684	-0.0012856	542.7983627511975	142.92	1.1361	142.69	142.21	143.35	-0.22697					52	22	3	0	0	0	0.74229	1	14356	14356		30.504	5.0535	1	87156			63595	10087	52463	52513	69955	69955					0.04407967428710435
WDLRKGEKILI	11	Unmodified	_WDLRKGEKILI_					0	0	0		WDR3|p.R930Gfs*9|1|0.09|ENSG00000065183|chr1:117959402-117959402|G/-|frameshift_variant;ENSG00000065183|ENST00000349139|WDR3	WDR3|p.R930Gfs*9|1|0.09|ENSG00000065183|chr1:117959402-117959402|G/-|frameshift_variant	WDR3|p.R930Gfs*9|1|0.09|ENSG00000065183|chr1:117959402-117959402|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	457.6080017089844	3	457.61	1369.80817	-3.2547	-0.0014894	-1.3705	-0.00062716	-4.6252	-0.0021166	457.60942916936364	154.63	1.9214	154.4	153.61	155.53	-0.22696					87	47	3	0	0	0	0.72477	1	15746	15746		18.531	1.3643	1	20922			63596	1317	52464	52514	69956	69956					0.13805871828094496
WDPLVDHPI	9	Unmodified	_WDPLVDHPI_					0	0	0			REV__ENSG00000006831|ENST00000357103|ADIPOR2	REV__ENSG00000006831|ENST00000357103|ADIPOR2	MULTI-MSMS	OvCa99_classI_Rep5	1	546.2796020507812	2	546.279649	1090.54475	2.4235	0.0013239	-0.2809	-0.00015345	2.1427	0.0011705	546.2795422248342	96.06	1.9895	96.06	95.577	97.566	0					105	46	4	0	0	0	0.46377	1	10591	10591		45.952	1.8352	1	10374000	+		63597	16426	52465	52515	69957	69957					0.003094564432331026
WDQDKISWAQP	11	Unmodified	_WDQDKISWAQP_					0	0	0		ENST00000558048.5_1_15:65676349-65677832:-|nuORF	ENST00000558048.5_1_15:65676349-65677832:-|nuORF	ENST00000558048.5_1_15:65676349-65677832:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	459.25604248046875	3	458.554331	1372.64116	0.0054015	2.4769E-06	-3.1124	-0.0014272	-3.107	-0.0014247	458.88794522961155	57.152	0.35636	53.807	53.679	54.035	-3.3449					11	6	3	0	0	0	0.025988	1	3718	3718		25.892	8.725	1	11396			63598	13692	52466	52516	69958	69958					-0.030250207874814805
WDSTLYSGLDE	11	Unmodified	_WDSTLYSGLDE_					0	0	0		nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	nc|ENSG00000213676|Q99941-2|ATF6B	MULTI-MSMS	OvCa9_classI_Rep3	3	643.28271484375	2	643.282783	1284.55101	-0.66256	-0.00042621	0.80067	0.00051506	0.13811	8.8846E-05	643.2832187137278	117.89	1.0901	116.86	116.59	117.68	-1.0324					61	21	4	0	0	0	0.69081	1	8876	8876		32.812	0	1	118160			63599	15307	52467	52517	69959	69959					-0.0798811490656135
WDSVLPPENI	10	Unmodified	_WDSVLPPENI_					0	0	0		ENSG00000132703|ENST00000255040|APCS	ENSG00000132703|ENST00000255040|APCS	ENSG00000132703|ENST00000255040|APCS	MULTI-MSMS	OvCa9_classI_Rep3	3	585.2941284179688	2	585.295496	1168.57644	-0.46869	-0.00027432	-2.1813	-0.0012767	-2.65	-0.001551	585.2946417189139	113.45	1.0333	112.38	112.1	113.13	-1.0753					31	19	2	0	0	0	0.5675	1	8341	8341		45.972	1.8554	1	130150			63600	4166	52468	52518	69960	69960					-0.001105955934690428
WDVAANHLQL	10	Unmodified	_WDVAANHLQL_					0	0	0			REV__UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	REV__UBR4|p.K4685Nfs*13|1|0.19|ENSG00000127481|chr1:19093369-19093370|-/GTGTGTGCTCGGG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8021850585938	2	583.80128	1165.58801	0.97841	0.0005712	1.9394	0.0011322	2.9178	0.0017034	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.7759	1	1312	1312		21.96	0	1	155970	+		63601	18816	52469	52519	69961	69961					0.011836462205110365
WDWRTDRPRRG	11	Unmodified	_WDWRTDRPRRG_					0	0	0		ENST00000493940.2_1_1:22177888-22181121:-|nuORF	ENST00000493940.2_1_1:22177888-22181121:-|nuORF	ENST00000493940.2_1_1:22177888-22181121:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	501.30322265625	3	500.923752	1499.74943	-0.4309	-0.00021585	-4.4589	-0.0022336	-4.8898	-0.0024494	501.2561978276136	44.915	0.79642	42.205	42	42.797	-2.7097					26	15	2	0	0	0	0.026033	1	2627	2627		22.562	20.028	1	20017			63602	12746	52470	52520	69962	69962					0.019542083062560778
WDYDTPIEE	9	Unmodified	_WDYDTPIEE_					0	0	0		tr|A0A553SF48|A0A553SF48_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_08245PE=4SV=1	tr|A0A553SF48|A0A553SF48_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_08245PE=4SV=1	tr|A0A553SF48|A0A553SF48_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_08245PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.3071899414062	2	584.245669	1166.47678	0.55352	0.00032339	-2.8487	-0.0016643	-2.2951	-0.0013409	584.24388633653	81.108	0.25159	81.108	80.91	81.162	0					8	5	2	0	0	0	0.027462	1	8332	8332		38.806	16.846	1	125150			63603	32990	52471	52521	69963	69963					-0.099794579980653
WEALAKLSL	9	Unmodified	_WEALAKLSL_					0	0	0		ENST00000461446.1_1_22:32914234-32925055:-|nuORF	ENST00000461446.1_1_22:32914234-32925055:-|nuORF	ENST00000461446.1_1_22:32914234-32925055:-|nuORF	MSMS	OvCa9_classI_Rep2	2	515.7977905273438	2	515.800217	1029.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	62.663	1	59.918	59.418	60.418	-2.7444								0	0	0	0.17776	1	4711	4711		37.812	2.1932	1				63604	12180	52472	52522	69964	69964					0.07227217482704873
WEAQEPIQM	9	Unmodified	_WEAQEPIQM_					0	0	0		ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	ENSG00000231389|ENST00000419277|HLA-DPA1	MULTI-MSMS	OvCa99_classI_Rep5	1	566.26220703125	2	566.260599	1130.50665	1.5084	0.00085417	0.43352	0.00024548	1.942	0.0010997	566.2607489619623	109.39	1.6951	109.39	109.06	110.76	0					86	37	3	0	0	0	0.033166	2	12388	12388;12413		132.76	53.307	1	12042000			63605	9288	52473	52523	69965;69966	69965					-0.05338797533750039
WEASPGLPDL	10	Unmodified	_WEASPGLPDL_					0	0	0		ENST00000323443.6_1_15:42840863-42840944:-|nuORF	ENST00000323443.6_1_15:42840863-42840944:-|nuORF	ENST00000323443.6_1_15:42840863-42840944:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	542.333251953125	2	542.769114	1083.52368	-0.755	-0.00040979	0.83336	0.00045232	0.078357	4.253E-05	542.7695354280823	122.54	0.69104	122.32	122.12	122.81	-0.21803					22	13	2	0	0	0	0.026956	1	11910	11910		34.173	3.6689	1	25134			63606	10390	52474	52524	69967	69967					-0.014745536562713824
WEDGRSTLL	9	Unmodified	_WEDGRSTLL_					0	0	0		nc|ENSG00000157613|Q96BA8-2|CREB3L1;ENSG00000157613|ENST00000621158|CREB3L1	nc|ENSG00000157613|Q96BA8-2|CREB3L1	nc|ENSG00000157613|Q96BA8-2|CREB3L1	MULTI-MSMS	OvCa99_classI_Rep5	1	538.7733154296875	2	538.772188	1075.52982	2.202	0.0011864	0.40203	0.0002166	2.604	0.001403	538.7721874953581	85.977	1.177	85.977	85.624	86.801	0					50	28	3	0	0	0	0.1804	1	9043	9043		79.713	0	1	2991500			63607	5905	52475	52525	69968	69968					-0.004920354247587966
WEDRARRERRR	11	Unmodified	_WEDRARRERRR_					0	0	0			REV__ENST00000347519.10_1_14:24681010-24682688:-|nuORF	REV__ENST00000347519.10_1_14:24681010-24682688:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	529.2896728515625	3	529.289205	1584.84579	-0.25113	-0.00013292	0.4818	0.00025501	0.23067	0.00012209	529.2893365750821	47.271	0.91258	47.271	46.985	47.897	0					64	20	5	0	0	0	0.72069	1	3383	3383		22.562	13.762	1	3366800	+		63608	24701	52476	52526	69969	69969					0.0767577586623247
WEDRARRERRR	11	Unmodified	_WEDRARRERRR_					0	0	0			REV__ENST00000347519.10_1_14:24681010-24682688:-|nuORF	REV__ENST00000347519.10_1_14:24681010-24682688:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.7930908203125	3	529.289205	1584.84579	-0.25113	-0.00013292	0.4818	0.00025501	0.23067	0.00012209	529.2893365750821	47.271	0.91258	47.271	46.985	47.897	0					64	20	5	0	0	0	0.026482	1	3366	3366		11.932	3.5251	1	3366800	+		63609	24701	52476	52526	69970	69970					0.0767577586623247
WEDYPHVHL	9	Unmodified	_WEDYPHVHL_					0	0	0		ENSG00000065308|ENST00000182527|TRAM2	ENSG00000065308|ENST00000182527|TRAM2	ENSG00000065308|ENST00000182527|TRAM2	MULTI-MSMS	OvCa99_classI_Rep5	1	598.2836303710938	2	598.28018	1194.54581	3.5584	0.0021289	-1.3677	-0.00081827	2.1907	0.0013107	598.2793509917651	88.508	0.82771	88.508	88.255	89.082	0					42	19	5	0	0	0	0.14739	1	9412	9412		85.359	30.583	1	1559800			63610	1320	52477	52527	69971	69971					-0.043683291878551245
WEEAAHDL	8	Unmodified	_WEEAAHDL_					0	0	0		ENSG00000100380|ENST00000216218|ST13;nc|ENSG00000212789|Q8NFI4|ST13P5;nc|ENSG00000232150|Q8IZP2|ST13P4	ENSG00000100380|ENST00000216218|ST13	ENSG00000100380|ENST00000216218|ST13	MULTI-MSMS	OvCa99_classI_Rep5	1	485.7181701660156	2	485.716882	969.41921	-0.12989	-6.3089E-05	0.78727	0.00038239	0.65738	0.0003193	485.7170884632679	67.498	0.97952	67.498	67.212	68.192	0					55	24	3	0	0	0	0.42208	1	6312	6312		85.359	0	1	3444500			63611	2059	52478	52528	69972	69972					-0.06672255413013772
WEEAAHDL	8	Unmodified	_WEEAAHDL_					0	0	0		ENSG00000100380|ENST00000216218|ST13;nc|ENSG00000212789|Q8NFI4|ST13P5;nc|ENSG00000232150|Q8IZP2|ST13P4	ENSG00000100380|ENST00000216218|ST13	ENSG00000100380|ENST00000216218|ST13	MULTI-MATCH	OvCa9_classI_Rep2	2		2	485.716882	969.41921	0.1201	5.8336E-05	0.1039	5.0467E-05	0.22401	0.0001088	485.7168916718844	70.209	1.1665	67.638	67.311	68.478	-2.5707	0.025133	-0.00061757	NaN	85.359	28	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20165			63612	2059	52478	52528							-0.06672255413013772
WEEAAHDL	8	Unmodified	_WEEAAHDL_					0	0	0		ENSG00000100380|ENST00000216218|ST13;nc|ENSG00000212789|Q8NFI4|ST13P5;nc|ENSG00000232150|Q8IZP2|ST13P4	ENSG00000100380|ENST00000216218|ST13	ENSG00000100380|ENST00000216218|ST13	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	485.716882	969.41921	-0.80354	-0.00039029	1.0934	0.00053106	0.28982	0.00014077	485.7172436929402	71.158	1.0718	67.702	67.486	68.558	-3.4563	0.089309	0.00034362	NaN	85.359	38	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	104120			63613	2059	52478	52528							-0.06672255413013772
WEEGNGRIAL	10	Unmodified	_WEEGNGRIAL_					0	0	0		ENSG00000265107|ENST00000579774|GJA5	ENSG00000265107|ENST00000579774|GJA5	ENSG00000265107|ENST00000579774|GJA5	MULTI-MSMS	OvCa99_classI_Rep5	1	572.7925415039062	2	572.790912	1143.56727	2.3276	0.0013332	0.47258	0.00027069	2.8002	0.0016039	572.7910786795749	86.211	1.1844	86.211	85.912	87.096	0					60	28	3	0	0	0	0.28422	1	9071	9071		82.75	15.257	1	7349000			63614	9520	52479	52529	69973	69973					0.0012305584086789167
WEEGNGRIAL	10	Unmodified	_WEEGNGRIAL_					0	0	0		ENSG00000265107|ENST00000579774|GJA5	ENSG00000265107|ENST00000579774|GJA5	ENSG00000265107|ENST00000579774|GJA5	MULTI-MATCH	OvCa9_classI_Rep2	2		2	572.790912	1143.56727	0.53273	0.00030514	-2.5864	-0.0014815	-2.0537	-0.0011763	572.7896415478992	87.64	0.88506	86.209	85.791	86.676	-1.4311	0.018755	-0.0032704	NaN	82.75	25	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16838			63615	9520	52479	52529							0.0012305584086789167
WEEGNGRIAL	10	Unmodified	_WEEGNGRIAL_					0	0	0		ENSG00000265107|ENST00000579774|GJA5	ENSG00000265107|ENST00000579774|GJA5	ENSG00000265107|ENST00000579774|GJA5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	572.790912	1143.56727	-0.95635	-0.00054779	-0.15536	-8.8989E-05	-1.1117	-0.00063678	572.7906633791439	88.311	0.60474	86.18	85.906	86.51	-2.1309	-0.010629	-0.00048543	NaN	82.75	22	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51660			63616	9520	52479	52529							0.0012305584086789167
WEEGNGRIAL	10	Unmodified	_WEEGNGRIAL_					0	0	0		ENSG00000265107|ENST00000579774|GJA5	ENSG00000265107|ENST00000579774|GJA5	ENSG00000265107|ENST00000579774|GJA5	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	572.790912	1143.56727	-1.6376	-0.00093802	1.1008	0.00063054	-0.53681	-0.00030748	572.7915642126	88.764	0.64912	86.162	85.882	86.532	-2.6027	-0.028838	0.00095363	NaN	82.75	24	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41277			63617	9520	52479	52529							0.0012305584086789167
WEEKPINTAL	10	Unmodified	_WEEKPINTAL_					0	0	0		nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;CDK5RAP2|p.Y1498Gfs*4|1|0.29|ENSG00000136861|chr9:120409227-120409240|TCACGCTGGCATAC/-|frameshift_variant;ENST00000483412.5_1_9:123170580-123298708:-|nuORF	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	MULTI-MSMS	OvCa99_classI_Rep5	1	600.8189086914062	2	600.816596	1199.61864	1.8678	0.0011222	0.043554	2.6168E-05	1.9114	0.0011484	600.8164941850933	87.548	0.58051	87.548	87.257	87.838	0					27	13	3	0	0	0	0.31125	1	9266	9266		79.489	19.371	1	2161000			63618	4524	52480	52530	69974	69974					0.026813798149305512
WEGGSGESG	9	Unmodified	_WEGGSGESG_					0	0	0		ENST00000367279.8_1_1:202117499-202117730:-|nuORF	ENST00000367279.8_1_1:202117499-202117730:-|nuORF	ENST00000367279.8_1_1:202117499-202117730:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1717529296875	2	433.169764	864.324976	2.6506	0.0011482	1.0551	0.00045706	3.7058	0.0016052	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.61208	1	1827	1827		30.504	1.3541	1	60065			63619	10841	52481	52531	69975	69975					-0.11261394235123134
WEIENNPTV	9	Unmodified	_WEIENNPTV_					0	0	0		ENST00000482651.5_1_1:156713243-156717241:-|nuORF;ENST00000465180.5_1_1:156713243-156725382:-|nuORF;nc|ENSG00000143321|P51858-2|HDGF;ENSG00000143321|ENST00000357325|HDGF;nc|ENSG00000143321|P51858-3|HDGF;ENST00000469145.5_1_1:156714305-156721275:-|nuORF;ENSG00000112273|ENST00000510882|HDGFL1	ENST00000482651.5_1_1:156713243-156717241:-|nuORF	ENST00000482651.5_1_1:156713243-156717241:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	551.2662963867188	2	551.264196	1100.51384	2.4305	0.0013398	0.75776	0.00041773	3.1883	0.0017576	551.2644965397857	102.72	0.59329	102.72	102.5	103.1	0					33	13	4	0	0	0	0.18887	1	11466	11466		78.264	14.73	1	1234000			63620	5034	52482	52532	69976	69976					-0.03239741661695916
WEKLGEVAL	9	Unmodified	_WEKLGEVAL_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	OvCa99_classI_Rep5	1	522.7911987304688	2	522.78985	1043.56515	1.3466	0.00070397	0.37947	0.00019838	1.726	0.00090235	522.7898984539826	102.95	1.092	102.95	102.72	103.81	0					60	25	4	0	0	0	0.26076	1	11488	11488		67.494	5.8024	1	4088400			63621	3523	52483	52533	69977	69977					0.04510627103036313
WEMDTKEKL	9	Unmodified	_WEMDTKEKL_					0	0	0		ENSG00000096060|ENST00000357266|FKBP5;ENST00000542713.1_1_6:35554594-35565048:-|nuORF	ENSG00000096060|ENST00000357266|FKBP5	ENSG00000096060|ENST00000357266|FKBP5	MULTI-MSMS	OvCa99_classI_Rep5	1	590.291748046875	2	590.289356	1178.56416	-1.1923	-0.00070378	1.1146	0.00065796	-0.07762	-4.5818E-05	590.2899248853136	70.011	0.64864	70.011	69.798	70.447	0					26	15	2	0	0	0	0.049969	1	6684	6684		118.74	39.03	1	1995400			63622	1942	52484	52534	69978	69978					-0.01797955328174794
WEQLDKIPR	9	Unmodified	_WEQLDKIPR_					0	0	0		tr|A0A553SHT4|A0A553SHT4_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_13625PE=4SV=1	tr|A0A553SHT4|A0A553SHT4_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_13625PE=4SV=1	tr|A0A553SHT4|A0A553SHT4_NIACINAD(P)/FAD-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_13625PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	592.8250732421875	2	592.824755	1183.63496	1.396	0.00082761	-2.0509	-0.0012158	-0.65483	-0.0003882	592.8235652451264	96.965	2.0606	94.539	94.118	96.179	-2.4256					141	40	5	0	0	0	0.48324	1	8652	8652		44.117	8.9648	1	3169900			63623	33309	52485	52535	69979	69979					0.05048505771651435
WEQRQQWRRPR	11	Unmodified	_WEQRQQWRRPR_					0	0	0		ENSG00000136378|ENST00000388820|ADAMTS7;ENST00000568712.1_1_15:79063704-79103562:-|nuORF;ENST00000566303.5_1_15:79059386-79103601:-|nuORF;ENST00000565793.5_1_15:79069566-79092863:-|nuORF	ENSG00000136378|ENST00000388820|ADAMTS7	ENSG00000136378|ENST00000388820|ADAMTS7	MULTI-MSMS	OvCa9_classI_Rep2	2	542.6217041015625	3	542.622185	1624.84472	0.037685	2.0449E-05	0.27673	0.00015016	0.31442	0.00017061	542.6223764962355	71.226	1.989	68.719	68.281	70.27	-2.5071					125	37	6	0	0	0	0.72548	1	5722	5722		9.2118	3.2108	1	990210			63624	4486	52486	52536	69980	69980					0.05729561497332725
WERRRARWHWR	11	Unmodified	_WERRRARWHWR_					0	0	0		ENST00000607222.1_1_1:1550199-1550712:-|nuORF	ENST00000607222.1_1_1:1550199-1550712:-|nuORF	ENST00000607222.1_1_1:1550199-1550712:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	566.3609619140625	3	565.638169	1693.89268	-0.10242	-5.7934E-05	2.7278	0.0015429	2.6254	0.001485	565.6396255816439	100.53	0.77398	98.268	97.926	98.7	-2.2665					22	14	2	0	0	0	0.02653	1	9005	9005		3.4087	2.1768	1	23501			63625	14284	52487	52537	69981	69981					0.07348680208042424
WERRRLTHKLK	11	Unmodified	_WERRRLTHKLK_					0	0	0		ENST00000379565.7_1_X:20227482-20284914:-|nuORF	ENST00000379565.7_1_X:20227482-20284914:-|nuORF	ENST00000379565.7_1_X:20227482-20284914:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.2436218261719	3	508.307426	1521.90045	-0.10297	-5.2339E-05	-1.7245	-0.00087658	-1.8275	-0.00092892	508.3051376485233	30.385	0.2471	30.385	30.285	30.532	0					5	4	2	0	0	0	0.026324	1	1152	1152		16.53	7.3181	1	11372			63626	11129	52488	52538	69982	69982					0.1603739468494041
WESRYRTL	8	Unmodified	_WESRYRTL_					0	0	0		nc|ENSG00000135828|Q05823-2|RNASEL;ENSG00000135828|ENST00000367559|RNASEL	nc|ENSG00000135828|Q05823-2|RNASEL	nc|ENSG00000135828|Q05823-2|RNASEL	MULTI-SECPEP	OvCa9_classI_Rep2	2	554.8221435546875	2	555.788173	1109.56179	-0.3096	-0.00017207	-0.6017	-0.00033442	-0.91131	-0.00050649	556.2889972021741	100.36	0.39664	99.533	99.36	99.757	-0.83051					13	7	2	0	0	0	0.028476	1	9186	9186		18.324	0	1	19086			63627	4418	52489	52539	69983	69983					0.011393770490485622
WESSIVDRL	9	Unmodified	_WESSIVDRL_					0	0	0		nc|ENSG00000116871|Q3KQU3-4|MAP7D1;ENSG00000116871|ENST00000474796|MAP7D1;nc|ENSG00000116871|Q3KQU3|MAP7D1;nc|ENSG00000116871|Q3KQU3-2|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	nc|ENSG00000116871|Q3KQU3-4|MAP7D1	MULTI-MSMS	OvCa99_classI_Rep5	1	552.7886962890625	2	552.787838	1103.56112	2.5072	0.0013859	-0.94129	-0.00052033	1.5659	0.00086559	552.7871664974817	100.74	1.4596	100.74	100.36	101.82	0					67	34	3	0	0	0	0.14445	1	11173	11173		85.862	6.1492	1	4449400			63628	3215	52490	52540	69984	69984					0.013485376093512969
WESSNKALL	9	Unmodified	_WESSNKALL_					0	0	0		ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	ENSG00000084652|ENST00000373610|TXLNA	MULTI-MSMS	OvCa99_classI_Rep5	1	524.2804565429688	2	524.277106	1046.53966	2.1608	0.0011329	0.74464	0.0003904	2.9054	0.0015233	524.2775273671589	75.827	0.84164	75.827	75.601	76.443	0					47	20	3	0	0	0	0.2077	1	7560	7560		75.043	3.7476	1	3887000			63629	1717	52491	52541	69985	69985					0.01825152580613576
WEVESRDSL	9	Unmodified	_WEVESRDSL_					0	0	0		nc|ENSG00000146833|Q9C037|TRIM4;ENSG00000146833|ENST00000349062|TRIM4	nc|ENSG00000146833|Q9C037|TRIM4	nc|ENSG00000146833|Q9C037|TRIM4	MULTI-MSMS	OvCa99_classI_Rep5	1	560.7667846679688	2	560.767103	1119.51965	1.8208	0.001021	0.21878	0.00012269	2.0396	0.0011437	560.7670958458903	79.136	0.52547	79.136	78.911	79.436	0					34	12	4	0	0	0	0.094791	1	8053	8053		98.582	26.705	1	2216400			63630	5308	52492	52542	69986	69986					-0.03532643149992509
WEVESRDSL	9	Unmodified	_WEVESRDSL_					0	0	0		nc|ENSG00000146833|Q9C037|TRIM4;ENSG00000146833|ENST00000349062|TRIM4	nc|ENSG00000146833|Q9C037|TRIM4	nc|ENSG00000146833|Q9C037|TRIM4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	560.767103	1119.51965	-0.71482	-0.00040085	0.36647	0.00020551	-0.34835	-0.00019534	560.7672819371116	81.235	0.66344	78.912	78.594	79.257	-2.3226	-0.087964	0.00023228	NaN	98.582	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34663			63631	5308	52492	52542							-0.03532643149992509
WEVESRDSL	9	Unmodified	_WEVESRDSL_					0	0	0		nc|ENSG00000146833|Q9C037|TRIM4;ENSG00000146833|ENST00000349062|TRIM4	nc|ENSG00000146833|Q9C037|TRIM4	nc|ENSG00000146833|Q9C037|TRIM4	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	560.767103	1119.51965	0.31616	0.00017729	-0.2742	-0.00015376	0.041952	2.3525E-05	561.2684285030233	81.648	0.48588	78.952	78.705	79.191	-2.6957	-0.047838	-0.00048626	NaN	98.582	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31520			63632	5308	52492	52542							-0.03532643149992509
WFFFFFWFLVF	11	Unmodified	_WFFFFFWFLVF_					0	0	0			REV__ENST00000331789.9_1_7:5567138-5567345:-|nuORF	REV__ENST00000331789.9_1_7:5567138-5567345:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.7913818359375	3	544.940798	1631.80057	-1.2963	-0.00070643	-2.6224	-0.0014291	-3.9188	-0.0021355	544.9393184459858	92.416	1.1132	89.873	89.415	90.528	-2.5425					50	21	4	0	0	0	0.026525	1	8025	8025		6.6596	3.4483	1	113490	+		63633	24539	52493	52543	69987	69987					0.009937642984368722
WFFFFFWFLVF	11	Unmodified	_WFFFFFWFLVF_					0	0	0			REV__ENST00000331789.9_1_7:5567138-5567345:-|nuORF	REV__ENST00000331789.9_1_7:5567138-5567345:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	544.940798	1631.80057	1.0537	0.00057422	-5.4923	-0.002993	-4.4386	-0.0024187	544.9378845179382	91.057	1.0517	89.821	89.538	90.589	-1.2355	-0.062737	-0.002607	NaN	6.6596	47	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	136050	+		63634	24539	52493	52543							0.009937642984368722
WFFSSLVI	8	Unmodified	_WFFSSLVI_					0	0	0			REV__nc|ENSG00000101194|Q9BYT1-3|SLC17A9	REV__nc|ENSG00000101194|Q9BYT1-3|SLC17A9	MULTI-MSMS	OvCa99_classI_Rep5	1	499.77105712890625	2	499.770929	997.527304	2.1231	0.001061	-0.37099	-0.00018541	1.7521	0.00087563	499.7705543108703	106.09	1.1463	106.09	105.66	106.81	0					58	25	4	0	0	0	0.68312	1	11960	11960		46.766	0	1	2426500	+		63635	17479	52494	52544	69988	69988					0.028441609082278774
WFHHIFVPS	9	Unmodified	_WFHHIFVPS_					0	0	0		nc|ENSG00000234616|O75564|JRK;ENSG00000234616|ENST00000612905|JRK	nc|ENSG00000234616|O75564|JRK	nc|ENSG00000234616|O75564|JRK	MULTI-MSMS	OvCa9_classI_Rep2	2	585.296875	2	585.298176	1168.5818	-5.1209	-0.0029973	4.186	0.0024501	-0.93486	-0.00054717	585.3004174054372	158.93	1.4947	158.7	158.38	159.87	-0.22696					65	29	3	0	0	0	0.57242	2	16148	16148;16162		35.201	2.4077	1	82878			63636	9300	52495	52545	69989;69990	69989					0.00425172779659988
WFIHIRVV	8	Unmodified	_WFIHIRVV_					0	0	0			REV__ENSG00000255398|ENST00000528880|HCAR3	REV__ENSG00000255398|ENST00000528880|HCAR3	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.3195190429688	2	535.318912	1068.62327	-1.353	-0.00072428	0.72286	0.00038696	-0.63013	-0.00033732	535.3188478431949	82.653	1.1726	79.97	79.635	80.808	-2.683					56	23	3	0	0	0	0.75991	1	6863	6863		21.702	0.7554	1	251840	+		63637	23528	52496	52546	69991	69991					0.09170353538979725
WFLIVVAL	8	Unmodified	_WFLIVVAL_					0	0	0			REV__tr|A0A553SJD4|A0A553SJD4_NIACIUndecaprenyl-diphosphataseOS=NialliacirculansOX=1397GN=uppPPE=3SV=1	REV__tr|A0A553SJD4|A0A553SJD4_NIACIUndecaprenyl-diphosphataseOS=NialliacirculansOX=1397GN=uppPPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	480.7962341308594	2	480.799489	959.584425	-0.62495	-0.00030048	-3.3213	-0.0015969	-3.9462	-0.0018973	480.7976122112674	115	2.3234	114.88	114.5	116.83	-0.11777					104	46	4	0	0	0	0.69862	1	10966	10966		43.626	0	1	301760	+		63638	29998	52497	52547	69992	69992					0.1030162818460667
WFPLIRTRTLR	11	Unmodified	_WFPLIRTRTLR_					0	0	0			REV__ENST00000587275.1_1_19:56173925-56175041:+|nuORF	REV__ENST00000587275.1_1_19:56173925-56175041:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	486.9587097167969	3	486.961256	1457.86194	-4.7825	-0.0023289	0.04792	2.3335E-05	-4.7346	-0.0023056	486.9610953135575	160.39	2.6298	160.16	159.25	161.88	-0.22696					128	53	4	0	0	0	0.72545	1	16266	16266		9.6461	3.3253	1	96650	+		63639	27872	52498	52548	69993	69993					0.1513208905043939
WFPPRFSAL	9	Unmodified	_WFPPRFSAL_					0	0	0			REV__ENST00000477288.5_1_6:30882610-30884901:+|nuORF	REV__ENST00000477288.5_1_6:30882610-30884901:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.803466796875	2	560.800552	1119.58655	1.6271	0.00091251	3.7556	0.0021061	5.3827	0.0030186	560.802565252688	113.47	2.0685	112.03	111.61	113.67	-1.4461					95	40	3	0	0	0	0.71475	1	10538	10538		12.959	0.75233	1	624400	+		63640	19449	52499	52549	69994	69994					0.0315405692240347
WFPRVRRAAEV	11	Unmodified	_WFPRVRRAAEV_					0	0	0			REV__ENST00000411491.5_1_7:102920607-102920745:-|nuORF	REV__ENST00000411491.5_1_7:102920607-102920745:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	463.79364013671875	3	462.929955	1385.76804	-1.4248	-0.00065957	-2.6753	-0.0012385	-4.1001	-0.0018981	462.9286294698004	54.919	1.2764	51.671	51.388	52.664	-3.2474					68	24	4	0	0	0	0.026101	1	3482	3482		26.75	12.056	1	405170	+		63641	25489	52500	52550	69995	69995					0.09058369948161271
WFQNRRTKWRR	11	Unmodified	_WFQNRRTKWRR_					0	0	0		ENSG00000115297|ENST00000233638|TLX2;ENSG00000164438|ENST00000296921|TLX3;ENSG00000107807|ENST00000370196|TLX1	ENSG00000115297|ENST00000233638|TLX2	ENSG00000115297|ENST00000233638|TLX2	MULTI-MSMS	OvCa99_classI_Rep5	1	545.3054809570312	3	545.302675	1632.8862	1.4095	0.0007686	2.9146	0.0015893	4.3241	0.0023579	545.3044068828831	109.14	4.046	109.14	108.16	112.2	0					370	90	7	0	0	0	0.72516	3	12370	12346;12370;12466		13.508	3.8618	1	15485000			63642	3082	52501	52551	69996;69997;69998	69997					0.09506742256667167
WFRRLEHWRSL	11	Unmodified	_WFRRLEHWRSL_					0	0	0			REV__ENST00000549078.5_1_12:53344429-53346127:+|nuORF	REV__ENST00000549078.5_1_12:53344429-53346127:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.2908935546875	3	529.288143	1584.8426	-2.0891	-0.0011057	4.4294	0.0023444	2.3403	0.0012387	529.2905130248794	50.56	1.2714	47.386	47.1	48.372	-3.1734					90	24	6	0	0	0	0.72545	1	2908	2908		9.6461	1.9667	1	1319500	+		63643	27452	52502	52552	69999	69999					0.07357132759534579
WFVEFYSRRIT	11	Unmodified	_WFVEFYSRRIT_					0	0	0			REV__ENSG00000165168|ENST00000378588|CYBB	REV__ENSG00000165168|ENST00000378588|CYBB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.7817077636719	3	501.929621	1502.76703	-0.34755	-0.00017444	2.113	0.0010606	1.7654	0.00088613	502.2655621178391	68.593	1.133	65.103	64.818	65.951	-3.4902					30	22	2	0	0	0	0.026068	1	5155	5155		16.53	3.0219	1	63936	+		63644	21064	52503	52553	70000	70000					0.03576110788594633
WFVEFYSRRIT	11	Unmodified	_WFVEFYSRRIT_					0	0	0			REV__ENSG00000165168|ENST00000378588|CYBB	REV__ENSG00000165168|ENST00000378588|CYBB	MULTI-MATCH	OvCa9_classI_Rep3	3		3	501.929621	1502.76703	0.47967	0.00024076	-1.5279	-0.00076691	-1.0483	-0.00052615	502.2632614460058	67.978	0.54982	65.091	64.739	65.289	-2.8873	-0.0061867	-0.0017546	NaN	16.53	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15478	+		63645	21064	52503	52553							0.03576110788594633
WFWDFSTKT	9	Unmodified	_WFWDFSTKT_					0	0	0		CON__Q3SZV7	CON__Q3SZV7	CON__Q3SZV7	MULTI-SECPEP	OvCa99_classI_Rep5	1	406.2285461425781	3	406.525713	1216.55531	0.47193	0.00019185	-0.065462	-2.6612E-05	0.40647	0.00016524	406.5256087995536	53.424	0.34908	53.424	53.214	53.564	0					11	7	2	0	0	0	0.027462	1	4250	4250		21.686	0	1	133780		+	63646	649	52504	52554	70001	70001					-0.044305609023467696
WFWDRRRRRNR	11	Unmodified	_WFWDRRRRRNR_					0	0	0			REV__ENST00000361972.8_1_10:7212945-7217999:-|nuORF	REV__ENST00000361972.8_1_10:7212945-7217999:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.7942504882812	3	568.645324	1702.91414	-0.81069	-0.000461	1.4154	0.00080489	0.60476	0.00034389	568.9805820753893	90.342	0.563	88.261	88.004	88.567	-2.0805					15	10	2	0	0	0	0.02653	1	5588	5588		3.4087	0	1	26643	+		63647	24871	52505	52555	70002	70002					0.09080065236753398
WFWDRRRRRNR	11	Unmodified	_WFWDRRRRRNR_					0	0	0			REV__ENST00000361972.8_1_10:7212945-7217999:-|nuORF	REV__ENST00000361972.8_1_10:7212945-7217999:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.7946166992188	3	568.645324	1702.91414	0.39326	0.00022362	-0.13688	-7.7837E-05	0.25637	0.00014579	569.3138156296619	90.71	0.56375	88.135	87.801	88.365	-2.575					21	10	3	0	0	0	0.026512	1	7819	7819		5.4129	4.181	1	25821	+		63648	24871	52505	52555	70003	70003					0.09080065236753398
WFYLDYRT	8	Unmodified	_WFYLDYRT_					0	0	0			REV__ENST00000593477.1_1_19:41312411-41313222:+|nuORF	REV__ENST00000593477.1_1_19:41312411-41313222:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	582.2847900390625	2	582.279649	1162.54475	-1.1627	-0.00067702	2.6596	0.0015486	1.4969	0.00087161	582.2812564143637	46.548	1.6391	43.475	42.927	44.566	-3.0724					71	31	3	0	0	0	0.56113	1	2463	2463		71.378	2.2849	1	1597200	+		63649	27965	52506	52556	70004	70004					-0.0300254355679499
WGAARTVN	8	Unmodified	_WGAARTVN_					0	0	0			REV__ENST00000336617.7_1_13:51483970-51501548:+|nuORF	REV__ENST00000336617.7_1_13:51483970-51501548:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	436.7640380859375	2	437.730126	873.4457	1.0026	0.00043888	4.4765	0.0019595	5.4792	0.0023984	437.73139238309085	72.221	0.62725	69.714	69.433	70.06	-2.5071					15	11	2	0	0	0	0.028476	1	5815	5815		16.473	2.6978	1	7826.6	+		63650	24588	52507	52557	70005	70005					0.003914782690003449
WGAARTVN	8	Unmodified	_WGAARTVN_					0	0	0			REV__ENST00000336617.7_1_13:51483970-51501548:+|nuORF	REV__ENST00000336617.7_1_13:51483970-51501548:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	437.730126	873.4457	-0.72799	-0.00031866	4.9945	0.0021862	4.2665	0.0018676	437.7321567954952	73.473	0.53259	70.077	69.785	70.317	-3.3961	0.18155	0.00017428	NaN	16.473	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16042	+		63651	24588	52507	52557							0.003914782690003449
WGAPVLLSSLL	11	Unmodified	_WGAPVLLSSLL_					0	0	0		FMO4|p.A525S|1|0.42|ENSG00000076258|chr1:171341735-171341735|G/T|missense_variant	FMO4|p.A525S|1|0.42|ENSG00000076258|chr1:171341735-171341735|G/T|missense_variant	FMO4|p.A525S|1|0.42|ENSG00000076258|chr1:171341735-171341735|G/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	578.3433227539062	2	578.342249	1154.66995	0.4612	0.00026673	-1.0846	-0.00062727	-0.62339	-0.00036054	578.3416400189515	151.75	0.47438	151.75	151.45	151.93	0					14	9	2	0	0	0	0.43234	1	17757	17757		58.782	24.609	1	67493			63652	14335	52508	52558	70006	70006					0.09879748579623993
WGCLCTLNL	9	Unmodified	_WGCLCTLNL_					0	0	0		ENST00000474352.5_1_1:151341776-151342064:-|nuORF;ENST00000493560.5_1_1:151341776-151345168:-|nuORF	ENST00000474352.5_1_1:151341776-151342064:-|nuORF	ENST00000474352.5_1_1:151341776-151342064:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.2661743164062	2	511.743531	1021.47251	-0.28678	-0.00014676	2.8559	0.0014615	2.5691	0.0013147	511.74480128707324	50.955	0.51859	50.955	50.73	51.248	0					17	11	2	0	0	0	0.027426	1	3896	3896		63.306	6.5852	1	361660			63653	12431	52509	52559	70007	70007					-0.03736917226353853
WGDESYVSL	9	Unmodified	_WGDESYVSL_					0	0	0			REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.76513671875	2	528.237647	1054.46074	-0.72252	-0.00038166	-2.9544	-0.0015606	-3.677	-0.0019423	528.236047392186	90.593	0.71832	88.018	87.75	88.469	-2.575					23	13	2	0	0	0	0.027462	1	7809	7809		27.882	0	1	101610	+		63654	22973	52510	52560	70008	70008					-0.06431119444323485
WGDESYVSL	9	Unmodified	_WGDESYVSL_					0	0	0			REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	REV__nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	528.237647	1054.46074	-0.90994	-0.00048067	-2.7122	-0.0014327	-3.6222	-0.0019134	528.2363387172987	90.055	0.97482	87.975	87.644	88.619	-2.0805	-0.021469	0.00013406	NaN	35.618	47	18	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116900	+		63655	22973	52510	52560							-0.06431119444323485
WGEKLPLYI	9	Unmodified	_WGEKLPLYI_					0	0	0			REV__ENST00000256151.7_1_12:82746644-82746788:-|nuORF	REV__ENST00000256151.7_1_12:82746644-82746788:-|nuORF	MSMS	OvCa99_classI_Rep5	1	559.8176879882812	2	559.815867	1117.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.6	1	141.6	141.1	142.1	0								0	0	0	0.17298	1	16541	16541		44.377	7.2181	1		+		63656	23888	52511	52561	70009	70009					0.06307790516802925
WGEKLPLYI	9	Unmodified	_WGEKLPLYI_					0	0	0			REV__ENST00000256151.7_1_12:82746644-82746788:-|nuORF	REV__ENST00000256151.7_1_12:82746644-82746788:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.8156127929688	2	559.815867	1117.61718	3.9956	0.0022368	-4.2464	-0.0023772	-0.25077	-0.00014038	559.813249709843	134.7	2.6126	133.16	132.47	135.08	-1.5437					137	52	4	0	0	0	0.50149	1	13032	13032		42.396	3.1433	1	191680	+		63657	23888	52511	52561	70010	70010					0.06307790516802925
WGFPFVNIK	9	Unmodified	_WGFPFVNIK_					0	0	0		ENST00000439768.2_1_5:153433260-153433407:+|nuORF	ENST00000439768.2_1_5:153433260-153433407:+|nuORF	ENST00000439768.2_1_5:153433260-153433407:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.3049926757812	2	554.302927	1106.5913	0.14101	7.816E-05	2.7564	0.0015279	2.8974	0.001606	554.304352551779	21.861	1.1079	20.523	20.27	21.378	-1.3386					61	21	4	0	0	0	0.50066	1	238	238		42.474	6.0277	1	233410			63658	11921	52512	52562	70011	70011					0.04226941065189749
WGGLRARLL	9	Unmodified	_WGGLRARLL_					0	0	0		ENST00000264712.7_1_2:26204855-26205287:-|nuORF	ENST00000264712.7_1_2:26204855-26205287:-|nuORF	ENST00000264712.7_1_2:26204855-26205287:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.2671508789062	2	521.319443	1040.62433	-0.99568	-0.00051907	-4.0803	-0.0021271	-5.076	-0.0026462	521.8176712586416	89.078	0.19562	86.476	86.336	86.532	-2.6027					5	3	2	0	0	0	0.027433	1	7623	7623		57.811	0	1	9166.6			63659	9936	52513	52563	70012	70012					0.10564567907886158
WGIAKISVL	9	Unmodified	_WGIAKISVL_					0	0	0			REV__nc|ENSG00000139370|Q8N697-2|SLC15A4	REV__nc|ENSG00000139370|Q8N697-2|SLC15A4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.317626953125	2	493.805303	985.596052	0.022388	1.1055E-05	-0.078496	-3.8762E-05	-0.056109	-2.7707E-05	493.8053026344195	105.59	1.4546	103.57	103	104.46	-2.0161					57	28	3	0	0	0	0.027279	1	9579	9579		42.396	0	1	221600	+		63660	19607	52514	52564	70013	70013					0.10267825207949954
WGILGSNTSL	10	Unmodified	_WGILGSNTSL_					0	0	0			REV__ENSG00000198793|ENST00000361445|MTOR	REV__ENSG00000198793|ENST00000361445|MTOR	MULTI-SECPEP	OvCa9_classI_Rep2	2	523.8067016601562	2	524.277106	1046.53966	0.053429	2.8012E-05	-2.1975	-0.0011521	-2.1441	-0.0011241	524.2754840821724	78.393	1.4738	76.653	75.987	77.46	-1.7398					69	28	3	0	0	0	0.026936	1	6577	6577		84.916	8.1414	1	92795	+		63661	23062	52515	52565	70014	70014					0.018251525806363134
WGIQYTKL	8	Unmodified	_WGIQYTKL_					0	0	0			REV__nc|ENSG00000111799|Q99715-4|COL12A1	REV__nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	504.7966003417969	2	504.779285	1007.54402	-0.27429	-0.00013845	-2.0379	-0.0010287	-2.3122	-0.0011672	504.77665151913703	66.957	0.2942	63.467	63.247	63.541	-3.4902					8	5	2	0	0	0	0.028476	1	4900	4900		63.306	3.188	1	12434	+		63662	18060	52516	52566	70015	70015					0.040546617941686236
WGIWRNPV	8	Unmodified	_WGIWRNPV_					0	0	0		AluJb_dup10104|chr1:206072830-206073136:-|1.3794957716104348|0.0558356921634704|4.63|415.0|12|3|sense	AluJb_dup10104|chr1:206072830-206073136:-|1.3794957716104348|0.0558356921634704|4.63|415.0|12|3|sense	AluJb_dup10104|chr1:206072830-206073136:-|1.3794957716104348|0.0558356921634704|4.63|415.0|12|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.8690795898438	2	514.277244	1026.53993	1.8757	0.00096465	-2.728	-0.001403	-0.85228	-0.00043831	514.2747662555129	107.32	0.67204	107.32	106.97	107.65	0					34	15	3	0	0	0	0.028476	1	12144	12144		20.482	0	1	855360			63663	63	52517	52567	70016	70016					0.027726170911364534
WGLAIILIL	9	Unmodified	_WGLAIILIL_					0	0	0		ENST00000521263.1_1_1:231004945-231005236:-|nuORF	ENST00000521263.1_1_1:231004945-231005236:-|nuORF	ENST00000521263.1_1_1:231004945-231005236:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	506.33074951171875	2	506.333696	1010.65284	-0.49607	-0.00025117	-3.7021	-0.0018745	-4.1982	-0.0021257	506.331740533061	135.27	1.2754	135.05	134.74	136.01	-0.22697					65	25	4	0	0	0	0.32242	1	13428	13428		60.404	0	1	139920			63664	13117	52518	52568	70017	70017					0.14793872764482785
WGLAMQIFL	9	Unmodified	_WGLAMQIFL_					0	0	0			REV__ENSG00000117834|ENST00000438567|SLC5A9	REV__ENSG00000117834|ENST00000438567|SLC5A9	MULTI-SECPEP	OvCa9_classI_Rep4_	4	540.2911376953125	2	539.791338	1077.56812	0.60442	0.00032626	1.5644	0.00084447	2.1689	0.0011707	539.7921203977694	85.55	1.5713	82.904	82.66	84.231	-2.6463					51	31	2	0	0	0	0.027462	1	7341	7341		42.474	16.9	1	279760	+		63665	18370	52519	52569	70018	70018					0.03244178956219912
WGLESSLLL	9	Unmodified	_WGLESSLLL_					0	0	0			REV__nc|ENSG00000062524|P29376-3|LTK	REV__nc|ENSG00000062524|P29376-3|LTK	MULTI-SECPEP	OvCa9_classI_Rep4_	4	508.81646728515625	2	509.2844	1016.55425	-0.14833	-7.5543E-05	-4.2128	-0.0021455	-4.3611	-0.0022211	509.2826315093232	75.856	0.53152	72.917	72.643	73.175	-2.9389					19	10	3	0	0	0	0.027417	1	5995	5995		65.803	0	1	90388	+		63666	27659	52520	52570	70019	70019					0.04663224728778914
WGLFIDNE	8	Unmodified	_WGLFIDNE_					0	0	0			REV__ENSG00000170871|ENST00000307659|KIAA0232	REV__ENSG00000170871|ENST00000307659|KIAA0232	MULTI-SECPEP	OvCa9_classI_Rep3	3	496.2954406738281	2	497.23745	992.460347	-0.83539	-0.00041539	0.68158	0.00033891	-0.1538	-7.6477E-05	497.2376138319465	87.801	0.67001	85.624	85.345	86.015	-2.1768					22	12	2	0	0	0	0.028476	1	5297	5297		31.955	0	1	21039	+		63667	21570	52521	52571	70020	70020					-0.03618494373529302
WGLHLLLVF	9	Unmodified	_WGLHLLLVF_					0	0	0		ENST00000540429.1_1_12:26646977-26648169:-|nuORF	ENST00000540429.1_1_12:26646977-26648169:-|nuORF	ENST00000540429.1_1_12:26646977-26648169:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.3001098632812	2	549.328945	1096.64334	1.9074	0.0010478	-3.3551	-0.001843	-1.4477	-0.00079526	549.3267752367345	99.868	0.41177	99.868	99.694	100.11	0					15	9	2	0	0	0	0.027462	1	11035	11035		21.702	0	1	379940			63668	13452	52522	52572	70021	70021					0.09888104478932291
WGLLALLLL	9	Unmodified	_WGLLALLLL_					0	0	0			REV__ENST00000358133.5_1_1:11994791-12014648:+|nuORF	REV__ENST00000358133.5_1_1:11994791-12014648:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	506.3313903808594	2	506.333696	1010.65284	-0.48567	-0.00024591	-3.4639	-0.0017539	-3.9496	-0.0019998	506.33188661899624	122.71	0.88946	122.49	122.22	123.11	-0.21803					45	17	3	0	0	0	0.42921	1	11884	11884		49.211	0	1	120630	+		63669	17101	52523	52573	70022	70022					0.14793872764482785
WGLLIPVSI	9	Unmodified	_WGLLIPVSI_					0	0	0			REV__ENSG00000178015|ENST00000380007|GPR150	REV__ENSG00000178015|ENST00000380007|GPR150	MULTI-SECPEP	OvCa9_classI_Rep2	2	498.771240234375	2	499.307678	996.600803	-1.2828	-0.00064049	-3.7392	-0.001867	-5.022	-0.0025075	499.30559967909045	100.76	0.59579	99.998	99.724	100.32	-0.76401					16	11	2	0	0	0	0.027441	1	9257	9257		33.516	0	1	17100	+		63670	22038	52524	52574	70023	70023					0.10236709350692763
WGLLVVRVIEP	11	Unmodified	_WGLLVVRVIEP_					0	0	0			REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|228|1|anti-sense	REV__HERVE_a-int_dup43|chr4:35101011-35108768:+|1.9644866441523825|0.032038650355775|5.94|413.0|228|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	640.8897094726562	2	640.889898	1279.76524	-0.17045	-0.00010924	0.2933	0.00018797	0.12285	7.8731E-05	640.8899760073222	130.96	1.1409	130.73	130.4	131.54	-0.22697					67	22	4	0	0	0	0.69808	1	12925	12925		30.318	3.6248	1	368320	+		63671	28202	52525	52575	70024	70024					0.13655101770632427
WGLRTDIN	8	Unmodified	_WGLRTDIN_					0	0	0			REV__ENST00000414287.5_1_22:49808404-49808650:-|nuORF	REV__ENST00000414287.5_1_22:49808404-49808650:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.8091735839844	2	487.756341	973.498129	-0.92613	-0.00045172	-0.35325	-0.0001723	-1.2794	-0.00062402	487.75609820168637	50.105	0.34442	50.105	49.944	50.288	0					12	7	2	0	0	0	0.028476	1	3781	3781		40.573	0	1	253110	+		63672	25517	52526	52576	70025	70025					0.010320166119413443
WGLVDPEDF	9	Unmodified	_WGLVDPEDF_					0	0	0		ENST00000262554.6_1_9:94830338-94842342:-|nuORF	ENST00000262554.6_1_9:94830338-94842342:-|nuORF	ENST00000262554.6_1_9:94830338-94842342:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.7899780273438	2	539.248015	1076.48148	-2.5698	-0.0013858	3.0114	0.0016239	0.4416	0.00023813	539.7526696243227	49.177	0.46954	46.035	45.832	46.301	-3.1416					20	8	3	0	0	0	0.027448	1	2782	2782		53.351	21.397	1	33213			63673	9895	52527	52577	70026	70026					-0.053705290646803405
WGLVVQCVA	9	Unmodified	_WGLVVQCVA_					0	0	0		ENST00000327827.11_1_16:9212523-9212682:+|nuORF	ENST00000327827.11_1_16:9212523-9212682:+|nuORF	ENST00000327827.11_1_16:9212523-9212682:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.76190185546875	2	487.760038	973.505523	0.23635	0.00011528	1.6398	0.00079982	1.8761	0.00091511	487.7609543280194	59.323	1.0374	55.931	55.553	56.591	-3.392					84	20	6	0	0	0	0.25214	1	3947	3947		68.485	0.99103	1	1233600			63674	10418	52528	52578	70027	70027					0.017710328880070847
WGMVCPAET	9	Unmodified	_WGMVCPAET_					0	0	0		ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	ENSG00000047315|ENST00000314595|POLR2B	MULTI-SECPEP	OvCa9_classI_Rep3	3	496.2954406738281	2	497.212063	992.409574	-1.06	-0.00052705	4.0273	0.0020024	2.9673	0.0014754	497.2139441199364	87.289	1.0236	85.112	84.734	85.757	-2.1768					31	19	2	0	0	0	0.027462	1	5297	5297		40.573	16.37	1	60234			63675	1141	52529	52579	70028	70028					-0.08693483014383219
WGNRFKKL	8	Unmodified	_WGNRFKKL_					0	0	0		ENST00000562118.1_1_16:68857288-68867399:+|nuORF;nc|ENSG00000039068|P12830-2|CDH1;ENST00000562836.5_1_16:68797408-68867399:+|nuORF;ENSG00000039068|ENST00000261769|CDH1	ENST00000562118.1_1_16:68857288-68867399:+|nuORF	ENST00000562118.1_1_16:68857288-68867399:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2902221679688	2	524.806168	1047.59778	1.9413	0.0010188	-0.76947	-0.00040382	1.1718	0.00061498	524.8053294267941	108.32	0.90022	108.32	107.9	108.8	0					34	20	2	0	0	0	0.028476	1	12200	12200		62.978	0	1	1138900			63676	1101	52530	52580	70029	70029					0.07588879016566352
WGPCYLLV	8	Unmodified	_WGPCYLLV_					0	0	0			REV__AluJb_dup105930|chr17:16441567-16441818:-|1.204158333585596|0.4201583608019265|1.52|429.0|11|1|anti-sense	REV__AluJb_dup105930|chr17:16441567-16441818:-|1.204158333585596|0.4201583608019265|1.52|429.0|11|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	476.2619323730469	2	475.743857	949.47316	0.33862	0.0001611	0.15519	7.3829E-05	0.49381	0.00023493	475.74327671428915	47.215	0.30975	44.143	43.962	44.272	-3.0724					7	5	2	0	0	0	0.028476	1	2535	2535		10.185	0	1	19595	+		63677	15592	52531	52581	70030	70030					-0.0035975451497733957
WGPERGANL	9	Unmodified	_WGPERGANL_					0	0	0		ENST00000444881.5_1_2:219151193-219151334:-|nuORF	ENST00000444881.5_1_2:219151193-219151334:-|nuORF	ENST00000444881.5_1_2:219151193-219151334:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	499.8055114746094	2	500.253966	998.493378	0.98979	0.00049515	1.1333	0.00056695	2.1231	0.0010621	500.2545122051792	85.572	0.59333	82.926	82.8	83.394	-2.6463					15	11	2	0	0	0	0.027295	1	7203	7203		54.776	0	1	19756			63678	11964	52532	52582	70031	70031					-0.005928675308155107
WGPGLCPQSL	10	Unmodified	_WGPGLCPQSL_					0	0	0			REV__ENST00000484846.1_1_11:64623516-64624089:-|nuORF	REV__ENST00000484846.1_1_11:64623516-64624089:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.2832641601562	2	529.260402	1056.50625	1.6957	0.00089746	-1.3508	-0.00071495	0.34484	0.00018251	529.2596361648191	92.614	0.62898	92.614	92.174	92.803	0					24	14	2	0	0	0	0.026752	1	10018	10018		27.882	0	1	226910	+		63679	26552	52533	52583	70032	70032					-0.019741724629511737
WGPILHILK	9	Unmodified	_WGPILHILK_					0	0	0		L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|134|3|sense	L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|134|3|sense	L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|134|3|sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	538.86328125	2	538.834394	1075.65424	-0.27174	-0.00014642	1.4813	0.0007982	1.2096	0.00065177	538.8352005014508	132.38	0.24776	132.15	131.93	132.18	-0.22696					5	4	2	0	0	0	0.027462	1	13059	13059		24.203	7.7296	1	10371			63680	14703	52534	52584	70033	70033					0.11943506853208419
WGPLAAAAAR	10	Unmodified	_WGPLAAAAAR_					0	0	0			REV__ENST00000435944.5_1_10:119806365-119811679:+|nuORF	REV__ENST00000435944.5_1_10:119806365-119811679:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	492.2720947265625	2	492.274701	982.534849	-0.79248	-0.00039012	-3.748	-0.001845	-4.5405	-0.0022352	492.27281781556945	38.402	2.3795	35.692	35.32	37.7	-2.7097					117	47	5	0	0	0	0.55145	1	1866	1866		47.916	3.7988	1	1550300	+		63681	25779	52535	52585	70034	70034					0.04288313228505558
WGPLVGTLE	9	Unmodified	_WGPLVGTLE_					0	0	0			REV__ENST00000455577.6_1_15:40531811-40531901:+|nuORF	REV__ENST00000455577.6_1_15:40531811-40531901:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	486.2648620605469	2	486.263468	970.512382	1.1545	0.00056141	2.1439	0.0010425	3.2985	0.0016039	486.26439439503525	61.985	2.2064	58.916	57.872	60.078	-3.0685					97	53	2	0	0	0	0.57242	1	2179	2179		35.201	3.2459	1	48498	+		63682	26017	52536	52586	70035	70035					0.02594669040252029
WGPYMVVIA	9	Unmodified	_WGPYMVVIA_					0	0	0		nc|ENSG00000143147|Q8N6U8-3|GPR161;nc|ENSG00000143147|Q8N6U8-2|GPR161;nc|ENSG00000143147|Q8N6U8-5|GPR161;ENST00000493800.1_1_1:168059784-168074118:-|nuORF;nc|ENSG00000143147|Q8N6U8-4|GPR161;ENSG00000143147|ENST00000682931|GPR161;nc|ENSG00000143147|Q8N6U8-6|GPR161	nc|ENSG00000143147|Q8N6U8-3|GPR161	nc|ENSG00000143147|Q8N6U8-3|GPR161	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.7982788085938	2	518.270238	1034.52592	1.4265	0.00073932	2.501	0.0012962	3.9275	0.0020355	518.2720917666251	111.14	0.44557	110.03	109.76	110.2	-1.1038					12	8	2	0	0	0	0.027462	1	8032	8032		39.021	8.5179	1	13218			63683	5013	52537	52587	70036	70036					0.010042035478363687
WGQKLLEFI	9	Unmodified	_WGQKLLEFI_					0	0	0		nc|ENSG00000178222|Q495C1-6|RNF212;nc|ENSG00000178222|Q495C1-4|RNF212	nc|ENSG00000178222|Q495C1-6|RNF212	nc|ENSG00000178222|Q495C1-6|RNF212	MULTI-MSMS	OvCa9_classI_Rep2	2	567.31884765625	2	567.321317	1132.62808	-1.5919	-0.00090313	-1.6613	-0.00094251	-3.2533	-0.0018456	567.3204758129912	84.581	1.3452	83.034	82.745	84.091	-1.5462					89	26	5	0	0	0	0.38529	1	7318	7318		53.351	0	1	1915100			63684	15196	52538	52588	70037	70037					0.06707192891099112
WGRCRWRRQRR	11	Unmodified	_WGRCRWRRQRR_					0	0	0			REV__ENST00000262304.8_1_16:2144134-2144200:-|nuORF	REV__ENST00000262304.8_1_16:2144134-2144200:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.7310791015625	3	539.295637	1614.86508	1.6944	0.00091378	3.9837	0.0021484	5.6781	0.0030622	539.2971423443387	93.663	0.83113	93.663	93.305	94.136	0					31	19	3	0	0	0	0.026435	1	10165	10165		9.6461	3.6451	1	1098600	+		63685	23972	52539	52589	70038	70038					0.0822445367614364
WGRGAVHLP	9	Unmodified	_WGRGAVHLP_					0	0	0		ENST00000299320.9_1_16:4786559-4787880:+|nuORF	ENST00000299320.9_1_16:4786559-4787880:+|nuORF	ENST00000299320.9_1_16:4786559-4787880:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.283935546875	2	496.774868	991.535184	-0.73979	-0.00036751	-0.13776	-6.8434E-05	-0.87754	-0.00043594	496.77459212446416	127.73	1.082	126.3	125.99	127.07	-1.4357					38	20	3	0	0	0	0.027462	1	12271	12271		24.203	1.1603	1	51461			63686	10160	52540	52590	70039	70039					0.039077329483802714
WGRGKLALL	9	Unmodified	_WGRGKLALL_					0	0	0			REV__ENSG00000178567|ENST00000322716|EPM2AIP1	REV__ENSG00000178567|ENST00000322716|EPM2AIP1	MULTI-MSMS	OvCa9_classI_Rep3	3	507.31640625	2	507.316369	1012.61818	-0.96298	-0.00048854	-0.70282	-0.00035655	-1.6658	-0.00084509	507.3158623915197	117.79	1.8845	116.76	116.44	118.32	-1.0324					99	37	4	0	0	0	0.46377	1	8900	8900		45.952	1.8352	1	576140	+		63687	22065	52541	52591	70040	70040					0.11238049676364881
WGRKKGPS	8	Unmodified	_WGRKKGPS_					0	0	0			REV__ENST00000333461.5_1_17:37367130-37367274:-|nuORF	REV__ENST00000333461.5_1_17:37367130-37367274:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	458.2858581542969	2	458.261594	914.508634	0.17606	8.0683E-05	1.392	0.0006379	1.5681	0.00071858	458.26099868871535	64.561	1.406	61.076	60.724	62.13	-3.4854					47	28	4	0	0	0	0.028476	1	4685	4685		26.796	0	1	93144	+		63688	24555	52542	52592	70041	70041					0.04796044057047766
WGRNRGRLL	9	Unmodified	_WGRNRGRLL_					0	0	0		SLC30A1|p.E338Lfs*17|1|0.35|ENSG00000170385|chr1:211575894-211575900|CAGATTC/-|frameshift_variant;ENSG00000170385|ENST00000367001|SLC30A1	SLC30A1|p.E338Lfs*17|1|0.35|ENSG00000170385|chr1:211575894-211575900|CAGATTC/-|frameshift_variant	SLC30A1|p.E338Lfs*17|1|0.35|ENSG00000170385|chr1:211575894-211575900|CAGATTC/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.2911376953125	2	564.330873	1126.64719	0.067747	3.8232E-05	1.5351	0.00086631	1.6029	0.00090455	564.3315800521374	60.115	0.55506	60.115	59.879	60.434	0					33	13	3	0	0	0	0.027462	1	5213	5213		30.504	2.6214	1	907660			63689	7099	52543	52593	70042	70042					0.08893587025363558
WGRPVGPLARR	11	Unmodified	_WGRPVGPLARR_					0	0	0		ENSG00000180902|ENST00000321264|D2HGDH;ENST00000463932.1_1_2:242674639-242675412:+|nuORF;nc|ENSG00000180902|Q8N465-2|D2HGDH;nc|ENSG00000180902|Q8N465-3|D2HGDH	ENSG00000180902|ENST00000321264|D2HGDH	ENSG00000180902|ENST00000321264|D2HGDH	MULTI-MSMS	OvCa9_classI_Rep4_	4	632.8726806640625	2	632.872905	1263.73126	-0.88289	-0.00055875	-0.56085	-0.00035495	-1.4437	-0.0009137	632.8724355730793	95.255	1.1558	92.786	92.511	93.666	-2.4685					55	22	3	0	0	0	0.71191	1	8370	8370		25.574	1.3713	1	260120			63690	7897	52544	52594	70043	70043					0.1099411812224389
WGRPVGPLARR	11	Unmodified	_WGRPVGPLARR_					0	0	0		ENSG00000180902|ENST00000321264|D2HGDH;ENST00000463932.1_1_2:242674639-242675412:+|nuORF;nc|ENSG00000180902|Q8N465-2|D2HGDH;nc|ENSG00000180902|Q8N465-3|D2HGDH	ENSG00000180902|ENST00000321264|D2HGDH	ENSG00000180902|ENST00000321264|D2HGDH	MULTI-MATCH	OvCa9_classI_Rep2	2		2	632.872905	1263.73126	-1.0191	-0.00064494	-0.13818	-8.745E-05	-1.1573	-0.00073239	632.8727750328007	93.856	0.92365	92.756	92.487	93.411	-1.0995	-0.030265	0.00061428	NaN	25.574	46	17	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	187410			63691	7897	52544	52594							0.1099411812224389
WGRPVGPLARR	11	Unmodified	_WGRPVGPLARR_					0	0	0		ENSG00000180902|ENST00000321264|D2HGDH;ENST00000463932.1_1_2:242674639-242675412:+|nuORF;nc|ENSG00000180902|Q8N465-2|D2HGDH;nc|ENSG00000180902|Q8N465-3|D2HGDH	ENSG00000180902|ENST00000321264|D2HGDH	ENSG00000180902|ENST00000321264|D2HGDH	MULTI-MATCH	OvCa9_classI_Rep3	3		2	632.872905	1263.73126	-0.20598	-0.00013036	-1.0454	-0.00066163	-1.2514	-0.00079199	632.872160711152	94.713	1.1526	92.817	92.511	93.664	-1.8956	0.030609	-0.00053407	NaN	25.574	61	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	273860			63692	7897	52544	52594							0.1099411812224389
WGRQMAKLI	9	Unmodified	_WGRQMAKLI_					0	0	0			REV__ENST00000381151.4_2_21:35445925-35467182:+|nuORF	REV__ENST00000381151.4_2_21:35445925-35467182:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	551.7875366210938	2	551.813136	1101.61172	0.77329	0.00042671	-3.3777	-0.0018638	-2.6044	-0.0014371	551.8102576703061	111.33	1.6471	110.23	109.49	111.14	-1.1038					65	32	3	0	0	0	0.027417	1	8095	8095		45.952	12.03	1	73193	+		63693	25191	52545	52595	70044	70044					0.06497788453361864
WGRRPRLT	8	Unmodified	_WGRRPRLT_					0	0	0		nc|ENSG00000115317|O43464-2|HTRA2;HTRA2|p.A327Efs*39|1|0.3|ENSG00000115317|chr2:74531636-74531637|-/AA|frameshift_variant;nc|ENSG00000115317|O43464-4|HTRA2;nc|ENSG00000115317|O43464-3|HTRA2;ENSG00000115317|ENST00000258080|HTRA2	nc|ENSG00000115317|O43464-2|HTRA2	nc|ENSG00000115317|O43464-2|HTRA2	MULTI-SECPEP	OvCa9_classI_Rep2	2	521.282470703125	2	521.306867	1040.59918	0.096431	5.027E-05	-3.3256	-0.0017336	-3.2291	-0.0016834	521.3054059398929	70.008	0.59789	67.437	66.915	67.512	-2.5707					16	11	2	0	0	0	0.028476	1	5572	5572		26.796	9.4311	1	72679			63694	3086	52546	52596	70045	70045					0.0805051310530871
WGSFPFFAMP	10	Unmodified	_WGSFPFFAMP_					0	0	0			REV__tr|A0A553SFC6|A0A553SFC6_NIACIMalonate-semialdehydedehydrogenaseOS=NialliacirculansOX=1397GN=iolAPE=3SV=1	REV__tr|A0A553SFC6|A0A553SFC6_NIACIMalonate-semialdehydedehydrogenaseOS=NialliacirculansOX=1397GN=iolAPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	593.8189086914062	2	593.773145	1185.53174	0.3346	0.00019868	-0.86715	-0.00051489	-0.53254	-0.00031621	594.273418848902	128.3	0.263	126.86	126.71	126.97	-1.4357					6	4	2	0	0	0	0.026939	1	12269	12269		24.203	0	1	7743.8	+		63695	29563	52547	52597	70046	70046					-0.05360697940523096
WGSLFLAVCL	10	Unmodified	_WGSLFLAVCL_					0	0	0		tr|A0A553SLR5|A0A553SLR5_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21175PE=4SV=1	tr|A0A553SLR5|A0A553SLR5_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21175PE=4SV=1	tr|A0A553SLR5|A0A553SLR5_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_21175PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	554.7978515625	2	554.79662	1107.57869	-1.2293	-0.00068202	2.7074	0.0015021	1.4781	0.00082004	554.7978766641985	117.1	2.2786	116.07	115.75	118.02	-1.0324					77	36	3	0	0	0	0.66721	1	8785	8785		34.173	2.2177	1	174560			63696	33755	52548	52598	70047	70047					0.029201616106320216
WGTEKEIE	8	Unmodified	_WGTEKEIE_					0	0	0		ENSG00000101639|ENST00000506447|CEP192	ENSG00000101639|ENST00000506447|CEP192	ENSG00000101639|ENST00000506447|CEP192	MULTI-MSMS	OvCa99_classI_Rep5	1	496.24456787109375	2	496.24019	990.465826	1.6174	0.00080261	4.2076	0.002088	5.825	0.0028906	496.24211194034984	106.88	0.98735	106.88	106.49	107.48	0					33	22	2	0	0	0	0.7224	1	12037	12037		38.806	3.6054	1	839140			63697	2192	52549	52599	70048	70048					-0.029788155817186635
WGTLCLSVN	9	Unmodified	_WGTLCLSVN_					0	0	0			REV__nc|ENSG00000100578|Q9BVV6-3|KIAA0586	REV__nc|ENSG00000100578|Q9BVV6-3|KIAA0586	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.2479553222656	2	496.747127	991.479702	-0.35243	-0.00017507	3.8218	0.0018985	3.4694	0.0017234	496.74905103651355	69.411	1.5093	69.411	69.019	70.528	0					89	36	4	0	0	0	0.027343	1	6586	6586		58.782	3.2778	1	22752000	+		63698	28768	52550	52600	70049	70049					-0.016378613542769926
WGTSFISTL	9	Unmodified	_WGTSFISTL_					0	0	0		ENST00000382895.7_2_4:1919982-1920018:+|nuORF	ENST00000382895.7_2_4:1919982-1920018:+|nuORF	ENST00000382895.7_2_4:1919982-1920018:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.3504333496094	2	506.260925	1010.5073	2.6055	0.0013191	2.6539	0.0013436	5.2594	0.0026626	506.26247726508035	94.127	0.50677	94.127	93.841	94.348	0					16	11	2	0	0	0	0.027462	1	10219	10219		23.042	0	1	295640			63699	11182	52551	52601	70050	70050					0.0024636517761109644
WGVGTFLRED	10	Unmodified	_WGVGTFLRED_					0	0	0			REV__ENST00000434095.2_1_9:131909782-131909935:+|nuORF	REV__ENST00000434095.2_1_9:131909782-131909935:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.3072509765625	2	590.293288	1178.57202	0.015881	9.3742E-06	-4.0362	-0.0023825	-4.0203	-0.0023731	590.2907894006204	64.691	0.69746	64.691	64.375	65.072	0					40	16	4	0	0	0	0.026802	1	5899	5899		51.335	19.806	1	624450	+		63700	25754	52552	52602	70051	70051					-0.01012060016387295
WGVGTFLRED	10	Unmodified	_WGVGTFLRED_					0	0	0			REV__ENST00000434095.2_1_9:131909782-131909935:+|nuORF	REV__ENST00000434095.2_1_9:131909782-131909935:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	590.293288	1178.57202	-0.39883	-0.00023543	-8.5993	-0.0050761	-8.9981	-0.0053115	590.7897946595137	66.972	0.49615	64.311	63.95	64.446	-2.661	-0.1903	-0.0049876	NaN	76.774	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11746	+		63701	25754	52552	52602							-0.01012060016387295
WGVKKNRVF	9	Unmodified	_WGVKKNRVF_					0	0	0			REV__ENST00000593704.1_1_19:35835757-35836128:+|nuORF	REV__ENST00000593704.1_1_19:35835757-35836128:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	567.329833984375	2	567.33255	1132.65055	-1.6483	-0.00093515	-3.3404	-0.0018951	-4.9888	-0.0028303	567.3305014697371	141.66	3.9446	141.43	139.35	143.3	-0.22697					200	79	3	0	0	0	0.6653	1	14165	14165		24.203	5.8783	1	83872	+		63702	27967	52553	52603	70052	70052					0.08952837079368692
WGVVVERR	8	Unmodified	_WGVVVERR_					0	0	0			REV__ENST00000310594.7_1_12:1755694-1755742:+|nuORF	REV__ENST00000310594.7_1_12:1755694-1755742:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	500.82525634765625	2	500.787976	999.561398	1.9748	0.00098897	-1.0968	-0.00054926	0.87805	0.00043972	500.78717311276023	82.187	0.67046	82.187	81.895	82.565	0					25	15	2	0	0	0	0.028476	1	8462	8462		8.8223	0	1	1312200	+		63703	24344	52554	52604	70053	70053					0.06160002119861474
WGWPVSPL	8	Unmodified	_WGWPVSPL_					0	0	0			REV__ENST00000424321.5_1_2:105371685-105371811:-|nuORF	REV__ENST00000424321.5_1_2:105371685-105371811:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	471.77239990234375	2	471.247621	940.480688	0.70723	0.00033328	-0.34654	-0.00016331	0.36069	0.00016997	471.2472351620622	64.954	0.91828	61.468	61.309	62.227	-3.4854					30	18	2	0	0	0	0.028476	1	4670	4670		62.978	35.096	1	151610	+		63704	25643	52555	52605	70054	70054					0.008067210769468147
WGWWKLYNKVK	11	Unmodified	_WGWWKLYNKVK_					0	0	0		nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.25738525390625	3	503.278473	1506.81359	-0.695	-0.00034978	1.0747	0.00054085	0.37965	0.00019107	503.6134320638849	68.041	0.39136	68.041	67.842	68.233	0					23	9	3	0	0	0	0.026145	1	6401	6401		17.833	13.19	1	461160			63705	14857	52556	52606	70055	70055					0.08045595410521855
WGWWKLYNKVK	11	Unmodified	_WGWWKLYNKVK_					0	0	0		nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	nc|ENSG00000002079|Q9H6N6|MYH16	MULTI-MATCH	OvCa9_classI_Rep2	2		3	503.278473	1506.81359	-0.36332	-0.00018285	-1.4154	-0.00071233	-1.7787	-0.00089518	503.2771644760383	70.536	0.5052	67.965	67.765	68.27	-2.5707	-0.038052	-0.0032035	NaN	17.833	17	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50167			63706	14857	52556	52606							0.08045595410521855
WHAGEIIK	8	Unmodified	_WHAGEIIK_					0	0	0		ENSG00000164296|ENST00000296736|TIGD6	ENSG00000164296|ENST00000296736|TIGD6	ENSG00000164296|ENST00000296736|TIGD6	MULTI-MSMS	OvCa9_classI_Rep2	2	477.2658386230469	2	477.263802	952.513051	0.3158	0.00015072	3.7454	0.0017876	4.0612	0.0019383	477.26556342485156	124.97	1.2358	124.74	124.37	125.6	-0.2359					42	24	2	0	0	0	0.64377	1	12167	12167		54.765	2.4655	1	116290			63707	6439	52557	52607	70056	70056					0.034895084799586584
WHFCLPVI	8	Unmodified	_WHFCLPVI_					0	0	0		ENST00000430097.2_1_20:5454736-5454826:+|nuORF	ENST00000430097.2_1_20:5454736-5454826:+|nuORF	ENST00000430097.2_1_20:5454736-5454826:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3036193847656	2	507.765123	1013.51569	0.074452	3.7804E-05	-4.1518	-0.0021082	-4.0774	-0.0020703	507.76295569748	115.3	1.2005	113.91	113.46	114.66	-1.3977					38	16	3	0	0	0	0.028476	1	10704	10704		54.895	8.9223	1	90494			63708	11783	52558	52608	70057	70057					0.009476406132307602
WHFHRYNYYRL	11	Unmodified	_WHFHRYNYYRL_					0	0	0			REV__ENST00000457379.1_1_2:50815958-50816216:-|nuORF	REV__ENST00000457379.1_1_2:50815958-50816216:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	552.2757568359375	3	552.272381	1653.79531	0.79393	0.00043847	2.7678	0.0015286	3.5618	0.0019671	552.6083079299328	153.34	1.3737	153.34	152.9	154.27	0					54	27	4	0	0	0	0.72573	1	17960	17960		6.001	4.4781	1	118270	+		63709	26044	52559	52609	70058	70058					-0.005431465114270395
WHGKPVPKERA	11	Unmodified	_WHGKPVPKERA_					0	0	0		ENSG00000151005|ENST00000280605|TKTL2	ENSG00000151005|ENST00000280605|TKTL2	ENSG00000151005|ENST00000280605|TKTL2	MULTI-MSMS	OvCa9_classI_Rep2	2	435.5767517089844	3	435.578923	1303.71494	-3.9701	-0.0017293	0.83068	0.00036182	-3.1395	-0.0013675	435.57922182732636	156.17	0.67278	155.94	155.7	156.37	-0.22696					41	19	3	0	0	0	0.72516	1	15905	15905		13.508	1.0751	1	23638			63710	5527	52560	52610	70059	70059					0.07522992165490905
WHGPKATGPI	10	Unmodified	_WHGPKATGPI_					0	0	0			REV__ENSG00000137975|ENST00000370565|CLCA2	REV__ENSG00000137975|ENST00000370565|CLCA2	MULTI-MSMS	OvCa9_classI_Rep2	2	532.2841186523438	2	532.287808	1062.56106	-4.5287	-0.0024106	-2.7397	-0.0014583	-7.2684	-0.0038689	532.2861235553668	152.16	0.83319	151.93	151.65	152.48	-0.22696					32	16	3	0	0	0	0.65434	1	15466	15466		35.618	6.4482	1	70988	+		63711	19498	52561	52611	70060	70060					0.03228582399970037
WHHLAVVVT	9	Unmodified	_WHHLAVVVT_					0	0	0		nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4;nc|ENSG00000128815|Q6ZS81-5|WDFY4	nc|ENSG00000128815|Q6ZS81-4|WDFY4	nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.2820434570312	2	531.298176	1060.5818	-4.7125	-0.0025037	1.174	0.00062377	-3.5384	-0.00188	531.2988651883762	153.11	0.61838	151.67	151.35	151.97	-1.435					25	12	3	0	0	0	0.027462	1	15175	15175		40.573	19.626	1	44415			63712	3905	52562	52612	70061	70061					0.05393172779645283
WHHLAVVVT	9	Unmodified	_WHHLAVVVT_					0	0	0		nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4;nc|ENSG00000128815|Q6ZS81-5|WDFY4	nc|ENSG00000128815|Q6ZS81-4|WDFY4	nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	531.298176	1060.5818	0.84042	0.00044651	-0.14441	-7.6725E-05	0.69601	0.00036979	531.298284847237	151.5	0.59395	151.5	151.15	151.74	0	-0.10251	-0.0011936	NaN	40.573	16	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49596			63713	3905	52562	52612							0.05393172779645283
WHHLAVVVT	9	Unmodified	_WHHLAVVVT_					0	0	0		nc|ENSG00000128815|Q6ZS81-4|WDFY4;ENSG00000128815|ENST00000325239|WDFY4;nc|ENSG00000128815|Q6ZS81-5|WDFY4	nc|ENSG00000128815|Q6ZS81-4|WDFY4	nc|ENSG00000128815|Q6ZS81-4|WDFY4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	531.298176	1060.5818	-4.8597	-0.002582	1.1227	0.00059651	-3.737	-0.0019854	531.2988594081178	152.61	0.55042	151.64	151.4	151.95	-0.97301	0.03452	0.00015285	NaN	40.573	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26768			63714	3905	52562	52612							0.05393172779645283
WHLIKLRKMVE	11	Unmodified	_WHLIKLRKMVE_					0	0	0		ENSG00000205832|ENST00000444310|C16orf96	ENSG00000205832|ENST00000444310|C16orf96	ENSG00000205832|ENST00000444310|C16orf96	MULTI-SECPEP	OvCa9_classI_Rep4_	4	485.77587890625	3	484.955113	1451.84351	0.47912	0.00023235	0.72415	0.00035118	1.2033	0.00058353	484.9553552858209	38.107	0.99043	35.181	35.007	35.997	-2.9264					35	19	3	0	0	0	0.02625	1	1487	1487		13.508	7.8092	1	105370			63715	9087	52563	52613	70062	70062					0.13566211084230417
WHLLQKLRTKY	11	Unmodified	_WHLLQKLRTKY_					0	0	0			REV__SBNO1|p.I493Sfs*4|1|0.03|ENSG00000139697|chr12:123327767-123327768|-/C|frameshift_variant	REV__SBNO1|p.I493Sfs*4|1|0.03|ENSG00000139697|chr12:123327767-123327768|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	495.9592590332031	3	495.961144	1484.8616	-6.9468	-0.0034453	2.0579	0.0010207	-4.8888	-0.0024247	495.96210445138047	163.05	2.2058	161.66	160.17	162.38	-1.3926					163	48	5	0	0	0	0.72548	1	14164	14164		9.2118	0.41249	1	227040	+		63716	19629	52564	52614	70063	70063					0.13856669330562
WHLLQKLRTKY	11	Unmodified	_WHLLQKLRTKY_					0	0	0			REV__SBNO1|p.I493Sfs*4|1|0.03|ENSG00000139697|chr12:123327767-123327768|-/C|frameshift_variant	REV__SBNO1|p.I493Sfs*4|1|0.03|ENSG00000139697|chr12:123327767-123327768|-/C|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.29425048828125	3	495.961144	1484.8616	-6.4865	-0.003217	1.6113	0.00079915	-4.8752	-0.0024179	495.96187478588956	163.63	1.693	161.99	160.63	162.32	-1.6336					149	48	4	0	0	0	0.72548	1	16083	16083		9.2118	0	1	106460	+		63717	19629	52564	52614	70064	70064					0.13856669330562
WHLPPIFP	8	Unmodified	_WHLPPIFP_					0	0	0			REV__nc|ENSG00000067182|P19438-4|TNFRSF1A	REV__nc|ENSG00000067182|P19438-4|TNFRSF1A	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.77734375	2	503.779088	1005.54362	-0.53642	-0.00027024	-0.063337	-3.1908E-05	-0.59975	-0.00030214	503.7788775374196	22.106	2.3664	20.768	19.646	22.013	-1.3386					123	57	3	0	0	0	0.7363	1	253	253		33.493	0	1	168480	+		63718	27275	52565	52615	70065	70065					0.041072868649848715
WHRWRPWLRSE	11	Unmodified	_WHRWRPWLRSE_					0	0	0			REV__ENST00000294753.8_1_1:247492143-247492663:-|nuORF	REV__ENST00000294753.8_1_1:247492143-247492663:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3021240234375	3	536.948009	1607.8222	-0.21402	-0.00011492	-3.4947	-0.0018765	-3.7087	-0.0019914	537.2812240746525	42.965	0.2173	42.965	42.796	43.014	0					6	4	2	0	0	0	0.026431	1	2792	2792		15.921	7.1213	1	35709	+		63719	24185	52566	52616	70066	70066					0.0425996209976347
WIAVLALIL	9	Unmodified	_WIAVLALIL_					0	0	0		tr|A0A553ST06|A0A553ST06_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_04175PE=3SV=1	tr|A0A553ST06|A0A553ST06_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_04175PE=3SV=1	tr|A0A553ST06|A0A553ST06_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_04175PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	506.3314208984375	2	506.333696	1010.65284	-0.48567	-0.00024591	-3.4639	-0.0017539	-3.9496	-0.0019998	506.33188661899624	122.71	0.88946	122.49	122.22	123.11	-0.21803					45	17	3	0	0	0	0.42921	1	11881	11881		49.211	0	1	120630			63720	34445	52567	52617	70067	70067					0.14793872764460048
WICALLLLF	9	Unmodified	_WICALLLLF_					0	0	0			REV__ENST00000358273.8_2_17:29701267-29701405:+|nuORF	REV__ENST00000358273.8_2_17:29701267-29701405:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.3355712890625	2	546.319731	1090.62491	0.51802	0.00028301	4.2797	0.0023381	4.7978	0.0026211	546.3219347616409	141.28	0.90393	141.28	140.98	141.88	0					49	17	4	0	0	0	0.027462	1	16548	16548		29.842	0	1	539320	+		63721	24796	52568	52618	70068	70068					0.08322226512723319
WIEPQDLL	8	Unmodified	_WIEPQDLL_					0	0	0			REV__ENST00000480548.5_1_1:67137634-67156055:+|nuORF	REV__ENST00000480548.5_1_1:67137634-67156055:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.8094177246094	2	507.26875	1012.52295	-0.97311	-0.00049363	-1.7198	-0.0008724	-2.6929	-0.001366	507.7692531690204	99.439	0.64679	98.609	98.169	98.816	-0.83051					16	12	2	0	0	0	0.028476	1	9081	9081		64.207	27.761	1	17591	+		63722	18398	52569	52619	70069	70069					0.017186516946708252
WIFALAILL	9	Unmodified	_WIFALAILL_					0	0	0		ENSG00000162645|ENST00000370466|GBP2;GBP2|p.S113F|1|0.37|ENSG00000162645|chr1:89120269-89120269|G/A|missense_variant	ENSG00000162645|ENST00000370466|GBP2	ENSG00000162645|ENST00000370466|GBP2	MULTI-SECPEP	OvCa9_classI_Rep3	3	529.8099975585938	2	530.333696	1058.65284	-0.47694	-0.00025294	-4.3868	-0.0023264	-4.8637	-0.0025794	530.3310528037775	81.416	1.2143	79.094	78.697	79.912	-2.3226					42	21	3	0	0	0	0.02744	1	4494	4494		49.211	11.399	1	82330			63723	6211	52570	52620	70070	70070					0.12585872764452688
WIFGIGALI	9	Unmodified	_WIFGIGALI_					0	0	0		tr|A0A553SJX3|A0A553SJX3_NIACIAminoacidtransporterOS=NialliacirculansOX=1397GN=CEQ21_17615PE=4SV=1	tr|A0A553SJX3|A0A553SJX3_NIACIAminoacidtransporterOS=NialliacirculansOX=1397GN=CEQ21_17615PE=4SV=1	tr|A0A553SJX3|A0A553SJX3_NIACIAminoacidtransporterOS=NialliacirculansOX=1397GN=CEQ21_17615PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	495.29217529296875	2	495.294571	988.574589	-2.3996	-0.0011885	-1.7387	-0.00086119	-4.1383	-0.0020497	495.29351246323944	141.08	0.78638	140.05	139.82	140.61	-1.0339					29	15	3	0	0	0	0.53728	1	11648	11648		39.021	1.993	1	55165			63724	33548	52571	52621	70071	70071					0.07984440179245667
WIGLYRHFL	9	Unmodified	_WIGLYRHFL_					0	0	0		ENSG00000174839|ENST00000311128|DENND6A	ENSG00000174839|ENST00000311128|DENND6A	ENSG00000174839|ENST00000311128|DENND6A	MULTI-MSMS	OvCa99_classI_Rep5	1	602.8202514648438	2	602.834926	1203.6553	0.3574	0.00021546	-4.1358	-0.0024932	-3.7784	-0.0022778	602.8325012298135	20.95	0.23787	20.95	20.823	21.061	0					7	4	2	0	0	0	0.65476	1	78	78		25.45	0.93098	1	40754			63725	7495	52572	52622	70072	70072					0.06161721222133565
WIHLLKPLVH	10	Unmodified	_WIHLLKPLVH_					0	0	0		ENST00000486274.5_1_3:99980342-100042509:+|nuORF;nc|ENSG00000036054|Q9NUY8-2|TBC1D23;ENSG00000036054|ENST00000394144|TBC1D23;ENST00000484231.1_1_3:99998514-100002656:+|nuORF;TBC1D23-C3orf26|1|fusion;TBC1D23-C3orf26|2|fusion	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	ENST00000486274.5_1_3:99980342-100042509:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	628.38134765625	2	628.387326	1254.7601	-4.0511	-0.0025457	-3.5953	-0.0022592	-7.6464	-0.0048049	628.3849132400738	150.53	4.7174	149.58	148	152.71	-0.95647					178	94	2	0	0	0	0.77039	1	12913	12913		11.511	0	1	419100			63726	1086	52573	52623	70073	70073					0.1429084269868781
WIIEKTEKNT	10	Unmodified	_WIIEKTEKNT_					0	0	0			REV__tr|A0A7D6ZIV8|A0A7D6ZIV8_9CLOTL,D-transpeptidase/peptidoglycanbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08680PE=4SV=1	REV__tr|A0A7D6ZIV8|A0A7D6ZIV8_9CLOTL,D-transpeptidase/peptidoglycanbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08680PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	631.3432006835938	2	631.342978	1260.6714	-0.21268	-0.00013427	0.52592	0.00033203	0.31324	0.00019776	631.8446447827793	25.075	2.5573	25.075	24.486	27.043	0					102	50	3	0	0	0	0.79213	1	492	492		19.997	2.5288	1	159290	+		63727	32071	52574	52624	70074	70074					0.051493378777195176
WIIHKIPLM	9	Unmodified	_WIIHKIPLM_					0	0	0		ENST00000454679.6_2_10:19569053-19613005:+|nuORF	ENST00000454679.6_2_10:19569053-19613005:+|nuORF	ENST00000454679.6_2_10:19569053-19613005:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	575.8430786132812	2	575.843905	1149.67326	-4.018	-0.0023138	2.7228	0.0015679	-1.2952	-0.00074586	575.8453002405098	145.22	4.8748	144.25	142.7	147.58	-0.97299					318	97	5	0	0	0	0.65476	1	12126	12126		25.45	3.4903	1	445630			63728	12089	52575	52625	70075	70075					0.10440720152610083
WIIHKIPLM	9	Unmodified	_WIIHKIPLM_					0	0	0		ENST00000454679.6_2_10:19569053-19613005:+|nuORF	ENST00000454679.6_2_10:19569053-19613005:+|nuORF	ENST00000454679.6_2_10:19569053-19613005:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8434448242188	2	575.843905	1149.67326	-1.5734	-0.00090602	0.46638	0.00026856	-1.107	-0.00063746	575.8439449675558	145.55	4.7888	144.12	142.78	147.57	-1.4357					360	93	6	0	0	0	0.64339	1	14252	14252		26.796	1.222	1	565210			63729	12089	52575	52625	70076	70076					0.10440720152610083
WIKIGAKHLAE	11	Unmodified	_WIKIGAKHLAE_					0	0	0			REV__ENSG00000145246|ENST00000273859|ATP10D	REV__ENSG00000145246|ENST00000273859|ATP10D	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3654174804688	2	633.371872	1264.72919	-3.894	-0.0024663	-0.37753	-0.00023912	-4.2715	-0.0027055	633.3715080583703	149.82	2.9263	149.6	148.42	151.35	-0.22696					170	58	4	0	0	0	0.71191	1	15250	15250		25.574	7.312	1	116220	+		63730	19957	52576	52626	70077	70077					0.10741644593827004
WIKIGAKHLAE	11	Unmodified	_WIKIGAKHLAE_					0	0	0			REV__ENSG00000145246|ENST00000273859|ATP10D	REV__ENSG00000145246|ENST00000273859|ATP10D	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3694458007812	2	633.371872	1264.72919	-4.5141	-0.0028591	0.26314	0.00016666	-4.251	-0.0026925	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.71191	1	15469	15469		25.574	0	1	369460	+		63731	19957	52576	52626	70078	70078					0.10741644593827004
WIKLFRNLYKL	11	Unmodified	_WIKLFRNLYKL_					0	0	0			REV__ENST00000494268.1_1_X:11778342-11782058:+|nuORF	REV__ENST00000494268.1_1_X:11778342-11782058:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.7646179199219	3	498.63789	1492.89184	-0.48111	-0.0002399	2.9926	0.0014922	2.5115	0.0012523	498.6393091419244	29.533	0.64773	29.533	29.288	29.935	0					32	12	4	0	0	0	0.026505	1	1090	1090		5.6988	0	1	131360	+		63732	26721	52577	52627	70079	70079					0.1651102799578439
WILALAVLN	9	Unmodified	_WILALAVLN_					0	0	0		ENSG00000125910|ENST00000246115|S1PR4	ENSG00000125910|ENST00000246115|S1PR4	ENSG00000125910|ENST00000246115|S1PR4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.83465576171875	2	506.813128	1011.6117	-1.4124	-0.00071582	-2.546	-0.0012904	-3.9584	-0.0020062	506.81176594299706	88.815	0.74062	86.212	85.984	86.725	-2.6027					40	14	3	0	0	0	0.027462	1	7618	7618		46.766	0	1	174140			63733	3754	52578	52628	70080	70080					0.10636111725000319
WILALAVLN	9	Unmodified	_WILALAVLN_					0	0	0		ENSG00000125910|ENST00000246115|S1PR4	ENSG00000125910|ENST00000246115|S1PR4	ENSG00000125910|ENST00000246115|S1PR4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	506.813128	1011.6117	1.1965	0.00060639	-4.916	-0.0024915	-3.7195	-0.0018851	506.81045772531	87.647	0.73597	86.216	85.94	86.676	-1.4311	-0.0066639	-0.0016272	NaN	46.766	43	14	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105980			63734	3754	52578	52628							0.10636111725000319
WILALAVLN	9	Unmodified	_WILALAVLN_					0	0	0		ENSG00000125910|ENST00000246115|S1PR4	ENSG00000125910|ENST00000246115|S1PR4	ENSG00000125910|ENST00000246115|S1PR4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	506.813128	1011.6117	-0.9462	-0.00047955	-2.801	-0.0014196	-3.7472	-0.0018991	506.81161506167695	88.37	0.79263	86.239	85.957	86.75	-2.1309	0.017074	0.00051669	NaN	46.766	41	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	213630			63735	3754	52578	52628							0.10636111725000319
WILRVFIL	8	Unmodified	_WILRVFIL_					0	0	0			REV__ENST00000459961.1_1_1:15653545-15655159:+|nuORF	REV__ENST00000459961.1_1_1:15653545-15655159:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	529.7822875976562	2	530.339313	1058.66407	-1.7898	-0.00094922	-3.8994	-0.002068	-5.6893	-0.0030172	530.3377032954922	100.88	0.64531	100.11	99.823	100.47	-0.76401					22	12	2	0	0	0	0.028476	1	9211	9211		40.573	0	1	25426	+		63736	26072	52579	52629	70081	70081					0.13708694858610215
WIMIALAL	8	Unmodified	_WIMIALAL_					0	0	0		ENSG00000182220|ENST00000636580|ATP6AP2;nc|ENSG00000182220|O75787-2|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2;nc|ENSG00000182220|O75787-2|ATP6AP2	ENSG00000182220|ENST00000636580|ATP6AP2	MULTI-MSMS	OvCa9_classI_Rep3	3	465.7768249511719	2	465.777699	929.540846	0.46452	0.00021637	-0.74751	-0.00034817	-0.28298	-0.00013181	465.77725540268585	129.01	4.2949	127.92	126.97	131.27	-1.0933					136	86	2	0	0	0	0.7363	1	10406	10406		33.493	0	1	27077			63737	7982;15208	52580	52630	70082	70082					0.07325695415806877
WIPGSRLQPVL	11	Unmodified	_WIPGSRLQPVL_					0	0	0		ENST00000556874.1_1_14:66975812-66976097:-|nuORF	ENST00000556874.1_1_14:66975812-66976097:-|nuORF	ENST00000556874.1_1_14:66975812-66976097:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3683471679688	2	633.371872	1264.72919	-4.1446	-0.0026251	-0.18183	-0.00011517	-4.3265	-0.0027403	633.3716506579397	149.94	3.0119	148.99	147.85	150.86	-0.9512					218	59	5	0	0	0	0.72485	1	12811	12811		17.468	1.4612	1	281260			63738	13674	52581	52631	70083	70083					0.10741644593804267
WIPSSWCSL	9	Unmodified	_WIPSSWCSL_					0	0	0		nc|ENSG00000174564|Q6UXL0-3|IL20RB;ENST00000469964.5_1_3:136699276-136714306:+|nuORF;ENSG00000174564|ENST00000329582|IL20RB;NCK1-IL20RB|4|fusion	nc|ENSG00000174564|Q6UXL0-3|IL20RB	nc|ENSG00000174564|Q6UXL0-3|IL20RB	MULTI-SECPEP	OvCa9_classI_Rep2	2	540.3080444335938	2	539.754953	1077.49535	-2.2194	-0.0011979	-1.9831	-0.0010704	-4.2025	-0.0022683	539.7540504911477	118.68	0.49821	118.53	118.38	118.88	-0.14755					12	9	2	0	0	0	0.027462	1	11382	11382		23.042	0	1	8803.2			63739	7475	52582	52632	70084	70084					-0.04029574837204564
WIQKKDLMM	9	Unmodified	_WIQKKDLMM_					0	0	0			REV__ENST00000424349.1_1_3:14987584-14988660:-|nuORF	REV__ENST00000424349.1_1_3:14987584-14988660:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	596.8150024414062	2	596.814487	1191.61442	3.1335	0.0018701	-0.048399	-2.8885E-05	3.0851	0.0018412	596.8143723057162	57.305	2.9299	54.154	53.228	56.158	-3.1504					108	83	2	0	0	0	0.68424	1	1680	1680		21.96	1.9631	1	40554	+		63740	25644	52583	52633	70085	70085					0.026278757959744325
WIRERLQKTRM	11	Unmodified	_WIRERLQKTRM_					0	0	0			REV__nc|ENSG00000226288|Q8NH67|OR52I2	REV__nc|ENSG00000226288|Q8NH67|OR52I2	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.3119812011719	3	506.289155	1515.84564	-2.36	-0.0011948	4.0378	0.0020443	1.6779	0.00084948	506.2906135063499	35.235	0.34481	32.525	32.356	32.701	-2.7097					10	6	2	0	0	0	0.026416	1	1398	1398		16.53	7.3181	1	7759.3	+		63741	23369	52584	52634	70086	70086					0.10834639822019199
WIRKSRSP	8	Unmodified	_WIRKSRSP_					0	0	0		ENST00000448276.6_1_17:61919994-61920252:-|nuORF	ENST00000448276.6_1_17:61919994-61920252:-|nuORF	ENST00000448276.6_1_17:61919994-61920252:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	515.3003540039062	2	515.30125	1028.58795	0.83581	0.00043069	-2.0603	-0.0010617	-1.2245	-0.00063098	515.299976511872	104.08	1.3531	102.65	102.39	103.75	-1.4347					65	25	3	0	0	0	0.66704	1	7242	7242		50.025	0	1	459290			63742	12016	52585	52635	70087	70087					0.0747969101118997
WIRLPQLN	8	Unmodified	_WIRLPQLN_					0	0	0			REV__ENST00000262519.13_2_16:30968803-30969046:+|nuORF	REV__ENST00000262519.13_2_16:30968803-30969046:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	520.3046264648438	2	520.306001	1038.59745	-4.8818	-0.0025401	3.3819	0.0017596	-1.4999	-0.0007804	520.3076056055337	152.59	1.7718	151.62	150.74	152.51	-0.97301					83	35	4	0	0	0	0.60486	1	13045	13045		62.978	2.6845	1	460690	+		63743	23978	52586	52636	70088	70088					0.07969459296714376
WIRNLIRATL	10	Unmodified	_WIRNLIRATL_					0	0	0		ENST00000546949.5_1_19:58514261-58515786:+|nuORF;ENST00000550135.5_1_19:58514063-58517364:+|nuORF	ENST00000546949.5_1_19:58514261-58515786:+|nuORF	ENST00000546949.5_1_19:58514261-58515786:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	628.3828125	2	628.385314	1254.75608	-4.0512	-0.0025457	-0.39444	-0.00024786	-4.4456	-0.0027935	628.3849132400738	150.53	4.7174	149.58	148	152.71	-0.95647					178	94	2	0	0	0	0.74374	1	12799	12799		25.574	2.0514	1	419100			63744	13541	52587	52637	70089	70089					0.13888753204969362
WISFDELVN	9	Unmodified	_WISFDELVN_					0	0	0			REV__ENSG00000134007|ENST00000256389|ADAM20	REV__ENSG00000134007|ENST00000256389|ADAM20	MULTI-MSMS	OvCa9_classI_Rep3	3	561.7791748046875	2	561.776939	1121.53933	-1.3592	-0.00076357	4.1065	0.002307	2.7473	0.0015434	561.7792444049404	136.22	0.83698	135.12	134.85	135.69	-1.1076					32	16	3	0	0	0	0.56889	1	11052	11052		35.618	2.8059	1	51102	+		63745	19168	52588	52638	70090	70090					-0.016582671392370685
WISLSKYSFL	10	Unmodified	_WISLSKYSFL_					0	0	0		ENST00000559889.5_1_15:78449787-78454580:+|nuORF	ENST00000559889.5_1_15:78449787-78454580:+|nuORF	ENST00000559889.5_1_15:78449787-78454580:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	622.3362426757812	2	622.339707	1242.66486	-4.541	-0.002826	-0.52977	-0.00032969	-5.0707	-0.0031557	622.3392173202388	154.08	1.2081	153.07	152.74	153.95	-1.0076					67	24	4	0	0	0	0.78463	1	13225	13225		20.947	0.95016	1	199770			63746	13725	52589	52639	70091	70091					0.05323444716987069
WITRIRPELV	10	Unmodified	_WITRIRPELV_					0	0	0		ENSG00000131042|ENST00000314446|LILRB2;nc|ENSG00000131042|Q8N423-1|LILRB2;nc|ENSG00000131042|Q8N423-3|LILRB2	ENSG00000131042|ENST00000314446|LILRB2	ENSG00000131042|ENST00000314446|LILRB2	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8826904296875	2	641.885147	1281.75574	-4.6434	-0.0029805	0.6524	0.00041876	-3.991	-0.0025618	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.79213	1	15409	15409		19.997	0	1	543390			63747	4040	52590	52640	70092	70092					0.12613333485114708
WIVPLTLSGLL	11	Unmodified	_WIVPLTLSGLL_					0	0	0		nc|ENSG00000179915|P58400-1|NRXN1;nc|ENSG00000179915|P58400|NRXN1	nc|ENSG00000179915|P58400-1|NRXN1	nc|ENSG00000179915|P58400-1|NRXN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3731689453125	2	606.373549	1210.73255	-3.1199	-0.0018918	-3.0665	-0.0018595	-6.1865	-0.0037513	606.3716138370278	152.89	1.1168	151.46	150.94	152.06	-1.4351					53	25	3	0	0	0	0.72466	1	15152	15152		19.997	2.5288	1	47625			63748	15203	52591	52641	70093	70093					0.13560894647821442
WIVPLTLSGLL	11	Unmodified	_WIVPLTLSGLL_					0	0	0		nc|ENSG00000179915|P58400-1|NRXN1;nc|ENSG00000179915|P58400|NRXN1	nc|ENSG00000179915|P58400-1|NRXN1	nc|ENSG00000179915|P58400-1|NRXN1	MULTI-MATCH	OvCa99_classI_Rep5	1		2	606.373549	1210.73255	1.0562	0.00064045	-5.8805	-0.0035658	-4.8243	-0.0029253	606.3694296330589	151.47	0.70799	151.47	150.94	151.65	0	0.03226	-0.0034108	NaN	19.997	19	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33198			63749	15203	52591	52641							0.13560894647821442
WIVPLTLSGLL	11	Unmodified	_WIVPLTLSGLL_					0	0	0		nc|ENSG00000179915|P58400-1|NRXN1;nc|ENSG00000179915|P58400|NRXN1	nc|ENSG00000179915|P58400-1|NRXN1	nc|ENSG00000179915|P58400-1|NRXN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	606.373549	1210.73255	-3.8347	-0.0023253	-2.2837	-0.0013848	-6.1184	-0.00371	606.3721088392675	151.52	0.80539	151.3	150.89	151.7	-0.22697	-0.1429	0.00095123	NaN	19.997	24	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13783			63750	15203	52591	52641							0.13560894647821442
WIVPLTLSGLL	11	Unmodified	_WIVPLTLSGLL_					0	0	0		nc|ENSG00000179915|P58400-1|NRXN1;nc|ENSG00000179915|P58400|NRXN1	nc|ENSG00000179915|P58400-1|NRXN1	nc|ENSG00000179915|P58400-1|NRXN1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	606.373549	1210.73255	-3.2871	-0.0019932	-3.0721	-0.0018629	-6.3592	-0.0038561	606.371808578007	152.51	0.95517	151.53	150.99	151.95	-0.97299	0.094012	-4.9873E-06	NaN	19.997	26	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13692			63751	15203	52591	52641							0.13560894647821442
WKDYHLAL	8	Unmodified	_WKDYHLAL_					0	0	0		nc|ENSG00000147364|Q8TCJ0|FBXO25;ENST00000519376.5_1_8:408371-417959:+|nuORF	nc|ENSG00000147364|Q8TCJ0|FBXO25	nc|ENSG00000147364|Q8TCJ0|FBXO25	MULTI-SECPEP	OvCa9_classI_Rep4_	4	522.737060546875	2	523.276909	1044.53927	-0.35953	-0.00018813	-1.5205	-0.00079566	-1.8801	-0.00098379	523.2760399557435	61.784	0.56148	58.327	58.057	58.618	-3.4577					24	11	3	0	0	0	0.028476	1	4241	4241		51.335	7.2187	1	66930			63752	15079	52592	52642	70094	70094					0.018777776514070865
WKEFINSL	8	Unmodified	_WKEFINSL_					0	0	0		tr|A0A7D6VSB0|A0A7D6VSB0_9CLOTSMI1/KNR4familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12105PE=4SV=1	tr|A0A7D6VSB0|A0A7D6VSB0_9CLOTSMI1/KNR4familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12105PE=4SV=1	tr|A0A7D6VSB0|A0A7D6VSB0_9CLOTSMI1/KNR4familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12105PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.7755126953125	2	518.776742	1035.53893	-1.0421	-0.00054064	-2.7136	-0.0014077	-3.7557	-0.0019484	518.7751606740917	69.518	1.1717	66.037	65.762	66.934	-3.4812					59	23	3	0	0	0	0.40148	1	5207	5207		87.754	0.057861	1	643580			63753	35008	52593	52643	70095	70095					0.022583579315551106
WKEKIWRRYDI	11	Unmodified	_WKEKIWRRYDI_					0	0	0			REV__ENST00000505457.1_1_5:6749703-6750667:+|nuORF	REV__ENST00000505457.1_1_5:6749703-6750667:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.7705688476562	3	531.628054	1591.86233	3.3561	0.0017842	0.020106	1.0689E-05	3.3762	0.0017949	531.6280323443315	88.529	0.5446	88.529	88.298	88.843	0					23	12	2	0	0	0	0.026448	1	9455	9455		13.508	3.404	1	3313100	+		63754	18127	52594	52644	70096	70096					0.0900746397965122
WKELKLVYKRR	11	Unmodified	_WKELKLVYKRR_					0	0	0		ENST00000444408.1_1_2:224640835-224702600:-|nuORF	ENST00000444408.1_1_2:224640835-224702600:-|nuORF	ENST00000444408.1_1_2:224640835-224702600:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	507.3117980957031	3	506.980427	1517.91945	-5.2644	-0.0026689	1.4564	0.00073836	-3.808	-0.0019306	507.3144724038786	162.82	0.28682	162.59	162.35	162.64	-0.22696					8	5	2	0	0	0	0.72548	1	16573	16573		9.2118	2.8909	1	68129			63755	11956	52595	52645	70097	70097					0.18120931255975847
WKFKPKELARR	11	Unmodified	_WKFKPKELARR_					0	0	0		nc|ENSG00000078177|Q86UW6-2|N4BP2;ENSG00000078177|ENST00000261435|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	nc|ENSG00000078177|Q86UW6-2|N4BP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	486.9587707519531	3	486.961256	1457.86194	-6.3941	-0.0031137	1.5633	0.00076127	-4.8308	-0.0023524	486.96182500070705	161.6	3.2719	159.97	158.36	161.63	-1.6239					171	80	4	0	0	0	0.72483	1	15963	15963		17.833	1.3033	1	99720			63756	1589	52596	52646	70098	70098					0.1513208905043939
WKFQVEPD	8	Unmodified	_WKFQVEPD_					0	0	0			REV__nc|ENSG00000211897|P01860-1|IGHG3	REV__nc|ENSG00000211897|P01860-1|IGHG3	MULTI-SECPEP	OvCa9_classI_Rep3	3	524.7930908203125	2	524.758549	1047.50255	-0.98007	-0.0005143	0.35819	0.00018797	-0.62187	-0.00032633	524.7588932282512	77.974	1.0515	75.621	75.402	76.453	-2.3527					24	20	2	0	0	0	0.028476	1	4147	4147		55.504	4.3115	1	41600	+		63757	29125	52597	52647	70099	70099					-0.019305189651277033
WKGHVGQDRVD	11	Unmodified	_WKGHVGQDRVD_					0	0	0		SEMA7A|p.F449Sfs*25|1|0.11|ENSG00000138623|chr15:74411961-74411962|-/G|frameshift_variant;nc|ENSG00000138623|O75326-2|SEMA7A;ENSG00000138623|ENST00000261918|SEMA7A	SEMA7A|p.F449Sfs*25|1|0.11|ENSG00000138623|chr15:74411961-74411962|-/G|frameshift_variant	SEMA7A|p.F449Sfs*25|1|0.11|ENSG00000138623|chr15:74411961-74411962|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	433.6002502441406	3	432.886304	1295.63708	-5.6938	-0.0024648	1.3632	0.00059013	-4.3306	-0.0018747	432.8877424586301	162.52	1.179	160.89	160.05	161.23	-1.6239					40	30	2	0	0	0	0.026277	1	16021	16021		17.833	0.6664	1	10188			63758	4699	52598	52648	70100	70100					0.0010893450944422511
WKHIKTEPH	9	Unmodified	_WKHIKTEPH_					0	0	0		L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|126|3|sense	L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|126|3|sense	L1PB1_dup732|chr1:227528334-227533261:-|1.5253327879556793|0.4841042275833316|1.66|429.0|126|3|sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	588.3192138671875	2	588.31964	1174.62473	-0.14986	-8.8168E-05	-4.3422	-0.0025546	-4.4921	-0.0026428	588.3171667010001	47.453	2.2552	44.346	43.978	46.233	-3.1077					150	43	5	0	0	0	0.42676	2	2601	2601;2625		49.442	1.7842	1	4526700			63759	14781	52599	52649	70101;70102	70101					0.044399428370979876
WKHLTGTLIL	10	Unmodified	_WKHLTGTLIL_					0	0	0		ENSG00000130147|ENST00000392011|SH3BP4;nc|ENSG00000130147|Q9P0V3-2|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	ENSG00000130147|ENST00000392011|SH3BP4	MULTI-MSMS	OvCa9_classI_Rep3	3	591.3609619140625	2	591.355691	1180.69683	-0.18923	-0.0001119	3.5193	0.0020812	3.3301	0.0019693	591.3562587131781	130	2.1652	128.88	128.64	130.8	-1.1121					72	43	3	0	0	0	0.62299	1	10295	10295		39.253	2.8061	1	89398			63760	3957	52600	52650	70103	70103					0.11370857190809147
WKKRRKKKKK	10	Unmodified	_WKKRRKKKKK_					0	0	0			REV__ENST00000439685.6_1_3:112358751-112359896:-|nuORF	REV__ENST00000439685.6_1_3:112358751-112359896:-|nuORF	MSMS	OvCa99_classI_Rep5	1	471.99298095703125	3	471.99289	1412.95684	NaN	NaN	NaN	NaN	NaN	NaN	NaN	28.258	1	28.258	27.758	28.758	0								0	0	0	0.28031	1	908	908		4.3388	0.9301	1		+		63761	25824	52601	52651	70104	70104					0.2668806731226141
WKKTSKPMK	9	Unmodified	_WKKTSKPMK_					0	0	0			REV__ENSG00000179954|ENST00000389623|SSC5D	REV__ENSG00000179954|ENST00000389623|SSC5D	MULTI-MSMS	OvCa9_classI_Rep2	2	567.3297729492188	2	567.328619	1132.64269	-2.3399	-0.0013275	4.3821	0.0024861	2.0422	0.0011586	567.3309997285655	144.81	5.1159	144.58	143	148.12	-0.22696					280	102	5	0	0	0	0.62352	1	14752	14752		29.15	8.2026	1	241060	+		63762	22149	52602	52652	70105	70105					0.08166941767581193
WKLEDKVKGA	10	Unmodified	_WKLEDKVKGA_					0	0	0		ENST00000557401.5_1_14:75158793-75158889:-|nuORF	ENST00000557401.5_1_14:75158793-75158889:-|nuORF	ENST00000557401.5_1_14:75158793-75158889:-|nuORF	MSMS	OvCa99_classI_Rep5	1	587.3345336914062	2	587.334956	1172.65536	NaN	NaN	NaN	NaN	NaN	NaN	NaN	24.054	1	24.054	23.554	24.554	0								0	0	0	0.14375	1	404	404		19.104	3.4617	1				63763	13684	52603	52653	70106	70106					0.07593676431451968
WKLNIADI	8	Unmodified	_WKLNIADI_					0	0	0		ENST00000463254.1_1_2:166615181-166618484:-|nuORF	ENST00000463254.1_1_2:166615181-166618484:-|nuORF	ENST00000463254.1_1_2:166615181-166618484:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	486.7825012207031	2	486.779285	971.544017	3.0742	0.0014964	4.4737	0.0021777	7.5479	0.0036741	486.7814152541512	88.023	0.88293	88.023	87.754	88.637	0					69	20	6	0	0	0	0.33245	1	9341	9341		101.21	8.0161	1	9851800			63764	12221	52604	52654	70107	70107					0.05710661794171301
WKLVKFHQM	9	Unmodified	_WKLVKFHQM_					0	0	0		ENST00000557001.5_1_14:52037074-52042621:+|nuORF	ENST00000557001.5_1_14:52037074-52042621:+|nuORF	ENST00000557001.5_1_14:52037074-52042621:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	608.3887329101562	2	608.836611	1215.65867	1.331	0.00081036	1.0048	0.00061174	2.3358	0.0014221	609.3388095321012	143.71	1.873	143.71	142.23	144.11	0					55	37	2	0	0	0	0.027462	1	16822	16822		38.806	13.232	1	39540			63765	13678	52605	52655	70108	70108					0.05946648004464805
WKPGELVLLGR	11	Unmodified	_WKPGELVLLGR_					0	0	0			REV__nc|ENSG00000142973|P13584|CYP4B1	REV__nc|ENSG00000142973|P13584|CYP4B1	MULTI-MSMS	OvCa9_classI_Rep2	2	634.3768310546875	2	634.379697	1266.74484	-5.7659	-0.0036578	3.1969	0.0020281	-2.569	-0.0016297	634.3814892688545	163.56	1.4089	163.33	162.75	164.16	-0.22696					114	47	3	0	0	0	0.71789	1	16686	16686		23.523	2.5758	1	320930	+		63766	19810	52606	52656	70109	70109					0.12213931110841258
WKPVPFEKLNE	11	Unmodified	_WKPVPFEKLNE_					0	0	0			REV__nc|ENSG00000186409|Q5VVM6-2|CCDC30	REV__nc|ENSG00000186409|Q5VVM6-2|CCDC30	MULTI-SECPEP	OvCa9_classI_Rep2	2	462.93658447265625	3	462.918722	1385.73434	0.1867	8.6429E-05	2.6249	0.0012151	2.8116	0.0013015	462.9198787098576	44.237	0.49881	41.527	41.452	41.951	-2.7097					18	9	3	0	0	0	0.025258	1	2529	2529		62.166	28.08	1	44242	+		63767	22580	52607	52657	70110	70110					0.05689903665756901
WKQIVRDYREE	11	Unmodified	_WKQIVRDYREE_					0	0	0			REV__tr|A0A7D6VP67|A0A7D6VP67_9CLOTDNA-directedRNApolymerasesubunitbeta'OS=ClostridiumintestinaleOX=36845GN=rpoCPE=3SV=1	REV__tr|A0A7D6VP67|A0A7D6VP67_9CLOTDNA-directedRNApolymerasesubunitbeta'OS=ClostridiumintestinaleOX=36845GN=rpoCPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.78326416015625	3	507.931802	1520.77358	-0.9857	-0.00050067	3.5416	0.0017989	2.5559	0.0012982	507.93300620310185	81.659	0.65169	79.336	79.057	79.708	-2.3226					15	12	2	0	0	0	0.026345	1	4527	4527		21.032	6.9462	1	27283	+		63768	31232	52608	52658	70111	70111					0.034020039493270815
WKRFANQG	8	Unmodified	_WKRFANQG_					0	0	0			REV__ENST00000398146.3_2_2:88093672-88094688:-|nuORF	REV__ENST00000398146.3_2_2:88093672-88094688:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	503.7628479003906	2	503.764501	1005.51445	-0.34948	-0.00017605	-1.1	-0.00055415	-1.4495	-0.0007302	503.76399167741886	92.972	1.6529	91.804	91.341	92.994	-1.168					87	31	4	0	0	0	0.67745	1	8315	8315		47.916	3.7988	1	676190	+		63769	25373	52609	52659	70112	70112					0.011911425687117116
WKTQVLLS	8	Unmodified	_WKTQVLLS_					0	0	0			REV__ENST00000436852.2_1_X:121673097-121673310:+|nuORF	REV__ENST00000436852.2_1_X:121673097-121673310:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	487.7898864746094	2	487.78711	973.559667	3.5562	0.0017347	2.7211	0.0013273	6.2773	0.003062	487.7882512057077	132.82	4.8462	131.32	130.38	135.22	-1.5015					236	97	4	0	0	0	0.68714	1	12763	12763		45.952	5.1738	1	143240	+		63770	25787	52610	52660	70113	70113					0.0718294831123103
WKVRDIYDFFK	11	Unmodified	_WKVRDIYDFFK_					0	0	0			REV__ENSG00000164023|ENST00000690982|SGMS2	REV__ENSG00000164023|ENST00000690982|SGMS2	MULTI-SECPEP	OvCa9_classI_Rep3	3	505.8209533691406	3	506.269755	1515.78744	0.16012	8.1063E-05	-4.4327	-0.0022441	-4.2726	-0.0021631	506.26762250078457	68.727	1.3484	65.913	65.813	67.161	-2.8144					32	26	2	0	0	0	0.026345	1	3122	3122		15.921	2.4127	1	105140	+		63771	20922	52611	52661	70114	70114					0.05017281448385802
WKYITTESQI	10	Unmodified	_WKYITTESQI_					0	0	0			REV__L1MB7_dup1945|chr2:26113582-26114608:+|1.9674544307732185|0.2937903993333884|2.74|429.0|3|1|sense	REV__L1MB7_dup1945|chr2:26113582-26114608:+|1.9674544307732185|0.2937903993333884|2.74|429.0|3|1|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	423.5550231933594	3	423.555561	1267.64485	-0.40504	-0.00017156	-1.7553	-0.00074348	-2.1604	-0.00091504	423.554776260944	41.74	0.73672	41.74	41.462	42.199	0					42	16	4	0	0	0	0.54579	1	2627	2627		48.602	1.3739	1	1460100	+		63772	28418	52612	52662	70115	70115					0.021736489863542374
WKYITTESQI	10	Unmodified	_WKYITTESQI_					0	0	0			REV__L1MB7_dup1945|chr2:26113582-26114608:+|1.9674544307732185|0.2937903993333884|2.74|429.0|3|1|sense	REV__L1MB7_dup1945|chr2:26113582-26114608:+|1.9674544307732185|0.2937903993333884|2.74|429.0|3|1|sense	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	423.555561	1267.64485	-1.1544	-0.00048896	-9.1313	-0.0038676	-10.286	-0.0043566	423.5525328070238	45.166	0.20702	42.128	41.971	42.178	-3.0385	0.19369	-0.0092573	NaN	48.602	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2547.4	+		63773	28418	52612	52662							0.021736489863542374
WKYNEFYHVKT	11	Unmodified	_WKYNEFYHVKT_					0	0	0		ROS1|p.T1963Dfs*18|1|0.07|ENSG00000047936|chr6:117319921-117319922|-/GGCATGTTTGAAGAAAAATGATTGCCTGATAGGTC|frameshift_variant;ENSG00000047936|ENST00000368507|ROS1;nc|ENSG00000047936|P08922|ROS1	ROS1|p.T1963Dfs*18|1|0.07|ENSG00000047936|chr6:117319921-117319922|-/GGCATGTTTGAAGAAAAATGATTGCCTGATAGGTC|frameshift_variant	ROS1|p.T1963Dfs*18|1|0.07|ENSG00000047936|chr6:117319921-117319922|-/GGCATGTTTGAAGAAAAATGATTGCCTGATAGGTC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.7994079589844	3	505.585743	1513.7354	-0.30699	-0.00015521	-0.68788	-0.00034778	-0.99487	-0.00050299	505.5852347143155	35.783	0.27747	35.783	35.707	35.984	0					9	5	3	0	0	0	0.026302	1	1858	1858		17.167	1.16	1	25295			63774	1153	52613	52663	70116	70116					-0.000918819653634273
WKYPKGIHV	9	Unmodified	_WKYPKGIHV_					0	0	0		nc|ENSG00000140694|O95453-2|PARN;ENSG00000140694|ENST00000437198|PARN;nc|ENSG00000140694|O95453-3|PARN	nc|ENSG00000140694|O95453-2|PARN	nc|ENSG00000140694|O95453-2|PARN	MULTI-MSMS	OvCa9_classI_Rep2	2	564.3216552734375	2	564.321651	1126.62875	3.1763	0.0017924	-0.16431	-9.2725E-05	3.012	0.0016997	564.3213788592631	26.344	0.90757	23.635	23.418	24.326	-2.7097					50	25	3	0	0	0	0.72693	1	406	406		8.8223	0.59103	1	124260			63775	4870	52614	52664	70117	70117					0.0705003233078969
WLAAPPRLAR	10	Unmodified	_WLAAPPRLAR_					0	0	0		ENSG00000156860|ENST00000356166|FBRS;ENST00000494101.1_1_16:30680055-30680963:+|nuORF;nc|ENSG00000156860|Q9HAH7|FBRS;nc|ENSG00000156860|Q9HAH7-1|FBRS	ENSG00000156860|ENST00000356166|FBRS	ENSG00000156860|ENST00000356166|FBRS	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.842529296875	2	575.845825	1149.6771	-1.5734	-0.00090602	-2.8677	-0.0016514	-4.4411	-0.0025574	575.8439449675558	145.55	4.7888	144.12	142.78	147.57	-1.4357					360	93	6	0	0	0	0.68695	1	14379	14379		31.955	1.6371	1	565210			63776	5859	52615	52665	70118	70118					0.1082452597070187
WLAEKLPTL	9	Unmodified	_WLAEKLPTL_					0	0	0		ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-2|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	ENSG00000175216|ENST00000529230|CKAP5	ENSG00000175216|ENST00000529230|CKAP5	MULTI-MSMS	OvCa99_classI_Rep5	1	535.81640625	2	535.815867	1069.61718	1.7622	0.00094422	0.45762	0.0002452	2.2198	0.0011894	535.8160423769106	116.7	3.1487	116.7	116.23	119.38	0					126	67	4	0	0	0	0.017173	4	13369	13346;13369;13394;13419		150.36	54.786	1	10049000			63777	7525	52616	52666	70119;70120;70121;70122	70120					0.08515790516798916
WLAEKLPTL	9	Unmodified	_WLAEKLPTL_					0	0	0		ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-2|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	ENSG00000175216|ENST00000529230|CKAP5	ENSG00000175216|ENST00000529230|CKAP5	MULTI-MSMS	OvCa9_classI_Rep3	3	535.8170166015625	2	535.815867	1069.61718	0.17555	9.4062E-05	-0.13153	-7.0475E-05	0.044022	2.3588E-05	535.8155898689699	117.14	1.5349	116.11	115.75	117.28	-1.0324					72	30	3	0	0	0	0.2077	1	8780	8780		75.043	22.107	1	126940			63778	7525	52616	52666	70123	70123					0.08515790516798916
WLAEKLPTL	9	Unmodified	_WLAEKLPTL_					0	0	0		ENSG00000175216|ENST00000529230|CKAP5;nc|ENSG00000175216|Q14008-2|CKAP5;nc|ENSG00000175216|Q14008-3|CKAP5	ENSG00000175216|ENST00000529230|CKAP5	ENSG00000175216|ENST00000529230|CKAP5	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.8154296875	2	535.815867	1069.61718	-1.4596	-0.00078205	1.3565	0.00072684	-0.10304	-5.5208E-05	535.8164154419202	117.39	1.6788	116.03	115.72	117.4	-1.3645					72	31	3	0	0	0	0.055627	3	10978	10968;10978;10992		115.49	43.617	1	150430			63779	7525	52616	52666	70124;70125;70126	70125					0.08515790516798916
WLAKSLQGV	9	Unmodified	_WLAKSLQGV_					0	0	0			REV__tr|A0A553SPU5|A0A553SPU5_NIACIHTH-typetranscriptionalregulatorHprOS=NialliacirculansOX=1397GN=CEQ21_09550PE=4SV=1	REV__tr|A0A553SPU5|A0A553SPU5_NIACIHTH-typetranscriptionalregulatorHprOS=NialliacirculansOX=1397GN=CEQ21_09550PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	501.2900085449219	2	501.292559	1000.57057	-1.4695	-0.00073667	-2.6975	-0.0013522	-4.167	-0.0020889	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.6653	1	11282	11282		24.203	1.1603	1	97838	+		63780	30571	52617	52667	70127	70127					0.07030350685522535
WLALLQPPPQA	11	Unmodified	_WLALLQPPPQA_					0	0	0			REV__ENST00000307630.4_1_7:75959536-75988336:-|nuORF	REV__ENST00000307630.4_1_7:75959536-75988336:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.7044372558594	3	411.904524	1232.69174	0.99294	0.000409	4.3197	0.0017793	5.3126	0.0021883	411.90642830718855	31.087	0.57903	31.087	30.831	31.41	0					21	11	3	0	0	0	0.025487	1	1267	1267		31.634	13.103	1	65667	+		63781	24310	52618	52668	70128	70128					0.08470553328174901
WLALNWMR	8	Unmodified	_WLALNWMR_					0	0	0			REV__ENST00000572681.6_2_19:42778720-42790976:+|nuORF	REV__ENST00000572681.6_2_19:42778720-42790976:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.3162841796875	2	545.286754	1088.55896	0.87683	0.00047812	-4.2706	-0.0023287	-3.3938	-0.0018506	545.2854385016436	139.68	1.9528	138.18	137	138.95	-1.4952					90	38	4	0	0	0	0.028476	1	13569	13569		26.796	0	1	31893	+		63782	27754	52619	52669	70129	70129					0.018218303905314315
WLARPRQRR	9	Unmodified	_WLARPRQRR_					0	0	0			REV__ENST00000525715.5_1_11:1244357-1247464:+|nuORF	REV__ENST00000525715.5_1_11:1244357-1247464:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	619.8687744140625	2	619.870697	1237.72684	-3.8587	-0.0023919	1.856	0.0011505	-2.0027	-0.0012414	619.8716963185042	150.28	4.6468	150.06	148.67	153.32	-0.22696					319	96	5	0	0	0	0.53957	2	15286	15241;15286		38.806	2.4222	1	492670	+		63783	27119	52620	52670	70130;70131	70131					0.11748653699328315
WLARPRQRR	9	Unmodified	_WLARPRQRR_					0	0	0			REV__ENST00000525715.5_1_11:1244357-1247464:+|nuORF	REV__ENST00000525715.5_1_11:1244357-1247464:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8683471679688	2	619.870697	1237.72684	-2.7857	-0.0017268	0.71117	0.00044084	-2.0745	-0.0012859	619.8709153162803	147.4	3.9416	146.45	144.36	148.3	-0.9512					241	78	4	0	0	0	0.53957	2	12410	12363;12410		38.806	3.4903	1	225770	+		63784	27119	52620	52670	70132;70133	70133					0.11748653699328315
WLARPRQRR	9	Unmodified	_WLARPRQRR_					0	0	0			REV__ENST00000525715.5_1_11:1244357-1247464:+|nuORF	REV__ENST00000525715.5_1_11:1244357-1247464:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8690185546875	2	619.870697	1237.72684	-3.6059	-0.0022352	1.5127	0.00093766	-2.0933	-0.0012976	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.52083	2	12979	12866;12979		40.573	4.9543	1	664560	+		63785	27119	52620	52670	70134;70135	70135					0.11748653699328315
WLARPRQRR	9	Unmodified	_WLARPRQRR_					0	0	0			REV__ENST00000525715.5_1_11:1244357-1247464:+|nuORF	REV__ENST00000525715.5_1_11:1244357-1247464:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8694458007812	2	619.870697	1237.72684	-1.8762	-0.001163	-0.14557	-9.0237E-05	-2.0217	-0.0012532	619.8704234308321	147.79	3.8764	146.35	144.25	148.12	-1.4351					189	77	4	0	0	0	0.59983	2	14559	14559;14584		31.955	7.4357	1	269210	+		63786	27119	52620	52670	70136;70137	70136					0.11748653699328315
WLASTLRKL	9	Unmodified	_WLASTLRKL_					0	0	0			REV__DENND5A|p.L368Wfs*62|1|0.17|ENSG00000184014|chr11:9193511-9193529|GCTTTGACCGGTCATCCAG/-|frameshift_variant	REV__DENND5A|p.L368Wfs*62|1|0.17|ENSG00000184014|chr11:9193511-9193529|GCTTTGACCGGTCATCCAG/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	544.3377075195312	2	544.334759	1086.65496	-0.74879	-0.00040759	0.53764	0.00029266	-0.21114	-0.00011493	544.3348396275338	64.349	0.78266	64.349	64.011	64.793	0					45	18	4	0	0	0	0.22961	1	5839	5839		71.296	2.5089	1	2860400	+		63787	16287	52621	52671	70138	70138					0.11510301502289622
WLAVNSTY	8	Unmodified	_WLAVNSTY_					0	0	0			REV__ENST00000428780.2_1_10:1068608-1089667:+|nuORF	REV__ENST00000428780.2_1_10:1068608-1089667:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	477.24005126953125	2	477.239993	952.465432	-0.016503	-7.8761E-06	0.12217	5.8306E-05	0.10567	5.043E-05	477.23990808718656	58.592	0.52946	58.592	58.363	58.892	0					36	12	4	0	0	0	0.56195	1	4997	4997		71.296	12.514	1	2813800	+		63788	25693	52622	52672	70139	70139					-0.012701905109111067
WLCPLALTLI	10	Acetyl (Protein N-term),Carbamidomethyl (C)	_(Acetyl (Protein N-term))WLC(Carbamidomethyl (C))PLALTLI_	WLC(1)PLALTLI		WLC(62)PLALTLI		1	1	0		SFTPA2|p.T204Pfs*31|1|0.12|ENSG00000185303|chr10:79557345-79557346|GT/-|frameshift_variant;ENSG00000185303|ENST00000372325|SFTPA2	SFTPA2|p.T204Pfs*31|1|0.12|ENSG00000185303|chr10:79557345-79557346|GT/-|frameshift_variant	SFTPA2|p.T204Pfs*31|1|0.12|ENSG00000185303|chr10:79557345-79557346|GT/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	414.571044921875	3	414.570265	1240.68897	-0.18545	-7.6882E-05	3.2474	0.0013463	3.062	0.0012694	414.5715900774845	67.622	1.8304	64.961	64.545	66.375	-2.661					91	36	4	0	0	0	0.44431	1	5293	5293		62.107	16.199	1	490760			63789	8245	52623	52673	70140	70140	84				0.07824961879009606
WLCSPRPSP	9	Unmodified	_WLCSPRPSP_					0	0	0			REV__ENST00000356607.8_1_1:10690161-10690287:+|nuORF	REV__ENST00000356607.8_1_1:10690161-10690287:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	521.762939453125	2	521.760569	1041.50659	-0.16514	-8.6161E-05	1.7069	0.00089061	1.5418	0.00080445	521.7613964382147	61.249	1.4473	57.819	57.395	58.842	-3.43					66	29	3	0	0	0	0.35694	1	4210	4210		56.434	3.3448	1	1220200	+		63790	24766	52624	52674	70141	70141					-0.012507527430670962
WLCVALAII	9	Carbamidomethyl (C)	_WLC(Carbamidomethyl (C))VALAII_	WLC(1)VALAII		WLC(60)VALAII		0	1	0		ENSG00000103257|ENST00000261622|SLC7A5;ENST00000563489.1_1_16:87866578-87870352:-|nuORF	ENSG00000103257|ENST00000261622|SLC7A5	ENSG00000103257|ENST00000261622|SLC7A5	MULTI-MSMS	OvCa9_classI_Rep3	3	530.3116455078125	2	529.806988	1057.59942	0.35582	0.00018852	-2.4351	-0.0012902	-2.0793	-0.0011016	529.8030255036192	105.38	2.0148	104.03	103.57	105.59	-1.3482					144	38	5	0	0	0	0.32242	1	7428	7428		60.404	9.0682	1	4513200			63791	2300	52625	52675	70142	70142	20				0.07292751990280522
WLCVALAII	9	Carbamidomethyl (C)	_WLC(Carbamidomethyl (C))VALAII_	WLC(1)VALAII		WLC(73)VALAII		0	1	0		ENSG00000103257|ENST00000261622|SLC7A5;ENST00000563489.1_1_16:87866578-87870352:-|nuORF	ENSG00000103257|ENST00000261622|SLC7A5	ENSG00000103257|ENST00000261622|SLC7A5	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.8047485351562	2	529.806988	1057.59942	-1.3206	-0.00069964	-0.5338	-0.00028281	-1.8544	-0.00098245	529.8038544668168	106.03	2.0556	104.01	103.55	105.6	-2.0161					158	39	6	0	0	0	0.22187	1	9644	9644		72.62	9.3137	1	4614300			63792	2300	52625	52675	70143	70143	20				0.07292751990280522
WLEENVHEV	9	Unmodified	_WLEENVHEV_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89971082-89977643:+|nuORF;ENST00000563484.1_1_16:89971421-89975542:+|nuORF	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-MSMS	OvCa99_classI_Rep5	1	577.7792358398438	2	577.77747	1153.54039	1.035	0.00059799	1.4317	0.00082721	2.4667	0.0014252	577.7781913009568	83.552	1.1821	83.552	83.249	84.431	0					55	27	3	0	0	0	0.025955	1	8689	8689		139.97	65.715	1	3289600			63793	4889	52626	52676	70144	70144					-0.03024052770342678
WLEENVHEV	9	Unmodified	_WLEENVHEV_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89971082-89977643:+|nuORF;ENST00000563484.1_1_16:89971421-89975542:+|nuORF	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-MATCH	OvCa9_classI_Rep2	2		2	577.77747	1153.54039	-2.1402	-0.0012365	2.2362	0.001292	0.096039	5.5489E-05	577.7787341242863	84.944	0.99452	83.398	82.899	83.893	-1.5462	-0.074784	0.00057287	NaN	139.97	39	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39181			63794	4889	52626	52676							-0.03024052770342678
WLEENVHEV	9	Unmodified	_WLEENVHEV_					0	0	0		ENSG00000141002|ENST00000263346|TCF25;ENST00000570116.6_1_16:89971082-89977643:+|nuORF;ENST00000563484.1_1_16:89971421-89975542:+|nuORF	ENSG00000141002|ENST00000263346|TCF25	ENSG00000141002|ENST00000263346|TCF25	MULTI-MATCH	OvCa9_classI_Rep3	3		2	577.77747	1153.54039	-1.908	-0.0011024	2.404	0.001389	0.49599	0.00028657	577.778591207636	85.688	0.95193	83.468	83.235	84.187	-2.2204	-0.0047619	0.0007667	NaN	139.97	36	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	75519			63795	4889	52626	52676							-0.03024052770342678
WLEQDTSLH	9	Unmodified	_WLEQDTSLH_					0	0	0			REV__nc|ENSG00000182218|Q96JK4-2|HHIPL1	REV__nc|ENSG00000182218|Q96JK4-2|HHIPL1	MULTI-MSMS	OvCa99_classI_Rep5	1	564.7706909179688	2	564.769645	1127.52474	2.3227	0.0013118	0.15051	8.5003E-05	2.4732	0.0013968	564.7695886004549	92.948	0.70554	92.948	92.721	93.426	0					56	16	5	0	0	0	0.074342	1	10051	10051		104.75	22.506	1	7864900	+		63796	22271	52627	52677	70145	70145					-0.03392339287370305
WLEVVDLAKGL	11	Unmodified	_WLEVVDLAKGL_					0	0	0			REV__tr|A0A553SKX3|A0A553SKX3_NIACITranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_19565PE=4SV=1	REV__tr|A0A553SKX3|A0A553SKX3_NIACITranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_19565PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.9077453613281	3	414.907934	1241.70197	-0.70867	-0.00029403	-2.8713	-0.0011913	-3.58	-0.0014854	414.9066595651532	71.408	1.0758	67.952	67.677	68.753	-3.4563					63	21	4	0	0	0	0.55686	1	5452	5452		48.602	4.9508	1	500780	+		63797	30160	52628	52678	70146	70146					0.09079116262751086
WLEVVDLAKGL	11	Unmodified	_WLEVVDLAKGL_					0	0	0			REV__tr|A0A553SKX3|A0A553SKX3_NIACITranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_19565PE=4SV=1	REV__tr|A0A553SKX3|A0A553SKX3_NIACITranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_19565PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	414.907934	1241.70197	0.76431	0.00031712	-3.9876	-0.0016545	-3.2233	-0.0013374	414.90617978444027	70.34	1.0646	67.769	67.361	68.426	-2.5707	-0.091281	-0.00071477	NaN	48.602	61	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	333950	+		63798	30160	52628	52678							0.09079116262751086
WLFDPKTD	8	Unmodified	_WLFDPKTD_					0	0	0		tr|A0A7D6VZH4|A0A7D6VZH4_9CLOTTIGR01906familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20265PE=4SV=1	tr|A0A7D6VZH4|A0A7D6VZH4_9CLOTTIGR01906familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20265PE=4SV=1	tr|A0A7D6VZH4|A0A7D6VZH4_9CLOTTIGR01906familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20265PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.3094177246094	2	511.2531	1020.49165	0.077832	3.9792E-05	-0.47354	-0.0002421	-0.39571	-0.00020231	511.2529445631993	128.38	0.86176	126.92	126.63	127.5	-1.4565					18	16	2	0	0	0	0.028476	1	12266	12266		57.811	27.308	1	14707			63799	35358	52629	52679	70147	70147					-0.01777921339430577
WLFDPKTD	8	Unmodified	_WLFDPKTD_					0	0	0		tr|A0A7D6VZH4|A0A7D6VZH4_9CLOTTIGR01906familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20265PE=4SV=1	tr|A0A7D6VZH4|A0A7D6VZH4_9CLOTTIGR01906familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20265PE=4SV=1	tr|A0A7D6VZH4|A0A7D6VZH4_9CLOTTIGR01906familymembraneproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20265PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	511.2531	1020.49165	0.92072	0.00047072	-0.89369	-0.0004569	0.027027	1.3818E-05	511.2523543430968	127.44	0.39594	127.21	126.99	127.38	-0.2359	0.14213	-0.00028071	NaN	57.811	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	19256			63800	35358	52629	52679							-0.01777921339430577
WLFIFNALLL	10	Unmodified	_WLFIFNALLL_					0	0	0			REV__TPTE2|p.D94Nfs*13|1|0.25|ENSG00000132958|chr13:19474006-19474027|GCTGTCAGTGAAAATTAGGTCG/-|frameshift_variant	REV__TPTE2|p.D94Nfs*13|1|0.25|ENSG00000132958|chr13:19474006-19474027|GCTGTCAGTGAAAATTAGGTCG/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	624.3756103515625	2	625.37081	1248.72707	-5.6449	-0.0035301	-1.3382	-0.00083685	-6.983	-0.004367	625.3701190018352	161.89	0.60942	161.67	161.33	161.94	-0.22696					17	11	2	0	0	0	0.027084	1	16492	16492		24.203	0	1	28782	+		63801	29524	52630	52680	70148	70148					0.11265215855996757
WLFRFTVLAI	10	Unmodified	_WLFRFTVLAI_					0	0	0			REV__ENST00000445273.6_1_13:31711130-31711382:-|nuORF	REV__ENST00000445273.6_1_13:31711130-31711382:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3692626953125	2	633.373884	1264.73321	-4.8823	-0.0030923	-2.3632	-0.0014968	-7.2455	-0.0045891	633.3722815077032	152.94	4.1794	151.96	150.74	154.92	-0.97301					385	92	6	0	0	0	0.76627	1	13329	13329		23.042	6.3251	1	765700	+		63802	25886	52631	52681	70149	70149					0.11143734087522716
WLGLVWQKLL	10	Unmodified	_WLGLVWQKLL_					0	0	0		nc|ENSG00000145476|Q6ZWL3-2|CYP4V2;ENSG00000145476|ENST00000378802|CYP4V2	nc|ENSG00000145476|Q6ZWL3-2|CYP4V2	nc|ENSG00000145476|Q6ZWL3-2|CYP4V2	MSMS	OvCa9_classI_Rep4_	4	628.3814697265625	2	628.381709	1254.74886	NaN	NaN	NaN	NaN	NaN	NaN	NaN	152.13	1	150.7	150.2	151.2	-1.435								0	0	0	0.14049	1	15047	15047		23.042	3.939	1				63803	5226	52632	52682	70150	70150					0.1316802060455302
WLGSKSLLL	9	Unmodified	_WLGSKSLLL_					0	0	0		chr6:109250991-109254448|247|18.56|0.13|7.16|+|0|TE_info:L1PA2,L1PA2_dup2028,L1,LINE,donor,-,109245219,109250991|None,CCDC162P|9	chr6:109250991-109254448|247|18.56|0.13|7.16|+|0|TE_info:L1PA2,L1PA2_dup2028,L1,LINE,donor,-,109245219,109250991|None,CCDC162P|9	chr6:109250991-109254448|247|18.56|0.13|7.16|+|0|TE_info:L1PA2,L1PA2_dup2028,L1,LINE,donor,-,109245219,109250991|None,CCDC162P|9	MULTI-MSMS	OvCa9_classI_Rep2	2	508.80877685546875	2	508.810585	1015.60662	-1.1049	-0.00056221	-3.4524	-0.0017566	-4.5574	-0.0023188	508.8087276313577	60.665	1.7306	57.895	57.396	59.126	-2.7702					90	32	4	0	0	0	0.35444	1	4469	4469		56.721	5.3856	1	689010			63804	504	52633	52683	70151	70151					0.09943807862384801
WLGTVFGVL	9	Unmodified	_WLGTVFGVL_					0	0	0		nc|ENSG00000181830|Q96A29-2|SLC35C1;ENSG00000181830|ENST00000314134|SLC35C1	nc|ENSG00000181830|Q96A29-2|SLC35C1	nc|ENSG00000181830|Q96A29-2|SLC35C1	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.2479553222656	2	496.284203	990.553853	-0.31095	-0.00015432	-0.83821	-0.00041599	-1.1492	-0.00057031	496.2847472805885	69.477	0.28345	69.477	69.268	69.552	0					10	6	2	0	0	0	0.02705	1	6586	6586		79.939	5.6842	1	229700			63805	7959	52634	52684	70152	70152					0.05819849799581789
WLGTVFGVL	9	Unmodified	_WLGTVFGVL_					0	0	0		nc|ENSG00000181830|Q96A29-2|SLC35C1;ENSG00000181830|ENST00000314134|SLC35C1	nc|ENSG00000181830|Q96A29-2|SLC35C1	nc|ENSG00000181830|Q96A29-2|SLC35C1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	496.284203	990.553853	0.079183	3.9297E-05	5.5378	0.0027483	5.617	0.0027876	496.2873757092872	72.108	0.34346	69.505	69.376	69.72	-2.6023	0.014125	0.0026863	NaN	79.939	8	6	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10491			63806	7959	52634	52684							0.05819849799581789
WLHLLAMY	8	Unmodified	_WLHLLAMY_					0	0	0			REV__ENSG00000066455|ENST00000163416|GOLGA5	REV__ENSG00000066455|ENST00000163416|GOLGA5	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.7964477539062	2	523.778231	1045.54191	-0.87612	-0.00045889	-1.3382	-0.0007009	-2.2143	-0.0011598	523.7778135094753	33.742	0.43892	33.742	33.434	33.873	0					13	8	2	0	0	0	0.028476	1	1554	1554		33.493	19.718	1	46006	+		63807	16816	52635	52685	70153	70153					0.02095909784725336
WLHLLIIL	8	Unmodified	_WLHLLIIL_					0	0	0		ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant;ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-4|ADGRV1;nc|ENSG00000164199|Q8WXG9-3|ADGRV1;ENST00000504142.2_2_5:89924394-89949789:+|nuORF	ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	510.83123779296875	2	510.833863	1019.65317	-1.2892	-0.00065856	-3.0513	-0.0015587	-4.3405	-0.0022173	510.8322085599463	120.24	1.0851	120.06	119.79	120.88	-0.17138					40	21	2	0	0	0	0.58426	1	11587	11587		67.327	23.701	1	218730			63808	42	52636	52686	70154	70154					0.1441329248433476
WLHLLIIL	8	Unmodified	_WLHLLIIL_					0	0	0		ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant;ENSG00000164199|ENST00000405460|ADGRV1;nc|ENSG00000164199|Q8WXG9-4|ADGRV1;nc|ENSG00000164199|Q8WXG9-3|ADGRV1;ENST00000504142.2_2_5:89924394-89949789:+|nuORF	ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	ADGRV1|p.G6098Qfs*11|1|0.02|ENSG00000164199|chr5:91072584-91072585|-/GC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.8306579589844	2	510.833863	1019.65317	-0.32483	-0.00016593	-3.9955	-0.002041	-4.3203	-0.002207	510.8317329543334	121.75	1.4156	120.4	120.11	121.52	-1.3479					49	27	2	0	0	0	0.58426	2	11478	11467;11478		67.327	12.433	1	285320			63809	42	52636	52686	70155;70156	70156					0.1441329248433476
WLIFKNHVDWR	11	Unmodified	_WLIFKNHVDWR_					0	0	0			REV__tr|A0A553STN6|A0A553STN6_NIACICytochromeubiquinoloxidasesubunitIOS=NialliacirculansOX=1397GN=CEQ21_05325PE=3SV=1	REV__tr|A0A553STN6|A0A553STN6_NIACICytochromeubiquinoloxidasesubunitIOS=NialliacirculansOX=1397GN=CEQ21_05325PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	505.8091735839844	3	505.273611	1512.799	-0.61018	-0.00030831	-3.3844	-0.0017101	-3.9946	-0.0020184	505.27183147767914	73.345	1.6746	70.945	70.378	72.052	-2.3999					88	31	4	0	0	0	0.026145	1	5935	5935		29.551	14.857	1	316830	+		63810	30988	52637	52687	70157	70157					0.06311523262388619
WLIISSLLL	9	Unmodified	_WLIISSLLL_					0	0	0		nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-5|PSEN1;nc|ENSG00000080815|P49768-6|PSEN1;nc|ENSG00000080815|P49768-2|PSEN1;ENSG00000080815|ENST00000324501|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1	nc|ENSG00000080815|P49768-3|PSEN1;nc|ENSG00000080815|P49768-7|PSEN1	nc|ENSG00000080815|P49768-7|PSEN1	MULTI-MSMS	OvCa9_classI_Rep3	3	529.3355102539062	2	529.336436	1056.65832	1.2484	0.0006608	-4.4143	-0.0023366	-3.1659	-0.0016758	529.3335476420067	123.24	1.3997	122.2	121.89	123.29	-1.0377					61	26	4	0	0	0	0.59983	1	9523	9523		31.955	1.6371	1	115190			63811	1641;14901	52638	52688	70158	70158					0.13225551556297432
WLIMGLTIP	9	Unmodified	_WLIMGLTIP_					0	0	0		tr|A0A7D6VV66|A0A7D6VV66_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23125PE=4SV=1	tr|A0A7D6VV66|A0A7D6VV66_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23125PE=4SV=1	tr|A0A7D6VV66|A0A7D6VV66_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23125PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	522.3026733398438	2	522.301539	1042.58852	1.2415	0.00064846	0.62709	0.00032753	1.8686	0.00097599	522.3016639909167	127.08	1.1375	126.85	126.54	127.68	-0.2359					63	22	4	0	0	0	0.32337	1	12438	12438		60.294	12.637	1	309860			63812	35214	52639	52689	70159	70159					0.06893349616007072
WLIPLIAM	8	Unmodified	_WLIPLIAM_					0	0	0			REV__tr|A0A7D6VTM8|A0A7D6VTM8_9CLOTL-lactatepermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09770PE=3SV=1	REV__tr|A0A7D6VTM8|A0A7D6VTM8_9CLOTL-lactatepermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_09770PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.7852783203125	2	478.785524	955.556496	-1.2107	-0.00057965	0.8657	0.00041448	-0.34497	-0.00016517	478.7858288212029	146.58	1.5256	145.15	144.7	146.22	-1.4357					68	29	4	0	0	0	0.7543	1	14421	14421		24.504	1.4615	1	466310	+		63813	31615	52640	52690	70160	70160					0.0769398193286861
WLKHLFFV	8	Unmodified	_WLKHLFFV_					0	0	0			REV__ENST00000293288.12_1_19:49464902-49464995:+|nuORF	REV__ENST00000293288.12_1_19:49464902-49464995:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	545.317138671875	2	545.315838	1088.61712	-1.7047	-0.0009296	2.9993	0.0016356	1.2946	0.00070598	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.72922	1	14163	14163		37.028	9.1462	1	202430	+		63814	24170	52641	52691	70161	70161					0.07635835307473826
WLKKVHLIM	9	Unmodified	_WLKKVHLIM_					0	0	0			REV__ENST00000517513.5_1_4:185553430-185553481:-|nuORF	REV__ENST00000517513.5_1_4:185553430-185553481:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3561401367188	2	584.357179	1166.69981	-1.7162	-0.0010029	0.46115	0.00026948	-1.255	-0.00073338	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.59983	1	14338	14338		31.955	8.4322	1	833330	+		63815	27010	52642	52692	70162	70162					0.12312409043966
WLKLRSAN	8	Unmodified	_WLKLRSAN_					0	0	0		CHDH|p.C514Hfs*3|1|0.4|ENSG00000016391|chr3:53818021-53818022|CA/-|frameshift_variant;ENSG00000016391|ENST00000315251|CHDH	CHDH|p.C514Hfs*3|1|0.4|ENSG00000016391|chr3:53818021-53818022|CA/-|frameshift_variant	CHDH|p.C514Hfs*3|1|0.4|ENSG00000016391|chr3:53818021-53818022|CA/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	493.76776123046875	2	494.290351	986.566149	-0.49347	-0.00024392	0.69253	0.00034231	0.19906	9.8394E-05	494.29054255857164	69.333	1.0732	65.852	65.516	66.589	-3.4812					36	21	2	0	0	0	0.028476	1	5161	5161		47.916	9.1095	1	82706			63816	232	52643	52693	70163	70163					0.07232886262613647
WLLALERQRKL	11	Unmodified	_WLLALERQRKL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;ENSG00000127603|ENST00000564288|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|Q9UPN3-5|MACF1;nc|ENSG00000127603|O94854|MACF1;ENST00000497964.1_1_1:39924789-39929409:+|nuORF	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.9625244140625	3	475.961144	1424.8616	-1.6329	-0.00077717	1.0267	0.00048867	-0.60615	-0.0002885	475.9615468309244	107.77	2.2527	105.89	105.54	107.79	-1.8785					122	44	4	0	0	0	0.72538	1	9833	9833		10.587	0	1	542170			63817	15005	52644	52694	70164	70164					0.16616669330596778
WLLAMPRL	8	Unmodified	_WLLAMPRL_					0	0	0		ENST00000486665.5_1_X:48674881-48676452:+|nuORF	ENST00000486665.5_1_X:48674881-48676452:+|nuORF	ENST00000486665.5_1_X:48674881-48676452:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	500.7934875488281	2	500.294048	998.573543	1.0101	0.00050532	-2.3426	-0.001172	-1.3325	-0.00066665	500.793497386953	83.459	0.72266	83.459	83.078	83.801	0					30	16	2	0	0	0	0.65582	1	8662	8662		52.299	2.2746	1	7009300			63818	12625	52645	52695	70165	70165					0.07419902538686074
WLLEKDSY	8	Unmodified	_WLLEKDSY_					0	0	0		tr|A0A7D6VTN1|A0A7D6VTN1_9CLOTEnergy-couplingfactortransportertransmembraneproteinEcfTOS=ClostridiumintestinaleOX=36845GN=HZF06_03255PE=4SV=1	tr|A0A7D6VTN1|A0A7D6VTN1_9CLOTEnergy-couplingfactortransportertransmembraneproteinEcfTOS=ClostridiumintestinaleOX=36845GN=HZF06_03255PE=4SV=1	tr|A0A7D6VTN1|A0A7D6VTN1_9CLOTEnergy-couplingfactortransportertransmembraneproteinEcfTOS=ClostridiumintestinaleOX=36845GN=HZF06_03255PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.311279296875	2	527.266207	1052.51786	-0.27186	-0.00014334	0.74847	0.00039464	0.47661	0.0002513	527.2673865222267	44.944	0.22849	44.944	44.84	45.068	0					6	4	2	0	0	0	0.028476	1	3079	3079		29.15	0	1	36705			63819	35126	52646	52696	70166	70166					-0.006296521679587386
WLLFRWWRRRW	11	Unmodified	_WLLFRWWRRRW_					0	0	0		ENST00000463462.5_1_7:148982563-148988696:+|nuORF;ENST00000426347.5_1_7:148982610-148985528:+|nuORF;ENST00000481817.5_1_7:148984700-148990670:+|nuORF	ENST00000463462.5_1_7:148982563-148988696:+|nuORF	ENST00000463462.5_1_7:148982563-148988696:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	586.8316040039062	3	587.663544	1759.9688	-0.35491	-0.00020857	3.2137	0.0018886	2.8587	0.00168	587.6654340914765	59.072	0.65069	55.68	55.4	56.051	-3.392					14	12	2	0	0	0	0.02656	1	3897	3897		1.4188	1.0473	1	67301			63820	11734	52647	52697	70167	70167					0.11921684055459991
WLLHHPLPLL	10	Unmodified	_WLLHHPLPLL_					0	0	0			REV__nc|ENSG00000263155|P0CAP1-9|MYZAP	REV__nc|ENSG00000263155|P0CAP1-9|MYZAP	MULTI-MSMS	OvCa9_classI_Rep3	3	619.868896484375	2	619.874051	1237.73355	-3.6059	-0.0022352	-3.8982	-0.0024164	-7.5041	-0.0046516	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.73286	1	12707	12707		26.796	0.10319	1	664560	+		63821	29185	52648	52698	70168	70168					0.1241915380737737
WLLIRSPL	8	Unmodified	_WLLIRSPL_					0	0	0			REV__nc|ENSG00000162576|Q9BRK3-4|MXRA8	REV__nc|ENSG00000162576|Q9BRK3-4|MXRA8	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.73529052734375	2	499.313295	996.612037	2.0798	0.0010385	-2.6151	-0.0013057	-0.53532	-0.00026729	499.3117700184878	76.385	0.28025	76.385	76.238	76.518	0					10	6	2	0	0	0	0.028476	1	7643	7643		60.972	13.056	1	245620	+		63822	20747	52649	52699	70169	70169					0.11359531444838922
WLLIRSPL	8	Unmodified	_WLLIRSPL_					0	0	0			REV__nc|ENSG00000162576|Q9BRK3-4|MXRA8	REV__nc|ENSG00000162576|Q9BRK3-4|MXRA8	MULTI-MATCH	OvCa9_classI_Rep3	3		2	499.313295	996.612037	-0.41192	-0.00020568	-4.9421	-0.0024676	-5.354	-0.0026733	499.3107782070588	78.8	0.39	76.452	76.307	76.697	-2.3478	0.03335	-0.0016133	NaN	79.451	13	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12699	+		63823	20747	52649	52699							0.11359531444838922
WLLLPRWLA	9	Unmodified	_WLLLPRWLA_					0	0	0			REV__chr11:57368437-57369361|144|11.76|0.52|4.49|+|1|P2RX3,P2RX3|1	REV__chr11:57368437-57369361|144|11.76|0.52|4.49|+|1|P2RX3,P2RX3|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3560791015625	2	584.355494	1166.69644	-1.7162	-0.0010029	3.3454	0.0019549	1.6292	0.00095203	584.3573566926789	145.57	4.3434	144.14	142.68	147.03	-1.4357					309	84	5	0	0	0	0.64339	1	14199	14199		26.796	2.2769	1	833330	+		63824	15859	52650	52700	70170	70170					0.11975482261595971
WLLRFPAP	8	Unmodified	_WLLRFPAP_					0	0	0			REV__nc|ENSG00000006327|Q9NP84-2|TNFRSF12A	REV__nc|ENSG00000006327|Q9NP84-2|TNFRSF12A	MULTI-MSMS	OvCa99_classI_Rep5	1	500.7945556640625	2	500.292362	998.570172	1.0101	0.00050532	1.0263	0.00051344	2.0363	0.0010188	500.793497386953	83.459	0.72266	83.459	83.078	83.801	0					30	16	2	0	0	0	0.35894	2	8692	8692;8707		96.048	37.266	1	7009300	+		63825	16414	52651	52701	70171;70172	70171					0.07082975756316046
WLLRLTRPDL	10	Unmodified	_WLLRLTRPDL_					0	0	0			REV__ENSG00000185522|ENST00000329451|LMNTD2	REV__ENSG00000185522|ENST00000329451|LMNTD2	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.883056640625	2	641.885147	1281.75574	-3.6311	-0.0023307	-0.33677	-0.00021616	-3.9678	-0.0025469	641.8847801872174	153.39	4.0845	151.94	150.68	154.77	-1.4516					420	106	6	0	0	0	0.762	1	15148	15148		23.523	0	1	809780	+		63826	22511	52652	52702	70173	70173					0.12613333485114708
WLLVPGIL	8	Unmodified	_WLLVPGIL_					0	0	0		ENST00000527315.5_1_15:69323805-69349033:+|nuORF;nc|ENSG00000290203|Q96PH1-4|NOX5;nc|ENSG00000290203|Q96PH1-6|NOX5;nc|ENSG00000290203|Q96PH1-3|NOX5;nc|ENSG00000290203|Q96PH1-2|NOX5;ENSG00000255346|ENST00000388866|NOX5;nc|ENSG00000290203|Q96PH1-5|NOX5	ENST00000527315.5_1_15:69323805-69349033:+|nuORF	ENST00000527315.5_1_15:69323805-69349033:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	455.790771484375	2	455.791664	909.568775	-1.8664	-0.00085071	-3.1096	-0.0014173	-4.976	-0.002268	455.79018128378505	107.87	1.3328	106	105.69	107.02	-1.8785					43	26	2	0	0	0	0.46547	1	9858	9858		80.997	13.67	1	218710			63827	9455	52653	52703	70174	70174					0.11037341667577039
WLLWGLLL	8	Unmodified	_WLLWGLLL_					0	0	0		STIM1-WT1|1|fusion;STIM1-WT1|2|fusion;STIM1|p.Q19K|1|0.1|ENSG00000167323|chr11:3856325-3856325|C/A|missense_variant;ENST00000370949.1_1_1:70700379-70700463:+|nuORF;nc|ENSG00000167323|Q13586-2|STIM1;ENSG00000167323|ENST00000526596|STIM1;nc|ENSG00000167323|Q13586|STIM1	STIM1-WT1|1|fusion;ENSG00000167323|ENST00000526596|STIM1	STIM1-WT1|1|fusion	MSMS	OvCa9_classI_Rep4_	4	507.3107604980469	2	507.312764	1012.61097	NaN	NaN	NaN	NaN	NaN	NaN	NaN	160.66	1	159.05	158.55	159.55	-1.6101								0	0	0	0.30129	1	15872	15872		16.705	0	1				63828	32923;6780	52654	52704	70175	70175					0.10517317075937171
WLNSGSTASRV	11	Unmodified	_WLNSGSTASRV_					0	0	0		ENST00000590333.5_3_19:55795372-55798434:+|nuORF;ENST00000309383.5_3_19:55795604-55798431:+|nuORF	ENST00000590333.5_3_19:55795372-55798434:+|nuORF	ENST00000590333.5_3_19:55795372-55798434:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	589.3001708984375	2	589.301644	1176.58874	-0.25377	-0.00014955	-2.3967	-0.0014124	-2.6505	-0.0015619	589.3001558596478	32.848	3.7707	32.848	32.303	36.074	0					152	78	3	0	0	0	0.5466	1	1453	1453		49.536	10.782	1	655400			63829	10272	52655	52705	70176	70176					0.0075044086956950196
WLPDTTGEIVL	11	Unmodified	_WLPDTTGEIVL_					0	0	0		nc|ENSG00000211625|A0A0C4DH25|IGKV3D-20;nc|ENSG00000239951|P01619|IGKV3-20;nc|ENSG00000241351|P04433|IGKV3-11;nc|ENSG00000211632|A0A0A0MRZ8|IGKV3D-11	nc|ENSG00000211625|A0A0C4DH25|IGKV3D-20;nc|ENSG00000241351|P04433|IGKV3-11	nc|ENSG00000211625|A0A0C4DH25|IGKV3D-20	MULTI-MSMS	OvCa99_classI_Rep5	1	622.8329467773438	2	622.332079	1242.6496	1.6067	0.0009999	-3.3599	-0.002091	-1.7532	-0.0010911	622.329985754984	108.7	0.60767	108.7	108.41	109.02	0					31	13	4	0	0	0	0.48738	1	12290	12290		54.776	0.053964	1	1152800			63830	15283;15284	52656	52706	70177	70177					0.0379853312913383
WLPGRGIP	8	Unmodified	_WLPGRGIP_					0	0	0		ENST00000588238.1_1_19:4445497-4445788:-|nuORF	ENST00000588238.1_1_19:4445497-4445788:-|nuORF	ENST00000588238.1_1_19:4445497-4445788:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	448.25830078125	2	448.261062	894.507572	-2.462	-0.0011036	-1.7398	-0.0007799	-4.2018	-0.0018835	448.2601337945915	142.71	1.2357	141.7	141.38	142.62	-1.0102					68	24	5	0	0	0	0.74361	1	11882	11882		29.842	4.3914	1	329850			63831	14074	52657	52707	70178	70178					0.05609829688125956
WLPLKLIL	8	Unmodified	_WLPLKLIL_					0	0	0			REV__ENSG00000112077|ENST00000371175|RHAG	REV__ENSG00000112077|ENST00000371175|RHAG	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3329772949219	2	498.336239	994.657924	-1.8174	-0.00090567	-2.9409	-0.0014655	-4.7582	-0.0023712	498.334772441205	125.12	4.2738	123.72	123.39	127.66	-1.3908					210	84	5	0	0	0	0.69415	2	12026	12000;12026		44.531	7.372	1	4129000	+		63832	18074	52658	52708	70179;70180	70180					0.16038176627080247
WLPLKLILGT	10	Unmodified	_WLPLKLILGT_					0	0	0			REV__ENSG00000112077|ENST00000371175|RHAG	REV__ENSG00000112077|ENST00000371175|RHAG	MULTI-MSMS	OvCa9_classI_Rep2	2	577.369384765625	2	577.37081	1152.72707	-0.0015386	-8.8833E-07	-3.7939	-0.0021905	-3.7954	-0.0021914	577.368591979319	125.62	1.9266	125.38	125.01	126.94	-0.2359					114	38	5	0	0	0	0.6104	1	12280	12280		40.778	6.8565	1	983740	+		63833	18074	52659	52709	70181	70181					0.15681215855966002
WLPLKLILGT	10	Unmodified	_WLPLKLILGT_					0	0	0			REV__ENSG00000112077|ENST00000371175|RHAG	REV__ENSG00000112077|ENST00000371175|RHAG	MULTI-MSMS	OvCa9_classI_Rep3	3	577.3680419921875	2	577.37081	1152.72707	0.41999	0.00024249	-4.1272	-0.0023829	-3.7073	-0.0021405	577.3683674642078	126.91	1.704	125.83	125.44	127.14	-1.0715					108	32	5	0	0	0	0.53885	2	9916	9916;9928		49.442	3.4896	1	1015500	+		63834	18074	52659	52709	70182;70183	70182					0.15681215855966002
WLPSLYYC	8	Unmodified	_WLPSLYYC_					0	0	0		HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|340|3|anti-sense	HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|340|3|anti-sense	HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|340|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.814453125	2	522.746596	1043.47864	1.0262	0.00053644	-4.0838	-0.0021348	-3.0576	-0.0015984	522.744503966754	107.01	0.17114	107.01	106.93	107.1	0					6	3	2	0	0	0	0.028476	1	12070	12070		37.028	7.1869	1	122360			63835	14444	52660	52710	70184	70184					-0.041360757231814205
WLPSRQRPLV	10	Unmodified	_WLPSRQRPLV_					0	0	0		ENSG00000158555|ENST00000336898|GDPD5;nc|ENSG00000158555|Q8WTR4-4|GDPD5;nc|ENSG00000158555|Q8WTR4-3|GDPD5;nc|ENSG00000158555|Q8WTR4-2|GDPD5;nc|ENSG00000158555|Q8WTR4-5|GDPD5	ENSG00000158555|ENST00000336898|GDPD5	ENSG00000158555|ENST00000336898|GDPD5	MULTI-MSMS	OvCa99_classI_Rep5	1	626.371826171875	2	626.369664	1250.72478	0.74472	0.00046647	0.056006	3.508E-05	0.80072	0.00050155	626.3695739245763	159.11	0.63229	159.11	158.84	159.47	0					21	12	2	0	0	0	0.70152	1	18648	18648		30.318	1.1682	1	326060			63836	5961	52661	52711	70185	70185					0.10944180170872642
WLQDQIQTV	9	Unmodified	_WLQDQIQTV_					0	0	0		ENSG00000113966|ENST00000463745|ARL6	ENSG00000113966|ENST00000463745|ARL6	ENSG00000113966|ENST00000463745|ARL6	MULTI-MSMS	OvCa99_classI_Rep5	1	565.7977905273438	2	565.795663	1129.57677	1.5345	0.00086821	0.21201	0.00011996	1.7465	0.00098817	565.7955912149437	111.45	0.54321	111.45	111.24	111.79	0					24	11	3	0	0	0	0.2077	1	12674	12674		75.043	12.936	1	572130			63837	3004	52662	52712	70186	70186					0.017168241263561868
WLQFTTEL	8	Unmodified	_WLQFTTEL_					0	0	0			REV__nc|ENSG00000289762|P0DQW1|SMIM46	REV__nc|ENSG00000289762|P0DQW1|SMIM46	MULTI-MSMS	OvCa99_classI_Rep5	1	519.267578125	2	519.26875	1036.52295	-0.5387	-0.00027973	-2.7145	-0.0014096	-3.2532	-0.0016893	519.2671693319389	71.538	0.77751	71.538	71.267	72.045	0					31	18	2	0	0	0	0.50747	1	6931	6931		76.774	7.9873	1	1853100	+		63838	27300	52663	52713	70187	70187					0.006146516946500924
WLQFTTEL	8	Unmodified	_WLQFTTEL_					0	0	0			REV__nc|ENSG00000289762|P0DQW1|SMIM46	REV__nc|ENSG00000289762|P0DQW1|SMIM46	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	519.26875	1036.52295	-0.5387	-0.00027973	-2.7145	-0.0014096	-3.2532	-0.0016893	519.2671693319389	71.538	0.77751	71.538	71.267	72.045	0	0.090145	-0.00012007	NaN	76.774	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1853100	+		63839	27300	52663	52713							0.006146516946500924
WLQFTTEL	8	Unmodified	_WLQFTTEL_					0	0	0			REV__nc|ENSG00000289762|P0DQW1|SMIM46	REV__nc|ENSG00000289762|P0DQW1|SMIM46	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	519.26875	1036.52295	-0.61392	-0.00031879	-0.42616	-0.00022129	-1.0401	-0.00054008	519.2693064096021	74.588	0.77322	71.357	70.952	71.726	-3.2308	-0.090145	0.0022565	NaN	76.774	21	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26666	+		63840	27300	52663	52713							0.006146516946500924
WLRELPDQI	9	Unmodified	_WLRELPDQI_					0	0	0		ENSG00000010327|ENST00000321725|STAB1;STAB1|p.G1393Afs*11|1|0.46|ENSG00000010327|chr3:52516388-52516389|-/C|frameshift_variant;nc|ENSG00000010327|Q9NY15-2|STAB1;ENST00000481607.1_1_3:52529402-52542549:+|nuORF;ENST00000479355.1_1_3:52529402-52535457:+|nuORF	ENSG00000010327|ENST00000321725|STAB1	ENSG00000010327|ENST00000321725|STAB1	MULTI-MSMS	OvCa99_classI_Rep5	1	585.3170166015625	2	585.319306	1168.62406	1.3911	0.00081426	0.78494	0.00045944	2.1761	0.0012737	585.3206512591612	106.97	0.59761	106.97	106.72	107.31	0					33	13	3	0	0	0	0.16562	1	12062	12062		82.241	10.363	1	1010100			63841	945	52664	52714	70188	70188					0.04649103397377985
WLRFLLYN	8	Unmodified	_WLRFLLYN_					0	0	0			REV__tr|A0A553SJZ0|A0A553SJZ0_NIACIFadRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_17790PE=4SV=1	REV__tr|A0A553SJZ0|A0A553SJZ0_NIACIFadRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_17790PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.8193969726562	2	562.816202	1123.61785	1.4831	0.0008347	3.4374	0.0019346	4.9204	0.0027693	562.8181498285962	122.2	0.90733	120.84	120.55	121.46	-1.3666					38	17	3	0	0	0	0.73626	1	11529	11529		33.516	4.3455	1	71056	+		63842	30058	52665	52715	70189	70189					0.0609862995650019
WLRFLLYN	8	Unmodified	_WLRFLLYN_					0	0	0			REV__tr|A0A553SJZ0|A0A553SJZ0_NIACIFadRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_17790PE=4SV=1	REV__tr|A0A553SJZ0|A0A553SJZ0_NIACIFadRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_17790PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	562.816202	1123.61785	-0.43976	-0.0002475	5.9345	0.00334	5.4948	0.0030925	562.8194837454699	121.32	0.83992	121.12	120.7	121.54	-0.19718	0.18819	0.0024265	NaN	33.516	30	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50652	+		63843	30058	52665	52715							0.0609862995650019
WLRFLLYN	8	Unmodified	_WLRFLLYN_					0	0	0			REV__tr|A0A553SJZ0|A0A553SJZ0_NIACIFadRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_17790PE=4SV=1	REV__tr|A0A553SJZ0|A0A553SJZ0_NIACIFadRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_17790PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	562.816202	1123.61785	1.0339	0.00058191	3.6609	0.0020604	4.6949	0.0026423	562.8182858070684	121.87	0.73327	120.84	120.64	121.37	-1.0286	-0.094014	-0.00013266	NaN	33.516	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80971	+		63844	30058	52665	52715							0.0609862995650019
WLRFLLYN	8	Unmodified	_WLRFLLYN_					0	0	0			REV__tr|A0A553SJZ0|A0A553SJZ0_NIACIFadRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_17790PE=4SV=1	REV__tr|A0A553SJZ0|A0A553SJZ0_NIACIFadRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_17790PE=4SV=1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	562.816202	1123.61785	1.4831	0.0008347	3.4374	0.0019346	4.9204	0.0027693	562.8181498285962	122.2	0.90733	120.84	120.55	121.46	-1.3666	-0.094173	-0.00038433	NaN	33.516	38	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	71056	+		63845	30058	52665	52715							0.0609862995650019
WLRNKCVY	8	Unmodified	_WLRNKCVY_					0	0	0		nc|ENSG00000130159|Q9BQ95-3|ECSIT;ENSG00000130159|ENST00000270517|ECSIT	nc|ENSG00000130159|Q9BQ95-3|ECSIT	nc|ENSG00000130159|Q9BQ95-3|ECSIT	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.2830810546875	2	541.284211	1080.55387	-0.81289	-0.00044	-3.8608	-0.0020898	-4.6736	-0.0025298	541.2821119645146	121.84	0.91658	120.49	120.16	121.08	-1.3479					37	16	3	0	0	0	0.68312	1	11481	11481		46.766	6.1938	1	79075			63846	3960	52666	52716	70190	70190					0.016815265279319647
WLRNKCVY	8	Unmodified	_WLRNKCVY_					0	0	0		nc|ENSG00000130159|Q9BQ95-3|ECSIT;ENSG00000130159|ENST00000270517|ECSIT	nc|ENSG00000130159|Q9BQ95-3|ECSIT	nc|ENSG00000130159|Q9BQ95-3|ECSIT	MULTI-MATCH	OvCa9_classI_Rep2	2		2	541.284211	1080.55387	-1.6199	-0.00087682	-3.1426	-0.0017011	-4.7625	-0.0025779	541.2823711995954	120.82	1.2833	120.62	120.11	121.4	-0.19719	0.11224	0.00097235	NaN	46.766	49	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64934			63847	3960	52666	52716							0.016815265279319647
WLRNKCVY	8	Unmodified	_WLRNKCVY_					0	0	0		nc|ENSG00000130159|Q9BQ95-3|ECSIT;ENSG00000130159|ENST00000270517|ECSIT	nc|ENSG00000130159|Q9BQ95-3|ECSIT	nc|ENSG00000130159|Q9BQ95-3|ECSIT	MULTI-MATCH	OvCa9_classI_Rep3	3		2	541.284211	1080.55387	1.7506	0.00094759	-6.5141	-0.003526	-4.7635	-0.0025784	541.2805688345654	121.44	1.1516	120.41	120.01	121.16	-1.0273	-0.093801	-0.0026775	NaN	46.766	45	21	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	90260			63848	3960	52666	52716							0.016815265279319647
WLRRARGPAR	10	Unmodified	_WLRRARGPAR_					0	0	0		ENST00000388747.8_1_9:130692031-130693066:-|nuORF	ENST00000388747.8_1_9:130692031-130693066:-|nuORF	ENST00000388747.8_1_9:130692031-130693066:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8698120117188	2	619.870697	1237.72684	-3.6059	-0.0022352	1.5127	0.00093766	-2.0933	-0.0012976	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.76627	1	13095	13095		23.042	3.6825	1	664560			63849	11192	52667	52717	70191	70191					0.11748653699351053
WLRRSFSCKRR	11	Unmodified	_WLRRSFSCKRR_					0	0	0			REV__ENST00000591822.5_1_16:5122062-5122182:+|nuORF	REV__ENST00000591822.5_1_16:5122062-5122182:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	498.9447326660156	3	498.945611	1493.815	-0.78365	-0.000391	-3.7468	-0.0018695	-4.5305	-0.0022605	498.94375426248735	81.253	6.1948	78.93	78.543	84.738	-2.3226					323	125	6	0	0	0	0.70587	1	4530	4530		27.644	2.5761	1	6828400	+		63850	27936	52668	52718	70192	70192					0.08784906227651845
WLRVTANGPF	10	Unmodified	_WLRVTANGPF_					0	0	0			REV__ENSG00000139549|ENST00000649637|DHH	REV__ENSG00000139549|ENST00000649637|DHH	MULTI-MSMS	OvCa99_classI_Rep5	1	580.8145751953125	2	580.81419	1159.61383	-1.6851	-0.00097871	0.83709	0.0004862	-0.84798	-0.00049252	580.8146546108718	63.915	0.72676	63.915	63.607	64.334	0					56	17	5	0	0	0	0.44431	1	5772	5772		62.107	1.1355	1	8999900	+		63851	19617	52669	52719	70193	70193					0.040405404628018005
WLSGPLPKR	9	Unmodified	_WLSGPLPKR_					0	0	0			REV__ENST00000327906.7_1_3:52445075-52445192:+|nuORF	REV__ENST00000327906.7_1_3:52445075-52445192:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	527.311279296875	2	527.313826	1052.6131	-0.12887	-6.7957E-05	-4.2564	-0.0022445	-4.3853	-0.0023124	527.3115940412447	45.091	0.74583	45.091	44.795	45.54	0					42	16	3	0	0	0	0.48324	1	3079	3079		44.117	1.7207	1	5423000	+		63852	24505	52670	52720	70194	70194					0.08889745813758054
WLSGPLPKR	9	Unmodified	_WLSGPLPKR_					0	0	0			REV__ENST00000327906.7_1_3:52445075-52445192:+|nuORF	REV__ENST00000327906.7_1_3:52445075-52445192:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	527.313826	1052.6131	-0.12887	-6.7957E-05	-4.2564	-0.0022445	-4.3853	-0.0023124	527.3115940412447	45.091	0.74583	45.091	44.795	45.54	0	0	0	NaN	44.117	42	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	5423000	+		63853	24505	52670	52720							0.08889745813758054
WLSLASLLV	9	Unmodified	_WLSLASLLV_					0	0	0		ENSG00000146411|ENST00000275230|SLC2A12	ENSG00000146411|ENST00000275230|SLC2A12	ENSG00000146411|ENST00000275230|SLC2A12	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.299072265625	2	501.305136	1000.59572	-1.3141	-0.00065878	-3.8156	-0.0019128	-5.1298	-0.0025716	501.3030422318759	100.83	2.3031	98.56	97.726	100.03	-2.2665					81	45	4	0	0	0	0.32337	1	9047	9047		60.294	0	1	392290			63854	5289	52671	52721	70195	70195					0.09544405488088614
WLSMALSSGCF	11	Carbamidomethyl (C),Oxidation (M)	_WLSM(Oxidation (M))ALSSGC(Carbamidomethyl (C))F_	WLSMALSSGC(1)F	WLSM(1)ALSSGCF	WLSMALSSGC(53)F	WLSM(53)ALSSGCF	0	1	1		ENST00000508973.5_1_5:21474040-21474163:+|nuORF	ENST00000508973.5_1_5:21474040-21474163:+|nuORF	ENST00000508973.5_1_5:21474040-21474163:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	637.7852172851562	2	637.780841	1273.54713	1.048	0.00066838	4.4664	0.0028486	5.5144	0.003517	637.7835771117301	141.66	1.8026	141.66	141.03	142.83	0					79	35	3	0	0	0	0.50928	1	16538	16538		52.937	6.4799	1	899210			63855	12956	52672	52722	70196	70196	152	344			-0.07870199205626704
WLSRDLLH	8	Unmodified	_WLSRDLLH_					0	0	0		ENSG00000175262|ENST00000377004|C1orf127;nc|nan|Q8N9H9|C1orf127	ENSG00000175262|ENST00000377004|C1orf127	ENSG00000175262|ENST00000377004|C1orf127	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.8154296875	2	520.287808	1038.56106	-1.2952	-0.00067387	1.5747	0.00081932	0.27956	0.00014545	520.2884907706997	66.097	0.83028	66.097	65.831	66.661	0					37	20	3	0	0	0	0.028476	1	6128	6128		51.335	17.163	1	1206700			63856	7528	52673	52723	70197	70197					0.043325824000021385
WLSRDLLH	8	Unmodified	_WLSRDLLH_					0	0	0		ENSG00000175262|ENST00000377004|C1orf127;nc|nan|Q8N9H9|C1orf127	ENSG00000175262|ENST00000377004|C1orf127	ENSG00000175262|ENST00000377004|C1orf127	MULTI-MATCH	OvCa9_classI_Rep3	3		2	520.287808	1038.56106	0.87157	0.00045347	3.6225	0.0018847	4.494	0.0023382	520.2900854108688	68.938	0.54844	66.124	65.964	66.512	-2.8143	0.013396	0.0018829	NaN	51.335	18	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14468			63857	7528	52673	52723							0.043325824000021385
WLTGDLDFI	9	Unmodified	_WLTGDLDFI_					0	0	0			REV__tr|A0A7D6VYS2|A0A7D6VYS2_9CLOTHADfamilyhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22820PE=4SV=1	REV__tr|A0A7D6VYS2|A0A7D6VYS2_9CLOTHADfamilyhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_22820PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.2724609375	2	540.274032	1078.53351	-0.46191	-0.00024956	-3.273	-0.0017683	-3.7349	-0.0020179	540.2722987651365	90.268	1.681	87.693	87.248	88.929	-2.575					92	32	4	0	0	0	0.38529	1	7776	7776		53.351	0.41475	1	589130	+		63858	31825	52674	52724	70198	70198					-0.0026136565090837394
WLVFAMKI	8	Unmodified	_WLVFAMKI_					0	0	0			REV__ENST00000519875.1_1_8:21997445-21997756:-|nuORF	REV__ENST00000519875.1_1_8:21997445-21997756:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	504.29400634765625	2	504.290974	1006.56739	0.041606	2.0981E-05	2.9515	0.0014884	2.9931	0.0015094	504.2923234370441	105.36	0.833	105.36	105	105.83	0					53	18	5	0	0	0	0.7327	1	11844	11844		8.8223	0	1	2647600	+		63859	21377	52675	52725	70199	70199					0.0643738430716212
WLVGFLQKC	9	Unmodified	_WLVGFLQKC_					0	0	0		L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|326|3|anti-sense	L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|326|3|anti-sense	L1PA13_dup1157|chr3:174452329-174457545:+|1.616039578954474|0.1858096627507961|3.12|429.0|326|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	547.3010864257812	2	547.296788	1092.57902	2.5728	0.0014081	2.4224	0.0013258	4.9952	0.0027339	547.2979602592812	27.221	0.63178	24.511	24.362	24.994	-2.7097					19	14	2	0	0	0	0.71234	1	447	447		13.775	2.2643	1	13158			63860	14658	52676	52726	70200	70200					0.036435813304706244
WLVRTMKL	8	Unmodified	_WLVRTMKL_					0	0	0			REV__ENST00000297423.8_1_8:48203675-48206584:+|nuORF	REV__ENST00000297423.8_1_8:48203675-48206584:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.8145751953125	2	523.812605	1045.61066	-0.24442	-0.00012803	2.0764	0.0010877	1.832	0.00095963	523.8136033040311	61.118	1.1115	57.688	57.345	58.456	-3.43					58	22	4	0	0	0	0.50674	1	4167	4167		76.847	0.072494	1	420560	+		63861	24210	52677	52727	70201	70201					0.089675740844541
WLWKRLQL	8	Unmodified	_WLWKRLQL_					0	0	0		ENST00000481453.5_1_16:419744-420512:-|nuORF;ENST00000461550.5_1_16:418974-420218:-|nuORF;ENST00000483764.5_1_16:418974-420218:-|nuORF;chr16:370225-370310|429|20.88|0.73|4.83|-|ENST00000450882|MRPL28,MRPL28;chr16:370225-370362|429|21.26|0.74|4.85|-|ENST00000441883|MRPL28,MRPL28;ENSG00000086504|ENST00000199706|MRPL28	ENST00000481453.5_1_16:419744-420512:-|nuORF	ENST00000481453.5_1_16:419744-420512:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	571.8449096679688	2	571.845294	1141.67603	0.88731	0.00050741	-2.5534	-0.0014602	-1.6661	-0.00095275	571.8436607097648	122.12	1.4157	121.09	120.64	122.06	-1.0286					59	26	4	0	0	0	0.7043	1	9367	9367		42.474	3.2216	1	135460			63862	379	52678	52728	70202	70202					0.11086311601798116
WLWRRRWSFFY	11	Unmodified	_WLWRRRWSFFY_					0	0	0		ENST00000374500.9_1_6:33385885-33386053:-|nuORF	ENST00000374500.9_1_6:33385885-33386053:-|nuORF	ENST00000374500.9_1_6:33385885-33386053:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	568.2974853515625	3	568.296638	1701.86809	-0.36416	-0.00020695	-1.5227	-0.00086536	-1.8869	-0.0010723	568.2958619483965	61.746	0.91955	61.746	61.458	62.378	0					54	21	4	0	0	0	0.7257	2	5448	5448;5480		6.3209	6.3209	1	3606100			63863	11037	52679	52729	70203;70204	70203					0.04522607281978708
WLWWRKTRWPW	11	Unmodified	_WLWWRKTRWPW_					0	0	0		ENST00000400979.2_1_1:166244958-166245396:-|nuORF	ENST00000400979.2_1_1:166244958-166245396:-|nuORF	ENST00000400979.2_1_1:166244958-166245396:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.2937622070312	3	567.636883	1699.88882	0.90366	0.00051295	0.35409	0.000201	1.2578	0.00071395	567.6371501895659	151.83	0.76231	151.83	151.4	152.16	0					20	15	2	0	0	0	0.026534	1	17785	17785		3.2113	1.6883	1	46968			63864	11413	52680	52730	70205	70205					0.06687197661631217
WLWWRKTRWPW	11	Unmodified	_WLWWRKTRWPW_					0	0	0		ENST00000400979.2_1_1:166244958-166245396:-|nuORF	ENST00000400979.2_1_1:166244958-166245396:-|nuORF	ENST00000400979.2_1_1:166244958-166245396:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	567.8060302734375	3	567.636883	1699.88882	-0.084044	-4.7707E-05	-3.8904	-0.0022083	-3.9744	-0.002256	567.9690065915918	70.44	0.24982	67.869	67.765	68.015	-2.5707					7	4	2	0	0	0	0.026549	1	5629	5629		3.6191	3.2477	1	6661.7			63865	11413	52680	52730	70206	70206					0.06687197661631217
WLYKYHWKWIL	11	Unmodified	_WLYKYHWKWIL_					0	0	0		nc|ENSG00000156103|P51512-2|MMP16	nc|ENSG00000156103|P51512-2|MMP16	nc|ENSG00000156103|P51512-2|MMP16	MULTI-MSMS	OvCa99_classI_Rep5	1	545.9663696289062	3	545.966007	1634.87619	-0.43243	-0.00023609	2.3678	0.0012928	1.9354	0.0010567	545.967425307043	23.751	0.43935	23.751	23.597	24.036	0					16	8	3	0	0	0	0.72582	1	369	369		1.4188	0	1	51255			63866	15112	52681	52731	70207	70207					0.08414741478736687
WLYNIVLI	8	Unmodified	_WLYNIVLI_					0	0	0		ENSG00000175893|ENST00000380916|ZDHHC21	ENSG00000175893|ENST00000380916|ZDHHC21	ENSG00000175893|ENST00000380916|ZDHHC21	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.30517578125	2	517.307678	1032.6008	-2.0457	-0.0010583	-1.689	-0.00087372	-3.7347	-0.001932	517.3066794823333	125.36	0.95676	123.94	123.62	124.58	-1.4143					43	18	3	0	0	0	0.69415	1	11906	11906		44.531	5.7249	1	135080			63867	7568	52682	52732	70208	70208					0.08580709350690086
WMALEFEIL	9	Unmodified	_WMALEFEIL_					0	0	0			REV__ENST00000518935.5_1_6:56497831-56498961:-|nuORF	REV__ENST00000518935.5_1_6:56497831-56498961:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	576.841064453125	2	576.293911	1150.57327	-0.2013	-0.00011601	1.4144	0.00081511	1.2131	0.0006991	576.2946286946749	98.079	1.0644	95.701	95.418	96.483	-2.3786					37	20	2	0	0	0	0.027462	1	8691	8691		29.15	0	1	107070	+		63868	27035	52683	52733	70209	70209					0.004004380281457998
WMEKVMLH	8	Unmodified	_WMEKVMLH_					0	0	0			REV__nc|ENSG00000105339|A2RUS2-2|DENND3	REV__nc|ENSG00000105339|A2RUS2-2|DENND3	MULTI-MSMS	OvCa9_classI_Rep4_	4	537.2655029296875	2	537.267173	1072.51979	-2.4457	-0.001314	-2.8353	-0.0015233	-5.281	-0.0028373	537.2655410604852	107.23	1.55	105.36	105.01	106.56	-1.8785					70	30	4	0	0	0	0.68714	1	9809	9809		45.952	10.8	1	684190	+		63869	17712	52684	52734	70210	70210					-0.01356637955336737
WMHLLPSL	8	Unmodified	_WMHLLPSL_					0	0	0		ENST00000336967.7_1_19:54377816-54378302:+|nuORF	ENST00000336967.7_1_19:54377816-54378302:+|nuORF	ENST00000336967.7_1_19:54377816-54378302:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.7715759277344	2	498.770406	995.526258	-0.32325	-0.00016123	2.4895	0.0012417	2.1663	0.0010805	498.77153705006515	102.43	2.0963	100.23	99.937	102.03	-2.1994					94	39	4	0	0	0	0.33727	1	9239	9239		100.27	0.89773	1	503840			63870	10517	52685	52735	70211	70211					0.028316232676957043
WMIITSIF	8	Unmodified	_WMIITSIF_					0	0	0		nc|ENSG00000114529|Q5BVD1-3|TTMP;ENST00000497610.1_1_3:111805290-111828461:+|nuORF;nc|ENSG00000114529|Q5BVD1-2|TTMP;ENSG00000114529|ENST00000264848|C3orf52	nc|ENSG00000114529|Q5BVD1-3|TTMP	nc|ENSG00000114529|Q5BVD1-3|TTMP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.82830810546875	2	505.772614	1009.53067	-0.33422	-0.00016904	-3.8153	-0.0019297	-4.1495	-0.0020987	505.7707326450577	78.211	0.76122	75.394	75.165	75.926	-2.8165					32	15	4	0	0	0	0.028476	1	6339	6339		44.531	5.5096	1	102660			63871	14971	52686	52736	70212	70212					0.026290876906045924
WMKKWWEMKRE	11	Unmodified	_WMKKWWEMKRE_					0	0	0		nc|ENSG00000130234|Q9BYF1-3|ACE2;ENSG00000130234|ENST00000252519|ACE2	nc|ENSG00000130234|Q9BYF1-3|ACE2	nc|ENSG00000130234|Q9BYF1-3|ACE2	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.6314086914062	3	546.607496	1636.80066	2.048	0.0011195	-0.90623	-0.00049535	1.1418	0.0006241	546.6062628545474	85.974	0.24153	85.974	85.791	86.033	0					9	5	3	0	0	0	0.026523	1	9029	9029		8.0344	6.7124	1	383880			63872	3971	52687	52737	70213	70213					0.007730729644435996
WMKMRKKRKRV	11	Unmodified	_WMKMRKKRKRV_					0	0	0			REV__ENST00000557802.5_1_14:24584825-24587275:+|nuORF	REV__ENST00000557802.5_1_14:24584825-24587275:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	516.3072509765625	3	516.314758	1545.92245	-6.7017	-0.0034602	-2.7389	-0.0014142	-9.4407	-0.0048743	516.3134990696393	162.76	2.1102	161.13	160.17	162.28	-1.6336					95	58	2	0	0	0	0.72573	1	16100	16100		6.001	2.7897	1	68937	+		63873	27578	52688	52738	70214	70214					0.1713215983752434
WMLDLTQAI	9	Unmodified	_WMLDLTQAI_					0	0	0		ENSG00000146477|ENST00000275300|SLC22A3	ENSG00000146477|ENST00000275300|SLC22A3	ENSG00000146477|ENST00000275300|SLC22A3	MULTI-MSMS	OvCa9_classI_Rep3	3	545.7838134765625	2	545.78371	1089.55287	1.2649	0.00069035	1.3256	0.00072348	2.5905	0.0014138	545.7840712809303	112.68	1.3472	111.6	111.32	112.66	-1.0753					69	26	5	0	0	0	0.10363	1	8249	8249		96.19	5.5896	1	305850			63874	5296	52689	52739	70215	70215					0.011672673683506218
WMLDLTQAI	9	Unmodified	_WMLDLTQAI_					0	0	0		ENSG00000146477|ENST00000275300|SLC22A3	ENSG00000146477|ENST00000275300|SLC22A3	ENSG00000146477|ENST00000275300|SLC22A3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	545.78371	1089.55287	0.3369	0.00018388	1.6926	0.00092379	2.0295	0.0011077	545.7846009768821	111.83	1.2812	111.69	111.32	112.61	-0.13961	0.045599	-5.35E-05	NaN	96.19	61	25	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	118280			63875	5296	52689	52739							0.011672673683506218
WMRRKITG	8	Unmodified	_WMRRKITG_					0	0	0		ENSG00000168575|ENST00000520262|SLC20A2	ENSG00000168575|ENST00000520262|SLC20A2	ENSG00000168575|ENST00000520262|SLC20A2	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.32470703125	2	524.297653	1046.58075	0.7833	0.00041068	0.66983	0.00035119	1.4531	0.00076187	524.2980747575743	131.35	0.61201	131.35	131.06	131.67	0					20	12	2	0	0	0	0.028476	1	15255	15255		25.45	0	1	78547			63876	6922	52690	52740	70216	70216					0.05932635139083686
WMWSWKHIRKH	11	Unmodified	_WMWSWKHIRKH_					0	0	0		nc|ENSG00000197969|Q96RL7-4|VPS13A;nc|ENSG00000197969|Q96RL7-2|VPS13A;nc|ENSG00000197969|Q96RL7-3|VPS13A;ENSG00000197969|ENST00000360280|VPS13A;VPS13A|p.L994Wfs*11|1|0.35|ENSG00000197969|chr9:77282135-77282135|T/-|frameshift_variant;VPS13A-SLC44A1|2|fusion;VPS13A-SLC44A1|1|fusion	nc|ENSG00000197969|Q96RL7-4|VPS13A;VPS13A-SLC44A1|2|fusion	nc|ENSG00000197969|Q96RL7-4|VPS13A	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.7413330078125	3	532.27859	1593.81394	-0.43972	-0.00023405	1.4927	0.00079454	1.053	0.00056048	532.2792578319214	29.33	0.19918	29.33	29.237	29.436	0					5	3	2	0	0	0	0.026534	1	1039	1039		3.2113	1.8894	1	14122			63877	8768;36300	52691	52741	70217	70217					0.04078691858762795
WMYKFRNL	8	Unmodified	_WMYKFRNL_					0	0	0			REV__ENSG00000118434|ENST00000237201|SPACA1	REV__ENSG00000118434|ENST00000237201|SPACA1	MULTI-SECPEP	OvCa99_classI_Rep5	1	578.7716674804688	2	579.299862	1156.58517	1.1093	0.00064259	4.1057	0.0023785	5.215	0.003021	579.3035309924288	109.18	0.22021	109.18	109.02	109.24	0					8	4	3	0	0	0	0.028476	1	12343	12343		35.201	22.994	1	73460	+		63878	18396	52692	52742	70218	70218					0.013140995620233298
WNAAIALALI	10	Unmodified	_WNAAIALALI_					0	0	0		ENSG00000181649|ENST00000314222|PHLDA2	ENSG00000181649|ENST00000314222|PHLDA2	ENSG00000181649|ENST00000314222|PHLDA2	MULTI-MSMS	OvCa9_classI_Rep3	3	528.315673828125	2	528.316035	1054.61752	-0.93969	-0.00049646	1.1767	0.00062168	0.23703	0.00012523	528.3165311420901	102.19	1.3583	100.67	100	101.36	-1.5211					57	25	3	0	0	0	0.64063	1	7032	7032		37.159	0	1	508870			63879	7942	52693	52743	70219	70219					0.09239210236637518
WNILKAQNPLI	11	Unmodified	_WNILKAQNPLI_					0	0	0		tr|A0A7D6VQ84|A0A7D6VQ84_9CLOTAryl-sulfatesulfotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19800PE=4SV=1	tr|A0A7D6VQ84|A0A7D6VQ84_9CLOTAryl-sulfatesulfotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19800PE=4SV=1	tr|A0A7D6VQ84|A0A7D6VQ84_9CLOTAryl-sulfatesulfotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19800PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	437.5910339355469	3	437.259079	1308.75541	-3.525	-0.0015413	-0.35709	-0.00015614	-3.8821	-0.0016975	437.25900137272055	155.13	2.0506	154.9	154.06	156.11	-0.22697					105	58	2	0	0	0	0.72507	1	15839	15839		14.694	0.60766	1	24211			63880	34828	52694	52744	70220	70220					0.1133791376530553
WNLEKMDL	8	Unmodified	_WNLEKMDL_					0	0	0		ENSG00000162951|ENST00000295057|LRRTM1;chr2:80303878-80304148|392|35.61|0.37|6.6|-|ENST00000409148|LRRTM1,LRRTM1;chr2:80299690-80301945|360|29.4|0.48|5.94|-|ENST00000433224|LRRTM1,LRRTM1;chr2:80289195-80301945|313|16.77|0.57|4.87|-|ENST00000417012|LRRTM1,LRRTM1	ENSG00000162951|ENST00000295057|LRRTM1	ENSG00000162951|ENST00000295057|LRRTM1	MULTI-MSMS	OvCa99_classI_Rep5	1	524.7625732421875	2	524.760235	1047.50592	-1.6136	-0.00084673	2.784	0.001461	1.1705	0.00061423	524.7617124656423	64.094	1.3856	64.094	63.57	64.955	0					117	33	6	0	0	0	0.45246	1	5854	5854		82.305	4.9875	1	55876000			63881	448	52695	52745	70221	70221					-0.015935921828031496
WNLVTILVL	9	Unmodified	_WNLVTILVL_					0	0	0		ENST00000449421.6_1_17:73205928-73222855:+|nuORF;ENST00000583948.5_1_17:73201841-73222120:+|nuORF;nc|ENSG00000125450|Q9BW27-3|NUP85;ENSG00000125450|ENST00000245544|NUP85	ENST00000449421.6_1_17:73205928-73222855:+|nuORF	ENST00000449421.6_1_17:73205928-73222855:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	535.8320922851562	2	535.83406	1069.65357	-1.841	-0.00098648	-1.8844	-0.0010097	-3.7254	-0.0019962	535.8326533371475	118.18	1.21	116.83	116.52	117.73	-1.3444					61	22	5	0	0	0	0.28934	1	11064	11064		64.207	4.089	1	137870			63882	3709	52696	52746	70222	70222					0.12152667413533891
WNNVLIPR	8	Unmodified	_WNNVLIPR_					0	0	0			REV__tr|A0A7D6VRA7|A0A7D6VRA7_9CLOTAlpha-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04820PE=3SV=1;REV__tr|A0A553SSJ5|A0A553SSJ5_NIACIAlpha-galactosidaseOS=NialliacirculansOX=1397GN=CEQ21_03025PE=3SV=1	REV__tr|A0A7D6VRA7|A0A7D6VRA7_9CLOTAlpha-galactosidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04820PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.8081970214844	2	506.290351	1010.56615	-0.43155	-0.00021849	-3.7912	-0.0019194	-4.2227	-0.0021379	506.2882830389598	39.265	1.2422	36.338	35.948	37.19	-2.9264					52	24	3	0	0	0	0.028476	1	1682	1682		18.324	0	1	112400	+		63883	31400;30842	52697	52747	70223	70223					0.061288862626156515
WNPHAVVAL	9	Unmodified	_WNPHAVVAL_					0	0	0		ENSG00000183665|ENST00000328599|TRMT12	ENSG00000183665|ENST00000328599|TRMT12	ENSG00000183665|ENST00000328599|TRMT12	MULTI-MSMS	OvCa9_classI_Rep4_	4	503.7759704589844	2	503.777077	1005.5396	-1.6287	-0.00082048	-2.94	-0.0014811	-4.5687	-0.0023016	503.77552955153	73.012	1.3511	69.615	69.253	70.604	-3.3961					67	27	4	0	0	0	0.32337	1	5643	5643		60.294	12.378	1	719990			63884	8094	52698	52748	70224	70224					0.03705197371277791
WNPQVNHPR	9	Unmodified	_WNPQVNHPR_					0	0	0			REV__ENSG00000165819|ENST00000298717|METTL3	REV__ENSG00000165819|ENST00000298717|METTL3	MULTI-MSMS	OvCa9_classI_Rep2	2	574.289794921875	2	574.291414	1146.56827	2.2976	0.0013195	-4.4162	-0.0025362	-2.1186	-0.0012167	574.2887813624243	26.093	0.82673	23.383	23.246	24.073	-2.7097					33	20	3	0	0	0	0.67509	1	338	338		23.042	4.7181	1	76649	+		63885	21124	52699	52749	70225	70225					0.0008531500041044637
WNPSLLYNP	9	Unmodified	_WNPSLLYNP_					0	0	0			REV__ENSG00000181234|ENST00000435159|TMEM132C	REV__ENSG00000181234|ENST00000435159|TMEM132C	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.31884765625	2	552.279649	1102.54475	2.8633	0.0015813	-0.16709	-9.2283E-05	2.6962	0.001489	552.7810631616102	135.25	0.2973	133.71	133.56	133.86	-1.5437					8	5	2	0	0	0	0.027462	1	13101	13101		32.812	16.107	1	4560.9	+		63886	22223	52700	52750	70226	70226					-0.0024254355676021078
WNRPRRRG	8	Unmodified	_WNRPRRRG_					0	0	0		ENST00000311626.8_1_17:46629537-46651367:-|nuORF	ENST00000311626.8_1_17:46629537-46651367:-|nuORF	ENST00000311626.8_1_17:46629537-46651367:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	550.26806640625	2	549.313015	1096.61148	-1.2989	-0.00071348	2.1808	0.001198	0.88196	0.00048447	549.3142781401206	135.26	0.63863	134.15	133.96	134.6	-1.1076					22	12	2	0	0	0	0.028476	1	10914	10914		19.36	4.4951	1	25152			63887	10301	52701	52751	70227	70227					0.06703549568351264
WNSDALCH	8	Unmodified	_WNSDALCH_					0	0	0		ENST00000528485.1_1_11:59496051-59496324:+|nuORF	ENST00000528485.1_1_11:59496051-59496324:+|nuORF	ENST00000528485.1_1_11:59496051-59496324:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	473.1976318359375	2	473.197802	944.381051	4.6372	0.0021943	-3.0626	-0.0014492	1.5745	0.00074506	473.19535112304294	132.37	0.66522	130.87	130.43	131.1	-1.5015					21	12	2	0	0	0	0.7224	1	12742	12742		38.806	5.9937	1	25975			63888	13255	52702	52752	70228	70228					-0.09336464599334704
WNWKPHEVSRP	11	Unmodified	_WNWKPHEVSRP_					0	0	0			REV__nc|nan|Q49A92-3|C8orf34	REV__nc|nan|Q49A92-3|C8orf34	MULTI-MSMS	OvCa99_classI_Rep5	1	479.2467346191406	3	479.245832	1434.71567	0.25412	0.00012179	1.6767	0.00080355	1.9308	0.00092534	479.2466448165482	20.899	0.2802	20.899	20.741	21.021	0					11	5	3	0	0	0	0.72458	1	67	67		21.032	1.7696	1	53249	+		63889	21054	52703	52753	70229	70229					0.01569786814525287
WPEMPSCWE	9	Unmodified	_WPEMPSCWE_					0	0	0		ENST00000467101.5_1_20:60776216-60776357:+|nuORF	ENST00000467101.5_1_20:60776216-60776357:+|nuORF	ENST00000467101.5_1_20:60776216-60776357:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.8021240234375	2	582.728077	1163.4416	1.1183	0.00065164	2.4179	0.001409	3.5362	0.0020606	582.7287819580629	147.48	0.24033	147.48	147.41	147.65	0					7	4	2	0	0	0	0.027462	1	17274	17274		33.516	3.0119	1	60616			63890	12303	52704	52754	70230	70230					-0.13358115331266163
WPFSSNPGL	9	Unmodified	_WPFSSNPGL_					0	0	0			REV__ENST00000301067.11_1_12:49431153-49431393:-|nuORF	REV__ENST00000301067.11_1_12:49431153-49431393:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.704345703125	2	502.745442	1003.47633	-0.30949	-0.00015559	-3.8313	-0.0019262	-4.1408	-0.0020818	502.7435126844682	56.241	0.65064	56.241	56.011	56.662	0					27	15	3	0	0	0	0.02741	1	4640	4640		71.296	28.821	1	1943700	+		63891	24246	52705	52755	70231	70231					-0.025267881366062284
WPGGGRGRGR	10	Unmodified	_WPGGGRGRGR_					0	0	0		nc|ENSG00000100288|Q9Y259-2|CHKB;ENST00000492556.5_1_22:51020829-51021234:-|nuORF	nc|ENSG00000100288|Q9Y259-2|CHKB	nc|ENSG00000100288|Q9Y259-2|CHKB	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.2852783203125	2	528.283923	1054.55329	-0.42245	-0.00022318	1.8902	0.00099854	1.4677	0.00077537	528.284824410708	142.01	0.99675	140.54	140.24	141.23	-1.4627					54	18	4	0	0	0	0.62668	1	13914	13914		38.806	3.1879	1	263670			63892	12726	52706	52756	70232	70232					0.028198679230627022
WPGIVSVPAPC	11	Unmodified	_WPGIVSVPAPC_					0	0	0		ENSG00000134627|ENST00000299001|PIWIL4	ENSG00000134627|ENST00000299001|PIWIL4	ENSG00000134627|ENST00000299001|PIWIL4	MULTI-MSMS	OvCa99_classI_Rep5	1	563.2955932617188	2	563.291702	1124.56885	1.464	0.00082464	3.4099	0.0019208	4.8738	0.0027454	563.293537841004	142.36	2.6625	142.36	141.93	144.6	0					88	53	2	0	0	0	0.40225	2	16640	16640;16688		60.972	16.595	1	1021600			63893	4313	52707	52757	70233;70234	70233					0.011549736052529624
WPHRAAVLL	9	Unmodified	_WPHRAAVLL_					0	0	0			REV__chr11:76194844-76195255|173|10.36|0.61|4.07|-|2|TE_info:MLT1C,MLT1C_dup12967,ERVL-MaLR,LTR,donor,+,76195255,76195657|WNT11,None|4	REV__chr11:76194844-76195255|173|10.36|0.61|4.07|-|2|TE_info:MLT1C,MLT1C_dup12967,ERVL-MaLR,LTR,donor,+,76195255,76195657|WNT11,None|4	MSMS	OvCa9_classI_Rep4_	4	531.8165893554688	2	531.813993	1061.61343	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.91	1	135.37	134.87	135.87	-1.5437								0	0	0	0.18309	1	13294	13294		30.504	0.18592	1		+		63894	15870	52708	52758	70235	70235					0.08509165533587293
WPISLNLYL	9	Unmodified	_WPISLNLYL_					0	0	0		L1ME3D_dup2897|chr11:77321448-77321863:+|1.1025883766517437|0.4690870771856612|1.23|429.0|19|3|sense	L1ME3D_dup2897|chr11:77321448-77321863:+|1.1025883766517437|0.4690870771856612|1.23|429.0|19|3|sense	L1ME3D_dup2897|chr11:77321448-77321863:+|1.1025883766517437|0.4690870771856612|1.23|429.0|19|3|sense	MSMS	OvCa99_classI_Rep5	1	559.8171997070312	2	559.815867	1117.61718	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.79	1	141.79	141.29	142.29	0								0	0	0	0.18042	1	16564	16564		34.173	2.2177	1				63895	14617	52709	52759	70236	70236					0.06307790516780187
WPKNGLVL	8	Unmodified	_WPKNGLVL_					0	0	0		nc|ENSG00000213390|Q14CB8-5|ARHGAP19	nc|ENSG00000213390|Q14CB8-5|ARHGAP19	nc|ENSG00000213390|Q14CB8-5|ARHGAP19	MULTI-SECPEP	OvCa9_classI_Rep4_	4	464.7654113769531	2	463.776545	925.538538	-1.1857	-0.00054991	-2.7135	-0.0012584	-3.8992	-0.0018083	463.7751315127356	53.43	1.2278	50.222	49.944	51.171	-3.208					62	23	4	0	0	0	0.028476	1	3299	3299		35.201	0	1	315550			63896	15306	52710	52760	70237	70237					0.07278983002368022
WPLCVVNWH	9	Unmodified	_WPLCVVNWH_					0	0	0			REV__ENST00000538304.1_1_12:8538311-8538362:-|nuORF	REV__ENST00000538304.1_1_12:8538311-8538362:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	577.2828979492188	2	577.284211	1152.55387	-1.2358	-0.0007134	-0.47396	-0.00027361	-1.7097	-0.00098701	577.2838582141951	36.953	0.54641	36.953	36.751	37.298	0					29	11	4	0	0	0	0.44294	1	1988	1988		47.916	1.9434	1	506740	+		63897	27323	52711	52761	70238	70238					-0.016304734720961278
WPLEVPETE	9	Unmodified	_WPLEVPETE_					0	0	0		ENSG00000100225|ENST00000266087|FBXO7	ENSG00000100225|ENST00000266087|FBXO7	ENSG00000100225|ENST00000266087|FBXO7	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.2666625976562	2	550.268947	1098.52334	0.207	0.00011391	-3.9203	-0.0021572	-3.7133	-0.0020433	550.2666821383556	141.99	0.84273	140.52	140.29	141.13	-1.4627					37	15	3	0	0	0	0.59983	1	13904	13904		31.955	0.42505	1	91853			63898	2029	52712	52762	70239	70239					-0.021979733761327225
WPLPRSWWDRW	11	Unmodified	_WPLPRSWWDRW_					0	0	0		ENST00000552050.5_2_17:3593972-3595295:-|nuORF	ENST00000552050.5_2_17:3593972-3595295:-|nuORF	ENST00000552050.5_2_17:3593972-3595295:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	529.26806640625	3	528.933477	1583.7786	-1.093	-0.00057813	1.6562	0.00087601	0.56316	0.00029788	528.9343898811384	27.588	0.7499	27.588	27.291	28.041	0					36	14	5	0	0	0	0.72516	1	826	826		13.508	4.2961	1	643090			63899	13610	52713	52763	70240	70240					0.010063526025533065
WPLTPRGGDL	10	Unmodified	_WPLTPRGGDL_					0	0	0		ENST00000301327.4_1_8:145734459-145734825:+|nuORF	ENST00000301327.4_1_8:145734459-145734825:+|nuORF	ENST00000301327.4_1_8:145734459-145734825:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	556.297119140625	2	556.298373	1110.58219	-3.9321	-0.0021874	1.7353	0.00096534	-2.1968	-0.0012221	556.2991914868587	146.26	1.5443	145.3	144.9	146.44	-0.95946					66	30	3	0	0	0	0.6104	1	12273	12273		40.778	1.972	1	177360			63900	10185	52714	52764	70241	70241					0.03132547708855782
WPMRKKRPIA	10	Unmodified	_WPMRKKRPIA_					0	0	0			REV__ENST00000368194.7_1_1:156921476-156926255:-|nuORF	REV__ENST00000368194.7_1_1:156921476-156926255:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8829345703125	2	641.881884	1281.74922	-1.8585	-0.0011929	3.0085	0.0019311	1.15	0.00073819	641.8836457762243	148.91	0.99602	147.48	146.88	147.87	-1.4344					50	20	3	0	0	0	0.81992	1	14698	14698		16.473	1.6083	1	64864	+		63901	24914	52715	52765	70242	70242					0.11961117052783266
WPMRKKRPIA	10	Unmodified	_WPMRKKRPIA_					0	0	0			REV__ENST00000368194.7_1_1:156921476-156926255:-|nuORF	REV__ENST00000368194.7_1_1:156921476-156926255:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8823852539062	2	641.881884	1281.74922	-2.5182	-0.0016164	3.1242	0.0020053	0.60599	0.00038898	641.8839546837315	150.47	2.9704	149.03	147.78	150.75	-1.4344					235	64	4	0	0	0	0.81289	1	14780	14780		17.365	1.7232	1	344900	+		63902	24914	52715	52765	70243	70243					0.11961117052783266
WPREGIKVL	9	Unmodified	_WPREGIKVL_					0	0	0			REV__nc|ENSG00000164125|Q6UWH4-3|GASK1B	REV__nc|ENSG00000164125|Q6UWH4-3|GASK1B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	550.3046875	2	549.326934	1096.63931	-0.63326	-0.00034787	-3.174	-0.0017436	-3.8073	-0.0020914	549.324876669961	63.01	0.81849	59.535	59.242	60.061	-3.475					37	16	3	0	0	0	0.027455	1	4471	4471		60.972	2.19	1	90229	+		63903	20946	52716	52766	70244	70244					0.0948601498523658
WPREGIKVL	9	Unmodified	_WPREGIKVL_					0	0	0			REV__nc|ENSG00000164125|Q6UWH4-3|GASK1B	REV__nc|ENSG00000164125|Q6UWH4-3|GASK1B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	549.326934	1096.63931	-1.2887	-0.0007079	-1.7726	-0.00097373	-3.0613	-0.0016816	549.3257455084915	62.167	1.002	59.407	58.935	59.937	-2.7593	-0.064133	0.00069482	NaN	60.972	37	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51136	+		63904	20946	52716	52766							0.0948601498523658
WPRRGNSPW	9	Unmodified	_WPRRGNSPW_					0	0	0			REV__ENST00000505125.5_1_4:54244005-54244215:+|nuORF	REV__ENST00000505125.5_1_4:54244005-54244215:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2891845703125	2	578.293956	1154.57336	-7.6021	-0.0043963	0.12822	7.4148E-05	-7.4739	-0.0043221	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.55588	1	14079	14079		37.159	0	1	1429200	+		63905	26872	52717	52767	70245	70245					0.002256188630553879
WPSNGRRPW	9	Unmodified	_WPSNGRRPW_					0	0	0		ENST00000505125.5_1_4:54244005-54244215:+|nuORF	ENST00000505125.5_1_4:54244005-54244215:+|nuORF	ENST00000505125.5_1_4:54244005-54244215:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	578.2901611328125	2	578.293956	1154.57336	-5.4888	-0.0031741	-1.8948	-0.0010957	-7.3835	-0.0042699	578.2927598597663	159.22	4.1126	158.99	158.53	162.64	-0.22697					262	82	5	0	0	0	0.59259	1	16329	16329		32.812	3.6629	1	1073400			63906	12890	52718	52768	70246	70246					0.002256188630553879
WPSNGRRPW	9	Unmodified	_WPSNGRRPW_					0	0	0		ENST00000505125.5_1_4:54244005-54244215:+|nuORF	ENST00000505125.5_1_4:54244005-54244215:+|nuORF	ENST00000505125.5_1_4:54244005-54244215:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2886352539062	2	578.293956	1154.57336	-7.6021	-0.0043963	0.12822	7.4148E-05	-7.4739	-0.0043221	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.40667	4	14094	13600;13676;14057;14094		51.335	12.083	1	1429200			63907	12890	52718	52768	70247;70248;70249;70250	70250					0.002256188630553879
WPSSLWGKTF	10	Unmodified	_WPSSLWGKTF_					0	0	0			REV__ENST00000330714.7_1_21:42780169-42780397:+|nuORF	REV__ENST00000330714.7_1_21:42780169-42780397:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	604.8062744140625	2	604.808574	1207.60259	3.8018	0.0022994	-1.586	-0.00095925	2.2158	0.0013401	604.8074138407496	59.464	0.50061	56.365	56.176	56.677	-3.0993					17	11	2	0	0	0	0.80581	1	1952	1952		18.262	3.3972	1	11345	+		63908	24530	52719	52769	70251	70251					0.007097183686482822
WPSSLWGKTF	10	Unmodified	_WPSSLWGKTF_					0	0	0			REV__ENST00000330714.7_1_21:42780169-42780397:+|nuORF	REV__ENST00000330714.7_1_21:42780169-42780397:+|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep3	3		2	604.808574	1207.60259	3.8018	0.0022994	-1.586	-0.00095925	2.2158	0.0013401	604.8074138407496	59.464	0.50061	56.365	56.176	56.677	-3.0993	-0.029364	-0.0021095	NaN	18.262	17	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11345	+		63909	24530	52719	52769							0.007097183686482822
WPSSLWGKTF	10	Unmodified	_WPSSLWGKTF_					0	0	0			REV__ENST00000330714.7_1_21:42780169-42780397:+|nuORF	REV__ENST00000330714.7_1_21:42780169-42780397:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	604.808574	1207.60259	0.96385	0.00058294	2.5532	0.0015442	3.517	0.0021271	604.8090119290607	59.827	1.4782	56.424	55.843	57.322	-3.4029	0.029364	0.0028973	NaN	18.262	40	29	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	72541	+		63910	24530	52719	52769							0.007097183686482822
WPWRTKRWWLW	11	Unmodified	_WPWRTKRWWLW_					0	0	0			REV__ENST00000400979.2_1_1:166244958-166245396:-|nuORF	REV__ENST00000400979.2_1_1:166244958-166245396:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.8062744140625	3	567.636883	1699.88882	0.24938	0.00014156	-2.3737	-0.0013474	-2.1243	-0.0012058	567.63546060759	70.935	0.75414	68.215	68.06	68.814	-2.7196					20	14	2	0	0	0	0.026559	1	3261	3261		1.523	1.1516	1	11980	+		63911	25407	52720	52770	70252	70252					0.06687197661631217
WPWRTKRWWLW	11	Unmodified	_WPWRTKRWWLW_					0	0	0			REV__ENST00000400979.2_1_1:166244958-166245396:-|nuORF	REV__ENST00000400979.2_1_1:166244958-166245396:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	567.636883	1699.88882	0.1571	8.9177E-05	-2.3546	-0.0013366	-2.1975	-0.0012474	567.6355962922471	70.847	0.46662	68.276	68.063	68.53	-2.5707	0.030217	2.4597E-05	NaN	1.523	11	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9435.7	+		63912	25407	52720	52770							0.06687197661631217
WPWRWCWRRWA	11	Unmodified	_WPWRWCWRRWA_					0	0	0			REV__nc|ENSG00000127252|Q9HDD0-2|PLAAT1	REV__nc|ENSG00000127252|Q9HDD0-2|PLAAT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	564.2484130859375	3	563.610451	1687.80952	0.60521	0.0003411	-3.5383	-0.0019942	-2.9331	-0.0016531	563.9426951945405	62.366	0.45603	62.366	62.165	62.621	0					26	10	4	0	0	0	0.02653	1	5564	5564		3.4087	1.99	1	527220	+		63913	28837	52721	52771	70253	70253					-0.006867725641541256
WQEGDDPLD	9	Unmodified	_WQEGDDPLD_					0	0	0		ENST00000512908.2_1_5:70398727-70422449:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP;ENSG00000249437|ENST00000517649|NAIP	ENST00000512908.2_1_5:70398727-70422449:-|nuORF	ENST00000512908.2_1_5:70398727-70422449:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	536.8159790039062	2	537.722361	1073.43017	-2.8966	-0.0015576	-2.5371	-0.0013643	-5.4337	-0.0029218	537.72062720025	126.57	0.39651	125.16	125.02	125.41	-1.4143					15	7	3	0	0	0	0.027462	1	12062	12062		19.104	8.9188	1	15406			63914	9409	52722	52772	70254	70254					-0.10360897829377791
WQEGDDPLD	9	Unmodified	_WQEGDDPLD_					0	0	0		ENST00000512908.2_1_5:70398727-70422449:-|nuORF;ENST00000511830.2_1_5:69390488-69422514:-|nuORF;nc|ENSG00000249437|Q13075-2|NAIP;ENSG00000249437|ENST00000517649|NAIP	ENST00000512908.2_1_5:70398727-70422449:-|nuORF	ENST00000512908.2_1_5:70398727-70422449:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	537.722361	1073.43017	2.4684	0.0013273	-8.1065	-0.0043591	-5.6381	-0.0030317	537.7179873866933	126.31	0.47225	125.24	124.97	125.44	-1.0715	0.039848	-0.0013851	NaN	23.523	15	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17825			63915	9409	52722	52772							-0.10360897829377791
WQKANKLVIR	10	Unmodified	_WQKANKLVIR_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OvCa9_classI_Rep3	3	628.3823852539062	2	628.385314	1254.75608	-4.0512	-0.0025457	-0.39444	-0.00024786	-4.4456	-0.0027935	628.3849132400738	150.53	4.7174	149.58	148	152.71	-0.95647					178	94	2	0	0	0	0.78463	1	12711	12711		20.947	1.8434	1	419100			63916	5793;36288	52723	52773	70255	70255					0.13888753204946624
WQLKVIENV	9	Unmodified	_WQLKVIENV_					0	0	0		nc|ENSG00000214655|A7E2V4-4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4-5|ZSWIM8;nc|ENSG00000214655|A7E2V4-2|ZSWIM8;ZSWIM8|p.A1142Efs*3|1|0.08|ENSG00000214655|chr10:73797383-73797384|CC/-|frameshift_variant	nc|ENSG00000214655|A7E2V4-4|ZSWIM8	nc|ENSG00000214655|A7E2V4-4|ZSWIM8	MSMS	OvCa99_classI_Rep5	1	564.8248901367188	2	564.824224	1127.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.3	1	110.3	109.8	110.8	0								0	0	0	0.042186	1	12515	12515		80.455	16.921	1				63917	9177	52724	52774	70256	70256					0.07518291402743671
WQLKVIENV	9	Unmodified	_WQLKVIENV_					0	0	0		nc|ENSG00000214655|A7E2V4-4|ZSWIM8;nc|ENSG00000214655|A7E2V4-3|ZSWIM8;nc|ENSG00000214655|A7E2V4|ZSWIM8;ENSG00000214655|ENST00000604729|ZSWIM8;nc|ENSG00000214655|A7E2V4-5|ZSWIM8;nc|ENSG00000214655|A7E2V4-2|ZSWIM8;ZSWIM8|p.A1142Efs*3|1|0.08|ENSG00000214655|chr10:73797383-73797384|CC/-|frameshift_variant	nc|ENSG00000214655|A7E2V4-4|ZSWIM8	nc|ENSG00000214655|A7E2V4-4|ZSWIM8	MSMS	OvCa99_classI_Rep5	1	564.8258056640625	2	564.824224	1127.63389	NaN	NaN	NaN	NaN	NaN	NaN	NaN	110.49	1	110.49	109.99	110.99	0								0	0	0	0.028307	1	12539	12539		90.601	16.436	1				63918	9177	52724	52774	70257	70257					0.07518291402743671
WQLPATRKQ	9	Unmodified	_WQLPATRKQ_					0	0	0			REV__ENST00000551108.1_1_12:29542438-29639896:+|nuORF	REV__ENST00000551108.1_1_12:29542438-29639896:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	564.3231811523438	2	564.31964	1126.62473	3.1763	0.0017924	3.3999	0.0019186	6.5762	0.0037111	564.3213788592631	26.344	0.90757	23.635	23.418	24.326	-2.7097					50	25	3	0	0	0	0.7044	1	395	395		16.473	1.6083	1	124260	+		63919	27483	52725	52775	70258	70258					0.06647942837071241
WQQKAQMV	8	Unmodified	_WQQKAQMV_					0	0	0		ENSG00000147065|ENST00000360270|MSN;ENST00000511640.1_1_5:25910858-25911257:+|nuORF	ENSG00000147065|ENST00000360270|MSN	ENSG00000147065|ENST00000360270|MSN	MULTI-MSMS	OvCa99_classI_Rep5	1	509.7606201171875	2	509.760569	1017.50659	0.14431	7.3565E-05	-0.15588	-7.9461E-05	-0.011568	-5.8968E-06	509.76039394382036	57.243	0.72803	57.243	57.004	57.732	0					36	16	3	0	0	0	0.59148	1	4794	4794		65.803	7.5569	1	3031800			63920	5327	52726	52776	70259	70259					-0.0014675274308046937
WQRRRWLRPTR	11	Unmodified	_WQRRRWLRPTR_					0	0	0		nc|ENSG00000105618|Q8WWY3-2|PRPF31	nc|ENSG00000105618|Q8WWY3-2|PRPF31	nc|ENSG00000105618|Q8WWY3-2|PRPF31	MULTI-SECPEP	OvCa9_classI_Rep3	3	537.8057250976562	3	537.646553	1609.91783	1.6926	0.00091	-3.83	-0.0020592	-2.1375	-0.0011492	537.6444350014282	69.72	0.45033	67	66.806	67.256	-2.7196					12	8	2	0	0	0	0.026461	1	3152	3152		8.7993	5.7733	1	11095			63921	14939	52727	52777	70260	70260					0.1372673501061854
WQSSETRSI	9	Unmodified	_WQSSETRSI_					0	0	0		nc|ENSG00000168066|Q15637-4|SF1;nc|ENSG00000168066|Q15637-6|SF1;nc|ENSG00000168066|Q15637-7|SF1;nc|ENSG00000168066|Q15637-3|SF1;nc|ENSG00000168066|Q15637-2|SF1;ENSG00000168066|ENST00000377390|SF1;nc|ENSG00000168066|Q15637-5|SF1	nc|ENSG00000168066|Q15637-4|SF1	nc|ENSG00000168066|Q15637-4|SF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.8372192382812	2	547.26727	1092.51999	-0.52073	-0.00028498	-0.21259	-0.00011634	-0.73332	-0.00040132	547.2671331579916	55.866	0.65908	55.866	55.641	56.3	0					26	15	3	0	0	0	0.027304	1	4607	4607		67.494	37.176	1	789350			63922	6871	52728	52778	70261	70261					-0.022572234301378558
WQTLITLL	8	Unmodified	_WQTLITLL_					0	0	0			REV__ENST00000510937.1_1_5:137143741-137143912:+|nuORF	REV__ENST00000510937.1_1_5:137143741-137143912:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	494.29937744140625	2	494.29731	986.580068	1.2688	0.00062718	0.88964	0.00043975	2.1585	0.0010669	494.29754256948564	138.52	0.57443	138.52	138.31	138.88	0					20	11	3	0	0	0	0.7224	1	16165	16165		38.806	0	1	104990	+		63923	26949	52729	52779	70262	70262					0.08624118971033568
WQWRRRRRRRK	11	Unmodified	_WQWRRRRRRRK_					0	0	0			REV__ENST00000487093.5_1_3:51575631-51661706:+|nuORF	REV__ENST00000487093.5_1_3:51575631-51661706:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.7283935546875	4	435.764904	1739.03051	-0.45583	-0.00019864	4.1496	0.0018083	3.6938	0.0016096	435.7670018680176	53.79	0.25364	50.542	50.314	50.568	-3.2474					6	4	2	0	0	0	0.026541	1	3291	3291		1.1482	0	1	9122.8	+		63924	26597	52730	52780	70263	70263					0.19055428527281038
WRAPEAALRP	10	Unmodified	_WRAPEAALRP_					0	0	0		nc|ENSG00000172428|Q8WXC6-1|COPS9	nc|ENSG00000172428|Q8WXC6-1|COPS9	nc|ENSG00000172428|Q8WXC6-1|COPS9	MULTI-MSMS	OvCa9_classI_Rep4_	4	583.8258056640625	2	583.825089	1165.63563	-2.806	-0.0016382	0.9588	0.00055977	-1.8472	-0.0010785	583.8256020803484	108.26	1.2557	106.54	106.27	107.52	-1.7256					73	24	4	0	0	0	0.47142	1	9898	9898		58.23	1.5089	1	542120			63925	15181	52731	52781	70264	70264					0.05943345211358064
WRARRWRWWRN	11	Unmodified	_WRARRWRWWRN_					0	0	0			REV__nc|ENSG00000171160|Q8NDC4-2|MORN4	REV__nc|ENSG00000171160|Q8NDC4-2|MORN4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	432.91644287109375	4	432.98563	1727.91341	-0.18247	-7.9006E-05	-1.0273	-0.00044481	-1.2098	-0.00052382	433.23541907359737	55.509	0.15011	52.214	52.11	52.26	-3.2944					4	2	2	0	0	0	0.026553	1	3499	3499		1.3219	0	1	6940.2	+		63926	29003	52732	52782	70265	70265					0.07857270587714993
WRAVPRLSLRL	11	Unmodified	_WRAVPRLSLRL_					0	0	0		nc|ENSG00000090539|Q9H2X0-5|CHRD;ENSG00000090539|ENST00000204604|CHRD;ENST00000460627.5_1_3:184100167-184100350:+|nuORF;nc|ENSG00000090539|Q9H2X0-4|CHRD;ENST00000470150.5_1_3:184098136-184100834:+|nuORF	nc|ENSG00000090539|Q9H2X0-5|CHRD	nc|ENSG00000090539|Q9H2X0-5|CHRD	MULTI-SECPEP	OvCa9_classI_Rep4_	4	457.2834777832031	3	456.285851	1365.83572	0.54302	0.00024777	-1.6277	-0.00074269	-1.0847	-0.00049492	456.28511975128595	60.022	0.98307	56.592	56.16	57.144	-3.43					28	19	2	0	0	0	0.025908	1	3991	3991		21.78	5.2506	1	45927			63927	1842	52733	52783	70266	70266					0.16743819878979593
WRDRTVSLRRN	11	Unmodified	_WRDRTVSLRRN_					0	0	0		ENST00000296603.4_1_5:36151795-36151909:-|nuORF	ENST00000296603.4_1_5:36151795-36151909:-|nuORF	ENST00000296603.4_1_5:36151795-36151909:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	486.9580993652344	3	486.939402	1457.79638	-4.6558	-0.0022671	2.5082	0.0012213	-2.1477	-0.0010458	487.27486151735843	158.53	0.5367	158.3	158.09	158.63	-0.22696					14	11	2	0	0	0	0.026448	1	16088	16088		13.508	6.1082	1	11125			63928	10142	52734	52784	70267	70267					0.08579067857453992
WREEEERRRWY	11	Unmodified	_WREEEERRRWY_					0	0	0			REV__ENSG00000056097|ENST00000265069|ZFR	REV__ENSG00000056097|ENST00000265069|ZFR	MULTI-SECPEP	OvCa9_classI_Rep4_	4	424.8902282714844	4	424.45911	1693.80734	-0.10929	-4.639E-05	1.2392	0.000526	1.1299	0.00047961	424.45964246766954	21.684	0.55696	20.346	20.017	20.574	-1.3386					20	10	3	0	0	0	0.02653	1	164	164		3.4087	3.0373	1	23175	+		63929	16715	52735	52785	70268	70268					-0.011815745589501603
WRFHTKYMMWF	11	Unmodified	_WRFHTKYMMWF_					0	0	0		ENSG00000088038|ENST00000221232|CNOT3	ENSG00000088038|ENST00000221232|CNOT3	ENSG00000088038|ENST00000221232|CNOT3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	409.91900634765625	4	408.945522	1631.75298	0.84631	0.0003461	0.75314	0.00030799	1.5995	0.00065409	408.94590263066334	21.119	1.6201	19.78	19.005	20.625	-1.3386					82	32	3	0	0	0	0.02642	1	153	153		10.104	6.4848	1	68765			63930	1781	52736	52786	70269	70269					-0.037625812357191535
WRFLKQFRRQR	11	Unmodified	_WRFLKQFRRQR_					0	0	0			REV__ENST00000479859.1_1_2:24199858-24199963:+|nuORF	REV__ENST00000479859.1_1_2:24199858-24199963:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	540.9856567382812	3	540.983054	1619.92733	2.6295	0.0014225	2.286	0.0012367	4.9156	0.0026592	540.9842345041635	25.895	1.1084	23.185	22.938	24.047	-2.7097					63	26	4	0	0	0	0.72582	1	300	300		1.4188	0.096825	1	126350	+		63931	25903	52737	52787	70270	70270					0.1421650329612021
WRFPGLLLA	9	Unmodified	_WRFPGLLLA_					0	0	0		ENST00000469535.5_1_1:207925470-207933074:+|nuORF;nc|ENSG00000117335|P15529-6|CD46;nc|ENSG00000117335|P15529|CD46;nc|ENSG00000117335|P15529-10|CD46;nc|ENSG00000117335|P15529-5|CD46;nc|ENSG00000117335|P15529-3|CD46;nc|ENSG00000117335|P15529-13|CD46;ENSG00000117335|ENST00000367042|CD46;nc|ENSG00000117335|P15529-4|CD46;nc|ENSG00000117335|P15529-16|CD46;nc|ENSG00000117335|P15529-8|CD46;nc|ENSG00000117335|P15529-14|CD46;nc|ENSG00000117335|P15529-12|CD46;nc|ENSG00000117335|P15529-7|CD46;nc|ENSG00000117335|P15529-9|CD46;nc|ENSG00000117335|P15529-15|CD46;nc|ENSG00000117335|P15529-2|CD46	ENST00000469535.5_1_1:207925470-207933074:+|nuORF	ENST00000469535.5_1_1:207925470-207933074:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	536.8199462890625	2	536.818744	1071.62294	1.2276	0.00065898	0.87716	0.00047088	2.1047	0.0011299	536.8191652975587	143.35	1.0335	143.35	142.98	144.01	0					60	20	4	0	0	0	0.58665	1	16742	16742		33.516	3.0119	1	328140			63932	3249	52738	52788	70271	70271					0.08998933819157173
WRFWRICKYKW	11	Unmodified	_WRFWRICKYKW_					0	0	0		ENST00000419746.5_1_2:179403628-179404009:+|nuORF	ENST00000419746.5_1_2:179403628-179404009:+|nuORF	ENST00000419746.5_1_2:179403628-179404009:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.8405151367188	3	557.962491	1670.86564	-0.37209	-0.00020761	-3.24	-0.0018078	-3.6121	-0.0020154	557.9605220196096	26.065	0.34975	26.065	25.943	26.292	0					13	6	4	0	0	0	0.026553	1	650	650		3.2113	0.18535	1	45565			63933	11654	52739	52789	70272	70272					0.0570443555266138
WRIVRLQQL	9	Unmodified	_WRIVRLQQL_					0	0	0		ENST00000392396.7_2_3:195796375-195798346:-|nuORF	ENST00000392396.7_2_3:195796375-195798346:-|nuORF	ENST00000392396.7_2_3:195796375-195798346:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	606.3695678710938	2	606.372207	1210.72986	-3.14	-0.001904	-1.1627	-0.00070505	-4.3027	-0.0026091	606.3713864863669	147.53	4.4729	147.31	146.07	150.55	-0.22696					275	89	4	0	0	0	0.70177	1	14886	14886		17.365	0.89182	1	257720			63934	11221	52740	52790	70273	70273					0.13292484033490837
WRIVRLQQL	9	Unmodified	_WRIVRLQQL_					0	0	0		ENST00000392396.7_2_3:195796375-195798346:-|nuORF	ENST00000392396.7_2_3:195796375-195798346:-|nuORF	ENST00000392396.7_2_3:195796375-195798346:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	606.3704833984375	2	606.372207	1210.72986	-2.264	-0.0013728	-2.13	-0.0012916	-4.394	-0.0026644	606.3707790059369	147.83	4.41	146.88	145.7	150.11	-0.9512					268	87	4	0	0	0	0.6653	1	12523	12523		24.203	1.1603	1	205770			63935	11221	52740	52790	70274	70274					0.13292484033490837
WRIVRLQQL	9	Unmodified	_WRIVRLQQL_					0	0	0		ENST00000392396.7_2_3:195796375-195798346:-|nuORF	ENST00000392396.7_2_3:195796375-195798346:-|nuORF	ENST00000392396.7_2_3:195796375-195798346:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.369384765625	2	606.372207	1210.72986	-2.0217	-0.0012259	-2.3109	-0.0014013	-4.3326	-0.0026272	606.3706888805716	149.57	2.6994	148.14	147.52	150.22	-1.4344					165	58	4	0	0	0	0.6653	1	14726	14726		24.203	1.6231	1	304910			63936	11221	52740	52790	70275	70275					0.13292484033490837
WRKEKEQQL	9	Unmodified	_WRKEKEQQL_					0	0	0		ENSG00000132424|ENST00000369239|PNISR	ENSG00000132424|ENST00000369239|PNISR	ENSG00000132424|ENST00000369239|PNISR	MULTI-MSMS	OvCa99_classI_Rep5	1	622.8397827148438	2	622.840936	1243.66732	-0.51444	-0.00032042	0.11871	7.3939E-05	-0.39573	-0.00024648	622.8410092065224	33.409	0.68881	33.409	33.087	33.776	0					30	13	4	0	0	0	0.32653	1	1535	1535		52.937	13.684	1	391260			63937	4138	52741	52791	70276	70276					0.05523293174655919
WRKLKRDFRQR	11	Unmodified	_WRKLKRDFRQR_					0	0	0			REV__nc|ENSG00000244754|Q92802-2|N4BP2L2	REV__nc|ENSG00000244754|Q92802-2|N4BP2L2	MULTI-MSMS	OvCa99_classI_Rep5	1	530.3148193359375	3	530.314692	1587.92225	0.13549	7.1854E-05	-1.1172	-0.00059248	-0.98174	-0.00052063	530.3140377729728	20.477	0.29605	20.477	20.352	20.648	0					29	10	4	0	0	0	0.72582	1	28	28		3.6191	0.21035	1	113150	+		63938	29165	52742	52792	70277	70277					0.1518019943350737
WRLCGAAALAG	11	Unmodified	_WRLCGAAALAG_					0	0	0		ENST00000471661.5_1_2:96455422-96457958:+|nuORF;ENST00000359548.8_1_2:96698116-96700654:-|nuORF;ENST00000486463.5_1_2:96693672-96700654:-|nuORF	ENST00000471661.5_1_2:96455422-96457958:+|nuORF	ENST00000471661.5_1_2:96455422-96457958:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	544.7832641601562	2	544.787118	1087.55968	-5.2263	-0.0028472	0.56342	0.00030694	-4.6629	-0.0025403	544.7872760612969	159.58	0.7265	159.35	159	159.73	-0.22696					22	14	2	0	0	0	0.70518	1	16223	16223		27.882	0.83493	1	23423			63939	10753	52743	52793	70278	70278					0.01940625039560473
WRLEEKPLE	9	Unmodified	_WRLEEKPLE_					0	0	0		nc|ENSG00000268500|O15389|SIGLEC5	nc|ENSG00000268500|O15389|SIGLEC5	nc|ENSG00000268500|O15389|SIGLEC5	MULTI-MSMS	OvCa9_classI_Rep2	2	600.3215942382812	2	600.324588	1198.63462	-3.9025	-0.0023427	2.2864	0.0013726	-1.6161	-0.00097019	600.3257925158986	151.56	1.1868	151.34	150.94	152.13	-0.22696					55	23	3	0	0	0	0.69403	1	15438	15438		19.997	0	1	109540			63940	15369	52744	52794	70279	70279					0.043250860517900946
WRLNLRLT	8	Unmodified	_WRLNLRLT_					0	0	0		ENST00000515519.5_1_5:148443155-148450922:+|nuORF	ENST00000515519.5_1_5:148443155-148450922:+|nuORF	ENST00000515519.5_1_5:148443155-148450922:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.3605346679688	2	536.324725	1070.6349	1.0144	0.00054404	3.6006	0.0019311	4.615	0.0024751	536.3266455104485	154.28	0.44536	154.28	154.07	154.52	0					12	8	2	0	0	0	0.028476	1	18097	18097		34.173	0	1	42846			63941	13048	52745	52795	70280	70280					0.10240550562298267
WRLRHVVL	8	Unmodified	_WRLRHVVL_					0	0	0			REV__nc|ENSG00000072210|P51648-2|ALDH3A2	REV__nc|ENSG00000072210|P51648-2|ALDH3A2	MULTI-SECPEP	OvCa9_classI_Rep2	2	538.8634033203125	2	539.83526	1077.65597	-0.49215	-0.00026568	1.6098	0.00086903	1.1176	0.00060335	539.8344165656886	133.78	0.83795	133.55	133.07	133.9	-0.22696					43	16	4	0	0	0	0.028476	1	13265	13265		33.516	0	1	31075	+		63942	28731	52746	52796	70281	70281					0.12024560661848227
WRLRVVAR	8	Unmodified	_WRLRVVAR_					0	0	0		ENST00000263708.6_1_2:120517626-120517854:+|nuORF	ENST00000263708.6_1_2:120517626-120517854:+|nuORF	ENST00000263708.6_1_2:120517626-120517854:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	528.3328247070312	2	528.332885	1054.65122	3.0268	0.0015991	-4.3599	-0.0023035	-1.3331	-0.00070434	528.330384856165	25.512	0.98969	22.802	22.428	23.418	-2.7097					46	22	4	0	0	0	0.75661	1	288	288		19.36	1.0356	1	151950			63943	9915	52747	52797	70282	70282					0.12607676519064626
WRNVLCMYN	9	Unmodified	_WRNVLCMYN_					0	0	0		ENST00000513546.3_1_4:89199269-89199383:-|nuORF	ENST00000513546.3_1_4:89199269-89199383:-|nuORF	ENST00000513546.3_1_4:89199269-89199383:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	599.7777709960938	2	599.778436	1197.54232	1.4272	0.00085599	-0.51751	-0.00031039	0.90967	0.0005456	599.7781750789687	144.39	0.82831	144.39	144.11	144.94	0					32	16	4	0	0	0	0.56889	1	16883	16883		35.618	6.4482	1	185110			63944	13015	52748	52798	70283	70283					-0.04855038557707303
WRQRIRKWRQM	11	Unmodified	_WRQRIRKWRQM_					0	0	0			REV__ENSG00000267796|ENST00000301159|LIN37	REV__ENSG00000267796|ENST00000301159|LIN37	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.7962646484375	3	548.644044	1642.9103	-0.65991	-0.00036206	-0.38163	-0.00020938	-1.0415	-0.00057144	548.6440954224059	35.206	0.33199	35.206	35.052	35.384	0					10	6	2	0	0	0	0.02656	1	1746	1746		1.3219	0.98142	1	36198	+		63945	23593	52749	52799	70284	70284					0.11456259418673653
WRQTKMTL	8	Unmodified	_WRQTKMTL_					0	0	0		ENST00000467549.5_1_3:78987852-78987978:-|nuORF	ENST00000467549.5_1_3:78987852-78987978:-|nuORF	ENST00000467549.5_1_3:78987852-78987978:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	531.6168212890625	2	532.289494	1062.56443	-0.2623	-0.00013962	1.4305	0.00076144	1.1682	0.00062182	532.2903403532295	84.17	1.3292	81.507	81.314	82.643	-2.6629					47	27	2	0	0	0	0.028476	1	7172	7172		23.042	0	1	159920			63946	12314	52750	52800	70285	70285					0.03565509182340065
WRRFKVQREKR	11	Unmodified	_WRRFKVQREKR_					0	0	0			REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	REV__nc|ENSG00000048707|Q5THJ4-2|VPS13D	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.8131103515625	3	530.314692	1587.92225	2.2623	0.0011997	2.2985	0.0012189	4.5608	0.0024187	530.3158469525338	99.683	0.57826	99.683	99.318	99.896	0					25	13	3	0	0	0	0.026324	1	10981	10981		11.932	2.7206	1	866440	+		63947	16672	52751	52801	70286	70286					0.1518019943350737
WRRIPPALP	9	Unmodified	_WRRIPPALP_					0	0	0			REV__nc|ENSG00000070759|Q96S53-3|TESK2	REV__nc|ENSG00000070759|Q96S53-3|TESK2	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.3321533203125	2	553.335093	1104.65563	-3.6376	-0.0020128	-1.4952	-0.00082735	-5.1328	-0.0028402	553.3340858441829	153.01	1.0617	151.57	151.24	152.3	-1.435					63	25	4	0	0	0	0.65476	1	15156	15156		25.45	4.5032	1	106460	+		63948	16889	52752	52802	70287	70287					0.10749140941970836
WRRLRRLNVDK	11	Unmodified	_WRRLRRLNVDK_					0	0	0			REV__SLC9A8|p.S492Rfs*44|1|0.46|ENSG00000197818|chr20:49884051-49884051|C/-|frameshift_variant	REV__SLC9A8|p.S492Rfs*44|1|0.46|ENSG00000197818|chr20:49884051-49884051|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.6386413574219	3	504.639176	1510.8957	-0.20509	-0.00010349	0.49458	0.00024959	0.2895	0.00014609	504.63938555541824	123.09	0.9908	121.72	121.46	122.45	-1.3666					44	19	4	0	0	0	0.72548	1	11643	11643		9.2118	0.41249	1	93765	+		63949	29373	52753	52803	70288	70288					0.1606851054220897
WRRLRRLNVDK	11	Unmodified	_WRRLRRLNVDK_					0	0	0			REV__SLC9A8|p.S492Rfs*44|1|0.46|ENSG00000197818|chr20:49884051-49884051|C/-|frameshift_variant	REV__SLC9A8|p.S492Rfs*44|1|0.46|ENSG00000197818|chr20:49884051-49884051|C/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		3	504.639176	1510.8957	-0.87385	-0.00044098	1.1319	0.00057121	0.25806	0.00013023	504.974056040745	122.11	0.93914	121.89	121.62	122.56	-0.21803	0.079488	0.0013729	NaN	9.2118	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	76259	+		63950	29373	52753	52803							0.1606851054220897
WRRLRRLNVDK	11	Unmodified	_WRRLRRLNVDK_					0	0	0			REV__SLC9A8|p.S492Rfs*44|1|0.46|ENSG00000197818|chr20:49884051-49884051|C/-|frameshift_variant	REV__SLC9A8|p.S492Rfs*44|1|0.46|ENSG00000197818|chr20:49884051-49884051|C/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		3	504.639176	1510.8957	0.90309	0.00045574	-0.71858	-0.00036262	0.18452	9.3114E-05	504.6388509952348	122.85	0.78741	121.82	121.53	122.32	-1.0286	0.0098834	-0.0014286	NaN	9.2118	37	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	105410	+		63951	29373	52753	52803							0.1606851054220897
WRRLRRLNVDK	11	Unmodified	_WRRLRRLNVDK_					0	0	0			REV__SLC9A8|p.S492Rfs*44|1|0.46|ENSG00000197818|chr20:49884051-49884051|C/-|frameshift_variant	REV__SLC9A8|p.S492Rfs*44|1|0.46|ENSG00000197818|chr20:49884051-49884051|C/-|frameshift_variant	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		3	504.639176	1510.8957	-0.20509	-0.00010349	0.49458	0.00024959	0.2895	0.00014609	504.63938555541824	123.09	0.9908	121.72	121.46	122.45	-1.3666	-0.089371	0.00040801	NaN	9.2118	44	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	93765	+		63952	29373	52753	52803							0.1606851054220897
WRRVQFFRFRR	11	Unmodified	_WRRVQFFRFRR_					0	0	0			REV__chr6:31945037-31945178|97|24.64|0.48|5.69|+|1|None,C2|1	REV__chr6:31945037-31945178|97|24.64|0.48|5.69|+|1|None,C2|1	MULTI-SECPEP	OvCa9_classI_Rep2	2	414.8983459472656	4	414.239193	1652.92767	0.25554	0.00010586	-3.4031	-0.0014097	-3.1475	-0.0013038	414.23786826568346	39.791	1.4867	37.081	36.459	37.946	-2.7097					66	29	3	0	0	0	0.02656	1	2038	2038		1.3219	1.3219	1	21861	+		63953	16074	52754	52804	70289	70289					0.12731923015985558
WRRVQFFRFRR	11	Unmodified	_WRRVQFFRFRR_					0	0	0			REV__chr6:31945037-31945178|97|24.64|0.48|5.69|+|1|None,C2|1	REV__chr6:31945037-31945178|97|24.64|0.48|5.69|+|1|None,C2|1	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.9805297851562	3	551.983165	1652.92767	-0.59601	-0.00032899	-3.346	-0.001847	-3.942	-0.0021759	551.9813504414648	40.156	2.3724	37.202	36.665	39.038	-2.9541					136	45	4	0	0	0	0.72582	1	1714	1714		0	0	1	382700	+		63954	16074	52754	52804	70290	70290					0.12731923015985558
WRRWFLRMRRW	11	Unmodified	_WRRWFLRMRRW_					0	0	0		chr19:14537143-14562525|88|78.34|0.84|6.55|+|1|None,TECR|1	chr19:14537143-14562525|88|78.34|0.84|6.55|+|1|None,TECR|1	chr19:14537143-14562525|88|78.34|0.84|6.55|+|1|None,TECR|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.3023681640625	3	583.656284	1747.94702	-0.14736	-8.601E-05	-0.1795	-0.00010476	-0.32686	-0.00019077	583.656112206835	46.47	0.26155	46.47	46.326	46.587	0					9	5	2	0	0	0	0.026551	1	3295	3295		3.4087	3.0373	1	88033			63955	404	52755	52805	70291	70291					0.10296556035245885
WRRWFLRMRRW	11	Unmodified	_WRRWFLRMRRW_					0	0	0		chr19:14537143-14562525|88|78.34|0.84|6.55|+|1|None,TECR|1	chr19:14537143-14562525|88|78.34|0.84|6.55|+|1|None,TECR|1	chr19:14537143-14562525|88|78.34|0.84|6.55|+|1|None,TECR|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.7491455078125	3	583.656284	1747.94702	-0.30586	-0.00017852	4.0511	0.0023645	3.7452	0.0021859	583.6586932006451	30.853	0.29731	30.853	30.682	30.979	0					13	5	4	0	0	0	0.026553	1	1211	1211		3.2113	0	1	101160			63956	404	52755	52805	70292	70292					0.10296556035245885
WRRWRRRPGKM	11	Unmodified	_WRRWRRRPGKM_					0	0	0		ENST00000514589.5_1_4:76439408-76439555:-|nuORF	ENST00000514589.5_1_4:76439408-76439555:-|nuORF	ENST00000514589.5_1_4:76439408-76439555:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.8154296875	3	528.96875	1583.88442	-0.51014	-0.00026985	1.9234	0.0010174	1.4132	0.00074755	529.3028714038818	51.726	0.28413	51.726	51.504	51.788	0					9	6	2	0	0	0	0.02653	1	3982	3982		6.3209	0.31984	1	146170			63957	13032	52756	52806	70293	70293					0.11583409967056468
WRSRMRRQFFR	11	Unmodified	_WRSRMRRQFFR_					0	0	0		ENST00000382214.7_1_20:388725-389346:+|nuORF	ENST00000382214.7_1_20:388725-389346:+|nuORF	ENST00000382214.7_1_20:388725-389346:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.335205078125	3	542.628394	1624.86335	0.043855	2.3797E-05	1.4164	0.00076855	1.4602	0.00079235	542.9640557372567	31.882	0.34791	31.882	31.658	32.006	0					10	6	2	0	0	0	0.026461	1	1326	1326		5.4129	2.5611	1	23491			63958	11178	52757	52807	70294	70294					0.07591399867555992
WRVIKYQWRP	10	Unmodified	_WRVIKYQWRP_					0	0	0		ENST00000523916.5_1_4:185550589-185552262:-|nuORF	ENST00000523916.5_1_4:185550589-185552262:-|nuORF	ENST00000523916.5_1_4:185550589-185552262:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	477.9406433105469	3	477.938451	1430.79352	-0.40385	-0.00019301	3.9275	0.0018771	3.5236	0.0016841	477.94034511259724	45.725	1.1969	43.015	42.747	43.943	-2.7097					72	23	4	0	0	0	0.7855	1	2700	2700		20.837	2.3061	1	323790			63959	13158	52758	52808	70295	70295					0.09535844470588017
WRVWQWDEKWT	11	Unmodified	_WRVWQWDEKWT_					0	0	0		ENSG00000109111|ENST00000314616|SUPT6H;nc|ENSG00000109111|Q7KZ85-3|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	ENSG00000109111|ENST00000314616|SUPT6H	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.832763671875	3	540.596642	1618.7681	2.064	0.0011158	0.35308	0.00019087	2.4171	0.0013067	540.9301638122625	124.45	0.25698	123.42	123.24	123.49	-1.0377					5	4	2	0	0	0	0.026383	1	9634	9634		12.957	6.9564	1	9214.4			63960	2700	52759	52809	70296	70296					-0.016536748425096448
WRWAWLPRRK	10	Unmodified	_WRWAWLPRRK_					0	0	0			REV__chr12:6770218-6770471|118|386.26|0.21|10.82|+|1|PTMS,None|2	REV__chr12:6770218-6770471|118|386.26|0.21|10.82|+|1|PTMS,None|2	MULTI-SECPEP	OvCa9_classI_Rep3	3	486.26483154296875	3	485.61419	1453.82074	1.1377	0.00055246	-3.2191	-0.0015633	-2.0815	-0.0010108	485.61255647675694	62.552	0.14961	59.518	59.411	59.561	-3.0339					4	2	2	0	0	0	0.027492	1	2268	2268		11.636	0	1	5325.3	+		63961	15888	52760	52810	70297	70297					0.11198372801595724
WRWGTIVRKQL	11	Unmodified	_WRWGTIVRKQL_					0	0	0			REV__ENST00000463449.1_1_3:156389795-156390147:-|nuORF	REV__ENST00000463449.1_1_3:156389795-156390147:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	481.62017822265625	3	481.617489	1441.83064	1.3928	0.00067077	2.331	0.0011226	3.7237	0.0017934	481.6185706788555	28.734	0.83069	26.024	25.806	26.636	-2.7097					43	17	4	0	0	0	0.72511	1	648	648		14.086	0	1	87409	+		63962	26130	52761	52811	70298	70298					0.12739516016381458
WRWMRRAARWL	11	Unmodified	_WRWMRRAARWL_					0	0	0		ENST00000404924.5_1_2:24150417-24181201:+|nuORF	ENST00000404924.5_1_2:24150417-24181201:+|nuORF	ENST00000404924.5_1_2:24150417-24181201:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	530.3060913085938	3	529.957851	1586.85172	-1.0479	-0.00055533	1.5354	0.00081368	0.48749	0.00025835	530.2932402444098	58.927	0.20264	56.146	55.986	56.189	-2.7801					5	3	2	0	0	0	0.026383	1	4277	4277		17.833	11.832	1	8008.3			63963	11457	52762	52812	70299	70299					0.08177202844240128
WRWRWRRWRRS	11	Unmodified	_WRWRWRRWRRS_					0	0	0		ENST00000253814.5_1_5:141488387-141511833:+|nuORF	ENST00000253814.5_1_5:141488387-141511833:+|nuORF	ENST00000253814.5_1_5:141488387-141511833:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	447.73785400390625	4	447.498904	1785.96651	-0.41737	-0.00018677	0.84725	0.00037915	0.42989	0.00019237	447.49900264223646	65.811	0.35756	65.811	65.546	65.904	0					11	8	2	0	0	0	0.026549	1	6031	6031		3.6191	3.6191	1	133380			63964	9806	52763	52813	70300	70300					0.10496648370349249
WRWWQRLLPWR	11	Unmodified	_WRWWQRLLPWR_					0	0	0		ENSG00000176410|ENST00000395176|DNAJC30	ENSG00000176410|ENST00000395176|DNAJC30	ENSG00000176410|ENST00000395176|DNAJC30	MULTI-SECPEP	OvCa99_classI_Rep5	1	421.7171630859375	4	421.484931	1681.91062	0.3451	0.00014546	-3.6955	-0.0015576	-3.3504	-0.0014122	421.7339445118389	32.08	0.49611	32.08	31.857	32.353	0					20	9	3	0	0	0	0.026551	1	1400	1400		3.4087	1.99	1	31831			63965	7606	52764	52814	70301	70301					0.09694002410196845
WSAETFATLE	10	Unmodified	_WSAETFATLE_					0	0	0			REV__tr|A0A553SUQ4|A0A553SUQ4_NIACIThiolreductantABCexportersubunitCydDOS=NialliacirculansOX=1397GN=cydDPE=4SV=1	REV__tr|A0A553SUQ4|A0A553SUQ4_NIACIThiolreductantABCexportersubunitCydDOS=NialliacirculansOX=1397GN=cydDPE=4SV=1	MSMS	OvCa99_classI_Rep5	1	577.7738647460938	2	577.771854	1153.52915	NaN	NaN	NaN	NaN	NaN	NaN	NaN	139.18	1	139.18	138.68	139.68	0								0	0	0	0.14803	1	16247	16247		49.442	8.6634	1		+		63966	31108	52765	52815	70302	70302					-0.04146874864477468
WSALLKRL	8	Unmodified	_WSALLKRL_					0	0	0			REV__nc|ENSG00000140326|Q8IWY9-1|CDAN1	REV__nc|ENSG00000140326|Q8IWY9-1|CDAN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2911071777344	2	493.810919	985.607286	-1.5473	-0.00076406	-3.4003	-0.0016791	-4.9476	-0.0024432	493.8091551358087	64.032	0.77425	64.032	63.814	64.588	0					43	18	3	0	0	0	0.028476	1	5812	5812		47.916	15.961	1	5162500	+		63967	19663	52766	52816	70303	70303					0.11390647302073376
WSAPVCTHLL	10	Unmodified	_WSAPVCTHLL_					0	0	0			REV__nc|ENSG00000011422|Q03405-2|PLAUR	REV__nc|ENSG00000011422|Q03405-2|PLAUR	MULTI-MSMS	OvCa99_classI_Rep5	1	563.7896118164062	2	563.789327	1125.5641	1.9236	0.0010845	-4.0465	-0.0022814	-2.1229	-0.0011969	563.7873399363306	149.02	0.68213	149.02	148.72	149.4	0					26	13	3	0	0	0	0.6104	1	17437	17437		40.778	7.2626	1	83067	+		63968	16490	52767	52817	70304	70304					0.006340894624827342
WSASGISLDL	10	Unmodified	_WSASGISLDL_					0	0	0		nc|ENSG00000159082|O43426-4|SYNJ1;ENSG00000159082|ENST00000674351|SYNJ1;nc|ENSG00000159082|O43426|SYNJ1;nc|ENSG00000159082|O43426-5|SYNJ1	nc|ENSG00000159082|O43426-4|SYNJ1	nc|ENSG00000159082|O43426-4|SYNJ1	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.7689208984375	2	524.769114	1047.52368	1.2056	0.00063268	-1.6004	-0.00083984	-0.39475	-0.00020715	524.7680823154832	138.36	1.2572	136.83	136.07	137.33	-1.5284					38	28	2	0	0	0	0.73378	1	13442	13442		26.693	4.1133	1	15361			63969	5985	52768	52818	70305	70305					0.001814463437312952
WSASLGLLL	9	Unmodified	_WSASLGLLL_					0	0	0			REV__ENSG00000188352|ENST00000338382|FOCAD	REV__ENSG00000188352|ENST00000338382|FOCAD	MULTI-SECPEP	OvCa9_classI_Rep4_	4	480.2539367675781	2	480.28166	958.548768	-0.38308	-0.00018399	-4.0077	-0.0019248	-4.3908	-0.0021088	480.2794771535203	79.675	0.33368	76.923	76.797	77.13	-2.7514					13	6	3	0	0	0	0.027462	1	6488	6488		42.474	0	1	298720	+		63970	22709	52769	52819	70306	70306					0.0678354593695758
WSAVFYII	8	Unmodified	_WSAVFYII_					0	0	0			REV__tr|A0A7D6ZWH4|A0A7D6ZWH4_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17800PE=4SV=1	REV__tr|A0A7D6ZWH4|A0A7D6ZWH4_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17800PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	499.79296875	2	499.770929	997.527304	-0.18924	-9.4576E-05	-2.8106	-0.0014047	-2.9999	-0.0014993	499.7694352474021	107.61	1.4179	107.3	106.97	108.39	-0.30836					42	28	2	0	0	0	0.028476	1	10121	10121		37.028	3.5355	1	68064	+		63971	32288	52770	52820	70307	70307					0.028441609082278774
WSCPGPGPTV	10	Unmodified	_WSCPGPGPTV_					0	0	0		nc|ENSG00000128596|Q96JN2-3|CCDC136	nc|ENSG00000128596|Q96JN2-3|CCDC136	nc|ENSG00000128596|Q96JN2-3|CCDC136	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.73388671875	2	500.731477	999.448402	-2.3356	-0.0011695	2.6764	0.0013402	0.3408	0.00017065	500.7326225182415	87.757	1.4132	85.13	84.698	86.111	-2.6269					66	27	3	0	0	0	0.48198	1	7474	7474		56.721	1.2168	1	389570			63972	15006	52771	52821	70308	70308					-0.051344343883556576
WSDAILAGLI	10	Unmodified	_WSDAILAGLI_					0	0	0			REV__ENSG00000088386|ENST00000376503|SLC15A1	REV__ENSG00000088386|ENST00000376503|SLC15A1	MULTI-MSMS	OvCa9_classI_Rep4_	4	529.796142578125	2	529.797675	1057.5808	-1.3653	-0.00072335	-0.082708	-4.3819E-05	-1.448	-0.00076717	529.7979689161442	99.318	1.8457	96.993	96.126	97.971	-2.3253					101	35	4	0	0	0	0.3976	1	8838	8838		68.787	4.5796	1	456980	+		63973	17177	52772	52822	70309	70309					0.054309136201027286
WSDAPLIGVG	10	Unmodified	_WSDAPLIGVG_					0	0	0			REV__ENST00000281017.7_2_2:669283-669583:-|nuORF	REV__ENST00000281017.7_2_2:669283-669583:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.7655944824219	2	507.766374	1013.5182	3.7041	0.0018808	-3.6419	-0.0018492	0.06224	3.1603E-05	507.76435878537296	132.17	1.6916	130.67	129.94	131.63	-1.5015					93	33	4	0	0	0	0.62668	1	12757	12757		38.806	1.647	1	152800	+		63974	24114	52773	52823	70310	70310					0.011977675519119657
WSEESSGRAY	10	Unmodified	_WSEESSGRAY_					0	0	0		ENST00000458005.2_1_17:9738090-9769219:+|nuORF;ENSG00000065325|ENST00000262441|GLP2R	ENST00000458005.2_1_17:9738090-9769219:+|nuORF	ENST00000458005.2_1_17:9738090-9769219:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	585.3652954101562	2	586.25436	1170.49417	-0.60926	-0.00035718	-2.4004	-0.0014073	-3.0097	-0.0017645	586.252775025856	29.376	0.44994	29.376	29.186	29.636	0					13	8	2	0	0	0	0.027284	1	1045	1045		20.947	0	1	81494			63975	1322	52774	52824	70311	70311					-0.08426117672411237
WSGENVIIP	9	Unmodified	_WSGENVIIP_					0	0	0		chr3:141738509-141745159|138|10.33|0.48|4.43|+|0|RNF7,RNF7|1;nc|ENSG00000114125|Q9UBF6-3|RNF7	chr3:141738509-141745159|138|10.33|0.48|4.43|+|0|RNF7,RNF7|1	chr3:141738509-141745159|138|10.33|0.48|4.43|+|0|RNF7,RNF7|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.7539367675781	2	507.766374	1013.5182	1.5067	0.00076503	-0.40113	-0.00020368	1.1055	0.00056135	507.76658911039823	101.3	0.71021	101.3	100.94	101.65	0					40	16	4	0	0	0	0.027462	1	11208	11208		40.573	23.208	1	1014900			63976	475	52775	52825	70312	70312					0.01197767551900597
WSGGSLFN	8	Unmodified	_WSGGSLFN_					0	0	0			REV__ENST00000226091.2_1_17:7613862-7613994:+|nuORF	REV__ENST00000226091.2_1_17:7613862-7613994:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	434.20306396484375	2	434.20341	866.392267	1.2083	0.00052466	-1.4598	-0.00063384	-0.25144	-0.00010918	434.2025958640944	128.74	0.88927	127.64	127.37	128.26	-1.0933					42	17	3	0	0	0	0.74679	1	10171	10171		28.254	1.4582	1	151830	+		63977	23768	52776	52826	70313	70313					-0.04627319233520666
WSGLYVPLL	9	Unmodified	_WSGLYVPLL_					0	0	0			REV__nc|ENSG00000083223|Q5VYS8-6|TUT7	REV__nc|ENSG00000083223|Q5VYS8-6|TUT7	MULTI-MSMS	OvCa99_classI_Rep5	1	524.2979125976562	2	524.29731	1046.58007	0.32037	0.00016797	2.3354	0.0012244	2.6557	0.0013924	524.2978910059531	101.88	0.98295	101.88	101.61	102.59	0					52	22	3	0	0	0	0.25214	1	11334	11334		68.485	9.7027	1	1384200	+		63978	17098	52777	52827	70314	70314					0.05864118971044263
WSLAALLMVF	10	Unmodified	_WSLAALLMVF_					0	0	0			REV__ENST00000446331.6_1_8:11660331-11696115:+|nuORF	REV__ENST00000446331.6_1_8:11660331-11696115:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.8197021484375	2	575.820095	1149.62564	-0.88975	-0.00051234	-3.0698	-0.0017677	-3.9596	-0.00228	575.8182150623272	93.926	1.9141	91.419	91.059	92.973	-2.5072					94	39	4	0	0	0	0.56767	1	8249	8249		45.952	6.6991	1	736500	+		63979	17044	52778	52828	70315	70315					0.05681021161763056
WSLEEKEEE	9	Unmodified	_WSLEEKEEE_					0	0	0		tr|A0A553SPR7|A0A553SPR7_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26935PE=4SV=1	tr|A0A553SPR7|A0A553SPR7_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26935PE=4SV=1	tr|A0A553SPR7|A0A553SPR7_NIACISensorhistidinekinaseOS=NialliacirculansOX=1397GN=CEQ21_26935PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	589.7652587890625	2	589.764226	1177.5139	1.5293	0.0009019	1.0084	0.00059472	2.5377	0.0014966	589.764571626881	148.2	2.4049	148.2	147.74	150.14	0					109	48	3	0	0	0	0.42676	1	17329	17329		49.442	1.5259	1	147290			63980	34074	52779	52829	70316	70316					-0.06775786452340071
WSLLILGCRI	10	Carbamidomethyl (C)	_WSLLILGC(Carbamidomethyl (C))RI_	WSLLILGC(1)RI		WSLLILGC(57)RI		0	1	0			REV__tr|A0A553SN61|A0A553SN61_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23750PE=4SV=1	REV__tr|A0A553SN61|A0A553SN61_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_23750PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	615.8524169921875	2	615.855001	1229.69545	1.4912	0.00091838	-3.7058	-0.0022823	-2.2146	-0.0013639	615.8529652321471	130.34	0.57242	130.34	130.15	130.72	0					21	11	2	0	0	0	0.48198	1	15139	15139		56.721	9.0637	1	226380	+		63981	30396	52780	52830	70317	70317	366				0.08978899830390219
WSLVRPCS	8	Unmodified	_WSLVRPCS_					0	0	0			REV__ENST00000470140.5_1_10:103345697-103345793:-|nuORF	REV__ENST00000470140.5_1_10:103345697-103345793:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	473.7790222167969	2	474.242012	946.469472	-0.99853	-0.00047355	-1.4432	-0.00068443	-2.4417	-0.001158	474.2436145988697	34.537	0.281	34.537	34.351	34.632	0					8	5	2	0	0	0	0.028476	1	1675	1675		35.618	11.416	1	13804	+		63982	26256	52781	52831	70318	70318					-0.005904242888504996
WSLWRRVFL	9	Unmodified	_WSLWRRVFL_					0	0	0		ENSG00000213822|ENST00000396477|CEACAM18;CEACAM18|p.N95Kfs*14|1|0.74|ENSG00000213822|chr19:51480564-51480565|AC/-|frameshift_variant	ENSG00000213822|ENST00000396477|CEACAM18	ENSG00000213822|ENST00000396477|CEACAM18	MULTI-MSMS	OvCa99_classI_Rep5	1	421.5767517089844	3	421.576742	1261.7084	-0.40895	-0.0001724	-3.0273	-0.0012763	-3.4363	-0.0014487	421.5752958168101	59.614	1.3895	59.614	59.34	60.73	0					69	34	4	0	0	0	0.53957	1	5142	5142		30.318	0	1	3313300			63983	9150	52782	52832	70319	70319					0.08801099004790558
WSMYNQLF	8	Unmodified	_WSMYNQLF_					0	0	0			REV__tr|A0A7D7A0V1|A0A7D7A0V1_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11625PE=4SV=1	REV__tr|A0A7D7A0V1|A0A7D7A0V1_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11625PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.7936401367188	2	544.747127	1087.4797	2.0291	0.0011053	2.8109	0.0015312	4.84	0.0026366	544.7485562546169	100.28	0.83061	100.28	99.939	100.77	0					35	18	3	0	0	0	0.028476	1	11183	11183		83.287	0	1	1085500	+		63984	32459	52783	52833	70320	70320					-0.06053861354280343
WSPRRSWCCPL	11	Unmodified	_WSPRRSWCCPL_					0	0	0		ENST00000383693.7_1_3:100120115-100120196:+|nuORF	ENST00000383693.7_1_3:100120115-100120196:+|nuORF	ENST00000383693.7_1_3:100120115-100120196:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	464.22271728515625	3	464.221753	1389.64343	-0.11482	-5.3302E-05	4.2587	0.001977	4.1439	0.0019237	464.22361173150654	22.757	0.46768	22.757	22.574	23.042	0					25	10	4	0	0	0	0.72477	1	246	246		18.531	1.8137	1	114090			63985	11186	52784	52834	70321	70321					-0.035805868550141895
WSQESGGD	8	Unmodified	_WSQESGGD_					0	0	0		ENST00000380495.8_1_16:30042343-30042436:-|nuORF	ENST00000380495.8_1_16:30042343-30042436:-|nuORF	ENST00000380495.8_1_16:30042343-30042436:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1719970703125	2	433.169764	864.324976	2.6506	0.0011482	1.0551	0.00045706	3.7058	0.0016052	433.17066138824987	56.19	10.226	53.039	47.859	58.085	-3.1504					464	337	3	0	0	0	0.74229	1	1431	1431		30.504	0	1	60065			63986	11147	52785	52835	70322	70322					-0.11261394235123134
WSRRFFFLRDR	11	Unmodified	_WSRRFFFLRDR_					0	0	0		ENST00000592982.2_1_19:33794203-33794776:+|nuORF	ENST00000592982.2_1_19:33794203-33794776:+|nuORF	ENST00000592982.2_1_19:33794203-33794776:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	529.288818359375	3	529.288143	1584.8426	-1.6961	-0.00089773	4.0086	0.0021217	2.3125	0.001224	529.2902323239629	50.249	1.1398	47.455	47.182	48.322	-2.794					55	22	4	0	0	0	0.72573	1	3233	3233		6.001	0	1	233910			63987	14148	52787	52836	70323	70323					0.07357132759534579
WSSASAGH	8	Unmodified	_WSSASAGH_					0	0	0		ENST00000398988.7_2_17:25951918-25952683:+|nuORF	ENST00000398988.7_2_17:25951918-25952683:+|nuORF	ENST00000398988.7_2_17:25951918-25952683:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.5491943359375	2	401.677559	801.340566	1.6165	0.00064932	-2.7578	-0.0011077	-1.1413	-0.00045843	401.6762817139259	46.314	0.60826	46.314	45.979	46.587	0					29	13	3	0	0	0	0.028476	1	3293	3293		14.664	0.88877	1	410590			63988	11377	52788	52837	70324	70324					-0.06805062927423933
WSTILFNVL	9	Unmodified	_WSTILFNVL_					0	0	0		nc|ENSG00000114841|Q9P2D7-8|DNAH1;ENSG00000114841|ENST00000420323|DNAH1;DNAH1|p.E2311Rfs*58|1|0.32|ENSG00000114841|chr3:52372997-52372998|-/A|frameshift_variant;nc|ENSG00000114841|Q9P2D7-6|DNAH1;ENST00000486752.5_1_3:52350520-52422757:+|nuORF;DNAH1|p.Q1748Tfs*9|1|0.17|ENSG00000114841|chr3:52363140-52363141|-/AA|frameshift_variant	nc|ENSG00000114841|Q9P2D7-8|DNAH1	nc|ENSG00000114841|Q9P2D7-8|DNAH1	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.7835693359375	2	546.808042	1091.60153	-0.58989	-0.00032256	-2.6405	-0.0014439	-3.2304	-0.0017664	546.8060300588996	67.878	0.78513	67.878	67.448	68.233	0					34	19	2	0	0	0	0.027462	1	6323	6323		29.15	0	1	351930			63989	3045	52789	52838	70325	70325					0.0593950399975256
WSVDPLDRAM	10	Unmodified	_WSVDPLDRAM_					0	0	0		nc|ENSG00000148180|P06396|GSN;ENST00000373806.1_2_9:124089055-124094878:+|nuORF;ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN	nc|ENSG00000148180|P06396|GSN	nc|ENSG00000148180|P06396|GSN	MULTI-MSMS	OvCa99_classI_Rep5	1	595.2892456054688	2	595.287148	1188.55974	1.3755	0.00081879	0.69763	0.00041529	2.0731	0.0012341	595.287412425493	109.75	0.8075	109.75	109.46	110.27	0					43	17	3	0	0	0	0.35539	2	12430	12430;12455		74.165	22.972	1	3525100		+	63990	15081	52790	52839	70326;70327	70326					-0.026994197510930462
WSVDPLDRAM	10	Unmodified	_WSVDPLDRAM_					0	0	0		nc|ENSG00000148180|P06396|GSN;ENST00000373806.1_2_9:124089055-124094878:+|nuORF;ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN	nc|ENSG00000148180|P06396|GSN	nc|ENSG00000148180|P06396|GSN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	595.287148	1188.55974	-0.38065	-0.00022659	0.27457	0.00016345	-0.10608	-6.3146E-05	595.286965622365	109.97	0.59394	109.79	109.51	110.11	-0.17236	0.096909	0.00061303	NaN	74.165	26	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27108		+	63991	15081	52790	52839							-0.026994197510930462
WSVDPLDRAM	10	Unmodified	_WSVDPLDRAM_					0	0	0		nc|ENSG00000148180|P06396|GSN;ENST00000373806.1_2_9:124089055-124094878:+|nuORF;ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN	nc|ENSG00000148180|P06396|GSN	nc|ENSG00000148180|P06396|GSN	MULTI-MATCH	OvCa9_classI_Rep3	3		2	595.287148	1188.55974	1.2255	0.0007295	-1.797	-0.0010697	-0.57152	-0.00034022	595.2857037130701	110.71	0.86291	109.56	109.35	110.21	-1.1444	-0.13124	-0.0018533	NaN	74.165	37	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35994		+	63992	15081	52790	52839							-0.026994197510930462
WSVDPLDRAM	10	Unmodified	_WSVDPLDRAM_					0	0	0		nc|ENSG00000148180|P06396|GSN;ENST00000373806.1_2_9:124089055-124094878:+|nuORF;ENSG00000148180|ENST00000432226|GSN;nc|ENSG00000148180|P06396-4|GSN;nc|ENSG00000148180|P06396-3|GSN	nc|ENSG00000148180|P06396|GSN	nc|ENSG00000148180|P06396|GSN	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	595.287148	1188.55974	0.99608	0.00059296	-1.6528	-0.00098391	-0.65675	-0.00039096	595.2859315384529	111.24	1.0523	109.68	109.1	110.16	-1.5655	-0.018745	-0.0016817	NaN	74.165	38	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37129		+	63993	15081	52790	52839							-0.026994197510930462
WSVGETIAL	9	Unmodified	_WSVGETIAL_					0	0	0		ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	ENSG00000166557|ENST00000299705|TMED3	MULTI-MSMS	OvCa99_classI_Rep5	1	488.2570495605469	2	488.260925	974.507297	-0.77023	-0.00037607	-3.7522	-0.0018321	-4.5225	-0.0022081	488.2588916129011	53.327	0.73435	53.327	52.999	53.733	0					47	16	4	0	0	0	0.29717	1	4237	4237		63.306	2.3343	1	3059600			63994	6692	52791	52840	70328	70328					0.01902365177613774
WSVNTTTHL	9	Unmodified	_WSVNTTTHL_					0	0	0			REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	MULTI-MSMS	OvCa99_classI_Rep5	1	529.7686157226562	2	529.766906	1057.51926	2.4267	0.0012856	-0.51403	-0.00027231	1.9127	0.0010133	529.7668488371553	96.49	1.0101	96.49	96.082	97.093	0					52	23	4	0	0	0	0.48047	1	10578	10578		44.377	0	1	2485000	+		63995	18807	52792	52841	70329	70329					-0.00720018079186957
WSVNTTTHL	9	Unmodified	_WSVNTTTHL_					0	0	0			REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	REV__nc|ENSG00000127124|Q5T1R4-2|HIVEP3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	529.796142578125	2	529.766906	1057.51926	-1.2727	-0.00067423	0.21102	0.00011179	-1.0617	-0.00056244	529.7672816112996	99.092	0.98442	96.767	96.382	97.366	-2.3253					52	18	5	0	0	0	0.027453	1	8838	8838		54.776	24.273	1	117560	+		63996	18807	52792	52841	70330	70330					-0.00720018079186957
WSWRMRKRRRR	11	Unmodified	_WSWRMRKRRRR_					0	0	0		ENST00000487093.5_1_3:51575631-51661706:+|nuORF	ENST00000487093.5_1_3:51575631-51661706:+|nuORF	ENST00000487093.5_1_3:51575631-51661706:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	420.2403869628906	4	419.24311	1672.94333	-0.13492	-5.6565E-05	-0.78467	-0.00032897	-0.91959	-0.00038553	419.2429313284862	58.184	0.90161	55.392	55.122	56.024	-2.792					25	17	3	0	0	0	0.026549	1	4243	4243		1.523	1.1516	1	25488			63997	12635	52793	52842	70331	70331					0.1337788626137808
WSYESQARW	9	Unmodified	_WSYESQARW_					0	0	0			REV__ENSG00000241106|ENST00000438763|HLA-DOB	REV__ENSG00000241106|ENST00000438763|HLA-DOB	MULTI-MSMS	OvCa99_classI_Rep5	1	606.7760620117188	2	606.775262	1211.53597	0.85223	0.00051711	0.74852	0.00045418	1.6008	0.0009713	606.7754588297506	159.93	1.8224	159.93	159.24	161.06	0					77	36	3	0	0	0	0.44568	1	18744	18744		47.657	7.5992	1	717280	+		63998	23445	52794	52843	70332	70332					-0.06133517193256921
WTAAMAKKAL	10	Unmodified	_WTAAMAKKAL_					0	0	0		ENST00000580842.1_1_17:43663677-43664292:+|nuORF	ENST00000580842.1_1_17:43663677-43664292:+|nuORF	ENST00000580842.1_1_17:43663677-43664292:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.8118286132812	2	545.807519	1089.60049	2.3747	0.0012961	3.4935	0.0019068	5.8681	0.0032029	545.8093094575927	135.38	1.037	133.83	133.56	134.6	-1.5437					47	20	3	0	0	0	0.58067	1	13124	13124		44.377	3.599	1	130950			63999	13990	52795	52844	70333	70333					0.059269663591976496
WTALLFIYLHH	11	Unmodified	_WTALLFIYLHH_					0	0	0		nc|ENSG00000106648|Q7Z4T8-2|GALNTL5;ENSG00000106648|ENST00000392800|GALNTL5	nc|ENSG00000106648|Q7Z4T8-2|GALNTL5	nc|ENSG00000106648|Q7Z4T8-2|GALNTL5	MULTI-SECPEP	OvCa99_classI_Rep5	1	471.3089294433594	3	471.92744	1412.76049	-0.39616	-0.00018696	-3.1406	-0.0014821	-3.5368	-0.0016691	471.92594320051444	24.637	0.85633	24.637	24.486	25.342	0					26	16	2	0	0	0	0.026221	1	502	502		25.126	9.2053	1	19897			64000	2568	52796	52845	70334	70334					0.07062217627890277
WTDSLEQL	8	Unmodified	_WTDSLEQL_					0	0	0			REV__nc|ENSG00000142459|Q96CN4|EVI5L	REV__nc|ENSG00000142459|Q96CN4|EVI5L	MULTI-MSMS	OvCa99_classI_Rep5	1	496.2431640625	2	496.24019	990.465826	-0.13177	-6.5389E-05	3.8906	0.0019307	3.7588	0.0018653	496.2419258467062	105.2	0.87643	105.2	104.87	105.75	0					47	19	4	0	0	0	0.58851	1	11824	11824		66.429	2.8954	1	2446100	+		64001	19785	52797	52846	70335	70335					-0.029788155817072948
WTEQEVKELL	10	Unmodified	_WTEQEVKELL_					0	0	0			REV__DOCK3|p.K1465Pfs*18|1|0.29|ENSG00000088538|chr3:51356230-51356231|-/TCCCCTCACCTTTCACACACAGCTTCCTTGGGGACCA|frameshift_variant	REV__DOCK3|p.K1465Pfs*18|1|0.29|ENSG00000088538|chr3:51356230-51356231|-/TCCCCTCACCTTTCACACACAGCTTCCTTGGGGACCA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	637.8364868164062	2	637.834985	1273.65542	0.50997	0.00032528	-0.049847	-3.1794E-05	0.46013	0.00029348	637.8347414740941	142.3	0.5274	140.83	140.55	141.08	-1.4627					25	9	3	0	0	0	0.64697	1	13916	13916		36.447	0.82846	1	75593	+		64002	16329	52798	52847	70336	70336					0.029536316408439234
WTGDDGSQ	8	Unmodified	_WTGDDGSQ_					0	0	0		ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B;nc|ENSG00000204084|P32019-3|INPP5B	ENSG00000204084|ENST00000373024|INPP5B	ENSG00000204084|ENST00000373024|INPP5B	MULTI-MSMS	OvCa9_classI_Rep3	3	433.1716003417969	2	433.169764	864.324976	1.9505	0.00084491	3.0435	0.0013184	4.9941	0.0021633	433.17100760562903	63.152	4.2639	60.118	58.202	62.466	-3.0339					141	92	2	0	0	0	0.74971	1	2124	2124		26.796	0.10319	1	38128			64003	8946	52799	52848	70337	70337					-0.11261394235123134
WTIRQIIQKIQ	11	Unmodified	_WTIRQIIQKIQ_					0	0	0			REV__nc|ENSG00000133059|Q6XUX3-2|DSTYK	REV__nc|ENSG00000133059|Q6XUX3-2|DSTYK	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.2881164550781	3	476.289149	1425.84562	0.32315	0.00015391	-3.5329	-0.0016827	-3.2098	-0.0015288	476.2874255337455	22.278	1.0813	20.939	20.675	21.757	-1.3386					78	26	4	0	0	0	0.70315	1	278	278		28.577	0.93281	1	162610	+		64004	19123	52800	52849	70338	70338					0.1497296309369176
WTKEHVKKWVN	11	Unmodified	_WTKEHVKKWVN_					0	0	0		ENSG00000177409|ENST00000318238|SAMD9L;nc|ENSG00000177409|Q8IVG5-2|SAMD9L;SAMD9L|p.V553Gfs*10|1|0.41|ENSG00000177409|chr7:93134314-93134315|-/C|frameshift_variant	ENSG00000177409|ENST00000318238|SAMD9L	ENSG00000177409|ENST00000318238|SAMD9L	MULTI-SECPEP	OvCa9_classI_Rep2	2	485.7873229980469	3	485.601616	1453.78302	0.45481	0.00022086	0.26308	0.00012775	0.71789	0.00034861	485.6015707174712	86.8	0.76534	85.368	85.175	85.94	-1.4311					29	14	3	0	0	0	0.026174	1	7588	7588		22.562	4.7284	1	49973			64005	7677	52801	52850	70339	70339					0.07427817025495642
WTKGKIKSA	9	Unmodified	_WTKGKIKSA_					0	0	0		ENST00000487643.1_1_3:183240843-183262455:-|nuORF	ENST00000487643.1_1_3:183240843-183262455:-|nuORF	ENST00000487643.1_1_3:183240843-183262455:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	509.80291748046875	2	509.805834	1017.59712	-0.41042	-0.00020923	-3.6368	-0.0018541	-4.0473	-0.0020633	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.68424	1	13611	13611		21.96	0.25755	1	150140			64006	12652	52802	52851	70340	70340					0.08902039576844345
WTLIGPLLPQT	11	Unmodified	_WTLIGPLLPQT_					0	0	0		ENST00000546676.1_1_12:50529254-50529473:-|nuORF	ENST00000546676.1_1_12:50529254-50529473:-|nuORF	ENST00000546676.1_1_12:50529254-50529473:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	619.4005126953125	2	619.860806	1237.70706	1.3041	0.00080839	-1.3705	-0.00084953	-0.066367	-4.1138E-05	620.3624114706678	85.642	0.29113	82.995	82.8	83.091	-2.6463					6	5	2	0	0	0	0.026125	1	7197	7197		28.081	1.0342	1	18456			64007	13538	52803	52852	70341	70341					0.0977142012538934
WTLVEVPAR	9	Unmodified	_WTLVEVPAR_					0	0	0		ENSG00000135973|ENST00000258456|GPR45	ENSG00000135973|ENST00000258456|GPR45	ENSG00000135973|ENST00000258456|GPR45	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.8060913085938	2	535.803291	1069.59203	-0.8536	-0.00045736	-3.4082	-0.0018261	-4.2618	-0.0022835	535.8011621437106	26.817	0.351	26.817	26.692	27.043	0					14	6	3	0	0	0	0.027462	1	727	727		19.997	0	1	140970			64008	4442	52804	52853	70342	70342					0.06001735714221468
WTMLLQDAFP	10	Unmodified	_WTMLLQDAFP_					0	0	0		ENST00000369889.5_1_10:104536125-104536170:+|nuORF	ENST00000369889.5_1_10:104536125-104536170:+|nuORF	ENST00000369889.5_1_10:104536125-104536170:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	611.8319091796875	2	611.302267	1220.58998	3.4462	0.0021067	-1.5543	-0.00095015	1.8919	0.0011565	611.3018433029097	88.539	0.33345	88.539	88.384	88.717	0					13	7	2	0	0	0	0.026685	1	9416	9416		45.972	16.421	1	313230			64009	10907	52805	52854	70343	70343					-0.01149061085880021
WTNGFRKFFS	10	Unmodified	_WTNGFRKFFS_					0	0	0			REV__ENST00000375807.7_1_9:91974106-91974298:+|nuORF	REV__ENST00000375807.7_1_9:91974106-91974298:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	645.3253784179688	2	645.324922	1288.63529	-1.4341	-0.00092546	3.5509	0.0022915	2.1168	0.001366	645.327117611008	98.778	3.0684	97.885	96.974	100.04	-0.89305					168	61	4	0	0	0	0.67931	1	8953	8953		32.812	0	1	979390	+		64010	25089	52806	52855	70344	70344					0.0025192549148869148
WTWRRRSSRPL	11	Unmodified	_WTWRRRSSRPL_					0	0	0			REV__ENST00000545947.5_1_3:49507611-49508472:+|nuORF	REV__ENST00000545947.5_1_3:49507611-49508472:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.7817077636719	3	500.948009	1499.8222	-0.91221	-0.00045697	-1.477	-0.00073992	-2.3893	-0.0011969	500.94785674616827	69.268	0.58974	65.787	65.516	66.105	-3.4812					23	11	3	0	0	0	0.02625	1	5155	5155		13.508	5.1007	1	62769	+		64011	27414	52807	52856	70345	70345					0.09227962099726028
WTWRRRSSRPL	11	Unmodified	_WTWRRRSSRPL_					0	0	0			REV__ENST00000545947.5_1_3:49507611-49508472:+|nuORF	REV__ENST00000545947.5_1_3:49507611-49508472:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		3	500.948009	1499.8222	0.42261	0.0002117	-1.7775	-0.00089045	-1.3549	-0.00067874	500.9470933021122	68.5	0.85007	65.686	65.411	66.261	-2.8143	-0.050397	-2.4012E-05	NaN	13.508	38	16	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	92789	+		64012	27414	52807	52856							0.09227962099726028
WTYMWFVQFCP	11	Unmodified	_WTYMWFVQFCP_					0	0	0			REV__L1MB2_dup734|chr2:41391481-41393110:-|2.5038669870492565|0.0056028466714037|8.8|420.0|109|3|anti-sense	REV__L1MB2_dup734|chr2:41391481-41393110:-|2.5038669870492565|0.0056028466714037|8.8|420.0|109|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	502.2699890136719	3	503.22276	1506.64645	-0.68988	-0.00034717	1.5299	0.00076986	0.83997	0.00042269	503.22373890750424	69.691	0.57646	69.691	69.307	69.883	0					23	13	3	0	0	0	0.026221	1	6653	6653		14.086	0	1	484730	+		64013	28406	52808	52857	70346	70346					-0.08660756520862378
WVAVILVSV	9	Unmodified	_WVAVILVSV_					0	0	0		tr|A0A553SPK2|A0A553SPK2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_26460PE=3SV=1	tr|A0A553SPK2|A0A553SPK2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_26460PE=3SV=1	tr|A0A553SPK2|A0A553SPK2_NIACIAminoacidABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_26460PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	493.3045654296875	2	493.307678	984.600803	-0.53214	-0.00026251	-3.952	-0.0019495	-4.4841	-0.0022121	493.3056649294853	115.19	1.6282	114.14	113.7	115.33	-1.055					74	32	4	0	0	0	0.30002	1	8552	8552		62.978	4.7485	1	209660			64014	34054	52809	52858	70347	70347					0.10788709350720183
WVDHLRSRV	9	Unmodified	_WVDHLRSRV_					0	0	0		AluSq2_dup18060|chr5:139544290-139544589:-|1.3614962498174907|0.0990166627229545|3.78|410.0|1|1|sense	AluSq2_dup18060|chr5:139544290-139544589:-|1.3614962498174907|0.0990166627229545|3.78|410.0|1|1|sense	AluSq2_dup18060|chr5:139544290-139544589:-|1.3614962498174907|0.0990166627229545|3.78|410.0|1|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.8225708007812	2	584.322714	1166.63087	-0.6509	-0.00038033	3.7941	0.002217	3.1432	0.0018367	584.325034219627	24.126	0.30171	24.126	23.886	24.188	0					10	5	3	0	0	0	0.027462	1	406	406		16.473	0	1	69862			64015	75	52810	52859	70348	70348					0.054224610686105734
WVEVGVLVI	9	Unmodified	_WVEVGVLVI_					0	0	0			REV__ENSG00000148848|ENST00000448723|ADAM12	REV__ENSG00000148848|ENST00000448723|ADAM12	MULTI-MSMS	OvCa9_classI_Rep4_	4	507.3036193847656	2	507.305136	1012.59572	-0.0021193	-1.0752E-06	-3.3289	-0.0016888	-3.331	-0.0016898	507.3032500698358	115.55	1.6495	114.15	113.41	115.06	-1.3977					79	32	3	0	0	0	0.50066	1	10704	10704		42.474	3.2216	1	276450	+		64016	20134	52811	52860	70349	70349					0.08992405488095301
WVFIGAKDL	9	Unmodified	_WVFIGAKDL_					0	0	0		ENSG00000198643|ENST00000358781|FAM3D	ENSG00000198643|ENST00000358781|FAM3D	ENSG00000198643|ENST00000358781|FAM3D	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.7891845703125	2	524.794935	1047.57532	1.5884	0.00083359	-2.166	-0.0011367	-0.57763	-0.00030313	524.7937468068106	83.772	1.3372	83.772	83.335	84.672	0					62	31	4	0	0	0	0.027447	1	8803	8803		66.429	16.405	1	1140100			64017	8840	52812	52861	70350	70350					0.05343234828274035
WVFLVLGF	8	Unmodified	_WVFLVLGF_					0	0	0		ENSG00000131507|ENST00000253814|NDFIP1	ENSG00000131507|ENST00000253814|NDFIP1	ENSG00000131507|ENST00000253814|NDFIP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	491.7650451660156	2	490.783839	979.553125	1.0565	0.00051851	-2.5524	-0.0012527	-1.4959	-0.00073418	490.78223504643523	101.35	0.54327	101.35	101.15	101.69	0					21	12	3	0	0	0	0.028476	1	11309	11309		33.493	10.45	1	660680			64018	4074	52813	52862	70351	70351					0.06253055150511955
WVFVQAIAHG	10	Unmodified	_WVFVQAIAHG_					0	0	0		nc|ENSG00000130270|O60423-3|ATP8B3;ENSG00000130270|ENST00000310127|ATP8B3;nc|ENSG00000130270|O60423-1|ATP8B3	nc|ENSG00000130270|O60423-3|ATP8B3	nc|ENSG00000130270|O60423-3|ATP8B3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.7731323242188	2	564.303458	1126.59236	0.43615	0.00024612	3.2584	0.0018387	3.6946	0.0020849	564.307049382928	71.142	1.0676	67.686	67.155	68.222	-3.4563					28	21	2	0	0	0	0.027084	1	5355	5355		24.203	3.2558	1	57489			64019	15011	52814	52863	70352	70352					0.03413155434077453
WVFVTLRV	8	Unmodified	_WVFVTLRV_					0	0	0		nc|ENSG00000157766|P16112-3|ACAN;nc|ENSG00000157766|P16112-2|ACAN;nc|ENSG00000157766|P16112|ACAN;ENSG00000157766|ENST00000560601|ACAN	nc|ENSG00000157766|P16112-3|ACAN	nc|ENSG00000157766|P16112-3|ACAN	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.7413635253906	2	510.30547	1018.59639	0.19798	0.00010103	-4.1089	-0.0020968	-3.911	-0.0019958	510.3023728998374	58.219	0.6713	58.219	57.859	58.53	0					28	15	3	0	0	0	0.028476	1	4960	4960		38.806	0	1	428860			64020	5910	52815	52864	70353	70353					0.08783244927803935
WVFVTLRV	8	Unmodified	_WVFVTLRV_					0	0	0		nc|ENSG00000157766|P16112-3|ACAN;nc|ENSG00000157766|P16112-2|ACAN;nc|ENSG00000157766|P16112|ACAN;ENSG00000157766|ENST00000560601|ACAN	nc|ENSG00000157766|P16112-3|ACAN	nc|ENSG00000157766|P16112-3|ACAN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	510.30547	1018.59639	-1.1545	-0.00058915	-7.6538	-0.0039058	-8.8083	-0.0044949	510.3019204791796	60.962	1.6651	58.192	57.659	59.324	-2.7702	-0.018536	-0.0023729	NaN	38.806	71	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80591			64021	5910	52815	52864							0.08783244927803935
WVFVTLRV	8	Unmodified	_WVFVTLRV_					0	0	0		nc|ENSG00000157766|P16112-3|ACAN;nc|ENSG00000157766|P16112-2|ACAN;nc|ENSG00000157766|P16112|ACAN;ENSG00000157766|ENST00000560601|ACAN	nc|ENSG00000157766|P16112-3|ACAN	nc|ENSG00000157766|P16112-3|ACAN	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	510.30547	1018.59639	-0.082019	-4.1855E-05	-5.2524	-0.0026803	-5.3344	-0.0027222	510.3026285417038	61.678	0.85336	58.22	58.01	58.864	-3.4577	0.0097794	7.7954E-05	NaN	38.806	30	17	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	354520			64022	5910	52815	52864							0.08783244927803935
WVGLALITF	9	Unmodified	_WVGLALITF_					0	0	0			REV__nc|ENSG00000177674|Q6RW13-2|AGTRAP	REV__nc|ENSG00000177674|Q6RW13-2|AGTRAP	MULTI-MSMS	OvCa9_classI_Rep3	3	510.29815673828125	2	510.299853	1018.58515	-1.0251	-0.00052312	-3.0745	-0.0015689	-4.0996	-0.002092	510.2975497187805	101.07	1.0466	99.467	99.294	100.34	-1.6053					32	19	4	0	0	0	0.37146	1	6894	6894		54.765	0	1	538610	+		64023	22020	52816	52865	70354	70354					0.07660422833646408
WVGLALITF	9	Unmodified	_WVGLALITF_					0	0	0			REV__nc|ENSG00000177674|Q6RW13-2|AGTRAP	REV__nc|ENSG00000177674|Q6RW13-2|AGTRAP	MULTI-MSMS	OvCa9_classI_Rep4_	4	510.2988586425781	2	510.299853	1018.58515	-0.54448	-0.00027785	-3.5105	-0.0017914	-4.055	-0.0020693	510.29735156137053	101.7	1.1457	99.43	99.304	100.45	-2.2665					32	21	3	0	0	0	0.37146	1	9141	9141		54.765	0	1	518170	+		64024	22020	52816	52865	70355	70355					0.07660422833646408
WVGQRTLKN	9	Unmodified	_WVGQRTLKN_					0	0	0			REV__tr|A0A7D6ZFC9|A0A7D6ZFC9_9CLOTTyrosine-typerecombinase/integraseOS=ClostridiumintestinaleOX=36845GN=HZF06_14405PE=3SV=1	REV__tr|A0A7D6ZFC9|A0A7D6ZFC9_9CLOTTyrosine-typerecombinase/integraseOS=ClostridiumintestinaleOX=36845GN=HZF06_14405PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.3102416992188	2	551.311815	1100.60908	-0.37818	-0.00020849	-1.6559	-0.0009129	-2.0341	-0.0011214	551.3108232441903	143.73	1.3553	142.28	141.89	143.25	-1.4427					66	25	4	0	0	0	0.62352	1	14111	14111		29.15	2.4566	1	191320	+		64025	31966	52817	52866	70356	70356					0.06279656320043614
WVHDGLRFGS	10	Unmodified	_WVHDGLRFGS_					0	0	0			REV__nc|ENSG00000169994|Q6PIF6|MYO7B	REV__nc|ENSG00000169994|Q6PIF6|MYO7B	MULTI-MSMS	OvCa9_classI_Rep2	2	587.2940063476562	2	587.293622	1172.57269	-1.7713	-0.0010403	4.1701	0.0024491	2.3988	0.0014088	587.2959419520926	118.58	1.9781	118.43	118.08	120.06	-0.14754					123	39	5	0	0	0	0.6349	1	11437	11437		37.812	2.6108	1	499840	+		64026	21507	52818	52867	70357	70357					-0.006692205766739789
WVIHSSLLGR	10	Unmodified	_WVIHSSLLGR_					0	0	0			REV__ENST00000354989.9_1_20:25206534-25206930:+|nuORF	REV__ENST00000354989.9_1_20:25206534-25206930:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.3328247070312	2	584.33529	1166.65603	-0.83616	-0.0004886	-2.5741	-0.0015041	-3.4102	-0.0019927	584.3338231558395	21.184	1.6832	19.846	19.548	21.231	-1.3386					110	33	5	0	0	0	0.67931	1	119	119		32.812	0.061884	1	1661100	+		64027	24743	52819	52868	70358	70358					0.07936515871210759
WVISCVVL	8	Carbamidomethyl (C)	_WVISC(Carbamidomethyl (C))VVL_	WVISC(1)VVL		WVISC(63)VVL		0	1	0		ENSG00000152078|ENST00000370203|TLCD4	ENSG00000152078|ENST00000370203|TLCD4	ENSG00000152078|ENST00000370203|TLCD4	MULTI-MSMS	OvCa9_classI_Rep4_	4	488.2701721191406	2	488.270238	974.525924	-0.66992	-0.0003271	-3.0204	-0.0014748	-3.6904	-0.0018019	488.26881844340147	71.073	1.7956	67.617	67.251	69.047	-3.4563					76	36	3	0	0	0	0.60486	1	5435	5435		62.978	10.042	1	1035500			64028	5602	52820	52869	70359	70359	54				0.03764203547825673
WVKFNKLLF	9	Unmodified	_WVKFNKLLF_					0	0	0			REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|420|3|anti-sense	REV__L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|420|3|anti-sense	MSMS	OvCa9_classI_Rep4_	4	597.855712890625	2	597.855327	1193.6961	NaN	NaN	NaN	NaN	NaN	NaN	NaN	151.43	1	150	149.5	150.5	-1.4344								0	0	0	0.21446	1	14967	14967		24.203	1.1603	1		+		64029	28504	52821	52870	70360	70360					0.10700062541741318
WVKLLCDD	8	Unmodified	_WVKLLCDD_					0	0	0			REV__nc|ENSG00000104093|Q8TDJ6-2|DMXL2;REV__nc|ENSG00000172869|Q9Y485|DMXL1	REV__nc|ENSG00000172869|Q9Y485|DMXL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	496.2719421386719	2	496.249503	990.484453	-0.8769	-0.00043516	-2.0706	-0.0010275	-2.9475	-0.0014627	496.2482543505891	73.487	0.72247	70.091	69.881	70.604	-3.3961					20	14	2	0	0	0	0.028476	1	5710	5710		44.117	6.3053	1	17092	+		64030	21731;16309	52822	52871	70361	70361					-0.011169772115181331
WVKVELAI	8	Unmodified	_WVKVELAI_					0	0	0		PTPRT|p.A149V|1|0.2|ENSG00000196090|chr20:42791235-42791235|G/A|missense_variant	PTPRT|p.A149V|1|0.2|ENSG00000196090|chr20:42791235-42791235|G/A|missense_variant	PTPRT|p.A149V|1|0.2|ENSG00000196090|chr20:42791235-42791235|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	479.2900085449219	2	479.292028	956.569503	-0.33467	-0.0001604	-3.3434	-0.0016025	-3.6781	-0.0017629	479.29029988395797	117.55	0.94048	116.51	116.24	117.18	-1.0324					43	18	3	0	0	0	0.50674	1	8845	8845		76.847	2.5916	1	249320			64031	15530	52823	52872	70362	70362					0.0894813631659872
WVLAIFWI	8	Unmodified	_WVLAIFWI_					0	0	0		ENST00000505555.5_1_5:218470-251793:+|nuORF	ENST00000505555.5_1_5:218470-251793:+|nuORF	ENST00000505555.5_1_5:218470-251793:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	524.2925415039062	2	524.304939	1046.59532	-0.26249	-0.00013763	2.9756	0.0015601	2.7131	0.0014225	524.3063603799357	21.278	0.197	21.278	21.163	21.36	0					8	5	2	0	0	0	0.7543	1	105	105		24.504	2.5441	1	16622			64032	12896	52824	52873	70363	70363					0.07389030558874765
WVLFGFIEH	9	Unmodified	_WVLFGFIEH_					0	0	0			REV__ENST00000568189.5_1_2:111003217-111043255:+|nuORF	REV__ENST00000568189.5_1_2:111003217-111043255:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	574.3037719726562	2	574.300384	1146.58622	-0.32228	-0.00018508	1.1911	0.00068407	0.86887	0.00049899	574.3012965384783	30.687	0.83693	27.977	27.804	28.641	-2.7097					34	16	3	0	0	0	0.6926	1	907	907		20.482	3.1169	1	116960	+		64033	27712	52825	52874	70364	70364					0.018786372025488163
WVLFVLATL	9	Unmodified	_WVLFVLATL_					0	0	0		nc|ENSG00000168398|P30411-2|BDKRB2;ENSG00000168398|ENST00000554311|BDKRB2	nc|ENSG00000168398|P30411-2|BDKRB2	nc|ENSG00000168398|P30411-2|BDKRB2	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.3175659179688	2	531.323328	1060.6321	-3.6615	-0.0019454	-4.3431	-0.0023076	-8.0045	-0.004253	531.3209981458791	150.21	1.2922	148.78	148.42	149.72	-1.4344					53	28	3	0	0	0	0.69895	1	14872	14872		18.324	0.95945	1	89595			64034	6903	52826	52875	70365	70365					0.10421282384800179
WVLTQAPLLML	11	Unmodified	_WVLTQAPLLML_					0	0	0		nc|nan|Q9UFG5-2|C19orf25	nc|nan|Q9UFG5-2|C19orf25	nc|nan|Q9UFG5-2|C19orf25	MULTI-MSMS	OvCa99_classI_Rep5	1	428.9186096191406	3	428.917665	1283.73117	-0.4943	-0.00021202	0.0026493	1.1363E-06	-0.49166	-0.00021088	428.9176590101011	51.975	1.0763	51.975	51.708	52.784	0					66	24	5	0	0	0	0.62561	1	4070	4070		42.338	0.095499	1	4229500			64035	15420	52827	52876	70366	70366					0.10064937287370412
WVLWLAVI	8	Unmodified	_WVLWLAVI_					0	0	0		tr|A0A553SIF3|A0A553SIF3_NIACICardiolipinsynthaseN-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14725PE=4SV=1	tr|A0A553SIF3|A0A553SIF3_NIACICardiolipinsynthaseN-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14725PE=4SV=1	tr|A0A553SIF3|A0A553SIF3_NIACICardiolipinsynthaseN-terminaldomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_14725PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	500.3055725097656	2	500.304939	998.595324	-0.54138	-0.00027086	-0.85512	-0.00042782	-1.3965	-0.00069868	500.30443519252344	98.755	1.9878	96.399	95.698	97.686	-2.3557					81	38	4	0	0	0	0.64315	1	8789	8789		54.895	0.11826	1	402920			64036	33377	52828	52877	70367	70367					0.09597030558904862
WVRDGLTVT	9	Unmodified	_WVRDGLTVT_					0	0	0		tr|A0A553SSC1|A0A553SSC1_NIACIUreacarboxylaseOS=NialliacirculansOX=1397GN=ucaPE=4SV=1	tr|A0A553SSC1|A0A553SSC1_NIACIUreacarboxylaseOS=NialliacirculansOX=1397GN=ucaPE=4SV=1	tr|A0A553SSC1|A0A553SSC1_NIACIUreacarboxylaseOS=NialliacirculansOX=1397GN=ucaPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	522.8247680664062	2	523.785099	1045.55564	-0.82762	-0.00043349	1.7111	0.00089626	0.88351	0.00046277	523.7856333400449	81.562	0.70142	79.239	78.957	79.658	-2.3226					17	13	2	0	0	0	0.02741	1	4538	4538		71.296	0	1	70872			64037	34358	52829	52878	70368	70368					0.03468858817518594
WVRPQWRRWWT	11	Unmodified	_WVRPQWRRWWT_					0	0	0			REV__ENSG00000131398|ENST00000477616|KCNC3	REV__ENSG00000131398|ENST00000477616|KCNC3	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.8333740234375	3	552.960138	1655.85858	1.3702	0.00075768	2.807	0.0015522	4.1772	0.0023098	552.9614941007936	80.884	0.6329	80.884	80.615	81.248	0					40	14	5	0	0	0	0.02656	1	8342	8342		1.4188	1.4188	1	1642800	+		64038	19012	52830	52879	70369	70369					0.05688838996434242
WVRPQWRRWWT	11	Unmodified	_WVRPQWRRWWT_					0	0	0			REV__ENSG00000131398|ENST00000477616|KCNC3	REV__ENSG00000131398|ENST00000477616|KCNC3	MULTI-MSMS	OvCa9_classI_Rep2	2	552.9608764648438	3	552.960138	1655.85858	1.1848	0.00065516	0.0012373	6.8419E-07	1.1861	0.00065584	552.9600595878891	82.158	1.1347	80.51	80.231	81.365	-1.6485					80	21	5	0	0	0	0.72582	1	6996	6996		1.523	0	1	672110	+		64039	19012	52830	52879	70370	70370					0.05688838996434242
WVRPQWRRWWT	11	Unmodified	_WVRPQWRRWWT_					0	0	0			REV__ENSG00000131398|ENST00000477616|KCNC3	REV__ENSG00000131398|ENST00000477616|KCNC3	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.9617309570312	3	552.960138	1655.85858	-0.17941	-9.9207E-05	1.359	0.00075147	1.1796	0.00065227	552.9608274090268	83.09	1.2186	80.407	80.124	81.343	-2.683					77	24	4	0	0	0	0.72582	1	6899	6899		0.37141	0	1	665350	+		64040	19012	52830	52879	70371	70371					0.05688838996434242
WVRPQWRRWWT	11	Unmodified	_WVRPQWRRWWT_					0	0	0			REV__ENSG00000131398|ENST00000477616|KCNC3	REV__ENSG00000131398|ENST00000477616|KCNC3	MULTI-MATCH	OvCa9_classI_Rep3	3		3	552.960138	1655.85858	-1.4349	-0.00079344	2.6542	0.0014677	1.2193	0.00067424	552.9615535670234	83.055	1.1892	80.759	80.431	81.62	-2.2963	0.11865	0.0018581	NaN	1.4188	81	24	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	869730	+		64041	19012	52830	52879							0.05688838996434242
WVTLELCMH	9	Carbamidomethyl (C)	_WVTLELC(Carbamidomethyl (C))MH_	WVTLELC(1)MH		WVTLELC(46)MH		0	1	0			REV__ENSG00000102362|ENST00000372989|SYTL4	REV__ENSG00000102362|ENST00000372989|SYTL4	MULTI-MSMS	OvCa99_classI_Rep5	1	594.7802124023438	2	594.780644	1187.54674	1.6252	0.00096663	-0.34461	-0.00020497	1.2806	0.00076166	594.7801952912697	148.99	1.0753	148.99	148.67	149.75	0					46	21	3	0	0	0	0.46377	1	17427	17427		45.952	8.1404	1	284210	+		64042	17551	52831	52880	70372	70372	193				-0.039535741348345255
WVTSPDVPV	9	Unmodified	_WVTSPDVPV_					0	0	0			REV__TIGD4|p.M191Tfs*26|1|0.14|ENSG00000169989|chr4:152770433-152770434|-/AGGTG|frameshift_variant	REV__TIGD4|p.M191Tfs*26|1|0.14|ENSG00000169989|chr4:152770433-152770434|-/AGGTG|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	500.2628479003906	2	500.260925	998.507297	1.3743	0.00068751	0.40391	0.00020206	1.7782	0.00088957	500.2609959121263	147.53	1.7605	147.53	147.21	148.97	0					83	35	4	0	0	0	0.52083	1	17341	17341		40.573	1.3198	1	1454700	+		64043	21505	52832	52881	70373	70373					0.007983651776157785
WVWRWTYC	8	Unmodified	_WVWRWTYC_					0	0	0			REV__ENST00000419548.4_1_20:3670209-3670299:-|nuORF	REV__ENST00000419548.4_1_20:3670209-3670299:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	600.2704467773438	2	600.276386	1198.53822	-5.4284	-0.0032585	-1.7944	-0.0010771	-7.2228	-0.0043357	600.275203760979	160.29	1.5488	160.06	159.78	161.33	-0.22697					74	31	3	0	0	0	0.74816	1	16292	16292		15.636	0.77134	1	65724	+		64044	25584	52833	52882	70374	70374					-0.05310759989106373
WWFAKLLKRWL	11	Unmodified	_WWFAKLLKRWL_					0	0	0			REV__ENSG00000103335|ENST00000301015|PIEZO1	REV__ENSG00000103335|ENST00000301015|PIEZO1	MULTI-SECPEP	OvCa99_classI_Rep5	1	516.2952270507812	3	516.306363	1545.89726	-1.1925	-0.00061568	2.1539	0.001112	0.96138	0.00049637	516.6415128425939	27.244	0.24834	27.244	27.092	27.341	0					10	4	3	0	0	0	0.026534	1	770	770		6.001	0.30226	1	22652	+		64045	17612	52834	52883	70375	70375					0.1461475157825589
WWFFHRHFHIP	11	Unmodified	_WWFFHRHFHIP_					0	0	0		ENST00000296257.9_1_3:185344110-185347744:+|nuORF	ENST00000296257.9_1_3:185344110-185347744:+|nuORF	ENST00000296257.9_1_3:185344110-185347744:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3087158203125	3	537.270312	1608.78911	-0.55214	-0.00029665	4.1673	0.002239	3.6151	0.0019423	537.6073603894673	33.8	0.19221	33.8	33.681	33.873	0					5	3	2	0	0	0	0.026478	1	1571	1571		6.6596	0	1	18813			64046	10131	52835	52884	70376	70376					0.009063800476951656
WWFRWRLDRYV	11	Unmodified	_WWFRWRLDRYV_					0	0	0		ENSG00000127995|ENST00000297273|CASD1	ENSG00000127995|ENST00000297273|CASD1	ENSG00000127995|ENST00000297273|CASD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.3275146484375	3	561.628276	1681.863	3.0594	0.0017182	-2.1076	-0.0011837	0.9518	0.00053456	561.627095049437	87.815	0.66912	87.815	87.586	88.255	0					51	15	5	0	0	0	0.026549	1	9286	9286		3.6191	3.6191	1	4786700			64047	3860	52836	52885	70377	70377					0.04934303419349817
WWLLLLCL	8	Unmodified	_WWLLLLCL_					0	0	0			REV__ENSG00000121716|ENST00000609309|PILRB	REV__ENSG00000121716|ENST00000609309|PILRB	MULTI-MSMS	OvCa9_classI_Rep3	3	530.308349609375	2	530.306624	1058.59869	-0.14461	-7.6688E-05	2.0464	0.0010852	1.9018	0.0010086	530.3076035340549	118.34	1.4886	117.31	117.03	118.52	-1.0324					73	29	4	0	0	0	0.58426	1	8954	8954		67.327	12.433	1	450800	+		64048	18552	52837	52886	70378	70378					0.0717395734125148
WWLWWLWIVGR	11	Unmodified	_WWLWWLWIVGR_					0	0	0		ENST00000361229.8_1_X:101976007-102003782:+|nuORF;ENST00000448867.1_1_X:102001081-102003782:+|nuORF	ENST00000361229.8_1_X:101976007-102003782:+|nuORF	ENST00000361229.8_1_X:101976007-102003782:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	534.90771484375	3	534.290713	1599.85031	-1.0282	-0.00054936	-0.96104	-0.00051348	-1.9892	-0.0010628	534.6246940537806	22.12	1.0391	20.782	20.473	21.512	-1.3386					44	21	4	0	0	0	0.02653	1	274	274		6.3209	4.7979	1	55753			64049	10788	52838	52887	70379	70379					0.074378920270874
WWRLSLQRWLL	11	Unmodified	_WWRLSLQRWLL_					0	0	0		HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|155|2|anti-sense	HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|155|2|anti-sense	HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|155|2|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.2867431640625	3	519.633139	1555.87759	-1.2701	-0.00065999	4.3841	0.0022781	3.114	0.0016182	519.6347004838964	92.812	0.15085	90.305	90.212	90.362	-2.5072					4	2	2	0	0	0	0.026145	1	8062	8062		17.833	10.492	1	6312			64050	14464	52839	52888	70380	70380					0.12188375567507137
WWRWNRWPGVL	11	Unmodified	_WWRWNRWPGVL_					0	0	0		ENST00000510393.5_1_1:16083148-16084686:+|nuORF	ENST00000510393.5_1_1:16083148-16084686:+|nuORF	ENST00000510393.5_1_1:16083148-16084686:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	519.2858276367188	3	519.273834	1554.79967	1.2744	0.00066174	-4.33	-0.0022484	-3.0556	-0.0015867	519.2717767589156	91.588	0.318	90.352	90.114	90.432	-1.2355					6	5	2	0	0	0	0.025612	1	8122	8122		43.651	7.1229	1	13151			64051	12971	52840	52889	70381	70381					0.04446362702105944
WWRWRWRWRPS	11	Unmodified	_WWRWRWRWRPS_					0	0	0		chr16:31184396-31188325|141|15.18|0.05|8.15|+|1|FUS,FUS|1	chr16:31184396-31188325|141|15.18|0.05|8.15|+|1|FUS,FUS|1	chr16:31184396-31188325|141|15.18|0.05|8.15|+|1|FUS,FUS|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.3643188476562	3	586.639398	1756.89637	1.2349	0.00072441	4.464	0.0026187	5.6988	0.0033431	586.9760489198493	109.85	0.4065	109.85	109.68	110.09	0					10	8	2	0	0	0	0.026551	1	12476	12476		0.3405	0	1	102320			64052	377	52841	52890	70382	70382					0.048193499819035424
WWRYWWHYPIC	11	Unmodified	_WWRYWWHYPIC_					0	0	0		ENST00000410111.7_1_2:86406577-86422494:-|nuORF	ENST00000410111.7_1_2:86406577-86422494:-|nuORF	ENST00000410111.7_1_2:86406577-86422494:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	566.3609619140625	3	565.927446	1694.76051	0.055451	3.1381E-05	3.1117	0.001761	3.1671	0.0017924	565.929016023578	100.94	0.54163	98.676	98.342	98.883	-2.2665					15	10	2	0	0	0	0.026549	1	9005	9005		1.523	0.10423	1	100660			64053	11542	52842	52891	70383	70383					-0.05908105643743511
WWWFLHKFRIY	11	Unmodified	_WWWFLHKFRIY_					0	0	0		nc|ENSG00000166262|Q96M60-2|FAM227B	nc|ENSG00000166262|Q96M60-2|FAM227B	nc|ENSG00000166262|Q96M60-2|FAM227B	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.8076782226562	3	561.297868	1680.87177	2.6562	0.0014909	-3.037	-0.0017047	-0.38085	-0.00021377	561.2955967764043	100.12	0.20927	100.12	99.984	100.19	0					5	4	2	0	0	0	0.026534	1	11087	11087		6.001	4.4781	1	131910			64054	15154	52843	52892	70384	70384					0.05857277055815757
WWWRWLRRRR	10	Unmodified	_WWWRWLRRRR_					0	0	0			REV__chr12:54283228-54283827|429|62.96|0.0|22.59|+|1|HNRNPA1,HNRNPA1|2	REV__chr12:54283228-54283827|429|62.96|0.0|22.59|+|1|HNRNPA1,HNRNPA1|2	MULTI-SECPEP	OvCa9_classI_Rep3	3	552.291748046875	3	552.979755	1655.91744	-1.1299	-0.00062482	3.1747	0.0017556	2.0448	0.0011307	553.31588894928	95.612	0.74728	93.783	93.328	94.075	-1.8286					20	14	2	0	0	0	0.027588	1	6218	6218		0.5277	0.5277	1	48551	+		64055	15883	52844	52893	70385	70385					0.11571360081393323
WWWWWFSFYSL	11	Unmodified	_WWWWWFSFYSL_					0	0	0			REV__ENST00000300134.7_1_12:57504946-57505147:-|nuORF	REV__ENST00000300134.7_1_12:57504946-57505147:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.3539428710938	3	565.259079	1692.75541	1.5702	0.00088755	2.058	0.0011633	3.6282	0.0020509	565.2617923403169	144.31	0.14693	144.31	144.21	144.35	0					4	2	2	0	0	0	0.026562	1	16867	16867		0.37141	0	1	10518	+		64056	24231	52845	52894	70386	70386					-0.0632608623473061
WYDRRLHYRRR	11	Unmodified	_WYDRRLHYRRR_					0	0	0			REV__sp|Q6SWB7|UL14_HCMVMUncharacterizedproteinUL14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL14PE=3SV=1	REV__sp|Q6SWB7|UL14_HCMVMUncharacterizedproteinUL14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL14PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.7848510742188	3	559.637946	1675.89201	0.61611	0.0003448	-3.5663	-0.0019958	-2.9502	-0.001651	559.6361483441902	64.9	0.44013	64.9	64.71	65.15	0					23	10	3	0	0	0	0.026559	1	5954	5954		1.523	1.1516	1	555230	+		64057	29425	52846	52895	70387	70387					0.08109840768338472
WYDRRLHYRRR	11	Unmodified	_WYDRRLHYRRR_					0	0	0			REV__sp|Q6SWB7|UL14_HCMVMUncharacterizedproteinUL14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL14PE=3SV=1	REV__sp|Q6SWB7|UL14_HCMVMUncharacterizedproteinUL14OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL14PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	559.637946	1675.89201	-0.6882	-0.00038514	-1.7505	-0.00097967	-2.4387	-0.0013648	559.9711852043138	67.91	0.73899	65.249	64.842	65.581	-2.661	0.17438	0.0023133	NaN	1.3219	23	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20992	+		64058	29425	52846	52895							0.08109840768338472
WYDVRMLLP	9	Unmodified	_WYDVRMLLP_					0	0	0		ENSG00000180113|ENST00000316081|TDRD6;nc|ENSG00000180113|O60522-2|TDRD6;TDRD6|p.V938Wfs*4|1|0.11|ENSG00000180113|chr6:46690940-46690940|G/-|frameshift_variant	ENSG00000180113|ENST00000316081|TDRD6	ENSG00000180113|ENST00000316081|TDRD6	MULTI-MSMS	OvCa9_classI_Rep3	3	596.8179931640625	2	596.812802	1191.61105	3.1335	0.0018701	2.7756	0.0016565	5.9091	0.0035267	596.8143723057162	57.305	2.9299	54.154	53.228	56.158	-3.1504					108	83	2	0	0	0	0.67509	1	1728	1728		23.042	3.939	1	40554			64059	7857	52847	52896	70388	70388					0.02290949013649879
WYENSNLN	8	Unmodified	_WYENSNLN_					0	0	0			REV__tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	REV__tr|A0A7D6VTH0|A0A7D6VTH0_9CLOTCyclicbeta1-2glucansynthetaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02305PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.3328247070312	2	520.227613	1038.44067	-1.3769	-0.00071633	-2.3728	-0.0012344	-3.7498	-0.0019507	520.2259827593828	71.858	0.77655	68.402	68.074	68.851	-3.4563					20	15	2	0	0	0	0.028476	1	5548	5548		44.117	0	1	25262	+		64060	31603	52848	52897	70389	70389					-0.07700870384269365
WYFWRRHVFIW	11	Unmodified	_WYFWRRHVFIW_					0	0	0		ENSG00000187688|ENST00000338560|TRPV2;TRPV2|p.E582Gfs*74|1|0.57|ENSG00000187688|chr17:16432052-16432053|-/A|frameshift_variant;ENST00000441875.1_1_17:16330801-16331912:+|nuORF	ENSG00000187688|ENST00000338560|TRPV2	ENSG00000187688|ENST00000338560|TRPV2	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.8350830078125	3	565.961367	1694.86227	0.33432	0.00018921	-2.9573	-0.0016737	-2.623	-0.0014845	566.2935569909903	31.273	0.23692	31.273	31.124	31.361	0					6	4	2	0	0	0	0.026549	1	1270	1270		3.6191	2.0961	1	23482			64061	8424	52849	52898	70390	70390					0.042635087702819874
WYGWHFPEL	9	Unmodified	_WYGWHFPEL_					0	0	0		ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	ENSG00000055044|ENST00000264279|NOP58	MULTI-MSMS	OvCa99_classI_Rep5	1	617.7899169921875	2	617.787641	1233.56073	0.66897	0.00041328	1.6302	0.0010071	2.2992	0.0014204	617.7885055892336	141.82	2.1775	141.82	141.44	143.61	0					109	43	5	0	0	0	0.11171	2	16568	16568;16592		94.006	39.242	1	818980			64062	1216	52850	52899	70391;70392	70391					-0.046708373198725894
WYGYHFPEL	9	Unmodified	_WYGYHFPEL_					0	0	0		ENSG00000101361|ENST00000329276|NOP56;ENST00000484998.5_1_20:2635830-2636687:+|nuORF;ENST00000480992.5_1_20:2635438-2636687:+|nuORF	ENSG00000101361|ENST00000329276|NOP56	ENSG00000101361|ENST00000329276|NOP56	MULTI-MSMS	OvCa99_classI_Rep5	1	606.2818603515625	2	606.279649	1210.54475	1.5067	0.00091346	0.39619	0.0002402	1.9029	0.0011537	606.2800013316534	124.73	0.75035	124.73	124.42	125.17	0					36	15	4	0	0	0	0.11171	2	14392	14392;14415		94.006	29.799	1	674840			64063	2172	52851	52900	70393;70394	70393					-0.052105435567682434
WYIFMKYLFYY	11	Unmodified	_WYIFMKYLFYY_					0	0	0		ENST00000496524.5_1_2:110889257-110901337:-|nuORF	ENST00000496524.5_1_2:110889257-110901337:-|nuORF	ENST00000496524.5_1_2:110889257-110901337:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	545.8208618164062	3	546.268475	1635.7836	-1.0642	-0.00058135	1.4038	0.00076688	0.33962	0.00018552	546.6031335038444	84.24	0.20918	82.694	82.588	82.797	-1.5462					6	3	2	0	0	0	0.02653	1	7235	7235		6.3209	2.9122	1	11571			64064	12789	52852	52901	70395	70395					-0.00886524369639119
WYKFYNFRFYY	11	Unmodified	_WYKFYNFRFYY_					0	0	0			REV__tr|A0A7D6VVM5|A0A7D6VVM5_9CLOTProbablemultidrugresistanceproteinNorMOS=ClostridiumintestinaleOX=36845GN=HZF06_05535PE=4SV=1	REV__tr|A0A7D6VVM5|A0A7D6VVM5_9CLOTProbablemultidrugresistanceproteinNorMOS=ClostridiumintestinaleOX=36845GN=HZF06_05535PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.7998046875	3	566.269755	1695.78744	0.31695	0.00017948	1.2877	0.00072921	1.6047	0.00090869	566.2706361083251	31.832	0.59598	31.832	31.658	32.254	0					23	11	3	0	0	0	0.026538	1	1360	1360		3.026	2.6855	1	97112	+		64065	31725	52853	52902	70396	70396					-0.032627185516048485
WYLVRRCRRRA	11	Unmodified	_WYLVRRCRRRA_					0	0	0			REV__ENSG00000104219|ENST00000262096|ZDHHC2	REV__ENSG00000104219|ENST00000262096|ZDHHC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.31268310546875	3	512.293122	1533.85754	-0.058649	-3.0046E-05	2.3041	0.0011804	2.2455	0.0011503	512.2941277791185	60.981	0.34089	60.981	60.859	61.2	0					14	7	3	0	0	0	0.026277	1	5376	5376		23.378	9.2919	1	213070	+		64066	17652	52854	52903	70397	70397					0.11196301355880678
WYMERRPHRMF	11	Unmodified	_WYMERRPHRMF_					0	0	0			REV__ENSG00000137338|ENST00000682144|PGBD1	REV__ENSG00000137338|ENST00000682144|PGBD1	MULTI-SECPEP	OvCa9_classI_Rep3	3	537.2960205078125	3	536.92734	1607.76019	0.35539	0.00019082	3.399	0.001825	3.7544	0.0020158	537.2633983511138	91.2	0.4526	89.176	88.93	89.382	-2.0241					13	8	2	0	0	0	0.02642	1	5719	5719		10.104	7.2521	1	17675	+		64067	19446	52855	52904	70398	70398					-0.019378486352934488
WYNRVKIKA	9	Unmodified	_WYNRVKIKA_					0	0	0			REV__ENST00000573850.1_1_16:27709674-27761267:+|nuORF	REV__ENST00000573850.1_1_16:27709674-27761267:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	589.34228515625	2	589.345658	1176.67676	-5.1334	-0.0030254	0.48454	0.00028556	-4.6489	-0.0027398	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.61208	1	12486	12486		30.504	6.9809	1	589610	+		64068	16657	52856	52905	70399	70399					0.09549106250847217
WYQTKFETL	9	Unmodified	_WYQTKFETL_					0	0	0		ENSG00000135480|ENST00000331817|KRT7;CON__Q3KNV1;CON__P08729;CON__Q9DCV7;ENST00000552183.1_1_12:52635324-52638266:+|nuORF;ENST00000551130.1_1_12:52635330-52637101:+|nuORF;DTX4-KRT7|1|fusion	ENSG00000135480|ENST00000331817|KRT7;DTX4-KRT7|1|fusion	ENSG00000135480|ENST00000331817|KRT7	MULTI-MSMS	OvCa99_classI_Rep5	1	608.307861328125	2	608.305864	1214.59717	2.4089	0.0014654	0.046442	2.8251E-05	2.4554	0.0014936	608.3058191490946	98.706	0.89889	98.706	98.419	99.318	0					55	21	3	0	0	0	0.018335	2	10868	10868;10896		148.99	64.071	1	7807100		+	64069	646;764	52857	52906	70400;70401	70400					-0.0015400521381252474
YAAGVHSVL	9	Unmodified	_YAAGVHSVL_					0	0	0		ENSG00000242802|ENST00000649063|AP5Z1;ENST00000490487.1_1_7:4829477-4830874:+|nuORF	ENSG00000242802|ENST00000649063|AP5Z1	ENSG00000242802|ENST00000649063|AP5Z1	MULTI-MSMS	OvCa99_classI_Rep5	1	458.74920654296875	2	458.747985	915.481417	-0.12786	-5.8655E-05	0.16402	7.5245E-05	0.036163	1.659E-05	458.7479186079656	70.519	0.78239	70.519	70.286	71.068	0					40	19	4	0	0	0	0.27546	1	6767	6767		65.803	17.888	1	3511400			64070	9368	52858	52907	70402	70402					0.020295157259852203
YAALTVSAI	9	Unmodified	_YAALTVSAI_					0	0	0			REV__RPS6KB1-VMP1|4|fusion	REV__RPS6KB1-VMP1|4|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	455.28009033203125	2	454.758018	907.501483	0.87868	0.00039959	-0.15902	-7.2314E-05	0.71966	0.00032727	454.7575767503043	89.52	0.69262	86.945	86.656	87.348	-2.575					18	13	2	0	0	0	0.027433	1	7700	7700		68.485	12.98	1	13890	+		64071	29342	52859	52908	70403	70403					0.04403266665940464
YAALTVSAI	9	Unmodified	_YAALTVSAI_					0	0	0			REV__RPS6KB1-VMP1|4|fusion	REV__RPS6KB1-VMP1|4|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	454.758018	907.501483	3.1695	0.0014413	-3.5172	-0.0015995	-0.34771	-0.00015812	454.75619758458777	88.29	0.58954	86.923	86.74	87.329	-1.3676	9.6299E-06	-0.0015321	NaN	76.847	15	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12167	+		64072	29342	52859	52908							0.04403266665940464
YAALTVSAI	9	Unmodified	_YAALTVSAI_					0	0	0			REV__RPS6KB1-VMP1|4|fusion	REV__RPS6KB1-VMP1|4|fusion	MULTI-MATCH	OvCa9_classI_Rep3	3		2	454.758018	907.501483	-0.34393	-0.0001564	0.34855	0.00015851	0.0046239	2.1028E-06	454.75852473796857	89.032	0.88042	86.901	86.559	87.44	-2.1309	-0.021973	0.0019838	NaN	76.847	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14343	+		64073	29342	52859	52908							0.04403266665940464
YAAQASQAL	9	Unmodified	_YAAQASQAL_					0	0	0		ENSG00000118705|ENST00000237530|RPN2;ENST00000462163.1_1_20:35807747-35832332:+|nuORF	ENSG00000118705|ENST00000237530|RPN2	ENSG00000118705|ENST00000237530|RPN2	MSMS	OvCa99_classI_Rep5	1	461.73675537109375	2	461.735074	921.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	67.023	1	67.023	66.523	67.523	0								0	0	0	0.015318	1	6247	6247		136.27	37.639	1				64074	3322	52860	52909	70404	70404					-0.00827378516294175
YAARLWVSKK	10	Unmodified	_YAARLWVSKK_					0	0	0			REV__nc|ENSG00000101161|O94906-2|PRPF6	REV__nc|ENSG00000101161|O94906-2|PRPF6	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3533325195312	2	611.358765	1220.70298	-2.3862	-0.0014588	-2.1755	-0.00133	-4.5616	-0.0027888	611.3572929291362	147.43	3.7918	146.48	144.56	148.35	-0.9512					254	75	5	0	0	0	0.72319	1	12543	12543		27.882	5.9224	1	250910	+		64075	17476	52861	52910	70405	70405					0.10145375422325742
YAASPRLA	8	Unmodified	_YAASPRLA_					0	0	0			REV__ENSG00000143816|ENST00000272164|WNT9A	REV__ENSG00000143816|ENST00000272164|WNT9A	MULTI-MSMS	OvCa99_classI_Rep5	1	424.7348327636719	2	424.734877	847.455202	-0.55546	-0.00023592	0.74337	0.00031573	0.18791	7.9811E-05	424.7350492158217	44.343	0.66677	44.343	43.995	44.662	0					26	14	3	0	0	0	0.7224	1	2995	2995		38.806	0	1	465630	+		64076	19870	52862	52911	70406	70406					0.02537246554527428
YACDFHRYG	9	Unmodified	_YACDFHRYG_					0	0	0			REV__ENST00000525281.5_1_10:4868459-4888008:+|nuORF	REV__ENST00000525281.5_1_10:4868459-4888008:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.6091918945312	2	566.237458	1130.46036	0.17598	9.9645E-05	-2.5637	-0.0014517	-2.3878	-0.001352	566.7373547962524	30.657	0.19918	30.657	30.532	30.731	0					5	3	2	0	0	0	0.027462	1	1190	1190		11.511	0	1	12553	+		64077	21100	52863	52912	70407	70407					-0.09964817645186486
YADEIIDLN	9	Unmodified	_YADEIIDLN_					0	0	0			REV__tr|A0A553SKJ7|A0A553SKJ7_NIACIFructose-1,6-bisphosphataseclass3OS=NialliacirculansOX=1397GN=fbpPE=3SV=1	REV__tr|A0A553SKJ7|A0A553SKJ7_NIACIFructose-1,6-bisphosphataseclass3OS=NialliacirculansOX=1397GN=fbpPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	532.8092651367188	2	533.258579	1064.50261	-1.5923	-0.00084909	-2.3187	-0.0012365	-3.911	-0.0020856	533.2588558036691	76.787	0.15617	74.997	74.894	75.051	-1.7894					4	2	2	0	0	0	0.02741	1	6366	6366		71.296	0	1	5143.1	+		64078	30132	52864	52913	70408	70408					-0.02706563755782554
YADPAQGNN	9	Unmodified	_YADPAQGNN_					0	0	0			REV__nc|ENSG00000072201|Q8TBB1-2|LNX1	REV__nc|ENSG00000072201|Q8TBB1-2|LNX1	MULTI-MSMS	OvCa99_classI_Rep5	1	475.2073974609375	2	475.204138	948.393724	3.28	0.0015587	3.2686	0.0015533	6.5486	0.0031119	475.20554774955286	97.383	0.60347	97.383	97.135	97.738	0					30	13	3	0	0	0	0.37135	1	10712	10712		54.776	2.4771	1	926900	+		64079	16914	52865	52914	70409	70409					-0.08253729935427145
YAEVGRVL	8	Unmodified	_YAEVGRVL_					0	0	0		ENSG00000131503|ENST00000360839|ANKHD1;nc|ENSG00000131503|Q8IWZ3-4|ANKHD1;nc|ENSG00000131503|Q8IWZ3-6|ANKHD1;ENST00000514252.1_1_4:73978989-74017230:-|nuORF;nc|ENSG00000132466|O75179-6|ANKRD17;nc|ENSG00000132466|O75179-7|ANKRD17;nc|ENSG00000132466|O75179-2|ANKRD17;ENSG00000132466|ENST00000358602|ANKRD17	ENSG00000131503|ENST00000360839|ANKHD1;ENST00000514252.1_1_4:73978989-74017230:-|nuORF	ENST00000514252.1_1_4:73978989-74017230:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	453.75738525390625	2	453.75581	905.497067	0.55551	0.00025206	-0.17424	-7.9061E-05	0.38127	0.000173	453.75563511748413	73.838	1.526	73.838	73.52	75.046	0					68	38	3	0	0	0	0.42649	2	7250	7250;7277		84.916	8.1414	1	9029600			64080	4072;4139	52866	52915	70410;70411	70410					0.04053802243049631
YAFDFARQS	9	Unmodified	_YAFDFARQS_					0	0	0		nc|ENSG00000109184|Q92564-2|DCUN1D4	nc|ENSG00000109184|Q92564-2|DCUN1D4	nc|ENSG00000109184|Q92564-2|DCUN1D4	MULTI-MSMS	OvCa99_classI_Rep5	1	552.7611083984375	2	552.759081	1103.50361	1.2951	0.0007159	1.0254	0.00056682	2.3206	0.0012827	552.7595790165883	83.567	0.58636	83.567	83.335	83.921	0					44	13	4	0	0	0	0.12515	1	8699	8699		90.37	19.074	1	3445900			64081	14952	52867	52916	70412	70412					-0.04400304596242677
YAFIFMNL	8	Oxidation (M)	_YAFIFM(Oxidation (M))NL_		YAFIFM(1)NL		YAFIFM(63)NL	0	0	1			REV__ENST00000330374.6_1_X:150574361-150574568:+|nuORF	REV__ENST00000330374.6_1_X:150574361-150574568:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	517.7545776367188	2	517.754421	1033.49429	2.3136	0.0011979	-3.728	-0.0019302	-1.4144	-0.00073229	517.7522869435652	87.899	0.54253	87.899	87.628	88.171	0					30	12	3	0	0	0	0.60486	1	9314	9314		62.978	11.786	1	2926900	+		64082	24527	52868	52917	70413	70413		560			-0.021117892061283783
YAFPKAVSV	9	Unmodified	_YAFPKAVSV_					0	0	0		ENSG00000141526|ENST00000582743|SLC16A3;ENST00000581642.1_1_17:80193878-80194172:+|nuORF;ENST00000584781.5_1_17:80193878-80195055:+|nuORF;ENST00000579572.1_1_17:80193878-80195110:+|nuORF	ENSG00000141526|ENST00000582743|SLC16A3	ENSG00000141526|ENST00000582743|SLC16A3	MULTI-MSMS	OvCa99_classI_Rep5	1	491.27471923828125	2	491.273835	980.533118	1.8818	0.00092447	-0.12344	-6.0642E-05	1.7584	0.00086383	491.273645285943	92.739	0.9196	92.739	92.385	93.305	0					48	21	3	0	0	0	0.094616	2	10020	10020;10049		98.629	35.651	1	7066000			64083	4923	52869	52918	70414;70415	70414					0.04207259419899856
YAFRNPMEA	9	Unmodified	_YAFRNPMEA_					0	0	0		ENSG00000173451|ENST00000308086|THAP2	ENSG00000173451|ENST00000308086|THAP2	ENSG00000173451|ENST00000308086|THAP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.33154296875	2	549.755484	1097.49641	2.4136	0.0013269	-1.3575	-0.0007463	1.0561	0.00058062	549.755020281906	75.368	0.47339	75.368	75.128	75.601	0					25	11	4	0	0	0	0.027462	1	7519	7519		20.947	0	1	510060			64084	7377	52870	52919	70416	70416					-0.048433604683168596
YAFSARPL	8	Unmodified	_YAFSARPL_					0	0	0		ENST00000419783.1_2_3:49395567-49395990:-|nuORF;nc|ENSG00000233276|P07203-2|GPX1;ENSG00000233276|ENST00000419783|GPX1	ENST00000419783.1_2_3:49395567-49395990:-|nuORF	ENST00000419783.1_2_3:49395567-49395990:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	462.7520751953125	2	462.750527	923.486502	1.5464	0.00071559	0.56797	0.00026283	2.1144	0.00097842	462.7506538861692	83.029	0.97582	83.029	82.781	83.757	0					38	22	3	0	0	0	0.36941	1	8623	8623		94.006	22.711	1	1030000			64085	11656	52871	52920	70417	70417					0.021698195886074245
YAFSVARPL	9	Unmodified	_YAFSVARPL_					0	0	0		nc|ENSG00000085185|Q5H9F3-4|BCORL1;ENSG00000085185|ENST00000540052|BCORL1;BCORL1|p.S894Rfs*26|1|0.34|ENSG00000085185|chrX:130015450-130015465|GCTCCTTCGTTCCAGA/-|frameshift_variant;BCORL1|p.F895Sfs*33|1|0.08|ENSG00000085185|chrX:130015455-130015456|-/CCACTTCC|frameshift_variant;nc|ENSG00000085185|Q5H9F3-1|BCORL1	nc|ENSG00000085185|Q5H9F3-4|BCORL1	nc|ENSG00000085185|Q5H9F3-4|BCORL1	MULTI-SECPEP	OvCa9_classI_Rep2	2	512.809814453125	2	512.284734	1022.55492	-0.27571	-0.00014124	-1.4053	-0.00071989	-1.681	-0.00086113	512.2839577844734	93.979	0.86147	92.88	92.696	93.558	-1.0995					22	16	2	0	0	0	0.027462	1	8407	8407		37.159	8.0096	1	101990			64086	1723	52872	52921	70418	70418					0.04454064168453442
YAFVRPVIL	9	Unmodified	_YAFVRPVIL_					0	0	0		ENST00000568689.5_1_16:733170-734340:-|nuORF;ENST00000565302.5_1_16:733531-734319:-|nuORF;ENST00000569441.5_1_16:733170-733950:-|nuORF;nc|ENSG00000161999|Q96S16-2|JMJD8;ENSG00000161999|ENST00000609261|JMJD8	ENST00000568689.5_1_16:733170-734340:-|nuORF	ENST00000568689.5_1_16:733170-734340:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.8016357421875	2	539.326402	1076.63825	1.7958	0.00096851	0.11195	6.0379E-05	1.9077	0.0010289	539.3266814424636	117.18	0.69141	117.18	116.82	117.51	0					23	14	3	0	0	0	0.027462	1	13425	13425		30.504	22.813	1	146760			64087	13871	52873	52922	70419	70419					0.10299800616326138
YAFYSLLIY	9	Unmodified	_YAFYSLLIY_					0	0	0		nc|ENSG00000167702|Q96AC6|KIFC2;ENSG00000167702|ENST00000645548|KIFC2	nc|ENSG00000167702|Q96AC6|KIFC2	nc|ENSG00000167702|Q96AC6|KIFC2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	576.8248291015625	2	576.802426	1151.5903	-0.35294	-0.00020358	4.2892	0.002474	3.9362	0.0022704	576.8048528759776	109.58	0.89347	107.85	107.52	108.42	-1.7256					41	16	3	0	0	0	0.027462	1	10114	10114		33.516	0	1	30927			64088	6835	52874	52923	70420	70420					0.02056681905651203
YAGDPQSHG	9	Unmodified	_YAGDPQSHG_					0	0	0			REV__nc|ENSG00000144355|P56177-2|DLX1	REV__nc|ENSG00000144355|P56177-2|DLX1	MULTI-SECPEP	OvCa99_classI_Rep5	1	465.27984619140625	2	466.198856	930.383159	0.14142	6.5931E-05	-3.6444	-0.001699	-3.503	-0.0016331	466.19712730028147	32.458	0.44579	32.458	32.254	32.7	0					13	8	2	0	0	0	0.027462	1	1436	1436		3.6843	0	1	18594	+		64089	19904	52875	52924	70421	70421					-0.08481712589843937
YAGFLIGAGIA	11	Unmodified	_YAGFLIGAGIA_					0	0	0		ENSG00000129951|ENST00000520876|PLPPR3;nc|ENSG00000129951|Q6T4P5-2|PLPPR3;nc|ENSG00000129951|Q6T4P5-3|PLPPR3	ENSG00000129951|ENST00000520876|PLPPR3	ENSG00000129951|ENST00000520876|PLPPR3	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.798828125	2	526.792392	1051.57023	0.19454	0.00010248	-2.4282	-0.0012792	-2.2337	-0.0011767	527.2915427339502	162.22	0.25288	162.22	162.02	162.28	0					6	4	2	0	0	0	0.025902	1	19021	19021		24.203	1.1603	1	89122			64090	3949	52876	52925	70422	70422					0.046509309656585174
YAGLHLLIFI	10	Unmodified	_YAGLHLLIFI_					0	0	0		chr5:124062510-124213455|90|11.21|0.0|12.03|-|2|TE_info:L1PA4,L1PA4_dup4151,L1,LINE,donor,+,124213455,124219314|LINC01170,None|37	chr5:124062510-124213455|90|11.21|0.0|12.03|-|2|TE_info:L1PA4,L1PA4_dup4151,L1,LINE,donor,+,124213455,124219314|LINC01170,None|37	chr5:124062510-124213455|90|11.21|0.0|12.03|-|2|TE_info:L1PA4,L1PA4_dup4151,L1,LINE,donor,+,124213455,124219314|LINC01170,None|37	MULTI-SECPEP	OvCa9_classI_Rep2	2	579.7999877929688	2	580.347335	1158.68012	-1.0606	-0.00061553	-2.8689	-0.0016649	-3.9295	-0.0022805	580.3456288508687	115.79	1.0396	115.67	115.39	116.43	-0.11777					36	20	3	0	0	0	0.026839	1	11058	11058		44.531	12.897	1	56298			64091	495	52877	52926	70423	70423					0.10712356304861714
YAGNAATLV	9	Unmodified	_YAGNAATLV_					0	0	0			REV__nc|ENSG00000116704|Q9NTN3-2|SLC35D1	REV__nc|ENSG00000116704|Q9NTN3-2|SLC35D1	MULTI-SECPEP	OvCa99_classI_Rep5	1	441.2066345214844	2	440.232168	878.449782	1.7166	0.00075569	-1.6278	-0.0007166	0.088776	3.9082E-05	440.2313057217637	45.646	0.86954	45.646	45.373	46.242	0					26	19	2	0	0	0	0.027462	1	3175	3175		42.396	16.946	1	574400	+		64092	18314	52878	52927	70424	70424					0.005695229720458883
YAHIHSDLVE	10	Unmodified	_YAHIHSDLVE_					0	0	0			REV__nc|ENSG00000106278|P23471-2|PTPRZ1	REV__nc|ENSG00000106278|P23471-2|PTPRZ1	MULTI-MSMS	OvCa99_classI_Rep5	1	592.3021240234375	2	592.290745	1182.56694	1.4981	0.00088733	-0.52897	-0.00031331	0.96916	0.00057402	592.2903536205913	147.28	0.72966	147.28	147.01	147.74	0					33	14	3	0	0	0	0.6104	1	17224	17224		40.778	0	1	221930	+		64093	17788	52879	52928	70425	70425					-0.017043638790028126
YAHPSGTAL	9	Unmodified	_YAHPSGTAL_					0	0	0		ENSG00000196526|ENST00000420658|AFAP1;ENST00000513842.1_1_4:7765494-7800689:-|nuORF;nc|ENSG00000196526|Q8N556|AFAP1;AFAP1-KCNIP4|1|fusion;AFAP1-KCNIP4|2|fusion	ENSG00000196526|ENST00000420658|AFAP1	ENSG00000196526|ENST00000420658|AFAP1	MULTI-MSMS	OvCa99_classI_Rep5	1	458.7308349609375	2	458.729792	915.445031	0.26888	0.00012334	-0.14143	-6.4879E-05	0.12745	5.8466E-05	458.7296162017016	52.764	0.65041	52.764	52.522	53.172	0					36	14	3	0	0	0	0.085069	1	4169	4169		101.21	29.916	1	4990000			64094	8620	52880	52929	70426	70426					-0.016073611707156488
YAIGLVMRL	9	Unmodified	_YAIGLVMRL_					0	0	0		ENSG00000188921|ENST00000495827|HACD4;ENST00000488436.1_1_9:21017882-21026717:-|nuORF	ENSG00000188921|ENST00000495827|HACD4	ENSG00000188921|ENST00000495827|HACD4	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.3019409179688	2	518.304613	1034.59467	0.55772	0.00028907	0.12292	6.3711E-05	0.68064	0.00035278	518.304363077801	123.94	0.95881	123.94	123.74	124.7	0					39	20	3	0	0	0	0.027417	1	14293	14293		76.847	25.511	1	884060			64095	8519	52881	52930	70427	70427					0.07875867847542395
YAIHSDDIF	9	Unmodified	_YAIHSDDIF_					0	0	0			REV__tr|A0A7D6ZZE5|A0A7D6ZZE5_9CLOTtRNA(Guanine-N1)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05980PE=4SV=1	REV__tr|A0A7D6ZZE5|A0A7D6ZZE5_9CLOTtRNA(Guanine-N1)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05980PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	541.2542724609375	2	540.753464	1079.49238	1.7442	0.0009432	-0.37935	-0.00020513	1.3649	0.00073807	540.7536361240926	78.789	1.2725	78.789	77.968	79.24	0					75	30	5	0	0	0	0.13154	1	7992	7992		88.643	11.325	1	8625500	+		64096	32407	52882	52931	70428	70428					-0.0441912669039084
YAIMAINII	9	Unmodified	_YAIMAINII_					0	0	0		tr|A0A7D6ZUR3|A0A7D6ZUR3_9CLOTCardiolipinsynthaseOS=ClostridiumintestinaleOX=36845GN=clsPE=3SV=1	tr|A0A7D6ZUR3|A0A7D6ZUR3_9CLOTCardiolipinsynthaseOS=ClostridiumintestinaleOX=36845GN=clsPE=3SV=1	tr|A0A7D6ZUR3|A0A7D6ZUR3_9CLOTCardiolipinsynthaseOS=ClostridiumintestinaleOX=36845GN=clsPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.7345275878906	2	511.291171	1020.56779	0.11614	5.9383E-05	0.40637	0.00020777	0.52252	0.00026716	511.29116092748205	122.54	0.29653	121.17	120.96	121.26	-1.3666					7	5	2	0	0	0	0.027462	1	11548	11548		26.796	0	1	6498			64097	35782	52883	52932	70429	70429					0.05832759236329821
YAKDDPLEF	9	Unmodified	_YAKDDPLEF_					0	0	0		ENSG00000138448|ENST00000261023|ITGAV;nc|ENSG00000138448|P06756-2|ITGAV;nc|ENSG00000138448|P06756-3|ITGAV	ENSG00000138448|ENST00000261023|ITGAV;nc|ENSG00000138448|P06756-3|ITGAV	nc|ENSG00000138448|P06756-3|ITGAV	MULTI-MSMS	OvCa99_classI_Rep5	1	549.2621459960938	2	549.261122	1096.50769	1.5154	0.00083237	0.40487	0.00022238	1.9203	0.0010548	549.2612706056786	92.208	1.6695	92.208	91.879	93.549	0					136	39	6	0	0	0	0.014964	2	9970	9942;9970		153.04	78.781	1	18079000			64098	4689;15046	52884	52933	70430;70431	70431					-0.03670259893192451
YAKKVNKTV	9	Unmodified	_YAKKVNKTV_					0	0	0		tr|A0A553SRB0|A0A553SRB0_NIACIEndo-beta-N-acetylglucosaminidaseOS=NialliacirculansOX=1397GN=CEQ21_00765PE=4SV=1	tr|A0A553SRB0|A0A553SRB0_NIACIEndo-beta-N-acetylglucosaminidaseOS=NialliacirculansOX=1397GN=CEQ21_00765PE=4SV=1	tr|A0A553SRB0|A0A553SRB0_NIACIEndo-beta-N-acetylglucosaminidaseOS=NialliacirculansOX=1397GN=CEQ21_00765PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	526.2745361328125	2	525.818941	1049.62333	-0.89486	-0.00047053	0.16362	8.6035E-05	-0.73124	-0.0003845	525.8188740030467	94.503	1.5479	92.035	91.714	93.262	-2.4685					63	30	4	0	0	0	0.02744	1	8360	8360		29.17	0	1	733180			64099	34245	52885	52934	70432	70432					0.10050308748304815
YAKLGAVL	8	Unmodified	_YAKLGAVL_					0	0	0			REV__nc|ENSG00000153093|Q9NUZ1-2|ACOXL	REV__nc|ENSG00000153093|Q9NUZ1-2|ACOXL	MULTI-MSMS	OvCa99_classI_Rep5	1	417.75885009765625	2	417.757821	833.501089	2.4014	0.0010032	0.029685	1.2401E-05	2.4311	0.0010156	417.75778802482785	93.019	0.58315	93.019	92.803	93.386	0					29	13	3	0	0	0	0.52992	1	10086	10086		74.517	2.6391	1	1128600	+		64100	20320	52886	52935	70433	70433					0.07767891736750698
YAKLGAVL	8	Unmodified	_YAKLGAVL_					0	0	0			REV__nc|ENSG00000153093|Q9NUZ1-2|ACOXL	REV__nc|ENSG00000153093|Q9NUZ1-2|ACOXL	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	417.757821	833.501089	2.4014	0.0010032	0.029685	1.2401E-05	2.4311	0.0010156	417.75778802482785	93.019	0.58315	93.019	92.803	93.386	0	0	0	NaN	74.517	29	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1128600	+		64101	20320	52886	52935							0.07767891736750698
YAKLLHRY	8	Unmodified	_YAKLLHRY_					0	0	0		nc|ENSG00000103264|Q5XUX0-2|FBXO31;ENSG00000103264|ENST00000311635|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	nc|ENSG00000103264|Q5XUX0-2|FBXO31	MULTI-MSMS	OvCa99_classI_Rep5	1	532.3099975585938	2	532.306001	1062.59745	-0.0081029	-4.3132E-06	-0.24785	-0.00013193	-0.25596	-0.00013625	532.3056389332233	52.935	0.56379	52.935	52.741	53.305	0					21	12	2	0	0	0	0.56195	1	4184	4184		71.296	18.359	1	1172000			64102	2301	52887	52936	70434	70434					0.06865459296705012
YAKPPSHH	8	Unmodified	_YAKPPSHH_					0	0	0		ENSG00000198933|ENST00000578982|TBKBP1	ENSG00000198933|ENST00000578982|TBKBP1	ENSG00000198933|ENST00000578982|TBKBP1	MULTI-MSMS	OvCa99_classI_Rep5	1	468.7406921386719	2	468.737951	935.46135	-0.75845	-0.00035552	3.5163	0.0016482	2.7579	0.0012927	468.7393653376789	66.002	0.70049	66.002	65.831	66.531	0					29	17	3	0	0	0	0.71369	1	6098	6098		40.573	5.3719	1	1780600			64103	8910	52888	52937	70435	70435					-0.008962352139633367
YAKQTQPIY	9	Unmodified	_YAKQTQPIY_					0	0	0			REV__nc|ENSG00000172403|Q9UMS6-4|SYNPO2	REV__nc|ENSG00000172403|Q9UMS6-4|SYNPO2	MULTI-MSMS	OvCa99_classI_Rep5	1	556.2938842773438	2	556.292756	1110.57096	2.3026	0.0012809	-2.365	-0.0013156	-0.062396	-3.471E-05	556.29143241491	82.834	0.46935	82.834	82.609	83.078	0					24	10	3	0	0	0	0.48324	1	8599	8599		44.117	5.3107	1	763280	+		64104	21696	52889	52938	70436	70436					0.02009725614720992
YAKQTQPIY	9	Unmodified	_YAKQTQPIY_					0	0	0			REV__nc|ENSG00000172403|Q9UMS6-4|SYNPO2	REV__nc|ENSG00000172403|Q9UMS6-4|SYNPO2	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	556.292756	1110.57096	2.3026	0.0012809	-2.365	-0.0013156	-0.062396	-3.471E-05	556.29143241491	82.834	0.46935	82.834	82.609	83.078	0	0	0	NaN	44.117	24	10	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	763280	+		64105	21696	52889	52938							0.02009725614720992
YAKSKSSLI	9	Unmodified	_YAKSKSSLI_					0	0	0			REV__ENST00000584342.5_1_17:27052953-27062286:+|nuORF	REV__ENST00000584342.5_1_17:27052953-27062286:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	498.7897033691406	2	498.78985	995.565146	-0.69611	-0.00034721	0.14781	7.3725E-05	-0.5483	-0.00027349	498.7898766980179	115.24	3.0674	115.12	114.7	117.77	-0.11777					207	61	7	0	0	0	0.24951	1	11044	11044		68.787	4.5796	1	2910400	+		64106	20666	52890	52939	70437	70437					0.06718627103043673
YALFGMSGLSF	11	Unmodified	_YALFGMSGLSF_					0	0	0			REV__nc|ENSG00000166507|P52849-2|NDST2	REV__nc|ENSG00000166507|P52849-2|NDST2	MULTI-SECPEP	OvCa99_classI_Rep5	1	597.7195434570312	2	596.788992	1191.56343	1.09	0.00065049	-3.239	-0.001933	-2.149	-0.0012825	597.2885690998522	157.2	0.60115	157.2	156.9	157.5	0					15	11	2	0	0	0	0.025909	1	18387	18387		34.173	14.176	1	42546	+		64107	21201	52891	52940	70438	70438					-0.024687499772198862
YALHWLVL	8	Unmodified	_YALHWLVL_					0	0	0		nc|ENSG00000102054|Q16576-2|RBBP7;RBBP7|p.I319Nfs*10|1|0.08|ENSG00000102054|chrX:16852558-16852559|-/T|frameshift_variant;ENSG00000102054|ENST00000380087|RBBP7	nc|ENSG00000102054|Q16576-2|RBBP7	nc|ENSG00000102054|Q16576-2|RBBP7	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.271240234375	2	507.792195	1013.56984	-0.68884	-0.00034979	-3.143	-0.001596	-3.8319	-0.0019458	507.79035059485625	53.368	0.51974	53.368	53.172	53.692	0					20	11	2	0	0	0	0.028476	1	4223	4223		33.493	7.9189	1	372870			64108	14931	52892	52941	70439	70439					0.06359556036454705
YALKRLITG	9	Unmodified	_YALKRLITG_					0	0	0		ENSG00000132382|ENST00000254718|MYBBP1A;nc|ENSG00000132382|Q9BQG0-2|MYBBP1A;ENST00000570986.1_1_17:4457199-4458649:-|nuORF	ENSG00000132382|ENST00000254718|MYBBP1A	ENSG00000132382|ENST00000254718|MYBBP1A	MULTI-MSMS	OvCa9_classI_Rep4_	4	517.8192138671875	2	517.821484	1033.62842	-1.9356	-0.0010023	-2.1747	-0.0011261	-4.1103	-0.0021284	517.8202333199824	147.34	1.4932	145.91	145.48	146.98	-1.435					65	29	3	0	0	0	0.70177	1	14480	14480		17.365	0.89182	1	151000			64109	4133	52893	52942	70440	70440					0.11294612610936383
YALLCHSM	8	Unmodified	_YALLCHSM_					0	0	0		nc|ENSG00000141497|Q9H091-2|ZMYND15;ENSG00000141497|ENST00000433935|ZMYND15;ENST00000574829.5_1_17:4643771-4647168:+|nuORF;nc|ENSG00000141497|Q9H091-3|ZMYND15	nc|ENSG00000141497|Q9H091-2|ZMYND15;nc|ENSG00000141497|Q9H091-3|ZMYND15	nc|ENSG00000141497|Q9H091-2|ZMYND15	MULTI-SECPEP	OvCa99_classI_Rep5	1	469.2315673828125	2	469.217149	936.419744	0.38579	0.00018102	-1.0266	-0.00048168	-0.64078	-0.00030066	469.2164988410689	71.857	0.58067	71.857	71.668	72.249	0					22	13	2	0	0	0	0.028476	1	6988	6988		50.025	11.218	1	538640			64110	15062;15063	52894	52943	70441	70441					-0.05100875289144824
YALLGIPL	8	Unmodified	_YALLGIPL_					0	0	0		nc|ENSG00000082482|O95069-4|KCNK2;nc|ENSG00000095981|Q96T55-5|KCNK16;ENSG00000095981|ENST00000437525|KCNK16;nc|ENSG00000095981|Q96T55|KCNK16;nc|ENSG00000095981|Q96T55-4|KCNK16;ENSG00000124249|ENST00000372861|KCNK15;ENSG00000171303|ENST00000302909|KCNK3;nc|ENSG00000082482|O95069-2|KCNK2;nc|ENSG00000082482|O95069-3|KCNK2;ENSG00000082482|ENST00000444842|KCNK2	nc|ENSG00000082482|O95069-4|KCNK2	nc|ENSG00000082482|O95069-4|KCNK2	MULTI-SECPEP	OvCa99_classI_Rep5	1	430.235595703125	2	430.268022	858.521491	-0.56163	-0.00024165	-4.0289	-0.0017335	-4.5906	-0.0019752	430.26618898621916	37.51	0.59596	37.51	37.344	37.94	0					24	12	3	0	0	0	0.028476	1	2045	2045		33.493	11.791	1	349140			64111	1680	52895	52944	70442	70442					0.08657062396559922
YALLLLHHDAG	11	Unmodified	_YALLLLHHDAG_					0	0	0			REV__ENST00000472641.1_1_6:32116492-32119637:-|nuORF	REV__ENST00000472641.1_1_6:32116492-32119637:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	612.3099975585938	2	611.83258	1221.65061	2.6565	0.0016253	1.1046	0.00067586	3.7612	0.0023012	612.3349111563595	102.79	0.46507	102.79	102.59	103.05	0					13	10	2	0	0	0	0.025746	1	11442	11442		19.104	0	1	383190	+		64112	23706	52896	52945	70443	70443					0.04864792288708486
YALMSDNLL	9	Unmodified	_YALMSDNLL_					0	0	0		ENSG00000130487|ENST00000648057|KLHDC7B;nc|ENSG00000130487|Q96G42|KLHDC7B	ENSG00000130487|ENST00000648057|KLHDC7B	ENSG00000130487|ENST00000648057|KLHDC7B	MULTI-MSMS	OvCa99_classI_Rep5	1	520.7598876953125	2	520.260068	1038.50558	1.3167	0.00068503	-4.2676	-0.0022203	-2.9509	-0.0015352	520.7587659782885	117.25	0.79395	117.25	116.95	117.74	0					58	16	5	0	0	0	0.12365	1	13418	13418		90.777	0	1	1905600			64113	3989	52897	52946	70444	70444					-0.012130119026551256
YALNQNMV	8	Unmodified	_YALNQNMV_					0	0	0			REV__nc|ENSG00000117385|Q32P28-4|P3H1	REV__nc|ENSG00000117385|Q32P28-4|P3H1	MULTI-MSMS	OvCa99_classI_Rep5	1	476.7318115234375	2	476.731477	951.448402	2.0746	0.00098902	0.56554	0.00026961	2.6401	0.0012586	476.731669470668	137.77	0.8573	137.77	137.45	138.31	0					29	18	2	0	0	0	0.72922	1	16087	16087		37.028	0	1	92153	+		64114	18347	52898	52947	70445	70445					-0.029264343883596666
YALPHAVLHL	10	Unmodified	_YALPHAVLHL_					0	0	0		ENST00000450451.1_1_1:238090483-238090852:+|nuORF	ENST00000450451.1_1_1:238090483-238090852:+|nuORF	ENST00000450451.1_1_1:238090483-238090852:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	567.3287353515625	2	567.326934	1132.63931	1.6521	0.00093726	0.70274	0.00039868	2.3548	0.0013359	567.3272046078696	90.666	1.8808	90.666	90.421	92.301	0					131	45	5	0	0	0	0.49566	1	9724	9724		54.765	1.4132	1	7206700			64115	12039	52899	52948	70446	70446					0.07830014985211164
YAMIMVPP	8	Unmodified	_YAMIMVPP_					0	0	0			REV__TLL1|p.T303Pfs*30|1|0.05|ENSG00000038295|chr4:166008038-166008038|A/-|frameshift_variant	REV__TLL1|p.T303Pfs*30|1|0.05|ENSG00000038295|chr4:166008038-166008038|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	460.7745056152344	2	461.232267	920.449982	-0.35012	-0.00016149	-2.8379	-0.0013089	-3.188	-0.0014704	461.23061700381385	38.899	0.44666	35.973	35.799	36.246	-2.9264					13	8	2	0	0	0	0.028476	1	1583	1583		24.504	8.8622	1	12502	+		64116	29511	52900	52949	70447	70447					-0.013425166239585451
YAMVLLPLLF	10	Unmodified	_YAMVLLPLLF_					0	0	0			REV__ENSG00000186810|ENST00000373693|CXCR3	REV__ENSG00000186810|ENST00000373693|CXCR3	MULTI-SECPEP	OvCa9_classI_Rep3	3	589.7720947265625	2	590.345946	1178.67734	-1.0784	-0.00063661	1.9368	0.0011434	0.85847	0.00050679	590.8487439315367	78.807	0.74373	76.461	75.956	76.699	-2.346					17	14	2	0	0	0	0.026839	1	4183	4183		35.201	8.4046	1	17546	+		64117	22612	52901	52950	70448	70448					0.09514764855680369
YAMVLLPLLF	10	Unmodified	_YAMVLLPLLF_					0	0	0			REV__ENSG00000186810|ENST00000373693|CXCR3	REV__ENSG00000186810|ENST00000373693|CXCR3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	590.345946	1178.67734	-0.55662	-0.0003286	0.23381	0.00013803	-0.32281	-0.00019057	590.3461032932752	78.001	0.4194	76.212	75.99	76.409	-1.7894	-0.12473	-0.0011842	NaN	26.796	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	10849	+		64118	22612	52901	52950							0.09514764855680369
YANIGKTL	8	Unmodified	_YANIGKTL_					0	0	0		ENSG00000115841|ENST00000354545|RMDN2;nc|ENSG00000115841|Q96LZ7-3|RMDN2;ENST00000440353.5_1_2:38177721-38224681:+|nuORF;nc|ENSG00000115841|Q96LZ7-4|RMDN2;nc|ENSG00000115841|Q96LZ7-2|RMDN2	ENSG00000115841|ENST00000354545|RMDN2;nc|ENSG00000115841|Q96LZ7-2|RMDN2	nc|ENSG00000115841|Q96LZ7-2|RMDN2	MULTI-MSMS	OvCa99_classI_Rep5	1	440.2516174316406	2	440.25036	878.486168	1.155	0.00050848	-0.98743	-0.00043472	0.16755	7.3765E-05	440.24980687825854	64.58	0.62142	64.58	64.334	64.955	0					30	14	3	0	0	0	0.19367	1	5879	5879		125.81	35.037	1	1058000			64119	3132;14979	52902	52951	70449	70449					0.04206399868758126
YANLKSAKLV	10	Unmodified	_YANLKSAKLV_					0	0	0			REV__tr|A0A553SFX2|A0A553SFX2_NIACIYheC/YheDfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09645PE=4SV=1	REV__tr|A0A553SFX2|A0A553SFX2_NIACIYheC/YheDfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_09645PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8283081054688	2	553.832049	1105.64954	-0.12008	-6.6502E-05	-3.596	-0.0019916	-3.7161	-0.0020581	553.8299276335473	138.55	4.0786	138.32	136.16	140.24	-0.22696					182	83	3	0	0	0	0.78463	1	13758	13758		20.947	6.0821	1	64451	+		64120	29633	52903	52952	70450	70450					0.10094577919790026
YANSKAVTL	9	Unmodified	_YANSKAVTL_					0	0	0		ENSG00000164091|ENST00000296490|WDR82;ENST00000487402.1_1_3:52291508-52301068:-|nuORF	ENSG00000164091|ENST00000296490|WDR82	ENSG00000164091|ENST00000296490|WDR82	MULTI-MSMS	OvCa99_classI_Rep5	1	483.7672119140625	2	483.766374	965.518196	0.16903	8.1772E-05	-0.85467	-0.00041346	-0.68564	-0.00033169	483.76596304286596	57.461	1.558	57.461	57.138	58.696	0					107	36	5	0	0	0	0.0079542	3	4828	4808;4828;4861		199.7	89.367	1	41884000			64121	6407	52904	52953	70451;70452;70453	70452					0.03405767551907957
YARLRGIPE	9	Unmodified	_YARLRGIPE_					0	0	0		ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	ENSG00000167972|ENST00000301732|ABCA3	MULTI-MSMS	OvCa9_classI_Rep2	2	537.80517578125	2	537.806365	1073.59818	-1.2521	-0.00067338	0.93955	0.0005053	-0.31254	-0.00016809	537.8066559834224	74.159	1.7758	72.188	71.745	73.521	-1.9711					97	33	4	0	0	0	0.29717	1	6048	6048		63.306	0	1	636380			64122	6854	52905	52954	70454	70454					0.06432253945763478
YARMQMEVSL	10	Unmodified	_YARMQMEVSL_					0	0	0			REV__ENSG00000197724|ENST00000359246|PHF2	REV__ENSG00000197724|ENST00000359246|PHF2	MULTI-MSMS	OvCa99_classI_Rep5	1	614.2988891601562	2	614.296659	1226.57876	1.0029	0.00061605	3.9911	0.0024517	4.994	0.0030678	614.2987355130588	157.02	1.3106	157.02	156.7	158.01	0					79	25	6	0	0	0	0.43433	1	18391	18391		63.534	7.1001	1	555610	+		64123	22946	52906	52955	70455	70455					-0.025462064516659666
YARNVQLMHAS	11	Unmodified	_YARNVQLMHAS_					0	0	0			REV__nc|ENSG00000121446|A5PLK6-4|RGSL1	REV__nc|ENSG00000121446|A5PLK6-4|RGSL1	MULTI-MSMS	OvCa9_classI_Rep3	3	645.32568359375	2	645.324596	1288.63464	-0.50398	-0.00032523	3.3292	0.0021484	2.8252	0.0018232	645.3266872760835	99.389	1.4299	97.704	97.009	98.438	-1.685					95	27	5	0	0	0	0.65947	1	6695	6695		39.253	7.723	1	2398300	+		64124	18545	52907	52956	70456	70456					0.0018676278016300785
YARPSSEVI	9	Unmodified	_YARPSSEVI_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.255615234375	2	511.269281	1020.52401	2.5137	0.0012852	-1.7831	-0.00091165	0.73064	0.00037355	511.2681296127177	86.787	0.41857	86.787	86.594	87.013	0					14	9	2	0	0	0	0.027462	1	9192	9192		27.882	3.6795	1	283770			64125	1341	52908	52957	70457	70457					0.0145686606357458
YARPSSEVI	9	Unmodified	_YARPSSEVI_					0	0	0		ENSG00000066044|ENST00000407627|ELAVL1;nc|ENSG00000066044|Q15717-2|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	ENSG00000066044|ENST00000407627|ELAVL1	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	511.269281	1020.52401	-0.47462	-0.00024266	0.51957	0.00026564	0.044958	2.2986E-05	511.2693055881392	89.061	1.1349	86.458	86.237	87.371	-2.6027	-0.086451	0.001209	NaN	27.882	61	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	494480			64126	1341	52908	52957							0.0145686606357458
YASGRTTGIVM	11	Unmodified	_YASGRTTGIVM_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ACTB|p.K238Rfs*46|1|0.21|ENSG00000075624|chr7:5528372-5528372|C/-|frameshift_variant;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2	ENSG00000075624|ENST00000646664|ACTB	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OvCa99_classI_Rep5	1	578.2969970703125	2	578.294973	1154.57539	-0.41325	-0.00023898	0.87722	0.00050729	0.46397	0.00026831	578.2950553973972	68.715	1.0336	68.715	68.356	69.39	0					57	24	4	0	0	0	0.25759	1	6498	6498		72.243	18.892	1	3235500			64127	1537	52909	52958	70458	70458					0.004288667659693601
YASKIESLT	9	Unmodified	_YASKIESLT_					0	0	0			REV__tr|A0A7D6ZVT2|A0A7D6ZVT2_9CLOTYjgBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16190PE=4SV=1	REV__tr|A0A7D6ZVT2|A0A7D6ZVT2_9CLOTYjgBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16190PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	506.2740783691406	2	506.27149	1010.52843	1.7132	0.00086734	2.8503	0.001443	4.5635	0.0023104	506.2727467608177	54.771	2.6321	51.6	50.779	53.411	-3.1715					173	88	3	0	0	0	0.66262	1	1389	1389		24.519	3.5723	1	154000	+		64128	32260	52910	52959	70459	70459					0.02358330486470095
YASPTCLF	8	Unmodified	_YASPTCLF_					0	0	0			REV__ENST00000567174.5_1_16:88711344-88711776:-|nuORF	REV__ENST00000567174.5_1_16:88711344-88711776:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	450.7703552246094	2	451.209847	900.40514	0.11469	5.1751E-05	-3.2242	-0.0014548	-3.1095	-0.001403	451.208372662843	95.939	1.3614	93.513	93.154	94.516	-2.4256					59	26	3	0	0	0	0.028476	1	8427	8427		28.254	2.8041	1	211000	+		64129	27709	52911	52960	70460	70460					-0.049046241656583334
YASPTCLF	8	Unmodified	_YASPTCLF_					0	0	0			REV__ENST00000567174.5_1_16:88711344-88711776:-|nuORF	REV__ENST00000567174.5_1_16:88711344-88711776:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	451.209847	900.40514	1.906	0.00086002	-5.1279	-0.0023138	-3.2219	-0.0014538	451.20737965056816	94.861	1.3873	93.761	92.958	94.345	-1.0995	0.12396	-0.00035264	NaN	28.254	46	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46606	+		64130	27709	52911	52960							-0.049046241656583334
YASPVRLR	8	Unmodified	_YASPVRLR_					0	0	0			REV__FCGBP|p.A2201S|1|0.13|ENSG00000275395|chr19:39892042-39892042|C/A|missense_variant	REV__FCGBP|p.A2201S|1|0.13|ENSG00000275395|chr19:39892042-39892042|C/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	481.28192138671875	2	481.282526	960.550499	-0.81055	-0.0003901	0.44052	0.00021201	-0.37003	-0.00017809	481.28269787534566	57.799	2.0625	55.007	54.377	56.44	-2.7921					121	40	4	0	0	0	0.66704	3	4113	4108;4113;4144		50.025	9.6566	1	1037900	+		64131	28131	52912	52961	70461;70462;70463	70462					0.06864599745551914
YATHPFKF	8	Unmodified	_YATHPFKF_					0	0	0		nc|ENSG00000111912|Q8NI08-7|NCOA7;nc|ENSG00000111912|Q8NI08-2|NCOA7;ENSG00000111912|ENST00000392477|NCOA7;nc|ENSG00000111912|Q8NI08-5|NCOA7	nc|ENSG00000111912|Q8NI08-7|NCOA7	nc|ENSG00000111912|Q8NI08-7|NCOA7	MULTI-MSMS	OvCa99_classI_Rep5	1	505.75982666015625	2	505.758352	1009.50215	-0.2194	-0.00011096	0.74213	0.00037534	0.52274	0.00026438	505.75862231055436	71.287	0.60043	71.287	71.068	71.668	0					36	14	3	0	0	0	0.38598	1	6882	6882		90.777	24.973	1	3624600			64132	2867	52913	52962	70464	70464					-0.0022189389434288387
YAVDHMLVK	9	Oxidation (M)	_YAVDHM(Oxidation (M))LVK_		YAVDHM(1)LVK		YAVDHM(74)LVK	0	0	1			REV__nc|ENSG00000168685|P16871-4|IL7R	REV__nc|ENSG00000168685|P16871-4|IL7R	MULTI-MSMS	OvCa9_classI_Rep2	2	546.280029296875	2	546.281334	1090.54812	-0.58977	-0.00032218	0.71312	0.00038956	0.12335	6.7381E-05	546.2815975076795	64.153	1.9349	61.428	60.606	62.541	-2.7245					98	36	5	0	0	0	0.21395	1	4884	4884		73.975	7.5455	1	342820	+		64133	21394	52914	52963	70465	70465		500			0.00646383225603131
YAVDRAITH	9	Unmodified	_YAVDRAITH_					0	0	0		ENSG00000104824|ENST00000221419|HNRNPL;nc|ENSG00000104824|P14866-2|HNRNPL;ENST00000595443.5_1_19:39327988-39329682:-|nuORF;ENST00000595164.5_1_19:39327364-39331218:-|nuORF;ENST00000597731.1_1_19:39327364-39331218:-|nuORF;ENST00000601664.1_1_19:39329532-39330816:-|nuORF	ENSG00000104824|ENST00000221419|HNRNPL	ENSG00000104824|ENST00000221419|HNRNPL	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.734130859375	2	523.274898	1044.53524	-1.2654	-0.00066213	-2.1455	-0.0011227	-3.4108	-0.0017848	523.2753525887342	49.913	0.43441	49.913	49.679	50.114	0					23	9	4	0	0	0	0.027462	1	3749	3749		42.396	20.436	1	762650			64134	2394	52915	52964	70466	70466					0.014756881576886371
YAVEGRDL	8	Unmodified	_YAVEGRDL_					0	0	0		ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF;ENSG00000163479|ENST00000295702|SSR2	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	MSMS	OvCa99_classI_Rep5	1	461.7362060546875	2	461.735074	921.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.663	1	64.663	64.163	65.163	0								0	0	0	0.30129	1	5890	5890		79.713	5.7379	1				64135	6313	52916	52965	70467	70467					-0.00827378516294175
YAVEGRDL	8	Unmodified	_YAVEGRDL_					0	0	0		ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF;ENSG00000163479|ENST00000295702|SSR2	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	MSMS	OvCa99_classI_Rep5	1	461.7364501953125	2	461.735074	921.455596	NaN	NaN	NaN	NaN	NaN	NaN	NaN	64.863	1	64.863	64.363	65.363	0								0	0	0	0.30129	1	5920	5920		69.628	10.846	1				64136	6313	52916	52965	70468	70468					-0.00827378516294175
YAVEGRDLTL	10	Unmodified	_YAVEGRDLTL_					0	0	0		ENST00000532074.5_1_1:155984857-155990687:-|nuORF;ENST00000484320.6_1_1:155988041-155990687:-|nuORF;ENST00000368311.5_1_1:155984733-155990735:-|nuORF;ENST00000472898.5_1_1:155981561-155990687:-|nuORF;ENSG00000163479|ENST00000295702|SSR2	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	ENST00000532074.5_1_1:155984857-155990687:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	568.8023681640625	2	568.800946	1135.58734	1.9911	0.0011326	0.3231	0.00018378	2.3142	0.0013163	568.8010743903886	91.989	1.2199	91.989	91.415	92.635	0					68	28	4	0	0	0	0.12738	2	9917	9917;9947		106.68	37.896	1	6183900			64137	6313	52917	52966	70469;70470	70469					0.02496806780800398
YAWDLYKNK	9	Unmodified	_YAWDLYKNK_					0	0	0			REV__ENSG00000108651|ENST00000261708|UTP6	REV__ENSG00000108651|ENST00000261708|UTP6	MULTI-MSMS	OvCa99_classI_Rep5	1	602.3135375976562	2	600.806031	1199.59751	1.873	0.0011253	0.89685	0.00053883	2.7698	0.0016641	600.8059358426129	126.8	2.1904	126.8	125.85	128.04	0					178	47	7	0	0	0	0.62352	1	14647	14647		29.15	1.2673	1	7295500	+		64138	17900	52918	52967	70471	70471					0.005694145060488154
YAWGANEFAI	10	Unmodified	_YAWGANEFAI_					0	0	0			REV__tr|A0A7D7A5F0|A0A7D7A5F0_9CLOTGGGtGRTproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06980PE=4SV=1	REV__tr|A0A7D7A5F0|A0A7D7A5F0_9CLOTGGGtGRTproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06980PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	571.2683715820312	2	571.269281	1140.52401	-0.83554	-0.00047732	0.5808	0.00033179	-0.25475	-0.00014553	571.269595136517	124.3	1.1814	122.91	122.57	123.75	-1.3908					46	22	3	0	0	0	0.64697	1	11781	11781		36.447	0	1	107160	+		64139	32636	52919	52968	70472	70472					-0.04063133936415397
YAYDGKDYL	9	Unmodified	_YAYDGKDYL_					0	0	0		nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	MULTI-MSMS	OvCa99_classI_Rep5	1	554.255126953125	2	554.253297	1106.49204	2.0233	0.0011214	0.27334	0.0001515	2.2966	0.0012729	554.2533203582594	79.687	0.75993	79.687	79.474	80.234	0					27	18	2	0	0	0	0.035142	2	8129	8129;8160		131.03	0	1	5433500			64140	9014	52920	52969	70473;70474	70473					-0.05694546410222756
YAYDGKDYL	9	Unmodified	_YAYDGKDYL_					0	0	0		nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	MULTI-MATCH	OvCa9_classI_Rep2	2		2	554.253297	1106.49204	1.09	0.00060413	-0.55709	-0.00030877	0.5329	0.00029536	554.2524688492454	81.376	0.76003	79.727	79.315	80.075	-1.6485	0.178	-0.00098909	NaN	131.03	25	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21245			64141	9014	52920	52969							-0.05694546410222756
YAYDGKDYL	9	Unmodified	_YAYDGKDYL_					0	0	0		nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	MULTI-MATCH	OvCa9_classI_Rep3	3		2	554.253297	1106.49204	-1.0881	-0.00060306	1.2546	0.00069536	0.16652	9.2295E-05	554.2536786388231	81.672	1.1047	79.35	79.007	80.112	-2.3226	-0.19964	0.0010192	NaN	131.03	48	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	116550			64142	9014	52920	52969							-0.05694546410222756
YAYDGKDYL	9	Unmodified	_YAYDGKDYL_					0	0	0		nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	554.253297	1106.49204	-0.48375	-0.00026812	-0.2966	-0.00016439	-0.78035	-0.00043251	554.2531612187244	82.117	0.77534	79.434	79.204	79.979	-2.683	-0.11556	-0.00070034	NaN	131.03	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	100010			64143	9014	52920	52969							-0.05694546410222756
YAYDGKDYLA	10	Unmodified	_YAYDGKDYLA_					0	0	0		nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	MULTI-MSMS	OvCa99_classI_Rep5	1	589.7736206054688	2	589.771854	1177.52915	2.0757	0.0012242	0.35701	0.00021055	2.4327	0.0014348	589.771916183105	76.742	0.77463	76.742	76.518	77.293	0					49	18	4	0	0	0	0.33877	1	7709	7709		76.17	0	1	3780500			64144	9014	52921	52970	70475	70475					-0.052508748644640946
YAYDGKDYLA	10	Unmodified	_YAYDGKDYLA_					0	0	0		nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	MULTI-MSMS	OvCa9_classI_Rep3	3	589.7716674804688	2	589.771854	1177.52915	-1.3173	-0.00077693	1.0214	0.0006024	-0.29593	-0.00017453	589.7724067430232	78.482	1.7003	76.129	75.85	77.551	-2.3527					106	33	5	0	0	0	0.15355	4	4189	4178;4183;4189;4196		101.46	0	1	1158300			64145	9014	52921	52970	70476;70477;70478;70479	70478					-0.052508748644640946
YAYDGKDYLA	10	Unmodified	_YAYDGKDYLA_					0	0	0		nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	MULTI-MSMS	OvCa9_classI_Rep4_	4	589.77294921875	2	589.771854	1177.52915	-0.24359	-0.00014366	-0.49086	-0.00028949	-0.73445	-0.00043316	589.7714756340558	79.098	1.637	76.346	76.085	77.722	-2.7514					93	33	4	0	0	0	0.22073	3	6409	6397;6409;6424		91.265	0	1	1244600			64146	9014	52921	52970	70480;70481;70482	70481					-0.052508748644640946
YAYDGKDYLA	10	Unmodified	_YAYDGKDYLA_					0	0	0		nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	MULTI-MATCH	OvCa9_classI_Rep2	2		2	589.771854	1177.52915	-0.40335	-0.00023788	0.091961	5.4236E-05	-0.31139	-0.00018365	589.7717915873978	78.358	1.5782	76.618	76.039	77.617	-1.7398	-0.062022	-4.4493E-05	NaN	76.17	84	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	201580			64147	9014	52921	52970							-0.052508748644640946
YAYDGKDYLAL	11	Unmodified	_YAYDGKDYLAL_					0	0	0		nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	nc|ENSG00000204632|P17693-4|HLA-G	MULTI-MSMS	OvCa99_classI_Rep5	1	646.3176879882812	2	646.313886	1290.61322	1.9284	0.0012463	-0.65148	-0.00042106	1.2769	0.00082528	646.3134349089833	102.97	2.2815	102.97	102.68	104.96	0					170	53	6	0	0	0	0.064268	4	11472	11472;11500;11532;11566		106.88	0	1	62060000			64148	9014	52922	52971	70483;70484;70485;70486	70483					-0.020463437675516616
YAYFAYIL	8	Unmodified	_YAYFAYIL_					0	0	0			REV__tr|A0A553SPN4|A0A553SPN4_NIACIAminoacidpermeaseOS=NialliacirculansOX=1397GN=CEQ21_26710PE=4SV=1	REV__tr|A0A553SPN4|A0A553SPN4_NIACIAminoacidpermeaseOS=NialliacirculansOX=1397GN=CEQ21_26710PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.7706604003906	2	512.262936	1022.51132	0.88225	0.00045195	1.4455	0.0007405	2.3278	0.0011924	512.2636790920395	157.92	0.89964	157.92	157.25	158.15	0					22	17	2	0	0	0	0.028476	1	18524	18524		16.705	0	1	23890	+		64149	30553	52923	52972	70487	70487					0.0009645467133623242
YAYTGRLEL	9	Unmodified	_YAYTGRLEL_					0	0	0		nc|ENSG00000109790|Q96PQ7-5|KLHL5;ENSG00000109790|ENST00000504108|KLHL5;nc|ENSG00000109790|Q96PQ7|KLHL5;nc|ENSG00000109790|Q96PQ7-2|KLHL5;nc|ENSG00000109790|Q96PQ7-3|KLHL5;nc|ENSG00000109790|Q96PQ7-4|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	nc|ENSG00000109790|Q96PQ7-5|KLHL5	MULTI-MSMS	OvCa99_classI_Rep5	1	543.2877807617188	2	543.284931	1084.55531	1.9284	0.0010477	0.45104	0.00024505	2.3795	0.0012927	543.2849519623657	92.988	0.62566	92.988	92.721	93.346	0					40	14	4	0	0	0	0.2784	1	10060	10060		65.465	12.529	1	5297900			64150	2735	52924	52973	70488	70488					0.016414390976706272
YCERVRDLL	9	Unmodified	_YCERVRDLL_					0	0	0		nc|ENSG00000054523|O60333-3|KIF1B;KIF1A|p.L181Hfs*13|1|0.15|ENSG00000130294|chr2:240786401-240786402|-/ATGATAT|frameshift_variant;ENSG00000129250|ENST00000320785|KIF1C;nc|ENSG00000054523|O60333-2|KIF1B;ENSG00000054523|ENST00000676179|KIF1B;nc|ENSG00000054523|O60333-4|KIF1B;nc|ENSG00000130294|Q12756|KIF1A;ENSG00000130294|ENST00000498729|KIF1A;nc|ENSG00000130294|Q12756-2|KIF1A	nc|ENSG00000054523|O60333-3|KIF1B;nc|ENSG00000054523|O60333-2|KIF1B;nc|ENSG00000130294|Q12756|KIF1A	nc|ENSG00000054523|O60333-3|KIF1B	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8026123046875	2	583.802965	1165.59138	0.97841	0.0005712	-0.94752	-0.00055316	0.03089	1.8034E-05	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.6653	1	1341	1341		24.203	1.1603	1	155970			64151	14875;1210;3976	52925	52974	70489	70489					0.015205730028583275
YCFLIILV	8	Unmodified	_YCFLIILV_					0	0	0			REV__ENSG00000138696|ENST00000515059|BMPR1B	REV__ENSG00000138696|ENST00000515059|BMPR1B	MULTI-MSMS	OvCa9_classI_Rep3	3	492.2852783203125	2	492.285357	982.556161	-4.5363	-0.0022332	4.1165	0.0020265	-0.41978	-0.00020665	492.28737227483106	149.34	1.4054	148.39	148.05	149.46	-0.95119					58	27	4	0	0	0	0.75058	1	12663	12663		16.705	0	1	182000	+		64152	19561	52926	52975	70490	70490					0.06418562213025325
YCGVGADRA	9	Unmodified	_YCGVGADRA_					0	0	0		ENSG00000135821|ENST00000331872|GLUL;ENST00000491322.1_1_1:182354870-182355047:-|nuORF	ENSG00000135821|ENST00000331872|GLUL	ENSG00000135821|ENST00000331872|GLUL	MULTI-SECPEP	OvCa9_classI_Rep4_	4	455.8072814941406	2	456.205627	910.396701	-0.37816	-0.00017252	-0.63864	-0.00029135	-1.0168	-0.00046387	456.205454228971	117.5	1.2051	116.15	115.63	116.84	-1.3444					39	22	3	0	0	0	0.027462	1	10938	10938		24.203	0	1	26176			64153	4417	52927	52976	70491	70491					-0.062081780822722976
YCGVGADRA	9	Unmodified	_YCGVGADRA_					0	0	0		ENSG00000135821|ENST00000331872|GLUL;ENST00000491322.1_1_1:182354870-182355047:-|nuORF	ENSG00000135821|ENST00000331872|GLUL	ENSG00000135821|ENST00000331872|GLUL	MULTI-MATCH	OvCa9_classI_Rep3	3		2	456.205627	910.396701	-0.81022	-0.00036963	0.19264	8.7883E-05	-0.61758	-0.00028174	456.20567761292205	117.13	0.6937	116.09	115.84	116.54	-1.0324	-0.029663	0.00037522	NaN	17.365	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9384.9			64154	4417	52927	52976							-0.062081780822722976
YCKLKKGRK	9	Unmodified	_YCKLKKGRK_					0	0	0			REV__ENSG00000172817|ENST00000310193|CYP7B1	REV__ENSG00000172817|ENST00000310193|CYP7B1	MULTI-MSMS	OvCa9_classI_Rep2	2	562.3427734375	2	562.342061	1122.66957	-1.142	-0.00064221	3.1807	0.0017886	2.0387	0.0011464	562.3438081477608	141.84	4.7959	141.62	140.24	145.03	-0.22697					133	96	2	0	0	0	0.6959	1	14363	14363		19.36	6.4008	1	113870	+		64155	21728	52928	52977	70492	70492					0.11314050378769025
YCKPSWIFGFV	11	Unmodified	_YCKPSWIFGFV_					0	0	0		ENST00000394072.7_1_17:38633842-38637100:-|nuORF;ENSG00000131746|ENST00000254051|TNS4	ENST00000394072.7_1_17:38633842-38637100:-|nuORF	ENST00000394072.7_1_17:38633842-38637100:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	449.5569763183594	3	449.558248	1345.65292	-0.14917	-6.706E-05	-2.4662	-0.0011087	-2.6153	-0.0011757	449.5569794841708	120.81	1.2244	119.46	119.19	120.41	-1.3479					71	23	4	0	0	0	0.71582	1	11369	11369		24.232	0	1	154690			64156	4087	52929	52978	70493	70493					-0.00608495297888112
YCKTQLCCPI	10	Carbamidomethyl (C)	_YC(Carbamidomethyl (C))KTQLCCPI_	YC(1)KTQLCCPI		YC(50)KTQLC(-50)C(-50)PI		0	1	0			REV__ENST00000477988.1_1_2:183790415-183790502:-|nuORF	REV__ENST00000477988.1_1_2:183790415-183790502:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	614.7822875976562	2	614.779787	1227.54502	0.040102	2.4654E-05	-0.081364	-5.0021E-05	-0.041262	-2.5367E-05	614.7798179121113	105.17	1.3993	105.17	104.83	106.23	0					65	31	3	0	0	0	0.49558	1	11791	11791		54.776	10.399	3	10562000	+		64157	26400	52930	52979	70494	70494	325				-0.059649512151054296
YCNFIELNL	9	Unmodified	_YCNFIELNL_					0	0	0			REV__ENST00000532302.1_1_11:34663985-34668016:+|nuORF	REV__ENST00000532302.1_1_11:34663985-34668016:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	564.776123046875	2	564.773342	1127.53213	3.6341	0.0020524	1.2413	0.00070105	4.8754	0.0027535	564.7738562800828	97.421	0.6452	97.421	97.135	97.78	0					45	14	4	0	0	0	0.33652	1	10720	10720		58.782	2.0609	1	3868600	+		64158	27231	52931	52980	70495	70495					-0.026533230113500395
YCNIPMTLI	9	Unmodified	_YCNIPMTLI_					0	0	0		ENSG00000169306|ENST00000378993|IL1RAPL1	ENSG00000169306|ENST00000378993|IL1RAPL1	ENSG00000169306|ENST00000378993|IL1RAPL1	MULTI-MSMS	OvCa99_classI_Rep5	1	534.266845703125	2	534.266838	1066.51912	-0.32897	-0.00017576	-3.4209	-0.0018277	-3.7499	-0.0020034	534.2649197907513	29.647	0.60043	29.647	29.486	30.086	0					19	11	3	0	0	0	0.48324	1	1079	1079		44.117	0	1	255580			64159	7000	52932	52981	70496	70496					-0.011474773950340023
YCPISIDGGLN	11	Unmodified	_YCPISIDGGLN_					0	0	0			REV__ENST00000590758.3_1_17:42883048-42908178:-|nuORF	REV__ENST00000590758.3_1_17:42883048-42908178:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.8204956054688	2	576.273706	1150.53286	-1.1257	-0.00064871	-2.2588	-0.0013017	-3.3845	-0.0019504	576.2720479538233	93.501	0.63008	90.993	90.763	91.393	-2.5072					25	13	4	0	0	0	0.02557	1	8189	8189		31.53	14.062	1	101730	+		64160	27920	52933	52982	70497	70497					-0.03638528362239413
YCQEMYPEL	9	Unmodified	_YCQEMYPEL_					0	0	0		nc|ENSG00000084234|Q06481-4|APLP2;nc|ENSG00000084234|Q06481-2|APLP2;ENSG00000084234|ENST00000338167|APLP2;nc|ENSG00000084234|Q06481-6|APLP2;nc|ENSG00000084234|Q06481|APLP2;nc|ENSG00000084234|Q06481-5|APLP2	nc|ENSG00000084234|Q06481-4|APLP2	nc|ENSG00000084234|Q06481-4|APLP2	MULTI-MSMS	OvCa99_classI_Rep5	1	588.2423095703125	2	588.241018	1174.46748	0.56337	0.0003314	1.1309	0.00066526	1.6943	0.00099666	588.2414683344155	160	0.93893	160	159.62	160.56	0					55	18	5	0	0	0	0.51865	1	18762	18762		40.778	1.972	1	407040			64161	1713	52934	52983	70498	70498					-0.11277265879607512
YCRVAKGLLAK	11	Unmodified	_YCRVAKGLLAK_					0	0	0			REV__KDM6A|p.F953Sfs*25|1|0.5|ENSG00000147050|chrX:45078424-45078425|TT/-|frameshift_variant;REV__nc|ENSG00000147050|O15550|KDM6A	REV__nc|ENSG00000147050|O15550|KDM6A	MULTI-MSMS	OvCa9_classI_Rep2	2	611.3563842773438	2	611.36045	1220.70635	-3.7398	-0.0022864	-3.3731	-0.0020622	-7.1129	-0.0043485	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.72459	1	15136	15136		20.947	2.6848	1	331570	+		64162	28331;20039	52935	52984	70499	70499					0.10482302204673033
YCSICLQQY	9	Unmodified	_YCSICLQQY_					0	0	0		nc|ENSG00000156931|Q8N3P4-2|VPS8;nc|ENSG00000156931|Q8N3P4-3|VPS8;ENSG00000156931|ENST00000625842|VPS8;ENST00000492449.5_1_3:184603882-184769810:+|nuORF	nc|ENSG00000156931|Q8N3P4-2|VPS8	nc|ENSG00000156931|Q8N3P4-2|VPS8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	561.3035888671875	2	560.743728	1119.4729	1.8136	0.0010169	1.3149	0.00073733	3.1285	0.0017543	560.7442733192146	33.03	1.4883	30.335	29.903	31.392	-2.6954					37	29	2	0	0	0	0.027462	1	796	796		21.96	0	1	11031			64163	5864	52936	52985	70500	70500					-0.08205542297127977
YCSPQPSPQSF	11	Unmodified	_YCSPQPSPQSF_					0	0	0		ENSG00000137414|ENST00000259963|FAM8A1	ENSG00000137414|ENST00000259963|FAM8A1	ENSG00000137414|ENST00000259963|FAM8A1	MULTI-MSMS	OvCa99_classI_Rep5	1	620.7691040039062	2	620.768788	1239.52302	-0.73229	-0.00045458	-2.4515	-0.0015218	-3.1838	-0.0019764	620.7672073805403	67.787	0.91518	67.787	67.566	68.481	0					45	22	3	0	0	0	0.21275	1	6359	6359		78.264	8.6362	1	6026800			64164	4583	52937	52986	70501	70501					-0.08715716367669302
YCVGGYLRDM	10	Unmodified	_YCVGGYLRDM_					0	0	0			REV__nc|ENSG00000113742|Q17RY0-3|CPEB4	REV__nc|ENSG00000113742|Q17RY0-3|CPEB4	MULTI-MSMS	OvCa9_classI_Rep4_	4	588.7626953125	2	588.762452	1175.51035	-1.5819	-0.00093139	3.8649	0.0022755	2.2829	0.0013441	588.7645240683959	127.15	0.84283	125.72	125.39	126.24	-1.4357					30	16	2	0	0	0	0.74374	1	12128	12128		25.574	1.0549	1	67932	+		64165	17863	52938	52987	70502	70502					-0.07038451031530712
YCVGGYLRDM	10	Unmodified	_YCVGGYLRDM_					0	0	0			REV__nc|ENSG00000113742|Q17RY0-3|CPEB4	REV__nc|ENSG00000113742|Q17RY0-3|CPEB4	MULTI-MATCH	OvCa9_classI_Rep2	2		2	588.762452	1175.51035	0.37391	0.00022014	1.9331	0.0011381	2.307	0.0013583	588.7633404741307	126.09	0.83744	125.86	125.6	126.44	-0.23589	0.072532	-0.0009402	NaN	25.574	29	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47057	+		64166	17863	52938	52987							-0.07038451031530712
YCVGGYLRDM	10	Unmodified	_YCVGGYLRDM_					0	0	0			REV__nc|ENSG00000113742|Q17RY0-3|CPEB4	REV__nc|ENSG00000113742|Q17RY0-3|CPEB4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	588.762452	1175.51035	-0.15624	-9.1991E-05	2.7631	0.0016268	2.6069	0.0015348	588.7638924777906	126.85	0.73093	125.78	125.49	126.22	-1.0715	-0.0028598	3.7175E-05	NaN	25.574	25	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82780	+		64167	17863	52938	52987							-0.07038451031530712
YCVGGYLRDM	10	Unmodified	_YCVGGYLRDM_					0	0	0			REV__nc|ENSG00000113742|Q17RY0-3|CPEB4	REV__nc|ENSG00000113742|Q17RY0-3|CPEB4	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	588.762452	1175.51035	-1.5819	-0.00093139	3.8649	0.0022755	2.2829	0.0013441	588.7645240683959	127.15	0.84283	125.72	125.39	126.24	-1.4357	-0.069673	0.0013345	NaN	25.574	30	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67932	+		64168	17863	52938	52987							-0.07038451031530712
YCWLCPILPQ	10	Unmodified	_YCWLCPILPQ_					0	0	0			REV__ENST00000468704.1_1_1:25669465-25678122:+|nuORF	REV__ENST00000468704.1_1_1:25669465-25678122:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	618.3040161132812	2	618.301213	1234.58787	2.4867	0.0015375	2.2301	0.0013788	4.7168	0.0029164	618.3023307124392	136.26	0.82465	134.72	134.45	135.27	-1.5437					40	16	3	0	0	0	0.59703	1	13227	13227		42.396	6.7778	1	85440	+		64169	26232	52939	52988	70503	70503					-0.020038130953480504
YCWQKKKT	8	Unmodified	_YCWQKKKT_					0	0	0			REV__nc|ENSG00000015171|Q15326-5|ZMYND11	REV__nc|ENSG00000015171|Q15326-5|ZMYND11	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.8109741210938	2	542.784044	1083.55354	0.41032	0.00022271	1.0018	0.00054376	1.4121	0.00076648	542.784619263198	72.593	0.51321	72.593	72.291	72.804	0					24	12	3	0	0	0	0.028476	1	7034	7034		29.15	3.5755	1	668520	+		64170	16516	52940	52989	70504	70504					0.015101068080412006
YCYSTHDLLG	10	Unmodified	_YCYSTHDLLG_					0	0	0			REV__ENSG00000186094|ENST00000371839|AGBL4	REV__ENSG00000186094|ENST00000371839|AGBL4	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.2957153320312	2	586.258056	1170.50156	2.7189	0.001594	-2.417	-0.001417	0.30189	0.00017699	586.256936273075	99.061	0.27709	99.061	98.877	99.154	0					8	6	2	0	0	0	0.027021	1	10936	10936		21.96	0	1	175920	+		64171	22556	52941	52990	70505	70505					-0.07687101396345497
YDAIIGAVDL	10	Unmodified	_YDAIIGAVDL_					0	0	0			REV__ENSG00000166532|ENST00000535829|RIMKLB	REV__ENSG00000166532|ENST00000535829|RIMKLB	MULTI-MSMS	OvCa99_classI_Rep5	1	525.2814331054688	2	525.279315	1048.54408	0.96992	0.00050948	1.1564	0.00060742	2.1263	0.0011169	525.2798026612573	143.64	1.0394	143.64	143.32	144.35	0					54	20	4	0	0	0	0.49558	1	16768	16768		54.776	5.5655	1	954910	+		64172	21204	52942	52991	70506	70506					0.02174617003538515
YDAKRTEVTL	10	Unmodified	_YDAKRTEVTL_					0	0	0		FOXM1|p.S414Lfs*4|1|0.05|ENSG00000111206|chr12:2864347-2864348|-/GCCTCCCAAG|frameshift_variant;FOXM1|p.E671Nfs*12|1|0.57|ENSG00000111206|chr12:2858922-2858922|G/-|frameshift_variant;nc|ENSG00000111206|Q08050-2|FOXM1;chr12:2864755-2866393|396|15.44|0.34|5.51|-|ENST00000627656|FOXM1,FOXM1;ENSG00000111206|ENST00000359843|FOXM1;nc|ENSG00000111206|Q08050-3|FOXM1;chr12:2861412-2864320|413|21.53|0.58|5.22|-|ENST00000342628|FOXM1,FOXM1;chr12:2859663-2861299|377|10.61|0.17|5.92|-|ENST00000342628|FOXM1,FOXM1	FOXM1|p.S414Lfs*4|1|0.05|ENSG00000111206|chr12:2864347-2864348|-/GCCTCCCAAG|frameshift_variant	FOXM1|p.S414Lfs*4|1|0.05|ENSG00000111206|chr12:2864347-2864348|-/GCCTCCCAAG|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	598.3209228515625	2	598.319502	1194.62445	4.0483	0.0024221	-0.014016	-8.3859E-06	4.0342	0.0024138	598.3194309070321	131.19	0.94769	129.71	129.35	130.3	-1.4779					34	19	4	0	0	0	0.5635	1	12605	12605		46.457	3.5925	1	45469			64173	314	52943	52992	70507	70507					0.0349247832657511
YDAPSHGP	8	Unmodified	_YDAPSHGP_					0	0	0			REV__ENSG00000105204|ENST00000323039|DYRK1B	REV__ENSG00000105204|ENST00000323039|DYRK1B	MULTI-MSMS	OvCa99_classI_Rep5	1	422.1864013671875	2	422.185217	842.355882	-0.37871	-0.00015988	0.28408	0.00011994	-0.094624	-3.9949E-05	422.1852282727745	50.571	0.83225	50.571	50.288	51.12	0					50	18	4	0	0	0	0.7043	1	3839	3839		42.474	1.9018	1	3977200	+		64174	17704	52944	52993	70508	70508					-0.0716019613022354
YDDELNKI	8	Unmodified	_YDDELNKI_					0	0	0			REV__ENST00000529199.1_1_11:66332352-66333563:-|nuORF	REV__ENST00000529199.1_1_11:66332352-66333563:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	505.2464904785156	2	505.245472	1008.47639	2.1898	0.0011064	-0.70135	-0.00035435	1.4884	0.00075202	505.245223866364	95.182	2.1038	95.182	94.819	96.923	0					98	49	4	0	0	0	0.57734	1	10404	10404		68.787	4.5796	1	2181300	+		64175	27187	52945	52994	70509	70509					-0.027508329272677656
YDFEPLPTLP	10	Unmodified	_YDFEPLPTLP_					0	0	0		nc|ENSG00000171798|Q76NI1-4|KNDC1;ENSG00000171798|ENST00000304613|KNDC1;ENST00000485110.5_1_10:134974025-134992777:+|nuORF;ENST00000478074.5_1_10:134974025-134987473:+|nuORF	nc|ENSG00000171798|Q76NI1-4|KNDC1	nc|ENSG00000171798|Q76NI1-4|KNDC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.8353881835938	2	596.300247	1190.58594	2.0598	0.0012283	-2.4225	-0.0014445	-0.36267	-0.00021626	596.8008166834823	117.49	0.23723	117.49	117.41	117.65	0					6	4	2	0	0	0	0.026665	1	13453	13453		34.173	6.0911	1	42157			64176	7234	52946	52995	70510	70510					-0.001728273079606879
YDFNLVLV	8	Unmodified	_YDFNLVLV_					0	0	0			REV__tr|A0A7D6VTY0|A0A7D6VTY0_9CLOTAminoacidadenylationdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18690PE=4SV=1	REV__tr|A0A7D6VTY0|A0A7D6VTY0_9CLOTAminoacidadenylationdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18690PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	491.76507568359375	2	491.765843	981.517133	0.62605	0.00030787	-3.1067	-0.0015278	-2.4807	-0.0012199	491.7642832688739	81.393	1.6575	81.393	81.037	82.694	0					77	39	3	0	0	0	0.64026	1	8429	8429		55.504	0.60963	1	17981000	+		64177	31637	52947	52996	70511	70511					0.025635531829948377
YDGIVIGTPV	10	Unmodified	_YDGIVIGTPV_					0	0	0		tr|A0A7D6ZFM9|A0A7D6ZFM9_9CLOTNAD(P)H-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18535PE=4SV=1	tr|A0A7D6ZFM9|A0A7D6ZFM9_9CLOTNAD(P)H-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18535PE=4SV=1	tr|A0A7D6ZFM9|A0A7D6ZFM9_9CLOTNAD(P)H-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18535PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	517.2831420898438	2	517.281857	1032.54916	0.7446	0.00038517	1.4624	0.00075649	2.207	0.0011417	517.2824814279011	154.73	1.213	154.73	154.42	155.63	0					61	23	4	0	0	0	0.53885	1	18117	18117		49.442	5.3247	1	675230			64178	35517	52948	52997	70512	70512					0.03418920866147346
YDHYDYGY	8	Unmodified	_YDHYDYGY_					0	0	0			REV__nc|ENSG00000125944|O43390-4|HNRNPR	REV__nc|ENSG00000125944|O43390-4|HNRNPR	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.2211303710938	2	548.206347	1094.39814	0.92985	0.00050975	0.092407	5.0658E-05	1.0223	0.00056041	548.205981385236	150.59	0.45081	150.59	150.39	150.84	0					12	8	2	0	0	0	0.028476	1	17632	17632		13.775	0	1	25261	+		64179	18761	52949	52998	70513	70513					-0.14528265512512917
YDIGVGKTI	9	Unmodified	_YDIGVGKTI_					0	0	0		tr|A0A7D6VVA0|A0A7D6VVA0_9CLOTM50familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04490PE=3SV=1	tr|A0A7D6VVA0|A0A7D6VVA0_9CLOTM50familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04490PE=3SV=1	tr|A0A7D6VVA0|A0A7D6VVA0_9CLOTM50familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04490PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	483.270263671875	2	483.26875	964.522947	2.1556	0.0010417	-0.43918	-0.00021224	1.7164	0.00082948	483.2684257119935	137.04	1.0943	137.04	136.73	137.82	0					60	22	4	0	0	0	0.091859	1	16007	16007		99.375	8.5983	1	2138000			64180	35215	52950	52999	70514	70514					0.03926651694678185
YDIGVGKTIL	10	Unmodified	_YDIGVGKTIL_					0	0	0		tr|A0A7D6VVA0|A0A7D6VVA0_9CLOTM50familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04490PE=3SV=1	tr|A0A7D6VVA0|A0A7D6VVA0_9CLOTM50familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04490PE=3SV=1	tr|A0A7D6VVA0|A0A7D6VVA0_9CLOTM50familymetallopeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_04490PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	539.8114013671875	2	539.810782	1077.60701	-0.27317	-0.00014746	-0.67076	-0.00036208	-0.94393	-0.00050954	539.8101802185419	104.76	0.81636	104.76	104.41	105.22	0					38	18	3	0	0	0	0.28845	1	11746	11746		82.241	13.454	1	2538700			64181	35215	52951	53000	70515	70515					0.07131182791590618
YDISCLRVI	9	Unmodified	_YDISCLRVI_					0	0	0			REV__ENSG00000187240|ENST00000375735|DYNC2H1	REV__ENSG00000187240|ENST00000375735|DYNC2H1	MULTI-MSMS	OvCa99_classI_Rep5	1	541.2882690429688	2	541.289159	1080.56377	1.4144	0.00076561	-3.0084	-0.0016284	-1.594	-0.00086279	541.2874697357297	111.86	1.1412	111.86	111.51	112.66	0					70	24	5	0	0	0	0.22621	1	12707	12707		71.877	3.0906	1	4827800	+		64182	22636	52952	53001	70516	70516					0.026706697426334358
YDKETNLI	8	Unmodified	_YDKETNLI_					0	0	0			REV__tr|A0A7D6VSX2|A0A7D6VSX2_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08500PE=4SV=1	REV__tr|A0A7D6VSX2|A0A7D6VSX2_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08500PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	498.2574768066406	2	498.25584	994.497126	-0.33326	-0.00016605	1.3842	0.0006897	1.051	0.00052365	498.2563714429942	60.255	0.7326	60.255	59.997	60.73	0					41	17	3	0	0	0	0.69415	1	5245	5245		44.531	0	1	1255300	+		64183	31550	52953	53002	70517	70517					-0.0003424254761057455
YDKNLILH	8	Unmodified	_YDKNLILH_					0	0	0		tr|A0A7D7A0T7|A0A7D7A0T7_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11405PE=3SV=1	tr|A0A7D7A0T7|A0A7D7A0T7_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11405PE=3SV=1	tr|A0A7D7A0T7|A0A7D7A0T7_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11405PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	508.2810974121094	2	508.282192	1014.54983	-1.3178	-0.00066984	-2.7461	-0.0013958	-4.064	-0.0020656	508.2805601120073	45.174	1.7186	42.136	41.867	43.586	-3.0385					74	32	3	0	0	0	0.56113	2	2285	2285;2295		71.378	8.0716	1	984500			64184	36007	52954	53003	70518;70519	70518					0.04313760305853975
YDLAYGVVF	9	Unmodified	_YDLAYGVVF_					0	0	0			REV__ENSG00000165704|ENST00000298556|HPRT1	REV__ENSG00000165704|ENST00000298556|HPRT1	MULTI-MSMS	OvCa99_classI_Rep5	1	523.7630615234375	2	523.7633	1045.51205	-2.8991	-0.0015184	-2.1752	-0.0011393	-5.0742	-0.0026577	523.7620197599407	104.17	0.97141	104.17	103.77	104.74	0					54	22	4	0	0	0	0.34496	1	11653	11653		57.811	0	1	2170300	+		64185	17316	52955	53004	70520	70520					-0.008887506796099842
YDLRKSKQLE	10	Unmodified	_YDLRKSKQLE_					0	0	0			REV__ENSG00000169371|ENST00000308588|SNUPN	REV__ENSG00000169371|ENST00000308588|SNUPN	MULTI-MSMS	OvCa99_classI_Rep5	1	640.3563232421875	2	640.353877	1278.6932	0.017433	1.1163E-05	4.0305	0.0025809	4.0479	0.0025921	640.3562971517529	47.46	0.95204	47.46	47.208	48.16	0					55	21	4	0	0	0	0.5635	1	3407	3407		26.693	4.733	1	1690200	+		64186	21457	52956	53005	70521	70521					0.0650014262625973
YDNLKVHERIH	11	Unmodified	_YDNLKVHERIH_					0	0	0		ENSG00000180855|ENST00000301547|ZNF443	ENSG00000180855|ENST00000301547|ZNF443	ENSG00000180855|ENST00000301547|ZNF443	MULTI-MSMS	OvCa99_classI_Rep5	1	475.2513732910156	3	475.252875	1422.7368	-0.11633	-5.5285E-05	-3.3202	-0.0015779	-3.4365	-0.0016332	475.25134160960954	29.962	0.59826	29.962	29.785	30.383	0					38	11	5	0	0	0	0.70587	1	1109	1109		27.644	2.5179	1	1035800			64187	7891	52957	53006	70522	70522					0.04233752123445811
YDPCEGMVTV	10	Carbamidomethyl (C)	_YDPC(Carbamidomethyl (C))EGMVTV_	YDPC(1)EGMVTV		YDPC(55)EGMVTV		0	1	0		ENSG00000073734|ENST00000650372|ABCB11	ENSG00000073734|ENST00000650372|ABCB11	ENSG00000073734|ENST00000650372|ABCB11	MULTI-MSMS	OvCa9_classI_Rep3	3	585.743896484375	2	585.743924	1169.4733	-2.3871	-0.0013982	2.4867	0.0014566	0.099654	5.8372E-05	585.7451569514557	101.38	1.3104	99.77	99.446	100.76	-1.6053					69	24	4	0	0	0	0.49558	2	6930	6930;6938		54.776	21.964	1	477130			64188	1499	52958	53007	70523;70524	70523	9				-0.10466167367962953
YDPVRERKM	9	Oxidation (M)	_YDPVRERKM(Oxidation (M))_		YDPVRERKM(1)		YDPVRERKM(82)	0	0	1		tr|A0A553SQ58|A0A553SQ58_NIACI3-deoxy-7-phosphoheptulonatesynthaseOS=NialliacirculansOX=1397GN=aroFPE=4SV=1	tr|A0A553SQ58|A0A553SQ58_NIACI3-deoxy-7-phosphoheptulonatesynthaseOS=NialliacirculansOX=1397GN=aroFPE=4SV=1	tr|A0A553SQ58|A0A553SQ58_NIACI3-deoxy-7-phosphoheptulonatesynthaseOS=NialliacirculansOX=1397GN=aroFPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	605.31005859375	2	605.305872	1208.59719	1.9021	0.0011514	-4.09	-0.0024757	-2.1879	-0.0013243	605.3040913716757	122.73	0.73768	122.73	122.45	123.18	0					34	15	4	0	0	0	0.16562	1	14131	14131		82.241	18.033	1	1212500			64189	34121	52959	53008	70525	70525		751			0.0012367151452963299
YDSGHGMM	8	Unmodified	_YDSGHGMM_					0	0	0			REV__nc|ENSG00000196419|P12956-2|XRCC6	REV__nc|ENSG00000196419|P12956-2|XRCC6	MULTI-MSMS	OvCa9_classI_Rep3	3	449.16400146484375	2	449.165113	896.315673	2.4004	0.0010782	1.3275	0.00059626	3.7279	0.0016744	449.1655388793463	55.693	2.0971	52.521	51.587	53.684	-3.1715					82	73	2	0	0	0	0.75915	1	1539	1539		20.482	0	1	14713	+		64190	22824	52960	53009	70526	70526					-0.13663202116640605
YDSIVLFIFE	10	Unmodified	_YDSIVLFIFE_					0	0	0		tr|A0A553SQH1|A0A553SQH1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07705PE=4SV=1	tr|A0A553SQH1|A0A553SQH1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07705PE=4SV=1	tr|A0A553SQH1|A0A553SQH1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07705PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	623.326904296875	2	623.323722	1244.63289	0.96884	0.0006039	2.0773	0.0012948	3.0461	0.0018987	623.3248884022844	143.15	1.2246	143.15	142.73	143.96	0					54	24	3	0	0	0	0.59703	1	16749	16749		42.396	2.338	1	392820			64191	34162	52961	53010	70527	70527					0.020360322431542954
YDTLPYRLF	9	Unmodified	_YDTLPYRLF_					0	0	0			REV__ENSG00000244242|ENST00000340134|IFITM10	REV__ENSG00000244242|ENST00000340134|IFITM10	MULTI-SECPEP	OvCa9_classI_Rep4_	4	594.26416015625	2	594.308406	1186.60226	-0.0091912	-5.4624E-06	-0.83695	-0.0004974	-0.84614	-0.00050287	594.3071491336938	99.089	0.83042	96.764	96.433	97.263	-2.3253					32	15	3	0	0	0	0.027441	1	8855	8855		55.504	18.345	1	38991	+		64192	23475	52962	53011	70528	70528					0.016422986487896196
YDTLPYRLF	9	Unmodified	_YDTLPYRLF_					0	0	0			REV__ENSG00000244242|ENST00000340134|IFITM10	REV__ENSG00000244242|ENST00000340134|IFITM10	MULTI-MATCH	OvCa9_classI_Rep2	2		2	594.308406	1186.60226	-0.70402	-0.00041841	3.0524	0.0018141	2.3484	0.0013957	594.3103546179559	97.872	0.83162	96.913	96.711	97.542	-0.95857	0.021684	0.00090079	NaN	55.504	24	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23105	+		64193	23475	52962	53011							0.016422986487896196
YDTYLLLI	8	Unmodified	_YDTYLLLI_					0	0	0			REV__ENST00000343028.8_3_12:27133503-27135716:-|nuORF	REV__ENST00000343028.8_3_12:27133503-27135716:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.7646484375	2	507.281326	1012.5481	-1.7891	-0.00090758	2.4636	0.0012498	0.67451	0.00034217	507.2820521324584	119.24	1.2487	117.89	117.42	118.67	-1.3444					42	23	3	0	0	0	0.028476	1	11195	11195		20.482	0	1	30532	+		64194	24662	52963	53012	70529	70529					0.04232706497248273
YDVMSFFLK	9	Unmodified	_YDVMSFFLK_					0	0	0			REV__ENST00000509177.1_1_8:15480615-15508356:+|nuORF	REV__ENST00000509177.1_1_8:15480615-15508356:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	575.2843017578125	2	575.286085	1148.55762	-0.15163	-8.723E-05	-1.9626	-0.0011291	-2.1143	-0.0012163	575.2849239233129	31.931	0.94222	31.931	31.757	32.7	0					50	18	5	0	0	0	0.51865	1	1376	1376		40.778	0.71999	1	1942600	+		64195	17675	52964	53013	70530	70530					-0.010718484888911917
YDVSPNLTL	9	Unmodified	_YDVSPNLTL_					0	0	0			REV__tr|A0A553SLW8|A0A553SLW8_NIACITagatose-6-phosphatekinaseOS=NialliacirculansOX=1397GN=pfkBPE=3SV=1	REV__tr|A0A553SLW8|A0A553SLW8_NIACITagatose-6-phosphatekinaseOS=NialliacirculansOX=1397GN=pfkBPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	511.26568603515625	2	511.263665	1020.51278	1.099	0.00056186	0.86312	0.00044128	1.9621	0.0010031	511.2639515577642	132.53	2.1106	132.53	132.13	134.24	0					106	44	5	0	0	0	0.16562	1	15380	15380		82.241	0	1	2175700	+		64196	30272	52965	53014	70531	70531					0.003340439694284214
YDVTMPKV	8	Unmodified	_YDVTMPKV_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant;AHNAK|p.P895Cfs*7|1|0.12|ENSG00000124942|chr11:62531725-62531735|CCACTTCTGGG/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep4_	4	476.7450866699219	2	476.744053	951.473554	-0.094452	-4.5029E-05	0.004698	2.2398E-06	-0.089754	-4.279E-05	476.7439548735161	91.483	1.3717	88.94	88.501	89.873	-2.5425					64	26	4	0	0	0	0.53252	2	7904	7904;7916		74.255	18.751	1	391150			64197	3687	52966	53015	70532;70533	70532					-0.004123795857822188
YDVTMPKV	8	Unmodified	_YDVTMPKV_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant;AHNAK|p.P895Cfs*7|1|0.12|ENSG00000124942|chr11:62531725-62531735|CCACTTCTGGG/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MATCH	OvCa9_classI_Rep2	2		2	476.744053	951.473554	1.5266	0.00072778	-1.4645	-0.00069817	0.062112	2.9611E-05	476.74326221795576	90.372	1.5751	89.07	88.631	90.206	-1.302	0.06594	-0.00080676	NaN	74.255	65	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	245660			64198	3687	52966	53015							-0.004123795857822188
YDVTMPKV	8	Unmodified	_YDVTMPKV_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant;AHNAK|p.P895Cfs*7|1|0.12|ENSG00000124942|chr11:62531725-62531735|CCACTTCTGGG/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MATCH	OvCa9_classI_Rep3	3		2	476.744053	951.473554	-0.03223	-1.5365E-05	-0.039684	-1.8919E-05	-0.071914	-3.4285E-05	476.7439203269112	91.028	1.4694	89.003	88.571	90.04	-2.025	-0.0017382	0.00055174	NaN	74.255	62	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	411380			64199	3687	52966	53015							-0.004123795857822188
YDVTVPKL	8	Unmodified	_YDVTVPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant;AHNAK|p.P895Cfs*7|1|0.12|ENSG00000124942|chr11:62531725-62531735|CCACTTCTGGG/-|frameshift_variant;AHNAK|p.P767Cfs*7|1|0.15|ENSG00000124942|chr11:62532109-62532119|CCACTTCTGGG/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep3	3	467.7664489746094	2	467.765843	933.517133	-0.079068	-3.6985E-05	0.18402	8.6079E-05	0.10495	4.9093E-05	467.7657890598065	99.133	1.283	97.448	97.061	98.344	-1.685					56	24	3	0	0	0	0.38806	1	6656	6656		90.37	8.1293	1	467290			64200	3687	52967	53016	70534	70534					0.04771553183002197
YDVTVPKL	8	Unmodified	_YDVTVPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant;AHNAK|p.P895Cfs*7|1|0.12|ENSG00000124942|chr11:62531725-62531735|CCACTTCTGGG/-|frameshift_variant;AHNAK|p.P767Cfs*7|1|0.15|ENSG00000124942|chr11:62532109-62532119|CCACTTCTGGG/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.76605224609375	2	467.765843	933.517133	-0.58174	-0.00027212	0.49706	0.00023251	-0.084673	-3.9607E-05	467.7659648439059	99.629	1.7424	97.304	96.899	98.641	-2.3253					67	33	3	0	0	0	0.60899	1	8880	8880		62.107	7.3311	1	401600			64201	3687	52967	53016	70535	70535					0.04771553183002197
YDVTVPKL	8	Unmodified	_YDVTVPKL_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant;AHNAK|p.M1129Ffs*25|1|0.05|ENSG00000124942|chr11:62531032-62531033|-/TAAA|frameshift_variant;AHNAK|p.P895Cfs*7|1|0.12|ENSG00000124942|chr11:62531725-62531735|CCACTTCTGGG/-|frameshift_variant;AHNAK|p.P767Cfs*7|1|0.15|ENSG00000124942|chr11:62532109-62532119|CCACTTCTGGG/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MATCH	OvCa9_classI_Rep2	2		2	467.765843	933.517133	-0.45691	-0.00021373	0.26829	0.00012549	-0.18863	-8.8233E-05	467.76581410927815	98.391	1.4326	97.498	97.072	98.504	-0.89306	0.080929	-6.9713E-05	NaN	90.37	64	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	298260			64202	3687	52967	53016							0.04771553183002197
YDVTVPKV	8	Unmodified	_YDVTVPKV_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep3	3	460.758544921875	2	460.758018	919.501483	-0.43874	-0.00020215	0.4874	0.00022457	0.048661	2.2421E-05	460.7580648567555	88.778	1.8436	86.647	86.214	88.057	-2.1309					85	36	4	0	0	0	0.31378	3	5420	5420;5426;5432		104.75	33.572	1	430570			64203	3687	52968	53017	70536;70537;70538	70536					0.03851266665958519
YDVTVPKV	8	Unmodified	_YDVTVPKV_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MSMS	OvCa9_classI_Rep4_	4	460.75885009765625	2	460.758018	919.501483	-0.58531	-0.00026969	0.46145	0.00021262	-0.12386	-5.7071E-05	460.75799528783784	89.166	1.4369	86.564	86.136	87.573	-2.6027					68	28	4	0	0	0	0.37357	3	7629	7629;7640;7652		93.195	21.609	1	435840			64204	3687	52968	53017	70539;70540;70541	70539					0.03851266665958519
YDVTVPKV	8	Unmodified	_YDVTVPKV_					0	0	0		ENSG00000124942|ENST00000378024|AHNAK;AHNAK|p.D5149Tfs*7|1|0.04|ENSG00000124942|chr11:62518972-62518972|C/-|frameshift_variant;AHNAK|p.K2299Sfs*23|1|0.04|ENSG00000124942|chr11:62527523-62527523|G/-|frameshift_variant;AHNAK|p.D1995Tfs*4|1|0.03|ENSG00000124942|chr11:62528434-62528434|C/-|frameshift_variant;AHNAK|p.D1993Efs*18|1|0.26|ENSG00000124942|chr11:62528419-62528438|CTTTCAGGTGTAAGTCCACA/-|frameshift_variant	ENSG00000124942|ENST00000378024|AHNAK	ENSG00000124942|ENST00000378024|AHNAK	MULTI-MATCH	OvCa9_classI_Rep2	2		2	460.758018	919.501483	1.7054	0.00078579	-1.742	-0.00080264	-0.036578	-1.6853E-05	460.757058081498	88.138	1.6207	86.77	86.203	87.823	-1.3676	0.10987	-0.0010206	NaN	104.75	80	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	240640			64205	3687	52968	53017							0.03851266665958519
YDVVTPKI	8	Unmodified	_YDVVTPKI_					0	0	0		ENSG00000181004|ENST00000314218|BBS12	ENSG00000181004|ENST00000314218|BBS12	ENSG00000181004|ENST00000314218|BBS12	MULTI-MSMS	OvCa9_classI_Rep3	3	467.7662353515625	2	467.765843	933.517133	-0.079068	-3.6985E-05	0.18402	8.6079E-05	0.10495	4.9093E-05	467.7657890598065	99.133	1.283	97.448	97.061	98.344	-1.685					56	24	3	0	0	0	0.53252	1	6650	6650		74.255	0	1	467290			64206	7910	52969	53018	70542	70542					0.04771553183002197
YDVVTPKI	8	Unmodified	_YDVVTPKI_					0	0	0		ENSG00000181004|ENST00000314218|BBS12	ENSG00000181004|ENST00000314218|BBS12	ENSG00000181004|ENST00000314218|BBS12	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.765625	2	467.765843	933.517133	-0.58174	-0.00027212	0.49706	0.00023251	-0.084673	-3.9607E-05	467.7659648439059	99.629	1.7424	97.304	96.899	98.641	-2.3253					67	33	3	0	0	0	0.42649	2	8902	8890;8902		84.916	0	1	401600			64207	7910	52969	53018	70543;70544	70544					0.04771553183002197
YDYLAAWL	8	Unmodified	_YDYLAAWL_					0	0	0			REV__ENSG00000143674|ENST00000366624|MAP3K21	REV__ENSG00000143674|ENST00000366624|MAP3K21	MULTI-MSMS	OvCa99_classI_Rep5	1	507.7503967285156	2	507.750193	1013.48583	1.7841	0.0009059	-3.8556	-0.0019577	-2.0715	-0.0010518	507.748133197859	87.331	0.90847	87.331	87.013	87.921	0					43	21	3	0	0	0	0.64377	1	9241	9241		54.765	4.7401	1	1629100	+		64208	19861	52970	53019	70545	70545					-0.020370198510931914
YDYLALKTL	9	Unmodified	_YDYLALKTL_					0	0	0		ENST00000508991.1_1_5:96512756-96518871:-|nuORF;nc|ENSG00000058729|Q9BVS4-2|RIOK2;ENSG00000058729|ENST00000283109|RIOK2	ENST00000508991.1_1_5:96512756-96518871:-|nuORF	ENST00000508991.1_1_5:96512756-96518871:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	550.3028564453125	2	550.305332	1098.59611	-1.3685	-0.00075312	-2.6777	-0.0014735	-4.0462	-0.0022267	550.3038190242007	62.985	2.202	60.24	59.695	61.897	-2.7444					104	41	4	0	0	0	0.068524	1	4768	4768		108.09	0	1	3245100			64209	1248	52971	53020	70546	70546					0.05075780417291753
YDYNGFREG	9	Unmodified	_YDYNGFREG_					0	0	0			REV__tr|A0A7D6VT52|A0A7D6VT52_9CLOTDUF4241domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06705PE=4SV=1	REV__tr|A0A7D6VT52|A0A7D6VT52_9CLOTDUF4241domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_06705PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.8065795898438	2	560.738345	1119.46214	2.1992	0.0012332	2.5206	0.0014134	4.7198	0.0026466	560.740201768714	127.07	0.18317	127.07	126.91	127.1	0					6	3	2	0	0	0	0.027462	1	14704	14704		30.504	1.3541	1	70307	+		64210	31572	52972	53021	70547	70547					-0.09281485355586483
YEAAKLLNV	9	Unmodified	_YEAAKLLNV_					0	0	0		ENST00000460575.1_1_1:68151090-68151810:+|nuORF;ENSG00000116717|ENST00000370986|GADD45A	ENST00000460575.1_1_1:68151090-68151810:+|nuORF	ENST00000460575.1_1_1:68151090-68151810:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	510.7911071777344	2	510.78985	1019.56515	0.72665	0.00037117	1.2412	0.00063398	1.9678	0.0010051	510.7904193011374	141.41	2.0384	141.41	141.03	143.07	0					83	40	4	0	0	0	0.48047	1	16578	16578		44.377	6.5657	1	2508200			64211	3201	52973	53022	70548	70548					0.056146271030456774
YEAEIPYLD	9	Unmodified	_YEAEIPYLD_					0	0	0		tr|A0A553ST61|A0A553ST61_NIACIFMNdependentNADH:quinoneoxidoreductaseOS=NialliacirculansOX=1397GN=azoRPE=3SV=1	tr|A0A553ST61|A0A553ST61_NIACIFMNdependentNADH:quinoneoxidoreductaseOS=NialliacirculansOX=1397GN=azoRPE=3SV=1	tr|A0A553ST61|A0A553ST61_NIACIFMNdependentNADH:quinoneoxidoreductaseOS=NialliacirculansOX=1397GN=azoRPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	557.7467041015625	2	556.760955	1111.50736	3.5926	0.0020002	-4.3128	-0.0024012	-0.72019	-0.00040097	556.7585048267701	97.757	0.55663	97.757	97.438	97.995	0					20	12	2	0	0	0	0.027462	1	10778	10778		30.504	14.862	1	478360			64212	34459	52974	53023	70549	70549					-0.043936796130537914
YEAFVRHIL	9	Unmodified	_YEAFVRHIL_					0	0	0		ENSG00000092841|ENST00000550697|MYL6;ENST00000412707.1_1_17:69617202-69617574:+|nuORF	ENSG00000092841|ENST00000550697|MYL6;ENST00000412707.1_1_17:69617202-69617574:+|nuORF	ENSG00000092841|ENST00000550697|MYL6	MULTI-SECPEP	OvCa99_classI_Rep5	1	573.8367919921875	2	574.316566	1146.61858	1.8805	0.00108	0.54734	0.00031434	2.4279	0.0013944	574.3167907281286	85.677	0.61142	85.677	85.462	86.073	0					32	14	3	0	0	0	0.027402	1	9006	9006		87.754	39.839	1	1238500			64213	1901;11551	52975	53024	70550	70550					0.051134246055880794
YEAIHHEDL	9	Unmodified	_YEAIHHEDL_					0	0	0		nc|ENSG00000101336|P08631-3|HCK;nc|ENSG00000101336|P08631-2|HCK;nc|ENSG00000101336|P08631-4|HCK;ENSG00000101336|ENST00000375852|HCK	nc|ENSG00000101336|P08631-3|HCK	nc|ENSG00000101336|P08631-3|HCK	MULTI-MSMS	OvCa99_classI_Rep5	1	563.7628173828125	2	563.76182	1125.50909	-0.18145	-0.00010229	0.03315	1.8689E-05	-0.1483	-8.3606E-05	563.7617512025179	51.85	0.98265	51.85	51.627	52.61	0					54	22	4	0	0	0	0.12365	1	4052	4052		90.777	29.805	1	4072400			64214	2167	52976	53025	70551	70551					-0.04864625804430034
YEALLNIKV	9	Unmodified	_YEALLNIKV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF;ENST00000397031.2_1_2:182825941-182826409:-|nuORF	ENSG00000111057|ENST00000388835|KRT18;ENST00000397031.2_1_2:182825941-182826409:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa99_classI_Rep5	1	531.8147583007812	2	531.813325	1061.6121	2.0357	0.0010826	-0.86487	-0.00045995	1.1709	0.00062268	531.8129380732158	112.85	1.2447	112.85	112.2	113.45	0					62	27	4	0	0	0	0.046778	3	12845	12845;12869;12876		120.87	41.156	1	2379700			64215	2808;11336	52977	53026	70552;70553;70554	70552					0.08375486654176711
YEALLNIKV	9	Unmodified	_YEALLNIKV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF;ENST00000397031.2_1_2:182825941-182826409:-|nuORF	ENSG00000111057|ENST00000388835|KRT18;ENST00000397031.2_1_2:182825941-182826409:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8135375976562	2	531.813325	1061.6121	-0.39245	-0.00020871	-0.5038	-0.00026793	-0.89626	-0.00047664	531.813178072344	112.13	2.6147	112.01	111.59	114.2	-0.12174					128	52	4	0	0	0	0.033166	12	10594	10590;10594;10599;10605;10611;10617;10623;10630;10637;10643;10649;10662		132.76	50.007	1	1017100			64216	2808;11336	52977	53026	70555;70556;70557;70558;70559;70560;70561;70562;70563;70564;70565;70566	70556					0.08375486654176711
YEALLNIKV	9	Unmodified	_YEALLNIKV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF;ENST00000397031.2_1_2:182825941-182826409:-|nuORF	ENSG00000111057|ENST00000388835|KRT18;ENST00000397031.2_1_2:182825941-182826409:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8140258789062	2	531.813325	1061.6121	1.5132	0.00080475	-2.0383	-0.001084	-0.52513	-0.00027927	531.8123789738848	112.96	3.2018	111.88	111.51	114.72	-1.0753					140	63	4	0	0	0	0.013371	13	8290	8261;8266;8272;8278;8284;8290;8297;8303;8310;8317;8323;8328;8334		158.07	53.328	1	1537700			64217	2808;11336	52977	53026	70567;70568;70569;70570;70571;70572;70573;70574;70575;70576;70577;70578;70579	70572					0.08375486654176711
YEALLNIKV	9	Unmodified	_YEALLNIKV_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53344429-53346127:+|nuORF;ENST00000534205.1_1_11:35881882-35882566:-|nuORF;ENST00000397031.2_1_2:182825941-182826409:-|nuORF	ENSG00000111057|ENST00000388835|KRT18;ENST00000397031.2_1_2:182825941-182826409:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.8125610351562	2	531.813325	1061.6121	-0.52495	-0.00027917	-0.51603	-0.00027443	-1.041	-0.0005536	531.8131833127321	113.27	2.6621	111.83	111.46	114.12	-1.4461					143	52	4	0	0	0	0.013371	8	10496	10475;10484;10496;10508;10521;10533;10547;10556		158.07	62.915	1	1933700			64218	2808;11336	52977	53026	70580;70581;70582;70583;70584;70585;70586;70587	70582					0.08375486654176711
YEALPELKL	9	Unmodified	_YEALPELKL_					0	0	0		nc|ENSG00000100504|P06737-2|PYGL;ENSG00000100504|ENST00000216392|PYGL;ENST00000532107.2_1_14:51374946-51378571:-|nuORF	nc|ENSG00000100504|P06737-2|PYGL	nc|ENSG00000100504|P06737-2|PYGL	MULTI-MSMS	OvCa99_classI_Rep5	1	538.3070678710938	2	538.305332	1074.59611	1.0411	0.00056045	1.1775	0.00063385	2.2186	0.0011943	538.3056871894617	115.03	0.60501	115.03	114.74	115.35	0					23	12	3	0	0	0	0.1243	1	13146	13146		90.601	16.346	1	179520			64219	2078	52978	53027	70588	70588					0.0617978041727838
YEAVREVL	8	Unmodified	_YEAVREVL_					0	0	0		ENSG00000198755|ENST00000322203|RPL10A;ENST00000464112.5_1_6:35436546-35438524:+|nuORF;ENST00000490335.4_1_6:35436211-35436651:+|nuORF;ENST00000467020.5_1_6:35436211-35436817:+|nuORF;ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENSG00000198755|ENST00000322203|RPL10A;ENST00000472730.1_1_3:61728131-61728755:-|nuORF	ENSG00000198755|ENST00000322203|RPL10A	MULTI-MSMS	OvCa9_classI_Rep4_	4	489.767822265625	2	489.766374	977.518196	-0.14399	-7.0521E-05	0.034797	1.7042E-05	-0.10919	-5.3479E-05	489.7661500094305	79.48	1.2553	76.729	76.418	77.673	-2.7514					68	25	4	0	0	0	0.69491	1	6461	6461		44.377	1.9027	1	360920			64220	8867;12397	52979	53028	70589	70589					0.028537675519032746
YEDATKITV	9	Unmodified	_YEDATKITV_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MSMS	OvCa99_classI_Rep5	1	520.2696533203125	2	520.268947	1038.52334	-0.39473	-0.00020537	0.71582	0.00037242	0.32109	0.00016705	520.2692093586112	71.727	0.94205	71.727	71.349	72.291	0					50	22	3	0	0	0	0.056671	1	6943	6943		114.89	49.429	1	5509000			64221	4134	52980	53029	70590	70590					0.005620266238565819
YEDATKITV	9	Unmodified	_YEDATKITV_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	520.268947	1038.52334	-0.12094	-6.2921E-05	0.076231	3.966E-05	-0.044708	-2.326E-05	520.2686205237429	73.882	0.946	71.752	71.272	72.218	-2.1295	0.052975	-0.00050518	NaN	114.89	24	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20366			64222	4134	52980	53029							0.005620266238565819
YEDATKITV	9	Unmodified	_YEDATKITV_					0	0	0		ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	ENSG00000132383|ENST00000254719|RPA1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	520.268947	1038.52334	-0.46068	-0.00023968	0.41636	0.00021662	-0.044319	-2.3058E-05	520.2690721949525	74.85	0.77208	71.619	71.337	72.109	-3.2308	-0.080613	-0.00015127	NaN	114.89	27	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121460			64223	4134	52980	53029							0.005620266238565819
YEDIAVKL	8	Unmodified	_YEDIAVKL_					0	0	0		nc|ENSG00000147162|O15294-2|OGT;nc|ENSG00000147162|O15294-3|OGT;ENSG00000147162|ENST00000373719|OGT;nc|ENSG00000147162|O15294-4|OGT	nc|ENSG00000147162|O15294-2|OGT	nc|ENSG00000147162|O15294-2|OGT	MSMS	OvCa99_classI_Rep5	1	475.76495361328125	2	475.7633	949.512048	NaN	NaN	NaN	NaN	NaN	NaN	NaN	91.662	1	91.662	91.162	92.162	0								0	0	0	0.1002	1	9881	9881		113.41	33.961	1				64224	5337	52981	53030	70591	70591					0.03527249320381998
YEDQTKPVL	9	Unmodified	_YEDQTKPVL_					0	0	0		nc|ENSG00000147853|Q9UIJ7-2|AK3;nc|ENSG00000147853|Q9UIJ7-3|AK3;ENSG00000147853|ENST00000381809|AK3	nc|ENSG00000147853|Q9UIJ7-2|AK3	nc|ENSG00000147853|Q9UIJ7-2|AK3	MULTI-MSMS	OvCa99_classI_Rep5	1	546.7836303710938	2	546.782222	1091.54989	0.30457	0.00016653	-0.25057	-0.00013701	0.054004	2.9528E-05	546.7818797447145	63.213	0.87812	63.213	62.976	63.854	0					74	21	6	0	0	0	0.051592	1	5669	5669		117.81	19.182	1	5798000			64225	5377	52982	53031	70592	70592					0.007777155151870829
YEDQTKPVL	9	Unmodified	_YEDQTKPVL_					0	0	0		nc|ENSG00000147853|Q9UIJ7-2|AK3;nc|ENSG00000147853|Q9UIJ7-3|AK3;ENSG00000147853|ENST00000381809|AK3	nc|ENSG00000147853|Q9UIJ7-2|AK3	nc|ENSG00000147853|Q9UIJ7-2|AK3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	546.782222	1091.54989	0.66991	0.0003663	-0.82114	-0.00044898	-0.15122	-8.2686E-05	546.781612329157	66.255	1.6865	63.56	63.071	64.758	-2.6958	0.18529	-0.00049971	NaN	117.81	45	33	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	80346			64226	5377	52982	53031							0.007777155151870829
YEDQTKPVL	9	Unmodified	_YEDQTKPVL_					0	0	0		nc|ENSG00000147853|Q9UIJ7-2|AK3;nc|ENSG00000147853|Q9UIJ7-3|AK3;ENSG00000147853|ENST00000381809|AK3	nc|ENSG00000147853|Q9UIJ7-2|AK3	nc|ENSG00000147853|Q9UIJ7-2|AK3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	546.782222	1091.54989	-0.046804	-2.5591E-05	-0.14609	-7.988E-05	-0.19289	-0.00010547	546.782102151363	66.841	1.8168	63.35	63.148	64.965	-3.4902	-0.023988	0.00023849	NaN	117.81	53	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	366270			64227	5377	52982	53031							0.007777155151870829
YEEAKRLAW	9	Unmodified	_YEEAKRLAW_					0	0	0			REV__ENST00000563306.5_1_16:46723682-46729618:+|nuORF	REV__ENST00000563306.5_1_16:46723682-46729618:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.2734375	2	583.303655	1164.59276	2.7032	0.0015768	-1.6149	-0.00094198	1.0883	0.0006348	583.3024498224287	97.825	0.42863	97.825	97.566	97.995	0					11	9	2	0	0	0	0.027462	1	10730	10730		42.396	15.703	1	126080	+		64228	27657	52983	53032	70593	70593					0.01704530363304002
YEEAMKEVL	9	Unmodified	_YEEAMKEVL_					0	0	0		nc|ENSG00000039560|Q9P0K7-4|RAI14;nc|ENSG00000039560|Q9P0K7-3|RAI14;ENSG00000039560|ENST00000265109|RAI14;nc|ENSG00000039560|Q9P0K7-2|RAI14	nc|ENSG00000039560|Q9P0K7-4|RAI14	nc|ENSG00000039560|Q9P0K7-4|RAI14	MULTI-MSMS	OvCa99_classI_Rep5	1	556.2722778320312	2	556.270632	1110.52671	1.1068	0.00061566	0.75519	0.00042009	1.862	0.0010357	556.2708235037445	81.456	0.93536	81.456	81.206	82.141	0					48	22	3	0	0	0	0.13326	2	8384	8384;8414		88.177	34.825	1	4141000			64229	1107	52984	53033	70594;70595	70594					-0.02413046593778745
YEEAMKEVL	9	Unmodified	_YEEAMKEVL_					0	0	0		nc|ENSG00000039560|Q9P0K7-4|RAI14;nc|ENSG00000039560|Q9P0K7-3|RAI14;ENSG00000039560|ENST00000265109|RAI14;nc|ENSG00000039560|Q9P0K7-2|RAI14	nc|ENSG00000039560|Q9P0K7-4|RAI14	nc|ENSG00000039560|Q9P0K7-4|RAI14	MULTI-MATCH	OvCa9_classI_Rep3	3		2	556.270632	1110.52671	-1.4375	-0.00079962	0.81912	0.00045565	-0.61835	-0.00034397	556.773116103285	83.749	0.9283	81.488	80.816	81.745	-2.261	0.015621	6.0997E-05	NaN	88.177	30	19	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26945			64230	1107	52984	53033							-0.02413046593778745
YEEDAHITF	9	Unmodified	_YEEDAHITF_					0	0	0		nc|ENSG00000187627|P0DJD0|RGPD1;ENSG00000187627|ENST00000641458|RGPD1;ENSG00000185304|ENST00000398146|RGPD2;ENSG00000183054|ENST00000329516|RGPD6;ENSG00000169629|ENST00000302558|RGPD8;ENSG00000015568|ENST00000016946|RGPD5;ENSG00000153201|ENST00000283195|RANBP2;nc|ENSG00000183054|Q99666-2|RGPD5;RGPD8|p.M1097Sfs*2|1|0.29|ENSG00000169629|chr2:112389655-112389655|A/-|frameshift_variant;RANBP2|p.A655P|1|0.27|ENSG00000153201|chr2:108753471-108753471|G/C|missense_variant	nc|ENSG00000187627|P0DJD0|RGPD1	nc|ENSG00000187627|P0DJD0|RGPD1	MULTI-MSMS	OvCa99_classI_Rep5	1	562.7522583007812	2	562.748379	1123.4822	3.1824	0.0017909	-0.70593	-0.00039726	2.4765	0.0013937	562.747863113969	86.479	0.69933	86.479	86.231	86.931	0					43	16	3	0	0	0	0.062324	1	9115	9115		111.65	23.894	1	3012000			64231	1004	52985	53034	70596	70596					-0.07459734415624553
YEEDSKETL	9	Unmodified	_YEEDSKETL_					0	0	0		ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	ENSG00000038219|ENST00000040738|BOD1L1	MULTI-MSMS	OvCa99_classI_Rep5	1	557.2528686523438	2	557.250951	1112.48735	-0.55454	-0.00030902	-0.005204	-2.9E-06	-0.55975	-0.00031192	557.250873662112	49.701	1.0465	49.701	49.462	50.509	0					43	23	4	0	0	0	0.056671	1	3725	3725		114.89	45.267	1	2396700			64232	1094	52986	53035	70597	70597					-0.06439475343631784
YEEELREL	8	Unmodified	_YEEELREL_					0	0	0		ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	MULTI-MSMS	OvCa9_classI_Rep2	2	540.7634887695312	2	540.764029	1079.5135	-0.95881	-0.00051849	0.60534	0.00032734	-0.35347	-0.00019115	540.7642791254573	77.49	1.7025	75.701	75.103	76.805	-1.7894					108	32	4	0	0	0	0.041788	9	6461	6438;6443;6449;6455;6461;6467;6474;6480;6486		171.38	0	1	1661100			64233	7513	52987	53036	70598;70599;70600;70601;70602;70603;70604;70605;70606	70602					-0.02307161381509104
YEEELREL	8	Unmodified	_YEEELREL_					0	0	0		ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.7650146484375	2	540.764029	1079.5135	-0.63302	-0.00034232	-0.14947	-8.0827E-05	-0.78249	-0.00042314	540.7639329631705	78.346	1.4239	75.53	75.214	76.638	-2.8165					104	29	4	0	0	0	0.13946	10	6296	6296;6307;6319;6332;6345;6358;6370;6387;6401;6413		134.81	0	1	6790700			64234	7513	52987	53036	70607;70608;70609;70610;70611;70612;70613;70614;70615;70616	70607					-0.02307161381509104
YEEELREL	8	Unmodified	_YEEELREL_					0	0	0		ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	ENSG00000175084|ENST00000373960|DES	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.7656860351562	2	540.764029	1079.5135	-1.1746	-0.0006352	1.9617	0.0010608	0.78711	0.00042564	540.764434696453	79.693	3.1481	76.941	76.37	79.518	-2.7514					177	64	7	0	0	0	0.64371	2	6484	6484;6494		54.776	0	1	600170			64235	7513	52987	53036	70617;70618	70617					-0.02307161381509104
YEEEVKKTL	9	Unmodified	_YEEEVKKTL_					0	0	0		nc|ENSG00000093144|Q9NTX5-6|ECHDC1;ENSG00000093144|ENST00000454859|ECHDC1;nc|ENSG00000093144|Q9NTX5|ECHDC1;ENST00000368287.1_1_6:127648134-127664493:-|nuORF;nc|ENSG00000093144|Q9NTX5-5|ECHDC1	nc|ENSG00000093144|Q9NTX5-6|ECHDC1	nc|ENSG00000093144|Q9NTX5-6|ECHDC1	MULTI-MSMS	OvCa99_classI_Rep5	1	569.80419921875	2	569.803154	1137.59175	-0.28691	-0.00016348	0.092896	5.2932E-05	-0.19401	-0.00011055	569.8028987559313	47.575	0.69199	47.575	47.336	48.028	0					35	15	4	0	0	0	0.056671	1	3438	3438		114.89	50.687	1	1155800			64236	1908	52988	53037	70619	70619					0.028462712037480742
YEEGINIHL	9	Unmodified	_YEEGINIHL_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MSMS	OvCa99_classI_Rep5	1	544.27294921875	2	544.274564	1086.53457	2.0207	0.0010998	0.79729	0.00043394	2.818	0.0015338	544.2747843150872	99.902	0.49711	99.902	99.652	100.15	0					21	11	2	0	0	0	0.059253	1	11064	11064		113.41	28.496	1	1416700			64237	7583	52989	53038	70620	70620					-0.005231512820046191
YEEGINIHL	9	Unmodified	_YEEGINIHL_					0	0	0		ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	ENSG00000176102|ENST00000323959|CSTF3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	544.274564	1086.53457	-1.2664	-0.00068925	-0.50035	-0.00027233	-1.7667	-0.00096158	544.2744075855917	100.33	0.29703	99.503	99.311	99.608	-0.83051	-0.1998	-0.0010662	NaN	113.41	7	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22280			64238	7583	52989	53038							-0.005231512820046191
YEEILNTKL	9	Unmodified	_YEEILNTKL_					0	0	0		ENSG00000135334|ENST00000257787|AKIRIN2	ENSG00000135334|ENST00000257787|AKIRIN2	ENSG00000135334|ENST00000257787|AKIRIN2	MULTI-MSMS	OvCa99_classI_Rep5	1	561.8073120117188	2	561.805697	1121.59684	3.1825	0.0017879	-0.07807	-4.386E-05	3.1044	0.0017441	561.8056796345993	94.172	1.361	94.172	93.923	95.284	0					85	31	4	0	0	0	0.011355	2	10252	10222;10252		164.46	36.993	1	8160800			64239	4367	52990	53039	70621;70622	70622					0.04090575066334168
YEEKPLWLV	9	Unmodified	_YEEKPLWLV_					0	0	0		nc|ENSG00000134193|Q9BYZ8-2|REG4	nc|ENSG00000134193|Q9BYZ8-2|REG4	nc|ENSG00000134193|Q9BYZ8-2|REG4	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.7734375	2	588.818607	1175.62266	-0.54364	-0.00032011	-2.4232	-0.0014268	-2.9669	-0.0017469	588.8166497955214	69.572	1.7199	69.572	68.649	70.369	0					56	41	2	0	0	0	0.027462	1	6542	6542		45.952	21.433	1	1182400			64240	15026	52991	53040	70623	70623					0.041874693085901527
YEELGRKL	8	Unmodified	_YEELGRKL_					0	0	0			REV__tr|A0A553SG22|A0A553SG22_NIACIPrkAfamilyserineproteinkinaseOS=NialliacirculansOX=1397GN=CEQ21_09965PE=4SV=1	REV__tr|A0A553SG22|A0A553SG22_NIACIPrkAfamilyserineproteinkinaseOS=NialliacirculansOX=1397GN=CEQ21_09965PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	504.2802734375	2	504.279649	1006.54475	NaN	NaN	NaN	NaN	NaN	NaN	NaN	46.194	1	46.194	45.694	46.694	0								0	0	0	0.30129	1	3245	3245		82.241	5.3939	1		+		64241	29651	52992	53041	70624	70624					0.04173456443231771
YEELGRKL	8	Unmodified	_YEELGRKL_					0	0	0			REV__tr|A0A553SG22|A0A553SG22_NIACIPrkAfamilyserineproteinkinaseOS=NialliacirculansOX=1397GN=CEQ21_09965PE=4SV=1	REV__tr|A0A553SG22|A0A553SG22_NIACIPrkAfamilyserineproteinkinaseOS=NialliacirculansOX=1397GN=CEQ21_09965PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	504.2796936035156	2	504.279649	1006.54475	-1.6431	-0.00082856	1.1851	0.0005976	-0.458	-0.00023096	504.28013580529404	50.546	2.428	47.752	47.331	49.759	-2.794					113	47	4	0	0	0	0.42649	3	3281	3281;3292;3319		84.916	7.2187	1	790080	+		64242	29651	52992	53041	70625;70626;70627	70625					0.04173456443231771
YEELVRMVL	9	Unmodified	_YEELVRMVL_					0	0	0		nc|ENSG00000092841|P60660-2|MYL6	nc|ENSG00000092841|P60660-2|MYL6	nc|ENSG00000092841|P60660-2|MYL6	MULTI-MSMS	OvCa99_classI_Rep5	1	576.3142700195312	2	576.310092	1150.60563	1.0803	0.00062259	1.4354	0.00082723	2.5157	0.0014498	576.310699445455	119.35	1.2024	119.35	119.1	120.3	0					73	28	3	0	0	0	0.2077	2	13698	13698;13722		75.043	8.7966	1	2923600			64243	14919	52993	53042	70628;70629	70628					0.036352254311623255
YEELVRMVL	9	Unmodified	_YEELVRMVL_					0	0	0		nc|ENSG00000092841|P60660-2|MYL6	nc|ENSG00000092841|P60660-2|MYL6	nc|ENSG00000092841|P60660-2|MYL6	MULTI-MSMS	OvCa9_classI_Rep3	3	576.3107299804688	2	576.310092	1150.60563	0.39912	0.00023002	-0.70721	-0.00040757	-0.30809	-0.00017756	576.3094121170471	120.26	1.4056	119.24	118.92	120.33	-1.0271					57	27	3	0	0	0	0.22621	2	9163	9157;9163		71.877	32.625	1	136840			64244	14919	52993	53042	70630;70631	70631					0.036352254311623255
YEELVRMVL	9	Unmodified	_YEELVRMVL_					0	0	0		nc|ENSG00000092841|P60660-2|MYL6	nc|ENSG00000092841|P60660-2|MYL6	nc|ENSG00000092841|P60660-2|MYL6	MULTI-MSMS	OvCa9_classI_Rep4_	4	576.3101196289062	2	576.310092	1150.60563	-1.2777	-0.00073638	1.1968	0.00068974	-0.080927	-4.6639E-05	576.310597997184	120.56	2.7071	119.21	118.77	121.48	-1.3444					90	52	4	0	0	0	0.2422	3	11343	11331;11343;11358		69.628	21.97	1	173340			64245	14919	52993	53042	70632;70633;70634	70633					0.036352254311623255
YEELVRMVL	9	Unmodified	_YEELVRMVL_					0	0	0		nc|ENSG00000092841|P60660-2|MYL6	nc|ENSG00000092841|P60660-2|MYL6	nc|ENSG00000092841|P60660-2|MYL6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	576.310092	1150.60563	-2.2282	-0.0012841	1.8173	0.0010473	-0.41094	-0.00023683	576.3108495909978	119.39	1.5768	119.21	118.91	120.48	-0.17137	-0.039184	0.0010456	NaN	75.043	56	31	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	82811			64246	14919	52993	53042							0.036352254311623255
YEELVRMVL	9	Oxidation (M)	_YEELVRM(Oxidation (M))VL_		YEELVRM(1)VL		YEELVRM(85)VL	0	0	1		nc|ENSG00000092841|P60660-2|MYL6	nc|ENSG00000092841|P60660-2|MYL6	nc|ENSG00000092841|P60660-2|MYL6	MULTI-MSMS	OvCa9_classI_Rep2	2	584.3063354492188	2	584.307549	1166.60055	-1.1294	-0.00065991	0.58218	0.00034017	-0.54721	-0.00031974	584.3077482595431	100.35	3.8138	99.518	98.467	102.28	-0.83052					189	76	4	0	0	0	0.14855	6	9184	9162;9171;9184;9190;9196;9204		85.161	33.825	1	413450			64247	14919	52993	53043	70635;70636;70637;70638;70639;70640	70637		364			0.023909215685534946
YEELVRMVL	9	Oxidation (M)	_YEELVRM(Oxidation (M))VL_		YEELVRM(1)VL		YEELVRM(91)VL	0	0	1		nc|ENSG00000092841|P60660-2|MYL6	nc|ENSG00000092841|P60660-2|MYL6	nc|ENSG00000092841|P60660-2|MYL6	MULTI-MSMS	OvCa9_classI_Rep3	3	584.3089599609375	2	584.307549	1166.60055	-2.1344	-0.0012471	1.6839	0.00098392	-0.45047	-0.00026321	584.3083700265164	101.13	3.8	99.524	98.946	102.75	-1.6053					189	72	4	0	0	0	0.1243	6	6890	6872;6890;6893;6899;6906;6919		90.601	42.765	1	569190			64248	14919	52993	53043	70641;70642;70643;70644;70645;70646	70642		364			0.023909215685534946
YEELVRMVL	9	Oxidation (M)	_YEELVRM(Oxidation (M))VL_		YEELVRM(1)VL		YEELVRM(91)VL	0	0	1		nc|ENSG00000092841|P60660-2|MYL6	nc|ENSG00000092841|P60660-2|MYL6	nc|ENSG00000092841|P60660-2|MYL6	MULTI-MSMS	OvCa9_classI_Rep4_	4	584.308349609375	2	584.307549	1166.60055	-1.0505	-0.0006138	0.28403	0.00016596	-0.76643	-0.00044783	584.3075985445785	101.72	3.868	99.456	98.883	102.75	-2.2665					195	74	4	0	0	0	0.1243	6	9123	9099;9110;9123;9135;9146;9203		90.601	30.483	1	505160			64249	14919	52993	53043	70647;70648;70649;70650;70651;70652	70649		364			0.023909215685534946
YEENAKAEL	9	Unmodified	_YEENAKAEL_					0	0	0		ENSG00000125124|ENST00000245157|BBS2;BBS2|p.H435Qfs*50|1|0.17|ENSG00000125124|chr16:56500946-56500947|-/GGCATATGGAAAATTTATACATCTTGCCCTCCTC|frameshift_variant	ENSG00000125124|ENST00000245157|BBS2	ENSG00000125124|ENST00000245157|BBS2	MULTI-MSMS	OvCa99_classI_Rep5	1	533.7572631835938	2	533.756204	1065.49785	-0.35591	-0.00018997	-0.60933	-0.00032524	-0.96524	-0.0005152	533.7557923453933	54.195	1.0543	54.195	53.969	55.023	0					68	24	4	0	0	0	0.10421	2	4372	4344;4372		96.034	13.283	1	10363000			64250	3692	52994	53044	70653;70654	70654					-0.03227447898552782
YEENLKAEL	9	Unmodified	_YEENLKAEL_					0	0	0		ENSG00000181381|ENST00000682922|DDX60L;nc|ENSG00000181381|Q5H9U9-2|DDX60L;DDX60L|p.R1229Pfs*17|1|0.04|ENSG00000181381|chr4:168394589-168394590|-/GAAGAGTAAAGGGTTATGACCAG|frameshift_variant	ENSG00000181381|ENST00000682922|DDX60L;DDX60L|p.R1229Pfs*17|1|0.04|ENSG00000181381|chr4:168394589-168394590|-/GAAGAGTAAAGGGTTATGACCAG|frameshift_variant	DDX60L|p.R1229Pfs*17|1|0.04|ENSG00000181381|chr4:168394589-168394590|-/GAAGAGTAAAGGGTTATGACCAG|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	554.7810668945312	2	554.779679	1107.5448	1.9677	0.0010917	-0.47646	-0.00026433	1.4913	0.00082732	554.7792629517769	77.698	0.67237	77.698	77.461	78.134	0					35	15	3	0	0	0	0.0441	1	7852	7852		123.21	27.393	1	2314600			64251	7929;725	52995	53045	70655	70655					-0.00466588347421748
YEENTTLTL	9	Unmodified	_YEENTTLTL_					0	0	0			REV__ENST00000604236.5_1_10:123239373-123278228:-|nuORF	REV__ENST00000604236.5_1_10:123239373-123278228:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	542.2666625976562	2	542.263862	1082.51317	-0.9181	-0.00049785	0.14575	7.9036E-05	-0.77235	-0.00041882	542.2640485171918	77.374	0.92118	74.558	74.293	75.214	-2.8165					47	18	4	0	0	0	0.48047	1	6189	6189		44.377	3.599	1	327580	+		64252	16817	52996	53046	70656	70656					-0.02478581101377131
YEEQEQKL	8	Unmodified	_YEEQEQKL_					0	0	0			REV__ENST00000463516.5_1_7:45009010-45014805:-|nuORF	REV__ENST00000463516.5_1_7:45009010-45014805:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	533.7573852539062	2	533.756204	1065.49785	-1.0134	-0.00054093	-0.12866	-6.8674E-05	-1.1421	-0.0006096	533.7550811103245	57.799	1.3613	54.455	54.035	55.397	-3.3449					66	26	3	0	0	0	0.62474	1	3773	3773		58.782	0	1	345380	+		64253	19376	52997	53047	70657	70657					-0.03227447898552782
YEEQEQKL	8	Unmodified	_YEEQEQKL_					0	0	0			REV__ENST00000463516.5_1_7:45009010-45014805:-|nuORF	REV__ENST00000463516.5_1_7:45009010-45014805:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	533.756204	1065.49785	-1.6045	-0.00085641	1.9718	0.0010524	0.36728	0.00019604	533.7566203123056	57.455	1.0944	54.663	54.228	55.323	-2.7921	0.10399	0.00062971	NaN	58.782	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51124	+		64254	19376	52997	53047							-0.03227447898552782
YEEQEQKL	8	Unmodified	_YEEQEQKL_					0	0	0			REV__ENST00000463516.5_1_7:45009010-45014805:-|nuORF	REV__ENST00000463516.5_1_7:45009010-45014805:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	533.756204	1065.49785	-1.0134	-0.00054093	-0.12866	-6.8674E-05	-1.1421	-0.0006096	533.7550811103245	57.799	1.3613	54.455	54.035	55.397	-3.3449	-0.10399	-0.0016125	NaN	58.782	66	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	345380	+		64255	19376	52997	53047							-0.03227447898552782
YEEQHPEL	8	Unmodified	_YEEQHPEL_					0	0	0		nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;IL32|p.V135Sfs*24|1|0.23|ENSG00000008517|chr16:3069051-3069052|-/GAGTGCTT|frameshift_variant;nc|ENSG00000008517|P24001-4|IL32	nc|ENSG00000008517|P24001-5|IL32	nc|ENSG00000008517|P24001-5|IL32	MULTI-MSMS	OvCa99_classI_Rep5	1	522.7378540039062	2	522.735271	1043.45599	-0.18755	-9.8041E-05	-0.023188	-1.2121E-05	-0.21074	-0.00011016	522.7351718009289	57.962	0.96435	57.962	57.566	58.53	0					59	22	4	0	0	0	0.26545	1	4886	4886		113.41	31.107	1	4137800			64256	923	52998	53048	70658	70658					-0.064000035871004
YEEQHPEL	8	Unmodified	_YEEQHPEL_					0	0	0		nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;IL32|p.V135Sfs*24|1|0.23|ENSG00000008517|chr16:3069051-3069052|-/GAGTGCTT|frameshift_variant;nc|ENSG00000008517|P24001-4|IL32	nc|ENSG00000008517|P24001-5|IL32	nc|ENSG00000008517|P24001-5|IL32	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.737060546875	2	522.735271	1043.45599	-0.28251	-0.00014768	-0.73947	-0.00038655	-1.022	-0.00053423	522.7347499294752	61.555	1.1953	58.098	57.816	59.011	-3.4577					59	24	3	0	0	0	0.24597	2	4225	4225;4241		116.9	45.608	1	492460			64257	923	52998	53048	70659;70660	70659					-0.064000035871004
YEEQHPEL	8	Unmodified	_YEEQHPEL_					0	0	0		nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;IL32|p.V135Sfs*24|1|0.23|ENSG00000008517|chr16:3069051-3069052|-/GAGTGCTT|frameshift_variant;nc|ENSG00000008517|P24001-4|IL32	nc|ENSG00000008517|P24001-5|IL32	nc|ENSG00000008517|P24001-5|IL32	MULTI-MATCH	OvCa9_classI_Rep2	2		2	522.735271	1043.45599	-0.76241	-0.00039854	0.0001619	8.463E-08	-0.76225	-0.00039846	522.7351264979817	60.995	1.105	58.225	57.871	58.976	-2.7702	0.12999	0.00019863	NaN	116.9	46	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	95478			64258	923	52998	53048							-0.064000035871004
YEETRQEVL	9	Unmodified	_YEETRQEVL_					0	0	0		ENST00000522752.5_1_8:38614850-38697853:+|nuORF;nc|ENSG00000147526|O75410-10|TACC1;nc|ENSG00000147526|O75410-5|TACC1;nc|ENSG00000147526|O75410-4|TACC1;nc|ENSG00000147526|O75410-6|TACC1;nc|ENSG00000147526|O75410-3|TACC1;nc|ENSG00000147526|O75410-7|TACC1;nc|ENSG00000147526|O75410-9|TACC1;ENSG00000147526|ENST00000317827|TACC1;nc|ENSG00000147526|O75410-2|TACC1	ENST00000522752.5_1_8:38614850-38697853:+|nuORF	ENST00000522752.5_1_8:38614850-38697853:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	583.7896118164062	2	583.788035	1165.56152	-0.54916	-0.00032059	0.30367	0.00017728	-0.24549	-0.00014331	583.7881729269177	60.146	0.73114	60.146	59.957	60.688	0					37	17	4	0	0	0	0.13326	1	5236	5236		88.177	29.947	1	2288700			64259	5362	52999	53049	70661	70661					-0.014640874614542554
YEEVARKL	8	Unmodified	_YEEVARKL_					0	0	0		nc|ENSG00000198467|P07951-3|TPM2;nc|ENSG00000198467|P07951-2|TPM2;CON__Q3SX28;ENSG00000198467|ENST00000645482|TPM2;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000143549|P06753-7|TPM3;ENST00000471212.5_1_9:35684790-35689844:-|nuORF;ENST00000558868.5_1_15:63340774-63353139:+|nuORF;ENST00000391998.3_1_19:53982901-53983033:+|nuORF;ENST00000469717.5_1_1:154145382-154155531:-|nuORF;ENST00000604975.1_1_9:35685264-35689844:-|nuORF;ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000167460|P67936-2|TPM4;ENST00000587201.5_1_19:16187360-16198908:+|nuORF;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-4|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-6|TPM1;ENSG00000140416|ENST00000403994|TPM1;ENST00000560975.5_1_15:63335715-63353895:+|nuORF;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-5|TPM3;ENST00000473036.2_1_1:154145382-154155604:-|nuORF	nc|ENSG00000198467|P07951-3|TPM2;ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000143549|P06753-3|TPM3	ENSG00000167460|ENST00000643579|TPM4	MULTI-MSMS	OvCa9_classI_Rep2	2	504.2801513671875	2	504.279649	1006.54475	-1.6431	-0.00082856	1.1851	0.0005976	-0.458	-0.00023096	504.28013580529404	50.546	2.428	47.752	47.331	49.759	-2.794					113	47	4	0	0	0	0.4531	2	3274	3274;3299		82.241	0	1	790080		+	64260	15257;6790;15075;15054	53000	53050	70662;70663	70662					0.04173456443231771
YEEVARKL	8	Unmodified	_YEEVARKL_					0	0	0		nc|ENSG00000198467|P07951-3|TPM2;nc|ENSG00000198467|P07951-2|TPM2;CON__Q3SX28;ENSG00000198467|ENST00000645482|TPM2;ENSG00000143549|ENST00000651641|TPM3;nc|ENSG00000143549|P06753-7|TPM3;ENST00000471212.5_1_9:35684790-35689844:-|nuORF;ENST00000558868.5_1_15:63340774-63353139:+|nuORF;ENST00000391998.3_1_19:53982901-53983033:+|nuORF;ENST00000469717.5_1_1:154145382-154155531:-|nuORF;ENST00000604975.1_1_9:35685264-35689844:-|nuORF;ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000167460|P67936-2|TPM4;ENST00000587201.5_1_19:16187360-16198908:+|nuORF;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000140416|P09493-4|TPM1;nc|ENSG00000140416|P09493-3|TPM1;nc|ENSG00000140416|P09493-10|TPM1;nc|ENSG00000140416|P09493-2|TPM1;nc|ENSG00000140416|P09493-5|TPM1;nc|ENSG00000140416|P09493-9|TPM1;nc|ENSG00000140416|P09493-7|TPM1;nc|ENSG00000140416|P09493-6|TPM1;ENSG00000140416|ENST00000403994|TPM1;ENST00000560975.5_1_15:63335715-63353895:+|nuORF;nc|ENSG00000143549|P06753-3|TPM3;nc|ENSG00000143549|P06753-4|TPM3;nc|ENSG00000143549|P06753-6|TPM3;nc|ENSG00000143549|P06753-2|TPM3;nc|ENSG00000143549|P06753-5|TPM3;ENST00000473036.2_1_1:154145382-154155604:-|nuORF	nc|ENSG00000198467|P07951-3|TPM2;ENSG00000167460|ENST00000643579|TPM4;nc|ENSG00000140416|P09493-8|TPM1;nc|ENSG00000143549|P06753-3|TPM3	ENSG00000167460|ENST00000643579|TPM4	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.27923583984375	2	504.279649	1006.54475	-1.2479	-0.00062928	0.79999	0.00040342	-0.44789	-0.00022586	504.2798157238675	50.925	2.3773	47.752	47.308	49.685	-3.1734					204	46	7	0	0	0	0.55617	1	2979	2979		71.877	3.0906	1	3361300		+	64261	15257;6790;15075;15054	53000	53050	70664	70664					0.04173456443231771
YEEVHVPAL	9	Unmodified	_YEEVHVPAL_					0	0	0		SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant;ENSG00000144028|ENST00000323853|SNRNP200;SNRNP200|p.D1323Lfs*87|1|0.04|ENSG00000144028|chr2:96286347-96286348|-/AG|frameshift_variant;SNRNP200|p.I595Pfs*10|1|0.03|ENSG00000144028|chr2:96295513-96295547|GTGTAGGTGCGCTCACCACCCTTGCGGGTGATGAT/-|frameshift_variant;nc|ENSG00000144028|O75643-2|SNRNP200	SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	528.7734375	2	528.771657	1055.52876	2.4446	0.0012926	-0.33169	-0.00017539	2.1129	0.0011172	528.7714734955584	96.437	1.5231	96.437	95.743	97.267	0					61	35	2	0	0	0	0.071436	2	10572	10514;10572		106.42	58.5	1	2271100			64262	5119	53001	53051	70665;70666	70666					0.00321750206330762
YEEVHVPAL	9	Unmodified	_YEEVHVPAL_					0	0	0		SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant;ENSG00000144028|ENST00000323853|SNRNP200;SNRNP200|p.D1323Lfs*87|1|0.04|ENSG00000144028|chr2:96286347-96286348|-/AG|frameshift_variant;SNRNP200|p.I595Pfs*10|1|0.03|ENSG00000144028|chr2:96295513-96295547|GTGTAGGTGCGCTCACCACCCTTGCGGGTGATGAT/-|frameshift_variant;nc|ENSG00000144028|O75643-2|SNRNP200	SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	528.771484375	2	528.771657	1055.52876	-0.32166	-0.00017008	-0.1826	-9.6556E-05	-0.50426	-0.00026664	528.7714366371371	96.883	2.2608	95.924	95.132	97.393	-0.95857					122	45	4	0	0	0	0.048552	1	8737	8737		119.56	64.781	1	379890			64263	5119	53001	53051	70667	70667					0.00321750206330762
YEEVHVPAL	9	Unmodified	_YEEVHVPAL_					0	0	0		SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant;ENSG00000144028|ENST00000323853|SNRNP200;SNRNP200|p.D1323Lfs*87|1|0.04|ENSG00000144028|chr2:96286347-96286348|-/AG|frameshift_variant;SNRNP200|p.I595Pfs*10|1|0.03|ENSG00000144028|chr2:96295513-96295547|GTGTAGGTGCGCTCACCACCCTTGCGGGTGATGAT/-|frameshift_variant;nc|ENSG00000144028|O75643-2|SNRNP200	SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	SNRNP200|p.W2065Gfs*3|1|0.07|ENSG00000144028|chr2:96275331-96275331|A/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.7720947265625	2	528.771657	1055.52876	-0.53527	-0.00028303	-0.013974	-7.3893E-06	-0.54924	-0.00029042	528.7715830708003	98.177	2.146	95.798	95.116	97.262	-2.3786					111	41	4	0	0	0	0.032351	6	8703	8688;8703;8715;8728;8741;8752		133.47	83.445	1	498800			64264	5119	53001	53051	70668;70669;70670;70671;70672;70673	70669					0.00321750206330762
YEEVIREES	9	Unmodified	_YEEVIREES_					0	0	0		nc|ENSG00000113758|Q16643|DBN1;ENSG00000113758|ENST00000393565|DBN1	nc|ENSG00000113758|Q16643|DBN1	nc|ENSG00000113758|Q16643|DBN1	MULTI-MSMS	OvCa99_classI_Rep5	1	577.2728271484375	2	577.272218	1152.52988	-0.22477	-0.00012975	-0.12507	-7.2202E-05	-0.34984	-0.00020195	577.2720218998287	58.343	0.54305	58.343	58.112	58.655	0					35	12	4	0	0	0	0.030867	1	4956	4956		134.77	36.136	1	1645100			64265	2993	53002	53052	70674	70674					-0.04028080215425689
YEFEGGVKL	9	Unmodified	_YEFEGGVKL_					0	0	0		nc|ENSG00000155158|Q5VTQ0-5|TTC39B;nc|ENSG00000155158|Q5VTQ0-2|TTC39B;nc|ENSG00000155158|Q5VTQ0-6|TTC39B;ENSG00000155158|ENST00000512701|TTC39B;nc|ENSG00000155158|Q5VTQ0-3|TTC39B;nc|ENSG00000155158|Q5VTQ0-4|TTC39B;nc|ENSG00000155158|Q5VTQ0|TTC39B;ENST00000505732.5_1_9:15186859-15307321:-|nuORF	nc|ENSG00000155158|Q5VTQ0-5|TTC39B	nc|ENSG00000155158|Q5VTQ0-5|TTC39B	MULTI-MSMS	OvCa99_classI_Rep5	1	521.2667846679688	2	521.266207	1040.51786	1.989	0.0010368	0.44854	0.00023381	2.4376	0.0012706	521.2660788079235	94.646	0.89595	94.646	94.348	95.244	0					39	18	4	0	0	0	0.025955	2	10324	10300;10324		139.97	52.216	1	3952300			64266	5771	53003	53053	70675;70676	70676					-0.0007765216794268781
YEFEGGVKL	9	Unmodified	_YEFEGGVKL_					0	0	0		nc|ENSG00000155158|Q5VTQ0-5|TTC39B;nc|ENSG00000155158|Q5VTQ0-2|TTC39B;nc|ENSG00000155158|Q5VTQ0-6|TTC39B;ENSG00000155158|ENST00000512701|TTC39B;nc|ENSG00000155158|Q5VTQ0-3|TTC39B;nc|ENSG00000155158|Q5VTQ0-4|TTC39B;nc|ENSG00000155158|Q5VTQ0|TTC39B;ENST00000505732.5_1_9:15186859-15307321:-|nuORF	nc|ENSG00000155158|Q5VTQ0-5|TTC39B	nc|ENSG00000155158|Q5VTQ0-5|TTC39B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	521.266207	1040.51786	0.28933	0.00015082	0.53056	0.00027656	0.8199	0.00042738	521.7680357300949	95.772	0.44778	94.744	94.565	95.013	-1.0281	0.048973	7.4987E-05	NaN	139.97	12	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8937.3			64267	5771	53003	53053							-0.0007765216794268781
YEGPLHSL	8	Unmodified	_YEGPLHSL_					0	0	0		nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-10|TCF4;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-2|TCF4;ENST00000562680.5_1_18:52899738-53018213:-|nuORF;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-11|TCF4	nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-7|TCF4	nc|ENSG00000196628|P15884-7|TCF4	MULTI-MSMS	OvCa99_classI_Rep5	1	458.2311706542969	2	458.232168	914.449782	1.8678	0.00085586	0.96396	0.00044172	2.8317	0.0012976	458.2328898773396	77.869	0.62201	77.869	77.672	78.294	0					29	14	3	0	0	0	0.59148	1	7862	7862		65.803	0	1	1318000			64268	15243;15244	53004	53054	70677	70677					-0.010864770279454206
YEGPLHSL	8	Unmodified	_YEGPLHSL_					0	0	0		nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-10|TCF4;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-2|TCF4;ENST00000562680.5_1_18:52899738-53018213:-|nuORF;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-11|TCF4	nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-7|TCF4	nc|ENSG00000196628|P15884-7|TCF4	MULTI-MATCH	OvCa9_classI_Rep3	3		2	458.232168	914.449782	-0.090493	-4.1467E-05	0.1229	5.6317E-05	0.032407	1.485E-05	458.2320658770531	80.571	0.87452	78.248	77.979	78.854	-2.3226	0.070193	0.0020807	NaN	65.803	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57798			64269	15243;15244	53004	53054							-0.010864770279454206
YEGPLHSL	8	Unmodified	_YEGPLHSL_					0	0	0		nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-12|TCF4;nc|ENSG00000196628|P15884-14|TCF4;nc|ENSG00000196628|P15884-10|TCF4;ENSG00000196628|ENST00000354452|TCF4;nc|ENSG00000196628|P15884-5|TCF4;nc|ENSG00000196628|P15884-13|TCF4;nc|ENSG00000196628|P15884-15|TCF4;nc|ENSG00000196628|P15884-9|TCF4;nc|ENSG00000196628|P15884-6|TCF4;nc|ENSG00000196628|P15884-8|TCF4;nc|ENSG00000196628|P15884-16|TCF4;nc|ENSG00000196628|P15884-4|TCF4;nc|ENSG00000196628|P15884-2|TCF4;ENST00000562680.5_1_18:52899738-53018213:-|nuORF;nc|ENSG00000196628|P15884-7|TCF4;nc|ENSG00000196628|P15884-11|TCF4	nc|ENSG00000196628|P15884|TCF4;nc|ENSG00000196628|P15884-7|TCF4	nc|ENSG00000196628|P15884-7|TCF4	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	458.232168	914.449782	-0.79404	-0.00036386	-6.7801	-0.0031069	-7.5742	-0.0034707	458.22882365634905	81.128	2.7237	78.417	77.714	80.438	-2.7106	0.23926	-0.0042457	NaN	65.803	70	55	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	326650			64270	15243;15244	53004	53054							-0.010864770279454206
YEGSPIKVTL	10	Unmodified	_YEGSPIKVTL_					0	0	0		ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000521260.1_1_5:170818338-170818467:+|nuORF;ENST00000513394.1_1_8:57014234-57014760:-|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	553.8109741210938	2	553.808239	1105.60193	2.3049	0.0012765	0.3749	0.00020762	2.6798	0.0014841	553.8083771265032	96.604	1.484	96.604	96.296	97.78	0					82	34	4	0	0	0	0.016395	2	10576	10576;10607		152.06	67.145	1	11594000			64271	7921	53005	53055	70678;70679	70678					0.05334878928965736
YEGSPIKVTL	10	Unmodified	_YEGSPIKVTL_					0	0	0		ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000521260.1_1_5:170818338-170818467:+|nuORF;ENST00000513394.1_1_8:57014234-57014760:-|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	553.80859375	2	553.808239	1105.60193	0.84629	0.00046868	-1.4409	-0.000798	-0.59465	-0.00032932	553.8073787988237	96.953	2.2611	95.994	95.53	97.791	-0.95857					129	45	4	0	0	0	0.012025	9	8759	8753;8759;8765;8770;8776;8783;8789;8795;8801		157.34	64.11	1	1628900			64272	7921	53005	53055	70680;70681;70682;70683;70684;70685;70686;70687;70688	70681					0.05334878928965736
YEGSPIKVTL	10	Unmodified	_YEGSPIKVTL_					0	0	0		ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000521260.1_1_5:170818338-170818467:+|nuORF;ENST00000513394.1_1_8:57014234-57014760:-|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8082275390625	2	553.808239	1105.60193	-0.88235	-0.00048866	-0.05588	-3.0947E-05	-0.93823	-0.0005196	553.8081629055349	97.793	2.4965	96.033	95.414	97.91	-1.7595					130	45	4	0	0	0	0.0091683	11	6498	6488;6493;6498;6503;6509;6515;6521;6528;6534;6542;6548		160.82	66.315	1	2464600			64273	7921	53005	53055	70689;70690;70691;70692;70693;70694;70695;70696;70697;70698;70699	70691					0.05334878928965736
YEGSPIKVTL	10	Unmodified	_YEGSPIKVTL_					0	0	0		ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000521260.1_1_5:170818338-170818467:+|nuORF;ENST00000513394.1_1_8:57014234-57014760:-|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.809326171875	2	553.808239	1105.60193	0.26772	0.00014826	-0.70348	-0.00038959	-0.43576	-0.00024133	553.8078417514711	98.322	2.5994	95.943	95.267	97.866	-2.3786					132	50	4	0	0	0	0.0016064	6	8733	8722;8733;8745;8757;8770;8784		173.39	74.763	1	2209300			64274	7921	53005	53055	70700;70701;70702;70703;70704;70705	70701					0.05334878928965736
YEGSPIKVTL	10	Unmodified	_YEGSPIKVTL_					0	0	0		ENST00000502784.2_1_5:93019019-93019256:-|nuORF;ENST00000518587.1_1_5:170814889-170819841:+|nuORF;nc|ENSG00000181163|P06748-3|NPM1;nc|ENSG00000181163|P06748-2|NPM1;ENSG00000181163|ENST00000296930|NPM1;ENST00000521260.1_1_5:170818338-170818467:+|nuORF;ENST00000513394.1_1_8:57014234-57014760:-|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	ENST00000502784.2_1_5:93019019-93019256:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	553.808239	1105.60193	2.6579	0.001472	0.54244	0.00030041	3.2003	0.0017724	553.8081500066992	96.132	0.33994	96.132	95.956	96.296	0	0.10595	0.0014687	NaN	173.39	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	275280			64275	7921	53005	53055							0.05334878928965736
YEIDDVERL	9	Unmodified	_YEIDDVERL_					0	0	0		ENSG00000162849|ENST00000407071|KIF26B;nc|ENSG00000162849|Q2KJY2-2|KIF26B;ENSG00000066735|ENST00000423312|KIF26A	ENSG00000162849|ENST00000407071|KIF26B;ENSG00000066735|ENST00000423312|KIF26A	ENSG00000162849|ENST00000407071|KIF26B	MULTI-MSMS	OvCa99_classI_Rep5	1	576.284423828125	2	576.282586	1150.55062	1.6742	0.00096482	0.16073	9.2628E-05	1.8349	0.0010574	576.2826507664325	96.859	1.7838	96.859	96.253	98.037	0					127	41	5	0	0	0	0.012992	3	10636	10606;10636;10666		159.28	64.035	1	33594000			64276	6240;1358	53006	53056	70706;70707;70708	70707					-0.018634898357504426
YEIERTIVQL	10	Unmodified	_YEIERTIVQL_					0	0	0		ENSG00000116752|ENST00000369541|BCAS2	ENSG00000116752|ENST00000369541|BCAS2	ENSG00000116752|ENST00000369541|BCAS2	MULTI-MSMS	OvCa9_classI_Rep2	2	632.350341796875	2	632.350803	1262.68705	-0.65	-0.00041103	0.6586	0.00041647	0.0085987	5.4374E-06	632.3511158557918	107.93	1.2791	107.7	107.44	108.72	-0.22498					63	25	4	0	0	0	0.16967	2	10092	10092;10099		99.013	31.519	1	164550			64277	3206	53007	53057	70709;70710	70709					0.06621624394756509
YEIERTIVQL	10	Unmodified	_YEIERTIVQL_					0	0	0		ENSG00000116752|ENST00000369541|BCAS2	ENSG00000116752|ENST00000369541|BCAS2	ENSG00000116752|ENST00000369541|BCAS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	632.3510131835938	2	632.350803	1262.68705	-0.10487	-6.6315E-05	0.32395	0.00020485	0.21908	0.00013853	632.3508410998671	109.23	1.4523	107.5	107.23	108.68	-1.7256					68	27	4	0	0	0	0.45953	2	10038	10025;10038		59.931	14.909	1	174900			64278	3206	53007	53057	70711;70712	70712					0.06621624394756509
YEIERTIVQL	10	Unmodified	_YEIERTIVQL_					0	0	0		ENSG00000116752|ENST00000369541|BCAS2	ENSG00000116752|ENST00000369541|BCAS2	ENSG00000116752|ENST00000369541|BCAS2	MULTI-MATCH	OvCa9_classI_Rep3	3		2	632.350803	1262.68705	0.30118	0.00019045	-0.44107	-0.00027891	-0.13989	-8.8461E-05	632.3504308948255	108.78	1.4517	107.58	107.32	108.77	-1.1978	-0.011209	-0.00092278	NaN	99.013	58	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	182470			64279	3206	53007	53057							0.06621624394756509
YEIGKRLE	8	Unmodified	_YEIGKRLE_					0	0	0		tr|A0A7D6W2C5|A0A7D6W2C5_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05820PE=4SV=1	tr|A0A7D6W2C5|A0A7D6W2C5_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05820PE=4SV=1	tr|A0A7D6W2C5|A0A7D6W2C5_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_05820PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	504.28033447265625	2	504.279649	1006.54475	-1.6431	-0.00082856	1.1851	0.0005976	-0.458	-0.00023096	504.28013580529404	50.546	2.428	47.752	47.331	49.759	-2.794					113	47	4	0	0	0	0.53531	1	3256	3256		73.975	5.49	1	790080			64280	35426	53008	53058	70713	70713					0.041734564432204024
YEIGSAITK	9	Unmodified	_YEIGSAITK_					0	0	0			REV__tr|A0A553SF44|A0A553SF44_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_08200PE=4SV=1	REV__tr|A0A553SF44|A0A553SF44_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_08200PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	491.2495422363281	2	491.266207	980.517862	-0.087975	-4.3219E-05	-3.1901	-0.0015672	-3.2781	-0.0016104	491.2641417659068	62.791	0.43251	59.333	59.21	59.642	-3.4577					16	8	3	0	0	0	0.027462	1	4378	4378		39.253	0	1	25233	+		64281	29535	53009	53059	70714	70714					0.02682347832035248
YEIGSAITK	9	Unmodified	_YEIGSAITK_					0	0	0			REV__tr|A0A553SF44|A0A553SF44_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_08200PE=4SV=1	REV__tr|A0A553SF44|A0A553SF44_NIACIDNA-bindingresponseregulatorOS=NialliacirculansOX=1397GN=CEQ21_08200PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	491.266207	980.517862	-0.96716	-0.00047513	1.0313	0.00050665	0.064154	3.1517E-05	491.26658967618835	61.956	0.7984	59.197	58.882	59.68	-2.7593	-0.067935	0.0010966	NaN	45.972	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36771	+		64282	29535	53009	53059							0.02682347832035248
YEIHRSLI	8	Unmodified	_YEIHRSLI_					0	0	0			REV__tr|A0A7D6ZYK8|A0A7D6ZYK8_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02665PE=4SV=1	REV__tr|A0A7D6ZYK8|A0A7D6ZYK8_9CLOTHelix-turn-helixtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_02665PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7877197265625	2	515.787641	1029.56073	0.6162	0.00031783	-0.30048	-0.00015498	0.31572	0.00016285	515.7872216200942	34.731	1.4032	31.943	31.648	33.051	-2.7881					67	27	4	0	0	0	0.57878	1	1058	1058		68.485	10.673	1	298250	+		64283	32381	53010	53060	70715	70715					0.047131626801501625
YEILNNPEL	9	Unmodified	_YEILNNPEL_					0	0	0		ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	MULTI-MSMS	OvCa99_classI_Rep5	1	552.783203125	2	552.782222	1103.54989	1.6773	0.00092718	-0.228	-0.00012603	1.4493	0.00080114	552.781984441079	117	1.0196	117	116.77	117.79	0					63	21	4	0	0	0	0.011767	3	13405	13383;13405;13461		163.15	56.143	1	3077200			64284	4278	53011	53061	70716;70717;70718	70717					0.0022571551517103217
YEILNNPEL	9	Unmodified	_YEILNNPEL_					0	0	0		ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	MULTI-MSMS	OvCa9_classI_Rep2	2	552.7824096679688	2	552.782222	1103.54989	0.0023486	1.2982E-06	-0.10093	-5.579E-05	-0.098578	-5.4492E-05	552.7820322191556	115.98	1.1882	115.87	115.49	116.68	-0.11777					57	23	3	0	0	0	0.084918	3	11068	11068;11076;11083		101.25	37.045	1	146950			64285	4278	53011	53061	70719;70720;70721	70719					0.0022571551517103217
YEILNNPEL	9	Unmodified	_YEILNNPEL_					0	0	0		ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	MULTI-MSMS	OvCa9_classI_Rep3	3	552.7813720703125	2	552.782222	1103.54989	-1.1805	-0.00065256	0.97368	0.00053823	-0.20682	-0.00011433	552.7825987249994	116.65	1.0396	115.61	115.29	116.33	-1.0414					60	20	4	0	0	0	0.0441	3	8723	8719;8723;8731		123.21	50.329	1	293990			64286	4278	53011	53061	70722;70723;70724	70723					0.0022571551517103217
YEILNNPEL	9	Unmodified	_YEILNNPEL_					0	0	0		ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	MULTI-MSMS	OvCa9_classI_Rep4_	4	552.7810668945312	2	552.782222	1103.54989	-0.22997	-0.00012712	0.15042	8.3149E-05	-0.079546	-4.3972E-05	552.782114216055	116.95	0.99496	115.59	115.3	116.29	-1.3645					55	18	4	0	0	0	0.07097	3	10934	10922;10934;10949		106.68	6.5409	1	298420			64287	4278	53011	53061	70725;70726;70727	70726					0.0022571551517103217
YEILNNPEL	9	Unmodified	_YEILNNPEL_					0	0	0		ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	ENSG00000134308|ENST00000238081|YWHAQ	MULTI-MATCH	OvCa9_classI_Rep2	2		2	552.782222	1103.54989	-0.22545	-0.00012462	-3.5028	-0.0019363	-3.7283	-0.0020609	552.7819689449993	116.83	0.29645	116.7	116.52	116.82	-0.12868	-0.14844	-0.0035002	NaN	163.15	6	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8472.6			64288	4278	53011	53061							0.0022571551517103217
YEIVNRASL	9	Unmodified	_YEIVNRASL_					0	0	0		DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.F3496Wfs*92|1|0.14|ENSG00000197102|chr14:102034043-102034044|-/GACCTGGCAGCTGTCGAGGC|frameshift_variant;ENST00000556791.1_1_14:102499420-102503925:+|nuORF	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.7913208007812	2	532.790381	1063.56621	-1.7806	-0.0009487	0.95762	0.00051021	-0.82301	-0.00043849	532.7905334725534	81.476	1.6048	78.766	78.298	79.902	-2.7106					73	32	4	0	0	0	0.14445	1	6701	6701		85.862	32.51	1	507080			64289	767	53012	53062	70728	70728					0.036968414719467546
YEKDDKLTP	9	Unmodified	_YEKDDKLTP_					0	0	0		ENSG00000092820|ENST00000367075|EZR;EZR-PARP3|1|fusion	ENSG00000092820|ENST00000367075|EZR;EZR-PARP3|1|fusion	EZR-PARP3|1|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	554.780517578125	2	554.779679	1107.5448	0.31874	0.00017683	-0.9857	-0.00054685	-0.66697	-0.00037002	554.7792402535881	47.31	2.036	44.238	43.604	45.64	-3.0724					125	39	4	0	0	0	0.1944	1	2531	2531		77.318	13.11	1	601050			64290	14317;1900	53013	53063	70729	70729					-0.004665883474444854
YEKDDKLTP	9	Unmodified	_YEKDDKLTP_					0	0	0		ENSG00000092820|ENST00000367075|EZR;EZR-PARP3|1|fusion	ENSG00000092820|ENST00000367075|EZR;EZR-PARP3|1|fusion	EZR-PARP3|1|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	554.779679	1107.5448	0.15995	8.8736E-05	-0.84953	-0.0004713	-0.68959	-0.00038257	554.7791321799178	47.019	1.4368	44.31	43.894	45.331	-2.7097	0.035969	7.5455E-05	NaN	77.318	69	28	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	115510			64291	14317;1900	53013	53063							-0.004665883474444854
YEKDLIEAI	9	Unmodified	_YEKDLIEAI_					0	0	0		ENSG00000141741|ENST00000394231|MIEN1	ENSG00000141741|ENST00000394231|MIEN1	ENSG00000141741|ENST00000394231|MIEN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	547.2929077148438	2	547.292422	1092.57029	-0.92059	-0.00050383	-0.69043	-0.00037787	-1.611	-0.0008817	547.2915405223721	101.26	1.4796	98.992	98.602	100.08	-2.2665					62	29	3	0	0	0	0.35444	1	9102	9102		56.721	3.3696	1	282850			64292	4937	53014	53064	70730	70730					0.0277088617501704
YEKDLIEAI	9	Unmodified	_YEKDLIEAI_					0	0	0		ENSG00000141741|ENST00000394231|MIEN1	ENSG00000141741|ENST00000394231|MIEN1	ENSG00000141741|ENST00000394231|MIEN1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	547.292422	1092.57029	-0.76026	-0.00041608	0.91114	0.00049866	0.15089	8.2579E-05	547.292243905038	99.966	1.2892	99.136	98.716	100.01	-0.83051	0.060439	0.0007132	NaN	56.721	61	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	208930			64293	4937	53014	53064							0.0277088617501704
YEKDLIEAI	9	Unmodified	_YEKDLIEAI_					0	0	0		ENSG00000141741|ENST00000394231|MIEN1	ENSG00000141741|ENST00000394231|MIEN1	ENSG00000141741|ENST00000394231|MIEN1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	547.292422	1092.57029	-1.3022	-0.0007127	0.93346	0.00051087	-0.36877	-0.00020182	547.2922094439023	100.7	1.418	99.098	98.659	100.08	-1.6053	0.023131	0.00073762	NaN	56.721	70	27	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	290600			64294	4937	53014	53064							0.0277088617501704
YEKFPLEL	8	Unmodified	_YEKFPLEL_					0	0	0		nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;ENSG00000072163|ENST00000355119|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000072163|Q7Z4I7-4|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;ENST00000469300.6_1_2:128396858-128397856:-|nuORF;ENST00000484252.5_1_2:128396858-128398238:-|nuORF	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	MULTI-MSMS	OvCa9_classI_Rep2	2	519.7787475585938	2	519.778951	1037.54335	0.85317	0.00044346	-1.0883	-0.00056566	-0.23509	-0.0001222	519.7782343509249	112.42	2.2212	112.3	111.88	114.1	-0.12174					93	44	4	0	0	0	0.58851	2	10644	10638;10644		66.429	0.6261	1	285660			64295	1467	53015	53065	70731;70732	70732					0.02607822354457312
YEKFPLEL	8	Unmodified	_YEKFPLEL_					0	0	0		nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;ENSG00000072163|ENST00000355119|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000072163|Q7Z4I7-4|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;ENST00000469300.6_1_2:128396858-128397856:-|nuORF;ENST00000484252.5_1_2:128396858-128398238:-|nuORF	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	MULTI-MSMS	OvCa9_classI_Rep3	3	519.7797241210938	2	519.778951	1037.54335	1.2699	0.00066005	-0.95152	-0.00049458	0.31835	0.00016547	519.7782245097615	113.21	1.87	112.13	111.76	113.63	-1.0753					89	36	3	0	0	0	0.24597	4	8321	8306;8311;8316;8321		116.9	47.276	1	347770			64296	1467	53015	53065	70733;70734;70735;70736	70736					0.02607822354457312
YEKFPLEL	8	Unmodified	_YEKFPLEL_					0	0	0		nc|ENSG00000072163|Q7Z4I7-3|LIMS2;nc|ENSG00000072163|Q7Z4I7-2|LIMS2;ENSG00000072163|ENST00000355119|LIMS2;nc|ENSG00000072163|Q7Z4I7-5|LIMS2;nc|ENSG00000169756|P48059-3|LIMS1;nc|ENSG00000169756|P48059|LIMS1;nc|ENSG00000169756|P48059-4|LIMS1;nc|ENSG00000072163|Q7Z4I7-4|LIMS2;ENSG00000169756|ENST00000544547|LIMS1;nc|ENSG00000169756|P48059-5|LIMS1;ENST00000469300.6_1_2:128396858-128397856:-|nuORF;ENST00000484252.5_1_2:128396858-128398238:-|nuORF	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	nc|ENSG00000072163|Q7Z4I7-3|LIMS2	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.7783813476562	2	519.778951	1037.54335	0.18076	9.3955E-05	-0.48417	-0.00025166	-0.30341	-0.00015771	519.7785039583339	113.57	2.019	112.13	111.8	113.82	-1.4461					98	39	4	0	0	0	0.3457	3	10534	10512;10523;10534		98.629	39.847	1	390830			64297	1467	53015	53065	70737;70738;70739	70739					0.02607822354457312
YEKGDEDEF	9	Unmodified	_YEKGDEDEF_					0	0	0			REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9	REV__nc|ENSG00000088387|Q9BZ29-3|DOCK9	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.2987060546875	2	566.227476	1130.4404	2.0141	0.0011405	2.8535	0.0016157	4.8676	0.0027562	566.2285643299076	134.9	0.65515	134.9	134.52	135.17	0					27	14	3	0	0	0	0.027462	1	15713	15713		32.812	17.948	1	131840	+		64298	17178	53016	53066	70740	70740					-0.11960334894797597
YEKIDLTLL	9	Unmodified	_YEKIDLTLL_					0	0	0		PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant;PRPF8|p.Q2065Hfs*8|1|0.04|ENSG00000174231|chr17:1653809-1653810|-/G|frameshift_variant;ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.Q1835Afs*4|1|0.07|ENSG00000174231|chr17:1658255-1658256|-/C|frameshift_variant;PRPF8|p.F1684Dfs*30|1|0.07|ENSG00000174231|chr17:1659445-1659446|-/AAGTCAGGAGATCGAGACCATC|frameshift_variant	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	554.3187866210938	2	554.31844	1106.62233	-0.16637	-9.222E-05	-0.43438	-0.00024078	-0.60074	-0.000333	554.3181046507004	121.07	0.88916	120.88	120.65	121.54	-0.19718					28	17	2	0	0	0	0.3249	1	11701	11701		60.118	1.3363	1	87648			64299	7449	53017	53067	70741	70741					0.07328049588772956
YEKIKGAFKK	10	Unmodified	_YEKIKGAFKK_					0	0	0			REV__tr|A0A7D6VPI2|A0A7D6VPI2_9CLOTFprAfamilyA-typeflavoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23150PE=3SV=1	REV__tr|A0A7D6VPI2|A0A7D6VPI2_9CLOTFprAfamilyA-typeflavoproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_23150PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.557373046875	3	404.576408	1210.70739	0.50588	0.00020467	2.7201	0.0011005	3.226	0.0013052	404.57760853982825	42.133	0.26057	42.133	41.982	42.242	0					8	5	2	0	0	0	0.026666	1	2669	2669		51.528	7.1506	1	51281	+		64300	31249	53018	53068	70742	70742					0.11046839845221257
YEKIKKVY	8	Unmodified	_YEKIKKVY_					0	0	0			REV__tr|A0A7D6W1N0|A0A7D6W1N0_9CLOTLytTRfamilytranscriptionalregulatorDNA-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03295PE=4SV=1	REV__tr|A0A7D6W1N0|A0A7D6W1N0_9CLOTLytTRfamilytranscriptionalregulatorDNA-bindingdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_03295PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	535.8140869140625	2	535.815867	1069.61718	-0.76163	-0.0004081	-1.2596	-0.00067493	-2.0213	-0.001083	535.8146268259228	44.821	1.2946	42.112	41.653	42.947	-2.7097					61	25	4	0	0	0	0.73938	1	2561	2561		31.955	1.4512	1	428190	+		64301	31886	53019	53069	70743	70743					0.08515790516798916
YEKILVAL	8	Unmodified	_YEKILVAL_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000491192.1_1_9:75783887-75785020:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	OvCa9_classI_Rep2	2	474.7907409667969	2	474.791861	947.569169	-0.69046	-0.00032782	0.40897	0.00019418	-0.28149	-0.00013365	474.79202645509866	104.47	3.1263	103.9	102.78	105.91	-0.57639					85	62	2	0	0	0	0.55617	3	9678	9672;9678;9685		71.877	16.373	1	447420			64302	4351	53020	53070	70744;70745;70746	70745					0.09328716596769482
YEKILVAL	8	Unmodified	_YEKILVAL_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000491192.1_1_9:75783887-75785020:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	OvCa9_classI_Rep3	3	474.7915344238281	2	474.791861	947.569169	1.2333	0.00058557	-1.4493	-0.0006881	-0.21593	-0.00010252	474.79105656347525	105.32	2.0093	103.97	103.62	105.63	-1.3482					88	38	4	0	0	0	0.34187	6	7373	7370;7373;7379;7387;7393;7399		99.375	33.572	1	503470			64303	4351	53020	53070	70747;70748;70749;70750;70751;70752	70748					0.09328716596769482
YEKILVAL	8	Unmodified	_YEKILVAL_					0	0	0		ENSG00000135046|ENST00000257497|ANXA1;ENST00000491192.1_1_9:75783887-75785020:+|nuORF	ENSG00000135046|ENST00000257497|ANXA1	ENSG00000135046|ENST00000257497|ANXA1	MULTI-MSMS	OvCa9_classI_Rep4_	4	474.79302978515625	2	474.791861	947.569169	0.057506	2.7303E-05	-0.39175	-0.000186	-0.33424	-0.0001587	474.79159448601337	105.99	2.2416	103.97	103	105.24	-2.0161					96	43	4	0	0	0	0.55617	4	9664	9627;9639;9652;9664		71.877	23.962	1	498360			64304	4351	53020	53070	70753;70754;70755;70756	70756					0.09328716596769482
YEKKAAKL	8	Unmodified	_YEKKAAKL_					0	0	0		ENSG00000189403|ENST00000341423|HMGB1;nc|ENSG00000067066|P23497|SP100	ENSG00000189403|ENST00000341423|HMGB1;nc|ENSG00000067066|P23497|SP100	ENSG00000189403|ENST00000341423|HMGB1	MULTI-MSMS	OvCa99_classI_Rep5	1	475.7867431640625	2	475.78711	949.559667	-0.86129	-0.00040979	0.58047	0.00027618	-0.28082	-0.00013361	475.78724350906873	27.416	0.4499	27.416	27.241	27.691	0					25	8	4	0	0	0	0.59904	1	806	806		64.207	20.09	1	771860			64305	8555;14886	53021	53071	70757	70757					0.08286948311229025
YEKKAAKL	8	Unmodified	_YEKKAAKL_					0	0	0		ENSG00000189403|ENST00000341423|HMGB1;nc|ENSG00000067066|P23497|SP100	ENSG00000189403|ENST00000341423|HMGB1;nc|ENSG00000067066|P23497|SP100	ENSG00000189403|ENST00000341423|HMGB1	MULTI-MSMS	OvCa9_classI_Rep2	2	475.786865234375	2	475.78711	949.559667	-0.029569	-1.4069E-05	-0.66818	-0.00031791	-0.69775	-0.00033198	475.78674140613987	31.394	0.83896	28.684	28.543	29.382	-2.7097					48	16	5	0	0	0	0.6345	2	946	946;952		56.721	14.247	1	116230			64306	8555;14886	53021	53071	70758;70759	70758					0.08286948311229025
YEKKKELLKEE	11	Unmodified	_YEKKKELLKEE_					0	0	0		tr|A0A7D7AGG7|A0A7D7AGG7_9CLOTYoaPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08700PE=4SV=1	tr|A0A7D7AGG7|A0A7D7AGG7_9CLOTYoaPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08700PE=4SV=1	tr|A0A7D7AGG7|A0A7D7AGG7_9CLOTYoaPdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08700PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	479.6022033691406	3	479.604692	1435.79225	-5.1747	-0.0024818	3.3734	0.0016179	-1.8012	-0.00086387	479.6061020578771	161.6	0.9082	161.38	161.14	162.05	-0.22696					38	17	3	0	0	0	0.72528	1	16478	16478		11.932	1.3456	1	49518			64307	36264	53022	53072	70760	70760					0.09178120800538636
YEKLQEMQI	9	Unmodified	_YEKLQEMQI_					0	0	0		ENSG00000181381|ENST00000682922|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	ENSG00000181381|ENST00000682922|DDX60L	MULTI-MSMS	OvCa99_classI_Rep5	1	591.296630859375	2	591.297181	1180.57981	0.2834	0.00016757	2.7562	0.0016297	3.0396	0.0017973	591.2987466793606	46.22	1.1843	46.22	46.024	47.208	0					50	26	2	0	0	0	0.59259	1	3278	3278		32.812	0.061884	1	2946100			64308	7929	53023	53073	70761	70761					-0.003256688111150652
YEKPEAPEL	9	Unmodified	_YEKPEAPEL_					0	0	0		ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	ENSG00000138801|ENST00000265174|PAPSS1	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.2700805664062	2	538.268947	1074.52334	-0.88345	-0.00047553	0.73028	0.00039309	-0.15316	-8.2443E-05	538.269152889749	74.835	1.1611	71.605	71.337	72.498	-3.2308					44	23	2	0	0	0	0.17606	1	5877	5877		80.455	1.0036	1	743520			64309	4734	53024	53074	70762	70762					-0.010939733761460957
YEKSKKMLN	9	Unmodified	_YEKSKKMLN_					0	0	0			REV__ENSG00000103540|ENST00000694978|CCP110	REV__ENSG00000103540|ENST00000694978|CCP110	MULTI-MSMS	OvCa99_classI_Rep5	1	570.809326171875	2	570.807716	1139.60088	-0.6936	-0.00039591	-1.6863	-0.00096252	-2.3798	-0.0013584	570.8068802584319	25.506	0.2017	25.506	25.342	25.544	0					5	3	2	0	0	0	0.53483	1	581	581		39.253	2.2244	1	81704	+		64310	17624	53025	53075	70763	70763					0.03666341288408148
YEKSKKMLN	9	Unmodified	_YEKSKKMLN_					0	0	0			REV__ENSG00000103540|ENST00000694978|CCP110	REV__ENSG00000103540|ENST00000694978|CCP110	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	570.807716	1139.60088	-0.6936	-0.00039591	-1.6863	-0.00096252	-2.3798	-0.0013584	570.8068802584319	25.506	0.2017	25.506	25.342	25.544	0	0	0	NaN	39.253	5	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	81704	+		64311	17624	53025	53075							0.03666341288408148
YEKTPFDQL	9	Unmodified	_YEKTPFDQL_					0	0	0		nc|ENSG00000255302|Q9Y6B2-2|EID1;ENSG00000255302|ENST00000530028|EID1	nc|ENSG00000255302|Q9Y6B2-2|EID1	nc|ENSG00000255302|Q9Y6B2-2|EID1	MULTI-MSMS	OvCa9_classI_Rep2	2	570.78125	2	570.782222	1139.54989	-0.2596	-0.00014818	0.21453	0.00012245	-0.045071	-2.5726E-05	570.7820177377638	92.55	2.0234	91.382	90.866	92.889	-1.168					86	38	4	0	0	0	0.10188	2	8251	8245;8251		96.665	8.4881	1	326650			64312	9454	53026	53076	70764;70765	70765					-0.014302844848316454
YEKTPFDQL	9	Unmodified	_YEKTPFDQL_					0	0	0		nc|ENSG00000255302|Q9Y6B2-2|EID1;ENSG00000255302|ENST00000530028|EID1	nc|ENSG00000255302|Q9Y6B2-2|EID1	nc|ENSG00000255302|Q9Y6B2-2|EID1	MULTI-MSMS	OvCa9_classI_Rep3	3	570.7806396484375	2	570.782222	1139.54989	-1.6545	-0.00094433	1.1646	0.00066475	-0.48982	-0.00027958	570.7826429262274	93.189	2.0081	91.227	90.79	92.798	-1.9617					88	39	5	0	0	0	0.028475	2	5948	5948;5966		136.99	27.077	1	630840			64313	9454	53026	53076	70766;70767	70766					-0.014302844848316454
YEKTPFDQL	9	Unmodified	_YEKTPFDQL_					0	0	0		nc|ENSG00000255302|Q9Y6B2-2|EID1;ENSG00000255302|ENST00000530028|EID1	nc|ENSG00000255302|Q9Y6B2-2|EID1	nc|ENSG00000255302|Q9Y6B2-2|EID1	MULTI-MSMS	OvCa9_classI_Rep4_	4	570.7814331054688	2	570.782222	1139.54989	-0.43825	-0.00025014	-0.37946	-0.00021659	-0.81771	-0.00046673	570.7817593054085	93.787	1.6089	91.28	90.863	92.472	-2.5072					82	33	3	0	0	0	0.014655	2	8195	8176;8195		154.01	49.954	1	669460			64314	9454	53026	53076	70768;70769	70769					-0.014302844848316454
YELARKID	8	Unmodified	_YELARKID_					0	0	0		ENST00000362097.1_1_X:49354144-49355288:+|nuORF	ENST00000362097.1_1_X:49354144-49355288:+|nuORF	ENST00000362097.1_1_X:49354144-49355288:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.27862548828125	2	504.279649	1006.54475	-1.2479	-0.00062928	0.79999	0.00040342	-0.44789	-0.00022586	504.2798157238675	50.925	2.3773	47.752	47.308	49.685	-3.1734					204	46	7	0	0	0	0.53531	2	2966	2966;3003		73.975	0	1	3361300			64315	10815	53027	53077	70770;70771	70770					0.04173456443231771
YELIIKKKHRD	11	Unmodified	_YELIIKKKHRD_					0	0	0		nc|ENSG00000108244|Q9C075-2|KRT23;ENST00000582754.5_1_17:39081604-39092927:-|nuORF;ENSG00000108244|ENST00000209718|KRT23;CON__Q9C075	nc|ENSG00000108244|Q9C075-2|KRT23	nc|ENSG00000108244|Q9C075-2|KRT23	MULTI-SECPEP	OvCa9_classI_Rep2	2	481.282958984375	3	481.620788	1441.84053	-5.2161	-0.0025122	-1.3483	-0.00064935	-6.5643	-0.0031615	481.62017315490516	160.42	1.6902	160.19	159.4	161.09	-0.22696					47	34	2	0	0	0	0.026488	1	16273	16273		10.104	1.3046	1	32753		+	64316	664	53028	53078	70772	70772					0.13728659231060192
YELKEKDVL	9	Unmodified	_YELKEKDVL_					0	0	0		ENSG00000163877|ENST00000296215|SNIP1	ENSG00000163877|ENST00000296215|SNIP1	ENSG00000163877|ENST00000296215|SNIP1	MULTI-MSMS	OvCa99_classI_Rep5	1	568.8155517578125	2	568.813522	1135.61249	-0.50025	-0.00028455	0.28805	0.00016385	-0.2122	-0.0001207	568.8136163350223	68.016	0.74868	68.016	67.566	68.315	0					29	18	2	0	0	0	0.1243	1	6403	6403		90.601	26.394	1	1518100			64317	6371	53029	53079	70773	70773					0.05010861583377846
YELNRLSI	8	Unmodified	_YELNRLSI_					0	0	0			REV__ENST00000277415.15_1_9:137989658-137989826:+|nuORF	REV__ENST00000277415.15_1_9:137989658-137989826:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	504.27947998046875	2	504.279649	1006.54475	-1.6431	-0.00082856	1.1851	0.0005976	-0.458	-0.00023096	504.28013580529404	50.546	2.428	47.752	47.331	49.759	-2.794					113	47	4	0	0	0	0.62474	2	3312	3306;3312		58.782	2.0609	1	790080	+		64318	24101	53030	53080	70774;70775	70775					0.04173456443231771
YELPDGQVI	9	Unmodified	_YELPDGQVI_					0	0	0		ENSG00000075624|ENST00000646664|ACTB;ENSG00000184009|ENST00000573283|ACTG1;ENST00000576209.5_1_17:79477718-79479174:-|nuORF;ENST00000493945.5_1_7:5567882-5569288:-|nuORF;ENST00000576917.5_1_17:79478157-79479765:-|nuORF;ENST00000574671.5_1_17:79477718-79478688:-|nuORF;ENST00000462494.5_1_7:5567381-5568494:-|nuORF;ENSG00000169067|ENST00000423391|ACTBL2;ENSG00000196834|ENST00000451531|POTEI;nc|ENSG00000204434|Q9BYX7|POTEKP;ENST00000397487.3_1_2:132383579-132384836:+|nuORF;ENSG00000222038|ENST00000409602|POTEJ;ENSG00000188219|ENST00000683005|POTEE;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1;ENSG00000143632|ENST00000366684|ACTA1;ENSG00000163017|ENST00000345517|ACTG2;ENSG00000107796|ENST00000224784|ACTA2;nc|ENSG00000163017|P63267-2|ACTG2	ENSG00000075624|ENST00000646664|ACTB;ENSG00000196604|ENST00000409914|POTEF;ENSG00000159251|ENST00000290378|ACTC1	ENSG00000075624|ENST00000646664|ACTB	MULTI-MSMS	OvCa99_classI_Rep5	1	517.263671875	2	517.263665	1032.51278	1.8485	0.00095618	0.65244	0.00033748	2.501	0.0012937	517.2637934075968	120.52	1.4298	120.52	120.18	121.61	0					49	33	3	0	0	0	0.094616	2	13837	13837;13864		98.629	37.657	1	923420			64319	1537;8634;5081	53031	53081	70776;70777	70776					-0.00217956030564892
YELQESNVRL	10	Unmodified	_YELQESNVRL_					0	0	0		ENSG00000138758|ENST00000264893|SEPTIN11;nc|ENSG00000138758|Q9NVA2-2|SEPTIN11	ENSG00000138758|ENST00000264893|SEPTIN11	ENSG00000138758|ENST00000264893|SEPTIN11	MULTI-MSMS	OvCa99_classI_Rep5	1	625.82373046875	2	625.822409	1249.63027	1.685	0.0010545	0.45852	0.00028695	2.1435	0.0013415	625.8226618558483	87.374	0.65929	87.374	87.135	87.794	0					40	15	4	0	0	0	0.22073	1	9254	9254		91.265	27.731	1	1602200			64320	4722	53032	53082	70778	70778					0.01543576838230365
YELVYTARTE	10	Unmodified	_YELVYTARTE_					0	0	0		nc|ENSG00000110171|O75382-3|TRIM3;nc|ENSG00000110171|O75382-2|TRIM3;ENSG00000110171|ENST00000345851|TRIM3;nc|ENSG00000110171|O75382-4|TRIM3	nc|ENSG00000110171|O75382-3|TRIM3	nc|ENSG00000110171|O75382-3|TRIM3	MULTI-SECPEP	OvCa99_classI_Rep5	1	415.5585021972656	3	415.543432	1243.60847	0.24618	0.0001023	1.4289	0.00059378	1.6751	0.00069608	415.54395897862497	55.54	0.3644	55.54	55.358	55.723	0					11	8	2	0	0	0	0.026803	1	4541	4541		47.96	25.398	1	211150			64321	2760	53033	53083	70779	70779					-0.003592279103486362
YELWLEDL	8	Unmodified	_YELWLEDL_					0	0	0		tr|A0A7D6VSH3|A0A7D6VSH3_9CLOTDUF2812domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12760PE=4SV=1	tr|A0A7D6VSH3|A0A7D6VSH3_9CLOTDUF2812domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12760PE=4SV=1	tr|A0A7D6VSH3|A0A7D6VSH3_9CLOTDUF2812domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_12760PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.7651977539062	2	540.76604	1079.51753	-1.1746	-0.0006352	-1.7578	-0.00095053	-2.9324	-0.0015857	540.764434696453	79.693	3.1481	76.941	76.37	79.518	-2.7514					177	64	7	0	0	0	0.61758	1	6509	6509		60.294	3.5729	1	600170			64322	35025	53034	53084	70780	70780					-0.01905071887813392
YENSPQQVF	9	Unmodified	_YENSPQQVF_					0	0	0		ENSG00000125730|ENST00000245907|C3;C3|p.Y686Cfs*19|1|0.14|ENSG00000125730|chr19:6707264-6707265|-/AC|frameshift_variant	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	OvCa9_classI_Rep3	3	556.2568969726562	2	556.256371	1110.49819	-0.81014	-0.00045065	0.51648	0.0002873	-0.29366	-0.00016335	556.2565378248732	88.622	2.4573	86.491	86.163	88.62	-2.1309					105	48	4	0	0	0	0.049969	1	5402	5402		118.74	20.114	1	690210			64323	3725	53035	53085	70781	70781					-0.05264028178703484
YENSPQQVF	9	Unmodified	_YENSPQQVF_					0	0	0		ENSG00000125730|ENST00000245907|C3;C3|p.Y686Cfs*19|1|0.14|ENSG00000125730|chr19:6707264-6707265|-/AC|frameshift_variant	ENSG00000125730|ENST00000245907|C3	ENSG00000125730|ENST00000245907|C3	MULTI-MSMS	OvCa9_classI_Rep4_	4	556.257080078125	2	556.256371	1110.49819	0.83143	0.00046249	-0.80963	-0.00045036	0.021796	1.2124E-05	556.2558166044931	89.394	2.0041	86.791	86.385	88.389	-2.6027					93	39	4	0	0	0	0.043101	3	7663	7653;7663;7675		124.08	36.384	1	603310			64324	3725	53035	53085	70782;70783;70784	70783					-0.05264028178703484
YEPFDPTK	8	Unmodified	_YEPFDPTK_					0	0	0		tr|A0A7D6W178|A0A7D6W178_9CLOTIsopropylmalatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02710PE=4SV=1	tr|A0A7D6W178|A0A7D6W178_9CLOTIsopropylmalatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02710PE=4SV=1	tr|A0A7D6W178|A0A7D6W178_9CLOTIsopropylmalatesynthaseOS=ClostridiumintestinaleOX=36845GN=HZF06_02710PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.7878723144531	2	498.737283	995.460012	0.41126	0.00020511	-1.3578	-0.00067719	-0.94655	-0.00047208	498.73645341033784	37.798	2.1379	34.906	34.092	36.23	-2.8925					73	42	2	0	0	0	0.028476	1	1444	1444		34.173	0	1	35790			64325	35402	53036	53086	70785	70785					-0.0378991409338596
YEPKLIIDL	9	Unmodified	_YEPKLIIDL_					0	0	0		ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	ENSG00000069956|ENST00000261845|MAPK6	MULTI-MSMS	OvCa99_classI_Rep5	1	552.3245849609375	2	552.320983	1102.62741	1.526	0.00084285	-1.5288	-0.00084441	-0.0028253	-1.5605E-06	552.3197818028196	122.84	0.83243	122.84	122.45	123.28	0					39	17	3	0	0	0	0.34132	1	14157	14157		58.23	1.5089	1	226140			64326	1411	53037	53087	70786	70786					0.08020353451388473
YEPPVQESV	9	Unmodified	_YEPPVQESV_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.2528686523438	2	524.253297	1046.49204	0.33974	0.00017811	-0.8007	-0.00041977	-0.46096	-0.00024166	524.252500765751	84.39	1.0901	81.727	81.504	82.594	-2.6629					52	22	3	0	0	0	0.1149	1	7079	7079		93.143	32.171	1	212120			64327	5224	53038	53088	70787	70787					-0.029345464102334518
YEPPVQESV	9	Unmodified	_YEPPVQESV_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	524.253297	1046.49204	-0.39914	-0.00020925	0.50002	0.00026214	0.10089	5.289E-05	524.2533670526223	83.693	0.65265	82.095	81.778	82.43	-1.5988	0.22294	0.0003819	NaN	93.143	22	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43097			64328	5224	53038	53088							-0.029345464102334518
YEPPVQESV	9	Unmodified	_YEPPVQESV_					0	0	0		ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	ENSG00000145425|ENST00000274065|RPS3A	MULTI-MATCH	OvCa9_classI_Rep3	3		2	524.253297	1046.49204	-1.3821	-0.00072459	0.2918	0.00015298	-1.0903	-0.00057161	524.2532286193303	84.054	1.1181	81.793	81.39	82.508	-2.261	-0.078549	0.00016357	NaN	93.143	60	23	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	197310			64329	5224	53038	53088							-0.029345464102334518
YEQFDRILK	9	Unmodified	_YEQFDRILK_					0	0	0			REV__ENST00000481915.5_1_3:32574447-32611850:-|nuORF	REV__ENST00000481915.5_1_3:32574447-32611850:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	606.8462524414062	2	606.324588	1210.63462	-0.075943	-4.6046E-05	-0.27494	-0.0001667	-0.35088	-0.00021275	606.3241655989764	40.761	0.35293	40.761	40.573	40.926	0					12	7	2	0	0	0	0.027462	1	2492	2492		19.997	0	1	76959	+		64330	19922	53039	53089	70788	70788					0.03773086051796781
YEQILNTKL	9	Unmodified	_YEQILNTKL_					0	0	0		ENSG00000174574|ENST00000432648|AKIRIN1	ENSG00000174574|ENST00000432648|AKIRIN1	ENSG00000174574|ENST00000432648|AKIRIN1	MULTI-MSMS	OvCa99_classI_Rep5	1	561.3146362304688	2	561.313689	1120.61282	2.0827	0.0011691	0.30084	0.00016887	2.3836	0.0013379	561.3136869042404	90.719	0.82839	90.719	90.504	91.332	0					42	20	3	0	0	0	0.044408	1	9745	9745		122.94	18.516	1	2998000			64331	7476	53040	53090	70789	70789					0.05734281303239186
YEQILNTKL	9	Unmodified	_YEQILNTKL_					0	0	0		ENSG00000174574|ENST00000432648|AKIRIN1	ENSG00000174574|ENST00000432648|AKIRIN1	ENSG00000174574|ENST00000432648|AKIRIN1	MULTI-MSMS	OvCa9_classI_Rep2	2	561.3124389648438	2	561.313689	1120.61282	1.5797	0.00088669	-1.2834	-0.00072039	0.29626	0.0001663	561.3129515367051	91.362	1.6751	90.126	89.439	91.114	-1.2355					98	31	5	0	0	0	0.023935	2	8095	8089;8095		142.36	19.422	1	506420			64332	7476	53040	53090	70790;70791	70791					0.05734281303239186
YEQILNTKL	9	Unmodified	_YEQILNTKL_					0	0	0		ENSG00000174574|ENST00000432648|AKIRIN1	ENSG00000174574|ENST00000432648|AKIRIN1	ENSG00000174574|ENST00000432648|AKIRIN1	MULTI-MSMS	OvCa9_classI_Rep3	3	561.3150634765625	2	561.313689	1120.61282	-1.4205	-0.00079735	0.60683	0.00034062	-0.81368	-0.00045673	561.3139694591338	92.035	0.82211	90.011	89.584	90.406	-2.0241					47	16	4	0	0	0	0.010844	2	5803	5803;5810		166.07	20.611	1	847440			64333	7476	53040	53090	70792;70793	70792					0.05734281303239186
YEQILNTKL	9	Unmodified	_YEQILNTKL_					0	0	0		ENSG00000174574|ENST00000432648|AKIRIN1	ENSG00000174574|ENST00000432648|AKIRIN1	ENSG00000174574|ENST00000432648|AKIRIN1	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.314697265625	2	561.313689	1120.61282	0.35354	0.00019845	0.069059	3.8764E-05	0.4226	0.00023721	561.3137048403495	92.493	1.0616	89.95	89.517	90.578	-2.5425					59	20	4	0	0	0	0.070626	3	8034	8026;8034;8048		106.88	17.851	1	833850			64334	7476	53040	53090	70794;70795;70796	70795					0.05734281303239186
YEQLLDVKL	9	Unmodified	_YEQLLDVKL_					0	0	0		ENST00000504788.5_1_5:126112928-126171953:+|nuORF;ENSG00000113368|ENST00000261366|LMNB1;LMNB1|p.E568Tfs*24|1|0.43|ENSG00000113368|chr5:126832782-126832783|-/GACTCTGTCTCCAAAAAAAGGGATGAATAAT|frameshift_variant	ENST00000504788.5_1_5:126112928-126171953:+|nuORF	ENST00000504788.5_1_5:126112928-126171953:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	560.815673828125	2	560.816064	1119.61758	1.5744	0.00088294	-4.1362	-0.0023197	-2.5619	-0.0014367	560.8147892542197	114.95	1.358	113.56	113.3	114.66	-1.3977					51	26	4	0	0	0	0.084152	2	10688	10688;10703		101.46	0	1	175860			64335	2969	53041	53091	70797;70798	70797					0.06255165445986677
YEQLLDVKL	9	Unmodified	_YEQLLDVKL_					0	0	0		ENST00000504788.5_1_5:126112928-126171953:+|nuORF;ENSG00000113368|ENST00000261366|LMNB1;LMNB1|p.E568Tfs*24|1|0.43|ENSG00000113368|chr5:126832782-126832783|-/GACTCTGTCTCCAAAAAAAGGGATGAATAAT|frameshift_variant	ENST00000504788.5_1_5:126112928-126171953:+|nuORF	ENST00000504788.5_1_5:126112928-126171953:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	560.816064	1119.61758	0.65925	0.00036972	-2.2474	-0.0012604	-1.5882	-0.00089068	560.8152193934609	113.95	1.085	113.83	113.57	114.65	-0.11777	0.1638	-0.0010819	NaN	101.46	27	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	135980			64336	2969	53041	53091							0.06255165445986677
YEQLLDVKL	9	Unmodified	_YEQLLDVKL_					0	0	0		ENST00000504788.5_1_5:126112928-126171953:+|nuORF;ENSG00000113368|ENST00000261366|LMNB1;LMNB1|p.E568Tfs*24|1|0.43|ENSG00000113368|chr5:126832782-126832783|-/GACTCTGTCTCCAAAAAAAGGGATGAATAAT|frameshift_variant	ENST00000504788.5_1_5:126112928-126171953:+|nuORF	ENST00000504788.5_1_5:126112928-126171953:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	560.816064	1119.61758	-0.44471	-0.0002494	-0.32712	-0.00018346	-0.77184	-0.00043286	560.8158965835908	114.68	1.3323	113.62	113.35	114.69	-1.055	-0.048788	0.001072	NaN	101.46	47	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142690			64337	2969	53041	53091							0.06255165445986677
YEQLRDIAI	9	Unmodified	_YEQLRDIAI_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF;ENST00000485950.1_1_22:21153332-21156304:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	OvCa9_classI_Rep3	3	560.8050537109375	2	560.803488	1119.59242	0.74763	0.00041927	-0.19889	-0.00011154	0.54874	0.00030773	560.8032406363295	113.08	1.9194	112.01	111.66	113.58	-1.0753					84	37	3	0	0	0	0.68424	1	8299	8299		21.96	0	1	455470			64338	9359	53042	53092	70799	70799					0.03741110643409229
YEQTIVFPGS	10	Unmodified	_YEQTIVFPGS_					0	0	0		nc|ENSG00000064393|Q9H2X6-2|HIPK2;nc|ENSG00000064393|Q9H2X6-3|HIPK2;ENSG00000064393|ENST00000406875|HIPK2;HIPK2|p.I875Nfs*8|1|0.04|ENSG00000064393|chr7:139596812-139596813|-/ATTTTTTAAGACCAACATGATTC|frameshift_variant;HIPK2|p.K132*|1|0.04|ENSG00000064393|chr7:139716641-139716642|-/TA|frameshift_variant	nc|ENSG00000064393|Q9H2X6-2|HIPK2	nc|ENSG00000064393|Q9H2X6-2|HIPK2	MULTI-MSMS	OvCa9_classI_Rep2	2	570.7803344726562	2	570.782222	1139.54989	-0.2596	-0.00014818	0.21453	0.00012245	-0.045071	-2.5726E-05	570.7820177377638	92.55	2.0234	91.382	90.866	92.889	-1.168					86	38	4	0	0	0	0.37436	1	8257	8257		71.877	13.096	1	326650			64339	1299	53043	53093	70800	70800					-0.01430284484808908
YEQTIVFPGS	10	Unmodified	_YEQTIVFPGS_					0	0	0		nc|ENSG00000064393|Q9H2X6-2|HIPK2;nc|ENSG00000064393|Q9H2X6-3|HIPK2;ENSG00000064393|ENST00000406875|HIPK2;HIPK2|p.I875Nfs*8|1|0.04|ENSG00000064393|chr7:139596812-139596813|-/ATTTTTTAAGACCAACATGATTC|frameshift_variant;HIPK2|p.K132*|1|0.04|ENSG00000064393|chr7:139716641-139716642|-/TA|frameshift_variant	nc|ENSG00000064393|Q9H2X6-2|HIPK2	nc|ENSG00000064393|Q9H2X6-2|HIPK2	MULTI-MSMS	OvCa9_classI_Rep4_	4	570.7805786132812	2	570.782222	1139.54989	-0.43825	-0.00025014	-0.37946	-0.00021659	-0.81771	-0.00046673	570.7817593054085	93.787	1.6089	91.28	90.863	92.472	-2.5072					82	33	3	0	0	0	0.48398	1	8208	8208		56.434	1.3499	1	669460			64340	1299	53043	53093	70801	70801					-0.01430284484808908
YEQYRQFQRRK	11	Unmodified	_YEQYRQFQRRK_					0	0	0		nc|ENSG00000196562|Q8IWU5-2|SULF2;ENSG00000196562|ENST00000688720|SULF2	nc|ENSG00000196562|Q8IWU5-2|SULF2	nc|ENSG00000196562|Q8IWU5-2|SULF2	MULTI-SECPEP	OvCa99_classI_Rep5	1	534.777587890625	3	534.614696	1600.82226	0.46117	0.00024655	1.5766	0.00084285	2.0377	0.0010894	534.6156910885462	72.052	0.24792	72.052	71.877	72.125	0					7	5	2	0	0	0	0.02642	1	6976	6976		14.694	5.4819	1	215030			64341	8626	53044	53094	70802	70802					0.045879173090497716
YERSNEYQL	9	Unmodified	_YERSNEYQL_					0	0	0		DLGAP1-GNAS|20|fusion;DLGAP1-GNAS|17|fusion;DLGAP1-GNAS|18|fusion;DLGAP1-GNAS|19|fusion;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;DLGAP1-GNAS|21|fusion;DLGAP1-GNAS|14|fusion;DLGAP1-GNAS|15|fusion;ENSG00000087460|ENST00000371085|GNAS;DLGAP1-GNAS|23|fusion;SETD3-GNAS|1|fusion;SETD3-GNAS|4|fusion;DLGAP1-GNAS|3|fusion;SETD3-GNAS|2|fusion;SETD3-GNAS|3|fusion;nc|ENSG00000087460|P63092-4|GNAS;CADM1-GNAS|4|fusion;DLGAP1-GNAS|24|fusion;DLGAP1-GNAS|11|fusion;DLGAP1-GNAS|2|fusion;nc|ENSG00000087460|P63092-2|GNAS;DLGAP1-GNAS|10|fusion;DLGAP1-GNAS|13|fusion;DLGAP1-GNAS|16|fusion;DLGAP1-GNAS|1|fusion;DLGAP1-GNAS|4|fusion;DLGAP1-GNAS|7|fusion;DLGAP1-GNAS|9|fusion;DLGAP1-GNAS|6|fusion;DLGAP1-GNAS|12|fusion;DLGAP1-GNAS|5|fusion;DLGAP1-GNAS|8|fusion;DLGAP1-GNAS|22|fusion;CADM1-GNAS|1|fusion;SDCCAG8-GNAS|2|fusion;nc|ENSG00000087460|P63092-3|GNAS;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;SDCCAG8-GNAS|4|fusion;SDCCAG8-GNAS|1|fusion;CADM1-GNAS|2|fusion;CADM1-GNAS|3|fusion;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;SDCCAG8-GNAS|3|fusion;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000487981.5_1_20:57478601-57484479:+|nuORF;ENST00000494081.5_1_20:57478601-57480533:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS	DLGAP1-GNAS|20|fusion;nc|ENSG00000087460|Q5JWF2-2|GNAS	DLGAP1-GNAS|20|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	601.2774658203125	2	601.277835	1200.54112	-0.11447	-6.8827E-05	0.12973	7.8002E-05	0.015259	9.175E-06	601.2778647112226	64.826	2.288	62.102	61.598	63.886	-2.7245					125	44	5	0	0	0	0.018335	5	4954	4950;4954;4961;4969;4975		148.99	48.572	1	769190			64342	739;14909	53045	53095	70803;70804;70805;70806;70807	70804					-0.0511325812128689
YERSNEYQL	9	Unmodified	_YERSNEYQL_					0	0	0		DLGAP1-GNAS|20|fusion;DLGAP1-GNAS|17|fusion;DLGAP1-GNAS|18|fusion;DLGAP1-GNAS|19|fusion;ENST00000477931.5_1_20:57464155-57485881:+|nuORF;DLGAP1-GNAS|21|fusion;DLGAP1-GNAS|14|fusion;DLGAP1-GNAS|15|fusion;ENSG00000087460|ENST00000371085|GNAS;DLGAP1-GNAS|23|fusion;SETD3-GNAS|1|fusion;SETD3-GNAS|4|fusion;DLGAP1-GNAS|3|fusion;SETD3-GNAS|2|fusion;SETD3-GNAS|3|fusion;nc|ENSG00000087460|P63092-4|GNAS;CADM1-GNAS|4|fusion;DLGAP1-GNAS|24|fusion;DLGAP1-GNAS|11|fusion;DLGAP1-GNAS|2|fusion;nc|ENSG00000087460|P63092-2|GNAS;DLGAP1-GNAS|10|fusion;DLGAP1-GNAS|13|fusion;DLGAP1-GNAS|16|fusion;DLGAP1-GNAS|1|fusion;DLGAP1-GNAS|4|fusion;DLGAP1-GNAS|7|fusion;DLGAP1-GNAS|9|fusion;DLGAP1-GNAS|6|fusion;DLGAP1-GNAS|12|fusion;DLGAP1-GNAS|5|fusion;DLGAP1-GNAS|8|fusion;DLGAP1-GNAS|22|fusion;CADM1-GNAS|1|fusion;SDCCAG8-GNAS|2|fusion;nc|ENSG00000087460|P63092-3|GNAS;ENST00000480975.5_1_20:57464272-57485881:+|nuORF;SDCCAG8-GNAS|4|fusion;SDCCAG8-GNAS|1|fusion;CADM1-GNAS|2|fusion;CADM1-GNAS|3|fusion;ENST00000371075.7_3_20:57415898-57485881:+|nuORF;ENST00000313949.11_1_20:57415898-57485881:+|nuORF;SDCCAG8-GNAS|3|fusion;ENST00000476196.5_1_20:57478538-57485881:+|nuORF;ENST00000496934.5_1_20:57473969-57485881:+|nuORF;ENST00000487981.5_1_20:57478601-57484479:+|nuORF;ENST00000494081.5_1_20:57478601-57480533:+|nuORF;nc|ENSG00000087460|Q5JWF2-2|GNAS;nc|ENSG00000087460|Q5JWF2|GNAS	DLGAP1-GNAS|20|fusion;nc|ENSG00000087460|Q5JWF2-2|GNAS	DLGAP1-GNAS|20|fusion	MULTI-MSMS	OvCa9_classI_Rep4_	4	601.27880859375	2	601.277835	1200.54112	0.005918	3.5584E-06	-0.52339	-0.0003147	-0.51747	-0.00031115	601.2775291813537	65.496	3.1742	62.011	61.599	64.774	-3.4854					158	64	5	0	0	0	0.0078313	7	4706	4706;4718;4730;4742;4755;4768;4780		180.87	70.75	1	4030900			64343	739;14909	53045	53095	70808;70809;70810;70811;70812;70813;70814	70808					-0.0511325812128689
YESKVFYL	8	Unmodified	_YESKVFYL_					0	0	0		ENSG00000170027|ENST00000307630|YWHAG;ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF	ENSG00000170027|ENST00000307630|YWHAG;ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	OvCa99_classI_Rep5	1	524.772705078125	2	524.771126	1047.5277	3.0062	0.0015776	-0.69945	-0.00036705	2.3068	0.0012105	524.7705880086522	97.699	0.72696	97.699	97.479	98.206	0					37	16	3	0	0	0	0.34187	1	10734	10734		99.375	36.069	1	3281000			64344	3868;7066	53046	53096	70815	70815					0.005835358374270072
YESKVFYL	8	Unmodified	_YESKVFYL_					0	0	0		ENSG00000170027|ENST00000307630|YWHAG;ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF	ENSG00000170027|ENST00000307630|YWHAG;ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	OvCa9_classI_Rep2	2	524.769775390625	2	524.771126	1047.5277	-0.70487	-0.0003699	1.0146	0.00053246	0.30977	0.00016256	524.7711176589954	99.329	2.4811	98.498	98.119	100.6	-0.83052					140	49	4	0	0	0	0.14547	5	9042	9037;9042;9046;9052;9058		133.81	53.873	1	555820			64345	3868;7066	53046	53096	70816;70817;70818;70819;70820	70817					0.005835358374270072
YESKVFYL	8	Unmodified	_YESKVFYL_					0	0	0		ENSG00000170027|ENST00000307630|YWHAG;ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF	ENSG00000170027|ENST00000307630|YWHAG;ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	OvCa9_classI_Rep3	3	524.7728881835938	2	524.771126	1047.5277	-1.0591	-0.0005558	-0.012331	-6.471E-06	-1.0715	-0.00056227	524.7706074090678	100.23	2.6393	98.621	98.117	100.76	-1.6053					125	51	4	0	0	0	0.12224	7	6773	6770;6773;6780;6785;6793;6799;6811		138.24	58.303	1	713110			64346	3868;7066	53046	53096	70821;70822;70823;70824;70825;70826;70827	70822					0.005835358374270072
YESKVFYL	8	Unmodified	_YESKVFYL_					0	0	0		ENSG00000170027|ENST00000307630|YWHAG;ENSG00000128245|ENST00000248975|YWHAH;ENST00000397492.1_1_22:32346295-32352776:+|nuORF	ENSG00000170027|ENST00000307630|YWHAG;ENSG00000128245|ENST00000248975|YWHAH	ENSG00000128245|ENST00000248975|YWHAH	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.7713012695312	2	524.771126	1047.5277	-1.4232	-0.00074687	1.1146	0.00058489	-0.30866	-0.00016197	524.7712041872209	100.77	2.8914	98.501	97.978	100.87	-2.2665					127	56	4	0	0	0	0.083813	3	9021	9010;9021;9032		147.69	70.847	1	672280			64347	3868;7066	53046	53096	70828;70829;70830	70829					0.005835358374270072
YESPGKIFL	9	Unmodified	_YESPGKIFL_					0	0	0		nc|ENSG00000129534|Q6P0N0-2|MIS18BP1;ENSG00000129534|ENST00000310806|MIS18BP1	nc|ENSG00000129534|Q6P0N0-2|MIS18BP1	nc|ENSG00000129534|Q6P0N0-2|MIS18BP1	MULTI-MSMS	OvCa99_classI_Rep5	1	527.2861328125	2	527.2844	1052.55425	1.5076	0.00079491	0.87181	0.00045969	2.3794	0.0012546	527.2847414692535	98.415	1.2394	98.415	98.037	99.276	0					53	29	3	0	0	0	0.12515	1	10838	10838		90.37	27.064	1	1174300			64348	3933	53047	53097	70831	70831					0.030072247287534992
YESSGEHESL	10	Unmodified	_YESSGEHESL_					0	0	0		nc|ENSG00000078018|P11137-3|MAP2;ENSG00000078018|ENST00000682079|MAP2	nc|ENSG00000078018|P11137-3|MAP2	nc|ENSG00000078018|P11137-3|MAP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	569.3367919921875	2	569.238375	1136.4622	3.1291	0.0017812	4.205	0.0023937	7.3341	0.0041749	569.2402533060679	135.32	0.54453	133.77	133.56	134.1	-1.5437					17	10	3	0	0	0	0.026849	1	13081	13081		49.442	8.8689	1	14226			64349	1581	53048	53098	70832	70832					-0.10057530146218596
YETKTALL	8	Unmodified	_YETKTALL_					0	0	0		nc|ENSG00000100242|Q9UH99-3|SUN2;ENSG00000100242|ENST00000689035|SUN2;nc|ENSG00000100242|Q9UH99-2|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	nc|ENSG00000100242|Q9UH99-3|SUN2	MULTI-MSMS	OvCa99_classI_Rep5	1	469.7648620605469	2	469.7633	937.512048	0.063098	2.9641E-05	0.27337	0.00012842	0.33647	0.00015806	469.763227540937	71.059	0.78882	71.059	70.8	71.589	0					52	19	4	0	0	0	0.48084	1	6871	6871		79.451	16.145	1	4655200			64350	2033	53049	53099	70833	70833					0.0407924932038668
YEVEAKYEL	9	Unmodified	_YEVEAKYEL_					0	0	0		tr|A0A7D6ZVP6|A0A7D6ZVP6_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=HZF06_05010PE=4SV=1	tr|A0A7D6ZVP6|A0A7D6ZVP6_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=HZF06_05010PE=4SV=1	tr|A0A7D6ZVP6|A0A7D6ZVP6_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=HZF06_05010PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	572.2825927734375	2	572.282054	1142.54956	-1.2364	-0.00070756	0.79125	0.00045282	-0.44513	-0.00025474	572.2823750627892	100.58	1.8921	98.311	97.978	99.87	-2.2665					97	37	5	0	0	0	0.27001	1	9003	9003		66.429	0.96389	1	775740			64351	35807	53050	53100	70834	70834					-0.016017042046541974
YEVFGPSN	8	Unmodified	_YEVFGPSN_					0	0	0			REV__nc|ENSG00000095261|Q16401-2|PSMD5	REV__nc|ENSG00000095261|Q16401-2|PSMD5	MULTI-SECPEP	OvCa9_classI_Rep3	3	456.3009033203125	2	456.708525	911.402498	-0.41616	-0.00019006	-1.6695	-0.00076245	-2.0856	-0.00095252	456.7076954416562	88.434	0.50148	86.303	86.009	86.51	-2.1309					13	9	2	0	0	0	0.028476	1	5360	5360		30.504	11.144	1	10331	+		64352	17285	53051	53101	70835	70835					-0.05674756298947159
YEVKSSLI	8	Unmodified	_YEVKSSLI_					0	0	0			REV__tr|A0A7D6VML0|A0A7D6VML0_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_12065PE=4SV=1	REV__tr|A0A7D6VML0|A0A7D6VML0_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_12065PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	469.7646789550781	2	469.7633	937.512048	0.063098	2.9641E-05	0.27337	0.00012842	0.33647	0.00015806	469.763227540937	71.059	0.78882	71.059	70.8	71.589	0					52	19	4	0	0	0	0.38598	1	6841	6841		90.777	0	1	4655200	+		64353	31136	53052	53102	70836	70836					0.0407924932038668
YEVKSSLI	8	Unmodified	_YEVKSSLI_					0	0	0			REV__tr|A0A7D6VML0|A0A7D6VML0_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_12065PE=4SV=1	REV__tr|A0A7D6VML0|A0A7D6VML0_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_12065PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	469.7633	937.512048	-0.36189	-0.00017	0.68683	0.00032265	0.32494	0.00015265	469.7633689001943	73.642	1.0504	71.242	70.687	71.738	-2.3999	-0.014209	0.00040874	NaN	90.777	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39477	+		64354	31136	53052	53102							0.0407924932038668
YEVKSSLI	8	Unmodified	_YEVKSSLI_					0	0	0			REV__tr|A0A7D6VML0|A0A7D6VML0_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_12065PE=4SV=1	REV__tr|A0A7D6VML0|A0A7D6VML0_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_12065PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	469.7633	937.512048	0.3016	0.00014168	-0.38253	-0.0001797	-0.080935	-3.802E-05	469.76287211581155	74.698	1.1103	71.467	71.095	72.205	-3.2308	0.21123	-0.00059595	NaN	90.777	44	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	114240	+		64355	31136	53052	53102							0.0407924932038668
YEVLALIIA	9	Unmodified	_YEVLALIIA_					0	0	0			REV__tr|A0A553SQU8|A0A553SQU8_NIACIConjugaltransferproteinOS=NialliacirculansOX=1397GN=CEQ21_07300PE=3SV=1	REV__tr|A0A553SQU8|A0A553SQU8_NIACIConjugaltransferproteinOS=NialliacirculansOX=1397GN=CEQ21_07300PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	502.8072204589844	2	502.804968	1003.59538	2.5495	0.0012819	4.4707	0.0022479	7.0203	0.0035298	502.80707536973654	26.202	0.53641	23.493	23.343	23.88	-2.7097					18	11	2	0	0	0	0.64339	1	350	350		26.796	8.4717	1	40133	+		64356	30665	53053	53103	70837	70837					0.09372985768231956
YEYKFGFEL	9	Unmodified	_YEYKFGFEL_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;TXNIP|p.E165Rfs*11|1|0.2|ENSG00000265972|chr1:145995010-145995011|-/T|frameshift_variant	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	OvCa99_classI_Rep5	1	598.2882690429688	2	598.28714	1194.55973	1.6926	0.0010127	0.082947	4.9626E-05	1.7756	0.0010623	598.2871383405475	122.94	1.1093	122.94	122.68	123.79	0					80	23	6	0	0	0	0.066102	3	14199	14150;14174;14199		109.48	44.013	1	7660600			64357	9525	53054	53104	70838;70839;70840	70840					-0.029770964794124666
YFASRYPQC	9	Unmodified	_YFASRYPQC_					0	0	0			REV__nc|ENSG00000219481|Q3BBV0|NBPF1;REV__ENSG00000270629|ENST00000619423|NBPF14	REV__nc|ENSG00000219481|Q3BBV0|NBPF1	MULTI-SECPEP	OvCa9_classI_Rep2	2	567.806640625	2	567.755484	1133.49641	-0.96861	-0.00054993	3.3225	0.0018864	2.3539	0.0013365	567.7561669953241	69.111	0.29868	66.49	66.266	66.565	-2.6203					7	5	2	0	0	0	0.027461	1	5469	5469		49.442	15.269	1	9727	+		64358	23333;23605	53055	53105	70841	70841					-0.06499360468319537
YFCLLLLV	8	Unmodified	_YFCLLLLV_					0	0	0			REV__ENST00000550006.1_1_12:80014983-80083760:-|nuORF	REV__ENST00000550006.1_1_12:80014983-80083760:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	492.28472900390625	2	492.285357	982.556161	-2.2796	-0.0011222	2.1905	0.0010784	-0.089042	-4.3834E-05	492.2864131588537	149.81	0.85445	148.38	148.07	148.93	-1.4344					41	16	4	0	0	0	0.7363	1	14776	14776		33.493	0	1	96209	+		64359	27462	53056	53106	70842	70842					0.06418562213025325
YFCPVKIGTLG	11	Unmodified	_YFCPVKIGTLG_					0	0	0			REV__chr5:133067557-133073230|118|11.08|0.39|4.83|+|0|HSPA4,HSPA4|1	REV__chr5:133067557-133073230|118|11.08|0.39|4.83|+|0|HSPA4,HSPA4|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	599.7724609375	2	599.32046	1196.62637	1.5608	0.00093544	-3.288	-0.0019705	-1.7271	-0.0010351	599.3190576797535	130.85	0.95148	130.85	130.48	131.43	0					40	13	5	0	0	0	0.025265	1	15145	15145		60.118	14.166	1	149130	+		64360	16060	53057	53107	70843	70843					0.03591815810841581
YFERNWEPRRD	11	Unmodified	_YFERNWEPRRD_					0	0	0		ENSG00000185453|ENST00000614654|ZSWIM9;nc|ENSG00000185453|Q86XI8|ZSWIM9	ENSG00000185453|ENST00000614654|ZSWIM9	ENSG00000185453|ENST00000614654|ZSWIM9	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.814453125	3	523.251534	1566.73277	1.0252	0.00053643	-0.96426	-0.00050455	0.060928	3.1881E-05	523.2524677756636	107.11	0.12627	107.11	107.02	107.14	0					4	2	2	0	0	0	0.026497	1	12070	12070		9.6461	3.3253	1	85709			64361	8254	53058	53108	70844	70844					-0.02792337370306086
YFFRGLFS	8	Unmodified	_YFFRGLFS_					0	0	0		ENST00000547809.5_1_12:105570964-105626916:-|nuORF	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	ENST00000547809.5_1_12:105570964-105626916:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	518.7664794921875	2	518.766178	1035.5178	0.94588	0.00049069	0.95448	0.00049515	1.9004	0.00098584	518.7665329992748	130.86	0.713	130.86	130.63	131.34	0					30	14	3	0	0	0	0.67745	1	15186	15186		47.916	5.5195	1	241130			64362	13554	53059	53109	70845	70845					0.0014639262271884945
YFGSAFATPF	10	Unmodified	_YFGSAFATPF_					0	0	0		ENSG00000127184|ENST00000247655|COX7C;ENST00000511472.5_1_5:85913768-85915283:+|nuORF	ENSG00000127184|ENST00000247655|COX7C	ENSG00000127184|ENST00000247655|COX7C	MSMS	OvCa99_classI_Rep5	1	554.2630615234375	2	554.260925	1106.5073	NaN	NaN	NaN	NaN	NaN	NaN	NaN	143.62	1	143.62	143.12	144.12	0								0	0	0	0.11992	1	16786	16786		60.972	2.742	1				64363	3821	53060	53110	70846	70846					-0.041696348224149915
YFGVRFFE	8	Unmodified	_YFGVRFFE_					0	0	0			REV__DOCK4|p.F1456Lfs*4|1|0.11|ENSG00000128512|chr7:111755521-111755536|ACGCTTTTCCACTTCA/-|frameshift_variant;REV__DOCK3|p.K1465Pfs*18|1|0.29|ENSG00000088538|chr3:51356230-51356231|-/TCCCCTCACCTTTCACACACAGCTTCCTTGGGGACCA|frameshift_variant	REV__DOCK3|p.K1465Pfs*18|1|0.29|ENSG00000088538|chr3:51356230-51356231|-/TCCCCTCACCTTTCACACACAGCTTCCTTGGGGACCA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	532.7627563476562	2	532.763635	1063.51272	1.0974	0.00058466	-1.8405	-0.00098054	-0.74306	-0.00039588	532.7625104763312	113.64	2.2165	112.57	112.01	114.22	-1.0753					113	43	4	0	0	0	0.66704	1	8352	8352		50.025	10.772	1	496900	+		64364	16329;16330	53061	53111	70847	70847					-0.016499112399060323
YFHPPAHL	8	Unmodified	_YFHPPAHL_					0	0	0		PCCA-MBNL2|3|fusion;PCCA-MBNL2|1|fusion;nc|ENSG00000139793|Q5VZF2-2|MBNL2;nc|ENSG00000076770|Q9NUK0-5|MBNL3;ENSG00000139793|ENST00000679496|MBNL2;nc|ENSG00000152601|Q9NR56|MBNL1;ENSG00000152601|ENST00000324210|MBNL1;nc|ENSG00000139793|Q5VZF2|MBNL2;nc|ENSG00000152601|Q9NR56-2|MBNL1;ENST00000460166.1_1_3:152132852-152173345:+|nuORF;nc|ENSG00000152601|Q9NR56-6|MBNL1;nc|ENSG00000152601|Q9NR56-7|MBNL1;nc|ENSG00000076770|Q9NUK0-2|MBNL3;nc|ENSG00000152601|Q9NR56-4|MBNL1;nc|ENSG00000076770|Q9NUK0-3|MBNL3;nc|ENSG00000152601|Q9NR56-3|MBNL1;nc|ENSG00000076770|Q9NUK0-4|MBNL3;ENSG00000076770|ENST00000370853|MBNL3;nc|ENSG00000139793|Q5VZF2-3|MBNL2;PCCA-MBNL2|2|fusion;PCCA-MBNL2|4|fusion	PCCA-MBNL2|3|fusion;nc|ENSG00000139793|Q5VZF2-3|MBNL2	PCCA-MBNL2|3|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	491.2522277832031	2	491.250695	980.486836	-0.3722	-0.00018284	-0.054297	-2.6673E-05	-0.42649	-0.00020952	491.25060301909963	56.396	0.98642	56.396	55.932	56.918	0					60	23	4	0	0	0	0.64315	1	4675	4675		54.895	17.083	1	1300500			64365	15050;15051	53062	53112	70848	70848					-0.004187606915365905
YFHSSYKYFTW	11	Unmodified	_YFHSSYKYFTW_					0	0	0		ENST00000463805.5_1_5:56206045-56208856:+|nuORF;ENST00000472636.5_1_5:56206045-56206902:+|nuORF	ENST00000463805.5_1_5:56206045-56208856:+|nuORF	ENST00000463805.5_1_5:56206045-56208856:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	509.30035400390625	3	510.23471	1527.6823	-0.27429	-0.00013995	-1.0561	-0.00053885	-1.3304	-0.0006788	510.2340167961132	35.409	1.0283	35.409	34.632	35.661	0					36	21	4	0	0	0	0.026448	1	1752	1752		13.508	6.1082	1	345230			64366	12235	53063	53113	70849	70849					-0.060432597480257755
YFICQKLD	8	Unmodified	_YFICQKLD_					0	0	0			REV__tr|A0A7D6VSN8|A0A7D6VSN8_9CLOTABC3transporterpermeaseproteindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13645PE=4SV=1	REV__tr|A0A7D6VSN8|A0A7D6VSN8_9CLOTABC3transporterpermeaseproteindomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13645PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.803955078125	2	515.257328	1028.5001	2.5051	0.0012908	-4.4221	-0.0022785	-1.917	-0.00098774	515.2551917059974	96.304	0.46936	96.304	95.869	96.338	0					12	10	2	0	0	0	0.028476	1	10510	10510		28.254	5.2118	1	187490	+		64367	31525	53064	53114	70850	70850					-0.013006906944610819
YFIDLSSAEL	10	Unmodified	_YFIDLSSAEL_					0	0	0			REV__tr|A0A7D6VQN5|A0A7D6VQN5_9CLOTCof-typeHAD-IIBfamilyhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21850PE=4SV=1	REV__tr|A0A7D6VQN5|A0A7D6VQN5_9CLOTCof-typeHAD-IIBfamilyhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21850PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	579.289306640625	2	579.289879	1156.56521	-1.5543	-0.00090038	1.1936	0.00069144	-0.36069	-0.00020894	579.2904358994801	100.97	1.2389	100.2	99.923	101.16	-0.764					72	24	4	0	0	0	0.43592	1	9259	9259		63.306	6.5852	1	334770	+		64368	31342	53065	53115	70851	70851					-0.0068141768761051935
YFIDLSSAEL	10	Unmodified	_YFIDLSSAEL_					0	0	0			REV__tr|A0A7D6VQN5|A0A7D6VQN5_9CLOTCof-typeHAD-IIBfamilyhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21850PE=4SV=1	REV__tr|A0A7D6VQN5|A0A7D6VQN5_9CLOTCof-typeHAD-IIBfamilyhydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21850PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.2903442382812	2	579.289879	1156.56521	-0.65118	-0.00037722	0.58867	0.00034101	-0.062512	-3.6213E-05	579.2900765258487	102.42	1.2593	100.22	99.937	101.2	-2.1994					72	23	5	0	0	0	0.35697	1	9213	9213		73.975	2.679	1	370090	+		64369	31342	53065	53115	70852	70852					-0.0068141768761051935
YFISHILAF	9	Unmodified	_YFISHILAF_					0	0	0		nc|ENSG00000048392|Q7LG56-2|RRM2B;ENSG00000048392|ENST00000251810|RRM2B;nc|ENSG00000048392|Q7LG56-6|RRM2B;RRM2B|p.G200Ifs*22|1|0.22|ENSG00000048392|chr8:102218899-102218900|CC/-|frameshift_variant	nc|ENSG00000048392|Q7LG56-2|RRM2B	nc|ENSG00000048392|Q7LG56-2|RRM2B	MULTI-MSMS	OvCa99_classI_Rep5	1	555.8038330078125	2	555.80276	1109.59097	2.0942	0.001164	1.0019	0.00055684	3.0961	0.0017208	555.8030276450017	136.3	1.1882	136.3	136.02	137.21	0					45	24	4	0	0	0	0.25214	2	15894	15871;15894		68.485	18.46	1	251530			64370	1155	53066	53116	70853;70854	70854					0.04055521345321722
YFIVWVLYIII	11	Unmodified	_YFIVWVLYIII_					0	0	0			REV__tr|A0A7D6VXX3|A0A7D6VXX3_9CLOTYcxBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14365PE=4SV=1	REV__tr|A0A7D6VXX3|A0A7D6VXX3_9CLOTYcxBfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_14365PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	481.2828674316406	3	481.287975	1440.8421	-6.6786	-0.0032143	-2.5501	-0.0012273	-9.2287	-0.0044416	481.2868612614486	161.01	3.7232	159.65	158.49	162.21	-1.3523					206	77	3	0	0	0	0.72538	1	13942	13942		10.587	0.4829	1	127690	+		64371	31795	53067	53117	70855	70855					0.13930900267155266
YFKKRFIKLYP	11	Unmodified	_YFKKRFIKLYP_					0	0	0		tr|A0A7D6VNL6|A0A7D6VNL6_9CLOTAcyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13080PE=4SV=1	tr|A0A7D6VNL6|A0A7D6VNL6_9CLOTAcyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13080PE=4SV=1	tr|A0A7D6VNL6|A0A7D6VNL6_9CLOTAcyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13080PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	501.6350402832031	3	501.634257	1501.88094	-5.5214	-0.0027697	4.4581	0.0022364	-1.0632	-0.00053336	501.63683746014317	159.89	2.7041	159.67	158.29	160.99	-0.22697					138	54	3	0	0	0	0.72573	1	16267	16267		6.001	2.382	1	33161			64372	34714	53068	53118	70856	70856					0.15007625621501575
YFKSKALISG	10	Unmodified	_YFKSKALISG_					0	0	0			REV__nc|ENSG00000091039|Q9BZF1-3|OSBPL8	REV__nc|ENSG00000091039|Q9BZF1-3|OSBPL8	MULTI-MSMS	OvCa9_classI_Rep2	2	557.3167724609375	2	557.318774	1112.623	-1.9914	-0.0011099	-0.89828	-0.00050063	-2.8897	-0.0016105	557.3181775816473	36.131	1.4315	33.421	33.152	34.583	-2.7097					66	28	4	0	0	0	0.71173	1	1542	1542		29.17	3.596	1	384370	+		64373	17239	53069	53119	70857	70857					0.07118889028470221
YFKYDNRQALI	11	Unmodified	_YFKYDNRQALI_					0	0	0		tr|A0A7D6VVY0|A0A7D6VVY0_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_06935PE=4SV=1	tr|A0A7D6VVY0|A0A7D6VVY0_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_06935PE=4SV=1	tr|A0A7D6VVY0|A0A7D6VVY0_9CLOTMerRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_06935PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	478.2953796386719	3	477.585743	1429.7354	0.056261	2.6869E-05	0.03816	1.8225E-05	0.094421	4.5094E-05	477.5857224442916	97.381	0.79881	95.621	95.311	96.11	-1.7595					27	15	2	0	0	0	0.026321	1	6506	6506		20.03	8.9337	1	53800			64374	35238	53070	53120	70858	70858					0.037721180346579786
YFLAKEHSI	9	Unmodified	_YFLAKEHSI_					0	0	0			REV__tr|A0A553SL45|A0A553SL45_NIACISporecoatproteinCotJCOS=NialliacirculansOX=1397GN=CEQ21_19930PE=3SV=1	REV__tr|A0A553SL45|A0A553SL45_NIACISporecoatproteinCotJCOS=NialliacirculansOX=1397GN=CEQ21_19930PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	553.3091430664062	2	554.295299	1106.57605	-1.0981	-0.00060867	-2.6015	-0.001442	-3.6995	-0.0020506	554.2938281017997	62.517	1.5491	59.758	59.386	60.935	-2.7584					49	29	4	0	0	0	0.027462	1	4741	4741		35.618	7.736	1	136390	+		64375	30185	53071	53121	70859	70859					0.027020294773365094
YFLDNLIV	8	Unmodified	_YFLDNLIV_					0	0	0		ENSG00000138459|ENST00000492406|SLC35A5;SLC35A5|p.G179Wfs*20|1|0.05|ENSG00000138459|chr3:112580650-112580651|-/A|frameshift_variant;SLC35A5|p.Q239Wfs*19|1|0.06|ENSG00000138459|chr3:112580831-112580832|-/TGGGAGGA|frameshift_variant	ENSG00000138459|ENST00000492406|SLC35A5	ENSG00000138459|ENST00000492406|SLC35A5	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.77301025390625	2	498.773668	995.532783	-0.76756	-0.00038284	-3.7703	-0.0018805	-4.5379	-0.0022634	498.77172605039726	91.582	1.517	89.04	88.76	90.277	-2.5425					55	29	3	0	0	0	0.64026	1	7928	7928		55.504	2.1528	1	434810			64376	4690	53072	53122	70860	70860					0.034838397000498844
YFLKGVLVF	9	Unmodified	_YFLKGVLVF_					0	0	0		ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	ENSG00000031698|ENST00000234677|SARS1	MULTI-MSMS	OvCa99_classI_Rep5	1	543.3245239257812	2	543.323328	1084.6321	1.803	0.0009796	0.8863	0.00048155	2.6893	0.0014611	543.3236420308658	136.05	2.1344	136.05	135.73	137.87	0					82	44	4	0	0	0	0.19716	2	15870	15846;15870		76.847	21.342	1	1307400			64377	1067	53073	53123	70861;70862	70862					0.09317282384790815
YFLLLLAAAIS	11	Unmodified	_YFLLLLAAAIS_					0	0	0		ENST00000440972.1_1_2:65659170-65659719:-|nuORF	ENST00000440972.1_1_2:65659170-65659719:-|nuORF	ENST00000440972.1_1_2:65659170-65659719:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8568725585938	2	597.860275	1193.706	-2.7036	-0.0016164	-3.9017	-0.0023327	-6.6053	-0.0039491	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.70148	1	12365	12365		29.15	3.5755	1	591030			64378	11925	53074	53124	70863	70863					0.11689205756465526
YFLTLFDQT	9	Unmodified	_YFLTLFDQT_					0	0	0			REV__chr9:34635721-34636997|101|62.03|0.05|10.26|-|0|None,SIGMAR1|1	REV__chr9:34635721-34636997|101|62.03|0.05|10.26|-|0|None,SIGMAR1|1	MULTI-MSMS	OvCa9_classI_Rep2	2	574.29052734375	2	574.28714	1146.55973	2.2976	0.0013195	3.0261	0.0017378	5.3237	0.0030573	574.2887813624243	26.093	0.82673	23.383	23.246	24.073	-2.7097					33	20	3	0	0	0	0.6653	1	329	329		24.203	1.6231	1	76649	+		64379	16125	53075	53125	70864	70864					-0.007690964794619504
YFMGIIPIPV	10	Unmodified	_YFMGIIPIPV_					0	0	0		tr|A0A7D6ZHM1|A0A7D6ZHM1_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_03485PE=4SV=1	tr|A0A7D6ZHM1|A0A7D6ZHM1_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_03485PE=4SV=1	tr|A0A7D6ZHM1|A0A7D6ZHM1_9CLOTPTStransportersubunitEIICOS=ClostridiumintestinaleOX=36845GN=HZF06_03485PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	575.3261108398438	2	575.322471	1148.63039	1.52	0.00087449	3.6803	0.0021173	5.2003	0.0029918	575.3244526025719	134.93	1.1264	134.93	134.61	135.73	0					61	24	4	0	0	0	0.5794	1	15701	15701		44.531	2.1349	1	1496800			64380	35580	53076	53126	70865	70865					0.06201905304533284
YFMIPFFF	8	Unmodified	_YFMIPFFF_					0	0	0		ENST00000414373.5_1_11:118967985-118971732:-|nuORF;nc|ENSG00000172269|Q9H3H5-3|DPAGT1;ENST00000392834.7_1_11:118967710-118972378:-|nuORF;nc|ENSG00000172269|Q9H3H5-2|DPAGT1;ENSG00000172269|ENST00000354202|DPAGT1;ENST00000533687.1_1_11:118969111-118971155:-|nuORF	ENST00000414373.5_1_11:118967985-118971732:-|nuORF	ENST00000414373.5_1_11:118967985-118971732:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	556.2730102539062	2	556.269707	1110.52486	1.3401	0.00074546	1.3902	0.00077333	2.7303	0.0015188	556.2703298502786	61.128	1.3911	58.06	57.54	58.931	-3.0685					61	39	2	0	0	0	0.7363	1	2090	2090		33.493	5.6107	1	29839			64381	7287	53077	53127	70866	70866					-0.02598010821088792
YFPDLFPTPC	10	Unmodified	_YFPDLFPTPC_					0	0	0		nc|ENSG00000106410|O60393-2|NOBOX;ENSG00000106410|ENST00000467773|NOBOX	nc|ENSG00000106410|O60393-2|NOBOX	nc|ENSG00000106410|O60393-2|NOBOX	MULTI-MSMS	OvCa9_classI_Rep4_	4	600.2728881835938	2	600.275718	1198.53688	-5.913	-0.0035494	-0.2071	-0.00012431	-6.1201	-0.0036737	600.2754165352742	160.39	2.7294	158.78	158.34	161.07	-1.6101					180	65	4	0	0	0	0.71192	1	15936	15936		29.15	0	1	309270			64382	2550	53078	53128	70867	70867					-0.054444388685396916
YFPRYLQS	8	Unmodified	_YFPRYLQS_					0	0	0			REV__ENST00000412976.1_1_10:65929632-65930097:-|nuORF	REV__ENST00000412976.1_1_10:65929632-65930097:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	537.295654296875	2	537.274367	1072.53418	-2.1119	-0.0011347	4.4058	0.0023671	2.2939	0.0012324	537.7780779205259	61.603	0.47173	58.844	58.515	58.987	-2.7593					11	8	2	0	0	0	0.028476	1	4554	4554		37.159	22.294	1	7866	+		64383	16421	53079	53129	70868	70868					0.0008147378880494216
YFQTLVIL	8	Unmodified	_YFQTLVIL_					0	0	0		ENST00000355774.6_2_14:75497265-75497367:-|nuORF	ENST00000355774.6_2_14:75497265-75497367:-|nuORF	ENST00000355774.6_2_14:75497265-75497367:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	498.7899475097656	2	498.791861	995.569169	-0.82368	-0.00041084	-3.8314	-0.0019111	-4.6551	-0.0023219	498.78992392916325	116.11	3.0188	115.07	114.6	117.62	-1.0414					179	60	5	0	0	0	0.50674	1	8644	8644		76.847	2.5916	1	2745900			64384	10684	53080	53130	70869	70869					0.07120716596762122
YFQYRQLN	8	Unmodified	_YFQYRQLN_					0	0	0		ENST00000521189.1_1_8:62212560-62289213:+|nuORF;nc|ENSG00000177182|Q8IUQ0-2|CLVS1;ENSG00000177182|ENST00000325897|CLVS1	ENST00000521189.1_1_8:62212560-62289213:+|nuORF	ENST00000521189.1_1_8:62212560-62289213:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.2572021484375	2	566.282723	1130.55089	2.2179	0.001256	-0.13162	-7.4534E-05	2.0863	0.0011814	566.2817602936601	78.118	0.61366	78.118	77.884	78.498	0					28	14	3	0	0	0	0.028476	1	7872	7872		20.482	9.6163	1	365300			64385	7666	53081	53131	70870	70870					-0.009160253252503026
YFRELARDHQS	11	Unmodified	_YFRELARDHQS_					0	0	0			REV__ENSG00000152684|ENST00000274311|PELO	REV__ENSG00000152684|ENST00000274311|PELO	MULTI-SECPEP	OvCa99_classI_Rep5	1	474.5515441894531	3	474.568863	1420.68476	-0.59198	-0.00028094	-2.6485	-0.0012569	-3.2405	-0.0015378	474.5679365290794	37.585	0.18266	37.585	37.485	37.668	0					5	3	2	0	0	0	0.026277	1	2069	2069		17.833	7.2463	1	15922	+		64386	20299	53082	53132	70871	70871					-0.008754112903488931
YFRIINRVL	9	Unmodified	_YFRIINRVL_					0	0	0			REV__tr|A0A553SJC0|A0A553SJC0_NIACIAI-2EfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_16545PE=3SV=1	REV__tr|A0A553SJC0|A0A553SJC0_NIACIAI-2EfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_16545PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	597.356689453125	2	597.361308	1192.70806	-5.0217	-0.0029997	0.45711	0.00027306	-4.5646	-0.0027267	597.3613502692024	157	0.93945	156.78	156.54	157.48	-0.22696					63	26	4	0	0	0	0.71234	1	16011	16011		13.775	0.81615	1	80526	+		64387	29991	53083	53133	70872	70872					0.11941679284950624
YFRMMKSYNIF	11	Unmodified	_YFRMMKSYNIF_					0	0	0		tr|A0A7D6VN23|A0A7D6VN23_9CLOTDUF1186domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17140PE=4SV=1	tr|A0A7D6VN23|A0A7D6VN23_9CLOTDUF1186domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17140PE=4SV=1	tr|A0A7D6VN23|A0A7D6VN23_9CLOTDUF1186domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17140PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	500.5794982910156	3	500.577314	1498.71011	-0.32512	-0.00016275	1.7994	0.00090075	1.4743	0.00073801	500.57825299754865	42.898	0.60493	42.898	42.665	43.27	0					41	13	5	0	0	0	0.72488	1	2790	2790		17.167	0	1	1605000			64388	34675	53084	53134	70873	70873					-0.01929396083755819
YFRSPHLE	8	Unmodified	_YFRSPHLE_					0	0	0			REV__ENSG00000187510|ENST00000344636|PLEKHG7	REV__ENSG00000187510|ENST00000344636|PLEKHG7	MSMS	OvCa9_classI_Rep4_	4	524.7655029296875	2	524.764166	1047.51378	NaN	NaN	NaN	NaN	NaN	NaN	NaN	129.69	1	128.23	127.73	128.73	-1.4565								0	0	0	0.30129	1	12425	12425		38.806	1.647	1		+		64389	22642	53085	53135	70874	70874					-0.008076968710156507
YFSFIEKN	8	Unmodified	_YFSFIEKN_					0	0	0			REV__tr|A0A7D6VXV1|A0A7D6VXV1_9CLOTDNA-bindingresponseregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_14160PE=4SV=1	REV__tr|A0A7D6VXV1|A0A7D6VXV1_9CLOTDNA-bindingresponseregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_14160PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.772705078125	2	524.260925	1046.5073	2.684	0.0014071	-1.0682	-0.00056003	1.6158	0.00084708	524.260109556455	97.375	0.60347	97.375	97.135	97.738	0					21	13	2	0	0	0	0.028476	1	10734	10734		45.952	0	1	1384800	+		64390	31792	53086	53136	70875	70875					-0.01409634822357475
YFSLEKIFK	9	Unmodified	_YFSLEKIFK_					0	0	0		ENST00000473914.1_1_5:96332105-96341995:+|nuORF;nc|ENSG00000113441|Q9UIQ6-3|LNPEP;nc|ENSG00000113441|Q9UIQ6-2|LNPEP;ENSG00000113441|ENST00000231368|LNPEP	ENST00000473914.1_1_5:96332105-96341995:+|nuORF	ENST00000473914.1_1_5:96332105-96341995:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	587.8311157226562	2	587.828975	1173.6434	1.8788	0.0011044	0.19935	0.00011718	2.0781	0.0012216	587.8292012202365	27.905	0.50635	25.195	25.036	25.543	-2.7097					14	10	3	0	0	0	0.71696	1	528	528		12.207	0	1	16155			64391	2972	53087	53137	70876	70876					0.06352059688265399
YFSTVKIIY	9	Unmodified	_YFSTVKIIY_					0	0	0		ENSG00000106128|ENST00000326139|GHRHR	ENSG00000106128|ENST00000326139|GHRHR	ENSG00000106128|ENST00000326139|GHRHR	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3153686523438	2	567.3157	1132.61685	2.0704	0.0011746	-2.7712	-0.0015721	-0.70074	-0.00039754	567.3139739099872	57.536	1.95	54.41	53.788	55.738	-3.1264					89	52	3	0	0	0	0.35444	1	1702	1702		56.721	7.2795	1	66904			64392	2532	53088	53138	70877	70877					0.05584370796964322
YFVKELQSLV	10	Unmodified	_YFVKELQSLV_					0	0	0			REV__ENSG00000151151|ENST00000373935|IPMK	REV__ENSG00000151151|ENST00000373935|IPMK	MULTI-SECPEP	OvCa99_classI_Rep5	1	614.2932739257812	2	613.344989	1224.67542	1.3203	0.00080977	-2.9269	-0.0017952	-1.6066	-0.0009854	613.3436121753967	145.05	0.53041	145.05	144.79	145.32	0					22	10	3	0	0	0	0.027088	1	16934	16934		34.173	15.069	1	127520	+		64393	20220	53089	53139	70878	70878					0.07207427371417907
YFVLSYLS	8	Unmodified	_YFVLSYLS_					0	0	0		OR4X1|p.F60V|1|0.34|ENSG00000176567|chr11:48264038-48264038|T/G|missense_variant	OR4X1|p.F60V|1|0.34|ENSG00000176567|chr11:48264038-48264038|T/G|missense_variant	OR4X1|p.F60V|1|0.34|ENSG00000176567|chr11:48264038-48264038|T/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.24688720703125	2	496.260394	990.506234	-1.2952	-0.00064276	2.9119	0.0014451	1.6167	0.00080229	496.26129312757683	43.692	0.12891	43.692	43.608	43.737	0					4	2	2	0	0	0	0.028476	1	2892	2892		33.516	0	1	19337			64394	15458	53090	53140	70879	70879					0.010601508087120237
YFVPHTKRY	9	Unmodified	_YFVPHTKRY_					0	0	0		ENST00000419821.6_1_12:118693456-118704503:-|nuORF	ENST00000419821.6_1_12:118693456-118704503:-|nuORF	ENST00000419821.6_1_12:118693456-118704503:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	404.21759033203125	3	404.217102	1209.62948	1.2969	0.00052421	-1.2352	-0.00049928	0.061682	2.4933E-05	404.2165786914444	46.762	1.7026	46.762	46.501	48.204	0					99	38	5	0	0	0	0.13504	2	3311	3311;3334		87.696	41.24	1	10139000			64395	11659	53091	53141	70880;70881	70880					0.03304826979842801
YFVPHTKRY	9	Unmodified	_YFVPHTKRY_					0	0	0		ENST00000419821.6_1_12:118693456-118704503:-|nuORF	ENST00000419821.6_1_12:118693456-118704503:-|nuORF	ENST00000419821.6_1_12:118693456-118704503:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	605.8225708007812	2	605.822015	1209.62948	0.1956	0.0001185	-0.27532	-0.0001668	-0.079725	-4.8299E-05	605.8217456660451	46.755	0.91999	46.755	46.545	47.465	0					59	20	4	0	0	0	0.13326	2	3338	3313;3338		71.877	35.455	1	2598700			64396	11659	53091	53141	70882;70883	70883					0.03304826979842801
YFVPLHSFF	9	Unmodified	_YFVPLHSFF_					0	0	0		ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	ENSG00000197702|ENST00000334956|PARVA	MSMS	OvCa99_classI_Rep5	1	578.796630859375	2	578.794935	1155.57532	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.19	1	136.19	135.69	136.69	0								0	0	0	0.028249	1	15875	15875		114.59	53.614	1				64397	8737	53092	53142	70884	70884					0.0037523482828873966
YFVPLVKRL	9	Unmodified	_YFVPLVKRL_					0	0	0		nc|ENSG00000137713|P30154-4|PPP2R1B;ENSG00000137713|ENST00000527614|PPP2R1B;nc|ENSG00000137713|P30154-2|PPP2R1B;nc|ENSG00000137713|P30154-3|PPP2R1B	nc|ENSG00000137713|P30154-4|PPP2R1B	nc|ENSG00000137713|P30154-4|PPP2R1B	MULTI-MSMS	OvCa99_classI_Rep5	1	567.8567504882812	2	567.855327	1133.6961	2.5701	0.0014595	-0.021586	-1.2258E-05	2.5485	0.0014472	567.855161173975	94.851	0.68661	94.851	94.517	95.204	0					40	15	4	0	0	0	0.19716	1	10327	10327		76.847	32.469	1	1247700			64398	4608	53093	53143	70885	70885					0.1346006254175336
YFYALGAFF	9	Unmodified	_YFYALGAFF_					0	0	0			REV__ENSG00000198121|ENST00000683809|LPAR1	REV__ENSG00000198121|ENST00000683809|LPAR1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	549.304931640625	2	549.768386	1097.52222	-1.7416	-0.00095746	-1.0025	-0.00055114	-2.7441	-0.0015086	550.2687830696195	119.43	0.51843	118.09	117.83	118.35	-1.3444					12	9	2	0	0	0	0.027462	1	11226	11226		39.021	9.18	1	9166.9	+		64399	22990	53094	53144	70886	70886					-0.022641429543909908
YFYLFPNRL	9	Unmodified	_YFYLFPNRL_					0	0	0		ENSG00000173020|ENST00000308595|GRK2;ENST00000416281.6_1_11:67049840-67052918:+|nuORF;ENSG00000100077|ENST00000324198|GRK3;ENST00000524899.1_1_11:67051750-67052658:+|nuORF	ENSG00000173020|ENST00000308595|GRK2	ENSG00000173020|ENST00000308595|GRK2	MULTI-MSMS	OvCa99_classI_Rep5	1	617.3294677734375	2	616.826766	1231.63898	1.3857	0.00085472	0.49317	0.0003042	1.8788	0.0011589	616.8270018501855	130.54	0.76382	130.54	130.2	130.96	0					34	15	3	0	0	0	0.36502	1	15163	15163		55.504	7.5886	1	296040			64400	7343	53095	53145	70887	70887					0.03242595265373893
YGAGKSVHVL	10	Unmodified	_YGAGKSVHVL_					0	0	0		nc|ENSG00000121940|Q96S66-4|CLCC1;nc|ENSG00000121940|Q96S66-3|CLCC1;nc|ENSG00000121940|Q96S66-2|CLCC1;ENSG00000121940|ENST00000369969|CLCC1	nc|ENSG00000121940|Q96S66-4|CLCC1	nc|ENSG00000121940|Q96S66-4|CLCC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7872314453125	2	515.787641	1029.56073	0.6162	0.00031783	-0.30048	-0.00015498	0.31572	0.00016285	515.7872216200942	34.731	1.4032	31.943	31.648	33.051	-2.7881					67	27	4	0	0	0	0.52321	1	1085	1085		51.335	1.3109	1	298250			64401	3507	53096	53146	70888	70888					0.04713162680127425
YGALINMF	8	Oxidation (M)	_YGALINM(Oxidation (M))F_		YGALINM(1)F		YGALINM(78)F	0	0	1			REV__nc|ENSG00000172350|Q9H172-4|ABCG4	REV__nc|ENSG00000172350|Q9H172-4|ABCG4	MULTI-MSMS	OvCa99_classI_Rep5	1	472.7306823730469	2	472.730946	943.447339	1.2249	0.00057905	-2.1728	-0.0010272	-0.94793	-0.00044811	472.7297673561503	91.014	1.1802	91.014	90.656	91.837	0					72	28	4	0	0	0	0.49583	2	9762	9762;9820		77.944	9.4591	1	6735700	+		64402	21692	53097	53147	70889;70890	70889		505			-0.026646487572634214
YGCSLLLCTL	10	Unmodified	_YGCSLLLCTL_					0	0	0			REV__ENST00000522684.5_2_8:141668930-141669017:-|nuORF	REV__ENST00000522684.5_2_8:141668930-141669017:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	543.3230590820312	2	543.272121	1084.52969	0.92554	0.00050282	4.0837	0.0022186	5.0092	0.0027214	543.2742392516841	119.79	0.73843	118.77	118.48	119.22	-1.0271					18	14	2	0	0	0	0.027147	1	9152	9152		15.642	0.77694	1	11118	+		64403	27087	53098	53148	70891	70891					-0.009194947406058418
YGCSLLLCTL	10	Unmodified	_YGCSLLLCTL_					0	0	0			REV__ENST00000522684.5_2_8:141668930-141669017:-|nuORF	REV__ENST00000522684.5_2_8:141668930-141669017:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	543.272121	1084.52969	-1.7933	-0.00097425	6.5381	0.003552	4.7448	0.0025777	543.7776988586389	120.09	0.576	118.74	118.51	119.08	-1.3444	-0.010926	0.0015205	NaN	20.947	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12729	+		64404	27087	53098	53148							-0.009194947406058418
YGDVVLRHIG	10	Unmodified	_YGDVVLRHIG_					0	0	0		ENST00000461176.1_1_7:100224226-100225153:-|nuORF;ENST00000465294.5_1_7:100218482-100225153:-|nuORF;nc|ENSG00000106327|Q9UP52-2|TFR2;ENST00000476304.5_1_7:100218482-100231271:-|nuORF;nc|ENSG00000106327|Q9UP52-3|TFR2;ENSG00000106327|ENST00000223051|TFR2	ENST00000461176.1_1_7:100224226-100225153:-|nuORF	ENST00000461176.1_1_7:100224226-100225153:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	564.8102416992188	2	564.811648	1127.60874	-2.1858	-0.0012346	0.12689	7.1666E-05	-2.0589	-0.0011629	564.8115908604212	146.02	1.2908	145.8	145.33	146.62	-0.22697					59	25	3	0	0	0	0.73378	1	14729	14729		26.693	3.6504	1	117310			64405	2541	53099	53149	70892	70892					0.05004236600166223
YGEEWEKRYYE	11	Unmodified	_YGEEWEKRYYE_					0	0	0		tr|A0A7D6VP00|A0A7D6VP00_9CLOTRibonucleoside-diphosphatereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21075PE=3SV=1	tr|A0A7D6VP00|A0A7D6VP00_9CLOTRibonucleoside-diphosphatereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21075PE=3SV=1	tr|A0A7D6VP00|A0A7D6VP00_9CLOTRibonucleoside-diphosphatereductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_21075PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.3259887695312	3	517.896534	1550.66777	-1.0259	-0.0005313	2.7296	0.0014136	1.7037	0.00088234	517.8980621626001	69.767	1.3112	66.285	66.057	67.369	-3.4812					79	26	5	0	0	0	0.026364	1	5339	5339		13.508	0	1	388370			64406	34741	53100	53150	70893	70893					-0.08553376686768388
YGEGGRIL	8	Unmodified	_YGEGGRIL_					0	0	0		nc|ENSG00000150275|Q96QU1-4|PCDH15;nc|ENSG00000150275|Q96QU1-6|PCDH15;ENSG00000150275|ENST00000644397|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15;nc|ENSG00000150275|Q96QU1-2|PCDH15;ENST00000463095.2_1_10:55581620-55664971:-|nuORF	nc|ENSG00000150275|Q96QU1-4|PCDH15;nc|ENSG00000150275|Q96QU1|PCDH15	nc|ENSG00000150275|Q96QU1-4|PCDH15	MULTI-MSMS	OvCa9_classI_Rep2	2	432.73272705078125	2	432.732335	863.450116	-1.2078	-0.00052263	1.49	0.00064479	0.28228	0.00012215	432.73281308349294	53.901	1.3434	51.087	50.578	51.922	-2.8139					53	26	3	0	0	0	0.68714	1	3679	3679		45.952	2.3259	1	138710			64407	15089;15090	53101	53151	70894	70894					0.012929426919072284
YGEIFEKF	8	Unmodified	_YGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	OvCa99_classI_Rep5	1	516.7567138671875	2	516.755475	1031.4964	-1.4636	-0.00075632	-0.80966	-0.0004184	-2.2733	-0.0011747	516.7549065318656	103.67	0.978	103.67	103.39	104.36	0					53	22	4	0	0	0	0.59308	1	11604	11604		65.465	2.1591	1	1526500			64408	5549	53102	53152	70895	70895					-0.018090371966763996
YGEIFEKF	8	Unmodified	_YGEIFEKF_					0	0	0		nc|ENSG00000151366|O95298-2|NDUFC2;ENSG00000151366|ENST00000281031|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	nc|ENSG00000151366|O95298-2|NDUFC2	MULTI-MSMS	OvCa99_classI_Rep5	1	516.7571411132812	2	516.755475	1031.4964	1.8416	0.00095164	0.43443	0.0002245	2.276	0.0011761	516.7555030790477	108.32	1.9159	108.32	107.94	109.86	0					106	43	4	0	0	0	0.42405	3	12278	12220;12252;12278		85.161	33.825	1	1427300			64409	5549	53102	53152	70896;70897;70898	70898					-0.018090371966763996
YGFSSGNF	8	Unmodified	_YGFSSGNF_					0	0	0		ENSG00000221866|ENST00000321063|PLXNA4;nc|ENSG00000221866|Q9HCM2-2|PLXNA4;nc|ENSG00000221866|Q9HCM2-3|PLXNA4	ENSG00000221866|ENST00000321063|PLXNA4	ENSG00000221866|ENST00000321063|PLXNA4	MULTI-MSMS	OvCa99_classI_Rep5	1	439.68939208984375	2	439.687593	877.360633	0.98228	0.0004319	-1.0025	-0.0004408	-0.020249	-8.9034E-06	439.6871293088541	58.595	2.6621	58.595	58.322	60.984	0					118	66	5	0	0	0	0.7043	1	4974	4974		42.474	0.078325	1	28451000			64410	9231	53103	53153	70899	70899					-0.08295311987455989
YGGLVKIIKE	10	Unmodified	_YGGLVKIIKE_					0	0	0		tr|A0A7D6VPH5|A0A7D6VPH5_9CLOTflagellarbiosynthesisproteinFlhFOS=ClostridiumintestinaleOX=36845GN=flhFPE=3SV=1	tr|A0A7D6VPH5|A0A7D6VPH5_9CLOTflagellarbiosynthesisproteinFlhFOS=ClostridiumintestinaleOX=36845GN=flhFPE=3SV=1	tr|A0A7D6VPH5|A0A7D6VPH5_9CLOTflagellarbiosynthesisproteinFlhFOS=ClostridiumintestinaleOX=36845GN=flhFPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	560.3394165039062	2	560.342249	1118.66995	-7.144	-0.0040031	3.6168	0.0020266	-3.5273	-0.0019765	560.3441648343594	161.4	2.0053	160.03	159.58	161.59	-1.3692					105	41	5	0	0	0	0.7759	1	14069	14069		21.96	3.6978	1	475740			64411	34770	53104	53154	70900	70900					0.11535748579603933
YGGMPTVVNV	10	Unmodified	_YGGMPTVVNV_					0	0	0		ENSG00000140943|ENST00000343411|MBTPS1	ENSG00000140943|ENST00000343411|MBTPS1	ENSG00000140943|ENST00000343411|MBTPS1	MULTI-MSMS	OvCa99_classI_Rep5	1	518.7631225585938	2	518.760235	1035.50592	1.4502	0.00075232	0.87015	0.0004514	2.3204	0.0012037	518.7604999535904	118.45	0.89486	118.45	118.11	119.01	0					51	18	4	0	0	0	0.58282	1	13561	13561		44.117	1.6423	1	384050			64412	4880	53105	53155	70901	70901					-0.010415921827870989
YGGPIINKAL	10	Unmodified	_YGGPIINKAL_					0	0	0			REV__tr|A0A553SNH0|A0A553SNH0_NIACISensordomain-containingdiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_24490PE=4SV=1	REV__tr|A0A553SNH0|A0A553SNH0_NIACISensordomain-containingdiguanylatecyclaseOS=NialliacirculansOX=1397GN=CEQ21_24490PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3036499023438	2	523.305667	1044.59678	-0.69596	-0.0003642	-3.2951	-0.0017244	-3.9911	-0.0020886	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.76627	1	13870	13870		23.042	0	1	130240	+		64413	30424	53106	53156	70902	70902					0.07626619856978323
YGGWRPDQF	9	Unmodified	_YGGWRPDQF_					0	0	0		tr|A0A7D6ZFJ2|A0A7D6ZFJ2_9CLOTFibronectintypeIIIdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18125PE=4SV=1	tr|A0A7D6ZFJ2|A0A7D6ZFJ2_9CLOTFibronectintypeIIIdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18125PE=4SV=1	tr|A0A7D6ZFJ2|A0A7D6ZFJ2_9CLOTFibronectintypeIIIdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18125PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.2063598632812	2	563.259248	1124.50394	2.2217	0.0012514	3.1831	0.0017929	5.4048	0.0030443	563.2617518695317	110.95	0.43987	110.95	110.76	111.2	0					17	9	3	0	0	0	0.027433	1	12600	12600		60.972	0.67798	1	86878			64414	35511	53107	53157	70903	70903					-0.053328848764067516
YGHFCLCP	8	Unmodified	_YGHFCLCP_					0	0	0		ENST00000537771.1_1_11:73105464-73105626:+|nuORF	ENST00000537771.1_1_11:73105464-73105626:+|nuORF	ENST00000537771.1_1_11:73105464-73105626:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	469.7882385253906	2	470.196216	938.37788	0.45913	0.00021588	-2.1584	-0.0010149	-1.6993	-0.00079899	470.1949948070914	57.967	0.30372	54.622	54.495	54.799	-3.3449					7	5	2	0	0	0	0.028476	1	3791	3791		33.493	23.308	1	12893			64415	13411	53108	53158	70904	70904					-0.09377430977690437
YGHTKGLLL	9	Unmodified	_YGHTKGLLL_					0	0	0		ENSG00000137976|ENST00000370665|DNASE2B	ENSG00000137976|ENST00000370665|DNASE2B	ENSG00000137976|ENST00000370665|DNASE2B	MULTI-MSMS	OvCa9_classI_Rep3	3	501.28948974609375	2	501.292559	1000.57057	-1.4695	-0.00073667	-2.6975	-0.0013522	-4.167	-0.0020889	501.29102518822737	136.02	4.5079	134.92	133.77	138.27	-1.1076					228	91	4	0	0	0	0.63422	1	11187	11187		27.882	2.3082	1	97838			64416	4642	53109	53159	70905	70905					0.07030350685522535
YGHVIIATK	9	Unmodified	_YGHVIIATK_					0	0	0			REV__tr|A0A7D6VU47|A0A7D6VU47_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00380PE=4SV=1	REV__tr|A0A7D6VU47|A0A7D6VU47_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00380PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	501.29052734375	2	501.292559	1000.57057	-0.80197	-0.00040202	-3.5119	-0.0017605	-4.3139	-0.0021625	501.2906816095173	135.63	4.8104	135.4	133.71	138.52	-0.22697					221	98	3	0	0	0	0.62352	1	13613	13613		29.15	2.3535	1	70595	+		64417	31649	53110	53160	70906	70906					0.07030350685533904
YGIEHALAL	9	Unmodified	_YGIEHALAL_					0	0	0		ENST00000497393.1_1_3:120469390-120469879:+|nuORF;ENSG00000153767|ENST00000283875|GTF2E1	ENST00000497393.1_1_3:120469390-120469879:+|nuORF	ENST00000497393.1_1_3:120469390-120469879:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	493.76953125	2	493.768917	985.523281	1.9088	0.00094249	0.98408	0.00048591	2.8928	0.0014284	493.76896039283315	100.22	0.66936	100.22	99.939	100.61	0					22	15	2	0	0	0	0.22961	1	11119	11119		71.296	2.5089	1	3078400			64418	5690	53111	53161	70907	70907					0.029940714145027414
YGILAIATSLK	11	Unmodified	_YGILAIATSLK_					0	0	0			REV__nc|ENSG00000107331|Q9BZC7|ABCA2	REV__nc|ENSG00000107331|Q9BZC7|ABCA2	MULTI-MSMS	OvCa9_classI_Rep4_	4	575.3446044921875	2	575.347532	1148.68051	-5.0623	-0.0029126	1.2187	0.00070115	-3.8436	-0.0022114	575.3482262989531	155.36	0.8739	153.87	153.58	154.45	-1.4911					58	23	3	0	0	0	0.72473	1	15380	15380		19.104	1.7386	1	87893	+		64419	17843	53112	53162	70908	70908					0.1121173123403878
YGISARLLGL	10	Unmodified	_YGISARLLGL_					0	0	0			REV__ENST00000507765.1_1_4:6290695-6304192:+|nuORF	REV__ENST00000507765.1_1_4:6290695-6304192:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	531.817626953125	2	531.818941	1061.62333	0.089047	4.7357E-05	-3.7428	-0.0019905	-3.6538	-0.0019431	531.8167336373293	139.66	4.7743	138.17	136.76	141.54	-1.4952					339	94	5	0	0	0	0.6349	1	13729	13729		37.812	0	1	263230	+		64420	17933	53113	53163	70909	70909					0.09498308748334239
YGIVFGIIGVL	11	Unmodified	_YGIVFGIIGVL_					0	0	0		tr|A0A7D6VSX9|A0A7D6VSX9_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10970PE=3SV=1	tr|A0A7D6VSX9|A0A7D6VSX9_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10970PE=3SV=1	tr|A0A7D6VSX9|A0A7D6VSX9_9CLOTSporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10970PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.843017578125	2	575.847167	1149.67978	-2.8608	-0.0016474	-4.0802	-0.0023496	-6.941	-0.0039969	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.69331	1	14624	14624		31.955	4.0726	1	356230			64421	35066	53114	53164	70910	70910					0.11092936585009738
YGIVVIQAR	9	Unmodified	_YGIVVIQAR_					0	0	0		nc|ENSG00000020219|A6NM43|CCT8L1P;ENSG00000198445|ENST00000359963|CCT8L2	nc|ENSG00000020219|A6NM43|CCT8L1P	nc|ENSG00000020219|A6NM43|CCT8L1P	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8038635253906	2	509.805834	1017.59712	-0.41042	-0.00020923	-3.6368	-0.0018541	-4.0473	-0.0020633	509.80385147742913	135.63	5.4501	135.4	133.41	138.86	-0.22696					277	111	4	0	0	0	0.65476	1	13475	13475		25.45	1.2474	1	150140			64422	8819	53115	53165	70911	70911					0.08902039576844345
YGKDFHLI	8	Unmodified	_YGKDFHLI_					0	0	0		nc|ENSG00000198160|Q8N108-19|MIER1;nc|ENSG00000198160|Q8N108-16|MIER1;nc|ENSG00000198160|Q8N108-14|MIER1;nc|ENSG00000198160|Q8N108-18|MIER1;nc|ENSG00000198160|Q8N108-17|MIER1;nc|ENSG00000198160|Q8N108-15|MIER1;nc|ENSG00000198160|Q8N108|MIER1;nc|ENSG00000198160|Q8N108-13|MIER1;ENSG00000198160|ENST00000401041|MIER1	nc|ENSG00000198160|Q8N108-19|MIER1	nc|ENSG00000198160|Q8N108-19|MIER1	MULTI-MSMS	OvCa99_classI_Rep5	1	496.7707214355469	2	496.763635	991.512717	0.65697	0.00032636	1.4653	0.00072789	2.1222	0.0010543	496.76424383679563	81.064	0.586	81.064	80.827	81.413	0					45	13	5	0	0	0	0.50747	1	8335	8335		76.774	16.371	1	2737900			64423	8791	53116	53166	70912	70912					0.01662088760087954
YGKEKGAKII	10	Unmodified	_YGKEKGAKII_					0	0	0			REV__tr|A0A7D7ACF5|A0A7D7ACF5_9CLOTdTDP-4-dehydrorhamnosereductaseOS=ClostridiumintestinaleOX=36845GN=rfbDPE=3SV=1	REV__tr|A0A7D7ACF5|A0A7D7ACF5_9CLOTdTDP-4-dehydrorhamnosereductaseOS=ClostridiumintestinaleOX=36845GN=rfbDPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8301391601562	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.6349	1	11808	11808		37.812	2.1932	1	308210	+		64424	32688	53117	53167	70913	70913					0.10094577919812764
YGKKIQELK	9	Unmodified	_YGKKIQELK_					0	0	0			REV__ENSG00000068366|ENST00000672401|ACSL4	REV__ENSG00000068366|ENST00000672401|ACSL4	MULTI-MSMS	OvCa9_classI_Rep2	2	553.82958984375	2	553.832049	1105.64954	-0.12008	-6.6502E-05	-3.596	-0.0019916	-3.7161	-0.0020581	553.8299276335473	138.55	4.0786	138.32	136.16	140.24	-0.22696					182	83	3	0	0	0	0.6653	1	13703	13703		24.203	0	1	64451	+		64425	16851	53118	53168	70914	70914					0.10094577919790026
YGKLQGLLKS	10	Unmodified	_YGKLQGLLKS_					0	0	0		ENSG00000112992|ENST00000344920|NNT;SUMF1-NNT|1|fusion;SUMF1-NNT|2|fusion	ENSG00000112992|ENST00000344920|NNT	ENSG00000112992|ENST00000344920|NNT	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8311157226562	2	553.832049	1105.64954	-6.2882	-0.0034826	2.8254	0.0015648	-3.4628	-0.0019178	553.8333711088012	162.92	1.2582	161.29	160.56	161.82	-1.6336					55	36	2	0	0	0	0.75313	1	16094	16094		24.519	0	1	44362			64426	2942	53119	53169	70915	70915					0.10094577919812764
YGKVKTPVKS	10	Unmodified	_YGKVKTPVKS_					0	0	0			REV__ENST00000590633.1_1_19:12848319-12856427:+|nuORF	REV__ENST00000590633.1_1_19:12848319-12856427:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8294677734375	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.6349	1	14234	14234		37.812	8.662	1	245610	+		64427	23012	53120	53170	70916	70916					0.10094577919812764
YGLFLNLVI	9	Unmodified	_YGLFLNLVI_					0	0	0			REV__tr|A0A553SS36|A0A553SS36_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02385PE=4SV=1	REV__tr|A0A553SS36|A0A553SS36_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02385PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.2622680664062	2	526.312961	1050.61137	1.5002	0.00078956	4.2562	0.0022401	5.7564	0.0030296	526.3152836258613	128.21	2.2261	128.21	127.36	129.59	0					68	47	3	0	0	0	0.027462	1	14760	14760		33.516	16.151	1	115030	+		64428	30799	53121	53171	70917	70917					0.08808692005118246
YGLFVVSF	8	Unmodified	_YGLFVVSF_					0	0	0		ENSG00000205495|ENST00000380370|OR52J3	ENSG00000205495|ENST00000380370|OR52J3	ENSG00000205495|ENST00000380370|OR52J3	MULTI-SECPEP	OvCa99_classI_Rep5	1	467.23699951171875	2	466.249829	930.485105	-0.30376	-0.00014163	-0.62129	-0.00028968	-0.92505	-0.00043131	466.251160599783	41.331	0.44864	41.331	41.014	41.462	0					12	9	2	0	0	0	0.028476	1	2552	2552		29.842	10.482	1	35880			64429	9074	53122	53172	70918	70918					0.017081854998536983
YGLHRLVV	8	Unmodified	_YGLHRLVV_					0	0	0		nc|ENSG00000169851|O60245|PCDH7;nc|ENSG00000169851|O60245-2|PCDH7;ENSG00000169851|ENST00000695919|PCDH7	nc|ENSG00000169851|O60245|PCDH7	nc|ENSG00000169851|O60245|PCDH7	MULTI-MSMS	OvCa9_classI_Rep4_	4	478.7861633300781	2	478.787444	955.560336	-1.2107	-0.00057965	-3.1443	-0.0015054	-4.3549	-0.0020851	478.7858288212029	146.58	1.5256	145.15	144.7	146.22	-1.4357					68	29	4	0	0	0	0.75724	1	14459	14459		23.037	0	1	466310			64430	7043	53123	53173	70919	70919					0.0807778775093766
YGLKALSASRR	11	Unmodified	_YGLKALSASRR_					0	0	0			REV__ENSG00000141298|ENST00000540801|SSH2	REV__ENSG00000141298|ENST00000540801|SSH2	MULTI-MSMS	OvCa9_classI_Rep3	3	611.354248046875	2	611.356754	1220.69895	-2.3862	-0.0014588	1.1145	0.00068137	-1.2716	-0.00077742	611.3572929291362	147.43	3.7918	146.48	144.56	148.35	-0.9512					254	75	5	0	0	0	0.69455	1	12421	12421		31.53	4.8369	1	250910	+		64431	19725	53124	53174	70920	70920					0.09743285928584555
YGLLIGAVTR	10	Unmodified	_YGLLIGAVTR_					0	0	0			REV__nc|ENSG00000197847|A6NK97|SLC22A20P	REV__nc|ENSG00000197847|A6NK97|SLC22A20P	MULTI-MSMS	OvCa9_classI_Rep2	2	531.816650390625	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.74374	1	14009	14009		25.574	4.6271	1	166960	+		64432	29087	53125	53175	70921	70921					0.09498308748334239
YGLLKFLTVL	10	Unmodified	_YGLLKFLTVL_					0	0	0			REV__ENST00000472067.1_1_7:142991698-142998016:+|nuORF;REV__nc|ENSG00000106144|P42575-2|CASP2	REV__nc|ENSG00000106144|P42575-2|CASP2	MULTI-MSMS	OvCa9_classI_Rep3	3	583.859130859375	2	583.862818	1165.71108	-6.9004	-0.0040289	-0.15251	-8.9045E-05	-7.053	-0.004118	583.8626216517176	154.95	1.1831	153.88	153.56	154.74	-1.073					81	29	4	0	0	0	0.73378	1	13332	13332		26.693	1.2427	1	200380	+		64433	26302;17781	53126	53176	70922	70922					0.13485509619090408
YGLLVSSL	8	Unmodified	_YGLLVSSL_					0	0	0		ENSG00000181291|ENST00000631683|TMEM132E	ENSG00000181291|ENST00000631683|TMEM132E	ENSG00000181291|ENST00000631683|TMEM132E	MULTI-MSMS	OvCa9_classI_Rep2	2	426.24615478515625	2	426.247286	850.48002	-0.93249	-0.00039747	-2.0488	-0.0008733	-2.9813	-0.0012708	426.2463036759244	138.33	1.7168	138.1	137.59	139.3	-0.22696					83	34	3	0	0	0	0.75991	1	13878	13878		21.702	0	1	161940			64434	7924	53127	53177	70923	70923					0.04879881637236849
YGLMQRDFLT	10	Unmodified	_YGLMQRDFLT_					0	0	0		ENST00000310421.4_1_8:67563704-67563773:-|nuORF	ENST00000310421.4_1_8:67563704-67563773:-|nuORF	ENST00000310421.4_1_8:67563704-67563773:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	414.2102966308594	3	415.209508	1242.60669	0.33786	0.00014028	1.6769	0.00069625	2.0147	0.00083653	415.2101099246991	47.899	0.7811	47.899	47.551	48.332	0					42	16	4	0	0	0	0.027138	1	3461	3461		23.378	8.6842	1	1293300			64435	10284	53128	53178	70924	70924					-0.004905601999553255
YGLPSLVVSAK	11	Unmodified	_YGLPSLVVSAK_					0	0	0			REV__LYZL4|p.L9P|1|0.04|ENSG00000157093|chr3:42407226-42407226|A/G|missense_variant	REV__LYZL4|p.L9P|1|0.04|ENSG00000157093|chr3:42407226-42407226|A/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	567.32958984375	2	567.331882	1132.64921	-2.6412	-0.0014984	-1.2123	-0.00068778	-3.8535	-0.0021862	567.3310908608092	141.92	3.9983	140.91	138.91	142.91	-1.0106					224	80	5	0	0	0	0.68757	1	11743	11743		33.922	4.7516	1	127690	+		64436	28636	53129	53179	70925	70925					0.0881915819995811
YGLPVVVKL	9	Unmodified	_YGLPVVVKL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OvCa99_classI_Rep5	1	494.317138671875	2	494.315503	986.616454	2.0231	0.0010001	0.4565	0.00022565	2.4796	0.0012257	494.31555412657514	120.54	0.33818	120.54	120.36	120.7	0					13	7	2	0	0	0	0.14739	1	13858	13858		85.359	37.444	1	639770			64437	6867	53130	53180	70926	70926					0.12260995867757174
YGLPVVVKL	9	Unmodified	_YGLPVVVKL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OvCa9_classI_Rep2	2	494.3152160644531	2	494.315503	986.616454	-1.2965	-0.0006409	1.2745	0.00063	-0.022052	-1.0901E-05	494.31599330426616	119.16	0.88641	118.99	118.71	119.59	-0.17138					39	17	4	0	0	0	0.19716	2	11452	11452;11459		76.847	43.331	1	92720			64438	6867	53130	53180	70927;70928	70927					0.12260995867757174
YGLPVVVKL	9	Unmodified	_YGLPVVVKL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OvCa9_classI_Rep3	3	494.3158264160156	2	494.315503	986.616454	0.72797	0.00035985	-0.94823	-0.00046872	-0.22026	-0.00010888	494.3148627942455	119.95	1.0792	118.92	118.63	119.71	-1.0271					44	21	3	0	0	0	0.14739	2	9127	9127;9134		85.359	50.159	1	149460			64439	6867	53130	53180	70929;70930	70929					0.12260995867757174
YGLPVVVKL	9	Unmodified	_YGLPVVVKL_					0	0	0		ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	ENSG00000168036|ENST00000349496|CTNNB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.3148498535156	2	494.315503	986.616454	-0.99688	-0.00049277	0.90993	0.00044979	-0.086941	-4.2977E-05	494.3158214678864	120.2	0.88425	118.85	118.61	119.5	-1.3444					45	16	4	0	0	0	0.11171	2	11297	11297;11307		94.006	47.104	1	206220			64440	6867	53130	53180	70931;70932	70931					0.12260995867757174
YGLTRKFV	8	Unmodified	_YGLTRKFV_					0	0	0		SLC25A44|p.E95G|1|0.06|ENSG00000160785|chr1:156200131-156200131|A/G|missense_variant	SLC25A44|p.E95G|1|0.06|ENSG00000160785|chr1:156200131-156200131|A/G|missense_variant	SLC25A44|p.E95G|1|0.06|ENSG00000160785|chr1:156200131-156200131|A/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	492.2846984863281	2	492.287277	982.560001	-4.5363	-0.0022332	0.21652	0.00010659	-4.3198	-0.0021266	492.28737227483106	149.34	1.4054	148.39	148.05	149.46	-0.95119					58	27	4	0	0	0	0.7549	1	12642	12642		24.203	2.2429	1	182000			64441	32826	53131	53181	70933	70933					0.06802368031094375
YGMQILRHV	9	Unmodified	_YGMQILRHV_					0	0	0		ENST00000274056.11_1_4:164446871-164446979:-|nuORF	ENST00000274056.11_1_4:164446871-164446979:-|nuORF	ENST00000274056.11_1_4:164446871-164446979:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	559.2684326171875	2	558.802768	1115.59098	1.5315	0.00085579	0.6891	0.00038507	2.2206	0.0012409	558.8030352044312	41.935	0.8387	39.226	39.029	39.868	-2.7097					26	16	3	0	0	0	0.027462	1	2269	2269		31.955	0	1	28409			64442	10014	53132	53182	70934	70934					0.03781198073693304
YGNKTELLV	9	Unmodified	_YGNKTELLV_					0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1;nc|ENSG00000139163|Q9HBU6-2|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	MULTI-MSMS	OvCa9_classI_Rep4_	4	518.788818359375	2	518.787307	1035.56006	-1.0643	-0.00055213	0.37826	0.00019623	-0.68601	-0.00035589	518.7873587636142	80.937	1.7518	78.226	77.954	79.706	-2.7106					55	35	2	0	0	0	0.14855	1	6633	6633		85.161	23.053	1	1005800			64443	4749	53133	53183	70935	70935					0.04370323240414109
YGNKTELLV	9	Unmodified	_YGNKTELLV_					0	0	0		nc|ENSG00000139163|Q9HBU6|ETNK1;ENSG00000139163|ENST00000266517|ETNK1;nc|ENSG00000139163|Q9HBU6-2|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	nc|ENSG00000139163|Q9HBU6|ETNK1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	518.787307	1035.56006	0.39949	0.00020725	-1.1411	-0.00059201	-0.74165	-0.00038476	518.7864499812692	80.288	2.434	77.948	77.257	79.691	-2.3399	-0.13908	-0.00097682	NaN	85.161	76	47	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	785040			64444	4749	53133	53183							0.04370323240414109
YGPKRRLIF	9	Unmodified	_YGPKRRLIF_					0	0	0			REV__chr3:9801750-9803843|105|15.69|0.0|20.58|+|0|None,ARPC4-TTLL3|1	REV__chr3:9801750-9803843|105|15.69|0.0|20.58|+|0|None,ARPC4-TTLL3|1	MULTI-MSMS	OvCa9_classI_Rep3	3	575.3455200195312	2	575.3482	1148.68185	-6.2917	-0.0036199	1.4148	0.00081402	-4.8769	-0.0028059	575.3489585356984	154.97	1.0558	153.9	153.56	154.61	-1.073					68	25	4	0	0	0	0.64339	1	13321	13321		26.796	8.4717	1	137860	+		64445	16048	53134	53184	70936	70936					0.11345410113472099
YGPLKPAKI	9	Unmodified	_YGPLKPAKI_					0	0	0			REV__nc|ENSG00000049540|P15502-11|ELN	REV__nc|ENSG00000049540|P15502-11|ELN	MULTI-SECPEP	OvCa9_classI_Rep3	3	493.31982421875	2	493.805303	985.596052	0.16459	8.1274E-05	-0.20655	-0.00010199	-0.04196	-2.072E-05	493.80528175681627	104.95	0.98792	103.6	103.31	104.3	-1.3482					44	18	3	0	0	0	0.027462	1	7327	7327		45.952	8.1404	1	251250	+		64446	28714	53135	53185	70937	70937					0.10267825207927217
YGPPGPPGRIG	11	Unmodified	_YGPPGPPGRIG_					0	0	0			REV__nc|ENSG00000111799|Q99715-4|COL12A1	REV__nc|ENSG00000111799|Q99715-4|COL12A1	MULTI-MSMS	OvCa9_classI_Rep3	3	534.2833251953125	2	534.285266	1066.55598	-2.0798	-0.0011112	-0.23796	-0.00012714	-2.3177	-0.0012383	534.2851091761327	143.26	1.286	142.27	141.94	143.23	-0.9903					60	25	3	0	0	0	0.70865	1	11935	11935		26.693	3.6504	1	116190	+		64447	18060	53136	53186	70938	70938					0.025362785373772567
YGPVSPIIR	9	Unmodified	_YGPVSPIIR_					0	0	0		ENST00000303115.7_1_5:35874625-35876091:+|nuORF;nc|ENSG00000168685|P16871-4|IL7R;nc|ENSG00000168685|P16871-3|IL7R	ENST00000303115.7_1_5:35874625-35876091:+|nuORF	ENST00000303115.7_1_5:35874625-35876091:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	501.289794921875	2	501.292559	1000.57057	-0.80197	-0.00040202	-3.5119	-0.0017605	-4.3139	-0.0021625	501.2906816095173	135.63	4.8104	135.4	133.71	138.52	-0.22697					221	98	3	0	0	0	0.6653	1	13679	13679		24.203	4.8428	1	70595			64448	10209	53137	53187	70939	70939					0.07030350685533904
YGRAALSRKSL	11	Unmodified	_YGRAALSRKSL_					0	0	0			REV__ENSG00000168806|ENST00000305641|LCMT2	REV__ENSG00000168806|ENST00000305641|LCMT2	MULTI-MSMS	OvCa9_classI_Rep3	3	611.356201171875	2	611.356754	1220.69895	-3.1571	-0.0019301	2.0725	0.001267	-1.0847	-0.00066312	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.71789	2	12744	12744;12948		23.523	4.3176	1	666990	+		64449	21406	53138	53188	70940;70941	70940					0.09743285928607293
YGRAALSRKSL	11	Unmodified	_YGRAALSRKSL_					0	0	0			REV__ENSG00000168806|ENST00000305641|LCMT2	REV__ENSG00000168806|ENST00000305641|LCMT2	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3555908203125	2	611.356754	1220.69895	-2.725	-0.001666	1.4566	0.0008905	-1.2684	-0.00077546	611.3575283211214	150.83	4.6872	149.39	148.02	152.71	-1.4344					404	109	6	0	0	0	0.69808	1	14897	14897		30.318	1.1477	1	435030	+		64450	21406	53138	53188	70942	70942					0.09743285928607293
YGRKKLPV	8	Unmodified	_YGRKKLPV_					0	0	0			REV__nc|ENSG00000151376|Q16798-2|ME3	REV__nc|ENSG00000151376|Q16798-2|ME3	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.8005676269531	2	480.803094	959.591636	-3.2353	-0.0015556	-1.1249	-0.00054087	-4.3603	-0.0020964	480.80242897085384	151.49	1.9682	150.06	149.63	151.6	-1.4344					128	43	5	0	0	0	0.74816	1	15042	15042		15.636	0.97212	1	1260100	+		64451	20228	53139	53189	70943	70943					0.11022360785045748
YGRRMAEL	8	Unmodified	_YGRRMAEL_					0	0	0			REV__nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1	REV__nc|ENSG00000101391|Q96SZ6-2|CDK5RAP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	499.253173828125	2	498.258194	994.501834	0.52068	0.00025943	-0.19035	-9.4845E-05	0.33032	0.00016459	498.258120626703	160.13	0.59949	160.13	159.91	160.51	0					24	11	4	0	0	0	0.028476	1	18748	18748		19.36	2.655	1	82562	+		64452	17498	53140	53190	70944	70944					0.004363631141700353
YGSGLVLV	8	Unmodified	_YGSGLVLV_					0	0	0			REV__ENSG00000008311|ENST00000417368|AASS	REV__ENSG00000008311|ENST00000417368|AASS	MULTI-MSMS	OvCa9_classI_Rep3	3	404.2327880859375	2	404.234179	806.453805	0.13742	5.5549E-05	-3.8737	-0.0015659	-3.7363	-0.0015103	404.2323701373438	135.34	2.116	134.24	133.77	135.88	-1.1076					82	42	4	0	0	0	0.75724	1	10941	10941		23.037	1.3344	1	396570	+		64453	16452	53141	53191	70945	70945					0.04283612465769693
YGSLRAKWLK	10	Unmodified	_YGSLRAKWLK_					0	0	0			REV__CKAP5|p.W1001Afs*3|1|0.12|ENSG00000175216|chr11:46770973-46770974|AG/-|frameshift_variant	REV__CKAP5|p.W1001Afs*3|1|0.12|ENSG00000175216|chr11:46770973-46770974|AG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3569946289062	2	611.358765	1220.70298	-3.1571	-0.0019301	-1.2176	-0.00074436	-4.3747	-0.0026745	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.73378	2	12762	12762;12786		26.693	2.1737	1	666990	+		64454	16146	53142	53192	70946;70947	70946					0.10145375422303005
YGSTIAVYT	9	Unmodified	_YGSTIAVYT_					0	0	0		ENSG00000049167|ENST00000676185|ERCC8	ENSG00000049167|ENST00000676185|ERCC8	ENSG00000049167|ENST00000676185|ERCC8	MULTI-MSMS	OvCa9_classI_Rep2	2	487.7447814941406	2	487.745108	973.475663	2.4472	0.0011936	-1.7761	-0.00086627	0.67111	0.00032733	487.74399401921767	27.829	0.93581	25.12	24.742	25.677	-2.7097					37	20	3	0	0	0	0.6653	1	513	513		24.203	0	1	33068			64455	1163	53143	53193	70948	70948					-0.012136275763396043
YGTGSTANV	9	Unmodified	_YGTGSTANV_					0	0	0		tr|A0A553SLA1|A0A553SLA1_NIACIPBP1Afamilypenicillin-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_20225PE=4SV=1	tr|A0A553SLA1|A0A553SLA1_NIACIPBP1Afamilypenicillin-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_20225PE=4SV=1	tr|A0A553SLA1|A0A553SLA1_NIACIPBP1Afamilypenicillin-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_20225PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	435.7199401855469	2	435.203607	868.392661	0.84244	0.00036663	0.75216	0.00032734	1.5946	0.00069397	435.2035357618694	57.531	0.63117	57.531	57.396	58.027	0					17	14	2	0	0	0	0.027462	1	4848	4848		44.117	14.967	1	183860			64456	33703	53144	53194	70949	70949					-0.04679944304336914
YGTLLAKRP	9	Unmodified	_YGTLLAKRP_					0	0	0		tr|A0A553SPS6|A0A553SPS6_NIACIArabinanendo-1,5-alpha-L-arabinosidaseOS=NialliacirculansOX=1397GN=CEQ21_08260PE=3SV=1	tr|A0A553SPS6|A0A553SPS6_NIACIArabinanendo-1,5-alpha-L-arabinosidaseOS=NialliacirculansOX=1397GN=CEQ21_08260PE=3SV=1	tr|A0A553SPS6|A0A553SPS6_NIACIArabinanendo-1,5-alpha-L-arabinosidaseOS=NialliacirculansOX=1397GN=CEQ21_08260PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	509.80303955078125	2	509.805834	1017.59712	-1.3099	-0.00066782	-2.9211	-0.0014892	-4.231	-0.002157	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.7044	1	11296	11296		16.473	1.6083	1	99460			64457	34077	53145	53195	70950	70950					0.08902039576832976
YGTPLLPPWQ	10	Unmodified	_YGTPLLPPWQ_					0	0	0		HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|114|3|sense	HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|114|3|sense	HERVH-int_dup552|chr2:41378264-41384502:+|1.1913076545840813|0.0121216847932543|6.62|418.0|114|3|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.2957153320312	2	586.310949	1170.60735	2.676	0.001569	3.0287	0.0017757	5.7047	0.0033447	586.3128941960861	99.025	0.47542	99.025	98.801	99.276	0					22	11	3	0	0	0	0.026915	1	10936	10936		35.618	0	1	453770			64458	14442	53146	53196	70951	70951					0.02886602511421188
YGTRYGASL	9	Unmodified	_YGTRYGASL_					0	0	0		ENST00000487233.1_1_2:217363570-217364184:+|nuORF;ENST00000490649.1_1_2:217363570-217364755:+|nuORF;ENSG00000197756|ENST00000491306|RPL37A;ENST00000478153.1_1_2:217363923-217364755:+|nuORF	ENST00000487233.1_1_2:217363570-217364184:+|nuORF	ENST00000487233.1_1_2:217363570-217364184:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	494.25006103515625	2	494.248349	986.482145	0.021776	1.0763E-05	-0.16508	-8.159E-05	-0.1433	-7.0827E-05	494.24815067238075	62.517	1.0869	62.517	62.209	63.296	0					60	26	4	0	0	0	0.075543	2	5555	5555;5586		104.06	24.606	1	8554400			64459	8745	53147	53197	70952;70953	70952					-0.01163689624968356
YGVGAVASLYR	11	Unmodified	_YGVGAVASLYR_					0	0	0		ENST00000359369.8_1_22:36140254-36146490:-|nuORF;nc|ENSG00000100320|O43251-3|RBFOX2;nc|ENSG00000100320|O43251-5|RBFOX2;nc|ENSG00000100320|O43251-10|RBFOX2;nc|ENSG00000100320|O43251-2|RBFOX2;nc|ENSG00000100320|O43251|RBFOX2;ENSG00000100320|ENST00000695854|RBFOX2;nc|ENSG00000100320|O43251-6|RBFOX2;nc|ENSG00000100320|O43251-8|RBFOX2	ENST00000359369.8_1_22:36140254-36146490:-|nuORF	ENST00000359369.8_1_22:36140254-36146490:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	578.3112182617188	2	578.31148	1154.60841	-5.0394	-0.0029143	2.8881	0.0016702	-2.1513	-0.0012441	578.3129890075253	149.06	1.3548	148.11	147.7	149.05	-0.95119					72	26	4	0	0	0	0.70142	1	12619	12619		29.17	0.020503	1	213080			64460	2045	53148	53198	70954	70954					0.03728816880334307
YGVNLPLKK	9	Unmodified	_YGVNLPLKK_					0	0	0		tr|A0A553SJ57|A0A553SJ57_NIACIProtein-N(Pi)-phosphohistidine--sugarphosphotransferaseOS=NialliacirculansOX=1397GN=CEQ21_16155PE=4SV=1	tr|A0A553SJ57|A0A553SJ57_NIACIProtein-N(Pi)-phosphohistidine--sugarphosphotransferaseOS=NialliacirculansOX=1397GN=CEQ21_16155PE=4SV=1	tr|A0A553SJ57|A0A553SJ57_NIACIProtein-N(Pi)-phosphohistidine--sugarphosphotransferaseOS=NialliacirculansOX=1397GN=CEQ21_16155PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	516.3134155273438	2	516.316035	1030.61752	-5.397	-0.0027865	1.4148	0.00073048	-3.9822	-0.0020561	516.3166994253895	156.49	2.0589	155.32	154.75	156.81	-1.1707					101	49	4	0	0	0	0.69895	1	13492	13492		18.324	0.95945	1	710990			64461	33465	53149	53199	70955	70955					0.10343210236646883
YGVTVFKAL	9	Unmodified	_YGVTVFKAL_					0	0	0		nc|ENSG00000117385|Q32P28-4|P3H1;ENSG00000117385|ENST00000296388|P3H1;nc|ENSG00000117385|Q32P28-3|P3H1;ENST00000460031.5_1_1:43212370-43220777:-|nuORF;ENST00000481465.3_1_1:43215737-43220567:-|nuORF	nc|ENSG00000117385|Q32P28-4|P3H1	nc|ENSG00000117385|Q32P28-4|P3H1	MULTI-MSMS	OvCa99_classI_Rep5	1	499.2890930175781	2	499.289485	996.564418	-0.15849	-7.9135E-05	-0.016111	-8.0439E-06	-0.17461	-8.7179E-05	499.289322210203	105.12	0.74223	105.12	104.66	105.4	0					33	16	3	0	0	0	0.2422	1	11798	11798		69.628	8.6557	1	580140			64462	3251	53150	53200	70956	70956					0.06599832453991894
YGVVVQVKEL	10	Unmodified	_YGVVVQVKEL_					0	0	0			REV__tr|A0A7D7A3S9|A0A7D7A3S9_9CLOTPrecorrin-3BC(17)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=cobJPE=4SV=1	REV__tr|A0A7D7A3S9|A0A7D7A3S9_9CLOTPrecorrin-3BC(17)-methyltransferaseOS=ClostridiumintestinaleOX=36845GN=cobJPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3289184570312	2	567.331882	1132.64921	-2.6412	-0.0014984	-1.2123	-0.00068778	-3.8535	-0.0021862	567.3310908608092	141.92	3.9983	140.91	138.91	142.91	-1.0106					224	80	5	0	0	0	0.75313	1	11961	11961		24.519	0	1	127690	+		64463	32594	53151	53201	70957	70957					0.0881915819995811
YGVYTLVA	8	Unmodified	_YGVYTLVA_					0	0	0			REV__ENSG00000100596|ENST00000216484|SPTLC2	REV__ENSG00000100596|ENST00000216484|SPTLC2	MULTI-SECPEP	OvCa99_classI_Rep5	1	443.71728515625	2	443.239461	884.46437	1.1879	0.00052653	-4.1015	-0.0018179	-2.9136	-0.0012914	443.2376035605541	58.144	0.7131	58.144	57.775	58.488	0					35	16	3	0	0	0	0.028476	1	4962	4962		57.453	30.657	1	544440	+		64464	17434	53152	53202	70958	70958					0.017515951201971802
YGYFFDLIED	10	Unmodified	_YGYFFDLIED_					0	0	0			REV__ENSG00000244462|ENST00000374114|RBM12	REV__ENSG00000244462|ENST00000374114|RBM12	MULTI-SECPEP	OvCa99_classI_Rep5	1	641.0361938476562	2	641.287337	1280.56012	1.3575	0.00087055	0.10218	6.553E-05	1.4597	0.00093608	641.285600902375	155.79	0.20552	155.79	155.68	155.89	0					5	3	2	0	0	0	0.027021	1	18260	18260		29.15	8.2026	1	13741	+		64465	23477	53153	53203	70959	70959					-0.0689372155025012
YGYRPLPGR	9	Unmodified	_YGYRPLPGR_					0	0	0		ENST00000608391.1_1_21:37692244-37692574:-|nuORF	ENST00000608391.1_1_21:37692244-37692574:-|nuORF	ENST00000608391.1_1_21:37692244-37692574:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	539.833251953125	2	539.793258	1077.57196	1.0024	0.00054107	0.13063	7.0512E-05	1.133	0.00061159	539.7929487786222	154.2	0.64571	154.2	153.98	154.62	0					26	12	3	0	0	0	0.027448	1	18113	18113		35.618	6.4687	1	82061			64466	14296	53154	53204	70960	70960					0.03627984774266224
YHFCRLLF	8	Carbamidomethyl (C)	_YHFC(Carbamidomethyl (C))RLLF_	YHFC(1)RLLF		YHFC(42)RLLF		0	1	0			REV__ENSG00000181963|ENST00000325719|OR52K2	REV__ENSG00000181963|ENST00000325719|OR52K2	MULTI-MSMS	OvCa9_classI_Rep2	2	578.2892456054688	2	578.292037	1154.56952	-5.4888	-0.0031741	1.4252	0.00082417	-4.0636	-0.0023499	578.2927598597663	159.22	4.1126	158.99	158.53	162.64	-0.22697					262	82	5	0	0	0	0.7043	1	16418	16418		42.474	8.5528	1	1073400	+		64467	22255	53155	53205	70961	70961	256				-0.0015818695505913638
YHFDGEEF	8	Unmodified	_YHFDGEEF_					0	0	0		tr|A0A553SRN3|A0A553SRN3_NIACINAD(P)-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_01445PE=4SV=1	tr|A0A553SRN3|A0A553SRN3_NIACINAD(P)-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_01445PE=4SV=1	tr|A0A553SRN3|A0A553SRN3_NIACINAD(P)-dependentoxidoreductaseOS=NialliacirculansOX=1397GN=CEQ21_01445PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.739013671875	2	522.208889	1042.40323	-0.57638	-0.00030099	-1.7956	-0.00093768	-2.372	-0.0012387	522.7098211181602	69.389	0.16817	69.389	69.307	69.475	0					5	3	2	0	0	0	0.028476	1	6594	6594		35.201	9.7505	1	53441			64468	34280	53156	53206	70962	70962					-0.11627961649901408
YHIHKQEL	8	Unmodified	_YHIHKQEL_					0	0	0			REV__ENSG00000118873|ENST00000358951|RAB3GAP2	REV__ENSG00000118873|ENST00000358951|RAB3GAP2	MULTI-MSMS	OvCa9_classI_Rep2	2	534.2841186523438	2	534.285266	1066.55598	-2.6253	-0.0014027	0.2567	0.00013715	-2.3686	-0.0012655	534.2853249457943	142.91	1.1362	142.68	142.26	143.4	-0.22696					49	22	3	0	0	0	0.7224	1	14339	14339		38.806	3.1879	1	71580	+		64469	18418	53157	53207	70963	70963					0.025362785373772567
YHKVLDKL	8	Unmodified	_YHKVLDKL_					0	0	0		tr|A0A7D6VSR3|A0A7D6VSR3_9CLOTAdenylosuccinatesynthetaseOS=ClostridiumintestinaleOX=36845GN=purAPE=3SV=1	tr|A0A7D6VSR3|A0A7D6VSR3_9CLOTAdenylosuccinatesynthetaseOS=ClostridiumintestinaleOX=36845GN=purAPE=3SV=1	tr|A0A7D6VSR3|A0A7D6VSR3_9CLOTAdenylosuccinatesynthetaseOS=ClostridiumintestinaleOX=36845GN=purAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	508.302490234375	2	508.300384	1014.58622	0.17446	8.8677E-05	2.4872	0.0012642	2.6616	0.0013529	508.3016033253037	81.716	3.6233	80.067	78.915	82.538	-1.6485					135	71	4	0	0	0	0.67745	1	6907	6907		47.916	5.4411	1	1275400			64470	35050	53158	53208	70964	70964					0.07950637202554844
YHWMGLVHI	9	Unmodified	_YHWMGLVHI_					0	0	0		ENST00000540267.5_1_12:10525715-10532097:-|nuORF;ENSG00000213809|ENST00000240618|KLRK1	ENST00000540267.5_1_12:10525715-10532097:-|nuORF	ENST00000540267.5_1_12:10525715-10532097:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	578.290283203125	2	578.292037	1154.56952	-7.6021	-0.0043963	3.4482	0.0019941	-4.154	-0.0024022	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.68641	1	13086	13086		21.702	0.7554	1	1429200			64471	9149	53159	53209	70965	70965					-0.0015818695503639901
YIAETNLTY	9	Unmodified	_YIAETNLTY_					0	0	0		tr|A0A553SRV7|A0A553SRV7_NIACIAlanine:cationsymporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01790PE=3SV=1	tr|A0A553SRV7|A0A553SRV7_NIACIAlanine:cationsymporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01790PE=3SV=1	tr|A0A553SRV7|A0A553SRV7_NIACIAlanine:cationsymporterfamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_01790PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	544.3460083007812	2	544.268947	1086.52334	0.38185	0.00020783	-2.9057	-0.0015815	-2.5238	-0.0013736	544.2673889932854	130.37	0.44461	129.25	129.03	129.48	-1.1121					13	8	2	0	0	0	0.027462	1	10367	10367		52.937	3.4952	1	19688			64472	34304	53160	53210	70966	70966					-0.016459733761621465
YIAGLLVLA	9	Unmodified	_YIAGLLVLA_					0	0	0		ENSG00000158555|ENST00000336898|GDPD5;ENST00000527322.5_1_11:75154120-75168815:-|nuORF;ENST00000528031.1_1_11:75167699-75188792:-|nuORF	ENSG00000158555|ENST00000336898|GDPD5	ENSG00000158555|ENST00000336898|GDPD5	MULTI-MSMS	OvCa9_classI_Rep2	2	466.7940368652344	2	466.794404	931.574254	0.16431	7.67E-05	-0.27024	-0.00012615	-0.10593	-4.9446E-05	466.7941140608781	113.74	1.5796	113.63	113.37	114.95	-0.11777					73	31	3	0	0	0	0.32242	1	10805	10805		60.404	0	1	211490			64473	5961	53161	53211	70967	70967					0.10573020459355575
YIAKLQQSL	9	Unmodified	_YIAKLQQSL_					0	0	0			REV__ENSG00000169299|ENST00000381967|PGM2	REV__ENSG00000169299|ENST00000381967|PGM2	MULTI-MSMS	OvCa99_classI_Rep5	1	532.3134765625	2	532.310949	1062.60735	1.9949	0.0010619	3.9275	0.0020907	5.9224	0.0031526	532.3128512073132	133.82	0.85121	133.82	133.49	134.34	0					48	17	4	0	0	0	0.38969	1	15579	15579		52.937	0	1	700110	+		64474	21452	53162	53212	70968	70968					0.0785460251142922
YIALVWIL	8	Unmodified	_YIALVWIL_					0	0	0		ENST00000432809.5_1_3:33339416-33427097:+|nuORF	ENST00000432809.5_1_3:33339416-33427097:+|nuORF	ENST00000432809.5_1_3:33339416-33427097:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	495.32232666015625	2	495.804771	989.59499	-0.46744	-0.00023176	-3.3117	-0.001642	-3.7792	-0.0018737	495.8027480094951	104.31	0.54677	103.73	103.52	104.07	-0.57639					19	10	3	0	0	0	0.028476	1	9683	9683		24.504	0	1	23098			64475	11816	53163	53213	70969	70969					0.09977610839030149
YIANLKDQL	9	Unmodified	_YIANLKDQL_					0	0	0		IQCG|p.Q256K|1|0.04|ENSG00000114473|chr3:197914003-197914003|G/T|missense_variant;nc|ENSG00000114473|Q9H095-2|IQCG;ENSG00000114473|ENST00000265239|IQCG	IQCG|p.Q256K|1|0.04|ENSG00000114473|chr3:197914003-197914003|G/T|missense_variant	IQCG|p.Q256K|1|0.04|ENSG00000114473|chr3:197914003-197914003|G/T|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	540.291015625	2	539.300581	1076.58661	-0.26895	-0.00014504	0.20136	0.00010859	-0.067589	-3.6451E-05	539.3002676870178	86.768	0.75287	84.591	84.131	84.884	-2.1768					20	14	3	0	0	0	0.027462	1	5138	5138		42.396	5.237	1	31951			64476	3023	53164	53214	70970	70970					0.05138012131760661
YIAPMHLIY	9	Unmodified	_YIAPMHLIY_					0	0	0		ENST00000452150.6_1_6:131161525-131161600:-|nuORF	ENST00000452150.6_1_6:131161525-131161600:-|nuORF	ENST00000452150.6_1_6:131161525-131161600:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.8175048828125	2	560.79662	1119.57869	2.5528	0.0014316	-2.9133	-0.0016337	-0.36043	-0.00020213	560.7949854593817	133.84	0.94003	133.84	133.53	134.47	0					54	19	4	0	0	0	0.02744	1	15578	15578		49.211	27.508	1	588550			64477	12053	53165	53215	70971	70971					0.023681616106387082
YIASDLYGNM	10	Oxidation (M)	_YIASDLYGNM(Oxidation (M))_		YIASDLYGNM(1)		YIASDLYGNM(44)	0	0	1			REV__ENSG00000173627|ENST00000308641|APOBEC4	REV__ENSG00000173627|ENST00000308641|APOBEC4	MULTI-MSMS	OvCa99_classI_Rep5	1	581.759521484375	2	581.757889	1161.50123	0.74331	0.00043243	2.0161	0.0011729	2.7594	0.0016053	581.7589441600738	124.49	0.78481	124.49	124.24	125.02	0					33	16	3	0	0	0	0.58067	1	14361	14361		44.377	10.862	1	660710	+		64478	21792	53166	53216	70972	70972		508			-0.0730652111622021
YICLIQKRM	9	Carbamidomethyl (C),Oxidation (M)	_YIC(Carbamidomethyl (C))LIQKRM(Oxidation (M))_	YIC(1)LIQKRM	YICLIQKRM(1)	YIC(49)LIQKRM	YICLIQKRM(49)	0	1	1			REV__ENST00000520235.1_1_8:69103966-69132518:+|nuORF	REV__ENST00000520235.1_1_8:69103966-69132518:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	414.2247619628906	3	414.222871	1239.64678	-0.3305	-0.0001369	4.0816	0.0016907	3.7511	0.0015538	414.22450437616624	91.833	1.6665	89.291	88.912	90.578	-2.5425					92	32	4	0	0	0	0.42676	1	7954	7954		49.442	16.691	1	474150	+		64479	27052	53167	53217	70973	70973	334	600			0.036546631989949674
YICLIQKRM	9	Carbamidomethyl (C),Oxidation (M)	_YIC(Carbamidomethyl (C))LIQKRM(Oxidation (M))_					0	1	1			REV__ENST00000520235.1_1_8:69103966-69132518:+|nuORF	REV__ENST00000520235.1_1_8:69103966-69132518:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		3	414.222871	1239.64678	-0.081132	-3.3607E-05	3.4582	0.0014324	3.377	0.0013988	414.22426636684577	91.286	1.431	89.262	88.93	90.361	-2.0241	-0.014464	-0.0003939	NaN	49.442	90	28	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	487370	+		64480	27052	53167	53217			334	600			0.036546631989949674
YIDGLADIAP	10	Unmodified	_YIDGLADIAP_					0	0	0		tr|A0A7D6VS19|A0A7D6VS19_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_14255PE=4SV=1	tr|A0A7D6VS19|A0A7D6VS19_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_14255PE=4SV=1	tr|A0A7D6VS19|A0A7D6VS19_9CLOTMetallophosphoesteraseOS=ClostridiumintestinaleOX=36845GN=HZF06_14255PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.2752075195312	2	524.27149	1046.52843	1.0505	0.00055072	-1.8064	-0.00094705	-0.75595	-0.00039632	524.2701658610788	98.428	0.56017	98.428	98.165	98.725	0					27	12	3	0	0	0	0.027021	1	10883	10883		29.15	13.508	1	714000			64481	34976	53168	53218	70974	70974					0.00702330486478786
YIDLHKRK	8	Unmodified	_YIDLHKRK_					0	0	0			REV__sp|Q6SW66|UL76_HCMVMProteinUL76OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL76PE=2SV=1	REV__sp|Q6SW66|UL76_HCMVMProteinUL76OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL76PE=2SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	537.8057250976562	2	536.816733	1071.61891	1.8178	0.00097582	0.0037266	2.0005E-06	1.8215	0.00097782	536.8168636661148	68.958	1.4444	66.144	65.863	67.308	-2.8144					46	28	3	0	0	0	0.028476	1	3152	3152		65.803	9.0821	1	37703	+		64482	29444	53169	53219	70975	70975					0.08596844325415987
YIDLVIIHSP	10	Unmodified	_YIDLVIIHSP_					0	0	0		tr|A0A553SU88|A0A553SU88_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06450PE=4SV=1	tr|A0A553SU88|A0A553SU88_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06450PE=4SV=1	tr|A0A553SU88|A0A553SU88_NIACIAldo/ketoreductaseOS=NialliacirculansOX=1397GN=CEQ21_06450PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	584.3330688476562	2	585.331882	1168.64921	0.32157	0.00018822	1.6579	0.00097044	1.9795	0.0011587	585.3327025952112	114.06	0.72713	114.06	113.92	114.65	0					28	15	3	0	0	0	0.027056	1	13060	13060		20.947	3.582	1	400720			64483	34584	53170	53220	70976	70976					0.07163158199955433
YIEERVAKN	9	Unmodified	_YIEERVAKN_					0	0	0			REV__tr|A0A7D6VR54|A0A7D6VR54_9CLOTalpha,alpha-phosphotrehalaseOS=ClostridiumintestinaleOX=36845GN=treCPE=4SV=1	REV__tr|A0A7D6VR54|A0A7D6VR54_9CLOTalpha,alpha-phosphotrehalaseOS=ClostridiumintestinaleOX=36845GN=treCPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.6279907226562	2	561.301113	1120.58767	2.61	0.001465	3.2096	0.0018016	5.8196	0.0032665	561.3027908189345	87.583	0.87395	87.583	87.338	88.212	0					31	20	2	0	0	0	0.027462	1	9308	9308		44.117	27.644	1	450370	+		64484	31387	53171	53221	70977	70977					0.032202265006844755
YIEHIFEI	8	Unmodified	_YIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	OvCa99_classI_Rep5	1	532.278076171875	2	532.276575	1062.5386	2.7437	0.0014604	-0.31501	-0.00016767	2.4287	0.0012928	532.2762878432969	115.89	1.4549	115.89	115.63	117.09	0					95	31	5	0	0	0	0.31087	2	13262	13239;13262		105.27	17.514	1	3343800			64485	6223	53172	53222	70978;70979	70979					0.009829382117231944
YIEHIFEI	8	Unmodified	_YIEHIFEI_					0	0	0		ENSG00000162734|ENST00000360472|PEA15;nc|ENSG00000162734|Q15121-2|PEA15	ENSG00000162734|ENST00000360472|PEA15	ENSG00000162734|ENST00000360472|PEA15	MULTI-MSMS	OvCa99_classI_Rep5	1	532.2776489257812	2	532.276575	1062.5386	1.6219	0.00086329	0.11687	6.2206E-05	1.7387	0.00092549	532.2765142768244	127.29	1.2237	127.29	126.91	128.14	0					66	26	3	0	0	0	0.31087	2	14766	14742;14766		105.27	18.971	1	1150700			64486	6223	53172	53222	70980;70981	70981					0.009829382117231944
YIEIITSSI	9	Unmodified	_YIEIITSSI_					0	0	0		ENSG00000254999|ENST00000530758|BRK1;nc|ENSG00000254999|Q8WUW1-2|BRK1	ENSG00000254999|ENST00000530758|BRK1	ENSG00000254999|ENST00000530758|BRK1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2730712890625	2	519.789515	1037.56448	2.2609	0.0011752	1.7667	0.00091831	4.0276	0.0020935	519.7900133177337	89.393	0.80859	89.393	89.082	89.891	0					43	19	3	0	0	0	0.027462	1	9572	9572		17.365	0	1	952070			64487	9451	53173	53223	70982	70982					0.04719787663339048
YIEQQILHRVQ	11	Unmodified	_YIEQQILHRVQ_					0	0	0			REV__nc|ENSG00000166669|Q5U623-2|ATF7IP2	REV__nc|ENSG00000166669|Q5U623-2|ATF7IP2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	475.79986572265625	3	476.264892	1425.77285	-0.15195	-7.237E-05	2.764	0.0013164	2.612	0.001244	476.26646472201014	55.968	0.76005	52.674	52.26	53.02	-3.2944					20	14	2	0	0	0	0.026101	1	3567	3567		15.921	0	1	21282	+		64488	21212	53174	53224	70983	70983					0.07699209300267285
YIEQRLKSL	9	Unmodified	_YIEQRLKSL_					0	0	0			REV__ENSG00000124429|ENST00000262753|POF1B	REV__ENSG00000124429|ENST00000262753|POF1B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	575.3111572265625	2	575.334956	1148.65536	-1.1625	-0.00066885	-1.3863	-0.00079762	-2.5489	-0.0014665	575.335112066182	99.666	0.61696	97.341	96.951	97.568	-2.3253					14	11	2	0	0	0	0.027342	1	8882	8882		101.6	0	1	37436	+		64489	18687	53175	53225	70984	70984					0.0869767643148407
YIEQWIHE	8	Unmodified	_YIEQWIHE_					0	0	0		tr|A0A7D6VXH4|A0A7D6VXH4_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12060PE=4SV=1	tr|A0A7D6VXH4|A0A7D6VXH4_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12060PE=4SV=1	tr|A0A7D6VXH4|A0A7D6VXH4_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12060PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	559.2687377929688	2	559.269281	1116.52401	-0.25427	-0.0001422	-0.61154	-0.00034202	-0.86581	-0.00048422	559.2688141503189	37.136	3.4912	37.136	36.662	40.154	0					134	77	3	0	0	0	0.65062	1	2048	2048		53.351	14.099	1	738250			64490	35282	53176	53226	70985	70985					-0.029591339364287705
YIEQWIHE	8	Unmodified	_YIEQWIHE_					0	0	0		tr|A0A7D6VXH4|A0A7D6VXH4_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12060PE=4SV=1	tr|A0A7D6VXH4|A0A7D6VXH4_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12060PE=4SV=1	tr|A0A7D6VXH4|A0A7D6VXH4_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12060PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	559.269281	1116.52401	0.31954	0.00017871	-3.3686	-0.001884	-3.0491	-0.0017053	559.2670304958813	40.406	0.83041	37.452	37.062	37.893	-2.9541	0.15805	-0.0029811	NaN	53.351	42	15	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	35603			64491	35282	53176	53226							-0.029591339364287705
YIERKNKLA	9	Unmodified	_YIERKNKLA_					0	0	0			REV__tr|A0A7D6VUD4|A0A7D6VUD4_9CLOTPepSYdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01620PE=4SV=1	REV__tr|A0A7D6VUD4|A0A7D6VUD4_9CLOTPepSYdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01620PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.7942504882812	2	567.835123	1133.65569	-0.68996	-0.00039178	0.51158	0.00029049	-0.17838	-0.00010129	567.8350544680059	89.734	1.2817	87.653	87.337	88.619	-2.0805					53	24	3	0	0	0	0.027462	1	5588	5588		45.952	25.005	1	89180	+		64492	31669	53177	53227	70986	70986					0.09421096151322672
YIFANGIKLV	10	Unmodified	_YIFANGIKLV_					0	0	0			REV__ENST00000354416.7_1_X:118753384-118753732:-|nuORF	REV__ENST00000354416.7_1_X:118753384-118753732:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	569.7861328125	2	569.336967	1136.65938	-0.80012	-0.00045554	-3.4359	-0.0019562	-4.236	-0.0024117	569.3348523107762	89.923	0.76896	87.842	87.592	88.361	-2.0805					26	14	2	0	0	0	0.027021	1	5612	5612		29.15	4.6304	1	83496	+		64493	24736	53178	53228	70987	70987					0.09651765925173095
YIFHVELKE	9	Unmodified	_YIFHVELKE_					0	0	0		ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	ENSG00000156875|ENST00000370152|MFSD14A	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.7736206054688	2	589.316232	1176.61791	2.0332	0.0011982	-4.3307	-0.0025521	-2.2974	-0.0013539	589.8129972649502	76.7	0.2393	76.7	76.518	76.757	0					7	5	2	0	0	0	0.027462	1	7709	7709		44.117	8.4985	1	203510			64494	5861	53179	53229	70988	70988					0.03666585165842662
YIFISLHPFHD	11	Unmodified	_YIFISLHPFHD_					0	0	0			REV__ENST00000568641.1_1_17:5403919-5404423:-|nuORF	REV__ENST00000568641.1_1_17:5403919-5404423:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	464.29852294921875	3	463.571434	1387.69247	2.1075	0.000977	-3.0275	-0.0014035	-0.91995	-0.00042646	463.5701463426563	100.35	0.29527	100.35	100.15	100.44	0					12	6	3	0	0	0	0.025995	1	11107	11107		36.318	27.91	1	138820	+		64495	27716	53180	53230	70989	70989					0.014133479772226565
YIFLENEENG	10	Unmodified	_YIFLENEENG_					0	0	0		tr|A0A553SSS0|A0A553SSS0_NIACIHeme-degradingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03610PE=4SV=1	tr|A0A553SSS0|A0A553SSS0_NIACIHeme-degradingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03610PE=4SV=1	tr|A0A553SSS0|A0A553SSS0_NIACIHeme-degradingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03610PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	613.7039184570312	2	614.280043	1226.54553	2.1882	0.0013441	0.57564	0.00035361	2.7638	0.0016977	614.7835859426636	122.07	0.32368	122.07	121.94	122.27	0					8	6	2	0	0	0	0.027028	1	14043	14043		39.253	25.116	1	33424			64496	34410	53181	53231	70990	70990					-0.05867793698371315
YIFLENEENG	10	Unmodified	_YIFLENEENG_					0	0	0		tr|A0A553SSS0|A0A553SSS0_NIACIHeme-degradingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03610PE=4SV=1	tr|A0A553SSS0|A0A553SSS0_NIACIHeme-degradingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03610PE=4SV=1	tr|A0A553SSS0|A0A553SSS0_NIACIHeme-degradingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03610PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	614.280043	1226.54553	-0.86415	-0.00053083	0.78431	0.00048178	-0.07984	-4.9044E-05	614.2804521760382	122.3	1.4831	122.08	121.62	123.11	-0.21803	0.10727	0.0015914	NaN	39.253	51	29	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	52056			64497	34410	53181	53231							-0.05867793698371315
YIFLENEENG	10	Unmodified	_YIFLENEENG_					0	0	0		tr|A0A553SSS0|A0A553SSS0_NIACIHeme-degradingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03610PE=4SV=1	tr|A0A553SSS0|A0A553SSS0_NIACIHeme-degradingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03610PE=4SV=1	tr|A0A553SSS0|A0A553SSS0_NIACIHeme-degradingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03610PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	614.280043	1226.54553	2.6751	0.0016433	-2.6127	-0.0016049	0.062427	3.8348E-05	614.2783472177066	122.89	1.1454	121.86	121.58	122.73	-1.0286	-0.11313	-0.002582	NaN	39.253	47	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	67029			64498	34410	53181	53231							-0.05867793698371315
YIFLENEENG	10	Unmodified	_YIFLENEENG_					0	0	0		tr|A0A553SSS0|A0A553SSS0_NIACIHeme-degradingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03610PE=4SV=1	tr|A0A553SSS0|A0A553SSS0_NIACIHeme-degradingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03610PE=4SV=1	tr|A0A553SSS0|A0A553SSS0_NIACIHeme-degradingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_03610PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	614.280043	1226.54553	0.25292	0.00015536	-0.34509	-0.00021198	-0.092168	-5.6617E-05	614.2796639581858	123.25	1.3369	121.88	121.56	122.89	-1.3666	-0.089661	0.00020386	NaN	39.253	51	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	62184			64499	34410	53181	53231							-0.05867793698371315
YIFLVFAAA	9	Unmodified	_YIFLVFAAA_					0	0	0			REV__tr|A0A553SQM3|A0A553SQM3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07950PE=4SV=1	REV__tr|A0A553SQM3|A0A553SQM3_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_07950PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	507.78759765625	2	507.786579	1013.5586	1.9448	0.00098757	-0.11983	-6.0846E-05	1.825	0.00092672	507.7864181911915	128.86	0.65421	128.86	128.61	129.26	0					25	13	3	0	0	0	0.32242	1	14941	14941		60.404	13.637	1	178460	+		64500	30644	53182	53232	70991	70991					0.052367339423199155
YIFTHRLNE	9	Unmodified	_YIFTHRLNE_					0	0	0			REV__chr15:24968082-24974358|192|37.05|0.0|21.82|+|0|SNURF,None|1	REV__chr15:24968082-24974358|192|37.05|0.0|21.82|+|0|SNURF,None|1	MULTI-SECPEP	OvCa99_classI_Rep5	1	596.8253784179688	2	596.809105	1191.60366	-0.34593	-0.00020646	-3.1959	-0.0019074	-3.5419	-0.0021138	596.8081824861184	38.448	0.23019	38.448	38.301	38.531	0					7	4	2	0	0	0	0.027461	1	2172	2172		49.442	17.912	1	16826	+		64501	15917	53183	53233	70992	70992					0.015519327375841385
YIFTKKRKQ	9	Unmodified	_YIFTKKRKQ_					0	0	0		nc|ENSG00000104093|Q8TDJ6|DMXL2;nc|ENSG00000104093|Q8TDJ6-3|DMXL2;ENSG00000104093|ENST00000560891|DMXL2;nc|ENSG00000104093|Q8TDJ6-2|DMXL2;ENST00000561079.1_1_15:51755569-51758496:-|nuORF	nc|ENSG00000104093|Q8TDJ6|DMXL2	nc|ENSG00000104093|Q8TDJ6|DMXL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	607.31640625	2	606.36659	1210.71863	0.54575	0.00033093	-0.64336	-0.00039011	-0.097611	-5.9188E-05	606.3659891255157	63.536	0.43626	63.536	63.337	63.773	0					17	10	2	0	0	0	0.027462	1	5743	5743		21.96	0	1	423810			64502	2352	53184	53234	70993	70993					0.12169661939378784
YIFVCPVFF	9	Unmodified	_YIFVCPVFF_					0	0	0			REV__ENSG00000236981|ENST00000375024|OR10G9	REV__ENSG00000236981|ENST00000375024|OR10G9	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.2968139648438	2	567.788264	1133.56198	2.1492	0.0012203	4.2666	0.0024225	6.4158	0.0036428	567.7893190970001	117.75	1.1651	117.75	117.51	118.67	0					38	24	4	0	0	0	0.027462	1	13598	13598		29.842	1.5873	1	410950	+		64503	23415	53185	53235	70994	70994					0.0005366072468859784
YIGGAFEKAE	10	Unmodified	_YIGGAFEKAE_					0	0	0			REV__nc|ENSG00000162929|Q6NSI8-3|SANBR	REV__nc|ENSG00000162929|Q6NSI8-3|SANBR	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.78125	2	542.769114	1083.52368	1.2683	0.0006884	1.0408	0.00056492	2.3091	0.0012533	542.7694983055021	101.33	0.71362	101.33	101.02	101.73	0					48	16	4	0	0	0	0.026659	1	11266	11266		45.972	6.7194	1	2926300	+		64504	20794	53186	53236	70995	70995					-0.014745536562941197
YIGHLDSCTL	10	Unmodified	_YIGHLDSCTL_					0	0	0			REV__nc|ENSG00000110046|Q2TAZ0-3|ATG2A	REV__nc|ENSG00000110046|Q2TAZ0-3|ATG2A	MULTI-MSMS	OvCa99_classI_Rep5	1	561.2678833007812	2	561.268424	1120.5223	0.21639	0.00012145	-3.5347	-0.0019839	-3.3183	-0.0018624	561.2663407646098	58.9	0.49688	58.9	58.696	59.192	0					22	12	2	0	0	0	0.48198	1	5036	5036		56.721	3.3696	1	2298900	+		64505	17965	53187	53237	70996	70996					-0.03314511016696997
YIGKHVPWW	9	Unmodified	_YIGKHVPWW_					0	0	0		L1PA11_dup580|chr2:214963946-214966413:+|1.0797114683140654|0.244988541359441|2.14|429.0|108|2|anti-sense	L1PA11_dup580|chr2:214963946-214966413:+|1.0797114683140654|0.244988541359441|2.14|429.0|108|2|anti-sense	L1PA11_dup580|chr2:214963946-214966413:+|1.0797114683140654|0.244988541359441|2.14|429.0|108|2|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	593.3148803710938	2	593.313826	1184.6131	1.722	0.0010217	-1.2866	-0.00076334	0.43539	0.00025832	593.3129769185394	125.09	1.578	125.09	124.74	126.32	0					66	36	2	0	0	0	0.42057	1	14482	14482		50.025	9.9664	1	2569600			64506	14649	53188	53238	70997	70997					0.028177458137406575
YIGLSDGPKYT	11	Unmodified	_YIGLSDGPKYT_					0	0	0			REV__tr|A0A553SPX9|A0A553SPX9_NIACIAssimilatorysulfitereductase(NADPH)flavoproteinsubunitOS=NialliacirculansOX=1397GN=CEQ21_12135PE=4SV=1	REV__tr|A0A553SPX9|A0A553SPX9_NIACIAssimilatorysulfitereductase(NADPH)flavoproteinsubunitOS=NialliacirculansOX=1397GN=CEQ21_12135PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	607.3117065429688	2	607.308603	1212.60265	1.1671	0.00070881	2.3715	0.0014402	3.5387	0.0021491	607.310005002933	89.7	1.9611	87.125	86.559	88.52	-2.575					96	38	3	0	0	0	0.7046	1	7711	7711		28.081	0.19925	1	823340	+		64507	30582	53189	53239	70998	70998					0.004856735780094823
YIGNIRIN	8	Unmodified	_YIGNIRIN_					0	0	0			REV__ENSG00000205495|ENST00000380370|OR52J3	REV__ENSG00000205495|ENST00000380370|OR52J3	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.2746276855469	2	481.774534	961.534515	-0.35279	-0.00016997	1.8843	0.0009078	1.5315	0.00073784	481.7752513658071	33.508	0.53648	33.508	33.384	33.921	0					17	10	2	0	0	0	0.028476	1	1543	1543		26.796	14.589	1	134340	+		64508	23218	53190	53240	70999	70999					0.05220893508658264
YIGNNNVVLL	10	Unmodified	_YIGNNNVVLL_					0	0	0			REV__nc|ENSG00000131373|Q9UJ83-3|HACL1	REV__nc|ENSG00000131373|Q9UJ83-3|HACL1	MULTI-MSMS	OvCa9_classI_Rep3	3	559.8152465820312	2	559.813856	1117.61316	-0.97774	-0.00054735	4.3631	0.0024425	3.3854	0.0018952	559.8160584775942	134.25	2.5628	133.13	132.52	135.08	-1.1226					125	51	4	0	0	0	0.65434	1	10811	10811		35.618	5.1146	1	225320	+		64509	19007	53191	53241	71000	71000					0.05905701023107213
YIGPVGPFSI	10	Unmodified	_YIGPVGPFSI_					0	0	0		LYL1|p.A118V|1|0.19|ENSG00000104903|chr19:13100731-13100731|G/A|missense_variant	LYL1|p.A118V|1|0.19|ENSG00000104903|chr19:13100731-13100731|G/A|missense_variant	LYL1|p.A118V|1|0.19|ENSG00000104903|chr19:13100731-13100731|G/A|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	525.2841186523438	2	525.286943	1048.55933	-0.52191	-0.00027415	-3.9151	-0.0020565	-4.437	-0.0023307	525.2848982861796	114.53	2.2405	113.48	112.84	115.08	-1.055					123	44	4	0	0	0	0.55145	1	8516	8516		47.916	5.5195	1	908300			64510	14811	53192	53242	71001	71001					0.03699528591369017
YIHLLELL	8	Unmodified	_YIHLLELL_					0	0	0			REV__ENST00000488436.1_1_9:21017882-21026717:-|nuORF	REV__ENST00000488436.1_1_9:21017882-21026717:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.7879333496094	2	507.305136	1012.59572	1.9554	0.00099201	-3.6912	-0.0018725	-1.7357	-0.00088054	507.30310879893284	116.48	0.53743	116.48	116.32	116.86	0					17	11	2	0	0	0	0.028476	1	13354	13354		49.211	10.189	1	96827	+		64511	22750	53193	53243	71002	71002					0.08992405488095301
YIHPKKVVP	9	Unmodified	_YIHPKKVVP_					0	0	0			REV__ENSG00000136875|ENST00000374198|PRPF4	REV__ENSG00000136875|ENST00000374198|PRPF4	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.830810546875	2	540.831852	1079.64915	-2.0025	-0.001083	1.179	0.00063766	-0.82347	-0.00044536	540.8325567076699	124.8	3.4681	123.41	123.02	126.49	-1.3908					189	68	4	0	0	0	0.64339	1	12006	12006		26.796	7.4361	1	9581200	+		64512	19416	53194	53244	71003	71003					0.11251202990615639
YIHVGAQL	8	Unmodified	_YIHVGAQL_					0	0	0		ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	ENSG00000176658|ENST00000318217|MYO1D	MULTI-MSMS	OvCa99_classI_Rep5	1	450.7514343261719	2	450.750527	899.486502	2.1632	0.00097505	-0.18416	-8.3008E-05	1.979	0.00089204	450.75037744029146	77.82	1.8903	77.82	77.461	79.352	0					100	45	4	0	0	0	0.088007	3	7870	7847;7870;7904		146.66	45.496	1	21076000			64513	7620	53195	53245	71004;71005;71006	71005					0.03273819588616789
YIIDNHIIL	9	Unmodified	_YIIDNHIIL_					0	0	0			REV__tr|A0A7D6VQ84|A0A7D6VQ84_9CLOTAryl-sulfatesulfotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19800PE=4SV=1	REV__tr|A0A7D6VQ84|A0A7D6VQ84_9CLOTAryl-sulfatesulfotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19800PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	557.3191528320312	2	557.318774	1112.623	2.0077	0.001119	-0.64321	-0.00035847	1.3645	0.00076048	557.3182888900194	113.72	1.0157	113.72	113.5	114.51	0					70	22	5	0	0	0	0.14998	1	12956	12956		84.916	13.038	1	7308800	+		64514	31304	53196	53246	71007	71007					0.07118889028470221
YIIFLRIT	8	Unmodified	_YIIFLRIT_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-MSMS	OvCa9_classI_Rep3	3	519.820556640625	2	519.820953	1037.62735	-0.033156	-1.7235E-05	-0.58886	-0.0003061	-0.62202	-0.00032334	519.8206593971257	132.68	7.0212	131.56	131.19	138.21	-1.1249					377	142	6	0	0	0	0.56113	2	10800	10770;10800		71.378	5.3995	1	7095700			64515	6685	53197	53247	71008;71009	71009					0.11004398242016578
YIIFLRIT	8	Unmodified	_YIIFLRIT_					0	0	0		ENSG00000166471|ENST00000528080|TMEM41B;ENST00000524543.5_1_11:9304973-9316821:-|nuORF;ENST00000533867.1_1_11:9304973-9309374:-|nuORF	ENSG00000166471|ENST00000528080|TMEM41B	ENSG00000166471|ENST00000528080|TMEM41B	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.8202514648438	2	519.820953	1037.62735	3.2355	0.0016819	-4.237	-0.0022025	-1.0015	-0.00052058	519.8189203176197	133.01	12.026	131.51	130.85	142.87	-1.5016					509	242	6	0	0	0	0.62934	5	12973	12973;12996;13033;13103;13327		57.811	6.4758	1	11423000			64516	6685	53197	53247	71010;71011;71012;71013;71014	71010					0.11004398242016578
YIIFWDFL	8	Unmodified	_YIIFWDFL_					0	0	0			REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|242|3|anti-sense	REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|242|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	558.793701171875	2	558.791861	1115.56917	0.040631	2.2704E-05	2.2258	0.0012438	2.2664	0.0012665	558.7929681205369	54.313	0.49709	54.313	54.008	54.505	0					29	11	4	0	0	0	0.69415	1	4388	4388		44.531	0.41427	1	1427000	+		64517	28386	53198	53248	71015	71015					0.016007165967494075
YIIFWDFL	8	Unmodified	_YIIFWDFL_					0	0	0			REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|242|3|anti-sense	REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|242|3|anti-sense	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	558.791861	1115.56917	0.040631	2.2704E-05	2.2258	0.0012438	2.2664	0.0012665	558.7929681205369	54.313	0.49709	54.313	54.008	54.505	0	0.035165	0.00015752	NaN	44.531	29	11	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1427000	+		64518	28386	53198	53248							0.016007165967494075
YIIFWDFL	8	Unmodified	_YIIFWDFL_					0	0	0			REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|242|3|anti-sense	REV__L1MA2_dup7380|chr21:18090778-18094843:+|1.4975105070066153|0.0066367591476119|7.82|422.0|242|3|anti-sense	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	558.791861	1115.56917	0.84182	0.0004704	1.4494	0.00080989	2.2912	0.0012803	558.7925856859284	57.588	0.56099	54.243	54.035	54.596	-3.3449	-0.035165	-0.00071021	NaN	44.531	13	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39058	+		64519	28386	53198	53248							0.016007165967494075
YIIGGYYWH	9	Unmodified	_YIIGGYYWH_					0	0	0		KLHL23|p.R359Sfs*16|1|0.1|ENSG00000213160|chr2:169736090-169736090|G/-|frameshift_variant;KLHL23|p.V371Gfs*9|1|0.02|ENSG00000213160|chr2:169736125-169736126|-/GGTCCAACACATTC|frameshift_variant;ENSG00000213160|ENST00000392647|KLHL23	KLHL23|p.R359Sfs*16|1|0.1|ENSG00000213160|chr2:169736090-169736090|G/-|frameshift_variant	KLHL23|p.R359Sfs*16|1|0.1|ENSG00000213160|chr2:169736090-169736090|G/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	586.8330688476562	2	586.282192	1170.54983	1.586	0.00092981	0.59698	0.00035	2.1829	0.0012798	586.2823351663267	126.54	0.68227	126.54	126.32	127.01	0					26	14	3	0	0	0	0.02744	1	14641	14641		60.404	10.379	1	298130			64520	9119	53199	53249	71016	71016					-0.028622396941500483
YIIGIIGFVL	10	Unmodified	_YIIGIIGFVL_					0	0	0			REV__tr|A0A553SM10|A0A553SM10_NIACIAECfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_21695PE=3SV=1	REV__tr|A0A553SM10|A0A553SM10_NIACIAECfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_21695PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.3152465820312	2	554.344261	1106.67397	0.27425	0.00015203	-0.92646	-0.00051358	-0.65221	-0.00036155	554.3437020258368	114.67	0.23213	114.67	114.6	114.84	0					5	4	2	0	0	0	0.027147	1	13106	13106		19.36	0	1	47337	+		64521	30286	53200	53250	71017	71017					0.12489838073338433
YIIILLPLF	9	Unmodified	_YIIILLPLF_					0	0	0			REV__ENSG00000122375|ENST00000241891|OPN4	REV__ENSG00000122375|ENST00000241891|OPN4	MULTI-SECPEP	OvCa9_classI_Rep3	3	553.8392944335938	2	552.857004	1103.69945	-0.082203	-4.5446E-05	-3.9663	-0.0021928	-4.0485	-0.0022382	552.8546916258977	104.67	1.4007	103.23	102.92	104.32	-1.4347					74	26	4	0	0	0	0.027462	1	7267	7267		29.842	0	1	238130	+		64522	18589	53201	53251	71018	71018					0.15175312595738433
YIIKKFNL	8	Unmodified	_YIIKKFNL_					0	0	0		tr|A0A7D7A2F8|A0A7D7A2F8_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08345PE=4SV=1	tr|A0A7D7A2F8|A0A7D7A2F8_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08345PE=4SV=1	tr|A0A7D7A2F8|A0A7D7A2F8_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08345PE=4SV=1	MSMS	OvCa99_classI_Rep5	1	519.8218383789062	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.11	1	137.11	136.61	137.61	0								0	0	0	0.30129	1	15991	15991		52.299	0	1				64523	36074	53202	53252	71019	71019					0.11004398242016578
YIIKNQKSL	9	Unmodified	_YIIKNQKSL_					0	0	0			REV__tr|A0A7D7A0S5|A0A7D7A0S5_9CLOTRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_12360PE=3SV=1	REV__tr|A0A7D7A0S5|A0A7D7A0S5_9CLOTRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_12360PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8289184570312	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.56889	1	14348	14348		35.618	6.4687	1	245610	+		64524	32456	53203	53253	71020	71020					0.10094577919812764
YIILAFLAF	9	Unmodified	_YIILAFLAF_					0	0	0		tr|A0A553SLU7|A0A553SLU7_NIACIAminoacidpermeaseOS=NialliacirculansOX=1397GN=CEQ21_21345PE=4SV=1	tr|A0A553SLU7|A0A553SLU7_NIACIAminoacidpermeaseOS=NialliacirculansOX=1397GN=CEQ21_21345PE=4SV=1	tr|A0A553SLU7|A0A553SLU7_NIACIAminoacidpermeaseOS=NialliacirculansOX=1397GN=CEQ21_21345PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	535.8142700195312	2	535.817879	1069.6212	-0.3221	-0.00017258	-3.2241	-0.0017275	-3.5462	-0.0019001	535.8161736900166	131.64	1.5686	131.41	131.2	132.77	-0.22697					82	31	4	0	0	0	0.42921	1	12978	12978		49.211	1.2952	1	198290			64525	33766	53204	53254	71021	71021					0.08917880010494628
YIILIWGI	8	Unmodified	_YIILIWGI_					0	0	0		nc|ENSG00000140563|Q6DN12-3|MCTP2;ENST00000456504.5_1_15:94858078-95022260:+|nuORF;nc|ENSG00000140563|Q6DN12-2|MCTP2;ENSG00000140563|ENST00000357742|MCTP2	nc|ENSG00000140563|Q6DN12-3|MCTP2	nc|ENSG00000140563|Q6DN12-3|MCTP2	MULTI-MSMS	OvCa9_classI_Rep3	3	495.802734375	2	495.804771	989.59499	-0.76596	-0.00037977	-3.405	-0.0016882	-4.171	-0.002068	495.8028976709344	116.21	1.7313	115.17	114.9	116.63	-1.0414					66	34	3	0	0	0	0.64315	1	8676	8676		54.895	5.453	1	142870			64526	4861	53205	53255	71022	71022					0.09977610839030149
YIILPKDKL	9	Unmodified	_YIILPKDKL_					0	0	0			REV__tr|A0A7D6VSR5|A0A7D6VSR5_9CLOTLysRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07950PE=3SV=1	REV__tr|A0A7D6VSR5|A0A7D6VSR5_9CLOTLysRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_07950PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.8480834960938	2	551.847167	1101.67978	-0.12124	-6.6904E-05	0.025737	1.4203E-05	-0.0955	-5.2701E-05	551.8470502610511	102.62	1.5182	100.42	99.99	101.51	-2.1994					64	25	4	0	0	0	0.16562	1	9251	9251		82.241	7.1972	1	333260	+		64527	31531	53206	53256	71023	71023					0.13300936584982992
YIIPTIGCIF	10	Unmodified	_YIIPTIGCIF_					0	0	0			REV__tr|A0A553ST10|A0A553ST10_NIACIBranched-chainaminoacidABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_03985PE=4SV=1	REV__tr|A0A553ST10|A0A553ST10_NIACIBranched-chainaminoacidABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_03985PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	570.3118896484375	2	570.312103	1138.60965	2.1852	0.0012463	-2.6929	-0.0015358	-0.50763	-0.00028951	570.3104160088915	120.62	4.1316	120.62	119.65	123.79	0					235	92	4	0	0	0	0.55145	1	13861	13861		47.916	0.25827	1	6526800	+		64528	30902	53207	53257	71024	71024					0.04589314924874088
YIITIIRY	8	Unmodified	_YIITIIRY_					0	0	0		tr|A0A7D6ZGD0|A0A7D6ZGD0_9CLOTDUF4386domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17900PE=4SV=1	tr|A0A7D6ZGD0|A0A7D6ZGD0_9CLOTDUF4386domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17900PE=4SV=1	tr|A0A7D6ZGD0|A0A7D6ZGD0_9CLOTDUF4386domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17900PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.8165893554688	2	527.81841	1053.62227	2.908	0.0015349	-3.3438	-0.0017649	-0.43577	-0.00023001	527.8164130855859	133.06	2.3118	131.53	131.12	133.43	-1.5238					88	45	3	0	0	0	0.62934	1	12834	12834		57.811	0.35863	1	542020			64529	35542	53208	53258	71025	71025					0.09760094379430484
YIITTKKVDSA	11	Unmodified	_YIITTKKVDSA_					0	0	0		tr|A0A7D7A6P8|A0A7D7A6P8_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11600PE=4SV=1	tr|A0A7D7A6P8|A0A7D7A6P8_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11600PE=4SV=1	tr|A0A7D7A6P8|A0A7D7A6P8_9CLOTAlpha/betahydrolaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11600PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	414.2239074707031	3	413.571211	1237.6918	2.5532	0.0010559	0.14223	5.8824E-05	2.6954	0.0011147	413.5717608316729	89.964	0.49597	88.662	88.482	88.978	-1.302					15	9	3	0	0	0	0.025911	1	7943	7943		25.126	2.5463	1	12097			64530	36200	53209	53259	71026	71026					0.08246508537536101
YIKGKTLYEVA	11	Unmodified	_YIKGKTLYEVA_					0	0	0		tr|A0A7D6ZHU6|A0A7D6ZHU6_9CLOTAlkalinephosphatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04320PE=4SV=1	tr|A0A7D6ZHU6|A0A7D6ZHU6_9CLOTAlkalinephosphatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04320PE=4SV=1	tr|A0A7D6ZHU6|A0A7D6ZHU6_9CLOTAlkalinephosphatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04320PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	642.845947265625	2	642.863546	1283.71254	-1.4957	-0.00096153	-0.015745	-1.0122E-05	-1.5115	-0.00097166	642.8634523224106	75.666	0.14766	73.812	73.689	73.837	-1.854					4	2	2	0	0	0	0.025528	1	6229	6229		51.193	31.196	1	48007			64531	35590	53210	53260	71027	71027					0.08203098917169882
YIKGKTLYEVA	11	Unmodified	_YIKGKTLYEVA_					0	0	0		tr|A0A7D6ZHU6|A0A7D6ZHU6_9CLOTAlkalinephosphatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04320PE=4SV=1	tr|A0A7D6ZHU6|A0A7D6ZHU6_9CLOTAlkalinephosphatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04320PE=4SV=1	tr|A0A7D6ZHU6|A0A7D6ZHU6_9CLOTAlkalinephosphatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_04320PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	642.8469848632812	2	642.863546	1283.71254	-0.91244	-0.00058657	0.568	0.00036515	-0.34444	-0.00022143	642.8637573691691	76.325	0.26133	73.954	73.877	74.138	-2.3715					5	4	2	0	0	0	0.025759	1	3930	3930		42.864	13.715	1	21800			64532	35590	53210	53260	71028	71028					0.08203098917169882
YIKHPHLF	8	Unmodified	_YIKHPHLF_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	MULTI-MSMS	OvCa99_classI_Rep5	1	527.7952270507812	2	527.795269	1053.57599	0.51449	0.00027155	1.054	0.00055628	1.5685	0.00082783	527.7955663256482	74.306	1.6558	74.306	73.907	75.563	0					97	41	4	0	0	0	0.40641	1	7361	7361		86.935	18.45	1	6942800			64533	2180	53211	53261	71029	71029					0.051340742679713
YIKHPHLF	8	Unmodified	_YIKHPHLF_					0	0	0		ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	ENSG00000101457|ENST00000372622|DNTTIP1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	527.795269	1053.57599	-1.1006	-0.00058087	4.3065	0.002273	3.206	0.0016921	527.7964595551344	76.872	0.38055	73.933	73.691	74.072	-2.9389	-0.18619	0.0010675	NaN	86.935	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23041			64534	2180	53211	53261							0.051340742679713
YIKHPVSL	8	Unmodified	_YIKHPVSL_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	OvCa99_classI_Rep5	1	478.7828063964844	2	478.781828	955.549102	-0.45767	-0.00021913	4.201	0.0020114	3.7433	0.0017922	478.78190911198004	53.657	0.94549	53.657	53.389	54.334	0					59	22	5	0	0	0	0.063726	2	4268	4268;4291		152.63	69.346	1	4149400			64535	1970	53212	53262	71030;71031	71030					0.06954965656814238
YIKHPVSL	8	Unmodified	_YIKHPVSL_					0	0	0		ENSG00000099341|ENST00000215071|PSMD8;ENST00000592001.5_1_19:38865430-38871817:+|nuORF	ENSG00000099341|ENST00000215071|PSMD8	ENSG00000099341|ENST00000215071|PSMD8	MULTI-MSMS	OvCa99_classI_Rep5	1	478.7827453613281	2	478.781828	955.549102	-0.68302	-0.00032702	-0.20267	-9.7035E-05	-0.8857	-0.00042405	478.7817374634427	66.007	2.291	66.007	65.625	67.916	0					95	57	3	0	0	0	0.04514	4	6102	6074;6102;6131;6174		167.82	71.777	1	12786000			64536	1970	53212	53262	71032;71033;71034;71035	71033					0.06954965656814238
YIKIKRFMYLK	11	Unmodified	_YIKIKRFMYLK_					0	0	0		tr|A0A7D6ZWK4|A0A7D6ZWK4_9CLOTDUF1573domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19270PE=4SV=1	tr|A0A7D6ZWK4|A0A7D6ZWK4_9CLOTDUF1573domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19270PE=4SV=1	tr|A0A7D6ZWK4|A0A7D6ZWK4_9CLOTDUF1573domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19270PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	501.6344909667969	3	501.635381	1501.88431	-6.8749	-0.0034487	3.5802	0.0017959	-3.2948	-0.0016528	501.63750106294935	161.08	3.6355	159.45	157.11	160.75	-1.6239					206	87	3	0	0	0	0.7257	1	15900	15900		6.3209	0.31984	1	47462			64537	35845	53213	53263	71036	71036					0.15344552403871603
YIKKISWDE	9	Unmodified	_YIKKISWDE_					0	0	0		tr|A0A7D6ZEI4|A0A7D6ZEI4_9CLOTC40familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13795PE=4SV=1	tr|A0A7D6ZEI4|A0A7D6ZEI4_9CLOTC40familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13795PE=4SV=1	tr|A0A7D6ZEI4|A0A7D6ZEI4_9CLOTC40familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13795PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	592.3024291992188	2	591.313689	1180.61282	-1.3184	-0.00077961	-3.7867	-0.0022391	-5.1052	-0.0030187	591.3110356894289	81.796	0.24915	79.473	79.359	79.608	-2.3226					5	4	2	0	0	0	0.027461	1	4573	4573		32.812	9.7699	1	8599.6			64538	35483	53214	53264	71037	71037					0.029742813032498816
YIKNSRPE	8	Unmodified	_YIKNSRPE_					0	0	0		ENSG00000169504|ENST00000374379|CLIC4;CLIC4|p.L155Pfs*11|1|0.06|ENSG00000169504|chr1:24839907-24839908|-/CATTTTTCCAGTT|frameshift_variant	ENSG00000169504|ENST00000374379|CLIC4	ENSG00000169504|ENST00000374379|CLIC4	MULTI-SECPEP	OvCa99_classI_Rep5	1	504.7546081542969	2	503.769448	1005.52434	-0.46588	-0.0002347	1.2727	0.00064117	0.80686	0.00040647	503.76936370180744	55.652	0.40422	55.652	55.44	55.845	0					22	9	3	0	0	0	0.028476	1	4561	4561		18.324	0	1	217570			64539	7014	53215	53265	71038	71038					0.021802857834245515
YIKSFGHLN	9	Unmodified	_YIKSFGHLN_					0	0	0			REV__ENST00000569997.1_1_16:85838427-85838718:+|nuORF	REV__ENST00000569997.1_1_16:85838427-85838718:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	538.826416015625	2	539.787641	1077.56073	-0.32866	-0.00017741	3.1308	0.00169	2.8022	0.0015126	539.7892221102476	92.641	1.1321	91.473	91.129	92.261	-1.168					45	20	3	0	0	0	0.027433	1	8207	8207		51.335	25.885	1	349710	+		64540	27732	53216	53266	71039	71039					0.025051626801541715
YIKVFVPSW	9	Unmodified	_YIKVFVPSW_					0	0	0		nc|ENSG00000178199|A2A288-4|ZC3H12D;ENSG00000178199|ENST00000409806|ZC3H12D;ENST00000462655.1_1_6:149782883-149804203:-|nuORF;nc|ENSG00000178199|A2A288-3|ZC3H12D	nc|ENSG00000178199|A2A288-4|ZC3H12D	nc|ENSG00000178199|A2A288-4|ZC3H12D	MULTI-MSMS	OvCa99_classI_Rep5	1	569.8180541992188	2	569.81841	1137.62227	0.33731	0.0001922	-3.8843	-0.0022133	-3.547	-0.0020211	569.8160319018367	67.283	0.43227	67.283	67.096	67.528	0					31	10	4	0	0	0	0.12365	1	6290	6290		90.777	27.798	1	1722500			64541	7738	53217	53267	71040	71040					0.058960943794318155
YIKWFLEK	8	Unmodified	_YIKWFLEK_					0	0	0		ENST00000609835.5_1_20:3193963-3199407:+|nuORF;nc|ENSG00000125877|Q9BY32-3|ITPA;ENST00000490838.6_1_20:3193963-3204105:+|nuORF;nc|ENSG00000125877|Q9BY32-2|ITPA;ENSG00000125877|ENST00000380113|ITPA	ENST00000609835.5_1_20:3193963-3199407:+|nuORF	ENST00000609835.5_1_20:3193963-3199407:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	563.77734375	2	563.81841	1125.62227	1.2817	0.00072267	-0.20648	-0.00011642	1.0753	0.00060625	564.3188898456925	132.35	1.3194	132.35	131.72	133.04	0					32	27	2	0	0	0	0.028476	1	15395	15395		47.916	22.465	1	126080			64542	3749	53218	53268	71041	71041					0.06448094379425129
YILALVLNI	9	Unmodified	_YILALVLNI_					0	0	0			REV__nc|ENSG00000123191|P35670-2|ATP7B	REV__nc|ENSG00000123191|P35670-2|ATP7B	MULTI-SECPEP	OvCa99_classI_Rep5	1	517.3125610351562	2	516.328611	1030.64267	-0.6464	-0.00033375	-2.9838	-0.0015406	-3.6302	-0.0018744	516.3272066175629	66.484	0.20304	66.484	66.328	66.531	0					6	4	2	0	0	0	0.027462	1	6172	6172		24.203	10.427	1	80744	+		64543	18629	53219	53269	71042	71042					0.12857265039201593
YILCPIVVL	9	Unmodified	_YILCPIVVL_					0	0	0			REV__nc|ENSG00000176273|Q2M3R5-2|SLC35G1	REV__nc|ENSG00000176273|Q2M3R5-2|SLC35G1	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.8020629882812	2	516.811739	1031.60893	0.46163	0.00023857	2.3596	0.0012195	2.8212	0.001458	516.8129153117438	109.31	1.0517	108.17	107.82	108.87	-1.1444					42	19	3	0	0	0	0.02744	1	7862	7862		21.702	0	1	166470	+		64544	29020	53220	53270	71043	71043					0.09438520275830342
YILDIAQKTI	10	Unmodified	_YILDIAQKTI_					0	0	0			REV__tr|A0A7D6ZGY8|A0A7D6ZGY8_9CLOTMetal-dependentcarboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00665PE=3SV=1	REV__tr|A0A7D6ZGY8|A0A7D6ZGY8_9CLOTMetal-dependentcarboxypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_00665PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	589.343017578125	2	589.344989	1176.67542	-3.0463	-0.0017953	-0.38122	-0.00022467	-3.4276	-0.00202	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.70152	1	15045	15045		30.318	0	1	272220	+		64545	32012	53221	53271	71044	71044					0.09415427371436635
YILDLSHLY	9	Unmodified	_YILDLSHLY_					0	0	0			REV__ENST00000536649.5_1_19:14208073-14223129:-|nuORF	REV__ENST00000536649.5_1_19:14208073-14223129:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	569.2833251953125	2	568.802957	1135.59136	3.7907	0.0021562	-3.5571	-0.0020233	0.23365	0.0001329	569.303078844468	133.71	0.73325	132.18	131.85	132.59	-1.5257					30	14	3	0	0	0	0.027462	1	12949	12949		10.866	0	1	17684	+		64546	27299	53222	53272	71045	71045					0.028988962745415847
YILDQWEI	8	Unmodified	_YILDQWEI_					0	0	0		ENST00000401044.7_1_1:59134235-59156019:-|nuORF;ENSG00000162601|ENST00000472487|MYSM1;nc|ENSG00000162601|Q5VVJ2-2|MYSM1;ENST00000481973.1_1_1:59142496-59147488:-|nuORF	ENST00000401044.7_1_1:59134235-59156019:-|nuORF	ENST00000401044.7_1_1:59134235-59156019:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.8262939453125	2	540.274032	1078.53351	2.003	0.0010822	4.3493	0.0023498	6.3523	0.003432	540.2762722564843	133.83	0.287	133.83	133.67	133.96	0					6	4	2	0	0	0	0.028476	1	15562	15562		56.721	12.604	1	31716			64547	6200	53223	53273	71046	71046					-0.0026136565090837394
YILIIHSVL	9	Unmodified	_YILIIHSVL_					0	0	0		ENSG00000280021|ENST00000624103|OR51F1	ENSG00000280021|ENST00000624103|OR51F1	ENSG00000280021|ENST00000624103|OR51F1	MULTI-SECPEP	OvCa9_classI_Rep2	2	535.8146362304688	2	535.83406	1069.65357	-0.22231	-0.00011912	-3.829	-0.0020517	-4.0513	-0.0021708	535.8318130251118	131.3	0.69205	131.08	130.85	131.54	-0.22696					22	13	2	0	0	0	0.027462	1	12985	12985		40.573	15.122	1	40667			64548	9600	53224	53274	71047	71047					0.12152667413511153
YILIKDQKV	9	Unmodified	_YILIKDQKV_					0	0	0			REV__ENSG00000008513|ENST00000522652|ST3GAL1	REV__ENSG00000008513|ENST00000522652|ST3GAL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	560.802734375	2	560.342249	1118.66995	2.8349	0.0015885	2.3891	0.0013387	5.2241	0.0029273	560.8460554051355	129.74	0.19818	128.28	128.19	128.39	-1.4565					5	3	2	0	0	0	0.027462	1	12436	12436		25.45	2.4077	1	14118	+		64549	16457	53225	53275	71048	71048					0.11535748579603933
YILIPVLLW	9	Unmodified	_YILIPVLLW_					0	0	0			REV__tr|A0A553SSV8|A0A553SSV8_NIACIProbablemembranetransporterproteinOS=NialliacirculansOX=1397GN=CEQ21_03930PE=3SV=1	REV__tr|A0A553SSV8|A0A553SSV8_NIACIProbablemembranetransporterproteinOS=NialliacirculansOX=1397GN=CEQ21_03930PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	565.35302734375	2	565.354628	1128.6947	1.546	0.00087404	-3.1945	-0.001806	-1.6485	-0.00093196	565.3527711373636	144.35	3.6923	144.35	143.76	147.45	0					246	75	7	0	0	0	0.53728	1	17015	17015		39.021	3.4032	1	6070400	+		64550	30884	53226	53276	71049	71049					0.13550428453004315
YILIYVIM	8	Unmodified	_YILIYVIM_					0	0	0			REV__tr|A0A7D6W108|A0A7D6W108_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01390PE=4SV=1	REV__tr|A0A7D6W108|A0A7D6W108_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_01390PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	514.8156127929688	2	514.298465	1026.58238	0.86773	0.00044627	-0.41825	-0.00021511	0.44948	0.00023117	514.7981341641768	126.55	0.24612	126.32	126.15	126.39	-0.2359					6	4	2	0	0	0	0.028476	1	12354	12354		24.504	0	1	10092	+		64551	31872	53227	53277	71050	71050					0.07014831384481113
YILLAHISD	9	Unmodified	_YILLAHISD_					0	0	0			REV__ENST00000405154.6_1_12:26222190-26222259:+|nuORF	REV__ENST00000405154.6_1_12:26222190-26222259:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.8133544921875	2	522.78985	1043.56515	1.7689	0.00092478	-1.3341	-0.00069745	0.43485	0.00022734	522.7895999595729	137.31	0.2897	137.31	137.11	137.4	0					7	5	2	0	0	0	0.027462	1	15998	15998		12.959	0	1	20075	+		64552	25437	53228	53278	71051	71051					0.04510627103036313
YILLPRIIE	9	Unmodified	_YILLPRIIE_					0	0	0		nc|ENSG00000088836|Q8NBS3-2|SLC4A11;nc|ENSG00000088836|Q8NBS3-5|SLC4A11;ENSG00000088836|ENST00000642402|SLC4A11;nc|ENSG00000088836|Q8NBS3-1|SLC4A11;nc|ENSG00000088836|Q8NBS3-4|SLC4A11	nc|ENSG00000088836|Q8NBS3-2|SLC4A11	nc|ENSG00000088836|Q8NBS3-2|SLC4A11	MULTI-MSMS	OvCa99_classI_Rep5	1	565.3536987304688	2	565.352617	1128.69068	1.546	0.00087404	0.36325	0.00020536	1.9093	0.0010794	565.3527711373636	144.35	3.6923	144.35	143.76	147.45	0					246	75	7	0	0	0	0.091859	2	16916	16916;16987		99.375	25.4	1	6070400			64553	1795	53229	53279	71052;71053	71052					0.13148338959285866
YILMLTSSL	9	Unmodified	_YILMLTSSL_					0	0	0		ENSG00000177468|ENST00000367734|OLIG3	ENSG00000177468|ENST00000367734|OLIG3	ENSG00000177468|ENST00000367734|OLIG3	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2730712890625	2	520.788461	1039.56237	2.5205	0.0013126	1.8836	0.00098098	4.4041	0.0022936	520.7894077105069	89.716	0.33461	89.716	89.556	89.891	0					12	7	2	0	0	0	0.027456	1	9572	9572		30.504	0	1	332010			64554	7685	53230	53280	71054	71054					0.04417035653887069
YILPNLFDN	9	Unmodified	_YILPNLFDN_					0	0	0			REV__tr|A0A553SJ99|A0A553SJ99_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_16370PE=3SV=1	REV__tr|A0A553SJ99|A0A553SJ99_NIACICarbohydrateABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_16370PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	554.7892456054688	2	554.787307	1107.56006	1.8877	0.0010473	1.4304	0.00079359	3.3181	0.0018408	554.7878053175812	134.73	0.98195	134.73	134.47	135.46	0					44	21	3	0	0	0	0.46356	1	15683	15683		45.972	7.1661	1	440680	+		64555	29981	53231	53281	71055	71055					0.010583232404314913
YILRTFIL	8	Unmodified	_YILRTFIL_					0	0	0		ENST00000439326.7_1_19:12189261-12189489:+|nuORF	ENST00000439326.7_1_19:12189261-12189489:+|nuORF	ENST00000439326.7_1_19:12189261-12189489:+|nuORF	MSMS	OvCa99_classI_Rep5	1	519.8223876953125	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.08	1	135.08	134.58	135.58	0								0	0	0	0.30129	1	15732	15732		60.972	0.56831	1				64556	11911	53232	53282	71056	71056					0.11004398242016578
YILRTFIL	8	Unmodified	_YILRTFIL_					0	0	0		ENST00000439326.7_1_19:12189261-12189489:+|nuORF	ENST00000439326.7_1_19:12189261-12189489:+|nuORF	ENST00000439326.7_1_19:12189261-12189489:+|nuORF	MSMS	OvCa99_classI_Rep5	1	519.8226318359375	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.22	1	136.22	135.72	136.72	0								0	0	0	0.30129	1	15879	15879		63.306	2.9026	1				64557	11911	53232	53282	71057	71057					0.11004398242016578
YILRVPLKI	9	Unmodified	_YILRVPLKI_					0	0	0		ENST00000417919.5_3_7:116593594-116738680:+|nuORF;nc|ENSG00000004866|Q9NRC1-7|ST7;nc|ENSG00000004866|Q9NRC1-3|ST7;nc|ENSG00000004866|Q9NRC1-2|ST7;ST7|p.M481Rfs*16|1|0.03|ENSG00000004866|chr7:117229799-117229799|T/-|frameshift_variant;ENSG00000004866|ENST00000323984|ST7;nc|ENSG00000004866|Q9NRC1|ST7	ENST00000417919.5_3_7:116593594-116738680:+|nuORF	ENST00000417919.5_3_7:116593594-116738680:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	557.8722534179688	2	557.870977	1113.7274	1.9243	0.0010735	-0.081278	-4.5343E-05	1.843	0.0010281	557.8706609023681	107.13	0.46626	107.13	106.89	107.36	0					26	10	3	0	0	0	0.21395	1	12080	12080		73.975	10.668	1	1073900			64558	836	53233	53283	71058	71058					0.17508635575836706
YILSLRYH	8	Unmodified	_YILSLRYH_					0	0	0			REV__tr|A0A553SNJ6|A0A553SNJ6_NIACIImmA/IrrEfamilymetallo-endopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_24570PE=4SV=1	REV__tr|A0A553SNJ6|A0A553SNJ6_NIACIImmA/IrrEfamilymetallo-endopeptidaseOS=NialliacirculansOX=1397GN=CEQ21_24570PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	533.3128662109375	2	532.798009	1063.58147	0.035413	1.8868E-05	-3.6311	-0.0019346	-3.5956	-0.0019158	532.7957787305675	46.739	0.34943	46.739	46.545	46.894	0					11	7	2	0	0	0	0.028476	1	3322	3322		33.516	1.5607	1	215320	+		64559	30427	53234	53284	71059	71059					0.052217530597772566
YILSRPVVT	9	Unmodified	_YILSRPVVT_					0	0	0			REV__ENST00000367091.7_1_1:207078149-207078371:-|nuORF	REV__ENST00000367091.7_1_1:207078149-207078371:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	524.7662353515625	2	524.313492	1046.61243	0.14762	7.7397E-05	-1.4068	-0.00073763	-1.2592	-0.00066023	524.8133286041402	129.91	0.79163	128.8	128.39	129.18	-1.1121					18	15	2	0	0	0	0.027462	1	10256	10256		35.618	6.4687	1	28751	+		64560	24890	53235	53285	71060	71060					0.09098906374038052
YILVPLSHL	9	Unmodified	_YILVPLSHL_					0	0	0		nc|ENSG00000170820|P23945-2|FSHR;nc|ENSG00000170820|P23945-3|FSHR;ENSG00000170820|ENST00000406846|FSHR;nc|ENSG00000170820|P23945-4|FSHR	nc|ENSG00000170820|P23945-2|FSHR	nc|ENSG00000170820|P23945-2|FSHR	MULTI-MSMS	OvCa9_classI_Rep2	2	527.81787109375	2	527.81841	1053.62227	0.15404	8.1304E-05	-0.13429	-7.0882E-05	0.019746	1.0422E-05	527.8180746611931	131.65	2.3091	131.42	131.15	133.46	-0.22696					124	46	4	0	0	0	0.27546	2	12983	12976;12983		65.803	15.779	1	610490			64561	7139	53236	53286	71061;71062	71062					0.09760094379430484
YILVPLSHL	9	Unmodified	_YILVPLSHL_					0	0	0		nc|ENSG00000170820|P23945-2|FSHR;nc|ENSG00000170820|P23945-3|FSHR;ENSG00000170820|ENST00000406846|FSHR;nc|ENSG00000170820|P23945-4|FSHR	nc|ENSG00000170820|P23945-2|FSHR	nc|ENSG00000170820|P23945-2|FSHR	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.8175048828125	2	527.81841	1053.62227	2.908	0.0015349	-3.3438	-0.0017649	-0.43577	-0.00023001	527.8164130855859	133.06	2.3118	131.53	131.12	133.43	-1.5238					88	45	3	0	0	0	0.53957	1	12860	12860		38.806	1.647	1	542020			64562	7139	53236	53286	71063	71063					0.09760094379430484
YILVSGLS	8	Unmodified	_YILVSGLS_					0	0	0		nc|ENSG00000065534|Q15746-5|MYLK;nc|ENSG00000065534|Q15746-2|MYLK;nc|ENSG00000065534|Q15746-6|MYLK;ENSG00000065534|ENST00000360304|MYLK;nc|ENSG00000065534|Q15746-11|MYLK;nc|ENSG00000065534|Q15746-7|MYLK;nc|ENSG00000065534|Q15746-9|MYLK	nc|ENSG00000065534|Q15746-5|MYLK	nc|ENSG00000065534|Q15746-5|MYLK	MULTI-MSMS	OvCa9_classI_Rep3	3	426.2457580566406	2	426.247286	850.48002	-1.1759	-0.00050123	-1.8651	-0.00079498	-3.041	-0.0012962	426.2464135300909	139.12	1.5749	138.06	137.54	139.11	-1.0595					80	31	4	0	0	0	0.75991	1	11475	11475		21.702	0	1	422340			64563	1330	53237	53287	71064	71064					0.04879881637236849
YILYGDYSL	9	Unmodified	_YILYGDYSL_					0	0	0		tr|A0A7D6ZXG2|A0A7D6ZXG2_9CLOTLacIfamilyDNA-bindingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_21810PE=4SV=1	tr|A0A7D6ZXG2|A0A7D6ZXG2_9CLOTLacIfamilyDNA-bindingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_21810PE=4SV=1	tr|A0A7D6ZXG2|A0A7D6ZXG2_9CLOTLacIfamilyDNA-bindingtranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_21810PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	553.77490234375	2	553.773865	1105.53318	-0.014018	-7.763E-06	2.5684	0.0014223	2.5544	0.0014145	553.775236159291	30.805	0.58924	30.805	30.582	31.171	0					18	11	3	0	0	0	0.52083	1	1214	1214		40.573	1.3198	1	191320			64564	35880	53238	53288	71065	71065					-0.015367853707630275
YILYLRTL	8	Unmodified	_YILYLRTL_					0	0	0		ENST00000601476.1_1_19:42462288-42463399:-|nuORF;ENSG00000105404|ENST00000222008|RABAC1	ENST00000601476.1_1_19:42462288-42463399:-|nuORF	ENST00000601476.1_1_19:42462288-42463399:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	527.8177490234375	2	527.81841	1053.62227	0.15404	8.1304E-05	-0.13429	-7.0882E-05	0.019746	1.0422E-05	527.8180746611931	131.65	2.3091	131.42	131.15	133.46	-0.22696					124	46	4	0	0	0	0.62934	1	12989	12989		57.811	3.0466	1	610490			64565	2454	53239	53289	71066	71066					0.09760094379430484
YILYLRTL	8	Unmodified	_YILYLRTL_					0	0	0		ENST00000601476.1_1_19:42462288-42463399:-|nuORF;ENSG00000105404|ENST00000222008|RABAC1	ENST00000601476.1_1_19:42462288-42463399:-|nuORF	ENST00000601476.1_1_19:42462288-42463399:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	527.8182373046875	2	527.81841	1053.62227	-0.62231	-0.00032847	1.4033	0.00074071	0.78103	0.00041224	527.8186129379317	132.72	1.4756	131.6	131.24	132.71	-1.1249					60	29	3	0	0	0	0.7224	1	10632	10632		38.806	0	1	124870			64566	2454	53239	53289	71067	71067					0.09760094379430484
YIMLEEKRS	9	Unmodified	_YIMLEEKRS_					0	0	0		tr|A0A7D6ZWU7|A0A7D6ZWU7_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20490PE=4SV=1	tr|A0A7D6ZWU7|A0A7D6ZWU7_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20490PE=4SV=1	tr|A0A7D6ZWU7|A0A7D6ZWU7_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20490PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	584.8045043945312	2	584.805174	1167.59579	1.3935	0.00081493	-1.6791	-0.00098196	-0.2856	-0.00016702	584.8038530049763	135.48	0.55759	135.48	134.95	135.5	0					15	11	2	0	0	0	0.12365	1	15767	15767		90.777	0.40684	1	1833400			64567	35856	53240	53290	71068	71068					0.018700374257832664
YINAVIGNVL	10	Unmodified	_YINAVIGNVL_					0	0	0		OR4C13|p.M37V|1|0.25|ENSG00000258817|chr11:49952531-49952531|A/G|missense_variant	OR4C13|p.M37V|1|0.25|ENSG00000258817|chr11:49952531-49952531|A/G|missense_variant	OR4C13|p.M37V|1|0.25|ENSG00000258817|chr11:49952531-49952531|A/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	538.3101806640625	2	538.310949	1074.60735	-0.75668	-0.00040733	-0.30054	-0.00016179	-1.0572	-0.00056911	538.3104984778253	106.9	1.3198	106.59	106.32	107.64	-0.30836					69	26	4	0	0	0	0.58282	1	9972	9972		44.117	6.9577	1	342170			64568	15456	53241	53291	71069	71069					0.0730260251141317
YINEEILPK	9	Unmodified	_YINEEILPK_					0	0	0		tr|A0A553SHE8|A0A553SHE8_NIACI4-amino-4-deoxychorismatelyaseOS=NialliacirculansOX=1397GN=pabCPE=3SV=1	tr|A0A553SHE8|A0A553SHE8_NIACI4-amino-4-deoxychorismatelyaseOS=NialliacirculansOX=1397GN=pabCPE=3SV=1	tr|A0A553SHE8|A0A553SHE8_NIACI4-amino-4-deoxychorismatelyaseOS=NialliacirculansOX=1397GN=pabCPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.278076171875	2	559.808239	1117.60193	-0.14468	-8.0995E-05	-3.9607	-0.0022172	-4.1054	-0.0022982	559.8059635145083	37.775	0.55201	37.775	37.344	37.896	0					16	11	3	0	0	0	0.027462	1	2077	2077		29.15	7.1897	1	132250			64569	33261	53242	53292	71070	71070					0.04782878928926948
YINEFIEPQ	9	Unmodified	_YINEFIEPQ_					0	0	0			REV__nc|ENSG00000147231|Q6NSI4-3|RADX	REV__nc|ENSG00000147231|Q6NSI4-3|RADX	MULTI-MSMS	OvCa99_classI_Rep5	1	576.783447265625	2	576.782222	1151.54989	1.1516	0.00066423	1.1014	0.00063527	2.253	0.0012995	576.782711674528	109.88	0.63107	109.88	109.64	110.27	0					25	13	2	0	0	0	0.18193	1	12458	12458		79.451	2.6769	1	1100500	+		64570	20053	53243	53293	71071	71071					-0.019822844848249588
YINEFIEPQ	9	Unmodified	_YINEFIEPQ_					0	0	0			REV__nc|ENSG00000147231|Q6NSI4-3|RADX	REV__nc|ENSG00000147231|Q6NSI4-3|RADX	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	576.782222	1151.54989	1.1516	0.00066423	1.1014	0.00063527	2.253	0.0012995	576.782711674528	109.88	0.63107	109.88	109.64	110.27	0	0	0	NaN	79.451	25	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1100500	+		64571	20053	53243	53293							-0.019822844848249588
YINKIYIK	8	Unmodified	_YINKIYIK_					0	0	0			REV__tr|A0A7D6W3W5|A0A7D6W3W5_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11525PE=4SV=1	REV__tr|A0A7D6W3W5|A0A7D6W3W5_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11525PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.8170776367188	2	527.81841	1053.62227	2.908	0.0015349	-3.3438	-0.0017649	-0.43577	-0.00023001	527.8164130855859	133.06	2.3118	131.53	131.12	133.43	-1.5238					88	45	3	0	0	0	0.73288	1	12847	12847		35.201	0	1	542020	+		64572	31925	53244	53294	71072	71072					0.09760094379407747
YINLISILY	9	Unmodified	_YINLISILY_					0	0	0		ENSG00000131043|ENST00000320849|AAR2	ENSG00000131043|ENST00000320849|AAR2	ENSG00000131043|ENST00000320849|AAR2	MULTI-MSMS	OvCa9_classI_Rep4_	4	556.3228759765625	2	556.323525	1110.6325	-0.97737	-0.00054373	0.7636	0.00042481	-0.21377	-0.00011892	556.3237904713112	126.92	1.6681	125.48	125.15	126.81	-1.4357					83	32	4	0	0	0	0.31747	1	12103	12103		60.972	6.2073	1	275220			64573	4041	53245	53295	71073	71073					0.08160657314010678
YINLKYATL	9	Unmodified	_YINLKYATL_					0	0	0			REV__ENST00000523153.2_1_8:54885384-54885555:+|nuORF	REV__ENST00000523153.2_1_8:54885384-54885555:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	549.8126831054688	2	549.813325	1097.6121	-0.0044442	-2.4435E-06	-3.4711	-0.0019085	-3.4756	-0.0019109	549.8113050570199	62.521	1.2113	62.521	62.165	63.376	0					92	29	5	0	0	0	0.31747	1	5585	5585		60.972	0.85368	1	9998900	+		64574	27090	53246	53296	71074	71074					0.06719486654174034
YINLKYATL	9	Unmodified	_YINLKYATL_					0	0	0			REV__ENST00000523153.2_1_8:54885384-54885555:+|nuORF	REV__ENST00000523153.2_1_8:54885384-54885555:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	549.8126831054688	2	549.813325	1097.6121	1.0707	0.00058869	-2.5432	-0.0013983	-1.4724	-0.00080957	549.8118594915368	65.959	2.5762	63.264	62.872	65.448	-2.6958					98	51	2	0	0	0	0.18193	1	5124	5124		79.451	6.5718	1	960460	+		64575	27090	53246	53296	71075	71075					0.06719486654174034
YINLRGPIPA	10	Unmodified	_YINLRGPIPA_					0	0	0		ENST00000582678.5_1_17:61557143-61562826:+|nuORF;nc|ENSG00000159640|P12821-2|ACE;ENSG00000159640|ENST00000290866|ACE	ENST00000582678.5_1_17:61557143-61562826:+|nuORF	ENST00000582678.5_1_17:61557143-61562826:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	557.3271484375	2	557.324391	1112.63423	2.0884	0.0011639	3.4387	0.0019165	5.5271	0.0030804	557.3261373762572	127.93	2.5063	127.93	127.36	129.87	0					116	53	4	0	0	0	0.41408	1	14790	14790		66.429	20.477	1	963050			64576	6022	53247	53297	71076	71076					0.08241711122627748
YINTDHKL	8	Unmodified	_YINTDHKL_					0	0	0			REV__ENST00000415495.5_1_19:42311603-42315272:+|nuORF	REV__ENST00000415495.5_1_19:42311603-42315272:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	502.2681579589844	2	502.263999	1002.51345	-0.67805	-0.00034056	3.7454	0.0018812	3.0673	0.0015406	502.2656711745372	59.211	0.63674	59.211	59.011	59.647	0					36	16	3	0	0	0	0.50674	1	5082	5082		76.847	5.5509	1	3812600	+		64577	21582	53248	53298	71077	71077					0.012288834091350509
YIPFYQVKYNN	11	Unmodified	_YIPFYQVKYNN_					0	0	0			REV__tr|A0A7D6VSZ7|A0A7D6VSZ7_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11170PE=4SV=1	REV__tr|A0A7D6VSZ7|A0A7D6VSZ7_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11170PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	482.7470397949219	3	483.578477	1447.7136	-0.93924	-0.0004542	-1.9574	-0.00094656	-2.8967	-0.0014008	483.577114757168	53.454	0.92072	50.246	49.995	50.915	-3.208					38	17	3	0	0	0	0.02625	1	3320	3320		18.531	5.5736	1	51080	+		64578	31559	53249	53299	71078	71078					0.00765313286115088
YIPFYQVKYNN	11	Unmodified	_YIPFYQVKYNN_					0	0	0			REV__tr|A0A7D6VSZ7|A0A7D6VSZ7_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11170PE=4SV=1	REV__tr|A0A7D6VSZ7|A0A7D6VSZ7_9CLOTGNATfamilyN-acetyltransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11170PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	483.578477	1447.7136	-1.2863	-0.00062204	-2.2996	-0.001112	-3.5859	-0.0017341	483.57723951719237	53.149	1.038	50.335	49.887	50.925	-2.8139	0.044517	-0.00016912	NaN	12.957	31	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	27933	+		64579	31559	53249	53299							0.00765313286115088
YIPGLPLFV	9	Unmodified	_YIPGLPLFV_					0	0	0		HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|135|1|anti-sense	HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|135|1|anti-sense	HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|135|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep3	3	509.80328369140625	2	509.802229	1017.5899	-1.31	-0.00066782	4.1509	0.0021161	2.841	0.0014483	509.8042643330041	136.2	5.0003	135.09	133.67	138.67	-1.1076					223	101	3	0	0	0	0.68641	1	11061	11061		21.702	0.7554	1	99460			64580	14463	53250	53300	71079	71079					0.08181306976428004
YIPKYFFF	8	Unmodified	_YIPKYFFF_					0	0	0		L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|240|1|anti-sense	L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|240|1|anti-sense	L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|240|1|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	562.7930297851562	2	562.794404	1123.57425	2.6768	0.0015065	-4.3512	-0.0024488	-1.6744	-0.00094236	562.7918950148166	137.28	0.67621	137.28	137.01	137.69	0					33	13	4	0	0	0	0.64377	1	16015	16015		54.765	4.7401	1	163380			64581	14691	53251	53301	71080	71080					0.017410204593716117
YIPMYTEEL	9	Oxidation (M)	_YIPM(Oxidation (M))YTEEL_		YIPM(1)YTEEL		YIPM(50)YTEEL	0	0	1			REV__tr|A0A7D6ZNX4|A0A7D6ZNX4_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_18025PE=4SV=1	REV__tr|A0A7D6ZNX4|A0A7D6ZNX4_9CLOTGntRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_18025PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	587.772705078125	2	587.770465	1173.52638	1.5171	0.0008917	1.4576	0.00085671	2.9746	0.0017484	587.7712196945814	127.28	1.0386	127.28	127.01	128.04	0					70	22	4	0	0	0	0.42057	1	14717	14717		50.025	9.2464	1	1253500	+		64582	32125	53252	53302	71081	71081		714			-0.05344466313658813
YIPTLEPVS	9	Unmodified	_YIPTLEPVS_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;TTN|p.A30902Cfs*9|1|0.13|ENSG00000155657|chr2:178541450-178541451|-/A|frameshift_variant;TTN|p.D29641Kfs*14|1|0.07|ENSG00000155657|chr2:178547783-178547784|-/AGAATTGTATTACGTTCTTT|frameshift_variant;TTN|p.T29195Kfs*3|1|0.04|ENSG00000155657|chr2:178549119-178549119|G/-|frameshift_variant;TTN|p.L29632Hfs*2|1|0.03|ENSG00000155657|chr2:178547813-178547814|-/TA|frameshift_variant;TTN|p.T29630Ifs*12|1|0.03|ENSG00000155657|chr2:178547814-178547815|-/A|frameshift_variant;nc|ENSG00000155657|Q8WZ42-4|TTN;TTN|p.V29729Sfs*26|1|0.25|ENSG00000155657|chr2:178547519-178547519|T/-|frameshift_variant;TTN|p.P29906Sfs*3|1|0.14|ENSG00000155657|chr2:178546788-178546789|GG/-|frameshift_variant;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;TTN|p.Y26787Dfs*24|1|0.13|ENSG00000155657|chr2:178560850-178560851|-/CACAAGACATTGGGTACTGGTC|frameshift_variant;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;TTN|p.T24905Vfs*36|1|0.03|ENSG00000155657|chr2:178566497-178566498|-/GAATTCTGGCAGATCCACCAGCTCTTACA|frameshift_variant;nc|ENSG00000155657|Q8WZ42-3|TTN;TTN|p.K24185Sfs*13|1|0.09|ENSG00000155657|chr2:178568655-178568655|T/-|frameshift_variant;TTN|p.L22574Afs*14|1|0.2|ENSG00000155657|chr2:178573489-178573490|-/AGTTTTTTTGTTGCATTTAATCCAGCGTTGGC|frameshift_variant;TTN|p.G22029Efs*22|1|0.38|ENSG00000155657|chr2:178575123-178575123|C/-|frameshift_variant;TTN|p.E20021Dfs*34|1|0.15|ENSG00000155657|chr2:178584565-178584565|T/-|frameshift_variant;TTN|p.D18828Afs*11|1|0.06|ENSG00000155657|chr2:178590319-178590320|-/G|frameshift_variant;TTN|p.K15149Rfs*5|1|0.07|ENSG00000155657|chr2:178611942-178611942|C/-|frameshift_variant;TTN|p.P12974Lfs*4|1|0.05|ENSG00000155657|chr2:178631204-178631205|-/GTACA|frameshift_variant;TTN|p.E11597Rfs*5|1|0.5|ENSG00000155657|chr2:178651954-178651954|A/-|frameshift_variant;TTN|p.R11195Efs*5|1|0.15|ENSG00000155657|chr2:178674318-178674318|A/-|frameshift_variant;TTN|p.E9011Nfs*14|1|0.03|ENSG00000155657|chr2:178711255-178711255|T/-|frameshift_variant;TTN|p.G8550Tfs*3|1|0.05|ENSG00000155657|chr2:178714032-178714059|ATTTGTTGTCACTTGTTAGCTCTTTTCC/-|frameshift_variant;TTN|p.S7694Qfs*32|1|0.04|ENSG00000155657|chr2:178719360-178719360|G/-|frameshift_variant;TTN|p.C7689Pfs*18|1|0.03|ENSG00000155657|chr2:178719373-178719374|CA/-|frameshift_variant;TTN|p.L7641Yfs*6|1|0.07|ENSG00000155657|chr2:178719621-178719621|T/-|frameshift_variant;TTN|p.T6904Lfs*6|1|0.08|ENSG00000155657|chr2:178723439-178723439|T/-|frameshift_variant;TTN|p.V5150Afs*3|1|0.06|ENSG00000155657|chr2:178732661-178732661|A/-|frameshift_variant;TTN|p.R4157*|1|0.07|ENSG00000155657|chr2:178739814-178739815|-/C|frameshift_variant;TTN|p.E3802Dfs*59|1|0.05|ENSG00000155657|chr2:178740876-178740877|-/GAAGTAACAAGGTACATGCACATGATGTG|frameshift_variant;nc|ENSG00000155657|Q8WZ42-6|TTN;TTN|p.L3483Ifs*33|1|0.11|ENSG00000155657|chr2:178741835-178741836|-/AT|frameshift_variant;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN;TTN|p.I29382Tfs*15|1|0.03|ENSG00000155657|chr2:178548558-178548559|-/CACCACATAGTCTTTGTTGACACGTG|frameshift_variant	ENSG00000155657|ENST00000589042|TTN	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.3096618652344	2	509.776408	1017.53826	-2.191	-0.0011169	1.5134	0.00077148	-0.67762	-0.00034544	509.777204570449	126.77	0.64433	125.35	125.01	125.66	-1.4209					17	12	2	0	0	0	0.027462	1	12037	12037		15.642	0	1	13051			64583	5793;36288	53253	53303	71082	71082					0.030195184918625273
YIQFSIGLD	9	Unmodified	_YIQFSIGLD_					0	0	0			REV__CUL2|p.R669Efs*16|1|0.13|ENSG00000108094|chr10:35011950-35011950|A/-|frameshift_variant	REV__CUL2|p.R669Efs*16|1|0.13|ENSG00000108094|chr10:35011950-35011950|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	527.3550415039062	2	528.274032	1054.53351	-0.2635	-0.0001392	-3.2699	-0.0017274	-3.5334	-0.0018666	528.2722153328859	133.75	0.6899	133.52	133.21	133.9	-0.22697					19	13	2	0	0	0	0.027462	1	13218	13218		35.618	17.294	1	13618	+		64584	16258	53254	53304	71083	71083					0.008426343491009902
YIQFSIGLD	9	Unmodified	_YIQFSIGLD_					0	0	0			REV__CUL2|p.R669Efs*16|1|0.13|ENSG00000108094|chr10:35011950-35011950|A/-|frameshift_variant	REV__CUL2|p.R669Efs*16|1|0.13|ENSG00000108094|chr10:35011950-35011950|A/-|frameshift_variant	MULTI-MATCH	OvCa99_classI_Rep5	1		2	528.274032	1054.53351	1.6529	0.00087317	0.32042	0.00016927	1.9733	0.0010424	528.2741626035623	133.55	0.45892	133.55	133.26	133.72	0	0.12323	0.0042896	NaN	35.618	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	63697	+		64585	16258	53254	53304							0.008426343491009902
YIQFSIGLD	9	Unmodified	_YIQFSIGLD_					0	0	0			REV__CUL2|p.R669Efs*16|1|0.13|ENSG00000108094|chr10:35011950-35011950|A/-|frameshift_variant	REV__CUL2|p.R669Efs*16|1|0.13|ENSG00000108094|chr10:35011950-35011950|A/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	528.274032	1054.53351	2.2904	0.00121	-6.3769	-0.0033688	-4.0865	-0.0021588	528.2707529814486	134.75	0.74228	133.2	132.97	133.71	-1.5437	-0.22003	-0.0027865	NaN	35.618	19	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34522	+		64586	16258	53254	53304							0.008426343491009902
YIQGTPVSVHV	11	Unmodified	_YIQGTPVSVHV_					0	0	0		SEMA6D|p.L1021V|1|0.07|ENSG00000137872|chr15:47771624-47771624|C/G|missense_variant	SEMA6D|p.L1021V|1|0.07|ENSG00000137872|chr15:47771624-47771624|C/G|missense_variant	SEMA6D|p.L1021V|1|0.07|ENSG00000137872|chr15:47771624-47771624|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	600.3231201171875	2	600.324588	1198.63462	-2.9074	-0.0017454	1.1557	0.00069379	-1.7518	-0.0010516	600.3251735089444	151.69	1.358	150.74	150.35	151.71	-0.95645					71	26	4	0	0	0	0.69081	1	12937	12937		32.812	3.6629	1	229880			64587	32809	53255	53305	71084	71084					0.043250860517900946
YIQIERQKILK	11	Unmodified	_YIQIERQKILK_					0	0	0		ENSG00000132274|ENST00000379965|TRIM22	ENSG00000132274|ENST00000379965|TRIM22	ENSG00000132274|ENST00000379965|TRIM22	MULTI-MSMS	OvCa9_classI_Rep2	2	477.95904541015625	3	477.960921	1430.86093	-5.0293	-0.0024038	1.2478	0.00059639	-3.7816	-0.0018074	477.96128633611335	158.76	1.3288	158.54	157.62	158.95	-0.22696					57	34	3	0	0	0	0.7257	1	16117	16117		6.3209	0	1	44261			64588	4120	53256	53306	71085	71085					0.16273829890883462
YIQNFRFF	8	Unmodified	_YIQNFRFF_					0	0	0		ENSG00000204084|ENST00000373024|INPP5B;nc|ENSG00000204084|P32019|INPP5B;nc|ENSG00000204084|P32019-3|INPP5B;nc|ENSG00000204084|P32019-4|INPP5B;INPP5B-TRIT1|1|fusion	ENSG00000204084|ENST00000373024|INPP5B	ENSG00000204084|ENST00000373024|INPP5B	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.2472534179688	2	567.790184	1133.56581	0.074879	4.2516E-05	0.0071753	4.074E-06	0.082054	4.659E-05	567.7900302429098	68.753	0.66372	68.753	68.564	69.228	0					29	15	3	0	0	0	0.028476	1	6503	6503		35.201	8.5078	1	2168800			64589	8946	53257	53307	71086	71086					0.004374665427576474
YIQPIHIDE	9	Unmodified	_YIQPIHIDE_					0	0	0			REV__ENSG00000083720|ENST00000196371|OXCT1	REV__ENSG00000083720|ENST00000196371|OXCT1	MULTI-MSMS	OvCa99_classI_Rep5	1	564.2980346679688	2	564.290214	1126.56587	-1.8297	-0.0010325	-0.60681	-0.00034242	-2.4365	-0.0013749	564.2898062230407	103.86	0.98315	103.86	103.55	104.54	0					56	22	4	0	0	0	0.16524	1	11612	11612		82.305	2.5924	1	2063400	+		64590	17108	53258	53308	71087	71087					0.007654217521121609
YIQPIHIDE	9	Unmodified	_YIQPIHIDE_					0	0	0			REV__ENSG00000083720|ENST00000196371|OXCT1	REV__ENSG00000083720|ENST00000196371|OXCT1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	564.290214	1126.56587	-0.45005	-0.00025396	-1.5127	-0.00085361	-1.9628	-0.0011076	564.2893657810033	104.19	0.64529	103.61	103.37	104.02	-0.57639	-0.040478	-0.00083975	NaN	82.305	14	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22445	+		64591	17108	53258	53308							0.007654217521121609
YIQPIHIDE	9	Unmodified	_YIQPIHIDE_					0	0	0			REV__ENSG00000083720|ENST00000196371|OXCT1	REV__ENSG00000083720|ENST00000196371|OXCT1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	564.290214	1126.56587	0.14723	8.3082E-05	-1.5261	-0.00086114	-1.3788	-0.00077806	564.2892440682509	104.93	0.52151	103.58	103.42	103.94	-1.3482	-0.072032	-0.00085481	NaN	82.305	14	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	13937	+		64592	17108	53258	53308							0.007654217521121609
YIQPIHIDE	9	Unmodified	_YIQPIHIDE_					0	0	0			REV__ENSG00000083720|ENST00000196371|OXCT1	REV__ENSG00000083720|ENST00000196371|OXCT1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	564.290214	1126.56587	1.0926	0.00061654	-3.3376	-0.0018834	-2.245	-0.0012669	564.2880034781513	105.57	0.70138	103.55	103.3	104	-2.0161	-0.096919	-0.0028993	NaN	82.305	17	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14244	+		64593	17108	53258	53308							0.007654217521121609
YIQRRGEVLA	10	Unmodified	_YIQRRGEVLA_					0	0	0			REV__ENST00000578036.5_1_17:62775732-62776705:-|nuORF	REV__ENST00000578036.5_1_17:62775732-62776705:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	602.8440551757812	2	602.843479	1203.67241	0.26914	0.00016225	-0.93998	-0.00056666	-0.67085	-0.00040442	602.8429266469971	32.868	1.0296	32.868	32.651	33.681	0					51	20	5	0	0	0	0.52162	1	1490	1490		31.53	0	1	2612000	+		64594	27799	53259	53309	71088	71088					0.07871597037296851
YIRDRIEEI	9	Unmodified	_YIRDRIEEI_					0	0	0		ENSG00000106809|ENST00000375561|OGN	ENSG00000106809|ENST00000375561|OGN	ENSG00000106809|ENST00000375561|OGN	MULTI-MSMS	OvCa9_classI_Rep3	3	603.8273315429688	2	603.827495	1205.64044	1.8662	0.0011268	-2.2456	-0.001356	-0.37946	-0.00022913	603.826002226162	72.798	1.9337	70.31	69.934	71.868	-2.4873					100	38	4	0	0	0	0.2422	1	3501	3501		69.628	2.134	1	458040			64595	2575	53260	53310	71089	71089					0.04584184563486815
YIRDRIEEI	9	Unmodified	_YIRDRIEEI_					0	0	0		ENSG00000106809|ENST00000375561|OGN	ENSG00000106809|ENST00000375561|OGN	ENSG00000106809|ENST00000375561|OGN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	603.827495	1205.64044	-0.34554	-0.00020864	0.12086	7.298E-05	-0.22468	-0.00013567	603.8274771424394	72.569	1.6728	70.17	69.75	71.422	-2.3999	-0.070416	0.001357	NaN	69.628	85	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	284700			64596	2575	53260	53310							0.04584184563486815
YIRERLPK	8	Unmodified	_YIRERLPK_					0	0	0		sp|Q6SW62|SCAF_HCMVMCapsidscaffoldingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL80PE=3SV=1;sp|P16753|SCAF_HCMVACapsidscaffoldingproteinOS=Humancytomegalovirus(strainAD169)OX=10360GN=UL80PE=1SV=1	sp|Q6SW62|SCAF_HCMVMCapsidscaffoldingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL80PE=3SV=1	sp|Q6SW62|SCAF_HCMVMCapsidscaffoldingproteinOS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL80PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.7601318359375	2	537.824558	1073.63456	0.086995	4.6788E-05	2.5817	0.0013885	2.6687	0.0014353	537.8256952117276	65.066	0.31467	65.066	64.916	65.231	0					10	7	2	0	0	0	0.028476	1	5963	5963		18.324	3.4595	1	155200			64597	32895	53261	53311	71090	71090					0.10069130842452978
YIRGSKIRF	9	Unmodified	_YIRGSKIRF_					0	0	0		ENSG00000100028|ENST00000215829|SNRPD3;nc|ENSG00000286070|P62318-2|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	ENSG00000100028|ENST00000215829|SNRPD3	MULTI-MSMS	OvCa99_classI_Rep5	1	570.3405151367188	2	570.337833	1138.66111	0.2748	0.00015673	-1.0633	-0.00060641	-0.78846	-0.00044969	570.3369710490379	63.486	1.0701	63.486	63.14	64.21	0					69	26	4	0	0	0	0.27001	1	5705	5705		66.429	13.078	1	5539200			64598	1995	53262	53312	71091	71091					0.09732819733812903
YIRNKLVIV	9	Unmodified	_YIRNKLVIV_					0	0	0			REV__WDR45|p.V125A|1|0.07|ENSG00000196998|chrX:49076492-49076492|A/G|missense_variant	REV__WDR45|p.V125A|1|0.07|ENSG00000196998|chrX:49076492-49076492|A/G|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.3557739257812	2	559.358234	1116.70191	2.5254	0.0014126	-0.10437	-5.8382E-05	2.421	0.0013542	559.3581274198779	100.03	0.70834	100.03	99.736	100.44	0					29	16	2	0	0	0	0.027462	1	11099	11099		30.504	20.798	1	1376900	+		64599	22884	53263	53313	71092	71092					0.14823161053391232
YIRPFVISTQ	10	Unmodified	_YIRPFVISTQ_					0	0	0		tr|A0A553SMT3|A0A553SMT3_NIACIBranched-chain-amino-acidaminotransferaseOS=NialliacirculansOX=1397GN=CEQ21_23025PE=3SV=1	tr|A0A553SMT3|A0A553SMT3_NIACIBranched-chain-amino-acidaminotransferaseOS=NialliacirculansOX=1397GN=CEQ21_23025PE=3SV=1	tr|A0A553SMT3|A0A553SMT3_NIACIBranched-chain-amino-acidaminotransferaseOS=NialliacirculansOX=1397GN=CEQ21_23025PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	408.5487976074219	3	408.564279	1222.67101	0.54969	0.00022458	-3.1566	-0.0012897	-2.6069	-0.0010651	408.5631244957914	40.037	1.0835	40.037	39.798	40.881	0					25	23	2	0	0	0	0.026906	1	2442	2442		6.6596	0	1	111700			64600	33869	53264	53314	71093	71093					0.06857962948515706
YIRQEGRS	8	Unmodified	_YIRQEGRS_					0	0	0			REV__tr|A0A553SHN1|A0A553SHN1_NIACIGlycosyltransferasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_13270PE=4SV=1	REV__tr|A0A553SHN1|A0A553SHN1_NIACIGlycosyltransferasefamily1proteinOS=NialliacirculansOX=1397GN=CEQ21_13270PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	503.7648010253906	2	504.764697	1007.51484	-0.80944	-0.00040858	-3.8511	-0.0019439	-4.6605	-0.0023525	504.7625140156174	94.094	0.52338	91.613	91.373	91.897	-2.4815					21	10	3	0	0	0	0.028476	1	8247	8247		42.474	20.515	1	139560	+		64601	29820	53265	53315	71094	71094					0.011385174979068324
YIRTLGDKV	9	Unmodified	_YIRTLGDKV_					0	0	0		tr|A0A553SJD1|A0A553SJD1_NIACIAcetylxylanesteraseOS=NialliacirculansOX=1397GN=CEQ21_16345PE=4SV=1	tr|A0A553SJD1|A0A553SJD1_NIACIAcetylxylanesteraseOS=NialliacirculansOX=1397GN=CEQ21_16345PE=4SV=1	tr|A0A553SJD1|A0A553SJD1_NIACIAcetylxylanesteraseOS=NialliacirculansOX=1397GN=CEQ21_16345PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	532.8082885742188	2	532.808574	1063.60259	-0.3837	-0.00020444	-0.36608	-0.00019505	-0.74977	-0.00039948	532.8083640293886	77.17	3.7419	74.798	74.138	77.88	-2.3715					207	73	5	0	0	0	0.14998	1	4076	4076		84.916	2.675	1	3803100			64602	33491	53266	53316	71095	71095					0.07333718368658992
YIRTVLGQ	8	Unmodified	_YIRTVLGQ_					0	0	0		ENSG00000057294|ENST00000340811|PKP2;nc|ENSG00000057294|Q99959|PKP2	ENSG00000057294|ENST00000340811|PKP2	ENSG00000057294|ENST00000340811|PKP2	MSMS	OvCa99_classI_Rep5	1	475.2784118652344	2	475.276909	948.539266	NaN	NaN	NaN	NaN	NaN	NaN	NaN	20.813	1	20.813	20.313	21.313	0								0	0	0	0.30129	1	57	57		20.482	0	1				64603	1235	53267	53317	71096	71096					0.06293777651433174
YISAKPLEM	9	Unmodified	_YISAKPLEM_					0	0	0		ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	ENSG00000084090|ENST00000337288|STARD7	MULTI-MSMS	OvCa99_classI_Rep5	1	526.280517578125	2	526.27826	1050.54197	0.82632	0.00043488	1.7976	0.00094604	2.6239	0.0013809	526.2787584105808	83.269	0.55102	83.269	83.078	83.629	0					31	12	4	0	0	0	0.16264	1	8659	8659		82.75	13.658	1	1599300			64604	1709	53268	53318	71097	71097					0.018718649940637988
YISEHEHF	8	Unmodified	_YISEHEHF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	OvCa99_classI_Rep5	1	531.23974609375	2	531.237981	1060.46141	-0.84413	-0.00044843	0.40762	0.00021654	-0.43651	-0.00023189	531.238105402616	49.848	0.95879	49.848	49.55	50.509	0					50	21	4	0	0	0	0.2589	1	3744	3744		114.59	35.135	1	2999000			64605	2399	53269	53319	71098	71098					-0.0664028000462622
YISEHEHF	8	Unmodified	_YISEHEHF_					0	0	0		nc|ENSG00000104853|O96005-3|CLPTM1;nc|ENSG00000104853|O96005-4|CLPTM1;ENSG00000104853|ENST00000337392|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	nc|ENSG00000104853|O96005-3|CLPTM1	MULTI-MSMS	OvCa99_classI_Rep5	1	531.2396850585938	2	531.237981	1060.46141	0.18078	9.6038E-05	-0.25591	-0.00013595	-0.075126	-3.991E-05	531.2378539992466	62.838	2.4534	62.838	62.581	65.034	0					164	60	5	0	0	0	0.054056	4	5633	5605;5633;5663;5694		160.17	57.345	1	34882000			64606	2399	53269	53319	71099;71100;71101;71102	71100					-0.0664028000462622
YISKPENL	8	Unmodified	_YISKPENL_					0	0	0		ENSG00000102547|ENST00000409308|CAB39L;ENST00000493540.1_1_2:231678823-231682621:+|nuORF;ENSG00000135932|ENST00000258418|CAB39	ENSG00000102547|ENST00000409308|CAB39L;ENSG00000135932|ENST00000258418|CAB39	ENSG00000102547|ENST00000409308|CAB39L	MULTI-MSMS	OvCa99_classI_Rep5	1	482.2624206542969	2	482.260925	962.507297	-0.0027497	-1.3261E-06	-0.083663	-4.0347E-05	-0.086412	-4.1673E-05	482.2607333789261	60.746	0.97981	60.746	60.352	61.332	0					52	22	4	0	0	0	0.42649	1	5306	5306		84.916	2.6105	1	2008000			64607	2243;4435	53270	53320	71103	71103					0.02454365177618456
YISLISSERPV	11	Unmodified	_YISLISSERPV_					0	0	0		ENST00000462848.5_1_2:219894910-219906234:-|nuORF;nc|ENSG00000181378|Q6ZU64-5|CFAP65	ENST00000462848.5_1_2:219894910-219906234:-|nuORF;nc|ENSG00000181378|Q6ZU64-5|CFAP65	nc|ENSG00000181378|Q6ZU64-5|CFAP65	MULTI-MSMS	OvCa99_classI_Rep5	1	632.3576049804688	2	632.350803	1262.68705	2.2676	0.0014339	4.1586	0.0026297	6.4263	0.0040637	632.3528720567637	118.35	0.56221	118.35	118.11	118.67	0					16	11	2	0	0	0	0.60323	1	13562	13562		44.377	5.1244	1	114540			64608	15207;12213	53271	53321	71104	71104					0.06621624394733772
YISMRKLK	8	Unmodified	_YISMRKLK_					0	0	0		ENSG00000160877.6,NACC1,chr19,+,I2.1,13118132,13118263|247|7.59|2|intron	ENSG00000160877.6,NACC1,chr19,+,I2.1,13118132,13118263|247|7.59|2|intron	ENSG00000160877.6,NACC1,chr19,+,I2.1,13118132,13118263|247|7.59|2|intron	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.776123046875	2	519.810062	1037.60557	-0.55205	-0.00028696	-1.121	-0.00058271	-1.6731	-0.00086967	520.3110486426315	62.124	0.99607	62.124	61.585	62.581	0					61	23	4	0	0	0	0.028476	1	5438	5438		45.952	27.628	1	814150			64609	6100	53272	53322	71105	71105					0.08827270221809158
YISNLPWLL	9	Unmodified	_YISNLPWLL_					0	0	0			REV__tr|A0A553SJV9|A0A553SJV9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_17420PE=4SV=1	REV__tr|A0A553SJV9|A0A553SJV9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_17420PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	559.8170776367188	2	559.815867	1117.61718	2.0742	0.0011611	-0.45737	-0.00025604	1.6168	0.0009051	559.8156915922438	133.1	8.2265	133.1	132.6	140.83	0					464	175	6	0	0	0	0.40667	1	15821	15821		51.335	5.3632	1	47573000	+		64610	30048	53273	53323	71106	71106					0.06307790516802925
YISNYTRM	8	Unmodified	_YISNYTRM_					0	0	0		tr|A0A7D7A468|A0A7D7A468_9CLOT4Fe-4SbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01890PE=4SV=1	tr|A0A7D7A468|A0A7D7A468_9CLOT4Fe-4SbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01890PE=4SV=1	tr|A0A7D7A468|A0A7D7A468_9CLOT4Fe-4SbindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01890PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	524.7662353515625	2	524.250034	1046.48552	0.23998	0.00012581	2.2439	0.0011764	2.4839	0.0013022	524.2509825092203	129.62	0.49461	128.51	128.29	128.78	-1.1121					13	9	2	0	0	0	0.028476	1	10256	10256		23.042	0	1	6255.8			64611	36137	53274	53324	71107	71107					-0.03586762842610369
YITAYERGNK	10	Unmodified	_YITAYERGNK_					0	0	0		tr|A0A553SQ68|A0A553SQ68_NIACIHDfamilyphosphohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_19020PE=4SV=1	tr|A0A553SQ68|A0A553SQ68_NIACIHDfamilyphosphohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_19020PE=4SV=1	tr|A0A553SQ68|A0A553SQ68_NIACIHDfamilyphosphohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_19020PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	607.8136596679688	2	607.811845	1213.60914	2.1188	0.0012878	-2.0872	-0.0012686	0.031571	1.9189E-05	607.811561305454	122.39	0.731	122.39	122.13	122.86	0					40	14	4	0	0	0	0.50999	1	14115	14115		52.937	3.4007	1	914050			64612	34124	53275	53325	71108	71108					0.01087611529374044
YITERIIAV	9	Unmodified	_YITERIIAV_					0	0	0		ENSG00000136205|ENST00000311160|TNS3;nc|ENSG00000136205|Q68CZ2-2|TNS3;nc|ENSG00000136205|Q68CZ2-3|TNS3;nc|ENSG00000136205|Q68CZ2-4|TNS3;TNS3-PKD1L1|1|fusion	ENSG00000136205|ENST00000311160|TNS3;TNS3-PKD1L1|1|fusion	ENSG00000136205|ENST00000311160|TNS3	MULTI-MSMS	OvCa9_classI_Rep2	2	539.3184814453125	2	539.318774	1076.623	-1.4497	-0.00078182	0.84769	0.00045718	-0.60196	-0.00032465	539.319203749162	99.493	1.6872	98.662	98.368	100.06	-0.83051					67	33	4	0	0	0	0.48047	2	9072	9072;9078		44.377	3.599	1	253360			64613	4471;32973	53276	53326	71109;71110	71109					0.08774889028472899
YITERIIAV	9	Unmodified	_YITERIIAV_					0	0	0		ENSG00000136205|ENST00000311160|TNS3;nc|ENSG00000136205|Q68CZ2-2|TNS3;nc|ENSG00000136205|Q68CZ2-3|TNS3;nc|ENSG00000136205|Q68CZ2-4|TNS3;TNS3-PKD1L1|1|fusion	ENSG00000136205|ENST00000311160|TNS3;TNS3-PKD1L1|1|fusion	ENSG00000136205|ENST00000311160|TNS3	MULTI-MSMS	OvCa9_classI_Rep3	3	539.3203125	2	539.318774	1076.623	0.11184	6.0317E-05	-1.6901	-0.0009115	-1.5783	-0.00085119	539.3177440463538	100.37	1.4009	98.764	98.518	99.919	-1.6053					53	27	3	0	0	0	0.2422	2	6810	6805;6810		69.628	21.668	1	352700			64614	4471;32973	53276	53326	71111;71112	71112					0.08774889028472899
YITERIIAV	9	Unmodified	_YITERIIAV_					0	0	0		ENSG00000136205|ENST00000311160|TNS3;nc|ENSG00000136205|Q68CZ2-2|TNS3;nc|ENSG00000136205|Q68CZ2-3|TNS3;nc|ENSG00000136205|Q68CZ2-4|TNS3;TNS3-PKD1L1|1|fusion	ENSG00000136205|ENST00000311160|TNS3;TNS3-PKD1L1|1|fusion	ENSG00000136205|ENST00000311160|TNS3	MULTI-MSMS	OvCa9_classI_Rep4_	4	539.3206787109375	2	539.318774	1076.623	-1.5772	-0.00085064	0.089407	4.8219E-05	-1.4878	-0.00080242	539.3186677250796	100.92	1.7363	98.655	98.187	99.923	-2.2665					59	34	4	0	0	0	0.21231	2	9044	9034;9044		74.255	20.904	1	291860			64615	4471;32973	53276	53326	71113;71114	71114					0.08774889028472899
YITERIIAV	9	Unmodified	_YITERIIAV_					0	0	0		ENSG00000136205|ENST00000311160|TNS3;nc|ENSG00000136205|Q68CZ2-2|TNS3;nc|ENSG00000136205|Q68CZ2-3|TNS3;nc|ENSG00000136205|Q68CZ2-4|TNS3;TNS3-PKD1L1|1|fusion	ENSG00000136205|ENST00000311160|TNS3;TNS3-PKD1L1|1|fusion	ENSG00000136205|ENST00000311160|TNS3	MULTI-MATCH	OvCa99_classI_Rep5	1		2	539.318774	1076.623	1.9653	0.0010599	0.95786	0.00051659	2.9232	0.0015765	539.3191357388366	98.703	1.0705	98.703	98.206	99.276	0	0.0072445	0.00044415	NaN	74.255	53	25	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2179300			64616	4471;32973	53276	53326							0.08774889028472899
YITERILSI	9	Unmodified	_YITERILSI_					0	0	0			REV__nc|ENSG00000185973|Q9NVH6-4|TMLHE	REV__nc|ENSG00000185973|Q9NVH6-4|TMLHE	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.2955322265625	2	554.324057	1106.63356	0.83524	0.00046299	-4.0938	-0.0022693	-3.2586	-0.0018063	554.3216608040068	132.21	0.37309	132.21	132.04	132.41	0					13	7	3	0	0	0	0.027441	1	15387	15387		68.787	15.435	1	49105	+		64617	22549	53277	53327	71115	71115					0.08450871682907746
YITERILSI	9	Unmodified	_YITERILSI_					0	0	0			REV__nc|ENSG00000185973|Q9NVH6-4|TMLHE	REV__nc|ENSG00000185973|Q9NVH6-4|TMLHE	MULTI-MATCH	OvCa9_classI_Rep2	2		2	554.324057	1106.63356	1.1074	0.00061385	1.057	0.00058594	2.1644	0.0011998	554.8271987347654	132.58	0.14804	132.35	132.23	132.38	-0.22696	0.072743	0.0036594	NaN	68.787	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	3200.5	+		64618	22549	53277	53327							0.08450871682907746
YITHEITVL	9	Unmodified	_YITHEITVL_					0	0	0		nc|ENSG00000156970|O60566-2|BUB1B;ENSG00000156970|ENST00000287598|BUB1B;nc|ENSG00000156970|O60566-3|BUB1B	nc|ENSG00000156970|O60566-2|BUB1B	nc|ENSG00000156970|O60566-2|BUB1B	MULTI-MSMS	OvCa99_classI_Rep5	1	544.797119140625	2	544.802957	1087.59136	1.4645	0.00079787	-3.0784	-0.0016771	-1.6139	-0.00087923	544.8012409842156	83.014	0.89775	83.014	82.522	83.419	0					38	20	3	0	0	0	0.34496	1	8621	8621		57.811	0	1	2696200			64619	5866	53278	53328	71116	71116					0.05106896274492101
YITNIIETALN	11	Unmodified	_YITNIIETALN_					0	0	0		tr|A0A553SGC8|A0A553SGC8_NIACIPseudouridine-5'-phosphateglycosidaseOS=NialliacirculansOX=1397GN=psuGPE=3SV=1	tr|A0A553SGC8|A0A553SGC8_NIACIPseudouridine-5'-phosphateglycosidaseOS=NialliacirculansOX=1397GN=psuGPE=3SV=1	tr|A0A553SGC8|A0A553SGC8_NIACIPseudouridine-5'-phosphateglycosidaseOS=NialliacirculansOX=1397GN=psuGPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	632.375732421875	2	632.84281	1263.67107	-0.7491	-0.00047406	4.4221	0.0027985	3.6731	0.0023245	632.8456476872734	85.336	0.69753	83.116	82.888	83.586	-2.2204					29	13	3	0	0	0	0.025487	1	5029	5029		46.457	0	1	35471			64620	33144	53279	53329	71117	71117					0.04977918157874228
YIVDEKDPI	9	Unmodified	_YIVDEKDPI_					0	0	0		tr|A0A7D6ZHM8|A0A7D6ZHM8_9CLOTUPF0182proteinHZF06_00075OS=ClostridiumintestinaleOX=36845GN=HZF06_00075PE=3SV=1	tr|A0A7D6ZHM8|A0A7D6ZHM8_9CLOTUPF0182proteinHZF06_00075OS=ClostridiumintestinaleOX=36845GN=HZF06_00075PE=3SV=1	tr|A0A7D6ZHM8|A0A7D6ZHM8_9CLOTUPF0182proteinHZF06_00075OS=ClostridiumintestinaleOX=36845GN=HZF06_00075PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	546.2869262695312	2	546.284597	1090.55464	1.8541	0.0010129	0.37707	0.00020599	2.2312	0.0012189	546.2845551627702	134.18	0.70508	134.18	133.77	134.47	0					35	14	4	0	0	0	0.53957	1	15600	15600		38.806	0	1	467800			64621	35582	53280	53330	71118	71118					0.012985996579345738
YIVDLLTHL	9	Unmodified	_YIVDLLTHL_					0	0	0		nc|ENSG00000141098|Q3B7J2-2|GFOD2;ENST00000602522.1_1_16:67709060-67709966:-|nuORF;ENSG00000141098|ENST00000268797|GFOD2	nc|ENSG00000141098|Q3B7J2-2|GFOD2	nc|ENSG00000141098|Q3B7J2-2|GFOD2	MULTI-MSMS	OvCa99_classI_Rep5	1	543.8164672851562	2	543.813325	1085.6121	1.0349	0.00056277	1.2009	0.00065308	2.2358	0.0012159	543.8138166102398	142.86	0.77985	142.86	142.54	143.32	0					40	15	4	0	0	0	0.38529	1	16689	16689		53.351	10.955	1	181880			64622	4894	53281	53331	71119	71119					0.07271486654190085
YIVHLFLSL	9	Unmodified	_YIVHLFLSL_					0	0	0			REV__Tigger4_dup106|chr1:206074674-206075604:+|2.263376500711114|0.099917421413694|4.5|421.0|48|3|anti-sense	REV__Tigger4_dup106|chr1:206074674-206075604:+|2.263376500711114|0.099917421413694|4.5|421.0|48|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.271484375	2	552.826235	1103.63792	2.1329	0.0011791	-0.37536	-0.00020751	1.7576	0.00097162	552.8258692380718	137.44	0.61449	137.44	137.21	137.82	0					26	12	3	0	0	0	0.027462	1	16063	16063		31.955	0	1	145220	+		64623	29505	53282	53332	71120	71120					0.09024380896471484
YIVSPAKSLNF	11	Unmodified	_YIVSPAKSLNF_					0	0	0		tr|A0A7D6VTA9|A0A7D6VTA9_9CLOTUPF0246proteinHZF06_16505OS=ClostridiumintestinaleOX=36845GN=yaaAPE=3SV=1	tr|A0A7D6VTA9|A0A7D6VTA9_9CLOTUPF0246proteinHZF06_16505OS=ClostridiumintestinaleOX=36845GN=yaaAPE=3SV=1	tr|A0A7D6VTA9|A0A7D6VTA9_9CLOTUPF0246proteinHZF06_16505OS=ClostridiumintestinaleOX=36845GN=yaaAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	619.8419799804688	2	619.842613	1237.67067	0.55425	0.00034355	-3.0877	-0.0019139	-2.5334	-0.0015703	619.8406269100077	152.43	1.9041	152.43	151.97	153.88	0					79	42	2	0	0	0	0.69424	1	17911	17911		31.634	3.5528	1	1109600			64624	35101	53283	53333	71121	71121					0.061345432286543655
YIVVPRVPL	9	Unmodified	_YIVVPRVPL_					0	0	0		ENSG00000154783|ENST00000285046|FGD5;FGD5|p.T545Ifs*32|1|0.24|ENSG00000154783|chr3:14820705-14820705|C/-|frameshift_variant;FGD5|p.G443Efs*20|1|0.21|ENSG00000154783|chr3:14820398-14820398|G/-|frameshift_variant	ENSG00000154783|ENST00000285046|FGD5	ENSG00000154783|ENST00000285046|FGD5	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.823486328125	2	528.334227	1054.6539	1.6233	0.00085762	-0.75555	-0.00039918	0.86771	0.00045844	528.3337071683411	117.11	0.60008	117.11	116.86	117.46	0					17	12	2	0	0	0	0.027462	1	13413	13413		33.516	12.569	1	151390			64625	5755	53284	53334	71122	71122					0.12876087133372494
YIVVVASFVT	10	Unmodified	_YIVVVASFVT_					0	0	0		tr|A0A7D7A4M7|A0A7D7A4M7_9CLOTIon-translocatingoxidoreductasecomplexsubunitEOS=ClostridiumintestinaleOX=36845GN=rnfEPE=3SV=1	tr|A0A7D7A4M7|A0A7D7A4M7_9CLOTIon-translocatingoxidoreductasecomplexsubunitEOS=ClostridiumintestinaleOX=36845GN=rnfEPE=3SV=1	tr|A0A7D7A4M7|A0A7D7A4M7_9CLOTIon-translocatingoxidoreductasecomplexsubunitEOS=ClostridiumintestinaleOX=36845GN=rnfEPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.298828125	2	549.3157	1096.61685	0.30351	0.00016672	1.8872	0.0010367	2.1907	0.0012034	549.3164584523919	114.28	1.2869	114.28	113.92	115.21	0					60	27	5	0	0	0	0.026982	1	13029	13029		30.504	14.862	1	896980			64626	36148	53285	53335	71123	71123					0.07240370796944262
YIYELNVK	8	Unmodified	_YIYELNVK_					0	0	0			REV__tr|A0A7D6VXK7|A0A7D6VXK7_9CLOTDNArepairATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11665PE=4SV=1	REV__tr|A0A7D6VXK7|A0A7D6VXK7_9CLOTDNArepairATPaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11665PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.8767700195312	2	521.2844	1040.55425	2.5901	0.0013502	-3.7763	-0.0019685	-1.1862	-0.00061835	521.2816921185365	97.399	0.29765	97.399	97.225	97.522	0					10	6	2	0	0	0	0.028476	1	10706	10706		20.482	0	1	95478	+		64627	31781	53286	53336	71124	71124					0.035592247287468126
YIYHAKSV	8	Unmodified	_YIYHAKSV_					0	0	0		tr|A0A553SNF2|A0A553SNF2_NIACIBaseplateproteinJ-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24370PE=4SV=1	tr|A0A553SNF2|A0A553SNF2_NIACIBaseplateproteinJ-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24370PE=4SV=1	tr|A0A553SNF2|A0A553SNF2_NIACIBaseplateproteinJ-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24370PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	490.7631530761719	2	490.763635	979.512717	-0.5182	-0.00025431	-4.0613	-0.0019931	-4.5795	-0.0022475	490.7615422718755	58.873	0.8756	58.873	58.28	59.156	0					41	21	4	0	0	0	0.50674	1	5026	5026		76.847	0.67695	1	5136500			64628	33922	53287	53337	71125	71125					0.022140887600926362
YIYHAKSV	8	Unmodified	_YIYHAKSV_					0	0	0		tr|A0A553SNF2|A0A553SNF2_NIACIBaseplateproteinJ-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24370PE=4SV=1	tr|A0A553SNF2|A0A553SNF2_NIACIBaseplateproteinJ-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24370PE=4SV=1	tr|A0A553SNF2|A0A553SNF2_NIACIBaseplateproteinJ-likedomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_24370PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	490.763635	979.512717	-0.77387	-0.00037979	-3.0269	-0.0014855	-3.8008	-0.0018653	490.7616308991784	61.504	1.081	58.744	58.254	59.335	-2.7593	-0.064138	0.00090336	NaN	76.847	29	20	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53145			64629	33922	53287	53337							0.022140887600926362
YIYQGHLTL	9	Unmodified	_YIYQGHLTL_					0	0	0			REV__LRP2|p.Y2601H|1|0.21|ENSG00000081479|chr2:169204186-169204186|A/G|missense_variant	REV__LRP2|p.Y2601H|1|0.21|ENSG00000081479|chr2:169204186-169204186|A/G|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	554.2955322265625	2	554.295299	1106.57605	0.9585	0.00053129	-1.0112	-0.00056048	-0.05266	-2.9189E-05	554.294499230509	132.42	0.71063	132.42	132.13	132.84	0					31	14	3	0	0	0	0.34496	1	15387	15387		57.811	6.4758	1	242410	+		64630	28627	53288	53338	71126	71126					0.027020294773365094
YIYRLLTV	8	Unmodified	_YIYRLLTV_					0	0	0		ENSG00000103194|ENST00000219473|USP10;nc|ENSG00000103194|Q14694-3|USP10;nc|ENSG00000103194|Q14694-2|USP10;FGFR2-USP10|1|fusion	ENSG00000103194|ENST00000219473|USP10;FGFR2-USP10|1|fusion	ENSG00000103194|ENST00000219473|USP10	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.767578125	2	520.810585	1039.60662	2.0684	0.0010773	-1.0152	-0.00052872	1.0532	0.00054854	521.3116290291861	75.37	0.19828	75.37	75.209	75.407	0					5	4	2	0	0	0	0.028476	1	7477	7477		57.811	0	1	55833			64631	2292;14330	53289	53339	71127	71127					0.08839807862364069
YIYSYSLRL	9	Unmodified	_YIYSYSLRL_					0	0	0			REV__tr|A0A7D6ZRG3|A0A7D6ZRG3_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03695PE=4SV=1	REV__tr|A0A7D6ZRG3|A0A7D6ZRG3_9CLOTAraCfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03695PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	589.322998046875	2	589.316232	1176.61791	1.8814	0.0011087	2.5659	0.0015121	4.4473	0.0026209	589.3178770977415	128.86	4.0908	128.86	128.47	132.56	0					266	86	6	0	0	0	0.48324	1	15157	15157		44.117	1.2525	1	48468000	+		64632	32159	53290	53340	71128	71128					0.03666585165842662
YIYVEAIYV	9	Unmodified	_YIYVEAIYV_					0	0	0			REV__tr|A0A7D6ZZ20|A0A7D6ZZ20_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18605PE=4SV=1	REV__tr|A0A7D6ZZ20|A0A7D6ZZ20_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18605PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	566.7984619140625	2	566.799883	1131.58521	0.2417	0.000137	-4.13	-0.0023409	-3.8883	-0.0022039	566.7974040314294	124.63	1.4318	124.4	123.98	125.41	-0.23193					67	28	4	0	0	0	0.58665	1	12157	12157		33.516	0.022601	1	176250	+		64633	32396	53291	53341	71129	71129					0.02468378042999575
YIYWIMQLLIS	11	Unmodified	_YIYWIMQLLIS_					0	0	0			REV__tr|A0A553SNA9|A0A553SNA9_NIACIM56familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_24005PE=4SV=1	REV__tr|A0A553SNA9|A0A553SNA9_NIACIM56familypeptidaseOS=NialliacirculansOX=1397GN=CEQ21_24005PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.2746276855469	3	481.596592	1441.76795	-0.20323	-9.7874E-05	-3.0746	-0.0014807	-3.2778	-0.0015786	481.5951097587522	33.436	0.34691	33.436	33.236	33.583	0					11	6	2	0	0	0	0.026033	1	1543	1543		22.562	0	1	46710	+		64634	30403	53292	53342	71130	71130					0.06473189113285116
YKCPALRESC	10	Unmodified	_YKCPALRESC_					0	0	0		ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	ENSG00000114554|ENST00000393409|PLXNA1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	585.70751953125	2	585.275726	1168.5369	-1.553	-0.00090891	-2.2657	-0.0013261	-3.8187	-0.002235	585.2749114758418	54.752	0.66784	51.505	51.285	51.953	-3.2474					19	12	2	0	0	0	0.026826	1	3439	3439		36.447	9.7538	1	33789			64635	3028	53293	53343	71131	71131					-0.04062762140210907
YKDGHLPISE	10	Unmodified	_YKDGHLPISE_					0	0	0		ENSG00000167880|ENST00000301607|EVPL	ENSG00000167880|ENST00000301607|EVPL	ENSG00000167880|ENST00000301607|EVPL	MULTI-MSMS	OvCa9_classI_Rep2	2	579.7927856445312	2	579.793121	1157.57169	-2.51	-0.0014553	2.1866	0.0012678	-0.32346	-0.00018754	579.7942897257548	144.91	1.0446	144.69	144.39	145.43	-0.22696					50	20	4	0	0	0	0.72319	1	14610	14610		27.882	1.1893	1	108970			64636	6845	53294	53344	71132	71132					-0.0007947973624595761
YKDIIREHKRK	11	Unmodified	_YKDIIREHKRK_					0	0	0			REV__NOC3L|p.L294Ffs*8|1|0.05|ENSG00000173145|chr10:94352380-94352381|-/CATATCTACA|frameshift_variant	REV__NOC3L|p.L294Ffs*8|1|0.05|ENSG00000173145|chr10:94352380-94352381|-/CATATCTACA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	495.9587097167969	3	495.959803	1484.85758	-4.8163	-0.0023887	2.504	0.0012419	-2.3123	-0.0011468	495.96094978154576	162.14	1.4092	161.91	160.94	162.35	-0.22696					77	27	3	0	0	0	0.72548	1	16481	16481		9.2118	2.8909	1	83644	+		64637	21750	53295	53345	71133	71133					0.1345457983684355
YKDKLGLLH	9	Unmodified	_YKDKLGLLH_					0	0	0			REV__tr|A0A553SHN7|A0A553SHN7_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=walKPE=4SV=1	REV__tr|A0A553SHN7|A0A553SHN7_NIACIhistidinekinaseOS=NialliacirculansOX=1397GN=walKPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	544.324462890625	2	543.818941	1085.62333	2.4931	0.0013558	2.6425	0.0014371	5.1356	0.0027928	543.8199300423503	75.489	1.9585	75.489	75.168	77.126	0					116	48	4	0	0	0	0.33652	1	7536	7536		58.782	2.0609	1	14707000	+		64638	29821	53296	53346	71134	71134					0.08394308748324875
YKEEDFERLLR	11	Unmodified	_YKEEDFERLLR_					0	0	0		ENSG00000159337|ENST00000290472|PLA2G4D	ENSG00000159337|ENST00000290472|PLA2G4D	ENSG00000159337|ENST00000290472|PLA2G4D	MULTI-SECPEP	OvCa9_classI_Rep2	2	500.8108825683594	3	499.928057	1496.76234	-0.97554	-0.0004877	0.37297	0.00018646	-0.60257	-0.00030124	500.2620946565174	47.929	0.54409	45.219	44.885	45.43	-2.7097					13	10	2	0	0	0	0.026364	1	2940	2940		5.6988	0	1	13202			64639	6004	53297	53347	71135	71135					0.03383181855178918
YKELVEFLI	9	Unmodified	_YKELVEFLI_					0	0	0		tr|A0A7D6VTD7|A0A7D6VTD7_9CLOTAntibioticbiosynthesismonooxygenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20470PE=4SV=1	tr|A0A7D6VTD7|A0A7D6VTD7_9CLOTAntibioticbiosynthesismonooxygenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20470PE=4SV=1	tr|A0A7D6VTD7|A0A7D6VTD7_9CLOTAntibioticbiosynthesismonooxygenaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20470PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	577.3382568359375	2	577.328808	1152.64306	1.599	0.00092313	-0.16754	-9.6728E-05	1.4314	0.0008264	577.3284707570448	136.18	1.7014	136.18	135.31	137.01	0					61	35	3	0	0	0	0.37135	1	15819	15819		54.776	5.5655	1	69662			64640	35107	53298	53348	71136	71136					0.07284639968429474
YKEPIDRYK	9	Unmodified	_YKEPIDRYK_					0	0	0			REV__tr|A0A553SJN0|A0A553SJN0_NIACIGlycogensynthaseOS=NialliacirculansOX=1397GN=glgAPE=3SV=1	REV__tr|A0A553SJN0|A0A553SJN0_NIACIGlycogensynthaseOS=NialliacirculansOX=1397GN=glgAPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	404.55126953125	3	404.552151	1210.63462	0.7705	0.00031171	-3.0012	-0.0012142	-2.2307	-0.00090245	404.55096706939077	42.5	0.42247	42.5	42.242	42.665	0					22	9	3	0	0	0	0.21284	1	2728	2728		74.165	2.0694	1	2068000	+		64641	30021	53299	53349	71137	71137					0.03773086051796781
YKEQDELELNW	11	Unmodified	_YKEQDELELNW_					0	0	0			REV__ENSG00000198088|ENST00000372466|NUP62CL	REV__ENSG00000198088|ENST00000372466|NUP62CL	MSMS	OvCa9_classI_Rep3	3	489.5614929199219	3	489.564785	1465.67252	NaN	NaN	NaN	NaN	NaN	NaN	NaN	56.897	1	53.747	53.247	54.247	-3.1504								0	0	0	0.19474	1	1648	1648		18.531	2.6104	1		+		64642	22985	53300	53350	71138	71138					-0.04168492544022229
YKFFFFLKRYF	11	Unmodified	_YKFFFFLKRYF_					0	0	0			REV__ENST00000535340.5_1_11:18591643-18610207:-|nuORF	REV__ENST00000535340.5_1_11:18591643-18610207:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.7426147460938	3	535.958741	1604.85439	0.02119	1.1357E-05	-2.3448	-0.0012567	-2.3236	-0.0012454	536.2912195398786	65.159	0.43434	65.159	64.875	65.309	0					12	10	2	0	0	0	0.026534	1	5934	5934		3.2113	0	1	237530	+		64643	27285	53301	53351	71139	71139					0.07615936730144313
YKFLQFAYFKA	11	Unmodified	_YKFLQFAYFKA_					0	0	0		ENSG00000170275|ENST00000320954|CRTAP	ENSG00000170275|ENST00000320954|CRTAP	ENSG00000170275|ENST00000320954|CRTAP	MULTI-MSMS	OvCa9_classI_Rep4_	4	475.92364501953125	3	475.923696	1424.74926	0.22423	0.00010671	-0.18465	-8.7878E-05	0.03958	1.8837E-05	475.9235414221273	20.474	1.4677	19.136	18.803	20.27	-1.3386					73	29	5	0	0	0	0.72472	1	50	50		19.263	2.0959	1	385230			64644	7089	53302	53352	71140	71140					0.053873955337394364
YKGTAIANFL	10	Unmodified	_YKGTAIANFL_					0	0	0			REV__ENSG00000121691|ENST00000241052|CAT	REV__ENSG00000121691|ENST00000241052|CAT	MULTI-MSMS	OvCa9_classI_Rep2	2	549.30224609375	2	549.303124	1096.5917	1.1758	0.00064588	-1.1707	-0.00064304	0.0051672	2.8384E-06	549.3023942887744	130.34	1.3411	130.11	129.86	131.2	-0.22696					43	26	3	0	0	0	0.58067	1	12829	12829		44.377	6.5657	1	69053	+		64645	18551	53303	53353	71141	71141					0.04726315994344077
YKIGEISEI	9	Unmodified	_YKIGEISEI_					0	0	0			REV__tr|A0A7D6VTA9|A0A7D6VTA9_9CLOTUPF0246proteinHZF06_16505OS=ClostridiumintestinaleOX=36845GN=yaaAPE=3SV=1	REV__tr|A0A7D6VTA9|A0A7D6VTA9_9CLOTUPF0246proteinHZF06_16505OS=ClostridiumintestinaleOX=36845GN=yaaAPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	526.2860717773438	2	526.28714	1050.55973	-1.0148	-0.00053409	0.64464	0.00033927	-0.37017	-0.00019482	526.2873096136325	104.41	1.7347	102.29	101.96	103.69	-2.1192					86	33	4	0	0	0	0.33652	1	9492	9492		58.782	7.4465	1	563340	+		64646	31587	53304	53354	71142	71142					0.03646903520575506
YKIHLLII	8	Unmodified	_YKIHLLII_					0	0	0		ENST00000435641.5_1_6:6362566-6366679:-|nuORF	ENST00000435641.5_1_6:6362566-6366679:-|nuORF	ENST00000435641.5_1_6:6362566-6366679:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	506.81005859375	2	506.83132	1011.64809	1.3925	0.00070575	1.8607	0.00094305	3.2532	0.0016488	506.83238602730876	88.575	0.29309	87.207	87.086	87.379	-1.3676					6	5	2	0	0	0	0.028476	1	7767	7767		54.765	29.315	1	38198			64647	11866	53305	53355	71143	71143					0.14272988621712557
YKIIITKNN	9	Unmodified	_YKIIITKNN_					0	0	0			REV__ENSG00000231738|ENST00000532498|TSPAN19	REV__ENSG00000231738|ENST00000532498|TSPAN19	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8306274414062	2	553.832049	1105.64954	0.13277	7.3535E-05	-3.4573	-0.0019148	-3.3245	-0.0018412	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.56889	2	13931	13871;13931		35.618	6.1071	1	400120	+		64648	23387	53306	53356	71144;71145	71145					0.10094577919812764
YKIKRSRS	8	Unmodified	_YKIKRSRS_					0	0	0			REV__ENST00000350997.11_1_11:61568553-61568607:-|nuORF	REV__ENST00000350997.11_1_11:61568553-61568607:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	520.3109741210938	2	519.314358	1036.61416	-1.1127	-0.00057785	0.44085	0.00022894	-0.67187	-0.00034891	519.3151931007362	84.625	0.25078	83.079	83.001	83.252	-1.5462					6	4	2	0	0	0	0.028476	1	7289	7289		37.159	2.9866	1	9032.6	+		64649	24719	53307	53357	71146	71146					0.09731960182648436
YKKDQLAKI	9	Unmodified	_YKKDQLAKI_					0	0	0			REV__ENST00000503279.1_1_5:94864675-94872608:-|nuORF	REV__ENST00000503279.1_1_5:94864675-94872608:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8296508789062	2	553.832049	1105.64954	-0.8401	-0.00046527	-2.9207	-0.0016176	-3.7608	-0.0020828	553.8302639395932	141.83	4.8939	141.6	140.14	145.03	-0.22697					296	98	4	0	0	0	0.67509	1	14301	14301		23.042	0.46283	1	245610	+		64650	23041	53308	53358	71147	71147					0.10094577919812764
YKKKKKKNPQ	10	Unmodified	_YKKKKKKNPQ_					0	0	0		L1PA15_dup4761|chrX:56137796-56140776:+|1.2704796762244717|0.2808252408673861|2.18|428.0|71|3|sense	L1PA15_dup4761|chrX:56137796-56140776:+|1.2704796762244717|0.2808252408673861|2.18|428.0|71|3|sense	L1PA15_dup4761|chrX:56137796-56140776:+|1.2704796762244717|0.2808252408673861|2.18|428.0|71|3|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	430.6067199707031	3	430.60659	1288.79794	0.32091	0.00013819	-0.18226	-7.8481E-05	0.13865	5.9705E-05	430.60647148930826	20.95	0.51109	20.95	20.776	21.287	0					28	12	4	0	0	0	0.78463	1	70	70		20.03	4.1098	1	314810			64651	14667	53309	53359	71148	71148					0.16509308893523666
YKKRLVPD	8	Unmodified	_YKKRLVPD_					0	0	0			REV__ENSG00000128973|ENST00000249806|CLN6	REV__ENSG00000128973|ENST00000249806|CLN6	MULTI-MSMS	OvCa9_classI_Rep2	2	509.8046569824219	2	509.805834	1017.59712	0.17054	8.6941E-05	-0.6687	-0.00034091	-0.49816	-0.00025397	509.80544933708404	111.24	1.4787	111.1	110.78	112.26	-0.13961					90	29	5	0	0	0	0.64026	1	10554	10554		55.504	2.1528	1	1582600	+		64652	18880	53310	53360	71149	71149					0.08902039576832976
YKKRLVPD	8	Unmodified	_YKKRLVPD_					0	0	0			REV__ENSG00000128973|ENST00000249806|CLN6	REV__ENSG00000128973|ENST00000249806|CLN6	MULTI-MSMS	OvCa9_classI_Rep3	3	509.80401611328125	2	509.805834	1017.59712	1.7031	0.00086826	-2.332	-0.0011889	-0.62886	-0.00032059	509.8046299729127	112.22	1.4743	111.12	110.75	112.22	-1.1038					89	29	4	0	0	0	0.66704	2	8225	8225;8233		50.025	7.6284	1	1564800	+		64653	18880	53310	53360	71150;71151	71150					0.08902039576832976
YKKTLLLRH	9	Unmodified	_YKKTLLLRH_					0	0	0		ENSG00000205189|ENST00000455036|ZBTB10;nc|ENSG00000205189|Q96DT7-2|ZBTB10;nc|ENSG00000205189|Q96DT7-3|ZBTB10	ENSG00000205189|ENST00000455036|ZBTB10	ENSG00000205189|ENST00000455036|ZBTB10	MULTI-MSMS	OvCa9_classI_Rep2	2	586.3692016601562	2	586.369133	1170.72371	0.2284	0.00013393	-0.62054	-0.00036386	-0.39213	-0.00022994	586.368761284623	92.323	2.3778	91.155	90.866	93.244	-1.168					141	45	5	0	0	0	0.28934	6	8205	8200;8205;8211;8224;8243;8255		64.207	15.778	1	1452400			64654	9057	53311	53361	71152;71153;71154;71155;71156;71157	71153					0.14517965801974242
YKKTLLLRH	9	Unmodified	_YKKTLLLRH_					0	0	0		ENSG00000205189|ENST00000455036|ZBTB10;nc|ENSG00000205189|Q96DT7-2|ZBTB10;nc|ENSG00000205189|Q96DT7-3|ZBTB10	ENSG00000205189|ENST00000455036|ZBTB10	ENSG00000205189|ENST00000455036|ZBTB10	MULTI-MSMS	OvCa9_classI_Rep3	3	586.3702392578125	2	586.369133	1170.72371	-2.3837	-0.0013977	2.1429	0.0012565	-0.24083	-0.00014122	586.3702593938116	93.813	3.2699	91.852	91.476	94.746	-1.9617					176	64	5	0	0	0	0.14998	9	6035	6007;6012;6022;6029;6035;6042;6048;6054;6060		84.916	16.373	1	1678300			64655	9057	53311	53361	71158;71159;71160;71161;71162;71163;71164;71165;71166	71162					0.14517965801974242
YKKTLLLRH	9	Unmodified	_YKKTLLLRH_					0	0	0		ENSG00000205189|ENST00000455036|ZBTB10;nc|ENSG00000205189|Q96DT7-2|ZBTB10;nc|ENSG00000205189|Q96DT7-3|ZBTB10	ENSG00000205189|ENST00000455036|ZBTB10	ENSG00000205189|ENST00000455036|ZBTB10	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.3693237304688	2	586.369133	1170.72371	-0.81014	-0.00047504	0.51223	0.00030036	-0.29791	-0.00017468	586.3692629340027	94.416	2.9527	91.947	91.666	94.618	-2.4685					167	58	5	0	0	0	0.3076	3	8276	8276;8300;8326		62.107	14.192	1	1387500			64656	9057	53311	53361	71167;71168;71169	71167					0.14517965801974242
YKLKRTRIWKQ	11	Unmodified	_YKLKRTRIWKQ_					0	0	0			REV__ENST00000555351.1_1_14:97263783-97319303:+|nuORF	REV__ENST00000555351.1_1_14:97263783-97319303:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	507.3107604980469	3	507.312177	1518.9147	-7.2505	-0.0036783	3.0777	0.0015614	-4.1728	-0.0021169	507.31400483839707	163.92	1.3967	162.53	161.26	162.66	-1.3925					92	31	4	0	0	0	0.7257	1	14270	14270		6.3209	2.9122	1	78750	+		64657	17449	53312	53362	71170	71170					0.17600047113228356
YKLLKCVG	8	Unmodified	_YKLLKCVG_					0	0	0			REV__nc|ENSG00000249948|Q9H227|GBA3	REV__nc|ENSG00000249948|Q9H227|GBA3	MULTI-MSMS	OvCa9_classI_Rep4_	4	462.2743835449219	2	462.272781	922.531009	0.44474	0.00020559	3.4981	0.0016171	3.9429	0.0018227	462.2743614329176	36.608	1.4958	33.715	33.345	34.841	-2.8925					79	29	5	0	0	0	0.74971	1	1265	1265		26.796	2.5934	1	314320	+		64658	29170	53313	53363	71171	71171					0.06664507410437182
YKLNRLHR	8	Unmodified	_YKLNRLHR_					0	0	0			REV__ENSG00000125375|ENST00000557421|DMAC2L	REV__ENSG00000125375|ENST00000557421|DMAC2L	MULTI-MSMS	OvCa99_classI_Rep5	1	550.3270874023438	2	550.327799	1098.64105	-0.12182	-6.7042E-05	-0.34148	-0.00018793	-0.4633	-0.00025497	550.3275975312841	32.559	1.1801	32.559	32.353	33.533	0					59	23	4	0	0	0	0.56195	1	1423	1423		71.296	5.4925	1	1035100	+		64659	18720	53314	53364	71172	71172					0.09567068793830913
YKLPLLRSL	9	Unmodified	_YKLPLLRSL_					0	0	0			REV__ENSG00000205085|ENST00000682356|GARIN1A	REV__ENSG00000205085|ENST00000682356|GARIN1A	MULTI-MSMS	OvCa99_classI_Rep5	1	551.8535766601562	2	551.852784	1101.69102	2.1122	0.0011656	-0.1579	-8.714E-05	1.9543	0.0010785	551.8526094754586	91.669	1.9925	91.669	90.976	92.968	0					147	47	5	0	0	0	0.23241	2	9916	9886;9916		70.816	7.5099	1	12124000	+		64660	23200	53315	53365	71173;71174	71174					0.14423758679117782
YKLRVTHL	8	Unmodified	_YKLRVTHL_					0	0	0		VPS11|p.H291Tfs*36|1|0.04|ENSG00000160695|chr11:119081155-119081155|C/-|frameshift_variant;nc|ENSG00000160695|Q9H270|VPS11;ENSG00000160695|ENST00000621676|VPS11	VPS11|p.H291Tfs*36|1|0.04|ENSG00000160695|chr11:119081155-119081155|C/-|frameshift_variant	VPS11|p.H291Tfs*36|1|0.04|ENSG00000160695|chr11:119081155-119081155|C/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	515.7877197265625	2	515.313826	1028.6131	0.62317	0.00032113	-4.4003	-0.0022675	-3.7771	-0.0019464	515.3115987872127	34.729	0.45347	31.941	31.797	32.25	-2.7881					11	8	2	0	0	0	0.028476	1	1058	1058		47.916	0	1	16845			64661	6082	53316	53366	71175	71175					0.09993745813744681
YKLVTIKFK	9	Unmodified	_YKLVTIKFK_					0	0	0		ENSG00000180957|ENST00000335272|PITPNB;nc|ENSG00000180957|P48739-2|PITPNB;nc|ENSG00000180957|P48739-3|PITPNB	ENSG00000180957|ENST00000335272|PITPNB	ENSG00000180957|ENST00000335272|PITPNB	MULTI-MSMS	OvCa9_classI_Rep2	2	570.3587646484375	2	570.362985	1138.71142	-4.2157	-0.0024045	-3.0066	-0.0017149	-7.2223	-0.0041193	570.3611382746453	152.47	1.2391	152.25	151.83	153.07	-0.22697					66	25	4	0	0	0	0.71901	1	15496	15496		11.511	0	1	86072			64662	7904	53317	53367	71176	71176					0.1476092933894506
YKNGEKWTL	9	Unmodified	_YKNGEKWTL_					0	0	0		tr|A0A7D6VR54|A0A7D6VR54_9CLOTalpha,alpha-phosphotrehalaseOS=ClostridiumintestinaleOX=36845GN=treCPE=4SV=1	tr|A0A7D6VR54|A0A7D6VR54_9CLOTalpha,alpha-phosphotrehalaseOS=ClostridiumintestinaleOX=36845GN=treCPE=4SV=1	tr|A0A7D6VR54|A0A7D6VR54_9CLOTalpha,alpha-phosphotrehalaseOS=ClostridiumintestinaleOX=36845GN=treCPE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	569.7998046875	2	569.798206	1137.58186	2.0673	0.0011779	-0.12799	-7.2929E-05	1.9393	0.001105	569.7980164478925	76.584	0.84695	76.584	76.238	77.085	0					60	20	4	0	0	0	0.047062	1	7669	7669		120.62	1.8779	1	9794300			64663	34896	53318	53368	71177	71177					0.018571279890011283
YKPCPSSNFW	10	Unmodified	_YKPCPSSNFW_					0	0	0			REV__ENST00000573487.5_1_16:21191085-21191160:+|nuORF	REV__ENST00000573487.5_1_16:21191085-21191160:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	614.77978515625	2	614.776416	1227.53828	1.2969	0.00079729	3.6064	0.0022171	4.9033	0.0030144	614.7784839303192	124.67	1.1088	124.67	124.28	125.39	0					66	25	5	0	0	0	0.49558	1	14402	14402		54.776	10.399	1	2017000	+		64664	27756	53319	53369	71178	71178					-0.06638804779800012
YKPLKEHVDA	10	Unmodified	_YKPLKEHVDA_					0	0	0		nc|ENSG00000126970|Q9NQZ6-2|ZC4H2;ENST00000488608.5_1_X:64139959-64196305:-|nuORF;ENST00000492653.5_1_X:64139109-64196305:-|nuORF;nc|ENSG00000126970|Q9NQZ6-4|ZC4H2;nc|ENSG00000126970|Q9NQZ6-3|ZC4H2;nc|ENSG00000126970|Q9NQZ6-5|ZC4H2;ENSG00000126970|ENST00000374839|ZC4H2	nc|ENSG00000126970|Q9NQZ6-2|ZC4H2	nc|ENSG00000126970|Q9NQZ6-2|ZC4H2	MULTI-MSMS	OvCa9_classI_Rep3	3	600.322998046875	2	600.324588	1198.63462	-2.9074	-0.0017454	1.1557	0.00069379	-1.7518	-0.0010516	600.3251735089444	151.69	1.358	150.74	150.35	151.71	-0.95645					71	26	4	0	0	0	0.75313	1	12986	12986		24.519	1.4767	1	229880			64665	3814	53320	53370	71179	71179					0.04325086051812832
YKPVKSAFY	9	Unmodified	_YKPVKSAFY_					0	0	0		tr|A0A553SRK4|A0A553SRK4_NIACICd(2+)-exportingATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	tr|A0A553SRK4|A0A553SRK4_NIACICd(2+)-exportingATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	tr|A0A553SRK4|A0A553SRK4_NIACICd(2+)-exportingATPaseOS=NialliacirculansOX=1397GN=cadAPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.8131713867188	2	551.800217	1101.58588	-0.85302	-0.00047069	3.9321	0.0021698	3.0791	0.0016991	551.8020574290871	25.918	0.44847	25.918	25.693	26.142	0					13	8	2	0	0	0	0.027462	1	620	620		47.657	25.697	1	59683			64666	34272	53321	53371	71180	71180					0.03915217482699518
YKQAMEYKK	9	Unmodified	_YKQAMEYKK_					0	0	0		ENSG00000183559|ENST00000329446|C10orf120	ENSG00000183559|ENST00000329446|C10orf120	ENSG00000183559|ENST00000329446|C10orf120	MULTI-MSMS	OvCa9_classI_Rep2	2	594.8102416992188	2	594.807716	1187.60088	1.1499	0.00068397	2.3089	0.0013734	3.4588	0.0020573	594.8089084281804	28.738	0.64997	26.029	25.856	26.506	-2.7097					29	13	3	0	0	0	0.59259	1	629	629		32.812	1.2826	1	43860			64667	8084	53322	53372	71181	71181					0.014583412883894198
YKQEKLILLQR	11	Unmodified	_YKQEKLILLQR_					0	0	0		ENSG00000117724|ENST00000366955|CENPF;CENPF|p.E1182Vfs*21|1|0.46|ENSG00000117724|chr1:214641879-214641882|AGAG/-|frameshift_variant	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-MSMS	OvCa9_classI_Rep2	2	477.957763671875	3	477.960921	1430.86093	-5.0293	-0.0024038	1.2478	0.00059639	-3.7816	-0.0018074	477.96128633611335	158.76	1.3288	158.54	157.62	158.95	-0.22696					57	34	3	0	0	0	0.72542	1	16128	16128		10.104	0.8921	1	44261			64668	3276	53323	53373	71182	71182					0.16273829890883462
YKQEKLILLQR	11	Unmodified	_YKQEKLILLQR_					0	0	0		ENSG00000117724|ENST00000366955|CENPF;CENPF|p.E1182Vfs*21|1|0.46|ENSG00000117724|chr1:214641879-214641882|AGAG/-|frameshift_variant	ENSG00000117724|ENST00000366955|CENPF	ENSG00000117724|ENST00000366955|CENPF	MULTI-MSMS	OvCa9_classI_Rep3	3	477.95806884765625	3	477.960921	1430.86093	-6.0552	-0.0028941	2.5413	0.0012146	-3.5139	-0.0016795	477.9617916951061	159.06	2.5663	157.8	156.71	159.28	-1.267					138	56	4	0	0	0	0.7252	1	13734	13734		12.957	2.3707	1	60373			64669	3276	53323	53373	71183	71183					0.16273829890883462
YKRAIDTIK	9	Unmodified	_YKRAIDTIK_					0	0	0		tr|A0A7D7A019|A0A7D7A019_9CLOTHistidinephosphatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08340PE=4SV=1	tr|A0A7D7A019|A0A7D7A019_9CLOTHistidinephosphatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08340PE=4SV=1	tr|A0A7D7A019|A0A7D7A019_9CLOTHistidinephosphatasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08340PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.3145141601562	2	554.329673	1106.64479	0.33317	0.00018469	-0.81406	-0.00045126	-0.48089	-0.00026657	554.3294125546649	114.4	0.22552	114.4	114.2	114.42	0					8	4	3	0	0	0	0.027462	1	13058	13058		44.117	12.162	1	488430			64670	35982	53324	53374	71184	71184					0.09573693777019798
YKRAKLEKW	9	Unmodified	_YKRAKLEKW_					0	0	0		nc|ENSG00000159625|Q8IY82-2|DRC7;ENSG00000159625|ENST00000360716|DRC7	nc|ENSG00000159625|Q8IY82-2|DRC7	nc|ENSG00000159625|Q8IY82-2|DRC7	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3524780273438	2	611.358765	1220.70298	-2.725	-0.001666	-1.8334	-0.0011209	-4.5584	-0.0027868	611.3575283211214	150.83	4.6872	149.39	148.02	152.71	-1.4344					404	109	6	0	0	0	0.55588	1	15094	15094		37.159	6.8414	1	435030			64671	6021	53325	53375	71185	71185					0.10145375422325742
YKRAPKLNIY	10	Unmodified	_YKRAPKLNIY_					0	0	0			REV__ENST00000465409.1_1_10:104183185-104183703:-|nuORF	REV__ENST00000465409.1_1_10:104183185-104183703:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	633.8699340820312	2	633.371872	1264.72919	-4.5141	-0.0028591	0.26314	0.00016666	-4.251	-0.0026925	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.76627	1	15764	15764		23.042	7.4007	1	369460	+		64672	17864	53326	53376	71186	71186					0.10741644593804267
YKSSVACKV	9	Unmodified	_YKSSVACKV_					0	0	0			REV__ENST00000542123.5_1_12:12966301-12976268:+|nuORF	REV__ENST00000542123.5_1_12:12966301-12976268:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	492.7639465332031	2	492.762778	983.511002	1.6285	0.00080245	1.1392	0.00056136	2.7677	0.0013638	492.7632124295318	107.24	1.0549	107.24	106.76	107.82	0					41	24	2	0	0	0	0.28934	1	12102	12102		64.207	16.292	1	1927000	+		64673	23271	53327	53377	71187	71187					0.018587116798244097
YKTNIELKV	9	Unmodified	_YKTNIELKV_					0	0	0		nc|ENSG00000136861|Q96SN8-3|CDK5RAP2;nc|ENSG00000136861|Q96SN8-2|CDK5RAP2;ENSG00000136861|ENST00000349780|CDK5RAP2;nc|ENSG00000136861|Q96SN8-4|CDK5RAP2;CDK5RAP2|p.Y1498Gfs*4|1|0.29|ENSG00000136861|chr9:120409227-120409240|TCACGCTGGCATAC/-|frameshift_variant	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	nc|ENSG00000136861|Q96SN8-3|CDK5RAP2	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.3123168945312	2	554.324057	1106.63356	-0.4338	-0.00024046	1.0579	0.00058639	0.62406	0.00034593	554.3245156947432	68.387	0.69608	68.387	68.077	68.774	0					27	16	2	0	0	0	0.027255	1	6496	6496		82.75	0	1	1077000			64674	4524	53328	53378	71188	71188					0.08450871682885008
YKTRLKQLLHW	11	Unmodified	_YKTRLKQLLHW_					0	0	0		nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;SBNO1|p.L604*|1|0.19|ENSG00000139697|chr12:123326180-123326216|AGTTGCACAACCCTTTTAACTTTGGATGCTATGCATA/-|frameshift_variant;nc|ENSG00000139697|A3KN83-4|SBNO1;SBNO1|p.I493Sfs*4|1|0.03|ENSG00000139697|chr12:123327767-123327768|-/C|frameshift_variant	nc|ENSG00000139697|A3KN83-3|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-MSMS	OvCa9_classI_Rep3	3	495.9587707519531	3	495.961144	1484.8616	-6.9451	-0.0034445	3.2356	0.0016047	-3.7095	-0.0018398	495.9626414226145	164	0.35431	162.61	162.34	162.69	-1.3925					18	7	3	0	0	0	0.72507	1	14292	14292		14.694	5.4819	1	190820			64675	4796	53329	53379	71189	71189					0.13856669330584737
YKTRLKQLLHW	11	Unmodified	_YKTRLKQLLHW_					0	0	0		nc|ENSG00000139697|A3KN83-3|SBNO1;nc|ENSG00000139697|A3KN83-2|SBNO1;ENSG00000139697|ENST00000602398|SBNO1;SBNO1|p.L604*|1|0.19|ENSG00000139697|chr12:123326180-123326216|AGTTGCACAACCCTTTTAACTTTGGATGCTATGCATA/-|frameshift_variant;nc|ENSG00000139697|A3KN83-4|SBNO1;SBNO1|p.I493Sfs*4|1|0.03|ENSG00000139697|chr12:123327767-123327768|-/C|frameshift_variant	nc|ENSG00000139697|A3KN83-3|SBNO1	nc|ENSG00000139697|A3KN83-3|SBNO1	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		3	495.961144	1484.8616	-4.8131	-0.0023871	3.3508	0.0016619	-1.4623	-0.00072524	495.96233137932313	162.83	0.28682	162.6	162.35	162.64	-0.22696	0.030273	0.00062042	NaN	14.694	12	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88076			64676	4796	53329	53379							0.13856669330584737
YKVEYPIMY	9	Oxidation (M)	_YKVEYPIM(Oxidation (M))Y_		YKVEYPIM(1)Y		YKVEYPIM(130)Y	0	0	1		ENSG00000143198|ENST00000367889|MGST3;ENST00000488688.1_1_1:165619084-165620325:+|nuORF;ENST00000477450.1_1_1:165619084-165623023:+|nuORF	ENSG00000143198|ENST00000367889|MGST3	ENSG00000143198|ENST00000367889|MGST3	MULTI-MSMS	OvCa9_classI_Rep2	2	611.296630859375	2	611.29665	1220.57875	-0.66555	-0.00040685	0.37673	0.00023029	-0.28882	-0.00017656	611.2967120313505	95.227	3.6495	94.199	93.873	97.523	-1.0281					128	73	4	0	0	0	0.035142	3	8562	8556;8562;8569		131.03	58.32	1	704580			64677	5020	53330	53380	71190;71191;71192	71191		161			-0.022718831800375483
YKVEYPIMY	9	Oxidation (M)	_YKVEYPIM(Oxidation (M))Y_		YKVEYPIM(1)Y		YKVEYPIM(140)Y	0	0	1		ENSG00000143198|ENST00000367889|MGST3;ENST00000488688.1_1_1:165619084-165620325:+|nuORF;ENST00000477450.1_1_1:165619084-165623023:+|nuORF	ENSG00000143198|ENST00000367889|MGST3	ENSG00000143198|ENST00000367889|MGST3	MULTI-MSMS	OvCa9_classI_Rep3	3	611.2974243164062	2	611.29665	1220.57875	0.6533	0.00039936	-0.75794	-0.00046333	-0.10464	-6.3964E-05	611.2959973979289	96.124	4.2227	94.295	93.83	98.053	-1.8286					144	82	5	0	0	0	0.022645	3	6314	6299;6305;6314		143.89	58.037	1	1124600			64678	5020	53330	53380	71193;71194;71195	71195		161			-0.022718831800375483
YKVEYPIMY	9	Oxidation (M)	_YKVEYPIM(Oxidation (M))Y_		YKVEYPIM(1)Y		YKVEYPIM(150)Y	0	0	1		ENSG00000143198|ENST00000367889|MGST3;ENST00000488688.1_1_1:165619084-165620325:+|nuORF;ENST00000477450.1_1_1:165619084-165623023:+|nuORF	ENSG00000143198|ENST00000367889|MGST3	ENSG00000143198|ENST00000367889|MGST3	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.2978515625	2	611.29665	1220.57875	1.1707	0.00071562	-1.1246	-0.00068744	0.046104	2.8183E-05	611.2958127040032	96.626	1.3586	94.201	93.811	95.169	-2.4256					95	26	5	0	0	0	0.019133	3	8540	8528;8540;8555		148.04	60.289	1	1063400			64679	5020	53330	53380	71196;71197;71198	71197		161			-0.022718831800375483
YKVEYPIMY	9	Unmodified	_YKVEYPIMY_					0	0	0		ENSG00000143198|ENST00000367889|MGST3;ENST00000488688.1_1_1:165619084-165620325:+|nuORF;ENST00000477450.1_1_1:165619084-165623023:+|nuORF	ENSG00000143198|ENST00000367889|MGST3	ENSG00000143198|ENST00000367889|MGST3	MULTI-MSMS	OvCa9_classI_Rep3	3	603.2987670898438	2	603.299193	1204.58383	2.2844	0.0013782	-2.1554	-0.0013003	0.12899	7.7819E-05	603.2975686681065	105.48	1.3539	104.13	103.73	105.08	-1.3482					57	25	4	0	0	0	0.041116	1	7400	7400		125.81	70.31	1	302860			64680	5020	53330	53381	71199	71199					-0.0102757931740598
YKVEYPIMY	9	Unmodified	_YKVEYPIMY_					0	0	0		ENSG00000143198|ENST00000367889|MGST3;ENST00000488688.1_1_1:165619084-165620325:+|nuORF;ENST00000477450.1_1_1:165619084-165623023:+|nuORF	ENSG00000143198|ENST00000367889|MGST3	ENSG00000143198|ENST00000367889|MGST3	MULTI-MSMS	OvCa9_classI_Rep4_	4	603.2992553710938	2	603.299193	1204.58383	0.13281	8.0122E-05	0.11665	7.0376E-05	0.24946	0.0001505	603.298886228617	106.09	1.705	104.08	103.7	105.4	-2.0161					62	32	4	0	0	0	0.074342	2	9642	9642;9653		104.75	61.882	1	265780			64681	5020	53330	53381	71200;71201	71200					-0.0102757931740598
YKVYFDIT	8	Unmodified	_YKVYFDIT_					0	0	0			REV__tr|A0A7D6ZRY3|A0A7D6ZRY3_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13965PE=3SV=1	REV__tr|A0A7D6ZRY3|A0A7D6ZRY3_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13965PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2985229492188	2	524.771126	1047.5277	1.674	0.00087848	3.7637	0.0019751	5.4377	0.0028536	525.2745593659685	92.975	0.87756	92.975	92.385	93.263	0					43	20	4	0	0	0	0.028476	1	10013	10013		31.955	11.958	1	626960	+		64682	32171	53331	53382	71202	71202					0.005835358374270072
YKVYFDIT	8	Unmodified	_YKVYFDIT_					0	0	0			REV__tr|A0A7D6ZRY3|A0A7D6ZRY3_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13965PE=3SV=1	REV__tr|A0A7D6ZRY3|A0A7D6ZRY3_9CLOTGlycosidehydrolasefamily1proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13965PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	524.771126	1047.5277	-0.33418	-0.00017537	-1.8824	-0.00098784	-2.2166	-0.0011632	524.7706042323744	94.2	0.40353	93.101	92.958	93.361	-1.0995	0.063076	-0.0040274	NaN	31.955	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8179.6	+		64683	32171	53331	53382							0.005835358374270072
YKYLRRLFRFR	11	Unmodified	_YKYLRRLFRFR_					0	0	0		ENSG00000115446|ENST00000357765|UNC50	ENSG00000115446|ENST00000357765|UNC50	ENSG00000115446|ENST00000357765|UNC50	MULTI-MSMS	OvCa9_classI_Rep3	3	539.9868774414062	3	539.987805	1616.94158	-6.1211	-0.0033053	2.3779	0.0012841	-3.7431	-0.0020213	539.9889211011988	163.98	0.3024	162.59	162.42	162.72	-1.3925					24	6	5	0	0	0	0.72548	1	14326	14326		9.2118	0.80454	1	771380			64684	3099	53332	53383	71203	71203					0.15779155724408156
YKYLRRLFRFR	11	Unmodified	_YKYLRRLFRFR_					0	0	0		ENSG00000115446|ENST00000357765|UNC50	ENSG00000115446|ENST00000357765|UNC50	ENSG00000115446|ENST00000357765|UNC50	MULTI-MATCH	OvCa9_classI_Rep2	2		3	539.987805	1616.94158	-5.6323	-0.0030414	4.4757	0.0024168	-1.1566	-0.00062454	539.9900199292111	162.8	0.27551	162.57	162.4	162.68	-0.22696	0.0071942	0.0022468	NaN	9.2118	17	5	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	396340			64685	3099	53332	53383							0.15779155724408156
YKYLRRLFRFR	11	Unmodified	_YKYLRRLFRFR_					0	0	0		ENSG00000115446|ENST00000357765|UNC50	ENSG00000115446|ENST00000357765|UNC50	ENSG00000115446|ENST00000357765|UNC50	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		3	539.987805	1616.94158	-7.1877	-0.0038813	3.3806	0.0018255	-3.8071	-0.0020558	539.9896103629828	164.18	0.35674	162.54	162.24	162.6	-1.6387	-0.030316	0.00047263	NaN	9.2118	19	8	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	412140			64686	3099	53332	53383							0.15779155724408156
YLAALNCLRLI	11	Unmodified	_YLAALNCLRLI_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	OvCa99_classI_Rep5	1	631.8692626953125	2	631.868108	1261.72166	2.0216	0.0012774	-2.1026	-0.0013286	-0.081045	-5.121E-05	631.8665772724792	135.29	1.0767	135.29	134.99	136.07	0					49	22	3	0	0	0	0.22384	1	15753	15753		76.774	7.9873	1	330690			64687	1064	53333	53384	71204	71204					0.10127169001862057
YLAARPGP	8	Unmodified	_YLAARPGP_					0	0	0		nc|ENSG00000048828|Q9NZB2-2|FAM120A;nc|ENSG00000048828|Q9NZB2-5|FAM120A;FAM120A|p.R999*|1|0.08|ENSG00000048828|chr9:93562253-93562254|-/T|frameshift_variant;FAM120A|p.S1040Lfs*12|1|0.09|ENSG00000048828|chr9:93564300-93564301|-/C|frameshift_variant;FAM120A|p.V1027Tfs*33|1|0.06|ENSG00000048828|chr9:93564260-93564261|-/GACTGTATTTCCCC|frameshift_variant;nc|ENSG00000048828|Q9NZB2-4|FAM120A;ENSG00000048828|ENST00000277165|FAM120A;nc|ENSG00000048828|Q9NZB2-6|FAM120A	nc|ENSG00000048828|Q9NZB2-2|FAM120A	nc|ENSG00000048828|Q9NZB2-2|FAM120A	MULTI-MSMS	OvCa99_classI_Rep5	1	422.7383117675781	2	422.73742	843.460287	2.5012	0.0010573	-0.052704	-2.228E-05	2.4485	0.0010351	422.7372841652777	86.894	1.955	86.894	86.553	88.508	0					111	46	4	0	0	0	0.73288	1	9220	9220		35.201	6.9464	1	13090000			64688	1161	53334	53385	71205	71205					0.03229550417131577
YLADIFTKL	9	Unmodified	_YLADIFTKL_					0	0	0		ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	MULTI-MSMS	OvCa99_classI_Rep5	1	542.3086547851562	2	542.307875	1082.6012	1.1023	0.0005978	1.0923	0.00059235	2.1946	0.0011901	542.3084073457006	131.38	0.79533	131.38	131.06	131.85	0					39	16	4	0	0	0	0.094791	1	15256	15256		98.582	32.153	1	679740			64689	9312	53335	53386	71206	71206					0.06320084279900584
YLADIFTKL	9	Unmodified	_YLADIFTKL_					0	0	0		ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	MULTI-MSMS	OvCa9_classI_Rep2	2	542.3082885742188	2	542.307875	1082.6012	0.17652	9.5728E-05	-1.0108	-0.00054818	-0.83431	-0.00045245	542.307107992951	130.93	0.74733	130.7	130.45	131.2	-0.22696					30	14	3	0	0	0	0.53483	1	12895	12895		39.253	3.6345	1	38288			64690	9312	53335	53386	71207	71207					0.06320084279900584
YLADIFTKL	9	Unmodified	_YLADIFTKL_					0	0	0		ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	542.307875	1082.6012	0.33428	0.00018128	-0.66226	-0.00035915	-0.32798	-0.00017787	542.307418956571	131.86	0.69719	130.74	130.44	131.14	-1.1249	0.050347	0.0010526	NaN	39.253	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34483			64691	9312	53335	53386							0.06320084279900584
YLADIFTKL	9	Unmodified	_YLADIFTKL_					0	0	0		ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	ENSG00000236287|ENST00000413761|ZBED5	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	542.307875	1082.6012	3.3654	0.0018251	-4.0341	-0.0021877	-0.66865	-0.00036261	542.3054385830468	132.12	0.81047	130.62	130.38	131.19	-1.5015	-0.065012	-0.0026045	NaN	39.253	30	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44499			64692	9312	53335	53386							0.06320084279900584
YLADLNSLI	9	Unmodified	_YLADLNSLI_					0	0	0			REV__L1MA6_dup4553|chr14:32965001-32966588:+|1.0811544242595916|0.0860524180403581|3.65|423.0|65|1|anti-sense	REV__L1MA6_dup4553|chr14:32965001-32966588:+|1.0811544242595916|0.0860524180403581|3.65|423.0|65|1|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	511.2850036621094	2	511.281857	1020.54916	2.2077	0.0011288	-0.53598	-0.00027404	1.6717	0.00085472	511.28164590034754	93.861	1.7379	93.861	93.59	95.328	0					96	40	5	0	0	0	0.18193	1	10176	10176		79.451	9.8234	1	23883000	+		64693	28401	53336	53387	71208	71208					0.039709208661292905
YLADLYHFV	9	Unmodified	_YLADLYHFV_					0	0	0		ENSG00000100092|ENST00000649765|SH3BP1;nc|ENSG00000100092|Q9Y3L3-2|SH3BP1;ENST00000459646.1_1_22:38039726-38040999:+|nuORF	ENSG00000100092|ENST00000649765|SH3BP1	ENSG00000100092|ENST00000649765|SH3BP1	MULTI-MSMS	OvCa99_classI_Rep5	1	570.791259765625	2	570.78985	1139.56515	1.5314	0.00087414	1.3046	0.00074467	2.8361	0.0016188	570.7904885520446	127.12	1.3601	127.12	126.87	128.23	0					51	29	2	0	0	0	0.22961	1	14712	14712		71.296	29.869	1	2001900			64694	2006	53337	53388	71209	71209					0.0009462710302159394
YLAEPIHIK	9	Unmodified	_YLAEPIHIK_					0	0	0		tr|A0A553SK50|A0A553SK50_NIACIPrimosomalproteinDnaIOS=NialliacirculansOX=1397GN=dnaIPE=4SV=1	tr|A0A553SK50|A0A553SK50_NIACIPrimosomalproteinDnaIOS=NialliacirculansOX=1397GN=dnaIPE=4SV=1	tr|A0A553SK50|A0A553SK50_NIACIPrimosomalproteinDnaIOS=NialliacirculansOX=1397GN=dnaIPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.3032836914062	2	542.313492	1082.61243	-0.4441	-0.00024084	0.29386	0.00015936	-0.15024	-8.1478E-05	542.3135549925681	123.13	0.59448	121.76	121.6	122.2	-1.3666					15	11	2	0	0	0	0.027441	1	11665	11665		58.782	9.3404	1	14607			64695	33577	53338	53389	71210	71210					0.07442906374035374
YLAGFAFGII	10	Unmodified	_YLAGFAFGII_					0	0	0			REV__nc|ENSG00000049130|P21583-3|KITLG	REV__nc|ENSG00000049130|P21583-3|KITLG	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.27392578125	2	536.29731	1070.58007	0.46314	0.00024838	2.0016	0.0010735	2.4648	0.0013218	536.2984805443934	45.434	0.46507	45.434	45.159	45.624	0					26	10	3	0	0	0	0.027007	1	3142	3142		19.36	0	1	2691700	+		64696	16674	53339	53390	71211	71211					0.04760118971034899
YLAGRRRA	8	Unmodified	_YLAGRRRA_					0	0	0			REV__ENST00000557111.5_1_14:50065159-50065195:-|nuORF	REV__ENST00000557111.5_1_14:50065159-50065195:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	481.2746276855469	2	481.785767	961.556982	-0.25532	-0.00012301	-0.16188	-7.7994E-05	-0.41721	-0.000201	481.7855797857985	33.462	0.44308	33.462	33.285	33.728	0					14	8	4	0	0	0	0.028476	1	1543	1543		35.201	4.6971	1	132990	+		64697	27569	53340	53391	71212	71212					0.07466537696927844
YLAIFVLPV	9	Unmodified	_YLAIFVLPV_					0	0	0			REV__tr|A0A7D6VUD7|A0A7D6VUD7_9CLOTPTSsugartransportersubunitIICOS=ClostridiumintestinaleOX=36845GN=HZF06_06865PE=4SV=1	REV__tr|A0A7D6VUD7|A0A7D6VUD7_9CLOTPTSsugartransportersubunitIICOS=ClostridiumintestinaleOX=36845GN=HZF06_06865PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.788818359375	2	517.817879	1033.6212	-0.75119	-0.00038898	2.051	0.0010621	1.2998	0.00067308	518.3187068485802	79.692	1.9835	76.941	76.322	78.306	-2.7514					106	40	5	0	0	0	0.027462	1	6633	6633		21.702	0	1	320030	+		64698	31670	53341	53392	71213	71213					0.10573880010497305
YLAILFLSPG	10	Unmodified	_YLAILFLSPG_					0	0	0			REV__ENST00000375120.3_1_1:20238803-20239091:+|nuORF	REV__ENST00000375120.3_1_1:20238803-20239091:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	547.31591796875	2	547.318243	1092.62193	0.81211	0.00044448	0.88685	0.00048539	1.699	0.00092987	547.3185659333061	142.41	0.40048	142.41	142.18	142.59	0					14	7	2	0	0	0	0.62668	1	16638	16638		38.806	2.3594	1	60118	+		64699	25081	53342	53393	71214	71214					0.0793267465955978
YLAILFLSPG	10	Unmodified	_YLAILFLSPG_					0	0	0			REV__ENST00000375120.3_1_1:20238803-20239091:+|nuORF	REV__ENST00000375120.3_1_1:20238803-20239091:+|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	547.318243	1092.62193	0.81211	0.00044448	0.88685	0.00048539	1.699	0.00092987	547.3185659333061	142.41	0.40048	142.41	142.18	142.59	0	0	0	NaN	38.806	14	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60118	+		64700	25081	53342	53393							0.0793267465955978
YLAKEVIIY	9	Unmodified	_YLAKEVIIY_					0	0	0			REV__ENSG00000168619|ENST00000265707|ADAM18	REV__ENSG00000168619|ENST00000265707|ADAM18	MULTI-MSMS	OvCa9_classI_Rep2	2	556.3236083984375	2	556.323525	1110.6325	1.2043	0.00066999	-1.3301	-0.00073995	-0.12576	-6.9962E-05	556.32262440789	125.61	1.4815	125.38	125.01	126.49	-0.2359					75	29	4	0	0	0	0.29717	2	12239	12228;12239		63.306	6.0627	1	284060	+		64701	21388	53343	53394	71215;71216	71216					0.08160657314010678
YLAKNTLYI	9	Unmodified	_YLAKNTLYI_					0	0	0		tr|A0A553SUJ1|A0A553SUJ1_NIACIHydroxyaciddehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_00225PE=3SV=1	tr|A0A553SUJ1|A0A553SUJ1_NIACIHydroxyaciddehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_00225PE=3SV=1	tr|A0A553SUJ1|A0A553SUJ1_NIACIHydroxyaciddehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_00225PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	549.8140258789062	2	549.813325	1097.6121	1.0707	0.00058869	-2.5432	-0.0013983	-1.4724	-0.00080957	549.8118594915368	65.959	2.5762	63.264	62.872	65.448	-2.6958					98	51	2	0	0	0	0.2422	1	5131	5131		69.628	10.846	1	960460			64702	34615	53344	53395	71217	71217					0.06719486654174034
YLALVRTLN	9	Unmodified	_YLALVRTLN_					0	0	0			REV__nc|ENSG00000143303|Q96FB5-2|METTL25B	REV__nc|ENSG00000143303|Q96FB5-2|METTL25B	MULTI-MSMS	OvCa9_classI_Rep2	2	531.8158569335938	2	531.818941	1061.62333	-1.8698	-0.0009944	-1.9558	-0.0010401	-3.8256	-0.0020345	531.8177087577225	138.81	4.9802	138.59	137.03	142.01	-0.22696					301	101	4	0	0	0	0.69123	1	13707	13707		20.947	0.95016	1	166960	+		64703	19828	53345	53396	71218	71218					0.09498308748334239
YLAMESSAK	9	Unmodified	_YLAMESSAK_					0	0	0			REV__ENST00000473744.5_1_14:23235910-23239613:+|nuORF	REV__ENST00000473744.5_1_14:23235910-23239613:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.759765625	2	500.244418	998.474282	-0.016709	-8.3584E-06	1.2325	0.00061655	1.2158	0.00060819	500.245346770149	59.985	0.3915	56.555	56.407	56.799	-3.43					10	7	2	0	0	0	0.027462	1	4061	4061		27.882	7.4004	1	17538	+		64704	20425	53346	53397	71219	71219					-0.025015849367377996
YLANGQTKV	9	Unmodified	_YLANGQTKV_					0	0	0		ENSG00000265972|ENST00000582401|TXNIP;nc|ENSG00000265972|Q9H3M7-2|TXNIP;ENST00000488537.1_1_1:145440216-145440639:+|nuORF	ENSG00000265972|ENST00000582401|TXNIP	ENSG00000265972|ENST00000582401|TXNIP	MULTI-MSMS	OvCa99_classI_Rep5	1	497.2731018066406	2	497.271824	992.529095	-0.43052	-0.00021409	0.63416	0.00031535	0.20364	0.00010127	497.27200876107645	48.966	0.61072	48.966	48.762	49.373	0					27	13	3	0	0	0	0.025955	1	3630	3630		139.97	35.224	1	1145600			64705	9525	53347	53398	71220	71220					0.03253169926199462
YLAQPPLYK	9	Unmodified	_YLAQPPLYK_					0	0	0		tr|A0A7D7A5B5|A0A7D7A5B5_9CLOTDNAtopoisomerase(ATP-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=HZF06_05260PE=4SV=1	tr|A0A7D7A5B5|A0A7D7A5B5_9CLOTDNAtopoisomerase(ATP-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=HZF06_05260PE=4SV=1	tr|A0A7D7A5B5|A0A7D7A5B5_9CLOTDNAtopoisomerase(ATP-hydrolyzing)OS=ClostridiumintestinaleOX=36845GN=HZF06_05260PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	546.8069458007812	2	546.808042	1091.60153	-0.5412	-0.00029593	-3.3981	-0.0018581	-3.9393	-0.0021541	546.8061006605118	57.83	1.5522	55.038	54.625	56.177	-2.792					87	30	4	0	0	0	0.55588	1	4147	4147		37.159	0	1	347280			64706	36164	53348	53399	71221	71221					0.0593950399975256
YLARNTLII	9	Unmodified	_YLARNTLII_					0	0	0			REV__tr|A0A7D6ZW34|A0A7D6ZW34_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16235PE=4SV=1	REV__tr|A0A7D6ZW34|A0A7D6ZW34_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16235PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	538.8258666992188	2	538.826766	1075.63898	0.036954	1.9912E-05	-1.0034	-0.00054068	-0.96648	-0.00052077	538.8262542166998	91.851	2.953	90.615	90.272	93.225	-1.2355					156	56	5	0	0	0	0.24951	10	8145	8142;8145;8151;8158;8164;8176;8182;8194;8201;8214		68.787	17.451	1	2991400	+		64707	32271	53349	53400	71222;71223;71224;71225;71226;71227;71228;71229;71230;71231	71223					0.10418595265377917
YLARNTLII	9	Unmodified	_YLARNTLII_					0	0	0			REV__tr|A0A7D6ZW34|A0A7D6ZW34_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16235PE=4SV=1	REV__tr|A0A7D6ZW34|A0A7D6ZW34_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16235PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	538.8258056640625	2	538.826766	1075.63898	-0.48403	-0.00026081	-0.63187	-0.00034047	-1.1159	-0.00060128	538.8264089521746	92.869	3.0409	90.907	90.606	93.647	-1.9617					158	60	5	0	0	0	0.18193	11	5897	5897;5903;5909;5914;5926;5944;5950;5957;5963;5970;5983		79.451	18.479	1	3810900	+		64708	32271	53349	53400	71232;71233;71234;71235;71236;71237;71238;71239;71240;71241;71242	71232					0.10418595265377917
YLARNTLII	9	Unmodified	_YLARNTLII_					0	0	0			REV__tr|A0A7D6ZW34|A0A7D6ZW34_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16235PE=4SV=1	REV__tr|A0A7D6ZW34|A0A7D6ZW34_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16235PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.8270263671875	2	538.826766	1075.63898	-1.3695	-0.0007379	0.5105	0.00027507	-0.85896	-0.00046283	538.8270006767474	93.446	2.9138	90.938	90.614	93.527	-2.5072					151	59	5	0	0	0	0.24951	3	8216	8131;8204;8216		68.787	14.13	1	3549600	+		64709	32271	53349	53400	71243;71244;71245	71245					0.10418595265377917
YLARRFWA	8	Unmodified	_YLARRFWA_					0	0	0		ENST00000518477.5_1_5:78317432-78365396:-|nuORF	ENST00000518477.5_1_5:78317432-78365396:-|nuORF	ENST00000518477.5_1_5:78317432-78365396:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	540.806884765625	2	541.798343	1081.58213	-1.5061	-0.00081598	1.2436	0.00067378	-0.26247	-0.00014221	541.7977525665171	102.98	0.29556	102.3	102.18	102.48	-0.68459					7	5	2	0	0	0	0.028476	1	9481	9481		28.254	0	1	10480			64710	13071	53350	53401	71246	71246					0.04460592499526683
YLATFALKV	9	Unmodified	_YLATFALKV_					0	0	0		ENSG00000144935|ENST00000476941|TRPC1;nc|ENSG00000144935|P48995-2|TRPC1	ENSG00000144935|ENST00000476941|TRPC1	ENSG00000144935|ENST00000476941|TRPC1	MULTI-SECPEP	OvCa99_classI_Rep5	1	513.7725219726562	2	513.305136	1024.59572	1.1383	0.00058431	-2.9276	-0.0015028	-1.7893	-0.00091844	513.3033884624374	83.523	0.50739	83.523	83.293	83.801	0					19	11	2	0	0	0	0.027455	1	8719	8719		60.972	9.7792	1	454660			64711	5194	53351	53402	71247	71247					0.08440405488067881
YLAWIKKQP	9	Unmodified	_YLAWIKKQP_					0	0	0		tr|A0A553SFS1|A0A553SFS1_NIACIHNHendonucleaseOS=NialliacirculansOX=1397GN=CEQ21_09400PE=4SV=1	tr|A0A553SFS1|A0A553SFS1_NIACIHNHendonucleaseOS=NialliacirculansOX=1397GN=CEQ21_09400PE=4SV=1	tr|A0A553SFS1|A0A553SFS1_NIACIHNHendonucleaseOS=NialliacirculansOX=1397GN=CEQ21_09400PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	572.8486938476562	2	573.837134	1145.65972	2.0201	0.0011592	-0.49211	-0.00028239	1.528	0.0008768	573.8368491769907	76.367	1.3222	76.367	75.639	76.961	0					68	32	3	0	0	0	0.027462	1	7680	7680		40.573	0	1	1134300			64712	33068	53352	53403	71248	71248					0.09271185645025071
YLCRGVYSI	9	Unmodified	_YLCRGVYSI_					0	0	0		L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|205|1|anti-sense;L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|265|2|anti-sense;L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|219|1|anti-sense	L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|205|1|anti-sense	L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|205|1|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	537.2804565429688	2	537.276052	1072.53755	2.3121	0.0012423	3.0841	0.001657	5.3963	0.0028993	537.277546099576	106.47	0.53075	106.47	106.32	106.85	0					18	11	2	0	0	0	0.29717	1	11982	11982		63.306	5.495	1	2371700			64713	14706	53353	53404	71249	71249					0.004184005711522332
YLCRGVYSI	9	Unmodified	_YLCRGVYSI_					0	0	0		L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|205|1|anti-sense;L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|265|2|anti-sense;L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|219|1|anti-sense	L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|205|1|anti-sense	L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|205|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.7601318359375	2	537.276052	1072.53755	-0.32922	-0.00017688	-0.027483	-1.4766E-05	-0.3567	-0.00019165	537.2753736040413	65.307	0.43519	65.307	65.072	65.507	0					15	10	3	0	0	0	0.027462	1	5963	5963		17.365	0	1	243400			64714	14706	53353	53404	71250	71250					0.004184005711522332
YLCRGVYSI	9	Unmodified	_YLCRGVYSI_					0	0	0		L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|205|1|anti-sense;L1PA5_dup4810|chr6:152028159-152034290:+|1.1914758245087174|0.3642032674974997|1.71|427.0|265|2|anti-sense;L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|219|1|anti-sense	L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|205|1|anti-sense	L1PA7_dup4924|chr6:2286245-2292695:+|1.635145983497484|0.2509383892152794|2.7|429.0|205|1|anti-sense	MULTI-MATCH	OvCa9_classI_Rep2	2		2	537.276052	1072.53755	-0.99453	-0.00053434	2.529	0.0013588	1.5345	0.00082443	537.2773686448074	106.43	1.0973	106.12	105.33	106.42	-0.30836	-0.17651	-0.00011521	NaN	63.306	39	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32158			64715	14706	53353	53404							0.004184005711522332
YLDAIKLLL	9	Unmodified	_YLDAIKLLL_					0	0	0		nc|ENSG00000119509|Q9Y283-2|INVS;ENSG00000119509|ENST00000262457|INVS	nc|ENSG00000119509|Q9Y283-2|INVS	nc|ENSG00000119509|Q9Y283-2|INVS	MULTI-MSMS	OvCa99_classI_Rep5	1	531.333740234375	2	531.333893	1060.65323	1.5021	0.00079813	0.80548	0.00042798	2.3076	0.0012261	531.3342284690884	147.78	0.72409	147.78	147.5	148.23	0					31	14	3	0	0	0	0.37135	1	17305	17305		54.776	6.8607	1	170770			64716	3367	53354	53405	71251	71251					0.12533247693659177
YLDDLLPKL	9	Unmodified	_YLDDLLPKL_					0	0	0		ENSG00000151148|ENST00000342494|UBE3B;nc|ENSG00000151148|Q7Z3V4-2|UBE3B;ENST00000535900.5_1_12:109939233-109948161:+|nuORF	ENSG00000151148|ENST00000342494|UBE3B	ENSG00000151148|ENST00000342494|UBE3B	MULTI-MSMS	OvCa99_classI_Rep5	1	545.3155517578125	2	545.313158	1088.61176	1.5726	0.00085755	0.72462	0.00039514	2.2972	0.0012527	545.3136228096721	135.28	0.4662	135.28	134.99	135.46	0					20	9	3	0	0	0	0.064985	1	15764	15764		110.12	27.879	1	113310			64717	5536	53355	53406	71252	71252					0.07100066934322058
YLDEIRHFL	9	Unmodified	_YLDEIRHFL_					0	0	0		ENSG00000129673|ENST00000392492|AANAT;nc|ENSG00000129673|Q16613-2|AANAT	ENSG00000129673|ENST00000392492|AANAT	ENSG00000129673|ENST00000392492|AANAT	MULTI-SECPEP	OvCa99_classI_Rep5	1	604.2483520507812	2	603.319306	1204.62406	1.0801	0.00065162	2.4713	0.001491	3.5513	0.0021426	603.320321729733	124.22	0.59366	124.22	123.97	124.56	0					23	12	3	0	0	0	0.027462	1	14342	14342		55.504	4.1688	1	321180			64718	3942	53356	53407	71253	71253					0.029931033973753074
YLDEQIKKV	9	Unmodified	_YLDEQIKKV_					0	0	0		nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	MULTI-SECPEP	OvCa99_classI_Rep5	1	568.84765625	2	568.321514	1134.62847	-0.049591	-2.8184E-05	-0.54698	-0.00031086	-0.59657	-0.00033904	568.3209793929058	60.455	0.70571	60.455	60.153	60.859	0					34	16	4	0	0	0	0.027446	1	5288	5288		69.628	12.907	1	1150200			64719	4564	53357	53408	71254	71254					0.06654567820260127
YLDEQIKKV	9	Unmodified	_YLDEQIKKV_					0	0	0		nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	MULTI-MATCH	OvCa9_classI_Rep2	2		2	568.321514	1134.62847	-1.7939	-0.0010195	1.6656	0.0009466	-0.12828	-7.2906E-05	568.8245312983408	63.404	0.41551	60.659	60.48	60.895	-2.7444	0.053469	0.0028566	NaN	60.118	11	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12516			64720	4564	53357	53408							0.06654567820260127
YLDEQIKKV	9	Unmodified	_YLDEQIKKV_					0	0	0		nc|ENSG00000137177|Q9H1H9-3|KIF13A;nc|ENSG00000137177|Q9H1H9-4|KIF13A;nc|ENSG00000137177|Q9H1H9-2|KIF13A;ENSG00000137177|ENST00000259711|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	nc|ENSG00000137177|Q9H1H9-3|KIF13A	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	568.321514	1134.62847	0.56241	0.00031963	-2.9719	-0.001689	-2.4095	-0.0013694	568.3198308056163	64.178	0.78033	60.703	60.49	61.271	-3.475	0.097589	-0.0024145	NaN	60.118	25	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	60815			64721	4564	53357	53408							0.06654567820260127
YLDKFIRL	8	Unmodified	_YLDKFIRL_					0	0	0		ENSG00000130119|ENST00000360845|GNL3L;GNL3L|p.G499Vfs*4|1|0.04|ENSG00000130119|chrX:54558484-54558485|-/T|frameshift_variant;ENST00000462279.5_1_5:60188520-60189039:-|nuORF	ENSG00000130119|ENST00000360845|GNL3L	ENSG00000130119|ENST00000360845|GNL3L	MULTI-MSMS	OvCa99_classI_Rep5	1	534.31396484375	2	534.316035	1066.61752	1.3167	0.00070353	0.87807	0.00046917	2.1948	0.0011727	534.3164687083066	109.77	0.98679	109.77	109.46	110.45	0					46	21	4	0	0	0	0.47824	1	12439	12439		79.713	18.741	1	1333300			64722	3956	53358	53409	71255	71255					0.08687210236666942
YLDKVRFI	8	Unmodified	_YLDKVRFI_					0	0	0			REV__tr|A0A7D6ZVW5|A0A7D6ZVW5_9CLOTDNApolymeraseIVOS=ClostridiumintestinaleOX=36845GN=dinBPE=3SV=1	REV__tr|A0A7D6ZVW5|A0A7D6ZVW5_9CLOTDNApolymeraseIVOS=ClostridiumintestinaleOX=36845GN=dinBPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	527.3101196289062	2	527.30821	1052.60187	1.4843	0.00078271	0.36148	0.00019061	1.8458	0.00097332	527.3082384061421	83.001	1.0624	83.001	82.694	83.757	0					62	24	5	0	0	0	0.10246	1	8609	8609		143.11	0	1	4053700	+		64723	32265	53359	53410	71256	71256					0.07766923719623264
YLDKVRFI	8	Unmodified	_YLDKVRFI_					0	0	0			REV__tr|A0A7D6ZVW5|A0A7D6ZVW5_9CLOTDNApolymeraseIVOS=ClostridiumintestinaleOX=36845GN=dinBPE=3SV=1	REV__tr|A0A7D6ZVW5|A0A7D6ZVW5_9CLOTDNApolymeraseIVOS=ClostridiumintestinaleOX=36845GN=dinBPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	527.3096923828125	2	527.30821	1052.60187	1.907	0.0010056	0.13901	7.3302E-05	2.046	0.0010789	527.3081596889355	95.373	1.3446	95.373	95.033	96.378	0					93	31	4	0	0	0	0.31378	1	10415	10415		104.75	0	1	5503400	+		64724	32265	53359	53410	71257	71257					0.07766923719623264
YLDLIDNLL	9	Unmodified	_YLDLIDNLL_					0	0	0		tr|A0A7D6VNR2|A0A7D6VNR2_9CLOTHistidinol-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_13625PE=3SV=1	tr|A0A7D6VNR2|A0A7D6VNR2_9CLOTHistidinol-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_13625PE=3SV=1	tr|A0A7D6VNR2|A0A7D6VNR2_9CLOTHistidinol-phosphataseOS=ClostridiumintestinaleOX=36845GN=HZF06_13625PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	546.3040161132812	2	546.30279	1090.59103	-0.72597	-0.0003966	-0.0068944	-3.7664E-06	-0.73287	-0.00040037	546.3025859564939	115.39	1.5791	114.35	114.01	115.59	-1.0414					55	31	2	0	0	0	0.28934	1	8582	8582		64.207	0	1	148410			64725	34723	53360	53411	71258	71258					0.04935476554669549
YLDLNLDKCY	10	Unmodified	_YLDLNLDKCY_					0	0	0		ENSG00000136156|ENST00000647800|ITM2B	ENSG00000136156|ENST00000647800|ITM2B	ENSG00000136156|ENST00000647800|ITM2B	MULTI-SECPEP	OvCa9_classI_Rep2	2	629.8486328125	2	630.302464	1258.59037	-0.33991	-0.00021424	3.5872	0.002261	3.2473	0.0020468	630.3045598025843	81.564	0.98234	79.916	79.665	80.648	-1.6485					34	18	3	0	0	0	0.026734	1	6899	6899		56.721	3.7844	1	43713			64726	4466	53361	53412	71259	71259					-0.028576861566989464
YLDPAQRGV	9	Unmodified	_YLDPAQRGV_					0	0	0		nc|ENSG00000130731|Q96S19-3|METTL26;nc|ENSG00000130731|Q96S19-5|METTL26;nc|ENSG00000130731|Q96S19-2|METTL26;ENST00000448973.6_1_16:685849-686290:-|nuORF;nc|ENSG00000130731|Q96S19-6|METTL26;ENSG00000130731|ENST00000301686|METTL26;nc|ENSG00000130731|Q96S19-4|METTL26	nc|ENSG00000130731|Q96S19-3|METTL26	nc|ENSG00000130731|Q96S19-3|METTL26	MULTI-MSMS	OvCa99_classI_Rep5	1	509.77081298828125	2	509.769448	1017.52434	-0.60523	-0.00030853	0.12758	6.5037E-05	-0.47765	-0.00024349	509.76942784287564	63.745	0.87857	63.745	63.496	64.375	0					52	21	4	0	0	0	0.22035	1	5748	5748		72.879	35.068	1	3419600			64727	4007	53362	53413	71260	71260					0.01628285783431238
YLDQFKNPLIL	11	Unmodified	_YLDQFKNPLIL_					0	0	0		ENSG00000064270|ENST00000262429|ATP2C2;nc|ENSG00000064270|O75185-2|ATP2C2;nc|ENSG00000064270|O75185-3|ATP2C2	ENSG00000064270|ENST00000262429|ATP2C2	ENSG00000064270|ENST00000262429|ATP2C2	MULTI-MSMS	OvCa9_classI_Rep4_	4	455.2596740722656	3	455.258856	1362.75474	1.5519	0.0007065	-3.8566	-0.0017557	-2.3047	-0.0010492	455.25703723228327	84.943	1.7623	82.297	81.931	83.693	-2.6463					100	35	4	0	0	0	0.72483	1	7150	7150		17.833	0	1	304000			64728	1296	53363	53414	71261	71261					0.08787074325573485
YLDQTLPRAP	10	Unmodified	_YLDQTLPRAP_					0	0	0		nc|ENSG00000214826|Q92771|DDX12P;nc|ENSG00000013573|Q96FC9-4|DDX11;nc|ENSG00000013573|Q96FC9-3|DDX11;ENSG00000013573|ENST00000542838|DDX11;nc|ENSG00000256263|A8MPP1|DDX11L8;ENST00000435753.6_1_12:31250908-31256767:+|nuORF;ENST00000536265.5_1_12:31242773-31256767:+|nuORF	nc|ENSG00000214826|Q92771|DDX12P;ENST00000536265.5_1_12:31242773-31256767:+|nuORF	nc|ENSG00000214826|Q92771|DDX12P	MULTI-SECPEP	OvCa9_classI_Rep2	2	586.7874145507812	2	587.316763	1172.61897	-1.7741	-0.001042	0.64747	0.00038027	-1.1267	-0.00066171	587.3170447326607	62.003	0.80512	59.244	58.777	59.582	-2.7593					27	15	2	0	0	0	0.026826	1	4651	4651		36.447	8.3653	1	37414			64729	15313;13388	53364	53415	71262	71262					0.0395679953473973
YLDRVRSL	8	Unmodified	_YLDRVRSL_					0	0	0		ENSG00000111057|ENST00000388835|KRT18;ENST00000549078.5_1_12:53342924-53344195:+|nuORF;ENST00000506277.1_1_5:36885388-36885895:+|nuORF;ENST00000402024.2_1_6:116779363-116779789:-|nuORF;ENST00000396959.2_1_3:12829511-12830132:-|nuORF;ENST00000510337.1_1_5:122971848-122972142:+|nuORF;ENST00000411618.1_1_9:30800375-30800732:-|nuORF;ENST00000453838.2_1_1:182929095-182929497:-|nuORF;ENST00000577198.5_1_17:26603697-26633156:-|nuORF	ENSG00000111057|ENST00000388835|KRT18;ENST00000577198.5_1_17:26603697-26633156:-|nuORF	ENSG00000111057|ENST00000388835|KRT18	MULTI-MSMS	OvCa99_classI_Rep5	1	511.2940368652344	2	511.293091	1020.57163	-0.57849	-0.00029578	-0.059931	-3.0642E-05	-0.63843	-0.00032642	511.2930823606697	70.307	2.4045	70.307	70.046	72.45	0					116	59	5	0	0	0	0.70238	1	6719	6719		42.864	0	1	38334000			64730	2808;13956	53365	53416	71263	71263					0.06216565054421608
YLDVPYGEA	9	Unmodified	_YLDVPYGEA_					0	0	0			REV__ENSG00000139626|ENST00000267082|ITGB7	REV__ENSG00000139626|ENST00000267082|ITGB7	MULTI-SECPEP	OvCa99_classI_Rep5	1	514.7379760742188	2	513.742565	1025.47058	0.65493	0.00033647	1.4354	0.00073744	2.0904	0.0010739	513.743449442281	152.24	0.42841	152.24	151.97	152.4	0					12	8	2	0	0	0	0.027462	1	17829	17829		35.618	3.6634	1	57555	+		64731	19623	53366	53417	71264	71264					-0.04113931438951113
YLEAPNDFQLP	11	Unmodified	_YLEAPNDFQLP_					0	0	0			REV__ENST00000485407.1_1_13:39616195-39618420:+|nuORF	REV__ENST00000485407.1_1_13:39616195-39618420:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	436.21429443359375	3	436.215316	1305.62412	0.26482	0.00011552	-3.2731	-0.0014278	-3.0083	-0.0013123	436.2140024294141	39.204	2.2798	36.277	35.849	38.129	-2.9264					140	44	5	0	0	0	0.65267	1	1603	1603		39.873	5.7867	1	1076000	+		64732	22739	53367	53418	71265	71265					-0.016469413932782118
YLEAQDQKIF	10	Unmodified	_YLEAQDQKIF_					0	0	0			REV__tr|A0A553SME0|A0A553SME0_NIACIGAFdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22410PE=3SV=1	REV__tr|A0A553SME0|A0A553SME0_NIACIGAFdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_22410PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	419.2298889160156	3	418.883677	1253.6292	0.097551	4.0862E-05	3.3683	0.0014109	3.4659	0.0014518	418.8851263883731	61.089	0.7667	61.089	60.859	61.626	0					30	17	2	0	0	0	0.026843	1	5356	5356		46.457	12.37	1	279080	+		64733	30320	53368	53419	71266	71266					0.012533624693105594
YLEKAIKI	8	Unmodified	_YLEKAIKI_					0	0	0		ENST00000565455.5_1_16:8987857-9023250:-|nuORF;nc|ENSG00000187555|Q93009-3|USP7;ENSG00000187555|ENST00000344836|USP7	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	ENST00000565455.5_1_16:8987857-9023250:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	489.30645751953125	2	489.305136	976.595718	2.0749	0.0010153	0.033775	1.6526E-05	2.1087	0.0010318	489.3049908424141	79.922	1.1196	79.922	79.666	80.786	0					45	26	2	0	0	0	0.24597	1	8179	8179		116.9	5.2553	1	1477300			64734	8413	53369	53420	71267	71267					0.10648405488075241
YLELIKSSISL	11	Unmodified	_YLELIKSSISL_					0	0	0			REV__tr|A0A7D7A223|A0A7D7A223_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17895PE=4SV=1	REV__tr|A0A7D7A223|A0A7D7A223_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_17895PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	633.3688354492188	2	633.371204	1264.72785	-4.1446	-0.0026251	0.87395	0.00055353	-3.2707	-0.0020716	633.3716506579397	149.94	3.0119	148.99	147.85	150.86	-0.9512					218	59	5	0	0	0	0.72473	1	12685	12685		19.104	0.84144	1	281260	+		64735	32519	53370	53421	71268	71268					0.10607965714393686
YLELQIPLF	9	Unmodified	_YLELQIPLF_					0	0	0		ENSG00000205029|ENST00000378396|OR5D16	ENSG00000205029|ENST00000378396|OR5D16	ENSG00000205029|ENST00000378396|OR5D16	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.3082275390625	2	568.323525	1134.6325	0.15512	8.8157E-05	-3.4308	-0.0019498	-3.2757	-0.0018616	568.3215732264887	105.33	0.39522	105.33	105.13	105.53	0					12	8	2	0	0	0	0.027441	1	11845	11845		45.952	4.5253	1	438560			64736	9046	53371	53422	71269	71269					0.07056657313978576
YLELQIPLF	9	Unmodified	_YLELQIPLF_					0	0	0		ENSG00000205029|ENST00000378396|OR5D16	ENSG00000205029|ENST00000378396|OR5D16	ENSG00000205029|ENST00000378396|OR5D16	MULTI-MATCH	OvCa9_classI_Rep2	2		2	568.323525	1134.6325	-0.66766	-0.00037945	-4.2057	-0.0023902	-4.8734	-0.0027697	568.3208295270198	105.65	0.39975	105.22	105.05	105.45	-0.43642	-0.053465	-0.00019282	NaN	45.952	18	7	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21118			64737	9046	53371	53422							0.07056657313978576
YLELQIPLF	9	Unmodified	_YLELQIPLF_					0	0	0		ENSG00000205029|ENST00000378396|OR5D16	ENSG00000205029|ENST00000378396|OR5D16	ENSG00000205029|ENST00000378396|OR5D16	MULTI-MATCH	OvCa9_classI_Rep3	3		2	568.323525	1134.6325	0.27538	0.00015651	-4.8408	-0.0027512	-4.5654	-0.0025946	568.3206063632028	106.58	0.55598	105.31	105.11	105.67	-1.267	0.041217	-0.0009147	NaN	45.952	14	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37080			64738	9046	53371	53422							0.07056657313978576
YLELQIPLF	9	Unmodified	_YLELQIPLF_					0	0	0		ENSG00000205029|ENST00000378396|OR5D16	ENSG00000205029|ENST00000378396|OR5D16	ENSG00000205029|ENST00000378396|OR5D16	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	568.323525	1134.6325	-0.92442	-0.00052537	-3.6867	-0.0020952	-4.6111	-0.0026206	568.3212560119742	107.1	0.4735	105.22	105.01	105.49	-1.8785	-0.052434	0.00039715	NaN	45.952	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	32336			64739	9046	53371	53422							0.07056657313978576
YLELWVFY	8	Unmodified	_YLELWVFY_					0	0	0		ENSG00000102172|ENST00000404933|SMS;nc|ENSG00000102172|P52788-2|SMS	ENSG00000102172|ENST00000404933|SMS	ENSG00000102172|ENST00000404933|SMS	MULTI-SECPEP	OvCa9_classI_Rep3	3	567.312744140625	2	566.789318	1131.56408	-0.44398	-0.00025164	-3.5585	-0.0020169	-4.0025	-0.0022686	566.7871902320394	115.2	0.78944	114.15	113.85	114.64	-1.055					27	15	2	0	0	0	0.028476	1	8551	8551		28.254	0	1	27533			64740	2226	53372	53423	71270	71270					0.003564127341405765
YLEPDVILL	9	Unmodified	_YLEPDVILL_					0	0	0		tr|A0A553SIM7|A0A553SIM7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15170PE=4SV=1	tr|A0A553SIM7|A0A553SIM7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15170PE=4SV=1	tr|A0A553SIM7|A0A553SIM7_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_15170PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3060302734375	2	537.807708	1073.60086	2.1862	0.0011758	1.5582	0.00083799	3.7444	0.0020137	537.8084918840518	82.416	0.51071	82.416	82.141	82.652	0					17	11	2	0	0	0	0.027462	1	8563	8563		50.025	5.4935	1	369730			64741	33398	53373	53424	71271	71271					0.06700664560048608
YLEQFRRIVFW	11	Unmodified	_YLEQFRRIVFW_					0	0	0		nc|ENSG00000107815|Q96RR1-3|TWNK;nc|ENSG00000107815|Q96RR1-2|TWNK;ENSG00000107815|ENST00000311916|TWNK	nc|ENSG00000107815|Q96RR1-3|TWNK	nc|ENSG00000107815|Q96RR1-3|TWNK	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.3118286132812	3	519.617266	1555.82997	0.22104	0.00011485	-0.85157	-0.00044249	-0.63053	-0.00032764	519.9511465318659	81.14	0.58274	81.14	80.91	81.493	0					21	13	2	0	0	0	0.026497	1	8374	8374		9.6461	6.2374	1	1070600			64742	2617	53374	53425	71272	71272					0.07428676576637372
YLFAPHSGDL	10	Unmodified	_YLFAPHSGDL_					0	0	0			REV__ENSG00000085377|ENST00000652536|PREP	REV__ENSG00000085377|ENST00000652536|PREP	MULTI-SECPEP	OvCa9_classI_Rep2	2	560.8045043945312	2	560.277106	1118.53966	1.4853	0.00083218	0.96486	0.00054059	2.4502	0.0013728	560.2774807856755	129.48	0.74048	129.25	128.97	129.71	-0.22697					27	14	3	0	0	0	0.026915	1	12713	12713		35.618	0	1	29906	+		64743	17132	53375	53426	71273	71273					-0.014868474193917791
YLFAVNIKL	9	Unmodified	_YLFAVNIKL_					0	0	0		ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	ENSG00000137200|ENST00000373451|CMTR1	MULTI-MSMS	OvCa99_classI_Rep5	1	540.828125	2	540.826235	1079.63792	1.8504	0.0010008	1.1444	0.00061892	2.9948	0.0016197	540.8265474183584	133.58	0.84145	133.58	133.26	134.1	0					39	17	4	0	0	0	0.22961	1	15537	15537		71.296	7.9894	1	322210			64744	4566	53376	53427	71274	71274					0.10128380896458111
YLFDLPLKV	9	Unmodified	_YLFDLPLKV_					0	0	0		nc|ENSG00000130224|Q5VUJ6-2|LRCH2;ENSG00000130224|ENST00000317135|LRCH2	nc|ENSG00000130224|Q5VUJ6-2|LRCH2	nc|ENSG00000130224|Q5VUJ6-2|LRCH2	MULTI-MSMS	OvCa99_classI_Rep5	1	554.327880859375	2	554.326068	1106.63758	1.3219	0.00073275	0.83854	0.00046483	2.1604	0.0011976	554.3263437610784	144.19	0.49432	144.19	143.91	144.4	0					24	9	3	0	0	0	0.34132	1	16853	16853		58.23	13.853	1	135350			64745	3969	53377	53428	71275	71275					0.08852961176603458
YLFENKNLE	9	Unmodified	_YLFENKNLE_					0	0	0			REV__tr|A0A553SR83|A0A553SR83_NIACIGyrI-likesmallmoleculebindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00605PE=4SV=1	REV__tr|A0A553SR83|A0A553SR83_NIACIGyrI-likesmallmoleculebindingdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00605PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	585.2955322265625	2	585.295496	1168.57644	-0.608	-0.00035586	-0.35096	-0.00020542	-0.95896	-0.00056127	585.2953253508418	116.4	1.3841	115.03	114.6	115.98	-1.3645					51	26	3	0	0	0	0.22961	1	10859	10859		71.296	9.1883	1	95284	+		64746	30701	53378	53429	71276	71276					-0.001105955934690428
YLFERIKEL	9	Unmodified	_YLFERIKEL_					0	0	0		ENSG00000146842|ENST00000397622|TMEM209;nc|ENSG00000146842|Q96SK2-2|TMEM209	ENSG00000146842|ENST00000397622|TMEM209	ENSG00000146842|ENST00000397622|TMEM209	MULTI-MSMS	OvCa99_classI_Rep5	1	605.8485717773438	2	605.845156	1209.67576	3.1071	0.0018824	-1.0521	-0.00063739	2.0551	0.001245	605.8444258062002	97.796	1.0273	97.796	97.479	98.506	0					52	23	3	0	0	0	0.10421	1	10747	10747		96.034	24.156	1	3000300			64747	5310	53379	53430	71277	71277					0.07930847091279247
YLFFFFFFFER	11	Unmodified	_YLFFFFFFFER_					0	0	0		ENST00000526451.5_1_11:65764737-65764839:-|nuORF	ENST00000526451.5_1_11:65764737-65764839:-|nuORF	ENST00000526451.5_1_11:65764737-65764839:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.7601318359375	3	537.267463	1608.78056	-0.055939	-3.0054E-05	1.6518	0.00088744	1.5958	0.00085739	537.2679432837398	65.186	0.35136	65.186	64.995	65.347	0					12	8	2	0	0	0	0.026448	1	5963	5963		9.2118	6.1858	1	303870			64748	13216	53380	53431	71278	71278					0.0005196856782276882
YLFGTVIIW	9	Unmodified	_YLFGTVIIW_					0	0	0		tr|A0A553SS62|A0A553SS62_NIACIEamA/RhaTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_02360PE=3SV=1	tr|A0A553SS62|A0A553SS62_NIACIEamA/RhaTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_02360PE=3SV=1	tr|A0A553SS62|A0A553SS62_NIACIEamA/RhaTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_02360PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	556.3111572265625	2	556.312961	1110.61137	1.8161	0.0010103	-2.3345	-0.0012987	-0.5184	-0.00028839	556.3116345492649	127.11	0.89803	127.11	126.91	127.81	0					38	19	3	0	0	0	0.32337	1	14714	14714		60.294	5.5176	1	620680			64749	34337	53381	53432	71279	71279					0.06048692005128942
YLFGTVIIW	9	Unmodified	_YLFGTVIIW_					0	0	0		tr|A0A553SS62|A0A553SS62_NIACIEamA/RhaTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_02360PE=3SV=1	tr|A0A553SS62|A0A553SS62_NIACIEamA/RhaTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_02360PE=3SV=1	tr|A0A553SS62|A0A553SS62_NIACIEamA/RhaTfamilytransporterOS=NialliacirculansOX=1397GN=CEQ21_02360PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	556.312961	1110.61137	0.54324	0.00030221	-2.2741	-0.0012651	-1.7309	-0.0009629	556.3117110783148	127.93	0.54871	126.84	126.67	127.22	-1.0933	-0.13726	6.3351E-05	NaN	60.294	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11375			64750	34337	53381	53432							0.06048692005128942
YLFIKSQD	8	Unmodified	_YLFIKSQD_					0	0	0		ENSG00000146530|ENST00000275358|VWDE	ENSG00000146530|ENST00000275358|VWDE	ENSG00000146530|ENST00000275358|VWDE	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.8327941894531	2	507.26875	1012.52295	2.5942	0.001316	-4.3003	-0.0021814	-1.7061	-0.00086546	507.26662022357334	75.433	0.27161	75.433	75.251	75.523	0					8	6	2	0	0	0	0.028476	1	7496	7496		50.025	0	1	269900			64751	5297	53382	53433	71280	71280					0.017186516946594566
YLFILKAH	8	Unmodified	_YLFILKAH_					0	0	0		nc|ENSG00000166262|Q96M60-2|FAM227B;ENST00000561116.5_1_15:49868913-49903415:-|nuORF;ENSG00000166262|ENST00000299338|FAM227B	nc|ENSG00000166262|Q96M60-2|FAM227B	nc|ENSG00000166262|Q96M60-2|FAM227B	MULTI-SECPEP	OvCa9_classI_Rep2	2	503.3262023925781	2	502.80002	1003.58549	-0.097895	-4.9222E-05	2.5827	0.0012986	2.4849	0.0012494	502.80222157366256	113.62	0.44554	113.51	113.12	113.57	-0.11777					12	8	3	0	0	0	0.028476	1	10764	10764		23.037	0	1	25817			64752	15154	53383	53434	71281	71281					0.08383842553507748
YLFISSGYII	10	Unmodified	_YLFISSGYII_					0	0	0			REV__ENSG00000181499|ENST00000321252|OR6T1	REV__ENSG00000181499|ENST00000321252|OR6T1	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.3208618164062	2	588.320983	1174.62741	1.3926	0.00081932	2.6155	0.0015387	4.0081	0.0023581	588.8241401165003	130.58	0.62219	130.58	130.29	130.91	0					18	12	2	0	0	0	0.026915	1	15180	15180		35.618	0	1	126660	+		64753	22236	53384	53435	71282	71282					0.04708353451383118
YLFIVSTIYN	10	Unmodified	_YLFIVSTIYN_					0	0	0		ENST00000272091.7_1_1:226172934-226173006:-|nuORF	ENST00000272091.7_1_1:226172934-226173006:-|nuORF	ENST00000272091.7_1_1:226172934-226173006:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	616.2929077148438	2	616.831714	1231.64888	1.7408	0.0010738	-4.2595	-0.0026274	-2.5187	-0.0015536	617.3306614593647	129.36	0.42415	129.36	129.02	129.45	0					13	8	2	0	0	0	0.026752	1	15011	15011		53.351	27.288	1	95463			64754	9995	53385	53436	71283	71283					0.04231738480120839
YLFIVVTLHS	10	Unmodified	_YLFIVVTLHS_					0	0	0			REV__ENSG00000172640|ENST00000310248|OR10AD1	REV__ENSG00000172640|ENST00000310248|OR10AD1	MULTI-SECPEP	OvCa9_classI_Rep3	3	596.3225708007812	2	596.342249	1190.66995	0.047377	2.8253E-05	-3.2345	-0.0019288	-3.1871	-0.0019006	596.3396900113908	91.264	0.7551	89.24	88.778	89.534	-2.0241					25	14	4	0	0	0	0.026752	1	5659	5659		53.351	2.016	1	36939	+		64755	21716	53386	53437	71284	71284					0.08223748579621315
YLFIVVTLHS	10	Unmodified	_YLFIVVTLHS_					0	0	0			REV__ENSG00000172640|ENST00000310248|OR10AD1	REV__ENSG00000172640|ENST00000310248|OR10AD1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	596.342249	1190.66995	-0.10795	-6.4374E-05	-3.9011	-0.0023264	-4.0091	-0.0023908	596.3393880587781	91.779	0.45299	89.237	88.962	89.415	-2.5425	-0.0017824	-0.00048846	NaN	68.787	15	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34451	+		64756	21716	53386	53437							0.08223748579621315
YLFKISLCR	9	Unmodified	_YLFKISLCR_					0	0	0		ENST00000598734.1_1_19:39421606-39422228:+|nuORF	ENST00000598734.1_1_19:39421606-39422228:+|nuORF	ENST00000598734.1_1_19:39421606-39422228:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	571.8237915039062	2	571.823169	1141.63179	0.10677	6.1051E-05	-3.0532	-0.0017459	-2.9464	-0.0016848	571.8214194480303	73.66	5.2921	73.66	72.842	78.134	0					327	131	5	0	0	0	0.38529	1	7295	7295		53.351	5.6941	1	98438000			64757	14198	53387	53438	71285	71285					0.06663539393321116
YLFKVVLI	8	Unmodified	_YLFKVVLI_					0	0	0		ENSG00000103769|ENST00000261890|RAB11A;ENSG00000185236|ENST00000328024|RAB11B;nc|ENSG00000103769|P62491-2|RAB11A;ENST00000598706.1_1_19:8455252-8465174:+|nuORF;nc|ENSG00000185236|Q15907-2|RAB11B	ENSG00000103769|ENST00000261890|RAB11A	ENSG00000103769|ENST00000261890|RAB11A	MULTI-SECPEP	OvCa99_classI_Rep5	1	498.3016052246094	2	497.820421	993.62629	1.5293	0.0007613	0.64564	0.00032141	2.1749	0.0010827	497.8204169764635	135.34	0.51437	135.34	135.08	135.6	0					17	10	2	0	0	0	0.028476	1	15770	15770		52.299	22.458	1	90773			64758	2341	53388	53439	71286	71286					0.12922183873149606
YLFLFNDFL	9	Unmodified	_YLFLFNDFL_					0	0	0		ENSG00000187510|ENST00000344636|PLEKHG7	ENSG00000187510|ENST00000344636|PLEKHG7	ENSG00000187510|ENST00000344636|PLEKHG7	MULTI-MSMS	OvCa9_classI_Rep2	2	596.3056640625	2	596.307875	1190.6012	-1.7026	-0.0010153	-1.4337	-0.00085493	-3.1364	-0.0018702	596.3063733554482	51.837	3.4202	49.024	48.253	51.674	-2.8129					160	68	4	0	0	0	0.46377	1	3431	3431		45.952	1.5748	1	554130			64759	8405	53389	53440	71287	71287					0.013520842798925514
YLFLSERR	8	Unmodified	_YLFLSERR_					0	0	0			REV__ENST00000360947.7_1_14:21558364-21558454:-|nuORF	REV__ENST00000360947.7_1_14:21558364-21558454:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.2852172851562	2	542.300916	1082.58728	-0.26601	-0.00014426	-0.72241	-0.00039177	-0.98842	-0.00053602	542.3005419927537	104.81	1.1226	104.81	104.49	105.62	0					63	25	4	0	0	0	0.028476	1	11740	11740		40.573	16.37	1	6443400	+		64760	24841	53390	53441	71288	71288					0.04928851571457926
YLFNSVVNV	9	Unmodified	_YLFNSVVNV_					0	0	0		nc|ENSG00000090238|P61236|YPEL3;ENSG00000090238|ENST00000398841|YPEL3;ENST00000477675.1_1_22:22055420-22058252:-|nuORF;ENSG00000175155|ENST00000312655|YPEL2;ENSG00000100027|ENST00000339468|YPEL1;ENSG00000166793|ENST00000300022|YPEL4	nc|ENSG00000090238|P61236|YPEL3	nc|ENSG00000090238|P61236|YPEL3	MULTI-MSMS	OvCa99_classI_Rep5	1	527.7835693359375	2	527.782025	1053.5495	1.6527	0.00087227	0.23299	0.00012297	1.8857	0.00099523	527.7821332935467	134.69	0.79111	134.69	134.43	135.22	0					38	17	3	0	0	0	0.11471	2	15671	15671;15692		93.195	25.702	1	564780			64761	1833	53391	53442	71289;71290	71289					0.024863405860060084
YLFQILRAI	9	Unmodified	_YLFQILRAI_					0	0	0		CDKL3-PPP2CA|1|fusion;ENSG00000006837|ENST00000265334|CDKL3;nc|ENSG00000273345|Q8IVW4-2|CDKL3	CDKL3-PPP2CA|1|fusion	CDKL3-PPP2CA|1|fusion	MULTI-SECPEP	OvCa9_classI_Rep4_	4	569.2819213867188	2	568.844959	1135.67537	3.6644	0.0020845	-1.0281	-0.00058484	2.6363	0.0014997	568.8442734775805	134.17	0.88956	132.64	132.19	133.08	-1.5257					27	17	2	0	0	0	0.027462	1	12987	12987		31.955	0	1	30844			64762	214	53392	53443	71291	71291					0.11295472162078113
YLFQILRAI	9	Unmodified	_YLFQILRAI_					0	0	0		CDKL3-PPP2CA|1|fusion;ENSG00000006837|ENST00000265334|CDKL3;nc|ENSG00000273345|Q8IVW4-2|CDKL3	CDKL3-PPP2CA|1|fusion	CDKL3-PPP2CA|1|fusion	MULTI-MATCH	OvCa9_classI_Rep2	2		2	568.844959	1135.67537	-0.004856	-2.7623E-06	2.5953	0.0014763	2.5905	0.0014736	568.8463261361715	132.63	0.98685	132.4	131.98	132.97	-0.22697	-0.1726	0.0014855	NaN	24.203	34	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29641			64763	214	53392	53443							0.11295472162078113
YLFQILRAI	9	Unmodified	_YLFQILRAI_					0	0	0		CDKL3-PPP2CA|1|fusion;ENSG00000006837|ENST00000265334|CDKL3;nc|ENSG00000273345|Q8IVW4-2|CDKL3	CDKL3-PPP2CA|1|fusion	CDKL3-PPP2CA|1|fusion	MULTI-MATCH	OvCa9_classI_Rep3	3		2	568.844959	1135.67537	-0.67957	-0.00038657	3.0771	0.0017504	2.3975	0.0013638	568.8467927654749	133.8	0.73975	132.68	132.42	133.16	-1.1226	0.1065	0.0020336	NaN	24.203	18	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15923			64764	214	53392	53443							0.11295472162078113
YLFQPMYIH	9	Unmodified	_YLFQPMYIH_					0	0	0			REV__L1PB1_dup5905|chr7:93807211-93809400:+|8.337698263303487|0.2056128638309657|5.34|416.0|129|3|anti-sense	REV__L1PB1_dup5905|chr7:93807211-93809400:+|8.337698263303487|0.2056128638309657|5.34|416.0|129|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	606.30078125	2	606.299527	1210.5845	1.5729	0.00095366	0.30704	0.00018616	1.88	0.0011398	606.2996215879486	130.08	3.6751	130.08	129.54	133.22	0					138	77	2	0	0	0	0.58665	1	15199	15199		33.516	3.1979	1	485860	+		64765	28592	53393	53444	71292	71292					-0.012367398777087146
YLFRKNSFI	9	Unmodified	_YLFRKNSFI_					0	0	0			REV__Tigger1_dup11946|chr22:15828868-15829349:-|2.0143775268303656|0.126984307270513|3.99|417.0|15|3|sense	REV__Tigger1_dup11946|chr22:15828868-15829349:-|2.0143775268303656|0.126984307270513|3.99|417.0|15|3|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	594.3319091796875	2	594.332216	1186.64988	1.3041	0.00077508	-2.4068	-0.0014304	-1.1027	-0.00065536	594.3305743452621	143.29	1.3269	143.29	142.93	144.26	0					73	26	4	0	0	0	0.46377	1	16773	16773		45.952	3.0877	1	1219100	+		64766	29500	53394	53445	71293	71293					0.06401997639659385
YLFVTHLSL	9	Unmodified	_YLFVTHLSL_					0	0	0			REV__ENST00000593077.1_2_19:11666299-11666497:-|nuORF	REV__ENST00000593077.1_2_19:11666299-11666497:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	546.808837890625	2	546.808042	1091.60153	-0.99544	-0.00054432	0.69287	0.00037887	-0.30258	-0.00016545	546.8082578719798	116.77	2.0318	116.64	116.42	118.45	-0.12868					100	40	4	0	0	0	0.29717	1	11202	11202		63.306	7.8021	1	305590	+		64767	27957	53395	53446	71294	71294					0.059395039997752974
YLFVVLLLL	9	Unmodified	_YLFVVLLLL_					0	0	0			REV__ENSG00000237651|ENST00000432605|C2orf74	REV__ENSG00000237651|ENST00000432605|C2orf74	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.283447265625	2	546.857004	1091.69945	3.1421	0.0017183	2.8431	0.0015548	5.9852	0.0032731	546.8585470426763	133.45	1.3764	131.93	131.61	132.98	-1.5257					58	25	3	0	0	0	0.02744	1	12882	12882		29.842	0	1	136520	+		64768	23423	53396	53447	71295	71295					0.15727312595754483
YLFYFERW	8	Unmodified	_YLFYFERW_					0	0	0		ENST00000452385.5_1_3:48982572-49020700:+|nuORF;ENSG00000177479|ENST00000356401|ARIH2	ENST00000452385.5_1_3:48982572-49020700:+|nuORF	ENST00000452385.5_1_3:48982572-49020700:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	612.315673828125	2	612.297842	1222.58113	1.9987	0.0012238	-0.36158	-0.00022139	1.6371	0.0010024	612.7989928224277	129.24	0.23653	129.24	129.02	129.26	0					6	4	2	0	0	0	0.028476	1	14959	14959		31.955	0	1	26133			64769	7687	53397	53448	71296	71296					-0.021256666600720564
YLFYRTIAPY	10	Unmodified	_YLFYRTIAPY_					0	0	0		tr|A0A553SNE8|A0A553SNE8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24310PE=4SV=1	tr|A0A553SNE8|A0A553SNE8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24310PE=4SV=1	tr|A0A553SNE8|A0A553SNE8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_24310PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	436.21429443359375	3	436.23253	1305.67576	0.34331	0.00014976	-3.6456	-0.0015903	-3.3023	-0.0014406	436.2317713808498	39.247	0.39818	36.321	36.097	36.495	-2.9264					12	7	2	0	0	0	0.026739	1	1603	1603		53.089	19.167	1	7353.6			64770	33920	53398	53449	71297	71297					0.03514847091310003
YLGACARARAS	11	Unmodified	_YLGACARARAS_					0	0	0			REV__ENST00000458516.5_1_6:30294408-30294591:+|nuORF	REV__ENST00000458516.5_1_6:30294408-30294591:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	570.2898559570312	2	569.792932	1137.57131	-0.9559	-0.00054466	-4.4861	-0.0025561	-5.442	-0.0031008	569.7902502017694	146.03	1.5267	144.59	144.15	145.67	-1.4357					62	26	4	0	0	0	0.71498	1	14383	14383		24.519	2.8169	1	170700	+		64771	26057	53399	53450	71298	71298					0.008028220629057614
YLGDVSERV	9	Unmodified	_YLGDVSERV_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MSMS	OvCa99_classI_Rep5	1	519.2694091796875	2	519.266739	1036.51892	-0.16451	-8.5424E-05	0.46932	0.0002437	0.30481	0.00015828	519.2668706519751	73.774	0.57498	73.774	73.56	74.135	0					29	14	3	0	0	0	0.14855	1	7262	7262		85.161	24.189	1	1916300			64772	3523	53400	53451	71299	71299					0.002125622009543804
YLGDVSERV	9	Unmodified	_YLGDVSERV_					0	0	0		ENSG00000122218|ENST00000241704|COPA;nc|ENSG00000122218|P53621-2|COPA	ENSG00000122218|ENST00000241704|COPA	ENSG00000122218|ENST00000241704|COPA	MULTI-MATCH	OvCa9_classI_Rep3	3		2	519.266739	1036.51892	-0.32688	-0.00016974	0.53159	0.00027604	0.20471	0.0001063	519.266833040823	75.848	0.50598	73.477	73.267	73.773	-2.3715	-0.14871	5.6761E-05	NaN	85.161	12	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12942			64773	3523	53400	53451							0.002125622009543804
YLGGSSALFTD	11	Unmodified	_YLGGSSALFTD_					0	0	0			REV__ENSG00000081248|ENST00000362061|CACNA1S	REV__ENSG00000081248|ENST00000362061|CACNA1S	MULTI-MSMS	OvCa99_classI_Rep5	1	565.7706909179688	2	565.771854	1129.52915	1.0921	0.0006179	-2.5407	-0.0014375	-1.4486	-0.00081957	565.769104952001	158.21	1.4829	158.21	157.75	159.24	0					82	30	5	0	0	0	0.65947	1	18561	18561		39.253	2.2244	1	233690	+		64774	17069	53401	53452	71300	71300					-0.030428748644681036
YLGLVHGVE	9	Unmodified	_YLGLVHGVE_					0	0	0			REV__nc|ENSG00000116183|Q9BXP8-2|PAPPA2	REV__nc|ENSG00000116183|Q9BXP8-2|PAPPA2	MULTI-MSMS	OvCa9_classI_Rep2	2	493.7674255371094	2	493.768917	985.523281	-0.045305	-2.237E-05	-4.2036	-0.0020756	-4.2489	-0.002098	493.76664163531694	39.733	0.84529	37.024	36.755	37.601	-2.7097					35	16	3	0	0	0	0.59983	1	1968	1968		31.955	0.42505	1	83635	+		64775	18289	53402	53453	71301	71301					0.029940714145254788
YLGLVHGVE	9	Unmodified	_YLGLVHGVE_					0	0	0			REV__nc|ENSG00000116183|Q9BXP8-2|PAPPA2	REV__nc|ENSG00000116183|Q9BXP8-2|PAPPA2	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	493.768917	985.523281	-0.045305	-2.237E-05	-4.2036	-0.0020756	-4.2489	-0.002098	493.76664163531694	39.733	0.84529	37.024	36.755	37.601	-2.7097	0.19409	6.4536E-05	NaN	31.955	35	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	83635	+		64776	18289	53402	53453							0.029940714145254788
YLGLVHGVE	9	Unmodified	_YLGLVHGVE_					0	0	0			REV__nc|ENSG00000116183|Q9BXP8-2|PAPPA2	REV__nc|ENSG00000116183|Q9BXP8-2|PAPPA2	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	493.768917	985.523281	-0.03809	-1.8808E-05	-4.5919	-0.0022673	-4.63	-0.0022861	493.7664843077019	39.562	0.69458	36.635	36.395	37.09	-2.9264	-0.19409	-0.00031896	NaN	31.955	19	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	12591	+		64777	18289	53402	53453							0.029940714145254788
YLGPHIASV	9	Unmodified	_YLGPHIASV_					0	0	0		ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	MULTI-MSMS	OvCa99_classI_Rep5	1	478.7646484375	2	478.763635	955.512717	2.2083	0.0010572	0.1846	8.8378E-05	2.3929	0.0011456	478.7635878685432	83.971	0.80132	83.971	83.671	84.472	0					38	18	3	0	0	0	0.073432	2	8744	8744;8747		105.27	37.905	1	1807400			64778	1279	53403	53454	71302;71303	71302					0.03318088760090632
YLGPHIASV	9	Unmodified	_YLGPHIASV_					0	0	0		ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	ENSG00000062716|ENST00000262291|VMP1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	478.763635	955.512717	-1.8717	-0.00089609	1.8626	0.00089175	-0.0090636	-4.3393E-06	478.7642328331867	85.227	1.1362	83.737	83.307	84.444	-1.4906	-0.11715	0.0010646	NaN	105.27	38	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	53438			64779	1279	53403	53454							0.03318088760090632
YLGQVAILL	9	Unmodified	_YLGQVAILL_					0	0	0		ENST00000552316.1_1_12:120935833-120936010:+|nuORF;ENSG00000264364|ENST00000579991|DYNLL2;ENSG00000088986|ENST00000242577|DYNLL1	ENST00000552316.1_1_12:120935833-120936010:+|nuORF	ENST00000552316.1_1_12:120935833-120936010:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	495.3074035644531	2	495.305136	988.595718	1.0061	0.0004983	-1.0891	-0.00053941	-0.083004	-4.1112E-05	495.3044382673932	150.27	1.2022	150.27	149.94	151.15	0					42	23	2	0	0	0	0.17908	1	17585	17585		79.939	8.5613	1	274920			64780	1801	53404	53455	71304	71304					0.10096405488093296
YLGTVPSHPKG	11	Unmodified	_YLGTVPSHPKG_					0	0	0			REV__nc|ENSG00000085511|Q9Y6R4-2|MAP3K4	REV__nc|ENSG00000085511|Q9Y6R4-2|MAP3K4	MULTI-MSMS	OvCa9_classI_Rep2	2	578.31005859375	2	578.31148	1154.60841	-3.4092	-0.0019716	1.3378	0.00077367	-2.0714	-0.0011979	578.3120607814013	148.81	1.2534	148.59	148.22	149.47	-0.22697					59	24	4	0	0	0	0.72473	1	15042	15042		19.104	0	1	94207	+		64781	17135	53405	53456	71305	71305					0.037288168803115695
YLGVFYLGIL	10	Unmodified	_YLGVFYLGIL_					0	0	0			REV__ENSG00000121797|ENST00000399036|CCRL2	REV__ENSG00000121797|ENST00000399036|CCRL2	MULTI-MSMS	OvCa99_classI_Rep5	1	579.3339233398438	2	579.333893	1156.65323	1.6824	0.00097467	-3.0654	-0.0017759	-1.3831	-0.00080125	579.3319867548784	98.706	1.5764	98.706	97.912	99.488	0					101	37	4	0	0	0	0.49566	1	10820	10820		54.765	5.3231	1	12142000	+		64782	18558	53406	53457	71306	71306					0.08117247693644458
YLHATAYQN	9	Unmodified	_YLHATAYQN_					0	0	0		ENST00000443722.5_1_7:102939135-102952660:+|nuORF;ENST00000498530.5_1_7:102937906-102949569:+|nuORF;ENST00000453466.1_1_7:102939135-102952715:+|nuORF;ENST00000444457.5_1_7:102938385-102969496:+|nuORF;ENSG00000105819|ENST00000249269|PMPCB	ENST00000443722.5_1_7:102939135-102952660:+|nuORF	ENST00000443722.5_1_7:102939135-102952660:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.7608642578125	2	540.759081	1079.50361	-0.72426	-0.00039165	3.824	0.0020679	3.0997	0.0016762	540.7610106815363	102.48	0.84274	100.28	99.832	100.67	-2.1994					34	15	3	0	0	0	0.59259	1	9233	9233		32.812	0.85756	1	119150			64783	2504	53407	53458	71307	71307					-0.032963045962333126
YLHATAYQN	9	Unmodified	_YLHATAYQN_					0	0	0		ENST00000443722.5_1_7:102939135-102952660:+|nuORF;ENST00000498530.5_1_7:102937906-102949569:+|nuORF;ENST00000453466.1_1_7:102939135-102952715:+|nuORF;ENST00000444457.5_1_7:102938385-102969496:+|nuORF;ENSG00000105819|ENST00000249269|PMPCB	ENST00000443722.5_1_7:102939135-102952660:+|nuORF	ENST00000443722.5_1_7:102939135-102952660:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	540.759081	1079.50361	-1.7446	-0.00094342	4.5918	0.002483	2.8471	0.0015396	540.7612731578126	101.36	1.3879	100.59	99.377	100.77	-0.76401	0.21101	0.00088227	NaN	32.812	35	27	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33388			64784	2504	53407	53458							-0.032963045962333126
YLHATAYQN	9	Unmodified	_YLHATAYQN_					0	0	0		ENST00000443722.5_1_7:102939135-102952660:+|nuORF;ENST00000498530.5_1_7:102937906-102949569:+|nuORF;ENST00000453466.1_1_7:102939135-102952715:+|nuORF;ENST00000444457.5_1_7:102938385-102969496:+|nuORF;ENSG00000105819|ENST00000249269|PMPCB	ENST00000443722.5_1_7:102939135-102952660:+|nuORF	ENST00000443722.5_1_7:102939135-102952660:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	540.759081	1079.50361	-0.27719	-0.00014989	3.4833	0.0018836	3.2061	0.0017337	540.7607544889178	101.8	1.3104	100.28	99.531	100.84	-1.5211	-0.10636	-0.00031654	NaN	32.812	42	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	117030			64785	2504	53407	53458							-0.032963045962333126
YLHIQMHLV	9	Unmodified	_YLHIQMHLV_					0	0	0		nc|ENSG00000091490|Q68CR1-3|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3	nc|ENSG00000091490|Q68CR1-3|SEL1L3	nc|ENSG00000091490|Q68CR1-3|SEL1L3	MULTI-MSMS	OvCa99_classI_Rep5	1	577.3150024414062	2	577.312969	1152.61138	1.9941	0.0011512	0.68363	0.00039467	2.6777	0.0015459	577.3133577376428	95.081	0.4649	95.081	94.819	95.284	0					18	10	2	0	0	0	0.17908	1	10376	10376		79.939	28.747	1	625550			64786	1871	53408	53459	71308	71308					0.041183687334751085
YLHLDVMT	8	Unmodified	_YLHLDVMT_					0	0	0		tr|A0A7D6VN02|A0A7D6VN02_9CLOTDihydroxy-aciddehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_15615PE=3SV=1;tr|A0A7D7AEQ8|A0A7D7AEQ8_9CLOTDihydroxy-aciddehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_03400PE=3SV=1	tr|A0A7D6VN02|A0A7D6VN02_9CLOTDihydroxy-aciddehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_15615PE=3SV=1	tr|A0A7D6VN02|A0A7D6VN02_9CLOTDihydroxy-aciddehydrataseOS=ClostridiumintestinaleOX=36845GN=HZF06_15615PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	496.24957275390625	2	496.249503	990.484453	1.4711	0.00073004	-3.1217	-0.0015492	-1.6506	-0.00081911	496.24784144412973	127.3	0.94511	127.3	127.05	128	0					55	20	3	0	0	0	0.69415	1	14724	14724		44.531	0.41427	1	863030			64787	34673	53409	53460	71309	71309					-0.011169772115067644
YLHLLECE	8	Unmodified	_YLHLLECE_					0	0	0			REV__tr|A0A7D7A0W6|A0A7D7A0W6_9CLOTNAD(P)H-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12895PE=4SV=1	REV__tr|A0A7D7A0W6|A0A7D7A0W6_9CLOTNAD(P)H-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_12895PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	510.2466125488281	2	510.24696	1018.47937	1.6589	0.00084645	-3.2636	-0.0016652	-1.6047	-0.00081877	510.2451662979428	127.25	2.2553	127.25	127.01	129.26	0					121	48	4	0	0	0	0.35894	1	14740	14740		96.048	0	1	5144900	+		64788	32460	53410	53461	71310	71310					-0.029132810741202775
YLHSINSL	8	Unmodified	_YLHSINSL_					0	0	0		PTCHD1|p.Q216H|1|0.05|ENSG00000165186|chrX:23379887-23379887|G/C|missense_variant	PTCHD1|p.Q216H|1|0.05|ENSG00000165186|chrX:23379887-23379887|G/C|missense_variant	PTCHD1|p.Q216H|1|0.05|ENSG00000165186|chrX:23379887-23379887|G/C|missense_variant	MSMS	OvCa99_classI_Rep5	1	473.7555236816406	2	473.753267	945.491981	NaN	NaN	NaN	NaN	NaN	NaN	NaN	70.503	1	70.503	70.003	71.003	0								0	0	0	0.30129	1	6764	6764		47.916	0	1				64789	15528	53411	53462	71311	71311					0.01705498380431436
YLHSKNFSK	9	Unmodified	_YLHSKNFSK_					0	0	0		ENSG00000156469|ENST00000287025|MTERF3;nc|ENSG00000156469|Q96E29-3|MTERF3;nc|ENSG00000156469|Q96E29-2|MTERF3	ENSG00000156469|ENST00000287025|MTERF3	ENSG00000156469|ENST00000287025|MTERF3	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.7761840820312	2	562.298373	1122.58219	0.47667	0.00026803	-1.8737	-0.0010536	-1.397	-0.00078555	562.2978610119164	69.163	0.86946	69.163	68.606	69.475	0					39	20	3	0	0	0	0.027462	1	6517	6517		39.253	0	1	456110			64790	5840	53412	53463	71312	71312					0.025805477088624684
YLHSQVVSV	9	Unmodified	_YLHSQVVSV_					0	0	0		nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	MULTI-MSMS	OvCa99_classI_Rep5	1	516.2811279296875	2	516.279649	1030.54475	0.17231	8.8959E-05	-0.37834	-0.00019533	-0.20603	-0.00010637	516.2793796358696	72.631	0.4678	72.631	72.374	72.842	0					37	11	4	0	0	0	0.091859	1	7081	7081		99.375	14.459	1	5894600			64791	8965	53413	53464	71313	71313					0.030694564432451443
YLHSQVVSV	9	Unmodified	_YLHSQVVSV_					0	0	0		nc|ENSG00000204267|Q03519-2|TAP2;ENSG00000204267|ENST00000374897|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	nc|ENSG00000204267|Q03519-2|TAP2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	516.279649	1030.54475	-0.3556	-0.00018359	-0.46146	-0.00023824	-0.81706	-0.00042183	516.2790065534994	74.497	0.98834	72.526	72.062	73.05	-1.9711	-0.052515	-7.9279E-05	NaN	99.375	33	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49664			64792	8965	53413	53464							0.030694564432451443
YLHTVRIPN	9	Unmodified	_YLHTVRIPN_					0	0	0			REV__nc|ENSG00000009694|Q9UKZ4-2|TENM1	REV__nc|ENSG00000009694|Q9UKZ4-2|TENM1	MULTI-MSMS	OvCa99_classI_Rep5	1	556.81494140625	2	556.81419	1111.61383	2.2935	0.0012771	3.9455	0.0021969	6.2391	0.003474	556.8162566808654	83.899	1.8131	83.899	82.736	84.55	0					81	42	4	0	0	0	0.62352	1	8774	8774		29.15	1.2673	1	2482700	+		64793	16466	53414	53465	71314	71314					0.06248540462820529
YLHVAALELL	10	Unmodified	_YLHVAALELL_					0	0	0			REV__nc|ENSG00000158792|Q8IUW3-2|SPATA2L	REV__nc|ENSG00000158792|Q8IUW3-2|SPATA2L	MULTI-MSMS	OvCa9_classI_Rep2	2	571.3326416015625	2	571.334424	1140.6543	-1.5942	-0.00091083	-2.0821	-0.0011896	-3.6763	-0.0021004	571.333039561483	116.37	1.1872	116.24	115.92	117.11	-0.12869					58	23	4	0	0	0	0.43592	1	11130	11130		63.306	8.5839	1	187230	+		64794	20582	53415	53466	71315	71315					0.08959462062557577
YLICGALIHPS	11	Unmodified	_YLICGALIHPS_					0	0	0			REV__nc|ENSG00000100099|Q9NQG7-4|HPS4	REV__nc|ENSG00000100099|Q9NQG7-4|HPS4	MSMS	OvCa99_classI_Rep5	1	593.8206787109375	2	593.818084	1185.62162	NaN	NaN	NaN	NaN	NaN	NaN	NaN	107.86	1	107.86	107.36	108.36	0								0	0	0	0.19402	1	12180	12180		34.173	3.6689	1		+		64795	17365	53416	53467	71316	71316					0.03622931668064666
YLICGVSWLD	10	Unmodified	_YLICGVSWLD_					0	0	0			REV__STK36|p.E760Sfs*19|1|0.2|ENSG00000163482|chr2:218693919-218693934|TCTACTGAAGTGACAC/-|frameshift_variant	REV__STK36|p.E760Sfs*19|1|0.2|ENSG00000163482|chr2:218693919-218693934|TCTACTGAAGTGACAC/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	584.30419921875	2	584.788992	1167.56343	-2.2441	-0.0013123	3.6645	0.002143	1.4204	0.00083064	584.7908072256245	87.136	0.66512	84.959	84.834	85.499	-2.1768					17	12	2	0	0	0	0.026871	1	5251	5251		10.265	0	1	103990	+		64796	20841	53417	53468	71317	71317					-0.01364749977210522
YLIDTLLNS	9	Unmodified	_YLIDTLLNS_					0	0	0			REV__tr|A0A553SGG8|A0A553SGG8_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_10850PE=3SV=1	REV__tr|A0A553SGG8|A0A553SGG8_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_10850PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.3223266601562	2	526.28714	1050.55973	-1.1788	-0.00062037	1.0911	0.00057424	-0.087648	-4.6128E-05	526.2877235005573	99.302	0.98021	96.977	96.588	97.568	-2.3253					25	18	2	0	0	0	0.027462	1	8814	8814		19.997	0	1	146840	+		64797	29698	53418	53469	71318	71318					0.03646903520575506
YLIEPDVEL	9	Unmodified	_YLIEPDVEL_					0	0	0		nc|ENSG00000114098|Q8IUR7-6|ARMC8;nc|ENSG00000114098|Q8IUR7-3|ARMC8;nc|ENSG00000114098|Q8IUR7-7|ARMC8;nc|ENSG00000114098|Q8IUR7-2|ARMC8;ENSG00000114098|ENST00000469044|ARMC8;ENST00000486832.1_1_3:137958292-137964088:+|nuORF;ENST00000460495.5_1_3:137956301-138014731:+|nuORF	nc|ENSG00000114098|Q8IUR7-6|ARMC8	nc|ENSG00000114098|Q8IUR7-6|ARMC8	MULTI-MSMS	OvCa99_classI_Rep5	1	545.788818359375	2	545.786973	1089.55939	2.0881	0.0011397	-0.96904	-0.00052889	1.1191	0.0006108	545.7864961424133	137.21	1.3812	137.21	136.49	137.87	0					55	28	3	0	0	0	0.22961	1	16014	16014		71.296	11.177	1	306940			64798	3011	53419	53470	71319	71319					0.01819483800704802
YLIGSSVIR	9	Unmodified	_YLIGSSVIR_					0	0	0		TNS3-PKD1L1|1|fusion;nc|ENSG00000158683|Q8TDX9-2|PKD1L1;ENSG00000158683|ENST00000289672|PKD1L1	TNS3-PKD1L1|1|fusion	TNS3-PKD1L1|1|fusion	MULTI-MSMS	OvCa9_classI_Rep2	2	504.2958984375	2	504.297842	1006.58113	-0.51106	-0.00025773	-2.5251	-0.0012734	-3.0362	-0.0015312	504.2965168618611	31.671	1.532	28.961	28.69	30.222	-2.7097					81	30	4	0	0	0	0.48324	1	1019	1019		44.117	4.864	1	812760			64799	32973	53420	53471	71320	71320					0.07810333339944009
YLIIHVLLL	9	Unmodified	_YLIIHVLLL_					0	0	0		ENST00000348564.10_2_1:198676009-198676063:+|nuORF	ENST00000348564.10_2_1:198676009-198676063:+|nuORF	ENST00000348564.10_2_1:198676009-198676063:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.30419921875	2	548.860078	1095.7056	1.5385	0.00084442	-3.3678	-0.0018484	-1.8293	-0.001004	548.8580555637983	138.14	0.59373	138.14	137.91	138.5	0					21	12	2	0	0	0	0.027462	1	16099	16099		8.8223	2.5097	1	77464			64800	10639	53421	53472	71321	71321					0.16157830827296493
YLIKGVEI	8	Unmodified	_YLIKGVEI_					0	0	0		ENST00000583894.1_1_17:62499293-62499524:-|nuORF;ENST00000581551.1_1_17:62499042-62499524:-|nuORF	ENST00000583894.1_1_17:62499293-62499524:-|nuORF	ENST00000583894.1_1_17:62499293-62499524:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	467.78668212890625	2	467.784036	933.553519	-0.064173	-3.0019E-05	2.7699	0.0012957	2.7058	0.0012657	467.7851445624072	101.69	0.38371	101.69	101.53	101.91	0					14	8	2	0	0	0	0.60331	1	11324	11324		63.306	5.495	1	172150			64801	13998	53422	53473	71322	71322					0.08408430079703066
YLIKVSRDKI	10	Unmodified	_YLIKVSRDKI_					0	0	0		ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	ENSG00000119041|ENST00000263956|GTF3C3	MULTI-SECPEP	OvCa9_classI_Rep3	3	412.2314147949219	3	412.255446	1233.74451	1.9567	0.00080665	-4.265	-0.0017583	-2.3084	-0.00095163	412.2544465647405	65.95	0.30603	63.004	62.806	63.112	-2.9459					6	5	2	0	0	0	0.027035	1	2681	2681		36.318	14.632	1	5284.8			64802	3339	53423	53474	71323	71323					0.1369851139097591
YLILMGVFIVL	11	Oxidation (M)	_YLILM(Oxidation (M))GVFIVL_		YLILM(1)GVFIVL		YLILM(41)GVFIVL	0	0	1			REV__tr|A0A7D6W098|A0A7D6W098_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_22550PE=4SV=1	REV__tr|A0A7D6W098|A0A7D6W098_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_22550PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	432.9260559082031	3	432.926049	1295.75632	1.6734	0.00072447	-0.79465	-0.00034402	0.87878	0.00038044	432.9256048538329	64.918	2.5849	61.925	61.446	64.031	-2.9933					130	50	4	0	0	0	0.63561	1	2581	2581		41.427	10.858	1	231790	+		64803	31852	53424	53475	71324	71324		706			0.12026992089954547
YLILMGVFIVL	11	Oxidation (M)	_YLILM(Oxidation (M))GVFIVL_					0	0	1			REV__tr|A0A7D6W098|A0A7D6W098_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_22550PE=4SV=1	REV__tr|A0A7D6W098|A0A7D6W098_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_22550PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		3	432.926049	1295.75632	0.35071	0.00015183	0.61498	0.00026624	0.96569	0.00041807	432.9261630348376	65.305	1.7953	61.819	61.407	63.202	-3.4854	-0.052846	0.0015401	NaN	41.427	73	36	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	123230	+		64804	31852	53424	53475				706			0.12026992089954547
YLILPRLLN	9	Unmodified	_YLILPRLLN_					0	0	0		tr|A0A7D6W479|A0A7D6W479_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_15370PE=3SV=1	tr|A0A7D6W479|A0A7D6W479_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_15370PE=3SV=1	tr|A0A7D6W479|A0A7D6W479_9CLOTMultidrugexportproteinMepAOS=ClostridiumintestinaleOX=36845GN=HZF06_15370PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	557.8536987304688	2	557.852784	1113.69102	0.41955	0.00023405	2.2403	0.0012498	2.6599	0.0014838	557.8535764152882	114.53	0.82927	114.53	114.29	115.12	0					26	17	2	0	0	0	0.44294	1	13078	13078		47.916	7.1374	1	514150			64805	35472	53425	53476	71325	71325					0.13871758679147206
YLIMAGMISI	10	Unmodified	_YLIMAGMISI_					0	0	0		ENSG00000180245|ENST00000317735|RRH	ENSG00000180245|ENST00000317735|RRH	ENSG00000180245|ENST00000317735|RRH	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.8056640625	2	556.298139	1110.58172	0.76978	0.00042823	-2.1862	-0.0012162	-1.4164	-0.00078795	556.2966526456938	160.9	2.3694	160.9	159.86	162.23	0					95	46	3	0	0	0	0.026635	1	18999	18999		47.657	18.508	1	122560			64806	7863	53426	53477	71326	71326					0.030856686731340233
YLIMILCNT	9	Unmodified	_YLIMILCNT_					0	0	0			REV__ENST00000374994.8_2_9:101908888-101910004:+|nuORF	REV__ENST00000374994.8_2_9:101908888-101910004:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	541.8052978515625	2	542.282489	1082.55042	-1.3595	-0.00073726	1.6861	0.00091433	0.32653	0.00017707	542.2833598899695	80.461	0.53584	77.751	77.516	78.052	-2.7106					15	10	2	0	0	0	0.027462	1	6544	6544		29.15	10.825	1	45570	+		64807	25076	53427	53478	71327	71327					0.012450956390239298
YLINEIDRL	9	Unmodified	_YLINEIDRL_					0	0	0		tr|A0A7D6ZH35|A0A7D6ZH35_9CLOTMini-ribonuclease3OS=ClostridiumintestinaleOX=36845GN=mrnCPE=3SV=1	tr|A0A7D6ZH35|A0A7D6ZH35_9CLOTMini-ribonuclease3OS=ClostridiumintestinaleOX=36845GN=mrnCPE=3SV=1	tr|A0A7D6ZH35|A0A7D6ZH35_9CLOTMini-ribonuclease3OS=ClostridiumintestinaleOX=36845GN=mrnCPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	574.820068359375	2	574.819138	1147.62372	1.8634	0.0010711	-0.42052	-0.00024172	1.4429	0.00082941	574.8190362635986	110.74	1.6999	110.74	110.09	111.79	0					55	37	2	0	0	0	0.036986	2	12582	12560;12582		129.42	0	1	1825500			64808	35563	53428	53479	71328;71329	71329					0.055816836775193224
YLINKILEI	9	Unmodified	_YLINKILEI_					0	0	0			REV__tr|A0A7D6VNI6|A0A7D6VNI6_9CLOTRiboflavintransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_19055PE=3SV=1	REV__tr|A0A7D6VNI6|A0A7D6VNI6_9CLOTRiboflavintransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_19055PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	559.8186645507812	2	559.844625	1117.6747	2.657	0.0014875	-0.81756	-0.00045771	1.8394	0.0010298	559.8443123042769	137.54	0.33856	137.54	137.35	137.69	0					10	6	2	0	0	0	0.02741	1	16026	16026		71.296	2.5089	1	32707	+		64809	31184	53429	53480	71330	71330					0.12056632722374161
YLIPDIDLKL	10	Unmodified	_YLIPDIDLKL_					0	0	0		SCAP-SMARCC1|1|fusion;ENSG00000173473|ENST00000254480|SMARCC1;SMARCC1|p.K392Ifs*4|1|0.11|ENSG00000173473|chr3:47693291-47693292|-/A|frameshift_variant	SCAP-SMARCC1|1|fusion	SCAP-SMARCC1|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	601.8569946289062	2	601.855189	1201.69583	1.4684	0.00088377	0.61131	0.00036792	2.0797	0.0012517	601.8554478645528	143.92	1.0305	143.92	143.61	144.64	0					62	20	5	0	0	0	0.24425	2	16809	16809;16831		87.696	13.441	1	1034600			64810	7382	53430	53481	71331;71332	71331					0.10304598031234491
YLIPDMIKK	9	Unmodified	_YLIPDMIKK_					0	0	0		tr|A0A7D6VWJ8|A0A7D6VWJ8_9CLOTFMN-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08625PE=4SV=1	tr|A0A7D6VWJ8|A0A7D6VWJ8_9CLOTFMN-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08625PE=4SV=1	tr|A0A7D6VWJ8|A0A7D6VWJ8_9CLOTFMN-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08625PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.7724609375	2	560.825378	1119.6362	2.7835	0.0015611	-4.0191	-0.002254	-1.2356	-0.00069296	560.8229715626599	122.06	0.69574	122.06	121.66	122.36	0					28	14	3	0	0	0	0.027441	1	14051	14051		58.782	4.0056	1	141770			64811	35251	53431	53482	71333	71333					0.08117003816209944
YLIPLLERL	9	Unmodified	_YLIPLLERL_					0	0	0		ENSG00000110367|ENST00000534980|DDX6;DDX6|p.T310Yfs*16|1|0.04|ENSG00000110367|chr11:118758840-118758841|-/GACTTAAACTCTTTGCCACACTGTAC|frameshift_variant	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	OvCa99_classI_Rep5	1	565.3539428710938	2	565.352617	1128.69068	1.546	0.00087404	0.36325	0.00020536	1.9093	0.0010794	565.3527711373636	144.35	3.6923	144.35	143.76	147.45	0					246	75	7	0	0	0	0.075543	3	16867	16867;16891;16964		104.06	18.888	1	6070400			64812	2770	53432	53483	71334;71335;71336	71334					0.13148338959263128
YLIPLLERL	9	Unmodified	_YLIPLLERL_					0	0	0		ENSG00000110367|ENST00000534980|DDX6;DDX6|p.T310Yfs*16|1|0.04|ENSG00000110367|chr11:118758840-118758841|-/GACTTAAACTCTTTGCCACACTGTAC|frameshift_variant	ENSG00000110367|ENST00000534980|DDX6	ENSG00000110367|ENST00000534980|DDX6	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.3508911132812	2	565.352617	1128.69068	0.73066	0.00041308	-0.90199	-0.00050994	-0.17133	-9.6863E-05	565.3517344197305	143.54	0.987	142.1	141.84	142.83	-1.4427					38	18	3	0	0	0	0.50149	1	14095	14095		42.396	3.3746	1	38241			64813	2770	53432	53483	71337	71337					0.13148338959263128
YLIRQTPDL	9	Unmodified	_YLIRQTPDL_					0	0	0			REV__ENSG00000278129|ENST00000621650|ZNF8	REV__ENSG00000278129|ENST00000621650|ZNF8	MULTI-MSMS	OvCa9_classI_Rep4_	4	559.8154296875	2	559.813856	1117.61316	3.9956	0.0022368	-0.65346	-0.00036581	3.3422	0.001871	559.813249709843	134.7	2.6126	133.16	132.47	135.08	-1.5437					137	52	4	0	0	0	0.42676	1	13113	13113		49.442	1.7842	1	191680	+		64814	23638	53433	53484	71338	71338					0.05905701023084475
YLIRSELL	8	Unmodified	_YLIRSELL_					0	0	0			REV__ENSG00000112818|ENST00000230588|MEP1A	REV__ENSG00000112818|ENST00000230588|MEP1A	MULTI-MSMS	OvCa99_classI_Rep5	1	503.8017578125	2	503.800217	1005.58588	-0.040998	-2.0655E-05	-0.63839	-0.00032162	-0.67939	-0.00034228	503.79985316809575	56.898	0.56205	56.898	56.702	57.264	0					23	12	3	0	0	0	0.56195	1	4760	4760		71.296	4.8664	1	863950	+		64815	18120	53434	53485	71339	71339					0.08331217482702868
YLISLCLFP	9	Unmodified	_YLISLCLFP_					0	0	0			REV__nc|ENSG00000102539|O43193-2|MLNR	REV__nc|ENSG00000102539|O43193-2|MLNR	MULTI-SECPEP	OvCa9_classI_Rep4_	4	535.778564453125	2	534.793546	1067.57254	-1.3706	-0.00073297	0.57044	0.00030507	-0.80012	-0.0004279	534.7937967292884	51.425	0.90434	48.251	47.972	48.877	-3.1734					43	17	3	0	0	0	0.027462	1	3020	3020		47.916	0	1	159320	+		64816	17560	53435	53486	71340	71340					0.041456433790926894
YLITERHEY	9	Unmodified	_YLITERHEY_					0	0	0			REV__tr|A0A553SRM2|A0A553SRM2_NIACIIron-containingalcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_01365PE=4SV=1	REV__tr|A0A553SRM2|A0A553SRM2_NIACIIron-containingalcoholdehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_01365PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	408.7315673828125	3	408.540022	1222.59824	0.30002	0.00012257	-3.4511	-0.0014099	-3.151	-0.0012873	408.53852369414165	51.056	1.2621	47.883	47.464	48.726	-3.1734					52	23	3	0	0	0	0.027462	1	2969	2969		34.173	17.006	1	81689	+		64817	30747	53436	53487	71341	71341					-0.004157908448860326
YLIWMLSN	8	Unmodified	_YLIWMLSN_					0	0	0			REV__nc|ENSG00000019186|Q07973-3|CYP24A1	REV__nc|ENSG00000019186|Q07973-3|CYP24A1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.8226928710938	2	520.267696	1038.52084	1.4479	0.00075329	-4.1827	-0.0021761	-2.7348	-0.0014228	520.2656216616173	137.85	1.4147	136.33	136.07	137.49	-1.5284					56	31	2	0	0	0	0.028476	1	13379	13379		45.952	11.779	1	36471	+		64818	16535	53437	53488	71342	71342					0.003118996852208511
YLIWMLSN	8	Unmodified	_YLIWMLSN_					0	0	0			REV__nc|ENSG00000019186|Q07973-3|CYP24A1	REV__nc|ENSG00000019186|Q07973-3|CYP24A1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	520.267696	1038.52084	-0.19964	-0.00010386	-2.4473	-0.0012732	-2.6469	-0.0013771	520.266424847791	137.13	0.87752	136.9	136.35	137.23	-0.22697	0.32033	0.00047174	NaN	45.952	31	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22765	+		64819	16535	53437	53488							0.003118996852208511
YLIWMLSN	8	Unmodified	_YLIWMLSN_					0	0	0			REV__nc|ENSG00000019186|Q07973-3|CYP24A1	REV__nc|ENSG00000019186|Q07973-3|CYP24A1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	520.267696	1038.52084	-1.1906	-0.00061946	-1.0987	-0.0005716	-2.2893	-0.0011911	520.2672939301376	137.61	1.1618	136.52	136.1	137.26	-1.0858	-0.062563	0.001875	NaN	45.952	32	23	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21733	+		64820	16535	53437	53488							0.003118996852208511
YLKANEVDL	9	Unmodified	_YLKANEVDL_					0	0	0			REV__ENST00000472587.5_1_21:43696971-43716499:+|nuORF	REV__ENST00000472587.5_1_21:43696971-43716499:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.7857055664062	2	532.784764	1063.55498	-1.4749	-0.00078581	0.23571	0.00012558	-1.2392	-0.00066023	532.7849453419013	74.07	3.1583	70.839	70.241	73.399	-3.2308					173	65	5	0	0	0	0.11471	1	5846	5846		93.195	16.421	1	6059100	+		64821	20642	53438	53489	71343	71343					0.025740193777892273
YLKASQYLL	9	Unmodified	_YLKASQYLL_					0	0	0			REV__tr|A0A7D6ZWE6|A0A7D6ZWE6_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=HZF06_07575PE=4SV=1	REV__tr|A0A7D6ZWE6|A0A7D6ZWE6_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=HZF06_07575PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	549.8123779296875	2	549.813325	1097.6121	1.0303	0.00056648	-0.98798	-0.0005432	0.042341	2.3279E-05	549.8125885922184	125.67	1.4812	125.43	125.11	126.59	-0.2359					60	29	3	0	0	0	0.55588	1	12259	12259		37.159	2.9866	1	84391	+		64822	32282	53439	53490	71344	71344					0.06719486654174034
YLKCIYFKWH	10	Unmodified	_YLKCIYFKWH_					0	0	0			REV__HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|37|1|sense	REV__HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|37|1|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	467.57958984375	3	467.577643	1399.7111	-0.62677	-0.00029306	4.4023	0.0020584	3.7756	0.0017654	467.5796080671253	37.553	0.46009	37.553	37.391	37.851	0					25	9	3	0	0	0	0.66944	1	2072	2072		33.922	8.0299	1	620400	+		64823	28281	53440	53491	71345	71345					0.027231863474298734
YLKCIYFKWH	10	Unmodified	_YLKCIYFKWH_					0	0	0			REV__HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|37|1|sense	REV__HERVK14-int_dup255|chr11:73939531-73943269:-|1.4488852815763655|0.2858411187947689|2.34|427.0|37|1|sense	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	467.577643	1399.7111	-0.62677	-0.00029306	4.4023	0.0020584	3.7756	0.0017654	467.5796080671253	37.553	0.46009	37.553	37.391	37.851	0	0	0	NaN	33.922	25	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	620400	+		64824	28281	53440	53491							0.027231863474298734
YLKDEIEEL	9	Unmodified	_YLKDEIEEL_					0	0	0		ENSG00000149639|ENST00000237536|SOGA1	ENSG00000149639|ENST00000237536|SOGA1	ENSG00000149639|ENST00000237536|SOGA1	MULTI-MSMS	OvCa99_classI_Rep5	1	576.2967529296875	2	576.295162	1150.57577	2.1558	0.0012424	0.78692	0.0004535	2.9428	0.0016959	576.2956021755398	94.924	0.59578	94.924	94.648	95.244	0					36	13	4	0	0	0	0.27001	1	10357	10357		66.429	0	1	1545200			64825	5483	53441	53492	71346	71346					0.006505649668270053
YLKDFFSNV	9	Unmodified	_YLKDFFSNV_					0	0	0		nc|ENSG00000107201|O95786-2|RIGI;ENSG00000107201|ENST00000379883|RIGI	nc|ENSG00000107201|O95786-2|RIGI	nc|ENSG00000107201|O95786-2|RIGI	MSMS	OvCa99_classI_Rep5	1	566.7879028320312	2	566.787307	1131.56006	NaN	NaN	NaN	NaN	NaN	NaN	NaN	113.02	1	113.02	112.52	113.52	0								0	0	0	0.16679	1	12877	12877		60.118	12.203	1				64826	2596	53442	53493	71347	71347					-0.0004567675957787287
YLKDLIEEV	9	Unmodified	_YLKDLIEEV_					0	0	0		ENSG00000128272|ENST00000674920|ATF4	ENSG00000128272|ENST00000674920|ATF4	ENSG00000128272|ENST00000674920|ATF4	MULTI-MSMS	OvCa99_classI_Rep5	1	561.30908203125	2	561.308072	1120.60159	2.3877	0.0013402	-0.11549	-6.4825E-05	2.2722	0.0012754	561.3078278468515	112.6	0.72185	112.6	112.2	112.92	0					44	15	4	0	0	0	0.094616	2	12829	12806;12829		98.629	7.9839	1	1108400			64827	3872	53443	53494	71348;71349	71349					0.046114592090816586
YLKEFRTEQ	9	Unmodified	_YLKEFRTEQ_					0	0	0		ENSG00000132478|ENST00000589666|UNK;UNK|p.L382Pfs*48|1|0.06|ENSG00000132478|chr17:75817366-75817366|T/-|frameshift_variant;ENST00000503648.1_1_16:1451355-1464692:-|nuORF;nc|ENSG00000059145|Q9H9P5-5|UNKL;nc|ENSG00000059145|Q9H9P5|UNKL;ENSG00000059145|ENST00000389221|UNKL;nc|ENSG00000059145|Q9H9P5-6|UNKL	ENSG00000132478|ENST00000589666|UNK	ENSG00000132478|ENST00000589666|UNK	MULTI-SECPEP	OvCa9_classI_Rep4_	4	607.354248046875	2	607.31422	1212.61389	-0.50604	-0.00030733	-1.5758	-0.00095702	-2.0819	-0.0012643	607.3123705836011	45.294	0.93817	42.255	41.971	42.909	-3.0385					31	17	2	0	0	0	0.027462	1	2371	2371		45.972	8.1607	1	51072			64828	4141	53444	53495	71350	71350					0.01608495672121535
YLKFHLKRIRE	11	Unmodified	_YLKFHLKRIRE_					0	0	0		ENSG00000145555|ENST00000513610|MYO10;nc|ENSG00000145555|Q9HD67-3|MYO10	ENSG00000145555|ENST00000513610|MYO10	ENSG00000145555|ENST00000513610|MYO10	MULTI-MSMS	OvCa9_classI_Rep3	3	501.6336669921875	3	501.636661	1501.88815	-7.1576	-0.0035905	1.9793	0.00099288	-5.1783	-0.0025976	501.63774554440306	163.54	2.3462	162.14	160.37	162.72	-1.3925					135	52	3	0	0	0	0.72542	2	14137	14137;14155		10.104	0.45776	1	91935			64829	5231	53445	53496	71351;71352	71351					0.15728358221917915
YLKGDREVL	9	Unmodified	_YLKGDREVL_					0	0	0			REV__ENSG00000133313|ENST00000324262|CNDP2	REV__ENSG00000133313|ENST00000324262|CNDP2	MULTI-MSMS	OvCa9_classI_Rep2	2	546.808837890625	2	546.806031	1091.59751	-0.99545	-0.00054432	4.3713	0.0023902	3.3758	0.0018459	546.8082578719798	116.77	2.0318	116.64	116.42	118.45	-0.12868					100	40	4	0	0	0	0.28934	1	11215	11215		64.207	14.766	1	305590	+		64830	19140	53446	53497	71353	71353					0.05537414506034111
YLKKKCIV	8	Unmodified	_YLKKKCIV_					0	0	0		tr|A0A7D6W0L6|A0A7D6W0L6_9CLOTDUF1887familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00270PE=4SV=1	tr|A0A7D6W0L6|A0A7D6W0L6_9CLOTDUF1887familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00270PE=4SV=1	tr|A0A7D6W0L6|A0A7D6W0L6_9CLOTDUF1887familyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_00270PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	497.7596130371094	2	497.809531	993.604509	-0.4435	-0.00022078	3.6297	0.0018069	3.1862	0.0015861	497.81118778696595	65.283	0.96856	61.797	61.504	62.472	-3.4854					39	19	3	0	0	0	0.028476	1	4707	4707		42.474	23.114	1	97580			64831	35380	53447	53498	71354	71354					0.1074505585291945
YLKKLHTQ	8	Unmodified	_YLKKLHTQ_					0	0	0		ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	ENSG00000126461|ENST00000360565|SCAF1	MULTI-MSMS	OvCa9_classI_Rep2	2	515.8060913085938	2	515.805834	1029.59712	-0.17166	-8.8541E-05	0.15324	7.904E-05	-0.018421	-9.5016E-06	515.8057522410776	136.15	1.0273	135.92	135.57	136.6	-0.22696					51	20	4	0	0	0	0.75661	1	13553	13553		19.36	1.0356	1	147900			64832	3783	53448	53499	71355	71355					0.08350039576839663
YLKLAGTIIN	10	Unmodified	_YLKLAGTIIN_					0	0	0			REV__nc|ENSG00000106069|P52757-5|CHN2	REV__nc|ENSG00000106069|P52757-5|CHN2	MULTI-MSMS	OvCa9_classI_Rep3	3	553.3310546875	2	553.334424	1104.6543	-5.4992	-0.0030429	1.7092	0.00094578	-3.7899	-0.0020971	553.3351787520976	152.55	1.4112	151.58	151.19	152.61	-0.97301					72	28	4	0	0	0	0.81208	1	13096	13096		17.468	1.8262	1	153020	+		64833	17777	53449	53500	71356	71356					0.10615462062582992
YLKLENVTH	9	Unmodified	_YLKLENVTH_					0	0	0		ENST00000585431.2_1_19:16022160-16022415:-|nuORF	ENST00000585431.2_1_19:16022160-16022415:-|nuORF	ENST00000585431.2_1_19:16022160-16022415:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.8294677734375	2	558.806031	1115.59751	-0.44228	-0.00024715	-4.335	-0.0024224	-4.7773	-0.0026696	558.8036379296302	44.266	0.44795	44.266	44.08	44.528	0					14	9	2	0	0	0	0.027462	1	3005	3005		55.504	0	1	210880			64834	14031	53450	53501	71357	71357					0.04433414506047484
YLKLLKIGR	9	Unmodified	_YLKLLKIGR_					0	0	0			REV__nc|ENSG00000006071|Q09428-2|ABCC8	REV__nc|ENSG00000006071|Q09428-2|ABCC8	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.3032836914062	2	552.368601	1102.72265	-0.25226	-0.00013934	-1.9065	-0.0010531	-2.1587	-0.0011924	552.3674993254483	103.16	0.15666	100.96	100.83	100.99	-2.1994					4	2	2	0	0	0	0.027462	1	9302	9302		16.473	0.83134	1	7402.9	+		64835	16409	53451	53502	71358	71358					0.1753975143308253
YLKLLTRAE	9	Unmodified	_YLKLLTRAE_					0	0	0			REV__ENSG00000099957|ENST00000413302|P2RX6	REV__ENSG00000099957|ENST00000413302|P2RX6	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8297119140625	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.67509	1	11688	11688		23.042	2.0956	1	308210	+		64836	17344	53452	53503	71359	71359					0.10094577919812764
YLKLNNNLI	9	Unmodified	_YLKLNNNLI_					0	0	0			REV__tr|A0A7D6ZPD7|A0A7D6ZPD7_9CLOTSGNHhydrolase-typeesterasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19775PE=4SV=1	REV__tr|A0A7D6ZPD7|A0A7D6ZPD7_9CLOTSGNHhydrolase-typeesterasedomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19775PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	552.3031005859375	2	552.824224	1103.63389	-0.27171	-0.00015021	-3.2374	-0.0017897	-3.5091	-0.0019399	552.8220364475566	103.27	0.26	101.07	100.94	101.2	-2.1994					8	4	2	0	0	0	0.027462	1	9314	9314		40.573	7.057	1	15930	+		64837	32133	53453	53504	71360	71360					0.08622291402753035
YLKLNYLK	8	Unmodified	_YLKLNYLK_					0	0	0		Tigger1_dup11946|chr22:15828868-15829349:-|2.0143775268303656|0.126984307270513|3.99|417.0|27|3|anti-sense	Tigger1_dup11946|chr22:15828868-15829349:-|2.0143775268303656|0.126984307270513|3.99|417.0|27|3|anti-sense	Tigger1_dup11946|chr22:15828868-15829349:-|2.0143775268303656|0.126984307270513|3.99|417.0|27|3|anti-sense	MULTI-MSMS	OvCa9_classI_Rep4_	4	527.8170166015625	2	527.81841	1053.62227	2.908	0.0015349	-3.3438	-0.0017649	-0.43577	-0.00023001	527.8164130855859	133.06	2.3118	131.53	131.12	133.43	-1.5238					88	45	3	0	0	0	0.73626	1	12798	12798		33.516	0	1	542020			64838	32953	53454	53505	71361	71361					0.09760094379407747
YLKNVITVR	9	Unmodified	_YLKNVITVR_					0	0	0			REV__L1MA2_dup458|chr1:227783992-227784718:-|1.1741422800325727|0.4119820528890241|1.51|429.0|9|1|sense	REV__L1MA2_dup458|chr1:227783992-227784718:-|1.1741422800325727|0.4119820528890241|1.51|429.0|9|1|sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.29541015625	2	553.340041	1104.66553	1.5558	0.00086087	3.3167	0.0018353	4.8725	0.0026962	553.3415592163543	148.37	0.44319	148.37	148.18	148.62	0					11	8	2	0	0	0	0.027462	1	17374	17374		19.104	0	1	22398	+		64839	28379	53455	53506	71362	71362					0.11738284156695045
YLKRQALDL	9	Unmodified	_YLKRQALDL_					0	0	0			REV__ENSG00000159915|ENST00000683810|ZNF233	REV__ENSG00000159915|ENST00000683810|ZNF233	MULTI-MSMS	OvCa99_classI_Rep5	1	560.3287353515625	2	560.329673	1118.64479	2.7113	0.0015192	-2.2854	-0.0012806	0.42595	0.00023867	560.3293901112767	110.58	0.93267	110.58	110.22	111.16	0					47	20	3	0	0	0	0.29717	1	12546	12546		63.306	0	1	686710	+		64840	20632	53456	53507	71363	71363					0.09021693777026485
YLKRRREIH	9	Unmodified	_YLKRRREIH_					0	0	0			REV__ENSG00000160007|ENST00000672722|ARHGAP35	REV__ENSG00000160007|ENST00000672722|ARHGAP35	MULTI-MSMS	OvCa99_classI_Rep5	1	424.5870056152344	3	424.254551	1269.74182	0.12218	5.1836E-05	-3.1209	-0.001324	-2.9987	-0.0012722	424.2531579983493	22.506	0.45595	22.506	22.333	22.789	0					27	9	4	0	0	0	0.71234	1	240	240		9.7057	0	1	307390	+		64841	20634	53457	53508	71364	71364					0.11774100776688101
YLKRTKLYL	9	Unmodified	_YLKRTKLYL_					0	0	0			REV__tr|A0A553ST26|A0A553ST26_NIACIEnergycouplingfactortransporterScomponentThiWOS=NialliacirculansOX=1397GN=thiWPE=4SV=1	REV__tr|A0A553ST26|A0A553ST26_NIACIEnergycouplingfactortransporterScomponentThiWOS=NialliacirculansOX=1397GN=thiWPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	599.7513427734375	2	599.371341	1196.72813	1.6463	0.00098675	2.2556	0.001352	3.9019	0.0023387	599.3723623180437	138.54	0.52809	138.54	138.21	138.74	0					16	10	2	0	0	0	0.027447	1	16134	16134		56.721	8.8055	1	54413	+		64842	30907	53458	53509	71365	71365					0.13763430224889817
YLKRTKLYL	9	Unmodified	_YLKRTKLYL_					0	0	0			REV__tr|A0A553ST26|A0A553ST26_NIACIEnergycouplingfactortransporterScomponentThiWOS=NialliacirculansOX=1397GN=thiWPE=4SV=1	REV__tr|A0A553ST26|A0A553ST26_NIACIEnergycouplingfactortransporterScomponentThiWOS=NialliacirculansOX=1397GN=thiWPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	600.2979736328125	2	599.371341	1196.72813	0.71649	0.00042945	-4.2398	-0.0025412	-3.5233	-0.0021118	599.3688080421313	65.767	0.74847	63.071	62.62	63.368	-2.6958					20	14	2	0	0	0	0.027462	1	5094	5094		45.972	28.607	1	15551	+		64843	30907	53458	53509	71366	71366					0.13763430224889817
YLKVANKR	8	Unmodified	_YLKVANKR_					0	0	0			REV__tr|A0A553SUR3|A0A553SUR3_NIACITransketolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_06015PE=4SV=1	REV__tr|A0A553SUR3|A0A553SUR3_NIACITransketolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_06015PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	497.2861633300781	2	496.306001	990.597449	1.7034	0.00084539	-0.1744	-8.6558E-05	1.529	0.00075883	496.30615041939194	77.998	0.37317	77.998	77.801	78.174	0					17	8	3	0	0	0	0.028476	1	7895	7895		35.201	26.378	1	262300	+		64844	31113	53459	53510	71367	71367					0.10177459296698999
YLKVKGNVFKN	11	Unmodified	_YLKVKGNVFKN_					0	0	0		ENSG00000108298|ENST00000225430|RPL19;ENST00000498753.1_1_3:141762467-141763034:-|nuORF;ENST00000472309.1_1_4:179208113-179208287:+|nuORF;ENST00000429272.1_1_2:131051524-131051887:+|nuORF;ENST00000418154.1_1_1:64254543-64254969:-|nuORF	ENSG00000108298|ENST00000225430|RPL19	ENSG00000108298|ENST00000225430|RPL19	MULTI-MSMS	OvCa9_classI_Rep3	3	437.25628662109375	3	437.259079	1308.75541	-5.2708	-0.0023047	1.7866	0.0007812	-3.4842	-0.0015235	437.2600785847716	155.33	1.4057	154.26	153.21	154.61	-1.073					75	32	3	0	0	0	0.71582	1	13279	13279		24.232	5.7008	1	37963			64845	2643	53460	53511	71368	71368					0.11337913765282792
YLKVRPDEI	9	Unmodified	_YLKVRPDEI_					0	0	0		nc|ENSG00000108312|P17480-2|UBTF	nc|ENSG00000108312|P17480-2|UBTF	nc|ENSG00000108312|P17480-2|UBTF	MSMS	OvCa99_classI_Rep5	1	566.8235473632812	2	566.821681	1131.62881	NaN	NaN	NaN	NaN	NaN	NaN	NaN	69.242	1	69.242	68.742	69.742	0								0	0	0	0.11106	1	6578	6578		69.628	9.5094	1				64846	14948	53461	53512	71369	71369					0.06825987540150891
YLKYKIKFMNE	11	Unmodified	_YLKYKIKFMNE_					0	0	0			REV__ENST00000379509.7_1_2:30865446-30865677:+|nuORF	REV__ENST00000379509.7_1_2:30865446-30865677:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	492.9367370605469	3	492.935496	1475.78466	-0.86416	-0.00042597	2.6321	0.0012975	1.7679	0.00087148	492.93677279257577	39.946	1.1259	39.946	39.669	40.795	0					72	24	5	0	0	0	0.70315	1	2407	2407		28.577	0.19296	1	4178700	+		64847	25157	53462	53513	71370	71370					0.06579689999261973
YLKYKRLLP	9	Unmodified	_YLKYKRLLP_					0	0	0			REV__tr|A0A553SH73|A0A553SH73_NIACIYdbS-likePHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12320PE=4SV=1	REV__tr|A0A553SH73|A0A553SH73_NIACIYdbS-likePHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_12320PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.341552734375	2	597.373884	1192.73321	1.1719	0.00070007	1.6346	0.00097648	2.8065	0.0016766	597.8776997919902	132.62	0.1916	132.62	132.51	132.7	0					5	3	2	0	0	0	0.027462	1	15412	15412		30.504	14.03	1	22421	+		64848	29779	53463	53514	71371	71371					0.14455734087528072
YLLAKVPPTK	10	Unmodified	_YLLAKVPPTK_					0	0	0			REV__ENSG00000159339|ENST00000375448|PADI4	REV__ENSG00000159339|ENST00000375448|PADI4	MULTI-MSMS	OvCa99_classI_Rep5	1	565.3534545898438	2	565.352617	1128.69068	1.546	0.00087404	0.36325	0.00020536	1.9093	0.0010794	565.3527711373636	144.35	3.6923	144.35	143.76	147.45	0					246	75	7	0	0	0	0.62299	1	17217	17217		39.253	5.0803	1	6070400	+		64849	20610	53464	53515	71372	71372					0.13148338959263128
YLLALTAS	8	Unmodified	_YLLALTAS_					0	0	0		ENSG00000257008|ENST00000582579|GPR142;nc|ENSG00000257008|Q7Z601|GPR142	ENSG00000257008|ENST00000582579|GPR142	ENSG00000257008|ENST00000582579|GPR142	MULTI-MSMS	OvCa9_classI_Rep3	3	426.24554443359375	2	426.247286	850.48002	-1.1759	-0.00050123	-1.8651	-0.00079498	-3.041	-0.0012962	426.2464135300909	139.12	1.5749	138.06	137.54	139.11	-1.0595					80	31	4	0	0	0	0.75661	1	11438	11438		19.36	4.6959	1	422340			64850	9468	53465	53516	71373	71373					0.048798816372254805
YLLCLLVL	8	Unmodified	_YLLCLLVL_					0	0	0		L1MC5_dup3481|chr4:19631159-19632103:+|1.0071503765471246|0.0011382453961836|9.79|425.0|70|3|anti-sense	L1MC5_dup3481|chr4:19631159-19632103:+|1.0071503765471246|0.0011382453961836|9.79|425.0|70|3|anti-sense	L1MC5_dup3481|chr4:19631159-19632103:+|1.0071503765471246|0.0011382453961836|9.79|425.0|70|3|anti-sense	MULTI-MSMS	OvCa99_classI_Rep5	1	475.7967834472656	2	475.293182	948.571812	1.2052	0.0005728	-1.43	-0.00067965	-0.2248	-0.00010685	475.2915587518552	154.98	1.6202	154.98	154.37	155.99	0					67	31	4	0	0	0	0.7363	1	18148	18148		33.493	0	1	116170			64851	14608	53466	53517	71374	71374					0.09546848730053625
YLLDLHSYL	9	Unmodified	_YLLDLHSYL_					0	0	0		nc|ENSG00000145495|O60337-6|MARCHF6;nc|ENSG00000145495|O60337-5|MARCHF6;ENSG00000145495|ENST00000274140|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	nc|ENSG00000145495|O60337-6|MARCHF6	MULTI-MSMS	OvCa99_classI_Rep5	1	568.8041381835938	2	568.802957	1135.59136	1.7948	0.0010209	0.042803	2.4346E-05	1.8376	0.0010452	568.8028966210496	133.51	1.2565	133.51	133.04	134.29	0					75	26	4	0	0	0	0.019428	1	15524	15524		147.69	21.879	1	2657000			64852	5228	53467	53518	71375	71375					0.028988962745188473
YLLDLLRLP	9	Unmodified	_YLLDLLRLP_					0	0	0		nc|ENSG00000157600|Q5U3C3-2|TMEM164;ENSG00000157600|ENST00000372068|TMEM164	nc|ENSG00000157600|Q5U3C3-2|TMEM164	nc|ENSG00000157600|Q5U3C3-2|TMEM164	MULTI-MSMS	OvCa99_classI_Rep5	1	558.35009765625	2	558.344792	1114.67503	1.8036	0.001007	0.37599	0.00020993	2.1796	0.001217	558.3449400908034	147.31	0.53867	147.31	147.06	147.6	0					19	10	2	0	0	0	0.33652	1	17228	17228		58.782	12.81	1	99449			64853	5903	53468	53519	71376	71376					0.12228052442242188
YLLDQHILI	9	Unmodified	_YLLDQHILI_					0	0	0		ENSG00000168918|ENST00000445964|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;nc|ENSG00000168918|Q92835-3|INPP5D	ENSG00000168918|ENST00000445964|INPP5D	ENSG00000168918|ENST00000445964|INPP5D	MULTI-MSMS	OvCa99_classI_Rep5	1	564.3275146484375	2	564.326599	1126.63865	2.1525	0.0012147	0.57892	0.0003267	2.7314	0.0015414	564.3267840234241	125.87	0.93658	125.87	125.57	126.51	0					42	19	3	0	0	0	0.14998	1	14548	14548		84.916	23.944	1	562090			64854	6956	53469	53520	71377	71377					0.08039175545536636
YLLDQHILI	9	Unmodified	_YLLDQHILI_					0	0	0		ENSG00000168918|ENST00000445964|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;nc|ENSG00000168918|Q92835-3|INPP5D	ENSG00000168918|ENST00000445964|INPP5D	ENSG00000168918|ENST00000445964|INPP5D	MULTI-MSMS	OvCa9_classI_Rep3	3	564.32568359375	2	564.326599	1126.63865	1.0797	0.00060932	0.038541	2.175E-05	1.1183	0.00063107	564.3265697197423	126.53	1.0453	125.46	125.18	126.22	-1.0715					38	19	3	0	0	0	0.21231	2	9883	9883;9890		74.255	22.92	1	75802			64855	6956	53469	53520	71378;71379	71378					0.08039175545536636
YLLDQHILI	9	Unmodified	_YLLDQHILI_					0	0	0		ENSG00000168918|ENST00000445964|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;nc|ENSG00000168918|Q92835-3|INPP5D	ENSG00000168918|ENST00000445964|INPP5D	ENSG00000168918|ENST00000445964|INPP5D	MULTI-MSMS	OvCa9_classI_Rep4_	4	564.3278198242188	2	564.326599	1126.63865	-0.55285	-0.00031199	1.1627	0.00065616	0.60988	0.00034417	564.3270524693943	126.79	0.9922	125.36	125.1	126.09	-1.4316					39	19	3	0	0	0	0.40667	1	12080	12080		51.335	0	1	76104			64856	6956	53469	53520	71380	71380					0.08039175545536636
YLLDQHILI	9	Unmodified	_YLLDQHILI_					0	0	0		ENSG00000168918|ENST00000445964|INPP5D;nc|ENSG00000168918|Q92835-2|INPP5D;nc|ENSG00000168918|Q92835-3|INPP5D	ENSG00000168918|ENST00000445964|INPP5D	ENSG00000168918|ENST00000445964|INPP5D	MULTI-MATCH	OvCa9_classI_Rep2	2		2	564.326599	1126.63865	0.76883	0.00043387	0.55258	0.00031184	1.3214	0.00074571	564.3265782097776	125.59	0.69347	125.35	125.16	125.85	-0.2359	-0.039768	-0.0001093	NaN	74.255	32	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	55523			64857	6956	53469	53520							0.08039175545536636
YLLEIYEDMDN	11	Unmodified	_YLLEIYEDMDN_					0	0	0			REV__nc|ENSG00000075945|Q92845-4|KIFAP3	REV__nc|ENSG00000075945|Q92845-4|KIFAP3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	472.2658386230469	3	473.211242	1416.6119	0.44364	0.00020994	2.5954	0.0012282	3.0391	0.0014381	473.21225314456524	103.06	0.62492	100.86	100.67	101.3	-2.1994					17	11	3	0	0	0	0.026068	1	9288	9288		16.53	0	1	12476	+		64858	16982	53470	53521	71381	71381					-0.07974345918637482
YLLEKSRVV	9	Unmodified	_YLLEKSRVV_					0	0	0		nc|ENSG00000128641|O43795-2|MYO1B;ENSG00000128641|ENST00000392318|MYO1B;nc|ENSG00000125414|Q9UKX2-2|MYH2;nc|ENSG00000197879|O00159-2|MYO1C;nc|ENSG00000197879|O00159-3|MYO1C;ENSG00000197879|ENST00000648651|MYO1C;ENSG00000128833|ENST00000261839|MYO5C;nc|ENSG00000128833|Q9NQX4-2|MYO5C;MYO5C|p.W521Sfs*6|1|0.26|ENSG00000128833|chr15:52251489-52251490|CC/-|frameshift_variant;ENST00000541028.5_1_15:52553308-52587917:-|nuORF;ENSG00000125414|ENST00000245503|MYH2;ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;nc|ENSG00000197535|Q9Y4I1|MYO5A;ENSG00000197535|ENST00000399233|MYO5A;ENST00000558902.5_1_15:52548900-52571163:-|nuORF	nc|ENSG00000128641|O43795-2|MYO1B;nc|ENSG00000197879|O00159-2|MYO1C;ENSG00000128833|ENST00000261839|MYO5C;ENSG00000125414|ENST00000245503|MYH2;ENSG00000167306|ENST00000285039|MYO5B;nc|ENSG00000197535|Q9Y4I1-2|MYO5A;ENST00000558902.5_1_15:52548900-52571163:-|nuORF	nc|ENSG00000197879|O00159-2|MYO1C	MULTI-MSMS	OvCa99_classI_Rep5	1	553.831298828125	2	553.832049	1105.64954	-1.0217	-0.00056583	-0.26794	-0.0001484	-1.2896	-0.00071423	553.8319042337024	65.812	0.43382	65.812	65.625	66.059	0					32	10	5	0	0	0	0.3249	1	6061	6061		60.118	0	1	1767600			64859	8756;3897;3907;6778;8720;3707;13707	53471	53522	71382	71382					0.10094577919812764
YLLGDAVPTV	10	Unmodified	_YLLGDAVPTV_					0	0	0		nc|ENSG00000184730|Q0VD83-3|APOBR;ENSG00000184730|ENST00000564831|APOBR	nc|ENSG00000184730|Q0VD83-3|APOBR	nc|ENSG00000184730|Q0VD83-3|APOBR	MULTI-MSMS	OvCa9_classI_Rep2	2	524.2875366210938	2	524.289682	1046.56481	0.32988	0.00017295	-3.2253	-0.001691	-2.8954	-0.001518	524.2878628443616	44.341	1.6949	41.631	41.303	42.998	-2.7097					85	33	4	0	0	0	0.71192	1	2519	2519		29.15	0	1	482610			64860	8186	53472	53523	71383	71383					0.043392073831682865
YLLGPLYSI	9	Unmodified	_YLLGPLYSI_					0	0	0			REV__ENSG00000170044|ENST00000466937|ZPLD1	REV__ENSG00000170044|ENST00000466937|ZPLD1	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.8206787109375	2	519.797143	1037.57973	1.1843	0.00061559	-2.5231	-0.0013115	-1.3388	-0.00069589	519.7956796903255	138.23	0.71046	138.23	137.93	138.64	0					29	14	3	0	0	0	0.027433	1	16164	16164		47.916	0	1	269570	+		64861	21511	53473	53524	71384	71384					0.06244699251192287
YLLGPVLHLPQ	11	Unmodified	_YLLGPVLHLPQ_					0	0	0		ENSG00000197487|ENST00000357330|GALP	ENSG00000197487|ENST00000357330|GALP	ENSG00000197487|ENST00000357330|GALP	MULTI-SECPEP	OvCa9_classI_Rep3	3	624.3739624023438	2	625.368798	1248.72304	-6.084	-0.0038047	0.65896	0.00041209	-5.425	-0.0033926	625.8710709319237	163.13	0.32642	161.74	161.53	161.85	-1.3925					10	6	2	0	0	0	0.026056	1	14223	14223		14.865	0	1	11974			64862	8717	53474	53525	71385	71385					0.10863126362278308
YLLHEIDI	8	Unmodified	_YLLHEIDI_					0	0	0			REV__ENSG00000196547.15,MAN2A2,chr15,+,I1.1,90902527,90902694|104|4.61|2|intron	REV__ENSG00000196547.15,MAN2A2,chr15,+,I1.1,90902527,90902694|104|4.61|2|intron	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.7690734863281	2	508.276575	1014.5386	-0.87914	-0.00044684	1.9468	0.00098951	1.0677	0.00054267	508.2755346836057	99.37	0.97101	97.044	96.795	97.766	-2.3253					41	18	3	0	0	0	0.028476	1	8892	8892		62.978	0	1	93159	+		64863	22842	53475	53526	71386	71386					0.03190938211707817
YLLHEIDI	8	Unmodified	_YLLHEIDI_					0	0	0			REV__ENSG00000196547.15,MAN2A2,chr15,+,I1.1,90902527,90902694|104|4.61|2|intron	REV__ENSG00000196547.15,MAN2A2,chr15,+,I1.1,90902527,90902694|104|4.61|2|intron	MULTI-MATCH	OvCa9_classI_Rep3	3		2	508.276575	1014.5386	-0.51905	-0.00026382	-2.4245	-0.0012323	-2.9436	-0.0014962	508.27515404906785	98.819	1.0283	97.134	96.801	97.829	-1.685	0.044653	-0.0010447	NaN	42.474	31	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122060	+		64864	22842	53475	53526							0.03190938211707817
YLLICSSP	8	Unmodified	_YLLICSSP_					0	0	0		ENST00000397728.7_1_21:47609640-47609970:-|nuORF	ENST00000397728.7_1_21:47609640-47609970:-|nuORF	ENST00000397728.7_1_21:47609640-47609970:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	447.76171875	2	448.233322	894.45209	3.2437	0.001454	1.5812	0.00070874	4.8249	0.0021627	448.23390850199155	41.452	1.3797	38.743	38.192	39.571	-2.7097					56	27	3	0	0	0	0.028476	1	2227	2227		57.453	8.0111	1	69131			64865	11353	53476	53527	71387	71387					0.0006423538549142904
YLLILRKLV	9	Unmodified	_YLLILRKLV_					0	0	0			REV__ENST00000472637.5_1_3:112724385-112732818:-|nuORF	REV__ENST00000472637.5_1_3:112724385-112732818:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	565.3543701171875	2	565.886627	1129.7587	1.53	0.00086583	1.7972	0.001017	3.3272	0.0018828	565.8871081708057	144.2	0.24844	144.2	144.01	144.26	0					6	4	2	0	0	0	0.027462	1	16844	16844		19.36	0	1	19100	+		64866	20858	53477	53528	71388	71388					0.19901208609917376
YLLINPAKGT	10	Unmodified	_YLLINPAKGT_					0	0	0			REV__ENSG00000159267|ENST00000674895|HLCS	REV__ENSG00000159267|ENST00000674895|HLCS	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3161010742188	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.72319	1	14135	14135		27.882	1.1893	1	202430	+		64867	20606	53478	53529	71389	71389					0.08222889028479585
YLLIPLLER	9	Unmodified	_YLLIPLLER_					0	0	0		nc|ENSG00000184313|Q68CQ1-2|MROH7;nc|ENSG00000184313|Q68CQ1-1|MROH7;nc|ENSG00000184313|Q68CQ1-9|MROH7;ENSG00000184313|ENST00000421030|MROH7	nc|ENSG00000184313|Q68CQ1-2|MROH7	nc|ENSG00000184313|Q68CQ1-2|MROH7	MULTI-MSMS	OvCa99_classI_Rep5	1	565.3505249023438	2	565.352617	1128.69068	1.546	0.00087404	0.36325	0.00020536	1.9093	0.0010794	565.3527711373636	144.35	3.6923	144.35	143.76	147.45	0					246	75	7	0	0	0	0.14998	1	16939	16939		84.916	0	1	6070400			64868	8145	53479	53530	71390	71390					0.13148338959263128
YLLIPLLER	9	Unmodified	_YLLIPLLER_					0	0	0		nc|ENSG00000184313|Q68CQ1-2|MROH7;nc|ENSG00000184313|Q68CQ1-1|MROH7;nc|ENSG00000184313|Q68CQ1-9|MROH7;ENSG00000184313|ENST00000421030|MROH7	nc|ENSG00000184313|Q68CQ1-2|MROH7	nc|ENSG00000184313|Q68CQ1-2|MROH7	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.3518676757812	2	565.352617	1128.69068	0.73066	0.00041308	-0.90199	-0.00050994	-0.17133	-9.6863E-05	565.3517344197305	143.54	0.987	142.1	141.84	142.83	-1.4427					38	18	3	0	0	0	0.38529	1	14077	14077		53.351	9.2347	1	38241			64869	8145	53479	53530	71391	71391					0.13148338959263128
YLLIPLLER	9	Unmodified	_YLLIPLLER_					0	0	0		nc|ENSG00000184313|Q68CQ1-2|MROH7;nc|ENSG00000184313|Q68CQ1-1|MROH7;nc|ENSG00000184313|Q68CQ1-9|MROH7;ENSG00000184313|ENST00000421030|MROH7	nc|ENSG00000184313|Q68CQ1-2|MROH7	nc|ENSG00000184313|Q68CQ1-2|MROH7	MULTI-MATCH	OvCa9_classI_Rep3	3		2	565.352617	1128.69068	-2.9583	-0.0016725	2.4701	0.0013965	-0.48817	-0.00027599	565.3538148251224	143.22	0.64299	142.23	141.99	142.64	-0.99028	0.066839	0.0031209	NaN	53.351	19	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	11120			64870	8145	53479	53530							0.13148338959263128
YLLKCKLSCC	10	Unmodified	_YLLKCKLSCC_					0	0	0			REV__nc|ENSG00000157077|O95405-3|ZFYVE9	REV__nc|ENSG00000157077|O95405-3|ZFYVE9	MULTI-MSMS	OvCa9_classI_Rep2	2	587.295166015625	2	587.295073	1172.57559	-1.7713	-0.0010403	1.6996	0.00099816	-0.07168	-4.2097E-05	587.2959419520926	118.58	1.9781	118.43	118.08	120.06	-0.14754					123	39	5	0	0	0	0.66721	1	11351	11351		34.173	2.2177	1	499840	+		64871	20510	53480	53531	71392	71392					-0.003791728300257091
YLLKIVDLL	9	Unmodified	_YLLKIVDLL_					0	0	0		tr|A0A553SFU1|A0A553SFU1_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09490PE=4SV=1	tr|A0A553SFU1|A0A553SFU1_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09490PE=4SV=1	tr|A0A553SFU1|A0A553SFU1_NIACISTASdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_09490PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.3197021484375	2	545.349543	1088.68453	-0.91085	-0.00049673	-2.5134	-0.0013707	-3.4243	-0.0018674	545.3483740477565	63.109	0.14505	59.634	59.529	59.674	-3.475					4	2	2	0	0	0	0.027462	1	4418	4418		37.159	19.794	1	12888			64872	33078	53481	53532	71393	71393					0.14373820727746534
YLLKLKFN	8	Unmodified	_YLLKLKFN_					0	0	0		ENSG00000143799|ENST00000366794|PARP1;ENST00000491816.1_1_1:226549163-226549875:-|nuORF;ENST00000490921.5_1_1:226549163-226553858:-|nuORF	ENSG00000143799|ENST00000366794|PARP1;ENST00000490921.5_1_1:226549163-226553858:-|nuORF	ENSG00000143799|ENST00000366794|PARP1	MSMS	OvCa99_classI_Rep5	1	519.822509765625	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	132.66	1	132.66	132.16	133.16	0								0	0	0	0.30129	1	15418	15418		35.201	0	1				64873	5096;12707	53482	53533	71394	71394					0.11004398242039315
YLLKLKVM	8	Unmodified	_YLLKLKVM_					0	0	0		ENSG00000080293|ENST00000019103|SCTR	ENSG00000080293|ENST00000019103|SCTR	ENSG00000080293|ENST00000019103|SCTR	MULTI-MSMS	OvCa9_classI_Rep4_	4	504.3197937011719	2	504.319731	1006.62491	-0.94063	-0.00047438	0.47491	0.00023951	-0.46571	-0.00023487	504.3198291935092	144.23	1.5675	142.79	142.43	143.99	-1.4357					72	29	4	0	0	0	0.74679	1	14177	14177		28.254	8.8943	1	140800			64874	1632	53483	53534	71395	71395					0.12186226512733356
YLLLFLVVG	9	Unmodified	_YLLLFLVVG_					0	0	0			REV__ENSG00000070915|ENST00000563236|SLC12A3	REV__ENSG00000070915|ENST00000563236|SLC12A3	MULTI-SECPEP	OvCa9_classI_Rep3	3	519.8209228515625	2	518.825704	1035.63685	-0.17127	-8.8859E-05	-3.7072	-0.0019234	-3.8784	-0.0020122	518.8237033212794	134.08	1.58	132.95	132.57	134.15	-1.1226					50	30	2	0	0	0	0.027462	1	10781	10781		29.842	0	1	91307	+		64875	16893	53484	53535	71396	71396					0.12046166527557034
YLLLGNPSF	9	Unmodified	_YLLLGNPSF_					0	0	0			REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	REV__ENST00000579014.5_1_18:6942080-7042306:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	511.75927734375	2	512.279118	1022.54368	-0.0047225	-2.4192E-06	-0.032856	-1.6832E-05	-0.037579	-1.9251E-05	512.2782138699139	73.646	0.35192	73.646	73.44	73.792	0					10	7	2	0	0	0	0.027462	1	7207	7207		33.516	0	1	116430	+		64876	17513	53485	53536	71397	71397					0.03331242074330021
YLLLTPVLN	9	Unmodified	_YLLLTPVLN_					0	0	0		OR51L1|p.P286T|1|0.77|ENSG00000176798|chr11:4999838-4999838|C/A|missense_variant	OR51L1|p.P286T|1|0.77|ENSG00000176798|chr11:4999838-4999838|C/A|missense_variant	OR51L1|p.P286T|1|0.77|ENSG00000176798|chr11:4999838-4999838|C/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep2	2	522.3368530273438	2	523.318243	1044.62193	0.25734	0.00013467	-1.1869	-0.00062115	-0.9296	-0.00048648	523.3174171502235	114.35	0.88804	114.23	114.01	114.9	-0.11777					28	17	2	0	0	0	0.027426	1	10878	10878		44.117	18.667	1	109180			64877	15461	53486	53537	71398	71398					0.10140674659578508
YLLLTPVLN	9	Unmodified	_YLLLTPVLN_					0	0	0		OR51L1|p.P286T|1|0.77|ENSG00000176798|chr11:4999838-4999838|C/A|missense_variant	OR51L1|p.P286T|1|0.77|ENSG00000176798|chr11:4999838-4999838|C/A|missense_variant	OR51L1|p.P286T|1|0.77|ENSG00000176798|chr11:4999838-4999838|C/A|missense_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	523.318243	1044.62193	-0.57007	-0.00029833	-2.1761	-0.0011388	-2.7461	-0.0014371	523.3174584955104	115.34	1.2333	114.29	113.95	115.18	-1.0494	0.013537	-0.00078568	NaN	44.117	46	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	97503			64878	15461	53486	53537							0.10140674659578508
YLLMFFFGLI	10	Unmodified	_YLLMFFFGLI_					0	0	0			REV__tr|A0A553SS60|A0A553SS60_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02400PE=4SV=1	REV__tr|A0A553SS60|A0A553SS60_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_02400PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	633.3064575195312	2	632.345946	1262.67734	1.1211	0.00070894	-2.9337	-0.0018551	-1.8126	-0.0011462	632.3451036721959	141.78	0.24892	141.78	141.59	141.83	0					6	4	2	0	0	0	0.027007	1	16542	16542		35.201	0	1	22188	+		64879	30806	53487	53538	71399	71399					0.056507648557044377
YLLNATEVL	9	Unmodified	_YLLNATEVL_					0	0	0			REV__tr|A0A553ST78|A0A553ST78_NIACIPucRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04375PE=3SV=1	REV__tr|A0A553ST78|A0A553ST78_NIACIPucRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_04375PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	518.2905883789062	2	518.289682	1034.56481	1.1904	0.00061697	1.4426	0.00074767	2.633	0.0013646	518.2904150524671	98.202	0.81371	98.202	97.912	98.725	0					38	18	3	0	0	0	0.27001	1	10806	10806		66.429	0	1	1074700	+		64880	30927	53488	53539	71400	71400					0.04891207383184337
YLLNKYLK	8	Unmodified	_YLLNKYLK_					0	0	0			REV__ENSG00000205707|ENST00000381356|ETFRF1	REV__ENSG00000205707|ENST00000381356|ETFRF1	MULTI-MSMS	OvCa9_classI_Rep2	2	527.818115234375	2	527.81841	1053.62227	0.15404	8.1304E-05	-0.13429	-7.0882E-05	0.019746	1.0422E-05	527.8180746611931	131.65	2.3091	131.42	131.15	133.46	-0.22696					124	46	4	0	0	0	0.73626	1	13038	13038		33.516	0	1	610490	+		64881	23225	53489	53540	71401	71401					0.09760094379407747
YLLNKYLK	8	Unmodified	_YLLNKYLK_					0	0	0			REV__ENSG00000205707|ENST00000381356|ETFRF1	REV__ENSG00000205707|ENST00000381356|ETFRF1	MULTI-MSMS	OvCa9_classI_Rep3	3	527.8175048828125	2	527.81841	1053.62227	-0.62231	-0.00032847	1.4033	0.00074071	0.78103	0.00041224	527.8186129379317	132.72	1.4756	131.6	131.24	132.71	-1.1249					60	29	3	0	0	0	0.66704	1	10619	10619		50.025	0	1	124870	+		64882	23225	53489	53540	71402	71402					0.09760094379407747
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5	nc|ENSG00000100201|Q92841-1|DDX17;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	519.8221435546875	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.07	1	133.07	132.57	133.57	0								0	0	0	0.0031799	1	15470	15470		152.83	51.622	1				64883	2023;721	53490	53541	71403	71403					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5	nc|ENSG00000100201|Q92841-1|DDX17;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	519.8223876953125	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.25	1	133.25	132.75	133.75	0								0	0	0	0.0031799	1	15494	15494		152.83	78.859	1				64884	2023;721	53490	53541	71404	71404					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5	nc|ENSG00000100201|Q92841-1|DDX17;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	519.8222045898438	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.43	1	133.43	132.93	133.93	0								0	0	0	0.0031799	1	15518	15518		152.83	81.456	1				64885	2023;721	53490	53541	71405	71405					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5	nc|ENSG00000100201|Q92841-1|DDX17;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	519.8220825195312	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.62	1	133.62	133.12	134.12	0								0	0	0	0.0031799	1	15542	15542		152.83	75.987	1				64886	2023;721	53490	53541	71406	71406					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5	nc|ENSG00000100201|Q92841-1|DDX17;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	519.822265625	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	133.81	1	133.81	133.31	134.31	0								0	0	0	0.018381	1	15566	15566		133.45	56.603	1				64887	2023;721	53490	53541	71407	71407					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5	nc|ENSG00000100201|Q92841-1|DDX17;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	519.8218994140625	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134	1	134	133.5	134.5	0								0	0	0	0.018381	1	15590	15590		133.45	50.162	1				64888	2023;721	53490	53541	71408	71408					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5	nc|ENSG00000100201|Q92841-1|DDX17;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	519.8215942382812	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.19	1	134.19	133.69	134.69	0								0	0	0	0.018381	1	15614	15614		133.45	42.673	1				64889	2023;721	53490	53541	71409	71409					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5	nc|ENSG00000100201|Q92841-1|DDX17;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	519.822265625	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.37	1	134.37	133.87	134.87	0								0	0	0	0.027795	1	15638	15638		116.12	47.637	1				64890	2023;721	53490	53541	71410	71410					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5	nc|ENSG00000100201|Q92841-1|DDX17;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	519.8229370117188	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	134.56	1	134.56	134.06	135.06	0								0	0	0	0.034725	1	15663	15663		85.909	24.937	1				64891	2023;721	53490	53541	71411	71411					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5	nc|ENSG00000100201|Q92841-1|DDX17;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	519.8228149414062	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.25	1	135.25	134.75	135.75	0								0	0	0	0.17074	1	15755	15755		49.211	6.7363	1				64892	2023;721	53490	53541	71412	71412					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5	nc|ENSG00000100201|Q92841-1|DDX17;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	519.8222045898438	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.46	1	135.46	134.96	135.96	0								0	0	0	0.027795	1	15781	15781		116.12	13.348	1				64893	2023;721	53490	53541	71413	71413					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5	nc|ENSG00000100201|Q92841-1|DDX17;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	519.8217163085938	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.64	1	135.64	135.14	136.14	0								0	0	0	0.024391	1	15804	15804		100.36	42.549	1				64894	2023;721	53490	53541	71414	71414					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5	nc|ENSG00000100201|Q92841-1|DDX17;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	519.8218383789062	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	135.83	1	135.83	135.33	136.33	0								0	0	0	0.089004	1	15829	15829		72.62	20.321	1				64895	2023;721	53490	53541	71415	71415					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5	nc|ENSG00000100201|Q92841-1|DDX17;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	519.8228149414062	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.02	1	136.02	135.52	136.52	0								0	0	0	0.16668	1	15853	15853		60.404	12.488	1				64896	2023;721	53490	53541	71416	71416					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5	nc|ENSG00000100201|Q92841-1|DDX17;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	MSMS	OvCa99_classI_Rep5	1	519.8226318359375	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	136.93	1	136.93	136.43	137.43	0								0	0	0	0.089004	1	15968	15968		72.62	12.326	1				64897	2023;721	53490	53541	71417	71417					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5	nc|ENSG00000100201|Q92841-1|DDX17;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	519.8202514648438	2	519.820953	1037.62735	0.81291	0.00042257	-1.3897	-0.00072242	-0.57684	-0.00029985	519.8202931620538	131.65	3.3919	131.42	130.9	134.29	-0.22696					243	68	6	0	0	0	0.015084	33	12969	12952;12957;12963;12969;12975;12981;12987;12994;13000;13006;13012;13018;13024;13030;13036;13042;13048;13054;13060;13066;13074;13079;13085;13091;13098;13105;13111;13117;13123;13129;13134;13140;13158		152.83	84.349	1	7851100			64898	2023;721	53490	53541	71418;71419;71420;71421;71422;71423;71424;71425;71426;71427;71428;71429;71430;71431;71432;71433;71434;71435;71436;71437;71438;71439;71440;71441;71442;71443;71444;71445;71446;71447;71448;71449;71450	71421					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5	nc|ENSG00000100201|Q92841-1|DDX17;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	519.8198852539062	2	519.820953	1037.62735	-0.033156	-1.7235E-05	-0.58886	-0.0003061	-0.62202	-0.00032334	519.8206593971257	132.68	7.0212	131.56	131.19	138.21	-1.1249					377	142	6	0	0	0	0.015084	33	10604	10598;10604;10610;10616;10622;10628;10634;10640;10646;10652;10659;10665;10671;10677;10683;10689;10695;10701;10707;10714;10720;10726;10732;10738;10751;10758;10763;10775;10787;10794;10818;10859;11040		152.83	92.43	1	7095700			64899	2023;721	53490	53541	71451;71452;71453;71454;71455;71456;71457;71458;71459;71460;71461;71462;71463;71464;71465;71466;71467;71468;71469;71470;71471;71472;71473;71474;71475;71476;71477;71478;71479;71480;71481;71482;71483	71452					0.11004398242016578
YLLPAIVHI	9	Unmodified	_YLLPAIVHI_					0	0	0		nc|ENSG00000100201|Q92841-1|DDX17;nc|ENSG00000100201|Q92841-3|DDX17;nc|ENSG00000100201|Q92841-2|DDX17;ENSG00000100201|ENST00000403230|DDX17;ENST00000432525.5_1_22:38886367-38903636:-|nuORF;ENST00000216019.11_1_22:38888049-38902242:-|nuORF;ENST00000581230.5_1_17:62498125-62502378:-|nuORF;ENST00000583894.1_1_17:62499542-62500133:-|nuORF;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant;ENSG00000108654|ENST00000225792|DDX5	nc|ENSG00000100201|Q92841-1|DDX17;DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	DDX5|p.D515Efs*65|1|0.81|ENSG00000108654|chr17:64500196-64500223|TCTTTTAAGCAGGCTAGAGTAACCTCTG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.8198852539062	2	519.820953	1037.62735	3.2355	0.0016819	-4.237	-0.0022025	-1.0015	-0.00052058	519.8189203176197	133.01	12.026	131.51	130.85	142.87	-1.5016					509	242	6	0	0	0	0.015084	21	12803	12791;12803;12815;12827;12839;12851;12863;12875;12887;12899;12912;12924;12936;12948;12985;13008;13020;13045;13075;13131;13701		152.83	81.456	1	11423000			64900	2023;721	53490	53541	71484;71485;71486;71487;71488;71489;71490;71491;71492;71493;71494;71495;71496;71497;71498;71499;71500;71501;71502;71503;71504	71485					0.11004398242016578
YLLPCLPLL	9	Unmodified	_YLLPCLPLL_					0	0	0			REV__ENST00000225777.7_1_17:76168333-76168627:+|nuORF	REV__ENST00000225777.7_1_17:76168333-76168627:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	522.33154296875	2	522.811739	1043.60893	0.37462	0.00019586	3.1438	0.0016436	3.5184	0.0018395	522.8130617056582	158.55	0.47025	158.55	158.32	158.79	0					16	9	3	0	0	0	0.027462	1	18563	18563		39.021	26.21	1	24124	+		64901	23764	53491	53542	71505	71505					0.08886520275837029
YLLPEEHPS	9	Unmodified	_YLLPEEHPS_					0	0	0		ENSG00000121440|ENST00000263666|PDZRN3;nc|ENSG00000121440|Q9UPQ7-3|PDZRN3	ENSG00000121440|ENST00000263666|PDZRN3	ENSG00000121440|ENST00000263666|PDZRN3	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.3027954101562	2	542.769114	1083.52368	2.1244	0.0011531	-0.21518	-0.00011679	1.9092	0.0010363	542.7690545150537	122.1	0.3703	122.1	121.9	122.27	0					12	7	2	0	0	0	0.027462	1	14055	14055		31.955	18.996	1	67699			64902	3484	53492	53543	71506	71506					-0.014745536562941197
YLLPKAPLL	9	Unmodified	_YLLPKAPLL_					0	0	0		nc|ENSG00000187605|O43151-2|TET3;ENSG00000187605|ENST00000409262|TET3	nc|ENSG00000187605|O43151-2|TET3	nc|ENSG00000187605|O43151-2|TET3	MULTI-MSMS	OvCa9_classI_Rep2	2	514.3289794921875	2	514.331153	1026.64775	-0.046085	-2.3703E-05	-3.2145	-0.0016533	-3.2606	-0.001677	514.3294478888197	122.68	0.79058	122.46	122.31	123.11	-0.21803					33	15	3	0	0	0	0.53957	1	11893	11893		38.806	1.647	1	46008			64903	8416	53493	53544	71507	71507					0.13549568901839848
YLLPKDIKL	9	Unmodified	_YLLPKDIKL_					0	0	0		ENSG00000122035|ENST00000241463|RASL11A	ENSG00000122035|ENST00000241463|RASL11A	ENSG00000122035|ENST00000241463|RASL11A	MULTI-MSMS	OvCa99_classI_Rep5	1	551.8488159179688	2	551.847167	1101.67978	1.9968	0.0011019	0.24639	0.00013597	2.2432	0.0012379	551.8471480158798	100.38	1.5007	100.38	100.11	101.61	0					61	35	2	0	0	0	0.060996	1	11118	11118		112.41	16.22	1	8669800			64904	3514	53494	53545	71508	71508					0.13300936584982992
YLLPKDIKL	9	Unmodified	_YLLPKDIKL_					0	0	0		ENSG00000122035|ENST00000241463|RASL11A	ENSG00000122035|ENST00000241463|RASL11A	ENSG00000122035|ENST00000241463|RASL11A	MULTI-MSMS	OvCa9_classI_Rep2	2	551.8470458984375	2	551.847167	1101.67978	-0.44699	-0.00024667	-0.34298	-0.00018927	-0.78997	-0.00043594	551.846875915961	101.03	1.4869	100.26	99.973	101.46	-0.764					59	29	3	0	0	0	0.025955	2	9258	9253;9258		139.97	43.78	1	343170			64905	3514	53494	53545	71509;71510	71510					0.13300936584982992
YLLPKDIKL	9	Unmodified	_YLLPKDIKL_					0	0	0		ENSG00000122035|ENST00000241463|RASL11A	ENSG00000122035|ENST00000241463|RASL11A	ENSG00000122035|ENST00000241463|RASL11A	MULTI-MSMS	OvCa9_classI_Rep3	3	551.8472900390625	2	551.847167	1101.67978	-1.1792	-0.00065073	0.85124	0.00046975	-0.32795	-0.00018098	551.8476297983528	101.97	0.99301	100.45	100.11	101.1	-1.5211					62	18	4	0	0	0	0.2422	1	6998	6998		69.628	0	1	380610			64906	3514	53494	53545	71511	71511					0.13300936584982992
YLLPKKRTL	9	Unmodified	_YLLPKKRTL_					0	0	0		ENST00000343666.5_1_9:140098762-140099170:-|nuORF	ENST00000343666.5_1_9:140098762-140099170:-|nuORF	ENST00000343666.5_1_9:140098762-140099170:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.3154296875	2	566.366059	1130.71756	0.063824	3.6148E-05	-0.031995	-1.8121E-05	0.031829	1.8027E-05	566.365935326131	71.263	0.43538	71.263	71.031	71.466	0					15	10	2	0	0	0	0.027455	1	6911	6911		42.396	0	1	239690			64907	10602	53495	53546	71512	71512					0.15743447570457647
YLLPLHLVA	9	Unmodified	_YLLPLHLVA_					0	0	0			REV__nc|ENSG00000133401|O15018-2|PDZD2	REV__nc|ENSG00000133401|O15018-2|PDZD2	MSMS	OvCa99_classI_Rep5	1	519.8217163085938	2	519.820953	1037.62735	NaN	NaN	NaN	NaN	NaN	NaN	NaN	137.31	1	137.31	136.81	137.81	0								0	0	0	0.16668	1	16016	16016		60.404	0	1		+		64908	19143	53496	53547	71513	71513					0.11004398242016578
YLLPLLVIL	9	Unmodified	_YLLPLLVIL_					0	0	0		ENSG00000119973|ENST00000239032|PRLHR	ENSG00000119973|ENST00000239032|PRLHR	ENSG00000119973|ENST00000239032|PRLHR	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.2718505859375	2	528.857004	1055.69945	1.4236	0.00075288	-4.2004	-0.0022214	-2.7768	-0.0014685	528.8547235769519	111.22	0.57828	111.22	110.89	111.47	0					17	12	2	0	0	0	0.027462	1	12622	12622		21.702	0	1	99629			64909	3410	53497	53548	71514	71514					0.17383312595734424
YLLPLRSLI	9	Unmodified	_YLLPLRSLI_					0	0	0			REV__ENST00000261497.8_1_17:20905216-20905390:-|nuORF	REV__ENST00000261497.8_1_17:20905216-20905390:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	544.3460083007812	2	544.347335	1086.68012	0.25522	0.00013893	-0.24647	-0.00013416	0.0087488	4.7624E-06	544.3470145971799	130.64	2.2153	129.51	128.62	130.84	-1.1249					69	44	3	0	0	0	0.44568	1	10367	10367		47.657	6.8792	1	117100	+		64910	23952	53498	53549	71515	71515					0.1402435630486707
YLLPMVEHS	9	Unmodified	_YLLPMVEHS_					0	0	0			REV__nc|ENSG00000135801|O75529-2|TAF5L	REV__nc|ENSG00000135801|O75529-2|TAF5L	MULTI-SECPEP	OvCa9_classI_Rep3	3	545.3038940429688	2	544.775885	1087.53722	-0.44025	-0.00023984	1.3673	0.0007449	0.92709	0.00050506	544.7764508236919	102.75	0.46841	101.23	100.89	101.36	-1.5211					11	8	2	0	0	0	0.027462	1	7046	7046		33.516	3.674	1	41497	+		64911	19323	53499	53550	71516	71516					-0.003050191486863696
YLLPYENLL	9	Unmodified	_YLLPYENLL_					0	0	0		ENSG00000030066|ENST00000378460|NUP160;nc|ENSG00000030066|Q12769|NUP160;nc|ENSG00000030066|Q12769-3|NUP160;NUP160|p.A767Dfs*11|1|0.06|ENSG00000030066|chr11:47808471-47808472|-/T|frameshift_variant	ENSG00000030066|ENST00000378460|NUP160	ENSG00000030066|ENST00000378460|NUP160	MULTI-MSMS	OvCa99_classI_Rep5	1	569.3139038085938	2	569.313158	1136.61176	0.75388	0.00042919	0.83536	0.00047558	1.5892	0.00090478	569.3135199303774	159.19	1.5143	159.19	158.84	160.35	0					75	30	4	0	0	0	0.091859	2	18650	18650;18674		99.375	25.4	1	845320			64912	1064	53500	53551	71517;71518	71517					0.04892066934326067
YLLQAGDESL	10	Unmodified	_YLLQAGDESL_					0	0	0			REV__ENSG00000055609|ENST00000262189|KMT2C	REV__ENSG00000055609|ENST00000262189|KMT2C	MULTI-MSMS	OvCa99_classI_Rep5	1	555.28369140625	2	554.779679	1107.5448	1.8588	0.0010312	-4.1763	-0.0023169	-2.3175	-0.0012857	554.7766750408421	125.73	1.8611	125.73	125.37	127.23	0					81	41	4	0	0	0	0.44431	1	14524	14524		62.107	0.41614	1	508960	+		64913	16712	53501	53552	71519	71519					-0.00466588347421748
YLLRLLTF	8	Unmodified	_YLLRLLTF_					0	0	0		nc|ENSG00000290691|A6NGW2|STRCP1;ENSG00000242866|ENST00000450892|STRC	nc|ENSG00000290691|A6NGW2|STRCP1	nc|ENSG00000290691|A6NGW2|STRCP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.7598876953125	2	519.820953	1037.62735	1.3007	0.00067614	-3.8448	-0.0019986	-2.5441	-0.0013225	519.8188780641685	117.13	0.60282	117.13	116.91	117.51	0					24	12	3	0	0	0	0.028476	1	13418	13418		44.531	28.889	1	228410			64914	9370	53502	53553	71520	71520					0.11004398242016578
YLLSRLPQI	9	Unmodified	_YLLSRLPQI_					0	0	0		nc|ENSG00000040487|Q6ZP29-2|SLC66A1;nc|ENSG00000040487|Q6ZP29-3|SLC66A1;ENSG00000040487|ENST00000375153|SLC66A1	nc|ENSG00000040487|Q6ZP29-2|SLC66A1	nc|ENSG00000040487|Q6ZP29-2|SLC66A1	MULTI-MSMS	OvCa9_classI_Rep3	3	551.831298828125	2	551.834591	1101.65463	-1.4468	-0.00079841	1.2828	0.00070792	-0.16398	-9.0489E-05	551.8352363148457	101.35	1.3104	99.741	99.446	100.76	-1.6053					67	24	4	0	0	0	0.21231	1	6914	6914		74.255	0	1	510450			64915	1112	53503	53554	71521	71521					0.10786881782428281
YLLTGFGI	8	Unmodified	_YLLTGFGI_					0	0	0			REV__tr|A0A553SUN3|A0A553SUN3_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_02215PE=3SV=1	REV__tr|A0A553SUN3|A0A553SUN3_NIACIDHA2familyeffluxMFStransporterpermeasesubunitOS=NialliacirculansOX=1397GN=CEQ21_02215PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	442.2506103515625	2	442.249829	882.485105	1.831	0.00080976	0.39617	0.00017521	2.2272	0.00098496	442.2498688875309	151.82	1.0378	151.82	151.45	152.49	0					34	21	2	0	0	0	0.73288	1	17759	17759		35.201	0	1	119930	+		64916	31100	53504	53555	71522	71522					0.03916185499861058
YLLVGLSRLQ	10	Unmodified	_YLLVGLSRLQ_					0	0	0		ENSG00000188011|ENST00000343216|RTP5	ENSG00000188011|ENST00000343216|RTP5	ENSG00000188011|ENST00000343216|RTP5	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.3126220703125	2	581.353148	1160.69174	1.5336	0.00089157	4.0446	0.0023513	5.5782	0.0032429	581.3551896020589	136.27	1.0908	136.27	135.88	136.97	0					31	22	2	0	0	0	0.026906	1	15936	15936		33.922	4.7516	1	60110			64917	8446	53505	53556	71523	71523					0.11782553328180256
YLLVGVNIF	9	Unmodified	_YLLVGVNIF_					0	0	0			REV__nc|ENSG00000183023|P32418-2|SLC8A1	REV__nc|ENSG00000183023|P32418-2|SLC8A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.8206787109375	2	519.305136	1036.59572	0.89224	0.00046335	-3.4909	-0.0018128	-2.5986	-0.0013495	519.3032303653563	138.65	0.62329	138.65	138.45	139.07	0					16	12	2	0	0	0	0.027456	1	16164	16164		44.531	5.7249	1	81761	+		64918	22334	53506	53557	71524	71524					0.07888405488074568
YLLVLAPLH	9	Unmodified	_YLLVLAPLH_					0	0	0			REV__ENST00000375859.3_1_9:91092620-91092770:+|nuORF	REV__ENST00000375859.3_1_9:91092620-91092770:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	519.8207397460938	2	519.820953	1037.62735	3.2355	0.0016819	-4.237	-0.0022025	-1.0015	-0.00052058	519.8189203176197	133.01	12.026	131.51	130.85	142.87	-1.5016					509	242	6	0	0	0	0.42921	3	13063	13063;13362;13379		49.211	1.993	1	11423000	+		64919	25092	53507	53558	71525;71526;71527	71525					0.11004398242016578
YLLWASIIT	9	Unmodified	_YLLWASIIT_					0	0	0			REV__tr|A0A553SSF9|A0A553SSF9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_03005PE=3SV=1	REV__tr|A0A553SSF9|A0A553SSF9_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_03005PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	539.31884765625	2	540.310418	1078.60628	-1.3926	-0.00075242	-1.919	-0.0010369	-3.3116	-0.0017893	540.8116767097232	99.56	0.54613	98.73	98.418	98.964	-0.83051					15	10	2	0	0	0	0.027456	1	9067	9067		38.806	7.2763	1	44449	+		64920	30836	53508	53559	71528	71528					0.07012388142516102
YLLWLDTL	8	Unmodified	_YLLWLDTL_					0	0	0		ENST00000400556.7_1_18:9588232-9588770:-|nuORF	ENST00000400556.7_1_18:9588232-9588770:-|nuORF	ENST00000400556.7_1_18:9588232-9588770:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	518.7879028320312	2	518.789318	1035.56408	0.3455	0.00017924	-1.4556	-0.00075515	-1.1101	-0.00057591	518.7886960694296	151.8	1.0014	151.8	151.4	152.4	0					43	20	3	0	0	0	0.52992	1	17776	17776		74.517	4.889	1	223380			64921	11410	53509	53560	71529	71529					0.047724127341325584
YLMALPDLS	9	Unmodified	_YLMALPDLS_					0	0	0			REV__nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	REV__nc|ENSG00000179981|Q6ZSZ6-2|TSHZ1	MSMS	OvCa99_classI_Rep5	1	511.7655029296875	2	511.764986	1021.51542	NaN	NaN	NaN	NaN	NaN	NaN	NaN	83.516	1	83.516	83.016	84.016	0								0	0	0	0.17121	1	8690	8690		47.916	5.4411	1		+		64922	22150	53510	53561	71530	71530					0.0055217610274667095
YLMEMVSF	8	Unmodified	_YLMEMVSF_					0	0	0		tr|A0A7D7A754|A0A7D7A754_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13785PE=4SV=1	tr|A0A7D7A754|A0A7D7A754_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13785PE=4SV=1	tr|A0A7D7A754|A0A7D7A754_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13785PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	510.2358093261719	2	510.232464	1018.45038	0.10814	5.5177E-05	3.8848	0.0019822	3.993	0.0020373	510.2342866257074	70.923	0.74374	70.923	70.722	71.466	0					36	18	4	0	0	0	0.60486	1	6823	6823		62.978	4.1965	1	2799400			64923	36203	53511	53562	71531	71531					-0.05811141694755406
YLMIKLFSL	9	Unmodified	_YLMIKLFSL_					0	0	0			REV__ENST00000368072.9_1_1:160248913-160249057:-|nuORF	REV__ENST00000368072.9_1_1:160248913-160249057:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	564.7886962890625	2	564.330296	1126.64604	-1.0529	-0.00059416	-3.9078	-0.0022053	-4.9607	-0.0027995	564.8284285013885	50.917	0.24803	48.123	48.024	48.272	-2.794					6	4	2	0	0	0	0.027455	1	3301	3301		51.335	20.832	1	7987.9	+		64924	24913	53512	53563	71532	71532					0.0877819182157964
YLMIKLFSL	9	Unmodified	_YLMIKLFSL_					0	0	0			REV__ENST00000368072.9_1_1:160248913-160249057:-|nuORF	REV__ENST00000368072.9_1_1:160248913-160249057:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	564.7886962890625	2	564.330296	1126.64604	-0.95115	-0.00053676	-0.018705	-1.0556E-05	-0.96986	-0.00054732	564.330152236113	50.462	0.74257	47.668	47.331	48.074	-2.794					23	14	2	0	0	0	0.027455	1	3301	3301		51.335	20.832	1	54518	+		64925	24913	53512	53563	71533	71533					0.0877819182157964
YLMRVEFKK	9	Unmodified	_YLMRVEFKK_					0	0	0		MYH13|p.Q1539Hfs*44|1|0.11|ENSG00000006788|chr17:10311142-10311143|-/G|frameshift_variant;ENSG00000006788|ENST00000252172|MYH13;MYH13|p.I840Sfs*5|1|0.23|ENSG00000006788|chr17:10328039-10328039|T/-|frameshift_variant	MYH13|p.Q1539Hfs*44|1|0.11|ENSG00000006788|chr17:10311142-10311143|-/G|frameshift_variant	MYH13|p.Q1539Hfs*44|1|0.11|ENSG00000006788|chr17:10311142-10311143|-/G|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.9158630371094	3	405.230243	1212.6689	1.3422	0.00054388	3.1421	0.0012733	4.4843	0.0018172	405.2315307205083	32.455	0.44579	32.455	32.254	32.7	0					20	8	3	0	0	0	0.027462	1	1420	1420		30.318	14.397	1	65149			64926	14848	53513	53564	71534	71534					0.0710721093905704
YLNAPRINN	9	Unmodified	_YLNAPRINN_					0	0	0			REV__ENSG00000175097|ENST00000311485|RAG2	REV__ENSG00000175097|ENST00000311485|RAG2	MULTI-SECPEP	OvCa99_classI_Rep5	1	537.3450317382812	2	537.788173	1073.56179	0.073939	3.9763E-05	3.7748	0.00203	3.8487	0.0020698	537.7901393137931	46.608	0.48307	46.608	46.326	46.809	0					17	10	2	0	0	0	0.027462	1	3298	3298		38.806	13.232	1	447340	+		64927	21869	53514	53565	71535	71535					0.027953770490285024
YLNKEIEEA	9	Unmodified	_YLNKEIEEA_					0	0	0		nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	MULTI-MSMS	OvCa99_classI_Rep5	1	554.7813110351562	2	554.779679	1107.5448	-0.19315	-0.00010716	0.15877	8.8082E-05	-0.034379	-1.9073E-05	554.779576437503	61.89	0.9174	61.89	61.704	62.621	0					47	21	4	0	0	0	0.033166	1	5473	5473		132.76	34.128	1	4905800			64928	1258	53515	53566	71536	71536					-0.00466588347421748
YLNKEIEEA	9	Unmodified	_YLNKEIEEA_					0	0	0		nc|ENSG00000060069|Q9Y5B0-4|CTDP1;ENSG00000060069|ENST00000613122|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	nc|ENSG00000060069|Q9Y5B0-4|CTDP1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	554.779679	1107.5448	0.00098719	5.4767E-07	3.5512	0.0019701	3.5522	0.0019707	554.7815759742736	65.363	0.57843	61.877	61.552	62.13	-3.4854	-0.0065435	0.0035666	NaN	132.76	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	37767			64929	1258	53515	53566							-0.00466588347421748
YLNKKYFF	8	Unmodified	_YLNKKYFF_					0	0	0		nc|ENSG00000132554|Q8NE09-3|RGS22;ENSG00000132554|ENST00000360863|RGS22	nc|ENSG00000132554|Q8NE09-3|RGS22	nc|ENSG00000132554|Q8NE09-3|RGS22	MULTI-MSMS	OvCa99_classI_Rep5	1	561.80419921875	2	561.80276	1121.59097	2.408	0.0013528	-0.54171	-0.00030433	1.8663	0.0010485	561.8021465677695	122.5	0.59268	122.5	122.27	122.86	0					27	12	3	0	0	0	0.69415	1	14127	14127		44.531	0.15388	1	230380			64930	4147	53516	53567	71537	71537					0.035035213453284086
YLNLALYAF	9	Unmodified	_YLNLALYAF_					0	0	0		tr|A0A7D6ZZF8|A0A7D6ZZF8_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20180PE=4SV=1	tr|A0A7D6ZZF8|A0A7D6ZZF8_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20180PE=4SV=1	tr|A0A7D6ZZF8|A0A7D6ZZF8_9CLOTCPBPfamilyintramembranemetalloproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_20180PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.2535400390625	2	544.294768	1086.57498	-1.1728	-0.00063836	-2.6476	-0.0014411	-3.8204	-0.0020794	544.2928872196046	109.11	0.92282	107.39	107.02	107.94	-1.7256					40	17	4	0	0	0	0.027462	1	9996	9996		42.474	14.592	1	66531			64931	35960	53517	53568	71538	71538					0.03515815108380593
YLNLLQILY	9	Unmodified	_YLNLLQILY_					0	0	0			REV__ENST00000490095.5_1_3:48956369-48999072:+|nuORF	REV__ENST00000490095.5_1_3:48956369-48999072:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	576.783447265625	2	576.8368	1151.65905	1.0781	0.00062187	-2.888	-0.0016659	-1.8099	-0.001044	577.3354441741628	109.79	0.63107	109.79	109.59	110.22	0					28	13	3	0	0	0	0.027417	1	12458	12458		76.847	12.639	1	331320	+		64932	26650	53518	53569	71539	71539					0.08928346205334492
YLNLLRPPT	9	Unmodified	_YLNLLRPPT_					0	0	0		ENST00000563623.5_1_16:2339371-2378589:-|nuORF	ENST00000563623.5_1_16:2339371-2378589:-|nuORF	ENST00000563623.5_1_16:2339371-2378589:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	544.7503051757812	2	543.818941	1085.62333	2.0793	0.0011307	-0.46255	-0.00025154	1.6167	0.0008792	543.8189841880642	100.39	0.37623	100.39	100.19	100.57	0					14	8	2	0	0	0	0.027455	1	11113	11113		51.335	12.083	1	125180			64933	13790	53519	53570	71540	71540					0.08394308748324875
YLNMYASICF	10	Oxidation (M)	_YLNM(Oxidation (M))YASICF_		YLNM(1)YASICF		YLNM(44)YASICF	0	0	1		ENSG00000078589|ENST00000171757|P2RY10	ENSG00000078589|ENST00000171757|P2RY10	ENSG00000078589|ENST00000171757|P2RY10	MULTI-MSMS	OvCa99_classI_Rep5	1	620.7747802734375	2	620.772485	1239.53042	0.79957	0.00049635	0.78602	0.00048794	1.5856	0.00098429	620.7732712441995	154.95	0.85617	154.95	154.52	155.38	0					32	16	3	0	0	0	0.58067	1	18157	18157		44.377	9.1765	1	109420			64934	1594	53520	53571	71541	71541		60			-0.07976700091580824
YLNNIIPRF	9	Unmodified	_YLNNIIPRF_					0	0	0		nc|ENSG00000196369|P0DMP2|SRGAP2B;ENSG00000196369|ENST00000641863|SRGAP2B;SRGAP2|p.D724Vfs*88|1|0.04|ENSG00000266028|chr1:206450460-206450460|A/-|frameshift_variant;ENSG00000266028|ENST00000573034|SRGAP2;ENSG00000171943|ENST00000367123|SRGAP2C	nc|ENSG00000196369|P0DMP2|SRGAP2B	nc|ENSG00000196369|P0DMP2|SRGAP2B	MULTI-SECPEP	OvCa99_classI_Rep5	1	575.794189453125	2	575.324391	1148.63423	1.6762	0.00096436	-2.2329	-0.0012847	-0.55672	-0.00032029	575.3231269013307	129.01	0.23331	129.01	128.88	129.12	0					7	4	2	0	0	0	0.027462	1	14947	14947		40.573	13.88	1	37531			64935	8598	53521	53572	71542	71542					0.06585711122625071
YLNSIYAKI	9	Unmodified	_YLNSIYAKI_					0	0	0		tr|A0A7D6VWB6|A0A7D6VWB6_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=bglXPE=3SV=1	tr|A0A7D6VWB6|A0A7D6VWB6_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=bglXPE=3SV=1	tr|A0A7D6VWB6|A0A7D6VWB6_9CLOTbeta-glucosidaseOS=ClostridiumintestinaleOX=36845GN=bglXPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	543.8095703125	2	542.8055	1083.59645	3.1522	0.001711	-3.4538	-0.0018747	-0.3016	-0.00016371	543.301493509275	102.47	0.59669	102.47	102.25	102.85	0					35	13	4	0	0	0	0.40818	1	11437	11437		51.193	1.1682	1	764790			64936	35245	53522	53573	71543	71543					0.05799200137130356
YLNSVLDPV	9	Unmodified	_YLNSVLDPV_					0	0	0		ENSG00000162881|ENST00000378661|OXER1	ENSG00000162881|ENST00000378661|OXER1	ENSG00000162881|ENST00000378661|OXER1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	510.3140869140625	2	510.274032	1018.53351	0.27538	0.00014052	-0.45735	-0.00023338	-0.18197	-9.2856E-05	510.27368661694476	114.96	0.96246	113.56	113.3	114.27	-1.3977					52	18	4	0	0	0	0.027462	1	10710	10710		35.618	25.434	1	62093			64937	6243	53523	53574	71544	71544					0.024986343491036678
YLNVALATVS	10	Unmodified	_YLNVALATVS_					0	0	0		PCDHGC5|p.I695N|1|0.15|ENSG00000240764|chr5:141491324-141491324|T/A|missense_variant	PCDHGC5|p.I695N|1|0.15|ENSG00000240764|chr5:141491324-141491324|T/A|missense_variant	PCDHGC5|p.I695N|1|0.15|ENSG00000240764|chr5:141491324-141491324|T/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.7822265625	2	525.795132	1049.57571	2.0473	0.0010765	-0.78274	-0.00041156	1.2646	0.0006649	525.7950042676669	86.11	0.35906	86.11	85.912	86.271	0					19	8	3	0	0	0	0.026714	1	9047	9047		60.118	17.722	1	1069200			64938	15481	53524	53575	71545	71545					0.05290609757457787
YLNVALATVS	10	Unmodified	_YLNVALATVS_					0	0	0		PCDHGC5|p.I695N|1|0.15|ENSG00000240764|chr5:141491324-141491324|T/A|missense_variant	PCDHGC5|p.I695N|1|0.15|ENSG00000240764|chr5:141491324-141491324|T/A|missense_variant	PCDHGC5|p.I695N|1|0.15|ENSG00000240764|chr5:141491324-141491324|T/A|missense_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	525.795132	1049.57571	1.3533	0.00071155	-4.0949	-0.0021531	-2.7416	-0.0014415	525.7933564064692	87.766	0.68851	86.335	85.791	86.48	-1.4311	0.13884	-0.0020351	NaN	42.864	18	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20355			64939	15481	53524	53575							0.05290609757457787
YLNVALATVS	10	Unmodified	_YLNVALATVS_					0	0	0		PCDHGC5|p.I695N|1|0.15|ENSG00000240764|chr5:141491324-141491324|T/A|missense_variant	PCDHGC5|p.I695N|1|0.15|ENSG00000240764|chr5:141491324-141491324|T/A|missense_variant	PCDHGC5|p.I695N|1|0.15|ENSG00000240764|chr5:141491324-141491324|T/A|missense_variant	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	525.795132	1049.57571	-1.7855	-0.00093879	-0.95177	-0.00050043	-2.7372	-0.0014392	525.7951815752465	88.747	0.64912	86.144	85.882	86.532	-2.6027	-0.052496	0.0012702	NaN	42.864	16	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26244			64940	15481	53524	53575							0.05290609757457787
YLNVTRVGW	9	Unmodified	_YLNVTRVGW_					0	0	0			REV__tr|A0A7D6ZTY4|A0A7D6ZTY4_9CLOTDUF348domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21975PE=4SV=1	REV__tr|A0A7D6ZTY4|A0A7D6ZTY4_9CLOTDUF348domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21975PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.31884765625	2	554.300916	1106.58728	2.3822	0.0013205	-0.98726	-0.00054724	1.395	0.00077322	554.3000262675625	113.2	0.66339	113.2	112.83	113.5	0					29	15	3	0	0	0	0.027462	1	12871	12871		34.173	9.6534	1	328780	+		64941	32211	53525	53576	71546	71546					0.038248515714712994
YLPAFNRCFA	10	Unmodified	_YLPAFNRCFA_					0	0	0			REV__tr|A0A553SIJ6|A0A553SIJ6_NIACIPhzFfamilyphenazinebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_14980PE=4SV=1	REV__tr|A0A553SIJ6|A0A553SIJ6_NIACIPhzFfamilyphenazinebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_14980PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	400.5348815917969	3	401.198943	1200.575	2.1352	0.00085665	-1.49	-0.00059777	0.64529	0.00025889	401.5331462805966	71.549	0.73232	69.042	68.858	69.59	-2.5071					16	13	2	0	0	0	0.027193	1	5767	5767		22.58	11.483	1	20213	+		64942	29899	53526	53577	71547	71547					-0.01726508163210383
YLPAFNRCFA	10	Unmodified	_YLPAFNRCFA_					0	0	0			REV__tr|A0A553SIJ6|A0A553SIJ6_NIACIPhzFfamilyphenazinebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_14980PE=4SV=1	REV__tr|A0A553SIJ6|A0A553SIJ6_NIACIPhzFfamilyphenazinebiosynthesisproteinOS=NialliacirculansOX=1397GN=CEQ21_14980PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		3	401.198943	1200.575	1.3561	0.00054405	0.48904	0.0001962	1.8451	0.00074025	401.53341197418206	71.588	0.4977	68.986	68.782	69.28	-2.6023	-0.0282	0.0011654	NaN	11.636	18	9	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23589	+		64943	29899	53526	53577							-0.01726508163210383
YLPAKKGDIP	10	Unmodified	_YLPAKKGDIP_					0	0	0		ENST00000442114.6_2_6:43971070-43971394:+|nuORF	ENST00000442114.6_2_6:43971070-43971394:+|nuORF	ENST00000442114.6_2_6:43971070-43971394:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.2586669921875	2	551.318774	1100.623	1.9234	0.0010604	0.00059068	3.2565E-07	1.924	0.0010607	551.3189034033257	136.94	0.86487	136.94	136.63	137.5	0					33	17	3	0	0	0	0.026688	1	15945	15945		49.442	1.7842	1	152660			64944	11939	53527	53578	71548	71548					0.07670889028463534
YLPELLQTV	9	Unmodified	_YLPELLQTV_					0	0	0		ENSG00000171617|ENST00000302351|ENC1;nc|ENSG00000171617|O14682-2|ENC1	ENSG00000171617|ENST00000302351|ENC1	ENSG00000171617|ENST00000302351|ENC1	MULTI-MSMS	OvCa99_classI_Rep5	1	538.3060913085938	2	538.305332	1074.59611	0.61085	0.00032883	1.7315	0.00093206	2.3423	0.0012609	538.3061033542708	141.16	0.80516	141.16	140.83	141.64	0					50	15	4	0	0	0	0.094616	2	16498	16474;16498		98.629	29.002	1	678040			64945	7220	53528	53579	71549;71550	71550					0.0617978041727838
YLPELLQTV	9	Unmodified	_YLPELLQTV_					0	0	0		ENSG00000171617|ENST00000302351|ENC1;nc|ENSG00000171617|O14682-2|ENC1	ENSG00000171617|ENST00000302351|ENC1	ENSG00000171617|ENST00000302351|ENC1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	538.305332	1074.59611	-1.5572	-0.00083822	2.1118	0.0011368	0.55463	0.00029856	538.8063764601366	142.17	1.1394	141.16	140.78	141.92	-1.0106	0.0015038	0.00038897	NaN	98.629	33	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17249			64946	7220	53528	53579							0.0617978041727838
YLPGFLLLY	9	Unmodified	_YLPGFLLLY_					0	0	0		ENST00000484270.2_1_1:32508253-32510936:+|nuORF;ENST00000327300.11_1_1:32508253-32508379:+|nuORF	ENST00000484270.2_1_1:32508253-32510936:+|nuORF	ENST00000484270.2_1_1:32508253-32510936:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	549.8160400390625	2	549.815336	1097.61612	1.5827	0.00087018	-3.3152	-0.0018228	-1.7325	-0.00095257	549.8134241640558	125.74	1.0711	125.74	125.49	126.56	0					47	22	3	0	0	0	0.22187	1	14531	14531		72.62	23.178	1	599690			64947	10414	53529	53580	71551	71551					0.07121576147892483
YLPGFLLLY	9	Unmodified	_YLPGFLLLY_					0	0	0		ENST00000484270.2_1_1:32508253-32510936:+|nuORF;ENST00000327300.11_1_1:32508253-32508379:+|nuORF	ENST00000484270.2_1_1:32508253-32510936:+|nuORF	ENST00000484270.2_1_1:32508253-32510936:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	549.815336	1097.61612	0.77048	0.00042362	-4.4008	-0.0024197	-3.6304	-0.001996	549.8127796365916	126.8	1.3063	125.73	125.34	126.64	-1.0715	0.086301	-0.00089996	NaN	72.62	52	24	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	77806			64948	10414	53529	53580							0.07121576147892483
YLPHLTLFL	9	Unmodified	_YLPHLTLFL_					0	0	0		ENSG00000182372|ENST00000331222|CLN8;ENST00000523237.1_1_8:1721944-1728730:+|nuORF	ENSG00000182372|ENST00000331222|CLN8	ENSG00000182372|ENST00000331222|CLN8	MULTI-MSMS	OvCa99_classI_Rep5	1	558.8223876953125	2	558.826235	1115.63792	1.6784	0.00093795	0.33928	0.0001896	2.0177	0.0011275	558.8262949027699	144.47	1.0748	144.47	144.06	145.13	0					41	21	3	0	0	0	0.17908	1	16882	16882		79.939	7.3193	1	207870			64949	7997	53530	53581	71552	71552					0.08472380896455434
YLPKFSVLV	9	Unmodified	_YLPKFSVLV_					0	0	0		ENST00000339728.5_1_2:235401734-235401923:-|nuORF	ENST00000339728.5_1_2:235401734-235401923:-|nuORF	ENST00000339728.5_1_2:235401734-235401923:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.27734375	2	533.320786	1064.62702	0.36383	0.00019404	-4.3081	-0.0022976	-3.9443	-0.0021036	533.3186019642834	85.874	0.89468	83.227	82.848	83.743	-2.6463					48	17	4	0	0	0	0.027462	1	7282	7282		38.806	1.647	1	72759			64950	10553	53531	53582	71553	71553					0.09728978522161924
YLPLIAVL	8	Unmodified	_YLPLIAVL_					0	0	0			REV__ENSG00000168263|ENST00000382082|KCNV2	REV__ENSG00000168263|ENST00000382082|KCNV2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	451.2792053222656	2	451.291497	900.568441	0.97393	0.00043953	3.6129	0.0016305	4.5868	0.00207	451.29567913349416	112.14	0.26341	110.63	110.47	110.74	-1.5111					6	4	2	0	0	0	0.028476	1	10337	10337		54.895	0	1	3425.1	+		64951	21357	53532	53583	71554	71554					0.11417921947690957
YLPPGWELD	9	Unmodified	_YLPPGWELD_					0	0	0			REV__ENST00000457422.6_1_17:42755944-42756196:-|nuORF	REV__ENST00000457422.6_1_17:42755944-42756196:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.8170776367188	2	545.266207	1088.51786	2.5201	0.0013741	0.7729	0.00042144	3.293	0.0017956	545.2667717596667	86.401	0.23975	86.401	86.231	86.471	0					8	5	2	0	0	0	0.027462	1	9118	9118		50.025	5.9077	1	163450	+		64952	26046	53533	53584	71555	71555					-0.022856521679386788
YLPPLFWRF	9	Unmodified	_YLPPLFWRF_					0	0	0		PANX1|p.L366Pfs*2|1|0.2|ENSG00000110218|chr11:94180153-94180153|T/-|frameshift_variant;nc|ENSG00000110218|Q96RD7-2|PANX1;ENSG00000110218|ENST00000227638|PANX1	PANX1|p.L366Pfs*2|1|0.2|ENSG00000110218|chr11:94180153-94180153|T/-|frameshift_variant	PANX1|p.L366Pfs*2|1|0.2|ENSG00000110218|chr11:94180153-94180153|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	619.8421630859375	2	619.839677	1237.6648	0.55425	0.00034355	1.65	0.0010227	2.2043	0.0013663	619.8406269100077	152.43	1.9041	152.43	151.97	153.88	0					79	42	2	0	0	0	0.19716	2	17862	17839;17862		76.847	32.469	1	1109600			64953	2763	53534	53585	71556;71557	71557					0.055474895076486064
YLPPNTIFK	9	Unmodified	_YLPPNTIFK_					0	0	0		Tigger2_dup43|chr1:52036089-52037207:-|1.0572414785124398|0.4218533099472232|1.33|428.0|16|2|sense	Tigger2_dup43|chr1:52036089-52037207:-|1.0572414785124398|0.4218533099472232|1.33|428.0|16|2|sense	Tigger2_dup43|chr1:52036089-52037207:-|1.0572414785124398|0.4218533099472232|1.33|428.0|16|2|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	546.808349609375	2	546.808042	1091.60153	-0.99544	-0.00054432	0.69287	0.00037887	-0.30258	-0.00016545	546.8082578719798	116.77	2.0318	116.64	116.42	118.45	-0.12868					100	40	4	0	0	0	0.55588	1	11196	11196		37.159	1.5408	1	305590			64954	32957	53535	53586	71558	71558					0.059395039997752974
YLPPSLPPSL	10	Unmodified	_YLPPSLPPSL_					0	0	0		nc|ENSG00000132000|Q6PEZ8-3|PODNL1;nc|ENSG00000132000|Q6PEZ8|PODNL1;ENSG00000132000|ENST00000588872|PODNL1	nc|ENSG00000132000|Q6PEZ8-3|PODNL1	nc|ENSG00000132000|Q6PEZ8-3|PODNL1	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.7979125976562	2	542.307875	1082.6012	1.284	0.0006963	0.90375	0.00049011	2.1877	0.0011864	542.3083189309307	146.54	0.5396	146.54	146.33	146.87	0					20	10	3	0	0	0	0.026915	1	17173	17173		35.618	19.145	1	89023			64955	4104	53536	53587	71559	71559					0.06320084279923321
YLPPVGPR	8	Unmodified	_YLPPVGPR_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;ENSG00000114374|ENST00000338981|USP9Y	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-MSMS	OvCa9_classI_Rep2	2	449.76458740234375	2	449.760895	897.507237	5.9884	0.0026934	2.0789	0.00093502	8.0674	0.0036284	449.7616579337906	25.669	0.8354	22.96	22.778	23.613	-2.7097					39	19	3	0	0	0	0.7543	1	286	286		24.504	1.4673	1	137640			64956	3653	53537	53588	71560	71560					0.054384099682806664
YLQKAMMKLD	10	Unmodified	_YLQKAMMKLD_					0	0	0		ENST00000587908.1_1_19:56832840-56833431:-|nuORF	ENST00000587908.1_1_19:56832840-56833431:-|nuORF	ENST00000587908.1_1_19:56832840-56833431:-|nuORF	MSMS	OvCa99_classI_Rep5	1	620.83203125	2	620.825052	1239.63555	NaN	NaN	NaN	NaN	NaN	NaN	NaN	122.49	1	122.49	121.99	122.99	0								0	0	0	0.15165	1	14109	14109		47.96	3.4285	1				64957	14071	53538	53589	71561	71561					0.0253184110483744
YLQLLVAL	8	Unmodified	_YLQLLVAL_					0	0	0			REV__nc|ENSG00000134444|Q9P260|RELCH	REV__nc|ENSG00000134444|Q9P260|RELCH	MULTI-MSMS	OvCa9_classI_Rep2	2	466.79473876953125	2	466.794404	931.574254	0.16431	7.67E-05	-0.27024	-0.00012615	-0.10593	-4.9446E-05	466.7941140608781	113.74	1.5796	113.63	113.37	114.95	-0.11777					73	31	3	0	0	0	0.65582	1	10792	10792		52.299	3.0884	1	211490	+		64958	19203	53539	53590	71562	71562					0.10573020459389681
YLQLLVAL	8	Unmodified	_YLQLLVAL_					0	0	0			REV__nc|ENSG00000134444|Q9P260|RELCH	REV__nc|ENSG00000134444|Q9P260|RELCH	MULTI-MSMS	OvCa9_classI_Rep3	3	466.79388427734375	2	466.794404	931.574254	-0.11357	-5.3013E-05	0.08487	3.9617E-05	-0.028699	-1.3397E-05	466.7942385092766	114.69	1.6288	113.63	113.3	114.93	-1.055					72	32	3	0	0	0	0.60486	2	8480	8480;8492		62.978	2.5748	1	225500	+		64959	19203	53539	53590	71563;71564	71563					0.10573020459389681
YLQLLVAL	8	Unmodified	_YLQLLVAL_					0	0	0			REV__nc|ENSG00000134444|Q9P260|RELCH	REV__nc|ENSG00000134444|Q9P260|RELCH	MULTI-MSMS	OvCa9_classI_Rep4_	4	466.7945556640625	2	466.794404	931.574254	0.4922	0.00022975	-0.75227	-0.00035116	-0.26008	-0.0001214	466.7939124327931	115	1.6641	113.6	113.15	114.81	-1.3977					75	32	4	0	0	0	0.60486	1	10686	10686		62.978	2.0065	1	247140	+		64960	19203	53539	53590	71565	71565					0.10573020459389681
YLQLWRLLL	9	Unmodified	_YLQLWRLLL_					0	0	0		ENSG00000180998|ENST00000321662|GPR137C	ENSG00000180998|ENST00000321662|GPR137C	ENSG00000180998|ENST00000321662|GPR137C	MULTI-MSMS	OvCa99_classI_Rep5	1	609.3738403320312	2	609.373884	1216.73321	0.56551	0.00034461	-0.78329	-0.00047732	-0.21778	-0.00013271	609.3731861911076	164.45	1.5748	164.45	163.72	165.3	0					107	58	2	0	0	0	0.71234	1	19150	19150		13.775	1.5685	1	34749			64961	7908	53540	53591	71566	71566					0.13351734087518707
YLQPEDEVWL	10	Unmodified	_YLQPEDEVWL_					0	0	0		nc|ENSG00000163145|Q9BXJ2-2|C1QTNF7;ENSG00000163145|ENST00000444304|C1QTNF7	nc|ENSG00000163145|Q9BXJ2-2|C1QTNF7	nc|ENSG00000163145|Q9BXJ2-2|C1QTNF7	MULTI-SECPEP	OvCa9_classI_Rep4_	4	431.2332458496094	3	431.211683	1290.61322	0.34431	0.00014847	4.3066	0.0018571	4.6509	0.0020055	431.2141242166819	40.296	0.15833	37.342	37.263	37.421	-2.9541					4	2	2	0	0	0	0.027062	1	1723	1723		26.063	4.283	1	20780			64962	6272	53541	53592	71567	71567					-0.02046343767574399
YLQPEDEVWL	10	Unmodified	_YLQPEDEVWL_					0	0	0		nc|ENSG00000163145|Q9BXJ2-2|C1QTNF7;ENSG00000163145|ENST00000444304|C1QTNF7	nc|ENSG00000163145|Q9BXJ2-2|C1QTNF7	nc|ENSG00000163145|Q9BXJ2-2|C1QTNF7	MULTI-MATCH	OvCa99_classI_Rep5	1		3	431.211683	1290.61322	-0.43067	-0.00018571	9.6308	0.0041529	9.2001	0.0039672	431.2156036747638	37.737	0.27585	37.737	37.576	37.851	0	0.19787	0.0020882	NaN	26.063	10	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57282			64963	6272	53541	53592							-0.02046343767574399
YLQPFKDK	8	Unmodified	_YLQPFKDK_					0	0	0		nc|ENSG00000248905|Q68DA7-5|FMN1;ENSG00000248905|ENST00000616417|FMN1	nc|ENSG00000248905|Q68DA7-5|FMN1	nc|ENSG00000248905|Q68DA7-5|FMN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	520.2675170898438	2	519.784567	1037.55458	0.37613	0.00019551	0.55489	0.00028843	0.93102	0.00048393	519.7847472926625	132.03	0.32739	132.03	131.81	132.13	0					8	6	2	0	0	0	0.028476	1	15321	15321		42.396	0	1	23458			64964	15348	53542	53593	71568	71568					0.037306444486148393
YLQTNGKVIL	10	Unmodified	_YLQTNGKVIL_					0	0	0		SENP6|p.T297S|1|0.42|ENSG00000112701|chr6:75663414-75663414|C/G|missense_variant;nc|ENSG00000112701|Q9GZR1-2|SENP6;ENSG00000112701|ENST00000447266|SENP6	SENP6|p.T297S|1|0.42|ENSG00000112701|chr6:75663414-75663414|C/G|missense_variant	SENP6|p.T297S|1|0.42|ENSG00000112701|chr6:75663414-75663414|C/G|missense_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	574.8384399414062	2	574.837331	1147.66011	-0.87533	-0.00050317	0.20724	0.00011913	-0.66808	-0.00038404	574.8373813616681	91.362	5.8049	88.819	88.449	94.254	-2.5425					226	116	5	0	0	0	0.58067	1	7884	7884		44.377	3.599	1	3993100			64965	2921	53543	53594	71569	71569					0.0921856057423156
YLRAAILLF	9	Unmodified	_YLRAAILLF_					0	0	0			REV__ENST00000354336.7_1_22:21304365-21304482:+|nuORF	REV__ENST00000354336.7_1_22:21304365-21304482:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.33203125	2	540.334227	1078.6539	-7.0849	-0.0038282	-0.47804	-0.0002583	-7.5629	-0.0040865	540.3339144529704	160.11	0.74295	158.5	158.24	158.98	-1.6101					38	17	3	0	0	0	0.6926	1	15830	15830		20.482	1.1219	1	51162	+		64966	24734	53544	53595	71570	71570					0.1177208713336313
YLRALGLAIS	10	Unmodified	_YLRALGLAIS_					0	0	0		ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	ENSG00000183751|ENST00000568546|TBL3	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.8272094726562	2	538.826766	1075.63898	-1.3695	-0.0007379	0.5105	0.00027507	-0.85896	-0.00046283	538.8270006767474	93.446	2.9138	90.938	90.614	93.527	-2.5072					151	59	5	0	0	0	0.46756	1	8228	8228		58.782	5.8453	1	3549600			64967	8101	53545	53596	71571	71571					0.1041859526535518
YLRELQIF	8	Unmodified	_YLRELQIF_					0	0	0			REV__nc|ENSG00000162852|Q6PJW8-3|CNST	REV__nc|ENSG00000162852|Q6PJW8-3|CNST	MULTI-MSMS	OvCa99_classI_Rep5	1	541.3075561523438	2	541.305667	1080.59678	1.7831	0.00096521	0.028278	1.5307E-05	1.8114	0.00098052	541.305461300108	107.19	0.92699	107.19	106.89	107.82	0					52	21	4	0	0	0	0.61758	1	12100	12100		60.294	0	1	2859600	+		64968	16155	53546	53597	71572	71572					0.059706198569983826
YLREVPLSL	9	Unmodified	_YLREVPLSL_					0	0	0			REV__ENSG00000180902|ENST00000321264|D2HGDH	REV__ENSG00000180902|ENST00000321264|D2HGDH	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3169555664062	2	545.318774	1088.623	-1.7047	-0.0009296	-2.3858	-0.001301	-4.0905	-0.0022306	545.3174680096396	141.82	4.7449	141.59	140.14	144.88	-0.22696					312	95	6	0	0	0	0.5811	1	14169	14169		34.173	5.0025	1	202430	+		64969	22205	53547	53598	71573	71573					0.08222889028479585
YLRIADLI	8	Unmodified	_YLRIADLI_					0	0	0		ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	ENSG00000162511|ENST00000294507|LAPTM5	MULTI-MSMS	OvCa99_classI_Rep5	1	488.7965393066406	2	488.794935	975.575317	1.6321	0.00079775	0.69775	0.00034106	2.3298	0.0011388	488.7951294535475	125.92	0.93859	125.92	125.67	126.61	0					48	19	4	0	0	0	0.27528	2	14564	14541;14564		111.65	8.8749	1	924320			64970	6188	53548	53599	71574;71575	71575					0.08655234828268021
YLRLDKPSL	9	Unmodified	_YLRLDKPSL_					0	0	0			REV__ENST00000493710.1_1_7:128106625-128109222:+|nuORF	REV__ENST00000493710.1_1_7:128106625-128109222:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	552.824951171875	2	552.824224	1103.63389	2.0018	0.0011066	0.29099	0.00016087	2.2928	0.0012675	552.8248166468763	87.694	1.6205	87.694	86.931	88.551	0					159	38	6	0	0	0	0.35444	1	9355	9355		56.721	0.28726	1	6785400	+		64971	21697	53549	53600	71576	71576					0.08622291402753035
YLRLFLVK	8	Unmodified	_YLRLFLVK_					0	0	0			REV__nc|ENSG00000013374|Q9Y5A7-2|NUB1	REV__nc|ENSG00000013374|Q9Y5A7-2|NUB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	526.766845703125	2	526.33677	1050.65899	1.5974	0.00084079	-3.3439	-0.00176	-1.7464	-0.00091922	526.3348932777008	92.061	0.88142	92.061	91.753	92.635	0					27	20	2	0	0	0	0.028476	1	9919	9919		35.201	6.9464	1	735690	+		64972	16506	53550	53601	71577	71577					0.1356839099598801
YLRLLVKL	8	Unmodified	_YLRLLVKL_					0	0	0		ENST00000552705.5_1_19:49119841-49122400:-|nuORF;ENST00000552347.5_1_19:49120227-49122400:-|nuORF;ENSG00000063177|ENST00000549920|RPL18	ENST00000552705.5_1_19:49119841-49122400:-|nuORF	ENST00000552705.5_1_19:49119841-49122400:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	509.34539794921875	2	509.344595	1016.67464	2.0337	0.0010359	0.27816	0.00014168	2.3119	0.0011775	509.3445939152494	118	2.0117	118	117.41	119.43	0					92	42	3	0	0	0	0.53531	1	13509	13509		73.975	23.95	1	512070			64973	1286	53551	53602	71578	71578					0.1669667751303905
YLRNDLQVE	9	Unmodified	_YLRNDLQVE_					0	0	0			REV__ENSG00000184895|ENST00000383070|SRY	REV__ENSG00000184895|ENST00000383070|SRY	MULTI-MSMS	OvCa99_classI_Rep5	1	575.2994384765625	2	575.29857	1148.58259	-0.57956	-0.00033342	-0.95865	-0.00055151	-1.5382	-0.00088493	575.2979235700235	68.502	0.82967	68.502	68.233	69.063	0					58	19	4	0	0	0	0.59259	1	6484	6484		32.812	1.2826	1	7908700	+		64974	22454	53552	53603	71579	71579					0.014239226380595937
YLRNGRISVA	10	Unmodified	_YLRNGRISVA_					0	0	0			REV__tr|A0A7D6ZX44|A0A7D6ZX44_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21620PE=4SV=1	REV__tr|A0A7D6ZX44|A0A7D6ZX44_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21620PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	574.83203125	2	574.830372	1147.64619	1.7336	0.00099653	4.437	0.0025505	6.1706	0.0035471	574.8325534583702	122.38	0.68688	122.38	121.99	122.68	0					34	14	3	0	0	0	0.37918	1	14080	14080		71.296	2.5089	1	282140	+		64975	32314	53553	53604	71580	71580					0.0782732786581164
YLRNGRISVA	10	Unmodified	_YLRNGRISVA_					0	0	0			REV__tr|A0A7D6ZX44|A0A7D6ZX44_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21620PE=4SV=1	REV__tr|A0A7D6ZX44|A0A7D6ZX44_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_21620PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	574.830372	1147.64619	1.7336	0.00099653	4.437	0.0025505	6.1706	0.0035471	574.8325534583702	122.38	0.68688	122.38	121.99	122.68	0	0	0	NaN	71.296	34	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	282140	+		64976	32314	53553	53604							0.0782732786581164
YLRRLLRPLQM	11	Unmodified	_YLRRLLRPLQM_					0	0	0		nc|ENSG00000173193|Q460N5-5|PARP14	nc|ENSG00000173193|Q460N5-5|PARP14	nc|ENSG00000173193|Q460N5-5|PARP14	MULTI-MSMS	OvCa9_classI_Rep3	3	486.95782470703125	3	486.962379	1457.86531	-6.9542	-0.0033864	0.032958	1.6049E-05	-6.9213	-0.0033704	486.9622029105925	158.45	2.296	157.18	156.33	158.63	-1.267					151	56	3	0	0	0	0.72573	1	13670	13670		6.001	1.6622	1	50747			64977	15183	53554	53605	71581	71581					0.15469015832832156
YLRSWYSTQ	9	Unmodified	_YLRSWYSTQ_					0	0	0			REV__TPCN1|p.H662Y|1|0.15|ENSG00000186815|chr12:113291633-113291633|C/T|missense_variant	REV__TPCN1|p.H662Y|1|0.15|ENSG00000186815|chr12:113291633-113291633|C/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	401.230712890625	3	401.864617	1202.57202	1.8669	0.00075025	1.9442	0.00078132	3.8112	0.0015316	401.8655575354903	74.115	0.45635	74.115	73.868	74.324	0					15	11	2	0	0	0	0.027462	1	7273	7273		12.207	0	1	185280	+		64978	29523	53555	53606	71582	71582					-0.021160600163966592
YLRTVMIL	8	Unmodified	_YLRTVMIL_					0	0	0		ENST00000415414.5_1_1:180241756-180243086:-|nuORF	ENST00000415414.5_1_1:180241756-180243086:-|nuORF	ENST00000415414.5_1_1:180241756-180243086:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.3253479003906	2	504.799163	1007.58377	-0.32127	-0.00016218	-3.8423	-0.0019396	-4.1635	-0.0021018	504.7970796904423	60.086	1.2479	60.086	59.611	60.859	0					51	30	2	0	0	0	0.028476	1	5249	5249		25.45	0	1	518440			64979	11588	53556	53607	71583	71583					0.08028465473273627
YLSAQNKGL	9	Unmodified	_YLSAQNKGL_					0	0	0		nc|ENSG00000067208|O60447|EVI5;nc|ENSG00000067208|O60447-2|EVI5;ENSG00000067208|ENST00000684568|EVI5;ENST00000492513.5_1_1:93073119-93091404:-|nuORF	nc|ENSG00000067208|O60447|EVI5	nc|ENSG00000067208|O60447|EVI5	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.2713623046875	2	497.271824	992.529095	1.1122	0.00055307	-1.4164	-0.00070435	-0.30424	-0.00015129	497.2710728045279	86.114	1.8416	83.468	83.091	84.933	-2.6463					81	36	4	0	0	0	0.33652	1	7274	7274		58.782	0.97068	1	655240			64980	1371	53557	53608	71584	71584					0.03253169926199462
YLSDNVHLV	9	Unmodified	_YLSDNVHLV_					0	0	0		ENSG00000105401|ENST00000222005|CDC37	ENSG00000105401|ENST00000222005|CDC37	ENSG00000105401|ENST00000222005|CDC37	MULTI-MSMS	OvCa99_classI_Rep5	1	530.2786865234375	2	530.277106	1058.53966	2.7213	0.0014431	-0.74434	-0.00039471	1.977	0.0010484	530.2766338840142	90.284	0.59998	90.284	89.977	90.577	0					41	14	4	0	0	0	0.22621	1	9659	9659		71.877	0.58177	1	8074200			64981	2452	53558	53609	71585	71585					0.012731525806202626
YLSEKISLD	9	Unmodified	_YLSEKISLD_					0	0	0		ENSG00000185274|ENST00000333538|GALNT17	ENSG00000185274|ENST00000333538|GALNT17	ENSG00000185274|ENST00000333538|GALNT17	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.2844848632812	2	534.284597	1066.55464	-1.2512	-0.00066849	0.045339	2.4224E-05	-1.2059	-0.00064427	534.2847652774342	143.71	1.0923	142.26	141.89	142.98	-1.4427					46	20	3	0	0	0	0.53957	1	14082	14082		38.806	13.356	1	84175			64982	8241	53559	53610	71586	71586					0.024025996579666753
YLSESTEPLL	10	Unmodified	_YLSESTEPLL_					0	0	0		tr|A0A553SIR3|A0A553SIR3_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_15335PE=3SV=1	tr|A0A553SIR3|A0A553SIR3_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_15335PE=3SV=1	tr|A0A553SIR3|A0A553SIR3_NIACIGer(X)CfamilysporegerminationproteinOS=NialliacirculansOX=1397GN=CEQ21_15335PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	576.29638671875	2	576.295162	1150.57577	1.5133	0.00087212	1.7804	0.0010261	3.2938	0.0018982	576.2958731771798	118.56	0.66074	118.56	118.3	118.96	0					26	13	3	0	0	0	0.45225	1	13594	13594		60.972	5.4677	1	136270			64983	33416	53560	53611	71587	71587					0.006505649668270053
YLSHAEPI	8	Unmodified	_YLSHAEPI_					0	0	0			REV__ENSG00000123066|ENST00000281928|MED13L;REV__ENSG00000108510|ENST00000397786|MED13	REV__ENSG00000108510|ENST00000397786|MED13	MULTI-SECPEP	OvCa9_classI_Rep4_	4	465.2857971191406	2	465.239993	928.465432	-2.6261	-0.0012218	-3.6045	-0.001677	-6.2306	-0.0028987	465.2386632922422	126.23	0.19438	124.82	124.73	124.92	-1.4143					5	3	2	0	0	0	0.028476	1	12005	12005		33.516	3.0119	1	12861	+		64984	17893;18621	53561	53612	71588	71588					-0.0016619051090174253
YLSIFAPFL	9	Unmodified	_YLSIFAPFL_					0	0	0		ENSG00000164615|ENST00000297156|CAMLG	ENSG00000164615|ENST00000297156|CAMLG	ENSG00000164615|ENST00000297156|CAMLG	MSMS	OvCa99_classI_Rep5	1	535.7977905273438	2	535.799686	1069.58482	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.99	1	100.99	100.49	101.49	0								0	0	0	0.11949	1	11216	11216		68.485	2.0554	1				64985	6470	53562	53613	71589	71589					0.05281003113805127
YLSISKQQYS	10	Unmodified	_YLSISKQQYS_					0	0	0			REV__ENST00000489507.1_1_2:98504513-98611990:-|nuORF	REV__ENST00000489507.1_1_2:98504513-98611990:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	607.8488159179688	2	608.814053	1215.61355	-0.28114	-0.00017116	-3.5908	-0.0021861	-3.8719	-0.0023573	608.8119741354889	69.862	1.1697	66.38	66.009	67.178	-3.4812					51	23	4	0	0	0	0.02658	1	5312	5312		74.255	4.6274	1	281010	+		64986	16975	53563	53614	71590	71590					0.014370759522989829
YLSISKQQYS	10	Unmodified	_YLSISKQQYS_					0	0	0			REV__ENST00000489507.1_1_2:98504513-98611990:-|nuORF	REV__ENST00000489507.1_1_2:98504513-98611990:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	608.814053	1215.61355	-0.46207	-0.00028131	-1.8295	-0.0011138	-2.2915	-0.0013951	608.8128042857286	66.311	0.23827	66.311	66.174	66.412	0	-0.07338	0.0019058	NaN	74.255	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	221130	+		64987	16975	53563	53614							0.014370759522989829
YLSLRCLL	8	Unmodified	_YLSLRCLL_					0	0	0			REV__nc|ENSG00000102539|O43193-2|MLNR	REV__nc|ENSG00000102539|O43193-2|MLNR	MULTI-MSMS	OvCa99_classI_Rep5	1	490.7842102050781	2	490.783513	979.552473	2.5257	0.0012396	0.16069	7.8865E-05	2.6864	0.0013184	490.7833747070732	96.27	0.79636	96.27	95.956	96.753	0					41	18	3	0	0	0	0.62934	1	10517	10517		57.811	0	1	2584100	+		64988	17560	53564	53615	71591	71591					0.06187892439152165
YLSLRKKNI	9	Unmodified	_YLSLRKKNI_					0	0	0			REV__tr|A0A7D7ADL5|A0A7D7ADL5_9CLOTEndonucleaseMutS2OS=ClostridiumintestinaleOX=36845GN=HZF06_23300PE=4SV=1	REV__tr|A0A7D7ADL5|A0A7D7ADL5_9CLOTEndonucleaseMutS2OS=ClostridiumintestinaleOX=36845GN=HZF06_23300PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	567.8077392578125	2	567.853316	1133.69208	0.54731	0.00031079	-1.4134	-0.00080263	-0.86614	-0.00049184	568.3540819822477	69.699	2.3971	66.218	64.439	66.836	-3.4812					61	48	2	0	0	0	0.027462	1	5299	5299		24.203	13.937	1	49987	+		64989	32696	53565	53616	71592	71592					0.1305797304803491
YLSPDLSKI	9	Unmodified	_YLSPDLSKI_					0	0	0		ENST00000470206.1_1_X:47429390-47430982:+|nuORF;ENSG00000078061|ENST00000377045|ARAF	ENST00000470206.1_1_X:47429390-47430982:+|nuORF	ENST00000470206.1_1_X:47429390-47430982:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	518.2902221679688	2	518.289682	1034.56481	1.1904	0.00061697	1.4426	0.00074767	2.633	0.0013646	518.2904150524671	98.202	0.81371	98.202	97.912	98.725	0					38	18	3	0	0	0	0.22621	1	10802	10802		71.877	2.2498	1	1074700			64990	1583	53566	53617	71593	71593					0.04891207383184337
YLSPTIQKIA	10	Unmodified	_YLSPTIQKIA_					0	0	0		tr|A0A7D6ZIN9|A0A7D6ZIN9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07820PE=4SV=1	tr|A0A7D6ZIN9|A0A7D6ZIN9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07820PE=4SV=1	tr|A0A7D6ZIN9|A0A7D6ZIN9_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07820PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	567.3291625976562	2	567.331882	1132.64921	-0.48412	-0.00027465	-3.1025	-0.0017602	-3.5866	-0.0020348	567.3299446868054	145.54	4.8872	144.11	142.68	147.57	-1.4357					247	95	4	0	0	0	0.69073	1	14532	14532		31.53	3.6476	1	208760			64991	35622	53567	53618	71594	71594					0.0881915819995811
YLSQDTVSV	9	Unmodified	_YLSQDTVSV_					0	0	0		ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	ENSG00000117984|ENST00000236671|CTSD	MULTI-MSMS	OvCa99_classI_Rep5	1	506.2549133300781	2	506.253297	1010.49204	2.3954	0.0012127	0.073456	3.7187E-05	2.4689	0.0012499	506.25318953611907	88.893	0.84485	88.893	88.508	89.352	0					44	20	4	0	0	0	0.1149	2	9456	9456;9487		93.143	21.266	1	3437700			64992	3284	53568	53619	71595;71596	71595					-0.012785464102307742
YLSQRFSKM	9	Oxidation (M)	_YLSQRFSKM(Oxidation (M))_		YLSQRFSKM(1)		YLSQRFSKM(67)	0	0	1			REV__ENSG00000167981|ENST00000301744|ZNF597	REV__ENSG00000167981|ENST00000301744|ZNF597	MULTI-MSMS	OvCa9_classI_Rep2	2	588.2986450195312	2	588.297516	1174.58048	-0.12574	-7.3971E-05	-0.18426	-0.0001084	-0.31	-0.00018237	588.2970977003064	86.655	1.6797	85.224	84.751	86.431	-1.4311					103	32	5	0	0	0	0.26076	1	7548	7548		67.494	11.06	1	558380	+		64993	21328	53569	53620	71597	71597		496			0.00017170628575513547
YLSRISICK	9	Unmodified	_YLSRISICK_					0	0	0		NLRP3|p.R252Sfs*3|1|0.04|ENSG00000162711|chr1:247424198-247424199|-/T|frameshift_variant;nc|ENSG00000162711|Q96P20-3|NLRP3;ENST00000474792.1_1_1:247582090-247588902:+|nuORF;nc|ENSG00000162711|Q96P20-2|NLRP3;nc|ENSG00000162711|Q96P20-5|NLRP3;nc|ENSG00000162711|Q96P20-4|NLRP3;nc|ENSG00000162711|Q96P20-6|NLRP3;ENSG00000162711|ENST00000336119|NLRP3;nc|ENSG00000162711|Q96P20|NLRP3	NLRP3|p.R252Sfs*3|1|0.04|ENSG00000162711|chr1:247424198-247424199|-/T|frameshift_variant	NLRP3|p.R252Sfs*3|1|0.04|ENSG00000162711|chr1:247424198-247424199|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	541.804443359375	2	541.804977	1081.5954	-1.3029	-0.00070592	0.49692	0.00026923	-0.80598	-0.00043669	541.8052691155432	80.327	1.6539	77.616	76.791	78.445	-2.7106					68	33	5	0	0	0	0.46377	1	6569	6569		45.952	0	1	758010			64994	6218	53570	53621	71598	71598					0.05786662496598183
YLSVANIQLH	10	Unmodified	_YLSVANIQLH_					0	0	0			REV__nc|ENSG00000102893|Q93100-4|PHKB	REV__nc|ENSG00000102893|Q93100-4|PHKB	MULTI-MSMS	OvCa9_classI_Rep4_	4	579.3173828125	2	579.319306	1156.62406	-0.41226	-0.00023883	-3.6206	-0.0020975	-4.0328	-0.0023363	579.3171446209145	38.652	1.8901	35.725	35.453	37.343	-2.9264					115	37	4	0	0	0	0.58282	1	1514	1514		44.117	4.864	1	1278600	+		64995	17577	53571	53622	71599	71599					0.05201103397371298
YLTAEVLEL	9	Unmodified	_YLTAEVLEL_					0	0	0		nc|ENSG00000105968|Q71UI9-4|H2AZ2;ENSG00000164032|ENST00000296417|H2AZ1;ENSG00000105968|ENST00000308153|H2AZ2;ENST00000511319.5_1_4:100869621-100871200:-|nuORF;nc|ENSG00000105968|Q71UI9-2|H2AZ2;ENST00000511203.1_1_4:100869836-100870579:-|nuORF	nc|ENSG00000105968|Q71UI9-4|H2AZ2;ENST00000511203.1_1_4:100869836-100870579:-|nuORF	nc|ENSG00000105968|Q71UI9-4|H2AZ2	MULTI-MSMS	OvCa99_classI_Rep5	1	525.7910766601562	2	525.789515	1049.56448	0.31816	0.00016728	2.1807	0.0011466	2.4989	0.0013139	525.7905354169013	140.91	0.5506	140.91	140.63	141.18	0					18	10	2	0	0	0	0.29717	1	16464	16464		63.306	7.8021	1	134570			64996	2519;12982	53572	53623	71600	71600					0.041677876633457345
YLTASVWLTF	10	Unmodified	_YLTASVWLTF_					0	0	0		ENSG00000170837|ENST00000304411|GPR27	ENSG00000170837|ENST00000304411|GPR27	ENSG00000170837|ENST00000304411|GPR27	MULTI-MSMS	OvCa99_classI_Rep5	1	601.3170776367188	2	600.818607	1199.62266	2.6635	0.0016003	-3.2223	-0.001936	-0.5588	-0.00033574	600.8174633271815	121.12	0.41864	121.12	120.97	121.38	0					14	9	2	0	0	0	0.53885	1	13931	13931		49.442	3.4693	1	171730			64997	7142	53573	53624	71601	71601					0.03083469308603526
YLTDRIDAF	9	Unmodified	_YLTDRIDAF_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN-WDR67|2|fusion;UTRN-WDR67|1|fusion	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-SECPEP	OvCa9_classI_Rep2	2	557.8152465820312	2	557.282389	1112.55022	1.8249	0.001017	-1.3192	-0.00073515	0.50576	0.00028185	557.2815586152076	91.09	1.1042	89.855	89.538	90.642	-1.2355					37	20	2	0	0	0	0.027447	1	8075	8075		39.253	0	1	97970			64998	5647	53574	53625	71602	71602					-0.001548647649542545
YLTDRIDAF	9	Unmodified	_YLTDRIDAF_					0	0	0		ENSG00000152818|ENST00000367545|UTRN;nc|ENSG00000152818|P46939-2|UTRN;UTRN-WDR67|2|fusion;UTRN-WDR67|1|fusion	ENSG00000152818|ENST00000367545|UTRN	ENSG00000152818|ENST00000367545|UTRN	MULTI-MATCH	OvCa9_classI_Rep3	3		2	557.282389	1112.55022	-1.4792	-0.00082431	1.2795	0.00071306	-0.19963	-0.00011125	557.2829540357288	91.854	0.93301	89.83	89.382	90.315	-2.0241	0.013107	0.0014896	NaN	39.253	31	18	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	144400			64999	5647	53574	53625							-0.001548647649542545
YLTHDSPSV	9	Unmodified	_YLTHDSPSV_					0	0	0		ENSG00000124562|ENST00000244520|SNRPC	ENSG00000124562|ENST00000244520|SNRPC	ENSG00000124562|ENST00000244520|SNRPC	MULTI-MSMS	OvCa99_classI_Rep5	1	509.7413635253906	2	509.745639	1017.47673	0.027802	1.4172E-05	-0.023271	-1.1862E-05	0.0045316	2.31E-06	509.7455409724781	58.425	1.0438	58.425	58.112	59.156	0					61	25	5	0	0	0	0.11171	1	4960	4960		94.006	11.256	1	6223300			65000	3657	53575	53626	71603	71603					-0.03131413207427158
YLTKEDLRV	9	Unmodified	_YLTKEDLRV_					0	0	0		ENSG00000197747|ENST00000368811|S100A10;ENST00000478574.5_1_1:151956596-151958706:-|nuORF;ENST00000478348.1_1_1:151957748-151958706:-|nuORF	ENSG00000197747|ENST00000368811|S100A10	ENSG00000197747|ENST00000368811|S100A10	MULTI-MSMS	OvCa99_classI_Rep5	1	568.8202514648438	2	568.819138	1135.62372	-0.0024151	-1.3738E-06	0.32038	0.00018224	0.31797	0.00018086	568.8189695762252	68.775	0.74483	68.775	68.523	69.268	0					51	17	4	0	0	0	0.2784	1	6530	6530		65.465	17.808	1	5013400			65001	8743	53576	53627	71604	71604					0.061336836774898984
YLTLQVGVSLA	11	Unmodified	_YLTLQVGVSLA_					0	0	0		ENST00000562503.5_3_16:57806199-57831993:-|nuORF	ENST00000562503.5_3_16:57806199-57831993:-|nuORF	ENST00000562503.5_3_16:57806199-57831993:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.296875	2	582.337164	1162.65977	1.7292	0.001007	1.037	0.00060389	2.7662	0.0016109	582.337378754434	74.901	1.0885	74.901	74.676	75.764	0					41	26	3	0	0	0	0.025315	1	7426	7426		54.776	0	1	1045900			65002	13773	53577	53628	71605	71605					0.08495140854392957
YLTLQVGVSLA	11	Unmodified	_YLTLQVGVSLA_					0	0	0		ENST00000562503.5_3_16:57806199-57831993:-|nuORF	ENST00000562503.5_3_16:57806199-57831993:-|nuORF	ENST00000562503.5_3_16:57806199-57831993:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	582.337164	1162.65977	-0.8497	-0.00049481	0.66333	0.00038628	-0.18637	-0.00010853	582.3372168664567	76.634	0.78108	74.78	74.466	75.247	-1.854	-0.018284	-0.00041918	NaN	54.776	25	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	38755			65003	13773	53577	53628							0.08495140854392957
YLTLQVGVSLA	11	Unmodified	_YLTLQVGVSLA_					0	0	0		ENST00000562503.5_3_16:57806199-57831993:-|nuORF	ENST00000562503.5_3_16:57806199-57831993:-|nuORF	ENST00000562503.5_3_16:57806199-57831993:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	582.337164	1162.65977	-2.0104	-0.0011708	1.7616	0.0010258	-0.24889	-0.00014494	582.3380983213614	76.882	1.149	74.51	74.085	75.234	-2.3715	-0.28838	0.0008599	NaN	54.776	41	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48853			65004	13773	53577	53628							0.08495140854392957
YLTLQVGVSLA	11	Unmodified	_YLTLQVGVSLA_					0	0	0		ENST00000562503.5_3_16:57806199-57831993:-|nuORF	ENST00000562503.5_3_16:57806199-57831993:-|nuORF	ENST00000562503.5_3_16:57806199-57831993:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	582.337164	1162.65977	-0.87702	-0.00051072	0.017369	1.0115E-05	-0.85965	-0.00050061	582.3368085875845	77.82	1.0651	75.003	74.536	75.601	-2.8165	0.2047	-0.0011715	NaN	54.776	26	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48498			65005	13773	53577	53628							0.08495140854392957
YLTRTSDLTD	10	Unmodified	_YLTRTSDLTD_					0	0	0			REV__ENSG00000144481|ENST00000324695|TRPM8	REV__ENSG00000144481|ENST00000324695|TRPM8	MULTI-SECPEP	OvCa99_classI_Rep5	1	593.793212890625	2	592.793318	1183.57208	1.1171	0.0006622	1.7553	0.0010406	2.8724	0.0017028	592.7945078769113	131.6	0.51697	131.6	131.25	131.76	0					15	10	2	0	0	0	0.026659	1	15259	15259		54.776	13.998	1	75802	+		65006	19914	53578	53629	71606	71606					-0.012361048070488323
YLVCLAAALL	10	Unmodified	_YLVCLAAALL_					0	0	0		MVK|p.S150L|1|0.52|ENSG00000110921|chr12:109581472-109581472|C/T|missense_variant	MVK|p.S150L|1|0.52|ENSG00000110921|chr12:109581472-109581472|C/T|missense_variant	MVK|p.S150L|1|0.52|ENSG00000110921|chr12:109581472-109581472|C/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2869873046875	2	525.306821	1048.59909	1.9342	0.0010161	4.0222	0.0021129	5.9564	0.0031289	525.3086629353153	86.954	0.45605	86.954	86.679	87.135	0					14	10	2	0	0	0	0.026839	1	9186	9186		35.201	20.537	1	234810			65007	14846	53579	53630	71607	71607					0.07673332270428546
YLVEDIQHI	9	Unmodified	_YLVEDIQHI_					0	0	0		nc|ENSG00000100918|O95072-2|REC8;ENSG00000100918|ENST00000611366|REC8	nc|ENSG00000100918|O95072-2|REC8	nc|ENSG00000100918|O95072-2|REC8	MULTI-MSMS	OvCa9_classI_Rep4_	4	565.2973022460938	2	565.298039	1128.58152	0.79653	0.00045028	-0.34192	-0.00019329	0.45461	0.00025699	565.2975758272701	104.99	1.4143	102.87	102.59	104	-2.1192					61	27	3	0	0	0	0.045281	2	9515	9515;9527		122.18	31.806	1	362860			65008	2122	53580	53631	71608;71609	71608					0.022377082691491523
YLVFACFIW	9	Unmodified	_YLVFACFIW_					0	0	0		ENST00000479415.1_1_3:167759128-167762642:-|nuORF	ENST00000479415.1_1_3:167759128-167762642:-|nuORF	ENST00000479415.1_1_3:167759128-167762642:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.326171875	2	581.293714	1160.57287	2.1133	0.0012285	-2.0444	-0.0011884	0.068894	4.0048E-05	581.2923543179282	99.507	0.78058	99.507	98.996	99.777	0					36	18	3	0	0	0	0.027462	1	10957	10957		39.021	0	1	1002600			65009	12505	53581	53632	71610	71610					-0.000989369010540031
YLVKPFKI	8	Unmodified	_YLVKPFKI_					0	0	0		tr|A0A7D7AC52|A0A7D7AC52_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17815PE=4SV=1	tr|A0A7D7AC52|A0A7D7AC52_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17815PE=4SV=1	tr|A0A7D7AC52|A0A7D7AC52_9CLOTStage0sporulationproteinAhomologOS=ClostridiumintestinaleOX=36845GN=HZF06_17815PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.2533264160156	2	504.318046	1006.62154	-1.387	-0.0006995	-3.1253	-0.0015762	-4.5124	-0.0022757	504.31652192406074	54.705	1.1752	51.457	51.132	52.307	-3.2474					43	22	3	0	0	0	0.028476	1	3473	3473		37.028	1.8278	1	62049			65010	36222	53582	53633	71611	71611					0.11849299730374696
YLVLISAVIS	10	Unmodified	_YLVLISAVIS_					0	0	0			REV__tr|A0A553SNF9|A0A553SNF9_NIACIArsenicalpumpmembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_24275PE=3SV=1	REV__tr|A0A553SNF9|A0A553SNF9_NIACIArsenicalpumpmembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_24275PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	540.2840576171875	2	539.33135	1076.64815	0.8519	0.00045945	-3.8958	-0.0021011	-3.0439	-0.0016417	539.3290719833233	90.73	0.65143	89.428	89.077	89.728	-1.302					19	12	2	0	0	0	0.027021	1	8047	8047		21.96	1.4781	1	26366	+		65011	30419	53583	53634	71612	71612					0.11288943831050346
YLVNFRCCR	9	Unmodified	_YLVNFRCCR_					0	0	0		nc|ENSG00000171053|Q8WXA2-2|PATE1;ENSG00000171053|ENST00000305738|PATE1	nc|ENSG00000171053|Q8WXA2-2|PATE1	nc|ENSG00000171053|Q8WXA2-2|PATE1	MULTI-MSMS	OvCa99_classI_Rep5	1	587.2894287109375	2	587.286428	1172.5583	0.65315	0.00038359	3.7841	0.0022223	4.4372	0.0026059	587.2885941998913	158.76	0.91774	158.76	158.51	159.42	0					30	18	2	0	0	0	0.32337	1	18609	18609		60.294	2.064	1	301410			65012	7165	53584	53635	71613	71613					-0.021073323208383954
YLVSDLLLM	9	Oxidation (M)	_YLVSDLLLM(Oxidation (M))_		YLVSDLLLM(1)		YLVSDLLLM(48)	0	0	1			REV__ENST00000563623.5_1_16:2339371-2378589:-|nuORF	REV__ENST00000563623.5_1_16:2339371-2378589:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	542.7991943359375	2	541.793743	1081.57293	2.4427	0.0013234	4.3929	0.00238	6.8356	0.0037035	541.7972697958703	106.29	1.3925	106.29	105.92	107.31	0					94	31	6	0	0	0	0.44294	1	11995	11995		47.916	9.1095	1	2576100			65013	21325	53585	53636	71614	71614		495			0.035410183083058655
YLVTALIKDK	10	Unmodified	_YLVTALIKDK_					0	0	0		ENSG00000168802|ENST00000448552|CHTF8	ENSG00000168802|ENST00000448552|CHTF8	ENSG00000168802|ENST00000448552|CHTF8	MULTI-SECPEP	OvCa99_classI_Rep5	1	583.3049926757812	2	582.355357	1162.69616	3.0917	0.0018005	-2.8641	-0.0016679	0.22766	0.00013258	582.8553923686369	88.109	0.2092	88.109	88.003	88.212	0					6	4	2	0	0	0	0.026826	1	9343	9343		52.937	12.159	1	76180			65014	6943	53586	53637	71615	71615					0.12132017751082458
YLVTAVNNPK	10	Unmodified	_YLVTAVNNPK_					0	0	0		ICMT|p.S118I|1|0.1|ENSG00000116237|chr1:6233575-6233575|C/A|missense_variant;ENSG00000116237|ENST00000343813|ICMT	ICMT|p.S118I|1|0.1|ENSG00000116237|chr1:6233575-6233575|C/A|missense_variant	ICMT|p.S118I|1|0.1|ENSG00000116237|chr1:6233575-6233575|C/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.3086547851562	2	559.813856	1117.61316	1.7052	0.00095462	3.766	0.0021083	5.4712	0.0030629	559.8160408232393	143.18	4.5258	143.18	142.44	146.96	0					125	92	2	0	0	0	0.026936	1	17148	17148		74.255	2.3776	1	92918			65015	3166	53587	53638	71616	71616					0.05905701023084475
YLVTKVVAV	9	Unmodified	_YLVTKVVAV_					0	0	0		ENSG00000261934|ENST00000573521|PCDHGA9;nc|ENSG00000261934|Q9Y5G4-2|PCDHGA9;PCDHB7|p.D593G|1|0.22|ENSG00000113212|chr5:141174613-141174613|A/G|missense_variant;ENSG00000120324|ENST00000239446|PCDHB10;ENSG00000253767|ENST00000398604|PCDHGA8;ENSG00000262209|ENST00000576222|PCDHGB3;ENSG00000254221|ENST00000523390|PCDHGB1;ENSG00000253953|ENST00000519479|PCDHGB4;nc|ENSG00000253873|Q9Y5H2-2|PCDHGA11;nc|ENSG00000253767|Q9Y5G5-2|PCDHGA8;ENSG00000171815|ENST00000306549|PCDHB1;nc|ENSG00000262209|Q9Y5G1-2|PCDHGB3;nc|ENSG00000254221|Q9Y5G3-2|PCDHGB1;nc|ENSG00000253953|Q9UN71-2|PCDHGB4;ENSG00000120322|ENST00000239444|PCDHB8;ENSG00000120327|ENST00000239449|PCDHB14;PCDHB13|p.P582Q|1|0.23|ENSG00000187372|chr5:141215868-141215868|C/A|missense_variant;ENSG00000197479|ENST00000354757|PCDHB11;ENSG00000113205|ENST00000231130|PCDHB3;ENSG00000081818|ENST00000194152|PCDHB4;ENSG00000120328|ENST00000239450|PCDHB12;ENSG00000113209|ENST00000231134|PCDHB5;ENSG00000113212|ENST00000231137|PCDHB7;nc|ENSG00000253873|Q9Y5H2-3|PCDHGA11;nc|ENSG00000120327|Q9Y5E9-2|PCDHB14;ENST00000502926.1_2_5:140806427-140807822:+|nuORF;nc|ENSG00000120328|Q9Y5F1-2|PCDHB12;nc|ENSG00000197479|Q9Y5F2-2|PCDHB11;chr5:141135289-141136642|292|13.66|0.3|5.49|+|ENST00000623915|PCDHB5,PCDHB5;ENSG00000253873|ENST00000398587|PCDHGA11;nc|ENSG00000290894|Q96TA0|PCDHB18P;PCDHGA7|p.L604Ifs*113|1|0.17|ENSG00000253537|chr5:141384708-141384709|-/ATAGACGTGGAAATAATAGATATTAATGACAA|frameshift_variant;nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7;ENSG00000253537|ENST00000518325|PCDHGA7;nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2;nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3;ENSG00000254245|ENST00000253812|PCDHGA3;ENSG00000081853|ENST00000394576|PCDHGA2;nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;ENSG00000262576|ENST00000571252|PCDHGA4;nc|ENSG00000253159|O60330-2|PCDHGA12;ENSG00000253159|ENST00000252085|PCDHGA12;ENSG00000253485|ENST00000518069|PCDHGA5;nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5;ENSG00000113211|ENST00000231136|PCDHB6;ENSG00000187372|ENST00000341948|PCDHB13;ENSG00000112852|ENST00000194155|PCDHB2;nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7;ENSG00000254122|ENST00000398594|PCDHGB7;nc|ENSG00000276547|Q9Y5G0-2|PCDHGB5;nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6;ENSG00000276547|ENST00000617380|PCDHGB5;ENSG00000253305|ENST00000520790|PCDHGB6;ENSG00000113248|ENST00000231173|PCDHB15;ENSG00000177839|ENST00000316105|PCDHB9;ENSG00000253731|ENST00000517434|PCDHGA6;nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6;nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2;ENSG00000253910|ENST00000522605|PCDHGB2;nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1;ENSG00000204956|ENST00000517417|PCDHGA1;ENSG00000253846|ENST00000398610|PCDHGA10;nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10;ENSG00000272674|ENST00000609684|PCDHB16	ENSG00000261934|ENST00000573521|PCDHGA9;nc|ENSG00000290894|Q96TA0|PCDHB18P;PCDHGA7|p.L604Ifs*113|1|0.17|ENSG00000253537|chr5:141384708-141384709|-/ATAGACGTGGAAATAATAGATATTAATGACAA|frameshift_variant;nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;nc|ENSG00000253159|O60330-2|PCDHGA12;ENSG00000253485|ENST00000518069|PCDHGA5;ENSG00000113211|ENST00000231136|PCDHB6;ENSG00000187372|ENST00000341948|PCDHB13;ENSG00000112852|ENST00000194155|PCDHB2;nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7;ENSG00000113248|ENST00000231173|PCDHB15;ENSG00000177839|ENST00000316105|PCDHB9;ENSG00000253731|ENST00000517434|PCDHGA6;nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2;nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1;ENSG00000253846|ENST00000398610|PCDHGA10;ENSG00000272674|ENST00000609684|PCDHB16	ENSG00000113211|ENST00000231136|PCDHB6	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.3134765625	2	496.312961	990.611368	-0.80027	-0.00039718	0.29416	0.00014599	-0.50611	-0.00025119	496.3131250572256	94.968	1.9676	92.5	92.21	94.177	-2.4685					72	38	3	0	0	0	0.1804	1	8340	8340		79.713	24.818	1	226300			65016	2954;9433;2932;15397;9509;9425;9432;9440;9443;9041;9438;9505;2955;9439;8398;7714;9554	53588	53639	71617	71617					0.11568692005130288
YLVTKVVAV	9	Unmodified	_YLVTKVVAV_					0	0	0		ENSG00000261934|ENST00000573521|PCDHGA9;nc|ENSG00000261934|Q9Y5G4-2|PCDHGA9;PCDHB7|p.D593G|1|0.22|ENSG00000113212|chr5:141174613-141174613|A/G|missense_variant;ENSG00000120324|ENST00000239446|PCDHB10;ENSG00000253767|ENST00000398604|PCDHGA8;ENSG00000262209|ENST00000576222|PCDHGB3;ENSG00000254221|ENST00000523390|PCDHGB1;ENSG00000253953|ENST00000519479|PCDHGB4;nc|ENSG00000253873|Q9Y5H2-2|PCDHGA11;nc|ENSG00000253767|Q9Y5G5-2|PCDHGA8;ENSG00000171815|ENST00000306549|PCDHB1;nc|ENSG00000262209|Q9Y5G1-2|PCDHGB3;nc|ENSG00000254221|Q9Y5G3-2|PCDHGB1;nc|ENSG00000253953|Q9UN71-2|PCDHGB4;ENSG00000120322|ENST00000239444|PCDHB8;ENSG00000120327|ENST00000239449|PCDHB14;PCDHB13|p.P582Q|1|0.23|ENSG00000187372|chr5:141215868-141215868|C/A|missense_variant;ENSG00000197479|ENST00000354757|PCDHB11;ENSG00000113205|ENST00000231130|PCDHB3;ENSG00000081818|ENST00000194152|PCDHB4;ENSG00000120328|ENST00000239450|PCDHB12;ENSG00000113209|ENST00000231134|PCDHB5;ENSG00000113212|ENST00000231137|PCDHB7;nc|ENSG00000253873|Q9Y5H2-3|PCDHGA11;nc|ENSG00000120327|Q9Y5E9-2|PCDHB14;ENST00000502926.1_2_5:140806427-140807822:+|nuORF;nc|ENSG00000120328|Q9Y5F1-2|PCDHB12;nc|ENSG00000197479|Q9Y5F2-2|PCDHB11;chr5:141135289-141136642|292|13.66|0.3|5.49|+|ENST00000623915|PCDHB5,PCDHB5;ENSG00000253873|ENST00000398587|PCDHGA11;nc|ENSG00000290894|Q96TA0|PCDHB18P;PCDHGA7|p.L604Ifs*113|1|0.17|ENSG00000253537|chr5:141384708-141384709|-/ATAGACGTGGAAATAATAGATATTAATGACAA|frameshift_variant;nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7;ENSG00000253537|ENST00000518325|PCDHGA7;nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2;nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3;ENSG00000254245|ENST00000253812|PCDHGA3;ENSG00000081853|ENST00000394576|PCDHGA2;nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;ENSG00000262576|ENST00000571252|PCDHGA4;nc|ENSG00000253159|O60330-2|PCDHGA12;ENSG00000253159|ENST00000252085|PCDHGA12;ENSG00000253485|ENST00000518069|PCDHGA5;nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5;ENSG00000113211|ENST00000231136|PCDHB6;ENSG00000187372|ENST00000341948|PCDHB13;ENSG00000112852|ENST00000194155|PCDHB2;nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7;ENSG00000254122|ENST00000398594|PCDHGB7;nc|ENSG00000276547|Q9Y5G0-2|PCDHGB5;nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6;ENSG00000276547|ENST00000617380|PCDHGB5;ENSG00000253305|ENST00000520790|PCDHGB6;ENSG00000113248|ENST00000231173|PCDHB15;ENSG00000177839|ENST00000316105|PCDHB9;ENSG00000253731|ENST00000517434|PCDHGA6;nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6;nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2;ENSG00000253910|ENST00000522605|PCDHGB2;nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1;ENSG00000204956|ENST00000517417|PCDHGA1;ENSG00000253846|ENST00000398610|PCDHGA10;nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10;ENSG00000272674|ENST00000609684|PCDHB16	ENSG00000261934|ENST00000573521|PCDHGA9;nc|ENSG00000290894|Q96TA0|PCDHB18P;PCDHGA7|p.L604Ifs*113|1|0.17|ENSG00000253537|chr5:141384708-141384709|-/ATAGACGTGGAAATAATAGATATTAATGACAA|frameshift_variant;nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;nc|ENSG00000253159|O60330-2|PCDHGA12;ENSG00000253485|ENST00000518069|PCDHGA5;ENSG00000113211|ENST00000231136|PCDHB6;ENSG00000187372|ENST00000341948|PCDHB13;ENSG00000112852|ENST00000194155|PCDHB2;nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7;ENSG00000113248|ENST00000231173|PCDHB15;ENSG00000177839|ENST00000316105|PCDHB9;ENSG00000253731|ENST00000517434|PCDHGA6;nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2;nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1;ENSG00000253846|ENST00000398610|PCDHGA10;ENSG00000272674|ENST00000609684|PCDHB16	ENSG00000113211|ENST00000231136|PCDHB6	MULTI-MATCH	OvCa99_classI_Rep5	1		2	496.312961	990.611368	1.847	0.00091671	-0.030997	-1.5384E-05	1.8161	0.00090133	496.3127153596695	92.685	0.5835	92.685	92.428	93.011	0	0.16269	-0.00037246	NaN	79.713	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	441150			65017	2954;9433;2932;15397;9509;9425;9432;9440;9443;9041;9438;9505;2955;9439;8398;7714;9554	53588	53639							0.11568692005130288
YLVTKVVAV	9	Unmodified	_YLVTKVVAV_					0	0	0		ENSG00000261934|ENST00000573521|PCDHGA9;nc|ENSG00000261934|Q9Y5G4-2|PCDHGA9;PCDHB7|p.D593G|1|0.22|ENSG00000113212|chr5:141174613-141174613|A/G|missense_variant;ENSG00000120324|ENST00000239446|PCDHB10;ENSG00000253767|ENST00000398604|PCDHGA8;ENSG00000262209|ENST00000576222|PCDHGB3;ENSG00000254221|ENST00000523390|PCDHGB1;ENSG00000253953|ENST00000519479|PCDHGB4;nc|ENSG00000253873|Q9Y5H2-2|PCDHGA11;nc|ENSG00000253767|Q9Y5G5-2|PCDHGA8;ENSG00000171815|ENST00000306549|PCDHB1;nc|ENSG00000262209|Q9Y5G1-2|PCDHGB3;nc|ENSG00000254221|Q9Y5G3-2|PCDHGB1;nc|ENSG00000253953|Q9UN71-2|PCDHGB4;ENSG00000120322|ENST00000239444|PCDHB8;ENSG00000120327|ENST00000239449|PCDHB14;PCDHB13|p.P582Q|1|0.23|ENSG00000187372|chr5:141215868-141215868|C/A|missense_variant;ENSG00000197479|ENST00000354757|PCDHB11;ENSG00000113205|ENST00000231130|PCDHB3;ENSG00000081818|ENST00000194152|PCDHB4;ENSG00000120328|ENST00000239450|PCDHB12;ENSG00000113209|ENST00000231134|PCDHB5;ENSG00000113212|ENST00000231137|PCDHB7;nc|ENSG00000253873|Q9Y5H2-3|PCDHGA11;nc|ENSG00000120327|Q9Y5E9-2|PCDHB14;ENST00000502926.1_2_5:140806427-140807822:+|nuORF;nc|ENSG00000120328|Q9Y5F1-2|PCDHB12;nc|ENSG00000197479|Q9Y5F2-2|PCDHB11;chr5:141135289-141136642|292|13.66|0.3|5.49|+|ENST00000623915|PCDHB5,PCDHB5;ENSG00000253873|ENST00000398587|PCDHGA11;nc|ENSG00000290894|Q96TA0|PCDHB18P;PCDHGA7|p.L604Ifs*113|1|0.17|ENSG00000253537|chr5:141384708-141384709|-/ATAGACGTGGAAATAATAGATATTAATGACAA|frameshift_variant;nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7;ENSG00000253537|ENST00000518325|PCDHGA7;nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2;nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3;ENSG00000254245|ENST00000253812|PCDHGA3;ENSG00000081853|ENST00000394576|PCDHGA2;nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;ENSG00000262576|ENST00000571252|PCDHGA4;nc|ENSG00000253159|O60330-2|PCDHGA12;ENSG00000253159|ENST00000252085|PCDHGA12;ENSG00000253485|ENST00000518069|PCDHGA5;nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5;ENSG00000113211|ENST00000231136|PCDHB6;ENSG00000187372|ENST00000341948|PCDHB13;ENSG00000112852|ENST00000194155|PCDHB2;nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7;ENSG00000254122|ENST00000398594|PCDHGB7;nc|ENSG00000276547|Q9Y5G0-2|PCDHGB5;nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6;ENSG00000276547|ENST00000617380|PCDHGB5;ENSG00000253305|ENST00000520790|PCDHGB6;ENSG00000113248|ENST00000231173|PCDHB15;ENSG00000177839|ENST00000316105|PCDHB9;ENSG00000253731|ENST00000517434|PCDHGA6;nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6;nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2;ENSG00000253910|ENST00000522605|PCDHGB2;nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1;ENSG00000204956|ENST00000517417|PCDHGA1;ENSG00000253846|ENST00000398610|PCDHGA10;nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10;ENSG00000272674|ENST00000609684|PCDHB16	ENSG00000261934|ENST00000573521|PCDHGA9;nc|ENSG00000290894|Q96TA0|PCDHB18P;PCDHGA7|p.L604Ifs*113|1|0.17|ENSG00000253537|chr5:141384708-141384709|-/ATAGACGTGGAAATAATAGATATTAATGACAA|frameshift_variant;nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;nc|ENSG00000253159|O60330-2|PCDHGA12;ENSG00000253485|ENST00000518069|PCDHGA5;ENSG00000113211|ENST00000231136|PCDHB6;ENSG00000187372|ENST00000341948|PCDHB13;ENSG00000112852|ENST00000194155|PCDHB2;nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7;ENSG00000113248|ENST00000231173|PCDHB15;ENSG00000177839|ENST00000316105|PCDHB9;ENSG00000253731|ENST00000517434|PCDHGA6;nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2;nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1;ENSG00000253846|ENST00000398610|PCDHGA10;ENSG00000272674|ENST00000609684|PCDHB16	ENSG00000113211|ENST00000231136|PCDHB6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	496.312961	990.611368	-0.041003	-2.035E-05	-0.42726	-0.00021205	-0.46826	-0.0002324	496.3127468833041	93.59	1.4326	92.422	92.105	93.538	-1.168	-0.099966	-0.0007658	NaN	79.713	64	27	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	169020			65018	2954;9433;2932;15397;9509;9425;9432;9440;9443;9041;9438;9505;2955;9439;8398;7714;9554	53588	53639							0.11568692005130288
YLVTKVVAV	9	Unmodified	_YLVTKVVAV_					0	0	0		ENSG00000261934|ENST00000573521|PCDHGA9;nc|ENSG00000261934|Q9Y5G4-2|PCDHGA9;PCDHB7|p.D593G|1|0.22|ENSG00000113212|chr5:141174613-141174613|A/G|missense_variant;ENSG00000120324|ENST00000239446|PCDHB10;ENSG00000253767|ENST00000398604|PCDHGA8;ENSG00000262209|ENST00000576222|PCDHGB3;ENSG00000254221|ENST00000523390|PCDHGB1;ENSG00000253953|ENST00000519479|PCDHGB4;nc|ENSG00000253873|Q9Y5H2-2|PCDHGA11;nc|ENSG00000253767|Q9Y5G5-2|PCDHGA8;ENSG00000171815|ENST00000306549|PCDHB1;nc|ENSG00000262209|Q9Y5G1-2|PCDHGB3;nc|ENSG00000254221|Q9Y5G3-2|PCDHGB1;nc|ENSG00000253953|Q9UN71-2|PCDHGB4;ENSG00000120322|ENST00000239444|PCDHB8;ENSG00000120327|ENST00000239449|PCDHB14;PCDHB13|p.P582Q|1|0.23|ENSG00000187372|chr5:141215868-141215868|C/A|missense_variant;ENSG00000197479|ENST00000354757|PCDHB11;ENSG00000113205|ENST00000231130|PCDHB3;ENSG00000081818|ENST00000194152|PCDHB4;ENSG00000120328|ENST00000239450|PCDHB12;ENSG00000113209|ENST00000231134|PCDHB5;ENSG00000113212|ENST00000231137|PCDHB7;nc|ENSG00000253873|Q9Y5H2-3|PCDHGA11;nc|ENSG00000120327|Q9Y5E9-2|PCDHB14;ENST00000502926.1_2_5:140806427-140807822:+|nuORF;nc|ENSG00000120328|Q9Y5F1-2|PCDHB12;nc|ENSG00000197479|Q9Y5F2-2|PCDHB11;chr5:141135289-141136642|292|13.66|0.3|5.49|+|ENST00000623915|PCDHB5,PCDHB5;ENSG00000253873|ENST00000398587|PCDHGA11;nc|ENSG00000290894|Q96TA0|PCDHB18P;PCDHGA7|p.L604Ifs*113|1|0.17|ENSG00000253537|chr5:141384708-141384709|-/ATAGACGTGGAAATAATAGATATTAATGACAA|frameshift_variant;nc|ENSG00000253537|Q9Y5G6-2|PCDHGA7;ENSG00000253537|ENST00000518325|PCDHGA7;nc|ENSG00000081853|Q9Y5H1-2|PCDHGA2;nc|ENSG00000254245|Q9Y5H0-2|PCDHGA3;ENSG00000254245|ENST00000253812|PCDHGA3;ENSG00000081853|ENST00000394576|PCDHGA2;nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;ENSG00000262576|ENST00000571252|PCDHGA4;nc|ENSG00000253159|O60330-2|PCDHGA12;ENSG00000253159|ENST00000252085|PCDHGA12;ENSG00000253485|ENST00000518069|PCDHGA5;nc|ENSG00000253485|Q9Y5G8-2|PCDHGA5;ENSG00000113211|ENST00000231136|PCDHB6;ENSG00000187372|ENST00000341948|PCDHB13;ENSG00000112852|ENST00000194155|PCDHB2;nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7;ENSG00000254122|ENST00000398594|PCDHGB7;nc|ENSG00000276547|Q9Y5G0-2|PCDHGB5;nc|ENSG00000253305|Q9Y5F9-2|PCDHGB6;ENSG00000276547|ENST00000617380|PCDHGB5;ENSG00000253305|ENST00000520790|PCDHGB6;ENSG00000113248|ENST00000231173|PCDHB15;ENSG00000177839|ENST00000316105|PCDHB9;ENSG00000253731|ENST00000517434|PCDHGA6;nc|ENSG00000253731|Q9Y5G7-2|PCDHGA6;nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2;ENSG00000253910|ENST00000522605|PCDHGB2;nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1;ENSG00000204956|ENST00000517417|PCDHGA1;ENSG00000253846|ENST00000398610|PCDHGA10;nc|ENSG00000253846|Q9Y5H3-2|PCDHGA10;ENSG00000272674|ENST00000609684|PCDHB16	ENSG00000261934|ENST00000573521|PCDHGA9;nc|ENSG00000290894|Q96TA0|PCDHB18P;PCDHGA7|p.L604Ifs*113|1|0.17|ENSG00000253537|chr5:141384708-141384709|-/ATAGACGTGGAAATAATAGATATTAATGACAA|frameshift_variant;nc|ENSG00000262576|Q9Y5G9-2|PCDHGA4;nc|ENSG00000253159|O60330-2|PCDHGA12;ENSG00000253485|ENST00000518069|PCDHGA5;ENSG00000113211|ENST00000231136|PCDHB6;ENSG00000187372|ENST00000341948|PCDHB13;ENSG00000112852|ENST00000194155|PCDHB2;nc|ENSG00000254122|Q9Y5F8-2|PCDHGB7;ENSG00000113248|ENST00000231173|PCDHB15;ENSG00000177839|ENST00000316105|PCDHB9;ENSG00000253731|ENST00000517434|PCDHGA6;nc|ENSG00000253910|Q9Y5G2-2|PCDHGB2;nc|ENSG00000204956|Q9Y5H4-2|PCDHGA1;ENSG00000253846|ENST00000398610|PCDHGA10;ENSG00000272674|ENST00000609684|PCDHB16	ENSG00000113211|ENST00000231136|PCDHB6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	496.312961	990.611368	-0.79842	-0.00039626	0.80105	0.00039757	0.0026286	1.3046E-06	496.3132588185189	94.378	1.5587	92.482	92.204	93.763	-1.8956	-0.040006	0.00045344	NaN	79.713	59	30	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	257980			65019	2954;9433;2932;15397;9509;9425;9432;9440;9443;9041;9438;9505;2955;9439;8398;7714;9554	53588	53639							0.11568692005130288
YLVVKIEKV	9	Unmodified	_YLVVKIEKV_					0	0	0		nc|ENSG00000107099|Q8NF50-4|DOCK8;nc|ENSG00000107099|Q8NF50-3|DOCK8;nc|ENSG00000107099|Q8NF50-2|DOCK8;ENSG00000107099|ENST00000432829|DOCK8;DOCK8|p.R493Nfs*16|1|0.09|ENSG00000107099|chr9:339061-339061|G/-|frameshift_variant;ENST00000454469.6_1_9:214976-340322:+|nuORF;ENST00000495184.5_1_9:286487-368312:+|nuORF	nc|ENSG00000107099|Q8NF50-4|DOCK8	nc|ENSG00000107099|Q8NF50-4|DOCK8	MULTI-MSMS	OvCa99_classI_Rep5	1	546.3497314453125	2	545.847167	1089.67978	1.7274	0.00094291	0.17891	9.7658E-05	1.9063	0.0010406	545.8469991986208	79.581	0.67953	79.581	79.352	80.031	0					29	16	3	0	0	0	0.075543	1	8131	8131		104.06	29.802	1	1555600			65020	2585	53589	53640	71618	71618					0.13852936584976305
YLVVPSGAYI	10	Unmodified	_YLVVPSGAYI_					0	0	0		ENSG00000157093|ENST00000287748|LYZL4	ENSG00000157093|ENST00000287748|LYZL4	ENSG00000157093|ENST00000287748|LYZL4	MULTI-MSMS	OvCa99_classI_Rep5	1	541.3045654296875	2	541.30005	1080.58555	1.3904	0.00075262	3.6199	0.0019594	5.0103	0.002712	541.301933815458	105.83	0.69939	105.83	105.53	106.23	0					28	15	3	0	0	0	0.41846	1	11899	11899		65.803	9.0821	1	1016800			65021	5873	53590	53641	71619	71619					0.04847797762840855
YLWDFHKYRRY	11	Unmodified	_YLWDFHKYRRY_					0	0	0			REV__ENSG00000173548|ENST00000308527|SNX33	REV__ENSG00000173548|ENST00000308527|SNX33	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.3215942382812	3	549.612404	1645.81538	-1.0243	-0.000563	3.9618	0.0021774	2.9374	0.0016145	549.6144252560521	36.451	0.26735	36.451	36.351	36.618	0					8	5	2	0	0	0	0.026549	1	1922	1922		3.6191	2.2971	1	64316	+		65022	21783	53591	53642	71620	71620					0.018306044285054668
YLWDSSSFLL	10	Unmodified	_YLWDSSSFLL_					0	0	0			REV__tr|A0A553SN20|A0A553SN20_NIACIDUF2157domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23520PE=4SV=1	REV__tr|A0A553SN20|A0A553SN20_NIACIDUF2157domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_23520PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	616.3096313476562	2	615.805697	1229.59684	2.782	0.0017132	-3.0654	-0.0018877	-0.28339	-0.00017451	615.8039201819499	130.4	1.0325	128.93	128.66	129.69	-1.4779					43	20	3	0	0	0	0.76627	1	12559	12559		23.042	1.3402	1	65936	+		65023	30388	53592	53643	71621	71621					-0.008774249336738649
YLWRTSLYL	9	Unmodified	_YLWRTSLYL_					0	0	0		ENST00000551123.5_1_12:98989412-98995303:+|nuORF;ENST00000546766.5_1_12:98989476-98995303:+|nuORF;ENSG00000075415|ENST00000552981|SLC25A3;nc|ENSG00000075415|Q00325|SLC25A3	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	ENST00000551123.5_1_12:98989412-98995303:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	608.3356323242188	2	607.832049	1213.64954	1.1458	0.00069648	1.7811	0.0010826	2.927	0.0017791	607.8326842713234	123.93	0.58981	123.93	123.69	124.28	0					33	12	4	0	0	0	0.3076	1	14299	14299		62.107	7.3311	1	348190			65024	1531	53593	53644	71622	71622					0.051265779198274686
YLWSILFL	8	Unmodified	_YLWSILFL_					0	0	0			REV__tr|A0A7D6ZJV4|A0A7D6ZJV4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10030PE=4SV=1	REV__tr|A0A7D6ZJV4|A0A7D6ZJV4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10030PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.3096313476562	2	527.802229	1053.5899	1.9812	0.0010457	-4.0017	-0.0021121	-2.0205	-0.0010664	528.3026939686837	85.047	0.74938	85.047	84.631	85.38	0					27	12	3	0	0	0	0.028476	1	8875	8875		35.201	0	1	643470	+		65025	32093	53594	53645	71623	71623					0.06525306976436696
YLWTVLAVI	9	Unmodified	_YLWTVLAVI_					0	0	0			REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.7462564563017426|0.2188578600898351|3.0|428.0|44|2|sense	REV__L1ME1_dup14741|chr8:25510836-25512219:-|1.7462564563017426|0.2188578600898351|3.0|428.0|44|2|sense	MULTI-MSMS	OvCa9_classI_Rep2	2	539.31884765625	2	539.320786	1076.62702	-1.4496	-0.00078182	-2.8818	-0.0015542	-4.3314	-0.002336	539.319203749162	99.493	1.6872	98.662	98.368	100.06	-0.83051					67	33	4	0	0	0	0.44294	1	9067	9067		47.916	5.0513	1	253360	+		65026	28438	53595	53646	71624	71624					0.0917697852216861
YLWYLRLLRLL	11	Unmodified	_YLWYLRLLRLL_					0	0	0		nc|ENSG00000160145|O60229-2|KALRN;nc|ENSG00000160145|O60229|KALRN;ENST00000488825.5_1_3:123813684-123881061:+|nuORF	nc|ENSG00000160145|O60229-2|KALRN	nc|ENSG00000160145|O60229-2|KALRN	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.2662353515625	3	507.981657	1520.92314	2.1357	0.0010849	-2.9275	-0.0014871	-0.79177	-0.0004022	507.9799589280129	85.035	0.49161	85.035	84.8	85.292	0					28	11	3	0	0	0	0.026364	1	8874	8874		18.531	5.5736	1	307970			65027	15127	53596	53647	71625	71625					0.18351601029871745
YLYEKANTP	9	Unmodified	_YLYEKANTP_					0	0	0		nc|ENSG00000114346|Q9H8V3-2|ECT2;nc|ENSG00000114346|Q9H8V3-4|ECT2;chr3:172752472-172754509|367|12.11|0.58|4.37|+|ENST00000540509|ECT2,ECT2;chr3:172750857-172752150|383|11.5|0.42|4.78|+|ENST00000540509|ECT2,ECT2;ENSG00000114346|ENST00000392692|ECT2;nc|ENSG00000114346|Q9H8V3-3|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	nc|ENSG00000114346|Q9H8V3-2|ECT2	MULTI-SECPEP	OvCa99_classI_Rep5	1	549.8126831054688	2	549.776939	1097.53933	-0.073945	-4.0653E-05	-0.069502	-3.821E-05	-0.14345	-7.8864E-05	549.776331708367	62.269	0.86458	62.269	61.912	62.777	0					53	20	4	0	0	0	0.027455	1	5585	5585		42.396	0	1	3800600			65028	478	53597	53648	71626	71626					-0.005542671392504417
YLYFLPNN	8	Unmodified	_YLYFLPNN_					0	0	0		tr|A0A7D6ZJ81|A0A7D6ZJ81_9CLOTGer(X)CfamilysporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07605PE=3SV=1	tr|A0A7D6ZJ81|A0A7D6ZJ81_9CLOTGer(X)CfamilysporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07605PE=3SV=1	tr|A0A7D6ZJ81|A0A7D6ZJ81_9CLOTGer(X)CfamilysporegerminationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_07605PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	521.3072509765625	2	522.263468	1042.51238	-0.21697	-0.00011331	-0.0088409	-4.6173E-06	-0.22581	-0.00011793	522.2620860699512	90.41	0.76266	87.835	87.551	88.313	-2.575					21	14	2	0	0	0	0.028476	1	7836	7836		37.028	0	1	23120			65029	35637	53598	53649	71627	71627					-0.0071733095976469485
YLYGIRVEV	9	Unmodified	_YLYGIRVEV_					0	0	0		ENSG00000204310|ENST00000375107|AGPAT1	ENSG00000204310|ENST00000375107|AGPAT1	ENSG00000204310|ENST00000375107|AGPAT1	MULTI-MSMS	OvCa99_classI_Rep5	1	556.31298828125	2	556.310949	1110.60735	1.5352	0.00085406	2.9361	0.0016334	4.4713	0.0024874	556.3110177123466	109.73	1.1154	109.73	109.19	110.31	0					65	24	4	0	0	0	0.070405	1	12438	12438		107.01	55.815	1	1398400			65030	8968	53599	53650	71628	71628					0.0564660251143323
YLYGVWSQ	8	Unmodified	_YLYGVWSQ_					0	0	0			REV__tr|A0A7D6W0Y9|A0A7D6W0Y9_9CLOTSEL1-likerepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01290PE=4SV=1	REV__tr|A0A7D6W0Y9|A0A7D6W0Y9_9CLOTSEL1-likerepeatproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01290PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.2731628417969	2	508.247818	1014.48108	-0.61973	-0.00031498	-1.5873	-0.00080674	-2.207	-0.0011217	508.7489356019622	36.227	0.32275	36.227	36.074	36.397	0					9	6	2	0	0	0	0.028476	1	1880	1880		13.775	0	1	22236	+		65031	31869	53600	53651	71629	71629					-0.02557903993852051
YLYKAKLLG	9	Unmodified	_YLYKAKLLG_					0	0	0			REV__nc|ENSG00000222011|Q8N0U4-3|FAM185A	REV__nc|ENSG00000222011|Q8N0U4-3|FAM185A	MULTI-SECPEP	OvCa99_classI_Rep5	1	535.8187866210938	2	534.826235	1067.63792	0.53754	0.00028749	-0.52517	-0.00028088	0.012369	6.6154E-06	534.826050132395	161.11	0.95575	161.11	160.66	161.61	0					29	18	4	0	0	0	0.027462	1	18932	18932		12.959	0	1	59569	+		65032	23351	53601	53652	71630	71630					0.10680380896474162
YLYLIYDL	8	Unmodified	_YLYLIYDL_					0	0	0		tr|A0A7D6ZWE6|A0A7D6ZWE6_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=HZF06_07575PE=4SV=1	tr|A0A7D6ZWE6|A0A7D6ZWE6_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=HZF06_07575PE=4SV=1	tr|A0A7D6ZWE6|A0A7D6ZWE6_9CLOTDNAmismatchrepairproteinMutSOS=ClostridiumintestinaleOX=36845GN=HZF06_07575PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	538.7823486328125	2	538.289151	1074.56375	0.075002	4.0373E-05	2.6857	0.0014457	2.7607	0.0014861	538.2901257394808	105.43	0.26311	105.43	105.22	105.49	0					8	5	2	0	0	0	0.028476	1	11814	11814		46.766	13.954	1	136360			65033	35839	53602	53653	71631	71631					0.02944993014261854
YLYMRDLGKSL	11	Unmodified	_YLYMRDLGKSL_					0	0	0		tr|A0A553SG89|A0A553SG89_NIACIPolyprenylsynthetasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10395PE=4SV=1	tr|A0A553SG89|A0A553SG89_NIACIPolyprenylsynthetasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10395PE=4SV=1	tr|A0A553SG89|A0A553SG89_NIACIPolyprenylsynthetasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_10395PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	454.2494812011719	3	453.576079	1357.70641	0.0065287	2.9612E-06	2.6667	0.0012095	2.6732	0.0012125	453.57670135158435	55.814	1.012	52.52	52.26	53.272	-3.2944					41	19	4	0	0	0	0.02595	1	3622	3622		21.032	0	1	62325			65034	33128	53603	53654	71632	71632					0.04186257413994099
YLYPDITRL	9	Unmodified	_YLYPDITRL_					0	0	0		ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	MULTI-MSMS	OvCa99_classI_Rep5	1	577.3162841796875	2	577.316232	1152.61791	2.1869	0.0012625	-2.3042	-0.0013303	-0.11734	-6.774E-05	577.3159211924545	116.24	1.18	116.24	115.73	116.91	0					79	25	5	0	0	0	0.1804	2	13321	13297;13321		79.713	10.926	1	4068600			65035	4062	53604	53655	71633;71634	71634					0.047705851658292886
YLYPDITRL	9	Unmodified	_YLYPDITRL_					0	0	0		ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	MULTI-MATCH	OvCa9_classI_Rep2	2		2	577.316232	1152.61791	-1.3573	-0.0007836	1.031	0.00059523	-0.32629	-0.00018837	577.3168956916567	116.01	0.99055	115.89	115.49	116.48	-0.11777	0.0079015	0.00054836	NaN	79.713	37	19	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43795			65036	4062	53604	53655							0.047705851658292886
YLYPDITRL	9	Unmodified	_YLYPDITRL_					0	0	0		ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	MULTI-MATCH	OvCa9_classI_Rep3	3		2	577.316232	1152.61791	-1.5419	-0.00089014	1.2254	0.00070743	-0.31647	-0.0001827	577.316692686777	116.76	0.84186	115.72	115.49	116.33	-1.0414	-0.16345	0.00077277	NaN	79.713	33	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	58158			65037	4062	53604	53655							0.047705851658292886
YLYPDITRL	9	Unmodified	_YLYPDITRL_					0	0	0		ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	ENSG00000131389|ENST00000622186|SLC6A6	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	577.316232	1152.61791	-0.82494	-0.00047625	0.7186	0.00041486	-0.10634	-6.1392E-05	577.3164629034243	117.05	0.7851	115.68	115.4	116.19	-1.3645	-0.20263	0.00018762	NaN	79.713	33	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66533			65038	4062	53604	53655							0.047705851658292886
YLYRYSMK	8	Unmodified	_YLYRYSMK_					0	0	0		tr|A0A553SFB2|A0A553SFB2_NIACICationtransporterOS=NialliacirculansOX=1397GN=CEQ21_08420PE=4SV=1	tr|A0A553SFB2|A0A553SFB2_NIACICationtransporterOS=NialliacirculansOX=1397GN=CEQ21_08420PE=4SV=1	tr|A0A553SFB2|A0A553SFB2_NIACICationtransporterOS=NialliacirculansOX=1397GN=CEQ21_08420PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	562.7522583007812	2	562.283877	1122.5532	3.2062	0.0018028	1.3233	0.00074408	4.5295	0.0025469	562.2844834830138	86.573	0.66129	86.573	86.311	86.972	0					32	15	3	0	0	0	0.028476	1	9115	9115		55.504	7.5886	1	1742500			65039	33017	53605	53656	71635	71635					-0.0031731291180676635
YLYSCGDETK	10	Unmodified	_YLYSCGDETK_					0	0	0		SPRED1|p.C418Nfs*10|1|0.04|ENSG00000166068|chr15:38351580-38351581|-/AACGTTCTCGC|frameshift_variant;ENSG00000166068|ENST00000299084|SPRED1	SPRED1|p.C418Nfs*10|1|0.04|ENSG00000166068|chr15:38351580-38351581|-/AACGTTCTCGC|frameshift_variant	SPRED1|p.C418Nfs*10|1|0.04|ENSG00000166068|chr15:38351580-38351581|-/AACGTTCTCGC|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	589.7587890625	2	589.755346	1177.49614	2.6519	0.0015639	2.1944	0.0012942	4.8463	0.0028581	589.7565916133124	86.411	0.69598	86.411	86.192	86.888	0					48	16	4	0	0	0	0.46756	1	9109	9109		58.782	9.3404	1	2914500			65040	6633	53606	53657	71636	71636					-0.08550824978851779
YLYSKRQPT	9	Unmodified	_YLYSKRQPT_					0	0	0			REV__ENSG00000138160|ENST00000260731|KIF11	REV__ENSG00000138160|ENST00000260731|KIF11	MULTI-MSMS	OvCa99_classI_Rep5	1	578.311279296875	2	578.31148	1154.60841	0.58111	0.00033607	-0.4271	-0.000247	0.15402	8.907E-05	578.3111486146285	153.37	2.6295	153.37	152.59	155.22	0					107	54	5	0	0	0	0.61208	1	17940	17940		30.504	0.18592	1	2961600	+		65041	19516	53607	53658	71637	71637					0.037288168803115695
YLYTIIRW	8	Unmodified	_YLYTIIRW_					0	0	0			REV__nc|ENSG00000103534|Q6UXY8-2|TMC5	REV__nc|ENSG00000103534|Q6UXY8-2|TMC5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	564.325439453125	2	564.316035	1126.61752	-0.48673	-0.00027467	4.2638	0.0024061	3.777	0.0021314	564.3182264130112	126.95	0.29745	125.51	125.39	125.69	-1.4357					6	5	2	0	0	0	0.028476	1	12092	12092		24.203	0	1	8830.9	+		65042	28777	53608	53659	71638	71638					0.05927210236677638
YLYVDKNFI	9	Unmodified	_YLYVDKNFI_					0	0	0		ENSG00000100345|ENST00000216181|MYH9;MYH9|p.A1773Sfs*19|1|0.04|ENSG00000100345|chr22:36285287-36285288|-/T|frameshift_variant	ENSG00000100345|ENST00000216181|MYH9	ENSG00000100345|ENST00000216181|MYH9	MULTI-MSMS	OvCa99_classI_Rep5	1	587.8152465820312	2	587.810782	1173.60701	2.1843	0.001284	0.09435	5.546E-05	2.2787	0.0013394	587.8104913091353	108.26	1.3382	108.26	107.9	109.24	0					67	30	4	0	0	0	0.22621	1	12217	12217		71.877	18.941	1	2513600			65043	2050	53609	53660	71639	71639					0.027151827915531612
YLYVLTNHF	9	Unmodified	_YLYVLTNHF_					0	0	0		ENST00000591671.1_1_18:44660807-44662674:-|nuORF	ENST00000591671.1_1_18:44660807-44662674:-|nuORF	ENST00000591671.1_1_18:44660807-44662674:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	584.8433227539062	2	585.303124	1168.5917	0.76197	0.00044598	-3.7181	-0.0021762	-2.9561	-0.0017302	585.3009568077738	85.132	0.63319	82.486	82.263	82.896	-2.6463					27	12	3	0	0	0	0.027462	1	7189	7189		26.796	1.3459	1	194460			65044	14124	53610	53661	71640	71640					0.014143159943841965
YLYYMLLT	8	Unmodified	_YLYYMLLT_					0	0	0			REV__ENST00000171757.2_1_X:78216246-78216354:+|nuORF	REV__ENST00000171757.2_1_X:78216246-78216354:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	539.31884765625	2	540.277729	1078.54091	-1.2598	-0.00068067	2.2455	0.0012132	0.98561	0.0005325	540.278749864048	99.304	1.2442	98.451	97.647	98.891	-0.85357					32	24	2	0	0	0	0.028476	1	9067	9067		39.021	6.2091	1	40180	+		65045	23685	53611	53662	71641	71641					0.0047765062515736645
YLYYTLPTF	9	Unmodified	_YLYYTLPTF_					0	0	0		ENST00000409514.5_2_2:233446968-233447088:+|nuORF	ENST00000409514.5_2_2:233446968-233447088:+|nuORF	ENST00000409514.5_2_2:233446968-233447088:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	590.8008422851562	2	590.799883	1179.58521	1.1782	0.00069606	-3.0681	-0.0018126	-1.8899	-0.0011166	590.7983822902073	143.11	2.1741	143.11	141.83	144.01	0					96	43	3	0	0	0	0.44294	1	16756	16756		47.916	3.5384	1	172240			65046	11529	53612	53663	71642	71642					0.0026037804298084666
YMASQPKNK	9	Unmodified	_YMASQPKNK_					0	0	0		ENSG00000115944|ENST00000234301|COX7A2L;ENST00000464443.5_1_2:42578361-42588194:-|nuORF	ENSG00000115944|ENST00000234301|COX7A2L	ENSG00000115944|ENST00000234301|COX7A2L	MULTI-MSMS	OvCa99_classI_Rep5	1	533.7713623046875	2	533.771134	1065.52771	-0.99025	-0.00052856	0.89415	0.00047727	-0.096092	-5.1291E-05	533.7715240795374	27.661	0.5007	27.661	27.44	27.941	0					26	9	4	0	0	0	0.19758	1	833	833		76.774	21.27	1	294940			65047	3139	53613	53664	71643	71643					-0.002427874342401992
YMDNEPMLE	9	2 Oxidation (M)	_YM(Oxidation (M))DNEPM(Oxidation (M))LE_		YM(1)DNEPM(1)LE		YM(59)DNEPM(59)LE	0	0	2		tr|A0A553SIF9|A0A553SIF9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_14785PE=4SV=1	tr|A0A553SIF9|A0A553SIF9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_14785PE=4SV=1	tr|A0A553SIF9|A0A553SIF9_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_14785PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	587.2273559570312	2	587.225565	1172.43658	2.1816	0.0012811	-0.05161	-3.0307E-05	2.13	0.0012508	587.2254205639937	115.56	1.0237	115.56	115.3	116.32	0					52	21	4	0	0	0	0.33652	1	13219	13219		58.782	7.4465	1	1291200			65048	33378	53614	53665	71644	71644		734;735			-0.14274463984497743
YMFIQSLF	8	Unmodified	_YMFIQSLF_					0	0	0		tr|A0A553SQZ9|A0A553SQZ9_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00055PE=4SV=1	tr|A0A553SQZ9|A0A553SQZ9_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00055PE=4SV=1	tr|A0A553SQZ9|A0A553SQZ9_NIACIEALdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_00055PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.7991943359375	2	524.762246	1047.50994	2.699	0.0014163	4.0098	0.0021042	6.7088	0.0035205	525.2664560540638	130.92	0.53732	129.45	129.16	129.69	-1.478					11	10	2	0	0	0	0.028476	1	12563	12563		76.847	7.7537	1	17446			65049	34212	53615	53666	71645	71645					-0.011915026890619629
YMGRSQPPI	9	Oxidation (M)	_YM(Oxidation (M))GRSQPPI_		YM(1)GRSQPPI		YM(51)GRSQPPI	0	0	1			REV__nc|ENSG00000151532|Q96AJ9-1|VTI1A	REV__nc|ENSG00000151532|Q96AJ9-1|VTI1A	MULTI-MSMS	OvCa9_classI_Rep2	2	532.7630004882812	2	532.763309	1063.51206	-2.5391	-0.0013527	2.0536	0.0010941	-0.48551	-0.00025866	532.7645469241053	118.72	1.6329	118.57	117.94	119.57	-0.14755					101	32	5	0	0	0	0.40667	1	11410	11410		51.335	8.861	1	241770	+		65050	20239	53616	53667	71646	71646		474			-0.017150739512771906
YMGRWGGG	8	Unmodified	_YMGRWGGG_					0	0	0			REV__nc|ENSG00000096746|P31942-2|HNRNPH3;REV__ENST00000469172.5_1_10:70098233-70101808:+|nuORF	REV__ENST00000469172.5_1_10:70098233-70101808:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	442.1985168457031	2	442.197605	882.380657	0.87636	0.00038752	0.037713	1.6677E-05	0.91407	0.0004042	442.19686435791056	68.641	1.5662	68.641	68.274	69.84	0					58	37	2	0	0	0	0.72922	1	6504	6504		37.028	6.5248	1	5325400	+		65051	17309;26239	53617	53668	71647	71647					-0.06523839528506414
YMKERAQI	8	Unmodified	_YMKERAQI_					0	0	0			REV__tr|A0A7D6ZWU4|A0A7D6ZWU4_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_19315PE=3SV=1	REV__tr|A0A7D6ZWU4|A0A7D6ZWU4_9CLOTNucleaseSbcCDsubunitCOS=ClostridiumintestinaleOX=36845GN=HZF06_19315PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	519.7738037109375	2	519.773677	1037.5328	1.0842	0.00056353	-0.45258	-0.00023524	0.63159	0.00032829	519.7733182741239	128.34	2.792	127.25	126.36	129.15	-1.0933					96	55	4	0	0	0	0.45246	1	10110	10110		82.305	0	1	251840	+		65052	32302	53618	53669	71648	71648					0.015535164283846825
YMKHTRLF	8	Unmodified	_YMKHTRLF_					0	0	0		nc|ENSG00000177731|Q13045-3|FLII;ENST00000578101.5_1_17:18148454-18160363:-|nuORF;ENSG00000177731|ENST00000327031|FLII;nc|ENSG00000177731|Q13045-2|FLII;ENST00000465046.1_1_17:18149056-18149185:-|nuORF;ENST00000487369.5_1_17:18148865-18149298:-|nuORF	nc|ENSG00000177731|Q13045-3|FLII	nc|ENSG00000177731|Q13045-3|FLII	MULTI-MSMS	OvCa99_classI_Rep5	1	548.2938842773438	2	548.292037	1094.56952	-0.76077	-0.00041713	0.99748	0.00054691	0.2367	0.00012978	548.2920742650891	59.737	1.0874	59.737	59.265	60.352	0					52	27	3	0	0	0	0.57734	1	5162	5162		68.787	13.283	1	4608700			65053	7708	53619	53670	71649	71649					0.02601813044930168
YMLGFAWTL	9	Unmodified	_YMLGFAWTL_					0	0	0			REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3	REV__nc|ENSG00000150471|Q9HAR2-2|ADGRL3	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.7509765625	2	551.275521	1100.53649	1.0634	0.00058622	-2.0371	-0.001123	-0.97368	-0.00053677	551.2744880509989	144.49	0.48672	144.49	144.16	144.64	0					21	9	3	0	0	0	0.027462	1	16863	16863		42.474	8.3019	1	104730	+		65054	20190	53620	53671	71650	71650					-0.009758137977541992
YMPNPMAS	8	Unmodified	_YMPNPMAS_					0	0	0			REV__tr|A0A553SK87|A0A553SK87_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_18115PE=4SV=1	REV__tr|A0A553SK87|A0A553SK87_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_18115PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	455.69287109375	2	455.693506	909.37246	0.16066	7.3211E-05	-3.9378	-0.0017945	-3.7772	-0.0017212	455.69169085327525	60.84	0.85653	60.84	60.602	61.458	0					45	19	4	0	0	0	0.72896	1	5326	5326		37.159	3.6435	1	2088200	+		65055	30095	53621	53672	71651	71651					-0.08585154560148567
YMSMRRQLA	9	Unmodified	_YMSMRRQLA_					0	0	0			REV__nc|ENSG00000111913|Q9Y4F9|RIPOR2	REV__nc|ENSG00000111913|Q9Y4F9|RIPOR2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	578.8577880859375	2	578.291711	1154.56887	-0.4453	-0.00025752	1.537	0.00088885	1.0917	0.00063134	578.2930265901418	75.877	0.43939	72.938	72.545	72.985	-2.9389					11	8	2	0	0	0	0.027462	1	5957	5957		31.955	26.034	1	11527	+		65056	28799	53622	53673	71652	71652					-0.0022334966638482
YMYHHPTSA	9	Oxidation (M)	_YM(Oxidation (M))YHHPTSA_		YM(1)YHHPTSA		YM(100)YHHPTSA	0	0	1		nc|ENSG00000120594|Q6UX71-3|PLXDC2;ENST00000377238.2_1_10:20332341-20568745:+|nuORF;nc|ENSG00000120594|Q6UX71-2|PLXDC2;PLXDC2|p.I490Lfs*11|1|0.12|ENSG00000120594|chr10:20245500-20245500|A/-|frameshift_variant;ENSG00000120594|ENST00000377252|PLXDC2	nc|ENSG00000120594|Q6UX71-3|PLXDC2	nc|ENSG00000120594|Q6UX71-3|PLXDC2	MULTI-MSMS	OvCa99_classI_Rep5	1	561.73681640625	2	561.737291	1121.46003	-0.16522	-9.2809E-05	-0.04961	-2.7868E-05	-0.21483	-0.00012068	561.7371073530627	33.897	3.49	33.897	33.533	37.023	0					185	74	4	0	0	0	0.085069	3	1594	1573;1594;1620		101.21	56.9	1	1400400			65057	3436	53623	53674	71653;71654;71655	71654		108			-0.09584237365038462
YMYHHPTSA	9	Unmodified	_YMYHHPTSA_					0	0	0		nc|ENSG00000120594|Q6UX71-3|PLXDC2;ENST00000377238.2_1_10:20332341-20568745:+|nuORF;nc|ENSG00000120594|Q6UX71-2|PLXDC2;PLXDC2|p.I490Lfs*11|1|0.12|ENSG00000120594|chr10:20245500-20245500|A/-|frameshift_variant;ENSG00000120594|ENST00000377252|PLXDC2	nc|ENSG00000120594|Q6UX71-3|PLXDC2	nc|ENSG00000120594|Q6UX71-3|PLXDC2	MULTI-MSMS	OvCa99_classI_Rep5	1	553.739501953125	2	553.739834	1105.46511	-0.8829	-0.0004889	0.21948	0.00012153	-0.66342	-0.00036736	553.7399189775695	37.046	1.5054	37.046	36.796	38.301	0					81	32	4	0	0	0	0.043206	2	2015	1991;2015		123.99	66.177	1	5077300			65058	3436	53623	53675	71656;71657	71657					-0.08339933502406893
YNFIQVPKLSL	11	Unmodified	_YNFIQVPKLSL_					0	0	0		tr|A0A7D6VRV7|A0A7D6VRV7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08505PE=4SV=1	tr|A0A7D6VRV7|A0A7D6VRV7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08505PE=4SV=1	tr|A0A7D6VRV7|A0A7D6VRV7_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_08505PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	440.2749938964844	3	441.255334	1320.74417	0.6211	0.00027407	-3.1499	-0.0013899	-2.5288	-0.0011158	441.2538754229029	69.205	0.64759	66.585	66.118	66.765	-2.6203					16	12	2	0	0	0	0.025818	1	5437	5437		23.378	0	1	11299			65059	34958	53624	53676	71658	71658					0.09663091671154689
YNGATRKL	8	Unmodified	_YNGATRKL_					0	0	0		DNAJA1|p.T279Ifs*26|1|0.14|ENSG00000086061|chr9:33036651-33036651|C/-|frameshift_variant;nc|ENSG00000086061|P31689-2|DNAJA1;ENSG00000086061|ENST00000330899|DNAJA1;NFX1-DNAJA1|1|fusion	DNAJA1|p.T279Ifs*26|1|0.14|ENSG00000086061|chr9:33036651-33036651|C/-|frameshift_variant	DNAJA1|p.T279Ifs*26|1|0.14|ENSG00000086061|chr9:33036651-33036651|C/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	461.759033203125	2	461.758884	921.503215	-0.11947	-5.5164E-05	0.059114	2.7296E-05	-0.060352	-2.7868E-05	461.75877344788535	43.122	0.9835	43.122	42.883	43.866	0					42	22	4	0	0	0	0.47824	1	2819	2819		79.713	24.208	1	2312300			65060	750	53625	53677	71659	71659					0.0393232047457559
YNGRYYHLR	9	Unmodified	_YNGRYYHLR_					0	0	0			REV__nc|ENSG00000204574|Q8NE71-2|ABCF1	REV__nc|ENSG00000204574|Q8NE71-2|ABCF1	MULTI-SECPEP	OvCa99_classI_Rep5	1	621.8368530273438	2	621.312346	1240.61014	1.1229	0.00069766	0.98637	0.00061285	2.1093	0.0013105	621.3124074755868	147.45	0.34119	147.45	147.26	147.6	0					10	6	2	0	0	0	0.027462	1	17253	17253		23.042	6.5693	1	18286	+		65061	23169	53626	53678	71660	71660					-0.0005412931107002805
YNIEQEQKL	9	Unmodified	_YNIEQEQKL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2;ACTR2|p.L303Gfs*32|1|0.04|ENSG00000138071|chr2:65265066-65265067|-/TGGAGTGCAGTGGTGCAGTCTCG|frameshift_variant	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MSMS	OvCa9_classI_Rep4_	4	582.8001708984375	2	582.798403	1163.58225	-1.51	-0.00088004	1.5395	0.00089719	0.029419	1.7145E-05	582.7992164270148	70.965	1.9411	67.509	67.203	69.144	-3.4563					67	39	2	0	0	0	0.0070026	2	5381	5381;5392		213.85	75.788	1	1004600			65062	4652	53627	53679	71661;71662	71661					0.007005029181982536
YNIEQEQKL	9	Unmodified	_YNIEQEQKL_					0	0	0		ENSG00000138071|ENST00000260641|ACTR2;nc|ENSG00000138071|P61160-2|ACTR2;ACTR2|p.L303Gfs*32|1|0.04|ENSG00000138071|chr2:65265066-65265067|-/TGGAGTGCAGTGGTGCAGTCTCG|frameshift_variant	ENSG00000138071|ENST00000260641|ACTR2	ENSG00000138071|ENST00000260641|ACTR2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	582.798403	1163.58225	-0.25447	-0.0001483	0.11303	6.5876E-05	-0.14144	-8.2429E-05	582.7983254967663	70.012	1.9819	67.441	66.865	68.847	-2.5707	-0.033935	-0.00066672	NaN	213.85	80	38	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	226040			65063	4652	53627	53679							0.007005029181982536
YNIFRSTF	8	Unmodified	_YNIFRSTF_					0	0	0		ENSG00000197841|ENST00000492450|ZNF181;nc|ENSG00000197841|Q2M3W8-2|ZNF181;nc|ENSG00000197841|Q2M3W8-3|ZNF181	ENSG00000197841|ENST00000492450|ZNF181	ENSG00000197841|ENST00000492450|ZNF181	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.2683715820312	2	524.266542	1046.51853	-1.209	-0.00063385	4.1828	0.0021929	2.9737	0.001559	524.2686875727288	69.518	1.7593	66.036	65.371	67.13	-3.4812					74	35	4	0	0	0	0.33245	1	5228	5228		101.21	3.7389	1	1960900			65064	8753	53628	53680	71663	71663					-0.0028681272824542248
YNIFRSTF	8	Unmodified	_YNIFRSTF_					0	0	0		ENSG00000197841|ENST00000492450|ZNF181;nc|ENSG00000197841|Q2M3W8-2|ZNF181;nc|ENSG00000197841|Q2M3W8-3|ZNF181	ENSG00000197841|ENST00000492450|ZNF181	ENSG00000197841|ENST00000492450|ZNF181	MULTI-MATCH	OvCa9_classI_Rep2	2		2	524.266542	1046.51853	-0.8008	-0.00041983	3.7255	0.0019532	2.9247	0.0015333	524.2684382485184	68.757	1.6405	66.137	65.523	67.164	-2.6203	-0.099793	-5.8065E-05	NaN	101.21	76	32	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	384630			65065	8753	53628	53680							-0.0028681272824542248
YNIFRSTF	8	Unmodified	_YNIFRSTF_					0	0	0		ENSG00000197841|ENST00000492450|ZNF181;nc|ENSG00000197841|Q2M3W8-2|ZNF181;nc|ENSG00000197841|Q2M3W8-3|ZNF181	ENSG00000197841|ENST00000492450|ZNF181	ENSG00000197841|ENST00000492450|ZNF181	MULTI-MATCH	OvCa9_classI_Rep3	3		2	524.266542	1046.51853	0.29617	0.00015527	2.3276	0.0012203	2.6238	0.0013756	524.2675507778005	69.351	1.8448	66.537	65.511	67.356	-2.8144	0.30016	-0.0015238	NaN	101.21	61	36	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	64600			65066	8753	53628	53680							-0.0028681272824542248
YNIIEWFLF	9	Unmodified	_YNIIEWFLF_					0	0	0			REV__L1MDa_dup2778|chr7:47340719-47342131:-|2.305162096757514|0.4082244758708406|2.5|429.0|63|1|anti-sense	REV__L1MDa_dup2778|chr7:47340719-47342131:-|2.305162096757514|0.4082244758708406|2.5|429.0|63|1|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	622.3631591796875	2	622.82115	1243.62775	1.3061	0.00081348	-3.0483	-0.0018986	-1.7422	-0.0010851	623.3214701564204	138.21	1.3039	138.21	137.87	139.17	0					48	27	3	0	0	0	0.027462	1	16144	16144		56.721	17.915	1	76664	+		65067	28435	53629	53681	71664	71664					0.015677731712230525
YNINNKGLGL	10	Unmodified	_YNINNKGLGL_					0	0	0		tr|A0A7D6VQ84|A0A7D6VQ84_9CLOTAryl-sulfatesulfotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19800PE=4SV=1	tr|A0A7D6VQ84|A0A7D6VQ84_9CLOTAryl-sulfatesulfotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19800PE=4SV=1	tr|A0A7D6VQ84|A0A7D6VQ84_9CLOTAryl-sulfatesulfotransferaseOS=ClostridiumintestinaleOX=36845GN=HZF06_19800PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.27099609375	2	553.303655	1104.59276	2.377	0.0013152	-0.78872	-0.0004364	1.5883	0.0008788	553.3024506736103	113.27	0.43594	113.27	113.06	113.5	0					18	10	2	0	0	0	0.026936	1	12882	12882		84.916	0	1	331290			65068	34828	53630	53682	71665	71665					0.04464530363270569
YNIQNLYII	9	Unmodified	_YNIQNLYII_					0	0	0		tr|A0A7D6ZFQ4|A0A7D6ZFQ4_9CLOTOligosaccharideflippasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18850PE=4SV=1	tr|A0A7D6ZFQ4|A0A7D6ZFQ4_9CLOTOligosaccharideflippasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18850PE=4SV=1	tr|A0A7D6ZFQ4|A0A7D6ZFQ4_9CLOTOligosaccharideflippasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18850PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	577.81494140625	2	577.316232	1152.61791	2.1869	0.0012625	-2.3042	-0.0013303	-0.11734	-6.774E-05	577.3159211924545	116.24	1.18	116.24	115.73	116.91	0					79	25	5	0	0	0	0.27546	1	13269	13269		65.803	9.0821	1	4068600			65069	35519	53631	53683	71666	71666					0.04770585165852026
YNKFTIVF	8	Unmodified	_YNKFTIVF_					0	0	0			REV__ENST00000524795.5_1_15:66587446-66615029:+|nuORF	REV__ENST00000524795.5_1_15:66587446-66615029:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	516.27880859375	2	516.28166	1030.54877	-0.68759	-0.00035499	-3.8689	-0.0019974	-4.5565	-0.0023524	516.2795595911887	67.546	1.4315	64.885	64.446	65.878	-2.661					69	28	3	0	0	0	0.47599	1	5285	5285		79.939	5.6842	1	532760	+		65070	21239	53632	53684	71667	71667					0.03471545936963594
YNKKDVLL	8	Unmodified	_YNKKDVLL_					0	0	0		tr|A0A7D6VWZ4|A0A7D6VWZ4_9CLOTPhageheadclosureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10195PE=4SV=1	tr|A0A7D6VWZ4|A0A7D6VWZ4_9CLOTPhageheadclosureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10195PE=4SV=1	tr|A0A7D6VWZ4|A0A7D6VWZ4_9CLOTPhageheadclosureproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10195PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.7930908203125	2	496.792392	991.570232	-1.5717	-0.00078079	1.0825	0.00053777	-0.48917	-0.00024302	496.7927828421501	119.1	0.98576	117.75	117.31	118.3	-1.3444					36	18	3	0	0	0	0.71267	1	11171	11171		40.778	1.5253	1	86187			65071	35266	53633	53685	71668	71668					0.07410930965670559
YNKRVHKRI	9	Unmodified	_YNKRVHKRI_					0	0	0			REV__CASP8AP2|p.E1578Dfs*44|1|0.06|ENSG00000118412|chr6:89868023-89868024|-/CCCTGTTC|frameshift_variant	REV__CASP8AP2|p.E1578Dfs*44|1|0.06|ENSG00000118412|chr6:89868023-89868024|-/CCCTGTTC|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	607.3408203125	2	607.367456	1212.72036	1.26	0.00076531	-0.26606	-0.00016159	0.99399	0.00060372	607.3671482148748	131.54	0.23669	131.54	131.34	131.58	0					5	4	2	0	0	0	0.027462	1	15261	15261		25.45	2.4077	1	32160	+		65072	15742	53634	53686	71669	71669					0.12250715747995855
YNLIKIYRKA	10	Unmodified	_YNLIKIYRKA_					0	0	0		tr|A0A7D6VUX0|A0A7D6VUX0_9CLOTEndosporegerminationpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03220PE=3SV=1	tr|A0A7D6VUX0|A0A7D6VUX0_9CLOTEndosporegerminationpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03220PE=3SV=1	tr|A0A7D6VUX0|A0A7D6VUX0_9CLOTEndosporegerminationpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_03220PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	641.3862915039062	2	641.387522	1280.76049	-6.9547	-0.0044607	2.7235	0.0017468	-4.2313	-0.0027139	641.3889588117827	161.52	1.4957	160.15	159.74	161.23	-1.3692					63	30	3	0	0	0	0.81992	1	14065	14065		16.473	0.83134	1	83087			65073	35202	53635	53687	71670	71670					0.131342176278622
YNLKEMWK	8	Unmodified	_YNLKEMWK_					0	0	0		tr|A0A7D6ZH73|A0A7D6ZH73_9CLOTIsocitratedehydrogenase[NADP]OS=ClostridiumintestinaleOX=36845GN=HZF06_21900PE=3SV=1	tr|A0A7D6ZH73|A0A7D6ZH73_9CLOTIsocitratedehydrogenase[NADP]OS=ClostridiumintestinaleOX=36845GN=HZF06_21900PE=3SV=1	tr|A0A7D6ZH73|A0A7D6ZH73_9CLOTIsocitratedehydrogenase[NADP]OS=ClostridiumintestinaleOX=36845GN=HZF06_21900PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	556.2869873046875	2	556.283877	1110.5532	1.8039	0.0010035	1.6152	0.00089852	3.4191	0.001902	556.2846347321127	29.521	0.87109	26.811	26.636	27.508	-2.7097					46	17	3	0	0	0	0.75426	1	762	762		18.324	0.95945	1	197300			65074	35567	53636	53688	71671	71671					0.0023468708818654704
YNLRKRIVFRK	11	Unmodified	_YNLRKRIVFRK_					0	0	0		nc|ENSG00000143473|O95259-2|KCNH1;ENSG00000143473|ENST00000271751|KCNH1	nc|ENSG00000143473|O95259-2|KCNH1	nc|ENSG00000143473|O95259-2|KCNH1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.3089904785156	3	498.312288	1491.91504	-6.6762	-0.0033268	2.0273	0.0010102	-4.6489	-0.0023166	498.3133001501435	161.41	1.8887	159.79	158.52	160.4	-1.6239					107	42	4	0	0	0	0.72582	1	15988	15988		3.4087	0.38274	1	100850			65075	5059	53637	53689	71672	71672					0.1887546683308301
YNNEIYGTF	9	Unmodified	_YNNEIYGTF_					0	0	0			REV__nc|ENSG00000165186|Q96NR3-2|PTCHD1	REV__nc|ENSG00000165186|Q96NR3-2|PTCHD1	MULTI-MSMS	OvCa99_classI_Rep5	1	560.7525634765625	2	560.750921	1119.48729	1.7923	0.001005	1.8795	0.001054	3.6718	0.002059	560.7518427253498	150.02	0.99968	150.02	149.79	150.79	0					27	19	2	0	0	0	0.55588	1	17567	17567		37.159	1.5408	1	53242	+		65076	21066	53638	53690	71673	71673					-0.06767430553009035
YNNNIKYY	8	Unmodified	_YNNNIKYY_					0	0	0		tr|A0A7D6VNH6|A0A7D6VNH6_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18935PE=4SV=1	tr|A0A7D6VNH6|A0A7D6VNH6_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18935PE=4SV=1	tr|A0A7D6VNH6|A0A7D6VNH6_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18935PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	545.2930297851562	2	546.261456	1090.50836	1.8303	0.00099983	2.2325	0.0012195	4.0628	0.0022194	546.2628243759181	102.98	0.50049	102.98	102.76	103.26	0					20	11	2	0	0	0	0.028476	1	11536	11536		52.299	24.417	1	866920			65077	34706	53639	53691	71674	71674					-0.03327420453456398
YNNNIKYY	8	Unmodified	_YNNNIKYY_					0	0	0		tr|A0A7D6VNH6|A0A7D6VNH6_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18935PE=4SV=1	tr|A0A7D6VNH6|A0A7D6VNH6_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18935PE=4SV=1	tr|A0A7D6VNH6|A0A7D6VNH6_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18935PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	546.261456	1090.50836	-0.8046	-0.00043952	3.5515	0.0019401	2.7469	0.0015005	546.2632211168208	103.81	0.59236	103.24	102.98	103.57	-0.57639	0.043671	0.00062038	NaN	68.485	23	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	39388			65078	34706	53639	53691							-0.03327420453456398
YNNNIKYY	8	Unmodified	_YNNNIKYY_					0	0	0		tr|A0A7D6VNH6|A0A7D6VNH6_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18935PE=4SV=1	tr|A0A7D6VNH6|A0A7D6VNH6_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18935PE=4SV=1	tr|A0A7D6VNH6|A0A7D6VNH6_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18935PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	546.261456	1090.50836	0.0028714	1.5685E-06	3.251	0.0017759	3.2538	0.0017775	546.2626729928766	104.68	1.1438	103.25	102.6	103.75	-1.4347	0.053784	0.00029205	NaN	68.485	34	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49138			65079	34706	53639	53691							-0.03327420453456398
YNNNIKYY	8	Unmodified	_YNNNIKYY_					0	0	0		tr|A0A7D6VNH6|A0A7D6VNH6_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18935PE=4SV=1	tr|A0A7D6VNH6|A0A7D6VNH6_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18935PE=4SV=1	tr|A0A7D6VNH6|A0A7D6VNH6_9CLOTGlycosyltransferasefamily2proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_18935PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	546.261456	1090.50836	-0.54278	-0.0002965	3.3298	0.001819	2.787	0.0015225	546.2632990586302	105.32	0.44647	103.31	103.1	103.55	-2.0161	0.1138	0.00037819	NaN	68.485	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	33135			65080	34706	53639	53691							-0.03327420453456398
YNPILLALV	9	Unmodified	_YNPILLALV_					0	0	0		tr|A0A7D6VMI6|A0A7D6VMI6_9CLOTZIPfamilymetaltransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_15560PE=4SV=1	tr|A0A7D6VMI6|A0A7D6VMI6_9CLOTZIPfamilymetaltransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_15560PE=4SV=1	tr|A0A7D6VMI6|A0A7D6VMI6_9CLOTZIPfamilymetaltransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_15560PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	507.79925537109375	2	508.312961	1014.61137	0.7608	0.00038672	1.4185	0.00072104	2.1793	0.0011078	508.31309792601354	151.84	0.56041	151.84	151.6	152.16	0					12	11	2	0	0	0	0.027462	1	17751	17751		52.299	7.7681	1	33145			65081	34658	53640	53692	71675	71675					0.10464692005120924
YNPKKMKRL	9	Unmodified	_YNPKKMKRL_					0	0	0		ENST00000601984.1_1_19:7916400-7921867:+|nuORF;nc|ENSG00000142459|Q96CN4|EVI5L;ENSG00000142459|ENST00000538904|EVI5L	ENST00000601984.1_1_19:7916400-7921867:+|nuORF	ENST00000601984.1_1_19:7916400-7921867:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	589.3426513671875	2	589.347343	1176.68013	-5.1334	-0.0030254	-2.3752	-0.0013998	-7.5086	-0.0044252	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.61208	1	12564	12564		30.504	2.6214	1	589610			65082	4973	53641	53693	71676	71676					0.09886033033194508
YNQCCGFN	8	Unmodified	_YNQCCGFN_					0	0	0		ENST00000346128.10_1_15:29993249-29993384:-|nuORF	ENST00000346128.10_1_15:29993249-29993384:-|nuORF	ENST00000346128.10_1_15:29993249-29993384:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	474.6722106933594	2	474.670563	947.326572	1.0425	0.00049485	0.49924	0.00023698	1.5418	0.00073183	474.67062160055553	142.36	0.74808	142.36	142.04	142.78	0					29	14	3	0	0	0	0.75241	1	16620	16620		25.45	6.0902	1	120660			65083	10626	53642	53694	71677	71677					-0.1491979974239257
YNSAGLLIKAY	11	Unmodified	_YNSAGLLIKAY_					0	0	0		ENSG00000149256|ENST00000278550|TENM4	ENSG00000149256|ENST00000278550|TENM4	ENSG00000149256|ENST00000278550|TENM4	MULTI-MSMS	OvCa99_classI_Rep5	1	607.3355712890625	2	606.834788	1211.65502	1.5288	0.00092775	0.10368	6.2915E-05	1.6325	0.00099066	606.8347350687092	146.72	0.7316	146.72	146.43	147.16	0					27	14	3	0	0	0	0.68757	1	17163	17163		33.922	4.7516	1	63949			65084	5447	53643	53695	71678	71678					0.05766256711626738
YNSEYYHF	8	Unmodified	_YNSEYYHF_					0	0	0		nc|ENSG00000112655|Q13308-3|PTK7;chr6:43132687-43141668|408|15.38|0.92|4.06|+|ENST00000349241|PTK7,PTK7;nc|ENSG00000112655|Q13308-4|PTK7;nc|ENSG00000112655|Q13308-2|PTK7;ENSG00000112655|ENST00000230419|PTK7;nc|ENSG00000112655|Q13308-6|PTK7;ENST00000487673.5_1_6:43111066-43128616:+|nuORF	nc|ENSG00000112655|Q13308-3|PTK7	nc|ENSG00000112655|Q13308-3|PTK7	MULTI-MSMS	OvCa99_classI_Rep5	1	561.732177734375	2	561.729989	1121.44543	1.1934	0.00067037	1.1447	0.00064303	2.3381	0.0013134	561.7304734432898	81.128	0.50301	81.128	80.91	81.413	0					25	11	3	0	0	0	0.47599	1	8351	8351		79.939	28.604	1	1306300			65085	518	53644	53696	71679	71679					-0.1104398624154328
YNSGLVMINR	10	Unmodified	_YNSGLVMINR_					0	0	0			REV__tr|A0A7D7A4H6|A0A7D7A4H6_9CLOTLysRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03160PE=3SV=1	REV__tr|A0A7D7A4H6|A0A7D7A4H6_9CLOTLysRfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_03160PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	583.8023071289062	2	583.802965	1165.59138	0.97841	0.0005712	-0.94752	-0.00055316	0.03089	1.8034E-05	583.8022564012331	54.534	2.495	51.362	50.341	52.836	-3.1715					180	85	3	0	0	0	0.79213	1	1455	1455		19.997	0.89325	1	155970	+		65086	32608	53645	53697	71680	71680					0.015205730028583275
YNSKVIVSRAI	11	Unmodified	_YNSKVIVSRAI_					0	0	0		tr|A0A7D6VTX3|A0A7D6VTX3_9CLOTFlagellarhook-lengthcontrolproteinFliKOS=ClostridiumintestinaleOX=36845GN=HZF06_04625PE=4SV=1	tr|A0A7D6VTX3|A0A7D6VTX3_9CLOTFlagellarhook-lengthcontrolproteinFliKOS=ClostridiumintestinaleOX=36845GN=HZF06_04625PE=4SV=1	tr|A0A7D6VTX3|A0A7D6VTX3_9CLOTFlagellarhook-lengthcontrolproteinFliKOS=ClostridiumintestinaleOX=36845GN=HZF06_04625PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	624.375244140625	2	625.366787	1248.71902	-6.4509	-0.0040341	3.3431	0.0020907	-3.1078	-0.0019435	625.368057714187	163.7	0.41385	162.06	161.87	162.28	-1.6336					15	10	2	0	0	0	0.026002	1	16162	16162		27.047	9.5793	1	24184			65087	35149	53646	53698	71681	71681					0.10461036868582596
YNVDQPQDI	9	Unmodified	_YNVDQPQDI_					0	0	0			REV__AHR|p.S522Yfs*21|1|0.06|ENSG00000106546|chr7:17339390-17339390|C/-|frameshift_variant	REV__AHR|p.S522Yfs*21|1|0.06|ENSG00000106546|chr7:17339390-17339390|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	546.2538452148438	2	546.253828	1090.4931	-1.4524	-0.00079336	1.1085	0.00060554	-0.34384	-0.00018782	546.254261928264	119.84	1.7272	119.67	119.3	121.03	-0.17138					86	34	4	0	0	0	0.53483	1	11527	11527		39.253	2.8061	1	216370	+		65088	15582	53647	53699	71682	71682					-0.048523320413323745
YNVELEMLL	9	Unmodified	_YNVELEMLL_					0	0	0			REV__TRIM2|p.G665Efs*11|1|0.47|ENSG00000109654|chr4:153328581-153328581|G/-|frameshift_variant	REV__TRIM2|p.G665Efs*11|1|0.47|ENSG00000109654|chr4:153328581-153328581|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	563.2857055664062	2	562.288825	1122.5631	0.41574	0.00023377	-2.9813	-0.0016764	-2.5656	-0.0014426	562.7882630612407	41.714	1.089	38.733	38.127	39.216	-2.9804					43	20	3	0	0	0	0.027462	1	1828	1828		45.952	8.1404	1	77127	+		65089	17937	53648	53700	71683	71683					0.006718303029174422
YNVLPNKSL	9	Unmodified	_YNVLPNKSL_					0	0	0		ENSG00000146281|ENST00000275072|PM20D2	ENSG00000146281|ENST00000275072|PM20D2	ENSG00000146281|ENST00000275072|PM20D2	MULTI-MSMS	OvCa9_classI_Rep4_	4	524.293701171875	2	524.295299	1046.57605	-0.58406	-0.00030622	-1.4842	-0.00077815	-2.0683	-0.0010844	524.2944125180313	22.173	1.1824	20.835	20.574	21.757	-1.3386					45	28	2	0	0	0	0.6653	1	286	286		24.203	0.68005	1	49605			65090	5281	53649	53701	71684	71684					0.05462029477325814
YNVTEIGDGD	10	Unmodified	_YNVTEIGDGD_					0	0	0			REV__L1PA3_dup1152|chr2:117623254-117629278:+|1.1606400945596698|0.0841542146032081|3.79|394.0|253|2|anti-sense	REV__L1PA3_dup1152|chr2:117623254-117629278:+|1.1606400945596698|0.0841542146032081|3.79|394.0|253|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.8533325195312	2	541.735468	1081.45638	-0.53718	-0.00029101	1.8038	0.00097716	1.2666	0.00068615	541.7362253851526	39.468	0.78053	39.468	39.017	39.798	0					24	17	2	0	0	0	0.027118	1	2280	2280		32.812	13.452	1	138620	+		65091	28485	53650	53702	71685	71685					-0.08108628657873851
YNWRVRQG	8	Unmodified	_YNWRVRQG_					0	0	0		ENST00000552551.5_2_12:53343373-53343466:-|nuORF	ENST00000552551.5_2_12:53343373-53343466:-|nuORF	ENST00000552551.5_2_12:53343373-53343466:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.8270263671875	2	539.780682	1077.54681	-1.3302	-0.00071802	4.0895	0.0022074	2.7593	0.0014894	539.7842120098737	93.653	0.20046	91.146	91.012	91.212	-2.5072					7	4	2	0	0	0	0.028476	1	8180	8180		23.042	0	1	94857			65092	13612	53651	53703	71686	71686					0.011139299716887763
YNYSKTLF	8	Unmodified	_YNYSKTLF_					0	0	0			REV__ENSG00000154864|ENST00000674853|PIEZO2	REV__ENSG00000154864|ENST00000674853|PIEZO2	MULTI-MSMS	OvCa9_classI_Rep2	2	518.2616577148438	2	518.260925	1034.5073	1.3847	0.00071764	1.7811	0.00092307	3.1658	0.0016407	518.2616936757189	128.68	1.5825	128.45	128.13	129.71	-0.22696					76	31	3	0	0	0	0.64026	1	12599	12599		55.504	0	1	418450	+		65093	20404	53652	53704	71687	71687					-0.00857634822386899
YPAAKRVKL	9	Unmodified	_YPAAKRVKL_					0	0	0		nc|ENSG00000136997|P01106-1|MYC;nc|ENSG00000136997|P01106-3|MYC;ENSG00000136997|ENST00000621592|MYC	nc|ENSG00000136997|P01106-1|MYC	nc|ENSG00000136997|P01106-1|MYC	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.3306884765625	2	523.329476	1044.6444	-0.2833	-0.00014826	-0.33036	-0.00017289	-0.61365	-0.00032114	523.3291655160132	47.864	1.4726	44.756	44.237	45.709	-3.1077					81	28	4	0	0	0	0.29717	1	2597	2597		63.306	11.007	1	378910			65094	4547	53653	53705	71688	71688					0.12386318847848088
YPACPPYFL	9	Carbamidomethyl (C)	_YPAC(Carbamidomethyl (C))PPYFL_	YPAC(1)PPYFL		YPAC(60)PPYFL		0	1	0		ENST00000467101.5_1_20:60776216-60776357:+|nuORF	ENST00000467101.5_1_20:60776216-60776357:+|nuORF	ENST00000467101.5_1_20:60776216-60776357:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	564.2716674804688	2	564.265153	1126.51575	2.4361	0.0013746	2.2611	0.0012758	4.6971	0.0026504	564.2662212480377	100.08	0.71088	100.08	99.777	100.49	0					51	16	5	0	0	0	0.32242	1	11105	11105		60.404	10.962	1	4216300			65095	12303	53654	53706	71689	71689	142				-0.04244404177416072
YPALHTYLGG	10	Unmodified	_YPALHTYLGG_					0	0	0		ENST00000574745.5_1_17:9737208-9745865:+|nuORF;ENST00000458005.2_1_17:9738025-9745865:+|nuORF	ENST00000574745.5_1_17:9737208-9745865:+|nuORF	ENST00000574745.5_1_17:9737208-9745865:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	546.339111328125	2	546.279649	1090.54475	-2.7316	-0.0014922	-0.16479	-9.0023E-05	-2.8964	-0.0015823	546.2773256081393	126.29	1.1288	124.87	124.43	125.56	-1.4143					31	22	3	0	0	0	0.027021	1	11972	11972		21.96	0	1	14731			65096	12135	53655	53707	71690	71690					0.0030945644321036525
YPCPWHFPF	9	Unmodified	_YPCPWHFPF_					0	0	0			REV__nc|ENSG00000174485|Q7Z401|DENND4A	REV__nc|ENSG00000174485|Q7Z401|DENND4A	MULTI-MSMS	OvCa9_classI_Rep3	3	597.2618408203125	2	597.265487	1192.51642	-5.7021	-0.0034057	1.7839	0.0010655	-3.9182	-0.0023402	597.2662753283457	159.85	2.2734	158.52	158.16	160.43	-1.3316					91	44	4	0	0	0	0.61768	1	13837	13837		29.842	1.7601	1	88670	+		65097	21836	53656	53708	71691	71691					-0.07213564737708111
YPDRIMNTF	9	Unmodified	_YPDRIMNTF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	MULTI-MSMS	OvCa99_classI_Rep5	1	578.7781372070312	2	578.776416	1155.53828	2.2029	0.001275	0.32485	0.00018802	2.5278	0.001463	578.7764370676678	94.568	1.1872	94.568	94.264	95.451	0					91	27	5	0	0	0	0.0085876	3	10306	10284;10306;10331		176.44	60.986	1	10951000			65098	9485;8579	53657	53709	71692;71693;71694	71693					-0.033268047797946565
YPDRIMNTF	9	Unmodified	_YPDRIMNTF_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENST00000604929.1_1_9:140136931-140138005:+|nuORF;ENSG00000188229|ENST00000340384|TUBB4B;ENSG00000258947|ENST00000315491|TUBB3;nc|ENSG00000258947|Q13509-2|TUBB3	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3	ENSG00000258947|ENST00000315491|TUBB3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	578.776416	1155.53828	0.49462	0.00028627	-0.40245	-0.00023293	0.092164	5.3343E-05	579.2770610983249	97.132	0.30237	94.706	94.612	94.915	-2.4256	0.069322	-0.00078642	NaN	176.44	8	5	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24664			65099	9485;8579	53657	53709							-0.033268047797946565
YPDRVPVI	8	Unmodified	_YPDRVPVI_					0	0	0		GABARAP|p.F103Lfs*9|1|0.05|ENSG00000170296|chr17:7240899-7240900|-/C|frameshift_variant;ENSG00000170296|ENST00000302386|GABARAP;ENSG00000139112|ENST00000266458|GABARAPL1;ENSG00000034713|ENST00000037243|GABARAPL2;nc|ENSG00000139112|Q9H0R8-2|GABARAPL1	GABARAP|p.F103Lfs*9|1|0.05|ENSG00000170296|chr17:7240899-7240900|-/C|frameshift_variant	GABARAP|p.F103Lfs*9|1|0.05|ENSG00000170296|chr17:7240899-7240900|-/C|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	479.77264404296875	2	479.77146	957.528367	2.644	0.0012685	2.3497	0.0011273	4.9937	0.0023958	479.7711645356972	90.389	0.95583	90.389	90.02	90.976	0					66	23	5	0	0	0	0.32444	2	9707	9678;9707		102.77	34.289	1	6782400			65100	1079	53658	53710	71695;71696	71696					0.047903752771503605
YPEARLLL	8	Unmodified	_YPEARLLL_					0	0	0			REV__nc|ENSG00000185551|P24468-3|NR2F2	REV__nc|ENSG00000185551|P24468-3|NR2F2	MULTI-MSMS	OvCa9_classI_Rep3	3	487.78662109375	2	487.78711	973.559667	-0.68011	-0.00033175	-0.51742	-0.00025239	-1.1975	-0.00058414	487.78717268319804	102.91	1.8832	101.39	100.69	102.57	-1.5211					99	35	5	0	0	0	0.68714	1	7100	7100		45.952	3.5558	1	721970	+		65101	21912	53659	53711	71697	71697					0.07182948311253767
YPEDRGPLTP	10	Unmodified	_YPEDRGPLTP_					0	0	0			REV__ENSG00000016602|ENST00000370563|CLCA4	REV__ENSG00000016602|ENST00000370563|CLCA4	MULTI-SECPEP	OvCa9_classI_Rep4_	4	572.3176879882812	2	572.785296	1143.55604	-0.98308	-0.00056309	1.0378	0.00059442	0.054684	3.1322E-05	572.7856437777994	82.029	1.0644	79.346	79.109	80.173	-2.6829					40	21	2	0	0	0	0.026681	1	6764	6764		52.937	10.541	1	94891	+		65102	16525	53660	53712	71698	71698					-0.009997662532896356
YPEIPRKLRE	10	Unmodified	_YPEIPRKLRE_					0	0	0		ENST00000594661.5_1_19:50364507-50367546:-|nuORF;nc|ENSG00000039650|Q96T60-2|PNKP;ENST00000593946.5_1_19:50364507-50370327:-|nuORF;ENSG00000039650|ENST00000322344|PNKP	ENST00000594661.5_1_19:50364507-50367546:-|nuORF	ENST00000594661.5_1_19:50364507-50367546:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	434.7726745605469	3	434.250583	1299.72992	-0.36139	-0.00015693	-0.51609	-0.00022411	-0.87748	-0.00038104	434.2505888130841	42.244	0.29425	39.264	39.167	39.461	-2.9804					9	5	3	0	0	0	0.027207	1	1939	1939		30.569	21.77	1	10047			65103	1108	53661	53713	71699	71699					0.09204439242830631
YPFELCDVDL	10	Unmodified	_YPFELCDVDL_					0	0	0			REV__chr19:29821817-29822240|415|28.89|0.48|5.91|+|ENST00000576532|CCNE1,CCNE1	REV__chr19:29821817-29822240|415|28.89|0.48|5.91|+|ENST00000576532|CCNE1,CCNE1	MULTI-SECPEP	OvCa99_classI_Rep5	1	606.357177734375	2	607.275915	1212.53728	2.1842	0.0013264	3.9613	0.0024056	6.1455	0.003732	607.278392833805	133.98	0.47575	133.98	133.82	134.29	0					15	9	2	0	0	0	0.026915	1	15586	15586		27.882	7.8855	1	87636	+		65104	15972	53662	53714	71700	71700					-0.06049063939349253
YPFKNLID	8	Unmodified	_YPFKNLID_					0	0	0			REV__tr|A0A7D7A6W9|A0A7D7A6W9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11705PE=3SV=1	REV__tr|A0A7D7A6W9|A0A7D7A6W9_9CLOTABCtransporterATP-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_11705PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.25982666015625	2	505.271293	1008.52803	-1.1528	-0.00058247	-2.1734	-0.0010982	-3.3262	-0.0016806	505.2704155076336	80.997	0.68753	78.287	78.101	78.788	-2.7106					25	13	2	0	0	0	0.028476	1	6656	6656		47.916	16.386	1	115760	+		65105	31898	53663	53715	71701	71701					0.02410955557274974
YPFKPPKVAF	10	Unmodified	_YPFKPPKVAF_					0	0	0		ENST00000511691.1_1_5:138980019-139003047:+|nuORF;MATR3-UBE2D2|1|fusion;MATR3-UBE2D2|2|fusion;MATR3-UBE2D2|7|fusion;MATR3-UBE2D2|4|fusion;MATR3-UBE2D2|3|fusion;MATR3-UBE2D2|5|fusion;nc|ENSG00000131508|P62837-2|UBE2D2;MATR3-UBE2D2|6|fusion;nc|ENSG00000109332|P61077-3|UBE2D3;nc|ENSG00000109332|P61077-2|UBE2D3;ENSG00000109332|ENST00000453744|UBE2D3;ENSG00000131508|ENST00000398733|UBE2D2;ENSG00000078967|ENST00000222402|UBE2D4	ENST00000511691.1_1_5:138980019-139003047:+|nuORF	ENST00000511691.1_1_5:138980019-139003047:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	597.3414306640625	2	597.33951	1192.66447	1.4504	0.00086641	-1.8552	-0.0011082	-0.40478	-0.00024179	597.3381612394743	97.246	1.961	94.852	93.944	95.905	-2.3943					108	38	4	0	0	0	0.41408	2	8598	8598;8610		66.429	15.237	1	322410			65106	2709	53664	53716	71702;71703	71702					0.07584069787799308
YPGFTLRLDL	10	Unmodified	_YPGFTLRLDL_					0	0	0			REV__ENST00000513423.1_1_5:176524254-176524674:+|nuORF	REV__ENST00000513423.1_1_5:176524254-176524674:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	598.8092651367188	2	597.829506	1193.64446	2.9596	0.0017693	-1.6912	-0.001011	1.2684	0.00075827	597.8296800030939	111.96	0.44394	110.85	110.65	111.09	-1.1038					16	8	2	0	0	0	0.026659	1	8140	8140		45.972	11.8	1	14644	+		65107	20677	53665	53717	71704	71704					0.055382740571758404
YPGFTLRLDL	10	Unmodified	_YPGFTLRLDL_					0	0	0			REV__ENST00000513423.1_1_5:176524254-176524674:+|nuORF	REV__ENST00000513423.1_1_5:176524254-176524674:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	598.8082885742188	2	597.829506	1193.64446	2.5533	0.0015264	0.94076	0.00056241	3.4941	0.0020889	597.8308264818278	111.62	0.5947	110.52	110.05	110.65	-1.1038					17	11	2	0	0	0	0.026931	1	8118	8118		37.812	5.8567	1	11115	+		65108	20677	53665	53717	71705	71705					0.055382740571758404
YPGGGGGG	8	Unmodified	_YPGGGGGG_					0	0	0		ENSG00000185668|ENST00000373012|POU3F1	REV__nc|ENSG00000144406|Q8N2C7-7|UNC80	REV__nc|ENSG00000144406|Q8N2C7-7|UNC80	MULTI-SECPEP	OvCa99_classI_Rep5	1	620.83203125	1	621.262716	620.255439	1.4742	0.00091587	0.55659	0.00034579	2.0308	0.0012617	621.2628287148394	122.6	0.50545	122.6	122.45	122.95	0					15	10	3	0	0	0	0.028476	1	14109	14109		5.0869	0	1	132180	+		65109	19910	53666	53718	71706	71706					-0.06987808393228079
YPGHLGCPSGV	11	Unmodified	_YPGHLGCPSGV_					0	0	0			REV__ARID5B|p.M861Cfs*21|1|0.05|ENSG00000150347|chr10:62092044-62092044|A/-|frameshift_variant	REV__ARID5B|p.M861Cfs*21|1|0.05|ENSG00000150347|chr10:62092044-62092044|A/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	543.812255859375	2	543.755484	1085.49641	-0.18051	-9.8154E-05	1.5379	0.00083622	1.3573	0.00073806	543.7559775475947	122.71	0.49634	121.34	121.11	121.6	-1.3666					12	9	2	0	0	0	0.025329	1	11577	11577		44.117	18.543	1	16168	+		65110	15659	53667	53719	71707	71707					-0.04291360468300809
YPGHLGCPSGV	11	Unmodified	_YPGHLGCPSGV_					0	0	0			REV__ARID5B|p.M861Cfs*21|1|0.05|ENSG00000150347|chr10:62092044-62092044|A/-|frameshift_variant	REV__ARID5B|p.M861Cfs*21|1|0.05|ENSG00000150347|chr10:62092044-62092044|A/-|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	543.755484	1085.49641	1.4108	0.00076714	-1.17	-0.00063617	0.24087	0.00013097	543.7547257089534	122.4	0.68206	121.37	121.06	121.74	-1.0286	0.013387	-0.0010897	NaN	44.117	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16910	+		65111	15659	53667	53719							-0.04291360468300809
YPGIQYDHGGS	11	Unmodified	_YPGIQYDHGGS_					0	0	0			REV__ENST00000325279.4_1_16:84693236-84695736:+|nuORF	REV__ENST00000325279.4_1_16:84693236-84695736:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	597.2611694335938	2	597.264727	1192.5149	-5.4379	-0.0032479	2.8152	0.0016814	-2.6227	-0.0015665	597.2660692762465	159.19	1.1869	158.96	158.68	159.87	-0.22697					58	23	3	0	0	0	0.68021	1	16176	16176		36.447	9.6506	1	66497	+		65112	19312	53668	53720	71708	71708					-0.07365527292768093
YPGMARYL	8	Unmodified	_YPGMARYL_					0	0	0			REV__ENSG00000176142|ENST00000319172|TMEM39A	REV__ENSG00000176142|ENST00000319172|TMEM39A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	486.2984313964844	2	485.744388	969.474223	1.4164	0.00068799	-1.7954	-0.00087208	-0.37899	-0.00018409	485.7443510381739	67.594	0.39505	64.104	63.938	64.333	-3.4902					10	7	2	0	0	0	0.028476	1	4993	4993		39.021	13.571	1	15228	+		65113	21932	53669	53721	71709	71709					-0.011735401460896355
YPGSHLQIGYT	11	Unmodified	_YPGSHLQIGYT_					0	0	0		ENST00000513146.1_1_5:180681739-180687184:-|nuORF	ENST00000513146.1_1_5:180681739-180687184:-|nuORF	ENST00000513146.1_1_5:180681739-180687184:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	618.3042602539062	2	618.306395	1234.59824	0.10828	6.6952E-05	-3.7085	-0.002293	-3.6002	-0.002226	618.3038542312992	135.93	1.083	134.82	134.55	135.64	-1.1076					37	21	3	0	0	0	0.61983	1	11022	11022		42.864	2.0861	1	71709			65114	13006	53670	53722	71710	71710					-0.009677908449020833
YPHIGKIKL	9	Unmodified	_YPHIGKIKL_					0	0	0			REV__nc|ENSG00000138688|Q2LD37-7|BLTP1;REV__nc|ENSG00000138688|Q2LD37-6|BLTP1	REV__nc|ENSG00000138688|Q2LD37-6|BLTP1	MULTI-MSMS	OvCa99_classI_Rep5	1	534.8314208984375	2	534.831852	1067.64915	0.8365	0.00044739	-4.2495	-0.0022728	-3.413	-0.0018254	534.8296413644109	103.24	2.3818	103.24	102.98	105.36	0					213	55	5	0	0	0	0.11842	2	11573	11573;11606		92.191	7.7867	1	60018000	+		65115	19560;28886	53671	53723	71711;71712	71711					0.11803202990608952
YPHLHLGA	8	Unmodified	_YPHLHLGA_					0	0	0		ENST00000356728.10_1_1:151787708-151789240:-|nuORF	ENST00000356728.10_1_1:151787708-151789240:-|nuORF	ENST00000356728.10_1_1:151787708-151789240:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	454.24603271484375	2	454.24287	906.471186	0.46177	0.00020975	3.4508	0.0015675	3.9126	0.0017773	454.2443397502074	62.895	1.2328	62.895	62.661	63.894	0					56	30	2	0	0	0	0.46547	1	5615	5615		80.997	15.1	1	3213500			65116	10700	53672	53724	71713	71713					0.014209527914317732
YPHLHLGA	8	Unmodified	_YPHLHLGA_					0	0	0		ENST00000356728.10_1_1:151787708-151789240:-|nuORF	ENST00000356728.10_1_1:151787708-151789240:-|nuORF	ENST00000356728.10_1_1:151787708-151789240:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	454.24287	906.471186	2.7811	0.0012633	2.4435	0.0011099	5.2246	0.0023732	454.24460728290273	65.958	0.49763	63.262	62.821	63.319	-2.6958	0.18379	-0.00087852	NaN	80.997	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	8206.7			65117	10700	53672	53724							0.014209527914317732
YPIDRLYII	9	Unmodified	_YPIDRLYII_					0	0	0			REV__tr|A0A7D6ZW15|A0A7D6ZW15_9CLOTAminotransferaseclassIVOS=ClostridiumintestinaleOX=36845GN=HZF06_06290PE=3SV=1	REV__tr|A0A7D6ZW15|A0A7D6ZW15_9CLOTAminotransferaseclassIVOS=ClostridiumintestinaleOX=36845GN=HZF06_06290PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	583.3357543945312	2	583.334424	1164.6543	0.53924	0.00031456	1.4516	0.00084675	1.9908	0.0011613	583.3350523286123	152.76	2.0618	152.76	152.26	154.32	0					93	45	4	0	0	0	0.22621	1	17888	17888		71.877	10.906	1	306560	+		65118	32270	53673	53725	71714	71714					0.07855462062548213
YPIGGFLLI	9	Unmodified	_YPIGGFLLI_					0	0	0			REV__ENSG00000084073|ENST00000372759|ZMPSTE24;REV__ZMPSTE24-CAP1|1|fusion	REV__ENSG00000084073|ENST00000372759|ZMPSTE24	MULTI-MSMS	OvCa99_classI_Rep5	1	496.7936706542969	2	496.794404	991.574254	1.4094	0.00070018	-3.5588	-0.001768	-2.1494	-0.0010678	496.7924735229611	115.22	0.74865	115.22	114.98	115.73	0					32	15	3	0	0	0	0.32242	1	13152	13152		60.404	13.637	1	446860	+		65119	17116;32772	53674	53726	71715	71715					0.07813020459389008
YPIGGFLLI	9	Unmodified	_YPIGGFLLI_					0	0	0			REV__ENSG00000084073|ENST00000372759|ZMPSTE24;REV__ZMPSTE24-CAP1|1|fusion	REV__ENSG00000084073|ENST00000372759|ZMPSTE24	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	496.794404	991.574254	1.4094	0.00070018	-3.5588	-0.001768	-2.1494	-0.0010678	496.7924735229611	115.22	0.74865	115.22	114.98	115.73	0	0	0	NaN	60.404	32	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	446860	+		65120	17116;32772	53674	53726							0.07813020459389008
YPIMLSMIGI	10	2 Oxidation (M)	_YPIM(Oxidation (M))LSM(Oxidation (M))IGI_		YPIM(1)LSM(1)IGI		YPIM(46)LSM(46)IGI	0	0	2			REV__tr|A0A7D6W0Y3|A0A7D6W0Y3_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=celBPE=4SV=1	REV__tr|A0A7D6W0Y3|A0A7D6W0Y3_9CLOTPermeaseIICcomponentOS=ClostridiumintestinaleOX=36845GN=celBPE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	585.2963256835938	2	585.300878	1168.5872	-8.1394	-0.004764	2.3865	0.0013968	-5.7529	-0.0033672	585.3021131767972	159.74	2.4811	158.41	157.6	160.08	-1.3316					78	48	2	0	0	0	0.56767	1	13824	13824		45.952	8.7928	1	94558	+		65121	31868	53675	53727	71716	71716		707;708			0.009653474649439886
YPINWGLPG	9	Unmodified	_YPINWGLPG_					0	0	0			REV__ENSG00000158486|ENST00000698260|DNAH3;REV__ENSG00000174844|ENST00000495027|DNAH12;REV__nc|ENSG00000124721|Q96JB1-2|DNAH8;REV__ENSG00000118997|ENST00000312428|DNAH7	REV__nc|ENSG00000124721|Q96JB1-2|DNAH8	MULTI-SECPEP	OvCa99_classI_Rep5	1	508.8199462890625	2	508.763635	1015.51272	2.2257	0.0011324	-1.4121	-0.00071843	0.81363	0.00041394	508.7634933731718	82.531	1.054	82.531	81.895	82.949	0					49	24	3	0	0	0	0.027462	1	8600	8600		31.955	3.7006	1	519290	+		65122	18702;18424;20568;21856	53676	53728	71717	71717					0.0055808876010132735
YPIPHVPREVP	11	Unmodified	_YPIPHVPREVP_					0	0	0		ENSG00000147596|ENST00000276594|PRDM14	ENSG00000147596|ENST00000276594|PRDM14	ENSG00000147596|ENST00000276594|PRDM14	MULTI-MSMS	OvCa99_classI_Rep5	1	435.24200439453125	3	435.243429	1302.70846	-0.021636	-9.4171E-06	-2.783	-0.0012113	-2.8047	-0.0012207	435.24218716737255	25.769	0.44856	25.769	25.594	26.042	0					18	8	4	0	0	0	0.69424	1	613	613		31.634	0	1	189470			65123	5365	53677	53729	71718	71718					0.06921054214126343
YPIRNVLL	8	Unmodified	_YPIRNVLL_					0	0	0			REV__LIPN|p.H373Sfs*20|1|0.09|ENSG00000204020|chr10:88778160-88778161|-/TT|frameshift_variant	REV__LIPN|p.H373Sfs*20|1|0.09|ENSG00000204020|chr10:88778160-88778161|-/TT|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	494.3013610839844	2	494.302927	986.591301	-1.9153	-0.00094676	1.6122	0.0007969	-0.30317	-0.00014986	494.3035822821236	126.59	0.78967	125.18	124.92	125.71	-1.4143					35	15	3	0	0	0	0.73288	1	12058	12058		35.201	1.7077	1	83416	+		65124	23121	53678	53730	71719	71719					0.09746941065179726
YPIVVFFIPE	10	Unmodified	_YPIVVFFIPE_					0	0	0		nc|ENSG00000105289|O95049-5|TJP3;ENSG00000105289|ENST00000541714|TJP3;nc|ENSG00000105289|O95049-4|TJP3;nc|ENSG00000105289|O95049-3|TJP3	nc|ENSG00000105289|O95049-5|TJP3	nc|ENSG00000105289|O95049-5|TJP3	MULTI-MSMS	OvCa9_classI_Rep4_	4	612.3458862304688	2	612.339175	1222.6638	1.9498	0.001194	3.827	0.0023434	5.7768	0.0035374	612.3421572529692	138.46	0.59343	136.93	136.79	137.38	-1.5284					23	12	3	0	0	0	0.68695	1	13490	13490		31.955	6.5047	1	27994			65125	2439	53679	53731	71720	71720					0.061372303481221024
YPKERKSVYQ	10	Unmodified	_YPKERKSVYQ_					0	0	0		L1MA2_dup458|chr1:227783992-227784718:-|1.1741422800325727|0.4119820528890241|1.51|429.0|17|3|sense	L1MA2_dup458|chr1:227783992-227784718:-|1.1741422800325727|0.4119820528890241|1.51|429.0|17|3|sense	L1MA2_dup458|chr1:227783992-227784718:-|1.1741422800325727|0.4119820528890241|1.51|429.0|17|3|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	649.3577880859375	2	649.348594	1296.68264	1.8902	0.0012274	3.6174	0.0023489	5.5076	0.0035764	649.3508931970288	135.01	2.7966	135.01	134.65	137.45	0					102	59	2	0	0	0	0.48398	1	15800	15800		56.434	7.8322	1	8858500			65126	14574	53680	53732	71721	71721					0.0461615997185163
YPKGKESL	8	Unmodified	_YPKGKESL_					0	0	0			REV__ENSG00000117153|ENST00000367261|KLHL12	REV__ENSG00000117153|ENST00000367261|KLHL12	MULTI-MSMS	OvCa99_classI_Rep5	1	461.2568664550781	2	461.255643	920.496732	-1.1406	-0.00052612	1.335	0.00061579	0.19439	8.9666E-05	461.2560290986598	70.067	0.9253	70.067	69.756	70.681	0					44	22	3	0	0	0	0.30448	1	6697	6697		106.42	0	1	2010500	+		65127	18341	53681	53733	71722	71722					0.033303825231769224
YPKGKESL	8	Unmodified	_YPKGKESL_					0	0	0			REV__ENSG00000117153|ENST00000367261|KLHL12	REV__ENSG00000117153|ENST00000367261|KLHL12	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	461.255643	920.496732	-1.1406	-0.00052612	1.335	0.00061579	0.19439	8.9666E-05	461.2560290986598	70.067	0.9253	70.067	69.756	70.681	0	-0.14763	0.00042404	NaN	106.42	44	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2010500	+		65128	18341	53681	53733							0.033303825231769224
YPKGKESL	8	Unmodified	_YPKGKESL_					0	0	0			REV__ENSG00000117153|ENST00000367261|KLHL12	REV__ENSG00000117153|ENST00000367261|KLHL12	MULTI-MATCH	OvCa9_classI_Rep2	2		2	461.255643	920.496732	0.046346	2.1377E-05	0.33502	0.00015453	0.38137	0.00017591	461.2555603817224	72.699	0.83292	70.299	69.854	70.687	-2.3999	0.083988	-0.00049848	NaN	106.42	25	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	23043	+		65129	18341	53681	53733							0.033303825231769224
YPKGKESL	8	Unmodified	_YPKGKESL_					0	0	0			REV__ENSG00000117153|ENST00000367261|KLHL12	REV__ENSG00000117153|ENST00000367261|KLHL12	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	461.255643	920.496732	-1.2704	-0.00058598	0.82721	0.00038156	-0.44318	-0.00020442	461.2559221677575	73.675	0.85562	70.278	69.979	70.834	-3.3961	0.063644	-4.4424E-05	NaN	106.42	26	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	84150	+		65130	18341	53681	53733							0.033303825231769224
YPKKKKMRWKK	11	Unmodified	_YPKKKKMRWKK_					0	0	0		ENSG00000139865|ENST00000553443|TTC6;ENST00000533625.5_1_14:38165939-38343677:+|nuORF	ENSG00000139865|ENST00000553443|TTC6	ENSG00000139865|ENST00000553443|TTC6	MULTI-SECPEP	OvCa9_classI_Rep4_	4	507.3107604980469	3	507.646391	1519.91734	-6.7239	-0.0034134	2.375	0.0012057	-4.3489	-0.0022077	507.6475251827244	160.69	1.8844	159.08	157.75	159.63	-1.6101					53	41	2	0	0	0	0.02653	1	15872	15872		6.3209	2.7018	1	20659			65131	4807	53682	53734	71723	71723					0.17818179246546606
YPKLDLLKI	9	Unmodified	_YPKLDLLKI_					0	0	0			REV__nc|ENSG00000111880|O60942-2|RNGTT	REV__nc|ENSG00000111880|O60942-2|RNGTT	MULTI-MSMS	OvCa9_classI_Rep3	3	551.8486938476562	2	551.847167	1101.67978	-1.1792	-0.00065073	0.85124	0.00046975	-0.32795	-0.00018098	551.8476297983528	101.97	0.99301	100.45	100.11	101.1	-1.5211					62	18	4	0	0	0	0.14445	1	7004	7004		85.862	22.328	1	380610	+		65132	18068	53683	53735	71724	71724					0.13300936584982992
YPKRPLLGL	9	Unmodified	_YPKRPLLGL_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	OvCa9_classI_Rep2	2	528.8311157226562	2	528.831852	1055.64915	-0.18956	-0.00010025	-0.80035	-0.00042325	-0.98991	-0.0005235	528.8313269805972	82.617	1.785	81.018	80.54	82.325	-1.5988					96	35	5	0	0	0	0.14739	4	7055	7039;7049;7055;7063		85.359	20.623	1	1158600			65133	1827	53684	53736	71725;71726;71727;71728	71727					0.12355202990602265
YPKRPLLGL	9	Unmodified	_YPKRPLLGL_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	OvCa9_classI_Rep3	3	528.8319702148438	2	528.831852	1055.64915	-1.2605	-0.00066662	-0.24874	-0.00013154	-1.5093	-0.00079816	528.8315788748213	83.741	3.631	81.48	80.867	84.498	-2.261					148	74	4	0	0	0	0.14739	6	4796	4796;4802;4813;4826;4832;4844		85.359	11.385	1	1382900			65134	1827	53684	53736	71729;71730;71731;71732;71733;71734	71729					0.12355202990602265
YPKRPLLGL	9	Unmodified	_YPKRPLLGL_					0	0	0		ENSG00000089737|ENST00000621632|DDX24;ENST00000555762.1_1_14:94524146-94547480:-|nuORF;nc|ENSG00000089737|Q9GZR7-2|DDX24	ENSG00000089737|ENST00000621632|DDX24	ENSG00000089737|ENST00000621632|DDX24	MULTI-MSMS	OvCa9_classI_Rep4_	4	528.832763671875	2	528.831852	1055.64915	-0.25113	-0.00013281	-0.64029	-0.00033861	-0.89142	-0.00047141	528.8313428149975	84.103	2.0577	81.441	80.681	82.738	-2.6629					115	42	4	0	0	0	0.14739	2	7024	7011;7024		85.359	22.053	1	1108700			65135	1827	53684	53736	71735;71736	71736					0.12355202990602265
YPKSLPKGWIA	11	Unmodified	_YPKSLPKGWIA_					0	0	0		ENST00000539109.1_1_12:67664216-67664306:+|nuORF	ENST00000539109.1_1_12:67664216-67664306:+|nuORF	ENST00000539109.1_1_12:67664216-67664306:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	630.8609619140625	2	630.360973	1258.70739	2.3054	0.0014533	-2.4505	-0.0015447	-0.14511	-9.1469E-05	630.3588948880537	117.75	0.9779	117.75	117.41	118.39	0					41	20	4	0	0	0	0.61983	1	13474	13474		42.864	0.46813	1	1234100			65136	13431	53685	53737	71737	71737					0.08838839845225266
YPKSLPKGWIA	11	Unmodified	_YPKSLPKGWIA_					0	0	0		ENST00000539109.1_1_12:67664216-67664306:+|nuORF	ENST00000539109.1_1_12:67664216-67664306:+|nuORF	ENST00000539109.1_1_12:67664216-67664306:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	630.360973	1258.70739	-2.0051	-0.0012639	-1.7662	-0.0011133	-3.7713	-0.0023773	630.3595516207538	117.83	0.44746	117.68	117.44	117.89	-0.14755	-0.036368	0.0012528	NaN	42.864	14	8	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17779			65137	13431	53685	53737							0.08838839845225266
YPKSLPKGWIA	11	Unmodified	_YPKSLPKGWIA_					0	0	0		ENST00000539109.1_1_12:67664216-67664306:+|nuORF	ENST00000539109.1_1_12:67664216-67664306:+|nuORF	ENST00000539109.1_1_12:67664216-67664306:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	630.360973	1258.70739	0.50222	0.00031658	-5.0631	-0.0031916	-4.5609	-0.002875	630.3574652257353	118.83	0.54457	117.81	117.44	117.98	-1.0271	0.089813	-0.0029038	NaN	42.864	15	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	18822			65138	13431	53685	53737							0.08838839845225266
YPKSLPKGWIA	11	Unmodified	_YPKSLPKGWIA_					0	0	0		ENST00000539109.1_1_12:67664216-67664306:+|nuORF	ENST00000539109.1_1_12:67664216-67664306:+|nuORF	ENST00000539109.1_1_12:67664216-67664306:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	630.360973	1258.70739	-1.2542	-0.00079059	-2.6769	-0.0016874	-3.9311	-0.002478	630.3590649923998	118.98	0.46375	117.63	117.42	117.88	-1.3444	-0.084421	0.00010462	NaN	42.864	16	8	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21808			65139	13431	53685	53737							0.08838839845225266
YPLAAGALLQ	10	Unmodified	_YPLAAGALLQ_					0	0	0		ENST00000366641.3_1_1:231558345-231558453:-|nuORF	ENST00000366641.3_1_1:231558345-231558453:-|nuORF	ENST00000366641.3_1_1:231558345-231558453:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	509.24139404296875	2	508.792392	1015.57023	0.008925	4.541E-06	-4.4713	-0.0022749	-4.4623	-0.0022704	508.79035218269286	60.882	0.83649	57.452	57.294	58.131	-3.43					23	16	2	0	0	0	0.02649	1	4220	4220		51.335	5.3632	1	105670			65140	10824	53686	53738	71738	71738					0.06306930965661195
YPLHHPSF	8	Unmodified	_YPLHHPSF_					0	0	0		tr|A0A553STY2|A0A553STY2_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05845PE=4SV=1	tr|A0A553STY2|A0A553STY2_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05845PE=4SV=1	tr|A0A553STY2|A0A553STY2_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05845PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	499.2497863769531	2	499.248152	996.481751	2.0486	0.0010228	0.22755	0.0001136	2.2762	0.0011364	499.24810602999514	120.28	3.1366	120.28	120	123.14	0					173	70	4	0	0	0	0.59103	1	13954	13954		65.897	2.919	1	6606300			65141	34549	53687	53739	71739	71739					-0.016630645541454214
YPLHHPSF	8	Unmodified	_YPLHHPSF_					0	0	0		tr|A0A553STY2|A0A553STY2_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05845PE=4SV=1	tr|A0A553STY2|A0A553STY2_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05845PE=4SV=1	tr|A0A553STY2|A0A553STY2_NIACIAmidohydrolaseOS=NialliacirculansOX=1397GN=CEQ21_05845PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	499.25054931640625	2	499.248152	996.481751	0.74535	0.00037211	1.8051	0.00090119	2.5505	0.0012733	499.2485983298839	158.11	1.5358	158.11	157.65	159.19	0					84	31	4	0	0	0	0.74971	1	18513	18513		26.796	0	1	141510			65142	34549	53687	53739	71740	71740					-0.016630645541454214
YPLILLILP	9	Unmodified	_YPLILLILP_					0	0	0			REV__nc|ENSG00000167904|Q96MH6-3|TMEM68	REV__nc|ENSG00000167904|Q96MH6-3|TMEM68	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.2871704101562	2	527.849179	1053.6838	-0.58835	-0.00031056	-3.9119	-0.0020649	-4.5003	-0.0023755	527.8471114436347	89.263	1.0862	86.661	86.336	87.422	-2.6027					43	21	3	0	0	0	0.027462	1	7713	7713		39.021	17.319	1	105540	+		65143	21317	53688	53740	71741	71741					0.15911026078697432
YPLILLILP	9	Unmodified	_YPLILLILP_					0	0	0			REV__nc|ENSG00000167904|Q96MH6-3|TMEM68	REV__nc|ENSG00000167904|Q96MH6-3|TMEM68	MULTI-MATCH	OvCa9_classI_Rep2	2		2	527.849179	1053.6838	1.2958	0.00068399	-5.8101	-0.0030668	-4.5143	-0.0023829	527.8460132875448	87.9	0.8331	86.469	86.189	87.022	-1.4311	-0.15686	-0.00098325	NaN	39.021	42	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88018	+		65144	21317	53688	53740							0.15911026078697432
YPLILLILP	9	Unmodified	_YPLILLILP_					0	0	0			REV__nc|ENSG00000167904|Q96MH6-3|TMEM68	REV__nc|ENSG00000167904|Q96MH6-3|TMEM68	MULTI-MATCH	OvCa9_classI_Rep3	3		2	527.849179	1053.6838	-0.81516	-0.00043028	-3.7013	-0.0019537	-4.5165	-0.002384	527.8471730642315	88.879	1.1269	86.748	86.364	87.491	-2.1309	0.12235	0.0012429	NaN	39.021	50	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	142900	+		65145	21317	53688	53740							0.15911026078697432
YPLIPEALV	9	Unmodified	_YPLIPEALV_					0	0	0			REV__ENST00000579988.1_1_17:70643725-70721657:-|nuORF	REV__ENST00000579988.1_1_17:70643725-70721657:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	507.79925537109375	2	507.797143	1013.57973	0.76605	0.000389	1.3416	0.00068128	2.1077	0.0010703	507.79771031912594	151.81	2.0457	151.81	151.4	153.45	0					106	45	4	0	0	0	0.47884	1	17751	17751		44.531	0	1	1456700	+		65146	19135	53689	53741	71742	71742					0.07348699251190283
YPLLQPHLL	9	Unmodified	_YPLLQPHLL_					0	0	0		ENST00000491554.6_1_15:40716399-40727929:+|nuORF;ENST00000481262.6_1_15:40705272-40727929:+|nuORF	ENST00000491554.6_1_15:40716399-40727929:+|nuORF	ENST00000491554.6_1_15:40716399-40727929:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	547.323974609375	2	547.32386	1092.63317	0.98261	0.00053781	-1.2091	-0.00066178	-0.22651	-0.00012397	547.322945822617	124.52	2.7629	123.47	123.07	125.83	-1.0519					146	52	5	0	0	0	0.19716	1	9691	9691		76.847	0.072494	1	472590			65147	12542	53690	53742	71743	71743					0.0905549675369457
YPLLSSTLKSL	11	Unmodified	_YPLLSSTLKSL_					0	0	0		ENST00000305124.10_1_3:115439739-115439862:+|nuORF	ENST00000305124.10_1_3:115439739-115439862:+|nuORF	ENST00000305124.10_1_3:115439739-115439862:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	611.3540649414062	2	611.358096	1220.70164	-3.7398	-0.0022864	0.47754	0.00029195	-3.2623	-0.0019944	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.71789	1	15126	15126		23.523	0.48021	1	331570			65148	10233	53691	53743	71744	71744					0.1001169654291516
YPLMEEIGF	9	Unmodified	_YPLMEEIGF_					0	0	0		ENSG00000151151|ENST00000373935|IPMK	ENSG00000151151|ENST00000373935|IPMK	ENSG00000151151|ENST00000373935|IPMK	MULTI-MSMS	OvCa99_classI_Rep5	1	549.765869140625	2	549.762443	1097.51033	1.3622	0.00074889	0.30814	0.0001694	1.6703	0.00091829	549.7624849600941	148.94	1.5677	148.94	147.98	149.55	0					83	31	3	0	0	0	0.39645	1	17444	17444		52.299	4.3836	1	182690			65149	5538	53692	53744	71745	71745					-0.03452127759874202
YPLPLHKIV	9	Unmodified	_YPLPLHKIV_					0	0	0			REV__ENSG00000112367|ENST00000230124|FIG4	REV__ENSG00000112367|ENST00000230124|FIG4	MULTI-MSMS	OvCa9_classI_Rep3	3	540.3331909179688	2	540.334227	1078.6539	0.71527	0.00038649	-0.87238	-0.00047138	-0.15711	-8.4892E-05	540.3335173912039	131.44	2.5576	130.32	129.91	132.47	-1.1249					119	51	4	0	0	0	0.53957	1	10542	10542		38.806	0.99462	1	239410	+		65150	18097	53693	53745	71746	71746					0.1177208713336313
YPLPRLRP	8	Unmodified	_YPLPRLRP_					0	0	0		ENST00000254323.6_1_19:13928072-13928740:+|nuORF	ENST00000254323.6_1_19:13928072-13928740:+|nuORF	ENST00000254323.6_1_19:13928072-13928740:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	506.329345703125	2	506.308544	1010.60253	1.8689	0.00094622	-3.5475	-0.0017961	-1.6787	-0.00084993	506.3066062769558	136.89	1.196	135.35	135.08	136.28	-1.5437					40	24	2	0	0	0	0.028476	1	13330	13330		37.028	1.8278	1	54601			65151	9809	53694	53746	71747	71747					0.0976576315931652
YPLPRLRP	8	Unmodified	_YPLPRLRP_					0	0	0		ENST00000254323.6_1_19:13928072-13928740:+|nuORF	ENST00000254323.6_1_19:13928072-13928740:+|nuORF	ENST00000254323.6_1_19:13928072-13928740:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	506.308544	1010.60253	-0.61357	-0.00031066	-0.84051	-0.00042556	-1.4541	-0.00073621	506.3078893246642	135.86	0.88396	135.64	135.37	136.26	-0.22696	0.16886	0.00080447	NaN	37.028	29	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41749			65152	9809	53694	53746							0.0976576315931652
YPLPRLRP	8	Unmodified	_YPLPRLRP_					0	0	0		ENST00000254323.6_1_19:13928072-13928740:+|nuORF	ENST00000254323.6_1_19:13928072-13928740:+|nuORF	ENST00000254323.6_1_19:13928072-13928740:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	506.308544	1010.60253	-1.656	-0.00083844	-0.2069	-0.00010476	-1.8629	-0.0009432	506.30832617612737	136.52	0.73755	135.42	135.19	135.93	-1.1076	-0.049945	0.0014461	NaN	37.028	27	14	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	57142			65153	9809	53694	53746							0.0976576315931652
YPLYHFLLC	9	Unmodified	_YPLYHFLLC_					0	0	0		L1P3_dup682|chr3:196908842-196910335:+|1.1693758815815145|0.2885488685750818|2.02|428.0|59|1|anti-sense;L1PA3_dup1152|chr2:117623254-117629278:+|1.1606400945596698|0.0841542146032081|3.79|394.0|268|2|anti-sense;L1PA3_dup10510|chr20:40619323-40625356:+|1.448906025747238|0.1317034148076854|3.46|417.0|250|2|anti-sense;L1PA2_dup23|chr1:43114528-43120516:-|1.3533449411662286|0.3152228216366226|2.1|404.0|199|1|anti-sense;L1PA2_dup1619|chr5:71851116-71854174:+|2.376726425342643|0.0208621851436049|6.83|429.0|189|3|anti-sense;L1HS_dup1616|chr22:28663284-28669315:+|1.4529307293818696|0.2468976263073953|2.56|411.0|249|2|anti-sense;L1PA7_dup7105|chr8:140902960-140905176:-|1.928403484305532|0.1763547852274372|3.45|429.0|134|3|anti-sense	L1P3_dup682|chr3:196908842-196910335:+|1.1693758815815145|0.2885488685750818|2.02|428.0|59|1|anti-sense	L1P3_dup682|chr3:196908842-196910335:+|1.1693758815815145|0.2885488685750818|2.02|428.0|59|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep2	2	584.306396484375	2	584.79662	1167.57869	-1.13	-0.00066083	-2.7724	-0.0016213	-3.9024	-0.0022821	584.7942536275435	100.4	0.59524	99.574	99.261	99.856	-0.83051					14	11	2	0	0	0	0.027462	1	9171	9171		29.842	0	1	16198			65154	14532	53695	53747	71748	71748					0.0016016161064271728
YPMVFMIDPE	10	Oxidation (M)	_YPM(Oxidation (M))VFMIDPE_		YPM(1)VFMIDPE		YPM(37)VFM(-37)IDPE	0	0	1		tr|A0A553SSL6|A0A553SSL6_NIACIDUF1861familyproteinOS=NialliacirculansOX=1397GN=CEQ21_03215PE=4SV=1	tr|A0A553SSL6|A0A553SSL6_NIACIDUF1861familyproteinOS=NialliacirculansOX=1397GN=CEQ21_03215PE=4SV=1	tr|A0A553SSL6|A0A553SSL6_NIACIDUF1861familyproteinOS=NialliacirculansOX=1397GN=CEQ21_03215PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	629.2777099609375	2	629.280143	1256.54573	-1.1065	-0.00069631	-2.3011	-0.001448	-3.4076	-0.0021443	629.2787761772053	118.5	2.2976	117.16	116.89	119.19	-1.3444					117	43	5	0	0	0	0.39971	1	11126	11126		68.485	11.764	2	542100			65155	34389	53696	53748	71749	71749		759			-0.07227833294382435
YPNIRYHLY	9	Unmodified	_YPNIRYHLY_					0	0	0		tr|A0A553SUD3|A0A553SUD3_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_06710PE=3SV=1	tr|A0A553SUD3|A0A553SUD3_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_06710PE=3SV=1	tr|A0A553SUD3|A0A553SUD3_NIACILysRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_06710PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	620.2691040039062	2	619.819473	1237.62439	1.8754	0.0011624	0.70353	0.00043606	2.5789	0.0015984	619.8199327694674	95.3	0.37682	95.3	95.161	95.538	0					15	8	3	0	0	0	0.027417	1	10410	10410		55.504	4.1688	1	315100			65156	34596	53697	53749	71750	71750					0.015085231172179192
YPNRIFGM	8	Unmodified	_YPNRIFGM_					0	0	0		tr|A0A553SU39|A0A553SU39_NIACIAmidohydrolase-relateddomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06285PE=4SV=1	tr|A0A553SU39|A0A553SU39_NIACIAmidohydrolase-relateddomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06285PE=4SV=1	tr|A0A553SU39|A0A553SU39_NIACIAmidohydrolase-relateddomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06285PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	499.24896240234375	2	499.249837	996.485122	2.0486	0.0010228	-3.1483	-0.0015718	-1.0997	-0.00054904	499.24810602999514	120.28	3.1366	120.28	120	123.14	0					173	70	4	0	0	0	0.73288	1	14002	14002		35.201	1.6851	1	6606300			65157	34565	53698	53750	71751	71751					-0.013261377717867617
YPNSYPGRYV	10	Unmodified	_YPNSYPGRYV_					0	0	0			REV__ENSG00000140092|ENST00000342058|FBLN5	REV__ENSG00000140092|ENST00000342058|FBLN5	MULTI-MSMS	OvCa9_classI_Rep3	3	608.2964477539062	2	608.293288	1214.57202	3.6539	0.0022227	1.966	0.0011959	5.6199	0.0034186	608.2942855637167	59.026	3.3501	55.911	55.036	58.386	-3.1147					203	93	3	0	0	0	0.79213	1	1833	1833		19.997	0	1	283460	+		65158	19654	53699	53751	71752	71752					-0.026680600163899726
YPNVFLVFL	9	Unmodified	_YPNVFLVFL_					0	0	0		ENSG00000013503|ENST00000228347|POLR3B;nc|ENSG00000013503|Q9NW08-2|POLR3B;POLR3B|p.L708Tfs*13|1|0.06|ENSG00000013503|chr12:106454510-106454511|-/GATACAACCAGCGAAACAGAATT|frameshift_variant	ENSG00000013503|ENST00000228347|POLR3B	ENSG00000013503|ENST00000228347|POLR3B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	556.2569580078125	2	556.312961	1110.61137	0.29929	0.0001665	-4.4509	-0.0024761	-4.1516	-0.0023096	556.3110252938831	89.194	0.24155	86.592	86.483	86.725	-2.6027					6	4	2	0	0	0	0.027462	1	7653	7653		38.806	8.4884	1	28560			65159	987	53700	53752	71753	71753					0.06048692005128942
YPPARKRI	8	Unmodified	_YPPARKRI_					0	0	0			REV__MGA|p.C1047Y|1|0.05|ENSG00000174197|chr15:41713206-41713206|G/A|missense_variant	REV__MGA|p.C1047Y|1|0.05|ENSG00000174197|chr15:41713206-41713206|G/A|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	501.2890319824219	2	500.806168	999.597784	1.6308	0.0008167	-3.866	-0.0019361	-2.2352	-0.0011194	500.804169138439	137.45	0.75368	135.91	135.67	136.42	-1.5437					26	15	2	0	0	0	0.028476	1	13375	13375		35.201	22.994	1	27502	+		65160	28666	53701	53753	71754	71754					0.09796879016550974
YPPIHRSFEE	10	Unmodified	_YPPIHRSFEE_					0	0	0			REV__ENSG00000140450|ENST00000268042|ARRDC4	REV__ENSG00000140450|ENST00000268042|ARRDC4	MULTI-MSMS	OvCa9_classI_Rep4_	4	638.316162109375	2	637.811845	1273.60914	-2.639	-0.0016832	3.9499	0.0025193	1.3109	0.00083608	638.3164734531277	150.96	1.6574	149.52	148.42	150.08	-1.4344					111	36	4	0	0	0	0.67931	1	14908	14908		32.812	7.2384	1	33284	+		65161	19672	53702	53754	71755	71755					-0.01672388470592523
YPPKLHQF	8	Unmodified	_YPPKLHQF_					0	0	0		chr19:29812776-29812978|402|19.78|0.44|5.5|+|ENST00000575243|CCNE1,CCNE1;chr19:29821817-29822240|415|28.89|0.48|5.91|+|ENST00000576532|CCNE1,CCNE1;nc|ENSG00000105173|P24864-2|CCNE1;nc|ENSG00000105173|P24864-3|CCNE1;ENSG00000105173|ENST00000262643|CCNE1	chr19:29812776-29812978|402|19.78|0.44|5.5|+|ENST00000575243|CCNE1,CCNE1	chr19:29812776-29812978|402|19.78|0.44|5.5|+|ENST00000575243|CCNE1,CCNE1	MULTI-MSMS	OvCa99_classI_Rep5	1	515.280517578125	2	515.279452	1028.54435	-0.13485	-6.9483E-05	0.34396	0.00017724	0.20912	0.00010775	515.7808363494132	73.533	1.9724	73.533	73.074	75.046	0					144	49	5	0	0	0	0.39692	4	7229	7223;7229;7259;7289		88.643	8.7036	1	16120000			65162	409	53703	53755	71756;71757;71758;71759	71757					0.031220815140159175
YPPLGPAKLY	10	Unmodified	_YPPLGPAKLY_					0	0	0			REV__ENSG00000212123|ENST00000419421|PRR22	REV__ENSG00000212123|ENST00000419421|PRR22	MULTI-MSMS	OvCa9_classI_Rep2	2	559.816162109375	2	559.815867	1117.61718	0.75444	0.00042235	-0.98145	-0.00054943	-0.22701	-0.00012708	559.8149429329505	132.97	1.1835	132.74	132.38	133.56	-0.22696					73	23	4	0	0	0	0.53885	1	13147	13147		49.442	7.0454	1	163000	+		65163	23246	53704	53756	71760	71760					0.06307790516802925
YPPLGPAKLY	10	Unmodified	_YPPLGPAKLY_					0	0	0			REV__ENSG00000212123|ENST00000419421|PRR22	REV__ENSG00000212123|ENST00000419421|PRR22	MULTI-MSMS	OvCa9_classI_Rep3	3	559.8163452148438	2	559.815867	1117.61718	-0.97774	-0.00054735	0.7702	0.00043117	-0.20754	-0.00011618	559.8160584775942	134.25	2.5628	133.13	132.52	135.08	-1.1226					125	51	4	0	0	0	0.49049	1	10823	10823		55.504	7.8469	1	225320	+		65164	23246	53704	53756	71761	71761					0.06307790516802925
YPPLRMPII	9	Unmodified	_YPPLRMPII_					0	0	0		nc|ENSG00000099797|Q9NZ01-2|TECR;ENST00000599101.5_1_19:14675534-14676680:+|nuORF;ENST00000593775.5_1_19:14675534-14676680:+|nuORF;ENSG00000099797|ENST00000215567|TECR;ENST00000598408.1_1_19:14675870-14676680:+|nuORF	nc|ENSG00000099797|Q9NZ01-2|TECR	nc|ENSG00000099797|Q9NZ01-2|TECR	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.322998046875	2	550.320263	1098.62597	-2.3581	-0.0012977	1.6529	0.00090962	-0.70522	-0.0003881	550.3210446039855	87.881	1.1084	85.266	84.965	86.073	-2.6146					57	21	3	0	0	0	0.30002	1	7491	7491		62.978	0	1	252930			65165	1978	53705	53757	71762	71762					0.08060440881649811
YPPPREQPSV	10	Unmodified	_YPPPREQPSV_					0	0	0			REV__ENSG00000074181|ENST00000263388|NOTCH3	REV__ENSG00000074181|ENST00000263388|NOTCH3	MULTI-MSMS	OvCa9_classI_Rep3	3	585.2962646484375	2	585.301113	1168.58767	-8.1394	-0.004764	1.9858	0.0011623	-6.1535	-0.0036017	585.3021131767972	159.74	2.4811	158.41	157.6	160.08	-1.3316					78	48	2	0	0	0	0.5675	1	13810	13810		45.972	7.1661	1	94558	+		65166	16947	53706	53758	71763	71763					0.010122265006430098
YPPPRISWL	9	Unmodified	_YPPPRISWL_					0	0	0		PDGFRA|p.R940Vfs*16|1|0.06|ENSG00000134853|chr4:54289051-54289052|-/GTGGATTCTACTTTCTACAATA|frameshift_variant;ENSG00000134853|ENST00000257290|PDGFRA;ENST00000509092.5_1_4:55124935-55146696:+|nuORF;nc|ENSG00000134853|P16234-3|PDGFRA	PDGFRA|p.R940Vfs*16|1|0.06|ENSG00000134853|chr4:54289051-54289052|-/GTGGATTCTACTTTCTACAATA|frameshift_variant	PDGFRA|p.R940Vfs*16|1|0.06|ENSG00000134853|chr4:54289051-54289052|-/GTGGATTCTACTTTCTACAATA|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep2	2	564.8098754882812	2	564.813659	1127.61277	-2.1858	-0.0012346	-3.4342	-0.0019397	-5.62	-0.0031743	564.8115908604212	146.02	1.2908	145.8	145.33	146.62	-0.22697					59	25	3	0	0	0	0.59983	1	14747	14747		31.955	1.6371	1	117310			65167	4339	53707	53759	71764	71764					0.054063260938846724
YPPWALLLMI	10	Unmodified	_YPPWALLLMI_					0	0	0		ENSG00000063127|ENST00000335875|SLC6A16;ENST00000454748.7_1_19:49793382-49793970:-|nuORF	ENSG00000063127|ENST00000335875|SLC6A16	ENSG00000063127|ENST00000335875|SLC6A16	MULTI-MSMS	OvCa99_classI_Rep5	1	608.84423828125	2	608.843571	1215.67259	0.90423	0.00055053	0.9685	0.00058967	1.8727	0.0011402	608.8438172445585	159.42	0.62334	159.42	159.09	159.71	0					32	12	4	0	0	0	0.65806	1	18677	18677		35.201	6.0307	1	136960			65168	1284	53708	53760	71765	71765					0.07337880712907463
YPQIPPTGPW	10	Unmodified	_YPQIPPTGPW_					0	0	0			REV__ENST00000570301.5_1_17:79349894-79358751:-|nuORF	REV__ENST00000570301.5_1_17:79349894-79358751:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	578.2903442382812	2	578.295299	1154.57605	-5.4887	-0.0031741	-4.2165	-0.0024384	-9.7053	-0.0056125	578.2927598597663	159.22	4.1126	158.99	158.53	162.64	-0.22697					262	82	5	0	0	0	0.52321	1	16151	16151		51.335	6.9583	1	1073400	+		65169	27738	53709	53761	71766	71766					0.004940294773177811
YPQIPPTGPW	10	Unmodified	_YPQIPPTGPW_					0	0	0			REV__ENST00000570301.5_1_17:79349894-79358751:-|nuORF	REV__ENST00000570301.5_1_17:79349894-79358751:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	578.289794921875	2	578.295299	1154.57605	-7.6021	-0.0043963	-2.1936	-0.0012685	-9.7957	-0.0056648	578.2938463676238	159.87	10.825	158.54	150.94	161.76	-1.3316					479	242	5	0	0	0	0.58282	2	14160	14160;14172		44.117	6.3053	1	1429200	+		65170	27738	53709	53761	71767;71768	71767					0.004940294773177811
YPQIPPTGPW	10	Unmodified	_YPQIPPTGPW_					0	0	0			REV__ENST00000570301.5_1_17:79349894-79358751:-|nuORF	REV__ENST00000570301.5_1_17:79349894-79358751:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2886352539062	2	578.295299	1154.57605	-7.6653	-0.0044328	-1.8323	-0.0010596	-9.4976	-0.0054924	578.2940529397285	163.97	0.95636	162.57	161.7	162.66	-1.3925					62	21	3	0	0	0	0.66721	1	14267	14267		34.173	3.6689	1	144290	+		65171	27738	53709	53761	71769	71769					0.004940294773177811
YPQIPPTGPW	10	Unmodified	_YPQIPPTGPW_					0	0	0			REV__ENST00000570301.5_1_17:79349894-79358751:-|nuORF	REV__ENST00000570301.5_1_17:79349894-79358751:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.289306640625	2	578.295299	1154.57605	-7.0214	-0.0040605	-2.7674	-0.0016004	-9.7888	-0.0056608	578.2935937226971	160.38	4.1596	158.77	158.05	162.21	-1.6101					391	105	5	0	0	0	0.33376	2	15923	15923;16098		76.774	3.3386	1	1912500	+		65172	27738	53709	53761	71770;71771	71770					0.004940294773177811
YPQKIKAEL	9	Unmodified	_YPQKIKAEL_					0	0	0		ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	ENSG00000132669|ENST00000255006|RIN2	ENSG00000132669|ENST00000255006|RIN2	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3179931640625	2	545.318774	1088.623	-1.828	-0.00099686	1.1653	0.00063545	-0.66275	-0.00036141	545.3193247612335	62.213	1.8935	59.454	58.882	60.775	-2.7593					104	36	5	0	0	0	0.051592	3	4644	4638;4644;4654		117.81	12.337	1	1098800			65173	4158	53710	53762	71772;71773;71774	71773					0.08222889028456848
YPQKIKAEL	9	Unmodified	_YPQKIKAEL_					0	0	0		ENSG00000132669|ENST00000255006|RIN2;nc|ENSG00000132669|Q8WYP3-2|RIN2	ENSG00000132669|ENST00000255006|RIN2	ENSG00000132669|ENST00000255006|RIN2	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.3193969726562	2	545.318774	1088.623	-0.88078	-0.0004803	0.11839	6.4558E-05	-0.76239	-0.00041575	545.3187982424363	63.028	1.7371	59.553	59.291	61.028	-3.475					105	35	5	0	0	0	0.033166	1	4406	4406		132.76	17.863	1	2714300			65174	4158	53710	53762	71775	71775					0.08222889028456848
YPQPLHVDP	9	Unmodified	_YPQPLHVDP_					0	0	0			REV__ENSG00000163870|ENST00000355552|TPRA1	REV__ENSG00000163870|ENST00000355552|TPRA1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	532.8211059570312	2	533.271824	1064.5291	-0.66465	-0.00035444	0.50407	0.00026881	-0.16058	-8.5634E-05	533.2725017423849	115.49	0.74177	114.09	113.77	114.51	-1.3977					18	14	2	0	0	0	0.027462	1	10756	10756		32.812	3.6629	1	28571	+		65175	20902	53711	53763	71776	71776					-0.0005883007381726202
YPQPLHVDP	9	Unmodified	_YPQPLHVDP_					0	0	0			REV__ENSG00000163870|ENST00000355552|TPRA1	REV__ENSG00000163870|ENST00000355552|TPRA1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	533.271824	1064.5291	-0.96463	-0.00051441	0.69695	0.00037166	-0.26768	-0.00014275	533.2728192975292	114.41	0.54238	114.3	114.01	114.55	-0.11777	0.12729	-6.7871E-05	NaN	25.574	16	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14864	+		65176	20902	53711	53763							-0.0005883007381726202
YPQPLHVDP	9	Unmodified	_YPQPLHVDP_					0	0	0			REV__ENSG00000163870|ENST00000355552|TPRA1	REV__ENSG00000163870|ENST00000355552|TPRA1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	533.271824	1064.5291	0.25303	0.00013493	1.0135	0.00054045	1.2665	0.00067538	533.2723660099903	115.17	0.88825	114.12	113.8	114.69	-1.055	-0.051193	0.0002697	NaN	25.574	20	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	16715	+		65177	20902	53711	53763							-0.0005883007381726202
YPQRPPVV	8	Unmodified	_YPQRPPVV_					0	0	0			REV__ENST00000302079.10_2_18:10803984-10807239:-|nuORF	REV__ENST00000302079.10_2_18:10803984-10807239:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	478.737060546875	2	478.271627	954.528701	-0.81477	-0.00038968	-4.3062	-0.0020595	-5.1209	-0.0024492	478.2681571627035	118.4	0.47318	117.06	116.73	117.21	-1.3444					13	8	2	0	0	0	0.028476	1	11106	11106		28.254	0	1	9366.2	+		65178	24255	53712	53764	71777	71777					0.0496179499699565
YPRGLVPRRL	10	Unmodified	_YPRGLVPRRL_					0	0	0		ENSG00000164134|ENST00000296543|NAA15;NAA15|p.E655Kfs*7|1|0.29|ENSG00000164134|chr4:139376379-139376379|G/-|frameshift_variant;nc|ENSG00000164134|Q9BXJ9-4|NAA15	ENSG00000164134|ENST00000296543|NAA15	ENSG00000164134|ENST00000296543|NAA15	MULTI-MSMS	OvCa9_classI_Rep3	3	409.5879821777344	3	409.58753	1225.74076	1.9489	0.00079826	-1.7862	-0.00073159	0.16277	6.667E-05	409.5866589829611	66.281	1.6712	63.335	62.959	64.63	-2.9459					68	32	4	0	0	0	0.7855	1	2725	2725		20.837	0.52214	1	144930			65179	6419	53713	53765	71778	71778					0.13691886407787024
YPRGRLSVHLR	11	Unmodified	_YPRGRLSVHLR_					0	0	0			REV__ENST00000406855.7_1_22:24177086-24180623:-|nuORF	REV__ENST00000406855.7_1_22:24177086-24180623:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	451.9327697753906	3	451.933588	1352.77894	-4.6838	-0.0021168	2.7151	0.001227	-1.9687	-0.00088973	451.93466630728255	157.42	2.9259	155.87	154.82	157.75	-1.545					169	85	3	0	0	0	0.72524	1	15598	15598		12.433	0	1	50469	+		65180	24420	53714	53766	71779	71779					0.11665772322430712
YPRLKVLAF	9	Unmodified	_YPRLKVLAF_					0	0	0		ENSG00000119777|ENST00000238788|TMEM214;nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENST00000460904.1_1_2:27259408-27260666:+|nuORF	ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	MULTI-MSMS	OvCa9_classI_Rep2	2	553.8385009765625	2	553.839677	1105.6648	-0.20085	-0.00011124	-0.43674	-0.00024188	-0.63758	-0.00035312	553.8393635694105	102.91	1.6773	102.23	101.79	103.46	-0.68459					110	33	4	0	0	0	0.27546	7	9507	9474;9479;9484;9491;9497;9507;9514		65.803	28.644	1	671320			65181	3394	53715	53767	71780;71781;71782;71783;71784;71785;71786	71785					0.11619489507643266
YPRLKVLAF	9	Unmodified	_YPRLKVLAF_					0	0	0		ENSG00000119777|ENST00000238788|TMEM214;nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENST00000460904.1_1_2:27259408-27260666:+|nuORF	ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8402709960938	2	553.839677	1105.6648	-0.088666	-4.9107E-05	-0.69203	-0.00038327	-0.78069	-0.00043238	553.8392963935497	104.35	2.2373	102.92	102.5	104.74	-1.4347					98	42	5	0	0	0	0.19716	4	7273	7255;7261;7273;7279		76.847	28.931	1	675710			65182	3394	53715	53767	71787;71788;71789;71790	71789					0.11619489507643266
YPRLKVLAF	9	Unmodified	_YPRLKVLAF_					0	0	0		ENSG00000119777|ENST00000238788|TMEM214;nc|ENSG00000119777|Q6NUQ4-2|TMEM214;ENST00000460904.1_1_2:27259408-27260666:+|nuORF	ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8392333984375	2	553.839677	1105.6648	-0.016139	-8.9384E-06	-0.74619	-0.00041327	-0.76233	-0.00042221	553.8392686016597	105.07	1.1078	103.05	102.64	103.74	-2.0161					72	21	4	0	0	0	0.44294	2	9524	9513;9524		47.916	9.0428	1	581570			65183	3394	53715	53767	71791;71792	71792					0.11619489507643266
YPRRQIAK	8	Unmodified	_YPRRQIAK_					0	0	0		nc|ENSG00000132872|Q9H2B2-2|SYT4;ENSG00000132872|ENST00000255224|SYT4	nc|ENSG00000132872|Q9H2B2-2|SYT4	nc|ENSG00000132872|Q9H2B2-2|SYT4	MULTI-SECPEP	OvCa9_classI_Rep2	2	517.2615356445312	2	516.309075	1030.6036	-0.83218	-0.00042966	-0.69647	-0.00035959	-1.5287	-0.00078926	516.3084992247773	55.407	0.94288	52.594	52.272	53.215	-2.8139					33	18	3	0	0	0	0.028476	1	3924	3924		28.254	0	1	114220			65184	4181	53716	53768	71793	71793					0.08951977528226962
YPRTGGTL	8	Unmodified	_YPRTGGTL_					0	0	0		nc|ENSG00000119522|Q8TEH3-7|DENND1A;nc|ENSG00000119522|Q8TEH3|DENND1A;ENSG00000119522|ENST00000394215|DENND1A;nc|ENSG00000119522|Q8TEH3-3|DENND1A;nc|ENSG00000119522|Q8TEH3-2|DENND1A;ENST00000373618.1_1_9:126520092-126692193:-|nuORF;DENND1A|p.I267Afs*14|1|0.26|ENSG00000119522|chr9:123583237-123583238|-/TGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGC|frameshift_variant	nc|ENSG00000119522|Q8TEH3-7|DENND1A	nc|ENSG00000119522|Q8TEH3-7|DENND1A	MULTI-MSMS	OvCa9_classI_Rep4_	4	432.7336120605469	2	432.732335	863.450116	-0.13449	-5.8199E-05	0.18612	8.0539E-05	0.051627	2.2341E-05	432.73231227352187	54.095	2.1988	50.848	50.415	52.614	-3.2474					82	42	3	0	0	0	0.40148	2	3339	3339;3352		87.754	29.943	1	735470			65185	14985	53717	53769	71794;71795	71794					0.012929426919072284
YPSASVLDVL	10	Unmodified	_YPSASVLDVL_					0	0	0			REV__tr|A0A7D6ZIG3|A0A7D6ZIG3_9CLOTPTSfructosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_06885PE=4SV=1	REV__tr|A0A7D6ZIG3|A0A7D6ZIG3_9CLOTPTSfructosetransportersubunitIIAOS=ClostridiumintestinaleOX=36845GN=HZF06_06885PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	532.2890014648438	2	532.28714	1062.55973	1.504	0.00080054	1.8194	0.00096845	3.3234	0.001769	532.2876458042824	98.353	0.79852	98.353	98.079	98.877	0					49	18	4	0	0	0	0.45225	1	10853	10853		60.972	8.0352	1	2647800	+		65186	32054	53718	53770	71796	71796					0.030949035205594555
YPSGFCLLSI	10	Unmodified	_YPSGFCLLSI_					0	0	0		CDC42BPB|p.S1423Ffs*2|1|0.11|ENSG00000198752|chr14:102944030-102944031|AG/-|frameshift_variant;ENSG00000198752|ENST00000361246|CDC42BPB	CDC42BPB|p.S1423Ffs*2|1|0.11|ENSG00000198752|chr14:102944030-102944031|AG/-|frameshift_variant	CDC42BPB|p.S1423Ffs*2|1|0.11|ENSG00000198752|chr14:102944030-102944031|AG/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	550.2783203125	2	550.27826	1098.54197	-0.26192	-0.00014413	2.1903	0.0012052	1.9283	0.0010611	550.279241634884	121.79	0.9691	120.44	120.11	121.08	-1.3479					49	18	4	0	0	0	0.62299	1	11493	11493		39.253	1.4413	1	81523			65187	208	53719	53771	71797	71797					-0.0033613500593219214
YPSGVIYDLLE	11	Unmodified	_YPSGVIYDLLE_					0	0	0		nc|ENSG00000104299|Q9NV88-3|INTS9;nc|ENSG00000104299|Q9NV88-2|INTS9;ENSG00000104299|ENST00000521022|INTS9;ENST00000520983.5_1_8:28651295-28747426:-|nuORF	nc|ENSG00000104299|Q9NV88-3|INTS9	nc|ENSG00000104299|Q9NV88-3|INTS9	MULTI-SECPEP	OvCa99_classI_Rep5	1	635.3745727539062	2	634.824086	1267.63362	1.9098	0.0012124	-1.6792	-0.001066	0.23055	0.00014636	634.8226470127291	118.84	0.70908	118.84	118.49	119.19	0					29	14	3	0	0	0	0.025909	1	13612	13612		34.173	0	1	205210			65188	2363	53720	53772	71798	71798					0.010508268921967101
YPSISWALNV	10	Unmodified	_YPSISWALNV_					0	0	0			REV__ENSG00000241973|ENST00000255882|PI4KA	REV__ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	OvCa9_classI_Rep3	3	575.29931640625	2	575.300581	1148.58661	-0.91231	-0.00052485	-2.994	-0.0017225	-3.9064	-0.0022473	575.2987938975226	98.512	0.72591	96.752	96.417	97.143	-1.7595					43	13	4	0	0	0	0.52439	1	6620	6620		51.193	3.965	1	1521200	+		65189	23452	53721	53773	71799	71799					0.018260121317553057
YPSLSTKMLF	10	Unmodified	_YPSLSTKMLF_					0	0	0			REV__ENST00000370982.3_1_1:68170560-68170689:-|nuORF	REV__ENST00000370982.3_1_1:68170560-68170689:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	592.842529296875	2	593.812467	1185.61038	1.8501	0.0010986	-3.6303	-0.0021557	-1.7802	-0.0010571	594.311786963681	129.37	1.2148	129.37	128.79	130.01	0					37	25	2	0	0	0	0.026635	1	15013	15013		66.429	5.4573	1	45577	+		65190	24973	53722	53774	71800	71800					0.025001095739298762
YPSNLPIPY	9	Unmodified	_YPSNLPIPY_					0	0	0		ENSG00000141579|ENST00000269394|ZNF750	ENSG00000141579|ENST00000269394|ZNF750	ENSG00000141579|ENST00000269394|ZNF750	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.278076171875	2	532.276575	1062.5386	-0.96518	-0.00051374	0.066718	3.5512E-05	-0.89846	-0.00047823	532.2764894278276	59.198	1.7363	55.806	55.2	56.936	-3.392					83	34	3	0	0	0	0.53957	1	3911	3911		38.806	1.647	1	508210			65191	4930	53723	53775	71801	71801					0.009829382117231944
YPSSHPPGR	9	Unmodified	_YPSSHPPGR_					0	0	0		ENSG00000067191|ENST00000394303|CACNB1	ENSG00000067191|ENST00000394303|CACNB1	ENSG00000067191|ENST00000394303|CACNB1	MULTI-MSMS	OvCa99_classI_Rep5	1	499.2492370605469	2	499.246141	996.477728	2.0486	0.0010228	4.2564	0.002125	6.305	0.0031477	499.24810602999514	120.28	3.1366	120.28	120	123.14	0					173	70	4	0	0	0	0.31747	1	13828	13828		60.972	6.2073	1	6606300			65192	1370	53724	53776	71802	71802					-0.02065154047852502
YPSSPRKAL	9	Unmodified	_YPSSPRKAL_					0	0	0		nc|ENSG00000197555|O43166-3|SIPA1L1;ENSG00000197555|ENST00000381232|SIPA1L1;nc|ENSG00000197555|O43166|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	nc|ENSG00000197555|O43166-3|SIPA1L1	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.78851318359375	2	509.787641	1017.56073	-0.7461	-0.00038035	-0.65617	-0.00033451	-1.4023	-0.00071486	509.7871621199848	101.45	1.9722	99.184	98.792	100.76	-2.2665					54	38	3	0	0	0	0.48324	1	9119	9119		44.117	1.2525	1	508430			65193	8721	53725	53777	71803	71803					0.05265162680132107
YPSVGWML	8	Unmodified	_YPSVGWML_					0	0	0		ENSG00000184560|ENST00000333870|SPEM2	ENSG00000184560|ENST00000333870|SPEM2	ENSG00000184560|ENST00000333870|SPEM2	MULTI-MSMS	OvCa99_classI_Rep5	1	476.7334289550781	2	476.733489	951.452425	2.0746	0.00098902	-3.6535	-0.0017418	-1.579	-0.00075274	476.731669470668	137.77	0.8573	137.77	137.45	138.31	0					29	18	2	0	0	0	0.68312	1	16065	16065		46.766	0.81448	1	92153			65194	8169	53726	53778	71804	71804					-0.02524344894652586
YPTHKIQEA	9	Unmodified	_YPTHKIQEA_					0	0	0		PUS7|p.K540T|1|0.24|ENSG00000091127|chr7:105465321-105465321|T/G|missense_variant	PUS7|p.K540T|1|0.24|ENSG00000091127|chr7:105465321-105465321|T/G|missense_variant	PUS7|p.K540T|1|0.24|ENSG00000091127|chr7:105465321-105465321|T/G|missense_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	542.7982788085938	2	543.782556	1085.55056	-0.4808	-0.00026145	2.9672	0.0016135	2.4864	0.0013521	543.784004968149	78.42	0.85433	75.603	75.165	76.019	-2.8165					36	17	3	0	0	0	0.027462	1	6285	6285		38.806	0	1	114110			65195	15533	53727	53779	71805	71805					0.01120554954900399
YPTIRDLLI	9	Unmodified	_YPTIRDLLI_					0	0	0			REV__ENSG00000196455|ENST00000356763|PIK3R4	REV__ENSG00000196455|ENST00000356763|PIK3R4	MULTI-MSMS	OvCa99_classI_Rep5	1	552.3264770507812	2	552.326599	1102.63865	2.1245	0.0011734	-0.22074	-0.00012192	1.9038	0.0010515	552.3264511784496	121.87	1.5228	121.87	121.57	123.09	0					93	32	5	0	0	0	0.14739	1	14012	14012		85.359	3.0545	1	7703000	+		65196	22828	53728	53780	71806	71806					0.09143175545523263
YPTPCQTYV	9	Unmodified	_YPTPCQTYV_					0	0	0		ENSG00000198854|ENST00000368775|C1orf68	ENSG00000198854|ENST00000368775|C1orf68	ENSG00000198854|ENST00000368775|C1orf68	MULTI-MSMS	OvCa9_classI_Rep3	3	536.245849609375	2	536.244418	1070.47428	0.97643	0.00052361	1.5461	0.00082907	2.5225	0.0013527	536.2452380983605	114.48	3.218	113.43	113.05	116.27	-1.055					122	64	2	0	0	0	0.40667	1	8521	8521		51.335	3.4199	1	980200			65197	8891	53729	53781	71807	71807					-0.058135849367545234
YPTPCQTYV	9	Unmodified	_YPTPCQTYV_					0	0	0		ENSG00000198854|ENST00000368775|C1orf68	ENSG00000198854|ENST00000368775|C1orf68	ENSG00000198854|ENST00000368775|C1orf68	MULTI-MSMS	OvCa9_classI_Rep4_	4	536.24560546875	2	536.244418	1070.47428	-0.42872	-0.0002299	2.9982	0.0016078	2.5695	0.0013779	536.2460282370151	114.83	3.7432	113.44	113.1	116.84	-1.3977					114	72	2	0	0	0	0.27546	1	10670	10670		65.803	0	1	971930			65198	8891	53729	53781	71808	71808					-0.058135849367545234
YPTSSTPLL	9	Unmodified	_YPTSSTPLL_					0	0	0		HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|27|1|sense	HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|27|1|sense	HERVH-int_dup3022|chr7:150307704-150312283:+|1.3022689957507934|0.1120723835863916|3.54|428.0|27|1|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	489.7620849609375	2	489.760758	977.506963	1.055	0.0005167	4.358	0.0021344	5.413	0.0026511	489.7627781359225	143.28	1.2373	143.28	143.07	144.31	0					38	24	2	0	0	0	0.25214	1	16737	16737		68.485	15.133	1	92148			65199	14418	53730	53782	71809	71809					0.017309454577798533
YPVALSRLV	9	Unmodified	_YPVALSRLV_					0	0	0			REV__ENST00000440082.5_1_7:30544246-30544390:-|nuORF	REV__ENST00000440082.5_1_7:30544246-30544390:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	509.30596923828125	2	509.30821	1016.60187	-3.8689	-0.0019705	-0.3316	-0.00016889	-4.2005	-0.0021393	509.30784512511417	146.87	1.2014	145.91	145.59	146.79	-0.95946					63	23	4	0	0	0	0.6959	1	12368	12368		19.36	1.995	1	121690	+		65200	25829	53731	53783	71810	71810					0.09422923719603205
YPVFKVLQK	9	Unmodified	_YPVFKVLQK_					0	0	0		chrX:141903978-141904717|146|30.42|0.11|8.08|+|0|MAGEC1,MAGEC1|2	chrX:141903978-141904717|146|30.42|0.11|8.08|+|0|MAGEC1,MAGEC1|2	chrX:141903978-141904717|146|30.42|0.11|8.08|+|0|MAGEC1,MAGEC1|2	MULTI-MSMS	OvCa9_classI_Rep4_	4	561.3397827148438	2	561.33951	1120.66447	2.9105	0.0016338	-3.045	-0.0017093	-0.1345	-7.5502E-05	561.3377133109354	138.18	1.1265	136.65	136.26	137.38	-1.5284					44	25	2	0	0	0	0.46377	1	13447	13447		45.952	8.1404	1	51962			65201	566	53732	53784	71811	71811					0.10896069787804663
YPVFRILTL	9	Unmodified	_YPVFRILTL_					0	0	0		nc|ENSG00000111801|O00478-2|BTN3A3;ENSG00000111801|ENST00000244519|BTN3A3;ENST00000082468.11_1_6:26410172-26413917:+|nuORF;ENST00000508906.6_3_6:26376811-26377501:+|nuORF;nc|ENSG00000026950|O00481-4|BTN3A1;ENSG00000026950|ENST00000289361|BTN3A1	nc|ENSG00000111801|O00478-2|BTN3A3;nc|ENSG00000026950|O00481-4|BTN3A1	nc|ENSG00000111801|O00478-2|BTN3A3	MULTI-MSMS	OvCa9_classI_Rep3	3	561.3399658203125	2	561.33951	1120.66447	-1.7513	-0.00098306	2.027	0.0011378	0.27571	0.00015477	561.3403149764221	137.83	1.0288	136.74	136.43	137.46	-1.0858					43	20	3	0	0	0	0.56189	1	11242	11242		36.447	4.9169	1	45230			65202	2855;1053	53733	53785	71812	71812					0.10896069787804663
YPVNGQPQ	8	Unmodified	_YPVNGQPQ_					0	0	0			REV__SIGLEC10|p.A388Sfs*71|1|0.1|ENSG00000142512|chr19:51415350-51415351|-/G|frameshift_variant	REV__SIGLEC10|p.A388Sfs*71|1|0.1|ENSG00000142512|chr19:51415350-51415351|-/G|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	451.2788391113281	2	451.721967	901.429381	1.9959	0.00090159	-2.4068	-0.0010872	-0.41096	-0.00018564	451.7207048546446	112.17	0.88667	111.07	110.75	111.63	-1.1038					25	17	2	0	0	0	0.028476	1	8147	8147		50.025	20.183	1	21509	+		65203	19788	53734	53786	71813	71813					-0.025276476877593268
YPVQQDQL	8	Unmodified	_YPVQQDQL_					0	0	0			REV__nc|ENSG00000064886|Q15782-6|CHI3L2	REV__nc|ENSG00000064886|Q15782-6|CHI3L2	MULTI-MSMS	OvCa99_classI_Rep5	1	495.749755859375	2	495.748182	989.481811	-0.026261	-1.3019E-05	-0.11124	-5.5145E-05	-0.1375	-6.8164E-05	495.74802854480777	64.768	1.0047	64.768	64.503	65.507	0					52	24	3	0	0	0	0.33245	1	5905	5905		101.21	7.2051	1	2227900	+		65204	16778	53735	53787	71814	71814					-0.013351093448136453
YPVQQDQL	8	Unmodified	_YPVQQDQL_					0	0	0			REV__nc|ENSG00000064886|Q15782-6|CHI3L2	REV__nc|ENSG00000064886|Q15782-6|CHI3L2	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	495.748182	989.481811	-0.026261	-1.3019E-05	-0.11124	-5.5145E-05	-0.1375	-6.8164E-05	495.74802854480777	64.768	1.0047	64.768	64.503	65.507	0	0	0	NaN	101.21	52	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	2227900	+		65205	16778	53735	53787							-0.013351093448136453
YPVRIAITL	9	Unmodified	_YPVRIAITL_					0	0	0			REV__SHQ1|p.F38Lfs*12|1|0.03|ENSG00000144736|chr3:72848227-72848227|G/-|frameshift_variant	REV__SHQ1|p.F38Lfs*12|1|0.03|ENSG00000144736|chr3:72848227-72848227|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	523.3233032226562	2	523.32386	1044.63317	-0.37111	-0.00019421	0.11957	6.2576E-05	-0.25153	-0.00013163	523.3237349076933	132.36	1.5282	131.23	130.94	132.47	-1.1249					65	30	3	0	0	0	0.44568	1	10601	10601		47.657	3.5405	1	96476	+		65206	19931	53736	53788	71815	71815					0.1126349675369056
YPVRIAITL	9	Unmodified	_YPVRIAITL_					0	0	0			REV__SHQ1|p.F38Lfs*12|1|0.03|ENSG00000144736|chr3:72848227-72848227|G/-|frameshift_variant	REV__SHQ1|p.F38Lfs*12|1|0.03|ENSG00000144736|chr3:72848227-72848227|G/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	523.3223876953125	2	523.32386	1044.63317	3.2837	0.0017184	-3.9487	-0.0020664	-0.66495	-0.00034798	523.3216227934925	132.7	1.7146	131.2	130.95	132.66	-1.5015					74	34	3	0	0	0	0.42676	1	12807	12807		49.442	5.3247	1	157630	+		65207	19931	53736	53788	71816	71816					0.1126349675369056
YPVTELFE	8	Unmodified	_YPVTELFE_					0	0	0		MYOM2|p.G446E|1|0.26|ENSG00000036448|chr8:2078808-2078808|G/A|missense_variant	MYOM2|p.G446E|1|0.26|ENSG00000036448|chr8:2078808-2078808|G/A|missense_variant	MYOM2|p.G446E|1|0.26|ENSG00000036448|chr8:2078808-2078808|G/A|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	499.2500915527344	2	499.247483	996.480414	2.5854	0.0012908	0.51684	0.00025803	3.1023	0.0015488	499.2476519601827	107.71	1.5335	107.71	107.4	108.93	0					97	35	4	0	0	0	0.56113	1	12139	12139		71.378	4.9486	1	12966000			65208	14853	53737	53789	71817	71817					-0.017967434335673715
YPVTELFE	8	Unmodified	_YPVTELFE_					0	0	0		MYOM2|p.G446E|1|0.26|ENSG00000036448|chr8:2078808-2078808|G/A|missense_variant	MYOM2|p.G446E|1|0.26|ENSG00000036448|chr8:2078808-2078808|G/A|missense_variant	MYOM2|p.G446E|1|0.26|ENSG00000036448|chr8:2078808-2078808|G/A|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	499.24884033203125	2	499.247483	996.480414	2.0486	0.0010228	1.567	0.0007823	3.6156	0.0018051	499.24810602999514	120.28	3.1366	120.28	120	123.14	0					173	70	4	0	0	0	0.49583	1	13880	13880		77.944	3.4272	1	6606300			65209	14853	53737	53789	71818	71818					-0.017967434335673715
YPVTELFE	8	Unmodified	_YPVTELFE_					0	0	0		MYOM2|p.G446E|1|0.26|ENSG00000036448|chr8:2078808-2078808|G/A|missense_variant	MYOM2|p.G446E|1|0.26|ENSG00000036448|chr8:2078808-2078808|G/A|missense_variant	MYOM2|p.G446E|1|0.26|ENSG00000036448|chr8:2078808-2078808|G/A|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	499.2491455078125	2	499.247483	996.480414	0.95387	0.00047622	1.9368	0.00096692	2.8906	0.0014431	499.24831202573387	155.81	2.9765	155.81	154.72	157.7	0					141	58	3	0	0	0	0.64377	1	18364	18364		54.765	1.4132	1	309150			65210	14853	53737	53789	71819	71819					-0.017967434335673715
YPVWCILF	8	Unmodified	_YPVWCILF_					0	0	0			REV__ENSG00000163914|ENST00000296271|RHO	REV__ENSG00000163914|ENST00000296271|RHO	MULTI-SECPEP	OvCa99_classI_Rep5	1	521.2975463867188	2	520.767332	1039.52011	1.5453	0.00080476	3.5724	0.0018604	5.1177	0.0026651	521.2710628923066	137.67	0.56592	137.67	137.26	137.82	0					27	11	4	0	0	0	0.028476	1	16061	16061		43.626	0	1	65175	+		65211	20912	53738	53790	71820	71820					0.001931050361463349
YPWKLLIL	8	Unmodified	_YPWKLLIL_					0	0	0			REV__L1MA6_dup4553|chr14:32965001-32966588:+|1.0811544242595916|0.0860524180403581|3.65|423.0|49|3|sense	REV__L1MA6_dup4553|chr14:32965001-32966588:+|1.0811544242595916|0.0860524180403581|3.65|423.0|49|3|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	523.3251953125	2	523.325871	1044.63719	1.6357	0.00085603	-3.085	-0.0016145	-1.4493	-0.00075845	523.3241054255567	117.8	0.88317	117.8	117.51	118.39	0					38	18	3	0	0	0	0.56113	1	13490	13490		71.378	2.8932	1	696940	+		65212	28400	53739	53791	71821	71821					0.1166558624740901
YPWLAIFF	8	Unmodified	_YPWLAIFF_					0	0	0		L1PB4_dup1466|chr4:19614553-19617282:+|1.566952962030771|0.0066926762288261|7.87|427.0|151|3|anti-sense	L1PB4_dup1466|chr4:19614553-19617282:+|1.566952962030771|0.0066926762288261|7.87|427.0|151|3|anti-sense	L1PB4_dup1466|chr4:19614553-19617282:+|1.566952962030771|0.0066926762288261|7.87|427.0|151|3|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	528.810791015625	2	528.781296	1055.54804	1.6176	0.00085536	-2.15	-0.0011369	-0.53239	-0.00028152	528.7799172379342	127.82	0.46336	127.82	127.67	128.14	0					13	9	2	0	0	0	0.028476	1	14788	14788		54.895	29.444	1	31657			65213	14788	53740	53792	71822	71822					0.022487512878797133
YPWNKELYLIR	11	Unmodified	_YPWNKELYLIR_					0	0	0		nc|ENSG00000185973|Q9NVH6-4|TMLHE;nc|ENSG00000185973|Q9NVH6-7|TMLHE;nc|ENSG00000185973|Q9NVH6-6|TMLHE;nc|ENSG00000185973|Q9NVH6-2|TMLHE;nc|ENSG00000185973|Q9NVH6-5|TMLHE;nc|ENSG00000185973|Q9NVH6-3|TMLHE;ENSG00000185973|ENST00000334398|TMLHE;nc|ENSG00000185973|Q9NVH6-8|TMLHE	nc|ENSG00000185973|Q9NVH6-4|TMLHE	nc|ENSG00000185973|Q9NVH6-4|TMLHE	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.9445495605469	3	498.941638	1493.80309	-1.0023	-0.00050008	4.232	0.0021115	3.2298	0.0016115	498.9437780016878	81.177	4.5443	78.467	78.101	82.645	-2.7106					241	93	6	0	0	0	0.70848	1	6655	6655		26.75	2.4738	1	6586900			65214	8306	53741	53793	71823	71823					0.07593567965477632
YPYAFILISH	10	Unmodified	_YPYAFILISH_					0	0	0		tr|A0A553SMZ7|A0A553SMZ7_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_23490PE=4SV=1	tr|A0A553SMZ7|A0A553SMZ7_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_23490PE=4SV=1	tr|A0A553SMZ7|A0A553SMZ7_NIACIABCtransporterATP-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_23490PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	612.2944946289062	2	612.326599	1222.63865	0.71576	0.00043828	-0.13362	-8.1821E-05	0.58214	0.00035646	612.3278559202571	141.04	0.40289	141.04	140.78	141.18	0					12	7	3	0	0	0	0.027048	1	16478	16478		33.516	18.651	1	17889			65215	33889	53742	53794	71824	71824					0.036231755455446546
YPYIAVLMDA	10	Unmodified	_YPYIAVLMDA_					0	0	0			REV__ENSG00000102195|ENST00000218316|GPR50	REV__ENSG00000102195|ENST00000218316|GPR50	MULTI-MSMS	OvCa9_classI_Rep2	2	578.2893676757812	2	578.291368	1154.56818	-5.4888	-0.0031741	2.5815	0.0014929	-2.9073	-0.0016812	578.2927598597663	159.22	4.1126	158.99	158.53	162.64	-0.22697					262	82	5	0	0	0	0.49049	1	16225	16225		55.504	2.1528	1	1073400	+		65216	17543	53743	53795	71825	71825					-0.0029186583442424308
YPYKAIPTLP	10	Unmodified	_YPYKAIPTLP_					0	0	0		tr|A0A553SSG2|A0A553SSG2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03090PE=4SV=1	tr|A0A553SSG2|A0A553SSG2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03090PE=4SV=1	tr|A0A553SSG2|A0A553SSG2_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_03090PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep3	3	580.85986328125	2	581.828975	1161.6434	-1.2938	-0.00075278	-3.3335	-0.0019395	-4.6273	-0.0026923	581.8275675928157	109.6	1.3105	108.46	107.62	108.93	-1.1444					41	24	3	0	0	0	0.026606	1	7826	7826		52.937	10.541	1	19392			65217	34373	53744	53796	71826	71826					0.0690405968828145
YPYTERRWHRW	11	Unmodified	_YPYTERRWHRW_					0	0	0			REV__nc|ENSG00000168907|Q68DD2-3|PLA2G4F	REV__nc|ENSG00000168907|Q68DD2-3|PLA2G4F	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.318359375	3	550.607652	1648.80113	-1.045	-0.0005754	-2.8001	-0.0015418	-3.8452	-0.0021172	550.6062332337829	49.921	0.17487	49.921	49.813	49.988	0					5	3	2	0	0	0	0.026478	1	3766	3766		3.6191	0	1	100660	+		65218	21415	53745	53797	71827	71827					0.0026795200021751953
YPYYNNIL	8	Unmodified	_YPYYNNIL_					0	0	0			REV__nc|ENSG00000182218|Q96JK4-2|HHIPL1	REV__nc|ENSG00000182218|Q96JK4-2|HHIPL1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	530.2838134765625	2	530.260925	1058.5073	-1.9882	-0.0010542	1.4728	0.00078096	-0.51537	-0.00027328	530.2615201210606	88.794	0.8907	86.191	85.882	86.773	-2.6027					37	17	3	0	0	0	0.028476	1	7576	7576		20.482	4.0087	1	95968	+		65219	22271	53746	53798	71828	71828					-0.019616348223962632
YPYYNNIL	8	Unmodified	_YPYYNNIL_					0	0	0			REV__nc|ENSG00000182218|Q96JK4-2|HHIPL1	REV__nc|ENSG00000182218|Q96JK4-2|HHIPL1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	530.260925	1058.5073	0.78083	0.00041404	-1.8326	-0.00097176	-1.0518	-0.00055771	530.2598427669272	87.789	0.98404	86.358	85.791	86.775	-1.4311	0.08411	-0.0014851	NaN	26.796	31	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51286	+		65220	22271	53746	53798							-0.019616348223962632
YPYYNNIL	8	Unmodified	_YPYYNNIL_					0	0	0			REV__nc|ENSG00000182218|Q96JK4-2|HHIPL1	REV__nc|ENSG00000182218|Q96JK4-2|HHIPL1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	530.260925	1058.5073	-0.45368	-0.00024057	-0.1306	-6.9252E-05	-0.58428	-0.00030982	530.260789501305	88.334	0.84412	86.203	85.906	86.75	-2.1309	-0.070492	0.00031992	NaN	26.796	31	16	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	112210	+		65221	22271	53746	53798							-0.019616348223962632
YQDITLSIR	9	Unmodified	_YQDITLSIR_					0	0	0		nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5;nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5;nc|ENSG00000100462|O14744-4|PRMT5	nc|ENSG00000100462|O14744-3|PRMT5	nc|ENSG00000100462|O14744-3|PRMT5	MULTI-SECPEP	OvCa9_classI_Rep4_	4	554.3314208984375	2	554.803488	1107.59242	-0.16081	-8.922E-05	4.3327	0.0024038	4.1719	0.0023146	554.8058192967782	91.543	1.3199	89.001	88.553	89.873	-2.5425					44	25	3	0	0	0	0.027462	1	8018	8018		32.812	19.853	1	74593			65222	2072	53747	53799	71829	71829					0.0429311064342528
YQDITLSIR	9	Unmodified	_YQDITLSIR_					0	0	0		nc|ENSG00000100462|O14744-3|PRMT5;nc|ENSG00000100462|O14744-5|PRMT5;nc|ENSG00000100462|O14744-2|PRMT5;ENSG00000100462|ENST00000324366|PRMT5;nc|ENSG00000100462|O14744-4|PRMT5	nc|ENSG00000100462|O14744-3|PRMT5	nc|ENSG00000100462|O14744-3|PRMT5	MULTI-MATCH	OvCa9_classI_Rep3	3		2	554.803488	1107.59242	-1.189	-0.00065969	5.6473	0.0031331	4.4582	0.0024734	554.8062673042235	90.985	1.3703	88.911	88.368	89.739	-2.0736	-0.04476	0.0009692	NaN	25.574	51	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	98420			65223	2072	53747	53799							0.0429311064342528
YQEEAVQLDN	10	Unmodified	_YQEEAVQLDN_					0	0	0			REV__nc|ENSG00000090615|Q08378-4|GOLGA3	REV__nc|ENSG00000090615|Q08378-4|GOLGA3	MULTI-MSMS	OvCa99_classI_Rep5	1	604.7758178710938	2	604.775125	1207.5357	-0.80603	-0.00048747	1.4904	0.00090135	0.68436	0.00041388	604.7758851167284	27.666	0.45	27.666	27.491	27.941	0					18	8	3	0	0	0	0.67729	1	842	842		28.081	0	1	238200	+		65224	17227	53748	53800	71830	71830					-0.05976981703747697
YQFTGIKKY	9	Unmodified	_YQFTGIKKY_					0	0	0		ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	ENSG00000173915|ENST00000369815|ATP5MK	MULTI-MSMS	OvCa99_classI_Rep5	1	574.3124389648438	2	574.310949	1146.60735	-0.8994	-0.00051654	0.256	0.00014702	-0.6434	-0.00036951	574.3109321310998	65.502	1.3798	65.502	65.072	66.452	0					81	34	5	0	0	0	0.014622	2	6028	6001;6028		154.12	57.928	1	10971000			65225	7426	53749	53801	71831;71832	71832					0.03990602511430552
YQGQHPVIQT	10	Unmodified	_YQGQHPVIQT_					0	0	0			REV__ENSG00000180730|ENST00000319420|SHISA2	REV__ENSG00000180730|ENST00000319420|SHISA2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	585.70751953125	2	585.798737	1169.58292	-1.5182	-0.00088933	3.5916	0.0021039	2.0734	0.0012146	585.8008322122133	55.328	0.61202	52.034	51.648	52.26	-3.2944					18	11	2	0	0	0	0.026931	1	3439	3439		23.523	9.3856	1	115640	+		65226	22188	53750	53802	71833	71833					0.004913423578727816
YQHHQFQVI	9	Unmodified	_YQHHQFQVI_					0	0	0		tr|A0A553SKL2|A0A553SKL2_NIACIGlycine--tRNAligasealphasubunitOS=NialliacirculansOX=1397GN=glyQPE=3SV=1	tr|A0A553SKL2|A0A553SKL2_NIACIGlycine--tRNAligasealphasubunitOS=NialliacirculansOX=1397GN=glyQPE=3SV=1	tr|A0A553SKL2|A0A553SKL2_NIACIGlycine--tRNAligasealphasubunitOS=NialliacirculansOX=1397GN=glyQPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.1987609863281	3	400.536724	1198.58834	1.4013	0.00056128	3.9412	0.0015786	5.3425	0.0021399	400.53780461551764	56.831	0.38008	56.831	56.581	56.961	0					12	8	2	0	0	0	0.027462	1	4712	4712		24.519	19.377	1	75307			65227	33628	53751	53803	71834	71834					-0.003009340596236143
YQHKLAEKL	9	Unmodified	_YQHKLAEKL_					0	0	0		ENSG00000123338|ENST00000293373|NCKAP1L;ENST00000547500.1_1_12:54891564-54894436:+|nuORF	ENSG00000123338|ENST00000293373|NCKAP1L	ENSG00000123338|ENST00000293373|NCKAP1L	MULTI-MSMS	OvCa99_classI_Rep5	1	565.3222045898438	2	565.321848	1128.62914	-0.14009	-7.9197E-05	0.52707	0.00029797	0.38698	0.00021877	565.3221212815278	39.238	0.52928	39.238	39.017	39.547	0					28	11	3	0	0	0	0.38969	1	2291	2291		52.937	6.4799	1	466920			65228	3588	53752	53804	71835	71835					0.06997407259973443
YQKAFEHL	8	Unmodified	_YQKAFEHL_					0	0	0		ENSG00000140463|ENST00000268057|BBS4;nc|ENSG00000140463|Q96RK4-2|BBS4;nc|ENSG00000140463|Q96RK4-3|BBS4	ENSG00000140463|ENST00000268057|BBS4	ENSG00000140463|ENST00000268057|BBS4	MULTI-MSMS	OvCa99_classI_Rep5	1	518.2667236328125	2	518.266542	1034.51853	0.39401	0.0002042	-0.24259	-0.00012573	0.15142	7.8476E-05	518.2661860248293	67.06	1.0229	67.06	66.739	67.762	0					52	25	4	0	0	0	0.61436	1	6248	6248		60.972	15.02	1	2613100			65229	4842	53753	53805	71836	71836					0.002651872717478909
YQKIGKAL	8	Unmodified	_YQKIGKAL_					0	0	0		ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	ENSG00000130340|ENST00000392185|SNX9	MULTI-MSMS	OvCa99_classI_Rep5	1	460.7818298339844	2	460.781828	919.549102	-0.44228	-0.00020379	0.54044	0.00024902	0.098159	4.523E-05	460.78190617350907	43.334	0.76603	43.334	43.1	43.866	0					37	17	3	0	0	0	0.50674	1	2849	2849		76.847	0	1	1421300			65230	3980	53754	53806	71837	71837					0.0861096565678281
YQKMAKLA	8	Unmodified	_YQKMAKLA_					0	0	0			REV__ENST00000512673.1_1_17:79846815-79848630:-|nuORF	REV__ENST00000512673.1_1_17:79846815-79848630:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	476.7669982910156	2	476.767863	951.521173	2.4137	0.0011508	-3.5062	-0.0016717	-1.0925	-0.00052087	476.76596905892586	84.124	0.66969	84.124	83.88	84.55	0					37	15	3	0	0	0	0.47599	1	8785	8785		79.939	0.48821	1	1118300	+		65231	22376	53755	53807	71838	71838					0.04347319405064809
YQKSTELLI	9	Unmodified	_YQKSTELLI_					0	0	0		ENST00000586518.1_1_17:73774674-73775034:-|nuORF;ENST00000401004.2_1:120904811-120905087:+|nuORF;ENSG00000197409|ENST00000356476|H3C4;ENSG00000274750|ENST00000614911|H3C6;ENSG00000278828|ENST00000685041|H3C10;ENSG00000277775|ENST00000618052|H3C7;ENSG00000275714|ENST00000613854|H3C1;ENSG00000275379|ENST00000616365|H3C11;ENSG00000273983|ENST00000614378|H3C8;ENSG00000203852|ENST00000403683|H3C15;ENSG00000197153|ENST00000359303|H3C12;ENSG00000183598|ENST00000331491|H3C13;ENSG00000168148|ENST00000366696|H3-4;ENSG00000163041|ENST00000366815|H3-3A;ENSG00000132475|ENST00000254810|H3-3B;ENSG00000203811|ENST00000369158|H3C14;nc|ENSG00000273213|Q5TEC6|H3-7;ENSG00000188375|ENST00000340398|H3-5	ENST00000586518.1_1_17:73774674-73775034:-|nuORF	ENST00000586518.1_1_17:73774674-73775034:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	547.8095092773438	2	547.808239	1093.60193	1.9612	0.0010744	0.19942	0.00010924	2.1607	0.0011836	547.8082391440778	85.728	0.84846	85.728	85.422	86.271	0					62	20	4	0	0	0	0.075543	1	9000	9000		104.06	7.8664	1	17426000			65232	14046	53756	53808	71839	71839					0.058868789289590495
YQKVVAGVAN	10	Unmodified	_YQKVVAGVAN_					0	0	0		ENSG00000244734|ENST00000335295|HBB;ENSG00000223609|ENST00000650601|HBD	ENSG00000244734|ENST00000335295|HBB	ENSG00000244734|ENST00000335295|HBB	MULTI-MSMS	OvCa99_classI_Rep5	1	524.7939453125	2	524.792924	1047.57129	-0.56597	-0.00029702	0.28943	0.00015189	-0.27653	-0.00014512	524.7929808988748	52.37	0.70098	52.37	52.127	52.828	0					34	15	4	0	0	0	0.3094	1	4106	4106		79.713	24.936	1	1049000		+	65233	9402	53757	53809	71840	71840					0.049411453345555856
YQLAVTKV	8	Unmodified	_YQLAVTKV_					0	0	0		nc|ENSG00000077935|Q8NDV3-2|SMC1B;ENSG00000077935|ENST00000357450|SMC1B	nc|ENSG00000077935|Q8NDV3-2|SMC1B	nc|ENSG00000077935|Q8NDV3-2|SMC1B	MULTI-MSMS	OvCa99_classI_Rep5	1	461.2754821777344	2	461.273835	920.533118	2.5286	0.0011664	-0.12122	-5.5917E-05	2.4073	0.0011104	461.27371068370894	75.854	1.1188	75.854	75.639	76.757	0					80	27	5	0	0	0	0.16223	2	7558	7558;7588		131.03	0	1	11141000			65234	1579	53758	53810	71841;71842	71841					0.06967259419900529
YQLELRTTL	9	Unmodified	_YQLELRTTL_					0	0	0		nc|ENSG00000179344|P01920|HLA-DQB1	nc|ENSG00000179344|P01920|HLA-DQB1	nc|ENSG00000179344|P01920|HLA-DQB1	MULTI-MSMS	OvCa99_classI_Rep5	1	568.8216552734375	2	568.819138	1135.62372	2.3752	0.0013511	0.067573	3.8437E-05	2.4428	0.0013895	568.8191002065855	102.81	0.96645	102.81	102.5	103.47	0					62	22	4	0	0	0	0.093198	2	11459	11459;11483		99.013	35.479	1	7201200			65235	15199	53759	53811	71843;71844	71843					0.06133683677512636
YQLLRDLLF	9	Unmodified	_YQLLRDLLF_					0	0	0			REV__ENST00000563040.5_1_16:30007580-30010601:+|nuORF	REV__ENST00000563040.5_1_16:30007580-30010601:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	590.8455200195312	2	590.839874	1179.66519	1.4195	0.00083872	-0.42247	-0.00024961	0.99707	0.00058911	590.8395219339804	149.54	0.34171	149.54	149.26	149.6	0					21	6	4	0	0	0	0.28934	1	17504	17504		64.207	5.4253	1	550070	+		65236	21471	53760	53812	71845	71845					0.082548644368444
YQNHVQHL	8	Unmodified	_YQNHVQHL_					0	0	0		ENSG00000100852|ENST00000345122|ARHGAP5;nc|ENSG00000100852|Q13017-2|ARHGAP5	ENSG00000100852|ENST00000345122|ARHGAP5	ENSG00000100852|ENST00000345122|ARHGAP5	MULTI-MSMS	OvCa99_classI_Rep5	1	519.7608032226562	2	519.759415	1037.50428	-0.66301	-0.00034461	0.51348	0.00026689	-0.14953	-7.7718E-05	519.7595459225803	40.965	0.61961	40.965	40.711	41.33	0					43	13	4	0	0	0	0.47599	2	2519	2519;2544		79.939	16.633	1	1295100			65237	2112	53761	53813	71846;71847	71846					-0.01297465156517319
YQQILPLR	8	Unmodified	_YQQILPLR_					0	0	0			REV__tr|A0A7D6ZSR5|A0A7D6ZSR5_9CLOTATP-dependentDNAhelicaseRecGC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16915PE=4SV=1	REV__tr|A0A7D6ZSR5|A0A7D6ZSR5_9CLOTATP-dependentDNAhelicaseRecGC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16915PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	515.8043823242188	2	515.805834	1029.59712	-0.17166	-8.8541E-05	0.15324	7.904E-05	-0.018421	-9.5016E-06	515.8057522410776	136.15	1.0273	135.92	135.57	136.6	-0.22696					51	20	4	0	0	0	0.73626	1	13543	13543		33.516	5.6333	1	147900	+		65238	32191	53762	53814	71848	71848					0.08350039576839663
YQQNLGNEPD	10	Unmodified	_YQQNLGNEPD_					0	0	0		ENST00000512755.1_1_13:33101488-33110480:-|nuORF;ENSG00000244754|ENST00000267068|N4BP2L2;nc|ENSG00000244754|Q92802-2|N4BP2L2	ENST00000512755.1_1_13:33101488-33110480:-|nuORF	ENST00000512755.1_1_13:33101488-33110480:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	588.2822875976562	2	589.259642	1176.50473	1.3761	0.00081085	3.9744	0.0023419	5.3504	0.0031528	589.2618550457611	93.554	0.74789	93.554	93.346	94.094	0					35	17	3	0	0	0	0.026681	1	10229	10229		36.447	18.979	1	2063200			65239	9403	53763	53815	71849	71849					-0.07646135017989764
YQQNLGNEPD	10	Unmodified	_YQQNLGNEPD_					0	0	0		ENST00000512755.1_1_13:33101488-33110480:-|nuORF;ENSG00000244754|ENST00000267068|N4BP2L2;nc|ENSG00000244754|Q92802-2|N4BP2L2	ENST00000512755.1_1_13:33101488-33110480:-|nuORF	ENST00000512755.1_1_13:33101488-33110480:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	589.259642	1176.50473	-0.71694	-0.00042246	3.532	0.0020813	2.8151	0.0016588	589.2616470083368	94.864	0.68719	93.764	93.411	94.098	-1.0995	0.072498	-0.00031042	NaN	36.447	25	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	21549			65240	9403	53763	53815							-0.07646135017989764
YQQNLGNEPD	10	Unmodified	_YQQNLGNEPD_					0	0	0		ENST00000512755.1_1_13:33101488-33110480:-|nuORF;ENSG00000244754|ENST00000267068|N4BP2L2;nc|ENSG00000244754|Q92802-2|N4BP2L2	ENST00000512755.1_1_13:33101488-33110480:-|nuORF	ENST00000512755.1_1_13:33101488-33110480:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	589.259642	1176.50473	-1.8983	-0.0011186	4.4936	0.0026479	2.5953	0.0015293	589.2623652703978	95.559	0.9399	93.697	93.498	94.438	-1.8619	0.0054629	0.00082282	NaN	36.447	33	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	31615			65241	9403	53763	53815							-0.07646135017989764
YQQNLGNEPD	10	Unmodified	_YQQNLGNEPD_					0	0	0		ENST00000512755.1_1_13:33101488-33110480:-|nuORF;ENSG00000244754|ENST00000267068|N4BP2L2;nc|ENSG00000244754|Q92802-2|N4BP2L2	ENST00000512755.1_1_13:33101488-33110480:-|nuORF	ENST00000512755.1_1_13:33101488-33110480:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	589.259642	1176.50473	-0.30388	-0.00017907	2.9535	0.0017404	2.6496	0.0015613	589.2611555721177	96.177	0.71212	93.752	93.508	94.22	-2.4256	0.059927	-0.00099222	NaN	36.447	21	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36485			65242	9403	53763	53815							-0.07646135017989764
YQRALFLSC	9	Unmodified	_YQRALFLSC_					0	0	0		ENST00000473145.5_1_3:52448512-52448653:+|nuORF	ENST00000473145.5_1_3:52448512-52448653:+|nuORF	ENST00000473145.5_1_3:52448512-52448653:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	550.7826538085938	2	550.781502	1099.54845	1.3458	0.00074124	2.0897	0.001151	3.4355	0.0018922	550.7825579804899	42.558	0.98736	39.848	39.621	40.608	-2.7097					51	19	3	0	0	0	0.61208	1	2302	2302		30.504	1.3541	1	269590			65243	12405	53764	53816	71850	71850					0.0026580294545510696
YQRHYYYYRNK	11	Unmodified	_YQRHYYYYRNK_					0	0	0			REV__ENST00000565031.1_1_16:2009625-2011290:+|nuORF	REV__ENST00000565031.1_1_16:2009625-2011290:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	552.29931640625	3	551.935546	1652.78481	-1.0586	-0.00058427	0.77556	0.00042806	-0.28302	-0.00015621	551.9371500493291	27.141	0.2483	27.141	27.043	27.291	0					6	4	2	0	0	0	0.026505	1	772	772		3.026	0	1	7351.4	+		65244	19711	53765	53817	71851	71851					-0.015471739565555254
YQRKEPVI	8	Unmodified	_YQRKEPVI_					0	0	0		nc|ENSG00000089041|Q99572-5|P2RX7;nc|ENSG00000089041|Q99572-2|P2RX7;ENSG00000089041|ENST00000328963|P2RX7;nc|ENSG00000089041|Q99572-3|P2RX7;ENST00000539695.5_1_12:121570737-121600081:+|nuORF;P2RX7|p.V312Afs*7|1|0.1|ENSG00000089041|chr12:121175440-121175441|-/C|frameshift_variant	nc|ENSG00000089041|Q99572-5|P2RX7	nc|ENSG00000089041|Q99572-5|P2RX7	MULTI-MSMS	OvCa99_classI_Rep5	1	516.7957763671875	2	516.795466	1031.57638	-0.44672	-0.00023086	0.019189	9.917E-06	-0.42753	-0.00022095	516.7954125845826	42.988	0.85339	42.988	42.539	43.393	0					25	15	2	0	0	0	0.66057	1	2802	2802		51.335	0	1	2644700			65245	1804	53766	53818	71852	71852					0.06185449197187154
YQRVVKKIYA	10	Unmodified	_YQRVVKKIYA_					0	0	0			REV__chr1:154224627-154225084|276|34.89|0.39|6.48|+|0|None,UBAP2L|1	REV__chr1:154224627-154225084|276|34.89|0.39|6.48|+|0|None,UBAP2L|1	MULTI-MSMS	OvCa9_classI_Rep2	2	634.3787231445312	2	634.379697	1266.74484	-5.7659	-0.0036578	3.1969	0.0020281	-2.569	-0.0016297	634.3814892688545	163.56	1.4089	163.33	162.75	164.16	-0.22696					114	47	3	0	0	0	0.82648	1	16695	16695		15.642	0.77694	1	320930	+		65246	15801	53767	53819	71853	71853					0.12213931110863996
YQRYREERFRL	11	Unmodified	_YQRYREERFRL_					0	0	0		nc|ENSG00000158604|Q7Z7H5-2|TMED4;ENSG00000158604|ENST00000457408|TMED4	nc|ENSG00000158604|Q7Z7H5-2|TMED4	nc|ENSG00000158604|Q7Z7H5-2|TMED4	MULTI-MSMS	OvCa99_classI_Rep5	1	539.2587280273438	3	539.286579	1614.83791	0.16183	8.7274E-05	1.9263	0.0010388	2.0882	0.0011261	539.28768256054	20.917	0.28508	20.917	20.776	21.061	0					7	5	2	0	0	0	0.72575	1	61	61		5.6988	4.28	1	20886			65247	5963	53768	53820	71854	71854					0.05508203826116187
YQTKIKTK	8	Unmodified	_YQTKIKTK_					0	0	0		Harlequin-int_dup157|chr4:69051711-69052349:+|1.0121776539514982|0.0619131635885363|4.03|410.0|36|2|anti-sense	Harlequin-int_dup157|chr4:69051711-69052349:+|1.0121776539514982|0.0619131635885363|4.03|410.0|36|2|anti-sense	Harlequin-int_dup157|chr4:69051711-69052349:+|1.0121776539514982|0.0619131635885363|4.03|410.0|36|2|anti-sense	MULTI-SECPEP	OvCa99_classI_Rep5	1	505.77044677734375	2	505.305667	1008.59678	1.3445	0.0006794	-0.14831	-7.494E-05	1.1962	0.00060446	505.30595177888966	81.114	1.7429	81.114	79.87	81.613	0					52	41	2	0	0	0	0.028476	1	8371	8371		49.442	29.445	1	766110			65248	14357	53769	53821	71855	71855					0.09282619856981
YQTPRLWLF	9	Unmodified	_YQTPRLWLF_					0	0	0		nc|ENSG00000144848|Q9NT62-2|ATG3;ENSG00000144848|ENST00000283290|ATG3;ENST00000495756.5_1_3:112255248-112280627:-|nuORF;ENST00000467275.1_1_3:112256557-112257010:-|nuORF	nc|ENSG00000144848|Q9NT62-2|ATG3	nc|ENSG00000144848|Q9NT62-2|ATG3	MULTI-MSMS	OvCa99_classI_Rep5	1	612.3329467773438	2	612.332216	1222.64988	2.243	0.0013734	-0.41284	-0.00025279	1.8301	0.0011207	612.3319065658613	136.85	1.059	136.85	136.58	137.64	0					40	21	2	0	0	0	0.049969	2	15959	15959;15984		118.74	47.447	1	1639000			65249	5187	53770	53822	71856;71857	71856					0.0474599763963397
YQTQLIQRV	9	Unmodified	_YQTQLIQRV_					0	0	0		DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;ENSG00000197102|ENST00000360184|DYNC1H1;DYNC1H1|p.F3496Wfs*92|1|0.14|ENSG00000197102|chr14:102034043-102034044|-/GACCTGGCAGCTGTCGAGGC|frameshift_variant;DYNC1H1|p.P2596Tfs*19|1|0.06|ENSG00000197102|chr14:102016936-102016937|-/A|frameshift_variant;DYNC1H1|p.E1316*|1|0.12|ENSG00000197102|chr14:102000128-102000129|-/C|frameshift_variant;DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant;DYNC1H1|p.V1545Afs*34|1|0.16|ENSG00000197102|chr14:102002628-102002628|T/-|frameshift_variant	DYNC1H1|p.Q4566Kfs*22|1|0.28|ENSG00000197102|chr14:102050080-102050080|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	574.825927734375	2	574.824755	1147.63496	1.727	0.00099271	0.20696	0.00011897	1.9339	0.0011117	574.824825549954	77.567	0.71661	77.567	77.336	78.053	0					38	16	3	0	0	0	0.27001	1	7823	7823		66.429	0.96389	1	1505900			65250	767;768	53771	53823	71858	71858					0.06704505771654112
YQVIAQART	9	Unmodified	_YQVIAQART_					0	0	0			REV__tr|A0A553SFK9|A0A553SFK9_NIACIOligopeptideABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09100PE=4SV=1	REV__tr|A0A553SFK9|A0A553SFK9_NIACIOligopeptideABCtransportersubstrate-bindingproteinOS=NialliacirculansOX=1397GN=CEQ21_09100PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	525.2899169921875	2	525.290548	1048.56654	0.11111	5.8364E-05	-0.23899	-0.00012554	-0.12788	-6.7173E-05	525.290259651577	31.392	0.78902	28.682	28.494	29.283	-2.7097					29	15	3	0	0	0	0.59259	1	961	961		32.812	1.2826	1	76726	+		65251	29589	53772	53824	71859	71859					0.044202611917853574
YQYPVIIHL	9	Unmodified	_YQYPVIIHL_					0	0	0		ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	573.3200073242188	2	573.321317	1144.62808	0.76843	0.00044056	-1.12	-0.00064213	-0.35159	-0.00020157	573.3206068391985	121.73	1.0998	120.7	120.33	121.43	-1.0286					44	20	3	0	0	0	0.32337	1	9338	9338		60.294	19.721	1	104470			65252	1349	53773	53825	71860	71860					0.061551928911057985
YQYPVIIHL	9	Unmodified	_YQYPVIIHL_					0	0	0		ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	573.3206176757812	2	573.321317	1144.62808	-0.35058	-0.000201	0.17484	0.00010024	-0.17574	-0.00010076	573.3212756592784	122.04	1.0728	120.69	120.25	121.33	-1.3479					53	20	4	0	0	0	0.39645	3	11514	11506;11514;11530		52.299	18.784	1	108820			65253	1349	53773	53825	71861;71862;71863	71862					0.061551928911057985
YQYPVIIHL	9	Unmodified	_YQYPVIIHL_					0	0	0		ENST00000470968.6_1_1:43829589-43833598:-|nuORF;nc|ENSG00000066322|Q9BW60-2|ELOVL1;ENSG00000066322|ENST00000372458|ELOVL1	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	ENST00000470968.6_1_1:43829589-43833598:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	573.321317	1144.62808	-1.8589	-0.0010657	1.5236	0.00087349	-0.33533	-0.00019225	573.3221291205223	120.98	0.83868	120.78	120.41	121.25	-0.19718	0.05513	0.0016395	NaN	60.294	40	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	65828			65254	1349	53773	53825							0.061551928911057985
YRAELIQLQI	10	Unmodified	_YRAELIQLQI_					0	0	0			REV__nc|ENSG00000165929|Q8N9U0-2|TC2N	REV__nc|ENSG00000165929|Q8N9U0-2|TC2N	MULTI-MSMS	OvCa99_classI_Rep5	1	416.2449951171875	3	416.243317	1245.70812	1.0605	0.00044145	0.099509	4.142E-05	1.1601	0.00048287	416.24335289634735	72.461	2.2002	72.461	71.707	73.907	0					169	54	5	0	0	0	0.4826	1	7109	7109		56.632	8.0307	1	16175000	+		65255	21140	53774	53826	71864	71864					0.09509634494270358
YRAGKFLIL	9	Unmodified	_YRAGKFLIL_					0	0	0			REV__ENSG00000271447|ENST00000605424|MMP28	REV__ENSG00000271447|ENST00000605424|MMP28	MULTI-MSMS	OvCa9_classI_Rep4_	4	540.8314208984375	2	540.831852	1079.64915	-2.0025	-0.001083	1.179	0.00063766	-0.82347	-0.00044536	540.8325567076699	124.8	3.4681	123.41	123.02	126.49	-1.3908					189	68	4	0	0	0	0.67509	1	11929	11929		23.042	1.0826	1	9581200	+		65256	23609	53775	53827	71865	71865					0.11251202990615639
YRAQLEVKV	9	Unmodified	_YRAQLEVKV_					0	0	0		ENSG00000241839|ENST00000323544|PLEKHO2;nc|ENSG00000241839|Q8TD55-2|PLEKHO2	ENSG00000241839|ENST00000323544|PLEKHO2	ENSG00000241839|ENST00000323544|PLEKHO2	MULTI-MSMS	OvCa99_classI_Rep5	1	553.3236694335938	2	553.321848	1104.62914	-0.29697	-0.00016432	0.36065	0.00019956	0.063677	3.5234E-05	553.3219633862291	67.624	1.0577	67.624	67.298	68.356	0					73	26	4	0	0	0	0.10502	2	6352	6326;6352		95.815	20.772	1	9768100			65257	9356	53776	53828	71866;71867	71867					0.08101407260005544
YRASEQKL	8	Unmodified	_YRASEQKL_					0	0	0		ENSG00000092929|ENST00000207549|UNC13D;nc|ENSG00000092929|Q70J99-3|UNC13D;ENST00000590856.1_1_17:73826107-73826739:-|nuORF	ENSG00000092929|ENST00000207549|UNC13D	ENSG00000092929|ENST00000207549|UNC13D	MULTI-MSMS	OvCa99_classI_Rep5	1	497.76922607421875	2	497.769448	993.524344	-1.1487	-0.0005718	0.96907	0.00048237	-0.17965	-8.9424E-05	497.7697949532109	34.375	0.75006	34.375	34.161	34.911	0					25	15	3	0	0	0	0.50747	1	1658	1658		76.774	15.802	1	583840			65258	1903	53777	53829	71868	71868					0.027322857834292336
YRCQPSLAVH	10	Unmodified	_YRCQPSLAVH_					0	0	0		nc|ENSG00000215811|A8MVZ5|BTNL10P	nc|ENSG00000215811|A8MVZ5|BTNL10P	nc|ENSG00000215811|A8MVZ5|BTNL10P	MULTI-MSMS	OvCa9_classI_Rep2	2	587.2949829101562	2	587.295307	1172.57606	-1.7713	-0.0010403	1.3003	0.00076366	-0.47097	-0.0002766	587.2959419520926	118.58	1.9781	118.43	118.08	120.06	-0.14754					123	39	5	0	0	0	0.73378	1	11429	11429		26.693	2.4902	1	499840			65259	15318	53778	53830	71869	71869					-0.0033229379432668793
YRDIPELQGF	10	Unmodified	_YRDIPELQGF_					0	0	0		nc|ENSG00000081760|Q86V21-3|AACS;ENSG00000081760|ENST00000316519|AACS	nc|ENSG00000081760|Q86V21-3|AACS	nc|ENSG00000081760|Q86V21-3|AACS	MULTI-MSMS	OvCa99_classI_Rep5	1	619.3179321289062	2	619.31422	1236.61389	1.6837	0.0010427	0.10274	6.3628E-05	1.7864	0.0011064	619.314248135567	108.69	0.82788	108.69	108.41	109.24	0					30	18	2	0	0	0	0.38633	1	12296	12296		70.399	19.206	1	1977500			65260	1663	53779	53831	71870	71870					0.005044956721121707
YRELLHYRLGR	11	Unmodified	_YRELLHYRLGR_					0	0	0		ENSG00000154429|ENST00000284617|CCSAP;nc|ENSG00000154429|Q6IQ19-3|CCSAP;nc|ENSG00000154429|Q6IQ19-4|CCSAP;ENST00000483092.1_1_1:229463285-229478721:-|nuORF	ENSG00000154429|ENST00000284617|CCSAP	ENSG00000154429|ENST00000284617|CCSAP	MULTI-SECPEP	OvCa9_classI_Rep4_	4	492.7955627441406	3	492.612515	1474.81572	-0.39283	-0.00019351	2.217	0.0010921	1.8241	0.00089859	492.61343710043906	40.462	0.7842	37.508	37.213	37.997	-2.9541					21	14	2	0	0	0	0.026383	1	1709	1709		5.4129	0	1	37455			65261	5735	53780	53832	71871	71871					0.09730024148348093
YRELLHYRLGR	11	Unmodified	_YRELLHYRLGR_					0	0	0		ENSG00000154429|ENST00000284617|CCSAP;nc|ENSG00000154429|Q6IQ19-3|CCSAP;nc|ENSG00000154429|Q6IQ19-4|CCSAP;ENST00000483092.1_1_1:229463285-229478721:-|nuORF	ENSG00000154429|ENST00000284617|CCSAP	ENSG00000154429|ENST00000284617|CCSAP	MULTI-MATCH	OvCa9_classI_Rep2	2		3	492.612515	1474.81572	0.31603	0.00015568	2.1045	0.0010367	2.4205	0.0011924	492.61313851458107	40.065	0.79555	37.356	37.052	37.848	-2.7097	-0.076093	-7.9464E-05	NaN	8.7993	35	15	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	36785			65262	5735	53780	53832							0.09730024148348093
YRFGDSQQL	9	Unmodified	_YRFGDSQQL_					0	0	0		nc|ENSG00000127603|Q9UPN3|MACF1;nc|ENSG00000127603|Q9UPN3-4|MACF1;nc|ENSG00000127603|Q9UPN3-3|MACF1;nc|ENSG00000127603|Q9UPN3-2|MACF1;nc|ENSG00000127603|O94854|MACF1;ENST00000462496.5_1_1:39929295-39945768:+|nuORF	nc|ENSG00000127603|Q9UPN3|MACF1	nc|ENSG00000127603|Q9UPN3|MACF1	MULTI-MSMS	OvCa99_classI_Rep5	1	557.269287109375	2	557.269813	1112.52507	1.6567	0.00092324	-0.5917	-0.00032974	1.065	0.00059351	557.2693943682071	74.66	0.72314	74.66	74.405	75.128	0					44	17	4	0	0	0	0.14855	1	7394	7394		85.161	13.283	1	3861100			65263	15005	53781	53833	71872	71872					-0.026689195675317023
YRFKKRTEL	9	Unmodified	_YRFKKRTEL_					0	0	0		ENSG00000161016|ENST00000528957|RPL8;ENST00000531767.1_1_8:146017155-146017514:-|nuORF;ENST00000525232.5_1_8:146017155-146017514:-|nuORF	ENSG00000161016|ENST00000528957|RPL8	ENSG00000161016|ENST00000528957|RPL8	MULTI-MSMS	OvCa99_classI_Rep5	1	414.24383544921875	3	414.24354	1239.70879	-0.0045633	-1.8903E-06	-0.15688	-6.4986E-05	-0.16144	-6.6876E-05	414.2433950539527	36.374	0.90392	36.374	36.119	37.023	0					41	19	3	0	0	0	0.38969	1	1909	1909		52.937	11.51	1	1341900			65264	6116	53782	53834	71873	71873					0.09852473933983674
YRFVRRYLKYR	11	Unmodified	_YRFVRRYLKYR_					0	0	0		tr|A0A7D6VT79|A0A7D6VT79_9CLOTDNAtopologymodulationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16075PE=4SV=1	tr|A0A7D6VT79|A0A7D6VT79_9CLOTDNAtopologymodulationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16075PE=4SV=1	tr|A0A7D6VT79|A0A7D6VT79_9CLOTDNAtopologymodulationproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_16075PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	406.7178039550781	4	405.737489	1618.92085	1.1341	0.00046013	-3.5498	-0.0014403	-2.4157	-0.00098014	406.2374479091506	52.09	1.4114	48.882	48.239	49.651	-3.208					54	27	3	0	0	0	0.026538	1	3157	3157		3.026	1.6072	1	29205			65265	35095	53783	53835	71874	71874					0.13614565344778384
YRGERINQL	9	Unmodified	_YRGERINQL_					0	0	0		ENST00000397415.7_1_6:42848808-42854199:+|nuORF;ENSG00000146223|ENST00000493763|RPL7L1	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	ENST00000397415.7_1_6:42848808-42854199:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	574.8134765625	2	574.812179	1147.60981	-0.59301	-0.00034087	0.097769	5.6199E-05	-0.49524	-0.00028467	574.8120673921536	48.622	0.73876	48.622	48.292	49.031	0					45	16	4	0	0	0	0.10502	1	3577	3577		95.815	8.1187	1	1629400			65266	5274	53784	53836	71875	71875					0.041904509690766645
YRGIFPVL	8	Unmodified	_YRGIFPVL_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;ENSG00000067225|ENST00000335181|PKM;nc|ENSG00000067225|P14618-2|PKM;ENST00000565143.1_1_15:72491993-72493046:-|nuORF	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	MULTI-MSMS	OvCa9_classI_Rep2	2	482.78472900390625	2	482.78437	963.554188	-1.6052	-0.00077495	1.3983	0.00067509	-0.20683	-9.9855E-05	482.78488077781606	119.78	1.8256	119.61	119.25	121.08	-0.17138					103	36	4	0	0	0	0.7043	1	11524	11524		42.474	1.2661	1	403680			65267	1372	53785	53837	71876	71876					0.07095269519413705
YRGIFPVL	8	Unmodified	_YRGIFPVL_					0	0	0		nc|ENSG00000067225|P14618-3|PKM;ENSG00000067225|ENST00000335181|PKM;nc|ENSG00000067225|P14618-2|PKM;ENST00000565143.1_1_15:72491993-72493046:-|nuORF	nc|ENSG00000067225|P14618-3|PKM	nc|ENSG00000067225|P14618-3|PKM	MULTI-MSMS	OvCa9_classI_Rep3	3	482.7843322753906	2	482.78437	963.554188	1.1629	0.00056142	-1.4927	-0.00072066	-0.32985	-0.00015925	482.7834710585416	120.81	2.5422	119.78	119.46	122	-1.0271					114	48	4	0	0	0	0.68312	4	9259	9240;9246;9252;9259		46.766	9.738	1	731330			65268	1372	53785	53837	71877;71878;71879;71880	71880					0.07095269519413705
YRGLIKLY	8	Unmodified	_YRGLIKLY_					0	0	0		ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	ENSG00000062725|ENST00000083182|APPBP2	MULTI-MSMS	OvCa99_classI_Rep5	1	513.3128662109375	2	513.310752	1024.60695	1.3298	0.00068259	0.83611	0.00042918	2.1659	0.0011118	513.310806768626	81.632	0.84984	81.632	81.372	82.222	0					44	20	3	0	0	0	0.66704	1	8432	8432		50.025	16.509	1	863290			65269	1280	53786	53838	71881	71881					0.09563227582225409
YRHFKLVMK	9	Unmodified	_YRHFKLVMK_					0	0	0		nc|ENSG00000144736|Q6PI26-2|SHQ1;ENSG00000144736|ENST00000325599|SHQ1;ENST00000475558.5_1_3:72859059-72866479:-|nuORF	nc|ENSG00000144736|Q6PI26-2|SHQ1	nc|ENSG00000144736|Q6PI26-2|SHQ1	MULTI-MSMS	OvCa9_classI_Rep2	2	611.3508911132812	2	611.349886	1220.68522	0.023819	1.4562E-05	1.9565	0.0011961	1.9803	0.0012107	611.3510154511714	125.27	1.2863	125.03	124.66	125.95	-0.2359					68	25	4	0	0	0	0.56889	1	12197	12197		35.618	1.6967	1	393690			65270	5179	53787	53839	71882	71882					0.08370336895791297
YRIDYFRK	8	Unmodified	_YRIDYFRK_					0	0	0		tr|A0A553SSP1|A0A553SSP1_NIACIGlycosylhydrolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_03490PE=3SV=1	tr|A0A553SSP1|A0A553SSP1_NIACIGlycosylhydrolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_03490PE=3SV=1	tr|A0A553SSP1|A0A553SSP1_NIACIGlycosylhydrolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_03490PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	580.8155517578125	2	580.81419	1159.61383	-1.6851	-0.00097871	0.83709	0.0004862	-0.84798	-0.00049252	580.8146546108718	63.915	0.72676	63.915	63.607	64.334	0					56	17	5	0	0	0	0.37357	1	5800	5800		93.195	5.4412	1	8999900			65271	34397	53788	53840	71883	71883					0.04040540462779063
YRILILNL	8	Unmodified	_YRILILNL_					0	0	0			REV__ENSG00000139826|ENST00000375898|ABHD13	REV__ENSG00000139826|ENST00000375898|ABHD13	MULTI-MSMS	OvCa9_classI_Rep2	2	509.3254089355469	2	509.326402	1016.63825	0.60521	0.00030825	-0.056833	-2.8946E-05	0.54838	0.00027931	509.3263181489333	130.69	0.99487	130.46	130.26	131.25	-0.22696					30	19	2	0	0	0	0.66704	1	12864	12864		50.025	7.5501	1	46589	+		65272	19635	53789	53841	71884	71884					0.13059800616315442
YRILILNL	8	Unmodified	_YRILILNL_					0	0	0			REV__ENSG00000139826|ENST00000375898|ABHD13	REV__ENSG00000139826|ENST00000375898|ABHD13	MULTI-MATCH-MSMS	OvCa9_classI_Rep2	2		2	509.326402	1016.63825	0.60521	0.00030825	-0.056833	-2.8946E-05	0.54838	0.00027931	509.3263181489333	130.69	0.99487	130.46	130.26	131.25	-0.22696	0	0	NaN	50.025	30	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	46589	+		65273	19635	53789	53841							0.13059800616315442
YRISKYPTLK	10	Unmodified	_YRISKYPTLK_					0	0	0		ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	ENSG00000023318|ENST00000262455|ERP44	MULTI-SECPEP	OvCa9_classI_Rep2	2	634.3248901367188	2	634.871705	1267.72886	-1.7417	-0.0011058	0.92548	0.00058756	-0.81622	-0.00051819	634.8718746908048	100.31	0.94267	99.484	99.212	100.15	-0.83051					30	18	2	0	0	0	0.027028	1	9216	9216		39.253	2.8061	1	74774			65274	1038	53790	53842	71885	71885					0.10570224873913503
YRITYGETGGN	11	Unmodified	_YRITYGETGGN_					0	0	0		ENSG00000115414|ENST00000354785|FN1;nc|ENSG00000115414|P02751-5|FN1;nc|ENSG00000115414|P02751-7|FN1;nc|ENSG00000115414|P02751-11|FN1;nc|ENSG00000115414|P02751-1|FN1;nc|ENSG00000115414|P02751-3|FN1;nc|ENSG00000115414|P02751-17|FN1;nc|ENSG00000115414|P02751-8|FN1;nc|ENSG00000115414|P02751-13|FN1;nc|ENSG00000115414|P02751-14|FN1;nc|ENSG00000115414|P02751-9|FN1;nc|ENSG00000115414|P02751-10|FN1;nc|ENSG00000115414|P02751-6|FN1;nc|ENSG00000115414|P02751-4|FN1;FN1-SEC31A|2|fusion;FN1|p.E1684*|1|0.04|ENSG00000115414|chr2:215380922-215380923|-/A|frameshift_variant;FN1-SEC31A|1|fusion	ENSG00000115414|ENST00000354785|FN1	ENSG00000115414|ENST00000354785|FN1	MULTI-MSMS	OvCa99_classI_Rep5	1	615.7921752929688	2	615.791109	1229.56767	0.48942	0.00030138	-0.73354	-0.00045171	-0.24412	-0.00015033	615.7906001790211	63.453	0.71596	63.453	63.219	63.935	0					36	17	4	0	0	0	0.013892	1	5713	5713		158.47	83.428	1	2031600			65275	3093	53791	53843	71886	71886					-0.03793569229969762
YRKDLEIVL	9	Unmodified	_YRKDLEIVL_					0	0	0		ENSG00000172137|ENST00000302628|CALB2	ENSG00000172137|ENST00000302628|CALB2	ENSG00000172137|ENST00000302628|CALB2	MULTI-MSMS	OvCa9_classI_Rep2	2	574.8358764648438	2	574.837331	1147.66011	0.90554	0.00052054	-1.424	-0.00081856	-0.51844	-0.00029802	574.8365086671698	89.906	5.8582	88.604	88.285	94.143	-1.302					235	114	5	0	0	0	0.3249	4	7917	7912;7917;7947;7973		60.118	5.1941	1	3839600			65276	7266	53792	53844	71887;71888;71889;71890	71888					0.09218560574208823
YRKDLEIVL	9	Unmodified	_YRKDLEIVL_					0	0	0		ENSG00000172137|ENST00000302628|CALB2	ENSG00000172137|ENST00000302628|CALB2	ENSG00000172137|ENST00000302628|CALB2	MULTI-MSMS	OvCa9_classI_Rep3	3	574.8375854492188	2	574.837331	1147.66011	-1.4106	-0.00081085	0.80962	0.0004654	-0.60095	-0.00034545	574.8376960382861	90.862	4.6623	88.781	88.464	93.126	-2.0805					220	93	6	0	0	0	0.33652	5	5668	5651;5668;5720;5725;5732		58.782	7.4465	1	4849000			65277	7266	53792	53844	71891;71892;71893;71894;71895	71892					0.09218560574208823
YRKDLEIVL	9	Unmodified	_YRKDLEIVL_					0	0	0		ENSG00000172137|ENST00000302628|CALB2	ENSG00000172137|ENST00000302628|CALB2	ENSG00000172137|ENST00000302628|CALB2	MULTI-MSMS	OvCa9_classI_Rep4_	4	574.8375244140625	2	574.837331	1147.66011	-0.87533	-0.00050317	0.20724	0.00011913	-0.66808	-0.00038404	574.8373813616681	91.362	5.8049	88.819	88.449	94.254	-2.5425					226	116	5	0	0	0	0.51865	1	7996	7996		40.778	2.9666	1	3993100			65278	7266	53792	53844	71896	71896					0.09218560574208823
YRKFKLVRIRN	11	Unmodified	_YRKFKLVRIRN_					0	0	0		tr|A0A7D6W3W5|A0A7D6W3W5_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11525PE=4SV=1	tr|A0A7D6W3W5|A0A7D6W3W5_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11525PE=4SV=1	tr|A0A7D6W3W5|A0A7D6W3W5_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11525PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	498.3092346191406	3	498.312288	1491.91504	-5.113	-0.0025478	0.297	0.000148	-4.816	-0.0023998	498.3123780141879	160.35	1.8473	160.12	159.68	161.53	-0.22697					120	37	4	0	0	0	0.72573	2	16413	16355;16413		6.001	0.30226	1	150420			65279	35463	53793	53845	71897;71898	71898					0.18875466833128485
YRKFKLVRIRN	11	Unmodified	_YRKFKLVRIRN_					0	0	0		tr|A0A7D6W3W5|A0A7D6W3W5_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11525PE=4SV=1	tr|A0A7D6W3W5|A0A7D6W3W5_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11525PE=4SV=1	tr|A0A7D6W3W5|A0A7D6W3W5_9CLOTYafYfamilytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_11525PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.64453125	3	498.312288	1491.91504	-6.6799	-0.0033287	2.0726	0.0010328	-4.6073	-0.0022959	498.64747174651427	162.29	0.73099	160.67	160.35	161.09	-1.6239					57	19	4	0	0	0	0.7257	1	16028	16028		6.3209	3.1096	1	42371			65280	35463	53793	53845	71899	71899					0.18875466833128485
YRKMKKVKN	9	Unmodified	_YRKMKKVKN_					0	0	0			REV__ENST00000510104.5_1_5:140071123-140075505:+|nuORF	REV__ENST00000510104.5_1_5:140071123-140075505:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8565673828125	2	597.860618	1193.70668	-3.1765	-0.0018991	-3.8999	-0.0023316	-7.0765	-0.0042307	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.6653	1	14840	14840		24.203	4.206	1	436470	+		65281	18123	53794	53846	71900	71900					0.11757721924527686
YRKPVKHP	8	Unmodified	_YRKPVKHP_					0	0	0		ENST00000484437.1_1_3:44779222-44795794:-|nuORF;ENSG00000163807|ENST00000296121|KIAA1143	ENST00000484437.1_1_3:44779222-44795794:-|nuORF	ENST00000484437.1_1_3:44779222-44795794:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	512.8057250976562	2	512.806168	1023.59778	0.96768	0.00049623	-2.1644	-0.0011099	-1.1968	-0.00061371	512.8048988441653	129.99	1.0876	129.77	129.46	130.55	-0.22696					55	21	4	0	0	0	0.74971	1	12796	12796		26.796	0.10319	1	154290			65282	6360	53795	53847	71901	71901					0.08692879016552979
YRKQAAMIL	9	Unmodified	_YRKQAAMIL_					0	0	0		ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	ENSG00000101407|ENST00000373447|TTI1	MULTI-MSMS	OvCa99_classI_Rep5	1	547.313720703125	2	547.312969	1092.61138	0.92598	0.0005068	1.5423	0.00084412	2.4683	0.0013509	547.313722903106	154.49	1.7677	154.49	154.17	155.94	0					62	34	2	0	0	0	0.53957	1	18099	18099		38.806	3.1879	1	250480			65283	2173	53796	53848	71902	71902					0.0687836873348715
YRKTPETFQ	9	Unmodified	_YRKTPETFQ_					0	0	0			REV__tr|A0A7D7A2U4|A0A7D7A2U4_9CLOTUridinekinaseOS=ClostridiumintestinaleOX=36845GN=udkPE=3SV=1	REV__tr|A0A7D7A2U4|A0A7D7A2U4_9CLOTUridinekinaseOS=ClostridiumintestinaleOX=36845GN=udkPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	585.2963256835938	2	585.301113	1168.58767	-7.712	-0.0045139	1.0835	0.00063415	-6.6286	-0.0038797	585.3015077710636	157.9	1.5857	156.73	156.12	157.71	-1.1707					60	43	3	0	0	0	0.63422	1	13626	13626		27.882	3.3631	1	24039	+		65284	32552	53797	53849	71903	71903					0.010122265006430098
YRKVLDVV	8	Unmodified	_YRKVLDVV_					0	0	0			REV__ENSG00000081923|ENST00000648908|ATP8B1	REV__ENSG00000081923|ENST00000648908|ATP8B1	MULTI-MSMS	OvCa9_classI_Rep2	2	496.2997131347656	2	496.300384	990.586216	-0.35919	-0.00017827	0.21743	0.00010791	-0.14176	-7.0356E-05	496.30031555631194	121.97	1.1373	121.75	121.47	122.61	-0.21803					58	22	4	0	0	0	0.73938	1	11832	11832		31.955	1.4512	1	202890	+		65285	17079	53798	53850	71904	71904					0.0905463720255284
YRKVLDVV	8	Unmodified	_YRKVLDVV_					0	0	0			REV__ENSG00000081923|ENST00000648908|ATP8B1	REV__ENSG00000081923|ENST00000648908|ATP8B1	MULTI-MSMS	OvCa9_classI_Rep4_	4	496.29962158203125	2	496.300384	990.586216	-0.20996	-0.0001042	-0.013117	-6.5099E-06	-0.22308	-0.00011071	496.30023015612176	123.47	1.2954	122.1	121.8	123.1	-1.3666					64	25	3	0	0	0	0.75723	1	11744	11744		23.042	1.3402	1	220800	+		65286	17079	53798	53850	71905	71905					0.0905463720255284
YRKYMTVP	8	Unmodified	_YRKYMTVP_					0	0	0		nc|ENSG00000188916|Q6ZSG2-2|INSYN2A;ENSG00000188916|ENST00000522781|INSYN2A	nc|ENSG00000188916|Q6ZSG2-2|INSYN2A	nc|ENSG00000188916|Q6ZSG2-2|INSYN2A	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.8185424804688	2	529.278595	1056.54264	-0.71189	-0.00037679	-2.2505	-0.0011911	-2.9623	-0.0015679	529.7780034700636	116.13	0.14869	114.77	114.65	114.8	-1.3645					4	2	2	0	0	0	0.028476	1	10821	10821		20.482	0	1	3825			65287	8517	53799	53851	71906	71906					0.016627044337838015
YRLAEEDQRQI	11	Unmodified	_YRLAEEDQRQI_					0	0	0			REV__ENSG00000167291|ENST00000310924|TBC1D16	REV__ENSG00000167291|ENST00000310924|TBC1D16	MULTI-SECPEP	OvCa9_classI_Rep3	3	474.93145751953125	3	474.244157	1419.71064	2.0714	0.00098235	2.4452	0.0011596	4.5166	0.002142	474.245267407219	64.464	0.60491	61.471	61.242	61.847	-2.9933					16	11	2	0	0	0	0.02625	1	2493	2493		13.508	0	1	20862	+		65288	21268	53800	53852	71907	71907					0.017574381612803336
YRLFLWQTIWL	11	Unmodified	_YRLFLWQTIWL_					0	0	0			REV__ENSG00000164023|ENST00000690982|SGMS2	REV__ENSG00000164023|ENST00000690982|SGMS2	MULTI-MSMS	OvCa9_classI_Rep2	2	513.6223754882812	3	513.622128	1537.84456	1.1592	0.00059538	-0.51043	-0.00026217	0.64874	0.00033321	513.6218443978763	65.542	1.7967	62.846	62.417	64.213	-2.6958					123	35	5	0	0	0	0.72483	1	5050	5050		17.833	1.3033	1	1337600	+		65289	20922	53801	53853	71908	71908					0.09714748724786659
YRLGGHVLK	9	Unmodified	_YRLGGHVLK_					0	0	0			REV__tr|A0A553SLN4|A0A553SLN4_NIACIGlycerol-3-phosphatedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_20840PE=3SV=1	REV__tr|A0A553SLN4|A0A553SLN4_NIACIGlycerol-3-phosphatedehydrogenaseOS=NialliacirculansOX=1397GN=CEQ21_20840PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	521.8135375976562	2	521.811451	1041.60835	0.66684	0.00034797	2.3999	0.0012523	3.0667	0.0016003	521.8125550496435	68.201	4.7433	65.386	65.063	69.806	-2.8144					153	94	3	0	0	0	0.53957	2	2957	2957;2982		38.806	7.2763	1	529900	+		65290	30244	53802	53854	71909;71910	71909					0.0892086167098114
YRLLLPEP	8	Unmodified	_YRLLLPEP_					0	0	0		nc|ENSG00000177595|Q9HB75-5|PIDD1;nc|ENSG00000177595|Q9HB75-4|PIDD1;ENST00000534525.5_1_11:799959-803120:-|nuORF;ENST00000524486.5_1_11:799309-803120:-|nuORF;nc|ENSG00000177595|Q9HB75-3|PIDD1;nc|ENSG00000177595|Q9HB75-2|PIDD1;ENSG00000177595|ENST00000347755|PIDD1;nc|ENSG00000177595|Q9HB75-7|PIDD1;ENST00000527357.5_1_11:801679-803120:-|nuORF	nc|ENSG00000177595|Q9HB75-5|PIDD1	nc|ENSG00000177595|Q9HB75-5|PIDD1	MULTI-MSMS	OvCa9_classI_Rep2	2	500.7948913574219	2	500.794935	999.575317	-0.33552	-0.00016802	-0.10866	-5.4414E-05	-0.44417	-0.00022244	500.7948099501536	108.45	4.1006	108.22	107.63	111.73	-0.22498					184	82	6	0	0	0	0.53531	1	10161	10161		73.975	2.679	1	2094300			65291	7696	53803	53855	71911	71911					0.07551234828281395
YRLLSDFTKRP	11	Unmodified	_YRLLSDFTKRP_					0	0	0		ENSG00000172497|ENST00000307624|ACOT12	ENSG00000172497|ENST00000307624|ACOT12	ENSG00000172497|ENST00000307624|ACOT12	MULTI-MSMS	OvCa99_classI_Rep5	1	465.92816162109375	3	465.929621	1394.76703	-0.21747	-0.00010133	-2.8067	-0.0013077	-3.0242	-0.0014091	465.92823512734503	23.472	0.64126	23.472	23.195	23.836	0					38	12	5	0	0	0	0.71338	1	348	348		25.068	0.83596	1	592020			65292	7300	53804	53856	71912	71912					0.08544110788579928
YRLLVHGPG	9	Unmodified	_YRLLVHGPG_					0	0	0			REV__ENSG00000178685|ENST00000313028|PARP10	REV__ENSG00000178685|ENST00000313028|PARP10	MULTI-SECPEP	OvCa99_classI_Rep5	1	506.33319091796875	2	506.290351	1010.56615	0.22004	0.00011141	4.2902	0.0021721	4.5102	0.0022835	506.2928580421184	57.754	0.1673	57.754	57.65	57.818	0					5	3	2	0	0	0	0.027462	1	4854	4854		24.203	14.018	1	81903	+		65293	22069	53805	53857	71913	71913					0.061288862626156515
YRLLVHGPG	9	Unmodified	_YRLLVHGPG_					0	0	0			REV__ENSG00000178685|ENST00000313028|PARP10	REV__ENSG00000178685|ENST00000313028|PARP10	MULTI-MATCH	OvCa9_classI_Rep2	2		2	506.290351	1010.56615	-1.1578	-0.0005862	10.962	0.00555	9.8042	0.0049638	506.29570185582503	60.51	1.4206	57.739	57.032	58.453	-2.7702	-0.064116	0.0011171	NaN	24.203	46	26	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	47314	+		65294	22069	53805	53857							0.061288862626156515
YRLPDGHVIHF	11	Unmodified	_YRLPDGHVIHF_					0	0	0		ENSG00000123165|ENST00000371124|ACTRT1	ENSG00000123165|ENST00000371124|ACTRT1	ENSG00000123165|ENST00000371124|ACTRT1	MULTI-SECPEP	OvCa99_classI_Rep5	1	451.2664794921875	3	451.906928	1352.69895	-0.42434	-0.00019176	-0.12108	-5.4717E-05	-0.54543	-0.00024648	451.9070076646701	37.508	0.685	37.508	37.298	37.983	0					29	14	3	0	0	0	0.025612	1	2086	2086		36.318	12.94	1	176820			65295	3580	53806	53858	71914	71914					0.03671285928589896
YRLRLYRRRLW	11	Unmodified	_YRLRLYRRRLW_					0	0	0			REV__ENSG00000147119|ENST00000276055|CHST7	REV__ENSG00000147119|ENST00000276055|CHST7	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.3026123046875	3	550.998704	1649.97428	1.0443	0.00057539	3.6837	0.0020297	4.728	0.0026051	551.334328000162	115.09	0.27558	115.09	114.98	115.25	0					8	5	2	0	0	0	0.026551	1	13155	13155		1.4188	1.0782	1	22199	+		65296	20045	53807	53859	71915	71915					0.17529362847267294
YRLRYRRFCYW	11	Unmodified	_YRLRYRRFCYW_					0	0	0			REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF	REV__ENST00000593099.5_1_17:33325156-33325826:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	561.737060546875	3	561.289266	1680.84597	-0.23346	-0.00013104	3.3491	0.0018798	3.1156	0.0017488	561.6270037439132	34.067	0.28802	34.067	33.969	34.257	0					7	5	2	0	0	0	0.026562	1	1620	1620		0.3405	0.3405	1	15937	+		65297	27958	53808	53860	71916	71916					0.032780595418898884
YRLVAERLFV	10	Unmodified	_YRLVAERLFV_					0	0	0			REV__tr|A0A553SJB6|A0A553SJB6_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_16410PE=4SV=1	REV__tr|A0A553SJB6|A0A553SJB6_NIACIMerRfamilytranscriptionalregulatorOS=NialliacirculansOX=1397GN=CEQ21_16410PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	633.3685913085938	2	633.371872	1264.72919	-4.5141	-0.0028591	0.26314	0.00016666	-4.251	-0.0026925	633.371980183474	152.81	4.1687	152.58	151.09	155.26	-0.22697					361	92	7	0	0	0	0.78463	1	15511	15511		20.947	0	1	369460	+		65298	29990	53809	53861	71917	71917					0.1074164459378153
YRNAYTMVL	9	Oxidation (M)	_YRNAYTM(Oxidation (M))VL_		YRNAYTM(1)VL		YRNAYTM(66)VL	0	0	1		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;CUL3|p.I455Nfs*3|1|0.06|ENSG00000036257|chr2:224503665-224503666|-/T|frameshift_variant	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MSMS	OvCa9_classI_Rep4_	4	573.7855224609375	2	573.784241	1145.55393	-1.0152	-0.00058253	0.94174	0.00054036	-0.073503	-4.2175E-05	573.7844592140136	80.149	2.0443	77.438	76.744	78.788	-2.7106					90	41	4	0	0	0	0.27001	1	6537	6537		66.429	16.405	1	362430			65299	1087	53810	53862	71918	71918		39			-0.013025182627643517
YRNAYTMVL	9	Oxidation (M)	_YRNAYTM(Oxidation (M))VL_					0	0	1		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;CUL3|p.I455Nfs*3|1|0.06|ENSG00000036257|chr2:224503665-224503666|-/T|frameshift_variant	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MATCH	OvCa9_classI_Rep2	2		2	573.784241	1145.55393	-0.67959	-0.00038994	0.8018	0.00046006	0.12221	7.012E-05	573.7843458807173	79.095	2.2205	77.355	76.353	78.574	-1.7398	0.0091598	0.00023762	NaN	66.429	107	43	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	163620			65300	1087	53810	53862				39			-0.013025182627643517
YRNAYTMVL	9	Oxidation (M)	_YRNAYTM(Oxidation (M))VL_					0	0	1		nc|ENSG00000036257|Q13618-2|CUL3;ENSG00000036257|ENST00000264414|CUL3;CUL3|p.I455Nfs*3|1|0.06|ENSG00000036257|chr2:224503665-224503666|-/T|frameshift_variant	nc|ENSG00000036257|Q13618-2|CUL3	nc|ENSG00000036257|Q13618-2|CUL3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	573.784241	1145.55393	-0.32464	-0.00018627	0.21196	0.00012162	-0.11267	-6.465E-05	573.7841423179152	79.585	1.5999	77.245	76.514	78.114	-2.3399	-0.1011	-0.00043926	NaN	66.429	83	31	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	335580			65301	1087	53810	53862				39			-0.013025182627643517
YRNLWRRFRRA	11	Unmodified	_YRNLWRRFRRA_					0	0	0			REV__nc|ENSG00000204183|Q5U4N7|GDF5-AS1	REV__nc|ENSG00000204183|Q5U4N7|GDF5-AS1	MULTI-SECPEP	OvCa9_classI_Rep3	3	532.96533203125	3	531.971037	1592.89128	1.0315	0.00054873	4.0014	0.0021287	5.0329	0.0026774	531.9731092075365	68.66	1.0008	65.845	65.561	66.562	-2.8144					40	19	4	0	0	0	0.026534	1	3067	3067		6.001	0.85868	1	56618	+		65302	29100	53811	53863	71919	71919					0.11855046119285362
YRPPEVIL	8	Unmodified	_YRPPEVIL_					0	0	0		ENST00000569406.5_1_15:74914809-74922221:+|nuORF;ENST00000562078.5_1_15:74917060-74922221:+|nuORF;ENST00000454830.6_1_15:74914310-74922221:+|nuORF;nc|ENSG00000179335|P49761-3|CLK3;ENSG00000179335|ENST00000395066|CLK3	ENST00000569406.5_1_15:74914809-74922221:+|nuORF	ENST00000569406.5_1_15:74914809-74922221:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	493.7876892089844	2	493.78711	985.559667	0.27573	0.00013615	-1.3441	-0.00066367	-1.0683	-0.00052752	493.7863062957216	98.277	1.9447	95.898	95.317	97.262	-2.3786					61	37	3	0	0	0	0.66057	2	8729	8729;8740		51.335	5.3835	1	469580			65303	7816	53812	53864	71920;71921	71920					0.06630948311226348
YRQRAQKL	8	Unmodified	_YRQRAQKL_					0	0	0		ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	ENSG00000174607|ENST00000310836|UGT8	MULTI-MSMS	OvCa9_classI_Rep3	3	531.8176879882812	2	531.811982	1061.60941	-0.70053	-0.00037255	3.2418	0.0017241	2.5413	0.0013515	532.3141153069843	135.98	3.1366	134.88	133.72	136.85	-1.1076					103	63	4	0	0	0	0.7043	1	11076	11076		42.474	3.6683	1	72410			65304	7477	53813	53865	71922	71922					0.08107076039891581
YRRAGSQK	8	Unmodified	_YRRAGSQK_					0	0	0		ENST00000568171.1_1_16:47684769-47697703:+|nuORF;nc|ENSG00000102893|Q93100-4|PHKB;nc|ENSG00000102893|Q93100-2|PHKB;nc|ENSG00000102893|Q93100-3|PHKB;ENSG00000102893|ENST00000323584|PHKB	ENST00000568171.1_1_16:47684769-47697703:+|nuORF	ENST00000568171.1_1_16:47684769-47697703:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	483.2706298828125	2	483.267407	964.520262	0.077285	3.7349E-05	3.5927	0.0017362	3.67	0.0017736	483.2690851765541	66.601	0.52857	66.601	66.328	66.857	0					39	12	5	0	0	0	0.72896	1	6176	6176		37.159	3.6435	1	2898900			65305	2263	53814	53866	71923	71923					0.036582410803816856
YRREAVKQY	9	Unmodified	_YRREAVKQY_					0	0	0		nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	MULTI-MSMS	OvCa99_classI_Rep5	1	404.88787841796875	3	404.887645	1211.64111	1.2621	0.000511	-1.3011	-0.00052681	-0.039038	-1.5806E-05	404.88709827170686	30.856	0.63216	30.856	30.632	31.264	0					42	12	5	0	0	0	0.40818	1	1216	1216		51.193	7.5419	1	2187200			65306	7114	53815	53867	71924	71924					0.043750240031840804
YRREAVKQY	9	Unmodified	_YRREAVKQY_					0	0	0		nc|ENSG00000170525|Q16875-3|PFKFB3;nc|ENSG00000170525|Q16875-2|PFKFB3;ENSG00000170525|ENST00000379775|PFKFB3;nc|ENSG00000170525|Q16875-4|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	nc|ENSG00000170525|Q16875-3|PFKFB3	MULTI-MSMS	OvCa99_classI_Rep5	1	606.8280639648438	2	606.827829	1211.64111	0.17718	0.00010752	-0.54874	-0.00033299	-0.37156	-0.00022547	606.827489491337	30.856	0.63216	30.856	30.632	31.264	0					35	12	5	0	0	0	0.53483	1	1217	1217		24.203	0	1	1279800			65307	7114	53815	53867	71925	71925					0.043750240031840804
YRRIFSKWFQK	11	Unmodified	_YRRIFSKWFQK_					0	0	0			REV__tr|A0A7D6ZXI2|A0A7D6ZXI2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13335PE=4SV=1	REV__tr|A0A7D6ZXI2|A0A7D6ZXI2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13335PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	520.2933959960938	3	520.292894	1557.85685	-1.3935	-0.00072502	2.019	0.0010505	0.62555	0.00032547	520.2939384811542	27.017	0.54899	27.017	26.841	27.39	0					27	10	4	0	0	0	0.72531	1	760	760		11.455	1.8085	1	295700	+		65308	32332	53816	53868	71926	71926					0.1002378518783189
YRRIFSKWFQK	11	Unmodified	_YRRIFSKWFQK_					0	0	0			REV__tr|A0A7D6ZXI2|A0A7D6ZXI2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13335PE=4SV=1	REV__tr|A0A7D6ZXI2|A0A7D6ZXI2_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13335PE=4SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		3	520.292894	1557.85685	-1.3935	-0.00072502	2.019	0.0010505	0.62555	0.00032547	520.2939384811542	27.017	0.54899	27.017	26.841	27.39	0	0	0	NaN	11.455	27	10	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	295700	+		65309	32332	53816	53868							0.1002378518783189
YRRKDGVFL	9	Unmodified	_YRRKDGVFL_					0	0	0		ENSG00000125691|ENST00000479035|RPL23;ENST00000584912.5_1_17:37006588-37006753:-|nuORF;ENST00000584583.1_1_17:37006387-37006753:-|nuORF;ENST00000320371.6_1_21:30369936-30370179:-|nuORF	ENSG00000125691|ENST00000479035|RPL23	ENSG00000125691|ENST00000479035|RPL23	MULTI-MSMS	OvCa99_classI_Rep5	1	577.3291015625	2	577.327465	1152.64038	-1.1153	-0.00064392	0.70012	0.0004042	-0.41523	-0.00023972	577.3278105952908	49.966	1.2701	49.966	49.679	50.949	0					74	28	4	0	0	0	0.44568	2	3755	3755;3779		47.657	6.8792	1	3614400			65310	3723	53817	53869	71927;71928	71927					0.07016229354144343
YRRLARGK	8	Unmodified	_YRRLARGK_					0	0	0			REV__tr|A0A7D7A0J5|A0A7D7A0J5_9CLOTDUF4325domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10215PE=4SV=1	REV__tr|A0A7D7A0J5|A0A7D7A0J5_9CLOTDUF4325domain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_10215PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.3138732910156	2	510.314692	1018.61483	1.0432	0.00053237	4.3408	0.0022152	5.384	0.0027475	510.316600509876	124.41	0.50308	124.41	124.06	124.56	0					21	10	3	0	0	0	0.028476	1	14338	14338		19.36	0	1	161710	+		65311	32449	53818	53870	71929	71929					0.10626799622366434
YRRLWWRSGRR	11	Unmodified	_YRRLWWRSGRR_					0	0	0			REV__nc|nan|A6NJI1|C11orf86	REV__nc|nan|A6NJI1|C11orf86	MULTI-SECPEP	OvCa9_classI_Rep3	3	531.8430786132812	3	531.299153	1590.87563	-0.40673	-0.00021609	-1.5696	-0.00083392	-1.9763	-0.00105	531.2982884068233	87.943	0.71822	85.797	85.582	86.3	-2.1458					34	13	3	0	0	0	0.026518	1	5294	5294		8.4073	6.8843	1	120040	+		65312	21759	53819	53871	71930	71930					0.10382759602225633
YRRQKRWWNAY	11	Unmodified	_YRRQKRWWNAY_					0	0	0		ENSG00000124486|ENST00000378308|USP9X;nc|ENSG00000124486|Q93008-3|USP9X;nc|ENSG00000114374|O00507-2|USP9Y;ENST00000426564.6_1_Y:14821380-14953057:+|nuORF;ENSG00000114374|ENST00000338981|USP9Y	ENSG00000124486|ENST00000378308|USP9X	ENSG00000124486|ENST00000378308|USP9X	MULTI-SECPEP	OvCa99_classI_Rep5	1	543.821044921875	3	542.951531	1625.83276	-0.080036	-4.3456E-05	1.5178	0.00082408	1.4377	0.00078062	543.2873258011628	60.721	0.30039	60.721	60.559	60.859	0					9	6	2	0	0	0	0.026534	1	5316	5316		6.001	2.382	1	167150			65313	3653	53820	53872	71931	71931					0.044879447541916306
YRRWERYSIPY	11	Unmodified	_YRRWERYSIPY_					0	0	0			REV__ENSG00000118017|ENST00000236709|A4GNT	REV__ENSG00000118017|ENST00000236709|A4GNT	MULTI-SECPEP	OvCa99_classI_Rep5	1	530.30712890625	3	530.272158	1587.79465	-0.45635	-0.00024199	4.3198	0.0022907	3.8635	0.0020487	530.2743869664534	53.861	0.2746	53.861	53.733	54.008	0					7	5	2	0	0	0	0.026383	1	4306	4306		17.833	6.3785	1	748410	+		65314	18376	53821	53873	71932	71932					0.024260140488649995
YRTENAIKWYR	11	Unmodified	_YRTENAIKWYR_					0	0	0			REV__nc|ENSG00000169919|P08236-3|GUSB	REV__nc|ENSG00000169919|P08236-3|GUSB	MULTI-SECPEP	OvCa9_classI_Rep4_	4	500.81195068359375	3	500.596642	1498.7681	-0.71535	-0.0003581	0.81814	0.00040956	0.10279	5.1456E-05	500.59687879755813	48.359	0.25817	45.251	45.09	45.348	-3.1077					6	4	2	0	0	0	0.026461	1	2650	2650		8.7993	2.4784	1	14982	+		65315	21498	53822	53874	71933	71933					0.03866325157491701
YRVLNGAQ	8	Unmodified	_YRVLNGAQ_					0	0	0		ENSG00000214787|ENST00000651255|MS4A4E	ENSG00000214787|ENST00000651255|MS4A4E	ENSG00000214787|ENST00000651255|MS4A4E	MULTI-MSMS	OvCa99_classI_Rep5	1	460.7509765625	2	460.751059	919.487565	-0.58282	-0.00026854	0.37048	0.0001707	-0.21234	-9.7835E-05	460.75117652653927	39.513	1.5985	39.513	39.196	40.795	0					72	35	4	0	0	0	0.64026	2	2345	2315;2345		55.504	5.4797	1	7100300			65316	9182	53823	53875	71934;71935	71935					0.0246003395752723
YRVPQYVRY	9	Unmodified	_YRVPQYVRY_					0	0	0			REV__ENST00000465184.1_1_7:94294121-94298055:+|nuORF	REV__ENST00000465184.1_1_7:94294121-94298055:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	622.3353271484375	2	622.332747	1242.65094	-0.45589	-0.00028372	0.24176	0.00015045	-0.21413	-0.00013326	622.3327841646678	63.375	1.4031	59.9	59.625	61.028	-3.475					79	28	4	0	0	0	0.44294	1	4449	4449		47.916	7.8574	1	411840	+		65317	23456	53824	53876	71936	71936					0.039322120085671486
YRVPQYVRY	9	Unmodified	_YRVPQYVRY_					0	0	0			REV__ENST00000465184.1_1_7:94294121-94298055:+|nuORF	REV__ENST00000465184.1_1_7:94294121-94298055:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	622.332747	1242.65094	-2.3365	-0.0014541	2.0828	0.0012962	-0.25376	-0.00015792	622.3338307698087	62.411	1.8935	59.651	58.882	60.775	-2.7593	-0.12407	0.0011672	NaN	47.916	101	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	161350	+		65318	23456	53824	53876							0.039322120085671486
YRVTKAGRR	9	Unmodified	_YRVTKAGRR_					0	0	0			REV__ENSG00000198691|ENST00000370225|ABCA4	REV__ENSG00000198691|ENST00000370225|ABCA4	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.83056640625	2	553.830706	1105.64686	1.4061	0.00077877	-2.5843	-0.0014313	-1.1781	-0.00065248	553.8291816775361	139.45	3.0735	137.95	136.76	139.84	-1.4952					150	61	3	0	0	0	0.70914	1	13707	13707		14.865	0	1	110800	+		65319	23044	53825	53877	71937	71937					0.09826167305504896
YRWLVKQPIQA	11	Unmodified	_YRWLVKQPIQA_					0	0	0			REV__ENSG00000135220|ENST00000251566|UGT2A3;REV__ENSG00000271271|ENST00000604629|UGT2A2	REV__ENSG00000135220|ENST00000251566|UGT2A3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	468.2566223144531	3	467.938228	1400.79285	0.035787	1.6746E-05	3.9361	0.0018419	3.9719	0.0018586	467.9399719825894	63.719	0.8698	60.244	60.012	60.882	-3.475					40	17	3	0	0	0	0.02625	1	4486	4486		24.232	18.533	1	120460	+		65320	19266;23608	53826	53878	71938	71938					0.10849005030900116
YRWLVKQPIQA	11	Unmodified	_YRWLVKQPIQA_					0	0	0			REV__ENSG00000135220|ENST00000251566|UGT2A3;REV__ENSG00000271271|ENST00000604629|UGT2A2	REV__ENSG00000135220|ENST00000251566|UGT2A3	MULTI-MATCH	OvCa9_classI_Rep2	2		3	467.938228	1400.79285	-1.9685	-0.00092115	5.85	0.0027374	3.8815	0.0018163	467.9409054751571	62.798	1.0978	60.054	59.745	60.842	-2.7444	-0.095058	0.00053899	NaN	13.508	49	20	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121870	+		65321	19266;23608	53826	53878							0.10849005030900116
YRYRKEFLRQR	11	Unmodified	_YRYRKEFLRQR_					0	0	0		MYO7B|p.G920Afs*6|1|0.4|ENSG00000169994|chr2:127608822-127608822|G/-|frameshift_variant;nc|ENSG00000169994|Q6PIF6-2|MYO7B;MYO7B|p.A2010Pfs*5|1|0.38|ENSG00000169994|chr2:127636307-127636307|G/-|frameshift_variant;nc|ENSG00000169994|Q6PIF6|MYO7B;ENSG00000169994|ENST00000409816|MYO7B	MYO7B|p.G920Afs*6|1|0.4|ENSG00000169994|chr2:127608822-127608822|G/-|frameshift_variant	MYO7B|p.G920Afs*6|1|0.4|ENSG00000169994|chr2:127608822-127608822|G/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	538.9693603515625	3	538.970702	1613.89028	-0.57459	-0.00030968	-3.5406	-0.0019083	-4.1152	-0.002218	538.9687270761224	40.177	0.55493	40.177	39.971	40.526	0					33	11	5	0	0	0	0.68709	1	2425	2425		34.087	15.555	1	975350			65322	7062	53827	53879	71939	71939					0.10788786959733443
YSCIVQMF	8	Unmodified	_YSCIVQMF_					0	0	0		ENSG00000280021|ENST00000624103|OR51F1	ENSG00000280021|ENST00000624103|OR51F1	ENSG00000280021|ENST00000624103|OR51F1	MULTI-MSMS	OvCa9_classI_Rep4_	4	495.7237854003906	2	495.724806	989.43506	-0.29981	-0.00014862	-4.0382	-0.0020019	-4.3381	-0.0021505	495.7227260803348	76.61	1.2907	73.672	73.412	74.703	-2.9389					64	26	4	0	0	0	0.69415	1	6100	6100		44.531	0	1	681070			65323	9600	53828	53880	71940	71940					-0.060080084919604815
YSDDIPHAL	9	Unmodified	_YSDDIPHAL_					0	0	0		ENSG00000104408|ENST00000220849|EIF3E;ENST00000518442.5_1_8:109247181-109261015:-|nuORF	ENSG00000104408|ENST00000220849|EIF3E	ENSG00000104408|ENST00000220849|EIF3E	MULTI-MSMS	OvCa99_classI_Rep5	1	515.7474975585938	2	515.745639	1029.47673	1.9842	0.0010233	0.72983	0.00037641	2.714	0.0013997	515.7458362885203	84.022	0.91566	84.022	83.757	84.672	0					54	21	5	0	0	0	0.013398	1	8754	8754		157.99	0	1	4052900			65324	2373	53829	53881	71941	71941					-0.036834132074318404
YSEAHSFPN	9	Unmodified	_YSEAHSFPN_					0	0	0		ENST00000523505.1_2_7:106300067-106300283:-|nuORF	ENST00000523505.1_2_7:106300067-106300283:-|nuORF	ENST00000523505.1_2_7:106300067-106300283:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.7477416992188	2	526.227613	1050.44067	-1.5068	-0.0007929	-3.978	-0.0020933	-5.4847	-0.0028862	526.2250278143656	45.974	0.15617	42.901	42.771	42.927	-3.0724					4	2	2	0	0	0	0.027462	1	2375	2375		23.042	6.5693	1	3638.8			65325	13149	53830	53882	71942	71942					-0.08252870384285416
YSEIPVIL	8	Unmodified	_YSEIPVIL_					0	0	0		nc|ENSG00000082684|Q9P283-4|SEMA5B;nc|ENSG00000082684|Q9P283-2|SEMA5B;nc|ENSG00000082684|Q9P283-3|SEMA5B;ENSG00000082684|ENST00000357599|SEMA5B	nc|ENSG00000082684|Q9P283-4|SEMA5B	nc|ENSG00000082684|Q9P283-4|SEMA5B	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.2666320800781	2	467.268219	932.521884	0.056921	2.6597E-05	-2.6584	-0.0012422	-2.6014	-0.0012156	467.2668397699727	22.187	1.3509	20.848	20.321	21.672	-1.3386					61	30	3	0	0	0	0.75991	1	285	285		21.702	0	1	128670			65326	14904	53831	53883	71943	71943					0.05292437325749688
YSELLISLGP	10	Unmodified	_YSELLISLGP_					0	0	0			REV__ITPRIPL2|p.R442Sfs*36|1|0.08|ENSG00000205730|chr16:19115786-19115787|-/CACTCTGTCACCCA|frameshift_variant	REV__ITPRIPL2|p.R442Sfs*36|1|0.08|ENSG00000205730|chr16:19115786-19115787|-/CACTCTGTCACCCA|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	546.7896728515625	2	546.30279	1090.59103	0.96643	0.00052796	0.31918	0.00017437	1.2856	0.00070233	546.30292662297	156.12	0.40506	156.12	155.89	156.29	0					11	7	2	0	0	0	0.026802	1	18309	18309		34.173	14.813	1	14046	+		65327	23226	53832	53884	71944	71944					0.04935476554669549
YSENLPPES	9	Unmodified	_YSENLPPES_					0	0	0		nc|ENSG00000147316|Q8NEM0-3|MCPH1;MCPH1|p.S607Mfs*14|1|0.1|ENSG00000147316|chr8:6445542-6445542|G/-|frameshift_variant;ENSG00000147316|ENST00000344683|MCPH1;nc|ENSG00000147316|Q8NEM0-2|MCPH1	nc|ENSG00000147316|Q8NEM0-3|MCPH1	nc|ENSG00000147316|Q8NEM0-3|MCPH1	MULTI-SECPEP	OvCa99_classI_Rep5	1	518.835693359375	2	518.235104	1034.45566	-0.74011	-0.00038355	-0.97258	-0.00050402	-1.7127	-0.00088757	518.2352786537786	56.042	0.32988	56.042	55.764	56.094	0					9	7	2	0	0	0	0.027433	1	4588	4588		51.335	14.176	1	81563			65328	5349	53833	53885	71945	71945					-0.06019423306952376
YSFGEPHII	9	Unmodified	_YSFGEPHII_					0	0	0			REV__ANGPTL5|p.S175F|1|0.29|ENSG00000187151|chr11:101902637-101902637|G/A|missense_variant	REV__ANGPTL5|p.S175F|1|0.29|ENSG00000187151|chr11:101902637-101902637|G/A|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	531.327880859375	2	531.766374	1061.5182	2.3074	0.001227	0.11881	6.3181E-05	2.4263	0.0012902	531.766432358727	120.78	0.44838	120.78	120.56	121.01	0					14	9	2	0	0	0	0.027462	1	13893	13893		45.952	10.334	1	114700	+		65329	15632	53834	53886	71946	71946					-0.010102324480840252
YSFWLILL	8	Unmodified	_YSFWLILL_					0	0	0		nc|ENSG00000180745|Q8NCR9-2|CLRN3;ENSG00000180745|ENST00000368671|CLRN3	nc|ENSG00000180745|Q8NCR9-2|CLRN3	nc|ENSG00000180745|Q8NCR9-2|CLRN3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	528.2649536132812	2	527.802229	1053.5899	-1.4264	-0.00075286	-2.73	-0.0014409	-4.1564	-0.0021937	527.8013088956792	94.981	0.70174	92.512	92.21	92.912	-2.4685					19	13	2	0	0	0	0.028476	1	8309	8309		29.842	7.8817	1	32494			65330	7883	53835	53887	71947	71947					0.06525306976436696
YSGHGKLE	8	Unmodified	_YSGHGKLE_					0	0	0		ENST00000497699.1_1_10:28970877-28971327:+|nuORF;ENSG00000095739|ENST00000375533|BAMBI;WAC-BAMBI|2|fusion;WAC-BAMBI|1|fusion	ENST00000497699.1_1_10:28970877-28971327:+|nuORF	ENST00000497699.1_1_10:28970877-28971327:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	445.72528076171875	2	445.721967	889.429381	2.3909	0.0010657	4.0751	0.0018164	6.466	0.002882	445.72363855278405	127.28	1.0854	127.28	127.05	128.14	0					43	23	2	0	0	0	0.61436	1	14726	14726		60.972	3.1607	1	377230			65331	1938	53836	53888	71948	71948					-0.019756476877660134
YSGWWWLTF	9	Unmodified	_YSGWWWLTF_					0	0	0		sp|P09705|US29_HCMVAUncharacterizedproteinHHRF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US29PE=3SV=1;sp|F5HG95|US29_HCMVMUncharacterizedproteinUS29OS=Humancytomegalovirus(strainMerlin)OX=295027GN=US29PE=3SV=1	sp|P09705|US29_HCMVAUncharacterizedproteinHHRF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US29PE=3SV=1	sp|P09705|US29_HCMVAUncharacterizedproteinHHRF4OS=Humancytomegalovirus(strainAD169)OX=10360GN=US29PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	622.8397827148438	2	623.290017	1244.56548	-0.4448	-0.00027724	-1.5753	-0.00098189	-2.0201	-0.0012591	623.2890789638493	33.356	0.39698	33.356	33.186	33.583	0					12	7	3	0	0	0	0.027462	1	1535	1535		37.159	18.056	1	52565			65332	32874	53837	53889	71949	71949					-0.04701953177118412
YSHDGAFL	8	Unmodified	_YSHDGAFL_					0	0	0		ENSG00000071127|ENST00000499869|WDR1;SKAP1-WDR1|2|fusion;ENST00000515743.5_1_4:10078742-10093271:-|nuORF;ENST00000502962.5_1_4:10077004-10094774:-|nuORF;nc|ENSG00000071127|O75083-3|WDR1;SKAP1-WDR1|1|fusion	ENSG00000071127|ENST00000499869|WDR1	ENSG00000071127|ENST00000499869|WDR1	MULTI-MSMS	OvCa99_classI_Rep5	1	455.210693359375	2	455.208692	908.402832	0.40742	0.00018546	-0.1482	-6.746E-05	0.25922	0.000118	455.20845265224307	71.842	0.66048	71.842	71.589	72.249	0					39	15	4	0	0	0	0.60486	1	6965	6965		62.978	8.2138	1	1822200			65333	1446	53838	53890	71950	71950					-0.055033365791018696
YSHEHVVT	8	Unmodified	_YSHEHVVT_					0	0	0			REV__tr|A0A553SFB5|A0A553SFB5_NIACIGlycosylhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_08570PE=4SV=1	REV__tr|A0A553SFB5|A0A553SFB5_NIACIGlycosylhydrolaseOS=NialliacirculansOX=1397GN=CEQ21_08570PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	486.75994873046875	2	486.232699	970.450845	-0.45478	-0.00022113	0.55063	0.00026774	0.095857	4.6609E-05	486.2333682565142	61.276	0.30236	61.276	61.156	61.458	0					12	6	3	0	0	0	0.028476	1	5387	5387		31.955	0	1	111260	+		65334	29559	53839	53891	71951	71951					-0.03556262659037657
YSHSPDYKI	9	Unmodified	_YSHSPDYKI_					0	0	0			REV__tr|A0A553SRJ6|A0A553SRJ6_NIACISugarphosphateisomerase/epimeraseOS=NialliacirculansOX=1397GN=CEQ21_01205PE=4SV=1	REV__tr|A0A553SRJ6|A0A553SRJ6_NIACISugarphosphateisomerase/epimeraseOS=NialliacirculansOX=1397GN=CEQ21_01205PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	555.3290405273438	2	555.266739	1108.51892	2.348	0.0013038	0.20345	0.00011297	2.5515	0.0014167	555.2666867134676	95.225	0.76266	95.225	94.648	95.41	0					23	17	2	0	0	0	0.027232	1	10312	10312		76.774	25.439	1	377950	+		65335	30737	53840	53892	71952	71952					-0.030994377990509747
YSILENSIN	9	Unmodified	_YSILENSIN_					0	0	0			REV__ENSG00000169676|ENST00000304374|DRD5	REV__ENSG00000169676|ENST00000304374|DRD5	MULTI-MSMS	OvCa99_classI_Rep5	1	526.7700805664062	2	526.766571	1051.51859	0.78887	0.00041555	3.6139	0.0019037	4.4028	0.0023193	526.768368401263	150.82	0.90779	150.82	150.44	151.35	0					42	17	3	0	0	0	0.2422	1	17665	17665		69.628	6.3214	1	681390	+		65336	21474	53841	53893	71953	71953					-0.005108575189069597
YSIRPLIV	8	Unmodified	_YSIRPLIV_					0	0	0		ITPR3|p.V2611Afs*24|1|0.09|ENSG00000096433|chr6:33694969-33694970|-/CC|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3	ITPR3|p.V2611Afs*24|1|0.09|ENSG00000096433|chr6:33694969-33694970|-/CC|frameshift_variant	ITPR3|p.V2611Afs*24|1|0.09|ENSG00000096433|chr6:33694969-33694970|-/CC|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	480.79766845703125	2	480.797478	959.580402	-0.49439	-0.0002377	0.37583	0.0001807	-0.11856	-5.7003E-05	480.7975395271399	105.99	1.4959	103.97	103.7	105.19	-2.0161					58	28	3	0	0	0	0.61436	1	9640	9640		60.972	13.056	1	268980			65337	1948	53842	53894	71954	71954					0.0989953869089959
YSIRPLIV	8	Unmodified	_YSIRPLIV_					0	0	0		ITPR3|p.V2611Afs*24|1|0.09|ENSG00000096433|chr6:33694969-33694970|-/CC|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3	ITPR3|p.V2611Afs*24|1|0.09|ENSG00000096433|chr6:33694969-33694970|-/CC|frameshift_variant	ITPR3|p.V2611Afs*24|1|0.09|ENSG00000096433|chr6:33694969-33694970|-/CC|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep2	2		2	480.797478	959.580402	-0.81169	-0.00039026	0.8659	0.00041632	0.054211	2.6064E-05	480.7977483393975	104.47	1.3371	103.9	103.62	104.96	-0.57639	-0.049205	0.00058695	NaN	60.972	54	26	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	225330			65338	1948	53842	53894							0.0989953869089959
YSIRPLIV	8	Unmodified	_YSIRPLIV_					0	0	0		ITPR3|p.V2611Afs*24|1|0.09|ENSG00000096433|chr6:33694969-33694970|-/CC|frameshift_variant;ENSG00000096433|ENST00000605930|ITPR3	ITPR3|p.V2611Afs*24|1|0.09|ENSG00000096433|chr6:33694969-33694970|-/CC|frameshift_variant	ITPR3|p.V2611Afs*24|1|0.09|ENSG00000096433|chr6:33694969-33694970|-/CC|frameshift_variant	MULTI-MATCH	OvCa9_classI_Rep3	3		2	480.797478	959.580402	0.59489	0.00028602	-0.45275	-0.00021768	0.14214	6.8342E-05	480.7970437615544	105.31	1.4062	103.96	103.73	105.14	-1.3482	0.019182	-0.00068105	NaN	60.972	65	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	290190			65339	1948	53842	53894							0.0989953869089959
YSITCHLPL	9	Unmodified	_YSITCHLPL_					0	0	0			REV__ENST00000551947.5_1_14:65410101-65410599:+|nuORF	REV__ENST00000551947.5_1_14:65410101-65410599:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.7920532226562	2	523.770603	1045.52665	-0.18474	-9.6762E-05	3.4332	0.0017982	3.2485	0.0017015	523.7723551133877	62.973	0.43798	62.973	62.741	63.179	0					16	10	2	0	0	0	0.027433	1	5627	5627		47.916	10.887	1	366410	+		65340	27489	53843	53895	71955	71955					0.005709981968720967
YSIVSLALI	9	Unmodified	_YSIVSLALI_					0	0	0			REV__ENSG00000132164|ENST00000254488|SLC6A11	REV__ENSG00000132164|ENST00000254488|SLC6A11	MULTI-MSMS	OvCa9_classI_Rep2	2	489.79534912109375	2	489.797143	977.579734	-0.22979	-0.00011255	-2.6264	-0.0012864	-2.8562	-0.001399	489.795669737206	39.474	1.0919	36.764	36.459	37.551	-2.7097					56	21	4	0	0	0	0.52083	1	1925	1925		40.573	0	1	203380	+		65341	19057	53844	53896	71956	71956					0.09004699251181592
YSKAMFGPK	9	Unmodified	_YSKAMFGPK_					0	0	0			REV__ENSG00000135537|ENST00000368977|AFG1L	REV__ENSG00000135537|ENST00000368977|AFG1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	515.2852783203125	2	514.76532	1027.51609	1.8939	0.0009749	-2.2768	-0.001172	-0.38296	-0.00019713	514.7637233722538	99.999	0.70834	99.999	99.736	100.44	0					36	16	3	0	0	0	0.027462	1	11132	11132		39.253	5.0803	1	697230	+		65342	19298	53845	53897	71957	71957					0.003430155424439363
YSKGILLM	8	Unmodified	_YSKGILLM_					0	0	0		NUP155|p.W1314Gfs*4|1|0.1|ENSG00000113569|chr5:37292977-37292977|G/-|frameshift_variant;nc|ENSG00000113569|O75694-2|NUP155;ENSG00000113569|ENST00000231498|NUP155	NUP155|p.W1314Gfs*4|1|0.1|ENSG00000113569|chr5:37292977-37292977|G/-|frameshift_variant	NUP155|p.W1314Gfs*4|1|0.1|ENSG00000113569|chr5:37292977-37292977|G/-|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep3	3	462.77874755859375	2	462.764789	923.515025	1.697	0.00078529	-3.8863	-0.0017984	-2.1893	-0.0010131	462.76229992521655	112.37	1.2814	111.3	110.68	111.96	-1.0753					65	25	3	0	0	0	0.028476	1	8208	8208		57.811	29.557	1	42288			65343	2976	53846	53898	71958	71958					0.05020801173543532
YSKHLLANR	9	Unmodified	_YSKHLLANR_					0	0	0			REV__ENSG00000178177|ENST00000635767|LCORL	REV__ENSG00000178177|ENST00000635767|LCORL	MULTI-SECPEP	OvCa99_classI_Rep5	1	551.7838745117188	2	551.311815	1100.60908	-0.50159	-0.00027653	-1.0222	-0.00056357	-1.5238	-0.0008401	551.3115162282957	23.726	0.24599	23.726	23.547	23.793	0					8	4	3	0	0	0	0.027462	1	357	357		20.947	0	1	25971	+		65344	22047	53847	53899	71959	71959					0.06279656320020877
YSKKDLKAALA	11	Unmodified	_YSKKDLKAALA_					0	0	0			REV__tr|A0A553SJ53|A0A553SJ53_NIACITransketolaseOS=NialliacirculansOX=1397GN=CEQ21_16140PE=4SV=1	REV__tr|A0A553SJ53|A0A553SJ53_NIACITransketolaseOS=NialliacirculansOX=1397GN=CEQ21_16140PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.1890563964844	3	403.239684	1206.69722	1.0045	0.00040506	-2.9773	-0.0012006	-1.9728	-0.00079551	403.57293370961673	50.93	0.77798	50.93	50.64	51.418	0					35	17	4	0	0	0	0.025677	1	3875	3875		25.068	1.6899	1	505740	+		65345	29965	53848	53900	71960	71960					0.10214232119983535
YSKKDLKAALA	11	Unmodified	_YSKKDLKAALA_					0	0	0			REV__tr|A0A553SJ53|A0A553SJ53_NIACITransketolaseOS=NialliacirculansOX=1397GN=CEQ21_16140PE=4SV=1	REV__tr|A0A553SJ53|A0A553SJ53_NIACITransketolaseOS=NialliacirculansOX=1397GN=CEQ21_16140PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	403.239684	1206.69722	0.37511	0.00015126	-1.7637	-0.00071118	-1.3886	-0.00055992	403.572769651708	53.992	0.15014	51.178	51.075	51.225	-2.8139	0.12388	0.0014026	NaN	25.068	4	2	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	4673.9	+		65346	29965	53848	53900							0.10214232119983535
YSKKKKREL	9	Unmodified	_YSKKKKREL_					0	0	0			REV__nc|ENSG00000134571|Q14896-2|MYBPC3	REV__nc|ENSG00000134571|Q14896-2|MYBPC3	MULTI-SECPEP	OvCa9_classI_Rep4_	4	589.77294921875	2	590.364047	1178.71354	-0.25682	-0.00015162	-0.17224	-0.00010168	-0.42906	-0.0002533	590.8652645542395	79.338	0.61604	76.586	76.322	76.938	-2.7514					18	12	2	0	0	0	0.027462	1	6409	6409		25.574	0	1	40953	+		65347	19212	53849	53901	71961	71961					0.13133358076765944
YSKLGADYVW	10	Unmodified	_YSKLGADYVW_					0	0	0		tr|A0A7D7A6M6|A0A7D7A6M6_9CLOTC40familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11395PE=3SV=1	tr|A0A7D7A6M6|A0A7D7A6M6_9CLOTC40familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11395PE=3SV=1	tr|A0A7D7A6M6|A0A7D7A6M6_9CLOTC40familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_11395PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	601.3023071289062	2	601.298039	1200.58152	0.69122	0.00041563	0.071871	4.3216E-05	0.76309	0.00045885	601.29775720328	103.34	1.0032	103.34	102.93	103.94	0					60	23	4	0	0	0	0.48198	1	11567	11567		56.721	0	1	3149900			65348	36198	53850	53902	71962	71962					-0.010742917308789401
YSKSTIWRE	9	Unmodified	_YSKSTIWRE_					0	0	0		tr|A0A553SU92|A0A553SU92_NIACIHTHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06490PE=4SV=1	tr|A0A553SU92|A0A553SU92_NIACIHTHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06490PE=4SV=1	tr|A0A553SU92|A0A553SU92_NIACIHTHdomain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_06490PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	585.2976684570312	2	585.301113	1168.58767	-4.797	-0.0028077	-1.5451	-0.00090435	-6.3421	-0.003712	585.3000293392861	157.32	0.61197	157.1	156.92	157.53	-0.22696					30	19	2	0	0	0	0.69403	1	16020	16020		19.997	0	1	19093			65349	34585	53851	53903	71963	71963					0.010122265006430098
YSKVQDEVI	9	Unmodified	_YSKVQDEVI_					0	0	0		tr|A0A7D6VP20|A0A7D6VP20_9CLOTS-adenosylmethioninedecarboxylaseproenzymeOS=ClostridiumintestinaleOX=36845GN=speHPE=3SV=1	tr|A0A7D6VP20|A0A7D6VP20_9CLOTS-adenosylmethioninedecarboxylaseproenzymeOS=ClostridiumintestinaleOX=36845GN=speHPE=3SV=1	tr|A0A7D6VP20|A0A7D6VP20_9CLOTS-adenosylmethioninedecarboxylaseproenzymeOS=ClostridiumintestinaleOX=36845GN=speHPE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	540.7838745117188	2	540.782222	1079.54989	2.0455	0.0011062	0.97066	0.00052491	3.0162	0.0016311	540.7822644750582	95.554	0.67208	95.554	95.284	95.956	0					37	15	4	0	0	0	0.35444	1	10430	10430		56.721	0	1	2001400			65350	34744	53852	53904	71964	71964					0.013297155152031337
YSLAGFRHL	9	Unmodified	_YSLAGFRHL_					0	0	0		ENST00000308973.8_1_4:38777911-38777989:-|nuORF	ENST00000308973.8_1_4:38777911-38777989:-|nuORF	ENST00000308973.8_1_4:38777911-38777989:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	532.2919921875	2	532.287808	1062.56106	1.9625	0.0010446	2.8824	0.0015343	4.8449	0.0025789	532.2894783860114	90.502	2.6586	90.502	90.186	92.845	0					163	64	4	0	0	0	0.35444	1	9904	9904		56.721	5.3856	1	62418000			65351	10269	53853	53905	71965	71965					0.03228582399970037
YSLFHPLLF	9	Unmodified	_YSLFHPLLF_					0	0	0		ENST00000488347.5_1_X:101149758-101186981:-|nuORF;ENST00000458570.5_1_X:101149758-101187002:-|nuORF	ENST00000488347.5_1_X:101149758-101186981:-|nuORF	ENST00000488347.5_1_X:101149758-101186981:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	568.8119506835938	2	568.810585	1135.60662	0.45212	0.00025717	-0.47722	-0.00027145	-0.025095	-1.4275E-05	568.8101920165078	162.38	0.92078	162.38	161.66	162.58	0					58	18	4	0	0	0	0.22913	2	19014	19014;19039		71.378	8.3995	1	658620			65352	12139	53854	53906	71966;71967	71966					0.04423807862372087
YSLGSCIRVL	10	Carbamidomethyl (C)	_YSLGSC(Carbamidomethyl (C))IRVL_	YSLGSC(1)IRVL		YSLGSC(51)IRVL		0	1	0			REV__nc|ENSG00000148634|Q5GLZ8-6|HERC4	REV__nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-MSMS	OvCa99_classI_Rep5	1	584.3117065429688	2	584.313166	1166.61178	1.6739	0.00097806	-2.5109	-0.0014671	-0.83702	-0.00048908	584.3115855076056	128.57	1.0277	128.57	127.95	128.98	0					45	21	3	0	0	0	0.52321	1	14897	14897		51.335	6.9583	1	814620	+		65353	28920	53855	53907	71968	71968	352				0.03513743662665547
YSLGSCIRVL	10	Carbamidomethyl (C)	_YSLGSC(Carbamidomethyl (C))IRVL_					0	1	0			REV__nc|ENSG00000148634|Q5GLZ8-6|HERC4	REV__nc|ENSG00000148634|Q5GLZ8-6|HERC4	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	584.313166	1166.61178	1.6739	0.00097806	-2.5109	-0.0014671	-0.83702	-0.00048908	584.3115855076056	128.57	1.0277	128.57	127.95	128.98	0	0	0	NaN	51.335	45	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	814620	+		65354	28920	53855	53907			352				0.03513743662665547
YSLKHIQEL	9	Unmodified	_YSLKHIQEL_					0	0	0		ENST00000484541.5_1_10:127478031-127484749:-|nuORF;ENST00000470483.1_1_10:127477439-127483604:-|nuORF;ENST00000465577.5_1_10:127477439-127486658:-|nuORF;ENSG00000188690|ENST00000368797|UROS	ENST00000484541.5_1_10:127478031-127484749:-|nuORF	ENST00000484541.5_1_10:127478031-127484749:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	565.81298828125	2	565.813856	1129.61316	-0.45503	-0.00025746	0.19783	0.00011194	-0.2572	-0.00014552	565.8138361081482	73.998	1.4248	71.511	71.225	72.65	-2.4873					64	28	3	0	0	0	0.055627	1	3643	3643		115.49	36.043	1	458810			65355	8494	53856	53908	71969	71969					0.05353701023091162
YSLKHIQEL	9	Unmodified	_YSLKHIQEL_					0	0	0		ENST00000484541.5_1_10:127478031-127484749:-|nuORF;ENST00000470483.1_1_10:127477439-127483604:-|nuORF;ENST00000465577.5_1_10:127477439-127486658:-|nuORF;ENSG00000188690|ENST00000368797|UROS	ENST00000484541.5_1_10:127478031-127484749:-|nuORF	ENST00000484541.5_1_10:127478031-127484749:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	565.813856	1129.61316	-0.36967	-0.00020917	0.28277	0.00016	-0.086898	-4.9168E-05	565.813849331471	73.661	1.4167	71.261	71.001	72.418	-2.3999	-0.23704	0.00022216	NaN	115.49	77	26	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	246210			65356	8494	53856	53908							0.05353701023091162
YSLKHIQEL	9	Unmodified	_YSLKHIQEL_					0	0	0		ENST00000484541.5_1_10:127478031-127484749:-|nuORF;ENST00000470483.1_1_10:127477439-127483604:-|nuORF;ENST00000465577.5_1_10:127477439-127486658:-|nuORF;ENSG00000188690|ENST00000368797|UROS	ENST00000484541.5_1_10:127478031-127484749:-|nuORF	ENST00000484541.5_1_10:127478031-127484749:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	565.813856	1129.61316	0.86911	0.00049175	-1.1644	-0.00065883	-0.29528	-0.00016707	565.8130125952106	74.953	1.4019	71.722	71.434	72.836	-3.2308	0.22404	-0.0014155	NaN	115.49	65	28	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	312830			65357	8494	53856	53908							0.05353701023091162
YSLLDARLR	9	Unmodified	_YSLLDARLR_					0	0	0			REV__ENSG00000095752|ENST00000264563|IL11	REV__ENSG00000095752|ENST00000264563|IL11	MULTI-MSMS	OvCa9_classI_Rep2	2	553.819580078125	2	553.819473	1105.62439	0.35055	0.00019414	-0.44692	-0.00024751	-0.09637	-5.3372E-05	553.8191095428485	32.261	1.2872	29.551	29.233	30.52	-2.7097					61	25	4	0	0	0	0.61208	1	1087	1087		30.504	1.3336	1	380430	+		65358	17295	53857	53909	71970	71970					0.07580523117212579
YSLLKFLL	8	Unmodified	_YSLLKFLL_					0	0	0			REV__tr|A0A7D6VRU5|A0A7D6VRU5_9CLOTHemeresponseregulatorHssROS=ClostridiumintestinaleOX=36845GN=HZF06_07075PE=4SV=1	REV__tr|A0A7D6VRU5|A0A7D6VRU5_9CLOTHemeresponseregulatorHssROS=ClostridiumintestinaleOX=36845GN=HZF06_07075PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	498.8114318847656	2	498.810054	995.605554	2.0843	0.0010397	-0.51003	-0.00025441	1.5743	0.00078527	498.809684870616	137.45	0.57376	137.45	137.21	137.78	0					21	11	3	0	0	0	0.66992	1	16034	16034		49.442	0	1	104010	+		65359	31446	53858	53910	71971	71971					0.10757593493462991
YSLLLLPLYV	10	Unmodified	_YSLLLLPLYV_					0	0	0			REV__ENST00000514870.1_3_4:106068953-106111627:+|nuORF	REV__ENST00000514870.1_3_4:106068953-106111627:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	597.3583374023438	2	597.36265	1192.71075	-5.0217	-0.0029997	-1.7906	-0.0010696	-6.8122	-0.0040694	597.3613502692024	157	0.93945	156.78	156.54	157.48	-0.22696					63	26	4	0	0	0	0.81289	1	16024	16024		17.365	3.9109	1	80526	+		65360	24286	53859	53911	71972	71972					0.12210089899235754
YSLLSASSEQD	11	Unmodified	_YSLLSASSEQD_					0	0	0		ENST00000579065.1_1_17:8052750-8054072:-|nuORF;nc|ENSG00000179094|O15534-4|PER1;ENSG00000179094|ENST00000317276|PER1	ENST00000579065.1_1_17:8052750-8054072:-|nuORF	ENST00000579065.1_1_17:8052750-8054072:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	600.2722778320312	2	600.274958	1198.53536	-4.8728	-0.002925	0.051292	3.0789E-05	-4.8215	-0.0028942	600.2748840186918	159.86	2.843	158.53	158.01	160.85	-1.3316					169	56	5	0	0	0	0.72064	1	13876	13876		22.58	0.61977	1	277240			65361	7801	53860	53912	71973	71973					-0.0559640142362241
YSLLSSHLSPH	11	Unmodified	_YSLLSSHLSPH_					0	0	0		nc|ENSG00000137274|Q86WA6-2|BPHL	nc|ENSG00000137274|Q86WA6-2|BPHL	nc|ENSG00000137274|Q86WA6-2|BPHL	MULTI-MSMS	OvCa9_classI_Rep4_	4	620.8179321289062	2	620.81967	1239.62479	-0.001792	-1.1125E-06	-3.7276	-0.0023142	-3.7294	-0.0023153	620.8173961382302	38.899	2.1681	35.973	35.7	37.868	-2.9264					130	42	5	0	0	0	0.69455	1	1599	1599		31.53	3.6476	1	2444800			65362	15040	53861	53913	71974	71974					0.014558980464244087
YSLLVKKAT	9	Unmodified	_YSLLVKKAT_					0	0	0			REV__ENSG00000101825|ENST00000217939|MXRA5	REV__ENSG00000101825|ENST00000217939|MXRA5	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.8157958984375	2	511.815867	1021.61718	-1.503	-0.00076926	-1.2056	-0.00061707	-2.7087	-0.0013863	511.81505308667624	50.382	2.4999	47.24	46.61	49.11	-3.1416					108	48	4	0	0	0	0.68424	1	2885	2885		21.96	1.9631	1	301000	+		65363	17519	53862	53914	71975	71975					0.10723790516806275
YSLQGPSIIE	10	Unmodified	_YSLQGPSIIE_					0	0	0		SVEP1|p.S2985Tfs*35|1|0.18|ENSG00000165124|chr9:110406648-110406649|-/GAGAACCACAAGAAGTGTG|frameshift_variant;SVEP1|p.P3171Lfs*10|1|0.28|ENSG00000165124|chr9:110404460-110404481|GGACTGCAGGAGATTCTCTCAG/-|frameshift_variant;ENSG00000165124|ENST00000374469|SVEP1	SVEP1|p.S2985Tfs*35|1|0.18|ENSG00000165124|chr9:110406648-110406649|-/GAGAACCACAAGAAGTGTG|frameshift_variant	SVEP1|p.S2985Tfs*35|1|0.18|ENSG00000165124|chr9:110406648-110406649|-/GAGAACCACAAGAAGTGTG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	553.8197631835938	2	553.790047	1105.56554	0.32212	0.00017838	2.5292	0.0014007	2.8513	0.001579	553.7914934611008	67.354	0.23552	67.354	67.212	67.448	0					6	5	2	0	0	0	0.026522	1	6280	6280		65.465	0	1	174570			65364	6524	53863	53915	71976	71976					0.01698002032230761
YSLRKSKSEI	10	Unmodified	_YSLRKSKSEI_					0	0	0		tr|A0A7D7A0F7|A0A7D7A0F7_9CLOTRrf2familytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_09795PE=4SV=1	tr|A0A7D7A0F7|A0A7D7A0F7_9CLOTRrf2familytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_09795PE=4SV=1	tr|A0A7D7A0F7|A0A7D7A0F7_9CLOTRrf2familytranscriptionalregulatorOS=ClostridiumintestinaleOX=36845GN=HZF06_09795PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	404.1890563964844	3	404.231189	1209.67174	1.0294	0.00041612	0.80155	0.00032401	1.831	0.00074013	404.23142399126294	50.997	0.81455	50.997	50.73	51.544	0					32	18	4	0	0	0	0.026739	1	3875	3875		37.508	0	1	620420			65365	35995	53864	53916	71977	71977					0.07528757597560798
YSLSKIKK	8	Unmodified	_YSLSKIKK_					0	0	0			REV__ENSG00000136144|ENST00000378302|RCBTB1	REV__ENSG00000136144|ENST00000378302|RCBTB1	MULTI-MSMS	OvCa9_classI_Rep4_	4	483.8017883300781	2	483.80276	965.590967	-1.4011	-0.00067785	1.3728	0.00066416	-0.028299	-1.3691E-05	483.80328713273485	119.78	1.049	118.44	118.19	119.24	-1.3444					43	19	4	0	0	0	0.73205	1	11265	11265		35.618	0	1	133180	+		65366	19360	53865	53917	71978	71978					0.10679521345332432
YSLSSAHKV	9	Unmodified	_YSLSSAHKV_					0	0	0		ENSG00000116016|ENST00000263734|EPAS1;ENST00000468530.1_1_2:46608783-46611619:+|nuORF;ENST00000466465.5_1_2:46607308-46611796:+|nuORF	ENSG00000116016|ENST00000263734|EPAS1	ENSG00000116016|ENST00000263734|EPAS1	MULTI-MSMS	OvCa99_classI_Rep5	1	496.2636413574219	2	496.263999	990.513445	-0.81931	-0.00040659	0.10411	5.1667E-05	-0.7152	-0.00035493	496.26387430064756	44.418	0.76262	44.418	44.215	44.977	0					43	16	5	0	0	0	0.1944	1	2998	2998		77.318	14.339	1	2050500			65367	3149	53866	53918	71979	71979					0.01780883409139733
YSLVSREL	8	Unmodified	_YSLVSREL_					0	0	0		ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	ENSG00000119777|ENST00000238788|TMEM214	MULTI-MSMS	OvCa99_classI_Rep5	1	483.7678527832031	2	483.766374	965.518196	0.58261	0.00028185	1.8845	0.00091166	2.4671	0.0011935	483.7670451935391	81.375	0.53368	81.375	81.08	81.613	0					22	12	3	0	0	0	0.58347	1	8376	8376		67.494	0	1	1145600			65368	3394	53867	53919	71980	71980					0.03405767551907957
YSMKLDPT	8	Unmodified	_YSMKLDPT_					0	0	0			REV__nc|ENSG00000226941|Q15415-2|RBMY1F	REV__nc|ENSG00000226941|Q15415-2|RBMY1F	MULTI-SECPEP	OvCa99_classI_Rep5	1	477.2606201171875	2	477.733686	953.452819	-0.6052	-0.00028912	3.8783	0.0018528	3.2731	0.0015637	477.7354881891098	39.937	0.35561	39.937	39.798	40.154	0					9	7	2	0	0	0	0.028476	1	2395	2395		51.335	3.4199	1	54588	+		65369	21484	53868	53920	71981	71981					-0.02576969965457465
YSMLPFTRF	9	Unmodified	_YSMLPFTRF_					0	0	0			REV__ENST00000337451.7_1_15:23021423-23027863:-|nuORF	REV__ENST00000337451.7_1_15:23021423-23027863:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.773681640625	2	581.291702	1160.56885	1.8573	0.0010796	-2.5816	-0.0015006	-0.72427	-0.00042101	581.2902050175858	86.014	0.60104	86.014	85.83	86.431	0					20	14	2	0	0	0	0.027462	1	9059	9059		47.657	14.845	1	1327600	+		65370	24598	53869	53921	71982	71982					-0.005010263947497151
YSMMSREYS	9	Unmodified	_YSMMSREYS_					0	0	0			REV__nc|ENSG00000159140|P18583-2|SON	REV__nc|ENSG00000159140|P18583-2|SON	MULTI-SECPEP	OvCa9_classI_Rep4_	4	576.3441162109375	2	577.236267	1152.45798	-0.84304	-0.00048664	0.74487	0.00042996	-0.098176	-5.6671E-05	577.2364886691424	94.583	1.5011	92.115	91.811	93.312	-2.4685					57	29	3	0	0	0	0.027462	1	8292	8292		35.618	8.9254	1	157040	+		65371	20598	53870	53922	71983	71983					-0.11215034165115867
YSMPSTHAM	9	Unmodified	_YSMPSTHAM_					0	0	0		ENSG00000126821|ENST00000247225|SGPP1	ENSG00000126821|ENST00000247225|SGPP1	ENSG00000126821|ENST00000247225|SGPP1	MULTI-MSMS	OvCa99_classI_Rep5	1	512.7169189453125	2	512.71497	1023.41539	-0.71021	-0.00036414	0.54948	0.00028173	-0.16073	-8.241E-05	512.7151081591029	68.174	0.97853	68.174	67.88	68.858	0					61	23	5	0	0	0	0.16524	2	6416	6416;6443		82.305	17.944	1	8978500			65372	3803	53871	53923	71984;71985	71984					-0.09538384502707231
YSNTLLVLTA	10	Unmodified	_YSNTLLVLTA_					0	0	0		ENST00000533629.5_1_11:65144527-65149406:-|nuORF;nc|ENSG00000162241|Q8N413-2|SLC25A45;ENSG00000162241|ENST00000398802|SLC25A45;ENST00000531791.1_1_11:65146834-65147158:-|nuORF;nc|ENSG00000162241|Q8N413-4|SLC25A45	ENST00000533629.5_1_11:65144527-65149406:-|nuORF	ENST00000533629.5_1_11:65144527-65149406:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	547.80908203125	2	547.808239	1093.60193	-0.63286	-0.00034669	1.7018	0.00093227	1.069	0.00058559	547.8089203979869	48.592	1.4896	45.831	45.28	46.769	-2.7603					73	29	4	0	0	0	0.69073	1	3019	3019		31.53	1.0262	1	224700			65373	6165	53872	53924	71986	71986					0.05886878928936312
YSPELSRIV	9	Unmodified	_YSPELSRIV_					0	0	0		tr|A0A553SIU8|A0A553SIU8_NIACIDEAD/DEAHboxhelicaseOS=NialliacirculansOX=1397GN=CEQ21_15550PE=4SV=1	tr|A0A553SIU8|A0A553SIU8_NIACIDEAD/DEAHboxhelicaseOS=NialliacirculansOX=1397GN=CEQ21_15550PE=4SV=1	tr|A0A553SIU8|A0A553SIU8_NIACIDEAD/DEAHboxhelicaseOS=NialliacirculansOX=1397GN=CEQ21_15550PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.2924194335938	2	532.292756	1062.57096	-1.4286	-0.00076043	1.176	0.00062596	-0.25262	-0.00013447	532.2931822365942	93.909	1.4329	91.401	91.14	92.572	-2.5072					63	29	4	0	0	0	0.22621	1	8205	8205		71.877	11.759	1	518780			65374	33428	53873	53925	71987	71987					0.042177256146942455
YSPLFTFL	8	Unmodified	_YSPLFTFL_					0	0	0			REV__tr|A0A7D7ADK3|A0A7D7ADK3_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23190PE=4SV=1	REV__tr|A0A7D7ADK3|A0A7D7ADK3_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23190PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2735595703125	2	494.262936	986.51132	0.27832	0.00013756	-3.6743	-0.0018161	-3.396	-0.0016785	494.26067739933103	72.61	0.23149	72.61	72.492	72.723	0					7	5	2	0	0	0	0.028476	1	7076	7076		28.254	5.2118	1	67840	+		65375	32695	53874	53926	71988	71988					0.017524546713161726
YSPLFTFL	8	Unmodified	_YSPLFTFL_					0	0	0			REV__tr|A0A7D7ADK3|A0A7D7ADK3_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23190PE=4SV=1	REV__tr|A0A7D7ADK3|A0A7D7ADK3_9CLOTMFStransporterOS=ClostridiumintestinaleOX=36845GN=HZF06_23190PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	494.262936	986.51132	-0.11798	-5.8311E-05	-7.4281	-0.0036715	-7.5461	-0.0037298	494.2590851141965	74.197	1.1015	72.226	71.745	72.847	-1.9711	-0.19231	-0.0011614	NaN	31.955	35	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	49046	+		65376	32695	53874	53926							0.017524546713161726
YSPRSRSPDH	10	Unmodified	_YSPRSRSPDH_					0	0	0		ENSG00000168646|ENST00000307078|AXIN2	ENSG00000168646|ENST00000307078|AXIN2	ENSG00000168646|ENST00000307078|AXIN2	MULTI-MSMS	OvCa99_classI_Rep5	1	401.1955261230469	3	401.195138	1200.56358	0.3776	0.00015149	0.38449	0.00015426	0.76209	0.00030575	401.19524054581433	34.702	1.0769	34.702	34.398	35.475	0					53	22	3	0	0	0	0.50453	1	1697	1697		53.597	11.354	1	1076400			65377	6929	53875	53927	71989	71989					-0.028676139329945727
YSPYITMFI	9	Unmodified	_YSPYITMFI_					0	0	0		tr|A0A553SLQ1|A0A553SLQ1_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_21030PE=4SV=1	tr|A0A553SLQ1|A0A553SLQ1_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_21030PE=4SV=1	tr|A0A553SLQ1|A0A553SLQ1_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_21030PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.3287353515625	2	567.780636	1133.54672	2.79	0.0015841	2.327	0.0013212	5.1169	0.0029053	567.7819112074377	90.343	0.63647	90.343	90.101	90.738	0					32	15	4	0	0	0	0.027462	1	9724	9724		37.159	1.5408	1	1185400			65378	33751	53876	53928	71990	71990					-0.014712508631873789
YSQDDVPTVI	10	Unmodified	_YSQDDVPTVI_					0	0	0			REV__chr19:23403493-23403720|407|18.38|0.93|4.31|-|1|LINC01224,LINC01224|1	REV__chr19:23403493-23403720|407|18.38|0.93|4.31|-|1|LINC01224,LINC01224|1	MULTI-MSMS	OvCa99_classI_Rep5	1	569.2807006835938	2	568.777136	1135.53972	1.871	0.0010642	2.3491	0.0013361	4.2201	0.0024003	568.7784685174931	129.24	1.455	129.24	128.88	130.34	0					59	30	4	0	0	0	0.62299	1	15042	15042		39.253	5.0803	1	516910	+		65379	15971	53877	53929	71991	71991					-0.022628922100466298
YSQLGASRT	9	Unmodified	_YSQLGASRT_					0	0	0		ENST00000559327.1_1_15:65676349-65688574:-|nuORF;nc|ENSG00000103742|Q8TDY8-2|IGDCC4;ENSG00000103742|ENST00000352385|IGDCC4	ENST00000559327.1_1_15:65676349-65688574:-|nuORF	ENST00000559327.1_1_15:65676349-65688574:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	492.3296203613281	2	491.751256	981.487959	1.0637	0.00052307	-2.4922	-0.0012255	-1.4285	-0.00070246	491.74980902559844	131.17	0.56844	131.17	130.82	131.39	0					18	11	2	0	0	0	0.027462	1	15187	15187		30.318	2.4355	1	58673			65380	2340	53878	53930	71992	71992					-0.0035259111328969084
YSQQCYYTAF	10	Unmodified	_YSQQCYYTAF_					0	0	0			REV__nc|ENSG00000251546|P04432|IGKV1D-39	REV__nc|ENSG00000251546|P04432|IGKV1D-39	MULTI-SECPEP	OvCa99_classI_Rep5	1	637.8543701171875	2	637.263339	1272.51212	1.2656	0.0008065	2.1854	0.0013927	3.4509	0.0021992	637.2644174255661	153.94	0.82391	153.94	153.45	154.27	0					21	16	2	0	0	0	0.026659	1	18069	18069		37.812	0.65241	1	37996	+		65381	29171	53879	53931	71993	71993					-0.11323118741938742
YSQSNTVKSL	10	Unmodified	_YSQSNTVKSL_					0	0	0		ENSG00000160785|ENST00000359511|SLC25A44	ENSG00000160785|ENST00000359511|SLC25A44	ENSG00000160785|ENST00000359511|SLC25A44	MULTI-MSMS	OvCa9_classI_Rep2	2	563.7953491210938	2	563.790578	1125.5666	1.9225	0.0010839	1.1198	0.00063135	3.0423	0.0017152	563.7910966326856	87.996	1.2748	86.58	86.155	87.43	-1.4156					83	25	4	0	0	0	0.55109	1	7675	7675		47.96	1.9873	1	1009300			65382	6090	53880	53932	71994	71994					0.008842164011639397
YSRLTARGTVV	11	Unmodified	_YSRLTARGTVV_					0	0	0		nc|ENSG00000054793|O75110-2|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	nc|ENSG00000054793|O75110-2|ATP9A	MULTI-MSMS	OvCa99_classI_Rep5	1	408.2353515625	3	408.234933	1221.68297	0.94228	0.00038467	0.29123	0.00011889	1.2335	0.00050356	408.2350333498439	23.067	1.0429	23.067	22.894	23.937	0					40	20	4	0	0	0	0.70315	1	280	280		28.577	2.5133	1	562900			65383	14876	53881	53933	71995	71995					0.08099579691679537
YSRVIDELN	9	Unmodified	_YSRVIDELN_					0	0	0		tr|A0A7D6ZV96|A0A7D6ZV96_9CLOTConservedphageC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13265PE=4SV=1	tr|A0A7D6ZV96|A0A7D6ZV96_9CLOTConservedphageC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13265PE=4SV=1	tr|A0A7D6ZV96|A0A7D6ZV96_9CLOTConservedphageC-terminaldomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13265PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	554.3078002929688	2	554.785296	1107.55604	0.83225	0.00046172	2.0504	0.0011375	2.8827	0.0015993	554.7861270807929	67.009	0.70827	67.009	66.7	67.408	0					26	17	2	0	0	0	0.027462	1	6295	6295		37.159	5.6293	1	330970			65384	35796	53882	53934	71996	71996					0.006562337467130419
YSSDTQHVL	9	Unmodified	_YSSDTQHVL_					0	0	0			REV__ENSG00000198862|ENST00000361371|LTN1	REV__ENSG00000198862|ENST00000361371|LTN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	524.2804565429688	2	525.248546	1048.48254	2.2799	0.0011975	-2.5763	-0.0013532	-0.29631	-0.00015564	525.2472197802174	75.484	0.79626	75.484	75.005	75.801	0					31	19	2	0	0	0	0.027462	1	7560	7560		14.865	0	1	194680	+		65385	23081	53883	53935	71997	71997					-0.03976314695773908
YSSKVLLL	8	Unmodified	_YSSKVLLL_					0	0	0		nc|ENSG00000158941|Q8N163-2|CCAR2;ENSG00000158941|ENST00000308511|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	nc|ENSG00000158941|Q8N163-2|CCAR2	MULTI-MSMS	OvCa9_classI_Rep2	2	461.7847900390625	2	461.784036	921.553519	0.16084	7.4272E-05	0.28079	0.00012966	0.44163	0.00020394	461.78395685922357	96.563	1.034	95.604	95.281	96.315	-0.95857					47	20	3	0	0	0	0.40148	2	8719	8712;8719		87.754	5.4806	1	336290			65386	5980	53884	53936	71998;71999	71999					0.08960430079730486
YSSLEIPGMRF	11	Unmodified	_YSSLEIPGMRF_					0	0	0		ENST00000477267.1_1_10:102824694-102827451:+|nuORF;ENST00000465807.1_1_10:102826065-102827451:+|nuORF	ENST00000477267.1_1_10:102824694-102827451:+|nuORF	ENST00000477267.1_1_10:102824694-102827451:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	433.884765625	3	433.884913	1298.63291	0.56147	0.00024361	-0.21008	-9.1149E-05	0.35139	0.00015246	433.8848641724313	22.088	1.8023	20.749	20.371	22.174	-1.3386					139	48	6	0	0	0	0.69099	1	312	312		32.751	3.1998	1	1087600			65387	12275	53885	53937	72000	72000					-0.004462910284701138
YSSNIVFGY	9	Unmodified	_YSSNIVFGY_					0	0	0			REV__L1P3_dup682|chr3:196908842-196910335:+|1.1693758815815145|0.2885488685750818|2.02|428.0|48|1|anti-sense	REV__L1P3_dup682|chr3:196908842-196910335:+|1.1693758815815145|0.2885488685750818|2.02|428.0|48|1|anti-sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.3043823242188	2	525.250557	1048.48656	-1.2581	-0.00066084	4.0898	0.0021482	2.8317	0.0014873	525.2523935554665	73.85	0.80589	70.509	70.179	70.985	-3.3412					30	16	2	0	0	0	0.027462	1	5789	5789		25.45	0	1	76758	+		65388	28455	53886	53938	72001	72001					-0.03574225202055459
YSSPEILRV	9	Unmodified	_YSSPEILRV_					0	0	0		TCTN1|p.Y516*|1|0.08|ENSG00000204852|chr12:110647264-110647264|C/-|frameshift_variant;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1;ENST00000397656.8_1_12:111066004-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-5|TCTN1;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-6|TCTN1	TCTN1|p.Y516*|1|0.08|ENSG00000204852|chr12:110647264-110647264|C/-|frameshift_variant	TCTN1|p.Y516*|1|0.08|ENSG00000204852|chr12:110647264-110647264|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	532.2932739257812	2	532.292756	1062.57096	-0.85419	-0.00045468	1.1425	0.00060814	0.28831	0.00015346	532.2931881393284	93.365	1.0607	91.403	91.128	92.189	-1.9617					53	20	4	0	0	0	0.42576	1	5982	5982		49.536	5.4192	1	553100			65389	9032	53887	53939	72002	72002					0.04217725614716983
YSSPEILRV	9	Unmodified	_YSSPEILRV_					0	0	0		TCTN1|p.Y516*|1|0.08|ENSG00000204852|chr12:110647264-110647264|C/-|frameshift_variant;nc|ENSG00000204852|Q2MV58|TCTN1;ENSG00000204852|ENST00000397659|TCTN1;ENST00000397656.8_1_12:111066004-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-5|TCTN1;nc|ENSG00000204852|Q2MV58-4|TCTN1;ENST00000495659.6_1_12:111052207-111085694:+|nuORF;nc|ENSG00000204852|Q2MV58-6|TCTN1	TCTN1|p.Y516*|1|0.08|ENSG00000204852|chr12:110647264-110647264|C/-|frameshift_variant	TCTN1|p.Y516*|1|0.08|ENSG00000204852|chr12:110647264-110647264|C/-|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	532.2930297851562	2	532.292756	1062.57096	-1.4286	-0.00076043	1.176	0.00062596	-0.25262	-0.00013447	532.2931822365942	93.909	1.4329	91.401	91.14	92.572	-2.5072					63	29	4	0	0	0	0.26076	2	8231	8218;8231		67.494	21.521	1	518780			65390	9032	53887	53939	72003;72004	72004					0.04217725614716983
YSSRVRKF	8	Unmodified	_YSSRVRKF_					0	0	0			REV__ENSG00000131711|ENST00000296755|MAP1B	REV__ENSG00000131711|ENST00000296755|MAP1B	MULTI-MSMS	OvCa9_classI_Rep3	3	522.2958984375	2	521.793258	1041.57196	-6.3237	-0.0032997	-1.0591	-0.00055265	-7.3829	-0.0038523	521.7928197803336	157.74	0.67743	156.57	156.31	156.98	-1.1707					34	21	2	0	0	0	0.75241	1	13620	13620		25.45	1.2474	1	15742	+		65391	19028	53888	53940	72005	72005					0.05283984774268902
YSSSVCLQTE	10	Unmodified	_YSSSVCLQTE_					0	0	0			REV__ENST00000534729.5_1_19:37342799-37383898:+|nuORF	REV__ENST00000534729.5_1_19:37342799-37383898:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	558.8176879882812	2	558.747521	1115.48049	0.026074	1.4569E-05	-0.0074232	-4.1477E-06	0.018651	1.0421E-05	558.7481657232089	46.057	0.26043	42.985	42.876	43.136	-3.0724					5	4	2	0	0	0	0.026891	1	2389	2389		31.53	7.0106	1	7390.8	+		65392	25729	53889	53941	72006	72006					-0.07263111495853991
YSTKKIGCGNV	11	Unmodified	_YSTKKIGCGNV_					0	0	0		ENSG00000081386|ENST00000223428|ZNF510	ENSG00000081386|ENST00000223428|ZNF510	ENSG00000081386|ENST00000223428|ZNF510	MULTI-MSMS	OvCa9_classI_Rep3	3	585.296630859375	2	585.302798	1168.59104	-7.712	-0.0045139	-1.7961	-0.0010513	-9.5081	-0.0055651	585.3015077710636	157.9	1.5857	156.73	156.12	157.71	-1.1707					60	43	3	0	0	0	0.72324	1	13614	13614		21.686	2.3258	1	24039			65393	1661	53890	53942	72007	72007					0.013491532830130382
YSTKLYRF	8	Unmodified	_YSTKLYRF_					0	0	0		ENSG00000148925|ENST00000278174|BTBD10;ENST00000549824.1_1_12:53143198-53143681:+|nuORF;nc|ENSG00000148925|Q9BSF8-2|BTBD10	ENSG00000148925|ENST00000278174|BTBD10	ENSG00000148925|ENST00000278174|BTBD10	MULTI-MSMS	OvCa99_classI_Rep5	1	539.2938842773438	2	539.290017	1076.56548	1.8087	0.00097544	0.063074	3.4015E-05	1.8718	0.0010095	539.2898067662024	77.962	0.54475	77.962	77.629	78.174	0					28	12	3	0	0	0	0.62474	1	7882	7882		58.782	5.8453	1	2313300			65394	5432	53891	53943	72008	72008					0.03026046822878925
YSVDPIVGKI	10	Unmodified	_YSVDPIVGKI_					0	0	0			REV__ENST00000485292.1_1_1:24304352-24304433:-|nuORF	REV__ENST00000485292.1_1_1:24304352-24304433:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	545.8123779296875	2	545.810782	1089.60701	1.8667	0.0010189	0.52037	0.00028403	2.3871	0.0013029	545.8107175137653	136.52	0.56886	136.52	136.21	136.77	0					34	11	4	0	0	0	0.52439	1	15931	15931		51.193	3.5354	1	241110	+		65395	26561	53892	53944	72009	72009					0.0657918279155183
YSVGVTLKT	9	Unmodified	_YSVGVTLKT_					0	0	0		ENST00000589878.5_1_19:34663659-34686187:+|nuORF	ENST00000589878.5_1_19:34663659-34686187:+|nuORF	ENST00000589878.5_1_19:34663659-34686187:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	484.2779235839844	2	484.276575	966.538597	1.2659	0.00061305	1.1203	0.00054254	2.3862	0.0011556	484.276922619288	79.072	0.87462	79.072	78.791	79.666	0					36	21	3	0	0	0	0.018335	1	8046	8046		148.99	61.232	1	2187400			65396	14097	53893	53945	72010	72010					0.05398938211715176
YSVNSDKKLYG	11	Unmodified	_YSVNSDKKLYG_					0	0	0		tr|A0A553SQZ3|A0A553SQZ3_NIACITransmembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_00050PE=4SV=1	tr|A0A553SQZ3|A0A553SQZ3_NIACITransmembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_00050PE=4SV=1	tr|A0A553SQZ3|A0A553SQZ3_NIACITransmembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_00050PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	425.74957275390625	3	425.218949	1272.63502	-0.95034	-0.0004041	2.1271	0.00090449	1.1768	0.00050039	425.21980979329345	44.657	0.86995	41.618	41.464	42.334	-3.0385					26	16	2	0	0	0	0.025722	1	2237	2237		41.08	6.9936	1	39749			65397	34210	53894	53946	72011	72011					0.009604609810139664
YSVNSDKKLYG	11	Unmodified	_YSVNSDKKLYG_					0	0	0		tr|A0A553SQZ3|A0A553SQZ3_NIACITransmembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_00050PE=4SV=1	tr|A0A553SQZ3|A0A553SQZ3_NIACITransmembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_00050PE=4SV=1	tr|A0A553SQZ3|A0A553SQZ3_NIACITransmembraneproteinOS=NialliacirculansOX=1397GN=CEQ21_00050PE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	425.218949	1272.63502	0.15	6.3782E-05	0.43878	0.00018658	0.58877	0.00025036	425.2190634371508	44.469	0.7963	41.759	41.452	42.248	-2.7097	0.070693	-0.0018294	NaN	41.08	26	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17896			65398	34210	53894	53946							0.009604609810139664
YSVPIDADI	9	Unmodified	_YSVPIDADI_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	OvCa99_classI_Rep5	1	496.8046875	2	496.75039	991.486227	0.12852	6.3841E-05	-2.5352	-0.0012594	-2.4067	-0.0011955	496.75035816466755	57.92	0.20865	57.92	57.775	57.984	0					6	4	2	0	0	0	0.027462	1	4873	4873		45.952	0	1	49837	+		65399	20257	53895	53947	72012	72012					-0.009856449219228125
YSVVLGTSKL	10	Unmodified	_YSVVLGTSKL_					0	0	0		nc|ENSG00000188086|Q7RTY3-2|PRSS45P;nc|ENSG00000188086|Q7RTY3|PRSS45P	nc|ENSG00000188086|Q7RTY3-2|PRSS45P	nc|ENSG00000188086|Q7RTY3-2|PRSS45P	MSMS	OvCa99_classI_Rep5	1	533.8131103515625	2	533.810782	1065.60701	NaN	NaN	NaN	NaN	NaN	NaN	NaN	160.3	1	160.3	159.8	160.8	0								0	0	0	0.13679	1	18793	18793		30.318	1.1682	1				65400	15228	53896	53948	72013	72013					0.07683182791583931
YSWKYAQL	8	Unmodified	_YSWKYAQL_					0	0	0			REV__ENSG00000188037|ENST00000343257|CLCN1	REV__ENSG00000188037|ENST00000343257|CLCN1	MULTI-SECPEP	OvCa99_classI_Rep5	1	529.7962036132812	2	529.768917	1057.52328	2.3191	0.0012286	-0.76036	-0.00040281	1.5587	0.00082575	529.7683489821081	76.122	0.49139	76.122	75.874	76.365	0					16	11	2	0	0	0	0.028476	1	7633	7633		68.485	0	1	251030	+		65401	22685	53897	53949	72014	72014					-0.0031792858549124503
YSYDDFLDT	9	Unmodified	_YSYDDFLDT_					0	0	0		SVEP1|p.S2985Tfs*35|1|0.18|ENSG00000165124|chr9:110406648-110406649|-/GAGAACCACAAGAAGTGTG|frameshift_variant;SVEP1|p.P3171Lfs*10|1|0.28|ENSG00000165124|chr9:110404460-110404481|GGACTGCAGGAGATTCTCTCAG/-|frameshift_variant;ENSG00000165124|ENST00000374469|SVEP1;ENST00000467821.1_1_9:113205816-113312285:-|nuORF;nc|ENSG00000165124|Q4LDE5-4|SVEP1	SVEP1|p.S2985Tfs*35|1|0.18|ENSG00000165124|chr9:110406648-110406649|-/GAGAACCACAAGAAGTGTG|frameshift_variant	SVEP1|p.S2985Tfs*35|1|0.18|ENSG00000165124|chr9:110406648-110406649|-/GAGAACCACAAGAAGTGTG|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	569.7864990234375	2	569.732394	1137.45024	3.8472	0.0021919	-0.21573	-0.00012291	3.6315	0.002069	569.7318293631344	88.32	0.46487	88.32	88.003	88.467	0					13	10	2	0	0	0	0.027462	1	9372	9372		29.15	0	1	140460			65402	6524	53898	53950	72015	72015					-0.11299146889427902
YSYELKEII	9	Unmodified	_YSYELKEII_					0	0	0		nc|ENSG00000160293|P52735-3|VAV2;nc|ENSG00000160293|P52735-2|VAV2;ENSG00000160293|ENST00000371850|VAV2	nc|ENSG00000160293|P52735-3|VAV2	nc|ENSG00000160293|P52735-3|VAV2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	579.7906494140625	2	579.308072	1156.60159	-1.5519	-0.00089905	2.5708	0.0014893	1.0188	0.00059022	579.3093433692977	145.48	2.5907	144.04	142.99	145.58	-1.4357					119	49	3	0	0	0	0.027462	1	14329	14329		20.947	0	1	30908			65403	6054	53899	53951	72016	72016					0.029554592091017184
YSYRQRERERE	11	Unmodified	_YSYRQRERERE_					0	0	0		ENSG00000065526|ENST00000375759|SPEN;SPEN|p.K1327Rfs*8|1|0.05|ENSG00000065526|chr1:15930219-15930220|-/G|frameshift_variant;SPEN|p.L1328Vfs*10|1|0.05|ENSG00000065526|chr1:15930221-15930222|-/GTCCAATCAAAAAAGCC|frameshift_variant;SPEN|p.S920Wfs*24|1|0.06|ENSG00000065526|chr1:15928998-15928999|-/GGTCTCAAATTCCTGAC|frameshift_variant	ENSG00000065526|ENST00000375759|SPEN	ENSG00000065526|ENST00000375759|SPEN	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.7785034179688	3	524.59396	1570.76005	-0.63165	-0.00033136	-2.9077	-0.0015254	-3.5393	-0.0018567	524.5925658314798	35.781	0.87629	35.781	35.566	36.442	0					63	18	6	0	0	0	0.026401	1	1822	1822		12.433	6.734	1	2823000			65404	1329	53900	53952	72017	72017					-0.0024985382992781524
YTAALISL	8	Unmodified	_YTAALISL_					0	0	0		tr|A0A553SU61|A0A553SU61_NIACICPBPfamilyintramembranemetalloproteaseOS=NialliacirculansOX=1397GN=CEQ21_06325PE=4SV=1	tr|A0A553SU61|A0A553SU61_NIACICPBPfamilyintramembranemetalloproteaseOS=NialliacirculansOX=1397GN=CEQ21_06325PE=4SV=1	tr|A0A553SU61|A0A553SU61_NIACICPBPfamilyintramembranemetalloproteaseOS=NialliacirculansOX=1397GN=CEQ21_06325PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	426.2463073730469	2	426.247286	850.48002	-1.1759	-0.00050123	-1.8651	-0.00079498	-3.041	-0.0012962	426.2464135300909	139.12	1.5749	138.06	137.54	139.11	-1.0595					80	31	4	0	0	0	0.75241	1	11400	11400		25.45	3.7478	1	422340			65405	34571	53901	53953	72018	72018					0.04879881637236849
YTAGKTYGLV	10	Unmodified	_YTAGKTYGLV_					0	0	0		ENSG00000163975|ENST00000296350|MELTF	ENSG00000163975|ENST00000296350|MELTF	ENSG00000163975|ENST00000296350|MELTF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	537.7833862304688	2	536.787307	1071.56006	-0.84994	-0.00045624	-2.4718	-0.0013268	-3.3218	-0.0017831	536.785774524449	59.066	0.99567	55.674	55.4	56.396	-3.392					35	19	3	0	0	0	0.026994	1	3988	3988		32.812	13.452	1	246740			65406	6391	53902	53954	72019	72019					0.027143232404114315
YTAGKTYGLV	10	Unmodified	_YTAGKTYGLV_					0	0	0		ENSG00000163975|ENST00000296350|MELTF	ENSG00000163975|ENST00000296350|MELTF	ENSG00000163975|ENST00000296350|MELTF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	536.787307	1071.56006	-0.42786	-0.00022967	-4.2719	-0.0022931	-4.6998	-0.0025228	536.7851903268191	55.509	0.53086	55.509	55.273	55.804	0	-0.14611	-0.0012671	NaN	45.972	15	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	531910			65407	6391	53902	53954							0.027143232404114315
YTAGKTYGLV	10	Unmodified	_YTAGKTYGLV_					0	0	0		ENSG00000163975|ENST00000296350|MELTF	ENSG00000163975|ENST00000296350|MELTF	ENSG00000163975|ENST00000296350|MELTF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	536.787307	1071.56006	-1.2613	-0.00067704	-1.5274	-0.00081991	-2.7887	-0.0014969	536.7860762057118	58.562	0.70255	55.782	55.487	56.189	-2.7801	0.12718	0.0016793	NaN	45.972	20	13	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	41897			65408	6391	53902	53954							0.027143232404114315
YTAGLLAIVIM	11	Unmodified	_YTAGLLAIVIM_					0	0	0		tr|A0A7D6VSN3|A0A7D6VSN3_9CLOTAscorbate-specificPTSsystemEIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11330PE=3SV=1	tr|A0A7D6VSN3|A0A7D6VSN3_9CLOTAscorbate-specificPTSsystemEIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11330PE=3SV=1	tr|A0A7D6VSN3|A0A7D6VSN3_9CLOTAscorbate-specificPTSsystemEIICcomponentOS=ClostridiumintestinaleOX=36845GN=HZF06_11330PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	582.8363647460938	2	582.838485	1163.66242	-3.0911	-0.0018016	0.60815	0.00035445	-2.483	-0.0014472	582.8383087821258	126.11	0.92725	124.7	124.39	125.32	-1.4143					45	18	4	0	0	0	0.60609	1	11997	11997		44.117	1.7207	1	52224			65409	35040	53903	53955	72020	72020					0.08713272987665732
YTAPYTARL	9	Unmodified	_YTAPYTARL_					0	0	0		tr|A0A553SHC0|A0A553SHC0_NIACIDNA-directedRNApolymerasesubunitbeta'OS=NialliacirculansOX=1397GN=rpoCPE=3SV=1	tr|A0A553SHC0|A0A553SHC0_NIACIDNA-directedRNApolymerasesubunitbeta'OS=NialliacirculansOX=1397GN=rpoCPE=3SV=1	tr|A0A553SHC0|A0A553SHC0_NIACIDNA-directedRNApolymerasesubunitbeta'OS=NialliacirculansOX=1397GN=rpoCPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	528.2802124023438	2	528.279649	1054.54475	-0.34488	-0.00018219	3.312	0.0017497	2.9671	0.0015675	528.2812223205397	109.96	1.6185	108.81	108.24	109.86	-1.1444					90	30	4	0	0	0	0.31747	1	7927	7927		60.972	11.53	1	376170			65410	33255	53904	53956	72021	72021					0.0196545644323578
YTAWVMGAP	9	Unmodified	_YTAWVMGAP_					0	0	0		L1PB1_dup5905|chr7:93807211-93809400:+|8.337698263303487|0.2056128638309657|5.34|416.0|50|2|sense	L1PB1_dup5905|chr7:93807211-93809400:+|8.337698263303487|0.2056128638309657|5.34|416.0|50|2|sense	L1PB1_dup5905|chr7:93807211-93809400:+|8.337698263303487|0.2056128638309657|5.34|416.0|50|2|sense	MULTI-SECPEP	OvCa9_classI_Rep4_	4	498.7890930175781	2	498.236396	994.458238	-0.54478	-0.00027143	-2.6631	-0.0013269	-3.2079	-0.0015983	498.2350108582286	117.13	0.57466	115.76	115.51	116.08	-1.3645					23	10	3	0	0	0	0.027456	1	10940	10940		38.806	0	1	52180			65411	14779	53905	53957	72022	72022					-0.039212463829812805
YTAYRTALS	9	Unmodified	_YTAYRTALS_					0	0	0		FAM180A|p.R160Mfs*6|1|0.05|ENSG00000189320|chr7:135734018-135734019|-/CAACA|frameshift_variant;ENSG00000189320|ENST00000338588|FAM180A	FAM180A|p.R160Mfs*6|1|0.05|ENSG00000189320|chr7:135734018-135734019|-/CAACA|frameshift_variant	FAM180A|p.R160Mfs*6|1|0.05|ENSG00000189320|chr7:135734018-135734019|-/CAACA|frameshift_variant	MULTI-SECPEP	OvCa9_classI_Rep4_	4	524.2692260742188	2	523.269281	1044.52401	-1.1437	-0.00059848	0.28605	0.00014968	-0.85769	-0.0004488	523.7715411755117	69.445	0.34178	65.963	65.811	66.153	-3.4812					8	6	2	0	0	0	0.027441	1	5203	5203		55.504	16.251	1	22640			65412	8548	53906	53958	72023	72023					0.003528660635538472
YTDLFIAL	8	Unmodified	_YTDLFIAL_					0	0	0			REV__ENSG00000169223|ENST00000303127|LMAN2	REV__ENSG00000169223|ENST00000303127|LMAN2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	477.8083801269531	2	478.260394	954.506234	0.048324	2.3112E-05	3.4877	0.0016681	3.5361	0.0016912	478.26321679356346	68.939	0.59024	65.449	65.212	65.802	-3.4902					15	11	2	0	0	0	0.028476	1	5116	5116		28.254	0	1	18907	+		65413	21446	53907	53959	72024	72024					0.02716150808691964
YTDRNLPT	8	Unmodified	_YTDRNLPT_					0	0	0		ENST00000398028.3_1_6:151148820-151149375:+|nuORF	ENST00000398028.3_1_6:151148820-151149375:+|nuORF	ENST00000398028.3_1_6:151148820-151149375:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	490.24432373046875	2	490.245806	978.47706	-1.2971	-0.00063592	-0.0036646	-1.7965E-06	-1.3008	-0.00063771	490.24574571549454	62.48	3.0118	59.721	59.187	62.199	-2.7593					88	57	2	0	0	0	0.7549	1	4673	4673		24.203	0	1	956700			65414	11362	53908	53960	72025	72025					-0.013039934875905601
YTEDLPKET	9	Unmodified	_YTEDLPKET_					0	0	0		tr|A0A7D6W2P7|A0A7D6W2P7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07125PE=4SV=1	tr|A0A7D6W2P7|A0A7D6W2P7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07125PE=4SV=1	tr|A0A7D6W2P7|A0A7D6W2P7_9CLOThistidinekinaseOS=ClostridiumintestinaleOX=36845GN=HZF06_07125PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	548.2950439453125	2	548.263862	1094.51317	0.5196	0.00028488	-2.7962	-0.001533	-2.2765	-0.0012481	548.2624516839807	34.145	0.24871	31.357	31.15	31.399	-2.7881					8	4	2	0	0	0	0.027462	1	961	961		19.997	0	1	22747			65415	35434	53909	53961	72026	72026					-0.030305811013704442
YTFRYPLSL	9	Unmodified	_YTFRYPLSL_					0	0	0		chr22:23779368-23780359|404|73.22|0.78|6.56|+|ENST00000437086|MMP11,MMP11;ENST00000465385.5_1_22:24122222-24125728:+|nuORF;ENSG00000099953|ENST00000215743|MMP11	chr22:23779368-23780359|404|73.22|0.78|6.56|+|ENST00000437086|MMP11,MMP11	chr22:23779368-23780359|404|73.22|0.78|6.56|+|ENST00000437086|MMP11,MMP11	MULTI-MSMS	OvCa99_classI_Rep5	1	580.3138427734375	2	580.310949	1158.60735	1.742	0.0010109	0.93256	0.00054118	2.6746	0.0015521	580.3112909587237	120.37	1.4757	120.37	120.14	121.61	0					77	34	4	0	0	0	0.16264	4	13843	13819;13843;13868;13895		82.75	33.887	1	3397900			65416	465	53910	53962	72027;72028;72029;72030	72028					0.03438602511437239
YTFSEHSVLD	10	Unmodified	_YTFSEHSVLD_					0	0	0		nc|ENSG00000105695|P20916-3|MAG;ENSG00000105695|ENST00000392213|MAG;nc|ENSG00000105695|P20916-2|MAG	nc|ENSG00000105695|P20916-3|MAG	nc|ENSG00000105695|P20916-3|MAG	MULTI-SECPEP	OvCa99_classI_Rep5	1	598.3395385742188	2	599.274761	1196.53497	1.9069	0.0011428	0.77504	0.00046446	2.682	0.0016072	599.7761018934297	129.51	0.41682	129.51	129.4	129.82	0					12	8	2	0	0	0	0.026688	1	15055	15055		40.778	7.9657	1	54053			65417	2491	53911	53963	72031	72031					-0.05543776352783425
YTFTDLNI	8	Unmodified	_YTFTDLNI_					0	0	0			REV__ENST00000486564.5_1_2:31133891-31178528:-|nuORF	REV__ENST00000486564.5_1_2:31133891-31178528:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	494.2723083496094	2	493.745108	985.475663	-0.20675	-0.00010208	0.7665	0.00037846	0.55975	0.00027638	493.74533764216187	73.443	0.86091	73.443	73.195	74.056	0					52	21	3	0	0	0	0.028476	1	7267	7267		23.042	0	1	1252100	+		65418	20547	53912	53964	72032	72032					-0.017656275763442864
YTFVNILVII	10	Unmodified	_YTFVNILVII_					0	0	0			REV__tr|A0A553SQ00|A0A553SQ00_NIACIXylosetransportsystempermeaseproteinXylHOS=NialliacirculansOX=1397GN=CEQ21_14865PE=4SV=1	REV__tr|A0A553SQ00|A0A553SQ00_NIACIXylosetransportsystempermeaseproteinXylHOS=NialliacirculansOX=1397GN=CEQ21_14865PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8563842773438	2	597.860275	1193.706	-3.1765	-0.0018991	-3.3266	-0.0019889	-6.5032	-0.003888	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.62299	2	14897	14897;14942		39.253	6.4404	1	436470	+		65419	30590	53913	53965	72033;72034	72033					0.11689205756488263
YTFVNILVII	10	Unmodified	_YTFVNILVII_					0	0	0			REV__tr|A0A553SQ00|A0A553SQ00_NIACIXylosetransportsystempermeaseproteinXylHOS=NialliacirculansOX=1397GN=CEQ21_14865PE=4SV=1	REV__tr|A0A553SQ00|A0A553SQ00_NIACIXylosetransportsystempermeaseproteinXylHOS=NialliacirculansOX=1397GN=CEQ21_14865PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8567504882812	2	597.860275	1193.706	-2.7036	-0.0016164	-3.9017	-0.0023327	-6.6053	-0.0039491	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.6104	1	12618	12618		40.778	6.6056	1	591030	+		65420	30590	53913	53965	72035	72035					0.11689205756488263
YTGHRHVL	8	Unmodified	_YTGHRHVL_					0	0	0		ENST00000431232.6_1_16:422161-424053:-|nuORF	ENST00000431232.6_1_16:422161-424053:-|nuORF	ENST00000431232.6_1_16:422161-424053:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	491.76507568359375	2	491.764501	981.514448	0.62605	0.00030787	-0.3764	-0.0001851	0.24965	0.00012277	491.7642832688739	81.393	1.6575	81.393	81.037	82.694	0					77	39	3	0	0	0	0.57878	1	8398	8398		68.485	5.1784	1	17981000			65421	11799	53914	53966	72036	72036					0.022951425686983384
YTGLKSAGRRL	11	Unmodified	_YTGLKSAGRRL_					0	0	0		nc|ENSG00000058866|P49619-3|DGKG;nc|ENSG00000058866|P49619-2|DGKG;ENSG00000058866|ENST00000265022|DGKG;nc|ENSG00000136267|Q9Y6T7-2|DGKB;ENSG00000136267|ENST00000402815|DGKB;nc|ENSG00000136267|Q9Y6T7|DGKB;ENST00000480809.5_1_3:185879373-185906153:-|nuORF	nc|ENSG00000058866|P49619-3|DGKG	nc|ENSG00000058866|P49619-3|DGKG	MULTI-MSMS	OvCa9_classI_Rep2	2	611.3556518554688	2	611.356754	1220.69895	-3.7398	-0.0022864	2.6738	0.0016346	-1.0661	-0.00065175	611.3582555648446	150.36	4.4984	150.14	148.72	153.22	-0.22696					333	92	5	0	0	0	0.71789	1	15264	15264		23.523	2.5758	1	331570			65422	1250	53915	53967	72037	72037					0.09743285928607293
YTHLISSL	8	Unmodified	_YTHLISSL_					0	0	0			REV__ENST00000366654.4_1_1:231155326-231155587:-|nuORF	REV__ENST00000366654.4_1_1:231155326-231155587:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	467.2549133300781	2	467.255643	932.496732	-0.73821	-0.00034493	-3.8187	-0.0017843	-4.5569	-0.0021292	467.25377769432754	55.43	1.5714	52.135	51.803	53.374	-3.2944					68	30	3	0	0	0	0.37872	1	3491	3491		92.191	3.5478	1	778630	+		65423	24882	53916	53968	72038	72038					0.027783825231949777
YTHLISSL	8	Unmodified	_YTHLISSL_					0	0	0			REV__ENST00000366654.4_1_1:231155326-231155587:-|nuORF	REV__ENST00000366654.4_1_1:231155326-231155587:-|nuORF	MULTI-MATCH	OvCa99_classI_Rep5	1		2	467.255643	932.496732	-0.47357	-0.00022128	-10.591	-0.0049486	-11.064	-0.0051698	467.2502871874095	51.877	0.87929	51.877	51.291	52.17	0	-0.12901	-0.0052097	NaN	92.191	37	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	416500	+		65424	24882	53916	53968							0.027783825231949777
YTHLISSL	8	Unmodified	_YTHLISSL_					0	0	0			REV__ENST00000366654.4_1_1:231155326-231155587:-|nuORF	REV__ENST00000366654.4_1_1:231155326-231155587:-|nuORF	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	467.255643	932.496732	-0.73821	-0.00034493	-3.8187	-0.0017843	-4.5569	-0.0021292	467.25377769432754	55.43	1.5714	52.135	51.803	53.374	-3.2944	0.12901	0.0011189	NaN	92.191	68	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	778630	+		65425	24882	53916	53968							0.027783825231949777
YTHRMEVSKGK	11	Unmodified	_YTHRMEVSKGK_					0	0	0		ENST00000361846.7_1_1:113068246-113068294:-|nuORF	ENST00000361846.7_1_1:113068246-113068294:-|nuORF	ENST00000361846.7_1_1:113068246-113068294:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	445.7594909667969	3	445.899445	1334.6765	-0.74764	-0.00033337	3.192	0.0014233	2.4443	0.0010899	446.2354417908542	82.925	0.45189	80.628	80.48	80.932	-2.2963					11	8	2	0	0	0	0.026204	1	4735	4735		16.53	0	1	7210.7			65426	10804	53917	53969	72039	72039					0.022553184686785244
YTHRVLAR	8	Unmodified	_YTHRVLAR_					0	0	0		ENSG00000183762|ENST00000400335|KREMEN1;nc|ENSG00000183762|Q96MU8|KREMEN1;nc|ENSG00000183762|Q96MU8-2|KREMEN1	ENSG00000183762|ENST00000400335|KREMEN1	ENSG00000183762|ENST00000400335|KREMEN1	MULTI-SECPEP	OvCa9_classI_Rep3	3	507.814208984375	2	508.293425	1014.5723	-1.0452	-0.00053128	-0.32436	-0.00016487	-1.3696	-0.00069615	508.2926309244809	97.066	0.36091	95.265	95.012	95.373	-1.8006					12	6	2	0	0	0	0.028476	1	6402	6402		115.46	24.682	1	36053			65427	8103	53918	53970	72040	72040					0.06559404494123555
YTIEKAGFVLR	11	Unmodified	_YTIEKAGFVLR_					0	0	0			REV__ENSG00000100312|ENST00000216139|ACR	REV__ENSG00000100312|ENST00000216139|ACR	MULTI-MSMS	OvCa9_classI_Rep2	2	432.916259765625	3	432.915201	1295.72377	-1.1041	-0.00047799	1.0565	0.00045737	-0.047623	-2.0617E-05	432.9158567399814	54.785	2.7829	51.971	51.473	54.256	-2.8139					169	55	5	0	0	0	0.70587	1	3777	3777		27.644	3.4121	1	2816800	+		65428	17396	53919	53971	72041	72041					0.08773921011311359
YTIFELLVAM	10	Unmodified	_YTIFELLVAM_					0	0	0		tr|A0A7D6W382|A0A7D6W382_9CLOTbeta-lactamaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08945PE=3SV=1	tr|A0A7D6W382|A0A7D6W382_9CLOTbeta-lactamaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08945PE=3SV=1	tr|A0A7D6W382|A0A7D6W382_9CLOTbeta-lactamaseOS=ClostridiumintestinaleOX=36845GN=HZF06_08945PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	600.3239135742188	2	600.322668	1198.63078	-2.8982	-0.0017399	4.1671	0.0025016	1.2688	0.0007617	600.3250269871453	152.11	1.1286	150.68	150.36	151.49	-1.435					68	24	4	0	0	0	0.75594	1	15037	15037		24.203	2.2429	1	134150			65429	35445	53920	53972	72042	72042					0.03941280233721045
YTIHRGNDTL	10	Unmodified	_YTIHRGNDTL_					0	0	0			REV__nc|ENSG00000103197|P49815-4|TSC2	REV__nc|ENSG00000103197|P49815-4|TSC2	MULTI-SECPEP	OvCa9_classI_Rep2	2	594.3252563476562	2	595.301644	1188.58874	-0.20619	-0.00012275	2.8824	0.0017159	2.6762	0.0015932	595.3031516684324	70.621	1.4449	68.05	67.613	69.058	-2.5707					63	26	3	0	0	0	0.026826	1	5623	5623		36.447	0	1	346000	+		65430	17603	53921	53973	72043	72043					0.0019844086957618856
YTIIMSPRV	9	Unmodified	_YTIIMSPRV_					0	0	0		ENSG00000181903|ENST00000314259|OR4C6	ENSG00000181903|ENST00000314259|OR4C6	ENSG00000181903|ENST00000314259|OR4C6	MULTI-MSMS	OvCa9_classI_Rep2	2	540.298095703125	2	540.299527	1078.5845	-1.8908	-0.0010216	-0.97544	-0.00052703	-2.8662	-0.0015486	540.2989536670705	38.535	2.9688	35.825	35.469	38.438	-2.7097					158	59	5	0	0	0	0.46377	1	1851	1851		45.952	7.1458	1	1380400			65431	7960	53922	53974	72044	72044					0.04835260122285945
YTIKSHSSL	9	Unmodified	_YTIKSHSSL_					0	0	0		ENSG00000167657|ENST00000545797|DAPK3;ENST00000595279.1_1_19:3959101-3961233:-|nuORF	ENSG00000167657|ENST00000545797|DAPK3	ENSG00000167657|ENST00000545797|DAPK3	MULTI-MSMS	OvCa99_classI_Rep5	1	518.2777709960938	2	518.277106	1034.53966	-0.83222	-0.00043132	0.87026	0.00045104	0.038035	1.9713E-05	518.2771869044442	44.63	0.53634	44.63	44.396	44.932	0					20	11	3	0	0	0	0.16562	1	3038	3038		82.241	27.476	1	588460			65432	6825	53923	53975	72045	72045					0.023771525806068894
YTILKKLISD	10	Unmodified	_YTILKKLISD_					0	0	0		tr|A0A553SR98|A0A553SR98_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00710PE=3SV=1	tr|A0A553SR98|A0A553SR98_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00710PE=3SV=1	tr|A0A553SR98|A0A553SR98_NIACIAlpha-mannosidaseOS=NialliacirculansOX=1397GN=CEQ21_00710PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	597.3583984375	2	597.360639	1192.70673	-5.052	-0.0030179	1.7912	0.00107	-3.2607	-0.0019478	597.3615454958483	157.14	0.96848	155.97	155.65	156.62	-1.1707					64	22	4	0	0	0	0.83835	1	13570	13570		14.137	0	1	132000			65433	34238	53924	53976	72046	72046					0.11808000405517305
YTILLHNI	8	Unmodified	_YTILLHNI_					0	0	0		ENSG00000079257|ENST00000264265|LXN	ENSG00000079257|ENST00000264265|LXN	ENSG00000079257|ENST00000264265|LXN	MULTI-MSMS	OvCa99_classI_Rep5	1	493.78851318359375	2	493.78711	985.559667	1.1619	0.00057372	0.24586	0.0001214	1.4077	0.00069512	493.7871254541252	103.08	1.5169	103.08	102.68	104.19	0					78	35	4	0	0	0	0.051569	1	11498	11498		162.31	51.968	1	8378500			65434	1608	53925	53977	72047	72047					0.06630948311226348
YTINLDLPPY	10	Unmodified	_YTINLDLPPY_					0	0	0		nc|ENSG00000104763|Q13510-3|ASAH1;ENSG00000104763|ENST00000637790|ASAH1;nc|ENSG00000104763|Q13510-2|ASAH1	nc|ENSG00000104763|Q13510-3|ASAH1	nc|ENSG00000104763|Q13510-3|ASAH1	MULTI-MSMS	OvCa99_classI_Rep5	1	604.8139038085938	2	604.813522	1207.61249	1.1635	0.00070372	0.92101	0.00055704	2.0845	0.0012608	604.8139569809358	157.02	1.1578	157.02	156.75	157.91	0					56	22	4	0	0	0	0.5675	1	18415	18415		45.972	1.5951	1	486380			65435	2390	53926	53978	72048	72048					0.016988615833724907
YTIPPGHQV	9	Unmodified	_YTIPPGHQV_					0	0	0		ENSG00000001630|ENST00000003100|CYP51A1;nc|ENSG00000001630|Q16850-2|CYP51A1;ENST00000492267.1_1_3:82855892-82856129:-|nuORF;ENST00000419457.1_1_13:29296686-29297403:-|nuORF	ENSG00000001630|ENST00000003100|CYP51A1	ENSG00000001630|ENST00000003100|CYP51A1	MULTI-MSMS	OvCa9_classI_Rep3	3	506.2669372558594	2	506.266542	1010.51853	0.36786	0.00018623	-0.45891	-0.00023233	-0.091056	-4.6099E-05	506.2661426930151	67.368	3.7219	64.48	62.966	66.688	-2.8873					175	73	3	0	0	0	0.29717	1	2852	2852		63.306	15.391	1	90382			65436	807	53927	53979	72049	72049					0.01369187271757255
YTISLMSLS	9	Oxidation (M)	_YTISLM(Oxidation (M))SLS_		YTISLM(1)SLS		YTISLM(58)SLS	0	0	1			REV__nc|ENSG00000007202|Q14667-2|BLTP2	REV__nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-MSMS	OvCa9_classI_Rep4_	4	515.7584838867188	2	515.759901	1029.50525	-1.208	-0.00062302	-0.98766	-0.0005094	-2.1956	-0.0011324	515.7591988356623	42.506	1.6569	39.526	39.011	40.668	-2.9804					71	30	3	0	0	0	0.34496	1	1984	1984		57.811	9.8957	1	283680	+		65437	16430	53928	53980	72050	72050		391			-0.008324316225071016
YTISLMSLS	9	Oxidation (M)	_YTISLM(Oxidation (M))SLS_					0	0	1			REV__nc|ENSG00000007202|Q14667-2|BLTP2	REV__nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	515.759901	1029.50525	1.0984	0.00056652	-3.5071	-0.0018088	-2.4087	-0.0012423	515.7580482563127	42.186	1.1346	39.477	39.078	40.213	-2.7097	-0.024477	-0.0013122	NaN	57.811	55	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	69485	+		65438	16430	53928	53980				391			-0.008324316225071016
YTISLMSLS	9	Oxidation (M)	_YTISLM(Oxidation (M))SLS_					0	0	1			REV__nc|ENSG00000007202|Q14667-2|BLTP2	REV__nc|ENSG00000007202|Q14667-2|BLTP2	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	515.759901	1029.50525	-1.208	-0.00062302	-0.98766	-0.0005094	-2.1956	-0.0011324	515.7591988356623	42.506	1.6569	39.526	39.011	40.668	-2.9804	0.024477	0.0012867	NaN	57.811	71	30	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	283680	+		65439	16430	53928	53980				391			-0.008324316225071016
YTIYLFLL	8	Unmodified	_YTIYLFLL_					0	0	0		L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|220|1|anti-sense	L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|220|1|anti-sense	L1PA6_dup3351|chr9:62822444-62828465:-|1.1030626431334083|0.4732955736906382|1.22|429.0|220|1|anti-sense	MULTI-MSMS	OvCa9_classI_Rep2	2	523.3034057617188	2	523.302062	1044.58957	-0.69596	-0.0003642	3.5944	0.001881	2.8985	0.0015168	523.3037571142903	138.78	5.0784	138.55	136.89	141.97	-0.22697					286	103	4	0	0	0	0.75915	1	13965	13965		20.482	0	1	130240			65440	14730	53929	53981	72051	72051					0.06905887256561982
YTKAILLNEL	10	Unmodified	_YTKAILLNEL_					0	0	0			REV__ENST00000463418.5_1_2:158157328-158158798:+|nuORF	REV__ENST00000463418.5_1_2:158157328-158158798:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	589.342529296875	2	589.344989	1176.67542	-3.0463	-0.0017953	-0.38122	-0.00022467	-3.4276	-0.00202	589.3446395993452	147.68	4.7213	147.45	146.02	150.75	-0.22697					344	94	5	0	0	0	0.69073	1	15058	15058		31.53	1.2121	1	272220	+		65441	26128	53930	53982	72052	72052					0.09415427371436635
YTKEPKVK	8	Unmodified	_YTKEPKVK_					0	0	0			REV__tr|A0A7D6VP91|A0A7D6VP91_9CLOTHlyDfamilyeffluxtransporterperiplasmicadaptorsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_22090PE=3SV=1	REV__tr|A0A7D6VP91|A0A7D6VP91_9CLOTHlyDfamilyeffluxtransporterperiplasmicadaptorsubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_22090PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	497.7864990234375	2	496.792392	991.570232	0.0036975	1.8369E-06	-0.30639	-0.00015221	-0.3027	-0.00015038	496.79195693738114	66.967	0.89251	64.306	63.9	64.793	-2.661					27	17	2	0	0	0	0.028476	1	5209	5209		18.324	0	1	65913	+		65442	31235	53931	53983	72053	72053					0.07410930965670559
YTKGAARLTLQ	11	Unmodified	_YTKGAARLTLQ_					0	0	0			REV__SCN2A|p.D1935Vfs*2|1|0.11|ENSG00000136531|chr2:165389608-165389609|-/GTTT|frameshift_variant;REV__nc|ENSG00000144285|P35498-3|SCN1A;REV__nc|ENSG00000153253|Q9NY46-4|SCN3A;REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A	REV__nc|ENSG00000196876|Q9UQD0-5|SCN8A	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3502807617188	2	611.351137	1220.68772	2.8968	0.0017709	-3.0844	-0.0018857	-0.18765	-0.00011472	611.3491630908582	125.96	1.25	124.91	124.58	125.83	-1.0525					67	23	4	0	0	0	0.68757	1	9815	9815		33.922	1.1092	1	429160	+		65443	19391;22872;19900;20333	53932	53984	72054	72054					0.08620463834472503
YTKKIKVLSD	10	Unmodified	_YTKKIKVLSD_					0	0	0		tr|A0A7D6ZZB4|A0A7D6ZZB4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19380PE=4SV=1	tr|A0A7D6ZZB4|A0A7D6ZZB4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19380PE=4SV=1	tr|A0A7D6ZZB4|A0A7D6ZZB4_9CLOTUncharacterizedproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_19380PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	597.8550415039062	2	597.858264	1193.70197	-3.1766	-0.0018991	0.037639	2.2503E-05	-3.1389	-0.0018766	597.8580750413126	147.55	4.9199	147.32	145.83	150.75	-0.22696					332	98	5	0	0	0	0.69073	1	15093	15093		31.53	10.583	1	436470			65444	35954	53933	53985	72055	72055					0.11287116262769814
YTKKKAIQL	9	Unmodified	_YTKKKAIQL_					0	0	0		ENSG00000184571|ENST00000616349|PIWIL3;nc|ENSG00000184571|Q7Z3Z3|PIWIL3	ENSG00000184571|ENST00000616349|PIWIL3	ENSG00000184571|ENST00000616349|PIWIL3	MULTI-MSMS	OvCa9_classI_Rep3	3	546.8405151367188	2	546.842416	1091.67028	-7.0439	-0.0038519	3.2968	0.0018028	-3.7471	-0.0020491	546.8440760274939	158.88	1.6198	157.61	157.26	158.88	-1.267					96	31	5	0	0	0	0.68424	1	13755	13755		21.96	1.013	1	890150			65445	8171	53934	53986	72056	72056					0.12811168299458586
YTKKTVKD	8	Unmodified	_YTKKTVKD_					0	0	0			REV__ENST00000510104.5_1_5:140075669-140075852:+|nuORF	REV__ENST00000510104.5_1_5:140075669-140075852:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	491.7858581542969	2	491.782025	981.549496	3.7555	0.0018469	4.331	0.0021299	8.0866	0.0039768	491.78412902476117	26.103	0.75454	23.393	23.207	23.961	-2.7097					24	17	2	0	0	0	0.7594	1	326	326		21.96	0	1	45243	+		65446	26934	53935	53987	72057	72057					0.05798340585999995
YTKLKLQVN	9	Unmodified	_YTKLKLQVN_					0	0	0		nc|ENSG00000149782|Q01970-2|PLCB3;ENSG00000149782|ENST00000279230|PLCB3	nc|ENSG00000149782|Q01970-2|PLCB3	nc|ENSG00000149782|Q01970-2|PLCB3	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.8302001953125	2	553.832049	1105.64954	0.13277	7.3535E-05	-3.4573	-0.0019148	-3.3245	-0.0018412	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.63422	1	13990	13990		27.882	2.4321	1	400120			65447	5488	53936	53988	72058	72058					0.10094577919812764
YTKNQKVLL	9	Unmodified	_YTKNQKVLL_					0	0	0			REV__ENST00000473684.5_3_3:119149608-119149695:-|nuORF	REV__ENST00000473684.5_3_3:119149608-119149695:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	553.830078125	2	553.832049	1105.64954	-3.0789	-0.0017052	-0.62523	-0.00034627	-3.7041	-0.0020514	553.8315760998031	142.25	4.7032	141.24	140	144.7	-1.0106					319	94	4	0	0	0	0.63422	1	11958	11958		27.882	0	1	308210	+		65448	26332	53937	53989	72059	72059					0.10094577919812764
YTKPNPNQI	9	Unmodified	_YTKPNPNQI_					0	0	0		nc|ENSG00000149480|O94776-2|MTA2;ENSG00000149480|ENST00000278823|MTA2	nc|ENSG00000149480|O94776-2|MTA2	nc|ENSG00000149480|O94776-2|MTA2	MULTI-MSMS	OvCa99_classI_Rep5	1	537.7841796875	2	537.782556	1073.55056	0.041159	2.2134E-05	-0.47118	-0.00025339	-0.43002	-0.00023126	537.7822425714564	57.012	0.77603	57.012	56.662	57.438	0					49	17	4	0	0	0	0.083631	2	4758	4758;4783		101.6	48.664	1	2150900			65449	5461	53938	53990	72060;72061	72060					0.016725549548937124
YTLDKKPLK	9	Unmodified	_YTLDKKPLK_					0	0	0		nc|ENSG00000154529|Q96NU0-2|CNTNAP3B;ENSG00000154529|ENST00000377561|CNTNAP3B	nc|ENSG00000154529|Q96NU0-2|CNTNAP3B	nc|ENSG00000154529|Q96NU0-2|CNTNAP3B	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.3321533203125	2	553.334424	1104.6543	-3.6376	-0.0020128	-0.28672	-0.00015865	-3.9243	-0.0021714	553.3340858441829	153.01	1.0617	151.57	151.24	152.3	-1.435					63	25	4	0	0	0	0.69666	1	15144	15144		19.104	0.77911	1	106460			65450	5744	53939	53991	72062	72062					0.10615462062560255
YTLFERLP	8	Unmodified	_YTLFERLP_					0	0	0			REV__DOCK4|p.F1456Lfs*4|1|0.11|ENSG00000128512|chr7:111755521-111755536|ACGCTTTTCCACTTCA/-|frameshift_variant	REV__DOCK4|p.F1456Lfs*4|1|0.11|ENSG00000128512|chr7:111755521-111755536|ACGCTTTTCCACTTCA/-|frameshift_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	519.2421264648438	2	519.784567	1037.55458	-0.48251	-0.0002508	-1.1536	-0.00059964	-1.6361	-0.00085044	520.2847168901462	65.221	0.43434	65.221	64.875	65.309	0					14	10	2	0	0	0	0.028476	1	5976	5976		38.806	5.9937	1	161360	+		65451	16330	53940	53992	72063	72063					0.037306444486148393
YTLFQVLL	8	Unmodified	_YTLFQVLL_					0	0	0		tr|A0A553SL98|A0A553SL98_NIACIAminotransferaseOS=NialliacirculansOX=1397GN=CEQ21_20200PE=3SV=1	tr|A0A553SL98|A0A553SL98_NIACIAminotransferaseOS=NialliacirculansOX=1397GN=CEQ21_20200PE=3SV=1	tr|A0A553SL98|A0A553SL98_NIACIAminotransferaseOS=NialliacirculansOX=1397GN=CEQ21_20200PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	498.7887268066406	2	498.791861	995.569169	-0.82368	-0.00041084	-3.8314	-0.0019111	-4.6551	-0.0023219	498.78992392916325	116.11	3.0188	115.07	114.6	117.62	-1.0414					179	60	5	0	0	0	0.44269	1	8668	8668		83.287	0.98216	1	2745900			65452	33701	53941	53993	72064	72064					0.07120716596762122
YTLGVKQLL	9	Unmodified	_YTLGVKQLL_					0	0	0		ENST00000458319.1_1_7:14230834-14230924:+|nuORF	ENST00000458319.1_1_7:14230834-14230924:+|nuORF	ENST00000458319.1_1_7:14230834-14230924:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	517.8177490234375	2	517.815867	1033.61718	-2.5915	-0.0013419	-0.29444	-0.00015247	-2.8859	-0.0014944	517.8154729468051	103.88	0.76793	103.88	103.55	104.32	0					39	17	3	0	0	0	0.045281	1	11622	11622		122.18	0	1	2448000			65453	12137	53942	53994	72065	72065					0.10171790516801593
YTLLVYALL	9	Unmodified	_YTLLVYALL_					0	0	0			REV__ENSG00000187688|ENST00000338560|TRPV2	REV__ENSG00000187688|ENST00000338560|TRPV2	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.8173828125	2	534.820618	1067.62668	-5.8065	-0.0031054	1.4853	0.00079435	-4.3212	-0.0023111	534.8213016875221	156.13	0.42426	154.64	154.45	154.88	-1.4911					24	13	3	0	0	0	0.59983	1	15452	15452		31.955	0	1	29045	+		65454	22655	53943	53995	72066	72066					0.09557558802316635
YTLLVYALL	9	Unmodified	_YTLLVYALL_					0	0	0			REV__ENSG00000187688|ENST00000338560|TRPV2	REV__ENSG00000187688|ENST00000338560|TRPV2	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		2	534.820618	1067.62668	-5.8065	-0.0031054	1.4853	0.00079435	-4.3212	-0.0023111	534.8213016875221	156.13	0.42426	154.64	154.45	154.88	-1.4911	0.024991	0.00027933	NaN	31.955	24	13	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29045	+		65455	22655	53943	53995							0.09557558802316635
YTLSSILLALQ	11	Unmodified	_YTLSSILLALQ_					0	0	0		nc|ENSG00000177414|Q5VVX9-2|UBE2U;ENSG00000177414|ENST00000371077|UBE2U;nc|ENSG00000177414|Q5VVX9|UBE2U	nc|ENSG00000177414|Q5VVX9-2|UBE2U	nc|ENSG00000177414|Q5VVX9-2|UBE2U	MULTI-MSMS	OvCa9_classI_Rep3	3	611.3551635742188	2	611.358096	1220.70164	-3.1571	-0.0019301	-0.12375	-7.5658E-05	-3.2809	-0.0020058	611.3578562966479	150.49	4.5071	149.53	148.25	152.75	-0.95647					319	90	4	0	0	0	0.71789	1	12854	12854		23.523	0.48021	1	666990			65456	7678	53944	53996	72067	72067					0.1001169654291516
YTLTIFLVLIS	11	Unmodified	_YTLTIFLVLIS_					0	0	0			REV__tr|A0A553SLQ1|A0A553SLQ1_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_21030PE=4SV=1	REV__tr|A0A553SLQ1|A0A553SLQ1_NIACIMFStransporterOS=NialliacirculansOX=1397GN=CEQ21_21030PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	641.8825073242188	2	641.88649	1281.75843	-5.3554	-0.0034376	-0.73768	-0.00047351	-6.0931	-0.0039111	641.8858646302818	152.97	4.2049	152	150.69	154.89	-0.97299					358	92	5	0	0	0	0.72511	1	13355	13355		14.137	0	1	804890	+		65457	30249	53945	53997	72068	72068					0.12881744099422576
YTMGLKNAR	9	Unmodified	_YTMGLKNAR_					0	0	0		nc|ENSG00000165480|Q8IX90-3|SKA3;ENST00000298260.8_1_13:21729833-21750660:-|nuORF;ENSG00000165480|ENST00000314759|SKA3	nc|ENSG00000165480|Q8IX90-3|SKA3	nc|ENSG00000165480|Q8IX90-3|SKA3	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.7655029296875	2	527.279126	1052.5437	1.8852	0.00099403	-1.085	-0.0005721	0.8002	0.00042193	527.2784246218702	76.754	0.28207	76.754	76.6	76.882	0					11	6	2	0	0	0	0.027462	1	7693	7693		31.53	0	1	259550			65458	6565	53946	53998	72069	72069					0.019529188026808697
YTMHDHNTL	9	Unmodified	_YTMHDHNTL_					0	0	0		nc|ENSG00000157827|Q96PY5|FMNL2;ENSG00000157827|ENST00000288670|FMNL2	nc|ENSG00000157827|Q96PY5|FMNL2	nc|ENSG00000157827|Q96PY5|FMNL2	MULTI-SECPEP	OvCa99_classI_Rep5	1	566.2913208007812	2	566.248023	1130.48149	2.2765	0.0012891	0.64846	0.00036719	2.925	0.0016562	566.2479319276388	137.74	0.23618	137.74	137.54	137.78	0					6	4	2	0	0	0	0.027462	1	16073	16073		16.473	0	1	18144			65459	5913	53947	53999	72070	72070					-0.0785285233630475
YTMKGASIETI	11	Unmodified	_YTMKGASIETI_					0	0	0		tr|A0A7D6ZZL9|A0A7D6ZZL9_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06740PE=3SV=1	tr|A0A7D6ZZL9|A0A7D6ZZL9_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06740PE=3SV=1	tr|A0A7D6ZZL9|A0A7D6ZZL9_9CLOTFAD-dependentoxidoreductaseOS=ClostridiumintestinaleOX=36845GN=HZF06_06740PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	607.3153076171875	2	607.310289	1212.60602	2.0773	0.0012616	3.9023	0.0023699	5.9796	0.0036315	607.3125547207642	106.87	1.4593	105.6	105.22	106.68	-1.267					86	28	4	0	0	0	0.23673	6	7571	7549;7565;7571;7583;7591;7610		75.043	10.836	1	1736200			65460	35966	53948	54000	72071;72072;72073;72074;72075;72076	72073					0.008226003603567733
YTMRILPSKL	10	Unmodified	_YTMRILPSKL_					0	0	0			REV__ENSG00000204022|ENST00000371939|LIPJ	REV__ENSG00000204022|ENST00000371939|LIPJ	MULTI-MSMS	OvCa9_classI_Rep4_	4	611.3529663085938	2	611.354834	1220.69511	-1.5159	-0.00092675	3.5051	0.0021428	1.9892	0.0012161	611.3567832501896	147.85	3.7824	146.41	144.39	148.17	-1.4351					181	75	4	0	0	0	0.80581	1	14537	14537		18.262	1.7889	1	164640	+		65461	23122	53949	54001	72077	72077					0.09359480110538243
YTNKLVLV	8	Unmodified	_YTNKLVLV_					0	0	0			REV__ENST00000274242.9_2_5:40832528-40832603:-|nuORF	REV__ENST00000274242.9_2_5:40832528-40832603:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	475.2892150878906	2	475.289485	948.564418	-0.10021	-4.7628E-05	-0.093334	-4.436E-05	-0.19354	-9.1989E-05	475.2893194844011	95.83	1.6809	94.802	94.466	96.147	-1.0281					85	33	4	0	0	0	0.67872	1	8625	8625		47.657	4.7931	1	682860	+		65462	24088	53950	54002	72078	72078					0.08807832453987885
YTNLHAVLL	9	Unmodified	_YTNLHAVLL_					0	0	0		ENSG00000124212|ENST00000244043|PTGIS	ENSG00000124212|ENST00000244043|PTGIS	ENSG00000124212|ENST00000244043|PTGIS	MULTI-MSMS	OvCa9_classI_Rep2	2	522.2960815429688	2	522.297842	1042.58113	-0.45713	-0.00023876	0.17719	9.2543E-05	-0.27995	-0.00014622	522.297746706886	99.648	1.0909	98.818	98.467	99.558	-0.83052					63	21	4	0	0	0	0.31747	1	9085	9085		60.972	9.6365	1	252010			65463	3634	53951	54003	72079	72079					0.06154333339964069
YTNLHAVLL	9	Unmodified	_YTNLHAVLL_					0	0	0		ENSG00000124212|ENST00000244043|PTGIS	ENSG00000124212|ENST00000244043|PTGIS	ENSG00000124212|ENST00000244043|PTGIS	MULTI-MSMS	OvCa9_classI_Rep3	3	522.2982788085938	2	522.297842	1042.58113	-0.86048	-0.00044943	0.020293	1.0599E-05	-0.84019	-0.00043883	522.2974281798174	100.54	1.3601	98.933	98.612	99.972	-1.6053					79	26	5	0	0	0	0.19758	1	6829	6829		76.774	12.567	1	361150			65464	3634	53951	54003	72080	72080					0.06154333339964069
YTNLHAVLL	9	Unmodified	_YTNLHAVLL_					0	0	0		ENSG00000124212|ENST00000244043|PTGIS	ENSG00000124212|ENST00000244043|PTGIS	ENSG00000124212|ENST00000244043|PTGIS	MULTI-MSMS	OvCa9_classI_Rep4_	4	522.2973022460938	2	522.297842	1042.58113	-1.0898	-0.00056922	-1.0876	-0.00056807	-2.1775	-0.0011373	522.2970284175198	101.17	1.2156	98.902	98.602	99.817	-2.2665					60	24	3	0	0	0	0.21231	2	9070	9070;9082		74.255	12.148	1	331260			65465	3634	53951	54003	72081;72082	72081					0.06154333339964069
YTPQNIQLSH	10	Unmodified	_YTPQNIQLSH_					0	0	0			REV__ENST00000468428.1_1_20:17594717-17594834:-|nuORF	REV__ENST00000468428.1_1_20:17594717-17594834:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	400.2189636230469	3	400.871772	1199.59349	0.69892	0.00028018	-1.3233	-0.00053047	-0.62439	-0.0002503	400.8711534730073	44.373	0.57975	44.373	44.215	44.795	0					17	12	2	0	0	0	0.026782	1	3043	3043		28.577	18.931	1	288510	+		65466	26223	53952	54004	72083	72083					0.0016732501235310338
YTQLIIRIET	10	Unmodified	_YTQLIIRIET_					0	0	0			REV__nc|ENSG00000284862|Q9UFE4|CCDC39	REV__nc|ENSG00000284862|Q9UFE4|CCDC39	MULTI-SECPEP	OvCa9_classI_Rep4_	4	416.8547668457031	3	417.243206	1248.70779	1.0161	0.00042394	-1.1734	-0.00048961	-0.15739	-6.567E-05	417.24269427322895	67.464	0.69095	63.974	63.739	64.43	-3.4902					25	13	4	0	0	0	0.026931	1	5003	5003		22.562	15.902	1	58181	+		65467	29202	53953	54005	72084	72084					0.09338214774402331
YTRGYVEI	8	Unmodified	_YTRGYVEI_					0	0	0			REV__ENSG00000135829|ENST00000367549|DHX9	REV__ENSG00000135829|ENST00000367549|DHX9	MULTI-MSMS	OvCa99_classI_Rep5	1	500.7614440917969	2	500.758549	999.502546	2.7882	0.0013962	3.5567	0.0017811	6.3449	0.0031773	500.7601563945679	99.12	0.5668	99.12	98.838	99.405	0					33	13	3	0	0	0	0.48084	1	10956	10956		79.451	4.9344	1	4508200	+		65468	19325	53954	54006	72085	72085					0.002774810348682877
YTRKAKRR	8	Unmodified	_YTRKAKRR_					0	0	0			REV__ENSG00000171988|ENST00000399262|JMJD1C	REV__ENSG00000171988|ENST00000399262|JMJD1C	MULTI-MSMS	OvCa9_classI_Rep2	2	539.8324584960938	2	539.833249	1077.65194	-3.7174	-0.0020067	1.8285	0.00098706	-1.8889	-0.0010197	539.83416939196	149.54	1.4287	149.32	148.92	150.35	-0.22697					60	28	3	0	0	0	0.75915	1	15192	15192		20.482	0	1	108190	+		65469	21665	53955	54007	72086	72086					0.1162247116810704
YTRPTPVQK	9	Unmodified	_YTRPTPVQK_					0	0	0		ENST00000463199.1_1_Y:15025644-15026909:+|nuORF;ENST00000472510.5_1_Y:15024878-15026576:+|nuORF;nc|ENSG00000067048|O15523-3|DDX3Y;ENST00000542215.5_1_X:41193845-41203505:+|nuORF;nc|ENSG00000215301|O00571-2|DDX3X;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X	ENST00000463199.1_1_Y:15025644-15026909:+|nuORF	ENST00000463199.1_1_Y:15025644-15026909:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	545.3065795898438	2	545.306198	1088.59784	-1.3311	-0.00072584	0.91355	0.00049817	-0.41751	-0.00022767	545.3065917023431	38.797	1.0385	36.087	35.865	36.904	-2.7097					40	20	3	0	0	0	0.57283	1	1849	1849		35.152	6.0025	1	204170			65470	1363	53956	54008	72087	72087					0.057088342259021374
YTRPTPVQK	9	Unmodified	_YTRPTPVQK_					0	0	0		ENST00000463199.1_1_Y:15025644-15026909:+|nuORF;ENST00000472510.5_1_Y:15024878-15026576:+|nuORF;nc|ENSG00000067048|O15523-3|DDX3Y;ENST00000542215.5_1_X:41193845-41203505:+|nuORF;nc|ENSG00000215301|O00571-2|DDX3X;nc|ENSG00000067048|O15523-2|DDX3Y;ENSG00000067048|ENST00000336079|DDX3Y;ENSG00000215301|ENST00000644876|DDX3X	ENST00000463199.1_1_Y:15025644-15026909:+|nuORF	ENST00000463199.1_1_Y:15025644-15026909:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	545.3065185546875	2	545.306198	1088.59784	-0.29732	-0.00016213	-0.20095	-0.00010958	-0.49826	-0.00027171	545.3060086727559	38.801	1.3391	35.875	35.552	36.891	-2.9264					66	26	4	0	0	0	0.22621	2	1544	1533;1544		71.877	11.759	1	347080			65471	1363	53956	54008	72088;72089	72089					0.057088342259021374
YTSPVNPAV	9	Unmodified	_YTSPVNPAV_					0	0	0		ENSG00000134825|ENST00000537328|TMEM258	ENSG00000134825|ENST00000537328|TMEM258	ENSG00000134825|ENST00000537328|TMEM258	MULTI-MSMS	OvCa99_classI_Rep5	1	474.24658203125	2	474.245275	946.475997	2.5921	0.0012293	-0.22053	-0.00010459	2.3716	0.0011247	474.2450000459961	84.47	0.45252	84.47	84.22	84.672	0					24	10	3	0	0	0	0.21231	1	8822	8822		74.255	0.28031	1	1092700			65472	4335	53957	54009	72090	72090					0.0006179214352641793
YTSSVNRL	8	Unmodified	_YTSSVNRL_					0	0	0		COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant;nc|ENSG00000184432|P35606-2|COPB2;ENSG00000184432|ENST00000333188|COPB2	COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant	COPB2|p.T792Rfs*3|1|0.4|ENSG00000184432|chr3:139359106-139359107|TG/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	470.2496337890625	2	470.248349	938.482145	-0.096006	-4.5146E-05	0.1711	8.0459E-05	0.075094	3.5313E-05	470.2483318987036	51.068	1.0172	51.068	50.73	51.747	0					35	23	3	0	0	0	0.29515	1	3920	3920		108.09	47.794	1	1078200			65473	669	53958	54010	72091	72091					0.01044310375061741
YTSVRLFNDV	10	Unmodified	_YTSVRLFNDV_					0	0	0		tr|A0A553SU15|A0A553SU15_NIACITransportpermeaseproteinOS=NialliacirculansOX=1397GN=CEQ21_06050PE=3SV=1	tr|A0A553SU15|A0A553SU15_NIACITransportpermeaseproteinOS=NialliacirculansOX=1397GN=CEQ21_06050PE=3SV=1	tr|A0A553SU15|A0A553SU15_NIACITransportpermeaseproteinOS=NialliacirculansOX=1397GN=CEQ21_06050PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	607.3142700195312	2	607.31422	1212.61389	-0.66897	-0.00040628	0.41703	0.00025327	-0.25194	-0.00015301	607.3143684506753	105.84	1.7433	105.4	104.95	106.69	-0.43642					110	34	4	0	0	0	0.5675	1	9887	9887		45.972	6.7194	1	513880			65474	34562	53959	54011	72092	72092					0.01608495672121535
YTTDRVMTV	9	Oxidation (M)	_YTTDRVM(Oxidation (M))TV_		YTTDRVM(1)TV		YTTDRVM(110)TV	0	0	1		ENSG00000116478|ENST00000373548|HDAC1;ENST00000523334.1_1_6:114270238-114277280:-|nuORF;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	551.2677612304688	2	551.265881	1100.51721	0.048981	2.7001E-05	0.14316	7.8919E-05	0.19214	0.00010592	551.2656631637041	57.23	1.4736	53.885	53.425	54.899	-3.3449					87	28	4	0	0	0	0.056671	4	3695	3683;3695;3705;3719		114.89	29.734	1	436070			65475	3180;8632	53960	54012	72093;72094;72095;72096	72094		102			-0.029028148793031505
YTTDRVMTV	9	Oxidation (M)	_YTTDRVM(Oxidation (M))TV_					0	0	1		ENSG00000116478|ENST00000373548|HDAC1;ENST00000523334.1_1_6:114270238-114277280:-|nuORF;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	551.265881	1100.51721	-0.16347	-9.0113E-05	-0.18044	-9.9468E-05	-0.3439	-0.00018958	551.2654699816152	56.75	1.0408	53.946	53.572	54.613	-2.804	0.03068	-0.00016983	NaN	114.89	52	20	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	66646			65476	3180;8632	53960	54012				102			-0.029028148793031505
YTTDRVMTV	9	Unmodified	_YTTDRVMTV_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000523334.1_1_6:114270238-114277280:-|nuORF;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MSMS	OvCa9_classI_Rep4_	4	543.2693481445312	2	543.268424	1084.5223	-1.8168	-0.00098701	1.2851	0.00069817	-0.53168	-0.00028884	543.2691306852699	72.915	1.1127	69.519	69.253	70.366	-3.3961					39	22	2	0	0	0	0.1804	1	5633	5633		79.713	16.406	1	492970			65477	3180;8632	53960	54013	72097	72097					-0.016585110166943196
YTTDRVMTV	9	Unmodified	_YTTDRVMTV_					0	0	0		ENSG00000116478|ENST00000373548|HDAC1;ENST00000523334.1_1_6:114270238-114277280:-|nuORF;ENSG00000196591|ENST00000519065|HDAC2;nc|ENSG00000196591|Q92769-3|HDAC2	ENSG00000116478|ENST00000373548|HDAC1;ENSG00000196591|ENST00000519065|HDAC2	ENSG00000196591|ENST00000519065|HDAC2	MULTI-MATCH	OvCa9_classI_Rep2	2		2	543.268424	1084.5223	-0.075108	-4.0804E-05	0.028156	1.5296E-05	-0.046952	-2.5507E-05	543.2685005087601	71.949	1.1497	69.442	68.963	70.112	-2.5072	-0.038394	-0.00080116	NaN	79.713	42	21	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	94379			65478	3180;8632	53960	54013							-0.016585110166943196
YTTHPKPII	9	Unmodified	_YTTHPKPII_					0	0	0		ENSG00000162620|ENST00000354431|LRRIQ3	ENSG00000162620|ENST00000354431|LRRIQ3	ENSG00000162620|ENST00000354431|LRRIQ3	MULTI-MSMS	OvCa99_classI_Rep5	1	535.3077392578125	2	535.305667	1068.59678	2.0884	0.0011179	-0.35082	-0.00018779	1.7376	0.00093014	535.3054063021825	108.47	1.0374	108.47	108.16	109.19	0					72	23	5	0	0	0	0.28934	1	12251	12251		64.207	10.856	1	8228100			65479	6205	53961	54014	72098	72098					0.06522619856991696
YTTIIAGI	8	Unmodified	_YTTIIAGI_					0	0	0			REV__tr|A0A553SJ16|A0A553SJ16_NIACIPhosphatidylglycerol--prolipoproteindiacylglyceryltransferaseOS=NialliacirculansOX=1397GN=lgtPE=3SV=1	REV__tr|A0A553SJ16|A0A553SJ16_NIACIPhosphatidylglycerol--prolipoproteindiacylglyceryltransferaseOS=NialliacirculansOX=1397GN=lgtPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	426.24566650390625	2	426.247286	850.48002	-0.93249	-0.00039747	-2.0488	-0.0008733	-2.9813	-0.0012708	426.2463036759244	138.33	1.7168	138.1	137.59	139.3	-0.22696					83	34	3	0	0	0	0.75991	1	13773	13773		21.702	0	1	161940	+		65480	29956	53962	54015	72099	72099					0.04879881637236849
YTTKLSKYFLF	11	Unmodified	_YTTKLSKYFLF_					0	0	0			REV__tr|A0A7D6ZRV7|A0A7D6ZRV7_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13650PE=4SV=1	REV__tr|A0A7D6ZRV7|A0A7D6ZRV7_9CLOTABCtransporterpermeaseOS=ClostridiumintestinaleOX=36845GN=HZF06_13650PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep2	2	470.7881164550781	3	470.927106	1409.75949	0.75024	0.00035331	-0.54404	-0.0002562	0.2062	9.7107E-05	471.2612694416844	41.583	0.44316	38.873	38.635	39.078	-2.7097					11	8	2	0	0	0	0.026221	1	2154	2154		9.6461	6.6202	1	74119	+		65481	32168	53963	54016	72100	72100					0.07099958468302248
YTTRISLTT	9	Unmodified	_YTTRISLTT_					0	0	0		ENSG00000100348|ENST00000216185|TXN2	ENSG00000100348|ENST00000216185|TXN2	ENSG00000100348|ENST00000216185|TXN2	MULTI-SECPEP	OvCa9_classI_Rep4_	4	527.8170166015625	2	528.290214	1054.56587	3.0473	0.0016099	-0.73181	-0.00038661	2.3155	0.0012233	528.7895214895302	132.71	0.29163	131.21	131.05	131.34	-1.5014					7	5	2	0	0	0	0.027462	1	12798	12798		21.96	3.6355	1	4273.6			65482	2053	53964	54017	72101	72101					0.040774217520947786
YTTSAMLQGVL	11	Unmodified	_YTTSAMLQGVL_					0	0	0		ENSG00000187775|ENST00000389840|DNAH17;DNAH17|p.K3074Sfs*10|1|0.27|ENSG00000187775|chr17:78461662-78461662|T/-|frameshift_variant;DNAH17|p.A3303Gfs*10|1|0.11|ENSG00000187775|chr17:78458634-78458635|-/ACACATCCACATCTGGCAC|frameshift_variant;ENST00000586052.5_1_17:76475094-76487566:-|nuORF	ENSG00000187775|ENST00000389840|DNAH17	ENSG00000187775|ENST00000389840|DNAH17	MULTI-SECPEP	OvCa99_classI_Rep5	1	592.261474609375	2	592.305007	1182.59546	2.1452	0.0012706	1.2408	0.0007349	3.3859	0.0020055	592.3058354003701	76.61	0.60278	76.61	76.238	76.841	0					19	14	2	0	0	0	0.024982	1	7681	7681		65.465	8.7443	1	345740			65483	8432	53965	54018	72102	72102					0.011466177059219262
YTTVRALTRH	10	Unmodified	_YTTVRALTRH_					0	0	0		ENSG00000109079|ENST00000226225|TNFAIP1	ENSG00000109079|ENST00000226225|TNFAIP1	ENSG00000109079|ENST00000226225|TNFAIP1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	407.2381286621094	3	406.563161	1216.66765	2.2354	0.00090883	0.12148	4.9389E-05	2.3569	0.00095822	406.56334367411137	35.424	0.59967	32.575	32.24	32.839	-2.849					17	11	2	0	0	0	0.027465	1	1103	1103		12.812	0	1	17899			65484	2695	53966	54019	72103	72103					0.06798712894487835
YTVILSFILIG	11	Unmodified	_YTVILSFILIG_					0	0	0			REV__nc|ENSG00000162736|Q92542-2|NCSTN	REV__nc|ENSG00000162736|Q92542-2|NCSTN	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8695068359375	2	619.873382	1237.73221	-3.6059	-0.0022352	-2.8194	-0.0017477	-6.4253	-0.0039829	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.68684	1	12821	12821		34.173	3.6689	1	664560	+		65485	20773	53967	54020	72104	72104					0.12285474927966789
YTVKVEDLT	9	Unmodified	_YTVKVEDLT_					0	0	0		nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000530361.5_1_19:50188842-50191499:+|nuORF	nc|ENSG00000126457|Q99873-2|PRMT1	nc|ENSG00000126457|Q99873-2|PRMT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	534.2843017578125	2	534.284597	1066.55464	-1.2512	-0.00066849	0.045339	2.4224E-05	-1.2059	-0.00064427	534.2847652774342	143.71	1.0923	142.26	141.89	142.98	-1.4427					46	20	3	0	0	0	0.65371	1	14094	14094		25.574	1.3713	1	84175			65486	3781	53968	54021	72105	72105					0.02402599657943938
YTVPVFKALL	10	Unmodified	_YTVPVFKALL_					0	0	0			REV__tr|A0A553SFQ4|A0A553SFQ4_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09330PE=4SV=1	REV__tr|A0A553SFQ4|A0A553SFQ4_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09330PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8427124023438	2	575.847167	1149.67978	-2.8608	-0.0016474	-4.0802	-0.0023496	-6.941	-0.0039969	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.58282	1	14540	14540		44.117	8.4985	1	356230	+		65487	29606	53969	54022	72106	72106					0.11092936585009738
YTVSIKSSKLL	11	Unmodified	_YTVSIKSSKLL_					0	0	0		nc|ENSG00000197121|Q75T13-2|PGAP1;ENSG00000197121|ENST00000354764|PGAP1	nc|ENSG00000197121|Q75T13-2|PGAP1	nc|ENSG00000197121|Q75T13-2|PGAP1	MULTI-MSMS	OvCa9_classI_Rep3	3	619.86962890625	2	619.871371	1237.72819	-3.6059	-0.0022352	0.4254	0.00026369	-3.1805	-0.0019715	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.70761	1	12773	12773		27.047	0.3544	1	664560			65488	8679	53970	54023	72107	72107					0.11883385434248339
YTVTEIYDFR	10	Unmodified	_YTVTEIYDFR_					0	0	0			REV__ENSG00000081479|ENST00000649046|LRP2	REV__ENSG00000081479|ENST00000649046|LRP2	MULTI-SECPEP	OvCa9_classI_Rep3	3	436.2618103027344	3	436.215316	1305.62412	1.7158	0.00074844	3.5548	0.0015507	5.2705	0.0022991	436.21733149726003	64.464	0.20114	61.471	61.395	61.596	-2.9933					5	3	2	0	0	0	0.027062	1	2513	2513		32.751	0	1	8414.3	+		65489	17073	53971	54024	72108	72108					-0.016469413932782118
YTWALIRALL	10	Unmodified	_YTWALIRALL_					0	0	0			REV__ENSG00000186204|ENST00000550308|CYP4F12;REV__ENSG00000186526|ENST00000612078|CYP4F8;REV__ENSG00000186529|ENST00000221307|CYP4F3	REV__ENSG00000186204|ENST00000550308|CYP4F12	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.23187255859375	3	407.24477	1218.71248	0.58949	0.00024007	-1.2955	-0.00052758	-0.706	-0.00028752	407.57818592615814	66.35	0.12466	66.35	66.288	66.412	0					4	2	2	0	0	0	0.027142	1	6139	6139		15.333	0	1	62788	+		65490	22567;22597;22598	53972	54025	72109	72109					0.11187143707866198
YTWLLTKQFTE	11	Unmodified	_YTWLLTKQFTE_					0	0	0		ENST00000506880.5_3_4:157684244-157699382:-|nuORF	ENST00000506880.5_3_4:157684244-157699382:-|nuORF	ENST00000506880.5_3_4:157684244-157699382:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	477.8066711425781	3	477.250249	1428.72892	-1.1943	-0.00056999	2.9115	0.0013895	1.7172	0.00081954	477.25132514532874	67.682	0.59115	65.021	64.842	65.433	-2.661					17	11	2	0	0	0	0.026058	1	5317	5317		18.966	0	1	18498			65491	12918	53973	54026	72110	72110					0.03170180083247942
YTWWGPID	8	Unmodified	_YTWWGPID_					0	0	0		tr|A0A553SSR9|A0A553SSR9_NIACIGlycosylhydrolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_03495PE=3SV=1	tr|A0A553SSR9|A0A553SSR9_NIACIGlycosylhydrolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_03495PE=3SV=1	tr|A0A553SSR9|A0A553SSR9_NIACIGlycosylhydrolasefamilyproteinOS=NialliacirculansOX=1397GN=CEQ21_03495PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	518.8284912109375	2	519.239993	1036.46543	-0.45281	-0.00023512	1.2175	0.00063219	0.76473	0.00039708	519.2395585427411	123.6	0.3959	122.23	122	122.4	-1.3666					10	7	2	0	0	0	0.028476	1	11672	11672		19.36	0	1	11259			65492	34409	53974	54027	72111	72111					-0.051341905108984065
YTYESPAGY	9	Unmodified	_YTYESPAGY_					0	0	0		ENSG00000167619|ENST00000301204|TMEM145	ENSG00000167619|ENST00000301204|TMEM145	ENSG00000167619|ENST00000301204|TMEM145	MULTI-SECPEP	OvCa9_classI_Rep4_	4	525.784423828125	2	525.724372	1049.43419	-0.71803	-0.00037749	2.2792	0.0011982	1.5612	0.00082074	525.724223793432	102.76	0.2625	100.56	100.46	100.73	-2.1994					6	4	2	0	0	0	0.027462	1	9261	9261		25.45	0.94616	1	7076.4			65493	6816	53975	54028	72112	72112					-0.08854808335672715
YTYKLENL	8	Unmodified	_YTYKLENL_					0	0	0		L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|120|2|sense	L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|120|2|sense	L1PA3_dup6385|chrX:56129154-56135710:+|1.3158136929043118|0.1454864550760078|3.18|429.0|120|2|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	522.7737426757812	2	522.274032	1042.53351	1.6025	0.00083694	-1.8829	-0.00098341	-0.28045	-0.00014647	522.7732368831157	92.865	0.83184	92.865	92.515	93.346	0					39	19	3	0	0	0	0.6345	1	10057	10057		56.721	5.3856	1	1008100			65494	14688	53976	54029	72113	72113					0.013946343490943036
YTYKMVLS	8	Unmodified	_YTYKMVLS_					0	0	0			REV__ENST00000382004.7_1_9:3221866-3221968:-|nuORF	REV__ENST00000382004.7_1_9:3221866-3221968:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	502.8031921386719	2	502.759704	1003.50485	-0.66121	-0.00033243	-4.218	-0.0021207	-4.8793	-0.0024531	502.7575372717656	58.743	0.95319	55.351	54.701	55.655	-3.392					29	18	2	0	0	0	0.028476	1	3903	3903		53.351	14.545	1	25476	+		65495	25209	53977	54030	72114	72114					0.003241934483071418
YTYTSKAL	8	Unmodified	_YTYTSKAL_					0	0	0		ENST00000487643.1_1_3:183240843-183262455:-|nuORF;ENST00000489245.5_1_3:183211997-183273441:-|nuORF;ENSG00000172578|ENST00000341319|KLHL6	ENST00000487643.1_1_3:183240843-183262455:-|nuORF	ENST00000487643.1_1_3:183240843-183262455:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	473.7485656738281	2	473.74765	945.480748	-0.63358	-0.00030016	0.72112	0.00034163	0.087537	4.147E-05	473.74781609519954	59.465	0.72898	59.465	59.228	59.957	0					47	18	4	0	0	0	0.13946	1	5136	5136		134.81	81.459	1	2640700			65496	12652	53978	54031	72115	72115					0.0058267628628527746
YVAAFAISAY	10	Unmodified	_YVAAFAISAY_					0	0	0		nc|ENSG00000070882|Q9H4L5-2|OSBPL3;ENSG00000070882|ENST00000313367|OSBPL3;nc|ENSG00000070882|Q9H4L5-4|OSBPL3;nc|ENSG00000070882|Q9H4L5-3|OSBPL3;ENST00000409863.5_1_7:24839804-24873723:-|nuORF	nc|ENSG00000070882|Q9H4L5-2|OSBPL3	nc|ENSG00000070882|Q9H4L5-2|OSBPL3	MULTI-SECPEP	OvCa9_classI_Rep3	3	538.8630981445312	2	538.276575	1074.5386	-0.3556	-0.00019141	3.1979	0.0017214	2.8423	0.00153	538.2782178694588	137.41	0.62712	136.32	136.15	136.78	-1.0858					20	12	3	0	0	0	0.026939	1	11205	11205		40.573	0	1	17984			65497	1439	53979	54032	72116	72116					0.004309382116844063
YVAIRLVAL	9	Unmodified	_YVAIRLVAL_					0	0	0			REV__nc|ENSG00000101333|Q15147-2|PLCB4	REV__nc|ENSG00000101333|Q15147-2|PLCB4	MULTI-MSMS	OvCa99_classI_Rep5	1	509.3275451660156	2	509.326402	1016.63825	1.8391	0.00093671	-0.4333	-0.00022069	1.4058	0.00071602	509.32613202826394	129.35	0.47212	129.35	129.07	129.54	0					16	9	2	0	0	0	0.44294	1	15020	15020		47.916	1.9636	1	157880	+		65498	17490	53980	54033	72117	72117					0.13059800616315442
YVASLHLPS	9	Unmodified	_YVASLHLPS_					0	0	0		nc|ENSG00000168710|O43865-2|AHCYL1;ENSG00000168710|ENST00000369799|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	nc|ENSG00000168710|O43865-2|AHCYL1	MULTI-MSMS	OvCa99_classI_Rep5	1	493.76837158203125	2	493.768917	985.523281	1.9088	0.00094249	0.98408	0.00048591	2.8928	0.0014284	493.76896039283315	100.22	0.66936	100.22	99.939	100.61	0					22	15	2	0	0	0	0.11171	1	11095	11095		94.006	6.31	1	3078400			65499	6935	53981	54034	72118	72118					0.029940714145254788
YVAVFLLGLIL	11	Unmodified	_YVAVFLLGLIL_					0	0	0			REV__ENST00000591001.5_1_19:19381109-19384051:-|nuORF	REV__ENST00000591001.5_1_19:19381109-19384051:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	407.2497253417969	3	407.593287	1219.75803	0.67189	0.00027386	-1.7129	-0.00069817	-1.041	-0.00042431	407.5925099007529	39.384	0.17595	39.384	39.287	39.463	0					5	3	2	0	0	0	0.025652	1	2302	2302		15.333	0	1	14683	+		65500	23279	53982	54035	72119	72119					0.15694369170250866
YVCLFCGKNGL	11	Unmodified	_YVCLFCGKNGL_					0	0	0		XPO1-USP34|2|fusion;USP34|p.K3306Nfs*3|1|0.18|ENSG00000115464|chr2:61189025-61189025|T/-|frameshift_variant;nc|ENSG00000115464|Q70CQ2-3|USP34;nc|ENSG00000115464|Q70CQ2-2|USP34;ENSG00000115464|ENST00000398571|USP34	XPO1-USP34|2|fusion	XPO1-USP34|2|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	609.2989501953125	2	608.796294	1215.57804	1.1014	0.00067054	-3.8593	-0.0023495	-2.7579	-0.001679	608.7936363998955	157.54	2.009	157.54	156.55	158.56	0					101	40	3	0	0	0	0.62497	1	18494	18494		42.396	4.5846	1	160130			65501	36309	53983	54036	72120	72120					-0.02113001100724432
YVDDTQFVRF	10	Unmodified	_YVDDTQFVRF_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E;ENST00000484194.1_1_6:30457308-30457777:+|nuORF;ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;nc|ENSG00000204632|P17693-7|HLA-G;ENST00000487245.5_1_6:31239370-31239763:-|nuORF;nc|ENSG00000204632|P17693-3|HLA-G;nc|ENSG00000204632|P17693-6|HLA-G;nc|ENSG00000204632|P17693-2|HLA-G;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000484378.1_1_6:31239370-31239848:-|nuORF;nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	ENSG00000204592|ENST00000376630|HLA-E;ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204632|P17693-4|HLA-G;ENSG00000206503|ENST00000376809|HLA-A	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MSMS	OvCa99_classI_Rep5	1	645.3134765625	2	645.311677	1288.6088	2.4377	0.001573	-0.17129	-0.00011054	2.2664	0.0014625	645.3113534665418	107.42	0.71449	107.42	107.14	107.86	0					45	16	4	0	0	0	0.022034	1	12116	12116		145.46	74.644	1	2762800			65502	9301;9098;9006;8996;9014;12432	53984	54037	72121	72121					-0.023958081904993378
YVDDTQFVRF	10	Unmodified	_YVDDTQFVRF_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E;ENST00000484194.1_1_6:30457308-30457777:+|nuORF;ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;nc|ENSG00000204632|P17693-7|HLA-G;ENST00000487245.5_1_6:31239370-31239763:-|nuORF;nc|ENSG00000204632|P17693-3|HLA-G;nc|ENSG00000204632|P17693-6|HLA-G;nc|ENSG00000204632|P17693-2|HLA-G;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000484378.1_1_6:31239370-31239848:-|nuORF;nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	ENSG00000204592|ENST00000376630|HLA-E;ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204632|P17693-4|HLA-G;ENSG00000206503|ENST00000376809|HLA-A	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MATCH	OvCa9_classI_Rep2	2		2	645.311677	1288.6088	-0.81765	-0.00052764	1.0649	0.00068721	0.24728	0.00015957	645.3123540202653	107.69	0.6267	107.38	107.17	107.79	-0.30836	0.049928	0.0013265	NaN	145.46	20	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20918			65503	9301;9098;9006;8996;9014;12432	53984	54037							-0.023958081904993378
YVDDTQFVRF	10	Unmodified	_YVDDTQFVRF_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E;ENST00000484194.1_1_6:30457308-30457777:+|nuORF;ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;nc|ENSG00000204632|P17693-7|HLA-G;ENST00000487245.5_1_6:31239370-31239763:-|nuORF;nc|ENSG00000204632|P17693-3|HLA-G;nc|ENSG00000204632|P17693-6|HLA-G;nc|ENSG00000204632|P17693-2|HLA-G;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000484378.1_1_6:31239370-31239848:-|nuORF;nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	ENSG00000204592|ENST00000376630|HLA-E;ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204632|P17693-4|HLA-G;ENSG00000206503|ENST00000376809|HLA-A	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MATCH	OvCa9_classI_Rep3	3		2	645.311677	1288.6088	-0.13131	-8.4738E-05	0.44397	0.0002865	0.31266	0.00020176	645.3119188614465	108.44	0.65808	107.24	106.96	107.61	-1.1978	-0.086025	0.00052505	NaN	145.46	17	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28901			65504	9301;9098;9006;8996;9014;12432	53984	54037							-0.023958081904993378
YVDDTQFVRF	10	Unmodified	_YVDDTQFVRF_					0	0	0		ENSG00000204592|ENST00000376630|HLA-E;ENST00000484194.1_1_6:30457308-30457777:+|nuORF;ENSG00000234745|ENST00000412585|HLA-B;ENST00000498007.1_1_6:31324459-31324935:-|nuORF;nc|ENSG00000204632|P17693-7|HLA-G;ENST00000487245.5_1_6:31239370-31239763:-|nuORF;nc|ENSG00000204632|P17693-3|HLA-G;nc|ENSG00000204632|P17693-6|HLA-G;nc|ENSG00000204632|P17693-2|HLA-G;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;ENSG00000204525|ENST00000376228|HLA-C;ENST00000484378.1_1_6:31239370-31239848:-|nuORF;nc|ENSG00000204632|P17693-4|HLA-G;nc|ENSG00000204632|P17693-5|HLA-G;ENSG00000204632|ENST00000360323|HLA-G;ENSG00000206503|ENST00000376809|HLA-A;nc|ENSG00000206503|P04439-2|HLA-A;ENST00000495183.5_1_6:29910330-29910808:+|nuORF;nc|ENSG00000206341|P01893|HLA-H	ENSG00000204592|ENST00000376630|HLA-E;ENSG00000234745|ENST00000412585|HLA-B;ENST00000474381.1_1_6:31323854-31324663:-|nuORF;nc|ENSG00000204525|P10321-2|HLA-C;nc|ENSG00000204632|P17693-4|HLA-G;ENSG00000206503|ENST00000376809|HLA-A	ENSG00000234745|ENST00000412585|HLA-B	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	645.311677	1288.6088	-0.52299	-0.00033749	0.44419	0.00028664	-0.078801	-5.0851E-05	645.3117768154935	109	0.60649	107.27	107.02	107.63	-1.7256	-0.055786	0.00052534	NaN	145.46	18	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	28720			65505	9301;9098;9006;8996;9014;12432	53984	54037							-0.023958081904993378
YVDPDKFTL	9	Unmodified	_YVDPDKFTL_					0	0	0			REV__ENSG00000115526|ENST00000264249|CHST10	REV__ENSG00000115526|ENST00000264249|CHST10	MULTI-MSMS	OvCa9_classI_Rep4_	4	549.280517578125	2	549.279315	1096.54408	-0.15244	-8.3735E-05	-0.75308	-0.00041365	-0.90552	-0.00049738	549.2787548520594	116.17	1.1712	114.8	114.55	115.72	-1.3645					48	22	3	0	0	0	0.33652	1	10860	10860		58.782	7.4465	1	74912	+		65506	18251	53985	54038	72122	72122					-0.0003338299648021348
YVDPDKFTL	9	Unmodified	_YVDPDKFTL_					0	0	0			REV__ENSG00000115526|ENST00000264249|CHST10	REV__ENSG00000115526|ENST00000264249|CHST10	MULTI-MATCH	OvCa9_classI_Rep2	2		2	549.279315	1096.54408	-0.018101	-9.9428E-06	-0.3664	-0.00020125	-0.3845	-0.0002112	549.279042050211	115	1.2353	114.88	114.65	115.89	-0.11777	0.034204	-0.0001597	NaN	58.782	47	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	73598	+		65507	18251	53985	54038							-0.0003338299648021348
YVDPDKFTL	9	Unmodified	_YVDPDKFTL_					0	0	0			REV__ENSG00000115526|ENST00000264249|CHST10	REV__ENSG00000115526|ENST00000264249|CHST10	MULTI-MATCH	OvCa9_classI_Rep3	3		2	549.279315	1096.54408	-0.98454	-0.00054079	0.31207	0.00017141	-0.67248	-0.00036938	549.2793641178855	115.9	0.93761	114.86	114.6	115.54	-1.0414	0.01058	0.00058563	NaN	58.782	38	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	68078	+		65508	18251	53985	54038							-0.0003338299648021348
YVDPVNKVL	9	Unmodified	_YVDPVNKVL_					0	0	0		nc|ENSG00000140992|O15530-4|PDPK1;nc|ENSG00000140992|O15530-2|PDPK1;nc|ENSG00000140992|O15530-3|PDPK1;ENSG00000140992|ENST00000342085|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	nc|ENSG00000140992|O15530-4|PDPK1	MULTI-MSMS	OvCa99_classI_Rep5	1	523.7992553710938	2	523.797675	1045.5808	1.9844	0.0010394	0.36482	0.00019109	2.3492	0.0012305	523.7977701062764	88.944	1.0859	88.944	88.677	89.763	0					70	26	5	0	0	0	0.083631	2	9484	9457;9484		101.6	27.346	1	14845000			65509	4888	53986	54039	72123;72124	72124					0.059829136200733046
YVDSLKSPI	9	Unmodified	_YVDSLKSPI_					0	0	0		tr|A0A553SHM3|A0A553SHM3_NIACIRibosomalRNAsmallsubunitmethyltransferaseGOS=NialliacirculansOX=1397GN=rsmGPE=3SV=1	tr|A0A553SHM3|A0A553SHM3_NIACIRibosomalRNAsmallsubunitmethyltransferaseGOS=NialliacirculansOX=1397GN=rsmGPE=3SV=1	tr|A0A553SHM3|A0A553SHM3_NIACIRibosomalRNAsmallsubunitmethyltransferaseGOS=NialliacirculansOX=1397GN=rsmGPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	510.3168640136719	2	511.281857	1020.54916	1.2044	0.00061579	0.29173	0.00014916	1.4961	0.00076494	511.2816050741929	131.23	0.84929	131.23	130.87	131.72	0					31	17	3	0	0	0	0.027462	1	15197	15197		24.203	0	1	121300			65510	33286	53987	54040	72125	72125					0.039709208661292905
YVEEDVSIK	9	Unmodified	_YVEEDVSIK_					0	0	0		nc|ENSG00000126804|Q9Y2K1-2|ZBTB1;ENSG00000126804|ENST00000683701|ZBTB1	nc|ENSG00000126804|Q9Y2K1-2|ZBTB1	nc|ENSG00000126804|Q9Y2K1-2|ZBTB1	MULTI-SECPEP	OvCa99_classI_Rep5	1	541.2938842773438	2	541.274229	1080.53391	1.1601	0.00062792	1.0865	0.00058811	2.2466	0.001216	541.2748996954822	98.305	0.3402	98.305	98.121	98.461	0					12	7	3	0	0	0	0.027462	1	10840	10840		53.351	22.848	1	1182900			65511	3801	53988	54041	72126	72126					-0.0031399072172462184
YVEKVERL	8	Unmodified	_YVEKVERL_					0	0	0		nc|ENSG00000114019|Q9Y2J4-3|AMOTL2;nc|ENSG00000114019|Q9Y2J4|AMOTL2;ENSG00000114019|ENST00000249883|AMOTL2;nc|ENSG00000114019|Q9Y2J4-4|AMOTL2;ENST00000506326.1_1_3:134076549-134085275:-|nuORF	nc|ENSG00000114019|Q9Y2J4-3|AMOTL2	nc|ENSG00000114019|Q9Y2J4-3|AMOTL2	MULTI-MSMS	OvCa99_classI_Rep5	1	518.2970581054688	2	518.295299	1034.57605	-0.8022	-0.00041577	0.44023	0.00022817	-0.36197	-0.00018761	518.2953538981981	60.015	1.4551	60.015	59.573	61.028	0					105	35	5	0	0	0	0.37384	1	5172	5172		93.143	21.848	1	11366000			65512	3006	53989	54042	72127	72127					0.060140294773418645
YVELYSIGL	9	Unmodified	_YVELYSIGL_					0	0	0			REV__ENST00000216416.8_1_14:54897113-54898903:-|nuORF	REV__ENST00000216416.8_1_14:54897113-54898903:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	528.8319091796875	2	528.784233	1055.55391	-1.2346	-0.00065286	0.64737	0.00034232	-0.58727	-0.00031054	528.7827990904291	83.567	1.313	81.306	80.614	81.927	-2.261					62	27	4	0	0	0	0.02741	1	4820	4820		60.972	0.56831	1	109780	+		65513	23724	53990	54043	72128	72128					0.0283580500890821
YVETDENCE	9	Unmodified	_YVETDENCE_					0	0	0			REV__nc|ENSG00000141441|Q9H706-2|GAREM1	REV__nc|ENSG00000141441|Q9H706-2|GAREM1	MULTI-SECPEP	OvCa99_classI_Rep5	1	550.2930908203125	2	551.205686	1100.39682	-0.94493	-0.00052085	3.8603	0.0021278	2.9154	0.001607	551.2077509910873	59.54	0.34896	59.54	59.377	59.726	0					15	8	2	0	0	0	0.027462	1	5124	5124		27.882	0	1	380400	+		65514	19737	53991	54044	72129	72129					-0.1493626766359739
YVETGTKLE	9	Unmodified	_YVETGTKLE_					0	0	0			REV__tr|A0A553SK60|A0A553SK60_NIACIDUF4288domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18035PE=4SV=1	REV__tr|A0A553SK60|A0A553SK60_NIACIDUF4288domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_18035PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	520.2699584960938	2	520.268947	1038.52334	2.5278	0.0013151	-0.52011	-0.0002706	2.0077	0.0010445	520.2685991434009	89.716	0.70838	89.716	89.435	90.143	0					66	16	6	0	0	0	0.38969	1	9631	9631		52.937	3.4952	1	18983000	+		65515	30082	53992	54045	72130	72130					0.005620266238793192
YVETPRPLI	9	Unmodified	_YVETPRPLI_					0	0	0			REV__tr|A0A7D6ZXM4|A0A7D6ZXM4_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_23560PE=3SV=1	REV__tr|A0A7D6ZXM4|A0A7D6ZXM4_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_23560PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	544.3123779296875	2	544.310949	1086.60735	1.128	0.00061397	1.8535	0.0010089	2.9815	0.0016228	544.3116949479449	124.58	0.78481	124.58	124.24	125.02	0					45	16	5	0	0	0	0.27001	1	14380	14380		66.429	2.222	1	420540	+		65516	32337	53993	54046	72131	72131					0.06750602511419856
YVETPRPLI	9	Unmodified	_YVETPRPLI_					0	0	0			REV__tr|A0A7D6ZXM4|A0A7D6ZXM4_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_23560PE=3SV=1	REV__tr|A0A7D6ZXM4|A0A7D6ZXM4_9CLOTABCtransporterpermeasesubunitOS=ClostridiumintestinaleOX=36845GN=HZF06_23560PE=3SV=1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	544.310949	1086.60735	1.128	0.00061397	1.8535	0.0010089	2.9815	0.0016228	544.3116949479449	124.58	0.78481	124.58	124.24	125.02	0	0	0	NaN	66.429	45	16	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	420540	+		65517	32337	53993	54046							0.06750602511419856
YVEVPDLGGP	10	Unmodified	_YVEVPDLGGP_					0	0	0			REV__ENSG00000105401|ENST00000222005|CDC37	REV__ENSG00000105401|ENST00000222005|CDC37	MULTI-SECPEP	OvCa99_classI_Rep5	1	523.7904663085938	2	523.263665	1044.51278	1.6475	0.00086208	-3.1344	-0.0016401	-1.4869	-0.00077805	523.2618695291732	83.931	0.8847	83.931	83.588	84.472	0					40	20	3	0	0	0	0.026802	1	8770	8770		42.396	19.354	1	2539700	+		65518	17723	53994	54047	72132	72132					-0.0076995603058094275
YVFCSLLY	8	Unmodified	_YVFCSLLY_					0	0	0		ENST00000502444.1_1_4:122782546-122791468:-|nuORF	ENST00000502444.1_1_4:122782546-122791468:-|nuORF	ENST00000502444.1_1_4:122782546-122791468:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	504.29840087890625	2	504.248972	1006.48339	-0.072615	-3.6616E-05	0.10879	5.4859E-05	0.036178	1.8243E-05	504.2490632270514	104.79	0.93525	103.44	103.16	104.09	-1.3482					28	17	2	0	0	0	0.028476	1	7304	7304		44.531	0	1	69637			65519	12849	53995	54048	72133	72133					-0.019591915804198834
YVFDPFTKR	9	Unmodified	_YVFDPFTKR_					0	0	0			REV__ENSG00000151640|ENST00000338492|DPYSL4	REV__ENSG00000151640|ENST00000338492|DPYSL4	MULTI-MSMS	OvCa9_classI_Rep3	3	586.8026733398438	2	586.808574	1171.60259	-8.2813	-0.0048596	-0.94955	-0.0005572	-9.2309	-0.0054168	586.8077830487384	159.82	3.6388	158.49	157.91	161.55	-1.3316					146	73	3	0	0	0	0.62352	1	13860	13860		29.15	0.89528	1	151840	+		65520	20244	53996	54049	72134	72134					0.02365718368673697
YVFDPFTKR	9	Unmodified	_YVFDPFTKR_					0	0	0			REV__ENSG00000151640|ENST00000338492|DPYSL4	REV__ENSG00000151640|ENST00000338492|DPYSL4	MULTI-MSMS	OvCa9_classI_Rep4_	4	586.8037719726562	2	586.808574	1171.60259	-6.8597	-0.0040253	-2.4887	-0.0014604	-9.3484	-0.0054857	586.8069299890403	160.36	3.1265	158.75	158.28	161.4	-1.61					144	76	3	0	0	0	0.6653	1	15836	15836		24.203	0	1	162470	+		65521	20244	53996	54049	72135	72135					0.02365718368673697
YVFGRTII	8	Unmodified	_YVFGRTII_					0	0	0			REV__tr|A0A553SNU9|A0A553SNU9_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	REV__tr|A0A553SNU9|A0A553SNU9_NIACIRibonucleaseJOS=NialliacirculansOX=1397GN=rnjPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	484.74859619140625	2	484.781828	967.549102	-0.84945	-0.0004118	-3.1243	-0.0015146	-3.9737	-0.0019264	484.78002422037883	28.265	0.59753	28.265	28.091	28.688	0					18	11	3	0	0	0	0.028476	1	931	931		9.4706	5.1543	1	140820	+		65522	30457	53997	54050	72136	72136					0.06402965656809556
YVFRQVGVS	9	Unmodified	_YVFRQVGVS_					0	0	0		tr|A0A7D6VT70|A0A7D6VT70_9CLOTC40familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15960PE=3SV=1	tr|A0A7D6VT70|A0A7D6VT70_9CLOTC40familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15960PE=3SV=1	tr|A0A7D6VT70|A0A7D6VT70_9CLOTC40familypeptidaseOS=ClostridiumintestinaleOX=36845GN=HZF06_15960PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.310302734375	2	527.787641	1053.56073	2.1409	0.00113	-1.0307	-0.000544	1.1102	0.00058596	527.7869912308703	95.859	0.4248	95.859	95.615	96.039	0					20	9	3	0	0	0	0.027462	1	10447	10447		21.96	4.4919	1	214990			65523	35092	53998	54051	72137	72137					0.03609162680140798
YVFTRLLLV	9	Unmodified	_YVFTRLLLV_					0	0	0			REV__chr22:23830348-23833572|141|26.55|0.34|6.29|+|2|TE_info:L1MB8,L1MB8_dup16234,L1,LINE,donor,-,23829659,23830348|None,SMARCB1|9	REV__chr22:23830348-23833572|141|26.55|0.34|6.29|+|2|TE_info:L1MB8,L1MB8_dup16234,L1,LINE,donor,-,23829659,23830348|None,SMARCB1|9	MULTI-MSMS	OvCa9_classI_Rep2	2	562.3427734375	2	562.347335	1122.68012	-4.5941	-0.0025835	-2.2339	-0.0012563	-6.828	-0.0038397	562.3457579287042	161.6	0.62779	161.38	161.04	161.67	-0.22697					24	12	3	0	0	0	0.69895	1	16454	16454		18.324	3.4595	1	29283	+		65524	16034	53999	54052	72138	72138					0.12368356304841654
YVGAHQPGV	9	Unmodified	_YVGAHQPGV_					0	0	0			REV__ENSG00000072195|ENST00000312358|SPEG	REV__ENSG00000072195|ENST00000312358|SPEG	MULTI-MSMS	OvCa99_classI_Rep5	1	464.2373962402344	2	464.237784	926.461016	-0.48053	-0.00022308	0.65154	0.00030247	0.17101	7.9388E-05	464.2379343140511	38.23	0.54867	38.23	37.983	38.531	0					25	11	3	0	0	0	0.58665	1	2165	2165		33.516	0	1	473090	+		65525	16913	54000	54053	72139	72139					-0.00515654933803944
YVGAHQPGV	9	Unmodified	_YVGAHQPGV_					0	0	0			REV__ENSG00000072195|ENST00000312358|SPEG	REV__ENSG00000072195|ENST00000312358|SPEG	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	464.237784	926.461016	-0.48053	-0.00022308	0.65154	0.00030247	0.17101	7.9388E-05	464.2379343140511	38.23	0.54867	38.23	37.983	38.531	0	0	0	NaN	33.516	25	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	473090	+		65526	16913	54000	54053							-0.00515654933803944
YVGIAVIWVL	10	Unmodified	_YVGIAVIWVL_					0	0	0		ENSG00000164128|ENST00000296533|NPY1R	ENSG00000164128|ENST00000296533|NPY1R	ENSG00000164128|ENST00000296533|NPY1R	MULTI-SECPEP	OvCa99_classI_Rep5	1	567.299560546875	2	566.841885	1131.66922	2.447	0.0013871	-3.7564	-0.0021293	-1.3093	-0.00074219	566.839646673751	107.35	0.58683	107.35	107.19	107.77	0					24	13	2	0	0	0	0.026839	1	12137	12137		44.531	8.9128	1	651630			65527	6418	54001	54054	72140	72140					0.10864953930536103
YVGQQVYGKN	10	Unmodified	_YVGQQVYGKN_					0	0	0			REV__ZMIZ2|p.L467Sfs*96|1|0.33|ENSG00000122515|chr7:44761707-44761708|-/T|frameshift_variant	REV__ZMIZ2|p.L467Sfs*96|1|0.33|ENSG00000122515|chr7:44761707-44761708|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep3	3	578.2890625	2	578.293288	1154.57202	-7.6654	-0.0044328	1.6458	0.00095178	-6.0195	-0.0034811	578.2940529397285	163.97	0.95636	162.57	161.7	162.66	-1.3925					62	21	3	0	0	0	0.65434	1	14253	14253		35.618	3.6634	1	144290	+		65528	18604	54002	54055	72141	72141					0.0009193998362206912
YVGQQVYGKN	10	Unmodified	_YVGQQVYGKN_					0	0	0			REV__ZMIZ2|p.L467Sfs*96|1|0.33|ENSG00000122515|chr7:44761707-44761708|-/T|frameshift_variant	REV__ZMIZ2|p.L467Sfs*96|1|0.33|ENSG00000122515|chr7:44761707-44761708|-/T|frameshift_variant	MULTI-MSMS	OvCa9_classI_Rep4_	4	578.2901000976562	2	578.293288	1154.57202	-6.4833	-0.0037493	-0.7736	-0.00044737	-7.2569	-0.0041966	578.2924756503293	159.15	2.0345	157.57	156.14	158.17	-1.5858					77	57	2	0	0	0	0.72319	1	15704	15704		27.882	0.83493	1	24594	+		65529	18604	54002	54055	72142	72142					0.0009193998362206912
YVGRLMVRL	9	Unmodified	_YVGRLMVRL_					0	0	0		nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	MULTI-MSMS	OvCa9_classI_Rep3	3	553.8289794921875	2	553.828786	1105.64302	-2.2198	-0.0012294	4.4848	0.0024838	2.2649	0.0012544	553.8311075714116	139.08	3.9663	138.02	135.98	139.95	-1.0595					202	80	4	0	0	0	0.59983	1	11365	11365		31.955	5.8915	1	74733			65530	1122	54003	54056	72143	72143					0.09442361487435846
YVGRLMVRL	9	Unmodified	_YVGRLMVRL_					0	0	0		nc|ENSG00000042286|Q9BRQ8-2|AIFM2;ENSG00000042286|ENST00000307864|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	nc|ENSG00000042286|Q9BRQ8-2|AIFM2	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.830322265625	2	553.828786	1105.64302	0.13278	7.3535E-05	2.4337	0.0013478	2.5664	0.0014214	553.8299869533143	142.68	4.7495	141.23	139.89	144.64	-1.4427					344	91	5	0	0	0	0.6653	1	14144	14144		24.203	1.1603	1	400120			65531	1122	54003	54056	72144	72144					0.09442361487435846
YVHMVTHF	8	Oxidation (M)	_YVHM(Oxidation (M))VTHF_		YVHM(1)VTHF		YVHM(66)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	OvCa99_classI_Rep5	1	525.2487182617188	2	525.247295	1048.48004	-0.03876	-2.0359E-05	-0.15288	-8.0301E-05	-0.19164	-0.00010066	525.2470600115737	58.001	0.7151	58.001	57.522	58.237	0					41	16	4	0	0	0	0.59103	1	4890	4890		65.897	28.086	1	6081900			65532	4793	54004	54057	72145	72145		154			-0.04226441634409639
YVHMVTHF	8	Oxidation (M)	_YVHM(Oxidation (M))VTHF_		YVHM(1)VTHF		YVHM(91)VTHF	0	0	1		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	OvCa99_classI_Rep5	1	525.249267578125	2	525.247295	1048.48004	-0.34167	-0.00017946	0.30773	0.00016163	-0.033948	-1.7831E-05	525.2472344389196	58.463	0.7789	58.463	58.153	58.932	0					59	18	5	0	0	0	0.38514	1	4972	4972		90.939	22.152	1	6516100			65533	4793	54004	54057	72146	72146		154			-0.04226441634409639
YVHMVTHF	8	Unmodified	_YVHMVTHF_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	OvCa99_classI_Rep5	1	517.251708984375	2	517.249837	1032.48512	-0.62883	-0.00032526	0.17508	9.0559E-05	-0.45375	-0.0002347	517.249822912114	68.529	0.91428	68.529	68.192	69.106	0					40	21	2	0	0	0	0.49583	1	6479	6479		77.944	12.141	1	4737000			65534	4793	54004	54058	72147	72147					-0.02982137771800808
YVHMVTHF	8	Unmodified	_YVHMVTHF_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MSMS	OvCa99_classI_Rep5	1	517.2510986328125	2	517.249837	1032.48512	2.2148	0.0011456	-0.35178	-0.00018196	1.863	0.00096363	517.24964003882	75.567	3.0022	75.567	75.292	78.294	0					213	73	5	0	0	0	0.038769	4	7510	7510;7540;7570;7600		175.34	105.71	1	72795000			65535	4793	54004	54058	72148;72149;72150;72151	72148					-0.02982137771800808
YVHMVTHF	8	Unmodified	_YVHMVTHF_					0	0	0		nc|ENSG00000139644|P55061-2|TMBIM6;ENSG00000139644|ENST00000267115|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	nc|ENSG00000139644|P55061-2|TMBIM6	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	517.249837	1032.48512	-1.2157	-0.00062882	1.4091	0.00072883	0.19336	0.00010001	517.2510231536387	71.655	0.24241	68.199	68.074	68.317	-3.4563	-0.16523	0.0012241	NaN	77.944	6	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14996			65536	4793	54004	54058							-0.02982137771800808
YVIAFLIVSLT	11	Unmodified	_YVIAFLIVSLT_					0	0	0			REV__tr|A0A553SRN1|A0A553SRN1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01315PE=4SV=1	REV__tr|A0A553SRN1|A0A553SRN1_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_01315PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8697509765625	2	619.873382	1237.73221	-1.8761	-0.001163	-4.4777	-0.0027756	-6.3538	-0.0039386	619.8704234308321	147.79	3.8764	146.35	144.25	148.12	-1.4351					189	77	4	0	0	0	0.72499	1	14715	14715		15.642	1.5047	1	269210	+		65537	30750	54005	54059	72152	72152					0.12285474927944051
YVIELQHVV	9	Unmodified	_YVIELQHVV_					0	0	0		ENST00000494984.5_1_3:49135981-49136101:-|nuORF;ENST00000470113.2_1_3:49135784-49136686:-|nuORF;nc|ENSG00000172053|P47897-2|QARS1;ENSG00000172053|ENST00000306125|QARS1	ENST00000494984.5_1_3:49135981-49136101:-|nuORF	ENST00000494984.5_1_3:49135981-49136101:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	550.3123779296875	2	550.310949	1098.60735	-0.043013	-2.3671E-05	0.039993	2.2008E-05	-0.0030204	-1.6622E-06	550.3108838114704	105.39	0.56883	105.39	105.18	105.75	0					20	12	2	0	0	0	0.40818	1	11851	11851		51.193	0	1	1075700			65538	7263	54006	54060	72153	72153					0.06198602511426543
YVIFKIPATV	10	Unmodified	_YVIFKIPATV_					0	0	0		ENSG00000135697|ENST00000258168|BCO1	ENSG00000135697|ENST00000258168|BCO1	ENSG00000135697|ENST00000258168|BCO1	MULTI-MSMS	OvCa9_classI_Rep2	2	575.8426513671875	2	575.847167	1149.67978	-2.8608	-0.0016474	-4.0802	-0.0023496	-6.941	-0.0039969	575.8446547318163	144.83	4.8673	144.6	143.15	148.02	-0.22696					349	97	5	0	0	0	0.76627	1	14470	14470		23.042	7.4007	1	356230			65539	4402	54007	54061	72154	72154					0.11092936584987001
YVIGEKMNIQ	10	Unmodified	_YVIGEKMNIQ_					0	0	0		tr|A0A7D6VYC8|A0A7D6VYC8_9CLOTYigZfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15395PE=3SV=1	tr|A0A7D6VYC8|A0A7D6VYC8_9CLOTYigZfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15395PE=3SV=1	tr|A0A7D6VYC8|A0A7D6VYC8_9CLOTYigZfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15395PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	597.8152465820312	2	597.812999	1193.61144	0.40557	0.00024246	-0.47493	-0.00028392	-0.069358	-4.1463E-05	597.8125830940003	57.896	0.97141	57.896	57.309	58.28	0					51	17	4	0	0	0	0.47142	1	4895	4895		58.23	10.573	1	4161000			65540	35327	54008	54062	72155	72155					0.022383239428108936
YVIGEKMNIQ	10	Unmodified	_YVIGEKMNIQ_					0	0	0		tr|A0A7D6VYC8|A0A7D6VYC8_9CLOTYigZfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15395PE=3SV=1	tr|A0A7D6VYC8|A0A7D6VYC8_9CLOTYigZfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15395PE=3SV=1	tr|A0A7D6VYC8|A0A7D6VYC8_9CLOTYigZfamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_15395PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	597.812999	1193.61144	0.73742	0.00044084	0.60272	0.00036032	1.3401	0.00080116	597.8118556632303	61	0.29945	57.57	57.345	57.644	-3.43	-0.16318	0.0012701	NaN	58.23	11	5	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	26417			65541	35327	54008	54062							0.022383239428108936
YVIIALEYV	9	Unmodified	_YVIIALEYV_					0	0	0			REV__ENST00000495425.6_1_17:19458825-19480863:+|nuORF	REV__ENST00000495425.6_1_17:19458825-19480863:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	541.811767578125	2	541.810251	1081.60595	1.0588	0.00057366	1.266	0.00068592	2.3247	0.0012596	541.8105253937778	156.04	0.76044	156.04	155.79	156.55	0					25	14	2	0	0	0	0.52083	1	18280	18280		40.573	3.4135	1	57261	+		65542	19787	54009	54063	72156	72156					0.06840968422625338
YVIIASVRF	9	Unmodified	_YVIIASVRF_					0	0	0			REV__ENSG00000171928|ENST00000307767|TVP23B	REV__ENSG00000171928|ENST00000307767|TVP23B	MULTI-SECPEP	OvCa9_classI_Rep4_	4	533.348876953125	2	534.316035	1066.61752	-1.3742	-0.00073426	1.3842	0.00073958	0.00996	5.3218E-06	534.3164495660102	94.742	0.85199	92.274	92.06	92.912	-2.4685					21	16	2	0	0	0	0.027441	1	8294	8294		55.504	11.387	1	34582	+		65543	21657	54010	54064	72157	72157					0.08687210236666942
YVIIKPLVWV	10	Unmodified	_YVIIKPLVWV_					0	0	0		ENSG00000132703|ENST00000255040|APCS	ENSG00000132703|ENST00000255040|APCS	ENSG00000132703|ENST00000255040|APCS	MULTI-MSMS	OvCa99_classI_Rep5	1	615.8897705078125	2	615.38646	1228.75837	0.61621	0.00037921	2.0845	0.0012828	2.7007	0.001662	615.3874565624061	141.32	1.0535	141.32	140.83	141.88	0					55	20	4	0	0	0	0.45225	1	16506	16506		60.972	2.19	1	314920			65544	4166	54011	54065	72158	72158					0.15313788890057367
YVIILYVY	8	Unmodified	_YVIILYVY_					0	0	0			REV__sp|P16783|TRX1_HCMVATriplexcapsidprotein1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRX1PE=1SV=1	REV__sp|P16783|TRX1_HCMVATriplexcapsidprotein1OS=Humancytomegalovirus(strainAD169)OX=10360GN=TRX1PE=1SV=1	MSMS	OvCa9_classI_Rep4_	4	523.3045654296875	2	523.302062	1044.58957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	141.4	1	139.94	139.44	140.44	-1.4627								0	0	0	0.30129	1	13815	13815		24.504	1.4615	1		+		65545	29385	54012	54066	72159	72159					0.06905887256561982
YVIKEYFTN	9	Unmodified	_YVIKEYFTN_					0	0	0		tr|A0A7D6VPJ9|A0A7D6VPJ9_9CLOTglucose-1-phosphatecytidylyltransferaseOS=ClostridiumintestinaleOX=36845GN=rfbFPE=4SV=1	tr|A0A7D6VPJ9|A0A7D6VPJ9_9CLOTglucose-1-phosphatecytidylyltransferaseOS=ClostridiumintestinaleOX=36845GN=rfbFPE=4SV=1	tr|A0A7D6VPJ9|A0A7D6VPJ9_9CLOTglucose-1-phosphatecytidylyltransferaseOS=ClostridiumintestinaleOX=36845GN=rfbFPE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	588.783935546875	2	588.800414	1175.58628	-0.91383	-0.00053806	4.4054	0.0025939	3.4916	0.0020559	588.802988339602	70.635	0.24239	67.154	67.032	67.275	-3.4812					6	4	2	0	0	0	0.027462	1	5337	5337		24.519	0	1	38767			65546	34775	54013	54067	72160	72160					0.005505924119006522
YVILLCHFL	9	Unmodified	_YVILLCHFL_					0	0	0		ENSG00000173612|ENST00000310357|GPRC6A;nc|ENSG00000173612|Q5T6X5-2|GPRC6A;nc|ENSG00000173612|Q5T6X5-3|GPRC6A	ENSG00000173612|ENST00000310357|GPRC6A	ENSG00000173612|ENST00000310357|GPRC6A	MULTI-MSMS	OvCa99_classI_Rep5	1	560.815185546875	2	560.814813	1119.61507	1.8448	0.0010346	-2.9648	-0.0016627	-1.12	-0.00062812	560.8132755155216	146.19	1.6293	146.19	145.73	147.36	0					85	32	5	0	0	0	0.32242	1	17089	17089		60.404	7.0522	1	1540700			65547	7397	54014	54068	72161	72161					0.06005038507350946
YVIPWDVIQ	9	Unmodified	_YVIPWDVIQ_					0	0	0			REV__nc|ENSG00000143473|O95259-2|KCNH1	REV__nc|ENSG00000143473|O95259-2|KCNH1	MULTI-MSMS	OvCa9_classI_Rep4_	4	566.8095092773438	2	566.8055	1131.59645	0.42274	0.00023961	-0.46397	-0.00026298	-0.041231	-2.337E-05	566.8051055015428	103.17	3.0728	100.97	100.04	103.12	-2.1994					161	58	4	0	0	0	0.21395	1	9270	9270		73.975	17.254	1	392830	+		65548	19843	54015	54069	72162	72162					0.035912001371116276
YVITVTSL	8	Unmodified	_YVITVTSL_					0	0	0			REV__ENSG00000134115|ENST00000446702|CNTN6	REV__ENSG00000134115|ENST00000446702|CNTN6	MULTI-MSMS	OvCa9_classI_Rep2	2	448.25885009765625	2	448.260394	894.506234	0.91253	0.00040905	-3.8894	-0.0017435	-2.9769	-0.0013344	448.25856617736815	142.24	1.5311	142.01	141.52	143.05	-0.22696					82	30	4	0	0	0	0.75915	1	14315	14315		20.482	0	1	131560	+		65549	19175	54016	54070	72163	72163					0.05476150808715374
YVKCLVALL	9	Unmodified	_YVKCLVALL_					0	0	0			REV__RETSAT|p.L68Sfs*21|1|0.16|ENSG00000042445|chr2:85351833-85351834|-/A|frameshift_variant	REV__RETSAT|p.L68Sfs*21|1|0.16|ENSG00000042445|chr2:85351833-85351834|-/A|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	511.3092041015625	2	511.309364	1020.60417	2.144	0.0010963	-3.4878	-0.0017834	-1.3438	-0.0006871	511.3073322151525	110.77	0.88873	110.77	110.4	111.29	0					47	19	4	0	0	0	0.32337	1	12595	12595		60.294	2.4827	1	863920	+		65550	16640	54017	54071	72164	72164					0.09469636133053427
YVKDDIFRIYI	11	Unmodified	_YVKDDIFRIYI_					0	0	0		nc|ENSG00000161011|Q13501-2|SQSTM1;ENSG00000161011|ENST00000389805|SQSTM1	nc|ENSG00000161011|Q13501-2|SQSTM1	nc|ENSG00000161011|Q13501-2|SQSTM1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	481.7699890136719	3	482.26601	1443.7762	-1.0081	-0.00048619	1.2728	0.00061381	0.26463	0.00012762	482.2664211567942	65.851	0.53484	62.365	62.082	62.617	-3.4854					18	10	3	0	0	0	0.026344	1	4784	4784		14.086	0	1	42904			65551	6114	54018	54072	72165	72165					0.07206459354301842
YVKDDIFRIYI	11	Unmodified	_YVKDDIFRIYI_					0	0	0		nc|ENSG00000161011|Q13501-2|SQSTM1;ENSG00000161011|ENST00000389805|SQSTM1	nc|ENSG00000161011|Q13501-2|SQSTM1	nc|ENSG00000161011|Q13501-2|SQSTM1	MULTI-MATCH	OvCa9_classI_Rep2	2		3	482.26601	1443.7762	0.21425	0.00010333	0.81568	0.00039337	1.0299	0.0004967	482.26592224284224	64.959	0.8728	62.234	61.97	62.843	-2.7245	-0.065699	-0.00037159	NaN	8.7993	32	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	25965			65552	6114	54018	54072							0.07206459354301842
YVKDFHKF	8	Unmodified	_YVKDFHKF_					0	0	0		ENSG00000196081|ENST00000418100|ZNF724	ENSG00000196081|ENST00000418100|ZNF724	ENSG00000196081|ENST00000418100|ZNF724	MULTI-MSMS	OvCa99_classI_Rep5	1	542.2852783203125	2	542.284734	1082.55492	-0.77399	-0.00041972	1.2125	0.00065755	0.43856	0.00023782	542.2854499998739	42.124	0.94304	42.124	41.681	42.624	0					34	21	3	0	0	0	0.65267	1	2682	2682		52.937	18.764	1	307320			65553	8560	54019	54073	72166	72166					0.016940641684641378
YVKDITKLD	9	Unmodified	_YVKDITKLD_					0	0	0		ENSG00000155657|ENST00000589042|TTN;nc|ENSG00000155657|Q8WZ42-12|TTN;TTN|p.L33528Pfs*5|1|0.39|ENSG00000155657|chr2:178531097-178531109|GCAGAAGTACTTA/-|frameshift_variant;TTN|p.L33064Hfs*53|1|0.04|ENSG00000155657|chr2:178532501-178532502|-/AACCTTGCAGACTCGCCCTCGTAGACGGTCAT|frameshift_variant;TTN|p.Y33007Hfs*12|1|0.05|ENSG00000155657|chr2:178532673-178532674|-/TTCTCAGTGTGATTCGAGGGGCATG|frameshift_variant;TTN|p.K33182Qfs*13|1|0.07|ENSG00000155657|chr2:178532148-178532149|-/G|frameshift_variant;nc|ENSG00000155657|Q8WZ42-8|TTN;nc|ENSG00000155657|Q8WZ42|TTN;nc|ENSG00000155657|Q8WZ42-2|TTN;nc|ENSG00000155657|Q8WZ42-13|TTN;nc|ENSG00000155657|Q8WZ42-5|TTN;nc|ENSG00000155657|Q8WZ42-4|TTN;nc|ENSG00000155657|Q8WZ42-7|TTN;nc|ENSG00000155657|Q8WZ42-11|TTN;nc|ENSG00000155657|Q8WZ42-9|TTN;nc|ENSG00000155657|Q8WZ42-10|TTN;nc|ENSG00000155657|Q8WZ42-3|TTN	ENSG00000155657|ENST00000589042|TTN	ENSG00000155657|ENST00000589042|TTN	MULTI-MSMS	OvCa99_classI_Rep5	1	547.8089599609375	2	547.808239	1093.60193	-0.46034	-0.00025218	1.5008	0.00082214	1.0405	0.00056997	547.8089326720245	61.847	1.2314	61.847	61.585	62.816	0					76	29	4	0	0	0	0.27001	1	5489	5489		66.429	8.618	1	9176500			65554	5793	54020	54074	72167	72167					0.05886878928936312
YVKDRVEKV	9	Unmodified	_YVKDRVEKV_					0	0	0		nc|ENSG00000057608|P50395-2|GDI2;ENSG00000057608|ENST00000380191|GDI2	nc|ENSG00000057608|P50395-2|GDI2	nc|ENSG00000057608|P50395-2|GDI2	MULTI-MSMS	OvCa99_classI_Rep5	1	568.3268432617188	2	568.327131	1134.63971	-0.90985	-0.0005171	1.2479	0.00070923	0.33808	0.00019214	568.3276984111144	34.328	0.7988	34.328	34.065	34.864	0					38	16	5	0	0	0	0.20111	1	1651	1651		76.17	14.062	1	508290			65555	1237	54021	54075	72168	72168					0.07777389914417654
YVKEFTGPTVS	11	Unmodified	_YVKEFTGPTVS_					0	0	0		ENSG00000090402|ENST00000264382|SI	ENSG00000090402|ENST00000264382|SI	ENSG00000090402|ENST00000264382|SI	MULTI-MSMS	OvCa9_classI_Rep4_	4	614.3180541992188	2	614.316428	1226.6183	-0.24835	-0.00015257	1.0767	0.00066143	0.82835	0.00050887	614.3168689310787	52.474	1.3083	49.266	48.943	50.252	-3.208					87	25	6	0	0	0	0.60323	1	3155	3155		44.377	0	1	868040			65556	1838	54022	54076	72169	72169					0.014059600950531603
YVKLAAKNW	9	Unmodified	_YVKLAAKNW_					0	0	0			REV__tr|A0A7D6VSS5|A0A7D6VSS5_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17955PE=4SV=1	REV__tr|A0A7D6VSS5|A0A7D6VSS5_9CLOTHelix-turn-helixdomain-containingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_17955PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.7610473632812	2	546.813659	1091.61277	-0.25542	-0.00013967	0.40192	0.00021978	0.1465	8.0107E-05	546.8136262414105	61.079	0.68631	61.079	60.646	61.332	0					24	15	2	0	0	0	0.027462	1	5394	5394		30.504	8.8013	1	177840	+		65557	31533	54023	54077	72170	72170					0.0706232609388735
YVKLLVGSNI	10	Unmodified	_YVKLLVGSNI_					0	0	0			REV__tr|A0A7D6ZZ20|A0A7D6ZZ20_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18605PE=4SV=1	REV__tr|A0A7D6ZZ20|A0A7D6ZZ20_9CLOTDiguanylatecyclaseOS=ClostridiumintestinaleOX=36845GN=HZF06_18605PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	553.330322265625	2	553.334424	1104.6543	-3.6376	-0.0020128	-0.28672	-0.00015865	-3.9243	-0.0021714	553.3340858441829	153.01	1.0617	151.57	151.24	152.3	-1.435					63	25	4	0	0	0	0.77834	1	15192	15192		21.686	4.2177	1	106460	+		65558	32396	54024	54078	72171	72171					0.10615462062582992
YVKMYFLPD	9	Unmodified	_YVKMYFLPD_					0	0	0		ENST00000524197.1_1_6:72926891-72975792:+|nuORF;nc|ENSG00000079841|Q86UR5-10|RIMS1;nc|ENSG00000079841|Q86UR5-13|RIMS1;nc|ENSG00000079841|Q86UR5-9|RIMS1;nc|ENSG00000079841|Q86UR5-12|RIMS1;nc|ENSG00000079841|Q86UR5-2|RIMS1;nc|ENSG00000079841|Q86UR5-8|RIMS1;nc|ENSG00000079841|Q86UR5-7|RIMS1;nc|ENSG00000079841|Q86UR5-6|RIMS1;nc|ENSG00000079841|Q86UR5-5|RIMS1;nc|ENSG00000079841|Q86UR5-3|RIMS1;nc|ENSG00000079841|Q86UR5-4|RIMS1;ENSG00000079841|ENST00000521978|RIMS1	ENST00000524197.1_1_6:72926891-72975792:+|nuORF	ENST00000524197.1_1_6:72926891-72975792:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.7403564453125	2	588.293911	1174.57327	0.69614	0.00040954	-1.6344	-0.00096152	-0.93828	-0.00055199	588.2930328300032	141.95	0.79834	141.95	141.44	142.23	0					21	15	2	0	0	0	0.027462	1	16558	16558		26.693	0	1	35330			65559	1623	54025	54079	72172	72172					-0.00703561971840827
YVKNHTGVSL	10	Unmodified	_YVKNHTGVSL_					0	0	0		tr|A0A7D6VZR0|A0A7D6VZR0_9CLOTThiaminepyrophosphate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20680PE=3SV=1	tr|A0A7D6VZR0|A0A7D6VZR0_9CLOTThiaminepyrophosphate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20680PE=3SV=1	tr|A0A7D6VZR0|A0A7D6VZR0_9CLOTThiaminepyrophosphate-bindingproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_20680PE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	558.7626342773438	2	559.303655	1116.59276	0.6647	0.00037177	2.1726	0.0012152	2.8373	0.0015869	559.3048087736964	57.617	0.6739	57.617	57.396	58.069	0					24	15	2	0	0	0	0.026635	1	4884	4884		56.721	21.103	1	955480			65560	35365	54026	54080	72173	72173					0.03912530363299993
YVKRAEGG	8	Unmodified	_YVKRAEGG_					0	0	0			REV__ENSG00000116984|ENST00000366577|MTR	REV__ENSG00000116984|ENST00000366577|MTR	MULTI-MSMS	OvCa99_classI_Rep5	1	440.2373962402344	2	440.237784	878.461016	0.23135	0.00010185	-4.4711	-0.0019684	-4.2398	-0.0018665	440.2358016589977	70.16	0.8777	70.16	69.883	70.761	0					39	21	2	0	0	0	0.73938	1	6702	6702		31.955	2.1133	1	1753000	+		65561	18328	54027	54081	72174	72174					0.01692345066192047
YVKRAEGG	8	Unmodified	_YVKRAEGG_					0	0	0			REV__ENSG00000116984|ENST00000366577|MTR	REV__ENSG00000116984|ENST00000366577|MTR	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	440.237784	878.461016	0.23135	0.00010185	-4.4711	-0.0019684	-4.2398	-0.0018665	440.2358016589977	70.16	0.8777	70.16	69.883	70.761	0	0	0	NaN	31.955	39	21	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	1753000	+		65562	18328	54027	54081							0.01692345066192047
YVKRQNLH	8	Unmodified	_YVKRQNLH_					0	0	0		L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|99|3|sense	L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|99|3|sense	L1PA7_dup8181|chrX:79196566-79201431:+|5.519659473189785|0.01783793769257|8.27|429.0|99|3|sense	MULTI-MSMS	OvCa99_classI_Rep5	1	529.2993774414062	2	529.298707	1056.58286	-0.0084851	-4.4911E-06	0.40541	0.00021458	0.39693	0.00021009	529.2985291294792	32.179	0.59621	32.179	32.006	32.602	0					31	11	3	0	0	0	0.69415	1	1382	1382		44.531	3.7529	1	248180			65563	14762	54028	54082	72175	72175					0.05683387148565089
YVKSVLKGK	9	Unmodified	_YVKSVLKGK_					0	0	0		ENST00000468480.5_1_13:26795388-26795430:-|nuORF	ENST00000468480.5_1_13:26795388-26795430:-|nuORF	ENST00000468480.5_1_13:26795388-26795430:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.8434753417969	2	511.32386	1020.63317	0.37713	0.00019284	-0.79	-0.00040394	-0.41286	-0.00021111	511.32346857291145	124.66	0.78911	124.43	124.27	125.06	-0.23193					22	15	2	0	0	0	0.027462	1	12163	12163		27.882	17.017	1	17428			65564	12331	54029	54083	72176	72176					0.12367496753711293
YVKVISPQSI	10	Unmodified	_YVKVISPQSI_					0	0	0			REV__ENSG00000137338|ENST00000682144|PGBD1	REV__ENSG00000137338|ENST00000682144|PGBD1	MULTI-MSMS	OvCa9_classI_Rep3	3	567.3284912109375	2	567.331882	1132.64921	-2.6412	-0.0014984	-1.2123	-0.00068778	-3.8535	-0.0021862	567.3310908608092	141.92	3.9983	140.91	138.91	142.91	-1.0106					224	80	5	0	0	0	0.70152	1	11798	11798		30.318	3.5216	1	127690	+		65565	19446	54030	54084	72177	72177					0.0881915819995811
YVLFTILAAL	10	Unmodified	_YVLFTILAAL_					0	0	0			REV__ENSG00000178301|ENST00000313578|AQP11	REV__ENSG00000178301|ENST00000313578|AQP11	MULTI-MSMS	OvCa9_classI_Rep4_	4	562.3445434570312	2	562.341718	1122.66888	1.2434	0.00069921	1.8105	0.0010181	3.0539	0.0017173	562.3426802685474	142.72	5.3312	141.28	139.89	145.22	-1.4427					298	102	5	0	0	0	0.75594	1	13972	13972		24.203	3.2558	1	683710	+		65566	22055	54031	54085	72178	72178					0.11245534210706865
YVLGTGLILY	10	Unmodified	_YVLGTGLILY_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-MSMS	OvCa9_classI_Rep3	3	556.3226318359375	2	556.323525	1110.6325	0.84512	0.00047016	-0.93378	-0.00051948	-0.088662	-4.9325E-05	556.3228767199973	126.67	1.4636	125.6	125.28	126.75	-1.0715					78	27	5	0	0	0	0.49049	1	9913	9913		55.504	6.0627	1	271850			65567	3179	54032	54086	72179	72179					0.08160657314010678
YVLGTGLILY	10	Unmodified	_YVLGTGLILY_					0	0	0		ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	ENSG00000116459|ENST00000369722|ATP5PB	MULTI-MSMS	OvCa9_classI_Rep4_	4	556.3234252929688	2	556.323525	1110.6325	-0.97737	-0.00054373	0.7636	0.00042481	-0.21377	-0.00011892	556.3237904713112	126.92	1.6681	125.48	125.15	126.81	-1.4357					83	32	4	0	0	0	0.62668	1	12132	12132		38.806	3.1879	1	275220			65568	3179	54032	54086	72180	72180					0.08160657314010678
YVLIYSFF	8	Unmodified	_YVLIYSFF_					0	0	0			REV__ENSG00000081800|ENST00000194130|SLC13A1	REV__ENSG00000081800|ENST00000194130|SLC13A1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2926635742188	2	526.278586	1050.54262	1.1922	0.00062741	4.3304	0.002279	5.5226	0.0029064	526.7783737619327	149.35	0.44011	149.35	149.11	149.55	0					13	8	3	0	0	0	0.028476	1	17501	17501		21.702	0	1	30811	+		65569	17075	54033	54087	72181	72181					0.019370277054122198
YVLLRSNPD	9	Unmodified	_YVLLRSNPD_					0	0	0		ENSG00000213822|ENST00000396477|CEACAM18	ENSG00000213822|ENST00000396477|CEACAM18	ENSG00000213822|ENST00000396477|CEACAM18	MULTI-MSMS	OvCa9_classI_Rep4_	4	538.7904663085938	2	538.790381	1075.56621	-1.6341	-0.00088043	-1.4178	-0.0007639	-3.0519	-0.0016443	538.7894557652842	53.481	1.2278	50.273	49.944	51.171	-3.208					61	23	3	0	0	0	0.66262	1	3274	3274		24.519	0.31644	1	388100			65570	9150	54034	54088	72182	72182					0.03144841471953441
YVLNGLGSFA	10	Unmodified	_YVLNGLGSFA_					0	0	0		tr|A0A7D6VS20|A0A7D6VS20_9CLOTPhosphoribosylformylglycinamidinecyclo-ligaseOS=ClostridiumintestinaleOX=36845GN=purMPE=3SV=1	tr|A0A7D6VS20|A0A7D6VS20_9CLOTPhosphoribosylformylglycinamidinecyclo-ligaseOS=ClostridiumintestinaleOX=36845GN=purMPE=3SV=1	tr|A0A7D6VS20|A0A7D6VS20_9CLOTPhosphoribosylformylglycinamidinecyclo-ligaseOS=ClostridiumintestinaleOX=36845GN=purMPE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	519.84228515625	2	520.7742	1039.53385	-0.79384	-0.00041341	-3.5843	-0.0018666	-4.3782	-0.00228	520.7723862164241	104.33	1.0438	102.21	101.9	102.95	-2.1192					40	19	3	0	0	0	0.02661	1	9441	9441		49.442	3.4896	1	88031			65571	34977	54035	54089	72183	72183					0.015660540689623303
YVLNGLGSFA	10	Unmodified	_YVLNGLGSFA_					0	0	0		tr|A0A7D6VS20|A0A7D6VS20_9CLOTPhosphoribosylformylglycinamidinecyclo-ligaseOS=ClostridiumintestinaleOX=36845GN=purMPE=3SV=1	tr|A0A7D6VS20|A0A7D6VS20_9CLOTPhosphoribosylformylglycinamidinecyclo-ligaseOS=ClostridiumintestinaleOX=36845GN=purMPE=3SV=1	tr|A0A7D6VS20|A0A7D6VS20_9CLOTPhosphoribosylformylglycinamidinecyclo-ligaseOS=ClostridiumintestinaleOX=36845GN=purMPE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	520.7742	1039.53385	-0.59672	-0.00031076	-3.8642	-0.0020124	-4.4609	-0.0023231	520.772114990829	103.2	0.98669	102.52	102.08	103.07	-0.68459	0.19064	0.00018202	NaN	49.442	27	19	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	24877			65572	34977	54035	54089							0.015660540689623303
YVLNILKNT	9	Unmodified	_YVLNILKNT_					0	0	0			REV__tr|A0A7D6ZTP8|A0A7D6ZTP8_9CLOTClass1isoprenoidbiosynthesisenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_21060PE=4SV=1	REV__tr|A0A7D6ZTP8|A0A7D6ZTP8_9CLOTClass1isoprenoidbiosynthesisenzymeOS=ClostridiumintestinaleOX=36845GN=HZF06_21060PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	540.3097534179688	2	539.318774	1076.623	2.0308	0.0010953	-1.9574	-0.0010556	0.07348	3.9629E-05	539.3179722427147	118.2	0.46729	118.2	118.02	118.49	0					12	9	2	0	0	0	0.027462	1	13566	13566		40.778	22.516	1	43696	+		65573	32208	54036	54090	72184	72184					0.08774889028450161
YVLPSRPPT	9	Unmodified	_YVLPSRPPT_					0	0	0		ENST00000478776.1_1_9:2646370-2647636:+|nuORF	ENST00000478776.1_1_9:2646370-2647636:+|nuORF	ENST00000478776.1_1_9:2646370-2647636:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep2	2	516.27880859375	2	515.290017	1028.56548	-0.66226	-0.00034125	-2.3596	-0.0012159	-3.0219	-0.0015571	515.2888088069819	67.444	0.79105	64.783	64.495	65.286	-2.661					24	15	2	0	0	0	0.027433	1	5285	5285		60.972	18.576	1	13275			65574	12497	54037	54091	72185	72185					0.05234046822897653
YVLPTISLDL	10	Unmodified	_YVLPTISLDL_					0	0	0			REV__ENST00000487723.1_1_2:152684076-152684343:-|nuORF	REV__ENST00000487723.1_1_2:152684076-152684343:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	566.8062744140625	2	567.326265	1132.63798	0.3649	0.00020702	2.8435	0.0016132	3.2083	0.0018202	567.3279203786957	103.22	0.57183	101.02	100.78	101.35	-2.1994					18	10	2	0	0	0	0.026639	1	9336	9336		44.117	0	1	22548	+		65575	26608	54038	54092	72186	72186					0.07696336105800583
YVLPVLLAM	9	Unmodified	_YVLPVLLAM_					0	0	0			REV__ENST00000533444.1_1_8:145150729-145152236:+|nuORF	REV__ENST00000533444.1_1_8:145150729-145152236:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	509.80535888671875	2	509.803914	1017.59328	2.0238	0.0010317	-2.3362	-0.001191	-0.31239	-0.00015926	509.80258654056354	136.53	4.9049	134.99	133.61	138.51	-1.5437					290	101	5	0	0	0	0.68641	2	13499	13499;13537		21.702	7.0382	1	173450	+		65576	22099	54039	54093	72187;72188	72187					0.08518233758763927
YVLQKLLHKP	10	Unmodified	_YVLQKLLHKP_					0	0	0		tr|A0A553SLF8|A0A553SLF8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20560PE=4SV=1	tr|A0A553SLF8|A0A553SLF8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20560PE=4SV=1	tr|A0A553SLF8|A0A553SLF8_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_20560PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	413.5848083496094	3	413.592169	1237.75468	1.2623	0.00052208	2.4071	0.00099557	3.6694	0.0015176	413.59301226627093	63.532	0.4772	63.532	63.296	63.773	0					25	11	3	0	0	0	0.027117	1	5755	5755		16.007	0	1	391420			65577	33719	54040	54094	72189	72189					0.1453111911621363
YVLRGPVL	8	Unmodified	_YVLRGPVL_					0	0	0		ENST00000331808.4_1_16:11035614-11036010:-|nuORF	ENST00000331808.4_1_16:11035614-11036010:-|nuORF	ENST00000331808.4_1_16:11035614-11036010:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	458.78515625	2	458.78437	915.554188	2.3853	0.0010943	-0.10264	-4.7089E-05	2.2826	0.0010472	458.78420919881023	84.175	0.54735	84.175	83.965	84.512	0					27	12	3	0	0	0	0.7043	1	8786	8786		42.474	3.6683	1	607240			65578	10450	54041	54095	72190	72190					0.09303269519409696
YVLRGPVL	8	Unmodified	_YVLRGPVL_					0	0	0		ENST00000331808.4_1_16:11035614-11036010:-|nuORF	ENST00000331808.4_1_16:11035614-11036010:-|nuORF	ENST00000331808.4_1_16:11035614-11036010:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep3	3		2	458.78437	915.554188	-1.1031	-0.00050607	1.7365	0.00079667	0.63341	0.0002906	458.7853092943593	86.201	0.20193	83.981	83.885	84.087	-2.2204	-0.096908	0.0013227	NaN	42.474	6	3	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	14989			65579	10450	54041	54095							0.09303269519409696
YVLSLGFVLAL	11	Unmodified	_YVLSLGFVLAL_					0	0	0			REV__ENSG00000111412|ENST00000261318|SPRING1	REV__ENSG00000111412|ENST00000261318|SPRING1	MULTI-MSMS	OvCa9_classI_Rep3	3	597.8558349609375	2	597.860275	1193.706	-2.7036	-0.0016164	-3.9017	-0.0023327	-6.6053	-0.0039491	597.8577896270245	147.95	5.5614	147	145.5	151.06	-0.9512					324	110	5	0	0	0	0.52685	1	12629	12629		51.335	1.8939	1	591030	+		65580	18033	54042	54096	72191	72191					0.11689205756488263
YVLVTMHR	8	Unmodified	_YVLVTMHR_					0	0	0		nc|ENSG00000217128|Q8TF40-3|FNIP1;ENSG00000217128|ENST00000510461|FNIP1	nc|ENSG00000217128|Q8TF40-3|FNIP1	nc|ENSG00000217128|Q8TF40-3|FNIP1	MULTI-SECPEP	OvCa9_classI_Rep2	2	510.76385498046875	2	509.778762	1017.54297	0.72872	0.00037149	0.82208	0.00041908	1.5508	0.00079056	509.7791163855185	42.484	0.44399	39.775	39.621	40.065	-2.7097					12	8	2	0	0	0	0.028476	1	2293	2293		20.482	5.8177	1	18965			65581	9216	54043	54097	72192	72192					0.034901241536317684
YVMISPFKV	9	Unmodified	_YVMISPFKV_					0	0	0			REV__SEL1L3-BHLHE41|1|fusion	REV__SEL1L3-BHLHE41|1|fusion	MULTI-SECPEP	OvCa99_classI_Rep5	1	542.2728881835938	2	542.298996	1082.58344	1.6848	0.00091369	-0.32757	-0.00017764	1.3573	0.00073605	542.2984909910541	112.47	0.81404	112.47	112.11	112.92	0					25	17	2	0	0	0	0.027447	1	12793	12793		39.253	0	1	134580	+		65582	29351	54044	54098	72193	72193					0.045450457533888766
YVMLKTKRVT	10	Unmodified	_YVMLKTKRVT_					0	0	0		ENSG00000136908|ENST00000314392|DPM2;ENST00000495270.1_1_9:130698003-130699012:-|nuORF	ENSG00000136908|ENST00000314392|DPM2	ENSG00000136908|ENST00000314392|DPM2	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8693237304688	2	619.868108	1237.72166	-1.8762	-0.001163	4.0305	0.0024984	2.1543	0.0013354	619.8704234308321	147.79	3.8764	146.35	144.25	148.12	-1.4351					189	77	4	0	0	0	0.80581	1	14488	14488		18.262	1.5447	1	269210			65583	4531	54045	54099	72194	72194					0.11231169001871422
YVMLMQHSLF	10	Unmodified	_YVMLMQHSLF_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	OvCa99_classI_Rep5	1	634.8179931640625	2	634.811944	1267.60934	2.4019	0.0015247	2.2283	0.0014145	4.6302	0.0029393	634.813355752859	96.985	1.7504	96.985	96.668	98.419	0					116	40	5	0	0	0	0.35465	1	10619	10619		74.255	8.7897	1	19244000			65584	4962	54046	54100	72195	72195					-0.013764280666464401
YVMVFILLNF	10	Unmodified	_YVMVFILLNF_					0	0	0			REV__ENSG00000157542|ENST00000609713|KCNJ6	REV__ENSG00000157542|ENST00000609713|KCNJ6	MULTI-MSMS	OvCa9_classI_Rep2	2	420.23504638671875	3	420.234994	1257.68315	0.68567	0.00028814	-1.1727	-0.00049279	-0.48698	-0.00020465	420.2344713128282	81.289	1.7459	79.641	79.215	80.961	-1.6485					104	33	5	0	0	0	0.42962	1	6900	6900		64.207	19.83	1	784250	+		65585	16028	54047	54101	72196	72196					0.06461863367371734
YVMVFILLNF	10	Unmodified	_YVMVFILLNF_					0	0	0			REV__ENSG00000157542|ENST00000609713|KCNJ6	REV__ENSG00000157542|ENST00000609713|KCNJ6	MULTI-MSMS	OvCa9_classI_Rep4_	4	420.2362365722656	3	420.234994	1257.68315	-1.1437	-0.00048063	0.91324	0.00038377	-0.23048	-9.6858E-05	420.23536394532596	82.248	1.4587	79.565	79.251	80.71	-2.6829					86	29	4	0	0	0	0.55359	2	6788	6788;6814		47.657	1.6851	1	872280	+		65586	16028	54047	54101	72197;72198	72197					0.06461863367371734
YVMVFILLNF	10	Unmodified	_YVMVFILLNF_					0	0	0			REV__ENSG00000157542|ENST00000609713|KCNJ6	REV__ENSG00000157542|ENST00000609713|KCNJ6	MULTI-MATCH	OvCa9_classI_Rep3	3		3	420.234994	1257.68315	-0.089447	-3.7589E-05	-0.30772	-0.00012932	-0.39717	-0.0001669	420.2348483822063	81.949	1.7968	79.653	79.284	81.081	-2.2963	0.03302	0.00010295	NaN	64.207	118	35	5	NaN	NaN	NaN	NaN	0				NaN	NaN	0	673180	+		65587	16028	54047	54101							0.06461863367371734
YVNLTQLIGR	10	Unmodified	_YVNLTQLIGR_					0	0	0			REV__ENSG00000173456|ENST00000311413|RNF26	REV__ENSG00000173456|ENST00000311413|RNF26	MULTI-SECPEP	OvCa99_classI_Rep5	1	589.7734375	2	588.840405	1175.66626	-0.059868	-3.5252E-05	-0.0683	-4.0218E-05	-0.12817	-7.547E-05	588.8406229576274	68.948	0.33267	68.948	68.774	69.106	0					13	7	2	0	0	0	0.026782	1	6542	6542		37.812	4.9991	1	249200	+		65588	21774	54048	54102	72199	72199					0.08545078805764206
YVNNKSHVQ	9	Unmodified	_YVNNKSHVQ_					0	0	0		ENST00000237937.7_1_9:74969344-74969449:-|nuORF	ENST00000237937.7_1_9:74969344-74969449:-|nuORF	ENST00000237937.7_1_9:74969344-74969449:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	545.3062133789062	2	544.777805	1087.54106	-0.47852	-0.00026069	-0.7305	-0.00039796	-1.209	-0.00065865	544.7772509842277	39.098	0.89369	36.171	35.948	36.841	-2.9264					25	17	2	0	0	0	0.027462	1	1559	1559		20.947	0	1	86988			65589	9748	54049	54103	72200	72200					0.0007878666935994261
YVNNKSHVQ	9	Unmodified	_YVNNKSHVQ_					0	0	0		ENST00000237937.7_1_9:74969344-74969449:-|nuORF	ENST00000237937.7_1_9:74969344-74969449:-|nuORF	ENST00000237937.7_1_9:74969344-74969449:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	544.777805	1087.54106	-1.1092	-0.00060427	-0.4564	-0.00024863	-1.5656	-0.0008529	544.7774515046572	39.243	0.89143	36.533	36.31	37.202	-2.7097	0.181	9.7866E-05	NaN	19.997	23	17	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	88319			65590	9748	54049	54103							0.0007878666935994261
YVNRLTTK	8	Unmodified	_YVNRLTTK_					0	0	0		tr|A0A7D6ZXW3|A0A7D6ZXW3_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_00735PE=3SV=1	tr|A0A7D6ZXW3|A0A7D6ZXW3_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_00735PE=3SV=1	tr|A0A7D6ZXW3|A0A7D6ZXW3_9CLOTSigma-70familyRNApolymerasesigmafactorOS=ClostridiumintestinaleOX=36845GN=HZF06_00735PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	497.7895812988281	2	497.787641	993.56073	-1.2056	-0.00060013	0.3714	0.00018488	-0.83419	-0.00041525	497.78782712812034	45.293	2.3345	42.254	41.971	44.306	-3.0385					103	44	5	0	0	0	0.38806	4	2290	2290;2323;2349;2362		90.37	8.0648	1	2858900			65591	35896	54050	54104	72201;72202;72203;72204	72201					0.06369162680118734
YVNVEVNTN	9	Unmodified	_YVNVEVNTN_					0	0	0		tr|A0A553SJ71|A0A553SJ71_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_16230PE=4SV=1	tr|A0A553SJ71|A0A553SJ71_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_16230PE=4SV=1	tr|A0A553SJ71|A0A553SJ71_NIACIUncharacterizedproteinOS=NialliacirculansOX=1397GN=CEQ21_16230PE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	525.2894897460938	2	526.256371	1050.49819	2.5287	0.0013307	1.2917	0.00067978	3.8204	0.0020105	526.2569716841259	107.78	0.38203	107.78	107.6	107.99	0					10	8	2	0	0	0	0.027441	1	12168	12168		25.574	1.0549	1	269050			65592	33467	54051	54105	72205	72205					-0.025040281787141794
YVPHLCLL	8	Unmodified	_YVPHLCLL_					0	0	0			REV__ENST00000309137.12_1_16:57188062-57188149:-|nuORF	REV__ENST00000309137.12_1_16:57188062-57188149:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	478.7931213378906	2	479.264956	956.515359	1.3389	0.00064166	3.8739	0.0018566	5.2128	0.0024983	479.2668771788408	103.16	0.71474	103.16	103.01	103.73	0					26	16	3	0	0	0	0.028476	1	11544	11544		24.504	6.1796	1	540930	+		65593	24320	54052	54106	72206	72206					0.03536220893374775
YVPLMLTLS	9	Unmodified	_YVPLMLTLS_					0	0	0			REV__ENST00000477970.1_1_1:44078891-44086093:+|nuORF	REV__ENST00000477970.1_1_1:44078891-44086093:+|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	517.798583984375	2	518.791004	1035.56745	-0.40127	-0.00020817	-3.2477	-0.0016849	-3.649	-0.0018931	518.7897326286042	100.7	0.69614	99.098	98.802	99.498	-1.6053					22	13	2	0	0	0	0.027462	1	6889	6889		26.796	0	1	51734	+		65594	26397	54053	54107	72207	72207					0.051093395164798494
YVPLMLTLS	9	Unmodified	_YVPLMLTLS_					0	0	0			REV__ENST00000477970.1_1_1:44078891-44086093:+|nuORF	REV__ENST00000477970.1_1_1:44078891-44086093:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		2	518.791004	1035.56745	-0.54637	-0.00028345	-2.0952	-0.001087	-2.6416	-0.0013704	518.7902126925319	99.727	0.59505	98.897	98.617	99.212	-0.83052	-0.10887	0.00014854	NaN	26.796	27	11	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	44985	+		65595	26397	54053	54107							0.051093395164798494
YVPLMLTLS	9	Unmodified	_YVPLMLTLS_					0	0	0			REV__ENST00000477970.1_1_1:44078891-44086093:+|nuORF	REV__ENST00000477970.1_1_1:44078891-44086093:+|nuORF	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	518.791004	1035.56745	-0.93403	-0.00048456	-1.9223	-0.00099727	-2.8563	-0.0014818	518.7896268838329	101.29	0.51587	99.023	98.838	99.354	-2.2665	0.016684	0.00032794	NaN	26.796	17	10	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	51571	+		65596	26397	54053	54107							0.051093395164798494
YVPPLPKVI	9	Unmodified	_YVPPLPKVI_					0	0	0			REV__ENSG00000123496|ENST00000243213|IL13RA2	REV__ENSG00000123496|ENST00000243213|IL13RA2	MULTI-MSMS	OvCa9_classI_Rep3	3	513.3280029296875	2	513.323328	1024.6321	1.1851	0.00060836	2.3203	0.0011911	3.5055	0.0017994	513.8246530993847	67.449	2.102	64.562	64.137	66.239	-2.8873					146	41	6	0	0	0	0.39645	5	2927	2891;2909;2915;2927;2933		52.299	9.8247	1	2025700	+		65597	18645	54054	54108	72208;72209;72210;72211;72212	72211					0.12077282384802857
YVPRAILV	8	Unmodified	_YVPRAILV_					0	0	0		ENSG00000196230|ENST00000327892|TUBB;ENSG00000137285|ENST00000259818|TUBB2B;ENSG00000137267|ENST00000333628|TUBB2A;ENST00000518096.1_1_8:30209523-30210210:+|nuORF;ENSG00000258947|ENST00000315491|TUBB3;ENST00000489942.1_1_6:3155224-3157697:-|nuORF	ENSG00000196230|ENST00000327892|TUBB;ENSG00000258947|ENST00000315491|TUBB3;ENST00000489942.1_1_6:3155224-3157697:-|nuORF	ENSG00000258947|ENST00000315491|TUBB3	MULTI-MSMS	OvCa99_classI_Rep5	1	465.7935791015625	2	465.792195	929.569838	1.9932	0.00092842	0.23633	0.00011008	2.2295	0.0010385	465.7921595132162	92.013	1.2149	92.013	91.711	92.926	0					75	28	4	0	0	0	0.66704	1	9941	9941		50.025	7.5501	1	7048400			65598	9485;8579;12689	54055	54109	72213	72213					0.10223556036464743
YVQDSKLIT	9	Unmodified	_YVQDSKLIT_					0	0	0		tr|A0A553SKI1|A0A553SKI1_NIACIDNApolymeraseIIIsubunitdeltaOS=NialliacirculansOX=1397GN=holAPE=4SV=1	tr|A0A553SKI1|A0A553SKI1_NIACIDNApolymeraseIIIsubunitdeltaOS=NialliacirculansOX=1397GN=holAPE=4SV=1	tr|A0A553SKI1|A0A553SKI1_NIACIDNApolymeraseIIIsubunitdeltaOS=NialliacirculansOX=1397GN=holAPE=4SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	532.7999877929688	2	533.792589	1065.57063	0.30636	0.00016353	-1.7421	-0.00092995	-1.4358	-0.00076641	533.7904841910772	101.87	0.59661	101.87	101.44	102.04	0					18	13	2	0	0	0	0.027462	1	11290	11290		26.693	15.827	1	126140			65599	33618	54056	54110	72214	72214					0.04046305894848956
YVQDSKLIT	9	Unmodified	_YVQDSKLIT_					0	0	0		tr|A0A553SKI1|A0A553SKI1_NIACIDNApolymeraseIIIsubunitdeltaOS=NialliacirculansOX=1397GN=holAPE=4SV=1	tr|A0A553SKI1|A0A553SKI1_NIACIDNApolymeraseIIIsubunitdeltaOS=NialliacirculansOX=1397GN=holAPE=4SV=1	tr|A0A553SKI1|A0A553SKI1_NIACIDNApolymeraseIIIsubunitdeltaOS=NialliacirculansOX=1397GN=holAPE=4SV=1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	533.792589	1065.57063	-1.4267	-0.00076157	-5.5744	-0.0029756	-7.0011	-0.0037372	533.7901428442036	103.76	1.2018	101.64	100.91	102.11	-2.1192	-0.11619	-0.0013293	NaN	24.519	34	22	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	29081			65600	33618	54056	54110							0.04046305894848956
YVQELRVW	8	Unmodified	_YVQELRVW_					0	0	0			REV__ENSG00000151835|ENST00000382292|SACS	REV__ENSG00000151835|ENST00000382292|SACS	MULTI-SECPEP	OvCa99_classI_Rep5	1	547.7610473632812	2	546.795466	1091.57638	-0.63582	-0.00034766	-3.3416	-0.0018272	-3.9774	-0.0021749	546.7935159078426	61.381	0.62608	61.381	61.2	61.826	0					40	14	5	0	0	0	0.028476	1	5394	5394		34.173	5.023	1	2375400	+		65601	20257	54057	54111	72215	72215					0.034254491971978496
YVQFMMDTV	9	2 Oxidation (M)	_YVQFM(Oxidation (M))M(Oxidation (M))DTV_		YVQFM(1)M(1)DTV		YVQFM(71)M(71)DTV	0	0	2		ENST00000361384.6_1_10:115612544-115612715:-|nuORF	ENST00000361384.6_1_10:115612544-115612715:-|nuORF	ENST00000361384.6_1_10:115612544-115612715:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep2	2	583.247802734375	2	583.248843	1164.48313	0.67489	0.00039363	-0.53763	-0.00031357	0.13726	8.0057E-05	583.2484035489165	130.41	1.8783	130.18	129.81	131.69	-0.22696					86	37	3	0	0	0	0.22961	1	12802	12802		71.296	23.638	1	516500			65602	10795	54058	54112	72216	72216		301;302			-0.09252979362577207
YVQRLKNNL	9	Unmodified	_YVQRLKNNL_					0	0	0		ENST00000523859.1_1_8:90768804-90769328:-|nuORF;ENST00000519655.6_1_8:90641459-90769328:-|nuORF;ENST00000504145.5_1_8:90737787-90769379:-|nuORF	ENST00000523859.1_1_8:90768804-90769328:-|nuORF	ENST00000523859.1_1_8:90768804-90769328:-|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	574.2542724609375	2	574.332747	1146.65094	-0.7774	-0.00044649	0.27072	0.00015548	-0.50669	-0.00029101	574.3328852948107	61.68	0.79449	61.68	61.2	61.994	0					34	18	3	0	0	0	0.027462	1	5458	5458		38.806	28.541	1	929680			65603	12873	54059	54113	72217	72217					0.08348212008581868
YVRDREVL	8	Unmodified	_YVRDREVL_					0	0	0			REV__ENSG00000137124|ENST00000377698|ALDH1B1	REV__ENSG00000137124|ENST00000377698|ALDH1B1	MULTI-MSMS	OvCa99_classI_Rep5	1	525.2918701171875	2	525.290548	1048.56654	-1.1415	-0.00059963	3.8084	0.0020005	2.6669	0.0014009	525.2924947334039	26.664	0.94838	26.664	26.442	27.39	0					35	18	3	0	0	0	0.66057	1	713	713		51.335	3.6781	1	200540	+		65604	19436	54060	54114	72218	72218					0.044202611917853574
YVRDREVL	8	Unmodified	_YVRDREVL_					0	0	0			REV__ENSG00000137124|ENST00000377698|ALDH1B1	REV__ENSG00000137124|ENST00000377698|ALDH1B1	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	525.290548	1048.56654	-1.1415	-0.00059963	3.8084	0.0020005	2.6669	0.0014009	525.2924947334039	26.664	0.94838	26.664	26.442	27.39	0	0	0	NaN	51.335	35	18	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	200540	+		65605	19436	54060	54114							0.044202611917853574
YVRKFVLMR	9	Unmodified	_YVRKFVLMR_					0	0	0		ENST00000597209.1_1_19:59063514-59065579:-|nuORF;ENSG00000130724|ENST00000312547|CHMP2A	ENST00000597209.1_1_19:59063514-59065579:-|nuORF	ENST00000597209.1_1_19:59063514-59065579:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	404.5754699707031	3	404.574233	1210.70087	0.66048	0.00026721	-0.7	-0.0002832	-0.039519	-1.5988E-05	404.5738917619255	68.054	1.0557	68.054	67.803	68.858	0					72	25	5	0	0	0	0.62352	1	6426	6426		29.17	2.1227	1	7472800			65606	4005	54061	54115	72219	72219					0.1039462341284434
YVRNKIRAAS	10	Unmodified	_YVRNKIRAAS_					0	0	0		nc|ENSG00000163738|Q9H903-3|MTHFD2L;nc|ENSG00000163738|Q9H903-1|MTHFD2L;nc|ENSG00000163738|Q9H903-5|MTHFD2L;ENSG00000163738|ENST00000325278|MTHFD2L	nc|ENSG00000163738|Q9H903-3|MTHFD2L	nc|ENSG00000163738|Q9H903-3|MTHFD2L	MULTI-MSMS	OvCa9_classI_Rep3	3	589.342529296875	2	589.343646	1176.67274	-5.1334	-0.0030254	3.8974	0.0022969	-1.236	-0.00072842	589.3458875467293	147.9	4.7582	146.95	145.55	150.31	-0.95119					365	94	6	0	0	0	0.75313	1	12463	12463		24.519	2.5593	1	589610			65607	6356	54062	54116	72220	72220					0.09147016757151505
YVRRWSRWFRK	11	Unmodified	_YVRRWSRWFRK_					0	0	0			REV__ENST00000496222.1_1_3:160156960-160167504:-|nuORF	REV__ENST00000496222.1_1_3:160156960-160167504:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep4_	4	547.3228759765625	3	547.307537	1638.90078	-0.4251	-0.00023266	3.14	0.0017185	2.7149	0.0014859	547.3090970303954	39.274	1.7521	36.348	35.75	37.502	-2.9264					85	34	3	0	0	0	0.026562	1	1606	1606		0	0	1	59114	+		65608	26534	54063	54117	72221	72221					0.1068881440480709
YVRRWSRWFRK	11	Unmodified	_YVRRWSRWFRK_					0	0	0			REV__ENST00000496222.1_1_3:160156960-160167504:-|nuORF	REV__ENST00000496222.1_1_3:160156960-160167504:-|nuORF	MULTI-MATCH	OvCa9_classI_Rep2	2		3	547.307537	1638.90078	-0.80236	-0.00043914	2.5227	0.0013807	1.7203	0.00094154	547.3087974669943	39.324	0.49495	36.614	36.261	36.755	-2.7097	0.13333	-0.00097582	NaN	5.6988	11	9	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	9985.2	+		65609	26534	54063	54117							0.1068881440480709
YVRTIINKN	9	Unmodified	_YVRTIINKN_					0	0	0		ENST00000398900.2_1_3:170371678-170371921:-|nuORF	ENST00000398900.2_1_3:170371678-170371921:-|nuORF	ENST00000398900.2_1_3:170371678-170371921:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	560.8285522460938	2	560.827298	1119.64004	-0.017605	-9.8733E-06	-0.92194	-0.00051705	-0.93955	-0.00052692	560.826858568463	70.307	3.5219	70.307	69.513	73.035	0					204	87	3	0	0	0	0.55588	1	6806	6806		37.159	0	1	81756000			65610	11376	54064	54118	72222	72222					0.08500809634278994
YVSLTYAD	8	Unmodified	_YVSLTYAD_					0	0	0		ENST00000489345.5_1_20:5990447-6004030:+|nuORF;ENST00000609154.1_1_20:5988006-5996237:+|nuORF;nc|ENSG00000088766|Q9UJA2-2|CRLS1;ENSG00000088766|ENST00000378863|CRLS1	ENST00000489345.5_1_20:5990447-6004030:+|nuORF	ENST00000489345.5_1_20:5990447-6004030:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	466.76483154296875	2	466.224008	930.433463	2.5206	0.0011752	1.7931	0.00083601	4.3138	0.0020112	466.2245945996511	76.004	0.20177	76.004	75.913	76.115	0					6	4	2	0	0	0	0.028476	1	7585	7585		30.504	0	1	139410			65611	12675	54065	54119	72223	72223					-0.034536029847231475
YVSNDLDVT	9	Unmodified	_YVSNDLDVT_					0	0	0			REV__ENST00000265537.7_1_3:45559419-45559458:+|nuORF	REV__ENST00000265537.7_1_3:45559419-45559458:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	512.2466430664062	2	513.242929	1024.47131	2.0291	0.0010414	-1.0951	-0.00056207	0.93395	0.00047934	513.242057465307	76.889	0.24388	76.889	76.678	76.922	0					7	5	2	0	0	0	0.027402	1	7718	7718		66.429	29.27	1	137700	+		65612	24031	54066	54120	72224	72224					-0.03995136789899334
YVSRPSHF	8	Unmodified	_YVSRPSHF_					0	0	0		nc|ENSG00000170581|P52630-4|STAT2;ENSG00000170581|ENST00000314128|STAT2;ENST00000556539.5_1_12:56737175-56743495:-|nuORF	nc|ENSG00000170581|P52630-4|STAT2	nc|ENSG00000170581|P52630-4|STAT2	MULTI-MSMS	OvCa99_classI_Rep5	1	496.7521667480469	2	496.751059	991.487565	-0.33465	-0.00016624	0.10762	5.346E-05	-0.22704	-0.00011278	496.7509489906515	56.315	1.3844	56.315	56.011	57.396	0					94	32	6	0	0	0	0.61436	1	4654	4654		60.972	3.1607	1	10672000			65613	7120	54067	54121	72225	72225					-0.00851966042478125
YVSYTSKENTV	11	Unmodified	_YVSYTSKENTV_					0	0	0		PIGA|p.C183Y|1|0.29|ENSG00000165195|chrX:15331383-15331383|C/T|missense_variant	PIGA|p.C183Y|1|0.29|ENSG00000165195|chrX:15331383-15331383|C/T|missense_variant	PIGA|p.C183Y|1|0.29|ENSG00000165195|chrX:15331383-15331383|C/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	645.8115234375	2	645.81425	1289.61395	-0.79265	-0.0005119	-2.8214	-0.0018221	-3.614	-0.002334	645.8123177961481	36.849	0.72896	36.849	36.662	37.391	0					36	15	4	0	0	0	0.22834	1	1969	1969		76.17	3.2904	1	735150			65614	15498	54068	54122	72226	72226					-0.0192754911852262
YVTNSKAFLY	10	Unmodified	_YVTNSKAFLY_					0	0	0			REV__nc|ENSG00000203668|Q9H1Y3-2|OPN3	REV__nc|ENSG00000203668|Q9H1Y3-2|OPN3	MULTI-MSMS	OvCa9_classI_Rep2	2	603.3126831054688	2	603.313689	1204.61282	0.62584	0.00037758	-0.40815	-0.00024624	0.21769	0.00013133	603.3133341526485	91.307	1.7928	90.071	89.795	91.588	-1.2355					106	33	4	0	0	0	0.44431	1	8094	8094		62.107	0	1	687170	+		65615	16699	54069	54123	72227	72227					0.0187028130321778
YVTQMAKKL	9	Oxidation (M)	_YVTQM(Oxidation (M))AKKL_		YVTQM(1)AKKL		YVTQM(42)AKKL	0	0	1			REV__nc|ENSG00000164815|O43913-2|ORC5	REV__nc|ENSG00000164815|O43913-2|ORC5	MULTI-MSMS	OvCa9_classI_Rep2	2	549.3030395507812	2	549.30481	1096.59507	1.1758	0.00064588	-4.2389	-0.0023285	-3.0631	-0.0016826	549.3023942887744	130.34	1.3411	130.11	129.86	131.2	-0.22696					43	26	3	0	0	0	0.50149	1	12822	12822		42.396	11.892	1	69053	+		65616	21021	54070	54124	72228	72228		489			0.05063242776714105
YVTSVILHI	9	Unmodified	_YVTSVILHI_					0	0	0		ENST00000570359.1_1_17:440266-440455:-|nuORF;nc|ENSG00000141252|Q5VIR6-2|VPS53;nc|ENSG00000141252|Q5VIR6-3|VPS53;nc|ENSG00000141252|Q5VIR6-1|VPS53;ENSG00000141252|ENST00000437048|VPS53	ENST00000570359.1_1_17:440266-440455:-|nuORF	ENST00000570359.1_1_17:440266-440455:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	522.8102416992188	2	522.808042	1043.60153	0.11562	6.045E-05	2.0159	0.0010539	2.1315	0.0011144	522.8089402779672	114.23	1.2851	114.23	113.97	115.25	0					48	27	4	0	0	0	0.0096355	2	13047	13024;13047		170.31	101.83	1	1328800			65617	4901	54071	54125	72229;72230	72230					0.08147503999771288
YVTTIWLLD	9	Unmodified	_YVTTIWLLD_					0	0	0		sp|F5H9Z4|UL20_HCMVMMembraneproteinUL20OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL20PE=3SV=1	sp|F5H9Z4|UL20_HCMVMMembraneproteinUL20OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL20PE=3SV=1	sp|F5H9Z4|UL20_HCMVMMembraneproteinUL20OS=Humancytomegalovirus(strainMerlin)OX=295027GN=UL20PE=3SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	562.3060913085938	2	562.305332	1122.59611	-0.082972	-4.6656E-05	0.97574	0.00054866	0.89276	0.00050201	562.305639625765	36.184	0.72575	36.184	35.892	36.618	0					35	15	4	0	0	0	0.6653	1	1891	1891		24.203	2.2429	1	438550			65618	32848	54072	54126	72231	72231					0.03971780417282389
YVVCPRVRSR	10	Unmodified	_YVVCPRVRSR_					0	0	0			REV__nc|ENSG00000215301|O00571-2|DDX3X	REV__nc|ENSG00000215301|O00571-2|DDX3X	MULTI-MSMS	OvCa9_classI_Rep3	3	412.2318115234375	3	412.232758	1233.67644	1.934	0.00079726	-4.4887	-0.0018504	-2.5547	-0.0010531	412.2308161483838	65.879	3.828	62.933	62.452	66.28	-2.9459					181	75	4	0	0	0	0.5635	1	2651	2651		46.457	20.565	1	1016400	+		65619	16827	54073	54127	72232	72232					0.06895363259332044
YVVCPRVRSR	10	Unmodified	_YVVCPRVRSR_					0	0	0			REV__nc|ENSG00000215301|O00571-2|DDX3X	REV__nc|ENSG00000215301|O00571-2|DDX3X	MULTI-MATCH-MSMS	OvCa9_classI_Rep4_	4		3	412.232758	1233.67644	0.34951	0.00014408	-2.9515	-0.0012167	-2.602	-0.0010726	412.2313741887276	66.556	1.8179	63.066	62.66	64.478	-3.4902	0.14033	0.0016667	NaN	46.457	114	36	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	630620	+		65620	16827	54073	54127							0.06895363259332044
YVVKLLQLI	9	Unmodified	_YVVKLLQLI_					0	0	0		nc|ENSG00000147364|Q8TCJ0|FBXO25;nc|ENSG00000147364|Q8TCJ0-3|FBXO25;ENSG00000147364|ENST00000350302|FBXO25	nc|ENSG00000147364|Q8TCJ0|FBXO25	nc|ENSG00000147364|Q8TCJ0|FBXO25	MULTI-MSMS	OvCa99_classI_Rep5	1	544.859130859375	2	544.857535	1087.70052	0.88088	0.00047995	1.7195	0.00093689	2.6004	0.0014168	544.8583363996131	139.6	0.51019	139.6	139.37	139.88	0					18	10	2	0	0	0	0.19716	1	16303	16303		76.847	0	1	115600			65621	15079	54074	54128	72233	72233					0.1601752696467429
YVVLGQFLV	9	Unmodified	_YVVLGQFLV_					0	0	0		ENST00000420029.1_1_1:174726080-174726215:-|nuORF;ENST00000524628.1_1_11:65770029-65771240:+|nuORF;ENSG00000175334|ENST00000312175|BANF1	ENST00000420029.1_1_1:174726080-174726215:-|nuORF	ENST00000420029.1_1_1:174726080-174726215:-|nuORF	MULTI-SECPEP	OvCa9_classI_Rep3	3	518.3192138671875	2	519.305136	1036.59572	-0.62816	-0.00032621	1.1305	0.00058706	0.50231	0.00026085	519.8067019771969	93.922	0.7649	91.96	91.78	92.545	-1.9617					23	14	2	0	0	0	0.027462	1	6058	6058		42.474	3.6683	1	20201			65622	7535	54075	54129	72234	72234					0.07888405488074568
YVVPFVAKV	9	Unmodified	_YVVPFVAKV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	OvCa99_classI_Rep5	1	511.31121826171875	2	511.307678	1020.6008	2.144	0.0010963	-0.19159	-9.7959E-05	1.9525	0.0009983	511.3073322151525	110.77	0.88873	110.77	110.4	111.29	0					47	19	4	0	0	0	0.19716	1	12569	12569		76.847	12.639	1	863920			65623	3691	54076	54130	72235	72235					0.09132709350706136
YVVPFVAKV	9	Unmodified	_YVVPFVAKV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MSMS	OvCa9_classI_Rep4_	4	511.3078918457031	2	511.307678	1020.6008	0.36019	0.00018417	-0.59072	-0.00030204	-0.23053	-0.00011787	511.30719787115453	111.39	0.73692	109.88	109.53	110.26	-1.5111					37	13	4	0	0	0	0.19716	2	10265	10265;10276		76.847	25.511	1	141480			65624	3691	54076	54130	72236;72237	72236					0.09132709350706136
YVVPFVAKV	9	Unmodified	_YVVPFVAKV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	511.307678	1020.6008	0.081189	4.1512E-05	-1.4129	-0.00072242	-1.3317	-0.00068091	511.30668989046217	110.11	1.1374	109.94	109.61	110.75	-0.17237	0.056988	-0.00043063	NaN	76.847	57	22	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	122980			65625	3691	54076	54130							0.09132709350706136
YVVPFVAKV	9	Unmodified	_YVVPFVAKV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	511.307678	1020.6008	1.4696	0.00075144	-5.1828	-0.00265	-3.7132	-0.0018986	511.3048358602842	111.55	0.84083	110.45	110.2	111.04	-1.1038	-0.13247	-0.0027117	NaN	76.847	34	16	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	34759			65626	3691	54076	54130							0.09132709350706136
YVVPFVAKV	9	Unmodified	_YVVPFVAKV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	511.307678	1020.6008	0.9073	0.00046391	-1.299	-0.00066421	-0.39174	-0.0002003	511.306857963937	110.93	0.65191	109.83	109.6	110.25	-1.1038	-0.051769	-0.00031422	NaN	76.847	34	12	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	134380			65627	3691	54076	54130							0.09132709350706136
YVVPFVAKV	9	Unmodified	_YVVPFVAKV_					0	0	0		nc|ENSG00000125107|A5YKK6-2|CNOT1;ENSG00000125107|ENST00000317147|CNOT1;nc|ENSG00000125107|A5YKK6-3|CNOT1;nc|ENSG00000125107|A5YKK6-4|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	nc|ENSG00000125107|A5YKK6-2|CNOT1	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	511.307678	1020.6008	0.13212	6.7553E-05	-4.2655	-0.002181	-4.1334	-0.0021134	511.30544258751087	112.03	0.83335	110.52	110.26	111.1	-1.5111	-0.057853	-0.0017736	NaN	76.847	28	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	48641			65628	3691	54076	54130							0.09132709350706136
YVWNVEVY	8	Unmodified	_YVWNVEVY_					0	0	0		nc|ENSG00000075702|O43379-2|WDR62;WDR62|p.E520Gfs*10|1|0.1|ENSG00000075702|chr19:36084657-36084670|CACGAGCTGCACTT/-|frameshift_variant;nc|ENSG00000075702|O43379|WDR62;ENSG00000075702|ENST00000401500|WDR62	nc|ENSG00000075702|O43379-2|WDR62	nc|ENSG00000075702|O43379-2|WDR62	MULTI-MSMS	OvCa9_classI_Rep2	2	536.2593383789062	2	536.260925	1070.5073	-1.821	-0.00097655	-3.0664	-0.0016444	-4.8874	-0.0026209	536.2591895104723	85.72	2.0297	84.229	83.752	85.781	-1.4906					113	39	4	0	0	0	0.56195	1	7423	7423		71.296	7.0884	1	557560			65629	1540	54077	54131	72238	72238					-0.025136348223895766
YVYGNQLGNA	10	Unmodified	_YVYGNQLGNA_					0	0	0			REV__ENSG00000128203|ENST00000215906|ASPHD2	REV__ENSG00000128203|ENST00000215906|ASPHD2	MULTI-MSMS	OvCa99_classI_Rep5	1	549.7633056640625	2	549.764363	1097.51417	1.0082	0.00055426	0.36375	0.00019998	1.3719	0.00075424	549.7642897467599	149.63	2.5698	149.63	149.31	151.88	0					74	51	2	0	0	0	0.46756	1	17489	17489		58.782	7.5893	1	363850	+		65630	18844	54078	54132	72239	72239					-0.03068321941805152
YVYIKDQQI	9	Unmodified	_YVYIKDQQI_					0	0	0			REV__tr|A0A553SPG2|A0A553SPG2_NIACIDUF3993domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26290PE=4SV=1	REV__tr|A0A553SPG2|A0A553SPG2_NIACIDUF3993domain-containingproteinOS=NialliacirculansOX=1397GN=CEQ21_26290PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	585.3120727539062	2	585.313689	1168.61282	0.78646	0.00046033	-4.4578	-0.0026092	-3.6713	-0.0021489	585.3106281811599	156.73	2.6681	156.73	155.84	158.51	0					109	53	4	0	0	0	0.31747	1	18340	18340		60.972	4.2509	1	172620	+		65631	30533	54079	54133	72240	72240					0.035262813032204576
YWDLQGQN	8	Unmodified	_YWDLQGQN_					0	0	0			REV__ENSG00000108839|ENST00000251535|ALOX12	REV__ENSG00000108839|ENST00000251535|ALOX12	MULTI-SECPEP	OvCa9_classI_Rep2	2	511.7860107421875	2	512.230156	1022.44576	-0.11465	-5.8729E-05	4.0063	0.0020521	3.8916	0.0019934	512.2318723420707	114.67	0.88848	114.55	114.26	115.14	-0.11777					46	17	5	0	0	0	0.028476	1	10941	10941		55.504	16.251	1	48135	+		65632	17906	54080	54134	72241	72241					-0.06456566521660534
YWHELKLI	8	Unmodified	_YWHELKLI_					0	0	0			REV__ENST00000493232.5_1_7:2582650-2582974:-|nuORF	REV__ENST00000493232.5_1_7:2582650-2582974:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	551.3070678710938	2	551.30821	1100.60187	0.74667	0.00041165	-3.1185	-0.0017193	-2.3718	-0.0013076	551.3062166195767	132.51	0.71185	132.51	132.18	132.89	0					30	14	3	0	0	0	0.67745	1	15393	15393		47.916	0.25827	1	219890	+		65633	26700	54081	54135	72242	72242					0.055589237196272734
YWHELKLI	8	Unmodified	_YWHELKLI_					0	0	0			REV__ENST00000493232.5_1_7:2582650-2582974:-|nuORF	REV__ENST00000493232.5_1_7:2582650-2582974:-|nuORF	MULTI-MATCH-MSMS	OvCa99_classI_Rep5	1		2	551.30821	1100.60187	0.74667	0.00041165	-3.1185	-0.0017193	-2.3718	-0.0013076	551.3062166195767	132.51	0.71185	132.51	132.18	132.89	0	0	0	NaN	47.916	30	14	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	219890	+		65634	26700	54081	54135							0.055589237196272734
YWIDIQLRW	9	Unmodified	_YWIDIQLRW_					0	0	0		PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant;PRPF8|p.Q2065Hfs*8|1|0.04|ENSG00000174231|chr17:1653809-1653810|-/G|frameshift_variant;ENSG00000174231|ENST00000304992|PRPF8;PRPF8|p.Q1835Afs*4|1|0.07|ENSG00000174231|chr17:1658255-1658256|-/C|frameshift_variant;PRPF8|p.F1684Dfs*30|1|0.07|ENSG00000174231|chr17:1659445-1659446|-/AAGTCAGGAGATCGAGACCATC|frameshift_variant;PITPNA-PRPF8|1|fusion	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant;PITPNA-PRPF8|1|fusion	PRPF8|p.D1922Afs*17|1|0.05|ENSG00000174231|chr17:1656420-1656420|T/-|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	647.349365234375	2	646.842948	1291.67134	1.7052	0.001103	0.66851	0.00043242	2.3738	0.0015354	646.8430368267133	148.83	2.2171	148.83	148.32	150.54	0					90	44	3	0	0	0	0.51865	1	17413	17413		40.778	0.71999	1	190100			65635	7449;15503	54082	54136	72243	72243					0.0371738266835564
YWKMWKRFERD	11	Unmodified	_YWKMWKRFERD_					0	0	0			REV__ENSG00000104885|ENST00000398665|DOT1L	REV__ENSG00000104885|ENST00000398665|DOT1L	MULTI-SECPEP	OvCa99_classI_Rep5	1	548.30908203125	3	548.941644	1643.8031	1.1542	0.00063356	-2.496	-0.0013702	-1.3419	-0.00073662	548.9402714015531	146.62	0.44078	146.62	146.38	146.82	0					24	8	4	0	0	0	0.026534	1	17154	17154		6.001	0	1	123890	+		65636	17692	54083	54137	72244	72244					0.00695244693793029
YWMHVQNTF	9	Unmodified	_YWMHVQNTF_					0	0	0		nc|ENSG00000114796|Q6TFL4-2|KLHL24;ENSG00000114796|ENST00000242810|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	MSMS	OvCa99_classI_Rep5	1	613.279052734375	2	613.276583	1224.53861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.18	1	100.18	99.681	100.68	0								0	0	0	0.017986	1	11098	11098		133.81	48.897	1				65637	3042	54084	54138	72245	72245					-0.06467385059931985
YWMHVQNTF	9	Unmodified	_YWMHVQNTF_					0	0	0		nc|ENSG00000114796|Q6TFL4-2|KLHL24;ENSG00000114796|ENST00000242810|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	nc|ENSG00000114796|Q6TFL4-2|KLHL24	MSMS	OvCa99_classI_Rep5	1	613.2788696289062	2	613.276583	1224.53861	NaN	NaN	NaN	NaN	NaN	NaN	NaN	100.35	1	100.35	99.853	100.85	0								0	0	0	5.1212E-14	1	11122	11122		201.49	89.84	1				65638	3042	54084	54138	72246	72246					-0.06467385059931985
YWPDVIHSF	9	Unmodified	_YWPDVIHSF_					0	0	0		ENSG00000026297|ENST00000508775|RNASET2;ENST00000496851.6_1_6:167347386-167366008:-|nuORF;ENST00000499370.6_1_6:167347461-167366008:-|nuORF;ENST00000358165.7_1_6:167352234-167370622:-|nuORF;ENST00000028008.9_1_6:167343078-167365992:-|nuORF	ENSG00000026297|ENST00000508775|RNASET2	ENSG00000026297|ENST00000508775|RNASET2	MULTI-MSMS	OvCa99_classI_Rep5	1	582.2808227539062	2	582.279649	1162.54475	1.2832	0.00074718	0.0023087	1.3443E-06	1.2855	0.00074852	582.2797365135655	126.98	0.67256	126.98	126.69	127.36	0					30	14	3	0	0	0	0.31747	1	14698	14698		60.972	15	1	902680			65639	1050	54085	54139	72247	72247					-0.030025435567722525
YWPSPEEP	8	Unmodified	_YWPSPEEP_					0	0	0		nc|ENSG00000254838|Q7Z2Y8|GVINP1	nc|ENSG00000254838|Q7Z2Y8|GVINP1	nc|ENSG00000254838|Q7Z2Y8|GVINP1	MULTI-SECPEP	OvCa99_classI_Rep5	1	503.2586975097656	2	502.721633	1003.42871	0.48696	0.00024481	-0.6182	-0.00031078	-0.13124	-6.5979E-05	502.72116214932265	66.808	0.39544	66.808	66.619	67.014	0					14	9	2	0	0	0	0.028476	1	6212	6212		28.254	11.781	1	178710			65640	15353	54086	54140	72248	72248					-0.07286487127475993
YWPVIPLKF	9	Unmodified	_YWPVIPLKF_					0	0	0		ENSG00000046647|ENST00000680255|GEMIN8	ENSG00000046647|ENST00000680255|GEMIN8	ENSG00000046647|ENST00000680255|GEMIN8	MULTI-MSMS	OvCa99_classI_Rep5	1	581.8380126953125	2	581.836603	1161.65865	1.0271	0.00059762	1.6875	0.00098186	2.7146	0.0015795	581.837381861686	147.09	0.68666	147.09	146.82	147.5	0					31	13	3	0	0	0	0.44294	1	17203	17203		47.916	9.1095	1	213580			65641	1135	54087	54141	72249	72249					0.08428971276134689
YWRRREEEERW	11	Unmodified	_YWRRREEEERW_					0	0	0		ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	ENSG00000056097|ENST00000265069|ZFR	MULTI-MSMS	OvCa99_classI_Rep5	1	565.6091918945312	3	565.609722	1693.80734	0.21219	0.00012002	0.15514	8.7751E-05	0.36733	0.00020777	565.60993536503	30.479	1.5212	30.479	30.236	31.757	0					59	30	4	0	0	0	0.72582	1	1190	1190		1.523	1.1516	1	152290			65642	1227	54088	54142	72250	72250					-0.011815745589046855
YYACAAQLAFF	11	Unmodified	_YYACAAQLAFF_					0	0	0		ENSG00000181752|ENST00000313447|OR8K5	ENSG00000181752|ENST00000313447|OR8K5	ENSG00000181752|ENST00000313447|OR8K5	MULTI-MSMS	OvCa99_classI_Rep5	1	634.2938232421875	2	634.294442	1266.57433	2.145	0.0013606	-3.1501	-0.0019981	-1.0051	-0.0006375	634.2924456857803	128.18	1.3839	128.18	127.32	128.7	0					90	29	6	0	0	0	0.68263	1	14860	14860		35.618	2.8678	1	1168200			65643	7951	54089	54143	72251	72251					-0.04829347602958478
YYAEVETRI	9	Unmodified	_YYAEVETRI_					0	0	0		ENSG00000112685|ENST00000230449|EXOC2;EXOC2-GMDS|1|fusion	ENSG00000112685|ENST00000230449|EXOC2	ENSG00000112685|ENST00000230449|EXOC2	MULTI-MSMS	OvCa99_classI_Rep5	1	572.2886352539062	2	572.287671	1142.56079	2.0533	0.0011751	0.059038	3.3787E-05	2.1123	0.0012089	572.287525976197	79.892	1.5355	79.892	79.585	81.12	0					77	36	3	0	0	0	0.075543	1	8158	8158		104.06	47.336	1	3349100			65644	2918	54090	54144	72252	72252					-0.004788821105421448
YYAIGMCAMFV	11	Unmodified	_YYAIGMCAMFV_					0	0	0		tr|A0A553SFQ5|A0A553SFQ5_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09335PE=4SV=1	tr|A0A553SFQ5|A0A553SFQ5_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09335PE=4SV=1	tr|A0A553SFQ5|A0A553SFQ5_NIACIABCtransporterpermeaseOS=NialliacirculansOX=1397GN=CEQ21_09335PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	423.5242614746094	3	423.521929	1267.54396	2.4275	0.0010281	2.9712	0.0012584	5.3987	0.0022865	423.5231709254311	60.915	1.0795	57.847	57.603	58.682	-3.0685					37	29	3	0	0	0	0.7246	1	2119	2119		20.837	0.80668	1	20392			65645	33065	54091	54145	72253	72253					-0.07911165584005175
YYAKEIHKF	9	Unmodified	_YYAKEIHKF_					0	0	0		nc|ENSG00000119699|P10600-2|TGFB3;ENSG00000119699|ENST00000238682|TGFB3	nc|ENSG00000119699|P10600-2|TGFB3	nc|ENSG00000119699|P10600-2|TGFB3	MULTI-MSMS	OvCa99_classI_Rep5	1	400.2137451171875	3	400.213358	1197.61824	1.1751	0.00047029	-0.81476	-0.00032608	0.36035	0.00014422	400.21295855185355	47.574	1.1618	47.574	47.294	48.455	0					69	26	4	0	0	0	0.066102	2	3443	3421;3443		109.48	49.36	1	5745800			65646	3385	54092	54146	72254;72255	72255					0.02734004885678587
YYAKEIHKF	9	Unmodified	_YYAKEIHKF_					0	0	0		nc|ENSG00000119699|P10600-2|TGFB3;ENSG00000119699|ENST00000238682|TGFB3	nc|ENSG00000119699|P10600-2|TGFB3	nc|ENSG00000119699|P10600-2|TGFB3	MULTI-MSMS	OvCa99_classI_Rep5	1	599.8169555664062	2	599.816399	1197.61824	-0.094977	-5.6969E-05	0.068384	4.1018E-05	-0.026593	-1.5951E-05	599.8161795538703	47.545	1.0783	47.545	47.294	48.372	0					64	24	5	0	0	0	0.12184	1	3428	3428		65.465	40.946	1	1644400			65647	3385	54092	54146	72256	72256					0.02734004885678587
YYDKHFTEF	9	Unmodified	_YYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	OvCa99_classI_Rep5	1	625.2811279296875	2	625.279846	1248.54514	0.3708	0.00023185	-0.044603	-2.7889E-05	0.32619	0.00020396	625.2798020157537	73.887	2.5157	73.887	73.52	76.036	0					208	63	6	0	0	0	0.0084406	6	7276	7249;7276;7306;7340;7376;7404		162.25	110.92	1	64818000			65648	3029	54093	54147	72257;72258;72259;72260;72261;72262	72258					-0.06919168627587169
YYDKHFTEF	9	Unmodified	_YYDKHFTEF_					0	0	0		nc|ENSG00000114573|P38606-2|ATP6V1A;ENSG00000114573|ENST00000273398|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	nc|ENSG00000114573|P38606-2|ATP6V1A	MULTI-MSMS	OvCa99_classI_Rep5	1	417.1900329589844	3	417.188989	1248.54514	0.96171	0.00040121	-0.66186	-0.00027612	0.29985	0.00012509	417.18866122248454	73.867	1.9628	73.867	73.56	75.523	0					139	49	5	0	0	0	0.35694	3	7254	7254;7282;7316		56.434	16.561	1	19637000			65649	3029	54093	54147	72263;72264;72265	72263					-0.06919168627587169
YYDPKHVIF	9	Unmodified	_YYDPKHVIF_					0	0	0		nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000468892.5_1_3:183907488-183910505:+|nuORF;ENST00000473311.5_1_3:183906074-183911483:+|nuORF	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	MULTI-MSMS	OvCa99_classI_Rep5	1	591.3032836914062	2	591.303124	1180.5917	2.0559	0.0012157	0.3123	0.00018466	2.3682	0.0014003	591.3030979533436	85.222	0.94743	85.222	84.923	85.87	0					46	22	4	0	0	0	0.28934	1	8934	8934		64.207	18.235	1	3113900			65650	6124	54094	54148	72266	72266					0.008623159943681458
YYDPKHVIF	9	Unmodified	_YYDPKHVIF_					0	0	0		nc|ENSG00000161204|Q9NUQ8-2|ABCF3;ENSG00000161204|ENST00000429586|ABCF3;ENST00000468892.5_1_3:183907488-183910505:+|nuORF;ENST00000473311.5_1_3:183906074-183911483:+|nuORF	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	nc|ENSG00000161204|Q9NUQ8-2|ABCF3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	591.303124	1180.5917	-1.4919	-0.00088219	-6.902	-0.0040812	-8.3939	-0.0049633	591.2992480564677	87.469	0.25761	85.292	85.19	85.447	-2.1768	0.035225	-0.0078388	NaN	64.207	7	4	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	15273			65651	6124	54094	54148							0.008623159943681458
YYEEQHPEL	9	Unmodified	_YYEEQHPEL_					0	0	0		nc|ENSG00000008517|P24001-5|IL32;nc|ENSG00000008517|P24001-3|IL32;nc|ENSG00000008517|P24001-6|IL32;ENSG00000008517|ENST00000525643|IL32;nc|ENSG00000008517|P24001|IL32;IL32|p.V135Sfs*24|1|0.23|ENSG00000008517|chr16:3069051-3069052|-/GAGTGCTT|frameshift_variant;nc|ENSG00000008517|P24001-4|IL32	nc|ENSG00000008517|P24001-5|IL32	nc|ENSG00000008517|P24001-5|IL32	MULTI-MSMS	OvCa99_classI_Rep5	1	604.2686157226562	2	604.266936	1206.51932	-0.42823	-0.00025877	0.22823	0.00013791	-0.2	-0.00012086	604.2670559254493	68.211	2.3693	68.211	67.916	70.286	0					166	57	6	0	0	0	0.0087163	3	6436	6408;6436;6467		209.84	130.13	1	45103000			65652	923	54095	54149	72267;72268;72269	72268					-0.07568062869859205
YYEHVKARF	9	Unmodified	_YYEHVKARF_					0	0	0		nc|ENSG00000115648|Q9BV36-5|MLPH;nc|ENSG00000115648|Q9BV36-3|MLPH;nc|ENSG00000115648|Q9BV36-2|MLPH;ENSG00000115648|ENST00000264605|MLPH;ENST00000468178.5_1_2:238402069-238454213:+|nuORF;nc|ENSG00000115648|Q9BV36-4|MLPH;ENST00000469619.5_1_2:238402069-238419788:+|nuORF	nc|ENSG00000115648|Q9BV36-5|MLPH	nc|ENSG00000115648|Q9BV36-5|MLPH	MULTI-MSMS	OvCa99_classI_Rep5	1	404.877197265625	3	404.876857	1211.60874	0.92304	0.00037372	-0.88964	-0.0003602	0.033395	1.3521E-05	404.87640059875	47.874	1.0361	47.874	47.465	48.501	0					55	23	5	0	0	0	0.37135	1	3482	3482		54.776	16.965	1	1815600			65653	3115	54096	54150	72270	72270					0.011402366001675546
YYEKLHTYF	9	Unmodified	_YYEKLHTYF_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4;ITGB4|p.D539*|1|0.13|ENSG00000132470|chr17:75733648-75733649|-/C|frameshift_variant;ITGB4|p.L550Ifs*220|1|0.07|ENSG00000132470|chr17:75733682-75733683|-/AT|frameshift_variant	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	OvCa99_classI_Rep5	1	632.3082885742188	2	632.305864	1262.59717	2.5272	0.001598	-0.14432	-9.1251E-05	2.3829	0.0015067	632.3056538271693	79.843	1.1931	79.843	79.509	80.702	0					82	28	5	0	0	0	0.03923	2	8152	8152;8183		127.46	71.957	1	5266300			65654	4140	54097	54151	72271;72272	72271					-0.023620052138085157
YYEKLHTYF	9	Unmodified	_YYEKLHTYF_					0	0	0		nc|ENSG00000132470|P16144-4|ITGB4;nc|ENSG00000132470|P16144-2|ITGB4;nc|ENSG00000132470|P16144-3|ITGB4;ENSG00000132470|ENST00000200181|ITGB4;ENST00000580542.5_1_17:73720783-73737087:+|nuORF;nc|ENSG00000132470|P16144-5|ITGB4;ITGB4|p.D539*|1|0.13|ENSG00000132470|chr17:75733648-75733649|-/C|frameshift_variant;ITGB4|p.L550Ifs*220|1|0.07|ENSG00000132470|chr17:75733682-75733683|-/AT|frameshift_variant	nc|ENSG00000132470|P16144-4|ITGB4	nc|ENSG00000132470|P16144-4|ITGB4	MULTI-MSMS	OvCa99_classI_Rep5	1	421.8736877441406	3	421.873001	1262.59717	2.4241	0.0010227	0.029552	1.2467E-05	2.4537	0.0010351	421.8729440994746	79.849	0.72858	79.849	79.585	80.314	0					33	17	3	0	0	0	0.40667	1	8167	8167		77.318	38.564	1	1051600			65655	4140	54097	54151	72273	72273					-0.023620052138085157
YYEKQFPEI	9	Unmodified	_YYEKQFPEI_					0	0	0		nc|ENSG00000141027|O75376-2|NCOR1;ENSG00000141027|ENST00000268712|NCOR1;nc|ENSG00000141027|O75376-3|NCOR1;NCOR1|p.K1319Lfs*17|1|0.08|ENSG00000141027|chr17:16071606-16071607|-/CATGCAGTGTGGACCTAAG|frameshift_variant;nc|ENSG00000196498|Q9Y618-5|NCOR2;nc|ENSG00000196498|Q9Y618-4|NCOR2;ENSG00000196498|ENST00000405201|NCOR2;NCOR2|p.V700Afs*10|1|0.12|ENSG00000196498|chr12:124378305-124378306|-/TACAAAGTCAAAAGTAGTG|frameshift_variant	nc|ENSG00000141027|O75376-2|NCOR1;nc|ENSG00000196498|Q9Y618-5|NCOR2	nc|ENSG00000141027|O75376-2|NCOR1	MULTI-MSMS	OvCa99_classI_Rep5	1	608.7996826171875	2	608.797872	1215.58119	1.963	0.0011951	0.19644	0.00011959	2.1595	0.0013147	608.7979136743259	92.11	1.4681	92.11	91.837	93.305	0					76	34	3	0	0	0	0.029147	1	9943	9943		136.27	40.078	1	8683500			65656	4891;8615	54098	54152	72274	72274					-0.017977114506948055
YYEYNHDLF	9	Unmodified	_YYEYNHDLF_					0	0	0		ENSG00000151748|ENST00000324679|SAV1	ENSG00000151748|ENST00000324679|SAV1	ENSG00000151748|ENST00000324679|SAV1	MULTI-MSMS	OvCa99_classI_Rep5	1	632.2674560546875	2	632.269478	1262.5244	2.4472	0.0015473	0.056952	3.6009E-05	2.5041	0.0015833	632.2693712160333	97.031	0.72644	97.031	96.753	97.479	0					47	16	4	0	0	0	0.1804	1	10639	10639		79.713	7.8351	1	2108300			65657	5582	54099	54153	72275	72275					-0.09635759007255729
YYFDSYAHF	9	Unmodified	_YYFDSYAHF_					0	0	0		nc|ENSG00000126457|Q99873-2|PRMT1;nc|ENSG00000126457|Q99873-3|PRMT1;ENSG00000126457|ENST00000454376|PRMT1;nc|ENSG00000126457|Q99873-5|PRMT1;ENST00000525616.1_1_19:50180537-50188241:+|nuORF;nc|ENSG00000111218|Q9NR22-2|PRMT8;ENSG00000111218|ENST00000382622|PRMT8;ENST00000261252.4_1_12:3649876-3661973:+|nuORF;ENST00000543701.5_1_12:3600779-3659332:+|nuORF	nc|ENSG00000126457|Q99873-2|PRMT1	nc|ENSG00000126457|Q99873-2|PRMT1	MULTI-MSMS	OvCa99_classI_Rep5	1	606.7547607421875	2	606.753464	1211.49238	2.2442	0.0013617	-0.53259	-0.00032315	1.7116	0.0010385	606.752868784088	112.9	0.63194	112.9	112.61	113.24	0					36	13	4	0	0	0	0.17908	1	12864	12864		79.939	40.686	1	482450			65658	3781	54100	54154	72276	72276					-0.104911266903855
YYFEGIKQTF	10	Unmodified	_YYFEGIKQTF_					0	0	0		ENSG00000100591|ENST00000216479|AHSA1;ENST00000556369.1_3_14:77935388-77935589:+|nuORF;FRMD8-AHSA1|1|fusion	ENSG00000100591|ENST00000216479|AHSA1	ENSG00000100591|ENST00000216479|AHSA1	MULTI-MSMS	OvCa99_classI_Rep5	1	648.3190307617188	2	648.318971	1294.62339	2.8425	0.0018429	-0.99447	-0.00064473	1.8481	0.0011981	648.3182908410417	107.86	1.5741	107.86	107.31	108.89	0					80	36	4	0	0	0	0.010439	2	12186	12161;12186		159.28	92.058	1	5710500			65659	2086	54101	54155	72277;72278	72278					-0.012137360423594146
YYFENVLII	9	Unmodified	_YYFENVLII_					0	0	0			REV__ZNF280C|p.M292I|1|0.15|ENSG00000056277|chrX:130230623-130230623|C/T|missense_variant	REV__ZNF280C|p.M292I|1|0.15|ENSG00000056277|chrX:130230623-130230623|C/T|missense_variant	MULTI-SECPEP	OvCa99_classI_Rep5	1	587.7398071289062	2	587.313158	1172.61176	0.67035	0.00039371	-1.1063	-0.00064973	-0.43592	-0.00025602	587.3136869580147	141.9	0.34879	141.9	141.64	141.98	0					8	6	2	0	0	0	0.027462	1	16581	16581		31.955	2.8053	1	13385	+		65660	32774	54102	54156	72279	72279					0.03236066934346127
YYFILLTL	8	Unmodified	_YYFILLTL_					0	0	0			REV__ENSG00000186815|ENST00000335509|TPCN1	REV__ENSG00000186815|ENST00000335509|TPCN1	MSMS	OvCa9_classI_Rep4_	4	523.30322265625	2	523.302062	1044.58957	NaN	NaN	NaN	NaN	NaN	NaN	NaN	140.4	1	138.91	138.41	139.41	-1.4952								0	0	0	0.30129	1	13700	13700		29.842	1.9593	1		+		65661	22613	54103	54157	72280	72280					0.06905887256561982
YYFKANVFF	9	Unmodified	_YYFKANVFF_					0	0	0		ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	ENSG00000111229|ENST00000228825|ARPC3	MSMS	OvCa99_classI_Rep5	1	599.8009033203125	2	599.800217	1197.58588	NaN	NaN	NaN	NaN	NaN	NaN	NaN	124.67	1	124.67	124.17	125.17	0								0	0	0	0.17575	1	14393	14393		40.573	0.51445	1				65662	2813	54104	54158	72281	72281					-0.00500782517292464
YYFPVKNVI	9	Unmodified	_YYFPVKNVI_					0	0	0		ENSG00000189091|ENST00000302516|SF3B3;nc|ENSG00000189091|Q15393-3|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	ENSG00000189091|ENST00000302516|SF3B3	MULTI-MSMS	OvCa99_classI_Rep5	1	571.8170166015625	2	571.815867	1141.61718	1.5414	0.00088141	0.4139	0.00023668	1.9553	0.0011181	571.8159972588815	112.39	1.9102	112.39	111.38	113.29	0					80	41	5	0	0	0	0.14739	2	12785	12785;12809		85.359	15.732	1	2396300			65663	8533	54105	54159	72282;72283	72282					0.052037905167935605
YYGPLRSV	8	Unmodified	_YYGPLRSV_					0	0	0		nc|ENSG00000112081|P84103-2|SRSF3;ENSG00000112081|ENST00000373715|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	nc|ENSG00000112081|P84103-2|SRSF3	MULTI-MSMS	OvCa99_classI_Rep5	1	477.75701904296875	2	477.75581	953.497067	2.4464	0.0011688	-0.21037	-0.0001005	2.236	0.0010683	477.7554896386054	76.152	0.49145	76.152	75.913	76.405	0					20	11	2	0	0	0	0.66057	1	7622	7622		51.335	14.176	1	664610			65664	2876	54106	54160	72284	72284					0.018458022430536403
YYHGPSCQV	9	Unmodified	_YYHGPSCQV_					0	0	0			REV__ENSG00000146197|ENST00000274938|SCUBE3	REV__ENSG00000146197|ENST00000274938|SCUBE3	MULTI-SECPEP	OvCa99_classI_Rep5	1	527.7655029296875	2	527.226559	1052.43857	1.8831	0.00099284	2.3988	0.0012647	4.2819	0.0022576	527.2275934823198	76.703	0.68808	76.703	76.48	77.168	0					31	16	3	0	0	0	0.027462	1	7693	7693		34.173	9.6534	1	881260	+		65665	19998	54107	54161	72285	72285					-0.08555622393737394
YYHGPSCQV	9	Unmodified	_YYHGPSCQV_					0	0	0			REV__ENSG00000146197|ENST00000274938|SCUBE3	REV__ENSG00000146197|ENST00000274938|SCUBE3	MULTI-MATCH	OvCa9_classI_Rep3	3		2	527.226559	1052.43857	-0.41144	-0.00021692	2.8716	0.001514	2.4602	0.0012971	527.2279302295217	79.279	0.80514	76.939	76.657	77.463	-2.3399	-0.0010726	0.00016721	NaN	19.997	22	15	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	20797	+		65666	19998	54107	54161							-0.08555622393737394
YYHGPSCQV	9	Unmodified	_YYHGPSCQV_					0	0	0			REV__ENSG00000146197|ENST00000274938|SCUBE3	REV__ENSG00000146197|ENST00000274938|SCUBE3	MULTI-MATCH	OvCa9_classI_Rep4_	4		2	527.226559	1052.43857	-1.2417	-0.00065466	3.3481	0.0017652	2.1064	0.0011105	527.2279904172265	79.93	0.63641	77.178	76.938	77.575	-2.7514	0.23834	0.00066962	NaN	19.997	18	12	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	50397	+		65667	19998	54107	54161							-0.08555622393737394
YYHSFGVT	8	Unmodified	_YYHSFGVT_					0	0	0		ENSG00000135697|ENST00000258168|BCO1	ENSG00000135697|ENST00000258168|BCO1	ENSG00000135697|ENST00000258168|BCO1	MULTI-MSMS	OvCa99_classI_Rep5	1	487.2237243652344	2	487.224342	972.434132	-0.49543	-0.00024139	0.41311	0.00020128	-0.082318	-4.0107E-05	487.22447933688323	41.308	0.66179	41.308	41.104	41.766	0					35	14	4	0	0	0	0.60486	1	2567	2567		62.978	8.2138	1	858310			65668	4402	54108	54162	72286	72286					-0.05318763544983085
YYIDKLEYL	9	Unmodified	_YYIDKLEYL_					0	0	0		ENSG00000173848|ENST00000355029|NET1;nc|ENSG00000173848|Q7Z628-2|NET1;ENST00000484741.1_1_10:5496419-5498268:+|nuORF	ENSG00000173848|ENST00000355029|NET1	ENSG00000173848|ENST00000355029|NET1	MULTI-MSMS	OvCa99_classI_Rep5	1	610.3178100585938	2	610.315897	1218.61724	1.0633	0.00064894	1.3432	0.00081981	2.4065	0.0014687	610.3165738329772	114.91	1.9924	114.91	114.51	116.51	0					118	42	5	0	0	0	0.013371	3	13118	13118;13143;13166		158.07	90.581	1	5348800			65669	7421	54109	54163	72287;72288;72289	72287					0.016677457261494055
YYIFIIIMLLL	11	Unmodified	_YYIFIIIMLLL_					0	0	0		ENST00000299612.11_1_17:19286554-19286854:+|nuORF	ENST00000299612.11_1_17:19286554-19286854:+|nuORF	ENST00000299612.11_1_17:19286554-19286854:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep3	3	472.2823486328125	3	472.285466	1413.83457	-6.0448	-0.0028549	2.4317	0.0011484	-3.6131	-0.0017064	472.28675973301637	159.08	3.3809	157.81	156.71	160.09	-1.267					177	72	4	0	0	0	0.72502	1	13695	13695		15.333	0.63944	1	110830			65670	10163	54110	54164	72290	72290					0.1442042467522242
YYIFIIIMLLL	11	Unmodified	_YYIFIIIMLLL_					0	0	0		ENST00000299612.11_1_17:19286554-19286854:+|nuORF	ENST00000299612.11_1_17:19286554-19286854:+|nuORF	ENST00000299612.11_1_17:19286554-19286854:+|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	472.283935546875	3	472.285466	1413.83457	-5.3969	-0.0025489	1.9927	0.00094111	-3.4042	-0.0016077	472.28668669654706	159.46	3.529	157.88	156.69	160.22	-1.5858					186	88	4	0	0	0	0.72502	1	15722	15722		15.333	4.3349	1	120390			65671	10163	54110	54164	72291	72291					0.1442042467522242
YYIFIPSKF	9	Unmodified	_YYIFIPSKF_					0	0	0		ENST00000545038.5_1_12:12966301-12976268:+|nuORF;ENST00000541537.5_1_12:12966301-12977638:+|nuORF;nc|ENSG00000213782|Q9H0S4-2|DDX47;ENSG00000213782|ENST00000358007|DDX47;ENST00000542123.5_1_12:12966301-12976268:+|nuORF	ENST00000545038.5_1_12:12966301-12976268:+|nuORF	ENST00000545038.5_1_12:12966301-12976268:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	589.3197631835938	2	589.318243	1176.62193	1.8814	0.0011087	-0.84716	-0.00049925	1.0342	0.00060949	589.3178770977415	128.86	4.0908	128.86	128.47	132.56	0					266	86	6	0	0	0	0.055627	7	14932	14911;14932;14956;14980;15004;15082;15107		115.49	56.712	1	48468000			65672	9147	54111	54165	72292;72293;72294;72295;72296;72297;72298	72293					0.04068674659561111
YYIKLFVE	8	Unmodified	_YYIKLFVE_					0	0	0			REV__tr|A0A553SGL1|A0A553SGL1_NIACISigma-70familyRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=CEQ21_11080PE=3SV=1	REV__tr|A0A553SGL1|A0A553SGL1_NIACISigma-70familyRNApolymerasesigmafactorOS=NialliacirculansOX=1397GN=CEQ21_11080PE=3SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	538.7899780273438	2	537.797143	1073.57973	-1.6844	-0.00090584	-2.4534	-0.0013194	-4.1378	-0.0022253	538.2973979073278	53.607	0.30492	50.383	50.185	50.49	-3.2235					6	5	2	0	0	0	0.028476	1	3263	3263		31.955	2.7848	1	8767.6	+		65673	29717	54112	54166	72299	72299					0.04588699251212347
YYISPRLTF	9	Unmodified	_YYISPRLTF_					0	0	0		nc|ENSG00000155926|Q13239-2|SLA;ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA	nc|ENSG00000155926|Q13239-2|SLA	nc|ENSG00000155926|Q13239-2|SLA	MULTI-MSMS	OvCa99_classI_Rep5	1	580.3110961914062	2	580.310949	1158.60735	1.1434	0.00066354	0.63379	0.0003678	1.7772	0.0010313	580.311096201283	112.14	0.50807	112.14	111.93	112.43	0					26	10	3	0	0	0	0.26076	1	12754	12754		67.494	0	1	545790			65674	5810	54113	54167	72300	72300					0.034386025114145014
YYISPRLTF	9	Unmodified	_YYISPRLTF_					0	0	0		nc|ENSG00000155926|Q13239-2|SLA;ENSG00000155926|ENST00000338087|SLA;nc|ENSG00000155926|Q13239-3|SLA;nc|ENSG00000155926|Q13239-5|SLA	nc|ENSG00000155926|Q13239-2|SLA	nc|ENSG00000155926|Q13239-2|SLA	MULTI-MSMS	OvCa99_classI_Rep5	1	580.31201171875	2	580.310949	1158.60735	2.0176	0.0011709	-0.16663	-9.6698E-05	1.851	0.0010742	580.3107063223028	113.46	1.0898	113.46	113.11	114.2	0					74	25	4	0	0	0	0.060996	2	12940	12918;12940		112.41	0	1	4955500			65675	5810	54113	54167	72301;72302	72302					0.034386025114145014
YYITGNLETF	10	Unmodified	_YYITGNLETF_					0	0	0		nc|ENSG00000091490|Q68CR1-3|SEL1L3;nc|ENSG00000091490|Q68CR1-2|SEL1L3;ENSG00000091490|ENST00000399878|SEL1L3	nc|ENSG00000091490|Q68CR1-3|SEL1L3	nc|ENSG00000091490|Q68CR1-3|SEL1L3	MULTI-MSMS	OvCa99_classI_Rep5	1	610.7968139648438	2	610.795329	1219.5761	2.045	0.0012491	-0.4592	-0.00028048	1.5858	0.00096861	610.7950237045333	129.14	0.61084	129.14	128.88	129.5	0					20	12	2	0	0	0	0.063542	2	14971	14971;14996		124.08	41.84	1	516030			65676	1871	54114	54168	72303;72304	72303					-0.024900153133330605
YYITTRAQF	9	Unmodified	_YYITTRAQF_					0	0	0		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-SECPEP	OvCa99_classI_Rep5	1	581.773193359375	2	581.798206	1161.58186	2.209	0.0012852	0.40531	0.00023581	2.6144	0.001521	581.7981189385177	86.333	1.1841	86.333	85.87	87.054	0					51	28	4	0	0	0	0.027462	1	9119	9119		51.193	15.574	1	10505000			65677	949	54115	54169	72305	72305					0.007531279889917641
YYITTRAQF	9	Unmodified	_YYITTRAQF_					0	0	0		nc|ENSG00000010810|P06241-3|FYN;nc|ENSG00000010810|P06241-2|FYN;ENSG00000010810|ENST00000354650|FYN;ENSG00000176105|ENST00000314574|YES1	nc|ENSG00000010810|P06241-3|FYN	nc|ENSG00000010810|P06241-3|FYN	MULTI-MATCH	OvCa9_classI_Rep2	2		2	581.798206	1161.58186	1.3824	0.0008043	-4.4701	-0.0026007	-3.0876	-0.0017964	581.7934671694734	88.027	1.1281	86.653	86.096	87.224	-1.3748	0.15979	-0.0049266	NaN	56.434	50	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	43202			65678	949	54115	54169							0.007531279889917641
YYITTRVQF	9	Unmodified	_YYITTRVQF_					0	0	0		ENSG00000000938|ENST00000374005|FGR	ENSG00000000938|ENST00000374005|FGR	ENSG00000000938|ENST00000374005|FGR	MULTI-MSMS	OvCa99_classI_Rep5	1	595.815673828125	2	595.813856	1189.61316	2.1328	0.0012708	0.12137	7.2312E-05	2.2542	0.0013431	595.8138362402506	101.13	2.0794	101.13	100.81	102.89	0					112	48	5	0	0	0	0.060996	2	11250	11219;11250		112.41	43.624	1	9835300			65679	801	54116	54170	72306;72307	72307					0.025937010230791202
YYITTRVQF	9	Unmodified	_YYITTRVQF_					0	0	0		ENSG00000000938|ENST00000374005|FGR	ENSG00000000938|ENST00000374005|FGR	ENSG00000000938|ENST00000374005|FGR	MULTI-MATCH	OvCa9_classI_Rep3	3		2	595.813856	1189.61316	0.071058	4.2337E-05	-4.2414	-0.0025271	-4.1704	-0.0024848	595.8114399673675	102.35	0.62334	100.83	100.63	101.26	-1.5211	-0.14827	-0.0050138	NaN	112.41	14	11	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	22619			65680	801	54116	54170							0.025937010230791202
YYKEKKVRVKI	11	Unmodified	_YYKEKKVRVKI_					0	0	0		tr|A0A7D6VSK1|A0A7D6VSK1_9CLOTRecombinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13210PE=4SV=1	tr|A0A7D6VSK1|A0A7D6VSK1_9CLOTRecombinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13210PE=4SV=1	tr|A0A7D6VSK1|A0A7D6VSK1_9CLOTRecombinasefamilyproteinOS=ClostridiumintestinaleOX=36845GN=HZF06_13210PE=4SV=1	MULTI-MSMS	OvCa99_classI_Rep5	1	485.3025817871094	3	485.301166	1452.88167	-0.39153	-0.00019001	2.8543	0.0013852	2.4628	0.0011952	485.30265477000466	23.835	0.98853	23.835	23.597	24.586	0					57	19	5	0	0	0	0.72545	1	388	388		9.6461	3.6451	1	1181200			65681	35032	54117	54171	72308	72308					0.17334420270549344
YYKQLNLV	8	Unmodified	_YYKQLNLV_					0	0	0		nc|ENSG00000170959|M0R2J8|DCDC1;ENSG00000170959|ENST00000684477|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	nc|ENSG00000170959|M0R2J8|DCDC1	MULTI-MSMS	OvCa9_classI_Rep3	3	520.7921752929688	2	520.792392	1039.57023	-0.72647	-0.00037834	-3.3293	-0.0017339	-4.0557	-0.0021122	520.7905078428217	96.526	1.283	94.698	94.369	95.652	-1.8286					57	24	3	0	0	0	0.73626	1	6362	6362		33.516	0	1	316590			65682	7158	54118	54172	72309	72309					0.05202930965651831
YYKSTSSAF	9	Unmodified	_YYKSTSSAF_					0	0	0		ENSG00000197093|ENST00000360039|GAL3ST4;ENST00000423751.2_1_7:99757553-99764836:-|nuORF;nc|ENSG00000197093|Q96RP7-2|GAL3ST4	ENSG00000197093|ENST00000360039|GAL3ST4;ENST00000423751.2_1_7:99757553-99764836:-|nuORF	ENST00000423751.2_1_7:99757553-99764836:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	527.250244140625	2	527.248015	1052.48148	-0.65385	-0.00034474	0.28871	0.00015222	-0.36514	-0.00019252	527.2481485973436	54.831	0.64287	54.831	54.59	55.233	0					37	14	4	0	0	0	0.3076	1	4453	4453		62.107	5.3864	1	2035200			65683	8675;11706	54119	54173	72310	72310					-0.04266529064648239
YYLGARTV	8	Unmodified	_YYLGARTV_					0	0	0			REV__ENSG00000239697|ENST00000293825|TNFSF12	REV__ENSG00000239697|ENST00000293825|TNFSF12	MULTI-MSMS	OvCa9_classI_Rep4_	4	471.7530517578125	2	471.75581	941.497067	-0.090742	-4.2808E-05	-1.9195	-0.00090554	-2.0103	-0.00094835	471.75358920633613	51.03	0.85534	47.857	47.516	48.372	-3.1734					55	16	6	0	0	0	0.66704	1	2975	2975		50.025	4.0726	1	326800	+		65684	23432	54120	54174	72311	72311					0.02397802243035585
YYLHPLPAGA	10	Unmodified	_YYLHPLPAGA_					0	0	0		nc|ENSG00000162572|P51172-1|SCNN1D;nc|ENSG00000162572|P51172-2|SCNN1D;ENSG00000162572|ENST00000379116|SCNN1D	nc|ENSG00000162572|P51172-1|SCNN1D	nc|ENSG00000162572|P51172-1|SCNN1D	MULTI-SECPEP	OvCa9_classI_Rep4_	4	551.3125610351562	2	551.290017	1100.56548	1.2756	0.0007032	0.21869	0.00012056	1.4942	0.00082376	551.2909287661314	85.781	0.34397	83.135	82.848	83.192	-2.6463					9	6	2	0	0	0	0.027007	1	7226	7226		26.796	7.4361	1	21260			65685	6194	54121	54175	72312	72312					0.019220468229150356
YYLIGPVAL	9	Unmodified	_YYLIGPVAL_					0	0	0		tr|A0A553SF67|A0A553SF67_NIACIPTSsugartransporterOS=NialliacirculansOX=1397GN=CEQ21_08365PE=4SV=1	tr|A0A553SF67|A0A553SF67_NIACIPTSsugartransporterOS=NialliacirculansOX=1397GN=CEQ21_08365PE=4SV=1	tr|A0A553SF67|A0A553SF67_NIACIPTSsugartransporterOS=NialliacirculansOX=1397GN=CEQ21_08365PE=4SV=1	MULTI-SECPEP	OvCa9_classI_Rep4_	4	505.32305908203125	2	504.791861	1007.56917	-0.44618	-0.00022523	-4.378	-0.00221	-4.8242	-0.0024352	504.78966889171227	116.46	0.82444	115.1	114.89	115.72	-1.3645					23	15	2	0	0	0	0.027462	1	10937	10937		39.021	0	1	34263			65686	32997	54122	54176	72313	72313					0.06568716596768809
YYLNDLDRI	9	Unmodified	_YYLNDLDRI_					0	0	0		VTCN1-GNAI3|1|fusion;ENSG00000214415|ENST00000398291|GNAT3;ENSG00000127955|ENST00000649796|GNAI1;ENSG00000065135|ENST00000369851|GNAI3;GNAI3|p.Q164H|1|0.24|ENSG00000065135|chr1:109582467-109582467|G/T|missense_variant;nc|ENSG00000127955|P63096-2|GNAI1	VTCN1-GNAI3|1|fusion	VTCN1-GNAI3|1|fusion	MULTI-MSMS	OvCa99_classI_Rep5	1	592.8024291992188	2	592.800946	1183.58734	1.7672	0.0010476	0.78435	0.00046496	2.5516	0.0015126	592.8014191242272	105.9	0.92168	105.9	105.66	106.58	0					47	20	4	0	0	0	0.051592	1	11905	11905		117.81	46.515	1	1909800			65687	1315	54123	54177	72314	72314					0.0028880678080440703
YYLNTCSLQK	10	Unmodified	_YYLNTCSLQK_					0	0	0			REV__ENST00000404701.1_1_6:38556045-38556120:+|nuORF	REV__ENST00000404701.1_1_6:38556045-38556120:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	412.25079345703125	3	411.537513	1231.59071	0.44574	0.00018344	3.5994	0.0014813	4.0451	0.0016647	411.5387015316486	33.79	0.38947	33.79	33.483	33.873	0					17	7	3	0	0	0	0.027028	1	1583	1583		12.957	0	1	45240	+		65688	25435	54124	54178	72315	72315					-0.01582266436844293
YYLPPQPAPP	10	Unmodified	_YYLPPQPAPP_					0	0	0			REV__ENST00000465184.1_1_7:94294121-94298055:+|nuORF	REV__ENST00000465184.1_1_7:94294121-94298055:+|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	571.8009643554688	2	571.797675	1141.5808	1.073	0.00061352	2.7764	0.0015876	3.8494	0.0022011	571.799303854714	143.26	1.1773	143.26	142.93	144.11	0					45	23	4	0	0	0	0.55145	1	16755	16755		47.916	1.4588	1	224360	+		65689	23456	54125	54179	72316	72316					0.0156691362010406
YYLQLEDDII	10	Unmodified	_YYLQLEDDII_					0	0	0		ENSG00000205301|ENST00000511113|MGAT4D	ENSG00000205301|ENST00000511113|MGAT4D	ENSG00000205301|ENST00000511113|MGAT4D	MULTI-SECPEP	OvCa99_classI_Rep5	1	642.287841796875	2	642.821544	1283.62853	0.91335	0.00058712	-1.0149	-0.00065243	-0.10159	-6.5306E-05	642.8207223699698	140.58	1.6183	140.58	140.17	141.79	0					60	32	4	0	0	0	0.02663	1	16514	16514		42.864	0	1	156450			65690	9062	54126	54180	72317	72317					-0.0019347697036664613
YYLRKGKKIN	10	Unmodified	_YYLRKGKKIN_					0	0	0		ENSG00000189252|ENST00000370503|SPANXN3	ENSG00000189252|ENST00000370503|SPANXN3	ENSG00000189252|ENST00000370503|SPANXN3	MULTI-MSMS	OvCa9_classI_Rep2	2	641.8822021484375	2	641.885147	1281.75574	-4.6434	-0.0029805	0.6524	0.00041876	-3.991	-0.0025618	641.8854539776787	152.83	4.2905	152.6	151.29	155.59	-0.22697					356	100	5	0	0	0	0.71192	2	15574	15574;15819		29.15	8.1776	1	543390			65691	8545	54127	54181	72318;72319	72318					0.12613333485137446
YYLRKGKKIN	10	Unmodified	_YYLRKGKKIN_					0	0	0		ENSG00000189252|ENST00000370503|SPANXN3	ENSG00000189252|ENST00000370503|SPANXN3	ENSG00000189252|ENST00000370503|SPANXN3	MULTI-MSMS	OvCa9_classI_Rep4_	4	641.8824462890625	2	641.885147	1281.75574	-3.6311	-0.0023307	-0.33677	-0.00021616	-3.9678	-0.0025469	641.8847801872174	153.39	4.0845	151.94	150.68	154.77	-1.4516					420	106	6	0	0	0	0.76627	1	15374	15374		23.042	0.46283	1	809780			65692	8545	54127	54181	72320	72320					0.12613333485137446
YYLRNFFL	8	Unmodified	_YYLRNFFL_					0	0	0		ENST00000509155.1_3_4:12642019-12642223:-|nuORF	ENST00000509155.1_3_4:12642019-12642223:-|nuORF	ENST00000509155.1_3_4:12642019-12642223:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	568.302490234375	2	568.300384	1134.58622	2.8224	0.001604	1.7602	0.0010003	4.5826	0.0026043	568.3014781652474	96.355	1.0976	96.355	95.869	96.966	0					54	25	3	0	0	0	0.69415	1	10590	10590		44.531	5.2782	1	7521300			65693	12957	54128	54182	72321	72321					0.02430637202564867
YYMIGEQKF	9	Unmodified	_YYMIGEQKF_					0	0	0		ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	ENSG00000166741|ENST00000299964|NNMT	MULTI-MSMS	OvCa99_classI_Rep5	1	589.783447265625	2	589.781167	1177.54778	2.3231	0.0013701	0.36262	0.00021387	2.6857	0.001584	589.7811041951541	94.998	1.2241	94.998	94.732	95.956	0					69	28	5	0	0	0	0.012051	2	10366	10343;10366		162.25	84.935	1	9566600			65694	6706	54129	54183	72322;72323	72323					-0.033890364942863016
YYMKDLPTSF	10	Unmodified	_YYMKDLPTSF_					0	0	0		ENSG00000241973|ENST00000255882|PI4KA;ENST00000485963.5_1_22:21152870-21213097:-|nuORF	ENSG00000241973|ENST00000255882|PI4KA	ENSG00000241973|ENST00000255882|PI4KA	MULTI-MSMS	OvCa99_classI_Rep5	1	632.8023071289062	2	632.799557	1263.58456	2.2366	0.0014153	0.060554	3.8318E-05	2.2972	0.0014537	632.799438990173	107.28	0.9681	107.28	106.97	107.94	0					61	22	4	0	0	0	0.11648	2	12084	12084;12110		109.44	29.726	1	3836600			65695	9359	54130	54184	72324;72325	72324					-0.03668784668366243
YYNGKWEFL	9	Unmodified	_YYNGKWEFL_					0	0	0		ENSG00000144843|ENST00000357003|ADPRH	ENSG00000144843|ENST00000357003|ADPRH	ENSG00000144843|ENST00000357003|ADPRH	MULTI-MSMS	OvCa99_classI_Rep5	1	610.2937622070312	2	610.292756	1218.57096	1.8843	0.00115	0.22265	0.00013588	2.1069	0.0012858	610.2927410758609	112.46	1.1316	112.46	112.16	113.29	0					56	24	4	0	0	0	0.074342	2	12814	12790;12814		104.75	16.992	1	2374400			65696	5185	54131	54185	72326;72327	72327					-0.029582743852870408
YYNKVSTVF	9	Unmodified	_YYNKVSTVF_					0	0	0		ENSG00000107581|ENST00000369144|EIF3A;nc|ENSG00000107581|Q14152-2|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	ENSG00000107581|ENST00000369144|EIF3A	MULTI-MSMS	OvCa99_classI_Rep5	1	560.7892456054688	2	560.787307	1119.56006	2.8058	0.0015735	-0.91967	-0.00051574	1.8862	0.0010577	560.7866853373838	82.714	0.98445	82.714	82.351	83.335	0					36	22	2	0	0	0	0.094616	1	8570	8570		98.629	35.323	1	2374000			65697	2604	54132	54186	72328	72328					0.005063232404381779
YYPAKTINQ	9	Unmodified	_YYPAKTINQ_					0	0	0			REV__ENST00000532700.2_16:18911312-18937283:-|nuORF	REV__ENST00000532700.2_16:18911312-18937283:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	549.2864990234375	2	549.284931	1096.55531	1.8475	0.0010148	2.4081	0.0013227	4.2556	0.0023375	549.2861531464556	133.98	0.47713	133.98	133.72	134.2	0					15	9	2	0	0	0	0.53483	1	15593	15593		39.253	1.7447	1	130600	+		65698	27239	54133	54187	72329	72329					0.010894390976545765
YYPEYKLLF	9	Unmodified	_YYPEYKLLF_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	MULTI-MSMS	OvCa99_classI_Rep5	1	618.32275390625	2	618.320983	1234.62741	0.79262	0.0004901	1.0998	0.00068001	1.8924	0.0011701	618.3215326136908	124.25	1.4482	124.25	123.92	125.37	0					114	32	5	0	0	0	0.16264	2	14341	14317;14341		82.75	34.835	1	10117000			65699	6026	54134	54188	72330;72331	72331					0.019483534513710765
YYPEYKLLF	9	Unmodified	_YYPEYKLLF_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	MULTI-MSMS	OvCa9_classI_Rep3	3	618.3226928710938	2	618.320983	1234.62741	2.5456	0.001574	-2.7008	-0.0016699	-0.15517	-9.5943E-05	618.31904891024	124.24	1.3023	123.2	122.87	124.17	-1.0377					63	24	4	0	0	0	0.53483	1	9620	9620		39.253	8.7492	1	134840			65700	6026	54134	54188	72332	72332					0.019483534513710765
YYPEYKLLF	9	Unmodified	_YYPEYKLLF_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	MULTI-MSMS	OvCa9_classI_Rep4_	4	618.3196411132812	2	618.320983	1234.62741	-1.0712	-0.00066232	0.88982	0.0005502	-0.18133	-0.00011212	618.3212200119873	124.54	1.2461	123.15	122.87	124.11	-1.3908					64	23	5	0	0	0	0.5811	1	11809	11809		34.173	5.023	1	149640			65701	6026	54134	54188	72333	72333					0.019483534513710765
YYPEYKLLF	9	Unmodified	_YYPEYKLLF_					0	0	0		ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	ENSG00000159720|ENST00000290949|ATP6V0D1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	618.320983	1234.62741	-0.47446	-0.00029337	0.28906	0.00017873	-0.1854	-0.00011464	618.3208949262854	123.33	1.6264	123.11	122.86	124.48	-0.21803	-0.041515	0.001414	NaN	39.253	73	32	4	NaN	NaN	NaN	NaN	0				NaN	NaN	0	121980			65702	6026	54134	54188							0.019483534513710765
YYPNGIRL	8	Unmodified	_YYPNGIRL_					0	0	0		nc|ENSG00000144711|Q6DN90-2|IQSEC1;IQSEC1|p.N846Tfs*27|1|0.43|ENSG00000144711|chr3:12909358-12909358|G/-|frameshift_variant;nc|ENSG00000144711|Q6DN90|IQSEC1;ENSG00000144711|ENST00000613206|IQSEC1	nc|ENSG00000144711|Q6DN90-2|IQSEC1	nc|ENSG00000144711|Q6DN90-2|IQSEC1	MULTI-MSMS	OvCa9_classI_Rep4_	4	498.2711181640625	2	498.269084	994.523616	0.43245	0.00021547	1.8368	0.00091521	2.2692	0.0011307	498.26989989499106	32.13	0.90043	29.435	28.914	29.814	-2.6954					52	30	2	0	0	0	0.74394	1	713	713		13.775	1.5685	1	19898			65703	5175	54135	54189	72334	72334					0.026134911343774547
YYPNPPLVL	9	Unmodified	_YYPNPPLVL_					0	0	0		ENSG00000178425|ENST00000319550|NT5DC1;nc|ENSG00000178425|Q5TFE4-2|NT5DC1	ENSG00000178425|ENST00000319550|NT5DC1	ENSG00000178425|ENST00000319550|NT5DC1	MULTI-MSMS	OvCa99_classI_Rep5	1	538.2959594726562	2	538.294768	1074.57498	2.0151	0.0010847	0.12178	6.5554E-05	2.1369	0.0011503	538.2947261262416	133.95	0.75842	133.95	133.58	134.34	0					45	15	4	0	0	0	0.13154	1	15585	15585		88.643	14.388	1	996790			65704	7756	54136	54190	72335	72335					0.040678151084193814
YYPRVEYGF	9	Unmodified	_YYPRVEYGF_					0	0	0		nc|ENSG00000244731|P0C0L4-2|C4A;ENSG00000244731|ENST00000428956|C4A;ENSG00000224389|ENST00000435363|C4B;ENST00000468936.5_1_6:31999682-32002424:+|nuORF;ENST00000468237.5_1_6:32001530-32003051:+|nuORF	nc|ENSG00000244731|P0C0L4-2|C4A	nc|ENSG00000244731|P0C0L4-2|C4A	MULTI-MSMS	OvCa99_classI_Rep5	1	597.2864990234375	2	597.284931	1192.55531	3.0049	0.0017948	-0.56595	-0.00033804	2.4389	0.0014567	597.2844373163601	97.846	0.76741	97.846	97.522	98.29	0					52	17	4	0	0	0	0.24951	1	10758	10758		68.787	28.009	1	2680800			65705	9254	54137	54191	72336	72336					-0.033265609023374054
YYQHIVTTL	9	Unmodified	_YYQHIVTTL_					0	0	0		nc|ENSG00000116005|Q9UHG3-2|PCYOX1;ENSG00000116005|ENST00000433351|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	nc|ENSG00000116005|Q9UHG3-2|PCYOX1	MULTI-MSMS	OvCa99_classI_Rep5	1	569.3013916015625	2	569.300581	1136.58661	2.535	0.0014432	0.36831	0.00020968	2.9033	0.0016529	569.3006065885353	86.281	0.93446	86.281	85.954	86.888	0					57	22	4	0	0	0	0.053172	1	9079	9079		116.9	45.026	1	4177300			65706	3148	54138	54192	72337	72337					0.023780121317713565
YYQLGKANAVT	11	Unmodified	_YYQLGKANAVT_					0	0	0			REV__ENSG00000134962|ENST00000257408|KLB	REV__ENSG00000134962|ENST00000257408|KLB	MULTI-MSMS	OvCa99_classI_Rep5	1	614.3224487304688	2	614.322045	1226.62954	-0.43275	-0.00026585	0.3387	0.00020807	-0.094057	-5.7781E-05	614.3222338037481	35.265	0.65517	35.265	34.911	35.566	0					28	13	4	0	0	0	0.61983	1	1772	1772		42.864	3.6114	1	309450	+		65707	19244	54139	54193	72338	72338					0.025287821891879503
YYQNYFEKL	9	Unmodified	_YYQNYFEKL_					0	0	0		nc|ENSG00000166889|Q86TB9-2|PATL1;nc|ENSG00000166889|Q86TB9-4|PATL1;ENSG00000166889|ENST00000300146|PATL1	nc|ENSG00000166889|Q86TB9-2|PATL1	nc|ENSG00000166889|Q86TB9-2|PATL1	MULTI-MSMS	OvCa99_classI_Rep5	1	634.3065185546875	2	634.303321	1266.59209	2.636	0.001672	0.40563	0.00025729	3.0417	0.0019293	634.3034703308114	99.605	1.127	99.605	99.318	100.44	0					69	26	4	0	0	0	0.012992	2	11004	11004;11039		159.28	62.611	1	9834000			65708	6731	54140	54194	72339;72340	72339					-0.030543090764240333
YYQSIVQYL	9	Unmodified	_YYQSIVQYL_					0	0	0		DNAAF5|p.S786I|1|0.11|ENSG00000164818|chr7:780070-780070|G/T|missense_variant	DNAAF5|p.S786I|1|0.11|ENSG00000164818|chr7:780070-780070|G/T|missense_variant	DNAAF5|p.S786I|1|0.11|ENSG00000164818|chr7:780070-780070|G/T|missense_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	588.8013916015625	2	588.800414	1175.58628	2.8098	0.0016544	-0.28462	-0.00016758	2.5252	0.0014868	588.8000952713936	99.06	0.72399	99.06	98.764	99.488	0					52	17	4	0	0	0	0.36502	1	10938	10938		55.504	6.0627	1	6355400			65709	745	54141	54195	72341	72341					0.005505924119233896
YYRDDFYDRL	10	Unmodified	_YYRDDFYDRL_					0	0	0		ENSG00000125970|ENST00000246194|RALY;RALY|p.S176Afs*7|1|0.08|ENSG00000125970|chr20:34076020-34076020|C/-|frameshift_variant	ENSG00000125970|ENST00000246194|RALY	ENSG00000125970|ENST00000246194|RALY	MULTI-MSMS	OvCa99_classI_Rep5	1	475.8876647949219	3	475.88597	1424.63608	2.2459	0.0010688	0.32214	0.0001533	2.568	0.0012221	475.8860131799212	85.88	0.60748	85.88	85.663	86.271	0					36	14	4	0	0	0	0.4439	1	9032	9032		62.166	29.127	1	1766000			65710	3757	54142	54196	72342	72342					-0.05925324650092989
YYRVRASN	8	Unmodified	_YYRVRASN_					0	0	0			REV__ENSG00000156413|ENST00000318336|FUT6	REV__ENSG00000156413|ENST00000318336|FUT6	MULTI-MSMS	OvCa9_classI_Rep2	2	514.7687377929688	2	514.76724	1027.51993	3.6733	0.0018909	-0.81598	-0.00042004	2.8573	0.0014708	514.7667501531362	25.363	0.83264	22.654	22.479	23.311	-2.7097					28	18	2	0	0	0	0.75661	1	244	244		19.36	1.995	1	64230	+		65711	20476	54143	54197	72343	72343					0.007268213605357232
YYSGVPSLII	10	Unmodified	_YYSGVPSLII_					0	0	0			REV__tr|A0A553SMT3|A0A553SMT3_NIACIBranched-chain-amino-acidaminotransferaseOS=NialliacirculansOX=1397GN=CEQ21_23025PE=3SV=1	REV__tr|A0A553SMT3|A0A553SMT3_NIACIBranched-chain-amino-acidaminotransferaseOS=NialliacirculansOX=1397GN=CEQ21_23025PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	556.3063354492188	2	556.305332	1110.59611	0.96115	0.00053469	1.2166	0.00067681	2.1778	0.0012115	556.3058755399405	115.03	0.76428	113.63	113.3	114.07	-1.3977					25	14	2	0	0	0	0.3976	1	10691	10691		68.787	5.4806	1	114430	+		65712	30368	54144	54198	72344	72344					0.0452378041729844
YYSHLEGARF	10	Unmodified	_YYSHLEGARF_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	OvCa99_classI_Rep5	1	621.800048828125	2	621.798737	1241.58292	0.42194	0.00026236	-0.19825	-0.00012327	0.22369	0.00013909	621.7984796391149	67.076	0.9462	67.076	66.816	67.762	0					44	23	3	0	0	0	0.095035	1	6259	6259		93.143	45.184	1	3169600			65713	4962	54145	54199	72345	72345					-0.028206576420870988
YYSHLEGARF	10	Unmodified	_YYSHLEGARF_					0	0	0		ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	ENSG00000142207|ENST00000382751|URB1	MULTI-MSMS	OvCa99_classI_Rep5	1	414.86932373046875	3	414.86825	1241.58292	1.4313	0.00059381	-1.1356	-0.00047114	0.29568	0.00012267	414.8676900173973	67.115	0.9462	67.115	66.816	67.762	0					59	23	4	0	0	0	0.23547	1	6266	6266		89.029	33.308	1	3267500			65714	4962	54145	54199	72346	72346					-0.028206576420870988
YYSPLRDLL	9	Unmodified	_YYSPLRDLL_					0	0	0		nc|ENSG00000185989|Q14644-2|RASA3;ENSG00000185989|ENST00000334062|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	nc|ENSG00000185989|Q14644-2|RASA3	MULTI-MSMS	OvCa99_classI_Rep5	1	570.3153686523438	2	570.308406	1138.60226	2.1853	0.0012463	3.7892	0.002161	5.9744	0.0034073	570.3104160088915	120.62	4.1316	120.62	119.65	123.79	0					235	92	4	0	0	0	0.28934	1	13824	13824		64.207	3.9133	1	6526800			65715	8307	54146	54200	72347	72347					0.03850298648808348
YYTDIMHTL	9	Unmodified	_YYTDIMHTL_					0	0	0		ENSG00000196576|ENST00000359337|PLXNB2;ENST00000479701.5_1_22:50714135-50720918:-|nuORF;TUBGCP6-PLXNB2|1|fusion	ENSG00000196576|ENST00000359337|PLXNB2	ENSG00000196576|ENST00000359337|PLXNB2	MULTI-MSMS	OvCa99_classI_Rep5	1	578.7723999023438	2	578.7708	1155.52705	1.5715	0.00090953	-0.061329	-3.5495E-05	1.5102	0.00087403	578.7707238871486	108.62	2.3737	108.62	108.03	110.4	0					124	53	4	0	0	0	0.0071018	4	12317	12270;12292;12317;12343		214.25	120.24	1	9103900			65716	8628	54147	54201	72348;72349;72350;72351	72350					-0.044496268739294464
YYTIIVAIIGL	11	Unmodified	_YYTIIVAIIGL_					0	0	0		tr|A0A553STV2|A0A553STV2_NIACIDamage-inducibleproteinCinAOS=NialliacirculansOX=1397GN=CEQ21_05675PE=4SV=1	tr|A0A553STV2|A0A553STV2_NIACIDamage-inducibleproteinCinAOS=NialliacirculansOX=1397GN=CEQ21_05675PE=4SV=1	tr|A0A553STV2|A0A553STV2_NIACIDamage-inducibleproteinCinAOS=NialliacirculansOX=1397GN=CEQ21_05675PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	619.8690185546875	2	619.873382	1237.73221	-3.6059	-0.0022352	-2.8194	-0.0017477	-6.4253	-0.0039829	619.8714760877099	150.54	4.6172	149.59	148.1	152.71	-0.95647					323	92	5	0	0	0	0.68684	1	12936	12936		34.173	1.3601	1	664560			65717	34539	54148	54202	72352	72352					0.12285474927966789
YYTIIVAIIGL	11	Unmodified	_YYTIIVAIIGL_					0	0	0		tr|A0A553STV2|A0A553STV2_NIACIDamage-inducibleproteinCinAOS=NialliacirculansOX=1397GN=CEQ21_05675PE=4SV=1	tr|A0A553STV2|A0A553STV2_NIACIDamage-inducibleproteinCinAOS=NialliacirculansOX=1397GN=CEQ21_05675PE=4SV=1	tr|A0A553STV2|A0A553STV2_NIACIDamage-inducibleproteinCinAOS=NialliacirculansOX=1397GN=CEQ21_05675PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	619.8699340820312	2	619.873382	1237.73221	-4.2914	-0.0026601	-1.667	-0.0010333	-5.9584	-0.0036935	619.871941810291	154.44	0.79832	152.99	152.59	153.38	-1.4517					35	20	2	0	0	0	0.72499	1	15290	15290		15.642	0	1	27339			65718	34539	54148	54202	72353	72353					0.12285474927966789
YYTITVLLLL	10	Unmodified	_YYTITVLLLL_					0	0	0			REV__ENST00000430246.6_1_14:21731323-21731509:-|nuORF	REV__ENST00000430246.6_1_14:21731323-21731509:-|nuORF	MULTI-MSMS	OvCa9_classI_Rep4_	4	606.3696899414062	2	606.367933	1210.72131	-0.26856	-0.00016285	3.1409	0.0019045	2.8723	0.0017417	606.369699493104	145.24	3.8933	143.8	141.64	145.53	-1.4357					226	74	4	0	0	0	0.76627	1	14154	14154		23.042	3.6825	1	336140	+		65719	25710	54149	54203	72354	72354					0.12438072553663915
YYTKGFALL	9	Unmodified	_YYTKGFALL_					0	0	0		nc|ENSG00000152952|O00469|PLOD2;ENSG00000152952|ENST00000282903|PLOD2;nc|ENSG00000152952|O00469-3|PLOD2	nc|ENSG00000152952|O00469|PLOD2	nc|ENSG00000152952|O00469|PLOD2	MULTI-MSMS	OvCa99_classI_Rep5	1	538.2952270507812	2	538.294768	1074.57498	2.4668	0.0013279	0.01989	1.0707E-05	2.4867	0.0013386	538.2947960855638	108.03	2.7613	108.03	107.73	110.49	0					125	62	3	0	0	0	0.045281	3	12227	12202;12227;12257		122.18	39.935	1	20544000			65720	5651	54150	54204	72355;72356;72357	72356					0.04067815108442119
YYTPITPHL	9	Unmodified	_YYTPITPHL_					0	0	0		nc|ENSG00000119314|O95758-7|PTBP3;nc|ENSG00000119314|O95758-1|PTBP3;ENSG00000119314|ENST00000374257|PTBP3;nc|ENSG00000119314|O95758-2|PTBP3;nc|ENSG00000119314|O95758|PTBP3;nc|ENSG00000119314|O95758-5|PTBP3;nc|ENSG00000119314|O95758-4|PTBP3	nc|ENSG00000119314|O95758-7|PTBP3	nc|ENSG00000119314|O95758-7|PTBP3	MULTI-MSMS	OvCa99_classI_Rep5	1	552.7910766601562	2	552.78985	1103.56515	2.2185	0.0012263	-0.045964	-2.5408E-05	2.1725	0.0012009	552.7897718532645	99.67	1.2882	99.67	99.115	100.4	0					95	30	5	0	0	0	0.018995	2	11038	11008;11038		148.21	90.395	1	18059000			65721	3351	54151	54205	72358;72359	72359					0.01750627103047009
YYTTPIYRF	9	Unmodified	_YYTTPIYRF_					0	0	0		ENSG00000104957|ENST00000221554|YJU2B	ENSG00000104957|ENST00000221554|YJU2B	ENSG00000104957|ENST00000221554|YJU2B	MULTI-MSMS	OvCa99_classI_Rep5	1	612.3099975585938	2	612.308406	1222.60226	3.1882	0.0019522	-0.90515	-0.00055423	2.2831	0.0013979	612.3077359343882	102.59	0.59832	102.59	102.29	102.89	0					22	13	2	0	0	0	0.3076	1	11442	11442		62.107	6.6032	1	1084300			65722	2410	54152	54206	72360	72360					-0.00013701351213057933
YYTTPIYRF	9	Unmodified	_YYTTPIYRF_					0	0	0		ENSG00000104957|ENST00000221554|YJU2B	ENSG00000104957|ENST00000221554|YJU2B	ENSG00000104957|ENST00000221554|YJU2B	MULTI-MATCH	OvCa9_classI_Rep3	3		2	612.308406	1222.60226	1.7278	0.001058	3.2058	0.0019629	4.9336	0.0030209	612.3102881592511	104.02	0.41832	102.59	102.29	102.71	-1.4347	-0.0023003	0.004791	NaN	62.107	9	7	2	NaN	NaN	NaN	NaN	0				NaN	NaN	0	17347			65723	2410	54152	54206							-0.00013701351213057933
YYVASAFTL	9	Unmodified	_YYVASAFTL_					0	0	0		ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	ENSG00000115758|ENST00000234111|ODC1	MULTI-MSMS	OvCa9_classI_Rep2	2	517.76220703125	2	517.7633	1033.51205	-2.0222	-0.001047	1.1299	0.00058503	-0.89232	-0.00046201	517.7636071898655	145.53	1.1407	145.3	144.98	146.12	-0.22697					50	22	3	0	0	0	0.58665	1	14657	14657		33.516	6.7195	1	120880			65724	3124	54153	54207	72361	72361					-0.0033675067961667082
YYVGIGIEDYN	11	Unmodified	_YYVGIGIEDYN_					0	0	0			REV__tr|A0A7D7A520|A0A7D7A520_9CLOTSerineproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05470PE=4SV=1	REV__tr|A0A7D7A520|A0A7D7A520_9CLOTSerineproteaseOS=ClostridiumintestinaleOX=36845GN=HZF06_05470PE=4SV=1	MULTI-MSMS	OvCa9_classI_Rep3	3	435.8742370605469	3	435.871438	1304.59248	1.6775	0.00073119	4.185	0.0018241	5.8625	0.0025553	435.8731814901466	111.37	1.5316	110.26	109.85	111.39	-1.1038					87	30	4	0	0	0	0.55686	2	8088	8083;8088		48.602	8.0407	1	394890	+		65725	32623	54154	54208	72362;72363	72363					-0.04762934147197484
YYVIDENI	8	Unmodified	_YYVIDENI_					0	0	0			REV__tr|A0A7D6ZXY9|A0A7D6ZXY9_9CLOTGlycosidehydrolasefamily13proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01115PE=3SV=1	REV__tr|A0A7D6ZXY9|A0A7D6ZXY9_9CLOTGlycosidehydrolasefamily13proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01115PE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep4_	4	514.7478637695312	2	514.75039	1027.48623	-1.8528	-0.00095371	-2.6879	-0.0013836	-4.5407	-0.0023373	514.748892104687	125.22	1.0615	123.83	123.54	124.6	-1.3908					46	20	3	0	0	0	0.71369	1	11889	11889		40.573	3.4135	1	131480	+		65726	32351	54155	54209	72364	72364					-0.02641644921891384
YYVIDENI	8	Unmodified	_YYVIDENI_					0	0	0			REV__tr|A0A7D6ZXY9|A0A7D6ZXY9_9CLOTGlycosidehydrolasefamily13proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01115PE=3SV=1	REV__tr|A0A7D6ZXY9|A0A7D6ZXY9_9CLOTGlycosidehydrolasefamily13proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01115PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep2	2		2	514.75039	1027.48623	0.42257	0.00021752	-4.6101	-0.0023731	-4.1875	-0.0021555	514.747763935971	124.23	1.134	124	123.68	124.82	-0.23193	0.12005	-0.00032154	NaN	40.573	41	22	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	87332	+		65727	32351	54155	54209							-0.02641644921891384
YYVIDENI	8	Unmodified	_YYVIDENI_					0	0	0			REV__tr|A0A7D6ZXY9|A0A7D6ZXY9_9CLOTGlycosidehydrolasefamily13proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01115PE=3SV=1	REV__tr|A0A7D6ZXY9|A0A7D6ZXY9_9CLOTGlycosidehydrolasefamily13proteinOS=ClostridiumintestinaleOX=36845GN=HZF06_01115PE=3SV=1	MULTI-MATCH	OvCa9_classI_Rep3	3		2	514.75039	1027.48623	1.9321	0.00099457	-6.24	-0.003212	-4.3078	-0.0022175	514.7470495899948	124.87	1.3031	123.81	123.48	124.78	-1.0519	-0.068091	-0.0019995	NaN	40.573	49	24	3	NaN	NaN	NaN	NaN	0				NaN	NaN	0	109400	+		65728	32351	54155	54209							-0.02641644921891384
YYVKFKNESEF	11	Unmodified	_YYVKFKNESEF_					0	0	0		tr|A0A553SQ23|A0A553SQ23_NIACIEndolyticmureintransglycosylaseOS=NialliacirculansOX=1397GN=mltGPE=3SV=1	tr|A0A553SQ23|A0A553SQ23_NIACIEndolyticmureintransglycosylaseOS=NialliacirculansOX=1397GN=mltGPE=3SV=1	tr|A0A553SQ23|A0A553SQ23_NIACIEndolyticmureintransglycosylaseOS=NialliacirculansOX=1397GN=mltGPE=3SV=1	MULTI-MSMS	OvCa9_classI_Rep2	2	485.237060546875	3	485.23812	1452.69253	-0.68923	-0.00033444	-2.07	-0.0010045	-2.7593	-0.0013389	485.23718396391587	56.503	4.4081	53.699	53.324	57.732	-2.804					235	86	5	0	0	0	0.62561	2	3999	3999;4007		42.338	2.365	1	702640			65729	34110	54156	54210	72365;72366	72365					-0.015706968134509225
YYVNGTYRL	9	Unmodified	_YYVNGTYRL_					0	0	0		RNF145|p.H596Pfs*7|1|0.02|ENSG00000145860|chr5:159158875-159158876|-/TCAACAG|frameshift_variant;ENSG00000145860|ENST00000424310|RNF145;nc|ENSG00000145860|Q96MT1-4|RNF145;nc|ENSG00000145860|Q96MT1-3|RNF145;nc|ENSG00000145860|Q96MT1-2|RNF145;nc|ENSG00000145860|Q96MT1-5|RNF145;ENST00000518062.1_1_5:158588183-158590023:-|nuORF	RNF145|p.H596Pfs*7|1|0.02|ENSG00000145860|chr5:159158875-159158876|-/TCAACAG|frameshift_variant	RNF145|p.H596Pfs*7|1|0.02|ENSG00000145860|chr5:159158875-159158876|-/TCAACAG|frameshift_variant	MULTI-MSMS	OvCa99_classI_Rep5	1	574.7918701171875	2	574.790381	1147.56621	0.86608	0.00049782	1.1426	0.00065675	2.0087	0.0011546	574.7910007119561	83.441	0.59652	83.441	83.204	83.801	0					28	13	3	0	0	0	0.31747	1	8683	8683		60.972	0	1	1462600			65730	5248	54157	54211	72367	72367					-0.0016715852802917652
YYVRAVLHL	9	Unmodified	_YYVRAVLHL_					0	0	0		ENST00000566534.5_1_16:88713161-88717421:-|nuORF;ENSG00000051523|ENST00000261623|CYBA	ENST00000566534.5_1_16:88713161-88717421:-|nuORF	ENST00000566534.5_1_16:88713161-88717421:-|nuORF	MULTI-MSMS	OvCa99_classI_Rep5	1	567.3290405273438	2	567.326934	1132.63931	1.6521	0.00093726	0.70274	0.00039868	2.3548	0.0013359	567.3272046078696	90.666	1.8808	90.666	90.421	92.301	0					131	45	5	0	0	0	0.098892	3	9786	9755;9786;9822		97.473	41.968	1	7206700			65731	1188	54158	54212	72368;72369;72370	72369					0.07830014985233902
YYYELWWFWLL	11	Unmodified	_YYYELWWFWLL_					0	0	0		ENST00000473467.5_1_2:74685729-74687181:+|nuORF;ENST00000441673.2_1_2:74684653-74687805:+|nuORF;ENST00000452361.5_1_2:74684918-74687805:+|nuORF;ENSG00000239779|ENST00000233615|WBP1	ENST00000473467.5_1_2:74685729-74687181:+|nuORF	ENST00000473467.5_1_2:74685729-74687181:+|nuORF	MULTI-SECPEP	OvCa99_classI_Rep5	1	560.852783203125	3	561.274506	1680.80169	2.9285	0.0016437	-2.148	-0.0012056	0.7805	0.00043808	561.6066618203857	84.758	0.37307	84.758	84.55	84.923	0					16	8	4	0	0	0	0.026488	1	8861	8861		6.3209	4.7979	1	165820			65732	9331	54159	54213	72371	72371					-0.011480661233008504
YYYKGNLLE	9	Unmodified	_YYYKGNLLE_					0	0	0		tr|A0A7D6VPY9|A0A7D6VPY9_9CLOTGlutamine--fructose-6-phosphateaminotransferase[isomerizing]OS=ClostridiumintestinaleOX=36845GN=glmSPE=3SV=1	tr|A0A7D6VPY9|A0A7D6VPY9_9CLOTGlutamine--fructose-6-phosphateaminotransferase[isomerizing]OS=ClostridiumintestinaleOX=36845GN=glmSPE=3SV=1	tr|A0A7D6VPY9|A0A7D6VPY9_9CLOTGlutamine--fructose-6-phosphateaminotransferase[isomerizing]OS=ClostridiumintestinaleOX=36845GN=glmSPE=3SV=1	MULTI-SECPEP	OvCa99_classI_Rep5	1	582.3126220703125	2	581.792589	1161.57063	1.6585	0.00096491	2.1486	0.0012501	3.8071	0.002215	581.7948214044635	136.7	0.28787	136.7	136.54	136.82	0					8	5	2	0	0	0	0.027448	1	15936	15936		53.351	16.192	1	26998			65733	34808	54160	54214	72372	72372					-0.0036969410512028844